
#NAME
ENCFF154DRN_RBFOX2_UTR_m2_run2.nuc.txt

#NT
GGGUGGGCCGGG	chr17:79991705-79992036(+)$1	331	106	118	18.6530
GGAUGGCCUGGG	chr6:43128564-43128776(+)$1	212	71	83	17.4285
GGCGGGGCUGGG	chr19:1881772-1882144(-)$1	372	34	46	23.9591
GGCUGGAGUGGG	chr17:80273518-80273777(-)$1	259	204	216	19.7755
GUCGGGGCAGGG	chr19:49127623-49127926(+)$1	303	81	93	16.7142
ggcggggcgggg	chr19:42788122-42788370(+)$1	248	87	99	21.6122
ggccgggcgggg	chr8:22423301-22423666(+)$1	365	148	160	20.8979
GGCUGGGCUGCC	chr19:10464218-10464570(-)$1	352	1	13	17.6326
GGCCGGGGUGGG	chr19:18547563-18547883(-)$1	320	116	128	21.8163
ggcugggcuggc	chr9:139917755-139918007(-)$1	252	21	33	21.8163
GCCUGGCCGGGG	chr8:144917365-144917617(-)$1	252	77	89	15.2857
CGGUGGGGUGGG	chr14:24036462-24036743(-)$1	281	42	54	15.8979
ggcugggcuccg	chr11:65339937-65340249(+)$1	312	99	111	16.5102
UGCUGGGGUGGG	chr19:436316-436610(-)$1	294	108	120	19.4693
GGGUGGGCGGGA	chr3:24535986-24536274(-)$1	288	170	182	15.1836
GGCUGGGCUGGG	chr3:184062808-184063103(+)$1	295	123	135	25.2857
GGCUGUCCUGGG	chr3:126061753-126062010(-)$1	257	216	228	16.6122
GCCUGGGGUGGG	chr7:99954873-99955126(+)$1	253	24	36	20.0816
GGCGGGGCGGGG	chr12:30907285-30907577(-)$1	292	15	27	21.6122
GGCCGGCCCGGG	chr9:99539971-99540261(-)$1	290	68	80	16.4081
CCCUGGGCUGGG	chr1:11119502-11119832(-)$1	330	141	153	17.2244
GGCAGGGGUGGG	chr20:60709623-60709874(+)$1	251	88	100	21.2040
AGCGGGGUUGGG	chr9:139743190-139743462(+)$1	272	91	103	17.0204
GGCGGGGCGGGG	chr2:74757004-74757309(+)$1	305	143	155	21.6122
GGCGGGUAUGGG	chr19:1104600-1104870(+)$1	270	126	138	17.0204
ggcggggcgggg	chr17:235820-236109(-)$1	289	38	50	21.6122
ggcggggcugag	chr8:145691389-145691673(+)$1	284	3	15	19.6734
GGCUGGGCAGGG	chr6:348998-349293(+)$1	295	2	14	22.1224
ggccgggcgggg	chr6:33588884-33589209(+)$1	325	250	262	20.8979
GGCGGGGCGGGC	chr12:122238034-122238277(-)$1	243	203	215	18.1428
ggcugggcuggc	chr9:139917973-139918252(-)$1	279	266	278	21.8163
GGGUGGGGUGGG	chr13:52026815-52027086(-)$1	271	61	73	20.1836
GGCUGGGUUUGG	chr7:47621100-47621428(-)$1	328	167	179	18.1428
GGUUGGGGUGGG	chrX:70280419-70280702(-)$1	283	60	72	19.7755
GCCCGGGCGGGG	chr17:36955857-36956130(-)$1	273	5	17	17.1224
GGGUGGGGUGGG	chr1:11721789-11722086(+)$1	297	139	151	20.1836
GGCCAGGGUGGG	chr12:16500604-16500820(+)$1	216	94	106	17.3265
GGCGCGGCUGGG	chr16:87738654-87738937(-)$1	283	148	160	19.3673
GGCUGGGUCGGG	chr17:7477081-7477305(+)$1	224	174	186	19.6734
GCCUGGGGUGGG	chr16:2579709-2579995(+)$1	286	100	112	20.0816
GGCCAGGCUGGG	chr5:175307410-175307689(+)$1	279	145	157	18.7551
GUCUGGGGUGGG	chr7:1585608-1585882(-)$1	274	129	141	19.7755
GGCUGGGCUGCC	chr19:10464384-10464628(-)$1	244	59	71	17.6326
ggaggggguggg	chr3:100428492-100428742(+)$1	250	222	234	18.5510
GGCGGGGCCGGC	chr11:65374346-65374609(-)$1	263	116	128	17.5306
GGCUGGAGUGGG	chr21:34942009-34942249(+)$1	240	44	56	19.7755
AGCGGGGCUGGC	chr9:139743590-139743811(+)$1	221	87	99	16.2040
GGCUGGGGUGAG	chr4:763856-764144(-)$1	288	49	61	19.5714

#otherMatches

#Struct PSSM
IIIIIIII::cc	chr7:100164155-100164394(+)$1	239	111	123	18.0408
============	chr17:79991705-79992036(+)$1	331	106	118	18.6530
ggmmmmgggggg	chr6:43128564-43128776(+)$1	212	71	83	17.4285
Eggggggg[ddd	chr19:1881772-1882144(-)$1	372	34	46	23.9591
gggggggggggg	chr17:80273518-80273777(-)$1	259	204	216	19.7755
5bb]dddd]bb2	chr19:49127623-49127926(+)$1	303	81	93	16.7142
cbb[ggggggg"	chr19:42788122-42788370(+)$1	248	87	99	21.6122
eeeecccFFFFF	chr8:22423301-22423666(+)$1	365	148	160	20.8979
IIIIIIIIIDDD	chr19:10464218-10464570(-)$1	352	1	13	17.6326
ggggggg!!a[i	chr19:18547563-18547883(-)$1	320	116	128	21.8163
eeeennnnneee	chr9:139917755-139918007(-)$1	252	21	33	21.8163
leeeee:fffff	chr8:144917365-144917617(-)$1	252	77	89	15.2857
{GGGGGGG{FFF	chr14:24036462-24036743(-)$1	281	42	54	15.8979
HH{CCCffffff	chr11:65339937-65340249(+)$1	312	99	111	16.5102
CC{DDDDFFFFF	chr19:436316-436610(-)$1	294	108	120	19.4693
llhhhhhhhh::	chr3:24535986-24536274(-)$1	288	170	182	15.1836
!!eeeee[hhhh	chr3:184062808-184063103(+)$1	295	123	135	25.2857
fffff22ddddb	chr3:126061753-126062010(-)$1	257	216	228	16.6122
CCBBNNNNNDDD	chr7:99954873-99955126(+)$1	253	24	36	20.0816
J{BBIIIIIIII	chr12:30907285-30907577(-)$1	292	15	27	21.6122
JJJJ{BBEEEEE	chr9:99539971-99540261(-)$1	290	68	80	16.4081
mmmmdddd]bbc	chr1:11119502-11119832(-)$1	330	141	153	17.2244
"dddd!!dddd#	chr20:60709623-60709874(+)$1	251	88	100	21.2040
!a[ccc[bbqqq	chr9:139743190-139743462(+)$1	272	91	103	17.0204
cccFFFFFF}A}	chr2:74757004-74757309(+)$1	305	143	155	21.6122
dd[dddd[bbff	chr19:1104600-1104870(+)$1	270	126	138	17.0204
lbbeeeee::ee	chr17:235820-236109(-)$1	289	38	50	21.6122
GGGGGGBB{A{F	chr8:145691389-145691673(+)$1	284	3	15	19.6734
EEEECCC{GGGG	chr6:348998-349293(+)$1	295	2	14	22.1224
dd22hhhhhhhh	chr6:33588884-33589209(+)$1	325	250	262	20.8979
DDDFFFFFFccc	chr12:122238034-122238277(-)$1	243	203	215	18.1428
hhh:FFFFFF::	chr9:139917973-139918252(-)$1	279	266	278	21.8163
========22ff	chr13:52026815-52027086(-)$1	271	61	73	20.1836
bbbb[a[bb[ab	chr7:47621100-47621428(-)$1	328	167	179	18.1428
dddccc[=====	chrX:70280419-70280702(-)$1	283	60	72	19.7755
{DDDDKKJJJJJ	chr17:36955857-36956130(-)$1	273	5	17	17.1224
"""ccc!!eeee	chr1:11721789-11722086(+)$1	297	139	151	20.1836
hhhhhhh!!bb[	chr12:16500604-16500820(+)$1	216	94	106	17.3265
dd[a[ggggggg	chr16:87738654-87738937(-)$1	283	148	160	19.3673
77==========	chr17:7477081-7477305(+)$1	224	174	186	19.6734
NHHHHHHHHCCC	chr16:2579709-2579995(+)$1	286	100	112	20.0816
iiiiiiiii:::	chr5:175307410-175307689(+)$1	279	145	157	18.7551
e::FFFFFF{DD	chr7:1585608-1585882(-)$1	274	129	141	19.7755
DDD{EEEEE{EE	chr19:10464384-10464628(-)$1	244	59	71	17.6326
]ddddGGGGGGG	chr3:100428492-100428742(+)$1	250	222	234	18.5510
fff333ccc22b	chr11:65374346-65374609(-)$1	263	116	128	17.5306
dddd22ccc333	chr21:34942009-34942249(+)$1	240	44	56	19.7755
gggggggdddd]	chr9:139743590-139743811(+)$1	221	87	99	16.2040
FFFFFF:EEEEE	chr4:763856-764144(-)$1	288	49	61	19.5714

#DB
((((((((..((	chr7:100164155-100164394(+)$1	1	111	123	18.0408
))))))))))))	chr17:79991705-79992036(+)$1	1	106	118	18.6530
((....))))))	chr6:43128564-43128776(+)$1	1	71	83	17.4285
((((((((.(((	chr19:1881772-1882144(-)$1	1	34	46	23.9591
)))))(((((((	chr17:80273518-80273777(-)$1	1	204	216	19.7755
.)).)))).)).	chr19:49127623-49127926(+)$1	1	81	93	16.7142
(((.(((((((.	chr19:42788122-42788370(+)$1	1	87	99	21.6122
))))))))))))	chr8:22423301-22423666(+)$1	1	148	160	20.8979
((((((((((((	chr19:10464218-10464570(-)$1	1	1	13	17.6326
(((((((..(.(	chr19:18547563-18547883(-)$1	1	116	128	21.8163
((((.....)))	chr9:139917755-139918007(-)$1	1	21	33	21.8163
.))))).(((((	chr8:144917365-144917617(-)$1	1	77	89	15.2857
.(((((((.(((	chr14:24036462-24036743(-)$1	1	42	54	15.8979
((.(((((((((	chr11:65339937-65340249(+)$1	1	99	111	16.5102
((.(((((((((	chr19:436316-436610(-)$1	1	108	120	19.4693
..))))))))..	chr3:24535986-24536274(-)$1	1	170	182	15.1836
..(((((.((((	chr3:184062808-184063103(+)$1	1	123	135	25.2857
)))))..)))))	chr3:126061753-126062010(-)$1	1	216	228	16.6122
((((.....(((	chr7:99954873-99955126(+)$1	1	24	36	20.0816
(.((((((((((	chr12:30907285-30907577(-)$1	1	15	27	21.6122
((((.(((((((	chr9:99539971-99540261(-)$1	1	68	80	16.4081
....)))).))(	chr1:11119502-11119832(-)$1	1	141	153	17.2244
.((((..((((.	chr20:60709623-60709874(+)$1	1	88	100	21.2040
.(.(((.((...	chr9:139743190-139743462(+)$1	1	91	103	17.0204
))))))))).).	chr2:74757004-74757309(+)$1	1	143	155	21.6122
((.((((.((((	chr19:1104600-1104870(+)$1	1	126	138	17.0204
.)))))))..((	chr17:235820-236109(-)$1	1	38	50	21.6122
((((((((.(.(	chr8:145691389-145691673(+)$1	1	3	15	19.6734
(((((((.((((	chr6:348998-349293(+)$1	1	2	14	22.1224
))..))))))))	chr6:33588884-33589209(+)$1	1	250	262	20.8979
)))))))))(((	chr12:122238034-122238277(-)$1	1	203	215	18.1428
))).))))))..	chr9:139917973-139918252(-)$1	1	266	278	21.8163
))))))))..))	chr13:52026815-52027086(-)$1	1	61	73	20.1836
((((.(.((.((	chr7:47621100-47621428(-)$1	1	167	179	18.1428
)))(((.(((((	chrX:70280419-70280702(-)$1	1	60	72	19.7755
.((((..(((((	chr17:36955857-36956130(-)$1	1	5	17	17.1224
...(((..((((	chr1:11721789-11722086(+)$1	1	139	151	20.1836
(((((((..((.	chr12:16500604-16500820(+)$1	1	94	106	17.3265
((.(.(((((((	chr16:87738654-87738937(-)$1	1	148	160	19.3673
..))))))))))	chr17:7477081-7477305(+)$1	1	174	186	19.6734
.(((((((((((	chr16:2579709-2579995(+)$1	1	100	112	20.0816
)))))))))...	chr5:175307410-175307689(+)$1	1	145	157	18.7551
)..((((((.((	chr7:1585608-1585882(-)$1	1	129	141	19.7755
(((.(((((.((	chr19:10464384-10464628(-)$1	1	59	71	17.6326
.)))))))))))	chr3:100428492-100428742(+)$1	1	222	234	18.5510
)))...)))..)	chr11:65374346-65374609(-)$1	1	116	128	17.5306
))))..)))...	chr21:34942009-34942249(+)$1	1	44	56	19.7755
))))))))))).	chr9:139743590-139743811(+)$1	1	87	99	16.2040
((((((.(((((	chr4:763856-764144(-)$1	1	49	61	19.5714

#PSSM
G : 0.71	g : 0.18	C : 0.04	A : 0.04	U : 0.02	
G : 0.67	g : 0.18	C : 0.10	U : 0.04	
C : 0.67	c : 0.16	G : 0.10	A : 0.02	U : 0.02	a : 0.02	
U : 0.48	G : 0.20	C : 0.10	g : 0.08	u : 0.06	c : 0.04	A : 0.02	
G : 0.75	g : 0.18	A : 0.04	C : 0.02	
G : 0.79	g : 0.18	U : 0.02	
G : 0.67	g : 0.18	C : 0.08	A : 0.04	U : 0.02	
C : 0.42	G : 0.28	c : 0.16	U : 0.06	A : 0.04	g : 0.02	
U : 0.57	G : 0.12	u : 0.10	C : 0.08	g : 0.08	A : 0.04	
G : 0.77	g : 0.16	U : 0.04	c : 0.02	
G : 0.75	g : 0.14	C : 0.04	c : 0.02	a : 0.02	A : 0.02	
G : 0.69	g : 0.14	C : 0.10	c : 0.04	A : 0.02	

#score	938.6938775510208
#seq	49
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_transcript_m1_run2.nuc.txt

#NT
CUCCU	chr2:27264033-27264289(+)$1	256	89	94	15.0000
CUCCU	chr3:184035133-184035362(+)$1	229	109	114	15.0000
CUCCU	chr10:102120481-102120703(+)$1	222	34	39	15.0000
CUCCU	chr3:47629615-47629892(-)$1	277	156	161	15.0000
cuccu	chr22:17094887-17095117(+)$1	230	29	34	15.0000
CUCCU	chr12:124839883-124840218(-)$1	335	63	68	15.0000
CUCCU	chr12:54066295-54066526(-)$1	231	99	104	15.0000
CUCCU	chr14:99976392-99976644(+)$1	252	7	12	15.0000
CUCCU	chr10:102122360-102122597(+)$1	237	13	18	15.0000
cUCCU	chr16:4740582-4740875(+)$1	293	77	82	15.0000
CUCCU	chr8:141536437-141536701(-)$1	264	117	122	15.0000
CUCCU	chr1:11734478-11734744(-)$1	266	121	126	15.0000
CUCCU	chr16:30678629-30678860(+)$1	231	44	49	15.0000
CUCCU	chr19:48886042-48886289(-)$1	247	174	179	15.0000
CUCCU	chr9:115337225-115337527(+)$1	302	184	189	15.0000
CUCCU	chr15:41571550-41571807(+)$1	257	92	97	15.0000
CUCCU	chrX:47070399-47070633(+)$1	234	28	33	15.0000
CUCCU	chr14:100808648-100808873(-)$1	225	93	98	15.0000
CUCCU	chrX:44928859-44929160(+)$1	301	137	142	15.0000
CUCCU	chr11:5290726-5290933(-)$1	207	28	33	15.0000
CUCCU	chr19:2269673-2269921(+)$1	248	29	34	15.0000
CUCCU	chr12:7045191-7045463(+)$1	272	266	271	15.0000
CUCCU	chr11:117152696-117153006(+)$1	310	23	28	15.0000
CUCCU	chr16:58055036-58055302(+)$1	266	23	28	15.0000
CUCCU	chr12:7045622-7045881(+)$1	259	141	146	15.0000
CUCCU	chr6:34213474-34213678(+)$1	204	35	40	15.0000
CUCCU	chr4:2251992-2252324(-)$1	332	68	73	15.0000
CUCCU	chr11:61734808-61735025(-)$1	217	112	117	15.0000
CUCCU	chr3:49397317-49397553(-)$1	236	128	133	15.0000
CUCCU	chr5:139908001-139908304(+)$1	303	180	185	15.0000
CUCCU	chr10:45951532-45951795(-)$1	263	5	10	15.0000
CUCCU	chr19:2037967-2038228(-)$1	261	85	90	15.0000
CUCCU	chr19:6440177-6440426(-)$1	249	126	131	15.0000
CUCCU	chr11:85694855-85695110(-)$1	255	100	105	15.0000
CUCCU	chr12:6857163-6857393(-)$1	230	116	121	15.0000
CUCCU	chr9:115095762-115095992(-)$1	230	96	101	15.0000
CUCCU	chr11:118964829-118965076(-)$1	247	167	172	15.0000
CUCCU	chr8:101719106-101719316(-)$1	210	127	132	15.0000
CUCCU	chr2:71213082-71213369(-)$1	287	21	26	15.0000
CUCCU	chr16:31123497-31123775(+)$1	278	265	270	15.0000
CUCCU	chr3:100455364-100455659(+)$1	295	67	72	15.0000
CUCCU	chr11:119207060-119207277(+)$1	217	77	82	15.0000
CUCCU	chr6:34213427-34213663(+)$1	236	82	87	15.0000
CUCCU	chr19:3061071-3061326(-)$1	255	2	7	15.0000
CUCCU	chr6:53213537-53213778(-)$1	241	64	69	15.0000
CUCCU	chr1:33238873-33239136(+)$1	263	134	139	15.0000
CUCCU	chrX:153664337-153664593(+)$1	256	174	179	15.0000
CUCCU	chr7:143079395-143079618(+)$1	223	92	97	15.0000
CUCCU	chr17:41166983-41167229(-)$1	246	38	43	15.0000
CUCCU	chr22:21804322-21804604(+)$1	282	180	185	15.0000
CUCCU	chr5:175816252-175816523(+)$1	271	71	76	15.0000
CUCCU	chr16:30673928-30674241(+)$1	313	113	118	15.0000
CUCCU	chr11:65119774-65120030(+)$1	256	27	32	15.0000
CUCCU	chr12:51189600-51189888(+)$1	288	144	149	15.0000
CUCCU	chr4:83763483-83763719(-)$1	236	72	77	15.0000
CUCCU	chr8:145152234-145152491(+)$1	257	149	154	15.0000
CUCCU	chr16:88697777-88698050(+)$1	273	219	224	15.0000
CUCCU	chr19:6440988-6441223(-)$1	235	133	138	15.0000
CUCCU	chr4:83748486-83748758(-)$1	272	214	219	15.0000
CUCCU	chr10:52103465-52103711(-)$1	246	14	19	15.0000

#otherMatches

#Struct PSSM
cccee	chr18:23637473-23637729(-)$1	256	132	137	15.0000
d[ccc	chr2:27264033-27264289(+)$1	256	89	94	15.0000
dbb]c	chr3:184035133-184035362(+)$1	229	109	114	15.0000
FFF{E	chr10:102120481-102120703(+)$1	222	34	39	15.0000
b22dd	chr3:47629615-47629892(-)$1	277	156	161	15.0000
###gg	chr22:17094887-17095117(+)$1	230	29	34	15.0000
$$$$d	chr12:124839883-124840218(-)$1	335	63	68	15.0000
]dddd	chr12:54066295-54066526(-)$1	231	99	104	15.0000
CCCCc	chr14:99976392-99976644(+)$1	252	7	12	15.0000
ccc[c	chr10:102122360-102122597(+)$1	237	13	18	15.0000
qqqqc	chr16:4740582-4740875(+)$1	293	77	82	15.0000
c::::	chr8:141536437-141536701(-)$1	264	117	122	15.0000
iiiii	chr1:11734478-11734744(-)$1	266	121	126	15.0000
iiiii	chr16:30678629-30678860(+)$1	231	44	49	15.0000
EEEEE	chr19:48886042-48886289(-)$1	247	174	179	15.0000
YDDDD	chr9:115337225-115337527(+)$1	302	184	189	15.0000
^^^^^	chr15:41571550-41571807(+)$1	257	92	97	15.0000
:::::	chrX:47070399-47070633(+)$1	234	28	33	15.0000
:::::	chr14:100808648-100808873(-)$1	225	93	98	15.0000
:::::	chrX:44928859-44929160(+)$1	301	137	142	15.0000
c]bb2	chr11:5290726-5290933(-)$1	207	28	33	15.0000
cccbb	chr19:2269673-2269921(+)$1	248	29	34	15.0000
:::::	chr12:7045191-7045463(+)$1	272	266	271	15.0000
:FFFF	chr11:117152696-117153006(+)$1	310	23	28	15.0000
ggqqq	chr16:58055036-58055302(+)$1	266	23	28	15.0000
:::::	chr12:7045622-7045881(+)$1	259	141	146	15.0000
:::::	chr6:34213474-34213678(+)$1	204	35	40	15.0000
b]a33	chr4:2251992-2252324(-)$1	332	68	73	15.0000
edddd	chr11:61734808-61735025(-)$1	217	112	117	15.0000
:dddd	chr3:49397317-49397553(-)$1	236	128	133	15.0000
ffff]	chr5:139908001-139908304(+)$1	303	180	185	15.0000
HHHHH	chr10:45951532-45951795(-)$1	263	5	10	15.0000
F::::	chr19:2037967-2038228(-)$1	261	85	90	15.0000
fffff	chr19:6440177-6440426(-)$1	249	126	131	15.0000
FFFFF	chr11:85694855-85695110(-)$1	255	100	105	15.0000
MMMMC	chr12:6857163-6857393(-)$1	230	116	121	15.0000
^^^^^	chr9:115095762-115095992(-)$1	230	96	101	15.0000
dd555	chr11:118964829-118965076(-)$1	247	167	172	15.0000
ccc[c	chr8:101719106-101719316(-)$1	210	127	132	15.0000
btttt	chr2:71213082-71213369(-)$1	287	21	26	15.0000
D????	chr16:31123497-31123775(+)$1	278	265	270	15.0000
]eeee	chr3:100455364-100455659(+)$1	295	67	72	15.0000
mmmdd	chr11:119207060-119207277(+)$1	217	77	82	15.0000
[bbmm	chr6:34213427-34213663(+)$1	236	82	87	15.0000
B{CCC	chr19:3061071-3061326(-)$1	255	2	7	15.0000
qqqqq	chr6:53213537-53213778(-)$1	241	64	69	15.0000
EEGGG	chr1:33238873-33239136(+)$1	263	134	139	15.0000
c]ddd	chrX:153664337-153664593(+)$1	256	174	179	15.0000
=====	chr7:143079395-143079618(+)$1	223	92	97	15.0000
ffffl	chr17:41166983-41167229(-)$1	246	38	43	15.0000
fffcc	chr22:21804322-21804604(+)$1	282	180	185	15.0000
:::::	chr5:175816252-175816523(+)$1	271	71	76	15.0000
d::::	chr16:30673928-30674241(+)$1	313	113	118	15.0000
3eeee	chr11:65119774-65120030(+)$1	256	27	32	15.0000
=====	chr12:51189600-51189888(+)$1	288	144	149	15.0000
c4444	chr4:83763483-83763719(-)$1	236	72	77	15.0000
eeeee	chr8:145152234-145152491(+)$1	257	149	154	15.0000
bb22d	chr16:88697777-88698050(+)$1	273	219	224	15.0000
]ccc7	chr19:6440988-6441223(-)$1	235	133	138	15.0000
d]ccc	chr4:83748486-83748758(-)$1	272	214	219	15.0000
DDDDC	chr10:52103465-52103711(-)$1	246	14	19	15.0000

#DB
)))((	chr18:23637473-23637729(-)$1	1	132	137	15.0000
(.(((	chr2:27264033-27264289(+)$1	1	89	94	15.0000
))).)	chr3:184035133-184035362(+)$1	1	109	114	15.0000
(((.(	chr10:102120481-102120703(+)$1	1	34	39	15.0000
)..))	chr3:47629615-47629892(-)$1	1	156	161	15.0000
...((	chr22:17094887-17095117(+)$1	1	29	34	15.0000
....(	chr12:124839883-124840218(-)$1	1	63	68	15.0000
.))))	chr12:54066295-54066526(-)$1	1	99	104	15.0000
(((((	chr14:99976392-99976644(+)$1	1	7	12	15.0000
(((.(	chr10:102122360-102122597(+)$1	1	13	18	15.0000
....)	chr16:4740582-4740875(+)$1	1	77	82	15.0000
)....	chr8:141536437-141536701(-)$1	1	117	122	15.0000
)))))	chr1:11734478-11734744(-)$1	1	121	126	15.0000
(((((	chr16:30678629-30678860(+)$1	1	44	49	15.0000
(((((	chr19:48886042-48886289(-)$1	1	174	179	15.0000
.))))	chr9:115337225-115337527(+)$1	1	184	189	15.0000
.....	chr15:41571550-41571807(+)$1	1	92	97	15.0000
.....	chrX:47070399-47070633(+)$1	1	28	33	15.0000
.....	chr14:100808648-100808873(-)$1	1	93	98	15.0000
.....	chrX:44928859-44929160(+)$1	1	137	142	15.0000
).)).	chr11:5290726-5290933(-)$1	1	28	33	15.0000
(((((	chr19:2269673-2269921(+)$1	1	29	34	15.0000
.....	chr12:7045191-7045463(+)$1	1	266	271	15.0000
.((((	chr11:117152696-117153006(+)$1	1	23	28	15.0000
((...	chr16:58055036-58055302(+)$1	1	23	28	15.0000
.....	chr12:7045622-7045881(+)$1	1	141	146	15.0000
.....	chr6:34213474-34213678(+)$1	1	35	40	15.0000
).)..	chr4:2251992-2252324(-)$1	1	68	73	15.0000
(((((	chr11:61734808-61735025(-)$1	1	112	117	15.0000
.((((	chr3:49397317-49397553(-)$1	1	128	133	15.0000
)))).	chr5:139908001-139908304(+)$1	1	180	185	15.0000
(((((	chr10:45951532-45951795(-)$1	1	5	10	15.0000
(....	chr19:2037967-2038228(-)$1	1	85	90	15.0000
)))))	chr19:6440177-6440426(-)$1	1	126	131	15.0000
(((((	chr11:85694855-85695110(-)$1	1	100	105	15.0000
....(	chr12:6857163-6857393(-)$1	1	116	121	15.0000
.....	chr9:115095762-115095992(-)$1	1	96	101	15.0000
))...	chr11:118964829-118965076(-)$1	1	167	172	15.0000
(((.(	chr8:101719106-101719316(-)$1	1	127	132	15.0000
(....	chr2:71213082-71213369(-)$1	1	21	26	15.0000
)....	chr16:31123497-31123775(+)$1	1	265	270	15.0000
.))))	chr3:100455364-100455659(+)$1	1	67	72	15.0000
...))	chr11:119207060-119207277(+)$1	1	77	82	15.0000
.((..	chr6:34213427-34213663(+)$1	1	82	87	15.0000
(.(((	chr19:3061071-3061326(-)$1	1	2	7	15.0000
.....	chr6:53213537-53213778(-)$1	1	64	69	15.0000
(((((	chr1:33238873-33239136(+)$1	1	134	139	15.0000
).)))	chrX:153664337-153664593(+)$1	1	174	179	15.0000
)))))	chr7:143079395-143079618(+)$1	1	92	97	15.0000
((((.	chr17:41166983-41167229(-)$1	1	38	43	15.0000
)))((	chr22:21804322-21804604(+)$1	1	180	185	15.0000
.....	chr5:175816252-175816523(+)$1	1	71	76	15.0000
)....	chr16:30673928-30674241(+)$1	1	113	118	15.0000
.))))	chr11:65119774-65120030(+)$1	1	27	32	15.0000
)))))	chr12:51189600-51189888(+)$1	1	144	149	15.0000
)....	chr4:83763483-83763719(-)$1	1	72	77	15.0000
)))))	chr8:145152234-145152491(+)$1	1	149	154	15.0000
))..)	chr16:88697777-88698050(+)$1	1	219	224	15.0000
.))).	chr19:6440988-6441223(-)$1	1	133	138	15.0000
).)))	chr4:83748486-83748758(-)$1	1	214	219	15.0000
(((((	chr10:52103465-52103711(-)$1	1	14	19	15.0000

#PSSM
C : 0.96	c : 0.03	
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	

#score	915.0000000000001
#seq	61
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_UTR_m2_run2.nuc.txt

#NT
GGAG	chr1:150192905-150193168(-)$1	263	110	114	12.0000
GGAG	chr2:63279888-63280153(+)$1	265	169	173	12.0000
GGAG	chr1:156352414-156352681(+)$1	267	127	131	12.0000
GGAG	chr17:42273306-42273568(-)$1	262	5	9	12.0000
GGAG	chr20:33734622-33734904(-)$1	282	63	67	12.0000
GGAG	chr16:29815916-29816159(+)$1	243	119	123	12.0000
GGAG	chr22:42910541-42910791(-)$1	250	76	80	12.0000
GGAG	chr16:8904786-8905054(+)$1	268	119	123	12.0000
GGAG	chr14:89029866-89030156(+)$1	290	158	162	12.0000
GGAG	chr17:76167637-76167952(+)$1	315	132	136	12.0000
GGAG	chr17:1648167-1648420(+)$1	253	219	223	12.0000
GGAG	chr16:8891676-8891946(+)$1	270	165	169	12.0000
GGAG	chr1:8075229-8075541(-)$1	312	42	46	12.0000
GGAG	chr19:8275456-8275708(+)$1	252	132	136	12.0000
GGAG	chr16:85838603-85838854(+)$1	251	6	10	12.0000
GGAG	chr15:70387845-70388113(-)$1	268	84	88	12.0000
GGAG	chr17:80765396-80765681(+)$1	285	234	238	12.0000
GGAG	chr1:28920020-28920332(+)$1	312	19	23	12.0000
GGAG	chr19:10505969-10506195(-)$1	226	5	9	12.0000
GGAG	chr17:38152490-38152730(+)$1	240	7	11	12.0000
GGAG	chr14:74756003-74756374(-)$1	371	57	61	12.0000
GGAG	chr1:15978065-15978338(+)$1	273	58	62	12.0000
GGAG	chr19:36257692-36258101(+)$1	409	174	178	12.0000
GGAG	chr19:2040051-2040328(-)$1	277	160	164	12.0000
GGAG	chr14:89029412-89029625(+)$1	213	67	71	12.0000
GGAG	chr11:66407489-66407734(+)$1	245	46	50	12.0000
GGAG	chr3:49456475-49456773(-)$1	298	14	18	12.0000
GGAG	chr16:28847470-28847713(+)$1	243	5	9	12.0000
GGAG	chr1:43853937-43854257(-)$1	320	163	167	12.0000
GGAG	chr4:103730897-103731145(-)$1	248	25	29	12.0000
GGAG	chr4:99996069-99996362(-)$1	293	213	217	12.0000
GGAG	chr2:65454984-65455230(+)$1	246	122	126	12.0000
GGAG	chr16:88724985-88725227(-)$1	242	49	53	12.0000
GGAG	chr3:49137154-49137457(-)$1	303	269	273	12.0000
GGAG	chr15:72511271-72511586(-)$1	315	57	61	12.0000
GGAG	chr19:16296266-16296520(+)$1	254	47	51	12.0000
GGAG	chr12:58109630-58110005(+)$1	375	91	95	12.0000
GGAG	chr4:2514037-2514305(+)$1	268	65	69	12.0000
GGAG	chr1:33117406-33117666(+)$1	260	28	32	12.0000
GGAG	chr11:46740791-46741000(+)$1	209	78	82	12.0000
GGAG	chr12:122296479-122296725(-)$1	246	184	188	12.0000
GGAG	chr17:20914507-20914797(-)$1	290	123	127	12.0000
GGAG	chr22:37904561-37904814(-)$1	253	34	38	12.0000
GGAG	chr3:185638834-185639123(-)$1	289	117	121	12.0000
GGAG	chr16:8988755-8989008(-)$1	253	162	166	12.0000
GGAG	chr7:1199457-1199702(-)$1	245	16	20	12.0000
GGAG	chr2:219677480-219677801(+)$1	321	95	99	12.0000
GGAG	chr12:112229691-112229996(+)$1	305	201	205	12.0000
GGAG	chr12:53343260-53343490(+)$1	230	13	17	12.0000
ggag	chr1:155532422-155532675(-)$1	253	46	50	12.0000
GGAG	chr16:8952064-8952313(-)$1	249	18	22	12.0000
GGAG	chr7:99697585-99697827(-)$1	242	220	224	12.0000
GGAG	chr19:5931414-5931689(-)$1	275	16	20	12.0000
GGAG	chr3:53262881-53263163(-)$1	282	203	207	12.0000
ggag	chr2:233561999-233562255(+)$1	256	2	6	12.0000
GGAG	chr2:69969197-69969473(+)$1	276	88	92	12.0000
GGAG	chr17:39846350-39846580(+)$1	230	31	35	12.0000
GGAG	chr1:182357717-182358002(-)$1	285	5	9	12.0000
GGAG	chr3:12632350-12632618(-)$1	268	259	263	12.0000
GGAG	chr20:33866873-33867143(-)$1	270	234	238	12.0000
GGAG	chr5:154238276-154238573(+)$1	297	80	84	12.0000
GGAG	chr12:58109805-58110065(+)$1	260	25	29	12.0000
GGAG	chr2:73470988-73471270(+)$1	282	42	46	12.0000
GGAG	chr2:101619011-101619280(+)$1	269	88	92	12.0000
GGAG	chr16:11933690-11933909(-)$1	219	66	70	12.0000
GGAG	chr3:38415885-38416175(+)$1	290	89	93	12.0000
GGAG	chr16:22334150-22334400(+)$1	250	202	206	12.0000
GGAG	chr7:1570429-1570702(+)$1	273	21	25	12.0000
GGAG	chr16:278258-278544(-)$1	286	181	185	12.0000
GGAG	chr12:121000767-121001012(+)$1	245	21	25	12.0000
GGAG	chr16:89627670-89627912(+)$1	242	93	97	12.0000
ggag	chr2:29169486-29169754(+)$1	268	2	6	12.0000
GGAG	chr1:151220203-151220471(+)$1	268	38	42	12.0000
GGAG	chr2:27597174-27597439(+)$1	265	92	96	12.0000
GGAG	chr7:5663544-5663798(-)$1	254	77	81	12.0000
GGAG	chr17:48627378-48627720(+)$1	342	121	125	12.0000
GGAG	chr21:40177943-40178183(+)$1	240	150	154	12.0000
GGAG	chr6:32123301-32123583(+)$1	282	255	259	12.0000
GGAG	chr1:110198945-110199206(+)$1	261	8	12	12.0000
GGAG	chr20:2639091-2639379(-)$1	288	170	174	12.0000
GGAG	chr2:238486509-238486753(-)$1	244	28	32	12.0000

#otherMatches

#Struct PSSM
b:dd	chr7:931943-932198(+)$1	255	64	68	12.0000
oooo	chr1:150192905-150193168(-)$1	263	110	114	12.0000
Eddd	chr2:63279888-63280153(+)$1	265	169	173	12.0000
==:e	chr1:156352414-156352681(+)$1	267	127	131	12.0000
====	chr17:42273306-42273568(-)$1	262	5	9	12.0000
DDDD	chr20:33734622-33734904(-)$1	282	63	67	12.0000
cc[g	chr16:29815916-29816159(+)$1	243	119	123	12.0000
bb::	chr22:42910541-42910791(-)$1	250	76	80	12.0000
ff]d	chr16:8904786-8905054(+)$1	268	119	123	12.0000
ffff	chr14:89029866-89030156(+)$1	290	158	162	12.0000
LLLJ	chr17:76167637-76167952(+)$1	315	132	136	12.0000
YYJJ	chr17:1648167-1648420(+)$1	253	219	223	12.0000
eecc	chr16:8891676-8891946(+)$1	270	165	169	12.0000
CCKK	chr1:8075229-8075541(-)$1	312	42	46	12.0000
cooo	chr19:8275456-8275708(+)$1	252	132	136	12.0000
MMMH	chr16:85838603-85838854(+)$1	251	6	10	12.0000
ffff	chr15:70387845-70388113(-)$1	268	84	88	12.0000
DDDD	chr17:80765396-80765681(+)$1	285	234	238	12.0000
FFFF	chr1:28920020-28920332(+)$1	312	19	23	12.0000
Dccc	chr19:10505969-10506195(-)$1	226	5	9	12.0000
CCee	chr17:38152490-38152730(+)$1	240	7	11	12.0000
beee	chr14:74756003-74756374(-)$1	371	57	61	12.0000
cc::	chr1:15978065-15978338(+)$1	273	58	62	12.0000
HH}H	chr19:36257692-36258101(+)$1	409	174	178	12.0000
dddd	chr19:2040051-2040328(-)$1	277	160	164	12.0000
:::i	chr14:89029412-89029625(+)$1	213	67	71	12.0000
c22b	chr11:66407489-66407734(+)$1	245	46	50	12.0000
NNFF	chr3:49456475-49456773(-)$1	298	14	18	12.0000
GGGG	chr16:28847470-28847713(+)$1	243	5	9	12.0000
ccc!	chr1:43853937-43854257(-)$1	320	163	167	12.0000
EEEE	chr4:103730897-103731145(-)$1	248	25	29	12.0000
333b	chr4:99996069-99996362(-)$1	293	213	217	12.0000
FFFF	chr2:65454984-65455230(+)$1	246	122	126	12.0000
f!!d	chr16:88724985-88725227(-)$1	242	49	53	12.0000
cc22	chr3:49137154-49137457(-)$1	303	269	273	12.0000
LDDD	chr15:72511271-72511586(-)$1	315	57	61	12.0000
booo	chr19:16296266-16296520(+)$1	254	47	51	12.0000
cccc	chr12:58109630-58110005(+)$1	375	91	95	12.0000
dd""	chr4:2514037-2514305(+)$1	268	65	69	12.0000
HHHH	chr1:33117406-33117666(+)$1	260	28	32	12.0000
oooo	chr11:46740791-46741000(+)$1	209	78	82	12.0000
DDDD	chr12:122296479-122296725(-)$1	246	184	188	12.0000
EEEE	chr17:20914507-20914797(-)$1	290	123	127	12.0000
ffff	chr22:37904561-37904814(-)$1	253	34	38	12.0000
cppp	chr3:185638834-185639123(-)$1	289	117	121	12.0000
ff::	chr16:8988755-8989008(-)$1	253	162	166	12.0000
EEDD	chr7:1199457-1199702(-)$1	245	16	20	12.0000
&&&&	chr2:219677480-219677801(+)$1	321	95	99	12.0000
ll==	chr12:112229691-112229996(+)$1	305	201	205	12.0000
FFFF	chr12:53343260-53343490(+)$1	230	13	17	12.0000
::::	chr1:155532422-155532675(-)$1	253	46	50	12.0000
ffff	chr16:8952064-8952313(-)$1	249	18	22	12.0000
YDDD	chr7:99697585-99697827(-)$1	242	220	224	12.0000
eeec	chr19:5931414-5931689(-)$1	275	16	20	12.0000
c!!e	chr3:53262881-53263163(-)$1	282	203	207	12.0000
GGGG	chr2:233561999-233562255(+)$1	256	2	6	12.0000
eeee	chr2:69969197-69969473(+)$1	276	88	92	12.0000
ddd4	chr17:39846350-39846580(+)$1	230	31	35	12.0000
eeee	chr1:182357717-182358002(-)$1	285	5	9	12.0000
2a22	chr3:12632350-12632618(-)$1	268	259	263	12.0000
ddd]	chr20:33866873-33867143(-)$1	270	234	238	12.0000
}DDD	chr5:154238276-154238573(+)$1	297	80	84	12.0000
::ee	chr12:58109805-58110065(+)$1	260	25	29	12.0000
:fff	chr2:73470988-73471270(+)$1	282	42	46	12.0000
dddd	chr2:101619011-101619280(+)$1	269	88	92	12.0000
===]	chr16:11933690-11933909(-)$1	219	66	70	12.0000
dddf	chr3:38415885-38416175(+)$1	290	89	93	12.0000
mmmm	chr16:22334150-22334400(+)$1	250	202	206	12.0000
cc[e	chr7:1570429-1570702(+)$1	273	21	25	12.0000
JJJJ	chr16:278258-278544(-)$1	286	181	185	12.0000
dd[f	chr12:121000767-121001012(+)$1	245	21	25	12.0000
eeoo	chr16:89627670-89627912(+)$1	242	93	97	12.0000
EEEE	chr2:29169486-29169754(+)$1	268	2	6	12.0000
eeee	chr1:151220203-151220471(+)$1	268	38	42	12.0000
bb!!	chr2:27597174-27597439(+)$1	265	92	96	12.0000
cccd	chr7:5663544-5663798(-)$1	254	77	81	12.0000
eeee	chr17:48627378-48627720(+)$1	342	121	125	12.0000
nnnc	chr21:40177943-40178183(+)$1	240	150	154	12.0000
HHHH	chr6:32123301-32123583(+)$1	282	255	259	12.0000
::ee	chr1:110198945-110199206(+)$1	261	8	12	12.0000
EEDD	chr20:2639091-2639379(-)$1	288	170	174	12.0000
EEEE	chr2:238486509-238486753(-)$1	244	28	32	12.0000

#DB
).((	chr7:931943-932198(+)$1	1	64	68	12.0000
....	chr1:150192905-150193168(-)$1	1	110	114	12.0000
)(((	chr2:63279888-63280153(+)$1	1	169	173	12.0000
)).(	chr1:156352414-156352681(+)$1	1	127	131	12.0000
((((	chr17:42273306-42273568(-)$1	1	5	9	12.0000
((((	chr20:33734622-33734904(-)$1	1	63	67	12.0000
((.(	chr16:29815916-29816159(+)$1	1	119	123	12.0000
))..	chr22:42910541-42910791(-)$1	1	76	80	12.0000
)).)	chr16:8904786-8905054(+)$1	1	119	123	12.0000
))))	chr14:89029866-89030156(+)$1	1	158	162	12.0000
...(	chr17:76167637-76167952(+)$1	1	132	136	12.0000
..))	chr17:1648167-1648420(+)$1	1	219	223	12.0000
))((	chr16:8891676-8891946(+)$1	1	165	169	12.0000
((..	chr1:8075229-8075541(-)$1	1	42	46	12.0000
(...	chr19:8275456-8275708(+)$1	1	132	136	12.0000
...(	chr16:85838603-85838854(+)$1	1	6	10	12.0000
((((	chr15:70387845-70388113(-)$1	1	84	88	12.0000
))))	chr17:80765396-80765681(+)$1	1	234	238	12.0000
((((	chr1:28920020-28920332(+)$1	1	19	23	12.0000
((((	chr19:10505969-10506195(-)$1	1	5	9	12.0000
((((	chr17:38152490-38152730(+)$1	1	7	11	12.0000
))))	chr14:74756003-74756374(-)$1	1	57	61	12.0000
))..	chr1:15978065-15978338(+)$1	1	58	62	12.0000
)).)	chr19:36257692-36258101(+)$1	1	174	178	12.0000
((((	chr19:2040051-2040328(-)$1	1	160	164	12.0000
...(	chr14:89029412-89029625(+)$1	1	67	71	12.0000
)..)	chr11:66407489-66407734(+)$1	1	46	50	12.0000
..((	chr3:49456475-49456773(-)$1	1	14	18	12.0000
((((	chr16:28847470-28847713(+)$1	1	5	9	12.0000
(((.	chr1:43853937-43854257(-)$1	1	163	167	12.0000
((((	chr4:103730897-103731145(-)$1	1	25	29	12.0000
...)	chr4:99996069-99996362(-)$1	1	213	217	12.0000
((((	chr2:65454984-65455230(+)$1	1	122	126	12.0000
(..(	chr16:88724985-88725227(-)$1	1	49	53	12.0000
))..	chr3:49137154-49137457(-)$1	1	269	273	12.0000
.(((	chr15:72511271-72511586(-)$1	1	57	61	12.0000
(...	chr19:16296266-16296520(+)$1	1	47	51	12.0000
((((	chr12:58109630-58110005(+)$1	1	91	95	12.0000
((..	chr4:2514037-2514305(+)$1	1	65	69	12.0000
((((	chr1:33117406-33117666(+)$1	1	28	32	12.0000
....	chr11:46740791-46741000(+)$1	1	78	82	12.0000
))))	chr12:122296479-122296725(-)$1	1	184	188	12.0000
))))	chr17:20914507-20914797(-)$1	1	123	127	12.0000
((((	chr22:37904561-37904814(-)$1	1	34	38	12.0000
(...	chr3:185638834-185639123(-)$1	1	117	121	12.0000
))..	chr16:8988755-8989008(-)$1	1	162	166	12.0000
((((	chr7:1199457-1199702(-)$1	1	16	20	12.0000
....	chr2:219677480-219677801(+)$1	1	95	99	12.0000
..))	chr12:112229691-112229996(+)$1	1	201	205	12.0000
((((	chr12:53343260-53343490(+)$1	1	13	17	12.0000
....	chr1:155532422-155532675(-)$1	1	46	50	12.0000
((((	chr16:8952064-8952313(-)$1	1	18	22	12.0000
.)))	chr7:99697585-99697827(-)$1	1	220	224	12.0000
))))	chr19:5931414-5931689(-)$1	1	16	20	12.0000
(..(	chr3:53262881-53263163(-)$1	1	203	207	12.0000
((((	chr2:233561999-233562255(+)$1	1	2	6	12.0000
))))	chr2:69969197-69969473(+)$1	1	88	92	12.0000
))).	chr17:39846350-39846580(+)$1	1	31	35	12.0000
((((	chr1:182357717-182358002(-)$1	1	5	9	12.0000
.)..	chr3:12632350-12632618(-)$1	1	259	263	12.0000
))).	chr20:33866873-33867143(-)$1	1	234	238	12.0000
.)))	chr5:154238276-154238573(+)$1	1	80	84	12.0000
..((	chr12:58109805-58110065(+)$1	1	25	29	12.0000
.(((	chr2:73470988-73471270(+)$1	1	42	46	12.0000
((((	chr2:101619011-101619280(+)$1	1	88	92	12.0000
))).	chr16:11933690-11933909(-)$1	1	66	70	12.0000
((((	chr3:38415885-38416175(+)$1	1	89	93	12.0000
....	chr16:22334150-22334400(+)$1	1	202	206	12.0000
((.(	chr7:1570429-1570702(+)$1	1	21	25	12.0000
))))	chr16:278258-278544(-)$1	1	181	185	12.0000
((.(	chr12:121000767-121001012(+)$1	1	21	25	12.0000
((..	chr16:89627670-89627912(+)$1	1	93	97	12.0000
((((	chr2:29169486-29169754(+)$1	1	2	6	12.0000
((((	chr1:151220203-151220471(+)$1	1	38	42	12.0000
((..	chr2:27597174-27597439(+)$1	1	92	96	12.0000
)))(	chr7:5663544-5663798(-)$1	1	77	81	12.0000
((((	chr17:48627378-48627720(+)$1	1	121	125	12.0000
...)	chr21:40177943-40178183(+)$1	1	150	154	12.0000
))))	chr6:32123301-32123583(+)$1	1	255	259	12.0000
..((	chr1:110198945-110199206(+)$1	1	8	12	12.0000
((((	chr20:2639091-2639379(-)$1	1	170	174	12.0000
((((	chr2:238486509-238486753(-)$1	1	28	32	12.0000

#PSSM
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	

#score	984.0000000000001
#seq	82
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_transcript_m2_run1.nuc.txt

#NT
UCU	chr1:33475844-33476124(-)$1	280	31	34	8.9999
UCU	chr9:123619803-123620053(-)$1	250	13	16	8.9999
ucu	chr16:23476821-23477064(-)$1	243	1	4	8.9999
UCU	chr9:132897663-132897984(+)$1	321	25	28	8.9999
UCU	chr7:75162674-75162927(-)$1	253	15	18	8.9999
UCU	chr16:24229877-24230127(+)$1	250	22	25	8.9999
UCU	chr7:98993760-98994000(-)$1	240	22	25	8.9999
UCU	chr10:72521458-72521737(+)$1	279	0	3	8.9999
UCU	chr17:41196297-41196558(-)$1	261	134	137	8.9999
UCU	chr8:102700394-102700638(-)$1	244	4	7	8.9999
UCU	chr1:33475680-33475907(-)$1	227	129	132	8.9999
UCU	chr7:150067468-150067708(+)$1	240	42	45	8.9999
UCU	chr2:69549819-69550090(-)$1	271	97	100	8.9999
UCU	chr1:28608357-28608624(+)$1	267	19	22	8.9999
UCU	chr11:65765648-65765902(-)$1	254	7	10	8.9999
UCU	chr19:39874208-39874489(+)$1	281	27	30	8.9999
UCU	chr12:53908293-53908576(-)$1	283	27	30	8.9999
UCU	chr11:65192377-65192645(+)$1	268	146	149	8.9999
UCU	chr3:179117220-179117459(-)$1	239	155	158	8.9999
UCU	chr22:42981174-42981420(-)$1	246	123	126	8.9999
UCU	chr1:33789873-33790169(-)$1	296	120	123	8.9999
UCU	chr1:160183415-160183667(+)$1	252	16	19	8.9999
UCU	chr17:42473535-42473830(-)$1	295	83	86	8.9999
UCU	chr16:30751653-30751961(+)$1	308	23	26	8.9999
UCU	chr15:91463750-91464036(+)$1	286	51	54	8.9999
UCU	chr14:100800797-100801061(-)$1	264	2	5	8.9999
ucu	chr9:117406154-117406435(+)$1	281	34	37	8.9999
UCU	chr17:46940608-46940891(+)$1	283	5	8	8.9999
UCU	chr2:27249343-27249633(+)$1	290	115	118	8.9999
UCU	chr17:420923-421186(-)$1	263	89	92	8.9999
UCU	chrX:118377541-118377822(+)$1	281	6	9	8.9999
UCU	chr8:11700843-11701113(-)$1	270	69	72	8.9999
UCU	chr8:146279838-146280147(+)$1	309	0	3	8.9999
UCU	chr3:186793845-186794057(+)$1	212	35	38	8.9999
ucu	chr17:48459513-48459780(-)$1	267	29	32	8.9999
UCU	chr1:28864747-28865065(+)$1	318	37	40	8.9999
UCU	chr22:22276457-22276679(-)$1	222	21	24	8.9999
ucu	chr2:11584533-11584801(-)$1	268	8	11	8.9999
UCU	chr2:97260243-97260514(-)$1	271	28	31	8.9999
UCU	chr16:29678403-29678652(+)$1	249	44	47	8.9999
UCU	chr3:126754411-126754734(+)$1	323	215	218	8.9999
UCU	chr10:6275232-6275504(+)$1	272	27	30	8.9999
UCU	chr10:71161088-71161329(+)$1	241	81	84	8.9999
UCU	chr19:1038831-1039088(+)$1	257	79	82	8.9999
UCU	chr2:232673162-232673423(+)$1	261	6	9	8.9999
UCu	chr18:47918632-47918839(+)$1	207	38	41	8.9999
UCU	chr6:7882619-7882897(-)$1	278	38	41	8.9999
UCU	chr2:131809193-131809424(-)$1	231	172	175	8.9999
UCU	chr20:61920160-61920437(+)$1	277	14	17	8.9999
ucu	chr16:69496916-69497131(+)$1	215	61	64	8.9999
ucu	chr19:1038711-1038933(+)$1	222	75	78	8.9999
ucu	chr1:115313126-115313412(-)$1	286	83	86	8.9999
UCU	chr17:1422242-1422542(-)$1	300	40	43	8.9999
UCU	chr2:30382080-30382410(+)$1	330	81	84	8.9999
UCU	chr2:224741872-224742128(-)$1	256	63	66	8.9999
UCU	chr10:75010307-75010547(-)$1	240	4	7	8.9999
UCU	chr19:49376538-49376805(+)$1	267	7	10	8.9999
UCU	chr19:4360977-4361215(-)$1	238	171	174	8.9999
UCU	chr12:120649528-120649791(-)$1	263	0	3	8.9999
UCU	chr14:77254287-77254555(-)$1	268	23	26	8.9999
UCU	chr7:72397248-72397547(+)$1	299	8	11	8.9999
UCU	chr22:22118189-22118462(-)$1	273	5	8	8.9999
UCU	chr12:58214120-58214354(-)$1	234	25	28	8.9999
UCU	chr14:75369656-75369942(+)$1	286	67	70	8.9999
UCU	chr4:10076087-10076415(-)$1	328	28	31	8.9999
UCU	chr14:81941449-81941682(-)$1	233	75	78	8.9999
UCU	chr1:156712954-156713221(-)$1	267	25	28	8.9999
UCU	chrY:21153110-21153358(-)$1	248	155	158	8.9999
UCU	chr15:89442042-89442440(-)$1	398	46	49	8.9999
UCU	chr1:151555704-151555982(+)$1	278	16	19	8.9999
UCU	chr17:27206407-27206655(-)$1	248	26	29	8.9999
UCU	chr6:38122151-38122420(+)$1	269	35	38	8.9999
UCU	chr10:12163848-12164106(+)$1	258	33	36	8.9999
ucu	chr2:27002602-27002860(+)$1	258	5	8	8.9999
ucu	chr19:12986515-12986752(-)$1	237	68	71	8.9999
ucu	chr8:27144371-27144707(-)$1	336	41	44	8.9999
UCU	chr19:39398708-39398968(+)$1	260	131	134	8.9999
UCU	chr3:48199164-48199498(-)$1	334	53	56	8.9999
UCU	chr22:42481723-42481975(-)$1	252	42	45	8.9999
UCU	chr3:13358657-13358918(-)$1	261	4	7	8.9999
UCU	chr5:150089842-150090120(-)$1	278	16	19	8.9999
UCU	chr19:47712918-47713157(+)$1	239	141	144	8.9999
UCU	chr22:22051554-22051858(+)$1	304	99	102	8.9999
UCU	chr15:67493974-67494221(-)$1	247	30	33	8.9999
UCU	chr7:97836732-97836982(+)$1	250	68	71	8.9999
UCU	chr19:896965-897184(-)$1	219	16	19	8.9999
UCU	chr19:811283-811530(+)$1	247	39	42	8.9999
UCU	chr6:30708224-30708467(-)$1	243	54	57	8.9999
UCU	chr19:11256915-11257184(-)$1	269	51	54	8.9999
UCU	chr22:20133445-20133736(+)$1	291	18	21	8.9999
UCU	chr17:40732912-40733159(-)$1	247	43	46	8.9999
UCU	chr17:44833719-44834008(+)$1	289	21	24	8.9999
UCU	chr21:45176248-45176486(+)$1	238	94	97	8.9999
UCU	chr16:81744992-81745206(+)$1	214	20	23	8.9999
UCU	chr12:54789472-54789736(-)$1	264	52	55	8.9999
UCU	chr2:131905694-131905962(+)$1	268	101	104	8.9999
UCU	chr8:124221984-124222209(+)$1	225	13	16	8.9999
UCU	chr3:142838651-142838933(+)$1	282	66	69	8.9999

#otherMatches

#Struct PSSM
EEE	chr13:45007940-45008217(-)$1	277	2	5	8.9999
:::	chr1:33475844-33476124(-)$1	280	31	34	8.9999
:::	chr9:123619803-123620053(-)$1	250	13	16	8.9999
::C	chr16:23476821-23477064(-)$1	243	1	4	8.9999
===	chr9:132897663-132897984(+)$1	321	25	28	8.9999
::d	chr7:75162674-75162927(-)$1	253	15	18	8.9999
DDD	chr16:24229877-24230127(+)$1	250	22	25	8.9999
ggg	chr7:98993760-98994000(-)$1	240	22	25	8.9999
BB{	chr10:72521458-72521737(+)$1	279	0	3	8.9999
iii	chr17:41196297-41196558(-)$1	261	134	137	8.9999
:EE	chr8:102700394-102700638(-)$1	244	4	7	8.9999
odd	chr1:33475680-33475907(-)$1	227	129	132	8.9999
ddd	chr7:150067468-150067708(+)$1	240	42	45	8.9999
ggg	chr2:69549819-69550090(-)$1	271	97	100	8.9999
qqq	chr1:28608357-28608624(+)$1	267	19	22	8.9999
sss	chr11:65765648-65765902(-)$1	254	7	10	8.9999
H::	chr19:39874208-39874489(+)$1	281	27	30	8.9999
DDD	chr12:53908293-53908576(-)$1	283	27	30	8.9999
===	chr11:65192377-65192645(+)$1	268	146	149	8.9999
c]d	chr3:179117220-179117459(-)$1	239	155	158	8.9999
[cc	chr22:42981174-42981420(-)$1	246	123	126	8.9999
000	chr1:33789873-33790169(-)$1	296	120	123	8.9999
c!!	chr1:160183415-160183667(+)$1	252	16	19	8.9999
::g	chr17:42473535-42473830(-)$1	295	83	86	8.9999
ccc	chr16:30751653-30751961(+)$1	308	23	26	8.9999
eee	chr15:91463750-91464036(+)$1	286	51	54	8.9999
:::	chr14:100800797-100801061(-)$1	264	2	5	8.9999
nnn	chr9:117406154-117406435(+)$1	281	34	37	8.9999
::G	chr17:46940608-46940891(+)$1	283	5	8	8.9999
:::	chr2:27249343-27249633(+)$1	290	115	118	8.9999
ccc	chr17:420923-421186(-)$1	263	89	92	8.9999
:::	chrX:118377541-118377822(+)$1	281	6	9	8.9999
fff	chr8:11700843-11701113(-)$1	270	69	72	8.9999
:::	chr8:146279838-146280147(+)$1	309	0	3	8.9999
C::	chr3:186793845-186794057(+)$1	212	35	38	8.9999
eeo	chr17:48459513-48459780(-)$1	267	29	32	8.9999
ccc	chr1:28864747-28865065(+)$1	318	37	40	8.9999
nnn	chr22:22276457-22276679(-)$1	222	21	24	8.9999
!bb	chr2:11584533-11584801(-)$1	268	8	11	8.9999
eee	chr2:97260243-97260514(-)$1	271	28	31	8.9999
eee	chr16:29678403-29678652(+)$1	249	44	47	8.9999
ppp	chr3:126754411-126754734(+)$1	323	215	218	8.9999
:::	chr10:6275232-6275504(+)$1	272	27	30	8.9999
::e	chr10:71161088-71161329(+)$1	241	81	84	8.9999
]ff	chr19:1038831-1039088(+)$1	257	79	82	8.9999
ooo	chr2:232673162-232673423(+)$1	261	6	9	8.9999
::e	chr18:47918632-47918839(+)$1	207	38	41	8.9999
!dd	chr6:7882619-7882897(-)$1	278	38	41	8.9999
ggg	chr2:131809193-131809424(-)$1	231	172	175	8.9999
EEE	chr20:61920160-61920437(+)$1	277	14	17	8.9999
""c	chr16:69496916-69497131(+)$1	215	61	64	8.9999
c$$	chr19:1038711-1038933(+)$1	222	75	78	8.9999
55e	chr1:115313126-115313412(-)$1	286	83	86	8.9999
DDD	chr17:1422242-1422542(-)$1	300	40	43	8.9999
SSS	chr2:30382080-30382410(+)$1	330	81	84	8.9999
qqq	chr2:224741872-224742128(-)$1	256	63	66	8.9999
eee	chr10:75010307-75010547(-)$1	240	4	7	8.9999
FFF	chr19:49376538-49376805(+)$1	267	7	10	8.9999
DDD	chr19:4360977-4361215(-)$1	238	171	174	8.9999
:::	chr12:120649528-120649791(-)$1	263	0	3	8.9999
qqq	chr14:77254287-77254555(-)$1	268	23	26	8.9999
EEE	chr7:72397248-72397547(+)$1	299	8	11	8.9999
:::	chr22:22118189-22118462(-)$1	273	5	8	8.9999
:::	chr12:58214120-58214354(-)$1	234	25	28	8.9999
ggg	chr14:75369656-75369942(+)$1	286	67	70	8.9999
ooo	chr4:10076087-10076415(-)$1	328	28	31	8.9999
e]d	chr14:81941449-81941682(-)$1	233	75	78	8.9999
b22	chr1:156712954-156713221(-)$1	267	25	28	8.9999
ttt	chrY:21153110-21153358(-)$1	248	155	158	8.9999
ooo	chr15:89442042-89442440(-)$1	398	46	49	8.9999
pbb	chr1:151555704-151555982(+)$1	278	16	19	8.9999
sss	chr17:27206407-27206655(-)$1	248	26	29	8.9999
qqq	chr6:38122151-38122420(+)$1	269	35	38	8.9999
LLL	chr10:12163848-12164106(+)$1	258	33	36	8.9999
:::	chr2:27002602-27002860(+)$1	258	5	8	8.9999
ddd	chr19:12986515-12986752(-)$1	237	68	71	8.9999
fff	chr8:27144371-27144707(-)$1	336	41	44	8.9999
EEE	chr19:39398708-39398968(+)$1	260	131	134	8.9999
GGG	chr3:48199164-48199498(-)$1	334	53	56	8.9999
FFF	chr22:42481723-42481975(-)$1	252	42	45	8.9999
ggg	chr3:13358657-13358918(-)$1	261	4	7	8.9999
::g	chr5:150089842-150090120(-)$1	278	16	19	8.9999
hhh	chr19:47712918-47713157(+)$1	239	141	144	8.9999
fff	chr22:22051554-22051858(+)$1	304	99	102	8.9999
rrr	chr15:67493974-67494221(-)$1	247	30	33	8.9999
eee	chr7:97836732-97836982(+)$1	250	68	71	8.9999
::e	chr19:896965-897184(-)$1	219	16	19	8.9999
:::	chr19:811283-811530(+)$1	247	39	42	8.9999
JJJ	chr6:30708224-30708467(-)$1	243	54	57	8.9999
'''	chr19:11256915-11257184(-)$1	269	51	54	8.9999
d]d	chr22:20133445-20133736(+)$1	291	18	21	8.9999
!!e	chr17:40732912-40733159(-)$1	247	43	46	8.9999
sss	chr17:44833719-44834008(+)$1	289	21	24	8.9999
iii	chr21:45176248-45176486(+)$1	238	94	97	8.9999
ddd	chr16:81744992-81745206(+)$1	214	20	23	8.9999
III	chr12:54789472-54789736(-)$1	264	52	55	8.9999
fff	chr2:131905694-131905962(+)$1	268	101	104	8.9999
)))	chr8:124221984-124222209(+)$1	225	13	16	8.9999
h[c	chr3:142838651-142838933(+)$1	282	66	69	8.9999

#DB
(((	chr13:45007940-45008217(-)$1	1	2	5	8.9999
...	chr1:33475844-33476124(-)$1	1	31	34	8.9999
...	chr9:123619803-123620053(-)$1	1	13	16	8.9999
..(	chr16:23476821-23477064(-)$1	1	1	4	8.9999
(((	chr9:132897663-132897984(+)$1	1	25	28	8.9999
..(	chr7:75162674-75162927(-)$1	1	15	18	8.9999
(((	chr16:24229877-24230127(+)$1	1	22	25	8.9999
(((	chr7:98993760-98994000(-)$1	1	22	25	8.9999
((.	chr10:72521458-72521737(+)$1	1	0	3	8.9999
(((	chr17:41196297-41196558(-)$1	1	134	137	8.9999
.((	chr8:102700394-102700638(-)$1	1	4	7	8.9999
.))	chr1:33475680-33475907(-)$1	1	129	132	8.9999
(((	chr7:150067468-150067708(+)$1	1	42	45	8.9999
)))	chr2:69549819-69550090(-)$1	1	97	100	8.9999
...	chr1:28608357-28608624(+)$1	1	19	22	8.9999
...	chr11:65765648-65765902(-)$1	1	7	10	8.9999
(..	chr19:39874208-39874489(+)$1	1	27	30	8.9999
(((	chr12:53908293-53908576(-)$1	1	27	30	8.9999
(((	chr11:65192377-65192645(+)$1	1	146	149	8.9999
).)	chr3:179117220-179117459(-)$1	1	155	158	8.9999
.((	chr22:42981174-42981420(-)$1	1	123	126	8.9999
...	chr1:33789873-33790169(-)$1	1	120	123	8.9999
(..	chr1:160183415-160183667(+)$1	1	16	19	8.9999
..(	chr17:42473535-42473830(-)$1	1	83	86	8.9999
)))	chr16:30751653-30751961(+)$1	1	23	26	8.9999
)))	chr15:91463750-91464036(+)$1	1	51	54	8.9999
...	chr14:100800797-100801061(-)$1	1	2	5	8.9999
...	chr9:117406154-117406435(+)$1	1	34	37	8.9999
..(	chr17:46940608-46940891(+)$1	1	5	8	8.9999
...	chr2:27249343-27249633(+)$1	1	115	118	8.9999
)))	chr17:420923-421186(-)$1	1	89	92	8.9999
...	chrX:118377541-118377822(+)$1	1	6	9	8.9999
(((	chr8:11700843-11701113(-)$1	1	69	72	8.9999
...	chr8:146279838-146280147(+)$1	1	0	3	8.9999
(..	chr3:186793845-186794057(+)$1	1	35	38	8.9999
((.	chr17:48459513-48459780(-)$1	1	29	32	8.9999
)))	chr1:28864747-28865065(+)$1	1	37	40	8.9999
...	chr22:22276457-22276679(-)$1	1	21	24	8.9999
.((	chr2:11584533-11584801(-)$1	1	8	11	8.9999
(((	chr2:97260243-97260514(-)$1	1	28	31	8.9999
)))	chr16:29678403-29678652(+)$1	1	44	47	8.9999
...	chr3:126754411-126754734(+)$1	1	215	218	8.9999
...	chr10:6275232-6275504(+)$1	1	27	30	8.9999
..(	chr10:71161088-71161329(+)$1	1	81	84	8.9999
.))	chr19:1038831-1039088(+)$1	1	79	82	8.9999
...	chr2:232673162-232673423(+)$1	1	6	9	8.9999
..(	chr18:47918632-47918839(+)$1	1	38	41	8.9999
.((	chr6:7882619-7882897(-)$1	1	38	41	8.9999
)))	chr2:131809193-131809424(-)$1	1	172	175	8.9999
(((	chr20:61920160-61920437(+)$1	1	14	17	8.9999
..(	chr16:69496916-69497131(+)$1	1	61	64	8.9999
(..	chr19:1038711-1038933(+)$1	1	75	78	8.9999
..)	chr1:115313126-115313412(-)$1	1	83	86	8.9999
(((	chr17:1422242-1422542(-)$1	1	40	43	8.9999
...	chr2:30382080-30382410(+)$1	1	81	84	8.9999
...	chr2:224741872-224742128(-)$1	1	63	66	8.9999
(((	chr10:75010307-75010547(-)$1	1	4	7	8.9999
(((	chr19:49376538-49376805(+)$1	1	7	10	8.9999
)))	chr19:4360977-4361215(-)$1	1	171	174	8.9999
...	chr12:120649528-120649791(-)$1	1	0	3	8.9999
...	chr14:77254287-77254555(-)$1	1	23	26	8.9999
(((	chr7:72397248-72397547(+)$1	1	8	11	8.9999
...	chr22:22118189-22118462(-)$1	1	5	8	8.9999
...	chr12:58214120-58214354(-)$1	1	25	28	8.9999
)))	chr14:75369656-75369942(+)$1	1	67	70	8.9999
...	chr4:10076087-10076415(-)$1	1	28	31	8.9999
).)	chr14:81941449-81941682(-)$1	1	75	78	8.9999
)..	chr1:156712954-156713221(-)$1	1	25	28	8.9999
...	chrY:21153110-21153358(-)$1	1	155	158	8.9999
...	chr15:89442042-89442440(-)$1	1	46	49	8.9999
.))	chr1:151555704-151555982(+)$1	1	16	19	8.9999
...	chr17:27206407-27206655(-)$1	1	26	29	8.9999
...	chr6:38122151-38122420(+)$1	1	35	38	8.9999
...	chr10:12163848-12164106(+)$1	1	33	36	8.9999
...	chr2:27002602-27002860(+)$1	1	5	8	8.9999
)))	chr19:12986515-12986752(-)$1	1	68	71	8.9999
(((	chr8:27144371-27144707(-)$1	1	41	44	8.9999
)))	chr19:39398708-39398968(+)$1	1	131	134	8.9999
(((	chr3:48199164-48199498(-)$1	1	53	56	8.9999
(((	chr22:42481723-42481975(-)$1	1	42	45	8.9999
(((	chr3:13358657-13358918(-)$1	1	4	7	8.9999
..(	chr5:150089842-150090120(-)$1	1	16	19	8.9999
)))	chr19:47712918-47713157(+)$1	1	141	144	8.9999
(((	chr22:22051554-22051858(+)$1	1	99	102	8.9999
...	chr15:67493974-67494221(-)$1	1	30	33	8.9999
)))	chr7:97836732-97836982(+)$1	1	68	71	8.9999
..(	chr19:896965-897184(-)$1	1	16	19	8.9999
...	chr19:811283-811530(+)$1	1	39	42	8.9999
(((	chr6:30708224-30708467(-)$1	1	54	57	8.9999
...	chr19:11256915-11257184(-)$1	1	51	54	8.9999
).)	chr22:20133445-20133736(+)$1	1	18	21	8.9999
..(	chr17:40732912-40733159(-)$1	1	43	46	8.9999
...	chr17:44833719-44834008(+)$1	1	21	24	8.9999
)))	chr21:45176248-45176486(+)$1	1	94	97	8.9999
)))	chr16:81744992-81745206(+)$1	1	20	23	8.9999
(((	chr12:54789472-54789736(-)$1	1	52	55	8.9999
(((	chr2:131905694-131905962(+)$1	1	101	104	8.9999
...	chr8:124221984-124222209(+)$1	1	13	16	8.9999
(.(	chr3:142838651-142838933(+)$1	1	66	69	8.9999

#PSSM
U : 0.89	u : 0.10	
C : 0.89	c : 0.10	
U : 0.88	u : 0.11	

#score	890.9999999999998
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_UTR_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
::::::::BBMMMMEEEEE::::ggggggg"""bbcccooooooccc4444bb55555ggggggg::ggggggglllggggggg::::eeeee[bbccc[eeeee[bb[bbpppppppbb]bb333eeeeeccc22bbeeeee:::bbhhhhhhhhrrrrrrrrrhhhhhhhh]bb:::::::::::HHHHHHHHLLLCCC:::ffffffccc[bbcccooooooccc333bbccc]ffffff::eeeeeiiiiiiiii[bbqqqqqqqqbb]iiiiiiiii333eeeee::::CCC}HHHHHHHHEEEEEY	chr19:18054363-18054685(+)$1	322	3	315	936.0000

#DB
........((....(((((....(((((((...(((((......)))....)).....)))))))..(((((((...)))))))....(((((.(((((.(((((.((.((.......)).))...))))))))..)))))))...((((((((((.........)))))))).))...........((((((((...(((...(((((((((.(((((......)))...))))).))))))..((((((((((((((.((........)).)))))))))...)))))....))).))))))))))))).	chr19:18054363-18054685(+)$1	1	3	315	936.0000

#PSSM
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	

#score	936.0
#seq	1
#width	312
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_CDS_m2_run2.nuc.txt

#NT
GGCAGCG	chr19:1104601-1104896(+)$1	295	169	176	13.6666
UGCAGGG	chr3:72495779-72496148(-)$1	369	162	169	13.4166
GGCAGAG	chr22:19431802-19432079(-)$1	277	236	243	13.3333
CGCAGGG	chr2:55276587-55276909(-)$1	322	4	11	13.3333
CGCAGGG	chr7:150777586-150777892(-)$1	306	101	108	13.3333
GGCCGGG	chr20:61492803-61493151(-)$1	348	38	45	14.6666
UGCAGGG	chr9:74979417-74979671(-)$1	254	54	61	13.4166
ggcgggg	chrX:20284628-20284891(-)$1	263	96	103	14.5833
CGCAGGG	chr7:150777716-150777953(-)$1	237	162	169	13.3333
GGCAGGU	chr1:234744031-234744314(-)$1	283	73	80	13.0000
ggcgggg	chr1:27022957-27023194(+)$1	237	38	45	14.5833
GGCCGGG	chr11:69489740-69490059(-)$1	319	113	120	14.6666
ggcagcg	chr17:46985943-46986202(+)$1	259	15	22	13.6666
GGCAGGC	chr17:72768084-72768404(-)$1	320	81	88	13.0000
GGCAGGG	chr3:52514258-52514537(+)$1	279	214	221	17.2500
UGCAGGG	chr12:110719600-110719847(+)$1	247	117	124	13.4166
GGCGGGG	chr20:62373515-62373802(+)$1	287	72	79	14.5833
CGCAGGG	chr7:150777692-150777916(-)$1	224	125	132	13.3333
GGCAGCG	chr19:5609951-5610250(-)$1	299	152	159	13.6666
GGCAGGG	chr22:42229081-42229399(+)$1	318	162	169	17.2500
UGCAGGG	chr9:128003082-128003297(-)$1	215	31	38	13.4166
GGCAGGG	chr7:1474185-1474491(-)$1	306	107	114	17.2500
ggcaggg	chr6:79787084-79787371(-)$1	287	32	39	17.2500
GGCCGGG	chr19:1271406-1271667(+)$1	261	8	15	14.6666
GGCAGGG	chr17:73823576-73823859(-)$1	283	115	122	17.2500
GGCAGGG	chr8:52811346-52811688(-)$1	342	325	332	17.2500
GGCUGGG	chr14:102515875-102516152(+)$1	277	89	96	14.1666
GGCAGCG	chr19:1978314-1978537(+)$1	223	83	90	13.6666
GGCAGGG	chr11:65631123-65631376(+)$1	253	99	106	17.2500
GGCAGGC	chr11:64889014-64889274(-)$1	260	211	218	13.0000
GGCCGGG	chr11:653891-654223(-)$1	332	190	197	14.6666
GGCCGGG	chr5:179248034-179248279(+)$1	245	114	121	14.6666
GGCAGCG	chr19:2270402-2270678(+)$1	276	142	149	13.6666
GGCAGGG	chr11:65632357-65632619(+)$1	262	66	73	17.2500
UGCAGGG	chr3:186502108-186502318(+)$1	210	6	13	13.4166
GGCAGCG	chr19:2270509-2270778(+)$1	269	35	42	13.6666
GGCCGGG	chr12:132588888-132589160(+)$1	272	68	75	14.6666
GGCCGGG	chr9:114937144-114937516(-)$1	372	4	11	14.6666
GGCAGGG	chr11:637269-637557(+)$1	288	129	136	17.2500
GGCAGGG	chr20:42086836-42087114(+)$1	278	39	46	17.2500
GGCCGGG	chr1:207494929-207495405(+)$1	476	298	305	14.6666
GGCGGGG	chr7:150783825-150784078(+)$1	253	18	25	14.5833
GGCAGGG	chr4:53279-53548(+)$1	269	118	125	17.2500
GGCAGGG	chr19:15512310-15512561(-)$1	251	42	49	17.2500
GGCAGGG	chr6:34857033-34857319(+)$1	286	20	27	17.2500
GGCGGGG	chr3:9851542-9851799(+)$1	257	27	34	14.5833
GGCAGGU	chr1:11856350-11856608(-)$1	258	147	154	13.0000
ggcaggc	chr19:10407082-10407361(+)$1	279	116	123	13.0000
GGCGGGG	chr7:77166712-77166972(+)$1	260	32	39	14.5833
ggccggg	chr8:145687759-145688000(-)$1	241	25	32	14.6666
ggcaggg	chr16:87426027-87426323(+)$1	296	105	112	17.2500
ggcaggg	chr12:56740569-56740892(-)$1	323	26	33	17.2500
GGCGGGG	chr17:30264232-30264486(+)$1	254	7	14	14.5833
GGCUGGG	chr11:64010753-64011033(+)$1	280	7	14	14.1666
GGCAGCG	chr1:27023211-27023444(+)$1	233	225	232	13.6666
GGCGGGG	chr5:176981011-176981292(-)$1	281	111	118	14.5833
GGCAGGU	chr17:80050578-80050848(-)$1	270	108	115	13.0000
ggcagag	chr19:18420180-18420465(-)$1	285	130	137	13.3333
GGCAGAG	chr9:37429559-37429840(+)$1	281	263	270	13.3333

#otherMatches

#Struct PSSM
KBB{DDD	chr11:419618-419892(-)$1	274	7	14	14.1666
nnnnhhh	chr19:1104601-1104896(+)$1	295	169	176	13.6666
GG}BB}C	chr3:72495779-72496148(-)$1	369	162	169	13.4166
3bb4444	chr22:19431802-19432079(-)$1	277	236	243	13.3333
E{AKKGG	chr2:55276587-55276909(-)$1	322	4	11	13.3333
:::::JJ	chr7:150777586-150777892(-)$1	306	101	108	13.3333
:DDDDCC	chr20:61492803-61493151(-)$1	348	38	45	14.6666
eewwwww	chr9:74979417-74979671(-)$1	254	54	61	13.4166
eeeee]a	chrX:20284628-20284891(-)$1	263	96	103	14.5833
bb22===	chr7:150777716-150777953(-)$1	237	162	169	13.3333
ddd"""g	chr1:234744031-234744314(-)$1	283	73	80	13.0000
%dddd[b	chr1:27022957-27023194(+)$1	237	38	45	14.5833
CKKJJJJ	chr11:69489740-69490059(-)$1	319	113	120	14.6666
ggggggf	chr17:46985943-46986202(+)$1	259	15	22	13.6666
DDDYYEE	chr17:72768084-72768404(-)$1	320	81	88	13.0000
eeeeecc	chr3:52514258-52514537(+)$1	279	214	221	17.2500
ddd!!bb	chr12:110719600-110719847(+)$1	247	117	124	13.4166
mmmma]d	chr20:62373515-62373802(+)$1	287	72	79	14.5833
bb22===	chr7:150777692-150777916(-)$1	224	125	132	13.3333
3eeeeef	chr19:5609951-5610250(-)$1	299	152	159	13.6666
ccc]a]f	chr22:42229081-42229399(+)$1	318	162	169	17.2500
FF:DDDD	chr9:128003082-128003297(-)$1	215	31	38	13.4166
ccc[ggg	chr7:1474185-1474491(-)$1	306	107	114	17.2500
fffff]a	chr6:79787084-79787371(-)$1	287	32	39	17.2500
EEEEKKJ	chr19:1271406-1271667(+)$1	261	8	15	14.6666
=======	chr17:73823576-73823859(-)$1	283	115	122	17.2500
2bb::::	chr8:52811346-52811688(-)$1	342	325	332	17.2500
dd]bbdd	chr14:102515875-102516152(+)$1	277	89	96	14.1666
heeeee#	chr19:1978314-1978537(+)$1	223	83	90	13.6666
ppppppp	chr11:65631123-65631376(+)$1	253	99	106	17.2500
dd22ddd	chr11:64889014-64889274(-)$1	260	211	218	13.0000
eeeeedd	chr11:653891-654223(-)$1	332	190	197	14.6666
d:JJJJJ	chr5:179248034-179248279(+)$1	245	114	121	14.6666
fff]bb]	chr19:2270402-2270678(+)$1	276	142	149	13.6666
ddd[fff	chr11:65632357-65632619(+)$1	262	66	73	17.2500
:ccc[ar	chr3:186502108-186502318(+)$1	210	6	13	13.4166
cc22eee	chr19:2270509-2270778(+)$1	269	35	42	13.6666
====fff	chr12:132588888-132589160(+)$1	272	68	75	14.6666
eeeelll	chr9:114937144-114937516(-)$1	372	4	11	14.6666
[bblllb	chr11:637269-637557(+)$1	288	129	136	17.2500
[a####c	chr20:42086836-42087114(+)$1	278	39	46	17.2500
JJJJJJJ	chr1:207494929-207495405(+)$1	476	298	305	14.6666
:eeeeeq	chr7:150783825-150784078(+)$1	253	18	25	14.5833
e333ddd	chr4:53279-53548(+)$1	269	118	125	17.2500
[bbpppp	chr19:15512310-15512561(-)$1	251	42	49	17.2500
qqa]a]c	chr6:34857033-34857319(+)$1	286	20	27	17.2500
pbb22a]	chr3:9851542-9851799(+)$1	257	27	34	14.5833
fffff::	chr1:11856350-11856608(-)$1	258	147	154	13.0000
22a22ee	chr19:10407082-10407361(+)$1	279	116	123	13.0000
H{AFFFF	chr7:77166712-77166972(+)$1	260	32	39	14.5833
ffffqqq	chr8:145687759-145688000(-)$1	241	25	32	14.6666
eee]fff	chr16:87426027-87426323(+)$1	296	105	112	17.2500
::dddd!	chr12:56740569-56740892(-)$1	323	26	33	17.2500
{BBJJJJ	chr17:30264232-30264486(+)$1	254	7	14	14.5833
DDDDLLL	chr11:64010753-64011033(+)$1	280	7	14	14.1666
CCC}BB:	chr1:27023211-27023444(+)$1	233	225	232	13.6666
BB:DDDD	chr5:176981011-176981292(-)$1	281	111	118	14.5833
hh[dddd	chr17:80050578-80050848(-)$1	270	108	115	13.0000
ee]bb]b	chr19:18420180-18420465(-)$1	285	130	137	13.3333
CC}GGGG	chr9:37429559-37429840(+)$1	281	263	270	13.3333

#DB
.((.(((	chr11:419618-419892(-)$1	1	7	14	14.1666
....)))	chr19:1104601-1104896(+)$1	1	169	176	13.6666
)).)).)	chr3:72495779-72496148(-)$1	1	162	169	13.4166
.))....	chr22:19431802-19432079(-)$1	1	236	243	13.3333
(.(..((	chr2:55276587-55276909(-)$1	1	4	11	13.3333
.....((	chr7:150777586-150777892(-)$1	1	101	108	13.3333
.))))((	chr20:61492803-61493151(-)$1	1	38	45	14.6666
((.....	chr9:74979417-74979671(-)$1	1	54	61	13.4166
))))).)	chrX:20284628-20284891(-)$1	1	96	103	14.5833
))..)))	chr7:150777716-150777953(-)$1	1	162	169	13.3333
(((...(	chr1:234744031-234744314(-)$1	1	73	80	13.0000
.((((.(	chr1:27022957-27023194(+)$1	1	38	45	14.5833
(..((((	chr11:69489740-69490059(-)$1	1	113	120	14.6666
))))))(	chr17:46985943-46986202(+)$1	1	15	22	13.6666
)))..))	chr17:72768084-72768404(-)$1	1	81	88	13.0000
(((((((	chr3:52514258-52514537(+)$1	1	214	221	17.2500
(((..((	chr12:110719600-110719847(+)$1	1	117	124	13.4166
....).)	chr20:62373515-62373802(+)$1	1	72	79	14.5833
))..)))	chr7:150777692-150777916(-)$1	1	125	132	13.3333
.)))))(	chr19:5609951-5610250(-)$1	1	152	159	13.6666
))).).)	chr22:42229081-42229399(+)$1	1	162	169	17.2500
((.((((	chr9:128003082-128003297(-)$1	1	31	38	13.4166
(((.(((	chr7:1474185-1474491(-)$1	1	107	114	17.2500
))))).)	chr6:79787084-79787371(-)$1	1	32	39	17.2500
((((..(	chr19:1271406-1271667(+)$1	1	8	15	14.6666
)))))))	chr17:73823576-73823859(-)$1	1	115	122	17.2500
.))....	chr8:52811346-52811688(-)$1	1	325	332	17.2500
)).))((	chr14:102515875-102516152(+)$1	1	89	96	14.1666
((((((.	chr19:1978314-1978537(+)$1	1	83	90	13.6666
.......	chr11:65631123-65631376(+)$1	1	99	106	17.2500
))..)))	chr11:64889014-64889274(-)$1	1	211	218	13.0000
)))))))	chr11:653891-654223(-)$1	1	190	197	14.6666
).(((((	chr5:179248034-179248279(+)$1	1	114	121	14.6666
))).)).	chr19:2270402-2270678(+)$1	1	142	149	13.6666
(((.(((	chr11:65632357-65632619(+)$1	1	66	73	17.2500
.(((.(.	chr3:186502108-186502318(+)$1	1	6	13	13.4166
))..)))	chr19:2270509-2270778(+)$1	1	35	42	13.6666
(((((((	chr12:132588888-132589160(+)$1	1	68	75	14.6666
((((...	chr9:114937144-114937516(-)$1	1	4	11	14.6666
.((...)	chr11:637269-637557(+)$1	1	129	136	17.2500
.(....(	chr20:42086836-42087114(+)$1	1	39	46	17.2500
)))))))	chr1:207494929-207495405(+)$1	1	298	305	14.6666
.(((((.	chr7:150783825-150784078(+)$1	1	18	25	14.5833
)...)))	chr4:53279-53548(+)$1	1	118	125	17.2500
.((....	chr19:15512310-15512561(-)$1	1	42	49	17.2500
..).).)	chr6:34857033-34857319(+)$1	1	20	27	17.2500
.))..).	chr3:9851542-9851799(+)$1	1	27	34	14.5833
)))))..	chr1:11856350-11856608(-)$1	1	147	154	13.0000
..)..))	chr19:10407082-10407361(+)$1	1	116	123	13.0000
(.(((((	chr7:77166712-77166972(+)$1	1	32	39	14.5833
((((...	chr8:145687759-145688000(-)$1	1	25	32	14.6666
))).)))	chr16:87426027-87426323(+)$1	1	105	112	17.2500
..((((.	chr12:56740569-56740892(-)$1	1	26	33	17.2500
.((((((	chr17:30264232-30264486(+)$1	1	7	14	14.5833
((((...	chr11:64010753-64011033(+)$1	1	7	14	14.1666
))).)).	chr1:27023211-27023444(+)$1	1	225	232	13.6666
((.((((	chr5:176981011-176981292(-)$1	1	111	118	14.5833
((.((((	chr17:80050578-80050848(-)$1	1	108	115	13.0000
)).)).)	chr19:18420180-18420465(-)$1	1	130	137	13.3333
)).))))	chr9:37429559-37429840(+)$1	1	263	270	13.3333

#PSSM
G : 0.70	g : 0.15	U : 0.08	C : 0.06	
G : 0.85	g : 0.15	
C : 0.85	c : 0.15	
A : 0.56	C : 0.13	a : 0.09	G : 0.09	U : 0.05	g : 0.03	c : 0.01	
G : 0.85	g : 0.15	
G : 0.71	g : 0.11	C : 0.09	A : 0.03	c : 0.01	a : 0.01	
G : 0.76	g : 0.13	U : 0.05	C : 0.03	c : 0.01	

#score	884.0000000000003
#seq	60
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_transcript_m1_run1.nuc.txt

#NT
AUUUUUUUAUA	chr1:26143153-26143406(+)$1	253	98	109	16.9166
AUUUCUUUUUA	chr1:6931830-6932138(+)$1	308	12	23	16.9166
AUUUUUCCUUU	chr6:18226304-18226571(-)$1	267	74	85	17.6666
AGUUUUUUUUC	chr12:54632258-54632484(-)$1	226	88	99	16.8333
AUUUUAAUUUU	chr10:75878669-75878940(+)$1	271	218	229	17.4166
AUUACUUUUUU	chr9:123952861-123953109(-)$1	248	76	87	17.0000
CUUUUUGUUUU	chr2:61705286-61705547(-)$1	261	204	215	18.5000
AAUUUUUGUUU	chr5:32406944-32407229(-)$1	285	76	87	17.2500
AGUUUUGUUUU	chr6:108533086-108533343(-)$1	257	120	131	17.6666
AUUUUUUUCUU	chr11:73388627-73388842(-)$1	215	169	180	21.1666
AAUUUUCUUUU	chr10:120927483-120927724(-)$1	241	145	156	17.5833
CUUUUUUUUUU	chr8:99054771-99054986(-)$1	215	137	148	22.0000
uuuuuuuuuAU	chr3:150177379-150177672(+)$1	293	0	11	16.8333
AUAUUUUUUUC	chr7:135613755-135613992(-)$1	237	51	62	16.7500
AUUUUUUUUUU	chrX:77381544-77381792(+)$1	248	225	236	25.1666
AUGUUUUUCUU	chr2:61719706-61719977(-)$1	271	78	89	17.1666
AUGGUUUUUUU	chr4:174252955-174253175(-)$1	220	189	200	16.9166
AUUAUUCUUUU	chr2:74383233-74383492(-)$1	259	89	100	17.5833
AUUUUUAAUUU	chr7:107560076-107560316(+)$1	240	29	40	18.0000
auuuuuuuuuu	chr16:11642880-11643137(-)$1	257	216	227	25.1666
AUUUUUUUUUU	chr16:47549331-47549610(+)$1	279	232	243	25.1666
CUUUUUUUUUU	chr2:174773612-174773922(-)$1	310	271	282	22.0000
GUUUUUUUUUU	chr15:69071487-69071756(-)$1	269	231	242	21.2500
CUUUUUUUUUU	chr1:84964027-84964262(-)$1	235	6	17	22.0000
AUAUUUUUUGU	chr14:102552453-102552677(-)$1	224	199	210	16.6666
AUUUUUUUUUA	chr15:59942782-59943052(-)$1	270	239	250	21.0000
AUUGUUUUUUU	chr14:102231516-102231751(+)$1	235	187	198	20.9166
CUUUUUCUUUU	chr3:47627504-47627741(-)$1	237	138	149	18.5000
AUUUGUUUUAU	chr8:41367666-41367969(+)$1	303	29	40	16.9166
AUUUUUUUUCU	chr1:19510410-19510683(-)$1	273	202	213	20.6666
ACUUUUUUUUU	chr1:223962489-223962876(+)$1	387	22	33	20.9166
AUUUUUGUUUU	chr1:202696540-202696795(-)$1	255	101	112	21.6666
AUUUUCUGUUU	chr1:95658482-95658761(+)$1	279	94	105	17.1666
AUUUGUUUCUU	chr12:109039227-109039478(-)$1	251	191	202	17.3333
CUUUUUAUUUU	chr10:75881685-75881922(-)$1	237	86	97	18.6666
CUUUUUUCUUU	chr8:101721260-101721468(-)$1	208	114	125	18.0000
AUUUAUUUUUU	chr12:111890238-111890520(-)$1	282	180	191	21.0833
AUAUUUUUAUU	chr15:59942863-59943073(-)$1	210	34	45	17.0000
AUGUUUUUGUU	chr2:101622753-101622979(+)$1	226	131	142	17.2500
AUUUUUUAUUA	chr8:54960209-54960461(-)$1	252	131	142	17.1666
AGUUUCUUUUU	chr3:169712302-169712607(+)$1	305	75	86	17.0000
AUCUUUUUUUU	chr17:1326533-1326859(-)$1	326	88	99	20.9166
AUUAUCUUUUU	chr3:47629093-47629343(-)$1	250	34	45	16.9166
AUUUUGUUGUU	chr6:7289478-7289710(-)$1	232	77	88	16.8333
AUUUUUUUGUU	chr9:37357975-37358221(+)$1	246	44	55	21.2500
AUUUUUAUUUU	chr5:61684276-61684548(-)$1	272	197	208	21.8333
AGUUUUUUUGU	chr12:98941459-98941730(+)$1	271	83	94	16.7500
AUGUUUUUGUU	chr6:38644530-38644751(-)$1	221	28	39	17.2500
AUUUGUUAUUU	chr14:55529887-55530141(+)$1	254	167	178	17.5000
AUUUUUAAUUU	chr8:141541811-141542106(-)$1	295	277	288	18.0000
AUUUUUAGUUU	chr22:21288308-21288598(+)$1	290	273	284	18.0000
AAUUUUUUUUU	chr2:136432800-136433011(+)$1	211	33	44	21.0833
AUUUAUUGUUU	chr15:45900112-45900387(+)$1	275	23	34	17.2500
CUUAUUUUUUU	chr6:160526844-160527138(+)$1	294	220	231	17.9166
AUUUUCUUUUU	chr8:126021347-126021583(+)$1	236	44	55	21.0000
AUUUGUGUUUU	chr1:67878332-67878584(-)$1	252	50	61	17.8333
AUUUUUUUUUU	chr6:64290540-64290828(+)$1	288	92	103	25.1666
AUUCUUUUUUu	chr11:61133415-61133778(+)$1	363	291	302	20.8333
CUUUUUUUUUU	chr1:84964077-84964331(-)$1	254	75	86	22.0000

#otherMatches

#Struct PSSM
2==========	chr10:71978424-71978674(-)$1	250	87	98	18.1666
ooooogggggg	chr1:26143153-26143406(+)$1	253	98	109	16.9166
dd:::::::::	chr1:6931830-6932138(+)$1	308	12	23	16.9166
ffffff[eeee	chr6:18226304-18226571(-)$1	267	74	85	17.6666
:CCCYYGGGGG	chr12:54632258-54632484(-)$1	226	88	99	16.8333
f))))))))))	chr10:75878669-75878940(+)$1	271	218	229	17.4166
:::::::::::	chr9:123952861-123953109(-)$1	248	76	87	17.0000
bb22dddd]cc	chr2:61705286-61705547(-)$1	261	204	215	18.5000
ppppppdddd7	chr5:32406944-32407229(-)$1	285	76	87	17.2500
gggggg99999	chr6:108533086-108533343(-)$1	257	120	131	17.6666
ggguuuuuuuu	chr11:73388627-73388842(-)$1	215	169	180	21.1666
bmmmmbb]eee	chr10:120927483-120927724(-)$1	241	145	156	17.5833
qqqqqqqdddd	chr8:99054771-99054986(-)$1	215	137	148	22.0000
JJJJJJJJJJJ	chr3:150177379-150177672(+)$1	293	0	11	16.8333
^^^^^^^hhhh	chr7:135613755-135613992(-)$1	237	51	62	16.7500
EE@@@@@@@@@	chrX:77381544-77381792(+)$1	248	225	236	25.1666
EEE::iiiiii	chr2:61719706-61719977(-)$1	271	78	89	17.1666
==bb666666c	chr4:174252955-174253175(-)$1	220	189	200	16.9166
QQQFFFFFFMM	chr2:74383233-74383492(-)$1	259	89	100	17.5833
hmmmmhhhhhh	chr7:107560076-107560316(+)$1	240	29	40	18.0000
dqqqqqqqqdd	chr16:11642880-11643137(-)$1	257	216	227	25.1666
zzzzzzzzzzz	chr16:47549331-47549610(+)$1	279	232	243	25.1666
:::::::::::	chr2:174773612-174773922(-)$1	310	271	282	22.0000
========22d	chr15:69071487-69071756(-)$1	269	231	242	21.2500
:::::::::::	chr1:84964027-84964262(-)$1	235	6	17	22.0000
fffnnnnnfff	chr14:102552453-102552677(-)$1	224	199	210	16.6666
sssssdddd]a	chr15:59942782-59943052(-)$1	270	239	250	21.0000
rrrdddd4444	chr14:102231516-102231751(+)$1	235	187	198	20.9166
000000000dd	chr3:47627504-47627741(-)$1	237	138	149	18.5000
eesssssssss	chr8:41367666-41367969(+)$1	303	29	40	16.9166
DDYYBB}DDDD	chr1:19510410-19510683(-)$1	273	202	213	20.6666
ddHHHHHHHHK	chr1:223962489-223962876(+)$1	387	22	33	20.9166
55555gggggg	chr1:202696540-202696795(-)$1	255	101	112	21.6666
:::::::::ee	chr1:95658482-95658761(+)$1	279	94	105	17.1666
22ccciiiiii	chr12:109039227-109039478(-)$1	251	191	202	17.3333
b[bbqqqqqqq	chr10:75881685-75881922(-)$1	237	86	97	18.6666
EEE////////	chr8:101721260-101721468(-)$1	208	114	125	18.0000
fffqqqqqqqq	chr12:111890238-111890520(-)$1	282	180	191	21.0833
ooccc]ggggg	chr15:59942863-59943073(-)$1	210	34	45	17.0000
66=========	chr2:101622753-101622979(+)$1	226	131	142	17.2500
ccc333eeeee	chr8:54960209-54960461(-)$1	252	131	142	17.1666
ddd$$$$$ddd	chr3:169712302-169712607(+)$1	305	75	86	17.0000
bssssssssss	chr17:1326533-1326859(-)$1	326	88	99	20.9166
hhhhhhhdddd	chr3:47629093-47629343(-)$1	250	34	45	16.9166
e####bb%%%%	chr6:7289478-7289710(-)$1	232	77	88	16.8333
^^^^^^^eeee	chr9:37357975-37358221(+)$1	246	44	55	21.2500
++++++++++c	chr5:61684276-61684548(-)$1	272	197	208	21.8333
:::EEEEE{HH	chr12:98941459-98941730(+)$1	271	83	94	16.7500
:::========	chr6:38644530-38644751(-)$1	221	28	39	17.2500
'''dddd&&&&	chr14:55529887-55530141(+)$1	254	167	178	17.5000
llffffff:::	chr8:141541811-141542106(-)$1	295	277	288	18.0000
GGGGGGGEEEE	chr22:21288308-21288598(+)$1	290	273	284	18.0000
eeeee[dddd"	chr2:136432800-136433011(+)$1	211	33	44	21.0833
$$$ffffff!!	chr15:45900112-45900387(+)$1	275	23	34	17.2500
ggggg::::::	chr6:160526844-160527138(+)$1	294	220	231	17.9166
b]hhhhhhhh:	chr8:126021347-126021583(+)$1	236	44	55	21.0000
####bb[cccp	chr1:67878332-67878584(-)$1	252	50	61	17.8333
ggggggggggg	chr6:64290540-64290828(+)$1	288	92	103	25.1666
::eeeee[eee	chr11:61133415-61133778(+)$1	363	291	302	20.8333
5dddd22hhhh	chr1:84964077-84964331(-)$1	254	75	86	22.0000

#DB
.))))))))))	chr10:71978424-71978674(-)$1	1	87	98	18.1666
.....))))))	chr1:26143153-26143406(+)$1	1	98	109	16.9166
)).........	chr1:6931830-6932138(+)$1	1	12	23	16.9166
((((((.((((	chr6:18226304-18226571(-)$1	1	74	85	17.6666
.)))..)))))	chr12:54632258-54632484(-)$1	1	88	99	16.8333
(..........	chr10:75878669-75878940(+)$1	1	218	229	17.4166
...........	chr9:123952861-123953109(-)$1	1	76	87	17.0000
))..)))).))	chr2:61705286-61705547(-)$1	1	204	215	18.5000
......)))).	chr5:32406944-32407229(-)$1	1	76	87	17.2500
)))))).....	chr6:108533086-108533343(-)$1	1	120	131	17.6666
(((........	chr11:73388627-73388842(-)$1	1	169	180	21.1666
(....)).)))	chr10:120927483-120927724(-)$1	1	145	156	17.5833
.......))))	chr8:99054771-99054986(-)$1	1	137	148	22.0000
(((((((((((	chr3:150177379-150177672(+)$1	1	0	11	16.8333
.......))))	chr7:135613755-135613992(-)$1	1	51	62	16.7500
)).........	chrX:77381544-77381792(+)$1	1	225	236	25.1666
(((..((((((	chr2:61719706-61719977(-)$1	1	78	89	17.1666
))))......)	chr4:174252955-174253175(-)$1	1	189	200	16.9166
...((((((..	chr2:74383233-74383492(-)$1	1	89	100	17.5833
(....))))))	chr7:107560076-107560316(+)$1	1	29	40	18.0000
(........))	chr16:11642880-11643137(-)$1	1	216	227	25.1666
...........	chr16:47549331-47549610(+)$1	1	232	243	25.1666
...........	chr2:174773612-174773922(-)$1	1	271	282	22.0000
))))))))..)	chr15:69071487-69071756(-)$1	1	231	242	21.2500
...........	chr1:84964027-84964262(-)$1	1	6	17	22.0000
(((.....)))	chr14:102552453-102552677(-)$1	1	199	210	16.6666
.....)))).)	chr15:59942782-59943052(-)$1	1	239	250	21.0000
...))))....	chr14:102231516-102231751(+)$1	1	187	198	20.9166
.........))	chr3:47627504-47627741(-)$1	1	138	149	18.5000
((.........	chr8:41367666-41367969(+)$1	1	29	40	16.9166
))..)).))))	chr1:19510410-19510683(-)$1	1	202	213	20.6666
))((((((((.	chr1:223962489-223962876(+)$1	1	22	33	20.9166
.....))))))	chr1:202696540-202696795(-)$1	1	101	112	21.6666
.........((	chr1:95658482-95658761(+)$1	1	94	105	17.1666
..)))))))))	chr12:109039227-109039478(-)$1	1	191	202	17.3333
(.((.......	chr10:75881685-75881922(-)$1	1	86	97	18.6666
)))........	chr8:101721260-101721468(-)$1	1	114	125	18.0000
(((........	chr12:111890238-111890520(-)$1	1	180	191	21.0833
..))).)))))	chr15:59942863-59943073(-)$1	1	34	45	17.0000
..)))))))))	chr2:101622753-101622979(+)$1	1	131	142	17.2500
)))...)))))	chr8:54960209-54960461(-)$1	1	131	142	17.1666
(((.....(((	chr3:169712302-169712607(+)$1	1	75	86	17.0000
(..........	chr17:1326533-1326859(-)$1	1	88	99	20.9166
)))))))((((	chr3:47629093-47629343(-)$1	1	34	45	16.9166
(....((....	chr6:7289478-7289710(-)$1	1	77	88	16.8333
.......))))	chr9:37357975-37358221(+)$1	1	44	55	21.2500
..........(	chr5:61684276-61684548(-)$1	1	197	208	21.8333
...(((((.((	chr12:98941459-98941730(+)$1	1	83	94	16.7500
...((((((((	chr6:38644530-38644751(-)$1	1	28	39	17.2500
...((((....	chr14:55529887-55530141(+)$1	1	167	178	17.5000
..))))))...	chr8:141541811-141542106(-)$1	1	277	288	18.0000
)))))))))))	chr22:21288308-21288598(+)$1	1	273	284	18.0000
(((((.((((.	chr2:136432800-136433011(+)$1	1	33	44	21.0833
...((((((..	chr15:45900112-45900387(+)$1	1	23	34	17.2500
)))))......	chr6:160526844-160527138(+)$1	1	220	231	17.9166
).)))))))).	chr8:126021347-126021583(+)$1	1	44	55	21.0000
....((.(((.	chr1:67878332-67878584(-)$1	1	50	61	17.8333
(((((((((((	chr6:64290540-64290828(+)$1	1	92	103	25.1666
..(((((.(((	chr11:61133415-61133778(+)$1	1	291	302	20.8333
.))))..))))	chr1:84964077-84964331(-)$1	1	75	86	22.0000

#PSSM
A : 0.78	C : 0.16	u : 0.01	a : 0.01	G : 0.01	
U : 0.83	G : 0.06	A : 0.05	u : 0.03	C : 0.01	
U : 0.83	G : 0.06	A : 0.05	u : 0.03	C : 0.01	
U : 0.85	A : 0.06	u : 0.03	G : 0.03	C : 0.01	
U : 0.81	G : 0.08	C : 0.03	u : 0.03	A : 0.03	
U : 0.86	C : 0.06	u : 0.03	A : 0.01	G : 0.01	
U : 0.73	A : 0.09	C : 0.06	G : 0.06	u : 0.03	
U : 0.80	G : 0.06	A : 0.06	C : 0.03	u : 0.03	
U : 0.81	G : 0.06	C : 0.05	A : 0.03	u : 0.03	
U : 0.90	A : 0.03	G : 0.03	u : 0.01	C : 0.01	
U : 0.86	A : 0.06	C : 0.03	u : 0.03	

#score	1145.333333333335
#seq	60
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_UTR_m1_run1.nuc.txt

#NT
gccug	chr17:80477543-80477827(+)$1	284	156	161	14.9999
GCCUG	chr1:36806923-36807171(-)$1	248	129	134	14.9999
GCCUG	chr12:124968041-124968285(-)$1	244	71	76	14.9999
GCCUG	chrX:153579250-153579475(-)$1	225	109	114	14.9999
GCCUG	chr19:52709121-52709410(+)$1	289	0	5	14.9999
GCCUG	chr15:58247213-58247497(-)$1	284	130	135	14.9999
GCCUG	chr19:1985835-1986105(-)$1	270	29	34	14.9999
GCCUG	chrX:153590685-153590895(-)$1	210	187	192	14.9999
GCCUG	chr19:991937-992188(+)$1	251	83	88	14.9999
GCCUG	chr7:150069436-150069672(+)$1	236	187	192	14.9999
GCCUG	chr22:37425419-37425684(+)$1	265	1	6	14.9999
GCCUG	chr8:124219759-124220087(+)$1	328	107	112	14.9999
GCCUG	chr19:39220323-39220551(+)$1	228	162	167	14.9999
GCCUG	chr17:79890276-79890547(-)$1	271	161	166	14.9999
GCCUG	chr11:118965158-118965397(-)$1	239	46	51	14.9999
GCCUG	chr1:22175330-22175556(-)$1	226	3	8	14.9999
GCCUG	chr17:41167486-41167754(-)$1	268	140	145	14.9999
GCCUG	chr16:70415408-70415670(-)$1	262	227	232	14.9999
GCCUG	chr7:75615657-75615918(+)$1	261	144	149	14.9999
GCCUG	chr16:70433285-70433534(-)$1	249	44	49	14.9999
GCCUG	chr19:3053319-3053573(-)$1	254	16	21	14.9999
GCCUG	chr8:11688926-11689165(+)$1	239	124	129	14.9999
GCCUG	chr1:1684190-1684446(-)$1	256	33	38	14.9999
GCCUG	chr17:26883764-26884058(-)$1	294	117	122	14.9999
GCCUG	chr19:50361751-50362006(+)$1	255	85	90	14.9999
GCCUG	chr17:37076672-37076888(+)$1	216	177	182	14.9999
GCCUG	chr9:35697624-35697839(-)$1	215	162	167	14.9999
GCCUG	chr8:146016592-146016805(-)$1	213	1	6	14.9999
GCCUG	chr19:49995037-49995262(+)$1	225	67	72	14.9999
GCCUG	chr1:54871779-54872065(-)$1	286	218	223	14.9999
GCCUG	chr6:34212554-34212778(+)$1	224	119	124	14.9999
GCCUG	chr19:56599060-56599311(-)$1	251	139	144	14.9999
GCCUG	chr6:34204898-34205137(+)$1	239	19	24	14.9999
GCCUG	chr16:70415087-70415369(-)$1	282	256	261	14.9999
GCCUG	chrX:153581039-153581263(-)$1	224	119	124	14.9999
GCCUG	chr20:32883141-32883438(-)$1	297	56	61	14.9999
GCCUG	chr15:91455761-91455995(+)$1	234	208	213	14.9999
GCCUG	chrX:153582961-153583175(-)$1	214	31	36	14.9999
GCCUG	chr19:41271064-41271352(+)$1	288	24	29	14.9999
GCCUG	chr3:53262048-53262265(-)$1	217	10	15	14.9999
GCCUG	chr6:30695554-30695820(-)$1	266	214	219	14.9999
GCCUG	chr1:228286480-228286715(+)$1	235	176	181	14.9999
GCCUG	chr6:32947631-32947912(+)$1	281	83	88	14.9999
GCCUG	chrX:153590834-153591046(-)$1	212	23	28	14.9999
GCCUG	chr12:49521965-49522212(-)$1	247	62	67	14.9999
GCCUG	chr16:88709657-88709902(-)$1	245	220	225	14.9999
GCCUG	chr17:27206468-27206717(-)$1	249	58	63	14.9999
GCCUG	chrX:153578048-153578303(-)$1	255	46	51	14.9999
GCCUG	chr17:79674183-79674440(+)$1	257	205	210	14.9999
GCCUG	chr16:89627538-89627742(+)$1	204	46	51	14.9999
GCCUG	chr12:120636433-120636641(-)$1	208	2	7	14.9999
GCCUG	chr22:20302133-20302424(-)$1	291	2	7	14.9999
GCCUG	chr22:42301436-42301665(+)$1	229	18	23	14.9999
GCCUG	chr12:6643629-6643835(+)$1	206	0	5	14.9999
GCCUG	chr19:36640774-36641115(+)$1	341	69	74	14.9999
GCCUG	chr3:49137361-49137600(-)$1	239	53	58	14.9999
GCCUG	chr21:45733747-45734005(+)$1	258	171	176	14.9999
GCCUG	chr19:18649008-18649270(-)$1	262	4	9	14.9999
GCCUG	chr1:116926545-116926793(+)$1	248	110	115	14.9999
GCCUG	chr17:74386411-74386678(-)$1	267	226	231	14.9999
GCCUG	chrX:153590567-153590787(-)$1	220	79	84	14.9999
GCCUG	chr19:46324587-46324844(-)$1	257	90	95	14.9999
GCCUG	chrX:153277935-153278177(-)$1	242	165	170	14.9999
GCCUG	chr1:11849560-11849803(-)$1	243	50	55	14.9999
GCCUG	chr22:21976802-21977053(+)$1	251	223	228	14.9999

#otherMatches

#Struct PSSM
dddbb	chr15:91456443-91456707(+)$1	264	204	209	14.9999
eee:d	chr17:80477543-80477827(+)$1	284	156	161	14.9999
cmmmm	chr1:36806923-36807171(-)$1	248	129	134	14.9999
2aeee	chr12:124968041-124968285(-)$1	244	71	76	14.9999
bb22c	chrX:153579250-153579475(-)$1	225	109	114	14.9999
ggggg	chr19:52709121-52709410(+)$1	289	0	5	14.9999
ggggg	chr15:58247213-58247497(-)$1	284	130	135	14.9999
cccnn	chr19:1985835-1986105(-)$1	270	29	34	14.9999
wwwwa	chrX:153590685-153590895(-)$1	210	187	192	14.9999
eeeee	chr19:991937-992188(+)$1	251	83	88	14.9999
cc]cc	chr7:150069436-150069672(+)$1	236	187	192	14.9999
bb[ff	chr22:37425419-37425684(+)$1	265	1	6	14.9999
iiiii	chr8:124219759-124220087(+)$1	328	107	112	14.9999
ngggg	chr19:39220323-39220551(+)$1	228	162	167	14.9999
]cccf	chr17:79890276-79890547(-)$1	271	161	166	14.9999
dddd[	chr11:118965158-118965397(-)$1	239	46	51	14.9999
BBQQQ	chr1:22175330-22175556(-)$1	226	3	8	14.9999
4====	chr17:41167486-41167754(-)$1	268	140	145	14.9999
cc22c	chr16:70415408-70415670(-)$1	262	227	232	14.9999
eeooo	chr7:75615657-75615918(+)$1	261	144	149	14.9999
eeee3	chr16:70433285-70433534(-)$1	249	44	49	14.9999
CKKFF	chr19:3053319-3053573(-)$1	254	16	21	14.9999
hhhhh	chr8:11688926-11689165(+)$1	239	124	129	14.9999
LLEEE	chr1:1684190-1684446(-)$1	256	33	38	14.9999
bb[dd	chr17:26883764-26884058(-)$1	294	117	122	14.9999
ccccc	chr19:50361751-50362006(+)$1	255	85	90	14.9999
fffff	chr17:37076672-37076888(+)$1	216	177	182	14.9999
d]ccc	chr9:35697624-35697839(-)$1	215	162	167	14.9999
:eeee	chr8:146016592-146016805(-)$1	213	1	6	14.9999
ee[ff	chr19:49995037-49995262(+)$1	225	67	72	14.9999
IIIII	chr1:54871779-54872065(-)$1	286	218	223	14.9999
::iii	chr6:34212554-34212778(+)$1	224	119	124	14.9999
""eee	chr19:56599060-56599311(-)$1	251	139	144	14.9999
GGG{B	chr6:34204898-34205137(+)$1	239	19	24	14.9999
FFFFF	chr16:70415087-70415369(-)$1	282	256	261	14.9999
GGfff	chrX:153581039-153581263(-)$1	224	119	124	14.9999
dd:FF	chr20:32883141-32883438(-)$1	297	56	61	14.9999
eeeee	chr15:91455761-91455995(+)$1	234	208	213	14.9999
eeeee	chrX:153582961-153583175(-)$1	214	31	36	14.9999
zzzcc	chr19:41271064-41271352(+)$1	288	24	29	14.9999
ooccc	chr3:53262048-53262265(-)$1	217	10	15	14.9999
BB:::	chr6:30695554-30695820(-)$1	266	214	219	14.9999
a]ccc	chr1:228286480-228286715(+)$1	235	176	181	14.9999
fffff	chr6:32947631-32947912(+)$1	281	83	88	14.9999
ogggg	chrX:153590834-153591046(-)$1	212	23	28	14.9999
ccccc	chr12:49521965-49522212(-)$1	247	62	67	14.9999
CCC}F	chr16:88709657-88709902(-)$1	245	220	225	14.9999
:::dd	chr17:27206468-27206717(-)$1	249	58	63	14.9999
ffff4	chrX:153578048-153578303(-)$1	255	46	51	14.9999
DDD}B	chr17:79674183-79674440(+)$1	257	205	210	14.9999
cc[bb	chr16:89627538-89627742(+)$1	204	46	51	14.9999
ggggg	chr12:120636433-120636641(-)$1	208	2	7	14.9999
IIIII	chr22:20302133-20302424(-)$1	291	2	7	14.9999
NNNDD	chr22:42301436-42301665(+)$1	229	18	23	14.9999
FFFFF	chr12:6643629-6643835(+)$1	206	0	5	14.9999
JJJJJ	chr19:36640774-36641115(+)$1	341	69	74	14.9999
ggggg	chr3:49137361-49137600(-)$1	239	53	58	14.9999
GGGGG	chr21:45733747-45734005(+)$1	258	171	176	14.9999
[ffff	chr19:18649008-18649270(-)$1	262	4	9	14.9999
fffff	chr1:116926545-116926793(+)$1	248	110	115	14.9999
cqqqq	chr17:74386411-74386678(-)$1	267	226	231	14.9999
d[a!!	chrX:153590567-153590787(-)$1	220	79	84	14.9999
eeeee	chr19:46324587-46324844(-)$1	257	90	95	14.9999
bb!!b	chrX:153277935-153278177(-)$1	242	165	170	14.9999
gggg:	chr1:11849560-11849803(-)$1	243	50	55	14.9999
nnnnn	chr22:21976802-21977053(+)$1	251	223	228	14.9999

#DB
)))))	chr15:91456443-91456707(+)$1	1	204	209	14.9999
))).(	chr17:80477543-80477827(+)$1	1	156	161	14.9999
(....	chr1:36806923-36807171(-)$1	1	129	134	14.9999
.))))	chr12:124968041-124968285(-)$1	1	71	76	14.9999
))..)	chrX:153579250-153579475(-)$1	1	109	114	14.9999
(((((	chr19:52709121-52709410(+)$1	1	0	5	14.9999
(((((	chr15:58247213-58247497(-)$1	1	130	135	14.9999
(((..	chr19:1985835-1986105(-)$1	1	29	34	14.9999
....)	chrX:153590685-153590895(-)$1	1	187	192	14.9999
)))))	chr19:991937-992188(+)$1	1	83	88	14.9999
)).))	chr7:150069436-150069672(+)$1	1	187	192	14.9999
((.((	chr22:37425419-37425684(+)$1	1	1	6	14.9999
)))))	chr8:124219759-124220087(+)$1	1	107	112	14.9999
.))))	chr19:39220323-39220551(+)$1	1	162	167	14.9999
.))))	chr17:79890276-79890547(-)$1	1	161	166	14.9999
((((.	chr11:118965158-118965397(-)$1	1	46	51	14.9999
((...	chr1:22175330-22175556(-)$1	1	3	8	14.9999
.))))	chr17:41167486-41167754(-)$1	1	140	145	14.9999
))..)	chr16:70415408-70415670(-)$1	1	227	232	14.9999
((...	chr7:75615657-75615918(+)$1	1	144	149	14.9999
)))).	chr16:70433285-70433534(-)$1	1	44	49	14.9999
(..((	chr19:3053319-3053573(-)$1	1	16	21	14.9999
(((((	chr8:11688926-11689165(+)$1	1	124	129	14.9999
..(((	chr1:1684190-1684446(-)$1	1	33	38	14.9999
((.((	chr17:26883764-26884058(-)$1	1	117	122	14.9999
(((((	chr19:50361751-50362006(+)$1	1	85	90	14.9999
)))))	chr17:37076672-37076888(+)$1	1	177	182	14.9999
).)))	chr9:35697624-35697839(-)$1	1	162	167	14.9999
.((((	chr8:146016592-146016805(-)$1	1	1	6	14.9999
((.((	chr19:49995037-49995262(+)$1	1	67	72	14.9999
)))))	chr1:54871779-54872065(-)$1	1	218	223	14.9999
..(((	chr6:34212554-34212778(+)$1	1	119	124	14.9999
..(((	chr19:56599060-56599311(-)$1	1	139	144	14.9999
(((.(	chr6:34204898-34205137(+)$1	1	19	24	14.9999
)))))	chr16:70415087-70415369(-)$1	1	256	261	14.9999
(((((	chrX:153581039-153581263(-)$1	1	119	124	14.9999
)).((	chr20:32883141-32883438(-)$1	1	56	61	14.9999
)))))	chr15:91455761-91455995(+)$1	1	208	213	14.9999
)))))	chrX:153582961-153583175(-)$1	1	31	36	14.9999
...))	chr19:41271064-41271352(+)$1	1	24	29	14.9999
..)))	chr3:53262048-53262265(-)$1	1	10	15	14.9999
))...	chr6:30695554-30695820(-)$1	1	214	219	14.9999
).)))	chr1:228286480-228286715(+)$1	1	176	181	14.9999
(((((	chr6:32947631-32947912(+)$1	1	83	88	14.9999
.))))	chrX:153590834-153591046(-)$1	1	23	28	14.9999
)))))	chr12:49521965-49522212(-)$1	1	62	67	14.9999
))).)	chr16:88709657-88709902(-)$1	1	220	225	14.9999
...((	chr17:27206468-27206717(-)$1	1	58	63	14.9999
)))).	chrX:153578048-153578303(-)$1	1	46	51	14.9999
))).)	chr17:79674183-79674440(+)$1	1	205	210	14.9999
((.((	chr16:89627538-89627742(+)$1	1	46	51	14.9999
(((((	chr12:120636433-120636641(-)$1	1	2	7	14.9999
(((((	chr22:20302133-20302424(-)$1	1	2	7	14.9999
...((	chr22:42301436-42301665(+)$1	1	18	23	14.9999
(((((	chr12:6643629-6643835(+)$1	1	0	5	14.9999
(((((	chr19:36640774-36641115(+)$1	1	69	74	14.9999
(((((	chr3:49137361-49137600(-)$1	1	53	58	14.9999
)))))	chr21:45733747-45734005(+)$1	1	171	176	14.9999
.((((	chr19:18649008-18649270(-)$1	1	4	9	14.9999
)))))	chr1:116926545-116926793(+)$1	1	110	115	14.9999
(....	chr17:74386411-74386678(-)$1	1	226	231	14.9999
(.(..	chrX:153590567-153590787(-)$1	1	79	84	14.9999
(((((	chr19:46324587-46324844(-)$1	1	90	95	14.9999
((..(	chrX:153277935-153278177(-)$1	1	165	170	14.9999
)))).	chr1:11849560-11849803(-)$1	1	50	55	14.9999
.....	chr22:21976802-21977053(+)$1	1	223	228	14.9999

#PSSM
G : 0.98	g : 0.01	
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	989.9999999999999
#seq	66
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_UTR_m2_run2.nuc.txt

#NT
AGGAGAAG	chrX:152954870-152955129(+)$1	259	155	163	16.5000
agaagaag	chr13:31035388-31035658(-)$1	270	140	148	20.4285
aguagaag	chr2:70124693-70124979(+)$1	286	109	117	16.2321
AGAAGAAG	chr1:59249180-59249443(-)$1	263	174	182	20.4285
agaagaag	chr3:184039713-184039955(+)$1	242	32	40	20.4285
ggaagaag	chr9:100777582-100777870(+)$1	288	67	75	16.4107
AGCAGAAG	chr21:33974496-33974779(-)$1	283	148	156	16.4107
AGAAGGAG	chr16:89350383-89350616(-)$1	233	35	43	16.4107
AGAAGUAG	chr5:65474543-65474846(+)$1	303	44	52	16.3214
agaagaag	chr14:102551066-102551299(-)$1	233	23	31	20.4285
AAAAGAAG	chr16:89348959-89349230(-)$1	271	8	16	15.9642
AGAAGAAG	chr2:232577052-232577316(+)$1	264	189	197	20.4285
AUAAGAAG	chr12:123006586-123006871(-)$1	285	244	252	15.8750
AGAAGAAG	chr1:150192947-150193165(-)$1	218	100	108	20.4285
AGAAGAAG	chr16:4910572-4910894(+)$1	322	118	126	20.4285
AGAGGAAG	chr11:35684370-35684617(+)$1	247	57	65	15.6964
GGAAGAAG	chr15:41641297-41641535(+)$1	238	57	65	16.4107
AGGAGAAG	chr4:76580147-76580498(-)$1	351	163	171	16.5000
AGCAGAAG	chr19:4499428-4499668(+)$1	240	100	108	16.4107
AGAAGAUG	chr1:24989050-24989305(+)$1	255	122	130	16.7678
GGAAGAAG	chr18:55282809-55283061(-)$1	252	131	139	16.4107
AGAUGAAG	chr19:55648369-55648602(-)$1	233	59	67	15.6964
UGAAGAAG	chr5:131953814-131954074(+)$1	260	25	33	16.3214
AGAAGGAG	chrX:118986701-118986995(-)$1	294	114	122	16.4107
AGAAGGAG	chr17:7849081-7849342(+)$1	261	7	15	16.4107
AGAAAAAG	chr6:32945846-32946075(+)$1	229	135	143	15.7857
ACAAGAAG	chr7:99935715-99935988(+)$1	273	86	94	15.8750
AGAAGAUG	chr2:187368679-187368932(+)$1	253	222	230	16.7678
AGAAGAAG	chr1:29475196-29475422(-)$1	226	190	198	20.4285
GGAAGAAG	chr3:196214111-196214383(-)$1	272	14	22	16.4107
UGAAGAAG	chr22:42017970-42018191(+)$1	221	76	84	16.3214
AGAAGCAG	chr11:129992098-129992328(+)$1	230	137	145	16.4107
AGAAGAAG	chr11:66391683-66391921(+)$1	238	115	123	20.4285
AAAAGAAG	chr3:184043013-184043250(+)$1	237	89	97	15.9642
AGAAGCAG	chr11:129992153-129992488(+)$1	335	82	90	16.4107
AGAAGAAG	chr15:69072334-69072584(-)$1	250	101	109	20.4285
UGAAGAAG	chr12:62926133-62926438(+)$1	305	237	245	16.3214
agaagaug	chr4:174253016-174253273(-)$1	257	0	8	16.7678
agaagaag	chr4:174253129-174253346(-)$1	217	30	38	20.4285
AGAAGAUG	chr2:132021392-132021670(+)$1	278	85	93	16.7678
AGAAGAAG	chr6:111346594-111346853(+)$1	259	15	23	20.4285
AGAACAAG	chr16:57200904-57201194(-)$1	290	87	95	15.8750
AGAAGAUG	chr22:21224523-21224820(+)$1	297	138	146	16.7678
AGAAGACG	chr19:47228694-47228956(-)$1	262	76	84	16.2321
AGAAGAUG	chr7:6461293-6461558(-)$1	265	247	255	16.7678
AGAAGAAG	chr1:109780351-109780618(+)$1	267	64	72	20.4285
AGAAGUAG	chr16:4881949-4882240(-)$1	291	72	80	16.3214
AGAAGAUG	chr7:6461254-6461493(-)$1	239	182	190	16.7678
AGGAGAAG	chr11:3023673-3023933(-)$1	260	110	118	16.5000
AGAACAAG	chr1:39790263-39790495(+)$1	232	83	91	15.8750
AGAAGAAG	chr11:118919443-118919682(-)$1	239	142	150	20.4285
AGAAGAAG	chr3:180325398-180325690(+)$1	292	40	48	20.4285
AGCAGAAG	chr20:57242955-57243269(+)$1	314	112	120	16.4107
AGAAGCAG	chr9:117138807-117139076(-)$1	269	225	233	16.4107
AGAAGAAG	chr12:56559290-56559584(-)$1	294	18	26	20.4285

#otherMatches

#Struct PSSM
{CCCLLLC	chr3:14199955-14200279(-)$1	324	122	130	16.5000
qqqqqqqq	chrX:152954870-152955129(+)$1	259	155	163	16.5000
========	chr13:31035388-31035658(-)$1	270	140	148	20.4285
::::iiii	chr2:70124693-70124979(+)$1	286	109	117	16.2321
gg::::::	chr1:59249180-59249443(-)$1	263	174	182	20.4285
ee]bb:::	chr3:184039713-184039955(+)$1	242	32	40	20.4285
2bb333cc	chr9:100777582-100777870(+)$1	288	67	75	16.4107
bb$$$$$e	chr21:33974496-33974779(-)$1	283	148	156	16.4107
ddd::ccc	chr16:89350383-89350616(-)$1	233	35	43	16.4107
::::EEEE	chr5:65474543-65474846(+)$1	303	44	52	16.3214
::::::::	chr14:102551066-102551299(-)$1	233	23	31	20.4285
:::::::b	chr16:89348959-89349230(-)$1	271	8	16	15.9642
ba!!ccco	chr2:232577052-232577316(+)$1	264	189	197	20.4285
////GGGG	chr12:123006586-123006871(-)$1	285	244	252	15.8750
!eeeeeoo	chr1:150192947-150193165(-)$1	218	100	108	20.4285
]dddd:::	chr16:4910572-4910894(+)$1	322	118	126	20.4285
mmmma22h	chr11:35684370-35684617(+)$1	247	57	65	15.6964
uuuuuuue	chr15:41641297-41641535(+)$1	238	57	65	16.4107
ggggg[bb	chr4:76580147-76580498(-)$1	351	163	171	16.5000
EEE?????	chr19:4499428-4499668(+)$1	240	100	108	16.4107
mbb]bb]b	chr1:24989050-24989305(+)$1	255	122	130	16.7678
dd[ccc%%	chr18:55282809-55283061(-)$1	252	131	139	16.4107
vvvvvvvv	chr19:55648369-55648602(-)$1	233	59	67	15.6964
eeeee%%%	chr5:131953814-131954074(+)$1	260	25	33	16.3214
:DDDDYYB	chrX:118986701-118986995(-)$1	294	114	122	16.4107
BB:FFFFF	chr17:7849081-7849342(+)$1	261	7	15	16.4107
}GGGGGGG	chr6:32945846-32946075(+)$1	229	135	143	15.7857
++++++++	chr7:99935715-99935988(+)$1	273	86	94	15.8750
::::eeee	chr2:187368679-187368932(+)$1	253	222	230	16.7678
::::::::	chr1:29475196-29475422(-)$1	226	190	198	20.4285
EEEEEKKE	chr3:196214111-196214383(-)$1	272	14	22	16.4107
cc!!dddd	chr22:42017970-42018191(+)$1	221	76	84	16.3214
ggoooooo	chr11:129992098-129992328(+)$1	230	137	145	16.4107
bb!!eeee	chr11:66391683-66391921(+)$1	238	115	123	20.4285
::::::::	chr3:184043013-184043250(+)$1	237	89	97	15.9642
ggoooooo	chr11:129992153-129992488(+)$1	335	82	90	16.4107
mddddggg	chr15:69072334-69072584(-)$1	250	101	109	20.4285
ffffffmm	chr12:62926133-62926438(+)$1	305	237	245	16.3214
::::::::	chr4:174253016-174253273(-)$1	257	0	8	16.7678
::::::::	chr4:174253129-174253346(-)$1	217	30	38	20.4285
!ccc[ddd	chr2:132021392-132021670(+)$1	278	85	93	16.7678
ff^^^^^^	chr6:111346594-111346853(+)$1	259	15	23	20.4285
ff888888	chr16:57200904-57201194(-)$1	290	87	95	15.8750
CC:::::e	chr22:21224523-21224820(+)$1	297	138	146	16.7678
::::ccc[	chr19:47228694-47228956(-)$1	262	76	84	16.2321
bnnnnnbb	chr7:6461293-6461558(-)$1	265	247	255	16.7678
cc55555c	chr1:109780351-109780618(+)$1	267	64	72	20.4285
::dddd!!	chr16:4881949-4882240(-)$1	291	72	80	16.3214
ooooa]cc	chr7:6461254-6461493(-)$1	239	182	190	16.7678
5dddd]ee	chr11:3023673-3023933(-)$1	260	110	118	16.5000
e4444ccc	chr1:39790263-39790495(+)$1	232	83	91	15.8750
++++++++	chr11:118919443-118919682(-)$1	239	142	150	20.4285
dd"""eee	chr3:180325398-180325690(+)$1	292	40	48	20.4285
""bbnnnn	chr20:57242955-57243269(+)$1	314	112	120	16.4107
qqqqqqqq	chr9:117138807-117139076(-)$1	269	225	233	16.4107
g::::::C	chr12:56559290-56559584(-)$1	294	18	26	20.4285

#DB
.(((...(	chr3:14199955-14200279(-)$1	1	122	130	16.5000
........	chrX:152954870-152955129(+)$1	1	155	163	16.5000
((((((((	chr13:31035388-31035658(-)$1	1	140	148	20.4285
....((((	chr2:70124693-70124979(+)$1	1	109	117	16.2321
))......	chr1:59249180-59249443(-)$1	1	174	182	20.4285
)).))...	chr3:184039713-184039955(+)$1	1	32	40	20.4285
.))...))	chr9:100777582-100777870(+)$1	1	67	75	16.4107
((.....(	chr21:33974496-33974779(-)$1	1	148	156	16.4107
)))..(((	chr16:89350383-89350616(-)$1	1	35	43	16.4107
....((((	chr5:65474543-65474846(+)$1	1	44	52	16.3214
........	chr14:102551066-102551299(-)$1	1	23	31	20.4285
.......(	chr16:89348959-89349230(-)$1	1	8	16	15.9642
((..(((.	chr2:232577052-232577316(+)$1	1	189	197	20.4285
....))))	chr12:123006586-123006871(-)$1	1	244	252	15.8750
.(((((..	chr1:150192947-150193165(-)$1	1	100	108	20.4285
.))))...	chr16:4910572-4910894(+)$1	1	118	126	20.4285
....)..)	chr11:35684370-35684617(+)$1	1	57	65	15.6964
.......)	chr15:41641297-41641535(+)$1	1	57	65	16.4107
(((((.((	chr4:76580147-76580498(-)$1	1	163	171	16.5000
))).....	chr19:4499428-4499668(+)$1	1	100	108	16.4107
.)).)).)	chr1:24989050-24989305(+)$1	1	122	130	16.7678
((.(((..	chr18:55282809-55283061(-)$1	1	131	139	16.4107
........	chr19:55648369-55648602(-)$1	1	59	67	15.6964
(((((...	chr5:131953814-131954074(+)$1	1	25	33	16.3214
.))))..)	chrX:118986701-118986995(-)$1	1	114	122	16.4107
((.(((((	chr17:7849081-7849342(+)$1	1	7	15	16.4107
.)))))))	chr6:32945846-32946075(+)$1	1	135	143	15.7857
........	chr7:99935715-99935988(+)$1	1	86	94	15.8750
....((((	chr2:187368679-187368932(+)$1	1	222	230	16.7678
........	chr1:29475196-29475422(-)$1	1	190	198	20.4285
(((((..(	chr3:196214111-196214383(-)$1	1	14	22	16.4107
((..((((	chr22:42017970-42018191(+)$1	1	76	84	16.3214
((......	chr11:129992098-129992328(+)$1	1	137	145	16.4107
((..((((	chr11:66391683-66391921(+)$1	1	115	123	20.4285
........	chr3:184043013-184043250(+)$1	1	89	97	15.9642
((......	chr11:129992153-129992488(+)$1	1	82	90	16.4107
.)))))))	chr15:69072334-69072584(-)$1	1	101	109	20.4285
((((((..	chr12:62926133-62926438(+)$1	1	237	245	16.3214
........	chr4:174253016-174253273(-)$1	1	0	8	16.7678
........	chr4:174253129-174253346(-)$1	1	30	38	20.4285
.(((.(((	chr2:132021392-132021670(+)$1	1	85	93	16.7678
((......	chr6:111346594-111346853(+)$1	1	15	23	20.4285
))......	chr16:57200904-57201194(-)$1	1	87	95	15.8750
)).....(	chr22:21224523-21224820(+)$1	1	138	146	16.7678
....(((.	chr19:47228694-47228956(-)$1	1	76	84	16.2321
(.....))	chr7:6461293-6461558(-)$1	1	247	255	16.7678
)).....)	chr1:109780351-109780618(+)$1	1	64	72	20.4285
..((((..	chr16:4881949-4882240(-)$1	1	72	80	16.3214
....).))	chr7:6461254-6461493(-)$1	1	182	190	16.7678
.)))).))	chr11:3023673-3023933(-)$1	1	110	118	16.5000
)....)))	chr1:39790263-39790495(+)$1	1	83	91	15.8750
........	chr11:118919443-118919682(-)$1	1	142	150	20.4285
((...(((	chr3:180325398-180325690(+)$1	1	40	48	20.4285
..((....	chr20:57242955-57243269(+)$1	1	112	120	16.4107
........	chr9:117138807-117139076(-)$1	1	225	233	16.4107
)......(	chr12:56559290-56559584(-)$1	1	18	26	20.4285

#PSSM
A : 0.76	a : 0.10	G : 0.05	U : 0.05	g : 0.01	
G : 0.80	g : 0.12	A : 0.03	U : 0.01	C : 0.01	
A : 0.75	a : 0.10	G : 0.07	C : 0.05	u : 0.01	
A : 0.83	a : 0.12	G : 0.01	U : 0.01	
G : 0.82	g : 0.12	C : 0.03	A : 0.01	
A : 0.73	a : 0.12	G : 0.05	C : 0.05	U : 0.03	
A : 0.75	a : 0.10	U : 0.10	u : 0.01	C : 0.01	
G : 0.87	g : 0.12	

#score	980.2500000000005
#seq	56
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_CDS_m1_run2.nuc.txt

#NT
GCGUGGG	chrX:152954046-152954287(+)$1	241	176	183	13.2222
GUGGGGG	chr19:4033476-4033760(+)$1	284	207	214	14.1481
GCGGGGC	chr11:63743596-63743845(+)$1	249	8	15	13.5925
GCGGGGG	chr1:22155775-22156000(-)$1	225	38	45	17.4814
GCGGGGC	chr22:21983344-21983575(-)$1	231	21	28	13.5925
GCGGGGG	chrM:14216-14450(-)$1	234	199	206	17.4814
GUGGGGG	chr17:80050762-80050972(-)$1	210	25	32	14.1481
UCGGGGG	chr19:59056282-59056528(+)$1	246	148	155	13.0370
GCGGGAG	chr17:76117512-76117838(-)$1	326	92	99	13.0370
gcggggg	chr19:10407088-10407332(+)$1	244	138	145	17.4814
GCGGGGA	chr22:50018397-50018654(-)$1	257	101	108	13.5925
GUGGGGG	chr5:176916992-176917261(-)$1	269	64	71	14.1481
GCGGGGG	chr12:123997699-123998012(-)$1	313	166	173	17.4814
GCCGGGG	chr19:18547567-18547863(-)$1	296	97	104	13.7777
GCGGGGA	chr19:803389-803662(+)$1	273	170	177	13.5925
GCGGGGG	chr19:2270411-2270656(+)$1	245	89	96	17.4814
GUGGGGG	chr22:50016658-50016910(-)$1	252	2	9	14.1481
GCCGGGG	chr6:31601552-31601835(+)$1	283	99	106	13.7777
GCGGGGG	chr1:22155800-22156052(-)$1	252	90	97	17.4814
GCGGGUG	chr1:22155427-22155672(-)$1	245	188	195	13.0370
GCGGGGG	chr17:73892406-73892773(-)$1	367	268	275	17.4814
CCGGGGG	chr16:29817999-29818247(+)$1	248	85	92	13.0370
GCGGGGG	chr5:154135292-154135583(+)$1	291	158	165	17.4814
GCCGGGG	chr16:28878127-28878395(+)$1	268	93	100	13.7777
GCUGGGG	chr19:4037216-4037476(+)$1	260	93	100	13.4074
GCGUGGG	chrX:152954103-152954376(+)$1	273	119	126	13.2222

#otherMatches

#Struct PSSM
iiiiiii	chr4:78740041-78740317(-)$1	276	34	41	13.5925
ffffccc	chrX:152954046-152954287(+)$1	241	176	183	13.2222
bb]ffff	chr19:4033476-4033760(+)$1	284	207	214	14.1481
GGGGGGG	chr11:63743596-63743845(+)$1	249	8	15	13.5925
gggggg5	chr1:22155775-22156000(-)$1	225	38	45	17.4814
mmddddg	chr22:21983344-21983575(-)$1	231	21	28	13.5925
[ccc[a[	chrM:14216-14450(-)$1	234	199	206	17.4814
gggeeee	chr17:80050762-80050972(-)$1	210	25	32	14.1481
qqbb]bb	chr19:59056282-59056528(+)$1	246	148	155	13.0370
ddddmmm	chr17:76117512-76117838(-)$1	326	92	99	13.0370
GGGGGGG	chr19:10407088-10407332(+)$1	244	138	145	17.4814
bbb"""b	chr22:50018397-50018654(-)$1	257	101	108	13.5925
]iiiiii	chr5:176916992-176917261(-)$1	269	64	71	14.1481
cc!!fff	chr12:123997699-123998012(-)$1	313	166	173	17.4814
gggggg!	chr19:18547567-18547863(-)$1	296	97	104	13.7777
fff]ccc	chr19:803389-803662(+)$1	273	170	177	13.5925
c[ccc[b	chr19:2270411-2270656(+)$1	245	89	96	17.4814
::cccbb	chr22:50016658-50016910(-)$1	252	2	9	14.1481
dccc"""	chr6:31601552-31601835(+)$1	283	99	106	13.7777
gggggg5	chr1:22155800-22156052(-)$1	252	90	97	17.4814
:gggggg	chr1:22155427-22155672(-)$1	245	188	195	13.0370
BEEEEE}	chr17:73892406-73892773(-)$1	367	268	275	17.4814
b[ddddf	chr16:29817999-29818247(+)$1	248	85	92	13.0370
e:::ddd	chr5:154135292-154135583(+)$1	291	158	165	17.4814
EEERRRR	chr16:28878127-28878395(+)$1	268	93	100	13.7777
fffff""	chr19:4037216-4037476(+)$1	260	93	100	13.4074
ffffccc	chrX:152954103-152954376(+)$1	273	119	126	13.2222

#DB
(((((((	chr4:78740041-78740317(-)$1	1	34	41	13.5925
)))))))	chrX:152954046-152954287(+)$1	1	176	183	13.2222
)).))))	chr19:4033476-4033760(+)$1	1	207	214	14.1481
(((((((	chr11:63743596-63743845(+)$1	1	8	15	13.5925
)))))).	chr1:22155775-22156000(-)$1	1	38	45	17.4814
..))))(	chr22:21983344-21983575(-)$1	1	21	28	13.5925
.(((.(.	chrM:14216-14450(-)$1	1	199	206	17.4814
)))((((	chr17:80050762-80050972(-)$1	1	25	32	14.1481
..)).))	chr19:59056282-59056528(+)$1	1	148	155	13.0370
((((...	chr17:76117512-76117838(-)$1	1	92	99	13.0370
(((((((	chr19:10407088-10407332(+)$1	1	138	145	17.4814
(((...(	chr22:50018397-50018654(-)$1	1	101	108	13.5925
.))))))	chr5:176916992-176917261(-)$1	1	64	71	14.1481
((..(((	chr12:123997699-123998012(-)$1	1	166	173	17.4814
((((((.	chr19:18547567-18547863(-)$1	1	97	104	13.7777
))).)))	chr19:803389-803662(+)$1	1	170	177	13.5925
(.(((.(	chr19:2270411-2270656(+)$1	1	89	96	17.4814
..(((((	chr22:50016658-50016910(-)$1	1	2	9	14.1481
((((...	chr6:31601552-31601835(+)$1	1	99	106	13.7777
)))))).	chr1:22155800-22156052(-)$1	1	90	97	17.4814
.((((((	chr1:22155427-22155672(-)$1	1	188	195	13.0370
)))))).	chr17:73892406-73892773(-)$1	1	268	275	17.4814
(.(((((	chr16:29817999-29818247(+)$1	1	85	92	13.0370
)...(((	chr5:154135292-154135583(+)$1	1	158	165	17.4814
(((....	chr16:28878127-28878395(+)$1	1	93	100	13.7777
(((((..	chr19:4037216-4037476(+)$1	1	93	100	13.4074
)))))))	chrX:152954103-152954376(+)$1	1	119	126	13.2222

#PSSM
G : 0.88	U : 0.03	g : 0.03	C : 0.03	
C : 0.77	U : 0.14	A : 0.03	c : 0.03	
G : 0.81	C : 0.11	g : 0.03	U : 0.03	
G : 0.88	U : 0.07	g : 0.03	
G : 0.96	g : 0.03	
G : 0.88	A : 0.03	g : 0.03	U : 0.03	
G : 0.81	C : 0.07	A : 0.07	g : 0.03	

#score	397.74074074074036
#seq	27
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_transcript_m1_run1.nuc.txt

#NT
UGG	chr3:197901245-197901508(+)$1	263	252	255	9.0000
UGG	chrM:14247-14494(-)$1	247	10	13	9.0000
UGG	chr11:65195580-65195813(+)$1	233	62	65	9.0000
UGG	chr11:65195640-65195898(+)$1	258	2	5	9.0000
UGG	chrM:14201-14410(-)$1	209	1	4	9.0000
UGG	chr5:134263320-134263577(+)$1	257	21	24	9.0000
UGG	chr19:34882786-34883090(+)$1	304	22	25	9.0000
UGG	chr12:53434480-53434723(+)$1	243	67	70	9.0000
UGG	chrM:14176-14401(-)$1	225	7	10	9.0000
ugg	chr8:9629517-9629782(+)$1	265	3	6	9.0000
UGG	chr19:34883338-34883586(+)$1	248	7	10	9.0000
UGG	chrM:12117-12338(+)$1	221	138	141	9.0000
UGG	chrM:494-712(+)$1	218	163	166	9.0000
UGG	chrM:12138-12347(+)$1	209	117	120	9.0000
UGG	chr22:22890135-22890452(-)$1	317	0	3	9.0000
UGG	chr11:65191216-65191497(+)$1	281	1	4	9.0000
UGG	chr11:65190582-65190875(+)$1	293	8	11	9.0000
UGG	chr1:569795-570084(-)$1	289	4	7	9.0000
UGG	chrM:4345-4553(+)$1	208	103	106	9.0000
UGG	chrM:4319-4542(+)$1	223	129	132	9.0000
UGg	chr11:93454742-93454976(+)$1	234	87	90	9.0000
UGG	chr5:134260120-134260395(+)$1	275	4	7	9.0000
UGG	chr5:651376-651740(+)$1	364	9	12	9.0000
UGG	chrM:14366-14583(-)$1	217	18	21	9.0000
UGG	chrM:512-738(+)$1	226	145	148	9.0000
UGG	chr11:65270409-65270677(+)$1	268	86	89	9.0000
UGG	chrM:14383-14600(-)$1	217	6	9	9.0000
UGG	chrM:14218-14424(-)$1	206	15	18	9.0000
UGG	chr11:65268462-65268684(+)$1	222	2	5	9.0000
UGG	chr5:134262613-134262877(+)$1	264	54	57	9.0000
UGG	chrM:14226-14447(-)$1	221	16	19	9.0000
ugg	chr8:9629592-9629846(+)$1	254	32	35	9.0000
UGG	chr11:65194715-65194953(+)$1	238	9	12	9.0000
UGG	chr11:65192503-65192753(+)$1	250	24	27	9.0000
UGG	chrM:4353-4559(+)$1	206	95	98	9.0000
UGG	chrM:14210-14418(-)$1	208	9	12	9.0000
ugg	chr8:9628378-9628663(+)$1	285	78	81	9.0000
UGG	chr19:34882065-34882327(+)$1	262	25	28	9.0000
UGG	chrM:14160-14376(-)$1	216	6	9	9.0000
UGG	chr14:32954183-32954427(+)$1	244	43	46	9.0000
UGG	chr5:134259766-134260010(+)$1	244	1	4	9.0000
UGG	chr11:62620296-62620592(-)$1	296	68	71	9.0000
UGG	chrM:15037-15303(+)$1	266	177	180	9.0000
UGG	chr5:651661-651913(+)$1	252	29	32	9.0000
UGG	chr19:34874534-34874809(+)$1	275	48	51	9.0000
UGG	chr11:65192423-65192674(+)$1	251	4	7	9.0000
UGG	chr3:160232594-160232826(-)$1	232	16	19	9.0000
UGG	chr19:34882315-34882570(+)$1	255	41	44	9.0000
ugg	chr8:9629646-9629944(+)$1	298	41	44	9.0000
UGG	chr11:62609005-62609323(-)$1	318	3	6	9.0000
UGG	chrM:1425-1636(+)$1	211	144	147	9.0000
UGG	chr19:893460-893688(+)$1	228	2	5	9.0000
UGG	chr4:174253048-174253320(-)$1	272	91	94	9.0000
UGG	chr5:134260996-134261230(+)$1	234	30	33	9.0000
UGG	chr11:65190286-65190604(+)$1	318	11	14	9.0000
UGG	chrM:1436-1665(+)$1	229	133	136	9.0000

#otherMatches

#Struct PSSM
::a	chr16:88584198-88584456(+)$1	258	0	3	9.0000
fff	chr3:197901245-197901508(+)$1	263	252	255	9.0000
d""	chrM:14247-14494(-)$1	247	10	13	9.0000
ddd	chr11:65195580-65195813(+)$1	233	62	65	9.0000
:::	chr11:65195640-65195898(+)$1	258	2	5	9.0000
b[f	chrM:14201-14410(-)$1	209	1	4	9.0000
b[a	chr5:134263320-134263577(+)$1	257	21	24	9.0000
ggl	chr19:34882786-34883090(+)$1	304	22	25	9.0000
4ff	chr12:53434480-53434723(+)$1	243	67	70	9.0000
ggg	chrM:14176-14401(-)$1	225	7	10	9.0000
:::	chr8:9629517-9629782(+)$1	265	3	6	9.0000
JJJ	chr19:34883338-34883586(+)$1	248	7	10	9.0000
eeH	chrM:12117-12338(+)$1	221	138	141	9.0000
HHH	chrM:494-712(+)$1	218	163	166	9.0000
eeH	chrM:12138-12347(+)$1	209	117	120	9.0000
:::	chr22:22890135-22890452(-)$1	317	0	3	9.0000
ddd	chr11:65191216-65191497(+)$1	281	1	4	9.0000
GGG	chr11:65190582-65190875(+)$1	293	8	11	9.0000
GGG	chr1:569795-570084(-)$1	289	4	7	9.0000
hhh	chrM:4345-4553(+)$1	208	103	106	9.0000
hhh	chrM:4319-4542(+)$1	223	129	132	9.0000
nnf	chr11:93454742-93454976(+)$1	234	87	90	9.0000
:::	chr5:134260120-134260395(+)$1	275	4	7	9.0000
III	chr5:651376-651740(+)$1	364	9	12	9.0000
:::	chrM:14366-14583(-)$1	217	18	21	9.0000
HHH	chrM:512-738(+)$1	226	145	148	9.0000
ccc	chr11:65270409-65270677(+)$1	268	86	89	9.0000
G{C	chrM:14383-14600(-)$1	217	6	9	9.0000
d[f	chrM:14218-14424(-)$1	206	15	18	9.0000
:::	chr11:65268462-65268684(+)$1	222	2	5	9.0000
FFF	chr5:134262613-134262877(+)$1	264	54	57	9.0000
KKF	chrM:14226-14447(-)$1	221	16	19	9.0000
C{D	chr8:9629592-9629846(+)$1	254	32	35	9.0000
BB{	chr11:65194715-65194953(+)$1	238	9	12	9.0000
===	chr11:65192503-65192753(+)$1	250	24	27	9.0000
hhh	chrM:4353-4559(+)$1	206	95	98	9.0000
d[f	chrM:14210-14418(-)$1	208	9	12	9.0000
iii	chr8:9628378-9628663(+)$1	285	78	81	9.0000
rrr	chr19:34882065-34882327(+)$1	262	25	28	9.0000
a[e	chrM:14160-14376(-)$1	216	6	9	9.0000
e[b	chr14:32954183-32954427(+)$1	244	43	46	9.0000
B{G	chr5:134259766-134260010(+)$1	244	1	4	9.0000
d22	chr11:62620296-62620592(-)$1	296	68	71	9.0000
eee	chrM:15037-15303(+)$1	266	177	180	9.0000
ggm	chr5:651661-651913(+)$1	252	29	32	9.0000
CC{	chr19:34874534-34874809(+)$1	275	48	51	9.0000
EFF	chr11:65192423-65192674(+)$1	251	4	7	9.0000
hhh	chr3:160232594-160232826(-)$1	232	16	19	9.0000
FMM	chr19:34882315-34882570(+)$1	255	41	44	9.0000
ccc	chr8:9629646-9629944(+)$1	298	41	44	9.0000
FFF	chr11:62609005-62609323(-)$1	318	3	6	9.0000
bb:	chrM:1425-1636(+)$1	211	144	147	9.0000
:::	chr19:893460-893688(+)$1	228	2	5	9.0000
b33	chr4:174253048-174253320(-)$1	272	91	94	9.0000
===	chr5:134260996-134261230(+)$1	234	30	33	9.0000
JJJ	chr11:65190286-65190604(+)$1	318	11	14	9.0000
bb:	chrM:1436-1665(+)$1	229	133	136	9.0000

#DB
..(	chr16:88584198-88584456(+)$1	1	0	3	9.0000
)))	chr3:197901245-197901508(+)$1	1	252	255	9.0000
(..	chrM:14247-14494(-)$1	1	10	13	9.0000
)))	chr11:65195580-65195813(+)$1	1	62	65	9.0000
...	chr11:65195640-65195898(+)$1	1	2	5	9.0000
(.(	chrM:14201-14410(-)$1	1	1	4	9.0000
(.(	chr5:134263320-134263577(+)$1	1	21	24	9.0000
((.	chr19:34882786-34883090(+)$1	1	22	25	9.0000
.))	chr12:53434480-53434723(+)$1	1	67	70	9.0000
(((	chrM:14176-14401(-)$1	1	7	10	9.0000
...	chr8:9629517-9629782(+)$1	1	3	6	9.0000
(((	chr19:34883338-34883586(+)$1	1	7	10	9.0000
)))	chrM:12117-12338(+)$1	1	138	141	9.0000
)))	chrM:494-712(+)$1	1	163	166	9.0000
)))	chrM:12138-12347(+)$1	1	117	120	9.0000
...	chr22:22890135-22890452(-)$1	1	0	3	9.0000
(((	chr11:65191216-65191497(+)$1	1	1	4	9.0000
(((	chr11:65190582-65190875(+)$1	1	8	11	9.0000
(((	chr1:569795-570084(-)$1	1	4	7	9.0000
(((	chrM:4345-4553(+)$1	1	103	106	9.0000
(((	chrM:4319-4542(+)$1	1	129	132	9.0000
..)	chr11:93454742-93454976(+)$1	1	87	90	9.0000
...	chr5:134260120-134260395(+)$1	1	4	7	9.0000
(((	chr5:651376-651740(+)$1	1	9	12	9.0000
...	chrM:14366-14583(-)$1	1	18	21	9.0000
)))	chrM:512-738(+)$1	1	145	148	9.0000
(((	chr11:65270409-65270677(+)$1	1	86	89	9.0000
(.(	chrM:14383-14600(-)$1	1	6	9	9.0000
(.(	chrM:14218-14424(-)$1	1	15	18	9.0000
...	chr11:65268462-65268684(+)$1	1	2	5	9.0000
(((	chr5:134262613-134262877(+)$1	1	54	57	9.0000
..(	chrM:14226-14447(-)$1	1	16	19	9.0000
(.(	chr8:9629592-9629846(+)$1	1	32	35	9.0000
((.	chr11:65194715-65194953(+)$1	1	9	12	9.0000
(((	chr11:65192503-65192753(+)$1	1	24	27	9.0000
(((	chrM:4353-4559(+)$1	1	95	98	9.0000
(.(	chrM:14210-14418(-)$1	1	9	12	9.0000
(((	chr8:9628378-9628663(+)$1	1	78	81	9.0000
...	chr19:34882065-34882327(+)$1	1	25	28	9.0000
(.(	chrM:14160-14376(-)$1	1	6	9	9.0000
(.(	chr14:32954183-32954427(+)$1	1	43	46	9.0000
(.(	chr5:134259766-134260010(+)$1	1	1	4	9.0000
)..	chr11:62620296-62620592(-)$1	1	68	71	9.0000
)))	chrM:15037-15303(+)$1	1	177	180	9.0000
((.	chr5:651661-651913(+)$1	1	29	32	9.0000
((.	chr19:34874534-34874809(+)$1	1	48	51	9.0000
(((	chr11:65192423-65192674(+)$1	1	4	7	9.0000
(((	chr3:160232594-160232826(-)$1	1	16	19	9.0000
(..	chr19:34882315-34882570(+)$1	1	41	44	9.0000
)))	chr8:9629646-9629944(+)$1	1	41	44	9.0000
(((	chr11:62609005-62609323(-)$1	1	3	6	9.0000
)).	chrM:1425-1636(+)$1	1	144	147	9.0000
...	chr19:893460-893688(+)$1	1	2	5	9.0000
)..	chr4:174253048-174253320(-)$1	1	91	94	9.0000
(((	chr5:134260996-134261230(+)$1	1	30	33	9.0000
(((	chr11:65190286-65190604(+)$1	1	11	14	9.0000
)).	chrM:1436-1665(+)$1	1	133	136	9.0000

#PSSM
U : 0.91	u : 0.08	
G : 0.91	g : 0.08	
G : 0.89	g : 0.10	

#score	513.0000000000002
#seq	57
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_UTR_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
BBBB{JJJJJJJJJJJJMMMMCCCJJJJJJJJJJ:::::ggggggg&&&&&&&bb[ddddbb[iiiiiiiiipppppppiiiiiiiii]bb]dddd]bb4444gggggggccc####bbbbnnnnnbb]bb333ccc:JJJJJJJJJJ|||||||CCCZZZJJJJJJJJJJJJ}BB}BB~~~~EEEEE:::FFFFFF:ddddmmmmdddd:::eeeee[ccc$$$$$dddd!!bbqqqqqqqqbb22dddd4444ccceeeeeeeeee[ffffff"""eeeee[ddddbb[dddd&&&&&&&eeeee"""ccc[ffffff####eeeeeb	chr17:48827772-48828232(+)$1	460	10	340	990.0000

#DB
((((.((((((((((((....(((((((((((((.....(((((((.......((.((((((.(((((((((.......))))))))).)).)))).))....)))))))(((....((((.....)).))...))).)))))))))).......)))...)))))))))))).)).))....)))))...((((((.((((....))))...(((((.(((.....((((..((........))..))))....))))))))(((((.((((((...(((((.((((((.((((.......(((((...(((.((((((....((((((	chr17:48827772-48828232(+)$1	1	10	340	990.0000

#PSSM
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	

#score	990.0
#seq	1
#width	330
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_UTR_m3_run1.nuc.txt

#NT
GCCCCUG	chr17:4800039-4800289(+)$1	250	123	130	13.3529
GCCCCCG	chr2:233415370-233415680(+)$1	310	101	108	16.8823
GCCCCCA	chr2:242168054-242168299(+)$1	245	149	156	12.7647
GCUCCCG	chr19:35991261-35991514(-)$1	253	133	140	12.6911
ACCCCCG	chr15:75198735-75199000(-)$1	265	3	10	12.4705
CCCCCCG	chr20:62331782-62332015(-)$1	233	103	110	12.6176
GCCGCCG	chr20:3748126-3748381(-)$1	255	13	20	13.2794
GGCCCCG	chr12:107168551-107168822(+)$1	271	68	75	13.0588
GCCCCCG	chr17:79650377-79650642(-)$1	265	58	65	16.8823
GCUCCCG	chr19:39125684-39125937(+)$1	253	226	233	12.6911
GCCCCUG	chr2:130938858-130939165(-)$1	307	119	126	13.3529
gcccccg	chr5:133340162-133340409(-)$1	247	27	34	16.8823
ACCCCCG	chr1:33478626-33478881(-)$1	255	22	29	12.4705
GCCCCCC	chr17:74732713-74732977(-)$1	264	15	22	12.6911
GCACCCG	chr11:61595999-61596241(+)$1	242	18	25	12.4705
Gcccccc	chr17:36904258-36904522(-)$1	264	2	9	12.6911
GCCCCCA	chr3:31705364-31705652(-)$1	288	160	167	12.7647
GCUCCCG	chr16:66864539-66864852(-)$1	313	254	261	12.6911
CCCCCCG	chr20:62331815-62332026(-)$1	211	114	121	12.6176
gcccccg	chr8:38644623-38644919(+)$1	296	32	39	16.8823
GCCCCCG	chr18:47018513-47018766(-)$1	253	22	29	16.8823
CCCCCCG	chr1:1019547-1019802(-)$1	255	50	57	12.6176
gaccccg	chr17:39942649-39942911(-)$1	262	37	44	12.6176
GGCCCCG	chr3:10362382-10362617(-)$1	235	24	31	13.0588
GCCGCCG	chr12:125398932-125399190(-)$1	258	96	103	13.2794
GGCCCCG	chr20:19998024-19998235(+)$1	211	120	127	13.0588
GCGCCCG	chr17:79651061-79651307(+)$1	246	0	7	12.5441
GCCCCGG	chr5:73935997-73936202(-)$1	205	87	94	13.2058
GGCCCCG	chr5:177631659-177631951(+)$1	292	56	63	13.0588
GCCCCUG	chr17:80441571-80441844(+)$1	273	215	222	13.3529
gcccccg	chr1:146714422-146714697(+)$1	275	233	240	16.8823
GCCCCCG	chr1:21112959-21113212(-)$1	253	38	45	16.8823
GCCGCCG	chr1:162336931-162337186(+)$1	255	7	14	13.2794
GCCGCCG	chr3:184080984-184081219(+)$1	235	175	182	13.2794
GCCCCCU	chr14:103800511-103800774(+)$1	263	106	113	12.5441
GCCCCGG	chr9:86595741-86596053(+)$1	312	134	141	13.2058
GCCCCGG	chr5:73935971-73936197(-)$1	226	82	89	13.2058
GCCCCAG	chr16:28847368-28847611(+)$1	243	4	11	13.2058
GCCACCG	chr17:37009762-37010014(-)$1	252	189	196	12.6911
GCCGCCG	chr7:150020569-150020829(+)$1	260	95	102	13.2794
GCCCCCG	chr11:18416142-18416415(+)$1	273	10	17	16.8823
GCCCCUG	chr14:24563576-24563826(+)$1	250	21	28	13.3529
GGCCCCG	chr20:19998035-19998286(+)$1	251	109	116	13.0588
GCCCCCC	chr17:8339412-8339669(+)$1	257	153	160	12.6911
GCCCCAG	chr9:135930356-135930614(+)$1	258	14	21	13.2058
GCCCCUG	chr1:45987295-45987544(-)$1	249	62	69	13.3529
GCCCCCA	chr11:72533513-72533775(+)$1	262	181	188	12.7647
GUCCCCG	chr22:36924937-36925194(-)$1	257	20	27	12.6176
GCCCCCA	chr14:104145831-104146092(+)$1	261	89	96	12.7647
gcccccg	chr2:9770836-9771120(-)$1	284	275	282	16.8823
GCCCCGG	chr5:73935956-73936171(-)$1	215	56	63	13.2058
GCCCCCG	chr19:18668653-18668973(+)$1	320	156	163	16.8823
GCCCCCG	chr2:163200709-163200979(+)$1	270	124	131	16.8823
GCCGCCG	chr1:226496637-226496884(-)$1	247	225	232	13.2794
GCCCCAG	chr21:45507700-45507977(+)$1	277	1	8	13.2058
GCGCCCG	chr8:48920954-48921219(+)$1	265	143	150	12.5441
GCCCCAG	chr1:193028837-193029097(+)$1	260	110	117	13.2058
GCUCCCG	chr5:138629412-138629679(+)$1	267	200	207	12.6911
GGCCCCG	chr20:55926404-55926687(+)$1	283	77	84	13.0588
GGCCCCG	chr19:1422321-1422576(+)$1	255	65	72	13.0588
GCCCUCG	chr9:33025278-33025552(+)$1	274	113	120	12.1029
gcccccg	chr3:5229939-5230192(+)$1	253	67	74	16.8823
CCCCCCG	chr20:44441403-44441646(+)$1	243	110	117	12.6176
GCCCCUG	chr6:74230519-74230780(-)$1	261	135	142	13.3529
GCCGCCG	chr3:184081019-184081291(+)$1	272	140	147	13.2794
GCCGCCG	chr14:78227256-78227525(-)$1	269	212	219	13.2794
GCCCGCG	chr2:182757286-182757556(+)$1	270	119	126	12.1029

#otherMatches

#Struct PSSM
eeeccc]	chr12:125398990-125399203(-)$1	213	109	116	13.2794
cc22eee	chr17:4800039-4800289(+)$1	250	123	130	13.3529
BBFFFFF	chr2:233415370-233415680(+)$1	310	101	108	16.8823
ddd:bbn	chr2:242168054-242168299(+)$1	245	149	156	12.7647
hh:::BB	chr19:35991261-35991514(-)$1	253	133	140	12.6911
::FFFFF	chr15:75198735-75199000(-)$1	265	3	10	12.4705
eeeee::	chr20:62331782-62332015(-)$1	233	103	110	12.6176
ggppppp	chr20:3748126-3748381(-)$1	255	13	20	13.2794
fffff[c	chr12:107168551-107168822(+)$1	271	68	75	13.0588
:dddddd	chr17:79650377-79650642(-)$1	265	58	65	16.8823
ppppppp	chr19:39125684-39125937(+)$1	253	226	233	12.6911
hhhhhhf	chr2:130938858-130939165(-)$1	307	119	126	13.3529
DDDDDDE	chr5:133340162-133340409(-)$1	247	27	34	16.8823
::::::e	chr1:33478626-33478881(-)$1	255	22	29	12.4705
dddffff	chr17:74732713-74732977(-)$1	264	15	22	12.6911
ee[eeee	chr11:61595999-61596241(+)$1	242	18	25	12.4705
CCIIIII	chr17:36904258-36904522(-)$1	264	2	9	12.6911
ffff:::	chr3:31705364-31705652(-)$1	288	160	167	12.7647
FFYYEEE	chr16:66864539-66864852(-)$1	313	254	261	12.6911
eeeeedd	chr20:62331815-62332026(-)$1	211	114	121	12.6176
iiiiii[	chr8:38644623-38644919(+)$1	296	32	39	16.8823
HHccc[e	chr18:47018513-47018766(-)$1	253	22	29	16.8823
c$$$$$b	chr1:1019547-1019802(-)$1	255	50	57	12.6176
E:ggggg	chr17:39942649-39942911(-)$1	262	37	44	12.6176
dddd[bb	chr3:10362382-10362617(-)$1	235	24	31	13.0588
eeeccc]	chr12:125398932-125399190(-)$1	258	96	103	13.2794
bbeeeee	chr20:19998024-19998235(+)$1	211	120	127	13.0588
DDDD{A{	chr17:79651061-79651307(+)$1	246	0	7	12.5441
ddddccc	chr5:73935997-73936202(-)$1	205	87	94	13.2058
GGGGGGG	chr5:177631659-177631951(+)$1	292	56	63	13.0588
ccmmmmc	chr17:80441571-80441844(+)$1	273	215	222	13.3529
JJJJJJJ	chr1:146714422-146714697(+)$1	275	233	240	16.8823
999hhhh	chr1:21112959-21113212(-)$1	253	38	45	16.8823
[a[bbhh	chr1:162336931-162337186(+)$1	255	7	14	13.2794
eee]ddd	chr3:184080984-184081219(+)$1	235	175	182	13.2794
g!!abbn	chr14:103800511-103800774(+)$1	263	106	113	12.5441
bb22eee	chr9:86595741-86596053(+)$1	312	134	141	13.2058
ddddccc	chr5:73935971-73936197(-)$1	226	82	89	13.2058
iiiiiil	chr16:28847368-28847611(+)$1	243	4	11	13.2058
IIIIIII	chr17:37009762-37010014(-)$1	252	189	196	12.6911
gggnnnn	chr7:150020569-150020829(+)$1	260	95	102	13.2794
CCC::bb	chr11:18416142-18416415(+)$1	273	10	17	16.8823
JJJJJJJ	chr14:24563576-24563826(+)$1	250	21	28	13.3529
gggg22b	chr20:19998035-19998286(+)$1	251	109	116	13.0588
cccccmm	chr17:8339412-8339669(+)$1	257	153	160	12.6911
:ffffff	chr9:135930356-135930614(+)$1	258	14	21	13.2058
fffff[b	chr1:45987295-45987544(-)$1	249	62	69	13.3529
blllbb4	chr11:72533513-72533775(+)$1	262	181	188	12.7647
HHHHHHH	chr22:36924937-36925194(-)$1	257	20	27	12.6176
gggammm	chr14:104145831-104146092(+)$1	261	89	96	12.7647
=======	chr2:9770836-9771120(-)$1	284	275	282	16.8823
ddddccc	chr5:73935956-73936171(-)$1	215	56	63	13.2058
eeeee22	chr19:18668653-18668973(+)$1	320	156	163	16.8823
cc####h	chr2:163200709-163200979(+)$1	270	124	131	16.8823
HHCCCA}	chr1:226496637-226496884(-)$1	247	225	232	13.2794
:gggggg	chr21:45507700-45507977(+)$1	277	1	8	13.2058
22fffff	chr8:48920954-48921219(+)$1	265	143	150	12.5441
[bbmmmm	chr1:193028837-193029097(+)$1	260	110	117	13.2058
===]acc	chr5:138629412-138629679(+)$1	267	200	207	12.6911
2eeeeeb	chr20:55926404-55926687(+)$1	283	77	84	13.0588
eeee!!e	chr19:1422321-1422576(+)$1	255	65	72	13.0588
dddd[dd	chr9:33025278-33025552(+)$1	274	113	120	12.1029
d::::CC	chr3:5229939-5230192(+)$1	253	67	74	16.8823
:EEEEE:	chr20:44441403-44441646(+)$1	243	110	117	12.6176
[bbbb[a	chr6:74230519-74230780(-)$1	261	135	142	13.3529
eee]ddd	chr3:184081019-184081291(+)$1	272	140	147	13.2794
ccc[a[c	chr14:78227256-78227525(-)$1	269	212	219	13.2794
BEEEEEd	chr2:182757286-182757556(+)$1	270	119	126	12.1029

#DB
)))))).	chr12:125398990-125399203(-)$1	1	109	116	13.2794
))..)))	chr17:4800039-4800289(+)$1	1	123	130	13.3529
(((((((	chr2:233415370-233415680(+)$1	1	101	108	16.8823
))).((.	chr2:242168054-242168299(+)$1	1	149	156	12.7647
))...))	chr19:35991261-35991514(-)$1	1	133	140	12.6911
..(((((	chr15:75198735-75199000(-)$1	1	3	10	12.4705
)))))..	chr20:62331782-62332015(-)$1	1	103	110	12.6176
((.....	chr20:3748126-3748381(-)$1	1	13	20	13.2794
(((((.(	chr12:107168551-107168822(+)$1	1	68	75	13.0588
.((((((	chr17:79650377-79650642(-)$1	1	58	65	16.8823
.......	chr19:39125684-39125937(+)$1	1	226	233	12.6911
))))))(	chr2:130938858-130939165(-)$1	1	119	126	13.3529
(((((((	chr5:133340162-133340409(-)$1	1	27	34	16.8823
......(	chr1:33478626-33478881(-)$1	1	22	29	12.4705
)))((((	chr17:74732713-74732977(-)$1	1	15	22	12.6911
((.((((	chr11:61595999-61596241(+)$1	1	18	25	12.4705
(((((((	chr17:36904258-36904522(-)$1	1	2	9	12.6911
))))...	chr3:31705364-31705652(-)$1	1	160	167	12.7647
))..)))	chr16:66864539-66864852(-)$1	1	254	261	12.6911
)))))((	chr20:62331815-62332026(-)$1	1	114	121	12.6176
((((((.	chr8:38644623-38644919(+)$1	1	32	39	16.8823
(((((.(	chr18:47018513-47018766(-)$1	1	22	29	16.8823
(.....(	chr1:1019547-1019802(-)$1	1	50	57	12.6176
(.(((((	chr17:39942649-39942911(-)$1	1	37	44	12.6176
((((.((	chr3:10362382-10362617(-)$1	1	24	31	13.0588
)))))).	chr12:125398932-125399190(-)$1	1	96	103	13.2794
(((((((	chr20:19998024-19998235(+)$1	1	120	127	13.0588
((((.(.	chr17:79651061-79651307(+)$1	1	0	7	12.5441
(((((((	chr5:73935997-73936202(-)$1	1	87	94	13.2058
(((((((	chr5:177631659-177631951(+)$1	1	56	63	13.0588
((....)	chr17:80441571-80441844(+)$1	1	215	222	13.3529
)))))))	chr1:146714422-146714697(+)$1	1	233	240	16.8823
...))))	chr1:21112959-21113212(-)$1	1	38	45	16.8823
.(.((((	chr1:162336931-162337186(+)$1	1	7	14	13.2794
))).)))	chr3:184080984-184081219(+)$1	1	175	182	13.2794
(..(((.	chr14:103800511-103800774(+)$1	1	106	113	12.5441
))..)))	chr9:86595741-86596053(+)$1	1	134	141	13.2058
(((((((	chr5:73935971-73936197(-)$1	1	82	89	13.2058
((((((.	chr16:28847368-28847611(+)$1	1	4	11	13.2058
)))))))	chr17:37009762-37010014(-)$1	1	189	196	12.6911
(((....	chr7:150020569-150020829(+)$1	1	95	102	13.2794
(((..((	chr11:18416142-18416415(+)$1	1	10	17	16.8823
(((((((	chr14:24563576-24563826(+)$1	1	21	28	13.3529
))))..)	chr20:19998035-19998286(+)$1	1	109	116	13.0588
(((((..	chr17:8339412-8339669(+)$1	1	153	160	12.6911
.((((((	chr9:135930356-135930614(+)$1	1	14	21	13.2058
(((((.(	chr1:45987295-45987544(-)$1	1	62	69	13.3529
(...)).	chr11:72533513-72533775(+)$1	1	181	188	12.7647
(((((((	chr22:36924937-36925194(-)$1	1	20	27	12.6176
((((...	chr14:104145831-104146092(+)$1	1	89	96	12.7647
)))))))	chr2:9770836-9771120(-)$1	1	275	282	16.8823
(((((((	chr5:73935956-73936171(-)$1	1	56	63	13.2058
)))))..	chr19:18668653-18668973(+)$1	1	156	163	16.8823
((....(	chr2:163200709-163200979(+)$1	1	124	131	16.8823
)))))).	chr1:226496637-226496884(-)$1	1	225	232	13.2794
.((((((	chr21:45507700-45507977(+)$1	1	1	8	13.2058
..)))))	chr8:48920954-48921219(+)$1	1	143	150	12.5441
.((....	chr1:193028837-193029097(+)$1	1	110	117	13.2058
))).)))	chr5:138629412-138629679(+)$1	1	200	207	12.6911
.)))))(	chr20:55926404-55926687(+)$1	1	77	84	13.0588
((((..(	chr19:1422321-1422576(+)$1	1	65	72	13.0588
((((.((	chr9:33025278-33025552(+)$1	1	113	120	12.1029
)....((	chr3:5229939-5230192(+)$1	1	67	74	16.8823
.))))).	chr20:44441403-44441646(+)$1	1	110	117	12.6176
.((((.(	chr6:74230519-74230780(-)$1	1	135	142	13.3529
))).)))	chr3:184081019-184081291(+)$1	1	140	147	13.2794
(((.(.(	chr14:78227256-78227525(-)$1	1	212	219	13.2794
(((((((	chr2:182757286-182757556(+)$1	1	119	126	12.1029

#PSSM
G : 0.82	g : 0.08	C : 0.05	A : 0.02	
C : 0.77	G : 0.10	c : 0.08	a : 0.01	U : 0.01	
C : 0.79	c : 0.10	U : 0.05	G : 0.02	A : 0.01	
C : 0.74	G : 0.13	c : 0.10	A : 0.01	
C : 0.86	c : 0.10	U : 0.01	G : 0.01	
C : 0.69	c : 0.10	U : 0.08	G : 0.05	A : 0.05	
G : 0.79	g : 0.08	A : 0.05	C : 0.02	c : 0.01	U : 0.01	

#score	926.8235294117641
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_transcript_m1_run2.nuc.txt

#NT
AAGA	chr11:122930726-122930964(-)$1	238	52	56	12.0000
AAGA	chr5:70806179-70806523(+)$1	344	14	18	12.0000
AAGA	chr5:6605270-6605539(-)$1	269	82	86	12.0000
AAGA	chr1:242021815-242022070(+)$1	255	1	5	12.0000
AAGA	chr2:47388761-47388966(-)$1	205	42	46	12.0000
AAGA	chr12:112509590-112509854(-)$1	264	39	43	12.0000
AAGA	chr12:6711473-6711740(-)$1	267	83	87	12.0000
AAGA	chr17:1268060-1268283(-)$1	223	14	18	12.0000
aaga	chr4:31999285-31999551(+)$1	266	48	52	12.0000
AAGA	chr12:133365639-133365866(-)$1	227	27	31	12.0000
AAGA	chr3:15094005-15094231(-)$1	226	105	109	12.0000
AAGA	chr11:5290928-5291134(-)$1	206	65	69	12.0000
AAGA	chr13:46553847-46554134(-)$1	287	8	12	12.0000
AAGA	chr1:186329390-186329596(-)$1	206	115	119	12.0000
AAGA	chr1:24973157-24973374(+)$1	217	50	54	12.0000
AAGA	chr3:47125106-47125368(-)$1	262	10	14	12.0000
AAGA	chr1:182821270-182821499(+)$1	229	33	37	12.0000
AAGA	chr3:49069990-49070287(-)$1	297	94	98	12.0000
AAGA	chr10:91498653-91498938(+)$1	285	66	70	12.0000
AAGA	chr13:107211749-107211986(-)$1	237	16	20	12.0000
AAGA	chr5:132227903-132228197(-)$1	294	29	33	12.0000
AAGA	chr3:47742719-47742932(-)$1	213	75	79	12.0000
AAGA	chr3:183860500-183860774(+)$1	274	71	75	12.0000
AAGA	chr12:133254124-133254406(-)$1	282	133	137	12.0000
AAGA	chr16:30723191-30723494(+)$1	303	15	19	12.0000
aaga	chr17:7788088-7788377(+)$1	289	97	101	12.0000
AAGA	chr7:91645345-91645612(+)$1	267	158	162	12.0000
AAGA	chr6:146240400-146240720(-)$1	320	5	9	12.0000
AAGA	chr2:232322271-232322496(-)$1	225	4	8	12.0000
AAGA	chr1:67895698-67895949(-)$1	251	74	78	12.0000
AAGA	chr21:40610309-40610606(-)$1	297	78	82	12.0000
AAGA	chr15:101814570-101814802(-)$1	232	44	48	12.0000
AAGA	chr17:1563969-1564223(-)$1	254	139	143	12.0000
AAGA	chr10:129903120-129903452(-)$1	332	66	70	12.0000
AAGA	chrX:39923615-39923953(-)$1	338	155	159	12.0000
AAGA	chr15:29393743-29394087(+)$1	344	199	203	12.0000
AAGA	chr1:24021055-24021272(+)$1	217	54	58	12.0000
AAGA	chr15:91020865-91021144(+)$1	279	51	55	12.0000
AAGA	chr20:47858522-47858839(+)$1	317	157	161	12.0000
AAGA	chr15:69080017-69080291(-)$1	274	37	41	12.0000
AAGA	chr14:102498509-102498720(+)$1	211	113	117	12.0000
AAGA	chr9:125922544-125922835(-)$1	291	28	32	12.0000
AAGA	chr10:70545803-70546029(+)$1	226	101	105	12.0000
AAGA	chr11:65822907-65823156(+)$1	249	16	20	12.0000
AAGA	chr12:70739858-70740210(+)$1	352	127	131	12.0000
AAGA	chr5:140032514-140032758(+)$1	244	70	74	12.0000
AAGA	chr7:105148474-105148850(-)$1	376	21	25	12.0000
AAGA	chr16:18861528-18861837(-)$1	309	52	56	12.0000
AAGA	chr8:42259205-42259439(+)$1	234	49	53	12.0000
AAGA	chr19:5705749-5705999(-)$1	250	5	9	12.0000
AAGA	chr2:219423125-219423484(-)$1	359	100	104	12.0000
AAGA	chr20:57566853-57567133(+)$1	280	1	5	12.0000
AAGA	chr20:49197710-49197958(+)$1	248	99	103	12.0000
AAGA	chr2:96964017-96964240(-)$1	223	144	148	12.0000
AAGA	chr20:33095399-33095711(+)$1	312	128	132	12.0000
AAGA	chr21:47692374-47692652(-)$1	278	29	33	12.0000
AAGA	chr10:17275573-17275782(+)$1	209	70	74	12.0000
AAGA	chr4:140297445-140297664(+)$1	219	29	33	12.0000
AAGA	chr10:12070930-12071194(-)$1	264	60	64	12.0000
AAGA	chr11:10796652-10796920(+)$1	268	4	8	12.0000
AAGA	chr1:155823339-155823617(-)$1	278	58	62	12.0000
AAGA	chr4:152024148-152024429(+)$1	281	15	19	12.0000
AAGA	chr5:139838749-139839039(+)$1	290	23	27	12.0000
AAGA	chr4:2883613-2883887(+)$1	274	21	25	12.0000
AAGA	chr1:247365222-247365489(-)$1	267	71	75	12.0000
AAGA	chr7:105176944-105177237(+)$1	293	192	196	12.0000
AAGA	chr5:140956986-140957225(-)$1	239	186	190	12.0000
AAGA	chr12:76443434-76443640(-)$1	206	82	86	12.0000
AAGA	chr12:49233548-49233793(-)$1	245	134	138	12.0000
AAGA	chr11:14497308-14497558(-)$1	250	7	11	12.0000
AAGA	chr11:126145859-126146255(+)$1	396	97	101	12.0000
AAGA	chr17:26911068-26911313(-)$1	245	54	58	12.0000
AAGA	chr1:160209962-160210237(-)$1	275	116	120	12.0000
AAGA	chr6:147631132-147631431(+)$1	299	32	36	12.0000
AAGA	chr5:98233981-98234232(-)$1	251	23	27	12.0000
AAGA	chr6:168281080-168281296(+)$1	216	9	13	12.0000
AAGA	chr6:7182192-7182415(+)$1	223	214	218	12.0000
AAGA	chr3:194373376-194373666(-)$1	290	3	7	12.0000
AAGA	chr17:40133849-40134127(-)$1	278	146	150	12.0000
AAGA	chr16:67263374-67263644(-)$1	270	37	41	12.0000
AAGA	chr2:162226516-162226763(+)$1	247	196	200	12.0000
AAGA	chr7:158448811-158449074(-)$1	263	48	52	12.0000
AAGA	chr16:28855962-28856248(-)$1	286	9	13	12.0000
aaga	chr9:100777618-100777869(+)$1	251	33	37	12.0000
AAGA	chr10:1061592-1061794(+)$1	202	120	124	12.0000
AAGA	chrX:53438972-53439246(-)$1	274	116	120	12.0000
AAGA	chr16:29828443-29828706(+)$1	263	179	183	12.0000
AAGA	chr10:70546202-70546432(+)$1	230	104	108	12.0000
AAGA	chr17:7480272-7480506(+)$1	234	115	119	12.0000
AAGA	chr5:148904599-148904834(-)$1	235	17	21	12.0000
AAGA	chr15:91504528-91504788(+)$1	260	62	66	12.0000

#otherMatches

#Struct PSSM
:fff	chr6:76602144-76602469(+)$1	325	65	69	12.0000
33gg	chr11:122930726-122930964(-)$1	238	52	56	12.0000
::::	chr5:70806179-70806523(+)$1	344	14	18	12.0000
::::	chr5:6605270-6605539(-)$1	269	82	86	12.0000
::::	chr1:242021815-242022070(+)$1	255	1	5	12.0000
GGGG	chr2:47388761-47388966(-)$1	205	42	46	12.0000
d"""	chr12:112509590-112509854(-)$1	264	39	43	12.0000
::::	chr12:6711473-6711740(-)$1	267	83	87	12.0000
oooo	chr17:1268060-1268283(-)$1	223	14	18	12.0000
ssss	chr4:31999285-31999551(+)$1	266	48	52	12.0000
::::	chr12:133365639-133365866(-)$1	227	27	31	12.0000
::CC	chr3:15094005-15094231(-)$1	226	105	109	12.0000
cppp	chr11:5290928-5291134(-)$1	206	65	69	12.0000
####	chr13:46553847-46554134(-)$1	287	8	12	12.0000
!bb"	chr1:186329390-186329596(-)$1	206	115	119	12.0000
::::	chr1:24973157-24973374(+)$1	217	50	54	12.0000
IIII	chr3:47125106-47125368(-)$1	262	10	14	12.0000
ggg:	chr1:182821270-182821499(+)$1	229	33	37	12.0000
eeee	chr3:49069990-49070287(-)$1	297	94	98	12.0000
:ddd	chr10:91498653-91498938(+)$1	285	66	70	12.0000
ssss	chr13:107211749-107211986(-)$1	237	16	20	12.0000
gg::	chr5:132227903-132228197(-)$1	294	29	33	12.0000
ccc2	chr3:47742719-47742932(-)$1	213	75	79	12.0000
>>>>	chr3:183860500-183860774(+)$1	274	71	75	12.0000
:eee	chr12:133254124-133254406(-)$1	282	133	137	12.0000
zzzz	chr16:30723191-30723494(+)$1	303	15	19	12.0000
c:::	chr17:7788088-7788377(+)$1	289	97	101	12.0000
]bb:	chr7:91645345-91645612(+)$1	267	158	162	12.0000
ffff	chr6:146240400-146240720(-)$1	320	5	9	12.0000
::::	chr2:232322271-232322496(-)$1	225	4	8	12.0000
::::	chr1:67895698-67895949(-)$1	251	74	78	12.0000
uuuu	chr21:40610309-40610606(-)$1	297	78	82	12.0000
dddd	chr15:101814570-101814802(-)$1	232	44	48	12.0000
DD::	chr17:1563969-1564223(-)$1	254	139	143	12.0000
FF::	chr10:129903120-129903452(-)$1	332	66	70	12.0000
fff!	chrX:39923615-39923953(-)$1	338	155	159	12.0000
d[bb	chr15:29393743-29394087(+)$1	344	199	203	12.0000
!!gg	chr1:24021055-24021272(+)$1	217	54	58	12.0000
ffff	chr15:91020865-91021144(+)$1	279	51	55	12.0000
dppp	chr20:47858522-47858839(+)$1	317	157	161	12.0000
vvvv	chr15:69080017-69080291(-)$1	274	37	41	12.0000
::::	chr14:102498509-102498720(+)$1	211	113	117	12.0000
c:::	chr9:125922544-125922835(-)$1	291	28	32	12.0000
KCCC	chr10:70545803-70546029(+)$1	226	101	105	12.0000
CCAK	chr11:65822907-65823156(+)$1	249	16	20	12.0000
::::	chr12:70739858-70740210(+)$1	352	127	131	12.0000
b]bb	chr5:140032514-140032758(+)$1	244	70	74	12.0000
c[ee	chr7:105148474-105148850(-)$1	376	21	25	12.0000
QQQQ	chr16:18861528-18861837(-)$1	309	52	56	12.0000
FFF{	chr8:42259205-42259439(+)$1	234	49	53	12.0000
B{DD	chr19:5705749-5705999(-)$1	250	5	9	12.0000
llff	chr2:219423125-219423484(-)$1	359	100	104	12.0000
:::H	chr20:57566853-57567133(+)$1	280	1	5	12.0000
f777	chr20:49197710-49197958(+)$1	248	99	103	12.0000
e:::	chr2:96964017-96964240(-)$1	223	144	148	12.0000
7ggg	chr20:33095399-33095711(+)$1	312	128	132	12.0000
oooe	chr21:47692374-47692652(-)$1	278	29	33	12.0000
JJJJ	chr10:17275573-17275782(+)$1	209	70	74	12.0000
dd&&	chr4:140297445-140297664(+)$1	219	29	33	12.0000
22a]	chr10:12070930-12071194(-)$1	264	60	64	12.0000
::::	chr11:10796652-10796920(+)$1	268	4	8	12.0000
evvv	chr1:155823339-155823617(-)$1	278	58	62	12.0000
%%%%	chr4:152024148-152024429(+)$1	281	15	19	12.0000
gggg	chr5:139838749-139839039(+)$1	290	23	27	12.0000
####	chr4:2883613-2883887(+)$1	274	21	25	12.0000
:HHH	chr1:247365222-247365489(-)$1	267	71	75	12.0000
5555	chr7:105176944-105177237(+)$1	293	192	196	12.0000
fff]	chr5:140956986-140957225(-)$1	239	186	190	12.0000
]fff	chr12:76443434-76443640(-)$1	206	82	86	12.0000
qqqq	chr12:49233548-49233793(-)$1	245	134	138	12.0000
::::	chr11:14497308-14497558(-)$1	250	7	11	12.0000
qqqq	chr11:126145859-126146255(+)$1	396	97	101	12.0000
z===	chr17:26911068-26911313(-)$1	245	54	58	12.0000
:JJJ	chr1:160209962-160210237(-)$1	275	116	120	12.0000
dddd	chr6:147631132-147631431(+)$1	299	32	36	12.0000
###f	chr5:98233981-98234232(-)$1	251	23	27	12.0000
c[a[	chr6:168281080-168281296(+)$1	216	9	13	12.0000
::::	chr6:7182192-7182415(+)$1	223	214	218	12.0000
::::	chr3:194373376-194373666(-)$1	290	3	7	12.0000
ffff	chr17:40133849-40134127(-)$1	278	146	150	12.0000
""cc	chr16:67263374-67263644(-)$1	270	37	41	12.0000
::::	chr2:162226516-162226763(+)$1	247	196	200	12.0000
::GG	chr7:158448811-158449074(-)$1	263	48	52	12.0000
eddd	chr16:28855962-28856248(-)$1	286	9	13	12.0000
NNNN	chr9:100777618-100777869(+)$1	251	33	37	12.0000
::::	chr10:1061592-1061794(+)$1	202	120	124	12.0000
::::	chrX:53438972-53439246(-)$1	274	116	120	12.0000
nnnn	chr16:29828443-29828706(+)$1	263	179	183	12.0000
gggg	chr10:70546202-70546432(+)$1	230	104	108	12.0000
qqqq	chr17:7480272-7480506(+)$1	234	115	119	12.0000
eeee	chr5:148904599-148904834(-)$1	235	17	21	12.0000
:DDD	chr15:91504528-91504788(+)$1	260	62	66	12.0000

#DB
.(((	chr6:76602144-76602469(+)$1	1	65	69	12.0000
..))	chr11:122930726-122930964(-)$1	1	52	56	12.0000
....	chr5:70806179-70806523(+)$1	1	14	18	12.0000
....	chr5:6605270-6605539(-)$1	1	82	86	12.0000
....	chr1:242021815-242022070(+)$1	1	1	5	12.0000
((((	chr2:47388761-47388966(-)$1	1	42	46	12.0000
(...	chr12:112509590-112509854(-)$1	1	39	43	12.0000
....	chr12:6711473-6711740(-)$1	1	83	87	12.0000
....	chr17:1268060-1268283(-)$1	1	14	18	12.0000
....	chr4:31999285-31999551(+)$1	1	48	52	12.0000
....	chr12:133365639-133365866(-)$1	1	27	31	12.0000
..))	chr3:15094005-15094231(-)$1	1	105	109	12.0000
(...	chr11:5290928-5291134(-)$1	1	65	69	12.0000
....	chr13:46553847-46554134(-)$1	1	8	12	12.0000
.((.	chr1:186329390-186329596(-)$1	1	115	119	12.0000
....	chr1:24973157-24973374(+)$1	1	50	54	12.0000
((((	chr3:47125106-47125368(-)$1	1	10	14	12.0000
))).	chr1:182821270-182821499(+)$1	1	33	37	12.0000
((((	chr3:49069990-49070287(-)$1	1	94	98	12.0000
.(((	chr10:91498653-91498938(+)$1	1	66	70	12.0000
....	chr13:107211749-107211986(-)$1	1	16	20	12.0000
))..	chr5:132227903-132228197(-)$1	1	29	33	12.0000
))).	chr3:47742719-47742932(-)$1	1	75	79	12.0000
....	chr3:183860500-183860774(+)$1	1	71	75	12.0000
.(((	chr12:133254124-133254406(-)$1	1	133	137	12.0000
....	chr16:30723191-30723494(+)$1	1	15	19	12.0000
)...	chr17:7788088-7788377(+)$1	1	97	101	12.0000
.)).	chr7:91645345-91645612(+)$1	1	158	162	12.0000
((((	chr6:146240400-146240720(-)$1	1	5	9	12.0000
....	chr2:232322271-232322496(-)$1	1	4	8	12.0000
....	chr1:67895698-67895949(-)$1	1	74	78	12.0000
....	chr21:40610309-40610606(-)$1	1	78	82	12.0000
((((	chr15:101814570-101814802(-)$1	1	44	48	12.0000
((..	chr17:1563969-1564223(-)$1	1	139	143	12.0000
((..	chr10:129903120-129903452(-)$1	1	66	70	12.0000
(((.	chrX:39923615-39923953(-)$1	1	155	159	12.0000
(.((	chr15:29393743-29394087(+)$1	1	199	203	12.0000
..((	chr1:24021055-24021272(+)$1	1	54	58	12.0000
((((	chr15:91020865-91021144(+)$1	1	51	55	12.0000
(...	chr20:47858522-47858839(+)$1	1	157	161	12.0000
....	chr15:69080017-69080291(-)$1	1	37	41	12.0000
....	chr14:102498509-102498720(+)$1	1	113	117	12.0000
)...	chr9:125922544-125922835(-)$1	1	28	32	12.0000
.(((	chr10:70545803-70546029(+)$1	1	101	105	12.0000
(((.	chr11:65822907-65823156(+)$1	1	16	20	12.0000
....	chr12:70739858-70740210(+)$1	1	127	131	12.0000
).))	chr5:140032514-140032758(+)$1	1	70	74	12.0000
(.((	chr7:105148474-105148850(-)$1	1	21	25	12.0000
....	chr16:18861528-18861837(-)$1	1	52	56	12.0000
(((.	chr8:42259205-42259439(+)$1	1	49	53	12.0000
(.((	chr19:5705749-5705999(-)$1	1	5	9	12.0000
..))	chr2:219423125-219423484(-)$1	1	100	104	12.0000
...(	chr20:57566853-57567133(+)$1	1	1	5	12.0000
)...	chr20:49197710-49197958(+)$1	1	99	103	12.0000
)...	chr2:96964017-96964240(-)$1	1	144	148	12.0000
.)))	chr20:33095399-33095711(+)$1	1	128	132	12.0000
...)	chr21:47692374-47692652(-)$1	1	29	33	12.0000
((((	chr10:17275573-17275782(+)$1	1	70	74	12.0000
((..	chr4:140297445-140297664(+)$1	1	29	33	12.0000
..).	chr10:12070930-12071194(-)$1	1	60	64	12.0000
....	chr11:10796652-10796920(+)$1	1	4	8	12.0000
(...	chr1:155823339-155823617(-)$1	1	58	62	12.0000
....	chr4:152024148-152024429(+)$1	1	15	19	12.0000
((((	chr5:139838749-139839039(+)$1	1	23	27	12.0000
....	chr4:2883613-2883887(+)$1	1	21	25	12.0000
.(((	chr1:247365222-247365489(-)$1	1	71	75	12.0000
....	chr7:105176944-105177237(+)$1	1	192	196	12.0000
))).	chr5:140956986-140957225(-)$1	1	186	190	12.0000
.)))	chr12:76443434-76443640(-)$1	1	82	86	12.0000
....	chr12:49233548-49233793(-)$1	1	134	138	12.0000
....	chr11:14497308-14497558(-)$1	1	7	11	12.0000
....	chr11:126145859-126146255(+)$1	1	97	101	12.0000
.)))	chr17:26911068-26911313(-)$1	1	54	58	12.0000
.)))	chr1:160209962-160210237(-)$1	1	116	120	12.0000
((((	chr6:147631132-147631431(+)$1	1	32	36	12.0000
...(	chr5:98233981-98234232(-)$1	1	23	27	12.0000
(.(.	chr6:168281080-168281296(+)$1	1	9	13	12.0000
....	chr6:7182192-7182415(+)$1	1	214	218	12.0000
....	chr3:194373376-194373666(-)$1	1	3	7	12.0000
))))	chr17:40133849-40134127(-)$1	1	146	150	12.0000
..((	chr16:67263374-67263644(-)$1	1	37	41	12.0000
....	chr2:162226516-162226763(+)$1	1	196	200	12.0000
..((	chr7:158448811-158449074(-)$1	1	48	52	12.0000
((((	chr16:28855962-28856248(-)$1	1	9	13	12.0000
....	chr9:100777618-100777869(+)$1	1	33	37	12.0000
....	chr10:1061592-1061794(+)$1	1	120	124	12.0000
....	chrX:53438972-53439246(-)$1	1	116	120	12.0000
....	chr16:29828443-29828706(+)$1	1	179	183	12.0000
))))	chr10:70546202-70546432(+)$1	1	104	108	12.0000
....	chr17:7480272-7480506(+)$1	1	115	119	12.0000
((((	chr5:148904599-148904834(-)$1	1	17	21	12.0000
.(((	chr15:91504528-91504788(+)$1	1	62	66	12.0000

#PSSM
A : 0.96	a : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	

#score	1104.0000000000007
#seq	92
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_UTR_m3_run1.nuc.txt

#NT
guagcugggacuacaggcgcaugccaccacgcccg	chr7:48003353-48003605(-)$1	252	212	247	70.8333
guagcugggauuacagaugugagccaccguaccca	chr19:48984694-48984931(+)$1	237	202	237	58.8333
guagcggggauuacaggcacgcgcugccacgcccc	chr7:7284762-7285021(+)$1	259	173	208	57.6666
guagcugagaccacaggcacccgccaccacaccca	chr3:196557672-196557926(+)$1	254	212	247	60.4999
guagcugggacuacaggcaugugccaccacaccug	chr14:21928598-21928850(-)$1	252	216	251	71.4999
guaacugggacuacaggugcacgcugccaugccca	chr22:41324116-41324375(+)$1	259	221	256	54.3333
guagcugggacuacaggugcacaccaccgugccca	chr9:94056682-94056936(-)$1	254	216	251	60.6666
guagcugggacuacaggugugugccaccacgccca	chr4:38945625-38945853(+)$1	228	191	226	71.3333
guagcugggauuacaggcguguaccaccacgccug	chr20:39987683-39987947(+)$1	264	219	254	70.8333
guggcugggaucacaggcaugugccaccacgccca	chr12:125610417-125610674(+)$1	257	213	248	64.8333
agugcugggguugcaggccugagccaccacgcccg	chr19:50376913-50377166(-)$1	253	162	197	48.1666
guagcugggacuacaggcacacaccacaacaccug	chr4:1380585-1380836(+)$1	251	47	82	62.4999
guagcugggauuacaggcaugcgccaccaugccca	chr19:37035966-37036222(-)$1	256	210	245	71.3333
guaccugggacuacaggcaugcaccaccacgcccg	chr1:245007914-245008169(-)$1	255	219	254	67.1666
aguggugggauuacaggcaugagccaccaugcucg	chr5:42801524-42801787(-)$1	263	13	48	49.1666
guagcugggauuauaggcucccgccaccacaucug	chr17:30701007-30701237(+)$1	230	35	70	57.9999
guagcugggacuacaggcgugcaccuccacaccua	chr1:21101332-21101587(-)$1	255	220	255	64.6666
guagcugggacuacaggugugugccaccacaccug	chr10:69828093-69828334(-)$1	241	200	235	70.3333
guagcuggaaauacagguaugcaccaccacaacug	chr19:58372797-58373060(+)$1	263	28	63	56.9999
cuagcugggacuacaggcgcccgccacaugcccgg	chr14:23444908-23445138(-)$1	230	177	212	49.9999
guagcugggaccacagaagcgugccaccacaccca	chr17:80214237-80214490(-)$1	253	211	246	60.4999
guaccugggauuacaggcacgcaccaccacgccca	chr11:61133853-61134110(+)$1	257	213	248	66.1666
guagcugggauuacaggugcccgccaccaugccug	chr12:123741917-123742176(-)$1	259	223	258	67.4999
guagcugggauuacaggugcgugccaccacacuca	chr20:43560099-43560339(+)$1	240	163	198	65.6666
gucguugggacuacaggcacgugccaccacgccug	chr16:1830644-1830906(+)$1	262	216	251	63.9999
guagcuggaauuacaugugcaugccaccaagccca	chr6:31725362-31725621(+)$1	259	211	246	56.8333
guaguugggacuacacuuaugugccaccaugccug	chr10:69828134-69828346(-)$1	212	39	74	56.4999
guagcugggauuacaggcgugcgccacuaugccag	chr12:133348981-133349216(-)$1	235	196	231	65.6666
guagcugggauuacaggcaucugccaccacaccug	chr6:24173050-24173316(-)$1	266	203	238	69.1666

#otherMatches

#Struct PSSM
dddd22hhhhhhhhhhhhhhhhmmmmhhhhhhhhD	chr2:3520092-3520338(-)$1	246	195	230	63.6666
Chhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr7:48003353-48003605(-)$1	252	212	247	70.8333
qqggggggg::::DDDD}CCC}BB:::::::::::	chr19:48984694-48984931(+)$1	237	202	237	58.8333
nnnnddddbb!!bb[ccc!!cccooooooccc333	chr7:7284762-7285021(+)$1	259	173	208	57.6666
effffff[a%%%%%%cccmmmmccc666666a]ff	chr3:196557672-196557926(+)$1	254	212	247	60.4999
c]bb]dddd::::dddd!!ddddmmmmdddddddd	chr14:21928598-21928850(-)$1	252	216	251	71.4999
ooooodddd::CCC}EEEEE::ddddpppppppdd	chr22:41324116-41324375(+)$1	259	221	256	54.3333
::ggggggg[a[bb[ddddnnnnnddddbbagggg	chr9:94056682-94056936(-)$1	254	216	251	60.6666
e::ffffff%%%%%%ddddnnnnndddd333ffff	chr4:38945625-38945853(+)$1	228	191	226	71.3333
oooooeeeee:::hhhhhhhhoooooohhhhhhhh	chr20:39987683-39987947(+)$1	264	219	254	70.8333
:hhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr12:125610417-125610674(+)$1	257	213	248	64.8333
bb]ffffff333ffffff22bb22dddd22fffff	chr19:50376913-50377166(-)$1	253	162	197	48.1666
mmmmffffff55555ccc:::::cccpppppppcc	chr4:1380585-1380836(+)$1	251	47	82	62.4999
[hhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr19:37035966-37036222(-)$1	256	210	245	71.3333
dd]bbeeeee:::a[ccc[bboooooobb]ccc]a	chr1:245007914-245008169(-)$1	255	219	254	67.1666
neeeee]bb::::::ccc[eeeeeooooooeeeee	chr5:42801524-42801787(-)$1	263	13	48	49.1666
=========%%%%%%cccmmmmccc666666====	chr17:30701007-30701237(+)$1	230	35	70	57.9999
::A}EEEEEZZZEEEEE}CCCZZZEEEEE::::::	chr1:21101332-21101587(-)$1	255	220	255	64.6666
a22hhhhhhhh::hhhhhhhhoooooohhhhhhhh	chr10:69828093-69828334(-)$1	241	200	235	70.3333
nnnneeeee55555dddd22ccc::::::BBEEEE	chr19:58372797-58373060(+)$1	263	28	63	56.9999
:hhhhhhhh[a####cccmmmmccc4444ahhhhh	chr14:23444908-23445138(-)$1	230	177	212	49.9999
a22eeeeeFFFFFFEEEEE:cccooooooccc:::	chr17:80214237-80214490(-)$1	253	211	246	60.4999
e55555ffffff:A}FFFFFF~~~~BBBB}CCC::	chr11:61133853-61134110(+)$1	257	213	248	66.1666
e:JJJJJJJJJJ~~~~EEEEEAYYCCCBB}FFFFF	chr12:123741917-123742176(-)$1	259	223	258	67.4999
mmmmffffff::::bb[bb[cccooooooccc]bb	chr20:43560099-43560339(+)$1	240	163	198	65.6666
ff333eeeee:::eeeee!!cccmmmmccceeeee	chr16:1830644-1830906(+)$1	262	216	251	63.9999
a22eeeee::::CCC}HHHHHHHH:::::::::::	chr6:31725362-31725621(+)$1	259	211	246	56.8333
e::HHHHHHHHffffff!!eeeee!!ccc[fffff	chr10:69828134-69828346(-)$1	212	39	74	56.4999
:eeeee[bb!!bb!!cccmmmmccc22bb22bb]e	chr12:133348981-133349216(-)$1	235	196	231	65.6666
c22bb]ccc::::DDDD}CCCFFFFFFYYIIIIII	chr6:24173050-24173316(-)$1	266	203	238	69.1666

#DB
))))..))))))))((((((((....)))))))))	chr2:3520092-3520338(-)$1	1	195	230	63.6666
)((((((((......(((....)))......))))	chr7:48003353-48003605(-)$1	1	212	247	70.8333
..)))))))....)))).))).))...........	chr19:48984694-48984931(+)$1	1	202	237	58.8333
....))))((..((.(((..(((......)))...	chr7:7284762-7285021(+)$1	1	173	208	57.6666
)((((((.(......(((....)))......).))	chr3:196557672-196557926(+)$1	1	212	247	60.4999
).)).))))....((((..((((....))))))))	chr14:21928598-21928850(-)$1	1	216	251	71.4999
.....))))..))).)))))..((((.......))	chr22:41324116-41324375(+)$1	1	221	256	54.3333
..(((((((.(.((.((((.....)))))))))))	chr9:94056682-94056936(-)$1	1	216	251	60.6666
)..((((((......((((.....))))...))))	chr4:38945625-38945853(+)$1	1	191	226	71.3333
.....)))))...((((((((......))))))))	chr20:39987683-39987947(+)$1	1	219	254	70.8333
.((((((((......(((....)))......))))	chr12:125610417-125610674(+)$1	1	213	248	64.8333
)).))))))...))))))..))..))))..)))))	chr19:50376913-50377166(-)$1	1	162	197	48.1666
....)))))).....))).....(((.......))	chr4:1380585-1380836(+)$1	1	47	82	62.4999
.((((((((......(((....)))......))))	chr19:37035966-37036222(-)$1	1	210	245	71.3333
)).)))))))...(.(((.((......)).))).)	chr1:245007914-245008169(-)$1	1	219	254	67.1666
.))))).))......(((.(((((......)))))	chr5:42801524-42801787(-)$1	1	13	48	49.1666
(((((((((......(((....)))......))))	chr17:30701007-30701237(+)$1	1	35	70	57.9999
..).)))))...))))).)))...)))))......	chr1:21101332-21101587(-)$1	1	220	255	64.6666
)..))))))))..((((((((......))))))))	chr10:69828093-69828334(-)$1	1	200	235	70.3333
....))))).....))))..)))......((((((	chr19:58372797-58373060(+)$1	1	28	63	56.9999
.((((((((.(....(((....)))....))))))	chr14:23444908-23445138(-)$1	1	177	212	49.9999
)..)))))))))))))))).(((......)))...	chr17:80214237-80214490(-)$1	1	211	246	60.4999
).....)))))).).))))))....)))).)))..	chr11:61133853-61134110(+)$1	1	213	248	66.1666
).))))))))))....))))))..))))).)))))	chr12:123741917-123742176(-)$1	1	223	258	67.4999
....))))))....((.((.(((......))).))	chr20:43560099-43560339(+)$1	1	163	198	65.6666
))...)))))...(((((..(((....))))))))	chr16:1830644-1830906(+)$1	1	216	251	63.9999
)..)))))....))).))))))))...........	chr6:31725362-31725621(+)$1	1	211	246	56.8333
)..((((((((((((((..(((((..(((.(((((	chr10:69828134-69828346(-)$1	1	39	74	56.4999
.(((((.((..((..(((....)))..))..)).)	chr12:133348981-133349216(-)$1	1	196	231	65.6666
)..)).)))....)))).)))))))))..))))))	chr6:24173050-24173316(-)$1	1	203	238	69.1666

#PSSM
g : 0.89	a : 0.06	c : 0.03	
u : 0.93	g : 0.06	
a : 0.86	u : 0.06	g : 0.03	c : 0.03	
g : 0.89	c : 0.06	a : 0.03	
c : 0.89	u : 0.06	g : 0.03	
u : 0.96	g : 0.03	
g : 0.99	
g : 0.96	a : 0.03	
g : 0.93	a : 0.06	
a : 0.96	g : 0.03	
u : 0.49	c : 0.46	a : 0.03	
u : 0.86	c : 0.13	
a : 0.96	g : 0.03	
c : 0.96	u : 0.03	
a : 0.99	
g : 0.93	u : 0.03	c : 0.03	
g : 0.89	a : 0.06	u : 0.03	
c : 0.63	u : 0.33	a : 0.03	
g : 0.49	a : 0.43	c : 0.03	u : 0.03	
u : 0.53	c : 0.46	
g : 0.66	a : 0.16	c : 0.16	
c : 0.46	u : 0.39	a : 0.10	g : 0.03	
g : 0.73	a : 0.26	
c : 0.99	
c : 0.93	u : 0.06	
a : 0.89	g : 0.06	u : 0.03	
c : 0.99	
c : 0.89	a : 0.06	u : 0.03	
a : 0.89	g : 0.06	u : 0.03	
c : 0.63	u : 0.30	g : 0.03	a : 0.03	
g : 0.60	a : 0.36	c : 0.03	
c : 0.93	u : 0.03	a : 0.03	
c : 0.93	u : 0.06	
c : 0.53	u : 0.39	g : 0.03	a : 0.03	
g : 0.56	a : 0.39	c : 0.03	

#score	1875.3333333333321
#seq	30
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_UTR_m3_run1.nuc.txt

#NT
ucucucccu	chr19:41828744-41829112(+)$1	368	149	158	20.7499
ucuuuccuu	chrX:133930304-133930683(-)$1	379	160	169	18.3636
ucucucccu	chr11:62566465-62566792(-)$1	327	189	198	20.7499
UCAUUCCCU	chr3:184034315-184034616(+)$1	301	119	128	17.4545
UCUUUCCUU	chr12:56736501-56736825(-)$1	324	123	132	18.3636
UCUUUCCCU	chr2:85546815-85547084(-)$1	269	2	11	22.2272
ucugucccu	chr19:48958124-48958415(+)$1	291	253	262	19.8409
UCUCUGCCU	chr7:92242695-92242961(-)$1	266	151	160	17.5681
UCUUUGCCU	chr20:35090668-35090947(+)$1	279	166	175	19.0454
ucuuuuccu	chr17:30808950-30809251(+)$1	301	116	125	18.9318
UCUGUCCCU	chr19:45912059-45912320(-)$1	261	85	94	19.8409
ucucucccu	chr19:4390240-4390600(-)$1	360	43	52	20.7499
UCUCUCCCU	chr7:143002961-143003256(+)$1	295	36	45	20.7499
UCUUUCCCU	chr2:85546950-85547221(-)$1	271	139	148	22.2272
CCUUUCCcu	chr6:27223462-27223740(+)$1	278	45	54	17.5681
UCUCUCUCU	chr6:43028655-43029004(+)$1	349	259	268	16.5454
UCUUUCCCU	chr2:85547021-85547343(-)$1	322	261	270	22.2272
UCUCUGCCU	chr8:103876233-103876462(-)$1	229	128	137	17.5681
ucuuuuccu	chr6:27223663-27223965(+)$1	302	292	301	18.9318
UCUUCCCCU	chr11:57585408-57585689(+)$1	281	0	9	17.4545
GCUUUCCCU	chr12:49330038-49330304(-)$1	266	106	115	17.5681
ucuuugccu	chr19:7710773-7711088(+)$1	315	68	77	19.0454
UCUUUCCCU	chr10:102122116-102122386(+)$1	270	186	195	22.2272
UCUUUGCCU	chr20:35090762-35091075(+)$1	313	72	81	19.0454
UCUUUCCUU	chr12:49330496-49330768(-)$1	272	126	135	18.3636
UCUCUCACU	chr11:66406165-66406417(+)$1	252	106	115	16.3181
UCUUUCCCU	chr19:45911945-45912205(-)$1	260	200	209	22.2272
UCUUUCCUU	chr12:49330365-49330666(-)$1	301	24	33	18.3636
ucucucccu	chr11:62566390-62566665(-)$1	275	62	71	20.7499
UCUUUCCCU	chr19:50431923-50432229(-)$1	306	146	155	22.2272
ucuuucccu	chr2:176791709-176791986(-)$1	277	214	223	22.2272
ucuuucucu	chr3:52083575-52083866(-)$1	291	83	92	18.0227
UCUUUACCU	chr7:92242778-92243089(-)$1	311	71	80	18.7045
ucucuccuu	chr11:73685737-73686027(-)$1	290	68	77	16.8863
ucuguuccu	chr15:49517299-49517556(+)$1	257	34	43	16.5454
UCUUUACCU	chr7:73110968-73111290(+)$1	322	79	88	18.7045
UCUUUCCCU	chr5:112227427-112227712(-)$1	285	151	160	22.2272
UCUUUCCCU	chr19:45911819-45912145(-)$1	326	140	149	22.2272
UCUGUCCCU	chr11:62392520-62392798(-)$1	278	161	170	19.8409
ucucucccu	chr1:28300658-28300941(-)$1	283	102	111	20.7499
ucugucccu	chr19:48958215-48958531(+)$1	316	162	171	19.8409
ucucuuccu	chr8:27316655-27316963(+)$1	308	61	70	17.4545
ucucucucu	chr16:58054299-58054580(+)$1	281	15	24	16.5454

#otherMatches

#Struct PSSM
E::::::::	chr5:112227519-112227848(-)$1	329	287	296	22.2272
$$$$$bb!!	chr19:41828744-41829112(+)$1	368	149	158	20.7499
:::::::::	chrX:133930304-133930683(-)$1	379	160	169	18.3636
:::::::::	chr11:62566465-62566792(-)$1	327	189	198	20.7499
%%%%%%fff	chr3:184034315-184034616(+)$1	301	119	128	17.4545
zzzzdddd2	chr12:56736501-56736825(-)$1	324	123	132	18.3636
::::FFFFF	chr2:85546815-85547084(-)$1	269	2	11	22.2272
333a]ccc9	chr19:48958124-48958415(+)$1	291	253	262	19.8409
:::::cccq	chr7:92242695-92242961(-)$1	266	151	160	17.5681
ooooobb::	chr20:35090668-35090947(+)$1	279	166	175	19.0454
:::::::::	chr17:30808950-30809251(+)$1	301	116	125	18.9318
:iiiiiiii	chr19:45912059-45912320(-)$1	261	85	94	19.8409
^^^^^^^^^	chr19:4390240-4390600(-)$1	360	43	52	20.7499
dd:::::::	chr7:143002961-143003256(+)$1	295	36	45	20.7499
::::ggggg	chr2:85546950-85547221(-)$1	271	139	148	22.2272
vvvvvvvvv	chr6:27223462-27223740(+)$1	278	45	54	17.5681
g4444ccc3	chr6:43028655-43029004(+)$1	349	259	268	16.5454
@@@@@@@@@	chr2:85547021-85547343(-)$1	322	261	270	22.2272
bb333dddd	chr8:103876233-103876462(-)$1	229	128	137	17.5681
:::::::::	chr6:27223663-27223965(+)$1	302	292	301	18.9318
:bb[dddd"	chr11:57585408-57585689(+)$1	281	0	9	17.4545
+++++++cc	chr12:49330038-49330304(-)$1	266	106	115	17.5681
:::::::::	chr19:7710773-7711088(+)$1	315	68	77	19.0454
bb7777777	chr10:102122116-102122386(+)$1	270	186	195	22.2272
:::::::::	chr20:35090762-35091075(+)$1	313	72	81	19.0454
sssssssss	chr12:49330496-49330768(-)$1	272	126	135	18.3636
:::::gggg	chr11:66406165-66406417(+)$1	252	106	115	16.3181
qqqqqq===	chr19:45911945-45912205(-)$1	260	200	209	22.2272
KKEEEEE::	chr12:49330365-49330666(-)$1	301	24	33	18.3636
EE:::::::	chr11:62566390-62566665(-)$1	275	62	71	20.7499
:::::::::	chr19:50431923-50432229(-)$1	306	146	155	22.2272
:::::::::	chr2:176791709-176791986(-)$1	277	214	223	22.2272
:::::::::	chr3:52083575-52083866(-)$1	291	83	92	18.0227
bmmmmbb==	chr7:92242778-92243089(-)$1	311	71	80	18.7045
:::::::::	chr11:73685737-73686027(-)$1	290	68	77	16.8863
gg####ccc	chr15:49517299-49517556(+)$1	257	34	43	16.5454
:::::::::	chr7:73110968-73111290(+)$1	322	79	88	18.7045
:::::::::	chr5:112227427-112227712(-)$1	285	151	160	22.2272
qqqqqq===	chr19:45911819-45912145(-)$1	326	140	149	22.2272
ffffffmmm	chr11:62392520-62392798(-)$1	278	161	170	19.8409
:::::::::	chr1:28300658-28300941(-)$1	283	102	111	20.7499
333a]ccc9	chr19:48958215-48958531(+)$1	316	162	171	19.8409
dd333dddd	chr8:27316655-27316963(+)$1	308	61	70	17.4545
nnbb]a]cc	chr16:58054299-58054580(+)$1	281	15	24	16.5454

#DB
)........	chr5:112227519-112227848(-)$1	1	287	296	22.2272
.....((..	chr19:41828744-41829112(+)$1	1	149	158	20.7499
.........	chrX:133930304-133930683(-)$1	1	160	169	18.3636
.........	chr11:62566465-62566792(-)$1	1	189	198	20.7499
......(((	chr3:184034315-184034616(+)$1	1	119	128	17.4545
....)))).	chr12:56736501-56736825(-)$1	1	123	132	18.3636
....(((((	chr2:85546815-85547084(-)$1	1	2	11	22.2272
...).))).	chr19:48958124-48958415(+)$1	1	253	262	19.8409
.....(((.	chr7:92242695-92242961(-)$1	1	151	160	17.5681
.....))..	chr20:35090668-35090947(+)$1	1	166	175	19.0454
.........	chr17:30808950-30809251(+)$1	1	116	125	18.9318
.((((((((	chr19:45912059-45912320(-)$1	1	85	94	19.8409
.........	chr19:4390240-4390600(-)$1	1	43	52	20.7499
)).......	chr7:143002961-143003256(+)$1	1	36	45	20.7499
....(((((	chr2:85546950-85547221(-)$1	1	139	148	22.2272
.........	chr6:27223462-27223740(+)$1	1	45	54	17.5681
)....))).	chr6:43028655-43029004(+)$1	1	259	268	16.5454
.........	chr2:85547021-85547343(-)$1	1	261	270	22.2272
))...))))	chr8:103876233-103876462(-)$1	1	128	137	17.5681
.........	chr6:27223663-27223965(+)$1	1	292	301	18.9318
.((.((((.	chr11:57585408-57585689(+)$1	1	0	9	17.4545
.......((	chr12:49330038-49330304(-)$1	1	106	115	17.5681
.........	chr19:7710773-7711088(+)$1	1	68	77	19.0454
)).......	chr10:102122116-102122386(+)$1	1	186	195	22.2272
.........	chr20:35090762-35091075(+)$1	1	72	81	19.0454
.........	chr12:49330496-49330768(-)$1	1	126	135	18.3636
.....((((	chr11:66406165-66406417(+)$1	1	106	115	16.3181
......)))	chr19:45911945-45912205(-)$1	1	200	209	22.2272
..(((((..	chr12:49330365-49330666(-)$1	1	24	33	18.3636
((.......	chr11:62566390-62566665(-)$1	1	62	71	20.7499
.........	chr19:50431923-50432229(-)$1	1	146	155	22.2272
.........	chr2:176791709-176791986(-)$1	1	214	223	22.2272
.........	chr3:52083575-52083866(-)$1	1	83	92	18.0227
(....))))	chr7:92242778-92243089(-)$1	1	71	80	18.7045
.........	chr11:73685737-73686027(-)$1	1	68	77	16.8863
((....(((	chr15:49517299-49517556(+)$1	1	34	43	16.5454
.........	chr7:73110968-73111290(+)$1	1	79	88	18.7045
.........	chr5:112227427-112227712(-)$1	1	151	160	22.2272
......)))	chr19:45911819-45912145(-)$1	1	140	149	22.2272
((((((...	chr11:62392520-62392798(-)$1	1	161	170	19.8409
.........	chr1:28300658-28300941(-)$1	1	102	111	20.7499
...).))).	chr19:48958215-48958531(+)$1	1	162	171	19.8409
))...))))	chr8:27316655-27316963(+)$1	1	61	70	17.4545
..)).).))	chr16:58054299-58054580(+)$1	1	15	24	16.5454

#PSSM
U : 0.56	u : 0.38	C : 0.02	G : 0.02	
C : 0.61	c : 0.38	
U : 0.59	u : 0.38	A : 0.02	
U : 0.45	c : 0.18	u : 0.13	C : 0.11	g : 0.06	G : 0.04	
U : 0.59	u : 0.38	C : 0.02	
C : 0.47	c : 0.27	G : 0.09	u : 0.09	A : 0.04	g : 0.02	
C : 0.56	c : 0.34	u : 0.04	U : 0.02	A : 0.02	
C : 0.52	c : 0.36	U : 0.06	u : 0.04	
U : 0.59	u : 0.40	

#score	855.5000000000001
#seq	44
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_transcript_m2_run2.nuc.txt

#NT
guagcggcuccggcggcggugguaguggcggcggcg	chr1:200378742-200378952(-)$1	210	174	210	36.1250
GGCGUGGCGCUGGGACUGGGGGUGUCGGGGGCCGGG	chr19:47290824-47291110(-)$1	286	80	116	33.6250
GCUGAgccgccggcgccucggccgccgccgccgccu	chr1:27022545-27022809(+)$1	264	107	143	39.8750
GGCGAGGAGCCGCCGCAGCCGCCGCCGCCCGAGCCG	chrX:152953588-152953898(+)$1	310	83	119	41.7500
guggaggagccggggcggcgggcggcggcggcggug	chr19:39340321-39340607(-)$1	286	230	266	58.6250
gccgaggagccgagcccgcgcccggcccgcccgccc	chr20:57466610-57466874(+)$1	264	45	81	34.8750
guggaggagccggggcggcgggcggcggcggcggug	chr19:39340237-39340490(-)$1	253	113	149	58.6250

#otherMatches

#Struct PSSM
eeeEEEEE{BB{CCCdddd[a[bbmmmmbb]a]ddd	chr19:41111295-41111612(+)$1	317	113	149	41.7500
}CCC}GGGGGGG}BBBB}BB}BB::::bbmmmmbb:	chr1:200378742-200378952(-)$1	210	174	210	36.1250
CCCGGGGGGG::BB{EEEEE{IIIIIIIII::iiii	chr19:47290824-47291110(-)$1	286	80	116	33.6250
DDDD{BB{BBeeeeeammmma]eeeee::bbccc[e	chr1:27022545-27022809(+)$1	264	107	143	39.8750
FFFFFFFFFF:bb[bbmmmmbb]bb:eeeee[bbgg	chrX:152953588-152953898(+)$1	310	83	119	41.7500
]bb22bb::JJJJJJJJJJJJ}AYYA}EEEEE::ff	chr19:39340321-39340607(-)$1	286	230	266	58.6250
cccdddd[dddd[bb!!eeeee[cccooooooccc]	chr20:57466610-57466874(+)$1	264	45	81	34.8750
dd4444eeeeeeeeee22ccc]bbbb]bb]bb]ddd	chr19:39340237-39340490(-)$1	253	113	149	58.6250

#DB
)))(((((.((.(((((((.(.((....)).).)))	chr19:41111295-41111612(+)$1	1	113	149	41.7500
.))).))))))).)))).)).))....((....)).	chr1:200378742-200378952(-)$1	1	174	210	36.1250
))))))))))..((.(((((.(((((((((..((((	chr19:47290824-47291110(-)$1	1	80	116	33.6250
((((.((.((((((((....).)))))..(((((.(	chr1:27022545-27022809(+)$1	1	107	143	39.8750
((((((((((.((.((....)).)).(((((.((((	chrX:152953588-152953898(+)$1	1	83	119	41.7500
.))..))..)))))))))))).)..).)))))..((	chr19:39340321-39340607(-)$1	1	230	266	58.6250
(((((((.((((.((..(((((.(((......))).	chr20:57466610-57466874(+)$1	1	45	81	34.8750
))....))))))))))..))).)))).)).)).)))	chr19:39340237-39340490(-)$1	1	113	149	58.6250

#PSSM
g : 0.62	G : 0.37	
u : 0.37	G : 0.25	a : 0.12	C : 0.12	c : 0.12	
c : 0.25	C : 0.25	g : 0.25	a : 0.12	U : 0.12	
g : 0.62	G : 0.37	
a : 0.37	c : 0.25	A : 0.25	U : 0.12	
g : 0.62	G : 0.25	u : 0.12	
g : 0.62	G : 0.25	c : 0.12	
a : 0.50	c : 0.25	C : 0.12	A : 0.12	
g : 0.62	G : 0.25	u : 0.12	
c : 0.62	C : 0.25	g : 0.12	
c : 0.75	U : 0.12	C : 0.12	
g : 0.75	G : 0.25	
g : 0.62	G : 0.12	C : 0.12	a : 0.12	
g : 0.37	c : 0.25	u : 0.12	G : 0.12	C : 0.12	
g : 0.62	A : 0.12	G : 0.12	c : 0.12	
c : 0.50	g : 0.25	C : 0.25	
c : 0.50	g : 0.25	U : 0.12	A : 0.12	
g : 0.62	G : 0.25	u : 0.12	
c : 0.62	g : 0.12	G : 0.12	C : 0.12	
g : 0.62	u : 0.12	G : 0.12	C : 0.12	
g : 0.62	G : 0.25	c : 0.12	
g : 0.50	c : 0.25	G : 0.12	C : 0.12	
c : 0.62	u : 0.12	U : 0.12	C : 0.12	
g : 0.62	G : 0.25	a : 0.12	
g : 0.62	U : 0.12	c : 0.12	C : 0.12	
c : 0.50	C : 0.25	a : 0.12	u : 0.12	
g : 0.50	G : 0.25	a : 0.12	c : 0.12	
g : 0.50	c : 0.25	G : 0.12	C : 0.12	
c : 0.62	G : 0.12	C : 0.12	g : 0.12	
g : 0.62	G : 0.12	C : 0.12	c : 0.12	
g : 0.50	G : 0.25	c : 0.25	
c : 0.75	C : 0.12	A : 0.12	
g : 0.75	C : 0.12	G : 0.12	
g : 0.50	c : 0.25	G : 0.12	C : 0.12	
c : 0.50	u : 0.25	G : 0.12	C : 0.12	
g : 0.50	G : 0.25	u : 0.12	c : 0.12	

#score	345.25
#seq	8
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456SOS_UTP18_CDS_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
DDKKCCC:::dddd[bbbb!!bblllbb22bb]bb]dddd:a[ggggggg[bb!!bb[dddd[ddddpppppppdddd]dddd]bb22bbggggggg]a::::CCCZZZDDDD}EEEEEFFFFFF{CCCBB{A{EEEEE{IIIIIIIIIddddpppppppdddd:hhhhhhhheeeeecccqqqqqqqqccc22eeeee22hhhhhhhh::::IIIIIIIII}EEEEE}A}BB	chr1:205718999-205719270(-)$1	271	10	243	699.0000

#DB
((..(((...((((.((((..((...))..)).)).)))).(.(((((((.((..((.((((.((((.......)))).)))).))..))))))))).)....)))...)))).)))))((((((.(((((.(.(((((.(((((((((((((.......)))).((((((((((((((((........)))..)))))..))))))))....))))))))).))))).).))	chr1:205718999-205719270(-)$1	1	10	243	699.0000

#PSSM
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	

#score	699.0
#seq	1
#width	233
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_UTR_m1_run2.nuc.txt

#NT
cacacacaugcacacaca	chr11:2152851-2153064(-)$1	213	14	32	51.7118
cacacacaugcgcacaca	chr11:2152477-2152680(-)$1	203	2	20	49.2542
cacacacaugcacacaca	chr11:2152627-2152839(-)$1	212	51	69	51.7118
cacacacaugcacacaca	chr11:2152713-2152917(-)$1	204	59	77	51.7118
cacacacaugcacgcaca	chr8:27529151-27529410(+)$1	259	10	28	47.0508
cacacacaugcacacaca	chr11:2152639-2152844(-)$1	205	56	74	51.7118
cacacacaugcacacaca	chr11:2152663-2152869(-)$1	206	11	29	51.7118
cacacacaugcacacaca	chr11:2152595-2152805(-)$1	210	17	35	51.7118
cacacacaugcacacaca	chr11:2153157-2153382(-)$1	225	176	194	51.7118
cacacacaugcacacaca	chr11:2152717-2152922(-)$1	205	64	82	51.7118
cacacacaugcacacaca	chr11:2152741-2152948(-)$1	207	90	108	51.7118
cacacacaugcgcacaca	chr11:2152577-2152782(-)$1	205	104	122	49.2542
cacacacaugcgcacaca	chr11:2152549-2152761(-)$1	212	83	101	49.2542
cacacacaugcacacaca	chr11:2152799-2153027(-)$1	228	34	52	51.7118
cacacacaugcgcacaca	chr11:2152480-2152682(-)$1	202	4	22	49.2542
cacacacaugcacacaca	chr11:2152624-2152827(-)$1	203	39	57	51.7118
cacacagaugagcacaca	chr11:2153200-2153409(-)$1	209	155	173	40.6101
cacacacaugcacacaca	chr11:2152997-2153214(-)$1	217	8	26	51.7118
cacacacaugcgcacaca	chr11:2152492-2152702(-)$1	210	24	42	49.2542
cacacacaugcacacaca	chr11:2152605-2152812(-)$1	207	24	42	51.7118
cacacacaugcacacaca	chr11:2152748-2152958(-)$1	210	100	118	51.7118
cacacacaugcacacaca	chr11:2152709-2152913(-)$1	204	55	73	51.7118
cacacagaugagcacaca	chr11:2153209-2153417(-)$1	208	163	181	40.6101
cacacacaugcacacaca	chr11:2152864-2153095(-)$1	231	45	63	51.7118
cacacagaugagcacaca	chr11:2153217-2153431(-)$1	214	177	195	40.6101
cacacacaugcacacaca	chr11:2152694-2152898(-)$1	204	40	58	51.7118
cacacacaugcacacaca	chr11:2152827-2153045(-)$1	218	52	70	51.7118
cauacacaugcacacaca	chr8:27529230-27529502(+)$1	272	1	19	46.8813
cacacacaugcacacaca	chr11:2152783-2152999(-)$1	216	6	24	51.7118
cacacacaugcacacaca	chr11:2152619-2152824(-)$1	205	36	54	51.7118
cacacacaugcacacaca	chr11:2152669-2152876(-)$1	207	18	36	51.7118
cacacacaugcacacaca	chr11:2152677-2152880(-)$1	203	22	40	51.7118
cacacagaugagcacaca	chr11:2153232-2153441(-)$1	209	187	205	40.6101
cacacacaugcacacaca	chr11:2152733-2152936(-)$1	203	78	96	51.7118
cacacacaugcacacaca	chr11:2152698-2152903(-)$1	205	45	63	51.7118
cacacacaugcacacaca	chr11:2152651-2152857(-)$1	206	69	87	51.7118
cacacacaugcacgcaca	chr8:27529104-27529351(+)$1	247	57	75	47.0508
cacacacaugcgcacaca	chr11:2152487-2152689(-)$1	202	11	29	49.2542
cacacacaugcgcacaca	chr11:2152489-2152692(-)$1	203	14	32	49.2542
cacacacaugcacacaca	chr11:2152648-2152851(-)$1	203	63	81	51.7118
cacacacaugcgcacaca	chr11:2152562-2152764(-)$1	202	86	104	49.2542
cacacacaugcacacaca	chr11:2152765-2152983(-)$1	218	125	143	51.7118
cacacacaugcacacaca	chr11:2152644-2152848(-)$1	204	60	78	51.7118
cacacacaugcacacaca	chr11:2152588-2152795(-)$1	207	7	25	51.7118
cacacacaugcacacaca	chr11:2152722-2152929(-)$1	207	71	89	51.7118
cacacacaugcacacaca	chr11:2152657-2152861(-)$1	204	3	21	51.7118
cacacacaugcacacaca	chr11:2152612-2152816(-)$1	204	28	46	51.7118
cacacacaugcacacaca	chr11:2152845-2153051(-)$1	206	1	19	51.7118
cacacacacgcacacaca	chr15:75663280-75663602(-)$1	322	27	45	46.8813
cacacacaugcacacaca	chr11:2152758-2152965(-)$1	207	107	125	51.7118
cacacacaugcacacaca	chr11:2152703-2152909(-)$1	206	51	69	51.7118
cacacacaugcacacaca	chr11:2152616-2152818(-)$1	202	30	48	51.7118
cacacacaugcgcacaca	chr11:2152530-2152741(-)$1	211	63	81	49.2542
cacacacaugcacacaca	chr11:2152582-2152788(-)$1	206	0	18	51.7118
cacacacaugcgcacaca	chr11:2152541-2152749(-)$1	208	71	89	49.2542
cacacacaugcacacaca	chr11:2153014-2153237(-)$1	223	31	49	51.7118
cacacacaugcacacaca	chr11:2152736-2152940(-)$1	204	82	100	51.7118
cacacacaugcgcacaca	chr11:2152509-2152730(-)$1	221	52	70	49.2542

#otherMatches

#Struct PSSM
ccooooooccc:::::::	chr11:2152661-2152863(-)$1	202	5	23	51.7118
b:::::::cccppppppp	chr11:2152851-2153064(-)$1	213	14	32	51.7118
DDDD{CCCddddqqqqqq	chr11:2152477-2152680(-)$1	203	2	20	49.2542
ccooooooccc:::::::	chr11:2152627-2152839(-)$1	212	51	69	51.7118
b:::::eeeeexxxxxxx	chr11:2152713-2152917(-)$1	204	59	77	51.7118
qqqqqqffffff:CCC::	chr8:27529151-27529410(+)$1	259	10	28	47.0508
ccooooooccc:::::::	chr11:2152639-2152844(-)$1	205	56	74	51.7118
b:::::::cccppppppp	chr11:2152663-2152869(-)$1	206	11	29	51.7118
::::::::cccppppppp	chr11:2152595-2152805(-)$1	210	17	35	51.7118
b:::::EEEEE:::::::	chr11:2153157-2153382(-)$1	225	176	194	51.7118
b:::::eeeeexxxxxxx	chr11:2152717-2152922(-)$1	205	64	82	51.7118
b:::::eeeeexxxxxxx	chr11:2152741-2152948(-)$1	207	90	108	51.7118
::::::::ddddqqqqqq	chr11:2152577-2152782(-)$1	205	104	122	49.2542
::::::::FFFFFF::::	chr11:2152549-2152761(-)$1	212	83	101	49.2542
BNNNNNEEEEE:::::::	chr11:2152799-2153027(-)$1	228	34	52	51.7118
EE{CCC::ddddqqqqqq	chr11:2152480-2152682(-)$1	202	4	22	49.2542
ccooooooccc:::::::	chr11:2152624-2152827(-)$1	203	39	57	51.7118
:::::EEEEE:bbnnnnn	chr11:2153200-2153409(-)$1	209	155	173	40.6101
BPPPPPPPDDDD::::::	chr11:2152997-2153214(-)$1	217	8	26	51.7118
::::::::ddddqqqqqq	chr11:2152492-2152702(-)$1	210	24	42	49.2542
BOOOOOODDDD:::::::	chr11:2152605-2152812(-)$1	207	24	42	51.7118
b:::::eeeeexxxxxxx	chr11:2152748-2152958(-)$1	210	100	118	51.7118
b:::::eeeeexxxxxxx	chr11:2152709-2152913(-)$1	204	55	73	51.7118
:::::EEEEE:bbnnnnn	chr11:2153209-2153417(-)$1	208	163	181	40.6101
b:::::::cccppppppp	chr11:2152864-2153095(-)$1	231	45	63	51.7118
::::::DDDD:bbnnnnn	chr11:2153217-2153431(-)$1	214	177	195	40.6101
b:::::eeeeexxxxxxx	chr11:2152694-2152898(-)$1	204	40	58	51.7118
ccooooooccc:::::::	chr11:2152827-2153045(-)$1	218	52	70	51.7118
:::::::::CCC::::::	chr8:27529230-27529502(+)$1	272	1	19	46.8813
B:::::::cccppppppp	chr11:2152783-2152999(-)$1	216	6	24	51.7118
ccooooooccc:::::::	chr11:2152619-2152824(-)$1	205	36	54	51.7118
b:::::eeeeexxxxxxx	chr11:2152669-2152876(-)$1	207	18	36	51.7118
b:::::eeeeexxxxxxx	chr11:2152677-2152880(-)$1	203	22	40	51.7118
:::::::::::bbnnnnn	chr11:2153232-2153441(-)$1	209	187	205	40.6101
b:::::eeeeexxxxxxx	chr11:2152733-2152936(-)$1	203	78	96	51.7118
b:::::eeeeexxxxxxx	chr11:2152698-2152903(-)$1	205	45	63	51.7118
ccooooooccc:::::::	chr11:2152651-2152857(-)$1	206	69	87	51.7118
qqqqqqffffff:cccqq	chr8:27529104-27529351(+)$1	247	57	75	47.0508
EE{CCC::ddddqqqqqq	chr11:2152487-2152689(-)$1	202	11	29	49.2542
EE{CCC::ddddqqqqqq	chr11:2152489-2152692(-)$1	203	14	32	49.2542
ccooooooccc:::::::	chr11:2152648-2152851(-)$1	203	63	81	51.7118
::::::::FFFFFF::::	chr11:2152562-2152764(-)$1	202	86	104	49.2542
b:::::eeeeexxxxxxx	chr11:2152765-2152983(-)$1	218	125	143	51.7118
ccooooooccc:::::::	chr11:2152644-2152848(-)$1	204	60	78	51.7118
ccooooooccc:::::::	chr11:2152588-2152795(-)$1	207	7	25	51.7118
b:::::eeeeexxxxxxx	chr11:2152722-2152929(-)$1	207	71	89	51.7118
ccooooooccc:::::::	chr11:2152657-2152861(-)$1	204	3	21	51.7118
ccooooooccc:::::::	chr11:2152612-2152816(-)$1	204	28	46	51.7118
B:::::::cccppppppp	chr11:2152845-2153051(-)$1	206	1	19	51.7118
KKA{DDDD{A{BBOOOOO	chr15:75663280-75663602(-)$1	322	27	45	46.8813
b:::::eeeeexxxxxxx	chr11:2152758-2152965(-)$1	207	107	125	51.7118
b:::::eeeeexxxxxxx	chr11:2152703-2152909(-)$1	206	51	69	51.7118
ccooooooccc:::::::	chr11:2152616-2152818(-)$1	202	30	48	51.7118
::::::::ddddqqqqqq	chr11:2152530-2152741(-)$1	211	63	81	49.2542
::::::EEEEE:::::::	chr11:2152582-2152788(-)$1	206	0	18	51.7118
::::::::ddddqqqqqq	chr11:2152541-2152749(-)$1	208	71	89	49.2542
ccooooooccc:::::::	chr11:2153014-2153237(-)$1	223	31	49	51.7118
b:::::eeeeexxxxxxx	chr11:2152736-2152940(-)$1	204	82	100	51.7118
::::::::ddddqqqqqq	chr11:2152509-2152730(-)$1	221	52	70	49.2542

#DB
((......))).......	chr11:2152661-2152863(-)$1	1	5	23	51.7118
).......(((.......	chr11:2152851-2153064(-)$1	1	14	32	51.7118
((((.(((((((......	chr11:2152477-2152680(-)$1	1	2	20	49.2542
((......))).......	chr11:2152627-2152839(-)$1	1	51	69	51.7118
).....(((((.......	chr11:2152713-2152917(-)$1	1	59	77	51.7118
......)))))).(((..	chr8:27529151-27529410(+)$1	1	10	28	47.0508
((......))).......	chr11:2152639-2152844(-)$1	1	56	74	51.7118
).......(((.......	chr11:2152663-2152869(-)$1	1	11	29	51.7118
........(((.......	chr11:2152595-2152805(-)$1	1	17	35	51.7118
).....))))).......	chr11:2153157-2153382(-)$1	1	176	194	51.7118
).....(((((.......	chr11:2152717-2152922(-)$1	1	64	82	51.7118
).....(((((.......	chr11:2152741-2152948(-)$1	1	90	108	51.7118
........((((......	chr11:2152577-2152782(-)$1	1	104	122	49.2542
........))))))....	chr11:2152549-2152761(-)$1	1	83	101	49.2542
(.....(((((.......	chr11:2152799-2153027(-)$1	1	34	52	51.7118
((.(((..((((......	chr11:2152480-2152682(-)$1	1	4	22	49.2542
((......))).......	chr11:2152624-2152827(-)$1	1	39	57	51.7118
.....))))).((.....	chr11:2153200-2153409(-)$1	1	155	173	40.6101
(.......((((......	chr11:2152997-2153214(-)$1	1	8	26	51.7118
........((((......	chr11:2152492-2152702(-)$1	1	24	42	49.2542
(......((((.......	chr11:2152605-2152812(-)$1	1	24	42	51.7118
).....(((((.......	chr11:2152748-2152958(-)$1	1	100	118	51.7118
).....(((((.......	chr11:2152709-2152913(-)$1	1	55	73	51.7118
.....))))).((.....	chr11:2153209-2153417(-)$1	1	163	181	40.6101
).......(((.......	chr11:2152864-2153095(-)$1	1	45	63	51.7118
......)))).((.....	chr11:2153217-2153431(-)$1	1	177	195	40.6101
).....(((((.......	chr11:2152694-2152898(-)$1	1	40	58	51.7118
((......))).......	chr11:2152827-2153045(-)$1	1	52	70	51.7118
.........(((......	chr8:27529230-27529502(+)$1	1	1	19	46.8813
(.......(((.......	chr11:2152783-2152999(-)$1	1	6	24	51.7118
((......))).......	chr11:2152619-2152824(-)$1	1	36	54	51.7118
).....(((((.......	chr11:2152669-2152876(-)$1	1	18	36	51.7118
).....(((((.......	chr11:2152677-2152880(-)$1	1	22	40	51.7118
...........((.....	chr11:2153232-2153441(-)$1	1	187	205	40.6101
).....(((((.......	chr11:2152733-2152936(-)$1	1	78	96	51.7118
).....(((((.......	chr11:2152698-2152903(-)$1	1	45	63	51.7118
((......))).......	chr11:2152651-2152857(-)$1	1	69	87	51.7118
......)))))).(((..	chr8:27529104-27529351(+)$1	1	57	75	47.0508
((.(((..((((......	chr11:2152487-2152689(-)$1	1	11	29	49.2542
((.(((..((((......	chr11:2152489-2152692(-)$1	1	14	32	49.2542
((......))).......	chr11:2152648-2152851(-)$1	1	63	81	51.7118
........))))))....	chr11:2152562-2152764(-)$1	1	86	104	49.2542
).....(((((.......	chr11:2152765-2152983(-)$1	1	125	143	51.7118
((......))).......	chr11:2152644-2152848(-)$1	1	60	78	51.7118
((......))).......	chr11:2152588-2152795(-)$1	1	7	25	51.7118
).....(((((.......	chr11:2152722-2152929(-)$1	1	71	89	51.7118
((......))).......	chr11:2152657-2152861(-)$1	1	3	21	51.7118
((......))).......	chr11:2152612-2152816(-)$1	1	28	46	51.7118
(.......(((.......	chr11:2152845-2153051(-)$1	1	1	19	51.7118
..(.((((.(.((.....	chr15:75663280-75663602(-)$1	1	27	45	46.8813
).....(((((.......	chr11:2152758-2152965(-)$1	1	107	125	51.7118
).....(((((.......	chr11:2152703-2152909(-)$1	1	51	69	51.7118
((......))).......	chr11:2152616-2152818(-)$1	1	30	48	51.7118
........((((......	chr11:2152530-2152741(-)$1	1	63	81	49.2542
......(((((.......	chr11:2152582-2152788(-)$1	1	0	18	51.7118
........((((......	chr11:2152541-2152749(-)$1	1	71	89	49.2542
((......))).......	chr11:2153014-2153237(-)$1	1	31	49	51.7118
).....(((((.......	chr11:2152736-2152940(-)$1	1	82	100	51.7118
........((((......	chr11:2152509-2152730(-)$1	1	52	70	49.2542

#PSSM
c : 0.99	
a : 0.99	
c : 0.98	u : 0.01	
a : 0.99	
c : 0.99	
a : 0.99	
c : 0.93	g : 0.06	
a : 0.99	
u : 0.98	c : 0.01	
g : 0.99	
c : 0.93	a : 0.06	
a : 0.74	g : 0.25	
c : 0.99	
a : 0.96	g : 0.03	
c : 0.99	
a : 0.99	
c : 0.99	
a : 0.99	

#score	2960.576271186437
#seq	59
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_UTR_m2_run1.nuc.txt

#NT
CUG	chr2:242617665-242617986(-)$1	321	0	3	8.9999
CUG	chr17:79651001-79651242(+)$1	241	4	7	8.9999
CUG	chr18:72163528-72163869(+)$1	341	96	99	8.9999
CUG	chr19:54649444-54649686(+)$1	242	90	93	8.9999
CUG	chr22:24237040-24237352(+)$1	312	44	47	8.9999
CUG	chr22:35719064-35719307(+)$1	243	1	4	8.9999
CUG	chr16:90023935-90024212(+)$1	277	13	16	8.9999
CUG	chrX:152602031-152602323(+)$1	292	5	8	8.9999
CUG	chr5:141392398-141392691(-)$1	293	9	12	8.9999
CUG	chr16:31097814-31098087(-)$1	273	10	13	8.9999
CUG	chr2:27354736-27354999(-)$1	263	4	7	8.9999
CUG	chr8:124368484-124368768(-)$1	284	11	14	8.9999
CUG	chr9:95015503-95015769(-)$1	266	6	9	8.9999
CUG	chr3:142720385-142720681(+)$1	296	1	4	8.9999
CUG	chr16:31477263-31477512(+)$1	249	10	13	8.9999
CUG	chr11:68178983-68179206(+)$1	223	42	45	8.9999
CUG	chr19:10259431-10259663(-)$1	232	30	33	8.9999
CUG	chr17:35715799-35716057(-)$1	258	2	5	8.9999
CUG	chr14:100604013-100604281(+)$1	268	1	4	8.9999
CUG	chr19:2272707-2272975(+)$1	268	10	13	8.9999
CUG	chr16:23504541-23504783(-)$1	242	70	73	8.9999
CUG	chr17:74041969-74042227(-)$1	258	13	16	8.9999
CUG	chr16:67229809-67230045(+)$1	236	108	111	8.9999
CUG	chrX:24167806-24168075(+)$1	269	61	64	8.9999
CUG	chr14:104158629-104158855(+)$1	226	5	8	8.9999
CUG	chr19:16630815-16631070(-)$1	255	119	122	8.9999
CUG	chr20:60889478-60889708(-)$1	230	0	3	8.9999
CUG	chr3:169863072-169863350(-)$1	278	29	32	8.9999
CUG	chr12:6638101-6638347(+)$1	246	51	54	8.9999
CUG	chr14:20847017-20847286(-)$1	269	13	16	8.9999
CUG	chr20:60714623-60714877(-)$1	254	0	3	8.9999
CUG	chr15:72500798-72501065(-)$1	267	13	16	8.9999
CUG	chr20:10401043-10401323(-)$1	280	38	41	8.9999
CUG	chr12:57928696-57928944(-)$1	248	19	22	8.9999
CUG	chr3:15287056-15287309(+)$1	253	41	44	8.9999
CUG	chr16:720892-721106(+)$1	214	4	7	8.9999
CUG	chr15:40632068-40632369(-)$1	301	36	39	8.9999
CUG	chr12:111891337-111891598(-)$1	261	163	166	8.9999
CUG	chr8:145690192-145690436(-)$1	244	27	30	8.9999
CUG	chr18:47802960-47803236(-)$1	276	1	4	8.9999
CUG	chr22:38239755-38240034(-)$1	279	32	35	8.9999
CUG	chr10:74033695-74033965(+)$1	270	19	22	8.9999
CUG	chr16:67262655-67262929(+)$1	274	14	17	8.9999
CUG	chr8:25198374-25198654(+)$1	280	91	94	8.9999
cug	chr20:43560544-43560806(+)$1	262	15	18	8.9999
CUG	chr16:15127127-15127406(+)$1	279	10	13	8.9999
cug	chr10:94451999-94452257(+)$1	258	14	17	8.9999
CUG	chr12:125398177-125398446(-)$1	269	100	103	8.9999
CUG	chr7:75614416-75614673(+)$1	257	1	4	8.9999
CUG	chr7:1474547-1474846(-)$1	299	48	51	8.9999
CUG	chr16:2012183-2012424(-)$1	241	67	70	8.9999
CUG	chr3:47037002-47037260(+)$1	258	3	6	8.9999
CUG	chr2:219104086-219104352(+)$1	266	218	221	8.9999
cug	chr1:1688105-1688347(-)$1	242	6	9	8.9999
CUG	chr16:30771767-30772035(-)$1	268	53	56	8.9999
CUG	chr15:75654551-75654788(-)$1	237	28	31	8.9999
CUG	chr17:63534210-63534420(-)$1	210	14	17	8.9999
CUG	chr19:52531327-52531624(-)$1	297	54	57	8.9999
CUG	chr19:57862940-57863218(+)$1	278	55	58	8.9999
CUG	chr3:183962386-183962642(-)$1	256	44	47	8.9999
CUG	chr9:117027238-117027465(+)$1	227	39	42	8.9999
CUG	chr19:3207124-3207387(+)$1	263	48	51	8.9999
CUG	chr1:155313829-155314095(-)$1	266	18	21	8.9999
CUG	chr11:112099274-112099534(+)$1	260	15	18	8.9999
CUG	chr4:1953856-1954111(+)$1	255	2	5	8.9999
CUG	chr19:13059498-13059746(+)$1	248	10	13	8.9999
CUG	chr16:4748278-4748529(-)$1	251	0	3	8.9999
CUG	chr2:11605754-11606004(-)$1	250	41	44	8.9999
CUG	chr11:61495653-61495914(+)$1	261	52	55	8.9999
CUG	chr2:242662575-242662847(+)$1	272	23	26	8.9999
CUG	chr11:247329-247587(+)$1	258	79	82	8.9999
CUG	chr2:190334863-190335108(+)$1	245	37	40	8.9999
CUG	chr16:2024266-2024525(+)$1	259	9	12	8.9999
CUG	chr6:168312025-168312315(+)$1	290	61	64	8.9999
CUG	chr17:72860826-72861046(-)$1	220	17	20	8.9999
CUG	chr17:46051712-46051974(+)$1	262	5	8	8.9999
CUG	chr19:35500180-35500510(+)$1	330	96	99	8.9999
CUG	chr6:151197203-151197448(+)$1	245	75	78	8.9999
CUG	chr19:17384727-17384982(+)$1	255	76	79	8.9999
CUG	chr1:28696175-28696479(+)$1	304	28	31	8.9999
CUG	chr15:74914719-74915043(+)$1	324	45	48	8.9999
CUG	chr16:22320213-22320504(+)$1	291	59	62	8.9999
CUG	chr19:54647744-54648002(+)$1	258	60	63	8.9999
CUG	chr18:43677988-43678269(-)$1	281	32	35	8.9999
CUG	chr2:220045369-220045613(+)$1	244	16	19	8.9999
CUG	chr2:38545534-38545805(-)$1	271	28	31	8.9999
CUG	chr17:45727708-45727954(+)$1	246	7	10	8.9999
CUG	chr17:73150237-73150563(-)$1	326	35	38	8.9999
CUG	chr12:30872010-30872279(-)$1	269	3	6	8.9999
CUG	chr12:57627586-57627838(+)$1	252	8	11	8.9999
CUG	chr16:456264-456533(+)$1	269	5	8	8.9999
CUG	chr15:52521190-52521454(-)$1	264	53	56	8.9999
CUG	chr16:31122434-31122705(+)$1	271	36	39	8.9999
CUG	chr10:73975777-73976042(+)$1	265	7	10	8.9999
CUG	chr14:35777133-35777435(+)$1	302	50	53	8.9999
CUG	chr2:233626002-233626267(+)$1	265	64	67	8.9999

#otherMatches

#Struct PSSM
FFF	chr16:83986846-83987120(+)$1	274	51	54	8.9999
DDD	chr2:242617665-242617986(-)$1	321	0	3	8.9999
:::	chr17:79651001-79651242(+)$1	241	4	7	8.9999
gg:	chr18:72163528-72163869(+)$1	341	96	99	8.9999
]bb	chr19:54649444-54649686(+)$1	242	90	93	8.9999
eee	chr22:24237040-24237352(+)$1	312	44	47	8.9999
DDD	chr22:35719064-35719307(+)$1	243	1	4	8.9999
ddd	chr16:90023935-90024212(+)$1	277	13	16	8.9999
eee	chrX:152602031-152602323(+)$1	292	5	8	8.9999
cc[	chr5:141392398-141392691(-)$1	293	9	12	8.9999
DDD	chr16:31097814-31098087(-)$1	273	10	13	8.9999
:::	chr2:27354736-27354999(-)$1	263	4	7	8.9999
KKD	chr8:124368484-124368768(-)$1	284	11	14	8.9999
dd[	chr9:95015503-95015769(-)$1	266	6	9	8.9999
DDD	chr3:142720385-142720681(+)$1	296	1	4	8.9999
EE:	chr16:31477263-31477512(+)$1	249	10	13	8.9999
ddm	chr11:68178983-68179206(+)$1	223	42	45	8.9999
b[e	chr19:10259431-10259663(-)$1	232	30	33	8.9999
GGG	chr17:35715799-35716057(-)$1	258	2	5	8.9999
::B	chr14:100604013-100604281(+)$1	268	1	4	8.9999
cc:	chr19:2272707-2272975(+)$1	268	10	13	8.9999
44d	chr16:23504541-23504783(-)$1	242	70	73	8.9999
ECC	chr17:74041969-74042227(-)$1	258	13	16	8.9999
qqc	chr16:67229809-67230045(+)$1	236	108	111	8.9999
e[b	chrX:24167806-24168075(+)$1	269	61	64	8.9999
[ff	chr14:104158629-104158855(+)$1	226	5	8	8.9999
lle	chr19:16630815-16631070(-)$1	255	119	122	8.9999
GGG	chr20:60889478-60889708(-)$1	230	0	3	8.9999
D{E	chr3:169863072-169863350(-)$1	278	29	32	8.9999
eee	chr12:6638101-6638347(+)$1	246	51	54	8.9999
ee[	chr14:20847017-20847286(-)$1	269	13	16	8.9999
::d	chr20:60714623-60714877(-)$1	254	0	3	8.9999
FFF	chr15:72500798-72501065(-)$1	267	13	16	8.9999
::H	chr20:10401043-10401323(-)$1	280	38	41	8.9999
FFE	chr12:57928696-57928944(-)$1	248	19	22	8.9999
ddd	chr3:15287056-15287309(+)$1	253	41	44	8.9999
FFF	chr16:720892-721106(+)$1	214	4	7	8.9999
rrc	chr15:40632068-40632369(-)$1	301	36	39	8.9999
eee	chr12:111891337-111891598(-)$1	261	163	166	8.9999
hhh	chr8:145690192-145690436(-)$1	244	27	30	8.9999
:::	chr18:47802960-47803236(-)$1	276	1	4	8.9999
oee	chr22:38239755-38240034(-)$1	279	32	35	8.9999
::E	chr10:74033695-74033965(+)$1	270	19	22	8.9999
ddd	chr16:67262655-67262929(+)$1	274	14	17	8.9999
dd]	chr8:25198374-25198654(+)$1	280	91	94	8.9999
DD:	chr20:43560544-43560806(+)$1	262	15	18	8.9999
E{A	chr16:15127127-15127406(+)$1	279	10	13	8.9999
III	chr10:94451999-94452257(+)$1	258	14	17	8.9999
##e	chr12:125398177-125398446(-)$1	269	100	103	8.9999
::d	chr7:75614416-75614673(+)$1	257	1	4	8.9999
iii	chr7:1474547-1474846(-)$1	299	48	51	8.9999
ccc	chr16:2012183-2012424(-)$1	241	67	70	8.9999
DDD	chr3:47037002-47037260(+)$1	258	3	6	8.9999
ooa	chr2:219104086-219104352(+)$1	266	218	221	8.9999
:GG	chr1:1688105-1688347(-)$1	242	6	9	8.9999
ddd	chr16:30771767-30772035(-)$1	268	53	56	8.9999
odd	chr15:75654551-75654788(-)$1	237	28	31	8.9999
ee[	chr17:63534210-63534420(-)$1	210	14	17	8.9999
ddd	chr19:52531327-52531624(-)$1	297	54	57	8.9999
ccc	chr19:57862940-57863218(+)$1	278	55	58	8.9999
!!d	chr3:183962386-183962642(-)$1	256	44	47	8.9999
EEE	chr9:117027238-117027465(+)$1	227	39	42	8.9999
::G	chr19:3207124-3207387(+)$1	263	48	51	8.9999
::F	chr1:155313829-155314095(-)$1	266	18	21	8.9999
hhh	chr11:112099274-112099534(+)$1	260	15	18	8.9999
:::	chr4:1953856-1954111(+)$1	255	2	5	8.9999
FF{	chr19:13059498-13059746(+)$1	248	10	13	8.9999
::E	chr16:4748278-4748529(-)$1	251	0	3	8.9999
fcc	chr2:11605754-11606004(-)$1	250	41	44	8.9999
fff	chr11:61495653-61495914(+)$1	261	52	55	8.9999
ggg	chr2:242662575-242662847(+)$1	272	23	26	8.9999
33a	chr11:247329-247587(+)$1	258	79	82	8.9999
ddd	chr2:190334863-190335108(+)$1	245	37	40	8.9999
FF{	chr16:2024266-2024525(+)$1	259	9	12	8.9999
c]a	chr6:168312025-168312315(+)$1	290	61	64	8.9999
DD:	chr17:72860826-72861046(-)$1	220	17	20	8.9999
HHH	chr17:46051712-46051974(+)$1	262	5	8	8.9999
[bb	chr19:35500180-35500510(+)$1	330	96	99	8.9999
b[b	chr6:151197203-151197448(+)$1	245	75	78	8.9999
LLC	chr19:17384727-17384982(+)$1	255	76	79	8.9999
:::	chr1:28696175-28696479(+)$1	304	28	31	8.9999
eee	chr15:74914719-74915043(+)$1	324	45	48	8.9999
ebb	chr16:22320213-22320504(+)$1	291	59	62	8.9999
fff	chr19:54647744-54648002(+)$1	258	60	63	8.9999
===	chr18:43677988-43678269(-)$1	281	32	35	8.9999
FFF	chr2:220045369-220045613(+)$1	244	16	19	8.9999
G{C	chr2:38545534-38545805(-)$1	271	28	31	8.9999
ddd	chr17:45727708-45727954(+)$1	246	7	10	8.9999
nnd	chr17:73150237-73150563(-)$1	326	35	38	8.9999
FFF	chr12:30872010-30872279(-)$1	269	3	6	8.9999
ccc	chr12:57627586-57627838(+)$1	252	8	11	8.9999
HHH	chr16:456264-456533(+)$1	269	5	8	8.9999
lll	chr15:52521190-52521454(-)$1	264	53	56	8.9999
FF:	chr16:31122434-31122705(+)$1	271	36	39	8.9999
KA{	chr10:73975777-73976042(+)$1	265	7	10	8.9999
:gg	chr14:35777133-35777435(+)$1	302	50	53	8.9999
fff	chr2:233626002-233626267(+)$1	265	64	67	8.9999

#DB
(((	chr16:83986846-83987120(+)$1	1	51	54	8.9999
(((	chr2:242617665-242617986(-)$1	1	0	3	8.9999
...	chr17:79651001-79651242(+)$1	1	4	7	8.9999
)).	chr18:72163528-72163869(+)$1	1	96	99	8.9999
.))	chr19:54649444-54649686(+)$1	1	90	93	8.9999
(((	chr22:24237040-24237352(+)$1	1	44	47	8.9999
(((	chr22:35719064-35719307(+)$1	1	1	4	8.9999
(((	chr16:90023935-90024212(+)$1	1	13	16	8.9999
(((	chrX:152602031-152602323(+)$1	1	5	8	8.9999
((.	chr5:141392398-141392691(-)$1	1	9	12	8.9999
(((	chr16:31097814-31098087(-)$1	1	10	13	8.9999
...	chr2:27354736-27354999(-)$1	1	4	7	8.9999
..(	chr8:124368484-124368768(-)$1	1	11	14	8.9999
((.	chr9:95015503-95015769(-)$1	1	6	9	8.9999
(((	chr3:142720385-142720681(+)$1	1	1	4	8.9999
((.	chr16:31477263-31477512(+)$1	1	10	13	8.9999
((.	chr11:68178983-68179206(+)$1	1	42	45	8.9999
(.(	chr19:10259431-10259663(-)$1	1	30	33	8.9999
(((	chr17:35715799-35716057(-)$1	1	2	5	8.9999
..(	chr14:100604013-100604281(+)$1	1	1	4	8.9999
)).	chr19:2272707-2272975(+)$1	1	10	13	8.9999
..)	chr16:23504541-23504783(-)$1	1	70	73	8.9999
(((	chr17:74041969-74042227(-)$1	1	13	16	8.9999
..)	chr16:67229809-67230045(+)$1	1	108	111	8.9999
(.(	chrX:24167806-24168075(+)$1	1	61	64	8.9999
.((	chr14:104158629-104158855(+)$1	1	5	8	8.9999
..)	chr19:16630815-16631070(-)$1	1	119	122	8.9999
(((	chr20:60889478-60889708(-)$1	1	0	3	8.9999
(.(	chr3:169863072-169863350(-)$1	1	29	32	8.9999
)))	chr12:6638101-6638347(+)$1	1	51	54	8.9999
((.	chr14:20847017-20847286(-)$1	1	13	16	8.9999
..(	chr20:60714623-60714877(-)$1	1	0	3	8.9999
(((	chr15:72500798-72501065(-)$1	1	13	16	8.9999
..(	chr20:10401043-10401323(-)$1	1	38	41	8.9999
(((	chr12:57928696-57928944(-)$1	1	19	22	8.9999
)))	chr3:15287056-15287309(+)$1	1	41	44	8.9999
(((	chr16:720892-721106(+)$1	1	4	7	8.9999
..)	chr15:40632068-40632369(-)$1	1	36	39	8.9999
(((	chr12:111891337-111891598(-)$1	1	163	166	8.9999
(((	chr8:145690192-145690436(-)$1	1	27	30	8.9999
...	chr18:47802960-47803236(-)$1	1	1	4	8.9999
.))	chr22:38239755-38240034(-)$1	1	32	35	8.9999
..(	chr10:74033695-74033965(+)$1	1	19	22	8.9999
(((	chr16:67262655-67262929(+)$1	1	14	17	8.9999
)).	chr8:25198374-25198654(+)$1	1	91	94	8.9999
((.	chr20:43560544-43560806(+)$1	1	15	18	8.9999
(.(	chr16:15127127-15127406(+)$1	1	10	13	8.9999
(((	chr10:94451999-94452257(+)$1	1	14	17	8.9999
..(	chr12:125398177-125398446(-)$1	1	100	103	8.9999
..(	chr7:75614416-75614673(+)$1	1	1	4	8.9999
(((	chr7:1474547-1474846(-)$1	1	48	51	8.9999
(((	chr16:2012183-2012424(-)$1	1	67	70	8.9999
(((	chr3:47037002-47037260(+)$1	1	3	6	8.9999
..)	chr2:219104086-219104352(+)$1	1	218	221	8.9999
.((	chr1:1688105-1688347(-)$1	1	6	9	8.9999
)))	chr16:30771767-30772035(-)$1	1	53	56	8.9999
.))	chr15:75654551-75654788(-)$1	1	28	31	8.9999
((.	chr17:63534210-63534420(-)$1	1	14	17	8.9999
)))	chr19:52531327-52531624(-)$1	1	54	57	8.9999
(((	chr19:57862940-57863218(+)$1	1	55	58	8.9999
..(	chr3:183962386-183962642(-)$1	1	44	47	8.9999
(((	chr9:117027238-117027465(+)$1	1	39	42	8.9999
..(	chr19:3207124-3207387(+)$1	1	48	51	8.9999
..(	chr1:155313829-155314095(-)$1	1	18	21	8.9999
(((	chr11:112099274-112099534(+)$1	1	15	18	8.9999
...	chr4:1953856-1954111(+)$1	1	2	5	8.9999
((.	chr19:13059498-13059746(+)$1	1	10	13	8.9999
..(	chr16:4748278-4748529(-)$1	1	0	3	8.9999
(((	chr2:11605754-11606004(-)$1	1	41	44	8.9999
(((	chr11:61495653-61495914(+)$1	1	52	55	8.9999
(((	chr2:242662575-242662847(+)$1	1	23	26	8.9999
..)	chr11:247329-247587(+)$1	1	79	82	8.9999
(((	chr2:190334863-190335108(+)$1	1	37	40	8.9999
((.	chr16:2024266-2024525(+)$1	1	9	12	8.9999
).)	chr6:168312025-168312315(+)$1	1	61	64	8.9999
((.	chr17:72860826-72861046(-)$1	1	17	20	8.9999
(((	chr17:46051712-46051974(+)$1	1	5	8	8.9999
.((	chr19:35500180-35500510(+)$1	1	96	99	8.9999
(.(	chr6:151197203-151197448(+)$1	1	75	78	8.9999
..(	chr19:17384727-17384982(+)$1	1	76	79	8.9999
...	chr1:28696175-28696479(+)$1	1	28	31	8.9999
)))	chr15:74914719-74915043(+)$1	1	45	48	8.9999
)((	chr16:22320213-22320504(+)$1	1	59	62	8.9999
(((	chr19:54647744-54648002(+)$1	1	60	63	8.9999
(((	chr18:43677988-43678269(-)$1	1	32	35	8.9999
(((	chr2:220045369-220045613(+)$1	1	16	19	8.9999
(.(	chr2:38545534-38545805(-)$1	1	28	31	8.9999
(((	chr17:45727708-45727954(+)$1	1	7	10	8.9999
..)	chr17:73150237-73150563(-)$1	1	35	38	8.9999
(((	chr12:30872010-30872279(-)$1	1	3	6	8.9999
(((	chr12:57627586-57627838(+)$1	1	8	11	8.9999
(((	chr16:456264-456533(+)$1	1	5	8	8.9999
...	chr15:52521190-52521454(-)$1	1	53	56	8.9999
((.	chr16:31122434-31122705(+)$1	1	36	39	8.9999
.(.	chr10:73975777-73976042(+)$1	1	7	10	8.9999
.((	chr14:35777133-35777435(+)$1	1	50	53	8.9999
)))	chr2:233626002-233626267(+)$1	1	64	67	8.9999

#PSSM
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_transcript_m2_run2.nuc.txt

#NT
UGUGUGUGGGUCUGUGUGU	chr2:97559869-97560144(-)$1	275	81	100	42.0925
ugugugugcgugugugugc	chr1:246474769-246475077(-)$1	308	92	111	44.4074
UGUGUGUGUGUGUGUGUGU	chr19:47732903-47733171(-)$1	268	248	267	50.4259
ugugugugugucucugugu	chr15:66968548-66968873(+)$1	325	105	124	41.5370
ugugugugugugugugugu	chr22:30223674-30223963(-)$1	289	1	20	50.4259
ugugugagugcgugugugu	chr8:142281950-142282287(-)$1	337	315	334	41.6296
ugugugugcgaguguguga	chr2:121035536-121035800(+)$1	264	31	50	39.2222
ugugugugcauguguguga	chr11:47377477-47377716(-)$1	239	123	142	39.2222
ugugugugcaugugugugu	chr1:27181149-27181385(+)$1	236	181	200	42.3703
ugugugugugugugugugu	chr2:185501135-185501407(+)$1	272	15	34	50.4259
ugugugugugugugugugu	chr3:58320566-58320841(+)$1	275	184	203	50.4259
uguguaggugugugugugc	chr2:10508221-10508475(+)$1	254	53	72	38.9444
ugugugugugugugugugu	chr21:46286394-46286690(-)$1	296	70	89	50.4259
ugugugugugugugugugu	chr10:103590408-103590632(-)$1	224	166	185	50.4259
ugugugugugugugugugu	chr5:149887802-149888062(+)$1	260	83	102	50.4259
ugugugugugugugugugu	chr4:144257826-144258139(+)$1	313	75	94	50.4259
UGAGUUUGUGUGUGUGUGU	chr16:81712386-81712654(+)$1	268	217	236	41.1666
ugugcguguguaugugugu	chr10:103590609-103590871(-)$1	262	216	235	41.9074
Cgugugugugugugugugc	chr5:151167374-151167655(+)$1	281	82	101	43.6666
UGUGCGUGUGAGUGUGUGA	chr21:44479542-44479783(-)$1	241	90	109	38.5740
ugugaguguguguguguga	chr15:66951445-66951746(+)$1	301	83	102	43.0185
ugugugugugugugugugu	chr1:16186741-16187107(+)$1	366	203	222	50.4259
ugugugugugugugugugu	chr21:45323749-45323973(+)$1	224	198	217	50.4259
ugugugugugugugugugu	chr19:1415357-1415639(+)$1	282	1	20	50.4259
ugugugugcgucugugugu	chr19:7704841-7705099(+)$1	258	71	90	42.6481
ugugugcgugugcgugugu	chr1:1276416-1276691(-)$1	275	86	105	42.4629
UGUGGGUGUGUGAGUGUGC	chr19:18554253-18554494(-)$1	241	80	99	39.4074
ugugugugcgugugugugc	chr14:105338539-105338774(+)$1	235	138	157	44.4074
ugugugugugugugugugu	chr12:56991335-56991551(-)$1	216	148	167	50.4259
ugugugagugugugugugC	chr19:49644715-49645020(+)$1	305	164	183	43.7592
ugugagagugugugugugu	chr16:32783852-32784103(+)$1	251	113	132	41.9999
ugugugugugugugugugc	chr2:220308346-220308632(+)$1	286	120	139	47.9259
ugugugugugugugugugu	chr10:118652929-118653248(-)$1	319	141	160	50.4259
uguguguguuugugugugu	chr12:123559182-123559426(-)$1	244	224	243	45.7962
ugugugugugugugugugu	chr2:10349614-10349958(+)$1	344	129	148	50.4259
Ggugugugugugugugugu	chr6:7110631-7110894(+)$1	263	80	99	46.0740
ugugugugugugcgugugu	chr10:80980917-80981209(+)$1	292	110	129	46.7222
ugugugugugugugugugu	chr14:73714865-73715136(+)$1	271	12	31	50.4259
ugugugugugugugugugu	chr19:48223167-48223409(+)$1	242	36	55	50.4259
Cgcgugugugugugugugc	chr11:47380067-47380355(-)$1	288	61	80	38.9444
ugugugugcguguguaugc	chr19:7705155-7705376(+)$1	221	47	66	39.5925
ugugugugugugugugugu	chr1:31378648-31378905(-)$1	257	69	88	50.4259
uuugugugugugugugugc	chr16:89981287-89981553(+)$1	266	92	111	43.1111
ugugugugugugcaugugc	chr5:1211845-1212101(+)$1	256	86	105	39.6851
ugugugugugugugugugu	chr7:6741933-6742177(-)$1	244	0	19	50.4259
ugugugugugugugugugu	chr16:621223-621444(+)$1	221	6	25	50.4259
gguguuugugugugugugg	chr4:1653802-1654098(-)$1	296	63	82	38.1111
Cgugugcgugugugugugu	chr17:3840037-3840314(-)$1	277	258	277	41.9074
ugugugugugugugugugu	chr4:946116-946380(+)$1	264	245	264	50.4259
ugugugugugugcaugugu	chr1:11850810-11851087(-)$1	277	85	104	42.1851
uguguguguguaggugugu	chr7:76628112-76628386(+)$1	274	179	198	41.9074
ugugugugugugugugugu	chr15:22908681-22908940(+)$1	259	1	20	50.4259
ugugugugagugcgugugu	chr10:104240332-104240617(-)$1	285	85	104	42.6481

#otherMatches

#Struct PSSM
e!!==========oooooo	chr4:1363951-1364219(+)$1	268	90	109	42.5555
fff%%%%%%ggggggg$$$	chr2:97559869-97560144(-)$1	275	81	100	42.0925
a]ccc===========[==	chr1:246474769-246475077(-)$1	308	92	111	44.4074
:::::::::::::::::::	chr19:47732903-47733171(-)$1	268	248	267	50.4259
nnnna]bb]a]ccc4444=	chr15:66968548-66968873(+)$1	325	105	124	41.5370
:::::::::::::::::::	chr22:30223674-30223963(-)$1	289	1	20	50.4259
ffffff]==========DD	chr8:142281950-142282287(-)$1	337	315	334	41.6296
ddd####ccc"""dddd!!	chr2:121035536-121035800(+)$1	264	31	50	39.2222
nnnnn==========333d	chr11:47377477-47377716(-)$1	239	123	142	39.2222
}BB}DDDD~~~~FFFFFF@	chr1:27181149-27181385(+)$1	236	181	200	42.3703
=!!bb[a####dddd$$$$	chr2:185501135-185501407(+)$1	272	15	34	50.4259
[a$$$$$ccc[ccc[accc	chr3:58320566-58320841(+)$1	275	184	203	50.4259
=oooooo============	chr2:10508221-10508475(+)$1	254	53	72	38.9444
^^^^^^^^^^^^^^^^^hh	chr21:46286394-46286690(-)$1	296	70	89	50.4259
^^^^^^^^^^^^^^^^^^^	chr10:103590408-103590632(-)$1	224	166	185	50.4259
eee!!a[bb####dddd##	chr5:149887802-149888062(+)$1	260	83	102	50.4259
llldddd]ffffff]dddd	chr4:144257826-144258139(+)$1	313	75	94	50.4259
dda]===============	chr16:81712386-81712654(+)$1	268	217	236	41.1666
========:::::::::JJ	chr10:103590609-103590871(-)$1	262	216	235	41.9074
:A{EEEEE{CCC{AKKEEE	chr5:151167374-151167655(+)$1	281	82	101	43.6666
KCCC{JJJJJJJJJJJJ:c	chr21:44479542-44479783(-)$1	241	90	109	38.5740
]ddddeeeee[bbnnnnnb	chr15:66951445-66951746(+)$1	301	83	102	43.0185
[a####ccc[bbwwwwwww	chr1:16186741-16187107(+)$1	366	203	222	50.4259
JJJJJJJJJ}A::::::::	chr21:45323749-45323973(+)$1	224	198	217	50.4259
B{A{GGGGGGG{ALLLA{A	chr19:1415357-1415639(+)$1	282	1	20	50.4259
iiiiii]ccc666666ggg	chr19:7704841-7705099(+)$1	258	71	90	42.6481
=========ffffff[===	chr1:1276416-1276691(-)$1	275	86	105	42.4629
qqqqqeeeeeffffff[hh	chr19:18554253-18554494(-)$1	241	80	99	39.4074
gggmmmmggggggg4444f	chr14:105338539-105338774(+)$1	235	138	157	44.4074
]bb]a]ccc]a22a]ccc]	chr12:56991335-56991551(-)$1	216	148	167	50.4259
eee[eeeee"""a[ccc[b	chr19:49644715-49645020(+)$1	305	164	183	43.7592
ffff$$$$$ffffffoooo	chr16:32783852-32784103(+)$1	251	113	132	41.9999
dddwwwwwwwwwwwwwwdd	chr2:220308346-220308632(+)$1	286	120	139	47.9259
iiiiiwwwwwwwwwwwwww	chr10:118652929-118653248(-)$1	319	141	160	50.4259
ffqqqqqqqqffffff]bb	chr12:123559182-123559426(-)$1	244	224	243	45.7962
EEEEE{CCC{A{BBKKEEE	chr2:10349614-10349958(+)$1	344	129	148	50.4259
eeee22a]ccc]a]fffff	chr6:7110631-7110894(+)$1	263	80	99	46.0740
=====]a]eeeeedddd[c	chr10:80980917-80981209(+)$1	292	110	129	46.7222
JJJJJMMMMBBLLLA{DDD	chr14:73714865-73715136(+)$1	271	12	31	50.4259
J::::::::::::::::bb	chr19:48223167-48223409(+)$1	242	36	55	50.4259
nnbb]ccc]eeeee22ccc	chr11:47380067-47380355(-)$1	288	61	80	38.9444
cccmmmmccc]========	chr19:7705155-7705376(+)$1	221	47	66	39.5925
f]a]ccc]a]eeeee::::	chr1:31378648-31378905(-)$1	257	69	88	50.4259
=::dddd[bb[dddd[agg	chr16:89981287-89981553(+)$1	266	92	111	43.1111
a[bb[bb[ggggggg[eee	chr5:1211845-1212101(+)$1	256	86	105	39.6851
:::::::::::::iiiiii	chr7:6741933-6742177(-)$1	244	0	19	50.4259
:::::::::::::a[eeee	chr16:621223-621444(+)$1	221	6	25	50.4259
^^^^^^^^^^^^^^^^^^f	chr4:1653802-1654098(-)$1	296	63	82	38.1111
FFFFFFBB}HHHHHHHH::	chr17:3840037-3840314(-)$1	277	258	277	41.9074
]bb::::::::::::::::	chr4:946116-946380(+)$1	264	245	264	50.4259
iii$$$$$eeeeemmmmee	chr1:11850810-11851087(-)$1	277	85	104	42.1851
^^^^^^^^^^^^^^^^^dd	chr7:76628112-76628386(+)$1	274	179	198	41.9074
:::::::::::::BBLLLJ	chr15:22908681-22908940(+)$1	259	1	20	50.4259
>>>ccc]ddddiiiiiiii	chr10:104240332-104240617(-)$1	285	85	104	42.6481

#DB
(..((((((((((......	chr4:1363951-1364219(+)$1	1	90	109	42.5555
(((......(((((((...	chr2:97559869-97560144(-)$1	1	81	100	42.0925
).)))(((((((((((.((	chr1:246474769-246475077(-)$1	1	92	111	44.4074
...................	chr19:47732903-47733171(-)$1	1	248	267	50.4259
....).)).).)))....)	chr15:66968548-66968873(+)$1	1	105	124	41.5370
...................	chr22:30223674-30223963(-)$1	1	1	20	50.4259
)))))).))))))))))))	chr8:142281950-142282287(-)$1	1	315	334	41.6296
(((....(((...((((..	chr2:121035536-121035800(+)$1	1	31	50	39.2222
.....))))))))))...)	chr11:47377477-47377716(-)$1	1	123	142	39.2222
.)).))))....)))))).	chr1:27181149-27181385(+)$1	1	181	200	42.3703
(..((.(....((((....	chr2:185501135-185501407(+)$1	1	15	34	50.4259
.(.....(((.(((.((((	chr3:58320566-58320841(+)$1	1	184	203	50.4259
(......))))))))))))	chr2:10508221-10508475(+)$1	1	53	72	38.9444
.................))	chr21:46286394-46286690(-)$1	1	70	89	50.4259
...................	chr10:103590408-103590632(-)$1	1	166	185	50.4259
(((..(.((....((((..	chr5:149887802-149888062(+)$1	1	83	102	50.4259
...)))).)))))).))))	chr4:144257826-144258139(+)$1	1	75	94	50.4259
))).)))))))))))))))	chr16:81712386-81712654(+)$1	1	217	236	41.1666
)))))))).........))	chr10:103590609-103590871(-)$1	1	216	235	41.9074
.(.(((((.(((.(..(((	chr5:151167374-151167655(+)$1	1	82	101	43.6666
.(((.((((((((((((.(	chr21:44479542-44479783(-)$1	1	90	109	38.5740
.))))(((((.((.....)	chr15:66951445-66951746(+)$1	1	83	102	43.0185
.(....(((.((.......	chr1:16186741-16187107(+)$1	1	203	222	50.4259
))))))))).)........	chr21:45323749-45323973(+)$1	1	198	217	50.4259
(.(.(((((((.(...(.(	chr19:1415357-1415639(+)$1	1	1	20	50.4259
)))))).)))......)))	chr19:7704841-7705099(+)$1	1	71	90	42.6481
)))))))))((((((.(((	chr1:1276416-1276691(-)$1	1	86	105	42.4629
.....)))))((((((.((	chr19:18554253-18554494(-)$1	1	80	99	39.4074
(((....)))))))....)	chr14:105338539-105338774(+)$1	1	138	157	44.4074
.)).).))).)..).))).	chr12:56991335-56991551(-)$1	1	148	167	50.4259
(((.(((((...(.(((.(	chr19:49644715-49645020(+)$1	1	164	183	43.7592
((((.....((((((....	chr16:32783852-32784103(+)$1	1	113	132	41.9999
(((..............))	chr2:220308346-220308632(+)$1	1	120	139	47.9259
(((((..............	chr10:118652929-118653248(-)$1	1	141	160	50.4259
((........)))))).))	chr12:123559182-123559426(-)$1	1	224	243	45.7962
(((((.(((.(.((..(((	chr2:10349614-10349958(+)$1	1	129	148	50.4259
))))..).))).).)))))	chr6:7110631-7110894(+)$1	1	80	99	46.0740
))))).).)))))((((.(	chr10:80980917-80981209(+)$1	1	110	129	46.7222
(((((....((...(.(((	chr14:73714865-73715136(+)$1	1	12	31	50.4259
(................((	chr19:48223167-48223409(+)$1	1	36	55	50.4259
..)).))).)))))..)))	chr11:47380067-47380355(-)$1	1	61	80	38.9444
(((....))).))))))))	chr19:7705155-7705376(+)$1	1	47	66	39.5925
).).))).).)))))....	chr1:31378648-31378905(-)$1	1	69	88	50.4259
)..((((.((.((((.(((	chr16:89981287-89981553(+)$1	1	92	111	43.1111
(.((.((.(((((((.(((	chr5:1211845-1212101(+)$1	1	86	105	39.6851
.............((((((	chr7:6741933-6742177(-)$1	1	0	19	50.4259
.............(.((((	chr16:621223-621444(+)$1	1	6	25	50.4259
..................)	chr4:1653802-1654098(-)$1	1	63	82	38.1111
)))))))).))))))))..	chr17:3840037-3840314(-)$1	1	258	277	41.9074
.))................	chr4:946116-946380(+)$1	1	245	264	50.4259
(((.....(((((....))	chr1:11850810-11851087(-)$1	1	85	104	42.1851
.................))	chr7:76628112-76628386(+)$1	1	179	198	41.9074
.............((...(	chr15:22908681-22908940(+)$1	1	1	20	50.4259
...))).))))((((((((	chr10:104240332-104240617(-)$1	1	85	104	42.6481

#PSSM
u : 0.81	U : 0.09	C : 0.05	G : 0.01	g : 0.01	
g : 0.88	G : 0.09	u : 0.01	
u : 0.88	U : 0.07	A : 0.01	c : 0.01	
g : 0.90	G : 0.09	
u : 0.83	U : 0.05	c : 0.03	a : 0.03	C : 0.01	G : 0.01	
g : 0.87	G : 0.07	a : 0.01	U : 0.01	u : 0.01	
u : 0.79	U : 0.09	a : 0.05	c : 0.03	g : 0.01	
g : 0.90	G : 0.09	
u : 0.75	c : 0.12	U : 0.07	G : 0.01	a : 0.01	
g : 0.85	G : 0.09	a : 0.03	u : 0.01	
u : 0.87	U : 0.07	c : 0.01	a : 0.01	A : 0.01	
g : 0.83	G : 0.07	c : 0.03	a : 0.03	C : 0.01	
u : 0.77	c : 0.11	U : 0.07	A : 0.01	g : 0.01	
g : 0.85	G : 0.09	a : 0.03	c : 0.01	
u : 0.90	U : 0.09	
g : 0.88	G : 0.09	a : 0.01	
u : 0.90	U : 0.09	
g : 0.90	G : 0.09	
u : 0.64	c : 0.16	U : 0.05	a : 0.05	C : 0.03	A : 0.01	g : 0.01	

#score	2448.5555555555516
#seq	54
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_transcript_m3_run2.nuc.txt

#NT
CCUCC	chr11:67810644-67810936(+)$1	292	53	58	15.0000
CCUCC	chr1:26607537-26607766(+)$1	229	195	200	15.0000
ccucc	chr9:110051310-110051584(+)$1	274	17	22	15.0000
ccucc	chr6:68598034-68598324(-)$1	290	143	148	15.0000
CCUCC	chr1:155629771-155630048(-)$1	277	176	181	15.0000
CCUCC	chr8:22471563-22471853(+)$1	290	83	88	15.0000
CCUCC	chr2:97541554-97541833(-)$1	279	66	71	15.0000
CCUCC	chr20:61915179-61915405(+)$1	226	121	126	15.0000
CCUCC	chr1:87794659-87794954(+)$1	295	122	127	15.0000
CCUCC	chr11:67053377-67053619(+)$1	242	44	49	15.0000
ccucc	chrX:48651759-48652062(+)$1	303	67	72	15.0000
ccucc	chr16:89974688-89974991(+)$1	303	9	14	15.0000
CCUCC	chr7:5645411-5645619(+)$1	208	98	103	15.0000
ccucc	chr6:68598001-68598228(-)$1	227	47	52	15.0000
CCUCC	chr16:29818196-29818426(+)$1	230	149	154	15.0000
CCUCC	chr8:68255456-68255711(-)$1	255	60	65	15.0000
CCUCC	chr16:88872798-88873046(+)$1	248	105	110	15.0000
ccucc	chr1:227179496-227179801(-)$1	305	35	40	15.0000
CCUCC	chr1:150238466-150238771(-)$1	305	276	281	15.0000
CCUCC	chr19:1242354-1242631(+)$1	277	239	244	15.0000
CCUCC	chr16:30734953-30735290(+)$1	337	5	10	15.0000
CCUCC	chr19:48894660-48894909(-)$1	249	66	71	15.0000
ccucc	chr3:40351124-40351436(+)$1	312	116	121	15.0000
CCUCC	chr19:41132779-41133189(+)$1	410	18	23	15.0000
ccucc	chr17:27072505-27072797(+)$1	292	83	88	15.0000
CCUCC	chr1:160328125-160328403(+)$1	278	25	30	15.0000
CCUCC	chr1:207925421-207925751(+)$1	330	101	106	15.0000
CCUCC	chr8:128751056-128751335(+)$1	279	137	142	15.0000
CCUCC	chr1:15755486-15755766(+)$1	280	57	62	15.0000
ccucc	chr9:130880704-130881002(-)$1	298	7	12	15.0000
CCUCC	chr6:34213397-34213626(+)$1	229	111	116	15.0000
CCUCC	chr6:33372764-33373023(+)$1	259	97	102	15.0000
ccucc	chr4:77996927-77997144(-)$1	217	1	6	15.0000
CCUCC	chr16:28834448-28834694(+)$1	246	93	98	15.0000
ccucc	chr1:228400858-228401175(+)$1	317	25	30	15.0000
CCUCC	chr5:126860233-126860581(+)$1	348	22	27	15.0000
CCUCC	chrX:53406798-53407062(-)$1	264	51	56	15.0000
CCUCC	chr19:1394457-1394715(+)$1	258	33	38	15.0000
CCUCC	chr17:79826377-79826624(-)$1	247	1	6	15.0000
CCUCC	chr9:139756543-139756808(-)$1	265	190	195	15.0000
CCUCC	chr17:20946016-20946280(-)$1	264	1	6	15.0000
CCUCC	chr8:144810477-144810772(-)$1	295	122	127	15.0000
CCUCC	chr12:58215077-58215327(-)$1	250	91	96	15.0000
CCUCC	chr19:2732581-2732895(-)$1	314	277	282	15.0000
CCUCC	chr19:14203203-14203452(-)$1	249	104	109	15.0000
CCUCC	chr10:74033859-74034185(+)$1	326	152	157	15.0000
CCUCC	chr1:28793024-28793281(+)$1	257	36	41	15.0000
CCUCC	chr11:61067365-61067677(-)$1	312	97	102	15.0000
ccucc	chr20:47576000-47576269(+)$1	269	22	27	15.0000
ccucc	chr8:124222065-124222339(+)$1	274	141	146	15.0000
CCUCC	chr2:218705916-218706173(-)$1	257	106	111	15.0000
CCUCC	chr19:34890939-34891232(+)$1	293	20	25	15.0000
CCUCC	chr19:39964549-39964809(+)$1	260	254	259	15.0000
CCUCC	chr14:23596063-23596292(-)$1	229	189	194	15.0000
CCUCC	chr19:13251212-13251457(+)$1	245	123	128	15.0000
CCUCC	chr19:3053559-3053795(-)$1	236	176	181	15.0000
CCUCC	chr6:31604051-31604278(+)$1	227	76	81	15.0000
ccucc	chr20:57466364-57466676(+)$1	312	5	10	15.0000
CCUCC	chr19:34887384-34887651(+)$1	267	32	37	15.0000
CCUCC	chr6:29595963-29596270(-)$1	307	18	23	15.0000
CCUCC	chr6:89790506-89790762(+)$1	256	177	182	15.0000
CCUCC	chr19:1012118-1012443(-)$1	325	23	28	15.0000
ccucc	chr17:7417148-7417445(+)$1	297	232	237	15.0000
CCUCC	chr5:175954599-175954892(-)$1	293	75	80	15.0000
CCUCC	chr10:71161142-71161446(+)$1	304	105	110	15.0000
CCUCC	chr11:61183633-61183904(-)$1	271	44	49	15.0000
CCUCC	chr12:49444209-49444482(-)$1	273	61	66	15.0000
CCUCC	chr17:76121935-76122174(-)$1	239	200	205	15.0000
CCUCC	chr2:27263862-27264150(+)$1	288	29	34	15.0000
CCUCC	chr9:131008865-131009201(+)$1	336	8	13	15.0000
ccucc	chr7:127313945-127314231(+)$1	286	135	140	15.0000
CCUCC	chr19:1815197-1815457(-)$1	260	100	105	15.0000
CCUCC	chr5:10353801-10354037(+)$1	236	143	148	15.0000
CCUCC	chr1:32491176-32491484(+)$1	308	26	31	15.0000
CCUCC	chr7:29923560-29923921(+)$1	361	13	18	15.0000
CCUCC	chr10:11929498-11929791(-)$1	293	16	21	15.0000
CCUCC	chr11:203967-204239(-)$1	272	115	120	15.0000
CCUCC	chrX:53221553-53221868(-)$1	315	70	75	15.0000
CCUCC	chr20:61915969-61916255(+)$1	286	139	144	15.0000
CCUCC	chr19:1254242-1254516(+)$1	274	92	97	15.0000
CCUCC	chr11:2418285-2418622(+)$1	337	203	208	15.0000
CCUCC	chr21:46897593-46897885(+)$1	292	244	249	15.0000

#otherMatches

#Struct PSSM
eennn	chr1:154232330-154232596(+)$1	266	19	24	15.0000
gnnnn	chr11:67810644-67810936(+)$1	292	53	58	15.0000
d]bb0	chr1:26607537-26607766(+)$1	229	195	200	15.0000
:::::	chr9:110051310-110051584(+)$1	274	17	22	15.0000
:::::	chr6:68598034-68598324(-)$1	290	143	148	15.0000
CCC::	chr1:155629771-155630048(-)$1	277	176	181	15.0000
ggggg	chr8:22471563-22471853(+)$1	290	83	88	15.0000
GGGGM	chr2:97541554-97541833(-)$1	279	66	71	15.0000
:::::	chr20:61915179-61915405(+)$1	226	121	126	15.0000
GGGBB	chr1:87794659-87794954(+)$1	295	122	127	15.0000
dd999	chr11:67053377-67053619(+)$1	242	44	49	15.0000
:::::	chrX:48651759-48652062(+)$1	303	67	72	15.0000
:::::	chr16:89974688-89974991(+)$1	303	9	14	15.0000
cccbb	chr7:5645411-5645619(+)$1	208	98	103	15.0000
!a[bb	chr6:68598001-68598228(-)$1	227	47	52	15.0000
DCCC:	chr16:29818196-29818426(+)$1	230	149	154	15.0000
ppppp	chr8:68255456-68255711(-)$1	255	60	65	15.0000
eee:G	chr16:88872798-88873046(+)$1	248	105	110	15.0000
:::::	chr1:227179496-227179801(-)$1	305	35	40	15.0000
hhhhh	chr1:150238466-150238771(-)$1	305	276	281	15.0000
g22cc	chr19:1242354-1242631(+)$1	277	239	244	15.0000
:::::	chr16:30734953-30735290(+)$1	337	5	10	15.0000
44fff	chr19:48894660-48894909(-)$1	249	66	71	15.0000
IIYYB	chr3:40351124-40351436(+)$1	312	116	121	15.0000
hhhhh	chr19:41132779-41133189(+)$1	410	18	23	15.0000
GGGGG	chr17:27072505-27072797(+)$1	292	83	88	15.0000
PPPPP	chr1:160328125-160328403(+)$1	278	25	30	15.0000
dddhh	chr1:207925421-207925751(+)$1	330	101	106	15.0000
bb$$$	chr8:128751056-128751335(+)$1	279	137	142	15.0000
:::::	chr1:15755486-15755766(+)$1	280	57	62	15.0000
)))))	chr9:130880704-130881002(-)$1	298	7	12	15.0000
d[bbm	chr6:34213397-34213626(+)$1	229	111	116	15.0000
ddzzz	chr6:33372764-33373023(+)$1	259	97	102	15.0000
:::::	chr4:77996927-77997144(-)$1	217	1	6	15.0000
:::::	chr16:28834448-28834694(+)$1	246	93	98	15.0000
:::::	chr1:228400858-228401175(+)$1	317	25	30	15.0000
vvvvv	chr5:126860233-126860581(+)$1	348	22	27	15.0000
:::::	chrX:53406798-53407062(-)$1	264	51	56	15.0000
""eee	chr19:1394457-1394715(+)$1	258	33	38	15.0000
BKKBB	chr17:79826377-79826624(-)$1	247	1	6	15.0000
h::::	chr9:139756543-139756808(-)$1	265	190	195	15.0000
:::::	chr17:20946016-20946280(-)$1	264	1	6	15.0000
GGGGG	chr8:144810477-144810772(-)$1	295	122	127	15.0000
g[bb"	chr12:58215077-58215327(-)$1	250	91	96	15.0000
}GGGG	chr19:2732581-2732895(-)$1	314	277	282	15.0000
=====	chr19:14203203-14203452(-)$1	249	104	109	15.0000
EEEEE	chr10:74033859-74034185(+)$1	326	152	157	15.0000
:::::	chr1:28793024-28793281(+)$1	257	36	41	15.0000
llbb2	chr11:61067365-61067677(-)$1	312	97	102	15.0000
:::::	chr20:47576000-47576269(+)$1	269	22	27	15.0000
ffff]	chr8:124222065-124222339(+)$1	274	141	146	15.0000
+++++	chr2:218705916-218706173(-)$1	257	106	111	15.0000
:::HH	chr19:34890939-34891232(+)$1	293	20	25	15.0000
:::::	chr19:39964549-39964809(+)$1	260	254	259	15.0000
nnnnc	chr14:23596063-23596292(-)$1	229	189	194	15.0000
fff""	chr19:13251212-13251457(+)$1	245	123	128	15.0000
JJJJJ	chr19:3053559-3053795(-)$1	236	176	181	15.0000
fffff	chr6:31604051-31604278(+)$1	227	76	81	15.0000
FF:::	chr20:57466364-57466676(+)$1	312	5	10	15.0000
GGGGG	chr19:34887384-34887651(+)$1	267	32	37	15.0000
:::::	chr6:29595963-29596270(-)$1	307	18	23	15.0000
::::c	chr6:89790506-89790762(+)$1	256	177	182	15.0000
DD{DD	chr19:1012118-1012443(-)$1	325	23	28	15.0000
:::::	chr17:7417148-7417445(+)$1	297	232	237	15.0000
ggggg	chr5:175954599-175954892(-)$1	293	75	80	15.0000
fff::	chr10:71161142-71161446(+)$1	304	105	110	15.0000
:::::	chr11:61183633-61183904(-)$1	271	44	49	15.0000
(((((	chr12:49444209-49444482(-)$1	273	61	66	15.0000
E}CCC	chr17:76121935-76122174(-)$1	239	200	205	15.0000
cc^^^	chr2:27263862-27264150(+)$1	288	29	34	15.0000
PPPPP	chr9:131008865-131009201(+)$1	336	8	13	15.0000
^^^^^	chr7:127313945-127314231(+)$1	286	135	140	15.0000
]dddd	chr19:1815197-1815457(-)$1	260	100	105	15.0000
^^^^^	chr5:10353801-10354037(+)$1	236	143	148	15.0000
:::::	chr1:32491176-32491484(+)$1	308	26	31	15.0000
&&&&g	chr7:29923560-29923921(+)$1	361	13	18	15.0000
CC{A{	chr10:11929498-11929791(-)$1	293	16	21	15.0000
::fff	chr11:203967-204239(-)$1	272	115	120	15.0000
vvvvv	chrX:53221553-53221868(-)$1	315	70	75	15.0000
vvvvv	chr20:61915969-61916255(+)$1	286	139	144	15.0000
bxxxx	chr19:1254242-1254516(+)$1	274	92	97	15.0000
>>>>>	chr11:2418285-2418622(+)$1	337	203	208	15.0000
bbhhh	chr21:46897593-46897885(+)$1	292	244	249	15.0000

#DB
((...	chr1:154232330-154232596(+)$1	1	19	24	15.0000
(....	chr11:67810644-67810936(+)$1	1	53	58	15.0000
).)).	chr1:26607537-26607766(+)$1	1	195	200	15.0000
.....	chr9:110051310-110051584(+)$1	1	17	22	15.0000
.....	chr6:68598034-68598324(-)$1	1	143	148	15.0000
(((..	chr1:155629771-155630048(-)$1	1	176	181	15.0000
(((((	chr8:22471563-22471853(+)$1	1	83	88	15.0000
((((.	chr2:97541554-97541833(-)$1	1	66	71	15.0000
.....	chr20:61915179-61915405(+)$1	1	121	126	15.0000
(((((	chr1:87794659-87794954(+)$1	1	122	127	15.0000
))...	chr11:67053377-67053619(+)$1	1	44	49	15.0000
.....	chrX:48651759-48652062(+)$1	1	67	72	15.0000
.....	chr16:89974688-89974991(+)$1	1	9	14	15.0000
)))))	chr7:5645411-5645619(+)$1	1	98	103	15.0000
.(.((	chr6:68598001-68598228(-)$1	1	47	52	15.0000
)))).	chr16:29818196-29818426(+)$1	1	149	154	15.0000
.....	chr8:68255456-68255711(-)$1	1	60	65	15.0000
))).(	chr16:88872798-88873046(+)$1	1	105	110	15.0000
.....	chr1:227179496-227179801(-)$1	1	35	40	15.0000
)))))	chr1:150238466-150238771(-)$1	1	276	281	15.0000
)..))	chr19:1242354-1242631(+)$1	1	239	244	15.0000
.....	chr16:30734953-30735290(+)$1	1	5	10	15.0000
..)))	chr19:48894660-48894909(-)$1	1	66	71	15.0000
))..)	chr3:40351124-40351436(+)$1	1	116	121	15.0000
(((((	chr19:41132779-41133189(+)$1	1	18	23	15.0000
)))))	chr17:27072505-27072797(+)$1	1	83	88	15.0000
.....	chr1:160328125-160328403(+)$1	1	25	30	15.0000
(((((	chr1:207925421-207925751(+)$1	1	101	106	15.0000
((...	chr8:128751056-128751335(+)$1	1	137	142	15.0000
.....	chr1:15755486-15755766(+)$1	1	57	62	15.0000
.....	chr9:130880704-130881002(-)$1	1	7	12	15.0000
(.((.	chr6:34213397-34213626(+)$1	1	111	116	15.0000
((...	chr6:33372764-33373023(+)$1	1	97	102	15.0000
.....	chr4:77996927-77997144(-)$1	1	1	6	15.0000
.....	chr16:28834448-28834694(+)$1	1	93	98	15.0000
.....	chr1:228400858-228401175(+)$1	1	25	30	15.0000
.....	chr5:126860233-126860581(+)$1	1	22	27	15.0000
.....	chrX:53406798-53407062(-)$1	1	51	56	15.0000
..(((	chr19:1394457-1394715(+)$1	1	33	38	15.0000
(..((	chr17:79826377-79826624(-)$1	1	1	6	15.0000
)....	chr9:139756543-139756808(-)$1	1	190	195	15.0000
.....	chr17:20946016-20946280(-)$1	1	1	6	15.0000
(((((	chr8:144810477-144810772(-)$1	1	122	127	15.0000
(.((.	chr12:58215077-58215327(-)$1	1	91	96	15.0000
.))))	chr19:2732581-2732895(-)$1	1	277	282	15.0000
(((((	chr19:14203203-14203452(-)$1	1	104	109	15.0000
(((((	chr10:74033859-74034185(+)$1	1	152	157	15.0000
.....	chr1:28793024-28793281(+)$1	1	36	41	15.0000
..)).	chr11:61067365-61067677(-)$1	1	97	102	15.0000
.....	chr20:47576000-47576269(+)$1	1	22	27	15.0000
)))).	chr8:124222065-124222339(+)$1	1	141	146	15.0000
.....	chr2:218705916-218706173(-)$1	1	106	111	15.0000
...((	chr19:34890939-34891232(+)$1	1	20	25	15.0000
.....	chr19:39964549-39964809(+)$1	1	254	259	15.0000
....)	chr14:23596063-23596292(-)$1	1	189	194	15.0000
(((..	chr19:13251212-13251457(+)$1	1	123	128	15.0000
)))))	chr19:3053559-3053795(-)$1	1	176	181	15.0000
)))))	chr6:31604051-31604278(+)$1	1	76	81	15.0000
((...	chr20:57466364-57466676(+)$1	1	5	10	15.0000
(((((	chr19:34887384-34887651(+)$1	1	32	37	15.0000
.....	chr6:29595963-29596270(-)$1	1	18	23	15.0000
....(	chr6:89790506-89790762(+)$1	1	177	182	15.0000
((.((	chr19:1012118-1012443(-)$1	1	23	28	15.0000
.....	chr17:7417148-7417445(+)$1	1	232	237	15.0000
(((((	chr5:175954599-175954892(-)$1	1	75	80	15.0000
)))..	chr10:71161142-71161446(+)$1	1	105	110	15.0000
.....	chr11:61183633-61183904(-)$1	1	44	49	15.0000
.....	chr12:49444209-49444482(-)$1	1	61	66	15.0000
).)))	chr17:76121935-76122174(-)$1	1	200	205	15.0000
((...	chr2:27263862-27264150(+)$1	1	29	34	15.0000
.....	chr9:131008865-131009201(+)$1	1	8	13	15.0000
.....	chr7:127313945-127314231(+)$1	1	135	140	15.0000
.))))	chr19:1815197-1815457(-)$1	1	100	105	15.0000
.....	chr5:10353801-10354037(+)$1	1	143	148	15.0000
.....	chr1:32491176-32491484(+)$1	1	26	31	15.0000
....(	chr7:29923560-29923921(+)$1	1	13	18	15.0000
((.(.	chr10:11929498-11929791(-)$1	1	16	21	15.0000
..(((	chr11:203967-204239(-)$1	1	115	120	15.0000
.....	chrX:53221553-53221868(-)$1	1	70	75	15.0000
.....	chr20:61915969-61916255(+)$1	1	139	144	15.0000
(....	chr19:1254242-1254516(+)$1	1	92	97	15.0000
.....	chr11:2418285-2418622(+)$1	1	203	208	15.0000
)))))	chr21:46897593-46897885(+)$1	1	244	249	15.0000

#PSSM
C : 0.80	c : 0.19	
C : 0.80	c : 0.19	
U : 0.80	u : 0.19	
C : 0.80	c : 0.19	
C : 0.80	c : 0.19	

#score	1245.0000000000002
#seq	83
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_CDS_m1_run2.nuc.txt

#NT
cgcccccAGGCCUAAAUGUGCACAGCAUGCUCAAGCACCAGACGCUGGUCCUGACGCUGCCCACCGUCGCCUUCCUGGAGGACAAGCUGCUCUGGCAGGACUCACGUUACAGACCCCUCUACCCCUUCAGCCUGCCCUACAGCGACUUCCCCCGACCCCUACCCCACGCUACCCAGGGCCCAGCGGCCACCCCGUACCACUGUUGAUGUGAAGCACCUCUUCUGAGCCAGGCCGAGCCCCUGGCCGACUUGGGAGCCUCAGGCCCACGCCCACCCUUCGAGGAAGGUGUCACCUGGACCCCUUCAUUCCACGGAGGAAGCUGAGGCCACAGGGAGCGGCCAUCGCC	chr19:10370278-10370649(+)$1	371	5	351	498.0000

#otherMatches

#Struct PSSM
::FFFFFF::::::ffffff[dddd^^^^^^^^^^^^^^^^^^^^^dddd]ffffff:ffffff####a!!bb[ffffffammmma]ffffff]bb22a333ffffff:::::===========####cccssssssssssccc666666===========:::DDDDKKEEEEEKKDDDD{BBdddd[bb[dddd!!eeeee[a[a[ccc[gggggggmmmmggggggg333ccca]aeeeee]dddd666666bb]dddd::::ggggggg[annnnna]ggggggg::ffffffqqqqqqqqffffff::BBDDDDYYEEEEE}DDDDZZZFFFFFF::::::	chrX:153173017-153173370(-)$1	353	2	348	498.0000
FFFFFF:dddd%%%%%%ccc!!dddd!!a[ccc[a[eeeeellleeeeea]cccadddd22ccc4444dddd:::ccc[ccc"""dddd####ffffff[bb''''''''cccmmmmccc88888888bbffffff333dddd4444ccc]ccc::::::::DDDD:CCC{CCC{ADDDDDDDDCCCLLLCCCbb!!cccpppppppccc22bb::cccmmmmccc:::eeeeeooooooeeeee:::::CCC}CCC:::cccmmmmccc:::ffffff[cccccc[cccnnnnnccc]ccc4444ccc]ffffff::DDDD}DDDD}A}CCCCCCcccmmmmccc	chr19:10370278-10370649(+)$1	371	5	351	498.0000

#DB
..((((((......((((((.((((.....................)))).)))))).((((((....(..((.(((((((....).)))))).))..)...)))))).....(((((((((((....(((..........)))......)))))))))))...((((..(((((..((((.((((((.((.((((..(((((.(.(.(((.(((((((....)))))))...)))).)))))).))))......)).))))....(((((((.(.....).)))))))..((((((........))))))..))))))..))))).))))...))))))......	chrX:153173017-153173370(-)$1	1	2	348	498.0000
((((((.((((......(((..((((..(.(((.(.(((((...)))))).))))))))..)))....))))...(((.(((...((((....((((((.((........(((....)))........))))))))...))))....))).)))........((((.(((.(((.((((((((((((...(((((..(((.......)))..))..(((....)))...(((((......))))).....))).)))...(((....)))...((((((.((((((.(((.....))).)))....))).))))))..)))).)))).).))))))(((....)))	chr19:10370278-10370649(+)$1	1	5	351	498.0000

#PSSM
A : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	c : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	

#score	996.0
#seq	2
#width	346
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_UTR_m1_run2.nuc.txt

#NT
GAAGA	chr21:27253839-27254092(-)$1	253	195	200	14.9999
GAAGA	chr5:179146567-179146779(+)$1	212	105	110	14.9999
gaaga	chr17:43158904-43159189(+)$1	285	143	148	14.9999
GAAGA	chr3:187447033-187447286(-)$1	253	0	5	14.9999
GAAGA	chr20:16488511-16488825(-)$1	314	118	123	14.9999
GAAGA	chr3:145838797-145839032(-)$1	235	12	17	14.9999
GAAGA	chr17:27420237-27420531(-)$1	294	113	118	14.9999
GAAGA	chr13:76374719-76374994(+)$1	275	106	111	14.9999
GAAGA	chr7:100780765-100780997(+)$1	232	10	15	14.9999
GAAGA	chr6:56416922-56417181(-)$1	259	41	46	14.9999
GAAGA	chr12:53428292-53428600(+)$1	308	122	127	14.9999
GAAGA	chr20:34292489-34292713(-)$1	224	172	177	14.9999
GAAGA	chr6:56380147-56380451(-)$1	304	5	10	14.9999
GAAGA	chr10:79793524-79793757(+)$1	233	118	123	14.9999
GAAGA	chr14:31869492-31869787(-)$1	295	89	94	14.9999
GAAGA	chr6:126317021-126317286(+)$1	265	121	126	14.9999
GAAGA	chr14:20924727-20924981(+)$1	254	108	113	14.9999
GAAGA	chr8:27467942-27468196(-)$1	254	113	118	14.9999
GAAGA	chr11:720955-721226(+)$1	271	120	125	14.9999
GAAGA	chr2:27898369-27898651(+)$1	282	58	63	14.9999
GAAGA	chr8:124381289-124381516(-)$1	227	18	23	14.9999
GAAGA	chr9:710928-711195(+)$1	267	29	34	14.9999
GAAGA	chr5:179146639-179146882(+)$1	243	33	38	14.9999
GAAGA	chr9:123292267-123292519(-)$1	252	10	15	14.9999
GAAGA	chr12:76444210-76444456(-)$1	246	128	133	14.9999
GAAGA	chr1:46125766-46126097(-)$1	331	273	278	14.9999
GAAGA	chr16:89348943-89349166(-)$1	223	69	74	14.9999
GAAGA	chr7:27824716-27824996(+)$1	280	104	109	14.9999
GAAGA	chr12:76449711-76449985(-)$1	274	71	76	14.9999
gaaga	chr8:17504458-17504691(-)$1	233	157	162	14.9999
GAAGA	chr8:19687815-19688165(+)$1	350	113	118	14.9999
GAAGA	chr4:3520496-3520729(-)$1	233	13	18	14.9999
GAAGA	chr19:15383822-15384045(-)$1	223	111	116	14.9999
GAAGA	chr20:34293046-34293267(-)$1	221	16	21	14.9999
GAAGA	chr3:186503570-186503860(+)$1	290	258	263	14.9999
GAAGA	chr20:29623033-29623305(+)$1	272	237	242	14.9999
GAAGA	chr20:34302115-34302355(-)$1	240	105	110	14.9999
GAAGA	chr12:104327654-104327871(+)$1	217	90	95	14.9999
GAAGA	chr15:58913577-58913854(-)$1	277	78	83	14.9999
GAAGA	chr7:155534552-155534835(+)$1	283	224	229	14.9999
GAAGA	chr7:100770345-100770574(+)$1	229	77	82	14.9999
GAAGA	chr2:162061085-162061413(+)$1	328	129	134	14.9999
GAAGA	chr2:201253844-201254106(+)$1	262	32	37	14.9999
GAAGA	chr2:162036028-162036378(+)$1	350	137	142	14.9999
GAAGA	chr2:75745096-75745442(-)$1	346	107	112	14.9999
GAAGA	chr6:99862375-99862637(-)$1	262	67	72	14.9999
GAAGA	chr6:167365922-167366137(-)$1	215	208	213	14.9999
GAAGA	chr9:37588634-37589030(-)$1	396	134	139	14.9999
GAAGA	chr11:118888060-118888293(-)$1	233	169	174	14.9999
GAAGA	chr7:100770374-100770608(+)$1	234	48	53	14.9999
GAAGA	chr9:117359855-117360169(+)$1	314	47	52	14.9999
GAAGA	chr11:129979373-129979597(+)$1	224	97	102	14.9999
GAAGA	chr17:27417450-27417707(-)$1	257	119	124	14.9999
GAAGA	chr12:108920178-108920431(-)$1	253	51	56	14.9999
GAAGA	chr2:201717991-201718273(-)$1	282	229	234	14.9999
GAAGA	chr2:216230242-216230452(-)$1	210	7	12	14.9999
GAAGA	chr17:41154631-41154900(+)$1	269	161	166	14.9999
GAAGA	chr1:19440203-19440421(-)$1	218	33	38	14.9999
GAAGA	chr1:92200254-92200606(-)$1	352	150	155	14.9999
GAAGA	chr8:117656989-117657323(-)$1	334	143	148	14.9999
GAAGA	chr17:48818917-48819144(+)$1	227	124	129	14.9999
GAAGA	chr8:17829945-17830230(+)$1	285	50	55	14.9999
GAAGA	chr4:39329053-39329354(-)$1	301	32	37	14.9999
GAAGA	chr6:43752404-43752640(+)$1	236	50	55	14.9999
GAAGA	chr6:30545805-30546082(+)$1	277	82	87	14.9999
gaaga	chr16:89348370-89348675(-)$1	305	99	104	14.9999
GAAGA	chr6:4060740-4060983(+)$1	243	117	122	14.9999
GAAGA	chr2:179982156-179982440(-)$1	284	104	109	14.9999
GAAGA	chr1:8073675-8073999(-)$1	324	71	76	14.9999
GAAGA	chr2:110332073-110332407(-)$1	334	115	120	14.9999

#otherMatches

#Struct PSSM
IIIII	chr14:39648309-39648530(+)$1	221	30	35	14.9999
:::ee	chr21:27253839-27254092(-)$1	253	195	200	14.9999
sssss	chr5:179146567-179146779(+)$1	212	105	110	14.9999
5bb]f	chr17:43158904-43159189(+)$1	285	143	148	14.9999
:::CC	chr3:187447033-187447286(-)$1	253	0	5	14.9999
:::FF	chr20:16488511-16488825(-)$1	314	118	123	14.9999
FFFFC	chr3:145838797-145839032(-)$1	235	12	17	14.9999
qqqqc	chr17:27420237-27420531(-)$1	294	113	118	14.9999
fffff	chr13:76374719-76374994(+)$1	275	106	111	14.9999
ttttt	chr7:100780765-100780997(+)$1	232	10	15	14.9999
:::GG	chr6:56416922-56417181(-)$1	259	41	46	14.9999
ee:::	chr12:53428292-53428600(+)$1	308	122	127	14.9999
GGGGG	chr20:34292489-34292713(-)$1	224	172	177	14.9999
JJJJJ	chr6:56380147-56380451(-)$1	304	5	10	14.9999
emmmm	chr10:79793524-79793757(+)$1	233	118	123	14.9999
fffff	chr14:31869492-31869787(-)$1	295	89	94	14.9999
%%%ee	chr6:126317021-126317286(+)$1	265	121	126	14.9999
hhhh:	chr14:20924727-20924981(+)$1	254	108	113	14.9999
::::F	chr8:27467942-27468196(-)$1	254	113	118	14.9999
d7777	chr11:720955-721226(+)$1	271	120	125	14.9999
f]fff	chr2:27898369-27898651(+)$1	282	58	63	14.9999
ggggg	chr8:124381289-124381516(-)$1	227	18	23	14.9999
c::DD	chr9:710928-711195(+)$1	267	29	34	14.9999
sssss	chr5:179146639-179146882(+)$1	243	33	38	14.9999
ppeee	chr9:123292267-123292519(-)$1	252	10	15	14.9999
eeeee	chr12:76444210-76444456(-)$1	246	128	133	14.9999
qqqqq	chr1:46125766-46126097(-)$1	331	273	278	14.9999
e::HH	chr16:89348943-89349166(-)$1	223	69	74	14.9999
cc]dd	chr7:27824716-27824996(+)$1	280	104	109	14.9999
HHHHH	chr12:76449711-76449985(-)$1	274	71	76	14.9999
____F	chr8:17504458-17504691(-)$1	233	157	162	14.9999
ddd22	chr8:19687815-19688165(+)$1	350	113	118	14.9999
:::::	chr4:3520496-3520729(-)$1	233	13	18	14.9999
ffwww	chr19:15383822-15384045(-)$1	223	111	116	14.9999
offff	chr20:34293046-34293267(-)$1	221	16	21	14.9999
cc[ee	chr3:186503570-186503860(+)$1	290	258	263	14.9999
77ccc	chr20:29623033-29623305(+)$1	272	237	242	14.9999
:::gg	chr20:34302115-34302355(-)$1	240	105	110	14.9999
b[bbl	chr12:104327654-104327871(+)$1	217	90	95	14.9999
ii:::	chr15:58913577-58913854(-)$1	277	78	83	14.9999
ppppc	chr7:155534552-155534835(+)$1	283	224	229	14.9999
^^^^^	chr7:100770345-100770574(+)$1	229	77	82	14.9999
ccc]e	chr2:162061085-162061413(+)$1	328	129	134	14.9999
D::::	chr2:201253844-201254106(+)$1	262	32	37	14.9999
22eee	chr2:162036028-162036378(+)$1	350	137	142	14.9999
ccc]a	chr2:75745096-75745442(-)$1	346	107	112	14.9999
eee]d	chr6:99862375-99862637(-)$1	262	67	72	14.9999
]ccc:	chr6:167365922-167366137(-)$1	215	208	213	14.9999
BBKKB	chr9:37588634-37589030(-)$1	396	134	139	14.9999
hh22c	chr11:118888060-118888293(-)$1	233	169	174	14.9999
^^^^^	chr7:100770374-100770608(+)$1	234	48	53	14.9999
(((((	chr9:117359855-117360169(+)$1	314	47	52	14.9999
dddd]	chr11:129979373-129979597(+)$1	224	97	102	14.9999
h4444	chr17:27417450-27417707(-)$1	257	119	124	14.9999
=====	chr12:108920178-108920431(-)$1	253	51	56	14.9999
ggggg	chr2:201717991-201718273(-)$1	282	229	234	14.9999
{EEEE	chr2:216230242-216230452(-)$1	210	7	12	14.9999
iiiii	chr17:41154631-41154900(+)$1	269	161	166	14.9999
cmmmm	chr1:19440203-19440421(-)$1	218	33	38	14.9999
cc]ee	chr1:92200254-92200606(-)$1	352	150	155	14.9999
GGGGE	chr8:117656989-117657323(-)$1	334	143	148	14.9999
=====	chr17:48818917-48819144(+)$1	227	124	129	14.9999
c::dd	chr8:17829945-17830230(+)$1	285	50	55	14.9999
F{FFF	chr4:39329053-39329354(-)$1	301	32	37	14.9999
eeddd	chr6:43752404-43752640(+)$1	236	50	55	14.9999
JJJJJ	chr6:30545805-30546082(+)$1	277	82	87	14.9999
^^^^^	chr16:89348370-89348675(-)$1	305	99	104	14.9999
gggg8	chr6:4060740-4060983(+)$1	243	117	122	14.9999
b::::	chr2:179982156-179982440(-)$1	284	104	109	14.9999
EEEE:	chr1:8073675-8073999(-)$1	324	71	76	14.9999
ccbb2	chr2:110332073-110332407(-)$1	334	115	120	14.9999

#DB
(((((	chr14:39648309-39648530(+)$1	1	30	35	14.9999
...((	chr21:27253839-27254092(-)$1	1	195	200	14.9999
.....	chr5:179146567-179146779(+)$1	1	105	110	14.9999
.)).)	chr17:43158904-43159189(+)$1	1	143	148	14.9999
...((	chr3:187447033-187447286(-)$1	1	0	5	14.9999
...((	chr20:16488511-16488825(-)$1	1	118	123	14.9999
(((((	chr3:145838797-145839032(-)$1	1	12	17	14.9999
....)	chr17:27420237-27420531(-)$1	1	113	118	14.9999
)))))	chr13:76374719-76374994(+)$1	1	106	111	14.9999
.....	chr7:100780765-100780997(+)$1	1	10	15	14.9999
...((	chr6:56416922-56417181(-)$1	1	41	46	14.9999
))...	chr12:53428292-53428600(+)$1	1	122	127	14.9999
)))))	chr20:34292489-34292713(-)$1	1	172	177	14.9999
(((((	chr6:56380147-56380451(-)$1	1	5	10	14.9999
(....	chr10:79793524-79793757(+)$1	1	118	123	14.9999
(((((	chr14:31869492-31869787(-)$1	1	89	94	14.9999
...((	chr6:126317021-126317286(+)$1	1	121	126	14.9999
)))).	chr14:20924727-20924981(+)$1	1	108	113	14.9999
....(	chr8:27467942-27468196(-)$1	1	113	118	14.9999
)....	chr11:720955-721226(+)$1	1	120	125	14.9999
).)))	chr2:27898369-27898651(+)$1	1	58	63	14.9999
(((((	chr8:124381289-124381516(-)$1	1	18	23	14.9999
)..((	chr9:710928-711195(+)$1	1	29	34	14.9999
.....	chr5:179146639-179146882(+)$1	1	33	38	14.9999
..)))	chr9:123292267-123292519(-)$1	1	10	15	14.9999
)))))	chr12:76444210-76444456(-)$1	1	128	133	14.9999
.....	chr1:46125766-46126097(-)$1	1	273	278	14.9999
)..((	chr16:89348943-89349166(-)$1	1	69	74	14.9999
)).))	chr7:27824716-27824996(+)$1	1	104	109	14.9999
(((((	chr12:76449711-76449985(-)$1	1	71	76	14.9999
....)	chr8:17504458-17504691(-)$1	1	157	162	14.9999
)))..	chr8:19687815-19688165(+)$1	1	113	118	14.9999
.....	chr4:3520496-3520729(-)$1	1	13	18	14.9999
((...	chr19:15383822-15384045(-)$1	1	111	116	14.9999
.))))	chr20:34293046-34293267(-)$1	1	16	21	14.9999
((.((	chr3:186503570-186503860(+)$1	1	258	263	14.9999
..)))	chr20:29623033-29623305(+)$1	1	237	242	14.9999
...((	chr20:34302115-34302355(-)$1	1	105	110	14.9999
(.((.	chr12:104327654-104327871(+)$1	1	90	95	14.9999
))...	chr15:58913577-58913854(-)$1	1	78	83	14.9999
....)	chr7:155534552-155534835(+)$1	1	224	229	14.9999
.....	chr7:100770345-100770574(+)$1	1	77	82	14.9999
))).)	chr2:162061085-162061413(+)$1	1	129	134	14.9999
(....	chr2:201253844-201254106(+)$1	1	32	37	14.9999
..)))	chr2:162036028-162036378(+)$1	1	137	142	14.9999
))).)	chr2:75745096-75745442(-)$1	1	107	112	14.9999
))).)	chr6:99862375-99862637(-)$1	1	67	72	14.9999
.))).	chr6:167365922-167366137(-)$1	1	208	213	14.9999
((..(	chr9:37588634-37589030(-)$1	1	134	139	14.9999
))..)	chr11:118888060-118888293(-)$1	1	169	174	14.9999
.....	chr7:100770374-100770608(+)$1	1	48	53	14.9999
.....	chr9:117359855-117360169(+)$1	1	47	52	14.9999
)))).	chr11:129979373-129979597(+)$1	1	97	102	14.9999
)....	chr17:27417450-27417707(-)$1	1	119	124	14.9999
(((((	chr12:108920178-108920431(-)$1	1	51	56	14.9999
)))))	chr2:201717991-201718273(-)$1	1	229	234	14.9999
.((((	chr2:216230242-216230452(-)$1	1	7	12	14.9999
(((((	chr17:41154631-41154900(+)$1	1	161	166	14.9999
(....	chr1:19440203-19440421(-)$1	1	33	38	14.9999
)).))	chr1:92200254-92200606(-)$1	1	150	155	14.9999
(((((	chr8:117656989-117657323(-)$1	1	143	148	14.9999
)))))	chr17:48818917-48819144(+)$1	1	124	129	14.9999
)..((	chr8:17829945-17830230(+)$1	1	50	55	14.9999
(.(((	chr4:39329053-39329354(-)$1	1	32	37	14.9999
))(((	chr6:43752404-43752640(+)$1	1	50	55	14.9999
)))))	chr6:30545805-30546082(+)$1	1	82	87	14.9999
.....	chr16:89348370-89348675(-)$1	1	99	104	14.9999
)))).	chr6:4060740-4060983(+)$1	1	117	122	14.9999
)....	chr2:179982156-179982440(-)$1	1	104	109	14.9999
((((.	chr1:8073675-8073999(-)$1	1	71	76	14.9999
)))).	chr2:110332073-110332407(-)$1	1	115	120	14.9999

#PSSM
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	

#score	1064.9999999999998
#seq	71
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_CDS_m2_run1.nuc.txt

#NT
GGCGGCAGAAGCGGCGUCG	chr7:39990385-39990603(+)$1	218	156	175	29.8409
GGCGACGGCGGCGGUAGCG	chr7:72992532-72992817(-)$1	285	3	22	30.0681
ggcggcggcugcggcgggg	chr2:220042895-220043178(+)$1	283	158	177	35.0681
GGCGGCAGAAGCGGCGUCG	chr7:39990403-39990620(+)$1	217	138	157	29.8409
GGCGUcggccccgccggcc	chr16:476002-476226(+)$1	224	6	25	24.3863
GGCGGCGGCGGCGACUGCG	chr1:43148822-43149060(+)$1	238	88	107	33.8181
GCCGGCAGCGGCGGCGCCA	chr1:150551719-150551941(-)$1	222	1	20	26.8863
GGCUGCGGCGGCGGCGGCG	chrX:109560905-109561214(-)$1	309	137	156	37.7954
gggcggggccgcggggccg	chr2:27435153-27435436(+)$1	283	28	47	20.9772
ggcggcggccgcggcugcu	chr4:15656785-15657067(-)$1	282	114	133	32.2272
gggggcggcagcggcggcg	chr12:58149386-58149626(-)$1	240	49	68	36.0909
GGCAGCUCCCGCGGCAGCG	chr1:1334368-1334654(-)$1	286	6	25	24.7272
GGCGUcggccccgccggcc	chr16:475951-476172(+)$1	221	57	76	24.3863
ggcggcggcggcggcggcg	chr7:96635263-96635546(-)$1	283	99	118	41.6590
GGCGUcggccccgccggcc	chr16:475937-476151(+)$1	214	71	90	24.3863
ggcggaggcggaggcggcg	chr22:21212863-21213070(-)$1	207	87	106	33.8181
GGCGGCUGCGGCUGCGGCG	chr2:32582272-32582525(+)$1	253	43	62	34.7272
ggccgccgccgccgccgcc	chr7:4722044-4722357(+)$1	313	46	65	21.3181
GGCGGCAGAAGCGGCGUCG	chr7:39990420-39990644(+)$1	224	121	140	29.8409
AGAGGCGGCGACGGUGGCG	chr22:38902121-38902348(-)$1	227	162	181	25.1818
ggcggcggcggcggcggcg	chr4:22517153-22517380(-)$1	227	60	79	41.6590
gcgcggggcggcgggggcg	chr11:71935947-71936225(+)$1	278	37	56	22.9090
ggcggcggcggcggcggcg	chr4:22517249-22517467(-)$1	218	147	166	41.6590
GGCGGCUGCGGCUGCGGCG	chr2:32582190-32582445(+)$1	255	125	144	34.7272
GGCCGUGGCUGAGGGGGCG	chr19:46388362-46388641(-)$1	279	40	59	23.8181
GGCGGCUGCGGCUGCGGCG	chr2:32582245-32582472(+)$1	227	70	89	34.7272
GGCGGCGGUGGCGGCGGAG	chr3:52489566-52489844(+)$1	278	64	83	33.4772
ggcggcggcggcggcagcg	chr17:46985948-46986222(+)$1	274	54	73	38.0227
GGCGGCAGAAGCGGCGUCG	chr7:39990444-39990679(+)$1	235	97	116	29.8409
Agcggcggcggcggugggg	chr9:139137388-139137624(-)$1	236	94	113	29.7272
GCCGGCUGGAGCAGCGGCC	chr3:98451554-98451848(+)$1	294	182	201	21.3181
GGCGUcggccccgccggcc	chr16:475972-476183(+)$1	211	36	55	24.3863
Agcggcggcggcggugggg	chr9:139137424-139137635(-)$1	211	105	124	29.7272
ggccgcggcggcggcggcg	chr20:3451908-3452141(+)$1	233	91	110	38.1363
GGCGGGGACGGGGGAGGGG	chr16:31510627-31510850(-)$1	223	46	65	21.3181
ggcggcggcggcggcggcg	chr4:22517180-22517449(-)$1	269	129	148	41.6590
ggcggcggcggcggcggcg	chr1:1334456-1334754(-)$1	298	70	89	41.6590
gggggcggcagcggcggcg	chr12:58149337-58149582(-)$1	245	5	24	36.0909
ggcggaggcggaggcggcg	chr22:21212813-21213063(-)$1	250	80	99	33.8181
ggcggcgauggcggcggcg	chr16:2264600-2264868(-)$1	268	83	102	33.3636
GAGGGCGGCAGAGGCUGCG	chr11:64948429-64948695(-)$1	266	201	220	24.3863
ggcggcggcgguggccgcg	chr7:139876520-139876783(-)$1	263	57	76	33.7045
GCCUGGUGCGGCGGCUGCG	chr15:65425419-65425706(-)$1	287	134	153	23.7045

#otherMatches

#Struct PSSM
ffffffCCC}FFFFFFYYA	chr7:39990346-39990585(+)$1	239	195	214	29.8409
ffffff]a22ffffff22d	chr7:39990385-39990603(+)$1	218	156	175	29.8409
EEEEE{CCC{CCC:::fff	chr7:72992532-72992817(-)$1	285	3	22	30.0681
nnnna]a]ffffff]gggg	chr2:220042895-220043178(+)$1	283	158	177	35.0681
ffffff]a22ffffff22d	chr7:39990403-39990620(+)$1	217	138	157	29.8409
b[a[ggggggg!!ffffff	chr16:476002-476226(+)$1	224	6	25	24.3863
cc!!dddd[ccc[bblllb	chr1:43148822-43149060(+)$1	238	88	107	33.8181
CCCCCC{EEEEE{DDDD{D	chr1:150551719-150551941(-)$1	222	1	20	26.8863
dddd[ccc[bb[=======	chrX:109560905-109561214(-)$1	309	137	156	37.7954
JJJJJJJJKKGGGGGGGGG	chr2:27435153-27435436(+)$1	283	28	47	20.9772
gg!!bb[a[ccc[ffffff	chr4:15656785-15657067(-)$1	282	114	133	32.2272
hhhh[dddd[iiiiiiiii	chr12:58149386-58149626(-)$1	240	49	68	36.0909
GGKKDDDDKKEEEEE{CCC	chr1:1334368-1334654(-)$1	286	6	25	24.7272
eeeeeffffff!!ffffff	chr16:475951-476172(+)$1	221	57	76	24.3863
===================	chr7:96635263-96635546(-)$1	283	99	118	41.6590
eeeeeffffff!!ffffff	chr16:475937-476151(+)$1	214	71	90	24.3863
d[eeeee[eeeee[ddddm	chr22:21212863-21213070(-)$1	207	87	106	33.8181
ccc[eeeeemmmmeeeee]	chr2:32582272-32582525(+)$1	253	43	62	34.7272
ccc[hhhhhhhh[gggggg	chr7:4722044-4722357(+)$1	313	46	65	21.3181
ffffff]a22ffffff22d	chr7:39990420-39990644(+)$1	224	121	140	29.8409
ccc[bb[bbmmmmbb]bb]	chr22:38902121-38902348(-)$1	227	162	181	25.1818
c=================:	chr4:22517153-22517380(-)$1	227	60	79	41.6590
cc22eeeeeBB{FFFFFF{	chr11:71935947-71936225(+)$1	278	37	56	22.9090
chhhhhhhhiiiiiiiiib	chr4:22517249-22517467(-)$1	218	147	166	41.6590
:eeeeemmmmeeeee:FFF	chr2:32582190-32582445(+)$1	255	125	144	34.7272
:cccffffff[hhhhhhhh	chr19:46388362-46388641(-)$1	279	40	59	23.8181
ccc[eeeeemmmmeeeee]	chr2:32582245-32582472(+)$1	227	70	89	34.7272
[bbmmmmbb22eeeee]dd	chr3:52489566-52489844(+)$1	278	64	83	33.4772
JJJJJJJJJ:bbqqqqqqq	chr17:46985948-46986222(+)$1	274	54	73	38.0227
ggggggeeeeeffffff!!	chr7:39990444-39990679(+)$1	235	97	116	29.8409
iiiiii]hhhhhhhh]aHH	chr9:139137388-139137624(-)$1	236	94	113	29.7272
=========bb[bb[eeee	chr3:98451554-98451848(+)$1	294	182	201	21.3181
cc]bbffffff!!ffffff	chr16:475972-476183(+)$1	211	36	55	24.3863
ccc]hhhhhhhh]ccc]dd	chr9:139137424-139137635(-)$1	211	105	124	29.7272
ccc]===============	chr20:3451908-3452141(+)$1	233	91	110	38.1363
ee[dddd[ffffff!!eee	chr16:31510627-31510850(-)$1	223	46	65	21.3181
c==================	chr4:22517180-22517449(-)$1	269	129	148	41.6590
b]bb]dddd22a22dddde	chr1:1334456-1334754(-)$1	298	70	89	41.6590
iiii[dddd[iiiiiiiii	chr12:58149337-58149582(-)$1	245	5	24	36.0909
d[eeeee[eeeee[ddddm	chr22:21212813-21213063(-)$1	250	80	99	33.8181
[ddddccchhhhhhhhccc	chr16:2264600-2264868(-)$1	268	83	102	33.3636
hhhhh[ccc####ddddao	chr11:64948429-64948695(-)$1	266	201	220	24.3863
dd[hhhhhhhh[ccc!!dd	chr7:139876520-139876783(-)$1	263	57	76	33.7045
eeeee]eeeee]bbbbddd	chr15:65425419-65425706(-)$1	287	134	153	23.7045

#DB
))))))))).))))))..)	chr7:39990346-39990585(+)$1	1	195	214	29.8409
)))))).)..))))))..)	chr7:39990385-39990603(+)$1	1	156	175	29.8409
(((((.(((.(((...(((	chr7:72992532-72992817(-)$1	1	3	22	30.0681
....).).)))))).))))	chr2:220042895-220043178(+)$1	1	158	177	35.0681
)))))).)..))))))..)	chr7:39990403-39990620(+)$1	1	138	157	29.8409
(.(.(((((((..((((((	chr16:476002-476226(+)$1	1	6	25	24.3863
((..((((.(((.((...)	chr1:43148822-43149060(+)$1	1	88	107	33.8181
((((((.(((((.((((.(	chr1:150551719-150551941(-)$1	1	1	20	26.8863
((((.(((.((.(((((((	chrX:109560905-109561214(-)$1	1	137	156	37.7954
((((((((..(((((((((	chr2:27435153-27435436(+)$1	1	28	47	20.9772
((..((.(.(((.((((((	chr4:15656785-15657067(-)$1	1	114	133	32.2272
((((.((((.(((((((((	chr12:58149386-58149626(-)$1	1	49	68	36.0909
((..((((..(((((.(((	chr1:1334368-1334654(-)$1	1	6	25	24.7272
)))))((((((..((((((	chr16:475951-476172(+)$1	1	57	76	24.3863
(((((((((((((((((((	chr7:96635263-96635546(-)$1	1	99	118	41.6590
)))))((((((..((((((	chr16:475937-476151(+)$1	1	71	90	24.3863
(.(((((.(((((.((((.	chr22:21212863-21213070(-)$1	1	87	106	33.8181
(((.(((((....))))).	chr2:32582272-32582525(+)$1	1	43	62	34.7272
(((.((((((((.((((((	chr7:4722044-4722357(+)$1	1	46	65	21.3181
)))))).)..))))))..)	chr7:39990420-39990644(+)$1	1	121	140	29.8409
(((.((.((....)).)).	chr22:38902121-38902348(-)$1	1	162	181	25.1818
)))))))))))))))))).	chr4:22517153-22517380(-)$1	1	60	79	41.6590
))..)))))((.((((((.	chr11:71935947-71936225(+)$1	1	37	56	22.9090
)))))))))))))))))))	chr4:22517249-22517467(-)$1	1	147	166	41.6590
.(((((....))))).(((	chr2:32582190-32582445(+)$1	1	125	144	34.7272
.(((((((((.((((((((	chr19:46388362-46388641(-)$1	1	40	59	23.8181
(((.(((((....))))).	chr2:32582245-32582472(+)$1	1	70	89	34.7272
.((....))..))))).))	chr3:52489566-52489844(+)$1	1	64	83	33.4772
(((((((((.((.......	chr17:46985948-46986222(+)$1	1	54	73	38.0227
(((((((((((((((((..	chr7:39990444-39990679(+)$1	1	97	116	29.8409
)))))).)))))))).)((	chr9:139137388-139137624(-)$1	1	94	113	29.7272
(((((((((((.((.((((	chr3:98451554-98451848(+)$1	1	182	201	21.3181
)).))((((((..((((((	chr16:475972-476183(+)$1	1	36	55	24.3863
))).)))))))).))).))	chr9:139137424-139137635(-)$1	1	105	124	29.7272
))).)))))))))))))))	chr20:3451908-3452141(+)$1	1	91	110	38.1363
((.((((.((((((..(((	chr16:31510627-31510850(-)$1	1	46	65	21.3181
)))))))))))))))))))	chr4:22517180-22517449(-)$1	1	129	148	41.6590
).)).))))..)..))))(	chr1:1334456-1334754(-)$1	1	70	89	41.6590
((((.((((.(((((((((	chr12:58149337-58149582(-)$1	1	5	24	36.0909
(.(((((.(((((.((((.	chr22:21212813-21213063(-)$1	1	80	99	33.8181
.((((((((((((((((((	chr16:2264600-2264868(-)$1	1	83	102	33.3636
(((((.(((....(((((.	chr11:64948429-64948695(-)$1	1	201	220	24.3863
((.((((((((.(((..((	chr7:139876520-139876783(-)$1	1	57	76	33.7045
))))).))))).)))))))	chr15:65425419-65425706(-)$1	1	134	153	23.7045

#PSSM
G : 0.52	g : 0.40	A : 0.06	
G : 0.45	g : 0.43	C : 0.06	c : 0.02	A : 0.02	
C : 0.49	c : 0.36	g : 0.09	A : 0.02	G : 0.02	
G : 0.45	g : 0.36	c : 0.09	U : 0.04	A : 0.02	C : 0.02	
g : 0.45	G : 0.43	U : 0.09	A : 0.02	
c : 0.45	C : 0.38	g : 0.04	a : 0.04	G : 0.04	U : 0.02	
g : 0.52	G : 0.18	A : 0.13	U : 0.13	c : 0.02	
g : 0.52	G : 0.40	C : 0.02	A : 0.02	a : 0.02	
c : 0.52	C : 0.29	A : 0.11	U : 0.02	G : 0.02	u : 0.02	
g : 0.31	G : 0.25	A : 0.15	c : 0.15	a : 0.04	u : 0.02	C : 0.02	U : 0.02	
g : 0.45	G : 0.43	c : 0.09	A : 0.02	
c : 0.47	C : 0.38	a : 0.04	A : 0.04	G : 0.02	u : 0.02	
g : 0.52	G : 0.36	U : 0.06	c : 0.02	A : 0.02	
g : 0.45	G : 0.43	c : 0.09	A : 0.02	
c : 0.45	C : 0.36	U : 0.04	g : 0.04	u : 0.04	G : 0.02	A : 0.02	
g : 0.45	G : 0.34	U : 0.06	A : 0.04	c : 0.04	u : 0.02	a : 0.02	
g : 0.52	G : 0.31	U : 0.11	C : 0.02	c : 0.02	
c : 0.47	C : 0.40	g : 0.06	A : 0.02	G : 0.02	
G : 0.40	g : 0.40	c : 0.11	A : 0.02	u : 0.02	C : 0.02	

#score	1360.727272727271
#seq	44
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_CDS_m2_run2.nuc.txt

#NT
UGAAAUUUAGUUGUUU	chr13:45007957-45008213(-)$1	256	166	182	17.5000
AUUAAUAAAAUGUUUU	chr1:186282897-186283214(-)$1	317	229	245	19.0000
AGUGUUAAAAUUGCCU	chr6:166737956-166738184(-)$1	228	184	200	20.0000
UGUAAUAAAAUUGUUU	chr12:26571969-26572245(-)$1	276	102	118	26.5000
GGUGUUAAAUUUGUGU	chr2:32530569-32530825(+)$1	256	154	170	17.5000
AGUAUUUUAUUUGUUU	chr4:57897000-57897294(+)$1	294	254	270	21.0000
AAUGAUUAUAUUUUUU	chr5:133292406-133292656(-)$1	250	89	105	17.4999
UAAUAUACCAUUGUUU	chr3:149089373-149089621(-)$1	248	189	205	14.0000
AGUAUUUAAAUUGCUU	chr18:56998159-56998430(-)$1	271	169	185	23.5000

#otherMatches

#Struct PSSM
YYEEEEE?????CCC}	chr6:122779583-122779835(-)$1	252	225	241	18.4999
ffffffooooooffff	chr13:45007957-45008213(-)$1	256	166	182	17.5000
ee4444==========	chr1:186282897-186283214(-)$1	317	229	245	19.0000
hhhhhh####ddddpp	chr6:166737956-166738184(-)$1	228	184	200	20.0000
:::::::::::CCCCC	chr12:26571969-26572245(-)$1	276	102	118	26.5000
cc333ffffff55555	chr2:32530569-32530825(+)$1	256	154	170	17.5000
eeeee22hhhhhhhh:	chr4:57897000-57897294(+)$1	294	254	270	21.0000
::DDDDNNNNNJJJJJ	chr5:133292406-133292656(-)$1	250	89	105	17.4999
mmmmffffff::HHHH	chr3:149089373-149089621(-)$1	248	189	205	14.0000
gmmmmggggggg]eee	chr18:56998159-56998430(-)$1	271	169	185	23.5000

#DB
..))))).....))).	chr6:122779583-122779835(-)$1	1	225	241	18.4999
((((((......))))	chr13:45007957-45008213(-)$1	1	166	182	17.5000
))....))))))))))	chr1:186282897-186283214(-)$1	1	229	245	19.0000
((((((....((((..	chr6:166737956-166738184(-)$1	1	184	200	20.0000
...........(((((	chr12:26571969-26572245(-)$1	1	102	118	26.5000
))...)))))).....	chr2:32530569-32530825(+)$1	1	154	170	17.5000
)))))..)))))))).	chr4:57897000-57897294(+)$1	1	254	270	21.0000
..((((.....(((((	chr5:133292406-133292656(-)$1	1	89	105	17.4999
....))))))..))))	chr3:149089373-149089621(-)$1	1	189	205	14.0000
(....))))))).)))	chr18:56998159-56998430(-)$1	1	169	185	23.5000

#PSSM
A : 0.60	U : 0.30	G : 0.10	
G : 0.60	U : 0.20	A : 0.20	
U : 0.70	A : 0.20	G : 0.10	
A : 0.50	G : 0.30	U : 0.20	
A : 0.60	U : 0.40	
U : 0.99	
A : 0.60	U : 0.40	
A : 0.70	U : 0.20	C : 0.10	
A : 0.79	U : 0.10	C : 0.10	
A : 0.70	U : 0.20	G : 0.10	
U : 0.99	
U : 0.89	G : 0.10	
G : 0.79	U : 0.20	
U : 0.70	C : 0.20	A : 0.10	
U : 0.79	C : 0.10	G : 0.10	
U : 0.99	

#score	195.0
#seq	10
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_transcript_m2_run2.nuc.txt

#NT
GCGGCUGCGGG	chr6:16760606-16760909(-)$1	303	36	47	20.1929
GGGGCUGAGGA	chr17:45773262-45773557(+)$1	295	14	25	16.4210
AGGGCUGCCGG	chr19:56166203-56166480(+)$1	277	116	127	15.8947
ggagguggggg	chr19:35496234-35496490(+)$1	256	42	53	13.8771
GAGGGUGCUGG	chr3:184096986-184097240(+)$1	254	6	17	12.8245
GGGCCUGCGGG	chr21:45739352-45739651(+)$1	299	82	93	18.7017
GCGGCUGCGGG	chr6:16760811-16761043(-)$1	232	170	181	20.1929
GAGGCUGUCGG	chr2:32582836-32583108(+)$1	272	55	66	13.4385
GGGGAAGCGGG	chrX:20284232-20284458(-)$1	226	70	81	16.0701
UGGGCUGGGGG	chr12:132402429-132402780(+)$1	351	332	343	17.1228
GGGGCUGCAGG	chr19:18547588-18547846(-)$1	258	220	231	19.5789
GCGGCGGCGGG	chr5:86563951-86564223(+)$1	272	166	177	17.3859
GGCGCGGCGGG	chr6:42750353-42750664(+)$1	311	176	187	16.7719
GGGGGUGGAGG	chr14:55255837-55256110(+)$1	273	96	107	13.6140
GGGGGUGUGGG	chr13:113762010-113762311(+)$1	301	237	248	17.1228
ggcgcggcggg	chr2:191513658-191513921(+)$1	263	124	135	16.7719
GGAGCUGCGGC	chr13:113764281-113764581(+)$1	300	42	53	16.4210
GUGGCUGGGGG	chr12:69202189-69202438(+)$1	249	186	197	17.2982
CGGGCUGGGGG	chr11:65190324-65190540(+)$1	216	61	72	17.2105
GUGGCUCCGGG	chr19:42758323-42758578(-)$1	255	97	108	15.4561
GGGGGCGCGGG	chr1:29507778-29508093(-)$1	315	77	88	16.7719
GCAGCUGCGGG	chr22:51122429-51122764(+)$1	335	225	236	16.5964
GGGGCCGCUGG	chr12:76478106-76478382(-)$1	276	139	150	16.6842
GGGGUGGCGGG	chr19:54041190-54041448(+)$1	258	183	194	16.5964
AGGGCUCCGGG	chr16:8962507-8962769(-)$1	262	79	90	15.2807
GGUGCUGUGGG	chrM:14284-14499(-)$1	215	130	141	16.5964
GAGGGUGCUGG	chr1:1280120-1280400(-)$1	280	31	42	12.8245
GGAGCCGCGGG	chr7:77166718-77166977(+)$1	259	11	22	16.6842
GGGGCUGGGUG	chr20:25529107-25529433(-)$1	326	100	111	16.4210
GGGGCAGUGGG	chr2:241902195-241902475(-)$1	280	101	112	17.2105
GCGGCUGCGGG	chr3:38496427-38496693(+)$1	266	167	178	20.1929
GCGGCUGCGGG	chr11:63954010-63954257(+)$1	247	44	55	20.1929
UGGGCGGCGGG	chr17:74380113-74380342(+)$1	229	21	32	16.7719
ggggcgggggg	chr1:245026395-245026616(-)$1	221	200	211	18.1754
GGGGCUGGGGC	chr14:32546554-32546818(+)$1	264	199	210	17.5614
ggggccgcggc	chr8:143484098-143484385(-)$1	287	19	30	16.8596
GGGGCGGCGGC	chr17:1302694-1302965(-)$1	271	135	146	17.2105
AGGGCUGCUGG	chr7:157611421-157611690(-)$1	269	112	123	15.9824
GGGGCUGCGGG	chr6:64282765-64283019(+)$1	254	65	76	23.4385
GCGGCUCCGGG	chr20:362245-362497(+)$1	252	223	234	15.8947
GGAGCUGCGGC	chr13:113764171-113764461(+)$1	290	152	163	16.4210
GGGGCCGAGGG	chr3:12329504-12329816(+)$1	312	96	107	17.2105
CGGGCUGCGGC	chr12:30907414-30907701(-)$1	287	24	35	16.2456
GGGGCUUCGGC	chr17:7477029-7477290(+)$1	261	78	89	15.5438
GGGGCUGCGUG	chr19:2271016-2271283(+)$1	267	77	88	18.8771
GGGGGUGUGGG	chr7:2678039-2678301(+)$1	262	129	140	17.1228
GGAGAUGCGGG	chr14:21549699-21549937(+)$1	238	87	98	15.8947
GGGGCUGGUGG	chr20:60624114-60624378(-)$1	264	179	190	17.3859
GGGGCUGUGAG	chr2:242751081-242751320(+)$1	239	198	209	15.9824
GAGGCUGAGGG	chr11:1706451-1706729(-)$1	278	246	257	16.8596
GGGGCGACGGG	chr17:1302902-1303153(-)$1	251	43	54	16.1578
uggucugcggg	chr2:242510749-242511064(+)$1	315	149	160	14.8421
GGCGCUGCCGG	chr16:30538405-30538663(-)$1	258	159	170	15.8947
ggggcuggggG	chr19:879115-879384(-)$1	269	253	264	20.9824
GGGGCUGCCGA	chr7:157689845-157690108(-)$1	263	27	38	15.8070
CGGGCUGCGGC	chr7:44836332-44836636(+)$1	304	177	188	16.2456

#otherMatches

#Struct PSSM
ggnnnnngggg	chr3:41241218-41241450(+)$1	232	25	36	16.8596
[hhhhhhhh[c	chr6:16760606-16760909(-)$1	303	36	47	20.1929
=======####	chr17:45773262-45773557(+)$1	295	14	25	16.4210
ooooeeeee44	chr19:56166203-56166480(+)$1	277	116	127	15.8947
OOOODDDDDDD	chr19:35496234-35496490(+)$1	256	42	53	13.8771
::::::GGGGG	chr3:184096986-184097240(+)$1	254	6	17	12.8245
oooccc]a333	chr21:45739352-45739651(+)$1	299	82	93	18.7017
odddd:DDDD}	chr6:16760811-16761043(-)$1	232	170	181	20.1929
#bb[bb[ccc[	chr2:32582836-32583108(+)$1	272	55	66	13.4385
bb####bbsss	chrX:20284232-20284458(-)$1	226	70	81	16.0701
EEIIIIIIIII	chr12:132402429-132402780(+)$1	351	332	343	17.1228
CChhhhhhhho	chr19:18547588-18547846(-)$1	258	220	231	19.5789
fffff22====	chr5:86563951-86564223(+)$1	272	166	177	17.3859
::fffffflll	chr6:42750353-42750664(+)$1	311	176	187	16.7719
ffff[bb"""a	chr14:55255837-55256110(+)$1	273	96	107	13.6140
[ddddqqqqqq	chr13:113762010-113762311(+)$1	301	237	248	17.1228
!dddd!!ammm	chr2:191513658-191513921(+)$1	263	124	135	16.7719
Fdddd[eeeee	chr13:113764281-113764581(+)$1	300	42	53	16.4210
b]ccc]ggggg	chr12:69202189-69202438(+)$1	249	186	197	17.2982
HHH{DDDD{BB	chr11:65190324-65190540(+)$1	216	61	72	17.2105
FFFF{GGGGGG	chr19:42758323-42758578(-)$1	255	97	108	15.4561
lleeeeeHHHH	chr1:29507778-29508093(-)$1	315	77	88	16.7719
GGGGGGEEEEE	chr22:51122429-51122764(+)$1	335	225	236	16.5964
HHHHHH{BBdd	chr12:76478106-76478382(-)$1	276	139	150	16.6842
22ccc]dddd:	chr19:54041190-54041448(+)$1	258	183	194	16.5964
i==========	chr16:8962507-8962769(-)$1	262	79	90	15.2807
[eeeee[appp	chrM:14284-14499(-)$1	215	130	141	16.5964
eeeeedddd[b	chr1:1280120-1280400(-)$1	280	31	42	12.8245
GGGDDDD{DDD	chr7:77166718-77166977(+)$1	259	11	22	16.6842
hhhhhhhh]a]	chr20:25529107-25529433(-)$1	326	100	111	16.4210
ii88888888=	chr2:241902195-241902475(-)$1	280	101	112	17.2105
ffmmmmfffff	chr3:38496427-38496693(+)$1	266	167	178	20.1929
ffffff[bb[c	chr11:63954010-63954257(+)$1	247	44	55	20.1929
c[bb[ddddpp	chr17:74380113-74380342(+)$1	229	21	32	16.7719
g]a]a:A}DDD	chr1:245026395-245026616(-)$1	221	200	211	18.1754
eeeeemmmmee	chr14:32546554-32546818(+)$1	264	199	210	17.5614
DDDDA{EEEEE	chr8:143484098-143484385(-)$1	287	19	30	16.8596
eeeeeDDDD}E	chr17:1302694-1302965(-)$1	271	135	146	17.2105
!bb[eeeeepp	chr7:157611421-157611690(-)$1	269	112	123	15.9824
EKKCCC{DDDD	chr6:64282765-64283019(+)$1	254	65	76	23.4385
dd[a[ddddss	chr20:362245-362497(+)$1	252	223	234	15.8947
eeeee[eeeee	chr13:113764171-113764461(+)$1	290	152	163	16.4210
eeedddd]bbh	chr3:12329504-12329816(+)$1	312	96	107	17.2105
========!!a	chr12:30907414-30907701(-)$1	287	24	35	16.2456
ooooeeeeea]	chr17:7477029-7477290(+)$1	261	78	89	15.5438
{DDDDUUUUUU	chr19:2271016-2271283(+)$1	267	77	88	18.8771
dddccc[eeee	chr7:2678039-2678301(+)$1	262	129	140	17.1228
mccc]ccc]cc	chr14:21549699-21549937(+)$1	238	87	98	15.8947
ppeeeee]ccc	chr20:60624114-60624378(-)$1	264	179	190	17.3859
IIIIIII}DDD	chr2:242751081-242751320(+)$1	239	198	209	15.9824
HHHHYYHHHHH	chr11:1706451-1706729(-)$1	278	246	257	16.8596
d!!eeeee[bb	chr17:1302902-1303153(-)$1	251	43	54	16.1578
}FFFFFFYYBB	chr2:242510749-242511064(+)$1	315	149	160	14.8421
##a[bb[dddd	chr16:30538405-30538663(-)$1	258	159	170	15.8947
}BB}BB}A}A}	chr19:879115-879384(-)$1	269	253	264	20.9824
fooooooffff	chr7:157689845-157690108(-)$1	263	27	38	15.8070
AKKCCC{BB{A	chr7:44836332-44836636(+)$1	304	177	188	16.2456

#DB
((.....))))	chr3:41241218-41241450(+)$1	1	25	36	16.8596
.((((((((.(	chr6:16760606-16760909(-)$1	1	36	47	20.1929
(((((((....	chr17:45773262-45773557(+)$1	1	14	25	16.4210
....)))))..	chr19:56166203-56166480(+)$1	1	116	127	15.8947
....(((((((	chr19:35496234-35496490(+)$1	1	42	53	13.8771
......(((((	chr3:184096986-184097240(+)$1	1	6	17	12.8245
...))).)...	chr21:45739352-45739651(+)$1	1	82	93	18.7017
.)))).)))).	chr6:16760811-16761043(-)$1	1	170	181	20.1929
.((.((.(((.	chr2:32582836-32583108(+)$1	1	55	66	13.4385
((....((...	chrX:20284232-20284458(-)$1	1	70	81	16.0701
)))))))))))	chr12:132402429-132402780(+)$1	1	332	343	17.1228
))((((((((.	chr19:18547588-18547846(-)$1	1	220	231	19.5789
)))))..))))	chr5:86563951-86564223(+)$1	1	166	177	17.3859
..((((((...	chr6:42750353-42750664(+)$1	1	176	187	16.7719
((((.((...(	chr14:55255837-55256110(+)$1	1	96	107	13.6140
.((((......	chr13:113762010-113762311(+)$1	1	237	248	17.1228
.((((..(...	chr2:191513658-191513921(+)$1	1	124	135	16.7719
(((((.(((((	chr13:113764281-113764581(+)$1	1	42	53	16.4210
).))).)))))	chr12:69202189-69202438(+)$1	1	186	197	17.2982
(((.((((.((	chr11:65190324-65190540(+)$1	1	61	72	17.2105
((((.((((((	chr19:42758323-42758578(-)$1	1	97	108	15.4561
..)))))((((	chr1:29507778-29508093(-)$1	1	77	88	16.7719
)))))))))))	chr22:51122429-51122764(+)$1	1	225	236	16.5964
((((((.((((	chr12:76478106-76478382(-)$1	1	139	150	16.6842
..))).)))).	chr19:54041190-54041448(+)$1	1	183	194	16.5964
)((((((((((	chr16:8962507-8962769(-)$1	1	79	90	15.2807
.(((((.(...	chrM:14284-14499(-)$1	1	130	141	16.5964
(((((((((.(	chr1:1280120-1280400(-)$1	1	31	42	12.8245
(((((((.(((	chr7:77166718-77166977(+)$1	1	11	22	16.6842
)))))))).).	chr20:25529107-25529433(-)$1	1	100	111	16.4210
))........)	chr2:241902195-241902475(-)$1	1	101	112	17.2105
((....)))))	chr3:38496427-38496693(+)$1	1	167	178	20.1929
((((((.((.(	chr11:63954010-63954257(+)$1	1	44	55	20.1929
(.((.((((..	chr17:74380113-74380342(+)$1	1	21	32	16.7719
).).).).)))	chr1:245026395-245026616(-)$1	1	200	211	18.1754
(((((....))	chr14:32546554-32546818(+)$1	1	199	210	17.5614
(((((.(((((	chr8:143484098-143484385(-)$1	1	19	30	16.8596
))))))))).)	chr17:1302694-1302965(-)$1	1	135	146	17.2105
.((.(((((..	chr7:157611421-157611690(-)$1	1	112	123	15.9824
(..(((.((((	chr6:64282765-64283019(+)$1	1	65	76	23.4385
((.(.((((..	chr20:362245-362497(+)$1	1	223	234	15.8947
(((((.(((((	chr13:113764171-113764461(+)$1	1	152	163	16.4210
))))))).))(	chr3:12329504-12329816(+)$1	1	96	107	17.2105
((((((((..(	chr12:30907414-30907701(-)$1	1	24	35	16.2456
....)))))).	chr17:7477029-7477290(+)$1	1	78	89	15.5438
.((((......	chr19:2271016-2271283(+)$1	1	77	88	18.8771
)))(((.((((	chr7:2678039-2678301(+)$1	1	129	140	17.1228
.))).))).))	chr14:21549699-21549937(+)$1	1	87	98	15.8947
..))))).)))	chr20:60624114-60624378(-)$1	1	179	190	17.3859
))))))).)))	chr2:242751081-242751320(+)$1	1	198	209	15.9824
))))..)))))	chr11:1706451-1706729(-)$1	1	246	257	16.8596
(..(((((.((	chr17:1302902-1303153(-)$1	1	43	54	16.1578
.))))))..))	chr2:242510749-242511064(+)$1	1	149	160	14.8421
..(.((.((((	chr16:30538405-30538663(-)$1	1	159	170	15.8947
.)).)).).).	chr19:879115-879384(-)$1	1	253	264	20.9824
(......))))	chr7:157689845-157690108(-)$1	1	27	38	15.8070
(..(((.((.(	chr7:44836332-44836636(+)$1	1	177	188	16.2456

#PSSM
G : 0.73	g : 0.08	C : 0.07	A : 0.05	U : 0.03	u : 0.01	
G : 0.66	C : 0.12	g : 0.10	A : 0.07	U : 0.03	
G : 0.75	A : 0.08	g : 0.07	C : 0.03	a : 0.01	c : 0.01	U : 0.01	
G : 0.87	g : 0.08	C : 0.01	u : 0.01	
C : 0.73	G : 0.10	c : 0.08	A : 0.03	g : 0.01	U : 0.01	
U : 0.66	G : 0.12	C : 0.07	u : 0.05	A : 0.03	g : 0.03	c : 0.01	
G : 0.80	g : 0.10	C : 0.05	U : 0.01	A : 0.01	
C : 0.61	G : 0.12	U : 0.10	A : 0.05	g : 0.05	c : 0.05	
G : 0.70	g : 0.10	U : 0.08	C : 0.07	A : 0.03	
G : 0.84	g : 0.10	U : 0.03	A : 0.01	
G : 0.75	C : 0.12	g : 0.07	A : 0.03	c : 0.01	

#score	960.649122807019
#seq	57
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_transcript_m1_run2.nuc.txt

#NT
cacacacacacacacacacacacacacacacacacacac	chr14:55068897-55069131(+)$1	234	145	184	104.5510
Uacacacacacacacacacacacacacacacggacacau	chr9:96865263-96865536(+)$1	273	9	48	87.9183
CAUGAacacacacacacacacacacacacacacacacac	chr22:42965750-42966019(-)$1	269	134	173	92.5102
cacacacacacacacacacacacacacacacacaaacac	chr12:111902101-111902349(-)$1	248	176	215	100.1632
cacacacacacacacacacacacacacacauacacacac	chr9:129807884-129808150(+)$1	266	126	165	100.0612
CCCCCACCCCcacacacacacacacacacacaugcacac	chr5:115781772-115782028(-)$1	256	36	75	78.2244
cacacacacacacacacacacacacacacacacacacac	chr7:100075808-100076067(-)$1	259	43	82	104.5510
cacacacacacacauauauauauacacauacauacacac	chr13:113507508-113507728(+)$1	220	88	127	77.3061
cacacacacacacacauacacacacauauacauagacac	chrX:65817307-65817550(-)$1	243	41	80	85.1632
cauacacacagacaccaagacacacacagacacccacac	chr13:50851208-50851427(+)$1	219	142	181	75.1632
cacacacacacacacacacacacacacacacacacacac	chr13:98929203-98929505(+)$1	302	161	200	104.5510
cauacacacgcgcacacauacacgcacacacacauccac	chr21:46915587-46915800(+)$1	213	23	62	73.8367
cacacacacacacacacacauacacacacacacgcacac	chr11:78081591-78081843(-)$1	252	52	91	96.5918
UacacacacacacacacacacacacacacacaGCAGGAC	chr2:236445038-236445259(+)$1	221	11	50	78.9387
cacacacacacacacacacacacacacacacauacauac	chr6:4929663-4929929(+)$1	266	65	104	96.6938
cacacacacacacacagagauacacacagagacacacac	chr18:11996756-11997119(+)$1	363	243	282	83.8367
cacacacacacacacacacacacacacacacacacacac	chr15:25295810-25296021(+)$1	211	73	112	104.5510
cacacacacacacacacacacacacacacacacacacac	chr20:33674137-33674412(-)$1	275	34	73	104.5510
UAUAUAUauacacacacacacacacacacacauacacac	chr7:158292400-158292638(-)$1	238	129	168	81.8979
AAUUcacacacacacacacacacacacacacacacacaG	chr4:128630730-128631061(+)$1	331	132	171	88.2244
CUCUUacacauacacacacacacacauacacacacacac	chr22:28611486-28611782(-)$1	296	146	185	83.2244
cacacacacacacacacacacacacacacacacacacac	chr2:32976187-32976460(+)$1	273	138	177	104.5510
cacauacacacacacacacacacacacacacacacacac	chr14:90022117-90022331(-)$1	214	106	145	100.5714
cacacacacacacacacacacacacacacacacacacac	chr6:2258265-2258562(+)$1	297	39	78	104.5510
cacacacacacacacacacacacacgcacacacacacac	chr7:40605519-40605777(+)$1	258	47	86	99.7551
cacacacacacacacacacacacacacacacacacacac	chr17:38296570-38296827(+)$1	257	57	96	104.5510
cacacacacacacacacacacacacacacacacacacac	chr6:42627153-42627475(+)$1	322	106	145	104.5510
cacacacacacacacacacacacacacacacacacacac	chr6:132783610-132783903(-)$1	293	143	182	104.5510
cacacacacacacacacacauauacaugcacauacauac	chr8:17060137-17060413(+)$1	276	107	146	80.1632
cacacacacacacacacacacacacacacacacacacac	chrX:151140209-151140449(-)$1	240	64	103	104.5510
cacacacacacacacacacacacacacacacacacacac	chr11:35813564-35813825(+)$1	261	59	98	104.5510
cacacacacacacacacacacacacacacacacacacac	chr2:43013082-43013345(-)$1	263	136	175	104.5510
cacacacacacacacacacacacacacacacacacacac	chr20:36136099-36136364(-)$1	265	60	99	104.5510
cacacauacacacacacacacacacacacacacacacac	chr11:72670786-72671091(-)$1	305	154	193	100.3673
cacacacacacacacacacacacacacacacacacacac	chr18:9196048-9196267(+)$1	219	59	98	104.5510
uauacacauacauacauacacacacacacauacacacac	chr16:11795713-11795977(-)$1	264	25	64	80.5714
CAGacacacacacacacacacacacacacacacacacac	chr5:102300826-102301125(+)$1	299	37	76	100.5714
cacacacacacacacacacacacacacacacacacacac	chr1:93972583-93972847(+)$1	264	31	70	104.5510
uauacauauacacacacacauauacauacacacacacaU	chr2:63110057-63110277(+)$1	220	82	121	73.2244
cacacacacacacacacacacacacacacacacacacac	chr2:203630657-203630926(+)$1	269	128	167	104.5510
cacacgcacacacauguacauacgcacacacacacacac	chr20:36001551-36001787(+)$1	236	96	135	78.9387
cacacacacacacacacacacacacacacacacacacac	chr8:76212092-76212357(-)$1	265	127	166	104.5510
cacacacacacacacacacacacacacacacacacacac	chr14:31603678-31603909(-)$1	231	135	174	104.5510
cacacacacacacacacacacacacacacacacacacau	chr17:59987009-59987261(-)$1	252	39	78	100.2653
uauauauguauacacacacacacacacacacacacacac	chr22:47337072-47337307(+)$1	235	21	60	76.2857
cacacacacacacacacacacacacacacacacacacac	chr12:1910926-1911276(-)$1	350	51	90	104.5510
cacagacacauacacaugcacacacauauacacacacac	chr7:55270856-55271121(+)$1	265	11	50	79.6530
cacacacacacacacacacacacacacacacacacacac	chr19:18572963-18573265(-)$1	302	235	274	104.5510

#otherMatches

#Struct PSSM
cc0000000000============:::::::::::::::	chr13:113507528-113507796(+)$1	268	68	107	77.3061
:::::::::::::::::::::::::::::::::::::::	chr14:55068897-55069131(+)$1	234	145	184	104.5510
::::::::::::::::::::::::::::::DDDD{CCC{	chr9:96865263-96865536(+)$1	273	9	48	87.9183
:::::::::::::::::::::::::::::::::::::::	chr22:42965750-42966019(-)$1	269	134	173	92.5102
:::::::::::::::::::::::::::::::::::::::	chr12:111902101-111902349(-)$1	248	176	215	100.1632
d::::::::::::::::::::::::::::::::::::::	chr9:129807884-129808150(+)$1	266	126	165	100.0612
BKKDDDD{CCC:::::::::::::::::::::ccc^^^^	chr5:115781772-115782028(-)$1	256	36	75	78.2244
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:100075808-100076067(-)$1	259	43	82	104.5510
cc0000000000============:::::::::::::::	chr13:113507508-113507728(+)$1	220	88	127	77.3061
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:65817307-65817550(-)$1	243	41	80	85.1632
eee::::::::::::::::::::::::::::::::::::	chr13:50851208-50851427(+)$1	219	142	181	75.1632
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:98929203-98929505(+)$1	302	161	200	104.5510
sssssssssbbccc####hhhhhhhh####cccqqqqqq	chr21:46915587-46915800(+)$1	213	23	62	73.8367
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]ccc]dd	chr11:78081591-78081843(-)$1	252	52	91	96.5918
qqeeeee:::::::::::::::::::::DDDDMMMMEEE	chr2:236445038-236445259(+)$1	221	11	50	78.9387
cc:::::::::::::::::::::::::::::::::::::	chr6:4929663-4929929(+)$1	266	65	104	96.6938
^^^^^^^^^^^^^^^^dddd:::::::::::::::::::	chr18:11996756-11997119(+)$1	363	243	282	83.8367
ccc::::::::::::::::::::::::::::::::::::	chr15:25295810-25296021(+)$1	211	73	112	104.5510
:::::::::::::::::::::::::::::::::::::::	chr20:33674137-33674412(-)$1	275	34	73	104.5510
=mmmm============::::::::::::::::::::::	chr7:158292400-158292638(-)$1	238	129	168	81.8979
::::::::::::::::::::::::::::::::::::ddd	chr4:128630730-128631061(+)$1	331	132	171	88.2244
::::::::::::::::::::::::ccc[ffffffppppp	chr22:28611486-28611782(-)$1	296	146	185	83.2244
:::::::::::::::::::::::::::::::::::::::	chr2:32976187-32976460(+)$1	273	138	177	104.5510
:::::::::::::::::::::::::::::::::::::::	chr14:90022117-90022331(-)$1	214	106	145	100.5714
:::::::::::::::::::::::::::::::::::::::	chr6:2258265-2258562(+)$1	297	39	78	104.5510
eeebb::::::::::::::::::::::::::::::::::	chr7:40605519-40605777(+)$1	258	47	86	99.7551
:::::::::::::::::::::::::::::::::::::::	chr17:38296570-38296827(+)$1	257	57	96	104.5510
::::::::::::::::::::::::::dddd%%%%%%bb[	chr6:42627153-42627475(+)$1	322	106	145	104.5510
:::::::::::::::::::::::::::::::::::::::	chr6:132783610-132783903(-)$1	293	143	182	104.5510
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr8:17060137-17060413(+)$1	276	107	146	80.1632
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:151140209-151140449(-)$1	240	64	103	104.5510
CC{CCC{DDDD::::::::::::::::::::::::::::	chr11:35813564-35813825(+)$1	261	59	98	104.5510
c333ccc::::::::::::::::::::::::::::::::	chr2:43013082-43013345(-)$1	263	136	175	104.5510
ee::::::::::::::::::EEEEELLLCCC{CCC{BB{	chr20:36136099-36136364(-)$1	265	60	99	104.5510
DD{DDDD:::::::::::::::::::::::::::::::d	chr11:72670786-72671091(-)$1	305	154	193	100.3673
:::::::::::::::::::::::::::::::::::::::	chr18:9196048-9196267(+)$1	219	59	98	104.5510
hhhEEEEE:::::BBFFFFFF{DDDD{CCC::eeeee!!	chr16:11795713-11795977(-)$1	264	25	64	80.5714
qeeeee::::::::::::::::::::::::::::::::E	chr5:102300826-102301125(+)$1	299	37	76	100.5714
IIIIRRRRRRRRRGGGGGGG:::::::::::::::::::	chr1:93972583-93972847(+)$1	264	31	70	104.5510
!!hhhhhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:63110057-63110277(+)$1	220	82	121	73.2244
DDDD:::::::::::::::::::::::::::::::::::	chr2:203630657-203630926(+)$1	269	128	167	104.5510
hhuuuuuuuuuuuuhhhhhhhh]ccc:::::::::::::	chr20:36001551-36001787(+)$1	236	96	135	78.9387
:::::::::::::::::::::::::::::::::::::::	chr8:76212092-76212357(-)$1	265	127	166	104.5510
B::::::::::::::::::::::::::::::::::::::	chr14:31603678-31603909(-)$1	231	135	174	104.5510
{BB::::::::::::::::::::::::::::::::::ee	chr17:59987009-59987261(-)$1	252	39	78	100.2653
JJJJJJJJJ::::::::::::::::::::::::::::::	chr22:47337072-47337307(+)$1	235	21	60	76.2857
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:1910926-1911276(-)$1	350	51	90	104.5510
:::::::::::::::EEEEE:::::::::::::::::::	chr7:55270856-55271121(+)$1	265	11	50	79.6530
ccc::::::::::::::::::::::::::::::::::::	chr19:18572963-18573265(-)$1	302	235	274	104.5510

#DB
))..........))))))))))))...............	chr13:113507528-113507796(+)$1	1	68	107	77.3061
.......................................	chr14:55068897-55069131(+)$1	1	145	184	104.5510
..............................((((.(((.	chr9:96865263-96865536(+)$1	1	9	48	87.9183
.......................................	chr22:42965750-42966019(-)$1	1	134	173	92.5102
.......................................	chr12:111902101-111902349(-)$1	1	176	215	100.1632
)......................................	chr9:129807884-129808150(+)$1	1	126	165	100.0612
(..((((.(((.....................(((....	chr5:115781772-115782028(-)$1	1	36	75	78.2244
.......................................	chr7:100075808-100076067(-)$1	1	43	82	104.5510
))..........))))))))))))...............	chr13:113507508-113507728(+)$1	1	88	127	77.3061
.......................................	chrX:65817307-65817550(-)$1	1	41	80	85.1632
)))....................................	chr13:50851208-50851427(+)$1	1	142	181	75.1632
((.....................................	chr13:98929203-98929505(+)$1	1	161	200	104.5510
.........))(((....((((((((....(((......	chr21:46915587-46915800(+)$1	1	23	62	73.8367
..............................)).))).))	chr11:78081591-78081843(-)$1	1	52	91	96.5918
..))))).....................((((....(((	chr2:236445038-236445259(+)$1	1	11	50	78.9387
)).....................................	chr6:4929663-4929929(+)$1	1	65	104	96.6938
................))))...................	chr18:11996756-11997119(+)$1	1	243	282	83.8367
)))....................................	chr15:25295810-25296021(+)$1	1	73	112	104.5510
.......................................	chr20:33674137-33674412(-)$1	1	34	73	104.5510
(....))))))))))))......................	chr7:158292400-158292638(-)$1	1	129	168	81.8979
....................................(((	chr4:128630730-128631061(+)$1	1	132	171	88.2244
........................(((.((((((.....	chr22:28611486-28611782(-)$1	1	146	185	83.2244
.......................................	chr2:32976187-32976460(+)$1	1	138	177	104.5510
.......................................	chr14:90022117-90022331(-)$1	1	106	145	100.5714
.......................................	chr6:2258265-2258562(+)$1	1	39	78	104.5510
)))))..................................	chr7:40605519-40605777(+)$1	1	47	86	99.7551
.......................................	chr17:38296570-38296827(+)$1	1	57	96	104.5510
..........................((((......((.	chr6:42627153-42627475(+)$1	1	106	145	104.5510
.......................................	chr6:132783610-132783903(-)$1	1	143	182	104.5510
((.....................................	chr8:17060137-17060413(+)$1	1	107	146	80.1632
.......................................	chrX:151140209-151140449(-)$1	1	64	103	104.5510
((.(((.((((............................	chr11:35813564-35813825(+)$1	1	59	98	104.5510
)...)))................................	chr2:43013082-43013345(-)$1	1	136	175	104.5510
))..................(((((...(((.(((.((.	chr20:36136099-36136364(-)$1	1	60	99	104.5510
((.((((...............................(	chr11:72670786-72671091(-)$1	1	154	193	100.3673
.......................................	chr18:9196048-9196267(+)$1	1	59	98	104.5510
)))(((((.....((((((((.((((.(((..(((((..	chr16:11795713-11795977(-)$1	1	25	64	80.5714
.)))))................................)	chr5:102300826-102301125(+)$1	1	37	76	100.5714
((((.........(((((((...................	chr1:93972583-93972847(+)$1	1	31	70	104.5510
..((((((((.............................	chr2:63110057-63110277(+)$1	1	82	121	73.2244
))))...................................	chr2:203630657-203630926(+)$1	1	128	167	104.5510
((............)))))))).))).............	chr20:36001551-36001787(+)$1	1	96	135	78.9387
.......................................	chr8:76212092-76212357(-)$1	1	127	166	104.5510
)......................................	chr14:31603678-31603909(-)$1	1	135	174	104.5510
.((..................................((	chr17:59987009-59987261(-)$1	1	39	78	100.2653
(((((((((..............................	chr22:47337072-47337307(+)$1	1	21	60	76.2857
.......................................	chr12:1910926-1911276(-)$1	1	51	90	104.5510
...............(((((...................	chr7:55270856-55271121(+)$1	1	11	50	79.6530
)))....................................	chr19:18572963-18573265(-)$1	1	235	274	104.5510

#PSSM
c : 0.77	C : 0.08	U : 0.06	u : 0.06	A : 0.02	
a : 0.87	A : 0.08	C : 0.02	U : 0.02	
c : 0.77	u : 0.10	U : 0.06	C : 0.04	G : 0.02	
a : 0.89	U : 0.04	G : 0.02	C : 0.02	A : 0.02	
c : 0.85	U : 0.04	u : 0.04	A : 0.02	C : 0.02	g : 0.02	
a : 0.93	A : 0.04	g : 0.02	
c : 0.89	u : 0.06	C : 0.02	U : 0.02	
a : 0.95	C : 0.02	g : 0.02	
c : 0.89	u : 0.08	C : 0.02	
a : 0.95	C : 0.02	g : 0.02	
c : 0.91	u : 0.06	g : 0.02	
a : 0.97	g : 0.02	
c : 0.97	u : 0.02	
a : 1.00	
c : 0.93	u : 0.06	
a : 0.95	c : 0.02	g : 0.02	
c : 0.83	u : 0.12	a : 0.02	g : 0.02	
a : 0.97	g : 0.02	
c : 0.89	u : 0.06	g : 0.04	
a : 1.00	
c : 0.85	u : 0.14	
a : 1.00	
c : 0.91	u : 0.08	
a : 0.95	g : 0.04	
c : 1.00	
a : 0.97	g : 0.02	
c : 0.89	u : 0.10	
a : 0.97	g : 0.02	
c : 0.87	u : 0.08	g : 0.04	
a : 1.00	
c : 0.93	u : 0.04	g : 0.02	
a : 0.97	g : 0.02	
c : 0.81	u : 0.14	g : 0.02	G : 0.02	
a : 0.91	g : 0.04	c : 0.02	C : 0.02	
c : 0.91	a : 0.02	g : 0.02	u : 0.02	A : 0.02	
a : 0.95	c : 0.02	G : 0.02	
c : 0.93	u : 0.04	G : 0.02	
a : 0.97	A : 0.02	
c : 0.89	u : 0.04	C : 0.02	G : 0.02	U : 0.02	

#score	4623.0
#seq	49
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_transcript_m2_run2.nuc.txt

#NT
aagaauau	chr8:9629517-9629782(+)$1	265	205	213	14.6944
AAGAGUAU	chrM:14210-14418(-)$1	208	63	71	17.6111
AAGAGUUA	chrM:4190-4428(+)$1	238	90	98	12.3333
aagaauau	chr8:9629592-9629846(+)$1	254	130	138	14.6944
AAUAGUAA	chr11:65192503-65192753(+)$1	250	76	84	12.8888
AGGAGUAU	chrM:14383-14600(-)$1	217	152	160	13.3055
AAGAGUAU	chrM:14226-14447(-)$1	221	92	100	17.6111
AAGAAUAG	chr11:65195580-65195813(+)$1	233	130	138	13.3055
AGGAGUAU	chrM:14366-14583(-)$1	217	135	143	13.3055
AAGAGUAU	chrM:14247-14494(-)$1	247	139	147	17.6111
UAGAGUAA	chr3:160232594-160232826(-)$1	232	169	177	12.3333
AAGAGUAU	chrM:14160-14376(-)$1	216	21	29	17.6111
aagaggau	chr4:174253048-174253320(-)$1	272	67	75	13.4444
AAAAGUAA	chrM:12138-12347(+)$1	209	192	200	12.7500
GAGAGUAG	chrM:1425-1636(+)$1	211	14	22	11.9166
GAGAGUAG	chrM:1436-1665(+)$1	229	3	11	11.9166
AAGAGGAA	chr11:62620296-62620592(-)$1	296	172	180	12.6111
AAUAGUAU	chr5:134260996-134261230(+)$1	234	134	142	13.7222
AAGAGUAU	chrM:14176-14401(-)$1	225	46	54	17.6111
AAGAGAAA	chr11:65266497-65266721(+)$1	224	206	214	12.6111
AAUAGUAA	chr11:65192423-65192674(+)$1	251	156	164	12.8888
AAGAGAAA	chr8:9628378-9628663(+)$1	285	245	253	12.6111
AAGAGUAU	chrM:14218-14424(-)$1	206	69	77	17.6111
AUGAGUAU	chr19:34882786-34883090(+)$1	304	73	81	13.1666
aaguguag	chr11:62609005-62609323(-)$1	318	70	78	11.6388
AAGAAUAC	chr11:65267511-65267735(+)$1	224	72	80	12.4722
aagauuag	chr19:893460-893688(+)$1	228	69	77	12.4722
AAGAGUAU	chrM:14201-14410(-)$1	209	55	63	17.6111
aaggguaa	chr3:197901245-197901508(+)$1	263	5	13	12.1944
AAGAGUAU	chr5:134262613-134262877(+)$1	264	245	253	17.6111
AAAAGUAA	chrM:12117-12338(+)$1	221	213	221	12.7500
aagaauau	chr8:9629646-9629944(+)$1	298	76	84	14.6944
AAGAAUAG	chr11:65195640-65195898(+)$1	258	70	78	13.3055
AAGAGUUG	chr11:65270409-65270677(+)$1	268	200	208	11.7777
AAGAAUAA	chr5:134259766-134260010(+)$1	244	39	47	13.8611

#otherMatches

#Struct PSSM
:::a[fff	chr5:134260120-134260395(+)$1	275	11	19	17.6111
@@@@@@@E	chr8:9629517-9629782(+)$1	265	205	213	14.6944
oooooccc	chrM:14210-14418(-)$1	208	63	71	17.6111
::::::ff	chrM:4190-4428(+)$1	238	90	98	12.3333
(((eeeee	chr8:9629592-9629846(+)$1	254	130	138	14.6944
iiinnnnn	chr11:65192503-65192753(+)$1	250	76	84	12.8888
bb22ffff	chrM:14383-14600(-)$1	217	152	160	13.3055
oooooccc	chrM:14226-14447(-)$1	221	92	100	17.6111
hhhh]ddd	chr11:65195580-65195813(+)$1	233	130	138	13.3055
b$$$$$ee	chrM:14366-14583(-)$1	217	135	143	13.3055
oooooccc	chrM:14247-14494(-)$1	247	139	147	17.6111
f]bb::::	chr3:160232594-160232826(-)$1	232	169	177	12.3333
pa]eeeee	chrM:14160-14376(-)$1	216	21	29	17.6111
:hhhhhhh	chr4:174253048-174253320(-)$1	272	67	75	13.4444
::::::::	chrM:12138-12347(+)$1	209	192	200	12.7500
c:DDDD{A	chrM:1425-1636(+)$1	211	14	22	11.9166
::::BB{D	chrM:1436-1665(+)$1	229	3	11	11.9166
]dddd22d	chr11:62620296-62620592(-)$1	296	172	180	12.6111
:::::ddd	chr5:134260996-134261230(+)$1	234	134	142	13.7222
pa]eeeee	chrM:14176-14401(-)$1	225	46	54	17.6111
fffbb:::	chr11:65266497-65266721(+)$1	224	206	214	12.6111
qqqqqqqq	chr11:65192423-65192674(+)$1	251	156	164	12.8888
::::::::	chr8:9628378-9628663(+)$1	285	245	253	12.6111
oooooccc	chrM:14218-14424(-)$1	206	69	77	17.6111
=======[	chr19:34882786-34883090(+)$1	304	73	81	13.1666
:A{IIIII	chr11:62609005-62609323(-)$1	318	70	78	11.6388
wwwwwwww	chr11:65267511-65267735(+)$1	224	72	80	12.4722
cc$$$$$b	chr19:893460-893688(+)$1	228	69	77	12.4722
oooooccc	chrM:14201-14410(-)$1	209	55	63	17.6111
::::::::	chr3:197901245-197901508(+)$1	263	5	13	12.1944
rrrrrrrr	chr5:134262613-134262877(+)$1	264	245	253	17.6111
::::::::	chrM:12117-12338(+)$1	221	213	221	12.7500
gggg[ccc	chr8:9629646-9629944(+)$1	298	76	84	14.6944
hhhh]ddd	chr11:65195640-65195898(+)$1	258	70	78	13.3055
fffff]ee	chr11:65270409-65270677(+)$1	268	200	208	11.7777
:::::ggg	chr5:134259766-134260010(+)$1	244	39	47	13.8611

#DB
...(.(((	chr5:134260120-134260395(+)$1	1	11	19	17.6111
.......)	chr8:9629517-9629782(+)$1	1	205	213	14.6944
.....)))	chrM:14210-14418(-)$1	1	63	71	17.6111
......((	chrM:4190-4428(+)$1	1	90	98	12.3333
...(((((	chr8:9629592-9629846(+)$1	1	130	138	14.6944
(((.....	chr11:65192503-65192753(+)$1	1	76	84	12.8888
))..))))	chrM:14383-14600(-)$1	1	152	160	13.3055
.....)))	chrM:14226-14447(-)$1	1	92	100	17.6111
)))).)))	chr11:65195580-65195813(+)$1	1	130	138	13.3055
(.....((	chrM:14366-14583(-)$1	1	135	143	13.3055
.....)))	chrM:14247-14494(-)$1	1	139	147	17.6111
).))....	chr3:160232594-160232826(-)$1	1	169	177	12.3333
.).)))))	chrM:14160-14376(-)$1	1	21	29	17.6111
.(((((((	chr4:174253048-174253320(-)$1	1	67	75	13.4444
........	chrM:12138-12347(+)$1	1	192	200	12.7500
).((((.(	chrM:1425-1636(+)$1	1	14	22	11.9166
....((.(	chrM:1436-1665(+)$1	1	3	11	11.9166
.))))..)	chr11:62620296-62620592(-)$1	1	172	180	12.6111
.....(((	chr5:134260996-134261230(+)$1	1	134	142	13.7222
.).)))))	chrM:14176-14401(-)$1	1	46	54	17.6111
)))))...	chr11:65266497-65266721(+)$1	1	206	214	12.6111
........	chr11:65192423-65192674(+)$1	1	156	164	12.8888
........	chr8:9628378-9628663(+)$1	1	245	253	12.6111
.....)))	chrM:14218-14424(-)$1	1	69	77	17.6111
(((((((.	chr19:34882786-34883090(+)$1	1	73	81	13.1666
.(.(((((	chr11:62609005-62609323(-)$1	1	70	78	11.6388
........	chr11:65267511-65267735(+)$1	1	72	80	12.4722
((.....(	chr19:893460-893688(+)$1	1	69	77	12.4722
.....)))	chrM:14201-14410(-)$1	1	55	63	17.6111
........	chr3:197901245-197901508(+)$1	1	5	13	12.1944
........	chr5:134262613-134262877(+)$1	1	245	253	17.6111
........	chrM:12117-12338(+)$1	1	213	221	12.7500
((((.(((	chr8:9629646-9629944(+)$1	1	76	84	14.6944
)))).)))	chr11:65195640-65195898(+)$1	1	70	78	13.3055
))))).))	chr11:65270409-65270677(+)$1	1	200	208	11.7777
.....(((	chr5:134259766-134260010(+)$1	1	39	47	13.8611

#PSSM
A : 0.72	a : 0.19	G : 0.05	U : 0.02	
A : 0.72	a : 0.19	G : 0.05	U : 0.02	
G : 0.66	g : 0.19	U : 0.08	A : 0.05	
A : 0.80	a : 0.13	u : 0.02	g : 0.02	
G : 0.69	A : 0.11	a : 0.08	g : 0.08	u : 0.02	
U : 0.72	u : 0.16	A : 0.05	g : 0.02	G : 0.02	
A : 0.75	a : 0.19	U : 0.05	
U : 0.36	A : 0.27	G : 0.13	u : 0.11	g : 0.05	C : 0.02	a : 0.02	

#score	508.1666666666669
#seq	36
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_transcript_m1_run1.nuc.txt

#NT
acaucugucaccccauugaucgccaggguugauucagcugaucuggcuggcuaggcagguguccccuuccucccucaccacuccaugugcaucccucccaaagcugcacgcucugu	chr9:77414748-77414952(+)$1	204	86	202	297.0322
acaucugucaccccauugaucgccaggguugauuuggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgcucggu	chr14:90178775-90179003(+)$1	228	103	219	311.7096
acaccugucaucccauugaucgccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccuuccucacugcuucaugugcgucccucccgaagcugcagcucaguc	chr8:144624203-144624473(+)$1	270	100	216	266.3870
acaucugucaccccauugauugccaggguugguucggcugaucuggcuggcuaggcggguguccccuuccucccucacugcuccaugugcgucccuccugaagcugugugcucggu	chr5:6848433-6848662(-)$1	229	111	227	299.4516
acaucugucaccccauugaucgccaggguugauccggcugaucugguuggcuagguggguguccccuuccucccucaccucuccaagugugucccucuugaagcugcaugcucagu	chr18:1323910-1324170(-)$1	260	108	224	279.2903
acaucugucaccccauugaucgccaggguugauucagcugaucuggcuggcuaggcagguguccccuuccucccucaccacuccaugugcaucccucccaaagcugcacgcucugu	chr9:77414752-77414956(+)$1	204	82	198	297.0322
acaucugucaucccauugaucuccaggguugauucagcugaucuggcuggcuaggcagguguccccuuucuccuucaccgcuccaucugcgucccuccugaagcugcgcacuccau	chr14:90088236-90088455(+)$1	219	49	165	277.8387
acaucugucacuccauugaucgccaggguugauucggcugaucuggcuggcuaggcagguauccccuuccucccucacugcucuaugugccucccuccugaagcggugcucucaau	chr14:50535206-50535458(+)$1	252	102	218	273.8064
aaaucugucaccccauugaucgccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccacucuaugugagccccuccugaagcugcaugcucagu	chr5:109035341-109035583(-)$1	242	72	188	290.0967
acaucugucaccccauugaucgccagaguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccguuccaugugcgucccucccgaagcugcgugcucggu	chr13:99857917-99858166(+)$1	249	68	184	307.6774
acaucugucaucccauugaucuccaggguugauucagcugaucuggcuggcuaggcagguguccccuuucuccuucaccgcuccaucugcgucccuccugaagcugcgcacuccau	chr14:90088180-90088417(+)$1	237	105	221	277.8387
acaucuguuaccccauugaucgccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgcucggu	chr2:76672299-76672512(-)$1	213	0	116	311.3870
acaucugucaccccauugaucgccagaguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccguuccaugugcgucccucccgaagcugcgugcucggu	chr13:99857969-99858178(+)$1	209	16	132	307.6774
acaucugucaccccauugaucgccaggguugauucagcugaucuggcuggcuaggcagguguccccuuccucccucaccacuccaugugcaucccucccaaagcugcacgcucugu	chr9:77414756-77414963(+)$1	207	78	194	297.0322
acaucuguuaccccauugaucgccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgcucggu	chr2:76672388-76672617(-)$1	229	105	221	311.3870
acaucugucacuccauugauugccaggguugauucggcugaucuggcuggcuaggcgggugucccuuuccucccucaccgcuccaugugcgucccucccgaagcugugcacuuggu	chr17:70660068-70660345(-)$1	277	78	194	292.8387
acaucugucaccccauugaucgccaggguugauuuggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgcucggu	chr14:90178803-90179022(+)$1	219	75	191	311.7096
acaucugucaccccacugaucgccaggguugauucagcugaucuggcuggcuaggcggguguccccuucuucccucacugcuccaugugugccccucccgaagcugcaugcucggu	chr10:22221971-22222222(+)$1	251	124	240	290.9032
aaaucugucaccccauugaucgccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccacucuaugugagccccuccugaagcugcaugcucagu	chr5:109035383-109035635(-)$1	252	124	240	290.0967
acaucugucaccccauugaucgccaggguugauucggcugaucuggcuggcuagguggguguccccuuccuaccucaccgcuccaugugcgucccucccgaagcugcgcgcuccgu	chr16:81995440-81995692(+)$1	252	114	230	305.2580
acaucugucaccccauugauugccaggguugguucggcugaucuggcuggcuaggcggguguccccuuccucccucacugcuccaugugcgucccuccugaagcugugugcucggu	chr5:6848384-6848633(-)$1	249	82	198	299.4516
acaucugucaccccauugaucgccaggguugagucggcugaucuggcuggcuaggcggguguccccuuccucccucacugcuccaugugcaucccuccugaagcugcacaccaguc	chr11:16863699-16863978(+)$1	279	124	240	281.5483
acaucuguuaccccauugaucgccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgcucggu	chr2:76672312-76672546(-)$1	234	34	150	311.3870
acaucugucaccucauugaucgccaggguugauuugacugaucuggcuggcuaggcggguguccccuuccucccucaucacuccaugugcgucccucccaaagcugugugcuuggu	chr2:134353615-134353865(+)$1	250	70	186	284.7741
acaucugucaccccauugaucgccagaguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccguuccaugugcgucccucccgaagcugcgugcucggu	chr13:99857978-99858222(+)$1	244	7	123	307.6774
acaucugucaccccauugaucgcugggguugauucggcugaucuggcuggcuaggcaggugugcccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgcucggu	chr12:112704858-112705105(+)$1	247	46	162	298.9677
acaucugucaccccauugaucgccaggguugauucagcugaucuggcuggauagguaggugucuccuuccucucucaccgcuccaugugcgucccucccaaagcugcaugcuaggu	chr2:47586766-47587008(-)$1	242	112	228	284.2903
acaucugucaccccauugauugccagggaugacuugguugaccuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugagucccucccaaagcugugugcucggu	chr1:55842317-55842563(-)$1	246	64	180	280.2580
acaucugucacgccauugauugccaggguugauucgguugaucuugcuggcuagacggguguccccuuccucccucacugcuccacaugcgucccucccaaagcugcaugcuccau	chr4:7113986-7114227(-)$1	241	125	241	272.1935
acaucugucaccccauugaucgccaggguugauucggcugaucuggcuggcuagguggguguccccuuccuaccucaccgcuccaugugcgucccucccgaagcugcgcgcuccgu	chr16:81995542-81995790(+)$1	248	12	128	305.2580

#otherMatches

#Struct PSSM
444ffffff22aadddda22ggggggg]bb22ccc666666dddd]bb]ccc22a]bb]eeeeeccc]eeeeedddd:::::::ccc!!eeeeebbadddd[bbnnnnnbbdddd2	chr13:99857866-99858117(+)$1	251	119	235	307.6774
========="""ccc%%%%%%eeeeeeeeeellleeeee333eeeeeccc333==========abb333a]ggggggg333ccc::eeeee"""bbnnnnnbb]eeeee:::::::	chr9:77414748-77414952(+)$1	204	86	202	297.0322
=========[bbccc!!ddddffffffnnnnnffffff]ddddccc22bb333==========abb333a]ggggggg333ccc::ffffff!!bbnnnnnbb22ffffffFFFFF	chr14:90178775-90179003(+)$1	228	103	219	311.7096
========="""ccc%%%%%%eeeeeeeeeellleeeee333eeeeeccc333==========::::::::::::::DDDD}DDDD}DDDDDDDD}BB:ffffff[ffffff[ddd	chr8:144624203-144624473(+)$1	270	100	216	266.3870
========="""ccc%%%%%%ffffff[eeeeellleeeeeffffffccc333==========abb333a]ggggggg333dddd]bb666666eeeee88888888eeeee::::	chr5:6848433-6848662(-)$1	229	111	227	299.4516
[eeeeedddd!!ccc!!ddddccc[bboooooobbccc]ddddccc]dddd]eeeee22ccc7777777a]ggggggg333ffffff]eeeeeffffff"""ddddoooooodddd	chr18:1323910-1324170(-)$1	260	108	224	279.2903
========="""ccc%%%%%%eeeeeeeeeellleeeee333eeeeeccc333==========abb333a]ggggggg333ccc::eeeee"""bbnnnnnbb]eeeeebbooooo	chr9:77414752-77414956(+)$1	204	82	198	297.0322
::::::dddd[ccctttttttttttccc]dddd:eeeeennnnneeeeeBB}BB}EEEEEZZZEEEEEEEEEEZZZBB}FFFFFF::dddd[dddd[ffffffccc[a!!dddd[b	chr14:90088236-90088455(+)$1	219	49	165	277.8387
eemmmmeeeee]ccc22gggggggdddd!!bb"""bb"""eeeee[bbmmmmbb]eeeee333bb22bb22dddd::DDDDEEEEEYYDDDD:ffffff"""bb[bb[ddddammm	chr14:50535206-50535458(+)$1	252	102	218	273.8064
boooooobb]a]ccc22ggggggg::::::::::ggggggg[a!!bb[ddddccc[ccc[a++++++++++++eeeeeqqqqqqqqeeeeeaccc]ccc22ddddbb22a]ggggg	chr5:109035341-109035583(-)$1	242	72	188	290.0967
eemmmmeeeee]ccc22ddddffffffddddllldddd333ffffff:bb!!ccc[bbmmmmbbccc]bb:GGGGGGGZZZDDDDbb!!eeeeebbadddd[bbnnnnnbbdddd2	chr13:99857917-99858166(+)$1	249	68	184	307.6774
::::::dddd[ccctttttttttttccc]dddd:eeeeennnnneeeeeBB}BB}EEEEEZZZEEEEEYYDDDDYYFFFFFF}BB}EEEEE?????DDDDZZZCCC}AYYFFFFFF	chr14:90088180-90088417(+)$1	237	105	221	277.8387
::::::::::::::::::::::::FFFFFFKKEEEEEKKA{FFFFFF{BBKKBBDDDDDDDD{EEEEE:ddddbb"""bb####ccc!!eeeeebbadddd[bbnnnnnbbdddd2	chr2:76672299-76672512(-)$1	213	0	116	311.3870
eemmmmeeeee]ccc22ggggggg:::::::::ffffffnnnnnffffff:::EEEEEDDDD{DDDDeeeee!!bbdddd"""eeeeebb[bboooooobb]bb]eeeee22dddd	chr13:99857969-99858178(+)$1	209	16	132	307.6774
========="""ccc%%%%%%eeeeeeeeeellleeeee333eeeeeccc333==========abb333a]ggggggg333ccc::eeeee"""bbnnnnnbb]eeeeebb[cccn	chr9:77414756-77414963(+)$1	207	78	194	297.0322
========="""ccc%%%%%%eeeeeeeeeellleeeee333eeeeeccc333==========abb333a]ggggggg:::CCCZZZFFFFFFdddddddd[bbnnnnnbbdddd5	chr2:76672388-76672617(-)$1	229	105	221	311.3870
eemmmmeeeee]ccc22ggggggg::eeeeellleeeee::FFFFFF{BBKKBBDDDDDDDDEEEEE{BB::dddd!!bb!!ccc[eeeee"""bbnnnnnbb333eeeee]ccc]	chr17:70660068-70660345(-)$1	277	78	194	292.8387
=========[bbccc!!ddddffffffnnnnnffffff]ddddccc22bb333==========abb333a]ggggggg333ccc]ccc:eeeeebbadddd[bbnnnnnbbdddd2	chr14:90178803-90179022(+)$1	219	75	191	311.7096
========="""ccc%%%%%%eeeeeeeeeellleeeee333eeeeeccc333==========abb333iiiiiiiii:bbrrrrrrrrrbb:::DDDD}EEEEE~~~~DDDD:dd	chr10:22221971-22222222(+)$1	251	124	240	290.9032
boooooobb]a]ccc22ggggggg:::::::::::ffffff[a!!bb[ddddccc[ccc[a++++++++++++eeeeeqqqqqqqqeeeeeaccc]ccc22ddddbb22a]fffff	chr5:109035383-109035635(-)$1	252	124	240	290.0967
ccmmmmccc]a]ccc22ggggggg:FFFFFF::::ddddnnnnnddddbb!!gggggggrrrrrrrrrggggggg22bb:::::::ffffff!!bbnnnnnbb22ffffff::ddd	chr16:81995440-81995692(+)$1	252	114	230	305.2580
========="""ccc%%%%%%ffffff[eeeeellleeeeeffffffccc333==========abb333a]ggggggg333dddd:DDDDddddbbadddd[bbnnnnnbbdddd2	chr5:6848384-6848633(-)$1	249	82	198	299.4516
JJJJJJJJJdddduuuuuuuuuuuudddd::hhhhhhhhnnnnnhhhhhhhh:JJJJJJJJJJABB?????GGGGGGG?????CCC}FFFFFFdddd$$$$$ddddnnnnndddd4	chr11:16863699-16863978(+)$1	279	124	240	281.5483
========="""ccc%%%%%%eeeeeeeeeellleeeee333eeeeeccc333==========abb333a]ggggggg333ccc::CCCLLLDDDD{FFFFFFCCC:::::::eee	chr2:76672312-76672546(-)$1	234	34	150	311.3870
::::::ddddoooooodddd:eeeee####ddddnnnnndddd333eeeeeIIIIIIIII@@@@@@@@@@@@@@@@@DDDDGGGGGGG:cccdddd[ffffffccca[a[ccc[cc	chr2:134353615-134353865(+)$1	250	70	186	284.7741
eemmmmeeeee:BB{BB{CCCLLLFFFFFFKKBB{BBKKA{FFFFFF{BBKKBBDDDDDDDD{DDDDeeeee!!bbdddd"""eeeeebb[bboooooobb]bb]eeeee22dddd	chr13:99857978-99858222(+)$1	244	7	123	307.6774
ggggggddddeeeeeqqqqqqqqeeeee]dddd::BBKKA{FFFFFF{BBKKBBDDDDJJJJJJJJJJBB::dddd!!bb!!bb!!ffffff!!bbnnnnnbb22ffffff22bb]	chr12:112704858-112705105(+)$1	247	46	162	298.9677
========="""ccc%%%%%%eeeeeeeeeellleeeee333eeeeeccc333==========DDDDffffff[bbccc####eeeeebbuuuuuuuuuuuubb]eeeee333ccc	chr2:47586766-47587008(-)$1	242	112	228	284.2903
========="""ccc%%%%%%ffffff"""ccclllccc22ffffffccc333==========abb]bbiiiiiiiii:CCCAEEEEEKKDDDDLLLHHHHHHHHKKBB{CCCddd	chr1:55842317-55842563(-)$1	246	64	180	280.2580
=========!!dddd%%%%%%bb[iiiiiiiiillliiiiiiiiibbdddd22==========abb333a]ggggggg:bbpppppppbbEEEEE}DDDD:cccnnnnnccc::::	chr4:7113986-7114227(-)$1	241	125	241	272.1935
ccmmmmccc]a]ccc22ddddeeeeeeeeeellleeeee333eeeeeEEEEEgggggggrrrrrrrrrggggggg:::cccpppppppccc:dddd[ffffffccc[a!!dddd[b	chr16:81995542-81995790(+)$1	248	12	128	305.2580

#DB
...))))))..)))))))..))))))).))..)))......)))).)).)))..).)).)))))))).))))))))).......(((..((((((((((((.((.....)))))).	chr13:99857866-99858117(+)$1	1	119	235	307.6774
(((((((((...(((......((((((((((...)))))...))))))))...)))))))))))))...).)))))))...)))..(((((...((.....)).))))).......	chr9:77414748-77414952(+)$1	1	86	202	297.0322
(((((((((.(((((..((((((((((.....)))))).)))))))..))...)))))))))))))...).)))))))...)))..((((((..((.....))..)))))))))))	chr14:90178775-90179003(+)$1	1	103	219	311.7096
(((((((((...(((......((((((((((...)))))...))))))))...))))))))))..............)))).)))).)))))))).)).((((((.((((((.(((	chr8:144624203-144624473(+)$1	1	100	216	266.3870
(((((((((...(((......((((((.(((((...))))))))))))))...)))))))))))))...).)))))))...)))).))......)))))........)))))....	chr5:6848433-6848662(-)$1	1	111	227	299.4516
.(((((((((..(((..(((((((.((......))))).))))))).)))).)))))..))).......).)))))))...)))))).)))))((((((...((((......))))	chr18:1323910-1324170(-)$1	1	108	224	279.2903
(((((((((...(((......((((((((((...)))))...))))))))...)))))))))))))...).)))))))...)))..(((((...((.....)).)))))((.....	chr9:77414752-77414956(+)$1	1	82	198	297.0322
......((((.(((...........))).)))).(((((.....))))))).)).)))))...))))))))))...)).))))))..((((.((((.(((((((((.(..((((.(	chr14:90088236-90088455(+)$1	1	49	165	277.8387
((....))))).)))..)))))))((((..((...((...(((((.((....)).)))))...))..))..))))..)))))))))..)))).((((((...((.((.(((((...	chr14:50535206-50535458(+)$1	1	102	218	273.8064
(......)).).)))..)))))))..........(((((((.(..((.(((((((.(((.(............(((((........))))))))).)))..))))))..).)))))	chr5:109035341-109035583(-)$1	1	72	188	290.0967
((....))))).)))..))))((((((((((...))))...)))))).((..(((.((....))))).)).)))))))...))))((..((((((((((((.((.....)))))).	chr13:99857917-99858166(+)$1	1	68	184	307.6774
......((((.(((...........))).)))).(((((.....))))))).)).)))))...)))))..))))..)))))).)).))))).....))))...))).)..))))))	chr14:90088180-90088417(+)$1	1	105	221	277.8387
........................((((((..(((((..(.((((((.((..((((((((((.(((((.((((((...((....(((..((((((((((((.((.....)))))).	chr2:76672299-76672512(-)$1	1	0	116	311.3870
((....))))).)))..))))))).........((((((.....))))))...(((((((((.(((((((((..((((((...(((((((.((......)).)).)))))..))))	chr13:99857969-99858178(+)$1	1	16	132	307.6774
(((((((((...(((......((((((((((...)))))...))))))))...)))))))))))))...).)))))))...)))..(((((...((.....)).)))))((.(((.	chr9:77414756-77414963(+)$1	1	78	194	297.0322
(((((((((...(((......((((((((((...)))))...))))))))...)))))))))))))...).)))))))...)))...))))))((((((((.((.....)))))).	chr2:76672388-76672617(-)$1	1	105	221	311.3870
((....))))).)))..)))))))..(((((...)))))..((((((.((..(((((((((((((((.((..((((..((..(((.(((((...((.....))...))))).))).	chr17:70660068-70660345(-)$1	1	78	194	292.8387
(((((((((.(((((..((((((((((.....)))))).)))))))..))...)))))))))))))...).)))))))...))).))).((((((((((((.((.....)))))).	chr14:90178803-90179022(+)$1	1	75	191	311.7096
(((((((((...(((......((((((((((...)))))...))))))))...)))))))))))))...))))))))).((.........))...)))).)))))....)))).((	chr10:22221971-22222222(+)$1	1	124	240	290.9032
(......)).).)))..)))))))...........((((((.(..((.(((((((.(((.(............(((((........))))))))).)))..))))))..).)))))	chr5:109035383-109035635(-)$1	1	124	240	290.0967
((....))).).)))..))))))).((((((....((((.....))))((..(((((((.........)))))))..)).......((((((..((.....))..))))))..(((	chr16:81995440-81995692(+)$1	1	114	230	305.2580
(((((((((...(((......((((((.(((((...))))))))))))))...)))))))))))))...).)))))))...)))).))))(((((((((((.((.....)))))).	chr5:6848384-6848633(-)$1	1	82	198	299.4516
(((((((((((((............))))..((((((((.....)))))))).))))))))))))).....))))))).....))).))))))((((.....((((.....)))).	chr11:16863699-16863978(+)$1	1	124	240	281.5483
(((((((((...(((......((((((((((...)))))...))))))))...)))))))))))))...).)))))))...)))..(((...((((.(((((((((.......(((	chr2:76672312-76672546(-)$1	1	34	150	311.3870
......((((......)))).(((((....((((.....))))...)))))))))))))).................))))))))))).(((((((.((((((((((.(.(((.((	chr2:134353615-134353865(+)$1	1	70	186	284.7741
((....))))).((.((.(((...((((((..((.((..(.((((((.((..((((((((((.(((((((((..((((((...(((((((.((......)).)).)))))..))))	chr13:99857978-99858222(+)$1	1	7	123	307.6774
))))))(((((((((........))))).))))..((..(.((((((.((..((((((((((((((((((..((((..((..((..((((((..((.....))..))))))..)).	chr12:112704858-112705105(+)$1	1	46	162	298.9677
(((((((((...(((......((((((((((...)))))...))))))))...))))))))))))))((((((.(((((....(((((((............)).)))))...)))	chr2:47586766-47587008(-)$1	1	112	228	284.2903
(((((((((...(((......((((((...(((...)))..)))))))))...))))))))))))).))))))))))).(((((((((..((((...((((((((..((.((((((	chr1:55842317-55842563(-)$1	1	64	180	280.2580
(((((((((..((((......((.(((((((((...)))))))))))))))..)))))))))))))...).))))))).((.......))))))).)))).(((.....)))....	chr4:7113986-7114227(-)$1	1	125	241	272.1935
((....))).).)))..))))((((((((((...)))))...)))))((((((((((((.........)))))))...(((.......))).((((.(((((((((.(..((((.(	chr16:81995542-81995790(+)$1	1	12	128	305.2580

#PSSM
a : 0.99	
c : 0.93	a : 0.06	
a : 0.99	
u : 0.96	c : 0.03	
c : 0.99	
u : 0.99	
g : 0.99	
u : 0.99	
c : 0.90	u : 0.09	
a : 0.99	
c : 0.90	u : 0.09	
c : 0.90	u : 0.06	g : 0.03	
c : 0.96	u : 0.03	
c : 0.99	
a : 0.99	
u : 0.96	c : 0.03	
u : 0.99	
g : 0.99	
a : 0.99	
u : 0.99	
c : 0.83	u : 0.16	
g : 0.93	u : 0.06	
c : 0.99	
c : 0.96	u : 0.03	
a : 0.96	g : 0.03	
g : 0.99	
g : 0.87	a : 0.12	
g : 0.99	
u : 0.96	a : 0.03	
u : 0.99	
g : 0.99	
a : 0.93	g : 0.06	
u : 0.93	g : 0.03	c : 0.03	
u : 0.96	c : 0.03	
c : 0.87	u : 0.12	
g : 0.77	a : 0.22	
g : 0.96	a : 0.03	
c : 0.93	u : 0.06	
u : 0.99	
g : 0.99	
a : 0.99	
u : 0.96	c : 0.03	
c : 0.99	
u : 0.99	
g : 0.96	u : 0.03	
g : 0.99	
c : 0.96	u : 0.03	
u : 0.99	
g : 0.99	
g : 0.99	
c : 0.96	a : 0.03	
u : 0.99	
a : 0.99	
g : 0.99	
g : 0.96	a : 0.03	
c : 0.87	u : 0.12	
g : 0.74	a : 0.25	
g : 0.99	
g : 0.99	
u : 0.99	
g : 0.96	a : 0.03	
u : 0.99	
c : 0.96	g : 0.03	
c : 0.96	u : 0.03	
c : 0.99	
c : 0.96	u : 0.03	
u : 0.99	
u : 0.99	
c : 0.93	u : 0.06	
c : 0.96	u : 0.03	
u : 0.99	
c : 0.90	a : 0.06	u : 0.03	
c : 0.96	u : 0.03	
c : 0.93	u : 0.06	
u : 0.99	
c : 0.99	
a : 0.99	
c : 0.96	u : 0.03	
c : 0.77	u : 0.22	
g : 0.77	a : 0.19	u : 0.03	
c : 0.87	u : 0.12	
u : 0.99	
c : 0.96	u : 0.03	
c : 0.90	u : 0.09	
a : 0.99	
u : 0.93	a : 0.03	c : 0.03	
g : 0.90	c : 0.06	a : 0.03	
u : 0.99	
g : 0.99	
c : 0.83	a : 0.09	u : 0.06	
g : 0.83	a : 0.12	c : 0.03	
u : 0.90	c : 0.09	
c : 0.99	
c : 0.99	
c : 0.99	
u : 0.99	
c : 0.99	
c : 0.96	u : 0.03	
c : 0.70	u : 0.29	
g : 0.77	a : 0.22	
a : 0.99	
a : 0.99	
g : 0.99	
c : 0.99	
u : 0.96	g : 0.03	
g : 0.99	
c : 0.80	u : 0.19	
g : 0.64	a : 0.35	
c : 0.51	u : 0.45	g : 0.03	
g : 0.80	a : 0.12	c : 0.03	u : 0.03	
c : 0.96	u : 0.03	
u : 0.93	c : 0.06	
c : 0.83	a : 0.09	u : 0.06	
g : 0.61	c : 0.16	a : 0.12	u : 0.09	
g : 0.80	a : 0.12	u : 0.06	
u : 0.93	c : 0.06	

#score	9129.935483870971
#seq	31
#width	116
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_transcript_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
c$$$$$ddddqqqqqqqqdddd7777777ccc333ffffff333gggggggCCCHHHHHHHHLLLDDDDRRRRRRRRRJJJJJJJJJJJ:::A{A{EEEEE{A{DDDD{DDDD{Aeeeee[gggggggcccmmmmccc22ggggggg]eeeee:::::::dddd[bb[ffffff"""bb[ddddmmmmdddd]bb4444ffffffbbdddd:A}DDDD}DDDD}AEEEEE}A}A::eeeee[bbnnnnnbb]eeeeeJJJJJJJJJJJDDDD}HHHHHHHH}CCC::::	chr1:1193006-1193332(-)$1	326	19	308	867.0000

#DB
(.....((((........)))).......)))...))))))...)))))))(((((((((((...((((.........(((((((((((...(.(.(((((.(.((((.((((.((((((.((((((((((....)))..))))))).))))).......((((.((.((((((...((.((((....)))).))....)))))))))))).).)))).)))).)))))).).)..(((((.((.....)).)))))))))))))))))))).)))))))).)))....	chr1:1193006-1193332(-)$1	1	19	308	867.0000

#PSSM
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	

#score	867.0
#seq	1
#width	289
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_CDS_m3_run2.nuc.txt

#NT
GGCCUGG	chr1:6259438-6259753(-)$1	315	35	42	13.9166
UUCCUGG	chr20:60736533-60736775(+)$1	242	128	135	13.0833
GUCCUGG	chr2:214149186-214149485(+)$1	299	60	67	16.7500
GUUCUGG	chr16:89627846-89628113(+)$1	267	127	134	12.0833
GCCCUGG	chr10:102114250-102114526(+)$1	276	171	178	13.6666
CUCCUGG	chr5:137892042-137892302(-)$1	260	60	67	13.0833
GGCCUGG	chr20:44441936-44442227(+)$1	291	90	97	13.9166
guccuga	chr14:105225567-105225869(+)$1	302	88	95	12.5000
GUCUUGG	chr22:39708876-39709146(-)$1	270	80	87	12.5000
GUCCUGG	chr20:45852860-45853094(-)$1	234	150	157	16.7500
GUCCUGA	chr16:81726631-81726919(+)$1	288	207	214	12.5000
GUCCUGG	chr17:80047495-80047748(-)$1	253	150	157	16.7500
GACCUGG	chr7:99501080-99501346(-)$1	266	173	180	14.0000
GGCCUGG	chr6:119514806-119515051(-)$1	245	46	53	13.9166
CUCCUGG	chr19:45451684-45451923(+)$1	239	87	94	13.0833
GACCUGG	chr6:166737953-166738215(-)$1	262	185	192	14.0000
GUCCUGC	chr21:45387663-45387931(+)$1	268	188	195	12.4166
GUCCUGG	chr1:202300918-202301241(-)$1	323	286	293	16.7500
GUCCAGG	chrX:152914525-152914809(+)$1	284	74	81	12.2500
GUCGUGG	chr9:86585609-86585845(-)$1	236	129	136	12.3333
GACCUGG	chr1:151220203-151220471(+)$1	268	154	161	14.0000
UUCCUGG	chr14:36219510-36219788(-)$1	278	60	67	13.0833
GCCCUGG	chr3:49713550-49713795(+)$1	245	138	145	13.6666
UUCCUGG	chr11:111635477-111635793(-)$1	316	67	74	13.0833
GUCCUGC	chr2:3623377-3623582(+)$1	205	5	12	12.4166
GGCCUGG	chr6:31656376-31656702(-)$1	326	141	148	13.9166
GGCCUGG	chr17:73872741-73873046(-)$1	305	83	90	13.9166
GUCCUCG	chr17:56448128-56448373(-)$1	245	58	65	12.0833
GUCAUGG	chr16:89846187-89846469(-)$1	282	179	186	12.4166
GGCCUGG	chr16:29819093-29819346(+)$1	253	115	122	13.9166
GACCUGG	chr3:48577061-48577352(-)$1	291	8	15	14.0000
GUCCUGU	chr17:21206316-21206603(+)$1	287	142	149	12.3333
CUCCUGG	chr17:3494109-3494361(-)$1	252	28	35	13.0833
GUCUUGG	chr4:103730897-103731145(-)$1	248	121	128	12.5000
GUCCUGA	chr16:67227266-67227504(+)$1	238	201	208	12.5000
GUGCUGG	chr16:57784735-57784975(+)$1	240	173	180	12.1666
GUCCUUG	chr17:49238365-49238666(+)$1	301	145	152	12.0833
GUCUUGG	chr11:65401451-65401704(+)$1	253	55	62	12.5000
GACCUGG	chr16:1821042-1821343(-)$1	301	115	122	14.0000
GUCCUGG	chr16:28847914-28848192(+)$1	278	189	196	16.7500
GUCCUAG	chr9:139937392-139937719(-)$1	327	2	9	12.0833
GUGCUGG	chr2:27428734-27429014(-)$1	280	79	86	12.1666
CUCCUGG	chr11:116707755-116707993(-)$1	238	0	7	13.0833
GCCCUGG	chr1:227172541-227172779(+)$1	238	115	122	13.6666
UUCCUGG	chr7:23509383-23509668(-)$1	285	35	42	13.0833
GUCAUGG	chr19:54964590-54964835(+)$1	245	48	55	12.4166
UUCCUGG	chr1:92185310-92185559(-)$1	249	0	7	13.0833
GUCCUGG	chr12:57499212-57499548(-)$1	336	153	160	16.7500
GCCCUGG	chr19:2207469-2207710(+)$1	241	27	34	13.6666
GUCCUGG	chr19:51837418-51837743(-)$1	325	220	227	16.7500
GUCCAGG	chr2:28999572-28999866(+)$1	294	156	163	12.2500
GACCUGG	chr16:23490941-23491187(-)$1	246	86	93	14.0000
CUCCUGG	chr16:46918506-46918756(+)$1	250	174	181	13.0833
GUCCUGG	chr9:140150652-140150886(+)$1	234	19	26	16.7500
AUCCUGG	chr20:62292746-62293027(+)$1	281	62	69	12.7500
GACCUGG	chr22:30735002-30735356(-)$1	354	335	342	14.0000
GACCUGG	chr1:230841547-230841799(-)$1	252	50	57	14.0000
GUCCAGG	chr12:50480260-50480543(+)$1	283	190	197	12.2500
GGCCUGG	chr17:40970570-40970832(-)$1	262	60	67	13.9166

#otherMatches

#Struct PSSM
eee[fff	chr12:120568419-120568669(-)$1	250	25	32	16.7500
eeaa[cc	chr1:6259438-6259753(-)$1	315	35	42	13.9166
:HHHHHH	chr20:60736533-60736775(+)$1	242	128	135	13.0833
eeeee[a	chr2:214149186-214149485(+)$1	299	60	67	16.7500
c::::EE	chr16:89627846-89628113(+)$1	267	127	134	12.0833
occc333	chr10:102114250-102114526(+)$1	276	171	178	13.6666
IIMMMME	chr5:137892042-137892302(-)$1	260	60	67	13.0833
gggdddd	chr20:44441936-44442227(+)$1	291	90	97	13.9166
ggggggg	chr14:105225567-105225869(+)$1	302	88	95	12.5000
cc"""dd	chr22:39708876-39709146(-)$1	270	80	87	12.5000
a22eeee	chr20:45852860-45853094(-)$1	234	150	157	16.7500
ooooodd	chr16:81726631-81726919(+)$1	288	207	214	12.5000
::fffff	chr17:80047495-80047748(-)$1	253	150	157	16.7500
=======	chr7:99501080-99501346(-)$1	266	173	180	14.0000
CCCdddd	chr6:119514806-119515051(-)$1	245	46	53	13.9166
e]eeeee	chr19:45451684-45451923(+)$1	239	87	94	13.0833
ddd::ff	chr6:166737953-166738215(-)$1	262	185	192	14.0000
eeeebb[	chr21:45387663-45387931(+)$1	268	188	195	12.4166
offffff	chr1:202300918-202301241(-)$1	323	286	293	16.7500
eeee22c	chrX:152914525-152914809(+)$1	284	74	81	12.2500
h::CCCM	chr9:86585609-86585845(-)$1	236	129	136	12.3333
DDDDEEE	chr1:151220203-151220471(+)$1	268	154	161	14.0000
ddddooo	chr14:36219510-36219788(-)$1	278	60	67	13.0833
leeeeee	chr3:49713550-49713795(+)$1	245	138	145	13.6666
3ffffff	chr11:111635477-111635793(-)$1	316	67	74	13.0833
eeee[bb	chr2:3623377-3623582(+)$1	205	5	12	12.4166
bbeeeee	chr6:31656376-31656702(-)$1	326	141	148	13.9166
cc22fff	chr17:73872741-73873046(-)$1	305	83	90	13.9166
ffff:::	chr17:56448128-56448373(-)$1	245	58	65	12.0833
DDD}EEE	chr16:89846187-89846469(-)$1	282	179	186	12.4166
c]ccc22	chr16:29819093-29819346(+)$1	253	115	122	13.9166
DDD::cc	chr3:48577061-48577352(-)$1	291	8	15	14.0000
ggIIIII	chr17:21206316-21206603(+)$1	287	142	149	12.3333
NNNNNCC	chr17:3494109-3494361(-)$1	252	28	35	13.0833
a]fffff	chr4:103730897-103731145(-)$1	248	121	128	12.5000
::fffff	chr16:67227266-67227504(+)$1	238	201	208	12.5000
ccc[fff	chr16:57784735-57784975(+)$1	240	173	180	12.1666
a[cccll	chr17:49238365-49238666(+)$1	301	145	152	12.0833
3ccc]bb	chr11:65401451-65401704(+)$1	253	55	62	12.5000
[gggggg	chr16:1821042-1821343(-)$1	301	115	122	14.0000
f22dddd	chr16:28847914-28848192(+)$1	278	189	196	16.7500
dddmmmm	chr9:139937392-139937719(-)$1	327	2	9	12.0833
fff####	chr2:27428734-27429014(-)$1	280	79	86	12.1666
::::BB{	chr11:116707755-116707993(-)$1	238	0	7	13.0833
GGGGGGg	chr1:227172541-227172779(+)$1	238	115	122	13.6666
mdddd::	chr7:23509383-23509668(-)$1	285	35	42	13.0833
DDKKEEE	chr19:54964590-54964835(+)$1	245	48	55	12.4166
:::DDDD	chr1:92185310-92185559(-)$1	249	0	7	13.0833
dd[dddd	chr12:57499212-57499548(-)$1	336	153	160	16.7500
EEEEEKK	chr19:2207469-2207710(+)$1	241	27	34	13.6666
ddd!!ff	chr19:51837418-51837743(-)$1	325	220	227	16.7500
dddd22a	chr2:28999572-28999866(+)$1	294	156	163	12.2500
fffffff	chr16:23490941-23491187(-)$1	246	86	93	14.0000
gggg::h	chr16:46918506-46918756(+)$1	250	174	181	13.0833
KKBBEEE	chr9:140150652-140150886(+)$1	234	19	26	16.7500
2dddda[	chr20:62292746-62293027(+)$1	281	62	69	12.7500
YYBBHHH	chr22:30735002-30735356(-)$1	354	335	342	14.0000
H{EEEEE	chr1:230841547-230841799(-)$1	252	50	57	14.0000
EEEEE:g	chr12:50480260-50480543(+)$1	283	190	197	12.2500
a]adddd	chr17:40970570-40970832(-)$1	262	60	67	13.9166

#DB
(((.(((	chr12:120568419-120568669(-)$1	1	25	32	16.7500
((((.((	chr1:6259438-6259753(-)$1	1	35	42	13.9166
.))))))	chr20:60736533-60736775(+)$1	1	128	135	13.0833
(((((.(	chr2:214149186-214149485(+)$1	1	60	67	16.7500
)....((	chr16:89627846-89628113(+)$1	1	127	134	12.0833
.)))...	chr10:102114250-102114526(+)$1	1	171	178	13.6666
((....(	chr5:137892042-137892302(-)$1	1	60	67	13.0833
)))((((	chr20:44441936-44442227(+)$1	1	90	97	13.9166
(((((((	chr14:105225567-105225869(+)$1	1	88	95	12.5000
((...((	chr22:39708876-39709146(-)$1	1	80	87	12.5000
)..))))	chr20:45852860-45853094(-)$1	1	150	157	16.7500
.....))	chr16:81726631-81726919(+)$1	1	207	214	12.5000
..(((((	chr17:80047495-80047748(-)$1	1	150	157	16.7500
)))))))	chr7:99501080-99501346(-)$1	1	173	180	14.0000
(((((((	chr6:119514806-119515051(-)$1	1	46	53	13.9166
).)))))	chr19:45451684-45451923(+)$1	1	87	94	13.0833
)))..((	chr6:166737953-166738215(-)$1	1	185	192	14.0000
((((((.	chr21:45387663-45387931(+)$1	1	188	195	12.4166
.))))))	chr1:202300918-202301241(-)$1	1	286	293	16.7500
))))..)	chrX:152914525-152914809(+)$1	1	74	81	12.2500
)..(((.	chr9:86585609-86585845(-)$1	1	129	136	12.3333
(((((((	chr1:151220203-151220471(+)$1	1	154	161	14.0000
((((...	chr14:36219510-36219788(-)$1	1	60	67	13.0833
.))))))	chr3:49713550-49713795(+)$1	1	138	145	13.6666
.))))))	chr11:111635477-111635793(-)$1	1	67	74	13.0833
((((.((	chr2:3623377-3623582(+)$1	1	5	12	12.4166
(((((((	chr6:31656376-31656702(-)$1	1	141	148	13.9166
))..)))	chr17:73872741-73873046(-)$1	1	83	90	13.9166
))))...	chr17:56448128-56448373(-)$1	1	58	65	12.0833
))).)))	chr16:89846187-89846469(-)$1	1	179	186	12.4166
).)))..	chr16:29819093-29819346(+)$1	1	115	122	13.9166
(((..((	chr3:48577061-48577352(-)$1	1	8	15	14.0000
)))))))	chr17:21206316-21206603(+)$1	1	142	149	12.3333
.....((	chr17:3494109-3494361(-)$1	1	28	35	13.0833
).)))))	chr4:103730897-103731145(-)$1	1	121	128	12.5000
..(((((	chr16:67227266-67227504(+)$1	1	201	208	12.5000
(((.(((	chr16:57784735-57784975(+)$1	1	173	180	12.1666
(.(((..	chr17:49238365-49238666(+)$1	1	145	152	12.0833
.))).))	chr11:65401451-65401704(+)$1	1	55	62	12.5000
.((((((	chr16:1821042-1821343(-)$1	1	115	122	14.0000
)..))))	chr16:28847914-28848192(+)$1	1	189	196	16.7500
(((....	chr9:139937392-139937719(-)$1	1	2	9	12.0833
(((....	chr2:27428734-27429014(-)$1	1	79	86	12.1666
....((.	chr11:116707755-116707993(-)$1	1	0	7	13.0833
))))))(	chr1:227172541-227172779(+)$1	1	115	122	13.6666
.))))..	chr7:23509383-23509668(-)$1	1	35	42	13.0833
((..(((	chr19:54964590-54964835(+)$1	1	48	55	12.4166
...((((	chr1:92185310-92185559(-)$1	1	0	7	13.0833
((.((((	chr12:57499212-57499548(-)$1	1	153	160	16.7500
(((((..	chr19:2207469-2207710(+)$1	1	27	34	13.6666
(((..((	chr19:51837418-51837743(-)$1	1	220	227	16.7500
))))..)	chr2:28999572-28999866(+)$1	1	156	163	12.2500
)((((((	chr16:23490941-23491187(-)$1	1	86	93	14.0000
))))..(	chr16:46918506-46918756(+)$1	1	174	181	13.0833
..(((((	chr9:140150652-140150886(+)$1	1	19	26	16.7500
.))))(.	chr20:62292746-62293027(+)$1	1	62	69	12.7500
..)))))	chr22:30735002-30735356(-)$1	1	335	342	14.0000
(.(((((	chr1:230841547-230841799(-)$1	1	50	57	14.0000
))))).(	chr12:50480260-50480543(+)$1	1	190	197	12.2500
).)))))	chr17:40970570-40970832(-)$1	1	60	67	13.9166

#PSSM
G : 0.80	U : 0.08	C : 0.08	g : 0.01	A : 0.01	
U : 0.66	A : 0.13	G : 0.11	C : 0.06	u : 0.01	
C : 0.93	G : 0.03	U : 0.01	c : 0.01	
C : 0.88	U : 0.05	A : 0.03	c : 0.01	G : 0.01	
U : 0.93	A : 0.05	u : 0.01	
G : 0.93	g : 0.01	C : 0.01	U : 0.01	A : 0.01	
G : 0.90	A : 0.03	C : 0.03	a : 0.01	U : 0.01	

#score	817.1666666666679
#seq	60
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_UTR_m3_run1.nuc.txt

#NT
GGCU	chr20:62330573-62330809(-)$1	236	15	19	12.0000
GGCU	chr20:62331361-62331608(-)$1	247	17	21	12.0000
GGCU	chr22:22899608-22899822(-)$1	214	46	50	12.0000
GGCU	chr11:404655-404968(+)$1	313	5	9	12.0000
GGCU	chr17:46656339-46656639(-)$1	300	105	109	12.0000
GGCU	chr12:123463973-123464267(+)$1	294	18	22	12.0000
GGCU	chr10:102760142-102760393(+)$1	251	14	18	12.0000
GGCU	chr4:78078359-78078623(+)$1	264	19	23	12.0000
ggcu	chr19:1585121-1585374(-)$1	253	48	52	12.0000
GGCU	chr17:73775232-73775536(-)$1	304	76	80	12.0000
GGCU	chr16:88718465-88718710(-)$1	245	57	61	12.0000
GGCU	chr1:26232505-26232755(-)$1	250	40	44	12.0000
GGCU	chr15:64752848-64753082(+)$1	234	129	133	12.0000
ggcu	chr22:50013315-50013554(-)$1	239	26	30	12.0000
GGCU	chr1:2122240-2122565(-)$1	325	17	21	12.0000
GGCU	chr7:2294045-2294323(-)$1	278	36	40	12.0000
GGCU	chr12:109124483-109124811(-)$1	328	8	12	12.0000
GGCU	chr19:47778061-47778339(+)$1	278	105	109	12.0000
GGCU	chr2:27249713-27249969(+)$1	256	4	8	12.0000
GGCU	chr12:113826716-113826981(+)$1	265	71	75	12.0000
ggcU	chr2:128144938-128145250(-)$1	312	25	29	12.0000
GGCU	chr1:1208163-1208424(-)$1	261	54	58	12.0000
GGCU	chr19:34287188-34287432(+)$1	244	78	82	12.0000
GGCU	chr17:73233947-73234202(-)$1	255	132	136	12.0000
GGCU	chr22:22899598-22899808(-)$1	210	32	36	12.0000
GGCU	chr1:155242891-155243133(-)$1	242	157	161	12.0000
GGCU	chr19:49605885-49606147(+)$1	262	38	42	12.0000
GGCU	chr19:36245871-36246168(+)$1	297	128	132	12.0000
GGCU	chr17:79866767-79867103(-)$1	336	52	56	12.0000
GGCU	chr12:109124823-109125120(-)$1	297	27	31	12.0000
GGCU	chr16:1413719-1414009(-)$1	290	91	95	12.0000
GGCU	chr13:113539264-113539514(+)$1	250	16	20	12.0000
GGCU	chr2:97525466-97525717(-)$1	251	59	63	12.0000
GGCU	chr20:62331315-62331556(-)$1	241	66	70	12.0000
GGCU	chr2:220403040-220403330(+)$1	290	106	110	12.0000
GGCU	chr12:123997831-123998077(-)$1	246	18	22	12.0000
GGCU	chr7:100170869-100171109(-)$1	240	26	30	12.0000
GGCU	chr12:113826631-113826898(+)$1	267	156	160	12.0000
GGCU	chr5:68664911-68665167(-)$1	256	89	93	12.0000
GGCU	chr16:725959-726250(+)$1	291	50	54	12.0000
GGCU	chr11:77929184-77929439(-)$1	255	24	28	12.0000
ggcU	chr7:140178737-140179006(-)$1	269	21	25	12.0000
GGCU	chr22:24313517-24313830(-)$1	313	125	129	12.0000
GGCU	chr17:47126752-47127036(+)$1	284	162	166	12.0000
GGCU	chr19:1881842-1882094(-)$1	252	26	30	12.0000
GGCU	chr12:132402869-132403140(+)$1	271	5	9	12.0000
GGCU	chr19:10464523-10464772(-)$1	249	36	40	12.0000
GGCU	chr17:46137487-46137727(+)$1	240	203	207	12.0000
GGCU	chr10:102761296-102761555(+)$1	259	57	61	12.0000
GGCU	chr3:195635379-195635673(-)$1	294	5	9	12.0000
GGCU	chr22:18573500-18573799(+)$1	299	73	77	12.0000
GGCU	chr20:60709627-60709917(+)$1	290	189	193	12.0000
GGCU	chr11:64511561-64511862(-)$1	301	98	102	12.0000
GGCU	chr12:132402729-132403001(+)$1	272	34	38	12.0000
GGCU	chr14:32546299-32546560(+)$1	261	114	118	12.0000
GGCU	chr19:54971683-54971960(+)$1	277	119	123	12.0000
GGCU	chr11:61197015-61197330(-)$1	315	170	174	12.0000
GGCU	chr11:1774034-1774311(-)$1	277	37	41	12.0000
GGCU	chr2:196522002-196522304(+)$1	302	124	128	12.0000
GGCU	chr17:79876115-79876408(-)$1	293	11	15	12.0000
GGCU	chr16:447698-447953(+)$1	255	180	184	12.0000
GGCU	chr19:47724075-47724363(-)$1	288	39	43	12.0000
ggcu	chr5:109025286-109025542(+)$1	256	243	247	12.0000
ggcu	chr19:1883620-1883878(-)$1	258	3	7	12.0000
GGCU	chr15:91446097-91446422(+)$1	325	135	139	12.0000
GGCU	chr12:56554114-56554409(+)$1	295	56	60	12.0000
GGCU	chr3:195635815-195636082(-)$1	267	4	8	12.0000
GGCU	chr10:74035257-74035534(+)$1	277	20	24	12.0000
GGCU	chr2:48010954-48011223(+)$1	269	200	204	12.0000
GGCU	chr21:45735929-45736232(+)$1	303	119	123	12.0000
GGCU	chr15:89441841-89442125(-)$1	284	152	156	12.0000
GGCU	chr12:113826936-113827184(+)$1	248	85	89	12.0000
ggcu	chr22:22899696-22899932(-)$1	236	14	18	12.0000
GGCU	chr22:19711777-19712001(+)$1	224	70	74	12.0000
GGCU	chrX:11776553-11776840(+)$1	287	31	35	12.0000
GGCU	chr12:56632206-56632447(-)$1	241	130	134	12.0000
GGCU	chr19:48984100-48984372(+)$1	272	34	38	12.0000
GGCU	chr6:31638689-31638994(+)$1	305	77	81	12.0000
GGCU	chr16:90015683-90015957(+)$1	274	0	4	12.0000
GGCU	chr19:40737794-40738043(-)$1	249	76	80	12.0000
GGCU	chr21:46270353-46270665(-)$1	312	67	71	12.0000
GGCU	chr7:77166748-77166983(+)$1	235	51	55	12.0000

#otherMatches

#Struct PSSM
cccc	chr22:32021714-32021968(-)$1	254	88	92	12.0000
a[gg	chr20:62330573-62330809(-)$1	236	15	19	12.0000
GGGG	chr20:62331361-62331608(-)$1	247	17	21	12.0000
ffff	chr22:22899608-22899822(-)$1	214	46	50	12.0000
EEEE	chr11:404655-404968(+)$1	313	5	9	12.0000
]ccc	chr17:46656339-46656639(-)$1	300	105	109	12.0000
ccc[	chr12:123463973-123464267(+)$1	294	18	22	12.0000
gggg	chr10:102760142-102760393(+)$1	251	14	18	12.0000
e:ee	chr4:78078359-78078623(+)$1	264	19	23	12.0000
GGGG	chr19:1585121-1585374(-)$1	253	48	52	12.0000
hhhh	chr17:73775232-73775536(-)$1	304	76	80	12.0000
ffff	chr16:88718465-88718710(-)$1	245	57	61	12.0000
nbb2	chr1:26232505-26232755(-)$1	250	40	44	12.0000
b[dd	chr15:64752848-64753082(+)$1	234	129	133	12.0000
ee::	chr22:50013315-50013554(-)$1	239	26	30	12.0000
JJJJ	chr1:2122240-2122565(-)$1	325	17	21	12.0000
mmmf	chr7:2294045-2294323(-)$1	278	36	40	12.0000
KKGG	chr12:109124483-109124811(-)$1	328	8	12	12.0000
dddd	chr19:47778061-47778339(+)$1	278	105	109	12.0000
ffff	chr2:27249713-27249969(+)$1	256	4	8	12.0000
eee]	chr12:113826716-113826981(+)$1	265	71	75	12.0000
!!dd	chr2:128144938-128145250(-)$1	312	25	29	12.0000
22cc	chr1:1208163-1208424(-)$1	261	54	58	12.0000
:eee	chr19:34287188-34287432(+)$1	244	78	82	12.0000
f"""	chr17:73233947-73234202(-)$1	255	132	136	12.0000
dddd	chr22:22899598-22899808(-)$1	210	32	36	12.0000
nnnn	chr1:155242891-155243133(-)$1	242	157	161	12.0000
:eee	chr19:49605885-49606147(+)$1	262	38	42	12.0000
::ff	chr19:36245871-36246168(+)$1	297	128	132	12.0000
eeee	chr17:79866767-79867103(-)$1	336	52	56	12.0000
::dd	chr12:109124823-109125120(-)$1	297	27	31	12.0000
eeee	chr16:1413719-1414009(-)$1	290	91	95	12.0000
GGG{	chr13:113539264-113539514(+)$1	250	16	20	12.0000
dddd	chr2:97525466-97525717(-)$1	251	59	63	12.0000
mmmm	chr20:62331315-62331556(-)$1	241	66	70	12.0000
FFFF	chr2:220403040-220403330(+)$1	290	106	110	12.0000
dddm	chr12:123997831-123998077(-)$1	246	18	22	12.0000
GGGG	chr7:100170869-100171109(-)$1	240	26	30	12.0000
eee]	chr12:113826631-113826898(+)$1	267	156	160	12.0000
FFFF	chr5:68664911-68665167(-)$1	256	89	93	12.0000
III:	chr16:725959-726250(+)$1	291	50	54	12.0000
$$ee	chr11:77929184-77929439(-)$1	255	24	28	12.0000
E{CC	chr7:140178737-140179006(-)$1	269	21	25	12.0000
dd]a	chr22:24313517-24313830(-)$1	313	125	129	12.0000
ffff	chr17:47126752-47127036(+)$1	284	162	166	12.0000
gsss	chr19:1881842-1882094(-)$1	252	26	30	12.0000
lldd	chr12:132402869-132403140(+)$1	271	5	9	12.0000
ffff	chr19:10464523-10464772(-)$1	249	36	40	12.0000
hhhh	chr17:46137487-46137727(+)$1	240	203	207	12.0000
gggq	chr10:102761296-102761555(+)$1	259	57	61	12.0000
FFFF	chr3:195635379-195635673(-)$1	294	5	9	12.0000
eeee	chr22:18573500-18573799(+)$1	299	73	77	12.0000
gggg	chr20:60709627-60709917(+)$1	290	189	193	12.0000
hhhh	chr11:64511561-64511862(-)$1	301	98	102	12.0000
dddd	chr12:132402729-132403001(+)$1	272	34	38	12.0000
!!ff	chr14:32546299-32546560(+)$1	261	114	118	12.0000
HHHH	chr19:54971683-54971960(+)$1	277	119	123	12.0000
::CC	chr11:61197015-61197330(-)$1	315	170	174	12.0000
hhh:	chr11:1774034-1774311(-)$1	277	37	41	12.0000
22cc	chr2:196522002-196522304(+)$1	302	124	128	12.0000
EEEK	chr17:79876115-79876408(-)$1	293	11	15	12.0000
gggg	chr16:447698-447953(+)$1	255	180	184	12.0000
cccm	chr19:47724075-47724363(-)$1	288	39	43	12.0000
GG||	chr5:109025286-109025542(+)$1	256	243	247	12.0000
BBEE	chr19:1883620-1883878(-)$1	258	3	7	12.0000
CCC:	chr15:91446097-91446422(+)$1	325	135	139	12.0000
eemm	chr12:56554114-56554409(+)$1	295	56	60	12.0000
GGGG	chr3:195635815-195636082(-)$1	267	4	8	12.0000
lggg	chr10:74035257-74035534(+)$1	277	20	24	12.0000
b]dd	chr2:48010954-48011223(+)$1	269	200	204	12.0000
fff:	chr21:45735929-45736232(+)$1	303	119	123	12.0000
ggg:	chr15:89441841-89442125(-)$1	284	152	156	12.0000
GGDD	chr12:113826936-113827184(+)$1	248	85	89	12.0000
dddm	chr22:22899696-22899932(-)$1	236	14	18	12.0000
dddd	chr22:19711777-19712001(+)$1	224	70	74	12.0000
[hhh	chrX:11776553-11776840(+)$1	287	31	35	12.0000
ddd]	chr12:56632206-56632447(-)$1	241	130	134	12.0000
iiii	chr19:48984100-48984372(+)$1	272	34	38	12.0000
ggg:	chr6:31638689-31638994(+)$1	305	77	81	12.0000
GGGG	chr16:90015683-90015957(+)$1	274	0	4	12.0000
EEEK	chr19:40737794-40738043(-)$1	249	76	80	12.0000
JJKK	chr21:46270353-46270665(-)$1	312	67	71	12.0000
22dd	chr7:77166748-77166983(+)$1	235	51	55	12.0000

#DB
))))	chr22:32021714-32021968(-)$1	1	88	92	12.0000
(.((	chr20:62330573-62330809(-)$1	1	15	19	12.0000
((((	chr20:62331361-62331608(-)$1	1	17	21	12.0000
))))	chr22:22899608-22899822(-)$1	1	46	50	12.0000
((((	chr11:404655-404968(+)$1	1	5	9	12.0000
.)))	chr17:46656339-46656639(-)$1	1	105	109	12.0000
(((.	chr12:123463973-123464267(+)$1	1	18	22	12.0000
((((	chr10:102760142-102760393(+)$1	1	14	18	12.0000
).((	chr4:78078359-78078623(+)$1	1	19	23	12.0000
((((	chr19:1585121-1585374(-)$1	1	48	52	12.0000
((((	chr17:73775232-73775536(-)$1	1	76	80	12.0000
((((	chr16:88718465-88718710(-)$1	1	57	61	12.0000
.)).	chr1:26232505-26232755(-)$1	1	40	44	12.0000
(.((	chr15:64752848-64753082(+)$1	1	129	133	12.0000
))..	chr22:50013315-50013554(-)$1	1	26	30	12.0000
((((	chr1:2122240-2122565(-)$1	1	17	21	12.0000
...)	chr7:2294045-2294323(-)$1	1	36	40	12.0000
..((	chr12:109124483-109124811(-)$1	1	8	12	12.0000
))))	chr19:47778061-47778339(+)$1	1	105	109	12.0000
((((	chr2:27249713-27249969(+)$1	1	4	8	12.0000
))).	chr12:113826716-113826981(+)$1	1	71	75	12.0000
..((	chr2:128144938-128145250(-)$1	1	25	29	12.0000
..))	chr1:1208163-1208424(-)$1	1	54	58	12.0000
.(((	chr19:34287188-34287432(+)$1	1	78	82	12.0000
(...	chr17:73233947-73234202(-)$1	1	132	136	12.0000
))))	chr22:22899598-22899808(-)$1	1	32	36	12.0000
....	chr1:155242891-155243133(-)$1	1	157	161	12.0000
.(((	chr19:49605885-49606147(+)$1	1	38	42	12.0000
..((	chr19:36245871-36246168(+)$1	1	128	132	12.0000
((((	chr17:79866767-79867103(-)$1	1	52	56	12.0000
..((	chr12:109124823-109125120(-)$1	1	27	31	12.0000
((((	chr16:1413719-1414009(-)$1	1	91	95	12.0000
(((.	chr13:113539264-113539514(+)$1	1	16	20	12.0000
((((	chr2:97525466-97525717(-)$1	1	59	63	12.0000
....	chr20:62331315-62331556(-)$1	1	66	70	12.0000
((((	chr2:220403040-220403330(+)$1	1	106	110	12.0000
(((.	chr12:123997831-123998077(-)$1	1	18	22	12.0000
((((	chr7:100170869-100171109(-)$1	1	26	30	12.0000
))).	chr12:113826631-113826898(+)$1	1	156	160	12.0000
))))	chr5:68664911-68665167(-)$1	1	89	93	12.0000
(((.	chr16:725959-726250(+)$1	1	50	54	12.0000
..((	chr11:77929184-77929439(-)$1	1	24	28	12.0000
(.((	chr7:140178737-140179006(-)$1	1	21	25	12.0000
)).)	chr22:24313517-24313830(-)$1	1	125	129	12.0000
((((	chr17:47126752-47127036(+)$1	1	162	166	12.0000
(...	chr19:1881842-1882094(-)$1	1	26	30	12.0000
..))	chr12:132402869-132403140(+)$1	1	5	9	12.0000
((((	chr19:10464523-10464772(-)$1	1	36	40	12.0000
((((	chr17:46137487-46137727(+)$1	1	203	207	12.0000
(((.	chr10:102761296-102761555(+)$1	1	57	61	12.0000
((((	chr3:195635379-195635673(-)$1	1	5	9	12.0000
((((	chr22:18573500-18573799(+)$1	1	73	77	12.0000
((((	chr20:60709627-60709917(+)$1	1	189	193	12.0000
))))	chr11:64511561-64511862(-)$1	1	98	102	12.0000
((((	chr12:132402729-132403001(+)$1	1	34	38	12.0000
..((	chr14:32546299-32546560(+)$1	1	114	118	12.0000
((((	chr19:54971683-54971960(+)$1	1	119	123	12.0000
..))	chr11:61197015-61197330(-)$1	1	170	174	12.0000
))).	chr11:1774034-1774311(-)$1	1	37	41	12.0000
..))	chr2:196522002-196522304(+)$1	1	124	128	12.0000
(((.	chr17:79876115-79876408(-)$1	1	11	15	12.0000
((((	chr16:447698-447953(+)$1	1	180	184	12.0000
(((.	chr19:47724075-47724363(-)$1	1	39	43	12.0000
))..	chr5:109025286-109025542(+)$1	1	243	247	12.0000
((((	chr19:1883620-1883878(-)$1	1	3	7	12.0000
))).	chr15:91446097-91446422(+)$1	1	135	139	12.0000
((..	chr12:56554114-56554409(+)$1	1	56	60	12.0000
((((	chr3:195635815-195636082(-)$1	1	4	8	12.0000
.)))	chr10:74035257-74035534(+)$1	1	20	24	12.0000
).))	chr2:48010954-48011223(+)$1	1	200	204	12.0000
))).	chr21:45735929-45736232(+)$1	1	119	123	12.0000
))).	chr15:89441841-89442125(-)$1	1	152	156	12.0000
((((	chr12:113826936-113827184(+)$1	1	85	89	12.0000
(((.	chr22:22899696-22899932(-)$1	1	14	18	12.0000
))))	chr22:19711777-19712001(+)$1	1	70	74	12.0000
.(((	chrX:11776553-11776840(+)$1	1	31	35	12.0000
))).	chr12:56632206-56632447(-)$1	1	130	134	12.0000
((((	chr19:48984100-48984372(+)$1	1	34	38	12.0000
))).	chr6:31638689-31638994(+)$1	1	77	81	12.0000
((((	chr16:90015683-90015957(+)$1	1	0	4	12.0000
(((.	chr19:40737794-40738043(-)$1	1	76	80	12.0000
((..	chr21:46270353-46270665(-)$1	1	67	71	12.0000
..))	chr7:77166748-77166983(+)$1	1	51	55	12.0000

#PSSM
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	
C : 0.91	c : 0.08	
U : 0.93	u : 0.06	

#score	996.0000000000002
#seq	83
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_transcript_m1_run2.nuc.txt

#NT
cggccgggugccgggcggggg	chr6:16760790-16761049(-)$1	259	230	251	19.6071
GGGGGCGGGGGUGAGGGUGGG	chr17:75346723-75346990(+)$1	267	104	125	22.7321
GGGGGCCGGGCAGGACCGGGA	chr10:80829176-80829416(+)$1	240	193	214	19.6964
ggcguggggggcgggcggggg	chr7:43945677-43946029(-)$1	352	57	78	25.4107
Gggggcggggcugggcgcggg	chrX:128656764-128657091(-)$1	327	113	134	29.6964
gugggggagccggggcggggg	chr1:22379330-22379638(+)$1	308	90	111	21.9285
GGAGGCGGAGCGGGGGCCGGC	chrX:20284118-20284386(-)$1	268	7	28	22.1071
agcggccggugggggcggggc	chr2:47402947-47403221(-)$1	274	243	264	20.9464
GGGGAGGGGUCGGGGUGGGGG	chr11:486193-486494(+)$1	301	95	116	27.0178
GGGGCAGCGGGAGGGGGCGGC	chr10:124134510-124134802(+)$1	292	58	79	20.5892
GGCGACCCGGCUGGGCGUGGC	chr22:32340759-32341008(+)$1	249	149	170	20.2321
GAGGGGGCGGCGGGCCGGGCC	chr15:93426447-93426787(+)$1	340	46	67	19.6071
GGGUCGCGGGCUGCGCAGGGC	chr7:105028274-105028536(-)$1	262	110	131	19.8749
gcgcgcggggcgcggcgggUC	chr17:79917503-79917747(-)$1	244	116	137	20.3214
GGGAGCGGGGCCGGGGCGAGC	chr8:61592436-61592682(+)$1	246	94	115	22.3749
gcggccggggccgggcgggcg	chr1:167190580-167190834(+)$1	254	69	90	23.4464
gcggggguggcggggcggggg	chr2:74212364-74212613(+)$1	249	90	111	25.8571
GGCCAGGGGGCAGGGGAGGGC	chr17:36760916-36761165(-)$1	249	0	21	21.1249
GGUGCCGGGGAGGUGCGGAGG	chr9:140513757-140513979(+)$1	222	106	127	21.0357
GGCGGUggcccggggcggggg	chr13:33160835-33161105(+)$1	270	74	95	22.8214
ggggcgcaggcgggggggggg	chr20:47804182-47804414(-)$1	232	78	99	25.4999
ggagccggggcggggagggga	chr20:60813656-60813941(+)$1	285	74	95	27.9999
gggguccgcgcggcgggcggc	chr9:138371785-138372061(+)$1	276	47	68	22.1071
ggcggcgggccggggcggcgc	chr2:231902513-231902748(+)$1	235	170	191	26.7499
GGCGUCGGGUCUGGGCGCGGG	chr6:158244659-158244908(+)$1	249	39	60	22.4642
CGGGCCGGUGCGGCCUGGGGC	chr2:20549951-20550293(-)$1	342	65	86	19.5178
gggcugggguccgagcggggc	chr20:40246776-40247044(-)$1	268	216	237	21.6607
GGGGCGGGGGAGGGGAGUGGC	chr1:22379675-22379920(+)$1	245	85	106	26.7500
GGGGGCAGGGCGGCGGGGAGG	chr6:37787966-37788232(+)$1	266	100	121	24.4285
gggggcggggcgggcgagcgC	chr2:47402806-47403076(-)$1	270	108	129	24.2499
ggcgcggggggugcgcgggUC	chr16:692267-692529(+)$1	262	114	135	21.5714
gggucggggucggagccgggc	chr8:145687815-145688067(-)$1	252	103	124	21.5714
GGGAGCGGGUGGGCGGGCGGC	chr7:73015097-73015353(-)$1	256	98	119	21.3035
GGGCAcagggcugggaggggc	chr17:80019760-80020013(-)$1	253	22	43	23.8928
GGAGUgggggcggccgggggc	chr3:176914702-176914974(-)$1	272	89	110	23.9821
ggcggcggggggaggcggagc	chr16:24551130-24551370(+)$1	240	116	137	23.8928
ggcggcgggggcgcgcggugc	chr8:61591897-61592160(+)$1	263	26	47	23.1785
ggggacggggcggggcggggc	chr17:79790807-79791110(-)$1	303	23	44	35.0535
UGCGGGGGGGGGGGGGGGGGC	chr17:73900659-73900953(-)$1	294	82	103	25.7678
ggcgccgggacggggcgcggg	chr8:131455386-131455654(-)$1	268	42	63	25.5000
ggggccggggcggcgggccgg	chr21:16436710-16436947(-)$1	237	72	93	24.6964
gggggcggggugcggagcggg	chr17:36955687-36955938(-)$1	251	34	55	22.8214
GGCGGGCGCGGGGGGAGGGGC	chr8:103424223-103424465(-)$1	242	84	105	22.6428
GGGAAGGGGGCCGGGCGCCGC	chr19:42757962-42758194(-)$1	232	111	132	21.7499
GGGAgcccggcgggcgggggc	chr1:90287242-90287481(+)$1	239	111	132	21.5714
ggcggcggggaggaggggggu	chr7:101459365-101459627(+)$1	262	111	132	24.2499
GCGGCGGCGGUUGGGCCGGGC	chr3:47204917-47205177(-)$1	260	60	81	18.1785
GGGGCCCGGGGUGGGGGGGGC	chr20:30946567-30946831(+)$1	264	97	118	27.1071
CGGGGCAGGGCGGGGAGGGGC	chr2:178129074-178129346(-)$1	272	240	261	26.6607
gggcagggcgcgggcgggggc	chr4:38666222-38666484(+)$1	262	167	188	22.8214
gggggcgccggggcccggggc	chr18:8609556-8609822(+)$1	266	90	111	20.9464
ggggagggcgcggcgaggggc	chr13:41239156-41239436(-)$1	280	156	177	26.6607
GGGUCGGGUGCGGGGGCGAGC	chr2:68479067-68479301(-)$1	234	97	118	19.6071
GGGGAGGGGGCGCCGCCCGGG	chr19:4066380-4066624(-)$1	244	130	151	19.9642
GGGGCUGGGGAGAGGAGGGGG	chr17:77812010-77812237(-)$1	227	168	189	22.5535

#otherMatches

#Struct PSSM
dd[ffffff$$$$$eeeee[h	chr6:11044168-11044416(-)$1	248	92	113	23.4464
hhhhhh]eeeee]ddddFFFF	chr6:16760790-16761049(-)$1	259	230	251	19.6071
::::FFFFFFMMMMDDDD{II	chr17:75346723-75346990(+)$1	267	104	125	22.7321
ffffff]dddd]ccc22bba2	chr10:80829176-80829416(+)$1	240	193	214	19.6964
eeffffff]bb]ddddeeeee	chr7:43945677-43946029(-)$1	352	57	78	25.4107
FFFFF{DDDDKKCCC{GGGGG	chrX:128656764-128657091(-)$1	327	113	134	29.6964
qqqa]ccc]bb:ggggggg[c	chr1:22379330-22379638(+)$1	308	90	111	21.9285
HHHH{BBKKDDDD{BB{CCC{	chrX:20284118-20284386(-)$1	268	7	28	22.1071
::a[cccooooooccc]aIII	chr2:47402947-47403221(-)$1	274	243	264	20.9464
eee!!dddd[==========d	chr11:486193-486494(+)$1	301	95	116	27.0178
ggggggg:iiiiiiiiioooo	chr10:124134510-124134802(+)$1	292	58	79	20.5892
ccc22ffffff:eeeee[ccc	chr22:32340759-32341008(+)$1	249	149	170	20.2321
HHHHHgggggggccclllccc	chr15:93426447-93426787(+)$1	340	46	67	19.6071
ggggggg:eeeee[bb[ccc[	chr7:105028274-105028536(-)$1	262	110	131	19.8749
BIIIIIIIIIeeeee[hhhhh	chr17:79917503-79917747(-)$1	244	116	137	20.3214
#a[ccc"""dddd[dddd[bb	chr8:61592436-61592682(+)$1	246	94	115	22.3749
{BB{BBKKA{FFFFFFKKBB{	chr1:167190580-167190834(+)$1	254	69	90	23.4464
bbGGGGGGGBBCCC{BB{DDD	chr2:74212364-74212613(+)$1	249	90	111	25.8571
:::::ffffffssssssssss	chr17:36760916-36761165(-)$1	249	0	21	21.1249
ddd]cccccc]eeeeeBBKKC	chr9:140513757-140513979(+)$1	222	106	127	21.0357
leeeee]eeeee:ggggggg[	chr13:33160835-33161105(+)$1	270	74	95	22.8214
444dddd22ffffff]fffff	chr20:47804182-47804414(-)$1	232	78	99	25.4999
==[hhhhhhhh!!eeeeebb"	chr20:60813656-60813941(+)$1	285	74	95	27.9999
lllccc]dddd]ccc22a]cc	chr9:138371785-138372061(+)$1	276	47	68	22.1071
======:eeeee"""gggggg	chr2:231902513-231902748(+)$1	235	170	191	26.7499
nna]ddddEEEEE}BBBBEEE	chr6:158244659-158244908(+)$1	249	39	60	22.4642
iiiiiiillliiiiiiiii::	chr2:20549951-20550293(-)$1	342	65	86	19.5178
dddd]dddd]ccc333fffff	chr20:40246776-40247044(-)$1	268	216	237	21.6607
iiiiiiiiiEEEEEGGGGGGG	chr1:22379675-22379920(+)$1	245	85	106	26.7500
88888dddd]eeeeehhhhhh	chr6:37787966-37788232(+)$1	266	100	121	24.4285
ee[cccccc####eeeeelll	chr2:47402806-47403076(-)$1	270	108	129	24.2499
hhhhhh"""dddd[ddddlll	chr16:692267-692529(+)$1	262	114	135	21.5714
JJJJJJ{EEEEE::ccc!!ii	chr8:145687815-145688067(-)$1	252	103	124	21.5714
CCC{FFFFFFddddddddlll	chr7:73015097-73015353(-)$1	256	98	119	21.3035
LLFFFFFF::DDDD{FFFFFF	chr17:80019760-80020013(-)$1	253	22	43	23.8928
============ccc"""fff	chr3:176914702-176914974(-)$1	272	89	110	23.9821
ddiiiiiiiiieeeee####c	chr16:24551130-24551370(+)$1	240	116	137	23.8928
c[aooooooa]ccc]dddd]d	chr8:61591897-61592160(+)$1	263	26	47	23.1785
gg[a[===========[bb[b	chr17:79790807-79791110(-)$1	303	23	44	35.0535
gggggg[==========ffff	chr17:73900659-73900953(-)$1	294	82	103	25.7678
qdddd]eeeee]eeeeeJJJJ	chr8:131455386-131455654(-)$1	268	42	63	25.5000
fffccc]==========22dd	chr21:16436710-16436947(-)$1	237	72	93	24.6964
lllbb]a]eeeee22ccc]a]	chr17:36955687-36955938(-)$1	251	34	55	22.8214
a]a]ccceeeeehhhhhhhho	chr8:103424223-103424465(-)$1	242	84	105	22.6428
===========[bbxxxxxxx	chr19:42757962-42758194(-)$1	232	111	132	21.7499
eemmmmeeeeehhhhhhhhee	chr1:90287242-90287481(+)$1	239	111	132	21.5714
ggggggccc22bb333eeeee	chr7:101459365-101459627(+)$1	262	111	132	24.2499
iiiiiiiii]a]a]hhhhhhh	chr3:47204917-47205177(-)$1	260	60	81	18.1785
####dddd[ffffff[fffff	chr20:30946567-30946831(+)$1	264	97	118	27.1071
FFYYGGGGGGGDDDD}HHHHH	chr2:178129074-178129346(-)$1	272	240	261	26.6607
fff4444ffffff:ggggggg	chr4:38666222-38666484(+)$1	262	167	188	22.8214
2ffffffddddffffff:a[c	chr18:8609556-8609822(+)$1	266	90	111	20.9464
iiiiiiiii]bb]a:FFFFFF	chr13:41239156-41239436(-)$1	280	156	177	26.6607
GGGGGDDDDggggggg!!ddd	chr2:68479067-68479301(-)$1	234	97	118	19.6071
eeee22hhhhhhhhggggggg	chr19:4066380-4066624(-)$1	244	130	151	19.9642
d]dddd]dddd:::CCCYYEE	chr17:77812010-77812237(-)$1	227	168	189	22.5535

#DB
((.((((((.....(((((.(	chr6:11044168-11044416(-)$1	1	92	113	23.4464
)))))).))))).))))))))	chr6:16760790-16761049(-)$1	1	230	251	19.6071
....((((((....((((.((	chr17:75346723-75346990(+)$1	1	104	125	22.7321
)))))).)))).)))..))).	chr10:80829176-80829416(+)$1	1	193	214	19.6964
)))))))).)).))))(((((	chr7:43945677-43946029(-)$1	1	57	78	25.4107
(((((.((((..(((.(((((	chrX:128656764-128657091(-)$1	1	113	134	29.6964
...).))).)).(((((((.(	chr1:22379330-22379638(+)$1	1	90	111	21.9285
((((.((..((((.((.(((.	chrX:20284118-20284386(-)$1	1	7	28	22.1071
..(.(((......))).))))	chr2:47402947-47403221(-)$1	1	243	264	20.9464
(((..((((.(((((((((((	chr11:486193-486494(+)$1	1	95	116	27.0178
))))))).(((((((((....	chr10:124134510-124134802(+)$1	1	58	79	20.5892
)))..)))))).(((((.(((	chr22:32340759-32341008(+)$1	1	149	170	20.2321
(((((((((((((((...)))	chr15:93426447-93426787(+)$1	1	46	67	19.6071
))))))).(((((.((.(((.	chr7:105028274-105028536(-)$1	1	110	131	19.8749
))))))))))(((((.(((((	chr17:79917503-79917747(-)$1	1	116	137	20.3214
.(.(((...((((.((((.((	chr8:61592436-61592682(+)$1	1	94	115	22.3749
.((.((..(.((((((..((.	chr1:167190580-167190834(+)$1	1	69	90	23.4464
))((((((((((((.((.(((	chr2:74212364-74212613(+)$1	1	90	111	25.8571
.....((((((..........	chr17:36760916-36761165(-)$1	1	0	21	21.1249
))).)))))).)))))((..(	chr9:140513757-140513979(+)$1	1	106	127	21.0357
.))))).))))).(((((((.	chr13:33160835-33161105(+)$1	1	74	95	22.8214
...))))..)))))).)))))	chr20:47804182-47804414(-)$1	1	78	99	25.4999
((.((((((((..(((((((.	chr20:60813656-60813941(+)$1	1	74	95	27.9999
...))).)))).)))..).))	chr9:138371785-138372061(+)$1	1	47	68	22.1071
)))))).(((((...((((((	chr2:231902513-231902748(+)$1	1	170	191	26.7499
..).))))))))).))))(((	chr6:158244659-158244908(+)$1	1	39	60	22.4642
(((((((...)))))))))..	chr2:20549951-20550293(-)$1	1	65	86	19.5178
)))).)))).)))...)))))	chr20:40246776-40247044(-)$1	1	216	237	21.6607
)))))))))((((((((((((	chr1:22379675-22379920(+)$1	1	85	106	26.7500
.....)))).)))))((((((	chr6:37787966-37788232(+)$1	1	100	121	24.4285
((.((((((....(((((...	chr2:47402806-47403076(-)$1	1	108	129	24.2499
((((((...((((.((((...	chr16:692267-692529(+)$1	1	114	135	21.5714
((((((.(((((..(((..((	chr8:145687815-145688067(-)$1	1	103	124	21.5714
(((.((((((((((((((...	chr7:73015097-73015353(-)$1	1	98	119	21.3035
..((((((..((((.((((((	chr17:80019760-80020013(-)$1	1	22	43	23.8928
))))))))))))(((...(((	chr3:176914702-176914974(-)$1	1	89	110	23.9821
((((((((((((((((....(	chr16:24551130-24551370(+)$1	1	116	137	23.8928
(.(......).))).)))).)	chr8:61591897-61592160(+)$1	1	26	47	23.1785
((.(.(((((((((((.((.(	chr17:79790807-79791110(-)$1	1	23	44	35.0535
((((((.((((((((((((((	chr17:73900659-73900953(-)$1	1	82	103	25.7678
.)))).))))).)))))((((	chr8:131455386-131455654(-)$1	1	42	63	25.5000
)))))).))))))))))..))	chr21:16436710-16436947(-)$1	1	72	93	24.6964
...)).).)))))..))).).	chr17:36955687-36955938(-)$1	1	34	55	22.8214
).).))))))))((((((((.	chr8:103424223-103424465(-)$1	1	84	105	22.6428
(((((((((((.((.......	chr19:42757962-42758194(-)$1	1	111	132	21.7499
((....)))))((((((((((	chr1:90287242-90287481(+)$1	1	111	132	21.5714
)))))))))..))...)))))	chr7:101459365-101459627(+)$1	1	111	132	24.2499
))))))))).).).)))))))	chr3:47204917-47205177(-)$1	1	60	81	18.1785
....((((.((((((.(((((	chr20:30946567-30946831(+)$1	1	97	118	27.1071
))..))))))))))).)))))	chr2:178129074-178129346(-)$1	1	240	261	26.6607
)))....)))))).(((((((	chr4:38666222-38666484(+)$1	1	167	188	22.8214
.)))))))))))))))).(.(	chr18:8609556-8609822(+)$1	1	90	111	20.9464
))))))))).)).).))))))	chr13:41239156-41239436(-)$1	1	156	177	26.6607
((((((((((((((((..(((	chr2:68479067-68479301(-)$1	1	97	118	19.6071
))))..))))))))(((((((	chr19:4066380-4066624(-)$1	1	130	151	19.9642
).)))).))))...)))..))	chr17:77812010-77812237(-)$1	1	168	189	22.5535

#PSSM
G : 0.49	g : 0.41	C : 0.03	c : 0.01	a : 0.01	U : 0.01	
G : 0.49	g : 0.39	c : 0.05	u : 0.01	A : 0.01	C : 0.01	
G : 0.37	g : 0.30	c : 0.14	C : 0.10	A : 0.03	U : 0.01	a : 0.01	
G : 0.39	g : 0.37	c : 0.07	A : 0.07	U : 0.03	C : 0.03	u : 0.01	
g : 0.23	G : 0.19	C : 0.17	c : 0.14	A : 0.10	u : 0.05	a : 0.05	U : 0.03	
c : 0.32	C : 0.23	g : 0.19	G : 0.19	U : 0.03	A : 0.01	
g : 0.44	G : 0.33	C : 0.08	c : 0.07	A : 0.03	a : 0.01	
g : 0.44	G : 0.39	C : 0.07	a : 0.03	c : 0.03	u : 0.01	
g : 0.42	G : 0.39	c : 0.08	U : 0.03	u : 0.01	A : 0.01	C : 0.01	
g : 0.41	G : 0.39	U : 0.07	c : 0.05	u : 0.05	a : 0.01	
c : 0.39	C : 0.28	G : 0.10	g : 0.10	A : 0.05	u : 0.01	a : 0.01	U : 0.01	
g : 0.39	G : 0.24	U : 0.10	c : 0.08	C : 0.05	A : 0.05	u : 0.05	
g : 0.48	G : 0.42	c : 0.03	a : 0.01	C : 0.01	A : 0.01	
g : 0.35	G : 0.32	c : 0.12	C : 0.10	a : 0.05	A : 0.01	U : 0.01	
g : 0.44	G : 0.41	c : 0.08	C : 0.03	A : 0.01	
c : 0.32	C : 0.17	G : 0.17	g : 0.14	a : 0.07	A : 0.07	U : 0.03	
g : 0.49	G : 0.32	C : 0.10	A : 0.03	a : 0.01	c : 0.01	
g : 0.44	G : 0.30	C : 0.10	c : 0.08	U : 0.05	
g : 0.44	G : 0.37	A : 0.07	c : 0.05	a : 0.01	u : 0.01	C : 0.01	
g : 0.48	G : 0.42	C : 0.03	U : 0.03	c : 0.01	
C : 0.37	c : 0.24	g : 0.19	G : 0.12	A : 0.01	a : 0.01	u : 0.01	

#score	1299.2499999999995
#seq	56
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_UTR_m3_run2.nuc.txt

#NT
UGCUGCCU	chr16:70192498-70192730(+)$1	232	72	80	14.9183
ucuugccu	chr11:62566392-62566665(-)$1	273	84	92	15.2244
uccugucu	chr16:58054423-58054813(+)$1	390	23	31	16.5510
UCUUGCCU	chr3:187897874-187898152(+)$1	278	124	132	15.2244
CCCUGCCU	chr2:85548214-85548444(-)$1	230	175	183	15.1224
uccugucu	chr19:54377776-54378028(+)$1	252	81	89	16.5510
UCUUGCCU	chr12:66250228-66250485(+)$1	257	37	45	15.2244
UCCUGCCU	chr6:7282393-7282718(-)$1	325	195	203	19.3061
uccugacu	chr12:66250141-66250412(+)$1	271	79	87	15.8367
uucugccu	chr4:1386589-1386824(+)$1	235	2	10	14.9183
uccuuccu	chr2:75884294-75884602(+)$1	308	188	196	16.0408
UCCUGACU	chr19:45912459-45912728(-)$1	269	96	104	15.8367
UCCUGCUU	chr12:53909697-53909999(-)$1	302	102	110	15.1224
UCCUGCCU	chr6:52367689-52367951(-)$1	262	40	48	19.3061
UCCUGCCA	chr2:105964366-105964692(+)$1	326	68	76	14.7142
uccucccu	chr5:59423279-59423542(-)$1	263	116	124	15.9387
uccuaccu	chr2:71213848-71214093(-)$1	245	35	43	15.8367
UCCUGCCU	chr2:85547142-85547408(-)$1	266	103	111	19.3061
uccuuccu	chr7:73108551-73108869(+)$1	318	166	174	16.0408
CCCUGCCU	chr2:85548130-85548414(-)$1	284	145	153	15.1224
UCGUGCCU	chr16:70191101-70191358(+)$1	257	150	158	14.9183
uccugucu	chr2:71213911-71214221(-)$1	310	72	80	16.5510
UCCUCUCU	chr12:49330033-49330310(-)$1	277	87	95	13.1836
CCCUGCCU	chr2:85548099-85548330(-)$1	231	61	69	15.1224
uccugucu	chr19:54377828-54378082(+)$1	254	29	37	16.5510
gccugccu	chr2:176791610-176791897(-)$1	287	231	239	15.0204
UCCUUUCU	chr12:49330278-49330599(-)$1	321	297	305	13.2857
UCCUGCUU	chr7:100164437-100164687(+)$1	250	193	201	15.1224
ucuugccu	chr9:71397809-71398106(+)$1	297	134	142	15.2244
UCCUGGCU	chr2:85546796-85547045(-)$1	249	220	228	15.8367
uccuggcu	chr20:34820053-34820322(+)$1	269	202	210	15.8367
uucugccu	chr4:1386520-1386789(+)$1	269	71	79	14.9183
UCCUUUCU	chr2:71214961-71215314(-)$1	353	98	106	13.2857
UCCUCCCU	chr19:50432035-50432302(-)$1	267	13	21	15.9387
uccuaccu	chr4:1386402-1386618(+)$1	216	100	108	15.8367
UCCUUCCU	chr20:36146708-36146972(-)$1	264	43	51	16.0408
ucccgccu	chr22:20067965-20068231(+)$1	266	16	24	14.5102
uccuaccu	chr12:66250522-66250790(+)$1	268	165	173	15.8367
uccucucu	chr5:92919062-92919323(+)$1	261	8	16	13.1836
UCCUGCCA	chr3:187897302-187897548(+)$1	246	65	73	14.7142
uccugccu	chr19:56188028-56188300(+)$1	272	142	150	19.3061
UCCUGCCU	chr6:7282275-7282593(-)$1	318	70	78	19.3061
GCCUGCCU	chr2:240898943-240899332(-)$1	389	46	54	15.0204
UCCUGCUU	chr7:143003007-143003252(+)$1	245	143	151	15.1224
UCCUGCUU	chr11:8634535-8634840(-)$1	305	154	162	15.1224
UCCUGCCU	chr20:36146435-36146704(-)$1	269	122	130	19.3061
uccugccu	chr9:116169969-116170304(-)$1	335	158	166	19.3061
UCCUGUCU	chrX:48328258-48328509(-)$1	251	169	177	16.5510

#otherMatches

#Struct PSSM
FFFFIIII	chr6:155585307-155585579(-)$1	272	129	137	14.9183
]ccc====	chr16:70192498-70192730(+)$1	232	72	80	14.9183
qqqqbb::	chr11:62566392-62566665(-)$1	273	84	92	15.2244
::::::::	chr16:58054423-58054813(+)$1	390	23	31	16.5510
444=====	chr3:187897874-187898152(+)$1	278	124	132	15.2244
777ccc22	chr2:85548214-85548444(-)$1	230	175	183	15.1224
999999cc	chr19:54377776-54378028(+)$1	252	81	89	16.5510
GGGGGGG{	chr12:66250228-66250485(+)$1	257	37	45	15.2244
______DD	chr6:7282393-7282718(-)$1	325	195	203	19.3061
::::dddd	chr12:66250141-66250412(+)$1	271	79	87	15.8367
ggggg[hh	chr4:1386589-1386824(+)$1	235	2	10	14.9183
========	chr2:75884294-75884602(+)$1	308	188	196	16.0408
5555ccc2	chr19:45912459-45912728(-)$1	269	96	104	15.8367
mmmmbb::	chr12:53909697-53909999(-)$1	302	102	110	15.1224
JJJCCC:b	chr6:52367689-52367951(-)$1	262	40	48	19.3061
bb]ggggg	chr2:105964366-105964692(+)$1	326	68	76	14.7142
0000000c	chr5:59423279-59423542(-)$1	263	116	124	15.9387
[ccc''''	chr2:71213848-71214093(-)$1	245	35	43	15.8367
mmmma22d	chr2:85547142-85547408(-)$1	266	103	111	19.3061
rbb55555	chr7:73108551-73108869(+)$1	318	166	174	16.0408
777ccc22	chr2:85548130-85548414(-)$1	284	145	153	15.1224
JJJJJJJJ	chr16:70191101-70191358(+)$1	257	150	158	14.9183
::::dddd	chr2:71213911-71214221(-)$1	310	72	80	16.5510
eeeee"""	chr12:49330033-49330310(-)$1	277	87	95	13.1836
777ccc22	chr2:85548099-85548330(-)$1	231	61	69	15.1224
CCC{DDDD	chr19:54377828-54378082(+)$1	254	29	37	16.5510
bb!!cccm	chr2:176791610-176791897(-)$1	287	231	239	15.0204
GGGGGYYE	chr12:49330278-49330599(-)$1	321	297	305	13.2857
fffff:::	chr7:100164437-100164687(+)$1	250	193	201	15.1224
mmmmbb]d	chr9:71397809-71398106(+)$1	297	134	142	15.2244
||||CCCY	chr2:85546796-85547045(-)$1	249	220	228	15.8367
oooa]fff	chr20:34820053-34820322(+)$1	269	202	210	15.8367
ggggg[hh	chr4:1386520-1386789(+)$1	269	71	79	14.9183
HHHHHHHH	chr2:71214961-71215314(-)$1	353	98	106	13.2857
ooodddd:	chr19:50432035-50432302(-)$1	267	13	21	15.9387
fff$$$$$	chr4:1386402-1386618(+)$1	216	100	108	15.8367
DDD:::::	chr20:36146708-36146972(-)$1	264	43	51	16.0408
deeeee""	chr22:20067965-20068231(+)$1	266	16	24	14.5102
^^^^^iii	chr12:66250522-66250790(+)$1	268	165	173	15.8367
DDD:::::	chr5:92919062-92919323(+)$1	261	8	16	13.1836
CC:cccnn	chr3:187897302-187897548(+)$1	246	65	73	14.7142
edddd]a:	chr19:56188028-56188300(+)$1	272	142	150	19.3061
ooooccc]	chr6:7282275-7282593(-)$1	318	70	78	19.3061
ee::::::	chr2:240898943-240899332(-)$1	389	46	54	15.0204
fffffnnn	chr7:143003007-143003252(+)$1	245	143	151	15.1224
mmmmbb55	chr11:8634535-8634840(-)$1	305	154	162	15.1224
ffff%%%%	chr20:36146435-36146704(-)$1	269	122	130	19.3061
::::CCC@	chr9:116169969-116170304(-)$1	335	158	166	19.3061
4444bb44	chrX:48328258-48328509(-)$1	251	169	177	16.5510

#DB
((((((((	chr6:155585307-155585579(-)$1	1	129	137	14.9183
.)))))))	chr16:70192498-70192730(+)$1	1	72	80	14.9183
....))..	chr11:62566392-62566665(-)$1	1	84	92	15.2244
........	chr16:58054423-58054813(+)$1	1	23	31	16.5510
...)))))	chr3:187897874-187898152(+)$1	1	124	132	15.2244
...)))..	chr2:85548214-85548444(-)$1	1	175	183	15.1224
......))	chr19:54377776-54378028(+)$1	1	81	89	16.5510
(((((((.	chr12:66250228-66250485(+)$1	1	37	45	15.2244
......))	chr6:7282393-7282718(-)$1	1	195	203	19.3061
....((((	chr12:66250141-66250412(+)$1	1	79	87	15.8367
(((((.((	chr4:1386589-1386824(+)$1	1	2	10	14.9183
((((((((	chr2:75884294-75884602(+)$1	1	188	196	16.0408
....))).	chr19:45912459-45912728(-)$1	1	96	104	15.8367
....))..	chr12:53909697-53909999(-)$1	1	102	110	15.1224
((((((.(	chr6:52367689-52367951(-)$1	1	40	48	19.3061
)).)))))	chr2:105964366-105964692(+)$1	1	68	76	14.7142
.......)	chr5:59423279-59423542(-)$1	1	116	124	15.9387
.(((....	chr2:71213848-71214093(-)$1	1	35	43	15.8367
....)..)	chr2:85547142-85547408(-)$1	1	103	111	19.3061
.)).....	chr7:73108551-73108869(+)$1	1	166	174	16.0408
...)))..	chr2:85548130-85548414(-)$1	1	145	153	15.1224
))))))))	chr16:70191101-70191358(+)$1	1	150	158	14.9183
....((((	chr2:71213911-71214221(-)$1	1	72	80	16.5510
(((((...	chr12:49330033-49330310(-)$1	1	87	95	13.1836
...)))..	chr2:85548099-85548330(-)$1	1	61	69	15.1224
(((.((((	chr19:54377828-54378082(+)$1	1	29	37	16.5510
((..(((.	chr2:176791610-176791897(-)$1	1	231	239	15.0204
)))))..)	chr12:49330278-49330599(-)$1	1	297	305	13.2857
)))))...	chr7:100164437-100164687(+)$1	1	193	201	15.1224
....)).)	chr9:71397809-71398106(+)$1	1	134	142	15.2244
....))).	chr2:85546796-85547045(-)$1	1	220	228	15.8367
...).)))	chr20:34820053-34820322(+)$1	1	202	210	15.8367
(((((.((	chr4:1386520-1386789(+)$1	1	71	79	14.9183
((((((((	chr2:71214961-71215314(-)$1	1	98	106	13.2857
...)))).	chr19:50432035-50432302(-)$1	1	13	21	15.9387
(((.....	chr4:1386402-1386618(+)$1	1	100	108	15.8367
(((.....	chr20:36146708-36146972(-)$1	1	43	51	16.0408
((((((..	chr22:20067965-20068231(+)$1	1	16	24	14.5102
.....)))	chr12:66250522-66250790(+)$1	1	165	173	15.8367
(((.....	chr5:92919062-92919323(+)$1	1	8	16	13.1836
((.(((..	chr3:187897302-187897548(+)$1	1	65	73	14.7142
))))).).	chr19:56188028-56188300(+)$1	1	142	150	19.3061
....))).	chr6:7282275-7282593(-)$1	1	70	78	19.3061
))......	chr2:240898943-240899332(-)$1	1	46	54	15.0204
(((((...	chr7:143003007-143003252(+)$1	1	143	151	15.1224
....))..	chr11:8634535-8634840(-)$1	1	154	162	15.1224
((((....	chr20:36146435-36146704(-)$1	1	122	130	19.3061
....))).	chr9:116169969-116170304(-)$1	1	158	166	19.3061
....))..	chrX:48328258-48328509(-)$1	1	169	177	16.5510

#PSSM
U : 0.48	u : 0.40	C : 0.06	g : 0.02	G : 0.02	
C : 0.53	c : 0.38	G : 0.04	u : 0.04	
C : 0.51	c : 0.38	u : 0.04	U : 0.04	G : 0.02	
U : 0.57	u : 0.40	c : 0.02	
G : 0.46	g : 0.28	a : 0.06	U : 0.06	u : 0.04	c : 0.04	C : 0.04	
C : 0.44	c : 0.28	u : 0.10	U : 0.08	a : 0.02	A : 0.02	G : 0.02	g : 0.02	
C : 0.48	c : 0.42	U : 0.08	
U : 0.53	u : 0.42	A : 0.04	

#score	777.0204081632659
#seq	49
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_UTR_m2_run1.nuc.txt

#NT
cccccagccc	chr19:14203558-14203791(-)$1	233	121	131	21.6666
cccccacccc	chr1:2240876-2241178(+)$1	302	269	279	24.4791
ccccuucccc	chr19:17452804-17453112(+)$1	308	96	106	17.6041
CCCCGACCCC	chr2:97541728-97541964(-)$1	236	95	105	20.6250
CCCCCACCCC	chr13:114538782-114539065(-)$1	283	181	191	24.4791
CGCCCACCCC	chr2:97541587-97541818(-)$1	231	36	46	20.2083
UCCCCACCCC	chr19:51891553-51891862(-)$1	309	250	260	19.6875
CCCCCAGCCC	chr11:66011719-66012013(+)$1	294	231	241	21.6666
cccccagccc	chrX:133930201-133930461(-)$1	260	69	79	21.6666
cucccucccc	chrX:122735164-122735392(-)$1	228	129	139	17.7083
CCCCGACCCC	chr2:97541618-97541834(-)$1	216	8	18	20.6250
CCCCCACCCC	chr12:32260082-32260393(+)$1	311	141	151	24.4791
cccccacccc	chr17:28256911-28257216(-)$1	305	97	107	24.4791
cccucccccc	chr19:35759900-35760167(+)$1	267	60	70	17.2916
CCCACACCCC	chr1:155260187-155260437(-)$1	250	146	156	20.5208
CUCCCUCCCC	chr20:334391-334706(+)$1	315	34	44	17.7083
CCCACACCCC	chr1:155260134-155260353(-)$1	219	62	72	20.5208
ccccgacccc	chr17:80708696-80708943(+)$1	247	164	174	20.6250
CCCCCACCCC	chr1:160328138-160328463(+)$1	325	283	293	24.4791
cccccucccc	chr3:196083154-196083412(-)$1	258	82	92	21.8749
cccucucccc	chr12:57824484-57824806(-)$1	322	91	101	18.3333
cccucauccc	chr13:113537332-113537660(+)$1	328	7	17	17.7083
cccccucccc	chr17:29422036-29422320(+)$1	284	40	50	21.8749
CCCCCACCCU	chr17:47132697-47132938(+)$1	241	15	25	19.7916
cccccuuccc	chr20:251510-251775(-)$1	265	96	106	18.6458
ccccgacccc	chr17:80708898-80709167(+)$1	269	117	127	20.6250
cucccacccc	chrX:53263350-53263626(-)$1	276	3	13	20.3124
CCCCCACCCA	chr19:50129447-50129768(+)$1	321	38	48	19.7916
cccccacccc	chrX:109417584-109417834(+)$1	250	3	13	24.4791
CCACCAGCCC	chr19:41829443-41829714(+)$1	271	82	92	16.9791
cccccagccc	chrX:133930316-133930576(-)$1	260	184	194	21.6666
cccucacucc	chrX:56592317-56592543(+)$1	226	32	42	16.4583
cccccacccc	chr13:42894552-42894816(+)$1	264	127	137	24.4791
ccuccacccc	chr12:53845903-53846181(+)$1	278	117	127	19.7916
cccccucccc	chr2:200322906-200323175(-)$1	269	211	221	21.8749
CCCCCACCAC	chr20:3848730-3849024(+)$1	294	108	118	19.6874
cccccacccc	chr5:175956982-175957200(-)$1	218	65	75	24.4791
CCCCCAGGCC	chr3:47454302-47454586(+)$1	284	37	47	17.0833
cccucucccc	chr20:62153249-62153500(+)$1	251	46	56	18.3333
cccccucccc	chr17:7154844-7155064(-)$1	220	54	64	21.8749
CCCCGACCCC	chr2:97541634-97541866(-)$1	232	40	50	20.6250
cccccuuccc	chr20:251441-251710(-)$1	269	31	41	18.6458
CCCCCAACCC	chrX:48549549-48549856(+)$1	307	98	108	20.9375
cccccagccc	chrX:133930376-133930615(-)$1	239	223	233	21.6666
cccccauccc	chr2:172016948-172017273(-)$1	325	191	201	21.2500
cccccagccc	chrX:133930146-133930401(-)$1	255	9	19	21.6666
CGCCCACCCC	chr19:4047002-4047304(-)$1	302	188	198	20.2083

#otherMatches

#Struct PSSM
:::::::::d	chr20:33298267-33298551(+)$1	284	35	45	16.4583
dd%%%%%%dd	chr19:14203558-14203791(-)$1	233	121	131	21.6666
44eeeee>>>	chr1:2240876-2241178(+)$1	302	269	279	24.4791
::::::::::	chr19:17452804-17453112(+)$1	308	96	106	17.6041
++++++++++	chr2:97541728-97541964(-)$1	236	95	105	20.6250
fffffEEEEE	chr13:114538782-114539065(-)$1	283	181	191	24.4791
teeeee]ddd	chr2:97541587-97541818(-)$1	231	36	46	20.2083
::::::::::	chr19:51891553-51891862(-)$1	309	250	260	19.6875
ppppccc333	chr11:66011719-66012013(+)$1	294	231	241	21.6666
::::::bbmm	chrX:133930201-133930461(-)$1	260	69	79	21.6666
^^^^^^^^^^	chrX:122735164-122735392(-)$1	228	129	139	17.7083
::::DDDD::	chr2:97541618-97541834(-)$1	216	8	18	20.6250
e&&&&&&&ee	chr12:32260082-32260393(+)$1	311	141	151	24.4791
::::::::DD	chr17:28256911-28257216(-)$1	305	97	107	24.4791
^^^^^bb444	chr19:35759900-35760167(+)$1	267	60	70	17.2916
FFYYDDDD::	chr1:155260187-155260437(-)$1	250	146	156	20.5208
eeeeddddll	chr20:334391-334706(+)$1	315	34	44	17.7083
::::::::::	chr1:155260134-155260353(-)$1	219	62	72	20.5208
::::cccttt	chr17:80708696-80708943(+)$1	247	164	174	20.6250
^^^^^^^^^^	chr1:160328138-160328463(+)$1	325	283	293	24.4791
::::::::bb	chr3:196083154-196083412(-)$1	258	82	92	21.8749
^^^^^^^^^^	chr12:57824484-57824806(-)$1	322	91	101	18.3333
::::::::::	chr13:113537332-113537660(+)$1	328	7	17	17.7083
::::::::::	chr17:29422036-29422320(+)$1	284	40	50	21.8749
GGGGGGGBBO	chr17:47132697-47132938(+)$1	241	15	25	19.7916
::::::::::	chr20:251510-251775(-)$1	265	96	106	18.6458
ttttccc666	chr17:80708898-80709167(+)$1	269	117	127	20.6250
::::::::::	chrX:53263350-53263626(-)$1	276	3	13	20.3124
lllccc22cc	chr19:50129447-50129768(+)$1	321	38	48	19.7916
GGGGGGGbb!	chrX:109417584-109417834(+)$1	250	3	13	24.4791
^^^^^bbfff	chr19:41829443-41829714(+)$1	271	82	92	16.9791
::::::::::	chrX:133930316-133930576(-)$1	260	184	194	21.6666
^^^^^eeeee	chrX:56592317-56592543(+)$1	226	32	42	16.4583
ccc[ccc###	chr13:42894552-42894816(+)$1	264	127	137	24.4791
^^^^^^^^^^	chr12:53845903-53846181(+)$1	278	117	127	19.7916
::::::::::	chr2:200322906-200323175(-)$1	269	211	221	21.8749
::::::::::	chr20:3848730-3849024(+)$1	294	108	118	19.6874
::::::::::	chr5:175956982-175957200(-)$1	218	65	75	24.4791
EEEEDDDDPP	chr3:47454302-47454586(+)$1	284	37	47	17.0833
c:::::::::	chr20:62153249-62153500(+)$1	251	46	56	18.3333
^^^^^^^^^^	chr17:7154844-7155064(-)$1	220	54	64	21.8749
b:::::::::	chr2:97541634-97541866(-)$1	232	40	50	20.6250
::::::::::	chr20:251441-251710(-)$1	269	31	41	18.6458
f+++++++++	chrX:48549549-48549856(+)$1	307	98	108	20.9375
::::::::::	chrX:133930376-133930615(-)$1	239	223	233	21.6666
bb::bboooo	chr2:172016948-172017273(-)$1	325	191	201	21.2500
:::EEEEE{B	chrX:133930146-133930401(-)$1	255	9	19	21.6666
eee::::bb#	chr19:4047002-4047304(-)$1	302	188	198	20.2083

#DB
.........(	chr20:33298267-33298551(+)$1	1	35	45	16.4583
((......((	chr19:14203558-14203791(-)$1	1	121	131	21.6666
..)))))...	chr1:2240876-2241178(+)$1	1	269	279	24.4791
..........	chr19:17452804-17453112(+)$1	1	96	106	17.6041
..........	chr2:97541728-97541964(-)$1	1	95	105	20.6250
))))))))))	chr13:114538782-114539065(-)$1	1	181	191	24.4791
.))))).)))	chr2:97541587-97541818(-)$1	1	36	46	20.2083
..........	chr19:51891553-51891862(-)$1	1	250	260	19.6875
....)))...	chr11:66011719-66012013(+)$1	1	231	241	21.6666
......((..	chrX:133930201-133930461(-)$1	1	69	79	21.6666
..........	chrX:122735164-122735392(-)$1	1	129	139	17.7083
....((((..	chr2:97541618-97541834(-)$1	1	8	18	20.6250
(.......((	chr12:32260082-32260393(+)$1	1	141	151	24.4791
........((	chr17:28256911-28257216(-)$1	1	97	107	24.4791
.....))...	chr19:35759900-35760167(+)$1	1	60	70	17.2916
))..))))..	chr1:155260187-155260437(-)$1	1	146	156	20.5208
((((((((..	chr20:334391-334706(+)$1	1	34	44	17.7083
..........	chr1:155260134-155260353(-)$1	1	62	72	20.5208
....(((...	chr17:80708696-80708943(+)$1	1	164	174	20.6250
..........	chr1:160328138-160328463(+)$1	1	283	293	24.4791
........((	chr3:196083154-196083412(-)$1	1	82	92	21.8749
..........	chr12:57824484-57824806(-)$1	1	91	101	18.3333
..........	chr13:113537332-113537660(+)$1	1	7	17	17.7083
..........	chr17:29422036-29422320(+)$1	1	40	50	21.8749
(((((((((.	chr17:47132697-47132938(+)$1	1	15	25	19.7916
..........	chr20:251510-251775(-)$1	1	96	106	18.6458
....)))...	chr17:80708898-80709167(+)$1	1	117	127	20.6250
..........	chrX:53263350-53263626(-)$1	1	3	13	20.3124
...)))..))	chr19:50129447-50129768(+)$1	1	38	48	19.7916
(((((((((.	chrX:109417584-109417834(+)$1	1	3	13	24.4791
.....)))))	chr19:41829443-41829714(+)$1	1	82	92	16.9791
..........	chrX:133930316-133930576(-)$1	1	184	194	21.6666
.....)))))	chrX:56592317-56592543(+)$1	1	32	42	16.4583
(((.(((...	chr13:42894552-42894816(+)$1	1	127	137	24.4791
..........	chr12:53845903-53846181(+)$1	1	117	127	19.7916
..........	chr2:200322906-200323175(-)$1	1	211	221	21.8749
..........	chr20:3848730-3849024(+)$1	1	108	118	19.6874
..........	chr5:175956982-175957200(-)$1	1	65	75	24.4791
((((((((..	chr3:47454302-47454586(+)$1	1	37	47	17.0833
).........	chr20:62153249-62153500(+)$1	1	46	56	18.3333
..........	chr17:7154844-7155064(-)$1	1	54	64	21.8749
).........	chr2:97541634-97541866(-)$1	1	40	50	20.6250
..........	chr20:251441-251710(-)$1	1	31	41	18.6458
(.........	chrX:48549549-48549856(+)$1	1	98	108	20.9375
..........	chrX:133930376-133930615(-)$1	1	223	233	21.6666
))..((....	chr2:172016948-172017273(-)$1	1	191	201	21.2500
...(((((.(	chrX:133930146-133930401(-)$1	1	9	19	21.6666
)))....((.	chr19:4047002-4047304(-)$1	1	188	198	20.2083

#PSSM
c : 0.58	C : 0.39	U : 0.02	
c : 0.54	C : 0.35	G : 0.04	u : 0.04	U : 0.02	
c : 0.56	C : 0.39	A : 0.02	u : 0.02	
c : 0.47	C : 0.35	u : 0.10	A : 0.04	U : 0.02	
c : 0.52	C : 0.35	G : 0.06	g : 0.04	u : 0.02	
A : 0.39	a : 0.35	u : 0.20	c : 0.02	U : 0.02	
c : 0.39	C : 0.33	g : 0.10	u : 0.08	G : 0.06	A : 0.02	
c : 0.56	C : 0.37	U : 0.02	u : 0.02	G : 0.02	
c : 0.58	C : 0.39	A : 0.02	
c : 0.58	C : 0.37	U : 0.02	A : 0.02	

#score	988.1249999999997
#seq	48
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_transcript_m1_run1.nuc.txt

#NT
AAUGAUG	chr20:47895382-47895595(+)$1	213	103	110	18.7192
UAUGAUG	chr20:47896797-47897036(+)$1	239	67	74	16.6140
AAUGAUG	chr3:186502528-186502748(+)$1	220	62	69	18.7192
AAUGAUG	chr6:133136346-133136556(+)$1	210	104	111	18.7192
AAUGAUG	chr9:125642402-125642642(-)$1	240	61	68	18.7192
GAUGAUG	chr2:234184277-234184517(+)$1	240	99	106	17.0526
AAUGAUG	chr4:74279205-74279419(+)$1	214	42	49	18.7192
CAUGAUG	chr17:74557098-74557322(+)$1	224	99	106	16.6140
AAUGAUG	chr1:173836717-173836977(-)$1	260	136	143	18.7192
CAUGAUG	chr17:74557138-74557355(+)$1	217	59	66	16.6140
UAUGAUG	chr11:62621299-62621532(-)$1	233	96	103	16.6140
AAUGAUG	chr9:125642482-125642685(-)$1	203	104	111	18.7192
CAUGAUG	chr2:216286789-216287023(-)$1	234	139	146	16.6140
CAUGAUG	chr15:25230146-25230397(+)$1	251	128	135	16.6140
AAUGAUG	chr2:203155957-203156200(+)$1	243	104	111	18.7192
GAUGAUG	chr11:75111334-75111576(+)$1	242	112	119	17.0526
GAUGAUG	chr18:47017954-47018166(-)$1	212	71	78	17.0526
AAUGAUG	chr2:203156000-203156243(+)$1	243	61	68	18.7192
AAUGAUG	chr1:76253475-76253752(+)$1	277	102	109	18.7192
GAUGAUG	chr6:31802966-31803176(+)$1	210	76	83	17.0526
uaugaug	chr11:17096099-17096343(-)$1	244	56	63	16.6140
AAUGAUG	chr14:21865369-21865613(-)$1	244	57	64	18.7192
AAUGAUG	chr20:47895418-47895647(+)$1	229	67	74	18.7192
CAUGAUG	chr17:74557122-74557331(+)$1	209	75	82	16.6140
CAUGAUG	chr15:25227040-25227245(+)$1	205	104	111	16.6140
GAUGAUG	chr15:25339083-25339292(+)$1	209	105	112	17.0526
GAUGAUG	chr2:234184271-234184477(+)$1	206	105	112	17.0526
GAUGAUG	chr11:93466307-93466558(-)$1	251	97	104	17.0526
uaugaug	chr11:17096160-17096392(-)$1	232	105	112	16.6140
GAUGAUG	chr11:93466358-93466566(-)$1	208	105	112	17.0526
AAUGAUG	chr17:16344436-16344640(+)$1	204	104	111	18.7192
caugaug	chr17:8076800-8077005(-)$1	205	152	159	16.6140
UAUGAUG	chrX:135961293-135961532(-)$1	239	104	111	16.6140
AAUGAUG	chr5:137896695-137896900(-)$1	205	105	112	18.7192
AAUGAUG	chr6:31504078-31504296(-)$1	218	74	81	18.7192
GAUGAUG	chr6:31802976-31803186(+)$1	210	66	73	17.0526
AAUGAUG	chr15:66795085-66795302(-)$1	217	57	64	18.7192
AAUGAUG	chr9:125642442-125642682(-)$1	240	101	108	18.7192
AAUGAUG	chr11:93454846-93455133(+)$1	287	120	127	18.7192
GAUGAUG	chr19:50000890-50001119(+)$1	229	90	97	17.0526
AAUGAUG	chr4:83816913-83817180(-)$1	267	188	195	18.7192
UAUGAUG	chr17:27047482-27047701(+)$1	219	90	97	16.6140
AAUGAUG	chr6:31804777-31804981(+)$1	204	78	85	18.7192
AAUGAUG	chr13:27829114-27829339(+)$1	225	91	98	18.7192
AAUGAUG	chr5:137896645-137896858(-)$1	213	63	70	18.7192
AAUGAUG	chr3:186502495-186502727(+)$1	232	95	102	18.7192
UAUGAUG	chr17:74557630-74557859(+)$1	229	92	99	16.6140
AAUGAUG	chr17:27050600-27050807(+)$1	207	105	112	18.7192
GAUGAUG	chr11:75111376-75111580(+)$1	204	70	77	17.0526
AAUGAUG	chr2:203142783-203143008(+)$1	225	59	66	18.7192
GAUGAUG	chr18:47017935-47018151(-)$1	216	56	63	17.0526
AAUGAUG	chr17:2232320-2232605(-)$1	285	108	115	18.7192
AAUGAUG	chr9:33934197-33934468(-)$1	271	105	112	18.7192
AAUGAUG	chr1:173833902-173834104(-)$1	202	65	72	18.7192
AAUGAUG	chr6:31504049-31504261(-)$1	212	39	46	18.7192
AAUGAUG	chr11:93454578-93454891(+)$1	313	133	140	18.7192

#otherMatches

#Struct PSSM
FKKDDDD	chr1:173833904-173834141(-)$1	237	102	109	18.7192
:::bbnn	chr20:47895382-47895595(+)$1	213	103	110	18.7192
=!!cccd	chr20:47896797-47897036(+)$1	239	67	74	16.6140
eeeee%%	chr3:186502528-186502748(+)$1	220	62	69	18.7192
OOOOOOF	chr6:133136346-133136556(+)$1	210	104	111	18.7192
"""ccc#	chr9:125642402-125642642(-)$1	240	61	68	18.7192
c[eeeee	chr2:234184277-234184517(+)$1	240	99	106	17.0526
:::::::	chr4:74279205-74279419(+)$1	214	42	49	18.7192
###dddd	chr17:74557098-74557322(+)$1	224	99	106	16.6140
LLLDDDD	chr1:173836717-173836977(-)$1	260	136	143	18.7192
###dddd	chr17:74557138-74557355(+)$1	217	59	66	16.6140
f!!a[bb	chr11:62621299-62621532(-)$1	233	96	103	16.6140
"""ccc#	chr9:125642482-125642685(-)$1	203	104	111	18.7192
dddd444	chr2:216286789-216287023(-)$1	234	139	146	16.6140
ttttttt	chr15:25230146-25230397(+)$1	251	128	135	16.6140
GKKEEEE	chr2:203155957-203156200(+)$1	243	104	111	18.7192
dddqqqq	chr11:75111334-75111576(+)$1	242	112	119	17.0526
"""bb[b	chr18:47017954-47018166(-)$1	212	71	78	17.0526
GKKEEEE	chr2:203156000-203156243(+)$1	243	61	68	18.7192
ddddddd	chr1:76253475-76253752(+)$1	277	102	109	18.7192
^^^^^^^	chr6:31802966-31803176(+)$1	210	76	83	17.0526
h!!ccci	chr11:17096099-17096343(-)$1	244	56	63	16.6140
LLLCCC:	chr14:21865369-21865613(-)$1	244	57	64	18.7192
::cccnn	chr20:47895418-47895647(+)$1	229	67	74	18.7192
###dddd	chr17:74557122-74557331(+)$1	209	75	82	16.6140
f[bbooo	chr15:25227040-25227245(+)$1	205	104	111	16.6140
^^^^^^^	chr15:25339083-25339292(+)$1	209	105	112	17.0526
c[eeeee	chr2:234184271-234184477(+)$1	206	105	112	17.0526
dddnnnn	chr11:93466307-93466558(-)$1	251	97	104	17.0526
h!!ccci	chr11:17096160-17096392(-)$1	232	105	112	16.6140
dddnnnn	chr11:93466358-93466566(-)$1	208	105	112	17.0526
mmmdddd	chr17:16344436-16344640(+)$1	204	104	111	18.7192
:::::ee	chr17:8076800-8077005(-)$1	205	152	159	16.6140
ggggggg	chrX:135961293-135961532(-)$1	239	104	111	16.6140
hhhhhhh	chr5:137896695-137896900(-)$1	205	105	112	18.7192
gggggll	chr6:31504078-31504296(-)$1	218	74	81	18.7192
^^^^^^^	chr6:31802976-31803186(+)$1	210	66	73	17.0526
%%%%%%b	chr15:66795085-66795302(-)$1	217	57	64	18.7192
"""ccc#	chr9:125642442-125642682(-)$1	240	101	108	18.7192
:::::::	chr11:93454846-93455133(+)$1	287	120	127	18.7192
2dddd]f	chr19:50000890-50001119(+)$1	229	90	97	17.0526
?????HH	chr4:83816913-83817180(-)$1	267	188	195	18.7192
f!!a[cc	chr17:27047482-27047701(+)$1	219	90	97	16.6140
"""bbdd	chr6:31804777-31804981(+)$1	204	78	85	18.7192
LLLBB{A	chr13:27829114-27829339(+)$1	225	91	98	18.7192
hhhhhhh	chr5:137896645-137896858(-)$1	213	63	70	18.7192
eeeee%%	chr3:186502495-186502727(+)$1	232	95	102	18.7192
f!!bb[e	chr17:74557630-74557859(+)$1	229	92	99	16.6140
ccc[a[c	chr17:27050600-27050807(+)$1	207	105	112	18.7192
eeee$$$	chr11:75111376-75111580(+)$1	204	70	77	17.0526
:::::::	chr2:203142783-203143008(+)$1	225	59	66	18.7192
CCCKKBB	chr18:47017935-47018151(-)$1	216	56	63	17.0526
:::hhhh	chr17:2232320-2232605(-)$1	285	108	115	18.7192
eeeeemm	chr9:33934197-33934468(-)$1	271	105	112	18.7192
FKKDDDD	chr1:173833902-173834104(-)$1	202	65	72	18.7192
gggggll	chr6:31504049-31504261(-)$1	212	39	46	18.7192
::::::C	chr11:93454578-93454891(+)$1	313	133	140	18.7192

#DB
(..((((	chr1:173833904-173834141(-)$1	1	102	109	18.7192
...((..	chr20:47895382-47895595(+)$1	1	103	110	18.7192
(..((((	chr20:47896797-47897036(+)$1	1	67	74	16.6140
(((((..	chr3:186502528-186502748(+)$1	1	62	69	18.7192
......(	chr6:133136346-133136556(+)$1	1	104	111	18.7192
...(((.	chr9:125642402-125642642(-)$1	1	61	68	18.7192
(.(((((	chr2:234184277-234184517(+)$1	1	99	106	17.0526
.......	chr4:74279205-74279419(+)$1	1	42	49	18.7192
...((((	chr17:74557098-74557322(+)$1	1	99	106	16.6140
...((((	chr1:173836717-173836977(-)$1	1	136	143	18.7192
...((((	chr17:74557138-74557355(+)$1	1	59	66	16.6140
(..(.((	chr11:62621299-62621532(-)$1	1	96	103	16.6140
...(((.	chr9:125642482-125642685(-)$1	1	104	111	18.7192
))))...	chr2:216286789-216287023(-)$1	1	139	146	16.6140
.......	chr15:25230146-25230397(+)$1	1	128	135	16.6140
(..((((	chr2:203155957-203156200(+)$1	1	104	111	18.7192
(((....	chr11:75111334-75111576(+)$1	1	112	119	17.0526
...((.(	chr18:47017954-47018166(-)$1	1	71	78	17.0526
(..((((	chr2:203156000-203156243(+)$1	1	61	68	18.7192
(((((((	chr1:76253475-76253752(+)$1	1	102	109	18.7192
.......	chr6:31802966-31803176(+)$1	1	76	83	17.0526
(..((((	chr11:17096099-17096343(-)$1	1	56	63	16.6140
...(((.	chr14:21865369-21865613(-)$1	1	57	64	18.7192
..(((..	chr20:47895418-47895647(+)$1	1	67	74	18.7192
...((((	chr17:74557122-74557331(+)$1	1	75	82	16.6140
(.((...	chr15:25227040-25227245(+)$1	1	104	111	16.6140
.......	chr15:25339083-25339292(+)$1	1	105	112	17.0526
(.(((((	chr2:234184271-234184477(+)$1	1	105	112	17.0526
(((....	chr11:93466307-93466558(-)$1	1	97	104	17.0526
(..((((	chr11:17096160-17096392(-)$1	1	105	112	16.6140
(((....	chr11:93466358-93466566(-)$1	1	105	112	17.0526
...))))	chr17:16344436-16344640(+)$1	1	104	111	18.7192
.....((	chr17:8076800-8077005(-)$1	1	152	159	16.6140
)))))))	chrX:135961293-135961532(-)$1	1	104	111	16.6140
(((((((	chr5:137896695-137896900(-)$1	1	105	112	18.7192
(((((..	chr6:31504078-31504296(-)$1	1	74	81	18.7192
.......	chr6:31802976-31803186(+)$1	1	66	73	17.0526
......(	chr15:66795085-66795302(-)$1	1	57	64	18.7192
...(((.	chr9:125642442-125642682(-)$1	1	101	108	18.7192
.......	chr11:93454846-93455133(+)$1	1	120	127	18.7192
.)))).)	chr19:50000890-50001119(+)$1	1	90	97	17.0526
.....))	chr4:83816913-83817180(-)$1	1	188	195	18.7192
(..(.((	chr17:27047482-27047701(+)$1	1	90	97	16.6140
...((((	chr6:31804777-31804981(+)$1	1	78	85	18.7192
...((.(	chr13:27829114-27829339(+)$1	1	91	98	18.7192
(((((((	chr5:137896645-137896858(-)$1	1	63	70	18.7192
(((((..	chr3:186502495-186502727(+)$1	1	95	102	18.7192
(..((.(	chr17:74557630-74557859(+)$1	1	92	99	16.6140
(((.(.(	chr17:27050600-27050807(+)$1	1	105	112	18.7192
((((...	chr11:75111376-75111580(+)$1	1	70	77	17.0526
.......	chr2:203142783-203143008(+)$1	1	59	66	18.7192
(((..((	chr18:47017935-47018151(-)$1	1	56	63	17.0526
...((((	chr17:2232320-2232605(-)$1	1	108	115	18.7192
(((((..	chr9:33934197-33934468(-)$1	1	105	112	18.7192
(..((((	chr1:173833902-173834104(-)$1	1	65	72	18.7192
(((((..	chr6:31504049-31504261(-)$1	1	39	46	18.7192
......)	chr11:93454578-93454891(+)$1	1	133	140	18.7192

#PSSM
A : 0.54	G : 0.21	C : 0.10	U : 0.08	u : 0.03	c : 0.01	
A : 0.94	a : 0.05	
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	
A : 0.94	a : 0.05	
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	

#score	1017.5263157894748
#seq	57
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_CDS_m2_run2.nuc.txt

#NT
CUGG	chr14:24612693-24612918(-)$1	225	104	108	12.0000
CUGG	chr17:79667975-79668228(+)$1	253	53	57	12.0000
CUGG	chr17:34862194-34862549(-)$1	355	6	10	12.0000
CUGG	chr3:9974537-9974822(+)$1	285	22	26	12.0000
CUGG	chr1:110170915-110171172(+)$1	257	173	177	12.0000
CUGG	chr21:46913318-46913571(+)$1	253	34	38	12.0000
CUGG	chr19:1055969-1056204(+)$1	235	33	37	12.0000
CUGG	chr19:7710024-7710273(+)$1	249	7	11	12.0000
CUGG	chr19:56179965-56180244(+)$1	279	115	119	12.0000
CUGG	chr20:62322119-62322365(+)$1	246	127	131	12.0000
CUGG	chr1:53370610-53370871(-)$1	261	59	63	12.0000
CUGG	chr6:31747696-31747956(-)$1	260	44	48	12.0000
CUGG	chr17:46058738-46058988(+)$1	250	231	235	12.0000
CUGG	chr6:31917115-31917330(+)$1	215	2	6	12.0000
CUGG	chr5:176885998-176886335(-)$1	337	48	52	12.0000
CUGG	chr10:101606737-101606984(+)$1	247	67	71	12.0000
CUGG	chr16:239145-239439(-)$1	294	9	13	12.0000
CUGG	chr3:48608450-48608694(-)$1	244	44	48	12.0000
CUGG	chr3:48450636-48450893(-)$1	257	24	28	12.0000
CUGG	chr11:65835352-65835581(+)$1	229	10	14	12.0000
CUGG	chr6:31937060-31937308(+)$1	248	101	105	12.0000
CUGG	chr16:31202191-31202420(+)$1	229	1	5	12.0000
CUGG	chr11:67816265-67816560(+)$1	295	24	28	12.0000
CUGG	chr6:30890575-30890822(+)$1	247	21	25	12.0000
CUGG	chr3:48602820-48603030(-)$1	210	20	24	12.0000
CUGG	chr20:39794221-39794445(+)$1	224	12	16	12.0000
CUGG	chr20:39797308-39797538(+)$1	230	76	80	12.0000
CUGG	chr4:1808768-1809009(+)$1	241	5	9	12.0000
CUGG	chr15:79215224-79215535(-)$1	311	118	122	12.0000
CUGG	chr9:131019555-131019852(-)$1	297	57	61	12.0000
CUGG	chr19:1244065-1244287(+)$1	222	98	102	12.0000
CUGG	chr2:27589624-27589888(-)$1	264	92	96	12.0000
CUGG	chr10:101611201-101611413(+)$1	212	122	126	12.0000
CUGG	chr19:45573207-45573456(+)$1	249	183	187	12.0000
CUGG	chrX:70782595-70782830(+)$1	235	110	114	12.0000
CUGG	chr6:170059450-170059715(-)$1	265	7	11	12.0000
CUGG	chr8:144662233-144662477(-)$1	244	49	53	12.0000
CUGG	chr17:38153716-38154042(+)$1	326	119	123	12.0000
CUGG	chr2:234371212-234371479(+)$1	267	62	66	12.0000
CUGG	chr6:31498738-31498955(-)$1	217	200	204	12.0000
CUGG	chr9:117071505-117071724(+)$1	219	146	150	12.0000
CUGG	chr16:89977392-89977633(+)$1	241	120	124	12.0000
CUGG	chr17:7219424-7219747(-)$1	323	166	170	12.0000
CUGG	chr7:100282038-100282271(-)$1	233	94	98	12.0000
CUGG	chr19:5917741-5918092(-)$1	351	63	67	12.0000
CUGG	chr7:933275-933496(+)$1	221	191	195	12.0000
CUGG	chr16:67181051-67181321(+)$1	270	77	81	12.0000
CUGG	chr15:34673583-34673856(-)$1	273	214	218	12.0000
CUGG	chr20:62594907-62595114(-)$1	207	11	15	12.0000
CUGG	chr21:46906744-46906984(+)$1	240	55	59	12.0000
cugg	chr17:46057858-46058090(+)$1	232	0	4	12.0000
CUGG	chr21:46930019-46930266(+)$1	247	54	58	12.0000
CUGG	chr19:42410511-42410852(+)$1	341	59	63	12.0000
CUGG	chr1:161090185-161090448(+)$1	263	216	220	12.0000
CUGG	chr15:73044831-73045123(-)$1	292	27	31	12.0000
CUGG	chrX:48462602-48462881(+)$1	279	19	23	12.0000
CUGG	chr11:72399398-72399655(-)$1	257	121	125	12.0000
CUGG	chr14:23240410-23240657(+)$1	247	67	71	12.0000
CUGG	chr20:61918925-61919167(+)$1	242	24	28	12.0000
CUGG	chr17:41605819-41606076(-)$1	257	139	143	12.0000
CUGG	chr6:30887767-30887987(+)$1	220	12	16	12.0000
CUGG	chr3:184101316-184101530(+)$1	214	36	40	12.0000
CUGG	chr19:10797980-10798270(+)$1	290	68	72	12.0000
CUGG	chr1:899636-899903(+)$1	267	20	24	12.0000
CUGG	chr9:117052999-117053238(+)$1	239	115	119	12.0000
CUGG	chr11:724643-724906(+)$1	263	50	54	12.0000
CUGG	chr3:48604466-48604723(-)$1	257	226	230	12.0000
CUGG	chr20:33867285-33867533(-)$1	248	20	24	12.0000
CUGG	chr7:933296-933547(+)$1	251	170	174	12.0000
CUGG	chr9:139754284-139754545(+)$1	261	118	122	12.0000
CUGG	chr10:101591409-101591644(+)$1	235	68	72	12.0000
CUGG	chr17:41606782-41607062(-)$1	280	101	105	12.0000
CUGG	chr14:24735879-24736151(-)$1	272	16	20	12.0000
CUGG	chr8:22429755-22429972(+)$1	217	15	19	12.0000
CUGG	chr11:65831080-65831301(+)$1	221	32	36	12.0000
CUGG	chr9:139753620-139753863(+)$1	243	58	62	12.0000
CUGG	chr2:220075009-220075262(-)$1	253	48	52	12.0000
CUGG	chr22:38020928-38021172(+)$1	244	19	23	12.0000
cugg	chr2:198351792-198352022(-)$1	230	0	4	12.0000
CUGG	chr2:97271020-97271322(-)$1	302	4	8	12.0000
CUGG	chr17:7127364-7127575(+)$1	211	79	83	12.0000
CUGG	chr7:150768136-150768455(+)$1	319	43	47	12.0000
CUGG	chr4:187209623-187209934(+)$1	311	24	28	12.0000
cUGG	chr17:80890438-80890712(+)$1	274	8	12	12.0000
CUGG	chr16:89612965-89613221(+)$1	256	87	91	12.0000
CUGG	chr3:52521368-52521716(+)$1	348	201	205	12.0000
CUGG	chr8:145619358-145619602(-)$1	244	36	40	12.0000
CUGG	chr12:58009519-58009800(+)$1	281	70	74	12.0000
CUGG	chr20:33433029-33433275(-)$1	246	10	14	12.0000
CUGG	chr15:90336169-90336409(-)$1	240	175	179	12.0000
CUGG	chr18:72183409-72183722(+)$1	313	5	9	12.0000

#otherMatches

#Struct PSSM
JJJJ	chr11:67377875-67378154(+)$1	279	31	35	12.0000
nnnn	chr14:24612693-24612918(-)$1	225	104	108	12.0000
{DDD	chr17:79667975-79668228(+)$1	253	53	57	12.0000
nncc	chr17:34862194-34862549(-)$1	355	6	10	12.0000
d[dd	chr3:9974537-9974822(+)$1	285	22	26	12.0000
}GGG	chr1:110170915-110171172(+)$1	257	173	177	12.0000
!!ee	chr21:46913318-46913571(+)$1	253	34	38	12.0000
ffff	chr19:1055969-1056204(+)$1	235	33	37	12.0000
CC{E	chr19:7710024-7710273(+)$1	249	7	11	12.0000
:DDD	chr19:56179965-56180244(+)$1	279	115	119	12.0000
fff!	chr20:62322119-62322365(+)$1	246	127	131	12.0000
{III	chr1:53370610-53370871(-)$1	261	59	63	12.0000
33dd	chr6:31747696-31747956(-)$1	260	44	48	12.0000
CCCC	chr17:46058738-46058988(+)$1	250	231	235	12.0000
::gg	chr6:31917115-31917330(+)$1	215	2	6	12.0000
JJJJ	chr5:176885998-176886335(-)$1	337	48	52	12.0000
{FFF	chr10:101606737-101606984(+)$1	247	67	71	12.0000
ooee	chr16:239145-239439(-)$1	294	9	13	12.0000
ccdd	chr3:48608450-48608694(-)$1	244	44	48	12.0000
IICC	chr3:48450636-48450893(-)$1	257	24	28	12.0000
ooff	chr11:65835352-65835581(+)$1	229	10	14	12.0000
ee[c	chr6:31937060-31937308(+)$1	248	101	105	12.0000
FFFF	chr16:31202191-31202420(+)$1	229	1	5	12.0000
ff[b	chr11:67816265-67816560(+)$1	295	24	28	12.0000
FFF{	chr6:30890575-30890822(+)$1	247	21	25	12.0000
qqqd	chr3:48602820-48603030(-)$1	210	20	24	12.0000
ffff	chr20:39794221-39794445(+)$1	224	12	16	12.0000
dddd	chr20:39797308-39797538(+)$1	230	76	80	12.0000
cccm	chr4:1808768-1809009(+)$1	241	5	9	12.0000
mmme	chr15:79215224-79215535(-)$1	311	118	122	12.0000
hh::	chr9:131019555-131019852(-)$1	297	57	61	12.0000
gggg	chr19:1244065-1244287(+)$1	222	98	102	12.0000
qqa]	chr2:27589624-27589888(-)$1	264	92	96	12.0000
[ccc	chr10:101611201-101611413(+)$1	212	122	126	12.0000
[ccc	chr19:45573207-45573456(+)$1	249	183	187	12.0000
gggg	chrX:70782595-70782830(+)$1	235	110	114	12.0000
JJJJ	chr6:170059450-170059715(-)$1	265	7	11	12.0000
FFFF	chr8:144662233-144662477(-)$1	244	49	53	12.0000
fff:	chr17:38153716-38154042(+)$1	326	119	123	12.0000
]ccc	chr2:234371212-234371479(+)$1	267	62	66	12.0000
::BB	chr6:31498738-31498955(-)$1	217	200	204	12.0000
YEEE	chr9:117071505-117071724(+)$1	219	146	150	12.0000
DDDI	chr16:89977392-89977633(+)$1	241	120	124	12.0000
ooob	chr17:7219424-7219747(-)$1	323	166	170	12.0000
]a]f	chr7:100282038-100282271(-)$1	233	94	98	12.0000
dmmm	chr19:5917741-5918092(-)$1	351	63	67	12.0000
bb]a	chr7:933275-933496(+)$1	221	191	195	12.0000
33dd	chr16:67181051-67181321(+)$1	270	77	81	12.0000
}BBF	chr15:34673583-34673856(-)$1	273	214	218	12.0000
dddm	chr20:62594907-62595114(-)$1	207	11	15	12.0000
cccc	chr21:46906744-46906984(+)$1	240	55	59	12.0000
bb[b	chr17:46057858-46058090(+)$1	232	0	4	12.0000
!!dd	chr21:46930019-46930266(+)$1	247	54	58	12.0000
{III	chr19:42410511-42410852(+)$1	341	59	63	12.0000
~GGG	chr1:161090185-161090448(+)$1	263	216	220	12.0000
[bb!	chr15:73044831-73045123(-)$1	292	27	31	12.0000
{BBE	chrX:48462602-48462881(+)$1	279	19	23	12.0000
oooo	chr11:72399398-72399655(-)$1	257	121	125	12.0000
d]cc	chr14:23240410-23240657(+)$1	247	67	71	12.0000
dCCC	chr20:61918925-61919167(+)$1	242	24	28	12.0000
!ggg	chr17:41605819-41606076(-)$1	257	139	143	12.0000
GG{D	chr6:30887767-30887987(+)$1	220	12	16	12.0000
occc	chr3:184101316-184101530(+)$1	214	36	40	12.0000
flll	chr19:10797980-10798270(+)$1	290	68	72	12.0000
eeem	chr1:899636-899903(+)$1	267	20	24	12.0000
HHHH	chr9:117052999-117053238(+)$1	239	115	119	12.0000
MHHH	chr11:724643-724906(+)$1	263	50	54	12.0000
eeFF	chr3:48604466-48604723(-)$1	257	226	230	12.0000
DKKA	chr20:33867285-33867533(-)$1	248	20	24	12.0000
ee!!	chr7:933296-933547(+)$1	251	170	174	12.0000
ggg[	chr9:139754284-139754545(+)$1	261	118	122	12.0000
cccl	chr10:101591409-101591644(+)$1	235	68	72	12.0000
eeee	chr17:41606782-41607062(-)$1	280	101	105	12.0000
gggg	chr14:24735879-24736151(-)$1	272	16	20	12.0000
c[ee	chr8:22429755-22429972(+)$1	217	15	19	12.0000
c[a[	chr11:65831080-65831301(+)$1	221	32	36	12.0000
dddc	chr9:139753620-139753863(+)$1	243	58	62	12.0000
ccc:	chr2:220075009-220075262(-)$1	253	48	52	12.0000
JJJC	chr22:38020928-38021172(+)$1	244	19	23	12.0000
:ccc	chr2:198351792-198352022(-)$1	230	0	4	12.0000
EEEE	chr2:97271020-97271322(-)$1	302	4	8	12.0000
ee22	chr17:7127364-7127575(+)$1	211	79	83	12.0000
::::	chr7:150768136-150768455(+)$1	319	43	47	12.0000
CC==	chr4:187209623-187209934(+)$1	311	24	28	12.0000
KFFF	chr17:80890438-80890712(+)$1	274	8	12	12.0000
qqqq	chr16:89612965-89613221(+)$1	256	87	91	12.0000
ffee	chr3:52521368-52521716(+)$1	348	201	205	12.0000
ffff	chr8:145619358-145619602(-)$1	244	36	40	12.0000
$$$b	chr12:58009519-58009800(+)$1	281	70	74	12.0000
HHHH	chr20:33433029-33433275(-)$1	246	10	14	12.0000
b:ff	chr15:90336169-90336409(-)$1	240	175	179	12.0000
DDCC	chr18:72183409-72183722(+)$1	313	5	9	12.0000

#DB
((((	chr11:67377875-67378154(+)$1	1	31	35	12.0000
....	chr14:24612693-24612918(-)$1	1	104	108	12.0000
.(((	chr17:79667975-79668228(+)$1	1	53	57	12.0000
..))	chr17:34862194-34862549(-)$1	1	6	10	12.0000
(.((	chr3:9974537-9974822(+)$1	1	22	26	12.0000
.)))	chr1:110170915-110171172(+)$1	1	173	177	12.0000
..((	chr21:46913318-46913571(+)$1	1	34	38	12.0000
((((	chr19:1055969-1056204(+)$1	1	33	37	12.0000
((.(	chr19:7710024-7710273(+)$1	1	7	11	12.0000
.(((	chr19:56179965-56180244(+)$1	1	115	119	12.0000
(((.	chr20:62322119-62322365(+)$1	1	127	131	12.0000
.(((	chr1:53370610-53370871(-)$1	1	59	63	12.0000
..))	chr6:31747696-31747956(-)$1	1	44	48	12.0000
))))	chr17:46058738-46058988(+)$1	1	231	235	12.0000
..((	chr6:31917115-31917330(+)$1	1	2	6	12.0000
((((	chr5:176885998-176886335(-)$1	1	48	52	12.0000
.(((	chr10:101606737-101606984(+)$1	1	67	71	12.0000
..))	chr16:239145-239439(-)$1	1	9	13	12.0000
((((	chr3:48608450-48608694(-)$1	1	44	48	12.0000
((((	chr3:48450636-48450893(-)$1	1	24	28	12.0000
..))	chr11:65835352-65835581(+)$1	1	10	14	12.0000
((.(	chr6:31937060-31937308(+)$1	1	101	105	12.0000
((((	chr16:31202191-31202420(+)$1	1	1	5	12.0000
((.(	chr11:67816265-67816560(+)$1	1	24	28	12.0000
(((.	chr6:30890575-30890822(+)$1	1	21	25	12.0000
...)	chr3:48602820-48603030(-)$1	1	20	24	12.0000
))))	chr20:39794221-39794445(+)$1	1	12	16	12.0000
))))	chr20:39797308-39797538(+)$1	1	76	80	12.0000
(((.	chr4:1808768-1809009(+)$1	1	5	9	12.0000
...)	chr15:79215224-79215535(-)$1	1	118	122	12.0000
))..	chr9:131019555-131019852(-)$1	1	57	61	12.0000
((((	chr19:1244065-1244287(+)$1	1	98	102	12.0000
..).	chr2:27589624-27589888(-)$1	1	92	96	12.0000
.(((	chr10:101611201-101611413(+)$1	1	122	126	12.0000
.(((	chr19:45573207-45573456(+)$1	1	183	187	12.0000
((((	chrX:70782595-70782830(+)$1	1	110	114	12.0000
((((	chr6:170059450-170059715(-)$1	1	7	11	12.0000
((((	chr8:144662233-144662477(-)$1	1	49	53	12.0000
))).	chr17:38153716-38154042(+)$1	1	119	123	12.0000
.)))	chr2:234371212-234371479(+)$1	1	62	66	12.0000
..))	chr6:31498738-31498955(-)$1	1	200	204	12.0000
.)))	chr9:117071505-117071724(+)$1	1	146	150	12.0000
))))	chr16:89977392-89977633(+)$1	1	120	124	12.0000
...)	chr17:7219424-7219747(-)$1	1	166	170	12.0000
.).)	chr7:100282038-100282271(-)$1	1	94	98	12.0000
(...	chr19:5917741-5918092(-)$1	1	63	67	12.0000
)).)	chr7:933275-933496(+)$1	1	191	195	12.0000
..))	chr16:67181051-67181321(+)$1	1	77	81	12.0000
.)))	chr15:34673583-34673856(-)$1	1	214	218	12.0000
(((.	chr20:62594907-62595114(-)$1	1	11	15	12.0000
))))	chr21:46906744-46906984(+)$1	1	55	59	12.0000
((.(	chr17:46057858-46058090(+)$1	1	0	4	12.0000
..((	chr21:46930019-46930266(+)$1	1	54	58	12.0000
.(((	chr19:42410511-42410852(+)$1	1	59	63	12.0000
.)))	chr1:161090185-161090448(+)$1	1	216	220	12.0000
.((.	chr15:73044831-73045123(-)$1	1	27	31	12.0000
.(((	chrX:48462602-48462881(+)$1	1	19	23	12.0000
....	chr11:72399398-72399655(-)$1	1	121	125	12.0000
).))	chr14:23240410-23240657(+)$1	1	67	71	12.0000
)(((	chr20:61918925-61919167(+)$1	1	24	28	12.0000
.(((	chr17:41605819-41606076(-)$1	1	139	143	12.0000
((.(	chr6:30887767-30887987(+)$1	1	12	16	12.0000
.)))	chr3:184101316-184101530(+)$1	1	36	40	12.0000
(...	chr19:10797980-10798270(+)$1	1	68	72	12.0000
(((.	chr1:899636-899903(+)$1	1	20	24	12.0000
))))	chr9:117052999-117053238(+)$1	1	115	119	12.0000
.(((	chr11:724643-724906(+)$1	1	50	54	12.0000
))))	chr3:48604466-48604723(-)$1	1	226	230	12.0000
(..(	chr20:33867285-33867533(-)$1	1	20	24	12.0000
((..	chr7:933296-933547(+)$1	1	170	174	12.0000
(((.	chr9:139754284-139754545(+)$1	1	118	122	12.0000
(((.	chr10:101591409-101591644(+)$1	1	68	72	12.0000
))))	chr17:41606782-41607062(-)$1	1	101	105	12.0000
))))	chr14:24735879-24736151(-)$1	1	16	20	12.0000
(.((	chr8:22429755-22429972(+)$1	1	15	19	12.0000
(.(.	chr11:65831080-65831301(+)$1	1	32	36	12.0000
)))(	chr9:139753620-139753863(+)$1	1	58	62	12.0000
))).	chr2:220075009-220075262(-)$1	1	48	52	12.0000
((((	chr22:38020928-38021172(+)$1	1	19	23	12.0000
.(((	chr2:198351792-198352022(-)$1	1	0	4	12.0000
((((	chr2:97271020-97271322(-)$1	1	4	8	12.0000
))..	chr17:7127364-7127575(+)$1	1	79	83	12.0000
....	chr7:150768136-150768455(+)$1	1	43	47	12.0000
((((	chr4:187209623-187209934(+)$1	1	24	28	12.0000
.(((	chr17:80890438-80890712(+)$1	1	8	12	12.0000
....	chr16:89612965-89613221(+)$1	1	87	91	12.0000
((((	chr3:52521368-52521716(+)$1	1	201	205	12.0000
((((	chr8:145619358-145619602(-)$1	1	36	40	12.0000
...(	chr12:58009519-58009800(+)$1	1	70	74	12.0000
((((	chr20:33433029-33433275(-)$1	1	10	14	12.0000
).((	chr15:90336169-90336409(-)$1	1	175	179	12.0000
((((	chr18:72183409-72183722(+)$1	1	5	9	12.0000

#PSSM
C : 0.96	c : 0.03	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	

#score	1104.0000000000007
#seq	92
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_UTR_m2_run2.nuc.txt

#NT
UUUUU	chr2:188328969-188329256(-)$1	287	68	73	15.0000
UUUUU	chr17:27076847-27077163(+)$1	316	139	144	15.0000
UUUUU	chr19:42752292-42752556(-)$1	264	92	97	15.0000
UUUUU	chr20:30252366-30252603(-)$1	237	53	58	15.0000
UUUUU	chr3:129033762-129034054(-)$1	292	124	129	15.0000
UUUUU	chr20:48740686-48740938(-)$1	252	82	87	15.0000
UUUUU	chr2:209101030-209101349(-)$1	319	75	80	15.0000
uuuuu	chrX:102612872-102613212(+)$1	340	65	70	15.0000
UUUUU	chr16:30995484-30995753(+)$1	269	68	73	15.0000
UUUUU	chr5:180218469-180218711(-)$1	242	188	193	15.0000
UUUUU	chr1:183595931-183596220(-)$1	289	51	56	15.0000
UUUUU	chr18:77662369-77662646(-)$1	277	88	93	15.0000
UUUUU	chr15:75931418-75931747(-)$1	329	228	233	15.0000
UUUUU	chr19:18731603-18731867(+)$1	264	43	48	15.0000
UUUUU	chr7:134127240-134127525(-)$1	285	100	105	15.0000
uuuuu	chr3:128338790-128339078(-)$1	288	7	12	15.0000
UUUUU	chr1:169101372-169101682(+)$1	310	0	5	15.0000
UUUUU	chr2:27604233-27604526(-)$1	293	129	134	15.0000
UUUUU	chrX:102632704-102632957(+)$1	253	98	103	15.0000
UUUUU	chr9:127113499-127113764(+)$1	265	224	229	15.0000
UUUUU	chr2:54045215-54045455(+)$1	240	86	91	15.0000
UUUUU	chr19:12841460-12841713(-)$1	253	91	96	15.0000
UUUUU	chr2:47387244-47387512(-)$1	268	47	52	15.0000
uuuuu	chr2:36777984-36778223(+)$1	239	52	57	15.0000
UUUUU	chr20:17594290-17594509(-)$1	219	19	24	15.0000
UUUUU	chrX:132669755-132669987(-)$1	232	226	231	15.0000
UUUUU	chr11:9610912-9611213(+)$1	301	46	51	15.0000
UUUUU	chr2:120129851-120130066(+)$1	215	99	104	15.0000
UUUUU	chr2:42559397-42559739(+)$1	342	149	154	15.0000
UUUUU	chr16:572183-572456(+)$1	273	21	26	15.0000
UUUUU	chr17:17715415-17715678(-)$1	263	30	35	15.0000
UUUUU	chr14:69846876-69847125(-)$1	249	51	56	15.0000
UUUUU	chr16:1399235-1399523(-)$1	288	104	109	15.0000
uuuuu	chr3:122078559-122078781(-)$1	222	76	81	15.0000
UUUUU	chr1:155107102-155107331(+)$1	229	179	184	15.0000
UUUUU	chr16:18802977-18803216(-)$1	239	31	36	15.0000
UUUUU	chr3:13358698-13358981(-)$1	283	5	10	15.0000
UUUUU	chr12:12875017-12875349(+)$1	332	69	74	15.0000
UUUUU	chr1:20978613-20978863(-)$1	250	153	158	15.0000
UUUUU	chr6:47199381-47199648(-)$1	267	81	86	15.0000
UUUUU	chr10:81114211-81114533(+)$1	322	146	151	15.0000
UUUUU	chr21:47609076-47609314(-)$1	238	38	43	15.0000
UUUUU	chr20:279674-279970(+)$1	296	23	28	15.0000
UUUUU	chr22:42303029-42303357(+)$1	328	178	183	15.0000
UUUUU	chr2:231743143-231743398(+)$1	255	98	103	15.0000
UUUUU	chr20:30194062-30194294(+)$1	232	84	89	15.0000
UUUUU	chr8:98863681-98864029(+)$1	348	139	144	15.0000
UUUUU	chr19:4543141-4543417(-)$1	276	79	84	15.0000
UUUUU	chr1:44089004-44089233(+)$1	229	199	204	15.0000
UUUUU	chr16:29821947-29822268(+)$1	321	36	41	15.0000
UUUUU	chr17:47005530-47005810(+)$1	280	234	239	15.0000
UUUUU	chr17:77807030-77807335(-)$1	305	201	206	15.0000
uuuuu	chr7:100277606-100277892(-)$1	286	79	84	15.0000
UUUUU	chr3:78646877-78647131(-)$1	254	14	19	15.0000
UUUUU	chr11:866798-867075(+)$1	277	92	97	15.0000
UUUUU	chr3:51426510-51426721(+)$1	211	75	80	15.0000
UUUUU	chr1:43392207-43392457(-)$1	250	3	8	15.0000
UUUUU	chr2:10923913-10924160(-)$1	247	43	48	15.0000
UUUUU	chr20:30156879-30157176(+)$1	297	12	17	15.0000
UUUUU	chr18:29128496-29128791(+)$1	295	249	254	15.0000
UUUUU	chr12:7311103-7311412(+)$1	309	252	257	15.0000
UUUUU	chr22:38203283-38203499(+)$1	216	19	24	15.0000
UUUUU	chr21:44592379-44592692(+)$1	313	102	107	15.0000

#otherMatches

#Struct PSSM
==lll	chr15:73852537-73852790(-)$1	253	63	68	15.0000
hhhh4	chr2:188328969-188329256(-)$1	287	68	73	15.0000
iiiii	chr17:27076847-27077163(+)$1	316	139	144	15.0000
tdddd	chr19:42752292-42752556(-)$1	264	92	97	15.0000
e$$$$	chr20:30252366-30252603(-)$1	237	53	58	15.0000
ttttf	chr3:129033762-129034054(-)$1	292	124	129	15.0000
=====	chr20:48740686-48740938(-)$1	252	82	87	15.0000
dd[ee	chr2:209101030-209101349(-)$1	319	75	80	15.0000
PPPPP	chrX:102612872-102613212(+)$1	340	65	70	15.0000
hhhhh	chr16:30995484-30995753(+)$1	269	68	73	15.0000
b[ddd	chr5:180218469-180218711(-)$1	242	188	193	15.0000
::::G	chr1:183595931-183596220(-)$1	289	51	56	15.0000
qqqqq	chr18:77662369-77662646(-)$1	277	88	93	15.0000
dddmm	chr15:75931418-75931747(-)$1	329	228	233	15.0000
:::::	chr19:18731603-18731867(+)$1	264	43	48	15.0000
:::::	chr7:134127240-134127525(-)$1	285	100	105	15.0000
=====	chr3:128338790-128339078(-)$1	288	7	12	15.0000
:::::	chr1:169101372-169101682(+)$1	310	0	5	15.0000
ee22c	chr2:27604233-27604526(-)$1	293	129	134	15.0000
:::::	chrX:102632704-102632957(+)$1	253	98	103	15.0000
ffff]	chr9:127113499-127113764(+)$1	265	224	229	15.0000
eee::	chr2:54045215-54045455(+)$1	240	86	91	15.0000
:::::	chr19:12841460-12841713(-)$1	253	91	96	15.0000
444gg	chr2:47387244-47387512(-)$1	268	47	52	15.0000
ggfff	chr2:36777984-36778223(+)$1	239	52	57	15.0000
:::II	chr20:17594290-17594509(-)$1	219	19	24	15.0000
B::::	chrX:132669755-132669987(-)$1	232	226	231	15.0000
:::::	chr11:9610912-9611213(+)$1	301	46	51	15.0000
fff::	chr2:120129851-120130066(+)$1	215	99	104	15.0000
F{HHH	chr2:42559397-42559739(+)$1	342	149	154	15.0000
qqqqc	chr16:572183-572456(+)$1	273	21	26	15.0000
ooooo	chr17:17715415-17715678(-)$1	263	30	35	15.0000
DD:::	chr14:69846876-69847125(-)$1	249	51	56	15.0000
:::::	chr16:1399235-1399523(-)$1	288	104	109	15.0000
sssss	chr3:122078559-122078781(-)$1	222	76	81	15.0000
ff:::	chr1:155107102-155107331(+)$1	229	179	184	15.0000
EEEhh	chr16:18802977-18803216(-)$1	239	31	36	15.0000
:::::	chr3:13358698-13358981(-)$1	283	5	10	15.0000
eeooo	chr12:12875017-12875349(+)$1	332	69	74	15.0000
ggggg	chr1:20978613-20978863(-)$1	250	153	158	15.0000
dd!!d	chr6:47199381-47199648(-)$1	267	81	86	15.0000
!!eee	chr10:81114211-81114533(+)$1	322	146	151	15.0000
gg)))	chr21:47609076-47609314(-)$1	238	38	43	15.0000
:::::	chr20:279674-279970(+)$1	296	23	28	15.0000
PPPPP	chr22:42303029-42303357(+)$1	328	178	183	15.0000
ggggg	chr2:231743143-231743398(+)$1	255	98	103	15.0000
=====	chr20:30194062-30194294(+)$1	232	84	89	15.0000
!!ccc	chr8:98863681-98864029(+)$1	348	139	144	15.0000
EEEKK	chr19:4543141-4543417(-)$1	276	79	84	15.0000
grrrr	chr1:44089004-44089233(+)$1	229	199	204	15.0000
=====	chr16:29821947-29822268(+)$1	321	36	41	15.0000
:::::	chr17:47005530-47005810(+)$1	280	234	239	15.0000
:::::	chr17:77807030-77807335(-)$1	305	201	206	15.0000
^^^^^	chr7:100277606-100277892(-)$1	286	79	84	15.0000
:::::	chr3:78646877-78647131(-)$1	254	14	19	15.0000
fdddd	chr11:866798-867075(+)$1	277	92	97	15.0000
dd22f	chr3:51426510-51426721(+)$1	211	75	80	15.0000
:::::	chr1:43392207-43392457(-)$1	250	3	8	15.0000
####e	chr2:10923913-10924160(-)$1	247	43	48	15.0000
ddd==	chr20:30156879-30157176(+)$1	297	12	17	15.0000
????D	chr18:29128496-29128791(+)$1	295	249	254	15.0000
h::::	chr12:7311103-7311412(+)$1	309	252	257	15.0000
eeeem	chr22:38203283-38203499(+)$1	216	19	24	15.0000
c$$$$	chr21:44592379-44592692(+)$1	313	102	107	15.0000

#DB
((...	chr15:73852537-73852790(-)$1	1	63	68	15.0000
)))).	chr2:188328969-188329256(-)$1	1	68	73	15.0000
)))))	chr17:27076847-27077163(+)$1	1	139	144	15.0000
.))))	chr19:42752292-42752556(-)$1	1	92	97	15.0000
(....	chr20:30252366-30252603(-)$1	1	53	58	15.0000
....)	chr3:129033762-129034054(-)$1	1	124	129	15.0000
(((((	chr20:48740686-48740938(-)$1	1	82	87	15.0000
((.((	chr2:209101030-209101349(-)$1	1	75	80	15.0000
.....	chrX:102612872-102613212(+)$1	1	65	70	15.0000
(((((	chr16:30995484-30995753(+)$1	1	68	73	15.0000
(.(((	chr5:180218469-180218711(-)$1	1	188	193	15.0000
....(	chr1:183595931-183596220(-)$1	1	51	56	15.0000
.....	chr18:77662369-77662646(-)$1	1	88	93	15.0000
(((..	chr15:75931418-75931747(-)$1	1	228	233	15.0000
.....	chr19:18731603-18731867(+)$1	1	43	48	15.0000
.....	chr7:134127240-134127525(-)$1	1	100	105	15.0000
(((((	chr3:128338790-128339078(-)$1	1	7	12	15.0000
.....	chr1:169101372-169101682(+)$1	1	0	5	15.0000
))..)	chr2:27604233-27604526(-)$1	1	129	134	15.0000
.....	chrX:102632704-102632957(+)$1	1	98	103	15.0000
)))).	chr9:127113499-127113764(+)$1	1	224	229	15.0000
)))..	chr2:54045215-54045455(+)$1	1	86	91	15.0000
.....	chr19:12841460-12841713(-)$1	1	91	96	15.0000
...))	chr2:47387244-47387512(-)$1	1	47	52	15.0000
(((((	chr2:36777984-36778223(+)$1	1	52	57	15.0000
...((	chr20:17594290-17594509(-)$1	1	19	24	15.0000
)....	chrX:132669755-132669987(-)$1	1	226	231	15.0000
.....	chr11:9610912-9611213(+)$1	1	46	51	15.0000
)))..	chr2:120129851-120130066(+)$1	1	99	104	15.0000
(.(((	chr2:42559397-42559739(+)$1	1	149	154	15.0000
....)	chr16:572183-572456(+)$1	1	21	26	15.0000
.....	chr17:17715415-17715678(-)$1	1	30	35	15.0000
((...	chr14:69846876-69847125(-)$1	1	51	56	15.0000
.....	chr16:1399235-1399523(-)$1	1	104	109	15.0000
.....	chr3:122078559-122078781(-)$1	1	76	81	15.0000
))...	chr1:155107102-155107331(+)$1	1	179	184	15.0000
(((((	chr16:18802977-18803216(-)$1	1	31	36	15.0000
.....	chr3:13358698-13358981(-)$1	1	5	10	15.0000
((...	chr12:12875017-12875349(+)$1	1	69	74	15.0000
(((((	chr1:20978613-20978863(-)$1	1	153	158	15.0000
((..(	chr6:47199381-47199648(-)$1	1	81	86	15.0000
..(((	chr10:81114211-81114533(+)$1	1	146	151	15.0000
((...	chr21:47609076-47609314(-)$1	1	38	43	15.0000
.....	chr20:279674-279970(+)$1	1	23	28	15.0000
.....	chr22:42303029-42303357(+)$1	1	178	183	15.0000
)))))	chr2:231743143-231743398(+)$1	1	98	103	15.0000
(((((	chr20:30194062-30194294(+)$1	1	84	89	15.0000
..(((	chr8:98863681-98864029(+)$1	1	139	144	15.0000
(((..	chr19:4543141-4543417(-)$1	1	79	84	15.0000
(....	chr1:44089004-44089233(+)$1	1	199	204	15.0000
(((((	chr16:29821947-29822268(+)$1	1	36	41	15.0000
.....	chr17:47005530-47005810(+)$1	1	234	239	15.0000
.....	chr17:77807030-77807335(-)$1	1	201	206	15.0000
.....	chr7:100277606-100277892(-)$1	1	79	84	15.0000
.....	chr3:78646877-78647131(-)$1	1	14	19	15.0000
(((((	chr11:866798-867075(+)$1	1	92	97	15.0000
))..)	chr3:51426510-51426721(+)$1	1	75	80	15.0000
.....	chr1:43392207-43392457(-)$1	1	3	8	15.0000
....(	chr2:10923913-10924160(-)$1	1	43	48	15.0000
(((((	chr20:30156879-30157176(+)$1	1	12	17	15.0000
....)	chr18:29128496-29128791(+)$1	1	249	254	15.0000
)....	chr12:7311103-7311412(+)$1	1	252	257	15.0000
((((.	chr22:38203283-38203499(+)$1	1	19	24	15.0000
(....	chr21:44592379-44592692(+)$1	1	102	107	15.0000

#PSSM
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	

#score	960.0
#seq	64
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_transcript_m1_run2.nuc.txt

#NT
GGA	chr20:34218871-34219128(-)$1	257	56	59	9.0000
GGA	chr7:2676135-2676431(+)$1	296	8	11	9.0000
GGA	chr3:50147882-50148165(+)$1	283	46	49	9.0000
GGA	chr17:75448127-75448366(+)$1	239	1	4	9.0000
GGA	chr21:46907188-46907422(+)$1	234	112	115	9.0000
GGA	chr17:79803542-79803790(-)$1	248	36	39	9.0000
GGA	chr2:85769513-85769774(+)$1	261	9	12	9.0000
GGA	chr3:195425744-195425970(+)$1	226	66	69	9.0000
GGA	chr3:48671234-48671514(-)$1	280	7	10	9.0000
GGA	chr7:100160231-100160527(+)$1	296	70	73	9.0000
GGA	chr11:72534161-72534420(+)$1	259	8	11	9.0000
GGA	chr2:85781392-85781625(-)$1	233	58	61	9.0000
GGA	chr12:56489037-56489282(+)$1	245	10	13	9.0000
GGA	chr17:4926577-4926835(+)$1	258	81	84	9.0000
GGA	chr3:48586897-48587133(-)$1	236	30	33	9.0000
GGA	chr17:7476842-7477067(+)$1	225	28	31	9.0000
GGA	chr19:2227017-2227314(+)$1	297	105	108	9.0000
GGA	chr17:80041955-80042180(-)$1	225	41	44	9.0000
GGA	chr16:81479649-81479878(+)$1	229	92	95	9.0000
GGA	chr1:235807553-235807800(-)$1	247	21	24	9.0000
GGA	chr3:49051481-49051733(+)$1	252	17	20	9.0000
GGA	chr4:1348087-1348403(+)$1	316	6	9	9.0000
GGA	chr20:43056818-43057057(+)$1	239	23	26	9.0000
GGA	chr22:50874598-50874861(+)$1	263	12	15	9.0000
GGA	chr2:85768575-85768818(+)$1	243	145	148	9.0000
GGA	chr20:61910073-61910320(+)$1	247	35	38	9.0000
GGA	chr3:53852976-53853265(-)$1	289	4	7	9.0000
GGA	chr20:33592284-33592519(-)$1	235	59	62	9.0000
GGA	chr5:154136217-154136485(+)$1	268	11	14	9.0000
gga	chr20:44515676-44515971(-)$1	295	23	26	9.0000
gga	chr20:36028346-36028598(+)$1	252	13	16	9.0000
GGA	chr2:242611425-242611694(+)$1	269	37	40	9.0000
GGA	chr1:45242171-45242415(+)$1	244	66	69	9.0000
GGA	chr20:36151576-36151858(-)$1	282	23	26	9.0000
GGA	chr14:54422778-54423026(-)$1	248	41	44	9.0000
GGA	chr20:422248-422506(-)$1	258	19	22	9.0000
gga	chr3:184099766-184100022(+)$1	256	138	141	9.0000
GGA	chr17:56082934-56083222(-)$1	288	33	36	9.0000
ggA	chr17:41613769-41614002(-)$1	233	27	30	9.0000
GGA	chr14:24114171-24114417(+)$1	246	32	35	9.0000
GGA	chr9:116971663-116971887(+)$1	224	2	5	9.0000
GGA	chr9:125851856-125852103(+)$1	247	55	58	9.0000
GGA	chr2:26432665-26432973(-)$1	308	7	10	9.0000
GGA	chr17:42398546-42398801(-)$1	255	95	98	9.0000
GGA	chr6:43488491-43488750(+)$1	259	10	13	9.0000
GGA	chr1:109944640-109944920(-)$1	280	35	38	9.0000
GGA	chr11:65192297-65192527(+)$1	230	28	31	9.0000
GGA	chr19:2111248-2111498(-)$1	250	14	17	9.0000
GGA	chr1:220383731-220384004(-)$1	273	38	41	9.0000
GGA	chr17:7477430-7477656(+)$1	226	14	17	9.0000
GGA	chr20:3199402-3199650(+)$1	248	43	46	9.0000
GGA	chr17:80190704-80190956(+)$1	252	20	23	9.0000
GGA	chr16:89555654-89555911(-)$1	257	19	22	9.0000
GGA	chr14:24616357-24616597(-)$1	240	112	115	9.0000
GGA	chr20:44986077-44986328(-)$1	251	76	79	9.0000
GGA	chr12:56491652-56491918(+)$1	266	76	79	9.0000
GGA	chr17:41607229-41607520(-)$1	291	88	91	9.0000
GGA	chr16:88723898-88724161(-)$1	263	58	61	9.0000
GGA	chrX:153627656-153627903(+)$1	247	90	93	9.0000
GGA	chr9:107586784-107587039(-)$1	255	88	91	9.0000
GGA	chr2:27424256-27424525(-)$1	269	65	68	9.0000
gga	chr16:81522806-81523051(+)$1	245	48	51	9.0000
GGA	chr10:43891695-43891984(-)$1	289	8	11	9.0000
GGA	chr20:57467358-57467634(+)$1	276	1	4	9.0000
gga	chr16:50663907-50664158(+)$1	251	24	27	9.0000
GGA	chr3:48461754-48461990(-)$1	236	46	49	9.0000
GGA	chr17:77966385-77966676(-)$1	291	56	59	9.0000
GGA	chr19:2271008-2271274(+)$1	266	5	8	9.0000
gga	chr20:33593519-33593775(-)$1	256	15	18	9.0000
GGA	chr4:1348280-1348534(+)$1	254	14	17	9.0000
GGA	chr20:3202319-3202569(+)$1	250	128	131	9.0000
GGA	chr16:85669016-85669315(+)$1	299	31	34	9.0000
GGA	chr20:34219611-34219858(-)$1	247	6	9	9.0000
GGA	chr11:61109873-61110111(+)$1	238	59	62	9.0000
GGA	chr17:79961806-79962067(+)$1	261	19	22	9.0000
gga	chr16:2809949-2810206(+)$1	257	0	3	9.0000
GGA	chr9:117050568-117050814(+)$1	246	105	108	9.0000
GGA	chr6:168366257-168366504(+)$1	247	15	18	9.0000
GGA	chr11:61634375-61634656(+)$1	281	6	9	9.0000
GGA	chr1:44883838-44884125(+)$1	287	31	34	9.0000
gga	chr9:131588355-131588607(-)$1	252	34	37	9.0000
GGA	chr22:37407260-37407535(-)$1	275	21	24	9.0000
GGA	chr11:66391461-66391716(+)$1	255	2	5	9.0000
gga	chr17:3527447-3527695(-)$1	248	33	36	9.0000
GGA	chr17:80050606-80050844(-)$1	238	64	67	9.0000
GGA	chr22:46683853-46684152(+)$1	299	42	45	9.0000
GGA	chr20:2819563-2819833(-)$1	270	1	4	9.0000
GGA	chr16:50642308-50642597(+)$1	289	6	9	9.0000
GGA	chr14:24032983-24033263(-)$1	280	26	29	9.0000
GGA	chr11:70199962-70200171(-)$1	209	50	53	9.0000
GGA	chr16:28845498-28845736(+)$1	238	19	22	9.0000
GGA	chr16:30673574-30673819(+)$1	245	31	34	9.0000
GGA	chr20:61594456-61594704(+)$1	248	16	19	9.0000
GGA	chr1:40035281-40035527(-)$1	246	100	103	9.0000
GGA	chr20:33592319-33592543(-)$1	224	2	5	9.0000
GGA	chr2:219142701-219142933(-)$1	232	122	125	9.0000
GGA	chr19:42756607-42756877(-)$1	270	5	8	9.0000
GGA	chr16:783961-784221(-)$1	260	28	31	9.0000
GGA	chr7:157689468-157689754(-)$1	286	8	11	9.0000

#otherMatches

#Struct PSSM
EEE	chr20:2819832-2820118(-)$1	286	21	24	9.0000
ccc	chr20:34218871-34219128(-)$1	257	56	59	9.0000
cmm	chr7:2676135-2676431(+)$1	296	8	11	9.0000
MMM	chr3:50147882-50148165(+)$1	283	46	49	9.0000
hhh	chr17:75448127-75448366(+)$1	239	1	4	9.0000
fff	chr21:46907188-46907422(+)$1	234	112	115	9.0000
A{G	chr17:79803542-79803790(-)$1	248	36	39	9.0000
III	chr2:85769513-85769774(+)$1	261	9	12	9.0000
ccm	chr3:195425744-195425970(+)$1	226	66	69	9.0000
bgg	chr3:48671234-48671514(-)$1	280	7	10	9.0000
mmd	chr7:100160231-100160527(+)$1	296	70	73	9.0000
CC{	chr11:72534161-72534420(+)$1	259	8	11	9.0000
eee	chr2:85781392-85781625(-)$1	233	58	61	9.0000
:::	chr12:56489037-56489282(+)$1	245	10	13	9.0000
fff	chr17:4926577-4926835(+)$1	258	81	84	9.0000
===	chr3:48586897-48587133(-)$1	236	30	33	9.0000
FFF	chr17:7476842-7477067(+)$1	225	28	31	9.0000
bb[	chr19:2227017-2227314(+)$1	297	105	108	9.0000
ggb	chr17:80041955-80042180(-)$1	225	41	44	9.0000
555	chr16:81479649-81479878(+)$1	229	92	95	9.0000
CCC	chr1:235807553-235807800(-)$1	247	21	24	9.0000
DD{	chr3:49051481-49051733(+)$1	252	17	20	9.0000
CLL	chr4:1348087-1348403(+)$1	316	6	9	9.0000
cc:	chr20:43056818-43057057(+)$1	239	23	26	9.0000
EKK	chr22:50874598-50874861(+)$1	263	12	15	9.0000
d[d	chr2:85768575-85768818(+)$1	243	145	148	9.0000
ooo	chr20:61910073-61910320(+)$1	247	35	38	9.0000
DDD	chr3:53852976-53853265(-)$1	289	4	7	9.0000
EEE	chr20:33592284-33592519(-)$1	235	59	62	9.0000
B{A	chr5:154136217-154136485(+)$1	268	11	14	9.0000
===	chr20:44515676-44515971(-)$1	295	23	26	9.0000
FFF	chr20:36028346-36028598(+)$1	252	13	16	9.0000
iii	chr2:242611425-242611694(+)$1	269	37	40	9.0000
ccc	chr1:45242171-45242415(+)$1	244	66	69	9.0000
==n	chr20:36151576-36151858(-)$1	282	23	26	9.0000
&&&	chr14:54422778-54423026(-)$1	248	41	44	9.0000
CCC	chr20:422248-422506(-)$1	258	19	22	9.0000
dee	chr3:184099766-184100022(+)$1	256	138	141	9.0000
e:e	chr17:56082934-56083222(-)$1	288	33	36	9.0000
cc"	chr17:41613769-41614002(-)$1	233	27	30	9.0000
EE{	chr14:24114171-24114417(+)$1	246	32	35	9.0000
DD{	chr9:116971663-116971887(+)$1	224	2	5	9.0000
fff	chr9:125851856-125852103(+)$1	247	55	58	9.0000
:::	chr2:26432665-26432973(-)$1	308	7	10	9.0000
eee	chr17:42398546-42398801(-)$1	255	95	98	9.0000
DDD	chr6:43488491-43488750(+)$1	259	10	13	9.0000
dmm	chr1:109944640-109944920(-)$1	280	35	38	9.0000
a!!	chr11:65192297-65192527(+)$1	230	28	31	9.0000
iii	chr19:2111248-2111498(-)$1	250	14	17	9.0000
BBK	chr1:220383731-220384004(-)$1	273	38	41	9.0000
EE{	chr17:7477430-7477656(+)$1	226	14	17	9.0000
cc[	chr20:3199402-3199650(+)$1	248	43	46	9.0000
eee	chr17:80190704-80190956(+)$1	252	20	23	9.0000
:::	chr16:89555654-89555911(-)$1	257	19	22	9.0000
fff	chr14:24616357-24616597(-)$1	240	112	115	9.0000
hh[	chr20:44986077-44986328(-)$1	251	76	79	9.0000
b]b	chr12:56491652-56491918(+)$1	266	76	79	9.0000
iii	chr17:41607229-41607520(-)$1	291	88	91	9.0000
ddd	chr16:88723898-88724161(-)$1	263	58	61	9.0000
C{A	chrX:153627656-153627903(+)$1	247	90	93	9.0000
ggg	chr9:107586784-107587039(-)$1	255	88	91	9.0000
fff	chr2:27424256-27424525(-)$1	269	65	68	9.0000
eee	chr16:81522806-81523051(+)$1	245	48	51	9.0000
ppp	chr10:43891695-43891984(-)$1	289	8	11	9.0000
::b	chr20:57467358-57467634(+)$1	276	1	4	9.0000
ddd	chr16:50663907-50664158(+)$1	251	24	27	9.0000
dd:	chr3:48461754-48461990(-)$1	236	46	49	9.0000
[cc	chr17:77966385-77966676(-)$1	291	56	59	9.0000
[a!	chr19:2271008-2271274(+)$1	266	5	8	9.0000
eee	chr20:33593519-33593775(-)$1	256	15	18	9.0000
lll	chr4:1348280-1348534(+)$1	254	14	17	9.0000
gg$	chr20:3202319-3202569(+)$1	250	128	131	9.0000
:::	chr16:85669016-85669315(+)$1	299	31	34	9.0000
DDD	chr20:34219611-34219858(-)$1	247	6	9	9.0000
ee2	chr11:61109873-61110111(+)$1	238	59	62	9.0000
=!!	chr17:79961806-79962067(+)$1	261	19	22	9.0000
:::	chr16:2809949-2810206(+)$1	257	0	3	9.0000
$$$	chr9:117050568-117050814(+)$1	246	105	108	9.0000
iio	chr6:168366257-168366504(+)$1	247	15	18	9.0000
f&&	chr11:61634375-61634656(+)$1	281	6	9	9.0000
DDD	chr1:44883838-44884125(+)$1	287	31	34	9.0000
CCK	chr9:131588355-131588607(-)$1	252	34	37	9.0000
ggg	chr22:37407260-37407535(-)$1	275	21	24	9.0000
EEE	chr11:66391461-66391716(+)$1	255	2	5	9.0000
bbb	chr17:3527447-3527695(-)$1	248	33	36	9.0000
ddd	chr17:80050606-80050844(-)$1	238	64	67	9.0000
:::	chr22:46683853-46684152(+)$1	299	42	45	9.0000
:::	chr20:2819563-2819833(-)$1	270	1	4	9.0000
dd[	chr16:50642308-50642597(+)$1	289	6	9	9.0000
:::	chr14:24032983-24033263(-)$1	280	26	29	9.0000
ggg	chr11:70199962-70200171(-)$1	209	50	53	9.0000
ccc	chr16:28845498-28845736(+)$1	238	19	22	9.0000
cc2	chr16:30673574-30673819(+)$1	245	31	34	9.0000
Ddd	chr20:61594456-61594704(+)$1	248	16	19	9.0000
ggl	chr1:40035281-40035527(-)$1	246	100	103	9.0000
DDL	chr20:33592319-33592543(-)$1	224	2	5	9.0000
bb[	chr2:219142701-219142933(-)$1	232	122	125	9.0000
dd[	chr19:42756607-42756877(-)$1	270	5	8	9.0000
:cc	chr16:783961-784221(-)$1	260	28	31	9.0000
&&&	chr7:157689468-157689754(-)$1	286	8	11	9.0000

#DB
(((	chr20:2819832-2820118(-)$1	1	21	24	9.0000
)))	chr20:34218871-34219128(-)$1	1	56	59	9.0000
(..	chr7:2676135-2676431(+)$1	1	8	11	9.0000
...	chr3:50147882-50148165(+)$1	1	46	49	9.0000
(((	chr17:75448127-75448366(+)$1	1	1	4	9.0000
)))	chr21:46907188-46907422(+)$1	1	112	115	9.0000
(.(	chr17:79803542-79803790(-)$1	1	36	39	9.0000
(((	chr2:85769513-85769774(+)$1	1	9	12	9.0000
((.	chr3:195425744-195425970(+)$1	1	66	69	9.0000
(((	chr3:48671234-48671514(-)$1	1	7	10	9.0000
..)	chr7:100160231-100160527(+)$1	1	70	73	9.0000
((.	chr11:72534161-72534420(+)$1	1	8	11	9.0000
(((	chr2:85781392-85781625(-)$1	1	58	61	9.0000
...	chr12:56489037-56489282(+)$1	1	10	13	9.0000
(((	chr17:4926577-4926835(+)$1	1	81	84	9.0000
(((	chr3:48586897-48587133(-)$1	1	30	33	9.0000
(((	chr17:7476842-7477067(+)$1	1	28	31	9.0000
((.	chr19:2227017-2227314(+)$1	1	105	108	9.0000
(((	chr17:80041955-80042180(-)$1	1	41	44	9.0000
...	chr16:81479649-81479878(+)$1	1	92	95	9.0000
(((	chr1:235807553-235807800(-)$1	1	21	24	9.0000
((.	chr3:49051481-49051733(+)$1	1	17	20	9.0000
(..	chr4:1348087-1348403(+)$1	1	6	9	9.0000
)).	chr20:43056818-43057057(+)$1	1	23	26	9.0000
(..	chr22:50874598-50874861(+)$1	1	12	15	9.0000
(.(	chr2:85768575-85768818(+)$1	1	145	148	9.0000
...	chr20:61910073-61910320(+)$1	1	35	38	9.0000
(((	chr3:53852976-53853265(-)$1	1	4	7	9.0000
(((	chr20:33592284-33592519(-)$1	1	59	62	9.0000
(.(	chr5:154136217-154136485(+)$1	1	11	14	9.0000
(((	chr20:44515676-44515971(-)$1	1	23	26	9.0000
(((	chr20:36028346-36028598(+)$1	1	13	16	9.0000
)))	chr2:242611425-242611694(+)$1	1	37	40	9.0000
(((	chr1:45242171-45242415(+)$1	1	66	69	9.0000
((.	chr20:36151576-36151858(-)$1	1	23	26	9.0000
...	chr14:54422778-54423026(-)$1	1	41	44	9.0000
(((	chr20:422248-422506(-)$1	1	19	22	9.0000
)))	chr3:184099766-184100022(+)$1	1	138	141	9.0000
).(	chr17:56082934-56083222(-)$1	1	33	36	9.0000
((.	chr17:41613769-41614002(-)$1	1	27	30	9.0000
((.	chr14:24114171-24114417(+)$1	1	32	35	9.0000
((.	chr9:116971663-116971887(+)$1	1	2	5	9.0000
)))	chr9:125851856-125852103(+)$1	1	55	58	9.0000
...	chr2:26432665-26432973(-)$1	1	7	10	9.0000
)))	chr17:42398546-42398801(-)$1	1	95	98	9.0000
(((	chr6:43488491-43488750(+)$1	1	10	13	9.0000
(..	chr1:109944640-109944920(-)$1	1	35	38	9.0000
(..	chr11:65192297-65192527(+)$1	1	28	31	9.0000
(((	chr19:2111248-2111498(-)$1	1	14	17	9.0000
((.	chr1:220383731-220384004(-)$1	1	38	41	9.0000
((.	chr17:7477430-7477656(+)$1	1	14	17	9.0000
((.	chr20:3199402-3199650(+)$1	1	43	46	9.0000
(((	chr17:80190704-80190956(+)$1	1	20	23	9.0000
...	chr16:89555654-89555911(-)$1	1	19	22	9.0000
)))	chr14:24616357-24616597(-)$1	1	112	115	9.0000
((.	chr20:44986077-44986328(-)$1	1	76	79	9.0000
).)	chr12:56491652-56491918(+)$1	1	76	79	9.0000
)))	chr17:41607229-41607520(-)$1	1	88	91	9.0000
)))	chr16:88723898-88724161(-)$1	1	58	61	9.0000
(.(	chrX:153627656-153627903(+)$1	1	90	93	9.0000
)))	chr9:107586784-107587039(-)$1	1	88	91	9.0000
)))	chr2:27424256-27424525(-)$1	1	65	68	9.0000
(((	chr16:81522806-81523051(+)$1	1	48	51	9.0000
...	chr10:43891695-43891984(-)$1	1	8	11	9.0000
..(	chr20:57467358-57467634(+)$1	1	1	4	9.0000
(((	chr16:50663907-50664158(+)$1	1	24	27	9.0000
)).	chr3:48461754-48461990(-)$1	1	46	49	9.0000
.((	chr17:77966385-77966676(-)$1	1	56	59	9.0000
.(.	chr19:2271008-2271274(+)$1	1	5	8	9.0000
(((	chr20:33593519-33593775(-)$1	1	15	18	9.0000
...	chr4:1348280-1348534(+)$1	1	14	17	9.0000
((.	chr20:3202319-3202569(+)$1	1	128	131	9.0000
...	chr16:85669016-85669315(+)$1	1	31	34	9.0000
(((	chr20:34219611-34219858(-)$1	1	6	9	9.0000
)).	chr11:61109873-61110111(+)$1	1	59	62	9.0000
(..	chr17:79961806-79962067(+)$1	1	19	22	9.0000
...	chr16:2809949-2810206(+)$1	1	0	3	9.0000
...	chr9:117050568-117050814(+)$1	1	105	108	9.0000
((.	chr6:168366257-168366504(+)$1	1	15	18	9.0000
(..	chr11:61634375-61634656(+)$1	1	6	9	9.0000
(((	chr1:44883838-44884125(+)$1	1	31	34	9.0000
((.	chr9:131588355-131588607(-)$1	1	34	37	9.0000
(((	chr22:37407260-37407535(-)$1	1	21	24	9.0000
(((	chr11:66391461-66391716(+)$1	1	2	5	9.0000
(((	chr17:3527447-3527695(-)$1	1	33	36	9.0000
)))	chr17:80050606-80050844(-)$1	1	64	67	9.0000
...	chr22:46683853-46684152(+)$1	1	42	45	9.0000
...	chr20:2819563-2819833(-)$1	1	1	4	9.0000
((.	chr16:50642308-50642597(+)$1	1	6	9	9.0000
...	chr14:24032983-24033263(-)$1	1	26	29	9.0000
)))	chr11:70199962-70200171(-)$1	1	50	53	9.0000
)))	chr16:28845498-28845736(+)$1	1	19	22	9.0000
)).	chr16:30673574-30673819(+)$1	1	31	34	9.0000
(((	chr20:61594456-61594704(+)$1	1	16	19	9.0000
((.	chr1:40035281-40035527(-)$1	1	100	103	9.0000
((.	chr20:33592319-33592543(-)$1	1	2	5	9.0000
((.	chr2:219142701-219142933(-)$1	1	122	125	9.0000
((.	chr19:42756607-42756877(-)$1	1	5	8	9.0000
.((	chr16:783961-784221(-)$1	1	28	31	9.0000
...	chr7:157689468-157689754(-)$1	1	8	11	9.0000

#PSSM
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	
A : 0.91	a : 0.09	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_UTR_m3_run2.nuc.txt

#NT
GGACUGG	chr16:89627224-89627444(+)$1	220	190	197	13.4999
GGGCUGG	chr1:43829172-43829432(-)$1	260	150	157	17.3235
GGGCUGG	chrX:152935326-152935571(-)$1	245	69	76	17.3235
GGCCUGG	chr7:100171653-100171895(-)$1	242	118	125	13.9411
GGCCUGG	chr8:145736620-145736859(-)$1	239	7	14	13.9411
AGGCUGG	chr17:76108959-76109225(-)$1	266	123	130	13.6470
GAGCUGG	chr19:3208802-3209109(+)$1	307	207	214	13.4999
GGGCUGG	chr17:7127405-7127660(+)$1	255	241	248	17.3235
AGGCUGG	chr11:770449-770713(-)$1	264	106	113	13.6470
CGGCUGG	chr20:60884671-60884893(-)$1	222	25	32	13.2794
GGGCAGG	chr8:145617871-145618139(+)$1	268	249	256	13.2058
GAGCUGG	chr7:100171055-100171334(-)$1	279	89	96	13.4999
GGGCUGU	chr19:2425982-2426253(-)$1	271	4	11	12.7647
GGCCUGG	chr2:220403259-220403545(+)$1	286	45	52	13.9411
AGGCUGG	chr19:1474138-1474391(-)$1	253	185	192	13.6470
GGCCUGG	chr6:34204776-34205007(+)$1	231	140	147	13.9411
gggcagg	chrX:151121790-151122033(-)$1	243	7	14	13.2058
GGUCUGG	chr19:2270329-2270593(+)$1	264	107	114	13.6470
gggcugg	chr1:36789200-36789492(+)$1	292	91	98	17.3235
GGGCUGG	chr12:125398628-125398884(-)$1	256	48	55	17.3235
GGGCUGG	chr11:47186401-47186700(-)$1	299	236	243	17.3235
GGGCUGG	chr19:1815410-1815679(-)$1	269	168	175	17.3235
UGGCUGG	chr17:80445688-80445951(+)$1	263	246	253	13.5735
ggccUGG	chr3:128211736-128211977(+)$1	241	43	50	13.9411
GGGCGGG	chr22:20099911-20100163(-)$1	252	128	135	13.2058
GGGCUGG	chr19:12811076-12811319(-)$1	243	40	47	17.3235
GGGCUGG	chr22:19957805-19958071(-)$1	266	121	128	17.3235
ggccugg	chr3:47050714-47050974(+)$1	260	134	141	13.9411
UGGCUGG	chr11:67379512-67379786(+)$1	274	33	40	13.5735
GAGCUGG	chr16:89663276-89663518(+)$1	242	20	27	13.4999
UGGCUGG	chr1:1431246-1431590(+)$1	344	287	294	13.5735
GUGCUGG	chr1:156109470-156109770(+)$1	300	213	220	13.4999
GGGCUGG	chr19:55741369-55741628(-)$1	259	54	61	17.3235
AGGCUGG	chr19:18547582-18547850(-)$1	268	161	168	13.6470
GGGCUGG	chrX:53221729-53221980(-)$1	251	98	105	17.3235
GGGCUGU	chr7:930551-930797(+)$1	246	65	72	12.7647
GGACUGG	chr6:33383629-33383934(+)$1	305	112	119	13.4999
GGGCAGG	chr2:74689769-74690015(-)$1	246	42	49	13.2058
UGGCUGG	chr7:45139689-45140013(-)$1	324	3	10	13.5735
GUGCUGG	chr3:50367708-50368054(-)$1	346	154	161	13.4999
UGGCUGG	chr22:19711584-19711816(+)$1	232	88	95	13.5735
GGCCUGG	chr7:100171695-100171981(-)$1	286	204	211	13.9411
GGUCUGG	chr2:85772094-85772314(+)$1	220	73	80	13.6470
GGGCUGU	chr1:156219098-156219372(-)$1	274	74	81	12.7647
GGGCUGG	chr17:72858733-72858971(-)$1	238	87	94	17.3235
GAGCUGG	chr16:89663066-89663333(+)$1	267	230	237	13.4999
GGGCGGG	chrX:48830079-48830383(-)$1	304	294	301	13.2058
gggcugg	chr9:139560091-139560350(+)$1	259	229	236	17.3235
GGGCUGG	chr16:242827-243088(-)$1	261	173	180	17.3235
GGGCGGG	chr16:633546-633804(+)$1	258	130	137	13.2058
GUGCUGG	chr16:67862303-67862563(-)$1	260	210	217	13.4999
GGCCUGG	chr2:232574485-232574760(+)$1	275	253	260	13.9411
GCGCUGG	chr19:18546275-18546521(-)$1	246	77	84	13.2058
GGGCAGG	chr14:23794566-23794800(+)$1	234	140	147	13.2058
GGUCUGG	chrX:153609547-153609759(+)$1	212	23	30	13.6470
GAGCUGG	chr9:139756698-139756943(-)$1	245	105	112	13.4999
GGGCUGG	chr16:2138705-2138997(-)$1	292	67	74	17.3235
GGGCUGG	chr1:1683934-1684252(-)$1	318	122	129	17.3235
GGGCUGG	chr2:220403043-220403315(+)$1	272	190	197	17.3235
GGGCGGG	chr19:18544940-18545222(+)$1	282	19	26	13.2058
GGGCUUG	chr7:934872-935120(+)$1	248	38	45	12.6176
GGGCUUG	chr1:156109200-156109461(+)$1	261	217	224	12.6176
AGGCUGG	chr19:798347-798602(+)$1	255	40	47	13.6470
gugcugg	chr2:175430836-175431088(+)$1	252	44	51	13.4999
GUGCUGG	chr17:80443423-80443631(+)$1	208	98	105	13.4999
GGUCUGG	chr2:85772007-85772294(+)$1	287	160	167	13.6470
GGGCUGG	chr11:67053775-67054027(+)$1	252	126	133	17.3235

#otherMatches

#Struct PSSM
eee::ff	chr6:33383831-33384111(+)$1	280	164	171	13.6470
BB}CCC}	chr16:89627224-89627444(+)$1	220	190	197	13.4999
GGGGGGG	chr1:43829172-43829432(-)$1	260	150	157	17.3235
ddd:DDD	chrX:152935326-152935571(-)$1	245	69	76	17.3235
h4444==	chr7:100171653-100171895(-)$1	242	118	125	13.9411
hhhh!!c	chr8:145736620-145736859(-)$1	239	7	14	13.9411
peeeee2	chr17:76108959-76109225(-)$1	266	123	130	13.6470
44fffff	chr19:3208802-3209109(+)$1	307	207	214	13.4999
YYGGGGG	chr17:7127405-7127660(+)$1	255	241	248	17.3235
dlllddd	chr11:770449-770713(-)$1	264	106	113	13.6470
:CCC{BB	chr20:60884671-60884893(-)$1	222	25	32	13.2794
mccc:::	chr8:145617871-145618139(+)$1	268	249	256	13.2058
""dddd%	chr7:100171055-100171334(-)$1	279	89	96	13.4999
iiiiiii	chr19:2425982-2426253(-)$1	271	4	11	12.7647
EEEEE{D	chr2:220403259-220403545(+)$1	286	45	52	13.9411
gggg!!d	chr19:1474138-1474391(-)$1	253	185	192	13.6470
CCCYYFF	chr6:34204776-34205007(+)$1	231	140	147	13.9411
eee!!dd	chrX:151121790-151122033(-)$1	243	7	14	13.2058
dbba]bb	chr19:2270329-2270593(+)$1	264	107	114	13.6470
:eeeee^	chr1:36789200-36789492(+)$1	292	91	98	17.3235
ffbbmmm	chr12:125398628-125398884(-)$1	256	48	55	17.3235
FFFFF??	chr11:47186401-47186700(-)$1	299	236	243	17.3235
ggggggg	chr19:1815410-1815679(-)$1	269	168	175	17.3235
:EEEEE:	chr17:80445688-80445951(+)$1	263	246	253	13.5735
a[ddddx	chr3:128211736-128211977(+)$1	241	43	50	13.9411
DDA}HHH	chr22:20099911-20100163(-)$1	252	128	135	13.2058
EEEE:CC	chr19:12811076-12811319(-)$1	243	40	47	17.3235
gggg!!c	chr22:19957805-19958071(-)$1	266	121	128	17.3235
!eeeee[	chr3:47050714-47050974(+)$1	260	134	141	13.9411
[bb!!a[	chr11:67379512-67379786(+)$1	274	33	40	13.5735
KKACCCc	chr16:89663276-89663518(+)$1	242	20	27	13.4999
lcccddd	chr1:1431246-1431590(+)$1	344	287	294	13.5735
C}FFFFF	chr1:156109470-156109770(+)$1	300	213	220	13.4999
ffffffb	chr19:55741369-55741628(-)$1	259	54	61	17.3235
ggggg44	chr19:18547582-18547850(-)$1	268	161	168	13.6470
CCC{CCC	chrX:53221729-53221980(-)$1	251	98	105	17.3235
:cccccc	chr7:930551-930797(+)$1	246	65	72	12.7647
ff22eee	chr6:33383629-33383934(+)$1	305	112	119	13.4999
CCCCCCE	chr2:74689769-74690015(-)$1	246	42	49	13.2058
EE{DDDD	chr7:45139689-45140013(-)$1	324	3	10	13.5735
dd[eeee	chr3:50367708-50368054(-)$1	346	154	161	13.4999
DDDDYYA	chr22:19711584-19711816(+)$1	232	88	95	13.5735
h4444==	chr7:100171695-100171981(-)$1	286	204	211	13.9411
fffdddd	chr2:85772094-85772314(+)$1	220	73	80	13.6470
ggggggg	chr1:156219098-156219372(-)$1	274	74	81	12.7647
:gggggg	chr17:72858733-72858971(-)$1	238	87	94	17.3235
JJJJJDD	chr16:89663066-89663333(+)$1	267	230	237	13.4999
GGGG}DD	chrX:48830079-48830383(-)$1	304	294	301	13.2058
=====]a	chr9:139560091-139560350(+)$1	259	229	236	17.3235
mdddd]b	chr16:242827-243088(-)$1	261	173	180	17.3235
llla]a]	chr16:633546-633804(+)$1	258	130	137	13.2058
YYBB}GG	chr16:67862303-67862563(-)$1	260	210	217	13.4999
dd22ccc	chr2:232574485-232574760(+)$1	275	253	260	13.9411
gggggg'	chr19:18546275-18546521(-)$1	246	77	84	13.2058
=======	chr14:23794566-23794800(+)$1	234	140	147	13.2058
JJJJJJJ	chrX:153609547-153609759(+)$1	212	23	30	13.6470
cffffff	chr9:139756698-139756943(-)$1	245	105	112	13.4999
iiimmmm	chr16:2138705-2138997(-)$1	292	67	74	17.3235
aHHHHHH	chr1:1683934-1684252(-)$1	318	122	129	17.3235
eeeee22	chr2:220403043-220403315(+)$1	272	190	197	17.3235
eeeeddd	chr19:18544940-18545222(+)$1	282	19	26	13.2058
a[ggggg	chr7:934872-935120(+)$1	248	38	45	12.6176
mhhhhhh	chr1:156109200-156109461(+)$1	261	217	224	12.6176
ggg[bbc	chr19:798347-798602(+)$1	255	40	47	13.6470
b]ddddg	chr2:175430836-175431088(+)$1	252	44	51	13.4999
ppppppp	chr17:80443423-80443631(+)$1	208	98	105	13.4999
fffdddd	chr2:85772007-85772294(+)$1	287	160	167	13.6470
hhh[eee	chr11:67053775-67054027(+)$1	252	126	133	17.3235

#DB
)))..((	chr6:33383831-33384111(+)$1	1	164	171	13.6470
)).))).	chr16:89627224-89627444(+)$1	1	190	197	13.4999
(((((((	chr1:43829172-43829432(-)$1	1	150	157	17.3235
))).(((	chrX:152935326-152935571(-)$1	1	69	76	17.3235
)....))	chr7:100171653-100171895(-)$1	1	118	125	13.9411
((((..(	chr8:145736620-145736859(-)$1	1	7	14	13.9411
.))))).	chr17:76108959-76109225(-)$1	1	123	130	13.6470
..)))))	chr19:3208802-3209109(+)$1	1	207	214	13.4999
..)))))	chr17:7127405-7127660(+)$1	1	241	248	17.3235
(...)))	chr11:770449-770713(-)$1	1	106	113	13.6470
.(((.((	chr20:60884671-60884893(-)$1	1	25	32	13.2794
.)))...	chr8:145617871-145618139(+)$1	1	249	256	13.2058
..((((.	chr7:100171055-100171334(-)$1	1	89	96	13.4999
(((((((	chr19:2425982-2426253(-)$1	1	4	11	12.7647
(((((.(	chr2:220403259-220403545(+)$1	1	45	52	13.9411
((((..(	chr19:1474138-1474391(-)$1	1	185	192	13.6470
)))..))	chr6:34204776-34205007(+)$1	1	140	147	13.9411
(((..((	chrX:151121790-151122033(-)$1	1	7	14	13.2058
)))).))	chr19:2270329-2270593(+)$1	1	107	114	13.6470
.(((((.	chr1:36789200-36789492(+)$1	1	91	98	17.3235
((((...	chr12:125398628-125398884(-)$1	1	48	55	17.3235
)))))..	chr11:47186401-47186700(-)$1	1	236	243	17.3235
(((((((	chr19:1815410-1815679(-)$1	1	168	175	17.3235
.))))).	chr17:80445688-80445951(+)$1	1	246	253	13.5735
(.((((.	chr3:128211736-128211977(+)$1	1	43	50	13.9411
))).)))	chr22:20099911-20100163(-)$1	1	128	135	13.2058
((((.((	chr19:12811076-12811319(-)$1	1	40	47	17.3235
((((..(	chr22:19957805-19958071(-)$1	1	121	128	17.3235
.(((((.	chr3:47050714-47050974(+)$1	1	134	141	13.9411
.((..(.	chr11:67379512-67379786(+)$1	1	33	40	13.5735
..(((((	chr16:89663276-89663518(+)$1	1	20	27	13.4999
.))))))	chr1:1431246-1431590(+)$1	1	287	294	13.5735
).)))))	chr1:156109470-156109770(+)$1	1	213	220	13.4999
(((((((	chr19:55741369-55741628(-)$1	1	54	61	17.3235
)))))..	chr19:18547582-18547850(-)$1	1	161	168	13.6470
(((.(((	chrX:53221729-53221980(-)$1	1	98	105	17.3235
.((((((	chr7:930551-930797(+)$1	1	65	72	12.7647
))..)))	chr6:33383629-33383934(+)$1	1	112	119	13.4999
(((((((	chr2:74689769-74690015(-)$1	1	42	49	13.2058
((.((((	chr7:45139689-45140013(-)$1	1	3	10	13.5735
((.((((	chr3:50367708-50368054(-)$1	1	154	161	13.4999
))))..)	chr22:19711584-19711816(+)$1	1	88	95	13.5735
)....))	chr7:100171695-100171981(-)$1	1	204	211	13.9411
)))))))	chr2:85772094-85772314(+)$1	1	73	80	13.6470
)))))))	chr1:156219098-156219372(-)$1	1	74	81	12.7647
.((((((	chr17:72858733-72858971(-)$1	1	87	94	17.3235
)))))))	chr16:89663066-89663333(+)$1	1	230	237	13.4999
)))).))	chrX:48830079-48830383(-)$1	1	294	301	13.2058
))))).)	chr9:139560091-139560350(+)$1	1	229	236	17.3235
.)))).)	chr16:242827-243088(-)$1	1	173	180	17.3235
...).).	chr16:633546-633804(+)$1	1	130	137	13.2058
..)).))	chr16:67862303-67862563(-)$1	1	210	217	13.4999
))..)))	chr2:232574485-232574760(+)$1	1	253	260	13.9411
((((((.	chr19:18546275-18546521(-)$1	1	77	84	13.2058
(((((((	chr14:23794566-23794800(+)$1	1	140	147	13.2058
(((((((	chrX:153609547-153609759(+)$1	1	23	30	13.6470
)((((((	chr9:139756698-139756943(-)$1	1	105	112	13.4999
(((....	chr16:2138705-2138997(-)$1	1	67	74	17.3235
)((((((	chr1:1683934-1684252(-)$1	1	122	129	17.3235
)))))..	chr2:220403043-220403315(+)$1	1	190	197	17.3235
(((((((	chr19:18544940-18545222(+)$1	1	19	26	13.2058
(.(((((	chr7:934872-935120(+)$1	1	38	45	12.6176
.))))))	chr1:156109200-156109461(+)$1	1	217	224	12.6176
(((.(((	chr19:798347-798602(+)$1	1	40	47	13.6470
).)))))	chr2:175430836-175431088(+)$1	1	44	51	13.4999
.......	chr17:80443423-80443631(+)$1	1	98	105	13.4999
)))))))	chr2:85772007-85772294(+)$1	1	160	167	13.6470
(((.(((	chr11:67053775-67054027(+)$1	1	126	133	17.3235

#PSSM
G : 0.73	A : 0.08	g : 0.08	U : 0.07	C : 0.01	
G : 0.76	A : 0.07	g : 0.07	U : 0.05	C : 0.01	u : 0.01	
G : 0.73	C : 0.08	g : 0.05	U : 0.05	A : 0.02	c : 0.02	
C : 0.91	c : 0.08	
U : 0.82	u : 0.05	G : 0.05	A : 0.04	a : 0.01	
G : 0.89	g : 0.07	U : 0.02	
G : 0.88	g : 0.07	U : 0.04	

#score	985.3529411764695
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_transcript_m2_run2.nuc.txt

#NT
UAAAAAAA	chr5:96110168-96110458(-)$1	290	50	58	18.4339
uaaaaaAA	chr12:123893036-123893303(+)$1	267	14	22	18.4339
UAUAAGAA	chr1:245006011-245006238(-)$1	227	171	179	13.9999
UAGAAAAA	chr2:55199726-55199969(-)$1	243	19	27	14.4716
uaaaaaaa	chr11:63527095-63527383(+)$1	288	244	252	18.4339
AAAAAGAA	chr5:131730986-131731298(+)$1	312	79	87	13.8113
UAAUAAAA	chr12:98929179-98929447(+)$1	268	19	27	14.1886
UAAAAAAA	chr5:150070807-150071078(-)$1	271	130	138	18.4339
UAAAUGAA	chr4:69179067-69179306(-)$1	239	92	100	13.8113
UAAUAAAA	chr17:38544685-38544932(-)$1	247	131	139	14.1886
UACAAGAA	chr5:65476417-65476644(+)$1	227	141	149	13.9056
UAAAAAAA	chr7:77269180-77269445(+)$1	265	180	188	18.4339
UAAAAGGA	chr6:160176829-160177111(+)$1	282	49	57	13.8113
UAAAUAAA	chr4:25749038-25749324(-)$1	286	243	251	14.2830
UAAAACAA	chr12:110927927-110928272(+)$1	345	142	150	16.1698
UAAAAGAU	chr7:23544953-23545221(-)$1	268	223	231	13.2452
UAGAAAAA	chr4:123283691-123283974(+)$1	283	40	48	14.4716
CAAAAAAA	chr6:125303658-125303931(+)$1	273	22	30	14.0000
UAAAAGUA	chr1:235386711-235387013(-)$1	302	79	87	13.7169
UAAAACAA	chr10:76990891-76991198(+)$1	307	297	305	16.1698
UUAAAGAA	chr1:115260132-115260374(-)$1	242	185	193	13.4339
uaaaaaaa	chr16:88584151-88584462(+)$1	311	302	310	18.4339
UAAAAGGA	chr17:56080827-56081103(-)$1	276	18	26	13.8113
UAAAACAA	chr12:123110684-123111017(+)$1	333	225	233	16.1698
UAAUAAAA	chr3:42689916-42690224(+)$1	308	89	97	14.1886
UAAAAAUA	chrM:8350-8572(+)$1	222	92	100	14.1886
aaaaagaa	chr7:158428869-158429154(-)$1	285	55	63	13.8113
UAAAGAAA	chr12:98994934-98995158(+)$1	224	72	80	13.9999
UAAAAGAA	chr1:25568854-25569127(-)$1	273	45	53	17.9622
UAAUAAAA	chr17:79845651-79845886(-)$1	235	145	153	14.1886
UAAAAGAA	chr7:86825459-86825717(+)$1	258	162	170	17.9622
UAUAAGAA	chr12:46752184-46752510(-)$1	326	119	127	13.9999
UAUAAGAA	chr4:129029788-129030067(+)$1	279	252	260	13.9999
UAAAAGAA	chr11:10818571-10818823(-)$1	252	10	18	17.9622
UAAAUAAA	chr13:107195608-107195836(-)$1	228	120	128	14.2830
UAAAAGAA	chr11:68381829-68382104(+)$1	275	214	222	17.9622
UAAAAAAA	chr12:72003581-72003843(-)$1	262	49	57	18.4339
UAAAAGGA	chr3:128888920-128889206(-)$1	286	36	44	13.8113
Uaaaaaaa	chr19:3465328-3465557(+)$1	229	62	70	18.4339
UAAAUGAA	chr3:128996380-128996635(+)$1	255	147	155	13.8113
UGAAAGAA	chr7:100278769-100279063(-)$1	294	126	134	13.3396
UAGAAAAA	chrM:10150-10366(+)$1	216	0	8	14.4716
UAAAAAAA	chr12:120532912-120533171(-)$1	259	232	240	18.4339
UAAAAUAA	chr10:126085825-126086068(-)$1	243	170	178	15.9811
UUAAAAAA	chr6:111134320-111134619(-)$1	299	69	77	13.9056
uaaaaaaa	chr17:54965603-54965884(-)$1	281	12	20	18.4339
AAAAAGAA	chr22:20098966-20099220(+)$1	254	27	35	13.8113
UAAAAGAG	chr15:34673313-34673558(-)$1	245	105	113	13.2452
UAAAAAAA	chr6:49572837-49573148(-)$1	311	36	44	18.4339
AAAAAGAA	chr1:234742314-234742589(-)$1	275	56	64	13.8113
UAAAAAAA	chr7:22897871-22898185(+)$1	314	22	30	18.4339
UACAAAAA	chr9:138824760-138825059(-)$1	299	25	33	14.3773

#otherMatches

#Struct PSSM
xxxxxxxx	chr11:43515982-43516253(+)$1	271	38	46	14.0943
::::hhhh	chr5:96110168-96110458(-)$1	290	50	58	18.4339
[eeeee!!	chr12:123893036-123893303(+)$1	267	14	22	18.4339
gg]dddd:	chr1:245006011-245006238(-)$1	227	171	179	13.9999
czzzzzzz	chr2:55199726-55199969(-)$1	243	19	27	14.4716
^^^^^^^^	chr11:63527095-63527383(+)$1	288	244	252	18.4339
::eeeee^	chr5:131730986-131731298(+)$1	312	79	87	13.8113
{HHHHHHH	chr12:98929179-98929447(+)$1	268	19	27	14.1886
::::::::	chr5:150070807-150071078(-)$1	271	130	138	18.4339
eeee:GGG	chr4:69179067-69179306(-)$1	239	92	100	13.8113
dd22hhhh	chr17:38544685-38544932(-)$1	247	131	139	14.1886
______DD	chr5:65476417-65476644(+)$1	227	141	149	13.9056
::::::::	chr7:77269180-77269445(+)$1	265	180	188	18.4339
:::::GGG	chr6:160176829-160177111(+)$1	282	49	57	13.8113
hhhhhhh:	chr4:25749038-25749324(-)$1	286	243	251	14.2830
fff:::::	chr12:110927927-110928272(+)$1	345	142	150	16.1698
###ggggg	chr7:23544953-23545221(-)$1	268	223	231	13.2452
4ggggggg	chr4:123283691-123283974(+)$1	283	40	48	14.4716
csssssss	chr6:125303658-125303931(+)$1	273	22	30	14.0000
:::::fff	chr1:235386711-235387013(-)$1	302	79	87	13.7169
____DDDD	chr10:76990891-76991198(+)$1	307	297	305	16.1698
dd]eeeee	chr1:115260132-115260374(-)$1	242	185	193	13.4339
F:::::::	chr16:88584151-88584462(+)$1	311	302	310	18.4339
mmffffff	chr17:56080827-56081103(-)$1	276	18	26	13.8113
==333bb]	chr12:123110684-123111017(+)$1	333	225	233	16.1698
::::::::	chr3:42689916-42690224(+)$1	308	89	97	14.1886
::::::::	chrM:8350-8572(+)$1	222	92	100	14.1886
::::::::	chr7:158428869-158429154(-)$1	285	55	63	13.8113
fff:::::	chr12:98994934-98995158(+)$1	224	72	80	13.9999
ee::::::	chr1:25568854-25569127(-)$1	273	45	53	17.9622
=====:::	chr17:79845651-79845886(-)$1	235	145	153	14.1886
eeoooooo	chr7:86825459-86825717(+)$1	258	162	170	17.9622
eeeeeEEE	chr12:46752184-46752510(-)$1	326	119	127	13.9999
YEEEEEZZ	chr4:129029788-129030067(+)$1	279	252	260	13.9999
$$$$$eee	chr11:10818571-10818823(-)$1	252	10	18	17.9622
F:::::::	chr13:107195608-107195836(-)$1	228	120	128	14.2830
hhhccczz	chr11:68381829-68382104(+)$1	275	214	222	17.9622
EPPPPPPP	chr12:72003581-72003843(-)$1	262	49	57	18.4339
eeee::::	chr3:128888920-128889206(-)$1	286	36	44	13.8113
^^^^^^^^	chr19:3465328-3465557(+)$1	229	62	70	18.4339
!!ddddpp	chr3:128996380-128996635(+)$1	255	147	155	13.8113
ddd::ddd	chr7:100278769-100279063(-)$1	294	126	134	13.3396
::::::::	chrM:10150-10366(+)$1	216	0	8	14.4716
55555ggg	chr12:120532912-120533171(-)$1	259	232	240	18.4339
ff::gggg	chr10:126085825-126086068(-)$1	243	170	178	15.9811
pppdddd]	chr6:111134320-111134619(-)$1	299	69	77	13.9056
::::::::	chr17:54965603-54965884(-)$1	281	12	20	18.4339
::::::::	chr22:20098966-20099220(+)$1	254	27	35	13.8113
eeeeeeee	chr15:34673313-34673558(-)$1	245	105	113	13.2452
::::::CC	chr6:49572837-49573148(-)$1	311	36	44	18.4339
::::::::	chr1:234742314-234742589(-)$1	275	56	64	13.8113
(((((((d	chr7:22897871-22898185(+)$1	314	22	30	18.4339
ccc:::::	chr9:138824760-138825059(-)$1	299	25	33	14.3773

#DB
........	chr11:43515982-43516253(+)$1	1	38	46	14.0943
....((((	chr5:96110168-96110458(-)$1	1	50	58	18.4339
.(((((..	chr12:123893036-123893303(+)$1	1	14	22	18.4339
)).)))).	chr1:245006011-245006238(-)$1	1	171	179	13.9999
(.......	chr2:55199726-55199969(-)$1	1	19	27	14.4716
........	chr11:63527095-63527383(+)$1	1	244	252	18.4339
..(((((.	chr5:131730986-131731298(+)$1	1	79	87	13.8113
.(((((((	chr12:98929179-98929447(+)$1	1	19	27	14.1886
........	chr5:150070807-150071078(-)$1	1	130	138	18.4339
)))).)))	chr4:69179067-69179306(-)$1	1	92	100	13.8113
))..))))	chr17:38544685-38544932(-)$1	1	131	139	14.1886
......))	chr5:65476417-65476644(+)$1	1	141	149	13.9056
........	chr7:77269180-77269445(+)$1	1	180	188	18.4339
.....(((	chr6:160176829-160177111(+)$1	1	49	57	13.8113
))))))).	chr4:25749038-25749324(-)$1	1	243	251	14.2830
))).....	chr12:110927927-110928272(+)$1	1	142	150	16.1698
...(((((	chr7:23544953-23545221(-)$1	1	223	231	13.2452
.)))))))	chr4:123283691-123283974(+)$1	1	40	48	14.4716
(.......	chr6:125303658-125303931(+)$1	1	22	30	14.0000
.....(((	chr1:235386711-235387013(-)$1	1	79	87	13.7169
....))))	chr10:76990891-76991198(+)$1	1	297	305	16.1698
)).)))))	chr1:115260132-115260374(-)$1	1	185	193	13.4339
).......	chr16:88584151-88584462(+)$1	1	302	310	18.4339
..))))))	chr17:56080827-56081103(-)$1	1	18	26	13.8113
))...)).	chr12:123110684-123111017(+)$1	1	225	233	16.1698
........	chr3:42689916-42690224(+)$1	1	89	97	14.1886
........	chrM:8350-8572(+)$1	1	92	100	14.1886
........	chr7:158428869-158429154(-)$1	1	55	63	13.8113
))).....	chr12:98994934-98995158(+)$1	1	72	80	13.9999
))......	chr1:25568854-25569127(-)$1	1	45	53	17.9622
)))))...	chr17:79845651-79845886(-)$1	1	145	153	14.1886
((......	chr7:86825459-86825717(+)$1	1	162	170	17.9622
)))))(((	chr12:46752184-46752510(-)$1	1	119	127	13.9999
.)))))..	chr4:129029788-129030067(+)$1	1	252	260	13.9999
.....(((	chr11:10818571-10818823(-)$1	1	10	18	17.9622
).......	chr13:107195608-107195836(-)$1	1	120	128	14.2830
((((((..	chr11:68381829-68382104(+)$1	1	214	222	17.9622
(.......	chr12:72003581-72003843(-)$1	1	49	57	18.4339
))))....	chr3:128888920-128889206(-)$1	1	36	44	13.8113
........	chr19:3465328-3465557(+)$1	1	62	70	18.4339
..((((..	chr3:128996380-128996635(+)$1	1	147	155	13.8113
)))..(((	chr7:100278769-100279063(-)$1	1	126	134	13.3396
........	chrM:10150-10366(+)$1	1	0	8	14.4716
.....)))	chr12:120532912-120533171(-)$1	1	232	240	18.4339
))..((((	chr10:126085825-126086068(-)$1	1	170	178	15.9811
...)))).	chr6:111134320-111134619(-)$1	1	69	77	13.9056
........	chr17:54965603-54965884(-)$1	1	12	20	18.4339
........	chr22:20098966-20099220(+)$1	1	27	35	13.8113
))))((((	chr15:34673313-34673558(-)$1	1	105	113	13.2452
......((	chr6:49572837-49573148(-)$1	1	36	44	18.4339
........	chr1:234742314-234742589(-)$1	1	56	64	13.8113
.......(	chr7:22897871-22898185(+)$1	1	22	30	18.4339
))).....	chr9:138824760-138825059(-)$1	1	25	33	14.3773

#PSSM
U : 0.83	u : 0.07	A : 0.05	C : 0.01	a : 0.01	
A : 0.83	a : 0.11	U : 0.03	G : 0.01	
A : 0.73	a : 0.11	U : 0.05	G : 0.05	C : 0.03	
A : 0.81	a : 0.11	U : 0.07	
A : 0.79	a : 0.11	U : 0.07	G : 0.01	
A : 0.41	G : 0.39	a : 0.09	C : 0.05	g : 0.01	U : 0.01	
A : 0.79	a : 0.09	G : 0.05	U : 0.03	C : 0.01	
A : 0.86	a : 0.09	U : 0.01	G : 0.01	

#score	818.0377358490568
#seq	53
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_UTR_m1_run1.nuc.txt

#NT
CGCGGCGGAGGGGGCG	chr8:17941466-17941707(-)$1	241	50	66	26.7499
ggcggggggggCCGCG	chr19:40791074-40791368(-)$1	294	101	117	27.3181
agcggcggcggcggca	chr20:34329892-34330139(-)$1	247	193	209	30.3863
GGCGGCCCCGGCGGAG	chr10:103113735-103113996(+)$1	261	161	177	26.1818
ggcggcggcggcggcg	chr21:38445482-38445750(+)$1	268	114	130	38.4545
GUCAGAGGCGGCGGCG	chr10:129924495-129924745(-)$1	250	174	190	26.1818
GGCGGAGGCGGGGGUG	chr2:118845958-118846225(+)$1	267	146	162	27.5454
ggcgacggcggcggag	chr8:30669827-30670092(-)$1	265	38	54	30.4999
GGCGGCGGCGGAGGAG	chr1:180601056-180601316(+)$1	260	149	165	31.0681
GGCGGCGGCGGCCGAG	chr2:70056769-70057064(+)$1	295	183	199	31.0681
agcggcggcggcggcg	chr7:44887469-44887718(-)$1	249	76	92	34.4772
GGCGGCAGCGGCGGCG	chr14:96968695-96968950(+)$1	255	175	191	34.1363
ggcggcggcggcggcg	chr5:133707153-133707365(+)$1	212	12	28	38.4545
ggcgucggcugcggcg	chr16:2587900-2588217(+)$1	317	12	28	29.9318
GGCGGAGGAGGGGGAG	chr2:20550296-20550592(-)$1	296	144	160	24.2499
GGCGGCGGGGGCGGGG	chr18:43678109-43678357(-)$1	248	3	19	31.0681
ggcggcggcggcggcg	chr7:99686488-99686804(+)$1	316	127	143	38.4545
GGCGGCUGAGCCGGCG	chr1:46269162-46269470(+)$1	308	128	144	25.7272
GGCGGCGACGGUGGCG	chr22:38902133-38902411(-)$1	278	228	244	30.2727
ggcugcggcugcggcu	chr5:159848809-159849081(+)$1	272	149	165	26.2954
AGCGGCGGCAGCGGCU	chr7:26240257-26240499(-)$1	242	109	125	26.2954
GGCGGGGACCGCGGCG	chr15:91445771-91446030(+)$1	259	104	120	26.5227
ggcggcggcggcAGCG	chr19:572481-572715(+)$1	234	102	118	34.3636
ggcggcggcggcggcg	chr19:39833023-39833277(+)$1	254	60	76	38.4545
ggcggcggaggcggcg	chr6:34664393-34664666(-)$1	273	64	80	34.9318
GGGGGCAGCCGCGGCG	chr12:53574431-53574710(+)$1	279	96	112	26.0681
ggcggcggcggcguug	chr4:129208779-129209059(-)$1	280	233	249	30.0454
ggcugcggcggcggcg	chr19:6739607-6739900(+)$1	293	138	154	34.2499
GGCGGAGGCGGCCGCC	chr2:139259405-139259702(+)$1	297	140	156	26.8636
GGUGGCGGCGGCGGCG	chr7:102119210-102119445(-)$1	235	87	103	34.5909
GGCGGCGGCGGCGGCU	chr13:115000302-115000568(+)$1	266	147	163	34.4772
GGCCGAGGCGGCGGUG	chr4:78078369-78078626(+)$1	257	129	145	27.0909
gccgggggcggcggcg	chr15:64752849-64753145(+)$1	296	278	294	30.1590
GGAGGUGGUGGCGGCG	chr21:27107062-27107334(-)$1	272	124	140	26.7499
ggcggcggcugcagcg	chr3:33481582-33481853(-)$1	271	208	224	30.3863
ggagccgggggcggcg	chr9:101558621-101558914(-)$1	293	227	243	26.4090
GGCGGCGGGGGAGGCG	chr7:140098119-140098410(-)$1	291	110	126	30.9545
AGCGGCGGCGGCGGCG	chr4:56262028-56262277(+)$1	249	213	229	34.4772
ggcggcggcggcggcg	chr7:77166501-77166742(+)$1	241	19	35	38.4545
gguggcggcggcggcg	chr22:19419049-19419362(-)$1	313	154	170	34.5909
ggcagcggcggcggcg	chr16:1756145-1756394(+)$1	249	56	72	34.2499
gguggcggcggcugcg	chr4:174089817-174090082(+)$1	265	121	137	30.3863
GGCGGCGACGGUGGCG	chr22:38902069-38902317(-)$1	248	134	150	30.2727

#otherMatches

#Struct PSSM
g"""ffffff[a[bb!	chr10:101379907-101380260(-)$1	353	105	121	30.3863
===!!ammmma22===	chr8:17941466-17941707(-)$1	241	50	66	26.7499
[ddddoooooodddd]	chr19:40791074-40791368(-)$1	294	101	117	27.3181
EEEEE}IIIIIIIIIY	chr20:34329892-34330139(-)$1	247	193	209	30.3863
dddd]bbCCCCCC}BB	chr10:103113735-103113996(+)$1	261	161	177	26.1818
HHH=============	chr21:38445482-38445750(+)$1	268	114	130	38.4545
ii$$$$$bbmmmmbb7	chr10:129924495-129924745(-)$1	250	174	190	26.1818
[ccc!!a[a[a[a[a!	chr2:118845958-118846225(+)$1	267	146	162	27.5454
e[a!!ddddccc"""c	chr8:30669827-30670092(-)$1	265	38	54	30.4999
hhhh[eeeee!!bb[a	chr1:180601056-180601316(+)$1	260	149	165	31.0681
e[allla]eeeee:::	chr2:70056769-70057064(+)$1	295	183	199	31.0681
mffffff]dddd]bb:	chr7:44887469-44887718(-)$1	249	76	92	34.4772
DDD}BB}BB}FFFFFF	chr14:96968695-96968950(+)$1	255	175	191	34.1363
DDDDbb[bbmmmmbb]	chr5:133707153-133707365(+)$1	212	12	28	38.4545
KKACCC{EEEEE{EEE	chr16:2587900-2588217(+)$1	317	12	28	29.9318
dddd!!a!!bb[bbmm	chr2:20550296-20550592(-)$1	296	144	160	24.2499
C{DDDDKKBBBBdddd	chr18:43678109-43678357(-)$1	248	3	19	31.0681
]ffffffeeeeecccd	chr7:99686488-99686804(+)$1	316	127	143	38.4545
offffff]dddd22dd	chr1:46269162-46269470(+)$1	308	128	144	25.7272
ffffCCCGGGGGGG}A	chr22:38902133-38902411(-)$1	278	228	244	30.2727
dddd[ddddmmmmddd	chr5:159848809-159849081(+)$1	272	149	165	26.2954
:bb[bb[bbiiiiiii	chr7:26240257-26240499(-)$1	242	109	125	26.2954
ggggggg"""dddd[c	chr15:91445771-91446030(+)$1	259	104	120	26.5227
nnnneeeee]bbeeee	chr19:572481-572715(+)$1	234	102	118	34.3636
ff]ccc]bb::a[ccc	chr19:39833023-39833277(+)$1	254	60	76	38.4545
KBB{BB{A{A{BB{CC	chr6:34664393-34664666(-)$1	273	64	80	34.9318
C{DDDD{BB{DDDDAK	chr12:53574431-53574710(+)$1	279	96	112	26.0681
nnnnndddd22eeeee	chr4:129208779-129209059(-)$1	280	233	249	30.0454
:eeeeemmmmeeeeef	chr19:6739607-6739900(+)$1	293	138	154	34.2499
eeeeeooooooeeeee	chr2:139259405-139259702(+)$1	297	140	156	26.8636
22cccffffff]iiii	chr7:102119210-102119445(-)$1	235	87	103	34.5909
}CCC::GGGGGGGeee	chr13:115000302-115000568(+)$1	266	147	163	34.4772
dddd22ccc22a]bb]	chr4:78078369-78078626(+)$1	257	129	145	27.0909
ffffeeeee]bb]bb:	chr15:64752849-64753145(+)$1	296	278	294	30.1590
JJJJJJJJJ}EEEEE}	chr21:27107062-27107334(-)$1	272	124	140	26.7499
dddmmmmdddd]a]dd	chr3:33481582-33481853(-)$1	271	208	224	30.3863
fff============3	chr9:101558621-101558914(-)$1	293	227	243	26.4090
eee:FFFFFF}A}BBC	chr7:140098119-140098410(-)$1	291	110	126	30.9545
~~GGGGGGG:ffffff	chr4:56262028-56262277(+)$1	249	213	229	34.4772
LBB{BBIIIIIIIII{	chr7:77166501-77166742(+)$1	241	19	35	38.4545
ccc]ffffffccc]a]	chr22:19419049-19419362(-)$1	313	154	170	34.5909
eee!!eeeee[bb[a[	chr16:1756145-1756394(+)$1	249	56	72	34.2499
eee!!eeeeemmmmee	chr4:174089817-174090082(+)$1	265	121	137	30.3863
[bb[bbmmmmbb]bb]	chr22:38902069-38902317(-)$1	248	134	150	30.2727

#DB
(...((((((.(.((.	chr10:101379907-101380260(-)$1	1	105	121	30.3863
(((..(....)..)))	chr8:17941466-17941707(-)$1	1	50	66	26.7499
.((((......)))).	chr19:40791074-40791368(-)$1	1	101	117	27.3181
))))).))))))))).	chr20:34329892-34330139(-)$1	1	193	209	30.3863
)))).)))))))).))	chr10:103113735-103113996(+)$1	1	161	177	26.1818
((((((((((((((((	chr21:38445482-38445750(+)$1	1	114	130	38.4545
((.....((....)).	chr10:129924495-129924745(-)$1	1	174	190	26.1818
.(((..(.(.(.(.(.	chr2:118845958-118846225(+)$1	1	146	162	27.5454
(.(..(((((((...(	chr8:30669827-30670092(-)$1	1	38	54	30.4999
((((.(((((..((.(	chr1:180601056-180601316(+)$1	1	149	165	31.0681
(.(...).)))))...	chr2:70056769-70057064(+)$1	1	183	199	31.0681
.)))))).)))).)).	chr7:44887469-44887718(-)$1	1	76	92	34.4772
))).)).)).))))))	chr14:96968695-96968950(+)$1	1	175	191	34.1363
((((((.((....)).	chr5:133707153-133707365(+)$1	1	12	28	38.4545
..((((.(((((.(((	chr16:2587900-2588217(+)$1	1	12	28	29.9318
((((..(..((.((..	chr2:20550296-20550592(-)$1	1	144	160	24.2499
(.((((..((((((((	chr18:43678109-43678357(-)$1	1	3	19	31.0681
.)))))))))))))))	chr7:99686488-99686804(+)$1	1	127	143	38.4545
.)))))).))))..))	chr1:46269162-46269470(+)$1	1	128	144	25.7272
)))))))))))))).)	chr22:38902133-38902411(-)$1	1	228	244	30.2727
((((.((((....)))	chr5:159848809-159849081(+)$1	1	149	165	26.2954
.((.((.(((((((((	chr7:26240257-26240499(-)$1	1	109	125	26.2954
(((((((...((((.(	chr15:91445771-91446030(+)$1	1	104	120	26.5227
....))))).))))))	chr19:572481-572715(+)$1	1	102	118	34.3636
)).))).))..(.(((	chr19:39833023-39833277(+)$1	1	60	76	38.4545
.((.((.(.(.((.((	chr6:34664393-34664666(-)$1	1	64	80	34.9318
(.((((.((.(((((.	chr12:53574431-53574710(+)$1	1	96	112	26.0681
.....))))..)))))	chr4:129208779-129209059(-)$1	1	233	249	30.0454
.(((((....)))))(	chr19:6739607-6739900(+)$1	1	138	154	34.2499
(((((......)))))	chr2:139259405-139259702(+)$1	1	140	156	26.8636
..))))))))).))))	chr7:102119210-102119445(-)$1	1	87	103	34.5909
.)))..((((((((((	chr13:115000302-115000568(+)$1	1	147	163	34.4772
))))..)))..).)).	chr4:78078369-78078626(+)$1	1	129	145	27.0909
))))))))).)).)).	chr15:64752849-64753145(+)$1	1	278	294	30.1590
))))))))).))))).	chr21:27107062-27107334(-)$1	1	124	140	26.7499
(((....)))).).))	chr3:33481582-33481853(-)$1	1	208	224	30.3863
))))))))))))))).	chr9:101558621-101558914(-)$1	1	227	243	26.4090
))).)))))).).)))	chr7:140098119-140098410(-)$1	1	110	126	30.9545
..))))))).((((((	chr4:56262028-56262277(+)$1	1	213	229	34.4772
.((.(((((((((((.	chr7:77166501-77166742(+)$1	1	19	35	38.4545
))).))))))))).).	chr22:19419049-19419362(-)$1	1	154	170	34.5909
(((..(((((.((.(.	chr16:1756145-1756394(+)$1	1	56	72	34.2499
(((..(((((....))	chr4:174089817-174090082(+)$1	1	121	137	30.3863
.((.((....)).)).	chr22:38902069-38902317(-)$1	1	134	150	30.2727

#PSSM
G : 0.45	g : 0.43	a : 0.04	A : 0.04	C : 0.02	
G : 0.49	g : 0.45	U : 0.02	c : 0.02	
C : 0.43	c : 0.40	G : 0.04	u : 0.04	U : 0.02	A : 0.02	a : 0.02	
G : 0.45	g : 0.43	u : 0.04	A : 0.02	C : 0.02	a : 0.02	
G : 0.49	g : 0.43	a : 0.02	u : 0.02	c : 0.02	
c : 0.45	C : 0.34	A : 0.11	g : 0.04	G : 0.02	U : 0.02	
g : 0.49	G : 0.40	A : 0.04	C : 0.02	U : 0.02	
g : 0.49	G : 0.40	A : 0.06	C : 0.02	
c : 0.43	C : 0.36	A : 0.06	g : 0.04	G : 0.04	a : 0.02	U : 0.02	
g : 0.43	G : 0.43	u : 0.06	C : 0.04	A : 0.02	
g : 0.49	G : 0.47	C : 0.02	
c : 0.47	C : 0.36	G : 0.06	A : 0.04	U : 0.04	
G : 0.45	g : 0.40	C : 0.06	A : 0.02	a : 0.02	u : 0.02	
G : 0.54	g : 0.43	u : 0.02	
c : 0.40	C : 0.38	A : 0.09	U : 0.04	a : 0.02	G : 0.02	u : 0.02	
G : 0.47	g : 0.38	a : 0.04	U : 0.04	u : 0.02	C : 0.02	

#score	1359.9545454545446
#seq	44
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_UTR_m1_run2.nuc.txt

#NT
GCCCACCCC	chr12:132568987-132569331(+)$1	344	121	130	19.4193
CCCCACCCC	chr19:56206740-56207071(+)$1	331	72	81	23.6935
CCCCACCCC	chr19:49843280-49843593(+)$1	313	135	144	23.6935
cuccacccc	chr22:50683527-50683913(-)$1	386	143	152	19.3387
ccccagccc	chr6:43472867-43473148(+)$1	281	164	173	19.7419
CCCCAUCCC	chr12:56634793-56635055(-)$1	262	190	199	19.9838
CCCCACCCC	chr13:114538807-114539095(-)$1	288	212	221	23.6935
ccccaccca	chr22:50687477-50687753(-)$1	276	20	29	19.8225
CCCCACCCU	chr19:18642737-18643010(-)$1	273	254	263	19.6612
CCCCACCCC	chr1:32661882-32662126(+)$1	244	57	66	23.6935
CCCCGCCCC	chr19:50372868-50373161(-)$1	293	39	48	19.8225
CCCCAUCcc	chr12:16035301-16035603(+)$1	302	86	95	19.9838
CCCCUCCCC	chr12:56636210-56636483(-)$1	273	55	64	20.2258
CCCCACCCA	chr21:36161362-36161714(-)$1	352	178	187	19.8225
CCCCACCCA	chr3:47451631-47451872(+)$1	241	50	59	19.8225
CCCCACCCC	chr16:450257-450508(+)$1	251	205	214	23.6935
CCCCACCCC	chr3:183888816-183889106(+)$1	290	153	162	23.6935
CCCCACCCC	chr12:54763865-54764161(-)$1	296	236	245	23.6935
CCCCACCCC	chr12:56506597-56506914(+)$1	317	197	206	23.6935
ccccacccc	chr6:29595637-29595957(-)$1	320	73	82	23.6935
CCCCAUCCC	chr22:43015296-43015635(-)$1	339	108	117	19.9838
UCCCACCCC	chr17:47788449-47788695(-)$1	246	82	91	19.4193
CCCCAUCCC	chr19:54971457-54971715(+)$1	258	152	161	19.9838
CCCCAACCC	chr7:100075625-100075945(-)$1	320	238	247	19.5806
CCCCACCCC	chr11:64895414-64895657(-)$1	243	101	110	23.6935
GCCCACCCC	chr1:154242878-154243130(+)$1	252	12	21	19.4193
CCCCAUCCC	chr12:132569338-132569645(+)$1	307	18	27	19.9838
CCCCUCCCC	chr1:153700492-153700764(+)$1	272	16	25	20.2258
CCCCACCCC	chr19:13064115-13064463(+)$1	348	276	285	23.6935
CCCCAGCCC	chr19:41858906-41859199(-)$1	293	166	175	19.7419
ccccgcccc	chr17:7308542-7308911(+)$1	369	215	224	19.8225
cuccacccc	chr16:188095-188426(-)$1	331	9	18	19.3387
CCUCACCCC	chr7:100172518-100172836(-)$1	318	125	134	18.8548
ccccauccc	chr2:172016831-172017099(-)$1	268	18	27	19.9838
CCCCACCCC	chr12:6715716-6715994(-)$1	278	10	19	23.6935
CCCCUCCCC	chr1:36805916-36806251(-)$1	335	79	88	20.2258
CCCCACCCC	chr1:153779084-153779347(-)$1	263	101	110	23.6935
CCCCAGCCC	chr22:19754410-19754674(+)$1	264	75	84	19.7419
CCCCUCCCC	chr16:2871031-2871326(+)$1	295	277	286	20.2258
CCCCACCCC	chr16:81744149-81744446(+)$1	297	285	294	23.6935
UCCCACCCC	chr17:47788594-47788885(-)$1	291	272	281	19.4193
CCCCACCCU	chr12:48188998-48189346(-)$1	348	108	117	19.6612
CCCCACCCG	chr18:34376603-34376903(-)$1	300	120	129	19.4999
ccccucccc	chr15:91504947-91505271(+)$1	324	142	151	20.2258
GCCCACCCC	chr11:64895223-64895488(-)$1	265	77	86	19.4193
CCCCACCCC	chr17:17723302-17723584(-)$1	282	59	68	23.6935
CCCCACCCC	chr7:139044822-139045125(+)$1	303	149	158	23.6935
CCCCACCCC	chr6:32160157-32160445(-)$1	288	54	63	23.6935
cuccacccc	chr12:53845976-53846223(+)$1	247	45	54	19.3387
CUCCACCCC	chr3:9975721-9976032(+)$1	311	163	172	19.3387
CCCCACCCC	chr19:3467194-3467517(+)$1	323	23	32	23.6935
CCCCACCCC	chr16:30681691-30681986(+)$1	295	34	43	23.6935
CCCCUCCCC	chr17:7308376-7308667(+)$1	291	81	90	20.2258
CCCCACCCU	chr12:58019401-58019708(-)$1	307	101	110	19.6612
CCCCUCCCC	chr17:47132622-47132943(+)$1	321	176	185	20.2258
CCCCUCCCC	chr1:111991350-111991746(-)$1	396	119	128	20.2258
CCCCACCCC	chr19:14203536-14203813(-)$1	277	8	17	23.6935
CCCCACCCA	chr3:14529762-14530116(+)$1	354	160	169	19.8225
CCCCACCCA	chr3:9975832-9976127(+)$1	295	114	123	19.8225
CCCCACCCC	chr16:81744350-81744652(+)$1	302	84	93	23.6935
ccccgcccc	chr6:36164608-36164928(-)$1	320	139	148	19.8225

#otherMatches

#Struct PSSM
ccc::::DD	chr19:4045298-4045582(-)$1	284	88	97	19.4193
b]bb77777	chr12:132568987-132569331(+)$1	344	121	130	19.4193
pppppffff	chr19:56206740-56207071(+)$1	331	72	81	23.6935
cggggggg[	chr19:49843280-49843593(+)$1	313	135	144	23.6935
:::::::::	chr22:50683527-50683913(-)$1	386	143	152	19.3387
qqqqqdddd	chr6:43472867-43473148(+)$1	281	164	173	19.7419
xxxxxxxxx	chr12:56634793-56635055(-)$1	262	190	199	19.9838
ffff:::::	chr13:114538807-114539095(-)$1	288	212	221	23.6935
HHHH{DDDD	chr22:50687477-50687753(-)$1	276	20	29	19.8225
eeee]eeee	chr19:18642737-18643010(-)$1	273	254	263	19.6612
7777777dd	chr1:32661882-32662126(+)$1	244	57	66	23.6935
####eeeee	chr19:50372868-50373161(-)$1	293	39	48	19.8225
:::::::::	chr12:16035301-16035603(+)$1	302	86	95	19.9838
pppppaeee	chr12:56636210-56636483(-)$1	273	55	64	20.2258
:::::EEEE	chr21:36161362-36161714(-)$1	352	178	187	19.8225
fff%%%%%%	chr3:47451631-47451872(+)$1	241	50	59	19.8225
!!apppppp	chr16:450257-450508(+)$1	251	205	214	23.6935
:::::::::	chr3:183888816-183889106(+)$1	290	153	162	23.6935
++++fffff	chr12:54763865-54764161(-)$1	296	236	245	23.6935
\FFFFFF}C	chr12:56506597-56506914(+)$1	317	197	206	23.6935
WWWWWWWWW	chr6:29595637-29595957(-)$1	320	73	82	23.6935
333bb4444	chr22:43015296-43015635(-)$1	339	108	117	19.9838
IIIIKKBB{	chr17:47788449-47788695(-)$1	246	82	91	19.4193
55bb]iiii	chr19:54971457-54971715(+)$1	258	152	161	19.9838
cc]bb>>>>	chr7:100075625-100075945(-)$1	320	238	247	19.5806
xxxxxxxxx	chr11:64895414-64895657(-)$1	243	101	110	23.6935
FFFFFOOOO	chr1:154242878-154243130(+)$1	252	12	21	19.4193
:::::BB{D	chr12:132569338-132569645(+)$1	307	18	27	19.9838
EEEEE::BB	chr1:153700492-153700764(+)$1	272	16	25	20.2258
::::::::b	chr19:13064115-13064463(+)$1	348	276	285	23.6935
ddd!!eeee	chr19:41858906-41859199(-)$1	293	166	175	19.7419
cc[eeeee!	chr17:7308542-7308911(+)$1	369	215	224	19.8225
FFFF:GGGG	chr16:188095-188426(-)$1	331	9	18	19.3387
7777dddd:	chr7:100172518-100172836(-)$1	318	125	134	18.8548
b::::::::	chr2:172016831-172017099(-)$1	268	18	27	19.9838
:::::::::	chr12:6715716-6715994(-)$1	278	10	19	23.6935
a22ccc::G	chr1:36805916-36806251(-)$1	335	79	88	20.2258
::::::::b	chr1:153779084-153779347(-)$1	263	101	110	23.6935
MMMMEEEEE	chr22:19754410-19754674(+)$1	264	75	84	19.7419
baeeeeecc	chr16:2871031-2871326(+)$1	295	277	286	20.2258
D::::::::	chr16:81744149-81744446(+)$1	297	285	294	23.6935
ooooooddd	chr17:47788594-47788885(-)$1	291	272	281	19.4193
mmccc::::	chr12:48188998-48189346(-)$1	348	108	117	19.6612
hhdddda[c	chr18:34376603-34376903(-)$1	300	120	129	19.4999
ddd:DDDDA	chr15:91504947-91505271(+)$1	324	142	151	20.2258
33ccceeee	chr11:64895223-64895488(-)$1	265	77	86	19.4193
IIIIIIIII	chr17:17723302-17723584(-)$1	282	59	68	23.6935
rrrrrrrrr	chr7:139044822-139045125(+)$1	303	149	158	23.6935
FCCCKKAKK	chr6:32160157-32160445(-)$1	288	54	63	23.6935
:::::::::	chr12:53845976-53846223(+)$1	247	45	54	19.3387
:::::::::	chr3:9975721-9976032(+)$1	311	163	172	19.3387
:CCC:ffff	chr19:3467194-3467517(+)$1	323	23	32	23.6935
EHHHHHHHH	chr16:30681691-30681986(+)$1	295	34	43	23.6935
+++++++++	chr17:7308376-7308667(+)$1	291	81	90	20.2258
^^^^^^^^^	chr12:58019401-58019708(-)$1	307	101	110	19.6612
:::::::::	chr17:47132622-47132943(+)$1	321	176	185	20.2258
'''''''ac	chr1:111991350-111991746(-)$1	396	119	128	20.2258
:::::::::	chr19:14203536-14203813(-)$1	277	8	17	23.6935
ccc:fffff	chr3:14529762-14530116(+)$1	354	160	169	19.8225
dd:::::::	chr3:9975832-9976127(+)$1	295	114	123	19.8225
fffqqqqqq	chr16:81744350-81744652(+)$1	302	84	93	23.6935
:::::::::	chr6:36164608-36164928(-)$1	320	139	148	19.8225

#DB
)))....((	chr19:4045298-4045582(-)$1	1	88	97	19.4193
).)).....	chr12:132568987-132569331(+)$1	1	121	130	19.4193
.....))))	chr19:56206740-56207071(+)$1	1	72	81	23.6935
)(((((((.	chr19:49843280-49843593(+)$1	1	135	144	23.6935
.........	chr22:50683527-50683913(-)$1	1	143	152	19.3387
.....))))	chr6:43472867-43473148(+)$1	1	164	173	19.7419
.........	chr12:56634793-56635055(-)$1	1	190	199	19.9838
)))).....	chr13:114538807-114539095(-)$1	1	212	221	23.6935
((((.((((	chr22:50687477-50687753(-)$1	1	20	29	19.8225
)))).))))	chr19:18642737-18643010(-)$1	1	254	263	19.6612
.......))	chr1:32661882-32662126(+)$1	1	57	66	23.6935
....(((((	chr19:50372868-50373161(-)$1	1	39	48	19.8225
.........	chr12:16035301-16035603(+)$1	1	86	95	19.9838
.....))))	chr12:56636210-56636483(-)$1	1	55	64	20.2258
.....((((	chr21:36161362-36161714(-)$1	1	178	187	19.8225
(((......	chr3:47451631-47451872(+)$1	1	50	59	19.8225
..(......	chr16:450257-450508(+)$1	1	205	214	23.6935
.........	chr3:183888816-183889106(+)$1	1	153	162	23.6935
....(((((	chr12:54763865-54764161(-)$1	1	236	245	23.6935
.)))))).)	chr12:56506597-56506914(+)$1	1	197	206	23.6935
.........	chr6:29595637-29595957(-)$1	1	73	82	23.6935
...))....	chr22:43015296-43015635(-)$1	1	108	117	19.9838
((((..((.	chr17:47788449-47788695(-)$1	1	82	91	19.4193
..)).))))	chr19:54971457-54971715(+)$1	1	152	161	19.9838
)).))....	chr7:100075625-100075945(-)$1	1	238	247	19.5806
.........	chr11:64895414-64895657(-)$1	1	101	110	23.6935
(((((....	chr1:154242878-154243130(+)$1	1	12	21	19.4193
.....((.(	chr12:132569338-132569645(+)$1	1	18	27	19.9838
(((((..((	chr1:153700492-153700764(+)$1	1	16	25	20.2258
........(	chr19:13064115-13064463(+)$1	1	276	285	23.6935
(((..((((	chr19:41858906-41859199(-)$1	1	166	175	19.7419
((.(((((.	chr17:7308542-7308911(+)$1	1	215	224	19.8225
((((.((((	chr16:188095-188426(-)$1	1	9	18	19.3387
....)))).	chr7:100172518-100172836(-)$1	1	125	134	18.8548
)........	chr2:172016831-172017099(-)$1	1	18	27	19.9838
.........	chr12:6715716-6715994(-)$1	1	10	19	23.6935
)..)))..(	chr1:36805916-36806251(-)$1	1	79	88	20.2258
........(	chr1:153779084-153779347(-)$1	1	101	110	23.6935
....(((((	chr22:19754410-19754674(+)$1	1	75	84	19.7419
)))))))))	chr16:2871031-2871326(+)$1	1	277	286	20.2258
)........	chr16:81744149-81744446(+)$1	1	285	294	23.6935
......)))	chr17:47788594-47788885(-)$1	1	272	281	19.4193
..)))....	chr12:48188998-48189346(-)$1	1	108	117	19.6612
(((((((.(	chr18:34376603-34376903(-)$1	1	120	129	19.4999
))).)))))	chr15:91504947-91505271(+)$1	1	142	151	20.2258
..)))))))	chr11:64895223-64895488(-)$1	1	77	86	19.4193
(((((((((	chr17:17723302-17723584(-)$1	1	59	68	23.6935
.........	chr7:139044822-139045125(+)$1	1	149	158	23.6935
((((..(..	chr6:32160157-32160445(-)$1	1	54	63	23.6935
.........	chr12:53845976-53846223(+)$1	1	45	54	19.3387
.........	chr3:9975721-9976032(+)$1	1	163	172	19.3387
.(((.((((	chr19:3467194-3467517(+)$1	1	23	32	23.6935
(((((((((	chr16:30681691-30681986(+)$1	1	34	43	23.6935
.........	chr17:7308376-7308667(+)$1	1	81	90	20.2258
.........	chr12:58019401-58019708(-)$1	1	101	110	19.6612
.........	chr17:47132622-47132943(+)$1	1	176	185	20.2258
.......((	chr1:111991350-111991746(-)$1	1	119	128	20.2258
.........	chr19:14203536-14203813(-)$1	1	8	17	23.6935
))).(((((	chr3:14529762-14530116(+)$1	1	160	169	19.8225
)).......	chr3:9975832-9976127(+)$1	1	114	123	19.8225
(((......	chr16:81744350-81744652(+)$1	1	84	93	23.6935
.........	chr6:36164608-36164928(-)$1	1	139	148	19.8225

#PSSM
C : 0.74	c : 0.16	U : 0.04	G : 0.04	
C : 0.82	c : 0.11	u : 0.04	U : 0.01	
C : 0.82	c : 0.16	U : 0.01	
C : 0.83	c : 0.16	
A : 0.70	a : 0.11	U : 0.11	g : 0.03	G : 0.01	u : 0.01	
C : 0.70	c : 0.12	U : 0.08	G : 0.03	g : 0.01	A : 0.01	u : 0.01	
C : 0.83	c : 0.16	
C : 0.82	c : 0.17	
C : 0.69	c : 0.16	A : 0.06	U : 0.04	a : 0.01	G : 0.01	

#score	1307.8709677419345
#seq	62
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_CDS_m1_run2.nuc.txt

#NT
cuccuccuccuccuccuccucuucuuccucc	chr16:2819116-2819378(+)$1	262	4	35	50.0000
CUGccccaccuccacccccgcccccaccccc	chr7:98507765-98508022(+)$1	257	73	104	35.2499
cgcugcccccaccgccgcccccacccccucc	chr12:122252175-122252455(+)$1	280	68	99	34.7500
cuccccaccgccgcgcucccccccgcccucc	chr7:72396140-72396403(+)$1	263	52	83	26.6249
caccuccuucuccucucccggcuccucgacc	chr5:137803355-137803620(+)$1	265	195	226	33.1249
CCCACCCACCCCCAACCCCCCACCAUCCUCC	chr16:2011593-2011846(+)$1	253	52	83	28.1249
CUCUUCAUCCUCAUCCCCUUCCACGCCCUCU	chr3:63981335-63981628(+)$1	293	103	134	28.6249
cucccucuccuccuucuccuccuccuGGCCC	chr3:48732247-48732536(-)$1	289	132	163	34.3749
cuucuccucccccuccuucacagauuccucc	chr16:30748737-30749012(+)$1	275	71	102	33.1249
CACCUCCUCCUAUCCCUGCACCCCUCCCUCC	chr2:204305424-204305667(-)$1	243	48	79	33.1249
UUCCACCCUCUCCCCCUACCCCUCCUGUUCC	chr2:204305292-204305543(-)$1	251	101	132	29.3749
CAccucccccucccccgccgccuccuccucc	chr16:30976922-30977165(+)$1	243	96	127	46.5000
CGCCCCCUCCUCCGCUUCCCCCCACGCCUCC	chr16:72821214-72821460(-)$1	246	94	125	36.6249
CUCUUCUUCCCCGACUUCUUCCUCAUCUUCC	chr8:9413721-9413994(+)$1	273	120	151	29.2499
cccuucccccuccuccccaggcuccaccucc	chr2:69472328-69472583(+)$1	255	209	240	35.9999
CCCCUCcccccccuccuucccucccuccuuc	chr1:109235061-109235337(+)$1	276	108	139	37.3749
cuccucuuccaguucuuccuccucuuccucu	chr12:7045543-7045756(+)$1	213	41	72	32.9999
cuccuccuccuccuccuccuccuccuccucc	chr19:15536458-15536727(-)$1	269	5	36	56.0000
CUCCGGCCCGGCCUCCCCCUCCUCCCCCGGC	chr2:55276859-55277169(-)$1	310	148	179	29.1249
cugucccagccccaccaccaccaccuccacc	chr2:204304938-204305190(-)$1	252	78	109	28.7499
CUCGUCGGUCCCCUCCUCCGCCCCGUCGUCC	chr7:105752512-105752839(-)$1	327	125	156	31.9999
cuccuccuccuccuccuccuccuccuccucc	chr5:140953321-140953625(-)$1	304	31	62	56.0000
cgcccccgccaccugugccuccucccccagc	chr14:99976736-99976991(+)$1	255	84	115	27.7499
cuccuccuccuccuccuccuccuccuccucc	chr5:140953535-140953790(-)$1	255	196	227	56.0000
cuccuccuccuccuccuccuccuccuccucc	chr5:140953425-140953644(-)$1	219	50	81	56.0000
GUCCUACACCUCCUCCUCUCCCAUCUCCUCU	chr16:58620293-58620551(-)$1	258	3	34	30.7499
cucuuccccuccucccgccccguccuccuuc	chr1:245133935-245134253(+)$1	318	121	152	30.3749
CCUCUCCAGCAACACCACCGCCACCACCUCC	chr1:17312459-17312746(-)$1	287	91	122	28.0000
CUCCUCCUCCGCAUCUUCCUGGACCACCUCC	chr12:69652518-69652786(+)$1	268	169	200	35.7499
cuccuuccuucccuccucccucccugccucc	chr5:176917466-176917785(-)$1	319	108	139	31.1249
cucauccuccuccuccuccuccucuuccucc	chr7:5352418-5352642(-)$1	224	91	122	50.1250
UUccaccacccccucccccuccuccaccccc	chr2:204305564-204305820(-)$1	256	33	64	38.6250
CAccuccuccucccccuccuccuccuccucc	chr1:27736223-27736501(-)$1	278	145	176	51.8750
Uuccuccuccacuuccuccaccuccuccucc	chr2:102487936-102488239(+)$1	303	111	142	45.7500
CGCCACCUGCCCCUCUCCUUCCUCUCCUCCC	chr22:42301416-42301665(+)$1	249	86	117	26.1249
CAGcugcucccccucauccccuucacccucc	chr19:14203526-14203821(-)$1	295	80	111	32.7499
ccucuccucccaucccucccucuucaccucc	chr19:5786773-5787107(-)$1	334	101	132	29.1249
CACCUCCUCCUCCCUGCCCAGCCCAGCCACC	chr17:36891558-36891829(-)$1	271	131	162	26.8749
CCACUCCCCCACCUCCUCCACCACCUCUUCC	chr6:110423191-110423458(-)$1	267	110	141	40.1249

#otherMatches

#Struct PSSM
GGNNNNNFFFFFF{BB::::::::::ccc!!	chr5:167850739-167851084(+)$1	345	137	168	31.7499
:::::::::::::::::HHHHHHHHBBGGGG	chr16:2819116-2819378(+)$1	262	4	35	50.0000
:HHHHHHHHWWWWWWWWWWWWWWWDDDDKKC	chr7:98507765-98508022(+)$1	257	73	104	35.2499
:HHHHHHHH{BB{GGGGGGG:::::::ffff	chr12:122252175-122252455(+)$1	280	68	99	34.7500
qqqqqqqqccc]ccc88888888ccc::::B	chr7:72396140-72396403(+)$1	263	52	83	26.6249
::::GGGGGGGBBYYBBZZZFFFFFFdddd(	chr5:137803355-137803620(+)$1	265	195	226	33.1249
]dddd:::::::::::FFFFFFOOOOOOFFF	chr16:2011593-2011846(+)$1	253	52	83	28.1249
333bbccc]bbccc]a333ddddeeeee]dd	chr3:63981335-63981628(+)$1	293	103	134	28.6249
GGGG::::::::EEEEEBB:::::::cccnn	chr3:48732247-48732536(-)$1	289	132	163	34.3749
:::::::::::DDDD::::ddddqqqqqqqq	chr16:30748737-30749012(+)$1	275	71	102	33.1249
:::::::::::::::::bbyyyyyyyyyyyy	chr2:204305424-204305667(-)$1	243	48	79	33.1249
:::::::::::::::::::::::::dddd""	chr2:204305292-204305543(-)$1	251	101	132	29.3749
^^^^^^^^^^^^^^^^bb]bb::::::ccc%	chr16:30976922-30977165(+)$1	243	96	127	46.5000
!dddd%%%%%%ffffff''''''''bb!!ee	chr16:72821214-72821460(-)$1	246	94	125	36.6249
dddffffff[ddddccc!!ccc^^^^^^^^^	chr8:9413721-9413994(+)$1	273	120	151	29.2499
:::::::dddd&&&&&&&cccnnnnnccc66	chr2:69472328-69472583(+)$1	255	209	240	35.9999
qqqqqqqbb333ccc55555ccc]bb]dddd	chr1:109235061-109235337(+)$1	276	108	139	37.3749
dd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:7045543-7045756(+)$1	213	41	72	32.9999
:::::::::::::::::::::::::::::::	chr19:15536458-15536727(-)$1	269	5	36	56.0000
~~~EEEEE:ddddxxxxxxxxxxxxxxxddd	chr2:55276859-55277169(-)$1	310	148	179	29.1249
#dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:204304938-204305190(-)$1	252	78	109	28.7499
###eeeee[a"""eeeee%%%%%%cccnnnn	chr7:105752512-105752839(-)$1	327	125	156	31.9999
GG:::::::::::::::::::::::::::::	chr5:140953321-140953625(-)$1	304	31	62	56.0000
Gbbmmmmbb:::EEEEE:::::::::::ddd	chr14:99976736-99976991(+)$1	255	84	115	27.7499
::::::::::::::::::::::::::::::g	chr5:140953535-140953790(-)$1	255	196	227	56.0000
:::::::::::::::::::::::::::::::	chr5:140953425-140953644(-)$1	219	50	81	56.0000
eennnnneeeee:::::::::::::::::::	chr16:58620293-58620551(-)$1	258	3	34	30.7499
::::::::::::::::dddd[a[eeeeevvv	chr1:245133935-245134253(+)$1	318	121	152	30.3749
ooooeeeee:::::::::eeeee!!eeeees	chr1:17312459-17312746(-)$1	287	91	122	28.0000
dd''''''''ccc####ffffffnnnnnfff	chr12:69652518-69652786(+)$1	268	169	200	35.7499
:::::::::::::::::::::::::::::::	chr5:176917466-176917785(-)$1	319	108	139	31.1249
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:5352418-5352642(-)$1	224	91	122	50.1250
^^^^^^^^^^^^^^^^^^^^^eeeee99999	chr2:204305564-204305820(-)$1	256	33	64	38.6250
lllhhhhhhhh::::::::::::::::::::	chr1:27736223-27736501(-)$1	278	145	176	51.8750
==]bb]ccc::::::::::::EEEEESSSSS	chr2:102487936-102488239(+)$1	303	111	142	45.7500
JJJJJJJJccc!!bb[ccc[ccc"""dddd!	chr22:42301416-42301665(+)$1	249	86	117	26.1249
rrrccc]dddd]bb>>>>>>>>>>>>>>fff	chr19:14203526-14203821(-)$1	295	80	111	32.7499
d666666eeeee]ccc]bb0000000000dd	chr19:5786773-5787107(-)$1	334	101	132	29.1249
cccccc333a]ffffff:::::::eeeeess	chr17:36891558-36891829(-)$1	271	131	162	26.8749
zzzzzzzzzzzzzzzcccbb]ccc8888888	chr6:110423191-110423458(-)$1	267	110	141	40.1249

#DB
((.....((((((.((..........(((..	chr5:167850739-167851084(+)$1	1	137	168	31.7499
.................((((((((((((((	chr16:2819116-2819378(+)$1	1	4	35	50.0000
.((((((((...............((((..(	chr7:98507765-98508022(+)$1	1	73	104	35.2499
.((((((((.((.(((((((.......((((	chr12:122252175-122252455(+)$1	1	68	99	34.7500
........))).)))........)))....(	chr7:72396140-72396403(+)$1	1	52	83	26.6249
....)))))))))..))...))))))((((.	chr5:137803355-137803620(+)$1	1	195	226	33.1249
.))))...........((((((......(((	chr16:2011593-2011846(+)$1	1	52	83	28.1249
...))))).))))).)...))))))))).))	chr3:63981335-63981628(+)$1	1	103	134	28.6249
))))........(((((((.......(((..	chr3:48732247-48732536(-)$1	1	132	163	34.3749
...........((((....((((........	chr16:30748737-30749012(+)$1	1	71	102	33.1249
.................((............	chr2:204305424-204305667(-)$1	1	48	79	33.1249
.........................((((..	chr2:204305292-204305543(-)$1	1	101	132	29.3749
................)).))......(((.	chr16:30976922-30977165(+)$1	1	96	127	46.5000
.((((......((((((........((..((	chr16:72821214-72821460(-)$1	1	94	125	36.6249
(((((((((.(((((((..(((.........	chr8:9413721-9413994(+)$1	1	120	151	29.2499
.......((((.......(((.....)))..	chr2:69472328-69472583(+)$1	1	209	240	35.9999
.......))...))).....))).)).))))	chr1:109235061-109235337(+)$1	1	108	139	37.3749
((.............................	chr12:7045543-7045756(+)$1	1	41	72	32.9999
...............................	chr19:15536458-15536727(-)$1	1	5	36	56.0000
...))))).((((...............)))	chr2:55276859-55277169(-)$1	1	148	179	29.1249
.((((..........................	chr2:204304938-204305190(-)$1	1	78	109	28.7499
...(((((.(...(((((......(((....	chr7:105752512-105752839(-)$1	1	125	156	31.9999
((.............................	chr5:140953321-140953625(-)$1	1	31	62	56.0000
(((....))...(((((...........(((	chr14:99976736-99976991(+)$1	1	84	115	27.7499
..............................(	chr5:140953535-140953790(-)$1	1	196	227	56.0000
...............................	chr5:140953425-140953644(-)$1	1	50	81	56.0000
((.....)))))...................	chr16:58620293-58620551(-)$1	1	3	34	30.7499
................((((.(.(((((...	chr1:245133935-245134253(+)$1	1	121	152	30.3749
....))))).........(((((..(((((.	chr1:17312459-17312746(-)$1	1	91	122	28.0000
((........(((....((((((.....)))	chr12:69652518-69652786(+)$1	1	169	200	35.7499
...............................	chr5:176917466-176917785(-)$1	1	108	139	31.1249
...............................	chr7:5352418-5352642(-)$1	1	91	122	50.1250
.....................))))).....	chr2:204305564-204305820(-)$1	1	33	64	38.6250
...))))))))....................	chr1:27736223-27736501(-)$1	1	145	176	51.8750
)).)).)))............(((((.....	chr2:102487936-102488239(+)$1	1	111	142	45.7500
(((((((((((..((.(((.(((...((((.	chr22:42301416-42301665(+)$1	1	86	117	26.1249
...))).)))).))..............)))	chr19:14203526-14203821(-)$1	1	80	111	32.7499
)......))))).))).))..........))	chr19:5786773-5787107(-)$1	1	101	132	29.1249
))))))...).)))))).......(((((..	chr17:36891558-36891829(-)$1	1	131	162	26.8749
...............))))).))).......	chr6:110423191-110423458(-)$1	1	110	141	40.1249

#PSSM
C : 0.45	c : 0.45	U : 0.07	G : 0.02	
u : 0.35	U : 0.24	A : 0.12	C : 0.10	g : 0.05	G : 0.05	c : 0.05	a : 0.02	
c : 0.47	C : 0.35	G : 0.05	u : 0.05	g : 0.02	U : 0.02	A : 0.02	
c : 0.47	C : 0.27	u : 0.10	U : 0.07	A : 0.02	G : 0.02	a : 0.02	
u : 0.42	U : 0.24	c : 0.12	C : 0.07	A : 0.05	g : 0.02	G : 0.02	a : 0.02	
c : 0.52	C : 0.32	u : 0.05	U : 0.02	G : 0.02	A : 0.02	g : 0.02	
c : 0.57	C : 0.30	a : 0.02	A : 0.02	U : 0.02	u : 0.02	G : 0.02	
u : 0.35	U : 0.19	c : 0.17	a : 0.07	A : 0.07	C : 0.07	G : 0.02	g : 0.02	
c : 0.55	C : 0.27	u : 0.05	U : 0.05	G : 0.05	g : 0.02	
c : 0.55	C : 0.35	u : 0.05	g : 0.02	G : 0.02	
u : 0.30	c : 0.22	U : 0.17	a : 0.10	C : 0.10	G : 0.05	A : 0.05	
c : 0.57	C : 0.32	A : 0.05	g : 0.02	a : 0.02	
c : 0.50	C : 0.27	u : 0.10	A : 0.05	g : 0.02	U : 0.02	G : 0.02	
u : 0.42	U : 0.17	c : 0.12	C : 0.10	A : 0.07	a : 0.05	g : 0.02	G : 0.02	
c : 0.55	C : 0.32	g : 0.05	A : 0.02	u : 0.02	U : 0.02	
c : 0.52	C : 0.24	U : 0.10	u : 0.07	a : 0.02	G : 0.02	
u : 0.40	U : 0.22	C : 0.12	c : 0.10	g : 0.10	a : 0.02	A : 0.02	
c : 0.57	C : 0.32	u : 0.05	G : 0.02	A : 0.02	
c : 0.60	C : 0.27	U : 0.10	a : 0.02	
u : 0.27	c : 0.17	C : 0.12	U : 0.12	g : 0.10	a : 0.07	A : 0.07	G : 0.05	
c : 0.52	C : 0.32	g : 0.05	G : 0.05	u : 0.05	
c : 0.50	C : 0.30	u : 0.07	A : 0.05	a : 0.02	g : 0.02	G : 0.02	
u : 0.45	C : 0.15	A : 0.12	c : 0.10	U : 0.10	a : 0.05	g : 0.02	
c : 0.57	C : 0.32	a : 0.02	A : 0.02	U : 0.02	u : 0.02	
c : 0.45	C : 0.19	u : 0.12	A : 0.07	G : 0.05	U : 0.05	g : 0.02	a : 0.02	
u : 0.40	U : 0.17	a : 0.10	c : 0.10	C : 0.10	G : 0.05	A : 0.05	g : 0.02	
c : 0.60	C : 0.32	G : 0.07	
c : 0.57	C : 0.22	U : 0.12	G : 0.05	g : 0.02	
u : 0.47	U : 0.30	a : 0.07	c : 0.05	C : 0.05	G : 0.02	A : 0.02	
c : 0.52	C : 0.37	u : 0.05	G : 0.02	g : 0.02	
c : 0.57	C : 0.35	U : 0.05	u : 0.02	

#score	1456.0
#seq	40
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_UTR_m2_run2.nuc.txt

#NT
UUUUCUG	chr16:1872765-1873130(-)$1	365	110	117	13.4615
UUUUCUU	chr12:98943548-98943784(+)$1	236	197	204	17.5384
UUUUAUU	chr15:76577903-76578110(-)$1	207	6	13	14.0769
UUUUCAU	chr2:191066439-191066668(+)$1	229	193	200	13.9230
UUUUCAU	chr1:156290529-156290787(-)$1	258	235	242	13.9230
UUUUCCU	chr17:56568024-56568305(-)$1	281	132	139	13.6923
UUAUCUU	chr17:80445691-80445953(+)$1	262	89	96	13.4615
UUAUCUU	chr8:82629383-82629625(-)$1	242	53	60	13.4615
UUUUCUU	chr3:69150891-69151170(+)$1	279	78	85	17.5384
UUCUCUU	chr11:129990500-129990752(+)$1	252	87	94	13.6923
UUUUCUU	chr8:11696282-11696525(+)$1	243	229	236	17.5384
uuuuauu	chr4:99992387-99992630(-)$1	243	235	242	14.0769
UUUUCUU	chr12:118472689-118472921(-)$1	232	215	222	17.5384
UUGUCUU	chr17:66528651-66528924(+)$1	273	32	39	13.5384
UUUUCUA	chr17:48460010-48460225(-)$1	215	157	164	13.4615
UUUUCUU	chr10:70102086-70102299(+)$1	213	142	149	17.5384
UUUUCUU	chr20:34237418-34237671(-)$1	253	2	9	17.5384
UUUUCUU	chr14:102547919-102548154(-)$1	235	176	183	17.5384
UUUUGUU	chr12:110450852-110451073(+)$1	221	64	71	14.1538
UUUUCAU	chr6:31526400-31526687(+)$1	287	243	250	13.9230
UUUUCUU	chr14:60756423-60756707(+)$1	284	43	50	17.5384
UUUUCUA	chr6:86223810-86224054(-)$1	244	28	35	13.4615
UUUUUUU	chr5:130495189-130495405(-)$1	216	84	91	14.3076
UUUUUUU	chr5:130495169-130495389(-)$1	220	68	75	14.3076
UUUUAUU	chr3:136667234-136667504(+)$1	270	194	201	14.0769
UUUUCUA	chr3:44486697-44486942(-)$1	245	201	208	13.4615
UUCUCUU	chr3:33183785-33184067(+)$1	282	249	256	13.6923
UUUUCUU	chr2:10924274-10924542(-)$1	268	184	191	17.5384
UUUUCUU	chr12:95906477-95906767(+)$1	290	58	65	17.5384
UUUUCCU	chr11:85779855-85780125(-)$1	270	3	10	13.6923
UUCUCUU	chr7:128398947-128399173(+)$1	226	180	187	13.6923
UUUUCUU	chr1:45316469-45316756(-)$1	287	68	75	17.5384
UUUUCUU	chr1:54238014-54238265(-)$1	251	85	92	17.5384
UUUUCUU	chr4:2930851-2931099(+)$1	248	124	131	17.5384
UUUUCCU	chr12:76443411-76443633(-)$1	222	55	62	13.6923
UUUUCAU	chr5:132440443-132440710(+)$1	267	25	32	13.9230
UUUUCUU	chr18:10552245-10552477(+)$1	232	143	150	17.5384
UUUUCUU	chr20:44038910-44039197(+)$1	287	148	155	17.5384
UUUUGUU	chr2:54117191-54117448(-)$1	257	88	95	14.1538
UUUUUUU	chr3:184052827-184053099(+)$1	272	166	173	14.3076
UUUUAUU	chr15:52843860-52844092(-)$1	232	29	36	14.0769
UUUUCUA	chr8:98725787-98726065(+)$1	278	40	47	13.4615
UUGUCUU	chr6:18224680-18224927(-)$1	247	199	206	13.5384
UUUUUUU	chr12:16052736-16053026(+)$1	290	31	38	14.3076
UUCUCUU	chr1:46027363-46027579(+)$1	216	74	81	13.6923
UUUUCUU	chr6:35856511-35856803(-)$1	292	43	50	17.5384
UUUUGUU	chr3:122811124-122811393(+)$1	269	58	65	14.1538
uuuuuuu	chr14:57700612-57700838(-)$1	226	24	31	14.3076
UUUUCCU	chr11:62392518-62392761(-)$1	243	63	70	13.6923
UUUUUUU	chr2:113416377-113416607(+)$1	230	11	18	14.3076
UUUUCUG	chrX:137713747-137714059(-)$1	312	226	233	13.4615
UUUUCUU	chr19:9273611-9273882(+)$1	271	120	127	17.5384
UUUUCUU	chrX:30269707-30270005(+)$1	298	86	93	17.5384
UUUUCUG	chr11:110101524-110101738(-)$1	214	64	71	13.4615
UUUUCAU	chr12:54629600-54629817(-)$1	217	69	76	13.9230
UUUUCUU	chr10:75881866-75882119(-)$1	253	124	131	17.5384
UUUUUUU	chr22:38254586-38254814(+)$1	228	182	189	14.3076
UUUUGUU	chr2:39477483-39477730(-)$1	247	118	125	14.1538
UUUUCUG	chr12:123892771-123893018(+)$1	247	103	110	13.4615
UUGUCUU	chr9:86274867-86275149(-)$1	282	273	280	13.5384
UUUUGUU	chr9:95022412-95022616(-)$1	204	86	93	14.1538
UUUUCUU	chr11:18424457-18424661(+)$1	204	117	124	17.5384
UUUUCAU	chr11:14529114-14529364(-)$1	250	3	10	13.9230
UUUUCAU	chr20:57025358-57025655(+)$1	297	7	14	13.9230

#otherMatches

#Struct PSSM
:::::::	chr21:45193809-45194052(-)$1	243	120	127	13.6923
hhhhhhh	chr16:1872765-1873130(-)$1	365	110	117	13.4615
b::::::	chr12:98943548-98943784(+)$1	236	197	204	17.5384
:HHHHHH	chr15:76577903-76578110(-)$1	207	6	13	14.0769
JJJJJ@@	chr2:191066439-191066668(+)$1	229	193	200	13.9230
FFFFFYY	chr1:156290529-156290787(-)$1	258	235	242	13.9230
ttttttt	chr17:56568024-56568305(-)$1	281	132	139	13.6923
iiiiiii	chr17:80445691-80445953(+)$1	262	89	96	13.4615
cc"""hh	chr8:82629383-82629625(-)$1	242	53	60	13.4615
:::::::	chr3:69150891-69151170(+)$1	279	78	85	17.5384
dd]bb99	chr11:129990500-129990752(+)$1	252	87	94	13.6923
gggggg2	chr8:11696282-11696525(+)$1	243	229	236	17.5384
JJJJJJJ	chr4:99992387-99992630(-)$1	243	235	242	14.0769
::cccqq	chr12:118472689-118472921(-)$1	232	215	222	17.5384
Eddddoo	chr17:66528651-66528924(+)$1	273	32	39	13.5384
fff[aee	chr17:48460010-48460225(-)$1	215	157	164	13.4615
ZZZCCC:	chr10:70102086-70102299(+)$1	213	142	149	17.5384
EEEEEKK	chr20:34237418-34237671(-)$1	253	2	9	17.5384
qqqqqqq	chr14:102547919-102548154(-)$1	235	176	183	17.5384
eeee:::	chr12:110450852-110451073(+)$1	221	64	71	14.1538
JJJJJJJ	chr6:31526400-31526687(+)$1	287	243	250	13.9230
:::::::	chr14:60756423-60756707(+)$1	284	43	50	17.5384
nnnnndd	chr6:86223810-86224054(-)$1	244	28	35	13.4615
bwwwwww	chr5:130495189-130495405(-)$1	216	84	91	14.3076
bwwwwww	chr5:130495169-130495389(-)$1	220	68	75	14.3076
mmmdddd	chr3:136667234-136667504(+)$1	270	194	201	14.0769
:::::::	chr3:44486697-44486942(-)$1	245	201	208	13.4615
hhhhhhh	chr3:33183785-33184067(+)$1	282	249	256	13.6923
:::::::	chr2:10924274-10924542(-)$1	268	184	191	17.5384
EKKBB{D	chr12:95906477-95906767(+)$1	290	58	65	17.5384
:::::::	chr11:85779855-85780125(-)$1	270	3	10	13.6923
ffffFFF	chr7:128398947-128399173(+)$1	226	180	187	13.6923
:::bb[e	chr1:45316469-45316756(-)$1	287	68	75	17.5384
d%%%%%%	chr1:54238014-54238265(-)$1	251	85	92	17.5384
666666f	chr4:2930851-2931099(+)$1	248	124	131	17.5384
ddd[fff	chr12:76443411-76443633(-)$1	222	55	62	13.6923
b:::::e	chr5:132440443-132440710(+)$1	267	25	32	13.9230
hhhhhhh	chr18:10552245-10552477(+)$1	232	143	150	17.5384
doooooo	chr20:44038910-44039197(+)$1	287	148	155	17.5384
ee=====	chr2:54117191-54117448(-)$1	257	88	95	14.1538
eeeeess	chr3:184052827-184053099(+)$1	272	166	173	14.3076
dd[ccc[	chr15:52843860-52844092(-)$1	232	29	36	14.0769
iiii:::	chr8:98725787-98726065(+)$1	278	40	47	13.4615
HHHHH::	chr6:18224680-18224927(-)$1	247	199	206	13.5384
:::::::	chr12:16052736-16053026(+)$1	290	31	38	14.3076
dd[ccc[	chr1:46027363-46027579(+)$1	216	74	81	13.6923
oobb]cc	chr6:35856511-35856803(-)$1	292	43	50	17.5384
888dddd	chr3:122811124-122811393(+)$1	269	58	65	14.1538
DKKJJJJ	chr14:57700612-57700838(-)$1	226	24	31	14.3076
777cccb	chr11:62392518-62392761(-)$1	243	63	70	13.6923
dddffff	chr2:113416377-113416607(+)$1	230	11	18	14.3076
mmmmccc	chrX:137713747-137714059(-)$1	312	226	233	13.4615
gggg:::	chr19:9273611-9273882(+)$1	271	120	127	17.5384
OEEEEE:	chrX:30269707-30270005(+)$1	298	86	93	17.5384
eeemmmm	chr11:110101524-110101738(-)$1	214	64	71	13.4615
eeeeeee	chr12:54629600-54629817(-)$1	217	69	76	13.9230
c333bb2	chr10:75881866-75882119(-)$1	253	124	131	17.5384
HHHHGGG	chr22:38254586-38254814(+)$1	228	182	189	14.3076
=======	chr2:39477483-39477730(-)$1	247	118	125	14.1538
"""eeee	chr12:123892771-123893018(+)$1	247	103	110	13.4615
GGGGG::	chr9:86274867-86275149(-)$1	282	273	280	13.5384
=======	chr9:95022412-95022616(-)$1	204	86	93	14.1538
c!!hhhh	chr11:18424457-18424661(+)$1	204	117	124	17.5384
:::::::	chr11:14529114-14529364(-)$1	250	3	10	13.9230
f^^^^^^	chr20:57025358-57025655(+)$1	297	7	14	13.9230

#DB
.......	chr21:45193809-45194052(-)$1	1	120	127	13.6923
(((((((	chr16:1872765-1873130(-)$1	1	110	117	13.4615
)......	chr12:98943548-98943784(+)$1	1	197	204	17.5384
.((((((	chr15:76577903-76578110(-)$1	1	6	13	14.0769
)))))..	chr2:191066439-191066668(+)$1	1	193	200	13.9230
)))))..	chr1:156290529-156290787(-)$1	1	235	242	13.9230
.......	chr17:56568024-56568305(-)$1	1	132	139	13.6923
)))))))	chr17:80445691-80445953(+)$1	1	89	96	13.4615
((...((	chr8:82629383-82629625(-)$1	1	53	60	13.4615
.......	chr3:69150891-69151170(+)$1	1	78	85	17.5384
)).))..	chr11:129990500-129990752(+)$1	1	87	94	13.6923
)))))).	chr8:11696282-11696525(+)$1	1	229	236	17.5384
)))))))	chr4:99992387-99992630(-)$1	1	235	242	14.0769
..(((..	chr12:118472689-118472921(-)$1	1	215	222	17.5384
(((((..	chr17:66528651-66528924(+)$1	1	32	39	13.5384
(((.(((	chr17:48460010-48460225(-)$1	1	157	164	13.4615
...))).	chr10:70102086-70102299(+)$1	1	142	149	17.5384
(((((..	chr20:34237418-34237671(-)$1	1	2	9	17.5384
.......	chr14:102547919-102548154(-)$1	1	176	183	17.5384
))))...	chr12:110450852-110451073(+)$1	1	64	71	14.1538
)))))))	chr6:31526400-31526687(+)$1	1	243	250	13.9230
.......	chr14:60756423-60756707(+)$1	1	43	50	17.5384
.....))	chr6:86223810-86224054(-)$1	1	28	35	13.4615
(......	chr5:130495189-130495405(-)$1	1	84	91	14.3076
(......	chr5:130495169-130495389(-)$1	1	68	75	14.3076
...))))	chr3:136667234-136667504(+)$1	1	194	201	14.0769
.......	chr3:44486697-44486942(-)$1	1	201	208	13.4615
(((((((	chr3:33183785-33184067(+)$1	1	249	256	13.6923
.......	chr2:10924274-10924542(-)$1	1	184	191	17.5384
(..((.(	chr12:95906477-95906767(+)$1	1	58	65	17.5384
.......	chr11:85779855-85780125(-)$1	1	3	10	13.6923
)))))))	chr7:128398947-128399173(+)$1	1	180	187	13.6923
...((.(	chr1:45316469-45316756(-)$1	1	68	75	17.5384
(......	chr1:54238014-54238265(-)$1	1	85	92	17.5384
......)	chr4:2930851-2931099(+)$1	1	124	131	17.5384
(((.(((	chr12:76443411-76443633(-)$1	1	55	62	13.6923
).....(	chr5:132440443-132440710(+)$1	1	25	32	13.9230
(((((((	chr18:10552245-10552477(+)$1	1	143	150	17.5384
(......	chr20:44038910-44039197(+)$1	1	148	155	17.5384
(((((((	chr2:54117191-54117448(-)$1	1	88	95	14.1538
(((((..	chr3:184052827-184053099(+)$1	1	166	173	14.3076
((.(((.	chr15:52843860-52844092(-)$1	1	29	36	14.0769
))))...	chr8:98725787-98726065(+)$1	1	40	47	13.4615
)))))..	chr6:18224680-18224927(-)$1	1	199	206	13.5384
.......	chr12:16052736-16053026(+)$1	1	31	38	14.3076
((.(((.	chr1:46027363-46027579(+)$1	1	74	81	13.6923
..)).))	chr6:35856511-35856803(-)$1	1	43	50	17.5384
...))))	chr3:122811124-122811393(+)$1	1	58	65	14.1538
(..((((	chr14:57700612-57700838(-)$1	1	24	31	14.3076
...))))	chr11:62392518-62392761(-)$1	1	63	70	13.6923
(((((((	chr2:113416377-113416607(+)$1	1	11	18	14.3076
....)))	chrX:137713747-137714059(-)$1	1	226	233	13.4615
))))...	chr19:9273611-9273882(+)$1	1	120	127	17.5384
.(((((.	chrX:30269707-30270005(+)$1	1	86	93	17.5384
(((....	chr11:110101524-110101738(-)$1	1	64	71	13.4615
)))))))	chr12:54629600-54629817(-)$1	1	69	76	13.9230
)...)).	chr10:75881866-75882119(-)$1	1	124	131	17.5384
)))))))	chr22:38254586-38254814(+)$1	1	182	189	14.3076
)))))))	chr2:39477483-39477730(-)$1	1	118	125	14.1538
...((((	chr12:123892771-123893018(+)$1	1	103	110	13.4615
)))))..	chr9:86274867-86275149(-)$1	1	273	280	13.5384
)))))))	chr9:95022412-95022616(-)$1	1	86	93	14.1538
(..((((	chr11:18424457-18424661(+)$1	1	117	124	17.5384
.......	chr11:14529114-14529364(-)$1	1	3	10	13.9230
(......	chr20:57025358-57025655(+)$1	1	7	14	13.9230

#PSSM
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	
U : 0.81	C : 0.07	G : 0.04	A : 0.03	u : 0.03	
U : 0.96	u : 0.03	
C : 0.75	U : 0.09	G : 0.07	A : 0.04	a : 0.01	u : 0.01	
U : 0.79	A : 0.10	C : 0.06	u : 0.03	
U : 0.84	G : 0.06	A : 0.06	u : 0.03	

#score	973.9230769230753
#seq	65
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_UTR_m1_run2.nuc.txt

#NT
GCGCUGGG	chr6:74230406-74230712(-)$1	306	188	196	15.5789
GGGGUGGG	chr16:30764543-30764854(+)$1	311	110	118	16.2368
GGGCUGUG	chr19:18544209-18544448(+)$1	239	64	72	15.7105
CGGCUGGG	chr11:810017-810263(+)$1	246	50	58	15.9736
gggcuggg	chr5:159848814-159849064(+)$1	250	173	181	19.9868
GGGCUGAG	chr17:74732724-74732960(-)$1	236	87	95	15.8421
GAGCUggg	chr17:79917503-79917752(-)$1	249	114	122	15.6447
GGGCUGAG	chr16:28847692-28847998(+)$1	306	155	163	15.8421
GGGCUGGG	chr7:75614740-75615006(+)$1	266	102	110	19.9868
GGGCUGGG	chr1:228295887-228296154(-)$1	267	57	65	19.9868
GGGCUGGG	chr17:79827001-79827262(-)$1	261	94	102	19.9868
GGGCAGGG	chr19:36705964-36706287(+)$1	323	213	221	16.6315
GGACUGGG	chr7:150020588-150020865(+)$1	277	69	77	15.5131
gggcgggg	chr1:1447799-1448077(+)$1	278	66	74	16.6315
GGGCUGAG	chr12:6439325-6439563(-)$1	238	52	60	15.8421
GGGAUGGG	chr20:61449075-61449314(+)$1	239	58	66	15.8421
GAGCUGGG	chr11:118927507-118927795(-)$1	288	35	43	15.6447
gggcuggg	chr17:7080111-7080367(-)$1	256	85	93	19.9868
AGGCUGGG	chr20:56139554-56139834(+)$1	280	134	142	15.8421
GGCCUGGG	chr2:97533507-97533791(-)$1	284	213	221	15.5131
GGGCAGGG	chr3:52019745-52019984(+)$1	239	44	52	16.6315
GGGCGGGG	chr8:146017472-146017719(-)$1	247	119	127	16.6315
gggccggg	chr10:102759612-102759888(+)$1	276	5	13	16.4342
GGGCUGGG	chr8:144921618-144921981(-)$1	363	85	93	19.9868
gggcaggg	chr6:86352565-86352817(-)$1	252	31	39	16.6315
GGGCUGGG	chr14:89029743-89030029(+)$1	286	68	76	19.9868
gggcugag	chr7:44788403-44788708(+)$1	305	118	126	15.8421
GGGGUGGG	chr19:45873464-45873712(-)$1	248	26	34	16.2368
cggcUGGG	chr2:235860613-235860864(+)$1	251	134	142	15.9736
GGGCUGCG	chr16:1359740-1360041(+)$1	301	16	24	15.7763
GGCCUGGG	chr20:361765-362041(+)$1	276	238	246	15.5131
GGGCUGGG	chr11:64815271-64815506(-)$1	235	133	141	19.9868
GGGGUGGG	chr5:176861866-176862135(+)$1	269	90	98	16.2368
GGGGUGGG	chr3:184033027-184033282(+)$1	255	111	119	16.2368
CGGCUGGG	chr14:23776365-23776629(+)$1	264	116	124	15.9736
GGACUGGG	chr21:46915277-46915552(+)$1	275	89	97	15.5131
GGUCUGGG	chr1:155885504-155885753(-)$1	249	63	71	15.5131
CGGCUGGG	chr17:7477040-7477295(+)$1	255	214	222	15.9736
CGGCUGGG	chr5:111092680-111092987(-)$1	307	179	187	15.9736
GGGGUGGG	chr19:1104629-1104872(+)$1	243	66	74	16.2368
AGGCUGGG	chr15:74917069-74917347(+)$1	278	30	38	15.8421
GGGCUGCG	chr10:102729235-102729492(+)$1	257	157	165	15.7763
GGGCCGGG	chr11:66372979-66373286(+)$1	307	33	41	16.4342
GGUCUGGG	chr13:27825756-27826048(+)$1	292	143	151	15.5131
gggcgggg	chrX:20284612-20284830(-)$1	218	34	42	16.6315
UGGCUGGG	chr17:76116797-76117043(-)$1	246	176	184	15.7763
GGGCCGGG	chr10:135171133-135171470(-)$1	337	55	63	16.4342
GGGGUGGG	chr1:45798505-45798782(-)$1	277	75	83	16.2368
GGGCAGGG	chr17:38080367-38080634(-)$1	267	107	115	16.6315
GGGCUGGG	chr19:35500226-35500463(+)$1	237	150	158	19.9868
GGGAUGGG	chr11:18416085-18416416(+)$1	331	130	138	15.8421
GGGCUGGG	chr17:8339523-8339773(+)$1	250	151	159	19.9868
GGGCAGGG	chr11:67810613-67810937(+)$1	324	102	110	16.6315
GGGCAGGG	chr3:49051449-49051726(+)$1	277	115	123	16.6315
AGGCUGGG	chr16:2136744-2137082(+)$1	338	149	157	15.8421
GGGCAGGG	chr3:48457702-48457951(-)$1	249	10	18	16.6315
GGGCUGGG	chr19:11038948-11039259(-)$1	311	76	84	19.9868
gggcugug	chr17:77813026-77813286(-)$1	260	107	115	15.7105
GGGCCGGG	chr20:33872174-33872448(-)$1	274	44	52	16.4342
GGGCUGCG	chr9:74979402-74979675(-)$1	273	76	84	15.7763
GGGGUGGG	chr19:11512664-11512904(-)$1	240	55	63	16.2368
GUGCUGGG	chr14:23393500-23393743(-)$1	243	152	160	15.5789
GGGCUGGG	chr19:1418538-1418825(+)$1	287	197	205	19.9868
GCGCUGGG	chr1:205492440-205492693(+)$1	253	92	100	15.5789
GGGUUGGG	chr2:71295806-71296109(+)$1	303	245	253	15.7763
GGGGUGGG	chr17:76122891-76123181(-)$1	290	73	81	16.2368
UGGCUGGG	chr2:220081088-220081417(-)$1	329	93	101	15.7763
GGGCGGGG	chr8:42010574-42010849(+)$1	275	111	119	16.6315
GGGCGGGG	chr6:43395435-43395813(+)$1	378	130	138	16.6315
GGGCGGGG	chr5:154135048-154135291(+)$1	243	4	12	16.6315
GGGCGGGG	chr12:57522732-57522977(+)$1	245	226	234	16.6315
GAGCUGGG	chr17:37872753-37873095(+)$1	342	125	133	15.6447
GGGCUGGG	chr6:32942119-32942378(+)$1	259	150	158	19.9868
GGGCUGGG	chr17:73569955-73570207(+)$1	252	205	213	19.9868
GUGCUGGG	chr3:49052624-49052865(+)$1	241	117	125	15.5789

#otherMatches

#Struct PSSM
eeeeemmm	chr19:39125679-39125975(+)$1	296	182	190	19.9868
ffff[ccc	chr6:74230406-74230712(-)$1	306	188	196	15.5789
eeee[ccc	chr16:30764543-30764854(+)$1	311	110	118	16.2368
eeeee]bb	chr19:18544209-18544448(+)$1	239	64	72	15.7105
FFFF{BBC	chr11:810017-810263(+)$1	246	50	58	15.9736
ee[bb[dd	chr5:159848814-159849064(+)$1	250	173	181	19.9868
]a]ccc]d	chr17:74732724-74732960(-)$1	236	87	95	15.8421
ddd:::BB	chr17:79917503-79917752(-)$1	249	114	122	15.6447
hhhhh22f	chr16:28847692-28847998(+)$1	306	155	163	15.8421
cc[cccbb	chr7:75614740-75615006(+)$1	266	102	110	19.9868
dddd:ddd	chr1:228295887-228296154(-)$1	267	57	65	19.9868
iii[eeee	chr17:79827001-79827262(-)$1	261	94	102	19.9868
dddd[fff	chr19:36705964-36706287(+)$1	323	213	221	16.6315
LLLBB{CC	chr7:150020588-150020865(+)$1	277	69	77	15.5131
KCCC{CCC	chr1:1447799-1448077(+)$1	278	66	74	16.6315
eeeee===	chr12:6439325-6439563(-)$1	238	52	60	15.8421
mmbb]bb]	chr20:61449075-61449314(+)$1	239	58	66	15.8421
mmmmdddd	chr11:118927507-118927795(-)$1	288	35	43	15.6447
eeeee]bb	chr17:7080111-7080367(-)$1	256	85	93	19.9868
:FFFFFFZ	chr20:56139554-56139834(+)$1	280	134	142	15.8421
iiiicccd	chr2:97533507-97533791(-)$1	284	213	221	15.5131
HHHHHHHH	chr3:52019745-52019984(+)$1	239	44	52	16.6315
mmmggggg	chr8:146017472-146017719(-)$1	247	119	127	16.6315
d!!dddd!	chr10:102759612-102759888(+)$1	276	5	13	16.4342
33bbffff	chr8:144921618-144921981(-)$1	363	85	93	19.9868
LCCCLLLH	chr6:86352565-86352817(-)$1	252	31	39	16.6315
i333cccd	chr14:89029743-89030029(+)$1	286	68	76	19.9868
b]dddd::	chr7:44788403-44788708(+)$1	305	118	126	15.8421
CCC{A{BB	chr19:45873464-45873712(-)$1	248	26	34	16.2368
ee[dddd[	chr2:235860613-235860864(+)$1	251	134	142	15.9736
ddddpppp	chr16:1359740-1360041(+)$1	301	16	24	15.7763
ggggggg]	chr20:361765-362041(+)$1	276	238	246	15.5131
e!!iiiii	chr11:64815271-64815506(-)$1	235	133	141	19.9868
deeeeedd	chr5:176861866-176862135(+)$1	269	90	98	16.2368
JJJJJJJJ	chr3:184033027-184033282(+)$1	255	111	119	16.2368
JJJJJJJJ	chr14:23776365-23776629(+)$1	264	116	124	15.9736
####iiii	chr21:46915277-46915552(+)$1	275	89	97	15.5131
cbbfffff	chr1:155885504-155885753(-)$1	249	63	71	15.5131
777=====	chr17:7477040-7477295(+)$1	255	214	222	15.9736
========	chr5:111092680-111092987(-)$1	307	179	187	15.9736
eeeeffff	chr19:1104629-1104872(+)$1	243	66	74	16.2368
ggeeeeem	chr15:74917069-74917347(+)$1	278	30	38	15.8421
eeeeffff	chr10:102729235-102729492(+)$1	257	157	165	15.7763
dllldddd	chr11:66372979-66373286(+)$1	307	33	41	16.4342
cccbb[dd	chr13:27825756-27826048(+)$1	292	143	151	15.5131
A{IIIIII	chrX:20284612-20284830(-)$1	218	34	42	16.6315
ddddccca	chr17:76116797-76117043(-)$1	246	176	184	15.7763
ccFFFFFF	chr10:135171133-135171470(-)$1	337	55	63	16.4342
hhhhheee	chr1:45798505-45798782(-)$1	277	75	83	16.2368
GGGdddd!	chr17:38080367-38080634(-)$1	267	107	115	16.6315
b[ccc[bb	chr19:35500226-35500463(+)$1	237	150	158	19.9868
eeeeeddd	chr11:18416085-18416416(+)$1	331	130	138	15.8421
========	chr17:8339523-8339773(+)$1	250	151	159	19.9868
========	chr11:67810613-67810937(+)$1	324	102	110	16.6315
fff[bb[b	chr3:49051449-49051726(+)$1	277	115	123	16.6315
[ccc"""c	chr16:2136744-2137082(+)$1	338	149	157	15.8421
iiiiiii"	chr3:48457702-48457951(-)$1	249	10	18	16.6315
bbiiiiii	chr19:11038948-11039259(-)$1	311	76	84	19.9868
JJJJJJ{C	chr17:77813026-77813286(-)$1	260	107	115	15.7105
ffffff[f	chr20:33872174-33872448(-)$1	274	44	52	16.4342
dd22dddd	chr9:74979402-74979675(-)$1	273	76	84	15.7763
HHGGGGGG	chr19:11512664-11512904(-)$1	240	55	63	16.2368
fffff22c	chr14:23393500-23393743(-)$1	243	152	160	15.5789
JJJJJJCC	chr19:1418538-1418825(+)$1	287	197	205	19.9868
nnccc:JJ	chr1:205492440-205492693(+)$1	253	92	100	15.5789
FFFFFF}B	chr2:71295806-71296109(+)$1	303	245	253	15.7763
hhhhhhh#	chr17:76122891-76123181(-)$1	290	73	81	16.2368
e[ccc[bb	chr2:220081088-220081417(-)$1	329	93	101	15.7763
{DDDDBBE	chr8:42010574-42010849(+)$1	275	111	119	16.6315
DDD{EEEE	chr6:43395435-43395813(+)$1	378	130	138	16.6315
========	chr5:154135048-154135291(+)$1	243	4	12	16.6315
JJJJJJJJ	chr12:57522732-57522977(+)$1	245	226	234	16.6315
44cccfff	chr17:37872753-37873095(+)$1	342	125	133	15.6447
EECCC}EE	chr6:32942119-32942378(+)$1	259	150	158	19.9868
iiiiiiii	chr17:73569955-73570207(+)$1	252	205	213	19.9868
========	chr3:49052624-49052865(+)$1	241	117	125	15.5789

#DB
(((((...	chr19:39125679-39125975(+)$1	1	182	190	19.9868
((((.(((	chr6:74230406-74230712(-)$1	1	188	196	15.5789
((((.(((	chr16:30764543-30764854(+)$1	1	110	118	16.2368
))))).))	chr19:18544209-18544448(+)$1	1	64	72	15.7105
((((.(((	chr11:810017-810263(+)$1	1	50	58	15.9736
((.((.((	chr5:159848814-159849064(+)$1	1	173	181	19.9868
.).))).)	chr17:74732724-74732960(-)$1	1	87	95	15.8421
)))...))	chr17:79917503-79917752(-)$1	1	114	122	15.6447
)))))..)	chr16:28847692-28847998(+)$1	1	155	163	15.8421
((.(((((	chr7:75614740-75615006(+)$1	1	102	110	19.9868
)))).(((	chr1:228295887-228296154(-)$1	1	57	65	19.9868
(((.((((	chr17:79827001-79827262(-)$1	1	94	102	19.9868
((((.(((	chr19:36705964-36706287(+)$1	1	213	221	16.6315
...((.((	chr7:150020588-150020865(+)$1	1	69	77	15.5131
.(((.(((	chr1:1447799-1448077(+)$1	1	66	74	16.6315
)))))(((	chr12:6439325-6439563(-)$1	1	52	60	15.8421
..)).)).	chr20:61449075-61449314(+)$1	1	58	66	15.8421
....))))	chr11:118927507-118927795(-)$1	1	35	43	15.6447
))))).))	chr17:7080111-7080367(-)$1	1	85	93	19.9868
.)))))).	chr20:56139554-56139834(+)$1	1	134	142	15.8421
))))))))	chr2:97533507-97533791(-)$1	1	213	221	15.5131
((((((((	chr3:52019745-52019984(+)$1	1	44	52	16.6315
...)))))	chr8:146017472-146017719(-)$1	1	119	127	16.6315
(..((((.	chr10:102759612-102759888(+)$1	1	5	13	16.4342
..))))))	chr8:144921618-144921981(-)$1	1	85	93	19.9868
.(((...(	chr6:86352565-86352817(-)$1	1	31	39	16.6315
)...))))	chr14:89029743-89030029(+)$1	1	68	76	19.9868
).))))..	chr7:44788403-44788708(+)$1	1	118	126	15.8421
(((.(.((	chr19:45873464-45873712(-)$1	1	26	34	16.2368
((.((((.	chr2:235860613-235860864(+)$1	1	134	142	15.9736
((((....	chr16:1359740-1360041(+)$1	1	16	24	15.7763
))))))).	chr20:361765-362041(+)$1	1	238	246	15.5131
(..(((((	chr11:64815271-64815506(-)$1	1	133	141	19.9868
)(((((((	chr5:176861866-176862135(+)$1	1	90	98	16.2368
((((((((	chr3:184033027-184033282(+)$1	1	111	119	16.2368
))))))))	chr14:23776365-23776629(+)$1	1	116	124	15.9736
....((((	chr21:46915277-46915552(+)$1	1	89	97	15.5131
)(((((((	chr1:155885504-155885753(-)$1	1	63	71	15.5131
...)))))	chr17:7477040-7477295(+)$1	1	214	222	15.9736
((((((((	chr5:111092680-111092987(-)$1	1	179	187	15.9736
))))))))	chr19:1104629-1104872(+)$1	1	66	74	16.2368
(((((((.	chr15:74917069-74917347(+)$1	1	30	38	15.8421
))))((((	chr10:102729235-102729492(+)$1	1	157	165	15.7763
(...))))	chr11:66372979-66373286(+)$1	1	33	41	16.4342
(((((.((	chr13:27825756-27826048(+)$1	1	143	151	15.5131
(.((((((	chrX:20284612-20284830(-)$1	1	34	42	16.6315
))))))))	chr17:76116797-76117043(-)$1	1	176	184	15.7763
))((((((	chr10:135171133-135171470(-)$1	1	55	63	16.4342
)))))(((	chr1:45798505-45798782(-)$1	1	75	83	16.2368
)))((((.	chr17:38080367-38080634(-)$1	1	107	115	16.6315
(.(((.((	chr19:35500226-35500463(+)$1	1	150	158	19.9868
)))))(((	chr11:18416085-18416416(+)$1	1	130	138	15.8421
((((((((	chr17:8339523-8339773(+)$1	1	151	159	19.9868
))))))))	chr11:67810613-67810937(+)$1	1	102	110	16.6315
(((.((.(	chr3:49051449-49051726(+)$1	1	115	123	16.6315
.(((...(	chr16:2136744-2137082(+)$1	1	149	157	15.8421
(((((((.	chr3:48457702-48457951(-)$1	1	10	18	16.6315
))((((((	chr19:11038948-11039259(-)$1	1	76	84	19.9868
((((((.(	chr17:77813026-77813286(-)$1	1	107	115	15.7105
((((((.(	chr20:33872174-33872448(-)$1	1	44	52	16.4342
))..))))	chr9:74979402-74979675(-)$1	1	76	84	15.7763
((((((((	chr19:11512664-11512904(-)$1	1	55	63	16.2368
)))))..)	chr14:23393500-23393743(-)$1	1	152	160	15.5789
))))))))	chr19:1418538-1418825(+)$1	1	197	205	19.9868
..))).((	chr1:205492440-205492693(+)$1	1	92	100	15.5789
)))))).)	chr2:71295806-71296109(+)$1	1	245	253	15.7763
(((((((.	chr17:76122891-76123181(-)$1	1	73	81	16.2368
(.(((.((	chr2:220081088-220081417(-)$1	1	93	101	15.7763
.(((((((	chr8:42010574-42010849(+)$1	1	111	119	16.6315
(((.((((	chr6:43395435-43395813(+)$1	1	130	138	16.6315
((((((((	chr5:154135048-154135291(+)$1	1	4	12	16.6315
))))))))	chr12:57522732-57522977(+)$1	1	226	234	16.6315
..))))))	chr17:37872753-37873095(+)$1	1	125	133	15.6447
))))).))	chr6:32942119-32942378(+)$1	1	150	158	19.9868
((((((((	chr17:73569955-73570207(+)$1	1	205	213	19.9868
((((((((	chr3:49052624-49052865(+)$1	1	117	125	15.5789

#PSSM
G : 0.76	g : 0.10	C : 0.05	A : 0.03	U : 0.02	c : 0.01	
G : 0.78	g : 0.11	A : 0.03	C : 0.02	U : 0.02	
G : 0.80	g : 0.11	A : 0.02	C : 0.02	U : 0.02	
C : 0.73	c : 0.11	G : 0.10	A : 0.02	U : 0.01	
U : 0.71	A : 0.07	G : 0.06	u : 0.05	C : 0.03	g : 0.02	c : 0.01	a : 0.01	
G : 0.88	g : 0.11	
G : 0.78	g : 0.09	A : 0.03	C : 0.03	U : 0.01	a : 0.01	u : 0.01	
G : 0.88	g : 0.11	

#score	1279.1315789473686
#seq	76
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_UTR_m3_run1.nuc.txt

#NT
UGGAGGAA	chr6:56338604-56338874(-)$1	270	81	89	14.6521
UGGAGGGG	chr17:4792845-4793072(+)$1	227	33	41	15.5217
gggaggcg	chr9:134615146-134615428(-)$1	282	16	24	13.1304
UGGAGGAG	chr15:93552274-93552555(+)$1	281	271	279	18.9999
UGGAGAAG	chr6:30545797-30546071(+)$1	274	111	119	14.8695
UAGAGGAG	chr3:184040525-184040752(+)$1	227	104	112	14.5434
UCGAGGAG	chr2:232576565-232576793(+)$1	228	26	34	14.4347
AGGAGGAG	chr20:2638673-2639016(+)$1	343	22	30	16.4999
UGCAGGAG	chr3:25650958-25651203(-)$1	245	68	76	14.8695
UGGAGGUG	chr19:5711702-5712021(-)$1	319	28	36	15.1956
UGGAUGAG	chr1:220320991-220321255(+)$1	264	89	97	14.5434
UGGUGGAG	chr15:42705296-42705548(-)$1	252	60	68	14.2173
AGGAGaag	chr17:48823068-48823400(+)$1	332	64	72	12.3695
GGGAGGAG	chr9:134350839-134351133(+)$1	294	167	175	16.9347
GGGAGGAG	chr4:40154300-40154599(+)$1	299	163	171	16.9347
UGGAGCAG	chr14:31590504-31590735(-)$1	231	116	124	14.7608
AGGAGGAG	chr3:184039648-184039870(+)$1	222	81	89	16.4999
UGGAGGAA	chr6:56417785-56418037(-)$1	252	13	21	14.6521
UGGAUGAG	chr18:12329450-12329805(-)$1	355	144	152	14.5434
UGGAGGGG	chr2:232577412-232577654(+)$1	242	68	76	15.5217
UGCAGGAG	chr1:27105853-27106107(+)$1	254	36	44	14.8695
AGGAGGAG	chr16:27373671-27374044(+)$1	373	116	124	16.4999
GGGAGGAG	chr1:19438917-19439129(-)$1	212	75	83	16.9347
UGGAGGAG	chrX:154004412-154004700(+)$1	288	278	286	18.9999
GGGAGGAG	chr22:29696008-29696275(+)$1	267	14	22	16.9347
GGGAGGGG	chr3:184052845-184053084(+)$1	239	116	124	13.4565
GGGAGCAG	chr2:153529391-153529656(-)$1	265	122	130	12.6956
UGGAGGUG	chr2:48026098-48026376(+)$1	278	82	90	15.1956
UAGAGGAG	chr3:184040553-184040837(+)$1	284	76	84	14.5434
CGGAGGAG	chr17:38278707-38278972(+)$1	265	8	16	15.9565
UGCAGGAG	chr16:27497275-27497568(-)$1	293	192	200	14.8695
aggaagag	chr11:129991592-129991806(+)$1	214	46	54	11.9347
ugaaggag	chr9:100777543-100777858(+)$1	315	151	159	14.7608
UGGAGGAG	chr5:154172169-154172458(+)$1	289	262	270	18.9999
UGGAGGAG	chr17:27417787-27418030(-)$1	243	87	95	18.9999
GGGAGGGG	chr20:34089589-34089878(+)$1	289	224	232	13.4565
UGGAGGAG	chr6:56365776-56366032(-)$1	256	109	117	18.9999
UGGAGGAG	chr16:22358811-22359146(-)$1	335	151	159	18.9999
UGGAGAAG	chr1:21226191-21226484(-)$1	293	173	181	14.8695
gggaggag	chr6:34664394-34664673(-)$1	279	33	41	16.9347
UGGAGGAG	chr6:56391058-56391358(-)$1	300	162	170	18.9999
AGAAGGAG	chr1:39775212-39775468(+)$1	256	208	216	12.2608
UGGAGGAA	chr3:121414125-121414400(-)$1	275	57	65	14.6521
GGGAGGGG	chr14:21853566-21853814(-)$1	248	118	126	13.4565
UGGAGGCG	chr3:184041095-184041361(+)$1	266	21	29	15.1956

#otherMatches

#Struct PSSM
dd22a::d	chr6:56391158-56391418(-)$1	260	222	230	18.9999
nbb22ggg	chr6:56338604-56338874(-)$1	270	81	89	14.6521
oooooeee	chr17:4792845-4793072(+)$1	227	33	41	15.5217
{FFFFFF{	chr9:134615146-134615428(-)$1	282	16	24	13.1304
c]ccc]dd	chr15:93552274-93552555(+)$1	281	271	279	18.9999
!!ccc%%%	chr6:30545797-30546071(+)$1	274	111	119	14.8695
ffffff::	chr3:184040525-184040752(+)$1	227	104	112	14.5434
nnnngggg	chr2:232576565-232576793(+)$1	228	26	34	14.4347
CCC{AKKF	chr20:2638673-2639016(+)$1	343	22	30	16.4999
eee>>>>>	chr3:25650958-25651203(-)$1	245	68	76	14.8695
eee22eee	chr19:5711702-5712021(-)$1	319	28	36	15.1956
IIIIIIII	chr1:220320991-220321255(+)$1	264	89	97	14.5434
{CCCHHHH	chr15:42705296-42705548(-)$1	252	60	68	14.2173
::::::::	chr17:48823068-48823400(+)$1	332	64	72	12.3695
eeeee22d	chr9:134350839-134351133(+)$1	294	167	175	16.9347
a[cccooo	chr4:40154300-40154599(+)$1	299	163	171	16.9347
:EEEEE}H	chr14:31590504-31590735(-)$1	231	116	124	14.7608
nnnnnccc	chr3:184039648-184039870(+)$1	222	81	89	16.4999
a[ccc[cc	chr6:56417785-56418037(-)$1	252	13	21	14.6521
eeeeeeee	chr18:12329450-12329805(-)$1	355	144	152	14.5434
FFFFFFGG	chr2:232577412-232577654(+)$1	242	68	76	15.5217
[bb[dddd	chr1:27105853-27106107(+)$1	254	36	44	14.8695
GG{ALLLA	chr16:27373671-27374044(+)$1	373	116	124	16.4999
dddd]ddd	chr1:19438917-19439129(-)$1	212	75	83	16.9347
JGGGGGGG	chrX:154004412-154004700(+)$1	288	278	286	18.9999
DDDDdddd	chr22:29696008-29696275(+)$1	267	14	22	16.9347
========	chr3:184052845-184053084(+)$1	239	116	124	13.4565
dd22bb22	chr2:153529391-153529656(-)$1	265	122	130	12.6956
c####fff	chr2:48026098-48026376(+)$1	278	82	90	15.1956
ffffff::	chr3:184040553-184040837(+)$1	284	76	84	14.5434
MEEEEEcc	chr17:38278707-38278972(+)$1	265	8	16	15.9565
g[ammmma	chr16:27497275-27497568(-)$1	293	192	200	14.8695
ddd::::E	chr11:129991592-129991806(+)$1	214	46	54	11.9347
EE}FFFFF	chr9:100777543-100777858(+)$1	315	151	159	14.7608
fffff:::	chr5:154172169-154172458(+)$1	289	262	270	18.9999
hhhhhh[b	chr17:27417787-27418030(-)$1	243	87	95	18.9999
dd!!eeee	chr20:34089589-34089878(+)$1	289	224	232	13.4565
mbb:DDDD	chr6:56365776-56366032(-)$1	256	109	117	18.9999
BBFFFFFF	chr16:22358811-22359146(-)$1	335	151	159	18.9999
::::::ff	chr1:21226191-21226484(-)$1	293	173	181	14.8695
qqqqqqqq	chr6:34664394-34664673(-)$1	279	33	41	16.9347
eee]bb]a	chr6:56391058-56391358(-)$1	300	162	170	18.9999
f:::dddd	chr1:39775212-39775468(+)$1	256	208	216	12.2608
IIIIIIII	chr3:121414125-121414400(-)$1	275	57	65	14.6521
eeeeeee]	chr14:21853566-21853814(-)$1	248	118	126	13.4565
dbb[ffff	chr3:184041095-184041361(+)$1	266	21	29	15.1956

#DB
))..)..(	chr6:56391158-56391418(-)$1	1	222	230	18.9999
.))..)))	chr6:56338604-56338874(-)$1	1	81	89	14.6521
.....)))	chr17:4792845-4793072(+)$1	1	33	41	15.5217
.((((((.	chr9:134615146-134615428(-)$1	1	16	24	13.1304
).))).))	chr15:93552274-93552555(+)$1	1	271	279	18.9999
..(((...	chr6:30545797-30546071(+)$1	1	111	119	14.8695
))))))..	chr3:184040525-184040752(+)$1	1	104	112	14.5434
....))))	chr2:232576565-232576793(+)$1	1	26	34	14.4347
(((.(..(	chr20:2638673-2639016(+)$1	1	22	30	16.4999
))).....	chr3:25650958-25651203(-)$1	1	68	76	14.8695
)))..)))	chr19:5711702-5712021(-)$1	1	28	36	15.1956
((((((((	chr1:220320991-220321255(+)$1	1	89	97	14.5434
.(((((((	chr15:42705296-42705548(-)$1	1	60	68	14.2173
........	chr17:48823068-48823400(+)$1	1	64	72	12.3695
)))))..)	chr9:134350839-134351133(+)$1	1	167	175	16.9347
(.(((...	chr4:40154300-40154599(+)$1	1	163	171	16.9347
.))))).)	chr14:31590504-31590735(-)$1	1	116	124	14.7608
.....)))	chr3:184039648-184039870(+)$1	1	81	89	16.4999
(.(((.((	chr6:56417785-56418037(-)$1	1	13	21	14.6521
((((((((	chr18:12329450-12329805(-)$1	1	144	152	14.5434
((((((((	chr2:232577412-232577654(+)$1	1	68	76	15.5217
.((.((((	chr1:27105853-27106107(+)$1	1	36	44	14.8695
((.(...(	chr16:27373671-27374044(+)$1	1	116	124	16.4999
)))).)))	chr1:19438917-19439129(-)$1	1	75	83	16.9347
))))))))	chrX:154004412-154004700(+)$1	1	278	286	18.9999
((((((((	chr22:29696008-29696275(+)$1	1	14	22	16.9347
))))))))	chr3:184052845-184053084(+)$1	1	116	124	13.4565
))..))..	chr2:153529391-153529656(-)$1	1	122	130	12.6956
(....(((	chr2:48026098-48026376(+)$1	1	82	90	15.1956
))))))..	chr3:184040553-184040837(+)$1	1	76	84	14.5434
.(((((((	chr17:38278707-38278972(+)$1	1	8	16	15.9565
(.(....)	chr16:27497275-27497568(-)$1	1	192	200	14.8695
)))....(	chr11:129991592-129991806(+)$1	1	46	54	11.9347
)).)))))	chr9:100777543-100777858(+)$1	1	151	159	14.7608
)))))...	chr5:154172169-154172458(+)$1	1	262	270	18.9999
((((((.(	chr17:27417787-27418030(-)$1	1	87	95	18.9999
((..((((	chr20:34089589-34089878(+)$1	1	224	232	13.4565
.)).))))	chr6:56365776-56366032(-)$1	1	109	117	18.9999
))))))))	chr16:22358811-22359146(-)$1	1	151	159	18.9999
......((	chr1:21226191-21226484(-)$1	1	173	181	14.8695
........	chr6:34664394-34664673(-)$1	1	33	41	16.9347
))).)).)	chr6:56391058-56391358(-)$1	1	162	170	18.9999
)...((((	chr1:39775212-39775468(+)$1	1	208	216	12.2608
((((((((	chr3:121414125-121414400(-)$1	1	57	65	14.6521
))))))).	chr14:21853566-21853814(-)$1	1	118	126	13.4565
)((.((((	chr3:184041095-184041361(+)$1	1	21	29	15.1956

#PSSM
U : 0.60	G : 0.17	A : 0.10	g : 0.04	C : 0.02	a : 0.02	u : 0.02	
G : 0.84	g : 0.08	A : 0.04	C : 0.02	
G : 0.82	g : 0.06	C : 0.06	a : 0.02	A : 0.02	
A : 0.89	a : 0.08	U : 0.02	
G : 0.86	g : 0.06	U : 0.04	a : 0.02	
G : 0.80	g : 0.08	A : 0.04	C : 0.04	a : 0.02	
A : 0.71	G : 0.10	a : 0.08	U : 0.04	c : 0.02	C : 0.02	
G : 0.82	g : 0.10	A : 0.06	

#score	716.1739130434778
#seq	46
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_CDS_m3_run1.nuc.txt

#NT
GGGGUGGC	chr2:232574905-232575147(+)$1	242	4	12	15.9090
GGGGAGGC	chr16:88922704-88922984(-)$1	280	12	20	16.1818
GGGGCGGC	chr19:1469681-1469903(-)$1	222	7	15	20.0000
GGGGCGGG	chr11:639271-639573(+)$1	302	98	106	15.9090
gcggcggc	chr8:145691600-145691906(+)$1	306	268	276	16.0909
GGGGCGGC	chr4:99849994-99850254(-)$1	260	245	253	20.0000
GGGGCCGC	chr19:2270417-2270679(+)$1	262	86	94	15.9090
GGGGCGGC	chr11:66625993-66626255(-)$1	262	196	204	20.0000
GGGGCGGC	chr14:103576291-103576532(+)$1	241	176	184	20.0000
GGGGCGUC	chr1:1181939-1182180(-)$1	241	171	179	15.4545
gcggcggc	chr6:170123777-170124061(-)$1	284	3	11	16.0909
GGGGCGGG	chr8:25315648-25315967(-)$1	319	2	10	15.9090
GGGUCGGC	chr11:66626359-66626599(-)$1	240	92	100	15.5454
GGGGCCGC	chr14:103576589-103576856(+)$1	267	180	188	15.9090
GGGGCUGC	chr21:46918361-46918615(+)$1	254	94	102	15.8181
GGGGCGGC	chr19:1469762-1469998(-)$1	236	102	110	20.0000
AGGGCGGC	chr19:41858836-41859087(+)$1	251	103	111	15.7272
UGGGCGGC	chr15:74725829-74726185(-)$1	356	37	45	15.6363
gcggcggc	chr16:22019507-22019737(+)$1	230	38	46	16.0909
ggggcgga	chr19:1592529-1592784(-)$1	255	7	15	15.8181
GGGGCGGC	chr19:18548470-18548749(-)$1	279	121	129	20.0000
GGGGCGGC	chr14:23992005-23992258(+)$1	253	56	64	20.0000
ggggcagc	chr20:35491128-35491394(-)$1	266	114	122	15.8181
CGGGCGGC	chr19:1467823-1468096(-)$1	273	112	120	15.8181
gcggcggc	chr10:134210677-134210931(+)$1	254	1	9	16.0909
GGGGCGUC	chr1:3447611-3447867(-)$1	256	61	69	15.4545
GGGGCGGC	chr19:58991459-58991696(-)$1	237	106	114	20.0000
GGGGCGAC	chr17:79875862-79876133(-)$1	271	5	13	15.3636
GGGGAGGC	chr19:42720987-42721333(-)$1	346	2	10	16.1818
GGGGAGGC	chr1:150526476-150526730(-)$1	254	110	118	16.1818
GGGGCAGC	chr11:63884556-63884776(-)$1	220	106	114	15.8181
AGGGCGGC	chr15:80215295-80215610(-)$1	315	65	73	15.7272
GGGGCGGC	chr21:47566105-47566337(-)$1	232	0	8	20.0000
GGGGUGGC	chr11:63884305-63884536(-)$1	231	4	12	15.9090
GGGACGGC	chr19:577881-578125(+)$1	244	36	44	15.5454
GGGGCGGU	chr19:18653560-18653839(-)$1	279	17	25	15.8181
GGGGGGGC	chr5:154135275-154135541(+)$1	266	24	32	15.8181
ggggcggC	chr1:976415-976662(+)$1	247	100	108	20.0000
cgggcggc	chr16:84002217-84002502(+)$1	285	10	18	15.8181
CGGGCGGC	chr19:52693357-52693613(+)$1	256	122	130	15.8181
GGGGCGGA	chr1:36788407-36788689(+)$1	282	72	80	15.8181
GGGCCGGC	chr13:114144740-114145035(-)$1	295	20	28	15.7272
ggggcggc	chr21:47565650-47565867(-)$1	217	101	109	20.0000
GUGGCGGC	chr14:23991188-23991485(+)$1	297	85	93	15.8181
gcggcggc	chr6:170123861-170124115(-)$1	254	1	9	16.0909
GGGGCUGC	chr11:68831328-68831610(+)$1	282	137	145	15.8181
ggggaggc	chr11:1770085-1770429(-)$1	344	21	29	16.1818
GGGCCGGC	chr11:61197109-61197348(-)$1	239	11	19	15.7272
GGGGAGGC	chr16:8953038-8953316(+)$1	278	128	136	16.1818
GGGGCCGC	chr17:80696279-80696532(+)$1	253	190	198	15.9090
GGCGCGGC	chr17:79860086-79860313(-)$1	227	40	48	15.1818
GGGCCGGC	chr12:62996789-62997069(+)$1	280	108	116	15.7272
guggcggc	chr16:29818362-29818627(-)$1	265	57	65	15.8181
GGGGCGGU	chr19:58991258-58991565(-)$1	307	257	265	15.8181

#otherMatches

#Struct PSSM
f333gggg	chr22:50723193-50723441(-)$1	248	217	225	15.9090
FFFFMMMM	chr2:232574905-232575147(+)$1	242	4	12	15.9090
C{BB{EEE	chr16:88922704-88922984(-)$1	280	12	20	16.1818
ddd[gggg	chr19:1469681-1469903(-)$1	222	7	15	20.0000
fffffFFF	chr11:639271-639573(+)$1	302	98	106	15.9090
========	chr8:145691600-145691906(+)$1	306	268	276	16.0909
JJJJJJJJ	chr4:99849994-99850254(-)$1	260	245	253	20.0000
cc[bb[ff	chr19:2270417-2270679(+)$1	262	86	94	15.9090
gggggggc	chr11:66625993-66626255(-)$1	262	196	204	20.0000
]bb]eeee	chr14:103576291-103576532(+)$1	241	176	184	20.0000
ccccc]dd	chr1:1181939-1182180(-)$1	241	171	179	15.4545
ee[dddd[	chr6:170123777-170124061(-)$1	284	3	11	16.0909
JJJJJJJJ	chr8:25315648-25315967(-)$1	319	2	10	15.9090
4444ffff	chr11:66626359-66626599(-)$1	240	92	100	15.5454
rrrrrrcc	chr14:103576589-103576856(+)$1	267	180	188	15.9090
dddd4444	chr21:46918361-46918615(+)$1	254	94	102	15.8181
B}BBDDDD	chr19:1469762-1469998(-)$1	236	102	110	20.0000
}BB}DDDD	chr19:41858836-41859087(+)$1	251	103	111	15.7272
:ffffffl	chr15:74725829-74726185(-)$1	356	37	45	15.6363
========	chr16:22019507-22019737(+)$1	230	38	46	16.0909
mma]ccc:	chr19:1592529-1592784(-)$1	255	7	15	15.8181
cccc!!bb	chr19:18548470-18548749(-)$1	279	121	129	20.0000
DDDD{EEE	chr14:23992005-23992258(+)$1	253	56	64	20.0000
EEEEE{BB	chr20:35491128-35491394(-)$1	266	114	122	15.8181
c!!ccc[c	chr19:1467823-1468096(-)$1	273	112	120	15.8181
GGGGGGG{	chr10:134210677-134210931(+)$1	254	1	9	16.0909
FF:ddddd	chr1:3447611-3447867(-)$1	256	61	69	15.4545
ggggg]bb	chr19:58991459-58991696(-)$1	237	106	114	20.0000
A{DDDD{E	chr17:79875862-79876133(-)$1	271	5	13	15.3636
ggggggg#	chr19:42720987-42721333(-)$1	346	2	10	16.1818
cccmmmmc	chr1:150526476-150526730(-)$1	254	110	118	16.1818
dddd]ccc	chr11:63884556-63884776(-)$1	220	106	114	15.8181
22dddd]e	chr15:80215295-80215610(-)$1	315	65	73	15.7272
a[cccmmm	chr21:47566105-47566337(-)$1	232	0	8	20.0000
FFFFFKKB	chr11:63884305-63884536(-)$1	231	4	12	15.9090
HHHHHCCC	chr19:577881-578125(+)$1	244	36	44	15.5454
""a[a[bb	chr19:18653560-18653839(-)$1	279	17	25	15.8181
KKAA{CCC	chr5:154135275-154135541(+)$1	266	24	32	15.8181
eeeee[cc	chr1:976415-976662(+)$1	247	100	108	20.0000
DDDD{HHH	chr16:84002217-84002502(+)$1	285	10	18	15.8181
iiiiiiii	chr19:52693357-52693613(+)$1	256	122	130	15.8181
EEEKKBBF	chr1:36788407-36788689(+)$1	282	72	80	15.8181
a[dddd[b	chr13:114144740-114145035(-)$1	295	20	28	15.7272
[a!!bb[a	chr21:47565650-47565867(-)$1	217	101	109	20.0000
eeeee444	chr14:23991188-23991485(+)$1	297	85	93	15.8181
::ccc[bb	chr6:170123861-170124115(-)$1	254	1	9	16.0909
FFFFF:ee	chr11:68831328-68831610(+)$1	282	137	145	15.8181
h[a!!amm	chr11:1770085-1770429(-)$1	344	21	29	16.1818
HH{EEEEE	chr11:61197109-61197348(-)$1	239	11	19	15.7272
cccccc[h	chr16:8953038-8953316(+)$1	278	128	136	16.1818
YYJJJJJJ	chr17:80696279-80696532(+)$1	253	190	198	15.9090
2eeeeegg	chr17:79860086-79860313(-)$1	227	40	48	15.1818
ffff333a	chr12:62996789-62997069(+)$1	280	108	116	15.7272
bb]ggggg	chr16:29818362-29818627(-)$1	265	57	65	15.8181
ggggoooo	chr19:58991258-58991565(-)$1	307	257	265	15.8181

#DB
)...))))	chr22:50723193-50723441(-)$1	1	217	225	15.9090
((((....	chr2:232574905-232575147(+)$1	1	4	12	15.9090
(.((.(((	chr16:88922704-88922984(-)$1	1	12	20	16.1818
(((.((((	chr19:1469681-1469903(-)$1	1	7	15	20.0000
))))))))	chr11:639271-639573(+)$1	1	98	106	15.9090
))))))))	chr8:145691600-145691906(+)$1	1	268	276	16.0909
))))))))	chr4:99849994-99850254(-)$1	1	245	253	20.0000
((.((.((	chr19:2270417-2270679(+)$1	1	86	94	15.9090
((((((((	chr11:66625993-66626255(-)$1	1	196	204	20.0000
.)).))))	chr14:103576291-103576532(+)$1	1	176	184	20.0000
))))).))	chr1:1181939-1182180(-)$1	1	171	179	15.4545
((.((((.	chr6:170123777-170124061(-)$1	1	3	11	16.0909
((((((((	chr8:25315648-25315967(-)$1	1	2	10	15.9090
....))))	chr11:66626359-66626599(-)$1	1	92	100	15.5454
......))	chr14:103576589-103576856(+)$1	1	180	188	15.9090
))))....	chr21:46918361-46918615(+)$1	1	94	102	15.8181
).))))))	chr19:1469762-1469998(-)$1	1	102	110	20.0000
.)).))))	chr19:41858836-41859087(+)$1	1	103	111	15.7272
.((((((.	chr15:74725829-74726185(-)$1	1	37	45	15.6363
((((((((	chr16:22019507-22019737(+)$1	1	38	46	16.0909
..).))).	chr19:1592529-1592784(-)$1	1	7	15	15.8181
((((..((	chr19:18548470-18548749(-)$1	1	121	129	20.0000
((((.(((	chr14:23992005-23992258(+)$1	1	56	64	20.0000
(((((.((	chr20:35491128-35491394(-)$1	1	114	122	15.8181
(..(((.(	chr19:1467823-1468096(-)$1	1	112	120	15.8181
(((((((.	chr10:134210677-134210931(+)$1	1	1	9	16.0909
((.(((((	chr1:3447611-3447867(-)$1	1	61	69	15.4545
))))).))	chr19:58991459-58991696(-)$1	1	106	114	20.0000
(.((((.(	chr17:79875862-79876133(-)$1	1	5	13	15.3636
(((((((.	chr19:42720987-42721333(-)$1	1	2	10	16.1818
(((....)	chr1:150526476-150526730(-)$1	1	110	118	16.1818
)))).)))	chr11:63884556-63884776(-)$1	1	106	114	15.8181
..)))).)	chr15:80215295-80215610(-)$1	1	65	73	15.7272
(.(((...	chr21:47566105-47566337(-)$1	1	0	8	20.0000
(((((..(	chr11:63884305-63884536(-)$1	1	4	12	15.9090
((((((((	chr19:577881-578125(+)$1	1	36	44	15.5454
..(.(.((	chr19:18653560-18653839(-)$1	1	17	25	15.8181
..((.(((	chr5:154135275-154135541(+)$1	1	24	32	15.8181
(((((.((	chr1:976415-976662(+)$1	1	100	108	20.0000
((((.(((	chr16:84002217-84002502(+)$1	1	10	18	15.8181
((((((((	chr19:52693357-52693613(+)$1	1	122	130	15.8181
(((..(((	chr1:36788407-36788689(+)$1	1	72	80	15.8181
(.((((.(	chr13:114144740-114145035(-)$1	1	20	28	15.7272
.(..((.(	chr21:47565650-47565867(-)$1	1	101	109	20.0000
)))))...	chr14:23991188-23991485(+)$1	1	85	93	15.8181
..(((.((	chr6:170123861-170124115(-)$1	1	1	9	16.0909
(((((.((	chr11:68831328-68831610(+)$1	1	137	145	15.8181
(.(..(..	chr11:1770085-1770429(-)$1	1	21	29	16.1818
((.(((((	chr11:61197109-61197348(-)$1	1	11	19	15.7272
((((((.(	chr16:8953038-8953316(+)$1	1	128	136	16.1818
..))))))	chr17:80696279-80696532(+)$1	1	190	198	15.9090
.)))))((	chr17:79860086-79860313(-)$1	1	40	48	15.1818
))))...)	chr12:62996789-62997069(+)$1	1	108	116	15.7272
)).)))))	chr16:29818362-29818627(-)$1	1	57	65	15.8181
((((....	chr19:58991258-58991565(-)$1	1	257	265	15.8181

#PSSM
G : 0.69	g : 0.20	A : 0.03	C : 0.03	U : 0.01	c : 0.01	
G : 0.76	g : 0.10	c : 0.09	U : 0.01	u : 0.01	
G : 0.76	g : 0.21	C : 0.01	
G : 0.69	g : 0.21	C : 0.05	U : 0.01	A : 0.01	
C : 0.65	c : 0.20	A : 0.07	U : 0.03	G : 0.01	a : 0.01	
G : 0.67	g : 0.20	C : 0.05	U : 0.03	a : 0.01	A : 0.01	
G : 0.72	g : 0.21	U : 0.03	A : 0.01	
C : 0.69	c : 0.18	G : 0.05	U : 0.03	a : 0.01	A : 0.01	

#score	916.9090909090912
#seq	55
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_UTR_m2_run2.nuc.txt

#NT
UCUGCUG	chr22:50685256-50685507(-)$1	251	142	149	13.3571
CCUGCUC	chr2:97526212-97526456(-)$1	244	185	192	13.2142
UCUGCUG	chrX:151121738-151121990(-)$1	252	124	131	13.3571
CCUGAUG	chr12:123467264-123467527(+)$1	263	34	41	13.2857
CCUGAUG	chr6:33383629-33383934(+)$1	305	192	199	13.2857
CCUGCUG	chr16:89662982-89663231(+)$1	249	191	198	17.2857
CAUGCUG	chr20:33432769-33433027(-)$1	258	197	204	12.8571
CGUGCUG	chr17:79877700-79877941(-)$1	241	115	122	12.7857
CCUGCGG	chr16:778878-779142(+)$1	264	198	205	13.2142
CCUGGUG	chr3:128211828-128212071(+)$1	243	93	100	13.3571
CCUGAUG	chr17:80400573-80400867(-)$1	294	124	131	13.2857
ccugcuc	chr14:24105522-24105856(+)$1	334	55	62	13.2142
CCUGUUG	chr19:2270329-2270593(+)$1	264	37	44	13.0714
CCUGCUG	chr2:97525529-97525798(-)$1	269	183	190	17.2857
GCUGCUG	chr19:2426206-2426436(-)$1	230	4	11	13.6428
CCUGCUG	chr11:66394464-66394696(+)$1	232	203	210	17.2857
CCUGGUG	chr19:2232080-2232359(+)$1	279	12	19	13.3571
CAUGCUG	chr7:930551-930797(+)$1	246	77	84	12.8571
CCUGCCG	chr12:125398628-125398884(-)$1	256	238	245	13.1428
ACUGCUG	chr1:155882870-155883117(-)$1	247	3	10	13.2857
CCUGCUU	chr19:5140924-5141198(+)$1	274	6	13	12.9999
UCUGCUG	chrX:151121833-151122178(-)$1	345	312	319	13.3571
CCAGCUG	chr11:62392224-62392471(-)$1	247	117	124	12.9999
CCUUCUG	chr19:1472443-1472696(-)$1	253	3	10	12.5714
CCUGCUA	chr7:142638172-142638499(-)$1	327	308	315	12.9285
CCUCCUG	chr16:1819416-1819790(+)$1	374	341	348	12.6428
ccugcug	chr17:5346188-5346438(-)$1	250	27	34	17.2857
CCUGCUG	chr17:76109122-76109396(-)$1	274	234	241	17.2857
CCUGCUG	chr16:89663168-89663460(+)$1	292	5	12	17.2857
CCUGCCG	chr7:5569351-5569632(-)$1	281	148	155	13.1428
CCUGCUU	chr1:16060981-16061226(+)$1	245	168	175	12.9999
CCUGGUG	chr6:33171733-33172012(+)$1	279	150	157	13.3571
CCUGCUG	chr17:79993818-79994098(-)$1	280	255	262	17.2857
GCUGCUG	chr12:56632208-56632445(-)$1	237	50	57	13.6428
CCUGCUG	chr9:139566817-139567081(+)$1	264	206	213	17.2857
CCUGCGG	chr22:50018406-50018666(-)$1	260	110	117	13.2142
CCUGCUG	chr6:26123583-26123833(-)$1	250	0	7	17.2857
CCAGCUG	chr19:1881810-1882093(-)$1	283	236	243	12.9999
CCUGCUC	chr19:1394978-1395308(+)$1	330	54	61	13.2142
CCUGGUG	chr8:101963115-101963357(-)$1	242	25	32	13.3571
CCUGCUG	chr1:1683934-1684252(-)$1	318	141	148	17.2857
GCUGCUG	chr22:19957805-19958071(-)$1	266	66	73	13.6428
ccugcug	chr16:29708606-29708876(+)$1	270	260	267	17.2857
ccugcug	chr17:5346265-5346537(-)$1	272	126	133	17.2857
CCUGCUC	chr16:67862465-67862731(-)$1	266	223	230	13.2142
CCUGGUG	chr17:79878090-79878339(-)$1	249	109	116	13.3571
CCUGCAG	chr11:294818-295064(+)$1	246	27	34	13.0714
CCUGCUG	chr7:100171055-100171334(-)$1	279	203	210	17.2857
CCUGCUG	chr9:139566911-139567168(+)$1	257	112	119	17.2857
CCUGCGG	chr11:67202551-67202814(+)$1	263	128	135	13.2142
CCUGCUG	chr7:100171653-100171895(-)$1	242	2	9	17.2857
CCAGCUG	chr7:71876957-71877244(-)$1	287	250	257	12.9999
ACUGCUG	chr16:89762121-89762362(+)$1	241	141	148	13.2857
CCAGCUG	chr17:27877931-27878180(+)$1	249	175	182	12.9999
GCUGCUG	chr16:633546-633804(+)$1	258	120	127	13.6428
CCUGCUC	chr2:20821927-20822186(-)$1	259	12	19	13.2142
CCUGCCG	chr7:5569445-5569688(-)$1	243	204	211	13.1428
CCUGAUG	chr11:252679-252983(+)$1	304	77	84	13.2857
CCUGCGG	chr19:18547582-18547850(-)$1	268	260	267	13.2142
CCUCCUG	chr6:31641141-31641394(+)$1	253	9	16	12.6428
CGUGCUG	chr21:46935184-46935420(-)$1	236	12	19	12.7857
CCUGCUG	chr22:20099911-20100163(-)$1	252	213	220	17.2857
CCUGCAG	chr11:64011358-64011599(+)$1	241	18	25	13.0714
CCAGCUG	chr19:55741369-55741628(-)$1	259	139	146	12.9999
CCUGCUG	chr19:1815410-1815679(-)$1	269	93	100	17.2857
GCUGCUG	chr20:31172459-31172781(-)$1	322	103	110	13.6428
CCUGCUG	chr16:89663276-89663518(+)$1	242	223	230	17.2857
GCUGCUG	chr16:723642-723889(+)$1	247	8	15	13.6428
CAUGCUG	chr11:62382708-62383000(-)$1	292	186	193	12.8571

#otherMatches

#Struct PSSM
ddddddd	chr11:612016-612303(+)$1	287	151	158	13.6428
fff[ccc	chr22:50685256-50685507(-)$1	251	142	149	13.3571
##bb"""	chr2:97526212-97526456(-)$1	244	185	192	13.2142
FF:eeee	chrX:151121738-151121990(-)$1	252	124	131	13.3571
"""bbee	chr12:123467264-123467527(+)$1	263	34	41	13.2857
ddmmmmd	chr6:33383629-33383934(+)$1	305	192	199	13.2857
:::HHHH	chr16:89662982-89663231(+)$1	249	191	198	17.2857
DDD}HHH	chr20:33432769-33433027(-)$1	258	197	204	12.8571
Cbb[bbc	chr17:79877700-79877941(-)$1	241	115	122	12.7857
]ccc]gg	chr16:778878-779142(+)$1	264	198	205	13.2142
fJJJJJJ	chr3:128211828-128212071(+)$1	243	93	100	13.3571
dddd:::	chr17:80400573-80400867(-)$1	294	124	131	13.2857
6eeeee3	chr14:24105522-24105856(+)$1	334	55	62	13.2142
EEEE{DD	chr19:2270329-2270593(+)$1	264	37	44	13.0714
ccvvvvv	chr2:97525529-97525798(-)$1	269	183	190	17.2857
dddmmmm	chr19:2426206-2426436(-)$1	230	4	11	13.6428
DYYBB}D	chr11:66394464-66394696(+)$1	232	203	210	17.2857
cc[dddd	chr19:2232080-2232359(+)$1	279	12	19	13.3571
cc]ccc:	chr7:930551-930797(+)$1	246	77	84	12.8571
ffffmmm	chr12:125398628-125398884(-)$1	256	238	245	13.1428
::CCC{C	chr1:155882870-155883117(-)$1	247	3	10	13.2857
HHHHHLL	chr19:5140924-5141198(+)$1	274	6	13	12.9999
~~DDDD}	chrX:151121833-151122178(-)$1	345	312	319	13.3571
gggggg]	chr11:62392224-62392471(-)$1	247	117	124	12.9999
:IIIIII	chr19:1472443-1472696(-)$1	253	3	10	12.5714
FFFFF}E	chr7:142638172-142638499(-)$1	327	308	315	12.9285
JJJZZZC	chr16:1819416-1819790(+)$1	374	341	348	12.6428
d]hhhhh	chr17:5346188-5346438(-)$1	250	27	34	17.2857
ccmmmmc	chr17:76109122-76109396(-)$1	274	234	241	17.2857
LBBKKEE	chr16:89663168-89663460(+)$1	292	5	12	17.2857
cc!!eee	chr7:5569351-5569632(-)$1	281	148	155	13.1428
:::gggg	chr1:16060981-16061226(+)$1	245	168	175	12.9999
nnnccc2	chr6:33171733-33172012(+)$1	279	150	157	13.3571
}FFFFFF	chr17:79993818-79994098(-)$1	280	255	262	17.2857
CCC{BB{	chr12:56632208-56632445(-)$1	237	50	57	13.6428
ennnnne	chr9:139566817-139567081(+)$1	264	206	213	17.2857
ffFFFFF	chr22:50018406-50018666(-)$1	260	110	117	13.2142
:::EEEE	chr6:26123583-26123833(-)$1	250	0	7	17.2857
icccnnn	chr19:1881810-1882093(-)$1	283	236	243	12.9999
e[eeeee	chr19:1394978-1395308(+)$1	330	54	61	13.2142
ggsssss	chr8:101963115-101963357(-)$1	242	25	32	13.3571
ggggggg	chr1:1683934-1684252(-)$1	318	141	148	17.2857
cccccc]	chr22:19957805-19958071(-)$1	266	66	73	13.6428
:::DDDD	chr16:29708606-29708876(+)$1	270	260	267	17.2857
CCC::dd	chr17:5346265-5346537(-)$1	272	126	133	17.2857
]ccc]bb	chr16:67862465-67862731(-)$1	266	223	230	13.2142
DDDDDDZ	chr17:79878090-79878339(-)$1	249	109	116	13.3571
NNBBKKB	chr11:294818-295064(+)$1	246	27	34	13.0714
=======	chr7:100171055-100171334(-)$1	279	203	210	17.2857
IIIIIII	chr9:139566911-139567168(+)$1	257	112	119	17.2857
d[ccc[c	chr11:67202551-67202814(+)$1	263	128	135	13.2142
ffff[bb	chr7:100171653-100171895(-)$1	242	2	9	17.2857
t======	chr7:71876957-71877244(-)$1	287	250	257	12.9999
{DDDD{C	chr16:89762121-89762362(+)$1	241	141	148	13.2857
ooooccc	chr17:27877931-27878180(+)$1	249	175	182	12.9999
hhhhhh[	chr16:633546-633804(+)$1	258	120	127	13.6428
IFFFFFF	chr2:20821927-20822186(-)$1	259	12	19	13.2142
44cccgg	chr7:5569445-5569688(-)$1	243	204	211	13.1428
dddd333	chr11:252679-252983(+)$1	304	77	84	13.2857
hhhhhhh	chr19:18547582-18547850(-)$1	268	260	267	13.2142
:::::::	chr6:31641141-31641394(+)$1	253	9	16	12.6428
qqqqqdd	chr21:46935184-46935420(-)$1	236	12	19	12.7857
fffqqqq	chr22:20099911-20100163(-)$1	252	213	220	17.2857
LLFFFFF	chr11:64011358-64011599(+)$1	241	18	25	13.0714
NNNHHHH	chr19:55741369-55741628(-)$1	259	139	146	12.9999
nnnnddd	chr19:1815410-1815679(-)$1	269	93	100	17.2857
5bb]iii	chr20:31172459-31172781(-)$1	322	103	110	13.6428
FFFYYDD	chr16:89663276-89663518(+)$1	242	223	230	17.2857
BB{BBJJ	chr16:723642-723889(+)$1	247	8	15	13.6428
gggggg]	chr11:62382708-62383000(-)$1	292	186	193	12.8571

#DB
)))((((	chr11:612016-612303(+)$1	1	151	158	13.6428
(((.(((	chr22:50685256-50685507(-)$1	1	142	149	13.3571
..((...	chr2:97526212-97526456(-)$1	1	185	192	13.2142
((.((((	chrX:151121738-151121990(-)$1	1	124	131	13.3571
...((((	chr12:123467264-123467527(+)$1	1	34	41	13.2857
((....)	chr6:33383629-33383934(+)$1	1	192	199	13.2857
...))))	chr16:89662982-89663231(+)$1	1	191	198	17.2857
))).)))	chr20:33432769-33433027(-)$1	1	197	204	12.8571
)((.(((	chr17:79877700-79877941(-)$1	1	115	122	12.7857
.))).))	chr16:778878-779142(+)$1	1	198	205	13.2142
)))))))	chr3:128211828-128212071(+)$1	1	93	100	13.3571
))))...	chr17:80400573-80400867(-)$1	1	124	131	13.2857
.))))).	chr14:24105522-24105856(+)$1	1	55	62	13.2142
((((.((	chr19:2270329-2270593(+)$1	1	37	44	13.0714
((.....	chr2:97525529-97525798(-)$1	1	183	190	17.2857
(((....	chr19:2426206-2426436(-)$1	1	4	11	13.6428
)..)).)	chr11:66394464-66394696(+)$1	1	203	210	17.2857
((.((((	chr19:2232080-2232359(+)$1	1	12	19	13.3571
)).))).	chr7:930551-930797(+)$1	1	77	84	12.8571
((((...	chr12:125398628-125398884(-)$1	1	238	245	13.1428
..(((.(	chr1:155882870-155883117(-)$1	1	3	10	13.2857
(((((..	chr19:5140924-5141198(+)$1	1	6	13	12.9999
..)))).	chrX:151121833-151122178(-)$1	1	312	319	13.3571
)))))).	chr11:62392224-62392471(-)$1	1	117	124	12.9999
.((((((	chr19:1472443-1472696(-)$1	1	3	10	12.5714
))))).)	chr7:142638172-142638499(-)$1	1	308	315	12.9285
)))...)	chr16:1819416-1819790(+)$1	1	341	348	12.6428
).)))))	chr17:5346188-5346438(-)$1	1	27	34	17.2857
((....)	chr17:76109122-76109396(-)$1	1	234	241	17.2857
.((..((	chr16:89663168-89663460(+)$1	1	5	12	17.2857
((..(((	chr7:5569351-5569632(-)$1	1	148	155	13.1428
...((((	chr1:16060981-16061226(+)$1	1	168	175	12.9999
...))).	chr6:33171733-33172012(+)$1	1	150	157	13.3571
.))))))	chr17:79993818-79994098(-)$1	1	255	262	17.2857
(((.((.	chr12:56632208-56632445(-)$1	1	50	57	13.6428
(.....)	chr9:139566817-139567081(+)$1	1	206	213	17.2857
)))))))	chr22:50018406-50018666(-)$1	1	110	117	13.2142
...((((	chr6:26123583-26123833(-)$1	1	0	7	17.2857
((((...	chr19:1881810-1882093(-)$1	1	236	243	12.9999
(.(((((	chr19:1394978-1395308(+)$1	1	54	61	13.2142
((.....	chr8:101963115-101963357(-)$1	1	25	32	13.3571
(((((((	chr1:1683934-1684252(-)$1	1	141	148	17.2857
)))))).	chr22:19957805-19958071(-)$1	1	66	73	13.6428
...))))	chr16:29708606-29708876(+)$1	1	260	267	17.2857
(((..((	chr17:5346265-5346537(-)$1	1	126	133	17.2857
.))).))	chr16:67862465-67862731(-)$1	1	223	230	13.2142
)))))).	chr17:79878090-79878339(-)$1	1	109	116	13.3571
..((..(	chr11:294818-295064(+)$1	1	27	34	13.0714
)))))))	chr7:100171055-100171334(-)$1	1	203	210	17.2857
(((((((	chr9:139566911-139567168(+)$1	1	112	119	17.2857
(.(((.(	chr11:67202551-67202814(+)$1	1	128	135	13.2142
((((.((	chr7:100171653-100171895(-)$1	1	2	9	17.2857
.))))))	chr7:71876957-71877244(-)$1	1	250	257	12.9999
.((((.(	chr16:89762121-89762362(+)$1	1	141	148	13.2857
....)))	chr17:27877931-27878180(+)$1	1	175	182	12.9999
((((((.	chr16:633546-633804(+)$1	1	120	127	13.6428
(((((((	chr2:20821927-20822186(-)$1	1	12	19	13.2142
..)))))	chr7:5569445-5569688(-)$1	1	204	211	13.1428
))))...	chr11:252679-252983(+)$1	1	77	84	13.2857
)))))))	chr19:18547582-18547850(-)$1	1	260	267	13.2142
.......	chr6:31641141-31641394(+)$1	1	9	16	12.6428
.....))	chr21:46935184-46935420(-)$1	1	12	19	12.7857
(((....	chr22:20099911-20100163(-)$1	1	213	220	17.2857
..(((((	chr11:64011358-64011599(+)$1	1	18	25	13.0714
...((((	chr19:55741369-55741628(-)$1	1	139	146	12.9999
....)))	chr19:1815410-1815679(-)$1	1	93	100	17.2857
.)).)))	chr20:31172459-31172781(-)$1	1	103	110	13.6428
)))..))	chr16:89663276-89663518(+)$1	1	223	230	17.2857
((.((((	chr16:723642-723889(+)$1	1	8	15	13.6428
)))))).	chr11:62382708-62383000(-)$1	1	186	193	12.8571

#PSSM
C : 0.77	G : 0.10	c : 0.05	U : 0.04	A : 0.02	
C : 0.87	c : 0.05	A : 0.04	G : 0.02	
U : 0.87	A : 0.07	u : 0.05	
G : 0.89	g : 0.05	C : 0.02	U : 0.01	
C : 0.79	G : 0.07	A : 0.05	c : 0.05	U : 0.01	
U : 0.81	G : 0.05	u : 0.05	C : 0.04	A : 0.02	
G : 0.84	C : 0.05	g : 0.04	U : 0.02	c : 0.01	A : 0.01	

#score	996.7142857142838
#seq	70
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_UTR_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
dd::::::::::::eeeee####eeeee[bb[ddddnnnnnddd	chr17:8076801-8077006(-)$1	205	144	188	132.0000

#DB
))............(((((....(((((.((.((((.....)))	chr17:8076801-8077006(-)$1	1	144	188	132.0000

#PSSM
a : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	

#score	132.0
#seq	1
#width	44
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_transcript_m2_run2.nuc.txt

#NT
UUAUUUUUC	chr12:66223804-66224087(+)$1	283	108	117	19.2500
UUUUUUUUU	chr9:2827016-2827265(-)$1	249	95	104	16.7500
UCAUUUUUA	chr20:17956188-17956491(+)$1	303	35	44	15.1666
UUAUUUUUU	chr2:203964232-203964482(+)$1	250	25	34	20.5833
UUAUUUUGA	chr9:136230634-136230898(-)$1	264	229	238	14.8333
UUAUUUUUC	chr17:38323523-38323778(+)$1	255	89	98	19.2500
uuauuuuuc	chr5:73202518-73202770(+)$1	252	189	198	19.2500
UUAUUUUUA	chr10:21959244-21959541(+)$1	297	8	17	19.3333
UUAGUUUUG	chr15:51830144-51830434(-)$1	290	87	96	14.4166
UUAUUUUUC	chrX:76776436-76776700(-)$1	264	251	260	19.2500
UUAUUUUCU	chr17:37441662-37441935(-)$1	273	82	91	16.0000
UUAUUUCUU	chr4:22402312-22402576(-)$1	264	79	88	16.6666
uuauuuuua	chr10:97915555-97915830(+)$1	275	220	229	19.3333
UUAUUUUUU	chr1:31460348-31460622(-)$1	274	210	219	20.5833
UUGUUUUUU	chr12:93817981-93818269(-)$1	288	75	84	16.7500
UUAUAUUUC	chr16:2807670-2807910(+)$1	240	73	82	14.9166
uuauuuuua	chr8:8099735-8099992(+)$1	257	68	77	19.3333
UUAAUUUUU	chr2:32724461-32724758(+)$1	297	77	86	16.5833
UAAUUUUUA	chr10:20121409-20121678(+)$1	269	83	92	15.2500
UUAAUUUUA	chr12:70906854-70907112(+)$1	258	93	102	15.3333
CUAUUUUUA	chr3:45748645-45748896(+)$1	251	128	137	14.6666
UUGUUUUUG	chr15:70985867-70986140(-)$1	273	43	52	14.6666
UAAUUUUUU	chr6:170858200-170858485(-)$1	285	93	102	16.5000
uuauuuauu	chr8:129010307-129010610(+)$1	303	266	275	16.5000
UUAUUGUUU	chr13:103301305-103301553(+)$1	248	45	54	15.9166
UUAUUUCUU	chr4:39514909-39515193(-)$1	284	105	114	16.6666
UUUUUUUUC	chr6:151239597-151239844(+)$1	247	89	98	15.4166
UAAUUUUUU	chr18:43705726-43705978(+)$1	252	45	54	16.5000
UUAUUUAUA	chr6:16754919-16755169(-)$1	250	82	91	15.2500
uuauuuuuC	chr3:39110139-39110419(+)$1	280	248	257	19.2500
CUAUUUUUU	chr3:194158175-194158420(-)$1	245	88	97	15.9166
UUCUUUUUA	chr6:91269771-91270054(-)$1	283	91	100	15.3333
UUAUUUUGU	chr1:15858444-15858752(+)$1	308	241	250	16.0833
UUAUUUCUU	chr20:13798227-13798504(+)$1	277	97	106	16.6666
UUAGUUUUU	chr1:87368984-87369244(-)$1	260	24	33	16.5000
UAAUUUUUU	chr3:12346909-12347169(+)$1	260	147	156	16.5000
UUAUUUUUU	chr10:123685908-123686159(-)$1	251	43	52	20.5833
UUAUAUUUC	chr11:34475242-34475504(+)$1	262	86	95	14.9166
UCAUUUUUU	chr18:9924049-9924274(+)$1	225	82	91	16.4166
uuguuuuuu	chr11:85341602-85341867(+)$1	265	56	65	16.7500
UCAUUUUUU	chr2:44139626-44139860(-)$1	234	134	143	16.4166
uuauuuuau	chr6:37822278-37822533(+)$1	255	145	154	16.0000
UUAAUUUUU	chr11:70323216-70323462(-)$1	246	112	121	16.5833
UUUUUUUUU	chr2:242207962-242208234(-)$1	272	109	118	16.7500
UUAUUUUUG	chr8:62586322-62586609(-)$1	287	53	62	18.5000
UUAUUUAUU	chr18:12481586-12481844(-)$1	258	144	153	16.5000
UUAUCUUUG	chr3:93691717-93691978(-)$1	261	104	113	14.0833
UUAGUUUUA	chr5:134125768-134126031(+)$1	263	76	85	15.2500
UUUUUUUUC	chr2:55792216-55792467(-)$1	251	108	117	15.4166
UUGUUUUUA	chr15:80137653-80137901(-)$1	248	5	14	15.5000
UUAUUUCUU	chr6:30595125-30595390(+)$1	265	90	99	16.6666
UUAUAUUUC	chr13:41513584-41513844(-)$1	260	114	123	14.9166
UUAUUUUUA	chr11:118888360-118888634(-)$1	274	177	186	19.3333
UUAAUUUUA	chr12:70906924-70907167(+)$1	243	23	32	15.3333
UUCUUUUUU	chr11:66432896-66433165(-)$1	269	8	17	16.5833
UUAUCUUUC	chr3:9511970-9512228(+)$1	258	70	79	14.8333
uuauuuuuu	chr12:56998448-56998753(-)$1	305	23	32	20.5833
UUACUUUUC	chr16:89608530-89608783(+)$1	253	60	69	15.0000
UUAUUUCUC	chr6:134495572-134495842(-)$1	270	94	103	15.3333

#otherMatches

#Struct PSSM
::::::HHH	chr2:190334689-190334954(+)$1	265	84	93	15.9166
5eeeee333	chr12:66223804-66224087(+)$1	283	108	117	19.2500
eee$$$$$d	chr9:2827016-2827265(-)$1	249	95	104	16.7500
{GGGGGGGM	chr20:17956188-17956491(+)$1	303	35	44	15.1666
b[ffffff"	chr2:203964232-203964482(+)$1	250	25	34	20.5833
::::::ddd	chr9:136230634-136230898(-)$1	264	229	238	14.8333
22dddd:::	chr17:38323523-38323778(+)$1	255	89	98	19.2500
vvvvvvvvv	chr5:73202518-73202770(+)$1	252	189	198	19.2500
ddddfffff	chr10:21959244-21959541(+)$1	297	8	17	19.3333
44dddd:::	chr15:51830144-51830434(-)$1	290	87	96	14.4166
??FFFFFF}	chrX:76776436-76776700(-)$1	264	251	260	19.2500
&&&&&bb!!	chr17:37441662-37441935(-)$1	273	82	91	16.0000
ttttttttt	chr4:22402312-22402576(-)$1	264	79	88	16.6666
D}EEEEE__	chr10:97915555-97915830(+)$1	275	220	229	19.3333
ggsssssss	chr1:31460348-31460622(-)$1	274	210	219	20.5833
sssssssss	chr12:93817981-93818269(-)$1	288	75	84	16.7500
yyyyyyyyy	chr16:2807670-2807910(+)$1	240	73	82	14.9166
^^^^^^^^^	chr8:8099735-8099992(+)$1	257	68	77	19.3333
rrrrrffff	chr2:32724461-32724758(+)$1	297	77	86	16.5833
:::::::::	chr10:20121409-20121678(+)$1	269	83	92	15.2500
^^^^^^^^^	chr12:70906854-70907112(+)$1	258	93	102	15.3333
>>>>>>>>>	chr3:45748645-45748896(+)$1	251	128	137	14.6666
gggggg::D	chr15:70985867-70986140(-)$1	273	43	52	14.6666
:::::::::	chr6:170858200-170858485(-)$1	285	93	102	16.5000
:::::::::	chr8:129010307-129010610(+)$1	303	266	275	16.5000
ffffffccc	chr13:103301305-103301553(+)$1	248	45	54	15.9166
c22dddd]d	chr4:39514909-39515193(-)$1	284	105	114	16.6666
EE}FFFFFF	chr6:151239597-151239844(+)$1	247	89	98	15.4166
c::::::::	chr18:43705726-43705978(+)$1	252	45	54	16.5000
:::::::::	chr6:16754919-16755169(-)$1	250	82	91	15.2500
@@@@@@@@@	chr3:39110139-39110419(+)$1	280	248	257	19.2500
dd$$$$$cc	chr3:194158175-194158420(-)$1	245	88	97	15.9166
WWWWFFFFF	chr6:91269771-91270054(-)$1	283	91	100	15.3333
!!cccoooo	chr1:15858444-15858752(+)$1	308	241	250	16.0833
$$$hhhhhh	chr20:13798227-13798504(+)$1	277	97	106	16.6666
oooccc333	chr1:87368984-87369244(-)$1	260	24	33	16.5000
c''''''''	chr3:12346909-12347169(+)$1	260	147	156	16.5000
:::::::::	chr10:123685908-123686159(-)$1	251	43	52	20.5833
cc]bb4444	chr11:34475242-34475504(+)$1	262	86	95	14.9166
dd(((((((	chr18:9924049-9924274(+)$1	225	82	91	16.4166
99999999e	chr11:85341602-85341867(+)$1	265	56	65	16.7500
ddd000000	chr2:44139626-44139860(-)$1	234	134	143	16.4166
333iiiiii	chr6:37822278-37822533(+)$1	255	145	154	16.0000
+++++++++	chr11:70323216-70323462(-)$1	246	112	121	16.5833
ggggggrrr	chr2:242207962-242208234(-)$1	272	109	118	16.7500
[iiiiiiii	chr8:62586322-62586609(-)$1	287	53	62	18.5000
qqqqqqqqc	chr18:12481586-12481844(-)$1	258	144	153	16.5000
iiii"""cc	chr3:93691717-93691978(-)$1	261	104	113	14.0833
ee[bb[ddd	chr5:134125768-134126031(+)$1	263	76	85	15.2500
:::::::::	chr2:55792216-55792467(-)$1	251	108	117	15.4166
ggggggg!!	chr15:80137653-80137901(-)$1	248	5	14	15.5000
JJJJJJJ{C	chr6:30595125-30595390(+)$1	265	90	99	16.6666
:::::::::	chr13:41513584-41513844(-)$1	260	114	123	14.9166
iiiiiiiii	chr11:118888360-118888634(-)$1	274	177	186	19.3333
:::::::::	chr12:70906924-70907167(+)$1	243	23	32	15.3333
====$$$$$	chr11:66432896-66433165(-)$1	269	8	17	16.5833
:::::::::	chr3:9511970-9512228(+)$1	258	70	79	14.8333
:::::::::	chr12:56998448-56998753(-)$1	305	23	32	20.5833
^^^^^^^^^	chr16:89608530-89608783(+)$1	253	60	69	15.0000
::::hhhhh	chr6:134495572-134495842(-)$1	270	94	103	15.3333

#DB
......(((	chr2:190334689-190334954(+)$1	1	84	93	15.9166
.)))))...	chr12:66223804-66224087(+)$1	1	108	117	19.2500
(((.....(	chr9:2827016-2827265(-)$1	1	95	104	16.7500
.(((((((.	chr20:17956188-17956491(+)$1	1	35	44	15.1666
(.((((((.	chr2:203964232-203964482(+)$1	1	25	34	20.5833
......(((	chr9:136230634-136230898(-)$1	1	229	238	14.8333
..))))...	chr17:38323523-38323778(+)$1	1	89	98	19.2500
.........	chr5:73202518-73202770(+)$1	1	189	198	19.2500
(((((((((	chr10:21959244-21959541(+)$1	1	8	17	19.3333
..))))...	chr15:51830144-51830434(-)$1	1	87	96	14.4166
..)))))).	chrX:76776436-76776700(-)$1	1	251	260	19.2500
.....((..	chr17:37441662-37441935(-)$1	1	82	91	16.0000
.........	chr4:22402312-22402576(-)$1	1	79	88	16.6666
).)))))..	chr10:97915555-97915830(+)$1	1	220	229	19.3333
((.......	chr1:31460348-31460622(-)$1	1	210	219	20.5833
.........	chr12:93817981-93818269(-)$1	1	75	84	16.7500
.........	chr16:2807670-2807910(+)$1	1	73	82	14.9166
.........	chr8:8099735-8099992(+)$1	1	68	77	19.3333
.....))))	chr2:32724461-32724758(+)$1	1	77	86	16.5833
.........	chr10:20121409-20121678(+)$1	1	83	92	15.2500
.........	chr12:70906854-70907112(+)$1	1	93	102	15.3333
.........	chr3:45748645-45748896(+)$1	1	128	137	14.6666
))))))..)	chr15:70985867-70986140(-)$1	1	43	52	14.6666
.........	chr6:170858200-170858485(-)$1	1	93	102	16.5000
.........	chr8:129010307-129010610(+)$1	1	266	275	16.5000
)))))))))	chr13:103301305-103301553(+)$1	1	45	54	15.9166
)..)))).)	chr4:39514909-39515193(-)$1	1	105	114	16.6666
)).))))))	chr6:151239597-151239844(+)$1	1	89	98	15.4166
)........	chr18:43705726-43705978(+)$1	1	45	54	16.5000
.........	chr6:16754919-16755169(-)$1	1	82	91	15.2500
.........	chr3:39110139-39110419(+)$1	1	248	257	19.2500
((.....((	chr3:194158175-194158420(-)$1	1	88	97	15.9166
....(((((	chr6:91269771-91270054(-)$1	1	91	100	15.3333
..(((....	chr1:15858444-15858752(+)$1	1	241	250	16.0833
...((((((	chr20:13798227-13798504(+)$1	1	97	106	16.6666
...)))...	chr1:87368984-87369244(-)$1	1	24	33	16.5000
(........	chr3:12346909-12347169(+)$1	1	147	156	16.5000
.........	chr10:123685908-123686159(-)$1	1	43	52	20.5833
)).))....	chr11:34475242-34475504(+)$1	1	86	95	14.9166
((.......	chr18:9924049-9924274(+)$1	1	82	91	16.4166
........)	chr11:85341602-85341867(+)$1	1	56	65	16.7500
)))......	chr2:44139626-44139860(-)$1	1	134	143	16.4166
...))))))	chr6:37822278-37822533(+)$1	1	145	154	16.0000
.........	chr11:70323216-70323462(-)$1	1	112	121	16.5833
((((((...	chr2:242207962-242208234(-)$1	1	109	118	16.7500
.((((((((	chr8:62586322-62586609(-)$1	1	53	62	18.5000
........)	chr18:12481586-12481844(-)$1	1	144	153	16.5000
((((...((	chr3:93691717-93691978(-)$1	1	104	113	14.0833
((.((.(((	chr5:134125768-134126031(+)$1	1	76	85	15.2500
.........	chr2:55792216-55792467(-)$1	1	108	117	15.4166
(((((((..	chr15:80137653-80137901(-)$1	1	5	14	15.5000
(((((((.(	chr6:30595125-30595390(+)$1	1	90	99	16.6666
.........	chr13:41513584-41513844(-)$1	1	114	123	14.9166
)))))))))	chr11:118888360-118888634(-)$1	1	177	186	19.3333
.........	chr12:70906924-70907167(+)$1	1	23	32	15.3333
((((.....	chr11:66432896-66433165(-)$1	1	8	17	16.5833
.........	chr3:9511970-9512228(+)$1	1	70	79	14.8333
.........	chr12:56998448-56998753(-)$1	1	23	32	20.5833
.........	chr16:89608530-89608783(+)$1	1	60	69	15.0000
....(((((	chr6:134495572-134495842(-)$1	1	94	103	15.3333

#PSSM
U : 0.83	u : 0.13	C : 0.03	
U : 0.75	u : 0.13	A : 0.06	C : 0.05	
A : 0.71	a : 0.11	U : 0.06	G : 0.05	C : 0.03	g : 0.01	
U : 0.73	u : 0.13	A : 0.06	G : 0.05	C : 0.01	
U : 0.78	u : 0.13	A : 0.05	C : 0.03	
U : 0.83	u : 0.13	G : 0.03	
U : 0.75	u : 0.11	C : 0.08	A : 0.03	a : 0.01	
U : 0.81	u : 0.11	G : 0.03	C : 0.01	a : 0.01	
U : 0.41	C : 0.19	A : 0.19	G : 0.06	u : 0.06	a : 0.03	c : 0.01	

#score	1001.333333333334
#seq	60
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_CDS_m3_run1.nuc.txt

#NT
GGCGCGG	chr19:1008639-1008931(-)$1	292	61	68	13.0714
CGGGCGG	chrX:41193774-41194026(+)$1	252	27	34	13.3571
GGGGUGG	chr19:56614059-56614353(-)$1	294	253	260	13.2142
GGGGUGG	chr11:63884306-63884551(-)$1	245	19	26	13.2142
GGGGCAG	chr19:577717-577961(+)$1	244	98	105	13.0714
GGGGCGG	chr18:3452012-3452309(+)$1	297	29	36	17.0714
cgggcgg	chr16:81348624-81348892(+)$1	268	1	8	13.3571
GGGGCGG	chr17:27224484-27224745(-)$1	261	207	214	17.0714
GGGGCGG	chr1:230203001-230203252(+)$1	251	102	109	17.0714
GUGGCGG	chr5:60628324-60628571(+)$1	247	27	34	13.0714
UGGGCGG	chr20:32251547-32251822(-)$1	275	126	133	12.9999
gcggcgg	chr9:80646047-80646324(-)$1	277	22	29	13.0714
GUGGCGG	chr4:1805303-1805542(+)$1	239	10	17	13.0714
GGGGCGG	chr2:153575034-153575306(+)$1	272	48	55	17.0714
GGGGAGG	chr11:63884767-63885020(-)$1	253	15	22	13.0714
GGGGCGG	chr19:541044-541307(+)$1	263	37	44	17.0714
GGGGCAG	chr20:62518749-62519036(+)$1	287	33	40	13.0714
ggagcgg	chr16:47177416-47177702(-)$1	286	49	56	12.9999
AGGGCGG	chr19:1467821-1468078(-)$1	257	52	59	12.9999
GGGGCGG	chr5:154135284-154135539(+)$1	255	18	25	17.0714
GGUGCGG	chr17:79679324-79679578(+)$1	254	4	11	12.9999
GGGGCGG	chr5:138629688-138629911(+)$1	223	150	157	17.0714
GUGGCGG	chr2:241496663-241496950(-)$1	287	40	47	13.0714
GCGGCGG	chr1:247094375-247094626(-)$1	251	0	7	13.0714
GGGGCGG	chr19:1467414-1467654(-)$1	240	58	65	17.0714
ggcgcgg	chr20:57581853-57582178(-)$1	325	2	9	13.0714
GAGGCGG	chr10:135207607-135207905(+)$1	298	54	61	12.9285
GCGGCGG	chr19:59073433-59073704(+)$1	271	59	66	13.0714
GGGGCGG	chr6:3259135-3259452(+)$1	317	113	120	17.0714
GGGCCGG	chr12:62996855-62997115(+)$1	260	42	49	12.6428
GGGGCGG	chr1:32827552-32827792(-)$1	240	18	25	17.0714
CGGGCGG	chr7:1498714-1498969(-)$1	255	204	211	13.3571
GUGGCGG	chr7:127669376-127669642(+)$1	266	123	130	13.0714
ggggccg	chr8:66753527-66753835(-)$1	308	36	43	12.9999
UGGGCGG	chr19:36526216-36526512(+)$1	296	36	43	12.9999
AGGGCGG	chr16:89043042-89043353(-)$1	311	277	284	12.9999
GGUGCGG	chr19:2811949-2812266(+)$1	317	36	43	12.9999
GGGCCGG	chr7:5460700-5460940(-)$1	240	24	31	12.6428
GGGGAGG	chrX:41193694-41193956(+)$1	262	116	123	13.0714
CGGGCGG	chr7:1498799-1499049(-)$1	250	16	23	13.3571
GGGGCGG	chr2:131113634-131113909(+)$1	275	98	105	17.0714
GGGGAGG	chr15:80215085-80215345(-)$1	260	5	12	13.0714
ggcgcgg	chr11:637292-637538(+)$1	246	55	62	13.0714
GAGGCGG	chr1:6266640-6266910(-)$1	270	141	148	12.9285
GGGGCGG	chr17:7476697-7476955(+)$1	258	197	204	17.0714
GGGGCAG	chr11:3012333-3012573(-)$1	240	108	115	13.0714
GGGGCUG	chr16:50342178-50342532(+)$1	354	104	111	12.9999
GCGGCGG	chr1:26146934-26147219(+)$1	285	81	88	13.0714
GGGGUGG	chr17:7476912-7477183(+)$1	271	12	19	13.2142
GGGGUGG	chr19:2425966-2426218(-)$1	252	58	65	13.2142
GGGGCCG	chr19:798419-798763(+)$1	344	187	194	12.9999
GGGGUGG	chr20:32251307-32251550(-)$1	243	216	223	13.2142
GGGGCGG	chr19:58991260-58991563(-)$1	303	255	262	17.0714
GGGGUGG	chr21:46520767-46521033(+)$1	266	96	103	13.2142
GGGGCCG	chr22:18256213-18256483(-)$1	270	71	78	12.9999
ggggcug	chr22:50016908-50017159(-)$1	251	49	56	12.9999
ggggcgg	chr22:50639810-50640059(+)$1	249	216	223	17.0714
GGUGCGG	chr3:5229417-5229701(+)$1	284	10	17	12.9999
GGGGAGG	chr22:50016817-50017059(-)$1	242	113	120	13.0714
GGAGCGG	chr9:139756693-139756948(-)$1	255	47	54	12.9999
CGGGCGG	chr13:114144719-114145012(-)$1	293	11	18	13.3571
cgggcgg	chr10:70481118-70481409(+)$1	291	33	40	13.3571
GGCGCGG	chr16:4664674-4664937(-)$1	263	14	21	13.0714
CGGGCGG	chr11:66393977-66394232(+)$1	255	120	127	13.3571
GGGGCUG	chr22:50639488-50639722(+)$1	234	114	121	12.9999
GGGGCGG	chr16:88772584-88772848(-)$1	264	8	15	17.0714
GGGCCGG	chr2:219265483-219265726(+)$1	243	67	74	12.6428
GGGCCGG	chr1:228329197-228329466(+)$1	269	98	105	12.6428
GGAGCGG	chr4:1804658-1804922(+)$1	264	38	45	12.9999

#otherMatches

#Struct PSSM
bb22ddd	chr7:127670519-127670770(+)$1	251	33	40	13.0714
ggggggg	chr19:1008639-1008931(-)$1	292	61	68	13.0714
ALLLDDD	chrX:41193774-41194026(+)$1	252	27	34	13.3571
gggg]dd	chr19:56614059-56614353(-)$1	294	253	260	13.2142
NNA{DDD	chr11:63884306-63884551(-)$1	245	19	26	13.2142
DEEEEEG	chr19:577717-577961(+)$1	244	98	105	13.0714
cceeeee	chr18:3452012-3452309(+)$1	297	29	36	17.0714
EEEEEBB	chr16:81348624-81348892(+)$1	268	1	8	13.3571
:::eeee	chr17:27224484-27224745(-)$1	261	207	214	17.0714
gggggcc	chr1:230203001-230203252(+)$1	251	102	109	17.0714
wwwwwww	chr5:60628324-60628571(+)$1	247	27	34	13.0714
:CCCFFF	chr20:32251547-32251822(-)$1	275	126	133	12.9999
ffffffb	chr9:80646047-80646324(-)$1	277	22	29	13.0714
HHHffff	chr4:1805303-1805542(+)$1	239	10	17	13.0714
bb[hhhh	chr2:153575034-153575306(+)$1	272	48	55	17.0714
ddddqqq	chr11:63884767-63885020(-)$1	253	15	22	13.0714
bbbb[ee	chr19:541044-541307(+)$1	263	37	44	17.0714
ffCCC{D	chr20:62518749-62519036(+)$1	287	33	40	13.0714
FF{BBbb	chr16:47177416-47177702(-)$1	286	49	56	12.9999
GGGGG{B	chr19:1467821-1468078(-)$1	257	52	59	12.9999
A{CCC{E	chr5:154135284-154135539(+)$1	255	18	25	17.0714
HHHHH{F	chr17:79679324-79679578(+)$1	254	4	11	12.9999
ff"""bb	chr5:138629688-138629911(+)$1	223	150	157	17.0714
JJJJJJ:	chr2:241496663-241496950(-)$1	287	40	47	13.0714
::bb[a!	chr1:247094375-247094626(-)$1	251	0	7	13.0714
ggggg:F	chr19:1467414-1467654(-)$1	240	58	65	17.0714
FFFFFF{	chr20:57581853-57582178(-)$1	325	2	9	13.0714
ffffff!	chr10:135207607-135207905(+)$1	298	54	61	12.9285
]eeeeea	chr19:59073433-59073704(+)$1	271	59	66	13.0714
ggggggd	chr6:3259135-3259452(+)$1	317	113	120	17.0714
ffff::c	chr12:62996855-62997115(+)$1	260	42	49	12.6428
3ddddCC	chr1:32827552-32827792(-)$1	240	18	25	17.0714
ddd22ff	chr7:1498714-1498969(-)$1	255	204	211	13.3571
CCCCCC}	chr7:127669376-127669642(+)$1	266	123	130	13.0714
dddd22b	chr8:66753527-66753835(-)$1	308	36	43	12.9999
hhhhh!!	chr19:36526216-36526512(+)$1	296	36	43	12.9999
ncccbbc	chr16:89043042-89043353(-)$1	311	277	284	12.9999
bb[a[bb	chr19:2811949-2812266(+)$1	317	36	43	12.9999
JJJJJJJ	chr7:5460700-5460940(-)$1	240	24	31	12.6428
a]eeeee	chrX:41193694-41193956(+)$1	262	116	123	13.0714
nneeeee	chr7:1498799-1499049(-)$1	250	16	23	13.3571
dddd!!g	chr2:131113634-131113909(+)$1	275	98	105	17.0714
ggg$$$$	chr15:80215085-80215345(-)$1	260	5	12	13.0714
}BB}DDD	chr11:637292-637538(+)$1	246	55	62	13.0714
hhhhhee	chr1:6266640-6266910(-)$1	270	141	148	12.9285
EEEYYDD	chr17:7476697-7476955(+)$1	258	197	204	17.0714
DDDD:EE	chr11:3012333-3012573(-)$1	240	108	115	13.0714
ggggg[b	chr16:50342178-50342532(+)$1	354	104	111	12.9999
gggggdd	chr1:26146934-26147219(+)$1	285	81	88	13.0714
FFF{DDD	chr17:7476912-7477183(+)$1	271	12	19	13.2142
eeeffff	chr19:2425966-2426218(-)$1	252	58	65	13.2142
}HHHHHH	chr19:798419-798763(+)$1	344	187	194	12.9999
eeEEEEE	chr20:32251307-32251550(-)$1	243	216	223	13.2142
ggggooo	chr19:58991260-58991563(-)$1	303	255	262	17.0714
bb:::FF	chr21:46520767-46521033(+)$1	266	96	103	13.2142
hhhhhhh	chr22:18256213-18256483(-)$1	270	71	78	12.9999
Jeeeee[	chr22:50016908-50017159(-)$1	251	49	56	12.9999
CC}BB}C	chr22:50639810-50640059(+)$1	249	216	223	17.0714
DD{CCC{	chr3:5229417-5229701(+)$1	284	10	17	12.9999
b[eeeee	chr22:50016817-50017059(-)$1	242	113	120	13.0714
]eeeee]	chr9:139756693-139756948(-)$1	255	47	54	12.9999
Biiiiii	chr13:114144719-114145012(-)$1	293	11	18	13.3571
HHHHHHH	chr10:70481118-70481409(+)$1	291	33	40	13.3571
NBB{EEE	chr16:4664674-4664937(-)$1	263	14	21	13.0714
eeebbcc	chr11:66393977-66394232(+)$1	255	120	127	13.3571
ee[a!!g	chr22:50639488-50639722(+)$1	234	114	121	12.9999
cccccc[	chr16:88772584-88772848(-)$1	264	8	15	17.0714
22a]hhh	chr2:219265483-219265726(+)$1	243	67	74	12.6428
a[ddddr	chr1:228329197-228329466(+)$1	269	98	105	12.6428
BDDDDCC	chr4:1804658-1804922(+)$1	264	38	45	12.9999

#DB
))..)))	chr7:127670519-127670770(+)$1	1	33	40	13.0714
)))))))	chr19:1008639-1008931(-)$1	1	61	68	13.0714
(...(((	chrX:41193774-41194026(+)$1	1	27	34	13.3571
)))).))	chr19:56614059-56614353(-)$1	1	253	260	13.2142
..(.(((	chr11:63884306-63884551(-)$1	1	19	26	13.2142
))))))(	chr19:577717-577961(+)$1	1	98	105	13.0714
(((((((	chr18:3452012-3452309(+)$1	1	29	36	17.0714
(((((((	chr16:81348624-81348892(+)$1	1	1	8	13.3571
...((((	chr17:27224484-27224745(-)$1	1	207	214	17.0714
)))))((	chr1:230203001-230203252(+)$1	1	102	109	17.0714
.......	chr5:60628324-60628571(+)$1	1	27	34	13.0714
.))))))	chr20:32251547-32251822(-)$1	1	126	133	12.9999
(((((((	chr9:80646047-80646324(-)$1	1	22	29	13.0714
(((((((	chr4:1805303-1805542(+)$1	1	10	17	13.0714
((.((((	chr2:153575034-153575306(+)$1	1	48	55	17.0714
((((...	chr11:63884767-63885020(-)$1	1	15	22	13.0714
((((.((	chr19:541044-541307(+)$1	1	37	44	17.0714
))(((.(	chr20:62518749-62519036(+)$1	1	33	40	13.0714
((.((((	chr16:47177416-47177702(-)$1	1	49	56	12.9999
(((((.(	chr19:1467821-1468078(-)$1	1	52	59	12.9999
(.(((.(	chr5:154135284-154135539(+)$1	1	18	25	17.0714
(((((.(	chr17:79679324-79679578(+)$1	1	4	11	12.9999
((...((	chr5:138629688-138629911(+)$1	1	150	157	17.0714
((((((.	chr2:241496663-241496950(-)$1	1	40	47	13.0714
..((.(.	chr1:247094375-247094626(-)$1	1	0	7	13.0714
))))).(	chr19:1467414-1467654(-)$1	1	58	65	17.0714
((((((.	chr20:57581853-57582178(-)$1	1	2	9	13.0714
((((((.	chr10:135207607-135207905(+)$1	1	54	61	12.9285
.))))))	chr19:59073433-59073704(+)$1	1	59	66	13.0714
)))))))	chr6:3259135-3259452(+)$1	1	113	120	17.0714
))))..(	chr12:62996855-62997115(+)$1	1	42	49	12.6428
.))))((	chr1:32827552-32827792(-)$1	1	18	25	17.0714
)))..))	chr7:1498714-1498969(-)$1	1	204	211	13.3571
)))))).	chr7:127669376-127669642(+)$1	1	123	130	13.0714
))))..)	chr8:66753527-66753835(-)$1	1	36	43	12.9999
(((((..	chr19:36526216-36526512(+)$1	1	36	43	12.9999
.)))(((	chr16:89043042-89043353(-)$1	1	277	284	12.9999
((.(.((	chr19:2811949-2812266(+)$1	1	36	43	12.9999
(((((((	chr7:5460700-5460940(-)$1	1	24	31	12.6428
).)))))	chrX:41193694-41193956(+)$1	1	116	123	13.0714
..)))))	chr7:1498799-1499049(-)$1	1	16	23	13.3571
((((..(	chr2:131113634-131113909(+)$1	1	98	105	17.0714
(((....	chr15:80215085-80215345(-)$1	1	5	12	13.0714
.)).)))	chr11:637292-637538(+)$1	1	55	62	13.0714
)))))((	chr1:6266640-6266910(-)$1	1	141	148	12.9285
)))..))	chr17:7476697-7476955(+)$1	1	197	204	17.0714
)))).((	chr11:3012333-3012573(-)$1	1	108	115	13.0714
(((((.(	chr16:50342178-50342532(+)$1	1	104	111	12.9999
)))))))	chr1:26146934-26147219(+)$1	1	81	88	13.0714
(((.(((	chr17:7476912-7477183(+)$1	1	12	19	13.2142
)))))))	chr19:2425966-2426218(-)$1	1	58	65	13.2142
.))))))	chr19:798419-798763(+)$1	1	187	194	12.9999
)))))))	chr20:32251307-32251550(-)$1	1	216	223	13.2142
((((...	chr19:58991260-58991563(-)$1	1	255	262	17.0714
))...((	chr21:46520767-46521033(+)$1	1	96	103	13.2142
(((((((	chr22:18256213-18256483(-)$1	1	71	78	12.9999
((((((.	chr22:50016908-50017159(-)$1	1	49	56	12.9999
)).)).)	chr22:50639810-50640059(+)$1	1	216	223	17.0714
((.(((.	chr3:5229417-5229701(+)$1	1	10	17	12.9999
(.(((((	chr22:50016817-50017059(-)$1	1	113	120	13.0714
.))))).	chr9:139756693-139756948(-)$1	1	47	54	12.9999
(((((((	chr13:114144719-114145012(-)$1	1	11	18	13.3571
(((((((	chr10:70481118-70481409(+)$1	1	33	40	13.3571
.((.(((	chr16:4664674-4664937(-)$1	1	14	21	13.0714
(((((((	chr11:66393977-66394232(+)$1	1	120	127	13.3571
((.(..(	chr22:50639488-50639722(+)$1	1	114	121	12.9999
)))(((.	chr16:88772584-88772848(-)$1	1	8	15	17.0714
..).)))	chr2:219265483-219265726(+)$1	1	67	74	12.6428
(.((((.	chr1:228329197-228329466(+)$1	1	98	105	12.6428
(((((((	chr4:1804658-1804922(+)$1	1	38	45	12.9999

#PSSM
G : 0.74	g : 0.10	C : 0.07	c : 0.02	U : 0.02	A : 0.02	
G : 0.74	g : 0.11	U : 0.05	C : 0.04	A : 0.02	c : 0.01	
G : 0.77	g : 0.08	U : 0.04	C : 0.02	c : 0.02	A : 0.02	a : 0.01	
G : 0.81	g : 0.12	C : 0.05	
C : 0.72	c : 0.12	U : 0.08	A : 0.05	
G : 0.75	g : 0.10	A : 0.05	U : 0.02	C : 0.02	c : 0.01	u : 0.01	
G : 0.87	g : 0.12	

#score	974.714285714285
#seq	70
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_UTR_m3_run1.nuc.txt

#NT
CUG	chr1:8074176-8074417(-)$1	241	146	149	8.9999
CUG	chr7:72985047-72985322(-)$1	275	9	12	8.9999
CUG	chr20:377273-377510(+)$1	237	1	4	8.9999
CUG	chr6:143382249-143382494(+)$1	245	49	52	8.9999
CUG	chr11:74976544-74976799(-)$1	255	19	22	8.9999
CUG	chr1:11982340-11982626(-)$1	286	8	11	8.9999
CUG	chr1:8073362-8073599(-)$1	237	1	4	8.9999
CUG	chr5:141693350-141693593(-)$1	243	37	40	8.9999
CUG	chr6:64286491-64286747(+)$1	256	48	51	8.9999
CUG	chr1:55315310-55315539(-)$1	229	33	36	8.9999
CUG	chr6:32940062-32940285(+)$1	223	52	55	8.9999
CUG	chr3:196675185-196675459(-)$1	274	3	6	8.9999
CUG	chr12:121439347-121439605(+)$1	258	0	3	8.9999
CUG	chr12:76423595-76423816(-)$1	221	57	60	8.9999
CUG	chr16:1988769-1989033(-)$1	264	65	68	8.9999
CUG	chr3:49052732-49052992(+)$1	260	4	7	8.9999
CUG	chr17:71281363-71281617(-)$1	254	82	85	8.9999
CUG	chr10:88854235-88854481(-)$1	246	4	7	8.9999
CUG	chr16:24551579-24551832(+)$1	253	16	19	8.9999
cug	chr14:24105835-24106064(+)$1	229	43	46	8.9999
CUG	chr21:36260456-36260725(-)$1	269	42	45	8.9999
CUG	chr16:70433159-70433459(-)$1	300	11	14	8.9999
CUG	chr12:14923559-14923839(-)$1	280	91	94	8.9999
CUG	chr16:46962936-46963192(+)$1	256	32	35	8.9999
CUG	chr19:11242349-11242582(+)$1	233	27	30	8.9999
CUG	chr3:49049842-49050122(+)$1	280	38	41	8.9999
CUG	chr7:72984558-72984804(-)$1	246	8	11	8.9999
CUG	chr12:46766260-46766493(-)$1	233	96	99	8.9999
CUG	chr6:36567654-36567934(+)$1	280	42	45	8.9999
CUG	chr9:19380086-19380328(-)$1	242	35	38	8.9999
CUG	chr2:20647918-20648160(+)$1	242	7	10	8.9999
CUG	chr3:49051051-49051277(+)$1	226	10	13	8.9999
CUG	chr19:5831178-5831426(-)$1	248	18	21	8.9999
CUG	chr7:148700617-148700858(-)$1	241	12	15	8.9999
CUG	chr8:126445574-126445835(+)$1	261	32	35	8.9999
CUG	chr7:39989962-39990197(+)$1	235	0	3	8.9999
CUG	chr16:74486666-74486941(-)$1	275	9	12	8.9999
CUG	chr7:39989913-39990162(+)$1	249	49	52	8.9999
CUG	chr10:74034849-74035081(+)$1	232	2	5	8.9999
CUG	chr3:186506963-186507216(+)$1	253	3	6	8.9999
CUG	chr6:11213503-11213758(-)$1	255	15	18	8.9999
CUG	chr20:44519032-44519273(-)$1	241	81	84	8.9999
CUG	chr17:80015960-80016210(-)$1	250	47	50	8.9999
CUG	chrX:38664773-38665093(+)$1	320	58	61	8.9999
CUG	chr19:11242069-11242334(+)$1	265	15	18	8.9999
CUG	chr7:72984466-72984711(-)$1	245	0	3	8.9999
CUG	chr1:8073939-8074199(-)$1	260	16	19	8.9999
CUG	chr10:5023922-5024168(+)$1	246	16	19	8.9999
CUG	chr6:32940343-32940599(+)$1	256	33	36	8.9999
CUG	chr16:89629412-89629651(+)$1	239	45	48	8.9999
CUG	chr2:171574040-171574257(+)$1	217	14	17	8.9999
cug	chr14:24105527-24105793(+)$1	266	28	31	8.9999
CUG	chr6:43473425-43473666(+)$1	241	50	53	8.9999
CUG	chr17:74733228-74733492(-)$1	264	69	72	8.9999
CUG	chr3:71008020-71008273(-)$1	253	8	11	8.9999
CUG	chr17:56065372-56065652(-)$1	280	53	56	8.9999
CUG	chr2:128620812-128621174(-)$1	362	77	80	8.9999
CUG	chr2:20647991-20648212(+)$1	221	12	15	8.9999
CUG	chr5:176524749-176524995(+)$1	246	27	30	8.9999
CUG	chr13:52549092-52549388(-)$1	296	22	25	8.9999
CUG	chr1:40041484-40041752(-)$1	268	23	26	8.9999
CUG	chr13:113536990-113537292(+)$1	302	24	27	8.9999
CUG	chr2:20648337-20648610(+)$1	273	40	43	8.9999
CUG	chr3:129369705-129369966(-)$1	261	0	3	8.9999
CUG	chr4:17625291-17625601(+)$1	310	82	85	8.9999
CUG	chr19:56166191-56166434(+)$1	243	8	11	8.9999
CUG	chr1:155106517-155106762(+)$1	245	5	8	8.9999
cug	chr11:71146050-71146334(-)$1	284	20	23	8.9999
CUG	chr1:8073808-8074061(-)$1	253	49	52	8.9999
CUG	chr3:152881012-152881283(+)$1	271	6	9	8.9999
CUG	chr3:49051310-49051545(+)$1	235	48	51	8.9999
CUG	chr9:84303515-84303779(-)$1	264	38	41	8.9999
CUG	chr11:82868371-82868657(+)$1	286	77	80	8.9999
CUG	chr14:21167459-21167759(+)$1	300	31	34	8.9999
CUG	chr17:79517481-79517749(-)$1	268	1	4	8.9999
CUG	chr6:30558300-30558583(+)$1	283	11	14	8.9999
CUG	chr6:30711433-30711681(-)$1	248	30	33	8.9999
CUG	chr22:31741476-31741756(-)$1	280	7	10	8.9999
CUG	chr20:22562008-22562252(-)$1	244	43	46	8.9999
CUG	chr2:171573839-171574061(+)$1	222	34	37	8.9999
CUG	chr16:11348487-11348740(-)$1	253	14	17	8.9999
CUG	chr17:44248417-44248659(-)$1	242	11	14	8.9999
CUG	chr10:133784016-133784291(-)$1	275	83	86	8.9999
CUG	chr20:48808458-48808739(+)$1	281	21	24	8.9999
CUG	chr12:109994524-109994803(-)$1	279	39	42	8.9999
CUG	chr6:15246607-15246900(+)$1	293	10	13	8.9999
CUG	chr9:94172881-94173166(-)$1	285	14	17	8.9999
CUG	chr17:74307481-74307738(-)$1	257	18	21	8.9999
CUG	chr6:1312835-1313087(+)$1	252	34	37	8.9999
CUG	chr15:45459726-45460015(-)$1	289	33	36	8.9999
CUG	chr2:238483279-238483521(-)$1	242	23	26	8.9999
cug	chr16:30615303-30615549(-)$1	246	71	74	8.9999
CUG	chr19:15348942-15349225(-)$1	283	34	37	8.9999

#otherMatches

#Struct PSSM
iii	chr19:46389037-46389293(-)$1	256	50	53	8.9999
c]c	chr1:8074176-8074417(-)$1	241	146	149	8.9999
hhh	chr7:72985047-72985322(-)$1	275	9	12	8.9999
DDD	chr20:377273-377510(+)$1	237	1	4	8.9999
]==	chr6:143382249-143382494(+)$1	245	49	52	8.9999
:::	chr11:74976544-74976799(-)$1	255	19	22	8.9999
KKB	chr1:11982340-11982626(-)$1	286	8	11	8.9999
:::	chr1:8073362-8073599(-)$1	237	1	4	8.9999
===	chr5:141693350-141693593(-)$1	243	37	40	8.9999
fff	chr6:64286491-64286747(+)$1	256	48	51	8.9999
:DD	chr1:55315310-55315539(-)$1	229	33	36	8.9999
::c	chr6:32940062-32940285(+)$1	223	52	55	8.9999
::d	chr3:196675185-196675459(-)$1	274	3	6	8.9999
:cc	chr12:121439347-121439605(+)$1	258	0	3	8.9999
CRR	chr12:76423595-76423816(-)$1	221	57	60	8.9999
ccn	chr16:1988769-1989033(-)$1	264	65	68	8.9999
::=	chr3:49052732-49052992(+)$1	260	4	7	8.9999
mmm	chr17:71281363-71281617(-)$1	254	82	85	8.9999
DDK	chr10:88854235-88854481(-)$1	246	4	7	8.9999
nnn	chr16:24551579-24551832(+)$1	253	16	19	8.9999
uuf	chr14:24105835-24106064(+)$1	229	43	46	8.9999
JJJ	chr21:36260456-36260725(-)$1	269	42	45	8.9999
CCC	chr16:70433159-70433459(-)$1	300	11	14	8.9999
ccc	chr12:14923559-14923839(-)$1	280	91	94	8.9999
d[b	chr16:46962936-46963192(+)$1	256	32	35	8.9999
ddd	chr19:11242349-11242582(+)$1	233	27	30	8.9999
ppd	chr3:49049842-49050122(+)$1	280	38	41	8.9999
ppp	chr7:72984558-72984804(-)$1	246	8	11	8.9999
h!!	chr12:46766260-46766493(-)$1	233	96	99	8.9999
22d	chr6:36567654-36567934(+)$1	280	42	45	8.9999
###	chr9:19380086-19380328(-)$1	242	35	38	8.9999
FFF	chr2:20647918-20648160(+)$1	242	7	10	8.9999
dnn	chr3:49051051-49051277(+)$1	226	10	13	8.9999
[cc	chr19:5831178-5831426(-)$1	248	18	21	8.9999
iii	chr7:148700617-148700858(-)$1	241	12	15	8.9999
:cc	chr8:126445574-126445835(+)$1	261	32	35	8.9999
:::	chr7:39989962-39990197(+)$1	235	0	3	8.9999
:::	chr16:74486666-74486941(-)$1	275	9	12	8.9999
ba[	chr7:39989913-39990162(+)$1	249	49	52	8.9999
:::	chr10:74034849-74035081(+)$1	232	2	5	8.9999
::f	chr3:186506963-186507216(+)$1	253	3	6	8.9999
===	chr6:11213503-11213758(-)$1	255	15	18	8.9999
ddd	chr20:44519032-44519273(-)$1	241	81	84	8.9999
ccc	chr17:80015960-80016210(-)$1	250	47	50	8.9999
iii	chrX:38664773-38665093(+)$1	320	58	61	8.9999
ee[	chr19:11242069-11242334(+)$1	265	15	18	8.9999
::G	chr7:72984466-72984711(-)$1	245	0	3	8.9999
DDD	chr1:8073939-8074199(-)$1	260	16	19	8.9999
dd[	chr10:5023922-5024168(+)$1	246	16	19	8.9999
eee	chr6:32940343-32940599(+)$1	256	33	36	8.9999
ggg	chr16:89629412-89629651(+)$1	239	45	48	8.9999
[ee	chr2:171574040-171574257(+)$1	217	14	17	8.9999
fff	chr14:24105527-24105793(+)$1	266	28	31	8.9999
hhh	chr6:43473425-43473666(+)$1	241	50	53	8.9999
ddb	chr17:74733228-74733492(-)$1	264	69	72	8.9999
EEE	chr3:71008020-71008273(-)$1	253	8	11	8.9999
d]e	chr17:56065372-56065652(-)$1	280	53	56	8.9999
ooo	chr2:128620812-128621174(-)$1	362	77	80	8.9999
hhh	chr2:20647991-20648212(+)$1	221	12	15	8.9999
NNH	chr5:176524749-176524995(+)$1	246	27	30	8.9999
e!!	chr13:52549092-52549388(-)$1	296	22	25	8.9999
mmm	chr1:40041484-40041752(-)$1	268	23	26	8.9999
fff	chr13:113536990-113537292(+)$1	302	24	27	8.9999
iii	chr2:20648337-20648610(+)$1	273	40	43	8.9999
:::	chr3:129369705-129369966(-)$1	261	0	3	8.9999
dd[	chr4:17625291-17625601(+)$1	310	82	85	8.9999
JJJ	chr19:56166191-56166434(+)$1	243	8	11	8.9999
:cc	chr1:155106517-155106762(+)$1	245	5	8	8.9999
F{B	chr11:71146050-71146334(-)$1	284	20	23	8.9999
eee	chr1:8073808-8074061(-)$1	253	49	52	8.9999
LLC	chr3:152881012-152881283(+)$1	271	6	9	8.9999
eee	chr3:49051310-49051545(+)$1	235	48	51	8.9999
KKC	chr9:84303515-84303779(-)$1	264	38	41	8.9999
fff	chr11:82868371-82868657(+)$1	286	77	80	8.9999
EEE	chr14:21167459-21167759(+)$1	300	31	34	8.9999
CCg	chr17:79517481-79517749(-)$1	268	1	4	8.9999
ggg	chr6:30558300-30558583(+)$1	283	11	14	8.9999
ggg	chr6:30711433-30711681(-)$1	248	30	33	8.9999
dd[	chr22:31741476-31741756(-)$1	280	7	10	8.9999
mmc	chr20:22562008-22562252(-)$1	244	43	46	8.9999
ddd	chr2:171573839-171574061(+)$1	222	34	37	8.9999
EEK	chr16:11348487-11348740(-)$1	253	14	17	8.9999
fff	chr17:44248417-44248659(-)$1	242	11	14	8.9999
''e	chr10:133784016-133784291(-)$1	275	83	86	8.9999
RRB	chr20:48808458-48808739(+)$1	281	21	24	8.9999
ggg	chr12:109994524-109994803(-)$1	279	39	42	8.9999
ppp	chr6:15246607-15246900(+)$1	293	10	13	8.9999
CC{	chr9:94172881-94173166(-)$1	285	14	17	8.9999
fff	chr17:74307481-74307738(-)$1	257	18	21	8.9999
===	chr6:1312835-1313087(+)$1	252	34	37	8.9999
E{F	chr15:45459726-45460015(-)$1	289	33	36	8.9999
#gg	chr2:238483279-238483521(-)$1	242	23	26	8.9999
ee]	chr16:30615303-30615549(-)$1	246	71	74	8.9999
b[d	chr19:15348942-15349225(-)$1	283	34	37	8.9999

#DB
(((	chr19:46389037-46389293(-)$1	1	50	53	8.9999
).)	chr1:8074176-8074417(-)$1	1	146	149	8.9999
(((	chr7:72985047-72985322(-)$1	1	9	12	8.9999
(((	chr20:377273-377510(+)$1	1	1	4	8.9999
.))	chr6:143382249-143382494(+)$1	1	49	52	8.9999
...	chr11:74976544-74976799(-)$1	1	19	22	8.9999
..(	chr1:11982340-11982626(-)$1	1	8	11	8.9999
...	chr1:8073362-8073599(-)$1	1	1	4	8.9999
)))	chr5:141693350-141693593(-)$1	1	37	40	8.9999
)))	chr6:64286491-64286747(+)$1	1	48	51	8.9999
.((	chr1:55315310-55315539(-)$1	1	33	36	8.9999
..(	chr6:32940062-32940285(+)$1	1	52	55	8.9999
..(	chr3:196675185-196675459(-)$1	1	3	6	8.9999
.((	chr12:121439347-121439605(+)$1	1	0	3	8.9999
(..	chr12:76423595-76423816(-)$1	1	57	60	8.9999
((.	chr16:1988769-1989033(-)$1	1	65	68	8.9999
..(	chr3:49052732-49052992(+)$1	1	4	7	8.9999
...	chr17:71281363-71281617(-)$1	1	82	85	8.9999
((.	chr10:88854235-88854481(-)$1	1	4	7	8.9999
...	chr16:24551579-24551832(+)$1	1	16	19	8.9999
..)	chr14:24105835-24106064(+)$1	1	43	46	8.9999
(((	chr21:36260456-36260725(-)$1	1	42	45	8.9999
(((	chr16:70433159-70433459(-)$1	1	11	14	8.9999
(((	chr12:14923559-14923839(-)$1	1	91	94	8.9999
(.(	chr16:46962936-46963192(+)$1	1	32	35	8.9999
)))	chr19:11242349-11242582(+)$1	1	27	30	8.9999
..)	chr3:49049842-49050122(+)$1	1	38	41	8.9999
...	chr7:72984558-72984804(-)$1	1	8	11	8.9999
(..	chr12:46766260-46766493(-)$1	1	96	99	8.9999
..)	chr6:36567654-36567934(+)$1	1	42	45	8.9999
...	chr9:19380086-19380328(-)$1	1	35	38	8.9999
(((	chr2:20647918-20648160(+)$1	1	7	10	8.9999
(..	chr3:49051051-49051277(+)$1	1	10	13	8.9999
.((	chr19:5831178-5831426(-)$1	1	18	21	8.9999
(((	chr7:148700617-148700858(-)$1	1	12	15	8.9999
.((	chr8:126445574-126445835(+)$1	1	32	35	8.9999
...	chr7:39989962-39990197(+)$1	1	0	3	8.9999
...	chr16:74486666-74486941(-)$1	1	9	12	8.9999
((.	chr7:39989913-39990162(+)$1	1	49	52	8.9999
...	chr10:74034849-74035081(+)$1	1	2	5	8.9999
..(	chr3:186506963-186507216(+)$1	1	3	6	8.9999
(((	chr6:11213503-11213758(-)$1	1	15	18	8.9999
(((	chr20:44519032-44519273(-)$1	1	81	84	8.9999
)))	chr17:80015960-80016210(-)$1	1	47	50	8.9999
(((	chrX:38664773-38665093(+)$1	1	58	61	8.9999
((.	chr19:11242069-11242334(+)$1	1	15	18	8.9999
..(	chr7:72984466-72984711(-)$1	1	0	3	8.9999
(((	chr1:8073939-8074199(-)$1	1	16	19	8.9999
((.	chr10:5023922-5024168(+)$1	1	16	19	8.9999
(((	chr6:32940343-32940599(+)$1	1	33	36	8.9999
(((	chr16:89629412-89629651(+)$1	1	45	48	8.9999
.((	chr2:171574040-171574257(+)$1	1	14	17	8.9999
(((	chr14:24105527-24105793(+)$1	1	28	31	8.9999
)))	chr6:43473425-43473666(+)$1	1	50	53	8.9999
(((	chr17:74733228-74733492(-)$1	1	69	72	8.9999
(((	chr3:71008020-71008273(-)$1	1	8	11	8.9999
).)	chr17:56065372-56065652(-)$1	1	53	56	8.9999
...	chr2:128620812-128621174(-)$1	1	77	80	8.9999
(((	chr2:20647991-20648212(+)$1	1	12	15	8.9999
..(	chr5:176524749-176524995(+)$1	1	27	30	8.9999
(..	chr13:52549092-52549388(-)$1	1	22	25	8.9999
...	chr1:40041484-40041752(-)$1	1	23	26	8.9999
(((	chr13:113536990-113537292(+)$1	1	24	27	8.9999
(((	chr2:20648337-20648610(+)$1	1	40	43	8.9999
...	chr3:129369705-129369966(-)$1	1	0	3	8.9999
((.	chr4:17625291-17625601(+)$1	1	82	85	8.9999
(((	chr19:56166191-56166434(+)$1	1	8	11	8.9999
.((	chr1:155106517-155106762(+)$1	1	5	8	8.9999
(.(	chr11:71146050-71146334(-)$1	1	20	23	8.9999
(((	chr1:8073808-8074061(-)$1	1	49	52	8.9999
..(	chr3:152881012-152881283(+)$1	1	6	9	8.9999
)))	chr3:49051310-49051545(+)$1	1	48	51	8.9999
..(	chr9:84303515-84303779(-)$1	1	38	41	8.9999
)))	chr11:82868371-82868657(+)$1	1	77	80	8.9999
(((	chr14:21167459-21167759(+)$1	1	31	34	8.9999
(((	chr17:79517481-79517749(-)$1	1	1	4	8.9999
(((	chr6:30558300-30558583(+)$1	1	11	14	8.9999
)))	chr6:30711433-30711681(-)$1	1	30	33	8.9999
((.	chr22:31741476-31741756(-)$1	1	7	10	8.9999
..)	chr20:22562008-22562252(-)$1	1	43	46	8.9999
(((	chr2:171573839-171574061(+)$1	1	34	37	8.9999
((.	chr16:11348487-11348740(-)$1	1	14	17	8.9999
(((	chr17:44248417-44248659(-)$1	1	11	14	8.9999
..(	chr10:133784016-133784291(-)$1	1	83	86	8.9999
..(	chr20:48808458-48808739(+)$1	1	21	24	8.9999
(((	chr12:109994524-109994803(-)$1	1	39	42	8.9999
...	chr6:15246607-15246900(+)$1	1	10	13	8.9999
((.	chr9:94172881-94173166(-)$1	1	14	17	8.9999
(((	chr17:74307481-74307738(-)$1	1	18	21	8.9999
(((	chr6:1312835-1313087(+)$1	1	34	37	8.9999
(.(	chr15:45459726-45460015(-)$1	1	33	36	8.9999
.((	chr2:238483279-238483521(-)$1	1	23	26	8.9999
)).	chr16:30615303-30615549(-)$1	1	71	74	8.9999
(.(	chr19:15348942-15349225(-)$1	1	34	37	8.9999

#PSSM
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	

#score	845.9999999999998
#seq	94
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_transcript_m1_run2.nuc.txt

#NT
UGAGCUG	chr10:99520146-99520435(+)$1	289	10	17	17.2068
agagcug	chr14:24105635-24105858(+)$1	223	39	46	14.1034
UGAGCUU	chr14:73587827-73588074(+)$1	247	58	65	12.4655
UGAGCUG	chr3:184107240-184107506(+)$1	266	9	16	17.2068
UGAGCAG	chr11:75147950-75148194(-)$1	244	134	141	13.9310
GGAGCUG	chr19:36290931-36291207(-)$1	276	204	211	13.9310
UGAGCAG	chr6:30884791-30885048(+)$1	257	32	39	13.9310
UGUGCUG	chr21:35210298-35210610(+)$1	312	299	306	12.9827
ugagaug	chr14:89791206-89791469(-)$1	263	49	56	12.6379
ugagcug	chr11:65197911-65198129(+)$1	218	193	200	17.2068
UGAGCUG	chrX:153701284-153701617(+)$1	333	137	144	17.2068
AGAGCUG	chr11:64035093-64035380(+)$1	287	202	209	14.1034
UGACCUG	chr20:33432647-33432938(-)$1	291	186	193	12.3793
UGAGCUG	chr21:46935038-46935289(-)$1	251	146	153	17.2068
AGAGCUG	chr14:24108292-24108508(+)$1	216	26	33	14.1034
UGAGCUG	chr11:638020-638299(+)$1	279	249	256	17.2068
UGAGCUG	chr16:28616993-28617284(-)$1	291	133	140	17.2068
UGAGCGG	chr17:7322137-7322360(+)$1	223	69	76	13.3275
GGAGCUG	chr2:73453821-73454076(+)$1	255	201	208	13.9310
UUAGCUG	chr10:79800296-79800541(+)$1	245	104	111	13.0689
AGAGCUG	chr6:30890780-30891012(+)$1	232	133	140	14.1034
UUAGCUG	chr3:38164288-38164582(-)$1	294	256	263	13.0689
GGAGCUG	chr19:1980590-1980857(+)$1	267	83	90	13.9310
agagcug	chr7:156665609-156665886(-)$1	277	50	57	14.1034
UGAGCAG	chr22:21352377-21352670(+)$1	293	76	83	13.9310
GGAGCUG	chr1:22150072-22150313(-)$1	241	137	144	13.9310
UGGGCUG	chr12:133200739-133201040(-)$1	301	243	250	12.9827
UGAGCUG	chr3:49133311-49133552(-)$1	241	88	95	17.2068
AGAGCUG	chr14:103576447-103576751(+)$1	304	8	15	14.1034
UGAGCUG	chr11:65194712-65194920(+)$1	208	200	207	17.2068
GGAGCUG	chr20:60888044-60888272(-)$1	228	77	84	13.9310
UAAGCUG	chr9:117073024-117073248(+)$1	224	187	194	12.9827
UGGGCUG	chr1:1231703-1231929(-)$1	226	159	166	12.9827
UGAGCGG	chr20:60889510-60889714(-)$1	204	155	162	13.3275
GGAGCUG	chr3:49722594-49722809(-)$1	215	146	153	13.9310
UGUGCUG	chr17:43220517-43220835(+)$1	318	244	251	12.9827
UGAGCAG	chr12:57489812-57490055(-)$1	243	30	37	13.9310
ugagcug	chr10:120471900-120472188(-)$1	288	73	80	17.2068
UGAGCAG	chr20:60887367-60887598(-)$1	231	144	151	13.9310
UGUGCUG	chr19:2754925-2755226(-)$1	301	158	165	12.9827
UGAGCUG	chr2:85825638-85825878(-)$1	240	94	101	17.2068
UGAGGUG	chr19:39962201-39962469(+)$1	268	170	177	12.5517
UGGGCUG	chr5:73923397-73923647(-)$1	250	108	115	12.9827
agagcug	chr4:6675381-6675690(+)$1	309	12	19	14.1034
UGAGCUG	chr9:139317863-139318166(+)$1	303	175	182	17.2068
UGAGCAG	chr17:64796439-64796662(+)$1	223	130	137	13.9310
agagcug	chr14:24107016-24107283(+)$1	267	256	263	14.1034
UGAGCAG	chr14:24108076-24108280(+)$1	204	64	71	13.9310
ucagcug	chr12:123463979-123464277(+)$1	298	179	186	12.9827
UCAGCUG	chr7:73008079-73008299(-)$1	220	129	136	12.9827
UGAGCUG	chr6:43128952-43129198(+)$1	246	39	46	17.2068
UUAGCUG	chr20:62571242-62571508(-)$1	266	176	183	13.0689
UGAGCUA	chr17:1680647-1680899(+)$1	252	241	248	12.4655
UGAGCAG	chr2:26414100-26414361(-)$1	261	240	247	13.9310
UGAGAUG	chr11:124789075-124789353(-)$1	278	1	8	12.6379
UAAGCUG	chr22:50893142-50893377(-)$1	235	136	143	12.9827
UGAGCUG	chr16:67978086-67978337(-)$1	251	61	68	17.2068

#otherMatches

#Struct PSSM
eeeeamm	chr22:43265838-43266135(-)$1	297	175	182	13.9310
LDDDD{D	chr10:99520146-99520435(+)$1	289	10	17	17.2068
!cccqqq	chr14:24105635-24105858(+)$1	223	39	46	14.1034
IIICCCN	chr14:73587827-73588074(+)$1	247	58	65	12.4655
BA{BB{D	chr3:184107240-184107506(+)$1	266	9	16	17.2068
DGGGGGG	chr11:75147950-75148194(-)$1	244	134	141	13.9310
c[ggggg	chr19:36290931-36291207(-)$1	276	204	211	13.9310
E::eeee	chr6:30884791-30885048(+)$1	257	32	39	13.9310
dddd22b	chr21:35210298-35210610(+)$1	312	299	306	12.9827
cc[aooo	chr14:89791206-89791469(-)$1	263	49	56	12.6379
GGGG::f	chr11:65197911-65198129(+)$1	218	193	200	17.2068
nbbbb:D	chrX:153701284-153701617(+)$1	333	137	144	17.2068
dd4444b	chr11:64035093-64035380(+)$1	287	202	209	14.1034
ennnnne	chr20:33432647-33432938(-)$1	291	186	193	12.3793
eeeeBB}	chr21:46935038-46935289(-)$1	251	146	153	17.2068
"""dddd	chr14:24108292-24108508(+)$1	216	26	33	14.1034
ggggggg	chr11:638020-638299(+)$1	279	249	256	17.2068
eeeeee[	chr16:28616993-28617284(-)$1	291	133	140	17.2068
d!!a[cc	chr17:7322137-7322360(+)$1	223	69	76	13.3275
dddd]bb	chr2:73453821-73454076(+)$1	255	201	208	13.9310
FFFFFKK	chr10:79800296-79800541(+)$1	245	104	111	13.0689
eeeeccc	chr6:30890780-30891012(+)$1	232	133	140	14.1034
%%%eeee	chr3:38164288-38164582(-)$1	294	256	263	13.0689
GGFFFFF	chr19:1980590-1980857(+)$1	267	83	90	13.9310
:gggggg	chr7:156665609-156665886(-)$1	277	50	57	14.1034
55eeeee	chr22:21352377-21352670(+)$1	293	76	83	13.9310
ffffff2	chr1:22150072-22150313(-)$1	241	137	144	13.9310
IIICCCC	chr12:133200739-133201040(-)$1	301	243	250	12.9827
eeee[cc	chr3:49133311-49133552(-)$1	241	88	95	17.2068
D{FFFFF	chr14:103576447-103576751(+)$1	304	8	15	14.1034
eeeCCC:	chr11:65194712-65194920(+)$1	208	200	207	17.2068
[ddddmm	chr20:60888044-60888272(-)$1	228	77	84	13.9310
ooooddd	chr9:117073024-117073248(+)$1	224	187	194	12.9827
J}FFFFF	chr1:1231703-1231929(-)$1	226	159	166	12.9827
::CCC}A	chr20:60889510-60889714(-)$1	204	155	162	13.3275
]a]bb33	chr3:49722594-49722809(-)$1	215	146	153	13.9310
:ffffff	chr17:43220517-43220835(+)$1	318	244	251	12.9827
f"""bb%	chr12:57489812-57490055(-)$1	243	30	37	13.9310
fffffrr	chr10:120471900-120472188(-)$1	288	73	80	17.2068
[ccc!!c	chr20:60887367-60887598(-)$1	231	144	151	13.9310
555bbgg	chr19:2754925-2755226(-)$1	301	158	165	12.9827
G}A}BB}	chr2:85825638-85825878(-)$1	240	94	101	17.2068
[ccc[ee	chr19:39962201-39962469(+)$1	268	170	177	12.5517
:ffffff	chr5:73923397-73923647(-)$1	250	108	115	12.9827
:::::::	chr4:6675381-6675690(+)$1	309	12	19	14.1034
dd::::g	chr9:139317863-139318166(+)$1	303	175	182	17.2068
ccc22cc	chr17:64796439-64796662(+)$1	223	130	137	13.9310
ZZZEEEE	chr14:24107016-24107283(+)$1	267	256	263	14.1034
]ddddee	chr14:24108076-24108280(+)$1	204	64	71	13.9310
]ffffff	chr12:123463979-123464277(+)$1	298	179	186	12.9827
555gggg	chr7:73008079-73008299(-)$1	220	129	136	12.9827
{BBKKHH	chr6:43128952-43129198(+)$1	246	39	46	17.2068
"""cccq	chr20:62571242-62571508(-)$1	266	176	183	13.0689
cccccc:	chr17:1680647-1680899(+)$1	252	241	248	12.4655
pdddddd	chr2:26414100-26414361(-)$1	261	240	247	13.9310
:GGGGGG	chr11:124789075-124789353(-)$1	278	1	8	12.6379
c####bb	chr22:50893142-50893377(-)$1	235	136	143	12.9827
::ccc[g	chr16:67978086-67978337(-)$1	251	61	68	17.2068

#DB
(((((..	chr22:43265838-43266135(-)$1	1	175	182	13.9310
.((((.(	chr10:99520146-99520435(+)$1	1	10	17	17.2068
.(((...	chr14:24105635-24105858(+)$1	1	39	46	14.1034
((((((.	chr14:73587827-73588074(+)$1	1	58	65	12.4655
((.((.(	chr3:184107240-184107506(+)$1	1	9	16	17.2068
)))))))	chr11:75147950-75148194(-)$1	1	134	141	13.9310
(.(((((	chr19:36290931-36291207(-)$1	1	204	211	13.9310
(..((((	chr6:30884791-30885048(+)$1	1	32	39	13.9310
))))..)	chr21:35210298-35210610(+)$1	1	299	306	12.9827
((.(...	chr14:89791206-89791469(-)$1	1	49	56	12.6379
))))..(	chr11:65197911-65198129(+)$1	1	193	200	17.2068
.)))).(	chrX:153701284-153701617(+)$1	1	137	144	17.2068
))....)	chr11:64035093-64035380(+)$1	1	202	209	14.1034
(.....)	chr20:33432647-33432938(-)$1	1	186	193	12.3793
)))))).	chr21:46935038-46935289(-)$1	1	146	153	17.2068
...((((	chr14:24108292-24108508(+)$1	1	26	33	14.1034
)))))))	chr11:638020-638299(+)$1	1	249	256	17.2068
((((((.	chr16:28616993-28617284(-)$1	1	133	140	17.2068
(..(.((	chr17:7322137-7322360(+)$1	1	69	76	13.3275
)))).))	chr2:73453821-73454076(+)$1	1	201	208	13.9310
(((((..	chr10:79800296-79800541(+)$1	1	104	111	13.0689
)))))))	chr6:30890780-30891012(+)$1	1	133	140	14.1034
...((((	chr3:38164288-38164582(-)$1	1	256	263	13.0689
(((((((	chr19:1980590-1980857(+)$1	1	83	90	13.9310
.((((((	chr7:156665609-156665886(-)$1	1	50	57	14.1034
..)))))	chr22:21352377-21352670(+)$1	1	76	83	13.9310
)))))).	chr1:22150072-22150313(-)$1	1	137	144	13.9310
)))))))	chr12:133200739-133201040(-)$1	1	243	250	12.9827
((((.((	chr3:49133311-49133552(-)$1	1	88	95	17.2068
(.(((((	chr14:103576447-103576751(+)$1	1	8	15	14.1034
)))))).	chr11:65194712-65194920(+)$1	1	200	207	17.2068
.((((..	chr20:60888044-60888272(-)$1	1	77	84	13.9310
....)))	chr9:117073024-117073248(+)$1	1	187	194	12.9827
).)))))	chr1:1231703-1231929(-)$1	1	159	166	12.9827
..))).)	chr20:60889510-60889714(-)$1	1	155	162	13.3275
.).))..	chr3:49722594-49722809(-)$1	1	146	153	13.9310
.((((((	chr17:43220517-43220835(+)$1	1	244	251	12.9827
(...((.	chr12:57489812-57490055(-)$1	1	30	37	13.9310
(((((..	chr10:120471900-120472188(-)$1	1	73	80	17.2068
.(((..(	chr20:60887367-60887598(-)$1	1	144	151	13.9310
...))((	chr19:2754925-2755226(-)$1	1	158	165	12.9827
).).)).	chr2:85825638-85825878(-)$1	1	94	101	17.2068
.(((.((	chr19:39962201-39962469(+)$1	1	170	177	12.5517
.((((((	chr5:73923397-73923647(-)$1	1	108	115	12.9827
.......	chr4:6675381-6675690(+)$1	1	12	19	14.1034
))....(	chr9:139317863-139318166(+)$1	1	175	182	17.2068
)))..))	chr17:64796439-64796662(+)$1	1	130	137	13.9310
...))))	chr14:24107016-24107283(+)$1	1	256	263	14.1034
.))))))	chr14:24108076-24108280(+)$1	1	64	71	13.9310
.))))))	chr12:123463979-123464277(+)$1	1	179	186	12.9827
...))))	chr7:73008079-73008299(-)$1	1	129	136	12.9827
.((..((	chr6:43128952-43129198(+)$1	1	39	46	17.2068
...(((.	chr20:62571242-62571508(-)$1	1	176	183	13.0689
)))))).	chr17:1680647-1680899(+)$1	1	241	248	12.4655
.))))((	chr2:26414100-26414361(-)$1	1	240	247	13.9310
.((((((	chr11:124789075-124789353(-)$1	1	1	8	12.6379
(....((	chr22:50893142-50893377(-)$1	1	136	143	12.9827
..(((.(	chr16:67978086-67978337(-)$1	1	61	68	17.2068

#PSSM
U : 0.68	G : 0.10	a : 0.06	u : 0.06	A : 0.06	
G : 0.75	g : 0.12	U : 0.05	A : 0.03	c : 0.01	C : 0.01	
A : 0.75	a : 0.13	U : 0.05	G : 0.05	
G : 0.84	g : 0.13	C : 0.01	
C : 0.82	c : 0.12	a : 0.01	G : 0.01	A : 0.01	
U : 0.67	A : 0.15	u : 0.13	G : 0.03	
G : 0.82	g : 0.13	U : 0.01	A : 0.01	

#score	833.5172413793106
#seq	58
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_UTR_m3_run1.nuc.txt

#NT
CUGGC	chr7:23571431-23571651(-)$1	220	34	39	15.0000
CUGGC	chr19:18548017-18548295(-)$1	278	123	128	15.0000
CUGGC	chr6:31797494-31797751(+)$1	257	88	93	15.0000
CUGGC	chr11:57174598-57174863(-)$1	265	23	28	15.0000
CUGGC	chr17:43227556-43227794(+)$1	238	204	209	15.0000
CUGGC	chr16:69775957-69776219(-)$1	262	19	24	15.0000
CUGGC	chr6:44081132-44081397(-)$1	265	42	47	15.0000
cUGGC	chr11:27494092-27494363(-)$1	271	262	267	15.0000
CUGGC	chr7:99954897-99955152(+)$1	255	139	144	15.0000
CUGGC	chr10:73576084-73576332(-)$1	248	39	44	15.0000
CUGGC	chr1:183596534-183596802(-)$1	268	137	142	15.0000
CUGGC	chr1:1560283-1560561(+)$1	278	39	44	15.0000
CUGGC	chrX:20284844-20285190(-)$1	346	226	231	15.0000
CUGGC	chr12:6862110-6862377(-)$1	267	84	89	15.0000
CUGGC	chr12:49666616-49666866(+)$1	250	89	94	15.0000
CUGGC	chr1:109234933-109235210(+)$1	277	39	44	15.0000
CUGGC	chr9:139729816-139730072(+)$1	256	151	156	15.0000
CUGGC	chr16:1836671-1836932(+)$1	261	46	51	15.0000
CUGGC	chr15:74702092-74702359(-)$1	267	196	201	15.0000
CUGGC	chr11:119177370-119177636(+)$1	266	203	208	15.0000
CUGGC	chr11:61089035-61089270(-)$1	235	50	55	15.0000
CUGGC	chr12:6879226-6879485(+)$1	259	84	89	15.0000
CUGGC	chr1:6245412-6245661(-)$1	249	175	180	15.0000
CUGGC	chr17:79878338-79878589(-)$1	251	121	126	15.0000
CUGGC	chr22:40805055-40805333(+)$1	278	182	187	15.0000
CUGGC	chr11:95522585-95522865(-)$1	280	1	6	15.0000
CUGGC	chr3:196230254-196230506(-)$1	252	217	222	15.0000
CUGGC	chr11:85375878-85376113(-)$1	235	185	190	15.0000
CUGGC	chr17:43225897-43226184(+)$1	287	248	253	15.0000
CUGGC	chr12:49666689-49666938(+)$1	249	16	21	15.0000
CUGGC	chr7:100171590-100171814(-)$1	224	69	74	15.0000
CUGGC	chr3:122785876-122786221(+)$1	345	165	170	15.0000
CUGGC	chr11:770333-770579(-)$1	246	140	145	15.0000
cuggc	chr16:30999938-31000212(+)$1	274	7	12	15.0000
CUGGC	chr22:22049865-22050118(+)$1	253	50	55	15.0000
CUGGC	chr1:59247155-59247411(-)$1	256	155	160	15.0000
CUGGC	chr5:141019197-141019449(-)$1	252	63	68	15.0000
CUGGC	chr22:21307158-21307382(+)$1	224	119	124	15.0000
cuggc	chr17:79603860-79604129(-)$1	269	21	26	15.0000
CUGGC	chr16:725956-726265(+)$1	309	51	56	15.0000
CUGGC	chr16:67263224-67263481(-)$1	257	25	30	15.0000
CUGGC	chr6:32945977-32946268(+)$1	291	154	159	15.0000
CUGGC	chr12:49666495-49666738(+)$1	243	210	215	15.0000
CUGGC	chr1:155658335-155658594(-)$1	259	43	48	15.0000
CUGGC	chr1:154600239-154600494(-)$1	255	115	120	15.0000
CUGGC	chr6:76311783-76312086(+)$1	303	282	287	15.0000
CUGGC	chr10:73576684-73576929(-)$1	245	23	28	15.0000
CUGGC	chr22:21307182-21307411(+)$1	229	95	100	15.0000
CUGGC	chr15:66797025-66797275(-)$1	250	170	175	15.0000
CUGGC	chr16:30081494-30081709(+)$1	215	126	131	15.0000
CUGGC	chr12:56122310-56122595(-)$1	285	30	35	15.0000

#otherMatches

#Struct PSSM
JJJJJ	chr17:73775397-73775723(-)$1	326	86	91	15.0000
ggggg	chr7:23571431-23571651(-)$1	220	34	39	15.0000
dd:ee	chr19:18548017-18548295(-)$1	278	123	128	15.0000
cmmmm	chr6:31797494-31797751(+)$1	257	88	93	15.0000
IIIII	chr11:57174598-57174863(-)$1	265	23	28	15.0000
:eeee	chr17:43227556-43227794(+)$1	238	204	209	15.0000
::CCC	chr16:69775957-69776219(-)$1	262	19	24	15.0000
ooooo	chr6:44081132-44081397(-)$1	265	42	47	15.0000
FFFFF	chr11:27494092-27494363(-)$1	271	262	267	15.0000
bb]ad	chr7:99954897-99955152(+)$1	255	139	144	15.0000
eeeee	chr10:73576084-73576332(-)$1	248	39	44	15.0000
g]ddd	chr1:183596534-183596802(-)$1	268	137	142	15.0000
nnnnn	chr1:1560283-1560561(+)$1	278	39	44	15.0000
pppcc	chrX:20284844-20285190(-)$1	346	226	231	15.0000
==nnn	chr12:6862110-6862377(-)$1	267	84	89	15.0000
:ccc$	chr12:49666616-49666866(+)$1	250	89	94	15.0000
OODDD	chr1:109234933-109235210(+)$1	277	39	44	15.0000
f22cc	chr9:139729816-139730072(+)$1	256	151	156	15.0000
cmmmm	chr16:1836671-1836932(+)$1	261	46	51	15.0000
b22ee	chr15:74702092-74702359(-)$1	267	196	201	15.0000
::HHH	chr11:119177370-119177636(+)$1	266	203	208	15.0000
dddff	chr11:61089035-61089270(-)$1	235	50	55	15.0000
ee!!b	chr12:6879226-6879485(+)$1	259	84	89	15.0000
c]eee	chr1:6245412-6245661(-)$1	249	175	180	15.0000
eeeee	chr17:79878338-79878589(-)$1	251	121	126	15.0000
J::EE	chr22:40805055-40805333(+)$1	278	182	187	15.0000
cc!!c	chr11:95522585-95522865(-)$1	280	1	6	15.0000
c]bb:	chr3:196230254-196230506(-)$1	252	217	222	15.0000
eccc]	chr11:85375878-85376113(-)$1	235	185	190	15.0000
CCYYD	chr17:43225897-43226184(+)$1	287	248	253	15.0000
nnccc	chr12:49666689-49666938(+)$1	249	16	21	15.0000
d]bb]	chr7:100171590-100171814(-)$1	224	69	74	15.0000
ee[cc	chr3:122785876-122786221(+)$1	345	165	170	15.0000
ee]bb	chr11:770333-770579(-)$1	246	140	145	15.0000
::ccc	chr16:30999938-31000212(+)$1	274	7	12	15.0000
eeeee	chr22:22049865-22050118(+)$1	253	50	55	15.0000
hh]cc	chr1:59247155-59247411(-)$1	256	155	160	15.0000
eeee[	chr5:141019197-141019449(-)$1	252	63	68	15.0000
d]eee	chr22:21307158-21307382(+)$1	224	119	124	15.0000
eeeee	chr17:79603860-79604129(-)$1	269	21	26	15.0000
gggg:	chr16:725956-726265(+)$1	309	51	56	15.0000
ffff]	chr16:67263224-67263481(-)$1	257	25	30	15.0000
DDD}D	chr6:32945977-32946268(+)$1	291	154	159	15.0000
::EEE	chr12:49666495-49666738(+)$1	243	210	215	15.0000
d:GGG	chr1:155658335-155658594(-)$1	259	43	48	15.0000
a"""f	chr1:154600239-154600494(-)$1	255	115	120	15.0000
GGGee	chr6:76311783-76312086(+)$1	303	282	287	15.0000
[dddd	chr10:73576684-73576929(-)$1	245	23	28	15.0000
d]eee	chr22:21307182-21307411(+)$1	229	95	100	15.0000
JJJEE	chr15:66797025-66797275(-)$1	250	170	175	15.0000
FFFFF	chr16:30081494-30081709(+)$1	215	126	131	15.0000
bb]hh	chr12:56122310-56122595(-)$1	285	30	35	15.0000

#DB
(((((	chr17:73775397-73775723(-)$1	1	86	91	15.0000
)))))	chr7:23571431-23571651(-)$1	1	34	39	15.0000
)).((	chr19:18548017-18548295(-)$1	1	123	128	15.0000
(....	chr6:31797494-31797751(+)$1	1	88	93	15.0000
(((((	chr11:57174598-57174863(-)$1	1	23	28	15.0000
.((((	chr17:43227556-43227794(+)$1	1	204	209	15.0000
..(((	chr16:69775957-69776219(-)$1	1	19	24	15.0000
.....	chr6:44081132-44081397(-)$1	1	42	47	15.0000
)))))	chr11:27494092-27494363(-)$1	1	262	267	15.0000
)).))	chr7:99954897-99955152(+)$1	1	139	144	15.0000
(((((	chr10:73576084-73576332(-)$1	1	39	44	15.0000
).)))	chr1:183596534-183596802(-)$1	1	137	142	15.0000
.....	chr1:1560283-1560561(+)$1	1	39	44	15.0000
...))	chrX:20284844-20285190(-)$1	1	226	231	15.0000
((...	chr12:6862110-6862377(-)$1	1	84	89	15.0000
.(((.	chr12:49666616-49666866(+)$1	1	89	94	15.0000
..(((	chr1:109234933-109235210(+)$1	1	39	44	15.0000
)..))	chr9:139729816-139730072(+)$1	1	151	156	15.0000
(....	chr16:1836671-1836932(+)$1	1	46	51	15.0000
)..))	chr15:74702092-74702359(-)$1	1	196	201	15.0000
..)))	chr11:119177370-119177636(+)$1	1	203	208	15.0000
)))))	chr11:61089035-61089270(-)$1	1	50	55	15.0000
((..(	chr12:6879226-6879485(+)$1	1	84	89	15.0000
).)))	chr1:6245412-6245661(-)$1	1	175	180	15.0000
)))))	chr17:79878338-79878589(-)$1	1	121	126	15.0000
)..((	chr22:40805055-40805333(+)$1	1	182	187	15.0000
((..(	chr11:95522585-95522865(-)$1	1	1	6	15.0000
).)).	chr3:196230254-196230506(-)$1	1	217	222	15.0000
)))).	chr11:85375878-85376113(-)$1	1	185	190	15.0000
))..)	chr17:43225897-43226184(+)$1	1	248	253	15.0000
..)))	chr12:49666689-49666938(+)$1	1	16	21	15.0000
).)).	chr7:100171590-100171814(-)$1	1	69	74	15.0000
((.((	chr3:122785876-122786221(+)$1	1	165	170	15.0000
)).))	chr11:770333-770579(-)$1	1	140	145	15.0000
..(((	chr16:30999938-31000212(+)$1	1	7	12	15.0000
)))))	chr22:22049865-22050118(+)$1	1	50	55	15.0000
)).))	chr1:59247155-59247411(-)$1	1	155	160	15.0000
((((.	chr5:141019197-141019449(-)$1	1	63	68	15.0000
).)))	chr22:21307158-21307382(+)$1	1	119	124	15.0000
(((((	chr17:79603860-79604129(-)$1	1	21	26	15.0000
)))).	chr16:725956-726265(+)$1	1	51	56	15.0000
)))).	chr16:67263224-67263481(-)$1	1	25	30	15.0000
))).)	chr6:32945977-32946268(+)$1	1	154	159	15.0000
..)))	chr12:49666495-49666738(+)$1	1	210	215	15.0000
).(((	chr1:155658335-155658594(-)$1	1	43	48	15.0000
(...(	chr1:154600239-154600494(-)$1	1	115	120	15.0000
)))((	chr6:76311783-76312086(+)$1	1	282	287	15.0000
.((((	chr10:73576684-73576929(-)$1	1	23	28	15.0000
).)))	chr22:21307182-21307411(+)$1	1	95	100	15.0000
)))))	chr15:66797025-66797275(-)$1	1	170	175	15.0000
)))))	chr16:30081494-30081709(+)$1	1	126	131	15.0000
)).))	chr12:56122310-56122595(-)$1	1	30	35	15.0000

#PSSM
C : 0.94	c : 0.05	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
C : 0.96	c : 0.03	

#score	780.0000000000001
#seq	52
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_CDS_m2_run2.nuc.txt

#NT
CCAAGGGGGCA	chr2:232326205-232326482(-)$1	277	10	21	18.6250
UCAAGGUGACC	chr2:232327809-232328119(-)$1	310	103	114	14.8750
CCCAGGAGACA	chr9:117002396-117002646(+)$1	250	108	119	19.2500
CCAAAGAGAUA	chr16:2580589-2580901(+)$1	312	86	97	16.7500
CCAAGAAGAAA	chr6:26055915-26056141(-)$1	226	113	124	16.1250
CCAAGGAGACA	chr9:116997816-116998031(+)$1	215	103	114	23.0000
ACAACGGGACA	chr20:2819569-2819828(-)$1	259	158	169	15.5000

#otherMatches

#Struct PSSM
CQQQQQQQQEE	chr2:232325086-232325378(-)$1	292	39	50	14.8750
oooocccccc:	chr2:232326205-232326482(-)$1	277	10	21	18.6250
vvvvvvvvccc	chr2:232327809-232328119(-)$1	310	103	114	14.8750
44cccccc]bb	chr9:117002396-117002646(+)$1	250	108	119	19.2500
sssssffffff	chr16:2580589-2580901(+)$1	312	86	97	16.7500
:::eeeee"""	chr6:26055915-26056141(-)$1	226	113	124	16.1250
dd333bb]ccc	chr9:116997816-116998031(+)$1	215	103	114	23.0000
cc[bbqqqqqq	chr20:2819569-2819828(-)$1	259	158	169	15.5000

#DB
(........((	chr2:232325086-232325378(-)$1	1	39	50	14.8750
....)))))).	chr2:232326205-232326482(-)$1	1	10	21	18.6250
........)))	chr2:232327809-232328119(-)$1	1	103	114	14.8750
..)))))).))	chr9:117002396-117002646(+)$1	1	108	119	19.2500
.....))))))	chr16:2580589-2580901(+)$1	1	86	97	16.7500
...(((((...	chr6:26055915-26056141(-)$1	1	113	124	16.1250
))...)).)))	chr9:116997816-116998031(+)$1	1	103	114	23.0000
((.((......	chr20:2819569-2819828(-)$1	1	158	169	15.5000

#PSSM
C : 0.62	U : 0.25	A : 0.12	
C : 0.87	A : 0.12	
A : 0.87	C : 0.12	
A : 1.00	
G : 0.75	A : 0.12	C : 0.12	
G : 0.87	A : 0.12	
A : 0.62	G : 0.25	U : 0.12	
G : 1.00	
A : 0.75	G : 0.25	
C : 0.75	U : 0.12	A : 0.12	
A : 0.87	C : 0.12	

#score	139.0
#seq	8
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_UTR_m3_run1.nuc.txt

#NT
GCAG	chr3:128211654-128211981(+)$1	327	145	149	11.9999
GCAG	chr6:3272236-3272458(+)$1	222	109	113	11.9999
GCAG	chr8:144343074-144343337(+)$1	263	59	63	11.9999
GCAG	chr7:150027324-150027538(+)$1	214	48	52	11.9999
GCAG	chr9:134350586-134350828(+)$1	242	219	223	11.9999
GCAG	chr6:3272344-3272605(+)$1	261	1	5	11.9999
GCAG	chr14:105714210-105714511(-)$1	301	8	12	11.9999
GCAG	chr7:1007641-1007890(-)$1	249	12	16	11.9999
GCAG	chr11:61583300-61583569(-)$1	269	13	17	11.9999
GCAG	chr16:69153681-69153924(-)$1	243	73	77	11.9999
GCAG	chr12:104697385-104697719(+)$1	334	263	267	11.9999
GCAG	chr8:144335235-144335505(+)$1	270	85	89	11.9999
GCAG	chr4:760842-761086(-)$1	244	91	95	11.9999
GCAG	chr16:447710-447954(+)$1	244	224	228	11.9999
GCAG	chr1:144931889-144932150(-)$1	261	0	4	11.9999
GCAG	chr8:94752665-94752898(-)$1	233	82	86	11.9999
GCAG	chr3:195635529-195635820(-)$1	291	131	135	11.9999
GCAG	chr19:45166253-45166498(+)$1	245	13	17	11.9999
GCAG	chr12:125398765-125399053(-)$1	288	62	66	11.9999
GCAG	chr19:5112547-5112801(+)$1	254	1	5	11.9999
GCAG	chr16:8953039-8953336(+)$1	297	16	20	11.9999
GCAG	chr7:1132495-1132768(-)$1	273	111	115	11.9999
GCAG	chr1:2160051-2160335(+)$1	284	166	170	11.9999
GCAG	chr2:242168036-242168309(+)$1	273	95	99	11.9999
GCAG	chr19:2425971-2426224(-)$1	253	123	127	11.9999
GCAG	chr2:47747889-47748150(+)$1	261	78	82	11.9999
GCAG	chr19:2270196-2270466(+)$1	270	67	71	11.9999
GCAG	chr16:88922536-88922804(-)$1	268	25	29	11.9999
GCAG	chr11:74976691-74976945(-)$1	254	43	47	11.9999
GCAG	chr1:6652840-6653088(-)$1	248	85	89	11.9999
GCAG	chr20:62330389-62330646(-)$1	257	77	81	11.9999
GCAG	chr1:150946826-150947075(-)$1	249	186	190	11.9999
GCAG	chr19:3463295-3463582(+)$1	287	26	30	11.9999
GCAG	chr4:762904-763141(-)$1	237	115	119	11.9999
GCAG	chr3:49050532-49050811(+)$1	279	141	145	11.9999
GCAG	chr21:45157358-45157709(+)$1	351	135	139	11.9999
gcag	chr7:2147098-2147404(-)$1	306	94	98	11.9999
GCAG	chr16:85646700-85646990(+)$1	290	136	140	11.9999
GCAG	chr16:89351329-89351586(-)$1	257	27	31	11.9999
GCAG	chr11:843333-843609(+)$1	276	170	174	11.9999
GCAG	chr1:182360246-182360488(-)$1	242	10	14	11.9999
GCAG	chr14:105715325-105715579(-)$1	254	164	168	11.9999
GCAG	chr9:134351712-134351991(+)$1	279	260	264	11.9999
GCAG	chr7:1007846-1008163(-)$1	317	9	13	11.9999
GCAG	chrX:153589616-153589848(-)$1	232	5	9	11.9999
gcag	chr14:105714088-105714371(-)$1	283	24	28	11.9999
GCAG	chr16:87730764-87731032(-)$1	268	64	68	11.9999
GCAG	chr19:5112764-5113027(+)$1	263	120	124	11.9999
GCAG	chr7:100733120-100733368(+)$1	248	242	246	11.9999
GCAG	chr19:55558657-55558908(+)$1	251	47	51	11.9999
GCAG	chr22:19951898-19952165(+)$1	267	171	175	11.9999
GCAG	chr16:87736850-87737107(-)$1	257	21	25	11.9999
GCAG	chr19:1879431-1879746(-)$1	315	192	196	11.9999
GCAG	chr7:44048095-44048389(-)$1	294	160	164	11.9999
GCAG	chr7:5463017-5463309(-)$1	292	148	152	11.9999
GCAG	chr9:139715781-139716021(+)$1	240	93	97	11.9999
GCAG	chr11:63885681-63885939(-)$1	258	99	103	11.9999
gcag	chr19:48984261-48984519(+)$1	258	16	20	11.9999
gcag	chr18:47795994-47796282(-)$1	288	97	101	11.9999
GCAG	chr22:41922799-41923135(-)$1	336	65	69	11.9999
GCAG	chr3:25705723-25706031(-)$1	308	48	52	11.9999
GCAG	chr16:89349564-89349798(-)$1	234	194	198	11.9999
GCAG	chr14:105707909-105708180(-)$1	271	156	160	11.9999
GCAG	chr16:69154528-69154799(-)$1	271	2	6	11.9999
GCAG	chr6:3271374-3271636(+)$1	262	122	126	11.9999
GCAG	chr16:89006116-89006369(-)$1	253	178	182	11.9999
GCAG	chr19:18548014-18548297(-)$1	283	24	28	11.9999
GCAG	chr7:6522964-6523227(-)$1	263	13	17	11.9999
GCAG	chr16:85646860-85647113(+)$1	253	46	50	11.9999
GCAG	chr4:516178-516419(+)$1	241	115	119	11.9999
GCAG	chr9:134351211-134351462(+)$1	251	2	6	11.9999
GCAG	chr21:45223740-45223972(+)$1	232	175	179	11.9999
GCAG	chr14:105713508-105713747(-)$1	239	94	98	11.9999
GCAG	chr3:52515576-52515817(+)$1	241	99	103	11.9999
GCAG	chr16:89346605-89346824(-)$1	219	188	192	11.9999
GCAG	chr4:1229004-1229246(-)$1	242	2	6	11.9999
GCAG	chr19:1104362-1104635(+)$1	273	52	56	11.9999
GCAG	chr4:762004-762266(-)$1	262	127	131	11.9999
gcag	chr1:155947809-155948086(-)$1	277	118	122	11.9999
GCAG	chr19:58991519-58991818(-)$1	299	101	105	11.9999
GCAG	chr19:16187671-16187996(+)$1	325	161	165	11.9999
GCAG	chr2:25042924-25043220(+)$1	296	166	170	11.9999
GCAG	chr3:128209094-128209344(+)$1	250	16	20	11.9999
GCAG	chr16:85646662-85646900(+)$1	238	174	178	11.9999

#otherMatches

#Struct PSSM
gg[h	chr22:49829734-49829999(-)$1	265	101	105	11.9999
HHHH	chr3:128211654-128211981(+)$1	327	145	149	11.9999
fooo	chr6:3272236-3272458(+)$1	222	109	113	11.9999
gg""	chr8:144343074-144343337(+)$1	263	59	63	11.9999
oooo	chr7:150027324-150027538(+)$1	214	48	52	11.9999
dddd	chr9:134350586-134350828(+)$1	242	219	223	11.9999
FFFF	chr6:3272344-3272605(+)$1	261	1	5	11.9999
nnnn	chr14:105714210-105714511(-)$1	301	8	12	11.9999
IIII	chr7:1007641-1007890(-)$1	249	12	16	11.9999
bbmm	chr11:61583300-61583569(-)$1	269	13	17	11.9999
qqqb	chr16:69153681-69153924(-)$1	243	73	77	11.9999
BB}B	chr12:104697385-104697719(+)$1	334	263	267	11.9999
ffff	chr8:144335235-144335505(+)$1	270	85	89	11.9999
eeee	chr4:760842-761086(-)$1	244	91	95	11.9999
cccd	chr16:447710-447954(+)$1	244	224	228	11.9999
====	chr1:144931889-144932150(-)$1	261	0	4	11.9999
qqqq	chr8:94752665-94752898(-)$1	233	82	86	11.9999
{A{E	chr3:195635529-195635820(-)$1	291	131	135	11.9999
GGGG	chr19:45166253-45166498(+)$1	245	13	17	11.9999
:BB{	chr12:125398765-125399053(-)$1	288	62	66	11.9999
FFFF	chr19:5112547-5112801(+)$1	254	1	5	11.9999
HHHH	chr16:8953039-8953336(+)$1	297	16	20	11.9999
DDDD	chr7:1132495-1132768(-)$1	273	111	115	11.9999
333c	chr1:2160051-2160335(+)$1	284	166	170	11.9999
2eee	chr2:242168036-242168309(+)$1	273	95	99	11.9999
ffff	chr19:2425971-2426224(-)$1	253	123	127	11.9999
CC{C	chr2:47747889-47748150(+)$1	261	78	82	11.9999
{EEE	chr19:2270196-2270466(+)$1	270	67	71	11.9999
eeee	chr16:88922536-88922804(-)$1	268	25	29	11.9999
2ccc	chr11:74976691-74976945(-)$1	254	43	47	11.9999
!all	chr1:6652840-6653088(-)$1	248	85	89	11.9999
eeee	chr20:62330389-62330646(-)$1	257	77	81	11.9999
cc]b	chr1:150946826-150947075(-)$1	249	186	190	11.9999
oooo	chr19:3463295-3463582(+)$1	287	26	30	11.9999
4444	chr4:762904-763141(-)$1	237	115	119	11.9999
eeee	chr3:49050532-49050811(+)$1	279	141	145	11.9999
ffff	chr21:45157358-45157709(+)$1	351	135	139	11.9999
oooo	chr7:2147098-2147404(-)$1	306	94	98	11.9999
b22a	chr16:85646700-85646990(+)$1	290	136	140	11.9999
CC{A	chr16:89351329-89351586(-)$1	257	27	31	11.9999
dddd	chr11:843333-843609(+)$1	276	170	174	11.9999
EEE{	chr1:182360246-182360488(-)$1	242	10	14	11.9999
ii]e	chr14:105715325-105715579(-)$1	254	164	168	11.9999
DDDD	chr9:134351712-134351991(+)$1	279	260	264	11.9999
B{CC	chr7:1007846-1008163(-)$1	317	9	13	11.9999
bb[e	chrX:153589616-153589848(-)$1	232	5	9	11.9999
MMMC	chr14:105714088-105714371(-)$1	283	24	28	11.9999
##ff	chr16:87730764-87731032(-)$1	268	64	68	11.9999
ddFF	chr19:5112764-5113027(+)$1	263	120	124	11.9999
GGGG	chr7:100733120-100733368(+)$1	248	242	246	11.9999
cc]e	chr19:55558657-55558908(+)$1	251	47	51	11.9999
ccmm	chr22:19951898-19952165(+)$1	267	171	175	11.9999
eeee	chr16:87736850-87737107(-)$1	257	21	25	11.9999
[ccc	chr19:1879431-1879746(-)$1	315	192	196	11.9999
IIII	chr7:44048095-44048389(-)$1	294	160	164	11.9999
eeee	chr7:5463017-5463309(-)$1	292	148	152	11.9999
bb22	chr9:139715781-139716021(+)$1	240	93	97	11.9999
qqqq	chr11:63885681-63885939(-)$1	258	99	103	11.9999
JJJJ	chr19:48984261-48984519(+)$1	258	16	20	11.9999
ffll	chr18:47795994-47796282(-)$1	288	97	101	11.9999
EEKK	chr22:41922799-41923135(-)$1	336	65	69	11.9999
GGGG	chr3:25705723-25706031(-)$1	308	48	52	11.9999
qccc	chr16:89349564-89349798(-)$1	234	194	198	11.9999
c22e	chr14:105707909-105708180(-)$1	271	156	160	11.9999
EEE:	chr16:69154528-69154799(-)$1	271	2	6	11.9999
FFFF	chr6:3271374-3271636(+)$1	262	122	126	11.9999
d]dd	chr16:89006116-89006369(-)$1	253	178	182	11.9999
[a##	chr19:18548014-18548297(-)$1	283	24	28	11.9999
bb[b	chr7:6522964-6523227(-)$1	263	13	17	11.9999
###d	chr16:85646860-85647113(+)$1	253	46	50	11.9999
JJJJ	chr4:516178-516419(+)$1	241	115	119	11.9999
CCLL	chr9:134351211-134351462(+)$1	251	2	6	11.9999
HYYF	chr21:45223740-45223972(+)$1	232	175	179	11.9999
::::	chr14:105713508-105713747(-)$1	239	94	98	11.9999
DD{C	chr3:52515576-52515817(+)$1	241	99	103	11.9999
GG:c	chr16:89346605-89346824(-)$1	219	188	192	11.9999
:ddd	chr4:1229004-1229246(-)$1	242	2	6	11.9999
bbmm	chr19:1104362-1104635(+)$1	273	52	56	11.9999
EEEe	chr4:762004-762266(-)$1	262	127	131	11.9999
nnnn	chr1:155947809-155948086(-)$1	277	118	122	11.9999
clll	chr19:58991519-58991818(-)$1	299	101	105	11.9999
cc22	chr19:16187671-16187996(+)$1	325	161	165	11.9999
rrrr	chr2:25042924-25043220(+)$1	296	166	170	11.9999
QQQQ	chr3:128209094-128209344(+)$1	250	16	20	11.9999
b22a	chr16:85646662-85646900(+)$1	238	174	178	11.9999

#DB
((.(	chr22:49829734-49829999(-)$1	1	101	105	11.9999
((((	chr3:128211654-128211981(+)$1	1	145	149	11.9999
(...	chr6:3272236-3272458(+)$1	1	109	113	11.9999
((..	chr8:144343074-144343337(+)$1	1	59	63	11.9999
....	chr7:150027324-150027538(+)$1	1	48	52	11.9999
((((	chr9:134350586-134350828(+)$1	1	219	223	11.9999
((((	chr6:3272344-3272605(+)$1	1	1	5	11.9999
....	chr14:105714210-105714511(-)$1	1	8	12	11.9999
((((	chr7:1007641-1007890(-)$1	1	12	16	11.9999
((..	chr11:61583300-61583569(-)$1	1	13	17	11.9999
...)	chr16:69153681-69153924(-)$1	1	73	77	11.9999
)).)	chr12:104697385-104697719(+)$1	1	263	267	11.9999
((((	chr8:144335235-144335505(+)$1	1	85	89	11.9999
((((	chr4:760842-761086(-)$1	1	91	95	11.9999
))))	chr16:447710-447954(+)$1	1	224	228	11.9999
((((	chr1:144931889-144932150(-)$1	1	0	4	11.9999
....	chr8:94752665-94752898(-)$1	1	82	86	11.9999
.(.(	chr3:195635529-195635820(-)$1	1	131	135	11.9999
((((	chr19:45166253-45166498(+)$1	1	13	17	11.9999
.((.	chr12:125398765-125399053(-)$1	1	62	66	11.9999
((((	chr19:5112547-5112801(+)$1	1	1	5	11.9999
((((	chr16:8953039-8953336(+)$1	1	16	20	11.9999
))))	chr7:1132495-1132768(-)$1	1	111	115	11.9999
...)	chr1:2160051-2160335(+)$1	1	166	170	11.9999
.)))	chr2:242168036-242168309(+)$1	1	95	99	11.9999
((((	chr19:2425971-2426224(-)$1	1	123	127	11.9999
((.(	chr2:47747889-47748150(+)$1	1	78	82	11.9999
.(((	chr19:2270196-2270466(+)$1	1	67	71	11.9999
((((	chr16:88922536-88922804(-)$1	1	25	29	11.9999
.)))	chr11:74976691-74976945(-)$1	1	43	47	11.9999
.(..	chr1:6652840-6653088(-)$1	1	85	89	11.9999
))))	chr20:62330389-62330646(-)$1	1	77	81	11.9999
)).)	chr1:150946826-150947075(-)$1	1	186	190	11.9999
....	chr19:3463295-3463582(+)$1	1	26	30	11.9999
....	chr4:762904-763141(-)$1	1	115	119	11.9999
))))	chr3:49050532-49050811(+)$1	1	141	145	11.9999
))))	chr21:45157358-45157709(+)$1	1	135	139	11.9999
....	chr7:2147098-2147404(-)$1	1	94	98	11.9999
)..)	chr16:85646700-85646990(+)$1	1	136	140	11.9999
((.(	chr16:89351329-89351586(-)$1	1	27	31	11.9999
((((	chr11:843333-843609(+)$1	1	170	174	11.9999
(((.	chr1:182360246-182360488(-)$1	1	10	14	11.9999
)).)	chr14:105715325-105715579(-)$1	1	164	168	11.9999
))))	chr9:134351712-134351991(+)$1	1	260	264	11.9999
(.((	chr7:1007846-1008163(-)$1	1	9	13	11.9999
((.(	chrX:153589616-153589848(-)$1	1	5	9	11.9999
...(	chr14:105714088-105714371(-)$1	1	24	28	11.9999
..((	chr16:87730764-87731032(-)$1	1	64	68	11.9999
))))	chr19:5112764-5113027(+)$1	1	120	124	11.9999
))))	chr7:100733120-100733368(+)$1	1	242	246	11.9999
)).)	chr19:55558657-55558908(+)$1	1	47	51	11.9999
((..	chr22:19951898-19952165(+)$1	1	171	175	11.9999
((((	chr16:87736850-87737107(-)$1	1	21	25	11.9999
.(((	chr19:1879431-1879746(-)$1	1	192	196	11.9999
((((	chr7:44048095-44048389(-)$1	1	160	164	11.9999
((((	chr7:5463017-5463309(-)$1	1	148	152	11.9999
))..	chr9:139715781-139716021(+)$1	1	93	97	11.9999
....	chr11:63885681-63885939(-)$1	1	99	103	11.9999
((((	chr19:48984261-48984519(+)$1	1	16	20	11.9999
((..	chr18:47795994-47796282(-)$1	1	97	101	11.9999
((..	chr22:41922799-41923135(-)$1	1	65	69	11.9999
((((	chr3:25705723-25706031(-)$1	1	48	52	11.9999
.)))	chr16:89349564-89349798(-)$1	1	194	198	11.9999
)..)	chr14:105707909-105708180(-)$1	1	156	160	11.9999
(((.	chr16:69154528-69154799(-)$1	1	2	6	11.9999
((((	chr6:3271374-3271636(+)$1	1	122	126	11.9999
).))	chr16:89006116-89006369(-)$1	1	178	182	11.9999
.(..	chr19:18548014-18548297(-)$1	1	24	28	11.9999
((.(	chr7:6522964-6523227(-)$1	1	13	17	11.9999
...(	chr16:85646860-85647113(+)$1	1	46	50	11.9999
))))	chr4:516178-516419(+)$1	1	115	119	11.9999
((..	chr9:134351211-134351462(+)$1	1	2	6	11.9999
)..)	chr21:45223740-45223972(+)$1	1	175	179	11.9999
....	chr14:105713508-105713747(-)$1	1	94	98	11.9999
((.(	chr3:52515576-52515817(+)$1	1	99	103	11.9999
)).(	chr16:89346605-89346824(-)$1	1	188	192	11.9999
.(((	chr4:1229004-1229246(-)$1	1	2	6	11.9999
((..	chr19:1104362-1104635(+)$1	1	52	56	11.9999
((((	chr4:762004-762266(-)$1	1	127	131	11.9999
....	chr1:155947809-155948086(-)$1	1	118	122	11.9999
(...	chr19:58991519-58991818(-)$1	1	101	105	11.9999
))..	chr19:16187671-16187996(+)$1	1	161	165	11.9999
....	chr2:25042924-25043220(+)$1	1	166	170	11.9999
....	chr3:128209094-128209344(+)$1	1	16	20	11.9999
)..)	chr16:85646662-85646900(+)$1	1	174	178	11.9999

#PSSM
G : 0.94	g : 0.05	
C : 0.94	c : 0.05	
A : 0.94	a : 0.05	
G : 0.94	g : 0.05	

#score	1019.9999999999998
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_UTR_m2_run2.nuc.txt

#NT
CCCCUCCCC	chr20:307693-308026(+)$1	333	37	46	22.9230
CCCCACCCC	chr6:43472751-43473071(+)$1	320	13	22	19.8461
ucccucccc	chr11:2159792-2159998(-)$1	206	53	62	18.6923
CUCCUCCCC	chr2:204305008-204305267(-)$1	259	104	113	18.3846
CACCUCCCC	chr19:39436713-39436997(-)$1	284	162	171	18.4615
ccccgcccc	chr3:47459103-47459380(-)$1	277	3	12	19.2307
CCCCGCCCC	chr12:7024632-7024878(+)$1	246	113	122	19.2307
CCUcucccc	chr1:224621747-224622032(-)$1	285	74	83	18.6923
CCACUCCCC	chr22:38051587-38051878(+)$1	291	42	51	18.5384
CCCCUUCCC	chr17:7311242-7311536(+)$1	294	121	130	18.5384
CCCCUCCAC	chr19:36258531-36258816(+)$1	285	78	87	18.3846
CCCCUCUCC	chr12:81331374-81331671(-)$1	297	286	295	18.7692
ucccucccc	chr11:2159851-2160062(-)$1	211	117	126	18.6923
CCCCACCCC	chr10:5024287-5024570(+)$1	283	261	270	19.8461
ccccucccc	chr17:7120364-7120650(-)$1	286	50	59	22.9230
ucccucccc	chr11:2159798-2160041(-)$1	243	96	105	18.6923
CCCCUCACC	chr17:80272918-80273250(-)$1	332	132	141	18.6153
CCCCUCCCC	chr3:12942671-12942964(-)$1	293	75	84	22.9230
ucccucccc	chr11:2159862-2160084(-)$1	222	139	148	18.6923
ccccuccuc	chr19:35532765-35533031(+)$1	266	241	250	18.5384
CCCCUCCCC	chr2:159314115-159314461(+)$1	346	110	119	22.9230
ccccucccc	chr10:43892125-43892451(-)$1	326	102	111	22.9230
CCCCUCCUC	chr6:41566871-41567150(+)$1	279	42	51	18.5384
ccccucccc	chr2:204305549-204305783(-)$1	234	5	14	22.9230
ccucucccc	chr18:29264396-29264722(-)$1	326	83	92	18.6923
CCCCCCCCC	chr11:2159581-2159787(-)$1	206	157	166	19.3076
ccccucccc	chr21:40177609-40177892(+)$1	283	153	162	22.9230
CCCCUUCCC	chr16:30759875-30760229(+)$1	354	15	24	18.5384
ccccuccuc	chr1:2241187-2241457(+)$1	270	3	12	18.5384
CCCCACCCC	chr17:36896527-36896799(-)$1	272	122	131	19.8461
CCCCCCCCC	chr11:2160150-2160352(-)$1	202	50	59	19.3076
CCCAUCCCC	chr11:2160231-2160449(-)$1	218	75	84	18.4615
CCCCUCACC	chr17:40947241-40947493(+)$1	252	26	35	18.6153
CCCCUACCC	chr3:47452180-47452452(+)$1	272	95	104	18.3846
ccccucgcc	chr11:2159642-2159867(-)$1	225	49	58	18.5384
CCCCACCCC	chr16:28890423-28890688(+)$1	265	54	63	19.8461
ccccucccc	chr22:50687462-50687753(-)$1	291	31	40	22.9230
cccgucccc	chr17:80708595-80708874(+)$1	279	96	105	18.3076
ccccucccc	chr1:211433066-211433433(+)$1	367	52	61	22.9230
CCCCACCCC	chr16:70695049-70695355(-)$1	306	22	31	19.8461
CCCCUCUCC	chr16:81744543-81744830(+)$1	287	243	252	18.7692
CCCAUCCCC	chr11:2160193-2160401(-)$1	208	27	36	18.4615
CCCCUUCCC	chr9:139849621-139849931(+)$1	310	48	57	18.5384
CCCCUGCCC	chr19:48957806-48958088(+)$1	282	104	113	18.3846
CCCCACCCC	chr19:14203680-14203912(-)$1	232	107	116	19.8461
cccaucccc	chr19:45323377-45323685(+)$1	308	200	209	18.4615
CCCCACCCC	chr16:29910392-29910655(-)$1	263	36	45	19.8461
CCCCACCCC	chr2:200322626-200322894(-)$1	268	26	35	19.8461
ccucucccc	chr3:38454988-38455323(+)$1	335	143	152	18.6923
ccccucccc	chr17:29422094-29422392(+)$1	298	15	24	22.9230
CCACUCCCC	chr7:1028464-1028702(+)$1	238	23	32	18.5384
ccccacccc	chr7:1028569-1028880(+)$1	311	13	22	19.8461
CCCCCCCCC	chr11:2160152-2160360(-)$1	208	58	67	19.3076
ucccucccc	chr11:289361-289730(+)$1	369	32	41	18.6923
ccccucccc	chr17:7154822-7155087(-)$1	265	118	127	22.9230
CCUCUCCCC	chr19:39874326-39874615(+)$1	289	175	184	18.6923
CCCCUCCCA	chr19:50129315-50129560(+)$1	245	129	138	18.0769
CGCCUCCCC	chr11:2159973-2160183(-)$1	210	90	99	18.4615
CACCUCCCC	chr19:39436809-39437077(-)$1	268	242	251	18.4615
ccccucccc	chr17:20945476-20945748(-)$1	272	44	53	22.9230
CCCCUCUCC	chr9:35829707-35829982(+)$1	275	154	163	18.7692
CCCCUCUCC	chr9:35829534-35829885(+)$1	351	327	336	18.7692
CGCCUCCCC	chr11:2159930-2160139(-)$1	209	46	55	18.4615
ccccuccgc	chr16:188255-188514(-)$1	259	24	33	18.3846

#otherMatches

#Struct PSSM
qqqqqqqqc	chr20:31611322-31611560(+)$1	238	104	113	19.8461
CCCCCKKBB	chr20:307693-308026(+)$1	333	37	46	22.9230
[ddddeeee	chr6:43472751-43473071(+)$1	320	13	22	19.8461
:::::::::	chr11:2159792-2159998(-)$1	206	53	62	18.6923
::::fffff	chr2:204305008-204305267(-)$1	259	104	113	18.3846
mmmccceee	chr19:39436713-39436997(-)$1	284	162	171	18.4615
FFF::ccc[	chr3:47459103-47459380(-)$1	277	3	12	19.2307
>>>>>>>>>	chr12:7024632-7024878(+)$1	246	113	122	19.2307
]ffffffEE	chr1:224621747-224622032(-)$1	285	74	83	18.6923
fffff::::	chr22:38051587-38051878(+)$1	291	42	51	18.5384
:::::::::	chr17:7311242-7311536(+)$1	294	121	130	18.5384
leeeee:::	chr19:36258531-36258816(+)$1	285	78	87	18.3846
c333bb]bb	chr12:81331374-81331671(-)$1	297	286	295	18.7692
:::::::::	chr11:2159851-2160062(-)$1	211	117	126	18.6923
DYYDDDDZZ	chr10:5024287-5024570(+)$1	283	261	270	19.8461
=========	chr17:7120364-7120650(-)$1	286	50	59	22.9230
:::::::::	chr11:2159798-2160041(-)$1	243	96	105	18.6923
:::a!!bb[	chr17:80272918-80273250(-)$1	332	132	141	18.6153
:::::::::	chr3:12942671-12942964(-)$1	293	75	84	22.9230
:::::::::	chr11:2159862-2160084(-)$1	222	139	148	18.6923
c:::::fff	chr19:35532765-35533031(+)$1	266	241	250	18.5384
b::::::::	chr2:159314115-159314461(+)$1	346	110	119	22.9230
:::::::::	chr10:43892125-43892451(-)$1	326	102	111	22.9230
ppppppbb2	chr6:41566871-41567150(+)$1	279	42	51	18.5384
:::::::::	chr2:204305549-204305783(-)$1	234	5	14	22.9230
WWWWWWWWW	chr18:29264396-29264722(-)$1	326	83	92	18.6923
:::::::::	chr11:2159581-2159787(-)$1	206	157	166	19.3076
CTTTTTTTT	chr21:40177609-40177892(+)$1	283	153	162	22.9230
:::::::::	chr16:30759875-30760229(+)$1	354	15	24	18.5384
:::::::::	chr1:2241187-2241457(+)$1	270	3	12	18.5384
ccc:::::c	chr17:36896527-36896799(-)$1	272	122	131	19.8461
sssssssa]	chr11:2160150-2160352(-)$1	202	50	59	19.3076
^^^^^^^^^	chr11:2160231-2160449(-)$1	218	75	84	18.4615
c[eeeee[b	chr17:40947241-40947493(+)$1	252	26	35	18.6153
^^^^^^^^^	chr3:47452180-47452452(+)$1	272	95	104	18.3846
::::::ccc	chr11:2159642-2159867(-)$1	225	49	58	18.5384
:::::::::	chr16:28890423-28890688(+)$1	265	54	63	19.8461
CCNNNNNGG	chr22:50687462-50687753(-)$1	291	31	40	22.9230
:::::::::	chr17:80708595-80708874(+)$1	279	96	105	18.3076
:::::::::	chr1:211433066-211433433(+)$1	367	52	61	22.9230
:::::::::	chr16:70695049-70695355(-)$1	306	22	31	19.8461
rrrrrrrdd	chr16:81744543-81744830(+)$1	287	243	252	18.7692
^^^^^^^^^	chr11:2160193-2160401(-)$1	208	27	36	18.4615
e^^^^^^^^	chr9:139849621-139849931(+)$1	310	48	57	18.5384
wwwwwbb44	chr19:48957806-48958088(+)$1	282	104	113	18.3846
>>>>>>>>>	chr19:14203680-14203912(-)$1	232	107	116	19.8461
:::::::::	chr19:45323377-45323685(+)$1	308	200	209	18.4615
c========	chr16:29910392-29910655(-)$1	263	36	45	19.8461
eeee[eeee	chr2:200322626-200322894(-)$1	268	26	35	19.8461
:::::::::	chr3:38454988-38455323(+)$1	335	143	152	18.6923
:::::::::	chr17:29422094-29422392(+)$1	298	15	24	22.9230
:::::::::	chr7:1028464-1028702(+)$1	238	23	32	18.5384
{FFFFFFJJ	chr7:1028569-1028880(+)$1	311	13	22	19.8461
sssssssa]	chr11:2160152-2160360(-)$1	208	58	67	19.3076
CCC:::::c	chr11:289361-289730(+)$1	369	32	41	18.6923
:::::::::	chr17:7154822-7155087(-)$1	265	118	127	22.9230
ZZZFFFFFF	chr19:39874326-39874615(+)$1	289	175	184	18.6923
ggggggg22	chr19:50129315-50129560(+)$1	245	129	138	18.0769
eee::::::	chr11:2159973-2160183(-)$1	210	90	99	18.4615
_____FFFF	chr19:39436809-39437077(-)$1	268	242	251	18.4615
DDLLLBBCC	chr17:20945476-20945748(-)$1	272	44	53	22.9230
:::::::::	chr9:35829707-35829982(+)$1	275	154	163	18.7692
:::::::::	chr9:35829534-35829885(+)$1	351	327	336	18.7692
:cccooooo	chr11:2159930-2160139(-)$1	209	46	55	18.4615
&&&&&&&dd	chr16:188255-188514(-)$1	259	24	33	18.3846

#DB
........)	chr20:31611322-31611560(+)$1	1	104	113	19.8461
(((((..((	chr20:307693-308026(+)$1	1	37	46	22.9230
.((((((((	chr6:43472751-43473071(+)$1	1	13	22	19.8461
.........	chr11:2159792-2159998(-)$1	1	53	62	18.6923
....(((((	chr2:204305008-204305267(-)$1	1	104	113	18.3846
...)))(((	chr19:39436713-39436997(-)$1	1	162	171	18.4615
(((..(((.	chr3:47459103-47459380(-)$1	1	3	12	19.2307
.........	chr12:7024632-7024878(+)$1	1	113	122	19.2307
.))))))((	chr1:224621747-224622032(-)$1	1	74	83	18.6923
)))))....	chr22:38051587-38051878(+)$1	1	42	51	18.5384
.........	chr17:7311242-7311536(+)$1	1	121	130	18.5384
.)))))...	chr19:36258531-36258816(+)$1	1	78	87	18.3846
)...)).))	chr12:81331374-81331671(-)$1	1	286	295	18.7692
.........	chr11:2159851-2160062(-)$1	1	117	126	18.6923
)..))))..	chr10:5024287-5024570(+)$1	1	261	270	19.8461
(((((((((	chr17:7120364-7120650(-)$1	1	50	59	22.9230
.........	chr11:2159798-2160041(-)$1	1	96	105	18.6923
...(..((.	chr17:80272918-80273250(-)$1	1	132	141	18.6153
.........	chr3:12942671-12942964(-)$1	1	75	84	22.9230
.........	chr11:2159862-2160084(-)$1	1	139	148	18.6923
).....(((	chr19:35532765-35533031(+)$1	1	241	250	18.5384
)........	chr2:159314115-159314461(+)$1	1	110	119	22.9230
.........	chr10:43892125-43892451(-)$1	1	102	111	22.9230
......)).	chr6:41566871-41567150(+)$1	1	42	51	18.5384
.........	chr2:204305549-204305783(-)$1	1	5	14	22.9230
.........	chr18:29264396-29264722(-)$1	1	83	92	18.6923
.........	chr11:2159581-2159787(-)$1	1	157	166	19.3076
(........	chr21:40177609-40177892(+)$1	1	153	162	22.9230
.........	chr16:30759875-30760229(+)$1	1	15	24	18.5384
.........	chr1:2241187-2241457(+)$1	1	3	12	18.5384
))).....(	chr17:36896527-36896799(-)$1	1	122	131	19.8461
.......).	chr11:2160150-2160352(-)$1	1	50	59	19.3076
.........	chr11:2160231-2160449(-)$1	1	75	84	18.4615
(.(((((.(	chr17:40947241-40947493(+)$1	1	26	35	18.6153
.........	chr3:47452180-47452452(+)$1	1	95	104	18.3846
......(((	chr11:2159642-2159867(-)$1	1	49	58	18.5384
.........	chr16:28890423-28890688(+)$1	1	54	63	19.8461
((.....((	chr22:50687462-50687753(-)$1	1	31	40	22.9230
.........	chr17:80708595-80708874(+)$1	1	96	105	18.3076
.........	chr1:211433066-211433433(+)$1	1	52	61	22.9230
.........	chr16:70695049-70695355(-)$1	1	22	31	19.8461
.......))	chr16:81744543-81744830(+)$1	1	243	252	18.7692
.........	chr11:2160193-2160401(-)$1	1	27	36	18.4615
(........	chr9:139849621-139849931(+)$1	1	48	57	18.5384
.....))..	chr19:48957806-48958088(+)$1	1	104	113	18.3846
.........	chr19:14203680-14203912(-)$1	1	107	116	19.8461
.........	chr19:45323377-45323685(+)$1	1	200	209	18.4615
)((((((((	chr16:29910392-29910655(-)$1	1	36	45	19.8461
((((.((((	chr2:200322626-200322894(-)$1	1	26	35	19.8461
.........	chr3:38454988-38455323(+)$1	1	143	152	18.6923
.........	chr17:29422094-29422392(+)$1	1	15	24	22.9230
.........	chr7:1028464-1028702(+)$1	1	23	32	18.5384
.((((((((	chr7:1028569-1028880(+)$1	1	13	22	19.8461
.......).	chr11:2160152-2160360(-)$1	1	58	67	19.3076
(((.....(	chr11:289361-289730(+)$1	1	32	41	18.6923
.........	chr17:7154822-7155087(-)$1	1	118	127	22.9230
...))))))	chr19:39874326-39874615(+)$1	1	175	184	18.6923
)))))))..	chr19:50129315-50129560(+)$1	1	129	138	18.0769
)))......	chr11:2159973-2160183(-)$1	1	90	99	18.4615
.....))))	chr19:39436809-39437077(-)$1	1	242	251	18.4615
((...((((	chr17:20945476-20945748(-)$1	1	44	53	22.9230
.........	chr9:35829707-35829982(+)$1	1	154	163	18.7692
.........	chr9:35829534-35829885(+)$1	1	327	336	18.7692
.(((.....	chr11:2159930-2160139(-)$1	1	46	55	18.4615
.......((	chr16:188255-188514(-)$1	1	24	33	18.3846

#PSSM
C : 0.61	c : 0.30	u : 0.07	
C : 0.53	c : 0.38	A : 0.03	G : 0.03	U : 0.01	
C : 0.55	c : 0.35	U : 0.03	A : 0.03	u : 0.03	
C : 0.56	c : 0.36	A : 0.03	g : 0.01	a : 0.01	
U : 0.41	u : 0.35	A : 0.12	C : 0.04	a : 0.03	g : 0.01	G : 0.01	
C : 0.52	c : 0.40	U : 0.04	A : 0.01	G : 0.01	
C : 0.50	c : 0.38	U : 0.06	A : 0.03	g : 0.01	
C : 0.56	c : 0.35	u : 0.03	A : 0.01	U : 0.01	g : 0.01	
C : 0.58	c : 0.40	A : 0.01	

#score	1274.8461538461536
#seq	65
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_UTR_m3_run1.nuc.txt

#NT
cUG	chr3:184039713-184039955(+)$1	242	79	82	8.9999
CUG	chr6:32945846-32946075(+)$1	229	77	80	8.9999
CUG	chr2:131975720-131975982(+)$1	262	3	6	8.9999
CUG	chr3:14199955-14200279(-)$1	324	24	27	8.9999
CUG	chr1:39790263-39790495(+)$1	232	57	60	8.9999
CUG	chr22:21224523-21224820(+)$1	297	5	8	8.9999
CUG	chr11:47446637-47446893(-)$1	256	8	11	8.9999
CUG	chr8:145650507-145650760(-)$1	253	45	48	8.9999
CUG	chr15:63352973-63353240(+)$1	267	5	8	8.9999
CUG	chr14:73577688-73577954(+)$1	266	6	9	8.9999
cug	chr2:70130208-70130451(+)$1	243	0	3	8.9999
CUG	chr22:50018193-50018424(-)$1	231	11	14	8.9999
CUG	chr3:9489509-9489768(+)$1	259	14	17	8.9999
CUG	chr2:187368679-187368932(+)$1	253	43	46	8.9999
CUG	chr16:89350278-89350557(-)$1	279	42	45	8.9999
CUG	chr16:85644940-85645194(+)$1	254	2	5	8.9999
CUG	chr15:69072334-69072584(-)$1	250	25	28	8.9999
CUG	chr5:137501416-137501664(-)$1	248	8	11	8.9999
CUG	chr11:3023091-3023381(-)$1	290	13	16	8.9999
CUG	chr17:17722628-17722851(-)$1	223	10	13	8.9999
CUG	chr21:33974496-33974779(-)$1	283	84	87	8.9999
CUG	chr4:76580147-76580498(-)$1	351	109	112	8.9999
CUG	chr9:134350854-134351101(+)$1	247	21	24	8.9999
CUG	chr22:22319624-22319847(-)$1	223	84	87	8.9999
CUG	chr7:6461254-6461493(-)$1	239	11	14	8.9999
CUG	chr12:132445031-132445279(+)$1	248	32	35	8.9999
CUG	chr17:4575257-4575595(-)$1	338	178	181	8.9999
CUG	chr16:31045577-31045901(+)$1	324	44	47	8.9999
CUG	chr15:75651951-75652196(-)$1	245	14	17	8.9999
CUG	chr7:5569467-5569694(-)$1	227	14	17	8.9999
CUG	chr5:70785345-70785619(+)$1	274	94	97	8.9999
CUG	chr7:98997833-98998055(-)$1	222	89	92	8.9999
CUG	chr14:105929467-105929693(+)$1	226	5	8	8.9999
CUG	chr14:56099876-56100152(+)$1	276	139	142	8.9999
CUG	chr8:38854436-38854722(+)$1	286	118	121	8.9999
CUG	chr16:89346589-89346878(-)$1	289	7	10	8.9999
CUG	chr3:47043104-47043319(+)$1	215	27	30	8.9999
CUG	chr8:98656633-98656897(+)$1	264	1	4	8.9999
cug	chrX:152954271-152954524(+)$1	253	163	166	8.9999
CUG	chr15:44580979-44581234(+)$1	255	49	52	8.9999
CUG	chr7:72988594-72988890(-)$1	296	18	21	8.9999
CUG	chr2:132021392-132021670(+)$1	278	15	18	8.9999
CUG	chr1:59249180-59249443(-)$1	263	34	37	8.9999
CUG	chr19:5661492-5661721(+)$1	229	14	17	8.9999
CUG	chr5:65474543-65474846(+)$1	303	73	76	8.9999
CUG	chr22:20918845-20919075(+)$1	230	142	145	8.9999
CUG	chr16:4910572-4910894(+)$1	322	10	13	8.9999
CUG	chr5:140958057-140958292(-)$1	235	78	81	8.9999
CUG	chr11:66391683-66391921(+)$1	238	127	130	8.9999
CUG	chrX:118986701-118986995(-)$1	294	149	152	8.9999
CUG	chr7:5569349-5569639(-)$1	290	33	36	8.9999
CUG	chr15:63351711-63351977(+)$1	266	117	120	8.9999
CUG	chr20:61912565-61912782(+)$1	217	4	7	8.9999
CUG	chr4:174253016-174253273(-)$1	257	150	153	8.9999
CUG	chr19:47228694-47228956(-)$1	262	3	6	8.9999
cug	chrX:152954324-152954568(+)$1	244	110	113	8.9999
CUG	chrX:152937408-152937655(-)$1	247	25	28	8.9999
CUG	chr3:184040321-184040577(+)$1	256	47	50	8.9999
CUG	chr22:20918795-20919036(+)$1	241	192	195	8.9999
CUG	chr17:48823804-48824098(+)$1	294	62	65	8.9999
cUG	chr3:128211706-128211984(+)$1	278	76	79	8.9999
CUG	chr1:32833967-32834238(-)$1	271	46	49	8.9999
CUG	chr1:39776511-39776770(+)$1	259	6	9	8.9999
CUG	chrX:53439746-53440050(-)$1	304	13	16	8.9999
CUG	chr3:196214183-196214493(-)$1	310	179	182	8.9999
CUG	chr7:5781130-5781385(-)$1	255	99	102	8.9999
CUG	chr1:70716368-70716692(+)$1	324	31	34	8.9999
CUG	chr5:180650618-180650901(+)$1	283	138	141	8.9999
CUG	chr7:102065468-102065714(+)$1	246	28	31	8.9999
CUG	chr1:29475196-29475422(-)$1	226	211	214	8.9999
CUG	chr5:70751517-70751808(+)$1	291	59	62	8.9999
CUG	chr20:62367806-62368124(+)$1	318	30	33	8.9999
CUG	chr11:65820043-65820279(+)$1	236	42	45	8.9999
cug	chr2:61408354-61408562(+)$1	208	17	20	8.9999
CUG	chr19:1817133-1817391(-)$1	258	0	3	8.9999
CUG	chr2:172544207-172544474(+)$1	267	80	83	8.9999
CUG	chr19:10260471-10260743(-)$1	272	100	103	8.9999
CUG	chr16:75675450-75675705(-)$1	255	88	91	8.9999
CUG	chr11:129992153-129992488(+)$1	335	57	60	8.9999
CUG	chr1:235324228-235324483(-)$1	255	19	22	8.9999
CUG	chr1:46083632-46083932(+)$1	300	26	29	8.9999
cug	chr17:2614805-2615049(-)$1	244	221	224	8.9999
CUG	chr3:42676714-42676959(+)$1	245	27	30	8.9999
CUG	chr16:89350383-89350616(-)$1	233	101	104	8.9999
cug	chr14:102549270-102549477(-)$1	207	64	67	8.9999
cug	chr7:154760171-154760469(-)$1	298	47	50	8.9999
CUG	chr16:89348959-89349230(-)$1	271	5	8	8.9999
CUG	chr22:20918734-20918988(+)$1	254	7	10	8.9999
CUG	chr16:89351878-89352124(-)$1	246	4	7	8.9999
CUG	chrX:152954870-152955129(+)$1	259	58	61	8.9999
CUG	chr7:42957058-42957322(-)$1	264	80	83	8.9999
CUG	chr11:35684370-35684617(+)$1	247	111	114	8.9999
CUg	chr14:102551066-102551299(-)$1	233	4	7	8.9999
CUG	chr9:140610979-140611250(+)$1	271	64	67	8.9999
CUG	chr17:7849081-7849342(+)$1	261	26	29	8.9999
CUG	chr16:89357113-89357335(-)$1	222	26	29	8.9999

#otherMatches

#Struct PSSM
:::	chr20:62572796-62573124(-)$1	328	11	14	8.9999
cc5	chr3:184039713-184039955(+)$1	242	79	82	8.9999
qbb	chr6:32945846-32946075(+)$1	229	77	80	8.9999
GGG	chr2:131975720-131975982(+)$1	262	3	6	8.9999
[bb	chr3:14199955-14200279(-)$1	324	24	27	8.9999
ffo	chr1:39790263-39790495(+)$1	232	57	60	8.9999
CCC	chr22:21224523-21224820(+)$1	297	5	8	8.9999
FFF	chr11:47446637-47446893(-)$1	256	8	11	8.9999
KKE	chr8:145650507-145650760(-)$1	253	45	48	8.9999
GGG	chr15:63352973-63353240(+)$1	267	5	8	8.9999
DDD	chr14:73577688-73577954(+)$1	266	6	9	8.9999
:cc	chr2:70130208-70130451(+)$1	243	0	3	8.9999
d[e	chr22:50018193-50018424(-)$1	231	11	14	8.9999
bb[	chr3:9489509-9489768(+)$1	259	14	17	8.9999
cc[	chr2:187368679-187368932(+)$1	253	43	46	8.9999
ccc	chr16:89350278-89350557(-)$1	279	42	45	8.9999
:gg	chr16:85644940-85645194(+)$1	254	2	5	8.9999
bee	chr15:69072334-69072584(-)$1	250	25	28	8.9999
A{B	chr5:137501416-137501664(-)$1	248	8	11	8.9999
ee#	chr11:3023091-3023381(-)$1	290	13	16	8.9999
[dd	chr17:17722628-17722851(-)$1	223	10	13	8.9999
eee	chr21:33974496-33974779(-)$1	283	84	87	8.9999
ccc	chr4:76580147-76580498(-)$1	351	109	112	8.9999
GGG	chr9:134350854-134351101(+)$1	247	21	24	8.9999
:ff	chr22:22319624-22319847(-)$1	223	84	87	8.9999
B{B	chr7:6461254-6461493(-)$1	239	11	14	8.9999
d""	chr12:132445031-132445279(+)$1	248	32	35	8.9999
ee$	chr17:4575257-4575595(-)$1	338	178	181	8.9999
fff	chr16:31045577-31045901(+)$1	324	44	47	8.9999
mmm	chr15:75651951-75652196(-)$1	245	14	17	8.9999
FFF	chr7:5569467-5569694(-)$1	227	14	17	8.9999
ggg	chr5:70785345-70785619(+)$1	274	94	97	8.9999
mbb	chr7:98997833-98998055(-)$1	222	89	92	8.9999
:::	chr14:105929467-105929693(+)$1	226	5	8	8.9999
ddd	chr14:56099876-56100152(+)$1	276	139	142	8.9999
ee[	chr8:38854436-38854722(+)$1	286	118	121	8.9999
d[b	chr16:89346589-89346878(-)$1	289	7	10	8.9999
::c	chr3:47043104-47043319(+)$1	215	27	30	8.9999
BA{	chr8:98656633-98656897(+)$1	264	1	4	8.9999
fff	chrX:152954271-152954524(+)$1	253	163	166	8.9999
ggg	chr15:44580979-44581234(+)$1	255	49	52	8.9999
:EE	chr7:72988594-72988890(-)$1	296	18	21	8.9999
B{A	chr2:132021392-132021670(+)$1	278	15	18	8.9999
Dcc	chr1:59249180-59249443(-)$1	263	34	37	8.9999
GGG	chr19:5661492-5661721(+)$1	229	14	17	8.9999
::d	chr5:65474543-65474846(+)$1	303	73	76	8.9999
fff	chr22:20918845-20919075(+)$1	230	142	145	8.9999
LHH	chr16:4910572-4910894(+)$1	322	10	13	8.9999
fff	chr5:140958057-140958292(-)$1	235	78	81	8.9999
!!b	chr11:66391683-66391921(+)$1	238	127	130	8.9999
FFF	chrX:118986701-118986995(-)$1	294	149	152	8.9999
SSS	chr7:5569349-5569639(-)$1	290	33	36	8.9999
eee	chr15:63351711-63351977(+)$1	266	117	120	8.9999
ggg	chr20:61912565-61912782(+)$1	217	4	7	8.9999
fff	chr4:174253016-174253273(-)$1	257	150	153	8.9999
EEE	chr19:47228694-47228956(-)$1	262	3	6	8.9999
fff	chrX:152954324-152954568(+)$1	244	110	113	8.9999
JJJ	chrX:152937408-152937655(-)$1	247	25	28	8.9999
ddd	chr3:184040321-184040577(+)$1	256	47	50	8.9999
fff	chr22:20918795-20919036(+)$1	241	192	195	8.9999
::G	chr17:48823804-48824098(+)$1	294	62	65	8.9999
ddd	chr3:128211706-128211984(+)$1	278	76	79	8.9999
""a	chr1:32833967-32834238(-)$1	271	46	49	8.9999
DDD	chr1:39776511-39776770(+)$1	259	6	9	8.9999
CC{	chrX:53439746-53440050(-)$1	304	13	16	8.9999
gg5	chr3:196214183-196214493(-)$1	310	179	182	8.9999
fff	chr7:5781130-5781385(-)$1	255	99	102	8.9999
dd]	chr1:70716368-70716692(+)$1	324	31	34	8.9999
cc3	chr5:180650618-180650901(+)$1	283	138	141	8.9999
eee	chr7:102065468-102065714(+)$1	246	28	31	8.9999
CCC	chr1:29475196-29475422(-)$1	226	211	214	8.9999
hhh	chr5:70751517-70751808(+)$1	291	59	62	8.9999
eee	chr20:62367806-62368124(+)$1	318	30	33	8.9999
cc!	chr11:65820043-65820279(+)$1	236	42	45	8.9999
ddd	chr2:61408354-61408562(+)$1	208	17	20	8.9999
:::	chr19:1817133-1817391(-)$1	258	0	3	8.9999
22=	chr2:172544207-172544474(+)$1	267	80	83	8.9999
ooo	chr19:10260471-10260743(-)$1	272	100	103	8.9999
ff'	chr16:75675450-75675705(-)$1	255	88	91	8.9999
ggg	chr11:129992153-129992488(+)$1	335	57	60	8.9999
)))	chr1:235324228-235324483(-)$1	255	19	22	8.9999
::H	chr1:46083632-46083932(+)$1	300	26	29	8.9999
E}B	chr17:2614805-2615049(-)$1	244	221	224	8.9999
ccc	chr3:42676714-42676959(+)$1	245	27	30	8.9999
ee[	chr16:89350383-89350616(-)$1	233	101	104	8.9999
LCC	chr14:102549270-102549477(-)$1	207	64	67	8.9999
DDD	chr7:154760171-154760469(-)$1	298	47	50	8.9999
DD:	chr16:89348959-89349230(-)$1	271	5	8	8.9999
hhh	chr22:20918734-20918988(+)$1	254	7	10	8.9999
cc[	chr16:89351878-89352124(-)$1	246	4	7	8.9999
f:c	chrX:152954870-152955129(+)$1	259	58	61	8.9999
ddd	chr7:42957058-42957322(-)$1	264	80	83	8.9999
a::	chr11:35684370-35684617(+)$1	247	111	114	8.9999
:::	chr14:102551066-102551299(-)$1	233	4	7	8.9999
III	chr9:140610979-140611250(+)$1	271	64	67	8.9999
fcc	chr17:7849081-7849342(+)$1	261	26	29	8.9999
ddd	chr16:89357113-89357335(-)$1	222	26	29	8.9999

#DB
...	chr20:62572796-62573124(-)$1	1	11	14	8.9999
)).	chr3:184039713-184039955(+)$1	1	79	82	8.9999
.))	chr6:32945846-32946075(+)$1	1	77	80	8.9999
(((	chr2:131975720-131975982(+)$1	1	3	6	8.9999
.((	chr3:14199955-14200279(-)$1	1	24	27	8.9999
((.	chr1:39790263-39790495(+)$1	1	57	60	8.9999
(((	chr22:21224523-21224820(+)$1	1	5	8	8.9999
(((	chr11:47446637-47446893(-)$1	1	8	11	8.9999
..(	chr8:145650507-145650760(-)$1	1	45	48	8.9999
(((	chr15:63352973-63353240(+)$1	1	5	8	8.9999
(((	chr14:73577688-73577954(+)$1	1	6	9	8.9999
.((	chr2:70130208-70130451(+)$1	1	0	3	8.9999
(.(	chr22:50018193-50018424(-)$1	1	11	14	8.9999
((.	chr3:9489509-9489768(+)$1	1	14	17	8.9999
((.	chr2:187368679-187368932(+)$1	1	43	46	8.9999
(((	chr16:89350278-89350557(-)$1	1	42	45	8.9999
.((	chr16:85644940-85645194(+)$1	1	2	5	8.9999
)))	chr15:69072334-69072584(-)$1	1	25	28	8.9999
(.(	chr5:137501416-137501664(-)$1	1	8	11	8.9999
((.	chr11:3023091-3023381(-)$1	1	13	16	8.9999
.((	chr17:17722628-17722851(-)$1	1	10	13	8.9999
(((	chr21:33974496-33974779(-)$1	1	84	87	8.9999
(((	chr4:76580147-76580498(-)$1	1	109	112	8.9999
(((	chr9:134350854-134351101(+)$1	1	21	24	8.9999
.((	chr22:22319624-22319847(-)$1	1	84	87	8.9999
(.(	chr7:6461254-6461493(-)$1	1	11	14	8.9999
(..	chr12:132445031-132445279(+)$1	1	32	35	8.9999
((.	chr17:4575257-4575595(-)$1	1	178	181	8.9999
)))	chr16:31045577-31045901(+)$1	1	44	47	8.9999
...	chr15:75651951-75652196(-)$1	1	14	17	8.9999
(((	chr7:5569467-5569694(-)$1	1	14	17	8.9999
(((	chr5:70785345-70785619(+)$1	1	94	97	8.9999
.))	chr7:98997833-98998055(-)$1	1	89	92	8.9999
...	chr14:105929467-105929693(+)$1	1	5	8	8.9999
(((	chr14:56099876-56100152(+)$1	1	139	142	8.9999
((.	chr8:38854436-38854722(+)$1	1	118	121	8.9999
(.(	chr16:89346589-89346878(-)$1	1	7	10	8.9999
..(	chr3:47043104-47043319(+)$1	1	27	30	8.9999
((.	chr8:98656633-98656897(+)$1	1	1	4	8.9999
(((	chrX:152954271-152954524(+)$1	1	163	166	8.9999
)))	chr15:44580979-44581234(+)$1	1	49	52	8.9999
.((	chr7:72988594-72988890(-)$1	1	18	21	8.9999
(.(	chr2:132021392-132021670(+)$1	1	15	18	8.9999
(((	chr1:59249180-59249443(-)$1	1	34	37	8.9999
(((	chr19:5661492-5661721(+)$1	1	14	17	8.9999
..(	chr5:65474543-65474846(+)$1	1	73	76	8.9999
)))	chr22:20918845-20919075(+)$1	1	142	145	8.9999
.((	chr16:4910572-4910894(+)$1	1	10	13	8.9999
(((	chr5:140958057-140958292(-)$1	1	78	81	8.9999
..(	chr11:66391683-66391921(+)$1	1	127	130	8.9999
(((	chrX:118986701-118986995(-)$1	1	149	152	8.9999
...	chr7:5569349-5569639(-)$1	1	33	36	8.9999
)))	chr15:63351711-63351977(+)$1	1	117	120	8.9999
(((	chr20:61912565-61912782(+)$1	1	4	7	8.9999
)))	chr4:174253016-174253273(-)$1	1	150	153	8.9999
(((	chr19:47228694-47228956(-)$1	1	3	6	8.9999
(((	chrX:152954324-152954568(+)$1	1	110	113	8.9999
(((	chrX:152937408-152937655(-)$1	1	25	28	8.9999
)))	chr3:184040321-184040577(+)$1	1	47	50	8.9999
)))	chr22:20918795-20919036(+)$1	1	192	195	8.9999
..(	chr17:48823804-48824098(+)$1	1	62	65	8.9999
(((	chr3:128211706-128211984(+)$1	1	76	79	8.9999
..(	chr1:32833967-32834238(-)$1	1	46	49	8.9999
(((	chr1:39776511-39776770(+)$1	1	6	9	8.9999
((.	chrX:53439746-53440050(-)$1	1	13	16	8.9999
)).	chr3:196214183-196214493(-)$1	1	179	182	8.9999
(((	chr7:5781130-5781385(-)$1	1	99	102	8.9999
)).	chr1:70716368-70716692(+)$1	1	31	34	8.9999
)).	chr5:180650618-180650901(+)$1	1	138	141	8.9999
(((	chr7:102065468-102065714(+)$1	1	28	31	8.9999
)))	chr1:29475196-29475422(-)$1	1	211	214	8.9999
)))	chr5:70751517-70751808(+)$1	1	59	62	8.9999
(((	chr20:62367806-62368124(+)$1	1	30	33	8.9999
((.	chr11:65820043-65820279(+)$1	1	42	45	8.9999
)))	chr2:61408354-61408562(+)$1	1	17	20	8.9999
...	chr19:1817133-1817391(-)$1	1	0	3	8.9999
..)	chr2:172544207-172544474(+)$1	1	80	83	8.9999
...	chr19:10260471-10260743(-)$1	1	100	103	8.9999
((.	chr16:75675450-75675705(-)$1	1	88	91	8.9999
)))	chr11:129992153-129992488(+)$1	1	57	60	8.9999
...	chr1:235324228-235324483(-)$1	1	19	22	8.9999
..(	chr1:46083632-46083932(+)$1	1	26	29	8.9999
).)	chr17:2614805-2615049(-)$1	1	221	224	8.9999
(((	chr3:42676714-42676959(+)$1	1	27	30	8.9999
((.	chr16:89350383-89350616(-)$1	1	101	104	8.9999
.((	chr14:102549270-102549477(-)$1	1	64	67	8.9999
(((	chr7:154760171-154760469(-)$1	1	47	50	8.9999
((.	chr16:89348959-89349230(-)$1	1	5	8	8.9999
(((	chr22:20918734-20918988(+)$1	1	7	10	8.9999
((.	chr16:89351878-89352124(-)$1	1	4	7	8.9999
).(	chrX:152954870-152955129(+)$1	1	58	61	8.9999
)))	chr7:42957058-42957322(-)$1	1	80	83	8.9999
)..	chr11:35684370-35684617(+)$1	1	111	114	8.9999
...	chr14:102551066-102551299(-)$1	1	4	7	8.9999
(((	chr9:140610979-140611250(+)$1	1	64	67	8.9999
(((	chr17:7849081-7849342(+)$1	1	26	29	8.9999
(((	chr16:89357113-89357335(-)$1	1	26	29	8.9999

#PSSM
C : 0.90	c : 0.09	
U : 0.92	u : 0.07	
G : 0.91	g : 0.08	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_transcript_m1_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
nnnnna]dddd]bb::::::::HHHHHHHH::::::::::dddd[eeeeeooooooeeeee22dddd::::cccpppppppccc:::::::::HHHHHHHHGGGGGGGOOOOOODDDDHHHHHHHH::::::::::::dddd[fffffftttttttttttffffffdddd:hhhhhhhhaooooooa]hhhhhhhh:::bbccc[a[bb[ggggggg[ccc!!cccpppppppccc22cccgggggggbb]a333ccc]bb::::HHHHHHHH}DDDD______GGGGGGG:bboooooobb::::	chr11:57244366-57244697(+)$1	331	15	321	918.0000

#DB
.....).)))).))........((((((((..........((((.(((((......)))))..))))....(((.......))).........))))))))(((((((......((((((((((((............((((.((((((...........)))))))))).(((((((((......).))))))))...(((((.(.((.(((((((.(((..(((.......)))..)))))))))))).)...))).))....)))))))).))))......))))))).((......))....	chr11:57244366-57244697(+)$1	1	15	321	918.0000

#PSSM
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	

#score	918.0
#seq	1
#width	306
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_UTR_m3_run2.nuc.txt

#NT
GGGCC	chr11:66052294-66052537(-)$1	243	40	45	15.0000
GGGCC	chr16:31105944-31106185(-)$1	241	47	52	15.0000
GGGCC	chr20:30156961-30157253(+)$1	292	85	90	15.0000
GGGCC	chr14:21485033-21485292(-)$1	259	148	153	15.0000
GGGCC	chr19:896466-896728(-)$1	262	143	148	15.0000
GGGCC	chr20:2442304-2442543(-)$1	239	24	29	15.0000
GGGCC	chr17:79974823-79975058(+)$1	235	4	9	15.0000
GGGCC	chr16:90002247-90002511(+)$1	264	3	8	15.0000
GGGCC	chr9:139942604-139942888(-)$1	284	190	195	15.0000
GGGCC	chr9:139942688-139943015(-)$1	327	317	322	15.0000
GGGCC	chr20:32441474-32441707(+)$1	233	24	29	15.0000
GGGCC	chr7:44552209-44552477(-)$1	268	3	8	15.0000
GGGCC	chr3:47893522-47893764(-)$1	242	160	165	15.0000
GGGCC	chr11:63971656-63971901(+)$1	245	122	127	15.0000
GGGCC	chr7:150750847-150751157(-)$1	310	89	94	15.0000
GGGCC	chr5:150408069-150408379(+)$1	310	57	62	15.0000
GGGCC	chr12:6601477-6601726(-)$1	249	128	133	15.0000
GGGCC	chr16:75263114-75263361(-)$1	247	125	130	15.0000
GGGCC	chr17:4848976-4849217(-)$1	241	107	112	15.0000
GGGCC	chr17:7417501-7417743(+)$1	242	22	27	15.0000
GGGCC	chr5:150404834-150405064(+)$1	230	206	211	15.0000
GGGCC	chr11:1774032-1774249(-)$1	217	5	10	15.0000
GGGCC	chr9:139756495-139756743(-)$1	248	88	93	15.0000
GGGCC	chr3:129033765-129033976(-)$1	211	0	5	15.0000
GGGCC	chr7:149576323-149576593(+)$1	270	226	231	15.0000
gggcc	chr7:77166699-77166971(+)$1	272	130	135	15.0000
GGGCC	chr1:1375443-1375789(+)$1	346	62	67	15.0000
GGGCC	chr5:175957492-175957745(-)$1	253	220	225	15.0000
GGGCC	chr2:219128808-219129106(-)$1	298	29	34	15.0000
GGGCC	chr19:5691498-5691754(+)$1	256	11	16	15.0000
GGGCC	chr20:60962867-60963071(+)$1	204	86	91	15.0000
GGGCC	chr15:90328295-90328588(-)$1	293	79	84	15.0000
GGGCC	chr19:59067138-59067394(-)$1	256	3	8	15.0000
GGGCC	chr1:26144475-26144756(+)$1	281	31	36	15.0000
GGGCC	chr6:1624049-1624381(-)$1	332	125	130	15.0000
GGGCC	chr11:838545-838806(+)$1	261	56	61	15.0000
GGGCC	chr11:62382904-62383234(-)$1	330	28	33	15.0000
GGGCC	chr16:97170-97570(-)$1	400	140	145	15.0000
GGGCC	chr1:153949880-153950139(-)$1	259	47	52	15.0000
GGGCC	chr19:49378976-49379318(+)$1	342	63	68	15.0000
GGGCC	chr17:46148197-46148448(-)$1	251	146	151	15.0000
GGGCC	chr11:67379746-67380014(+)$1	268	35	40	15.0000
GGGCC	chr1:11708503-11708792(-)$1	289	1	6	15.0000
GGGCC	chr22:38062651-38062898(+)$1	247	215	220	15.0000
GGGCC	chr19:2321684-2321923(-)$1	239	145	150	15.0000
GGGCC	chr19:42751656-42751898(-)$1	242	55	60	15.0000
GGGCC	chr8:98863773-98864027(+)$1	254	234	239	15.0000
GGGCC	chrX:152966092-152966405(-)$1	313	14	19	15.0000
GGGCC	chr7:99564596-99564850(-)$1	254	49	54	15.0000

#otherMatches

#Struct PSSM
fffff	chr3:128338992-128339295(-)$1	303	63	68	15.0000
eeeee	chr11:66052294-66052537(-)$1	243	40	45	15.0000
eeeee	chr16:31105944-31106185(-)$1	241	47	52	15.0000
dddd3	chr20:30156961-30157253(+)$1	292	85	90	15.0000
ooodd	chr14:21485033-21485292(-)$1	259	148	153	15.0000
JJJJ:	chr19:896466-896728(-)$1	262	143	148	15.0000
CCCee	chr20:2442304-2442543(-)$1	239	24	29	15.0000
{CCCK	chr17:79974823-79975058(+)$1	235	4	9	15.0000
eee!!	chr16:90002247-90002511(+)$1	264	3	8	15.0000
hhhhh	chr9:139942604-139942888(-)$1	284	190	195	15.0000
EEE~~	chr9:139942688-139943015(-)$1	327	317	322	15.0000
==[dd	chr20:32441474-32441707(+)$1	233	24	29	15.0000
CCC:f	chr7:44552209-44552477(-)$1	268	3	8	15.0000
c:FFF	chr3:47893522-47893764(-)$1	242	160	165	15.0000
vccc]	chr11:63971656-63971901(+)$1	245	122	127	15.0000
hhhcc	chr7:150750847-150751157(-)$1	310	89	94	15.0000
fff[c	chr5:150408069-150408379(+)$1	310	57	62	15.0000
fffff	chr12:6601477-6601726(-)$1	249	128	133	15.0000
EEEBB	chr16:75263114-75263361(-)$1	247	125	130	15.0000
dddpp	chr17:4848976-4849217(-)$1	241	107	112	15.0000
DDDD:	chr17:7417501-7417743(+)$1	242	22	27	15.0000
eeeee	chr5:150404834-150405064(+)$1	230	206	211	15.0000
fffff	chr11:1774032-1774249(-)$1	217	5	10	15.0000
ccc22	chr9:139756495-139756743(-)$1	248	88	93	15.0000
A{CCC	chr3:129033765-129033976(-)$1	211	0	5	15.0000
cccbb	chr7:149576323-149576593(+)$1	270	226	231	15.0000
aoooo	chr7:77166699-77166971(+)$1	272	130	135	15.0000
ggg:D	chr1:1375443-1375789(+)$1	346	62	67	15.0000
cccee	chr5:175957492-175957745(-)$1	253	220	225	15.0000
ggggg	chr2:219128808-219129106(-)$1	298	29	34	15.0000
ggg[b	chr19:5691498-5691754(+)$1	256	11	16	15.0000
g[abb	chr20:60962867-60963071(+)$1	204	86	91	15.0000
dddd[	chr15:90328295-90328588(-)$1	293	79	84	15.0000
gggg[	chr19:59067138-59067394(-)$1	256	3	8	15.0000
GGGKK	chr1:26144475-26144756(+)$1	281	31	36	15.0000
fffll	chr6:1624049-1624381(-)$1	332	125	130	15.0000
eee""	chr11:838545-838806(+)$1	261	56	61	15.0000
FF{A{	chr11:62382904-62383234(-)$1	330	28	33	15.0000
fffff	chr16:97170-97570(-)$1	400	140	145	15.0000
eeeff	chr1:153949880-153950139(-)$1	259	47	52	15.0000
iiiim	chr19:49378976-49379318(+)$1	342	63	68	15.0000
c[ccc	chr17:46148197-46148448(-)$1	251	146	151	15.0000
EEEEE	chr11:67379746-67380014(+)$1	268	35	40	15.0000
DDD::	chr1:11708503-11708792(-)$1	289	1	6	15.0000
dddnn	chr22:38062651-38062898(+)$1	247	215	220	15.0000
:FFFF	chr19:2321684-2321923(-)$1	239	145	150	15.0000
!bbdd	chr19:42751656-42751898(-)$1	242	55	60	15.0000
eeebb	chr8:98863773-98864027(+)$1	254	234	239	15.0000
FFFF:	chrX:152966092-152966405(-)$1	313	14	19	15.0000
iiiia	chr7:99564596-99564850(-)$1	254	49	54	15.0000

#DB
))(((	chr3:128338992-128339295(-)$1	1	63	68	15.0000
(((((	chr11:66052294-66052537(-)$1	1	40	45	15.0000
(((((	chr16:31105944-31106185(-)$1	1	47	52	15.0000
)))).	chr20:30156961-30157253(+)$1	1	85	90	15.0000
...))	chr14:21485033-21485292(-)$1	1	148	153	15.0000
)))).	chr19:896466-896728(-)$1	1	143	148	15.0000
(((((	chr20:2442304-2442543(-)$1	1	24	29	15.0000
.(((.	chr17:79974823-79975058(+)$1	1	4	9	15.0000
(((..	chr16:90002247-90002511(+)$1	1	3	8	15.0000
(((((	chr9:139942604-139942888(-)$1	1	190	195	15.0000
)))..	chr9:139942688-139943015(-)$1	1	317	322	15.0000
((.((	chr20:32441474-32441707(+)$1	1	24	29	15.0000
(((.(	chr7:44552209-44552477(-)$1	1	3	8	15.0000
).)))	chr3:47893522-47893764(-)$1	1	160	165	15.0000
.))).	chr11:63971656-63971901(+)$1	1	122	127	15.0000
)))))	chr7:150750847-150751157(-)$1	1	89	94	15.0000
(((.(	chr5:150408069-150408379(+)$1	1	57	62	15.0000
(((((	chr12:6601477-6601726(-)$1	1	128	133	15.0000
)))))	chr16:75263114-75263361(-)$1	1	125	130	15.0000
(((..	chr17:4848976-4849217(-)$1	1	107	112	15.0000
((((.	chr17:7417501-7417743(+)$1	1	22	27	15.0000
)))))	chr5:150404834-150405064(+)$1	1	206	211	15.0000
(((((	chr11:1774032-1774249(-)$1	1	5	10	15.0000
)))..	chr9:139756495-139756743(-)$1	1	88	93	15.0000
(.(((	chr3:129033765-129033976(-)$1	1	0	5	15.0000
)))))	chr7:149576323-149576593(+)$1	1	226	231	15.0000
(....	chr7:77166699-77166971(+)$1	1	130	135	15.0000
))).(	chr1:1375443-1375789(+)$1	1	62	67	15.0000
)))))	chr5:175957492-175957745(-)$1	1	220	225	15.0000
(((((	chr2:219128808-219129106(-)$1	1	29	34	15.0000
(((.(	chr19:5691498-5691754(+)$1	1	11	16	15.0000
(.(((	chr20:60962867-60963071(+)$1	1	86	91	15.0000
((((.	chr15:90328295-90328588(-)$1	1	79	84	15.0000
((((.	chr19:59067138-59067394(-)$1	1	3	8	15.0000
(((..	chr1:26144475-26144756(+)$1	1	31	36	15.0000
(((..	chr6:1624049-1624381(-)$1	1	125	130	15.0000
(((..	chr11:838545-838806(+)$1	1	56	61	15.0000
((.(.	chr11:62382904-62383234(-)$1	1	28	33	15.0000
(((((	chr16:97170-97570(-)$1	1	140	145	15.0000
)))((	chr1:153949880-153950139(-)$1	1	47	52	15.0000
((((.	chr19:49378976-49379318(+)$1	1	63	68	15.0000
(.(((	chr17:46148197-46148448(-)$1	1	146	151	15.0000
(((((	chr11:67379746-67380014(+)$1	1	35	40	15.0000
(((..	chr1:11708503-11708792(-)$1	1	1	6	15.0000
(((..	chr22:38062651-38062898(+)$1	1	215	220	15.0000
.((((	chr19:2321684-2321923(-)$1	1	145	150	15.0000
.((((	chr19:42751656-42751898(-)$1	1	55	60	15.0000
)))))	chr8:98863773-98864027(+)$1	1	234	239	15.0000
((((.	chrX:152966092-152966405(-)$1	1	14	19	15.0000
(((((	chr7:99564596-99564850(-)$1	1	49	54	15.0000

#PSSM
G : 0.98	g : 0.02	
G : 0.98	g : 0.02	
G : 0.98	g : 0.02	
C : 0.98	c : 0.02	
C : 0.98	c : 0.02	

#score	750.0000000000001
#seq	50
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_transcript_m3_run1.nuc.txt

#NT
GGGAG	chr19:1881804-1882101(-)$1	297	159	164	15.0000
GGGAG	chr1:32827795-32828062(-)$1	267	103	108	15.0000
GGGAG	chr19:59056282-59056528(+)$1	246	68	73	15.0000
GGGAG	chr16:85627601-85627866(+)$1	265	95	100	15.0000
GGGAG	chr21:39430685-39431012(-)$1	327	114	119	15.0000
GGGAG	chr7:98479270-98479506(+)$1	236	149	154	15.0000
gggag	chr19:1411641-1411894(+)$1	253	138	143	15.0000
GGGAG	chr7:98479312-98479517(+)$1	205	107	112	15.0000
GGGAG	chr19:18547567-18547863(-)$1	296	115	120	15.0000
GGGAG	chr7:150784259-150784513(+)$1	254	219	224	15.0000
gggag	chr17:80544327-80544616(+)$1	289	19	24	15.0000
GGGAG	chr12:133138871-133139130(+)$1	259	54	59	15.0000
GGGAG	chr9:139564445-139564705(+)$1	260	113	118	15.0000
GGGAG	chr19:3360742-3360990(+)$1	248	112	117	15.0000
GGGAG	chr1:28905184-28905419(-)$1	235	23	28	15.0000
GGGAG	chr19:4034957-4035228(+)$1	271	55	60	15.0000
GGGAG	chr19:4033476-4033760(+)$1	284	119	124	15.0000
gggag	chr19:1652298-1652554(-)$1	256	107	112	15.0000
GGGAG	chr13:92001546-92001776(+)$1	230	56	61	15.0000
GGGAG	chr9:96432962-96433337(+)$1	375	99	104	15.0000
GGGAG	chr9:139621154-139621374(-)$1	220	7	12	15.0000
GGGAG	chr20:47896780-47897019(+)$1	239	210	215	15.0000
GGGAG	chr2:97559128-97559380(-)$1	252	31	36	15.0000
GGGAG	chr12:123868699-123868964(+)$1	265	15	20	15.0000
gggag	chr19:2425550-2425840(-)$1	290	16	21	15.0000
GGGAG	chr20:31167152-31167400(-)$1	248	51	56	15.0000
GGGAG	chr22:20068779-20069080(+)$1	301	119	124	15.0000
GGGAG	chr2:97534561-97534814(-)$1	253	54	59	15.0000
gggag	chr2:203141053-203141335(+)$1	282	267	272	15.0000
GGGAG	chr22:50033471-50033730(-)$1	259	144	149	15.0000
GGGAG	chr16:88961209-88961445(-)$1	236	132	137	15.0000
GGGAG	chr16:89042633-89042879(-)$1	246	122	127	15.0000
GGGAG	chr19:4035078-4035305(+)$1	227	179	184	15.0000
GGGAG	chr15:89444583-89444832(-)$1	249	21	26	15.0000
GGGAG	chr14:21860272-21860501(-)$1	229	131	136	15.0000
GGGAG	chr20:1165127-1165384(-)$1	257	224	229	15.0000
GGGAG	chr21:9826125-9826351(+)$1	226	35	40	15.0000
GGGAG	chr2:203157680-203157938(+)$1	258	73	78	15.0000
GGGAG	chr19:2199971-2200235(+)$1	264	43	48	15.0000
gggag	chr21:46493860-46494122(+)$1	262	16	21	15.0000
gggag	chr12:124951181-124951531(-)$1	350	211	216	15.0000
GGGAg	chr19:13106878-13107145(+)$1	267	64	69	15.0000
gggag	chr19:1883808-1884089(-)$1	281	74	79	15.0000
GGGAG	chr19:1409593-1409835(+)$1	242	29	34	15.0000
GGGAG	chr4:78740041-78740317(-)$1	276	218	223	15.0000
GGGAG	chr20:1165406-1165674(-)$1	268	109	114	15.0000
GGGAG	chr19:1408275-1408532(+)$1	257	46	51	15.0000
GGGAG	chr9:139621122-139621353(-)$1	231	196	201	15.0000
GGGAG	chr22:19706729-19706968(+)$1	239	95	100	15.0000
GGGAG	chrX:152957782-152958002(+)$1	220	146	151	15.0000
gggag	chr1:988309-988573(+)$1	264	45	50	15.0000
GGGAG	chr3:186648354-186648607(+)$1	253	111	116	15.0000
GGGAG	chr9:136132174-136132417(-)$1	243	138	143	15.0000
GGGAG	chr19:2201529-2201806(+)$1	277	132	137	15.0000
GGGAG	chr19:4037216-4037476(+)$1	260	59	64	15.0000
GGGAG	chr16:85659300-85659564(+)$1	264	90	95	15.0000
GGGAG	chr12:123997699-123998012(-)$1	313	74	79	15.0000
GGGAG	chr7:98479329-98479537(+)$1	208	90	95	15.0000
GGGAG	chr1:109642790-109642995(+)$1	205	7	12	15.0000

#otherMatches

#Struct PSSM
5ffff	chr12:7076426-7076658(-)$1	232	89	94	15.0000
eeeee	chr19:1881804-1882101(-)$1	297	159	164	15.0000
eeeee	chr1:32827795-32828062(-)$1	267	103	108	15.0000
ccc55	chr19:59056282-59056528(+)$1	246	68	73	15.0000
a]ggg	chr16:85627601-85627866(+)$1	265	95	100	15.0000
ff]gg	chr21:39430685-39431012(-)$1	327	114	119	15.0000
ddd:d	chr7:98479270-98479506(+)$1	236	149	154	15.0000
pccc]	chr19:1411641-1411894(+)$1	253	138	143	15.0000
ddd:d	chr7:98479312-98479517(+)$1	205	107	112	15.0000
i''''	chr19:18547567-18547863(-)$1	296	115	120	15.0000
ooobb	chr7:150784259-150784513(+)$1	254	219	224	15.0000
CCC:d	chr17:80544327-80544616(+)$1	289	19	24	15.0000
gccce	chr12:133138871-133139130(+)$1	259	54	59	15.0000
[a[cc	chr9:139564445-139564705(+)$1	260	113	118	15.0000
JJJJJ	chr19:3360742-3360990(+)$1	248	112	117	15.0000
sssss	chr1:28905184-28905419(-)$1	235	23	28	15.0000
mmmdd	chr19:4034957-4035228(+)$1	271	55	60	15.0000
dBB}D	chr19:4033476-4033760(+)$1	284	119	124	15.0000
ee!!b	chr19:1652298-1652554(-)$1	256	107	112	15.0000
ffggg	chr13:92001546-92001776(+)$1	230	56	61	15.0000
cc]a]	chr9:96432962-96433337(+)$1	375	99	104	15.0000
{DDDD	chr9:139621154-139621374(-)$1	220	7	12	15.0000
GGGGG	chr20:47896780-47897019(+)$1	239	210	215	15.0000
IIIII	chr2:97559128-97559380(-)$1	252	31	36	15.0000
ee::F	chr12:123868699-123868964(+)$1	265	15	20	15.0000
GGGGG	chr19:2425550-2425840(-)$1	290	16	21	15.0000
[cccd	chr20:31167152-31167400(-)$1	248	51	56	15.0000
BBCCC	chr22:20068779-20069080(+)$1	301	119	124	15.0000
EEEEc	chr2:97534561-97534814(-)$1	253	54	59	15.0000
ffff:	chr2:203141053-203141335(+)$1	282	267	272	15.0000
GGYYF	chr22:50033471-50033730(-)$1	259	144	149	15.0000
bb]dd	chr16:88961209-88961445(-)$1	236	132	137	15.0000
hhhhh	chr16:89042633-89042879(-)$1	246	122	127	15.0000
e%%%%	chr19:4035078-4035305(+)$1	227	179	184	15.0000
EEEEe	chr15:89444583-89444832(-)$1	249	21	26	15.0000
dddpp	chr14:21860272-21860501(-)$1	229	131	136	15.0000
~~~~F	chr20:1165127-1165384(-)$1	257	224	229	15.0000
ggggg	chr21:9826125-9826351(+)$1	226	35	40	15.0000
:hhhh	chr2:203157680-203157938(+)$1	258	73	78	15.0000
hhhhh	chr19:2199971-2200235(+)$1	264	43	48	15.0000
ppppp	chr21:46493860-46494122(+)$1	262	16	21	15.0000
ffff[	chr12:124951181-124951531(-)$1	350	211	216	15.0000
FFFF{	chr19:13106878-13107145(+)$1	267	64	69	15.0000
::::f	chr19:1883808-1884089(-)$1	281	74	79	15.0000
EEEEE	chr19:1409593-1409835(+)$1	242	29	34	15.0000
ooooo	chr4:78740041-78740317(-)$1	276	218	223	15.0000
mmmmb	chr20:1165406-1165674(-)$1	268	109	114	15.0000
ccc]d	chr19:1408275-1408532(+)$1	257	46	51	15.0000
ggggg	chr9:139621122-139621353(-)$1	231	196	201	15.0000
GGGGG	chr22:19706729-19706968(+)$1	239	95	100	15.0000
ggggg	chrX:152957782-152958002(+)$1	220	146	151	15.0000
HHHHd	chr1:988309-988573(+)$1	264	45	50	15.0000
hhh:H	chr3:186648354-186648607(+)$1	253	111	116	15.0000
ddddd	chr9:136132174-136132417(-)$1	243	138	143	15.0000
HHHHH	chr19:2201529-2201806(+)$1	277	132	137	15.0000
fffff	chr19:4037216-4037476(+)$1	260	59	64	15.0000
dEEEE	chr16:85659300-85659564(+)$1	264	90	95	15.0000
bbb]b	chr12:123997699-123998012(-)$1	313	74	79	15.0000
ddd:d	chr7:98479329-98479537(+)$1	208	90	95	15.0000
JJJJJ	chr1:109642790-109642995(+)$1	205	7	12	15.0000

#DB
.))))	chr12:7076426-7076658(-)$1	1	89	94	15.0000
))))(	chr19:1881804-1882101(-)$1	1	159	164	15.0000
(((((	chr1:32827795-32828062(-)$1	1	103	108	15.0000
)))..	chr19:59056282-59056528(+)$1	1	68	73	15.0000
).)))	chr16:85627601-85627866(+)$1	1	95	100	15.0000
)).))	chr21:39430685-39431012(-)$1	1	114	119	15.0000
))).(	chr7:98479270-98479506(+)$1	1	149	154	15.0000
.))).	chr19:1411641-1411894(+)$1	1	138	143	15.0000
))).(	chr7:98479312-98479517(+)$1	1	107	112	15.0000
(....	chr19:18547567-18547863(-)$1	1	115	120	15.0000
...))	chr7:150784259-150784513(+)$1	1	219	224	15.0000
(((.(	chr17:80544327-80544616(+)$1	1	19	24	15.0000
(((((	chr12:133138871-133139130(+)$1	1	54	59	15.0000
.(.((	chr9:139564445-139564705(+)$1	1	113	118	15.0000
(((((	chr19:3360742-3360990(+)$1	1	112	117	15.0000
.....	chr1:28905184-28905419(-)$1	1	23	28	15.0000
...))	chr19:4034957-4035228(+)$1	1	55	60	15.0000
))).)	chr19:4033476-4033760(+)$1	1	119	124	15.0000
((..(	chr19:1652298-1652554(-)$1	1	107	112	15.0000
)))))	chr13:92001546-92001776(+)$1	1	56	61	15.0000
)).).	chr9:96432962-96433337(+)$1	1	99	104	15.0000
.((((	chr9:139621154-139621374(-)$1	1	7	12	15.0000
)))))	chr20:47896780-47897019(+)$1	1	210	215	15.0000
(((((	chr2:97559128-97559380(-)$1	1	31	36	15.0000
))..(	chr12:123868699-123868964(+)$1	1	15	20	15.0000
(((((	chr19:2425550-2425840(-)$1	1	16	21	15.0000
.((((	chr20:31167152-31167400(-)$1	1	51	56	15.0000
(((((	chr22:20068779-20069080(+)$1	1	119	124	15.0000
(((((	chr2:97534561-97534814(-)$1	1	54	59	15.0000
)))).	chr2:203141053-203141335(+)$1	1	267	272	15.0000
))..)	chr22:50033471-50033730(-)$1	1	144	149	15.0000
)).))	chr16:88961209-88961445(-)$1	1	132	137	15.0000
)))))	chr16:89042633-89042879(-)$1	1	122	127	15.0000
(....	chr19:4035078-4035305(+)$1	1	179	184	15.0000
(((((	chr15:89444583-89444832(-)$1	1	21	26	15.0000
(((..	chr14:21860272-21860501(-)$1	1	131	136	15.0000
....)	chr20:1165127-1165384(-)$1	1	224	229	15.0000
(((((	chr21:9826125-9826351(+)$1	1	35	40	15.0000
.((((	chr2:203157680-203157938(+)$1	1	73	78	15.0000
(((((	chr19:2199971-2200235(+)$1	1	43	48	15.0000
.....	chr21:46493860-46494122(+)$1	1	16	21	15.0000
((((.	chr12:124951181-124951531(-)$1	1	211	216	15.0000
((((.	chr19:13106878-13107145(+)$1	1	64	69	15.0000
....(	chr19:1883808-1884089(-)$1	1	74	79	15.0000
(((((	chr19:1409593-1409835(+)$1	1	29	34	15.0000
.....	chr4:78740041-78740317(-)$1	1	218	223	15.0000
....)	chr20:1165406-1165674(-)$1	1	109	114	15.0000
))).)	chr19:1408275-1408532(+)$1	1	46	51	15.0000
)))))	chr9:139621122-139621353(-)$1	1	196	201	15.0000
(((((	chr22:19706729-19706968(+)$1	1	95	100	15.0000
)))))	chrX:152957782-152958002(+)$1	1	146	151	15.0000
(((((	chr1:988309-988573(+)$1	1	45	50	15.0000
))).)	chr3:186648354-186648607(+)$1	1	111	116	15.0000
)))((	chr9:136132174-136132417(-)$1	1	138	143	15.0000
(((((	chr19:2201529-2201806(+)$1	1	132	137	15.0000
)))))	chr19:4037216-4037476(+)$1	1	59	64	15.0000
)((((	chr16:85659300-85659564(+)$1	1	90	95	15.0000
))).)	chr12:123997699-123998012(-)$1	1	74	79	15.0000
))).(	chr7:98479329-98479537(+)$1	1	90	95	15.0000
(((((	chr1:109642790-109642995(+)$1	1	7	12	15.0000

#PSSM
G : 0.85	g : 0.15	
G : 0.85	g : 0.15	
G : 0.85	g : 0.15	
A : 0.85	a : 0.15	
G : 0.83	g : 0.16	

#score	900.0000000000001
#seq	60
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_transcript_m1_run1.nuc.txt

#NT
GGGA	chr13:92001061-92001381(+)$1	320	7	11	11.9999
GGGA	chr22:19872031-19872317(-)$1	286	16	20	11.9999
GGGA	chr9:140072841-140073124(-)$1	283	254	258	11.9999
GGGA	chr19:18478059-18478349(+)$1	290	30	34	11.9999
GGGA	chr16:31197525-31197751(+)$1	226	47	51	11.9999
GGGA	chr2:97534548-97534863(-)$1	315	103	107	11.9999
GGGA	chr4:1225857-1226138(-)$1	281	75	79	11.9999
GGGA	chr20:1165603-1165891(-)$1	288	90	94	11.9999
GGGA	chr19:3098360-3098648(+)$1	288	94	98	11.9999
GGGA	chr10:3157572-3157938(+)$1	366	12	16	11.9999
GGGA	chr17:25410256-25410528(-)$1	272	94	98	11.9999
ggga	chr6:86352566-86352840(-)$1	274	32	36	11.9999
GGGA	chr16:31044904-31045244(+)$1	340	8	12	11.9999
GGGA	chr22:21797615-21797894(+)$1	279	89	93	11.9999
GGGA	chr22:25763476-25763773(-)$1	297	55	59	11.9999
GGGA	chr17:73891155-73891420(-)$1	265	47	51	11.9999
ggga	chr9:136149711-136149998(-)$1	287	49	53	11.9999
ggga	chr11:14520912-14521224(-)$1	312	24	28	11.9999
GGGA	chr2:97542961-97543220(-)$1	259	105	109	11.9999
GGGA	chr11:2965743-2965969(-)$1	226	168	172	11.9999
ggga	chr19:1645326-1645593(-)$1	267	35	39	11.9999
GGGA	chr11:64009473-64009771(+)$1	298	58	62	11.9999
GGGA	chr4:1236078-1236341(-)$1	263	25	29	11.9999
GGGA	chr11:65191157-65191403(+)$1	246	70	74	11.9999
GGGA	chr21:46372463-46372765(+)$1	302	8	12	11.9999
GGGA	chr3:195411137-195411482(+)$1	345	42	46	11.9999
GGGA	chr3:128215081-128215366(+)$1	285	45	49	11.9999
GGGA	chr22:50021637-50021923(-)$1	286	166	170	11.9999
GGGA	chr19:1649106-1649360(-)$1	254	11	15	11.9999
GGGA	chr12:125341888-125342200(-)$1	312	195	199	11.9999
GGGA	chr11:65191089-65191327(+)$1	238	138	142	11.9999
GGGA	chr1:54831218-54831574(-)$1	356	177	181	11.9999
GGGA	chr1:246151251-246151618(-)$1	367	100	104	11.9999
GGGA	chr17:26941724-26942069(-)$1	345	40	44	11.9999
GGGA	chr7:127670658-127670928(+)$1	270	66	70	11.9999
GGGA	chr22:50871232-50871555(+)$1	323	24	28	11.9999
GGGA	chr19:41196084-41196398(-)$1	314	45	49	11.9999
GGGA	chr19:18548152-18548387(-)$1	235	6	10	11.9999
GGGA	chr1:228276013-228276270(+)$1	257	23	27	11.9999
GGGA	chr17:7476378-7476677(+)$1	299	108	112	11.9999
GGGA	chr4:1238689-1238982(-)$1	293	18	22	11.9999
GGGA	chr19:2455784-2456056(-)$1	272	66	70	11.9999
GGGA	chr2:97558868-97559203(-)$1	335	82	86	11.9999
GGGA	chr19:34878771-34878995(+)$1	224	10	14	11.9999
GGGA	chr16:584530-584801(+)$1	271	68	72	11.9999
GGGA	chr22:49968099-49968370(-)$1	271	207	211	11.9999
GGGA	chr4:775150-775384(-)$1	234	77	81	11.9999
GGGA	chr9:139561867-139562142(+)$1	275	220	224	11.9999
GGGA	chr11:65191127-65191357(+)$1	230	100	104	11.9999
GGGA	chr16:1428064-1428377(-)$1	313	9	13	11.9999
GGGA	chr5:139038482-139038785(+)$1	303	62	66	11.9999
GGGA	chr21:45734134-45734504(+)$1	370	39	43	11.9999
GGGA	chr14:102228762-102229017(+)$1	255	169	173	11.9999
GGGA	chr16:89033877-89034126(-)$1	249	29	33	11.9999
gGGA	chr2:3318579-3318943(-)$1	364	142	146	11.9999
GGga	chr22:23539687-23539948(+)$1	261	98	102	11.9999
GGGA	chr16:89360718-89361012(-)$1	294	180	184	11.9999
GGGA	chr8:102217043-102217425(-)$1	382	149	153	11.9999
GGGA	chr22:19159846-19160141(+)$1	295	94	98	11.9999
GGGA	chr19:954230-954537(+)$1	307	3	7	11.9999
GGGA	chr16:89028444-89028716(-)$1	272	49	53	11.9999
GGGA	chr11:62284137-62284395(-)$1	258	24	28	11.9999
ggga	chr5:1807950-1808248(+)$1	298	0	4	11.9999
GGGA	chr16:88522127-88522403(+)$1	276	57	61	11.9999
GGGA	chr5:6723730-6723997(+)$1	267	14	18	11.9999
GGGA	chr4:774587-774810(-)$1	223	91	95	11.9999
GGGA	chrX:41194340-41194692(+)$1	352	0	4	11.9999
GGGA	chr16:88836324-88836589(-)$1	265	16	20	11.9999
GGGA	chr22:49942120-49942390(-)$1	270	126	130	11.9999
GGGA	chr22:50023674-50023902(-)$1	228	37	41	11.9999
GGGA	chr17:46659300-46659593(-)$1	293	15	19	11.9999
GGGA	chr22:49983689-49984037(-)$1	348	61	65	11.9999
GGGA	chr1:47690491-47690846(-)$1	355	55	59	11.9999
GGGA	chr1:31378975-31379284(-)$1	309	76	80	11.9999
GGGA	chr20:60724180-60724501(+)$1	321	122	126	11.9999
GGGA	chr1:2204926-2205234(+)$1	308	14	18	11.9999
GGGA	chr16:88535121-88535395(+)$1	274	72	76	11.9999
GGGA	chr22:19487036-19487297(+)$1	261	2	6	11.9999
GGGA	chr22:50020186-50020434(-)$1	248	230	234	11.9999
GGGA	chr2:97532354-97532632(-)$1	278	28	32	11.9999
GGGA	chr1:43440850-43441180(+)$1	330	19	23	11.9999
GGGA	chr20:60627123-60627404(-)$1	281	85	89	11.9999
GGGA	chr11:63898057-63898320(-)$1	263	92	96	11.9999
GGGA	chr9:140501642-140501919(+)$1	277	17	21	11.9999
GGGA	chr19:6258991-6259300(-)$1	309	63	67	11.9999
GGGA	chr16:89035923-89036155(-)$1	232	163	167	11.9999
GGGA	chr19:49606776-49607068(+)$1	292	110	114	11.9999
GGGA	chr5:34192627-34192896(-)$1	269	2	6	11.9999
GGGA	chr19:54971356-54971610(+)$1	254	57	61	11.9999
GGGA	chr10:126790224-126790477(-)$1	253	114	118	11.9999
GGGA	chr19:1168377-1168675(-)$1	298	66	70	11.9999
ggga	chr7:157033625-157033952(+)$1	327	51	55	11.9999

#otherMatches

#Struct PSSM
GGGG	chr20:60623424-60623678(-)$1	254	32	36	11.9999
GG{B	chr13:92001061-92001381(+)$1	320	7	11	11.9999
hhhh	chr22:19872031-19872317(-)$1	286	16	20	11.9999
DDDd	chr9:140072841-140073124(-)$1	283	254	258	11.9999
ufff	chr19:18478059-18478349(+)$1	290	30	34	11.9999
eeii	chr16:31197525-31197751(+)$1	226	47	51	11.9999
]bb]	chr2:97534548-97534863(-)$1	315	103	107	11.9999
DDDD	chr4:1225857-1226138(-)$1	281	75	79	11.9999
dddd	chr20:1165603-1165891(-)$1	288	90	94	11.9999
dddd	chr19:3098360-3098648(+)$1	288	94	98	11.9999
EEEE	chr10:3157572-3157938(+)$1	366	12	16	11.9999
ddd#	chr17:25410256-25410528(-)$1	272	94	98	11.9999
B{A{	chr6:86352566-86352840(-)$1	274	32	36	11.9999
BBKK	chr16:31044904-31045244(+)$1	340	8	12	11.9999
oooo	chr22:21797615-21797894(+)$1	279	89	93	11.9999
]a22	chr22:25763476-25763773(-)$1	297	55	59	11.9999
oooo	chr17:73891155-73891420(-)$1	265	47	51	11.9999
ELLL	chr9:136149711-136149998(-)$1	287	49	53	11.9999
b[a[	chr11:14520912-14521224(-)$1	312	24	28	11.9999
::::	chr2:97542961-97543220(-)$1	259	105	109	11.9999
dDDD	chr11:2965743-2965969(-)$1	226	168	172	11.9999
a[bb	chr19:1645326-1645593(-)$1	267	35	39	11.9999
dd22	chr11:64009473-64009771(+)$1	298	58	62	11.9999
dddd	chr4:1236078-1236341(-)$1	263	25	29	11.9999
dd::	chr11:65191157-65191403(+)$1	246	70	74	11.9999
dddd	chr21:46372463-46372765(+)$1	302	8	12	11.9999
ffff	chr3:195411137-195411482(+)$1	345	42	46	11.9999
::::	chr3:128215081-128215366(+)$1	285	45	49	11.9999
dddd	chr22:50021637-50021923(-)$1	286	166	170	11.9999
NAKK	chr19:1649106-1649360(-)$1	254	11	15	11.9999
IIII	chr12:125341888-125342200(-)$1	312	195	199	11.9999
dd::	chr11:65191089-65191327(+)$1	238	138	142	11.9999
CCC{	chr1:54831218-54831574(-)$1	356	177	181	11.9999
g[cc	chr1:246151251-246151618(-)$1	367	100	104	11.9999
fff:	chr17:26941724-26942069(-)$1	345	40	44	11.9999
EEEE	chr7:127670658-127670928(+)$1	270	66	70	11.9999
BB{F	chr22:50871232-50871555(+)$1	323	24	28	11.9999
ffff	chr19:41196084-41196398(-)$1	314	45	49	11.9999
gggg	chr19:18548152-18548387(-)$1	235	6	10	11.9999
fffl	chr1:228276013-228276270(+)$1	257	23	27	11.9999
qqqq	chr17:7476378-7476677(+)$1	299	108	112	11.9999
ffff	chr4:1238689-1238982(-)$1	293	18	22	11.9999
]a]f	chr19:2455784-2456056(-)$1	272	66	70	11.9999
cc33	chr2:97558868-97559203(-)$1	335	82	86	11.9999
nnnn	chr19:34878771-34878995(+)$1	224	10	14	11.9999
eeee	chr16:584530-584801(+)$1	271	68	72	11.9999
d22b	chr22:49968099-49968370(-)$1	271	207	211	11.9999
ccc"	chr4:775150-775384(-)$1	234	77	81	11.9999
eeee	chr9:139561867-139562142(+)$1	275	220	224	11.9999
dd::	chr11:65191127-65191357(+)$1	230	100	104	11.9999
[a[b	chr16:1428064-1428377(-)$1	313	9	13	11.9999
dd22	chr5:139038482-139038785(+)$1	303	62	66	11.9999
bb[e	chr21:45734134-45734504(+)$1	370	39	43	11.9999
ff::	chr14:102228762-102229017(+)$1	255	169	173	11.9999
GGGG	chr16:89033877-89034126(-)$1	249	29	33	11.9999
FAKK	chr2:3318579-3318943(-)$1	364	142	146	11.9999
d:::	chr22:23539687-23539948(+)$1	261	98	102	11.9999
dddd	chr16:89360718-89361012(-)$1	294	180	184	11.9999
GGGG	chr8:102217043-102217425(-)$1	382	149	153	11.9999
::II	chr22:19159846-19160141(+)$1	295	94	98	11.9999
ffff	chr19:954230-954537(+)$1	307	3	7	11.9999
mmmm	chr16:89028444-89028716(-)$1	272	49	53	11.9999
FFFF	chr11:62284137-62284395(-)$1	258	24	28	11.9999
::::	chr5:1807950-1808248(+)$1	298	0	4	11.9999
hhhh	chr16:88522127-88522403(+)$1	276	57	61	11.9999
ccpp	chr5:6723730-6723997(+)$1	267	14	18	11.9999
]bb]	chr4:774587-774810(-)$1	223	91	95	11.9999
:EEE	chrX:41194340-41194692(+)$1	352	0	4	11.9999
JJJJ	chr16:88836324-88836589(-)$1	265	16	20	11.9999
FFAZ	chr22:49942120-49942390(-)$1	270	126	130	11.9999
nnnn	chr22:50023674-50023902(-)$1	228	37	41	11.9999
EACC	chr17:46659300-46659593(-)$1	293	15	19	11.9999
tttt	chr22:49983689-49984037(-)$1	348	61	65	11.9999
DDLL	chr1:47690491-47690846(-)$1	355	55	59	11.9999
FFFF	chr1:31378975-31379284(-)$1	309	76	80	11.9999
lllf	chr20:60724180-60724501(+)$1	321	122	126	11.9999
bb[e	chr1:2204926-2205234(+)$1	308	14	18	11.9999
qqqq	chr16:88535121-88535395(+)$1	274	72	76	11.9999
JJJJ	chr22:19487036-19487297(+)$1	261	2	6	11.9999
dddd	chr22:50020186-50020434(-)$1	248	230	234	11.9999
[ccc	chr2:97532354-97532632(-)$1	278	28	32	11.9999
HHHH	chr1:43440850-43441180(+)$1	330	19	23	11.9999
FFF{	chr20:60627123-60627404(-)$1	281	85	89	11.9999
FFFF	chr11:63898057-63898320(-)$1	263	92	96	11.9999
DDD{	chr9:140501642-140501919(+)$1	277	17	21	11.9999
nndd	chr19:6258991-6259300(-)$1	309	63	67	11.9999
[bb!	chr16:89035923-89036155(-)$1	232	163	167	11.9999
eeGG	chr19:49606776-49607068(+)$1	292	110	114	11.9999
[a##	chr5:34192627-34192896(-)$1	269	2	6	11.9999
EEE{	chr19:54971356-54971610(+)$1	254	57	61	11.9999
cccn	chr10:126790224-126790477(-)$1	253	114	118	11.9999
eeee	chr19:1168377-1168675(-)$1	298	66	70	11.9999
[bb$	chr7:157033625-157033952(+)$1	327	51	55	11.9999

#DB
((((	chr20:60623424-60623678(-)$1	1	32	36	11.9999
((.(	chr13:92001061-92001381(+)$1	1	7	11	11.9999
))))	chr22:19872031-19872317(-)$1	1	16	20	11.9999
)))(	chr9:140072841-140073124(-)$1	1	254	258	11.9999
.)))	chr19:18478059-18478349(+)$1	1	30	34	11.9999
))((	chr16:31197525-31197751(+)$1	1	47	51	11.9999
.)).	chr2:97534548-97534863(-)$1	1	103	107	11.9999
((((	chr4:1225857-1226138(-)$1	1	75	79	11.9999
))))	chr20:1165603-1165891(-)$1	1	90	94	11.9999
))))	chr19:3098360-3098648(+)$1	1	94	98	11.9999
((((	chr10:3157572-3157938(+)$1	1	12	16	11.9999
(((.	chr17:25410256-25410528(-)$1	1	94	98	11.9999
(.(.	chr6:86352566-86352840(-)$1	1	32	36	11.9999
((..	chr16:31044904-31045244(+)$1	1	8	12	11.9999
....	chr22:21797615-21797894(+)$1	1	89	93	11.9999
.)..	chr22:25763476-25763773(-)$1	1	55	59	11.9999
....	chr17:73891155-73891420(-)$1	1	47	51	11.9999
(...	chr9:136149711-136149998(-)$1	1	49	53	11.9999
(.(.	chr11:14520912-14521224(-)$1	1	24	28	11.9999
....	chr2:97542961-97543220(-)$1	1	105	109	11.9999
))))	chr11:2965743-2965969(-)$1	1	168	172	11.9999
(.((	chr19:1645326-1645593(-)$1	1	35	39	11.9999
))..	chr11:64009473-64009771(+)$1	1	58	62	11.9999
))))	chr4:1236078-1236341(-)$1	1	25	29	11.9999
))..	chr11:65191157-65191403(+)$1	1	70	74	11.9999
))))	chr21:46372463-46372765(+)$1	1	8	12	11.9999
))))	chr3:195411137-195411482(+)$1	1	42	46	11.9999
....	chr3:128215081-128215366(+)$1	1	45	49	11.9999
))))	chr22:50021637-50021923(-)$1	1	166	170	11.9999
.(..	chr19:1649106-1649360(-)$1	1	11	15	11.9999
))))	chr12:125341888-125342200(-)$1	1	195	199	11.9999
))..	chr11:65191089-65191327(+)$1	1	138	142	11.9999
(((.	chr1:54831218-54831574(-)$1	1	177	181	11.9999
(.((	chr1:246151251-246151618(-)$1	1	100	104	11.9999
))).	chr17:26941724-26942069(-)$1	1	40	44	11.9999
((((	chr7:127670658-127670928(+)$1	1	66	70	11.9999
((.(	chr22:50871232-50871555(+)$1	1	24	28	11.9999
))))	chr19:41196084-41196398(-)$1	1	45	49	11.9999
((((	chr19:18548152-18548387(-)$1	1	6	10	11.9999
(((.	chr1:228276013-228276270(+)$1	1	23	27	11.9999
....	chr17:7476378-7476677(+)$1	1	108	112	11.9999
))))	chr4:1238689-1238982(-)$1	1	18	22	11.9999
.).)	chr19:2455784-2456056(-)$1	1	66	70	11.9999
))..	chr2:97558868-97559203(-)$1	1	82	86	11.9999
....	chr19:34878771-34878995(+)$1	1	10	14	11.9999
((((	chr16:584530-584801(+)$1	1	68	72	11.9999
)..)	chr22:49968099-49968370(-)$1	1	207	211	11.9999
(((.	chr4:775150-775384(-)$1	1	77	81	11.9999
))))	chr9:139561867-139562142(+)$1	1	220	224	11.9999
))..	chr11:65191127-65191357(+)$1	1	100	104	11.9999
.(.(	chr16:1428064-1428377(-)$1	1	9	13	11.9999
))..	chr5:139038482-139038785(+)$1	1	62	66	11.9999
((.(	chr21:45734134-45734504(+)$1	1	39	43	11.9999
))..	chr14:102228762-102229017(+)$1	1	169	173	11.9999
((((	chr16:89033877-89034126(-)$1	1	29	33	11.9999
((..	chr2:3318579-3318943(-)$1	1	142	146	11.9999
)...	chr22:23539687-23539948(+)$1	1	98	102	11.9999
)(((	chr16:89360718-89361012(-)$1	1	180	184	11.9999
((((	chr8:102217043-102217425(-)$1	1	149	153	11.9999
..((	chr22:19159846-19160141(+)$1	1	94	98	11.9999
((((	chr19:954230-954537(+)$1	1	3	7	11.9999
....	chr16:89028444-89028716(-)$1	1	49	53	11.9999
((((	chr11:62284137-62284395(-)$1	1	24	28	11.9999
....	chr5:1807950-1808248(+)$1	1	0	4	11.9999
))))	chr16:88522127-88522403(+)$1	1	57	61	11.9999
((..	chr5:6723730-6723997(+)$1	1	14	18	11.9999
.)).	chr4:774587-774810(-)$1	1	91	95	11.9999
.(((	chrX:41194340-41194692(+)$1	1	0	4	11.9999
((((	chr16:88836324-88836589(-)$1	1	16	20	11.9999
))).	chr22:49942120-49942390(-)$1	1	126	130	11.9999
....	chr22:50023674-50023902(-)$1	1	37	41	11.9999
((((	chr17:46659300-46659593(-)$1	1	15	19	11.9999
....	chr22:49983689-49984037(-)$1	1	61	65	11.9999
((..	chr1:47690491-47690846(-)$1	1	55	59	11.9999
((((	chr1:31378975-31379284(-)$1	1	76	80	11.9999
...)	chr20:60724180-60724501(+)$1	1	122	126	11.9999
((.(	chr1:2204926-2205234(+)$1	1	14	18	11.9999
....	chr16:88535121-88535395(+)$1	1	72	76	11.9999
((((	chr22:19487036-19487297(+)$1	1	2	6	11.9999
))))	chr22:50020186-50020434(-)$1	1	230	234	11.9999
.(((	chr2:97532354-97532632(-)$1	1	28	32	11.9999
((((	chr1:43440850-43441180(+)$1	1	19	23	11.9999
(((.	chr20:60627123-60627404(-)$1	1	85	89	11.9999
((((	chr11:63898057-63898320(-)$1	1	92	96	11.9999
(((.	chr9:140501642-140501919(+)$1	1	17	21	11.9999
..))	chr19:6258991-6259300(-)$1	1	63	67	11.9999
.((.	chr16:89035923-89036155(-)$1	1	163	167	11.9999
))))	chr19:49606776-49607068(+)$1	1	110	114	11.9999
.(..	chr5:34192627-34192896(-)$1	1	2	6	11.9999
(((.	chr19:54971356-54971610(+)$1	1	57	61	11.9999
(((.	chr10:126790224-126790477(-)$1	1	114	118	11.9999
))))	chr19:1168377-1168675(-)$1	1	66	70	11.9999
.((.	chr7:157033625-157033952(+)$1	1	51	55	11.9999

#PSSM
G : 0.92	g : 0.07	
G : 0.93	g : 0.06	
G : 0.92	g : 0.07	
A : 0.92	a : 0.07	

#score	1115.9999999999998
#seq	93
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_transcript_m3_run1.nuc.txt

#NT
UUG	chr5:137896695-137896900(-)$1	205	24	27	8.9999
UUG	chr15:25332746-25332976(+)$1	230	39	42	8.9999
UUG	chr2:216243911-216244140(-)$1	229	28	31	8.9999
UUG	chr8:56986328-56986560(-)$1	232	79	82	8.9999
UUG	chr8:134250822-134251065(-)$1	243	65	68	8.9999
UUG	chr11:75115364-75115621(+)$1	257	2	5	8.9999
UUG	chr19:49993123-49993366(+)$1	243	133	136	8.9999
UUG	chr15:25230146-25230397(+)$1	251	67	70	8.9999
UUG	chr11:93454846-93455133(+)$1	287	66	69	8.9999
UUG	chr17:74557630-74557859(+)$1	229	9	12	8.9999
UUG	chrX:132887833-132888119(-)$1	286	3	6	8.9999
UUG	chr13:27829103-27829314(+)$1	211	6	9	8.9999
UUG	chr11:93454578-93454891(+)$1	313	40	43	8.9999
UUG	chr9:33952674-33952942(-)$1	268	199	202	8.9999
UUG	chr16:70571807-70572093(+)$1	286	60	63	8.9999
UUG	chr15:25346622-25346913(+)$1	291	221	224	8.9999
UUG	chr18:47017987-47018192(-)$1	205	0	3	8.9999
UUG	chr1:173833444-173833646(-)$1	202	37	40	8.9999
UUG	chr17:74554774-74555015(+)$1	241	1	4	8.9999
UUG	chr1:173833902-173834104(-)$1	202	50	53	8.9999
UUG	chr6:31504061-31504278(-)$1	217	22	25	8.9999
UUG	chr5:137896633-137896845(-)$1	212	13	16	8.9999
UUG	chr11:93466358-93466566(-)$1	208	6	9	8.9999
UUG	chr1:230839951-230840164(-)$1	213	196	199	8.9999
UUG	chr17:27047482-27047701(+)$1	219	26	29	8.9999
uug	chr2:234184277-234184517(+)$1	240	5	8	8.9999
UUG	chr11:17096143-17096360(-)$1	217	44	47	8.9999
UUG	chr1:173833446-173833679(-)$1	233	70	73	8.9999
UUG	chr16:2204940-2205169(-)$1	229	43	46	8.9999
UUG	chr16:33965408-33965636(+)$1	228	11	14	8.9999
UUG	chr17:7480027-7480293(+)$1	266	18	21	8.9999
UUG	chr2:216263926-216264160(-)$1	234	15	18	8.9999
UUG	chr11:17097304-17097516(-)$1	212	77	80	8.9999
UUG	chr17:2233476-2233762(-)$1	286	45	48	8.9999
UUG	chr17:7480119-7480347(+)$1	228	95	98	8.9999
UUG	chr2:216247990-216248261(-)$1	271	4	7	8.9999
UUG	chr19:50000919-50001134(+)$1	215	38	41	8.9999
UUG	chr20:47897127-47897366(+)$1	239	59	62	8.9999
UUG	chr17:74557662-74557880(+)$1	218	11	14	8.9999
UUG	chr1:173835944-173836177(-)$1	233	56	59	8.9999
UUG	chr1:76253475-76253752(+)$1	277	23	26	8.9999
UUG	chr18:47017992-47018199(-)$1	207	7	10	8.9999
UUG	chr1:173836717-173836977(-)$1	260	16	19	8.9999
UUG	chr14:21860306-21860513(-)$1	207	8	11	8.9999
UUG	chr1:76252659-76252887(+)$1	228	16	19	8.9999
UUG	chr1:230839973-230840183(-)$1	210	10	13	8.9999
UUG	chr6:31903634-31903888(+)$1	254	20	23	8.9999
UUG	chr17:74554815-74555051(+)$1	236	22	25	8.9999
UUG	chr1:173835921-173836144(-)$1	223	23	26	8.9999
UUG	chr1:12020656-12020922(+)$1	266	173	176	8.9999
UUG	chr1:8926451-8926661(-)$1	210	17	20	8.9999
UUG	chr11:68201145-68201387(+)$1	242	221	224	8.9999
UUG	chr17:1675097-1675358(+)$1	261	22	25	8.9999
UUG	chr5:138614428-138614641(+)$1	213	49	52	8.9999
UUG	chr11:9450211-9450474(+)$1	263	2	5	8.9999
UUG	chr18:47017966-47018187(-)$1	221	69	72	8.9999
UUG	chr20:2637487-2637751(+)$1	264	59	62	8.9999
UUG	chr20:47895418-47895647(+)$1	229	55	58	8.9999
UUG	chr3:186336224-186336432(+)$1	208	54	57	8.9999
UUG	chr2:203142737-203142983(+)$1	246	9	12	8.9999
UUG	chr3:186336232-186336448(+)$1	216	46	49	8.9999
UUG	chr5:137896645-137896858(-)$1	213	12	15	8.9999
UUG	chr17:2232320-2232605(-)$1	285	2	5	8.9999
UUG	chr15:25227040-25227245(+)$1	205	82	85	8.9999
UUG	chr20:47896797-47897036(+)$1	239	106	109	8.9999
UUG	chr20:2637485-2637687(+)$1	202	61	64	8.9999
UUG	chr17:16344436-16344640(+)$1	204	15	18	8.9999
UUG	chr5:137896660-137896868(-)$1	208	22	25	8.9999
UUG	chr8:27457234-27457491(-)$1	257	39	42	8.9999
UUG	chr9:136216150-136216392(+)$1	242	44	47	8.9999
UUG	chr11:62621299-62621532(-)$1	233	3	6	8.9999
UUG	chr19:6684300-6684518(-)$1	218	104	107	8.9999
UUG	chr5:137896668-137896887(-)$1	219	11	14	8.9999
UUG	chr2:203141060-203141333(+)$1	273	76	79	8.9999
UUG	chr1:173833479-173833683(-)$1	204	74	77	8.9999
UUG	chr14:21860234-21860465(-)$1	231	50	53	8.9999
UUG	chr10:73587755-73587992(-)$1	237	36	39	8.9999
UUG	chr14:21865369-21865613(-)$1	244	38	41	8.9999
UUG	chr17:26697115-26697386(-)$1	271	11	14	8.9999
UUG	chrX:132888084-132888297(-)$1	213	53	56	8.9999
UUG	chr5:40832671-40832936(-)$1	265	29	32	8.9999
UUG	chr17:74557098-74557322(+)$1	224	2	5	8.9999
UUG	chr11:75111422-75111676(+)$1	254	42	45	8.9999
UUG	chr9:125642482-125642685(-)$1	203	184	187	8.9999
UUG	chr9:136216198-136216425(+)$1	227	4	7	8.9999
UUG	chr17:27050346-27050595(+)$1	249	27	30	8.9999
UUG	chr1:173833904-173834141(-)$1	237	87	90	8.9999
UUG	chr3:186335034-186335239(+)$1	205	100	103	8.9999
UUG	chr1:955514-955786(+)$1	272	87	90	8.9999
UUG	chr11:122930024-122930231(-)$1	207	36	39	8.9999
UUG	chr2:216246836-216247078(-)$1	242	2	5	8.9999
UUG	chr2:232321093-232321334(-)$1	241	21	24	8.9999
UUG	chr16:2204969-2205206(-)$1	237	6	9	8.9999
UUG	chr3:186336248-186336468(+)$1	220	30	33	8.9999
UUG	chr2:29136428-29136671(+)$1	243	29	32	8.9999

#otherMatches

#Struct PSSM
iii	chr12:57038772-57038985(-)$1	213	9	12	8.9999
qbb	chr5:137896695-137896900(-)$1	205	24	27	8.9999
2cc	chr15:25332746-25332976(+)$1	230	39	42	8.9999
HHH	chr2:216243911-216244140(-)$1	229	28	31	8.9999
ddd	chr8:56986328-56986560(-)$1	232	79	82	8.9999
==l	chr8:134250822-134251065(-)$1	243	65	68	8.9999
ggg	chr11:75115364-75115621(+)$1	257	2	5	8.9999
uee	chr19:49993123-49993366(+)$1	243	133	136	8.9999
:::	chr15:25230146-25230397(+)$1	251	67	70	8.9999
JJJ	chr11:93454846-93455133(+)$1	287	66	69	8.9999
NNC	chr17:74557630-74557859(+)$1	229	9	12	8.9999
GGG	chrX:132887833-132888119(-)$1	286	3	6	8.9999
d[b	chr13:27829103-27829314(+)$1	211	6	9	8.9999
FFF	chr11:93454578-93454891(+)$1	313	40	43	8.9999
ddd	chr9:33952674-33952942(-)$1	268	199	202	8.9999
NNN	chr16:70571807-70572093(+)$1	286	60	63	8.9999
ggg	chr15:25346622-25346913(+)$1	291	221	224	8.9999
::E	chr18:47017987-47018192(-)$1	205	0	3	8.9999
eee	chr1:173833444-173833646(-)$1	202	37	40	8.9999
:::	chr17:74554774-74555015(+)$1	241	1	4	8.9999
GGG	chr1:173833902-173834104(-)$1	202	50	53	8.9999
fff	chr6:31504061-31504278(-)$1	217	22	25	8.9999
EE{	chr5:137896633-137896845(-)$1	212	13	16	8.9999
D{A	chr11:93466358-93466566(-)$1	208	6	9	8.9999
7ff	chr1:230839951-230840164(-)$1	213	196	199	8.9999
[bb	chr17:27047482-27047701(+)$1	219	26	29	8.9999
:ee	chr2:234184277-234184517(+)$1	240	5	8	8.9999
JJJ	chr11:17096143-17096360(-)$1	217	44	47	8.9999
eee	chr1:173833446-173833679(-)$1	233	70	73	8.9999
f[c	chr16:2204940-2205169(-)$1	229	43	46	8.9999
ccc	chr16:33965408-33965636(+)$1	228	11	14	8.9999
::D	chr17:7480027-7480293(+)$1	266	18	21	8.9999
:::	chr2:216263926-216264160(-)$1	234	15	18	8.9999
iii	chr11:17097304-17097516(-)$1	212	77	80	8.9999
fff	chr17:2233476-2233762(-)$1	286	45	48	8.9999
=77	chr17:7480119-7480347(+)$1	228	95	98	8.9999
:::	chr2:216247990-216248261(-)$1	271	4	7	8.9999
ddd	chr19:50000919-50001134(+)$1	215	38	41	8.9999
qqq	chr20:47897127-47897366(+)$1	239	59	62	8.9999
:ff	chr17:74557662-74557880(+)$1	218	11	14	8.9999
VVV	chr1:173835944-173836177(-)$1	233	56	59	8.9999
ddq	chr1:76253475-76253752(+)$1	277	23	26	8.9999
FFF	chr18:47017992-47018199(-)$1	207	7	10	8.9999
b[d	chr1:173836717-173836977(-)$1	260	16	19	8.9999
F{F	chr14:21860306-21860513(-)$1	207	8	11	8.9999
FFF	chr1:76252659-76252887(+)$1	228	16	19	8.9999
FFF	chr1:230839973-230840183(-)$1	210	10	13	8.9999
EEd	chr6:31903634-31903888(+)$1	254	20	23	8.9999
iii	chr17:74554815-74555051(+)$1	236	22	25	8.9999
GGG	chr1:173835921-173836144(-)$1	223	23	26	8.9999
EEE	chr1:12020656-12020922(+)$1	266	173	176	8.9999
]dd	chr1:8926451-8926661(-)$1	210	17	20	8.9999
Ehh	chr11:68201145-68201387(+)$1	242	221	224	8.9999
eee	chr17:1675097-1675358(+)$1	261	22	25	8.9999
i[b	chr5:138614428-138614641(+)$1	213	49	52	8.9999
:::	chr11:9450211-9450474(+)$1	263	2	5	8.9999
eee	chr18:47017966-47018187(-)$1	221	69	72	8.9999
ee!	chr20:2637487-2637751(+)$1	264	59	62	8.9999
ccd	chr20:47895418-47895647(+)$1	229	55	58	8.9999
:::	chr3:186336224-186336432(+)$1	208	54	57	8.9999
eee	chr2:203142737-203142983(+)$1	246	9	12	8.9999
qqq	chr3:186336232-186336448(+)$1	216	46	49	8.9999
CC{	chr5:137896645-137896858(-)$1	213	12	15	8.9999
::c	chr17:2232320-2232605(-)$1	285	2	5	8.9999
ncc	chr15:25227040-25227245(+)$1	205	82	85	8.9999
hhh	chr20:47896797-47897036(+)$1	239	106	109	8.9999
ee!	chr20:2637485-2637687(+)$1	202	61	64	8.9999
nnn	chr17:16344436-16344640(+)$1	204	15	18	8.9999
CC{	chr5:137896660-137896868(-)$1	208	22	25	8.9999
]ee	chr8:27457234-27457491(-)$1	257	39	42	8.9999
::D	chr9:136216150-136216392(+)$1	242	44	47	8.9999
nnn	chr11:62621299-62621532(-)$1	233	3	6	8.9999
eee	chr19:6684300-6684518(-)$1	218	104	107	8.9999
::c	chr5:137896668-137896887(-)$1	219	11	14	8.9999
EEL	chr2:203141060-203141333(+)$1	273	76	79	8.9999
eee	chr1:173833479-173833683(-)$1	204	74	77	8.9999
qqq	chr14:21860234-21860465(-)$1	231	50	53	8.9999
555	chr10:73587755-73587992(-)$1	237	36	39	8.9999
KKC	chr14:21865369-21865613(-)$1	244	38	41	8.9999
!!c	chr17:26697115-26697386(-)$1	271	11	14	8.9999
ddd	chrX:132888084-132888297(-)$1	213	53	56	8.9999
ddd	chr5:40832671-40832936(-)$1	265	29	32	8.9999
DDK	chr17:74557098-74557322(+)$1	224	2	5	8.9999
cc[	chr11:75111422-75111676(+)$1	254	42	45	8.9999
hhf	chr9:125642482-125642685(-)$1	203	184	187	8.9999
GGG	chr9:136216198-136216425(+)$1	227	4	7	8.9999
DDK	chr17:27050346-27050595(+)$1	249	27	30	8.9999
sss	chr1:173833904-173834141(-)$1	237	87	90	8.9999
===	chr3:186335034-186335239(+)$1	205	100	103	8.9999
tt=	chr1:955514-955786(+)$1	272	87	90	8.9999
JJJ	chr11:122930024-122930231(-)$1	207	36	39	8.9999
::b	chr2:216246836-216247078(-)$1	242	2	5	8.9999
{EE	chr2:232321093-232321334(-)$1	241	21	24	8.9999
GG:	chr16:2204969-2205206(-)$1	237	6	9	8.9999
qqq	chr3:186336248-186336468(+)$1	220	30	33	8.9999
ddq	chr2:29136428-29136671(+)$1	243	29	32	8.9999

#DB
(((	chr12:57038772-57038985(-)$1	1	9	12	8.9999
.))	chr5:137896695-137896900(-)$1	1	24	27	8.9999
.))	chr15:25332746-25332976(+)$1	1	39	42	8.9999
(((	chr2:216243911-216244140(-)$1	1	28	31	8.9999
)))	chr8:56986328-56986560(-)$1	1	79	82	8.9999
((.	chr8:134250822-134251065(-)$1	1	65	68	8.9999
(((	chr11:75115364-75115621(+)$1	1	2	5	8.9999
.))	chr19:49993123-49993366(+)$1	1	133	136	8.9999
...	chr15:25230146-25230397(+)$1	1	67	70	8.9999
(((	chr11:93454846-93455133(+)$1	1	66	69	8.9999
..(	chr17:74557630-74557859(+)$1	1	9	12	8.9999
(((	chrX:132887833-132888119(-)$1	1	3	6	8.9999
(.(	chr13:27829103-27829314(+)$1	1	6	9	8.9999
(((	chr11:93454578-93454891(+)$1	1	40	43	8.9999
)))	chr9:33952674-33952942(-)$1	1	199	202	8.9999
...	chr16:70571807-70572093(+)$1	1	60	63	8.9999
)))	chr15:25346622-25346913(+)$1	1	221	224	8.9999
..(	chr18:47017987-47018192(-)$1	1	0	3	8.9999
(((	chr1:173833444-173833646(-)$1	1	37	40	8.9999
...	chr17:74554774-74555015(+)$1	1	1	4	8.9999
(((	chr1:173833902-173834104(-)$1	1	50	53	8.9999
(((	chr6:31504061-31504278(-)$1	1	22	25	8.9999
((.	chr5:137896633-137896845(-)$1	1	13	16	8.9999
(.(	chr11:93466358-93466566(-)$1	1	6	9	8.9999
.))	chr1:230839951-230840164(-)$1	1	196	199	8.9999
.((	chr17:27047482-27047701(+)$1	1	26	29	8.9999
.((	chr2:234184277-234184517(+)$1	1	5	8	8.9999
(((	chr11:17096143-17096360(-)$1	1	44	47	8.9999
(((	chr1:173833446-173833679(-)$1	1	70	73	8.9999
(.(	chr16:2204940-2205169(-)$1	1	43	46	8.9999
(((	chr16:33965408-33965636(+)$1	1	11	14	8.9999
..(	chr17:7480027-7480293(+)$1	1	18	21	8.9999
...	chr2:216263926-216264160(-)$1	1	15	18	8.9999
)))	chr11:17097304-17097516(-)$1	1	77	80	8.9999
(((	chr17:2233476-2233762(-)$1	1	45	48	8.9999
)..	chr17:7480119-7480347(+)$1	1	95	98	8.9999
...	chr2:216247990-216248261(-)$1	1	4	7	8.9999
(((	chr19:50000919-50001134(+)$1	1	38	41	8.9999
...	chr20:47897127-47897366(+)$1	1	59	62	8.9999
.((	chr17:74557662-74557880(+)$1	1	11	14	8.9999
...	chr1:173835944-173836177(-)$1	1	56	59	8.9999
((.	chr1:76253475-76253752(+)$1	1	23	26	8.9999
(((	chr18:47017992-47018199(-)$1	1	7	10	8.9999
(.(	chr1:173836717-173836977(-)$1	1	16	19	8.9999
(.(	chr14:21860306-21860513(-)$1	1	8	11	8.9999
(((	chr1:76252659-76252887(+)$1	1	16	19	8.9999
(((	chr1:230839973-230840183(-)$1	1	10	13	8.9999
(((	chr6:31903634-31903888(+)$1	1	20	23	8.9999
(((	chr17:74554815-74555051(+)$1	1	22	25	8.9999
(((	chr1:173835921-173836144(-)$1	1	23	26	8.9999
)))	chr1:12020656-12020922(+)$1	1	173	176	8.9999
.))	chr1:8926451-8926661(-)$1	1	17	20	8.9999
)((	chr11:68201145-68201387(+)$1	1	221	224	8.9999
)))	chr17:1675097-1675358(+)$1	1	22	25	8.9999
(.(	chr5:138614428-138614641(+)$1	1	49	52	8.9999
...	chr11:9450211-9450474(+)$1	1	2	5	8.9999
))(	chr18:47017966-47018187(-)$1	1	69	72	8.9999
((.	chr20:2637487-2637751(+)$1	1	59	62	8.9999
)))	chr20:47895418-47895647(+)$1	1	55	58	8.9999
...	chr3:186336224-186336432(+)$1	1	54	57	8.9999
(((	chr2:203142737-203142983(+)$1	1	9	12	8.9999
...	chr3:186336232-186336448(+)$1	1	46	49	8.9999
((.	chr5:137896645-137896858(-)$1	1	12	15	8.9999
..(	chr17:2232320-2232605(-)$1	1	2	5	8.9999
.))	chr15:25227040-25227245(+)$1	1	82	85	8.9999
)))	chr20:47896797-47897036(+)$1	1	106	109	8.9999
((.	chr20:2637485-2637687(+)$1	1	61	64	8.9999
...	chr17:16344436-16344640(+)$1	1	15	18	8.9999
((.	chr5:137896660-137896868(-)$1	1	22	25	8.9999
.))	chr8:27457234-27457491(-)$1	1	39	42	8.9999
..(	chr9:136216150-136216392(+)$1	1	44	47	8.9999
...	chr11:62621299-62621532(-)$1	1	3	6	8.9999
(((	chr19:6684300-6684518(-)$1	1	104	107	8.9999
..(	chr5:137896668-137896887(-)$1	1	11	14	8.9999
((.	chr2:203141060-203141333(+)$1	1	76	79	8.9999
(((	chr1:173833479-173833683(-)$1	1	74	77	8.9999
...	chr14:21860234-21860465(-)$1	1	50	53	8.9999
...	chr10:73587755-73587992(-)$1	1	36	39	8.9999
..(	chr14:21865369-21865613(-)$1	1	38	41	8.9999
..(	chr17:26697115-26697386(-)$1	1	11	14	8.9999
)))	chrX:132888084-132888297(-)$1	1	53	56	8.9999
)))	chr5:40832671-40832936(-)$1	1	29	32	8.9999
((.	chr17:74557098-74557322(+)$1	1	2	5	8.9999
((.	chr11:75111422-75111676(+)$1	1	42	45	8.9999
)))	chr9:125642482-125642685(-)$1	1	184	187	8.9999
(((	chr9:136216198-136216425(+)$1	1	4	7	8.9999
((.	chr17:27050346-27050595(+)$1	1	27	30	8.9999
...	chr1:173833904-173834141(-)$1	1	87	90	8.9999
(((	chr3:186335034-186335239(+)$1	1	100	103	8.9999
..)	chr1:955514-955786(+)$1	1	87	90	8.9999
(((	chr11:122930024-122930231(-)$1	1	36	39	8.9999
..(	chr2:216246836-216247078(-)$1	1	2	5	8.9999
.((	chr2:232321093-232321334(-)$1	1	21	24	8.9999
((.	chr16:2204969-2205206(-)$1	1	6	9	8.9999
...	chr3:186336248-186336468(+)$1	1	30	33	8.9999
((.	chr2:29136428-29136671(+)$1	1	29	32	8.9999

#PSSM
U : 0.98	u : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_transcript_m1_run2.nuc.txt

#NT
AGAA	chr4:110670340-110670577(-)$1	237	66	70	12.0000
AGAA	chrX:70775728-70775976(+)$1	248	10	14	12.0000
AGAA	chr16:84129207-84129466(-)$1	259	95	99	12.0000
AGAA	chr12:104340515-104340740(+)$1	225	153	157	12.0000
AGAA	chr11:65826922-65827168(+)$1	246	67	71	12.0000
AGAA	chr2:216271055-216271273(-)$1	218	5	9	12.0000
AGAA	chr2:21235148-21235377(-)$1	229	61	65	12.0000
AGAA	chr1:169525869-169526118(-)$1	249	74	78	12.0000
AGAA	chr11:118919330-118919618(-)$1	288	18	22	12.0000
AGAA	chr14:50295229-50295495(-)$1	266	29	33	12.0000
AGAA	chrX:128614990-128615256(-)$1	266	129	133	12.0000
AGAA	chr17:78264267-78264536(+)$1	269	203	207	12.0000
AGAA	chr1:16891201-16891502(-)$1	301	87	91	12.0000
AGAA	chr3:105253417-105253775(+)$1	358	230	234	12.0000
AGAA	chr17:62499222-62499477(-)$1	255	79	83	12.0000
AGAA	chr1:113459702-113460020(-)$1	318	287	291	12.0000
AGAA	chr7:134642857-134643092(+)$1	235	55	59	12.0000
AGAA	chr22:38891788-38892042(-)$1	254	4	8	12.0000
AGAA	chr13:99092819-99093118(+)$1	299	74	78	12.0000
AGAA	chr9:111637125-111637351(-)$1	226	55	59	12.0000
AGAA	chr2:219294224-219294488(+)$1	264	31	35	12.0000
AGAA	chr9:33036470-33036684(+)$1	214	107	111	12.0000
AGAA	chr17:48827847-48828164(+)$1	317	12	16	12.0000
agaa	chr14:56103815-56104119(+)$1	304	3	7	12.0000
AGAA	chr6:7577152-7577375(+)$1	223	37	41	12.0000
AGAA	chr9:79825430-79825671(+)$1	241	177	181	12.0000
agaa	chr22:37906118-37906396(-)$1	278	56	60	12.0000
AGAA	chr5:149826283-149826576(-)$1	293	22	26	12.0000
AGAA	chr15:93487570-93487835(+)$1	265	101	105	12.0000
AGAA	chr5:43294690-43294938(-)$1	248	16	20	12.0000
AGAA	chr15:93484950-93485286(+)$1	336	107	111	12.0000
AGAA	chr5:179147426-179147660(+)$1	234	188	192	12.0000
AGAA	chr2:242186084-242186315(-)$1	231	25	29	12.0000
AGAA	chr6:119611747-119612018(-)$1	271	88	92	12.0000
AGAA	chr9:131365754-131365969(+)$1	215	118	122	12.0000
AGAA	chr6:170118780-170119021(-)$1	241	25	29	12.0000
AGAA	chr8:25156357-25156709(+)$1	352	112	116	12.0000
AGAA	chr6:7574853-7575100(+)$1	247	78	82	12.0000
AGAA	chr16:11990395-11990733(-)$1	338	61	65	12.0000
AGAA	chr2:21225974-21226232(-)$1	258	115	119	12.0000
AGAA	chr8:11687693-11687958(+)$1	265	78	82	12.0000
AGAA	chr11:111622797-111623117(-)$1	320	168	172	12.0000
AGAA	chr12:936222-936491(+)$1	269	25	29	12.0000
AGAA	chr20:43538769-43539063(+)$1	294	100	104	12.0000
AGAA	chr4:83348500-83348763(-)$1	263	88	92	12.0000
AGAA	chr2:167141010-167141307(-)$1	297	21	25	12.0000
AGAA	chr1:35652506-35652825(-)$1	319	123	127	12.0000
AGAA	chr1:186329796-186330026(-)$1	230	50	54	12.0000
AGAA	chr6:155129748-155130007(+)$1	259	2	6	12.0000
AGAA	chr19:2110712-2110997(-)$1	285	163	167	12.0000
AGAA	chr2:54873245-54873527(+)$1	282	92	96	12.0000
AGAA	chr3:58081810-58082044(+)$1	234	82	86	12.0000
AGAA	chr5:138223148-138223431(+)$1	283	112	116	12.0000
AGAA	chr6:144809722-144809979(+)$1	257	18	22	12.0000
AGAA	chr14:104120983-104121268(+)$1	285	33	37	12.0000
AGAA	chr6:31595899-31596113(+)$1	214	209	213	12.0000
AGAA	chr21:47641754-47641986(-)$1	232	27	31	12.0000
AGAA	chr6:144765325-144765554(+)$1	229	2	6	12.0000
AGAA	chr20:45874802-45875173(-)$1	371	20	24	12.0000
AGAA	chr9:127998776-127999060(-)$1	284	18	22	12.0000
AGAA	chr4:83348304-83348557(-)$1	253	33	37	12.0000
AGAA	chr2:70443236-70443480(-)$1	244	54	58	12.0000
AGAA	chr21:45107298-45107653(+)$1	355	31	35	12.0000
AGAA	chr12:56493629-56493914(+)$1	285	47	51	12.0000
AGAA	chr8:17827026-17827285(+)$1	259	107	111	12.0000
AGAA	chr1:153963994-153964252(+)$1	258	153	157	12.0000
AGAA	chr2:178083874-178084088(+)$1	214	141	145	12.0000
AGAA	chr19:10792564-10792876(+)$1	312	107	111	12.0000
AGAA	chr14:104123780-104124070(+)$1	290	27	31	12.0000
AGAA	chr6:56401476-56401836(-)$1	360	26	30	12.0000
AGAA	chr12:9261872-9262095(-)$1	223	149	153	12.0000
AGAA	chr20:52831744-52832077(+)$1	333	53	57	12.0000
AGAA	chr14:73577518-73577862(+)$1	344	70	74	12.0000
agaa	chr6:56499498-56499799(-)$1	301	52	56	12.0000
AGAA	chr6:7568644-7568914(+)$1	270	23	27	12.0000
AGAA	chr1:19523536-19523803(-)$1	267	172	176	12.0000
AGAA	chr12:9254111-9254366(-)$1	255	37	41	12.0000
AGAA	chr2:54856244-54856477(+)$1	233	164	168	12.0000
AGAA	chr3:49139551-49139797(-)$1	246	54	58	12.0000
AGAA	chr19:50000744-50000952(+)$1	208	57	61	12.0000
AGAA	chr9:131381098-131381364(+)$1	266	111	115	12.0000
AGAA	chr16:89350204-89350477(-)$1	273	1	5	12.0000
AGAA	chr8:95539418-95539687(-)$1	269	35	39	12.0000
AGAA	chr20:43703574-43703956(+)$1	382	112	116	12.0000
AGAA	chr4:151836659-151836912(-)$1	253	73	77	12.0000

#otherMatches

#Struct PSSM
ddd]	chr10:33214809-33215138(-)$1	329	185	189	12.0000
hhhh	chr4:110670340-110670577(-)$1	237	66	70	12.0000
:AKK	chrX:70775728-70775976(+)$1	248	10	14	12.0000
ffff	chr16:84129207-84129466(-)$1	259	95	99	12.0000
YYDD	chr12:104340515-104340740(+)$1	225	153	157	12.0000
dddd	chr11:65826922-65827168(+)$1	246	67	71	12.0000
FF:b	chr2:216271055-216271273(-)$1	218	5	9	12.0000
7ccc	chr2:21235148-21235377(-)$1	229	61	65	12.0000
[ccc	chr1:169525869-169526118(-)$1	249	74	78	12.0000
EE::	chr11:118919330-118919618(-)$1	288	18	22	12.0000
bbss	chr14:50295229-50295495(-)$1	266	29	33	12.0000
f::i	chrX:128614990-128615256(-)$1	266	129	133	12.0000
]eee	chr17:78264267-78264536(+)$1	269	203	207	12.0000
>>>>	chr1:16891201-16891502(-)$1	301	87	91	12.0000
eeee	chr3:105253417-105253775(+)$1	358	230	234	12.0000
mmmc	chr17:62499222-62499477(-)$1	255	79	83	12.0000
pppp	chr1:113459702-113460020(-)$1	318	287	291	12.0000
hhhq	chr7:134642857-134643092(+)$1	235	55	59	12.0000
ggg[	chr22:38891788-38892042(-)$1	254	4	8	12.0000
GGGL	chr13:99092819-99093118(+)$1	299	74	78	12.0000
ff[b	chr9:111637125-111637351(-)$1	226	55	59	12.0000
"""c	chr2:219294224-219294488(+)$1	264	31	35	12.0000
ffnn	chr9:33036470-33036684(+)$1	214	107	111	12.0000
ddds	chr17:48827847-48828164(+)$1	317	12	16	12.0000
HHHH	chr14:56103815-56104119(+)$1	304	3	7	12.0000
pppp	chr6:7577152-7577375(+)$1	223	37	41	12.0000
EEEE	chr9:79825430-79825671(+)$1	241	177	181	12.0000
::::	chr22:37906118-37906396(-)$1	278	56	60	12.0000
::::	chr5:149826283-149826576(-)$1	293	22	26	12.0000
::::	chr15:93487570-93487835(+)$1	265	101	105	12.0000
ggg!	chr5:43294690-43294938(-)$1	248	16	20	12.0000
#bb[	chr15:93484950-93485286(+)$1	336	107	111	12.0000
hhh4	chr5:179147426-179147660(+)$1	234	188	192	12.0000
OOOO	chr2:242186084-242186315(-)$1	231	25	29	12.0000
ddd!	chr6:119611747-119612018(-)$1	271	88	92	12.0000
]ggg	chr9:131365754-131365969(+)$1	215	118	122	12.0000
pppp	chr6:170118780-170119021(-)$1	241	25	29	12.0000
e"""	chr8:25156357-25156709(+)$1	352	112	116	12.0000
cc!!	chr6:7574853-7575100(+)$1	247	78	82	12.0000
gggg	chr16:11990395-11990733(-)$1	338	61	65	12.0000
====	chr2:21225974-21226232(-)$1	258	115	119	12.0000
8888	chr8:11687693-11687958(+)$1	265	78	82	12.0000
ennn	chr11:111622797-111623117(-)$1	320	168	172	12.0000
====	chr12:936222-936491(+)$1	269	25	29	12.0000
((((	chr20:43538769-43539063(+)$1	294	100	104	12.0000
wwww	chr4:83348500-83348763(-)$1	263	88	92	12.0000
ddd[	chr2:167141010-167141307(-)$1	297	21	25	12.0000
gggg	chr1:35652506-35652825(-)$1	319	123	127	12.0000
ccc4	chr1:186329796-186330026(-)$1	230	50	54	12.0000
eee[	chr6:155129748-155130007(+)$1	259	2	6	12.0000
D:::	chr19:2110712-2110997(-)$1	285	163	167	12.0000
CCRR	chr2:54873245-54873527(+)$1	282	92	96	12.0000
&&&&	chr3:58081810-58082044(+)$1	234	82	86	12.0000
c333	chr5:138223148-138223431(+)$1	283	112	116	12.0000
ffff	chr6:144809722-144809979(+)$1	257	18	22	12.0000
qqqq	chr14:104120983-104121268(+)$1	285	33	37	12.0000
::::	chr6:31595899-31596113(+)$1	214	209	213	12.0000
qqqq	chr21:47641754-47641986(-)$1	232	27	31	12.0000
::::	chr6:144765325-144765554(+)$1	229	2	6	12.0000
::::	chr20:45874802-45875173(-)$1	371	20	24	12.0000
nnnb	chr9:127998776-127999060(-)$1	284	18	22	12.0000
ffff	chr4:83348304-83348557(-)$1	253	33	37	12.0000
ffff	chr2:70443236-70443480(-)$1	244	54	58	12.0000
NNNN	chr21:45107298-45107653(+)$1	355	31	35	12.0000
ccc:	chr12:56493629-56493914(+)$1	285	47	51	12.0000
mccc	chr8:17827026-17827285(+)$1	259	107	111	12.0000
d"""	chr1:153963994-153964252(+)$1	258	153	157	12.0000
c===	chr2:178083874-178084088(+)$1	214	141	145	12.0000
eeee	chr19:10792564-10792876(+)$1	312	107	111	12.0000
::::	chr14:104123780-104124070(+)$1	290	27	31	12.0000
A{JJ	chr6:56401476-56401836(-)$1	360	26	30	12.0000
!!==	chr12:9261872-9262095(-)$1	223	149	153	12.0000
gggg	chr20:52831744-52832077(+)$1	333	53	57	12.0000
33dd	chr14:73577518-73577862(+)$1	344	70	74	12.0000
]fff	chr6:56499498-56499799(-)$1	301	52	56	12.0000
''''	chr6:7568644-7568914(+)$1	270	23	27	12.0000
gggg	chr1:19523536-19523803(-)$1	267	172	176	12.0000
ff::	chr12:9254111-9254366(-)$1	255	37	41	12.0000
oooo	chr2:54856244-54856477(+)$1	233	164	168	12.0000
::::	chr3:49139551-49139797(-)$1	246	54	58	12.0000
pppd	chr19:50000744-50000952(+)$1	208	57	61	12.0000
ZZZD	chr9:131381098-131381364(+)$1	266	111	115	12.0000
::::	chr16:89350204-89350477(-)$1	273	1	5	12.0000
C::e	chr8:95539418-95539687(-)$1	269	35	39	12.0000
ee##	chr20:43703574-43703956(+)$1	382	112	116	12.0000
JJJJ	chr4:151836659-151836912(-)$1	253	73	77	12.0000

#DB
))).	chr10:33214809-33215138(-)$1	1	185	189	12.0000
((((	chr4:110670340-110670577(-)$1	1	66	70	12.0000
.(..	chrX:70775728-70775976(+)$1	1	10	14	12.0000
))))	chr16:84129207-84129466(-)$1	1	95	99	12.0000
..))	chr12:104340515-104340740(+)$1	1	153	157	12.0000
))))	chr11:65826922-65827168(+)$1	1	67	71	12.0000
((.(	chr2:216271055-216271273(-)$1	1	5	9	12.0000
.)))	chr2:21235148-21235377(-)$1	1	61	65	12.0000
.(((	chr1:169525869-169526118(-)$1	1	74	78	12.0000
((..	chr11:118919330-118919618(-)$1	1	18	22	12.0000
((..	chr14:50295229-50295495(-)$1	1	29	33	12.0000
)..(	chrX:128614990-128615256(-)$1	1	129	133	12.0000
.)))	chr17:78264267-78264536(+)$1	1	203	207	12.0000
....	chr1:16891201-16891502(-)$1	1	87	91	12.0000
((((	chr3:105253417-105253775(+)$1	1	230	234	12.0000
...)	chr17:62499222-62499477(-)$1	1	79	83	12.0000
....	chr1:113459702-113460020(-)$1	1	287	291	12.0000
(((.	chr7:134642857-134643092(+)$1	1	55	59	12.0000
(((.	chr22:38891788-38892042(-)$1	1	4	8	12.0000
(((.	chr13:99092819-99093118(+)$1	1	74	78	12.0000
((.(	chr9:111637125-111637351(-)$1	1	55	59	12.0000
...(	chr2:219294224-219294488(+)$1	1	31	35	12.0000
((..	chr9:33036470-33036684(+)$1	1	107	111	12.0000
(((.	chr17:48827847-48828164(+)$1	1	12	16	12.0000
((((	chr14:56103815-56104119(+)$1	1	3	7	12.0000
....	chr6:7577152-7577375(+)$1	1	37	41	12.0000
))))	chr9:79825430-79825671(+)$1	1	177	181	12.0000
....	chr22:37906118-37906396(-)$1	1	56	60	12.0000
....	chr5:149826283-149826576(-)$1	1	22	26	12.0000
....	chr15:93487570-93487835(+)$1	1	101	105	12.0000
(((.	chr5:43294690-43294938(-)$1	1	16	20	12.0000
.((.	chr15:93484950-93485286(+)$1	1	107	111	12.0000
))).	chr5:179147426-179147660(+)$1	1	188	192	12.0000
....	chr2:242186084-242186315(-)$1	1	25	29	12.0000
(((.	chr6:119611747-119612018(-)$1	1	88	92	12.0000
.)))	chr9:131365754-131365969(+)$1	1	118	122	12.0000
....	chr6:170118780-170119021(-)$1	1	25	29	12.0000
(...	chr8:25156357-25156709(+)$1	1	112	116	12.0000
((..	chr6:7574853-7575100(+)$1	1	78	82	12.0000
))))	chr16:11990395-11990733(-)$1	1	61	65	12.0000
))))	chr2:21225974-21226232(-)$1	1	115	119	12.0000
....	chr8:11687693-11687958(+)$1	1	78	82	12.0000
(...	chr11:111622797-111623117(-)$1	1	168	172	12.0000
((((	chr12:936222-936491(+)$1	1	25	29	12.0000
....	chr20:43538769-43539063(+)$1	1	100	104	12.0000
....	chr4:83348500-83348763(-)$1	1	88	92	12.0000
(((.	chr2:167141010-167141307(-)$1	1	21	25	12.0000
))))	chr1:35652506-35652825(-)$1	1	123	127	12.0000
))).	chr1:186329796-186330026(-)$1	1	50	54	12.0000
(((.	chr6:155129748-155130007(+)$1	1	2	6	12.0000
(...	chr19:2110712-2110997(-)$1	1	163	167	12.0000
((..	chr2:54873245-54873527(+)$1	1	92	96	12.0000
....	chr3:58081810-58082044(+)$1	1	82	86	12.0000
)...	chr5:138223148-138223431(+)$1	1	112	116	12.0000
((((	chr6:144809722-144809979(+)$1	1	18	22	12.0000
....	chr14:104120983-104121268(+)$1	1	33	37	12.0000
....	chr6:31595899-31596113(+)$1	1	209	213	12.0000
....	chr21:47641754-47641986(-)$1	1	27	31	12.0000
....	chr6:144765325-144765554(+)$1	1	2	6	12.0000
....	chr20:45874802-45875173(-)$1	1	20	24	12.0000
...)	chr9:127998776-127999060(-)$1	1	18	22	12.0000
))))	chr4:83348304-83348557(-)$1	1	33	37	12.0000
))))	chr2:70443236-70443480(-)$1	1	54	58	12.0000
....	chr21:45107298-45107653(+)$1	1	31	35	12.0000
))).	chr12:56493629-56493914(+)$1	1	47	51	12.0000
.)))	chr8:17827026-17827285(+)$1	1	107	111	12.0000
(...	chr1:153963994-153964252(+)$1	1	153	157	12.0000
))))	chr2:178083874-178084088(+)$1	1	141	145	12.0000
))))	chr19:10792564-10792876(+)$1	1	107	111	12.0000
....	chr14:104123780-104124070(+)$1	1	27	31	12.0000
(.((	chr6:56401476-56401836(-)$1	1	26	30	12.0000
..((	chr12:9261872-9262095(-)$1	1	149	153	12.0000
((((	chr20:52831744-52832077(+)$1	1	53	57	12.0000
..))	chr14:73577518-73577862(+)$1	1	70	74	12.0000
.)))	chr6:56499498-56499799(-)$1	1	52	56	12.0000
....	chr6:7568644-7568914(+)$1	1	23	27	12.0000
((((	chr1:19523536-19523803(-)$1	1	172	176	12.0000
))..	chr12:9254111-9254366(-)$1	1	37	41	12.0000
....	chr2:54856244-54856477(+)$1	1	164	168	12.0000
....	chr3:49139551-49139797(-)$1	1	54	58	12.0000
...)	chr19:50000744-50000952(+)$1	1	57	61	12.0000
...)	chr9:131381098-131381364(+)$1	1	111	115	12.0000
....	chr16:89350204-89350477(-)$1	1	1	5	12.0000
(..(	chr8:95539418-95539687(-)$1	1	35	39	12.0000
((..	chr20:43703574-43703956(+)$1	1	112	116	12.0000
))))	chr4:151836659-151836912(-)$1	1	73	77	12.0000

#PSSM
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	
A : 0.96	a : 0.03	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_UTR_m1_run2.nuc.txt

#NT
UCCUGUG	chr11:5289579-5289797(-)$1	218	122	129	12.1475
UCCUGGA	chr11:62394706-62394924(-)$1	218	29	36	12.9672
UCCUGGU	chr2:10924985-10925253(-)$1	268	229	236	12.7213
UCCUGCG	chr11:62393137-62393380(-)$1	243	38	45	12.2295
UCAUGGG	chr6:30593206-30593518(+)$1	312	130	137	12.7213
UCCUGGG	chr19:50002668-50002875(+)$1	207	43	50	16.8196
UCCUGGA	chr6:26199233-26199513(-)$1	280	229	236	12.9672
CCCUGGG	chr12:50152385-50152625(+)$1	240	119	126	13.3770
uccuagg	chr19:51856368-51856626(-)$1	258	29	36	12.3934
UCCUGGG	chr2:176042862-176043125(-)$1	263	33	40	16.8196
UGCUGGG	chr3:197677731-197677950(+)$1	219	78	85	12.6393
CCCUGGG	chr8:146017650-146017871(-)$1	221	47	54	13.3770
UCAUGGG	chr16:18809920-18810225(-)$1	305	175	182	12.7213
UCAUGGG	chr11:18424425-18424660(+)$1	235	97	104	12.7213
UCCUGGG	chr11:111959577-111959836(+)$1	259	70	77	16.8196
UCCUAGG	chr19:58898539-58898784(+)$1	245	191	198	12.3934
CCCUGGG	chr10:5488481-5488738(+)$1	257	57	64	13.3770
GCCUGGG	chr11:764229-764530(+)$1	301	255	262	13.4590
GCCUGGG	chr19:51848364-51848707(-)$1	343	104	111	13.4590
UCCUGGA	chr1:201104631-201104898(-)$1	267	13	20	12.9672
UCCUGGG	chr19:40325207-40325433(-)$1	226	191	198	16.8196
gccuggg	chr19:40957173-40957496(-)$1	323	9	16	13.4590
ACCUGGG	chr19:1440282-1440534(+)$1	252	84	91	13.2131
UCCUGGG	chr6:160210452-160210729(-)$1	277	101	108	16.8196
ACCUGGG	chr8:124219802-124220083(+)$1	281	19	26	13.2131
UCCUGGG	chr19:19638715-19638930(+)$1	215	28	35	16.8196
UUCUGGG	chr6:30690213-30690424(+)$1	211	100	107	12.4754
UCCUGGG	chr8:144662222-144662477(-)$1	255	47	54	16.8196
GCCUGGG	chrX:47445955-47446234(+)$1	279	252	259	13.4590
CCCUGGG	chr1:40839547-40839877(+)$1	330	145	152	13.3770
UCCUGGC	chr16:18800317-18800541(-)$1	224	122	129	12.7213
GCCUGGG	chr1:156107403-156107686(+)$1	283	183	190	13.4590
UCCUGGA	chr1:156280764-156281029(-)$1	265	92	99	12.9672
cccuggg	chr19:59055968-59056198(+)$1	230	130	137	13.3770
UCAUGGG	chr17:39847029-39847269(+)$1	240	36	43	12.7213
UCCUGGG	chr19:582648-582868(+)$1	220	36	43	16.8196
UCCUGGC	chr11:63743590-63743898(+)$1	308	0	7	12.7213
UCCUUGG	chr12:57882700-57882982(+)$1	282	203	210	12.3934
UCCUGCG	chr16:56642405-56642650(+)$1	245	177	184	12.2295
UCCUGGU	chr2:10924957-10925181(-)$1	224	157	164	12.7213
UCCUCGG	chr1:1167171-1167447(-)$1	276	144	151	12.3114
UGCUGGG	chr6:26199038-26199255(-)$1	217	73	80	12.6393
UCGUGGG	chr17:7479860-7480111(+)$1	251	99	106	12.3934
UCCGGGG	chr10:27443077-27443397(-)$1	320	71	78	12.6393
UGCUGGG	chr12:49663294-49663531(+)$1	237	7	14	12.6393
UCCAGGG	chr19:13054635-13054875(+)$1	240	103	110	12.8852
UCCAGGG	chr5:140025045-140025353(-)$1	308	45	52	12.8852
UCCCGGG	chr5:148930760-148931002(-)$1	242	31	38	12.5573
UUCUGGG	chr12:54059023-54059275(-)$1	252	101	108	12.4754
UCCUGGG	chr19:49510174-49510409(+)$1	235	6	13	16.8196
ACCUGGG	chr11:760107-760354(+)$1	247	120	127	13.2131
UCCUGGA	chr15:72498967-72499213(-)$1	246	59	66	12.9672
UCCAGGG	chr1:156104901-156105197(+)$1	296	226	233	12.8852
UCCUGGG	chr9:86594976-86595215(-)$1	239	221	228	16.8196
UCCUUGG	chr3:136048662-136048946(+)$1	284	172	179	12.3934
UCCGGGG	chr19:19030022-19030280(-)$1	258	159	166	12.6393
UGCUGGG	chr14:23502718-23502984(-)$1	266	10	17	12.6393
UCCAGGG	chr5:85913659-85913889(+)$1	230	39	46	12.8852
GCCUGGG	chr15:72492714-72492940(-)$1	226	77	84	13.4590
UCAUGGG	chr17:45299082-45299321(+)$1	239	100	107	12.7213

#otherMatches

#Struct PSSM
C:ccc[h	chr6:7313275-7313518(-)$1	243	21	28	12.8852
meeeeeC	chr11:5289579-5289797(-)$1	218	122	129	12.1475
:eeeee[	chr11:62394706-62394924(-)$1	218	29	36	12.9672
ffffff2	chr2:10924985-10925253(-)$1	268	229	236	12.7213
FFFFFF{	chr11:62393137-62393380(-)$1	243	38	45	12.2295
%%%%ggg	chr6:30593206-30593518(+)$1	312	130	137	12.7213
dddd[cc	chr19:50002668-50002875(+)$1	207	43	50	16.8196
dadddd]	chr6:26199233-26199513(-)$1	280	229	236	12.9672
[iiiiii	chr12:50152385-50152625(+)$1	240	119	126	13.3770
ddddccc	chr19:51856368-51856626(-)$1	258	29	36	12.3934
###a[dd	chr2:176042862-176043125(-)$1	263	33	40	16.8196
eCCC{CC	chr3:197677731-197677950(+)$1	219	78	85	12.6393
==::ddd	chr8:146017650-146017871(-)$1	221	47	54	13.3770
ooooocc	chr16:18809920-18810225(-)$1	305	175	182	12.7213
rriiiii	chr11:18424425-18424660(+)$1	235	97	104	12.7213
!!eeeee	chr11:111959577-111959836(+)$1	259	70	77	16.8196
YDDDD}D	chr19:58898539-58898784(+)$1	245	191	198	12.3934
iiiiiii	chr10:5488481-5488738(+)$1	257	57	64	13.3770
ccooooo	chr11:764229-764530(+)$1	301	255	262	13.4590
bbfffff	chr19:51848364-51848707(-)$1	343	104	111	13.4590
CLLLDDD	chr1:201104631-201104898(-)$1	267	13	20	12.9672
::EEEEE	chr19:40325207-40325433(-)$1	226	191	198	16.8196
=======	chr19:40957173-40957496(-)$1	323	9	16	13.4590
"""eeee	chr19:1440282-1440534(+)$1	252	84	91	13.2131
uuuuuuu	chr6:160210452-160210729(-)$1	277	101	108	16.8196
:FFFFFF	chr8:124219802-124220083(+)$1	281	19	26	13.2131
FFKKEEE	chr19:19638715-19638930(+)$1	215	28	35	16.8196
nneeeee	chr6:30690213-30690424(+)$1	211	100	107	12.4754
ndddd]d	chr8:144662222-144662477(-)$1	255	47	54	16.8196
bb:dddd	chrX:47445955-47446234(+)$1	279	252	259	13.4590
p======	chr1:40839547-40839877(+)$1	330	145	152	13.3770
BFFFFFF	chr16:18800317-18800541(-)$1	224	122	129	12.7213
HHH:fff	chr1:156107403-156107686(+)$1	283	183	190	13.4590
ggggggg	chr1:156280764-156281029(-)$1	265	92	99	12.9672
[gggggg	chr19:59055968-59056198(+)$1	230	130	137	13.3770
KCCC{EE	chr17:39847029-39847269(+)$1	240	36	43	12.7213
IIIdddd	chr19:582648-582868(+)$1	220	36	43	16.8196
::EEEEE	chr11:63743590-63743898(+)$1	308	0	7	12.7213
]bb====	chr12:57882700-57882982(+)$1	282	203	210	12.3934
c[bb!!c	chr16:56642405-56642650(+)$1	245	177	184	12.2295
ffffff2	chr2:10924957-10925181(-)$1	224	157	164	12.7213
edddd##	chr1:1167171-1167447(-)$1	276	144	151	12.3114
fffgggg	chr6:26199038-26199255(-)$1	217	73	80	12.6393
ooeeeee	chr17:7479860-7480111(+)$1	251	99	106	12.3934
fff!!cc	chr10:27443077-27443397(-)$1	320	71	78	12.6393
A{FFFFF	chr12:49663294-49663531(+)$1	237	7	14	12.6393
ddaa]dd	chr19:13054635-13054875(+)$1	240	103	110	12.8852
D:::eee	chr5:140025045-140025353(-)$1	308	45	52	12.8852
333eeee	chr5:148930760-148931002(-)$1	242	31	38	12.5573
zzzzeee	chr12:54059023-54059275(-)$1	252	101	108	12.4754
EEE{DDD	chr19:49510174-49510409(+)$1	235	6	13	16.8196
'cccmmm	chr11:760107-760354(+)$1	247	120	127	13.2131
fff]bb]	chr15:72498967-72499213(-)$1	246	59	66	12.9672
oooeeee	chr1:156104901-156105197(+)$1	296	226	233	12.8852
CCC}A}I	chr9:86594976-86595215(-)$1	239	221	228	16.8196
b[eeeee	chr3:136048662-136048946(+)$1	284	172	179	12.3934
2ffffff	chr19:19030022-19030280(-)$1	258	159	166	12.6393
HHHHHHH	chr14:23502718-23502984(-)$1	266	10	17	12.6393
2ccc22c	chr5:85913659-85913889(+)$1	230	39	46	12.8852
liiiiii	chr15:72492714-72492940(-)$1	226	77	84	13.4590
=======	chr17:45299082-45299321(+)$1	239	100	107	12.7213

#DB
(.(((.(	chr6:7313275-7313518(-)$1	1	21	28	12.8852
.))))))	chr11:5289579-5289797(-)$1	1	122	129	12.1475
.(((((.	chr11:62394706-62394924(-)$1	1	29	36	12.9672
)))))).	chr2:10924985-10925253(-)$1	1	229	236	12.7213
((((((.	chr11:62393137-62393380(-)$1	1	38	45	12.2295
....(((	chr6:30593206-30593518(+)$1	1	130	137	12.7213
((((.((	chr19:50002668-50002875(+)$1	1	43	50	16.8196
)))))).	chr6:26199233-26199513(-)$1	1	229	236	12.9672
.((((((	chr12:50152385-50152625(+)$1	1	119	126	13.3770
(((((((	chr19:51856368-51856626(-)$1	1	29	36	12.3934
...(.((	chr2:176042862-176043125(-)$1	1	33	40	16.8196
)(((.((	chr3:197677731-197677950(+)$1	1	78	85	12.6393
))..(((	chr8:146017650-146017871(-)$1	1	47	54	13.3770
.....))	chr16:18809920-18810225(-)$1	1	175	182	12.7213
..)))))	chr11:18424425-18424660(+)$1	1	97	104	12.7213
..(((((	chr11:111959577-111959836(+)$1	1	70	77	16.8196
.)))).)	chr19:58898539-58898784(+)$1	1	191	198	12.3934
)))))))	chr10:5488481-5488738(+)$1	1	57	64	13.3770
((.....	chr11:764229-764530(+)$1	1	255	262	13.4590
(((((((	chr19:51848364-51848707(-)$1	1	104	111	13.4590
(...(((	chr1:201104631-201104898(-)$1	1	13	20	12.9672
..)))))	chr19:40325207-40325433(-)$1	1	191	198	16.8196
(((((((	chr19:40957173-40957496(-)$1	1	9	16	13.4590
...((((	chr19:1440282-1440534(+)$1	1	84	91	13.2131
.......	chr6:160210452-160210729(-)$1	1	101	108	16.8196
.((((((	chr8:124219802-124220083(+)$1	1	19	26	13.2131
((..(((	chr19:19638715-19638930(+)$1	1	28	35	16.8196
..)))))	chr6:30690213-30690424(+)$1	1	100	107	12.4754
.)))).)	chr8:144662222-144662477(-)$1	1	47	54	16.8196
)).((((	chrX:47445955-47446234(+)$1	1	252	259	13.4590
.))))))	chr1:40839547-40839877(+)$1	1	145	152	13.3770
(((((((	chr16:18800317-18800541(-)$1	1	122	129	12.7213
(((.(((	chr1:156107403-156107686(+)$1	1	183	190	13.4590
)))))))	chr1:156280764-156281029(-)$1	1	92	99	12.9672
.((((((	chr19:59055968-59056198(+)$1	1	130	137	13.3770
.(((.((	chr17:39847029-39847269(+)$1	1	36	43	12.7213
(((((((	chr19:582648-582868(+)$1	1	36	43	16.8196
..(((((	chr11:63743590-63743898(+)$1	1	0	7	12.7213
.))))))	chr12:57882700-57882982(+)$1	1	203	210	12.3934
(.((..(	chr16:56642405-56642650(+)$1	1	177	184	12.2295
)))))).	chr2:10924957-10925181(-)$1	1	157	164	12.7213
(((((..	chr1:1167171-1167447(-)$1	1	144	151	12.3114
)))((((	chr6:26199038-26199255(-)$1	1	73	80	12.6393
..)))))	chr17:7479860-7480111(+)$1	1	99	106	12.3934
(((..((	chr10:27443077-27443397(-)$1	1	71	78	12.6393
(.(((((	chr12:49663294-49663531(+)$1	1	7	14	12.6393
)))).))	chr19:13054635-13054875(+)$1	1	103	110	12.8852
(...(((	chr5:140025045-140025353(-)$1	1	45	52	12.8852
...))))	chr5:148930760-148931002(-)$1	1	31	38	12.5573
....)))	chr12:54059023-54059275(-)$1	1	101	108	12.4754
(((.(((	chr19:49510174-49510409(+)$1	1	6	13	16.8196
.(((...	chr11:760107-760354(+)$1	1	120	127	13.2131
))).)).	chr15:72498967-72499213(-)$1	1	59	66	12.9672
...))))	chr1:156104901-156105197(+)$1	1	226	233	12.8852
))).).)	chr9:86594976-86595215(-)$1	1	221	228	16.8196
(.(((((	chr3:136048662-136048946(+)$1	1	172	179	12.3934
.))))))	chr19:19030022-19030280(-)$1	1	159	166	12.6393
(((((((	chr14:23502718-23502984(-)$1	1	10	17	12.6393
.)))..)	chr5:85913659-85913889(+)$1	1	39	46	12.8852
.))))))	chr15:72492714-72492940(-)$1	1	77	84	13.4590
)))))))	chr17:45299082-45299321(+)$1	1	100	107	12.7213

#PSSM
U : 0.75	G : 0.08	C : 0.06	A : 0.04	u : 0.01	g : 0.01	c : 0.01	
C : 0.85	G : 0.06	c : 0.04	U : 0.03	
C : 0.85	A : 0.08	c : 0.04	G : 0.01	
U : 0.81	A : 0.08	u : 0.04	G : 0.03	C : 0.01	
G : 0.88	g : 0.03	U : 0.03	a : 0.01	A : 0.01	C : 0.01	
G : 0.90	g : 0.04	C : 0.03	U : 0.01	
G : 0.80	A : 0.08	g : 0.04	U : 0.03	C : 0.03	

#score	823.4590163934437
#seq	61
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_transcript_m1_run1.nuc.txt

#NT
uuuuuuauuuuuauuuuuuuugauacagagucucacucugucacucaggcuggagugcagugacaugaucucagcucacugcaaccuccgcuuccuggguucaagcaauucucaugccucagccuccugaguagcugagaccacaggc	chr3:196557672-196557926(+)$1	254	82	230	275.8032
uuuucuuuucuuuuuuuuuuuaagaccgugucuuacucugucacccaggcuggggugcaguggugcgaucucggcucacugcaaccuccgccucccagguucaaacgauucuccugccucagccucucguguagcuggaauuacagcc	chr18:3596070-3596317(+)$1	247	84	232	278.1803
uuuuuuuuuuuuuuuuuuuuugagacagagccaugcucuguugcccaggccggagugcaguggugugaucucagcucacugcaaccuccgccuccuggguucaagugauucuccugccucagccucccaaguagcugcgacuacaagc	chr17:74292712-74292961(-)$1	249	82	230	297.7704
uuucggauuuuuuuuuuauuuggguaagagucucgcucuguugcccaggcuggagugcaguggugcgaucucagcucacugcaaccuccccuucccagguucaagcgauucccuuaccucagccucccgaguagcugggacuacaggc	chr6:144674162-144674410(+)$1	248	85	233	277.7704
uuuuuuuuuuuuuuuuuuuugggagacggagucucccucuguuuccaggcuggagugcaguggugccaucuuggcugacugcaaccuucaucucccggguucaagugauucuucuaccucagccucccaaguagcugagacuacgggc	chr7:29451859-29452121(+)$1	262	85	233	242.0327
uuuuuuuuuuuuuuuuuuuuugagacggaguuucacuccguugcccaggguggagugcaguggugugaucucagcucacugcaacuuccgccuccuggauugaaaugauucuccugccucagccuccugaguagcuggaauuaaaggc	chrX:128640514-128640772(-)$1	258	85	233	282.5245
uuuuuuuuuuuuggggggggggggacggagucuugcugcaacgcccaggcuggagugcaauggcacuaucucagcucgcugcaaccuucaccuccuggguucaagcaauucuccugccucagccuccugaguagcugggaauauaggu	chr14:75598950-75599205(-)$1	255	94	242	240.1475
AUCCuuuuuuuuuuuuuuuugugagacagaguguugcucugucgccaggcuggagugcaguggcgugaucucagcucacugcaaccuccgccuccuggguucaagugauucuccugccucagcuucccgaguagcugggacuacaggc	chr2:63205259-63205482(+)$1	223	73	221	251.6229
ACuuuuuuuuuuuuuuuuuuugagacagagucucacucugucacccgggcuggagugcaauggugcagucucggcucacugcaaccucugccuccuggauucaagcaauucuccugccucagccucucaaguagcugggauuacaggc	chr3:30694693-30694918(+)$1	225	47	195	288.0983
uaGAuuuuuuuuuuuuuuuuugaggcagggucuugcccugucccccgggcuggaguucagugacgugaucacuacucacuacaaccucaaccuccgaggcucaagugauccucccaccucagccucccaaguagcugggacuacaggc	chr8:16923965-16924230(+)$1	265	83	231	255.5573
uuuuuuuuuuuuugggggggggggguggagucuugcccugucacccaggcuagagugcaguggcgugaucucaccucacugcaaccuucuccucccggguucaagugauucuccugccucagccucccgaguagcugagacuacaggu	chr2:63178565-63178841(+)$1	276	91	239	260.3114
uuuucauuauuauuauuuuuucagacugagucucacucugucgcccaggcaggagugcaauggcgccaucucggcugacugcaaacuccaccucccggguucaagcgauucuccugccucagucuccugaguagcugagauuacaggc	chr2:242237630-242237883(-)$1	253	82	230	268.4262
AAuuuuuuuuugguuuguuuuugagacggagccuugcucugucgccacgcuggagugcaguggcacgaucucggcucacugcaaccucugccucccagguucaagugauucccuuaccucagccucccgaguagcugggacuucaggu	chr14:24903538-24903775(+)$1	237	69	217	231.8688
uuuuuuuuuuuuuuuuuuuuugagauggagucucccucugucaccuaggcuggagugcaauggcacgauuuuggcucacugcaacuuccgccuucuggguucaagcgauucuccugcuucagccucccaagcagcugggacuccaggc	chr11:46755254-46755514(+)$1	260	81	229	277.1147
UCuuuuuuuuuuuuuuuuggagacaggguaucucccugugucacccaggcuggagugcaguggccugauaauggcucacugcagccucaaccucccagucgcagaugauccuccuaccucagccuccugaguagccgggaauacaggc	chr1:8667263-8667530(-)$1	267	91	239	236.1311
AUCCuuuuuuuuuuuuuuuugugagacagaguguugcucugucgccaggcuggagugcaguggcgugaucucagcucacugcaaccuccgccuccuggguucaagugauucuccugccucagcuucccgaguagcugggacuacaggc	chr2:63205282-63205499(+)$1	217	50	198	251.6229
UAAuuuuguuuuucuuuuuugagacagagucucccucuuauugcccaggcuggagugcaguggugcaaucgcagcucaccucaaccuccaccuccuggguucaagcgauucuccugccucagccuccugaguagcugggauuacaggc	chr9:99343357-99343624(-)$1	267	92	240	244.9016
aucuuuuuuuuuuuuuuuucugagauaggaugucgcucugucuccgaggcuggaguccaguggugcaaucauagcucacugcagccuugaccuuuuggccugaagugacccuccugccucagccuccugaguagcugggacuacaggc	chr8:22266244-22266514(+)$1	270	86	234	247.5245
uuuuuuuuuuuuuuuuucuugagacaaagucucgcucucaucccccaggcuggagugugauggugugaucucaguucacugcaaccucugcuuccuggguucaagugauccuccugccccagccucccaaguagcugggauuacagga	chr6:16624419-16624684(-)$1	265	82	230	231.2950
Cuuuguuuuuuuuuuuuuuuuugagggggguuucacugugucacccaggcuggagugcaguggcucuaucacaacacacugcagccuugaccuccugggcuuaagcgauccucccaccucagccuuacgaguagcugggaccacaagu	chr12:19288726-19288985(+)$1	259	84	232	232.1147
uguauuuauuuauuuauuuuugagacgcagucuugcucugucaaccaggcuggaaugcaguggugcgaucucggcucacugcaaacucugccuuccugguucaagcgauucuccugccucagccuccugaguagcugggauuacaggc	chr7:76183795-76184029(+)$1	234	68	216	274.6557
uuuuuuuuuuuuuuuuuuuuaaaggcagagucuugcccuguuggccaggcugcagugcaguggccugauaauggcucacugcagcuuccaccucccaggcucaagcaauccucccaccucagccuccugaguagcugggacuacaggu	chr3:58017203-58017443(+)$1	240	72	220	259.9016
Auuuccuuuauuuuuuucuuuuuuugagacagucuggcugucgcccaggcuggagugcaguggugcgaccucggcucacugcaagcuccgccucccggguucacgccauucuccugccucagccucccaaguagcugggacuauaggu	chr16:89479904-89480132(-)$1	228	79	227	250.1475
uuuuuguuuuuguuuuuuuuugaugcagagucucacucugucgccuaggcuggaguacaguggcggaaucucggcucacugcaaccuccaucucccgggcucaagugauuuucaugccuccgcuuccugaguagcugggauuacaggc	chr1:150342169-150342424(+)$1	255	84	232	270.7213
ACuuuuuuuuuuuuuuuuuuugagacagagucucacucugucacccgggcuggagugcaauggugcagucucggcucacugcaaccucugccuccuggauucaagcaauucuccugccucagccucucaaguagcugggauuacaggc	chr3:30694658-30694893(+)$1	235	82	230	288.0983
GAAAuuuuuuuuuuuucucccgagauggagucucgcucugccucccaggcuggagugcaguggcgugaucucggcucacugcaaccuccgccucccggauuuaagcgauucuucugcuucagccucuugaguagcugggacuacaggc	chr3:31861946-31862197(-)$1	251	90	238	265.4754
ucuuuuuuuuuuuuuuccccugagauggaguguugcugugucacccaggcuggcaugcaguggcacgaucuuggcucacugcaaccucugccucccagguucaagcaauucuucugccucagccucccgaguagcuggcauuauaggu	chr3:142750822-142751076(+)$1	254	89	237	258.5901
uguuuuuugguuuuuuuuuuugagacggagucucacucugucgccagucuggagugcuaguggcgcgaucuuggcuuacugcagccuccacuucccaaguucaagcgauucuccugccucagccucccgaguagcugggacuacaggc	chr7:48003353-48003605(-)$1	252	82	230	236.9508
uuuuuuuuuuuuuuugagacggagucuugcucugucucuguugcugaggcuggagugcaguggcacaaucucggcucacugcaagcuccgccuuccggguucgcgccagucuccugccucagccucccgaguagcugggacuacaggc	chr16:31195671-31195922(+)$1	251	90	238	245.8852
uuuuuuuuuuuuuuuuuuuuugaggcugugucucacucugucacccaggcuggaguacaguggugccaucuuggcucaccucagccucgacuucccaggcucaggugauccucccaacucagccucccaaguagcugggaccacaggu	chr12:116533992-116534266(-)$1	274	86	234	257.4426
CCCAUCACCuuuuuuuuuuuuuggacagagucucgcucuguugccuaggcuggagugcaguggcaugaucucggcucacuacaaccucugucucccacauucaggcgaugcuccugccucagccuccugaguagcugggacuacaagu	chr9:134363564-134363800(+)$1	236	83	231	246.2950
GACuuuuuuuuuuuuuuuuuugagauggagucucgcucuguugcccaggcuggagcgcaguggugcgauuuuggcucacugcaaccucugccuccuggguccaagugauucuccugccucagccuccugaguagcugggauuacugcc	chr19:57340558-57340816(-)$1	258	84	232	282.6885
aauggauuuuuuuuuuuuuuuuugacagggucuugcucuguggcccaggcuggagcacaguggugccaucacggcucacugcagccuccauuuccugggcucaagugauccucuugccucagccucccaaguagcugggaccacagaa	chr17:80214237-80214490(-)$1	253	81	229	250.3114
uuuuguuuuguuuuguuuuuagagacaggguugcguucugucgcccaggcuggagugcaguggugcggucucggcucacuucagccuccacugcccaggcucaagcaauccucccaccucagccucccgaguagccgggacuguaggc	chr19:959188-959446(+)$1	258	82	230	248.5901
uuuuuuuuuuuuuuuuggucugagauggagucucacucugucgcccaggcuggaguacgguggugcgaucucgguucacuacaaccuccgcgucccagguucaagugauucuccugccucaggcucccgaguugcugggauuacagac	chr22:50836507-50836756(+)$1	249	90	238	272.4426
ccuggccuuuuuuuuuuuuuugugacaaguuucacucuuguugcccaggcuggagcgcaauggcacgaucucggcucacuacaaccuccgccucccggguucaagugauucuccugccucagccucccuaguagcugggauuacaggc	chr20:3197014-3197261(+)$1	247	82	230	256.9508
ucuuuucuuuuuuuuuuuuuuugagacagagucucgcucugucgccuggcuggagugcaguggcgugaucucagcucacugcaaccuccgcuuccuggguucaagcaauucuccucccucagucuccugaguaccugggauuacaggc	chr11:61133853-61134110(+)$1	257	83	231	236.3770
Guuuuuucuguuuuuguuuuuugagacgaagucucgcucuguugccaggcuggagugcaguggcgugaucucggcucacuguaaccucugccuccugaguucaagcgauucuccugccucagccucccgaguagcugaaacuacaggc	chr8:128968614-128968908(+)$1	294	113	261	239.9836
uuauguuuauuuuuauuuuuugaagcuggguccugcucugucacccaggcuggagggcuguggugugaucucagcucacugcagccucugccucucagguucaagugauucuccugccucagccccccaaguagcugggacuacaggc	chr11:43711018-43711275(+)$1	257	75	223	269.1639
uuuucuuuuuuuuuuuuuuuuuugagauagaguugcucugucgccgagguuggagugcaguggugugaucucagcucacugcaaucuccaccuccuggauucaagcgauucuucugccucagccuuccgaguagcugggauuacagau	chr17:30202687-30202942(-)$1	255	80	228	269.0819
cgAucuuuuuuuuuuuuuuuugagacagagucuuccucuguugcccagccuggaguguaguggugcaaucuuggcucacuguaaccucugccuccuggguucaagugauucucccaccucagccucccgaguagcugggauuacaggc	chr11:718881-719131(+)$1	250	81	229	282.8524
auuuaauuauaauuuuauuuugacauggagccucgcucuguugcccaggcugaaaugcaguggugcauucucggcucacugcaaccucugccucccggguucaagagaaccuugugccucagccucccaagcaacugggauuacaggc	chr13:75888966-75889218(-)$1	252	82	230	241.4590
uuuuuuuuuuuuuuuuugugauggagucucacuuacucuguugcccagguuggagugugguggcacaaccucugcucacggcaaccuccgccucccagguucaagugauucuccugccucagccuccugaguagcugagauuacagac	chr7:92416338-92416604(-)$1	266	88	236	250.3114
gaauuuuuuuuuuuuuuuuuugagacagagucucacucuguugcucaggcuggagugcaguggugcagucucagcacacugcaaccucugccuguugaauucaacugauucuuucaccucagccuccugaguagcucagauaacaggu	chr2:61446639-61446909(-)$1	270	83	231	245.3114
uuuuuuuuuuuuuucuuuugugagauggagucgcucucugucgcccaggcuggagugcaauggaguggucuuggcucacugcaacguccgccucccggauucaagugauucucuugccucagccucccgaguagcugggauuacaggc	chr8:64101182-64101435(+)$1	253	86	234	283.9180
uuuuuuuuuuuuuuuuuuuuugaaacggagucuugcucuguuacccaggcuggcgugcaguggugugaucucugcucacugcagccuccaccucccagguucaagugauucuccugucucagccucccgaguagcugggacuacaggu	chr10:69828093-69828334(-)$1	241	70	218	297.4426
CAUAUACuuuuuuuuuuuuuugagacagagucucgcuccgucacccaggcuagagugcaguggcacaaucuuggcccacugcaaccuccgccuccuggguuuaaaugauuuucgugccucagccucccaaguagcugggauuacaggc	chrX:30742921-30743163(+)$1	242	73	221	267.6065
GGuuuuuuuuuuuguuuuuuugagucagagucucgcuaugucgcccacaguggagugcaguggugugaucucagcucacugcaacucccaucucuugggcucaggugauucucaugccucagccuccugaguagcugggacuacagcc	chr17:60132596-60132855(-)$1	259	84	232	258.0163
uuuuuuuuuuuuuuuuuuuuugaggcaggguguugcucagucacccaggcuagagagcaguggcgccaucucggcucacugcagucucaaaccccugggcucaggcgauccucccaccucagccccccaaguagcugggauuacaggc	chr6:71243935-71244191(+)$1	256	84	232	258.9180
UUAAuuuuuuacuuuuuuuuuguggcagggucucacucuguggcccaggcuggagugcaguggugcaaucuuggcucacugcagccuccaccucccggguucaagcgauucucgugccucagccucccgaguagcugggacuacaggu	chr11:46608782-46609034(-)$1	252	84	232	286.1311
uuauuauuauuauuauuUUGGgagacagaguguggcucugucgcccaggcuggagugcaauggugcaaucucagcucacugcaaccuuugccuuccggguucaagcgauuuuugugccucagccuuccaaguagcugggauuacaggc	chr15:57224691-57224931(+)$1	240	72	220	259.2459
uuuuuuuuuuuuuuugguggggggacgaaaucucacucuugucaccaggcuggagugcaacggugugaucucggcucacugcaaccucugccucccggguucaagcgauucuucugccucagccuccugaguagcugggauuacaggc	chr16:69489230-69489465(+)$1	235	77	225	267.6885
uuuuuuuuuuuuuuuuuuuuuugagacggagucucacucugucgccaggcuggagugcgguggugcgaucucggcucacuacaaccuccacuucccucguucaagcgauucuccugccucggccucucgaguagcugggacuacgggc	chr6:35809460-35809701(-)$1	241	72	220	241.8688
cuuuuuuuuuugggaaggggugcggcggagucuugcucugucgcccaggcuagagugcaguggugcgaucuuggcucacugcaaccuccgccuccuggguucaagcgaguccccugccucagccucccaaguagcugggacuacaggc	chr7:148453345-148453577(+)$1	232	79	227	262.1147
CAuuucuuuuucuuuuuuuuuuugagauggagucuugcugucacucaggcuggagugcagugcugcgaucuuggcucacugcaaccuccgccucccggguucaagugauucuccugccucagccuucugaguagcugggacuacaggc	chr20:44525017-44525235(+)$1	218	51	199	267.0327
uuuuuuuuuuuuuuuuuuuaugugacaguuucucacucucuugcccaggcuggagugcaguggcaugaucacugcucgcugcagccuggaccucgugggcucaggugauccucccaccucagugucugcaguagcuaggacuacaggc	chr12:69209138-69209411(+)$1	273	80	228	237.1147
UGAuuuuuuuauuuuuauuuuuagacagggccuggcucuguugcccaggcuggagugcaguggcacaaccucagcucacugcaaccuccaccuccugggcucaagugauucuccugccucagccuccugaguagcugggauuacaggu	chr14:39845096-39845325(+)$1	229	58	206	282.3606
uuuuucuuuuuuuuuuuauuugagacggagccuugcucugucaccccagcuggaguguaguggugcagucucagcuuacugcaaccuccaccuccuggguucaagcgguucucucacgucagccuccagaguagcugggauuacaggc	chr12:51126597-51126863(+)$1	266	88	236	263.6721
uuuuuuuuuuuuuuuuuuuuuaaagacggagucucacuccauugccaggcuggagggccauggcgcaaucucggcucacugcaaccuccgccuccuggguucaagcgauucuccugccucagccugccgaguagcugggacuacaggu	chr4:73972446-73972698(-)$1	252	82	230	254.0819
uuuuuuuuuuuuuuuuuuuuuuuuuuugagacaguaucucucacccagucuggagugcaacagcguggucuccgcucacugcaaccuccaccucccagauucaaaugauucuugugccucagccuccugaguagcugggacuacaggc	chr7:75155557-75155805(-)$1	248	79	227	248.1803

#otherMatches

#Struct PSSM
zzzzzzzzzzzzz============:GGGGGGG}CCC}CCC::::::bb[eeeeegggggggbb[bbmmmmbbbb]ggggggg22eeeee]bbbb[ggggggg[cccpppppppccc]ggggggg333bb::::EEEEE:::::::::	chr14:55087982-55088233(+)$1	251	82	230	247.4426
gggggg]dddd]bb333ffffff:ggggggglllggggggg:ggggggg[eeeeehhhhhhhh!!bbmmmmbb22hhhhhhhh22eeeee333ggggggg::::HHHHHHHH:::::eeeeemmmmeeeeeffffff[a%%%%%%ccc	chr3:196557672-196557926(+)$1	254	82	230	275.8032
nniiiiiiiii:::::::::fffffflllffffff::ccc%%%%%%dddd[eeeeeggggggg[bbpppppppbbggggggg]eeeee]dddd22cccDDDD?????EEEEEGGGGGGG}FFFFFF:::::::ddddoooooodddd:	chr18:3596070-3596317(+)$1	247	84	232	278.1803
:::::::::::::::::::::::hhhhhhhhlllhhhhhhhhggggggg[eeeeehhhhhhhh!!bbmmmmbb22hhhhhhhh22eeeee333ggggggg:::FFFFFF::::::::a[dddd!!ammmma22dddd]a::::::GGG	chr17:74292712-74292961(-)$1	249	82	230	297.7704
d"""ccc++++++++++++cccffffff[a!!eeeee[bb!!ccc!!bb!!ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd4444bb22ccc]bbeeeee22a]ffffff]ccc22ccc]ddddggggggg666666===	chr6:144674162-144674410(+)$1	248	85	233	277.7704
:::::::::::::::::::::==========nnnnn==========:FFFFFF{CCCKKEEEEEddddllldddd::::bb[eeeeerrrrrrrrreeeeebb:dddd[ccc$$$$$ffffff!!ammmma22ffffff55555ccc]	chr7:29451859-29452121(+)$1	262	85	233	242.0327
d22eeeee]ggggggg]eeeee:hhhhhhhhlllhhhhhhhh::eeeeeffffffhhhhhhhh!!bbmmmmbb22hhhhhhhh22ffffff22eeeee:::::::ggggggg[dddd[ddddmmmmdddddddd22ggggggg::fff	chrX:128640514-128640772(-)$1	258	85	233	282.5245
::::::::::hhhhhhhh!!dddd!!dddd!!eeeee$$$$$ggggggg[eeeeedddd[bbbbrrrrrrrrrbb]bb]dddd22eeeee333ggggggg333eeeee22dddd22dddd22hhhhhhhhFFFFFF:::::::::ddd	chr14:75598950-75599205(-)$1	255	94	242	240.1475
ggg>>>>>>>>>>>>>>>>hhhhhhhh:ccc[ffffff[bb"""eeeee[eeeeegggggggbb[bbmmmmbbbb]ggggggg22eeeee333eeeee333bbffffff]ccc::::gggggggqqqqqqqqggggggg::::::DDD	chr2:63205259-63205482(+)$1	223	73	221	251.6229
:::::::::::::::::::::::hhhhhhhhlllhhhhhhhh::FFFFFF:dddd[ccc!!ccceeeeeqqqqqqqqeeeee]ccc22cccdddd:::::::::cccpppppppcccffffff!!ammmma22ffffff::::::ccc	chr3:30694693-30694918(+)$1	225	47	195	288.0983
======:::::::::::::::::hhhhhhhhlllhhhhhhhh::::ccc[ccc[ccc[eeeee[cccnnnnnccceeeee22ccc]ccc]ccc::ffffff"""cccpppppppccc333ffffff:::::ggggggg&&&&&&&ccc	chr8:16923965-16924230(+)$1	265	83	231	255.5573
:::::::::::::JJJJJJJJJJJJJ::a[ccc[ccc[bbnnnnnbbccc]ccc]aggggggg[cccmmmmccc]ggggggg:JJJJJJJJJJJJJdddd####cccbb[a[dddd[ffffff!!ammmma22ffffff4444dddd]	chr2:63178565-63178841(+)$1	276	91	239	260.3114
:::::::::::::::::::::::ccc[ddddllldddd]ccc::::A}HHHHHHHH?????CCCCCCJJJJJJJJJJ::ccc[eeeeeqqqqqqqqeeeee333ccc::::::::::eeeeemmmmeeeeeJJJJJJJJJJ~~~~CCC	chr2:242237630-242237883(-)$1	253	82	230	268.4262
vvvvvvvvvvdddd::::::::::hhhhhhhhlllhhhhhhhh:::EEEEEddddgggggggbb[bbmmmmbbbb]ggggggg22ddddddddllldddd::::FFFFFF}A}DDDDcccqqqqqqqqccc:ggggggg[a####ddd	chr14:24903538-24903775(+)$1	237	69	217	231.8688
eeeee::::::::::::::::::::GGGGGGG{BBKKDDDD:::::dddd[eeeeeccc[bbbb[bbmmmmbbbb]bb]ccc]eeeee]dddd:::eeeee[eeeeepppppppeeeee]eeeee:::::DDDDYYBBGGGGGGGddd	chr11:46755254-46755514(+)$1	260	81	229	277.1147
h::::::::::::::::::bb[ffffffnnnnnffffff]bbCCCFFFFFF~~~~A}BB}HHHHHHHH::::bb[cccdddd[bbuuuuuuuuuuuubb]dddd]ccc]bb::::::eeeeemmmmeeeeedddd[ccc%%%%%%ccc	chr1:8667263-8667530(-)$1	267	91	239	236.1311
^^^^^^^^^^^^^^^^^^ffffffhhhhhhhhlllhhhhhhhh:eeeee[eeeeegggggggbb[bbmmmmbbbb]ggggggg22eeeee333eeeee::DDDDDDDD?????DDDDcccqqqqqqqqccc::ffffff%%%%%%ccc	chr2:63205282-63205499(+)$1	217	50	198	251.6229
::==========qqqqqqqq==========::::a[ccc"""ggggggg[eeeeebb!!cccacccmmmmccc]a]ccc22bb22eeeee333ggggggg22ccc]a:::::bb[bbeeeeemmmmeeeee22bb]bbCCC}EEEEE}	chr9:99343357-99343624(-)$1	267	92	240	244.9016
ff::::::::::::::::bb[hhhhhhhhppppppphhhhhhhh]bbFFFFFF{BBLLLHHHHHHHH:ccc!!cccooooooccc22ccc:::::::eeeee[ccc!!ccc!!dddd[ddddmmmmdddddddd22cccccc]eeeee	chr8:22266244-22266514(+)$1	270	86	234	247.5245
:::::::::::::::::::fffffflllffffff:::::::bbmmmmbbFFFFFFBB}FFFFFFDDDDZZZEEEEEZZZFFFFFF::::bb$$$$$eeeeennnnneeeee4444bbffffff!!ammmma22ffffff::hhhhhhh	chr6:16624419-16624684(-)$1	265	82	230	231.2950
d22ggggggg::::::::::::::ffffff!!bb[bb%%%%%%ffffff[a[cccgggggggwwwwwwwwwwwwwwggggggg22ccc]a333ffffff4444bb]bb]ffffff::ffffffssssssssssffffff:::::::ee	chr12:19288726-19288985(+)$1	259	84	232	232.1147
mccc22bb::::IIIIIIIIIEEEEEdddd!!eeeee[bb!!ggggggg!!bb!!hhhhhhhh[bbpppppppbbhhhhhhhh7777777bb22gggggggbbeeeee55555ddddeeeeemmmmeeeee:BB}FFFFFF::eeeee	chr7:76183795-76184029(+)$1	234	68	216	274.6557
^^^^^^^^^^^^^^^^^^^^hhhhhhhh::::::::::::::DDDDDDDD}DDDDgggggggcccpppppppccc]ggggggg:::::::::::ggggggg"""ccc!!bbeeeeeaeeeeemmmmeeeee22a]eeeee55555bb4	chr3:58017203-58017443(+)$1	240	72	220	259.9016
b22hhhhhhhh:::::ddddnnnnndddd:bb!!ddddbb!!dddddddd[eeeeeggggggg[bbpppppppbbggggggg22eeeeedddd333dddd]bb]dddd22bbEEEEEZZZEEEEEddddoooooodddd:::::::::	chr16:89479904-89480132(-)$1	228	79	227	250.1475
:::::::::::cccpppppppcccggggggglllggggggg:CCCHHHHHHHH}JJJJJJJJJJccc%%%%%%bbnnnnnbb4444ccc:::ffffffeeeeeddddvvvvvvvvvvvvvdddd333eeeee22ffffff:::::ccc	chr1:150342169-150342424(+)$1	255	84	232	270.7213
:::::::::::::::::::::::hhhhhhhhlllhhhhhhhh:::::CCC:dddd[ccc!!ccceeeeeqqqqqqqqeeeee]ccc22cccddddDDDD@@@@@@@@@@@FFFFFF:ffffff!!ammmma22ffffff::::cccmm	chr3:30694658-30694893(+)$1	235	82	230	288.0983
hhhh:::::::::ddddmmmmdddd:dddd!!eeeee$$$$$ccc[dddd[ddddgggggggbbrrrrrrrrrbb]ggggggg22dddddddd333ccc4444eeeee22dddd:::::dddd!!ammmma22ddddDDDD}DDDD::	chr3:31861946-31862197(-)$1	251	90	238	265.4754
2bb55555eeeee]hhhhhhhh::::dddd[ffffff[bb!!ccc!!bb!!ddddgggggggbb[bbmmmmbbbb]ggggggg55555dddd22bb]ccc]bbffffff]ddddBB}AYYCCCYYBB}HHHHHHHHDDDD}CCCffff	chr3:142750822-142751076(+)$1	254	89	237	258.5901
GGLLLEEEEE:::::::::ccc[hhhhhhhhlllhhhhhhhh22ccc::eeeee[ccceeeee[bbpppppppbbeeeee22ccceeeee::::EEEEEYYGGGGGGG~~~~BBZZZBB}CCC}BBYYCCChhhhhhhh%%%%%%ccc	chr7:48003353-48003605(-)$1	252	82	230	236.9508
:::::::::::::::==========lll==========::::HHHHHHHH{DDDDgggggggbb[aooooooabb]gggggggccc[cccnnnnncccccc:bbmmmmbbDDDD}HHHHHHHH:eeeeeooooooeeeee::::::::	chr16:31195671-31195922(+)$1	251	90	238	245.8852
:::::::::::::::::::::eeeeellleeeeeeeeeecccnnnnnccc]eeeee:::EEEEEddddlllddddffffff[eeeee[annnnna]eeeee]ffffff:::::::::ffffff!!ammmma22ffffffEEEEEffff	chr12:116533992-116534266(-)$1	274	86	234	257.4426
b4444ccc:::::::::::::::hhhhhhhhlllhhhhhhhhBBYYCCC}CCC}DDDD}EEEEE|||||||DDDD}CCCdddd!!bb[ccc[eeeeeaggggggg[a!!cccqqqqqqqqccca]ggggggg]a]eeeee22cccbb2	chr9:134363564-134363800(+)$1	236	83	231	246.2950
=:::::::::::::::::::::::::dddd!!eeeee[bb!!ggggggg[eeeee[ggggggg[bbpppppppbbggggggg333eeeee333ggggggg]bbeeeee22dddd:::eeeeemmmmeeeeehhhhhhhhxxxxxxxxx	chr19:57340558-57340816(-)$1	258	84	232	282.6885
ggggg:::::::::::::::::::ggggggglllggggggghhhhhhhh[eeeeea[ffffff[cccnnnnncccffffff22a]eeeee333hhhhhhhh:::DDDD~~~~DDDD::eeeee!!ammmma22eeeeeFFFFFFEEEE	chr17:80214237-80214490(-)$1	253	81	229	250.3114
xxxxxxxxxxxxxeeeee55555a]==============]bbGGGGGGG{CCC{BB::::ccc[eeeee"""ddddoooooodddd333eeeeecccffffff[bb+++++++++++bbccc!!eeeeeooooooeeeeeccc]bbbb	chr19:959188-959446(+)$1	258	82	230	248.5901
^^^^^^^^^^^^^^^^^^^^^=============]bb]ccc]===========:ddddmmmmdddd::::::ddddooooooddddBB}BB}CCCYYCCCYYJJJJJJJJJJJJJJJJJJJJ}HHHHHHHH}HHHHHHHH::::::::	chr22:50836507-50836756(+)$1	249	90	238	272.4426
hhhh:::::::::::::::::hhhhhhhhppppppphhhhhhhh::EEEEE}CCC}CCCYYDDDD}DDDD}CCC:eeeee!!eeeeerrrrrrrrreeeee22eeeee:::DDDD::ffffff!!ammmma22ffffff::::::ccc	chr20:3197014-3197261(+)$1	247	82	230	256.9508
::::::::::::::::::::::::hhhhhhhhlllhhhhhhhh::::ccc[ddddgggggggbb[bbmmmmbbbb]ggggggg22ddddcccBBYYGGGGGGG}BBffffff$$$$$eeeeemmmmeeeee55555ffffff:A}FFF	chr11:61133853-61134110(+)$1	257	83	231	236.3770
=========::hhhhhhhhmmmmhhhhhhhh::eeeee[bb!!bbdddd[eeeeegggggggbbrrrrrrrrrbb]ggggggg22eeeee333dddd]bb]bbeeeeeIIIIIIIIIYYCCC}EEEEEddddeeeee''''''''ccc	chr8:128968614-128968908(+)$1	294	113	261	239.9836
::::::::::::::::::FFFFFF{EEEEEccc[bb[cccnnnnncccbb]ccc===========[apppppppa]===========::::::EEEEE}FFFFFF::dddd[dddd[ffffffssssssssssffffff4444dddd]	chr11:43711018-43711275(+)$1	257	75	223	269.1639
::::::::::::::::::::::::ccc[iiiiiiiii[bb"""bbeeeee[ddddhhhhhhhh!!bbmmmmbb22hhhhhhhh22ddddeeeee22bb333bbiiiiiiiiiccc::cccqqqqqqqqccchhhhhhhh^^^^^^^^^	chr17:30202687-30202942(-)$1	255	80	228	269.0819
cc!!bb+++++++++++++++++gggggggnnnnnggggggg4444bb22ccc]iiiiiiiii:::::::::ccc[a[ffffff[ccc[bbccc!!eeeee"""cccpppppppccc333eeeee333ccc22bb]ccc]ffffffa]	chr11:718881-719131(+)$1	250	81	229	282.8524
fffpppppppffffff]ddddDDDD{BB{DDDDKKCCC{EEEEEKKGGGGGGG::hhhhhhhh[bbpppppppbbhhhhhhhh::::::bb"""a[ffffffmmmmffffff]a]bb:GGGGGGG?????EEEEE}CCC?????DDDD	chr13:75888966-75889218(-)$1	252	82	230	241.4590
ee>>>>>>>>>>>eeeee]eeeee:DDDD}DDDD}BBDDDD::::::FFFFFF{JJJJJJJJJJ{BBLLLDDDD:dddd"""eeeeerrrrrrrrreeeee333dddd:dddd!!bbeeeeemmmmeeeee22bb]dddd:::DDDDY	chr7:92416338-92416604(-)$1	266	88	236	250.3114
IIIIII:::::::::::::::a[hhhhhhhhlllhhhhhhhh]a:eeeee[ddddggggggg[cccpppppppcccggggggg22ddddeeeee::IIIIIIIIIcccnnnnnccc:::::DDDD:eeeeellleeeee::::::ddd	chr2:61446639-61446909(-)$1	270	83	231	245.3114
ff::::::::::::::::bb[a[gggggggnnnnnggggggg]a]bbEEEEE{BB{DDDD{EEEEE{A{DDDDbbnnnnnbb:::eeeeennnnneeeee:DDDDA}EEEEE}DDDDBBEEEEEeeeeeooooooeeeee:::fffff	chr8:64101182-64101435(+)$1	253	86	234	283.9180
+++++++++++++++++++++a[hhhhhhhhlllhhhhhhhh]affffffccc]eeeee22ffffff::::::::eeeee!!eeeeerrrrrrrrreeeee22eeeee:::::::hhhhhhhh!!ammmma22hhhhhhhh::hhhhh	chr10:69828093-69828334(-)$1	241	70	218	297.4426
:::::::::::::::::::::::ccc[ddddllldddd]cccggggggg"""ccchhhhhhhh!!bbmmmmbb22hhhhhhhh22ccc55555ggggggg:::::::::::::ffffff$$$$$eeeeeooooooeeeee4444ffff	chrX:30742921-30743163(+)$1	242	73	221	267.6065
FFFFFFZZZFFFFFF______EEEEE:ccc!!eeeee[bb!!eeeee[bb[eeeeeggggggg!!bbmmmmbb22ggggggg]eeeee333bb22eeeee]bbeeeee22ccc::::ffffff!!ammmma22ffffff:::::hhhh	chr17:60132596-60132855(-)$1	259	84	232	258.0163
:::::::::::::::::::ffffff!!ccc[ffffff%%%%%%ffffff"""ddddggggggg[cccnnnnncccggggggg22dddd55555ffffff4444ffffff333ccc]ffffff:::::::::hhhhhhhh%%%%%%bbo	chr6:71243935-71244191(+)$1	256	84	232	258.9180
ssssssssssdddd::::::::::ggggggglllgggggggGGGGGGGFFFFFFCCCKKHHHHHHHH:::::ddddoooooodddd::eeeee####eeeee[ccc####dddd[bbmmmmbb4444dddd22ccc]eeeee22eeee	chr11:46608782-46609034(-)$1	252	84	232	286.1311
::::::::::::::::ffffff[hhhhhhhhlllhhhhhhhh]ffffff:CCC{A{CCCKKEEEEEJJJJJJJJJJ{CCCddddllldddd:::::dddd[ddddnnnnndddd]dddd::::::::::CCCJJJJJJJJJJ~~~~EE	chr15:57224691-57224931(+)$1	240	72	220	259.2459
++++++++++++hhhhhhhh[dddd[bbmmmmbb22dddd]hhhhhhhh22dddd]eeeeebb]ccc]hhhhhhhh4444ffffff::::::::::CCC}DDDD::ffffff[dddd[ddddmmmmdddddddd22ffffff:::ddd	chr16:69489230-69489465(+)$1	235	77	225	267.6885
::::::::::::::::::::::::hhhhhhhhlllhhhhhhhhDDDDFFFFFF{CCC{JJJJJJJJJJ{DDDD:::::::::::::::::::::::ddddmmmmdddd:::ddddbbddddoooooodddd22bb]dddd:::DDDD}	chr6:35809460-35809701(-)$1	241	72	220	241.8688
==========eeeee!!bb[bb[cccbb[a[ffffff[bb!!ggggggg"""ccchhhhhhhh[bbpppppppbbhhhhhhhh22ccc55555ggggggg]bbffffff]a]bb]ccc]bb]bbeeeee:ddddoooooodddd::::	chr7:148453345-148453577(+)$1	232	79	227	262.1147
:eeeeezzzzzzzzzzzzzzzzzeeeeedddd!!eeeee"""dddddddd[ddddggggggg!!bbpppppppbb]ggggggg22dddddddd333dddd333eeeee22dddd:::eeeeemmmmeeeee::FFFFFF::::eeeee	chr20:44525017-44525235(+)$1	218	51	199	267.0327
2ccc4444hhhhhhhh]dddd]a]bbeeeee]eeeee:::::::hhhhhhhh[cccgggggggnnnnnggggggg22ccc]hhhhhhhh:::::eeeee"""cccmmmmccceeeee::::bb[ggggggghhhhhhhh!!bb!!bbo	chr12:69209138-69209411(+)$1	273	80	228	237.1147
nnnniiiiiiiii55555ffffffggggggglllggggggg:ggggggg[eeeeegggggggbbrrrrrrrrrbb]ggggggg22eeeee333ggggggg::GGGGGGG::::::::eeeeemmmmeeeeehhhhhhhh####bbddd	chr14:39845096-39845325(+)$1	229	58	206	282.3606
:::::::::::::::::::::::hhhhhhhhlllhhhhhhhh::GGGGGGGdddd[bb[a[ccceeeeeqqqqqqqqeeeee]ccc]a]bbdddd:eeeee"""cccrrrrrrrrrccc]eeeee:::::::GGGGGGG::::::fff	chr12:51126597-51126863(+)$1	266	88	236	263.6721
::::::::::::::::::::::EEEEEeeeeellleeeee:ccc[ggggggg!!dddd"""bb[a[dddd"""ccc"""bb[eeeeerrrrrrrrreeeeebbcccdddda]bb]ddddggggggg]ccc:hhhhhhhh%%%%%%ddd	chr4:73972446-73972698(-)$1	252	82	230	254.0819
::::::::::::::::::::::::::eeeeepppppppeeeee:::GGGGGGGBB:bbmmmmbbdddd$$$$$bbnnnnnbb55555ddddBB}GGGGGGG?????JJJJJJJJJJ:ffffff!!ammmma22ffffff::::hhhhh	chr7:75155557-75155805(-)$1	248	79	227	248.1803

#DB
.............)))))))))))).))))))).))).)))......((.((((((((((((((.((....)))).)))))))..))))).))((.(((((((.(((.......))).)))))))...))....))))).........	chr14:55087982-55088233(+)$1	1	82	230	247.4426
)))))).)))).))...)))))).(((((((...))))))).(((((((.(((((((((((((..((....))..))))))))..)))))...)))))))....)))))))).....(((((....)))))((((((.(......(((	chr3:196557672-196557926(+)$1	1	82	230	275.8032
..))))))))).........((((((...))))))..(((......((((.((((((((((((.((.......))))))))).))))).))))..))))))).....)))))))))))).)))))).......((((......)))).	chr18:3596070-3596317(+)$1	1	84	232	278.1803
.......................((((((((...))))))))(((((((.(((((((((((((..((....))..))))))))..)))))...)))))))...))))))........(.((((..(....)..)))).)......)))	chr17:74292712-74292961(-)$1	1	82	230	297.7704
(...(((............(((((((((.(..(((((.((..(((..((..((((((((((((.((.......))))))))))..))))....))..))).)))))))..).)))))).)))..))).)))))))))))......)))	chr6:144674162-144674410(+)$1	1	85	233	277.7704
.....................((((((((((.....)))))))))).((((((.(((..(((((((((...))))....((.(((((.........))))))).((((.(((.....((((((..(....)..)))))).....))).	chr7:29451859-29452121(+)$1	1	85	233	242.0327
)..))))).))))))).))))).((((((((...))))))))..(((((((((((((((((((..((....))..))))))))..))))))..))))).......(((((((.((((.((((....))))))))..)))))))..(((	chrX:128640514-128640772(-)$1	1	85	233	282.5245
..........((((((((..((((..((((..(((((.....(((((((.(((((((((.((((.........)).)).))))..)))))...)))))))...)))))..))))..))))..)))))))))))))).........(((	chr14:75598950-75599205(-)$1	1	94	242	240.1475
)))................)))))))).(((.((((((.((...(((((.((((((((((((((.((....)))).)))))))..)))))...)))))...)))))))).)))....(((((((........)))))))......)))	chr2:63205259-63205482(+)$1	1	73	221	251.6229
.......................((((((((...))))))))..((((((.((((.(((..((((((((........))))).)))..))))))).........(((.......)))((((((..(....)..))))))......(((	chr3:30694693-30694918(+)$1	1	47	195	288.0983
)))))).................((((((((...))))))))....(((.(((.(((.(((((.(((.....))))))))..))).))).)))..((((((...(((.......)))...)))))).....(((((((.......(((	chr8:16923965-16924230(+)$1	1	83	231	255.5573
.............(((((((((((((..(.(((.(((.((.....))))).))).)(((((((.(((....))).))))))).)))))))))))))((((....(((((.(.((((.((((((..(....)..))))))....)))).	chr2:63178565-63178841(+)$1	1	91	239	260.3114
.......................(((.((((...)))).)))....).)))))))).....)))(((((((((((((..(((.(((((........)))))...)))..........(((((....)))))))))))))))....)))	chr2:242237630-242237883(-)$1	1	82	230	268.4262
..........))))..........((((((((...))))))))...)))))(((((((((((((.((....)))).)))))))..))))((((...))))....)))))).).))))(((........))).(((((((.(....(((	chr14:24903538-24903775(+)$1	1	69	217	231.8688
)))))....................(((((((.((..((((.....((((.((((((((.((((.((....)))).)).))).))))).))))...(((((.(((((.......))))).))))).....))))..)))))))))(((	chr11:46755254-46755514(+)$1	1	81	229	277.1147
)..................((.((((((.....)))))).)))))))))))....).)).))))))))....((.(((((((.((............)).)))).))).))......(((((....)))))((((.(((......(((	chr1:8667263-8667530(-)$1	1	91	239	236.1311
..................))))))((((((((...)))))))).(((((.((((((((((((((.((....)))).)))))))..)))))...)))))..)))))))).....))))(((........)))..((((((......(((	chr2:63205282-63205499(+)$1	1	50	198	251.6229
..((((((((((........))))))))))....(.(((...(((((((.(((((((..(((((((....))).).)))..))..)))))...)))))))..))).).....((.(((((((....)))))..)).))))).))))).	chr9:99343357-99343624(-)$1	1	92	240	244.9016
))................((.((((((((.......)))))))).))((((((.((...((((((((.(((..(((......)))..))).......(((((.(((..(((..((((.((((....))))))))..)))))).)))))	chr8:22266244-22266514(+)$1	1	86	234	247.5245
...................((((((...)))))).......((....)))))))))).))))))))))...)))))...))))))....((.....(((((.....)))))....))((((((..(....)..))))))..(((((((	chr6:16624419-16624684(-)$1	1	82	230	231.2950
)..)))))))..............((((((..((.((......((((((.(.((((((((((..............)))))))..))).)...))))))....)).)).))))))..((((((..........)))))).......((	chr12:19288726-19288985(+)$1	1	84	232	232.1147
.)))..))....))))))))))))))((((..(((((.((..(((((((..((..((((((((.((.......)))))))))).......))..)))))))))))))).....))))(((((....))))).)).))))))..(((((	chr7:76183795-76184029(+)$1	1	68	216	274.6557
....................))))))))..............)))))))).))))((((((((((.......))).)))))))...........(((((((...(((..(((((((((((((....)))))..).))))).....)).	chr3:58017203-58017443(+)$1	1	72	220	259.9016
)..)))))))).....((((.....)))).((..((((((..((((((((.((((((((((((.((.......)))))))))..)))))))))...)))).)).))))..)))))))...)))))((((......)))).........	chr16:89479904-89480132(-)$1	1	79	227	250.1475
...........(((.......)))(((((((...))))))).))))))))))).))))))))))(((......((.....))....)))...(((((((((((((((.............))))...)))))..)))))).....(((	chr1:150342169-150342424(+)$1	1	84	232	270.7213
.......................((((((((...)))))))).....))).((((.(((..((((((((........))))).)))..)))))))))))...........)))))).((((((..(....)..))))))....(((..	chr3:30694658-30694893(+)$1	1	82	230	288.0983
)))).........((((....)))).((((..(((((.....(((.((((.(((((((((((((.........)).)))))))..))))))))...)))....)))))..)))).....((((..(....)..)))))))).))))..	chr3:31861946-31862197(-)$1	1	90	238	265.4754
.)).....))))).))))))))....((((.((((((.((..(((..((..(((((((((((((.((....)))).))))))).....))))..)).))).)))))))).)))))).)..)))..)).)))))))))))).)))((((	chr3:142750822-142751076(+)$1	1	89	237	258.5901
((...(((((.........(((.((((((((...))))))))..)))..(((((.((((((((.((.......)))))))..))))))))....)))))..)))))))....))...)).))).))..)))((((((((......(((	chr7:48003353-48003605(-)$1	1	82	230	236.9508
...............((((((((((...))))))))))....((((((((.(((((((((((((.(......))).)))))))(((.(((.....)))))).((....)))))).)))))))).(((((......)))))........	chr16:31195671-31195922(+)$1	1	90	238	245.8852
.....................(((((...)))))((((((((.....))).)))))...(((((((((...))))((((((.(((((.(.....).))))).)))))).........((((((..(....)..)))))))))))((((	chr12:116533992-116534266(-)$1	1	86	234	257.4426
)....)))...............((((((((...))))))))))..))).))).)))).))))).......)))).)))((((..((.(((.(((((((((((((.(..(((........)))).))))))).).)))))..))))).	chr9:134363564-134363800(+)$1	1	83	231	246.2950
).........................((((..(((((.((..(((((((.(((((.(((((((.((.......)))))))))...)))))...))))))).)))))))..))))...(((((....)))))((((((((.........	chr19:57340558-57340816(-)$1	1	84	232	282.6885
)))))...................(((((((...)))))))((((((((.((((((.((((((.(((.....)))))))))..).)))))...))))))))...))))....))))..(((((..(....)..)))))))))))))))	chr17:80214237-80214490(-)$1	1	81	229	250.3114
.............))))).....).)))))))))))))).))(((((((.(((.((....(((.(((((...((((......))))...))))))))((((((.((...........(((((..(((((......)))))))).))))	chr19:959188-959446(+)$1	1	82	230	248.5901
.....................))))))))))))).)).))).))))))))))).((((....))))......((((......)))))).)).)))..)))..)))))))))))))))))))).)))))))).))))))))........	chr22:50836507-50836756(+)$1	1	90	238	272.4426
)))).................((((((((.......))))))))..))))).))).)))..)))).)))).))).(((((..(((((.........)))))..)))))...))))..((((((..(....)..))))))......(((	chr20:3197014-3197261(+)$1	1	82	230	256.9508
........................((((((((...))))))))....(((.(((((((((((((.((....)))).)))))))..)))))))))..))))))).))((((((.....(((((....))))).....)))))).).)))	chr11:61133853-61134110(+)$1	1	83	231	236.3770
)))))))))..((((((((....))))))))..(((((.((..((((((.((((((((((((((.........)).)))))))..)))))...)))).)).))))))))))))))))..))).)))))(((((((((........(((	chr8:128968614-128968908(+)$1	1	113	261	239.9836
..................((((((.((((((((.((.(((.....))))).)))(((((((((((.(.......).)))))))))))......))))).))))))..((((.((((.((((((..........))))))....)))).	chr11:43711018-43711275(+)$1	1	75	223	269.1639
........................(((.(((((((((.((...(((((((.((((((((((((..((....))..))))))))..)))))))))..))...))))))))))))))..(((........)))((((((((.........	chr17:30202687-30202942(-)$1	1	80	228	269.0819
((..((.................(((((((.....)))))))....))..))).))))))))).........(((.(.((((((.(((.(((((..(((((...(((.......)))...)))))...)))..)).))).))))))).	chr11:718881-719131(+)$1	1	81	229	282.8524
(((.......)))))).))))((((.((.((((..(((.(((((..(((((((..((((((((.((.......))))))))))......((...(.((((((....)))))).).)).))))))).....))))).))).....))))	chr13:75888966-75889218(-)$1	1	82	230	241.4590
))...........))))).))))).)))).)))).))))))......((((((.((((((((((.((...((((.((((...(((((.........)))))...)))).((((..(((((((....)))))..)).))))...)))).	chr7:92416338-92416604(-)$1	1	88	236	250.3114
((((((...............(.((((((((...)))))))).).(((((.(((((((((((.(((.......))))))))))..)))))))))..)))))))))(((.....))).....)))).(((((...)))))......(((	chr2:61446639-61446909(-)$1	1	83	231	245.3114
))................((.(.(((((((.....))))))).).))(((((.((.((((.(((((.(.((((((.....))...(((((.....))))).))))).))))).)))))))))))(((((......)))))...(((((	chr8:64101182-64101435(+)$1	1	86	234	283.9180
.....................(.((((((((...)))))))).)))))))))).)))))..))))))........(((((..(((((.........)))))..))))).......((((((((..(....)..))))))))..(((((	chr10:69828093-69828334(-)$1	1	70	218	297.4426
.......................(((.((((...)))).)))(((((((...(((((((((((..((....))..))))))))..))).....))))))).............((((((.....(((((......)))))....))))	chrX:30742921-30743163(+)$1	1	73	221	267.6065
))))))...))))))......))))).(((..(((((.((..(((((.((.((((((((((((..((....))..))))))).)))))...))..))))).)))))))..)))....((((((..(....)..)))))).....((((	chr17:60132596-60132855(-)$1	1	84	232	258.0163
...................((((((..(((.((((((......((((((...(((((((((((.(((.....))))))))))..)))).....))))))....))))))...))).)))))).........((((((((......((.	chr6:71243935-71244191(+)$1	1	84	232	258.9180
..........))))..........(((((((...))))))))))))))(((((((((..((((((((.....((((......))))..(((((....(((((.(((....((((.((....))....))))..))).)))))..))))	chr11:46608782-46609034(-)$1	1	84	232	286.1311
................((((((.((((((((...)))))))).)))))).(((.(.(((..(((((((((((((((.(((((((...)))).....((((.((((.....)))).))))..........)))))))))))))....))	chr15:57224691-57224931(+)$1	1	72	220	259.2459
............((((((((.((((.((....))..)))).))))))))..)))).))))))).))).))))))))....))))))..........))).))))..((((((.((((.((((....))))))))..))))))...(((	chr16:69489230-69489465(+)$1	1	77	225	267.6885
........................((((((((...))))))))))))((((((.(((.((((((((((.((((.......................((((....))))...((((((((((......))))..)).))))...)))).	chr6:35809460-35809701(-)$1	1	72	220	241.8688
))))))))))(((((..((.((.(((((.(.((((((.((..(((((((...(((((((((((.((.......))))))))))..))).....))))))).)))))))).).)).))).)).))))))).((((......))))....	chr7:148453345-148453577(+)$1	1	79	227	262.1147
.(((((.................)))))((((..(((((...((((((((.(((((((((((..((.......)).)))))))..))))))))...))))...)))))..))))...(((((....)))))..))))))....(((((	chr20:44525017-44525235(+)$1	1	51	199	267.0327
.)))....)))))))).)))).).))))))).))))).......((((((((.((((((((((.....)))))))..))).)))))))).....(((((...(((....))))))))....((.(((((((((((((((..((..((.	chr12:69209138-69209411(+)$1	1	80	228	237.1147
....))))))))).....))))))(((((((...))))))).(((((((.((((((((((((((.........)).)))))))..)))))...)))))))..)))))))........(((((....)))))((((((((....(((((	chr14:39845096-39845325(+)$1	1	58	206	282.3606
.......................((((((((...))))))))..(((((((((((.((.(.((((((((........))))).))).).)))))).(((((...(((.........))).))))).......)))))))......(((	chr12:51126597-51126863(+)$1	1	88	236	263.6721
......................)))))(((((...))))).(((.(((((((..((((...((.(.((((...(((...((.(((((.........))))))))))))))).)).))))))))))).))).((((((((......(((	chr4:73972446-73972698(-)$1	1	82	230	254.0819
..........................(((((.......)))))...(((((((((.((....))((((.....((.....)).....)))))).))))))).....)))))))))).((((((..(....)..))))))....(((((	chr7:75155557-75155805(-)$1	1	79	227	248.1803

#PSSM
u : 0.57	A : 0.09	U : 0.06	C : 0.06	G : 0.06	a : 0.04	c : 0.04	g : 0.03	
u : 0.60	A : 0.09	C : 0.06	U : 0.04	a : 0.04	g : 0.04	c : 0.04	G : 0.03	
u : 0.75	A : 0.08	C : 0.06	a : 0.04	G : 0.01	c : 0.01	U : 0.01	
u : 0.81	A : 0.08	C : 0.03	g : 0.03	c : 0.01	a : 0.01	
u : 0.75	g : 0.11	c : 0.08	U : 0.03	a : 0.01	
u : 0.80	a : 0.06	c : 0.06	g : 0.03	C : 0.01	A : 0.01	
u : 0.90	a : 0.03	c : 0.03	A : 0.01	C : 0.01	
u : 0.93	g : 0.01	a : 0.01	C : 0.01	c : 0.01	
u : 0.90	a : 0.06	g : 0.01	C : 0.01	
u : 0.90	g : 0.06	c : 0.01	a : 0.01	
u : 0.95	a : 0.04	
u : 0.85	a : 0.06	g : 0.04	c : 0.03	
u : 0.93	g : 0.04	a : 0.01	
u : 0.91	g : 0.06	c : 0.01	
u : 0.85	g : 0.06	a : 0.06	c : 0.01	
u : 0.88	g : 0.08	a : 0.03	
u : 0.80	g : 0.11	a : 0.04	c : 0.03	
u : 0.80	g : 0.09	c : 0.04	a : 0.03	U : 0.01	
u : 0.85	g : 0.08	c : 0.03	a : 0.01	U : 0.01	
u : 0.77	g : 0.11	c : 0.08	G : 0.01	a : 0.01	
u : 0.75	g : 0.14	a : 0.06	c : 0.01	G : 0.01	
g : 0.65	u : 0.24	a : 0.08	c : 0.01	
a : 0.59	g : 0.26	u : 0.13	c : 0.01	
g : 0.68	a : 0.21	u : 0.06	c : 0.03	
a : 0.59	g : 0.29	u : 0.08	c : 0.03	
c : 0.55	a : 0.18	u : 0.16	g : 0.09	
a : 0.44	g : 0.31	c : 0.14	u : 0.09	
g : 0.80	a : 0.11	u : 0.04	c : 0.03	
a : 0.55	g : 0.36	u : 0.08	
g : 0.70	a : 0.18	u : 0.06	c : 0.04	
u : 0.68	g : 0.13	c : 0.09	a : 0.08	
c : 0.67	u : 0.21	g : 0.11	
u : 0.73	c : 0.16	g : 0.06	a : 0.03	
c : 0.49	u : 0.40	g : 0.08	a : 0.01	
g : 0.42	a : 0.26	c : 0.18	u : 0.13	
c : 0.77	g : 0.09	u : 0.08	a : 0.04	
u : 0.73	c : 0.22	g : 0.03	
c : 0.72	u : 0.18	g : 0.08	a : 0.01	
u : 0.78	c : 0.19	a : 0.01	
g : 0.77	u : 0.13	a : 0.04	c : 0.04	
u : 0.81	g : 0.13	a : 0.03	c : 0.01	
c : 0.55	u : 0.40	g : 0.03	
g : 0.47	a : 0.29	c : 0.14	u : 0.08	
c : 0.81	g : 0.13	a : 0.03	u : 0.01	
c : 0.93	u : 0.06	
c : 0.88	u : 0.04	g : 0.04	a : 0.01	
a : 0.90	g : 0.06	u : 0.01	c : 0.01	
g : 0.93	c : 0.03	u : 0.01	a : 0.01	
g : 0.93	c : 0.03	a : 0.01	u : 0.01	
c : 0.91	u : 0.04	g : 0.03	
u : 0.95	c : 0.01	a : 0.01	g : 0.01	
g : 0.93	a : 0.06	
g : 0.95	a : 0.03	c : 0.01	
a : 0.93	g : 0.03	c : 0.03	
g : 0.93	a : 0.04	u : 0.01	
u : 0.88	g : 0.04	c : 0.04	a : 0.01	
g : 0.88	a : 0.06	c : 0.03	u : 0.01	
c : 0.91	u : 0.08	
a : 0.90	g : 0.06	u : 0.01	c : 0.01	
g : 0.80	a : 0.19	
u : 0.96	c : 0.03	
g : 0.98	a : 0.01	
g : 0.95	a : 0.03	c : 0.01	
u : 0.50	c : 0.47	a : 0.01	
g : 0.73	a : 0.21	c : 0.03	u : 0.01	
c : 0.60	u : 0.37	g : 0.01	
g : 0.62	a : 0.26	c : 0.08	u : 0.03	
a : 0.86	g : 0.11	u : 0.01	
u : 0.95	c : 0.04	
c : 0.93	u : 0.03	a : 0.03	
u : 0.86	a : 0.11	g : 0.01	
c : 0.75	u : 0.24	
g : 0.57	a : 0.34	u : 0.06	c : 0.01	
g : 0.95	a : 0.03	c : 0.01	
c : 0.96	u : 0.03	
u : 0.95	a : 0.03	c : 0.01	
c : 0.93	g : 0.03	u : 0.03	
a : 0.96	g : 0.03	
c : 1.00	
u : 0.95	c : 0.03	g : 0.01	
g : 0.86	a : 0.08	u : 0.04	
c : 0.96	u : 0.03	
a : 0.98	g : 0.01	
a : 0.78	g : 0.21	
c : 0.90	a : 0.03	g : 0.03	u : 0.03	
c : 0.91	u : 0.06	g : 0.01	
u : 0.98	c : 0.01	
c : 0.88	u : 0.09	g : 0.01	
c : 0.63	u : 0.24	g : 0.06	a : 0.04	
g : 0.55	a : 0.40	c : 0.01	u : 0.01	
c : 0.88	u : 0.09	a : 0.01	
c : 0.83	u : 0.14	g : 0.01	
u : 0.95	c : 0.03	g : 0.01	
c : 0.88	u : 0.08	g : 0.03	
c : 0.91	u : 0.06	g : 0.01	
c : 0.50	u : 0.47	g : 0.01	
g : 0.68	a : 0.27	u : 0.03	
g : 0.91	a : 0.04	c : 0.03	
g : 0.81	a : 0.14	u : 0.01	c : 0.01	
u : 0.77	c : 0.22	
u : 0.96	g : 0.01	c : 0.01	
c : 0.90	g : 0.04	u : 0.04	
a : 0.98	g : 0.01	
a : 0.86	g : 0.09	c : 0.03	
g : 0.90	a : 0.08	c : 0.01	
u : 0.49	c : 0.49	a : 0.01	
g : 0.83	a : 0.13	c : 0.03	
a : 0.98	g : 0.01	
u : 0.93	g : 0.03	c : 0.01	a : 0.01	
u : 0.78	c : 0.19	g : 0.01	
c : 0.95	u : 0.04	
u : 0.95	c : 0.04	
c : 0.85	u : 0.14	
c : 0.77	u : 0.09	g : 0.08	a : 0.04	
u : 0.81	c : 0.18	
g : 0.73	a : 0.24	c : 0.01	
c : 0.96	a : 0.01	u : 0.01	
c : 0.95	u : 0.03	g : 0.01	
u : 0.98	c : 0.01	
c : 1.00	
a : 0.96	c : 0.01	g : 0.01	
g : 1.00	
c : 0.93	u : 0.04	g : 0.01	
c : 0.91	u : 0.06	g : 0.01	
u : 0.96	c : 0.03	
c : 0.91	u : 0.06	g : 0.01	
c : 0.88	u : 0.09	a : 0.01	
c : 0.60	u : 0.36	g : 0.01	a : 0.01	
g : 0.70	a : 0.26	u : 0.01	c : 0.01	
a : 0.96	c : 0.01	u : 0.01	
g : 1.00	
u : 0.96	c : 0.03	
a : 0.98	u : 0.01	
g : 0.96	c : 0.01	a : 0.01	
c : 1.00	
u : 0.96	c : 0.03	
g : 0.96	c : 0.01	a : 0.01	
g : 0.86	a : 0.11	c : 0.01	
g : 0.93	a : 0.04	c : 0.01	
a : 1.00	
c : 0.54	u : 0.42	a : 0.03	
u : 0.91	c : 0.06	a : 0.01	
a : 0.95	u : 0.01	c : 0.01	g : 0.01	
c : 0.90	u : 0.08	a : 0.01	
a : 0.95	g : 0.03	u : 0.01	
g : 0.95	a : 0.04	
g : 0.88	a : 0.06	c : 0.04	
c : 0.72	u : 0.24	a : 0.03	

#score	15853.344262295055
#seq	61
#width	148
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_UTR_m2_run1.nuc.txt

#NT
CCCAGCCC	chr1:22149548-22149773(-)$1	225	1	9	16.2794
CCCAGCCC	chr5:176798930-176799199(+)$1	269	96	104	16.2794
CCCUGCCC	chr11:66373080-66373340(+)$1	260	230	238	19.8088
CCCUUCCC	chr16:315386-315618(+)$1	232	182	190	16.2794
CUCUGCCC	chr3:13358785-13359050(-)$1	265	31	39	15.5441
CCCUCCCC	chr19:13033473-13033725(-)$1	252	11	19	16.3529
CCCAGCCC	chr16:1838600-1838883(+)$1	283	257	265	16.2794
CCCUUCCC	chr19:13264986-13265259(+)$1	273	161	169	16.2794
CCCCGCCC	chr19:38746838-38747105(-)$1	267	30	38	15.7647
CCCUUCCC	chr17:7474849-7475166(+)$1	317	3	11	16.2794
cccucccc	chr15:91504957-91505249(+)$1	292	133	141	16.3529
CCCUACCC	chr17:38613705-38613980(+)$1	275	19	27	15.9117
CCCUGACC	chr19:50372437-50372697(-)$1	260	105	113	15.4705
CCCAGCCC	chr19:56185604-56185856(+)$1	252	130	138	16.2794
CCCUGCCC	chrX:47088033-47088273(+)$1	240	34	42	19.8088
GCCUGCCC	chr2:97541869-97542101(-)$1	232	215	223	15.2499
CCAUGCCC	chr19:41306416-41306667(+)$1	251	31	39	15.2499
CCCUCCCC	chr16:2820926-2821145(+)$1	219	79	87	16.3529
CGCUGCCC	chr11:71949489-71949752(+)$1	263	57	65	15.3970
CCCUGCCC	chr8:21939708-21939997(+)$1	289	140	148	19.8088
CCCUGCCC	chr16:30995300-30995559(+)$1	259	229	237	19.8088
CCCUGCCC	chr19:46893711-46894032(+)$1	321	187	195	19.8088
CCCUUCCC	chr19:40827124-40827389(-)$1	265	10	18	16.2794
CCCUGCCC	chr22:19710476-19710705(+)$1	229	187	195	19.8088
CCCUGACC	chr7:100033923-100034160(-)$1	237	103	111	15.4705
CCCUGCCA	chr19:12811288-12811532(-)$1	244	165	173	15.3970
cccuuccc	chr11:118965534-118965780(-)$1	246	234	242	16.2794
CCCUGCCU	chr16:3071985-3072269(+)$1	284	26	34	15.5441
CCCUGCCU	chr19:59067183-59067393(-)$1	210	44	52	15.5441
CCCUGCCU	chr7:44253577-44253816(+)$1	239	117	125	15.5441
CCCUCCCC	chr16:2821143-2821367(+)$1	224	167	175	16.3529
CCCUCCCC	chr1:33789653-33789897(-)$1	244	220	228	16.3529
CCCUCCCC	chr10:82278510-82278820(+)$1	310	291	299	16.3529
CCCUGCCC	chr5:176910490-176910786(-)$1	296	274	282	19.8088
CCGUGCCC	chr19:11663893-11664167(-)$1	274	71	79	15.1764
CUCUGCCC	chr19:2755618-2755842(-)$1	224	55	63	15.5441
CCCUGGCC	chr17:79991718-79992015(+)$1	297	182	190	15.6176
CCCGGCCC	chr3:13358850-13359088(-)$1	238	15	23	15.9117
GCCUGCCC	chr22:31500134-31500537(+)$1	403	317	325	15.2499
CUCUGCCC	chr1:150533052-150533344(+)$1	292	108	116	15.5441
CCCAGCCC	chr19:1815841-1816106(-)$1	265	190	198	16.2794
CCCUGUCC	chr19:47278112-47278342(-)$1	230	65	73	15.3970
CCCUGCCC	chr19:18054596-18054848(+)$1	252	93	101	19.8088
UCCUGCCC	chr17:7757297-7757607(+)$1	310	169	177	15.1764
CCAUGCCC	chrX:48652446-48652672(+)$1	226	75	83	15.2499
CCCGGCCC	chr16:67978265-67978509(-)$1	244	61	69	15.9117
CCCUGCGC	chr17:7306538-7306811(-)$1	273	192	200	15.2499
CCCAGCCC	chrX:153671019-153671262(+)$1	243	11	19	16.2794
CGCUGCCC	chr19:18545562-18545795(-)$1	233	108	116	15.3970
CCUUGCCC	chr19:17693676-17693933(+)$1	257	22	30	15.1764
CCCUGGCC	chr5:1461574-1461875(-)$1	301	226	234	15.6176
CCCUGCUC	chr19:41930525-41930780(+)$1	255	138	146	15.2499
CCCUGCCC	chr19:896757-897009(-)$1	252	70	78	19.8088
CCCAGCCC	chr16:461789-462070(+)$1	281	177	185	16.2794
CCCUGCCC	chr6:43193435-43193700(-)$1	265	66	74	19.8088
CCCUUCCC	chr17:4800805-4801054(+)$1	249	21	29	16.2794
CCCUGCCC	chr8:145698778-145699031(+)$1	253	7	15	19.8088
CCCUGCUC	chr11:71949779-71950050(+)$1	271	226	234	15.2499
CCCUCCCC	chrX:47518175-47518436(-)$1	261	84	92	16.3529
cccggccc	chr11:64014047-64014303(-)$1	256	199	207	15.9117
CCCAGCCC	chr22:21982563-21982838(-)$1	275	199	207	16.2794
CCCUGCCA	chr19:1577415-1577659(-)$1	244	0	8	15.3970
CCCUGCCU	chrX:153609537-153609772(+)$1	235	174	182	15.5441
CCCUGGCC	chr17:73758706-73759000(-)$1	294	111	119	15.6176
CCCUGCGC	chr19:2324033-2324297(-)$1	264	42	50	15.2499
CCCUGGCC	chr19:18649058-18649268(-)$1	210	129	137	15.6176
CUCUGCCC	chrX:152961323-152961547(+)$1	224	172	180	15.5441

#otherMatches

#Struct PSSM
llbb]eee	chr6:31937058-31937311(+)$1	253	185	193	15.1764
DDD:bb[d	chr1:22149548-22149773(-)$1	225	1	9	16.2794
^^^^^^^^	chr5:176798930-176799199(+)$1	269	96	104	16.2794
}EEEEE::	chr11:66373080-66373340(+)$1	260	230	238	19.8088
333fffff	chr16:315386-315618(+)$1	232	182	190	16.2794
hhhhh:::	chr3:13358785-13359050(-)$1	265	31	39	15.5441
dccc!!ee	chr19:13033473-13033725(-)$1	252	11	19	16.3529
::::BBFF	chr16:1838600-1838883(+)$1	283	257	265	16.2794
fff!!bbd	chr19:13264986-13265259(+)$1	273	161	169	16.2794
FFFFBB{G	chr19:38746838-38747105(-)$1	267	30	38	15.7647
DDLLLDDD	chr17:7474849-7475166(+)$1	317	3	11	16.2794
dd::::::	chr15:91504957-91505249(+)$1	292	133	141	16.3529
EE::::::	chr17:38613705-38613980(+)$1	275	19	27	15.9117
4444ccc5	chr19:50372437-50372697(-)$1	260	105	113	15.4705
eee]dddd	chr19:56185604-56185856(+)$1	252	130	138	16.2794
::FFFFFF	chrX:47088033-47088273(+)$1	240	34	42	19.8088
ddddDDDD	chr2:97541869-97542101(-)$1	232	215	223	15.2499
FFFF{CCC	chr19:41306416-41306667(+)$1	251	31	39	15.2499
========	chr16:2820926-2821145(+)$1	219	79	87	16.3529
eBBGGGGG	chr11:71949489-71949752(+)$1	263	57	65	15.3970
5555ffff	chr8:21939708-21939997(+)$1	289	140	148	19.8088
DFFFFFFY	chr16:30995300-30995559(+)$1	259	229	237	19.8088
ooooccc0	chr19:46893711-46894032(+)$1	321	187	195	19.8088
sssssssf	chr19:40827124-40827389(-)$1	265	10	18	16.2794
HHHHHHHH	chr22:19710476-19710705(+)$1	229	187	195	19.8088
eee[a[gg	chr7:100033923-100034160(-)$1	237	103	111	15.4705
ffffgggg	chr19:12811288-12811532(-)$1	244	165	173	15.3970
A?????EE	chr11:118965534-118965780(-)$1	246	234	242	16.2794
ccc:FFFF	chr16:3071985-3072269(+)$1	284	26	34	15.5441
hhhhhhh2	chr19:59067183-59067393(-)$1	210	44	52	15.5441
==!!dddd	chr7:44253577-44253816(+)$1	239	117	125	15.5441
4eeeee]g	chr16:2821143-2821367(+)$1	224	167	175	16.3529
DDDCCC}E	chr1:33789653-33789897(-)$1	244	220	228	16.3529
::::::::	chr10:82278510-82278820(+)$1	310	291	299	16.3529
EEDDDDDD	chr5:176910490-176910786(-)$1	296	274	282	19.8088
lllccc::	chr19:11663893-11664167(-)$1	274	71	79	15.1764
eeee333f	chr19:2755618-2755842(-)$1	224	55	63	15.5441
ccc22===	chr17:79991718-79992015(+)$1	297	182	190	15.6176
"""ddddl	chr3:13358850-13359088(-)$1	238	15	23	15.9117
^^^^^^^^	chr22:31500134-31500537(+)$1	403	317	325	15.2499
eeee[bbg	chr1:150533052-150533344(+)$1	292	108	116	15.5441
cc22a]ee	chr19:1815841-1816106(-)$1	265	190	198	16.2794
[ccc[hhh	chr19:47278112-47278342(-)$1	230	65	73	15.3970
c[bboooo	chr19:18054596-18054848(+)$1	252	93	101	19.8088
oooobb::	chr17:7757297-7757607(+)$1	310	169	177	15.1764
H:::DDDD	chrX:48652446-48652672(+)$1	226	75	83	15.2499
fff:DDDD	chr16:67978265-67978509(-)$1	244	61	69	15.9117
IIII}EEE	chr17:7306538-7306811(-)$1	273	192	200	15.2499
KHHHHHHH	chrX:153671019-153671262(+)$1	243	11	19	16.2794
wwwwccce	chr19:18545562-18545795(-)$1	233	108	116	15.3970
EEKKBB:d	chr19:17693676-17693933(+)$1	257	22	30	15.1764
dddddddd	chr5:1461574-1461875(-)$1	301	226	234	15.6176
wwwwbb]b	chr19:41930525-41930780(+)$1	255	138	146	15.2499
hh22dddd	chr19:896757-897009(-)$1	252	70	78	19.8088
::DDDD{B	chr16:461789-462070(+)$1	281	177	185	16.2794
====!!dd	chr6:43193435-43193700(-)$1	265	66	74	19.8088
========	chr17:4800805-4801054(+)$1	249	21	29	16.2794
EKKBBLLL	chr8:145698778-145699031(+)$1	253	7	15	19.8088
gg[cccbb	chr11:71949779-71950050(+)$1	271	226	234	15.2499
eeeeeCCC	chrX:47518175-47518436(-)$1	261	84	92	16.3529
CCCddddm	chr11:64014047-64014303(-)$1	256	199	207	15.9117
heeeeenn	chr22:21982563-21982838(-)$1	275	199	207	16.2794
::CCC{BB	chr19:1577415-1577659(-)$1	244	0	8	15.3970
========	chrX:153609537-153609772(+)$1	235	174	182	15.5441
nnndddd3	chr17:73758706-73759000(-)$1	294	111	119	15.6176
d]dddd22	chr19:2324033-2324297(-)$1	264	42	50	15.2499
FFddddmm	chr19:18649058-18649268(-)$1	210	129	137	15.6176
cc!!bbnn	chrX:152961323-152961547(+)$1	224	172	180	15.5441

#DB
..)).)))	chr6:31937058-31937311(+)$1	1	185	193	15.1764
(((.((.(	chr1:22149548-22149773(-)$1	1	1	9	16.2794
........	chr5:176798930-176799199(+)$1	1	96	104	16.2794
.)))))..	chr11:66373080-66373340(+)$1	1	230	238	19.8088
...)))))	chr16:315386-315618(+)$1	1	182	190	16.2794
)))))...	chr3:13358785-13359050(-)$1	1	31	39	15.5441
((((..((	chr19:13033473-13033725(-)$1	1	11	19	16.3529
....))))	chr16:1838600-1838883(+)$1	1	257	265	16.2794
(((..(((	chr19:13264986-13265259(+)$1	1	161	169	16.2794
((((((.(	chr19:38746838-38747105(-)$1	1	30	38	15.7647
((...(((	chr17:7474849-7475166(+)$1	1	3	11	16.2794
))......	chr15:91504957-91505249(+)$1	1	133	141	16.3529
((......	chr17:38613705-38613980(+)$1	1	19	27	15.9117
....))).	chr19:50372437-50372697(-)$1	1	105	113	15.4705
))).))))	chr19:56185604-56185856(+)$1	1	130	138	16.2794
..((((((	chrX:47088033-47088273(+)$1	1	34	42	19.8088
))))))))	chr2:97541869-97542101(-)$1	1	215	223	15.2499
((((.(((	chr19:41306416-41306667(+)$1	1	31	39	15.2499
((((((((	chr16:2820926-2821145(+)$1	1	79	87	16.3529
)(((((((	chr11:71949489-71949752(+)$1	1	57	65	15.3970
....))))	chr8:21939708-21939997(+)$1	1	140	148	19.8088
))))))).	chr16:30995300-30995559(+)$1	1	229	237	19.8088
....))).	chr19:46893711-46894032(+)$1	1	187	195	19.8088
.......)	chr19:40827124-40827389(-)$1	1	10	18	16.2794
))))))))	chr22:19710476-19710705(+)$1	1	187	195	19.8088
(((.(.((	chr7:100033923-100034160(-)$1	1	103	111	15.4705
))))((((	chr19:12811288-12811532(-)$1	1	165	173	15.3970
).....))	chr11:118965534-118965780(-)$1	1	234	242	16.2794
))).((((	chr16:3071985-3072269(+)$1	1	26	34	15.5441
))))))).	chr19:59067183-59067393(-)$1	1	44	52	15.5441
((..((((	chr7:44253577-44253816(+)$1	1	117	125	15.5441
.))))).)	chr16:2821143-2821367(+)$1	1	167	175	16.3529
)))))).)	chr1:33789653-33789897(-)$1	1	220	228	16.3529
........	chr10:82278510-82278820(+)$1	1	291	299	16.3529
))))))))	chr5:176910490-176910786(-)$1	1	274	282	19.8088
...)))..	chr19:11663893-11664167(-)$1	1	71	79	15.1764
))))...)	chr19:2755618-2755842(-)$1	1	55	63	15.5441
)))..)))	chr17:79991718-79992015(+)$1	1	182	190	15.6176
...((((.	chr3:13358850-13359088(-)$1	1	15	23	15.9117
........	chr22:31500134-31500537(+)$1	1	317	325	15.2499
((((.(((	chr1:150533052-150533344(+)$1	1	108	116	15.5441
))..).))	chr19:1815841-1816106(-)$1	1	190	198	16.2794
.(((.(((	chr19:47278112-47278342(-)$1	1	65	73	15.3970
(.((....	chr19:18054596-18054848(+)$1	1	93	101	19.8088
....))..	chr17:7757297-7757607(+)$1	1	169	177	15.1764
)...((((	chrX:48652446-48652672(+)$1	1	75	83	15.2499
))).((((	chr16:67978265-67978509(-)$1	1	61	69	15.9117
)))).)))	chr17:7306538-7306811(-)$1	1	192	200	15.2499
.(((((((	chrX:153671019-153671262(+)$1	1	11	19	16.2794
....)))(	chr19:18545562-18545795(-)$1	1	108	116	15.3970
((..((.(	chr19:17693676-17693933(+)$1	1	22	30	15.1764
))))))))	chr5:1461574-1461875(-)$1	1	226	234	15.6176
....)).)	chr19:41930525-41930780(+)$1	1	138	146	15.2499
))..))))	chr19:896757-897009(-)$1	1	70	78	19.8088
..((((.(	chr16:461789-462070(+)$1	1	177	185	16.2794
((((..((	chr6:43193435-43193700(-)$1	1	66	74	19.8088
))))))))	chr17:4800805-4801054(+)$1	1	21	29	16.2794
(..((...	chr8:145698778-145699031(+)$1	1	7	15	19.8088
((.(((((	chr11:71949779-71950050(+)$1	1	226	234	15.2499
)))))(((	chrX:47518175-47518436(-)$1	1	84	92	16.3529
)))((((.	chr11:64014047-64014303(-)$1	1	199	207	15.9117
)(((((..	chr22:21982563-21982838(-)$1	1	199	207	16.2794
..(((.((	chr19:1577415-1577659(-)$1	1	0	8	15.3970
))))))))	chrX:153609537-153609772(+)$1	1	174	182	15.5441
...)))).	chr17:73758706-73759000(-)$1	1	111	119	15.6176
).))))..	chr19:2324033-2324297(-)$1	1	42	50	15.2499
((((((..	chr19:18649058-18649268(-)$1	1	129	137	15.6176
((..((..	chrX:152961323-152961547(+)$1	1	172	180	15.5441

#PSSM
C : 0.89	c : 0.04	G : 0.02	A : 0.01	U : 0.01	
C : 0.86	U : 0.05	c : 0.04	G : 0.02	
C : 0.89	c : 0.04	A : 0.02	G : 0.01	U : 0.01	
U : 0.79	A : 0.11	u : 0.02	G : 0.02	C : 0.01	g : 0.01	
G : 0.77	C : 0.08	U : 0.07	c : 0.01	A : 0.01	u : 0.01	g : 0.01	
C : 0.85	G : 0.05	c : 0.04	A : 0.02	U : 0.01	
C : 0.89	c : 0.04	G : 0.02	U : 0.02	
C : 0.86	U : 0.05	c : 0.04	A : 0.02	

#score	1117.1470588235281
#seq	68
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_UTR_m3_run2.nuc.txt

#NT
GUgugugugug	chr14:65568958-65569216(-)$1	258	8	19	28.7499
GUGUGUGUGUG	chr17:36884946-36885202(+)$1	256	80	91	28.7499
GCgugugcgug	chr21:36260455-36260740(-)$1	285	84	95	21.2499
GAGUGUGUGUG	chr20:1165102-1165374(-)$1	272	216	227	25.7499
gggugugugug	chr17:76794200-76794467(-)$1	267	22	33	25.8333
CUGUGUGUGUG	chr16:31001571-31001842(-)$1	271	87	98	24.2499
gugugugugug	chr11:45902545-45902820(+)$1	275	28	39	28.7499
gugugggugug	chr12:49330652-49330910(-)$1	258	99	110	24.3333
GGGUGUGGGUG	chr15:68500174-68500409(-)$1	235	9	20	21.6666
GGCUGUGUGUG	chr6:161574545-161574805(-)$1	260	43	54	21.8333
gugugugugug	chr1:42643311-42643563(-)$1	252	85	96	28.7499
gugugugcgug	chr12:56991335-56991551(-)$1	216	198	209	24.6666
gugcgugugug	chr17:7107556-7107842(-)$1	286	67	78	24.1666
GAGUGUGUGUG	chr11:64073965-64074223(+)$1	258	24	35	25.7499
gucugugugug	chr10:94451854-94452078(+)$1	224	43	54	24.7499
GGCUGUGUGUG	chr9:123638015-123638286(-)$1	271	80	91	21.8333
gugugugugug	chr12:48176545-48176765(-)$1	220	147	158	28.7499
GUGUGGGUGUG	chr19:18554253-18554494(-)$1	241	79	90	24.3333
gugugugcgug	chr12:56991254-56991488(-)$1	234	135	146	24.6666
guguguguaug	chr7:129472168-129472452(-)$1	284	109	120	24.4166
GUGUGUGUCUG	chr11:67202650-67202920(+)$1	270	115	126	24.3333
GUGUGUGUGUG	chr3:125075991-125076273(-)$1	282	21	32	28.7499
gugugugugug	chr6:349144-349415(+)$1	271	193	204	28.7499
gugugugugug	chr16:89980757-89981047(+)$1	290	54	65	28.7499
GUGUGAGUGUG	chr9:2017310-2017566(+)$1	256	80	91	24.4166
cugugugugug	chr16:58195268-58195564(-)$1	296	122	133	24.2499
gucugugugug	chr9:138899132-138899379(-)$1	247	9	20	24.7499
GGCUGUGUGUG	chr6:161574683-161574916(-)$1	233	64	75	21.8333
gugugugugug	chr1:27181338-27181577(+)$1	239	3	14	28.7499
GAGUGUGUGUG	chr20:1165039-1165285(-)$1	246	127	138	25.7499
gugugagugug	chr18:72102932-72103213(-)$1	281	98	109	24.4166
gugugugugug	chr16:29679179-29679448(+)$1	269	121	132	28.7499
GUGUGUGUGUG	chr6:34555385-34555649(-)$1	264	59	70	28.7499
GGGUGUGUAUG	chr9:33441303-33441609(-)$1	306	19	30	21.4999
GUCUGUGGGUG	chr19:54024896-54025177(+)$1	281	96	107	20.5833
guguaugugug	chr17:17942662-17942935(+)$1	273	112	123	23.9166
gugggugugug	chr11:47379814-47380062(-)$1	248	4	15	24.2499
GUGUGUGUGUG	chr3:51533783-51534026(-)$1	243	31	42	28.7499
GUGUGAGUGUG	chr17:75496154-75496435(+)$1	281	97	108	24.4166
GAGUGUGUGUG	chr6:161557183-161557431(-)$1	248	87	98	25.7499
gugggugagug	chr19:38800397-38800654(-)$1	257	83	94	20.1666
gugugugugug	chr22:50618323-50618634(+)$1	311	30	41	28.7499
gugugugucug	chr5:1222663-1222923(+)$1	260	9	20	24.3333
gugugugugua	chr11:47379982-47380228(-)$1	246	0	11	23.9166
GUGUGUGUGUG	chr10:73061962-73062179(+)$1	217	161	172	28.7499
gcgugugugug	chr2:37072882-37073160(-)$1	278	109	120	25.3333
GUGUGUGUGUG	chr22:21803435-21803683(+)$1	248	109	120	28.7499
gugugugugug	chr20:61519820-61520134(-)$1	314	117	128	28.7499
gggugugugug	chr17:76794267-76794523(-)$1	256	78	89	25.8333
GUGUGUGAGUG	chr1:22161634-22161907(-)$1	273	82	93	24.6666
GAGUGUGUGUG	chr20:1164941-1165189(-)$1	248	31	42	25.7499
GAGUGUGUGUG	chr17:45760220-45760442(+)$1	222	97	108	25.7499
GGGUGUCUGUG	chr4:16163621-16163886(-)$1	265	1	12	20.9999
CUGUGUGUGUG	chr16:8951856-8952133(-)$1	277	83	94	24.2499
gugugugugug	chr17:75211077-75211337(+)$1	260	67	78	28.7499
GUGAGUGUGUG	chr19:11664159-11664391(-)$1	232	66	77	24.1666
GUGUGUGUGUG	chr6:31619482-31619729(-)$1	247	59	70	28.7499
GAGUGUGUGUG	chr16:67471959-67472204(-)$1	245	184	195	25.7499
gugugugugug	chr11:45903714-45904000(+)$1	286	100	111	28.7499

#otherMatches

#Struct PSSM
ee]ccc::::e	chr3:160219265-160219510(-)$1	245	74	85	20.3333
DCCC{A{CCC{	chr14:65568958-65569216(-)$1	258	8	19	28.7499
hhhhhhnnnnn	chr17:36884946-36885202(+)$1	256	80	91	28.7499
fffhhhhhhhh	chr21:36260455-36260740(-)$1	285	84	95	21.2499
GGGGG?????B	chr20:1165102-1165374(-)$1	272	216	227	25.7499
aooooooa]dd	chr17:76794200-76794467(-)$1	267	22	33	25.8333
ffffff]bb]d	chr16:31001571-31001842(-)$1	271	87	98	24.2499
d[dddd=====	chr11:45902545-45902820(+)$1	275	28	39	28.7499
fff]a]bb333	chr12:49330652-49330910(-)$1	258	99	110	24.3333
JJJ{EEEEE::	chr15:68500174-68500409(-)$1	235	9	20	21.6666
eeapppppppa	chr6:161574545-161574805(-)$1	260	43	54	21.8333
===========	chr1:42643311-42643563(-)$1	252	85	96	28.7499
zzzz=======	chr12:56991335-56991551(-)$1	216	198	209	24.6666
=========mm	chr17:7107556-7107842(-)$1	286	67	78	24.1666
:::::::::::	chr11:64073965-64074223(+)$1	258	24	35	25.7499
tttttttttta	chr10:94451854-94452078(+)$1	224	43	54	24.7499
>>bb]a]iiii	chr9:123638015-123638286(-)$1	271	80	91	21.8333
eeeee[ccc[e	chr12:48176545-48176765(-)$1	220	147	158	28.7499
qqqqqqeeeee	chr19:18554253-18554494(-)$1	241	79	90	24.3333
ccc"""bbggg	chr12:56991254-56991488(-)$1	234	135	146	24.6666
E{ATTTTTTTT	chr7:129472168-129472452(-)$1	284	109	120	24.4166
ggggggg]bbb	chr11:67202650-67202920(+)$1	270	115	126	24.3333
===="""bb[e	chr3:125075991-125076273(-)$1	282	21	32	28.7499
hhhhhh:::::	chr6:349144-349415(+)$1	271	193	204	28.7499
''''''=====	chr16:89980757-89981047(+)$1	290	54	65	28.7499
^^^^^^^^^^^	chr9:2017310-2017566(+)$1	256	80	91	24.4166
eee[dddd!!a	chr16:58195268-58195564(-)$1	296	122	133	24.2499
KKBB{BB{DDD	chr9:138899132-138899379(-)$1	247	9	20	24.7499
hhaffffff]a	chr6:161574683-161574916(-)$1	233	64	75	21.8333
::::::::::g	chr1:27181338-27181577(+)$1	239	3	14	28.7499
))))))))))e	chr20:1165039-1165285(-)$1	246	127	138	25.7499
[bb[ccc[ddd	chr18:72102932-72103213(-)$1	281	98	109	24.4166
===========	chr16:29679179-29679448(+)$1	269	121	132	28.7499
===========	chr6:34555385-34555649(-)$1	264	59	70	28.7499
MMMIIIIIIII	chr9:33441303-33441609(-)$1	306	19	30	21.4999
iiiiiii####	chr19:54024896-54025177(+)$1	281	96	107	20.5833
JJJJJJJJJJJ	chr17:17942662-17942935(+)$1	273	112	123	23.9166
:::::::::::	chr11:47379814-47380062(-)$1	248	4	15	24.2499
{CCCBB{BB{B	chr3:51533783-51534026(-)$1	243	31	42	28.7499
a]dddd]iiii	chr17:75496154-75496435(+)$1	281	97	108	24.4166
[ccc[bb$$$$	chr6:161557183-161557431(-)$1	248	87	98	25.7499
::::::::::d	chr19:38800397-38800654(-)$1	257	83	94	20.1666
{FFFFFF{BB:	chr22:50618323-50618634(+)$1	311	30	41	28.7499
===========	chr5:1222663-1222923(+)$1	260	9	20	24.3333
::CCC{BB{HH	chr11:47379982-47380228(-)$1	246	0	11	23.9166
A}A}DDDD}CC	chr10:73061962-73062179(+)$1	217	161	172	28.7499
==IIIIIIIII	chr2:37072882-37073160(-)$1	278	109	120	25.3333
yyyyybb]===	chr22:21803435-21803683(+)$1	248	109	120	28.7499
{EEEEE{CCC{	chr20:61519820-61520134(-)$1	314	117	128	28.7499
ee]bb::a[ee	chr17:76794267-76794523(-)$1	256	78	89	25.8333
I{BB{A::HHH	chr1:22161634-22161907(-)$1	273	82	93	24.6666
))))))))))e	chr20:1164941-1165189(-)$1	248	31	42	25.7499
ddd[eeeee[b	chr17:45760220-45760442(+)$1	222	97	108	25.7499
CCCNNNNNGGG	chr4:16163621-16163886(-)$1	265	1	12	20.9999
dd666666eee	chr16:8951856-8952133(-)$1	277	83	94	24.2499
gggg:ccc===	chr17:75211077-75211337(+)$1	260	67	78	28.7499
ffffffmmmmf	chr19:11664159-11664391(-)$1	232	66	77	24.1666
]ccc:::::::	chr6:31619482-31619729(-)$1	247	59	70	28.7499
[annnnna]gg	chr16:67471959-67472204(-)$1	245	184	195	25.7499
nnndddd]bb4	chr11:45903714-45904000(+)$1	286	100	111	28.7499

#DB
)).)))....(	chr3:160219265-160219510(-)$1	1	74	85	20.3333
((((.(.(((.	chr14:65568958-65569216(-)$1	1	8	19	28.7499
((((((.....	chr17:36884946-36885202(+)$1	1	80	91	28.7499
(((((((((((	chr21:36260455-36260740(-)$1	1	84	95	21.2499
))))).....)	chr20:1165102-1165374(-)$1	1	216	227	25.7499
(......).))	chr17:76794200-76794467(-)$1	1	22	33	25.8333
)))))).)).)	chr16:31001571-31001842(-)$1	1	87	98	24.2499
(.(((((((((	chr11:45902545-45902820(+)$1	1	28	39	28.7499
))).).))...	chr12:49330652-49330910(-)$1	1	99	110	24.3333
(((.(((((..	chr15:68500174-68500409(-)$1	1	9	20	21.6666
(((.......)	chr6:161574545-161574805(-)$1	1	43	54	21.8333
(((((((((((	chr1:42643311-42643563(-)$1	1	85	96	28.7499
....)))))))	chr12:56991335-56991551(-)$1	1	198	209	24.6666
(((((((((..	chr17:7107556-7107842(-)$1	1	67	78	24.1666
...........	chr11:64073965-64074223(+)$1	1	24	35	25.7499
..........)	chr10:94451854-94452078(+)$1	1	43	54	24.7499
..)).).))))	chr9:123638015-123638286(-)$1	1	80	91	21.8333
(((((.(((.(	chr12:48176545-48176765(-)$1	1	147	158	28.7499
......)))))	chr19:18554253-18554494(-)$1	1	79	90	24.3333
(((...(((((	chr12:56991254-56991488(-)$1	1	135	146	24.6666
(.(........	chr7:129472168-129472452(-)$1	1	109	120	24.4166
))))))).))(	chr11:67202650-67202920(+)$1	1	115	126	24.3333
((((...((.(	chr3:125075991-125076273(-)$1	1	21	32	28.7499
)))))).....	chr6:349144-349415(+)$1	1	193	204	28.7499
......(((((	chr16:89980757-89981047(+)$1	1	54	65	28.7499
...........	chr9:2017310-2017566(+)$1	1	80	91	24.4166
(((.((((..(	chr16:58195268-58195564(-)$1	1	122	133	24.2499
..((.((.(((	chr9:138899132-138899379(-)$1	1	9	20	24.7499
))))))))).)	chr6:161574683-161574916(-)$1	1	64	75	21.8333
..........(	chr1:27181338-27181577(+)$1	1	3	14	28.7499
..........(	chr20:1165039-1165285(-)$1	1	127	138	25.7499
.((.(((.(((	chr18:72102932-72103213(-)$1	1	98	109	24.4166
)))))))))))	chr16:29679179-29679448(+)$1	1	121	132	28.7499
(((((((((((	chr6:34555385-34555649(-)$1	1	59	70	28.7499
...((((((((	chr9:33441303-33441609(-)$1	1	19	30	21.4999
(((((((....	chr19:54024896-54025177(+)$1	1	96	107	20.5833
(((((((((((	chr17:17942662-17942935(+)$1	1	112	123	23.9166
...........	chr11:47379814-47380062(-)$1	1	4	15	24.2499
.(((((.((.(	chr3:51533783-51534026(-)$1	1	31	42	28.7499
).)))).))))	chr17:75496154-75496435(+)$1	1	97	108	24.4166
.(((.((....	chr6:161557183-161557431(-)$1	1	87	98	25.7499
..........(	chr19:38800397-38800654(-)$1	1	83	94	20.1666
.((((((.((.	chr22:50618323-50618634(+)$1	1	30	41	28.7499
(((((((((((	chr5:1222663-1222923(+)$1	1	9	20	24.3333
..(((.((.((	chr11:47379982-47380228(-)$1	1	0	11	23.9166
).).)))).))	chr10:73061962-73062179(+)$1	1	161	172	28.7499
))(((((((((	chr2:37072882-37073160(-)$1	1	109	120	25.3333
.....)).)))	chr22:21803435-21803683(+)$1	1	109	120	28.7499
.(((((.(((.	chr20:61519820-61520134(-)$1	1	117	128	28.7499
)).))..(.((	chr17:76794267-76794523(-)$1	1	78	89	25.8333
(.((.(..(((	chr1:22161634-22161907(-)$1	1	82	93	24.6666
..........(	chr20:1164941-1165189(-)$1	1	31	42	25.7499
(((.(((((.(	chr17:45760220-45760442(+)$1	1	97	108	25.7499
(((.....(((	chr4:16163621-16163886(-)$1	1	1	12	20.9999
))......)))	chr16:8951856-8952133(-)$1	1	83	94	24.2499
)))).((((((	chr17:75211077-75211337(+)$1	1	67	78	28.7499
((((((....)	chr19:11664159-11664391(-)$1	1	66	77	24.1666
.))).......	chr6:31619482-31619729(-)$1	1	59	70	28.7499
.(.....).))	chr16:67471959-67472204(-)$1	1	184	195	25.7499
...)))).)).	chr11:45903714-45904000(+)$1	1	100	111	28.7499

#PSSM
G : 0.49	g : 0.44	C : 0.03	c : 0.01	
u : 0.41	U : 0.30	A : 0.11	G : 0.09	g : 0.03	C : 0.01	c : 0.01	
g : 0.46	G : 0.43	C : 0.06	c : 0.03	
U : 0.48	u : 0.44	g : 0.03	c : 0.01	A : 0.01	
G : 0.49	g : 0.48	a : 0.01	
u : 0.46	U : 0.44	A : 0.03	g : 0.01	G : 0.01	a : 0.01	
g : 0.49	G : 0.48	C : 0.01	
u : 0.43	U : 0.43	c : 0.05	A : 0.03	G : 0.03	a : 0.01	
g : 0.46	G : 0.44	A : 0.03	a : 0.01	C : 0.01	c : 0.01	
U : 0.49	u : 0.49	
G : 0.49	g : 0.48	a : 0.01	

#score	1527.1666666666665
#seq	60
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_transcript_m3_run1.nuc.txt

#NT
GAAG	chr20:60715772-60716012(-)$1	240	25	29	11.9999
GAAG	chr17:79573621-79573929(-)$1	308	92	96	11.9999
GAAG	chr8:48743069-48743339(-)$1	270	65	69	11.9999
GAAG	chr5:138160142-138160537(+)$1	395	132	136	11.9999
GAAG	chr19:50001199-50001403(+)$1	204	59	63	11.9999
GAAG	chr12:53421723-53422016(+)$1	293	102	106	11.9999
GAAG	chr6:33243901-33244144(+)$1	243	84	88	11.9999
GAAG	chr2:242192707-242192971(-)$1	264	83	87	11.9999
GAAG	chr22:36680348-36680618(-)$1	270	19	23	11.9999
GAAG	chr9:15469872-15470092(-)$1	220	114	118	11.9999
GAAG	chrX:53432456-53432705(-)$1	249	103	107	11.9999
GAAG	chr1:27744755-27745025(-)$1	270	7	11	11.9999
GAAG	chr9:100689623-100689860(-)$1	237	120	124	11.9999
GAAG	chr1:226334403-226334622(-)$1	219	114	118	11.9999
GAAG	chr1:156713546-156713769(-)$1	223	16	20	11.9999
GAAG	chr12:6687503-6687777(-)$1	274	64	68	11.9999
GAAG	chr9:100745742-100745957(+)$1	215	73	77	11.9999
GAAG	chr17:1268116-1268406(-)$1	290	70	74	11.9999
GAAG	chr14:102498588-102498797(+)$1	209	24	28	11.9999
GAAG	chr17:40453214-40453470(+)$1	256	93	97	11.9999
GAAG	chr19:49377097-49377361(+)$1	264	71	75	11.9999
GAAG	chr20:39729749-39729972(+)$1	223	142	146	11.9999
GAAG	chr1:28527601-28527983(-)$1	382	1	5	11.9999
GAAG	chr17:39846326-39846541(+)$1	215	12	16	11.9999
gaag	chr1:29475125-29475378(-)$1	253	33	37	11.9999
GAAG	chr1:45981225-45981523(-)$1	298	127	131	11.9999
GAAG	chr14:35264775-35265016(-)$1	241	53	57	11.9999
GAAG	chr12:98937929-98938222(+)$1	293	178	182	11.9999
GAAG	chr7:72891979-72892238(-)$1	259	3	7	11.9999
GAAG	chr3:184042663-184042991(+)$1	328	22	26	11.9999
GAAG	chr14:104120962-104121256(+)$1	294	44	48	11.9999
GAAG	chr5:446164-446497(+)$1	333	158	162	11.9999
gaag	chr19:49657502-49657771(-)$1	269	6	10	11.9999
GAAG	chr4:76580150-76580441(-)$1	291	33	37	11.9999
gaag	chr12:112704864-112705127(+)$1	263	139	143	11.9999
GAAG	chr22:30735018-30735284(-)$1	266	66	70	11.9999
GAAG	chr1:214820404-214820651(+)$1	247	72	76	11.9999
GAAG	chr22:38273862-38274130(+)$1	268	72	76	11.9999
GAAG	chr2:10942624-10942864(-)$1	240	190	194	11.9999
GAAG	chr9:131022957-131023181(-)$1	224	179	183	11.9999
GAAG	chrX:48664914-48665205(+)$1	291	34	38	11.9999
GAAG	chr22:20079032-20079245(+)$1	213	31	35	11.9999
GAAG	chr17:16024370-16024655(-)$1	285	112	116	11.9999
GAAG	chr7:102957233-102957561(-)$1	328	37	41	11.9999
GAAG	chr6:34210388-34210595(+)$1	207	99	103	11.9999
GAAG	chr17:8380256-8380468(-)$1	212	107	111	11.9999
GAAG	chr20:30954085-30954359(+)$1	274	164	168	11.9999
GAAG	chr6:38649687-38649920(-)$1	233	93	97	11.9999
GAAG	chr17:45741424-45741662(+)$1	238	109	113	11.9999
GAAG	chr10:103559935-103560197(-)$1	262	48	52	11.9999
GAAG	chr17:27413441-27413695(-)$1	254	27	31	11.9999
GAAG	chr3:40503511-40503726(+)$1	215	91	95	11.9999
GAAG	chr22:29695586-29695942(+)$1	356	44	48	11.9999
GAAG	chr12:53849605-53849872(+)$1	267	87	91	11.9999
GAAG	chr17:79813346-79813562(-)$1	216	134	138	11.9999
GAAG	chrX:122801916-122802164(-)$1	248	50	54	11.9999
GAAG	chr16:1741815-1742086(+)$1	271	37	41	11.9999
GAAG	chr6:34212518-34212738(+)$1	220	39	43	11.9999
GAAG	chr5:235158-235483(+)$1	325	223	227	11.9999
GAAG	chr3:14225336-14225608(+)$1	272	139	143	11.9999
GAAG	chr5:98215206-98215481(-)$1	275	133	137	11.9999
GAAG	chr17:72200226-72200429(+)$1	203	118	122	11.9999
GAAG	chr19:30503091-30503388(+)$1	297	151	155	11.9999
GAAG	chr16:70432197-70432490(-)$1	293	59	63	11.9999
GAAG	chr11:601500-601801(+)$1	301	43	47	11.9999
gaag	chr6:44218188-44218394(+)$1	206	0	4	11.9999
GAAG	chr17:46928868-46929091(+)$1	223	70	74	11.9999
GAAG	chr2:86386567-86386863(-)$1	296	33	37	11.9999
GAAG	chr19:1106307-1106557(+)$1	250	30	34	11.9999
GAAG	chr1:93306007-93306268(+)$1	261	16	20	11.9999
GAAG	chr19:8531024-8531362(+)$1	338	114	118	11.9999
GAAG	chr15:64791635-64791902(+)$1	267	231	235	11.9999
GAAG	chr2:242202161-242202437(-)$1	276	150	154	11.9999
GAAG	chrX:16887192-16887446(-)$1	254	108	112	11.9999
GAAG	chrX:48837727-48837978(-)$1	251	99	103	11.9999
GAAG	chr1:1480205-1480483(-)$1	278	14	18	11.9999
GAAG	chr7:99697240-99697469(-)$1	229	203	207	11.9999
GAAG	chr16:85704499-85704724(+)$1	225	28	32	11.9999
GAAG	chr19:18423312-18423612(-)$1	300	178	182	11.9999
GAAG	chr18:32919708-32920045(-)$1	337	129	133	11.9999
GAAG	chr9:128104387-128104679(+)$1	292	283	287	11.9999
GAAG	chr1:32505033-32505274(+)$1	241	13	17	11.9999
GAAG	chr3:47770414-47770623(-)$1	209	56	60	11.9999
GAAG	chr12:104340318-104340547(+)$1	229	92	96	11.9999

#otherMatches

#Struct PSSM
C::H	chr5:34929639-34929943(+)$1	304	28	32	11.9999
G:::	chr20:60715772-60716012(-)$1	240	25	29	11.9999
hhhh	chr17:79573621-79573929(-)$1	308	92	96	11.9999
:::h	chr8:48743069-48743339(-)$1	270	65	69	11.9999
qqqq	chr5:138160142-138160537(+)$1	395	132	136	11.9999
meee	chr19:50001199-50001403(+)$1	204	59	63	11.9999
ddoo	chr12:53421723-53422016(+)$1	293	102	106	11.9999
qqqq	chr6:33243901-33244144(+)$1	243	84	88	11.9999
bbqq	chr2:242192707-242192971(-)$1	264	83	87	11.9999
lllg	chr22:36680348-36680618(-)$1	270	19	23	11.9999
^^^^	chr9:15469872-15470092(-)$1	220	114	118	11.9999
eeee	chrX:53432456-53432705(-)$1	249	103	107	11.9999
::::	chr1:27744755-27745025(-)$1	270	7	11	11.9999
IIII	chr9:100689623-100689860(-)$1	237	120	124	11.9999
eee]	chr1:226334403-226334622(-)$1	219	114	118	11.9999
f[dd	chr1:156713546-156713769(-)$1	223	16	20	11.9999
pppp	chr12:6687503-6687777(-)$1	274	64	68	11.9999
>>>>	chr9:100745742-100745957(+)$1	215	73	77	11.9999
eeee	chr17:1268116-1268406(-)$1	290	70	74	11.9999
c:::	chr14:102498588-102498797(+)$1	209	24	28	11.9999
d[bb	chr17:40453214-40453470(+)$1	256	93	97	11.9999
cc++	chr19:49377097-49377361(+)$1	264	71	75	11.9999
wwwd	chr20:39729749-39729972(+)$1	223	142	146	11.9999
JJJJ	chr1:28527601-28527983(-)$1	382	1	5	11.9999
eqqq	chr17:39846326-39846541(+)$1	215	12	16	11.9999
::::	chr1:29475125-29475378(-)$1	253	33	37	11.9999
FFFF	chr1:45981225-45981523(-)$1	298	127	131	11.9999
hhhh	chr14:35264775-35265016(-)$1	241	53	57	11.9999
eeee	chr12:98937929-98938222(+)$1	293	178	182	11.9999
::::	chr7:72891979-72892238(-)$1	259	3	7	11.9999
::::	chr3:184042663-184042991(+)$1	328	22	26	11.9999
qqqq	chr14:104120962-104121256(+)$1	294	44	48	11.9999
hhhh	chr5:446164-446497(+)$1	333	158	162	11.9999
::::	chr19:49657502-49657771(-)$1	269	6	10	11.9999
lccc	chr4:76580150-76580441(-)$1	291	33	37	11.9999
nnbb	chr12:112704864-112705127(+)$1	263	139	143	11.9999
d22e	chr22:30735018-30735284(-)$1	266	66	70	11.9999
cc$$	chr1:214820404-214820651(+)$1	247	72	76	11.9999
eeee	chr22:38273862-38274130(+)$1	268	72	76	11.9999
ffff	chr2:10942624-10942864(-)$1	240	190	194	11.9999
b!!g	chr9:131022957-131023181(-)$1	224	179	183	11.9999
bb!!	chrX:48664914-48665205(+)$1	291	34	38	11.9999
''''	chr22:20079032-20079245(+)$1	213	31	35	11.9999
EE::	chr17:16024370-16024655(-)$1	285	112	116	11.9999
dddd	chr7:102957233-102957561(-)$1	328	37	41	11.9999
e::B	chr6:34210388-34210595(+)$1	207	99	103	11.9999
E{A{	chr17:8380256-8380468(-)$1	212	107	111	11.9999
ffff	chr20:30954085-30954359(+)$1	274	164	168	11.9999
bbdd	chr6:38649687-38649920(-)$1	233	93	97	11.9999
c"""	chr17:45741424-45741662(+)$1	238	109	113	11.9999
e&&&	chr10:103559935-103560197(-)$1	262	48	52	11.9999
::::	chr17:27413441-27413695(-)$1	254	27	31	11.9999
nnnd	chr3:40503511-40503726(+)$1	215	91	95	11.9999
''''	chr22:29695586-29695942(+)$1	356	44	48	11.9999
ccgg	chr12:53849605-53849872(+)$1	267	87	91	11.9999
D:::	chr17:79813346-79813562(-)$1	216	134	138	11.9999
$$$$	chrX:122801916-122802164(-)$1	248	50	54	11.9999
&&&b	chr16:1741815-1742086(+)$1	271	37	41	11.9999
g[bb	chr6:34212518-34212738(+)$1	220	39	43	11.9999
::hh	chr5:235158-235483(+)$1	325	223	227	11.9999
dFFF	chr3:14225336-14225608(+)$1	272	139	143	11.9999
"ccc	chr5:98215206-98215481(-)$1	275	133	137	11.9999
4444	chr17:72200226-72200429(+)$1	203	118	122	11.9999
c"""	chr19:30503091-30503388(+)$1	297	151	155	11.9999
oooe	chr16:70432197-70432490(-)$1	293	59	63	11.9999
dddd	chr11:601500-601801(+)$1	301	43	47	11.9999
:::f	chr6:44218188-44218394(+)$1	206	0	4	11.9999
c444	chr17:46928868-46929091(+)$1	223	70	74	11.9999
hhhh	chr2:86386567-86386863(-)$1	296	33	37	11.9999
d!!d	chr19:1106307-1106557(+)$1	250	30	34	11.9999
ffff	chr1:93306007-93306268(+)$1	261	16	20	11.9999
FFFF	chr19:8531024-8531362(+)$1	338	114	118	11.9999
CZZZ	chr15:64791635-64791902(+)$1	267	231	235	11.9999
iiii	chr2:242202161-242202437(-)$1	276	150	154	11.9999
mmmg	chrX:16887192-16887446(-)$1	254	108	112	11.9999
ZZCC	chrX:48837727-48837978(-)$1	251	99	103	11.9999
:::F	chr1:1480205-1480483(-)$1	278	14	18	11.9999
eeem	chr7:99697240-99697469(-)$1	229	203	207	11.9999
DMMM	chr16:85704499-85704724(+)$1	225	28	32	11.9999
dd::	chr19:18423312-18423612(-)$1	300	178	182	11.9999
bb[f	chr18:32919708-32920045(-)$1	337	129	133	11.9999
GGGG	chr9:128104387-128104679(+)$1	292	283	287	11.9999
NNGG	chr1:32505033-32505274(+)$1	241	13	17	11.9999
eeee	chr3:47770414-47770623(-)$1	209	56	60	11.9999
eeee	chr12:104340318-104340547(+)$1	229	92	96	11.9999

#DB
(..(	chr5:34929639-34929943(+)$1	1	28	32	11.9999
(...	chr20:60715772-60716012(-)$1	1	25	29	11.9999
))))	chr17:79573621-79573929(-)$1	1	92	96	11.9999
...(	chr8:48743069-48743339(-)$1	1	65	69	11.9999
....	chr5:138160142-138160537(+)$1	1	132	136	11.9999
.)))	chr19:50001199-50001403(+)$1	1	59	63	11.9999
((..	chr12:53421723-53422016(+)$1	1	102	106	11.9999
....	chr6:33243901-33244144(+)$1	1	84	88	11.9999
((..	chr2:242192707-242192971(-)$1	1	83	87	11.9999
...)	chr22:36680348-36680618(-)$1	1	19	23	11.9999
....	chr9:15469872-15470092(-)$1	1	114	118	11.9999
))))	chrX:53432456-53432705(-)$1	1	103	107	11.9999
....	chr1:27744755-27745025(-)$1	1	7	11	11.9999
))))	chr9:100689623-100689860(-)$1	1	120	124	11.9999
))).	chr1:226334403-226334622(-)$1	1	114	118	11.9999
(.((	chr1:156713546-156713769(-)$1	1	16	20	11.9999
....	chr12:6687503-6687777(-)$1	1	64	68	11.9999
....	chr9:100745742-100745957(+)$1	1	73	77	11.9999
))))	chr17:1268116-1268406(-)$1	1	70	74	11.9999
)...	chr14:102498588-102498797(+)$1	1	24	28	11.9999
(.((	chr17:40453214-40453470(+)$1	1	93	97	11.9999
((..	chr19:49377097-49377361(+)$1	1	71	75	11.9999
...)	chr20:39729749-39729972(+)$1	1	142	146	11.9999
((((	chr1:28527601-28527983(-)$1	1	1	5	11.9999
(...	chr17:39846326-39846541(+)$1	1	12	16	11.9999
....	chr1:29475125-29475378(-)$1	1	33	37	11.9999
))))	chr1:45981225-45981523(-)$1	1	127	131	11.9999
))))	chr14:35264775-35265016(-)$1	1	53	57	11.9999
((((	chr12:98937929-98938222(+)$1	1	178	182	11.9999
....	chr7:72891979-72892238(-)$1	1	3	7	11.9999
....	chr3:184042663-184042991(+)$1	1	22	26	11.9999
....	chr14:104120962-104121256(+)$1	1	44	48	11.9999
))))	chr5:446164-446497(+)$1	1	158	162	11.9999
....	chr19:49657502-49657771(-)$1	1	6	10	11.9999
.)))	chr4:76580150-76580441(-)$1	1	33	37	11.9999
..))	chr12:112704864-112705127(+)$1	1	139	143	11.9999
)..)	chr22:30735018-30735284(-)$1	1	66	70	11.9999
((..	chr1:214820404-214820651(+)$1	1	72	76	11.9999
))))	chr22:38273862-38274130(+)$1	1	72	76	11.9999
))))	chr2:10942624-10942864(-)$1	1	190	194	11.9999
(..(	chr9:131022957-131023181(-)$1	1	179	183	11.9999
((..	chrX:48664914-48665205(+)$1	1	34	38	11.9999
....	chr22:20079032-20079245(+)$1	1	31	35	11.9999
((..	chr17:16024370-16024655(-)$1	1	112	116	11.9999
((((	chr7:102957233-102957561(-)$1	1	37	41	11.9999
)..(	chr6:34210388-34210595(+)$1	1	99	103	11.9999
(.(.	chr17:8380256-8380468(-)$1	1	107	111	11.9999
((((	chr20:30954085-30954359(+)$1	1	164	168	11.9999
))))	chr6:38649687-38649920(-)$1	1	93	97	11.9999
(...	chr17:45741424-45741662(+)$1	1	109	113	11.9999
(...	chr10:103559935-103560197(-)$1	1	48	52	11.9999
....	chr17:27413441-27413695(-)$1	1	27	31	11.9999
...)	chr3:40503511-40503726(+)$1	1	91	95	11.9999
....	chr22:29695586-29695942(+)$1	1	44	48	11.9999
))))	chr12:53849605-53849872(+)$1	1	87	91	11.9999
(...	chr17:79813346-79813562(-)$1	1	134	138	11.9999
....	chrX:122801916-122802164(-)$1	1	50	54	11.9999
...(	chr16:1741815-1742086(+)$1	1	37	41	11.9999
(.((	chr6:34212518-34212738(+)$1	1	39	43	11.9999
..((	chr5:235158-235483(+)$1	1	223	227	11.9999
))))	chr3:14225336-14225608(+)$1	1	139	143	11.9999
.(((	chr5:98215206-98215481(-)$1	1	133	137	11.9999
....	chr17:72200226-72200429(+)$1	1	118	122	11.9999
(...	chr19:30503091-30503388(+)$1	1	151	155	11.9999
...)	chr16:70432197-70432490(-)$1	1	59	63	11.9999
((((	chr11:601500-601801(+)$1	1	43	47	11.9999
...(	chr6:44218188-44218394(+)$1	1	0	4	11.9999
)...	chr17:46928868-46929091(+)$1	1	70	74	11.9999
))))	chr2:86386567-86386863(-)$1	1	33	37	11.9999
(..(	chr19:1106307-1106557(+)$1	1	30	34	11.9999
((((	chr1:93306007-93306268(+)$1	1	16	20	11.9999
))))	chr19:8531024-8531362(+)$1	1	114	118	11.9999
)...	chr15:64791635-64791902(+)$1	1	231	235	11.9999
))))	chr2:242202161-242202437(-)$1	1	150	154	11.9999
...)	chrX:16887192-16887446(-)$1	1	108	112	11.9999
..))	chrX:48837727-48837978(-)$1	1	99	103	11.9999
...(	chr1:1480205-1480483(-)$1	1	14	18	11.9999
(((.	chr7:99697240-99697469(-)$1	1	203	207	11.9999
(...	chr16:85704499-85704724(+)$1	1	28	32	11.9999
))..	chr19:18423312-18423612(-)$1	1	178	182	11.9999
((.(	chr18:32919708-32920045(-)$1	1	129	133	11.9999
))))	chr9:128104387-128104679(+)$1	1	283	287	11.9999
..((	chr1:32505033-32505274(+)$1	1	13	17	11.9999
((((	chr3:47770414-47770623(-)$1	1	56	60	11.9999
))))	chr12:104340318-104340547(+)$1	1	92	96	11.9999

#PSSM
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	
A : 0.95	a : 0.04	
G : 0.94	g : 0.05	

#score	1019.9999999999998
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_transcript_m3_run1.nuc.txt

#NT
AGC	chr12:120576472-120576722(-)$1	250	47	50	8.9999
AGC	chr5:137903237-137903457(-)$1	220	65	68	8.9999
AGC	chr22:23523994-23524255(+)$1	261	47	50	8.9999
AGC	chr17:57760787-57760996(+)$1	209	151	154	8.9999
AGC	chr2:54856553-54856812(+)$1	259	22	25	8.9999
AGC	chr22:22893255-22893507(-)$1	252	8	11	8.9999
AGC	chr19:18967607-18967856(+)$1	249	165	168	8.9999
AGC	chr1:52344082-52344342(-)$1	260	22	25	8.9999
AGC	chr3:9780892-9781167(+)$1	275	49	52	8.9999
AGC	chr1:247094778-247095129(-)$1	351	0	3	8.9999
AGC	chr10:71151863-71152134(+)$1	271	25	28	8.9999
AGC	chr2:11484088-11484347(-)$1	259	0	3	8.9999
AGC	chr10:71142142-71142362(+)$1	220	66	69	8.9999
AGC	chr3:184021651-184021922(+)$1	271	88	91	8.9999
AGC	chr10:75525501-75525748(+)$1	247	74	77	8.9999
AGC	chr12:116420825-116421136(-)$1	311	48	51	8.9999
AGC	chr1:155932796-155933043(-)$1	247	25	28	8.9999
AGC	chr12:120582347-120582577(-)$1	230	8	11	8.9999
AGC	chr12:133349660-133349957(-)$1	297	90	93	8.9999
AGC	chrX:153589701-153589955(-)$1	254	114	117	8.9999
AGC	chr14:102468848-102469072(+)$1	224	46	49	8.9999
AGC	chr10:71158267-71158502(+)$1	235	57	60	8.9999
AGC	chr9:35700159-35700398(-)$1	239	41	44	8.9999
AGC	chr17:1565177-1565402(-)$1	225	28	31	8.9999
AGC	chrX:53655378-53655616(-)$1	238	6	9	8.9999
AGC	chr3:51533784-51534078(-)$1	294	9	12	8.9999
AGC	chr8:48691526-48691754(-)$1	228	169	172	8.9999
AGC	chrX:153588257-153588470(-)$1	213	20	23	8.9999
AGC	chr17:1577729-1577979(-)$1	250	175	178	8.9999
AGC	chr2:96957059-96957294(-)$1	235	61	64	8.9999
AGC	chr2:109335994-109336232(+)$1	238	26	29	8.9999
AGC	chr1:19451062-19451284(-)$1	222	26	29	8.9999
AGC	chr11:34073188-34073517(+)$1	329	96	99	8.9999
AGC	chr2:96952464-96952675(-)$1	211	108	111	8.9999
AGC	chr2:96948863-96949093(-)$1	230	47	50	8.9999
AGC	chr15:22946868-22947187(+)$1	319	38	41	8.9999
AGC	chr9:139368461-139368725(-)$1	264	18	21	8.9999
AGC	chr7:158449280-158449498(-)$1	218	16	19	8.9999
AGC	chr17:7399233-7399482(+)$1	249	27	30	8.9999
AGC	chr17:7401014-7401247(+)$1	233	192	195	8.9999
AGC	chr12:49432265-49432518(-)$1	253	15	18	8.9999
AGC	chr1:19493477-19493762(-)$1	285	101	104	8.9999
AGC	chr1:214776487-214776733(+)$1	246	2	5	8.9999
AGC	chr7:139044577-139044861(+)$1	284	3	6	8.9999
AGC	chr22:23603440-23603660(+)$1	220	59	62	8.9999
AGC	chr12:112587467-112587737(+)$1	270	107	110	8.9999
AGC	chr22:42032448-42032753(+)$1	305	16	19	8.9999
AGC	chr19:48639202-48639485(-)$1	283	72	75	8.9999
AGC	chr12:64798134-64798387(+)$1	253	16	19	8.9999
AGC	chr12:133384474-133384759(-)$1	285	20	23	8.9999
AGC	chr14:102472370-102472607(+)$1	237	102	105	8.9999
AGC	chr11:14521157-14521387(-)$1	230	4	7	8.9999
AGC	chr3:184039370-184039628(+)$1	258	80	83	8.9999
AGC	chr5:149754801-149755097(+)$1	296	8	11	8.9999
AGC	chr8:48883065-48883294(+)$1	229	18	21	8.9999
AGC	chr17:78318422-78318639(+)$1	217	0	3	8.9999
agc	chr12:124196920-124197193(+)$1	273	5	8	8.9999
AGC	chr15:91016849-91017118(+)$1	269	116	119	8.9999
AGC	chr8:48873590-48873795(+)$1	205	18	21	8.9999
AGC	chr17:57758172-57758377(+)$1	205	111	114	8.9999
AGC	chr1:19481835-19482045(-)$1	210	28	31	8.9999
AGC	chr1:39896336-39896649(+)$1	313	0	3	8.9999
AGC	chr1:12353610-12353862(+)$1	252	19	22	8.9999
AGC	chr11:62299418-62299655(-)$1	237	55	58	8.9999
AGC	chr9:134334525-134334803(+)$1	278	48	51	8.9999
AGC	chr2:96952395-96952625(-)$1	230	58	61	8.9999
AGC	chrX:153582182-153582395(-)$1	213	71	74	8.9999
AGC	chr12:56565384-56565656(-)$1	272	124	127	8.9999
AGC	chr17:78354598-78354837(+)$1	239	79	82	8.9999
AGC	chr1:202709702-202709972(-)$1	270	51	54	8.9999
AGC	chrX:153590524-153590739(-)$1	215	51	54	8.9999
AGC	chrX:39931907-39932145(-)$1	238	19	22	8.9999
AGC	chr17:57743801-57744045(+)$1	244	127	130	8.9999
AGC	chr6:31748756-31748982(-)$1	226	127	130	8.9999
agc	chr1:220219635-220219861(-)$1	226	11	14	8.9999
AGC	chr1:16053716-16054021(+)$1	305	3	6	8.9999
AGC	chr5:154174732-154174966(+)$1	234	15	18	8.9999
AGC	chr8:48839656-48839899(-)$1	243	7	10	8.9999
AGC	chr16:70292823-70293064(-)$1	241	7	10	8.9999
AGC	chr16:70590048-70590326(+)$1	278	40	43	8.9999
AGC	chr16:58565824-58566065(-)$1	241	5	8	8.9999
AGC	chr16:85694776-85695034(+)$1	258	19	22	8.9999
AGC	chr19:30433309-30433659(+)$1	350	251	254	8.9999
AGC	chr14:102446754-102446975(+)$1	221	51	54	8.9999
AGC	chr17:7405742-7405972(+)$1	230	14	17	8.9999
AGC	chr14:102482222-102482465(+)$1	243	40	43	8.9999
AGC	chr8:128750455-128750747(+)$1	292	36	39	8.9999
AGC	chr17:4926671-4926959(+)$1	288	3	6	8.9999
AGC	chr1:160275122-160275336(-)$1	214	82	85	8.9999
AGC	chr17:78343206-78343449(+)$1	243	98	101	8.9999
AGC	chr8:48696203-48696415(-)$1	212	11	14	8.9999
AGC	chr11:62484477-62484719(-)$1	242	36	39	8.9999

#otherMatches

#Struct PSSM
22b	chr12:57037139-57037377(-)$1	238	73	76	8.9999
mcc	chr12:120576472-120576722(-)$1	250	47	50	8.9999
ggg	chr5:137903237-137903457(-)$1	220	65	68	8.9999
cc!	chr22:23523994-23524255(+)$1	261	47	50	8.9999
hh:	chr17:57760787-57760996(+)$1	209	151	154	8.9999
{EE	chr2:54856553-54856812(+)$1	259	22	25	8.9999
!bb	chr22:22893255-22893507(-)$1	252	8	11	8.9999
:dd	chr19:18967607-18967856(+)$1	249	165	168	8.9999
nnf	chr1:52344082-52344342(-)$1	260	22	25	8.9999
ggg	chr3:9780892-9781167(+)$1	275	49	52	8.9999
:bb	chr1:247094778-247095129(-)$1	351	0	3	8.9999
dmm	chr10:71151863-71152134(+)$1	271	25	28	8.9999
:::	chr2:11484088-11484347(-)$1	259	0	3	8.9999
ccc	chr10:71142142-71142362(+)$1	220	66	69	8.9999
fee	chr3:184021651-184021922(+)$1	271	88	91	8.9999
ee#	chr10:75525501-75525748(+)$1	247	74	77	8.9999
mee	chr12:116420825-116421136(-)$1	311	48	51	8.9999
GGL	chr1:155932796-155933043(-)$1	247	25	28	8.9999
III	chr12:120582347-120582577(-)$1	230	8	11	8.9999
]ee	chr12:133349660-133349957(-)$1	297	90	93	8.9999
"bb	chrX:153589701-153589955(-)$1	254	114	117	8.9999
fff	chr14:102468848-102469072(+)$1	224	46	49	8.9999
ddm	chr10:71158267-71158502(+)$1	235	57	60	8.9999
ee2	chr9:35700159-35700398(-)$1	239	41	44	8.9999
mmm	chr17:1565177-1565402(-)$1	225	28	31	8.9999
ddd	chrX:53655378-53655616(-)$1	238	6	9	8.9999
KJJ	chr3:51533784-51534078(-)$1	294	9	12	8.9999
Fff	chr8:48691526-48691754(-)$1	228	169	172	8.9999
KDD	chrX:153588257-153588470(-)$1	213	20	23	8.9999
555	chr17:1577729-1577979(-)$1	250	175	178	8.9999
CCC	chr2:96957059-96957294(-)$1	235	61	64	8.9999
qqq	chr2:109335994-109336232(+)$1	238	26	29	8.9999
eee	chr1:19451062-19451284(-)$1	222	26	29	8.9999
ddl	chr11:34073188-34073517(+)$1	329	96	99	8.9999
EEE	chr2:96952464-96952675(-)$1	211	108	111	8.9999
:::	chr2:96948863-96949093(-)$1	230	47	50	8.9999
2cc	chr15:22946868-22947187(+)$1	319	38	41	8.9999
LCC	chr9:139368461-139368725(-)$1	264	18	21	8.9999
FFF	chr7:158449280-158449498(-)$1	218	16	19	8.9999
qqq	chr17:7399233-7399482(+)$1	249	27	30	8.9999
:GG	chr17:7401014-7401247(+)$1	233	192	195	8.9999
fff	chr12:49432265-49432518(-)$1	253	15	18	8.9999
ddd	chr1:19493477-19493762(-)$1	285	101	104	8.9999
:ff	chr1:214776487-214776733(+)$1	246	2	5	8.9999
ddd	chr7:139044577-139044861(+)$1	284	3	6	8.9999
2cc	chr22:23603440-23603660(+)$1	220	59	62	8.9999
:::	chr12:112587467-112587737(+)$1	270	107	110	8.9999
FFF	chr22:42032448-42032753(+)$1	305	16	19	8.9999
obb	chr19:48639202-48639485(-)$1	283	72	75	8.9999
JJJ	chr12:64798134-64798387(+)$1	253	16	19	8.9999
KBB	chr12:133384474-133384759(-)$1	285	20	23	8.9999
ccc	chr14:102472370-102472607(+)$1	237	102	105	8.9999
[bb	chr11:14521157-14521387(-)$1	230	4	7	8.9999
fff	chr3:184039370-184039628(+)$1	258	80	83	8.9999
ddd	chr5:149754801-149755097(+)$1	296	8	11	8.9999
mbb	chr8:48883065-48883294(+)$1	229	18	21	8.9999
:::	chr17:78318422-78318639(+)$1	217	0	3	8.9999
ccc	chr12:124196920-124197193(+)$1	273	5	8	8.9999
:::	chr15:91016849-91017118(+)$1	269	116	119	8.9999
DD:	chr8:48873590-48873795(+)$1	205	18	21	8.9999
c55	chr17:57758172-57758377(+)$1	205	111	114	8.9999
iii	chr1:19481835-19482045(-)$1	210	28	31	8.9999
::B	chr1:39896336-39896649(+)$1	313	0	3	8.9999
:dd	chr1:12353610-12353862(+)$1	252	19	22	8.9999
:::	chr11:62299418-62299655(-)$1	237	55	58	8.9999
fff	chr9:134334525-134334803(+)$1	278	48	51	8.9999
NNN	chr2:96952395-96952625(-)$1	230	58	61	8.9999
ddb	chrX:153582182-153582395(-)$1	213	71	74	8.9999
ddd	chr12:56565384-56565656(-)$1	272	124	127	8.9999
ggg	chr17:78354598-78354837(+)$1	239	79	82	8.9999
ddd	chr1:202709702-202709972(-)$1	270	51	54	8.9999
[bb	chrX:153590524-153590739(-)$1	215	51	54	8.9999
:cc	chrX:39931907-39932145(-)$1	238	19	22	8.9999
ggg	chr17:57743801-57744045(+)$1	244	127	130	8.9999
e##	chr6:31748756-31748982(-)$1	226	127	130	8.9999
ccc	chr1:220219635-220219861(-)$1	226	11	14	8.9999
:::	chr1:16053716-16054021(+)$1	305	3	6	8.9999
ooo	chr5:154174732-154174966(+)$1	234	15	18	8.9999
[dd	chr8:48839656-48839899(-)$1	243	7	10	8.9999
:::	chr16:70292823-70293064(-)$1	241	7	10	8.9999
:cc	chr16:70590048-70590326(+)$1	278	40	43	8.9999
eee	chr16:58565824-58566065(-)$1	241	5	8	8.9999
{BB	chr16:85694776-85695034(+)$1	258	19	22	8.9999
!bb	chr19:30433309-30433659(+)$1	350	251	254	8.9999
iii	chr14:102446754-102446975(+)$1	221	51	54	8.9999
c[f	chr17:7405742-7405972(+)$1	230	14	17	8.9999
eee	chr14:102482222-102482465(+)$1	243	40	43	8.9999
nnn	chr8:128750455-128750747(+)$1	292	36	39	8.9999
EEE	chr17:4926671-4926959(+)$1	288	3	6	8.9999
888	chr1:160275122-160275336(-)$1	214	82	85	8.9999
ggg	chr17:78343206-78343449(+)$1	243	98	101	8.9999
hhh	chr8:48696203-48696415(-)$1	212	11	14	8.9999
%cc	chr11:62484477-62484719(-)$1	242	36	39	8.9999

#DB
..)	chr12:57037139-57037377(-)$1	1	73	76	8.9999
.))	chr12:120576472-120576722(-)$1	1	47	50	8.9999
(((	chr5:137903237-137903457(-)$1	1	65	68	8.9999
((.	chr22:23523994-23524255(+)$1	1	47	50	8.9999
)).	chr17:57760787-57760996(+)$1	1	151	154	8.9999
.((	chr2:54856553-54856812(+)$1	1	22	25	8.9999
.((	chr22:22893255-22893507(-)$1	1	8	11	8.9999
.((	chr19:18967607-18967856(+)$1	1	165	168	8.9999
..)	chr1:52344082-52344342(-)$1	1	22	25	8.9999
)))	chr3:9780892-9781167(+)$1	1	49	52	8.9999
.((	chr1:247094778-247095129(-)$1	1	0	3	8.9999
(..	chr10:71151863-71152134(+)$1	1	25	28	8.9999
...	chr2:11484088-11484347(-)$1	1	0	3	8.9999
)))	chr10:71142142-71142362(+)$1	1	66	69	8.9999
)))	chr3:184021651-184021922(+)$1	1	88	91	8.9999
((.	chr10:75525501-75525748(+)$1	1	74	77	8.9999
.))	chr12:116420825-116421136(-)$1	1	48	51	8.9999
((.	chr1:155932796-155933043(-)$1	1	25	28	8.9999
(((	chr12:120582347-120582577(-)$1	1	8	11	8.9999
.))	chr12:133349660-133349957(-)$1	1	90	93	8.9999
.((	chrX:153589701-153589955(-)$1	1	114	117	8.9999
(((	chr14:102468848-102469072(+)$1	1	46	49	8.9999
((.	chr10:71158267-71158502(+)$1	1	57	60	8.9999
)).	chr9:35700159-35700398(-)$1	1	41	44	8.9999
...	chr17:1565177-1565402(-)$1	1	28	31	8.9999
(((	chrX:53655378-53655616(-)$1	1	6	9	8.9999
.((	chr3:51533784-51534078(-)$1	1	9	12	8.9999
)((	chr8:48691526-48691754(-)$1	1	169	172	8.9999
.((	chrX:153588257-153588470(-)$1	1	20	23	8.9999
...	chr17:1577729-1577979(-)$1	1	175	178	8.9999
(((	chr2:96957059-96957294(-)$1	1	61	64	8.9999
...	chr2:109335994-109336232(+)$1	1	26	29	8.9999
(((	chr1:19451062-19451284(-)$1	1	26	29	8.9999
((.	chr11:34073188-34073517(+)$1	1	96	99	8.9999
)))	chr2:96952464-96952675(-)$1	1	108	111	8.9999
...	chr2:96948863-96949093(-)$1	1	47	50	8.9999
.))	chr15:22946868-22947187(+)$1	1	38	41	8.9999
.((	chr9:139368461-139368725(-)$1	1	18	21	8.9999
(((	chr7:158449280-158449498(-)$1	1	16	19	8.9999
...	chr17:7399233-7399482(+)$1	1	27	30	8.9999
.))	chr17:7401014-7401247(+)$1	1	192	195	8.9999
)))	chr12:49432265-49432518(-)$1	1	15	18	8.9999
)))	chr1:19493477-19493762(-)$1	1	101	104	8.9999
.((	chr1:214776487-214776733(+)$1	1	2	5	8.9999
(((	chr7:139044577-139044861(+)$1	1	3	6	8.9999
.))	chr22:23603440-23603660(+)$1	1	59	62	8.9999
...	chr12:112587467-112587737(+)$1	1	107	110	8.9999
(((	chr22:42032448-42032753(+)$1	1	16	19	8.9999
.))	chr19:48639202-48639485(-)$1	1	72	75	8.9999
(((	chr12:64798134-64798387(+)$1	1	16	19	8.9999
.((	chr12:133384474-133384759(-)$1	1	20	23	8.9999
)))	chr14:102472370-102472607(+)$1	1	102	105	8.9999
.((	chr11:14521157-14521387(-)$1	1	4	7	8.9999
)))	chr3:184039370-184039628(+)$1	1	80	83	8.9999
(((	chr5:149754801-149755097(+)$1	1	8	11	8.9999
.))	chr8:48883065-48883294(+)$1	1	18	21	8.9999
...	chr17:78318422-78318639(+)$1	1	0	3	8.9999
(((	chr12:124196920-124197193(+)$1	1	5	8	8.9999
...	chr15:91016849-91017118(+)$1	1	116	119	8.9999
((.	chr8:48873590-48873795(+)$1	1	18	21	8.9999
)..	chr17:57758172-57758377(+)$1	1	111	114	8.9999
)))	chr1:19481835-19482045(-)$1	1	28	31	8.9999
..(	chr1:39896336-39896649(+)$1	1	0	3	8.9999
.((	chr1:12353610-12353862(+)$1	1	19	22	8.9999
...	chr11:62299418-62299655(-)$1	1	55	58	8.9999
(((	chr9:134334525-134334803(+)$1	1	48	51	8.9999
...	chr2:96952395-96952625(-)$1	1	58	61	8.9999
(((	chrX:153582182-153582395(-)$1	1	71	74	8.9999
)))	chr12:56565384-56565656(-)$1	1	124	127	8.9999
(((	chr17:78354598-78354837(+)$1	1	79	82	8.9999
(((	chr1:202709702-202709972(-)$1	1	51	54	8.9999
.((	chrX:153590524-153590739(-)$1	1	51	54	8.9999
.((	chrX:39931907-39932145(-)$1	1	19	22	8.9999
)))	chr17:57743801-57744045(+)$1	1	127	130	8.9999
(..	chr6:31748756-31748982(-)$1	1	127	130	8.9999
(((	chr1:220219635-220219861(-)$1	1	11	14	8.9999
...	chr1:16053716-16054021(+)$1	1	3	6	8.9999
...	chr5:154174732-154174966(+)$1	1	15	18	8.9999
.((	chr8:48839656-48839899(-)$1	1	7	10	8.9999
...	chr16:70292823-70293064(-)$1	1	7	10	8.9999
.((	chr16:70590048-70590326(+)$1	1	40	43	8.9999
(((	chr16:58565824-58566065(-)$1	1	5	8	8.9999
.((	chr16:85694776-85695034(+)$1	1	19	22	8.9999
.((	chr19:30433309-30433659(+)$1	1	251	254	8.9999
(((	chr14:102446754-102446975(+)$1	1	51	54	8.9999
(.(	chr17:7405742-7405972(+)$1	1	14	17	8.9999
(((	chr14:102482222-102482465(+)$1	1	40	43	8.9999
...	chr8:128750455-128750747(+)$1	1	36	39	8.9999
(((	chr17:4926671-4926959(+)$1	1	3	6	8.9999
...	chr1:160275122-160275336(-)$1	1	82	85	8.9999
)))	chr17:78343206-78343449(+)$1	1	98	101	8.9999
(((	chr8:48696203-48696415(-)$1	1	11	14	8.9999
.((	chr11:62484477-62484719(-)$1	1	36	39	8.9999

#PSSM
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	

#score	836.9999999999999
#seq	93
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_transcript_m3_run2.nuc.txt

#NT
CUGC	chr7:99691092-99691296(-)$1	204	71	75	12.0000
CUGC	chr2:32582676-32582932(+)$1	256	61	65	12.0000
CUGC	chr17:79972740-79972978(+)$1	238	166	170	12.0000
CUGC	chr11:64658896-64659113(-)$1	217	162	166	12.0000
CUGC	chr17:79957114-79957342(+)$1	228	33	37	12.0000
CUGC	chr11:843716-843957(+)$1	241	127	131	12.0000
CUGC	chr20:3897926-3898145(+)$1	219	97	101	12.0000
CUGC	chr20:61598047-61598305(+)$1	258	100	104	12.0000
CUGC	chr9:97848077-97848304(+)$1	227	152	156	12.0000
CUGC	chr2:54856728-54856971(+)$1	243	60	64	12.0000
CUGC	chr17:19247344-19247614(-)$1	270	74	78	12.0000
CUGC	chr8:144676420-144676665(-)$1	245	53	57	12.0000
CUGC	chr1:41222897-41223132(+)$1	235	137	141	12.0000
CUGC	chr9:97847407-97847623(+)$1	216	77	81	12.0000
CUGC	chr22:20073745-20073984(+)$1	239	48	52	12.0000
cugc	chrX:151126245-151126480(-)$1	235	168	172	12.0000
CUGC	chr11:64658965-64659221(-)$1	256	59	63	12.0000
CUGC	chr20:62588893-62589132(-)$1	239	32	36	12.0000
CUGC	chr8:144677969-144678250(-)$1	281	188	192	12.0000
CUGC	chr1:1241161-1241422(-)$1	261	156	160	12.0000
CUGC	chr12:58218108-58218387(-)$1	279	178	182	12.0000
CUGC	chr12:62997066-62997288(+)$1	222	33	37	12.0000
CUGC	chr22:42296689-42296906(+)$1	217	24	28	12.0000
CUGC	chr17:79961687-79961934(+)$1	247	24	28	12.0000
CUGC	chr11:2156242-2156510(-)$1	268	94	98	12.0000
CUGC	chr9:96938201-96938412(+)$1	211	132	136	12.0000
CUGC	chr16:2321953-2322215(+)$1	262	134	138	12.0000
CUGC	chr16:14401775-14402009(+)$1	234	199	203	12.0000
CUGC	chr3:38010418-38010652(+)$1	234	26	30	12.0000
CUGC	chr12:58218984-58219223(-)$1	239	41	45	12.0000
CUGC	chr22:42298609-42298839(+)$1	230	34	38	12.0000
cugc	chr16:14403415-14403650(+)$1	235	228	232	12.0000
CUGC	chr16:70696327-70696570(-)$1	243	127	131	12.0000
CUGC	chr22:42296900-42297110(+)$1	210	120	124	12.0000
CUGC	chr9:97847385-97847602(+)$1	217	99	103	12.0000
CUGC	chr2:136422846-136423088(+)$1	242	195	199	12.0000
CUGC	chr16:21531435-21531717(-)$1	282	166	170	12.0000
CUGC	chr16:14396140-14396364(+)$1	224	2	6	12.0000
CUGC	chr22:41487787-41488063(+)$1	276	87	91	12.0000
CUGC	chr17:57918485-57918697(+)$1	212	82	86	12.0000
cugc	chr22:24497891-24498112(+)$1	221	25	29	12.0000
CUGC	chr20:4667469-4667732(+)$1	263	8	12	12.0000
CUGC	chr7:150935603-150935845(+)$1	242	32	36	12.0000
CUGC	chrX:73438178-73438425(-)$1	247	199	203	12.0000
CUGC	chr11:75046135-75046383(-)$1	248	42	46	12.0000
CUGC	chr12:1800544-1800814(+)$1	270	118	122	12.0000
CUGC	chr4:128982552-128982819(+)$1	267	25	29	12.0000
CUGC	chr2:196522006-196522374(+)$1	368	64	68	12.0000
cugc	chr9:127044369-127044642(+)$1	273	119	123	12.0000
CUGC	chr11:75046684-75046912(-)$1	228	208	212	12.0000
CUGC	chr16:89971820-89972084(+)$1	264	83	87	12.0000
CUGC	chr17:11985168-11985404(+)$1	236	1	5	12.0000
CUGC	chr9:140349831-140350093(-)$1	262	129	133	12.0000
CUGC	chr22:22007616-22007871(+)$1	255	62	66	12.0000
CUGC	chr16:89267005-89267272(-)$1	267	53	57	12.0000
CUGC	chr11:57408651-57408884(+)$1	233	18	22	12.0000
CUGC	chr14:23426056-23426318(-)$1	262	59	63	12.0000
CUGC	chr1:1102421-1102656(+)$1	235	123	127	12.0000
CUGC	chr22:24494727-24494961(+)$1	234	215	219	12.0000
CUGC	chr16:75278083-75278353(-)$1	270	54	58	12.0000
cugc	chr3:38010235-38010490(+)$1	255	25	29	12.0000
CUGC	chr1:90308863-90309141(+)$1	278	57	61	12.0000
CUGC	chr22:22007190-22007415(+)$1	225	6	10	12.0000
CUGC	chr7:99691007-99691247(-)$1	240	22	26	12.0000
cugc	chr16:2319026-2319254(+)$1	228	154	158	12.0000
CUGC	chrX:85158496-85158740(-)$1	244	112	116	12.0000
CUGC	chr7:1062844-1063119(-)$1	275	250	254	12.0000
CUGC	chr1:205417407-205417652(-)$1	245	109	113	12.0000
CUGC	chr3:49057962-49058190(-)$1	228	106	110	12.0000
CUGC	chr5:179045617-179045837(-)$1	220	180	184	12.0000
CUGC	chr12:62996677-62996969(+)$1	292	153	157	12.0000
CUGC	chr2:74587287-74587540(-)$1	253	15	19	12.0000
CUGC	chrX:53583251-53583504(-)$1	253	22	26	12.0000
CUGC	chr22:42296854-42297074(+)$1	220	13	17	12.0000
CUGC	chr22:20073439-20073660(+)$1	221	134	138	12.0000
CUGC	chr9:97848200-97848433(+)$1	233	29	33	12.0000
CUGC	chr17:57215045-57215278(-)$1	233	23	27	12.0000
CUGC	chr2:219267131-219267365(+)$1	234	33	37	12.0000
CUGC	chr12:62996872-62997155(+)$1	283	181	185	12.0000
CUGC	chr22:20074299-20074546(+)$1	247	123	127	12.0000
CUGC	chr2:61405213-61405439(+)$1	226	86	90	12.0000
CUGC	chr11:779010-779281(+)$1	271	162	166	12.0000

#otherMatches

#Struct PSSM
BB{A	chr3:49057852-49058091(-)$1	239	7	11	12.0000
eeee	chr7:99691092-99691296(-)$1	204	71	75	12.0000
DDKK	chr2:32582676-32582932(+)$1	256	61	65	12.0000
3bbc	chr17:79972740-79972978(+)$1	238	166	170	12.0000
hhhh	chr11:64658896-64659113(-)$1	217	162	166	12.0000
JJdd	chr17:79957114-79957342(+)$1	228	33	37	12.0000
cchh	chr11:843716-843957(+)$1	241	127	131	12.0000
eeee	chr20:3897926-3898145(+)$1	219	97	101	12.0000
::GG	chr20:61598047-61598305(+)$1	258	100	104	12.0000
eeee	chr9:97848077-97848304(+)$1	227	152	156	12.0000
dddd	chr2:54856728-54856971(+)$1	243	60	64	12.0000
DDDK	chr17:19247344-19247614(-)$1	270	74	78	12.0000
llee	chr8:144676420-144676665(-)$1	245	53	57	12.0000
eeee	chr1:41222897-41223132(+)$1	235	137	141	12.0000
b[cc	chr9:97847407-97847623(+)$1	216	77	81	12.0000
gggg	chr22:20073745-20073984(+)$1	239	48	52	12.0000
oooc	chrX:151126245-151126480(-)$1	235	168	172	12.0000
EEDD	chr11:64658965-64659221(-)$1	256	59	63	12.0000
ffll	chr20:62588893-62589132(-)$1	239	32	36	12.0000
gggg	chr8:144677969-144678250(-)$1	281	188	192	12.0000
oooc	chr1:1241161-1241422(-)$1	261	156	160	12.0000
iiii	chr12:58218108-58218387(-)$1	279	178	182	12.0000
ffff	chr12:62997066-62997288(+)$1	222	33	37	12.0000
qqdd	chr22:42296689-42296906(+)$1	217	24	28	12.0000
ffqq	chr17:79961687-79961934(+)$1	247	24	28	12.0000
cccc	chr11:2156242-2156510(-)$1	268	94	98	12.0000
77ii	chr9:96938201-96938412(+)$1	211	132	136	12.0000
eeee	chr16:2321953-2322215(+)$1	262	134	138	12.0000
dddc	chr16:14401775-14402009(+)$1	234	199	203	12.0000
ddll	chr3:38010418-38010652(+)$1	234	26	30	12.0000
gggg	chr12:58218984-58219223(-)$1	239	41	45	12.0000
OOOO	chr22:42298609-42298839(+)$1	230	34	38	12.0000
ooee	chr16:14403415-14403650(+)$1	235	228	232	12.0000
::cc	chr16:70696327-70696570(-)$1	243	127	131	12.0000
gggg	chr22:42296900-42297110(+)$1	210	120	124	12.0000
b[cc	chr9:97847385-97847602(+)$1	217	99	103	12.0000
f:cc	chr2:136422846-136423088(+)$1	242	195	199	12.0000
cmmm	chr16:21531435-21531717(-)$1	282	166	170	12.0000
CC{D	chr16:14396140-14396364(+)$1	224	2	6	12.0000
GGGG	chr22:41487787-41488063(+)$1	276	87	91	12.0000
ffcc	chr17:57918485-57918697(+)$1	212	82	86	12.0000
====	chr22:24497891-24498112(+)$1	221	25	29	12.0000
BB{B	chr20:4667469-4667732(+)$1	263	8	12	12.0000
nnnn	chr7:150935603-150935845(+)$1	242	32	36	12.0000
ffff	chrX:73438178-73438425(-)$1	247	199	203	12.0000
JJJJ	chr11:75046135-75046383(-)$1	248	42	46	12.0000
!!ee	chr12:1800544-1800814(+)$1	270	118	122	12.0000
eeee	chr4:128982552-128982819(+)$1	267	25	29	12.0000
FFFF	chr2:196522006-196522374(+)$1	368	64	68	12.0000
gggg	chr9:127044369-127044642(+)$1	273	119	123	12.0000
eeee	chr11:75046684-75046912(-)$1	228	208	212	12.0000
22cc	chr16:89971820-89972084(+)$1	264	83	87	12.0000
:DDD	chr17:11985168-11985404(+)$1	236	1	5	12.0000
dddb	chr9:140349831-140350093(-)$1	262	129	133	12.0000
bb[b	chr22:22007616-22007871(+)$1	255	62	66	12.0000
qqbb	chr16:89267005-89267272(-)$1	267	53	57	12.0000
eeee	chr11:57408651-57408884(+)$1	233	18	22	12.0000
hhhh	chr14:23426056-23426318(-)$1	262	59	63	12.0000
====	chr1:1102421-1102656(+)$1	235	123	127	12.0000
YDDD	chr22:24494727-24494961(+)$1	234	215	219	12.0000
hhh:	chr16:75278083-75278353(-)$1	270	54	58	12.0000
eeff	chr3:38010235-38010490(+)$1	255	25	29	12.0000
dddd	chr1:90308863-90309141(+)$1	278	57	61	12.0000
llee	chr22:22007190-22007415(+)$1	225	6	10	12.0000
beee	chr7:99691007-99691247(-)$1	240	22	26	12.0000
eeee	chr16:2319026-2319254(+)$1	228	154	158	12.0000
>>>>	chrX:85158496-85158740(-)$1	244	112	116	12.0000
dddd	chr7:1062844-1063119(-)$1	275	250	254	12.0000
gggb	chr1:205417407-205417652(-)$1	245	109	113	12.0000
gggg	chr3:49057962-49058190(-)$1	228	106	110	12.0000
bbgg	chr5:179045617-179045837(-)$1	220	180	184	12.0000
f[dd	chr12:62996677-62996969(+)$1	292	153	157	12.0000
====	chr2:74587287-74587540(-)$1	253	15	19	12.0000
GGGG	chrX:53583251-53583504(-)$1	253	22	26	12.0000
mmdd	chr22:42296854-42297074(+)$1	220	13	17	12.0000
22dd	chr22:20073439-20073660(+)$1	221	134	138	12.0000
KKDD	chr9:97848200-97848433(+)$1	233	29	33	12.0000
EEMM	chr17:57215045-57215278(-)$1	233	23	27	12.0000
mmcc	chr2:219267131-219267365(+)$1	234	33	37	12.0000
ffff	chr12:62996872-62997155(+)$1	283	181	185	12.0000
eeee	chr22:20074299-20074546(+)$1	247	123	127	12.0000
a[ff	chr2:61405213-61405439(+)$1	226	86	90	12.0000
fff[	chr11:779010-779281(+)$1	271	162	166	12.0000

#DB
((.(	chr3:49057852-49058091(-)$1	1	7	11	12.0000
))))	chr7:99691092-99691296(-)$1	1	71	75	12.0000
((..	chr2:32582676-32582932(+)$1	1	61	65	12.0000
.)))	chr17:79972740-79972978(+)$1	1	166	170	12.0000
((((	chr11:64658896-64659113(-)$1	1	162	166	12.0000
((((	chr17:79957114-79957342(+)$1	1	33	37	12.0000
))((	chr11:843716-843957(+)$1	1	127	131	12.0000
((((	chr20:3897926-3898145(+)$1	1	97	101	12.0000
..((	chr20:61598047-61598305(+)$1	1	100	104	12.0000
))))	chr9:97848077-97848304(+)$1	1	152	156	12.0000
((((	chr2:54856728-54856971(+)$1	1	60	64	12.0000
(((.	chr17:19247344-19247614(-)$1	1	74	78	12.0000
..))	chr8:144676420-144676665(-)$1	1	53	57	12.0000
))))	chr1:41222897-41223132(+)$1	1	137	141	12.0000
(.((	chr9:97847407-97847623(+)$1	1	77	81	12.0000
((((	chr22:20073745-20073984(+)$1	1	48	52	12.0000
...)	chrX:151126245-151126480(-)$1	1	168	172	12.0000
((((	chr11:64658965-64659221(-)$1	1	59	63	12.0000
((..	chr20:62588893-62589132(-)$1	1	32	36	12.0000
))))	chr8:144677969-144678250(-)$1	1	188	192	12.0000
...)	chr1:1241161-1241422(-)$1	1	156	160	12.0000
))))	chr12:58218108-58218387(-)$1	1	178	182	12.0000
))))	chr12:62997066-62997288(+)$1	1	33	37	12.0000
..))	chr22:42296689-42296906(+)$1	1	24	28	12.0000
((..	chr17:79961687-79961934(+)$1	1	24	28	12.0000
((((	chr11:2156242-2156510(-)$1	1	94	98	12.0000
..))	chr9:96938201-96938412(+)$1	1	132	136	12.0000
((((	chr16:2321953-2322215(+)$1	1	134	138	12.0000
))))	chr16:14401775-14402009(+)$1	1	199	203	12.0000
((..	chr3:38010418-38010652(+)$1	1	26	30	12.0000
((((	chr12:58218984-58219223(-)$1	1	41	45	12.0000
....	chr22:42298609-42298839(+)$1	1	34	38	12.0000
..))	chr16:14403415-14403650(+)$1	1	228	232	12.0000
..((	chr16:70696327-70696570(-)$1	1	127	131	12.0000
))))	chr22:42296900-42297110(+)$1	1	120	124	12.0000
(.((	chr9:97847385-97847602(+)$1	1	99	103	12.0000
).((	chr2:136422846-136423088(+)$1	1	195	199	12.0000
(...	chr16:21531435-21531717(-)$1	1	166	170	12.0000
((.(	chr16:14396140-14396364(+)$1	1	2	6	12.0000
((((	chr22:41487787-41488063(+)$1	1	87	91	12.0000
))((	chr17:57918485-57918697(+)$1	1	82	86	12.0000
((((	chr22:24497891-24498112(+)$1	1	25	29	12.0000
((.(	chr20:4667469-4667732(+)$1	1	8	12	12.0000
....	chr7:150935603-150935845(+)$1	1	32	36	12.0000
))))	chrX:73438178-73438425(-)$1	1	199	203	12.0000
((((	chr11:75046135-75046383(-)$1	1	42	46	12.0000
..((	chr12:1800544-1800814(+)$1	1	118	122	12.0000
((((	chr4:128982552-128982819(+)$1	1	25	29	12.0000
((((	chr2:196522006-196522374(+)$1	1	64	68	12.0000
((((	chr9:127044369-127044642(+)$1	1	119	123	12.0000
((((	chr11:75046684-75046912(-)$1	1	208	212	12.0000
..))	chr16:89971820-89972084(+)$1	1	83	87	12.0000
.(((	chr17:11985168-11985404(+)$1	1	1	5	12.0000
((((	chr9:140349831-140350093(-)$1	1	129	133	12.0000
((.(	chr22:22007616-22007871(+)$1	1	62	66	12.0000
..))	chr16:89267005-89267272(-)$1	1	53	57	12.0000
))))	chr11:57408651-57408884(+)$1	1	18	22	12.0000
((((	chr14:23426056-23426318(-)$1	1	59	63	12.0000
))))	chr1:1102421-1102656(+)$1	1	123	127	12.0000
.)))	chr22:24494727-24494961(+)$1	1	215	219	12.0000
))).	chr16:75278083-75278353(-)$1	1	54	58	12.0000
))((	chr3:38010235-38010490(+)$1	1	25	29	12.0000
))))	chr1:90308863-90309141(+)$1	1	57	61	12.0000
..))	chr22:22007190-22007415(+)$1	1	6	10	12.0000
))))	chr7:99691007-99691247(-)$1	1	22	26	12.0000
))))	chr16:2319026-2319254(+)$1	1	154	158	12.0000
....	chrX:85158496-85158740(-)$1	1	112	116	12.0000
))))	chr7:1062844-1063119(-)$1	1	250	254	12.0000
))))	chr1:205417407-205417652(-)$1	1	109	113	12.0000
))))	chr3:49057962-49058190(-)$1	1	106	110	12.0000
))))	chr5:179045617-179045837(-)$1	1	180	184	12.0000
(.((	chr12:62996677-62996969(+)$1	1	153	157	12.0000
((((	chr2:74587287-74587540(-)$1	1	15	19	12.0000
((((	chrX:53583251-53583504(-)$1	1	22	26	12.0000
..))	chr22:42296854-42297074(+)$1	1	13	17	12.0000
..))	chr22:20073439-20073660(+)$1	1	134	138	12.0000
..((	chr9:97848200-97848433(+)$1	1	29	33	12.0000
((..	chr17:57215045-57215278(-)$1	1	23	27	12.0000
..))	chr2:219267131-219267365(+)$1	1	33	37	12.0000
))))	chr12:62996872-62997155(+)$1	1	181	185	12.0000
((((	chr22:20074299-20074546(+)$1	1	123	127	12.0000
(.((	chr2:61405213-61405439(+)$1	1	86	90	12.0000
(((.	chr11:779010-779281(+)$1	1	162	166	12.0000

#PSSM
C : 0.92	c : 0.07	
U : 0.92	u : 0.07	
G : 0.92	g : 0.07	
C : 0.92	c : 0.07	

#score	996.0000000000002
#seq	83
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_UTR_m2_run1.nuc.txt

#NT
GGGAUGGAG	chr12:64798468-64798740(+)$1	272	96	105	17.6451
cggagggag	chr11:95522590-95522848(-)$1	258	25	34	17.7258
gggagggug	chr19:38800315-38800604(-)$1	289	43	52	18.9354
GGGGGGGAG	chr15:59280188-59280500(+)$1	312	91	100	18.2903
GGGAGGGGA	chr17:46131908-46132227(+)$1	319	10	19	16.9193
GGGAGGGAG	chr17:38077992-38078226(-)$1	234	181	190	22.2419
GGGAGGGAC	chr1:153930820-153931104(-)$1	284	111	120	18.6129
gggagggga	chr15:68491924-68492241(-)$1	317	90	99	16.9193
GGGAUGGAG	chr19:1472431-1472697(-)$1	266	59	68	17.6451
GGGUGGGGG	chr19:7977900-7978166(+)$1	266	115	124	16.6774
gugagggag	chr16:447653-447917(+)$1	264	24	33	17.4838
GGGAGGGGG	chr17:4850571-4850845(-)$1	274	16	25	20.1451
GGGAGGGUG	chr22:21369284-21369520(+)$1	236	7	16	18.9354
GGGAGGGAG	chr1:44170861-44171115(+)$1	254	76	85	22.2419
UGGAGGGAG	chr17:7477029-7477329(+)$1	300	89	98	17.6451
gggagagag	chr19:55595092-55595424(+)$1	332	75	84	17.5645
GGGUGggag	chr17:56405975-56406233(-)$1	258	12	21	18.7741
gggagggga	chr17:42276859-42277127(-)$1	268	63	72	16.9193
GGGAGGGAG	chr19:50168367-50168679(-)$1	312	293	302	22.2419
GGGAGGGAG	chr17:56167542-56167837(+)$1	295	96	105	22.2419
GGGAGGGAA	chr5:138629685-138630019(+)$1	334	43	52	19.0161
gggaggggg	chr13:42846244-42846467(+)$1	223	32	41	20.1451
gggaggggg	chr16:67700244-67700513(-)$1	269	75	84	20.1451
GGGAGGGGU	chr11:62482482-62482738(-)$1	256	82	91	16.5161
GGGAGGGGG	chr9:33524294-33524568(+)$1	274	93	102	20.1451
GGGAGGGAG	chr1:44170915-44171161(+)$1	246	22	31	22.2419
GGGAGGGAU	chr8:145691411-145691674(+)$1	263	95	104	18.6129
GGAAGGGAG	chr8:87354871-87355164(+)$1	293	25	34	17.7258
GGGGGGGAG	chr6:149639340-149639582(+)$1	242	70	79	18.2903
GGGAGGGGA	chr19:49864600-49864884(-)$1	284	96	105	16.9193
GGGAAGGAG	chr1:213031622-213031941(+)$1	319	50	59	17.5645
GGGAGAGAG	chr14:57734997-57735262(-)$1	265	28	37	17.5645
gggugggag	chr20:62338441-62338681(-)$1	240	82	91	18.7741
gggagggga	chr1:245026188-245026439(-)$1	251	78	87	16.9193
GGGUGGGAG	chr6:33377419-33377663(+)$1	244	136	145	18.7741
GGAAGGGAG	chr12:56632326-56632612(-)$1	286	195	204	17.7258
gggagggag	chr6:86352836-86353095(-)$1	259	125	134	22.2419
GGGUGGGAG	chr16:2551531-2551785(+)$1	254	85	94	18.7741
GGGAGGGGU	chr1:47695064-47695313(-)$1	249	15	24	16.5161
GGGAGGGGC	chr6:31696777-31697042(-)$1	265	117	126	16.5161
gggagggag	chr19:48828645-48828882(+)$1	237	91	100	22.2419
GGGAGGGGG	chr19:14529801-14530095(-)$1	294	101	110	20.1451
GGGAGGCAG	chr1:202129627-202129908(-)$1	281	43	52	17.4032
GGGUGGGAG	chr20:62367789-62368107(+)$1	318	143	152	18.7741
GGGAGGGAG	chr5:137088347-137088567(-)$1	220	54	63	22.2419
AGGAGGGAG	chr1:27561126-27561401(+)$1	275	44	53	17.6451
GGGAGGGAG	chr6:41760510-41760789(-)$1	279	118	127	22.2419
GAGAGGGAG	chr19:41829380-41829646(-)$1	266	62	71	17.4838
GGGAGGGGG	chr10:102761244-102761504(+)$1	260	89	98	20.1451
CGGAGGGAG	chr8:30670160-30670423(-)$1	263	66	75	17.7258
gggagggaa	chr6:86352607-86352829(-)$1	222	86	95	19.0161
GGGAGGGAG	chr5:179248515-179248778(+)$1	263	84	93	22.2419
GGGUGGGAG	chr2:61763832-61764079(-)$1	247	88	97	18.7741
GGGAGGGGG	chr11:67272146-67272484(-)$1	338	145	154	20.1451
GGGUGGGAG	chr16:48387912-48388192(+)$1	280	16	25	18.7741
GGGAGGGAG	chr19:50815321-50815592(-)$1	271	217	226	22.2419
GGGAGGGAG	chr17:37618165-37618454(+)$1	289	3	12	22.2419
GGGAGGGGC	chr19:2096008-2096353(-)$1	345	95	104	16.5161
GGAAGGGAG	chr1:249151723-249152026(-)$1	303	157	166	17.7258
GGGAGGGAA	chr5:138629504-138629742(+)$1	238	224	233	19.0161
GGGAGGGAG	chr2:97525574-97525846(-)$1	272	82	91	22.2419

#otherMatches

#Struct PSSM
!!ccc####	chr20:60962157-60962467(+)$1	310	77	86	18.2096
]bb]ggggg	chr12:64798468-64798740(+)$1	272	96	105	17.6451
EE:::::::	chr11:95522590-95522848(-)$1	258	25	34	17.7258
:HHHHHHHH	chr19:38800315-38800604(-)$1	289	43	52	18.9354
ffff77777	chr15:59280188-59280500(+)$1	312	91	100	18.2903
E::::::::	chr17:46131908-46132227(+)$1	319	10	19	16.9193
hhhhhh"""	chr17:38077992-38078226(-)$1	234	181	190	22.2419
c:::::ddd	chr1:153930820-153931104(-)$1	284	111	120	18.6129
ttttttttt	chr15:68491924-68492241(-)$1	317	90	99	16.9193
cc####ccc	chr19:1472431-1472697(-)$1	266	59	68	17.6451
DDD}EEEEE	chr19:7977900-7978166(+)$1	266	115	124	16.6774
CCC{BBKKC	chr16:447653-447917(+)$1	264	24	33	17.4838
dd]bb:::d	chr17:4850571-4850845(-)$1	274	16	25	20.1451
BKKBB{DDD	chr22:21369284-21369520(+)$1	236	7	16	18.9354
ddddd####	chr1:44170861-44171115(+)$1	254	76	85	22.2419
bb333ccc]	chr17:7477029-7477329(+)$1	300	89	98	17.6451
3ccc]====	chr19:55595092-55595424(+)$1	332	75	84	17.5645
GGGGGGKKC	chr17:56405975-56406233(-)$1	258	12	21	18.7741
::::DDDDK	chr17:42276859-42277127(-)$1	268	63	72	16.9193
:::::::::	chr19:50168367-50168679(-)$1	312	293	302	22.2419
hhhhhh:II	chr17:56167542-56167837(+)$1	295	96	105	22.2419
]ffffff::	chr5:138629685-138630019(+)$1	334	43	52	19.0161
####ggggg	chr13:42846244-42846467(+)$1	223	32	41	20.1451
dddd[eeee	chr16:67700244-67700513(-)$1	269	75	84	20.1451
2bb22a]bb	chr11:62482482-62482738(-)$1	256	82	91	16.5161
MMMCCC{AK	chr9:33524294-33524568(+)$1	274	93	102	20.1451
fff:EEEEE	chr1:44170915-44171161(+)$1	246	22	31	22.2419
EKKFFFFFF	chr8:145691411-145691674(+)$1	263	95	104	18.6129
ooooeeeee	chr8:87354871-87355164(+)$1	293	25	34	17.7258
JJJJJJJ::	chr6:149639340-149639582(+)$1	242	70	79	18.2903
JJJJDDDD{	chr19:49864600-49864884(-)$1	284	96	105	16.9193
rrrrrrrrr	chr1:213031622-213031941(+)$1	319	50	59	17.5645
ooooooddd	chr14:57734997-57735262(-)$1	265	28	37	17.5645
dddd]bb::	chr20:62338441-62338681(-)$1	240	82	91	18.7741
========!	chr1:245026188-245026439(-)$1	251	78	87	16.9193
c]eeeee::	chr6:33377419-33377663(+)$1	244	136	145	18.7741
333ccc22c	chr12:56632326-56632612(-)$1	286	195	204	17.7258
}A}BBZZZB	chr6:86352836-86353095(-)$1	259	125	134	22.2419
]bb]eeeee	chr16:2551531-2551785(+)$1	254	85	94	18.7741
hhhhh[ggg	chr1:47695064-47695313(-)$1	249	15	24	16.5161
ggggggg[a	chr6:31696777-31697042(-)$1	265	117	126	16.5161
LHHHHHHHH	chr19:48828645-48828882(+)$1	237	91	100	22.2419
fffff[ccc	chr19:14529801-14530095(-)$1	294	101	110	20.1451
[bb!!ccc!	chr1:202129627-202129908(-)$1	281	43	52	17.4032
GGG:::::c	chr20:62367789-62368107(+)$1	318	143	152	18.7741
ddd[bb[cc	chr5:137088347-137088567(-)$1	220	54	63	22.2419
]ccc333gg	chr1:27561126-27561401(+)$1	275	44	53	17.6451
nnnnnbb00	chr6:41760510-41760789(-)$1	279	118	127	22.2419
D{GGGGGGG	chr19:41829380-41829646(-)$1	266	62	71	17.4838
ccc::EEEE	chr10:102761244-102761504(+)$1	260	89	98	20.1451
cc22cccee	chr8:30670160-30670423(-)$1	263	66	75	17.7258
:::::::::	chr6:86352607-86352829(-)$1	222	86	95	19.0161
LDDDDFFFF	chr5:179248515-179248778(+)$1	263	84	93	22.2419
[ddddffff	chr2:61763832-61764079(-)$1	247	88	97	18.7741
GGG{AMMMM	chr11:67272146-67272484(-)$1	338	145	154	20.1451
CC{EEEEEa	chr16:48387912-48388192(+)$1	280	16	25	18.7741
!bb[=====	chr19:50815321-50815592(-)$1	271	217	226	22.2419
DD:eeeee[	chr17:37618165-37618454(+)$1	289	3	12	22.2419
ciiiiiiii	chr19:2096008-2096353(-)$1	345	95	104	16.5161
@@@@@@@@B	chr1:249151723-249152026(-)$1	303	157	166	17.7258
EEEE:::::	chr5:138629504-138629742(+)$1	238	224	233	19.0161
ffffffrrr	chr2:97525574-97525846(-)$1	272	82	91	22.2419

#DB
..(((....	chr20:60962157-60962467(+)$1	1	77	86	18.2096
.)).)))))	chr12:64798468-64798740(+)$1	1	96	105	17.6451
((.......	chr11:95522590-95522848(-)$1	1	25	34	17.7258
.((((((((	chr19:38800315-38800604(-)$1	1	43	52	18.9354
)))).....	chr15:59280188-59280500(+)$1	1	91	100	18.2903
(........	chr17:46131908-46132227(+)$1	1	10	19	16.9193
((((((...	chr17:38077992-38078226(-)$1	1	181	190	22.2419
).....(((	chr1:153930820-153931104(-)$1	1	111	120	18.6129
.........	chr15:68491924-68492241(-)$1	1	90	99	16.9193
((....(((	chr19:1472431-1472697(-)$1	1	59	68	17.6451
))).)))))	chr19:7977900-7978166(+)$1	1	115	124	16.6774
(((.((..(	chr16:447653-447917(+)$1	1	24	33	17.4838
)).))...(	chr17:4850571-4850845(-)$1	1	16	25	20.1451
(..((.(((	chr22:21369284-21369520(+)$1	1	7	16	18.9354
(((((....	chr1:44170861-44171115(+)$1	1	76	85	22.2419
))...))).	chr17:7477029-7477329(+)$1	1	89	98	17.6451
.))).))))	chr19:55595092-55595424(+)$1	1	75	84	17.5645
((((((..(	chr17:56405975-56406233(-)$1	1	12	21	18.7741
....((((.	chr17:42276859-42277127(-)$1	1	63	72	16.9193
.........	chr19:50168367-50168679(-)$1	1	293	302	22.2419
)))))).((	chr17:56167542-56167837(+)$1	1	96	105	22.2419
.))))))..	chr5:138629685-138630019(+)$1	1	43	52	19.0161
....(((((	chr13:42846244-42846467(+)$1	1	32	41	20.1451
((((.((((	chr16:67700244-67700513(-)$1	1	75	84	20.1451
.))..).))	chr11:62482482-62482738(-)$1	1	82	91	16.5161
...(((.(.	chr9:33524294-33524568(+)$1	1	93	102	20.1451
))).(((((	chr1:44170915-44171161(+)$1	1	22	31	22.2419
(..((((((	chr8:145691411-145691674(+)$1	1	95	104	18.6129
....)))))	chr8:87354871-87355164(+)$1	1	25	34	17.7258
(((((((..	chr6:149639340-149639582(+)$1	1	70	79	18.2903
((((((((.	chr19:49864600-49864884(-)$1	1	96	105	16.9193
.........	chr1:213031622-213031941(+)$1	1	50	59	17.5645
......)))	chr14:57734997-57735262(-)$1	1	28	37	17.5645
)))).))..	chr20:62338441-62338681(-)$1	1	82	91	18.7741
((((((((.	chr1:245026188-245026439(-)$1	1	78	87	16.9193
).)))))..	chr6:33377419-33377663(+)$1	1	136	145	18.7741
...)))..)	chr12:56632326-56632612(-)$1	1	195	204	17.7258
.).))...)	chr6:86352836-86353095(-)$1	1	125	134	22.2419
.)).)))))	chr16:2551531-2551785(+)$1	1	85	94	18.7741
(((((.(((	chr1:47695064-47695313(-)$1	1	15	24	16.5161
(((((((.(	chr6:31696777-31697042(-)$1	1	117	126	16.5161
.((((((((	chr19:48828645-48828882(+)$1	1	91	100	22.2419
(((((.(((	chr19:14529801-14530095(-)$1	1	101	110	20.1451
.((..(((.	chr1:202129627-202129908(-)$1	1	43	52	17.4032
(((.....(	chr20:62367789-62368107(+)$1	1	143	152	18.7741
(((.((.((	chr5:137088347-137088567(-)$1	1	54	63	22.2419
.)))...))	chr1:27561126-27561401(+)$1	1	44	53	17.6451
.....))..	chr6:41760510-41760789(-)$1	1	118	127	22.2419
(.(((((((	chr19:41829380-41829646(-)$1	1	62	71	17.4838
)))..))))	chr10:102761244-102761504(+)$1	1	89	98	20.1451
))..)))))	chr8:30670160-30670423(-)$1	1	66	75	17.7258
.........	chr6:86352607-86352829(-)$1	1	86	95	19.0161
.((((((((	chr5:179248515-179248778(+)$1	1	84	93	22.2419
.((((((((	chr2:61763832-61764079(-)$1	1	88	97	18.7741
(((.(....	chr11:67272146-67272484(-)$1	1	145	154	20.1451
((.((((((	chr16:48387912-48388192(+)$1	1	16	25	18.7741
.((.(((((	chr19:50815321-50815592(-)$1	1	217	226	22.2419
((.(((((.	chr17:37618165-37618454(+)$1	1	3	12	22.2419
)))))))))	chr19:2096008-2096353(-)$1	1	95	104	16.5161
........)	chr1:249151723-249152026(-)$1	1	157	166	17.7258
)))).....	chr5:138629504-138629742(+)$1	1	224	233	19.0161
((((((...	chr2:97525574-97525846(-)$1	1	82	91	22.2419

#PSSM
G : 0.72	g : 0.20	c : 0.01	U : 0.01	A : 0.01	C : 0.01	
G : 0.75	g : 0.20	u : 0.01	A : 0.01	
G : 0.72	g : 0.22	A : 0.04	
A : 0.62	a : 0.19	U : 0.11	G : 0.03	c : 0.01	u : 0.01	
G : 0.72	g : 0.22	U : 0.03	A : 0.01	
G : 0.74	g : 0.22	a : 0.01	A : 0.01	
G : 0.74	g : 0.24	C : 0.01	
A : 0.54	G : 0.19	a : 0.14	g : 0.08	u : 0.01	U : 0.01	
G : 0.59	g : 0.17	A : 0.06	a : 0.06	C : 0.04	U : 0.04	

#score	1180.129032258064
#seq	62
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_CDS_m2_run2.nuc.txt

#NT
UCU	chr19:10441097-10441364(-)$1	267	122	125	9.0000
UCU	chr5:179036220-179036482(+)$1	262	78	81	9.0000
UCU	chr3:49135799-49136066(-)$1	267	121	124	9.0000
UCU	chr12:133374910-133375170(-)$1	260	50	53	9.0000
UCU	chr2:44444944-44445239(+)$1	295	18	21	9.0000
UCU	chr2:97278173-97278462(-)$1	289	21	24	9.0000
UCU	chr13:113480858-113481131(+)$1	273	12	15	9.0000
UCU	chr7:87507221-87507480(+)$1	259	65	68	9.0000
UCU	chr7:892887-893165(+)$1	278	23	26	9.0000
UCU	chr4:79754623-79754867(+)$1	244	7	10	9.0000
UCU	chr17:79866405-79866662(-)$1	257	15	18	9.0000
UCU	chr5:174938960-174939235(+)$1	275	27	30	9.0000
UCU	chr11:68207094-68207355(+)$1	261	45	48	9.0000
UCU	chr1:145578479-145578742(+)$1	263	7	10	9.0000
UCU	chr2:64327487-64327787(-)$1	300	20	23	9.0000
UCU	chr17:79657629-79657864(+)$1	235	13	16	9.0000
UCU	chr17:45894107-45894388(-)$1	281	25	28	9.0000
UCU	chr1:78430754-78431018(-)$1	264	41	44	9.0000
UCU	chr17:17131338-17131626(-)$1	288	36	39	9.0000
UCU	chr19:55915733-55916005(-)$1	272	33	36	9.0000
UCU	chr8:144413359-144413665(-)$1	306	9	12	9.0000
UCU	chr6:49583360-49583635(-)$1	275	14	17	9.0000
UCU	chr2:61610327-61610615(-)$1	288	63	66	9.0000
UCU	chr22:21975638-21975916(+)$1	278	0	3	9.0000
UCU	chr14:100820088-100820360(-)$1	272	133	136	9.0000
UCU	chr16:71958513-71958848(+)$1	335	2	5	9.0000
UCU	chrX:48674141-48674422(+)$1	281	24	27	9.0000
UCU	chr14:103957963-103958249(+)$1	286	43	46	9.0000
ucu	chr1:47767887-47768168(-)$1	281	37	40	9.0000
UCU	chr14:96784039-96784345(-)$1	306	18	21	9.0000
UCU	chr3:128200672-128200948(-)$1	276	6	9	9.0000
UCU	chr2:8946355-8946619(-)$1	264	68	71	9.0000
UCU	chr5:90671194-90671435(-)$1	241	36	39	9.0000
ucu	chr21:44488611-44488857(-)$1	246	7	10	9.0000
UCU	chr15:59189294-59189538(-)$1	244	63	66	9.0000
ucu	chr19:47763419-47763683(+)$1	264	34	37	9.0000
UCU	chr9:114694331-114694588(+)$1	257	13	16	9.0000
UCU	chr20:49206186-49206450(-)$1	264	103	106	9.0000
ucu	chr20:34312953-34313219(-)$1	266	21	24	9.0000
UCU	chr4:57865641-57865917(+)$1	276	30	33	9.0000
UCU	chr11:45992799-45993053(-)$1	254	1	4	9.0000
UCU	chr1:186359674-186359990(+)$1	316	26	29	9.0000
UCU	chr2:70454822-70455093(-)$1	271	91	94	9.0000
UCU	chr5:131531069-131531324(-)$1	255	65	68	9.0000
UCU	chr7:138963954-138964217(+)$1	263	53	56	9.0000
UCU	chrX:13771331-13771608(+)$1	277	103	106	9.0000
UCU	chr1:3807468-3807783(-)$1	315	36	39	9.0000
UCU	chr12:50152852-50153140(+)$1	288	19	22	9.0000
UCU	chr6:32147262-32147542(+)$1	280	2	5	9.0000
UCU	chr8:145657713-145657988(-)$1	275	8	11	9.0000
UCU	chr19:1422186-1422452(+)$1	266	149	152	9.0000
UCU	chr8:145619259-145619527(-)$1	268	74	77	9.0000
UCU	chr1:44441604-44441879(+)$1	275	136	139	9.0000
UCU	chr8:30567280-30567527(-)$1	247	11	14	9.0000
UCU	chr7:100855129-100855405(-)$1	276	91	94	9.0000
UCU	chr3:186518787-186519131(-)$1	344	25	28	9.0000
UCU	chr22:19752331-19752590(+)$1	259	13	16	9.0000
UCU	chr17:46993284-46993571(+)$1	287	110	113	9.0000
UCU	chr12:57625346-57625631(+)$1	285	115	118	9.0000
UCU	chr16:58577687-58577946(-)$1	259	46	49	9.0000
UCU	chr16:88722027-88722297(-)$1	270	23	26	9.0000
UCU	chr11:831052-831332(+)$1	280	47	50	9.0000
UCU	chr1:90475497-90475788(+)$1	291	105	108	9.0000
ucu	chr19:47875831-47876096(+)$1	265	7	10	9.0000
UCU	chr3:183901102-183901407(+)$1	305	2	5	9.0000
ucu	chr19:40761045-40761335(-)$1	290	26	29	9.0000
UCU	chr11:71720332-71720582(-)$1	250	27	30	9.0000
UCU	chr21:45175429-45175685(+)$1	256	133	136	9.0000
UCU	chr2:170492771-170493027(+)$1	256	98	101	9.0000
UCU	chr1:150522958-150523228(+)$1	270	31	34	9.0000
UCU	chr4:151231391-151231692(-)$1	301	63	66	9.0000
UCU	chr7:129079719-129079968(+)$1	249	14	17	9.0000
ucu	chrX:48673632-48673901(+)$1	269	43	46	9.0000
UCU	chr22:22049547-22049814(+)$1	267	121	124	9.0000
UCU	chr22:41864021-41864291(-)$1	270	27	30	9.0000
UCU	chr20:33591293-33591579(-)$1	286	19	22	9.0000
UCU	chr14:102508208-102508510(+)$1	302	28	31	9.0000
ucu	chr2:242593813-242594105(+)$1	292	14	17	9.0000
UCU	chr5:32390402-32390637(-)$1	235	41	44	9.0000
ucu	chr4:898441-898721(-)$1	280	13	16	9.0000
UCU	chr19:17691350-17691644(+)$1	294	34	37	9.0000
UCU	chr19:16630022-16630307(-)$1	285	9	12	9.0000
UCU	chr20:2641112-2641384(-)$1	272	27	30	9.0000
UCU	chr19:50183584-50183867(+)$1	283	62	65	9.0000
UCU	chr8:142436886-142437186(+)$1	300	16	19	9.0000
UCU	chr1:45269856-45270129(+)$1	273	30	33	9.0000
UCU	chr7:100484265-100484540(+)$1	275	16	19	9.0000
UCU	chr15:76632463-76632757(+)$1	294	129	132	9.0000
UCU	chr17:60140537-60140816(-)$1	279	9	12	9.0000
UCU	chr1:16053986-16054224(+)$1	238	198	201	9.0000
UCU	chr6:34846381-34846643(-)$1	262	8	11	9.0000
UCU	chr6:31498580-31498849(-)$1	269	49	52	9.0000
UCU	chr19:6742816-6743102(+)$1	286	57	60	9.0000
ucu	chr21:45165804-45166071(+)$1	267	69	72	9.0000
UCU	chr16:85694584-85694861(+)$1	277	53	56	9.0000
UCU	chr1:225592123-225592372(-)$1	249	97	100	9.0000
UCU	chr19:48260109-48260356(+)$1	247	110	113	9.0000

#otherMatches

#Struct PSSM
e""	chr1:182811572-182811807(+)$1	235	37	40	9.0000
h::	chr19:10441097-10441364(-)$1	267	122	125	9.0000
DKK	chr5:179036220-179036482(+)$1	262	78	81	9.0000
[aq	chr3:49135799-49136066(-)$1	267	121	124	9.0000
dd$	chr12:133374910-133375170(-)$1	260	50	53	9.0000
F::	chr2:44444944-44445239(+)$1	295	18	21	9.0000
eee	chr2:97278173-97278462(-)$1	289	21	24	9.0000
qqq	chr13:113480858-113481131(+)$1	273	12	15	9.0000
i##	chr7:87507221-87507480(+)$1	259	65	68	9.0000
gFF	chr7:892887-893165(+)$1	278	23	26	9.0000
[hh	chr4:79754623-79754867(+)$1	244	7	10	9.0000
HHH	chr17:79866405-79866662(-)$1	257	15	18	9.0000
EEE	chr5:174938960-174939235(+)$1	275	27	30	9.0000
bb:	chr11:68207094-68207355(+)$1	261	45	48	9.0000
D::	chr1:145578479-145578742(+)$1	263	7	10	9.0000
sdd	chr2:64327487-64327787(-)$1	300	20	23	9.0000
DDD	chr17:79657629-79657864(+)$1	235	13	16	9.0000
OOO	chr17:45894107-45894388(-)$1	281	25	28	9.0000
GGG	chr1:78430754-78431018(-)$1	264	41	44	9.0000
III	chr17:17131338-17131626(-)$1	288	36	39	9.0000
eee	chr19:55915733-55916005(-)$1	272	33	36	9.0000
GGG	chr8:144413359-144413665(-)$1	306	9	12	9.0000
JJJ	chr6:49583360-49583635(-)$1	275	14	17	9.0000
"""	chr2:61610327-61610615(-)$1	288	63	66	9.0000
:::	chr22:21975638-21975916(+)$1	278	0	3	9.0000
ggg	chr14:100820088-100820360(-)$1	272	133	136	9.0000
:::	chr16:71958513-71958848(+)$1	335	2	5	9.0000
===	chrX:48674141-48674422(+)$1	281	24	27	9.0000
GGG	chr14:103957963-103958249(+)$1	286	43	46	9.0000
!an	chr1:47767887-47768168(-)$1	281	37	40	9.0000
:::	chr14:96784039-96784345(-)$1	306	18	21	9.0000
:ee	chr3:128200672-128200948(-)$1	276	6	9	9.0000
FFF	chr2:8946355-8946619(-)$1	264	68	71	9.0000
QQQ	chr5:90671194-90671435(-)$1	241	36	39	9.0000
KCC	chr21:44488611-44488857(-)$1	246	7	10	9.0000
DDD	chr15:59189294-59189538(-)$1	244	63	66	9.0000
ddd	chr19:47763419-47763683(+)$1	264	34	37	9.0000
FFF	chr9:114694331-114694588(+)$1	257	13	16	9.0000
bb]	chr20:49206186-49206450(-)$1	264	103	106	9.0000
:::	chr20:34312953-34313219(-)$1	266	21	24	9.0000
GGG	chr4:57865641-57865917(+)$1	276	30	33	9.0000
:::	chr11:45992799-45993053(-)$1	254	1	4	9.0000
ccm	chr1:186359674-186359990(+)$1	316	26	29	9.0000
rrr	chr2:70454822-70455093(-)$1	271	91	94	9.0000
uuu	chr5:131531069-131531324(-)$1	255	65	68	9.0000
DDD	chr7:138963954-138964217(+)$1	263	53	56	9.0000
d::	chrX:13771331-13771608(+)$1	277	103	106	9.0000
cff	chr1:3807468-3807783(-)$1	315	36	39	9.0000
GGG	chr12:50152852-50153140(+)$1	288	19	22	9.0000
GGG	chr6:32147262-32147542(+)$1	280	2	5	9.0000
LLL	chr8:145657713-145657988(-)$1	275	8	11	9.0000
]a]	chr19:1422186-1422452(+)$1	266	149	152	9.0000
rhh	chr8:145619259-145619527(-)$1	268	74	77	9.0000
EEY	chr1:44441604-44441879(+)$1	275	136	139	9.0000
GGG	chr8:30567280-30567527(-)$1	247	11	14	9.0000
eee	chr7:100855129-100855405(-)$1	276	91	94	9.0000
sss	chr3:186518787-186519131(-)$1	344	25	28	9.0000
ggg	chr22:19752331-19752590(+)$1	259	13	16	9.0000
33g	chr17:46993284-46993571(+)$1	287	110	113	9.0000
odd	chr12:57625346-57625631(+)$1	285	115	118	9.0000
JJJ	chr16:58577687-58577946(-)$1	259	46	49	9.0000
nnn	chr16:88722027-88722297(-)$1	270	23	26	9.0000
hhh	chr11:831052-831332(+)$1	280	47	50	9.0000
III	chr1:90475497-90475788(+)$1	291	105	108	9.0000
:hh	chr19:47875831-47876096(+)$1	265	7	10	9.0000
eee	chr3:183901102-183901407(+)$1	305	2	5	9.0000
DDD	chr19:40761045-40761335(-)$1	290	26	29	9.0000
&&&	chr11:71720332-71720582(-)$1	250	27	30	9.0000
]gg	chr21:45175429-45175685(+)$1	256	133	136	9.0000
eee	chr2:170492771-170493027(+)$1	256	98	101	9.0000
eee	chr1:150522958-150523228(+)$1	270	31	34	9.0000
:::	chr4:151231391-151231692(-)$1	301	63	66	9.0000
CKK	chr7:129079719-129079968(+)$1	249	14	17	9.0000
::e	chrX:48673632-48673901(+)$1	269	43	46	9.0000
===	chr22:22049547-22049814(+)$1	267	121	124	9.0000
DDD	chr22:41864021-41864291(-)$1	270	27	30	9.0000
:::	chr20:33591293-33591579(-)$1	286	19	22	9.0000
ooe	chr14:102508208-102508510(+)$1	302	28	31	9.0000
ddd	chr2:242593813-242594105(+)$1	292	14	17	9.0000
fff	chr5:32390402-32390637(-)$1	235	41	44	9.0000
e!!	chr4:898441-898721(-)$1	280	13	16	9.0000
dd[	chr19:17691350-17691644(+)$1	294	34	37	9.0000
doo	chr19:16630022-16630307(-)$1	285	9	12	9.0000
Ecc	chr20:2641112-2641384(-)$1	272	27	30	9.0000
iii	chr19:50183584-50183867(+)$1	283	62	65	9.0000
lll	chr8:142436886-142437186(+)$1	300	16	19	9.0000
ttt	chr1:45269856-45270129(+)$1	273	30	33	9.0000
:::	chr7:100484265-100484540(+)$1	275	16	19	9.0000
888	chr15:76632463-76632757(+)$1	294	129	132	9.0000
JJJ	chr17:60140537-60140816(-)$1	279	9	12	9.0000
ddd	chr1:16053986-16054224(+)$1	238	198	201	9.0000
HHH	chr6:34846381-34846643(-)$1	262	8	11	9.0000
^^^	chr6:31498580-31498849(-)$1	269	49	52	9.0000
===	chr19:6742816-6743102(+)$1	286	57	60	9.0000
ddd	chr21:45165804-45166071(+)$1	267	69	72	9.0000
dd[	chr16:85694584-85694861(+)$1	277	53	56	9.0000
g!!	chr1:225592123-225592372(-)$1	249	97	100	9.0000
ttt	chr19:48260109-48260356(+)$1	247	110	113	9.0000

#DB
(..	chr1:182811572-182811807(+)$1	1	37	40	9.0000
)..	chr19:10441097-10441364(-)$1	1	122	125	9.0000
(..	chr5:179036220-179036482(+)$1	1	78	81	9.0000
.(.	chr3:49135799-49136066(-)$1	1	121	124	9.0000
((.	chr12:133374910-133375170(-)$1	1	50	53	9.0000
(..	chr2:44444944-44445239(+)$1	1	18	21	9.0000
)))	chr2:97278173-97278462(-)$1	1	21	24	9.0000
...	chr13:113480858-113481131(+)$1	1	12	15	9.0000
(..	chr7:87507221-87507480(+)$1	1	65	68	9.0000
)((	chr7:892887-893165(+)$1	1	23	26	9.0000
.((	chr4:79754623-79754867(+)$1	1	7	10	9.0000
(((	chr17:79866405-79866662(-)$1	1	15	18	9.0000
(((	chr5:174938960-174939235(+)$1	1	27	30	9.0000
)).	chr11:68207094-68207355(+)$1	1	45	48	9.0000
(..	chr1:145578479-145578742(+)$1	1	7	10	9.0000
.))	chr2:64327487-64327787(-)$1	1	20	23	9.0000
(((	chr17:79657629-79657864(+)$1	1	13	16	9.0000
...	chr17:45894107-45894388(-)$1	1	25	28	9.0000
(((	chr1:78430754-78431018(-)$1	1	41	44	9.0000
(((	chr17:17131338-17131626(-)$1	1	36	39	9.0000
(((	chr19:55915733-55916005(-)$1	1	33	36	9.0000
(((	chr8:144413359-144413665(-)$1	1	9	12	9.0000
(((	chr6:49583360-49583635(-)$1	1	14	17	9.0000
...	chr2:61610327-61610615(-)$1	1	63	66	9.0000
...	chr22:21975638-21975916(+)$1	1	0	3	9.0000
)))	chr14:100820088-100820360(-)$1	1	133	136	9.0000
...	chr16:71958513-71958848(+)$1	1	2	5	9.0000
)))	chrX:48674141-48674422(+)$1	1	24	27	9.0000
(((	chr14:103957963-103958249(+)$1	1	43	46	9.0000
.(.	chr1:47767887-47768168(-)$1	1	37	40	9.0000
...	chr14:96784039-96784345(-)$1	1	18	21	9.0000
.((	chr3:128200672-128200948(-)$1	1	6	9	9.0000
(((	chr2:8946355-8946619(-)$1	1	68	71	9.0000
...	chr5:90671194-90671435(-)$1	1	36	39	9.0000
.((	chr21:44488611-44488857(-)$1	1	7	10	9.0000
(((	chr15:59189294-59189538(-)$1	1	63	66	9.0000
(((	chr19:47763419-47763683(+)$1	1	34	37	9.0000
(((	chr9:114694331-114694588(+)$1	1	13	16	9.0000
)).	chr20:49206186-49206450(-)$1	1	103	106	9.0000
...	chr20:34312953-34313219(-)$1	1	21	24	9.0000
(((	chr4:57865641-57865917(+)$1	1	30	33	9.0000
...	chr11:45992799-45993053(-)$1	1	1	4	9.0000
((.	chr1:186359674-186359990(+)$1	1	26	29	9.0000
...	chr2:70454822-70455093(-)$1	1	91	94	9.0000
...	chr5:131531069-131531324(-)$1	1	65	68	9.0000
(((	chr7:138963954-138964217(+)$1	1	53	56	9.0000
)..	chrX:13771331-13771608(+)$1	1	103	106	9.0000
(((	chr1:3807468-3807783(-)$1	1	36	39	9.0000
(((	chr12:50152852-50153140(+)$1	1	19	22	9.0000
(((	chr6:32147262-32147542(+)$1	1	2	5	9.0000
...	chr8:145657713-145657988(-)$1	1	8	11	9.0000
.).	chr19:1422186-1422452(+)$1	1	149	152	9.0000
.))	chr8:145619259-145619527(-)$1	1	74	77	9.0000
)).	chr1:44441604-44441879(+)$1	1	136	139	9.0000
(((	chr8:30567280-30567527(-)$1	1	11	14	9.0000
)))	chr7:100855129-100855405(-)$1	1	91	94	9.0000
...	chr3:186518787-186519131(-)$1	1	25	28	9.0000
(((	chr22:19752331-19752590(+)$1	1	13	16	9.0000
..)	chr17:46993284-46993571(+)$1	1	110	113	9.0000
.))	chr12:57625346-57625631(+)$1	1	115	118	9.0000
(((	chr16:58577687-58577946(-)$1	1	46	49	9.0000
...	chr16:88722027-88722297(-)$1	1	23	26	9.0000
(((	chr11:831052-831332(+)$1	1	47	50	9.0000
(((	chr1:90475497-90475788(+)$1	1	105	108	9.0000
.((	chr19:47875831-47876096(+)$1	1	7	10	9.0000
(((	chr3:183901102-183901407(+)$1	1	2	5	9.0000
(((	chr19:40761045-40761335(-)$1	1	26	29	9.0000
...	chr11:71720332-71720582(-)$1	1	27	30	9.0000
.))	chr21:45175429-45175685(+)$1	1	133	136	9.0000
)))	chr2:170492771-170493027(+)$1	1	98	101	9.0000
)))	chr1:150522958-150523228(+)$1	1	31	34	9.0000
...	chr4:151231391-151231692(-)$1	1	63	66	9.0000
(..	chr7:129079719-129079968(+)$1	1	14	17	9.0000
..(	chrX:48673632-48673901(+)$1	1	43	46	9.0000
)))	chr22:22049547-22049814(+)$1	1	121	124	9.0000
(((	chr22:41864021-41864291(-)$1	1	27	30	9.0000
...	chr20:33591293-33591579(-)$1	1	19	22	9.0000
..)	chr14:102508208-102508510(+)$1	1	28	31	9.0000
)))	chr2:242593813-242594105(+)$1	1	14	17	9.0000
(((	chr5:32390402-32390637(-)$1	1	41	44	9.0000
(..	chr4:898441-898721(-)$1	1	13	16	9.0000
((.	chr19:17691350-17691644(+)$1	1	34	37	9.0000
(..	chr19:16630022-16630307(-)$1	1	9	12	9.0000
(((	chr20:2641112-2641384(-)$1	1	27	30	9.0000
(((	chr19:50183584-50183867(+)$1	1	62	65	9.0000
...	chr8:142436886-142437186(+)$1	1	16	19	9.0000
...	chr1:45269856-45270129(+)$1	1	30	33	9.0000
...	chr7:100484265-100484540(+)$1	1	16	19	9.0000
...	chr15:76632463-76632757(+)$1	1	129	132	9.0000
(((	chr17:60140537-60140816(-)$1	1	9	12	9.0000
(((	chr1:16053986-16054224(+)$1	1	198	201	9.0000
(((	chr6:34846381-34846643(-)$1	1	8	11	9.0000
...	chr6:31498580-31498849(-)$1	1	49	52	9.0000
)))	chr19:6742816-6743102(+)$1	1	57	60	9.0000
(((	chr21:45165804-45166071(+)$1	1	69	72	9.0000
((.	chr16:85694584-85694861(+)$1	1	53	56	9.0000
(..	chr1:225592123-225592372(-)$1	1	97	100	9.0000
...	chr19:48260109-48260356(+)$1	1	110	113	9.0000

#PSSM
U : 0.89	u : 0.10	
C : 0.89	c : 0.10	
U : 0.89	u : 0.10	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_CDS_m2_run1.nuc.txt

#NT
AGAA	chr7:99008607-99008889(+)$1	282	52	56	11.9999
AGAA	chr3:33686161-33686499(-)$1	338	123	127	11.9999
AGAA	chr4:1746581-1746846(+)$1	265	25	29	11.9999
AGAA	chr20:47682627-47682885(+)$1	258	1	5	11.9999
AGAA	chr14:23792546-23792764(+)$1	218	59	63	11.9999
AGAA	chr7:91603010-91603245(+)$1	235	32	36	11.9999
AGAA	chr15:80189074-80189449(-)$1	375	231	235	11.9999
AGAA	chr21:30442469-30442751(-)$1	282	107	111	11.9999
AGAA	chrX:53588777-53588986(-)$1	209	53	57	11.9999
AGAA	chr16:19726066-19726340(-)$1	274	23	27	11.9999
AGAA	chr6:144178791-144179094(+)$1	303	105	109	11.9999
AGAA	chr9:100403743-100404009(+)$1	266	126	130	11.9999
AGAA	chr17:7481044-7481275(+)$1	231	21	25	11.9999
AGAA	chr7:150920924-150921211(-)$1	287	161	165	11.9999
AGAA	chr1:207963496-207963703(+)$1	207	128	132	11.9999
AGAA	chr7:156745064-156745401(+)$1	337	42	46	11.9999
AGAA	chr10:129904572-129904814(-)$1	242	5	9	11.9999
AGAA	chr12:76449748-76449962(-)$1	214	32	36	11.9999
AGAA	chr1:25571683-25571893(-)$1	210	117	121	11.9999
AGAA	chr17:38282461-38282761(+)$1	300	20	24	11.9999
AGAA	chr11:94180287-94180522(-)$1	235	7	11	11.9999
AGAA	chr7:43843308-43843547(+)$1	239	128	132	11.9999
AGAA	chr21:34974438-34974756(-)$1	318	12	16	11.9999
AGAA	chr17:8457177-8457422(-)$1	245	184	188	11.9999
AGAA	chr6:30546024-30546259(+)$1	235	127	131	11.9999
AGAA	chr12:56510871-56511075(+)$1	204	108	112	11.9999
AGAA	chr1:45228121-45228365(+)$1	244	31	35	11.9999
AGAA	chr5:176335429-176335712(-)$1	283	22	26	11.9999
AGAA	chr18:3253785-3254041(+)$1	256	104	108	11.9999
AGAA	chr5:141353048-141353381(+)$1	333	113	117	11.9999
AGAA	chr11:65623080-65623295(-)$1	215	156	160	11.9999
AGAA	chr1:235345690-235346007(-)$1	317	6	10	11.9999
AGAA	chr11:67376062-67376293(+)$1	231	218	222	11.9999
AGAA	chr8:106431260-106431573(+)$1	313	142	146	11.9999
AGAA	chr1:153634760-153635115(-)$1	355	132	136	11.9999
AGAA	chr12:56716782-56717091(-)$1	309	154	158	11.9999
AGAA	chr12:122966383-122966620(-)$1	237	16	20	11.9999
AGAA	chr6:116966848-116967119(-)$1	271	52	56	11.9999
AGAA	chr12:6692401-6692619(-)$1	218	89	93	11.9999
AGAA	chr12:6690356-6690561(-)$1	205	5	9	11.9999
AGAA	chr14:24679776-24680074(-)$1	298	45	49	11.9999
AGAA	chr14:73563535-73563762(+)$1	227	85	89	11.9999
AGAA	chr3:64004442-64004708(-)$1	266	1	5	11.9999
AGAA	chr2:153519015-153519237(-)$1	222	72	76	11.9999
AGAA	chr1:245027463-245027681(-)$1	218	133	137	11.9999
AGAA	chr1:174188157-174188449(+)$1	292	119	123	11.9999
AGAA	chrX:153676999-153677204(+)$1	205	45	49	11.9999
AGAA	chr14:31588842-31589161(-)$1	319	91	95	11.9999
AGAA	chr22:24953610-24953870(+)$1	260	12	16	11.9999
AGAA	chr2:54855984-54856264(+)$1	280	230	234	11.9999
AGAA	chr1:186321108-186321330(-)$1	222	96	100	11.9999
AGAA	chr1:40209393-40209698(+)$1	305	126	130	11.9999
AGAA	chr12:53295669-53295954(-)$1	285	19	23	11.9999
agaa	chr6:44218189-44218425(+)$1	236	10	14	11.9999
AGAA	chr14:103807263-103807557(+)$1	294	186	190	11.9999
AGAA	chr2:217365962-217366173(+)$1	211	135	139	11.9999
AGAA	chr14:102549290-102549506(-)$1	216	18	22	11.9999
AGAA	chr14:102549306-102549524(-)$1	218	36	40	11.9999
AGAA	chr3:47762108-47762325(-)$1	217	98	102	11.9999
AGAA	chr20:30385211-30385416(+)$1	205	0	4	11.9999
AGAA	chr7:148711963-148712231(-)$1	268	95	99	11.9999
AGAA	chr4:56466590-56466797(-)$1	207	57	61	11.9999
AGAA	chr17:8402516-8402830(-)$1	314	52	56	11.9999
AGAA	chr20:33095399-33095711(+)$1	312	169	173	11.9999
AGAA	chr2:101622711-101622917(+)$1	206	10	14	11.9999
AGAA	chr9:101611260-101611555(+)$1	295	1	5	11.9999
AGAA	chr13:103514629-103514991(+)$1	362	117	121	11.9999
AGAA	chr1:24978823-24979128(+)$1	305	13	17	11.9999
agaa	chr2:29001598-29001905(+)$1	307	20	24	11.9999
AGAA	chr1:85117544-85117782(-)$1	238	102	106	11.9999
AGAA	chr17:34173993-34174268(+)$1	275	111	115	11.9999
AGAA	chrX:153196112-153196405(-)$1	293	2	6	11.9999
AGAA	chr4:110394108-110394418(+)$1	310	155	159	11.9999
AGAA	chr19:3618774-3619059(-)$1	285	97	101	11.9999
agaa	chr12:56999541-56999811(-)$1	270	25	29	11.9999
AGAA	chr7:140404630-140404864(+)$1	234	70	74	11.9999
AGAA	chr3:47730799-47731007(-)$1	208	45	49	11.9999
AGAA	chr2:27684527-27684802(-)$1	275	97	101	11.9999
AGAA	chr10:73590869-73591108(-)$1	239	122	126	11.9999
AGAA	chr9:131277733-131278024(+)$1	291	1	5	11.9999
AGAA	chr10:71129263-71129482(+)$1	219	18	22	11.9999
AGAA	chr12:121783556-121783855(-)$1	299	111	115	11.9999
AGAA	chr1:45220321-45220549(+)$1	228	147	151	11.9999
AGAA	chr12:111160171-111160406(-)$1	235	69	73	11.9999

#otherMatches

#Struct PSSM
dddd	chr7:158448874-158449135(-)$1	261	110	114	11.9999
GGWW	chr7:99008607-99008889(+)$1	282	52	56	11.9999
nnnd	chr3:33686161-33686499(-)$1	338	123	127	11.9999
eee]	chr4:1746581-1746846(+)$1	265	25	29	11.9999
::::	chr20:47682627-47682885(+)$1	258	1	5	11.9999
[ccc	chr14:23792546-23792764(+)$1	218	59	63	11.9999
bbnn	chr7:91603010-91603245(+)$1	235	32	36	11.9999
CCMM	chr15:80189074-80189449(-)$1	375	231	235	11.9999
pfff	chr21:30442469-30442751(-)$1	282	107	111	11.9999
::::	chrX:53588777-53588986(-)$1	209	53	57	11.9999
dd[e	chr16:19726066-19726340(-)$1	274	23	27	11.9999
qqqq	chr6:144178791-144179094(+)$1	303	105	109	11.9999
eeee	chr9:100403743-100404009(+)$1	266	126	130	11.9999
cc::	chr17:7481044-7481275(+)$1	231	21	25	11.9999
cc::	chr7:150920924-150921211(-)$1	287	161	165	11.9999
====	chr1:207963496-207963703(+)$1	207	128	132	11.9999
hhhh	chr7:156745064-156745401(+)$1	337	42	46	11.9999
gggm	chr10:129904572-129904814(-)$1	242	5	9	11.9999
gg##	chr12:76449748-76449962(-)$1	214	32	36	11.9999
^^^^	chr1:25571683-25571893(-)$1	210	117	121	11.9999
KKDD	chr17:38282461-38282761(+)$1	300	20	24	11.9999
ssss	chr11:94180287-94180522(-)$1	235	7	11	11.9999
d]a>	chr7:43843308-43843547(+)$1	239	128	132	11.9999
:eee	chr21:34974438-34974756(-)$1	318	12	16	11.9999
iiii	chr17:8457177-8457422(-)$1	245	184	188	11.9999
IIII	chr6:30546024-30546259(+)$1	235	127	131	11.9999
6666	chr12:56510871-56511075(+)$1	204	108	112	11.9999
gg!!	chr1:45228121-45228365(+)$1	244	31	35	11.9999
iiii	chr5:176335429-176335712(-)$1	283	22	26	11.9999
::::	chr18:3253785-3254041(+)$1	256	104	108	11.9999
eedd	chr5:141353048-141353381(+)$1	333	113	117	11.9999
777f	chr11:65623080-65623295(-)$1	215	156	160	11.9999
:BBK	chr1:235345690-235346007(-)$1	317	6	10	11.9999
::::	chr11:67376062-67376293(+)$1	231	218	222	11.9999
rrrr	chr8:106431260-106431573(+)$1	313	142	146	11.9999
e444	chr1:153634760-153635115(-)$1	355	132	136	11.9999
!===	chr12:56716782-56717091(-)$1	309	154	158	11.9999
::::	chr12:122966383-122966620(-)$1	237	16	20	11.9999
::::	chr6:116966848-116967119(-)$1	271	52	56	11.9999
ee!!	chr12:6692401-6692619(-)$1	218	89	93	11.9999
nnnc	chr12:6690356-6690561(-)$1	205	5	9	11.9999
::::	chr14:24679776-24680074(-)$1	298	45	49	11.9999
###b	chr14:73563535-73563762(+)$1	227	85	89	11.9999
GGGG	chr3:64004442-64004708(-)$1	266	1	5	11.9999
hhhh	chr2:153519015-153519237(-)$1	222	72	76	11.9999
6666	chr1:245027463-245027681(-)$1	218	133	137	11.9999
:::e	chr1:174188157-174188449(+)$1	292	119	123	11.9999
oooo	chrX:153676999-153677204(+)$1	205	45	49	11.9999
$$$$	chr14:31588842-31589161(-)$1	319	91	95	11.9999
::::	chr22:24953610-24953870(+)$1	260	12	16	11.9999
EZZZ	chr2:54855984-54856264(+)$1	280	230	234	11.9999
22cc	chr1:186321108-186321330(-)$1	222	96	100	11.9999
ee99	chr1:40209393-40209698(+)$1	305	126	130	11.9999
::::	chr12:53295669-53295954(-)$1	285	19	23	11.9999
pppp	chr6:44218189-44218425(+)$1	236	10	14	11.9999
ZZZF	chr14:103807263-103807557(+)$1	294	186	190	11.9999
ddmm	chr2:217365962-217366173(+)$1	211	135	139	11.9999
oooo	chr14:102549290-102549506(-)$1	216	18	22	11.9999
dd44	chr14:102549306-102549524(-)$1	218	36	40	11.9999
cooo	chr3:47762108-47762325(-)$1	217	98	102	11.9999
::::	chr20:30385211-30385416(+)$1	205	0	4	11.9999
!bb!	chr7:148711963-148712231(-)$1	268	95	99	11.9999
eee>	chr4:56466590-56466797(-)$1	207	57	61	11.9999
nnnc	chr17:8402516-8402830(-)$1	314	52	56	11.9999
b[dd	chr20:33095399-33095711(+)$1	312	169	173	11.9999
GCCC	chr2:101622711-101622917(+)$1	206	10	14	11.9999
::::	chr9:101611260-101611555(+)$1	295	1	5	11.9999
cppp	chr13:103514629-103514991(+)$1	362	117	121	11.9999
fff:	chr1:24978823-24979128(+)$1	305	13	17	11.9999
HHHH	chr2:29001598-29001905(+)$1	307	20	24	11.9999
EEEE	chr1:85117544-85117782(-)$1	238	102	106	11.9999
+eee	chr17:34173993-34174268(+)$1	275	111	115	11.9999
DDDN	chrX:153196112-153196405(-)$1	293	2	6	11.9999
::::	chr4:110394108-110394418(+)$1	310	155	159	11.9999
::::	chr19:3618774-3619059(-)$1	285	97	101	11.9999
::::	chr12:56999541-56999811(-)$1	270	25	29	11.9999
hhhh	chr7:140404630-140404864(+)$1	234	70	74	11.9999
gggg	chr3:47730799-47731007(-)$1	208	45	49	11.9999
:eee	chr2:27684527-27684802(-)$1	275	97	101	11.9999
[ddd	chr10:73590869-73591108(-)$1	239	122	126	11.9999
:DDD	chr9:131277733-131278024(+)$1	291	1	5	11.9999
ddd!	chr10:71129263-71129482(+)$1	219	18	22	11.9999
f$$$	chr12:121783556-121783855(-)$1	299	111	115	11.9999
uuuu	chr1:45220321-45220549(+)$1	228	147	151	11.9999
KKEE	chr12:111160171-111160406(-)$1	235	69	73	11.9999

#DB
))))	chr7:158448874-158449135(-)$1	1	110	114	11.9999
((..	chr7:99008607-99008889(+)$1	1	52	56	11.9999
...)	chr3:33686161-33686499(-)$1	1	123	127	11.9999
))).	chr4:1746581-1746846(+)$1	1	25	29	11.9999
....	chr20:47682627-47682885(+)$1	1	1	5	11.9999
.(((	chr14:23792546-23792764(+)$1	1	59	63	11.9999
((..	chr7:91603010-91603245(+)$1	1	32	36	11.9999
((..	chr15:80189074-80189449(-)$1	1	231	235	11.9999
.)))	chr21:30442469-30442751(-)$1	1	107	111	11.9999
....	chrX:53588777-53588986(-)$1	1	53	57	11.9999
((.(	chr16:19726066-19726340(-)$1	1	23	27	11.9999
....	chr6:144178791-144179094(+)$1	1	105	109	11.9999
((((	chr9:100403743-100404009(+)$1	1	126	130	11.9999
))..	chr17:7481044-7481275(+)$1	1	21	25	11.9999
))..	chr7:150920924-150921211(-)$1	1	161	165	11.9999
((((	chr1:207963496-207963703(+)$1	1	128	132	11.9999
((((	chr7:156745064-156745401(+)$1	1	42	46	11.9999
(((.	chr10:129904572-129904814(-)$1	1	5	9	11.9999
((..	chr12:76449748-76449962(-)$1	1	32	36	11.9999
....	chr1:25571683-25571893(-)$1	1	117	121	11.9999
..((	chr17:38282461-38282761(+)$1	1	20	24	11.9999
....	chr11:94180287-94180522(-)$1	1	7	11	11.9999
).).	chr7:43843308-43843547(+)$1	1	128	132	11.9999
.(((	chr21:34974438-34974756(-)$1	1	12	16	11.9999
))))	chr17:8457177-8457422(-)$1	1	184	188	11.9999
))))	chr6:30546024-30546259(+)$1	1	127	131	11.9999
....	chr12:56510871-56511075(+)$1	1	108	112	11.9999
((..	chr1:45228121-45228365(+)$1	1	31	35	11.9999
))))	chr5:176335429-176335712(-)$1	1	22	26	11.9999
....	chr18:3253785-3254041(+)$1	1	104	108	11.9999
))))	chr5:141353048-141353381(+)$1	1	113	117	11.9999
...)	chr11:65623080-65623295(-)$1	1	156	160	11.9999
.((.	chr1:235345690-235346007(-)$1	1	6	10	11.9999
....	chr11:67376062-67376293(+)$1	1	218	222	11.9999
....	chr8:106431260-106431573(+)$1	1	142	146	11.9999
)...	chr1:153634760-153635115(-)$1	1	132	136	11.9999
.(((	chr12:56716782-56717091(-)$1	1	154	158	11.9999
....	chr12:122966383-122966620(-)$1	1	16	20	11.9999
....	chr6:116966848-116967119(-)$1	1	52	56	11.9999
((..	chr12:6692401-6692619(-)$1	1	89	93	11.9999
...)	chr12:6690356-6690561(-)$1	1	5	9	11.9999
....	chr14:24679776-24680074(-)$1	1	45	49	11.9999
...(	chr14:73563535-73563762(+)$1	1	85	89	11.9999
((((	chr3:64004442-64004708(-)$1	1	1	5	11.9999
((((	chr2:153519015-153519237(-)$1	1	72	76	11.9999
....	chr1:245027463-245027681(-)$1	1	133	137	11.9999
...(	chr1:174188157-174188449(+)$1	1	119	123	11.9999
....	chrX:153676999-153677204(+)$1	1	45	49	11.9999
....	chr14:31588842-31589161(-)$1	1	91	95	11.9999
....	chr22:24953610-24953870(+)$1	1	12	16	11.9999
)...	chr2:54855984-54856264(+)$1	1	230	234	11.9999
..))	chr1:186321108-186321330(-)$1	1	96	100	11.9999
))..	chr1:40209393-40209698(+)$1	1	126	130	11.9999
....	chr12:53295669-53295954(-)$1	1	19	23	11.9999
....	chr6:44218189-44218425(+)$1	1	10	14	11.9999
...)	chr14:103807263-103807557(+)$1	1	186	190	11.9999
((..	chr2:217365962-217366173(+)$1	1	135	139	11.9999
....	chr14:102549290-102549506(-)$1	1	18	22	11.9999
))..	chr14:102549306-102549524(-)$1	1	36	40	11.9999
(...	chr3:47762108-47762325(-)$1	1	98	102	11.9999
....	chr20:30385211-30385416(+)$1	1	0	4	11.9999
.((.	chr7:148711963-148712231(-)$1	1	95	99	11.9999
))).	chr4:56466590-56466797(-)$1	1	57	61	11.9999
...)	chr17:8402516-8402830(-)$1	1	52	56	11.9999
(.((	chr20:33095399-33095711(+)$1	1	169	173	11.9999
((((	chr2:101622711-101622917(+)$1	1	10	14	11.9999
....	chr9:101611260-101611555(+)$1	1	1	5	11.9999
(...	chr13:103514629-103514991(+)$1	1	117	121	11.9999
))).	chr1:24978823-24979128(+)$1	1	13	17	11.9999
((((	chr2:29001598-29001905(+)$1	1	20	24	11.9999
((((	chr1:85117544-85117782(-)$1	1	102	106	11.9999
.(((	chr17:34173993-34174268(+)$1	1	111	115	11.9999
(((.	chrX:153196112-153196405(-)$1	1	2	6	11.9999
....	chr4:110394108-110394418(+)$1	1	155	159	11.9999
....	chr19:3618774-3619059(-)$1	1	97	101	11.9999
....	chr12:56999541-56999811(-)$1	1	25	29	11.9999
((((	chr7:140404630-140404864(+)$1	1	70	74	11.9999
((((	chr3:47730799-47731007(-)$1	1	45	49	11.9999
.(((	chr2:27684527-27684802(-)$1	1	97	101	11.9999
.(((	chr10:73590869-73591108(-)$1	1	122	126	11.9999
.(((	chr9:131277733-131278024(+)$1	1	1	5	11.9999
(((.	chr10:71129263-71129482(+)$1	1	18	22	11.9999
(...	chr12:121783556-121783855(-)$1	1	111	115	11.9999
....	chr1:45220321-45220549(+)$1	1	147	151	11.9999
..((	chr12:111160171-111160406(-)$1	1	69	73	11.9999

#PSSM
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	
A : 0.96	a : 0.03	

#score	1019.9999999999998
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_CDS_m2_run2.nuc.txt

#NT
GCAGGGACAGGGCGG	chr16:89930105-89930372(+)$1	267	29	44	15.7547
GCGGCGGUGGggagg	chr12:19592497-19592816(+)$1	319	93	108	16.4150
GCUGGGGCUGGGGAU	chr3:50102403-50102659(+)$1	256	187	202	14.1509
GCUGGGGCUGGCGGG	chr9:130885816-130886090(-)$1	274	119	134	18.9622
GCGGGACCUUGGAGG	chr16:30390120-30390441(+)$1	321	175	190	16.7924
GCGGGAGCUGGCGCG	chr17:35969133-35969496(-)$1	363	135	150	17.2641
GAGGGGGCCGGGGUG	chr16:31202270-31202520(+)$1	250	103	118	18.6792
GCGCGGGCGGGGAGG	chr19:56599438-56599708(-)$1	270	234	249	20.4716
GUGGGGGCGGGGAGG	chr6:108279092-108279474(-)$1	382	129	144	23.3018
GUGGGAGGUUGGGGG	chr1:155658051-155658326(-)$1	275	126	141	16.6037
ACGGGCCCUGGGUGG	chr16:90028158-90028513(+)$1	355	213	228	16.4150
gcgggagcugggUGG	chr7:100136962-100137228(+)$1	266	105	120	25.5660
gcggGAGCAGCAUGG	chr19:6739606-6739893(+)$1	287	155	170	14.9999
GCUGGCGCUGGUGGG	chr17:72868821-72869070(-)$1	249	14	29	17.3584
GAGGGAGCGGGGCGG	chr11:61197163-61197414(-)$1	251	195	210	23.2075
GGGGGUGCGGGGAGG	chr19:36302987-36303256(-)$1	269	238	253	23.2075
GGGGGCCCUGGUGGG	chr6:30570014-30570310(-)$1	296	99	114	16.3207
GAGGGAGCUGUGGGG	chr22:50723218-50723447(-)$1	229	55	70	19.7169
gagggcggugggagg	chr16:30134300-30134638(-)$1	338	81	96	19.5283
GGGAGAGCUGGGAGG	chr3:184099622-184099907(+)$1	285	37	52	20.7547
GCGGGAGGUGGGGAG	chr16:16253238-16253484(-)$1	246	153	168	17.9245
gcgggcgccgggcgc	chr2:27255761-27256013(+)$1	252	10	25	18.2075
GGUAGGGCUGGGUGG	chr8:145150658-145150927(+)$1	269	29	44	18.5849
GCUGGUGCGGGACGG	chr19:1012154-1012426(-)$1	272	34	49	16.2264
ccuggggcggggcgg	chr22:51020659-51020975(-)$1	316	93	108	17.6415
GGGGGGGCUGGGGGG	chr19:39227791-39228032(-)$1	241	85	100	25.8490
CGGGGGGCGCGGGGG	chr7:73082306-73082595(+)$1	289	139	154	16.9811
GGGGGCUCUGGGUGG	chr1:110527519-110527854(+)$1	335	279	294	20.3773
GGGAGAGCCUGGUGG	chr2:241512998-241513331(+)$1	333	124	139	15.3773
GGGGGGGCGGGGGGG	chr17:55334037-55334262(+)$1	225	44	59	25.1886
ACUGGGGCUGGGUGA	chr2:71298636-71298928(+)$1	292	51	66	14.4339
GAGGGAGACGGGCGG	chr19:12845209-12845531(-)$1	322	70	85	18.3018
UCGGGUGAGGGGUGG	chr17:73900670-73900955(-)$1	285	62	77	16.0377
GAGGGGUCUGGGAGG	chr6:30525122-30525454(+)$1	332	107	122	20.1886
GGGGGUGGGGGGUGG	chr1:156347932-156348148(+)$1	216	25	40	20.4716
UGGGGAGCUGGGGGG	chr16:29912222-29912448(+)$1	226	198	213	21.2264
GGGGCAGCUGGGCUG	chr20:34220628-34220858(-)$1	230	125	140	15.9433
gcgggagcaggcggg	chr3:196730152-196730442(+)$1	290	101	116	19.7169
gccgggggcgggugg	chr8:30669829-30670045(-)$1	216	34	49	17.2641
GCGGGGGCGGCGCGG	chr17:70117861-70118129(+)$1	268	112	127	20.3773
GGGGGAGCAGGGCGA	chr9:117050634-117050886(+)$1	252	99	114	18.6792
GCAGGGUCUGGGUGG	chr9:139904716-139904992(-)$1	276	91	106	18.3962
guaggggcugggugc	chr17:41622764-41623040(+)$1	276	109	124	16.7924
GAGGGGGCGGGCAGG	chr22:31741455-31741759(-)$1	304	121	136	19.7169
GGGAGGGCUGGGUGG	chr16:4851215-4851483(-)$1	268	102	117	21.7924
GGGGGGGCCGGGGGG	chr21:45670835-45671093(+)$1	258	25	40	24.0566
CUGGGGGUGGGGUGG	chr16:89265088-89265382(-)$1	294	91	106	16.0377
GGGGGUGCUGGGGGC	chr19:42880749-42881015(+)$1	266	91	106	20.2830
GAGGGAGCGGGGCGG	chr11:61197092-61197363(-)$1	271	144	159	23.2075
GGGGGCGCGCGGUGG	chr20:42086910-42087152(+)$1	242	1	16	19.6226
GGCUGUGCUGGGCGG	chr6:3118972-3119305(+)$1	333	7	22	15.9433
GUGGGAGGGCGGAGG	chr20:43029925-43030177(+)$1	252	9	24	15.3773

#otherMatches

#Struct PSSM
BB{DDDD::iiiiii	chr1:156347948-156348173(+)$1	225	9	24	20.4716
hhhh[bbeeeee[ee	chr16:89930105-89930372(+)$1	267	29	44	15.7547
ddd]bb]bb]dddd]	chr12:19592497-19592816(+)$1	319	93	108	16.4150
eeeFFFFFFGGGGGG	chr3:50102403-50102659(+)$1	256	187	202	14.1509
gggggA{EEEEEA{H	chr9:130885816-130886090(-)$1	274	119	134	18.9622
oa]affffff4444g	chr16:30390120-30390441(+)$1	321	175	190	16.7924
[bb[aooooooa]bb	chr17:35969133-35969496(-)$1	363	135	150	17.2641
]dddd:hhhhhhhh[	chr16:31202270-31202520(+)$1	250	103	118	18.6792
hhh]bbDDDDa!!a!	chr19:56599438-56599708(-)$1	270	234	249	20.4716
ii"""ccc!!ccc[a	chr6:108279092-108279474(-)$1	382	129	144	23.3018
$$eeeee[=======	chr1:155658051-155658326(-)$1	275	126	141	16.6037
cc!!ddddnnnnndd	chr16:90028158-90028513(+)$1	355	213	228	16.4150
ooooooccc]fffff	chr7:100136962-100137228(+)$1	266	105	120	25.5660
fffff####a!!fff	chr19:6739606-6739893(+)$1	287	155	170	14.9999
{CCCFFFFFF{EEEE	chr17:72868821-72869070(-)$1	249	14	29	17.3584
YYBBYYDDDDFFFFF	chr11:61197163-61197414(-)$1	251	195	210	23.2075
33ffffff22bb22e	chr19:36302987-36303256(-)$1	269	238	253	23.2075
[ffffff[a[hhhhh	chr6:30570014-30570310(-)$1	296	99	114	16.3207
:::::::========	chr22:50723218-50723447(-)$1	229	55	70	19.7169
''''bbxxxxxxxxx	chr16:30134300-30134638(-)$1	338	81	96	19.5283
ddddd!!hhhhhhhh	chr3:184099622-184099907(+)$1	285	37	52	20.7547
fff22dddd]bb444	chr16:16253238-16253484(-)$1	246	153	168	17.9245
J::HHHHHHHH{DDD	chr2:27255761-27256013(+)$1	252	10	25	18.2075
{ALLLGGGGGGG{EE	chr8:145150658-145150927(+)$1	269	29	44	18.5849
ffmmmmffffff]bb	chr19:1012154-1012426(-)$1	272	34	49	16.2264
c22dddd]ffffffD	chr22:51020659-51020975(-)$1	316	93	108	17.6415
dd!!a[ffffff###	chr19:39227791-39228032(-)$1	241	85	100	25.8490
iii[ccca[bb[ccc	chr7:73082306-73082595(+)$1	289	139	154	16.9811
DYYCCCDDDDDDDD:	chr1:110527519-110527854(+)$1	335	279	294	20.3773
LFFFFFFbbmmmmbb	chr2:241512998-241513331(+)$1	333	124	139	15.3773
ee]iiiiiiiii]cc	chr17:55334037-55334262(+)$1	225	44	59	25.1886
]cccbb:cccooooo	chr2:71298636-71298928(+)$1	292	51	66	14.4339
gggggg22ddddiii	chr19:12845209-12845531(-)$1	322	70	85	18.3018
CC{CCC::ffffffc	chr17:73900670-73900955(-)$1	285	62	77	16.0377
bb[dddd[ccc[ccc	chr6:30525122-30525454(+)$1	332	107	122	20.1886
{HHHHHHHHiiiiii	chr1:156347932-156348148(+)$1	216	25	40	20.4716
c666666dddd::::	chr16:29912222-29912448(+)$1	226	198	213	21.2264
FJJJJJJJJJJJJJJ	chr20:34220628-34220858(-)$1	230	125	140	15.9433
]bb]cccCCCGGGGG	chr3:196730152-196730442(+)$1	290	101	116	19.7169
[dddd!!bb[a[avv	chr8:30669829-30670045(-)$1	216	34	49	17.2641
2eeeee:EEEEEYYE	chr17:70117861-70118129(+)$1	268	112	127	20.3773
ffffff333ccc]bb	chr9:117050634-117050886(+)$1	252	99	114	18.6792
ee::DDDDCCC{GGG	chr9:139904716-139904992(-)$1	276	91	106	18.3962
DDCCCJJJJJJJJJJ	chr17:41622764-41623040(+)$1	276	109	124	16.7924
bb]ggggggg333==	chr22:31741455-31741759(-)$1	304	121	136	19.7169
GGGFFFFFF:dddd!	chr16:4851215-4851483(-)$1	268	102	117	21.7924
AKKAKKBB{HHHHHH	chr21:45670835-45671093(+)$1	258	25	40	24.0566
ggg[bbbb!!ggggg	chr16:89265088-89265382(-)$1	294	91	106	16.0377
22ffffff22eeeee	chr19:42880749-42881015(+)$1	266	91	106	20.2830
uuuuuuuuuuiiiii	chr11:61197092-61197363(-)$1	271	144	159	23.2075
eeeee[abb[ccc[c	chr20:42086910-42087152(+)$1	242	1	16	19.6226
::::::DDDDCCCJJ	chr6:3118972-3119305(+)$1	333	7	22	15.9433
{CCC{A{A{A:ffff	chr20:43029925-43030177(+)$1	252	9	24	15.3773

#DB
((.((((..((((((	chr1:156347948-156348173(+)$1	1	9	24	20.4716
((((.(((((((.((	chr16:89930105-89930372(+)$1	1	29	44	15.7547
))).)).)).)))).	chr12:19592497-19592816(+)$1	1	93	108	16.4150
)))))))))))))))	chr3:50102403-50102659(+)$1	1	187	202	14.1509
)))))(.((((((.(	chr9:130885816-130886090(-)$1	1	119	134	18.9622
.).)))))))....)	chr16:30390120-30390441(+)$1	1	175	190	16.7924
.((.(......).))	chr17:35969133-35969496(-)$1	1	135	150	17.2641
.)))).((((((((.	chr16:31202270-31202520(+)$1	1	103	118	18.6792
))).))))))(..(.	chr19:56599438-56599708(-)$1	1	234	249	20.4716
((...(((..(((.(	chr6:108279092-108279474(-)$1	1	129	144	23.3018
..(((((.(((((((	chr1:155658051-155658326(-)$1	1	126	141	16.6037
((..((((.....))	chr16:90028158-90028513(+)$1	1	213	228	16.4150
......))).)))))	chr7:100136962-100137228(+)$1	1	105	120	25.5660
(((((....(..(((	chr19:6739606-6739893(+)$1	1	155	170	14.9999
.(((((((((.((((	chr17:72868821-72869070(-)$1	1	14	29	17.3584
..))..)))))))))	chr11:61197163-61197414(-)$1	1	195	210	23.2075
..))))))..))..)	chr19:36302987-36303256(-)$1	1	238	253	23.2075
.((((((.(.(((((	chr6:30570014-30570310(-)$1	1	99	114	16.3207
.......((((((((	chr22:50723218-50723447(-)$1	1	55	70	19.7169
....((.........	chr16:30134300-30134638(-)$1	1	81	96	19.5283
(((((..((((((((	chr3:184099622-184099907(+)$1	1	37	52	20.7547
)))..)))).))...	chr16:16253238-16253484(-)$1	1	153	168	17.9245
(..((((((((.(((	chr2:27255761-27256013(+)$1	1	10	25	18.2075
.(...(((((((.((	chr8:145150658-145150927(+)$1	1	29	44	18.5849
((....)))))).))	chr19:1012154-1012426(-)$1	1	34	49	16.2264
)..)))).))))))(	chr22:51020659-51020975(-)$1	1	93	108	17.6415
((..(.((((((...	chr19:39227791-39228032(-)$1	1	85	100	25.8490
(((.((((.((.(((	chr7:73082306-73082595(+)$1	1	139	154	16.9811
)..))))))))))).	chr1:110527519-110527854(+)$1	1	279	294	20.3773
.((((((((....))	chr2:241512998-241513331(+)$1	1	124	139	15.3773
)).))))))))).))	chr17:55334037-55334262(+)$1	1	44	59	25.1886
.))))).(((.....	chr2:71298636-71298928(+)$1	1	51	66	14.4339
))))))..))))(((	chr19:12845209-12845531(-)$1	1	70	85	18.3018
((.(((..(((((((	chr17:73900670-73900955(-)$1	1	62	77	16.0377
((.((((.(((.(((	chr6:30525122-30525454(+)$1	1	107	122	20.1886
.((((((((((((((	chr1:156347932-156348148(+)$1	1	25	40	20.4716
)......))))....	chr16:29912222-29912448(+)$1	1	198	213	21.2264
)))))))))))))))	chr20:34220628-34220858(-)$1	1	125	140	15.9433
.)).)))((((((((	chr3:196730152-196730442(+)$1	1	101	116	19.7169
.((((..((.(.(..	chr8:30669829-30670045(-)$1	1	34	49	17.2641
.))))).)))))..)	chr17:70117861-70118129(+)$1	1	112	127	20.3773
))))))...))).))	chr9:117050634-117050886(+)$1	1	99	114	18.6792
))..(((((((.(((	chr9:139904716-139904992(-)$1	1	91	106	18.3962
(((((((((((((((	chr17:41622764-41623040(+)$1	1	109	124	16.7924
)).)))))))...))	chr22:31741455-31741759(-)$1	1	121	136	19.7169
(((((((((.((((.	chr16:4851215-4851483(-)$1	1	102	117	21.7924
(..(..((.((((((	chr21:45670835-45671093(+)$1	1	25	40	24.0566
(((.((((..(((((	chr16:89265088-89265382(-)$1	1	91	106	16.0377
..))))))..)))))	chr19:42880749-42881015(+)$1	1	91	106	20.2830
..........)))))	chr11:61197092-61197363(-)$1	1	144	159	23.2075
(((((.(((.(((.(	chr20:42086910-42087152(+)$1	1	1	16	19.6226
......(((((((((	chr6:3118972-3119305(+)$1	1	7	22	15.9433
.(((.(.(.(.((((	chr20:43029925-43030177(+)$1	1	9	24	15.3773

#PSSM
G : 0.73	g : 0.13	A : 0.03	C : 0.03	U : 0.03	c : 0.01	
G : 0.35	C : 0.28	A : 0.13	c : 0.11	U : 0.07	a : 0.01	u : 0.01	
G : 0.67	U : 0.11	g : 0.09	A : 0.03	u : 0.01	c : 0.01	a : 0.01	C : 0.01	
G : 0.73	g : 0.15	A : 0.07	C : 0.01	U : 0.01	
G : 0.83	g : 0.13	C : 0.03	
G : 0.35	A : 0.28	U : 0.13	C : 0.09	g : 0.05	a : 0.03	c : 0.03	
G : 0.73	g : 0.13	C : 0.05	U : 0.05	A : 0.01	
C : 0.69	G : 0.09	c : 0.09	U : 0.03	g : 0.03	A : 0.03	
U : 0.41	G : 0.32	C : 0.07	A : 0.05	u : 0.05	c : 0.03	g : 0.01	a : 0.01	
G : 0.75	g : 0.13	U : 0.05	C : 0.05	
G : 0.79	g : 0.15	C : 0.03	U : 0.01	
G : 0.71	g : 0.13	C : 0.05	A : 0.03	U : 0.03	c : 0.01	
G : 0.28	U : 0.26	C : 0.16	A : 0.15	a : 0.03	c : 0.03	u : 0.03	g : 0.01	
G : 0.77	g : 0.13	A : 0.03	U : 0.03	C : 0.01	
G : 0.79	g : 0.09	c : 0.03	A : 0.03	U : 0.01	C : 0.01	

#score	1002.1698113207544
#seq	53
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_CDS_m1_run2.nuc.txt

#NT
UUUUCUUCAU	chr17:78310107-78310362(+)$1	255	209	219	17.5000
AUUUCUCCUU	chr1:197091328-197091588(-)$1	260	131	141	14.4444
GUUUCUUCUU	chr7:26236000-26236246(-)$1	246	84	94	17.7777
UUCUCUCCUU	chr1:1019491-1019808(-)$1	317	29	39	15.8333
UUUUGUUCUG	chr18:2700586-2700867(+)$1	281	130	140	16.3888
UUUUCUUCUC	chr14:104145831-104146108(+)$1	277	231	241	18.3333
UUCUCUUCUU	chr7:142962129-142962400(+)$1	271	209	219	19.1666
UUUUCAUUUU	chr5:86690674-86690930(-)$1	256	181	191	16.6666
UUCUCUCCUU	chr17:40659575-40659821(+)$1	246	92	102	15.8333
uuuuguuuuu	chr14:50292384-50292650(-)$1	266	95	105	18.8888
uuuuuuuuuu	chr3:50098912-50099160(+)$1	248	81	91	18.0555
UUUUUUUGUU	chr6:99852285-99852551(-)$1	266	138	148	16.6666
UUUUGUUCUU	chr1:224619047-224619302(-)$1	255	134	144	20.2777
UUUUCUUUUC	chr1:145440793-145441002(+)$1	209	95	105	16.9444
UUCUGUUCUU	chr5:81572033-81572287(-)$1	254	96	106	17.5000
UUUUCUucuu	chr6:36937541-36937800(-)$1	259	219	229	21.9444
UUUUCAUUUU	chr1:145439642-145439879(+)$1	237	115	125	16.6666

#otherMatches

#Struct PSSM
JJJJJJJJJZ	chr12:122618457-122618765(+)$1	308	277	287	18.8888
ffff####dd	chr17:78310107-78310362(+)$1	255	209	219	17.5000
:eeeee%%%%	chr1:197091328-197091588(-)$1	260	131	141	14.4444
==========	chr7:26236000-26236246(-)$1	246	84	94	17.7777
::::::::::	chr1:1019491-1019808(-)$1	317	29	39	15.8333
:::iiiiiii	chr18:2700586-2700867(+)$1	281	130	140	16.3888
>>>>>>>>>>	chr14:104145831-104146108(+)$1	277	231	241	18.3333
ggg!!ddddm	chr7:142962129-142962400(+)$1	271	209	219	19.1666
mmeeeee:::	chr5:86690674-86690930(-)$1	256	181	191	16.6666
qqqqqqccc2	chr17:40659575-40659821(+)$1	246	92	102	15.8333
==========	chr14:50292384-50292650(-)$1	266	95	105	18.8888
iiiiiii^^^	chr3:50098912-50099160(+)$1	248	81	91	18.0555
ddd]eeeee]	chr6:99852285-99852551(-)$1	266	138	148	16.6666
22========	chr1:224619047-224619302(-)$1	255	134	144	20.2777
333dddd:::	chr1:145440793-145441002(+)$1	209	95	105	16.9444
CCJJJJJJJJ	chr5:81572033-81572287(-)$1	254	96	106	17.5000
nnndddd]ee	chr6:36937541-36937800(-)$1	259	219	229	21.9444
^^^^^^^^^^	chr1:145439642-145439879(+)$1	237	115	125	16.6666

#DB
))))))))).	chr12:122618457-122618765(+)$1	1	277	287	18.8888
((((....((	chr17:78310107-78310362(+)$1	1	209	219	17.5000
.(((((....	chr1:197091328-197091588(-)$1	1	131	141	14.4444
))))))))))	chr7:26236000-26236246(-)$1	1	84	94	17.7777
..........	chr1:1019491-1019808(-)$1	1	29	39	15.8333
...(((((((	chr18:2700586-2700867(+)$1	1	130	140	16.3888
..........	chr14:104145831-104146108(+)$1	1	231	241	18.3333
(((..((((.	chr7:142962129-142962400(+)$1	1	209	219	19.1666
..)))))...	chr5:86690674-86690930(-)$1	1	181	191	16.6666
......))).	chr17:40659575-40659821(+)$1	1	92	102	15.8333
))))))))))	chr14:50292384-50292650(-)$1	1	95	105	18.8888
(((((((...	chr3:50098912-50099160(+)$1	1	81	91	18.0555
))).))))).	chr6:99852285-99852551(-)$1	1	138	148	16.6666
..))))))))	chr1:224619047-224619302(-)$1	1	134	144	20.2777
...))))...	chr1:145440793-145441002(+)$1	1	95	105	16.9444
))))))))))	chr5:81572033-81572287(-)$1	1	96	106	17.5000
...)))).))	chr6:36937541-36937800(-)$1	1	219	229	21.9444
..........	chr1:145439642-145439879(+)$1	1	115	125	16.6666

#PSSM
U : 0.72	u : 0.16	A : 0.05	G : 0.05	
U : 0.83	u : 0.16	
U : 0.61	C : 0.22	u : 0.16	
U : 0.83	u : 0.16	
C : 0.61	G : 0.16	g : 0.11	u : 0.05	U : 0.05	
U : 0.72	u : 0.16	A : 0.11	
U : 0.61	u : 0.22	C : 0.16	
C : 0.55	u : 0.16	U : 0.16	G : 0.05	c : 0.05	
U : 0.72	u : 0.22	A : 0.05	
U : 0.61	u : 0.22	C : 0.11	G : 0.05	

#score	317.77777777777794
#seq	18
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_UTR_m2_run1.nuc.txt

#NT
CCUUUCC	chr3:9517546-9517833(+)$1	287	17	24	13.5362
CCUCUCC	chr13:46700720-46700978(-)$1	258	142	149	17.3768
CCUCUAC	chr2:42578273-42578551(-)$1	278	159	166	13.4637
CCUCUGC	chr11:65120043-65120292(+)$1	249	97	104	13.6811
CCUCUAC	chr19:6441546-6441766(-)$1	220	206	213	13.4637
CCUCUGC	chr15:91073079-91073463(+)$1	384	96	103	13.6811
gcucucc	chr8:124222130-124222355(+)$1	225	60	67	13.3188
CCUCUGC	chrX:47088381-47088611(+)$1	230	208	215	13.6811
CCUCUUC	chr11:61734953-61735159(-)$1	206	165	172	13.4637
CUUCUCC	chr19:582844-583113(+)$1	269	191	198	13.3188
ACUCUCC	chr11:2904590-2904875(-)$1	285	161	168	13.2463
CCUCUCU	chr3:185209397-185209632(-)$1	235	144	151	12.9565
CCUCUGC	chr16:31104574-31104841(-)$1	267	89	96	13.6811
CUUCUCC	chr19:35770318-35770581(+)$1	263	67	74	13.3188
CCUCUGC	chr17:44108448-44108703(-)$1	255	131	138	13.6811
CCUCUUC	chr11:119176126-119176373(+)$1	247	19	26	13.4637
CCUCUCC	chr17:46005457-46005737(+)$1	280	128	135	17.3768
CCUUUCC	chr19:47223303-47223535(-)$1	232	16	23	13.5362
CUUCUCC	chr12:4411659-4411926(+)$1	267	83	90	13.3188
CCCCUCC	chr6:36936110-36936355(-)$1	245	37	44	13.2463
UCUCUCC	chr2:37327305-37327589(-)$1	284	266	273	13.4637
CCUCUCC	chr14:23595565-23595807(-)$1	242	40	47	17.3768
CCGCUCC	chr8:145538180-145538449(+)$1	269	117	124	13.0289
CGUCUCC	chr16:68225409-68225643(+)$1	234	50	57	13.0289
CCCCUCC	chr19:41811558-41811860(+)$1	302	260	267	13.2463
CUUCUCC	chr17:38324373-38324667(+)$1	294	67	74	13.3188
CCCCUCC	chr22:43014836-43015098(-)$1	262	103	110	13.2463
CCUCUCU	chr12:58215319-58215560(-)$1	241	192	199	12.9565
CCUCUCC	chr16:2569636-2569894(+)$1	258	94	101	17.3768
CCUUUCC	chr3:33909979-33910232(+)$1	253	63	70	13.5362
GCUCUCC	chr12:58114624-58114895(+)$1	271	18	25	13.3188
ACUCUCC	chr10:81073834-81074123(+)$1	289	94	101	13.2463
CCUCUGC	chr5:172359336-172359598(+)$1	262	244	251	13.6811
CCUCUCC	chr1:27212404-27212655(-)$1	251	65	72	17.3768
CCCCUCC	chr19:56154419-56154672(+)$1	253	178	185	13.2463
UCUCUCC	chr22:42301925-42302186(+)$1	261	48	55	13.4637
CCUCUCC	chr9:100745606-100745833(+)$1	227	170	177	17.3768
CCUCUCC	chr1:38462774-38462989(-)$1	215	156	163	17.3768
UCUCUCC	chr17:73842611-73842911(-)$1	300	20	27	13.4637
CCGCUCC	chr21:36164661-36165008(-)$1	347	73	80	13.0289
ccucucc	chr8:124221859-124222083(+)$1	224	181	188	17.3768
CCUCUCU	chr12:54069736-54069938(-)$1	202	73	80	12.9565
CCUGUCC	chr22:21304139-21304372(+)$1	233	31	38	13.1739
CCUCUCC	chr19:39876029-39876331(+)$1	302	105	112	17.3768
CAUCUCC	chr16:68225333-68225600(+)$1	267	66	73	13.1014
GCUCUCC	chr12:53861488-53861690(+)$1	202	112	119	13.3188
CUUCUCC	chr16:28845306-28845527(+)$1	221	101	108	13.3188
CCUUUCC	chrX:12994970-12995238(+)$1	268	127	134	13.5362
CCUGUCC	chr8:99057495-99057709(-)$1	214	56	63	13.1739
CCUCUCU	chr17:26880761-26880995(-)$1	234	135	142	12.9565
CAUCUCC	chr7:104753398-104753683(+)$1	285	184	191	13.1014
CCUUUCC	chr5:179157586-179157808(+)$1	222	30	37	13.5362
UCUCUCC	chr11:320700-320950(-)$1	250	162	169	13.4637
CCUCUCC	chr20:1145856-1146148(+)$1	292	125	132	17.3768
CCUCUCC	chr11:63526199-63526493(+)$1	294	265	272	17.3768
CCUCUCC	chr9:123963881-123964167(-)$1	286	164	171	17.3768
CCUCUCC	chr17:34052935-34053163(+)$1	228	85	92	17.3768
CCUCUCC	chr12:53859615-53859848(+)$1	233	178	185	17.3768
CCUCUUC	chr19:38872699-38872950(+)$1	251	123	130	13.4637
CCUCUAC	chr1:115249363-115249639(-)$1	276	124	131	13.4637
CCUUUCC	chr5:179156667-179156910(+)$1	243	17	24	13.5362
ccucucc	chr5:138629410-138629729(+)$1	319	54	61	17.3768
CCUCUCC	chr10:82278701-82278951(+)$1	250	210	217	17.3768
CCUUUCC	chr7:99705035-99705291(-)$1	256	27	34	13.5362
CCUCUCC	chr2:242168917-242169174(-)$1	257	178	185	17.3768
CCUCUCC	chr1:226107922-226108212(-)$1	290	244	251	17.3768
UCUCUCC	chr4:122738675-122738927(-)$1	252	99	106	13.4637
CCCCUCC	chr6:34213474-34213678(+)$1	204	32	39	13.2463

#otherMatches

#Struct PSSM
:::::::	chr3:9879640-9879907(-)$1	267	1	8	17.3768
FF:::BB	chr3:9517546-9517833(+)$1	287	17	24	13.5362
ggggg[d	chr13:46700720-46700978(-)$1	258	142	149	17.3768
fffff:E	chr2:42578273-42578551(-)$1	278	159	166	13.4637
ii$$$$$	chr11:65120043-65120292(+)$1	249	97	104	13.6811
:::::::	chr19:6441546-6441766(-)$1	220	206	213	13.4637
FFFF:ff	chr15:91073079-91073463(+)$1	384	96	103	13.6811
2bb]eee	chr8:124222130-124222355(+)$1	225	60	67	13.3188
ffff]ee	chrX:47088381-47088611(+)$1	230	208	215	13.6811
YEEEEEY	chr11:61734953-61735159(-)$1	206	165	172	13.4637
c333ddd	chr19:582844-583113(+)$1	269	191	198	13.3188
DDeeeee	chr11:2904590-2904875(-)$1	285	161	168	13.2463
::dddd[	chr3:185209397-185209632(-)$1	235	144	151	12.9565
^^^^^gg	chr16:31104574-31104841(-)$1	267	89	96	13.6811
EE::::d	chr19:35770318-35770581(+)$1	263	67	74	13.3188
66666cc	chr17:44108448-44108703(-)$1	255	131	138	13.6811
ee::ggg	chr11:119176126-119176373(+)$1	247	19	26	13.4637
e%%%%%%	chr17:46005457-46005737(+)$1	280	128	135	17.3768
ee!!hhh	chr19:47223303-47223535(-)$1	232	16	23	13.5362
KKGGGGG	chr12:4411659-4411926(+)$1	267	83	90	13.3188
eeee333	chr6:36936110-36936355(-)$1	245	37	44	13.2463
55555ee	chr2:37327305-37327589(-)$1	284	266	273	13.4637
oaeeeee	chr14:23595565-23595807(-)$1	242	40	47	17.3768
eeeee''	chr8:145538180-145538449(+)$1	269	117	124	13.0289
]bb]ccc	chr16:68225409-68225643(+)$1	234	50	57	13.0289
d$$$$$e	chr19:41811558-41811860(+)$1	302	260	267	13.2463
sssbb88	chr17:38324373-38324667(+)$1	294	67	74	13.3188
C::::::	chr22:43014836-43015098(-)$1	262	103	110	13.2463
etttttt	chr12:58215319-58215560(-)$1	241	192	199	12.9565
^^^^^^^	chr16:2569636-2569894(+)$1	258	94	101	17.3768
HHHHHH{	chr3:33909979-33910232(+)$1	253	63	70	13.5362
f%%%%%%	chr12:58114624-58114895(+)$1	271	18	25	13.3188
:::gggg	chr10:81073834-81074123(+)$1	289	94	101	13.2463
[eeeeem	chr5:172359336-172359598(+)$1	262	244	251	13.6811
ggggg::	chr1:27212404-27212655(-)$1	251	65	72	17.3768
D::::::	chr19:56154419-56154672(+)$1	253	178	185	13.2463
$$bbmmm	chr22:42301925-42302186(+)$1	261	48	55	13.4637
ooooddd	chr9:100745606-100745833(+)$1	227	170	177	17.3768
DD:::::	chr1:38462774-38462989(-)$1	215	156	163	17.3768
:::DDDD	chr17:73842611-73842911(-)$1	300	20	27	13.4637
^^bb:::	chr21:36164661-36165008(-)$1	347	73	80	13.0289
IIIII::	chr8:124221859-124222083(+)$1	224	181	188	17.3768
bb55555	chr12:54069736-54069938(-)$1	202	73	80	12.9565
c"""eee	chr22:21304139-21304372(+)$1	233	31	38	13.1739
ccbb22d	chr19:39876029-39876331(+)$1	302	105	112	17.3768
cc::ddd	chr16:68225333-68225600(+)$1	267	66	73	13.1014
"""ffff	chr12:53861488-53861690(+)$1	202	112	119	13.3188
BB}DDDD	chr16:28845306-28845527(+)$1	221	101	108	13.3188
:ffffff	chrX:12994970-12995238(+)$1	268	127	134	13.5362
ggggg]e	chr8:99057495-99057709(-)$1	214	56	63	13.1739
ffffff:	chr17:26880761-26880995(-)$1	234	135	142	12.9565
wwwwwww	chr7:104753398-104753683(+)$1	285	184	191	13.1014
eeeelll	chr5:179157586-179157808(+)$1	222	30	37	13.5362
G}EEEEE	chr11:320700-320950(-)$1	250	162	169	13.4637
:::::::	chr20:1145856-1146148(+)$1	292	125	132	17.3768
IIIIII?	chr11:63526199-63526493(+)$1	294	265	272	17.3768
EEEE:::	chr9:123963881-123964167(-)$1	286	164	171	17.3768
mmmmddd	chr17:34052935-34053163(+)$1	228	85	92	17.3768
777bb22	chr12:53859615-53859848(+)$1	233	178	185	17.3768
ccc:FFF	chr19:38872699-38872950(+)$1	251	123	130	13.4637
ffffff!	chr1:115249363-115249639(-)$1	276	124	131	13.4637
ttttttt	chr5:179156667-179156910(+)$1	243	17	24	13.5362
vvvvvvv	chr5:138629410-138629729(+)$1	319	54	61	17.3768
ddd:::B	chr10:82278701-82278951(+)$1	250	210	217	17.3768
=======	chr7:99705035-99705291(-)$1	256	27	34	13.5362
BB::GGG	chr2:242168917-242169174(-)$1	257	178	185	17.3768
ggyyyyy	chr1:226107922-226108212(-)$1	290	244	251	17.3768
===wwww	chr4:122738675-122738927(-)$1	252	99	106	13.4637
:::::::	chr6:34213474-34213678(+)$1	204	32	39	13.2463

#DB
.......	chr3:9879640-9879907(-)$1	1	1	8	17.3768
((...((	chr3:9517546-9517833(+)$1	1	17	24	13.5362
(((((.(	chr13:46700720-46700978(-)$1	1	142	149	17.3768
))))).)	chr2:42578273-42578551(-)$1	1	159	166	13.4637
((.....	chr11:65120043-65120292(+)$1	1	97	104	13.6811
.......	chr19:6441546-6441766(-)$1	1	206	213	13.4637
((((.((	chr15:91073079-91073463(+)$1	1	96	103	13.6811
.)).)))	chr8:124222130-124222355(+)$1	1	60	67	13.3188
)))).))	chrX:47088381-47088611(+)$1	1	208	215	13.6811
.))))).	chr11:61734953-61735159(-)$1	1	165	172	13.4637
)...)))	chr19:582844-583113(+)$1	1	191	198	13.3188
))(((((	chr11:2904590-2904875(-)$1	1	161	168	13.2463
..((((.	chr3:185209397-185209632(-)$1	1	144	151	12.9565
.....))	chr16:31104574-31104841(-)$1	1	89	96	13.6811
((....(	chr19:35770318-35770581(+)$1	1	67	74	13.3188
.....))	chr17:44108448-44108703(-)$1	1	131	138	13.6811
))..(((	chr11:119176126-119176373(+)$1	1	19	26	13.4637
(......	chr17:46005457-46005737(+)$1	1	128	135	17.3768
((..(((	chr19:47223303-47223535(-)$1	1	16	23	13.5362
..(((((	chr12:4411659-4411926(+)$1	1	83	90	13.3188
))))...	chr6:36936110-36936355(-)$1	1	37	44	13.2463
.....))	chr2:37327305-37327589(-)$1	1	266	273	13.4637
.))))))	chr14:23595565-23595807(-)$1	1	40	47	17.3768
(((((..	chr8:145538180-145538449(+)$1	1	117	124	13.0289
.)).)))	chr16:68225409-68225643(+)$1	1	50	57	13.0289
(.....(	chr19:41811558-41811860(+)$1	1	260	267	13.2463
...))..	chr17:38324373-38324667(+)$1	1	67	74	13.3188
(......	chr22:43014836-43015098(-)$1	1	103	110	13.2463
(......	chr12:58215319-58215560(-)$1	1	192	199	12.9565
.......	chr16:2569636-2569894(+)$1	1	94	101	17.3768
((((((.	chr3:33909979-33910232(+)$1	1	63	70	13.5362
(......	chr12:58114624-58114895(+)$1	1	18	25	13.3188
...((((	chr10:81073834-81074123(+)$1	1	94	101	13.2463
.(((((.	chr5:172359336-172359598(+)$1	1	244	251	13.6811
)))))..	chr1:27212404-27212655(-)$1	1	65	72	17.3768
(......	chr19:56154419-56154672(+)$1	1	178	185	13.2463
..((...	chr22:42301925-42302186(+)$1	1	48	55	13.4637
....)))	chr9:100745606-100745833(+)$1	1	170	177	17.3768
)).....	chr1:38462774-38462989(-)$1	1	156	163	17.3768
...((((	chr17:73842611-73842911(-)$1	1	20	27	13.4637
..))...	chr21:36164661-36165008(-)$1	1	73	80	13.0289
)))))..	chr8:124221859-124222083(+)$1	1	181	188	17.3768
)).....	chr12:54069736-54069938(-)$1	1	73	80	12.9565
(...(((	chr22:21304139-21304372(+)$1	1	31	38	13.1739
))))..)	chr19:39876029-39876331(+)$1	1	105	112	17.3768
))..(((	chr16:68225333-68225600(+)$1	1	66	73	13.1014
...((((	chr12:53861488-53861690(+)$1	1	112	119	13.3188
)).))))	chr16:28845306-28845527(+)$1	1	101	108	13.3188
.((((((	chrX:12994970-12995238(+)$1	1	127	134	13.5362
))))).)	chr8:99057495-99057709(-)$1	1	56	63	13.1739
)))))).	chr17:26880761-26880995(-)$1	1	135	142	12.9565
.......	chr7:104753398-104753683(+)$1	1	184	191	13.1014
((((...	chr5:179157586-179157808(+)$1	1	30	37	13.5362
).)))))	chr11:320700-320950(-)$1	1	162	169	13.4637
.......	chr20:1145856-1146148(+)$1	1	125	132	17.3768
)))))).	chr11:63526199-63526493(+)$1	1	265	272	17.3768
))))...	chr9:123963881-123964167(-)$1	1	164	171	17.3768
....)))	chr17:34052935-34053163(+)$1	1	85	92	17.3768
...))..	chr12:53859615-53859848(+)$1	1	178	185	17.3768
))).(((	chr19:38872699-38872950(+)$1	1	123	130	13.4637
((((((.	chr1:115249363-115249639(-)$1	1	124	131	13.4637
.......	chr5:179156667-179156910(+)$1	1	17	24	13.5362
.......	chr5:138629410-138629729(+)$1	1	54	61	17.3768
)))...)	chr10:82278701-82278951(+)$1	1	210	217	17.3768
)))))))	chr7:99705035-99705291(-)$1	1	27	34	13.5362
))..(((	chr2:242168917-242169174(-)$1	1	178	185	17.3768
((.....	chr1:226107922-226108212(-)$1	1	244	251	17.3768
(((....	chr4:122738675-122738927(-)$1	1	99	106	13.4637
.......	chr6:34213474-34213678(+)$1	1	32	39	13.2463

#PSSM
C : 0.82	U : 0.07	A : 0.02	G : 0.02	c : 0.02	g : 0.01	
C : 0.84	U : 0.07	c : 0.04	A : 0.02	G : 0.01	
U : 0.85	C : 0.07	u : 0.04	G : 0.02	
C : 0.82	U : 0.10	c : 0.04	G : 0.02	
U : 0.95	u : 0.04	
C : 0.78	G : 0.08	A : 0.04	c : 0.04	U : 0.04	
C : 0.89	U : 0.05	c : 0.04	

#score	997.8405797101436
#seq	69
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_CDS_m3_run2.nuc.txt

#NT
UGA	chr11:17096903-17097199(-)$1	296	0	3	9.0000
UGA	chr15:44085987-44086282(+)$1	295	106	109	9.0000
UGA	chr20:57568642-57568968(+)$1	326	38	41	9.0000
UGA	chr14:96998670-96998961(+)$1	291	13	16	9.0000
UGA	chr4:74301910-74302116(+)$1	206	16	19	9.0000
UGA	chr17:37009252-37009459(-)$1	207	12	15	9.0000
UGA	chr4:166418658-166418903(+)$1	245	7	10	9.0000
UGA	chr2:85823689-85824000(+)$1	311	42	45	9.0000
UGA	chr11:70265873-70266133(+)$1	260	48	51	9.0000
UGA	chr2:170668193-170668461(+)$1	268	178	181	9.0000
UGA	chr2:198284951-198285222(-)$1	271	6	9	9.0000
UGA	chr11:61572016-61572282(-)$1	266	1	4	9.0000
UGA	chr19:9940574-9940845(+)$1	271	3	6	9.0000
UGA	chr17:56082986-56083244(-)$1	258	33	36	9.0000
UGA	chr12:69746909-69747122(+)$1	213	152	155	9.0000
UGA	chr4:74321309-74321518(+)$1	209	73	76	9.0000
UGA	chr14:97000813-97001047(+)$1	234	37	40	9.0000
UGA	chr17:36871915-36872218(+)$1	303	5	8	9.0000
UGA	chr11:33163020-33163287(-)$1	267	11	14	9.0000
UGA	chr4:78739996-78740349(-)$1	353	60	63	9.0000
UGA	chr4:26431509-26431771(+)$1	262	44	47	9.0000
UGA	chr19:10794554-10794821(+)$1	267	115	118	9.0000
UGA	chr16:56973980-56974238(+)$1	258	8	11	9.0000
UGA	chr3:50098915-50099160(+)$1	245	1	4	9.0000
UGA	chr11:17153282-17153580(-)$1	298	12	15	9.0000
UGA	chr17:62496623-62496872(-)$1	249	12	15	9.0000
UGA	chr2:148695662-148695945(-)$1	283	19	22	9.0000
UGA	chr12:69746941-69747182(+)$1	241	120	123	9.0000
UGA	chr8:101717138-101717361(-)$1	223	45	48	9.0000
UGA	chr1:33146018-33146294(+)$1	276	30	33	9.0000
UGA	chr15:85213072-85213393(-)$1	321	44	47	9.0000
UGA	chr17:42398618-42398889(-)$1	271	5	8	9.0000
UGA	chr15:64430209-64430495(+)$1	286	1	4	9.0000
UGA	chr19:45452360-45452631(+)$1	271	84	87	9.0000
UGA	chr10:101563802-101564104(+)$1	302	25	28	9.0000
UGA	chr1:33252379-33252660(-)$1	281	4	7	9.0000
UGA	chr20:2637082-2637367(+)$1	285	140	143	9.0000
UGA	chr4:95376457-95376734(+)$1	277	64	67	9.0000
UGA	chr6:24291049-24291291(-)$1	242	12	15	9.0000
UGA	chr17:39846346-39846612(+)$1	266	19	22	9.0000
UGA	chr9:86584165-86584402(-)$1	237	49	52	9.0000
UGA	chr19:2230435-2230686(+)$1	251	8	11	9.0000
UGA	chrX:128582142-128582400(-)$1	258	18	21	9.0000
UGA	chr4:74321281-74321495(+)$1	214	101	104	9.0000
UGA	chr4:39459823-39460087(-)$1	264	29	32	9.0000
UGA	chr2:44184480-44184753(-)$1	273	23	26	9.0000
UGA	chr3:42660488-42660764(+)$1	276	104	107	9.0000
UGA	chr4:155533582-155533791(-)$1	209	31	34	9.0000
UGA	chr10:103557545-103557823(-)$1	278	243	246	9.0000
UGA	chr4:74286708-74286911(+)$1	203	9	12	9.0000
UGA	chr1:78425821-78426115(-)$1	294	151	154	9.0000
UGA	chr17:48827968-48828209(+)$1	241	14	17	9.0000
UGA	chr2:223773510-223773730(+)$1	220	14	17	9.0000
UGA	chr20:5159478-5159740(+)$1	262	20	23	9.0000
UGA	chr17:37009850-37010070(-)$1	220	24	27	9.0000
UGA	chr19:13054527-13054781(+)$1	254	15	18	9.0000
UGA	chr2:219093435-219093738(+)$1	303	79	82	9.0000
UGA	chr22:24439210-24439471(+)$1	261	52	55	9.0000
UGA	chr6:28872170-28872417(-)$1	247	14	17	9.0000
UGA	chr4:74321319-74321546(+)$1	227	63	66	9.0000
UGA	chr10:70516163-70516430(+)$1	267	49	52	9.0000
UGA	chr14:24769846-24770154(+)$1	308	83	86	9.0000
UGA	chr2:70452412-70452649(-)$1	237	23	26	9.0000
UGA	chr4:155533591-155533812(-)$1	221	3	6	9.0000
UGA	chr12:12976134-12976430(+)$1	296	27	30	9.0000
uga	chr19:13054627-13054874(+)$1	247	6	9	9.0000
uga	chr14:31067517-31067806(+)$1	289	18	21	9.0000
UGA	chr11:61188479-61188748(-)$1	269	26	29	9.0000
UGA	chr2:86360303-86360600(+)$1	297	14	17	9.0000
UGA	chr2:114476679-114476941(-)$1	262	13	16	9.0000
UGA	chr14:73566372-73566623(+)$1	251	45	48	9.0000
UGA	chr20:43031159-43031456(+)$1	297	27	30	9.0000
UGA	chr4:74321295-74321509(+)$1	214	87	90	9.0000
uga	chr19:13054581-13054827(+)$1	246	52	55	9.0000
UGA	chr12:72004233-72004553(-)$1	320	147	150	9.0000
UGA	chr16:28847404-28847664(+)$1	260	40	43	9.0000
UGA	chr12:53860997-53861244(+)$1	247	8	11	9.0000
UGA	chr4:74321268-74321481(+)$1	213	114	117	9.0000
UGA	chr4:107168340-107168629(-)$1	289	18	21	9.0000
UGA	chr14:23239357-23239615(+)$1	258	122	125	9.0000
UGA	chr4:110661921-110662157(-)$1	236	54	57	9.0000
UGA	chr9:95013915-95014201(-)$1	286	36	39	9.0000
UGA	chr4:74301916-74302147(+)$1	231	10	13	9.0000
UGA	chr18:33744406-33744677(+)$1	271	113	116	9.0000
UGA	chr9:19126204-19126479(-)$1	275	10	13	9.0000
UGA	chr10:121336467-121336718(-)$1	251	15	18	9.0000
UGA	chr17:41622529-41622805(+)$1	276	148	151	9.0000
UGA	chr2:58389959-58390236(-)$1	277	22	25	9.0000
uga	chr20:62364331-62364672(+)$1	341	45	48	9.0000
UGA	chr4:155533456-155533688(-)$1	232	73	76	9.0000
UGA	chr16:3117327-3117588(+)$1	261	12	15	9.0000
UGA	chr6:31625410-31625664(+)$1	254	39	42	9.0000
UGA	chr2:242276811-242277092(+)$1	281	9	12	9.0000
UGA	chr6:142630669-142630952(+)$1	283	149	152	9.0000
UGA	chr12:69746922-69747141(+)$1	219	139	142	9.0000
UGA	chr5:42807000-42807249(-)$1	249	62	65	9.0000
UGA	chr4:120221389-120221603(-)$1	214	1	4	9.0000

#otherMatches

#Struct PSSM
iii	chr13:98654732-98655036(+)$1	304	15	18	9.0000
:::	chr11:17096903-17097199(-)$1	296	0	3	9.0000
EEE	chr15:44085987-44086282(+)$1	295	106	109	9.0000
mmm	chr20:57568642-57568968(+)$1	326	38	41	9.0000
ddq	chr14:96998670-96998961(+)$1	291	13	16	9.0000
hhh	chr4:74301910-74302116(+)$1	206	16	19	9.0000
{BB	chr17:37009252-37009459(-)$1	207	12	15	9.0000
ggg	chr4:166418658-166418903(+)$1	245	7	10	9.0000
eee	chr2:85823689-85824000(+)$1	311	42	45	9.0000
!cc	chr11:70265873-70266133(+)$1	260	48	51	9.0000
hhh	chr2:170668193-170668461(+)$1	268	178	181	9.0000
ddd	chr2:198284951-198285222(-)$1	271	6	9	9.0000
:::	chr11:61572016-61572282(-)$1	266	1	4	9.0000
DDD	chr19:9940574-9940845(+)$1	271	3	6	9.0000
:::	chr17:56082986-56083244(-)$1	258	33	36	9.0000
bb!	chr12:69746909-69747122(+)$1	213	152	155	9.0000
bb3	chr4:74321309-74321518(+)$1	209	73	76	9.0000
qqq	chr14:97000813-97001047(+)$1	234	37	40	9.0000
ccm	chr17:36871915-36872218(+)$1	303	5	8	9.0000
:::	chr11:33163020-33163287(-)$1	267	11	14	9.0000
mmm	chr4:78739996-78740349(-)$1	353	60	63	9.0000
HHH	chr4:26431509-26431771(+)$1	262	44	47	9.0000
ncc	chr19:10794554-10794821(+)$1	267	115	118	9.0000
MMM	chr16:56973980-56974238(+)$1	258	8	11	9.0000
:::	chr3:50098915-50099160(+)$1	245	1	4	9.0000
:cc	chr11:17153282-17153580(-)$1	298	12	15	9.0000
HHH	chr17:62496623-62496872(-)$1	249	12	15	9.0000
HHH	chr2:148695662-148695945(-)$1	283	19	22	9.0000
ddd	chr12:69746941-69747182(+)$1	241	120	123	9.0000
m==	chr8:101717138-101717361(-)$1	223	45	48	9.0000
BBJ	chr1:33146018-33146294(+)$1	276	30	33	9.0000
^^^	chr15:85213072-85213393(-)$1	321	44	47	9.0000
uuu	chr17:42398618-42398889(-)$1	271	5	8	9.0000
:::	chr15:64430209-64430495(+)$1	286	1	4	9.0000
[cc	chr19:45452360-45452631(+)$1	271	84	87	9.0000
cc:	chr10:101563802-101564104(+)$1	302	25	28	9.0000
GGG	chr1:33252379-33252660(-)$1	281	4	7	9.0000
gdd	chr20:2637082-2637367(+)$1	285	140	143	9.0000
cc]	chr4:95376457-95376734(+)$1	277	64	67	9.0000
EKK	chr6:24291049-24291291(-)$1	242	12	15	9.0000
ee#	chr17:39846346-39846612(+)$1	266	19	22	9.0000
hhh	chr9:86584165-86584402(-)$1	237	49	52	9.0000
A{J	chr19:2230435-2230686(+)$1	251	8	11	9.0000
eee	chrX:128582142-128582400(-)$1	258	18	21	9.0000
bb3	chr4:74321281-74321495(+)$1	214	101	104	9.0000
ffn	chr4:39459823-39460087(-)$1	264	29	32	9.0000
iii	chr2:44184480-44184753(-)$1	273	23	26	9.0000
eee	chr3:42660488-42660764(+)$1	276	104	107	9.0000
eee	chr4:155533582-155533791(-)$1	209	31	34	9.0000
fff	chr10:103557545-103557823(-)$1	278	243	246	9.0000
lll	chr4:74286708-74286911(+)$1	203	9	12	9.0000
eee	chr1:78425821-78426115(-)$1	294	151	154	9.0000
{BB	chr17:48827968-48828209(+)$1	241	14	17	9.0000
III	chr2:223773510-223773730(+)$1	220	14	17	9.0000
eee	chr20:5159478-5159740(+)$1	262	20	23	9.0000
:ee	chr17:37009850-37010070(-)$1	220	24	27	9.0000
:::	chr19:13054527-13054781(+)$1	254	15	18	9.0000
ggg	chr2:219093435-219093738(+)$1	303	79	82	9.0000
ooo	chr22:24439210-24439471(+)$1	261	52	55	9.0000
:EE	chr6:28872170-28872417(-)$1	247	14	17	9.0000
bb3	chr4:74321319-74321546(+)$1	227	63	66	9.0000
GGG	chr10:70516163-70516430(+)$1	267	49	52	9.0000
dd!	chr14:24769846-24770154(+)$1	308	83	86	9.0000
NGG	chr2:70452412-70452649(-)$1	237	23	26	9.0000
DDD	chr4:155533591-155533812(-)$1	221	3	6	9.0000
fff	chr12:12976134-12976430(+)$1	296	27	30	9.0000
KBB	chr19:13054627-13054874(+)$1	247	6	9	9.0000
gg"	chr14:31067517-31067806(+)$1	289	18	21	9.0000
hhh	chr11:61188479-61188748(-)$1	269	26	29	9.0000
hh[	chr2:86360303-86360600(+)$1	297	14	17	9.0000
[ee	chr2:114476679-114476941(-)$1	262	13	16	9.0000
eee	chr14:73566372-73566623(+)$1	251	45	48	9.0000
odd	chr20:43031159-43031456(+)$1	297	27	30	9.0000
eee	chr4:74321295-74321509(+)$1	214	87	90	9.0000
BB{	chr19:13054581-13054827(+)$1	246	52	55	9.0000
mii	chr12:72004233-72004553(-)$1	320	147	150	9.0000
dd:	chr16:28847404-28847664(+)$1	260	40	43	9.0000
BBK	chr12:53860997-53861244(+)$1	247	8	11	9.0000
bb3	chr4:74321268-74321481(+)$1	213	114	117	9.0000
ooo	chr4:107168340-107168629(-)$1	289	18	21	9.0000
FFF	chr14:23239357-23239615(+)$1	258	122	125	9.0000
sss	chr4:110661921-110662157(-)$1	236	54	57	9.0000
iii	chr9:95013915-95014201(-)$1	286	36	39	9.0000
hhh	chr4:74301916-74302147(+)$1	231	10	13	9.0000
ccc	chr18:33744406-33744677(+)$1	271	113	116	9.0000
DDD	chr9:19126204-19126479(-)$1	275	10	13	9.0000
GGG	chr10:121336467-121336718(-)$1	251	15	18	9.0000
555	chr17:41622529-41622805(+)$1	276	148	151	9.0000
DD{	chr2:58389959-58390236(-)$1	277	22	25	9.0000
ooo	chr20:62364331-62364672(+)$1	341	45	48	9.0000
^^^	chr4:155533456-155533688(-)$1	232	73	76	9.0000
hhh	chr16:3117327-3117588(+)$1	261	12	15	9.0000
KDD	chr6:31625410-31625664(+)$1	254	39	42	9.0000
ddn	chr2:242276811-242277092(+)$1	281	9	12	9.0000
ggg	chr6:142630669-142630952(+)$1	283	149	152	9.0000
:ii	chr12:69746922-69747141(+)$1	219	139	142	9.0000
5ff	chr5:42807000-42807249(-)$1	249	62	65	9.0000
:::	chr4:120221389-120221603(-)$1	214	1	4	9.0000

#DB
(((	chr13:98654732-98655036(+)$1	1	15	18	9.0000
...	chr11:17096903-17097199(-)$1	1	0	3	9.0000
)))	chr15:44085987-44086282(+)$1	1	106	109	9.0000
...	chr20:57568642-57568968(+)$1	1	38	41	9.0000
((.	chr14:96998670-96998961(+)$1	1	13	16	9.0000
(((	chr4:74301910-74302116(+)$1	1	16	19	9.0000
.((	chr17:37009252-37009459(-)$1	1	12	15	9.0000
(((	chr4:166418658-166418903(+)$1	1	7	10	9.0000
(((	chr2:85823689-85824000(+)$1	1	42	45	9.0000
.((	chr11:70265873-70266133(+)$1	1	48	51	9.0000
)))	chr2:170668193-170668461(+)$1	1	178	181	9.0000
(((	chr2:198284951-198285222(-)$1	1	6	9	9.0000
...	chr11:61572016-61572282(-)$1	1	1	4	9.0000
(((	chr19:9940574-9940845(+)$1	1	3	6	9.0000
...	chr17:56082986-56083244(-)$1	1	33	36	9.0000
((.	chr12:69746909-69747122(+)$1	1	152	155	9.0000
)).	chr4:74321309-74321518(+)$1	1	73	76	9.0000
...	chr14:97000813-97001047(+)$1	1	37	40	9.0000
((.	chr17:36871915-36872218(+)$1	1	5	8	9.0000
...	chr11:33163020-33163287(-)$1	1	11	14	9.0000
...	chr4:78739996-78740349(-)$1	1	60	63	9.0000
(((	chr4:26431509-26431771(+)$1	1	44	47	9.0000
.))	chr19:10794554-10794821(+)$1	1	115	118	9.0000
...	chr16:56973980-56974238(+)$1	1	8	11	9.0000
...	chr3:50098915-50099160(+)$1	1	1	4	9.0000
.((	chr11:17153282-17153580(-)$1	1	12	15	9.0000
(((	chr17:62496623-62496872(-)$1	1	12	15	9.0000
(((	chr2:148695662-148695945(-)$1	1	19	22	9.0000
(((	chr12:69746941-69747182(+)$1	1	120	123	9.0000
.))	chr8:101717138-101717361(-)$1	1	45	48	9.0000
(((	chr1:33146018-33146294(+)$1	1	30	33	9.0000
...	chr15:85213072-85213393(-)$1	1	44	47	9.0000
...	chr17:42398618-42398889(-)$1	1	5	8	9.0000
...	chr15:64430209-64430495(+)$1	1	1	4	9.0000
.((	chr19:45452360-45452631(+)$1	1	84	87	9.0000
)).	chr10:101563802-101564104(+)$1	1	25	28	9.0000
(((	chr1:33252379-33252660(-)$1	1	4	7	9.0000
)))	chr20:2637082-2637367(+)$1	1	140	143	9.0000
)).	chr4:95376457-95376734(+)$1	1	64	67	9.0000
(..	chr6:24291049-24291291(-)$1	1	12	15	9.0000
((.	chr17:39846346-39846612(+)$1	1	19	22	9.0000
)))	chr9:86584165-86584402(-)$1	1	49	52	9.0000
(.(	chr19:2230435-2230686(+)$1	1	8	11	9.0000
)))	chrX:128582142-128582400(-)$1	1	18	21	9.0000
)).	chr4:74321281-74321495(+)$1	1	101	104	9.0000
((.	chr4:39459823-39460087(-)$1	1	29	32	9.0000
(((	chr2:44184480-44184753(-)$1	1	23	26	9.0000
)))	chr3:42660488-42660764(+)$1	1	104	107	9.0000
)))	chr4:155533582-155533791(-)$1	1	31	34	9.0000
)))	chr10:103557545-103557823(-)$1	1	243	246	9.0000
...	chr4:74286708-74286911(+)$1	1	9	12	9.0000
(((	chr1:78425821-78426115(-)$1	1	151	154	9.0000
.((	chr17:48827968-48828209(+)$1	1	14	17	9.0000
(((	chr2:223773510-223773730(+)$1	1	14	17	9.0000
(((	chr20:5159478-5159740(+)$1	1	20	23	9.0000
.((	chr17:37009850-37010070(-)$1	1	24	27	9.0000
...	chr19:13054527-13054781(+)$1	1	15	18	9.0000
)))	chr2:219093435-219093738(+)$1	1	79	82	9.0000
...	chr22:24439210-24439471(+)$1	1	52	55	9.0000
.((	chr6:28872170-28872417(-)$1	1	14	17	9.0000
)).	chr4:74321319-74321546(+)$1	1	63	66	9.0000
(((	chr10:70516163-70516430(+)$1	1	49	52	9.0000
((.	chr14:24769846-24770154(+)$1	1	83	86	9.0000
.((	chr2:70452412-70452649(-)$1	1	23	26	9.0000
(((	chr4:155533591-155533812(-)$1	1	3	6	9.0000
)))	chr12:12976134-12976430(+)$1	1	27	30	9.0000
.((	chr19:13054627-13054874(+)$1	1	6	9	9.0000
((.	chr14:31067517-31067806(+)$1	1	18	21	9.0000
)))	chr11:61188479-61188748(-)$1	1	26	29	9.0000
((.	chr2:86360303-86360600(+)$1	1	14	17	9.0000
.((	chr2:114476679-114476941(-)$1	1	13	16	9.0000
(((	chr14:73566372-73566623(+)$1	1	45	48	9.0000
.))	chr20:43031159-43031456(+)$1	1	27	30	9.0000
)))	chr4:74321295-74321509(+)$1	1	87	90	9.0000
((.	chr19:13054581-13054827(+)$1	1	52	55	9.0000
.))	chr12:72004233-72004553(-)$1	1	147	150	9.0000
)).	chr16:28847404-28847664(+)$1	1	40	43	9.0000
((.	chr12:53860997-53861244(+)$1	1	8	11	9.0000
)).	chr4:74321268-74321481(+)$1	1	114	117	9.0000
...	chr4:107168340-107168629(-)$1	1	18	21	9.0000
)))	chr14:23239357-23239615(+)$1	1	122	125	9.0000
...	chr4:110661921-110662157(-)$1	1	54	57	9.0000
)))	chr9:95013915-95014201(-)$1	1	36	39	9.0000
(((	chr4:74301916-74302147(+)$1	1	10	13	9.0000
)))	chr18:33744406-33744677(+)$1	1	113	116	9.0000
(((	chr9:19126204-19126479(-)$1	1	10	13	9.0000
(((	chr10:121336467-121336718(-)$1	1	15	18	9.0000
...	chr17:41622529-41622805(+)$1	1	148	151	9.0000
((.	chr2:58389959-58390236(-)$1	1	22	25	9.0000
...	chr20:62364331-62364672(+)$1	1	45	48	9.0000
...	chr4:155533456-155533688(-)$1	1	73	76	9.0000
(((	chr16:3117327-3117588(+)$1	1	12	15	9.0000
.((	chr6:31625410-31625664(+)$1	1	39	42	9.0000
((.	chr2:242276811-242277092(+)$1	1	9	12	9.0000
)))	chr6:142630669-142630952(+)$1	1	149	152	9.0000
.((	chr12:69746922-69747141(+)$1	1	139	142	9.0000
.))	chr5:42807000-42807249(-)$1	1	62	65	9.0000
...	chr4:120221389-120221603(-)$1	1	1	4	9.0000

#PSSM
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_transcript_m3_run2.nuc.txt

#NT
ccagccuggg	chr11:11914133-11914419(+)$1	286	26	36	25.0000
ccagccuggg	chr4:185543831-185544098(-)$1	267	1	11	25.0000
ccagccuggc	chr8:38230184-38230428(-)$1	244	199	209	23.3620
ccagccuggg	chr17:74325310-74325552(-)$1	242	191	201	25.0000
gcagccugga	chr1:31526465-31526725(-)$1	260	189	199	20.0000
ccagccugga	chr18:3008846-3009070(-)$1	224	139	149	23.9655
ccagccuggc	chr17:1652509-1652793(+)$1	284	12	22	23.3620
ccagccugga	chr5:138925981-138926261(+)$1	280	127	137	23.9655
ccagccuggg	chr2:61740466-61740731(-)$1	265	181	191	25.0000
ccagccuggg	chr1:156194495-156194744(+)$1	249	27	37	25.0000
acagccuggg	chr16:56419008-56419289(-)$1	281	229	239	20.8620
ccaggcugga	chr11:43704358-43704609(+)$1	251	16	26	20.4310
ccagucuggg	chr14:31660009-31660264(-)$1	255	191	201	20.8620
ccagcuuggg	chr2:153468799-153469032(+)$1	233	202	212	20.1724
ccagccgggg	chr20:45869545-45869812(-)$1	267	162	172	20.1724
ccagccuggc	chr2:179310663-179310926(-)$1	263	252	262	23.3620
ucagccuggc	chr1:17962179-17962480(+)$1	301	50	60	19.5689
ccagccugga	chr11:77345956-77346257(-)$1	301	192	202	23.9655
ccaggcugga	chr6:144639343-144639586(+)$1	243	128	138	20.4310
UCAGCCUGGC	chr9:116992544-116992811(+)$1	267	42	52	19.5689
caagccuggg	chr2:27569496-27569792(-)$1	296	14	24	20.2586
ccaggcuggu	chr19:55701022-55701299(-)$1	277	140	150	19.1379
ccagccuggg	chr16:10486600-10486839(+)$1	239	47	57	25.0000
ccaggcugga	chr10:21961028-21961304(+)$1	276	139	149	20.4310
ccaggcugga	chr2:47395708-47395955(-)$1	247	126	136	20.4310
ccagccuggc	chr14:39647496-39647792(+)$1	296	41	51	23.3620
ccaggcugga	chr13:45932294-45932576(+)$1	282	0	10	20.4310
ccagccuggg	chr17:55489266-55489525(+)$1	259	69	79	25.0000
ccagccuggg	chr20:34217546-34217797(-)$1	251	173	183	25.0000
ccagccuggg	chr11:67935062-67935332(-)$1	270	192	202	25.0000
ccagccuggg	chrX:132885891-132886152(-)$1	261	187	197	25.0000
ucagccugga	chr10:21831423-21831737(+)$1	314	196	206	20.1724
GCAGCCUGGU	chr11:118915473-118915741(-)$1	268	250	260	18.7068
UCAGCCUGGA	chr16:87396525-87396798(-)$1	273	150	160	20.1724
ccaggcugga	chr17:80595940-80596179(-)$1	239	141	151	20.4310
ccugccuggg	chr16:87927369-87927632(-)$1	263	204	214	20.3448
ccaggcugga	chr16:87928331-87928615(-)$1	284	154	164	20.4310
ccagccuggc	chr17:43217969-43218240(+)$1	271	212	222	23.3620
ccagccuggg	chr17:38424148-38424399(+)$1	251	48	58	25.0000
cuagccuggg	chr11:78222243-78222532(-)$1	289	192	202	20.2586
ccacccuggg	chr2:42811829-42812132(+)$1	303	159	169	20.3448
ccugccuggg	chr13:45962453-45962732(+)$1	279	192	202	20.3448
ccagccuggc	chr17:64214398-64214683(-)$1	285	41	51	23.3620
ccagccuggg	chr2:42541449-42541717(+)$1	268	17	27	25.0000
ccagccuggg	chr19:1988735-1989010(-)$1	275	49	59	25.0000
ccagccuaga	chr4:39509009-39509262(-)$1	253	207	217	19.1379
ccagccugga	chr12:57775841-57776143(-)$1	302	33	43	23.9655
ccagccuggg	chr7:99952352-99952613(+)$1	261	188	198	25.0000
ccauccuggg	chr20:34281153-34281425(-)$1	272	190	200	20.3448
gcagccugga	chr19:52527242-52527534(-)$1	292	228	238	20.0000
ccagccugaa	chr2:71593253-71593532(+)$1	279	204	214	19.1379
ccagccuggg	chr17:79960933-79961181(+)$1	248	190	200	25.0000
ccagccuggc	chr17:26996499-26996750(+)$1	251	124	134	23.3620
ucagccuggg	chr3:179408611-179408876(+)$1	265	146	156	21.2068
ccaaccuggg	chr19:11239325-11239634(+)$1	309	180	190	20.3448
ccagccuggc	chr2:201813411-201813651(-)$1	240	149	159	23.3620
ccagccuggg	chr1:156350339-156350584(+)$1	245	145	155	25.0000

#otherMatches

#Struct PSSM
DDKKGGGGGG	chr4:73967694-73967930(-)$1	236	37	47	25.0000
ddddeeeeeI	chr11:11914133-11914419(+)$1	286	26	36	25.0000
B{JJJJJJJJ	chr4:185543831-185544098(-)$1	267	1	11	25.0000
bb:JJJJJJJ	chr8:38230184-38230428(-)$1	244	199	209	23.3620
dd22gggggg	chr17:74325310-74325552(-)$1	242	191	201	25.0000
{BBFFFFFF:	chr1:31526465-31526725(-)$1	260	189	199	20.0000
JJJEEEEE{B	chr18:3008846-3009070(-)$1	224	139	149	23.9655
dddggggggg	chr17:1652509-1652793(+)$1	284	12	22	23.3620
!!ggggggg[	chr5:138925981-138926261(+)$1	280	127	137	23.9655
???DDDD}CC	chr2:61740466-61740731(-)$1	265	181	191	25.0000
JJJJJJJJJJ	chr1:156194495-156194744(+)$1	249	27	37	25.0000
]ccciiiiii	chr16:56419008-56419289(-)$1	281	229	239	20.8620
IIIIIIIII:	chr11:43704358-43704609(+)$1	251	16	26	20.4310
bba]ccc]cc	chr14:31660009-31660264(-)$1	255	191	201	20.8620
bggggggg44	chr2:153468799-153469032(+)$1	233	202	212	20.1724
bbmmmmbbbb	chr20:45869545-45869812(-)$1	267	162	172	20.1724
DDDGGGGGGG	chr2:179310663-179310926(-)$1	263	252	262	23.3620
ffffff:CCC	chr1:17962179-17962480(+)$1	301	50	60	19.5689
c333gggggg	chr11:77345956-77346257(-)$1	301	192	202	23.9655
ggggg[dddd	chr6:144639343-144639586(+)$1	243	128	138	20.4310
JJJJJJJJJJ	chr9:116992544-116992811(+)$1	267	42	52	19.5689
LLLBB{DDDD	chr2:27569496-27569792(-)$1	296	14	24	20.2586
"""ffffffs	chr19:55701022-55701299(-)$1	277	140	150	19.1379
nddddaeeee	chr16:10486600-10486839(+)$1	239	47	57	25.0000
ddCCC{FFFF	chr10:21961028-21961304(+)$1	276	139	149	20.4310
eeeee[ccc!	chr2:47395708-47395955(-)$1	247	126	136	20.4310
d4444fffff	chr14:39647496-39647792(+)$1	296	41	51	23.3620
HHHHHHHH::	chr13:45932294-45932576(+)$1	282	0	10	20.4310
D{HHHHHHHH	chr17:55489266-55489525(+)$1	259	69	79	25.0000
ca22gggggg	chr20:34217546-34217797(-)$1	251	173	183	25.0000
eeeeefffff	chr11:67935062-67935332(-)$1	270	192	202	25.0000
CC}HHHHHHH	chrX:132885891-132886152(-)$1	261	187	197	25.0000
ndddd]bb::	chr10:21831423-21831737(+)$1	314	196	206	20.1724
dddd:JJJJJ	chr11:118915473-118915741(-)$1	268	250	260	18.7068
[hhhhhhhh!	chr16:87396525-87396798(-)$1	273	150	160	20.1724
dddbb[eeee	chr17:80595940-80596179(-)$1	239	141	151	20.4310
c333gggggg	chr16:87927369-87927632(-)$1	263	204	214	20.3448
[dddd[bb[b	chr16:87928331-87928615(-)$1	284	154	164	20.4310
b22ccceeee	chr17:43217969-43218240(+)$1	271	212	222	23.3620
c333gggggg	chr17:38424148-38424399(+)$1	251	48	58	25.0000
nnnngggggg	chr11:78222243-78222532(-)$1	289	192	202	20.2586
f"""======	chr2:42811829-42812132(+)$1	303	159	169	20.3448
c::bb[dddd	chr13:45962453-45962732(+)$1	279	192	202	20.3448
c333gggggg	chr17:64214398-64214683(-)$1	285	41	51	23.3620
::::::CCCF	chr2:42541449-42541717(+)$1	268	17	27	25.0000
=========[	chr19:1988735-1989010(-)$1	275	49	59	25.0000
dd]dddd888	chr4:39509009-39509262(-)$1	253	207	217	19.1379
c333eeeee]	chr12:57775841-57776143(-)$1	302	33	43	23.9655
bb:::cccnn	chr7:99952352-99952613(+)$1	261	188	198	25.0000
ttthhhhhhh	chr20:34281153-34281425(-)$1	272	190	200	20.3448
YCCC}DDDDY	chr19:52527242-52527534(-)$1	292	228	238	20.0000
dd:::cccnn	chr2:71593253-71593532(+)$1	279	204	214	19.1379
]eeeeedddd	chr17:79960933-79961181(+)$1	248	190	200	25.0000
dddiiiiiii	chr17:26996499-26996750(+)$1	251	124	134	23.3620
eeeee:::ff	chr3:179408611-179408876(+)$1	265	146	156	21.2068
c333gggggg	chr19:11239325-11239634(+)$1	309	180	190	20.3448
dddhhhhhhh	chr2:201813411-201813651(-)$1	240	149	159	23.3620
ba]dddd444	chr1:156350339-156350584(+)$1	245	145	155	25.0000

#DB
((..((((((	chr4:73967694-73967930(-)$1	1	37	47	25.0000
)))))))))(	chr11:11914133-11914419(+)$1	1	26	36	25.0000
(.((((((((	chr4:185543831-185544098(-)$1	1	1	11	25.0000
)).)))))))	chr8:38230184-38230428(-)$1	1	199	209	23.3620
))..))))))	chr17:74325310-74325552(-)$1	1	191	201	25.0000
.((((((((.	chr1:31526465-31526725(-)$1	1	189	199	20.0000
)))(((((.(	chr18:3008846-3009070(-)$1	1	139	149	23.9655
((((((((((	chr17:1652509-1652793(+)$1	1	12	22	23.3620
..(((((((.	chr5:138925981-138926261(+)$1	1	127	137	23.9655
...)))).))	chr2:61740466-61740731(-)$1	1	181	191	25.0000
((((((((((	chr1:156194495-156194744(+)$1	1	27	37	25.0000
.)))))))))	chr16:56419008-56419289(-)$1	1	229	239	20.8620
(((((((((.	chr11:43704358-43704609(+)$1	1	16	26	20.4310
))).))).))	chr14:31660009-31660264(-)$1	1	191	201	20.8620
))))))))..	chr2:153468799-153469032(+)$1	1	202	212	20.1724
((....))((	chr20:45869545-45869812(-)$1	1	162	172	20.1724
))))))))))	chr2:179310663-179310926(-)$1	1	252	262	23.3620
)))))).(((	chr1:17962179-17962480(+)$1	1	50	60	19.5689
)...))))))	chr11:77345956-77346257(-)$1	1	192	202	23.9655
(((((.((((	chr6:144639343-144639586(+)$1	1	128	138	20.4310
((((((((((	chr9:116992544-116992811(+)$1	1	42	52	19.5689
...((.((((	chr2:27569496-27569792(-)$1	1	14	24	20.2586
...((((((.	chr19:55701022-55701299(-)$1	1	140	150	19.1379
.)))))))))	chr16:10486600-10486839(+)$1	1	47	57	25.0000
))(((.((((	chr10:21961028-21961304(+)$1	1	139	149	20.4310
(((((.(((.	chr2:47395708-47395955(-)$1	1	126	136	20.4310
)....)))))	chr14:39647496-39647792(+)$1	1	41	51	23.3620
((((((((..	chr13:45932294-45932576(+)$1	1	0	10	20.4310
(.((((((((	chr17:55489266-55489525(+)$1	1	69	79	25.0000
))..))))))	chr20:34217546-34217797(-)$1	1	173	183	25.0000
))))))))))	chr11:67935062-67935332(-)$1	1	192	202	25.0000
)).)))))))	chrX:132885891-132886152(-)$1	1	187	197	25.0000
.)))).))..	chr10:21831423-21831737(+)$1	1	196	206	20.1724
)))).)))))	chr11:118915473-118915741(-)$1	1	250	260	18.7068
.((((((((.	chr16:87396525-87396798(-)$1	1	150	160	20.1724
(((((.((((	chr17:80595940-80596179(-)$1	1	141	151	20.4310
)...))))))	chr16:87927369-87927632(-)$1	1	204	214	20.3448
.((((.((.(	chr16:87928331-87928615(-)$1	1	154	164	20.4310
)..)))))))	chr17:43217969-43218240(+)$1	1	212	222	23.3620
)...))))))	chr17:38424148-38424399(+)$1	1	48	58	25.0000
....))))))	chr11:78222243-78222532(-)$1	1	192	202	20.2586
(...((((((	chr2:42811829-42812132(+)$1	1	159	169	20.3448
)..((.((((	chr13:45962453-45962732(+)$1	1	192	202	20.3448
)...))))))	chr17:64214398-64214683(-)$1	1	41	51	23.3620
......((((	chr2:42541449-42541717(+)$1	1	17	27	25.0000
(((((((((.	chr19:1988735-1989010(-)$1	1	49	59	25.0000
)).))))...	chr4:39509009-39509262(-)$1	1	207	217	19.1379
)...))))).	chr12:57775841-57776143(-)$1	1	33	43	23.9655
))...(((..	chr7:99952352-99952613(+)$1	1	188	198	25.0000
...)))))))	chr20:34281153-34281425(-)$1	1	190	200	20.3448
.))).)))).	chr19:52527242-52527534(-)$1	1	228	238	20.0000
))...(((..	chr2:71593253-71593532(+)$1	1	204	214	19.1379
.)))))((((	chr17:79960933-79961181(+)$1	1	190	200	25.0000
((((((((((	chr17:26996499-26996750(+)$1	1	124	134	23.3620
)))))...((	chr3:179408611-179408876(+)$1	1	146	156	21.2068
)...))))))	chr19:11239325-11239634(+)$1	1	180	190	20.3448
((((((((((	chr2:201813411-201813651(-)$1	1	149	159	23.3620
)).))))...	chr1:156350339-156350584(+)$1	1	145	155	25.0000

#PSSM
c : 0.84	u : 0.05	g : 0.03	U : 0.03	a : 0.01	G : 0.01	
c : 0.91	C : 0.05	a : 0.01	u : 0.01	
a : 0.91	A : 0.05	u : 0.03	
g : 0.89	G : 0.05	c : 0.01	u : 0.01	a : 0.01	
c : 0.79	g : 0.13	C : 0.05	u : 0.01	
c : 0.93	C : 0.05	u : 0.01	
u : 0.93	U : 0.05	g : 0.01	
g : 0.93	G : 0.05	a : 0.01	
g : 0.93	G : 0.05	a : 0.01	
g : 0.49	a : 0.27	c : 0.15	C : 0.01	u : 0.01	U : 0.01	A : 0.01	

#score	1291.8965517241381
#seq	58
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_UTR_m1_run1.nuc.txt

#NT
CAGGCUGGGGG	chr17:28443794-28444129(+)$1	335	110	121	17.1269
GGAGCUGAGGG	chr1:205418847-205419096(-)$1	249	150	161	17.2857
GGAGCUGGUGG	chr17:7477342-7477621(+)$1	279	102	113	16.8888
GGGGCGGGGCG	chr12:30907405-30907741(-)$1	336	177	188	16.8095
ggggguggggg	chr16:447640-447883(+)$1	243	17	28	21.8888
GGGGCUCUGGG	chr6:43028068-43028421(+)$1	353	105	116	16.4126
ggggcggcggg	chr7:32931162-32931508(-)$1	346	2	13	17.2857
GGGCCUGGGGG	chr3:184080506-184080782(+)$1	276	70	81	20.9365
GUGUCUGGGGG	chr20:42142928-42143284(+)$1	356	7	18	16.6507
GGGCCUGGGGG	chr19:18547995-18548280(-)$1	285	209	220	20.9365
GGGGGUUGGGG	chr7:77166499-77166766(+)$1	267	96	107	17.2857
ggggcagaggg	chr2:242447550-242447833(-)$1	283	18	29	17.5238
GGGGCUGGUGA	chr19:2270265-2270487(+)$1	222	9	20	16.9682
GGGGAUGGGGC	chr19:16187719-16188015(+)$1	296	45	56	16.8888
GCGCCUggggg	chr19:56652951-56653258(+)$1	307	57	68	16.6507
GGGACUGGGGA	chr3:49058149-49058382(-)$1	233	162	173	16.7301
GGGGGUGGGGG	chr5:137274325-137274605(-)$1	280	258	269	21.8888
CUGGCUGGGGG	chr17:7082307-7082564(-)$1	257	84	95	16.8888
GGGGCCGGGCG	chr3:49058407-49058718(-)$1	311	55	66	16.8888
gggccugcggg	chr3:195635536-195635820(-)$1	284	75	86	17.2063
GACGCUGGGGG	chr20:57467327-57467612(+)$1	285	114	125	16.4126
GGGGCUGGGCG	chr11:18034099-18034448(-)$1	349	34	45	20.6190
UAGGCUGGGGG	chr22:41487773-41488046(+)$1	273	29	40	17.1269
agggcuggcgg	chr2:97535510-97535793(-)$1	283	74	85	17.1269
GGGGCCGGGGG	chr8:8243809-8244096(-)$1	287	241	252	21.0952
GGGGGUGGGGG	chr8:144678424-144678676(-)$1	252	85	96	21.8888
CGGGCUGAGGG	chr13:113863076-113863347(+)$1	271	35	46	17.7619
ggggcuggcgg	chr17:7154457-7154751(-)$1	294	78	89	21.1746
GGGGCUGGGGG	chr15:52970610-52970934(-)$1	324	71	82	24.8253
UGGGCUGGAGG	chr16:30205869-30206171(+)$1	302	38	49	17.2857
GGGGCUGGGGA	chr7:128828630-128828912(+)$1	282	49	60	20.6984
UGUGCUGGGGG	chr19:46142209-46142551(-)$1	342	88	99	16.6507
GGAGCUGAGGG	chr1:205418896-205419120(-)$1	224	174	185	17.2857
GAGGCUGGGGA	chr20:62572796-62573069(-)$1	273	125	136	16.7301
GGGGCUGUGGG	chr9:139904664-139905000(-)$1	336	58	69	21.0158
GGGGCUGGGAG	chr6:41748002-41748313(+)$1	311	85	96	20.6190
GGGGCUGGUGA	chr19:2270119-2270432(+)$1	313	155	166	16.9682
GGGGCUGACGG	chr10:75578138-75578480(-)$1	342	68	79	17.8412
GGGGCAGGCGG	chr14:103574564-103574856(+)$1	292	141	152	17.2063
UGGGCUGGGGG	chr16:2579938-2580210(+)$1	272	39	50	21.0952
ggggcugaggg	chr6:86352554-86352827(-)$1	273	46	57	21.4920
GGGAGUGGGGG	chr17:7477026-7477285(+)$1	259	96	107	17.9206
GGGGCUGGAGG	chr2:55646579-55646907(-)$1	328	69	80	21.0158
GAGGCUGGGUG	chr1:36787418-36787740(+)$1	322	11	22	16.4920
GGGGCUggagg	chr3:100428681-100428980(+)$1	299	3	14	21.0158
GGGUCUGGUGG	chr10:75578348-75578622(-)$1	274	85	96	17.1269
GGGGAUGGGGG	chr14:105259204-105259495(-)$1	291	57	68	21.3333
GGGGGUGAGGG	chr20:61584238-61584506(+)$1	268	10	21	18.5555
GGGGAUGGGGG	chr9:35689918-35690161(-)$1	243	54	65	21.3333
GGGGGUGGCGG	chr19:41770831-41771102(+)$1	271	110	121	18.2380
GGGGCUGGGAG	chr9:35690529-35690784(-)$1	255	175	186	20.6190
UGGGCCGGGGG	chr12:1909051-1909335(-)$1	284	25	36	17.3650
GGGGCCGGGAG	chr3:49045382-49045635(+)$1	253	53	64	16.8888
GGGGGUGGGGG	chr14:54421086-54421341(-)$1	255	61	72	21.8888
GGGGGUGGGGG	chr5:137274163-137274455(-)$1	292	108	119	21.8888
GGGUCUGAGGG	chr20:62331312-62331612(-)$1	300	92	103	17.5238
cgggccggggg	chr8:25315648-25315940(-)$1	292	251	262	17.3650
GGGGGUGGGGG	chr10:21785879-21786125(-)$1	246	21	32	21.8888
GGGAGUGGGGG	chr16:29985280-29985588(+)$1	308	92	103	17.9206
ggagauggggg	chr17:55333766-55334040(+)$1	274	50	61	17.1269
GGGGCUACGGG	chr15:52971188-52971477(-)$1	289	20	31	16.5714
ggggcgagggg	chr12:125270543-125270859(-)$1	316	285	296	16.4920

#otherMatches

#Struct PSSM
eeeee]ccccc	chr3:48470754-48470994(-)$1	240	72	83	17.2857
KCCCdddd[a[	chr17:28443794-28444129(+)$1	335	110	121	17.1269
eeeccc::ddd	chr1:205418847-205419096(-)$1	249	150	161	17.2857
tttccc]a]ee	chr17:7477342-7477621(+)$1	279	102	113	16.8888
]ffffff22gg	chr12:30907405-30907741(-)$1	336	177	188	16.8095
qqqccc]cccB	chr16:447640-447883(+)$1	243	17	28	21.8888
DD{DDDD{HHH	chr6:43028068-43028421(+)$1	353	105	116	16.4126
A{JJJJJJJJJ	chr7:32931162-32931508(-)$1	346	2	13	17.2857
hhhhhhh[a!!	chr3:184080506-184080782(+)$1	276	70	81	20.9365
F{HHHHHHHHc	chr20:42142928-42143284(+)$1	356	7	18	16.6507
gggggg333dd	chr19:18547995-18548280(-)$1	285	209	220	20.9365
ee[a[appppp	chr7:77166499-77166766(+)$1	267	96	107	17.2857
::::::::A{G	chr2:242447550-242447833(-)$1	283	18	29	17.5238
JJJCCCddddo	chr19:2270265-2270487(+)$1	222	9	20	16.9682
::CCC{FFFFF	chr19:16187719-16188015(+)$1	296	45	56	16.8888
DDDD{BBKKEE	chr19:56652951-56653258(+)$1	307	57	68	16.6507
gggg]dddd22	chr3:49058149-49058382(-)$1	233	162	173	16.7301
ccEEEEE}BBG	chr5:137274325-137274605(-)$1	280	258	269	21.8888
cc]ccc]eeee	chr17:7082307-7082564(-)$1	257	84	95	16.8888
"""gggggggr	chr3:49058407-49058718(-)$1	311	55	66	16.8888
ffffff:EEEE	chr3:195635536-195635820(-)$1	284	75	86	17.2063
22a]bb:::::	chr20:57467327-57467612(+)$1	285	114	125	16.4126
EEEEEDDDD{D	chr11:18034099-18034448(-)$1	349	34	45	20.6190
b!!cccvvvvv	chr22:41487773-41488046(+)$1	273	29	40	17.1269
$$$ccc[ccco	chr2:97535510-97535793(-)$1	283	74	85	17.1269
bb22eeeee33	chr8:8243809-8244096(-)$1	287	241	252	21.0952
oeeeee]ccc]	chr8:144678424-144678676(-)$1	252	85	96	21.8888
GEEEEENNNNN	chr13:113863076-113863347(+)$1	271	35	46	17.7619
gggcccnnnnn	chr17:7154457-7154751(-)$1	294	78	89	21.1746
d]ffffff333	chr15:52970610-52970934(-)$1	324	71	82	24.8253
deeeeeqqqqq	chr16:30205869-30206171(+)$1	302	38	49	17.2857
ddd[bbrrrrr	chr7:128828630-128828912(+)$1	282	49	60	20.6984
]bb]ggggggg	chr19:46142209-46142551(-)$1	342	88	99	16.6507
eeedddd::::	chr1:205418896-205419120(-)$1	224	174	185	17.2857
a22bb:DDDDY	chr20:62572796-62573069(-)$1	273	125	136	16.7301
ffffff]bb33	chr9:139904664-139905000(-)$1	336	58	69	21.0158
c:DDDD{CCC:	chr6:41748002-41748313(+)$1	311	85	96	20.6190
HHHCCCddddo	chr19:2270119-2270432(+)$1	313	155	166	16.9682
GGGGGGG{A{C	chr10:75578138-75578480(-)$1	342	68	79	17.8412
iiiabb####d	chr14:103574564-103574856(+)$1	292	141	152	17.2063
fffeeeeesss	chr16:2579938-2580210(+)$1	272	39	50	21.0952
LLHHHHHHHH:	chr6:86352554-86352827(-)$1	273	46	57	21.4920
3ccc]bb]fff	chr17:7477026-7477285(+)$1	259	96	107	17.9206
gggggg:::::	chr2:55646579-55646907(-)$1	328	69	80	21.0158
pppbb]ddddc	chr1:36787418-36787740(+)$1	322	11	22	16.4920
CC{CCCEEEEE	chr3:100428681-100428980(+)$1	299	3	14	21.0158
ffffff]a22c	chr10:75578348-75578622(-)$1	274	85	96	17.1269
55555ccc:a[	chr14:105259204-105259495(-)$1	291	57	68	21.3333
{EEEEE{DDDD	chr20:61584238-61584506(+)$1	268	10	21	18.5555
:FFFFFFdddd	chr9:35689918-35690161(-)$1	243	54	65	21.3333
gggggg::BB{	chr19:41770831-41771102(+)$1	271	110	121	18.2380
""a[bbqqqqq	chr9:35690529-35690784(-)$1	255	175	186	20.6190
III========	chr12:1909051-1909335(-)$1	284	25	36	17.3650
hhhhhhh:fff	chr3:49045382-49045635(+)$1	253	53	64	16.8888
a]a]dddd]cc	chr14:54421086-54421341(-)$1	255	61	72	21.8888
GGGFFFFFFee	chr5:137274163-137274455(-)$1	292	108	119	21.8888
hhhhhhh:CCC	chr20:62331312-62331612(-)$1	300	92	103	17.5238
BB}CCC}DDDD	chr8:25315648-25315940(-)$1	292	251	262	17.3650
mmmddddffff	chr10:21785879-21786125(-)$1	246	21	32	21.8888
GGbb[hhhhhh	chr16:29985280-29985588(+)$1	308	92	103	17.9206
bb333bb]a]f	chr17:55333766-55334040(+)$1	274	50	61	17.1269
{EEEEE{EEEE	chr15:52971188-52971477(-)$1	289	20	31	16.5714
EEEYYA}BB}E	chr12:125270543-125270859(-)$1	316	285	296	16.4920

#DB
))))).)))))	chr3:48470754-48470994(-)$1	1	72	83	17.2857
.(((((((.(.	chr17:28443794-28444129(+)$1	1	110	121	17.1269
))))))..(((	chr1:205418847-205419096(-)$1	1	150	161	17.2857
...))).).))	chr17:7477342-7477621(+)$1	1	102	113	16.8888
.))))))..))	chr12:30907405-30907741(-)$1	1	177	188	16.8095
...))).)))(	chr16:447640-447883(+)$1	1	17	28	21.8888
((.((((.(((	chr6:43028068-43028421(+)$1	1	105	116	16.4126
(.(((((((((	chr7:32931162-32931508(-)$1	1	2	13	17.2857
(((((((.(..	chr3:184080506-184080782(+)$1	1	70	81	20.9365
(.(((((((((	chr20:42142928-42143284(+)$1	1	7	18	16.6507
))))))...))	chr19:18547995-18548280(-)$1	1	209	220	20.9365
((.(.(.....	chr7:77166499-77166766(+)$1	1	96	107	17.2857
........(.(	chr2:242447550-242447833(-)$1	1	18	29	17.5238
((((((((((.	chr19:2270265-2270487(+)$1	1	9	20	16.9682
..(((.(((((	chr19:16187719-16188015(+)$1	1	45	56	16.8888
((((.((..((	chr19:56652951-56653258(+)$1	1	57	68	16.6507
)))).))))..	chr3:49058149-49058382(-)$1	1	162	173	16.7301
))))))).)))	chr5:137274325-137274605(-)$1	1	258	269	21.8888
)).))).))))	chr17:7082307-7082564(-)$1	1	84	95	16.8888
...(((((((.	chr3:49058407-49058718(-)$1	1	55	66	16.8888
)))))).))))	chr3:195635536-195635820(-)$1	1	75	86	17.2063
..).)).....	chr20:57467327-57467612(+)$1	1	114	125	16.4126
(((((((((.(	chr11:18034099-18034448(-)$1	1	34	45	20.6190
(..(((.....	chr22:41487773-41488046(+)$1	1	29	40	17.1269
...(((.(((.	chr2:97535510-97535793(-)$1	1	74	85	17.1269
))..)))))..	chr8:8243809-8244096(-)$1	1	241	252	21.0952
.))))).))).	chr8:144678424-144678676(-)$1	1	85	96	21.8888
((((((.....	chr13:113863076-113863347(+)$1	1	35	46	17.7619
)))(((.....	chr17:7154457-7154751(-)$1	1	78	89	21.1746
).))))))...	chr15:52970610-52970934(-)$1	1	71	82	24.8253
)(((((.....	chr16:30205869-30206171(+)$1	1	38	49	17.2857
(((.((.....	chr7:128828630-128828912(+)$1	1	49	60	20.6984
.)).)))))))	chr19:46142209-46142551(-)$1	1	88	99	16.6507
)))))))....	chr1:205418896-205419120(-)$1	1	174	185	17.2857
)..)).)))).	chr20:62572796-62573069(-)$1	1	125	136	16.7301
)))))).))..	chr9:139904664-139905000(-)$1	1	58	69	21.0158
).((((.(((.	chr6:41748002-41748313(+)$1	1	85	96	20.6190
((((((((((.	chr19:2270119-2270432(+)$1	1	155	166	16.9682
(((((((.(.(	chr10:75578138-75578480(-)$1	1	68	79	17.8412
((((((....(	chr14:103574564-103574856(+)$1	1	141	152	17.2063
)))(((((...	chr16:2579938-2580210(+)$1	1	39	50	21.0952
..((((((((.	chr6:86352554-86352827(-)$1	1	46	57	21.4920
.))).)).)))	chr17:7477026-7477285(+)$1	1	96	107	17.9206
)))))).....	chr2:55646579-55646907(-)$1	1	69	80	21.0158
...)).))))(	chr1:36787418-36787740(+)$1	1	11	22	16.4920
((.((((((((	chr3:100428681-100428980(+)$1	1	3	14	21.0158
)))))).)..)	chr10:75578348-75578622(-)$1	1	85	96	17.1269
.....))).(.	chr14:105259204-105259495(-)$1	1	57	68	21.3333
.(((((.((((	chr20:61584238-61584506(+)$1	1	10	21	18.5555
.((((((((((	chr9:35689918-35690161(-)$1	1	54	65	21.3333
))))))..((.	chr19:41770831-41771102(+)$1	1	110	121	18.2380
..(.((.....	chr9:35690529-35690784(-)$1	1	175	186	20.6190
(((((((((((	chr12:1909051-1909335(-)$1	1	25	36	17.3650
))))))).(((	chr3:49045382-49045635(+)$1	1	53	64	16.8888
).).)))).))	chr14:54421086-54421341(-)$1	1	61	72	21.8888
)))((((((((	chr5:137274163-137274455(-)$1	1	108	119	21.8888
))))))).(((	chr20:62331312-62331612(-)$1	1	92	103	17.5238
)).))).))))	chr8:25315648-25315940(-)$1	1	251	262	17.3650
...))))((((	chr10:21785879-21786125(-)$1	1	21	32	21.8888
((((.((((((	chr16:29985280-29985588(+)$1	1	92	103	17.9206
))...)).).)	chr17:55333766-55334040(+)$1	1	50	61	17.1269
.(((((.((((	chr15:52971188-52971477(-)$1	1	20	31	16.5714
)))..).)).)	chr12:125270543-125270859(-)$1	1	285	296	16.4920

#PSSM
G : 0.69	g : 0.12	U : 0.07	C : 0.04	c : 0.03	a : 0.01	
G : 0.69	g : 0.17	A : 0.07	U : 0.03	C : 0.01	
G : 0.74	g : 0.15	A : 0.04	C : 0.01	U : 0.01	a : 0.01	
G : 0.68	g : 0.15	C : 0.04	U : 0.04	A : 0.04	c : 0.01	
C : 0.61	G : 0.15	c : 0.14	A : 0.04	g : 0.01	a : 0.01	
U : 0.73	u : 0.09	C : 0.06	g : 0.04	G : 0.01	a : 0.01	A : 0.01	c : 0.01	
G : 0.74	g : 0.19	C : 0.01	U : 0.01	A : 0.01	a : 0.01	
G : 0.65	g : 0.14	A : 0.09	U : 0.03	c : 0.03	a : 0.03	C : 0.01	
G : 0.65	g : 0.15	U : 0.06	C : 0.04	c : 0.03	A : 0.03	a : 0.01	
G : 0.68	g : 0.20	C : 0.04	A : 0.04	U : 0.01	
G : 0.69	g : 0.20	A : 0.07	C : 0.01	

#score	1173.920634920634
#seq	63
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_transcript_m3_run2.nuc.txt

#NT
uggcuggaauucagauccagagccugugccccuaaccUGGAAGGGGUGCCUGCCCUGGAAGAUUGUCUGGGUCUGGUCCAGGGCCCCAUACAGGCAUCCUUGUAGUCACUGCUGGUUUCCCUUCCCAGAGCUUGGGGGAGGUGCUGAAUGUCCUGCCCAGGUCAGUGUGGCAuuaaagaaaagauuacucaugacacuuguuaaagaugaaggaagacuuuauucaagggggagcuauuacauugggguuuuguagcagaggagagagacuggguuucacucucucuacaauagggaaaauuggggauuuauagcc	chr17:39834775-39835117(-)$1	342	6	322	425.5000

#otherMatches

#Struct PSSM
dffffffCCC{GGGGGGGFFFFFFKKCCCQQQQQQQQGGGGGGGDDDD{CCC{FFFFFF:::a[ccceeeeebb!!ffffff!!adddd[dddd%%%%%%gggggggeeeee[cccbb$$$$$===========!!a[ccclllccc]a22===========]bb]ccc]eeeee333ggggggg>>>>>>>>>>>>>dddd22dddd]a22ffffff22bb7777777eeeee22ccc]adddd!!bbrrrrrrrrrbb22dddd:::::::::::FFFFFFCCC}DDDD}GGGGGGG////////CCCYYFFFF	chr17:7809304-7809732(+)$1	428	93	409	425.5000
dddddcccpppppppccc22dddd]ddddEEEEE{DDDD::==========hhhhhhhheeeeennnnneeeee22hhhhhhhh7777777==========ddddlllddddEEEEEEEEEEDDDD:::gggggggccc[bbnnnnnbb]ccc22gggggggffffff++++++++++++++ccc!!ccc####a[dddd$$$$$gggggggnnnnngggggggdddda22ccc22cccffffff:::::ffffff[dddd[bb[eeeeellleeeee]bbddddffffff::DDDD?????EEEEE?????EEEE	chr17:39834775-39835117(-)$1	342	6	322	425.5000

#DB
)))))))(((.(((((((((((((..(((........(((((((((((.(((.((((((...(.((((((((((..((((((..(((((.((((......((((((((((((.(((((.....(((((((((((..(.(((...))).)..))))))))))).)).))).)))))...))))))).............))))..)))).)..))))))..)).......)))))..))).)((((..((.........))..))))...........))))))))).)))).)))))))........)))..))))	chr17:7809304-7809732(+)$1	1	93	409	425.5000
((((((((.......)))..)))).))))(((((.((((..(((((((((((((((((((((((.....)))))..)))))))).......))))))))))((((...))))((((((((((((((...((((((((((.((.....)).)))..)))))))((((((..............(((..(((....(.((((.....(((((((.....))))))))))))..)))..))))))))).....((((((.((((.((.(((((...))))).))))))))))))..)))).....))))).....))))	chr17:39834775-39835117(-)$1	1	6	322	425.5000

#PSSM
U : 0.50	u : 0.50	
U : 0.50	g : 0.50	
A : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	a : 0.50	
C : 0.50	a : 0.50	
U : 0.50	u : 0.50	
G : 0.50	u : 0.50	
A : 0.50	c : 0.50	
U : 0.50	a : 0.50	
U : 0.50	g : 0.50	
A : 0.50	a : 0.50	
U : 0.50	u : 0.50	
C : 0.50	c : 0.50	
A : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	c : 0.50	
U : 0.50	c : 0.50	
A : 0.50	c : 0.50	
C : 0.50	u : 0.50	
A : 0.50	a : 0.50	
A : 0.50	a : 0.50	
U : 0.50	c : 0.50	
A : 0.50	c : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	u : 0.50	
U : 0.50	u : 0.50	
C : 0.50	a : 0.50	
A : 0.50	a : 0.50	
C : 0.50	a : 0.50	
A : 0.50	g : 0.50	
U : 0.50	a : 0.50	
U : 0.50	a : 0.50	
U : 0.50	a : 0.50	
A : 0.50	a : 0.50	
C : 0.50	g : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
G : 0.50	u : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
C : 0.50	u : 0.50	
A : 0.50	c : 0.50	
C : 0.50	a : 0.50	
A : 0.50	u : 0.50	
A : 0.50	g : 0.50	
U : 0.50	a : 0.50	
A : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
C : 0.50	u : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
C : 0.50	u : 0.50	
A : 0.50	a : 0.50	
G : 0.50	a : 0.50	
G : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	a : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
A : 0.50	c : 0.50	
A : 0.50	u : 0.50	
A : 0.50	u : 0.50	
G : 0.50	u : 0.50	
G : 0.50	a : 0.50	
A : 0.50	u : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
A : 0.50	a : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	a : 0.50	
A : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	a : 0.50	
A : 0.50	u : 0.50	
U : 0.50	u : 0.50	
G : 0.50	a : 0.50	
G : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	u : 0.50	
C : 0.50	u : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
A : 0.50	u : 0.50	
A : 0.50	u : 0.50	
U : 0.50	u : 0.50	
U : 0.50	g : 0.50	
A : 0.50	u : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
A : 0.50	a : 0.50	
A : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	u : 0.50	
G : 0.50	u : 0.50	
A : 0.50	u : 0.50	
C : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	c : 0.50	
A : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
U : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	a : 0.50	
G : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	a : 0.50	
G : 0.50	u : 0.50	
C : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	a : 0.50	
G : 0.50	a : 0.50	
A : 0.50	a : 0.50	
C : 0.50	u : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
U : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	u : 0.50	
A : 0.50	u : 0.50	
C : 0.50	u : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	c : 0.50	

#score	851.0
#seq	2
#width	316
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_UTR_m3_run2.nuc.txt

#NT
CUU	chr6:43465517-43465811(+)$1	294	9	12	8.9999
CUU	chr6:36936493-36936753(-)$1	260	11	14	8.9999
CUU	chr11:70275118-70275406(+)$1	288	26	29	8.9999
CUU	chr16:67979568-67979782(-)$1	214	125	128	8.9999
CUU	chr11:124492795-124493094(+)$1	299	132	135	8.9999
CUU	chr19:1249783-1250071(+)$1	288	76	79	8.9999
cuu	chr9:117002401-117002642(+)$1	241	54	57	8.9999
CUU	chr5:179151630-179151878(+)$1	248	9	12	8.9999
CUU	chr14:35099015-35099279(-)$1	264	60	63	8.9999
CUU	chr17:45727650-45727873(+)$1	223	86	89	8.9999
CUU	chr20:61569043-61569295(-)$1	252	155	158	8.9999
CUU	chr17:53398020-53398294(+)$1	274	150	153	8.9999
CUU	chr1:39456853-39457114(+)$1	261	14	17	8.9999
CUU	chr16:31202194-31202424(+)$1	230	14	17	8.9999
CUU	chr15:49913144-49913444(+)$1	300	20	23	8.9999
cuu	chr14:34931260-34931545(-)$1	285	68	71	8.9999
CUU	chr12:120884181-120884466(+)$1	285	129	132	8.9999
CUU	chr16:89865472-89865729(-)$1	257	83	86	8.9999
CUU	chr21:48055482-48055854(+)$1	372	18	21	8.9999
CUU	chr3:49823795-49824058(-)$1	263	36	39	8.9999
CUU	chr9:139722857-139723099(+)$1	242	113	116	8.9999
CUU	chr3:9730534-9730856(+)$1	322	8	11	8.9999
CUU	chr2:61404603-61404871(+)$1	268	14	17	8.9999
CUU	chr21:47556778-47557001(-)$1	223	79	82	8.9999
CUU	chr2:43019518-43019812(-)$1	294	46	49	8.9999
CUU	chr17:79988110-79988394(+)$1	284	69	72	8.9999
CUU	chr12:109125090-109125390(-)$1	300	128	131	8.9999
CUU	chr19:19102048-19102307(-)$1	259	38	41	8.9999
CUU	chr10:70515028-70515332(+)$1	304	22	25	8.9999
CUU	chr12:132605884-132606193(+)$1	309	94	97	8.9999
CUU	chr9:117051425-117051671(+)$1	246	69	72	8.9999
CUU	chr14:35344239-35344511(-)$1	272	122	125	8.9999
CUU	chr9:117068700-117068905(+)$1	205	38	41	8.9999
CUU	chr19:58757599-58757877(+)$1	278	78	81	8.9999
CUU	chr8:131370121-131370397(-)$1	276	83	86	8.9999
cuu	chr17:4575228-4575572(-)$1	344	13	16	8.9999
CUU	chr15:75659810-75660071(-)$1	261	0	3	8.9999
CUU	chr9:117027245-117027482(+)$1	237	57	60	8.9999
CUU	chr22:50685011-50685263(-)$1	252	89	92	8.9999
CUU	chr9:117052989-117053200(+)$1	211	7	10	8.9999
CUU	chr12:123001775-123002072(-)$1	297	0	3	8.9999
CUU	chr2:231577641-231578049(+)$1	408	352	355	8.9999
CUU	chr17:56081117-56081377(-)$1	260	49	52	8.9999
CUU	chr7:99696823-99697104(-)$1	281	25	28	8.9999
CUU	chr14:24034750-24034999(-)$1	249	37	40	8.9999
CUU	chr7:134632323-134632624(+)$1	301	17	20	8.9999
CUU	chr1:244998896-244999220(+)$1	324	64	67	8.9999
CUU	chr9:117005690-117005900(+)$1	210	25	28	8.9999
CUU	chr14:24632100-24632356(+)$1	256	49	52	8.9999
CUU	chr16:31200914-31201184(+)$1	270	34	37	8.9999
CUU	chr20:57234574-57234790(+)$1	216	21	24	8.9999
CUU	chrX:48433852-48434098(+)$1	246	17	20	8.9999
CUU	chr12:124093131-124093468(+)$1	337	2	5	8.9999
CUU	chr14:21730638-21730880(-)$1	242	87	90	8.9999
CUU	chr1:70697481-70697752(+)$1	271	16	19	8.9999
CUU	chr7:148984631-148985022(+)$1	391	7	10	8.9999
CUU	chr10:102295604-102295902(+)$1	298	74	77	8.9999
cuu	chr21:38456442-38456692(+)$1	250	138	141	8.9999
CUU	chr13:25086735-25086953(-)$1	218	182	185	8.9999
CUU	chr22:41682022-41682298(-)$1	276	76	79	8.9999
CUU	chrX:48456243-48456561(+)$1	318	61	64	8.9999
CUU	chr17:4442953-4443257(-)$1	304	82	85	8.9999
CUU	chr12:72057096-72057387(-)$1	291	211	214	8.9999
CUU	chr16:31049334-31049596(+)$1	262	86	89	8.9999
CUU	chr16:24550966-24551205(+)$1	239	63	66	8.9999
CUU	chr1:90309106-90309420(+)$1	314	1	4	8.9999
CUU	chr1:27250525-27250772(+)$1	247	29	32	8.9999
CUU	chr7:111846045-111846332(-)$1	287	131	134	8.9999
CUU	chr11:18034085-18034393(-)$1	308	82	85	8.9999
CUU	chr16:2570912-2571166(+)$1	254	51	54	8.9999
CUU	chr15:28517951-28518230(-)$1	279	34	37	8.9999
CUU	chr6:30594545-30594855(+)$1	310	251	254	8.9999
CUU	chr15:89862387-89862671(-)$1	284	23	26	8.9999
CUU	chr16:69782742-69783008(-)$1	266	175	178	8.9999
CUU	chr2:27592618-27592864(-)$1	246	53	56	8.9999
CUU	chr9:37974516-37974778(-)$1	262	4	7	8.9999
CUU	chr17:73897831-73898102(-)$1	271	8	11	8.9999
CUU	chr13:111329219-111329525(-)$1	306	40	43	8.9999
CUU	chr21:40555054-40555390(-)$1	336	93	96	8.9999
CUU	chr16:8768376-8768727(+)$1	351	214	217	8.9999
cuu	chr3:15091152-15091416(-)$1	264	53	56	8.9999
CUU	chr9:116999204-116999411(+)$1	207	17	20	8.9999
CUU	chrX:41193334-41193613(+)$1	279	36	39	8.9999
CUU	chr3:56716848-56717148(-)$1	300	52	55	8.9999
CUU	chr11:63953566-63953879(+)$1	313	78	81	8.9999
CUU	chr2:44065064-44065316(-)$1	252	174	177	8.9999
CUU	chr17:79652590-79652864(+)$1	274	20	23	8.9999
CUU	chr11:801849-802148(-)$1	299	46	49	8.9999
CUU	chr16:67596399-67596736(+)$1	337	105	108	8.9999
CUU	chr16:22337129-22337424(+)$1	295	165	168	8.9999
CUU	chr17:2267251-2267528(+)$1	277	1	4	8.9999
CUU	chr11:64545729-64546103(-)$1	374	7	10	8.9999
CUU	chr14:73577436-73577683(+)$1	247	6	9	8.9999

#otherMatches

#Struct PSSM
:::	chr3:183882010-183882273(+)$1	263	37	40	8.9999
{EE	chr6:43465517-43465811(+)$1	294	9	12	8.9999
GG{	chr6:36936493-36936753(-)$1	260	11	14	8.9999
CCC	chr11:70275118-70275406(+)$1	288	26	29	8.9999
ee!	chr16:67979568-67979782(-)$1	214	125	128	8.9999
~~~	chr11:124492795-124493094(+)$1	299	132	135	8.9999
:::	chr19:1249783-1250071(+)$1	288	76	79	8.9999
FFF	chr9:117002401-117002642(+)$1	241	54	57	8.9999
:EE	chr5:179151630-179151878(+)$1	248	9	12	8.9999
www	chr14:35099015-35099279(-)$1	264	60	63	8.9999
333	chr17:45727650-45727873(+)$1	223	86	89	8.9999
===	chr20:61569043-61569295(-)$1	252	155	158	8.9999
ccc	chr17:53398020-53398294(+)$1	274	150	153	8.9999
sss	chr1:39456853-39457114(+)$1	261	14	17	8.9999
DDD	chr16:31202194-31202424(+)$1	230	14	17	8.9999
:ee	chr15:49913144-49913444(+)$1	300	20	23	8.9999
JJJ	chr14:34931260-34931545(-)$1	285	68	71	8.9999
FFF	chr12:120884181-120884466(+)$1	285	129	132	8.9999
:::	chr16:89865472-89865729(-)$1	257	83	86	8.9999
GLL	chr21:48055482-48055854(+)$1	372	18	21	8.9999
]cc	chr3:49823795-49824058(-)$1	263	36	39	8.9999
>>>	chr9:139722857-139723099(+)$1	242	113	116	8.9999
hh!	chr3:9730534-9730856(+)$1	322	8	11	8.9999
e::	chr2:61404603-61404871(+)$1	268	14	17	8.9999
ooo	chr21:47556778-47557001(-)$1	223	79	82	8.9999
ddd	chr2:43019518-43019812(-)$1	294	46	49	8.9999
dd4	chr17:79988110-79988394(+)$1	284	69	72	8.9999
fff	chr12:109125090-109125390(-)$1	300	128	131	8.9999
ddm	chr19:19102048-19102307(-)$1	259	38	41	8.9999
hhh	chr10:70515028-70515332(+)$1	304	22	25	8.9999
gmm	chr12:132605884-132606193(+)$1	309	94	97	8.9999
eed	chr9:117051425-117051671(+)$1	246	69	72	8.9999
I}D	chr14:35344239-35344511(-)$1	272	122	125	8.9999
fff	chr9:117068700-117068905(+)$1	205	38	41	8.9999
&&&	chr19:58757599-58757877(+)$1	278	78	81	8.9999
f''	chr8:131370121-131370397(-)$1	276	83	86	8.9999
EEE	chr17:4575228-4575572(-)$1	344	13	16	8.9999
fff	chr15:75659810-75660071(-)$1	261	0	3	8.9999
ann	chr9:117027245-117027482(+)$1	237	57	60	8.9999
777	chr22:50685011-50685263(-)$1	252	89	92	8.9999
EMM	chr9:117052989-117053200(+)$1	211	7	10	8.9999
:FF	chr12:123001775-123002072(-)$1	297	0	3	8.9999
III	chr2:231577641-231578049(+)$1	408	352	355	8.9999
d33	chr17:56081117-56081377(-)$1	260	49	52	8.9999
DKK	chr7:99696823-99697104(-)$1	281	25	28	8.9999
!!c	chr14:24034750-24034999(-)$1	249	37	40	8.9999
EEE	chr7:134632323-134632624(+)$1	301	17	20	8.9999
ddd	chr1:244998896-244999220(+)$1	324	64	67	8.9999
dd[	chr9:117005690-117005900(+)$1	210	25	28	8.9999
===	chr14:24632100-24632356(+)$1	256	49	52	8.9999
fff	chr16:31200914-31201184(+)$1	270	34	37	8.9999
JJJ	chr20:57234574-57234790(+)$1	216	21	24	8.9999
E{C	chrX:48433852-48434098(+)$1	246	17	20	8.9999
III	chr12:124093131-124093468(+)$1	337	2	5	8.9999
FFb	chr14:21730638-21730880(-)$1	242	87	90	8.9999
:::	chr1:70697481-70697752(+)$1	271	16	19	8.9999
ccc	chr7:148984631-148985022(+)$1	391	7	10	8.9999
ffl	chr10:102295604-102295902(+)$1	298	74	77	8.9999
eee	chr21:38456442-38456692(+)$1	250	138	141	8.9999
FFF	chr13:25086735-25086953(-)$1	218	182	185	8.9999
hhh	chr22:41682022-41682298(-)$1	276	76	79	8.9999
ggg	chrX:48456243-48456561(+)$1	318	61	64	8.9999
ggg	chr17:4442953-4443257(-)$1	304	82	85	8.9999
H::	chr12:72057096-72057387(-)$1	291	211	214	8.9999
bb!	chr16:31049334-31049596(+)$1	262	86	89	8.9999
e22	chr16:24550966-24551205(+)$1	239	63	66	8.9999
CCC	chr1:90309106-90309420(+)$1	314	1	4	8.9999
EEE	chr1:27250525-27250772(+)$1	247	29	32	8.9999
hhh	chr7:111846045-111846332(-)$1	287	131	134	8.9999
ggg	chr11:18034085-18034393(-)$1	308	82	85	8.9999
EEE	chr16:2570912-2571166(+)$1	254	51	54	8.9999
JJJ	chr15:28517951-28518230(-)$1	279	34	37	8.9999
JJJ	chr6:30594545-30594855(+)$1	310	251	254	8.9999
eee	chr15:89862387-89862671(-)$1	284	23	26	8.9999
cc[	chr16:69782742-69783008(-)$1	266	175	178	8.9999
cll	chr2:27592618-27592864(-)$1	246	53	56	8.9999
:::	chr9:37974516-37974778(-)$1	262	4	7	8.9999
DDD	chr17:73897831-73898102(-)$1	271	8	11	8.9999
acc	chr13:111329219-111329525(-)$1	306	40	43	8.9999
ddm	chr21:40555054-40555390(-)$1	336	93	96	8.9999
GGG	chr16:8768376-8768727(+)$1	351	214	217	8.9999
fff	chr3:15091152-15091416(-)$1	264	53	56	8.9999
+++	chr9:116999204-116999411(+)$1	207	17	20	8.9999
dd$	chrX:41193334-41193613(+)$1	279	36	39	8.9999
iii	chr3:56716848-56717148(-)$1	300	52	55	8.9999
eee	chr11:63953566-63953879(+)$1	313	78	81	8.9999
ssf	chr2:44065064-44065316(-)$1	252	174	177	8.9999
e!!	chr17:79652590-79652864(+)$1	274	20	23	8.9999
ee[	chr11:801849-802148(-)$1	299	46	49	8.9999
fff	chr16:67596399-67596736(+)$1	337	105	108	8.9999
eee	chr16:22337129-22337424(+)$1	295	165	168	8.9999
cca	chr17:2267251-2267528(+)$1	277	1	4	8.9999
:::	chr11:64545729-64546103(-)$1	374	7	10	8.9999
JJJ	chr14:73577436-73577683(+)$1	247	6	9	8.9999

#DB
...	chr3:183882010-183882273(+)$1	1	37	40	8.9999
.((	chr6:43465517-43465811(+)$1	1	9	12	8.9999
((.	chr6:36936493-36936753(-)$1	1	11	14	8.9999
(((	chr11:70275118-70275406(+)$1	1	26	29	8.9999
((.	chr16:67979568-67979782(-)$1	1	125	128	8.9999
...	chr11:124492795-124493094(+)$1	1	132	135	8.9999
...	chr19:1249783-1250071(+)$1	1	76	79	8.9999
(((	chr9:117002401-117002642(+)$1	1	54	57	8.9999
.((	chr5:179151630-179151878(+)$1	1	9	12	8.9999
...	chr14:35099015-35099279(-)$1	1	60	63	8.9999
...	chr17:45727650-45727873(+)$1	1	86	89	8.9999
(((	chr20:61569043-61569295(-)$1	1	155	158	8.9999
)))	chr17:53398020-53398294(+)$1	1	150	153	8.9999
...	chr1:39456853-39457114(+)$1	1	14	17	8.9999
(((	chr16:31202194-31202424(+)$1	1	14	17	8.9999
.((	chr15:49913144-49913444(+)$1	1	20	23	8.9999
(((	chr14:34931260-34931545(-)$1	1	68	71	8.9999
(((	chr12:120884181-120884466(+)$1	1	129	132	8.9999
...	chr16:89865472-89865729(-)$1	1	83	86	8.9999
(..	chr21:48055482-48055854(+)$1	1	18	21	8.9999
.))	chr3:49823795-49824058(-)$1	1	36	39	8.9999
...	chr9:139722857-139723099(+)$1	1	113	116	8.9999
((.	chr3:9730534-9730856(+)$1	1	8	11	8.9999
)..	chr2:61404603-61404871(+)$1	1	14	17	8.9999
...	chr21:47556778-47557001(-)$1	1	79	82	8.9999
(((	chr2:43019518-43019812(-)$1	1	46	49	8.9999
)).	chr17:79988110-79988394(+)$1	1	69	72	8.9999
(((	chr12:109125090-109125390(-)$1	1	128	131	8.9999
((.	chr19:19102048-19102307(-)$1	1	38	41	8.9999
)))	chr10:70515028-70515332(+)$1	1	22	25	8.9999
(..	chr12:132605884-132606193(+)$1	1	94	97	8.9999
(((	chr9:117051425-117051671(+)$1	1	69	72	8.9999
).)	chr14:35344239-35344511(-)$1	1	122	125	8.9999
(((	chr9:117068700-117068905(+)$1	1	38	41	8.9999
...	chr19:58757599-58757877(+)$1	1	78	81	8.9999
(..	chr8:131370121-131370397(-)$1	1	83	86	8.9999
(((	chr17:4575228-4575572(-)$1	1	13	16	8.9999
(((	chr15:75659810-75660071(-)$1	1	0	3	8.9999
(..	chr9:117027245-117027482(+)$1	1	57	60	8.9999
...	chr22:50685011-50685263(-)$1	1	89	92	8.9999
(..	chr9:117052989-117053200(+)$1	1	7	10	8.9999
.((	chr12:123001775-123002072(-)$1	1	0	3	8.9999
)))	chr2:231577641-231578049(+)$1	1	352	355	8.9999
)..	chr17:56081117-56081377(-)$1	1	49	52	8.9999
(..	chr7:99696823-99697104(-)$1	1	25	28	8.9999
..(	chr14:24034750-24034999(-)$1	1	37	40	8.9999
(((	chr7:134632323-134632624(+)$1	1	17	20	8.9999
)))	chr1:244998896-244999220(+)$1	1	64	67	8.9999
((.	chr9:117005690-117005900(+)$1	1	25	28	8.9999
)))	chr14:24632100-24632356(+)$1	1	49	52	8.9999
)))	chr16:31200914-31201184(+)$1	1	34	37	8.9999
(((	chr20:57234574-57234790(+)$1	1	21	24	8.9999
(.(	chrX:48433852-48434098(+)$1	1	17	20	8.9999
(((	chr12:124093131-124093468(+)$1	1	2	5	8.9999
(((	chr14:21730638-21730880(-)$1	1	87	90	8.9999
...	chr1:70697481-70697752(+)$1	1	16	19	8.9999
(((	chr7:148984631-148985022(+)$1	1	7	10	8.9999
((.	chr10:102295604-102295902(+)$1	1	74	77	8.9999
)))	chr21:38456442-38456692(+)$1	1	138	141	8.9999
)))	chr13:25086735-25086953(-)$1	1	182	185	8.9999
)))	chr22:41682022-41682298(-)$1	1	76	79	8.9999
)))	chrX:48456243-48456561(+)$1	1	61	64	8.9999
(((	chr17:4442953-4443257(-)$1	1	82	85	8.9999
(..	chr12:72057096-72057387(-)$1	1	211	214	8.9999
((.	chr16:31049334-31049596(+)$1	1	86	89	8.9999
)..	chr16:24550966-24551205(+)$1	1	63	66	8.9999
(((	chr1:90309106-90309420(+)$1	1	1	4	8.9999
(((	chr1:27250525-27250772(+)$1	1	29	32	8.9999
)))	chr7:111846045-111846332(-)$1	1	131	134	8.9999
)))	chr11:18034085-18034393(-)$1	1	82	85	8.9999
(((	chr16:2570912-2571166(+)$1	1	51	54	8.9999
(((	chr15:28517951-28518230(-)$1	1	34	37	8.9999
)))	chr6:30594545-30594855(+)$1	1	251	254	8.9999
(((	chr15:89862387-89862671(-)$1	1	23	26	8.9999
((.	chr16:69782742-69783008(-)$1	1	175	178	8.9999
(..	chr2:27592618-27592864(-)$1	1	53	56	8.9999
...	chr9:37974516-37974778(-)$1	1	4	7	8.9999
(((	chr17:73897831-73898102(-)$1	1	8	11	8.9999
)))	chr13:111329219-111329525(-)$1	1	40	43	8.9999
((.	chr21:40555054-40555390(-)$1	1	93	96	8.9999
(((	chr16:8768376-8768727(+)$1	1	214	217	8.9999
(((	chr3:15091152-15091416(-)$1	1	53	56	8.9999
...	chr9:116999204-116999411(+)$1	1	17	20	8.9999
((.	chrX:41193334-41193613(+)$1	1	36	39	8.9999
)))	chr3:56716848-56717148(-)$1	1	52	55	8.9999
(((	chr11:63953566-63953879(+)$1	1	78	81	8.9999
..)	chr2:44065064-44065316(-)$1	1	174	177	8.9999
(..	chr17:79652590-79652864(+)$1	1	20	23	8.9999
((.	chr11:801849-802148(-)$1	1	46	49	8.9999
)))	chr16:67596399-67596736(+)$1	1	105	108	8.9999
)))	chr16:22337129-22337424(+)$1	1	165	168	8.9999
(((	chr17:2267251-2267528(+)$1	1	1	4	8.9999
...	chr11:64545729-64546103(-)$1	1	7	10	8.9999
(((	chr14:73577436-73577683(+)$1	1	6	9	8.9999

#PSSM
C : 0.94	c : 0.05	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	

#score	845.9999999999998
#seq	94
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_UTR_m2_run2.nuc.txt

#NT
UUUAUUU	chr6:160199936-160200159(-)$1	223	95	102	17.8750
UUUACUU	chr9:91931381-91931601(+)$1	220	200	207	13.8906
UUUAAUU	chr7:45139610-45139854(-)$1	244	96	103	13.8906
UUUAUUU	chr8:110355696-110355942(+)$1	246	41	48	17.8750
UUUAUUU	chr8:97247636-97247868(-)$1	232	175	182	17.8750
uuuauuu	chrX:49370518-49370778(+)$1	260	216	223	17.8750
uuuaauu	chr19:2273272-2273505(+)$1	233	23	30	13.8906
UUUAUUU	chr11:75116572-75116787(+)$1	215	70	77	17.8750
UUUAGUU	chr19:48886111-48886354(-)$1	243	41	48	13.9687
UUUAUUU	chr8:101734098-101734313(-)$1	215	154	161	17.8750
uuuguuu	chr1:167511230-167511485(-)$1	255	76	83	14.5156
GUUAUUU	chr9:110092550-110092797(+)$1	247	74	81	13.8125
uucauuu	chr1:39329349-39329592(-)$1	243	154	161	13.1093
UUUAUUU	chr14:35871037-35871251(-)$1	214	85	92	17.8750
UUUCUUU	chr4:39460410-39460631(-)$1	221	97	104	14.5937
UUUGUUU	chr1:67452365-67452604(+)$1	239	77	84	14.5156
UUUAAUU	chr21:27096715-27096947(-)$1	232	98	105	13.8906
uuuauuu	chr1:206760311-206760602(+)$1	291	34	41	17.8750
UUUAUUU	chr14:102547692-102547921(-)$1	229	88	95	17.8750
UUUCUUU	chr17:46698539-46698781(-)$1	242	106	113	14.5937
UUGAUUU	chr17:37687895-37688149(+)$1	254	45	52	13.1093
CUUAUUU	chr12:53692952-53693226(+)$1	274	83	90	13.8125
UUUAUUU	chr6:32135988-32136254(-)$1	266	48	55	17.8750
UUUAUUU	chr12:57106469-57106683(-)$1	214	171	178	17.8750
UUUACUU	chr14:104378802-104379050(-)$1	248	53	60	13.8906
UUUAUUU	chr11:64532061-64532309(-)$1	248	240	247	17.8750
UUUAUUU	chr16:2570003-2570271(+)$1	268	30	37	17.8750
uuuuuuu	chr16:31202703-31202921(+)$1	218	0	7	14.5156
UUUAUUU	chr3:49052831-49053084(+)$1	253	109	116	17.8750
UUUUUUU	chr16:2088193-2088440(+)$1	247	154	161	14.5156
UUUCUUU	chr1:8045195-8045408(+)$1	213	173	180	14.5937
UUUAUUU	chr19:14198785-14199033(-)$1	248	151	158	17.8750
AUUAUUU	chr9:131018189-131018422(-)$1	233	180	187	13.8125
UUUUUUU	chr14:50050220-50050485(-)$1	265	23	30	14.5156
UUUGUUU	chr8:42263221-42263483(+)$1	262	239	246	14.5156
UUUAUUU	chr16:56395291-56395531(-)$1	240	25	32	17.8750
UUUUUUU	chr20:5095609-5095832(-)$1	223	43	50	14.5156
UUUAUAU	chr17:37009212-37009420(-)$1	208	49	56	13.3437
AUUAUUU	chr13:100215326-100215591(+)$1	265	79	86	13.8125
UUUAGUU	chr3:52741895-52742155(+)$1	260	46	53	13.9687
UUUGUUU	chr12:56556532-56556796(-)$1	264	6	13	14.5156
UUUAUAU	chr7:72983975-72984224(-)$1	249	96	103	13.3437
UUUAUUU	chr3:98298289-98298571(-)$1	282	108	115	17.8750
UUUAUUU	chr9:37780400-37780670(-)$1	270	227	234	17.8750
UUUCUUU	chr9:100362107-100362417(+)$1	310	64	71	14.5937
UUUAUUU	chr17:27076926-27077170(+)$1	244	98	105	17.8750
uuuauuu	chr7:100276498-100276746(+)$1	248	233	240	17.8750
UUUAUUU	chrX:151995947-151996219(-)$1	272	228	235	17.8750
CUUAUUU	chr21:39494305-39494530(+)$1	225	80	87	13.8125
guuauuu	chr1:89445937-89446185(-)$1	248	240	247	13.8125
UUUAUAU	chr1:220321137-220321371(+)$1	234	169	176	13.3437
CUUAUUU	chr5:176758774-176759003(-)$1	229	6	13	13.8125
UUUGUUU	chr2:42578202-42578431(-)$1	229	93	100	14.5156
uuuuuuu	chr8:109245674-109245916(-)$1	242	0	7	14.5156
GUUAUUU	chr15:75212604-75212855(-)$1	251	3	10	13.8125
UUUAUUU	chr8:11696100-11696386(+)$1	286	95	102	17.8750
uuucuuu	chr16:29974345-29974605(+)$1	260	22	29	14.5937
AUUAUUU	chr8:97243071-97243319(-)$1	248	106	113	13.8125
UUUAUUU	chr10:73992921-73993132(+)$1	211	144	151	17.8750
UUUAGUU	chr17:73315855-73316133(-)$1	278	76	83	13.9687
UUUACUU	chr10:105151849-105152100(-)$1	251	36	43	13.8906
UUUCUUU	chr19:6413763-6414016(-)$1	253	96	103	14.5937
UUUAGUU	chrX:71496948-71497155(-)$1	207	121	128	13.9687

#otherMatches

#Struct PSSM
dddpppp	chr20:35869721-35869960(+)$1	239	91	98	17.8750
:::::::	chr6:160199936-160200159(-)$1	223	95	102	17.8750
888iiii	chr9:91931381-91931601(+)$1	220	200	207	13.8906
:::::::	chr7:45139610-45139854(-)$1	244	96	103	13.8906
ggggggg	chr8:110355696-110355942(+)$1	246	41	48	17.8750
c777777	chr8:97247636-97247868(-)$1	232	175	182	17.8750
::fffff	chrX:49370518-49370778(+)$1	260	216	223	17.8750
HHHH:::	chr19:2273272-2273505(+)$1	233	23	30	13.8906
"""dddd	chr11:75116572-75116787(+)$1	215	70	77	17.8750
[ddddrr	chr19:48886111-48886354(-)$1	243	41	48	13.9687
fffff^^	chr8:101734098-101734313(-)$1	215	154	161	17.8750
coooooo	chr1:167511230-167511485(-)$1	255	76	83	14.5156
"cccggg	chr9:110092550-110092797(+)$1	247	74	81	13.8125
eeeee^^	chr1:39329349-39329592(-)$1	243	154	161	13.1093
ggg[ggg	chr14:35871037-35871251(-)$1	214	85	92	17.8750
gg[ffff	chr4:39460410-39460631(-)$1	221	97	104	14.5937
ffff===	chr1:67452365-67452604(+)$1	239	77	84	14.5156
ccc]ggg	chr21:27096715-27096947(-)$1	232	98	105	13.8906
^^^^^^^	chr1:206760311-206760602(+)$1	291	34	41	17.8750
dddd[cc	chr14:102547692-102547921(-)$1	229	88	95	17.8750
:::::::	chr17:46698539-46698781(-)$1	242	106	113	14.5937
:::::::	chr17:37687895-37688149(+)$1	254	45	52	13.1093
hhhhhhh	chr12:53692952-53693226(+)$1	274	83	90	13.8125
^^^^^^^	chr6:32135988-32136254(-)$1	266	48	55	17.8750
eeee!!c	chr12:57106469-57106683(-)$1	214	171	178	17.8750
:::::::	chr14:104378802-104379050(-)$1	248	53	60	13.8906
eeeee::	chr11:64532061-64532309(-)$1	248	240	247	17.8750
ddddmmm	chr16:2570003-2570271(+)$1	268	30	37	17.8750
:::::::	chr16:31202703-31202921(+)$1	218	0	7	14.5156
77eeeee	chr3:49052831-49053084(+)$1	253	109	116	17.8750
iiiiiii	chr16:2088193-2088440(+)$1	247	154	161	14.5156
eeeeooo	chr1:8045195-8045408(+)$1	213	173	180	14.5937
333gggg	chr19:14198785-14199033(-)$1	248	151	158	17.8750
ppppphh	chr9:131018189-131018422(-)$1	233	180	187	13.8125
:::::::	chr14:50050220-50050485(-)$1	265	23	30	14.5156
ZEEEEEZ	chr8:42263221-42263483(+)$1	262	239	246	14.5156
"ddddmm	chr16:56395291-56395531(-)$1	240	25	32	17.8750
d::::::	chr20:5095609-5095832(-)$1	223	43	50	14.5156
^^^^^^^	chr17:37009212-37009420(-)$1	208	49	56	13.3437
foooooo	chr13:100215326-100215591(+)$1	265	79	86	13.8125
"""cccr	chr3:52741895-52742155(+)$1	260	46	53	13.9687
FFF{EEE	chr12:56556532-56556796(-)$1	264	6	13	14.5156
nnnnncc	chr7:72983975-72984224(-)$1	249	96	103	13.3437
:GGGGGG	chr3:98298289-98298571(-)$1	282	108	115	17.8750
JJJJJJJ	chr9:37780400-37780670(-)$1	270	227	234	17.8750
==hhhhh	chr9:100362107-100362417(+)$1	310	64	71	14.5937
"cccooo	chr17:27076926-27077170(+)$1	244	98	105	17.8750
:::::::	chr7:100276498-100276746(+)$1	248	233	240	17.8750
EEYYEEE	chrX:151995947-151996219(-)$1	272	228	235	17.8750
c22ccc2	chr21:39494305-39494530(+)$1	225	80	87	13.8125
DDD::::	chr1:89445937-89446185(-)$1	248	240	247	13.8125
ffffffl	chr1:220321137-220321371(+)$1	234	169	176	13.3437
DDDNNNN	chr5:176758774-176759003(-)$1	229	6	13	13.8125
=======	chr2:42578202-42578431(-)$1	229	93	100	14.5156
:::JJJJ	chr8:109245674-109245916(-)$1	242	0	7	14.5156
FFFFFF{	chr15:75212604-75212855(-)$1	251	3	10	13.8125
^^^^^^^	chr8:11696100-11696386(+)$1	286	95	102	17.8750
JJJJ:::	chr16:29974345-29974605(+)$1	260	22	29	14.5937
hhhhhhh	chr8:97243071-97243319(-)$1	248	106	113	13.8125
fffeeee	chr10:73992921-73993132(+)$1	211	144	151	17.8750
hhhhhhh	chr17:73315855-73316133(-)$1	278	76	83	13.9687
ee:::::	chr10:105151849-105152100(-)$1	251	36	43	13.8906
HHH::ee	chr19:6413763-6414016(-)$1	253	96	103	14.5937
d333ddd	chrX:71496948-71497155(-)$1	207	121	128	13.9687

#DB
(((....	chr20:35869721-35869960(+)$1	1	91	98	17.8750
.......	chr6:160199936-160200159(-)$1	1	95	102	17.8750
...))))	chr9:91931381-91931601(+)$1	1	200	207	13.8906
.......	chr7:45139610-45139854(-)$1	1	96	103	13.8906
(((((((	chr8:110355696-110355942(+)$1	1	41	48	17.8750
)......	chr8:97247636-97247868(-)$1	1	175	182	17.8750
..(((((	chrX:49370518-49370778(+)$1	1	216	223	17.8750
((((...	chr19:2273272-2273505(+)$1	1	23	30	13.8906
...((((	chr11:75116572-75116787(+)$1	1	70	77	17.8750
.((((..	chr19:48886111-48886354(-)$1	1	41	48	13.9687
(((((..	chr8:101734098-101734313(-)$1	1	154	161	17.8750
(......	chr1:167511230-167511485(-)$1	1	76	83	14.5156
.((((((	chr9:110092550-110092797(+)$1	1	74	81	13.8125
(((((..	chr1:39329349-39329592(-)$1	1	154	161	13.1093
(((.(((	chr14:35871037-35871251(-)$1	1	85	92	17.8750
((.((((	chr4:39460410-39460631(-)$1	1	97	104	14.5937
)))))))	chr1:67452365-67452604(+)$1	1	77	84	14.5156
))).)))	chr21:27096715-27096947(-)$1	1	98	105	13.8906
.......	chr1:206760311-206760602(+)$1	1	34	41	17.8750
((((.((	chr14:102547692-102547921(-)$1	1	88	95	17.8750
.......	chr17:46698539-46698781(-)$1	1	106	113	14.5937
.......	chr17:37687895-37688149(+)$1	1	45	52	13.1093
(((((((	chr12:53692952-53693226(+)$1	1	83	90	13.8125
.......	chr6:32135988-32136254(-)$1	1	48	55	17.8750
((((..(	chr12:57106469-57106683(-)$1	1	171	178	17.8750
.......	chr14:104378802-104379050(-)$1	1	53	60	13.8906
)))))..	chr11:64532061-64532309(-)$1	1	240	247	17.8750
((((...	chr16:2570003-2570271(+)$1	1	30	37	17.8750
.......	chr16:31202703-31202921(+)$1	1	0	7	14.5156
..)))))	chr3:49052831-49053084(+)$1	1	109	116	17.8750
)))))))	chr16:2088193-2088440(+)$1	1	154	161	14.5156
((((...	chr1:8045195-8045408(+)$1	1	173	180	14.5937
...))))	chr19:14198785-14199033(-)$1	1	151	158	17.8750
.....))	chr9:131018189-131018422(-)$1	1	180	187	13.8125
.......	chr14:50050220-50050485(-)$1	1	23	30	14.5156
.))))).	chr8:42263221-42263483(+)$1	1	239	246	14.5156
.((((..	chr16:56395291-56395531(-)$1	1	25	32	17.8750
)......	chr20:5095609-5095832(-)$1	1	43	50	14.5156
.......	chr17:37009212-37009420(-)$1	1	49	56	13.3437
(......	chr13:100215326-100215591(+)$1	1	79	86	13.8125
...(((.	chr3:52741895-52742155(+)$1	1	46	53	13.9687
(((.(((	chr12:56556532-56556796(-)$1	1	6	13	14.5156
.....))	chr7:72983975-72984224(-)$1	1	96	103	13.3437
.((((((	chr3:98298289-98298571(-)$1	1	108	115	17.8750
)))))))	chr9:37780400-37780670(-)$1	1	227	234	17.8750
))(((((	chr9:100362107-100362417(+)$1	1	64	71	14.5937
.(((...	chr17:27076926-27077170(+)$1	1	98	105	17.8750
.......	chr7:100276498-100276746(+)$1	1	233	240	17.8750
))..)))	chrX:151995947-151996219(-)$1	1	228	235	17.8750
)..))).	chr21:39494305-39494530(+)$1	1	80	87	13.8125
)))....	chr1:89445937-89446185(-)$1	1	240	247	13.8125
((((((.	chr1:220321137-220321371(+)$1	1	169	176	13.3437
(((....	chr5:176758774-176759003(-)$1	1	6	13	13.8125
)))))))	chr2:42578202-42578431(-)$1	1	93	100	14.5156
...((((	chr8:109245674-109245916(-)$1	1	0	7	14.5156
((((((.	chr15:75212604-75212855(-)$1	1	3	10	13.8125
.......	chr8:11696100-11696386(+)$1	1	95	102	17.8750
((((...	chr16:29974345-29974605(+)$1	1	22	29	14.5937
)))))))	chr8:97243071-97243319(-)$1	1	106	113	13.8125
(((((((	chr10:73992921-73993132(+)$1	1	144	151	17.8750
(((((((	chr17:73315855-73316133(-)$1	1	76	83	13.9687
)).....	chr10:105151849-105152100(-)$1	1	36	43	13.8906
(((..((	chr19:6413763-6414016(-)$1	1	96	103	14.5937
)...)))	chrX:71496948-71497155(-)$1	1	121	128	13.9687

#PSSM
U : 0.71	u : 0.14	C : 0.04	A : 0.04	G : 0.03	g : 0.01	
U : 0.84	u : 0.15	
U : 0.82	u : 0.14	c : 0.01	G : 0.01	
A : 0.65	a : 0.09	C : 0.07	G : 0.06	U : 0.04	u : 0.03	g : 0.01	c : 0.01	
U : 0.70	u : 0.14	G : 0.06	C : 0.04	A : 0.03	a : 0.01	
U : 0.79	u : 0.15	A : 0.04	
U : 0.84	u : 0.15	

#score	991.5
#seq	64
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_CDS_m1_run1.nuc.txt

#NT
GGAGG	chrX:152958616-152958822(+)$1	206	21	26	14.9999
GGAGG	chr15:60643288-60643527(-)$1	239	223	228	14.9999
GGAGG	chr6:170844321-170844572(-)$1	251	234	239	14.9999
GGAGG	chr15:91010624-91010887(+)$1	263	134	139	14.9999
GGAGG	chr16:106438-106652(+)$1	214	111	116	14.9999
GGAGG	chr19:18499570-18499835(+)$1	265	207	212	14.9999
GGAGG	chr19:49952631-49952862(-)$1	231	42	47	14.9999
GGAGG	chr14:23945161-23945367(+)$1	206	93	98	14.9999
ggagg	chr17:73898077-73898335(-)$1	258	41	46	14.9999
GGAGG	chr1:8923982-8924193(-)$1	211	2	7	14.9999
GGAGG	chr6:44219704-44219946(+)$1	242	182	187	14.9999
GGAGG	chr17:4793712-4794007(+)$1	295	119	124	14.9999
GGAGG	chr22:18185053-18185265(+)$1	212	56	61	14.9999
GGAGG	chr1:32504099-32504311(+)$1	212	166	171	14.9999
GGAGG	chrX:154464448-154464713(+)$1	265	150	155	14.9999
GGAGG	chr1:206781512-206781773(-)$1	261	53	58	14.9999
GGAGG	chr17:73839166-73839393(-)$1	227	120	125	14.9999
GGAGG	chr6:159190715-159190939(-)$1	224	0	5	14.9999
GGAGG	chr1:180257395-180257655(-)$1	260	94	99	14.9999
GGAGG	chr8:87568320-87568620(+)$1	300	123	128	14.9999
GGAGG	chr6:114277092-114277391(-)$1	299	129	134	14.9999
GGAGG	chr22:42463046-42463358(-)$1	312	11	16	14.9999
GGAGG	chr6:160201866-160202084(-)$1	218	47	52	14.9999
GGAGG	chr6:7405073-7405324(+)$1	251	87	92	14.9999
GGAGG	chr11:108017946-108018269(+)$1	323	129	134	14.9999
GGAGG	chr7:103138240-103138474(-)$1	234	204	209	14.9999
ggagg	chr9:131456120-131456388(+)$1	268	113	118	14.9999
GGAGG	chr5:167932957-167933204(+)$1	247	148	153	14.9999
GGAGG	chr5:118835033-118835331(+)$1	298	170	175	14.9999
GGAGG	chr6:160208765-160209004(-)$1	239	145	150	14.9999
GGAGG	chr17:47123538-47123791(+)$1	253	222	227	14.9999
GGAGG	chr8:146017057-146017259(-)$1	202	137	142	14.9999
GGAGG	chr9:128001395-128001619(-)$1	224	45	50	14.9999
GGAGG	chr6:16278958-16279196(+)$1	238	200	205	14.9999
GGAGG	chr17:41169778-41170040(-)$1	262	5	10	14.9999
GGAGG	chr13:95830157-95830440(-)$1	283	109	114	14.9999
GGAGG	chr10:104121412-104121701(+)$1	289	139	144	14.9999
GGAGG	chr4:185685917-185686177(-)$1	260	182	187	14.9999
GGAGG	chr1:12639222-12639468(-)$1	246	205	210	14.9999
GGAGG	chr17:1559900-1560153(-)$1	253	52	57	14.9999
GGAGG	chr2:10924342-10924553(-)$1	211	109	114	14.9999
GGAGG	chr1:39494461-39494698(+)$1	237	164	169	14.9999
GGAGG	chr17:4700990-4701207(+)$1	217	107	112	14.9999
GGAGG	chr16:30456242-30456512(-)$1	270	18	23	14.9999
GGAGG	chr19:6742906-6743171(+)$1	265	24	29	14.9999

#otherMatches

#Struct PSSM
CCfff	chr1:182354794-182355017(-)$1	223	47	52	14.9999
{GGGG	chrX:152958616-152958822(+)$1	206	21	26	14.9999
]eeee	chr15:60643288-60643527(-)$1	239	223	228	14.9999
GGGGG	chr6:170844321-170844572(-)$1	251	234	239	14.9999
HHHcc	chr15:91010624-91010887(+)$1	263	134	139	14.9999
hhhhh	chr16:106438-106652(+)$1	214	111	116	14.9999
ff]cc	chr19:18499570-18499835(+)$1	265	207	212	14.9999
dd]dd	chr19:49952631-49952862(-)$1	231	42	47	14.9999
f22ff	chr14:23945161-23945367(+)$1	206	93	98	14.9999
ee:ee	chr17:73898077-73898335(-)$1	258	41	46	14.9999
fffff	chr1:8923982-8924193(-)$1	211	2	7	14.9999
2dddd	chr6:44219704-44219946(+)$1	242	182	187	14.9999
GGGGG	chr17:4793712-4794007(+)$1	295	119	124	14.9999
MGGGG	chr22:18185053-18185265(+)$1	212	56	61	14.9999
iiiii	chr1:32504099-32504311(+)$1	212	166	171	14.9999
iiiii	chrX:154464448-154464713(+)$1	265	150	155	14.9999
:eeee	chr1:206781512-206781773(-)$1	261	53	58	14.9999
ee[cc	chr17:73839166-73839393(-)$1	227	120	125	14.9999
:::::	chr6:159190715-159190939(-)$1	224	0	5	14.9999
II{DD	chr1:180257395-180257655(-)$1	260	94	99	14.9999
cc:gg	chr8:87568320-87568620(+)$1	300	123	128	14.9999
cc444	chr6:114277092-114277391(-)$1	299	129	134	14.9999
iiill	chr22:42463046-42463358(-)$1	312	11	16	14.9999
JBBGG	chr6:160201866-160202084(-)$1	218	47	52	14.9999
ee"""	chr6:7405073-7405324(+)$1	251	87	92	14.9999
cceee	chr11:108017946-108018269(+)$1	323	129	134	14.9999
i333b	chr7:103138240-103138474(-)$1	234	204	209	14.9999
:::::	chr9:131456120-131456388(+)$1	268	113	118	14.9999
333ee	chr5:167932957-167933204(+)$1	247	148	153	14.9999
ff22b	chr5:118835033-118835331(+)$1	298	170	175	14.9999
e[fff	chr6:160208765-160209004(-)$1	239	145	150	14.9999
FFFFF	chr17:47123538-47123791(+)$1	253	222	227	14.9999
5555b	chr8:146017057-146017259(-)$1	202	137	142	14.9999
DDDDg	chr9:128001395-128001619(-)$1	224	45	50	14.9999
mbb]e	chr6:16278958-16279196(+)$1	238	200	205	14.9999
:bb[b	chr17:41169778-41170040(-)$1	262	5	10	14.9999
ddd]b	chr13:95830157-95830440(-)$1	283	109	114	14.9999
JJJJJ	chr10:104121412-104121701(+)$1	289	139	144	14.9999
dd]cc	chr4:185685917-185686177(-)$1	260	182	187	14.9999
B}CCC	chr1:12639222-12639468(-)$1	246	205	210	14.9999
ffff!	chr17:1559900-1560153(-)$1	253	52	57	14.9999
cc]gg	chr2:10924342-10924553(-)$1	211	109	114	14.9999
hhhhh	chr1:39494461-39494698(+)$1	237	164	169	14.9999
oeeee	chr17:4700990-4701207(+)$1	217	107	112	14.9999
a!!a!	chr16:30456242-30456512(-)$1	270	18	23	14.9999
eebb[	chr19:6742906-6743171(+)$1	265	24	29	14.9999

#DB
(((((	chr1:182354794-182355017(-)$1	1	47	52	14.9999
.((((	chrX:152958616-152958822(+)$1	1	21	26	14.9999
.))))	chr15:60643288-60643527(-)$1	1	223	228	14.9999
)))))	chr6:170844321-170844572(-)$1	1	234	239	14.9999
)))((	chr15:91010624-91010887(+)$1	1	134	139	14.9999
(((((	chr16:106438-106652(+)$1	1	111	116	14.9999
)).))	chr19:18499570-18499835(+)$1	1	207	212	14.9999
)).))	chr19:49952631-49952862(-)$1	1	42	47	14.9999
)..))	chr14:23945161-23945367(+)$1	1	93	98	14.9999
)).((	chr17:73898077-73898335(-)$1	1	41	46	14.9999
(((((	chr1:8923982-8924193(-)$1	1	2	7	14.9999
.))))	chr6:44219704-44219946(+)$1	1	182	187	14.9999
)))))	chr17:4793712-4794007(+)$1	1	119	124	14.9999
.((((	chr22:18185053-18185265(+)$1	1	56	61	14.9999
)))))	chr1:32504099-32504311(+)$1	1	166	171	14.9999
(((((	chrX:154464448-154464713(+)$1	1	150	155	14.9999
.((((	chr1:206781512-206781773(-)$1	1	53	58	14.9999
((.((	chr17:73839166-73839393(-)$1	1	120	125	14.9999
.....	chr6:159190715-159190939(-)$1	1	0	5	14.9999
((.((	chr1:180257395-180257655(-)$1	1	94	99	14.9999
)).((	chr8:87568320-87568620(+)$1	1	123	128	14.9999
))...	chr6:114277092-114277391(-)$1	1	129	134	14.9999
(((..	chr22:42463046-42463358(-)$1	1	11	16	14.9999
(((((	chr6:160201866-160202084(-)$1	1	47	52	14.9999
((...	chr6:7405073-7405324(+)$1	1	87	92	14.9999
(((((	chr11:108017946-108018269(+)$1	1	129	134	14.9999
)...)	chr7:103138240-103138474(-)$1	1	204	209	14.9999
.....	chr9:131456120-131456388(+)$1	1	113	118	14.9999
...))	chr5:167932957-167933204(+)$1	1	148	153	14.9999
))..)	chr5:118835033-118835331(+)$1	1	170	175	14.9999
(.(((	chr6:160208765-160209004(-)$1	1	145	150	14.9999
)))))	chr17:47123538-47123791(+)$1	1	222	227	14.9999
....)	chr8:146017057-146017259(-)$1	1	137	142	14.9999
(((((	chr9:128001395-128001619(-)$1	1	45	50	14.9999
.)).)	chr6:16278958-16279196(+)$1	1	200	205	14.9999
.((.(	chr17:41169778-41170040(-)$1	1	5	10	14.9999
))).)	chr13:95830157-95830440(-)$1	1	109	114	14.9999
(((((	chr10:104121412-104121701(+)$1	1	139	144	14.9999
)).))	chr4:185685917-185686177(-)$1	1	182	187	14.9999
).)))	chr1:12639222-12639468(-)$1	1	205	210	14.9999
((((.	chr17:1559900-1560153(-)$1	1	52	57	14.9999
)).))	chr2:10924342-10924553(-)$1	1	109	114	14.9999
(((((	chr1:39494461-39494698(+)$1	1	164	169	14.9999
.))))	chr17:4700990-4701207(+)$1	1	107	112	14.9999
(..(.	chr16:30456242-30456512(-)$1	1	18	23	14.9999
((((.	chr19:6742906-6743171(+)$1	1	24	29	14.9999

#PSSM
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	

#score	689.9999999999999
#seq	46
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_transcript_m3_run1.nuc.txt

#NT
CCAGG	chr5:176519447-176519708(+)$1	261	158	163	15.0000
CCAGG	chr2:27258523-27258784(+)$1	261	69	74	15.0000
CCAGG	chr6:43745342-43745629(+)$1	287	129	134	15.0000
CCAGG	chr11:64074902-64075145(+)$1	243	69	74	15.0000
CCAGG	chr10:97416182-97416402(-)$1	220	18	23	15.0000
CCAGg	chr22:23999757-24000018(-)$1	261	132	137	15.0000
ccagg	chr9:134358757-134358998(+)$1	241	231	236	15.0000
CCAGG	chr19:14628739-14629014(-)$1	275	78	83	15.0000
CCAGG	chr20:524126-524398(-)$1	272	98	103	15.0000
CCAGG	chr8:8233591-8233801(-)$1	210	126	131	15.0000
CCAGG	chr9:140346801-140347073(-)$1	272	31	36	15.0000
CCAGG	chr17:80007364-80007612(-)$1	248	117	122	15.0000
CCAGG	chr19:35741483-35741747(+)$1	264	50	55	15.0000
CCAGG	chr17:4916968-4917222(+)$1	254	55	60	15.0000
CCAGG	chr6:31936794-31937051(+)$1	257	99	104	15.0000
CCAGG	chr19:13184767-13185019(+)$1	252	25	30	15.0000
CCAGG	chr20:62331815-62332026(-)$1	211	49	54	15.0000
CCAGG	chr17:80040628-80040867(-)$1	239	113	118	15.0000
CCAGG	chr19:15375950-15376199(-)$1	249	67	72	15.0000
CCAGG	chr19:49994736-49994969(+)$1	233	74	79	15.0000
CCAGG	chr17:3526386-3526633(-)$1	247	115	120	15.0000
CCAGG	chr16:30751952-30752210(+)$1	258	72	77	15.0000
CCAGG	chr16:2511150-2511404(+)$1	254	247	252	15.0000
CCAGG	chr19:581524-581771(+)$1	247	113	118	15.0000
CCAGG	chr1:43396549-43396783(-)$1	234	118	123	15.0000
CCAGG	chr22:50187511-50187753(-)$1	242	11	16	15.0000
CCAGG	chr9:140151429-140151686(+)$1	257	60	65	15.0000
CCAGG	chr2:201828009-201828281(-)$1	272	136	141	15.0000
CCAGG	chr20:40246784-40247052(-)$1	268	212	217	15.0000
CCAGG	chr20:25489229-25489487(-)$1	258	13	18	15.0000
CCAGG	chr1:22216305-22216552(-)$1	247	47	52	15.0000
CCAGG	chr20:36030009-36030300(+)$1	291	219	224	15.0000
CCAGG	chr9:139722921-139723166(+)$1	245	70	75	15.0000
CCAGG	chr3:14166644-14166909(+)$1	265	91	96	15.0000
CCAGG	chr14:69350719-69350959(-)$1	240	71	76	15.0000
CCAGG	chr2:55460504-55460720(+)$1	216	35	40	15.0000
CCAGG	chr8:22415645-22415886(+)$1	241	56	61	15.0000
CCAGG	chr10:120938015-120938264(-)$1	249	240	245	15.0000
CCAGG	chr16:1501409-1501722(-)$1	313	95	100	15.0000
CCAGG	chr17:8339412-8339669(+)$1	257	158	163	15.0000
CCAGG	chr9:117027687-117027932(+)$1	245	38	43	15.0000
CCAGG	chr14:35872733-35872974(-)$1	241	27	32	15.0000
CCAGG	chr10:102733273-102733543(+)$1	270	89	94	15.0000
CCAGG	chr1:17961437-17961709(+)$1	272	146	151	15.0000
CCAGG	chr22:19841775-19842022(-)$1	247	20	25	15.0000
ccagg	chr17:25638582-25638868(+)$1	286	116	121	15.0000
CCAGG	chr12:6442047-6442306(-)$1	259	160	165	15.0000
CCAGG	chr7:128597044-128597336(-)$1	292	11	16	15.0000
CCAGG	chr1:48697236-48697479(+)$1	243	185	190	15.0000
CCAGG	chrX:131623667-131623916(-)$1	249	71	76	15.0000
CCAGG	chr19:40740778-40741039(-)$1	261	124	129	15.0000
CCAGG	chr17:79865241-79865524(-)$1	283	224	229	15.0000
CCAGG	chr19:11558531-11558783(+)$1	252	90	95	15.0000
CCAGG	chr3:58097992-58098245(+)$1	253	90	95	15.0000
CCAGG	chr19:35551646-35551893(+)$1	247	116	121	15.0000
CCAGG	chr1:226373913-226374160(-)$1	247	138	143	15.0000
CCAGG	chr16:279049-279353(-)$1	304	23	28	15.0000
CCAGG	chr14:103800511-103800774(+)$1	263	210	215	15.0000
CCAGG	chr2:55460478-55460704(+)$1	226	61	66	15.0000
CCAGG	chr16:89851067-89851334(-)$1	267	186	191	15.0000

#otherMatches

#Struct PSSM
fffff	chr1:40027565-40027815(-)$1	250	139	144	15.0000
llldd	chr5:176519447-176519708(+)$1	261	158	163	15.0000
#dddd	chr2:27258523-27258784(+)$1	261	69	74	15.0000
ddddd	chr6:43745342-43745629(+)$1	287	129	134	15.0000
$$ddd	chr11:64074902-64075145(+)$1	243	69	74	15.0000
BB{BB	chr10:97416182-97416402(-)$1	220	18	23	15.0000
FFFFF	chr22:23999757-24000018(-)$1	261	132	137	15.0000
GGGGG	chr9:134358757-134358998(+)$1	241	231	236	15.0000
c!!ee	chr19:14628739-14629014(-)$1	275	78	83	15.0000
e22dd	chr20:524126-524398(-)$1	272	98	103	15.0000
:eeee	chr8:8233591-8233801(-)$1	210	126	131	15.0000
J:ccc	chr9:140346801-140347073(-)$1	272	31	36	15.0000
peeee	chr17:80007364-80007612(-)$1	248	117	122	15.0000
fffff	chr19:35741483-35741747(+)$1	264	50	55	15.0000
fffff	chr17:4916968-4917222(+)$1	254	55	60	15.0000
eGGGG	chr6:31936794-31937051(+)$1	257	99	104	15.0000
cc[dd	chr19:13184767-13185019(+)$1	252	25	30	15.0000
leeee	chr20:62331815-62332026(-)$1	211	49	54	15.0000
leeee	chr17:80040628-80040867(-)$1	239	113	118	15.0000
bbnnn	chr19:15375950-15376199(-)$1	249	67	72	15.0000
CDDDD	chr19:49994736-49994969(+)$1	233	74	79	15.0000
CDDDD	chr17:3526386-3526633(-)$1	247	115	120	15.0000
b[ccc	chr16:30751952-30752210(+)$1	258	72	77	15.0000
B::::	chr16:2511150-2511404(+)$1	254	247	252	15.0000
DDDff	chr19:581524-581771(+)$1	247	113	118	15.0000
55ddd	chr1:43396549-43396783(-)$1	234	118	123	15.0000
dllld	chr22:50187511-50187753(-)$1	242	11	16	15.0000
DDDD{	chr9:140151429-140151686(+)$1	257	60	65	15.0000
ooooo	chr2:201828009-201828281(-)$1	272	136	141	15.0000
gg]ii	chr20:40246784-40247052(-)$1	268	212	217	15.0000
E{BBd	chr20:25489229-25489487(-)$1	258	13	18	15.0000
fffff	chr1:22216305-22216552(-)$1	247	47	52	15.0000
ttttb	chr20:36030009-36030300(+)$1	291	219	224	15.0000
mmmma	chr9:139722921-139723166(+)$1	245	70	75	15.0000
cc]dd	chr3:14166644-14166909(+)$1	265	91	96	15.0000
eeeee	chr14:69350719-69350959(-)$1	240	71	76	15.0000
FFFFF	chr2:55460504-55460720(+)$1	216	35	40	15.0000
ffff:	chr8:22415645-22415886(+)$1	241	56	61	15.0000
444dd	chr10:120938015-120938264(-)$1	249	240	245	15.0000
ebbmm	chr16:1501409-1501722(-)$1	313	95	100	15.0000
mmmmc	chr17:8339412-8339669(+)$1	257	158	163	15.0000
uuuuu	chr9:117027687-117027932(+)$1	245	38	43	15.0000
ggggg	chr14:35872733-35872974(-)$1	241	27	32	15.0000
PPPPP	chr10:102733273-102733543(+)$1	270	89	94	15.0000
hhhhh	chr1:17961437-17961709(+)$1	272	146	151	15.0000
cc!!b	chr22:19841775-19842022(-)$1	247	20	25	15.0000
ccddd	chr17:25638582-25638868(+)$1	286	116	121	15.0000
fffbb	chr12:6442047-6442306(-)$1	259	160	165	15.0000
nnnna	chr7:128597044-128597336(-)$1	292	11	16	15.0000
mmccc	chr1:48697236-48697479(+)$1	243	185	190	15.0000
eeeeo	chrX:131623667-131623916(-)$1	249	71	76	15.0000
hhhhh	chr19:40740778-40741039(-)$1	261	124	129	15.0000
eeee#	chr17:79865241-79865524(-)$1	283	224	229	15.0000
DKKCC	chr19:11558531-11558783(+)$1	252	90	95	15.0000
cc[cc	chr3:58097992-58098245(+)$1	253	90	95	15.0000
]dddd	chr19:35551646-35551893(+)$1	247	116	121	15.0000
##ggg	chr1:226373913-226374160(-)$1	247	138	143	15.0000
CCCII	chr16:279049-279353(-)$1	304	23	28	15.0000
}EEEE	chr14:103800511-103800774(+)$1	263	210	215	15.0000
:::::	chr2:55460478-55460704(+)$1	226	61	66	15.0000
EEEEE	chr16:89851067-89851334(-)$1	267	186	191	15.0000

#DB
)))))	chr1:40027565-40027815(-)$1	1	139	144	15.0000
...))	chr5:176519447-176519708(+)$1	1	158	163	15.0000
.((((	chr2:27258523-27258784(+)$1	1	69	74	15.0000
)))))	chr6:43745342-43745629(+)$1	1	129	134	15.0000
..(((	chr11:64074902-64075145(+)$1	1	69	74	15.0000
((.((	chr10:97416182-97416402(-)$1	1	18	23	15.0000
(((((	chr22:23999757-24000018(-)$1	1	132	137	15.0000
)))))	chr9:134358757-134358998(+)$1	1	231	236	15.0000
(..((	chr19:14628739-14629014(-)$1	1	78	83	15.0000
)..))	chr20:524126-524398(-)$1	1	98	103	15.0000
.((((	chr8:8233591-8233801(-)$1	1	126	131	15.0000
(.(((	chr9:140346801-140347073(-)$1	1	31	36	15.0000
.))))	chr17:80007364-80007612(-)$1	1	117	122	15.0000
)))))	chr19:35741483-35741747(+)$1	1	50	55	15.0000
(((((	chr17:4916968-4917222(+)$1	1	55	60	15.0000
)))))	chr6:31936794-31937051(+)$1	1	99	104	15.0000
((.((	chr19:13184767-13185019(+)$1	1	25	30	15.0000
.))))	chr20:62331815-62332026(-)$1	1	49	54	15.0000
.))))	chr17:80040628-80040867(-)$1	1	113	118	15.0000
((...	chr19:15375950-15376199(-)$1	1	67	72	15.0000
)((((	chr19:49994736-49994969(+)$1	1	74	79	15.0000
(((((	chr17:3526386-3526633(-)$1	1	115	120	15.0000
(.(((	chr16:30751952-30752210(+)$1	1	72	77	15.0000
)....	chr16:2511150-2511404(+)$1	1	247	252	15.0000
(((((	chr19:581524-581771(+)$1	1	113	118	15.0000
..)))	chr1:43396549-43396783(-)$1	1	118	123	15.0000
(...)	chr22:50187511-50187753(-)$1	1	11	16	15.0000
((((.	chr9:140151429-140151686(+)$1	1	60	65	15.0000
.....	chr2:201828009-201828281(-)$1	1	136	141	15.0000
)).))	chr20:40246784-40247052(-)$1	1	212	217	15.0000
(.(((	chr20:25489229-25489487(-)$1	1	13	18	15.0000
(((((	chr1:22216305-22216552(-)$1	1	47	52	15.0000
....)	chr20:36030009-36030300(+)$1	1	219	224	15.0000
....)	chr9:139722921-139723166(+)$1	1	70	75	15.0000
)).))	chr3:14166644-14166909(+)$1	1	91	96	15.0000
(((((	chr14:69350719-69350959(-)$1	1	71	76	15.0000
(((((	chr2:55460504-55460720(+)$1	1	35	40	15.0000
)))).	chr8:22415645-22415886(+)$1	1	56	61	15.0000
...))	chr10:120938015-120938264(-)$1	1	240	245	15.0000
(((..	chr16:1501409-1501722(-)$1	1	95	100	15.0000
....)	chr17:8339412-8339669(+)$1	1	158	163	15.0000
.....	chr9:117027687-117027932(+)$1	1	38	43	15.0000
(((((	chr14:35872733-35872974(-)$1	1	27	32	15.0000
.....	chr10:102733273-102733543(+)$1	1	89	94	15.0000
)))))	chr1:17961437-17961709(+)$1	1	146	151	15.0000
((..(	chr22:19841775-19842022(-)$1	1	20	25	15.0000
))(((	chr17:25638582-25638868(+)$1	1	116	121	15.0000
)))))	chr12:6442047-6442306(-)$1	1	160	165	15.0000
....)	chr7:128597044-128597336(-)$1	1	11	16	15.0000
..)))	chr1:48697236-48697479(+)$1	1	185	190	15.0000
((((.	chrX:131623667-131623916(-)$1	1	71	76	15.0000
)))))	chr19:40740778-40741039(-)$1	1	124	129	15.0000
((((.	chr17:79865241-79865524(-)$1	1	224	229	15.0000
(..((	chr19:11558531-11558783(+)$1	1	90	95	15.0000
((.((	chr3:58097992-58098245(+)$1	1	90	95	15.0000
.))))	chr19:35551646-35551893(+)$1	1	116	121	15.0000
..(((	chr1:226373913-226374160(-)$1	1	138	143	15.0000
(((((	chr16:279049-279353(-)$1	1	23	28	15.0000
.))))	chr14:103800511-103800774(+)$1	1	210	215	15.0000
.....	chr2:55460478-55460704(+)$1	1	61	66	15.0000
)))))	chr16:89851067-89851334(-)$1	1	186	191	15.0000

#PSSM
C : 0.96	c : 0.03	
C : 0.96	c : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
G : 0.95	g : 0.04	

#score	915.0000000000001
#seq	61
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_UTR_m1_run1.nuc.txt

#NT
acacacacgcacacacaugcacacaca	chr11:2153180-2153383(-)$1	203	168	195	67.4754
acacacacacacacacacacacacaca	chr14:25279982-25280244(-)$1	262	138	165	67.3934
acacacacacacgccaaugcacacaca	chr13:113773732-113773976(+)$1	244	42	69	54.6885
acacacacgcacacacaugcacacaca	chr11:2153155-2153357(-)$1	202	142	169	67.4754
acacacacgcacacacaugcacacaca	chr11:2153174-2153376(-)$1	202	161	188	67.4754
acacgcaagcacccaccugcacacaca	chr11:2152572-2152776(-)$1	204	77	104	53.7049
acacauacacacacacacacacacaca	chr9:34634700-34634923(-)$1	223	94	121	62.5573
acacacacgcacacacaugcacacaca	chr11:2153117-2153323(-)$1	206	108	135	67.4754
acacgcaagcacccaccugcacacaca	chr11:2152594-2152800(-)$1	206	101	128	53.7049
acacgcaagcacccaccugcacacaca	chr11:2152648-2152857(-)$1	209	158	185	53.7049
acacgcaagcacccaccugcacacaca	chr11:2152672-2152876(-)$1	204	177	204	53.7049
acacacacacacacacacacacacaca	chr5:112213554-112213865(-)$1	311	146	173	67.3934
acacacacgcacacacaugcacacaca	chr11:2153026-2153231(-)$1	205	16	43	67.4754
acacacacacacacacacacacacaca	chr20:44512687-44512926(+)$1	239	57	84	67.3934
acacacacgcacacacaugcacacaca	chr11:2153043-2153250(-)$1	207	35	62	67.4754
acacacacagacacacaugcacauaca	chr17:4618894-4619118(+)$1	224	35	62	59.1147
AAAUGcacacacacacacacacacaca	chr2:37329880-37330195(-)$1	315	22	49	54.9344
acacacacacacacacacacacacaca	chr1:20809172-20809426(-)$1	254	41	68	67.3934
acacacacacacacacacacacacaca	chr11:111609508-111609781(-)$1	273	132	159	67.3934
acacacacacaaacacauacacacaca	chrX:79931661-79931909(-)$1	248	26	53	63.3770
acacacacacacacacacacacacaca	chr17:38296570-38296827(+)$1	257	0	27	67.3934
acacacacacacacacacacacacaca	chr19:58134191-58134463(+)$1	272	135	162	67.3934
acacacacacacacacacacacacaca	chr20:44998476-44998798(-)$1	322	154	181	67.3934
acacacacacacacacacacacacaca	chr12:69051371-69051685(+)$1	314	134	161	67.3934
acacacacacacacacacacacacaca	chr19:51832907-51833223(+)$1	316	174	201	67.3934
acacacacacacacacacacacacaca	chr19:16023337-16023586(-)$1	249	4	31	67.3934
cagcacacgcacacacaugcacacaca	chr11:2152923-2153125(-)$1	202	66	93	54.4426
acacgcaagcacccaccugcacacaca	chr11:2152627-2152834(-)$1	207	135	162	53.7049
acacacacgcacacacaugcacacaca	chr11:2153135-2153341(-)$1	206	126	153	67.4754
acacacacacacacacacacacacaca	chr19:41938681-41938952(-)$1	271	230	257	67.3934
acacgcaagcacccaccugcacacaca	chr11:2152564-2152767(-)$1	203	68	95	53.7049
acacacacgcacacacaugcacacaca	chr11:2153056-2153260(-)$1	204	45	72	67.4754
acacacacacacacacauacacacaca	chrX:65817307-65817550(-)$1	243	40	67	68.1311
acacacacacacacacauacacacaca	chrX:65817368-65817655(-)$1	287	145	172	68.1311
acacacacaaacacacaugcacacaca	chrX:63409169-63409425(-)$1	256	72	99	63.7049
Ucacacacacacacacacgcacacaca	chr3:128532380-128532607(+)$1	227	47	74	63.2131
acacacacucacacacaugcauacacU	chr12:54105497-54105756(-)$1	259	69	96	56.0000
cagcacacgcacacacaugcacacaca	chr11:2152866-2153076(-)$1	210	17	44	54.4426
acacacacacacacacauacacauaca	chr20:18469344-18469637(-)$1	293	23	50	63.4590
acacacacacacacacacacacacaca	chr1:214213031-214213248(+)$1	217	112	139	67.3934
acacacacacacacacacacacacaUA	chr1:206635134-206635370(+)$1	236	111	138	63.0491
acacacacgcacacacaugcacacaca	chr11:2153141-2153347(-)$1	206	132	159	67.4754
acacacacacacacacaugcacacaca	chr20:42178260-42178545(-)$1	285	158	185	68.3770
acacacacgcacacacaugcacacaca	chr11:2153128-2153335(-)$1	207	120	147	67.4754
acacacacacacacacacacacacaca	chr15:60690818-60691080(-)$1	262	46	73	67.3934
cagcacacgcacacacaugcacacaca	chr11:2152952-2153163(-)$1	211	104	131	54.4426
auacacacacauacacauauacacaca	chr12:49976510-49976768(+)$1	258	38	65	54.0327
acacacucacacucacauacacacaca	chr13:30779639-30779904(-)$1	265	118	145	59.2786
acacgcaagcacccaccugcacacaca	chr11:2152527-2152730(-)$1	203	31	58	53.7049
acacacacagacacacacucacacaua	chr9:99578893-99579181(-)$1	288	139	166	56.3278
acacgcaagcacccaccugcacacaca	chr11:2152562-2152764(-)$1	202	65	92	53.7049
acacacacacacacacacacacacaUA	chr1:206635170-206635391(+)$1	221	75	102	63.0491
Ucacacacacacacacacgcacacaca	chr3:128532220-128532471(+)$1	251	207	234	63.2131
acacacacacacacacacacacacaUA	chr1:206635094-206635318(+)$1	224	151	178	63.0491
acacacacacacacacacacacacaca	chr17:4618993-4619228(+)$1	235	0	27	67.3934
acacacacgcacacacaugcacacaca	chr11:2152988-2153192(-)$1	204	21	48	67.4754
acacacacacacacacacacacacaca	chr19:51833074-51833344(+)$1	270	7	34	67.3934
acacgcaagcacccaccugcacacaca	chr11:2152530-2152733(-)$1	203	34	61	53.7049
acacacacacacacacacacacacaca	chr1:20809247-20809538(-)$1	291	153	180	67.3934
acucacacucacacacacucacacaca	chr12:66218051-66218356(+)$1	305	152	179	57.9672

#otherMatches

#Struct PSSM
::::::::cccooooooccc:::::::	chr11:2153031-2153233(-)$1	202	18	45	67.4754
qqqqqqqqbb:::::EEEEE|||||||	chr11:2153180-2153383(-)$1	203	168	195	67.4754
d]ccc::::::::::::::::::::::	chr14:25279982-25280244(-)$1	262	138	165	67.3934
dyyyyyyyyyyyyyyyydddd22bb88	chr13:113773732-113773976(+)$1	244	42	69	54.6885
qqqqqqqqbb:::::EEEEE:::::::	chr11:2153155-2153357(-)$1	202	142	169	67.4754
qqqqqqqqbb:::::::cccppppppp	chr11:2153174-2153376(-)$1	202	161	188	67.4754
::::::::cccooooooccc:::::::	chr11:2152572-2152776(-)$1	204	77	104	53.7049
:::::::::::::::::::::::::::	chr9:34634700-34634923(-)$1	223	94	121	62.5573
::::::::cccooooooccc:::::::	chr11:2153117-2153323(-)$1	206	108	135	67.4754
::::::::cccooooooccc:::::::	chr11:2152594-2152800(-)$1	206	101	128	53.7049
::::::::cccooooooccc:::::::	chr11:2152648-2152857(-)$1	209	158	185	53.7049
mmmmdddd88888888dddd:::::::	chr11:2152672-2152876(-)$1	204	177	204	53.7049
eccc:::::::::::::::::::::::	chr5:112213554-112213865(-)$1	311	146	173	67.3934
::::::::cccooooooccc:::::::	chr11:2153026-2153231(-)$1	205	16	43	67.4754
:::::::::::::::::::::::::::	chr20:44512687-44512926(+)$1	239	57	84	67.3934
::::::::cccooooooccc:::::::	chr11:2153043-2153250(-)$1	207	35	62	67.4754
ff::::::::::::eeeeeooooooee	chr17:4618894-4619118(+)$1	224	35	62	59.1147
::::BB{BB{IIIIIIIIIKKFFFFFF	chr2:37329880-37330195(-)$1	315	22	49	54.9344
:::::::::::::::::::::::::::	chr1:20809172-20809426(-)$1	254	41	68	67.3934
iii]bb:::::::::::::::::::::	chr11:111609508-111609781(-)$1	273	132	159	67.3934
:::::::::::::::::::::::::::	chrX:79931661-79931909(-)$1	248	26	53	63.3770
:::::::::::::::::::::::::::	chr17:38296570-38296827(+)$1	257	0	27	67.3934
eeee:::::::::::::::::::::::	chr19:58134191-58134463(+)$1	272	135	162	67.3934
e::::::::::::::::::::::::::	chr20:44998476-44998798(-)$1	322	154	181	67.3934
::::::::::::::::::::::::::b	chr12:69051371-69051685(+)$1	314	134	161	67.3934
:::::::::::::::::::::::::gg	chr19:51832907-51833223(+)$1	316	174	201	67.3934
::::::::::::::::::::::::::g	chr19:16023337-16023586(-)$1	249	4	31	67.3934
::bbmmmmbb:::::::cccppppppp	chr11:2152923-2153125(-)$1	202	66	93	54.4426
::::::::cccooooooccc:::::::	chr11:2152627-2152834(-)$1	207	135	162	53.7049
::::::::cccooooooccc:::::::	chr11:2153135-2153341(-)$1	206	126	153	67.4754
:::::::::::::::::::::::::::	chr19:41938681-41938952(-)$1	271	230	257	67.3934
::::::::cccooooooccc:::::::	chr11:2152564-2152767(-)$1	203	68	95	53.7049
::::::::cccooooooccc:::::::	chr11:2153056-2153260(-)$1	204	45	72	67.4754
^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:65817307-65817550(-)$1	243	40	67	68.1311
:::::::::::::::::::::::::::	chrX:65817368-65817655(-)$1	287	145	172	68.1311
:::::::::::::::eeeeevvvvvvv	chrX:63409169-63409425(-)$1	256	72	99	63.7049
:::::::::::::CCC{CCC:::::::	chr3:128532380-128532607(+)$1	227	47	74	63.2131
::::ccc!!ffffff"""ccc####ff	chr12:54105497-54105756(-)$1	259	69	96	56.0000
::bbmmmmbb:::::::cccppppppp	chr11:2152866-2153076(-)$1	210	17	44	54.4426
::::::::::::::::::::ffffff!	chr20:18469344-18469637(-)$1	293	23	50	63.4590
:::::::::::::::::::::::::::	chr1:214213031-214213248(+)$1	217	112	139	67.3934
::::::::::::::::::::::iiiii	chr1:206635134-206635370(+)$1	236	111	138	63.0491
::::::::cccooooooccc:::::::	chr11:2153141-2153347(-)$1	206	132	159	67.4754
:::::::::::::::ddddzzzzzzzz	chr20:42178260-42178545(-)$1	285	158	185	68.3770
::::::::cccooooooccc:::::::	chr11:2153128-2153335(-)$1	207	120	147	67.4754
^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:60690818-60691080(-)$1	262	46	73	67.3934
::bbmmmmbb:::::::cccppppppp	chr11:2152952-2153163(-)$1	211	104	131	54.4426
ff+++++++++++eeeeeqqqqqqqqe	chr12:49976510-49976768(+)$1	258	38	65	54.0327
d4444eeeeeEEEEE@@@@@@@@@@@@	chr13:30779639-30779904(-)$1	265	118	145	59.2786
::::::::cccooooooccc:::::::	chr11:2152527-2152730(-)$1	203	31	58	53.7049
:::::::::bbpppppppbb:::::::	chr9:99578893-99579181(-)$1	288	139	166	56.3278
::::::::cccooooooccc:::::::	chr11:2152562-2152764(-)$1	202	65	92	53.7049
^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr1:206635170-206635391(+)$1	221	75	102	63.0491
:::::::::::::::::::::::::::	chr3:128532220-128532471(+)$1	251	207	234	63.2131
::::::::::::::::::::::iiiii	chr1:206635094-206635318(+)$1	224	151	178	63.0491
:::::::::::::::::::::::::DD	chr17:4618993-4619228(+)$1	235	0	27	67.3934
::::::::cccooooooccc:::::::	chr11:2152988-2153192(-)$1	204	21	48	67.4754
DDD::::::::::::::::::::::gg	chr19:51833074-51833344(+)$1	270	7	34	67.3934
::::::::cccooooooccc:::::::	chr11:2152530-2152733(-)$1	203	34	61	53.7049
:::::::::::::::::::::::::::	chr1:20809247-20809538(-)$1	291	153	180	67.3934
:::::::::::::::::::::::::::	chr12:66218051-66218356(+)$1	305	152	179	57.9672

#DB
........(((......))).......	chr11:2153031-2153233(-)$1	1	18	45	67.4754
........)).....))))).......	chr11:2153180-2153383(-)$1	1	168	195	67.4754
).)))......................	chr14:25279982-25280244(-)$1	1	138	165	67.3934
(................))))..))..	chr13:113773732-113773976(+)$1	1	42	69	54.6885
........)).....))))).......	chr11:2153155-2153357(-)$1	1	142	169	67.4754
........)).......(((.......	chr11:2153174-2153376(-)$1	1	161	188	67.4754
........(((......))).......	chr11:2152572-2152776(-)$1	1	77	104	53.7049
...........................	chr9:34634700-34634923(-)$1	1	94	121	62.5573
........(((......))).......	chr11:2153117-2153323(-)$1	1	108	135	67.4754
........(((......))).......	chr11:2152594-2152800(-)$1	1	101	128	53.7049
........(((......))).......	chr11:2152648-2152857(-)$1	1	158	185	53.7049
....))))........)))).......	chr11:2152672-2152876(-)$1	1	177	204	53.7049
)))).......................	chr5:112213554-112213865(-)$1	1	146	173	67.3934
........(((......))).......	chr11:2153026-2153231(-)$1	1	16	43	67.4754
...........................	chr20:44512687-44512926(+)$1	1	57	84	67.3934
........(((......))).......	chr11:2153043-2153250(-)$1	1	35	62	67.4754
))............(((((......))	chr17:4618894-4619118(+)$1	1	35	62	59.1147
....((.((.(((((((((..((((((	chr2:37329880-37330195(-)$1	1	22	49	54.9344
...........................	chr1:20809172-20809426(-)$1	1	41	68	67.3934
))).)).....................	chr11:111609508-111609781(-)$1	1	132	159	67.3934
...........................	chrX:79931661-79931909(-)$1	1	26	53	63.3770
...........................	chr17:38296570-38296827(+)$1	1	0	27	67.3934
)))).......................	chr19:58134191-58134463(+)$1	1	135	162	67.3934
)..........................	chr20:44998476-44998798(-)$1	1	154	181	67.3934
..........................(	chr12:69051371-69051685(+)$1	1	134	161	67.3934
.........................((	chr19:51832907-51833223(+)$1	1	174	201	67.3934
..........................(	chr19:16023337-16023586(-)$1	1	4	31	67.3934
..((....)).......(((.......	chr11:2152923-2153125(-)$1	1	66	93	54.4426
........(((......))).......	chr11:2152627-2152834(-)$1	1	135	162	53.7049
........(((......))).......	chr11:2153135-2153341(-)$1	1	126	153	67.4754
...........................	chr19:41938681-41938952(-)$1	1	230	257	67.3934
........(((......))).......	chr11:2152564-2152767(-)$1	1	68	95	53.7049
........(((......))).......	chr11:2153056-2153260(-)$1	1	45	72	67.4754
...........................	chrX:65817307-65817550(-)$1	1	40	67	68.1311
...........................	chrX:65817368-65817655(-)$1	1	145	172	68.1311
...............(((((.......	chrX:63409169-63409425(-)$1	1	72	99	63.7049
.............(((.(((.......	chr3:128532380-128532607(+)$1	1	47	74	63.2131
....(((..((((((...(((....((	chr12:54105497-54105756(-)$1	1	69	96	56.0000
..((....)).......(((.......	chr11:2152866-2153076(-)$1	1	17	44	54.4426
....................((((((.	chr20:18469344-18469637(-)$1	1	23	50	63.4590
...........................	chr1:214213031-214213248(+)$1	1	112	139	67.3934
......................(((((	chr1:206635134-206635370(+)$1	1	111	138	63.0491
........(((......))).......	chr11:2153141-2153347(-)$1	1	132	159	67.4754
...............((((........	chr20:42178260-42178545(-)$1	1	158	185	68.3770
........(((......))).......	chr11:2153128-2153335(-)$1	1	120	147	67.4754
...........................	chr15:60690818-60691080(-)$1	1	46	73	67.3934
..((....)).......(((.......	chr11:2152952-2153163(-)$1	1	104	131	54.4426
((...........(((((........)	chr12:49976510-49976768(+)$1	1	38	65	54.0327
)....))))))))))............	chr13:30779639-30779904(-)$1	1	118	145	59.2786
........(((......))).......	chr11:2152527-2152730(-)$1	1	31	58	53.7049
.........((.......)).......	chr9:99578893-99579181(-)$1	1	139	166	56.3278
........(((......))).......	chr11:2152562-2152764(-)$1	1	65	92	53.7049
.........................))	chr1:206635170-206635391(+)$1	1	75	102	63.0491
...........................	chr3:128532220-128532471(+)$1	1	207	234	63.2131
......................(((((	chr1:206635094-206635318(+)$1	1	151	178	63.0491
.........................((	chr17:4618993-4619228(+)$1	1	0	27	67.3934
........(((......))).......	chr11:2152988-2153192(-)$1	1	21	48	67.4754
(((......................((	chr19:51833074-51833344(+)$1	1	7	34	67.3934
........(((......))).......	chr11:2152530-2152733(-)$1	1	34	61	53.7049
...........................	chr1:20809247-20809538(-)$1	1	153	180	67.3934
...........................	chr12:66218051-66218356(+)$1	1	152	179	57.9672

#PSSM
a : 0.90	c : 0.04	U : 0.03	A : 0.01	
c : 0.91	a : 0.04	A : 0.01	u : 0.01	
a : 0.91	g : 0.04	A : 0.01	u : 0.01	
c : 0.98	U : 0.01	
a : 0.83	g : 0.14	G : 0.01	
c : 0.98	u : 0.01	
a : 0.98	u : 0.01	
c : 0.85	a : 0.14	
a : 0.57	g : 0.39	u : 0.03	
c : 0.95	g : 0.03	a : 0.01	
a : 1.00	
c : 0.96	a : 0.01	u : 0.01	
a : 0.81	c : 0.14	g : 0.01	u : 0.01	
c : 1.00	
a : 0.98	c : 0.01	
c : 0.98	a : 0.01	
a : 0.85	c : 0.14	
u : 0.57	c : 0.42	
g : 0.50	a : 0.45	u : 0.03	
c : 0.98	u : 0.01	
a : 1.00	
c : 0.98	u : 0.01	
a : 1.00	
c : 0.96	u : 0.03	
a : 1.00	
c : 0.93	U : 0.04	u : 0.01	
a : 0.93	A : 0.04	U : 0.01	

#score	3827.7213114754118
#seq	61
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_transcript_m1_run2.nuc.txt

#NT
UGUG	chr2:203157689-203157959(+)$1	270	61	65	11.9999
UGUG	chr12:9253668-9253891(-)$1	223	135	139	11.9999
UGUG	chr2:216286840-216287061(-)$1	221	193	197	11.9999
UGUG	chr17:16343220-16343441(+)$1	221	114	118	11.9999
UGUG	chr2:216296524-216296743(-)$1	219	139	143	11.9999
UGUG	chr1:45242078-45242285(+)$1	207	118	122	11.9999
UGUG	chr14:21860207-21860415(-)$1	208	7	11	11.9999
UGUG	chr15:25296526-25296820(+)$1	294	59	63	11.9999
UGUG	chr13:27829147-27829352(+)$1	205	10	14	11.9999
UGUG	chr6:133138349-133138555(+)$1	206	37	41	11.9999
UGUG	chr3:48642380-48642631(-)$1	251	67	71	11.9999
UGUG	chr1:155889598-155889807(-)$1	209	3	7	11.9999
UGUG	chr4:74280673-74280901(+)$1	228	19	23	11.9999
UGUG	chr14:103804081-103804321(+)$1	240	115	119	11.9999
UGUG	chr5:85916259-85916486(+)$1	227	68	72	11.9999
UGUG	chr11:62621050-62621260(-)$1	210	53	57	11.9999
UGUG	chr3:39449881-39450085(+)$1	204	63	67	11.9999
UGUG	chr4:1976344-1976557(+)$1	213	65	69	11.9999
UGUG	chr3:186504444-186504650(+)$1	206	37	41	11.9999
UGUG	chr12:9251956-9252205(-)$1	249	76	80	11.9999
UGUG	chr2:216251534-216251750(-)$1	216	124	128	11.9999
UGUG	chr12:7076413-7076627(-)$1	214	155	159	11.9999
UGUG	chr12:7076427-7076634(-)$1	207	162	166	11.9999
UGUG	chr4:74277722-74277929(+)$1	207	105	109	11.9999
UGUG	chr17:74554825-74555032(+)$1	207	95	99	11.9999
UGUG	chr14:45580030-45580264(+)$1	234	53	57	11.9999
UGUG	chr2:203157677-203157889(+)$1	212	73	77	11.9999
ugug	chr7:98479311-98479515(+)$1	204	53	57	11.9999
UGUG	chr18:51748611-51748813(-)$1	202	29	33	11.9999
UGUG	chr11:46783848-46784054(-)$1	206	5	9	11.9999
UGUG	chr11:122928732-122928956(-)$1	224	0	4	11.9999
UGUG	chr2:216296515-216296724(-)$1	209	120	124	11.9999
UGUG	chr2:216230127-216230341(-)$1	214	7	11	11.9999
UGUG	chr16:2015107-2015334(+)$1	227	172	176	11.9999
UGUG	chr2:129050362-129050650(-)$1	288	38	42	11.9999
UGUG	chr2:216229576-216229807(-)$1	231	84	88	11.9999
UGUG	chr1:116941175-116941446(+)$1	271	81	85	11.9999
UGUG	chr1:76255078-76255297(+)$1	219	126	130	11.9999
UGUG	chr17:27047506-27047720(+)$1	214	97	101	11.9999
UGUG	chr3:160232704-160232911(-)$1	207	2	6	11.9999
UGUG	chr1:45242085-45242300(+)$1	215	111	115	11.9999
UGUG	chr2:234184521-234184725(+)$1	204	2	6	11.9999
UGUG	chr17:27050390-27050606(+)$1	216	6	10	11.9999
UGUG	chr14:103804124-103804338(+)$1	214	72	76	11.9999
UGUG	chr11:17096099-17096308(-)$1	209	122	126	11.9999
UGUG	chr12:9254015-9254284(-)$1	269	97	101	11.9999
UGUG	chr13:27829113-27829319(+)$1	206	44	48	11.9999
UGUG	chr1:173834686-173834910(-)$1	224	52	56	11.9999
UGUG	chr3:186502523-186502733(+)$1	210	167	171	11.9999
UGUG	chr2:232320432-232320642(-)$1	210	120	124	11.9999
UGUG	chr1:173835006-173835265(-)$1	259	200	204	11.9999
ugug	chr11:122929949-122930154(-)$1	205	28	32	11.9999
ugug	chr8:33370954-33371160(+)$1	206	83	87	11.9999
UGUG	chr2:234184408-234184612(+)$1	204	70	74	11.9999
UGUG	chr3:133473238-133473448(+)$1	210	87	91	11.9999
UGUG	chr2:207026912-207027116(+)$1	204	80	84	11.9999
UGUG	chr22:39711139-39711348(-)$1	209	1	5	11.9999
UGUG	chr2:234197456-234197684(+)$1	228	8	12	11.9999
UGUG	chr2:207026907-207027112(+)$1	205	85	89	11.9999
UGUG	chr2:216251317-216251535(-)$1	218	56	60	11.9999
UGUG	chr14:21865412-21865624(-)$1	212	175	179	11.9999
UGUG	chr12:6619408-6619625(+)$1	217	3	7	11.9999
UGUG	chr11:46783874-46784090(-)$1	216	41	45	11.9999
UGUG	chr2:234197429-234197642(+)$1	213	35	39	11.9999
UGUG	chr12:6619524-6619742(+)$1	218	65	69	11.9999
UGUG	chr11:62621992-62622208(-)$1	216	3	7	11.9999
UGUG	chr1:173835678-173835883(-)$1	205	28	32	11.9999
UGUG	chr17:74554774-74555009(+)$1	235	146	150	11.9999
UGUG	chr15:66793502-66793733(-)$1	231	128	132	11.9999
ugug	chr5:179132596-179132863(+)$1	267	76	80	11.9999
UGUG	chr7:56122994-56123263(+)$1	269	15	19	11.9999
UGUG	chr9:136216191-136216397(+)$1	206	55	59	11.9999
UGUG	chr13:45911554-45911760(-)$1	206	112	116	11.9999
UGUG	chr13:45911620-45911838(-)$1	218	32	36	11.9999
UGUG	chr15:25227038-25227282(+)$1	244	184	188	11.9999
UGUG	chr1:40032983-40033188(-)$1	205	47	51	11.9999
UGUG	chr15:25321024-25321270(+)$1	246	44	48	11.9999
UGUG	chr2:216283985-216284198(-)$1	213	151	155	11.9999
UGUG	chr1:28906197-28906410(-)$1	213	113	117	11.9999
UGUG	chr9:33934222-33934447(-)$1	225	121	125	11.9999
UGUG	chr16:2204941-2205173(-)$1	232	71	75	11.9999
UGUG	chr3:52725345-52725562(+)$1	217	43	47	11.9999
UGUG	chr16:2205002-2205207(-)$1	205	105	109	11.9999
UGUG	chr17:16344483-16344686(+)$1	203	98	102	11.9999
UGUG	chr22:39711148-39711364(-)$1	216	17	21	11.9999
UGUG	chr13:27829152-27829359(+)$1	207	5	9	11.9999

#otherMatches

#Struct PSSM
dd[b	chr17:75085339-75085567(+)$1	228	69	73	11.9999
::::	chr2:203157689-203157959(+)$1	270	61	65	11.9999
flll	chr12:9253668-9253891(-)$1	223	135	139	11.9999
CCC}	chr2:216286840-216287061(-)$1	221	193	197	11.9999
cfff	chr17:16343220-16343441(+)$1	221	114	118	11.9999
ddd4	chr2:216296524-216296743(-)$1	219	139	143	11.9999
[eee	chr1:45242078-45242285(+)$1	207	118	122	11.9999
G:::	chr14:21860207-21860415(-)$1	208	7	11	11.9999
ccc!	chr15:25296526-25296820(+)$1	294	59	63	11.9999
MMMM	chr13:27829147-27829352(+)$1	205	10	14	11.9999
na]b	chr6:133138349-133138555(+)$1	206	37	41	11.9999
ffcc	chr3:48642380-48642631(-)$1	251	67	71	11.9999
CC{E	chr1:155889598-155889807(-)$1	209	3	7	11.9999
GGGG	chr4:74280673-74280901(+)$1	228	19	23	11.9999
dddd	chr14:103804081-103804321(+)$1	240	115	119	11.9999
dddd	chr5:85916259-85916486(+)$1	227	68	72	11.9999
HHHH	chr11:62621050-62621260(-)$1	210	53	57	11.9999
gggg	chr3:39449881-39450085(+)$1	204	63	67	11.9999
2fff	chr4:1976344-1976557(+)$1	213	65	69	11.9999
c[ee	chr3:186504444-186504650(+)$1	206	37	41	11.9999
bb[d	chr12:9251956-9252205(-)$1	249	76	80	11.9999
::::	chr2:216251534-216251750(-)$1	216	124	128	11.9999
"""c	chr12:7076413-7076627(-)$1	214	155	159	11.9999
GG}G	chr12:7076427-7076634(-)$1	207	162	166	11.9999
EEEE	chr4:74277722-74277929(+)$1	207	105	109	11.9999
c22b	chr17:74554825-74555032(+)$1	207	95	99	11.9999
dHHH	chr14:45580030-45580264(+)$1	234	53	57	11.9999
dddd	chr2:203157677-203157889(+)$1	212	73	77	11.9999
====	chr7:98479311-98479515(+)$1	204	53	57	11.9999
a[a[	chr18:51748611-51748813(-)$1	202	29	33	11.9999
GGGG	chr11:46783848-46784054(-)$1	206	5	9	11.9999
::JJ	chr11:122928732-122928956(-)$1	224	0	4	11.9999
ddd4	chr2:216296515-216296724(-)$1	209	120	124	11.9999
FFFF	chr2:216230127-216230341(-)$1	214	7	11	11.9999
qddd	chr16:2015107-2015334(+)$1	227	172	176	11.9999
{BBF	chr2:129050362-129050650(-)$1	288	38	42	11.9999
cccm	chr2:216229576-216229807(-)$1	231	84	88	11.9999
EEEE	chr1:116941175-116941446(+)$1	271	81	85	11.9999
====	chr1:76255078-76255297(+)$1	219	126	130	11.9999
mmma	chr17:27047506-27047720(+)$1	214	97	101	11.9999
:::g	chr3:160232704-160232911(-)$1	207	2	6	11.9999
[eee	chr1:45242085-45242300(+)$1	215	111	115	11.9999
FFFF	chr2:234184521-234184725(+)$1	204	2	6	11.9999
FF{C	chr17:27050390-27050606(+)$1	216	6	10	11.9999
dddd	chr14:103804124-103804338(+)$1	214	72	76	11.9999
:===	chr11:17096099-17096308(-)$1	209	122	126	11.9999
dggg	chr12:9254015-9254284(-)$1	269	97	101	11.9999
5ccc	chr13:27829113-27829319(+)$1	206	44	48	11.9999
!eee	chr1:173834686-173834910(-)$1	224	52	56	11.9999
EEEY	chr3:186502523-186502733(+)$1	210	167	171	11.9999
EEYY	chr2:232320432-232320642(-)$1	210	120	124	11.9999
DDDD	chr1:173835006-173835265(-)$1	259	200	204	11.9999
GKKC	chr11:122929949-122930154(-)$1	205	28	32	11.9999
====	chr8:33370954-33371160(+)$1	206	83	87	11.9999
eeee	chr2:234184408-234184612(+)$1	204	70	74	11.9999
fff[	chr3:133473238-133473448(+)$1	210	87	91	11.9999
iiic	chr2:207026912-207027116(+)$1	204	80	84	11.9999
::::	chr22:39711139-39711348(-)$1	209	1	5	11.9999
:::d	chr2:234197456-234197684(+)$1	228	8	12	11.9999
iiic	chr2:207026907-207027112(+)$1	205	85	89	11.9999
CCCC	chr2:216251317-216251535(-)$1	218	56	60	11.9999
III~	chr14:21865412-21865624(-)$1	212	175	179	11.9999
D{BB	chr12:6619408-6619625(+)$1	217	3	7	11.9999
GGGG	chr11:46783874-46784090(-)$1	216	41	45	11.9999
3eee	chr2:234197429-234197642(+)$1	213	35	39	11.9999
b]==	chr12:6619524-6619742(+)$1	218	65	69	11.9999
EE{G	chr11:62621992-62622208(-)$1	216	3	7	11.9999
MEEE	chr1:173835678-173835883(-)$1	205	28	32	11.9999
c22b	chr17:74554774-74555009(+)$1	235	146	150	11.9999
eee:	chr15:66793502-66793733(-)$1	231	128	132	11.9999
gg33	chr5:179132596-179132863(+)$1	267	76	80	11.9999
LDDD	chr7:56122994-56123263(+)$1	269	15	19	11.9999
[eee	chr9:136216191-136216397(+)$1	206	55	59	11.9999
nnne	chr13:45911554-45911760(-)$1	206	112	116	11.9999
ffff	chr13:45911620-45911838(-)$1	218	32	36	11.9999
ddnn	chr15:25227038-25227282(+)$1	244	184	188	11.9999
]ggg	chr1:40032983-40033188(-)$1	205	47	51	11.9999
dddg	chr15:25321024-25321270(+)$1	246	44	48	11.9999
cc]b	chr2:216283985-216284198(-)$1	213	151	155	11.9999
h]==	chr1:28906197-28906410(-)$1	213	113	117	11.9999
#ggg	chr9:33934222-33934447(-)$1	225	121	125	11.9999
ff::	chr16:2204941-2205173(-)$1	232	71	75	11.9999
nfff	chr3:52725345-52725562(+)$1	217	43	47	11.9999
F{BB	chr16:2205002-2205207(-)$1	205	105	109	11.9999
c]bb	chr17:16344483-16344686(+)$1	203	98	102	11.9999
hhh:	chr22:39711148-39711364(-)$1	216	17	21	11.9999
MMMM	chr13:27829152-27829359(+)$1	207	5	9	11.9999

#DB
((.(	chr17:75085339-75085567(+)$1	1	69	73	11.9999
....	chr2:203157689-203157959(+)$1	1	61	65	11.9999
(...	chr12:9253668-9253891(-)$1	1	135	139	11.9999
))).	chr2:216286840-216287061(-)$1	1	193	197	11.9999
)(((	chr17:16343220-16343441(+)$1	1	114	118	11.9999
))).	chr2:216296524-216296743(-)$1	1	139	143	11.9999
.(((	chr1:45242078-45242285(+)$1	1	118	122	11.9999
(...	chr14:21860207-21860415(-)$1	1	7	11	11.9999
(((.	chr15:25296526-25296820(+)$1	1	59	63	11.9999
....	chr13:27829147-27829352(+)$1	1	10	14	11.9999
.).)	chr6:133138349-133138555(+)$1	1	37	41	11.9999
))))	chr3:48642380-48642631(-)$1	1	67	71	11.9999
((.(	chr1:155889598-155889807(-)$1	1	3	7	11.9999
((((	chr4:74280673-74280901(+)$1	1	19	23	11.9999
((((	chr14:103804081-103804321(+)$1	1	115	119	11.9999
((((	chr5:85916259-85916486(+)$1	1	68	72	11.9999
((((	chr11:62621050-62621260(-)$1	1	53	57	11.9999
))))	chr3:39449881-39450085(+)$1	1	63	67	11.9999
.)))	chr4:1976344-1976557(+)$1	1	65	69	11.9999
(.((	chr3:186504444-186504650(+)$1	1	37	41	11.9999
((.(	chr12:9251956-9252205(-)$1	1	76	80	11.9999
....	chr2:216251534-216251750(-)$1	1	124	128	11.9999
...(	chr12:7076413-7076627(-)$1	1	155	159	11.9999
)).)	chr12:7076427-7076634(-)$1	1	162	166	11.9999
((((	chr4:74277722-74277929(+)$1	1	105	109	11.9999
)..)	chr17:74554825-74555032(+)$1	1	95	99	11.9999
)(((	chr14:45580030-45580264(+)$1	1	53	57	11.9999
))))	chr2:203157677-203157889(+)$1	1	73	77	11.9999
((((	chr7:98479311-98479515(+)$1	1	53	57	11.9999
(.(.	chr18:51748611-51748813(-)$1	1	29	33	11.9999
((((	chr11:46783848-46784054(-)$1	1	5	9	11.9999
..((	chr11:122928732-122928956(-)$1	1	0	4	11.9999
))).	chr2:216296515-216296724(-)$1	1	120	124	11.9999
((((	chr2:216230127-216230341(-)$1	1	7	11	11.9999
.)))	chr16:2015107-2015334(+)$1	1	172	176	11.9999
.(((	chr2:129050362-129050650(-)$1	1	38	42	11.9999
(((.	chr2:216229576-216229807(-)$1	1	84	88	11.9999
))))	chr1:116941175-116941446(+)$1	1	81	85	11.9999
))))	chr1:76255078-76255297(+)$1	1	126	130	11.9999
...)	chr17:27047506-27047720(+)$1	1	97	101	11.9999
...(	chr3:160232704-160232911(-)$1	1	2	6	11.9999
.(((	chr1:45242085-45242300(+)$1	1	111	115	11.9999
((((	chr2:234184521-234184725(+)$1	1	2	6	11.9999
((.(	chr17:27050390-27050606(+)$1	1	6	10	11.9999
((((	chr14:103804124-103804338(+)$1	1	72	76	11.9999
.(((	chr11:17096099-17096308(-)$1	1	122	126	11.9999
))))	chr12:9254015-9254284(-)$1	1	97	101	11.9999
.)))	chr13:27829113-27829319(+)$1	1	44	48	11.9999
.(((	chr1:173834686-173834910(-)$1	1	52	56	11.9999
))).	chr3:186502523-186502733(+)$1	1	167	171	11.9999
))..	chr2:232320432-232320642(-)$1	1	120	124	11.9999
))))	chr1:173835006-173835265(-)$1	1	200	204	11.9999
(..(	chr11:122929949-122930154(-)$1	1	28	32	11.9999
))))	chr8:33370954-33371160(+)$1	1	83	87	11.9999
))))	chr2:234184408-234184612(+)$1	1	70	74	11.9999
(((.	chr3:133473238-133473448(+)$1	1	87	91	11.9999
))))	chr2:207026912-207027116(+)$1	1	80	84	11.9999
....	chr22:39711139-39711348(-)$1	1	1	5	11.9999
...(	chr2:234197456-234197684(+)$1	1	8	12	11.9999
))))	chr2:207026907-207027112(+)$1	1	85	89	11.9999
((((	chr2:216251317-216251535(-)$1	1	56	60	11.9999
))).	chr14:21865412-21865624(-)$1	1	175	179	11.9999
(.((	chr12:6619408-6619625(+)$1	1	3	7	11.9999
((((	chr11:46783874-46784090(-)$1	1	41	45	11.9999
.)))	chr2:234197429-234197642(+)$1	1	35	39	11.9999
).))	chr12:6619524-6619742(+)$1	1	65	69	11.9999
((.(	chr11:62621992-62622208(-)$1	1	3	7	11.9999
.(((	chr1:173835678-173835883(-)$1	1	28	32	11.9999
)..)	chr17:74554774-74555009(+)$1	1	146	150	11.9999
))).	chr15:66793502-66793733(-)$1	1	128	132	11.9999
))..	chr5:179132596-179132863(+)$1	1	76	80	11.9999
.(((	chr7:56122994-56123263(+)$1	1	15	19	11.9999
.(((	chr9:136216191-136216397(+)$1	1	55	59	11.9999
...)	chr13:45911554-45911760(-)$1	1	112	116	11.9999
((((	chr13:45911620-45911838(-)$1	1	32	36	11.9999
((..	chr15:25227038-25227282(+)$1	1	184	188	11.9999
.)))	chr1:40032983-40033188(-)$1	1	47	51	11.9999
))))	chr15:25321024-25321270(+)$1	1	44	48	11.9999
)).)	chr2:216283985-216284198(-)$1	1	151	155	11.9999
).))	chr1:28906197-28906410(-)$1	1	113	117	11.9999
.(((	chr9:33934222-33934447(-)$1	1	121	125	11.9999
))..	chr16:2204941-2205173(-)$1	1	71	75	11.9999
.)))	chr3:52725345-52725562(+)$1	1	43	47	11.9999
(.((	chr16:2205002-2205207(-)$1	1	105	109	11.9999
).))	chr17:16344483-16344686(+)$1	1	98	102	11.9999
))).	chr22:39711148-39711364(-)$1	1	17	21	11.9999
....	chr13:27829152-27829359(+)$1	1	5	9	11.9999

#PSSM
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	

#score	1043.9999999999998
#seq	87
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_UTR_m2_run1.nuc.txt

#NT
AGCUGGG	chr2:97534075-97534308(-)$1	233	12	19	13.6829
ggcuggg	chr6:7107966-7108225(+)$1	259	112	119	17.5853
GGCUGGG	chr19:13250242-13250501(+)$1	259	45	52	17.5853
GACUGGG	chr17:8076657-8076872(-)$1	215	172	179	13.9268
AGCUGGG	chr12:123997923-123998181(-)$1	258	98	105	13.6829
GCCUGGG	chr2:97525789-97526033(-)$1	244	63	70	14.1707
GACUGGG	chr19:54971699-54971951(+)$1	252	50	57	13.9268
GGCAGGG	chr22:19710374-19710612(+)$1	238	121	128	13.4390
GGCUGGG	chr7:150069982-150070222(+)$1	240	84	91	17.5853
GGGUGGG	chr20:1165127-1165384(-)$1	257	18	25	13.5609
GACUGGG	chr17:8076672-8076904(-)$1	232	204	211	13.9268
GGCUGGG	chr5:138629498-138629745(+)$1	247	30	37	17.5853
GGCUGGG	chr8:101962963-101963244(-)$1	281	141	148	17.5853
GGCUGGG	chr19:18547567-18547863(-)$1	296	175	182	17.5853
GGCGGGG	chr19:59056282-59056528(+)$1	246	157	164	13.5609
GGCUGUG	chr19:2425991-2426267(-)$1	276	19	26	12.9512
GGAUGGG	chr19:1881804-1882101(-)$1	297	172	179	13.6829
GGCUGGG	chr3:186648354-186648607(+)$1	253	136	143	17.5853
GGAUGGG	chr19:2425550-2425840(-)$1	290	152	159	13.6829
GGAUGGG	chr19:1416432-1416664(+)$1	232	35	42	13.6829
GGCUGGG	chr22:21983344-21983575(-)$1	231	25	32	17.5853
GGCGGGG	chr17:80231340-80231633(-)$1	293	129	136	13.5609
GGUUGGG	chr19:2270204-2270528(+)$1	324	16	23	13.4390
GCCUGGG	chr16:89367059-89367310(-)$1	251	109	116	14.1707
GGCUGCG	chr15:70389958-70390288(-)$1	330	260	267	12.9512
GCCUGGG	chrX:152954103-152954376(+)$1	273	41	48	14.1707
GCCUGGG	chr19:52729134-52729495(+)$1	361	253	260	14.1707
GGGUGGG	chr22:19710763-19711020(+)$1	257	117	124	13.5609
GGCUGGG	chr6:167369854-167370160(-)$1	306	116	123	17.5853
ggcuggg	chr22:20068093-20068356(+)$1	263	0	7	17.5853
GGCGGGG	chr22:20004105-20004395(-)$1	290	10	17	13.5609
UGCUGGG	chr12:123997699-123998012(-)$1	313	9	16	13.3170
AGCUGGG	chr22:50016658-50016910(-)$1	252	137	144	13.6829
GGCUGGG	chr7:5569465-5569798(-)$1	333	121	128	17.5853
GCCUGGG	chrX:153589595-153589864(-)$1	269	49	56	14.1707
GGCUGGG	chr2:200323096-200323381(-)$1	285	84	91	17.5853
GGCUGGG	chr3:184079460-184079790(+)$1	330	60	67	17.5853
AGCUGGG	chr3:128211744-128211964(+)$1	220	47	54	13.6829
ggcaggg	chr6:86352567-86352820(-)$1	253	35	42	13.4390
GGCUGGU	chr22:50018397-50018654(-)$1	257	38	45	12.9512

#otherMatches

#Struct PSSM
eeeeeoo	chr11:290512-290764(+)$1	252	98	105	12.9512
mmcccff	chr2:97534075-97534308(-)$1	233	12	19	13.6829
mabb]bb	chr6:7107966-7108225(+)$1	259	112	119	17.5853
F{EEEEE	chr19:13250242-13250501(+)$1	259	45	52	17.5853
b22bbee	chr17:8076657-8076872(-)$1	215	172	179	13.9268
$$$$$bb	chr12:123997923-123998181(-)$1	258	98	105	13.6829
ffeeeee	chr2:97525789-97526033(-)$1	244	63	70	14.1707
d"""eee	chr19:54971699-54971951(+)$1	252	50	57	13.9268
cc]dddd	chr22:19710374-19710612(+)$1	238	121	128	13.4390
hhhhhhh	chr7:150069982-150070222(+)$1	240	84	91	17.5853
{CCCeee	chr20:1165127-1165384(-)$1	257	18	25	13.5609
b22bbee	chr17:8076672-8076904(-)$1	232	204	211	13.9268
[ccc"""	chr5:138629498-138629745(+)$1	247	30	37	17.5853
fffff]b	chr8:101962963-101963244(-)$1	281	141	148	17.5853
gggg444	chr19:18547567-18547863(-)$1	296	175	182	17.5853
dddeeee	chr19:59056282-59056528(+)$1	246	157	164	13.5609
dd[gggg	chr19:2425991-2426267(-)$1	276	19	26	12.9512
dd[bbqq	chr19:1881804-1882101(-)$1	297	172	179	13.6829
~JJJJJJ	chr3:186648354-186648607(+)$1	253	136	143	17.5853
d]a]ccc	chr19:2425550-2425840(-)$1	290	152	159	13.6829
gg"""ff	chr19:1416432-1416664(+)$1	232	35	42	13.6829
ddggggg	chr22:21983344-21983575(-)$1	231	25	32	17.5853
HHHHHHH	chr17:80231340-80231633(-)$1	293	129	136	13.5609
QQQEEEE	chr19:2270204-2270528(+)$1	324	16	23	13.4390
hhhhhhc	chr16:89367059-89367310(-)$1	251	109	116	14.1707
dddd333	chr15:70389958-70390288(-)$1	330	260	267	12.9512
ggggg::	chrX:152954103-152954376(+)$1	273	41	48	14.1707
eeeeddd	chr19:52729134-52729495(+)$1	361	253	260	14.1707
eeeeeee	chr22:19710763-19711020(+)$1	257	117	124	13.5609
{FFFFFF	chr6:167369854-167370160(-)$1	306	116	123	17.5853
CCC:ddd	chr22:20068093-20068356(+)$1	263	0	7	17.5853
[ccc[cc	chr22:20004105-20004395(-)$1	290	10	17	13.5609
[ffffff	chr12:123997699-123998012(-)$1	313	9	16	13.3170
C{DDDDe	chr22:50016658-50016910(-)$1	252	137	144	13.6829
ooooodd	chr7:5569465-5569798(-)$1	333	121	128	17.5853
eeeeeff	chrX:153589595-153589864(-)$1	269	49	56	14.1707
2eeeeeG	chr2:200323096-200323381(-)$1	285	84	91	17.5853
bb]dddd	chr3:184079460-184079790(+)$1	330	60	67	17.5853
"ccc###	chr3:128211744-128211964(+)$1	220	47	54	13.6829
CCCLLLH	chr6:86352567-86352820(-)$1	253	35	42	13.4390
ddd[bb[	chr22:50018397-50018654(-)$1	257	38	45	12.9512

#DB
(((((..	chr11:290512-290764(+)$1	1	98	105	12.9512
..)))))	chr2:97534075-97534308(-)$1	1	12	19	13.6829
.))).))	chr6:7107966-7108225(+)$1	1	112	119	17.5853
(.(((((	chr19:13250242-13250501(+)$1	1	45	52	17.5853
)..))))	chr17:8076657-8076872(-)$1	1	172	179	13.9268
.....((	chr12:123997923-123998181(-)$1	1	98	105	13.6829
))(((((	chr2:97525789-97526033(-)$1	1	63	70	14.1707
(...(((	chr19:54971699-54971951(+)$1	1	50	57	13.9268
)).))))	chr22:19710374-19710612(+)$1	1	121	128	13.4390
)))))))	chr7:150069982-150070222(+)$1	1	84	91	17.5853
.((((((	chr20:1165127-1165384(-)$1	1	18	25	13.5609
)..))))	chr17:8076672-8076904(-)$1	1	204	211	13.9268
.(((...	chr5:138629498-138629745(+)$1	1	30	37	17.5853
))))).)	chr8:101962963-101963244(-)$1	1	141	148	17.5853
))))...	chr19:18547567-18547863(-)$1	1	175	182	17.5853
)))))))	chr19:59056282-59056528(+)$1	1	157	164	13.5609
((.((((	chr19:2425991-2426267(-)$1	1	19	26	12.9512
((.((..	chr19:1881804-1882101(-)$1	1	172	179	13.6829
.))))))	chr3:186648354-186648607(+)$1	1	136	143	17.5853
).).)))	chr19:2425550-2425840(-)$1	1	152	159	13.6829
((...((	chr19:1416432-1416664(+)$1	1	35	42	13.6829
))(((((	chr22:21983344-21983575(-)$1	1	25	32	17.5853
)))))))	chr17:80231340-80231633(-)$1	1	129	136	13.5609
...((((	chr19:2270204-2270528(+)$1	1	16	23	13.4390
(((((((	chr16:89367059-89367310(-)$1	1	109	116	14.1707
))))...	chr15:70389958-70390288(-)$1	1	260	267	12.9512
)))))..	chrX:152954103-152954376(+)$1	1	41	48	14.1707
(((((((	chr19:52729134-52729495(+)$1	1	253	260	14.1707
)))))))	chr22:19710763-19711020(+)$1	1	117	124	13.5609
.((((((	chr6:167369854-167370160(-)$1	1	116	123	17.5853
(((.(((	chr22:20068093-20068356(+)$1	1	0	7	17.5853
.(((.((	chr22:20004105-20004395(-)$1	1	10	17	13.5609
.((((((	chr12:123997699-123998012(-)$1	1	9	16	13.3170
(.(((((	chr22:50016658-50016910(-)$1	1	137	144	13.6829
.....))	chr7:5569465-5569798(-)$1	1	121	128	17.5853
)))))))	chrX:153589595-153589864(-)$1	1	49	56	14.1707
.)))))(	chr2:200323096-200323381(-)$1	1	84	91	17.5853
)).))))	chr3:184079460-184079790(+)$1	1	60	67	17.5853
.(((...	chr3:128211744-128211964(+)$1	1	47	54	13.6829
(((...(	chr6:86352567-86352820(-)$1	1	35	42	13.4390
(((.((.	chr22:50018397-50018654(-)$1	1	38	45	12.9512

#PSSM
G : 0.80	A : 0.09	g : 0.07	U : 0.02	
G : 0.73	C : 0.12	g : 0.07	A : 0.07	
C : 0.78	c : 0.07	A : 0.07	G : 0.04	U : 0.02	
U : 0.82	G : 0.07	u : 0.04	A : 0.02	a : 0.02	
G : 0.92	g : 0.07	
G : 0.87	g : 0.07	U : 0.02	C : 0.02	
G : 0.87	g : 0.07	A : 0.02	U : 0.02	

#score	610.2682926829273
#seq	41
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_transcript_m1_run1.nuc.txt

#NT
gaa	chr2:168740639-168740934(-)$1	295	2	5	9.0000
GAA	chr18:1365947-1366186(-)$1	239	17	20	9.0000
gaa	chr5:145868574-145868867(+)$1	293	8	11	9.0000
GAA	chr8:41599886-41600149(-)$1	263	34	37	9.0000
GAA	chr11:65269359-65269561(+)$1	202	63	66	9.0000
GAA	chr11:62293173-62293427(-)$1	254	64	67	9.0000
gaa	chr4:129996959-129997215(-)$1	256	27	30	9.0000
gaa	chr22:48041317-48041560(+)$1	243	45	48	9.0000
GAA	chr6:167405882-167406136(-)$1	254	31	34	9.0000
GAA	chr7:119427459-119427710(-)$1	251	34	37	9.0000
GAA	chr3:37366585-37366878(+)$1	293	14	17	9.0000
GAA	chr8:58118240-58118527(+)$1	287	4	7	9.0000
GAA	chr8:91276058-91276319(+)$1	261	32	35	9.0000
GAA	chr8:91282815-91283062(+)$1	247	16	19	9.0000
GAA	chr1:214815838-214816099(+)$1	261	37	40	9.0000
gaa	chr4:174253073-174253289(-)$1	216	11	14	9.0000
gaa	chr7:119346414-119346678(-)$1	264	20	23	9.0000
gaa	chr2:168739414-168739679(-)$1	265	10	13	9.0000
gaa	chr6:10939777-10940076(+)$1	299	50	53	9.0000
gaa	chr7:158567982-158568251(-)$1	269	0	3	9.0000
gaa	chr18:2735391-2735655(+)$1	264	26	29	9.0000
GAA	chr18:75688637-75688884(-)$1	247	4	7	9.0000
gaa	chr2:168739713-168739999(-)$1	286	16	19	9.0000
GAA	chr11:65266502-65266709(+)$1	207	69	72	9.0000
gaa	chr7:120887860-120888140(+)$1	280	39	42	9.0000
gaa	chr17:41466305-41466566(-)$1	261	52	55	9.0000
GAA	chr8:97243073-97243372(-)$1	299	12	15	9.0000
GAA	chr11:65266729-65266958(+)$1	229	10	13	9.0000
GAA	chr4:761263-761517(-)$1	254	1	4	9.0000
GAA	chr22:50021845-50022112(-)$1	267	23	26	9.0000
GAA	chr11:65268518-65268739(+)$1	221	66	69	9.0000
gaa	chr7:120887553-120887889(+)$1	336	89	92	9.0000
gaa	chr7:119432952-119433211(-)$1	259	36	39	9.0000
gaa	chr7:119435462-119435724(-)$1	262	17	20	9.0000
GAA	chr7:120898849-120899074(+)$1	225	11	14	9.0000
gaa	chr5:39006072-39006365(-)$1	293	3	6	9.0000
GAA	chr3:47165799-47166032(-)$1	233	3	6	9.0000
gaa	chr16:47332924-47333223(-)$1	299	122	125	9.0000
GAA	chr6:166791273-166791555(-)$1	282	15	18	9.0000
GAA	chr11:65267937-65268140(+)$1	203	5	8	9.0000
GAA	chr8:91284798-91285055(+)$1	257	10	13	9.0000
gaa	chr8:91267204-91267450(+)$1	246	34	37	9.0000
GAA	chr2:168741284-168741564(-)$1	280	137	140	9.0000
gaa	chr8:91274806-91275047(+)$1	241	14	17	9.0000
gaa	chr14:102267297-102267566(+)$1	269	84	87	9.0000
gaa	chr7:119435205-119435508(-)$1	303	21	24	9.0000
gaa	chr7:120797285-120797598(+)$1	313	22	25	9.0000
GAA	chr22:48192241-48192505(+)$1	264	153	156	9.0000
gaa	chr17:20788575-20788824(+)$1	249	55	58	9.0000
GAA	chr8:91283087-91283339(+)$1	252	9	12	9.0000
GAA	chr11:65268143-65268349(+)$1	206	76	79	9.0000
GAA	chr11:62300887-62301156(-)$1	269	194	197	9.0000
GAA	chr22:49963728-49963986(-)$1	258	123	126	9.0000
GAA	chr1:167746075-167746365(+)$1	290	4	7	9.0000
GAA	chr12:46320559-46320862(-)$1	303	5	8	9.0000
gaa	chr7:119431005-119431257(-)$1	252	55	58	9.0000
gaa	chr22:48162717-48162992(+)$1	275	75	78	9.0000
gaa	chr7:119524337-119524600(-)$1	263	4	7	9.0000
gaa	chr1:225125524-225125863(+)$1	339	42	45	9.0000
gaa	chr8:91266402-91266646(+)$1	244	51	54	9.0000
GAA	chr17:56408720-56408980(-)$1	260	0	3	9.0000
GAA	chr7:119429565-119429824(-)$1	259	11	14	9.0000
GAA	chr11:65267629-65267838(+)$1	209	45	48	9.0000
GAA	chr11:65269435-65269642(+)$1	207	2	5	9.0000
GAA	chr11:65268679-65268885(+)$1	206	78	81	9.0000
GAA	chr7:8083912-8084176(+)$1	264	14	17	9.0000
gaa	chr7:102542019-102542325(-)$1	306	55	58	9.0000
gaa	chr7:105899226-105899551(-)$1	325	21	24	9.0000
GAA	chr11:65268131-65268338(+)$1	207	88	91	9.0000
GAA	chr11:65269156-65269363(+)$1	207	4	7	9.0000
gaa	chr1:41636066-41636372(-)$1	306	3	6	9.0000
GAA	chr11:65270430-65270637(+)$1	207	21	24	9.0000
gaa	chr8:91265841-91266085(+)$1	244	23	26	9.0000
gaa	chr8:91268267-91268510(+)$1	243	3	6	9.0000
GAA	chr11:65270535-65270745(+)$1	210	73	76	9.0000
gaa	chr16:20687803-20688047(+)$1	244	44	47	9.0000
gaa	chr18:1365707-1365972(-)$1	265	41	44	9.0000
GAA	chr18:75689264-75689594(-)$1	330	178	181	9.0000
GAA	chr9:134082247-134082505(+)$1	258	36	39	9.0000
GAA	chr4:104079676-104079954(-)$1	278	28	31	9.0000
GAA	chr15:20626277-20626518(-)$1	241	23	26	9.0000
GAA	chr18:9256905-9257166(+)$1	261	74	77	9.0000
GAA	chr16:20693536-20693802(+)$1	266	55	58	9.0000
gaa	chr21:39470651-39470933(-)$1	282	15	18	9.0000
GAA	chr22:50034937-50035178(-)$1	241	15	18	9.0000
gaa	chr11:65267429-65267647(+)$1	218	25	28	9.0000
gaa	chr3:6616010-6616265(+)$1	255	17	20	9.0000
gaa	chr8:91265500-91265804(+)$1	304	1	4	9.0000
GAA	chr16:1366239-1366543(+)$1	304	31	34	9.0000
gaa	chr1:41634973-41635254(-)$1	281	95	98	9.0000
gaa	chr3:6616065-6616324(+)$1	259	8	11	9.0000
GAA	chr2:178232198-178232474(-)$1	276	67	70	9.0000
GAA	chr3:160141303-160141538(+)$1	235	87	90	9.0000
GAA	chr11:65268076-65268280(+)$1	204	1	4	9.0000
GAA	chr11:62286369-62286605(-)$1	236	62	65	9.0000
GAA	chr11:65267599-65267812(+)$1	213	1	4	9.0000
gaa	chr2:168747998-168748270(-)$1	272	37	40	9.0000
gaa	chr7:119344792-119345158(-)$1	366	47	50	9.0000
GAA	chr5:53629435-53629692(+)$1	257	10	13	9.0000

#otherMatches

#Struct PSSM
:::	chr1:212228435-212228724(+)$1	289	27	30	9.0000
:::	chr2:168740639-168740934(-)$1	295	2	5	9.0000
dd:	chr18:1365947-1366186(-)$1	239	17	20	9.0000
::D	chr5:145868574-145868867(+)$1	293	8	11	9.0000
hhh	chr8:41599886-41600149(-)$1	263	34	37	9.0000
bbd	chr11:65269359-65269561(+)$1	202	63	66	9.0000
fpp	chr11:62293173-62293427(-)$1	254	64	67	9.0000
===	chr4:129996959-129997215(-)$1	256	27	30	9.0000
ggg	chr22:48041317-48041560(+)$1	243	45	48	9.0000
ppp	chr6:167405882-167406136(-)$1	254	31	34	9.0000
ccc	chr7:119427459-119427710(-)$1	251	34	37	9.0000
bb[	chr3:37366585-37366878(+)$1	293	14	17	9.0000
nnn	chr8:58118240-58118527(+)$1	287	4	7	9.0000
hhh	chr8:91276058-91276319(+)$1	261	32	35	9.0000
DDD	chr8:91282815-91283062(+)$1	247	16	19	9.0000
:::	chr1:214815838-214816099(+)$1	261	37	40	9.0000
:::	chr4:174253073-174253289(-)$1	216	11	14	9.0000
:::	chr7:119346414-119346678(-)$1	264	20	23	9.0000
f!!	chr2:168739414-168739679(-)$1	265	10	13	9.0000
sss	chr6:10939777-10940076(+)$1	299	50	53	9.0000
:::	chr7:158567982-158568251(-)$1	269	0	3	9.0000
eee	chr18:2735391-2735655(+)$1	264	26	29	9.0000
::J	chr18:75688637-75688884(-)$1	247	4	7	9.0000
sss	chr2:168739713-168739999(-)$1	286	16	19	9.0000
333	chr11:65266502-65266709(+)$1	207	69	72	9.0000
DDD	chr7:120887860-120888140(+)$1	280	39	42	9.0000
dd!	chr17:41466305-41466566(-)$1	261	52	55	9.0000
eem	chr8:97243073-97243372(-)$1	299	12	15	9.0000
===	chr11:65266729-65266958(+)$1	229	10	13	9.0000
GGG	chr4:761263-761517(-)$1	254	1	4	9.0000
b!!	chr22:50021845-50022112(-)$1	267	23	26	9.0000
fff	chr11:65268518-65268739(+)$1	221	66	69	9.0000
nnn	chr7:120887553-120887889(+)$1	336	89	92	9.0000
fff	chr7:119432952-119433211(-)$1	259	36	39	9.0000
d!!	chr7:119435462-119435724(-)$1	262	17	20	9.0000
:::	chr7:120898849-120899074(+)$1	225	11	14	9.0000
FFF	chr5:39006072-39006365(-)$1	293	3	6	9.0000
DDD	chr3:47165799-47166032(-)$1	233	3	6	9.0000
cc2	chr16:47332924-47333223(-)$1	299	122	125	9.0000
eec	chr6:166791273-166791555(-)$1	282	15	18	9.0000
:HH	chr11:65267937-65268140(+)$1	203	5	8	9.0000
::I	chr8:91284798-91285055(+)$1	257	10	13	9.0000
MMM	chr8:91267204-91267450(+)$1	246	34	37	9.0000
fff	chr2:168741284-168741564(-)$1	280	137	140	9.0000
GGG	chr8:91274806-91275047(+)$1	241	14	17	9.0000
77f	chr14:102267297-102267566(+)$1	269	84	87	9.0000
ff[	chr7:119435205-119435508(-)$1	303	21	24	9.0000
ggg	chr7:120797285-120797598(+)$1	313	22	25	9.0000
b::	chr22:48192241-48192505(+)$1	264	153	156	9.0000
bbF	chr17:20788575-20788824(+)$1	249	55	58	9.0000
FFF	chr8:91283087-91283339(+)$1	252	9	12	9.0000
nnn	chr11:65268143-65268349(+)$1	206	76	79	9.0000
ff:	chr11:62300887-62301156(-)$1	269	194	197	9.0000
a33	chr22:49963728-49963986(-)$1	258	123	126	9.0000
:::	chr1:167746075-167746365(+)$1	290	4	7	9.0000
::f	chr12:46320559-46320862(-)$1	303	5	8	9.0000
CC{	chr7:119431005-119431257(-)$1	252	55	58	9.0000
a]f	chr22:48162717-48162992(+)$1	275	75	78	9.0000
{AK	chr7:119524337-119524600(-)$1	263	4	7	9.0000
ee:	chr1:225125524-225125863(+)$1	339	42	45	9.0000
mmm	chr8:91266402-91266646(+)$1	244	51	54	9.0000
:::	chr17:56408720-56408980(-)$1	260	0	3	9.0000
d[g	chr7:119429565-119429824(-)$1	259	11	14	9.0000
cii	chr11:65267629-65267838(+)$1	209	45	48	9.0000
GGG	chr11:65269435-65269642(+)$1	207	2	5	9.0000
$$$	chr11:65268679-65268885(+)$1	206	78	81	9.0000
:::	chr7:8083912-8084176(+)$1	264	14	17	9.0000
==(	chr7:102542019-102542325(-)$1	306	55	58	9.0000
FLL	chr7:105899226-105899551(-)$1	325	21	24	9.0000
nnn	chr11:65268131-65268338(+)$1	207	88	91	9.0000
:::	chr11:65269156-65269363(+)$1	207	4	7	9.0000
:::	chr1:41636066-41636372(-)$1	306	3	6	9.0000
g::	chr11:65270430-65270637(+)$1	207	21	24	9.0000
!!d	chr8:91265841-91266085(+)$1	244	23	26	9.0000
DDD	chr8:91268267-91268510(+)$1	243	3	6	9.0000
fff	chr11:65270535-65270745(+)$1	210	73	76	9.0000
GG{	chr16:20687803-20688047(+)$1	244	44	47	9.0000
ccc	chr18:1365707-1365972(-)$1	265	41	44	9.0000
NNN	chr18:75689264-75689594(-)$1	330	178	181	9.0000
ddd	chr9:134082247-134082505(+)$1	258	36	39	9.0000
cbb	chr4:104079676-104079954(-)$1	278	28	31	9.0000
nnn	chr15:20626277-20626518(-)$1	241	23	26	9.0000
:EE	chr18:9256905-9257166(+)$1	261	74	77	9.0000
MMM	chr16:20693536-20693802(+)$1	266	55	58	9.0000
BB:	chr21:39470651-39470933(-)$1	282	15	18	9.0000
:::	chr22:50034937-50035178(-)$1	241	15	18	9.0000
:::	chr11:65267429-65267647(+)$1	218	25	28	9.0000
c""	chr3:6616010-6616265(+)$1	255	17	20	9.0000
:::	chr8:91265500-91265804(+)$1	304	1	4	9.0000
:::	chr16:1366239-1366543(+)$1	304	31	34	9.0000
eee	chr1:41634973-41635254(-)$1	281	95	98	9.0000
i##	chr3:6616065-6616324(+)$1	259	8	11	9.0000
HH:	chr2:178232198-178232474(-)$1	276	67	70	9.0000
:::	chr3:160141303-160141538(+)$1	235	87	90	9.0000
:::	chr11:65268076-65268280(+)$1	204	1	4	9.0000
ooo	chr11:62286369-62286605(-)$1	236	62	65	9.0000
:::	chr11:65267599-65267812(+)$1	213	1	4	9.0000
d::	chr2:168747998-168748270(-)$1	272	37	40	9.0000
ccc	chr7:119344792-119345158(-)$1	366	47	50	9.0000
:::	chr5:53629435-53629692(+)$1	257	10	13	9.0000

#DB
...	chr1:212228435-212228724(+)$1	1	27	30	9.0000
...	chr2:168740639-168740934(-)$1	1	2	5	9.0000
)).	chr18:1365947-1366186(-)$1	1	17	20	9.0000
..(	chr5:145868574-145868867(+)$1	1	8	11	9.0000
)))	chr8:41599886-41600149(-)$1	1	34	37	9.0000
))(	chr11:65269359-65269561(+)$1	1	63	66	9.0000
(..	chr11:62293173-62293427(-)$1	1	64	67	9.0000
(((	chr4:129996959-129997215(-)$1	1	27	30	9.0000
(((	chr22:48041317-48041560(+)$1	1	45	48	9.0000
...	chr6:167405882-167406136(-)$1	1	31	34	9.0000
(((	chr7:119427459-119427710(-)$1	1	34	37	9.0000
((.	chr3:37366585-37366878(+)$1	1	14	17	9.0000
...	chr8:58118240-58118527(+)$1	1	4	7	9.0000
(((	chr8:91276058-91276319(+)$1	1	32	35	9.0000
(((	chr8:91282815-91283062(+)$1	1	16	19	9.0000
...	chr1:214815838-214816099(+)$1	1	37	40	9.0000
...	chr4:174253073-174253289(-)$1	1	11	14	9.0000
...	chr7:119346414-119346678(-)$1	1	20	23	9.0000
(..	chr2:168739414-168739679(-)$1	1	10	13	9.0000
...	chr6:10939777-10940076(+)$1	1	50	53	9.0000
...	chr7:158567982-158568251(-)$1	1	0	3	9.0000
)))	chr18:2735391-2735655(+)$1	1	26	29	9.0000
..(	chr18:75688637-75688884(-)$1	1	4	7	9.0000
...	chr2:168739713-168739999(-)$1	1	16	19	9.0000
...	chr11:65266502-65266709(+)$1	1	69	72	9.0000
(((	chr7:120887860-120888140(+)$1	1	39	42	9.0000
((.	chr17:41466305-41466566(-)$1	1	52	55	9.0000
((.	chr8:97243073-97243372(-)$1	1	12	15	9.0000
(((	chr11:65266729-65266958(+)$1	1	10	13	9.0000
(((	chr4:761263-761517(-)$1	1	1	4	9.0000
(..	chr22:50021845-50022112(-)$1	1	23	26	9.0000
)))	chr11:65268518-65268739(+)$1	1	66	69	9.0000
...	chr7:120887553-120887889(+)$1	1	89	92	9.0000
(((	chr7:119432952-119433211(-)$1	1	36	39	9.0000
(..	chr7:119435462-119435724(-)$1	1	17	20	9.0000
...	chr7:120898849-120899074(+)$1	1	11	14	9.0000
(((	chr5:39006072-39006365(-)$1	1	3	6	9.0000
(((	chr3:47165799-47166032(-)$1	1	3	6	9.0000
)).	chr16:47332924-47333223(-)$1	1	122	125	9.0000
(((	chr6:166791273-166791555(-)$1	1	15	18	9.0000
.((	chr11:65267937-65268140(+)$1	1	5	8	9.0000
..(	chr8:91284798-91285055(+)$1	1	10	13	9.0000
...	chr8:91267204-91267450(+)$1	1	34	37	9.0000
)))	chr2:168741284-168741564(-)$1	1	137	140	9.0000
(((	chr8:91274806-91275047(+)$1	1	14	17	9.0000
..)	chr14:102267297-102267566(+)$1	1	84	87	9.0000
((.	chr7:119435205-119435508(-)$1	1	21	24	9.0000
)))	chr7:120797285-120797598(+)$1	1	22	25	9.0000
)..	chr22:48192241-48192505(+)$1	1	153	156	9.0000
))(	chr17:20788575-20788824(+)$1	1	55	58	9.0000
(((	chr8:91283087-91283339(+)$1	1	9	12	9.0000
...	chr11:65268143-65268349(+)$1	1	76	79	9.0000
)).	chr11:62300887-62301156(-)$1	1	194	197	9.0000
)..	chr22:49963728-49963986(-)$1	1	123	126	9.0000
...	chr1:167746075-167746365(+)$1	1	4	7	9.0000
..(	chr12:46320559-46320862(-)$1	1	5	8	9.0000
((.	chr7:119431005-119431257(-)$1	1	55	58	9.0000
).)	chr22:48162717-48162992(+)$1	1	75	78	9.0000
.(.	chr7:119524337-119524600(-)$1	1	4	7	9.0000
)).	chr1:225125524-225125863(+)$1	1	42	45	9.0000
...	chr8:91266402-91266646(+)$1	1	51	54	9.0000
...	chr17:56408720-56408980(-)$1	1	0	3	9.0000
(.(	chr7:119429565-119429824(-)$1	1	11	14	9.0000
)((	chr11:65267629-65267838(+)$1	1	45	48	9.0000
(((	chr11:65269435-65269642(+)$1	1	2	5	9.0000
...	chr11:65268679-65268885(+)$1	1	78	81	9.0000
...	chr7:8083912-8084176(+)$1	1	14	17	9.0000
((.	chr7:102542019-102542325(-)$1	1	55	58	9.0000
(..	chr7:105899226-105899551(-)$1	1	21	24	9.0000
...	chr11:65268131-65268338(+)$1	1	88	91	9.0000
...	chr11:65269156-65269363(+)$1	1	4	7	9.0000
...	chr1:41636066-41636372(-)$1	1	3	6	9.0000
)..	chr11:65270430-65270637(+)$1	1	21	24	9.0000
..(	chr8:91265841-91266085(+)$1	1	23	26	9.0000
(((	chr8:91268267-91268510(+)$1	1	3	6	9.0000
)))	chr11:65270535-65270745(+)$1	1	73	76	9.0000
((.	chr16:20687803-20688047(+)$1	1	44	47	9.0000
(((	chr18:1365707-1365972(-)$1	1	41	44	9.0000
...	chr18:75689264-75689594(-)$1	1	178	181	9.0000
)))	chr9:134082247-134082505(+)$1	1	36	39	9.0000
(((	chr4:104079676-104079954(-)$1	1	28	31	9.0000
...	chr15:20626277-20626518(-)$1	1	23	26	9.0000
.((	chr18:9256905-9257166(+)$1	1	74	77	9.0000
...	chr16:20693536-20693802(+)$1	1	55	58	9.0000
((.	chr21:39470651-39470933(-)$1	1	15	18	9.0000
...	chr22:50034937-50035178(-)$1	1	15	18	9.0000
...	chr11:65267429-65267647(+)$1	1	25	28	9.0000
(..	chr3:6616010-6616265(+)$1	1	17	20	9.0000
...	chr8:91265500-91265804(+)$1	1	1	4	9.0000
...	chr16:1366239-1366543(+)$1	1	31	34	9.0000
)))	chr1:41634973-41635254(-)$1	1	95	98	9.0000
(..	chr3:6616065-6616324(+)$1	1	8	11	9.0000
((.	chr2:178232198-178232474(-)$1	1	67	70	9.0000
...	chr3:160141303-160141538(+)$1	1	87	90	9.0000
...	chr11:65268076-65268280(+)$1	1	1	4	9.0000
...	chr11:62286369-62286605(-)$1	1	62	65	9.0000
...	chr11:65267599-65267812(+)$1	1	1	4	9.0000
)..	chr2:168747998-168748270(-)$1	1	37	40	9.0000
)))	chr7:119344792-119345158(-)$1	1	47	50	9.0000
...	chr5:53629435-53629692(+)$1	1	10	13	9.0000

#PSSM
G : 0.55	g : 0.45	
A : 0.55	a : 0.45	
A : 0.55	a : 0.45	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_CDS_m1_run2.nuc.txt

#NT
aggaggag	chr4:174253129-174253341(-)$1	212	49	57	20.5000
AGGAGGAA	chr6:33382417-33382715(+)$1	298	29	37	15.8333
AGGAGGAG	chr17:80018479-80018759(-)$1	280	98	106	20.5000
GGGAGGAG	chr7:99096214-99096473(-)$1	259	48	56	16.4166
CGGAGGAG	chr6:43738508-43738788(+)$1	280	126	134	16.4166
AGGGGGAG	chr19:42402520-42402795(+)$1	275	87	95	15.8333
UGGAGGAG	chr8:26151076-26151372(+)$1	296	109	117	16.6666
aggagggg	chr1:90493100-90493318(+)$1	218	30	38	16.0833
AGGAGGUG	chr3:14520511-14520797(+)$1	286	79	87	16.1666
AGGAGGAG	chr7:100280845-100281093(-)$1	248	114	122	20.5000
AGGAGGAG	chr22:19443099-19443395(-)$1	296	222	230	20.5000
AGGAGGAG	chr3:10346686-10346940(-)$1	254	102	110	20.5000
ACGAGGAG	chrX:106367380-106367627(-)$1	247	119	127	16.0833
AGGAGGAG	chr10:15210401-15210725(-)$1	324	199	207	20.5000
AAGAGGAG	chr15:63958102-63958408(-)$1	306	137	145	16.1666
AGGAGGAG	chr11:93517727-93518064(+)$1	337	118	126	20.5000
AGCAGGAG	chr10:103553585-103553873(-)$1	288	188	196	16.0000
aGGAGGAG	chr2:232325279-232325482(-)$1	203	76	84	20.5000
AGGAUGAG	chr5:71492057-71492313(+)$1	256	42	50	16.2500
ACGAGGAG	chr8:145161185-145161458(+)$1	273	145	153	16.0833
gggaggag	chr1:109825173-109825454(-)$1	281	182	190	16.4166
aggaggag	chr19:54621545-54621913(+)$1	368	219	227	20.5000
UGGAGGAG	chr22:50874764-50875028(+)$1	264	70	78	16.6666
AGGCGGAG	chr19:2247527-2247764(+)$1	237	87	95	15.9166
UGGAGGAG	chr5:65440183-65440468(+)$1	285	246	254	16.6666
AGGAAGAG	chr1:52343988-52344275(-)$1	287	247	255	16.3333
AGGCGGAG	chr11:377060-377321(+)$1	261	206	214	15.9166
AGAAGGAG	chr5:891650-891887(-)$1	237	89	97	16.2500
AGGAGGAG	chr11:61913065-61913317(+)$1	252	39	47	20.5000
AGGAGAAG	chr20:61914071-61914346(+)$1	275	139	147	16.1666
AGGAGGAG	chrX:54011374-54011726(-)$1	352	308	316	20.5000
AGGAGGAU	chr18:2656092-2656363(+)$1	271	31	39	15.8333
AGAAGGAG	chr19:50167886-50168189(-)$1	303	2	10	16.2500
aggaggag	chr4:174253153-174253369(-)$1	216	77	85	20.5000
AGGAGGAC	chr6:31726226-31726474(+)$1	248	7	15	15.8333
AGGAGGUG	chr11:61644856-61645119(-)$1	263	181	189	16.1666
AGGAGGGG	chrX:48837727-48837974(-)$1	247	16	24	16.0833
aggagaag	chr9:131456197-131456418(+)$1	221	0	8	16.1666
aggaggag	chr17:4575405-4575627(-)$1	222	7	15	20.5000
AGGAGGUG	chr2:86697330-86697630(+)$1	300	196	204	16.1666
AGGAUGAG	chr10:126480182-126480515(-)$1	333	246	254	16.2500
AGGAGGAG	chr1:229477910-229478279(-)$1	369	335	343	20.5000
CGGAGGAG	chr7:142961960-142962309(+)$1	349	26	34	16.4166
UGGAGGAG	chr22:29694619-29694868(+)$1	249	155	163	16.6666
UGGAGGAG	chr7:128434455-128434748(+)$1	293	102	110	16.6666
AGGACGAG	chr4:1347005-1347319(+)$1	314	109	117	16.2500
AGAAGGAG	chr10:70520769-70521040(+)$1	271	109	117	16.2500
aagaggag	chr2:27606716-27606942(-)$1	226	116	124	16.1666
aGGAGGAG	chr2:232325335-232325610(-)$1	275	204	212	20.5000
AGGAGAAG	chr1:226050406-226050656(-)$1	250	179	187	16.1666
AGGAGCAG	chr1:245027494-245027755(-)$1	261	59	67	16.0000
AGGAGGAG	chr14:23790733-23790994(+)$1	261	234	242	20.5000
AGGAGUAG	chr1:156532830-156533097(-)$1	267	175	183	16.0000
AGGAAGAG	chr20:62337597-62337864(-)$1	267	127	135	16.3333
AGGAAGAG	chr7:100482305-100482548(+)$1	243	113	121	16.3333
AGAAGGAG	chr10:70520840-70521050(+)$1	210	38	46	16.2500
AGGACGAG	chr19:1012426-1012674(-)$1	248	111	119	16.2500
AAGAGGAG	chr5:138700157-138700481(+)$1	324	99	107	16.1666
AGGAGGAG	chr16:22337134-22337433(+)$1	299	91	99	20.5000

#otherMatches

#Struct PSSM
HHH{DDDD	chrX:64737798-64738078(-)$1	280	23	31	20.5000
rbb:::::	chr4:174253129-174253341(-)$1	212	49	57	20.5000
[bb[bb!!	chr6:33382417-33382715(+)$1	298	29	37	15.8333
===:cccm	chr17:80018479-80018759(-)$1	280	98	106	20.5000
GGGG}A::	chr7:99096214-99096473(-)$1	259	48	56	16.4166
DMMMMA{B	chr6:43738508-43738788(+)$1	280	126	134	16.4166
:DDDDBBL	chr19:42402520-42402795(+)$1	275	87	95	15.8333
========	chr8:26151076-26151372(+)$1	296	109	117	16.6666
[eeeee""	chr1:90493100-90493318(+)$1	218	30	38	16.0833
ddeeeeem	chr3:14520511-14520797(+)$1	286	79	87	16.1666
pppppppb	chr7:100280845-100281093(-)$1	248	114	122	20.5000
[bb!!ddd	chr22:19443099-19443395(-)$1	296	222	230	20.5000
diiiiiii	chr3:10346686-10346940(-)$1	254	102	110	20.5000
cchhhhhh	chrX:106367380-106367627(-)$1	247	119	127	16.0833
::::DDDD	chr10:15210401-15210725(-)$1	324	199	207	20.5000
!!a[a!!d	chr15:63958102-63958408(-)$1	306	137	145	16.1666
nnnndddd	chr11:93517727-93518064(+)$1	337	118	126	20.5000
33dddd33	chr10:103553585-103553873(-)$1	288	188	196	16.0000
!a!!a!!a	chr2:232325279-232325482(-)$1	203	76	84	20.5000
KDDDD:::	chr5:71492057-71492313(+)$1	256	42	50	16.2500
EEE:DDDD	chr8:145161185-145161458(+)$1	273	145	153	16.0833
=!!bb!!c	chr1:109825173-109825454(-)$1	281	182	190	16.4166
]bb:::::	chr19:54621545-54621913(+)$1	368	219	227	20.5000
]bb]dddd	chr22:50874764-50875028(+)$1	264	70	78	16.6666
FFFFFF}B	chr19:2247527-2247764(+)$1	237	87	95	15.9166
ccqqqqqq	chr5:65440183-65440468(+)$1	285	246	254	16.6666
CCC}DDDD	chr1:52343988-52344275(-)$1	287	247	255	16.3333
eeccc!!f	chr11:377060-377321(+)$1	261	206	214	15.9166
ccc[aooo	chr5:891650-891887(-)$1	237	89	97	16.2500
ssssssss	chr11:61913065-61913317(+)$1	252	39	47	20.5000
Dddddlll	chr20:61914071-61914346(+)$1	275	139	147	16.1666
HHHHHYYI	chrX:54011374-54011726(-)$1	352	308	316	20.5000
[bb!!ddd	chr18:2656092-2656363(+)$1	271	31	39	15.8333
::::::HH	chr19:50167886-50168189(-)$1	303	2	10	16.2500
rbb:::::	chr4:174253153-174253369(-)$1	216	77	85	20.5000
:IIIIIII	chr6:31726226-31726474(+)$1	248	7	15	15.8333
||FFFFFF	chr11:61644856-61645119(-)$1	263	181	189	16.1666
:BB{IIII	chrX:48837727-48837974(-)$1	247	16	24	16.0833
::::::::	chr9:131456197-131456418(+)$1	221	0	8	16.1666
::::::::	chr17:4575405-4575627(-)$1	222	7	15	20.5000
ccc]====	chr2:86697330-86697630(+)$1	300	196	204	16.1666
YHHHHHHH	chr10:126480182-126480515(-)$1	333	246	254	16.2500
nnnnbb]a	chr1:229477910-229478279(-)$1	369	335	343	20.5000
HHH{CCCB	chr7:142961960-142962309(+)$1	349	26	34	16.4166
33bb]ddd	chr22:29694619-29694868(+)$1	249	155	163	16.6666
cc####hh	chr7:128434455-128434748(+)$1	293	102	110	16.6666
RRA{EEEE	chr4:1347005-1347319(+)$1	314	109	117	16.2500
ZZZGGGGG	chr10:70520769-70521040(+)$1	271	109	117	16.2500
:::::GGG	chr2:27606716-27606942(-)$1	226	116	124	16.1666
dddd''''	chr2:232325335-232325610(-)$1	275	204	212	20.5000
EEE}DDDD	chr1:226050406-226050656(-)$1	250	179	187	16.1666
LLBBLLLE	chr1:245027494-245027755(-)$1	261	59	67	16.0000
vvvvvvvv	chr14:23790733-23790994(+)$1	261	234	242	20.5000
cccbb[hh	chr1:156532830-156533097(-)$1	267	175	183	16.0000
dccc[a[d	chr20:62337597-62337864(-)$1	267	127	135	16.3333
::::::::	chr7:100482305-100482548(+)$1	243	113	121	16.3333
::::::::	chr10:70520840-70521050(+)$1	210	38	46	16.2500
ggggg]bb	chr19:1012426-1012674(-)$1	248	111	119	16.2500
ssssccc]	chr5:138700157-138700481(+)$1	324	99	107	16.1666
VEEEEEGG	chr16:22337134-22337433(+)$1	299	91	99	20.5000

#DB
(((.((((	chrX:64737798-64738078(-)$1	1	23	31	20.5000
.)).....	chr4:174253129-174253341(-)$1	1	49	57	20.5000
.((.((..	chr6:33382417-33382715(+)$1	1	29	37	15.8333
))).(((.	chr17:80018479-80018759(-)$1	1	98	106	20.5000
)))).)..	chr7:99096214-99096473(-)$1	1	48	56	16.4166
(....(.(	chr6:43738508-43738788(+)$1	1	126	134	16.4166
.((((((.	chr19:42402520-42402795(+)$1	1	87	95	15.8333
))))))))	chr8:26151076-26151372(+)$1	1	109	117	16.6666
.(((((..	chr1:90493100-90493318(+)$1	1	30	38	16.0833
))(((((.	chr3:14520511-14520797(+)$1	1	79	87	16.1666
.......)	chr7:100280845-100281093(-)$1	1	114	122	20.5000
.((..(((	chr22:19443099-19443395(-)$1	1	222	230	20.5000
))))))))	chr3:10346686-10346940(-)$1	1	102	110	20.5000
((((((((	chrX:106367380-106367627(-)$1	1	119	127	16.0833
....))))	chr10:15210401-15210725(-)$1	1	199	207	20.5000
..(.(..(	chr15:63958102-63958408(-)$1	1	137	145	16.1666
....))))	chr11:93517727-93518064(+)$1	1	118	126	20.5000
..))))..	chr10:103553585-103553873(-)$1	1	188	196	16.0000
.(..(..(	chr2:232325279-232325482(-)$1	1	76	84	20.5000
.((((...	chr5:71492057-71492313(+)$1	1	42	50	16.2500
))).((((	chr8:145161185-145161458(+)$1	1	145	153	16.0833
(..((..(	chr1:109825173-109825454(-)$1	1	182	190	16.4166
.)).....	chr19:54621545-54621913(+)$1	1	219	227	20.5000
.)).))))	chr22:50874764-50875028(+)$1	1	70	78	16.6666
)))))).)	chr19:2247527-2247764(+)$1	1	87	95	15.9166
((......	chr5:65440183-65440468(+)$1	1	246	254	16.6666
))).))))	chr1:52343988-52344275(-)$1	1	247	255	16.3333
))(((..(	chr11:377060-377321(+)$1	1	206	214	15.9166
(((.(...	chr5:891650-891887(-)$1	1	89	97	16.2500
........	chr11:61913065-61913317(+)$1	1	39	47	20.5000
(((((...	chr20:61914071-61914346(+)$1	1	139	147	16.1666
)))))..)	chrX:54011374-54011726(-)$1	1	308	316	20.5000
.((..(((	chr18:2656092-2656363(+)$1	1	31	39	15.8333
......((	chr19:50167886-50168189(-)$1	1	2	10	16.2500
.)).....	chr4:174253153-174253369(-)$1	1	77	85	20.5000
.(((((((	chr6:31726226-31726474(+)$1	1	7	15	15.8333
..))))))	chr11:61644856-61645119(-)$1	1	181	189	16.1666
.((.((((	chrX:48837727-48837974(-)$1	1	16	24	16.0833
........	chr9:131456197-131456418(+)$1	1	0	8	16.1666
........	chr17:4575405-4575627(-)$1	1	7	15	20.5000
))).))))	chr2:86697330-86697630(+)$1	1	196	204	16.1666
.)))))))	chr10:126480182-126480515(-)$1	1	246	254	16.2500
....)).)	chr1:229477910-229478279(-)$1	1	335	343	20.5000
(((.((((	chr7:142961960-142962309(+)$1	1	26	34	16.4166
..)).)))	chr22:29694619-29694868(+)$1	1	155	163	16.6666
((....((	chr7:128434455-128434748(+)$1	1	102	110	16.6666
..(.((((	chr4:1347005-1347319(+)$1	1	109	117	16.2500
...)))))	chr10:70520769-70521040(+)$1	1	109	117	16.2500
.....(((	chr2:27606716-27606942(-)$1	1	116	124	16.1666
((((....	chr2:232325335-232325610(-)$1	1	204	212	20.5000
))).))))	chr1:226050406-226050656(-)$1	1	179	187	16.1666
..((...(	chr1:245027494-245027755(-)$1	1	59	67	16.0000
........	chr14:23790733-23790994(+)$1	1	234	242	20.5000
(((((.((	chr1:156532830-156533097(-)$1	1	175	183	16.0000
((((.(.(	chr20:62337597-62337864(-)$1	1	127	135	16.3333
........	chr7:100482305-100482548(+)$1	1	113	121	16.3333
........	chr10:70520840-70521050(+)$1	1	38	46	16.2500
))))).))	chr19:1012426-1012674(-)$1	1	111	119	16.2500
....))).	chr5:138700157-138700481(+)$1	1	99	107	16.1666
.(((((((	chr16:22337134-22337433(+)$1	1	91	99	20.5000

#PSSM
A : 0.68	a : 0.16	U : 0.08	C : 0.03	G : 0.01	g : 0.01	
G : 0.78	g : 0.13	C : 0.03	A : 0.03	a : 0.01	
G : 0.76	g : 0.15	A : 0.06	C : 0.01	
A : 0.80	a : 0.15	C : 0.03	G : 0.01	
G : 0.73	g : 0.15	A : 0.05	U : 0.03	C : 0.03	
G : 0.78	g : 0.13	A : 0.03	a : 0.01	C : 0.01	U : 0.01	
A : 0.78	a : 0.13	U : 0.05	g : 0.01	G : 0.01	
G : 0.80	g : 0.15	A : 0.01	U : 0.01	C : 0.01	

#score	1050.0000000000002
#seq	60
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_transcript_m2_run2.nuc.txt

#NT
CCAGCCCAGC	chr19:13063891-13064208(+)$1	317	186	196	12.4509
CCAGGCCCAC	chr19:42880259-42880577(+)$1	318	55	65	13.4313
CCUGCCCCUC	chr5:139625355-139625627(-)$1	272	94	104	15.4901
ccagcuacug	chr22:36884599-36884874(-)$1	275	111	121	13.0392
CCACCCCCUU	chr11:71808683-71808966(-)$1	283	149	159	13.6274
CGAGCCCCUG	chr19:11033053-11033320(+)$1	267	70	80	16.3725
CAAGCCCCUG	chr19:47260609-47260902(+)$1	293	239	249	16.2745
CCAGCCCCAU	chr9:136334503-136334743(+)$1	240	73	83	15.8823
CCAGGCCCUG	chr17:74078586-74078876(-)$1	290	127	137	17.7450
GCAGCCCAUG	chr16:89710962-89711201(-)$1	239	4	14	13.3333
ccaucccccg	chr3:50257958-50258209(+)$1	251	21	31	13.5294
CCAGGCCCUG	chr3:195590516-195590839(-)$1	323	127	137	17.7450
CCUGGCCCUC	chr20:627633-627906(-)$1	273	34	44	12.3529
CCAGCCCUAC	chr9:136333966-136334272(+)$1	306	45	55	13.0392
CCUGCCCCUG	chr8:145066924-145067242(+)$1	318	134	144	17.3529
CCAGCCCUUG	chr11:47183176-47183590(+)$1	414	58	68	17.3529
CCAGAGCCUG	chr5:140895622-140895948(-)$1	326	174	184	12.8431
CCAGCCACCG	chr16:27472496-27472788(-)$1	292	143	153	14.7058
CCAGCCCCAC	chr8:22432780-22433062(+)$1	282	174	184	16.5686
UCUGCCCCUG	chr19:51301503-51301810(-)$1	307	30	40	13.2352
CCCGCCCCUG	chr14:77941782-77942032(-)$1	250	169	179	16.9607
CCAGCCCUGG	chr17:40176940-40177219(+)$1	279	126	136	14.5098
UCAGCCCCUC	chr5:73925425-73925679(-)$1	254	120	130	14.9019
CCAGCCCGAG	chr12:120534767-120535034(-)$1	267	28	38	14.6078
CCAGGCCCCC	chr14:99980858-99981163(-)$1	305	60	70	13.2352
CCAGCCCGUC	chr1:20826206-20826453(-)$1	247	200	210	15.1960
GCAGUCCCUG	chr2:97259874-97260190(-)$1	316	15	25	13.4313
CCUGCCUCUG	chr17:17394931-17395240(+)$1	309	172	182	13.5294
ccagccUUUG	chr8:48890256-48890523(+)$1	267	56	66	13.5294
CCAGCCCCUG	chr1:32662557-32662857(+)$1	300	171	181	20.8823
CCAGCCACAG	chr7:1585885-1586143(-)$1	258	131	141	14.9019
CCAGGCACUG	chr17:27187595-27187982(+)$1	387	59	69	14.2156
CCAGCCCCGU	chr19:40738848-40739119(-)$1	271	78	88	15.4901
GCAGACCCUG	chr17:29858743-29859053(+)$1	310	53	63	13.5294
CCAGCCCCUC	chr7:75615899-75616127(+)$1	228	192	202	19.0196
ccagccacuc	chr18:72187450-72187794(+)$1	344	323	333	15.4901
CGAGCCCCUC	chrX:70444302-70444564(+)$1	262	155	165	14.5098
CCAGCCCUGC	chr13:113536921-113537154(+)$1	233	87	97	12.6470
CCAGCCCCCG	chr16:81743444-81743744(+)$1	300	134	144	18.2352
CCAGCUCCUG	chr14:70177980-70178266(+)$1	286	49	59	16.5686
CCAGCCAAUG	chr17:6589062-6589406(-)$1	344	10	20	13.6274
CCAGUCCCUG	chr19:14626330-14626671(-)$1	341	202	212	17.2549
GCAGCCCCAG	chr20:61598729-61599036(+)$1	307	161	171	14.6078
CCAGCCCCUU	chr17:37827775-37828070(-)$1	295	244	254	18.3333
CCAGGCCCCU	chr19:52729192-52729491(+)$1	299	157	167	12.5490
ccagccucag	chr8:37636094-37636400(+)$1	306	183	193	14.6078
CCGGCUCCUG	chr19:5152095-5152360(+)$1	265	92	102	12.5490
CCCGCCCCUG	chr9:136334305-136334631(+)$1	326	163	173	16.9607
GCUGCCCCUG	chr18:77662789-77663072(-)$1	283	29	39	13.5294
CCAGCCCCCU	chr3:52083579-52083898(-)$1	319	298	308	15.6862

#otherMatches

#Struct PSSM
ccdddddddd	chr17:73842188-73842491(-)$1	303	93	103	17.3529
::::eeeeee	chr19:13063891-13064208(+)$1	317	186	196	12.4509
KKDDDD::::	chr19:42880259-42880577(+)$1	318	55	65	13.4313
44dddd5555	chr5:139625355-139625627(-)$1	272	94	104	15.4901
ddddlllddd	chr22:36884599-36884874(-)$1	275	111	121	13.0392
GCCCLLLCCC	chr11:71808683-71808966(-)$1	283	149	159	13.6274
GGGG:dddd[	chr19:11033053-11033320(+)$1	267	70	80	16.3725
HH}DDDD:::	chr19:47260609-47260902(+)$1	293	239	249	16.2745
dddd::::::	chr9:136334503-136334743(+)$1	240	73	83	15.8823
dddccc:::e	chr17:74078586-74078876(-)$1	290	127	137	17.7450
ggggggbbll	chr16:89710962-89711201(-)$1	239	4	14	13.3333
e!!bbmmmmb	chr3:50257958-50258209(+)$1	251	21	31	13.5294
]=========	chr3:195590516-195590839(-)$1	323	127	137	17.7450
fffffcccll	chr20:627633-627906(-)$1	273	34	44	12.3529
iiiiittttt	chr9:136333966-136334272(+)$1	306	45	55	13.0392
addddbb]dd	chr8:145066924-145067242(+)$1	318	134	144	17.3529
ppccc:bb[d	chr11:47183176-47183590(+)$1	414	58	68	17.3529
ccccffffff	chr5:140895622-140895948(-)$1	326	174	184	12.8431
gggggg::::	chr16:27472496-27472788(-)$1	292	143	153	14.7058
ddddvvvvvv	chr8:22432780-22433062(+)$1	282	174	184	16.5686
FFFCCC::::	chr19:51301503-51301810(-)$1	307	30	40	13.2352
===xxxxxxx	chr14:77941782-77942032(-)$1	250	169	179	16.9607
EEE:ffffff	chr17:40176940-40177219(+)$1	279	126	136	14.5098
DD}GGGGGGG	chr5:73925425-73925679(-)$1	254	120	130	14.9019
###ccclllc	chr12:120534767-120535034(-)$1	267	28	38	14.6078
mffffff:dd	chr14:99980858-99981163(-)$1	305	60	70	13.2352
444ccc]ccc	chr1:20826206-20826453(-)$1	247	200	210	15.1960
CCKKDDDD:c	chr2:97259874-97260190(-)$1	316	15	25	13.4313
hhppppppph	chr17:17394931-17395240(+)$1	309	172	182	13.5294
e:DDDD::::	chr8:48890256-48890523(+)$1	267	56	66	13.5294
:dddd[a[hh	chr1:32662557-32662857(+)$1	300	171	181	20.8823
GGGGGG{BB{	chr7:1585885-1586143(-)$1	258	131	141	14.9019
ffff]bb::I	chr17:27187595-27187982(+)$1	387	59	69	14.2156
CCC{FFFFFF	chr19:40738848-40739119(-)$1	271	78	88	15.4901
HHHHHHH{DD	chr17:29858743-29859053(+)$1	310	53	63	13.5294
HYYDDDDccc	chr7:75615899-75616127(+)$1	228	192	202	19.0196
ZDDDD::eee	chr18:72187450-72187794(+)$1	344	323	333	15.4901
Dccclllccc	chrX:70444302-70444564(+)$1	262	155	165	14.5098
e!!ffffff[	chr13:113536921-113537154(+)$1	233	87	97	12.6470
HHHHHHHBB{	chr16:81743444-81743744(+)$1	300	134	144	18.2352
eqqqqqqqqe	chr14:70177980-70178266(+)$1	286	49	59	16.5686
:::bb"""ee	chr17:6589062-6589406(-)$1	344	10	20	13.6274
333a]dddd=	chr19:14626330-14626671(-)$1	341	202	212	17.2549
==========	chr20:61598729-61599036(+)$1	307	161	171	14.6078
"""bbooooo	chr17:37827775-37828070(-)$1	295	244	254	18.3333
DDDDiiiiii	chr19:52729192-52729491(+)$1	299	157	167	12.5490
DDDDDDDHHH	chr8:37636094-37636400(+)$1	306	183	193	14.6078
eeeellleee	chr19:5152095-5152360(+)$1	265	92	102	12.5490
IIIIIIIYYD	chr9:136334305-136334631(+)$1	326	163	173	16.9607
EEOOOOOOCC	chr18:77662789-77663072(-)$1	283	29	39	13.5294
JJJJ::::::	chr3:52083579-52083898(-)$1	319	298	308	15.6862

#DB
))))))))))	chr17:73842188-73842491(-)$1	1	93	103	17.3529
....((((((	chr19:13063891-13064208(+)$1	1	186	196	12.4509
..((((....	chr19:42880259-42880577(+)$1	1	55	65	13.4313
..))))....	chr5:139625355-139625627(-)$1	1	94	104	15.4901
((((...)))	chr22:36884599-36884874(-)$1	1	111	121	13.0392
((((...(((	chr11:71808683-71808966(-)$1	1	149	159	13.6274
((((.((((.	chr19:11033053-11033320(+)$1	1	70	80	16.3725
)).))))...	chr19:47260609-47260902(+)$1	1	239	249	16.2745
))))......	chr9:136334503-136334743(+)$1	1	73	83	15.8823
))))))...(	chr17:74078586-74078876(-)$1	1	127	137	17.7450
((((((((..	chr16:89710962-89711201(-)$1	1	4	14	13.3333
(..((....)	chr3:50257958-50258209(+)$1	1	21	31	13.5294
.)))))))))	chr3:195590516-195590839(-)$1	1	127	137	17.7450
((((((((..	chr20:627633-627906(-)$1	1	34	44	12.3529
(((((.....	chr9:136333966-136334272(+)$1	1	45	55	13.0392
))))))).))	chr8:145066924-145067242(+)$1	1	134	144	17.3529
..))).((.(	chr11:47183176-47183590(+)$1	1	58	68	17.3529
((((((((((	chr5:140895622-140895948(-)$1	1	174	184	12.8431
))))))....	chr16:27472496-27472788(-)$1	1	143	153	14.7058
((((......	chr8:22432780-22433062(+)$1	1	174	184	16.5686
((((((....	chr19:51301503-51301810(-)$1	1	30	40	13.2352
(((.......	chr14:77941782-77942032(-)$1	1	169	179	16.9607
(((.((((((	chr17:40176940-40177219(+)$1	1	126	136	14.5098
)).)))))))	chr5:73925425-73925679(-)$1	1	120	130	14.9019
...(((...)	chr12:120534767-120535034(-)$1	1	28	38	14.6078
.)))))).((	chr14:99980858-99981163(-)$1	1	60	70	13.2352
...))).)))	chr1:20826206-20826453(-)$1	1	200	210	15.1960
((..((((.(	chr2:97259874-97260190(-)$1	1	15	25	13.4313
((.......)	chr17:17394931-17395240(+)$1	1	172	182	13.5294
).((((....	chr8:48890256-48890523(+)$1	1	56	66	13.5294
.((((.(.((	chr1:32662557-32662857(+)$1	1	171	181	20.8823
((((((.((.	chr7:1585885-1586143(-)$1	1	131	141	14.9019
)))).))..(	chr17:27187595-27187982(+)$1	1	59	69	14.2156
(((.((((((	chr19:40738848-40739119(-)$1	1	78	88	15.4901
(((((((.((	chr17:29858743-29859053(+)$1	1	53	63	13.5294
)..))))(((	chr7:75615899-75616127(+)$1	1	192	202	19.0196
.))))..(((	chr18:72187450-72187794(+)$1	1	323	333	15.4901
)(((...)))	chrX:70444302-70444564(+)$1	1	155	165	14.5098
(..((((((.	chr13:113536921-113537154(+)$1	1	87	97	12.6470
(((((((((.	chr16:81743444-81743744(+)$1	1	134	144	18.2352
(........)	chr14:70177980-70178266(+)$1	1	49	59	16.5686
...((...((	chr17:6589062-6589406(-)$1	1	10	20	13.6274
...).))))(	chr19:14626330-14626671(-)$1	1	202	212	17.2549
))))))))))	chr20:61598729-61599036(+)$1	1	161	171	14.6078
...((.....	chr17:37827775-37828070(-)$1	1	244	254	18.3333
))))((((((	chr19:52729192-52729491(+)$1	1	157	167	12.5490
))))))))))	chr8:37636094-37636400(+)$1	1	183	193	14.6078
((((...)))	chr19:5152095-5152360(+)$1	1	92	102	12.5490
)))))))..)	chr9:136334305-136334631(+)$1	1	163	173	16.9607
((......((	chr18:77662789-77663072(-)$1	1	29	39	13.5294
))))......	chr3:52083579-52083898(-)$1	1	298	308	15.6862

#PSSM
C : 0.76	c : 0.09	G : 0.09	U : 0.03	
C : 0.84	c : 0.09	G : 0.03	A : 0.01	
A : 0.72	U : 0.11	a : 0.09	C : 0.03	G : 0.01	
G : 0.88	g : 0.07	C : 0.01	u : 0.01	
C : 0.66	G : 0.13	c : 0.09	A : 0.05	U : 0.03	
C : 0.84	c : 0.07	U : 0.03	u : 0.01	G : 0.01	
C : 0.80	A : 0.07	a : 0.03	U : 0.03	c : 0.01	u : 0.01	
C : 0.72	U : 0.09	c : 0.07	A : 0.05	G : 0.03	
U : 0.60	A : 0.13	C : 0.09	G : 0.07	u : 0.03	c : 0.01	a : 0.01	
G : 0.56	C : 0.23	U : 0.11	g : 0.05	c : 0.01	

#score	768.8235294117653
#seq	51
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_transcript_m2_run2.nuc.txt

#NT
uggg	chr1:67679663-67679909(+)$1	246	49	53	12.0000
uggg	chr5:65235052-65235382(+)$1	330	104	108	12.0000
uggg	chr7:102032121-102032372(+)$1	251	21	25	12.0000
uggg	chr19:21924633-21924891(-)$1	258	43	47	12.0000
uggg	chr12:96741172-96741464(-)$1	292	234	238	12.0000
uggg	chr9:37154637-37154878(+)$1	241	1	5	12.0000
UGGG	chr16:88954563-88954854(-)$1	291	20	24	12.0000
UGGG	chr17:79220483-79220772(-)$1	289	111	115	12.0000
UGGG	chr1:27031433-27031678(+)$1	245	56	60	12.0000
UGGG	chr16:85686347-85686637(+)$1	290	7	11	12.0000
UGGG	chr17:79223893-79224135(-)$1	242	35	39	12.0000
uggg	chr16:23914071-23914303(+)$1	232	145	149	12.0000
uggg	chr4:151317462-151317745(-)$1	283	35	39	12.0000
UGGG	chr3:43755157-43755451(+)$1	294	90	94	12.0000
uggg	chr17:26918253-26918543(-)$1	290	0	4	12.0000
uggg	chr10:70282130-70282378(-)$1	248	55	59	12.0000
uggg	chr2:10304339-10304617(+)$1	278	51	55	12.0000
uggg	chr11:66978134-66978446(+)$1	312	248	252	12.0000
uggg	chr19:41874828-41875079(+)$1	251	48	52	12.0000
UGGG	chr1:146380315-146380527(+)$1	212	192	196	12.0000
uggg	chr11:31490437-31490699(-)$1	262	17	21	12.0000
uggg	chr4:120187445-120187708(+)$1	263	23	27	12.0000
uggg	chr3:10296601-10296869(+)$1	268	224	228	12.0000
uggg	chr1:150193601-150193903(-)$1	302	235	239	12.0000
UGGG	chr19:42370520-42370795(+)$1	275	9	13	12.0000
UGGG	chr19:16709197-16709490(-)$1	293	104	108	12.0000
uggg	chr22:21278292-21278527(+)$1	235	75	79	12.0000
uggg	chr10:27054352-27054691(-)$1	339	198	202	12.0000
uggg	chr12:57775874-57776138(-)$1	264	115	119	12.0000
uggg	chr1:65834344-65834614(+)$1	270	205	209	12.0000
uggg	chr1:235448033-235448304(-)$1	271	42	46	12.0000
UGGG	chr1:10516955-10517232(-)$1	277	139	143	12.0000
uggg	chr3:33852299-33852573(+)$1	274	210	214	12.0000
uggg	chr1:33254962-33255264(-)$1	302	31	35	12.0000
uggg	chr10:73958163-73958542(-)$1	379	325	329	12.0000
UGGG	chr1:12059341-12059614(+)$1	273	131	135	12.0000
uggg	chr17:42123026-42123367(-)$1	341	19	23	12.0000
uggg	chr11:5478300-5478559(-)$1	259	195	199	12.0000
Uggg	chr4:80147126-80147445(+)$1	319	190	194	12.0000
uggg	chr19:30479560-30479851(+)$1	291	45	49	12.0000
uGGG	chr2:236609745-236610083(+)$1	338	78	82	12.0000
uggg	chr9:133628563-133628823(+)$1	260	54	58	12.0000
uggg	chr7:102018522-102018781(+)$1	259	61	65	12.0000
UGGG	chr21:9930418-9930666(-)$1	248	107	111	12.0000
uggg	chr11:61231783-61232019(+)$1	236	6	10	12.0000
uggg	chr16:30713841-30714119(+)$1	278	217	221	12.0000
UGGG	chr16:88954492-88954763(-)$1	271	24	28	12.0000
uggg	chr10:71921998-71922272(-)$1	274	251	255	12.0000
UGGG	chr5:131544339-131544637(-)$1	298	86	90	12.0000
uggg	chr19:11561213-11561516(+)$1	303	54	58	12.0000
uggg	chr8:100018477-100018761(-)$1	284	29	33	12.0000
uggg	chr22:21278410-21278710(+)$1	300	39	43	12.0000
uggg	chr20:43560441-43560699(+)$1	258	110	114	12.0000
UGGG	chr16:23992120-23992396(+)$1	276	82	86	12.0000
UGGG	chr16:15031894-15032176(+)$1	282	223	227	12.0000
UGGG	chrX:130868546-130868869(-)$1	323	112	116	12.0000
UGGG	chr20:31150571-31150832(-)$1	261	209	213	12.0000
uggg	chr1:29235779-29236062(+)$1	283	92	96	12.0000
uggg	chr13:50621371-50621634(-)$1	263	82	86	12.0000
uggg	chr15:44041925-44042213(+)$1	288	20	24	12.0000
UGGG	chrM:14222-14433(-)$1	211	2	6	12.0000
uggg	chr20:42313092-42313407(+)$1	315	49	53	12.0000
uggg	chr21:34822420-34822672(-)$1	252	18	22	12.0000
UGGG	chr19:2200406-2200641(+)$1	235	9	13	12.0000
UGGG	chr7:100234358-100234614(-)$1	256	51	55	12.0000
UGGG	chr2:102375636-102375919(+)$1	283	0	4	12.0000
UGGG	chr16:23994124-23994410(+)$1	286	152	156	12.0000
uggg	chr9:37160662-37160966(+)$1	304	144	148	12.0000
UGGG	chr17:27212844-27213132(-)$1	288	21	25	12.0000
UGGG	chrX:130863252-130863524(-)$1	272	52	56	12.0000
uggg	chr1:1201481-1201776(-)$1	295	54	58	12.0000
uggg	chr16:89535637-89535889(-)$1	252	11	15	12.0000
uggg	chr15:66963229-66963517(+)$1	288	79	83	12.0000
uggg	chr20:61563380-61563644(-)$1	264	9	13	12.0000
UGGG	chr1:143402896-143403178(-)$1	282	50	54	12.0000
uggg	chr3:49116299-49116592(-)$1	293	39	43	12.0000
UGGG	chr16:88954283-88954544(-)$1	261	21	25	12.0000
uggg	chr7:25001781-25002075(-)$1	294	268	272	12.0000
UGGG	chr8:93767777-93768086(-)$1	309	268	272	12.0000
UGGG	chr5:134262612-134262878(+)$1	266	0	4	12.0000
uggg	chr19:41880420-41880691(+)$1	271	225	229	12.0000
uggg	chr4:68339909-68340215(-)$1	306	136	140	12.0000
UGGG	chr16:88733824-88734129(+)$1	305	60	64	12.0000
UGGG	chr17:58312086-58312442(-)$1	356	87	91	12.0000
UGGG	chr8:28921335-28921581(+)$1	246	111	115	12.0000

#otherMatches

#Struct PSSM
33gg	chr11:61581003-61581262(-)$1	259	74	78	12.0000
gggg	chr1:67679663-67679909(+)$1	246	49	53	12.0000
eeee	chr5:65235052-65235382(+)$1	330	104	108	12.0000
cccc	chr7:102032121-102032372(+)$1	251	21	25	12.0000
====	chr19:21924633-21924891(-)$1	258	43	47	12.0000
iiii	chr12:96741172-96741464(-)$1	292	234	238	12.0000
GGGG	chr9:37154637-37154878(+)$1	241	1	5	12.0000
EEEE	chr16:88954563-88954854(-)$1	291	20	24	12.0000
c[a[	chr17:79220483-79220772(-)$1	289	111	115	12.0000
eeee	chr1:27031433-27031678(+)$1	245	56	60	12.0000
ccee	chr16:85686347-85686637(+)$1	290	7	11	12.0000
lddd	chr17:79223893-79224135(-)$1	242	35	39	12.0000
ffff	chr16:23914071-23914303(+)$1	232	145	149	12.0000
b]cc	chr4:151317462-151317745(-)$1	283	35	39	12.0000
bba4	chr3:43755157-43755451(+)$1	294	90	94	12.0000
eeee	chr17:26918253-26918543(-)$1	290	0	4	12.0000
[ggg	chr10:70282130-70282378(-)$1	248	55	59	12.0000
2a]d	chr2:10304339-10304617(+)$1	278	51	55	12.0000
oocc	chr11:66978134-66978446(+)$1	312	248	252	12.0000
eee=	chr19:41874828-41875079(+)$1	251	48	52	12.0000
dddl	chr1:146380315-146380527(+)$1	212	192	196	12.0000
eeee	chr11:31490437-31490699(-)$1	262	17	21	12.0000
LDDD	chr4:120187445-120187708(+)$1	263	23	27	12.0000
eeee	chr3:10296601-10296869(+)$1	268	224	228	12.0000
ffff	chr1:150193601-150193903(-)$1	302	235	239	12.0000
GGGG	chr19:42370520-42370795(+)$1	275	9	13	12.0000
ff]a	chr19:16709197-16709490(-)$1	293	104	108	12.0000
dddd	chr22:21278292-21278527(+)$1	235	75	79	12.0000
2===	chr10:27054352-27054691(-)$1	339	198	202	12.0000
ffff	chr12:57775874-57776138(-)$1	264	115	119	12.0000
eeee	chr1:65834344-65834614(+)$1	270	205	209	12.0000
JJJJ	chr1:235448033-235448304(-)$1	271	42	46	12.0000
hhhh	chr1:10516955-10517232(-)$1	277	139	143	12.0000
ffff	chr3:33852299-33852573(+)$1	274	210	214	12.0000
gggg	chr1:33254962-33255264(-)$1	302	31	35	12.0000
eeee	chr10:73958163-73958542(-)$1	379	325	329	12.0000
2ddd	chr1:12059341-12059614(+)$1	273	131	135	12.0000
FFFe	chr17:42123026-42123367(-)$1	341	19	23	12.0000
eeee	chr11:5478300-5478559(-)$1	259	195	199	12.0000
ffff	chr4:80147126-80147445(+)$1	319	190	194	12.0000
mmmc	chr19:30479560-30479851(+)$1	291	45	49	12.0000
ggii	chr2:236609745-236610083(+)$1	338	78	82	12.0000
ccnn	chr9:133628563-133628823(+)$1	260	54	58	12.0000
2eee	chr7:102018522-102018781(+)$1	259	61	65	12.0000
eeed	chr21:9930418-9930666(-)$1	248	107	111	12.0000
NNFF	chr11:61231783-61232019(+)$1	236	6	10	12.0000
HHHH	chr16:30713841-30714119(+)$1	278	217	221	12.0000
efff	chr16:88954492-88954763(-)$1	271	24	28	12.0000
eeee	chr10:71921998-71922272(-)$1	274	251	255	12.0000
dqqq	chr5:131544339-131544637(-)$1	298	86	90	12.0000
III:	chr19:11561213-11561516(+)$1	303	54	58	12.0000
b]cc	chr8:100018477-100018761(-)$1	284	29	33	12.0000
EEEE	chr22:21278410-21278710(+)$1	300	39	43	12.0000
>>>>	chr20:43560441-43560699(+)$1	258	110	114	12.0000
=FFF	chr16:23992120-23992396(+)$1	276	82	86	12.0000
eeeo	chr16:15031894-15032176(+)$1	282	223	227	12.0000
CCCE	chrX:130868546-130868869(-)$1	323	112	116	12.0000
ZFFF	chr20:31150571-31150832(-)$1	261	209	213	12.0000
f[an	chr1:29235779-29236062(+)$1	283	92	96	12.0000
iii[	chr13:50621371-50621634(-)$1	263	82	86	12.0000
ddd[	chr15:44041925-44042213(+)$1	288	20	24	12.0000
:::g	chrM:14222-14433(-)$1	211	2	6	12.0000
:ddd	chr20:42313092-42313407(+)$1	315	49	53	12.0000
fccc	chr21:34822420-34822672(-)$1	252	18	22	12.0000
DDDD	chr19:2200406-2200641(+)$1	235	9	13	12.0000
ddmm	chr7:100234358-100234614(-)$1	256	51	55	12.0000
:DDD	chr2:102375636-102375919(+)$1	283	0	4	12.0000
gggg	chr16:23994124-23994410(+)$1	286	152	156	12.0000
gggg	chr9:37160662-37160966(+)$1	304	144	148	12.0000
JJJJ	chr17:27212844-27213132(-)$1	288	21	25	12.0000
ffff	chrX:130863252-130863524(-)$1	272	52	56	12.0000
eeee	chr1:1201481-1201776(-)$1	295	54	58	12.0000
fffn	chr16:89535637-89535889(-)$1	252	11	15	12.0000
]bb]	chr15:66963229-66963517(+)$1	288	79	83	12.0000
GGG{	chr20:61563380-61563644(-)$1	264	9	13	12.0000
ddgg	chr1:143402896-143403178(-)$1	282	50	54	12.0000
hhhh	chr3:49116299-49116592(-)$1	293	39	43	12.0000
HHHL	chr16:88954283-88954544(-)$1	261	21	25	12.0000
YDDD	chr7:25001781-25002075(-)$1	294	268	272	12.0000
:EEE	chr8:93767777-93768086(-)$1	309	268	272	12.0000
::::	chr5:134262612-134262878(+)$1	266	0	4	12.0000
ffff	chr19:41880420-41880691(+)$1	271	225	229	12.0000
gggg	chr4:68339909-68340215(-)$1	306	136	140	12.0000
gggg	chr16:88733824-88734129(+)$1	305	60	64	12.0000
eeed	chr17:58312086-58312442(-)$1	356	87	91	12.0000
eeee	chr8:28921335-28921581(+)$1	246	111	115	12.0000

#DB
..))	chr11:61581003-61581262(-)$1	1	74	78	12.0000
((((	chr1:67679663-67679909(+)$1	1	49	53	12.0000
))))	chr5:65235052-65235382(+)$1	1	104	108	12.0000
)(((	chr7:102032121-102032372(+)$1	1	21	25	12.0000
((((	chr19:21924633-21924891(-)$1	1	43	47	12.0000
))))	chr12:96741172-96741464(-)$1	1	234	238	12.0000
((((	chr9:37154637-37154878(+)$1	1	1	5	12.0000
((((	chr16:88954563-88954854(-)$1	1	20	24	12.0000
(.(.	chr17:79220483-79220772(-)$1	1	111	115	12.0000
))((	chr1:27031433-27031678(+)$1	1	56	60	12.0000
((((	chr16:85686347-85686637(+)$1	1	7	11	12.0000
.)))	chr17:79223893-79224135(-)$1	1	35	39	12.0000
))))	chr16:23914071-23914303(+)$1	1	145	149	12.0000
).))	chr4:151317462-151317745(-)$1	1	35	39	12.0000
))).	chr3:43755157-43755451(+)$1	1	90	94	12.0000
((((	chr17:26918253-26918543(-)$1	1	0	4	12.0000
.(((	chr10:70282130-70282378(-)$1	1	55	59	12.0000
.).)	chr2:10304339-10304617(+)$1	1	51	55	12.0000
..))	chr11:66978134-66978446(+)$1	1	248	252	12.0000
((((	chr19:41874828-41875079(+)$1	1	48	52	12.0000
(((.	chr1:146380315-146380527(+)$1	1	192	196	12.0000
))))	chr11:31490437-31490699(-)$1	1	17	21	12.0000
.(((	chr4:120187445-120187708(+)$1	1	23	27	12.0000
))))	chr3:10296601-10296869(+)$1	1	224	228	12.0000
((((	chr1:150193601-150193903(-)$1	1	235	239	12.0000
((((	chr19:42370520-42370795(+)$1	1	9	13	12.0000
)).)	chr19:16709197-16709490(-)$1	1	104	108	12.0000
))))	chr22:21278292-21278527(+)$1	1	75	79	12.0000
.)))	chr10:27054352-27054691(-)$1	1	198	202	12.0000
))))	chr12:57775874-57776138(-)$1	1	115	119	12.0000
((((	chr1:65834344-65834614(+)$1	1	205	209	12.0000
((((	chr1:235448033-235448304(-)$1	1	42	46	12.0000
((((	chr1:10516955-10517232(-)$1	1	139	143	12.0000
))))	chr3:33852299-33852573(+)$1	1	210	214	12.0000
((((	chr1:33254962-33255264(-)$1	1	31	35	12.0000
))))	chr10:73958163-73958542(-)$1	1	325	329	12.0000
.)))	chr1:12059341-12059614(+)$1	1	131	135	12.0000
((((	chr17:42123026-42123367(-)$1	1	19	23	12.0000
))))	chr11:5478300-5478559(-)$1	1	195	199	12.0000
((((	chr4:80147126-80147445(+)$1	1	190	194	12.0000
...)	chr19:30479560-30479851(+)$1	1	45	49	12.0000
))((	chr2:236609745-236610083(+)$1	1	78	82	12.0000
((..	chr9:133628563-133628823(+)$1	1	54	58	12.0000
.)))	chr7:102018522-102018781(+)$1	1	61	65	12.0000
)))(	chr21:9930418-9930666(-)$1	1	107	111	12.0000
..((	chr11:61231783-61232019(+)$1	1	6	10	12.0000
))))	chr16:30713841-30714119(+)$1	1	217	221	12.0000
((((	chr16:88954492-88954763(-)$1	1	24	28	12.0000
))))	chr10:71921998-71922272(-)$1	1	251	255	12.0000
(...	chr5:131544339-131544637(-)$1	1	86	90	12.0000
(((.	chr19:11561213-11561516(+)$1	1	54	58	12.0000
).))	chr8:100018477-100018761(-)$1	1	29	33	12.0000
((((	chr22:21278410-21278710(+)$1	1	39	43	12.0000
....	chr20:43560441-43560699(+)$1	1	110	114	12.0000
)(((	chr16:23992120-23992396(+)$1	1	82	86	12.0000
(((.	chr16:15031894-15032176(+)$1	1	223	227	12.0000
))))	chrX:130868546-130868869(-)$1	1	112	116	12.0000
.)))	chr20:31150571-31150832(-)$1	1	209	213	12.0000
(.(.	chr1:29235779-29236062(+)$1	1	92	96	12.0000
(((.	chr13:50621371-50621634(-)$1	1	82	86	12.0000
(((.	chr15:44041925-44042213(+)$1	1	20	24	12.0000
...(	chrM:14222-14433(-)$1	1	2	6	12.0000
.(((	chr20:42313092-42313407(+)$1	1	49	53	12.0000
((((	chr21:34822420-34822672(-)$1	1	18	22	12.0000
((((	chr19:2200406-2200641(+)$1	1	9	13	12.0000
((..	chr7:100234358-100234614(-)$1	1	51	55	12.0000
.(((	chr2:102375636-102375919(+)$1	1	0	4	12.0000
))))	chr16:23994124-23994410(+)$1	1	152	156	12.0000
((((	chr9:37160662-37160966(+)$1	1	144	148	12.0000
((((	chr17:27212844-27213132(-)$1	1	21	25	12.0000
((((	chrX:130863252-130863524(-)$1	1	52	56	12.0000
))))	chr1:1201481-1201776(-)$1	1	54	58	12.0000
(((.	chr16:89535637-89535889(-)$1	1	11	15	12.0000
.)).	chr15:66963229-66963517(+)$1	1	79	83	12.0000
(((.	chr20:61563380-61563644(-)$1	1	9	13	12.0000
((((	chr1:143402896-143403178(-)$1	1	50	54	12.0000
((((	chr3:49116299-49116592(-)$1	1	39	43	12.0000
(((.	chr16:88954283-88954544(-)$1	1	21	25	12.0000
.)))	chr7:25001781-25002075(-)$1	1	268	272	12.0000
.)))	chr8:93767777-93768086(-)$1	1	268	272	12.0000
....	chr5:134262612-134262878(+)$1	1	0	4	12.0000
))))	chr19:41880420-41880691(+)$1	1	225	229	12.0000
))))	chr4:68339909-68340215(-)$1	1	136	140	12.0000
))))	chr16:88733824-88734129(+)$1	1	60	64	12.0000
)))(	chr17:58312086-58312442(-)$1	1	87	91	12.0000
((((	chr8:28921335-28921581(+)$1	1	111	115	12.0000

#PSSM
u : 0.61	U : 0.38	
g : 0.61	G : 0.38	
g : 0.61	G : 0.38	
g : 0.61	G : 0.38	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_CDS_m1_run2.nuc.txt

#NT
GGAGAAGG	chr1:144931228-144931488(-)$1	260	31	39	16.8431
GCAGAAGG	chr8:144940371-144940699(-)$1	328	252	260	19.5882
GGAGAAGG	chr11:62287329-62287587(-)$1	258	81	89	16.8431
gcagcagg	chr13:108518612-108518877(-)$1	265	223	231	15.6666
GCAGAAGC	chr14:102452439-102452736(+)$1	297	159	167	15.6666
GCAGAAGA	chr12:6707358-6707602(-)$1	244	34	42	15.7647
GCAGAGGG	chr9:134350850-134351119(+)$1	269	112	120	15.8627
GCAGAGGG	chr11:62296487-62296721(-)$1	234	11	19	15.8627
GGAGAAGG	chr11:71724678-71724924(-)$1	246	101	109	16.8431
GCAGGAGG	chr8:41525732-41526003(-)$1	271	182	190	16.1568
GCAGAAGA	chr4:13600891-13601183(-)$1	292	34	42	15.7647
GCAGGAGG	chr8:144943804-144944041(-)$1	237	114	122	16.1568
GCAGGAGG	chr8:144994114-144994365(-)$1	251	36	44	16.1568
GCAGAAGC	chr16:89348264-89348494(-)$1	230	41	49	15.6666
GCAGGAGG	chr22:50277366-50277658(+)$1	292	78	86	16.1568
GCAGAAGC	chr16:89348367-89348659(-)$1	292	206	214	15.6666
GGAGAAGG	chr19:55558713-55558934(+)$1	221	54	62	16.8431
GCUGAAGG	chr10:75551927-75552238(+)$1	311	71	79	15.4705
GAAGAAGG	chr16:89349564-89349798(-)$1	234	103	111	15.8627
CCAGAAGG	chr22:36688063-36688341(-)$1	278	135	143	15.1764
GCAGAGGG	chr11:62299445-62299694(-)$1	249	95	103	15.8627
CCAGAAGG	chr8:94745831-94746079(-)$1	248	111	119	15.1764
GCAGAAGG	chr8:144996917-144997168(-)$1	251	73	81	19.5882
GGAGAAGG	chr11:62289982-62290225(-)$1	243	175	183	16.8431
GCAGAGGG	chr11:62299041-62299279(-)$1	238	64	72	15.8627
GCAGAAGA	chr19:50354091-50354338(-)$1	247	137	145	15.7647
CCAGAAGG	chr11:62288115-62288367(-)$1	252	192	200	15.1764
GCAGAAGG	chr11:61897880-61898135(+)$1	255	125	133	19.5882
GGAGAAGG	chr1:16255531-16255795(+)$1	264	59	67	16.8431
GCGGAAGG	chr6:132021702-132021959(+)$1	257	125	133	15.1764
GCUGAAGG	chr11:62297859-62298103(-)$1	244	129	137	15.4705
GCAGAGGG	chr11:62296569-62296817(-)$1	248	107	115	15.8627
GCUGAAGG	chr16:89351329-89351586(-)$1	257	160	168	15.4705
GCAGAAGG	chr12:132425786-132426051(+)$1	265	255	263	19.5882
GGAGAAGG	chr11:62292333-62292569(-)$1	236	173	181	16.8431
GCAGAACG	chr5:139493785-139494059(+)$1	274	214	222	14.7843
GCUGAAGG	chr11:62297942-62298194(-)$1	252	220	228	15.4705
GGAGAAGG	chr8:144994064-144994289(-)$1	225	143	151	16.8431
GGAGAAGG	chr16:87735206-87735481(-)$1	275	86	94	16.8431
GCAGAAGG	chr16:89349356-89349678(-)$1	322	253	261	19.5882
GGAGAAGG	chr21:47663450-47663764(+)$1	314	261	269	16.8431
GCAGAAGA	chr8:94748322-94748567(-)$1	245	165	173	15.7647
GCAGCAGG	chr19:5719804-5720060(-)$1	256	16	24	15.6666
GGAGAAGG	chr19:55558602-55558857(+)$1	255	165	173	16.8431
GCAGGAGG	chr8:144999257-144999520(-)$1	263	211	219	16.1568
GCAGAUGG	chr1:16256263-16256472(+)$1	209	11	19	15.3725
GCagaagg	chr16:89351554-89351809(-)$1	255	200	208	19.5882
GCAGGAGG	chr1:1691148-1691392(-)$1	244	207	215	16.1568
GCAGAAGU	chr3:49050532-49050811(+)$1	279	252	260	15.4705
GCAGAGGG	chr11:62296654-62296913(-)$1	259	203	211	15.8627

#otherMatches

#Struct PSSM
GG{AOOOO	chr8:144999420-144999672(-)$1	252	51	59	16.1568
FFFF{BB:	chr1:144931228-144931488(-)$1	260	31	39	16.8431
A}CCC:dd	chr8:144940371-144940699(-)$1	328	252	260	19.5882
dddd::ee	chr11:62287329-62287587(-)$1	258	81	89	16.8431
bb]bb::H	chr13:108518612-108518877(-)$1	265	223	231	15.6666
dd####bb	chr14:102452439-102452736(+)$1	297	159	167	15.6666
CNNNNNDD	chr12:6707358-6707602(-)$1	244	34	42	15.7647
ooooobbc	chr9:134350850-134351119(+)$1	269	112	120	15.8627
MCCC{CCC	chr11:62296487-62296721(-)$1	234	11	19	15.8627
nnnnnddd	chr11:71724678-71724924(-)$1	246	101	109	16.8431
]a]a22dd	chr8:41525732-41526003(-)$1	271	182	190	16.1568
fffttttt	chr4:13600891-13601183(-)$1	292	34	42	15.7647
dddd!!bb	chr8:144943804-144944041(-)$1	237	114	122	16.1568
dddd"""c	chr8:144994114-144994365(-)$1	251	36	44	16.1568
ee####dd	chr16:89348264-89348494(-)$1	230	41	49	15.6666
3hhhhhhh	chr22:50277366-50277658(+)$1	292	78	86	16.1568
dddd]ccc	chr16:89348367-89348659(-)$1	292	206	214	15.6666
DKKBB:ff	chr19:55558713-55558934(+)$1	221	54	62	16.8431
CCC::DDD	chr10:75551927-75552238(+)$1	311	71	79	15.4705
^^^^^^^d	chr16:89349564-89349798(-)$1	234	103	111	15.8627
ffffoooo	chr22:36688063-36688341(-)$1	278	135	143	15.1764
:::::fff	chr11:62299445-62299694(-)$1	249	95	103	15.8627
22ddddee	chr8:94745831-94746079(-)$1	248	111	119	15.1764
bb&&&&&&	chr8:144996917-144997168(-)$1	251	73	81	19.5882
cc"""a[e	chr11:62289982-62290225(-)$1	243	175	183	16.8431
cc"""ddd	chr11:62299041-62299279(-)$1	238	64	72	15.8627
ee::::::	chr19:50354091-50354338(-)$1	247	137	145	15.7647
||||||CC	chr11:62288115-62288367(-)$1	252	192	200	15.1764
ggnnnnng	chr11:61897880-61898135(+)$1	255	125	133	19.5882
::::::::	chr1:16255531-16255795(+)$1	264	59	67	16.8431
eeeee::b	chr6:132021702-132021959(+)$1	257	125	133	15.1764
nbb333ff	chr11:62297859-62298103(-)$1	244	129	137	15.4705
cc333ddd	chr11:62296569-62296817(-)$1	248	107	115	15.8627
bb4444hh	chr16:89351329-89351586(-)$1	257	160	168	15.4705
YYGGGGGG	chr12:132425786-132426051(+)$1	265	255	263	19.5882
cc"""a[e	chr11:62292333-62292569(-)$1	236	173	181	16.8431
qqqqqccc	chr5:139493785-139494059(+)$1	274	214	222	14.7843
nbb333ff	chr11:62297942-62298194(-)$1	252	220	228	15.4705
edddd!!c	chr8:144994064-144994289(-)$1	225	143	151	16.8431
"""aqqqq	chr16:87735206-87735481(-)$1	275	86	94	16.8431
ccvvvvvv	chr16:89349356-89349678(-)$1	322	253	261	19.5882
2a4444cc	chr21:47663450-47663764(+)$1	314	261	269	16.8431
cc55555d	chr8:94748322-94748567(-)$1	245	165	173	15.7647
dd22a::F	chr19:5719804-5720060(-)$1	256	16	24	15.6666
55555a]h	chr19:55558602-55558857(+)$1	255	165	173	16.8431
hhhhh:::	chr8:144999257-144999520(-)$1	263	211	219	16.1568
ccc!!a%%	chr1:16256263-16256472(+)$1	209	11	19	15.3725
22ffffff	chr16:89351554-89351809(-)$1	255	200	208	19.5882
CCCEEEEE	chr1:1691148-1691392(-)$1	244	207	215	16.1568
CC?????D	chr3:49050532-49050811(+)$1	279	252	260	15.4705
cc333ddd	chr11:62296654-62296913(-)$1	259	203	211	15.8627

#DB
((.(....	chr8:144999420-144999672(-)$1	1	51	59	16.1568
((((.((.	chr1:144931228-144931488(-)$1	1	31	39	16.8431
).))).((	chr8:144940371-144940699(-)$1	1	252	260	19.5882
))))..((	chr11:62287329-62287587(-)$1	1	81	89	16.8431
)).))..)	chr13:108518612-108518877(-)$1	1	223	231	15.6666
((....((	chr14:102452439-102452736(+)$1	1	159	167	15.6666
(.....((	chr12:6707358-6707602(-)$1	1	34	42	15.7647
.....)))	chr9:134350850-134351119(+)$1	1	112	120	15.8627
.(((.(((	chr11:62296487-62296721(-)$1	1	11	19	15.8627
.....)))	chr11:71724678-71724924(-)$1	1	101	109	16.8431
.).)..))	chr8:41525732-41526003(-)$1	1	182	190	16.1568
(((.....	chr4:13600891-13601183(-)$1	1	34	42	15.7647
((((..((	chr8:144943804-144944041(-)$1	1	114	122	16.1568
((((...(	chr8:144994114-144994365(-)$1	1	36	44	16.1568
((....((	chr16:89348264-89348494(-)$1	1	41	49	15.6666
.)))))))	chr22:50277366-50277658(+)$1	1	78	86	16.1568
)))).)))	chr16:89348367-89348659(-)$1	1	206	214	15.6666
(..((.((	chr19:55558713-55558934(+)$1	1	54	62	16.8431
)))..(((	chr10:75551927-75552238(+)$1	1	71	79	15.4705
.......)	chr16:89349564-89349798(-)$1	1	103	111	15.8627
((((....	chr22:36688063-36688341(-)$1	1	135	143	15.1764
.....(((	chr11:62299445-62299694(-)$1	1	95	103	15.8627
..))))))	chr8:94745831-94746079(-)$1	1	111	119	15.1764
((......	chr8:144996917-144997168(-)$1	1	73	81	19.5882
((...(.(	chr11:62289982-62290225(-)$1	1	175	183	16.8431
((...(((	chr11:62299041-62299279(-)$1	1	64	72	15.8627
))......	chr19:50354091-50354338(-)$1	1	137	145	15.7647
......))	chr11:62288115-62288367(-)$1	1	192	200	15.1764
((.....)	chr11:61897880-61898135(+)$1	1	125	133	19.5882
........	chr1:16255531-16255795(+)$1	1	59	67	16.8431
)))))..(	chr6:132021702-132021959(+)$1	1	125	133	15.1764
.))...))	chr11:62297859-62298103(-)$1	1	129	137	15.4705
))...)))	chr11:62296569-62296817(-)$1	1	107	115	15.8627
))....))	chr16:89351329-89351586(-)$1	1	160	168	15.4705
..))))))	chr12:132425786-132426051(+)$1	1	255	263	19.5882
((...(.(	chr11:62292333-62292569(-)$1	1	173	181	16.8431
.....)))	chr5:139493785-139494059(+)$1	1	214	222	14.7843
.))...))	chr11:62297942-62298194(-)$1	1	220	228	15.4705
)((((..(	chr8:144994064-144994289(-)$1	1	143	151	16.8431
...(....	chr16:87735206-87735481(-)$1	1	86	94	16.8431
((......	chr16:89349356-89349678(-)$1	1	253	261	19.5882
.)....))	chr21:47663450-47663764(+)$1	1	261	269	16.8431
)).....)	chr8:94748322-94748567(-)$1	1	165	173	15.7647
))..)..(	chr19:5719804-5720060(-)$1	1	16	24	15.6666
.....).)	chr19:55558602-55558857(+)$1	1	165	173	16.8431
)))))...	chr8:144999257-144999520(-)$1	1	211	219	16.1568
(((..(..	chr1:16256263-16256472(+)$1	1	11	19	15.3725
..))))))	chr16:89351554-89351809(-)$1	1	200	208	19.5882
))))))))	chr1:1691148-1691392(-)$1	1	207	215	16.1568
)).....)	chr3:49050532-49050811(+)$1	1	252	260	15.4705
))...)))	chr11:62296654-62296913(-)$1	1	203	211	15.8627

#PSSM
G : 0.92	C : 0.05	g : 0.01	
C : 0.74	G : 0.21	c : 0.01	A : 0.01	
A : 0.86	U : 0.07	a : 0.03	G : 0.01	
G : 0.96	g : 0.03	
A : 0.80	G : 0.13	c : 0.01	C : 0.01	a : 0.01	
A : 0.82	G : 0.11	a : 0.03	U : 0.01	
G : 0.94	g : 0.03	C : 0.01	
G : 0.80	A : 0.07	C : 0.05	g : 0.03	U : 0.01	

#score	836.5490196078437
#seq	51
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_CDS_m3_run1.nuc.txt

#NT
UGAUUUCA	chr3:99567658-99567918(+)$1	260	103	111	14.5882
UCAUUUCU	chr2:179430836-179431098(+)$1	262	52	60	14.2941
UGAUUUCU	chr3:99567343-99567595(+)$1	252	100	108	18.3137
UGAUUUCU	chr7:141478527-141478762(+)$1	235	173	181	18.3137
UGUUUUCG	chr2:179432900-179433152(+)$1	252	50	58	13.9019
UGAUUGCU	chr2:186654581-186654815(-)$1	234	224	232	14.0000
UGUUUACU	chrX:71426744-71426980(+)$1	236	7	15	13.6078
UGGUUUCU	chr2:179427145-179427421(+)$1	276	52	60	16.2549
UGAUUUCA	chr2:179422681-179422954(+)$1	273	47	55	14.5882
UGGUUUCU	chr2:179431734-179431942(+)$1	208	136	144	16.2549
AGAUUUCU	chr2:179431166-179431420(+)$1	254	113	121	13.8039
ugcuuucu	chr7:141464606-141464865(+)$1	259	95	103	16.3529
UUAUUUCU	chr19:37825980-37826230(+)$1	250	68	76	14.2941
UAAUUUCU	chr2:179416841-179417100(+)$1	259	13	21	14.0980
GGUUUUCU	chr2:179426268-179426528(+)$1	260	190	198	13.3137
AGAUUUCU	chr2:179431265-179431526(+)$1	261	14	22	13.8039
UGAUUUCA	chr3:99567557-99567838(+)$1	281	204	212	14.5882
UGUUUUCU	chr3:99568181-99568420(+)$1	239	72	80	17.9215
UGUUUUCA	chr2:179429669-179429932(+)$1	263	35	43	14.1960
uguuuucc	chr18:77690179-77690416(-)$1	237	30	38	14.1960
UGGUUUCU	chr6:132031144-132031398(+)$1	254	3	11	16.2549
UGAUUUCU	chr3:99569627-99569901(+)$1	274	258	266	18.3137
UGUUUUCU	chr2:179428807-179429090(+)$1	283	55	63	17.9215
UGAUUUCU	chr2:186658456-186658721(-)$1	265	192	200	18.3137
UGAUAUCU	chr20:37125767-37126104(+)$1	337	205	213	13.6078
UGUUUUCU	chr2:186658814-186659041(-)$1	227	19	27	17.9215
UUAUUUCU	chr2:186655355-186655601(-)$1	246	227	235	14.2941
ugcuuucu	chr7:141464458-141464712(+)$1	254	243	251	16.3529
UGUAUUCU	chr2:179424783-179425026(+)$1	243	4	12	13.2156
UGUUUUCU	chr2:179438959-179439218(+)$1	259	183	191	17.9215
UCUUUUCU	chr2:179432968-179433209(+)$1	241	97	105	13.9019
UGACUUCU	chr7:141478740-141478990(+)$1	250	125	133	13.6078
UGAUUCCU	chr2:186657883-186658162(-)$1	279	256	264	13.9019
UGAUUUCU	chr2:186655222-186655493(-)$1	271	140	148	18.3137
UGAUUUCU	chr7:141478447-141478727(+)$1	280	253	261	18.3137
UGCUUUCU	chr18:32918884-32919129(-)$1	245	38	46	16.3529
UGCUUUCC	chr2:179427860-179428174(+)$1	314	109	117	12.6274
UGAUCUCU	chr10:71914713-71914991(-)$1	278	11	19	13.6078
UGAUUGCU	chr2:179428326-179428564(+)$1	238	88	96	14.0000
UCAUUUCU	chr2:179424328-179424551(+)$1	223	74	82	14.2941
UGAUUUCU	chr2:179425562-179425812(+)$1	250	77	85	18.3137
UUAUUUCU	chr2:179438544-179438817(+)$1	273	79	87	14.2941
UGUUUUGU	chr22:51162450-51162706(+)$1	256	24	32	13.4117
UGUUUUCU	chr2:179428251-179428494(+)$1	243	38	46	17.9215
UGUUUUUU	chr2:186659698-186659961(-)$1	263	58	66	13.3137
UGUUUUCC	chr2:186660776-186661060(-)$1	284	7	15	14.1960
UGUUUACU	chr1:174417668-174417946(+)$1	278	205	213	13.6078
UGUUUUCC	chr3:99568744-99569040(+)$1	296	257	265	14.1960
UGUUUUGU	chr6:132031092-132031344(+)$1	252	21	29	13.4117
UGUUUUCU	chr2:186658931-186659169(-)$1	238	147	155	17.9215

#otherMatches

#Struct PSSM
fff^^^^^	chr3:99568250-99568528(+)$1	278	3	11	17.9215
oooooodd	chr3:99567658-99567918(+)$1	260	103	111	14.5882
::::::ff	chr2:179430836-179431098(+)$1	262	52	60	14.2941
ddddccc[	chr3:99567343-99567595(+)$1	252	100	108	18.3137
2cccgggg	chr7:141478527-141478762(+)$1	235	173	181	18.3137
ddddllld	chr2:179432900-179433152(+)$1	252	50	58	13.9019
nnnndddd	chr2:186654581-186654815(-)$1	234	224	232	14.0000
:GGGGGGG	chrX:71426744-71426980(+)$1	236	7	15	13.6078
dddd::ii	chr2:179427145-179427421(+)$1	276	52	60	16.2549
bb::::::	chr2:179422681-179422954(+)$1	273	47	55	14.5882
!!======	chr2:179431734-179431942(+)$1	208	136	144	16.2549
=====::f	chr2:179431166-179431420(+)$1	254	113	121	13.8039
cccsssss	chr7:141464606-141464865(+)$1	259	95	103	16.3529
>>>>>>>>	chr19:37825980-37826230(+)$1	250	68	76	14.2941
dd::::::	chr2:179416841-179417100(+)$1	259	13	21	14.0980
ddmmmmdd	chr2:179426268-179426528(+)$1	260	190	198	13.3137
eeee::::	chr2:179431265-179431526(+)$1	261	14	22	13.8039
oooooodd	chr3:99567557-99567838(+)$1	281	204	212	14.5882
^^^^^^^^	chr3:99568181-99568420(+)$1	239	72	80	17.9215
cc22ccc:	chr2:179429669-179429932(+)$1	263	35	43	14.1960
qqqqeeee	chr18:77690179-77690416(-)$1	237	30	38	14.1960
cc[a!!bb	chr6:132031144-132031398(+)$1	254	3	11	16.2549
fffffmmm	chr3:99569627-99569901(+)$1	274	258	266	18.3137
ffff:EEE	chr2:179428807-179429090(+)$1	283	55	63	17.9215
ffff::HH	chr2:186658456-186658721(-)$1	265	192	200	18.3137
C::::::f	chr20:37125767-37126104(+)$1	337	205	213	13.6078
f$$$$$gg	chr2:186658814-186659041(-)$1	227	19	27	17.9215
d::::FFF	chr2:186655355-186655601(-)$1	246	227	235	14.2941
::::::::	chr7:141464458-141464712(+)$1	254	243	251	16.3529
ffffffmm	chr2:179424783-179425026(+)$1	243	4	12	13.2156
cc!!eeee	chr2:179438959-179439218(+)$1	259	183	191	17.9215
7777eeee	chr2:179432968-179433209(+)$1	241	97	105	13.9019
ddd:ffff	chr7:141478740-141478990(+)$1	250	125	133	13.6078
hhhhhh::	chr2:186657883-186658162(-)$1	279	256	264	13.9019
:::fffff	chr2:186655222-186655493(-)$1	271	140	148	18.3137
cccrrrrr	chr7:141478447-141478727(+)$1	280	253	261	18.3137
Ebbqqqqq	chr18:32918884-32919129(-)$1	245	38	46	16.3529
EEEE::::	chr2:179427860-179428174(+)$1	314	109	117	12.6274
mmdddd::	chr10:71914713-71914991(-)$1	278	11	19	13.6078
ee::::dd	chr2:179428326-179428564(+)$1	238	88	96	14.0000
eeeee[gg	chr2:179424328-179424551(+)$1	223	74	82	14.2941
hhh333cc	chr2:179425562-179425812(+)$1	250	77	85	18.3137
::::::::	chr2:179438544-179438817(+)$1	273	79	87	14.2941
========	chr22:51162450-51162706(+)$1	256	24	32	13.4117
::::ffff	chr2:179428251-179428494(+)$1	243	38	46	17.9215
xxxxxxxx	chr2:186659698-186659961(-)$1	263	58	66	13.3137
hhhhhhh#	chr2:186660776-186661060(-)$1	284	7	15	14.1960
::::::::	chr1:174417668-174417946(+)$1	278	205	213	13.6078
eeeee"""	chr3:99568744-99569040(+)$1	296	257	265	14.1960
BB::::::	chr6:132031092-132031344(+)$1	252	21	29	13.4117
ZEEEEEYY	chr2:186658931-186659169(-)$1	238	147	155	17.9215

#DB
(((.....	chr3:99568250-99568528(+)$1	1	3	11	17.9215
......))	chr3:99567658-99567918(+)$1	1	103	111	14.5882
......((	chr2:179430836-179431098(+)$1	1	52	60	14.2941
(((((((.	chr3:99567343-99567595(+)$1	1	100	108	18.3137
.)))))))	chr7:141478527-141478762(+)$1	1	173	181	18.3137
((((...)	chr2:179432900-179433152(+)$1	1	50	58	13.9019
....))))	chr2:186654581-186654815(-)$1	1	224	232	14.0000
.(((((((	chrX:71426744-71426980(+)$1	1	7	15	13.6078
))))..((	chr2:179427145-179427421(+)$1	1	52	60	16.2549
))......	chr2:179422681-179422954(+)$1	1	47	55	14.5882
..((((((	chr2:179431734-179431942(+)$1	1	136	144	16.2549
)))))..(	chr2:179431166-179431420(+)$1	1	113	121	13.8039
(((.....	chr7:141464606-141464865(+)$1	1	95	103	16.3529
........	chr19:37825980-37826230(+)$1	1	68	76	14.2941
))......	chr2:179416841-179417100(+)$1	1	13	21	14.0980
((....))	chr2:179426268-179426528(+)$1	1	190	198	13.3137
))))....	chr2:179431265-179431526(+)$1	1	14	22	13.8039
......))	chr3:99567557-99567838(+)$1	1	204	212	14.5882
........	chr3:99568181-99568420(+)$1	1	72	80	17.9215
))..))).	chr2:179429669-179429932(+)$1	1	35	43	14.1960
....))))	chr18:77690179-77690416(-)$1	1	30	38	14.1960
((.(..((	chr6:132031144-132031398(+)$1	1	3	11	16.2549
(((((...	chr3:99569627-99569901(+)$1	1	258	266	18.3137
)))).(((	chr2:179428807-179429090(+)$1	1	55	63	17.9215
))))..))	chr2:186658456-186658721(-)$1	1	192	200	18.3137
(......(	chr20:37125767-37126104(+)$1	1	205	213	13.6078
(.....((	chr2:186658814-186659041(-)$1	1	19	27	17.9215
)....)))	chr2:186655355-186655601(-)$1	1	227	235	14.2941
........	chr7:141464458-141464712(+)$1	1	243	251	16.3529
((((((..	chr2:179424783-179425026(+)$1	1	4	12	13.2156
((..((((	chr2:179438959-179439218(+)$1	1	183	191	17.9215
....))))	chr2:179432968-179433209(+)$1	1	97	105	13.9019
))).((((	chr7:141478740-141478990(+)$1	1	125	133	13.6078
))))))..	chr2:186657883-186658162(-)$1	1	256	264	13.9019
...(((((	chr2:186655222-186655493(-)$1	1	140	148	18.3137
(((.....	chr7:141478447-141478727(+)$1	1	253	261	18.3137
(((.....	chr18:32918884-32919129(-)$1	1	38	46	16.3529
((((....	chr2:179427860-179428174(+)$1	1	109	117	12.6274
..))))..	chr10:71914713-71914991(-)$1	1	11	19	13.6078
))....((	chr2:179428326-179428564(+)$1	1	88	96	14.0000
(((((.((	chr2:179424328-179424551(+)$1	1	74	82	14.2941
)))...))	chr2:179425562-179425812(+)$1	1	77	85	18.3137
........	chr2:179438544-179438817(+)$1	1	79	87	14.2941
))))))))	chr22:51162450-51162706(+)$1	1	24	32	13.4117
....((((	chr2:179428251-179428494(+)$1	1	38	46	17.9215
........	chr2:186659698-186659961(-)$1	1	58	66	13.3137
(((((((.	chr2:186660776-186661060(-)$1	1	7	15	14.1960
........	chr1:174417668-174417946(+)$1	1	205	213	13.6078
(((((...	chr3:99568744-99569040(+)$1	1	257	265	14.1960
((......	chr6:132031092-132031344(+)$1	1	21	29	13.4117
.)))))..	chr2:186658931-186659169(-)$1	1	147	155	17.9215

#PSSM
U : 0.88	u : 0.05	A : 0.03	G : 0.01	
G : 0.80	C : 0.05	g : 0.05	U : 0.05	A : 0.01	
A : 0.47	U : 0.37	G : 0.05	c : 0.03	C : 0.03	u : 0.01	
U : 0.90	u : 0.05	A : 0.01	C : 0.01	
U : 0.90	u : 0.05	A : 0.01	C : 0.01	
U : 0.84	u : 0.05	G : 0.03	A : 0.03	C : 0.01	
C : 0.88	c : 0.05	G : 0.03	U : 0.01	
U : 0.78	A : 0.07	C : 0.05	u : 0.03	G : 0.01	c : 0.01	

#score	782.2352941176475
#seq	51
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_CDS_m1_run2.nuc.txt

#NT
CCCU	chr20:61471821-61472072(+)$1	251	19	23	11.9999
CCCU	chr3:184101265-184101488(+)$1	223	21	25	11.9999
CCCU	chr11:725710-725918(+)$1	208	80	84	11.9999
CCCU	chr3:52326320-52326563(+)$1	243	85	89	11.9999
CCCU	chr7:99956982-99957260(+)$1	278	270	274	11.9999
CCCU	chr16:135514-135863(+)$1	349	16	20	11.9999
CCCU	chr3:132277809-132278028(-)$1	219	67	71	11.9999
CCCU	chr14:24108439-24108651(+)$1	212	192	196	11.9999
CCCU	chr6:31919096-31919322(+)$1	226	13	17	11.9999
CCCU	chr17:80400001-80400294(+)$1	293	38	42	11.9999
CCCU	chr9:111653465-111653747(-)$1	282	196	200	11.9999
CCCU	chr9:117063259-117063487(+)$1	228	18	22	11.9999
CCCU	chr19:36290828-36291072(-)$1	244	7	11	11.9999
CCCU	chr17:73227824-73228101(+)$1	277	154	158	11.9999
CCCU	chr17:80400272-80400534(+)$1	262	82	86	11.9999
CCCU	chr14:24029366-24029611(-)$1	245	51	55	11.9999
CCCU	chr19:18545757-18546028(-)$1	271	50	54	11.9999
CCCU	chr16:1818604-1818849(+)$1	245	229	233	11.9999
CCCU	chr21:47558322-47558531(-)$1	209	57	61	11.9999
CCCU	chr9:6604583-6604885(-)$1	302	177	181	11.9999
cccu	chr11:72540245-72540532(+)$1	287	73	77	11.9999
CCCU	chr18:214592-214890(-)$1	298	58	62	11.9999
CCCU	chr17:79974766-79975028(+)$1	262	74	78	11.9999
CCCU	chr11:75147905-75148150(-)$1	245	87	91	11.9999
CCCU	chr3:184100425-184100637(+)$1	212	56	60	11.9999
cccu	chr1:1229156-1229396(-)$1	240	3	7	11.9999
CCCU	chr17:38061577-38061836(-)$1	259	36	40	11.9999
CCCU	chr19:10822874-10823242(+)$1	368	127	131	11.9999
CCCU	chr20:62324127-62324444(+)$1	317	130	134	11.9999
CCCU	chr16:1818179-1818418(+)$1	239	12	16	11.9999
CCCU	chr14:21464842-21465094(+)$1	252	192	196	11.9999
CCCU	chr9:123151921-123152171(-)$1	250	8	12	11.9999
CCCU	chr17:46058761-46059019(+)$1	258	7	11	11.9999
CCCU	chr19:39959309-39959586(+)$1	277	52	56	11.9999
CCCU	chr9:117046920-117047157(+)$1	237	60	64	11.9999
CCCU	chr6:31931207-31931436(+)$1	229	35	39	11.9999
CCCU	chr17:48551021-48551268(+)$1	247	224	228	11.9999
CCCU	chr12:110811927-110812228(-)$1	301	84	88	11.9999
CCCU	chr9:117053091-117053297(+)$1	206	21	25	11.9999
CCCU	chr2:219562518-219562819(+)$1	301	79	83	11.9999
CCCU	chr20:60888044-60888272(-)$1	228	171	175	11.9999
CCCU	chr16:23403673-23403942(-)$1	269	195	199	11.9999
CCCU	chr9:117072846-117073098(+)$1	252	68	72	11.9999
CCCU	chr20:62326187-62326418(+)$1	231	5	9	11.9999
CCCU	chr20:60889392-60889596(-)$1	204	52	56	11.9999
CCCU	chr2:74689767-74690003(-)$1	236	61	65	11.9999
CCCU	chr20:2638996-2639264(-)$1	268	178	182	11.9999
CCCU	chr12:56631359-56631691(+)$1	332	19	23	11.9999
CCCU	chr3:184106289-184106525(+)$1	236	73	77	11.9999
CCCU	chr20:60884728-60884978(-)$1	250	74	78	11.9999
CCCU	chr20:62571242-62571508(-)$1	266	21	25	11.9999
CCCU	chr20:62326640-62326953(+)$1	313	13	17	11.9999
CCCU	chr9:117072728-117072934(+)$1	206	186	190	11.9999
CCCU	chr16:67862286-67862513(-)$1	227	198	202	11.9999
CCCU	chr20:43567678-43567956(+)$1	278	143	147	11.9999
CCCU	chr12:6666419-6666695(-)$1	276	251	255	11.9999
CCCU	chr6:109766299-109766574(-)$1	275	74	78	11.9999
CCCU	chr6:31639875-31640111(+)$1	236	5	9	11.9999
CCCU	chr16:2580908-2581169(+)$1	261	240	244	11.9999
CCCU	chr9:117053060-117053286(+)$1	226	3	7	11.9999
CCCU	chr8:145540664-145540923(-)$1	259	50	54	11.9999
CCCU	chr17:7127866-7128102(+)$1	236	30	34	11.9999
CCCU	chr14:24032490-24032695(-)$1	205	84	88	11.9999
CCCU	chr17:38061999-38062260(-)$1	261	16	20	11.9999
CCCU	chr9:117050921-117051132(+)$1	211	62	66	11.9999
CCCU	chr17:80016301-80016554(-)$1	253	44	48	11.9999
CCCU	chr16:16243871-16244116(-)$1	245	3	7	11.9999
cccu	chr9:117063496-117063699(+)$1	203	36	40	11.9999
CCCU	chr8:144644133-144644397(+)$1	264	2	6	11.9999
CCCU	chr21:46924949-46925153(+)$1	204	184	188	11.9999
CCCU	chr3:49722387-49722611(-)$1	224	0	4	11.9999
CCCU	chr3:184100704-184100930(+)$1	226	82	86	11.9999
CCCU	chr16:3023138-3023415(+)$1	277	146	150	11.9999
CCCU	chr3:48448134-48448342(-)$1	208	20	24	11.9999
CCCU	chr2:198257595-198257806(-)$1	211	52	56	11.9999
CCCU	chr3:48602263-48602514(-)$1	251	25	29	11.9999
CCCU	chr6:109765307-109765562(-)$1	255	101	105	11.9999
CCCU	chr17:48631511-48631740(+)$1	229	19	23	11.9999
CCCU	chr9:117072788-117073036(+)$1	248	126	130	11.9999
CCCU	chr1:40766767-40767030(-)$1	263	229	233	11.9999
CCCU	chr12:30862865-30863199(-)$1	334	6	10	11.9999
CCCU	chr22:51018696-51018935(-)$1	239	82	86	11.9999
CCCU	chr19:2099092-2099421(+)$1	329	12	16	11.9999
CCCU	chr16:84213203-84213474(-)$1	271	37	41	11.9999
CCCU	chr3:184106583-184106810(+)$1	227	23	27	11.9999
cccu	chr3:184107054-184107269(+)$1	215	25	29	11.9999

#otherMatches

#Struct PSSM
tttt	chr10:101594037-101594240(+)$1	203	121	125	11.9999
:DDD	chr20:61471821-61472072(+)$1	251	19	23	11.9999
FFFF	chr3:184101265-184101488(+)$1	223	21	25	11.9999
ff[c	chr11:725710-725918(+)$1	208	80	84	11.9999
CBB{	chr3:52326320-52326563(+)$1	243	85	89	11.9999
GGGG	chr7:99956982-99957260(+)$1	278	270	274	11.9999
D{CC	chr16:135514-135863(+)$1	349	16	20	11.9999
oood	chr3:132277809-132278028(-)$1	219	67	71	11.9999
eeee	chr14:24108439-24108651(+)$1	212	192	196	11.9999
::::	chr6:31919096-31919322(+)$1	226	13	17	11.9999
ddd:	chr17:80400001-80400294(+)$1	293	38	42	11.9999
:::e	chr9:111653465-111653747(-)$1	282	196	200	11.9999
QQQQ	chr9:117063259-117063487(+)$1	228	18	22	11.9999
GGGG	chr19:36290828-36291072(-)$1	244	7	11	11.9999
bb]c	chr17:73227824-73228101(+)$1	277	154	158	11.9999
ddd3	chr17:80400272-80400534(+)$1	262	82	86	11.9999
dddd	chr14:24029366-24029611(-)$1	245	51	55	11.9999
LGGG	chr19:18545757-18546028(-)$1	271	50	54	11.9999
EEEE	chr16:1818604-1818849(+)$1	245	229	233	11.9999
[bbm	chr21:47558322-47558531(-)$1	209	57	61	11.9999
ddd[	chr9:6604583-6604885(-)$1	302	177	181	11.9999
2ddd	chr11:72540245-72540532(+)$1	287	73	77	11.9999
GGGG	chr18:214592-214890(-)$1	298	58	62	11.9999
qqqq	chr17:79974766-79975028(+)$1	262	74	78	11.9999
DDDD	chr11:75147905-75148150(-)$1	245	87	91	11.9999
bbcc	chr3:184100425-184100637(+)$1	212	56	60	11.9999
FFFF	chr1:1229156-1229396(-)$1	240	3	7	11.9999
BBEE	chr17:38061577-38061836(-)$1	259	36	40	11.9999
cccc	chr19:10822874-10823242(+)$1	368	127	131	11.9999
ddII	chr20:62324127-62324444(+)$1	317	130	134	11.9999
cccE	chr16:1818179-1818418(+)$1	239	12	16	11.9999
nnnf	chr14:21464842-21465094(+)$1	252	192	196	11.9999
gggg	chr9:123151921-123152171(-)$1	250	8	12	11.9999
::HH	chr17:46058761-46059019(+)$1	258	7	11	11.9999
3ddd	chr19:39959309-39959586(+)$1	277	52	56	11.9999
::::	chr9:117046920-117047157(+)$1	237	60	64	11.9999
eeee	chr6:31931207-31931436(+)$1	229	35	39	11.9999
ccbb	chr17:48551021-48551268(+)$1	247	224	228	11.9999
gggg	chr12:110811927-110812228(-)$1	301	84	88	11.9999
CCC:	chr9:117053091-117053297(+)$1	206	21	25	11.9999
FFFF	chr2:219562518-219562819(+)$1	301	79	83	11.9999
pppc	chr20:60888044-60888272(-)$1	228	171	175	11.9999
d333	chr16:23403673-23403942(-)$1	269	195	199	11.9999
GGGG	chr9:117072846-117073098(+)$1	252	68	72	11.9999
FFFF	chr20:62326187-62326418(+)$1	231	5	9	11.9999
bbb2	chr20:60889392-60889596(-)$1	204	52	56	11.9999
mddd	chr2:74689767-74690003(-)$1	236	61	65	11.9999
YYFF	chr20:2638996-2639264(-)$1	268	178	182	11.9999
FFFF	chr12:56631359-56631691(+)$1	332	19	23	11.9999
B{CC	chr3:184106289-184106525(+)$1	236	73	77	11.9999
cfff	chr20:60884728-60884978(-)$1	250	74	78	11.9999
ee[d	chr20:62571242-62571508(-)$1	266	21	25	11.9999
FFKK	chr20:62326640-62326953(+)$1	313	13	17	11.9999
eeee	chr9:117072728-117072934(+)$1	206	186	190	11.9999
^^^^	chr16:67862286-67862513(-)$1	227	198	202	11.9999
ee::	chr20:43567678-43567956(+)$1	278	143	147	11.9999
GGGG	chr12:6666419-6666695(-)$1	276	251	255	11.9999
uuuu	chr6:109766299-109766574(-)$1	275	74	78	11.9999
::::	chr6:31639875-31640111(+)$1	236	5	9	11.9999
c]dd	chr16:2580908-2581169(+)$1	261	240	244	11.9999
::::	chr9:117053060-117053286(+)$1	226	3	7	11.9999
dddd	chr8:145540664-145540923(-)$1	259	50	54	11.9999
LCCC	chr17:7127866-7128102(+)$1	236	30	34	11.9999
[eee	chr14:24032490-24032695(-)$1	205	84	88	11.9999
GGGG	chr17:38061999-38062260(-)$1	261	16	20	11.9999
eebb	chr9:117050921-117051132(+)$1	211	62	66	11.9999
nnnn	chr17:80016301-80016554(-)$1	253	44	48	11.9999
dddd	chr16:16243871-16244116(-)$1	245	3	7	11.9999
IIII	chr9:117063496-117063699(+)$1	203	36	40	11.9999
ffff	chr8:144644133-144644397(+)$1	264	2	6	11.9999
]ddd	chr21:46924949-46925153(+)$1	204	184	188	11.9999
gggg	chr3:49722387-49722611(-)$1	224	0	4	11.9999
BBDD	chr3:184100704-184100930(+)$1	226	82	86	11.9999
hhhh	chr16:3023138-3023415(+)$1	277	146	150	11.9999
ee[b	chr3:48448134-48448342(-)$1	208	20	24	11.9999
lddd	chr2:198257595-198257806(-)$1	211	52	56	11.9999
hhhh	chr3:48602263-48602514(-)$1	251	25	29	11.9999
999e	chr6:109765307-109765562(-)$1	255	101	105	11.9999
GGG:	chr17:48631511-48631740(+)$1	229	19	23	11.9999
eeee	chr9:117072788-117073036(+)$1	248	126	130	11.9999
EEEE	chr1:40766767-40767030(-)$1	263	229	233	11.9999
FFFF	chr12:30862865-30863199(-)$1	334	6	10	11.9999
3ccc	chr22:51018696-51018935(-)$1	239	82	86	11.9999
CCC{	chr19:2099092-2099421(+)$1	329	12	16	11.9999
gg""	chr16:84213203-84213474(-)$1	271	37	41	11.9999
gccc	chr3:184106583-184106810(+)$1	227	23	27	11.9999
gggg	chr3:184107054-184107269(+)$1	215	25	29	11.9999

#DB
....	chr10:101594037-101594240(+)$1	1	121	125	11.9999
.(((	chr20:61471821-61472072(+)$1	1	19	23	11.9999
((((	chr3:184101265-184101488(+)$1	1	21	25	11.9999
((.(	chr11:725710-725918(+)$1	1	80	84	11.9999
(((.	chr3:52326320-52326563(+)$1	1	85	89	11.9999
))))	chr7:99956982-99957260(+)$1	1	270	274	11.9999
(.((	chr16:135514-135863(+)$1	1	16	20	11.9999
...)	chr3:132277809-132278028(-)$1	1	67	71	11.9999
))))	chr14:24108439-24108651(+)$1	1	192	196	11.9999
....	chr6:31919096-31919322(+)$1	1	13	17	11.9999
))).	chr17:80400001-80400294(+)$1	1	38	42	11.9999
...(	chr9:111653465-111653747(-)$1	1	196	200	11.9999
....	chr9:117063259-117063487(+)$1	1	18	22	11.9999
((((	chr19:36290828-36291072(-)$1	1	7	11	11.9999
)).)	chr17:73227824-73228101(+)$1	1	154	158	11.9999
))).	chr17:80400272-80400534(+)$1	1	82	86	11.9999
))))	chr14:24029366-24029611(-)$1	1	51	55	11.9999
.(((	chr19:18545757-18546028(-)$1	1	50	54	11.9999
))))	chr16:1818604-1818849(+)$1	1	229	233	11.9999
.((.	chr21:47558322-47558531(-)$1	1	57	61	11.9999
(((.	chr9:6604583-6604885(-)$1	1	177	181	11.9999
.)))	chr11:72540245-72540532(+)$1	1	73	77	11.9999
((((	chr18:214592-214890(-)$1	1	58	62	11.9999
....	chr17:79974766-79975028(+)$1	1	74	78	11.9999
))))	chr11:75147905-75148150(-)$1	1	87	91	11.9999
((((	chr3:184100425-184100637(+)$1	1	56	60	11.9999
((((	chr1:1229156-1229396(-)$1	1	3	7	11.9999
((((	chr17:38061577-38061836(-)$1	1	36	40	11.9999
))))	chr19:10822874-10823242(+)$1	1	127	131	11.9999
))))	chr20:62324127-62324444(+)$1	1	130	134	11.9999
)))(	chr16:1818179-1818418(+)$1	1	12	16	11.9999
...)	chr14:21464842-21465094(+)$1	1	192	196	11.9999
((((	chr9:123151921-123152171(-)$1	1	8	12	11.9999
..((	chr17:46058761-46059019(+)$1	1	7	11	11.9999
.)))	chr19:39959309-39959586(+)$1	1	52	56	11.9999
....	chr9:117046920-117047157(+)$1	1	60	64	11.9999
((((	chr6:31931207-31931436(+)$1	1	35	39	11.9999
((((	chr17:48551021-48551268(+)$1	1	224	228	11.9999
((((	chr12:110811927-110812228(-)$1	1	84	88	11.9999
(((.	chr9:117053091-117053297(+)$1	1	21	25	11.9999
((((	chr2:219562518-219562819(+)$1	1	79	83	11.9999
...)	chr20:60888044-60888272(-)$1	1	171	175	11.9999
)...	chr16:23403673-23403942(-)$1	1	195	199	11.9999
((((	chr9:117072846-117073098(+)$1	1	68	72	11.9999
((((	chr20:62326187-62326418(+)$1	1	5	9	11.9999
))).	chr20:60889392-60889596(-)$1	1	52	56	11.9999
.)))	chr2:74689767-74690003(-)$1	1	61	65	11.9999
..))	chr20:2638996-2639264(-)$1	1	178	182	11.9999
((((	chr12:56631359-56631691(+)$1	1	19	23	11.9999
(.((	chr3:184106289-184106525(+)$1	1	73	77	11.9999
))))	chr20:60884728-60884978(-)$1	1	74	78	11.9999
((.(	chr20:62571242-62571508(-)$1	1	21	25	11.9999
((..	chr20:62326640-62326953(+)$1	1	13	17	11.9999
((((	chr9:117072728-117072934(+)$1	1	186	190	11.9999
....	chr16:67862286-67862513(-)$1	1	198	202	11.9999
))..	chr20:43567678-43567956(+)$1	1	143	147	11.9999
))))	chr12:6666419-6666695(-)$1	1	251	255	11.9999
....	chr6:109766299-109766574(-)$1	1	74	78	11.9999
....	chr6:31639875-31640111(+)$1	1	5	9	11.9999
).))	chr16:2580908-2581169(+)$1	1	240	244	11.9999
....	chr9:117053060-117053286(+)$1	1	3	7	11.9999
((((	chr8:145540664-145540923(-)$1	1	50	54	11.9999
.(((	chr17:7127866-7128102(+)$1	1	30	34	11.9999
.(((	chr14:24032490-24032695(-)$1	1	84	88	11.9999
((((	chr17:38061999-38062260(-)$1	1	16	20	11.9999
))))	chr9:117050921-117051132(+)$1	1	62	66	11.9999
....	chr17:80016301-80016554(-)$1	1	44	48	11.9999
((((	chr16:16243871-16244116(-)$1	1	3	7	11.9999
((((	chr9:117063496-117063699(+)$1	1	36	40	11.9999
((((	chr8:144644133-144644397(+)$1	1	2	6	11.9999
.)))	chr21:46924949-46925153(+)$1	1	184	188	11.9999
((((	chr3:49722387-49722611(-)$1	1	0	4	11.9999
((((	chr3:184100704-184100930(+)$1	1	82	86	11.9999
((((	chr16:3023138-3023415(+)$1	1	146	150	11.9999
((.(	chr3:48448134-48448342(-)$1	1	20	24	11.9999
.)))	chr2:198257595-198257806(-)$1	1	52	56	11.9999
))))	chr3:48602263-48602514(-)$1	1	25	29	11.9999
...)	chr6:109765307-109765562(-)$1	1	101	105	11.9999
(((.	chr17:48631511-48631740(+)$1	1	19	23	11.9999
((((	chr9:117072788-117073036(+)$1	1	126	130	11.9999
))))	chr1:40766767-40767030(-)$1	1	229	233	11.9999
((((	chr12:30862865-30863199(-)$1	1	6	10	11.9999
.)))	chr22:51018696-51018935(-)$1	1	82	86	11.9999
(((.	chr19:2099092-2099421(+)$1	1	12	16	11.9999
((..	chr16:84213203-84213474(-)$1	1	37	41	11.9999
))))	chr3:184106583-184106810(+)$1	1	23	27	11.9999
))))	chr3:184107054-184107269(+)$1	1	25	29	11.9999

#PSSM
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	

#score	1043.9999999999998
#seq	87
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_transcript_m3_run2.nuc.txt

#NT
ucccccugcacu	chr19:17451503-17451856(+)$1	353	129	141	17.3461
UGCCUCUGUCCC	chr17:27072776-27073035(+)$1	259	96	108	15.7115
uuccucugcccc	chrX:47032822-47033072(+)$1	250	124	136	18.8846
uccuccugcccu	chr22:20850446-20850876(+)$1	430	14	26	18.3076
uccaccggcccc	chr20:60895987-60896281(-)$1	294	51	63	18.2115
UCCCACAGCCCC	chr19:55852013-55852274(+)$1	261	190	202	18.7884
UCCCUCGUCCCC	chr9:127631726-127632026(+)$1	300	179	191	16.0000
UCCCCUAGCCCC	chr12:57920657-57920907(+)$1	250	25	37	18.4038
UGCCCCAGCCCC	chr16:85835630-85835939(+)$1	309	134	146	19.3653
UCCCCCCUCCCC	chr17:47132622-47132943(+)$1	321	173	185	19.7500
UCCCUCUGCUCC	chr16:2869453-2869774(+)$1	321	124	136	17.5384
UCUCCCUGUCCC	chr17:54972035-54972322(-)$1	287	43	55	19.5576
UCUCCCUGUCCC	chr19:39389065-39389327(-)$1	262	12	24	19.5576
UCCCCCUACGCC	chr19:3630611-3630898(-)$1	287	240	252	18.4038
UCCCUCUGCCCC	chr7:100064931-100065221(-)$1	290	95	107	22.0576
UACCCCUCUCCC	chr19:6531948-6532231(+)$1	283	206	218	16.2884
CCCCCCAGCCCC	chr7:100271510-100271767(+)$1	257	66	78	18.8846
UCCCCCUGUCCC	chr19:50435809-50436134(+)$1	325	112	124	22.6346
ucccucuucccu	chr12:6957456-6957752(-)$1	296	76	88	15.5192
gcccccagcccc	chr9:35829384-35829669(+)$1	285	110	122	18.5961
UCCCACUGUCCC	chr6:31472787-31473109(+)$1	322	248	260	18.6923
UCCCCUUUCCCC	chr6:36885697-36885986(+)$1	289	110	122	18.5000
uccccuugcccc	chr13:113537218-113537537(+)$1	319	148	160	21.2884
uucuccugcccc	chr8:91021323-91021648(+)$1	325	62	74	18.8846
UCUCCCGGCCCC	chr22:50040881-50041210(-)$1	329	192	204	19.2692
ucccccugcccc	chr7:916991-917316(+)$1	325	2	14	25.6153
ucccccugcccc	chr2:3420572-3420975(+)$1	403	17	29	25.6153
CCACCCUGUCCC	chr19:41113584-41113839(+)$1	255	121	133	15.0384
UCUCCCUCCCCC	chr17:8063180-8063461(-)$1	281	148	160	19.6538
UCUCCCUAUCCC	chrX:153947149-153947444(-)$1	295	103	115	16.7692
UCUCCCUCCCCU	chr17:45884970-45885295(-)$1	325	82	94	15.9038
uccuccuccccc	chr16:85686820-85687059(+)$1	239	11	23	19.1730
UUCUCCUGUCCC	chr11:10828773-10829023(-)$1	250	104	116	15.9038
UCUCCGUGCCCC	chr6:44120015-44120287(+)$1	272	96	108	18.0192
UCACCCUGCCCC	chr7:1533853-1534142(-)$1	289	161	173	21.8653
GCCCCCUGCCCU	chr21:46687028-46687312(-)$1	284	122	134	17.7307
uccuccagcccc	chr19:2329566-2329884(+)$1	318	102	114	19.1730
uccccccacccc	chr7:76189438-76189673(+)$1	235	122	134	19.7500
UCCCCCUACGCC	chr19:3630376-3630675(-)$1	299	17	29	18.4038
ucccgcugccac	chr17:7750908-7751182(+)$1	274	53	65	16.8653
UCCCCCCACCCC	chr7:72416686-72416954(+)$1	268	107	119	19.7500
CUUCCCUGCCCC	chr19:38910484-38910832(-)$1	348	85	97	15.5192
UUCCCCUGGCCU	chr20:61916393-61916673(+)$1	280	69	81	14.8461
UCCCCCUACCCC	chr3:47452099-47452366(+)$1	267	174	186	22.8269
cuccccuucccc	chr19:50154177-50154516(+)$1	339	53	65	15.8076
UCCCCCACCCCC	chr1:2125593-2125860(-)$1	267	84	96	19.8461
UCUCCCUGCCCA	chr22:49967052-49967398(-)$1	346	184	196	18.3076
UCCCCCUUCCUC	chr7:100172207-100172456(-)$1	249	24	36	18.1153
UGCCCCCGCCCC	chr1:11863513-11863916(-)$1	403	215	227	19.1730
ugcuccuguccc	chr1:228400838-228401221(+)$1	383	153	165	15.7115
uacuccugcccc	chr11:45826884-45827246(+)$1	362	97	109	18.5961

#otherMatches

#Struct PSSM
nnnnccc:::::	chr7:100273443-100273715(+)$1	272	47	59	15.2307
###bb!!ddddb	chr19:17451503-17451856(+)$1	353	129	141	17.3461
qqqqqqqeeeee	chr17:27072776-27073035(+)$1	259	96	108	15.7115
{HHHHHHHHQQQ	chrX:47032822-47033072(+)$1	250	124	136	18.8846
::::::::::::	chr22:20850446-20850876(+)$1	430	14	26	18.3076
ooooooccc:::	chr20:60895987-60896281(-)$1	294	51	63	18.2115
(a[ffffff$$$	chr19:55852013-55852274(+)$1	261	190	202	18.7884
333ccc::::::	chr9:127631726-127632026(+)$1	300	179	191	16.0000
ggg::::ddddd	chr12:57920657-57920907(+)$1	250	25	37	18.4038
nbb:ddddmmmm	chr16:85835630-85835939(+)$1	309	134	146	19.3653
::::::::::::	chr17:47132622-47132943(+)$1	321	173	185	19.7500
>>>>>>>bb]cc	chr16:2869453-2869774(+)$1	321	124	136	17.5384
wwwwwdddd333	chr17:54972035-54972322(-)$1	287	43	55	19.5576
::::::::::::	chr19:39389065-39389327(-)$1	262	12	24	19.5576
DDD::::::ddd	chr19:3630611-3630898(-)$1	287	240	252	18.4038
22eeeee66666	chr7:100064931-100065221(-)$1	290	95	107	22.0576
e]hhhhhhhh:e	chr19:6531948-6532231(+)$1	283	206	218	16.2884
D:::hhhhhhhh	chr7:100271510-100271767(+)$1	257	66	78	18.8846
::::::CCCLLL	chr19:50435809-50436134(+)$1	325	112	124	22.6346
ff[awwwwwwww	chr12:6957456-6957752(-)$1	296	76	88	15.5192
ffff333bb:::	chr9:35829384-35829669(+)$1	285	110	122	18.5961
^^^^^^^^^^^^	chr6:31472787-31473109(+)$1	322	248	260	18.6923
GGGGG{CCCCCC	chr6:36885697-36885986(+)$1	289	110	122	18.5000
:::::::::::b	chr13:113537218-113537537(+)$1	319	148	160	21.2884
$$ammmma5555	chr8:91021323-91021648(+)$1	325	62	74	18.8846
]ccc22dddd33	chr22:50040881-50041210(-)$1	329	192	204	19.2692
::::::::::::	chr7:916991-917316(+)$1	325	2	14	25.6153
::::::::::::	chr2:3420572-3420975(+)$1	403	17	29	25.6153
:::::FFFFFF@	chr19:41113584-41113839(+)$1	255	121	133	15.0384
++++++++++++	chr17:8063180-8063461(-)$1	281	148	160	19.6538
::::::::::::	chrX:153947149-153947444(-)$1	295	103	115	16.7692
bb22eeeee]ee	chr17:45884970-45885295(-)$1	325	82	94	15.9038
::::::::::::	chr16:85686820-85687059(+)$1	239	11	23	19.1730
2cccaeeeee::	chr11:10828773-10829023(-)$1	250	104	116	15.9038
:::::cccoooo	chr6:44120015-44120287(+)$1	272	96	108	18.0192
22ccc22a22ee	chr7:1533853-1534142(-)$1	289	161	173	21.8653
ff:CCC{CCC::	chr21:46687028-46687312(-)$1	284	122	134	17.7307
::::::cccooo	chr19:2329566-2329884(+)$1	318	102	114	19.1730
vvvvvvvvvvvv	chr7:76189438-76189673(+)$1	235	122	134	19.7500
ddxxxxxxxxxx	chr19:3630376-3630675(-)$1	299	17	29	18.4038
ccc]eeeee>>>	chr17:7750908-7751182(+)$1	274	53	65	16.8653
e22dddd:::::	chr7:72416686-72416954(+)$1	268	107	119	19.7500
eeee]bbbbooo	chr19:38910484-38910832(-)$1	348	85	97	15.5192
:::::dddd[bb	chr20:61916393-61916673(+)$1	280	69	81	14.8461
^^^^^^^^^^^^	chr3:47452099-47452366(+)$1	267	174	186	22.8269
HHHKKEEEEELL	chr19:50154177-50154516(+)$1	339	53	65	15.8076
:::::::::::d	chr1:2125593-2125860(-)$1	267	84	96	19.8461
FZZZCCCeeeee	chr22:49967052-49967398(-)$1	346	184	196	18.3076
pppppddddfff	chr7:100172207-100172456(-)$1	249	24	36	18.1153
:bbmmmmbb:::	chr1:11863513-11863916(-)$1	403	215	227	19.1730
occc::::::::	chr1:228400838-228401221(+)$1	383	153	165	15.7115
JJJJJJJJJJJJ	chr11:45826884-45827246(+)$1	362	97	109	18.5961

#DB
....))).....	chr7:100273443-100273715(+)$1	1	47	59	15.2307
...((..(((((	chr19:17451503-17451856(+)$1	1	129	141	17.3461
.......)))))	chr17:27072776-27073035(+)$1	1	96	108	15.7115
.((((((((...	chrX:47032822-47033072(+)$1	1	124	136	18.8846
............	chr22:20850446-20850876(+)$1	1	14	26	18.3076
......)))...	chr20:60895987-60896281(-)$1	1	51	63	18.2115
.(.((((((...	chr19:55852013-55852274(+)$1	1	190	202	18.7884
...)))......	chr9:127631726-127632026(+)$1	1	179	191	16.0000
)))....(((((	chr12:57920657-57920907(+)$1	1	25	37	18.4038
.)).((((....	chr16:85835630-85835939(+)$1	1	134	146	19.3653
............	chr17:47132622-47132943(+)$1	1	173	185	19.7500
.......)).))	chr16:2869453-2869774(+)$1	1	124	136	17.5384
.....))))...	chr17:54972035-54972322(-)$1	1	43	55	19.5576
............	chr19:39389065-39389327(-)$1	1	12	24	19.5576
)))......(((	chr19:3630611-3630898(-)$1	1	240	252	18.4038
..))))).....	chr7:100064931-100065221(-)$1	1	95	107	22.0576
).)))))))).(	chr19:6531948-6532231(+)$1	1	206	218	16.2884
(...((((((((	chr7:100271510-100271767(+)$1	1	66	78	18.8846
......(((...	chr19:50435809-50436134(+)$1	1	112	124	22.6346
((.(........	chr12:6957456-6957752(-)$1	1	76	88	15.5192
))))...))...	chr9:35829384-35829669(+)$1	1	110	122	18.5961
............	chr6:31472787-31473109(+)$1	1	248	260	18.6923
(((((.((((((	chr6:36885697-36885986(+)$1	1	110	122	18.5000
...........(	chr13:113537218-113537537(+)$1	1	148	160	21.2884
..(....)....	chr8:91021323-91021648(+)$1	1	62	74	18.8846
.)))..))))..	chr22:50040881-50041210(-)$1	1	192	204	19.2692
............	chr7:916991-917316(+)$1	1	2	14	25.6153
............	chr2:3420572-3420975(+)$1	1	17	29	25.6153
.....)))))).	chr19:41113584-41113839(+)$1	1	121	133	15.0384
............	chr17:8063180-8063461(-)$1	1	148	160	19.6538
............	chrX:153947149-153947444(-)$1	1	103	115	16.7692
))..))))).))	chr17:45884970-45885295(-)$1	1	82	94	15.9038
............	chr16:85686820-85687059(+)$1	1	11	23	19.1730
.)))))))))..	chr11:10828773-10829023(-)$1	1	104	116	15.9038
.....(((....	chr6:44120015-44120287(+)$1	1	96	108	18.0192
..)))..)..))	chr7:1533853-1534142(-)$1	1	161	173	21.8653
)).(((.(((..	chr21:46687028-46687312(-)$1	1	122	134	17.7307
......(((...	chr19:2329566-2329884(+)$1	1	102	114	19.1730
............	chr7:76189438-76189673(+)$1	1	122	134	19.7500
((..........	chr19:3630376-3630675(-)$1	1	17	29	18.4038
))).)))))...	chr17:7750908-7751182(+)$1	1	53	65	16.8653
)..)))).....	chr7:72416686-72416954(+)$1	1	107	119	19.7500
)))).))((...	chr19:38910484-38910832(-)$1	1	85	97	15.5192
.....((((.((	chr20:61916393-61916673(+)$1	1	69	81	14.8461
............	chr3:47452099-47452366(+)$1	1	174	186	22.8269
(((..(((((..	chr19:50154177-50154516(+)$1	1	53	65	15.8076
...........(	chr1:2125593-2125860(-)$1	1	84	96	19.8461
)...)))(((((	chr22:49967052-49967398(-)$1	1	184	196	18.3076
.....)))))))	chr7:100172207-100172456(-)$1	1	24	36	18.1153
.((....))...	chr1:11863513-11863916(-)$1	1	215	227	19.1730
.)))........	chr1:228400838-228401221(+)$1	1	153	165	15.7115
((((((((((((	chr11:45826884-45827246(+)$1	1	97	109	18.5961

#PSSM
U : 0.57	u : 0.28	C : 0.07	g : 0.01	G : 0.01	c : 0.01	
C : 0.51	c : 0.23	G : 0.05	u : 0.05	U : 0.05	A : 0.03	g : 0.01	a : 0.01	
C : 0.46	c : 0.32	U : 0.17	A : 0.03	
C : 0.65	c : 0.19	u : 0.11	a : 0.01	U : 0.01	
C : 0.55	c : 0.26	U : 0.07	u : 0.03	A : 0.03	g : 0.01	
C : 0.61	c : 0.30	U : 0.03	u : 0.01	G : 0.01	
U : 0.46	u : 0.24	A : 0.09	C : 0.07	G : 0.03	a : 0.03	g : 0.01	c : 0.01	
G : 0.42	g : 0.24	A : 0.09	U : 0.07	C : 0.07	u : 0.03	c : 0.01	a : 0.01	
C : 0.48	c : 0.30	U : 0.17	G : 0.01	u : 0.01	
C : 0.61	c : 0.30	G : 0.03	a : 0.01	U : 0.01	
C : 0.65	c : 0.30	a : 0.01	U : 0.01	
C : 0.59	c : 0.26	u : 0.05	U : 0.05	A : 0.01	

#score	965.653846153846
#seq	52
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_transcript_m1_run2.nuc.txt

#NT
CCUGG	chr11:134116573-134116824(+)$1	251	187	192	15.0000
CCUGG	chr9:140342805-140343066(-)$1	261	61	66	15.0000
CCUGG	chr14:93693969-93694246(+)$1	277	171	176	15.0000
CCUGG	chr8:142441463-142441681(+)$1	218	205	210	15.0000
CCUGG	chr11:118915423-118915648(-)$1	225	161	166	15.0000
CCUGG	chr11:62574574-62574951(-)$1	377	53	58	15.0000
CCUGG	chr9:136230132-136230378(-)$1	246	30	35	15.0000
CCUGG	chr18:20876524-20876760(-)$1	236	13	18	15.0000
CCUGG	chr12:53582807-53583057(+)$1	250	116	121	15.0000
CCUGG	chr15:90374047-90374287(-)$1	240	61	66	15.0000
CCUGG	chr16:58740998-58741266(-)$1	268	193	198	15.0000
CCUGG	chr11:64894771-64895040(-)$1	269	87	92	15.0000
CCUGG	chr9:125581643-125581996(-)$1	353	238	243	15.0000
CCUGG	chr6:7250438-7250671(+)$1	233	190	195	15.0000
CCUGG	chr7:128409747-128409969(+)$1	222	48	53	15.0000
CCUGG	chr20:308366-308603(+)$1	237	135	140	15.0000
CCUGG	chr9:115633205-115633472(+)$1	267	248	253	15.0000
CCUGG	chr16:743015-743286(-)$1	271	193	198	15.0000
CCUGG	chr9:127114311-127114571(+)$1	260	234	239	15.0000
Ccugg	chr22:30092251-30092494(+)$1	243	41	46	15.0000
CCUGG	chr17:80006247-80006486(-)$1	239	2	7	15.0000
ccugg	chr15:75128543-75128864(-)$1	321	37	42	15.0000
ccugg	chr16:30542719-30543052(-)$1	333	82	87	15.0000
ccugg	chr16:29679900-29680174(+)$1	274	93	98	15.0000
CCUGG	chr1:160968123-160968386(-)$1	263	71	76	15.0000
CCUGG	chr11:66044326-66044573(+)$1	247	29	34	15.0000
CCUGG	chr11:64621306-64621538(-)$1	232	202	207	15.0000
CCUGG	chr5:150648026-150648290(+)$1	264	82	87	15.0000
ccugg	chr20:3089432-3089684(-)$1	252	178	183	15.0000
CCUGG	chr19:3053085-3053332(-)$1	247	45	50	15.0000
CCUGG	chr17:40126670-40126935(+)$1	265	124	129	15.0000
ccugg	chr19:39982791-39983004(+)$1	213	134	139	15.0000
CCUGG	chr2:10567553-10567810(+)$1	257	3	8	15.0000
CCUGG	chr10:75573135-75573448(-)$1	313	36	41	15.0000
CCUGG	chr8:21863079-21863310(+)$1	231	221	226	15.0000
CCUGG	chr19:18124529-18124812(+)$1	283	11	16	15.0000
CCUGG	chr1:12628155-12628456(-)$1	301	139	144	15.0000
CCUGG	chr16:69358722-69359010(+)$1	288	170	175	15.0000
CCUGG	chr11:66043721-66043975(+)$1	254	38	43	15.0000
CCUGG	chr12:58114808-58115165(+)$1	357	36	41	15.0000
ccugg	chr18:47918665-47918902(+)$1	237	231	236	15.0000
CCUGG	chr7:98993800-98994025(-)$1	225	14	19	15.0000
CCUGG	chr1:145510197-145510444(+)$1	247	225	230	15.0000
ccugg	chr1:109606605-109606883(-)$1	278	245	250	15.0000
CCUGG	chr15:75950778-75951044(+)$1	266	139	144	15.0000
CCUGG	chr22:21351713-21351958(+)$1	245	166	171	15.0000
CCUGG	chr17:27941169-27941471(+)$1	302	14	19	15.0000
CCUGG	chr19:14041446-14041772(+)$1	326	186	191	15.0000
CCUGG	chr12:122692299-122692613(-)$1	314	253	258	15.0000
CCUGG	chr22:19957060-19957326(+)$1	266	121	126	15.0000
CCUGG	chr21:46188897-46189134(-)$1	237	9	14	15.0000
CCUGG	chr19:541797-542041(+)$1	244	133	138	15.0000
CCUGG	chr17:40352532-40352776(-)$1	244	87	92	15.0000
CCUGG	chr1:24121831-24122116(+)$1	285	8	13	15.0000
CCUGG	chr9:132265193-132265436(+)$1	243	147	152	15.0000
CCUGG	chr13:30085268-30085546(-)$1	278	121	126	15.0000

#otherMatches

#Struct PSSM
eccc]	chr17:76792105-76792401(-)$1	296	199	204	15.0000
sssee	chr11:134116573-134116824(+)$1	251	187	192	15.0000
dd[cc	chr9:140342805-140343066(-)$1	261	61	66	15.0000
GGG}A	chr14:93693969-93694246(+)$1	277	171	176	15.0000
}JJJJ	chr8:142441463-142441681(+)$1	218	205	210	15.0000
ggggg	chr11:118915423-118915648(-)$1	225	161	166	15.0000
CC{DD	chr11:62574574-62574951(-)$1	377	53	58	15.0000
EE{DD	chr9:136230132-136230378(-)$1	246	30	35	15.0000
GEEEE	chr18:20876524-20876760(-)$1	236	13	18	15.0000
ccddd	chr12:53582807-53583057(+)$1	250	116	121	15.0000
iiiii	chr15:90374047-90374287(-)$1	240	61	66	15.0000
GGGGG	chr16:58740998-58741266(-)$1	268	193	198	15.0000
eeeii	chr11:64894771-64895040(-)$1	269	87	92	15.0000
FFFFF	chr9:125581643-125581996(-)$1	353	238	243	15.0000
ee444	chr6:7250438-7250671(+)$1	233	190	195	15.0000
eeeee	chr7:128409747-128409969(+)$1	222	48	53	15.0000
tttee	chr20:308366-308603(+)$1	237	135	140	15.0000
odddd	chr9:115633205-115633472(+)$1	267	248	253	15.0000
}FFFF	chr16:743015-743286(-)$1	271	193	198	15.0000
eeeee	chr9:127114311-127114571(+)$1	260	234	239	15.0000
ddddo	chr22:30092251-30092494(+)$1	243	41	46	15.0000
::CCC	chr17:80006247-80006486(-)$1	239	2	7	15.0000
bdddd	chr15:75128543-75128864(-)$1	321	37	42	15.0000
fffff	chr16:30542719-30543052(-)$1	333	82	87	15.0000
ggggg	chr16:29679900-29680174(+)$1	274	93	98	15.0000
6666d	chr1:160968123-160968386(-)$1	263	71	76	15.0000
!!ggg	chr11:66044326-66044573(+)$1	247	29	34	15.0000
IIIII	chr11:64621306-64621538(-)$1	232	202	207	15.0000
c4444	chr5:150648026-150648290(+)$1	264	82	87	15.0000
::::J	chr20:3089432-3089684(-)$1	252	178	183	15.0000
#bb[d	chr19:3053085-3053332(-)$1	247	45	50	15.0000
aiiii	chr17:40126670-40126935(+)$1	265	124	129	15.0000
ffeee	chr19:39982791-39983004(+)$1	213	134	139	15.0000
DDDDD	chr2:10567553-10567810(+)$1	257	3	8	15.0000
ca]gg	chr10:75573135-75573448(-)$1	313	36	41	15.0000
:FFFF	chr8:21863079-21863310(+)$1	231	221	226	15.0000
ggggg	chr19:18124529-18124812(+)$1	283	11	16	15.0000
lcccc	chr1:12628155-12628456(-)$1	301	139	144	15.0000
rffff	chr16:69358722-69359010(+)$1	288	170	175	15.0000
hh[hh	chr11:66043721-66043975(+)$1	254	38	43	15.0000
ff!!e	chr12:58114808-58115165(+)$1	357	36	41	15.0000
EEEEE	chr18:47918665-47918902(+)$1	237	231	236	15.0000
JJJJJ	chr7:98993800-98994025(-)$1	225	14	19	15.0000
IIIII	chr1:145510197-145510444(+)$1	247	225	230	15.0000
ffffc	chr1:109606605-109606883(-)$1	278	245	250	15.0000
DDDLL	chr15:75950778-75951044(+)$1	266	139	144	15.0000
eee]c	chr22:21351713-21351958(+)$1	245	166	171	15.0000
nnndd	chr17:27941169-27941471(+)$1	302	14	19	15.0000
:gggg	chr19:14041446-14041772(+)$1	326	186	191	15.0000
dddds	chr12:122692299-122692613(-)$1	314	253	258	15.0000
iiiii	chr22:19957060-19957326(+)$1	266	121	126	15.0000
EEEEE	chr21:46188897-46189134(-)$1	237	9	14	15.0000
ggggg	chr19:541797-542041(+)$1	244	133	138	15.0000
ggggg	chr17:40352532-40352776(-)$1	244	87	92	15.0000
innnn	chr1:24121831-24122116(+)$1	285	8	13	15.0000
bccco	chr9:132265193-132265436(+)$1	243	147	152	15.0000
eeeee	chr13:30085268-30085546(-)$1	278	121	126	15.0000

#DB
)))).	chr17:76792105-76792401(-)$1	1	199	204	15.0000
...))	chr11:134116573-134116824(+)$1	1	187	192	15.0000
((.((	chr9:140342805-140343066(-)$1	1	61	66	15.0000
))).)	chr14:93693969-93694246(+)$1	1	171	176	15.0000
.))))	chr8:142441463-142441681(+)$1	1	205	210	15.0000
(((((	chr11:118915423-118915648(-)$1	1	161	166	15.0000
((.((	chr11:62574574-62574951(-)$1	1	53	58	15.0000
((.((	chr9:136230132-136230378(-)$1	1	30	35	15.0000
(((((	chr18:20876524-20876760(-)$1	1	13	18	15.0000
(((((	chr12:53582807-53583057(+)$1	1	116	121	15.0000
(((((	chr15:90374047-90374287(-)$1	1	61	66	15.0000
)))))	chr16:58740998-58741266(-)$1	1	193	198	15.0000
(((((	chr11:64894771-64895040(-)$1	1	87	92	15.0000
)))))	chr9:125581643-125581996(-)$1	1	238	243	15.0000
))...	chr6:7250438-7250671(+)$1	1	190	195	15.0000
(((((	chr7:128409747-128409969(+)$1	1	48	53	15.0000
...))	chr20:308366-308603(+)$1	1	135	140	15.0000
.))))	chr9:115633205-115633472(+)$1	1	248	253	15.0000
.))))	chr16:743015-743286(-)$1	1	193	198	15.0000
(((((	chr9:127114311-127114571(+)$1	1	234	239	15.0000
((((.	chr22:30092251-30092494(+)$1	1	41	46	15.0000
..(((	chr17:80006247-80006486(-)$1	1	2	7	15.0000
)))))	chr15:75128543-75128864(-)$1	1	37	42	15.0000
(((((	chr16:30542719-30543052(-)$1	1	82	87	15.0000
(((((	chr16:29679900-29680174(+)$1	1	93	98	15.0000
....)	chr1:160968123-160968386(-)$1	1	71	76	15.0000
..(((	chr11:66044326-66044573(+)$1	1	29	34	15.0000
)))))	chr11:64621306-64621538(-)$1	1	202	207	15.0000
)....	chr5:150648026-150648290(+)$1	1	82	87	15.0000
....)	chr20:3089432-3089684(-)$1	1	178	183	15.0000
.((.(	chr19:3053085-3053332(-)$1	1	45	50	15.0000
(((((	chr17:40126670-40126935(+)$1	1	124	129	15.0000
)))))	chr19:39982791-39983004(+)$1	1	134	139	15.0000
(((((	chr2:10567553-10567810(+)$1	1	3	8	15.0000
)).))	chr10:75573135-75573448(-)$1	1	36	41	15.0000
.))))	chr8:21863079-21863310(+)$1	1	221	226	15.0000
(((((	chr19:18124529-18124812(+)$1	1	11	16	15.0000
.))))	chr1:12628155-12628456(-)$1	1	139	144	15.0000
.))))	chr16:69358722-69359010(+)$1	1	170	175	15.0000
((.((	chr11:66043721-66043975(+)$1	1	38	43	15.0000
((..(	chr12:58114808-58115165(+)$1	1	36	41	15.0000
)))))	chr18:47918665-47918902(+)$1	1	231	236	15.0000
(((((	chr7:98993800-98994025(-)$1	1	14	19	15.0000
)))))	chr1:145510197-145510444(+)$1	1	225	230	15.0000
)))))	chr1:109606605-109606883(-)$1	1	245	250	15.0000
(((..	chr15:75950778-75951044(+)$1	1	139	144	15.0000
))).)	chr22:21351713-21351958(+)$1	1	166	171	15.0000
...))	chr17:27941169-27941471(+)$1	1	14	19	15.0000
.((((	chr19:14041446-14041772(+)$1	1	186	191	15.0000
((((.	chr12:122692299-122692613(-)$1	1	253	258	15.0000
)))))	chr22:19957060-19957326(+)$1	1	121	126	15.0000
(((((	chr21:46188897-46189134(-)$1	1	9	14	15.0000
(((((	chr19:541797-542041(+)$1	1	133	138	15.0000
(((((	chr17:40352532-40352776(-)$1	1	87	92	15.0000
(....	chr1:24121831-24122116(+)$1	1	8	13	15.0000
((((.	chr9:132265193-132265436(+)$1	1	147	152	15.0000
(((((	chr13:30085268-30085546(-)$1	1	121	126	15.0000

#PSSM
C : 0.87	c : 0.12	
C : 0.85	c : 0.14	
U : 0.85	u : 0.14	
G : 0.85	g : 0.14	
G : 0.85	g : 0.14	

#score	855.0000000000005
#seq	57
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_transcript_m1_run1.nuc.txt

#NT
CACC	chr1:40041480-40041737(-)$1	257	5	9	12.0000
CACC	chr1:113243791-113244067(-)$1	276	168	172	12.0000
CACC	chr19:59061452-59061707(+)$1	255	75	79	12.0000
CACC	chrX:153664129-153664389(+)$1	260	14	18	12.0000
CACC	chr7:100304657-100304916(+)$1	259	104	108	12.0000
CACC	chr10:81928624-81928855(-)$1	231	12	16	12.0000
CACC	chr19:3982717-3982925(-)$1	208	78	82	12.0000
CACC	chr12:124809545-124809783(-)$1	238	175	179	12.0000
CACC	chr1:173450366-173450585(+)$1	219	117	121	12.0000
CACC	chr19:50304557-50304821(+)$1	264	19	23	12.0000
CACC	chr1:43162490-43162715(+)$1	225	48	52	12.0000
cacc	chr8:124219296-124219562(+)$1	266	103	107	12.0000
CACC	chr4:109543160-109543385(+)$1	225	156	160	12.0000
CACC	chr19:3982191-3982407(-)$1	216	41	45	12.0000
CACC	chr19:12766427-12766706(-)$1	279	46	50	12.0000
CACC	chr6:31614089-31614314(-)$1	225	122	126	12.0000
CACC	chrX:153607768-153608015(+)$1	247	68	72	12.0000
CACC	chr7:72361079-72361346(+)$1	267	9	13	12.0000
CACC	chr12:6646695-6646934(+)$1	239	77	81	12.0000
CACC	chr19:2245344-2245560(+)$1	216	32	36	12.0000
CACC	chr19:2040956-2041202(-)$1	246	146	150	12.0000
CACC	chr5:137906622-137906866(-)$1	244	65	69	12.0000
CACC	chr19:41306654-41306905(+)$1	251	26	30	12.0000
cacc	chr17:41466179-41466474(-)$1	295	162	166	12.0000
CACC	chr16:2256979-2257212(+)$1	233	9	13	12.0000
CACC	chr19:3053935-3054138(-)$1	203	115	119	12.0000
CACC	chr2:10269444-10269722(+)$1	278	153	157	12.0000
CACC	chr1:36807113-36807385(-)$1	272	46	50	12.0000
CACC	chr8:146016744-146016975(-)$1	231	129	133	12.0000
CACC	chr16:2226028-2226274(+)$1	246	9	13	12.0000
CACC	chr1:54871779-54872065(-)$1	286	123	127	12.0000
CACC	chr3:45000522-45000928(-)$1	406	14	18	12.0000
CACC	chr2:96951953-96952166(-)$1	213	156	160	12.0000
CACC	chr1:22167556-22167808(-)$1	252	91	95	12.0000
CACC	chr3:10353571-10353877(-)$1	306	180	184	12.0000
CACC	chr16:204215-204465(+)$1	250	78	82	12.0000
CACC	chr3:53269026-53269286(-)$1	260	247	251	12.0000
CACC	chr19:3977794-3978030(-)$1	236	114	118	12.0000
CACC	chr16:30078530-30078739(+)$1	209	41	45	12.0000
CACC	chr19:10941581-10941829(+)$1	248	48	52	12.0000
CACC	chr19:1432505-1432770(+)$1	265	25	29	12.0000
CACC	chr3:52027757-52028072(-)$1	315	128	132	12.0000
CACC	chr8:144899720-144899982(-)$1	262	123	127	12.0000
CACC	chr20:32883141-32883438(-)$1	297	28	32	12.0000
CACC	chrX:153590567-153590787(-)$1	220	95	99	12.0000
CACC	chr1:40027923-40028187(-)$1	264	42	46	12.0000
CACC	chr8:124219473-124219765(+)$1	292	11	15	12.0000
CACC	chr8:146016731-146016944(-)$1	213	98	102	12.0000
CACC	chr16:69788464-69788713(-)$1	249	104	108	12.0000
CACC	chr6:31760162-31760392(-)$1	230	86	90	12.0000
CACC	chr7:72416898-72417192(+)$1	294	143	147	12.0000
CACC	chr16:28854271-28854549(-)$1	278	39	43	12.0000
CACC	chr17:18087965-18088292(+)$1	327	96	100	12.0000
CACC	chr1:11861290-11861542(-)$1	252	135	139	12.0000
CACC	chr1:36807219-36807479(-)$1	260	35	39	12.0000
CACC	chr17:2595789-2596074(-)$1	285	54	58	12.0000
CACC	chr22:41739318-41739601(+)$1	283	25	29	12.0000
CACC	chr15:67073351-67073604(+)$1	253	5	9	12.0000
CACC	chr7:44156375-44156609(-)$1	234	55	59	12.0000
CACC	chr7:150647144-150647415(-)$1	271	49	53	12.0000
CACC	chr19:14554300-14554533(+)$1	233	12	16	12.0000
CACC	chr17:73832857-73833100(-)$1	243	27	31	12.0000
CACC	chrX:39932659-39932944(-)$1	285	57	61	12.0000
CACC	chr1:202912853-202913115(-)$1	262	211	215	12.0000
CACC	chr1:43166522-43166783(+)$1	261	15	19	12.0000
CACC	chr1:1717540-1717746(-)$1	206	100	104	12.0000
CACC	chr16:3820539-3820876(-)$1	337	43	47	12.0000
CACC	chr19:17972895-17973128(+)$1	233	75	79	12.0000
CACC	chr22:42302015-42302248(+)$1	233	36	40	12.0000
CACC	chrX:153590587-153590799(-)$1	212	107	111	12.0000
CACC	chr19:3976401-3976657(-)$1	256	147	151	12.0000
CACC	chr19:14561029-14561279(+)$1	250	147	151	12.0000
CACC	chr11:63978423-63978645(+)$1	222	0	4	12.0000
CACC	chr16:84623698-84623965(-)$1	267	66	70	12.0000
CACC	chr16:29818795-29819047(+)$1	252	187	191	12.0000
CACC	chr6:31747813-31748028(-)$1	215	54	58	12.0000
CACC	chr17:75488648-75488898(+)$1	250	56	60	12.0000
CACC	chr9:138825228-138825447(-)$1	219	120	124	12.0000
CACC	chr3:52029340-52029563(-)$1	223	106	110	12.0000
CACC	chr19:34887113-34887398(+)$1	285	121	125	12.0000
cacc	chr17:80477543-80477827(+)$1	284	176	180	12.0000
CACC	chr8:144899147-144899418(-)$1	271	134	138	12.0000
CACC	chr8:124194928-124195224(+)$1	296	147	151	12.0000
CACC	chr2:43452078-43452432(-)$1	354	83	87	12.0000
CACC	chr19:14066897-14067146(+)$1	249	37	41	12.0000
CACC	chr17:38151116-38151367(+)$1	251	221	225	12.0000
CACC	chr12:6645853-6646056(+)$1	203	19	23	12.0000
CACC	chr1:47685618-47685894(-)$1	276	55	59	12.0000

#otherMatches

#Struct PSSM
c:::	chr19:3977840-3978066(-)$1	226	150	154	12.0000
f"""	chr1:40041480-40041737(-)$1	257	5	9	12.0000
::::	chr1:113243791-113244067(-)$1	276	168	172	12.0000
ccc"	chr19:59061452-59061707(+)$1	255	75	79	12.0000
$$$f	chrX:153664129-153664389(+)$1	260	14	18	12.0000
eell	chr7:100304657-100304916(+)$1	259	104	108	12.0000
ppdd	chr10:81928624-81928855(-)$1	231	12	16	12.0000
eeee	chr19:3982717-3982925(-)$1	208	78	82	12.0000
YYEE	chr12:124809545-124809783(-)$1	238	175	179	12.0000
MMMD	chr1:173450366-173450585(+)$1	219	117	121	12.0000
mmff	chr19:50304557-50304821(+)$1	264	19	23	12.0000
meee	chr1:43162490-43162715(+)$1	225	48	52	12.0000
====	chr8:124219296-124219562(+)$1	266	103	107	12.0000
ffff	chr4:109543160-109543385(+)$1	225	156	160	12.0000
E{DD	chr19:3982191-3982407(-)$1	216	41	45	12.0000
"""c	chr19:12766427-12766706(-)$1	279	46	50	12.0000
dd[b	chr6:31614089-31614314(-)$1	225	122	126	12.0000
b]dd	chrX:153607768-153608015(+)$1	247	68	72	12.0000
:::C	chr7:72361079-72361346(+)$1	267	9	13	12.0000
ddbb	chr12:6646695-6646934(+)$1	239	77	81	12.0000
ffff	chr19:2245344-2245560(+)$1	216	32	36	12.0000
c[bb	chr19:2040956-2041202(-)$1	246	146	150	12.0000
c:::	chr5:137906622-137906866(-)$1	244	65	69	12.0000
dddd	chr19:41306654-41306905(+)$1	251	26	30	12.0000
lddd	chr17:41466179-41466474(-)$1	295	162	166	12.0000
I{CC	chr16:2256979-2257212(+)$1	233	9	13	12.0000
"""f	chr19:3053935-3054138(-)$1	203	115	119	12.0000
::::	chr2:10269444-10269722(+)$1	278	153	157	12.0000
::==	chr1:36807113-36807385(-)$1	272	46	50	12.0000
fff2	chr8:146016744-146016975(-)$1	231	129	133	12.0000
eee[	chr16:2226028-2226274(+)$1	246	9	13	12.0000
a:II	chr1:54871779-54872065(-)$1	286	123	127	12.0000
CCC:	chr3:45000522-45000928(-)$1	406	14	18	12.0000
5555	chr2:96951953-96952166(-)$1	213	156	160	12.0000
ccc:	chr1:22167556-22167808(-)$1	252	91	95	12.0000
bb]f	chr3:10353571-10353877(-)$1	306	180	184	12.0000
::::	chr16:204215-204465(+)$1	250	78	82	12.0000
oooc	chr3:53269026-53269286(-)$1	260	247	251	12.0000
333c	chr19:3977794-3978030(-)$1	236	114	118	12.0000
E{BB	chr16:30078530-30078739(+)$1	209	41	45	12.0000
::::	chr19:10941581-10941829(+)$1	248	48	52	12.0000
::::	chr19:1432505-1432770(+)$1	265	25	29	12.0000
e888	chr3:52027757-52028072(-)$1	315	128	132	12.0000
::::	chr8:144899720-144899982(-)$1	262	123	127	12.0000
gggg	chr20:32883141-32883438(-)$1	297	28	32	12.0000
eeee	chrX:153590567-153590787(-)$1	220	95	99	12.0000
[ccc	chr1:40027923-40028187(-)$1	264	42	46	12.0000
rrrr	chr8:124219473-124219765(+)$1	292	11	15	12.0000
fff2	chr8:146016731-146016944(-)$1	213	98	102	12.0000
::bb	chr16:69788464-69788713(-)$1	249	104	108	12.0000
G:::	chr6:31760162-31760392(-)$1	230	86	90	12.0000
nncc	chr7:72416898-72417192(+)$1	294	143	147	12.0000
cccc	chr16:28854271-28854549(-)$1	278	39	43	12.0000
[bb!	chr17:18087965-18088292(+)$1	327	96	100	12.0000
qqqq	chr1:11861290-11861542(-)$1	252	135	139	12.0000
ffff	chr1:36807219-36807479(-)$1	260	35	39	12.0000
llbb	chr17:2595789-2596074(-)$1	285	54	58	12.0000
B{DD	chr22:41739318-41739601(+)$1	283	25	29	12.0000
D:::	chr15:67073351-67073604(+)$1	253	5	9	12.0000
mmme	chr7:44156375-44156609(-)$1	234	55	59	12.0000
e"""	chr7:150647144-150647415(-)$1	271	49	53	12.0000
ddda	chr19:14554300-14554533(+)$1	233	12	16	12.0000
eeee	chr17:73832857-73833100(-)$1	243	27	31	12.0000
ccc2	chrX:39932659-39932944(-)$1	285	57	61	12.0000
vvvv	chr1:202912853-202913115(-)$1	262	211	215	12.0000
CCC:	chr1:43166522-43166783(+)$1	261	15	19	12.0000
^^cc	chr1:1717540-1717746(-)$1	206	100	104	12.0000
::::	chr16:3820539-3820876(-)$1	337	43	47	12.0000
eeee	chr19:17972895-17973128(+)$1	233	75	79	12.0000
B{HH	chr22:42302015-42302248(+)$1	233	36	40	12.0000
eeee	chrX:153590587-153590799(-)$1	212	107	111	12.0000
bppp	chr19:3976401-3976657(-)$1	256	147	151	12.0000
b[ee	chr19:14561029-14561279(+)$1	250	147	151	12.0000
:::e	chr11:63978423-63978645(+)$1	222	0	4	12.0000
a]gg	chr16:84623698-84623965(-)$1	267	66	70	12.0000
66ee	chr16:29818795-29819047(+)$1	252	187	191	12.0000
dd::	chr6:31747813-31748028(-)$1	215	54	58	12.0000
:bbb	chr17:75488648-75488898(+)$1	250	56	60	12.0000
rrrr	chr9:138825228-138825447(-)$1	219	120	124	12.0000
b"""	chr3:52029340-52029563(-)$1	223	106	110	12.0000
::cc	chr19:34887113-34887398(+)$1	285	121	125	12.0000
elll	chr17:80477543-80477827(+)$1	284	176	180	12.0000
ffff	chr8:144899147-144899418(-)$1	271	134	138	12.0000
!!bb	chr8:124194928-124195224(+)$1	296	147	151	12.0000
ddd]	chr2:43452078-43452432(-)$1	354	83	87	12.0000
ff22	chr19:14066897-14067146(+)$1	249	37	41	12.0000
ssss	chr17:38151116-38151367(+)$1	251	221	225	12.0000
FFFf	chr12:6645853-6646056(+)$1	203	19	23	12.0000
TTTT	chr1:47685618-47685894(-)$1	276	55	59	12.0000

#DB
)...	chr19:3977840-3978066(-)$1	1	150	154	12.0000
(...	chr1:40041480-40041737(-)$1	1	5	9	12.0000
....	chr1:113243791-113244067(-)$1	1	168	172	12.0000
(((.	chr19:59061452-59061707(+)$1	1	75	79	12.0000
...(	chrX:153664129-153664389(+)$1	1	14	18	12.0000
((..	chr7:100304657-100304916(+)$1	1	104	108	12.0000
..))	chr10:81928624-81928855(-)$1	1	12	16	12.0000
((((	chr19:3982717-3982925(-)$1	1	78	82	12.0000
..))	chr12:124809545-124809783(-)$1	1	175	179	12.0000
...(	chr1:173450366-173450585(+)$1	1	117	121	12.0000
..))	chr19:50304557-50304821(+)$1	1	19	23	12.0000
.)))	chr1:43162490-43162715(+)$1	1	48	52	12.0000
((((	chr8:124219296-124219562(+)$1	1	103	107	12.0000
((((	chr4:109543160-109543385(+)$1	1	156	160	12.0000
(.((	chr19:3982191-3982407(-)$1	1	41	45	12.0000
...(	chr19:12766427-12766706(-)$1	1	46	50	12.0000
((.(	chr6:31614089-31614314(-)$1	1	122	126	12.0000
).))	chrX:153607768-153608015(+)$1	1	68	72	12.0000
...(	chr7:72361079-72361346(+)$1	1	9	13	12.0000
((((	chr12:6646695-6646934(+)$1	1	77	81	12.0000
((((	chr19:2245344-2245560(+)$1	1	32	36	12.0000
(.((	chr19:2040956-2041202(-)$1	1	146	150	12.0000
)...	chr5:137906622-137906866(-)$1	1	65	69	12.0000
((((	chr19:41306654-41306905(+)$1	1	26	30	12.0000
.)))	chr17:41466179-41466474(-)$1	1	162	166	12.0000
(.((	chr16:2256979-2257212(+)$1	1	9	13	12.0000
...(	chr19:3053935-3054138(-)$1	1	115	119	12.0000
....	chr2:10269444-10269722(+)$1	1	153	157	12.0000
..((	chr1:36807113-36807385(-)$1	1	46	50	12.0000
))).	chr8:146016744-146016975(-)$1	1	129	133	12.0000
(((.	chr16:2226028-2226274(+)$1	1	9	13	12.0000
).((	chr1:54871779-54872065(-)$1	1	123	127	12.0000
(((.	chr3:45000522-45000928(-)$1	1	14	18	12.0000
....	chr2:96951953-96952166(-)$1	1	156	160	12.0000
))).	chr1:22167556-22167808(-)$1	1	91	95	12.0000
)).)	chr3:10353571-10353877(-)$1	1	180	184	12.0000
....	chr16:204215-204465(+)$1	1	78	82	12.0000
...)	chr3:53269026-53269286(-)$1	1	247	251	12.0000
...)	chr19:3977794-3978030(-)$1	1	114	118	12.0000
(.((	chr16:30078530-30078739(+)$1	1	41	45	12.0000
....	chr19:10941581-10941829(+)$1	1	48	52	12.0000
....	chr19:1432505-1432770(+)$1	1	25	29	12.0000
)...	chr3:52027757-52028072(-)$1	1	128	132	12.0000
....	chr8:144899720-144899982(-)$1	1	123	127	12.0000
))))	chr20:32883141-32883438(-)$1	1	28	32	12.0000
((((	chrX:153590567-153590787(-)$1	1	95	99	12.0000
.(((	chr1:40027923-40028187(-)$1	1	42	46	12.0000
....	chr8:124219473-124219765(+)$1	1	11	15	12.0000
))).	chr8:146016731-146016944(-)$1	1	98	102	12.0000
..((	chr16:69788464-69788713(-)$1	1	104	108	12.0000
(...	chr6:31760162-31760392(-)$1	1	86	90	12.0000
..))	chr7:72416898-72417192(+)$1	1	143	147	12.0000
))))	chr16:28854271-28854549(-)$1	1	39	43	12.0000
.((.	chr17:18087965-18088292(+)$1	1	96	100	12.0000
....	chr1:11861290-11861542(-)$1	1	135	139	12.0000
((((	chr1:36807219-36807479(-)$1	1	35	39	12.0000
..))	chr17:2595789-2596074(-)$1	1	54	58	12.0000
(.((	chr22:41739318-41739601(+)$1	1	25	29	12.0000
(...	chr15:67073351-67073604(+)$1	1	5	9	12.0000
...)	chr7:44156375-44156609(-)$1	1	55	59	12.0000
(...	chr7:150647144-150647415(-)$1	1	49	53	12.0000
((((	chr19:14554300-14554533(+)$1	1	12	16	12.0000
))))	chr17:73832857-73833100(-)$1	1	27	31	12.0000
))).	chrX:39932659-39932944(-)$1	1	57	61	12.0000
....	chr1:202912853-202913115(-)$1	1	211	215	12.0000
(((.	chr1:43166522-43166783(+)$1	1	15	19	12.0000
..))	chr1:1717540-1717746(-)$1	1	100	104	12.0000
....	chr16:3820539-3820876(-)$1	1	43	47	12.0000
))))	chr19:17972895-17973128(+)$1	1	75	79	12.0000
(.((	chr22:42302015-42302248(+)$1	1	36	40	12.0000
((((	chrX:153590587-153590799(-)$1	1	107	111	12.0000
(...	chr19:3976401-3976657(-)$1	1	147	151	12.0000
(.((	chr19:14561029-14561279(+)$1	1	147	151	12.0000
...(	chr11:63978423-63978645(+)$1	1	0	4	12.0000
).))	chr16:84623698-84623965(-)$1	1	66	70	12.0000
..))	chr16:29818795-29819047(+)$1	1	187	191	12.0000
))..	chr6:31747813-31748028(-)$1	1	54	58	12.0000
.(((	chr17:75488648-75488898(+)$1	1	56	60	12.0000
....	chr9:138825228-138825447(-)$1	1	120	124	12.0000
(...	chr3:52029340-52029563(-)$1	1	106	110	12.0000
..((	chr19:34887113-34887398(+)$1	1	121	125	12.0000
(...	chr17:80477543-80477827(+)$1	1	176	180	12.0000
((((	chr8:144899147-144899418(-)$1	1	134	138	12.0000
..((	chr8:124194928-124195224(+)$1	1	147	151	12.0000
))).	chr2:43452078-43452432(-)$1	1	83	87	12.0000
))..	chr19:14066897-14067146(+)$1	1	37	41	12.0000
....	chr17:38151116-38151367(+)$1	1	221	225	12.0000
((((	chr12:6645853-6646056(+)$1	1	19	23	12.0000
....	chr1:47685618-47685894(-)$1	1	55	59	12.0000

#PSSM
C : 0.96	c : 0.03	
A : 0.96	a : 0.03	
C : 0.96	c : 0.03	
C : 0.96	c : 0.03	

#score	1068.0000000000005
#seq	89
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_CDS_m2_run2.nuc.txt

#NT
GUGGAG	chr1:161136792-161137053(+)$1	261	106	112	14.5625
UUGGAG	chr1:113161513-113161838(-)$1	325	140	146	13.5468
CUGGAG	chr6:31856977-31857220(-)$1	243	23	29	14.6406
CUGGAG	chrX:153580151-153580376(-)$1	225	20	26	14.6406
GUGGAG	chr2:97297044-97297333(-)$1	289	136	142	14.5625
CUGGAG	chr22:22279841-22280128(-)$1	287	146	152	14.6406
AUGGAG	chr11:70271337-70271600(+)$1	263	49	55	14.2500
auggag	chr7:128455695-128456042(+)$1	347	53	59	14.2500
CUGGAG	chr1:153723473-153723794(+)$1	321	297	303	14.6406
CUGGAG	chr3:48956187-48956455(+)$1	268	108	114	14.6406
CUGGAG	chr6:17706452-17706714(-)$1	262	254	260	14.6406
GUGGAG	chr4:74043083-74043361(-)$1	278	111	117	14.5625
CUGGAG	chr11:59522911-59523223(+)$1	312	179	185	14.6406
UUGGAG	chr7:140154839-140155122(-)$1	283	136	142	13.5468
UUGGAG	chr9:127998907-127999154(-)$1	247	45	51	13.5468
AUGGAG	chr4:995122-995422(+)$1	300	17	23	14.2500
CUGGAG	chr8:145737243-145737512(-)$1	269	90	96	14.6406
CUGGAG	chr19:15349605-15349898(-)$1	293	129	135	14.6406
UUGGAG	chr4:59236-59466(+)$1	230	182	188	13.5468
UUGGAG	chr12:53849039-53849251(+)$1	212	174	180	13.5468
AUGGAG	chr22:20039885-20040153(+)$1	268	110	116	14.2500
GUGGAG	chr11:6566064-6566366(+)$1	302	110	116	14.5625
GUGGAG	chr5:64859156-64859449(+)$1	293	146	152	14.5625
GUGGAG	chr2:232327814-232328108(-)$1	294	46	52	14.5625
GUGGAG	chr12:121783540-121783798(-)$1	258	74	80	14.5625
CUGGAG	chr19:7997460-7997713(-)$1	253	196	202	14.6406
CUGGAG	chr16:4910940-4911226(+)$1	286	133	139	14.6406
AUGGAG	chr12:49110297-49110592(-)$1	295	134	140	14.2500
GUGGAG	chr12:133365588-133365904(-)$1	316	34	40	14.5625
GUGGAG	chr11:62367968-62368245(-)$1	277	156	162	14.5625
GUGGAG	chr12:133256408-133256673(-)$1	265	101	107	14.5625
GUGGAG	chr7:150764937-150765222(+)$1	285	29	35	14.5625
GUGGAG	chr15:93528745-93529009(+)$1	264	126	132	14.5625
CUGGAG	chr1:223940504-223940757(+)$1	253	30	36	14.6406
AUGGAG	chr2:54197725-54198039(-)$1	314	118	124	14.2500
GUGGAG	chr1:150528613-150528871(+)$1	258	73	79	14.5625
AUGGAG	chr6:28120738-28121104(+)$1	366	164	170	14.2500
CUGGAG	chrX:153674738-153675009(+)$1	271	28	34	14.6406
AUGGAG	chr7:12373004-12373273(-)$1	269	103	109	14.2500
CUGGAG	chr8:145665998-145666266(-)$1	268	160	166	14.6406
AUGGAG	chr19:11224281-11224528(+)$1	247	191	197	14.2500
UUggag	chr6:44217998-44218204(+)$1	206	29	35	13.5468
GUGGAG	chr3:119180707-119181026(-)$1	319	181	187	14.5625
CUGGAG	chr19:47769813-47770132(+)$1	319	79	85	14.6406
GUGGAG	chr11:57558940-57559195(+)$1	255	25	31	14.5625
UUGGAG	chr6:43738876-43739150(+)$1	274	133	139	13.5468
AUGGAG	chrX:153693691-153693952(+)$1	261	133	139	14.2500
CUGGAG	chr20:61542807-61543071(-)$1	264	248	254	14.6406
GUGGAG	chr22:40754764-40755085(+)$1	321	314	320	14.5625
GUGGAG	chr11:65348441-65348693(+)$1	252	180	186	14.5625
GUGGAG	chr21:47746271-47746552(+)$1	281	155	161	14.5625
CUGGAG	chr20:62339900-62340162(+)$1	262	47	53	14.6406
AUGGAG	chr16:9185803-9186090(+)$1	287	98	104	14.2500
GUGGAG	chr17:27074137-27074409(+)$1	272	22	28	14.5625
AUGGAG	chr5:139905727-139906002(+)$1	275	96	102	14.2500
CUGGAG	chr1:39815091-39815400(+)$1	309	94	100	14.6406
GUGGAG	chr12:121125161-121125463(+)$1	302	101	107	14.5625
CUGGAG	chr11:71189340-71189628(+)$1	288	124	130	14.6406
auggag	chr12:6878997-6879265(+)$1	268	135	141	14.2500
AUGGAG	chr17:25636183-25636399(+)$1	216	30	36	14.2500
CUGGAG	chr19:12790176-12790444(-)$1	268	24	30	14.6406
AUGGAG	chr7:140624234-140624488(-)$1	254	51	57	14.2500
CUGGAG	chr4:142154865-142155332(+)$1	467	30	36	14.6406

#otherMatches

#Struct PSSM
eee:EE	chr8:11667179-11667440(+)$1	261	132	138	14.2500
88dddd	chr1:161136792-161137053(+)$1	261	106	112	14.5625
eccc22	chr1:113161513-113161838(-)$1	325	140	146	13.5468
hhhhmm	chr6:31856977-31857220(-)$1	243	23	29	14.6406
ffff[e	chrX:153580151-153580376(-)$1	225	20	26	14.6406
eeDDDD	chr2:97297044-97297333(-)$1	289	136	142	14.5625
gggggg	chr22:22279841-22280128(-)$1	287	146	152	14.6406
====[a	chr11:70271337-70271600(+)$1	263	49	55	14.2500
CCMMMM	chr7:128455695-128456042(+)$1	347	53	59	14.2500
mmmmdd	chr1:153723473-153723794(+)$1	321	297	303	14.6406
eellle	chr3:48956187-48956455(+)$1	268	108	114	14.6406
nnnccc	chr6:17706452-17706714(-)$1	262	254	260	14.6406
c]dddd	chr4:74043083-74043361(-)$1	278	111	117	14.5625
eeDDDD	chr11:59522911-59523223(+)$1	312	179	185	14.6406
eee###	chr7:140154839-140155122(-)$1	283	136	142	13.5468
gggggg	chr9:127998907-127999154(-)$1	247	45	51	13.5468
c[bb[d	chr4:995122-995422(+)$1	300	17	23	14.2500
dd333e	chr8:145737243-145737512(-)$1	269	90	96	14.6406
ddd!!b	chr19:15349605-15349898(-)$1	293	129	135	14.6406
ffff]a	chr4:59236-59466(+)$1	230	182	188	13.5468
}EEEEE	chr12:53849039-53849251(+)$1	212	174	180	13.5468
ddd^^^	chr22:20039885-20040153(+)$1	268	110	116	14.2500
KGGGGG	chr11:6566064-6566366(+)$1	302	110	116	14.5625
eeeee[	chr5:64859156-64859449(+)$1	293	146	152	14.5625
gggggs	chr2:232327814-232328108(-)$1	294	46	52	14.5625
2fffff	chr12:121783540-121783798(-)$1	258	74	80	14.5625
}FFFFF	chr19:7997460-7997713(-)$1	253	196	202	14.6406
eeee""	chr16:4910940-4911226(+)$1	286	133	139	14.6406
d]eeee	chr12:49110297-49110592(-)$1	295	134	140	14.2500
ddd!!a	chr12:133365588-133365904(-)$1	316	34	40	14.5625
c[dddd	chr11:62367968-62368245(-)$1	277	156	162	14.5625
777fff	chr12:133256408-133256673(-)$1	265	101	107	14.5625
c]dddd	chr7:150764937-150765222(+)$1	285	29	35	14.5625
]accc]	chr15:93528745-93529009(+)$1	264	126	132	14.5625
HH:ddd	chr1:223940504-223940757(+)$1	253	30	36	14.6406
:CCC{F	chr2:54197725-54198039(-)$1	314	118	124	14.2500
]eeeee	chr1:150528613-150528871(+)$1	258	73	79	14.5625
odddd4	chr6:28120738-28121104(+)$1	366	164	170	14.2500
dddd::	chrX:153674738-153675009(+)$1	271	28	34	14.6406
]ccc:e	chr7:12373004-12373273(-)$1	269	103	109	14.2500
]ccc:f	chr8:145665998-145666266(-)$1	268	160	166	14.6406
ffffff	chr19:11224281-11224528(+)$1	247	191	197	14.2500
qqqqqq	chr6:44217998-44218204(+)$1	206	29	35	13.5468
HHHccc	chr3:119180707-119181026(-)$1	319	181	187	14.5625
abbmmm	chr19:47769813-47770132(+)$1	319	79	85	14.6406
E{BB{B	chr11:57558940-57559195(+)$1	255	25	31	14.5625
"eeeee	chr6:43738876-43739150(+)$1	274	133	139	13.5468
f[bb$$	chrX:153693691-153693952(+)$1	261	133	139	14.2500
ccc22c	chr20:61542807-61543071(-)$1	264	248	254	14.6406
C}DDDD	chr22:40754764-40755085(+)$1	321	314	320	14.5625
D}EEEE	chr11:65348441-65348693(+)$1	252	180	186	14.5625
FFEEEE	chr21:47746271-47746552(+)$1	281	155	161	14.5625
eeeee]	chr20:62339900-62340162(+)$1	262	47	53	14.6406
::EEEE	chr16:9185803-9186090(+)$1	287	98	104	14.2500
F{BB:e	chr17:27074137-27074409(+)$1	272	22	28	14.5625
>cccdd	chr5:139905727-139906002(+)$1	275	96	102	14.2500
fff[bb	chr1:39815091-39815400(+)$1	309	94	100	14.6406
eeeee"	chr12:121125161-121125463(+)$1	302	101	107	14.5625
ccc]ee	chr11:71189340-71189628(+)$1	288	124	130	14.6406
^^^^^^	chr12:6878997-6879265(+)$1	268	135	141	14.2500
mmdddd	chr17:25636183-25636399(+)$1	216	30	36	14.2500
eeee55	chr19:12790176-12790444(-)$1	268	24	30	14.6406
22ffff	chr7:140624234-140624488(-)$1	254	51	57	14.2500
hhhhhh	chr4:142154865-142155332(+)$1	467	30	36	14.6406

#DB
))).))	chr8:11667179-11667440(+)$1	1	132	138	14.2500
..))))	chr1:161136792-161137053(+)$1	1	106	112	14.5625
))))..	chr1:113161513-113161838(-)$1	1	140	146	13.5468
((((..	chr6:31856977-31857220(-)$1	1	23	29	14.6406
((((.(	chrX:153580151-153580376(-)$1	1	20	26	14.6406
))((((	chr2:97297044-97297333(-)$1	1	136	142	14.5625
((((((	chr22:22279841-22280128(-)$1	1	146	152	14.6406
((((.(	chr11:70271337-70271600(+)$1	1	49	55	14.2500
((....	chr7:128455695-128456042(+)$1	1	53	59	14.2500
....))	chr1:153723473-153723794(+)$1	1	297	303	14.6406
((...)	chr3:48956187-48956455(+)$1	1	108	114	14.6406
...)))	chr6:17706452-17706714(-)$1	1	254	260	14.6406
).))))	chr4:74043083-74043361(-)$1	1	111	117	14.5625
))))))	chr11:59522911-59523223(+)$1	1	179	185	14.6406
(((...	chr7:140154839-140155122(-)$1	1	136	142	13.5468
))))))	chr9:127998907-127999154(-)$1	1	45	51	13.5468
(.((.(	chr4:995122-995422(+)$1	1	17	23	14.2500
))...)	chr8:145737243-145737512(-)$1	1	90	96	14.6406
(((..(	chr19:15349605-15349898(-)$1	1	129	135	14.6406
)))).)	chr4:59236-59466(+)$1	1	182	188	13.5468
.)))))	chr12:53849039-53849251(+)$1	1	174	180	13.5468
(((...	chr22:20039885-20040153(+)$1	1	110	116	14.2500
.(((((	chr11:6566064-6566366(+)$1	1	110	116	14.5625
(((((.	chr5:64859156-64859449(+)$1	1	146	152	14.5625
(((((.	chr2:232327814-232328108(-)$1	1	46	52	14.5625
.)))))	chr12:121783540-121783798(-)$1	1	74	80	14.5625
.)))))	chr19:7997460-7997713(-)$1	1	196	202	14.6406
((((..	chr16:4910940-4911226(+)$1	1	133	139	14.6406
).))))	chr12:49110297-49110592(-)$1	1	134	140	14.2500
(((..(	chr12:133365588-133365904(-)$1	1	34	40	14.5625
(.((((	chr11:62367968-62368245(-)$1	1	156	162	14.5625
...)))	chr12:133256408-133256673(-)$1	1	101	107	14.5625
).))))	chr7:150764937-150765222(+)$1	1	29	35	14.5625
.)))).	chr15:93528745-93529009(+)$1	1	126	132	14.5625
((.(((	chr1:223940504-223940757(+)$1	1	30	36	14.6406
.(((.(	chr2:54197725-54198039(-)$1	1	118	124	14.2500
.)))))	chr1:150528613-150528871(+)$1	1	73	79	14.5625
.)))).	chr6:28120738-28121104(+)$1	1	164	170	14.2500
))))..	chrX:153674738-153675009(+)$1	1	28	34	14.6406
.))).(	chr7:12373004-12373273(-)$1	1	103	109	14.2500
.))).(	chr8:145665998-145666266(-)$1	1	160	166	14.6406
))))))	chr19:11224281-11224528(+)$1	1	191	197	14.2500
......	chr6:44217998-44218204(+)$1	1	29	35	13.5468
)))(((	chr3:119180707-119181026(-)$1	1	181	187	14.5625
(((...	chr19:47769813-47770132(+)$1	1	79	85	14.6406
(.((.(	chr11:57558940-57559195(+)$1	1	25	31	14.5625
.(((((	chr6:43738876-43739150(+)$1	1	133	139	13.5468
(.((..	chrX:153693691-153693952(+)$1	1	133	139	14.2500
)))..)	chr20:61542807-61543071(-)$1	1	248	254	14.6406
).))))	chr22:40754764-40755085(+)$1	1	314	320	14.5625
).))))	chr11:65348441-65348693(+)$1	1	180	186	14.5625
))))))	chr21:47746271-47746552(+)$1	1	155	161	14.5625
))))).	chr20:62339900-62340162(+)$1	1	47	53	14.6406
..((((	chr16:9185803-9186090(+)$1	1	98	104	14.2500
(.((.(	chr17:27074137-27074409(+)$1	1	22	28	14.5625
.)))))	chr5:139905727-139906002(+)$1	1	96	102	14.2500
(((.((	chr1:39815091-39815400(+)$1	1	94	100	14.6406
(((((.	chr12:121125161-121125463(+)$1	1	101	107	14.5625
))).))	chr11:71189340-71189628(+)$1	1	124	130	14.6406
......	chr12:6878997-6879265(+)$1	1	135	141	14.2500
..))))	chr17:25636183-25636399(+)$1	1	30	36	14.2500
))))..	chr19:12790176-12790444(-)$1	1	24	30	14.6406
..))))	chr7:140624234-140624488(-)$1	1	51	57	14.2500
((((((	chr4:142154865-142155332(+)$1	1	30	36	14.6406

#PSSM
C : 0.32	G : 0.31	A : 0.21	U : 0.10	a : 0.03	
U : 0.96	u : 0.03	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	

#score	921.53125
#seq	64
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_transcript_m2_run2.nuc.txt

#NT
UUUUGUUUUU	chr15:63837616-63837909(+)$1	293	157	167	19.0909
uuuuaauuua	chr8:103337722-103338037(-)$1	315	131	141	18.0681
UUUCAUUUUA	chr4:160109214-160109521(+)$1	307	49	59	17.8409
UUUUGUUUUG	chr2:191762580-191762918(+)$1	338	281	291	18.5227
uuuuauuuuu	chr5:137328272-137328605(-)$1	333	304	314	22.4999
uuguauuuuc	chr14:31065654-31065960(+)$1	306	14	24	18.1818
UUUUAUUCUU	chr14:23033730-23034006(-)$1	276	219	229	17.9545
UUUUAUUUUA	chr5:138651241-138651459(+)$1	218	108	118	22.4999
UUCUAUUUUU	chr7:12381839-12382107(-)$1	268	109	119	18.8636
UUUUAUAUUG	chrX:133597796-133598080(+)$1	284	24	34	17.2727
uuuuauucua	chr8:48963970-48964297(+)$1	327	146	156	17.9545
UUGUAUUUUC	chr1:114520116-114520417(+)$1	301	225	235	18.1818
AUUUAUUUUG	chr17:40402188-40402496(-)$1	308	46	56	17.7272
ucuuauuuug	chr5:64770670-64770967(-)$1	297	163	173	17.2727
UUUUCUUUUC	chr12:112663989-112664253(-)$1	264	45	55	18.0681
UUUAAuuuua	chr3:20006026-20006277(+)$1	251	86	96	17.8409
UUGUAUUUUU	chr3:48014435-48014727(-)$1	292	52	62	18.9772
UUUUGUUUUG	chr18:746342-746615(-)$1	273	35	45	18.5227
uuuuauuuuc	chr3:47764544-47764869(-)$1	325	147	157	21.7045
uucuauuuug	chr20:21336419-21336694(+)$1	275	79	89	18.2954
UUGUAUUUUA	chr6:45307721-45308002(-)$1	281	71	81	18.9772
UUUUAUUUUA	chr3:160125562-160125793(+)$1	231	129	139	22.4999
uuuuauuuua	chr3:15781889-15782178(-)$1	289	94	104	22.4999
uuuuauuuuc	chr21:45295995-45296276(+)$1	281	85	95	21.7045
uuuuuuuuuu	chr19:893457-893666(+)$1	209	128	138	19.0909
UUUUGUUUUG	chrX:20228360-20228630(-)$1	270	219	229	18.5227
uuuuuuuuuu	chr6:73575890-73576149(+)$1	259	85	95	19.0909
UUUUCUUUUC	chr15:63356289-63356564(+)$1	275	252	262	18.0681
UUUUACUUUU	chr8:124802063-124802340(+)$1	277	102	112	17.9545
uuauauuuua	chr2:71637508-71637825(+)$1	317	232	242	18.7499
UUUUUUUUUA	chr20:33068934-33069259(+)$1	325	230	240	19.0909
UUUUAAUUUG	chr9:75774530-75774824(+)$1	294	51	61	17.4999
GUUUAUUUUA	chr3:180689366-180689605(+)$1	239	163	173	18.2954
uuuuauuuua	chr13:114116565-114116837(-)$1	272	229	239	22.4999
UUCUAUUUUG	chr3:152115368-152115682(+)$1	314	294	304	18.2954
CUUUAUUUUU	chr8:62586534-62586797(-)$1	263	239	249	18.1818
UUUUAUCUUA	chr17:29537841-29538117(+)$1	276	205	215	17.8409
UUUUAUUUUA	chr12:25057599-25057908(-)$1	309	244	254	22.4999
UUUUUUUUUU	chr3:183464572-183464877(+)$1	305	124	134	19.0909
auuuauuuuc	chr16:23897149-23897387(+)$1	238	186	196	17.4999
uuuuauuugu	chr5:78932061-78932304(+)$1	243	148	158	17.7272
UUAUAUUUUU	chr1:212246846-212247149(+)$1	303	241	251	18.7499
uauuauuuuu	chr8:124056895-124057155(+)$1	260	165	175	17.8409

#otherMatches

#Struct PSSM
CLLLFFFFFF	chr2:10762356-10762717(-)$1	361	75	85	18.2954
cc[eeeee++	chr15:63837616-63837909(+)$1	293	157	167	19.0909
iiiiiiirrr	chr8:103337722-103338037(-)$1	315	131	141	18.0681
eeeffffff#	chr4:160109214-160109521(+)$1	307	49	59	17.8409
fffffflllf	chr2:191762580-191762918(+)$1	338	281	291	18.5227
>>>>>>>>>>	chr5:137328272-137328605(-)$1	333	304	314	22.4999
:dddd[bbmm	chr14:31065654-31065960(+)$1	306	14	24	18.1818
::::::::::	chr14:23033730-23034006(-)$1	276	219	229	17.9545
hFFFFFF}HH	chr5:138651241-138651459(+)$1	218	108	118	22.4999
ggggffffff	chr7:12381839-12382107(-)$1	268	109	119	18.8636
mmmdddd444	chrX:133597796-133598080(+)$1	284	24	34	17.2727
eeeeelllee	chr8:48963970-48964297(+)$1	327	146	156	17.9545
FFFF::::::	chr1:114520116-114520417(+)$1	301	225	235	18.1818
nnnn======	chr17:40402188-40402496(-)$1	308	46	56	17.7272
HHHHHHHDDD	chr5:64770670-64770967(-)$1	297	163	173	17.2727
++++++++++	chr12:112663989-112664253(-)$1	264	45	55	18.0681
::::::::::	chr3:20006026-20006277(+)$1	251	86	96	17.8409
EEEE{DDDDK	chr3:48014435-48014727(-)$1	292	52	62	18.9772
^^^^^^^^^^	chr18:746342-746615(-)$1	273	35	45	18.5227
::::::::::	chr3:47764544-47764869(-)$1	325	147	157	21.7045
vvvvvvvvve	chr20:21336419-21336694(+)$1	275	79	89	18.2954
:::ggggggg	chr6:45307721-45308002(-)$1	281	71	81	18.9772
qqqqqqqqhh	chr3:160125562-160125793(+)$1	231	129	139	22.4999
::::::::::	chr3:15781889-15782178(-)$1	289	94	104	22.4999
::::::::::	chr21:45295995-45296276(+)$1	281	85	95	21.7045
eeee::::::	chr19:893457-893666(+)$1	209	128	138	19.0909
==========	chrX:20228360-20228630(-)$1	270	219	229	18.5227
[ddddyyyyy	chr6:73575890-73576149(+)$1	259	85	95	19.0909
##ddddmmmm	chr15:63356289-63356564(+)$1	275	252	262	18.0681
!=========	chr8:124802063-124802340(+)$1	277	102	112	17.9545
dddnnnnndd	chr2:71637508-71637825(+)$1	317	232	242	18.7499
lleeeee22e	chr20:33068934-33069259(+)$1	325	230	240	19.0909
>>>>>>>>>>	chr9:75774530-75774824(+)$1	294	51	61	17.4999
ggggg%%%%%	chr3:180689366-180689605(+)$1	239	163	173	18.2954
::::::::::	chr13:114116565-114116837(-)$1	272	229	239	22.4999
eeeee:::::	chr3:152115368-152115682(+)$1	314	294	304	18.2954
EEEEE:::::	chr8:62586534-62586797(-)$1	263	239	249	18.1818
JYYCCCZZZC	chr17:29537841-29538117(+)$1	276	205	215	17.8409
]ccc:::::H	chr12:25057599-25057908(-)$1	309	244	254	22.4999
::::::::::	chr3:183464572-183464877(+)$1	305	124	134	19.0909
f>>>>>>>>>	chr16:23897149-23897387(+)$1	238	186	196	17.4999
eeeppppppp	chr5:78932061-78932304(+)$1	243	148	158	17.7272
Jhhhhhhhht	chr1:212246846-212247149(+)$1	303	241	251	18.7499
$ffffff!!=	chr8:124056895-124057155(+)$1	260	165	175	17.8409

#DB
(...((((((	chr2:10762356-10762717(-)$1	1	75	85	18.2954
((.(((((..	chr15:63837616-63837909(+)$1	1	157	167	19.0909
(((((((...	chr8:103337722-103338037(-)$1	1	131	141	18.0681
)))((((((.	chr4:160109214-160109521(+)$1	1	49	59	17.8409
((((((...)	chr2:191762580-191762918(+)$1	1	281	291	18.5227
..........	chr5:137328272-137328605(-)$1	1	304	314	22.4999
.((((.((..	chr14:31065654-31065960(+)$1	1	14	24	18.1818
..........	chr14:23033730-23034006(-)$1	1	219	229	17.9545
))))))).))	chr5:138651241-138651459(+)$1	1	108	118	22.4999
((((((((((	chr7:12381839-12382107(-)$1	1	109	119	18.8636
...))))...	chrX:133597796-133598080(+)$1	1	24	34	17.2727
(((((...))	chr8:48963970-48964297(+)$1	1	146	156	17.9545
))))......	chr1:114520116-114520417(+)$1	1	225	235	18.1818
....))))))	chr17:40402188-40402496(-)$1	1	46	56	17.7272
))))))))))	chr5:64770670-64770967(-)$1	1	163	173	17.2727
..........	chr12:112663989-112664253(-)$1	1	45	55	18.0681
..........	chr3:20006026-20006277(+)$1	1	86	96	17.8409
((((.((((.	chr3:48014435-48014727(-)$1	1	52	62	18.9772
..........	chr18:746342-746615(-)$1	1	35	45	18.5227
..........	chr3:47764544-47764869(-)$1	1	147	157	21.7045
.........)	chr20:21336419-21336694(+)$1	1	79	89	18.2954
...(((((((	chr6:45307721-45308002(-)$1	1	71	81	18.9772
........))	chr3:160125562-160125793(+)$1	1	129	139	22.4999
..........	chr3:15781889-15782178(-)$1	1	94	104	22.4999
..........	chr21:45295995-45296276(+)$1	1	85	95	21.7045
))))......	chr19:893457-893666(+)$1	1	128	138	19.0909
))))))))))	chrX:20228360-20228630(-)$1	1	219	229	18.5227
.((((.....	chr6:73575890-73576149(+)$1	1	85	95	19.0909
..((((....	chr15:63356289-63356564(+)$1	1	252	262	18.0681
.(((((((((	chr8:124802063-124802340(+)$1	1	102	112	17.9545
(((.....))	chr2:71637508-71637825(+)$1	1	232	242	18.7499
..)))))..)	chr20:33068934-33069259(+)$1	1	230	240	19.0909
..........	chr9:75774530-75774824(+)$1	1	51	61	17.4999
(((((.....	chr3:180689366-180689605(+)$1	1	163	173	18.2954
..........	chr13:114116565-114116837(-)$1	1	229	239	22.4999
))))).....	chr3:152115368-152115682(+)$1	1	294	304	18.2954
))))).....	chr8:62586534-62586797(-)$1	1	239	249	18.1818
)..)))...)	chr17:29537841-29538117(+)$1	1	205	215	17.8409
.))).....)	chr12:25057599-25057908(-)$1	1	244	254	22.4999
..........	chr3:183464572-183464877(+)$1	1	124	134	19.0909
).........	chr16:23897149-23897387(+)$1	1	186	196	17.4999
(((.......	chr5:78932061-78932304(+)$1	1	148	158	17.7272
)((((((((.	chr1:212246846-212247149(+)$1	1	241	251	18.7499
.((((((..(	chr8:124056895-124057155(+)$1	1	165	175	17.8409

#PSSM
U : 0.54	u : 0.34	G : 0.04	A : 0.02	C : 0.02	a : 0.02	
U : 0.63	u : 0.31	c : 0.02	a : 0.02	
U : 0.49	u : 0.29	G : 0.06	C : 0.04	g : 0.02	c : 0.02	a : 0.02	A : 0.02	
U : 0.59	u : 0.36	C : 0.02	A : 0.02	
A : 0.45	a : 0.31	G : 0.09	C : 0.04	u : 0.04	U : 0.04	
U : 0.56	u : 0.36	a : 0.02	C : 0.02	A : 0.02	
U : 0.56	u : 0.38	A : 0.02	C : 0.02	
U : 0.59	u : 0.36	C : 0.02	c : 0.02	
U : 0.61	u : 0.36	g : 0.02	
U : 0.20	A : 0.18	G : 0.15	a : 0.13	u : 0.11	c : 0.09	C : 0.06	g : 0.04	

#score	835.9090909090905
#seq	44
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_transcript_m1_run1.nuc.txt

#NT
UUUCUUCUCUCCUUUUU	chr13:52528908-52529221(-)$1	313	113	130	19.0612
ucucuuuucuuuuuuuu	chr1:151587745-151588049(+)$1	304	79	96	26.1020
Uuucuuuucuucuucuu	chr3:60232961-60233274(-)$1	313	80	97	24.8775
uuccucuucuuccucuu	chr2:198761818-198762097(+)$1	279	117	134	22.6326
UUACUCUUCUUUCUGUU	chrX:73496513-73496890(-)$1	377	108	125	24.3673
UCUCUUUUCUCUUUGUG	chrX:73047356-73047577(-)$1	221	72	89	19.8775
uuucuuuuguuuguuuc	chr7:129722777-129723035(+)$1	258	40	57	24.6734
uuucuucucucucucCU	chr16:58054443-58054817(+)$1	374	229	246	21.1020
cuucucuucuuucucug	chr6:135325886-135326147(-)$1	261	100	117	23.5510
uuucuuuuuauucugcc	chr3:178893429-178893666(+)$1	237	10	27	19.8775
UUUAUCUUCUGUCUCUU	chr7:127004604-127004849(-)$1	245	14	31	22.2244
ucucuuuuauuucuguu	chr3:196881616-196881952(-)$1	336	176	193	23.6530
uuucuuuucugucucac	chr10:97897283-97897619(+)$1	336	109	126	23.4489
uuucuguucucccucuc	chr12:72237699-72238069(+)$1	370	72	89	21.6122
uuccuuuucauucuucu	chr10:135224927-135225199(+)$1	272	204	221	22.3265
CUUCUUAUUUUUCUCUU	chr1:143378760-143379029(-)$1	269	185	202	20.2857
uuucuuuucuuucuuuu	chr9:134291410-134291653(+)$1	243	78	95	32.4285
ucucucuuucuucuuua	chrX:122785268-122785534(-)$1	266	108	125	18.3469
uuucuuuucuugccucg	chr1:201961099-201961324(+)$1	225	75	92	19.3673
uuuuucuUCUUUCAUUC	chrX:154457908-154458162(+)$1	254	79	96	21.5102
uuucuuuuuucucuuuc	chr18:72369801-72370097(+)$1	296	96	113	26.4081
ugucuauuuuugcuuuu	chr3:25696413-25696698(-)$1	285	155	172	19.1632
uucuuuuucauucuuuu	chr7:107173892-107174150(-)$1	258	72	89	22.3265
uuccuuuucauucuuuu	chr12:62735810-62736087(+)$1	277	75	92	26.0000
uuccucuucauucuuuu	chrX:67748912-67749181(+)$1	269	102	119	23.6530
uuuguuuucucucauua	chr2:15480906-15481195(-)$1	289	90	107	19.8775
uuucuuuucuuucuuuc	chr17:49128176-49128463(-)$1	287	91	108	31.8163
UCUCUUUUCUCUUUGUG	chrX:73047380-73047655(-)$1	275	150	167	19.8775
uucauuuucuuucuccc	chr7:110923235-110923544(-)$1	309	39	56	20.4897
cuucuuuuucuucuuuc	chr1:156171350-156171633(+)$1	283	116	133	21.4081
uuuguuuucuugguuuc	chr8:92015918-92016200(-)$1	282	84	101	21.2040
uuuaucuuuuuucuuuu	chr6:127625862-127626140(-)$1	278	104	121	23.5510
UCUCUCUUCUUUUUCUU	chr8:126189921-126190206(+)$1	285	149	166	22.8367
auucuuuuucaucuuug	chr4:48404792-48405133(+)$1	341	58	75	16.9183
uuucuuuuuacucuuuu	chr2:228409787-228410063(+)$1	276	82	99	23.6530
UGUCUUUUAUUUAUCUU	chr10:121353610-121353908(-)$1	298	34	51	20.8979
guuccuuucucucuuuc	chr1:65741217-65741495(+)$1	278	124	141	20.4897
auucuuuucuuucucuu	chr6:110503732-110504134(+)$1	402	136	153	27.5306
auuguuuucuuuauuuc	chr8:130534254-130534502(-)$1	248	37	54	20.7959
uuuccucucuuucucuc	chr2:168764340-168764621(-)$1	281	106	123	22.1224
UUCCUCUUCUUCAUUUC	chr2:168764065-168764320(-)$1	255	178	195	19.4693
UUUGUGUUCUUUGUCUU	chr7:75102113-75102393(-)$1	280	80	97	21.2040
UUACUAUUCUCUCUCUU	chrX:109390735-109390991(+)$1	256	87	104	22.0204
uuucuugccuuuccuuu	chr16:10540726-10541022(+)$1	296	28	45	19.2653
UUCCUUUUCUGUCCUUC	chr7:128458943-128459274(+)$1	331	76	93	21.3061
uaucuuuucuugcucug	chr1:160222076-160222341(-)$1	265	89	106	22.5306
ucucuuuccuuacuuuc	chr3:167428508-167428775(-)$1	267	91	108	20.1836
uguuuuuuccuucucug	chr8:26172206-26172473(+)$1	267	111	128	19.0612

#otherMatches

#Struct PSSM
e[bbssssssssssbb2	chr2:48597430-48597734(+)$1	304	109	126	19.9795
e[ccc[awwwwwwwwww	chr13:52528908-52529221(-)$1	313	113	130	19.0612
=========++++++++	chr1:151587745-151588049(+)$1	304	79	96	26.1020
333gggggggbb:::::	chr3:60232961-60233274(-)$1	313	80	97	24.8775
::::::::::::::::F	chr2:198761818-198762097(+)$1	279	117	134	22.6326
^^^^^^^^^^^^^^ddd	chrX:73496513-73496890(-)$1	377	108	125	24.3673
$ccc))))))))))eee	chrX:73047356-73047577(-)$1	221	72	89	19.8775
nnnffffff::::::::	chr7:129722777-129723035(+)$1	258	40	57	24.6734
^^^^^^^^^^^^^^^^^	chr16:58054443-58054817(+)$1	374	229	246	21.1020
cxxxxxxxxxxxxxxxc	chr6:135325886-135326147(-)$1	261	100	117	23.5510
:::::::::::::::::	chr3:178893429-178893666(+)$1	237	10	27	19.8775
++++++++ccc))))))	chr7:127004604-127004849(-)$1	245	14	31	22.2244
fff::::::::ddddnn	chr3:196881616-196881952(-)$1	336	176	193	23.6530
22bb55555ccc:::::	chr10:97897283-97897619(+)$1	336	109	126	23.4489
:::cccssssssssssc	chr12:72237699-72238069(+)$1	370	72	89	21.6122
c::::::::::::::::	chr10:135224927-135225199(+)$1	272	204	221	22.3265
cczzzzzzzzzzzzzzz	chr1:143378760-143379029(-)$1	269	185	202	20.2857
:::::::::::::::::	chr9:134291410-134291653(+)$1	243	78	95	32.4285
oooccc:::::::::::	chrX:122785268-122785534(-)$1	266	108	125	18.3469
::::::dddd[dddd[b	chr1:201961099-201961324(+)$1	225	75	92	19.3673
::::::::::::eeeee	chrX:154457908-154458162(+)$1	254	79	96	21.5102
::::::eeeee"""fff	chr18:72369801-72370097(+)$1	296	96	113	26.4081
:::::::::::gggggg	chr3:25696413-25696698(-)$1	285	155	172	19.1632
:::::::::::::::::	chr7:107173892-107174150(-)$1	258	72	89	22.3265
:::::::::::::::::	chr12:62735810-62736087(+)$1	277	75	92	26.0000
:::::::::::::::::	chrX:67748912-67749181(+)$1	269	102	119	23.6530
ooccc::::::::::::	chr2:15480906-15481195(-)$1	289	90	107	19.8775
:::::::::::::::::	chr17:49128176-49128463(-)$1	287	91	108	31.8163
$ccc))))))))))eee	chrX:73047380-73047655(-)$1	275	150	167	19.8775
:::::::::::::::EE	chr7:110923235-110923544(-)$1	309	39	56	20.4897
:::::::::::::::::	chr1:156171350-156171633(+)$1	283	116	133	21.4081
dd]ggggggg]bb333e	chr8:92015918-92016200(-)$1	282	84	101	21.2040
:::::::::::::::::	chr6:127625862-127626140(-)$1	278	104	121	23.5510
+++++++++++++++++	chr8:126189921-126190206(+)$1	285	149	166	22.8367
JJJJJJJJJJJ:::::d	chr4:48404792-48405133(+)$1	341	58	75	16.9183
:::::::::::::::::	chr2:228409787-228410063(+)$1	276	82	99	23.6530
^^^^^^^^^^^^^eeee	chr10:121353610-121353908(-)$1	298	34	51	20.8979
d::::::::::::::::	chr1:65741217-65741495(+)$1	278	124	141	20.4897
:::::::::::::::::	chr6:110503732-110504134(+)$1	402	136	153	27.5306
:::::::::::::::::	chr8:130534254-130534502(-)$1	248	37	54	20.7959
:::::::::::::::::	chr2:168764340-168764621(-)$1	281	106	123	22.1224
JJJJJJ}EEEEE:::::	chr2:168764065-168764320(-)$1	255	178	195	19.4693
!!eeeee####bb[a[g	chr7:75102113-75102393(-)$1	280	80	97	21.2040
:::::::::::::::::	chrX:109390735-109390991(+)$1	256	87	104	22.0204
mmccc]bb>>>>>>>>>	chr16:10540726-10541022(+)$1	296	28	45	19.2653
bbbb22ffffff:::::	chr7:128458943-128459274(+)$1	331	76	93	21.3061
>>>>>>>bb]dddd]dd	chr1:160222076-160222341(-)$1	265	89	106	22.5306
::::::::::::::::f	chr3:167428508-167428775(-)$1	267	91	108	20.1836
bb22ccc7777777ddd	chr8:26172206-26172473(+)$1	267	111	128	19.0612

#DB
(.((..........)).	chr2:48597430-48597734(+)$1	1	109	126	19.9795
(.(((.(..........	chr13:52528908-52529221(-)$1	1	113	130	19.0612
(((((((((........	chr1:151587745-151588049(+)$1	1	79	96	26.1020
...))))))))).....	chr3:60232961-60233274(-)$1	1	80	97	24.8775
................(	chr2:198761818-198762097(+)$1	1	117	134	22.6326
..............)))	chrX:73496513-73496890(-)$1	1	108	125	24.3673
.(((..........(((	chrX:73047356-73047577(-)$1	1	72	89	19.8775
...))))))........	chr7:129722777-129723035(+)$1	1	40	57	24.6734
.................	chr16:58054443-58054817(+)$1	1	229	246	21.1020
(...............)	chr6:135325886-135326147(-)$1	1	100	117	23.5510
.................	chr3:178893429-178893666(+)$1	1	10	27	19.8775
........(((......	chr7:127004604-127004849(-)$1	1	14	31	22.2244
)))........((((..	chr3:196881616-196881952(-)$1	1	176	193	23.6530
..)).....))).....	chr10:97897283-97897619(+)$1	1	109	126	23.4489
...(((..........)	chr12:72237699-72238069(+)$1	1	72	89	21.6122
)................	chr10:135224927-135225199(+)$1	1	204	221	22.3265
((...............	chr1:143378760-143379029(-)$1	1	185	202	20.2857
.................	chr9:134291410-134291653(+)$1	1	78	95	32.4285
...)))...........	chrX:122785268-122785534(-)$1	1	108	125	18.3469
......((((.((((.(	chr1:201961099-201961324(+)$1	1	75	92	19.3673
............(((((	chrX:154457908-154458162(+)$1	1	79	96	21.5102
......(((((...(((	chr18:72369801-72370097(+)$1	1	96	113	26.4081
...........((((((	chr3:25696413-25696698(-)$1	1	155	172	19.1632
.................	chr7:107173892-107174150(-)$1	1	72	89	22.3265
.................	chr12:62735810-62736087(+)$1	1	75	92	26.0000
.................	chrX:67748912-67749181(+)$1	1	102	119	23.6530
..)))............	chr2:15480906-15481195(-)$1	1	90	107	19.8775
.................	chr17:49128176-49128463(-)$1	1	91	108	31.8163
.(((..........(((	chrX:73047380-73047655(-)$1	1	150	167	19.8775
...............((	chr7:110923235-110923544(-)$1	1	39	56	20.4897
.................	chr1:156171350-156171633(+)$1	1	116	133	21.4081
)).))))))).))...)	chr8:92015918-92016200(-)$1	1	84	101	21.2040
.................	chr6:127625862-127626140(-)$1	1	104	121	23.5510
.................	chr8:126189921-126190206(+)$1	1	149	166	22.8367
))))))))))).....(	chr4:48404792-48405133(+)$1	1	58	75	16.9183
.................	chr2:228409787-228410063(+)$1	1	82	99	23.6530
.............))))	chr10:121353610-121353908(-)$1	1	34	51	20.8979
)................	chr1:65741217-65741495(+)$1	1	124	141	20.4897
.................	chr6:110503732-110504134(+)$1	1	136	153	27.5306
.................	chr8:130534254-130534502(-)$1	1	37	54	20.7959
.................	chr2:168764340-168764621(-)$1	1	106	123	22.1224
)))))).))))).....	chr2:168764065-168764320(-)$1	1	178	195	19.4693
..(((((....((.(.(	chr7:75102113-75102393(-)$1	1	80	97	21.2040
.................	chrX:109390735-109390991(+)$1	1	87	104	22.0204
..))).)).........	chr16:10540726-10541022(+)$1	1	28	45	19.2653
))))..)))))).....	chr7:128458943-128459274(+)$1	1	76	93	21.3061
.......)).)))).))	chr1:160222076-160222341(-)$1	1	89	106	22.5306
................(	chr3:167428508-167428775(-)$1	1	91	108	20.1836
))..))).......)))	chr8:26172206-26172473(+)$1	1	111	128	19.0612

#PSSM
u : 0.61	U : 0.24	a : 0.06	c : 0.04	C : 0.02	g : 0.02	
u : 0.61	U : 0.16	c : 0.08	C : 0.06	g : 0.04	G : 0.02	a : 0.02	
u : 0.61	U : 0.16	c : 0.12	A : 0.04	C : 0.04	g : 0.02	
c : 0.59	C : 0.20	u : 0.06	g : 0.06	a : 0.04	A : 0.02	G : 0.02	
u : 0.71	U : 0.24	c : 0.04	
u : 0.57	c : 0.14	U : 0.12	C : 0.08	g : 0.02	a : 0.02	G : 0.02	A : 0.02	
u : 0.69	U : 0.20	c : 0.04	C : 0.02	A : 0.02	g : 0.02	
u : 0.69	U : 0.26	c : 0.04	
c : 0.53	C : 0.22	u : 0.16	g : 0.02	a : 0.02	U : 0.02	A : 0.02	
u : 0.53	U : 0.26	a : 0.12	c : 0.08	
u : 0.57	U : 0.14	c : 0.12	C : 0.08	G : 0.04	g : 0.02	a : 0.02	
u : 0.57	U : 0.22	g : 0.08	c : 0.06	C : 0.04	a : 0.02	
c : 0.63	C : 0.12	U : 0.08	u : 0.04	g : 0.04	A : 0.04	a : 0.02	G : 0.02	
u : 0.67	U : 0.22	c : 0.04	A : 0.02	a : 0.02	C : 0.02	
u : 0.44	c : 0.22	C : 0.12	U : 0.08	g : 0.06	G : 0.06	
u : 0.59	U : 0.26	c : 0.10	C : 0.02	a : 0.02	
c : 0.28	u : 0.28	U : 0.18	g : 0.10	C : 0.06	G : 0.04	a : 0.04	

#score	1087.367346938776
#seq	49
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_CDS_m2_run1.nuc.txt

#NT
gaugaagg	chr9:100777553-100777784(+)$1	231	139	147	16.1875
AAUGAAUG	chr11:18425147-18425352(+)$1	205	109	117	17.9583
AAUGAAUG	chr11:18425152-18425357(+)$1	205	104	112	17.9583
GAUGAAUG	chrX:100297155-100297459(-)$1	304	95	103	19.7291
GAUGAAUG	chr11:5443278-5443570(-)$1	292	144	152	19.7291
AAUGAAUG	chr14:69861441-69861663(-)$1	222	106	114	17.9583
AAUGAAUG	chr7:50444242-50444493(+)$1	251	43	51	17.9583
AAUGAAUG	chr7:50444218-50444442(+)$1	224	67	75	17.9583
GAUGAGUG	chr5:132412482-132412691(+)$1	209	27	35	15.8750
GAUGAAUG	chr12:120959929-120960241(-)$1	312	115	123	19.7291
GAUGAAAG	chr17:76117682-76117980(-)$1	298	33	41	16.1875
GAUGAACG	chr8:101724873-101725117(-)$1	244	111	119	15.9791
AAUGAAUG	chr1:185267250-185267513(-)$1	263	167	175	17.9583
AAUGAAUG	chr15:72509677-72509889(-)$1	212	97	105	17.9583
GAUGAAGG	chr9:100774602-100774805(+)$1	203	145	153	16.1875
GCUGAAUG	chr12:50410311-50410598(-)$1	287	114	122	15.1458
UAUGAAUG	chr10:38344278-38344531(+)$1	253	94	102	17.1250
GAUGAAUG	chr2:55462533-55462792(+)$1	259	78	86	19.7291
GAUGAAAG	chr8:101725235-101725444(-)$1	209	64	72	16.1875
AAUGAAUG	chr15:72509647-72509877(-)$1	230	85	93	17.9583
GAUGCAUG	chr8:141745340-141745657(-)$1	317	125	133	15.2500
GAUGAAUG	chr3:183898841-183899107(+)$1	266	110	118	19.7291
GAUGGAUG	chr15:91503025-91503328(+)$1	303	50	58	15.3541
CAUGAAUG	chr4:71889200-71889478(+)$1	278	111	119	17.0208
AAUGAAUG	chr7:50444164-50444418(+)$1	254	121	129	17.9583
gaugaagg	chr9:100777545-100777748(+)$1	203	147	155	16.1875
GAUGAAAG	chr8:101725216-101725432(-)$1	216	52	60	16.1875
GAUGAAUG	chr19:8553566-8553867(+)$1	301	111	119	19.7291
GAUGUAUG	chr1:44445565-44445866(+)$1	301	113	121	15.2500
aaugaaug	chr1:22161407-22161661(-)$1	254	113	121	17.9583
GAUGAGUG	chr5:132412454-132412682(+)$1	228	55	63	15.8750
GAUGAACG	chr1:202715196-202715549(-)$1	353	143	151	15.9791
GAUGAGUG	chr7:72863842-72864111(-)$1	269	118	126	15.8750
GAUGAGUG	chr11:64846431-64846684(-)$1	253	37	45	15.8750
AAUGAAUG	chr11:18425157-18425431(+)$1	274	99	107	17.9583
GAUGACUG	chr6:99853816-99854146(-)$1	330	209	217	15.4583
GAUGGAUG	chr20:57473776-57474101(+)$1	325	86	94	15.3541
caugaaug	chr11:47379875-47380255(-)$1	380	274	282	17.0208
gaugaagg	chr9:100777584-100777802(+)$1	218	108	116	16.1875
UAUGAAUG	chr19:36727719-36727989(+)$1	270	172	180	17.1250
UAUGAAUG	chr19:36727795-36728048(+)$1	253	96	104	17.1250
GAUGAGUG	chr11:64846484-64846736(-)$1	252	89	97	15.8750
GAUGAAUG	chr12:56553656-56553901(+)$1	245	103	111	19.7291
AAUGAAUG	chr11:18425142-18425347(+)$1	205	114	122	17.9583
GAUGAAAG	chr2:232326149-232326392(-)$1	243	50	58	16.1875
CAUGAAUG	chr1:76254755-76255051(+)$1	296	214	222	17.0208
UAUGAAUG	chr10:43088913-43089166(-)$1	253	89	97	17.1250

#otherMatches

#Struct PSSM
[bb%%%%%	chr11:67018063-67018383(+)$1	320	68	76	15.1458
!dddd[a[	chr9:100777553-100777784(+)$1	231	139	147	16.1875
++++++++	chr11:18425147-18425352(+)$1	205	109	117	17.9583
++++++++	chr11:18425152-18425357(+)$1	205	104	112	17.9583
dd[a!!dd	chrX:100297155-100297459(-)$1	304	95	103	19.7291
c:eeeee[	chr11:5443278-5443570(-)$1	292	144	152	19.7291
e22bb]dd	chr14:69861441-69861663(-)$1	222	106	114	17.9583
pppppeee	chr7:50444242-50444493(+)$1	251	43	51	17.9583
pppppeee	chr7:50444218-50444442(+)$1	224	67	75	17.9583
rreeeee4	chr5:132412482-132412691(+)$1	209	27	35	15.8750
dddd"""c	chr12:120959929-120960241(-)$1	312	115	123	19.7291
::ddddgg	chr17:76117682-76117980(-)$1	298	33	41	16.1875
dd::::::	chr8:101724873-101725117(-)$1	244	111	119	15.9791
hhhhhddd	chr1:185267250-185267513(-)$1	263	167	175	17.9583
44a]eeee	chr15:72509677-72509889(-)$1	212	97	105	17.9583
cttttttt	chr9:100774602-100774805(+)$1	203	145	153	16.1875
KKCCC::e	chr12:50410311-50410598(-)$1	287	114	122	15.1458
d]bb22dd	chr10:38344278-38344531(+)$1	253	94	102	17.1250
gggggg]d	chr2:55462533-55462792(+)$1	259	78	86	19.7291
::a[eeee	chr8:101725235-101725444(-)$1	209	64	72	16.1875
44a]eeee	chr15:72509647-72509877(-)$1	230	85	93	17.9583
cc]bb]==	chr8:141745340-141745657(-)$1	317	125	133	15.2500
g:a[gggg	chr3:183898841-183899107(+)$1	266	110	118	19.7291
::::::::	chr15:91503025-91503328(+)$1	303	50	58	15.3541
ee]eeeee	chr4:71889200-71889478(+)$1	278	111	119	17.0208
pppppeee	chr7:50444164-50444418(+)$1	254	121	129	17.9583
EEEE}EEE	chr9:100777545-100777748(+)$1	203	147	155	16.1875
!!a[eeee	chr8:101725216-101725432(-)$1	216	52	60	16.1875
rrrrrree	chr19:8553566-8553867(+)$1	301	111	119	19.7291
rrrrrrrd	chr1:44445565-44445866(+)$1	301	113	121	15.2500
!!dddd[b	chr1:22161407-22161661(-)$1	254	113	121	17.9583
[eeeee[c	chr5:132412454-132412682(+)$1	228	55	63	15.8750
[dddd$$$	chr1:202715196-202715549(-)$1	353	143	151	15.9791
ff22eeee	chr7:72863842-72864111(-)$1	269	118	126	15.8750
cc]ccc::	chr11:64846431-64846684(-)$1	253	37	45	15.8750
''''''dd	chr11:18425157-18425431(+)$1	274	99	107	17.9583
3bb]dddd	chr6:99853816-99854146(-)$1	330	209	217	15.4583
uuuuuuuu	chr20:57473776-57474101(+)$1	325	86	94	15.3541
EEddddnn	chr11:47379875-47380255(-)$1	380	274	282	17.0208
!dddd[a[	chr9:100777584-100777802(+)$1	218	108	116	16.1875
22gggggg	chr19:36727719-36727989(+)$1	270	172	180	17.1250
(((((ddd	chr19:36727795-36728048(+)$1	253	96	104	17.1250
b]gggggg	chr11:64846484-64846736(-)$1	252	89	97	15.8750
a22ccccc	chr12:56553656-56553901(+)$1	245	103	111	19.7291
FFFF::dd	chr11:18425142-18425347(+)$1	205	114	122	17.9583
!!bbmmmm	chr2:232326149-232326392(-)$1	243	50	58	16.1875
bbmmmmbb	chr1:76254755-76255051(+)$1	296	214	222	17.0208
d]bb22dd	chr10:43088913-43089166(-)$1	253	89	97	17.1250

#DB
.((.....	chr11:67018063-67018383(+)$1	1	68	76	15.1458
.((((.(.	chr9:100777553-100777784(+)$1	1	139	147	16.1875
........	chr11:18425147-18425352(+)$1	1	109	117	17.9583
........	chr11:18425152-18425357(+)$1	1	104	112	17.9583
((.(..((	chrX:100297155-100297459(-)$1	1	95	103	19.7291
).(((((.	chr11:5443278-5443570(-)$1	1	144	152	19.7291
)..)).))	chr14:69861441-69861663(-)$1	1	106	114	17.9583
.....)))	chr7:50444242-50444493(+)$1	1	43	51	17.9583
.....)))	chr7:50444218-50444442(+)$1	1	67	75	17.9583
..))))).	chr5:132412482-132412691(+)$1	1	27	35	15.8750
((((...(	chr12:120959929-120960241(-)$1	1	115	123	19.7291
..((((((	chr17:76117682-76117980(-)$1	1	33	41	16.1875
))......	chr8:101724873-101725117(-)$1	1	111	119	15.9791
))))))))	chr1:185267250-185267513(-)$1	1	167	175	17.9583
..).))))	chr15:72509677-72509889(-)$1	1	97	105	17.9583
(.......	chr9:100774602-100774805(+)$1	1	145	153	16.1875
..(((..(	chr12:50410311-50410598(-)$1	1	114	122	15.1458
).))..))	chr10:38344278-38344531(+)$1	1	94	102	17.1250
)))))).)	chr2:55462533-55462792(+)$1	1	78	86	19.7291
..(.((((	chr8:101725235-101725444(-)$1	1	64	72	16.1875
..).))))	chr15:72509647-72509877(-)$1	1	85	93	17.9583
)).)).))	chr8:141745340-141745657(-)$1	1	125	133	15.2500
).(.((((	chr3:183898841-183899107(+)$1	1	110	118	19.7291
........	chr15:91503025-91503328(+)$1	1	50	58	15.3541
)).)))))	chr4:71889200-71889478(+)$1	1	111	119	17.0208
.....)))	chr7:50444164-50444418(+)$1	1	121	129	17.9583
)))).)))	chr9:100777545-100777748(+)$1	1	147	155	16.1875
..(.((((	chr8:101725216-101725432(-)$1	1	52	60	16.1875
......))	chr19:8553566-8553867(+)$1	1	111	119	19.7291
.......)	chr1:44445565-44445866(+)$1	1	113	121	15.2500
..((((.(	chr1:22161407-22161661(-)$1	1	113	121	17.9583
.(((((.(	chr5:132412454-132412682(+)$1	1	55	63	15.8750
.((((...	chr1:202715196-202715549(-)$1	1	143	151	15.9791
))..))))	chr7:72863842-72864111(-)$1	1	118	126	15.8750
)).)))..	chr11:64846431-64846684(-)$1	1	37	45	15.8750
......((	chr11:18425157-18425431(+)$1	1	99	107	17.9583
.)).))))	chr6:99853816-99854146(-)$1	1	209	217	15.4583
........	chr20:57473776-57474101(+)$1	1	86	94	15.3541
((((((..	chr11:47379875-47380255(-)$1	1	274	282	17.0208
.((((.(.	chr9:100777584-100777802(+)$1	1	108	116	16.1875
..))))))	chr19:36727719-36727989(+)$1	1	172	180	17.1250
.....(((	chr19:36727795-36728048(+)$1	1	96	104	17.1250
).))))))	chr11:64846484-64846736(-)$1	1	89	97	15.8750
)..)))))	chr12:56553656-56553901(+)$1	1	103	111	19.7291
))))..((	chr11:18425142-18425347(+)$1	1	114	122	17.9583
..((....	chr2:232326149-232326392(-)$1	1	50	58	16.1875
((....))	chr1:76254755-76255051(+)$1	1	214	222	17.0208
).))..))	chr10:43088913-43089166(-)$1	1	89	97	17.1250

#PSSM
G : 0.54	A : 0.22	U : 0.08	g : 0.06	C : 0.04	a : 0.02	c : 0.02	
A : 0.85	a : 0.10	C : 0.04	
U : 0.89	u : 0.10	
G : 0.89	g : 0.10	
A : 0.81	a : 0.10	G : 0.04	C : 0.02	U : 0.02	
A : 0.77	a : 0.10	G : 0.10	C : 0.02	
U : 0.75	A : 0.08	g : 0.06	C : 0.04	u : 0.04	G : 0.02	
G : 0.89	g : 0.10	

#score	820.9583333333337
#seq	48
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_CDS_m3_run1.nuc.txt

#NT
UGUUG	chr7:104753068-104753344(-)$1	276	21	26	15.0000
UGUUG	chr7:6075119-6075377(-)$1	258	115	120	15.0000
UGUUG	chr15:28508123-28508384(-)$1	261	37	42	15.0000
UGUUG	chr21:46281077-46281311(-)$1	234	86	91	15.0000
UGUUG	chr7:104752495-104752757(-)$1	262	243	248	15.0000
UGUUG	chr17:29631938-29632178(+)$1	240	176	181	15.0000
UGUUG	chr7:104752960-104753191(-)$1	231	39	44	15.0000
UGUUG	chr7:6074940-6075205(-)$1	265	48	53	15.0000
UGUUG	chr17:29622089-29622383(+)$1	294	73	78	15.0000
UGUUG	chr17:29623081-29623317(+)$1	236	3	8	15.0000
UGUUG	chrX:41193696-41193954(+)$1	258	12	17	15.0000
UGUUG	chr7:6071032-6071277(-)$1	245	72	77	15.0000
UGUUG	chr5:137688299-137688597(+)$1	298	55	60	15.0000
UGUUG	chr7:104752407-104752657(-)$1	250	143	148	15.0000
UGUUG	chr17:29622629-29622937(+)$1	308	119	124	15.0000
UGUUG	chr17:29632280-29632538(+)$1	258	4	9	15.0000
UGUUG	chr7:104752833-104753078(-)$1	245	139	144	15.0000
UGUUG	chr15:28508184-28508421(-)$1	237	74	79	15.0000
UGUUG	chr7:104753296-104753543(-)$1	247	220	225	15.0000
UGUUG	chr7:6075250-6075476(-)$1	226	214	219	15.0000
UGUUG	chr7:6071077-6071356(-)$1	279	151	156	15.0000
UGUUG	chr17:29632338-29632613(+)$1	275	43	48	15.0000
UGUUG	chr20:30947459-30947681(+)$1	222	13	18	15.0000
UGUUG	chr17:29632440-29632688(+)$1	248	7	12	15.0000
UGUUG	chr17:29623014-29623268(+)$1	254	4	9	15.0000
UGUUG	chr21:46281537-46281788(-)$1	251	186	191	15.0000
UGUUG	chr3:99567346-99567589(+)$1	243	104	109	15.0000
UGUUG	chr7:104752274-104752544(-)$1	270	30	35	15.0000
UGUUG	chr17:29622563-29622811(+)$1	248	185	190	15.0000
UGUUG	chr17:29632043-29632288(+)$1	245	71	76	15.0000
UGUUG	chr3:99549283-99549558(+)$1	275	3	8	15.0000
UGUUG	chr17:29631605-29631859(+)$1	254	47	52	15.0000
UGUUG	chr7:104752577-104752880(-)$1	303	67	72	15.0000
UGUUG	chr7:104752927-104753160(-)$1	233	8	13	15.0000
UGUUG	chr17:29622217-29622487(+)$1	270	4	9	15.0000
UGUUG	chr17:29632117-29632359(+)$1	242	64	69	15.0000
UGUUG	chr17:29632020-29632243(+)$1	223	94	99	15.0000
uguug	chr17:6829459-6829708(-)$1	249	66	71	15.0000
uguug	chr12:72255091-72255351(+)$1	260	162	167	15.0000

#otherMatches

#Struct PSSM
ppppp	chr7:6075005-6075275(-)$1	270	13	18	15.0000
e[ddd	chr7:104753068-104753344(-)$1	276	21	26	15.0000
&&&&c	chr7:6075119-6075377(-)$1	258	115	120	15.0000
eeee[	chr15:28508123-28508384(-)$1	261	37	42	15.0000
eeee4	chr21:46281077-46281311(-)$1	234	86	91	15.0000
}EEEE	chr7:104752495-104752757(-)$1	262	243	248	15.0000
HHHHH	chr17:29631938-29632178(+)$1	240	176	181	15.0000
[ccc[	chr7:104752960-104753191(-)$1	231	39	44	15.0000
:DDDD	chr7:6074940-6075205(-)$1	265	48	53	15.0000
JJJJ{	chr17:29622089-29622383(+)$1	294	73	78	15.0000
FFFFQ	chr17:29623081-29623317(+)$1	236	3	8	15.0000
::::d	chrX:41193696-41193954(+)$1	258	12	17	15.0000
ffffc	chr7:6071032-6071277(-)$1	245	72	77	15.0000
GGGGG	chr5:137688299-137688597(+)$1	298	55	60	15.0000
h$$$$	chr7:104752407-104752657(-)$1	250	143	148	15.0000
GGKKE	chr17:29622629-29622937(+)$1	308	119	124	15.0000
JJJJJ	chr17:29632280-29632538(+)$1	258	4	9	15.0000
a!!cc	chr7:104752833-104753078(-)$1	245	139	144	15.0000
eeee[	chr15:28508184-28508421(-)$1	237	74	79	15.0000
hhhhh	chr7:104753296-104753543(-)$1	247	220	225	15.0000
JJJJJ	chr7:6075250-6075476(-)$1	226	214	219	15.0000
ee22e	chr7:6071077-6071356(-)$1	279	151	156	15.0000
:eeee	chr17:29632338-29632613(+)$1	275	43	48	15.0000
=====	chr20:30947459-30947681(+)$1	222	13	18	15.0000
=====	chr17:29632440-29632688(+)$1	248	7	12	15.0000
ggggg	chr17:29623014-29623268(+)$1	254	4	9	15.0000
dqqqq	chr21:46281537-46281788(-)$1	251	186	191	15.0000
[iiii	chr3:99567346-99567589(+)$1	243	104	109	15.0000
h$$$$	chr7:104752274-104752544(-)$1	270	30	35	15.0000
HHYYC	chr17:29622563-29622811(+)$1	248	185	190	15.0000
bdddd	chr17:29632043-29632288(+)$1	245	71	76	15.0000
FFFFf	chr3:99549283-99549558(+)$1	275	3	8	15.0000
ggggg	chr17:29631605-29631859(+)$1	254	47	52	15.0000
ubbdd	chr7:104752577-104752880(-)$1	303	67	72	15.0000
CCC:e	chr7:104752927-104753160(-)$1	233	8	13	15.0000
GGG:g	chr17:29622217-29622487(+)$1	270	4	9	15.0000
====]	chr17:29632117-29632359(+)$1	242	64	69	15.0000
dddd:	chr17:29632020-29632243(+)$1	223	94	99	15.0000
!eeee	chr17:6829459-6829708(-)$1	249	66	71	15.0000
ooo==	chr12:72255091-72255351(+)$1	260	162	167	15.0000

#DB
.....	chr7:6075005-6075275(-)$1	1	13	18	15.0000
(.(((	chr7:104753068-104753344(-)$1	1	21	26	15.0000
....(	chr7:6075119-6075377(-)$1	1	115	120	15.0000
((((.	chr15:28508123-28508384(-)$1	1	37	42	15.0000
)))).	chr21:46281077-46281311(-)$1	1	86	91	15.0000
.))))	chr7:104752495-104752757(-)$1	1	243	248	15.0000
)))))	chr17:29631938-29632178(+)$1	1	176	181	15.0000
.(((.	chr7:104752960-104753191(-)$1	1	39	44	15.0000
.((((	chr7:6074940-6075205(-)$1	1	48	53	15.0000
((((.	chr17:29622089-29622383(+)$1	1	73	78	15.0000
((((.	chr17:29623081-29623317(+)$1	1	3	8	15.0000
....(	chrX:41193696-41193954(+)$1	1	12	17	15.0000
(((((	chr7:6071032-6071277(-)$1	1	72	77	15.0000
(((((	chr5:137688299-137688597(+)$1	1	55	60	15.0000
(....	chr7:104752407-104752657(-)$1	1	143	148	15.0000
((..(	chr17:29622629-29622937(+)$1	1	119	124	15.0000
(((((	chr17:29632280-29632538(+)$1	1	4	9	15.0000
(..((	chr7:104752833-104753078(-)$1	1	139	144	15.0000
((((.	chr15:28508184-28508421(-)$1	1	74	79	15.0000
)))))	chr7:104753296-104753543(-)$1	1	220	225	15.0000
)))))	chr7:6075250-6075476(-)$1	1	214	219	15.0000
))..)	chr7:6071077-6071356(-)$1	1	151	156	15.0000
.((((	chr17:29632338-29632613(+)$1	1	43	48	15.0000
(((((	chr20:30947459-30947681(+)$1	1	13	18	15.0000
(((((	chr17:29632440-29632688(+)$1	1	7	12	15.0000
(((((	chr17:29623014-29623268(+)$1	1	4	9	15.0000
(....	chr21:46281537-46281788(-)$1	1	186	191	15.0000
.((((	chr3:99567346-99567589(+)$1	1	104	109	15.0000
(....	chr7:104752274-104752544(-)$1	1	30	35	15.0000
))..)	chr17:29622563-29622811(+)$1	1	185	190	15.0000
)((((	chr17:29632043-29632288(+)$1	1	71	76	15.0000
(((((	chr3:99549283-99549558(+)$1	1	3	8	15.0000
)))))	chr17:29631605-29631859(+)$1	1	47	52	15.0000
.))))	chr7:104752577-104752880(-)$1	1	67	72	15.0000
(((.(	chr7:104752927-104753160(-)$1	1	8	13	15.0000
(((.(	chr17:29622217-29622487(+)$1	1	4	9	15.0000
)))).	chr17:29632117-29632359(+)$1	1	64	69	15.0000
)))).	chr17:29632020-29632243(+)$1	1	94	99	15.0000
.((((	chr17:6829459-6829708(-)$1	1	66	71	15.0000
...))	chr12:72255091-72255351(+)$1	1	162	167	15.0000

#PSSM
U : 0.95	u : 0.05	
G : 0.95	g : 0.05	
U : 0.95	u : 0.05	
U : 0.95	u : 0.05	
G : 0.95	g : 0.05	

#score	600.0000000000001
#seq	40
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_UTR_m2_run2.nuc.txt

#NT
UGGGCUGGGGG	chr19:41770950-41771210(+)$1	260	165	176	17.6875
UGGGCGGGCGG	chr15:66084357-66084614(-)$1	257	97	108	22.7916
agggcuggcgg	chr2:97535530-97535849(-)$1	319	130	141	19.4583
GGGGUGGGUGG	chr20:60709738-60709992(+)$1	254	87	98	18.1041
Agggcgggcgc	chr7:111202339-111202601(-)$1	262	88	99	18.8333
cgggcggcggg	chr9:131102838-131103147(+)$1	309	105	116	18.1041
GGGGCGGCCGG	chr1:161102118-161102391(-)$1	273	61	72	19.8750
GCGGCGGGCGG	chr3:15901025-15901347(-)$1	322	5	16	19.6666
agggcaggggg	chr7:27153331-27153581(-)$1	250	49	60	17.3750
GGGGCGGGGGG	chr16:30958840-30959077(+)$1	237	88	99	22.4791
CGGGCGGUCGG	chr19:46367578-46367860(+)$1	282	20	31	19.5625
GGGGCUGGAGG	chr2:55646731-55646994(-)$1	263	156	167	18.1041
cgggcgggcgg	chr7:77166704-77166946(+)$1	242	105	116	23.8333
AGGGCUGGGGG	chr14:23778319-23778604(+)$1	285	95	106	17.8958
CAGGCGGGCGG	chr11:2154323-2154530(-)$1	207	9	20	19.3541
CGGGCGGGCGG	chr1:201437991-201438328(-)$1	337	92	103	23.8333
cgggcgagcgg	chr14:23790888-23791160(+)$1	272	207	218	19.1458
Ugggcgggcgc	chr16:68298385-68298674(+)$1	289	110	121	18.6250
ggggUGGGGGG	chr2:230786502-230786762(-)$1	260	95	106	19.2500
AGGGCGGGCGG	chr5:92920309-92920551(+)$1	242	174	185	23.0000
ggggUGGGGGG	chr2:230786612-230786875(-)$1	263	208	219	19.2500
UGGGCGGGGGG	chr15:93426504-93426821(+)$1	317	157	168	21.2291
GGGGCGGGGUG	chr13:115000296-115000565(+)$1	269	189	200	17.6875
CGGGCGGGAGG	chr6:15248979-15249266(+)$1	287	57	68	21.4375
CGGGAGGGCGG	chr14:35873036-35873342(-)$1	306	109	120	20.2916
ggggugggggg	chr1:155947809-155948063(-)$1	254	80	91	19.2500
GGGGCGGGGGC	chr19:47987247-47987562(-)$1	315	107	118	18.3125
AGGGCUGGCGG	chr17:79991717-79992022(+)$1	305	10	21	19.4583
CGGGAGGGAGG	chr8:41787591-41787870(-)$1	279	104	115	17.8958
GGGGCGCGCGG	chr1:87380268-87380567(+)$1	299	69	80	19.3541
GGGGCGGGCGG	chr16:22019381-22019661(+)$1	280	14	25	24.0416
GGGGCUGGGGG	chr17:7590374-7590686(-)$1	312	74	85	18.9375
GGGGAGGGUGG	chr3:196074547-196074824(-)$1	277	85	96	17.7916
CGGGCGGGAGG	chr17:4850616-4850844(-)$1	228	58	69	21.4375
Agggcgggcgc	chr7:111202226-111202513(-)$1	287	0	11	18.8333
CGGGUGGGAGG	chr14:24911341-24911620(-)$1	279	89	100	18.2083
cgggcgggcgg	chr15:64752892-64753142(+)$1	250	105	116	23.8333
AGGGUGGGGGG	chr19:44126955-44127219(-)$1	264	90	101	18.2083
GGGGCGGGCGG	chr16:57220334-57220617(+)$1	283	137	148	24.0416
CGGGGGGGCGG	chr5:154135159-154135412(+)$1	253	139	150	20.1875
CGGGCGGUCGG	chr12:124457853-124458145(+)$1	292	264	275	19.5625
UGUGCGGGCGG	chr19:35491133-35491396(+)$1	263	97	108	18.0000
GGGGCGGCCGG	chr3:100428823-100429077(+)$1	254	116	127	19.8750
cggGCGGGCGG	chr11:18034135-18034438(-)$1	303	104	115	23.8333
CUGGCGGGCGG	chr11:93474392-93474662(-)$1	270	207	218	19.3541
UGGGGGGGCGG	chr8:74884212-74884474(-)$1	262	90	101	19.1458
gcggcgggcgg	chr2:183902830-183903078(-)$1	248	8	19	19.6666

#otherMatches

#Struct PSSM
!eeeee[dddd	chr12:8025189-8025497(-)$1	308	12	23	19.9791
oooffffff]d	chr19:41770950-41771210(+)$1	260	165	176	17.6875
eeooooooeee	chr15:66084357-66084614(-)$1	257	97	108	22.7916
$$$ccc[ccco	chr2:97535530-97535849(-)$1	319	130	141	19.4583
GGGGG{CCCEE	chr20:60709738-60709992(+)$1	254	87	98	18.1041
bb:FFFFFF}D	chr7:111202339-111202601(-)$1	262	88	99	18.8333
====ggggggg	chr9:131102838-131103147(+)$1	309	105	116	18.1041
ccccc]dddd2	chr1:161102118-161102391(-)$1	273	61	72	19.8750
FFFFF{CCC{C	chr3:15901025-15901347(-)$1	322	5	16	19.6666
ggggggg22cc	chr7:27153331-27153581(-)$1	250	49	60	17.3750
:::bbnnnnnb	chr16:30958840-30959077(+)$1	237	88	99	22.4791
HHHBB::dddd	chr19:46367578-46367860(+)$1	282	20	31	19.5625
gggggg:::::	chr2:55646731-55646994(-)$1	263	156	167	18.1041
b!!ccc!!a[c	chr7:77166704-77166946(+)$1	242	105	116	23.8333
hhhhhhhdddd	chr14:23778319-23778604(+)$1	285	95	106	17.8958
IIIIIIIIIbb	chr11:2154323-2154530(-)$1	207	9	20	19.3541
VVGGGGGGG{C	chr1:201437991-201438328(-)$1	337	92	103	23.8333
fff]bb]bb]c	chr14:23790888-23791160(+)$1	272	207	218	19.1458
ccc]a]ddddh	chr16:68298385-68298674(+)$1	289	110	121	18.6250
bb[dddd[bb!	chr2:230786502-230786762(-)$1	260	95	106	19.2500
YYJJJJJJJJJ	chr5:92920309-92920551(+)$1	242	174	185	23.0000
bb[dddd[bb!	chr2:230786612-230786875(-)$1	263	208	219	19.2500
CCgggggggnn	chr15:93426504-93426821(+)$1	317	157	168	21.2291
[ddddnnnnnd	chr13:115000296-115000565(+)$1	269	189	200	17.6875
dd[bb[cccll	chr6:15248979-15249266(+)$1	287	57	68	21.4375
oooobb22ggg	chr14:35873036-35873342(-)$1	306	109	120	20.2916
:::::::::a!	chr1:155947809-155948063(-)$1	254	80	91	19.2500
c[cccmmmmcc	chr19:47987247-47987562(-)$1	315	107	118	18.3125
gggggggqqqq	chr17:79991717-79992022(+)$1	305	10	21	19.4583
ccc:HHHHHHH	chr8:41787591-41787870(-)$1	279	104	115	17.8958
qqeeeeeBB}F	chr1:87380268-87380567(+)$1	299	69	80	19.3541
LDDDDa[dddd	chr16:22019381-22019661(+)$1	280	14	25	24.0416
===========	chr17:7590374-7590686(-)$1	312	74	85	18.9375
cc4444dddd]	chr3:196074547-196074824(-)$1	277	85	96	17.7916
gqqqqqqqqgg	chr17:4850616-4850844(-)$1	228	58	69	21.4375
::a[ggggggg	chr7:111202226-111202513(-)$1	287	0	11	18.8333
]ffffff:eee	chr14:24911341-24911620(-)$1	279	89	100	18.2083
ff!!cccbb[a	chr15:64752892-64753142(+)$1	250	105	116	23.8333
ddd]ccc::BB	chr19:44126955-44127219(-)$1	264	90	101	18.2083
~~~~EEEEEYY	chr16:57220334-57220617(+)$1	283	137	148	24.0416
lleeeee]iii	chr5:154135159-154135412(+)$1	253	139	150	20.1875
ZZDDDD}BBJJ	chr12:124457853-124458145(+)$1	292	264	275	19.5625
dddd[ddddee	chr19:35491133-35491396(+)$1	263	97	108	18.0000
!eeeeennnnn	chr3:100428823-100429077(+)$1	254	116	127	19.8750
C{DDDD:gggg	chr11:18034135-18034438(-)$1	303	104	115	23.8333
EEccc[hhhhh	chr11:93474392-93474662(-)$1	270	207	218	19.3541
JJJJJJJhhhh	chr8:74884212-74884474(-)$1	262	90	101	19.1458
HHHHHHHbb##	chr2:183902830-183903078(-)$1	248	8	19	19.6666

#DB
.(((((.((((	chr12:8025189-8025497(-)$1	1	12	23	19.9791
...)))))).)	chr19:41770950-41771210(+)$1	1	165	176	17.6875
((......)))	chr15:66084357-66084614(-)$1	1	97	108	22.7916
...(((.(((.	chr2:97535530-97535849(-)$1	1	130	141	19.4583
(((((.(((((	chr20:60709738-60709992(+)$1	1	87	98	18.1041
)).)))))).)	chr7:111202339-111202601(-)$1	1	88	99	18.8333
(((((((((((	chr9:131102838-131103147(+)$1	1	105	116	18.1041
))))).)))).	chr1:161102118-161102391(-)$1	1	61	72	19.8750
(((((.(((.(	chr3:15901025-15901347(-)$1	1	5	16	19.6666
)))))))..))	chr7:27153331-27153581(-)$1	1	49	60	17.3750
...((.....)	chr16:30958840-30959077(+)$1	1	88	99	22.4791
(((((..((((	chr19:46367578-46367860(+)$1	1	20	31	19.5625
)))))).....	chr2:55646731-55646994(-)$1	1	156	167	18.1041
(..(((..(.(	chr7:77166704-77166946(+)$1	1	105	116	23.8333
(((((((((((	chr14:23778319-23778604(+)$1	1	95	106	17.8958
(((((((((((	chr11:2154323-2154530(-)$1	1	9	20	19.3541
..(((((((.(	chr1:201437991-201438328(-)$1	1	92	103	23.8333
))).)).)).)	chr14:23790888-23791160(+)$1	1	207	218	19.1458
))).).)))))	chr16:68298385-68298674(+)$1	1	110	121	18.6250
((.((((.((.	chr2:230786502-230786762(-)$1	1	95	106	19.2500
..)))))))))	chr5:92920309-92920551(+)$1	1	174	185	23.0000
((.((((.((.	chr2:230786612-230786875(-)$1	1	208	219	19.2500
))(((((((..	chr15:93426504-93426821(+)$1	1	157	168	21.2291
.((((.....)	chr13:115000296-115000565(+)$1	1	189	200	17.6875
((.((.(((..	chr6:15248979-15249266(+)$1	1	57	68	21.4375
....))..)))	chr14:35873036-35873342(-)$1	1	109	120	20.2916
.........(.	chr1:155947809-155948063(-)$1	1	80	91	19.2500
(.(((....))	chr19:47987247-47987562(-)$1	1	107	118	18.3125
(((((((....	chr17:79991717-79992022(+)$1	1	10	21	19.4583
))).(((((((	chr8:41787591-41787870(-)$1	1	104	115	17.8958
..))))))).)	chr1:87380268-87380567(+)$1	1	69	80	19.3541
.(((((.((((	chr16:22019381-22019661(+)$1	1	14	25	24.0416
)))))))))))	chr17:7590374-7590686(-)$1	1	74	85	18.9375
))....)))).	chr3:196074547-196074824(-)$1	1	85	96	17.7916
(........))	chr17:4850616-4850844(-)$1	1	58	69	21.4375
..(.(((((((	chr7:111202226-111202513(-)$1	1	0	11	18.8333
.)))))).(((	chr14:24911341-24911620(-)$1	1	89	100	18.2083
((..(((((.(	chr15:64752892-64753142(+)$1	1	105	116	23.8333
))).)))..((	chr19:44126955-44127219(-)$1	1	90	101	18.2083
....)))))..	chr16:57220334-57220617(+)$1	1	137	148	24.0416
..))))).)))	chr5:154135159-154135412(+)$1	1	139	150	20.1875
..)))).))))	chr12:124457853-124458145(+)$1	1	264	275	19.5625
((((.((((((	chr19:35491133-35491396(+)$1	1	97	108	18.0000
.(((((.....	chr3:100428823-100429077(+)$1	1	116	127	19.8750
(.((((.((((	chr11:18034135-18034438(-)$1	1	104	115	23.8333
))(((.(((((	chr11:93474392-93474662(-)$1	1	207	218	19.3541
(((((((((((	chr8:74884212-74884474(-)$1	1	90	101	19.1458
(((((((((..	chr2:183902830-183903078(-)$1	1	8	19	19.6666

#PSSM
G : 0.27	C : 0.22	U : 0.12	A : 0.12	g : 0.10	c : 0.10	a : 0.04	
G : 0.62	g : 0.29	C : 0.02	A : 0.02	U : 0.02	c : 0.02	
G : 0.66	g : 0.31	U : 0.02	
G : 0.70	g : 0.29	
C : 0.54	c : 0.22	U : 0.10	A : 0.06	G : 0.04	u : 0.02	
G : 0.64	g : 0.18	U : 0.10	c : 0.02	u : 0.02	a : 0.02	
G : 0.72	g : 0.22	a : 0.02	C : 0.02	
G : 0.66	g : 0.22	C : 0.04	U : 0.04	c : 0.02	
C : 0.39	G : 0.20	c : 0.18	A : 0.10	g : 0.06	U : 0.04	
G : 0.72	g : 0.25	U : 0.02	
G : 0.72	g : 0.18	c : 0.06	C : 0.02	

#score	956.0833333333334
#seq	48
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_CDS_m1_run2.nuc.txt

#NT
AGU	chr3:30713133-30713363(+)$1	230	27	30	9.0000
AGU	chr3:183896573-183896783(+)$1	210	80	83	9.0000
AGU	chr12:56486720-56486947(+)$1	227	64	67	9.0000
AGU	chr11:2154680-2154886(-)$1	206	39	42	9.0000
AGU	chr12:125397937-125398157(-)$1	220	30	33	9.0000
AGU	chr12:6645842-6646056(+)$1	214	113	116	9.0000
AGU	chr16:2013088-2013327(-)$1	239	25	28	9.0000
AGU	chr17:73259468-73259689(+)$1	221	187	190	9.0000
AGU	chr15:69745935-69746149(+)$1	214	143	146	9.0000
AGU	chr3:53260790-53260994(-)$1	204	51	54	9.0000
AGU	chrX:153628840-153629061(+)$1	221	33	36	9.0000
AGU	chr6:26188948-26189194(-)$1	246	60	63	9.0000
AGU	chr11:62291145-62291389(-)$1	244	25	28	9.0000
AGU	chr10:7769603-7769815(+)$1	212	183	186	9.0000
AGU	chr11:2154678-2154880(-)$1	202	33	36	9.0000
AGU	chr1:92149278-92149510(-)$1	232	118	121	9.0000
AGU	chr12:6646170-6646379(+)$1	209	9	12	9.0000
AGU	chr19:42373107-42373331(+)$1	224	112	115	9.0000
AGU	chr20:47605824-47606071(+)$1	247	5	8	9.0000
AGU	chr3:53262990-53263213(-)$1	223	112	115	9.0000
AGU	chr20:60962607-60962821(+)$1	214	25	28	9.0000
AGU	chr17:4906813-4907074(+)$1	261	96	99	9.0000
AGU	chr11:2154348-2154553(-)$1	205	8	11	9.0000
AGU	chr6:133137502-133137707(+)$1	205	5	8	9.0000
AGU	chrX:71494802-71495026(-)$1	224	0	3	9.0000
AGU	chr8:99054847-99055066(-)$1	219	7	10	9.0000
AGU	chrX:71494826-71495040(-)$1	214	14	17	9.0000
AGU	chr15:99467011-99467248(+)$1	237	32	35	9.0000
AGU	chr2:85823915-85824148(+)$1	233	35	38	9.0000
AGU	chr12:57537401-57537638(+)$1	237	187	190	9.0000
AGU	chr5:135382440-135382652(+)$1	212	30	33	9.0000
AGU	chr3:53261971-53262177(-)$1	206	127	130	9.0000
AGU	chr4:109543570-109543792(+)$1	222	120	123	9.0000
AGU	chr22:42070795-42071068(-)$1	273	106	109	9.0000
AGU	chr11:2154725-2154930(-)$1	205	83	86	9.0000
AGU	chr12:125396168-125396418(-)$1	250	115	118	9.0000
AGU	chr10:98312699-98312916(-)$1	217	156	159	9.0000
AGU	chr12:56481299-56481524(+)$1	225	220	223	9.0000
AGU	chr9:131339428-131339652(+)$1	224	20	23	9.0000
AGU	chr11:122931277-122931538(-)$1	261	5	8	9.0000
AGU	chr21:34804939-34805157(+)$1	218	100	103	9.0000
AGU	chr11:8706318-8706536(+)$1	218	49	52	9.0000
AGU	chr15:69745899-69746121(+)$1	222	15	18	9.0000
AGU	chr6:133135811-133136015(+)$1	204	18	21	9.0000
AGU	chr12:57593580-57593785(+)$1	205	13	16	9.0000
AGU	chr17:75205322-75205570(+)$1	248	5	8	9.0000
AGU	chr11:17098634-17098858(-)$1	224	63	66	9.0000
AGU	chr11:2156617-2156824(-)$1	207	90	93	9.0000
AGU	chr3:124484973-124485209(-)$1	236	15	18	9.0000
AGU	chr19:18974248-18974521(+)$1	273	132	135	9.0000
AGU	chr1:54670661-54670972(+)$1	311	62	65	9.0000
AGU	chr8:145533092-145533366(+)$1	274	61	64	9.0000
AGU	chr1:92262850-92263109(-)$1	259	0	3	9.0000
AGU	chr12:120636296-120636525(-)$1	229	15	18	9.0000
AGU	chr21:34804957-34805213(+)$1	256	82	85	9.0000
AGU	chr6:133137507-133137719(+)$1	212	0	3	9.0000
AGU	chr11:2156501-2156705(-)$1	204	36	39	9.0000
AGU	chr11:2154300-2154504(-)$1	204	79	82	9.0000
AGU	chr10:120828924-120829184(-)$1	260	85	88	9.0000
AGU	chr12:57603463-57603679(+)$1	216	16	19	9.0000
AGU	chr6:142730910-142731155(+)$1	245	102	105	9.0000
AGU	chr9:130212970-130213180(-)$1	210	95	98	9.0000
AGU	chr11:2154686-2154891(-)$1	205	44	47	9.0000
AGU	chr11:17098666-17098876(-)$1	210	81	84	9.0000
AGU	chr16:66967461-66967708(-)$1	247	81	84	9.0000
AGU	chr15:99478117-99478334(+)$1	217	26	29	9.0000
AGU	chr4:1019014-1019288(+)$1	274	11	14	9.0000
AGU	chr20:34776197-34776477(+)$1	280	191	194	9.0000
AGU	chr20:3578465-3578722(+)$1	257	54	57	9.0000
AGU	chr11:2156609-2156813(-)$1	204	79	82	9.0000
AGU	chr11:61732132-61732339(-)$1	207	123	126	9.0000
AGU	chr12:1006654-1006916(+)$1	262	18	21	9.0000
AGU	chr1:45243678-45243887(+)$1	209	83	86	9.0000
AGU	chr6:33240352-33240580(+)$1	228	9	12	9.0000
AGU	chr1:161192063-161192269(-)$1	206	70	73	9.0000
AGU	chr1:39847579-39847911(+)$1	332	110	113	9.0000
AGU	chr16:84118522-84118808(-)$1	286	174	177	9.0000
AGU	chr3:50357463-50357688(-)$1	225	141	144	9.0000
AGU	chr11:2156519-2156723(-)$1	204	54	57	9.0000
AGU	chr11:2154738-2154944(-)$1	206	5	8	9.0000
AGU	chr11:61732125-61732332(-)$1	207	116	119	9.0000
AGU	chr16:2013053-2013265(-)$1	212	73	76	9.0000
AGU	chr1:10434927-10435202(+)$1	275	33	36	9.0000
AGU	chr2:32800141-32800371(+)$1	230	79	82	9.0000
AGU	chr19:39923915-39924134(-)$1	219	23	26	9.0000
AGU	chr12:120636856-120637091(-)$1	235	13	16	9.0000
AGU	chr11:62286357-62286623(-)$1	266	15	18	9.0000
AGU	chr19:39924100-39924309(-)$1	209	8	11	9.0000
AGU	chr19:18420504-18420756(-)$1	252	56	59	9.0000
AGU	chr11:8706267-8706518(+)$1	251	18	21	9.0000
AGU	chr9:130210586-130210800(-)$1	214	96	99	9.0000
AGU	chr11:2154200-2154402(-)$1	202	4	7	9.0000
AGU	chr11:8707204-8707457(+)$1	253	31	34	9.0000
AGU	chr19:10930555-10930862(+)$1	307	52	55	9.0000
AGU	chr7:98565057-98565367(+)$1	310	12	15	9.0000
AGU	chr2:21234633-21234842(-)$1	209	14	17	9.0000
AGU	chr5:180663939-180664142(-)$1	203	43	46	9.0000
AGU	chr11:2154752-2154956(-)$1	204	17	20	9.0000
AGU	chr11:62286276-62286523(-)$1	247	87	90	9.0000

#otherMatches

#Struct PSSM
ddd	chr1:153947048-153947335(-)$1	287	62	65	9.0000
:ee	chr3:30713133-30713363(+)$1	230	27	30	9.0000
{EE	chr3:183896573-183896783(+)$1	210	80	83	9.0000
cc3	chr12:56486720-56486947(+)$1	227	64	67	9.0000
qqq	chr11:2154680-2154886(-)$1	206	39	42	9.0000
OOC	chr12:125397937-125398157(-)$1	220	30	33	9.0000
qqq	chr12:6645842-6646056(+)$1	214	113	116	9.0000
iio	chr16:2013088-2013327(-)$1	239	25	28	9.0000
}DD	chr17:73259468-73259689(+)$1	221	187	190	9.0000
DDD	chr15:69745935-69746149(+)$1	214	143	146	9.0000
:ff	chr3:53260790-53260994(-)$1	204	51	54	9.0000
eee	chrX:153628840-153629061(+)$1	221	33	36	9.0000
g[c	chr6:26188948-26189194(-)$1	246	60	63	9.0000
:::	chr11:62291145-62291389(-)$1	244	25	28	9.0000
:EE	chr10:7769603-7769815(+)$1	212	183	186	9.0000
qqq	chr11:2154678-2154880(-)$1	202	33	36	9.0000
ncc	chr1:92149278-92149510(-)$1	232	118	121	9.0000
eee	chr12:6646170-6646379(+)$1	209	9	12	9.0000
JJJ	chr19:42373107-42373331(+)$1	224	112	115	9.0000
ccc	chr20:47605824-47606071(+)$1	247	5	8	9.0000
ffb	chr3:53262990-53263213(-)$1	223	112	115	9.0000
{CC	chr20:60962607-60962821(+)$1	214	25	28	9.0000
ff6	chr17:4906813-4907074(+)$1	261	96	99	9.0000
!ee	chr11:2154348-2154553(-)$1	205	8	11	9.0000
:DD	chr6:133137502-133137707(+)$1	205	5	8	9.0000
:::	chrX:71494802-71495026(-)$1	224	0	3	9.0000
FFL	chr8:99054847-99055066(-)$1	219	7	10	9.0000
ggg	chrX:71494826-71495040(-)$1	214	14	17	9.0000
FF:	chr15:99467011-99467248(+)$1	237	32	35	9.0000
EEE	chr2:85823915-85824148(+)$1	233	35	38	9.0000
mmm	chr12:57537401-57537638(+)$1	237	187	190	9.0000
dd[	chr5:135382440-135382652(+)$1	212	30	33	9.0000
[a%	chr3:53261971-53262177(-)$1	206	127	130	9.0000
eee	chr4:109543570-109543792(+)$1	222	120	123	9.0000
ppp	chr22:42070795-42071068(-)$1	273	106	109	9.0000
qqq	chr11:2154725-2154930(-)$1	205	83	86	9.0000
]bb	chr12:125396168-125396418(-)$1	250	115	118	9.0000
dyy	chr10:98312699-98312916(-)$1	217	156	159	9.0000
ddd	chr12:56481299-56481524(+)$1	225	220	223	9.0000
F::	chr9:131339428-131339652(+)$1	224	20	23	9.0000
:GG	chr11:122931277-122931538(-)$1	261	5	8	9.0000
f&&	chr21:34804939-34805157(+)$1	218	100	103	9.0000
:cc	chr11:8706318-8706536(+)$1	218	49	52	9.0000
eee	chr15:69745899-69746121(+)$1	222	15	18	9.0000
CCC	chr6:133135811-133136015(+)$1	204	18	21	9.0000
DBB	chr12:57593580-57593785(+)$1	205	13	16	9.0000
:::	chr17:75205322-75205570(+)$1	248	5	8	9.0000
mdd	chr11:17098634-17098858(-)$1	224	63	66	9.0000
ddd	chr11:2156617-2156824(-)$1	207	90	93	9.0000
ppp	chr3:124484973-124485209(-)$1	236	15	18	9.0000
iiF	chr19:18974248-18974521(+)$1	273	132	135	9.0000
ccc	chr1:54670661-54670972(+)$1	311	62	65	9.0000
ddd	chr8:145533092-145533366(+)$1	274	61	64	9.0000
:EE	chr1:92262850-92263109(-)$1	259	0	3	9.0000
BB{	chr12:120636296-120636525(-)$1	229	15	18	9.0000
f&&	chr21:34804957-34805213(+)$1	256	82	85	9.0000
:DD	chr6:133137507-133137719(+)$1	212	0	3	9.0000
cc[	chr11:2156501-2156705(-)$1	204	36	39	9.0000
eee	chr11:2154300-2154504(-)$1	204	79	82	9.0000
ggg	chr10:120828924-120829184(-)$1	260	85	88	9.0000
QQQ	chr12:57603463-57603679(+)$1	216	16	19	9.0000
HHH	chr6:142730910-142731155(+)$1	245	102	105	9.0000
[bb	chr9:130212970-130213180(-)$1	210	95	98	9.0000
qqq	chr11:2154686-2154891(-)$1	205	44	47	9.0000
mdd	chr11:17098666-17098876(-)$1	210	81	84	9.0000
ggg	chr16:66967461-66967708(-)$1	247	81	84	9.0000
c]a	chr15:99478117-99478334(+)$1	217	26	29	9.0000
::D	chr4:1019014-1019288(+)$1	274	11	14	9.0000
FFY	chr20:34776197-34776477(+)$1	280	191	194	9.0000
ee0	chr20:3578465-3578722(+)$1	257	54	57	9.0000
ddd	chr11:2156609-2156813(-)$1	204	79	82	9.0000
bb]	chr11:61732132-61732339(-)$1	207	123	126	9.0000
OOO	chr12:1006654-1006916(+)$1	262	18	21	9.0000
ggg	chr1:45243678-45243887(+)$1	209	83	86	9.0000
PPP	chr6:33240352-33240580(+)$1	228	9	12	9.0000
cc]	chr1:161192063-161192269(-)$1	206	70	73	9.0000
(((	chr1:39847579-39847911(+)$1	332	110	113	9.0000
d[b	chr16:84118522-84118808(-)$1	286	174	177	9.0000
22g	chr3:50357463-50357688(-)$1	225	141	144	9.0000
pee	chr11:2156519-2156723(-)$1	204	54	57	9.0000
JJJ	chr11:2154738-2154944(-)$1	206	5	8	9.0000
bb]	chr11:61732125-61732332(-)$1	207	116	119	9.0000
DFF	chr16:2013053-2013265(-)$1	212	73	76	9.0000
llc	chr1:10434927-10435202(+)$1	275	33	36	9.0000
dd"	chr2:32800141-32800371(+)$1	230	79	82	9.0000
ddd	chr19:39923915-39924134(-)$1	219	23	26	9.0000
ggg	chr12:120636856-120637091(-)$1	235	13	16	9.0000
BCC	chr11:62286357-62286623(-)$1	266	15	18	9.0000
ccc	chr19:39924100-39924309(-)$1	209	8	11	9.0000
rrr	chr19:18420504-18420756(-)$1	252	56	59	9.0000
ddd	chr11:8706267-8706518(+)$1	251	18	21	9.0000
fff	chr9:130210586-130210800(-)$1	214	96	99	9.0000
dd#	chr11:2154200-2154402(-)$1	202	4	7	9.0000
hhh	chr11:8707204-8707457(+)$1	253	31	34	9.0000
===	chr19:10930555-10930862(+)$1	307	52	55	9.0000
[cc	chr7:98565057-98565367(+)$1	310	12	15	9.0000
eee	chr2:21234633-21234842(-)$1	209	14	17	9.0000
88e	chr5:180663939-180664142(-)$1	203	43	46	9.0000
JJJ	chr11:2154752-2154956(-)$1	204	17	20	9.0000
22b	chr11:62286276-62286523(-)$1	247	87	90	9.0000

#DB
)))	chr1:153947048-153947335(-)$1	1	62	65	9.0000
.((	chr3:30713133-30713363(+)$1	1	27	30	9.0000
.((	chr3:183896573-183896783(+)$1	1	80	83	9.0000
)).	chr12:56486720-56486947(+)$1	1	64	67	9.0000
...	chr11:2154680-2154886(-)$1	1	39	42	9.0000
..(	chr12:125397937-125398157(-)$1	1	30	33	9.0000
...	chr12:6645842-6646056(+)$1	1	113	116	9.0000
((.	chr16:2013088-2013327(-)$1	1	25	28	9.0000
.))	chr17:73259468-73259689(+)$1	1	187	190	9.0000
)))	chr15:69745935-69746149(+)$1	1	143	146	9.0000
.((	chr3:53260790-53260994(-)$1	1	51	54	9.0000
(((	chrX:153628840-153629061(+)$1	1	33	36	9.0000
(.(	chr6:26188948-26189194(-)$1	1	60	63	9.0000
...	chr11:62291145-62291389(-)$1	1	25	28	9.0000
.))	chr10:7769603-7769815(+)$1	1	183	186	9.0000
...	chr11:2154678-2154880(-)$1	1	33	36	9.0000
.))	chr1:92149278-92149510(-)$1	1	118	121	9.0000
(((	chr12:6646170-6646379(+)$1	1	9	12	9.0000
(((	chr19:42373107-42373331(+)$1	1	112	115	9.0000
(((	chr20:47605824-47606071(+)$1	1	5	8	9.0000
)))	chr3:53262990-53263213(-)$1	1	112	115	9.0000
.((	chr20:60962607-60962821(+)$1	1	25	28	9.0000
)).	chr17:4906813-4907074(+)$1	1	96	99	9.0000
.((	chr11:2154348-2154553(-)$1	1	8	11	9.0000
.((	chr6:133137502-133137707(+)$1	1	5	8	9.0000
...	chrX:71494802-71495026(-)$1	1	0	3	9.0000
((.	chr8:99054847-99055066(-)$1	1	7	10	9.0000
(((	chrX:71494826-71495040(-)$1	1	14	17	9.0000
((.	chr15:99467011-99467248(+)$1	1	32	35	9.0000
(((	chr2:85823915-85824148(+)$1	1	35	38	9.0000
...	chr12:57537401-57537638(+)$1	1	187	190	9.0000
((.	chr5:135382440-135382652(+)$1	1	30	33	9.0000
.(.	chr3:53261971-53262177(-)$1	1	127	130	9.0000
)))	chr4:109543570-109543792(+)$1	1	120	123	9.0000
...	chr22:42070795-42071068(-)$1	1	106	109	9.0000
...	chr11:2154725-2154930(-)$1	1	83	86	9.0000
.))	chr12:125396168-125396418(-)$1	1	115	118	9.0000
(..	chr10:98312699-98312916(-)$1	1	156	159	9.0000
)))	chr12:56481299-56481524(+)$1	1	220	223	9.0000
(..	chr9:131339428-131339652(+)$1	1	20	23	9.0000
.((	chr11:122931277-122931538(-)$1	1	5	8	9.0000
(..	chr21:34804939-34805157(+)$1	1	100	103	9.0000
.((	chr11:8706318-8706536(+)$1	1	49	52	9.0000
)))	chr15:69745899-69746121(+)$1	1	15	18	9.0000
(((	chr6:133135811-133136015(+)$1	1	18	21	9.0000
(((	chr12:57593580-57593785(+)$1	1	13	16	9.0000
...	chr17:75205322-75205570(+)$1	1	5	8	9.0000
.))	chr11:17098634-17098858(-)$1	1	63	66	9.0000
(((	chr11:2156617-2156824(-)$1	1	90	93	9.0000
...	chr3:124484973-124485209(-)$1	1	15	18	9.0000
))(	chr19:18974248-18974521(+)$1	1	132	135	9.0000
)))	chr1:54670661-54670972(+)$1	1	62	65	9.0000
)))	chr8:145533092-145533366(+)$1	1	61	64	9.0000
.((	chr1:92262850-92263109(-)$1	1	0	3	9.0000
((.	chr12:120636296-120636525(-)$1	1	15	18	9.0000
(..	chr21:34804957-34805213(+)$1	1	82	85	9.0000
.((	chr6:133137507-133137719(+)$1	1	0	3	9.0000
((.	chr11:2156501-2156705(-)$1	1	36	39	9.0000
)))	chr11:2154300-2154504(-)$1	1	79	82	9.0000
(((	chr10:120828924-120829184(-)$1	1	85	88	9.0000
...	chr12:57603463-57603679(+)$1	1	16	19	9.0000
(((	chr6:142730910-142731155(+)$1	1	102	105	9.0000
.((	chr9:130212970-130213180(-)$1	1	95	98	9.0000
...	chr11:2154686-2154891(-)$1	1	44	47	9.0000
.))	chr11:17098666-17098876(-)$1	1	81	84	9.0000
)))	chr16:66967461-66967708(-)$1	1	81	84	9.0000
).)	chr15:99478117-99478334(+)$1	1	26	29	9.0000
..(	chr4:1019014-1019288(+)$1	1	11	14	9.0000
)).	chr20:34776197-34776477(+)$1	1	191	194	9.0000
)).	chr20:3578465-3578722(+)$1	1	54	57	9.0000
(((	chr11:2156609-2156813(-)$1	1	79	82	9.0000
)).	chr11:61732132-61732339(-)$1	1	123	126	9.0000
...	chr12:1006654-1006916(+)$1	1	18	21	9.0000
(((	chr1:45243678-45243887(+)$1	1	83	86	9.0000
...	chr6:33240352-33240580(+)$1	1	9	12	9.0000
)).	chr1:161192063-161192269(-)$1	1	70	73	9.0000
...	chr1:39847579-39847911(+)$1	1	110	113	9.0000
(.(	chr16:84118522-84118808(-)$1	1	174	177	9.0000
..)	chr3:50357463-50357688(-)$1	1	141	144	9.0000
.))	chr11:2156519-2156723(-)$1	1	54	57	9.0000
(((	chr11:2154738-2154944(-)$1	1	5	8	9.0000
)).	chr11:61732125-61732332(-)$1	1	116	119	9.0000
(((	chr16:2013053-2013265(-)$1	1	73	76	9.0000
..)	chr1:10434927-10435202(+)$1	1	33	36	9.0000
((.	chr2:32800141-32800371(+)$1	1	79	82	9.0000
(((	chr19:39923915-39924134(-)$1	1	23	26	9.0000
(((	chr12:120636856-120637091(-)$1	1	13	16	9.0000
(((	chr11:62286357-62286623(-)$1	1	15	18	9.0000
(((	chr19:39924100-39924309(-)$1	1	8	11	9.0000
...	chr19:18420504-18420756(-)$1	1	56	59	9.0000
(((	chr11:8706267-8706518(+)$1	1	18	21	9.0000
)))	chr9:130210586-130210800(-)$1	1	96	99	9.0000
((.	chr11:2154200-2154402(-)$1	1	4	7	9.0000
)))	chr11:8707204-8707457(+)$1	1	31	34	9.0000
(((	chr19:10930555-10930862(+)$1	1	52	55	9.0000
.((	chr7:98565057-98565367(+)$1	1	12	15	9.0000
(((	chr2:21234633-21234842(-)$1	1	14	17	9.0000
..)	chr5:180663939-180664142(-)$1	1	43	46	9.0000
(((	chr11:2154752-2154956(-)$1	1	17	20	9.0000
..)	chr11:62286276-62286523(-)$1	1	87	90	9.0000

#PSSM
A : 1.00	
G : 1.00	
U : 1.00	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_CDS_m1_run1.nuc.txt

#NT
aaagaugaggacguugaagaggaagaugagga	chr2:29169490-29169768(+)$1	278	14	46	44.0000
gaagagaaggaagaggaggaagaagaagagua	chr1:145456890-145457197(-)$1	307	153	185	53.9000
GAAGAUGAGAAAAAAGAUGAAGAAAAAGAAGA	chr12:76449798-76450042(-)$1	244	128	160	43.7000
GAUGAUgaagaaggagaaggagaagaagauga	chr9:131456110-131456388(+)$1	278	76	108	50.5000
GAUGAAGGUGAAGAGGGAGAUGAAGACGAUGA	chrX:53588702-53588986(-)$1	284	107	139	44.4000
gaagaggaagaggaagaugaagaggaagagga	chr11:129991571-129991806(+)$1	235	63	95	58.4000
gaugaggaugaaggugaagaagaugaagauga	chr9:131456188-131456393(+)$1	205	79	111	53.7000
GAAGGAAUCAUAGAGGAAGAAGAAGAAGAUGA	chr11:73950098-73950405(+)$1	307	122	154	38.6000
gaugaggaagaugaugaugaugaugaagauga	chr1:186295161-186295470(-)$1	309	115	147	53.9000
GUagacgaagaagaggaagaagguggggagga	chr2:232576505-232576751(+)$1	246	130	162	47.1000
GUagacgaagaagaggaagaagguggggagga	chr2:232576551-232576778(+)$1	227	84	116	47.1000
gaagaggagguggaggaagaagaagaagauga	chr1:52305957-52306232(-)$1	275	140	172	56.9000
gaugaugaagaggaggaugaagaugaagagga	chr20:13756432-13756857(-)$1	425	123	155	58.4000
gaagcagaggaugaugaagaggaagaagauga	chr4:142154863-142155163(+)$1	300	142	174	49.7000
gaugaggaggaggaggaggaagaagaagauga	chr4:174253139-174253352(-)$1	213	56	88	58.1000
gaagaagaagaacagaaugaagaggaagaagu	chr9:116170935-116171288(-)$1	353	156	188	45.8000
gagaaggaagaggaugaggaggaagaagagga	chr8:61193498-61193792(-)$1	294	128	160	50.6000
gaagaggaagaagagaaggaagaggaaaagga	chr5:179151579-179151835(+)$1	256	135	167	54.3000
gaagaggaggaggaggaggaagaugaugauga	chr7:148718003-148718339(-)$1	336	132	164	55.5000
GUagacgaagaagaggaagaagguggggagga	chr2:232576578-232576793(+)$1	215	57	89	47.1000
GAAGAUGAGAAAAAAGAUGAAGAAAAAGAAGA	chr12:76449748-76449967(-)$1	219	53	85	43.7000
gacgaggacgaugaggauggugaagaagagga	chr9:100773452-100773713(+)$1	261	117	149	51.0000
CUUGAUGAAGAAGAUGAAGAUGAGGAUGAGGA	chr9:100774607-100774824(+)$1	217	110	142	45.7000
CAAgaggaagaagaggaggaggaugaagagga	chr1:156713354-156713635(-)$1	281	109	141	55.9000
gaagaugaagaagaggaugaugaggacgagga	chr2:232325323-232325598(-)$1	275	113	145	55.7000
gaagagaaaggugagaaagaagaggaagauaa	chr6:44217997-44218207(+)$1	210	75	107	45.3000
gacgaggacgaugaggauggugaagaagagga	chr9:100773513-100773753(+)$1	240	56	88	51.0000
gaggccgaagaagacaaccaagaagaagggga	chr11:35684817-35685212(+)$1	395	259	291	38.5000
AUAUAGGAAGGGGAAGAAGAAGGAGAUGAGGA	chr12:76442926-76443131(-)$1	205	95	127	38.2000
cuagaggaagaggaggagaaagaagaggagga	chr1:36216769-36217091(-)$1	322	187	219	46.9000
gaggaggaagaagaggaagaagaagaugaaga	chr2:99992845-99993131(+)$1	286	17	49	58.6000
GAUGCUGAAGACGAUGGAGAGGAAGAAGAUGA	chr1:150192894-150193164(-)$1	270	136	168	45.5000
gaagaggaagaagaggaagaagaagaagagga	chr17:4575288-4575634(-)$1	346	22	54	65.3000
gaagaugaagaagaggaugaugaggacgagga	chr2:232325278-232325523(-)$1	245	38	70	55.7000
AaagaagaagaaaaagaagaagaagaagaGAG	chr12:95876888-95877159(+)$1	271	133	165	43.4000
gaagaugaugaagaugaagaagauggagaaga	chr8:124382090-124382367(-)$1	277	207	239	52.8000
gaagaggaagaagagaaggaagaggaaaagga	chr5:179151635-179151885(+)$1	250	79	111	54.3000
gaggaggaggaggagggagacguagaaaagga	chr7:156743123-156743519(+)$1	396	85	117	43.5000
GAGGUGGAUGGUGUGGAUGAAGAGGAGGAGGA	chr9:100767327-100767535(+)$1	208	71	103	43.0000
gaagagaaaggugagaaagaagaggaagauaa	chr6:44218024-44218303(+)$1	279	48	80	45.3000
GAAGAUGAUGAAGCCGAGGUAGAAGAAGAUGA	chr6:7310045-7310363(-)$1	318	169	201	48.2000
gaugaugaugaagaggaugaugaugaAGAGUA	chr5:170819841-170820082(+)$1	241	112	144	51.7000
gaugaggaggaggaggaggaagaagaagauga	chr4:174253130-174253339(-)$1	209	43	75	58.1000
GAGGUGGAUGGUGUGGAUGAAGAGGAGGAGGA	chr9:100767312-100767527(+)$1	215	86	118	43.0000
gaggaggaagaagaggaagaagaagaugaaga	chr2:99992741-99993045(+)$1	304	121	153	58.6000
GAUGAAGAUGGUUAUGAAGAAGAAGAAGAUGA	chr17:73664515-73664809(+)$1	294	142	174	47.3000
gaugaggaugaaggugaagaagaugaagauga	chr9:131456193-131456418(+)$1	225	74	106	53.7000
gccgaggauggagaggaggaagaugaagggga	chr12:6878990-6879265(+)$1	275	135	167	46.5000
GAUGAUGAAAAAGAGGCUGAGGAAGGAGAGGA	chr14:21679339-21679565(-)$1	226	115	147	46.1000

#otherMatches

#Struct PSSM
22dddd22a::::::::::FFFFFF{BBMMMM	chr20:3765399-3765702(-)$1	303	117	149	52.6000
::::::::bb[ddddxxxxxxxxxxxxxxxdd	chr2:29169490-29169768(+)$1	278	14	46	44.0000
FFFFFFLLLDDDD{EEEEEKKBB:::::::::	chr1:145456890-145457197(-)$1	307	153	185	53.9000
d]dddd]ccc55555ggggggg22ddddffff	chr12:76449798-76450042(-)$1	244	128	160	43.7000
cc333==============]a]bb::::bb[b	chr9:131456110-131456388(+)$1	278	76	108	50.5000
22bb]ffffff:GGGGGGGYYA}EEEEE}CCC	chrX:53588702-53588986(-)$1	284	107	139	44.4000
777dddd::::EEEEE{CCC{A{CCC:::eee	chr11:129991571-129991806(+)$1	235	63	95	58.4000
::::::::::::::::::::::::::::::::	chr9:131456188-131456393(+)$1	205	79	111	53.7000
ppppppbb]eeeee>>>>>>>>>>>>>>>>>>	chr11:73950098-73950405(+)$1	307	122	154	38.6000
ffff]bb:::bb[bbmmmmbb]bb::DDDDYY	chr1:186295161-186295470(-)$1	309	115	147	53.9000
[eeeee[ccc"""iiiiiiiii''''''''gg	chr2:232576505-232576751(+)$1	246	130	162	47.1000
[eeeee[ccc"""iiiiiiiii''''''''gg	chr2:232576551-232576778(+)$1	227	84	116	47.1000
@@@@@@@@BB}BB}BB}JJJJJJJJJJJJJ}B	chr1:52305957-52306232(-)$1	275	140	172	56.9000
2bb22eeeee666666bb]bb]bb::::::::	chr20:13756432-13756857(-)$1	425	123	155	58.4000
:ggggggg"""ffffff%%%%%%bb[a!!ddd	chr4:142154863-142155163(+)$1	300	142	174	49.7000
rrrrrbb:::::::::::::::::::::::::	chr4:174253139-174253352(-)$1	213	56	88	58.1000
GGGGG{AMMMMEEEEE:::::::::::::ccc	chr9:116170935-116171288(-)$1	353	156	188	45.8000
pppppeeeee22dddd]a333bb]dddd4444	chr8:61193498-61193792(-)$1	294	128	160	50.6000
b22dddd:::::::::::::::::::::::::	chr5:179151579-179151835(+)$1	256	135	167	54.3000
b]ggggggg333ccc22ggggggg:::::::d	chr7:148718003-148718339(-)$1	336	132	164	55.5000
[eeeee[ccc"""iiiiiiiii''''''''gg	chr2:232576578-232576793(+)$1	215	57	89	47.1000
e]bb]ccc]a22ccc]bb::::::::::::::	chr12:76449748-76449967(-)$1	219	53	85	43.7000
^^^^^^^^a22==========22eeeee]ccc	chr9:100773452-100773713(+)$1	261	117	149	51.0000
EE~~~~DDDD}FFFFFFFFFFFFEEEEE::cc	chr9:100774607-100774824(+)$1	217	110	142	45.7000
bvvvvvvvvvvvvvbb]eeeee::::::FFFF	chr1:156713354-156713635(-)$1	281	109	141	55.9000
:::::::::::DDDDYYCCC}CCC::bb[aqq	chr2:232325323-232325598(-)$1	275	113	145	55.7000
::::::::::::::::::::::::::::::::	chr6:44217997-44218207(+)$1	210	75	107	45.3000
^^^^^^^^a22==========22eeeee]ccc	chr9:100773513-100773753(+)$1	240	56	88	51.0000
:::DDDD::::::::::bbqqqqqqqqbb:::	chr11:35684817-35685212(+)$1	395	259	291	38.5000
KKHHHHHHHHccc!!a[bb"""a[ccc[aooo	chr12:76442926-76443131(-)$1	205	95	127	38.2000
bb::::::::::::::::::::::::::::::	chr1:36216769-36217091(-)$1	322	187	219	46.9000
::::::::::::::::::::::::::::::::	chr2:99992845-99993131(+)$1	286	17	49	58.6000
gggggFFFFFF}EEEEE}DDDD::ggggggg#	chr1:150192894-150193164(-)$1	270	136	168	45.5000
ELLLCCC:::::::::::::::::::::::::	chr17:4575288-4575634(-)$1	346	22	54	65.3000
mmmmbb:::::::::::::::::::BB}DDDD	chr2:232325278-232325523(-)$1	245	38	70	55.7000
mmbb::::::::::::::::::::::::::ee	chr12:95876888-95877159(+)$1	271	133	165	43.4000
::GGGGGGG~~~~DDDDYYDDDD}EEEEE}EE	chr8:124382090-124382367(-)$1	277	207	239	52.8000
b22dddd:::::::::::::eeeee!!bb[dd	chr5:179151635-179151885(+)$1	250	79	111	54.3000
QQGGGGGGGKKFFFFFF::::ccc$$$$$a))	chr7:156743123-156743519(+)$1	396	85	117	43.5000
ee[bb[ffffff+++++++++++eeeee$$$$	chr9:100767327-100767535(+)$1	208	71	103	43.0000
::::::::::::::::::::::::::::::::	chr6:44218024-44218303(+)$1	279	48	80	45.3000
beeeee22bb22ccc:::::DDDDKKGGGGGG	chr6:7310045-7310363(-)$1	318	169	201	48.2000
c4444a]eeeee]dddd::::::::::::ddd	chr5:170819841-170820082(+)$1	241	112	144	51.7000
::::::::::::::::::::::::DDDDPPPP	chr4:174253130-174253339(-)$1	209	43	75	58.1000
ee[bb[ffffff+++++++++++eeeee$$$$	chr9:100767312-100767527(+)$1	215	86	118	43.0000
::::::::::::::::::::::::::::::::	chr2:99992741-99993045(+)$1	304	121	153	58.6000
ZZZHHHHHHHH}BBYYFFFFFFGGGGGGG}HH	chr17:73664515-73664809(+)$1	294	142	174	47.3000
ddddggggggg!!eeeee%%%%%%dddd[bb[	chr9:131456193-131456418(+)$1	225	74	106	53.7000
HHHHHCCCEEEEE~~~~BBYYJJJJJJJJJJ:	chr12:6878990-6879265(+)$1	275	135	167	46.5000
mmdddd]bb55555eeeee666666ffffff2	chr14:21679339-21679565(-)$1	226	115	147	46.1000

#DB
..))))..)..........((((((.((....	chr20:3765399-3765702(-)$1	1	117	149	52.6000
........((.((((...............))	chr2:29169490-29169768(+)$1	1	14	46	44.0000
((((((...((((.(((((..((.........	chr1:145456890-145457197(-)$1	1	153	185	53.9000
).)))).))).....)))))))..))))))))	chr12:76449798-76450042(-)$1	1	128	160	43.7000
))...)))))))))))))).).))....((.(	chr9:131456110-131456388(+)$1	1	76	108	50.5000
..)).)))))).)))))))..).))))).)))	chrX:53588702-53588986(-)$1	1	107	139	44.4000
...))))....(((((.(((.(.(((...(((	chr11:129991571-129991806(+)$1	1	63	95	58.4000
................................	chr9:131456188-131456393(+)$1	1	79	111	53.7000
......)).)))))..................	chr11:73950098-73950405(+)$1	1	122	154	38.6000
)))).))...((.((....)).))..))))..	chr1:186295161-186295470(-)$1	1	115	147	53.9000
.(((((.(((...(((((((((........((	chr2:232576505-232576751(+)$1	1	130	162	47.1000
.(((((.(((...(((((((((........((	chr2:232576551-232576778(+)$1	1	84	116	47.1000
........)).)).)).))))))))))))).)	chr1:52305957-52306232(-)$1	1	140	172	56.9000
.))..)))))......)).)).))........	chr20:13756432-13756857(-)$1	1	123	155	58.4000
.(((((((...((((((......((.(..(((	chr4:142154863-142155163(+)$1	1	142	174	49.7000
.....)).........................	chr4:174253139-174253352(-)$1	1	56	88	58.1000
(((((.(....(((((.............(((	chr9:116170935-116171288(-)$1	1	156	188	45.8000
.....)))))..)))).)...)).))))....	chr8:61193498-61193792(-)$1	1	128	160	50.6000
)..)))).........................	chr5:179151579-179151835(+)$1	1	135	167	54.3000
).)))))))...)))..))))))).......(	chr7:148718003-148718339(-)$1	1	132	164	55.5000
.(((((.(((...(((((((((........((	chr2:232576578-232576793(+)$1	1	57	89	47.1000
).)).))).)..))).))..............	chr12:76449748-76449967(-)$1	1	53	85	43.7000
........)..))))))))))..))))).)))	chr9:100773452-100773713(+)$1	1	117	149	51.0000
))....)))).))))))(((((((((((..((	chr9:100774607-100774824(+)$1	1	110	142	45.7000
(.............)).)))))......))))	chr1:156713354-156713635(-)$1	1	109	141	55.9000
...........))))..))).)))..((.(..	chr2:232325323-232325598(-)$1	1	113	145	55.7000
................................	chr6:44217997-44218207(+)$1	1	75	107	45.3000
........)..))))))))))..))))).)))	chr9:100773513-100773753(+)$1	1	56	88	51.0000
...))))..........((........))...	chr11:35684817-35685212(+)$1	1	259	291	38.5000
..(((((((((((..(.((...(.(((.(...	chr12:76442926-76443131(-)$1	1	95	127	38.2000
))..............................	chr1:36216769-36217091(-)$1	1	187	219	46.9000
................................	chr2:99992845-99993131(+)$1	1	17	49	58.6000
))))))))))).))))).))))..(((((((.	chr1:150192894-150193164(-)$1	1	136	168	45.5000
(...(((.........................	chr17:4575288-4575634(-)$1	1	22	54	65.3000
....))...................)).))))	chr2:232325278-232325523(-)$1	1	38	70	55.7000
..))..........................((	chr12:95876888-95877159(+)$1	1	133	165	43.4000
..)))))))....))))..)))).))))).))	chr8:124382090-124382367(-)$1	1	207	239	52.8000
)..)))).............(((((..((.((	chr5:179151635-179151885(+)$1	1	79	111	54.3000
..(((((((..((((((....(((.....(..	chr7:156743123-156743519(+)$1	1	85	117	43.5000
((.((.((((((...........(((((....	chr9:100767327-100767535(+)$1	1	71	103	43.0000
................................	chr6:44218024-44218303(+)$1	1	48	80	45.3000
))))))..))..))).....((((..((((((	chr6:7310045-7310363(-)$1	1	169	201	48.2000
)....).))))).))))............(((	chr5:170819841-170820082(+)$1	1	112	144	51.7000
........................((((....	chr4:174253130-174253339(-)$1	1	43	75	58.1000
((.((.((((((...........(((((....	chr9:100767312-100767527(+)$1	1	86	118	43.0000
................................	chr2:99992741-99993045(+)$1	1	121	153	58.6000
...)))))))).))..))))))))))))).))	chr17:73664515-73664809(+)$1	1	142	174	47.3000
))))(((((((..(((((......((((.((.	chr9:131456193-131456418(+)$1	1	74	106	53.7000
)))))))))))))....))..)))))))))).	chr12:6878990-6879265(+)$1	1	135	167	46.5000
..)))).)).....)))))......)))))).	chr14:21679339-21679565(-)$1	1	115	147	46.1000

#PSSM
g : 0.58	G : 0.30	C : 0.04	A : 0.04	a : 0.02	c : 0.02	
a : 0.60	A : 0.25	U : 0.10	u : 0.02	c : 0.02	
a : 0.40	A : 0.14	u : 0.14	U : 0.12	g : 0.10	c : 0.06	G : 0.04	
g : 0.70	G : 0.25	a : 0.02	U : 0.02	
a : 0.68	A : 0.19	c : 0.04	U : 0.04	G : 0.02	C : 0.02	
g : 0.46	U : 0.14	u : 0.12	G : 0.08	c : 0.08	A : 0.06	a : 0.06	
g : 0.70	G : 0.21	a : 0.06	A : 0.02	
a : 0.76	A : 0.19	G : 0.02	U : 0.02	
a : 0.44	g : 0.16	U : 0.10	u : 0.10	A : 0.08	c : 0.06	G : 0.04	C : 0.02	
g : 0.76	G : 0.16	A : 0.08	
a : 0.68	A : 0.14	G : 0.08	g : 0.06	U : 0.02	u : 0.02	
a : 0.42	g : 0.18	u : 0.14	A : 0.14	U : 0.06	c : 0.02	G : 0.02	C : 0.02	
g : 0.72	G : 0.18	A : 0.04	c : 0.02	a : 0.02	U : 0.02	
a : 0.68	A : 0.18	g : 0.06	U : 0.04	u : 0.02	C : 0.02	
g : 0.54	u : 0.14	G : 0.10	A : 0.06	a : 0.06	U : 0.06	c : 0.02	C : 0.02	
g : 0.64	G : 0.23	a : 0.12	
a : 0.74	A : 0.18	G : 0.04	g : 0.02	C : 0.02	
a : 0.36	g : 0.19	u : 0.18	A : 0.12	U : 0.10	c : 0.02	G : 0.02	
g : 0.72	G : 0.23	c : 0.02	a : 0.02	
a : 0.70	A : 0.21	g : 0.06	U : 0.02	
a : 0.52	A : 0.16	u : 0.12	g : 0.10	U : 0.04	G : 0.04	c : 0.02	
g : 0.76	G : 0.23	
a : 0.68	A : 0.21	g : 0.06	G : 0.02	u : 0.02	
a : 0.34	u : 0.25	A : 0.18	g : 0.16	G : 0.06	
g : 0.76	G : 0.19	A : 0.04	
a : 0.68	A : 0.21	g : 0.08	G : 0.02	
a : 0.52	A : 0.16	u : 0.10	g : 0.08	U : 0.04	c : 0.04	G : 0.04	C : 0.02	
g : 0.68	G : 0.25	a : 0.06	
a : 0.70	A : 0.25	g : 0.04	
g : 0.40	u : 0.21	G : 0.14	a : 0.10	U : 0.10	A : 0.04	
g : 0.66	G : 0.23	a : 0.04	u : 0.02	A : 0.02	U : 0.02	
a : 0.70	A : 0.25	u : 0.02	G : 0.02	

#score	2496.8000000000025
#seq	50
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_CDS_m2_run1.nuc.txt

#NT
GGAGCUG	chr19:2270411-2270656(+)$1	245	103	110	15.7727
GGGGCUG	chr16:29817999-29818247(+)$1	248	155	162	18.2727
GGGGCUG	chr22:50018397-50018654(-)$1	257	36	43	18.2727
ggggcug	chr11:47380064-47380339(-)$1	275	89	96	18.2727
ggcgcug	chr19:10407088-10407332(+)$1	244	96	103	16.0000
GGGGCUG	chr5:154135292-154135583(+)$1	291	90	97	18.2727
GGGCCUG	chr1:22155800-22156052(-)$1	252	104	111	15.0909
GGUGCUG	chr11:5275532-5275800(-)$1	268	164	171	15.3181
GGCGCUG	chr19:59060423-59060667(+)$1	244	94	101	16.0000
GGGCCUG	chrX:152954046-152954287(+)$1	241	96	103	15.0909
GGGGCUG	chr4:78740041-78740317(-)$1	276	45	52	18.2727
GGGGCUG	chr19:18547567-18547863(-)$1	296	237	244	18.2727
GGCGCUG	chr17:73892406-73892773(-)$1	367	135	142	16.0000
GGGCCUG	chr1:22155775-22156000(-)$1	225	52	59	15.0909
GGAGCUG	chr17:76117512-76117838(-)$1	326	45	52	15.7727
GGCGCUG	chr19:59056282-59056528(+)$1	246	12	19	16.0000
GGGGCUG	chrX:153589595-153589864(-)$1	269	54	61	18.2727
GGAGCUG	chr5:176916992-176917261(-)$1	269	189	196	15.7727
GGGGCUG	chr1:22160236-22160479(-)$1	243	207	214	18.2727
GGGGCUG	chr17:80050762-80050972(-)$1	210	39	46	18.2727
GGGGCUG	chr16:28878127-28878395(+)$1	268	56	63	18.2727

#otherMatches

#Struct PSSM
ggggggg	chrX:152954103-152954376(+)$1	273	39	46	15.0909
f!!a[a[	chr19:2270411-2270656(+)$1	245	103	110	15.7727
hhhhhhh	chr16:29817999-29818247(+)$1	248	155	162	18.2727
[dddd[b	chr22:50018397-50018654(-)$1	257	36	43	18.2727
ffff:::	chr11:47380064-47380339(-)$1	275	89	96	18.2727
eee]bb]	chr19:10407088-10407332(+)$1	244	96	103	16.0000
b[ccc[c	chr5:154135292-154135583(+)$1	291	90	97	18.2727
dddd22d	chr1:22155800-22156052(-)$1	252	104	111	15.0909
ccc22dd	chr11:5275532-5275800(-)$1	268	164	171	15.3181
DD}FFFF	chr19:59060423-59060667(+)$1	244	94	101	16.0000
ggggggg	chrX:152954046-152954287(+)$1	241	96	103	15.0909
dddnnnn	chr4:78740041-78740317(-)$1	276	45	52	18.2727
=======	chr19:18547567-18547863(-)$1	296	237	244	18.2727
ggggggb	chr17:73892406-73892773(-)$1	367	135	142	16.0000
dddd22d	chr1:22155775-22156000(-)$1	225	52	59	15.0909
dlllddd	chr17:76117512-76117838(-)$1	326	45	52	15.7727
KKDDDDL	chr19:59056282-59056528(+)$1	246	12	19	16.0000
ffffff]	chrX:153589595-153589864(-)$1	269	54	61	18.2727
dd[ccc[	chr5:176916992-176917261(-)$1	269	189	196	15.7727
EEEEEZZ	chr1:22160236-22160479(-)$1	243	207	214	18.2727
nnndddd	chr17:80050762-80050972(-)$1	210	39	46	18.2727
hhhhhhh	chr16:28878127-28878395(+)$1	268	56	63	18.2727

#DB
)))))))	chrX:152954103-152954376(+)$1	1	39	46	15.0909
(..(.(.	chr19:2270411-2270656(+)$1	1	103	110	15.7727
(((((((	chr16:29817999-29818247(+)$1	1	155	162	18.2727
.((((.(	chr22:50018397-50018654(-)$1	1	36	43	18.2727
))))...	chr11:47380064-47380339(-)$1	1	89	96	18.2727
))).)).	chr19:10407088-10407332(+)$1	1	96	103	16.0000
(.(((.(	chr5:154135292-154135583(+)$1	1	90	97	18.2727
))))..)	chr1:22155800-22156052(-)$1	1	104	111	15.0909
)))..))	chr11:5275532-5275800(-)$1	1	164	171	15.3181
)).))))	chr19:59060423-59060667(+)$1	1	94	101	16.0000
)))))))	chrX:152954046-152954287(+)$1	1	96	103	15.0909
(((....	chr4:78740041-78740317(-)$1	1	45	52	18.2727
(((((((	chr19:18547567-18547863(-)$1	1	237	244	18.2727
(((((((	chr17:73892406-73892773(-)$1	1	135	142	16.0000
))))..)	chr1:22155775-22156000(-)$1	1	52	59	15.0909
(...)))	chr17:76117512-76117838(-)$1	1	45	52	15.7727
..((((.	chr19:59056282-59056528(+)$1	1	12	19	16.0000
)))))).	chrX:153589595-153589864(-)$1	1	54	61	18.2727
((.(((.	chr5:176916992-176917261(-)$1	1	189	196	15.7727
)))))..	chr1:22160236-22160479(-)$1	1	207	214	18.2727
...))))	chr17:80050762-80050972(-)$1	1	39	46	18.2727
(((((((	chr16:28878127-28878395(+)$1	1	56	63	18.2727

#PSSM
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	
G : 0.59	A : 0.13	C : 0.13	g : 0.04	c : 0.04	U : 0.04	
G : 0.72	C : 0.18	g : 0.09	
C : 0.90	c : 0.09	
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	

#score	369.72727272727263
#seq	22
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_CDS_m2_run1.nuc.txt

#NT
CGCAGGG	chr16:1399221-1399544(-)$1	323	33	40	12.8749
CCCAGGG	chr22:20100023-20100318(-)$1	295	270	277	17.1805
GCCAGGG	chr20:43565190-43565466(+)$1	276	18	25	13.4999
CCCAGGG	chr17:79974712-79974936(+)$1	224	212	219	17.1805
CCCAUGG	chr22:29688010-29688258(+)$1	248	117	124	13.0138
CCCAGAG	chr20:39800964-39801197(+)$1	233	91	98	13.3611
CCCAGGU	chr3:184100580-184100825(+)$1	245	69	76	13.2222
CCCAGAG	chr2:27587225-27587490(-)$1	265	130	137	13.3611
CCCAGGU	chr15:65110118-65110392(-)$1	274	108	115	13.2222
cccuggg	chr17:48629103-48629447(+)$1	344	66	73	12.9444
CCCAGGG	chr16:1818604-1818849(+)$1	245	33	40	17.1805
CCCAGGA	chr16:845197-845446(+)$1	249	126	133	13.0833
CCCAGGG	chrX:47073911-47074137(+)$1	226	55	62	17.1805
CCCAGGC	chr21:47556827-47557081(-)$1	254	134	141	13.0138
CCCAGGA	chr19:36290872-36291131(-)$1	259	85	92	13.0833
CCCAAGG	chr5:6599990-6600254(-)$1	264	221	228	12.9444
CCCAAGG	chr3:49158588-49158869(-)$1	281	217	224	12.9444
CCCAGGG	chr9:117050893-117051121(+)$1	228	27	34	17.1805
CCCAGUG	chr1:46083063-46083345(+)$1	282	161	168	13.1527
CCCGGGG	chr16:1818218-1818444(+)$1	226	19	26	12.8055
CACAGGG	chr14:21464842-21465094(+)$1	252	96	103	12.8055
CACAGGG	chr13:33091979-33092234(-)$1	255	225	232	12.8055
CCCAGGG	chr3:47050608-47050924(+)$1	316	296	303	17.1805
CCCAGGG	chr16:1818378-1818600(+)$1	222	94	101	17.1805
CCCCGGG	chr19:50920199-50920449(+)$1	250	125	132	12.7361
CCCAGAG	chr20:60889510-60889714(-)$1	204	40	47	13.3611
CCCAUGG	chr20:2816075-2816329(-)$1	254	37	44	13.0138
CCCAGGG	chr20:61471794-61472021(+)$1	227	198	205	17.1805
UCCAGGG	chr20:61467733-61467974(+)$1	241	91	98	13.2222
CCCUGGG	chr3:49721658-49721878(-)$1	220	145	152	12.9444
CCCGGGG	chr1:1229681-1229941(-)$1	260	21	28	12.8055
CCCAGGU	chr16:239221-239439(-)$1	218	96	103	13.2222
CCCAGAG	chr1:22155970-22156195(-)$1	225	18	25	13.3611
GCCAGGG	chr7:65554500-65554734(+)$1	234	53	60	13.4999
CCCAGGU	chr9:117068699-117068907(+)$1	208	8	15	13.2222
GCCAGGG	chr17:80400001-80400294(+)$1	293	272	279	13.4999
GCCAGGG	chr1:40768702-40768953(-)$1	251	60	67	13.4999
GCCAGGG	chr16:2580908-2581169(+)$1	261	58	65	13.4999
CCCAGCG	chr2:219563887-219564163(+)$1	276	80	87	13.0833
CCCAUGG	chr9:117053060-117053286(+)$1	226	59	66	13.0138
CCCAGCG	chr17:48631511-48631740(+)$1	229	117	124	13.0833
CCCAAGG	chr21:46923848-46924068(+)$1	220	150	157	12.9444
CGCAGGG	chr3:50107806-50108086(+)$1	280	108	115	12.8749
UCCAGGG	chr3:49721895-49722101(-)$1	206	75	82	13.2222
CCCACGG	chr16:89813155-89813399(-)$1	244	114	121	12.8055
CCCAGGU	chr16:84213203-84213474(-)$1	271	119	126	13.2222
CUCAGGG	chr16:3023138-3023415(+)$1	277	59	66	12.8055
CCCAGAG	chr9:117063639-117063842(+)$1	203	20	27	13.3611
CCCUGGG	chr17:26904629-26904895(-)$1	266	54	61	12.9444
GCCAGGG	chr1:113242741-113243016(+)$1	275	231	238	13.4999
CCCAUGG	chr1:46654419-46654666(-)$1	247	158	165	13.0138
CCCAGGG	chr8:145698667-145698920(+)$1	253	187	194	17.1805
UCCAGGG	chr1:113242994-113243252(+)$1	258	38	45	13.2222
CCCAGGG	chr8:22429840-22430058(+)$1	218	154	161	17.1805
CCCAGGG	chr19:2099092-2099421(+)$1	329	99	106	17.1805
ACCAGGG	chr6:33260105-33260366(-)$1	261	146	153	13.1527
CCCUGGG	chr3:49721646-49721858(-)$1	212	125	132	12.9444
CCCAGGG	chr3:49159022-49159287(-)$1	265	142	149	17.1805
CCCAGUG	chr1:249144261-249144718(-)$1	457	193	200	13.1527
ACCAGGG	chr16:67979975-67980193(-)$1	218	124	131	13.1527
CGCAGGG	chr20:3028361-3028671(+)$1	310	139	146	12.8749
CCCAGGA	chr6:31498972-31499180(-)$1	208	95	102	13.0833
CCCAGGG	chr3:184101288-184101531(+)$1	243	167	174	17.1805
CCCAGGC	chr20:60886999-60887205(-)$1	206	63	70	13.0138
CCCAGGG	chr17:37819000-37819312(+)$1	312	51	58	17.1805
CCCAGAG	chr3:184107054-184107269(+)$1	215	104	111	13.3611
CUCAGGG	chr2:74589078-74589325(-)$1	247	141	148	12.8055
CCCAGGG	chr9:117063861-117064078(+)$1	217	95	102	17.1805
CCCAGGG	chr20:44978908-44979165(-)$1	257	116	123	17.1805
CCCAGGG	chr9:117002399-117002602(+)$1	203	165	172	17.1805
GCCAGGG	chr9:116997778-116997988(+)$1	210	24	31	13.4999

#otherMatches

#Struct PSSM
a]fffff	chr1:1231294-1231557(-)$1	263	114	121	13.1527
HFFFFFF	chr16:1399221-1399544(-)$1	323	33	40	12.8749
~~~~HHH	chr22:20100023-20100318(-)$1	295	270	277	17.1805
CC{DDDD	chr20:43565190-43565466(+)$1	276	18	25	13.4999
::::DDD	chr17:79974712-79974936(+)$1	224	212	219	17.1805
:bb[eee	chr22:29688010-29688258(+)$1	248	117	124	13.0138
ppccc]b	chr20:39800964-39801197(+)$1	233	91	98	13.3611
ccc:fff	chr3:184100580-184100825(+)$1	245	69	76	13.2222
FFFLLLC	chr2:27587225-27587490(-)$1	265	130	137	13.3611
:BB{EEE	chr15:65110118-65110392(-)$1	274	108	115	13.2222
EEKKBBh	chr17:48629103-48629447(+)$1	344	66	73	12.9444
EEEEEEE	chr16:1818604-1818849(+)$1	245	33	40	17.1805
::::ccc	chr16:845197-845446(+)$1	249	126	133	13.0833
pppppff	chrX:47073911-47074137(+)$1	226	55	62	17.1805
qqqqddd	chr21:47556827-47557081(-)$1	254	134	141	13.0138
22ddddb	chr19:36290872-36291131(-)$1	259	85	92	13.0833
eee!!am	chr5:6599990-6600254(-)$1	264	221	228	12.9444
nnnnccc	chr3:49158588-49158869(-)$1	281	217	224	12.9444
cc[dddd	chr9:117050893-117051121(+)$1	228	27	34	17.1805
gggg]bb	chr1:46083063-46083345(+)$1	282	161	168	13.1527
llddddC	chr16:1818218-1818444(+)$1	226	19	26	12.8055
eeeee[c	chr14:21464842-21465094(+)$1	252	96	103	12.8055
dnnnnnd	chr13:33091979-33092234(-)$1	255	225	232	12.8055
cc4444d	chr3:47050608-47050924(+)$1	316	296	303	17.1805
55eeeee	chr16:1818378-1818600(+)$1	222	94	101	17.1805
aeeeee"	chr19:50920199-50920449(+)$1	250	125	132	12.7361
d[cccll	chr20:60889510-60889714(-)$1	204	40	47	13.3611
fff[ddd	chr20:2816075-2816329(-)$1	254	37	44	13.0138
iiiiiii	chr20:61471794-61472021(+)$1	227	198	205	17.1805
dddpppp	chr20:61467733-61467974(+)$1	241	91	98	13.2222
ddddfff	chr3:49721658-49721878(-)$1	220	145	152	12.9444
dddd[ee	chr1:1229681-1229941(-)$1	260	21	28	12.8055
qqqqbb4	chr16:239221-239439(-)$1	218	96	103	13.2222
FF:::::	chr1:22155970-22156195(-)$1	225	18	25	13.3611
lffffff	chr7:65554500-65554734(+)$1	234	53	60	13.4999
:::FFFF	chr9:117068699-117068907(+)$1	208	8	15	13.2222
JJJJJJJ	chr17:80400001-80400294(+)$1	293	272	279	13.4999
CChhhhh	chr1:40768702-40768953(-)$1	251	60	67	13.4999
]eeeee3	chr16:2580908-2581169(+)$1	261	58	65	13.4999
333====	chr2:219563887-219564163(+)$1	276	80	87	13.0833
eelllee	chr9:117053060-117053286(+)$1	226	59	66	13.0138
bnnnnnb	chr17:48631511-48631740(+)$1	229	117	124	13.0833
nnnnnff	chr21:46923848-46924068(+)$1	220	150	157	12.9444
DD:::cc	chr3:50107806-50108086(+)$1	280	108	115	12.8749
22eeeee	chr3:49721895-49722101(-)$1	206	75	82	13.2222
D{BB{EE	chr16:89813155-89813399(-)$1	244	114	121	12.8055
mmmmfff	chr16:84213203-84213474(-)$1	271	119	126	13.2222
DMMMMEE	chr16:3023138-3023415(+)$1	277	59	66	12.8055
ccciiii	chr9:117063639-117063842(+)$1	203	20	27	13.3611
f"""ccc	chr17:26904629-26904895(-)$1	266	54	61	12.9444
!bboooo	chr1:113242741-113243016(+)$1	275	231	238	13.4999
""dddd#	chr1:46654419-46654666(-)$1	247	158	165	13.0138
g:::eee	chr8:145698667-145698920(+)$1	253	187	194	17.1805
::bb[cc	chr1:113242994-113243252(+)$1	258	38	45	13.2222
ddbbnnn	chr8:22429840-22430058(+)$1	218	154	161	17.1805
KFFFFFF	chr19:2099092-2099421(+)$1	329	99	106	17.1805
22eeeee	chr6:33260105-33260366(-)$1	261	146	153	13.1527
ddddhhh	chr3:49721646-49721858(-)$1	212	125	132	12.9444
ddccc""	chr3:49159022-49159287(-)$1	265	142	149	17.1805
eeeee[e	chr1:249144261-249144718(-)$1	457	193	200	13.1527
f::::HH	chr16:67979975-67980193(-)$1	218	124	131	13.1527
:bb[ccc	chr20:3028361-3028671(+)$1	310	139	146	12.8749
ddddbb]	chr6:31498972-31499180(-)$1	208	95	102	13.0833
dddd[ff	chr3:184101288-184101531(+)$1	243	167	174	17.1805
fffff]e	chr20:60886999-60887205(-)$1	206	63	70	13.0138
33eeeee	chr17:37819000-37819312(+)$1	312	51	58	17.1805
$$cccrr	chr3:184107054-184107269(+)$1	215	104	111	13.3611
hhhhlll	chr2:74589078-74589325(-)$1	247	141	148	12.8055
eeeee22	chr9:117063861-117064078(+)$1	217	95	102	17.1805
DDYYEEE	chr20:44978908-44979165(-)$1	257	116	123	17.1805
DZZZCCC	chr9:117002399-117002602(+)$1	203	165	172	17.1805
EEEEggg	chr9:116997778-116997988(+)$1	210	24	31	13.4999

#DB
).)))))	chr1:1231294-1231557(-)$1	1	114	121	13.1527
(((((((	chr16:1399221-1399544(-)$1	1	33	40	12.8749
....)))	chr22:20100023-20100318(-)$1	1	270	277	17.1805
((.((((	chr20:43565190-43565466(+)$1	1	18	25	13.4999
....)))	chr17:79974712-79974936(+)$1	1	212	219	17.1805
.((.(((	chr22:29688010-29688258(+)$1	1	117	124	13.0138
..))).)	chr20:39800964-39801197(+)$1	1	91	98	13.3611
))).(((	chr3:184100580-184100825(+)$1	1	69	76	13.2222
(((...(	chr2:27587225-27587490(-)$1	1	130	137	13.3611
.((.(((	chr15:65110118-65110392(-)$1	1	108	115	13.2222
((..(((	chr17:48629103-48629447(+)$1	1	66	73	12.9444
(((((((	chr16:1818604-1818849(+)$1	1	33	40	17.1805
....(((	chr16:845197-845446(+)$1	1	126	133	13.0833
.....))	chrX:47073911-47074137(+)$1	1	55	62	17.1805
....)))	chr21:47556827-47557081(-)$1	1	134	141	13.0138
..)))))	chr19:36290872-36291131(-)$1	1	85	92	13.0833
(((..(.	chr5:6599990-6600254(-)$1	1	221	228	12.9444
....)))	chr3:49158588-49158869(-)$1	1	217	224	12.9444
((.((((	chr9:117050893-117051121(+)$1	1	27	34	17.1805
)))).))	chr1:46083063-46083345(+)$1	1	161	168	13.1527
..))))(	chr16:1818218-1818444(+)$1	1	19	26	12.8055
(((((.(	chr14:21464842-21465094(+)$1	1	96	103	12.8055
(.....)	chr13:33091979-33092234(-)$1	1	225	232	12.8055
))....)	chr3:47050608-47050924(+)$1	1	296	303	17.1805
..)))))	chr16:1818378-1818600(+)$1	1	94	101	17.1805
((((((.	chr19:50920199-50920449(+)$1	1	125	132	12.7361
(.(((..	chr20:60889510-60889714(-)$1	1	40	47	13.3611
(((.(((	chr20:2816075-2816329(-)$1	1	37	44	13.0138
)))))))	chr20:61471794-61472021(+)$1	1	198	205	17.1805
(((....	chr20:61467733-61467974(+)$1	1	91	98	13.2222
)))))))	chr3:49721658-49721878(-)$1	1	145	152	12.9444
((((.((	chr1:1229681-1229941(-)$1	1	21	28	12.8055
....)).	chr16:239221-239439(-)$1	1	96	103	13.2222
((.....	chr1:22155970-22156195(-)$1	1	18	25	13.3611
.))))))	chr7:65554500-65554734(+)$1	1	53	60	13.4999
...((((	chr9:117068699-117068907(+)$1	1	8	15	13.2222
)))))))	chr17:80400001-80400294(+)$1	1	272	279	13.4999
(((((((	chr1:40768702-40768953(-)$1	1	60	67	13.4999
.))))).	chr16:2580908-2581169(+)$1	1	58	65	13.4999
...))))	chr2:219563887-219564163(+)$1	1	80	87	13.0833
((...))	chr9:117053060-117053286(+)$1	1	59	66	13.0138
(.....)	chr17:48631511-48631740(+)$1	1	117	124	13.0833
.....))	chr21:46923848-46924068(+)$1	1	150	157	12.9444
((...((	chr3:50107806-50108086(+)$1	1	108	115	12.8749
..)))))	chr3:49721895-49722101(-)$1	1	75	82	13.2222
(.((.((	chr16:89813155-89813399(-)$1	1	114	121	12.8055
....)))	chr16:84213203-84213474(-)$1	1	119	126	13.2222
(....((	chr16:3023138-3023415(+)$1	1	59	66	12.8055
)))((((	chr9:117063639-117063842(+)$1	1	20	27	13.3611
(...(((	chr17:26904629-26904895(-)$1	1	54	61	12.9444
.((....	chr1:113242741-113243016(+)$1	1	231	238	13.4999
..((((.	chr1:46654419-46654666(-)$1	1	158	165	13.0138
)...(((	chr8:145698667-145698920(+)$1	1	187	194	17.1805
..((.((	chr1:113242994-113243252(+)$1	1	38	45	13.2222
((((...	chr8:22429840-22430058(+)$1	1	154	161	17.1805
.((((((	chr19:2099092-2099421(+)$1	1	99	106	17.1805
..)))))	chr6:33260105-33260366(-)$1	1	146	153	13.1527
)))))))	chr3:49721646-49721858(-)$1	1	125	132	12.9444
(((((..	chr3:49159022-49159287(-)$1	1	142	149	17.1805
(((((.(	chr1:249144261-249144718(-)$1	1	193	200	13.1527
)....))	chr16:67979975-67980193(-)$1	1	124	131	13.1527
.((.(((	chr20:3028361-3028671(+)$1	1	139	146	12.8749
)))))).	chr6:31498972-31499180(-)$1	1	95	102	13.0833
((((.((	chr3:184101288-184101531(+)$1	1	167	174	17.1805
))))).)	chr20:60886999-60887205(-)$1	1	63	70	13.0138
..)))))	chr17:37819000-37819312(+)$1	1	51	58	17.1805
..(((..	chr3:184107054-184107269(+)$1	1	104	111	13.3611
((((...	chr2:74589078-74589325(-)$1	1	141	148	12.8055
)))))..	chr9:117063861-117064078(+)$1	1	95	102	17.1805
))..)))	chr20:44978908-44979165(-)$1	1	116	123	17.1805
)...)))	chr9:117002399-117002602(+)$1	1	165	172	17.1805
(((((((	chr9:116997778-116997988(+)$1	1	24	31	13.4999

#PSSM
C : 0.81	G : 0.09	U : 0.04	A : 0.02	c : 0.01	
C : 0.88	G : 0.04	A : 0.02	U : 0.02	c : 0.01	
C : 0.98	c : 0.01	
A : 0.90	U : 0.04	G : 0.02	u : 0.01	C : 0.01	
G : 0.87	U : 0.05	A : 0.04	g : 0.01	C : 0.01	
G : 0.83	A : 0.08	U : 0.04	C : 0.02	g : 0.01	
G : 0.84	U : 0.06	A : 0.04	C : 0.02	g : 0.01	

#score	1013.3888888888874
#seq	72
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_UTR_m1_run2.nuc.txt

#NT
CCCCUCCCC	chr1:100315678-100316044(+)$1	366	218	227	23.2318
CCCCUCCCC	chr12:132569242-132569524(+)$1	282	7	16	23.2318
CCCCUCUCC	chr17:45608387-45608709(+)$1	322	91	100	18.5942
cccaucccc	chr13:113537250-113537463(+)$1	213	75	84	19.1739
CCCCUCCCU	chr14:94843680-94843956(-)$1	276	122	131	19.3913
cuccucccc	chr22:30805156-30805419(-)$1	263	101	110	18.5217
UCCCUCCCC	chr17:4575925-4576264(-)$1	339	134	143	18.9565
cccgucccc	chr17:80708678-80708955(+)$1	277	13	22	18.9565
CCCCUCCCC	chr16:28885175-28885449(+)$1	274	143	152	23.2318
CCCCUUCCC	chr7:150929597-150929862(+)$1	265	54	63	19.6086
CCCCUCCCA	chr22:38062018-38062287(+)$1	269	20	29	19.2463
CCACUCCCC	chr7:1028439-1028670(+)$1	231	48	57	18.5217
CCCUUCCCC	chr15:74923825-74924155(-)$1	330	163	172	19.1739
CCCCUCACC	chrX:53965392-53965645(-)$1	253	71	80	18.5217
CCCCUCCCC	chr19:50818609-50818882(-)$1	273	167	176	23.2318
CCCCUCCCC	chr17:4800843-4801084(+)$1	241	10	19	23.2318
CCCCUGCCC	chr7:1028623-1028846(+)$1	223	7	16	19.3188
CCCCUCCCC	chr17:7308342-7308593(+)$1	251	115	124	23.2318
UCCCUCCCC	chr8:144357253-144357508(+)$1	255	5	14	18.9565
CCCCUCCCU	chr2:204305431-204305734(-)$1	303	135	144	19.3913
CCCCUCCCA	chr7:143087765-143088034(+)$1	269	109	118	19.2463
CCCCUUCCC	chr6:35441448-35441737(-)$1	289	101	110	19.6086
CCCUUCCCC	chr9:34634924-34635221(-)$1	297	87	96	19.1739
CCCUUCCCC	chr17:40994951-40995218(+)$1	267	146	155	19.1739
CCCCUCCCA	chr16:67977952-67978221(-)$1	269	146	155	19.2463
CCCCUCUCC	chr22:38687031-38687302(-)$1	271	256	265	18.5942
CCCCUCCCC	chr16:24942194-24942473(-)$1	279	111	120	23.2318
CCCCUCCUC	chr19:6414020-6414315(-)$1	295	105	114	18.8115
UCCCUCCCC	chr6:36654240-36654562(+)$1	322	148	157	18.9565
CCCCUCCCC	chr19:2248443-2248699(+)$1	256	82	91	23.2318
CCCUUCCCC	chr8:22053884-22054188(+)$1	304	252	261	19.1739
CCCCUCCCC	chr19:3053150-3053399(-)$1	249	207	216	23.2318
UCCCUCCCC	chr17:45885037-45885278(-)$1	241	67	76	18.9565
CCCCUCCCC	chr1:53018655-53019028(-)$1	373	9	18	23.2318
CCCCUCCCC	chr9:35697455-35697805(-)$1	350	181	190	23.2318
CCCCUCCUC	chr16:28914932-28915246(+)$1	314	99	108	18.8115
ccccucccc	chr15:67835410-67835661(+)$1	251	110	119	23.2318
ccccuuccc	chr19:54972975-54973245(+)$1	270	112	121	19.6086
CCCCGCCCC	chr10:102732332-102732674(+)$1	342	269	278	18.7391
ccccuccuc	chr19:35532885-35533119(+)$1	234	121	130	18.8115
CCCCUUCCC	chr3:47451501-47451788(+)$1	287	108	117	19.6086
CCCCGCCCC	chr19:811238-811518(+)$1	280	113	122	18.7391
CCCCUCCCU	chr19:1394434-1394807(+)$1	373	173	182	19.3913
CCCCACCCC	chr8:22432327-22432568(+)$1	241	135	144	18.8115
CCCCACCCC	chr6:41566850-41567168(+)$1	318	3	12	18.8115
CCACUCCCC	chr9:96021251-96021501(+)$1	250	114	123	18.5217
CCCCUUCCC	chr16:69599836-69600149(+)$1	313	114	123	19.6086
ccccugccc	chr16:87733945-87734258(-)$1	313	173	182	19.3188
CCCAUCCCC	chr3:47451882-47452173(+)$1	291	73	82	19.1739
CCCCUUCCC	chr17:65105487-65105751(-)$1	264	114	123	19.6086
CCCCUUCCC	chr11:65622352-65622615(-)$1	263	133	142	19.6086
CCCCUCCCC	chr17:4800665-4800959(+)$1	294	188	197	23.2318
CCCCUCCCU	chr1:45274162-45274435(+)$1	273	118	127	19.3913
CCCCUCCCA	chr22:38014269-38014562(+)$1	293	158	167	19.2463
CCCAUCCCC	chr19:47220021-47220287(-)$1	266	123	132	19.1739
CCCCUGCCC	chr19:49132223-49132527(+)$1	304	7	16	19.3188
CCCCUCCCC	chr6:41568128-41568399(+)$1	271	162	171	23.2318
ccccuccuc	chr19:35532755-35533032(+)$1	277	251	260	18.8115
ccccucccu	chr16:69733960-69734232(+)$1	272	46	55	19.3913
ucccucccc	chr17:7311423-7311696(+)$1	273	8	17	18.9565
cccaucccc	chr19:45322973-45323223(+)$1	250	50	59	19.1739
CCCCUCCCU	chr14:24732308-24732630(-)$1	322	202	211	19.3913
ccccuaccc	chr19:45323655-45323886(+)$1	231	149	158	19.2463
CUCCUCCCC	chr14:24564366-24564639(+)$1	273	233	242	18.5217
CCCCACCCC	chr14:21905055-21905358(-)$1	303	127	136	18.8115
CCCCUCCCC	chr19:54611178-54611462(+)$1	284	67	76	23.2318
CCCCUACCC	chr3:47452098-47452380(+)$1	282	177	186	19.2463
CCCCUCCCC	chr11:824959-825213(+)$1	254	57	66	23.2318

#otherMatches

#Struct PSSM
:::::::::	chr11:10828781-10829028(-)$1	247	118	127	23.2318
""bb(((((	chr1:100315678-100316044(+)$1	366	218	227	23.2318
DD:::::::	chr12:132569242-132569524(+)$1	282	7	16	23.2318
:::::::::	chr17:45608387-45608709(+)$1	322	91	100	18.5942
:::::::::	chr13:113537250-113537463(+)$1	213	75	84	19.1739
::CCCEEEE	chr14:94843680-94843956(-)$1	276	122	131	19.3913
uuuuuffff	chr22:30805156-30805419(-)$1	263	101	110	18.5217
hhhccc"""	chr17:4575925-4576264(-)$1	339	134	143	18.9565
:::::::::	chr17:80708678-80708955(+)$1	277	13	22	18.9565
=====bbmm	chr16:28885175-28885449(+)$1	274	143	152	23.2318
vvvvvvddd	chr7:150929597-150929862(+)$1	265	54	63	19.6086
%%%%%ffff	chr22:38062018-38062287(+)$1	269	20	29	19.2463
2dddd::::	chr7:1028439-1028670(+)$1	231	48	57	18.5217
////////C	chr15:74923825-74924155(-)$1	330	163	172	19.1739
^^^^^^^^^	chrX:53965392-53965645(-)$1	253	71	80	18.5217
DDD{EEEEE	chr19:50818609-50818882(-)$1	273	167	176	23.2318
ddd::::::	chr17:4800843-4801084(+)$1	241	10	19	23.2318
BBEEEEEBB	chr7:1028623-1028846(+)$1	223	7	16	19.3188
::ddddlll	chr17:7308342-7308593(+)$1	251	115	124	23.2318
:::::::::	chr8:144357253-144357508(+)$1	255	5	14	18.9565
:::::::::	chr2:204305431-204305734(-)$1	303	135	144	19.3913
^^^^^^^^^	chr7:143087765-143088034(+)$1	269	109	118	19.2463
sssdddd55	chr6:35441448-35441737(-)$1	289	101	110	19.6086
bb=======	chr9:34634924-34635221(-)$1	297	87	96	19.1739
:::::::::	chr17:40994951-40995218(+)$1	267	146	155	19.1739
22bbccc""	chr16:67977952-67978221(-)$1	269	146	155	19.2463
::bbppppp	chr22:38687031-38687302(-)$1	271	256	265	18.5942
:::::::::	chr16:24942194-24942473(-)$1	279	111	120	23.2318
EEKKBBGGG	chr19:6414020-6414315(-)$1	295	105	114	18.8115
ggggg[eee	chr6:36654240-36654562(+)$1	322	148	157	18.9565
^^^^^^^^^	chr19:2248443-2248699(+)$1	256	82	91	23.2318
gggggbbmm	chr8:22053884-22054188(+)$1	304	252	261	19.1739
:eeeee!!c	chr19:3053150-3053399(-)$1	249	207	216	23.2318
22eeeee::	chr17:45885037-45885278(-)$1	241	67	76	18.9565
::::::fff	chr1:53018655-53019028(-)$1	373	9	18	23.2318
:::::::::	chr9:35697455-35697805(-)$1	350	181	190	23.2318
:::::::::	chr16:28914932-28915246(+)$1	314	99	108	18.8115
eee::::::	chr15:67835410-67835661(+)$1	251	110	119	23.2318
cc^^^^^^^	chr19:54972975-54973245(+)$1	270	112	121	19.6086
uuuccc333	chr10:102732332-102732674(+)$1	342	269	278	18.7391
dd####fff	chr19:35532885-35533119(+)$1	234	121	130	18.8115
:::::::::	chr3:47451501-47451788(+)$1	287	108	117	19.6086
d:eeeee##	chr19:811238-811518(+)$1	280	113	122	18.7391
b>>>>>>>>	chr19:1394434-1394807(+)$1	373	173	182	19.3913
d^^^^^^^^	chr8:22432327-22432568(+)$1	241	135	144	18.8115
ee%%%%%%f	chr6:41566850-41567168(+)$1	318	3	12	18.8115
:::::::::	chr9:96021251-96021501(+)$1	250	114	123	18.5217
e::EEEEED	chr16:69599836-69600149(+)$1	313	114	123	19.6086
ceeeee"""	chr16:87733945-87734258(-)$1	313	173	182	19.3188
''''''''c	chr3:47451882-47452173(+)$1	291	73	82	19.1739
:::::::::	chr17:65105487-65105751(-)$1	264	114	123	19.6086
^^^^^^^^^	chr11:65622352-65622615(-)$1	263	133	142	19.6086
dddccc:::	chr17:4800665-4800959(+)$1	294	188	197	23.2318
e7777777d	chr1:45274162-45274435(+)$1	273	118	127	19.3913
22ffffff]	chr22:38014269-38014562(+)$1	293	158	167	19.2463
[cccnnnnn	chr19:47220021-47220287(-)$1	266	123	132	19.1739
:::::::::	chr19:49132223-49132527(+)$1	304	7	16	19.3188
::ggggggg	chr6:41568128-41568399(+)$1	271	162	171	23.2318
::::::fff	chr19:35532755-35533032(+)$1	277	251	260	18.8115
:::annnnn	chr16:69733960-69734232(+)$1	272	46	55	19.3913
HHMMMMBB:	chr17:7311423-7311696(+)$1	273	8	17	18.9565
^^^^^^^^^	chr19:45322973-45323223(+)$1	250	50	59	19.1739
c::::::::	chr14:24732308-24732630(-)$1	322	202	211	19.3913
:::::::::	chr19:45323655-45323886(+)$1	231	149	158	19.2463
ccdddd:::	chr14:24564366-24564639(+)$1	273	233	242	18.5217
:::::::::	chr14:21905055-21905358(-)$1	303	127	136	18.8115
EEE::::::	chr19:54611178-54611462(+)$1	284	67	76	23.2318
^^^^^^^^^	chr3:47452098-47452380(+)$1	282	177	186	19.2463
sshhhhhhh	chr11:824959-825213(+)$1	254	57	66	23.2318

#DB
.........	chr11:10828781-10829028(-)$1	1	118	127	23.2318
..((.....	chr1:100315678-100316044(+)$1	1	218	227	23.2318
((.......	chr12:132569242-132569524(+)$1	1	7	16	23.2318
.........	chr17:45608387-45608709(+)$1	1	91	100	18.5942
.........	chr13:113537250-113537463(+)$1	1	75	84	19.1739
..(((((((	chr14:94843680-94843956(-)$1	1	122	131	19.3913
.....))))	chr22:30805156-30805419(-)$1	1	101	110	18.5217
((((((...	chr17:4575925-4576264(-)$1	1	134	143	18.9565
.........	chr17:80708678-80708955(+)$1	1	13	22	18.9565
(((((((..	chr16:28885175-28885449(+)$1	1	143	152	23.2318
......)))	chr7:150929597-150929862(+)$1	1	54	63	19.6086
.....((((	chr22:38062018-38062287(+)$1	1	20	29	19.2463
.))))....	chr7:1028439-1028670(+)$1	1	48	57	18.5217
........)	chr15:74923825-74924155(-)$1	1	163	172	19.1739
.........	chrX:53965392-53965645(-)$1	1	71	80	18.5217
(((.(((((	chr19:50818609-50818882(-)$1	1	167	176	23.2318
)))......	chr17:4800843-4801084(+)$1	1	10	19	23.2318
(((((((((	chr7:1028623-1028846(+)$1	1	7	16	19.3188
..((((...	chr17:7308342-7308593(+)$1	1	115	124	23.2318
.........	chr8:144357253-144357508(+)$1	1	5	14	18.9565
.........	chr2:204305431-204305734(-)$1	1	135	144	19.3913
.........	chr7:143087765-143088034(+)$1	1	109	118	19.2463
...))))..	chr6:35441448-35441737(-)$1	1	101	110	19.6086
)))))))))	chr9:34634924-34635221(-)$1	1	87	96	19.1739
.........	chr17:40994951-40995218(+)$1	1	146	155	19.1739
..))(((..	chr16:67977952-67978221(-)$1	1	146	155	19.2463
..((.....	chr22:38687031-38687302(-)$1	1	256	265	18.5942
.........	chr16:24942194-24942473(-)$1	1	111	120	23.2318
((..(((((	chr19:6414020-6414315(-)$1	1	105	114	18.8115
(((((.(((	chr6:36654240-36654562(+)$1	1	148	157	18.9565
.........	chr19:2248443-2248699(+)$1	1	82	91	23.2318
(((((((..	chr8:22053884-22054188(+)$1	1	252	261	19.1739
.(((((..(	chr19:3053150-3053399(-)$1	1	207	216	23.2318
..)))))..	chr17:45885037-45885278(-)$1	1	67	76	18.9565
......(((	chr1:53018655-53019028(-)$1	1	9	18	23.2318
.........	chr9:35697455-35697805(-)$1	1	181	190	23.2318
.........	chr16:28914932-28915246(+)$1	1	99	108	18.8115
)))......	chr15:67835410-67835661(+)$1	1	110	119	23.2318
((.......	chr19:54972975-54973245(+)$1	1	112	121	19.6086
...)))...	chr10:102732332-102732674(+)$1	1	269	278	18.7391
((....(((	chr19:35532885-35533119(+)$1	1	121	130	18.8115
.........	chr3:47451501-47451788(+)$1	1	108	117	19.6086
).(((((..	chr19:811238-811518(+)$1	1	113	122	18.7391
)........	chr19:1394434-1394807(+)$1	1	173	182	19.3913
(........	chr8:22432327-22432568(+)$1	1	135	144	18.8115
((......(	chr6:41566850-41567168(+)$1	1	3	12	18.8115
.........	chr9:96021251-96021501(+)$1	1	114	123	18.5217
)..((((((	chr16:69599836-69600149(+)$1	1	114	123	19.6086
((((((...	chr16:87733945-87734258(-)$1	1	173	182	19.3188
........(	chr3:47451882-47452173(+)$1	1	73	82	19.1739
.........	chr17:65105487-65105751(-)$1	1	114	123	19.6086
.........	chr11:65622352-65622615(-)$1	1	133	142	19.6086
))))))...	chr17:4800665-4800959(+)$1	1	188	197	23.2318
).......)	chr1:45274162-45274435(+)$1	1	118	127	19.3913
..)))))).	chr22:38014269-38014562(+)$1	1	158	167	19.2463
.(((.....	chr19:47220021-47220287(-)$1	1	123	132	19.1739
.........	chr19:49132223-49132527(+)$1	1	7	16	19.3188
..(((((((	chr6:41568128-41568399(+)$1	1	162	171	23.2318
......(((	chr19:35532755-35533032(+)$1	1	251	260	18.8115
...(.....	chr16:69733960-69734232(+)$1	1	46	55	19.3913
((....((.	chr17:7311423-7311696(+)$1	1	8	17	18.9565
.........	chr19:45322973-45323223(+)$1	1	50	59	19.1739
)........	chr14:24732308-24732630(-)$1	1	202	211	19.3913
.........	chr19:45323655-45323886(+)$1	1	149	158	19.2463
))))))...	chr14:24564366-24564639(+)$1	1	233	242	18.5217
.........	chr14:21905055-21905358(-)$1	1	127	136	18.8115
(((......	chr19:54611178-54611462(+)$1	1	67	76	23.2318
.........	chr3:47452098-47452380(+)$1	1	177	186	19.2463
..)))))))	chr11:824959-825213(+)$1	1	57	66	23.2318

#PSSM
C : 0.76	c : 0.15	U : 0.05	u : 0.01	
C : 0.81	c : 0.15	u : 0.01	U : 0.01	
C : 0.79	c : 0.17	A : 0.02	
C : 0.73	c : 0.13	U : 0.05	a : 0.02	A : 0.02	g : 0.01	
U : 0.75	u : 0.17	A : 0.04	G : 0.02	
C : 0.69	c : 0.13	U : 0.08	G : 0.02	u : 0.01	g : 0.01	a : 0.01	A : 0.01	
C : 0.78	c : 0.17	U : 0.02	A : 0.01	
C : 0.79	c : 0.14	U : 0.02	u : 0.02	
C : 0.69	c : 0.15	U : 0.07	A : 0.05	u : 0.01	

#score	1388.072463768115
#seq	69
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_UTR_m2_run2.nuc.txt

#NT
GGAGG	chr17:79637243-79637549(+)$1	306	246	251	15.0000
GGAGG	chr11:118916046-118916421(-)$1	375	193	198	15.0000
GGAGG	chr17:18110045-18110348(+)$1	303	44	49	15.0000
GGAGG	chr5:177631511-177631822(+)$1	311	89	94	15.0000
ggagg	chr17:42276829-42277189(-)$1	360	47	52	15.0000
GGAGG	chr11:67375968-67376248(+)$1	280	163	168	15.0000
GGAGG	chr12:124809567-124809809(-)$1	242	107	112	15.0000
GGAGG	chr14:24679759-24680075(-)$1	316	21	26	15.0000
GGAGG	chr15:60656522-60656827(-)$1	305	220	225	15.0000
GGAGG	chr1:46080584-46080879(+)$1	295	119	124	15.0000
ggagg	chr9:132590250-132590558(-)$1	308	228	233	15.0000
GGAGG	chr19:46029387-46029635(+)$1	248	242	247	15.0000
GGAGG	chr17:7214580-7214858(+)$1	278	135	140	15.0000
ggagg	chr9:139734708-139734982(+)$1	274	118	123	15.0000
GGAGG	chr22:19950078-19950414(+)$1	336	198	203	15.0000
GGAGG	chr2:232577440-232577649(+)$1	209	41	46	15.0000
GGAGG	chrX:118763157-118763500(-)$1	343	85	90	15.0000
GGAGG	chr6:37142939-37143196(+)$1	257	60	65	15.0000
GGAGG	chr6:76311801-76312074(+)$1	273	35	40	15.0000
GGAGG	chr17:43170952-43171271(+)$1	319	9	14	15.0000
GGAGG	chr17:42284405-42284658(-)$1	253	210	215	15.0000
GGAGG	chr12:76449822-76450035(-)$1	213	93	98	15.0000
ggagg	chr11:129992208-129992506(+)$1	298	69	74	15.0000
GGAGG	chr19:49611111-49611406(+)$1	295	62	67	15.0000
GGAGG	chr17:27413852-27414193(-)$1	341	179	184	15.0000
GGAGG	chr15:72499366-72499604(-)$1	238	1	6	15.0000
GGAGG	chr12:122269497-122269770(+)$1	273	84	89	15.0000
GGAGG	chr19:41784895-41785154(+)$1	259	190	195	15.0000
GGAGG	chr11:75114989-75115252(+)$1	263	27	32	15.0000
GGAGG	chr17:75484736-75485046(+)$1	310	25	30	15.0000
GGAGG	chr19:6424637-6424895(-)$1	258	23	28	15.0000
GGAGG	chr22:21213348-21213581(+)$1	233	94	99	15.0000
GGAGG	chr4:1729709-1729956(+)$1	247	118	123	15.0000
ggagg	chr6:163835693-163836053(+)$1	360	15	20	15.0000
ggagg	chr17:4575343-4575574(-)$1	231	6	11	15.0000
GGAGG	chrX:154005149-154005386(+)$1	237	11	16	15.0000
GGAGG	chr11:110128398-110128653(-)$1	255	15	20	15.0000
GGAGG	chr20:16360224-16360505(-)$1	281	204	209	15.0000
GGAGG	chr7:156931689-156931975(+)$1	286	113	118	15.0000
ggagg	chr4:174253128-174253345(-)$1	217	54	59	15.0000
GGAGG	chr3:184052716-184052988(+)$1	272	246	251	15.0000
GGAGG	chr15:72499067-72499322(-)$1	255	229	234	15.0000
GGAGG	chr12:53691540-53691808(+)$1	268	15	20	15.0000
GGAGG	chr5:149829165-149829402(-)$1	237	140	145	15.0000
ggagg	chr16:88851443-88851673(-)$1	230	3	8	15.0000
GGAGG	chr2:20449823-20450062(-)$1	239	189	194	15.0000
GGAGG	chr17:7145466-7145736(-)$1	270	82	87	15.0000
ggagg	chr4:1713888-1714145(-)$1	257	42	47	15.0000

#otherMatches

#Struct PSSM
hhhhh	chr22:21213381-21213633(+)$1	252	61	66	15.0000
EEEZZ	chr17:79637243-79637549(+)$1	306	246	251	15.0000
=====	chr11:118916046-118916421(-)$1	375	193	198	15.0000
ggggl	chr17:18110045-18110348(+)$1	303	44	49	15.0000
dddd!	chr5:177631511-177631822(+)$1	311	89	94	15.0000
BB{EE	chr17:42276829-42277189(-)$1	360	47	52	15.0000
fffff	chr11:67375968-67376248(+)$1	280	163	168	15.0000
dddCC	chr12:124809567-124809809(-)$1	242	107	112	15.0000
a]ddd	chr14:24679759-24680075(-)$1	316	21	26	15.0000
gnnnn	chr15:60656522-60656827(-)$1	305	220	225	15.0000
G::bb	chr1:46080584-46080879(+)$1	295	119	124	15.0000
hmmmm	chr9:132590250-132590558(-)$1	308	228	233	15.0000
GGGG:	chr19:46029387-46029635(+)$1	248	242	247	15.0000
cc]dd	chr17:7214580-7214858(+)$1	278	135	140	15.0000
:FFFF	chr9:139734708-139734982(+)$1	274	118	123	15.0000
c!!dd	chr22:19950078-19950414(+)$1	336	198	203	15.0000
FFFFF	chr2:232577440-232577649(+)$1	209	41	46	15.0000
dd[dd	chrX:118763157-118763500(-)$1	343	85	90	15.0000
dgggg	chr6:37142939-37143196(+)$1	257	60	65	15.0000
ggggg	chr6:76311801-76312074(+)$1	273	35	40	15.0000
KCCCD	chr17:43170952-43171271(+)$1	319	9	14	15.0000
HHHHH	chr17:42284405-42284658(-)$1	253	210	215	15.0000
ppppp	chr12:76449822-76450035(-)$1	213	93	98	15.0000
eeeee	chr11:129992208-129992506(+)$1	298	69	74	15.0000
FFFFF	chr19:49611111-49611406(+)$1	295	62	67	15.0000
dddd:	chr17:27413852-27414193(-)$1	341	179	184	15.0000
cclll	chr15:72499366-72499604(-)$1	238	1	6	15.0000
HHHHH	chr12:122269497-122269770(+)$1	273	84	89	15.0000
cccgg	chr19:41784895-41785154(+)$1	259	190	195	15.0000
ddddc	chr11:75114989-75115252(+)$1	263	27	32	15.0000
fffff	chr17:75484736-75485046(+)$1	310	25	30	15.0000
I::ee	chr19:6424637-6424895(-)$1	258	23	28	15.0000
hhhhh	chr22:21213348-21213581(+)$1	233	94	99	15.0000
a[amm	chr4:1729709-1729956(+)$1	247	118	123	15.0000
MMMCC	chr6:163835693-163836053(+)$1	360	15	20	15.0000
:::::	chr17:4575343-4575574(-)$1	231	6	11	15.0000
!!bbo	chrX:154005149-154005386(+)$1	237	11	16	15.0000
GGG:I	chr11:110128398-110128653(-)$1	255	15	20	15.0000
ee22b	chr20:16360224-16360505(-)$1	281	204	209	15.0000
ggggg	chr7:156931689-156931975(+)$1	286	113	118	15.0000
:::::	chr4:174253128-174253345(-)$1	217	54	59	15.0000
=====	chr3:184052716-184052988(+)$1	272	246	251	15.0000
333ff	chr15:72499067-72499322(-)$1	255	229	234	15.0000
DDDDd	chr12:53691540-53691808(+)$1	268	15	20	15.0000
fff[d	chr5:149829165-149829402(-)$1	237	140	145	15.0000
EE::=	chr16:88851443-88851673(-)$1	230	3	8	15.0000
Feeee	chr2:20449823-20450062(-)$1	239	189	194	15.0000
E::ee	chr17:7145466-7145736(-)$1	270	82	87	15.0000
D{FFF	chr4:1713888-1714145(-)$1	257	42	47	15.0000

#DB
(((((	chr22:21213381-21213633(+)$1	1	61	66	15.0000
)))..	chr17:79637243-79637549(+)$1	1	246	251	15.0000
)))))	chr11:118916046-118916421(-)$1	1	193	198	15.0000
((((.	chr17:18110045-18110348(+)$1	1	44	49	15.0000
((((.	chr5:177631511-177631822(+)$1	1	89	94	15.0000
((.((	chr17:42276829-42277189(-)$1	1	47	52	15.0000
(((((	chr11:67375968-67376248(+)$1	1	163	168	15.0000
)))))	chr12:124809567-124809809(-)$1	1	107	112	15.0000
).)))	chr14:24679759-24680075(-)$1	1	21	26	15.0000
(....	chr15:60656522-60656827(-)$1	1	220	225	15.0000
(..((	chr1:46080584-46080879(+)$1	1	119	124	15.0000
(....	chr9:132590250-132590558(-)$1	1	228	233	15.0000
)))).	chr19:46029387-46029635(+)$1	1	242	247	15.0000
)).))	chr17:7214580-7214858(+)$1	1	135	140	15.0000
.))))	chr9:139734708-139734982(+)$1	1	118	123	15.0000
(..((	chr22:19950078-19950414(+)$1	1	198	203	15.0000
(((((	chr2:232577440-232577649(+)$1	1	41	46	15.0000
((.((	chrX:118763157-118763500(-)$1	1	85	90	15.0000
)))))	chr6:37142939-37143196(+)$1	1	60	65	15.0000
(((((	chr6:76311801-76312074(+)$1	1	35	40	15.0000
.((((	chr17:43170952-43171271(+)$1	1	9	14	15.0000
)))))	chr17:42284405-42284658(-)$1	1	210	215	15.0000
.....	chr12:76449822-76450035(-)$1	1	93	98	15.0000
(((((	chr11:129992208-129992506(+)$1	1	69	74	15.0000
(((((	chr19:49611111-49611406(+)$1	1	62	67	15.0000
)))).	chr17:27413852-27414193(-)$1	1	179	184	15.0000
((...	chr15:72499366-72499604(-)$1	1	1	6	15.0000
(((((	chr12:122269497-122269770(+)$1	1	84	89	15.0000
)))))	chr19:41784895-41785154(+)$1	1	190	195	15.0000
(((((	chr11:75114989-75115252(+)$1	1	27	32	15.0000
(((((	chr17:75484736-75485046(+)$1	1	25	30	15.0000
(..((	chr19:6424637-6424895(-)$1	1	23	28	15.0000
(((((	chr22:21213348-21213581(+)$1	1	94	99	15.0000
(.(..	chr4:1729709-1729956(+)$1	1	118	123	15.0000
...((	chr6:163835693-163836053(+)$1	1	15	20	15.0000
.....	chr17:4575343-4575574(-)$1	1	6	11	15.0000
..((.	chrX:154005149-154005386(+)$1	1	11	16	15.0000
(((.(	chr11:110128398-110128653(-)$1	1	15	20	15.0000
))..)	chr20:16360224-16360505(-)$1	1	204	209	15.0000
)))))	chr7:156931689-156931975(+)$1	1	113	118	15.0000
.....	chr4:174253128-174253345(-)$1	1	54	59	15.0000
)))))	chr3:184052716-184052988(+)$1	1	246	251	15.0000
...))	chr15:72499067-72499322(-)$1	1	229	234	15.0000
(((((	chr12:53691540-53691808(+)$1	1	15	20	15.0000
(((.(	chr5:149829165-149829402(-)$1	1	140	145	15.0000
((..(	chr16:88851443-88851673(-)$1	1	3	8	15.0000
)((((	chr2:20449823-20450062(-)$1	1	189	194	15.0000
(..((	chr17:7145466-7145736(-)$1	1	82	87	15.0000
(.(((	chr4:1713888-1714145(-)$1	1	42	47	15.0000

#PSSM
G : 0.81	g : 0.18	
G : 0.81	g : 0.18	
A : 0.81	a : 0.18	
G : 0.81	g : 0.18	
G : 0.81	g : 0.18	

#score	735.0000000000001
#seq	49
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_transcript_m1_run1.nuc.txt

#NT
UUCUCUUUU	chr16:71956129-71956386(+)$1	257	230	239	18.5178
UUUUCUCUU	chrX:70511279-70511546(+)$1	267	73	82	17.8035
UUUGCUUUU	chr2:204245078-204245351(+)$1	273	188	197	18.2500
uuuuuuuuu	chr17:36364004-36364258(-)$1	254	100	109	18.9642
UUUUGUUUU	chr2:54140355-54140620(-)$1	265	78	87	19.1428
uuuucuuuc	chr3:71616956-71617286(-)$1	330	29	38	18.3392
UUUACUUUU	chr2:192552912-192553178(+)$1	266	41	50	18.2500
uuuucuguu	chr14:39537685-39537975(-)$1	290	227	236	17.8035
UUUUCUUUU	chr10:70516401-70516639(+)$1	238	191	200	22.5357
UUUUCUUCU	chr5:14482545-14482850(+)$1	305	102	111	18.2500
UUUUCAUUU	chr3:169857003-169857384(-)$1	381	99	108	18.3392
UUAUCUUUU	chr1:145096662-145096902(+)$1	240	91	100	18.1607
UUUUCCUUU	chr11:12886258-12886518(+)$1	260	90	99	18.3392
UUCUCUUUU	chr16:89851421-89851684(-)$1	263	93	102	18.5178
UUUUCUUUU	chr7:92165824-92166125(+)$1	301	116	125	22.5357
UUUUCCUUU	chr13:50618766-50619022(-)$1	256	104	113	18.3392
AUUUCUUUU	chr2:190331271-190331512(+)$1	241	87	96	18.1607
UUUUCUUUU	chr5:128440539-128440787(+)$1	248	92	101	22.5357
UUUUCCUUU	chr12:1892894-1893195(+)$1	301	9	18	18.3392
UUUUUUUUU	chr17:63532547-63532806(-)$1	259	17	26	18.9642
UUUUGUUUU	chr10:113926292-113926520(-)$1	228	14	23	19.1428
UUUGCUUUU	chr17:40375541-40375786(-)$1	245	77	86	18.2500
uuuucuuuc	chr17:62476907-62477150(-)$1	243	209	218	18.3392
UGUUCUUUU	chr12:67687842-67688077(+)$1	235	182	191	17.9821
UUUUCUUGU	chr13:20593857-20594160(+)$1	303	89	98	18.0714
UUUUCUUUU	chr2:230682610-230682867(-)$1	257	92	101	22.5357
uuuuguuuu	chr4:139132845-139133084(-)$1	239	4	13	19.1428
UUUUCUUCU	chr1:244595235-244595516(-)$1	281	121	130	18.2500
uucucuuuu	chr12:69217055-69217352(+)$1	297	140	149	18.5178
uuuucuuuc	chr16:75052182-75052468(+)$1	286	129	138	18.3392
UUUACUUUU	chr1:70693979-70694252(+)$1	273	37	46	18.2500
UUUCCUUUU	chr13:20267762-20268014(-)$1	252	191	200	18.2500
UUUUGUUUU	chr2:191762692-191762959(+)$1	267	169	178	19.1428
UUUUUUUUU	chr8:30567279-30567530(-)$1	251	89	98	18.9642
uuuuauuuu	chr2:167129264-167129534(-)$1	270	83	92	18.7857
UUUUCAUUU	chr2:209166840-209167090(+)$1	250	98	107	18.3392
UUUUCUUUU	chr12:28458388-28458644(+)$1	256	89	98	22.5357
UUCUCUUUU	chr18:44402338-44402670(-)$1	332	126	135	18.5178
UUUUCUUUC	chr15:59282908-59283264(+)$1	356	110	119	18.3392
UUUUCUUUU	chr2:223787314-223787556(+)$1	242	100	109	22.5357
UUUCCUUUU	chr12:32859492-32859765(+)$1	273	93	102	18.2500
UUUUGUUUU	chr15:25238766-25239008(+)$1	242	8	17	19.1428
GUUUCUUUu	chr5:38886244-38886517(+)$1	273	228	237	18.1607
UCUUCUUUU	chr7:77240151-77240411(+)$1	260	55	64	17.8928
CUUUCUUUU	chr2:179977432-179977686(-)$1	254	15	24	18.0714
guuucuuuu	chr20:47755542-47755797(-)$1	255	37	46	18.1607
UUUUCAUUU	chr6:2107711-2107987(-)$1	276	230	239	18.3392
UUCUCUUUU	chr4:146460826-146461107(+)$1	281	102	111	18.5178
UUUUCUUUG	chr13:20302294-20302539(-)$1	245	73	82	18.0714
UUUUAUUUU	chr4:155461947-155462216(-)$1	269	3	12	18.7857
UUUUCUUCU	chr4:17868512-17868763(-)$1	251	161	170	18.2500
UGUUCUUUU	chr6:108625861-108626185(+)$1	324	85	94	17.9821
UUUUGUUUU	chr6:4064278-4064500(+)$1	222	139	148	19.1428
UUUUUUUUU	chr8:129108648-129108939(+)$1	291	90	99	18.9642
UUUUCUUAU	chr9:19336155-19336410(+)$1	255	155	164	18.0714

#otherMatches

#Struct PSSM
qqqqqqbb]	chr7:11076714-11077003(+)$1	289	53	62	18.1607
ggggcccqq	chr16:71956129-71956386(+)$1	257	230	239	18.5178
:::::::::	chrX:70511279-70511546(+)$1	267	73	82	17.8035
:eeeeeppp	chr2:204245078-204245351(+)$1	273	188	197	18.2500
777777hhh	chr17:36364004-36364258(-)$1	254	100	109	18.9642
''''bb[==	chr2:54140355-54140620(-)$1	265	78	87	19.1428
:::::::::	chr3:71616956-71617286(-)$1	330	29	38	18.3392
fff[ccc""	chr2:192552912-192553178(+)$1	266	41	50	18.2500
ee::GGGGG	chr14:39537685-39537975(-)$1	290	227	236	17.8035
JJJJJJJJJ	chr10:70516401-70516639(+)$1	238	191	200	22.5357
iiiiiii::	chr5:14482545-14482850(+)$1	305	102	111	18.2500
ppeeeee22	chr3:169857003-169857384(-)$1	381	99	108	18.3392
::::::HHH	chr1:145096662-145096902(+)$1	240	91	100	18.1607
e>>>>>>>>	chr11:12886258-12886518(+)$1	260	90	99	18.3392
f]a::::::	chr16:89851421-89851684(-)$1	263	93	102	18.5178
:::::::::	chr7:92165824-92166125(+)$1	301	116	125	22.5357
JJJJJJJJJ	chr13:50618766-50619022(-)$1	256	104	113	18.3392
nndddd:::	chr2:190331271-190331512(+)$1	241	87	96	18.1607
eeeee:::e	chr5:128440539-128440787(+)$1	248	92	101	22.5357
::eeeee$$	chr12:1892894-1893195(+)$1	301	9	18	18.3392
ddqqqqqqq	chr17:63532547-63532806(-)$1	259	17	26	18.9642
hhh[bb!!d	chr10:113926292-113926520(-)$1	228	14	23	19.1428
DD{BB::::	chr17:40375541-40375786(-)$1	245	77	86	18.2500
>dddd6666	chr17:62476907-62477150(-)$1	243	209	218	18.3392
DDDD:::::	chr12:67687842-67688077(+)$1	235	182	191	17.9821
ooooa]eee	chr13:20593857-20594160(+)$1	303	89	98	18.0714
444bb7777	chr2:230682610-230682867(-)$1	257	92	101	22.5357
:::::::::	chr4:139132845-139133084(-)$1	239	4	13	19.1428
:ffffff[d	chr1:244595235-244595516(-)$1	281	121	130	18.2500
HHH::::::	chr12:69217055-69217352(+)$1	297	140	149	18.5178
:::::::ee	chr16:75052182-75052468(+)$1	286	129	138	18.3392
22dddd22b	chr1:70693979-70694252(+)$1	273	37	46	18.2500
^^^^^^^^^	chr13:20267762-20268014(-)$1	252	191	200	18.2500
99999999c	chr2:191762692-191762959(+)$1	267	169	178	19.1428
d::::::::	chr8:30567279-30567530(-)$1	251	89	98	18.9642
qqqqqqqqb	chr2:167129264-167129534(-)$1	270	83	92	18.7857
::JJJJJJJ	chr2:209166840-209167090(+)$1	250	98	107	18.3392
^^^^^^^^^	chr12:28458388-28458644(+)$1	256	89	98	22.5357
:::dddd""	chr18:44402338-44402670(-)$1	332	126	135	18.5178
#eeeeelll	chr15:59282908-59283264(+)$1	356	110	119	18.3392
ffffooooo	chr2:223787314-223787556(+)$1	242	100	109	22.5357
=======^^	chr12:32859492-32859765(+)$1	273	93	102	18.2500
C{FFFFFFE	chr15:25238766-25239008(+)$1	242	8	17	19.1428
eeeoooooo	chr5:38886244-38886517(+)$1	273	228	237	18.1607
EOOOOOOEE	chr7:77240151-77240411(+)$1	260	55	64	17.8928
:::::::::	chr2:179977432-179977686(-)$1	254	15	24	18.0714
dddd:::::	chr20:47755542-47755797(-)$1	255	37	46	18.1607
YYEEEEE@@	chr6:2107711-2107987(-)$1	276	230	239	18.3392
H::::::::	chr4:146460826-146461107(+)$1	281	102	111	18.5178
=ppppppp=	chr13:20302294-20302539(-)$1	245	73	82	18.0714
EEMMMMFFF	chr4:155461947-155462216(-)$1	269	3	12	18.7857
>>>>>>>>>	chr4:17868512-17868763(-)$1	251	161	170	18.2500
GGGGGGLLL	chr6:108625861-108626185(+)$1	324	85	94	17.9821
fffffffpp	chr6:4064278-4064500(+)$1	222	139	148	19.1428
:::::::dd	chr8:129108648-129108939(+)$1	291	90	99	18.9642
hhhhhqqqq	chr9:19336155-19336410(+)$1	255	155	164	18.0714

#DB
......)).	chr7:11076714-11077003(+)$1	1	53	62	18.1607
(((((((..	chr16:71956129-71956386(+)$1	1	230	239	18.5178
.........	chrX:70511279-70511546(+)$1	1	73	82	17.8035
.(((((...	chr2:204245078-204245351(+)$1	1	188	197	18.2500
......)))	chr17:36364004-36364258(-)$1	1	100	109	18.9642
....((.((	chr2:54140355-54140620(-)$1	1	78	87	19.1428
.........	chr3:71616956-71617286(-)$1	1	29	38	18.3392
(((.(((..	chr2:192552912-192553178(+)$1	1	41	50	18.2500
))..)))))	chr14:39537685-39537975(-)$1	1	227	236	17.8035
)))))))))	chr10:70516401-70516639(+)$1	1	191	200	22.5357
)))))))..	chr5:14482545-14482850(+)$1	1	102	111	18.2500
..)))))..	chr3:169857003-169857384(-)$1	1	99	108	18.3392
......)))	chr1:145096662-145096902(+)$1	1	91	100	18.1607
)........	chr11:12886258-12886518(+)$1	1	90	99	18.3392
).)......	chr16:89851421-89851684(-)$1	1	93	102	18.5178
.........	chr7:92165824-92166125(+)$1	1	116	125	22.5357
(((((((((	chr13:50618766-50619022(-)$1	1	104	113	18.3392
..))))...	chr2:190331271-190331512(+)$1	1	87	96	18.1607
)))))...(	chr5:128440539-128440787(+)$1	1	92	101	22.5357
..(((((..	chr12:1892894-1893195(+)$1	1	9	18	18.3392
((.......	chr17:63532547-63532806(-)$1	1	17	26	18.9642
(((.((..(	chr10:113926292-113926520(-)$1	1	14	23	19.1428
((.((....	chr17:40375541-40375786(-)$1	1	77	86	18.2500
.))))....	chr17:62476907-62477150(-)$1	1	209	218	18.3392
)))).....	chr12:67687842-67688077(+)$1	1	182	191	17.9821
....).)))	chr13:20593857-20594160(+)$1	1	89	98	18.0714
...))....	chr2:230682610-230682867(-)$1	1	92	101	22.5357
.........	chr4:139132845-139133084(-)$1	1	4	13	19.1428
.((((((.(	chr1:244595235-244595516(-)$1	1	121	130	18.2500
)))......	chr12:69217055-69217352(+)$1	1	140	149	18.5178
.......((	chr16:75052182-75052468(+)$1	1	129	138	18.3392
..))))..)	chr1:70693979-70694252(+)$1	1	37	46	18.2500
.........	chr13:20267762-20268014(-)$1	1	191	200	18.2500
........)	chr2:191762692-191762959(+)$1	1	169	178	19.1428
)........	chr8:30567279-30567530(-)$1	1	89	98	18.9642
........)	chr2:167129264-167129534(-)$1	1	83	92	18.7857
..(((((((	chr2:209166840-209167090(+)$1	1	98	107	18.3392
.........	chr12:28458388-28458644(+)$1	1	89	98	22.5357
...((((..	chr18:44402338-44402670(-)$1	1	126	135	18.5178
.(((((...	chr15:59282908-59283264(+)$1	1	110	119	18.3392
((((.....	chr2:223787314-223787556(+)$1	1	100	109	22.5357
(((((((..	chr12:32859492-32859765(+)$1	1	93	102	18.2500
(.(((((((	chr15:25238766-25239008(+)$1	1	8	17	19.1428
(((......	chr5:38886244-38886517(+)$1	1	228	237	18.1607
(......((	chr7:77240151-77240411(+)$1	1	55	64	17.8928
.........	chr2:179977432-179977686(-)$1	1	15	24	18.0714
)))).....	chr20:47755542-47755797(-)$1	1	37	46	18.1607
..)))))..	chr6:2107711-2107987(-)$1	1	230	239	18.3392
(........	chr4:146460826-146461107(+)$1	1	102	111	18.5178
(.......)	chr13:20302294-20302539(-)$1	1	73	82	18.0714
((....(((	chr4:155461947-155462216(-)$1	1	3	12	18.7857
.........	chr4:17868512-17868763(-)$1	1	161	170	18.2500
((((((...	chr6:108625861-108626185(+)$1	1	85	94	17.9821
(((((((..	chr6:4064278-4064500(+)$1	1	139	148	19.1428
.......((	chr8:129108648-129108939(+)$1	1	90	99	18.9642
(((((....	chr9:19336155-19336410(+)$1	1	155	164	18.0714

#PSSM
U : 0.76	u : 0.14	A : 0.03	G : 0.01	C : 0.01	g : 0.01	
U : 0.78	u : 0.16	G : 0.03	C : 0.01	
U : 0.75	u : 0.14	C : 0.07	A : 0.01	c : 0.01	
U : 0.73	u : 0.16	G : 0.03	A : 0.03	C : 0.03	
C : 0.67	c : 0.10	G : 0.08	U : 0.05	u : 0.01	g : 0.01	a : 0.01	A : 0.01	
U : 0.73	u : 0.16	A : 0.05	C : 0.05	
U : 0.82	u : 0.14	C : 0.01	g : 0.01	
U : 0.75	u : 0.16	C : 0.05	G : 0.01	A : 0.01	
U : 0.78	u : 0.12	c : 0.05	C : 0.01	G : 0.01	

#score	1056.2857142857144
#seq	56
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_CDS_m3_run1.nuc.txt

#NT
AGA	chr20:17595280-17595617(-)$1	337	93	96	8.9999
AGA	chr3:184043197-184043442(+)$1	245	68	71	8.9999
AGA	chr3:47870398-47870715(+)$1	317	84	87	8.9999
AGA	chrX:153677168-153677397(+)$1	229	45	48	8.9999
AGA	chr1:156104493-156104737(+)$1	244	112	115	8.9999
AGA	chr19:49657723-49657989(-)$1	266	58	61	8.9999
AGA	chr6:31600200-31600448(+)$1	248	43	46	8.9999
AGA	chr20:39708624-39708837(+)$1	213	51	54	8.9999
AGA	chr11:64537770-64537981(-)$1	211	9	12	8.9999
AGA	chr19:59063198-59063435(-)$1	237	5	8	8.9999
AGA	chr19:41784889-41785159(+)$1	270	53	56	8.9999
AGA	chr14:35522489-35522758(+)$1	269	6	9	8.9999
AGA	chr9:19378707-19378961(-)$1	254	6	9	8.9999
aga	chr16:3781703-3782040(-)$1	337	121	124	8.9999
AGA	chr11:118886462-118886676(-)$1	214	53	56	8.9999
aga	chr1:226349230-226349489(-)$1	259	108	111	8.9999
AGA	chr15:66793337-66793543(-)$1	206	39	42	8.9999
AGA	chr9:86592502-86592765(-)$1	263	3	6	8.9999
AGA	chr2:217054845-217055089(+)$1	244	40	43	8.9999
AGA	chr7:129832360-129832600(-)$1	240	9	12	8.9999
AGA	chr21:33976426-33976694(-)$1	268	35	38	8.9999
AGA	chr8:103299599-103299885(-)$1	286	33	36	8.9999
AGA	chr14:21820710-21821078(-)$1	368	108	111	8.9999
AGA	chr22:21288060-21288467(+)$1	407	57	60	8.9999
AGA	chr1:32797729-32797944(+)$1	215	13	16	8.9999
AGA	chr6:35543577-35543820(-)$1	243	103	106	8.9999
AGA	chr11:63965225-63965449(+)$1	224	98	101	8.9999
AGA	chr17:46929766-46929996(+)$1	230	118	121	8.9999
AGA	chr1:24022267-24022492(+)$1	225	49	52	8.9999
aga	chr2:102472476-102472701(+)$1	225	32	35	8.9999
AGA	chr8:101724887-101725117(-)$1	230	110	113	8.9999
aga	chr9:100777604-100777858(+)$1	254	68	71	8.9999
AGA	chr12:49230313-49230582(-)$1	269	254	257	8.9999
AGA	chr1:155734939-155735209(-)$1	270	52	55	8.9999
AGA	chr4:73964053-73964339(-)$1	286	2	5	8.9999
AGA	chr7:99686812-99687039(+)$1	227	50	53	8.9999
AGA	chr1:186304369-186304581(-)$1	212	43	46	8.9999
AGA	chr2:47388761-47389000(-)$1	239	29	32	8.9999
AGA	chr15:91523492-91523720(-)$1	228	109	112	8.9999
AGA	chr6:44414241-44414499(+)$1	258	29	32	8.9999
AGA	chr11:760108-760339(+)$1	231	28	31	8.9999
AGA	chrX:118763181-118763513(-)$1	332	49	52	8.9999
AGA	chr3:14200002-14200355(-)$1	353	13	16	8.9999
AGA	chr4:56471409-56471616(-)$1	207	57	60	8.9999
AGA	chr15:44061711-44061945(+)$1	234	15	18	8.9999
AGA	chr1:21091768-21092007(-)$1	239	6	9	8.9999
AGA	chr11:71821036-71821372(-)$1	336	21	24	8.9999
AGA	chr7:148515080-148515308(-)$1	228	61	64	8.9999
AGA	chr10:79796930-79797141(+)$1	211	85	88	8.9999
AGA	chr11:5269445-5269755(-)$1	310	85	88	8.9999
AGA	chr1:35652592-35652823(-)$1	231	52	55	8.9999
AGA	chr4:76582007-76582248(-)$1	241	9	12	8.9999
AGA	chr9:134348854-134349123(+)$1	269	8	11	8.9999
AGA	chr5:139876310-139876607(+)$1	297	2	5	8.9999
AGA	chr19:2114024-2114273(-)$1	249	4	7	8.9999
AGA	chr22:38352681-38352951(+)$1	270	143	146	8.9999
AGA	chr19:17311417-17311704(+)$1	287	66	69	8.9999
AGA	chr22:22892055-22892271(-)$1	216	6	9	8.9999
AGA	chr1:93306081-93306290(+)$1	209	24	27	8.9999
AGA	chr8:41521075-41521349(-)$1	274	41	44	8.9999
AGA	chr19:17305339-17305574(+)$1	235	33	36	8.9999
AGA	chr22:38355252-38355550(+)$1	298	14	17	8.9999
AGA	chr1:214820404-214820651(+)$1	247	110	113	8.9999
AGA	chr10:103577488-103577739(-)$1	251	0	3	8.9999
AGA	chr1:110134595-110134876(+)$1	281	46	49	8.9999
AGA	chr11:108810872-108811139(+)$1	267	108	111	8.9999
AGA	chr10:120801464-120801671(-)$1	207	18	21	8.9999
AGA	chr2:101622710-101622965(+)$1	255	11	14	8.9999
AGA	chrX:153677140-153677368(+)$1	228	73	76	8.9999
AGA	chr17:39846326-39846541(+)$1	215	11	14	8.9999
AGA	chr1:182355290-182355545(-)$1	255	6	9	8.9999
AGA	chr19:11224247-11224466(+)$1	219	15	18	8.9999
AGA	chr1:24082258-24082547(+)$1	289	85	88	8.9999
AGA	chr1:205687326-205687667(-)$1	341	13	16	8.9999
AGA	chr2:97544104-97544331(-)$1	227	16	19	8.9999
aga	chr8:95541196-95541530(-)$1	334	66	69	8.9999
AGA	chr22:29935223-29935556(-)$1	333	56	59	8.9999
AGA	chr1:205718994-205719230(-)$1	236	205	208	8.9999
AGA	chr5:10261569-10261837(+)$1	268	14	17	8.9999
AGA	chr2:232325088-232325303(-)$1	215	26	29	8.9999
AGA	chr11:18420883-18421154(+)$1	271	12	15	8.9999
AGA	chr13:21714924-21715235(+)$1	311	31	34	8.9999
AGA	chr2:27605306-27605546(-)$1	240	89	92	8.9999
AGA	chr2:233422534-233422804(+)$1	270	10	13	8.9999
AGA	chr1:226578085-226578376(-)$1	291	70	73	8.9999
aga	chrX:53426509-53426753(-)$1	244	64	67	8.9999
AGA	chrX:70517176-70517411(+)$1	235	0	3	8.9999
AGA	chr19:50001104-50001321(+)$1	217	81	84	8.9999
AGA	chr16:56642445-56642697(+)$1	252	153	156	8.9999
AGA	chr2:145146924-145147191(-)$1	267	17	20	8.9999
AGA	chr17:61824162-61824423(-)$1	261	127	130	8.9999
AGA	chr12:104333209-104333475(+)$1	266	44	47	8.9999
AGA	chr9:75774166-75774440(+)$1	274	38	41	8.9999
aga	chr8:41519288-41519547(-)$1	259	22	25	8.9999
AGA	chr3:33905392-33905722(+)$1	330	28	31	8.9999
AGA	chr9:131022957-131023181(-)$1	224	28	31	8.9999

#otherMatches

#Struct PSSM
DDK	chr13:98667878-98668135(+)$1	257	3	6	8.9999
gg]	chr20:17595280-17595617(-)$1	337	93	96	8.9999
mcc	chr3:184043197-184043442(+)$1	245	68	71	8.9999
:ee	chr3:47870398-47870715(+)$1	317	84	87	8.9999
]ad	chrX:153677168-153677397(+)$1	229	45	48	8.9999
euu	chr1:156104493-156104737(+)$1	244	112	115	8.9999
:::	chr19:49657723-49657989(-)$1	266	58	61	8.9999
ff"	chr6:31600200-31600448(+)$1	248	43	46	8.9999
nnh	chr20:39708624-39708837(+)$1	213	51	54	8.9999
BKK	chr11:64537770-64537981(-)$1	211	9	12	8.9999
DD{	chr19:59063198-59063435(-)$1	237	5	8	8.9999
bb]	chr19:41784889-41785159(+)$1	270	53	56	8.9999
FFF	chr14:35522489-35522758(+)$1	269	6	9	8.9999
[bb	chr9:19378707-19378961(-)$1	254	6	9	8.9999
ee2	chr16:3781703-3782040(-)$1	337	121	124	8.9999
nnn	chr11:118886462-118886676(-)$1	214	53	56	8.9999
fff	chr1:226349230-226349489(-)$1	259	108	111	8.9999
ff:	chr15:66793337-66793543(-)$1	206	39	42	8.9999
:::	chr9:86592502-86592765(-)$1	263	3	6	8.9999
uuu	chr2:217054845-217055089(+)$1	244	40	43	8.9999
G{C	chr7:129832360-129832600(-)$1	240	9	12	8.9999
ggg	chr21:33976426-33976694(-)$1	268	35	38	8.9999
d!!	chr8:103299599-103299885(-)$1	286	33	36	8.9999
cnn	chr14:21820710-21821078(-)$1	368	108	111	8.9999
dd:	chr22:21288060-21288467(+)$1	407	57	60	8.9999
mmd	chr1:32797729-32797944(+)$1	215	13	16	8.9999
fff	chr6:35543577-35543820(-)$1	243	103	106	8.9999
:dd	chr11:63965225-63965449(+)$1	224	98	101	8.9999
eee	chr17:46929766-46929996(+)$1	230	118	121	8.9999
JKK	chr1:24022267-24022492(+)$1	225	49	52	8.9999
:::	chr2:102472476-102472701(+)$1	225	32	35	8.9999
ddd	chr8:101724887-101725117(-)$1	230	110	113	8.9999
:::	chr9:100777604-100777858(+)$1	254	68	71	8.9999
eee	chr12:49230313-49230582(-)$1	269	254	257	8.9999
www	chr1:155734939-155735209(-)$1	270	52	55	8.9999
:EE	chr4:73964053-73964339(-)$1	286	2	5	8.9999
2bb	chr7:99686812-99687039(+)$1	227	50	53	8.9999
cc$	chr1:186304369-186304581(-)$1	212	43	46	8.9999
::f	chr2:47388761-47389000(-)$1	239	29	32	8.9999
qqq	chr15:91523492-91523720(-)$1	228	109	112	8.9999
Dcc	chr6:44414241-44414499(+)$1	258	29	32	8.9999
bb[	chr11:760108-760339(+)$1	231	28	31	8.9999
]dd	chrX:118763181-118763513(-)$1	332	49	52	8.9999
:::	chr3:14200002-14200355(-)$1	353	13	16	8.9999
ggg	chr4:56471409-56471616(-)$1	207	57	60	8.9999
BB{	chr15:44061711-44061945(+)$1	234	15	18	8.9999
qqq	chr1:21091768-21092007(-)$1	239	6	9	8.9999
:::	chr11:71821036-71821372(-)$1	336	21	24	8.9999
mme	chr7:148515080-148515308(-)$1	228	61	64	8.9999
F::	chr10:79796930-79797141(+)$1	211	85	88	8.9999
:::	chr11:5269445-5269755(-)$1	310	85	88	8.9999
===	chr1:35652592-35652823(-)$1	231	52	55	8.9999
===	chr4:76582007-76582248(-)$1	241	9	12	8.9999
C{C	chr9:134348854-134349123(+)$1	269	8	11	8.9999
:::	chr5:139876310-139876607(+)$1	297	2	5	8.9999
CCC	chr19:2114024-2114273(-)$1	249	4	7	8.9999
33b	chr22:38352681-38352951(+)$1	270	143	146	8.9999
ppp	chr19:17311417-17311704(+)$1	287	66	69	8.9999
GGG	chr22:22892055-22892271(-)$1	216	6	9	8.9999
l==	chr1:93306081-93306290(+)$1	209	24	27	8.9999
[a[	chr8:41521075-41521349(-)$1	274	41	44	8.9999
"""	chr19:17305339-17305574(+)$1	235	33	36	8.9999
ddd	chr22:38355252-38355550(+)$1	298	14	17	8.9999
444	chr1:214820404-214820651(+)$1	247	110	113	8.9999
:cc	chr10:103577488-103577739(-)$1	251	0	3	8.9999
ccc	chr1:110134595-110134876(+)$1	281	46	49	8.9999
www	chr11:108810872-108811139(+)$1	267	108	111	8.9999
cc(	chr10:120801464-120801671(-)$1	207	18	21	8.9999
^^^	chr2:101622710-101622965(+)$1	255	11	14	8.9999
:DD	chrX:153677140-153677368(+)$1	228	73	76	8.9999
eeq	chr17:39846326-39846541(+)$1	215	11	14	8.9999
{DD	chr1:182355290-182355545(-)$1	255	6	9	8.9999
GGG	chr19:11224247-11224466(+)$1	219	15	18	8.9999
rrr	chr1:24082258-24082547(+)$1	289	85	88	8.9999
dd]	chr1:205687326-205687667(-)$1	341	13	16	8.9999
[cc	chr2:97544104-97544331(-)$1	227	16	19	8.9999
fff	chr8:95541196-95541530(-)$1	334	66	69	8.9999
FFF	chr22:29935223-29935556(-)$1	333	56	59	8.9999
EEE	chr1:205718994-205719230(-)$1	236	205	208	8.9999
lff	chr5:10261569-10261837(+)$1	268	14	17	8.9999
DLL	chr2:232325088-232325303(-)$1	215	26	29	8.9999
ppp	chr11:18420883-18421154(+)$1	271	12	15	8.9999
[ff	chr13:21714924-21715235(+)$1	311	31	34	8.9999
nnd	chr2:27605306-27605546(-)$1	240	89	92	8.9999
CC:	chr2:233422534-233422804(+)$1	270	10	13	8.9999
ooo	chr1:226578085-226578376(-)$1	291	70	73	8.9999
dd[	chrX:53426509-53426753(-)$1	244	64	67	8.9999
ggg	chrX:70517176-70517411(+)$1	235	0	3	8.9999
:dd	chr19:50001104-50001321(+)$1	217	81	84	8.9999
ggg	chr16:56642445-56642697(+)$1	252	153	156	8.9999
:::	chr2:145146924-145147191(-)$1	267	17	20	8.9999
:::	chr17:61824162-61824423(-)$1	261	127	130	8.9999
HHH	chr12:104333209-104333475(+)$1	266	44	47	8.9999
bnn	chr9:75774166-75774440(+)$1	274	38	41	8.9999
e::	chr8:41519288-41519547(-)$1	259	22	25	8.9999
iii	chr3:33905392-33905722(+)$1	330	28	31	8.9999
:::	chr9:131022957-131023181(-)$1	224	28	31	8.9999

#DB
((.	chr13:98667878-98668135(+)$1	1	3	6	8.9999
)).	chr20:17595280-17595617(-)$1	1	93	96	8.9999
.))	chr3:184043197-184043442(+)$1	1	68	71	8.9999
.((	chr3:47870398-47870715(+)$1	1	84	87	8.9999
.))	chrX:153677168-153677397(+)$1	1	45	48	8.9999
(..	chr1:156104493-156104737(+)$1	1	112	115	8.9999
...	chr19:49657723-49657989(-)$1	1	58	61	8.9999
((.	chr6:31600200-31600448(+)$1	1	43	46	8.9999
..)	chr20:39708624-39708837(+)$1	1	51	54	8.9999
(..	chr11:64537770-64537981(-)$1	1	9	12	8.9999
((.	chr19:59063198-59063435(-)$1	1	5	8	8.9999
)).	chr19:41784889-41785159(+)$1	1	53	56	8.9999
(((	chr14:35522489-35522758(+)$1	1	6	9	8.9999
.((	chr9:19378707-19378961(-)$1	1	6	9	8.9999
)).	chr16:3781703-3782040(-)$1	1	121	124	8.9999
...	chr11:118886462-118886676(-)$1	1	53	56	8.9999
)))	chr1:226349230-226349489(-)$1	1	108	111	8.9999
)).	chr15:66793337-66793543(-)$1	1	39	42	8.9999
...	chr9:86592502-86592765(-)$1	1	3	6	8.9999
...	chr2:217054845-217055089(+)$1	1	40	43	8.9999
(.(	chr7:129832360-129832600(-)$1	1	9	12	8.9999
)))	chr21:33976426-33976694(-)$1	1	35	38	8.9999
(..	chr8:103299599-103299885(-)$1	1	33	36	8.9999
(..	chr14:21820710-21821078(-)$1	1	108	111	8.9999
)).	chr22:21288060-21288467(+)$1	1	57	60	8.9999
..)	chr1:32797729-32797944(+)$1	1	13	16	8.9999
)))	chr6:35543577-35543820(-)$1	1	103	106	8.9999
.((	chr11:63965225-63965449(+)$1	1	98	101	8.9999
)))	chr17:46929766-46929996(+)$1	1	118	121	8.9999
(..	chr1:24022267-24022492(+)$1	1	49	52	8.9999
...	chr2:102472476-102472701(+)$1	1	32	35	8.9999
)))	chr8:101724887-101725117(-)$1	1	110	113	8.9999
...	chr9:100777604-100777858(+)$1	1	68	71	8.9999
)))	chr12:49230313-49230582(-)$1	1	254	257	8.9999
...	chr1:155734939-155735209(-)$1	1	52	55	8.9999
.((	chr4:73964053-73964339(-)$1	1	2	5	8.9999
.))	chr7:99686812-99687039(+)$1	1	50	53	8.9999
((.	chr1:186304369-186304581(-)$1	1	43	46	8.9999
..(	chr2:47388761-47389000(-)$1	1	29	32	8.9999
...	chr15:91523492-91523720(-)$1	1	109	112	8.9999
(((	chr6:44414241-44414499(+)$1	1	29	32	8.9999
((.	chr11:760108-760339(+)$1	1	28	31	8.9999
.))	chrX:118763181-118763513(-)$1	1	49	52	8.9999
...	chr3:14200002-14200355(-)$1	1	13	16	8.9999
(((	chr4:56471409-56471616(-)$1	1	57	60	8.9999
((.	chr15:44061711-44061945(+)$1	1	15	18	8.9999
...	chr1:21091768-21092007(-)$1	1	6	9	8.9999
...	chr11:71821036-71821372(-)$1	1	21	24	8.9999
..)	chr7:148515080-148515308(-)$1	1	61	64	8.9999
(..	chr10:79796930-79797141(+)$1	1	85	88	8.9999
...	chr11:5269445-5269755(-)$1	1	85	88	8.9999
(((	chr1:35652592-35652823(-)$1	1	52	55	8.9999
(((	chr4:76582007-76582248(-)$1	1	9	12	8.9999
(.(	chr9:134348854-134349123(+)$1	1	8	11	8.9999
...	chr5:139876310-139876607(+)$1	1	2	5	8.9999
(((	chr19:2114024-2114273(-)$1	1	4	7	8.9999
..)	chr22:38352681-38352951(+)$1	1	143	146	8.9999
...	chr19:17311417-17311704(+)$1	1	66	69	8.9999
(((	chr22:22892055-22892271(-)$1	1	6	9	8.9999
.))	chr1:93306081-93306290(+)$1	1	24	27	8.9999
.(.	chr8:41521075-41521349(-)$1	1	41	44	8.9999
...	chr19:17305339-17305574(+)$1	1	33	36	8.9999
(((	chr22:38355252-38355550(+)$1	1	14	17	8.9999
...	chr1:214820404-214820651(+)$1	1	110	113	8.9999
.((	chr10:103577488-103577739(-)$1	1	0	3	8.9999
)))	chr1:110134595-110134876(+)$1	1	46	49	8.9999
...	chr11:108810872-108811139(+)$1	1	108	111	8.9999
((.	chr10:120801464-120801671(-)$1	1	18	21	8.9999
...	chr2:101622710-101622965(+)$1	1	11	14	8.9999
.((	chrX:153677140-153677368(+)$1	1	73	76	8.9999
((.	chr17:39846326-39846541(+)$1	1	11	14	8.9999
.((	chr1:182355290-182355545(-)$1	1	6	9	8.9999
(((	chr19:11224247-11224466(+)$1	1	15	18	8.9999
...	chr1:24082258-24082547(+)$1	1	85	88	8.9999
)).	chr1:205687326-205687667(-)$1	1	13	16	8.9999
.((	chr2:97544104-97544331(-)$1	1	16	19	8.9999
)))	chr8:95541196-95541530(-)$1	1	66	69	8.9999
(((	chr22:29935223-29935556(-)$1	1	56	59	8.9999
)))	chr1:205718994-205719230(-)$1	1	205	208	8.9999
.))	chr5:10261569-10261837(+)$1	1	14	17	8.9999
(..	chr2:232325088-232325303(-)$1	1	26	29	8.9999
...	chr11:18420883-18421154(+)$1	1	12	15	8.9999
.((	chr13:21714924-21715235(+)$1	1	31	34	8.9999
..)	chr2:27605306-27605546(-)$1	1	89	92	8.9999
((.	chr2:233422534-233422804(+)$1	1	10	13	8.9999
...	chr1:226578085-226578376(-)$1	1	70	73	8.9999
((.	chrX:53426509-53426753(-)$1	1	64	67	8.9999
(((	chrX:70517176-70517411(+)$1	1	0	3	8.9999
.((	chr19:50001104-50001321(+)$1	1	81	84	8.9999
)))	chr16:56642445-56642697(+)$1	1	153	156	8.9999
...	chr2:145146924-145147191(-)$1	1	17	20	8.9999
...	chr17:61824162-61824423(-)$1	1	127	130	8.9999
(((	chr12:104333209-104333475(+)$1	1	44	47	8.9999
(..	chr9:75774166-75774440(+)$1	1	38	41	8.9999
)..	chr8:41519288-41519547(-)$1	1	22	25	8.9999
(((	chr3:33905392-33905722(+)$1	1	28	31	8.9999
...	chr9:131022957-131023181(-)$1	1	28	31	8.9999

#PSSM
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	
A : 0.92	a : 0.07	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_UTR_m2_run2.nuc.txt

#NT
UGC	chr19:42364227-42364460(+)$1	233	74	77	8.9999
UGC	chr11:75111704-75111944(+)$1	240	16	19	8.9999
UGC	chr11:118279650-118279935(+)$1	285	49	52	8.9999
UGC	chr1:8921264-8921549(-)$1	285	94	97	8.9999
UGC	chr11:75116557-75116775(+)$1	218	2	5	8.9999
UGC	chr3:197676988-197677192(+)$1	204	7	10	8.9999
UGC	chr16:204289-204594(+)$1	305	139	142	8.9999
UGC	chr8:125562068-125562300(+)$1	232	12	15	8.9999
UGC	chr2:176042802-176043033(-)$1	231	8	11	8.9999
UGC	chr8:11696008-11696249(+)$1	241	27	30	8.9999
ugc	chr1:150192912-150193165(-)$1	253	2	5	8.9999
UGC	chr7:75695605-75695855(+)$1	250	59	62	8.9999
UGC	chr11:315102-315355(+)$1	253	26	29	8.9999
UGC	chr6:33377461-33377722(+)$1	261	106	109	8.9999
UGC	chr12:21791186-21791433(-)$1	247	125	128	8.9999
UGC	chr10:74035230-74035516(+)$1	286	50	53	8.9999
UGC	chrX:119010432-119010666(+)$1	234	119	122	8.9999
UGC	chr14:102547810-102548056(-)$1	246	164	167	8.9999
UGC	chr7:100276510-100276822(+)$1	312	35	38	8.9999
UGC	chr7:56169257-56169498(-)$1	241	87	90	8.9999
UGC	chr16:2289817-2290077(-)$1	260	1	4	8.9999
UGC	chr6:31694791-31695084(-)$1	293	38	41	8.9999
UGC	chr16:56643140-56643397(+)$1	257	11	14	8.9999
UGC	chr19:58898591-58898809(+)$1	218	172	175	8.9999
UGC	chr16:89627017-89627221(+)$1	204	37	40	8.9999
UGC	chr19:54704628-54704839(+)$1	211	28	31	8.9999
UGC	chr11:65622664-65622907(-)$1	243	3	6	8.9999
UGC	chr19:18499666-18499931(+)$1	265	64	67	8.9999
UGC	chr11:840114-840379(-)$1	265	34	37	8.9999
UGC	chr17:4848897-4849130(-)$1	233	44	47	8.9999
UGC	chr3:128888890-128889156(-)$1	266	22	25	8.9999
UGC	chr2:217363467-217363701(+)$1	234	81	84	8.9999
UGC	chr12:54058874-54059141(-)$1	267	34	37	8.9999
UGC	chr11:75115803-75116013(+)$1	210	26	29	8.9999
UGC	chr3:197677706-197677937(+)$1	231	17	20	8.9999
UGC	chr19:50437002-50437268(+)$1	266	194	197	8.9999
UGC	chr2:44115504-44115799(-)$1	295	21	24	8.9999
UGC	chr19:19010250-19010532(-)$1	282	19	22	8.9999
UGC	chr12:49666910-49667151(+)$1	241	27	30	8.9999
UGC	chr7:158424051-158424344(-)$1	293	41	44	8.9999
UGC	chr16:88709610-88709920(-)$1	310	87	90	8.9999
UGC	chr4:56461337-56461565(-)$1	228	14	17	8.9999
UGC	chr12:112847290-112847509(-)$1	219	26	29	8.9999
UGC	chrX:153609563-153609816(+)$1	253	51	54	8.9999
UGC	chr19:8387055-8387275(+)$1	220	49	52	8.9999
UGC	chr11:63743841-63744091(+)$1	250	17	20	8.9999
UGC	chr15:66795761-66795968(-)$1	207	7	10	8.9999
UGC	chr14:69847059-69847330(-)$1	271	38	41	8.9999
UGC	chr12:57031882-57032118(-)$1	236	44	47	8.9999
UGC	chr8:99057634-99057850(-)$1	216	0	3	8.9999
UGC	chr9:140137939-140138242(+)$1	303	11	14	8.9999
UGC	chr11:5274406-5274688(-)$1	282	66	69	8.9999
UGC	chr10:73576107-73576341(-)$1	234	72	75	8.9999
UGC	chr2:98264508-98264744(+)$1	236	9	12	8.9999
UGC	chr22:21998434-21998668(+)$1	234	8	11	8.9999
UGC	chr16:18803097-18803375(-)$1	278	83	86	8.9999
UGC	chr2:55459842-55460064(+)$1	222	11	14	8.9999
UGC	chr14:103985960-103986256(-)$1	296	39	42	8.9999
UGC	chr7:75933409-75933660(+)$1	251	50	53	8.9999
UGC	chr7:75695655-75695895(+)$1	240	9	12	8.9999
UGC	chr16:227306-227531(+)$1	225	34	37	8.9999
UGC	chr11:9466843-9467089(+)$1	246	49	52	8.9999
UGC	chr1:28564460-28564700(+)$1	240	9	12	8.9999
UGC	chr11:75116575-75116818(+)$1	243	64	67	8.9999
UGC	chr16:2820994-2821290(+)$1	296	106	109	8.9999
UGC	chr11:61557156-61557413(-)$1	257	8	11	8.9999
UGC	chr15:44086058-44086290(+)$1	232	30	33	8.9999
UGC	chr8:101734160-101734372(-)$1	212	14	17	8.9999
UGC	chr8:23429820-23430072(+)$1	252	35	38	8.9999
UGC	chr9:139745301-139745556(+)$1	255	17	20	8.9999
UGC	chr16:88876057-88876305(-)$1	248	8	11	8.9999
UGC	chr16:227331-227541(+)$1	210	9	12	8.9999
UGC	chr16:1749181-1749427(+)$1	246	5	8	8.9999
UGC	chr19:39926454-39926687(-)$1	233	44	47	8.9999
UGC	chr1:154248172-154248419(+)$1	247	53	56	8.9999
UGC	chr11:5291016-5291268(-)$1	252	100	103	8.9999
UGC	chr12:112846332-112846562(-)$1	230	69	72	8.9999
UGC	chr9:19380098-19380330(-)$1	232	12	15	8.9999
UGC	chr3:9519598-9519849(+)$1	251	10	13	8.9999
UGC	chr17:79991706-79991976(+)$1	270	161	164	8.9999
UGC	chr11:5289504-5289750(-)$1	246	15	18	8.9999
UGC	chr5:177022793-177023064(+)$1	271	16	19	8.9999
UGC	chr6:8079828-8080068(-)$1	240	121	124	8.9999
UGC	chr11:8707229-8707476(+)$1	247	150	153	8.9999
UGC	chr15:44063392-44063642(+)$1	250	187	190	8.9999
UGC	chr10:79793523-79793733(+)$1	210	62	65	8.9999
UGC	chr17:39847726-39847982(+)$1	256	36	39	8.9999
UGC	chr11:5289550-5289799(-)$1	249	36	39	8.9999
UGC	chr1:20978646-20978924(-)$1	278	21	24	8.9999
UGC	chr19:44111533-44111822(-)$1	289	13	16	8.9999
UGC	chr20:60963423-60963648(+)$1	225	42	45	8.9999
UGC	chr11:812698-812942(+)$1	244	31	34	8.9999
UGC	chr18:19209003-19209278(+)$1	275	20	23	8.9999
UGC	chr19:42375316-42375547(+)$1	231	9	12	8.9999
UGC	chr8:99057650-99057871(-)$1	221	7	10	8.9999

#otherMatches

#Struct PSSM
fmm	chr19:46190663-46190958(-)$1	295	92	95	8.9999
{EE	chr19:42364227-42364460(+)$1	233	74	77	8.9999
KDD	chr11:75111704-75111944(+)$1	240	16	19	8.9999
dgg	chr11:118279650-118279935(+)$1	285	49	52	8.9999
LBB	chr1:8921264-8921549(-)$1	285	94	97	8.9999
c[c	chr11:75116557-75116775(+)$1	218	2	5	8.9999
:::	chr3:197676988-197677192(+)$1	204	7	10	8.9999
mmm	chr16:204289-204594(+)$1	305	139	142	8.9999
ddd	chr8:125562068-125562300(+)$1	232	12	15	8.9999
GGG	chr2:176042802-176043033(-)$1	231	8	11	8.9999
CAF	chr8:11696008-11696249(+)$1	241	27	30	8.9999
EEE	chr1:150192912-150193165(-)$1	253	2	5	8.9999
FFF	chr7:75695605-75695855(+)$1	250	59	62	8.9999
ddd	chr11:315102-315355(+)$1	253	26	29	8.9999
d[d	chr6:33377461-33377722(+)$1	261	106	109	8.9999
:::	chr12:21791186-21791433(-)$1	247	125	128	8.9999
ggg	chr10:74035230-74035516(+)$1	286	50	53	8.9999
ppp	chrX:119010432-119010666(+)$1	234	119	122	8.9999
ddd	chr14:102547810-102548056(-)$1	246	164	167	8.9999
$cc	chr7:100276510-100276822(+)$1	312	35	38	8.9999
###	chr7:56169257-56169498(-)$1	241	87	90	8.9999
ddd	chr16:2289817-2290077(-)$1	260	1	4	8.9999
2ii	chr6:31694791-31695084(-)$1	293	38	41	8.9999
DD{	chr16:56643140-56643397(+)$1	257	11	14	8.9999
ooe	chr19:58898591-58898809(+)$1	218	172	175	8.9999
hhh	chr16:89627017-89627221(+)$1	204	37	40	8.9999
ccc	chr19:54704628-54704839(+)$1	211	28	31	8.9999
:::	chr11:65622664-65622907(-)$1	243	3	6	8.9999
fff	chr19:18499666-18499931(+)$1	265	64	67	8.9999
{CC	chr11:840114-840379(-)$1	265	34	37	8.9999
NCC	chr17:4848897-4849130(-)$1	233	44	47	8.9999
NND	chr3:128888890-128889156(-)$1	266	22	25	8.9999
dd[	chr2:217363467-217363701(+)$1	234	81	84	8.9999
KDD	chr12:54058874-54059141(-)$1	267	34	37	8.9999
:::	chr11:75115803-75116013(+)$1	210	26	29	8.9999
%ii	chr3:197677706-197677937(+)$1	231	17	20	8.9999
b""	chr19:50437002-50437268(+)$1	266	194	197	8.9999
:JJ	chr2:44115504-44115799(-)$1	295	21	24	8.9999
III	chr19:19010250-19010532(-)$1	282	19	22	8.9999
2cc	chr12:49666910-49667151(+)$1	241	27	30	8.9999
ccc	chr7:158424051-158424344(-)$1	293	41	44	8.9999
dd]	chr16:88709610-88709920(-)$1	310	87	90	8.9999
:::	chr4:56461337-56461565(-)$1	228	14	17	8.9999
GGG	chr12:112847290-112847509(-)$1	219	26	29	8.9999
ggg	chrX:153609563-153609816(+)$1	253	51	54	8.9999
mmm	chr19:8387055-8387275(+)$1	220	49	52	8.9999
ddd	chr11:63743841-63744091(+)$1	250	17	20	8.9999
DDL	chr15:66795761-66795968(-)$1	207	7	10	8.9999
eee	chr14:69847059-69847330(-)$1	271	38	41	8.9999
ccc	chr12:57031882-57032118(-)$1	236	44	47	8.9999
:::	chr8:99057634-99057850(-)$1	216	0	3	8.9999
{CC	chr9:140137939-140138242(+)$1	303	11	14	8.9999
c33	chr11:5274406-5274688(-)$1	282	66	69	8.9999
[cc	chr10:73576107-73576341(-)$1	234	72	75	8.9999
ddd	chr2:98264508-98264744(+)$1	236	9	12	8.9999
hha	chr22:21998434-21998668(+)$1	234	8	11	8.9999
ggg	chr16:18803097-18803375(-)$1	278	83	86	8.9999
qqq	chr2:55459842-55460064(+)$1	222	11	14	8.9999
bdd	chr14:103985960-103986256(-)$1	296	39	42	8.9999
{CC	chr7:75933409-75933660(+)$1	251	50	53	8.9999
{GG	chr7:75695655-75695895(+)$1	240	9	12	8.9999
:gg	chr16:227306-227531(+)$1	225	34	37	8.9999
d[a	chr11:9466843-9467089(+)$1	246	49	52	8.9999
cco	chr1:28564460-28564700(+)$1	240	9	12	8.9999
ggg	chr11:75116575-75116818(+)$1	243	64	67	8.9999
gg]	chr16:2820994-2821290(+)$1	296	106	109	8.9999
EEE	chr11:61557156-61557413(-)$1	257	8	11	8.9999
ddd	chr15:44086058-44086290(+)$1	232	30	33	8.9999
EEE	chr8:101734160-101734372(-)$1	212	14	17	8.9999
[bb	chr8:23429820-23430072(+)$1	252	35	38	8.9999
fff	chr9:139745301-139745556(+)$1	255	17	20	8.9999
mee	chr16:88876057-88876305(-)$1	248	8	11	8.9999
:gg	chr16:227331-227541(+)$1	210	9	12	8.9999
fff	chr16:1749181-1749427(+)$1	246	5	8	8.9999
ddd	chr19:39926454-39926687(-)$1	233	44	47	8.9999
!dd	chr1:154248172-154248419(+)$1	247	53	56	8.9999
eee	chr11:5291016-5291268(-)$1	252	100	103	8.9999
JJJ	chr12:112846332-112846562(-)$1	230	69	72	8.9999
!!b	chr9:19380098-19380330(-)$1	232	12	15	8.9999
J{D	chr3:9519598-9519849(+)$1	251	10	13	8.9999
eee	chr17:79991706-79991976(+)$1	270	161	164	8.9999
eee	chr11:5289504-5289750(-)$1	246	15	18	8.9999
ooo	chr5:177022793-177023064(+)$1	271	16	19	8.9999
===	chr6:8079828-8080068(-)$1	240	121	124	8.9999
zzz	chr11:8707229-8707476(+)$1	247	150	153	8.9999
rcc	chr15:44063392-44063642(+)$1	250	187	190	8.9999
ee[	chr10:79793523-79793733(+)$1	210	62	65	8.9999
ppp	chr17:39847726-39847982(+)$1	256	36	39	8.9999
hh]	chr11:5289550-5289799(-)$1	249	36	39	8.9999
HHH	chr1:20978646-20978924(-)$1	278	21	24	8.9999
ddd	chr19:44111533-44111822(-)$1	289	13	16	8.9999
iii	chr20:60963423-60963648(+)$1	225	42	45	8.9999
d]c	chr11:812698-812942(+)$1	244	31	34	8.9999
ddd	chr18:19209003-19209278(+)$1	275	20	23	8.9999
ddd	chr19:42375316-42375547(+)$1	231	9	12	8.9999
mbb	chr8:99057650-99057871(-)$1	221	7	10	8.9999

#DB
(..	chr19:46190663-46190958(-)$1	1	92	95	8.9999
.((	chr19:42364227-42364460(+)$1	1	74	77	8.9999
.((	chr11:75111704-75111944(+)$1	1	16	19	8.9999
(((	chr11:118279650-118279935(+)$1	1	49	52	8.9999
.((	chr1:8921264-8921549(-)$1	1	94	97	8.9999
(.(	chr11:75116557-75116775(+)$1	1	2	5	8.9999
...	chr3:197676988-197677192(+)$1	1	7	10	8.9999
...	chr16:204289-204594(+)$1	1	139	142	8.9999
(((	chr8:125562068-125562300(+)$1	1	12	15	8.9999
(((	chr2:176042802-176043033(-)$1	1	8	11	8.9999
(((	chr8:11696008-11696249(+)$1	1	27	30	8.9999
(((	chr1:150192912-150193165(-)$1	1	2	5	8.9999
(((	chr7:75695605-75695855(+)$1	1	59	62	8.9999
(((	chr11:315102-315355(+)$1	1	26	29	8.9999
(.(	chr6:33377461-33377722(+)$1	1	106	109	8.9999
...	chr12:21791186-21791433(-)$1	1	125	128	8.9999
)))	chr10:74035230-74035516(+)$1	1	50	53	8.9999
...	chrX:119010432-119010666(+)$1	1	119	122	8.9999
(((	chr14:102547810-102548056(-)$1	1	164	167	8.9999
.((	chr7:100276510-100276822(+)$1	1	35	38	8.9999
...	chr7:56169257-56169498(-)$1	1	87	90	8.9999
(((	chr16:2289817-2290077(-)$1	1	1	4	8.9999
.))	chr6:31694791-31695084(-)$1	1	38	41	8.9999
((.	chr16:56643140-56643397(+)$1	1	11	14	8.9999
..)	chr19:58898591-58898809(+)$1	1	172	175	8.9999
(((	chr16:89627017-89627221(+)$1	1	37	40	8.9999
(((	chr19:54704628-54704839(+)$1	1	28	31	8.9999
...	chr11:65622664-65622907(-)$1	1	3	6	8.9999
(((	chr19:18499666-18499931(+)$1	1	64	67	8.9999
.((	chr11:840114-840379(-)$1	1	34	37	8.9999
.((	chr17:4848897-4849130(-)$1	1	44	47	8.9999
..(	chr3:128888890-128889156(-)$1	1	22	25	8.9999
((.	chr2:217363467-217363701(+)$1	1	81	84	8.9999
.((	chr12:54058874-54059141(-)$1	1	34	37	8.9999
...	chr11:75115803-75116013(+)$1	1	26	29	8.9999
.((	chr3:197677706-197677937(+)$1	1	17	20	8.9999
(..	chr19:50437002-50437268(+)$1	1	194	197	8.9999
.((	chr2:44115504-44115799(-)$1	1	21	24	8.9999
(((	chr19:19010250-19010532(-)$1	1	19	22	8.9999
.))	chr12:49666910-49667151(+)$1	1	27	30	8.9999
)))	chr7:158424051-158424344(-)$1	1	41	44	8.9999
)).	chr16:88709610-88709920(-)$1	1	87	90	8.9999
...	chr4:56461337-56461565(-)$1	1	14	17	8.9999
(((	chr12:112847290-112847509(-)$1	1	26	29	8.9999
(((	chrX:153609563-153609816(+)$1	1	51	54	8.9999
...	chr19:8387055-8387275(+)$1	1	49	52	8.9999
(((	chr11:63743841-63744091(+)$1	1	17	20	8.9999
((.	chr15:66795761-66795968(-)$1	1	7	10	8.9999
(((	chr14:69847059-69847330(-)$1	1	38	41	8.9999
(((	chr12:57031882-57032118(-)$1	1	44	47	8.9999
...	chr8:99057634-99057850(-)$1	1	0	3	8.9999
.((	chr9:140137939-140138242(+)$1	1	11	14	8.9999
)..	chr11:5274406-5274688(-)$1	1	66	69	8.9999
.((	chr10:73576107-73576341(-)$1	1	72	75	8.9999
(((	chr2:98264508-98264744(+)$1	1	9	12	8.9999
(((	chr22:21998434-21998668(+)$1	1	8	11	8.9999
)))	chr16:18803097-18803375(-)$1	1	83	86	8.9999
...	chr2:55459842-55460064(+)$1	1	11	14	8.9999
)))	chr14:103985960-103986256(-)$1	1	39	42	8.9999
.((	chr7:75933409-75933660(+)$1	1	50	53	8.9999
.((	chr7:75695655-75695895(+)$1	1	9	12	8.9999
.((	chr16:227306-227531(+)$1	1	34	37	8.9999
(.(	chr11:9466843-9467089(+)$1	1	49	52	8.9999
((.	chr1:28564460-28564700(+)$1	1	9	12	8.9999
(((	chr11:75116575-75116818(+)$1	1	64	67	8.9999
)).	chr16:2820994-2821290(+)$1	1	106	109	8.9999
(((	chr11:61557156-61557413(-)$1	1	8	11	8.9999
)))	chr15:44086058-44086290(+)$1	1	30	33	8.9999
(((	chr8:101734160-101734372(-)$1	1	14	17	8.9999
.((	chr8:23429820-23430072(+)$1	1	35	38	8.9999
(((	chr9:139745301-139745556(+)$1	1	17	20	8.9999
.))	chr16:88876057-88876305(-)$1	1	8	11	8.9999
.((	chr16:227331-227541(+)$1	1	9	12	8.9999
(((	chr16:1749181-1749427(+)$1	1	5	8	8.9999
(((	chr19:39926454-39926687(-)$1	1	44	47	8.9999
.((	chr1:154248172-154248419(+)$1	1	53	56	8.9999
)))	chr11:5291016-5291268(-)$1	1	100	103	8.9999
(((	chr12:112846332-112846562(-)$1	1	69	72	8.9999
..(	chr9:19380098-19380330(-)$1	1	12	15	8.9999
(.(	chr3:9519598-9519849(+)$1	1	10	13	8.9999
)))	chr17:79991706-79991976(+)$1	1	161	164	8.9999
)))	chr11:5289504-5289750(-)$1	1	15	18	8.9999
...	chr5:177022793-177023064(+)$1	1	16	19	8.9999
(((	chr6:8079828-8080068(-)$1	1	121	124	8.9999
...	chr11:8707229-8707476(+)$1	1	150	153	8.9999
.))	chr15:44063392-44063642(+)$1	1	187	190	8.9999
((.	chr10:79793523-79793733(+)$1	1	62	65	8.9999
...	chr17:39847726-39847982(+)$1	1	36	39	8.9999
)).	chr11:5289550-5289799(-)$1	1	36	39	8.9999
(((	chr1:20978646-20978924(-)$1	1	21	24	8.9999
(((	chr19:44111533-44111822(-)$1	1	13	16	8.9999
(((	chr20:60963423-60963648(+)$1	1	42	45	8.9999
).)	chr11:812698-812942(+)$1	1	31	34	8.9999
(((	chr18:19209003-19209278(+)$1	1	20	23	8.9999
(((	chr19:42375316-42375547(+)$1	1	9	12	8.9999
.))	chr8:99057650-99057871(-)$1	1	7	10	8.9999

#PSSM
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
C : 0.98	c : 0.01	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_UTR_m2_run1.nuc.txt

#NT
GGCGGCAGGGG	chr19:49122183-49122425(-)$1	242	106	117	24.3636
GUCGGCAGGGG	chr17:26940991-26941300(-)$1	309	137	148	23.4545
ggcgggcgggG	chr3:100428670-100428988(+)$1	318	80	91	18.9090
gcgggcagggg	chr6:43738480-43738702(+)$1	222	51	62	20.2727
GGCUGCAGGGG	chr19:18682642-18682916(+)$1	274	115	126	20.7272
GCUGGGAGGGG	chr12:56554868-56555123(+)$1	255	112	123	19.3636
GUCGGCAGGAG	chr17:46053121-46053361(+)$1	240	78	89	21.1818
GCCAGCAGGGG	chr11:72414344-72414560(-)$1	216	180	191	19.8181
GUUGGGAGGGG	chr7:5569356-5569623(-)$1	267	113	124	19.3636
GGCGGCAGGAG	chr1:59247156-59247431(-)$1	275	121	132	22.0909

#otherMatches

#Struct PSSM
fffffiiiiii	chr1:245026262-245026521(-)$1	259	83	94	20.7272
ffffff]ccce	chr19:49122183-49122425(-)$1	242	106	117	24.3636
fff22ccc:ff	chr17:26940991-26941300(-)$1	309	137	148	23.4545
CCC::::::ff	chr3:100428670-100428988(+)$1	318	80	91	18.9090
[eeeee!!ddd	chr6:43738480-43738702(+)$1	222	51	62	20.2727
$eeeeesssss	chr19:18682642-18682916(+)$1	274	115	126	20.7272
HHHIIIIIIII	chr12:56554868-56555123(+)$1	255	112	123	19.3636
iiiffffffee	chr17:46053121-46053361(+)$1	240	78	89	21.1818
ggggg::eeee	chr11:72414344-72414560(-)$1	216	180	191	19.8181
qqqqqqqcccg	chr7:5569356-5569623(-)$1	267	113	124	19.3636
e!!ccc[hhhh	chr1:59247156-59247431(-)$1	275	121	132	22.0909

#DB
)))))))))))	chr1:245026262-245026521(-)$1	1	83	94	20.7272
)))))).))))	chr19:49122183-49122425(-)$1	1	106	117	24.3636
)))..))).((	chr17:26940991-26941300(-)$1	1	137	148	23.4545
(((......((	chr3:100428670-100428988(+)$1	1	80	91	18.9090
.(((((..(((	chr6:43738480-43738702(+)$1	1	51	62	20.2727
.(((((.....	chr19:18682642-18682916(+)$1	1	115	126	20.7272
)))))))))))	chr12:56554868-56555123(+)$1	1	112	123	19.3636
)))))))))((	chr17:46053121-46053361(+)$1	1	78	89	21.1818
)))))..((((	chr11:72414344-72414560(-)$1	1	180	191	19.8181
.......)))(	chr7:5569356-5569623(-)$1	1	113	124	19.3636
(..(((.((((	chr1:59247156-59247431(-)$1	1	121	132	22.0909

#PSSM
G : 0.81	g : 0.18	
G : 0.36	U : 0.27	C : 0.18	g : 0.09	c : 0.09	
C : 0.63	U : 0.18	c : 0.09	g : 0.09	
G : 0.63	g : 0.18	U : 0.09	A : 0.09	
G : 0.81	g : 0.18	
C : 0.54	G : 0.27	g : 0.09	c : 0.09	
A : 0.81	c : 0.09	a : 0.09	
G : 0.81	g : 0.18	
G : 0.81	g : 0.18	
G : 0.54	A : 0.27	g : 0.18	
G : 0.81	g : 0.18	

#score	230.27272727272734
#seq	11
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_transcript_m2_run2.nuc.txt

#NT
gaggaaga	chr3:82337187-82337520(+)$1	333	173	181	15.8461
GAGCAGGA	chr2:61405877-61406193(+)$1	316	59	67	15.9999
GAGGUGGA	chr3:32301146-32301453(+)$1	307	258	266	16.1538
GAGGAGGA	chr7:26233183-26233415(-)$1	232	131	139	20.3076
GCGGAGGA	chr2:54197728-54198041(-)$1	313	39	47	15.9999
GAGGAGGA	chr8:94746331-94746611(-)$1	280	10	18	20.3076
gaggagga	chr6:31857144-31857449(-)$1	305	106	114	20.3076
GAGAAGGA	chr3:184098397-184098683(+)$1	286	270	278	15.9999
GAGGAGCA	chr20:62665805-62666108(+)$1	303	115	123	16.0769
GAGGAGGA	chr2:220099491-220099734(+)$1	243	159	167	20.3076
GAGGAGGA	chr12:26985932-26986192(-)$1	260	146	154	20.3076
GAGGAGGG	chr10:69834659-69834995(-)$1	336	184	192	16.2307
GAAGAGGA	chr19:959591-959884(+)$1	293	119	127	15.8461
CAGGAGGA	chr16:89588620-89588870(+)$1	250	164	172	15.9230
GAGGAGGC	chr11:65268091-65268299(+)$1	208	61	69	16.3076
gaggagga	chr2:232576587-232576794(+)$1	207	81	89	20.3076
gaggagga	chr20:36130273-36130682(-)$1	409	50	58	20.3076
GUGGAGGA	chr19:1274225-1274478(+)$1	253	41	49	16.2307
GUGGAGGA	chr1:16952351-16952599(-)$1	248	30	38	16.2307
GAGGAGCA	chr17:39975225-39975489(+)$1	264	85	93	16.0769
GAGGAGGC	chr7:158342004-158342274(-)$1	270	230	238	16.3076
GAGGAGGU	chr16:84215714-84216047(-)$1	333	288	296	16.1538
GAGGAUGA	chr18:3456263-3456534(+)$1	271	117	125	15.9230
GAGGAGGC	chr14:23777936-23778229(+)$1	293	124	132	16.3076
GAGGAGGA	chr21:47569911-47570164(-)$1	253	108	116	20.3076
gaggauga	chr10:5025122-5025498(+)$1	376	156	164	15.9230
GAGGAGGA	chr2:70056989-70057298(+)$1	309	248	256	20.3076
GUGGAGGA	chr2:101650027-101650296(-)$1	269	123	131	16.2307
gaggugga	chr8:143389705-143390041(-)$1	336	188	196	16.1538
GUGGAGGA	chr17:57697606-57697877(+)$1	271	53	61	16.2307
GCGGAGGA	chr7:104652981-104653254(-)$1	273	102	110	15.9999
gagaagga	chr7:138194567-138194871(+)$1	304	83	91	15.9999
gaggagga	chr9:131456123-131456396(+)$1	273	108	116	20.3076
GAGGAGGU	chr17:75454936-75455209(+)$1	273	45	53	16.1538
GAUGAGGA	chr17:74287006-74287269(-)$1	263	113	121	15.6923
GAGGAGGA	chr1:150551456-150551804(-)$1	348	299	307	20.3076
gaagagga	chr11:129991537-129991765(+)$1	228	97	105	15.8461
CAGGAGGA	chr17:78555612-78555978(+)$1	366	310	318	15.9230
GAGGAGGC	chr11:65267957-65268173(+)$1	216	195	203	16.3076
GAGGAGGA	chr6:138785214-138785613(-)$1	399	219	227	20.3076
gaggaggg	chr19:943517-943767(+)$1	250	182	190	16.2307
GAGGGGGA	chr12:50898885-50899166(+)$1	281	233	241	15.9999
GAGGAGAA	chr7:97498159-97498438(-)$1	279	221	229	15.9230
GAGGAGGA	chr2:153246565-153246826(+)$1	261	44	52	20.3076
GAGGAGCA	chr12:104697593-104697964(+)$1	371	50	58	16.0769
GUGGAGGA	chr7:7222451-7222779(+)$1	328	86	94	16.2307
GAGCAGGA	chr17:45037097-45037369(+)$1	272	141	149	15.9999
GAGGAGCA	chr16:68265771-68266090(-)$1	319	43	51	16.0769
GAGGGGGA	chr7:23454928-23455206(-)$1	278	92	100	15.9999
GAGAAGGA	chr6:30256528-30256810(-)$1	282	99	107	15.9999
gaggauga	chr1:29505846-29506116(-)$1	270	122	130	15.9230
GAGGAGAA	chr17:46052789-46053038(+)$1	249	103	111	15.9230
gaggcgga	chr12:19592983-19593239(+)$1	256	227	235	15.9230
GAGGAGGA	chr6:30294315-30294597(-)$1	282	25	33	20.3076
GAGGAGGA	chr15:99322812-99323146(+)$1	334	130	138	20.3076
GAGGAGGA	chr7:26233149-26233383(-)$1	234	99	107	20.3076
GAGGUGGA	chr8:144644104-144644394(+)$1	290	77	85	16.1538
CAGGAGGA	chr7:158221810-158222186(-)$1	376	119	127	15.9230
gaggagga	chr20:43053909-43054214(+)$1	305	293	301	20.3076
GAGGAAGA	chr11:2673877-2674108(-)$1	231	107	115	15.8461
CAGGAGGA	chr16:89588715-89588979(+)$1	264	69	77	15.9230
GAGGUGGA	chr17:55609269-55609614(+)$1	345	81	89	16.1538
GAAGAGGA	chr16:24805804-24806066(+)$1	262	131	139	15.8461
gaggaggg	chr19:943567-943851(+)$1	284	132	140	16.2307

#otherMatches

#Struct PSSM
ccc22fff	chr17:45037169-45037463(+)$1	294	69	77	15.9999
a[annnnn	chr3:82337187-82337520(+)$1	333	173	181	15.8461
d]eeeee:	chr2:61405877-61406193(+)$1	316	59	67	15.9999
d[eeeeem	chr3:32301146-32301453(+)$1	307	258	266	16.1538
iii]ccc5	chr7:26233183-26233415(-)$1	232	131	139	20.3076
nnnnna44	chr2:54197728-54198041(-)$1	313	39	47	15.9999
ggggggg[	chr8:94746331-94746611(-)$1	280	10	18	20.3076
33dddddd	chr6:31857144-31857449(-)$1	305	106	114	20.3076
mmmmbb]c	chr3:184098397-184098683(+)$1	286	270	278	15.9999
CCCMMMMJ	chr20:62665805-62666108(+)$1	303	115	123	16.0769
b:::::::	chr2:220099491-220099734(+)$1	243	159	167	20.3076
:::FFFFF	chr12:26985932-26986192(-)$1	260	146	154	20.3076
c22bb]dd	chr10:69834659-69834995(-)$1	336	184	192	16.2307
oooocccc	chr19:959591-959884(+)$1	293	119	127	15.8461
c]bb]bb4	chr16:89588620-89588870(+)$1	250	164	172	15.9230
[a[bb[bb	chr11:65268091-65268299(+)$1	208	61	69	16.3076
gggg[fff	chr2:232576587-232576794(+)$1	207	81	89	20.3076
ccc]ccc:	chr20:36130273-36130682(-)$1	409	50	58	20.3076
ffffff[a	chr19:1274225-1274478(+)$1	253	41	49	16.2307
DDDD{DDD	chr1:16952351-16952599(-)$1	248	30	38	16.2307
cc]dddd:	chr17:39975225-39975489(+)$1	264	85	93	16.0769
A}FFFFFF	chr7:158342004-158342274(-)$1	270	230	238	16.3076
EEEEBB}G	chr16:84215714-84216047(-)$1	333	288	296	16.1538
fffff[dd	chr18:3456263-3456534(+)$1	271	117	125	15.9230
22dddd22	chr14:23777936-23778229(+)$1	293	124	132	16.3076
ggggggga	chr21:47569911-47570164(-)$1	253	108	116	20.3076
dddd####	chr10:5025122-5025498(+)$1	376	156	164	15.9230
ccbbbb]h	chr2:70056989-70057298(+)$1	309	248	256	20.3076
ddddddd:	chr2:101650027-101650296(-)$1	269	123	131	16.2307
C{A{DDDD	chr8:143389705-143390041(-)$1	336	188	196	16.1538
EEEBB{FF	chr17:57697606-57697877(+)$1	271	53	61	16.2307
bb[bb[a[	chr7:104652981-104653254(-)$1	273	102	110	15.9999
eee:::::	chr7:138194567-138194871(+)$1	304	83	91	15.9999
::::::::	chr9:131456123-131456396(+)$1	273	108	116	20.3076
b]a]bb]c	chr17:75454936-75455209(+)$1	273	45	53	16.1538
fff%%%%%	chr17:74287006-74287269(-)$1	263	113	121	15.6923
IIIIIIII	chr1:150551456-150551804(-)$1	348	299	307	20.3076
:::::DDD	chr11:129991537-129991765(+)$1	228	97	105	15.8461
dmmmmddd	chr17:78555612-78555978(+)$1	366	310	318	15.9230
FF}AYYBB	chr11:65267957-65268173(+)$1	216	195	203	16.3076
DDDDDDDD	chr6:138785214-138785613(-)$1	399	219	227	20.3076
::ffffff	chr19:943517-943767(+)$1	250	182	190	16.2307
??JJJJJJ	chr12:50898885-50899166(+)$1	281	233	241	15.9999
DDD}FFFF	chr7:97498159-97498438(-)$1	279	221	229	15.9230
EE::::::	chr2:153246565-153246826(+)$1	261	44	52	20.3076
FFFFFFKK	chr12:104697593-104697964(+)$1	371	50	58	16.0769
FFFCCC{A	chr7:7222451-7222779(+)$1	328	86	94	16.2307
ccc22fff	chr17:45037097-45037369(+)$1	272	141	149	15.9999
ccc!!bb[	chr16:68265771-68266090(-)$1	319	43	51	16.0769
[cccmmmm	chr7:23454928-23455206(-)$1	278	92	100	15.9999
fff:::EE	chr6:30256528-30256810(-)$1	282	99	107	15.9999
nnnnneee	chr1:29505846-29506116(-)$1	270	122	130	15.9230
IIIIIIIB	chr17:46052789-46053038(+)$1	249	103	111	15.9230
g!!cccpp	chr12:19592983-19593239(+)$1	256	227	235	15.9230
DDDKKBB{	chr6:30294315-30294597(-)$1	282	25	33	20.3076
[ccc[ccc	chr15:99322812-99323146(+)$1	334	130	138	20.3076
iii]ccc:	chr7:26233149-26233383(-)$1	234	99	107	20.3076
E{BBffff	chr8:144644104-144644394(+)$1	290	77	85	16.1538
[bb[bboo	chr7:158221810-158222186(-)$1	376	119	127	15.9230
C}BB}BB:	chr20:43053909-43054214(+)$1	305	293	301	20.3076
e4444ddd	chr11:2673877-2674108(-)$1	231	107	115	15.8461
c]bb]bb:	chr16:89588715-89588979(+)$1	264	69	77	15.9230
[a####cc	chr17:55609269-55609614(+)$1	345	81	89	16.1538
d22bb555	chr16:24805804-24806066(+)$1	262	131	139	15.8461
::ffffff	chr19:943567-943851(+)$1	284	132	140	16.2307

#DB
)))..)))	chr17:45037169-45037463(+)$1	1	69	77	15.9999
(.(.....	chr3:82337187-82337520(+)$1	1	173	181	15.8461
).))))).	chr2:61405877-61406193(+)$1	1	59	67	15.9999
(.(((((.	chr3:32301146-32301453(+)$1	1	258	266	16.1538
))).))).	chr7:26233183-26233415(-)$1	1	131	139	20.3076
.....)..	chr2:54197728-54198041(-)$1	1	39	47	15.9999
(((((((.	chr8:94746331-94746611(-)$1	1	10	18	20.3076
..))))))	chr6:31857144-31857449(-)$1	1	106	114	20.3076
....)).)	chr3:184098397-184098683(+)$1	1	270	278	15.9999
(((....(	chr20:62665805-62666108(+)$1	1	115	123	16.0769
).......	chr2:220099491-220099734(+)$1	1	159	167	20.3076
...(((((	chr12:26985932-26986192(-)$1	1	146	154	20.3076
)..)).))	chr10:69834659-69834995(-)$1	1	184	192	16.2307
....)))(	chr19:959591-959884(+)$1	1	119	127	15.8461
).)).)).	chr16:89588620-89588870(+)$1	1	164	172	15.9230
.(.((.((	chr11:65268091-65268299(+)$1	1	61	69	16.3076
((((.(((	chr2:232576587-232576794(+)$1	1	81	89	20.3076
))).))).	chr20:36130273-36130682(-)$1	1	50	58	20.3076
((((((.(	chr19:1274225-1274478(+)$1	1	41	49	16.2307
((((.(((	chr1:16952351-16952599(-)$1	1	30	38	16.2307
)).)))).	chr17:39975225-39975489(+)$1	1	85	93	16.0769
).))))))	chr7:158342004-158342274(-)$1	1	230	238	16.3076
)))))).)	chr16:84215714-84216047(-)$1	1	288	296	16.1538
(((((.((	chr18:3456263-3456534(+)$1	1	117	125	15.9230
..))))..	chr14:23777936-23778229(+)$1	1	124	132	16.3076
)))))))(	chr21:47569911-47570164(-)$1	1	108	116	20.3076
((((....	chr10:5025122-5025498(+)$1	1	156	164	15.9230
)))))).)	chr2:70056989-70057298(+)$1	1	248	256	20.3076
))))))).	chr2:101650027-101650296(-)$1	1	123	131	16.2307
(.(.((((	chr8:143389705-143390041(-)$1	1	188	196	16.1538
(((((.((	chr17:57697606-57697877(+)$1	1	53	61	16.2307
((.((.(.	chr7:104652981-104653254(-)$1	1	102	110	15.9999
))).....	chr7:138194567-138194871(+)$1	1	83	91	15.9999
........	chr9:131456123-131456396(+)$1	1	108	116	20.3076
).).)).)	chr17:75454936-75455209(+)$1	1	45	53	16.1538
(((.....	chr17:74287006-74287269(-)$1	1	113	121	15.6923
))))))))	chr1:150551456-150551804(-)$1	1	299	307	20.3076
.....)))	chr11:129991537-129991765(+)$1	1	97	105	15.8461
(....)))	chr17:78555612-78555978(+)$1	1	310	318	15.9230
)).)..))	chr11:65267957-65268173(+)$1	1	195	203	16.3076
))))))))	chr6:138785214-138785613(-)$1	1	219	227	20.3076
..((((((	chr19:943517-943767(+)$1	1	182	190	16.2307
..))))))	chr12:50898885-50899166(+)$1	1	233	241	15.9999
))).))))	chr7:97498159-97498438(-)$1	1	221	229	15.9230
((......	chr2:153246565-153246826(+)$1	1	44	52	20.3076
((((((..	chr12:104697593-104697964(+)$1	1	50	58	16.0769
((((((.(	chr7:7222451-7222779(+)$1	1	86	94	16.2307
)))..)))	chr17:45037097-45037369(+)$1	1	141	149	15.9999
(((..((.	chr16:68265771-68266090(-)$1	1	43	51	16.0769
.(((....	chr7:23454928-23455206(-)$1	1	92	100	15.9999
)))...))	chr6:30256528-30256810(-)$1	1	99	107	15.9999
.....)))	chr1:29505846-29506116(-)$1	1	122	130	15.9230
))))))))	chr17:46052789-46053038(+)$1	1	103	111	15.9230
(..(((..	chr12:19592983-19593239(+)$1	1	227	235	15.9230
(((..((.	chr6:30294315-30294597(-)$1	1	25	33	20.3076
.(((.(((	chr15:99322812-99323146(+)$1	1	130	138	20.3076
))).))).	chr7:26233149-26233383(-)$1	1	99	107	20.3076
(.((((((	chr8:144644104-144644394(+)$1	1	77	85	16.1538
.((.((..	chr7:158221810-158222186(-)$1	1	119	127	15.9230
).)).)).	chr20:43053909-43054214(+)$1	1	293	301	20.3076
)....)))	chr11:2673877-2674108(-)$1	1	107	115	15.8461
).)).)).	chr16:89588715-89588979(+)$1	1	69	77	15.9230
.(....((	chr17:55609269-55609614(+)$1	1	81	89	16.1538
)..))...	chr16:24805804-24806066(+)$1	1	131	139	15.8461
..((((((	chr19:943567-943851(+)$1	1	132	140	16.2307

#PSSM
G : 0.72	g : 0.21	C : 0.06	
A : 0.67	a : 0.21	U : 0.07	C : 0.03	
G : 0.73	g : 0.20	A : 0.03	U : 0.01	a : 0.01	
G : 0.70	g : 0.20	C : 0.04	A : 0.03	a : 0.01	
A : 0.70	a : 0.18	U : 0.04	G : 0.03	u : 0.01	c : 0.01	
G : 0.75	g : 0.16	u : 0.03	a : 0.01	U : 0.01	A : 0.01	
G : 0.69	g : 0.21	C : 0.06	A : 0.03	
A : 0.67	a : 0.18	C : 0.06	U : 0.03	g : 0.03	G : 0.01	

#score	1115.6923076923072
#seq	65
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_UTR_m2_run1.nuc.txt

#NT
UUUCUCCUUUU	chr19:48958124-48958415(+)$1	291	80	91	17.1346
AUUUUGCUUCU	chr2:85547407-85547700(-)$1	293	191	202	17.7115
CUUUUCUUUUU	chr19:45912059-45912320(-)$1	261	92	103	16.2692
UUUUUCCUACU	chr12:49330365-49330666(-)$1	301	84	95	19.6346
AUUUUCCUUCA	chr17:26937612-26937937(-)$1	325	208	219	17.8076
UAUUUCUUUCU	chr6:30692312-30692542(+)$1	230	102	113	17.8076
UGUUCCCUUCU	chr19:54645284-54645558(+)$1	274	64	75	15.9807
cuuuuccuuca	chrX:133930304-133930683(-)$1	379	173	184	17.7115
uuuuuccuccu	chr11:62566465-62566792(-)$1	327	226	237	19.7307
GUUUUCUUUAU	chr19:54377803-54378081(+)$1	278	4	15	15.6923
UUUUUCCUUCC	chr7:143002961-143003256(+)$1	295	10	21	19.8269
UUAUUUCUUCU	chr10:102120793-102121049(+)$1	256	86	97	15.5961
ugucuccuucu	chr7:73108610-73108872(+)$1	262	34	45	16.6538
UUUUUUCUUCU	chr19:45911700-45911969(-)$1	269	92	103	20.2115
AUUUUCUUUCU	chr7:107564283-107564619(+)$1	336	234	245	19.5384
UUCUUCCUGCU	chr2:71215001-71215279(-)$1	278	67	78	15.2115
UAUUUCUUUCU	chr6:30692288-30692512(+)$1	224	126	137	17.8076
GUUUUCUUUCU	chr2:85546815-85547084(-)$1	269	204	215	19.3461
AUUUUCCUUCA	chr17:26937529-26937805(-)$1	276	76	87	17.8076
uuugucuuucu	chr6:27223462-27223740(+)$1	278	86	97	17.8076
UUUUUUGUUCU	chr6:43028655-43029004(+)$1	349	100	111	16.7500
ACUUUCUUUCU	chr6:27223663-27223965(+)$1	302	102	113	15.5961
UUCUUCCUUCU	chr3:52083575-52083866(-)$1	291	226	237	19.5384
AUUUUCCUUCU	chr7:73609770-73610003(+)$1	233	106	117	21.8461
GGUUUCCUUAU	chr3:33132486-33132758(-)$1	272	62	73	14.3461
uuucugcuucu	chr2:26483666-26483960(+)$1	294	20	31	16.1730
UUUUUCCGUUU	chr6:7282258-7282601(-)$1	343	103	114	16.4615
UUUGCCCUUCU	chr11:203969-204259(-)$1	290	103	114	15.6923
UUUUUCUGUCU	chr20:35090762-35091075(+)$1	313	159	170	17.3269
CUUUUCCUUCU	chr9:134373141-134373396(+)$1	255	102	113	21.7500
UUUCUCCUUCC	chr2:85546950-85547221(-)$1	271	52	63	16.0769
UUUUUCCUUUU	chr8:103876074-103876364(-)$1	290	2	13	20.8846
uuugucuuucu	chr6:27223540-27223815(+)$1	275	8	19	17.8076
ugucuccuucu	chr7:73108558-73108810(+)$1	252	86	97	16.6538
cuuuuccuucu	chr5:112227519-112227848(-)$1	329	221	232	21.7500
UUUUUCUUUCU	chr19:45912364-45912598(-)$1	234	199	210	21.7499
CUUUUCAUUCU	chr9:116169955-116170306(-)$1	351	71	82	18.2884
cuuuucucucu	chr5:177655075-177655387(-)$1	312	165	176	15.0192
AUUUUCCUUCU	chr1:248040121-248040398(+)$1	277	109	120	21.8461
UUUUUUCUUCA	chr4:26434635-26434979(+)$1	344	81	92	16.1730
UUUUGCCCUCU	chr12:4412479-4412739(+)$1	260	7	18	15.2115
GCUUUCCUuuu	chr11:73685737-73686027(-)$1	290	29	40	14.5384
uuuuuucuuuu	chr2:176791709-176791986(-)$1	277	84	95	17.0384
uuuuuccuccu	chr11:62566390-62566665(-)$1	275	99	110	19.7307
GUUUGCCUUCU	chr17:61666963-61667258(+)$1	295	196	207	17.2307
UUUUUCCUUUU	chr8:103876233-103876462(-)$1	229	100	111	20.8846
GUUUUCUUUAU	chr19:54377747-54377977(+)$1	230	60	71	15.6923
AUUUUCCUUCU	chr7:73609803-73610040(+)$1	237	73	84	21.8461
cuuuuccuucu	chr6:27223805-27224130(+)$1	325	151	162	21.7500
uguuuccugcu	chr19:7710773-7711088(+)$1	315	41	52	16.0769
UUUUUCCUUCU	chr1:46744258-46744542(-)$1	284	125	136	24.0576

#otherMatches

#Struct PSSM
yyyyyyyyyyy	chr8:103876164-103876432(-)$1	268	70	81	20.8846
^^^^^^^^^^^	chr19:48958124-48958415(+)$1	291	80	91	17.1346
pppppccc:::	chr2:85547407-85547700(-)$1	293	191	202	17.7115
iii^^^^^^^^	chr19:45912059-45912320(-)$1	261	92	103	16.2692
:::::DDDD{H	chr12:49330365-49330666(-)$1	301	84	95	19.6346
uuuuuuuuuuc	chr17:26937612-26937937(-)$1	325	208	219	17.8076
eeee$$$$$dd	chr6:30692312-30692542(+)$1	230	102	113	17.8076
[a[ccca[ccc	chr19:54645284-54645558(+)$1	274	64	75	15.9807
:::::::::::	chrX:133930304-133930683(-)$1	379	173	184	17.7115
FFFF:::::::	chr11:62566465-62566792(-)$1	327	226	237	19.7307
dd[ddddmmmm	chr19:54377803-54378081(+)$1	278	4	15	15.6923
:::::::::::	chr7:143002961-143003256(+)$1	295	10	21	19.8269
:::::::::::	chr10:102120793-102121049(+)$1	256	86	97	15.5961
ccc::::::::	chr7:73108610-73108872(+)$1	262	34	45	16.6538
:::::::::::	chr19:45911700-45911969(-)$1	269	92	103	20.2115
dd!!hhhhhhh	chr7:107564283-107564619(+)$1	336	234	245	19.5384
:::HHHHHHHH	chr2:71215001-71215279(-)$1	278	67	78	15.2115
eeee$$$$$dd	chr6:30692288-30692512(+)$1	224	126	137	17.8076
dpppppppddd	chr2:85546815-85547084(-)$1	269	204	215	19.3461
::::::DDDDF	chr17:26937529-26937805(-)$1	276	76	87	17.8076
:::::::::::	chr6:27223462-27223740(+)$1	278	86	97	17.8076
cc+++++++++	chr6:43028655-43029004(+)$1	349	100	111	16.7500
cc:::::::::	chr6:27223663-27223965(+)$1	302	102	113	15.5961
nnnnncccJJJ	chr3:52083575-52083866(-)$1	291	226	237	19.5384
JJ:::::::::	chr7:73609770-73610003(+)$1	233	106	117	21.8461
ffffff333dd	chr3:33132486-33132758(-)$1	272	62	73	14.3461
F{CCC::::::	chr2:26483666-26483960(+)$1	294	20	31	16.1730
ffff!!annnn	chr6:7282258-7282601(-)$1	343	103	114	16.4615
33ccc::::::	chr11:203969-204259(-)$1	290	103	114	15.6923
:::::::::::	chr20:35090762-35091075(+)$1	313	159	170	17.3269
cyyyyyyyyyy	chr9:134373141-134373396(+)$1	255	102	113	21.7500
^^^^^ccc333	chr2:85546950-85547221(-)$1	271	52	63	16.0769
::::::::FFF	chr8:103876074-103876364(-)$1	290	2	13	20.8846
:::::::::::	chr6:27223540-27223815(+)$1	275	8	19	17.8076
:::::::::::	chr7:73108558-73108810(+)$1	252	86	97	16.6538
:::::::cccq	chr5:112227519-112227848(-)$1	329	221	232	21.7500
:::::::::::	chr19:45912364-45912598(-)$1	234	199	210	21.7499
C::::eeeee[	chr9:116169955-116170306(-)$1	351	71	82	18.2884
ssssssssssb	chr5:177655075-177655387(-)$1	312	165	176	15.0192
c::::::::::	chr1:248040121-248040398(+)$1	277	109	120	21.8461
:::::::::::	chr4:26434635-26434979(+)$1	344	81	92	16.1730
$$$$bbeeeee	chr12:4412479-4412739(+)$1	260	7	18	15.2115
:::::::::::	chr11:73685737-73686027(-)$1	290	29	40	14.5384
PPPPPHHHHHH	chr2:176791709-176791986(-)$1	277	84	95	17.0384
:::::::::::	chr11:62566390-62566665(-)$1	275	99	110	19.7307
E@@@@@@@@@@	chr17:61666963-61667258(+)$1	295	196	207	17.2307
yyyyyyyyyyy	chr8:103876233-103876462(-)$1	229	100	111	20.8846
ggggg::::::	chr19:54377747-54377977(+)$1	230	60	71	15.6923
JJ:::::::::	chr7:73609803-73610040(+)$1	237	73	84	21.8461
:::::::::::	chr6:27223805-27224130(+)$1	325	151	162	21.7500
:::::::::::	chr19:7710773-7711088(+)$1	315	41	52	16.0769
::::::DDDDY	chr1:46744258-46744542(-)$1	284	125	136	24.0576

#DB
...........	chr8:103876164-103876432(-)$1	1	70	81	20.8846
...........	chr19:48958124-48958415(+)$1	1	80	91	17.1346
.....)))...	chr2:85547407-85547700(-)$1	1	191	202	17.7115
(((........	chr19:45912059-45912320(-)$1	1	92	103	16.2692
.....((((.(	chr12:49330365-49330666(-)$1	1	84	95	19.6346
..........)	chr17:26937612-26937937(-)$1	1	208	219	17.8076
((((.....((	chr6:30692312-30692542(+)$1	1	102	113	17.8076
.(.((((.(((	chr19:54645284-54645558(+)$1	1	64	75	15.9807
...........	chrX:133930304-133930683(-)$1	1	173	184	17.7115
)))).......	chr11:62566465-62566792(-)$1	1	226	237	19.7307
((.((((....	chr19:54377803-54378081(+)$1	1	4	15	15.6923
...........	chr7:143002961-143003256(+)$1	1	10	21	19.8269
...........	chr10:102120793-102121049(+)$1	1	86	97	15.5961
)))........	chr7:73108610-73108872(+)$1	1	34	45	16.6538
...........	chr19:45911700-45911969(-)$1	1	92	103	20.2115
((..(((((((	chr7:107564283-107564619(+)$1	1	234	245	19.5384
...((((((((	chr2:71215001-71215279(-)$1	1	67	78	15.2115
((((.....((	chr6:30692288-30692512(+)$1	1	126	137	17.8076
(.......)))	chr2:85546815-85547084(-)$1	1	204	215	19.3461
......(((((	chr17:26937529-26937805(-)$1	1	76	87	17.8076
...........	chr6:27223462-27223740(+)$1	1	86	97	17.8076
((.........	chr6:43028655-43029004(+)$1	1	100	111	16.7500
)).........	chr6:27223663-27223965(+)$1	1	102	113	15.5961
.....))))))	chr3:52083575-52083866(-)$1	1	226	237	19.5384
((.........	chr7:73609770-73610003(+)$1	1	106	117	21.8461
))))))...))	chr3:33132486-33132758(-)$1	1	62	73	14.3461
(.(((......	chr2:26483666-26483960(+)$1	1	20	31	16.1730
((((..(....	chr6:7282258-7282601(-)$1	1	103	114	16.4615
..)))......	chr11:203969-204259(-)$1	1	103	114	15.6923
...........	chr20:35090762-35091075(+)$1	1	159	170	17.3269
(..........	chr9:134373141-134373396(+)$1	1	102	113	21.7500
.....)))...	chr2:85546950-85547221(-)$1	1	52	63	16.0769
........(((	chr8:103876074-103876364(-)$1	1	2	13	20.8846
...........	chr6:27223540-27223815(+)$1	1	8	19	17.8076
...........	chr7:73108558-73108810(+)$1	1	86	97	16.6538
.......(((.	chr5:112227519-112227848(-)$1	1	221	232	21.7500
...........	chr19:45912364-45912598(-)$1	1	199	210	21.7499
(....(((((.	chr9:116169955-116170306(-)$1	1	71	82	18.2884
..........)	chr5:177655075-177655387(-)$1	1	165	176	15.0192
)..........	chr1:248040121-248040398(+)$1	1	109	120	21.8461
...........	chr4:26434635-26434979(+)$1	1	81	92	16.1730
....(((((((	chr12:4412479-4412739(+)$1	1	7	18	15.2115
...........	chr11:73685737-73686027(-)$1	1	29	40	14.5384
.....((((((	chr2:176791709-176791986(-)$1	1	84	95	17.0384
...........	chr11:62566390-62566665(-)$1	1	99	110	19.7307
)..........	chr17:61666963-61667258(+)$1	1	196	207	17.2307
...........	chr8:103876233-103876462(-)$1	1	100	111	20.8846
)))))......	chr19:54377747-54377977(+)$1	1	60	71	15.6923
((.........	chr7:73609803-73610040(+)$1	1	73	84	21.8461
...........	chr6:27223805-27224130(+)$1	1	151	162	21.7500
...........	chr19:7710773-7711088(+)$1	1	41	52	16.0769
......)))).	chr1:46744258-46744542(-)$1	1	125	136	24.0576

#PSSM
U : 0.42	u : 0.17	A : 0.15	G : 0.11	c : 0.07	C : 0.05	
U : 0.63	u : 0.19	g : 0.05	A : 0.03	G : 0.03	C : 0.03	
U : 0.69	u : 0.24	C : 0.03	A : 0.01	
U : 0.69	u : 0.15	c : 0.05	C : 0.03	g : 0.03	G : 0.01	
U : 0.67	u : 0.24	C : 0.03	G : 0.03	
C : 0.65	c : 0.21	U : 0.07	G : 0.01	g : 0.01	u : 0.01	
C : 0.51	U : 0.19	c : 0.19	u : 0.05	G : 0.01	A : 0.01	
U : 0.69	u : 0.23	G : 0.03	c : 0.01	C : 0.01	
U : 0.69	u : 0.21	c : 0.03	A : 0.01	G : 0.01	g : 0.01	
C : 0.55	c : 0.23	U : 0.11	A : 0.05	u : 0.03	
U : 0.63	u : 0.24	A : 0.05	C : 0.03	a : 0.01	

#score	941.9615384615387
#seq	52
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_CDS_m2_run2.nuc.txt

#NT
CUC	chrM:10870-11072(+)$1	202	60	63	8.9999
CUC	chrM:7627-7831(+)$1	204	40	43	8.9999
CUC	chrM:9247-9451(+)$1	204	23	26	8.9999
CUC	chr2:102477166-102477393(+)$1	227	109	112	8.9999
CUC	chrM:8598-8801(+)$1	203	11	14	8.9999
CUC	chr22:40676962-40677329(+)$1	367	55	58	8.9999
CUC	chrM:13712-13917(+)$1	205	23	26	8.9999
CUC	chr5:14489001-14489273(+)$1	272	22	25	8.9999
CUC	chr1:22416289-22416587(+)$1	298	57	60	8.9999
CUC	chr12:56717544-56717877(-)$1	333	7	10	8.9999
CUC	chr19:39329553-39329833(-)$1	280	6	9	8.9999
CUC	chr5:65364522-65364852(+)$1	330	78	81	8.9999
CUC	chrM:10856-11058(+)$1	202	74	77	8.9999
CUC	chr12:57114657-57114950(-)$1	293	7	10	8.9999
CUC	chr19:4423152-4423441(+)$1	289	172	175	8.9999
CUC	chr2:71626540-71626827(+)$1	287	169	172	8.9999
CUC	chrM:13638-13840(+)$1	202	2	5	8.9999
CUC	chr2:153499873-153500121(+)$1	248	19	22	8.9999
CUC	chr14:23566808-23567126(+)$1	318	18	21	8.9999
CUC	chrX:41204246-41204537(+)$1	291	139	142	8.9999
cuc	chr1:62970341-62970686(-)$1	345	76	79	8.9999
CUC	chr2:122202380-122202696(-)$1	316	5	8	8.9999
CUC	chrX:118759168-118759462(-)$1	294	14	17	8.9999
CUC	chr3:56655440-56655703(-)$1	263	76	79	8.9999
CUC	chrM:8611-8813(+)$1	202	14	17	8.9999
CUC	chrM:9251-9468(+)$1	217	19	22	8.9999
CUC	chrM:8601-8805(+)$1	204	8	11	8.9999
cuc	chr13:76101855-76102111(-)$1	256	56	59	8.9999
CUC	chr6:142704829-142705102(+)$1	273	28	31	8.9999
CUC	chrM:8595-8798(+)$1	203	14	17	8.9999
CUC	chrM:13573-13776(+)$1	203	0	3	8.9999
CUC	chr6:71195733-71195986(+)$1	253	153	156	8.9999
CUC	chr2:63215014-63215283(+)$1	269	153	156	8.9999
CUC	chr9:95155235-95155593(+)$1	358	342	345	8.9999
cuc	chr1:45270746-45271052(+)$1	306	22	25	8.9999
CUC	chr9:19336651-19336913(+)$1	262	32	35	8.9999
CUC	chrM:13672-13879(+)$1	207	63	66	8.9999
CUC	chrM:13613-13834(+)$1	221	8	11	8.9999
CUC	chrM:10892-11114(+)$1	222	38	41	8.9999
CUC	chr19:7706680-7707032(+)$1	352	129	132	8.9999
CUC	chr10:860306-860607(-)$1	301	5	8	8.9999
CUC	chr3:196803403-196803682(-)$1	279	109	112	8.9999
CUC	chr1:63010527-63010797(-)$1	270	98	101	8.9999
CUC	chrM:12301-12505(+)$1	204	21	24	8.9999
CUC	chrM:13687-13896(+)$1	209	48	51	8.9999
CUC	chrM:13634-13838(+)$1	204	6	9	8.9999
CUC	chrM:8617-8837(+)$1	220	8	11	8.9999
CUC	chrM:13640-13847(+)$1	207	0	3	8.9999
CUC	chr12:53868789-53869050(+)$1	261	1	4	8.9999
CUC	chrM:13679-13887(+)$1	208	56	59	8.9999
CUC	chr1:154131378-154131683(-)$1	305	54	57	8.9999
CUC	chrM:10979-11217(+)$1	238	3	6	8.9999
cuc	chr6:30611193-30611427(+)$1	234	13	16	8.9999
CUC	chrM:12305-12511(+)$1	206	17	20	8.9999
CUC	chr2:186655989-186656234(-)$1	245	93	96	8.9999
CUC	chr14:100604074-100604392(+)$1	318	55	58	8.9999
CUC	chr12:53511992-53512237(+)$1	245	9	12	8.9999
CUC	chr1:109816500-109816803(+)$1	303	76	79	8.9999
CUC	chrM:13577-13781(+)$1	204	7	10	8.9999
cuc	chr19:49481290-49481656(-)$1	366	24	27	8.9999
CUC	chr16:24801228-24801483(+)$1	255	62	65	8.9999
CUC	chr1:82452483-82452756(+)$1	273	66	69	8.9999
cuc	chr7:64452288-64452559(-)$1	271	117	120	8.9999
CUC	chr17:48504120-48504442(+)$1	322	31	34	8.9999
CUC	chr10:115674496-115674857(+)$1	361	192	195	8.9999
CUC	chr2:63214989-63215214(+)$1	225	178	181	8.9999
CUC	chrM:13566-13773(+)$1	207	5	8	8.9999
CUC	chrM:8567-8773(+)$1	206	42	45	8.9999
CUC	chr19:2228098-2228346(+)$1	248	10	13	8.9999
CUC	chrM:12288-12501(+)$1	213	34	37	8.9999
CUC	chrM:10967-11174(+)$1	207	6	9	8.9999
CUC	chrM:10873-11082(+)$1	209	57	60	8.9999
CUC	chrM:10803-11036(+)$1	233	127	130	8.9999
CUC	chrM:13595-13800(+)$1	205	12	15	8.9999
CUC	chr19:57903977-57904315(+)$1	338	196	199	8.9999
CUC	chrM:8578-8781(+)$1	203	31	34	8.9999
CUC	chr1:28793098-28793361(+)$1	263	24	27	8.9999
CUC	chrM:13736-13951(+)$1	215	50	53	8.9999
CUC	chr3:33870234-33870469(+)$1	235	80	83	8.9999
cuc	chr8:42855251-42855526(+)$1	275	5	8	8.9999
CUC	chr2:153499794-153500073(+)$1	279	98	101	8.9999
CUC	chrM:13610-13813(+)$1	203	11	14	8.9999
CUC	chrM:13717-13923(+)$1	206	18	21	8.9999
CUC	chr17:4796372-4796719(+)$1	347	20	23	8.9999
CUC	chr7:158545387-158545701(-)$1	314	294	297	8.9999
CUC	chr2:63214936-63215172(+)$1	236	231	234	8.9999
CUC	chrM:8613-8817(+)$1	204	12	15	8.9999
CUC	chr1:154141753-154142036(-)$1	283	105	108	8.9999
CUC	chrM:8605-8809(+)$1	204	4	7	8.9999
CUC	chr2:61244842-61245187(-)$1	345	58	61	8.9999
CUC	chrM:12311-12526(+)$1	215	11	14	8.9999
CUC	chr16:3334915-3335161(+)$1	246	52	55	8.9999
CUC	chrM:13723-13927(+)$1	204	12	15	8.9999
CUC	chrM:13647-13849(+)$1	202	88	91	8.9999
CUC	chr11:57583262-57583522(+)$1	260	5	8	8.9999
CUC	chrM:10863-11066(+)$1	203	67	70	8.9999

#otherMatches

#Struct PSSM
5hh	chr10:24834765-24835019(+)$1	254	40	43	8.9999
:::	chrM:10870-11072(+)$1	202	60	63	8.9999
:::	chrM:7627-7831(+)$1	204	40	43	8.9999
:::	chrM:9247-9451(+)$1	204	23	26	8.9999
f22	chr2:102477166-102477393(+)$1	227	109	112	8.9999
:::	chrM:8598-8801(+)$1	203	11	14	8.9999
FFB	chr22:40676962-40677329(+)$1	367	55	58	8.9999
^^^	chrM:13712-13917(+)$1	205	23	26	8.9999
dmm	chr5:14489001-14489273(+)$1	272	22	25	8.9999
:::	chr1:22416289-22416587(+)$1	298	57	60	8.9999
:::	chr12:56717544-56717877(-)$1	333	7	10	8.9999
iii	chr19:39329553-39329833(-)$1	280	6	9	8.9999
err	chr5:65364522-65364852(+)$1	330	78	81	8.9999
:::	chrM:10856-11058(+)$1	202	74	77	8.9999
dd%	chr12:57114657-57114950(-)$1	293	7	10	8.9999
ddd	chr19:4423152-4423441(+)$1	289	172	175	8.9999
cce	chr2:71626540-71626827(+)$1	287	169	172	8.9999
:::	chrM:13638-13840(+)$1	202	2	5	8.9999
:ee	chr2:153499873-153500121(+)$1	248	19	22	8.9999
III	chr14:23566808-23567126(+)$1	318	18	21	8.9999
b""	chrX:41204246-41204537(+)$1	291	139	142	8.9999
FFF	chr1:62970341-62970686(-)$1	345	76	79	8.9999
KKF	chr2:122202380-122202696(-)$1	316	5	8	8.9999
KKB	chrX:118759168-118759462(-)$1	294	14	17	8.9999
:::	chr3:56655440-56655703(-)$1	263	76	79	8.9999
:::	chrM:8611-8813(+)$1	202	14	17	8.9999
ppp	chrM:9251-9468(+)$1	217	19	22	8.9999
:::	chrM:8601-8805(+)$1	204	8	11	8.9999
KJJ	chr13:76101855-76102111(-)$1	256	56	59	8.9999
GGK	chr6:142704829-142705102(+)$1	273	28	31	8.9999
:::	chrM:8595-8798(+)$1	203	14	17	8.9999
:::	chrM:13573-13776(+)$1	203	0	3	8.9999
h22	chr6:71195733-71195986(+)$1	253	153	156	8.9999
ddd	chr2:63215014-63215283(+)$1	269	153	156	8.9999
:::	chr9:95155235-95155593(+)$1	358	342	345	8.9999
nnn	chr1:45270746-45271052(+)$1	306	22	25	8.9999
d22	chr9:19336651-19336913(+)$1	262	32	35	8.9999
^^^	chrM:13672-13879(+)$1	207	63	66	8.9999
:::	chrM:13613-13834(+)$1	221	8	11	8.9999
:::	chrM:10892-11114(+)$1	222	38	41	8.9999
FFF	chr19:7706680-7707032(+)$1	352	129	132	8.9999
CC{	chr10:860306-860607(-)$1	301	5	8	8.9999
YYC	chr3:196803403-196803682(-)$1	279	109	112	8.9999
b[c	chr1:63010527-63010797(-)$1	270	98	101	8.9999
:::	chrM:12301-12505(+)$1	204	21	24	8.9999
^^^	chrM:13687-13896(+)$1	209	48	51	8.9999
:::	chrM:13634-13838(+)$1	204	6	9	8.9999
:::	chrM:8617-8837(+)$1	220	8	11	8.9999
:::	chrM:13640-13847(+)$1	207	0	3	8.9999
:::	chr12:53868789-53869050(+)$1	261	1	4	8.9999
^^^	chrM:13679-13887(+)$1	208	56	59	8.9999
ncc	chr1:154131378-154131683(-)$1	305	54	57	8.9999
:::	chrM:10979-11217(+)$1	238	3	6	8.9999
:::	chr6:30611193-30611427(+)$1	234	13	16	8.9999
ppe	chrM:12305-12511(+)$1	206	17	20	8.9999
===	chr2:186655989-186656234(-)$1	245	93	96	8.9999
EEE	chr14:100604074-100604392(+)$1	318	55	58	8.9999
cnn	chr12:53511992-53512237(+)$1	245	9	12	8.9999
>>>	chr1:109816500-109816803(+)$1	303	76	79	8.9999
:::	chrM:13577-13781(+)$1	204	7	10	8.9999
cmm	chr19:49481290-49481656(-)$1	366	24	27	8.9999
xxx	chr16:24801228-24801483(+)$1	255	62	65	8.9999
ee]	chr1:82452483-82452756(+)$1	273	66	69	8.9999
DD{	chr7:64452288-64452559(-)$1	271	117	120	8.9999
cnn	chr17:48504120-48504442(+)$1	322	31	34	8.9999
fff	chr10:115674496-115674857(+)$1	361	192	195	8.9999
ddd	chr2:63214989-63215214(+)$1	225	178	181	8.9999
:::	chrM:13566-13773(+)$1	207	5	8	8.9999
^^^	chrM:8567-8773(+)$1	206	42	45	8.9999
:::	chr19:2228098-2228346(+)$1	248	10	13	8.9999
44d	chrM:12288-12501(+)$1	213	34	37	8.9999
yyy	chrM:10967-11174(+)$1	207	6	9	8.9999
:::	chrM:10873-11082(+)$1	209	57	60	8.9999
:::	chrM:10803-11036(+)$1	233	127	130	8.9999
bbf	chrM:13595-13800(+)$1	205	12	15	8.9999
fff	chr19:57903977-57904315(+)$1	338	196	199	8.9999
^^^	chrM:8578-8781(+)$1	203	31	34	8.9999
vvv	chr1:28793098-28793361(+)$1	263	24	27	8.9999
:::	chrM:13736-13951(+)$1	215	50	53	8.9999
FF:	chr3:33870234-33870469(+)$1	235	80	83	8.9999
::C	chr8:42855251-42855526(+)$1	275	5	8	8.9999
:ee	chr2:153499794-153500073(+)$1	279	98	101	8.9999
ee#	chrM:13610-13813(+)$1	203	11	14	8.9999
^^^	chrM:13717-13923(+)$1	206	18	21	8.9999
gcc	chr17:4796372-4796719(+)$1	347	20	23	8.9999
ggg	chr7:158545387-158545701(-)$1	314	294	297	8.9999
ddd	chr2:63214936-63215172(+)$1	236	231	234	8.9999
:::	chrM:8613-8817(+)$1	204	12	15	8.9999
HHH	chr1:154141753-154142036(-)$1	283	105	108	8.9999
:::	chrM:8605-8809(+)$1	204	4	7	8.9999
cc2	chr2:61244842-61245187(-)$1	345	58	61	8.9999
ppe	chrM:12311-12526(+)$1	215	11	14	8.9999
""b	chr16:3334915-3335161(+)$1	246	52	55	8.9999
^^^	chrM:13723-13927(+)$1	204	12	15	8.9999
^^^	chrM:13647-13849(+)$1	202	88	91	8.9999
FF:	chr11:57583262-57583522(+)$1	260	5	8	8.9999
:::	chrM:10863-11066(+)$1	203	67	70	8.9999

#DB
.))	chr10:24834765-24835019(+)$1	1	40	43	8.9999
...	chrM:10870-11072(+)$1	1	60	63	8.9999
...	chrM:7627-7831(+)$1	1	40	43	8.9999
...	chrM:9247-9451(+)$1	1	23	26	8.9999
)..	chr2:102477166-102477393(+)$1	1	109	112	8.9999
...	chrM:8598-8801(+)$1	1	11	14	8.9999
))(	chr22:40676962-40677329(+)$1	1	55	58	8.9999
...	chrM:13712-13917(+)$1	1	23	26	8.9999
(..	chr5:14489001-14489273(+)$1	1	22	25	8.9999
...	chr1:22416289-22416587(+)$1	1	57	60	8.9999
...	chr12:56717544-56717877(-)$1	1	7	10	8.9999
(((	chr19:39329553-39329833(-)$1	1	6	9	8.9999
(..	chr5:65364522-65364852(+)$1	1	78	81	8.9999
...	chrM:10856-11058(+)$1	1	74	77	8.9999
((.	chr12:57114657-57114950(-)$1	1	7	10	8.9999
(((	chr19:4423152-4423441(+)$1	1	172	175	8.9999
)))	chr2:71626540-71626827(+)$1	1	169	172	8.9999
...	chrM:13638-13840(+)$1	1	2	5	8.9999
.((	chr2:153499873-153500121(+)$1	1	19	22	8.9999
(((	chr14:23566808-23567126(+)$1	1	18	21	8.9999
(..	chrX:41204246-41204537(+)$1	1	139	142	8.9999
(((	chr1:62970341-62970686(-)$1	1	76	79	8.9999
..(	chr2:122202380-122202696(-)$1	1	5	8	8.9999
..(	chrX:118759168-118759462(-)$1	1	14	17	8.9999
...	chr3:56655440-56655703(-)$1	1	76	79	8.9999
...	chrM:8611-8813(+)$1	1	14	17	8.9999
...	chrM:9251-9468(+)$1	1	19	22	8.9999
...	chrM:8601-8805(+)$1	1	8	11	8.9999
.((	chr13:76101855-76102111(-)$1	1	56	59	8.9999
((.	chr6:142704829-142705102(+)$1	1	28	31	8.9999
...	chrM:8595-8798(+)$1	1	14	17	8.9999
...	chrM:13573-13776(+)$1	1	0	3	8.9999
)..	chr6:71195733-71195986(+)$1	1	153	156	8.9999
)))	chr2:63215014-63215283(+)$1	1	153	156	8.9999
...	chr9:95155235-95155593(+)$1	1	342	345	8.9999
...	chr1:45270746-45271052(+)$1	1	22	25	8.9999
)..	chr9:19336651-19336913(+)$1	1	32	35	8.9999
...	chrM:13672-13879(+)$1	1	63	66	8.9999
...	chrM:13613-13834(+)$1	1	8	11	8.9999
...	chrM:10892-11114(+)$1	1	38	41	8.9999
(((	chr19:7706680-7707032(+)$1	1	129	132	8.9999
((.	chr10:860306-860607(-)$1	1	5	8	8.9999
..)	chr3:196803403-196803682(-)$1	1	109	112	8.9999
(.(	chr1:63010527-63010797(-)$1	1	98	101	8.9999
...	chrM:12301-12505(+)$1	1	21	24	8.9999
...	chrM:13687-13896(+)$1	1	48	51	8.9999
...	chrM:13634-13838(+)$1	1	6	9	8.9999
...	chrM:8617-8837(+)$1	1	8	11	8.9999
...	chrM:13640-13847(+)$1	1	0	3	8.9999
...	chr12:53868789-53869050(+)$1	1	1	4	8.9999
...	chrM:13679-13887(+)$1	1	56	59	8.9999
.))	chr1:154131378-154131683(-)$1	1	54	57	8.9999
...	chrM:10979-11217(+)$1	1	3	6	8.9999
...	chr6:30611193-30611427(+)$1	1	13	16	8.9999
..)	chrM:12305-12511(+)$1	1	17	20	8.9999
(((	chr2:186655989-186656234(-)$1	1	93	96	8.9999
(((	chr14:100604074-100604392(+)$1	1	55	58	8.9999
(..	chr12:53511992-53512237(+)$1	1	9	12	8.9999
...	chr1:109816500-109816803(+)$1	1	76	79	8.9999
...	chrM:13577-13781(+)$1	1	7	10	8.9999
(..	chr19:49481290-49481656(-)$1	1	24	27	8.9999
...	chr16:24801228-24801483(+)$1	1	62	65	8.9999
)).	chr1:82452483-82452756(+)$1	1	66	69	8.9999
((.	chr7:64452288-64452559(-)$1	1	117	120	8.9999
(..	chr17:48504120-48504442(+)$1	1	31	34	8.9999
(((	chr10:115674496-115674857(+)$1	1	192	195	8.9999
)))	chr2:63214989-63215214(+)$1	1	178	181	8.9999
...	chrM:13566-13773(+)$1	1	5	8	8.9999
...	chrM:8567-8773(+)$1	1	42	45	8.9999
...	chr19:2228098-2228346(+)$1	1	10	13	8.9999
..)	chrM:12288-12501(+)$1	1	34	37	8.9999
...	chrM:10967-11174(+)$1	1	6	9	8.9999
...	chrM:10873-11082(+)$1	1	57	60	8.9999
...	chrM:10803-11036(+)$1	1	127	130	8.9999
(((	chrM:13595-13800(+)$1	1	12	15	8.9999
(((	chr19:57903977-57904315(+)$1	1	196	199	8.9999
...	chrM:8578-8781(+)$1	1	31	34	8.9999
...	chr1:28793098-28793361(+)$1	1	24	27	8.9999
...	chrM:13736-13951(+)$1	1	50	53	8.9999
((.	chr3:33870234-33870469(+)$1	1	80	83	8.9999
..(	chr8:42855251-42855526(+)$1	1	5	8	8.9999
.((	chr2:153499794-153500073(+)$1	1	98	101	8.9999
((.	chrM:13610-13813(+)$1	1	11	14	8.9999
...	chrM:13717-13923(+)$1	1	18	21	8.9999
)))	chr17:4796372-4796719(+)$1	1	20	23	8.9999
)))	chr7:158545387-158545701(-)$1	1	294	297	8.9999
)))	chr2:63214936-63215172(+)$1	1	231	234	8.9999
...	chrM:8613-8817(+)$1	1	12	15	8.9999
)))	chr1:154141753-154142036(-)$1	1	105	108	8.9999
...	chrM:8605-8809(+)$1	1	4	7	8.9999
)).	chr2:61244842-61245187(-)$1	1	58	61	8.9999
..)	chrM:12311-12526(+)$1	1	11	14	8.9999
..(	chr16:3334915-3335161(+)$1	1	52	55	8.9999
...	chrM:13723-13927(+)$1	1	12	15	8.9999
...	chrM:13647-13849(+)$1	1	88	91	8.9999
((.	chr11:57583262-57583522(+)$1	1	5	8	8.9999
...	chrM:10863-11066(+)$1	1	67	70	8.9999

#PSSM
C : 0.92	c : 0.07	
U : 0.92	u : 0.07	
C : 0.92	c : 0.07	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_CDS_m2_run2.nuc.txt

#NT
GAUGAAG	chr14:21679621-21679825(-)$1	204	104	111	12.9285
GAAGAAG	chr4:1730086-1730333(+)$1	247	0	7	17.2857
GCAGAAG	chr4:13605362-13605611(-)$1	249	152	159	13.6428
GAUGAAG	chr1:245019710-245019935(-)$1	225	92	99	12.9285
GAAGAAG	chr1:171509475-171509716(+)$1	241	142	149	17.2857
CAAGAAG	chr10:79781506-79781811(-)$1	305	147	154	13.4999
GUAGAAG	chr1:23419530-23419784(-)$1	254	101	108	13.4285
GAAGAAG	chr5:139838264-139838546(+)$1	282	95	102	17.2857
GAUGAAG	chr15:63961648-63961870(-)$1	222	64	71	12.9285
GAAGAAA	chr19:10273284-10273526(-)$1	242	121	128	12.7142
gaagaag	chr11:63978430-63978641(+)$1	211	136	143	17.2857
GAAGGAG	chr19:39959829-39960108(+)$1	279	73	80	12.9999
GAAGAAG	chr10:32319930-32320239(-)$1	309	113	120	17.2857
AAAGAAG	chr18:2595447-2595695(+)$1	248	164	171	13.5714
GAAGAUG	chr2:39008611-39009015(+)$1	404	69	76	12.5714
UAAGAAG	chr17:30226643-30226849(-)$1	206	109	116	13.2142
GAAGCAG	chr15:91034540-91034878(+)$1	338	24	31	12.8571
GGAGAAG	chr5:180277791-180278094(-)$1	303	178	185	13.4999
AAAGAAG	chr20:39706145-39706376(+)$1	231	102	109	13.5714
GAACAAG	chr1:8927949-8928213(-)$1	264	112	119	13.2142
GAAGAAG	chr7:97936993-97937273(-)$1	280	126	133	17.2857
GUAGAAG	chr5:140056139-140056371(-)$1	232	151	158	13.4285
GAGGAAG	chr6:30884560-30884811(+)$1	251	241	248	12.8571
GAAGAAG	chr1:244600024-244600266(-)$1	242	106	113	17.2857
AAAGAAG	chr4:83348559-83348776(-)$1	217	99	106	13.5714
GGAGAAG	chr10:75558659-75558895(+)$1	236	114	121	13.4999
gaagaag	chr8:30945293-30945520(+)$1	227	85	92	17.2857
GACGAAG	chr15:91517720-91517954(-)$1	234	172	179	12.7857
GAAGGAG	chr22:18314582-18314849(-)$1	267	63	70	12.9999
GAAAAAG	chr1:186307240-186307473(-)$1	233	222	229	13.4285
GAAAAAG	chr5:140954434-140954696(-)$1	262	27	34	13.4285
AAAGAAG	chr17:30687615-30687840(+)$1	225	11	18	13.5714
GCAGAAG	chr2:85766344-85766600(+)$1	256	192	199	13.6428
CAAGAAG	chr9:114184115-114184387(-)$1	272	91	98	13.4999
GAAGCAG	chrX:48837921-48838182(-)$1	261	168	175	12.8571
GAAGAAA	chr5:96077098-96077384(+)$1	286	164	171	12.7142
AAAGAAG	chrX:102931541-102931859(-)$1	318	23	30	13.5714
GAAGGAG	chr5:157285839-157286136(-)$1	297	25	32	12.9999
CAAGAAG	chr17:37360291-37360536(+)$1	245	134	141	13.4999
GAAGAAG	chr2:180835291-180835584(-)$1	293	141	148	17.2857
GAAGAAG	chr2:219134133-219134357(-)$1	224	138	145	17.2857
AAAGAAG	chr16:69402178-69402450(-)$1	272	0	7	13.5714
GAAAAAG	chr5:131915542-131915833(+)$1	291	111	118	13.4285
GAAGAAG	chr1:8716010-8716306(-)$1	296	165	172	17.2857
GAAGAAG	chr5:108704176-108704438(-)$1	262	142	149	17.2857
CAAGAAG	chr17:74392175-74392432(-)$1	257	6	13	13.4999
GCAGAAG	chr8:145154558-145154819(-)$1	261	68	75	13.6428
GAAGAAA	chr1:202722052-202722281(-)$1	229	149	156	12.7142
GAAGAAG	chr8:61750558-61750823(+)$1	265	172	179	17.2857
GAAGAAG	chr16:89349902-89350171(-)$1	269	251	258	17.2857
GAACAAG	chr19:47588211-47588446(-)$1	235	82	89	13.2142
GAAGAAG	chr6:26216697-26216949(-)$1	252	110	117	17.2857
GCAGAAG	chr6:35840240-35840454(-)$1	214	60	67	13.6428
GAAAAAG	chr2:71630945-71631211(+)$1	266	4	11	13.4285
GAAGAUG	chr5:77406017-77406277(-)$1	260	106	113	12.5714
GAAAAAG	chr12:72028383-72028594(-)$1	211	22	29	13.4285
GAAGGAG	chr22:50217276-50217608(-)$1	332	224	231	12.9999
GAAUAAG	chr3:9477311-9477522(+)$1	211	33	40	13.0714
GAAGAAG	chrX:135593907-135594167(+)$1	260	196	203	17.2857
CAAGAAG	chr1:245027452-245027685(-)$1	233	135	142	13.4999
GCAGAAG	chr21:33974545-33974777(-)$1	232	147	154	13.6428
GAACAAG	chr7:91622202-91622470(+)$1	268	29	36	13.2142
GUAGAAG	chr6:170110227-170110490(-)$1	263	159	166	13.4285
GAGGAAG	chr6:17817213-17817559(-)$1	346	6	13	12.8571
GCAGAAG	chr2:242187371-242187592(-)$1	221	153	160	13.6428
GGAGAAG	chrX:64748993-64749210(-)$1	217	20	27	13.4999
GAAAAAG	chr1:16256741-16256991(+)$1	250	90	97	13.4285
GAAGAAG	chr1:27271966-27272196(+)$1	230	205	212	17.2857
GAAGAAG	chr6:146262662-146262911(-)$1	249	187	194	17.2857

#otherMatches

#Struct PSSM
eeeeggg	chr2:44175475-44175731(-)$1	256	171	178	13.4999
dddd]dd	chr14:21679621-21679825(-)$1	204	104	111	12.9285
:::::::	chr4:1730086-1730333(+)$1	247	0	7	17.2857
ddmmmmd	chr4:13605362-13605611(-)$1	249	152	159	13.6428
vvvvvii	chr1:245019710-245019935(-)$1	225	92	99	12.9285
:::::::	chr1:171509475-171509716(+)$1	241	142	149	17.2857
cceeeee	chr10:79781506-79781811(-)$1	305	147	154	13.4999
c!!dddd	chr1:23419530-23419784(-)$1	254	101	108	13.4285
zzzzzzz	chr5:139838264-139838546(+)$1	282	95	102	17.2857
hhhhhhh	chr15:63961648-63961870(-)$1	222	64	71	12.9285
JJJJJJJ	chr19:10273284-10273526(-)$1	242	121	128	12.7142
pppppee	chr11:63978430-63978641(+)$1	211	136	143	17.2857
EEE{A::	chr19:39959829-39960108(+)$1	279	73	80	12.9999
nnccc:f	chr10:32319930-32320239(-)$1	309	113	120	17.2857
d::dddd	chr18:2595447-2595695(+)$1	248	164	171	13.5714
CCC{CCC	chr2:39008611-39009015(+)$1	404	69	76	12.5714
:::eeee	chr17:30226643-30226849(-)$1	206	109	116	13.2142
eeee]cc	chr15:91034540-91034878(+)$1	338	24	31	12.8571
}A?????	chr5:180277791-180278094(-)$1	303	178	185	13.4999
((((((g	chr20:39706145-39706376(+)$1	231	102	109	13.5714
c!!cccp	chr1:8927949-8928213(-)$1	264	112	119	13.2142
:::::ee	chr7:97936993-97937273(-)$1	280	126	133	17.2857
d777777	chr5:140056139-140056371(-)$1	232	151	158	13.4285
EEEE:::	chr6:30884560-30884811(+)$1	251	241	248	12.8571
mmmmeee	chr1:244600024-244600266(-)$1	242	106	113	17.2857
wwwwwww	chr4:83348559-83348776(-)$1	217	99	106	13.5714
dddd]cc	chr10:75558659-75558895(+)$1	236	114	121	13.4999
eeeee33	chr8:30945293-30945520(+)$1	227	85	92	17.2857
qqccc::	chr15:91517720-91517954(-)$1	234	172	179	12.7857
""fffff	chr22:18314582-18314849(-)$1	267	63	70	12.9999
:::::::	chr1:186307240-186307473(-)$1	233	222	229	13.4285
:::::::	chr5:140954434-140954696(-)$1	262	27	34	13.4285
::dddd[	chr17:30687615-30687840(+)$1	225	11	18	13.5714
HH~~~~G	chr2:85766344-85766600(+)$1	256	192	199	13.6428
ffff!!f	chr9:114184115-114184387(-)$1	272	91	98	13.4999
JJJJJJA	chrX:48837921-48838182(-)$1	261	168	175	12.8571
^^^^^^^	chr5:96077098-96077384(+)$1	286	164	171	12.7142
C:::::b	chrX:102931541-102931859(-)$1	318	23	30	13.5714
ddd####	chr5:157285839-157286136(-)$1	297	25	32	12.9999
eeeeccc	chr17:37360291-37360536(+)$1	245	134	141	13.4999
ttttttt	chr2:180835291-180835584(-)$1	293	141	148	17.2857
d333fff	chr2:219134133-219134357(-)$1	224	138	145	17.2857
:ffffff	chr16:69402178-69402450(-)$1	272	0	7	13.5714
ppppppp	chr5:131915542-131915833(+)$1	291	111	118	13.4285
b::::::	chr1:8716010-8716306(-)$1	296	165	172	17.2857
hhhhh[b	chr5:108704176-108704438(-)$1	262	142	149	17.2857
:::GGGG	chr17:74392175-74392432(-)$1	257	6	13	13.4999
ffbbnnn	chr8:145154558-145154819(-)$1	261	68	75	13.6428
zzzzzzz	chr1:202722052-202722281(-)$1	229	149	156	12.7142
mmdddd6	chr8:61750558-61750823(+)$1	265	172	179	17.2857
::::::B	chr16:89349902-89350171(-)$1	269	251	258	17.2857
[ccc!!a	chr19:47588211-47588446(-)$1	235	82	89	13.2142
oooooob	chr6:26216697-26216949(-)$1	252	110	117	17.2857
##bb[cc	chr6:35840240-35840454(-)$1	214	60	67	13.6428
FF::::f	chr2:71630945-71631211(+)$1	266	4	11	13.4285
iiccca[	chr5:77406017-77406277(-)$1	260	106	113	12.5714
nnnnncc	chr12:72028383-72028594(-)$1	211	22	29	13.4285
bb]ccc:	chr22:50217276-50217608(-)$1	332	224	231	12.9999
frrrrrr	chr3:9477311-9477522(+)$1	211	33	40	13.0714
nnnnnbb	chrX:135593907-135594167(+)$1	260	196	203	17.2857
e666666	chr1:245027452-245027685(-)$1	233	135	142	13.4999
bb::::e	chr21:33974545-33974777(-)$1	232	147	154	13.6428
ooooood	chr7:91622202-91622470(+)$1	268	29	36	13.2142
IIIIIII	chr6:170110227-170110490(-)$1	263	159	166	13.4285
ggg[ddd	chr6:17817213-17817559(-)$1	346	6	13	12.8571
:::::::	chr2:242187371-242187592(-)$1	221	153	160	13.6428
FFF:::C	chrX:64748993-64749210(-)$1	217	20	27	13.4999
:::::ff	chr1:16256741-16256991(+)$1	250	90	97	13.4285
gggg333	chr1:27271966-27272196(+)$1	230	205	212	17.2857
DDBBZZZ	chr6:146262662-146262911(-)$1	249	187	194	17.2857

#DB
))))(((	chr2:44175475-44175731(-)$1	1	171	178	13.4999
)))).))	chr14:21679621-21679825(-)$1	1	104	111	12.9285
.......	chr4:1730086-1730333(+)$1	1	0	7	17.2857
((....)	chr4:13605362-13605611(-)$1	1	152	159	13.6428
.....))	chr1:245019710-245019935(-)$1	1	92	99	12.9285
.......	chr1:171509475-171509716(+)$1	1	142	149	17.2857
(((((((	chr10:79781506-79781811(-)$1	1	147	154	13.4999
(..((((	chr1:23419530-23419784(-)$1	1	101	108	13.4285
.......	chr5:139838264-139838546(+)$1	1	95	102	17.2857
)))))))	chr15:63961648-63961870(-)$1	1	64	71	12.9285
(((((((	chr19:10273284-10273526(-)$1	1	121	128	12.7142
.....))	chr11:63978430-63978641(+)$1	1	136	143	17.2857
(((.(..	chr19:39959829-39960108(+)$1	1	73	80	12.9999
..))).(	chr10:32319930-32320239(-)$1	1	113	120	17.2857
)..((((	chr18:2595447-2595695(+)$1	1	164	171	13.5714
(((.(((	chr2:39008611-39009015(+)$1	1	69	76	12.5714
...((((	chr17:30226643-30226849(-)$1	1	109	116	13.2142
)))).))	chr15:91034540-91034878(+)$1	1	24	31	12.8571
.).....	chr5:180277791-180278094(-)$1	1	178	185	13.4999
......(	chr20:39706145-39706376(+)$1	1	102	109	13.5714
(..(((.	chr1:8927949-8928213(-)$1	1	112	119	13.2142
.....((	chr7:97936993-97937273(-)$1	1	126	133	17.2857
)......	chr5:140056139-140056371(-)$1	1	151	158	13.4285
))))...	chr6:30884560-30884811(+)$1	1	241	248	12.8571
....)))	chr1:244600024-244600266(-)$1	1	106	113	17.2857
.......	chr4:83348559-83348776(-)$1	1	99	106	13.5714
)))).))	chr10:75558659-75558895(+)$1	1	114	121	13.4999
)))))..	chr8:30945293-30945520(+)$1	1	85	92	17.2857
..)))..	chr15:91517720-91517954(-)$1	1	172	179	12.7857
..(((((	chr22:18314582-18314849(-)$1	1	63	70	12.9999
.......	chr1:186307240-186307473(-)$1	1	222	229	13.4285
.......	chr5:140954434-140954696(-)$1	1	27	34	13.4285
..((((.	chr17:30687615-30687840(+)$1	1	11	18	13.5714
))....)	chr2:85766344-85766600(+)$1	1	192	199	13.6428
((((..(	chr9:114184115-114184387(-)$1	1	91	98	13.4999
(((((((	chrX:48837921-48838182(-)$1	1	168	175	12.8571
.......	chr5:96077098-96077384(+)$1	1	164	171	12.7142
(.....(	chrX:102931541-102931859(-)$1	1	23	30	13.5714
(((....	chr5:157285839-157286136(-)$1	1	25	32	12.9999
(((((((	chr17:37360291-37360536(+)$1	1	134	141	13.4999
.......	chr2:180835291-180835584(-)$1	1	141	148	17.2857
)...)))	chr2:219134133-219134357(-)$1	1	138	145	17.2857
.((((((	chr16:69402178-69402450(-)$1	1	0	7	13.5714
.......	chr5:131915542-131915833(+)$1	1	111	118	13.4285
)......	chr1:8716010-8716306(-)$1	1	165	172	17.2857
(((((.(	chr5:108704176-108704438(-)$1	1	142	149	17.2857
...((((	chr17:74392175-74392432(-)$1	1	6	13	13.4999
((((...	chr8:145154558-145154819(-)$1	1	68	75	13.6428
.......	chr1:202722052-202722281(-)$1	1	149	156	12.7142
..)))).	chr8:61750558-61750823(+)$1	1	172	179	17.2857
......)	chr16:89349902-89350171(-)$1	1	251	258	17.2857
.(((..(	chr19:47588211-47588446(-)$1	1	82	89	13.2142
......)	chr6:26216697-26216949(-)$1	1	110	117	17.2857
..((.((	chr6:35840240-35840454(-)$1	1	60	67	13.6428
((....(	chr2:71630945-71631211(+)$1	1	4	11	13.4285
((((((.	chr5:77406017-77406277(-)$1	1	106	113	12.5714
.....))	chr12:72028383-72028594(-)$1	1	22	29	13.4285
)).))).	chr22:50217276-50217608(-)$1	1	224	231	12.9999
(......	chr3:9477311-9477522(+)$1	1	33	40	13.0714
.....))	chrX:135593907-135594167(+)$1	1	196	203	17.2857
)......	chr1:245027452-245027685(-)$1	1	135	142	13.4999
))....(	chr21:33974545-33974777(-)$1	1	147	154	13.6428
......)	chr7:91622202-91622470(+)$1	1	29	36	13.2142
(((((((	chr6:170110227-170110490(-)$1	1	159	166	13.4285
(((.(((	chr6:17817213-17817559(-)$1	1	6	13	12.8571
.......	chr2:242187371-242187592(-)$1	1	153	160	13.6428
(((...(	chrX:64748993-64749210(-)$1	1	20	27	13.4999
.....((	chr1:16256741-16256991(+)$1	1	90	97	13.4285
))))...	chr1:27271966-27272196(+)$1	1	205	212	17.2857
))))...	chr6:146262662-146262911(-)$1	1	187	194	17.2857

#PSSM
G : 0.79	A : 0.08	C : 0.07	g : 0.02	U : 0.01	
A : 0.78	C : 0.08	G : 0.05	U : 0.04	a : 0.02	
A : 0.88	U : 0.04	a : 0.02	G : 0.02	C : 0.01	
G : 0.82	A : 0.08	C : 0.04	g : 0.02	U : 0.01	
A : 0.88	G : 0.05	a : 0.02	C : 0.02	
A : 0.94	a : 0.02	U : 0.02	
G : 0.92	A : 0.04	g : 0.02	

#score	1000.9999999999985
#seq	70
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_UTR_m1_run2.nuc.txt

#NT
UUCUG	chr6:33237438-33237682(-)$1	244	24	29	11.6326
UUCUU	chr2:61406182-61406406(+)$1	224	87	92	11.8367
UUCUC	chr22:24765124-24765384(+)$1	260	3	8	11.1224
UUCUC	chr17:61843315-61843642(-)$1	327	94	99	11.1224
UUCUG	chr2:239162089-239162404(-)$1	315	50	55	11.6326
UUCUC	chr17:34856615-34856896(-)$1	281	88	93	11.1224
UUCUG	chr6:56350041-56350282(-)$1	241	43	48	11.6326
UUCUG	chr4:39901980-39902228(-)$1	248	236	241	11.6326
UUCUG	chr17:56429337-56429632(-)$1	295	54	59	11.6326
UUCUA	chr6:36076055-36076328(+)$1	273	95	100	10.4081
UUCUU	chr9:84267070-84267303(-)$1	233	79	84	11.8367
UUCUA	chr8:128752568-128752811(+)$1	243	53	58	10.4081
UUCUG	chr19:10597267-10597581(-)$1	314	23	28	11.6326
UUCUC	chr2:242598423-242598679(+)$1	256	81	86	11.1224
UUCUU	chr11:62364997-62365281(-)$1	284	184	189	11.8367
UUCUU	chr20:18122821-18123076(+)$1	255	15	20	11.8367
UUCUU	chr14:94674739-94675003(+)$1	264	50	55	11.8367
UUCUG	chr18:23667359-23667634(-)$1	275	20	25	11.6326
UUCUG	chr2:232576575-232576793(+)$1	218	11	16	11.6326
uucuu	chr20:43034721-43034959(+)$1	238	166	171	11.8367
UUCUU	chr7:26400492-26400778(+)$1	286	77	82	11.8367
UUCUU	chr17:34869169-34869388(-)$1	219	29	34	11.8367
UUCUU	chr10:121339346-121339555(-)$1	209	21	26	11.8367
UUCUG	chr3:9845426-9845672(+)$1	246	116	121	11.6326
UUCUA	chr19:16301944-16302217(+)$1	273	66	71	10.4081
UUCUC	chr3:123667448-123667697(-)$1	249	46	51	11.1224
UUCUU	chr6:56324829-56325104(-)$1	275	191	196	11.8367
uucuu	chr17:43226388-43226626(+)$1	238	81	86	11.8367
UUCUU	chr19:53594778-53595074(-)$1	296	73	78	11.8367
UUCUG	chr10:102289034-102289277(-)$1	243	1	6	11.6326
UUCUC	chr12:58109801-58110043(+)$1	242	63	68	11.1224
UUCUC	chr3:48573622-48573914(-)$1	292	4	9	11.1224
UUCUU	chr2:220097114-220097402(+)$1	288	253	258	11.8367
UUCUC	chr9:127982774-127983061(+)$1	287	28	33	11.1224
UUCUA	chr17:46051277-46051491(+)$1	214	13	18	10.4081
UUCUC	chr20:57243071-57243284(+)$1	213	151	156	11.1224
UUCUU	chr17:48777922-48778176(-)$1	254	86	91	11.8367
UUCUG	chr7:140494021-140494320(-)$1	299	267	272	11.6326
UUCUG	chr8:124340403-124340654(-)$1	251	202	207	11.6326
UUCUU	chr5:134119992-134120260(+)$1	268	38	43	11.8367
UUCUG	chr5:179020413-179020709(+)$1	296	17	22	11.6326
UUCUG	chr1:22054997-22055277(-)$1	280	50	55	11.6326
UUCUC	chr1:205719012-205719219(-)$1	207	87	92	11.1224
UUCUG	chr3:47129500-47129737(-)$1	237	162	167	11.6326
UUCUU	chr22:36912425-36912638(-)$1	213	203	208	11.8367
UUCUG	chr3:33450839-33451088(-)$1	249	169	174	11.6326
UUCUC	chr15:68378750-68379147(+)$1	397	201	206	11.1224
UUCUU	chr2:190320017-190320266(+)$1	249	16	21	11.8367

#otherMatches

#Struct PSSM
GGGGG	chr3:51425170-51425408(+)$1	238	157	162	11.8367
CC{HH	chr6:33237438-33237682(-)$1	244	24	29	11.6326
dddd[	chr2:61406182-61406406(+)$1	224	87	92	11.8367
HHHHH	chr22:24765124-24765384(+)$1	260	3	8	11.1224
^====	chr17:61843315-61843642(-)$1	327	94	99	11.1224
II::c	chr2:239162089-239162404(-)$1	315	50	55	11.6326
=====	chr17:34856615-34856896(-)$1	281	88	93	11.1224
Edddd	chr6:56350041-56350282(-)$1	241	43	48	11.6326
EE}BB	chr4:39901980-39902228(-)$1	248	236	241	11.6326
fffff	chr17:56429337-56429632(-)$1	295	54	59	11.6326
:::dd	chr6:36076055-36076328(+)$1	273	95	100	10.4081
'''''	chr9:84267070-84267303(-)$1	233	79	84	11.8367
hhhh"	chr8:128752568-128752811(+)$1	243	53	58	10.4081
^^^^^	chr19:10597267-10597581(-)$1	314	23	28	11.6326
dddff	chr2:242598423-242598679(+)$1	256	81	86	11.1224
3dddd	chr11:62364997-62365281(-)$1	284	184	189	11.8367
iiiii	chr20:18122821-18123076(+)$1	255	15	20	11.8367
ggggg	chr14:94674739-94675003(+)$1	264	50	55	11.8367
::FFF	chr18:23667359-23667634(-)$1	275	20	25	11.6326
====[	chr2:232576575-232576793(+)$1	218	11	16	11.6326
eeeeo	chr20:43034721-43034959(+)$1	238	166	171	11.8367
fffff	chr7:26400492-26400778(+)$1	286	77	82	11.8367
ggggg	chr17:34869169-34869388(-)$1	219	29	34	11.8367
qqqqq	chr10:121339346-121339555(-)$1	209	21	26	11.8367
mmeee	chr3:9845426-9845672(+)$1	246	116	121	11.6326
ttttt	chr19:16301944-16302217(+)$1	273	66	71	10.4081
rbb44	chr3:123667448-123667697(-)$1	249	46	51	11.1224
JJJJJ	chr6:56324829-56325104(-)$1	275	191	196	11.8367
:::hh	chr17:43226388-43226626(+)$1	238	81	86	11.8367
ggmmm	chr19:53594778-53595074(-)$1	296	73	78	11.8367
:::::	chr10:102289034-102289277(-)$1	243	1	6	11.6326
bdddd	chr12:58109801-58110043(+)$1	242	63	68	11.1224
:::::	chr3:48573622-48573914(-)$1	292	4	9	11.1224
DD}II	chr2:220097114-220097402(+)$1	288	253	258	11.8367
:::::	chr9:127982774-127983061(+)$1	287	28	33	11.1224
EEKKC	chr17:46051277-46051491(+)$1	214	13	18	10.4081
55eee	chr20:57243071-57243284(+)$1	213	151	156	11.1224
JJJJJ	chr17:48777922-48778176(-)$1	254	86	91	11.8367
~FFFF	chr7:140494021-140494320(-)$1	299	267	272	11.6326
FFFFF	chr8:124340403-124340654(-)$1	251	202	207	11.6326
JJJJJ	chr5:134119992-134120260(+)$1	268	38	43	11.8367
fff[b	chr5:179020413-179020709(+)$1	296	17	22	11.6326
e[iii	chr1:22054997-22055277(-)$1	280	50	55	11.6326
C{DDD	chr1:205719012-205719219(-)$1	207	87	92	11.1224
=====	chr3:47129500-47129737(-)$1	237	162	167	11.6326
:::::	chr22:36912425-36912638(-)$1	213	203	208	11.8367
ooooo	chr3:33450839-33451088(-)$1	249	169	174	11.6326
eee!!	chr15:68378750-68379147(+)$1	397	201	206	11.1224
!iiii	chr2:190320017-190320266(+)$1	249	16	21	11.8367

#DB
)))))	chr3:51425170-51425408(+)$1	1	157	162	11.8367
((.((	chr6:33237438-33237682(-)$1	1	24	29	11.6326
((((.	chr2:61406182-61406406(+)$1	1	87	92	11.8367
(((((	chr22:24765124-24765384(+)$1	1	3	8	11.1224
.))))	chr17:61843315-61843642(-)$1	1	94	99	11.1224
((..(	chr2:239162089-239162404(-)$1	1	50	55	11.6326
)))))	chr17:34856615-34856896(-)$1	1	88	93	11.1224
(((((	chr6:56350041-56350282(-)$1	1	43	48	11.6326
)).))	chr4:39901980-39902228(-)$1	1	236	241	11.6326
)))))	chr17:56429337-56429632(-)$1	1	54	59	11.6326
...((	chr6:36076055-36076328(+)$1	1	95	100	10.4081
.....	chr9:84267070-84267303(-)$1	1	79	84	11.8367
((((.	chr8:128752568-128752811(+)$1	1	53	58	10.4081
.....	chr19:10597267-10597581(-)$1	1	23	28	11.6326
)))((	chr2:242598423-242598679(+)$1	1	81	86	11.1224
.))))	chr11:62364997-62365281(-)$1	1	184	189	11.8367
(((((	chr20:18122821-18123076(+)$1	1	15	20	11.8367
(((((	chr14:94674739-94675003(+)$1	1	50	55	11.8367
..(((	chr18:23667359-23667634(-)$1	1	20	25	11.6326
((((.	chr2:232576575-232576793(+)$1	1	11	16	11.6326
((((.	chr20:43034721-43034959(+)$1	1	166	171	11.8367
)))))	chr7:26400492-26400778(+)$1	1	77	82	11.8367
(((((	chr17:34869169-34869388(-)$1	1	29	34	11.8367
.....	chr10:121339346-121339555(-)$1	1	21	26	11.8367
..)))	chr3:9845426-9845672(+)$1	1	116	121	11.6326
.....	chr19:16301944-16302217(+)$1	1	66	71	10.4081
.))..	chr3:123667448-123667697(-)$1	1	46	51	11.1224
)))))	chr6:56324829-56325104(-)$1	1	191	196	11.8367
...((	chr17:43226388-43226626(+)$1	1	81	86	11.8367
((...	chr19:53594778-53595074(-)$1	1	73	78	11.8367
.....	chr10:102289034-102289277(-)$1	1	1	6	11.6326
(((((	chr12:58109801-58110043(+)$1	1	63	68	11.1224
.....	chr3:48573622-48573914(-)$1	1	4	9	11.1224
)).))	chr2:220097114-220097402(+)$1	1	253	258	11.8367
.....	chr9:127982774-127983061(+)$1	1	28	33	11.1224
((..(	chr17:46051277-46051491(+)$1	1	13	18	10.4081
..)))	chr20:57243071-57243284(+)$1	1	151	156	11.1224
(((((	chr17:48777922-48778176(-)$1	1	86	91	11.8367
.))))	chr7:140494021-140494320(-)$1	1	267	272	11.6326
)))))	chr8:124340403-124340654(-)$1	1	202	207	11.6326
(((((	chr5:134119992-134120260(+)$1	1	38	43	11.8367
(((.(	chr5:179020413-179020709(+)$1	1	17	22	11.6326
(.(((	chr1:22054997-22055277(-)$1	1	50	55	11.6326
(.(((	chr1:205719012-205719219(-)$1	1	87	92	11.1224
(((((	chr3:47129500-47129737(-)$1	1	162	167	11.6326
.....	chr22:36912425-36912638(-)$1	1	203	208	11.8367
.....	chr3:33450839-33451088(-)$1	1	169	174	11.6326
(((..	chr15:68378750-68379147(+)$1	1	201	206	11.1224
.((((	chr2:190320017-190320266(+)$1	1	16	21	11.8367

#PSSM
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
U : 0.32	G : 0.32	C : 0.22	A : 0.08	u : 0.04	

#score	563.1632653061233
#seq	49
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_CDS_m1_run2.nuc.txt

#NT
CCAGG	chr9:135975654-135975898(-)$1	244	86	91	15.0000
CCAGG	chr7:128477300-128477554(+)$1	254	7	12	15.0000
ccagg	chr11:64971988-64972262(+)$1	274	41	46	15.0000
CCAGG	chr22:42300765-42300986(+)$1	221	63	68	15.0000
CCAGG	chr15:66781394-66781673(+)$1	279	123	128	15.0000
CCAGG	chr1:44713605-44713863(-)$1	258	149	154	15.0000
CCAGG	chr19:45570432-45570721(+)$1	289	95	100	15.0000
CCAGG	chr15:91461268-91461527(+)$1	259	17	22	15.0000
CCAGG	chr16:29816287-29816559(+)$1	272	56	61	15.0000
CCAGG	chrX:53227653-53227981(-)$1	328	158	163	15.0000
CCAGG	chr2:27261204-27261458(+)$1	254	71	76	15.0000
CCAGG	chr2:27448848-27449110(+)$1	262	10	15	15.0000
CCAGG	chr19:615649-615910(+)$1	261	209	214	15.0000
CCAGG	chr19:4362620-4362882(-)$1	262	8	13	15.0000
CCAGG	chr14:91939607-91939866(-)$1	259	148	153	15.0000
CCAGG	chr6:31604683-31604921(+)$1	238	4	9	15.0000
CCAGG	chr12:6495087-6495335(+)$1	248	237	242	15.0000
CCAGG	chr3:126732702-126732971(+)$1	269	1	6	15.0000
ccagg	chr6:79787079-79787370(-)$1	291	186	191	15.0000
CCAGG	chr8:41559546-41559836(-)$1	290	170	175	15.0000
CCAGG	chr3:167414806-167415062(-)$1	256	163	168	15.0000
CCAGG	chrX:70352085-70352329(+)$1	244	204	209	15.0000
CCAGG	chr7:100276165-100276434(+)$1	269	86	91	15.0000
CCAGG	chr4:1348363-1348637(+)$1	274	268	273	15.0000
CCAGG	chr2:131126532-131126842(+)$1	310	196	201	15.0000
CCAGG	chr19:39879210-39879470(-)$1	260	150	155	15.0000
CCAGG	chr21:45735979-45736297(+)$1	318	61	66	15.0000
CCAGG	chr19:45562376-45562660(+)$1	284	177	182	15.0000
CCAGG	chr16:88945740-88946025(-)$1	285	73	78	15.0000
CCAGG	chr20:60882272-60882549(+)$1	277	14	19	15.0000
CCAGG	chr15:93543617-93543919(+)$1	302	120	125	15.0000
CCAGG	chr1:202989779-202990048(+)$1	269	218	223	15.0000
CCAGG	chr17:45894107-45894388(-)$1	281	80	85	15.0000
CCAGG	chr8:144696970-144697249(-)$1	279	57	62	15.0000
CCAGG	chr19:3661865-3662236(-)$1	371	107	112	15.0000
CCAGG	chr10:70967392-70967691(+)$1	299	160	165	15.0000
CCAGG	chr19:11257842-11258104(-)$1	262	193	198	15.0000
CCAGG	chr9:35714761-35715019(-)$1	258	85	90	15.0000
CCAGG	chr22:22313434-22313673(-)$1	239	166	171	15.0000
CCAGG	chr6:33179559-33179813(+)$1	254	46	51	15.0000
CCAGG	chr9:123636220-123636487(-)$1	267	11	16	15.0000
CCAGG	chr19:13050083-13050342(+)$1	259	171	176	15.0000
CCAGG	chr19:36558552-36558840(+)$1	288	173	178	15.0000
CCAGG	chr9:117130761-117131033(-)$1	272	217	222	15.0000
CCAGG	chr8:145012757-145013026(-)$1	269	61	66	15.0000
ccagg	chr1:33490055-33490324(-)$1	269	79	84	15.0000
CCAGG	chr21:45172242-45172517(+)$1	275	70	75	15.0000
CCAGG	chr3:47456550-47456841(-)$1	291	118	123	15.0000
CCAGG	chr12:125262979-125263280(-)$1	301	172	177	15.0000
CCAGG	chr1:228335946-228336187(+)$1	241	108	113	15.0000
CCAGG	chr7:23561322-23561609(-)$1	287	280	285	15.0000
ccagg	chr6:17646236-17646531(-)$1	295	22	27	15.0000

#otherMatches

#Struct PSSM
GGGGG	chr16:67916436-67916692(+)$1	256	8	13	15.0000
"eeee	chr9:135975654-135975898(-)$1	244	86	91	15.0000
FFFFF	chr7:128477300-128477554(+)$1	254	7	12	15.0000
ii!!d	chr11:64971988-64972262(+)$1	274	41	46	15.0000
cc[dd	chr22:42300765-42300986(+)$1	221	63	68	15.0000
===='	chr15:66781394-66781673(+)$1	279	123	128	15.0000
eeedd	chr1:44713605-44713863(-)$1	258	149	154	15.0000
ff[bb	chr19:45570432-45570721(+)$1	289	95	100	15.0000
hhhhh	chr15:91461268-91461527(+)$1	259	17	22	15.0000
ff]bb	chr16:29816287-29816559(+)$1	272	56	61	15.0000
fqqqq	chrX:53227653-53227981(-)$1	328	158	163	15.0000
f!!dd	chr2:27261204-27261458(+)$1	254	71	76	15.0000
bb[dd	chr2:27448848-27449110(+)$1	262	10	15	15.0000
:::::	chr19:615649-615910(+)$1	261	209	214	15.0000
LDDDD	chr19:4362620-4362882(-)$1	262	8	13	15.0000
vvvff	chr14:91939607-91939866(-)$1	259	148	153	15.0000
DDDD:	chr6:31604683-31604921(+)$1	238	4	9	15.0000
nnnnc	chr12:6495087-6495335(+)$1	248	237	242	15.0000
beeee	chr3:126732702-126732971(+)$1	269	1	6	15.0000
dd]bb	chr6:79787079-79787370(-)$1	291	186	191	15.0000
555dd	chr8:41559546-41559836(-)$1	290	170	175	15.0000
ucccd	chr3:167414806-167415062(-)$1	256	163	168	15.0000
::::F	chrX:70352085-70352329(+)$1	244	204	209	15.0000
GDDDD	chr7:100276165-100276434(+)$1	269	86	91	15.0000
:::::	chr4:1348363-1348637(+)$1	274	268	273	15.0000
hhhh!	chr2:131126532-131126842(+)$1	310	196	201	15.0000
nnndd	chr19:39879210-39879470(-)$1	260	150	155	15.0000
fbbcc	chr21:45735979-45736297(+)$1	318	61	66	15.0000
444dd	chr19:45562376-45562660(+)$1	284	177	182	15.0000
sssgg	chr16:88945740-88946025(-)$1	285	73	78	15.0000
ggggg	chr20:60882272-60882549(+)$1	277	14	19	15.0000
dwwww	chr15:93543617-93543919(+)$1	302	120	125	15.0000
dd$$$	chr1:202989779-202990048(+)$1	269	218	223	15.0000
nnccc	chr17:45894107-45894388(-)$1	281	80	85	15.0000
dddEE	chr8:144696970-144697249(-)$1	279	57	62	15.0000
%%fff	chr19:3661865-3662236(-)$1	371	107	112	15.0000
ddd[d	chr10:70967392-70967691(+)$1	299	160	165	15.0000
fffff	chr19:11257842-11258104(-)$1	262	193	198	15.0000
eeeee	chr9:35714761-35715019(-)$1	258	85	90	15.0000
::ddd	chr22:22313434-22313673(-)$1	239	166	171	15.0000
bb:ee	chr6:33179559-33179813(+)$1	254	46	51	15.0000
:::ee	chr9:123636220-123636487(-)$1	267	11	16	15.0000
GGGGG	chr19:13050083-13050342(+)$1	259	171	176	15.0000
hhhhh	chr19:36558552-36558840(+)$1	288	173	178	15.0000
3hhhh	chr9:117130761-117131033(-)$1	272	217	222	15.0000
ecccd	chr8:145012757-145013026(-)$1	269	61	66	15.0000
ccddd	chr1:33490055-33490324(-)$1	269	79	84	15.0000
qqqqq	chr21:45172242-45172517(+)$1	275	70	75	15.0000
mmmmg	chr3:47456550-47456841(-)$1	291	118	123	15.0000
nnncc	chr12:125262979-125263280(-)$1	301	172	177	15.0000
hhhhh	chr1:228335946-228336187(+)$1	241	108	113	15.0000
EEEEE	chr7:23561322-23561609(-)$1	287	280	285	15.0000
bbbmm	chr6:17646236-17646531(-)$1	295	22	27	15.0000

#DB
(((((	chr16:67916436-67916692(+)$1	1	8	13	15.0000
.((((	chr9:135975654-135975898(-)$1	1	86	91	15.0000
(((((	chr7:128477300-128477554(+)$1	1	7	12	15.0000
((..(	chr11:64971988-64972262(+)$1	1	41	46	15.0000
((.((	chr22:42300765-42300986(+)$1	1	63	68	15.0000
((((.	chr15:66781394-66781673(+)$1	1	123	128	15.0000
)))((	chr1:44713605-44713863(-)$1	1	149	154	15.0000
((.((	chr19:45570432-45570721(+)$1	1	95	100	15.0000
(((((	chr15:91461268-91461527(+)$1	1	17	22	15.0000
)).))	chr16:29816287-29816559(+)$1	1	56	61	15.0000
(....	chrX:53227653-53227981(-)$1	1	158	163	15.0000
(..((	chr2:27261204-27261458(+)$1	1	71	76	15.0000
((.((	chr2:27448848-27449110(+)$1	1	10	15	15.0000
.....	chr19:615649-615910(+)$1	1	209	214	15.0000
.((((	chr19:4362620-4362882(-)$1	1	8	13	15.0000
...))	chr14:91939607-91939866(-)$1	1	148	153	15.0000
((((.	chr6:31604683-31604921(+)$1	1	4	9	15.0000
....)	chr12:6495087-6495335(+)$1	1	237	242	15.0000
(((((	chr3:126732702-126732971(+)$1	1	1	6	15.0000
)).))	chr6:79787079-79787370(-)$1	1	186	191	15.0000
...))	chr8:41559546-41559836(-)$1	1	170	175	15.0000
.)))(	chr3:167414806-167415062(-)$1	1	163	168	15.0000
....)	chrX:70352085-70352329(+)$1	1	204	209	15.0000
(((((	chr7:100276165-100276434(+)$1	1	86	91	15.0000
.....	chr4:1348363-1348637(+)$1	1	268	273	15.0000
((((.	chr2:131126532-131126842(+)$1	1	196	201	15.0000
...))	chr19:39879210-39879470(-)$1	1	150	155	15.0000
)))))	chr21:45735979-45736297(+)$1	1	61	66	15.0000
...))	chr19:45562376-45562660(+)$1	1	177	182	15.0000
...))	chr16:88945740-88946025(-)$1	1	73	78	15.0000
(((((	chr20:60882272-60882549(+)$1	1	14	19	15.0000
(....	chr15:93543617-93543919(+)$1	1	120	125	15.0000
((...	chr1:202989779-202990048(+)$1	1	218	223	15.0000
..)))	chr17:45894107-45894388(-)$1	1	80	85	15.0000
)))))	chr8:144696970-144697249(-)$1	1	57	62	15.0000
..(((	chr19:3661865-3662236(-)$1	1	107	112	15.0000
(((.(	chr10:70967392-70967691(+)$1	1	160	165	15.0000
)))))	chr19:11257842-11258104(-)$1	1	193	198	15.0000
)))))	chr9:35714761-35715019(-)$1	1	85	90	15.0000
..(((	chr22:22313434-22313673(-)$1	1	166	171	15.0000
)).((	chr6:33179559-33179813(+)$1	1	46	51	15.0000
...((	chr9:123636220-123636487(-)$1	1	11	16	15.0000
)))))	chr19:13050083-13050342(+)$1	1	171	176	15.0000
)))))	chr19:36558552-36558840(+)$1	1	173	178	15.0000
.))))	chr9:117130761-117131033(-)$1	1	217	222	15.0000
))))(	chr8:145012757-145013026(-)$1	1	61	66	15.0000
(((((	chr1:33490055-33490324(-)$1	1	79	84	15.0000
.....	chr21:45172242-45172517(+)$1	1	70	75	15.0000
....)	chr3:47456550-47456841(-)$1	1	118	123	15.0000
...))	chr12:125262979-125263280(-)$1	1	172	177	15.0000
)))))	chr1:228335946-228336187(+)$1	1	108	113	15.0000
)))))	chr7:23561322-23561609(-)$1	1	280	285	15.0000
(((..	chr6:17646236-17646531(-)$1	1	22	27	15.0000

#PSSM
C : 0.92	c : 0.07	
C : 0.92	c : 0.07	
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	

#score	795.0
#seq	53
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_UTR_m3_run1.nuc.txt

#NT
ucuuuucu	chr4:114374722-114375030(-)$1	308	88	96	16.7343
CCUUUUCU	chrX:122735240-122735498(-)$1	258	21	29	19.7812
CCUUUCCU	chr14:24778660-24778912(+)$1	252	94	102	16.1093
CCUUUUCU	chr3:120047451-120047701(-)$1	250	129	137	19.7812
ccuuuccu	chr17:41008914-41009279(+)$1	365	101	109	16.1093
ccuucucu	chr6:30875934-30876217(+)$1	283	66	74	15.4843
cuuuuucu	chr16:74339383-74339699(-)$1	316	71	79	15.6406
ucuuuucu	chrX:106184467-106184725(-)$1	258	62	70	16.7343
CCUUUGCU	chr14:23446701-23446958(-)$1	257	32	40	15.9531
CCUUUUCU	chr6:30692683-30692940(+)$1	257	237	245	19.7812
CUUUUUCU	chr4:89628905-89629192(+)$1	287	86	94	15.6406
GCUUUUCU	chr14:23446623-23446901(-)$1	278	27	35	16.1093
CCUUUUCC	chr11:2159659-2159863(-)$1	204	150	158	15.2500
CUUUUUCU	chr19:48958407-48958671(+)$1	264	69	77	15.6406
CCUUUUCU	chr20:34820054-34820317(+)$1	263	92	100	19.7812
ccuuuccu	chrX:122735096-122735351(-)$1	255	106	114	16.1093
UCUUUUCU	chr19:54378121-54378366(+)$1	245	107	115	16.7343
ACUUUUCU	chr3:113440389-113440616(-)$1	227	89	97	16.1875
CCUCUUCU	chr22:25589448-25589747(+)$1	299	152	160	15.8750
ccuuuccu	chr1:156045363-156045641(-)$1	278	32	40	16.1093
CUUUUUCU	chr17:36891249-36891529(-)$1	280	103	111	15.6406
CCUCUUCU	chr16:70190839-70191078(+)$1	239	29	37	15.8750
CCUCUUCU	chr19:41829091-41829392(+)$1	301	118	126	15.8750
CCUUUUCC	chr12:123776161-123776444(-)$1	283	130	138	15.2500
cuuuuucu	chr5:112227542-112227835(-)$1	293	87	95	15.6406
CCUUUUUU	chr6:132214795-132215053(+)$1	258	64	72	15.2500
CCUGUUCU	chr6:7282268-7282540(-)$1	272	30	38	15.7968
CCUUUUCU	chr14:81941011-81941265(-)$1	254	133	141	19.7812
CCUUCUCU	chr11:64532544-64532802(-)$1	258	102	110	15.4843
ccuuuucu	chr13:52731257-52731527(-)$1	270	104	112	19.7812
UCUUUUCU	chr11:6504560-6504830(+)$1	270	3	11	16.7343
ucuuuucu	chr12:77416274-77416548(-)$1	274	132	140	16.7343
CCUGUUCU	chr7:100164222-100164491(+)$1	269	99	107	15.7968
ccucuucu	chr17:30808494-30808753(+)$1	259	85	93	15.8750
UCUUUUCU	chr20:30781612-30781904(-)$1	292	105	113	16.7343
CCUUUUCU	chr10:102122177-102122397(+)$1	220	83	91	19.7812
CCUUUUCU	chr7:4306806-4307105(+)$1	299	170	178	19.7812
CCUUUUUU	chr11:58386403-58386658(+)$1	255	22	30	15.2500
CCUUUUUU	chr20:251449-251768(-)$1	319	231	239	15.2500
UCUUUUCU	chr9:86584396-86584707(-)$1	311	100	108	16.7343
CCUUUCCU	chr16:81412290-81412561(+)$1	271	110	118	16.1093
ccuuuucu	chr11:101827160-101827546(+)$1	386	129	137	19.7812
acuuuucu	chr2:149449579-149449975(+)$1	396	221	229	16.1875
UCUUUUCU	chr15:96874014-96874292(+)$1	278	5	13	16.7343
CCUUUGCU	chr14:21463115-21463376(+)$1	261	1	9	15.9531
CCUUUCCU	chr15:65809086-65809350(-)$1	264	58	66	16.1093
CCUUAUCU	chr17:27207230-27207533(-)$1	303	52	60	15.4062
CCCUUUCU	chrX:48328011-48328279(-)$1	268	38	46	14.9375
GCUUUUCU	chr6:52367591-52367890(-)$1	299	161	169	16.1093
acuuuucu	chr5:177655063-177655320(-)$1	257	97	105	16.1875
CAUUUUCU	chr3:196771259-196771566(-)$1	307	109	117	15.3281
ccuuuacu	chr2:176791579-176791816(-)$1	237	126	134	15.7187
UCUUUUCU	chr12:65089803-65090045(+)$1	242	126	134	16.7343
ccucuucu	chr3:188596933-188597180(+)$1	247	138	146	15.8750
CCUGUUCU	chr15:78833871-78834145(+)$1	274	10	18	15.7968
CCUUUUCC	chr2:85548132-85548374(-)$1	242	118	126	15.2500
CCUUAUCU	chr6:41001351-41001595(-)$1	244	53	61	15.4062
CCUGUUCU	chr6:7282340-7282587(-)$1	247	77	85	15.7968
CCUUCUCU	chr20:35090722-35090957(+)$1	235	169	177	15.4843
UCUUUUCU	chr14:23768626-23768890(-)$1	264	160	168	16.7343
ccuugucu	chr1:15901532-15901839(-)$1	307	280	288	15.3281
CCUUUGCU	chr12:66218417-66218697(+)$1	280	32	40	15.9531
CCUUUGCU	chr8:101931053-101931349(-)$1	296	20	28	15.9531

#otherMatches

#Struct PSSM
^^^^^^^^	chr6:36198784-36199078(+)$1	294	144	152	19.7812
::::::::	chr4:114374722-114375030(-)$1	308	88	96	16.7343
::::::::	chrX:122735240-122735498(-)$1	258	21	29	19.7812
::::::::	chr14:24778660-24778912(+)$1	252	94	102	16.1093
ee"""bbq	chr3:120047451-120047701(-)$1	250	129	137	19.7812
iiiiiii2	chr17:41008914-41009279(+)$1	365	101	109	16.1093
GGGGGBBE	chr6:30875934-30876217(+)$1	283	66	74	15.4843
::::::::	chr16:74339383-74339699(-)$1	316	71	79	15.6406
:GGGGGGG	chrX:106184467-106184725(-)$1	258	62	70	16.7343
::::::::	chr14:23446701-23446958(-)$1	257	32	40	15.9531
::::::::	chr6:30692683-30692940(+)$1	257	237	245	19.7812
^^^^^^^^	chr4:89628905-89629192(+)$1	287	86	94	15.6406
c::::::C	chr14:23446623-23446901(-)$1	278	27	35	16.1093
:ffffffo	chr11:2159659-2159863(-)$1	204	150	158	15.2500
>>>>>>>>	chr19:48958407-48958671(+)$1	264	69	77	15.6406
::::::::	chr20:34820054-34820317(+)$1	263	92	100	19.7812
^^^^^^^^	chrX:122735096-122735351(-)$1	255	106	114	16.1093
^^^^^^^^	chr19:54378121-54378366(+)$1	245	107	115	16.7343
:ddddooo	chr3:113440389-113440616(-)$1	227	89	97	16.1875
^^^^^^^^	chr22:25589448-25589747(+)$1	299	152	160	15.8750
::::::::	chr1:156045363-156045641(-)$1	278	32	40	16.1093
))))))ee	chr17:36891249-36891529(-)$1	280	103	111	15.6406
eeoooooo	chr16:70190839-70191078(+)$1	239	29	37	15.8750
d:::::::	chr19:41829091-41829392(+)$1	301	118	126	15.8750
::::::::	chr12:123776161-123776444(-)$1	283	130	138	15.2500
^^^^^^^^	chr5:112227542-112227835(-)$1	293	87	95	15.6406
FFFF::::	chr6:132214795-132215053(+)$1	258	64	72	15.2500
PCCCMMMM	chr6:7282268-7282540(-)$1	272	30	38	15.7968
^^^^^^^^	chr14:81941011-81941265(-)$1	254	133	141	19.7812
cc%%%%%%	chr11:64532544-64532802(-)$1	258	102	110	15.4843
::::::::	chr13:52731257-52731527(-)$1	270	104	112	19.7812
::::::::	chr11:6504560-6504830(+)$1	270	3	11	16.7343
::::::::	chr12:77416274-77416548(-)$1	274	132	140	16.7343
::::::::	chr7:100164222-100164491(+)$1	269	99	107	15.7968
2bb22ccc	chr17:30808494-30808753(+)$1	259	85	93	15.8750
::::::::	chr20:30781612-30781904(-)$1	292	105	113	16.7343
=(((((((	chr10:102122177-102122397(+)$1	220	83	91	19.7812
^^^^^^^^	chr7:4306806-4307105(+)$1	299	170	178	19.7812
JJJJJJJL	chr11:58386403-58386658(+)$1	255	22	30	15.2500
^^^^^^^^	chr20:251449-251768(-)$1	319	231	239	15.2500
hhhh::::	chr9:86584396-86584707(-)$1	311	100	108	16.7343
::::::::	chr16:81412290-81412561(+)$1	271	110	118	16.1093
::::::::	chr11:101827160-101827546(+)$1	386	129	137	19.7812
ccyyyyyy	chr2:149449579-149449975(+)$1	396	221	229	16.1875
E:::::::	chr15:96874014-96874292(+)$1	278	5	13	16.7343
DDDKKCCC	chr14:21463115-21463376(+)$1	261	1	9	15.9531
ssssffff	chr15:65809086-65809350(-)$1	264	58	66	16.1093
ddddoooo	chr17:27207230-27207533(-)$1	303	52	60	15.4062
::::::::	chrX:48328011-48328279(-)$1	268	38	46	14.9375
cc"""eee	chr6:52367591-52367890(-)$1	299	161	169	16.1093
:::::::b	chr5:177655063-177655320(-)$1	257	97	105	16.1875
ff''''''	chr3:196771259-196771566(-)$1	307	109	117	15.3281
ppppbb22	chr2:176791579-176791816(-)$1	237	126	134	15.7187
F::ddddo	chr12:65089803-65090045(+)$1	242	126	134	16.7343
::::::::	chr3:188596933-188597180(+)$1	247	138	146	15.8750
::DDDD::	chr15:78833871-78834145(+)$1	274	10	18	15.7968
>>>>>>>>	chr2:85548132-85548374(-)$1	242	118	126	15.2500
b:::::::	chr6:41001351-41001595(-)$1	244	53	61	15.4062
::::::::	chr6:7282340-7282587(-)$1	247	77	85	15.7968
^^^^^^^^	chr20:35090722-35090957(+)$1	235	169	177	15.4843
::::::::	chr14:23768626-23768890(-)$1	264	160	168	16.7343
e22dddd5	chr1:15901532-15901839(-)$1	307	280	288	15.3281
^^^^^^^^	chr12:66218417-66218697(+)$1	280	32	40	15.9531
:::::BBK	chr8:101931053-101931349(-)$1	296	20	28	15.9531

#DB
........	chr6:36198784-36199078(+)$1	1	144	152	19.7812
........	chr4:114374722-114375030(-)$1	1	88	96	16.7343
........	chrX:122735240-122735498(-)$1	1	21	29	19.7812
........	chr14:24778660-24778912(+)$1	1	94	102	16.1093
((...((.	chr3:120047451-120047701(-)$1	1	129	137	19.7812
))))))).	chr17:41008914-41009279(+)$1	1	101	109	16.1093
((((((((	chr6:30875934-30876217(+)$1	1	66	74	15.4843
........	chr16:74339383-74339699(-)$1	1	71	79	15.6406
.(((((((	chrX:106184467-106184725(-)$1	1	62	70	16.7343
........	chr14:23446701-23446958(-)$1	1	32	40	15.9531
........	chr6:30692683-30692940(+)$1	1	237	245	19.7812
........	chr4:89628905-89629192(+)$1	1	86	94	15.6406
)......(	chr14:23446623-23446901(-)$1	1	27	35	16.1093
.((((((.	chr11:2159659-2159863(-)$1	1	150	158	15.2500
........	chr19:48958407-48958671(+)$1	1	69	77	15.6406
........	chr20:34820054-34820317(+)$1	1	92	100	19.7812
........	chrX:122735096-122735351(-)$1	1	106	114	16.1093
........	chr19:54378121-54378366(+)$1	1	107	115	16.7343
.((((...	chr3:113440389-113440616(-)$1	1	89	97	16.1875
........	chr22:25589448-25589747(+)$1	1	152	160	15.8750
........	chr1:156045363-156045641(-)$1	1	32	40	16.1093
......((	chr17:36891249-36891529(-)$1	1	103	111	15.6406
((......	chr16:70190839-70191078(+)$1	1	29	37	15.8750
).......	chr19:41829091-41829392(+)$1	1	118	126	15.8750
........	chr12:123776161-123776444(-)$1	1	130	138	15.2500
........	chr5:112227542-112227835(-)$1	1	87	95	15.6406
))))....	chr6:132214795-132215053(+)$1	1	64	72	15.2500
.(((....	chr6:7282268-7282540(-)$1	1	30	38	15.7968
........	chr14:81941011-81941265(-)$1	1	133	141	19.7812
((......	chr11:64532544-64532802(-)$1	1	102	110	15.4843
........	chr13:52731257-52731527(-)$1	1	104	112	19.7812
........	chr11:6504560-6504830(+)$1	1	3	11	16.7343
........	chr12:77416274-77416548(-)$1	1	132	140	16.7343
........	chr7:100164222-100164491(+)$1	1	99	107	15.7968
.))..)))	chr17:30808494-30808753(+)$1	1	85	93	15.8750
........	chr20:30781612-30781904(-)$1	1	105	113	16.7343
(.......	chr10:102122177-102122397(+)$1	1	83	91	19.7812
........	chr7:4306806-4307105(+)$1	1	170	178	19.7812
(((((((.	chr11:58386403-58386658(+)$1	1	22	30	15.2500
........	chr20:251449-251768(-)$1	1	231	239	15.2500
))))....	chr9:86584396-86584707(-)$1	1	100	108	16.7343
........	chr16:81412290-81412561(+)$1	1	110	118	16.1093
........	chr11:101827160-101827546(+)$1	1	129	137	19.7812
((......	chr2:149449579-149449975(+)$1	1	221	229	16.1875
(.......	chr15:96874014-96874292(+)$1	1	5	13	16.7343
(((..(((	chr14:21463115-21463376(+)$1	1	1	9	15.9531
....))))	chr15:65809086-65809350(-)$1	1	58	66	16.1093
((((....	chr17:27207230-27207533(-)$1	1	52	60	15.4062
........	chrX:48328011-48328279(-)$1	1	38	46	14.9375
((...(((	chr6:52367591-52367890(-)$1	1	161	169	16.1093
.......(	chr5:177655063-177655320(-)$1	1	97	105	16.1875
((......	chr3:196771259-196771566(-)$1	1	109	117	15.3281
....))..	chr2:176791579-176791816(-)$1	1	126	134	15.7187
(..((((.	chr12:65089803-65090045(+)$1	1	126	134	16.7343
........	chr3:188596933-188597180(+)$1	1	138	146	15.8750
..((((..	chr15:78833871-78834145(+)$1	1	10	18	15.7968
........	chr2:85548132-85548374(-)$1	1	118	126	15.2500
).......	chr6:41001351-41001595(-)$1	1	53	61	15.4062
........	chr6:7282340-7282587(-)$1	1	77	85	15.7968
........	chr20:35090722-35090957(+)$1	1	169	177	15.4843
........	chr14:23768626-23768890(-)$1	1	160	168	16.7343
)..)))).	chr1:15901532-15901839(-)$1	1	280	288	15.3281
........	chr12:66218417-66218697(+)$1	1	32	40	15.9531
.....((.	chr8:101931053-101931349(-)$1	1	20	28	15.9531

#PSSM
C : 0.57	c : 0.18	U : 0.10	u : 0.04	G : 0.03	a : 0.03	A : 0.01	
C : 0.67	c : 0.23	U : 0.04	u : 0.03	A : 0.01	
U : 0.71	u : 0.26	C : 0.01	
U : 0.62	u : 0.23	G : 0.06	C : 0.04	c : 0.03	
U : 0.67	u : 0.23	C : 0.03	A : 0.03	c : 0.01	g : 0.01	
U : 0.62	u : 0.20	G : 0.06	C : 0.04	c : 0.04	a : 0.01	
C : 0.68	c : 0.26	U : 0.04	
U : 0.68	u : 0.26	C : 0.04	

#score	1057.25
#seq	64
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_transcript_m3_run2.nuc.txt

#NT
uuc	chr7:73109793-73110138(+)$1	345	2	5	9.0000
UUC	chr12:26715934-26716215(-)$1	281	30	33	9.0000
UUC	chrX:132728975-132729204(-)$1	229	33	36	9.0000
UUC	chr14:55058859-55059143(+)$1	284	15	18	9.0000
UUC	chr1:27024252-27024504(+)$1	252	6	9	9.0000
uuc	chr18:6257310-6257575(-)$1	265	31	34	9.0000
UUC	chr5:59715756-59716060(-)$1	304	5	8	9.0000
UUC	chr11:57585398-57585684(+)$1	286	12	15	9.0000
uuc	chr6:148009032-148009286(+)$1	254	6	9	9.0000
UUC	chr6:3394148-3394383(-)$1	235	22	25	9.0000
UUC	chr13:50774419-50774713(+)$1	294	2	5	9.0000
uuc	chr3:107331128-107331455(+)$1	327	13	16	9.0000
UUC	chr5:73159196-73159532(+)$1	336	11	14	9.0000
uuc	chr17:26991783-26992028(+)$1	245	20	23	9.0000
UUC	chr9:139707829-139708107(+)$1	278	34	37	9.0000
uuc	chr16:78599274-78599542(+)$1	268	3	6	9.0000
uuc	chr13:96393701-96393987(+)$1	286	37	40	9.0000
UUC	chr7:155502512-155502833(+)$1	321	40	43	9.0000
uuc	chr2:180075615-180075915(-)$1	300	10	13	9.0000
uuc	chr20:5117703-5117946(+)$1	243	59	62	9.0000
uuc	chr1:45645423-45645717(-)$1	294	34	37	9.0000
uuc	chr15:56500011-56500274(-)$1	263	44	47	9.0000
uuc	chr7:92445522-92445767(-)$1	245	2	5	9.0000
uuc	chr3:141799649-141799925(-)$1	276	133	136	9.0000
UUC	chr14:76117658-76117919(-)$1	261	47	50	9.0000
uuc	chr4:69804012-69804309(-)$1	297	46	49	9.0000
uuc	chr8:141820862-141821139(-)$1	277	44	47	9.0000
UUC	chr7:92255827-92256157(-)$1	330	29	32	9.0000
uuc	chr2:166792553-166792838(-)$1	285	14	17	9.0000
UUC	chr20:25513762-25514019(-)$1	257	25	28	9.0000
UUC	chr20:48724656-48724929(-)$1	273	17	20	9.0000
UUC	chr10:5817502-5817736(-)$1	234	28	31	9.0000
uuc	chr11:70890785-70891098(-)$1	313	128	131	9.0000
uuc	chr7:127003455-127003711(-)$1	256	19	22	9.0000
uuc	chr5:59722904-59723148(-)$1	244	9	12	9.0000
UUC	chr14:35628441-35628772(+)$1	331	68	71	9.0000
UUC	chr2:236506671-236506921(+)$1	250	26	29	9.0000
uuc	chr20:31002454-31002731(+)$1	277	5	8	9.0000
uuc	chr3:17737323-17737591(-)$1	268	22	25	9.0000
UUC	chr8:54885744-54886015(-)$1	271	5	8	9.0000
uuc	chr6:24257622-24257854(-)$1	232	43	46	9.0000
uuc	chr8:17150015-17150274(+)$1	259	35	38	9.0000
uuc	chr21:46937109-46937377(-)$1	268	160	163	9.0000
UUC	chr7:35677273-35677531(-)$1	258	12	15	9.0000
UUC	chr7:127368741-127369015(+)$1	274	2	5	9.0000
uuc	chr2:63035377-63035629(+)$1	252	7	10	9.0000
UUC	chr1:55349494-55349757(-)$1	263	29	32	9.0000
uuc	chr19:23535108-23535371(-)$1	263	24	27	9.0000
UUC	chr2:165576829-165577107(-)$1	278	116	119	9.0000
uuc	chr4:144269963-144270249(+)$1	286	6	9	9.0000
UUC	chr9:139707919-139708157(+)$1	238	31	34	9.0000
uuc	chrX:132706836-132707098(-)$1	262	26	29	9.0000
UUC	chr7:127368951-127369211(+)$1	260	27	30	9.0000
uuc	chr11:62566392-62566665(-)$1	273	2	5	9.0000
UUC	chr3:188170807-188171096(+)$1	289	15	18	9.0000
uuc	chr3:17735006-17735265(-)$1	259	12	15	9.0000
uuc	chr7:34760453-34760695(-)$1	242	11	14	9.0000
UUC	chr17:78627211-78627560(+)$1	349	50	53	9.0000
uuc	chr20:30982828-30983153(+)$1	325	35	38	9.0000
UUC	chr6:45209330-45209642(-)$1	312	1	4	9.0000
UUC	chr13:103281068-103281335(+)$1	267	56	59	9.0000
uuc	chr13:34412690-34412910(+)$1	220	1	4	9.0000
uuc	chr19:54378125-54378371(+)$1	246	0	3	9.0000
uuc	chr1:234611951-234612215(-)$1	264	19	22	9.0000
UUC	chr16:87377911-87378207(-)$1	296	65	68	9.0000
UUC	chr11:68260272-68260611(+)$1	339	5	8	9.0000
uuc	chr13:96660298-96660577(-)$1	279	1	4	9.0000
UUC	chr2:45764879-45765147(-)$1	268	75	78	9.0000
uuc	chr11:17879451-17879699(-)$1	248	9	12	9.0000
UUC	chr2:102456476-102456745(+)$1	269	0	3	9.0000
UUC	chr20:4931804-4932097(-)$1	293	30	33	9.0000
uuc	chrX:119350102-119350362(-)$1	260	58	61	9.0000
uuc	chr6:108264712-108264967(-)$1	255	19	22	9.0000
uuc	chrX:132756370-132756595(-)$1	225	56	59	9.0000
uuc	chr14:36111119-36111391(-)$1	272	22	25	9.0000
uuc	chr15:25252767-25253017(+)$1	250	35	38	9.0000
UUC	chr17:61859940-61860218(+)$1	278	7	10	9.0000
UUC	chrY:2720197-2720454(+)$1	257	50	53	9.0000
UUC	chr6:4797003-4797331(+)$1	328	21	24	9.0000
uuc	chr12:56308364-56308636(-)$1	272	51	54	9.0000
UUC	chr19:7515133-7515434(+)$1	301	15	18	9.0000
uuc	chr11:72690628-72690876(-)$1	248	10	13	9.0000
UUC	chr2:85548099-85548330(-)$1	231	10	13	9.0000
uuc	chr3:41249445-41249722(+)$1	277	7	10	9.0000
UUC	chr17:599287-599613(-)$1	326	19	22	9.0000
uuc	chr2:223803720-223803929(+)$1	209	8	11	9.0000
uuc	chr8:129064226-129064569(+)$1	343	104	107	9.0000
UUC	chr22:41489386-41489701(+)$1	315	56	59	9.0000
uuc	chr4:2000378-2000649(-)$1	271	23	26	9.0000
uuc	chr7:157832015-157832265(-)$1	250	19	22	9.0000
uuc	chr2:39633198-39633446(-)$1	248	11	14	9.0000
uuc	chr22:28937213-28937540(-)$1	327	13	16	9.0000
UUC	chr7:92289745-92289962(-)$1	217	38	41	9.0000
uuc	chr11:102286815-102287116(-)$1	301	9	12	9.0000
uuc	chr9:136593937-136594269(-)$1	332	60	63	9.0000
uuc	chr16:10545124-10545415(+)$1	291	37	40	9.0000
uuc	chr22:29017396-29017634(-)$1	238	154	157	9.0000

#otherMatches

#Struct PSSM
cdd	chr6:168304800-168305041(+)$1	241	57	60	9.0000
:::	chr7:73109793-73110138(+)$1	345	2	5	9.0000
:::	chr12:26715934-26716215(-)$1	281	30	33	9.0000
777	chrX:132728975-132729204(-)$1	229	33	36	9.0000
ccc	chr14:55058859-55059143(+)$1	284	15	18	9.0000
$$$	chr1:27024252-27024504(+)$1	252	6	9	9.0000
!!c	chr18:6257310-6257575(-)$1	265	31	34	9.0000
d!!	chr5:59715756-59716060(-)$1	304	5	8	9.0000
ffd	chr11:57585398-57585684(+)$1	286	12	15	9.0000
ddd	chr6:148009032-148009286(+)$1	254	6	9	9.0000
KKA	chr6:3394148-3394383(-)$1	235	22	25	9.0000
:::	chr13:50774419-50774713(+)$1	294	2	5	9.0000
FFF	chr3:107331128-107331455(+)$1	327	13	16	9.0000
EEE	chr5:73159196-73159532(+)$1	336	11	14	9.0000
:::	chr17:26991783-26992028(+)$1	245	20	23	9.0000
c[c	chr9:139707829-139708107(+)$1	278	34	37	9.0000
:::	chr16:78599274-78599542(+)$1	268	3	6	9.0000
777	chr13:96393701-96393987(+)$1	286	37	40	9.0000
ccc	chr7:155502512-155502833(+)$1	321	40	43	9.0000
==c	chr2:180075615-180075915(-)$1	300	10	13	9.0000
hhh	chr20:5117703-5117946(+)$1	243	59	62	9.0000
:::	chr1:45645423-45645717(-)$1	294	34	37	9.0000
f$$	chr15:56500011-56500274(-)$1	263	44	47	9.0000
:::	chr7:92445522-92445767(-)$1	245	2	5	9.0000
ddd	chr3:141799649-141799925(-)$1	276	133	136	9.0000
ooo	chr14:76117658-76117919(-)$1	261	47	50	9.0000
qqq	chr4:69804012-69804309(-)$1	297	46	49	9.0000
:dd	chr8:141820862-141821139(-)$1	277	44	47	9.0000
:::	chr7:92255827-92256157(-)$1	330	29	32	9.0000
nnn	chr2:166792553-166792838(-)$1	285	14	17	9.0000
EEE	chr20:25513762-25514019(-)$1	257	25	28	9.0000
OOB	chr20:48724656-48724929(-)$1	273	17	20	9.0000
)))	chr10:5817502-5817736(-)$1	234	28	31	9.0000
fff	chr11:70890785-70891098(-)$1	313	128	131	9.0000
b[c	chr7:127003455-127003711(-)$1	256	19	22	9.0000
ppp	chr5:59722904-59723148(-)$1	244	9	12	9.0000
hh^	chr14:35628441-35628772(+)$1	331	68	71	9.0000
:::	chr2:236506671-236506921(+)$1	250	26	29	9.0000
::e	chr20:31002454-31002731(+)$1	277	5	8	9.0000
lee	chr3:17737323-17737591(-)$1	268	22	25	9.0000
&&&	chr8:54885744-54886015(-)$1	271	5	8	9.0000
[cc	chr6:24257622-24257854(-)$1	232	43	46	9.0000
$$$	chr8:17150015-17150274(+)$1	259	35	38	9.0000
HLL	chr21:46937109-46937377(-)$1	268	160	163	9.0000
^^^	chr7:35677273-35677531(-)$1	258	12	15	9.0000
FFF	chr7:127368741-127369015(+)$1	274	2	5	9.0000
nnc	chr2:63035377-63035629(+)$1	252	7	10	9.0000
KDD	chr1:55349494-55349757(-)$1	263	29	32	9.0000
:::	chr19:23535108-23535371(-)$1	263	24	27	9.0000
yyy	chr2:165576829-165577107(-)$1	278	116	119	9.0000
eee	chr4:144269963-144270249(+)$1	286	6	9	9.0000
hhh	chr9:139707919-139708157(+)$1	238	31	34	9.0000
hhh	chrX:132706836-132707098(-)$1	262	26	29	9.0000
[cc	chr7:127368951-127369211(+)$1	260	27	30	9.0000
:::	chr11:62566392-62566665(-)$1	273	2	5	9.0000
dmm	chr3:188170807-188171096(+)$1	289	15	18	9.0000
:::	chr3:17735006-17735265(-)$1	259	12	15	9.0000
:::	chr7:34760453-34760695(-)$1	242	11	14	9.0000
===	chr17:78627211-78627560(+)$1	349	50	53	9.0000
:::	chr20:30982828-30983153(+)$1	325	35	38	9.0000
:EE	chr6:45209330-45209642(-)$1	312	1	4	9.0000
eee	chr13:103281068-103281335(+)$1	267	56	59	9.0000
:::	chr13:34412690-34412910(+)$1	220	1	4	9.0000
:::	chr19:54378125-54378371(+)$1	246	0	3	9.0000
ooo	chr1:234611951-234612215(-)$1	264	19	22	9.0000
cc]	chr16:87377911-87378207(-)$1	296	65	68	9.0000
:::	chr11:68260272-68260611(+)$1	339	5	8	9.0000
:::	chr13:96660298-96660577(-)$1	279	1	4	9.0000
:::	chr2:45764879-45765147(-)$1	268	75	78	9.0000
d!!	chr11:17879451-17879699(-)$1	248	9	12	9.0000
:::	chr2:102456476-102456745(+)$1	269	0	3	9.0000
eee	chr20:4931804-4932097(-)$1	293	30	33	9.0000
FFF	chrX:119350102-119350362(-)$1	260	58	61	9.0000
rrr	chr6:108264712-108264967(-)$1	255	19	22	9.0000
dd3	chrX:132756370-132756595(-)$1	225	56	59	9.0000
vvv	chr14:36111119-36111391(-)$1	272	22	25	9.0000
JJJ	chr15:25252767-25253017(+)$1	250	35	38	9.0000
:::	chr17:61859940-61860218(+)$1	278	7	10	9.0000
:::	chrY:2720197-2720454(+)$1	257	50	53	9.0000
###	chr6:4797003-4797331(+)$1	328	21	24	9.0000
OII	chr12:56308364-56308636(-)$1	272	51	54	9.0000
ee!	chr19:7515133-7515434(+)$1	301	15	18	9.0000
g!!	chr11:72690628-72690876(-)$1	248	10	13	9.0000
&&&	chr2:85548099-85548330(-)$1	231	10	13	9.0000
:::	chr3:41249445-41249722(+)$1	277	7	10	9.0000
[bb	chr17:599287-599613(-)$1	326	19	22	9.0000
:::	chr2:223803720-223803929(+)$1	209	8	11	9.0000
fff	chr8:129064226-129064569(+)$1	343	104	107	9.0000
>>>	chr22:41489386-41489701(+)$1	315	56	59	9.0000
KKB	chr4:2000378-2000649(-)$1	271	23	26	9.0000
GGG	chr7:157832015-157832265(-)$1	250	19	22	9.0000
(((	chr2:39633198-39633446(-)$1	248	11	14	9.0000
MMD	chr22:28937213-28937540(-)$1	327	13	16	9.0000
EEE	chr7:92289745-92289962(-)$1	217	38	41	9.0000
EEK	chr11:102286815-102287116(-)$1	301	9	12	9.0000
:::	chr9:136593937-136594269(-)$1	332	60	63	9.0000
:::	chr16:10545124-10545415(+)$1	291	37	40	9.0000
fff	chr22:29017396-29017634(-)$1	238	154	157	9.0000

#DB
)((	chr6:168304800-168305041(+)$1	1	57	60	9.0000
...	chr7:73109793-73110138(+)$1	1	2	5	9.0000
...	chr12:26715934-26716215(-)$1	1	30	33	9.0000
...	chrX:132728975-132729204(-)$1	1	33	36	9.0000
(((	chr14:55058859-55059143(+)$1	1	15	18	9.0000
...	chr1:27024252-27024504(+)$1	1	6	9	9.0000
..(	chr18:6257310-6257575(-)$1	1	31	34	9.0000
(..	chr5:59715756-59716060(-)$1	1	5	8	9.0000
(((	chr11:57585398-57585684(+)$1	1	12	15	9.0000
(((	chr6:148009032-148009286(+)$1	1	6	9	9.0000
..(	chr6:3394148-3394383(-)$1	1	22	25	9.0000
...	chr13:50774419-50774713(+)$1	1	2	5	9.0000
(((	chr3:107331128-107331455(+)$1	1	13	16	9.0000
(((	chr5:73159196-73159532(+)$1	1	11	14	9.0000
...	chr17:26991783-26992028(+)$1	1	20	23	9.0000
(.(	chr9:139707829-139708107(+)$1	1	34	37	9.0000
...	chr16:78599274-78599542(+)$1	1	3	6	9.0000
...	chr13:96393701-96393987(+)$1	1	37	40	9.0000
)))	chr7:155502512-155502833(+)$1	1	40	43	9.0000
(((	chr2:180075615-180075915(-)$1	1	10	13	9.0000
)))	chr20:5117703-5117946(+)$1	1	59	62	9.0000
...	chr1:45645423-45645717(-)$1	1	34	37	9.0000
(..	chr15:56500011-56500274(-)$1	1	44	47	9.0000
...	chr7:92445522-92445767(-)$1	1	2	5	9.0000
)))	chr3:141799649-141799925(-)$1	1	133	136	9.0000
...	chr14:76117658-76117919(-)$1	1	47	50	9.0000
...	chr4:69804012-69804309(-)$1	1	46	49	9.0000
.((	chr8:141820862-141821139(-)$1	1	44	47	9.0000
...	chr7:92255827-92256157(-)$1	1	29	32	9.0000
...	chr2:166792553-166792838(-)$1	1	14	17	9.0000
(((	chr20:25513762-25514019(-)$1	1	25	28	9.0000
..(	chr20:48724656-48724929(-)$1	1	17	20	9.0000
...	chr10:5817502-5817736(-)$1	1	28	31	9.0000
)))	chr11:70890785-70891098(-)$1	1	128	131	9.0000
(.(	chr7:127003455-127003711(-)$1	1	19	22	9.0000
...	chr5:59722904-59723148(-)$1	1	9	12	9.0000
((.	chr14:35628441-35628772(+)$1	1	68	71	9.0000
...	chr2:236506671-236506921(+)$1	1	26	29	9.0000
..(	chr20:31002454-31002731(+)$1	1	5	8	9.0000
.))	chr3:17737323-17737591(-)$1	1	22	25	9.0000
...	chr8:54885744-54886015(-)$1	1	5	8	9.0000
.((	chr6:24257622-24257854(-)$1	1	43	46	9.0000
...	chr8:17150015-17150274(+)$1	1	35	38	9.0000
(..	chr21:46937109-46937377(-)$1	1	160	163	9.0000
...	chr7:35677273-35677531(-)$1	1	12	15	9.0000
(((	chr7:127368741-127369015(+)$1	1	2	5	9.0000
..)	chr2:63035377-63035629(+)$1	1	7	10	9.0000
.((	chr1:55349494-55349757(-)$1	1	29	32	9.0000
...	chr19:23535108-23535371(-)$1	1	24	27	9.0000
...	chr2:165576829-165577107(-)$1	1	116	119	9.0000
(((	chr4:144269963-144270249(+)$1	1	6	9	9.0000
)))	chr9:139707919-139708157(+)$1	1	31	34	9.0000
(((	chrX:132706836-132707098(-)$1	1	26	29	9.0000
.((	chr7:127368951-127369211(+)$1	1	27	30	9.0000
...	chr11:62566392-62566665(-)$1	1	2	5	9.0000
(..	chr3:188170807-188171096(+)$1	1	15	18	9.0000
...	chr3:17735006-17735265(-)$1	1	12	15	9.0000
...	chr7:34760453-34760695(-)$1	1	11	14	9.0000
(((	chr17:78627211-78627560(+)$1	1	50	53	9.0000
...	chr20:30982828-30983153(+)$1	1	35	38	9.0000
.((	chr6:45209330-45209642(-)$1	1	1	4	9.0000
)))	chr13:103281068-103281335(+)$1	1	56	59	9.0000
...	chr13:34412690-34412910(+)$1	1	1	4	9.0000
...	chr19:54378125-54378371(+)$1	1	0	3	9.0000
...	chr1:234611951-234612215(-)$1	1	19	22	9.0000
)).	chr16:87377911-87378207(-)$1	1	65	68	9.0000
...	chr11:68260272-68260611(+)$1	1	5	8	9.0000
...	chr13:96660298-96660577(-)$1	1	1	4	9.0000
...	chr2:45764879-45765147(-)$1	1	75	78	9.0000
(..	chr11:17879451-17879699(-)$1	1	9	12	9.0000
...	chr2:102456476-102456745(+)$1	1	0	3	9.0000
(((	chr20:4931804-4932097(-)$1	1	30	33	9.0000
(((	chrX:119350102-119350362(-)$1	1	58	61	9.0000
...	chr6:108264712-108264967(-)$1	1	19	22	9.0000
)).	chrX:132756370-132756595(-)$1	1	56	59	9.0000
...	chr14:36111119-36111391(-)$1	1	22	25	9.0000
(((	chr15:25252767-25253017(+)$1	1	35	38	9.0000
...	chr17:61859940-61860218(+)$1	1	7	10	9.0000
...	chrY:2720197-2720454(+)$1	1	50	53	9.0000
...	chr6:4797003-4797331(+)$1	1	21	24	9.0000
.((	chr12:56308364-56308636(-)$1	1	51	54	9.0000
((.	chr19:7515133-7515434(+)$1	1	15	18	9.0000
(..	chr11:72690628-72690876(-)$1	1	10	13	9.0000
...	chr2:85548099-85548330(-)$1	1	10	13	9.0000
...	chr3:41249445-41249722(+)$1	1	7	10	9.0000
.((	chr17:599287-599613(-)$1	1	19	22	9.0000
...	chr2:223803720-223803929(+)$1	1	8	11	9.0000
(((	chr8:129064226-129064569(+)$1	1	104	107	9.0000
...	chr22:41489386-41489701(+)$1	1	56	59	9.0000
..(	chr4:2000378-2000649(-)$1	1	23	26	9.0000
(((	chr7:157832015-157832265(-)$1	1	19	22	9.0000
...	chr2:39633198-39633446(-)$1	1	11	14	9.0000
..(	chr22:28937213-28937540(-)$1	1	13	16	9.0000
(((	chr7:92289745-92289962(-)$1	1	38	41	9.0000
((.	chr11:102286815-102287116(-)$1	1	9	12	9.0000
...	chr9:136593937-136594269(-)$1	1	60	63	9.0000
...	chr16:10545124-10545415(+)$1	1	37	40	9.0000
(((	chr22:29017396-29017634(-)$1	1	154	157	9.0000

#PSSM
u : 0.57	U : 0.42	
u : 0.57	U : 0.42	
c : 0.57	C : 0.42	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_transcript_m2_run2.nuc.txt

#NT
cauacauacauaaauacauccaca	chr12:49976532-49976789(+)$1	257	49	73	32.0000
auuacacacacacacacacacaca	chr7:128498605-128498862(+)$1	257	22	46	32.9090
cauacacgcucauacacacucaua	chr16:4718313-4718540(+)$1	227	109	133	30.0000
cacacauucacacucacgugcaca	chr7:5509112-5509364(-)$1	252	204	228	33.7272
cacacagacacccacacaugcaca	chr16:46949141-46949372(+)$1	231	109	133	37.5454
cauacauccacccacccacucauc	chr19:10488374-10488613(-)$1	239	109	133	32.6363
UAUUCAUGcacacacacauacaca	chr18:75697144-75697349(-)$1	205	153	177	38.0909
cacacaugcacacacacacacacg	chr8:48422405-48422685(+)$1	280	67	91	41.0000
cauacgcacacccacacaggcacc	chr2:239982886-239983160(-)$1	274	2	26	30.8181
cauccauccacccacccacccaCC	chr2:241448059-241448293(-)$1	234	12	36	34.0000
cauccauucacacauauaugcaca	chr3:129039829-129040109(+)$1	280	75	99	32.7272
cacacaugcacacaaacacacaca	chr18:75696709-75696926(-)$1	217	22	46	40.1818
cacacauggacacacgcucacaca	chr21:46949500-46949732(-)$1	232	201	225	32.7272
cauccauguauacacacauucaua	chr16:11557200-11557420(-)$1	220	38	62	31.7272
cauauauauacacaCACACACACA	chr1:87451145-87451382(+)$1	237	82	106	36.7272
cacacguggacacaugcacacaca	chr21:46899129-46899387(+)$1	258	45	69	29.9090
caugcauccacucaugcauccacc	chr14:73267321-73267560(-)$1	239	68	92	28.3636
cauacacgcacacacacaUCUCCA	chr21:46904253-46904482(+)$1	229	25	49	33.2727
cauccauccauccacccauccacc	chr22:50038748-50039000(-)$1	252	25	49	30.3636
cauauauauacauauacacacaca	chr1:230411209-230411433(+)$1	224	12	36	28.8181
cacacggacacacacacacucaca	chr21:46949736-46949978(-)$1	242	125	149	36.5454
aauauaugcacacacacaaauaca	chr12:113755950-113756255(-)$1	305	36	60	30.3636
cacacacacucacgcacaugcaca	chr16:81505608-81505872(+)$1	264	71	95	31.6363
cacucaugcacacacacgcacacu	chr11:68478471-68478824(-)$1	353	2	26	33.7272
cauccauccacccauacauccaca	chr12:133095083-133095388(+)$1	305	241	265	36.0909
cauccaccuacccacacacucacc	chr17:80105139-80105415(-)$1	276	28	52	31.1818
cauacgugcacacacacaucagca	chr1:2209152-2209430(+)$1	278	138	162	32.7272
cacacguucacacacacaggcuca	chr21:46841927-46842199(+)$1	272	91	115	32.3636
cauacaugcacacacacauucaca	chr22:48043294-48043516(+)$1	222	88	112	45.3636
cacucaugcucucacacauacaca	chr6:158291051-158291280(+)$1	229	159	183	34.9090
cauccauccacccacucaucuaca	chr22:49846791-49847000(-)$1	209	80	104	31.8181
cacacggacacacacacacucaca	chr21:46949718-46949936(-)$1	218	83	107	36.5454
cacacaugcacacucacgcucaca	chr16:4740576-4740827(+)$1	251	29	53	35.8181
cauacaugcacacacaugcacaca	chr21:46904149-46904364(+)$1	215	78	102	36.5454
cauccacccauccacucauucacc	chr17:75466052-75466330(+)$1	278	81	105	27.5454
cacacauacauacacacacgaaca	chr6:170167385-170167643(+)$1	258	201	225	34.6363
cauacauauacacaugcauacaca	chr21:46915687-46915930(+)$1	243	183	207	33.9090
cacacaugggcacacacaugcaug	chr22:50004082-50004305(-)$1	223	17	41	28.3636
cauccauccacccacccauucacc	chr19:5000133-5000454(+)$1	321	199	223	34.8181
cacaucuucacauacacauucaca	chr8:140814882-140815219(-)$1	337	19	43	30.6363
CUUACAUGCACGCACACAUGCUCA	chr22:48043477-48043702(+)$1	225	180	204	33.4545
Uauacauacaugcacacauucaca	chr13:114562102-114562377(-)$1	275	10	34	33.4545
cauccauccagucacccauucacc	chr13:114554388-114554607(-)$1	219	39	63	29.8181
cucaugugcucacacacauacaca	chrX:3740721-3740981(-)$1	260	181	205	29.0000
ugccccugcacacacacacacaca	chr3:129235581-129235818(+)$1	237	95	119	29.8181
cauacauucucacacacacuccca	chr12:105064431-105064662(+)$1	231	168	192	35.5454
ccuccaugcacacacacuuccacc	chr22:32025218-32025487(-)$1	269	226	250	31.7272
cauccauccacucacccacccauc	chr16:12475171-12475448(+)$1	277	80	104	29.1818
cacacacgcccccacacacacacc	chr17:78255118-78255340(+)$1	222	7	31	32.8181
cauccauccacugacccauucacc	chr16:87327832-87328207(-)$1	375	224	248	29.6363
CAAACAGGCACACACACAUGCGCA	chr18:75697205-75697427(-)$1	222	184	208	34.2727
cacacauccacacucacacacaca	chr6:169000454-169000798(+)$1	344	170	194	39.0909
cacaccugugcccacacacucaca	chr16:85216616-85216909(+)$1	293	55	79	30.7272
cacacauacacccacacacucuca	chr1:31367254-31367553(-)$1	299	124	148	37.3636

#otherMatches

#Struct PSSM
qqqqhhhhhhhh::::::::::::	chr2:236444548-236444816(+)$1	268	235	259	37.1818
::::::::::::::::::::::::	chr12:49976532-49976789(+)$1	257	49	73	32.0000
::::::::::::::::::::::::	chr7:128498605-128498862(+)$1	257	22	46	32.9090
cc22dddd]eeeee4444ccc000	chr16:4718313-4718540(+)$1	227	109	133	30.0000
cc:::::::::::BB}DDDDZZZD	chr7:5509112-5509364(-)$1	252	204	228	33.7272
ee]eeeee4444bb55555cccbb	chr16:46949141-46949372(+)$1	231	109	133	37.5454
::::::::::::::::::::::::	chr19:10488374-10488613(-)$1	239	109	133	32.6363
:::::cccqqqqqqqqccc:::DD	chr18:75697144-75697349(-)$1	205	153	177	38.0909
vvvvvvdddd::::::::::::::	chr8:48422405-48422685(+)$1	280	67	91	41.0000
::::::::::::::::::cccmmm	chr2:239982886-239983160(-)$1	274	2	26	30.8181
::::::::::::::::::::FFFF	chr2:241448059-241448293(-)$1	234	12	36	34.0000
ddd!!bboooooobb22dddd:::	chr3:129039829-129040109(+)$1	280	75	99	32.7272
ffmmmmffffff::::::::::::	chr18:75696709-75696926(-)$1	217	22	46	40.1818
eemmmmeeeee:::::::::::DD	chr21:46949500-46949732(-)$1	232	201	225	32.7272
:::::iiiiiiiii[dddd[eeee	chr16:11557200-11557420(-)$1	220	38	62	31.7272
ohhhhhhhh:::::::::::::::	chr1:87451145-87451382(+)$1	237	82	106	36.7272
DDD::dddd$$$$$hhhhhhhhtt	chr21:46899129-46899387(+)$1	258	45	69	29.9090
oeeeee7777777ffffff:::::	chr14:73267321-73267560(-)$1	239	68	92	28.3636
ffff333bb:DDDD{DDDDMMMMC	chr21:46904253-46904482(+)$1	229	25	49	33.2727
::::::::::::::::::::::::	chr22:50038748-50039000(-)$1	252	25	49	30.3636
::::::::::::::::::::::::	chr1:230411209-230411433(+)$1	224	12	36	28.8181
::::::::::::::::::::::::	chr21:46949736-46949978(-)$1	242	125	149	36.5454
oooodddd::::::::::::::FF	chr12:113755950-113756255(-)$1	305	36	60	30.3636
hh:::::::::::ffffffmmmmf	chr16:81505608-81505872(+)$1	264	71	95	31.6363
::::::DDDDKKBB::::::::::	chr11:68478471-68478824(-)$1	353	2	26	33.7272
GGG:::::::::::::::::::::	chr12:133095083-133095388(+)$1	305	241	265	36.0909
::::::::::::::::::::::::	chr17:80105139-80105415(-)$1	276	28	52	31.1818
:::::eeeee$$$$$eeeee[bb[	chr1:2209152-2209430(+)$1	278	138	162	32.7272
::::::::::::::::DDDD{BBP	chr21:46841927-46842199(+)$1	272	91	115	32.3636
::::::cccxxxxxxxxxxxxxxx	chr22:48043294-48043516(+)$1	222	88	112	45.3636
::::::::::::::::::::::::	chr6:158291051-158291280(+)$1	229	159	183	34.9090
::::::::::::::::::::::::	chr22:49846791-49847000(-)$1	209	80	104	31.8181
::::::::::::::::::::::::	chr21:46949718-46949936(-)$1	218	83	107	36.5454
:::::dddd$$$$$bb[bbqqqqq	chr16:4740576-4740827(+)$1	251	29	53	35.8181
ccmmmmccc==========+++++	chr21:46904149-46904364(+)$1	215	78	102	36.5454
::::::::::::::::::::::::	chr17:75466052-75466330(+)$1	278	81	105	27.5454
EE@@@@@@@@@@@@@@@@@@@@@B	chr6:170167385-170167643(+)$1	258	201	225	34.6363
ccc333ffffff22dddd::::::	chr21:46915687-46915930(+)$1	243	183	207	33.9090
ttttteeeee:::::JJJJJJJJJ	chr22:50004082-50004305(-)$1	223	17	41	28.3636
::::::::::::::::::::::::	chr19:5000133-5000454(+)$1	321	199	223	34.8181
:::::::DDDDNNNNNEEEEENNN	chr8:140814882-140815219(-)$1	337	19	43	30.6363
eooooooeeeee::::DDDD::::	chr22:48043477-48043702(+)$1	225	180	204	33.4545
GGGLLLFFFFFF::::::::::::	chr13:114562102-114562377(-)$1	275	10	34	33.4545
::::::::::::::::::::::::	chr13:114554388-114554607(-)$1	219	39	63	29.8181
::::eeeee^^^^^^^^^^^^^^^	chrX:3740721-3740981(-)$1	260	181	205	29.0000
[ccc[cccwwwwwwwwwwwwwwcc	chr3:129235581-129235818(+)$1	237	95	119	29.8181
::::::::::::::::::::::::	chr12:105064431-105064662(+)$1	231	168	192	35.5454
4444dddd::::::::::::::::	chr22:32025218-32025487(-)$1	269	226	250	31.7272
::::::::::::::::::::::::	chr16:12475171-12475448(+)$1	277	80	104	29.1818
::::::::::::::::::::::::	chr17:78255118-78255340(+)$1	222	7	31	32.8181
zzzzzzzzzeeeee>>>>>>>>>>	chr16:87327832-87328207(-)$1	375	224	248	29.6363
qqqqqqccc]a22ddddbb22bb2	chr18:75697205-75697427(-)$1	222	184	208	34.2727
^^^^^^^^^^^^^^^^^^^^^^^^	chr6:169000454-169000798(+)$1	344	170	194	39.0909
::::::ddddmmmmdddd:::ccc	chr16:85216616-85216909(+)$1	293	55	79	30.7272
::::::::::::::::::::::::	chr1:31367254-31367553(-)$1	299	124	148	37.3636

#DB
....))))))))............	chr2:236444548-236444816(+)$1	1	235	259	37.1818
........................	chr12:49976532-49976789(+)$1	1	49	73	32.0000
........................	chr7:128498605-128498862(+)$1	1	22	46	32.9090
))..)))).)))))....)))...	chr16:4718313-4718540(+)$1	1	109	133	30.0000
))...........)).))))...)	chr7:5509112-5509364(-)$1	1	204	228	33.7272
)).)))))....)).....)))))	chr16:46949141-46949372(+)$1	1	109	133	37.5454
........................	chr19:10488374-10488613(-)$1	1	109	133	32.6363
.....(((........)))...))	chr18:75697144-75697349(-)$1	1	153	177	38.0909
......))))..............	chr8:48422405-48422685(+)$1	1	67	91	41.0000
..................(((...	chr2:239982886-239983160(-)$1	1	2	26	30.8181
....................((((	chr2:241448059-241448293(-)$1	1	12	36	34.0000
(((..((......))..))))...	chr3:129039829-129040109(+)$1	1	75	99	32.7272
((....))))))............	chr18:75696709-75696926(-)$1	1	22	46	40.1818
((....)))))...........))	chr21:46949500-46949732(-)$1	1	201	225	32.7272
.....(((((((((.((((.((((	chr16:11557200-11557420(-)$1	1	38	62	31.7272
.))))))))...............	chr1:87451145-87451382(+)$1	1	82	106	36.7272
(((..((((.....((((((((..	chr21:46899129-46899387(+)$1	1	45	69	29.9090
.))))).......)))))).....	chr14:73267321-73267560(-)$1	1	68	92	28.3636
))))...)).((((.((((....(	chr21:46904253-46904482(+)$1	1	25	49	33.2727
........................	chr22:50038748-50039000(-)$1	1	25	49	30.3636
........................	chr1:230411209-230411433(+)$1	1	12	36	28.8181
........................	chr21:46949736-46949978(-)$1	1	125	149	36.5454
....))))..............((	chr12:113755950-113756255(-)$1	1	36	60	30.3636
))...........((((((....)	chr16:81505608-81505872(+)$1	1	71	95	31.6363
......((((..((..........	chr11:68478471-68478824(-)$1	1	2	26	33.7272
))).....................	chr12:133095083-133095388(+)$1	1	241	265	36.0909
........................	chr17:80105139-80105415(-)$1	1	28	52	31.1818
.....(((((.....(((((.((.	chr1:2209152-2209430(+)$1	1	138	162	32.7272
................((((.((.	chr21:46841927-46842199(+)$1	1	91	115	32.3636
......(((...............	chr22:48043294-48043516(+)$1	1	88	112	45.3636
........................	chr6:158291051-158291280(+)$1	1	159	183	34.9090
........................	chr22:49846791-49847000(-)$1	1	80	104	31.8181
........................	chr21:46949718-46949936(-)$1	1	83	107	36.5454
.....((((.....((.((.....	chr16:4740576-4740827(+)$1	1	29	53	35.8181
((....)))((((((((((.....	chr21:46904149-46904364(+)$1	1	78	102	36.5454
........................	chr17:75466052-75466330(+)$1	1	81	105	27.5454
)).....................)	chr6:170167385-170167643(+)$1	1	201	225	34.6363
)))...))))))..))))......	chr21:46915687-46915930(+)$1	1	183	207	33.9090
.....))))).....(((((((((	chr22:50004082-50004305(-)$1	1	17	41	28.3636
........................	chr19:5000133-5000454(+)$1	1	199	223	34.8181
.......((((.....(((((...	chr8:140814882-140815219(-)$1	1	19	43	30.6363
(......)))))....))))....	chr22:48043477-48043702(+)$1	1	180	204	33.4545
(((...((((((............	chr13:114562102-114562377(-)$1	1	10	34	33.4545
........................	chr13:114554388-114554607(-)$1	1	39	63	29.8181
....(((((...............	chrX:3740721-3740981(-)$1	1	181	205	29.0000
.(((.(((..............))	chr3:129235581-129235818(+)$1	1	95	119	29.8181
........................	chr12:105064431-105064662(+)$1	1	168	192	35.5454
....))))................	chr22:32025218-32025487(-)$1	1	226	250	31.7272
........................	chr16:12475171-12475448(+)$1	1	80	104	29.1818
........................	chr17:78255118-78255340(+)$1	1	7	31	32.8181
.........)))))..........	chr16:87327832-87328207(-)$1	1	224	248	29.6363
......))).)..))))))..)).	chr18:75697205-75697427(-)$1	1	184	208	34.2727
........................	chr6:169000454-169000798(+)$1	1	170	194	39.0909
......((((....))))...(((	chr16:85216616-85216909(+)$1	1	55	79	30.7272
........................	chr1:31367254-31367553(-)$1	1	124	148	37.3636

#PSSM
c : 0.85	C : 0.05	a : 0.03	U : 0.03	u : 0.01	
a : 0.85	u : 0.03	A : 0.03	C : 0.01	U : 0.01	g : 0.01	c : 0.01	
u : 0.52	c : 0.40	U : 0.05	A : 0.01	
a : 0.63	c : 0.25	u : 0.03	A : 0.03	U : 0.01	g : 0.01	
c : 0.85	u : 0.09	C : 0.05	
a : 0.76	g : 0.12	A : 0.05	c : 0.05	
u : 0.72	c : 0.16	g : 0.05	U : 0.03	G : 0.01	
g : 0.36	a : 0.25	c : 0.23	u : 0.09	G : 0.05	
c : 0.80	u : 0.10	g : 0.05	C : 0.03	
a : 0.81	u : 0.09	g : 0.03	A : 0.03	c : 0.01	
c : 0.83	u : 0.10	C : 0.03	g : 0.01	
a : 0.61	c : 0.23	u : 0.09	G : 0.01	g : 0.01	A : 0.01	
c : 0.87	u : 0.05	C : 0.03	a : 0.01	g : 0.01	
a : 0.89	u : 0.05	A : 0.03	g : 0.01	
c : 0.80	u : 0.12	C : 0.05	a : 0.01	
a : 0.70	c : 0.12	g : 0.07	A : 0.05	u : 0.03	
c : 0.90	C : 0.05	u : 0.03	
a : 0.83	g : 0.07	A : 0.05	u : 0.03	
c : 0.43	u : 0.43	U : 0.05	g : 0.03	C : 0.01	a : 0.01	
a : 0.30	u : 0.30	c : 0.16	g : 0.14	G : 0.03	A : 0.01	C : 0.01	
c : 0.85	C : 0.05	u : 0.03	a : 0.03	U : 0.01	
a : 0.85	u : 0.03	A : 0.01	C : 0.01	g : 0.01	U : 0.01	c : 0.01	G : 0.01	
c : 0.81	u : 0.09	C : 0.09	
a : 0.63	c : 0.21	A : 0.07	g : 0.03	C : 0.01	u : 0.01	

#score	1836.1818181818185
#seq	55
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_transcript_m1_run2.nuc.txt

#NT
AGCCCAUGAG	chrM:1287-1491(+)$1	204	52	62	23.5000
GGCCCAGGAG	chr17:48190190-48190399(-)$1	209	73	83	16.8750
AGCCCAUGAG	chr2:95564800-95565039(-)$1	239	113	123	23.5000
AGCCCACGGG	chr11:2151084-2151301(-)$1	217	167	177	17.7499
ugcccgugaa	chrM:2591-2794(+)$1	203	95	105	15.2500
agcccauggu	chr3:193373481-193373689(+)$1	208	13	23	17.6249
AGCCCAUGAG	chrM:1174-1379(+)$1	205	165	175	23.5000
agcccauggu	chr3:193373471-193373681(+)$1	210	23	33	17.6249
ugcccgugaa	chrM:2652-2861(+)$1	209	34	44	15.2500
AGCCCAUGAG	chrM:1316-1531(+)$1	215	23	33	23.5000
AGCCCAUGAG	chrM:1253-1459(+)$1	206	86	96	23.5000
AGCCCAUGAG	chrM:1248-1450(+)$1	202	91	101	23.5000
AGCCCAUGAG	chrM:1279-1485(+)$1	206	60	70	23.5000
ugcccgugaa	chrM:2528-2733(+)$1	205	158	168	15.2500
AGCCCAUGAG	chrM:1259-1464(+)$1	205	80	90	23.5000
AGCCCAUGAG	chrM:1151-1363(+)$1	212	188	198	23.5000
AGCCCAUGAG	chrM:1291-1500(+)$1	209	48	58	23.5000
AGCCCAUGAG	chrM:1268-1479(+)$1	211	71	81	23.5000
AGCCCAUGAG	chrM:1300-1504(+)$1	204	39	49	23.5000
AGCCCAUGAG	chrM:1244-1448(+)$1	204	95	105	23.5000
AGCCCAUGAG	chr5:79947159-79947457(-)$1	298	258	268	23.5000
AGCCCAUGAG	chrM:1227-1432(+)$1	205	112	122	23.5000
AGCCCACGGG	chr11:2151067-2151284(-)$1	217	150	160	17.7499
ugcccgugaa	chrM:2566-2774(+)$1	208	120	130	15.2500
AGCCCAUGAG	chrM:1179-1384(+)$1	205	160	170	23.5000
AGCCCACGGG	chr11:2151012-2151216(-)$1	204	82	92	17.7499
AGCCCAUGCA	chr14:32953647-32953883(-)$1	236	53	63	17.6249
ugcccgugaa	chrM:2594-2803(+)$1	209	92	102	15.2500
AGCCCACGGG	chr11:2151027-2151253(-)$1	226	119	129	17.7499
ugcccgugaa	chrM:2661-2870(+)$1	209	25	35	15.2500
AGCCCAUGAG	chrM:1250-1453(+)$1	203	89	99	23.5000
UGCCCAAGAU	chr11:62293167-62293470(-)$1	303	262	272	14.1250
AGCCCAUGAG	chrM:1163-1366(+)$1	203	176	186	23.5000
AGCCCACGGG	chr11:2150970-2151201(-)$1	231	67	77	17.7499
GGCCCAGGAG	chr17:48190199-48190411(-)$1	212	85	95	16.8750
AGCCCACGGG	chr11:2151016-2151227(-)$1	211	93	103	17.7499
AGGCCAGGAG	chr20:24944195-24944436(-)$1	241	16	26	15.3750
GGCCUAUGAG	chrM:10328-10552(+)$1	224	36	46	15.5000
ugcccgugaa	chrM:2670-2874(+)$1	204	16	26	15.2500

#otherMatches

#Struct PSSM
DDD}EEEEEY	chrM:5917-6152(+)$1	235	163	173	17.6249
=======vvv	chrM:1287-1491(+)$1	204	52	62	23.5000
3ccc888888	chr17:48190190-48190399(-)$1	209	73	83	16.8750
ff:::::GGG	chr2:95564800-95565039(-)$1	239	113	123	23.5000
e[bblllbb]	chr11:2151084-2151301(-)$1	217	167	177	17.7499
gggggggooo	chrM:2591-2794(+)$1	203	95	105	15.2500
cc!!ccc###	chr3:193373481-193373689(+)$1	208	13	23	17.6249
=======vvv	chrM:1174-1379(+)$1	205	165	175	23.5000
cc!!ccc###	chr3:193373471-193373681(+)$1	210	23	33	17.6249
gggggggooo	chrM:2652-2861(+)$1	209	34	44	15.2500
=======vvv	chrM:1316-1531(+)$1	215	23	33	23.5000
=======vvv	chrM:1253-1459(+)$1	206	86	96	23.5000
=======vvv	chrM:1248-1450(+)$1	202	91	101	23.5000
=======vvv	chrM:1279-1485(+)$1	206	60	70	23.5000
gggggggooo	chrM:2528-2733(+)$1	205	158	168	15.2500
=======vvv	chrM:1259-1464(+)$1	205	80	90	23.5000
CCC~~~~GGG	chrM:1151-1363(+)$1	212	188	198	23.5000
=======vvv	chrM:1291-1500(+)$1	209	48	58	23.5000
=======vvv	chrM:1268-1479(+)$1	211	71	81	23.5000
=======vvv	chrM:1300-1504(+)$1	204	39	49	23.5000
=======vvv	chrM:1244-1448(+)$1	204	95	105	23.5000
F______A}D	chr5:79947159-79947457(-)$1	298	258	268	23.5000
=======vvv	chrM:1227-1432(+)$1	205	112	122	23.5000
e[bblllbb]	chr11:2151067-2151284(-)$1	217	150	160	17.7499
gggggggooo	chrM:2566-2774(+)$1	208	120	130	15.2500
=======vvv	chrM:1179-1384(+)$1	205	160	170	23.5000
e[bblllbb]	chr11:2151012-2151216(-)$1	204	82	92	17.7499
:bbmmmmbb:	chr14:32953647-32953883(-)$1	236	53	63	17.6249
gggggggooo	chrM:2594-2803(+)$1	209	92	102	15.2500
e[bblllbb]	chr11:2151027-2151253(-)$1	226	119	129	17.7499
gggggggooo	chrM:2661-2870(+)$1	209	25	35	15.2500
=======vvv	chrM:1250-1453(+)$1	203	89	99	23.5000
bb!!bbrrrr	chr11:62293167-62293470(-)$1	303	262	272	14.1250
CCC~~~~GGG	chrM:1163-1366(+)$1	203	176	186	23.5000
FFFFKKGGGG	chr11:2150970-2151201(-)$1	231	67	77	17.7499
B}FFFFFF::	chr17:48190199-48190411(-)$1	212	85	95	16.8750
e[bblllbb]	chr11:2151016-2151227(-)$1	211	93	103	17.7499
fffff[bb[d	chr20:24944195-24944436(-)$1	241	16	26	15.3750
ccc:::GGGG	chrM:10328-10552(+)$1	224	36	46	15.5000
gggggggooo	chrM:2670-2874(+)$1	204	16	26	15.2500

#DB
))).))))).	chrM:5917-6152(+)$1	1	163	173	17.6249
(((((((...	chrM:1287-1491(+)$1	1	52	62	23.5000
.)))......	chr17:48190190-48190399(-)$1	1	73	83	16.8750
)).....)))	chr2:95564800-95565039(-)$1	1	113	123	23.5000
(.((...)).	chr11:2151084-2151301(-)$1	1	167	177	17.7499
(((((((...	chrM:2591-2794(+)$1	1	95	105	15.2500
((..(((...	chr3:193373481-193373689(+)$1	1	13	23	17.6249
(((((((...	chrM:1174-1379(+)$1	1	165	175	23.5000
((..(((...	chr3:193373471-193373681(+)$1	1	23	33	17.6249
(((((((...	chrM:2652-2861(+)$1	1	34	44	15.2500
(((((((...	chrM:1316-1531(+)$1	1	23	33	23.5000
(((((((...	chrM:1253-1459(+)$1	1	86	96	23.5000
(((((((...	chrM:1248-1450(+)$1	1	91	101	23.5000
(((((((...	chrM:1279-1485(+)$1	1	60	70	23.5000
(((((((...	chrM:2528-2733(+)$1	1	158	168	15.2500
(((((((...	chrM:1259-1464(+)$1	1	80	90	23.5000
)))....)))	chrM:1151-1363(+)$1	1	188	198	23.5000
(((((((...	chrM:1291-1500(+)$1	1	48	58	23.5000
(((((((...	chrM:1268-1479(+)$1	1	71	81	23.5000
(((((((...	chrM:1300-1504(+)$1	1	39	49	23.5000
(((((((...	chrM:1244-1448(+)$1	1	95	105	23.5000
)......).)	chr5:79947159-79947457(-)$1	1	258	268	23.5000
(((((((...	chrM:1227-1432(+)$1	1	112	122	23.5000
(.((...)).	chr11:2151067-2151284(-)$1	1	150	160	17.7499
(((((((...	chrM:2566-2774(+)$1	1	120	130	15.2500
(((((((...	chrM:1179-1384(+)$1	1	160	170	23.5000
(.((...)).	chr11:2151012-2151216(-)$1	1	82	92	17.7499
.((....)).	chr14:32953647-32953883(-)$1	1	53	63	17.6249
(((((((...	chrM:2594-2803(+)$1	1	92	102	15.2500
(.((...)).	chr11:2151027-2151253(-)$1	1	119	129	17.7499
(((((((...	chrM:2661-2870(+)$1	1	25	35	15.2500
(((((((...	chrM:1250-1453(+)$1	1	89	99	23.5000
((..((....	chr11:62293167-62293470(-)$1	1	262	272	14.1250
)))....)))	chrM:1163-1366(+)$1	1	176	186	23.5000
((((..((((	chr11:2150970-2151201(-)$1	1	67	77	17.7499
).))))))..	chr17:48190199-48190411(-)$1	1	85	95	16.8750
(.((...)).	chr11:2151016-2151227(-)$1	1	93	103	17.7499
(((((.((.(	chr20:24944195-24944436(-)$1	1	16	26	15.3750
)))...((((	chrM:10328-10552(+)$1	1	36	46	15.5000
(((((((...	chrM:2670-2874(+)$1	1	16	26	15.2500

#PSSM
A : 0.67	u : 0.17	G : 0.07	a : 0.05	U : 0.02	
G : 0.77	g : 0.22	
C : 0.75	c : 0.22	G : 0.02	
C : 0.77	c : 0.22	
C : 0.75	c : 0.22	U : 0.02	
A : 0.77	g : 0.17	a : 0.05	
U : 0.52	u : 0.22	C : 0.15	G : 0.07	A : 0.02	
G : 0.77	g : 0.22	
A : 0.57	a : 0.17	G : 0.15	C : 0.05	g : 0.05	
G : 0.70	a : 0.17	A : 0.05	u : 0.05	U : 0.02	

#score	785.5
#seq	40
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_UTR_m2_run1.nuc.txt

#NT
gaugaagaggaaaaa	chr17:16029294-16029551(-)$1	257	121	136	21.0975
GAGGAAGAGGAAGGG	chr8:145737243-145737512(-)$1	269	150	165	27.4390
gaagaggaagaagag	chr5:179151674-179151885(+)$1	211	40	55	25.6097
GAGGAGGAGGAGGAG	chr14:23790733-23790994(+)$1	261	233	248	30.9756
gaggaggaggaagag	chr1:193091141-193091437(+)$1	296	94	109	32.9268
CAGGAGCUGGAGGAG	chr8:26151076-26151372(+)$1	296	102	117	18.4146
GAGGAAGAGGAAAAA	chr7:100464925-100465179(+)$1	254	60	75	25.2439
ggggaaggggaagaa	chr1:16891200-16891505(-)$1	305	105	120	21.3414
gaggaugaggaagaa	chr11:129992157-129992475(+)$1	318	103	118	28.7804
gaugaagaugaagaa	chr4:174253061-174253272(-)$1	211	24	39	22.1951
GGAGAAGAGGAAGCG	chr6:13615864-13616111(+)$1	247	97	112	19.2682
GAGAAGGCGGAGGUG	chr19:50167784-50168086(-)$1	302	231	246	17.9268
gaggaggaggaagag	chr6:8435500-8435856(-)$1	356	167	182	32.9268
GAGGUGGGGGCAGAG	chr19:5713083-5713336(-)$1	253	217	232	20.3658
GAGGAGGACGCUGAG	chr16:2587936-2588254(+)$1	318	107	122	22.1951
gaggaggacgaggag	chr16:22337038-22337334(+)$1	296	213	228	27.8048
gaggaugaugaagag	chr17:42284790-42285061(-)$1	271	105	120	27.4390
gaggaggaggaagaa	chr2:232576551-232576780(+)$1	229	117	132	31.0975
GAGGAAGAAGAAGAG	chr1:27105546-27105833(+)$1	287	165	180	28.0487
AGGGUGGAGGAAGAA	chr13:107211621-107212031(-)$1	410	99	114	18.7804
GAGGAGAAGGAGGAG	chr3:49977489-49977761(+)$1	272	128	143	26.9512
gaggaggaggaagaa	chr4:174253120-174253329(-)$1	209	42	57	31.0975
GAGGAAGAUGAAGAA	chr15:69072654-69072866(-)$1	212	93	108	26.3414
gaggaggacgaggag	chr16:22337134-22337433(+)$1	299	117	132	27.8048
gaggaggaggaggag	chr9:74383197-74383526(-)$1	329	9	24	30.9756
GAAGAUGAAGAAGAG	chr6:136582305-136582599(-)$1	294	134	149	23.2926
gaggaagaggaagag	chr11:129991597-129991805(+)$1	208	58	73	31.3414
GAGGUGGAGGAAGCC	chr1:1235856-1236141(-)$1	285	175	190	21.9512
gaggaugaggaagaa	chr11:129992097-129992357(+)$1	260	163	178	28.7804
GAGGAAGAGGAAGAG	chr20:36361222-36361575(+)$1	353	232	247	31.3414
GCGGAGCUGGAGGAG	chr14:23564136-23564423(-)$1	287	105	120	18.5365
GAGGAGAACGAAGAG	chr5:64859156-64859449(+)$1	293	110	125	25.7317
gaggaggaggaagag	chr1:150198838-150199109(-)$1	271	47	62	32.9268
CCGGAGGAGCAGGAG	chr4:83821160-83821444(-)$1	284	127	142	17.8048
gaggaggaggaagaa	chr4:174253099-174253320(-)$1	221	33	48	31.0975
GAGGAAGAGGAUGGA	chr2:232577051-232577257(+)$1	206	103	118	22.5609
GAGGAUGAUGAAGAG	chr2:128051052-128051351(-)$1	299	95	110	27.4390
GAGGAGAAGGAAAAG	chr19:9679563-9679846(-)$1	283	123	138	24.6341
GAGGUCGAGGAGGAC	chr10:103577669-103577926(-)$1	257	100	115	21.2195
UAGGAGGAGGAGGGG	chr7:115850591-115850880(+)$1	289	136	151	22.6829

#otherMatches

#Struct PSSM
'''eeeee"""bb##	chr8:144922777-144923191(-)$1	414	233	248	20.8536
:::::::::::::::	chr17:16029294-16029551(-)$1	257	121	136	21.0975
a]bb22ccc:::CCC	chr8:145737243-145737512(-)$1	269	150	165	27.4390
b22dddd::::::::	chr5:179151674-179151885(+)$1	211	40	55	25.6097
vvvvvvvvvvvbb]f	chr14:23790733-23790994(+)$1	261	233	248	30.9756
]ccc::EEEEE:::D	chr1:193091141-193091437(+)$1	296	94	109	32.9268
===lll=========	chr8:26151076-26151372(+)$1	296	102	117	18.4146
dd]bb::::::::::	chr7:100464925-100465179(+)$1	254	60	75	25.2439
eeeee22ccc:::::	chr1:16891200-16891505(-)$1	305	105	120	21.3414
:EEEEE}JJJJJJJJ	chr11:129992157-129992475(+)$1	318	103	118	28.7804
hhhh"""bbrrrrrr	chr4:174253061-174253272(-)$1	211	24	39	22.1951
cccdddd]bb:ccc!	chr6:13615864-13616111(+)$1	247	97	112	19.2682
[a"""dddd!!cccc	chr19:50167784-50168086(-)$1	302	231	246	17.9268
DMMMMFFFFFF{HHH	chr6:8435500-8435856(-)$1	356	167	182	32.9268
HHHH}CCC}FFFFFF	chr19:5713083-5713336(-)$1	253	217	232	20.3658
bbbb22a]a]bb]a4	chr16:2587936-2588254(+)$1	318	107	122	22.1951
A}A}BB}BBZZZAYY	chr16:22337038-22337334(+)$1	296	213	228	27.8048
^^^^^^^^^^^^^^^	chr17:42284790-42285061(-)$1	271	105	120	27.4390
gggg[ffffffccc!	chr2:232576551-232576780(+)$1	229	117	132	31.0975
g::::::::gggggg	chr1:27105546-27105833(+)$1	287	165	180	28.0487
:DDDDEEEEE{FFFF	chr13:107211621-107212031(-)$1	410	99	114	18.7804
EEEE:::CCCKKA{G	chr3:49977489-49977761(+)$1	272	128	143	26.9512
:::::::::::::::	chr4:174253120-174253329(-)$1	209	42	57	31.0975
]bbdddd[dddd!!b	chr15:69072654-69072866(-)$1	212	93	108	26.3414
KKEEEEE{BBKKA:b	chr16:22337134-22337433(+)$1	299	117	132	27.8048
D{DDDDKKBB{BB{B	chr9:74383197-74383526(-)$1	329	9	24	30.9756
==========bb###	chr6:136582305-136582599(-)$1	294	134	149	23.2926
A{CCC:::eeeee[b	chr11:129991597-129991805(+)$1	208	58	73	31.3414
llldddd]bb22ccc	chr1:1235856-1236141(-)$1	285	175	190	21.9512
:EEEEE}JJJJJJJJ	chr11:129992097-129992357(+)$1	260	163	178	28.7804
BB}A}EEEEEZZZCC	chr20:36361222-36361575(+)$1	353	232	247	31.3414
cccbb:::::::JJJ	chr14:23564136-23564423(-)$1	287	105	120	18.5365
b]ccc]a]bb4444b	chr5:64859156-64859449(+)$1	293	110	125	25.7317
^^^^^^^^^^^^^^^	chr1:150198838-150199109(-)$1	271	47	62	32.9268
CKKGGGGGGGggggg	chr4:83821160-83821444(-)$1	284	127	142	17.8048
:::::::::::::::	chr4:174253099-174253320(-)$1	221	33	48	31.0975
oobb]gggggggFFF	chr2:232577051-232577257(+)$1	206	103	118	22.5609
:::::::::::::::	chr2:128051052-128051351(-)$1	299	95	110	27.4390
IIII}HHHHHHHH:d	chr19:9679563-9679846(-)$1	283	123	138	24.6341
::ddddooooooddd	chr10:103577669-103577926(-)$1	257	100	115	21.2195
dddd[dddd[bb!!a	chr7:115850591-115850880(+)$1	289	136	151	22.6829

#DB
...(((((...((..	chr8:144922777-144923191(-)$1	1	233	248	20.8536
...............	chr17:16029294-16029551(-)$1	1	121	136	21.0975
).))..)))...)))	chr8:145737243-145737512(-)$1	1	150	165	27.4390
)..))))........	chr5:179151674-179151885(+)$1	1	40	55	25.6097
...........)).)	chr14:23790733-23790994(+)$1	1	233	248	30.9756
.)))..)))))...(	chr1:193091141-193091437(+)$1	1	94	109	32.9268
(((...)))))))))	chr8:26151076-26151372(+)$1	1	102	117	18.4146
)).))..........	chr7:100464925-100465179(+)$1	1	60	75	25.2439
)))))..))).....	chr1:16891200-16891505(-)$1	1	105	120	21.3414
.))))).))))))))	chr11:129992157-129992475(+)$1	1	103	118	28.7804
((((...((......	chr4:174253061-174253272(-)$1	1	24	39	22.1951
))))))).)).(((.	chr6:13615864-13616111(+)$1	1	97	112	19.2682
.(...((((..((((	chr19:50167784-50168086(-)$1	1	231	246	17.9268
(....((((((.(((	chr6:8435500-8435856(-)$1	1	167	182	32.9268
)))).))).))))))	chr19:5713083-5713336(-)$1	1	217	232	20.3658
))))..).).)).).	chr16:2587936-2588254(+)$1	1	107	122	22.1951
).).)).))...)..	chr16:22337038-22337334(+)$1	1	213	228	27.8048
...............	chr17:42284790-42285061(-)$1	1	105	120	27.4390
((((.(((((((((.	chr2:232576551-232576780(+)$1	1	117	132	31.0975
)........((((((	chr1:27105546-27105833(+)$1	1	165	180	28.0487
.(((((((((.((((	chr13:107211621-107212031(-)$1	1	99	114	18.7804
))))...(((..(.(	chr3:49977489-49977761(+)$1	1	128	143	26.9512
...............	chr4:174253120-174253329(-)$1	1	42	57	31.0975
.))((((.((((..(	chr15:69072654-69072866(-)$1	1	93	108	26.3414
..(((((.((..(.(	chr16:22337134-22337433(+)$1	1	117	132	27.8048
(.((((..((.((.(	chr9:74383197-74383526(-)$1	1	9	24	30.9756
((((((((((((...	chr6:136582305-136582599(-)$1	1	134	149	23.2926
(.(((...(((((.(	chr11:129991597-129991805(+)$1	1	58	73	31.3414
...)))).))..)))	chr1:1235856-1236141(-)$1	1	175	190	21.9512
.))))).))))))))	chr11:129992097-129992357(+)$1	1	163	178	28.7804
)).).)))))...))	chr20:36361222-36361575(+)$1	1	232	247	31.3414
))))).......)))	chr14:23564136-23564423(-)$1	1	105	120	18.5365
).))).).))....)	chr5:64859156-64859449(+)$1	1	110	125	25.7317
...............	chr1:150198838-150199109(-)$1	1	47	62	32.9268
(..((((((((((((	chr4:83821160-83821444(-)$1	1	127	142	17.8048
...............	chr4:174253099-174253320(-)$1	1	33	48	31.0975
..)).))))))))))	chr2:232577051-232577257(+)$1	1	103	118	22.5609
...............	chr2:128051052-128051351(-)$1	1	95	110	27.4390
)))).)))))))).(	chr19:9679563-9679846(-)$1	1	123	138	24.6341
..((((......)))	chr10:103577669-103577926(-)$1	1	100	115	21.2195
((((.((((.((..(	chr7:115850591-115850880(+)$1	1	136	151	22.6829

#PSSM
G : 0.46	g : 0.43	C : 0.04	A : 0.02	U : 0.02	
A : 0.46	a : 0.41	G : 0.04	C : 0.04	g : 0.02	
G : 0.51	g : 0.36	u : 0.04	A : 0.04	a : 0.02	
G : 0.53	g : 0.41	c : 0.02	A : 0.02	
A : 0.46	a : 0.41	U : 0.09	g : 0.02	
G : 0.31	g : 0.26	A : 0.17	a : 0.09	u : 0.07	U : 0.04	C : 0.02	
g : 0.43	G : 0.43	A : 0.07	C : 0.04	
A : 0.46	a : 0.41	U : 0.04	g : 0.02	C : 0.02	G : 0.02	
G : 0.41	g : 0.31	u : 0.04	C : 0.04	c : 0.04	A : 0.04	U : 0.04	a : 0.02	
G : 0.53	g : 0.43	C : 0.02	
A : 0.51	a : 0.43	C : 0.04	
a : 0.34	A : 0.31	G : 0.19	g : 0.07	U : 0.04	c : 0.02	
G : 0.51	g : 0.41	A : 0.04	a : 0.02	
a : 0.43	A : 0.41	G : 0.07	C : 0.04	U : 0.02	
G : 0.41	g : 0.24	a : 0.19	A : 0.09	C : 0.04	

#score	1045.2439024390249
#seq	41
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_UTR_m3_run2.nuc.txt

#NT
UCU	chr17:75452335-75452604(+)$1	269	16	19	9.0000
UCU	chr3:113464486-113464775(-)$1	289	106	109	9.0000
UCU	chr5:74161197-74161501(-)$1	304	39	42	9.0000
ucu	chr1:26147380-26147680(+)$1	300	50	53	9.0000
UCU	chr19:50168041-50168352(-)$1	311	10	13	9.0000
UCU	chr3:49050497-49050788(+)$1	291	9	12	9.0000
UCU	chr17:41622526-41622805(+)$1	279	98	101	9.0000
UCU	chr11:703358-703645(-)$1	287	10	13	9.0000
UCU	chr16:2579729-2579975(+)$1	246	147	150	9.0000
UCU	chr3:195796304-195796540(-)$1	236	9	12	9.0000
UCU	chr11:66394121-66394379(+)$1	258	96	99	9.0000
UCU	chr10:74035261-74035511(+)$1	250	121	124	9.0000
ucu	chr17:74731214-74731466(-)$1	252	3	6	9.0000
UCU	chr12:8025158-8025442(-)$1	284	32	35	9.0000
UCU	chr16:2821104-2821355(+)$1	251	141	144	9.0000
UCU	chr14:104152143-104152436(+)$1	293	15	18	9.0000
UCU	chr8:71314210-71314465(-)$1	255	1	4	9.0000
UCU	chr22:41755305-41755580(+)$1	275	9	12	9.0000
UCU	chr16:57220711-57220971(+)$1	260	0	3	9.0000
UCU	chr8:134308972-134309242(-)$1	270	105	108	9.0000
UCU	chr1:1336649-1336964(+)$1	315	13	16	9.0000
UCU	chr19:2270253-2270568(+)$1	315	33	36	9.0000
UCU	chr16:28876805-28877047(+)$1	242	73	76	9.0000
UCU	chr11:18425214-18425435(+)$1	221	7	10	9.0000
UCU	chr6:31919696-31919947(+)$1	251	49	52	9.0000
UCU	chr8:144679209-144679499(-)$1	290	228	231	9.0000
UCU	chr17:74730244-74730500(-)$1	256	75	78	9.0000
UCU	chr16:68331309-68331656(+)$1	347	0	3	9.0000
UCU	chr3:32936323-32936602(+)$1	279	90	93	9.0000
UCU	chr11:82535691-82535970(-)$1	279	46	49	9.0000
UCU	chr12:125398641-125398963(-)$1	322	81	84	9.0000
UCU	chr2:20549869-20550113(-)$1	244	42	45	9.0000
UCU	chr16:2581146-2581444(+)$1	298	205	208	9.0000
UCU	chr10:102758631-102758912(+)$1	281	68	71	9.0000
UCU	chr2:178128151-178128399(-)$1	248	157	160	9.0000
UCU	chr16:2580590-2580881(+)$1	291	28	31	9.0000
UCU	chr11:64073910-64074163(+)$1	253	21	24	9.0000
UCU	chr12:30907133-30907456(-)$1	323	25	28	9.0000
UCU	chr3:49045518-49045768(+)$1	250	191	194	9.0000
UCU	chr8:134308518-134308847(-)$1	329	11	14	9.0000
UCU	chr5:73924808-73925103(-)$1	295	193	196	9.0000
UCU	chr21:34942094-34942381(+)$1	287	6	9	9.0000
UCU	chr20:60710053-60710329(+)$1	276	9	12	9.0000
UCU	chr8:144674985-144675247(-)$1	262	45	48	9.0000
UCU	chr14:20923410-20923668(+)$1	258	37	40	9.0000
UCU	chr1:1327646-1327926(-)$1	280	42	45	9.0000
UCU	chr1:47842913-47843200(+)$1	287	102	105	9.0000
UCU	chr2:131808664-131808926(-)$1	262	25	28	9.0000
UCU	chr17:7477028-7477309(+)$1	281	154	157	9.0000
UCU	chr15:72521844-72522138(-)$1	294	85	88	9.0000
UCU	chr14:105259208-105259485(-)$1	277	113	116	9.0000
UCU	chr17:75450071-75450338(+)$1	267	50	53	9.0000
UCU	chr9:110046150-110046532(+)$1	382	144	147	9.0000
UCU	chr8:134309042-134309329(-)$1	287	192	195	9.0000
UCU	chr20:24943988-24944271(-)$1	283	7	10	9.0000
UCU	chr6:117996584-117996877(+)$1	293	231	234	9.0000
UCU	chr20:33872250-33872486(-)$1	236	44	47	9.0000
UCU	chr11:18425235-18425451(+)$1	216	38	41	9.0000
UCU	chr8:144678726-144678991(-)$1	265	23	26	9.0000
UCU	chr20:62565176-62565444(+)$1	268	3	6	9.0000

#otherMatches

#Struct PSSM
f$$	chr14:24908336-24908590(+)$1	254	87	90	9.0000
fff	chr17:75452335-75452604(+)$1	269	16	19	9.0000
ddC	chr3:113464486-113464775(-)$1	289	106	109	9.0000
EEE	chr5:74161197-74161501(-)$1	304	39	42	9.0000
ii^	chr1:26147380-26147680(+)$1	300	50	53	9.0000
ccc	chr19:50168041-50168352(-)$1	311	10	13	9.0000
[bb	chr3:49050497-49050788(+)$1	291	9	12	9.0000
ffg	chr17:41622526-41622805(+)$1	279	98	101	9.0000
c!!	chr11:703358-703645(-)$1	287	10	13	9.0000
fff	chr16:2579729-2579975(+)$1	246	147	150	9.0000
c!!	chr3:195796304-195796540(-)$1	236	9	12	9.0000
ddd	chr11:66394121-66394379(+)$1	258	96	99	9.0000
FFF	chr10:74035261-74035511(+)$1	250	121	124	9.0000
:::	chr17:74731214-74731466(-)$1	252	3	6	9.0000
JJJ	chr12:8025158-8025442(-)$1	284	32	35	9.0000
ggg	chr16:2821104-2821355(+)$1	251	141	144	9.0000
:::	chr14:104152143-104152436(+)$1	293	15	18	9.0000
:CC	chr8:71314210-71314465(-)$1	255	1	4	9.0000
[af	chr22:41755305-41755580(+)$1	275	9	12	9.0000
EEE	chr16:57220711-57220971(+)$1	260	0	3	9.0000
444	chr8:134308972-134309242(-)$1	270	105	108	9.0000
ggg	chr1:1336649-1336964(+)$1	315	13	16	9.0000
ooo	chr19:2270253-2270568(+)$1	315	33	36	9.0000
ii[	chr16:28876805-28877047(+)$1	242	73	76	9.0000
EEE	chr11:18425214-18425435(+)$1	221	7	10	9.0000
hhh	chr6:31919696-31919947(+)$1	251	49	52	9.0000
occ	chr8:144679209-144679499(-)$1	290	228	231	9.0000
ddn	chr17:74730244-74730500(-)$1	256	75	78	9.0000
:ee	chr16:68331309-68331656(+)$1	347	0	3	9.0000
ddf	chr3:32936323-32936602(+)$1	279	90	93	9.0000
44e	chr11:82535691-82535970(-)$1	279	46	49	9.0000
eee	chr12:125398641-125398963(-)$1	322	81	84	9.0000
ggg	chr2:20549869-20550113(-)$1	244	42	45	9.0000
]cc	chr16:2581146-2581444(+)$1	298	205	208	9.0000
fff	chr10:102758631-102758912(+)$1	281	68	71	9.0000
ddd	chr2:178128151-178128399(-)$1	248	157	160	9.0000
HHH	chr16:2580590-2580881(+)$1	291	28	31	9.0000
eee	chr11:64073910-64074163(+)$1	253	21	24	9.0000
KGG	chr12:30907133-30907456(-)$1	323	25	28	9.0000
ddd	chr3:49045518-49045768(+)$1	250	191	194	9.0000
JJJ	chr8:134308518-134308847(-)$1	329	11	14	9.0000
^^^	chr5:73924808-73925103(-)$1	295	193	196	9.0000
hhh	chr21:34942094-34942381(+)$1	287	6	9	9.0000
DCC	chr20:60710053-60710329(+)$1	276	9	12	9.0000
(((	chr8:144674985-144675247(-)$1	262	45	48	9.0000
hhh	chr14:20923410-20923668(+)$1	258	37	40	9.0000
fff	chr1:1327646-1327926(-)$1	280	42	45	9.0000
:::	chr1:47842913-47843200(+)$1	287	102	105	9.0000
fff	chr2:131808664-131808926(-)$1	262	25	28	9.0000
:::	chr17:7477028-7477309(+)$1	281	154	157	9.0000
^^^	chr15:72521844-72522138(-)$1	294	85	88	9.0000
Ecc	chr14:105259208-105259485(-)$1	277	113	116	9.0000
e00	chr17:75450071-75450338(+)$1	267	50	53	9.0000
ccc	chr9:110046150-110046532(+)$1	382	144	147	9.0000
444	chr8:134309042-134309329(-)$1	287	192	195	9.0000
d$$	chr20:24943988-24944271(-)$1	283	7	10	9.0000
fff	chr6:117996584-117996877(+)$1	293	231	234	9.0000
ddd	chr20:33872250-33872486(-)$1	236	44	47	9.0000
ddh	chr11:18425235-18425451(+)$1	216	38	41	9.0000
HII	chr8:144678726-144678991(-)$1	265	23	26	9.0000
DDD	chr20:62565176-62565444(+)$1	268	3	6	9.0000

#DB
(..	chr14:24908336-24908590(+)$1	1	87	90	9.0000
(((	chr17:75452335-75452604(+)$1	1	16	19	9.0000
)))	chr3:113464486-113464775(-)$1	1	106	109	9.0000
(((	chr5:74161197-74161501(-)$1	1	39	42	9.0000
((.	chr1:26147380-26147680(+)$1	1	50	53	9.0000
(((	chr19:50168041-50168352(-)$1	1	10	13	9.0000
.((	chr3:49050497-49050788(+)$1	1	9	12	9.0000
(((	chr17:41622526-41622805(+)$1	1	98	101	9.0000
(..	chr11:703358-703645(-)$1	1	10	13	9.0000
(((	chr16:2579729-2579975(+)$1	1	147	150	9.0000
(..	chr3:195796304-195796540(-)$1	1	9	12	9.0000
)))	chr11:66394121-66394379(+)$1	1	96	99	9.0000
(((	chr10:74035261-74035511(+)$1	1	121	124	9.0000
...	chr17:74731214-74731466(-)$1	1	3	6	9.0000
(((	chr12:8025158-8025442(-)$1	1	32	35	9.0000
(((	chr16:2821104-2821355(+)$1	1	141	144	9.0000
...	chr14:104152143-104152436(+)$1	1	15	18	9.0000
.((	chr8:71314210-71314465(-)$1	1	1	4	9.0000
.((	chr22:41755305-41755580(+)$1	1	9	12	9.0000
(((	chr16:57220711-57220971(+)$1	1	0	3	9.0000
...	chr8:134308972-134309242(-)$1	1	105	108	9.0000
(((	chr1:1336649-1336964(+)$1	1	13	16	9.0000
...	chr19:2270253-2270568(+)$1	1	33	36	9.0000
((.	chr16:28876805-28877047(+)$1	1	73	76	9.0000
(((	chr11:18425214-18425435(+)$1	1	7	10	9.0000
(((	chr6:31919696-31919947(+)$1	1	49	52	9.0000
.))	chr8:144679209-144679499(-)$1	1	228	231	9.0000
((.	chr17:74730244-74730500(-)$1	1	75	78	9.0000
.((	chr16:68331309-68331656(+)$1	1	0	3	9.0000
(((	chr3:32936323-32936602(+)$1	1	90	93	9.0000
..)	chr11:82535691-82535970(-)$1	1	46	49	9.0000
)))	chr12:125398641-125398963(-)$1	1	81	84	9.0000
(((	chr2:20549869-20550113(-)$1	1	42	45	9.0000
.))	chr16:2581146-2581444(+)$1	1	205	208	9.0000
(((	chr10:102758631-102758912(+)$1	1	68	71	9.0000
(((	chr2:178128151-178128399(-)$1	1	157	160	9.0000
(((	chr16:2580590-2580881(+)$1	1	28	31	9.0000
(((	chr11:64073910-64074163(+)$1	1	21	24	9.0000
.((	chr12:30907133-30907456(-)$1	1	25	28	9.0000
)))	chr3:49045518-49045768(+)$1	1	191	194	9.0000
(((	chr8:134308518-134308847(-)$1	1	11	14	9.0000
...	chr5:73924808-73925103(-)$1	1	193	196	9.0000
(((	chr21:34942094-34942381(+)$1	1	6	9	9.0000
(((	chr20:60710053-60710329(+)$1	1	9	12	9.0000
...	chr8:144674985-144675247(-)$1	1	45	48	9.0000
(((	chr14:20923410-20923668(+)$1	1	37	40	9.0000
(((	chr1:1327646-1327926(-)$1	1	42	45	9.0000
...	chr1:47842913-47843200(+)$1	1	102	105	9.0000
(((	chr2:131808664-131808926(-)$1	1	25	28	9.0000
...	chr17:7477028-7477309(+)$1	1	154	157	9.0000
...	chr15:72521844-72522138(-)$1	1	85	88	9.0000
)((	chr14:105259208-105259485(-)$1	1	113	116	9.0000
)..	chr17:75450071-75450338(+)$1	1	50	53	9.0000
(((	chr9:110046150-110046532(+)$1	1	144	147	9.0000
...	chr8:134309042-134309329(-)$1	1	192	195	9.0000
(..	chr20:24943988-24944271(-)$1	1	7	10	9.0000
)))	chr6:117996584-117996877(+)$1	1	231	234	9.0000
(((	chr20:33872250-33872486(-)$1	1	44	47	9.0000
(((	chr11:18425235-18425451(+)$1	1	38	41	9.0000
(((	chr8:144678726-144678991(-)$1	1	23	26	9.0000
(((	chr20:62565176-62565444(+)$1	1	3	6	9.0000

#PSSM
U : 0.96	u : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	

#score	549.0000000000001
#seq	61
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_UTR_m2_run1.nuc.txt

#NT
UGUUCUU	chr1:205057808-205058066(-)$1	258	58	65	13.5694
UGUUUCU	chr2:70451615-70451915(-)$1	300	139	146	13.7083
UGUUUUU	chr8:64081813-64082112(+)$1	299	235	242	17.8055
UGUUUUU	chr3:195785015-195785264(-)$1	249	98	105	17.8055
UGUUUUU	chr12:123665593-123665869(-)$1	276	97	104	17.8055
UGCUUUU	chr3:9475403-9475658(+)$1	255	105	112	13.6388
UGUUCUU	chr5:175782605-175782861(-)$1	256	100	107	13.5694
UGUUUGU	chr17:62499847-62500121(-)$1	274	107	114	13.4999
UGUUUUU	chr2:135815596-135815844(+)$1	248	152	159	17.8055
UGUUUUU	chr7:104715151-104715456(+)$1	305	124	131	17.8055
UGUUUUU	chr1:28834533-28834804(+)$1	271	157	164	17.8055
UGUUUUU	chr3:141712236-141712536(-)$1	300	79	86	17.8055
UGAUUUU	chr7:104717296-104717551(+)$1	255	104	111	13.5694
UGUUCUU	chr11:62609007-62609214(-)$1	207	192	199	13.5694
UGUAUUU	chr21:34994178-34994467(-)$1	289	189	196	13.6388
UGUUUCU	chr3:156870680-156870958(-)$1	278	208	215	13.7083
UGUUUUU	chr11:14540413-14540689(-)$1	276	156	163	17.8055
AGUUUUU	chr7:104716366-104716648(+)$1	282	82	89	13.4305
UGUGUUU	chr7:116544362-116544609(+)$1	247	102	109	13.5694
UGUUUUU	chr2:234754257-234754577(-)$1	320	225	232	17.8055
UGUUUUU	chr6:160169265-160169540(+)$1	275	39	46	17.8055
UGUUUUU	chr3:195789623-195789907(-)$1	284	250	257	17.8055
UGGUUUU	chr12:80238961-80239220(-)$1	259	9	16	13.4305
UGUGUUU	chr3:197023927-197024226(-)$1	299	108	115	13.5694
UGUAUUU	chr16:66851256-66851498(-)$1	242	206	213	13.6388
UGUUUUU	chr22:20114376-20114596(+)$1	220	89	96	17.8055
UGUuugu	chr12:56680125-56680396(-)$1	271	130	137	13.4999
UGCUUUU	chr1:24297887-24298134(-)$1	247	8	15	13.6388
UGAUUUU	chr3:50140373-50140636(+)$1	263	57	64	13.5694
UCUUUUU	chr4:83820752-83821012(-)$1	260	91	98	13.5694
UGAUUUU	chr8:56985709-56985976(-)$1	267	75	82	13.5694
UUUUUUU	chr3:150276056-150276354(+)$1	298	60	67	13.4305
AGUUUUU	chr12:123005800-123006089(-)$1	289	48	55	13.4305
UGUUUCU	chr17:62499557-62499791(-)$1	234	85	92	13.7083
UGUUCUU	chr7:131099352-131099608(+)$1	256	6	13	13.5694
UGUUUUU	chr6:4061810-4062086(+)$1	276	21	28	17.8055
UGUUUUU	chr12:110770363-110770657(+)$1	294	261	268	17.8055
UGUUGUU	chr17:25635509-25635765(+)$1	256	48	55	13.4305
uguuuuu	chr5:40834126-40834392(-)$1	266	239	246	17.8055
UGCUUUU	chr5:130498048-130498343(-)$1	295	110	117	13.6388
UGUUUUU	chr6:4064918-4065180(+)$1	262	12	19	17.8055
UGUCUUU	chr18:13057609-13057862(+)$1	253	134	141	13.4305
UGUUUUU	chr18:33720983-33721226(+)$1	243	98	105	17.8055
UGUUUUU	chr11:118963000-118963247(+)$1	247	99	106	17.8055
UGUUUCU	chr8:124381964-124382314(-)$1	350	310	317	13.7083
UCUUUUU	chr8:22885120-22885373(-)$1	253	97	104	13.5694
CGUUUUU	chr21:45212463-45212756(+)$1	293	66	73	13.2222
UGUUUUA	chr16:74685676-74685937(-)$1	261	244	251	13.1527
UGUUUUU	chr2:135815465-135815787(+)$1	322	283	290	17.8055
UGUUUUU	chr10:3821640-3821916(-)$1	276	135	142	17.8055
UGUUAUU	chr17:74731013-74731363(-)$1	350	306	313	13.3611
UUUUUUU	chr17:40146828-40147124(-)$1	296	97	104	13.4305
UAUUUUU	chr15:79178427-79178686(+)$1	259	18	25	13.3611
UGUAUUU	chr12:69236343-69236556(-)$1	213	178	185	13.6388
AGUUUUU	chr3:141640685-141640957(+)$1	272	76	83	13.4305
UGUAUUU	chr9:114155834-114156141(-)$1	307	221	228	13.6388
UGUUUUU	chr2:170470834-170471100(+)$1	266	89	96	17.8055
AGUUUUU	chr3:180325427-180325691(+)$1	264	25	32	13.4305
UGUUUCU	chr6:43594517-43594826(-)$1	309	128	135	13.7083
UGCUUUU	chr17:65715681-65715938(+)$1	257	51	58	13.6388
UCUUUUU	chr8:124796572-124796848(+)$1	276	52	59	13.5694
UGUUUUU	chr5:33448531-33448772(+)$1	241	30	37	17.8055
UGUUUUA	chr12:122992859-122993104(-)$1	245	63	70	13.1527
UGUUUUU	chr16:74685899-74686147(-)$1	248	70	77	17.8055
UGUUUUU	chr9:95040438-95040686(-)$1	248	97	104	17.8055
uguuguu	chr4:67616-67865(+)$1	249	94	101	13.4305
uguuuuu	chr7:64450306-64450558(-)$1	252	49	56	17.8055
UGUGUUU	chr15:69739093-69739351(+)$1	258	57	64	13.5694
UGUUUAU	chr15:44806658-44806969(+)$1	311	100	107	13.4305
UGUUUUU	chr6:36569457-36569697(+)$1	240	8	15	17.8055
ucuuuuu	chr12:72004742-72004985(-)$1	243	84	91	13.5694

#otherMatches

#Struct PSSM
[eeeee[	chr2:38804550-38804807(-)$1	257	47	54	13.0833
cc::::H	chr1:205057808-205058066(-)$1	258	58	65	13.5694
DDfffff	chr2:70451615-70451915(-)$1	300	139	146	13.7083
dd[ffff	chr8:64081813-64082112(+)$1	299	235	242	17.8055
f"""ddd	chr3:195785015-195785264(-)$1	249	98	105	17.8055
ddd::::	chr12:123665593-123665869(-)$1	276	97	104	17.8055
]dddd]b	chr3:9475403-9475658(+)$1	255	105	112	13.6388
7eeeee2	chr5:175782605-175782861(-)$1	256	100	107	13.5694
bbqqqqq	chr17:62499847-62500121(-)$1	274	107	114	13.4999
!!iiiii	chr2:135815596-135815844(+)$1	248	152	159	17.8055
iiiiiii	chr7:104715151-104715456(+)$1	305	124	131	17.8055
nbb22==	chr1:28834533-28834804(+)$1	271	157	164	17.8055
fffffff	chr3:141712236-141712536(-)$1	300	79	86	17.8055
ggggggg	chr7:104717296-104717551(+)$1	255	104	111	13.5694
cccdddd	chr11:62609007-62609214(-)$1	207	192	199	13.5694
=======	chr21:34994178-34994467(-)$1	289	189	196	13.6388
]ffffff	chr3:156870680-156870958(-)$1	278	208	215	13.7083
iiiiiii	chr11:14540413-14540689(-)$1	276	156	163	17.8055
bbggggg	chr7:104716366-104716648(+)$1	282	82	89	13.4305
dd[ccc"	chr7:116544362-116544609(+)$1	247	102	109	13.5694
=======	chr2:234754257-234754577(-)$1	320	225	232	17.8055
cffffff	chr6:160169265-160169540(+)$1	275	39	46	17.8055
DDYYBBZ	chr3:195789623-195789907(-)$1	284	250	257	17.8055
Fa[gggg	chr12:80238961-80239220(-)$1	259	9	16	13.4305
>>>>>>>	chr3:197023927-197024226(-)$1	299	108	115	13.5694
eee::::	chr16:66851256-66851498(-)$1	242	206	213	13.6388
{IIIIII	chr22:20114376-20114596(+)$1	220	89	96	17.8055
iiiiiii	chr12:56680125-56680396(-)$1	271	130	137	13.4999
FFMMMMD	chr1:24297887-24298134(-)$1	247	8	15	13.6388
xxxxxxx	chr3:50140373-50140636(+)$1	263	57	64	13.5694
dddd:::	chr4:83820752-83821012(-)$1	260	91	98	13.5694
d]eeeee	chr8:56985709-56985976(-)$1	267	75	82	13.5694
mmmmeee	chr3:150276056-150276354(+)$1	298	60	67	13.4305
hhhhhhh	chr12:123005800-123006089(-)$1	289	48	55	13.4305
eeee[bb	chr17:62499557-62499791(-)$1	234	85	92	13.7083
C::eeee	chr7:131099352-131099608(+)$1	256	6	13	13.5694
fccc$$$	chr6:4061810-4062086(+)$1	276	21	28	17.8055
:ffffff	chr12:110770363-110770657(+)$1	294	261	268	17.8055
eeeee::	chr17:25635509-25635765(+)$1	256	48	55	13.4305
JJJJJJJ	chr5:40834126-40834392(-)$1	266	239	246	17.8055
fffssss	chr5:130498048-130498343(-)$1	295	110	117	13.6388
dddnnnn	chr6:4064918-4065180(+)$1	262	12	19	17.8055
+++++++	chr18:13057609-13057862(+)$1	253	134	141	13.4305
dddddd3	chr18:33720983-33721226(+)$1	243	98	105	17.8055
c]ggggg	chr11:118963000-118963247(+)$1	247	99	106	17.8055
ZZJJJJJ	chr8:124381964-124382314(-)$1	350	310	317	13.7083
ffff333	chr8:22885120-22885373(-)$1	253	97	104	13.5694
GGGGGMM	chr21:45212463-45212756(+)$1	293	66	73	13.2222
:::::::	chr16:74685676-74685937(-)$1	261	244	251	13.1527
ggg:III	chr2:135815465-135815787(+)$1	322	283	290	17.8055
hhhhhh]	chr10:3821640-3821916(-)$1	276	135	142	17.8055
DDDD@@@	chr17:74731013-74731363(-)$1	350	306	313	13.3611
dddd!!b	chr17:40146828-40147124(-)$1	296	97	104	13.4305
eeee!!e	chr15:79178427-79178686(+)$1	259	18	25	13.3611
mbb8888	chr12:69236343-69236556(-)$1	213	178	185	13.6388
HHHHHHH	chr3:141640685-141640957(+)$1	272	76	83	13.4305
^^^^^^i	chr9:114155834-114156141(-)$1	307	221	228	13.6388
ffff[dd	chr2:170470834-170471100(+)$1	266	89	96	17.8055
KKFFFFF	chr3:180325427-180325691(+)$1	264	25	32	13.4305
fffff[g	chr6:43594517-43594826(-)$1	309	128	135	13.7083
+++++++	chr17:65715681-65715938(+)$1	257	51	58	13.6388
h[dddd%	chr8:124796572-124796848(+)$1	276	52	59	13.5694
=======	chr5:33448531-33448772(+)$1	241	30	37	17.8055
====777	chr12:122992859-122993104(-)$1	245	63	70	13.1527
wwwwwww	chr16:74685899-74686147(-)$1	248	70	77	17.8055
FFFFFKK	chr9:95040438-95040686(-)$1	248	97	104	17.8055
e!!dddd	chr4:67616-67865(+)$1	249	94	101	13.4305
^^^^^^^	chr7:64450306-64450558(-)$1	252	49	56	17.8055
::::::g	chr15:69739093-69739351(+)$1	258	57	64	13.5694
55dddd2	chr15:44806658-44806969(+)$1	311	100	107	13.4305
xxxxxxx	chr6:36569457-36569697(+)$1	240	8	15	17.8055
eeeee::	chr12:72004742-72004985(-)$1	243	84	91	13.5694

#DB
.(((((.	chr2:38804550-38804807(-)$1	1	47	54	13.0833
))....)	chr1:205057808-205058066(-)$1	1	58	65	13.5694
(((((((	chr2:70451615-70451915(-)$1	1	139	146	13.7083
((.((((	chr8:64081813-64082112(+)$1	1	235	242	17.8055
(...(((	chr3:195785015-195785264(-)$1	1	98	105	17.8055
)))....	chr12:123665593-123665869(-)$1	1	97	104	17.8055
.)))).)	chr3:9475403-9475658(+)$1	1	105	112	13.6388
.))))).	chr5:175782605-175782861(-)$1	1	100	107	13.5694
((.....	chr17:62499847-62500121(-)$1	1	107	114	13.4999
..(((((	chr2:135815596-135815844(+)$1	1	152	159	17.8055
)))))))	chr7:104715151-104715456(+)$1	1	124	131	17.8055
.))..))	chr1:28834533-28834804(+)$1	1	157	164	17.8055
)))))))	chr3:141712236-141712536(-)$1	1	79	86	17.8055
(((((((	chr7:104717296-104717551(+)$1	1	104	111	13.5694
)))))))	chr11:62609007-62609214(-)$1	1	192	199	13.5694
)))))))	chr21:34994178-34994467(-)$1	1	189	196	13.6388
.))))))	chr3:156870680-156870958(-)$1	1	208	215	13.7083
(((((((	chr11:14540413-14540689(-)$1	1	156	163	17.8055
(((((((	chr7:104716366-104716648(+)$1	1	82	89	13.4305
((.(((.	chr7:116544362-116544609(+)$1	1	102	109	13.5694
)))))))	chr2:234754257-234754577(-)$1	1	225	232	17.8055
(((((((	chr6:160169265-160169540(+)$1	1	39	46	17.8055
))..)).	chr3:195789623-195789907(-)$1	1	250	257	17.8055
((.((((	chr12:80238961-80239220(-)$1	1	9	16	13.4305
.......	chr3:197023927-197024226(-)$1	1	108	115	13.5694
)))....	chr16:66851256-66851498(-)$1	1	206	213	13.6388
.((((((	chr22:20114376-20114596(+)$1	1	89	96	17.8055
(((((((	chr12:56680125-56680396(-)$1	1	130	137	13.4999
((....(	chr1:24297887-24298134(-)$1	1	8	15	13.6388
.......	chr3:50140373-50140636(+)$1	1	57	64	13.5694
))))...	chr4:83820752-83821012(-)$1	1	91	98	13.5694
).)))))	chr8:56985709-56985976(-)$1	1	75	82	13.5694
....)))	chr3:150276056-150276354(+)$1	1	60	67	13.4305
)))))))	chr12:123005800-123006089(-)$1	1	48	55	13.4305
((((.((	chr17:62499557-62499791(-)$1	1	85	92	13.7083
(..((((	chr7:131099352-131099608(+)$1	1	6	13	13.5694
((((...	chr6:4061810-4062086(+)$1	1	21	28	17.8055
.((((((	chr12:110770363-110770657(+)$1	1	261	268	17.8055
)))))..	chr17:25635509-25635765(+)$1	1	48	55	13.4305
)))))))	chr5:40834126-40834392(-)$1	1	239	246	17.8055
(((....	chr5:130498048-130498343(-)$1	1	110	117	13.6388
(((....	chr6:4064918-4065180(+)$1	1	12	19	17.8055
.......	chr18:13057609-13057862(+)$1	1	134	141	13.4305
)))))).	chr18:33720983-33721226(+)$1	1	98	105	17.8055
).)))))	chr11:118963000-118963247(+)$1	1	99	106	17.8055
..)))))	chr8:124381964-124382314(-)$1	1	310	317	13.7083
))))...	chr8:22885120-22885373(-)$1	1	97	104	13.5694
(((((..	chr21:45212463-45212756(+)$1	1	66	73	13.2222
.......	chr16:74685676-74685937(-)$1	1	244	251	13.1527
))).)))	chr2:135815465-135815787(+)$1	1	283	290	17.8055
)))))).	chr10:3821640-3821916(-)$1	1	135	142	17.8055
))))...	chr17:74731013-74731363(-)$1	1	306	313	13.3611
((((..(	chr17:40146828-40147124(-)$1	1	97	104	13.4305
((((..(	chr15:79178427-79178686(+)$1	1	18	25	13.3611
.))....	chr12:69236343-69236556(-)$1	1	178	185	13.6388
(((((((	chr3:141640685-141640957(+)$1	1	76	83	13.4305
......)	chr9:114155834-114156141(-)$1	1	221	228	13.6388
((((.((	chr2:170470834-170471100(+)$1	1	89	96	17.8055
..(((((	chr3:180325427-180325691(+)$1	1	25	32	13.4305
(((((.(	chr6:43594517-43594826(-)$1	1	128	135	13.7083
.......	chr17:65715681-65715938(+)$1	1	51	58	13.6388
(.((((.	chr8:124796572-124796848(+)$1	1	52	59	13.5694
(((((((	chr5:33448531-33448772(+)$1	1	30	37	17.8055
))))...	chr12:122992859-122993104(-)$1	1	63	70	13.1527
.......	chr16:74685899-74686147(-)$1	1	70	77	17.8055
(((((..	chr9:95040438-95040686(-)$1	1	97	104	17.8055
(..((((	chr4:67616-67865(+)$1	1	94	101	13.4305
.......	chr7:64450306-64450558(-)$1	1	49	56	17.8055
......(	chr15:69739093-69739351(+)$1	1	57	64	13.5694
..)))).	chr15:44806658-44806969(+)$1	1	100	107	13.4305
.......	chr6:36569457-36569697(+)$1	1	8	15	17.8055
)))))..	chr12:72004742-72004985(-)$1	1	84	91	13.5694

#PSSM
U : 0.87	A : 0.05	u : 0.05	C : 0.01	
G : 0.86	C : 0.04	g : 0.04	U : 0.02	A : 0.01	c : 0.01	
U : 0.83	C : 0.05	u : 0.05	A : 0.04	G : 0.01	
U : 0.81	u : 0.06	A : 0.05	G : 0.04	C : 0.01	
U : 0.84	C : 0.05	u : 0.05	G : 0.01	A : 0.01	g : 0.01	
U : 0.83	C : 0.06	u : 0.05	G : 0.01	g : 0.01	A : 0.01	
U : 0.88	u : 0.06	A : 0.02	G : 0.01	

#score	1084.6388888888869
#seq	72
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_UTR_m3_run2.nuc.txt

#NT
ccuccgcuuc	chr11:2160031-2160246(-)$1	215	186	196	18.2692
ACUCGGCCUC	chr11:2151038-2151253(-)$1	215	180	190	19.2307
gcccggccuc	chr7:917488-917737(+)$1	249	3	13	15.5769
ACUCGGCCUC	chr11:2151032-2151236(-)$1	204	163	173	19.2307
ccuccgcuuc	chr11:2160005-2160211(-)$1	206	151	161	18.2692
CCCCGGCCCC	chr12:7311117-7311439(+)$1	322	150	160	15.3846
ccucggccuc	chr12:51324385-51324647(+)$1	262	227	237	22.4999
ccucggccuc	chrX:79927754-79928018(-)$1	264	141	151	22.4999
CCUGCGCCUC	chr17:80708882-80709160(+)$1	278	192	202	16.9230
ccucagccuc	chr1:160965395-160965656(-)$1	261	210	220	21.0576
ccucagccuc	chr22:41677944-41678229(-)$1	285	19	29	21.0576
ACUCGGCCUC	chr11:2151001-2151207(-)$1	206	134	144	19.2307
ccccggcccc	chr11:2160393-2160610(-)$1	217	28	38	15.3846
ccucagccuc	chr4:152024372-152024655(+)$1	283	146	156	21.0576
ACUCGGCCUC	chr11:2151036-2151238(-)$1	202	165	175	19.2307
ccuccgcuuc	chr11:2159908-2160138(-)$1	230	78	88	18.2692
ucuuggccuc	chr17:41370069-41370324(+)$1	255	81	91	14.1346
ccuccgcuuc	chr11:2159938-2160156(-)$1	218	96	106	18.2692
ccuccgcuuc	chr11:2159998-2160205(-)$1	207	145	155	18.2692
ccucucccuc	chr20:251451-251708(-)$1	257	59	69	17.3076
ccucagccuc	chr4:2841390-2841644(+)$1	254	17	27	21.0576
CCUCUCCCUC	chr11:2151296-2151500(-)$1	204	178	188	17.3076
ccucagccuc	chr3:45721893-45722198(+)$1	305	24	34	21.0576
ACUCGGCCUC	chr11:2151024-2151228(-)$1	204	155	165	19.2307
ccuccuccuc	chrX:133930195-133930463(-)$1	268	46	56	17.7884
ccuccgcuuc	chr11:2160011-2160214(-)$1	203	154	164	18.2692
ccccggcccc	chr11:2160428-2160662(-)$1	234	80	90	15.3846
gcucgcccuc	chr2:172016842-172017094(-)$1	252	54	64	15.4807
ACUCGGCCUC	chr11:2151016-2151224(-)$1	208	151	161	19.2307
ccuccgcuuc	chr11:2159991-2160198(-)$1	207	138	148	18.2692
CCUCGUCCCC	chr19:896534-896787(-)$1	253	116	126	14.9038
ccucucccuc	chr21:40177605-40177939(+)$1	334	17	27	17.3076
ACUCGGCCUC	chr11:2150859-2151078(-)$1	219	5	15	19.2307
ccucagccuc	chr19:45405372-45405640(+)$1	268	200	210	21.0576
ccuccgcuuc	chr11:2159965-2160171(-)$1	206	111	121	18.2692
ccucgcccuc	chr11:2159803-2160027(-)$1	224	211	221	19.1346
CCUCAGCCUG	chr22:39218300-39218624(-)$1	324	79	89	16.2499
ccucggccuc	chr2:128951015-128951259(+)$1	244	65	75	22.4999
ccucggccuc	chr1:204521594-204521841(+)$1	247	103	113	22.4999
CCCCGCCCUC	chr17:7154815-7155081(-)$1	266	3	13	15.8653
GCCCAGCCUC	chr15:74005904-74006214(+)$1	310	113	123	14.1346
ccucggccuc	chr3:197611168-197611533(+)$1	365	107	117	22.4999
cccccgccUC	chr11:2160371-2160577(-)$1	206	18	28	18.2692
CCGCCGCCUC	chr11:2160225-2160431(-)$1	206	25	35	17.6923
CCGCCGCCUC	chr11:2160231-2160449(-)$1	218	43	53	17.6923
CCUCUCCCUC	chr1:160061115-160061385(-)$1	270	49	59	17.3076
ccuccgcuuc	chr11:2160016-2160223(-)$1	207	163	173	18.2692
ccuuggccuc	chr19:18477507-18477740(+)$1	233	21	31	17.9807
CCCCGGCCCC	chr11:2159856-2160095(-)$1	239	8	18	15.3846
CCUCGGCCCC	chr12:57824511-57824808(-)$1	297	158	168	18.6538
ccucagccuc	chr4:57326134-57326395(+)$1	261	34	44	21.0576

#otherMatches

#Struct PSSM
F{DDDDKKJJ	chr22:39217852-39218125(-)$1	273	71	81	16.9230
::::::::::	chr11:2160031-2160246(-)$1	215	186	196	18.2692
:IIIIIIIII	chr11:2151038-2151253(-)$1	215	180	190	19.2307
:::DDDD:::	chr7:917488-917737(+)$1	249	3	13	15.5769
:IIIIIIIII	chr11:2151032-2151236(-)$1	204	163	173	19.2307
~CCC:bbqqq	chr11:2160005-2160211(-)$1	206	151	161	18.2692
hh!!dddd[a	chr12:7311117-7311439(+)$1	322	150	160	15.3846
oooocccDDD	chr12:51324385-51324647(+)$1	262	227	237	22.4999
::::DDDDee	chrX:79927754-79928018(-)$1	264	141	151	22.4999
llleeeeecc	chr17:80708882-80709160(+)$1	278	192	202	16.9230
=ffffff!!a	chr1:160965395-160965656(-)$1	261	210	220	21.0576
DCCCEEEEE:	chr22:41677944-41678229(-)$1	285	19	29	21.0576
####ccc!!e	chr11:2151001-2151207(-)$1	206	134	144	19.2307
"""eeeeess	chr11:2160393-2160610(-)$1	217	28	38	15.3846
hh]ccc:CCC	chr4:152024372-152024655(+)$1	283	146	156	21.0576
:IIIIIIIII	chr11:2151036-2151238(-)$1	202	165	175	19.2307
::::::::::	chr11:2159908-2160138(-)$1	230	78	88	18.2692
&&&&dddd!!	chr17:41370069-41370324(+)$1	255	81	91	14.1346
((((cccooo	chr11:2159938-2160156(-)$1	218	96	106	18.2692
@@@@@@@@@C	chr11:2159998-2160205(-)$1	207	145	155	18.2692
::::::::::	chr20:251451-251708(-)$1	257	59	69	17.3076
%eeeeemmmm	chr4:2841390-2841644(+)$1	254	17	27	21.0576
JJJJJJJJJJ	chr11:2151296-2151500(-)$1	204	178	188	17.3076
c333eeeee:	chr3:45721893-45722198(+)$1	305	24	34	21.0576
ZCCCZZZEEE	chr11:2151024-2151228(-)$1	204	155	165	19.2307
OOCCCMMMMD	chrX:133930195-133930463(-)$1	268	46	56	17.7884
DDDD::::::	chr11:2160011-2160214(-)$1	203	154	164	18.2692
####bbmmmm	chr11:2160428-2160662(-)$1	234	80	90	15.3846
dddppppppp	chr2:172016842-172017094(-)$1	252	54	64	15.4807
}EEEEE::::	chr11:2151016-2151224(-)$1	208	151	161	19.2307
@@@@@@@@@C	chr11:2159991-2160198(-)$1	207	138	148	18.2692
::::JJJJJJ	chr19:896534-896787(-)$1	253	116	126	14.9038
^^^^^^^^^^	chr21:40177605-40177939(+)$1	334	17	27	17.3076
HHHHccc!!e	chr11:2150859-2151078(-)$1	219	5	15	19.2307
:eeeeemmmm	chr19:45405372-45405640(+)$1	268	200	210	21.0576
((((cccooo	chr11:2159965-2160171(-)$1	206	111	121	18.2692
::::::::::	chr11:2159803-2160027(-)$1	224	211	221	19.1346
iiiiiccccc	chr22:39218300-39218624(-)$1	324	79	89	16.2499
EEE{DDDDee	chr2:128951015-128951259(+)$1	244	65	75	22.4999
4444gggggg	chr1:204521594-204521841(+)$1	247	103	113	22.4999
::::::::::	chr17:7154815-7155081(-)$1	266	3	13	15.8653
cclllccc::	chr15:74005904-74006214(+)$1	310	113	123	14.1346
ddd]ddddee	chr3:197611168-197611533(+)$1	365	107	117	22.4999
C::::cccmm	chr11:2160371-2160577(-)$1	206	18	28	18.2692
&&========	chr11:2160225-2160431(-)$1	206	25	35	17.6923
&&========	chr11:2160231-2160449(-)$1	218	43	53	17.6923
tttttttttt	chr1:160061115-160061385(-)$1	270	49	59	17.3076
@@@@@@@@@C	chr11:2160016-2160223(-)$1	207	163	173	18.2692
JJJJJJJJJJ	chr19:18477507-18477740(+)$1	233	21	31	17.9807
OOODDDD:::	chr11:2159856-2160095(-)$1	239	8	18	15.3846
Cggggggg!!	chr12:57824511-57824808(-)$1	297	158	168	18.6538
::::::::::	chr4:57326134-57326395(+)$1	261	34	44	21.0576

#DB
(.((((..((	chr22:39217852-39218125(-)$1	1	71	81	16.9230
..........	chr11:2160031-2160246(-)$1	1	186	196	18.2692
.)))))))))	chr11:2151038-2151253(-)$1	1	180	190	19.2307
...((((...	chr7:917488-917737(+)$1	1	3	13	15.5769
.)))))))))	chr11:2151032-2151236(-)$1	1	163	173	19.2307
.))).((...	chr11:2160005-2160211(-)$1	1	151	161	18.2692
((..((((.(	chr12:7311117-7311439(+)$1	1	150	160	15.3846
....))))))	chr12:51324385-51324647(+)$1	1	227	237	22.4999
....((((((	chrX:79927754-79928018(-)$1	1	141	151	22.4999
...)))))))	chr17:80708882-80709160(+)$1	1	192	202	16.9230
)((((((..(	chr1:160965395-160965656(-)$1	1	210	220	21.0576
(((((((((.	chr22:41677944-41678229(-)$1	1	19	29	21.0576
....(((..(	chr11:2151001-2151207(-)$1	1	134	144	19.2307
...(((((..	chr11:2160393-2160610(-)$1	1	28	38	15.3846
)).))).)))	chr4:152024372-152024655(+)$1	1	146	156	21.0576
.)))))))))	chr11:2151036-2151238(-)$1	1	165	175	19.2307
..........	chr11:2159908-2160138(-)$1	1	78	88	18.2692
....((((..	chr17:41370069-41370324(+)$1	1	81	91	14.1346
....(((...	chr11:2159938-2160156(-)$1	1	96	106	18.2692
.........)	chr11:2159998-2160205(-)$1	1	145	155	18.2692
..........	chr20:251451-251708(-)$1	1	59	69	17.3076
.(((((....	chr4:2841390-2841644(+)$1	1	17	27	21.0576
))))))))))	chr11:2151296-2151500(-)$1	1	178	188	17.3076
)...))))).	chr3:45721893-45722198(+)$1	1	24	34	21.0576
.)))...)))	chr11:2151024-2151228(-)$1	1	155	165	19.2307
..(((....(	chrX:133930195-133930463(-)$1	1	46	56	17.7884
))))......	chr11:2160011-2160214(-)$1	1	154	164	18.2692
....((....	chr11:2160428-2160662(-)$1	1	80	90	15.3846
(((.......	chr2:172016842-172017094(-)$1	1	54	64	15.4807
.)))))....	chr11:2151016-2151224(-)$1	1	151	161	19.2307
.........)	chr11:2159991-2160198(-)$1	1	138	148	18.2692
....((((((	chr19:896534-896787(-)$1	1	116	126	14.9038
..........	chr21:40177605-40177939(+)$1	1	17	27	17.3076
(((((((..(	chr11:2150859-2151078(-)$1	1	5	15	19.2307
.(((((....	chr19:45405372-45405640(+)$1	1	200	210	21.0576
....(((...	chr11:2159965-2160171(-)$1	1	111	121	18.2692
..........	chr11:2159803-2160027(-)$1	1	211	221	19.1346
)))))(((((	chr22:39218300-39218624(-)$1	1	79	89	16.2499
(((.((((((	chr2:128951015-128951259(+)$1	1	65	75	22.4999
....))))))	chr1:204521594-204521841(+)$1	1	103	113	22.4999
..........	chr17:7154815-7155081(-)$1	1	3	13	15.8653
((...)))..	chr15:74005904-74006214(+)$1	1	113	123	14.1346
))).))))))	chr3:197611168-197611533(+)$1	1	107	117	22.4999
(....(((..	chr11:2160371-2160577(-)$1	1	18	28	18.2692
..((((((((	chr11:2160225-2160431(-)$1	1	25	35	17.6923
..((((((((	chr11:2160231-2160449(-)$1	1	43	53	17.6923
..........	chr1:160061115-160061385(-)$1	1	49	59	17.3076
.........)	chr11:2160016-2160223(-)$1	1	163	173	18.2692
((((((((((	chr19:18477507-18477740(+)$1	1	21	31	17.9807
...((((...	chr11:2159856-2160095(-)$1	1	8	18	15.3846
((((((((..	chr12:57824511-57824808(-)$1	1	158	168	18.6538
..........	chr4:57326134-57326395(+)$1	1	34	44	21.0576

#PSSM
c : 0.55	C : 0.23	A : 0.13	g : 0.03	u : 0.01	G : 0.01	
c : 0.61	C : 0.38	
u : 0.53	U : 0.26	c : 0.07	C : 0.07	G : 0.03	
c : 0.57	C : 0.36	u : 0.03	G : 0.01	
G : 0.23	g : 0.23	c : 0.21	a : 0.13	U : 0.05	C : 0.05	u : 0.03	A : 0.03	
g : 0.51	G : 0.28	c : 0.07	C : 0.05	U : 0.03	u : 0.01	
c : 0.61	C : 0.38	
c : 0.44	C : 0.38	u : 0.17	
u : 0.55	U : 0.32	C : 0.07	c : 0.03	
c : 0.59	C : 0.38	G : 0.01	

#score	957.1153846153843
#seq	52
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_CDS_m3_run2.nuc.txt

#NT
ggagggagug	chr7:100136946-100137227(+)$1	281	6	16	19.4565
ggaggggggg	chr4:667804-668112(+)$1	308	12	22	19.7826
GGCGGGAGGG	chr15:35271713-35271985(-)$1	272	118	128	22.2826
GGGAGGAGGG	chr12:123464867-123465168(+)$1	301	89	99	18.2608
GGUGGGUGGG	chr17:3559777-3560050(-)$1	273	87	97	18.6956
GGAGGCAGGG	chr19:56133017-56133288(-)$1	271	248	258	19.3478
GCAGGGAGGG	chr11:208941-209281(+)$1	340	61	71	19.6739
GGAGGGAGGG	chr17:1465750-1466015(-)$1	265	213	223	23.9130
GGAGGGAGGG	chr19:55998119-55998406(+)$1	287	233	243	23.9130
guggggaggg	chr21:47565373-47565653(-)$1	280	9	19	18.4782
GGGGGGAGGG	chr17:58469168-58469454(-)$1	286	216	226	22.7173
ggcgggAGGG	chr16:29817823-29818170(-)$1	347	301	311	22.2826
GGAGGGAGCG	chr11:61197165-61197469(-)$1	304	249	259	19.6739
GUGGGGAGGG	chr19:42752575-42752831(-)$1	256	108	118	18.4782
GGUGGGCGGG	chr4:1217192-1217468(-)$1	276	1	11	18.6956
ggugggaggc	chr12:122185998-122186340(+)$1	342	4	14	18.4782
GGAGGGAGGG	chr17:55334358-55334565(+)$1	207	146	156	23.9130
ggggGGAGGG	chr9:96026018-96026303(+)$1	285	92	102	22.7173
ggugggaugg	chr6:48036284-48036526(-)$1	242	89	99	17.8260
ggagggaggc	chr7:65338182-65338467(+)$1	285	145	155	19.7826
ggugugaggg	chr17:78346837-78347145(-)$1	308	18	28	17.9347
GAAGGGAGGG	chr4:52709698-52709958(+)$1	260	0	10	19.5652
GGAGGAAGGG	chr1:38273938-38274197(+)$1	259	196	206	19.4565
GGUGGGAGGG	chr15:67391093-67391391(+)$1	298	99	109	22.6086
ggagggaggu	chr10:104503716-104503992(+)$1	276	47	57	19.5652
GGAGGGAGGG	chr14:24901148-24901446(+)$1	298	89	99	23.9130
GGAGGAAGGG	chr16:447154-447376(+)$1	222	196	206	19.4565
GGGGGGAGGG	chr16:88798214-88798471(+)$1	257	146	156	22.7173
GGUGGGCGGG	chr20:62371220-62371504(+)$1	284	183	193	18.6956
GGCGGGAGGC	chr16:22019511-22019740(+)$1	229	48	58	18.1521
GCUGGGAGGG	chr11:2156570-2156779(-)$1	209	190	200	18.3695
GGCGGGUGGG	chr19:1465588-1465868(-)$1	280	98	108	18.3695
GGAGGGCGGG	chr19:49843454-49843707(-)$1	253	110	120	19.9999
GGUGGGAGGG	chr19:18653565-18653856(-)$1	291	58	68	22.6086
ugggggaggg	chr19:10222219-10222520(+)$1	301	121	131	17.9347
GGGGGGAGGG	chr16:2029113-2029369(+)$1	256	83	93	22.7173
GGAGGGAGGG	chr22:51153099-51153424(+)$1	325	130	140	23.9130
GGAGGGAGCG	chr11:61197014-61197365(-)$1	351	145	155	19.6739
ggcgggagcg	chr1:976401-976672(+)$1	271	12	22	18.0434
GGAGAGAGGG	chr17:34171479-34171733(+)$1	254	24	34	19.2391
ggaaggaggg	chr17:46137115-46137394(+)$1	279	251	261	19.4565
ggagggaggg	chr17:78178894-78179161(-)$1	267	103	113	23.9130
GGGGGGAGGG	chr17:58469092-58469368(-)$1	276	130	140	22.7173
GGACGGAGGG	chr4:2814103-2814348(+)$1	245	66	76	19.3478
ggcggguggg	chr7:766827-767136(-)$1	309	23	33	18.3695

#otherMatches

#Struct PSSM
bb[dddd[dd	chr9:139756689-139756959(-)$1	270	109	119	18.3695
EECCCKKCCC	chr7:100136946-100137227(+)$1	281	6	16	19.4565
CCLLLGGGGG	chr4:667804-668112(+)$1	308	12	22	19.7826
ii:bbfffff	chr15:35271713-35271985(-)$1	272	118	128	22.2826
==========	chr12:123464867-123465168(+)$1	301	89	99	18.2608
eeeeeeeee%	chr17:3559777-3560050(-)$1	273	87	97	18.6956
::::FFFFFF	chr19:56133017-56133288(-)$1	271	248	258	19.3478
JJJJJJJJJJ	chr11:208941-209281(+)$1	340	61	71	19.6739
wwwwwwwwwb	chr17:1465750-1466015(-)$1	265	213	223	23.9130
bb!!a!!ccc	chr19:55998119-55998406(+)$1	287	233	243	23.9130
IIIIII{FFF	chr21:47565373-47565653(-)$1	280	9	19	18.4782
}BB|||||||	chr17:58469168-58469454(-)$1	286	216	226	22.7173
:::CCC}CCC	chr16:29817823-29818170(-)$1	347	301	311	22.2826
uuuuuuuuuu	chr11:61197165-61197469(-)$1	304	249	259	19.6739
[gggggggee	chr19:42752575-42752831(-)$1	256	108	118	18.4782
cc[iiiiiii	chr4:1217192-1217468(-)$1	276	1	11	18.6956
FFFFFFEEEE	chr12:122185998-122186340(+)$1	342	4	14	18.4782
EEEE======	chr17:55334358-55334565(+)$1	207	146	156	23.9130
ddd[bb"""g	chr9:96026018-96026303(+)$1	285	92	102	22.7173
:dddd[ccc"	chr6:48036284-48036526(-)$1	242	89	99	17.8260
E:::::::ff	chr7:65338182-65338467(+)$1	285	145	155	19.7826
::::::::::	chr17:78346837-78347145(-)$1	308	18	28	17.9347
::::::::::	chr4:52709698-52709958(+)$1	260	0	10	19.5652
!cccpppppp	chr1:38273938-38274197(+)$1	259	196	206	19.4565
iiiiiiIIII	chr15:67391093-67391391(+)$1	298	99	109	22.6086
::::::::::	chr10:104503716-104503992(+)$1	276	47	57	19.5652
cc:FFFFFFM	chr14:24901148-24901446(+)$1	298	89	99	23.9130
AYYCCCYYEE	chr16:447154-447376(+)$1	222	196	206	19.4565
d!!ccc[eee	chr16:88798214-88798471(+)$1	257	146	156	22.7173
h]eeeeefff	chr20:62371220-62371504(+)$1	284	183	193	18.6956
sssssssssd	chr16:22019511-22019740(+)$1	229	48	58	18.1521
bbIIIIIIII	chr11:2156570-2156779(-)$1	209	190	200	18.3695
gggggg]ddd	chr19:1465588-1465868(-)$1	280	98	108	18.3695
eeeee[a[ee	chr19:49843454-49843707(-)$1	253	110	120	19.9999
^^^^^^^^^^	chr19:18653565-18653856(-)$1	291	58	68	22.6086
b[bbpppppp	chr19:10222219-10222520(+)$1	301	121	131	17.9347
gggg"""eee	chr16:2029113-2029369(+)$1	256	83	93	22.7173
ggBB{AKKBB	chr22:51153099-51153424(+)$1	325	130	140	23.9130
uuuuuuuuuu	chr11:61197014-61197365(-)$1	351	145	155	19.6739
FFFFFF{FFF	chr1:976401-976672(+)$1	271	12	22	18.0434
{A:::::bb!	chr17:34171479-34171733(+)$1	254	24	34	19.2391
EEEEE:::::	chr17:46137115-46137394(+)$1	279	251	261	19.4565
""ffffffa"	chr17:78178894-78179161(-)$1	267	103	113	23.9130
>>>>>>>>>f	chr17:58469092-58469368(-)$1	276	130	140	22.7173
ncccGGGGGG	chr4:2814103-2814348(+)$1	245	66	76	19.3478
DDDDKKBB{A	chr7:766827-767136(-)$1	309	23	33	18.3695

#DB
((.((((.((	chr9:139756689-139756959(-)$1	1	109	119	18.3695
(((((..(((	chr7:100136946-100137227(+)$1	1	6	16	19.4565
((...(((((	chr4:667804-668112(+)$1	1	12	22	19.7826
)).(((((((	chr15:35271713-35271985(-)$1	1	118	128	22.2826
((((((((((	chr12:123464867-123465168(+)$1	1	89	99	18.2608
(((((((((.	chr17:3559777-3560050(-)$1	1	87	97	18.6956
....))))))	chr19:56133017-56133288(-)$1	1	248	258	19.3478
((((((((((	chr11:208941-209281(+)$1	1	61	71	19.6739
.........)	chr17:1465750-1466015(-)$1	1	213	223	23.9130
((..(..(((	chr19:55998119-55998406(+)$1	1	233	243	23.9130
((((((.(((	chr21:47565373-47565653(-)$1	1	9	19	18.4782
.)).......	chr17:58469168-58469454(-)$1	1	216	226	22.7173
...))).)))	chr16:29817823-29818170(-)$1	1	301	311	22.2826
..........	chr11:61197165-61197469(-)$1	1	249	259	19.6739
.(((((((((	chr19:42752575-42752831(-)$1	1	108	118	18.4782
((.(((((((	chr4:1217192-1217468(-)$1	1	1	11	18.6956
((((((((((	chr12:122185998-122186340(+)$1	1	4	14	18.4782
))))((((((	chr17:55334358-55334565(+)$1	1	146	156	23.9130
(((.((...(	chr9:96026018-96026303(+)$1	1	92	102	22.7173
.((((.(((.	chr6:48036284-48036526(-)$1	1	89	99	17.8260
(.......((	chr7:65338182-65338467(+)$1	1	145	155	19.7826
..........	chr17:78346837-78347145(-)$1	1	18	28	17.9347
..........	chr4:52709698-52709958(+)$1	1	0	10	19.5652
.(((......	chr1:38273938-38274197(+)$1	1	196	206	19.4565
))))))((((	chr15:67391093-67391391(+)$1	1	99	109	22.6086
..........	chr10:104503716-104503992(+)$1	1	47	57	19.5652
)).((((((.	chr14:24901148-24901446(+)$1	1	89	99	23.9130
)..)))..))	chr16:447154-447376(+)$1	1	196	206	19.4565
(..(((.(((	chr16:88798214-88798471(+)$1	1	146	156	22.7173
).)))))(((	chr20:62371220-62371504(+)$1	1	183	193	18.6956
.........)	chr16:22019511-22019740(+)$1	1	48	58	18.1521
))))))))))	chr11:2156570-2156779(-)$1	1	190	200	18.3695
)))))).)))	chr19:1465588-1465868(-)$1	1	98	108	18.3695
(((((.(.((	chr19:49843454-49843707(-)$1	1	110	120	19.9999
..........	chr19:18653565-18653856(-)$1	1	58	68	22.6086
(.((......	chr19:10222219-10222520(+)$1	1	121	131	17.9347
((((...(((	chr16:2029113-2029369(+)$1	1	83	93	22.7173
))((.(..((	chr22:51153099-51153424(+)$1	1	130	140	23.9130
..........	chr11:61197014-61197365(-)$1	1	145	155	19.6739
((((((.(((	chr1:976401-976672(+)$1	1	12	22	18.0434
.(.....((.	chr17:34171479-34171733(+)$1	1	24	34	19.2391
))))).....	chr17:46137115-46137394(+)$1	1	251	261	19.4565
..(((((((.	chr17:78178894-78179161(-)$1	1	103	113	23.9130
.........)	chr17:58469092-58469368(-)$1	1	130	140	22.7173
.)))((((((	chr4:2814103-2814348(+)$1	1	66	76	19.3478
((((..((.(	chr7:766827-767136(-)$1	1	23	33	18.3695

#PSSM
G : 0.67	g : 0.30	u : 0.02	
G : 0.58	g : 0.30	C : 0.04	u : 0.02	U : 0.02	A : 0.02	
A : 0.32	G : 0.15	a : 0.13	U : 0.13	C : 0.06	g : 0.06	c : 0.06	u : 0.06	
G : 0.63	g : 0.30	A : 0.02	a : 0.02	C : 0.02	
G : 0.67	g : 0.28	u : 0.02	A : 0.02	
G : 0.63	g : 0.30	A : 0.04	C : 0.02	
A : 0.60	a : 0.23	C : 0.06	U : 0.04	g : 0.02	u : 0.02	
G : 0.71	g : 0.26	u : 0.02	
G : 0.67	g : 0.23	C : 0.04	u : 0.02	c : 0.02	
G : 0.67	g : 0.21	c : 0.04	A : 0.02	u : 0.02	C : 0.02	

#score	933.4782608695642
#seq	46
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_UTR_m2_run1.nuc.txt

#NT
CCGCUCccaccgcc	chr6:34212678-34212944(+)$1	266	47	61	20.6585
gcccgcccgccgcc	chr16:88870116-88870414(+)$1	298	277	291	28.5853
ucccgcccgccccu	chr12:53845991-53846259(+)$1	268	78	92	22.1219
ccgcgcccgccccg	chr1:156721254-156721539(-)$1	285	127	141	21.0243
cccgggccgccgcc	chr19:6424621-6424892(-)$1	271	210	224	22.7317
GCCCGCACGCCGCC	chr9:100745555-100745887(+)$1	332	131	145	24.3170
CCGCGCccgccgcc	chr20:57466518-57466792(+)$1	274	210	224	27.2439
CGCCGCCCGCUGCC	chr11:2160295-2160563(-)$1	268	79	93	23.2195
GCCCGCGCGCCGCU	chr1:26798903-26799202(+)$1	299	138	152	23.3414
gcccgcccgcggcc	chr8:101733876-101734160(-)$1	284	59	73	24.4390
CGCCGCCCGCUGCC	chr11:2160379-2160642(-)$1	263	158	172	23.2195
GCCAGCCCGCCGCC	chr16:30077030-30077350(+)$1	320	161	175	24.0731
cccggcccggcgcg	chr1:156721115-156721397(-)$1	282	136	150	19.3170
ugccgcccgccgcu	chr19:1241671-1242017(+)$1	346	161	175	22.4878
ccccgcccgccgcg	chr11:64001965-64002310(+)$1	345	229	243	28.4634
CCCCGCGCUCCGCC	chr17:49243664-49243956(+)$1	292	82	96	23.0975
gcccgcccgccgcu	chr2:70314566-70314898(+)$1	332	93	107	27.2439
CCCCUGCCACCGCC	chr2:97541639-97542011(-)$1	372	130	144	20.5365
CCGCUCccaccgcc	chr6:34212609-34212864(+)$1	255	116	130	20.6585
CCCCGCCAACCGCC	chr1:32479388-32479656(+)$1	268	134	148	22.6097
CCCCGCGCGCCUCU	chr12:6875608-6875935(+)$1	327	79	93	21.2682
ccccgccggccgcu	chr16:58231517-58231871(-)$1	354	4	18	24.9268
GCCCUCCCGCCGCC	chr6:37138029-37138340(+)$1	311	114	128	25.5365
CUCCGGCCGCCGCU	chrX:152953477-152953693(+)$1	216	125	139	22.0000
cgccgcccgccgcu	chr20:49547417-49547704(-)$1	287	129	143	25.6585
CCCCGAGCGCCGCU	chr13:45915174-45915417(-)$1	243	122	136	21.3902
CCGCUCCCGCUGCC	chr6:26056513-26056763(-)$1	250	126	140	20.4146
CCGCGCccgccgcc	chr20:57466603-57466870(+)$1	267	125	139	27.2439
CCCCGUCCGCCGCU	chr12:120972416-120972682(+)$1	266	19	33	25.2926
gcccgcccgccgcc	chrX:152953601-152953886(+)$1	285	271	285	28.5853
cccccgccgccgcu	chr11:61734777-61735183(-)$1	406	221	235	22.0000
CCCCGCCGGCAGCC	chr8:101733773-101734042(-)$1	269	29	43	22.1219
gcccgcccgccgcc	chr11:2398561-2398877(+)$1	316	159	173	28.5853
ccccuccccccgcc	chr6:37787506-37787819(+)$1	313	101	115	23.7073
CCCCGCCCUCCGUG	chr20:62152052-62152310(+)$1	258	3	17	20.0487
CCCCGCCCGCUCCG	chr15:75230176-75230486(-)$1	310	54	68	20.6585
CUCCGCCCGCCUCA	chr11:810132-810381(+)$1	249	86	100	20.0487
CUCCGGCCGCCGCU	chrX:152953540-152953801(+)$1	261	62	76	22.0000
gcccgcccuccgcc	chr12:53845876-53846170(+)$1	294	65	79	24.9268
CCACACCCGCCGCC	chr7:5570061-5570331(-)$1	270	161	175	22.8536

#otherMatches

#Struct PSSM
bboooooobbgggg	chr6:37137955-37138229(+)$1	274	188	202	25.5365
ddd]eeeee:::::	chr6:34212678-34212944(+)$1	266	47	61	20.6585
EEEEYYBB}JJJJJ	chr16:88870116-88870414(+)$1	298	277	291	28.5853
3eeeee22bb::::	chr12:53845991-53846259(+)$1	268	78	92	22.1219
EEEE}GGGGGGG}D	chr1:156721254-156721539(-)$1	285	127	141	21.0243
dddd]bb]a22acc	chr19:6424621-6424892(-)$1	271	210	224	22.7317
EEE?????GGGGGG	chr9:100745555-100745887(+)$1	332	131	145	24.3170
beeeee22cccEEE	chr20:57466518-57466792(+)$1	274	210	224	27.2439
DD{EEEEEbb[bbl	chr11:2160295-2160563(-)$1	268	79	93	23.2195
EEEEE{EEEEEddd	chr1:26798903-26799202(+)$1	299	138	152	23.3414
pppbb22a]dddd:	chr8:101733876-101734160(-)$1	284	59	73	24.4390
DD{EEEEEbb[bbl	chr11:2160379-2160642(-)$1	263	158	172	23.2195
eJJJJJJJJJJJJM	chr16:30077030-30077350(+)$1	320	161	175	24.0731
YGGGGGGG}FFFFF	chr1:156721115-156721397(-)$1	282	136	150	19.3170
}BB}BB}CCC:bb[	chr19:1241671-1242017(+)$1	346	161	175	22.4878
e::ggggggg!!ee	chr11:64001965-64002310(+)$1	345	229	243	28.4634
ccc:JJJJJJJJJJ	chr17:49243664-49243956(+)$1	292	82	96	23.0975
bb!!bb!!ddddmm	chr2:70314566-70314898(+)$1	332	93	107	27.2439
ccc[ccc+++++++	chr2:97541639-97542011(-)$1	372	130	144	20.5365
ddd]eeeee::DDD	chr6:34212609-34212864(+)$1	255	116	130	20.6585
dd:CCC:::::fff	chr1:32479388-32479656(+)$1	268	134	148	22.6097
CCKKDDDDKKCCC{	chr12:6875608-6875935(+)$1	327	79	93	21.2682
BLLLA{GGGGGGG{	chr16:58231517-58231871(-)$1	354	4	18	24.9268
i$$$$$ccc!!bb[	chr6:37138029-37138340(+)$1	311	114	128	25.5365
e"""bba[bbnnnn	chrX:152953477-152953693(+)$1	216	125	139	22.0000
!bbccc!!eeeee"	chr20:49547417-49547704(-)$1	287	129	143	25.6585
ff::ddddlllddd	chr13:45915174-45915417(-)$1	243	122	136	21.3902
b%%%%%%cccmmmm	chr6:26056513-26056763(-)$1	250	126	140	20.4146
a]ccc333eeeee]	chr20:57466603-57466870(+)$1	267	125	139	27.2439
eee::ccc"""ggg	chr12:120972416-120972682(+)$1	266	19	33	25.2926
CCC}BB::::::::	chrX:152953601-152953886(+)$1	285	271	285	28.5853
FFFBB}A}DDDD}A	chr11:61734777-61735183(-)$1	406	221	235	22.0000
####eeeeelllee	chr8:101733773-101734042(-)$1	269	29	43	22.1219
cc::DDDDLLLHHH	chr11:2398561-2398877(+)$1	316	159	173	28.5853
EEEE{CCC{CCCKK	chr6:37787506-37787819(+)$1	313	101	115	23.7073
JJJJJJJJJ{CCC:	chr20:62152052-62152310(+)$1	258	3	17	20.0487
::::JJJJJJJJJJ	chr15:75230176-75230486(-)$1	310	54	68	20.6585
ccc]eeeee::::d	chr11:810132-810381(+)$1	249	86	100	20.0487
EEEEA{DDDD{CCC	chrX:152953540-152953801(+)$1	261	62	76	22.0000
bb!!bbnnnnnbb2	chr12:53845876-53846170(+)$1	294	65	79	24.9268
dd%%%%%%bb[ccc	chr7:5570061-5570331(-)$1	270	161	175	22.8536

#DB
((......))))))	chr6:37137955-37138229(+)$1	1	188	202	25.5365
))).))))).....	chr6:34212678-34212944(+)$1	1	47	61	20.6585
))))..)).)))))	chr16:88870116-88870414(+)$1	1	277	291	28.5853
.)))))..))....	chr12:53845991-53846259(+)$1	1	78	92	22.1219
)))).))))))).)	chr1:156721254-156721539(-)$1	1	127	141	21.0243
)))).)).)..)))	chr19:6424621-6424892(-)$1	1	210	224	22.7317
))).....))))))	chr9:100745555-100745887(+)$1	1	131	145	24.3170
))))))..))))))	chr20:57466518-57466792(+)$1	1	210	224	27.2439
((.(((((((.((.	chr11:2160295-2160563(-)$1	1	79	93	23.2195
(((((.((((((((	chr1:26798903-26799202(+)$1	1	138	152	23.3414
...))..).)))).	chr8:101733876-101734160(-)$1	1	59	73	24.4390
((.(((((((.((.	chr11:2160379-2160642(-)$1	1	158	172	23.2195
)((((((((((((.	chr16:30077030-30077350(+)$1	1	161	175	24.0731
.))))))).)))))	chr1:156721115-156721397(-)$1	1	136	150	19.3170
.)).)).))).((.	chr19:1241671-1242017(+)$1	1	161	175	22.4878
)..(((((((..((	chr11:64001965-64002310(+)$1	1	229	243	28.4634
))).))))))))))	chr17:49243664-49243956(+)$1	1	82	96	23.0975
((..((..((((..	chr2:70314566-70314898(+)$1	1	93	107	27.2439
(((.(((.......	chr2:97541639-97542011(-)$1	1	130	144	20.5365
))).)))))..)))	chr6:34212609-34212864(+)$1	1	116	130	20.6585
)).))).....(((	chr1:32479388-32479656(+)$1	1	134	148	22.6097
((..((((..(((.	chr12:6875608-6875935(+)$1	1	79	93	21.2682
(...(.(((((((.	chr16:58231517-58231871(-)$1	1	4	18	24.9268
(.....(((..((.	chr6:37138029-37138340(+)$1	1	114	128	25.5365
(...(((.((....	chrX:152953477-152953693(+)$1	1	125	139	22.0000
.(((((..(((((.	chr20:49547417-49547704(-)$1	1	129	143	25.6585
))..((((...)))	chr13:45915174-45915417(-)$1	1	122	136	21.3902
(......(((....	chr6:26056513-26056763(-)$1	1	126	140	20.4146
).)))...))))).	chr20:57466603-57466870(+)$1	1	125	139	27.2439
)))..(((...(((	chr12:120972416-120972682(+)$1	1	19	33	25.2926
))).))........	chrX:152953601-152953886(+)$1	1	271	285	28.5853
))))).).)))).)	chr11:61734777-61735183(-)$1	1	221	235	22.0000
....(((((...))	chr8:101733773-101734042(-)$1	1	29	43	22.1219
))..((((...(((	chr11:2398561-2398877(+)$1	1	159	173	28.5853
((((.(((.(((..	chr6:37787506-37787819(+)$1	1	101	115	23.7073
(((((((((.(((.	chr20:62152052-62152310(+)$1	1	3	17	20.0487
....((((((((((	chr15:75230176-75230486(-)$1	1	54	68	20.6585
))).)))))....(	chr11:810132-810381(+)$1	1	86	100	20.0487
(((((.((((.(((	chrX:152953540-152953801(+)$1	1	62	76	22.0000
((..((.....)).	chr12:53845876-53846170(+)$1	1	65	79	24.9268
((......((.(((	chr7:5570061-5570331(-)$1	1	161	175	22.8536

#PSSM
C : 0.48	c : 0.19	g : 0.14	G : 0.12	u : 0.04	
C : 0.48	c : 0.34	U : 0.07	G : 0.04	g : 0.04	
C : 0.46	c : 0.36	G : 0.12	g : 0.02	A : 0.02	
C : 0.58	c : 0.34	g : 0.04	A : 0.02	
G : 0.43	g : 0.34	U : 0.14	c : 0.02	u : 0.02	A : 0.02	
C : 0.48	c : 0.34	G : 0.07	g : 0.04	A : 0.02	U : 0.02	
c : 0.48	C : 0.39	G : 0.09	A : 0.02	
C : 0.46	c : 0.46	A : 0.02	g : 0.02	G : 0.02	
G : 0.41	g : 0.39	a : 0.04	U : 0.04	A : 0.04	c : 0.02	u : 0.02	
C : 0.51	c : 0.46	g : 0.02	
c : 0.46	C : 0.39	U : 0.09	g : 0.02	A : 0.02	
G : 0.43	g : 0.43	c : 0.04	U : 0.04	C : 0.02	
C : 0.48	c : 0.48	U : 0.02	
C : 0.29	c : 0.26	u : 0.14	U : 0.14	g : 0.07	G : 0.04	A : 0.02	

#score	964.1951219512199
#seq	41
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_UTR_m3_run2.nuc.txt

#NT
UCCUG	chr16:28885228-28885488(+)$1	260	11	16	15.0000
uccug	chr16:84156125-84156420(-)$1	295	265	270	15.0000
UCCUG	chr17:2283789-2284115(+)$1	326	124	129	15.0000
UCCUG	chr9:135933279-135933603(+)$1	324	280	285	15.0000
UCCUG	chr22:50684003-50684244(-)$1	241	13	18	15.0000
UCCUG	chr9:117074557-117074782(+)$1	225	72	77	15.0000
UCCUG	chr22:32014799-32015045(-)$1	246	223	228	15.0000
UCCUG	chr16:69738293-69738565(+)$1	272	19	24	15.0000
UCCUG	chr20:57289552-57289813(+)$1	261	48	53	15.0000
UCCUG	chr17:41605248-41605465(-)$1	217	136	141	15.0000
UCCUG	chr3:48725536-48725792(-)$1	256	180	185	15.0000
UCCUG	chr9:117044636-117044848(+)$1	212	57	62	15.0000
UCCUG	chr14:74752973-74753235(-)$1	262	198	203	15.0000
UCCUG	chr17:39979097-39979348(+)$1	251	12	17	15.0000
UCCUG	chr16:30681698-30682002(+)$1	304	120	125	15.0000
UCCUG	chr19:1274559-1274859(+)$1	300	132	137	15.0000
UCCUG	chr16:88782125-88782362(-)$1	237	6	11	15.0000
UCCUG	chr9:117014773-117014976(+)$1	203	184	189	15.0000
UCCUG	chr3:184106648-184106876(+)$1	228	77	82	15.0000
UCCUG	chr12:57922937-57923197(+)$1	260	43	48	15.0000
UCCUG	chr14:24028868-24029106(-)$1	238	175	180	15.0000
uccug	chr17:80005933-80006205(-)$1	272	241	246	15.0000
UCCUG	chr22:38029350-38029622(+)$1	272	214	219	15.0000
UCCUG	chr20:57288897-57289163(+)$1	266	30	35	15.0000
uccug	chr17:76203456-76203697(+)$1	241	16	21	15.0000
UCCUG	chr11:46765302-46765621(-)$1	319	231	236	15.0000
uccug	chr20:34304566-34304817(-)$1	251	239	244	15.0000
UCCUG	chr20:43564023-43564238(+)$1	215	71	76	15.0000
UCCUG	chrX:153701284-153701617(+)$1	333	144	149	15.0000
UCCUG	chr10:103867373-103867647(-)$1	274	63	68	15.0000
UCCUG	chr14:21464842-21465094(+)$1	252	129	134	15.0000
UCCUG	chr9:138898484-138898762(-)$1	278	17	22	15.0000
UCCUG	chr1:150325372-150325628(+)$1	256	232	237	15.0000
UCCUG	chr10:120900543-120900838(-)$1	295	113	118	15.0000
UCCUG	chr12:112194354-112194688(+)$1	334	15	20	15.0000
UCCUG	chr3:49052619-49052856(+)$1	237	106	111	15.0000
UCCUG	chr9:117072728-117072934(+)$1	206	189	194	15.0000
UCCug	chr6:26123542-26123760(-)$1	218	186	191	15.0000
UCCUG	chr9:117074404-117074639(+)$1	235	225	230	15.0000
uccug	chr2:131131825-131132081(+)$1	256	158	163	15.0000
UCCUG	chr20:62326359-62326611(+)$1	252	183	188	15.0000
UCCUG	chr16:88718612-88718992(-)$1	380	22	27	15.0000
UCCUG	chrX:48317054-48317328(-)$1	274	79	84	15.0000
UCCUG	chr17:40268956-40269162(-)$1	206	152	157	15.0000
UCCUG	chr19:1274544-1274757(+)$1	213	147	152	15.0000
UCCUG	chr9:139933974-139934222(-)$1	248	176	181	15.0000
UCCUG	chr20:39803917-39804143(+)$1	226	148	153	15.0000
UCCUG	chr1:898627-898876(+)$1	249	211	216	15.0000
UCCUG	chr3:49753746-49754009(+)$1	263	127	132	15.0000
UCCUG	chr19:2754925-2755226(-)$1	301	93	98	15.0000
UCCUG	chr12:6648838-6649113(-)$1	275	142	147	15.0000

#otherMatches

#Struct PSSM
dddGG	chr1:1325564-1325851(-)$1	287	225	230	15.0000
KBBbb	chr16:28885228-28885488(+)$1	260	11	16	15.0000
@@@@@	chr16:84156125-84156420(-)$1	295	265	270	15.0000
c"""c	chr17:2283789-2284115(+)$1	326	124	129	15.0000
DDDD:	chr9:135933279-135933603(+)$1	324	280	285	15.0000
qqeee	chr22:50684003-50684244(-)$1	241	13	18	15.0000
:::::	chr9:117074557-117074782(+)$1	225	72	77	15.0000
vvvvv	chr22:32014799-32015045(-)$1	246	223	228	15.0000
flllf	chr16:69738293-69738565(+)$1	272	19	24	15.0000
ddd]d	chr20:57289552-57289813(+)$1	261	48	53	15.0000
hhhho	chr17:41605248-41605465(-)$1	217	136	141	15.0000
fffqq	chr3:48725536-48725792(-)$1	256	180	185	15.0000
dddmm	chr9:117044636-117044848(+)$1	212	57	62	15.0000
hhhhh	chr14:74752973-74753235(-)$1	262	198	203	15.0000
ccc[b	chr17:39979097-39979348(+)$1	251	12	17	15.0000
lffff	chr16:30681698-30682002(+)$1	304	120	125	15.0000
JJJJJ	chr19:1274559-1274859(+)$1	300	132	137	15.0000
GGGGG	chr16:88782125-88782362(-)$1	237	6	11	15.0000
eeee:	chr9:117014773-117014976(+)$1	203	184	189	15.0000
ooooe	chr3:184106648-184106876(+)$1	228	77	82	15.0000
GGGGG	chr12:57922937-57923197(+)$1	260	43	48	15.0000
hhhhh	chr14:24028868-24029106(-)$1	238	175	180	15.0000
mmmmb	chr17:80005933-80006205(-)$1	272	241	246	15.0000
fffff	chr22:38029350-38029622(+)$1	272	214	219	15.0000
MMEEE	chr20:57288897-57289163(+)$1	266	30	35	15.0000
::ddd	chr17:76203456-76203697(+)$1	241	16	21	15.0000
nnnnd	chr11:46765302-46765621(-)$1	319	231	236	15.0000
FFFFF	chr20:34304566-34304817(-)$1	251	239	244	15.0000
"dddd	chr20:43564023-43564238(+)$1	215	71	76	15.0000
DDD:f	chrX:153701284-153701617(+)$1	333	144	149	15.0000
ggggg	chr10:103867373-103867647(-)$1	274	63	68	15.0000
33ddd	chr14:21464842-21465094(+)$1	252	129	134	15.0000
IIIII	chr9:138898484-138898762(-)$1	278	17	22	15.0000
:::::	chr1:150325372-150325628(+)$1	256	232	237	15.0000
5eeee	chr10:120900543-120900838(-)$1	295	113	118	15.0000
GGGGG	chr12:112194354-112194688(+)$1	334	15	20	15.0000
]cccI	chr3:49052619-49052856(+)$1	237	106	111	15.0000
e!!bb	chr9:117072728-117072934(+)$1	206	189	194	15.0000
eeee2	chr6:26123542-26123760(-)$1	218	186	191	15.0000
cccee	chr9:117074404-117074639(+)$1	235	225	230	15.0000
ggggg	chr2:131131825-131132081(+)$1	256	158	163	15.0000
ggggg	chr20:62326359-62326611(+)$1	252	183	188	15.0000
nnnee	chr16:88718612-88718992(-)$1	380	22	27	15.0000
hhhhh	chrX:48317054-48317328(-)$1	274	79	84	15.0000
!ammm	chr17:40268956-40269162(-)$1	206	152	157	15.0000
dllld	chr19:1274544-1274757(+)$1	213	147	152	15.0000
ggggg	chr9:139933974-139934222(-)$1	248	176	181	15.0000
eeerr	chr20:39803917-39804143(+)$1	226	148	153	15.0000
]ccc8	chr1:898627-898876(+)$1	249	211	216	15.0000
b22dd	chr3:49753746-49754009(+)$1	263	127	132	15.0000
CCC{E	chr19:2754925-2755226(-)$1	301	93	98	15.0000
ffccc	chr12:6648838-6649113(-)$1	275	142	147	15.0000

#DB
)))))	chr1:1325564-1325851(-)$1	1	225	230	15.0000
.((((	chr16:28885228-28885488(+)$1	1	11	16	15.0000
.....	chr16:84156125-84156420(-)$1	1	265	270	15.0000
(...(	chr17:2283789-2284115(+)$1	1	124	129	15.0000
)))).	chr9:135933279-135933603(+)$1	1	280	285	15.0000
..)))	chr22:50684003-50684244(-)$1	1	13	18	15.0000
.....	chr9:117074557-117074782(+)$1	1	72	77	15.0000
.....	chr22:32014799-32015045(-)$1	1	223	228	15.0000
(...)	chr16:69738293-69738565(+)$1	1	19	24	15.0000
))).)	chr20:57289552-57289813(+)$1	1	48	53	15.0000
((((.	chr17:41605248-41605465(-)$1	1	136	141	15.0000
(((..	chr3:48725536-48725792(-)$1	1	180	185	15.0000
(((..	chr9:117044636-117044848(+)$1	1	57	62	15.0000
)))))	chr14:74752973-74753235(-)$1	1	198	203	15.0000
(((.(	chr17:39979097-39979348(+)$1	1	12	17	15.0000
.))))	chr16:30681698-30682002(+)$1	1	120	125	15.0000
(((((	chr19:1274559-1274859(+)$1	1	132	137	15.0000
(((((	chr16:88782125-88782362(-)$1	1	6	11	15.0000
)))).	chr9:117014773-117014976(+)$1	1	184	189	15.0000
....)	chr3:184106648-184106876(+)$1	1	77	82	15.0000
(((((	chr12:57922937-57923197(+)$1	1	43	48	15.0000
)))))	chr14:24028868-24029106(-)$1	1	175	180	15.0000
....)	chr17:80005933-80006205(-)$1	1	241	246	15.0000
)))))	chr22:38029350-38029622(+)$1	1	214	219	15.0000
..(((	chr20:57288897-57289163(+)$1	1	30	35	15.0000
..(((	chr17:76203456-76203697(+)$1	1	16	21	15.0000
....)	chr11:46765302-46765621(-)$1	1	231	236	15.0000
)))))	chr20:34304566-34304817(-)$1	1	239	244	15.0000
.((((	chr20:43564023-43564238(+)$1	1	71	76	15.0000
(((.(	chrX:153701284-153701617(+)$1	1	144	149	15.0000
(((((	chr10:103867373-103867647(-)$1	1	63	68	15.0000
..)))	chr14:21464842-21465094(+)$1	1	129	134	15.0000
(((((	chr9:138898484-138898762(-)$1	1	17	22	15.0000
.....	chr1:150325372-150325628(+)$1	1	232	237	15.0000
.))))	chr10:120900543-120900838(-)$1	1	113	118	15.0000
(((((	chr12:112194354-112194688(+)$1	1	15	20	15.0000
.))))	chr3:49052619-49052856(+)$1	1	106	111	15.0000
(..((	chr9:117072728-117072934(+)$1	1	189	194	15.0000
)))).	chr6:26123542-26123760(-)$1	1	186	191	15.0000
)))))	chr9:117074404-117074639(+)$1	1	225	230	15.0000
(((((	chr2:131131825-131132081(+)$1	1	158	163	15.0000
)))))	chr20:62326359-62326611(+)$1	1	183	188	15.0000
...))	chr16:88718612-88718992(-)$1	1	22	27	15.0000
(((((	chrX:48317054-48317328(-)$1	1	79	84	15.0000
.(...	chr17:40268956-40269162(-)$1	1	152	157	15.0000
(...)	chr19:1274544-1274757(+)$1	1	147	152	15.0000
)))))	chr9:139933974-139934222(-)$1	1	176	181	15.0000
(((..	chr20:39803917-39804143(+)$1	1	148	153	15.0000
.))).	chr1:898627-898876(+)$1	1	211	216	15.0000
)..))	chr3:49753746-49754009(+)$1	1	127	132	15.0000
(((.(	chr19:2754925-2755226(-)$1	1	93	98	15.0000
))(((	chr12:6648838-6649113(-)$1	1	142	147	15.0000

#PSSM
U : 0.90	u : 0.09	
C : 0.90	c : 0.09	
C : 0.90	c : 0.09	
U : 0.88	u : 0.11	
G : 0.88	g : 0.11	

#score	780.0000000000001
#seq	52
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_CDS_m1_run2.nuc.txt

#NT
GGGCCUUGGC	chr11:65367027-65367341(-)$1	314	235	245	16.0377
GGGCAGGGUC	chr22:39131924-39132235(-)$1	311	103	113	15.3773
GGGCUGGGGC	chr17:74077956-74078245(-)$1	289	171	181	19.8113
GGGCAGGCGC	chr11:60703285-60703668(+)$1	383	210	220	15.7547
GGGCCAGGCC	chr11:63765073-63765401(+)$1	328	228	238	15.0943
GGGCAGGUGC	chr19:1578232-1578447(-)$1	215	108	118	15.4716
gggccggggc	chr16:431618-431940(-)$1	322	274	284	22.0754
GGGCCGGGCC	chr8:144810644-144810919(-)$1	275	199	209	17.9245
GGGCCGCCGC	chr7:2686467-2686687(+)$1	220	35	45	14.8113
GGGCAGGCGC	chr11:60703483-60703744(+)$1	261	12	22	15.7547
GGGCCAUGGC	chr17:73314709-73314969(-)$1	260	95	105	15.9433
GUGCCUGGGC	chr17:8370273-8370599(+)$1	326	137	147	15.7547
AGGCCUGGGC	chr17:80401387-80401645(-)$1	258	119	129	15.0943
GGGCCGGGAC	chr17:79802921-79803161(-)$1	240	14	24	17.8301
GGGCCCAGGC	chr1:183521976-183522250(+)$1	274	219	229	15.5660
GUGCUGGGGC	chr22:24125972-24126300(+)$1	328	158	168	16.2264
gagccggcgc	chr12:133067155-133067507(+)$1	352	21	31	14.1509
GGGCCCGGGC	chr16:633302-633599(+)$1	297	260	270	19.0566
GUGCUGGGGC	chr9:140167246-140167541(+)$1	295	155	165	16.2264
GGGCCAGGGU	chr14:105235835-105236112(-)$1	277	14	24	14.9056
GGGCCUUGGC	chr8:134256499-134256705(-)$1	206	24	34	16.0377
GGGCAGGAGC	chr4:3769822-3770074(+)$1	252	29	39	15.5660
GGGCAGGGGC	chr19:1010695-1010957(-)$1	262	19	29	19.7169
GGGCCGGGGC	chr19:56132818-56133254(-)$1	436	0	10	22.0754
GGGCCAAGGC	chr6:42906251-42906516(+)$1	265	135	145	15.7547
gggccggggg	chr19:4400230-4400605(-)$1	375	10	20	17.8301
gggcgggggc	chr19:1592527-1592783(-)$1	256	14	24	19.2452
gggcccgggc	chr19:1020862-1021122(-)$1	260	157	167	19.0566
GGGCCACGGC	chr11:65365651-65365998(-)$1	347	45	55	15.9433
GUGCCGUGGC	chr22:37887238-37887478(-)$1	240	95	105	15.1886
UGGCUGGGGC	chr3:196730671-196730912(-)$1	241	77	87	15.7547
GGGCCGAGGC	chr2:97482306-97482564(+)$1	258	24	34	18.5849
GUGCUGGGGC	chr14:21484879-21485202(-)$1	323	39	49	16.2264
GGGCCUGGAC	chr16:29818027-29818264(+)$1	237	45	55	15.0943
GAGCCAGGGC	chr19:45323864-45324078(+)$1	214	107	117	15.2830
GGGCUGCGGC	chr16:89712245-89712500(-)$1	255	122	132	16.5094
CUGCCGGGGC	chr2:220087000-220087273(-)$1	273	139	149	14.4339
cggccggagc	chr4:2263596-2263872(-)$1	276	103	113	13.8679
GGGCAGGGCC	chr17:74077682-74077963(-)$1	281	155	165	15.5660
GGGCCCUGGC	chr20:20373710-20373999(-)$1	289	102	112	15.7547
GGGCCUGGGC	chr7:1586396-1586696(-)$1	300	111	121	19.3396
UGGCAGGGGC	chr22:36661954-36662166(+)$1	212	160	170	15.6603
UGGCCGCGGC	chr19:1010533-1010825(-)$1	292	184	194	14.7169
GGGCCGGGGC	chr19:47724735-47725071(-)$1	336	149	159	22.0754
GGGCGGGGGC	chr2:96873931-96874356(-)$1	425	228	238	19.2452
GCGCCGGGGC	chr17:14204869-14205139(+)$1	270	137	147	18.0188
GGGCUGCGGC	chr19:7534908-7535220(+)$1	312	50	60	16.5094
GGGCUGGGGC	chr19:54677692-54677970(-)$1	278	137	147	19.8113
CGGCCGGGGG	chr8:145754269-145754560(-)$1	291	23	33	13.7735
GGGCUGGGGC	chr19:55998204-55998443(+)$1	239	64	74	19.8113
GGGCCUGGGG	chr1:150238384-150238663(-)$1	279	155	165	15.0943
GGGCGGGGGC	chr19:3543285-3543544(-)$1	259	0	10	19.2452

#otherMatches

#Struct PSSM
d]cccJJJJJ	chr17:79679256-79679640(+)$1	384	152	162	17.7358
iiiiiiiccc	chr11:65367027-65367341(-)$1	314	235	245	16.0377
dddd]ccc]e	chr22:39131924-39132235(-)$1	311	103	113	15.3773
ee[ggggggg	chr17:74077956-74078245(-)$1	289	171	181	19.8113
GGGGGG{A{C	chr11:60703285-60703668(+)$1	383	210	220	15.7547
ggggg"""bb	chr11:63765073-63765401(+)$1	328	228	238	15.0943
bbddddllld	chr19:1578232-1578447(-)$1	215	108	118	15.4716
c]ccc]a]cc	chr16:431618-431940(-)$1	322	274	284	22.0754
gggggdddd5	chr8:144810644-144810919(-)$1	275	199	209	17.9245
iiii::CCCE	chr7:2686467-2686687(+)$1	220	35	45	14.8113
cffffff[bb	chr11:60703483-60703744(+)$1	261	12	22	15.7547
FFccc[a[bb	chr17:73314709-73314969(-)$1	260	95	105	15.9433
dddffffff:	chr17:8370273-8370599(+)$1	326	137	147	15.7547
:ggggggg[=	chr17:80401387-80401645(-)$1	258	119	129	15.0943
lddddBB{DD	chr17:79802921-79803161(-)$1	240	14	24	17.8301
ddddmmmmdd	chr1:183521976-183522250(+)$1	274	219	229	15.5660
eeee:fffff	chr22:24125972-24126300(+)$1	328	158	168	16.2264
CCCCCEEEEE	chr12:133067155-133067507(+)$1	352	21	31	14.1509
eee::IIIII	chr16:633302-633599(+)$1	297	260	270	19.0566
EE:::iiiii	chr9:140167246-140167541(+)$1	295	155	165	16.2264
EEEEE{DDDD	chr14:105235835-105236112(-)$1	277	14	24	14.9056
eee####ddd	chr8:134256499-134256705(-)$1	206	24	34	16.0377
KA{A:=====	chr4:3769822-3770074(+)$1	252	29	39	15.5660
dda!!fffff	chr19:1010695-1010957(-)$1	262	19	29	19.7169
:a[bb[a[cc	chr19:56132818-56133254(-)$1	436	0	10	22.0754
FFFFZZZBBY	chr6:42906251-42906516(+)$1	265	135	145	15.7547
[hhhhhhhh#	chr19:4400230-4400605(-)$1	375	10	20	17.8301
ddddmmmmdd	chr19:1592527-1592783(-)$1	256	14	24	19.2452
]abbddddcc	chr19:1020862-1021122(-)$1	260	157	167	19.0566
Ddddd!!eee	chr11:65365651-65365998(-)$1	347	45	55	15.9433
llhhhhhhhh	chr22:37887238-37887478(-)$1	240	95	105	15.1886
ccbb####ee	chr3:196730671-196730912(-)$1	241	77	87	15.7547
FFFFF:EEEE	chr2:97482306-97482564(+)$1	258	24	34	18.5849
GGGGG{Accc	chr14:21484879-21485202(-)$1	323	39	49	16.2264
ffff"""ccc	chr16:29818027-29818264(+)$1	237	45	55	15.0943
fff333dddd	chr19:45323864-45324078(+)$1	214	107	117	15.2830
gggg]eeeee	chr16:89712245-89712500(-)$1	255	122	132	16.5094
:::::hhhhh	chr2:220087000-220087273(-)$1	273	139	149	14.4339
dd]ccc22cc	chr4:2263596-2263872(-)$1	276	103	113	13.8679
D:::::::cc	chr17:74077682-74077963(-)$1	281	155	165	15.5660
gggg[bbccc	chr20:20373710-20373999(-)$1	289	102	112	15.7547
eIIIIIIIII	chr7:1586396-1586696(-)$1	300	111	121	19.3396
ffffmmmmff	chr22:36661954-36662166(+)$1	212	160	170	15.6603
22eeeeeCCC	chr19:1010533-1010825(-)$1	292	184	194	14.7169
dddd[eeeee	chr19:47724735-47725071(-)$1	336	149	159	22.0754
bb]ddddIII	chr2:96873931-96874356(-)$1	425	228	238	19.2452
D}GGGGGGGA	chr17:14204869-14205139(+)$1	270	137	147	18.0188
GGGGGGDDDD	chr19:7534908-7535220(+)$1	312	50	60	16.5094
#=========	chr19:54677692-54677970(-)$1	278	137	147	19.8113
a]bb]iiiii	chr8:145754269-145754560(-)$1	291	23	33	13.7735
bb[allla]b	chr19:55998204-55998443(+)$1	239	64	74	19.8113
ppppppeeee	chr1:150238384-150238663(-)$1	279	155	165	15.0943
:::BB{A{EE	chr19:3543285-3543544(-)$1	259	0	10	19.2452

#DB
).)))(((((	chr17:79679256-79679640(+)$1	1	152	162	17.7358
((((((((((	chr11:65367027-65367341(-)$1	1	235	245	16.0377
)))).))).)	chr22:39131924-39132235(-)$1	1	103	113	15.3773
((.(((((((	chr17:74077956-74078245(-)$1	1	171	181	19.8113
((((((.(.(	chr11:60703285-60703668(+)$1	1	210	220	15.7547
(((((...((	chr11:63765073-63765401(+)$1	1	228	238	15.0943
))((((...)	chr19:1578232-1578447(-)$1	1	108	118	15.4716
).))).).))	chr16:431618-431940(-)$1	1	274	284	22.0754
))))))))).	chr8:144810644-144810919(-)$1	1	199	209	17.9245
))))..((((	chr7:2686467-2686687(+)$1	1	35	45	14.8113
(((((((.((	chr11:60703483-60703744(+)$1	1	12	22	15.7547
))(((.(.((	chr17:73314709-73314969(-)$1	1	95	105	15.9433
))))))))).	chr17:8370273-8370599(+)$1	1	137	147	15.7547
.(((((((.(	chr17:80401387-80401645(-)$1	1	119	129	15.0943
.))))((.((	chr17:79802921-79803161(-)$1	1	14	24	17.8301
((((....))	chr1:183521976-183522250(+)$1	1	219	229	15.5660
)))).(((((	chr22:24125972-24126300(+)$1	1	158	168	16.2264
((((((((((	chr12:133067155-133067507(+)$1	1	21	31	14.1509
)))..)))))	chr16:633302-633599(+)$1	1	260	270	19.0566
))...(((((	chr9:140167246-140167541(+)$1	1	155	165	16.2264
(((((.((((	chr14:105235835-105236112(-)$1	1	14	24	14.9056
(((....(((	chr8:134256499-134256705(-)$1	1	24	34	16.0377
.(.(.(((((	chr4:3769822-3770074(+)$1	1	29	39	15.5660
(((..(((((	chr19:1010695-1010957(-)$1	1	19	29	19.7169
.(.((.(.((	chr19:56132818-56133254(-)$1	1	0	10	22.0754
))))...)).	chr6:42906251-42906516(+)$1	1	135	145	15.7547
.((((((((.	chr19:4400230-4400605(-)$1	1	10	20	17.8301
((((....))	chr19:1592527-1592783(-)$1	1	14	24	19.2452
.)))))))))	chr19:1020862-1021122(-)$1	1	157	167	19.0566
(((((..(((	chr11:65365651-65365998(-)$1	1	45	55	15.9433
..))))))))	chr22:37887238-37887478(-)$1	1	95	105	15.1886
((((....((	chr3:196730671-196730912(-)$1	1	77	87	15.7547
(((((.((((	chr2:97482306-97482564(+)$1	1	24	34	18.5849
(((((.((((	chr14:21484879-21485202(-)$1	1	39	49	16.2264
((((...(((	chr16:29818027-29818264(+)$1	1	45	55	15.0943
)))...))))	chr19:45323864-45324078(+)$1	1	107	117	15.2830
)))).)))))	chr16:89712245-89712500(-)$1	1	122	132	16.5094
.....(((((	chr2:220087000-220087273(-)$1	1	139	149	14.4339
)).)))..))	chr4:2263596-2263872(-)$1	1	103	113	13.8679
(.......((	chr17:74077682-74077963(-)$1	1	155	165	15.5660
((((.(((((	chr20:20373710-20373999(-)$1	1	102	112	15.7547
))))))))))	chr7:1586396-1586696(-)$1	1	111	121	19.3396
((((....))	chr22:36661954-36662166(+)$1	1	160	170	15.6603
..))))))))	chr19:1010533-1010825(-)$1	1	184	194	14.7169
((((.(((((	chr19:47724735-47725071(-)$1	1	149	159	22.0754
)).)))))))	chr2:96873931-96874356(-)$1	1	228	238	19.2452
).))))))))	chr17:14204869-14205139(+)$1	1	137	147	18.0188
((((((((((	chr19:7534908-7535220(+)$1	1	50	60	16.5094
.(((((((((	chr19:54677692-54677970(-)$1	1	137	147	19.8113
).)).)))))	chr8:145754269-145754560(-)$1	1	23	33	13.7735
((.(...).)	chr19:55998204-55998443(+)$1	1	64	74	19.8113
......))))	chr1:150238384-150238663(-)$1	1	155	165	15.0943
...((.(.((	chr19:3543285-3543544(-)$1	1	0	10	19.2452

#PSSM
G : 0.77	g : 0.09	U : 0.05	C : 0.03	A : 0.01	c : 0.01	
G : 0.73	U : 0.11	g : 0.09	a : 0.01	A : 0.01	C : 0.01	
G : 0.88	g : 0.11	
C : 0.88	c : 0.11	
C : 0.52	U : 0.16	A : 0.15	c : 0.09	G : 0.03	g : 0.01	
G : 0.58	U : 0.13	A : 0.11	g : 0.09	C : 0.05	c : 0.01	
G : 0.64	g : 0.11	U : 0.09	C : 0.09	A : 0.05	
G : 0.79	g : 0.07	C : 0.05	U : 0.01	c : 0.01	A : 0.01	a : 0.01	
G : 0.77	g : 0.11	C : 0.05	A : 0.03	U : 0.01	
C : 0.81	c : 0.09	U : 0.03	G : 0.03	g : 0.01	

#score	893.3962264150944
#seq	53
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_CDS_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
:::CCC{CCC{DDDD{CCC:::ccc[dddd[ddddllldddd333dddd]cccCCCKKCCC{A{DDDD:DDDD{BB{A{GGGGGGG:ccc[cccnnnnnccc]ccc:ddddnnnnndddd:::::GGGGGGG}A}BBDDDD::ffffffnnnnnffffffDDDD}A}CCCZZZCCCffffff[bb[dddd[ddddqqqqqqqqdddd]dddd]bb]ffffff:ddddmmmmdddd:::CCC}DDDDCCC}CCC	chr21:46281543-46281796(-)$1	253	0	253	759.0000

#DB
...(((.(((.((((.(((...(((.((((.((((...))))...)))).)))(((..(((.(.((((.((((.((.(.(((((((.(((.(((.....))).))).((((.....)))).....))))))).).))))))..((((((.....)))))))))).).)))...)))((((((.((.((((.((((........)))).)))).)).)))))).((((....))))...))).))))))).)))	chr21:46281543-46281796(-)$1	1	0	253	759.0000

#PSSM
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	

#score	759.0
#seq	1
#width	253
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_transcript_m2_run1.nuc.txt

#NT
GUGGGAGCUGGGG	chr16:88562246-88562488(+)$1	242	89	102	15.1320
GUGGGGUGUGGAG	chr16:81506201-81506454(+)$1	253	208	221	14.8490
GUUGGGGUCAGGG	chr16:88956770-88957003(-)$1	233	80	93	14.5660
CCUGUGGGUGGGG	chr6:3259155-3259417(+)$1	262	214	227	16.4528
GAUGUGGGCGGGG	chr19:1415365-1415592(+)$1	227	185	198	17.9622
GAUGGAGGCGGGG	chr2:61764444-61764687(-)$1	243	178	191	17.8679
gggggcggugggg	chr8:102217356-102217609(-)$1	253	15	28	18.0566
UUGGGGGGUGGGG	chr20:31167158-31167387(-)$1	229	86	99	18.5283
GCUGGGAGAGAGG	chr5:138629435-138629694(+)$1	259	14	27	16.9245
gcgggggcagggg	chr2:97535532-97535817(-)$1	285	131	144	18.3396
GGUGGUAGAGGGG	chr16:89654628-89654962(+)$1	334	153	166	15.6981
GUGGGGAGUUGGG	chr19:2445338-2445612(-)$1	274	21	34	15.2264
GCUGGGAGUGGGG	chr7:150799045-150799280(+)$1	235	86	99	21.6415
GGGGUGGGUGGGG	chr19:575542-575779(+)$1	237	58	71	17.9622
ggguggggugggg	chr15:64752843-64753080(+)$1	237	73	86	17.8679
GCCGGGACUGGGG	chr3:183353640-183353896(+)$1	256	234	247	15.5094
CUUGGGGGCGGCG	chr22:17090942-17091188(+)$1	246	55	68	14.7547
gaugggagggugg	chr16:88587443-88587694(+)$1	251	18	31	14.2830
GCUGAGAGAGGGG	chr3:128216204-128216504(+)$1	300	66	79	16.4528
GUGGGGGGAGAGG	chr12:123868854-123869119(+)$1	265	30	43	18.0566
guaggcggagggg	chr17:80544316-80544577(+)$1	261	102	115	17.0188
GAGGGGGGUGGGG	chr7:1482572-1482814(-)$1	242	84	97	21.7358
GCUGGCGGUGGGG	chr16:85648114-85648395(+)$1	281	125	138	20.6037
GCUUGGGGUGGGG	chr1:2161084-2161348(+)$1	264	126	139	20.4150
GUAGGCggagggg	chr17:80544006-80544223(+)$1	217	70	83	17.0188
CCUGCGGgugggg	chr19:4035189-4035435(+)$1	246	175	188	16.4528
GCUGGGGAAGGGG	chr2:97534068-97534333(-)$1	265	125	138	19.7547
GGAGCGGGUGGGG	chr22:49927110-49927381(-)$1	271	111	124	17.1132
GCUCGGGGUGGGC	chr2:97534837-97535096(-)$1	259	7	20	15.8867
GGCCGGGGAGGGG	chr16:591175-591433(+)$1	258	191	204	16.0754
GUUGGGGGCGGGG	chr19:2270063-2270309(+)$1	246	158	171	23.0566
GGGCGGGGCGGGG	chr6:7109558-7109806(+)$1	248	191	204	16.3584
GCUGGGGAAGGGG	chr13:114562623-114562980(-)$1	357	19	32	19.7547
UUUGGGAGCGGGG	chr19:1410344-1410582(+)$1	238	33	46	15.8867
GCUGGGCCUGGGG	chr1:971890-972148(+)$1	258	72	85	17.4905
GUCGGGAGUGGCG	chr11:611793-612058(+)$1	265	17	30	14.7547
guugggguugggg	chr3:197899399-197899650(+)$1	251	188	201	20.6981
GUGGGGGGCGCGG	chr7:5569887-5570167(-)$1	280	141	154	17.3962
gaugggggaggga	chr8:9629459-9629719(+)$1	260	59	72	18.2452
ggugggggagggg	chr21:44394935-44395186(+)$1	251	25	38	22.8679
GGUGGGCGUGGGG	chr12:133101595-133101848(+)$1	253	48	61	20.2264
GCUGGGGGCGGCG	chr2:172379406-172379627(+)$1	221	95	108	18.8113
GUUUGGGGUGGGG	chr19:18668664-18668973(+)$1	309	88	101	20.4150
GAUGGGGCAGAGG	chr22:50050721-50050960(-)$1	239	86	99	15.3207
GCUGGGGGACAGG	chr11:584378-584662(+)$1	284	62	75	15.2264
CUCGGGGGUGUGG	chr19:2271001-2271272(+)$1	271	230	243	13.9056
gguggguguggag	chr2:242693254-242693530(+)$1	276	253	266	15.8867
GUGGGGGGAGGGG	chrX:152954465-152954742(+)$1	277	29	42	21.8301
GCUGCGGGAGCGG	chr19:2270264-2270523(+)$1	259	55	68	15.6981
GAUGGGGCUGGGA	chr11:63777182-63777459(-)$1	277	99	112	15.6981
GCUGGGGGUGCGA	chr11:65190316-65190528(+)$1	212	72	85	16.3584
GCAGGGGGCGGGG	chr19:18547928-18548199(-)$1	271	13	26	20.4150

#otherMatches

#Struct PSSM
CFFFFFF{A{FFF	chr16:1422343-1422595(-)$1	252	80	93	24.5660
JJJJJJJJJJ{BB	chr16:88562246-88562488(+)$1	242	89	102	15.1320
bb[affffff###	chr16:81506201-81506454(+)$1	253	208	221	14.8490
dd"""ggggggg[	chr16:88956770-88957003(-)$1	233	80	93	14.5660
iiiggggggg[bb	chr6:3259155-3259417(+)$1	262	214	227	16.4528
mmccc]ggggggg	chr19:1415365-1415592(+)$1	227	185	198	17.9622
sssssseeeeeii	chr2:61764444-61764687(-)$1	243	178	191	17.8679
{EEEEEFFFFFFK	chr8:102217356-102217609(-)$1	253	15	28	18.0566
ff[bb"""bb[a[	chr20:31167158-31167387(-)$1	229	86	99	18.5283
DDDggggggg[bb	chr5:138629435-138629694(+)$1	259	14	27	16.9245
bbmmmmbb:EEEE	chr2:97535532-97535817(-)$1	285	131	144	18.3396
ddd::::::IIII	chr16:89654628-89654962(+)$1	334	153	166	15.6981
{DDDDKKCCCeee	chr19:2445338-2445612(-)$1	274	21	34	15.2264
ffffccc[bb[a[	chr7:150799045-150799280(+)$1	235	86	99	21.6415
gggggdddd[ccc	chr19:575542-575779(+)$1	237	58	71	17.9622
!!bb!!a[bb[dd	chr15:64752843-64753080(+)$1	237	73	86	17.8679
======]a]eeee	chr3:183353640-183353896(+)$1	256	234	247	15.5094
eellleeeee]a]	chr22:17090942-17091188(+)$1	246	55	68	14.7547
cc[dddd[ccc[b	chr16:88587443-88587694(+)$1	251	18	31	14.2830
qqqqqqa22hhhh	chr3:128216204-128216504(+)$1	300	66	79	16.4528
e[ffffff"""bb	chr12:123868854-123869119(+)$1	265	30	43	18.0566
bbdddd[bbdddd	chr17:80544316-80544577(+)$1	261	102	115	17.0188
ccc[iiiiiiiii	chr7:1482572-1482814(-)$1	242	84	97	21.7358
FFFF{HHHHHHHH	chr16:85648114-85648395(+)$1	281	125	138	20.6037
ddd:eeeeemmmm	chr1:2161084-2161348(+)$1	264	126	139	20.4150
pppccc:::::::	chr17:80544006-80544223(+)$1	217	70	83	17.0188
bbmmmmbb]gggg	chr19:4035189-4035435(+)$1	246	175	188	16.4528
D{EEEEE{CCCBB	chr2:97534068-97534333(-)$1	265	125	138	19.7547
ddd[dddd[eeee	chr22:49927110-49927381(-)$1	271	111	124	17.1132
::::eeeeeccc[	chr2:97534837-97535096(-)$1	259	7	20	15.8867
ggga[ccc[a"""	chr16:591175-591433(+)$1	258	191	204	16.0754
[ccc"""eeeee!	chr19:2270063-2270309(+)$1	246	158	171	23.0566
gpppppppggggg	chr6:7109558-7109806(+)$1	248	191	204	16.3584
{EEEEE::fffff	chr13:114562623-114562980(-)$1	357	19	32	19.7547
cclllccc]eeee	chr19:1410344-1410582(+)$1	238	33	46	15.8867
ffffffhhhhhhh	chr1:971890-972148(+)$1	258	72	85	17.4905
[eeeee[eeeee!	chr11:611793-612058(+)$1	265	17	30	14.7547
22dddd]eeeeec	chr3:197899399-197899650(+)$1	251	188	201	20.6981
dddd]dddd]bb]	chr7:5569887-5570167(-)$1	280	141	154	17.3962
:::::::::::::	chr8:9629459-9629719(+)$1	260	59	72	18.2452
{BBRRRRRRRRRB	chr21:44394935-44395186(+)$1	251	25	38	22.8679
EEEEEKKGGGGGG	chr12:133101595-133101848(+)$1	253	48	61	20.2264
cccdddd[ddddq	chr2:172379406-172379627(+)$1	221	95	108	18.8113
%%%%eeeee[a[c	chr19:18668664-18668973(+)$1	309	88	101	20.4150
fffff[cccmmmm	chr22:50050721-50050960(-)$1	239	86	99	15.3207
hhhhhhhh:ccc[	chr11:584378-584662(+)$1	284	62	75	15.2264
ggggggeeeee]a	chr19:2271001-2271272(+)$1	271	230	243	13.9056
iiiiiiiDDDD}G	chr2:242693254-242693530(+)$1	276	253	266	15.8867
b]bbJJJJJJJJJ	chrX:152954465-152954742(+)$1	277	29	42	21.8301
[ddddmmmmdddd	chr19:2270264-2270523(+)$1	259	55	68	15.6981
$$eeeeeffffff	chr11:63777182-63777459(-)$1	277	99	112	15.6981
EEEEMMMMCCC::	chr11:65190316-65190528(+)$1	212	72	85	16.3584
NNNEEEEE{BBFF	chr19:18547928-18548199(-)$1	271	13	26	20.4150

#DB
)((((((.(.(((	chr16:1422343-1422595(-)$1	1	80	93	24.5660
((((((((((.((	chr16:88562246-88562488(+)$1	1	89	102	15.1320
((.(((((((...	chr16:81506201-81506454(+)$1	1	208	221	14.8490
((...(((((((.	chr16:88956770-88957003(-)$1	1	80	93	14.5660
)))(((((((.((	chr6:3259155-3259417(+)$1	1	214	227	16.4528
..))).)))))))	chr19:1415365-1415592(+)$1	1	185	198	17.9622
......)))))))	chr2:61764444-61764687(-)$1	1	178	191	17.8679
.(((((((((((.	chr8:102217356-102217609(-)$1	1	15	28	18.0566
((.((...((.(.	chr20:31167158-31167387(-)$1	1	86	99	18.5283
((((((((((.((	chr5:138629435-138629694(+)$1	1	14	27	16.9245
((....)).((((	chr2:97535532-97535817(-)$1	1	131	144	18.3396
)))......((((	chr16:89654628-89654962(+)$1	1	153	166	15.6981
.((((..((((((	chr19:2445338-2445612(-)$1	1	21	34	15.2264
))))(((.((.(.	chr7:150799045-150799280(+)$1	1	86	99	21.6415
(((((((((.(((	chr19:575542-575779(+)$1	1	58	71	17.9622
..((..(.((.((	chr15:64752843-64753080(+)$1	1	73	86	17.8679
)))))).).))))	chr3:183353640-183353896(+)$1	1	234	247	15.5094
((...))))).).	chr22:17090942-17091188(+)$1	1	55	68	14.7547
((.((((.(((.(	chr16:88587443-88587694(+)$1	1	18	31	14.2830
......)..))))	chr3:128216204-128216504(+)$1	1	66	79	16.4528
(.((((((...((	chr12:123868854-123869119(+)$1	1	30	43	18.0566
((((((.((((((	chr17:80544316-80544577(+)$1	1	102	115	17.0188
(((.(((((((((	chr7:1482572-1482814(-)$1	1	84	97	21.7358
((((.((((((((	chr16:85648114-85648395(+)$1	1	125	138	20.6037
))).(((((....	chr1:2161084-2161348(+)$1	1	126	139	20.4150
...))).......	chr17:80544006-80544223(+)$1	1	70	83	17.0188
((....)).))))	chr19:4035189-4035435(+)$1	1	175	188	16.4528
(.(((((.(((((	chr2:97534068-97534333(-)$1	1	125	138	19.7547
(((.((((.((((	chr22:49927110-49927381(-)$1	1	111	124	17.1132
....((((((((.	chr2:97534837-97535096(-)$1	1	7	20	15.8867
((((.(((.(...	chr16:591175-591433(+)$1	1	191	204	16.0754
.(((...(((((.	chr19:2270063-2270309(+)$1	1	158	171	23.0566
(.......)))))	chr6:7109558-7109806(+)$1	1	191	204	16.3584
.(((((..(((((	chr13:114562623-114562980(-)$1	1	19	32	19.7547
((...))).))))	chr19:1410344-1410582(+)$1	1	33	46	15.8867
)))))))))))))	chr1:971890-972148(+)$1	1	72	85	17.4905
.(((((.(((((.	chr11:611793-612058(+)$1	1	17	30	14.7547
..)))).))))))	chr3:197899399-197899650(+)$1	1	188	201	20.6981
)))).)))).)).	chr7:5569887-5570167(-)$1	1	141	154	17.3962
.............	chr8:9629459-9629719(+)$1	1	59	72	18.2452
.((.........(	chr21:44394935-44395186(+)$1	1	25	38	22.8679
(((((..((((((	chr12:133101595-133101848(+)$1	1	48	61	20.2264
)))((((.((((.	chr2:172379406-172379627(+)$1	1	95	108	18.8113
....(((((.(.(	chr19:18668664-18668973(+)$1	1	88	101	20.4150
(((((.(((....	chr22:50050721-50050960(-)$1	1	86	99	15.3207
)))))))).(((.	chr11:584378-584662(+)$1	1	62	75	15.2264
))))))))))).)	chr19:2271001-2271272(+)$1	1	230	243	13.9056
))))))))))).)	chr2:242693254-242693530(+)$1	1	253	266	15.8867
).))(((((((((	chrX:152954465-152954742(+)$1	1	29	42	21.8301
.((((....))))	chr19:2270264-2270523(+)$1	1	55	68	15.6981
..(((((((((((	chr11:63777182-63777459(-)$1	1	99	112	15.6981
((((....(((..	chr11:65190316-65190528(+)$1	1	72	85	16.3584
...(((((.((((	chr19:18547928-18548199(-)$1	1	13	26	20.4150

#PSSM
G : 0.71	g : 0.16	C : 0.07	U : 0.03	
C : 0.32	U : 0.30	G : 0.11	A : 0.09	g : 0.07	a : 0.03	u : 0.03	c : 0.01	
U : 0.50	G : 0.18	u : 0.09	C : 0.07	g : 0.05	A : 0.05	a : 0.01	
G : 0.73	g : 0.15	C : 0.05	U : 0.03	u : 0.01	
G : 0.69	g : 0.16	U : 0.05	C : 0.05	A : 0.01	
G : 0.73	g : 0.13	A : 0.03	c : 0.03	C : 0.03	U : 0.01	
G : 0.60	g : 0.15	A : 0.15	C : 0.03	U : 0.01	a : 0.01	u : 0.01	
G : 0.64	g : 0.16	C : 0.09	A : 0.03	U : 0.01	c : 0.01	u : 0.01	
U : 0.39	A : 0.20	C : 0.18	u : 0.09	a : 0.09	g : 0.01	
G : 0.73	g : 0.20	A : 0.01	U : 0.01	C : 0.01	
G : 0.64	g : 0.18	A : 0.07	C : 0.05	u : 0.01	U : 0.01	
G : 0.71	g : 0.18	C : 0.05	A : 0.01	a : 0.01	
G : 0.73	g : 0.18	A : 0.03	C : 0.01	a : 0.01	

#score	939.0754716981129
#seq	53
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_transcript_m3_run1.nuc.txt

#NT
GUUUAUUU	chr16:58575373-58575650(-)$1	277	73	81	15.7543
UUUUAUGU	chr11:34475237-34475504(+)$1	267	5	13	15.4035
UUUUAUUG	chr21:40610341-40610636(-)$1	295	240	248	15.5789
UUUUAAUU	chr20:17956191-17956482(+)$1	291	36	44	15.6666
UUUUGUUU	chr12:98921726-98922045(+)$1	319	130	138	16.9824
UUUUAUUU	chr13:39588462-39588736(-)$1	274	14	22	20.1403
UUUUAUUC	chr15:65398561-65398839(-)$1	278	86	94	15.5789
uuuuauuu	chr7:139049501-139049776(+)$1	275	23	31	20.1403
UUUUCUUU	chr3:122432003-122432273(+)$1	270	255	263	16.5438
AUUUAUUU	chr4:175238379-175238633(+)$1	254	9	17	15.6666
UUUUCUUU	chr3:32571663-32571930(-)$1	267	39	47	16.5438
UGUUAUUU	chr3:25656940-25657185(-)$1	245	93	101	15.9298
UUUUAUUU	chr5:38970607-38970858(-)$1	251	77	85	20.1403
uuuuauua	chr7:97491220-97491540(-)$1	320	127	135	15.6666
UUUUAUUU	chr11:62444532-62444783(-)$1	251	27	35	20.1403
UUUUAUUU	chr12:72004418-72004639(-)$1	221	180	188	20.1403
UUAUAUUU	chr22:36164259-36164500(-)$1	241	227	235	16.3684
UUGUAUUU	chr7:5262119-5262367(+)$1	248	220	228	16.0175
UGUUAUUU	chr3:52722007-52722291(+)$1	284	92	100	15.9298
UUUUAAUU	chr5:460976-461221(+)$1	245	199	207	15.6666
UUUUAUUA	chr2:97285103-97285406(-)$1	303	97	105	15.6666
UUAUAUUU	chr20:50052013-50052273(-)$1	260	229	237	16.3684
UUUUGUUU	chr20:37198194-37198484(+)$1	290	64	72	16.9824
uuuuuuuu	chr11:3741907-3742166(-)$1	259	88	96	16.4561
UUUGAUUU	chr3:133367920-133368187(-)$1	267	176	184	15.7543
UUUUAUUU	chr5:86688551-86688822(-)$1	271	191	199	20.1403
GUUUAUUU	chr6:57005991-57006270(+)$1	279	64	72	15.7543
CUUUAUUU	chr5:138650249-138650459(+)$1	210	75	83	15.7543
UUUCAUUU	chr11:119103056-119103294(+)$1	238	86	94	15.5789
UUUUGUUU	chr6:137527894-137528161(-)$1	267	99	107	16.9824
uuuuguuu	chr12:123791703-123792024(-)$1	321	270	278	16.9824
UUUUAUUU	chr2:198283156-198283437(-)$1	281	80	88	20.1403
UUGUAUUU	chr7:77571890-77572147(+)$1	257	190	198	16.0175
UUUUAUUU	chr5:158621671-158621945(-)$1	274	90	98	20.1403
uuuuguuu	chr18:1361075-1361334(-)$1	259	196	204	16.9824
UUUUGUUU	chr11:95528572-95528820(+)$1	248	20	28	16.9824
UGUUAUUU	chr3:43740650-43740915(+)$1	265	92	100	15.9298
uuugauuu	chr4:66916-67177(+)$1	261	101	109	15.7543
UUUUAUUU	chr10:28906476-28906742(+)$1	266	50	58	20.1403
UCUUAUUU	chrX:70764856-70765110(+)$1	254	86	94	15.6666
uuuuauuu	chr2:168776631-168776914(-)$1	283	37	45	20.1403
UUUUAAUU	chr4:120440530-120440801(+)$1	271	97	105	15.6666
uuuuguuu	chr10:7845397-7845661(+)$1	264	54	62	16.9824
UUAUAUUU	chr1:207956527-207956782(+)$1	255	50	58	16.3684
UGUUAUUU	chr11:87006718-87006965(+)$1	247	70	78	15.9298
UUAUAUUU	chr10:70513496-70513750(+)$1	254	32	40	16.3684
UUAUAUUU	chr1:10186751-10187016(+)$1	265	68	76	16.3684
UUAUAUUU	chr1:150815349-150815594(-)$1	245	125	133	16.3684
UUUUAUUU	chr1:35870858-35871129(+)$1	271	70	78	20.1403
UUUUAUUU	chr10:35317670-35317926(-)$1	256	86	94	20.1403
uuuuauuu	chr2:175957184-175957444(-)$1	260	36	44	20.1403
CUUUAUUU	chr6:149997732-149997987(-)$1	255	85	93	15.7543
UUUUCUUU	chr2:209106702-209106982(-)$1	280	73	81	16.5438
UUUUAUCU	chr1:28887034-28887298(+)$1	264	66	74	15.4035
uuugauuu	chr10:126476145-126476409(-)$1	264	198	206	15.7543
UUUUGUUU	chr12:69661668-69661926(+)$1	258	73	81	16.9824

#otherMatches

#Struct PSSM
========	chr5:65465769-65466057(+)$1	288	95	103	16.4561
pppppfff	chr16:58575373-58575650(-)$1	277	73	81	15.7543
CCCKKDDD	chr11:34475237-34475504(+)$1	267	5	13	15.4035
77777iii	chr21:40610341-40610636(-)$1	295	240	248	15.5789
GGGGMMMM	chr20:17956191-17956482(+)$1	291	36	44	15.6666
%%%%eeee	chr12:98921726-98922045(+)$1	319	130	138	16.9824
GGNNNNND	chr13:39588462-39588736(-)$1	274	14	22	20.1403
^^^^^^^^	chr15:65398561-65398839(-)$1	278	86	94	15.5789
gggggmmm	chr7:139049501-139049776(+)$1	275	23	31	20.1403
FFFFF}FF	chr3:122432003-122432273(+)$1	270	255	263	16.5438
IIII::::	chr4:175238379-175238633(+)$1	254	9	17	15.6666
iiiinnnn	chr3:32571663-32571930(-)$1	267	39	47	16.5438
fffqqqqq	chr3:25656940-25657185(-)$1	245	93	101	15.9298
>>>>eeee	chr5:38970607-38970858(-)$1	251	77	85	20.1403
###eeeee	chr7:97491220-97491540(-)$1	320	127	135	15.6666
zzzzzzzz	chr11:62444532-62444783(-)$1	251	27	35	20.1403
GGG}IIII	chr12:72004418-72004639(-)$1	221	180	188	20.1403
::::::::	chr22:36164259-36164500(-)$1	241	227	235	16.3684
bggggggg	chr7:5262119-5262367(+)$1	248	220	228	16.0175
=4444eee	chr3:52722007-52722291(+)$1	284	92	100	15.9298
JJJJJJYY	chr5:460976-461221(+)$1	245	199	207	15.6666
dyyyyyyy	chr2:97285103-97285406(-)$1	303	97	105	15.6666
@@@@@@@@	chr20:50052013-50052273(-)$1	260	229	237	16.3684
$eeeee[b	chr20:37198194-37198484(+)$1	290	64	72	16.9824
::::::::	chr11:3741907-3742166(-)$1	259	88	96	16.4561
::::::::	chr3:133367920-133368187(-)$1	267	176	184	15.7543
pppppddd	chr5:86688551-86688822(-)$1	271	191	199	20.1403
iiiiiiii	chr6:57005991-57006270(+)$1	279	64	72	15.7543
hhhhhhh!	chr5:138650249-138650459(+)$1	210	75	83	15.7543
HH{CCC{A	chr11:119103056-119103294(+)$1	238	86	94	15.5789
::::::::	chr6:137527894-137528161(-)$1	267	99	107	16.9824
::::::::	chr12:123791703-123792024(-)$1	321	270	278	16.9824
IIII::::	chr2:198283156-198283437(-)$1	281	80	88	20.1403
fffff::f	chr7:77571890-77572147(+)$1	257	190	198	16.0175
HLLLDDDD	chr5:158621671-158621945(-)$1	274	90	98	20.1403
DDD|||||	chr18:1361075-1361334(-)$1	259	196	204	16.9824
::::::::	chr11:95528572-95528820(+)$1	248	20	28	16.9824
Hiiiiiii	chr3:43740650-43740915(+)$1	265	92	100	15.9298
eee[bb[b	chr4:66916-67177(+)$1	261	101	109	15.7543
HHHHH:dd	chr10:28906476-28906742(+)$1	266	50	58	20.1403
mmmmdddd	chrX:70764856-70765110(+)$1	254	86	94	15.6666
GGGGGOOO	chr2:168776631-168776914(-)$1	283	37	45	20.1403
::::::::	chr4:120440530-120440801(+)$1	271	97	105	15.6666
^^^^^^^^	chr10:7845397-7845661(+)$1	264	54	62	16.9824
cccmmmmc	chr1:207956527-207956782(+)$1	255	50	58	16.3684
ff&&&&&&	chr11:87006718-87006965(+)$1	247	70	78	15.9298
odddd:dd	chr10:70513496-70513750(+)$1	254	32	40	16.3684
^^^^^^^e	chr1:10186751-10187016(+)$1	265	68	76	16.3684
[ffffffe	chr1:150815349-150815594(-)$1	245	125	133	16.3684
::::::::	chr1:35870858-35871129(+)$1	271	70	78	20.1403
eee77777	chr10:35317670-35317926(-)$1	256	86	94	20.1403
gggggg$$	chr2:175957184-175957444(-)$1	260	36	44	20.1403
d:::::::	chr6:149997732-149997987(-)$1	255	85	93	15.7543
^^^^^^^^	chr2:209106702-209106982(-)$1	280	73	81	16.5438
::::::::	chr1:28887034-28887298(+)$1	264	66	74	15.4035
nnccc:::	chr10:126476145-126476409(-)$1	264	198	206	15.7543
mmmeeeee	chr12:69661668-69661926(+)$1	258	73	81	16.9824

#DB
))))))))	chr5:65465769-65466057(+)$1	1	95	103	16.4561
.....)))	chr16:58575373-58575650(-)$1	1	73	81	15.7543
(((..(((	chr11:34475237-34475504(+)$1	1	5	13	15.4035
.....)))	chr21:40610341-40610636(-)$1	1	240	248	15.5789
((((....	chr20:17956191-17956482(+)$1	1	36	44	15.6666
....((((	chr12:98921726-98922045(+)$1	1	130	138	16.9824
((.....(	chr13:39588462-39588736(-)$1	1	14	22	20.1403
........	chr15:65398561-65398839(-)$1	1	86	94	15.5789
(((((...	chr7:139049501-139049776(+)$1	1	23	31	20.1403
))))).))	chr3:122432003-122432273(+)$1	1	255	263	16.5438
((((....	chr4:175238379-175238633(+)$1	1	9	17	15.6666
((((....	chr3:32571663-32571930(-)$1	1	39	47	16.5438
(((.....	chr3:25656940-25657185(-)$1	1	93	101	15.9298
....))))	chr5:38970607-38970858(-)$1	1	77	85	20.1403
...(((((	chr7:97491220-97491540(-)$1	1	127	135	15.6666
........	chr11:62444532-62444783(-)$1	1	27	35	20.1403
))).))))	chr12:72004418-72004639(-)$1	1	180	188	20.1403
........	chr22:36164259-36164500(-)$1	1	227	235	16.3684
))))))))	chr7:5262119-5262367(+)$1	1	220	228	16.0175
)....)))	chr3:52722007-52722291(+)$1	1	92	100	15.9298
))))))..	chr5:460976-461221(+)$1	1	199	207	15.6666
(.......	chr2:97285103-97285406(-)$1	1	97	105	15.6666
........	chr20:50052013-50052273(-)$1	1	229	237	16.3684
.(((((.(	chr20:37198194-37198484(+)$1	1	64	72	16.9824
........	chr11:3741907-3742166(-)$1	1	88	96	16.4561
........	chr3:133367920-133368187(-)$1	1	176	184	15.7543
.....)))	chr5:86688551-86688822(-)$1	1	191	199	20.1403
))))))))	chr6:57005991-57006270(+)$1	1	64	72	15.7543
(((((((.	chr5:138650249-138650459(+)$1	1	75	83	15.7543
((.(((.(	chr11:119103056-119103294(+)$1	1	86	94	15.5789
........	chr6:137527894-137528161(-)$1	1	99	107	16.9824
........	chr12:123791703-123792024(-)$1	1	270	278	16.9824
))))....	chr2:198283156-198283437(-)$1	1	80	88	20.1403
)))))..(	chr7:77571890-77572147(+)$1	1	190	198	16.0175
(...((((	chr5:158621671-158621945(-)$1	1	90	98	20.1403
))).....	chr18:1361075-1361334(-)$1	1	196	204	16.9824
........	chr11:95528572-95528820(+)$1	1	20	28	16.9824
((((((((	chr3:43740650-43740915(+)$1	1	92	100	15.9298
(((.((.(	chr4:66916-67177(+)$1	1	101	109	15.7543
(((((.((	chr10:28906476-28906742(+)$1	1	50	58	20.1403
....))))	chrX:70764856-70765110(+)$1	1	86	94	15.6666
(((((...	chr2:168776631-168776914(-)$1	1	37	45	20.1403
........	chr4:120440530-120440801(+)$1	1	97	105	15.6666
........	chr10:7845397-7845661(+)$1	1	54	62	16.9824
(((....)	chr1:207956527-207956782(+)$1	1	50	58	16.3684
((......	chr11:87006718-87006965(+)$1	1	70	78	15.9298
.)))).((	chr10:70513496-70513750(+)$1	1	32	40	16.3684
.......)	chr1:10186751-10187016(+)$1	1	68	76	16.3684
.(((((((	chr1:150815349-150815594(-)$1	1	125	133	16.3684
........	chr1:35870858-35871129(+)$1	1	70	78	20.1403
))).....	chr10:35317670-35317926(-)$1	1	86	94	20.1403
((((((..	chr2:175957184-175957444(-)$1	1	36	44	20.1403
).......	chr6:149997732-149997987(-)$1	1	85	93	15.7543
........	chr2:209106702-209106982(-)$1	1	73	81	16.5438
........	chr1:28887034-28887298(+)$1	1	66	74	15.4035
..)))...	chr10:126476145-126476409(-)$1	1	198	206	15.7543
...)))))	chr12:69661668-69661926(+)$1	1	73	81	16.9824

#PSSM
U : 0.73	u : 0.17	G : 0.03	C : 0.03	A : 0.01	
U : 0.73	u : 0.17	G : 0.07	C : 0.01	
U : 0.68	u : 0.17	A : 0.10	G : 0.03	
U : 0.78	u : 0.14	g : 0.03	G : 0.01	C : 0.01	
A : 0.66	a : 0.10	G : 0.08	C : 0.05	g : 0.05	U : 0.01	u : 0.01	
U : 0.77	u : 0.17	A : 0.05	
U : 0.78	u : 0.17	G : 0.01	C : 0.01	
U : 0.77	u : 0.15	G : 0.01	C : 0.01	a : 0.01	A : 0.01	

#score	971.6842105263166
#seq	57
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_transcript_m2_run1.nuc.txt

#NT
GCUGAGC	chr2:62932849-62933153(+)$1	304	71	78	13.1311
CCUGAGC	chr14:101200385-101200611(+)$1	226	25	32	17.3114
CUUGAGC	chr9:116931317-116931552(+)$1	235	218	225	12.6393
ccugagc	chr17:19091313-19091517(+)$1	204	117	124	17.3114
GCUGAGC	chr19:57325487-57325717(-)$1	230	90	97	13.1311
ccugagc	chr1:91123341-91123553(+)$1	212	67	74	17.3114
CCUCAGC	chr16:30721201-30721466(+)$1	265	134	141	13.4590
CCAGAGC	chr16:2015089-2015396(+)$1	307	149	156	12.6393
GCUGAGC	chr20:62371833-62372101(+)$1	268	194	201	13.1311
ccucagc	chr9:108328022-108328293(+)$1	271	167	174	13.4590
CCUGAAC	chr10:101603535-101603757(+)$1	222	31	38	12.9672
ccugaac	chr17:19093359-19093584(-)$1	225	128	135	12.9672
CCUGUGC	chr19:51856276-51856562(-)$1	286	196	203	14.0327
CCUGAGG	chr20:26189907-26190135(-)$1	228	114	121	13.2950
CCUGGGC	chr17:80007901-80008193(-)$1	292	278	285	14.1147
CCUGAGC	chr17:7082235-7082519(-)$1	284	2	9	17.3114
UCUGAGC	chrX:20154239-20154483(-)$1	244	3	10	12.8852
cccgagc	chr8:99837539-99837771(-)$1	232	134	141	12.7213
CCUCAGC	chr17:74557623-74557886(+)$1	263	219	226	13.4590
CCUGGGC	chr9:116958164-116958379(+)$1	215	89	96	14.1147
ccugagc	chr17:19091317-19091520(+)$1	203	113	120	17.3114
CCUGAGU	chr16:78247730-78247942(+)$1	212	8	15	13.0491
CCUGUGC	chr16:2814528-2814767(+)$1	239	213	220	14.0327
CCUGGGC	chr11:67810715-67811052(+)$1	337	277	284	14.1147
ccugagc	chr1:91123325-91123541(+)$1	216	83	90	17.3114
CAUGAGC	chr4:1806517-1806754(+)$1	237	56	63	12.7213
CCUGUGC	chr21:46915219-46915445(+)$1	226	35	42	14.0327
ccugagc	chr17:19091310-19091513(+)$1	203	120	127	17.3114
CCUGGGC	chr1:67895721-67896023(-)$1	302	43	50	14.1147
CCCGAGC	chr21:9826124-9826355(+)$1	231	88	95	12.7213
CCUGAGC	chr1:234565838-234566131(-)$1	293	165	172	17.3114
ccugaac	chr17:19093334-19093559(-)$1	225	103	110	12.9672
ccugaac	chr17:19093392-19093609(-)$1	217	153	160	12.9672
ccugagc	chr17:19091330-19091536(+)$1	206	100	107	17.3114
ACUGAGC	chr12:104341309-104341519(+)$1	210	1	8	12.8852
CCUCAGC	chrX:53589712-53589973(-)$1	261	144	151	13.4590
CCUGGGC	chr3:184044922-184045214(+)$1	292	36	43	14.1147
GCUGAGC	chr2:11755225-11755468(+)$1	243	147	154	13.1311
CCUGAGC	chr20:31022371-31022647(+)$1	276	166	173	17.3114
CCUGUGC	chr7:103629635-103629887(-)$1	252	197	204	14.0327
CCUGGGC	chr17:74383439-74383714(+)$1	275	230	237	14.1147
CCUGAGC	chr7:127341134-127341411(+)$1	277	83	90	17.3114
CCUGAGG	chr20:26189890-26190107(-)$1	217	86	93	13.2950
CCUGAGG	chr1:113231953-113232207(+)$1	254	197	204	13.2950
CCUGAGC	chr2:220435706-220435980(-)$1	274	196	203	17.3114
CCUGAGC	chrX:20154132-20154423(-)$1	291	230	237	17.3114
CCUCAGC	chr20:60885227-60885462(-)$1	235	12	19	13.4590
CCUGCGC	chr20:60913242-60913494(-)$1	252	0	7	13.7049
CCUGUGC	chr16:30087575-30087857(+)$1	282	66	73	14.0327
CCUGAGC	chr2:133015106-133015364(-)$1	258	58	65	17.3114
CCUCAGC	chr9:116929961-116930193(+)$1	232	32	39	13.4590
CCUCAGC	chr2:232326498-232326771(-)$1	273	83	90	13.4590
CCUGCGC	chr16:28846373-28846609(+)$1	236	141	148	13.7049
CCUGGGC	chr17:1665246-1665480(+)$1	234	212	219	14.1147
ccugagc	chr17:19091288-19091510(+)$1	222	142	149	17.3114
CCUGAGG	chr16:78247742-78247956(+)$1	214	18	25	13.2950
CCUGAGU	chr20:60913049-60913287(-)$1	238	149	156	13.0491
CCUGUGC	chr20:60905444-60905667(-)$1	223	196	203	14.0327
CCUGAGG	chr21:47611929-47612176(-)$1	247	58	65	13.2950
CCUGAGC	chr11:93454803-93455081(+)$1	278	219	226	17.3114

#otherMatches

#Struct PSSM
gggg[bb	chr3:167750212-167750481(-)$1	269	123	130	12.7213
eee[a[a	chr2:62932849-62933153(+)$1	304	71	78	13.1311
eeee]cc	chr14:101200385-101200611(+)$1	226	25	32	17.3114
dddd]a]	chr9:116931317-116931552(+)$1	235	218	225	12.6393
ddd333d	chr17:19091313-19091517(+)$1	204	117	124	17.3114
mmmmddd	chr19:57325487-57325717(-)$1	230	90	97	13.1311
ooodddd	chr1:91123341-91123553(+)$1	212	67	74	17.3114
EEEEE::	chr16:30721201-30721466(+)$1	265	134	141	13.4590
!ccc[cc	chr16:2015089-2015396(+)$1	307	149	156	12.6393
hhhh+++	chr20:62371833-62372101(+)$1	268	194	201	13.1311
DDD::bb	chr9:108328022-108328293(+)$1	271	167	174	13.4590
bbooooo	chr10:101603535-101603757(+)$1	222	31	38	12.9672
ddd333d	chr17:19093359-19093584(-)$1	225	128	135	12.9672
!bb[ddd	chr19:51856276-51856562(-)$1	286	196	203	14.0327
IIIIIII	chr20:26189907-26190135(-)$1	228	114	121	13.2950
ooodddd	chr17:80007901-80008193(-)$1	292	278	285	14.1147
eee[ccc	chr17:7082235-7082519(-)$1	284	2	9	17.3114
DDD::gg	chrX:20154239-20154483(-)$1	244	3	10	12.8852
ddd!!cc	chr8:99837539-99837771(-)$1	232	134	141	12.7213
:gggggg	chr17:74557623-74557886(+)$1	263	219	226	13.4590
22dddd5	chr9:116958164-116958379(+)$1	215	89	96	14.1147
ddd333d	chr17:19091317-19091520(+)$1	203	113	120	17.3114
CCLLLFF	chr16:78247730-78247942(+)$1	212	8	15	13.0491
ZZCCC}C	chr16:2814528-2814767(+)$1	239	213	220	14.0327
eee!!==	chr11:67810715-67811052(+)$1	337	277	284	14.1147
ooodddd	chr1:91123325-91123541(+)$1	216	83	90	17.3114
NNBB{DD	chr4:1806517-1806754(+)$1	237	56	63	12.7213
eee"""d	chr21:46915219-46915445(+)$1	226	35	42	14.0327
:::::bb	chr17:19091310-19091513(+)$1	203	120	127	17.3114
ddddqqq	chr1:67895721-67896023(-)$1	302	43	50	14.1147
dgggggg	chr21:9826124-9826355(+)$1	231	88	95	12.7213
cca[ccc	chr1:234565838-234566131(-)$1	293	165	172	17.3114
JJJbb[c	chr17:19093334-19093559(-)$1	225	103	110	12.9672
ddd333d	chr17:19093392-19093609(-)$1	217	153	160	12.9672
JJJbb[c	chr17:19091330-19091536(+)$1	206	100	107	17.3114
b[fffff	chr12:104341309-104341519(+)$1	210	1	8	12.8852
bbeeeee	chrX:53589712-53589973(-)$1	261	144	151	13.4590
]hhhhhh	chr3:184044922-184045214(+)$1	292	36	43	14.1147
cc:::DD	chr2:11755225-11755468(+)$1	243	147	154	13.1311
]ccc]bb	chr20:31022371-31022647(+)$1	276	166	173	17.3114
iiiiiip	chr7:103629635-103629887(-)$1	252	197	204	14.0327
eeeeddd	chr17:74383439-74383714(+)$1	275	230	237	14.1147
b[bb[bb	chr7:127341134-127341411(+)$1	277	83	90	17.3114
ccmmmmc	chr20:26189890-26190107(-)$1	217	86	93	13.2950
ccbb]ff	chr1:113231953-113232207(+)$1	254	197	204	13.2950
dd"""cc	chr2:220435706-220435980(-)$1	274	196	203	17.3114
CC}BBDD	chrX:20154132-20154423(-)$1	291	230	237	17.3114
dddnnnn	chr20:60885227-60885462(-)$1	235	12	19	13.4590
::ccc%%	chr20:60913242-60913494(-)$1	252	0	7	13.7049
dd[ffff	chr16:30087575-30087857(+)$1	282	66	73	14.0327
####bbg	chr2:133015106-133015364(-)$1	258	58	65	17.3114
cc333ff	chr9:116929961-116930193(+)$1	232	32	39	13.4590
===))))	chr2:232326498-232326771(-)$1	273	83	90	13.4590
]ddddFF	chr16:28846373-28846609(+)$1	236	141	148	13.7049
gggg!!b	chr17:1665246-1665480(+)$1	234	212	219	14.1147
ddd333d	chr17:19091288-19091510(+)$1	222	142	149	17.3114
h####bb	chr16:78247742-78247956(+)$1	214	18	25	13.2950
d888888	chr20:60913049-60913287(-)$1	238	149	156	13.0491
eeeeecc	chr20:60905444-60905667(-)$1	223	196	203	14.0327
hhhmmmm	chr21:47611929-47612176(-)$1	247	58	65	13.2950
cc[bb[e	chr11:93454803-93455081(+)$1	278	219	226	17.3114

#DB
((((.((	chr3:167750212-167750481(-)$1	1	123	130	12.7213
(((.(.(	chr2:62932849-62933153(+)$1	1	71	78	13.1311
)))).))	chr14:101200385-101200611(+)$1	1	25	32	17.3114
)))).).	chr9:116931317-116931552(+)$1	1	218	225	12.6393
)))...)	chr17:19091313-19091517(+)$1	1	117	124	17.3114
....)))	chr19:57325487-57325717(-)$1	1	90	97	13.1311
...))))	chr1:91123341-91123553(+)$1	1	67	74	17.3114
)))))..	chr16:30721201-30721466(+)$1	1	134	141	13.4590
.(((.((	chr16:2015089-2015396(+)$1	1	149	156	12.6393
((((...	chr20:62371833-62372101(+)$1	1	194	201	13.1311
)))..((	chr9:108328022-108328293(+)$1	1	167	174	13.4590
((.....	chr10:101603535-101603757(+)$1	1	31	38	12.9672
)))...)	chr17:19093359-19093584(-)$1	1	128	135	12.9672
.((.(((	chr19:51856276-51856562(-)$1	1	196	203	14.0327
)))))))	chr20:26189907-26190135(-)$1	1	114	121	13.2950
...))))	chr17:80007901-80008193(-)$1	1	278	285	14.1147
(((.(((	chr17:7082235-7082519(-)$1	1	2	9	17.3114
(((..((	chrX:20154239-20154483(-)$1	1	3	10	12.8852
(((..((	chr8:99837539-99837771(-)$1	1	134	141	12.7213
.((((((	chr17:74557623-74557886(+)$1	1	219	226	13.4590
..)))).	chr9:116958164-116958379(+)$1	1	89	96	14.1147
)))...)	chr17:19091317-19091520(+)$1	1	113	120	17.3114
((...((	chr16:78247730-78247942(+)$1	1	8	15	13.0491
..))).)	chr16:2814528-2814767(+)$1	1	213	220	14.0327
(((..((	chr11:67810715-67811052(+)$1	1	277	284	14.1147
...))))	chr1:91123325-91123541(+)$1	1	83	90	17.3114
..((.((	chr4:1806517-1806754(+)$1	1	56	63	12.7213
(((...(	chr21:46915219-46915445(+)$1	1	35	42	14.0327
.....((	chr17:19091310-19091513(+)$1	1	120	127	17.3114
((((...	chr1:67895721-67896023(-)$1	1	43	50	14.1147
)))))))	chr21:9826124-9826355(+)$1	1	88	95	12.7213
))(.(((	chr1:234565838-234566131(-)$1	1	165	172	17.3114
(((((.(	chr17:19093334-19093559(-)$1	1	103	110	12.9672
)))...)	chr17:19093392-19093609(-)$1	1	153	160	12.9672
(((((.(	chr17:19091330-19091536(+)$1	1	100	107	17.3114
(.(((((	chr12:104341309-104341519(+)$1	1	1	8	12.8852
)))))))	chrX:53589712-53589973(-)$1	1	144	151	13.4590
.))))))	chr3:184044922-184045214(+)$1	1	36	43	14.1147
))...))	chr2:11755225-11755468(+)$1	1	147	154	13.1311
.))).))	chr20:31022371-31022647(+)$1	1	166	173	17.3114
((((((.	chr7:103629635-103629887(-)$1	1	197	204	14.0327
)))))))	chr17:74383439-74383714(+)$1	1	230	237	14.1147
(.((.((	chr7:127341134-127341411(+)$1	1	83	90	17.3114
((....)	chr20:26189890-26190107(-)$1	1	86	93	13.2950
)))).))	chr1:113231953-113232207(+)$1	1	197	204	13.2950
((...((	chr2:220435706-220435980(-)$1	1	196	203	17.3114
)).))))	chrX:20154132-20154423(-)$1	1	230	237	17.3114
(((....	chr20:60885227-60885462(-)$1	1	12	19	13.4590
..(((..	chr20:60913242-60913494(-)$1	1	0	7	13.7049
((.((((	chr16:30087575-30087857(+)$1	1	66	73	14.0327
....(((	chr2:133015106-133015364(-)$1	1	58	65	17.3114
))...))	chr9:116929961-116930193(+)$1	1	32	39	13.4590
(((....	chr2:232326498-232326771(-)$1	1	83	90	13.4590
.))))))	chr16:28846373-28846609(+)$1	1	141	148	13.7049
((((..(	chr17:1665246-1665480(+)$1	1	212	219	14.1147
)))...)	chr17:19091288-19091510(+)$1	1	142	149	17.3114
(....((	chr16:78247742-78247956(+)$1	1	18	25	13.2950
)......	chr20:60913049-60913287(-)$1	1	149	156	13.0491
(((((((	chr20:60905444-60905667(-)$1	1	196	203	14.0327
(((....	chr21:47611929-47612176(-)$1	1	58	65	13.2950
((.((.(	chr11:93454803-93455081(+)$1	1	219	226	17.3114

#PSSM
C : 0.70	c : 0.19	G : 0.06	U : 0.01	A : 0.01	
C : 0.75	c : 0.19	A : 0.03	U : 0.01	
U : 0.77	u : 0.18	A : 0.01	c : 0.01	C : 0.01	
G : 0.70	g : 0.18	C : 0.09	c : 0.01	
A : 0.55	a : 0.19	G : 0.11	U : 0.09	C : 0.03	
G : 0.78	g : 0.14	a : 0.04	A : 0.01	
C : 0.68	c : 0.19	G : 0.08	U : 0.03	

#score	880.5081967213116
#seq	61
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_UTR_m3_run2.nuc.txt

#NT
AAAAU	chr21:38471281-38471593(+)$1	312	179	184	15.0000
AAAAU	chrX:135956575-135956803(-)$1	228	2	7	15.0000
AAAAU	chr7:26229787-26230067(-)$1	280	110	115	15.0000
AAAAU	chr19:1270712-1271009(+)$1	297	57	62	15.0000
AAAAU	chr4:762434-762675(-)$1	241	8	13	15.0000
AAAAU	chr19:1435025-1435237(+)$1	212	123	128	15.0000
AAAAU	chrX:141290188-141290405(-)$1	217	22	27	15.0000
AAAAU	chr2:178087689-178087945(+)$1	256	133	138	15.0000
AAAAU	chr17:45699405-45699687(+)$1	282	61	66	15.0000
AAAAU	chr1:192989370-192989667(-)$1	297	193	198	15.0000
AAAAU	chr1:155885159-155885383(-)$1	224	160	165	15.0000
AAAAU	chr19:1434988-1435205(+)$1	217	160	165	15.0000
aaaau	chr5:110833265-110833565(-)$1	300	203	208	15.0000
AAAAU	chr8:126034292-126034565(+)$1	273	86	91	15.0000
AAAAU	chr7:26229492-26229759(-)$1	267	38	43	15.0000
AAAAU	chr17:45699296-45699599(+)$1	303	170	175	15.0000
AAAAU	chrX:135956554-135956775(-)$1	221	104	109	15.0000
AAAAU	chr5:40826123-40826381(-)$1	258	26	31	15.0000
AAAAU	chr17:29109685-29109965(+)$1	280	191	196	15.0000
AAAAU	chr6:111216018-111216314(+)$1	296	158	163	15.0000
AAAAU	chr10:35298778-35299018(-)$1	240	118	123	15.0000
AAAAU	chr8:126034268-126034492(+)$1	224	110	115	15.0000
AAAAU	chr2:178088247-178088483(+)$1	236	196	201	15.0000
aaaau	chr7:44048987-44049274(-)$1	287	7	12	15.0000
AAAAU	chr1:155885120-155885359(-)$1	239	136	141	15.0000
AAAAU	chr16:89017732-89018016(-)$1	284	130	135	15.0000
AAAAU	chr9:134133373-134133620(-)$1	247	137	142	15.0000
AAAAU	chr4:95585567-95585840(+)$1	273	34	39	15.0000
AAAAU	chrX:110931139-110931398(+)$1	259	44	49	15.0000
AAAAU	chr8:23429670-23429910(+)$1	240	21	26	15.0000
AAAAU	chr4:79835998-79836229(+)$1	231	15	20	15.0000
AAAAU	chr9:114985260-114985487(-)$1	227	17	22	15.0000
AAAAU	chr19:1435005-1435225(+)$1	220	143	148	15.0000
AAAAU	chr14:104152090-104152366(+)$1	276	123	128	15.0000
aaaaU	chr6:7283182-7283409(-)$1	227	79	84	15.0000
AAAAU	chr12:22841057-22841308(+)$1	251	232	237	15.0000
AAAAU	chr15:49032587-49032892(-)$1	305	164	169	15.0000
AAAAU	chr4:762599-762850(-)$1	251	109	114	15.0000
AAAAU	chr5:86687606-86687879(-)$1	273	17	22	15.0000
AAAAU	chr15:34671240-34671506(-)$1	266	254	259	15.0000
AAAAU	chr1:93619260-93619517(-)$1	257	75	80	15.0000
aaaau	chr1:21102001-21102260(-)$1	259	83	88	15.0000
aaaau	chr7:99919236-99919519(-)$1	283	82	87	15.0000
AAAAU	chr2:175006448-175006754(-)$1	306	209	214	15.0000

#otherMatches

#Struct PSSM
:::::	chr1:241792482-241792755(-)$1	273	4	9	15.0000
:::::	chr21:38471281-38471593(+)$1	312	179	184	15.0000
:::::	chrX:135956575-135956803(-)$1	228	2	7	15.0000
ooooo	chr7:26229787-26230067(-)$1	280	110	115	15.0000
+++++	chr19:1270712-1271009(+)$1	297	57	62	15.0000
nnnee	chr4:762434-762675(-)$1	241	8	13	15.0000
::::G	chr19:1435025-1435237(+)$1	212	123	128	15.0000
gggg[	chrX:141290188-141290405(-)$1	217	22	27	15.0000
%%%%%	chr2:178087689-178087945(+)$1	256	133	138	15.0000
c::::	chr17:45699405-45699687(+)$1	282	61	66	15.0000
:::::	chr1:192989370-192989667(-)$1	297	193	198	15.0000
:::::	chr1:155885159-155885383(-)$1	224	160	165	15.0000
:::::	chr19:1434988-1435205(+)$1	217	160	165	15.0000
+++++	chr5:110833265-110833565(-)$1	300	203	208	15.0000
dd22d	chr8:126034292-126034565(+)$1	273	86	91	15.0000
lll==	chr7:26229492-26229759(-)$1	267	38	43	15.0000
c5555	chr17:45699296-45699599(+)$1	303	170	175	15.0000
::eee	chrX:135956554-135956775(-)$1	221	104	109	15.0000
mmmmc	chr5:40826123-40826381(-)$1	258	26	31	15.0000
:::::	chr17:29109685-29109965(+)$1	280	191	196	15.0000
HHHHH	chr6:111216018-111216314(+)$1	296	158	163	15.0000
dd[ff	chr10:35298778-35299018(-)$1	240	118	123	15.0000
e22hh	chr8:126034268-126034492(+)$1	224	110	115	15.0000
DDDYY	chr2:178088247-178088483(+)$1	236	196	201	15.0000
:gggg	chr7:44048987-44049274(-)$1	287	7	12	15.0000
!cccm	chr1:155885120-155885359(-)$1	239	136	141	15.0000
:::::	chr16:89017732-89018016(-)$1	284	130	135	15.0000
>>>>d	chr9:134133373-134133620(-)$1	247	137	142	15.0000
ppppf	chr4:95585567-95585840(+)$1	273	34	39	15.0000
JJJJJ	chrX:110931139-110931398(+)$1	259	44	49	15.0000
::::e	chr8:23429670-23429910(+)$1	240	21	26	15.0000
fffff	chr4:79835998-79836229(+)$1	231	15	20	15.0000
GGG::	chr9:114985260-114985487(-)$1	227	17	22	15.0000
:::::	chr19:1435005-1435225(+)$1	220	143	148	15.0000
:::::	chr14:104152090-104152366(+)$1	276	123	128	15.0000
:::::	chr6:7283182-7283409(-)$1	227	79	84	15.0000
IIZZZ	chr12:22841057-22841308(+)$1	251	232	237	15.0000
999ee	chr15:49032587-49032892(-)$1	305	164	169	15.0000
epppp	chr4:762599-762850(-)$1	251	109	114	15.0000
qqqqq	chr5:86687606-86687879(-)$1	273	17	22	15.0000
:::::	chr15:34671240-34671506(-)$1	266	254	259	15.0000
c5555	chr1:93619260-93619517(-)$1	257	75	80	15.0000
J::::	chr1:21102001-21102260(-)$1	259	83	88	15.0000
f6666	chr7:99919236-99919519(-)$1	283	82	87	15.0000
mmmgg	chr2:175006448-175006754(-)$1	306	209	214	15.0000

#DB
.....	chr1:241792482-241792755(-)$1	1	4	9	15.0000
.....	chr21:38471281-38471593(+)$1	1	179	184	15.0000
.....	chrX:135956575-135956803(-)$1	1	2	7	15.0000
.....	chr7:26229787-26230067(-)$1	1	110	115	15.0000
.....	chr19:1270712-1271009(+)$1	1	57	62	15.0000
...))	chr4:762434-762675(-)$1	1	8	13	15.0000
....)	chr19:1435025-1435237(+)$1	1	123	128	15.0000
((((.	chrX:141290188-141290405(-)$1	1	22	27	15.0000
.....	chr2:178087689-178087945(+)$1	1	133	138	15.0000
)....	chr17:45699405-45699687(+)$1	1	61	66	15.0000
.....	chr1:192989370-192989667(-)$1	1	193	198	15.0000
.....	chr1:155885159-155885383(-)$1	1	160	165	15.0000
.....	chr19:1434988-1435205(+)$1	1	160	165	15.0000
.....	chr5:110833265-110833565(-)$1	1	203	208	15.0000
))..)	chr8:126034292-126034565(+)$1	1	86	91	15.0000
...))	chr7:26229492-26229759(-)$1	1	38	43	15.0000
)....	chr17:45699296-45699599(+)$1	1	170	175	15.0000
..(((	chrX:135956554-135956775(-)$1	1	104	109	15.0000
....)	chr5:40826123-40826381(-)$1	1	26	31	15.0000
.....	chr17:29109685-29109965(+)$1	1	191	196	15.0000
(((((	chr6:111216018-111216314(+)$1	1	158	163	15.0000
((.((	chr10:35298778-35299018(-)$1	1	118	123	15.0000
)..))	chr8:126034268-126034492(+)$1	1	110	115	15.0000
)))..	chr2:178088247-178088483(+)$1	1	196	201	15.0000
.((((	chr7:44048987-44049274(-)$1	1	7	12	15.0000
.(((.	chr1:155885120-155885359(-)$1	1	136	141	15.0000
.....	chr16:89017732-89018016(-)$1	1	130	135	15.0000
....)	chr9:134133373-134133620(-)$1	1	137	142	15.0000
....)	chr4:95585567-95585840(+)$1	1	34	39	15.0000
(((((	chrX:110931139-110931398(+)$1	1	44	49	15.0000
....(	chr8:23429670-23429910(+)$1	1	21	26	15.0000
(((((	chr4:79835998-79836229(+)$1	1	15	20	15.0000
(((..	chr9:114985260-114985487(-)$1	1	17	22	15.0000
.....	chr19:1435005-1435225(+)$1	1	143	148	15.0000
.....	chr14:104152090-104152366(+)$1	1	123	128	15.0000
.....	chr6:7283182-7283409(-)$1	1	79	84	15.0000
))...	chr12:22841057-22841308(+)$1	1	232	237	15.0000
...))	chr15:49032587-49032892(-)$1	1	164	169	15.0000
(....	chr4:762599-762850(-)$1	1	109	114	15.0000
.....	chr5:86687606-86687879(-)$1	1	17	22	15.0000
.....	chr15:34671240-34671506(-)$1	1	254	259	15.0000
)....	chr1:93619260-93619517(-)$1	1	75	80	15.0000
)....	chr1:21102001-21102260(-)$1	1	83	88	15.0000
)....	chr7:99919236-99919519(-)$1	1	82	87	15.0000
...))	chr2:175006448-175006754(-)$1	1	209	214	15.0000

#PSSM
A : 0.88	a : 0.11	
A : 0.88	a : 0.11	
A : 0.88	a : 0.11	
A : 0.88	a : 0.11	
U : 0.91	u : 0.08	

#score	675.0000000000001
#seq	45
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_UTR_m2_run1.nuc.txt

#NT
GCU	chr3:184045273-184045523(+)$1	250	0	3	8.9999
GCU	chr12:57897955-57898183(+)$1	228	135	138	8.9999
GCU	chr7:94294563-94294795(+)$1	232	10	13	8.9999
GCU	chr2:44116873-44117113(-)$1	240	28	31	8.9999
GCU	chr5:151176686-151176995(+)$1	309	2	5	8.9999
GCU	chr17:4577791-4578050(-)$1	259	6	9	8.9999
GCU	chr14:23239301-23239539(+)$1	238	108	111	8.9999
GCU	chr1:156294670-156294909(-)$1	239	12	15	8.9999
GCU	chr5:179263348-179263649(+)$1	301	3	6	8.9999
GCU	chr11:57076244-57076593(-)$1	349	4	7	8.9999
GCU	chr2:27598688-27598932(+)$1	244	90	93	8.9999
GCU	chr8:22432805-22433078(+)$1	273	24	27	8.9999
GCU	chr16:3724298-3724578(-)$1	280	0	3	8.9999
GCU	chr3:49137775-49137991(-)$1	216	10	13	8.9999
GCU	chr3:48636968-48637197(-)$1	229	85	88	8.9999
GCU	chr16:56501038-56501305(+)$1	267	16	19	8.9999
GCU	chr5:33462120-33462372(+)$1	252	8	11	8.9999
GCU	chr1:45976860-45977091(-)$1	231	13	16	8.9999
GCU	chr10:88854288-88854552(-)$1	264	16	19	8.9999
GCU	chr17:7480920-7481124(+)$1	204	58	61	8.9999
GCU	chr12:69993541-69993789(+)$1	248	71	74	8.9999
GCU	chr7:100276270-100276555(+)$1	285	55	58	8.9999
GCU	chr11:64979262-64979541(+)$1	279	11	14	8.9999
GCU	chr5:150505862-150506079(-)$1	217	39	42	8.9999
GCU	chr14:94528744-94529043(-)$1	299	144	147	8.9999
GCU	chr3:58415333-58415555(-)$1	222	74	77	8.9999
GCU	chr14:24656881-24657101(-)$1	220	21	24	8.9999
GCU	chr16:85834713-85834942(+)$1	229	20	23	8.9999
GCU	chr12:121431866-121432147(+)$1	281	12	15	8.9999
GCU	chr11:18428655-18428870(+)$1	215	160	163	8.9999
GCU	chr19:49510456-49510724(+)$1	268	13	16	8.9999
GCU	chr17:18155685-18155917(-)$1	232	28	31	8.9999
GCU	chr20:33867703-33867990(-)$1	287	26	29	8.9999
GCU	chr17:4792877-4793139(+)$1	262	13	16	8.9999
GCU	chr3:184041467-184041730(+)$1	263	119	122	8.9999
gcu	chr11:57067074-57067319(-)$1	245	12	15	8.9999
GCU	chr11:62334176-62334403(-)$1	227	4	7	8.9999
GCU	chr9:95042946-95043219(-)$1	273	110	113	8.9999
GCU	chr3:58415355-58415618(-)$1	263	22	25	8.9999
GCU	chr14:75602362-75602609(-)$1	247	37	40	8.9999
GCU	chr14:24654329-24654618(-)$1	289	29	32	8.9999
GCU	chr18:211206-211476(+)$1	270	15	18	8.9999
GCU	chr18:12344041-12344348(-)$1	307	72	75	8.9999
GCU	chr5:167927520-167927781(+)$1	261	140	143	8.9999
GCU	chr17:75496288-75496528(+)$1	240	217	220	8.9999
GCU	chr2:171819248-171819530(+)$1	282	15	18	8.9999
GCU	chr19:47112906-47113137(+)$1	231	156	159	8.9999
GCU	chrX:153580251-153580484(-)$1	233	29	32	8.9999
GCU	chr19:5667271-5667562(+)$1	291	200	203	8.9999
GCU	chr19:48374599-48374863(-)$1	264	24	27	8.9999
GCU	chr21:45746837-45747084(+)$1	247	14	17	8.9999
GCU	chr18:29178612-29178869(+)$1	257	122	125	8.9999
GCU	chr3:184049017-184049252(+)$1	235	1	4	8.9999
GCU	chr16:1749162-1749457(+)$1	295	15	18	8.9999
GCU	chr2:96950140-96950404(-)$1	264	116	119	8.9999
GCU	chr2:98264437-98264675(+)$1	238	55	58	8.9999
GCU	chr14:23395812-23396062(-)$1	250	166	169	8.9999
GCU	chr19:8550385-8550713(+)$1	328	23	26	8.9999
GCU	chr12:6978162-6978369(+)$1	207	63	66	8.9999
GCU	chr12:6626844-6627091(+)$1	247	1	4	8.9999
GCU	chr12:6861387-6861628(-)$1	241	22	25	8.9999
GCU	chr17:4442855-4443118(-)$1	263	73	76	8.9999
GCU	chr5:150511934-150512230(-)$1	296	24	27	8.9999
GCU	chr2:74592177-74592468(-)$1	291	15	18	8.9999
GCU	chrX:153587609-153587862(-)$1	253	38	41	8.9999
GCU	chrX:153580654-153580899(-)$1	245	15	18	8.9999
GCU	chr1:156281748-156281998(-)$1	250	146	149	8.9999
GCU	chrX:153583258-153583506(-)$1	248	21	24	8.9999
GCU	chr7:94294956-94295168(+)$1	212	89	92	8.9999
GCU	chr12:103310747-103310976(-)$1	229	1	4	8.9999
GCU	chr19:811125-811430(+)$1	305	21	24	8.9999
GCU	chr5:137906615-137906890(-)$1	275	62	65	8.9999
gcu	chr17:18154647-18154890(-)$1	243	7	10	8.9999
GCU	chr19:51853537-51853746(-)$1	209	58	61	8.9999
GCU	chr17:40061675-40061926(-)$1	251	48	51	8.9999
GCU	chr17:26900076-26900340(-)$1	264	12	15	8.9999
GCU	chr10:51581170-51581387(+)$1	217	27	30	8.9999
GCU	chr6:114181571-114181868(+)$1	297	192	195	8.9999
GCU	chr4:99997342-99997568(-)$1	226	59	62	8.9999
GCU	chr3:47894307-47894580(-)$1	273	166	169	8.9999
GCU	chr2:63821521-63821778(+)$1	257	133	136	8.9999
GCU	chr19:18547401-18547659(-)$1	258	24	27	8.9999
gcu	chr5:179132609-179132867(+)$1	258	55	58	8.9999
GCU	chr15:72499110-72499322(-)$1	212	35	38	8.9999
GCU	chr9:136528741-136529013(-)$1	272	5	8	8.9999
GCU	chr12:22837724-22838065(+)$1	341	8	11	8.9999
GCU	chr19:47700398-47700639(+)$1	241	57	60	8.9999
GCU	chr18:43666910-43667160(-)$1	250	54	57	8.9999
GCU	chr15:72502609-72502876(-)$1	267	6	9	8.9999
GCU	chr17:72764188-72764474(+)$1	286	29	32	8.9999
GCU	chr11:18425198-18425419(+)$1	221	68	71	8.9999
GCU	chr10:13320155-13320439(-)$1	284	103	106	8.9999
GCU	chr11:18420879-18421092(+)$1	213	37	40	8.9999
GCU	chr5:138118846-138119126(+)$1	280	97	100	8.9999
GCU	chr19:54652058-54652371(+)$1	313	7	10	8.9999
GCU	chr6:135308689-135309027(-)$1	338	56	59	8.9999
GCU	chr19:8553509-8553780(+)$1	271	72	75	8.9999
GCU	chr20:1434763-1435047(-)$1	284	113	116	8.9999

#otherMatches

#Struct PSSM
ddd	chr1:156290544-156290795(-)$1	251	12	15	8.9999
:::	chr3:184045273-184045523(+)$1	250	0	3	8.9999
dpp	chr12:57897955-57898183(+)$1	228	135	138	8.9999
HH:	chr7:94294563-94294795(+)$1	232	10	13	8.9999
EE{	chr2:44116873-44117113(-)$1	240	28	31	8.9999
:::	chr5:151176686-151176995(+)$1	309	2	5	8.9999
mmm	chr17:4577791-4578050(-)$1	259	6	9	8.9999
cll	chr14:23239301-23239539(+)$1	238	108	111	8.9999
GGG	chr1:156294670-156294909(-)$1	239	12	15	8.9999
EEE	chr5:179263348-179263649(+)$1	301	3	6	8.9999
HHH	chr11:57076244-57076593(-)$1	349	4	7	8.9999
ddd	chr2:27598688-27598932(+)$1	244	90	93	8.9999
[a[	chr8:22432805-22433078(+)$1	273	24	27	8.9999
EEE	chr16:3724298-3724578(-)$1	280	0	3	8.9999
dd[	chr3:49137775-49137991(-)$1	216	10	13	8.9999
ddd	chr3:48636968-48637197(-)$1	229	85	88	8.9999
eee	chr16:56501038-56501305(+)$1	267	16	19	8.9999
"dd	chr5:33462120-33462372(+)$1	252	8	11	8.9999
EEE	chr1:45976860-45977091(-)$1	231	13	16	8.9999
eee	chr10:88854288-88854552(-)$1	264	16	19	8.9999
]bb	chr17:7480920-7481124(+)$1	204	58	61	8.9999
hhh	chr12:69993541-69993789(+)$1	248	71	74	8.9999
B{H	chr7:100276270-100276555(+)$1	285	55	58	8.9999
qqq	chr11:64979262-64979541(+)$1	279	11	14	8.9999
hhh	chr5:150505862-150506079(-)$1	217	39	42	8.9999
rrr	chr14:94528744-94529043(-)$1	299	144	147	8.9999
ggg	chr3:58415333-58415555(-)$1	222	74	77	8.9999
EEE	chr14:24656881-24657101(-)$1	220	21	24	8.9999
BBL	chr16:85834713-85834942(+)$1	229	20	23	8.9999
JJJ	chr12:121431866-121432147(+)$1	281	12	15	8.9999
ebb	chr11:18428655-18428870(+)$1	215	160	163	8.9999
"a[	chr19:49510456-49510724(+)$1	268	13	16	8.9999
ccc	chr17:18155685-18155917(-)$1	232	28	31	8.9999
fff	chr20:33867703-33867990(-)$1	287	26	29	8.9999
fff	chr17:4792877-4793139(+)$1	262	13	16	8.9999
nnn	chr3:184041467-184041730(+)$1	263	119	122	8.9999
:::	chr11:57067074-57067319(-)$1	245	12	15	8.9999
D{F	chr11:62334176-62334403(-)$1	227	4	7	8.9999
>hh	chr9:95042946-95043219(-)$1	273	110	113	8.9999
idd	chr3:58415355-58415618(-)$1	263	22	25	8.9999
eee	chr14:75602362-75602609(-)$1	247	37	40	8.9999
JJJ	chr14:24654329-24654618(-)$1	289	29	32	8.9999
FFF	chr18:211206-211476(+)$1	270	15	18	8.9999
fff	chr18:12344041-12344348(-)$1	307	72	75	8.9999
ccc	chr5:167927520-167927781(+)$1	261	140	143	8.9999
fff	chr17:75496288-75496528(+)$1	240	217	220	8.9999
B{D	chr2:171819248-171819530(+)$1	282	15	18	8.9999
EEE	chr19:47112906-47113137(+)$1	231	156	159	8.9999
cc]	chrX:153580251-153580484(-)$1	233	29	32	8.9999
ldd	chr19:5667271-5667562(+)$1	291	200	203	8.9999
::d	chr19:48374599-48374863(-)$1	264	24	27	8.9999
fff	chr21:45746837-45747084(+)$1	247	14	17	8.9999
a!!	chr18:29178612-29178869(+)$1	257	122	125	8.9999
:::	chr3:184049017-184049252(+)$1	235	1	4	8.9999
===	chr16:1749162-1749457(+)$1	295	15	18	8.9999
:::	chr2:96950140-96950404(-)$1	264	116	119	8.9999
[bb	chr2:98264437-98264675(+)$1	238	55	58	8.9999
===	chr14:23395812-23396062(-)$1	250	166	169	8.9999
eee	chr19:8550385-8550713(+)$1	328	23	26	8.9999
ccn	chr12:6978162-6978369(+)$1	207	63	66	8.9999
::E	chr12:6626844-6627091(+)$1	247	1	4	8.9999
ddd	chr12:6861387-6861628(-)$1	241	22	25	8.9999
sss	chr17:4442855-4443118(-)$1	263	73	76	8.9999
a$$	chr5:150511934-150512230(-)$1	296	24	27	8.9999
MMM	chr2:74592177-74592468(-)$1	291	15	18	8.9999
ggg	chrX:153587609-153587862(-)$1	253	38	41	8.9999
[cc	chrX:153580654-153580899(-)$1	245	15	18	8.9999
ddd	chr1:156281748-156281998(-)$1	250	146	149	8.9999
:::	chrX:153583258-153583506(-)$1	248	21	24	8.9999
+++	chr7:94294956-94295168(+)$1	212	89	92	8.9999
EEE	chr12:103310747-103310976(-)$1	229	1	4	8.9999
ccq	chr19:811125-811430(+)$1	305	21	24	8.9999
[dd	chr5:137906615-137906890(-)$1	275	62	65	8.9999
FFF	chr17:18154647-18154890(-)$1	243	7	10	8.9999
c&&	chr19:51853537-51853746(-)$1	209	58	61	8.9999
ccc	chr17:40061675-40061926(-)$1	251	48	51	8.9999
HKK	chr17:26900076-26900340(-)$1	264	12	15	8.9999
fff	chr10:51581170-51581387(+)$1	217	27	30	8.9999
%dd	chr6:114181571-114181868(+)$1	297	192	195	8.9999
ddd	chr4:99997342-99997568(-)$1	226	59	62	8.9999
b[b	chr3:47894307-47894580(-)$1	273	166	169	8.9999
ee[	chr2:63821521-63821778(+)$1	257	133	136	8.9999
dd:	chr19:18547401-18547659(-)$1	258	24	27	8.9999
eee	chr5:179132609-179132867(+)$1	258	55	58	8.9999
:::	chr15:72499110-72499322(-)$1	212	35	38	8.9999
FF:	chr9:136528741-136529013(-)$1	272	5	8	8.9999
::G	chr12:22837724-22838065(+)$1	341	8	11	8.9999
cc]	chr19:47700398-47700639(+)$1	241	57	60	8.9999
ggg	chr18:43666910-43667160(-)$1	250	54	57	8.9999
d!!	chr15:72502609-72502876(-)$1	267	6	9	8.9999
eqq	chr17:72764188-72764474(+)$1	286	29	32	8.9999
[bb	chr11:18425198-18425419(+)$1	221	68	71	8.9999
mmm	chr10:13320155-13320439(-)$1	284	103	106	8.9999
ddd	chr11:18420879-18421092(+)$1	213	37	40	8.9999
AKK	chr5:138118846-138119126(+)$1	280	97	100	8.9999
CCC	chr19:54652058-54652371(+)$1	313	7	10	8.9999
PDD	chr6:135308689-135309027(-)$1	338	56	59	8.9999
CCC	chr19:8553509-8553780(+)$1	271	72	75	8.9999
iii	chr20:1434763-1435047(-)$1	284	113	116	8.9999

#DB
(((	chr1:156290544-156290795(-)$1	1	12	15	8.9999
...	chr3:184045273-184045523(+)$1	1	0	3	8.9999
(..	chr12:57897955-57898183(+)$1	1	135	138	8.9999
((.	chr7:94294563-94294795(+)$1	1	10	13	8.9999
((.	chr2:44116873-44117113(-)$1	1	28	31	8.9999
...	chr5:151176686-151176995(+)$1	1	2	5	8.9999
...	chr17:4577791-4578050(-)$1	1	6	9	8.9999
(..	chr14:23239301-23239539(+)$1	1	108	111	8.9999
(((	chr1:156294670-156294909(-)$1	1	12	15	8.9999
(((	chr5:179263348-179263649(+)$1	1	3	6	8.9999
(((	chr11:57076244-57076593(-)$1	1	4	7	8.9999
(((	chr2:27598688-27598932(+)$1	1	90	93	8.9999
.(.	chr8:22432805-22433078(+)$1	1	24	27	8.9999
(((	chr16:3724298-3724578(-)$1	1	0	3	8.9999
((.	chr3:49137775-49137991(-)$1	1	10	13	8.9999
(((	chr3:48636968-48637197(-)$1	1	85	88	8.9999
(((	chr16:56501038-56501305(+)$1	1	16	19	8.9999
.((	chr5:33462120-33462372(+)$1	1	8	11	8.9999
(((	chr1:45976860-45977091(-)$1	1	13	16	8.9999
(((	chr10:88854288-88854552(-)$1	1	16	19	8.9999
.))	chr17:7480920-7481124(+)$1	1	58	61	8.9999
(((	chr12:69993541-69993789(+)$1	1	71	74	8.9999
(.(	chr7:100276270-100276555(+)$1	1	55	58	8.9999
...	chr11:64979262-64979541(+)$1	1	11	14	8.9999
(((	chr5:150505862-150506079(-)$1	1	39	42	8.9999
...	chr14:94528744-94529043(-)$1	1	144	147	8.9999
(((	chr3:58415333-58415555(-)$1	1	74	77	8.9999
(((	chr14:24656881-24657101(-)$1	1	21	24	8.9999
((.	chr16:85834713-85834942(+)$1	1	20	23	8.9999
(((	chr12:121431866-121432147(+)$1	1	12	15	8.9999
(((	chr11:18428655-18428870(+)$1	1	160	163	8.9999
.(.	chr19:49510456-49510724(+)$1	1	13	16	8.9999
(((	chr17:18155685-18155917(-)$1	1	28	31	8.9999
(((	chr20:33867703-33867990(-)$1	1	26	29	8.9999
(((	chr17:4792877-4793139(+)$1	1	13	16	8.9999
...	chr3:184041467-184041730(+)$1	1	119	122	8.9999
...	chr11:57067074-57067319(-)$1	1	12	15	8.9999
(.(	chr11:62334176-62334403(-)$1	1	4	7	8.9999
.))	chr9:95042946-95043219(-)$1	1	110	113	8.9999
(((	chr3:58415355-58415618(-)$1	1	22	25	8.9999
(((	chr14:75602362-75602609(-)$1	1	37	40	8.9999
(((	chr14:24654329-24654618(-)$1	1	29	32	8.9999
(((	chr18:211206-211476(+)$1	1	15	18	8.9999
(((	chr18:12344041-12344348(-)$1	1	72	75	8.9999
)))	chr5:167927520-167927781(+)$1	1	140	143	8.9999
)))	chr17:75496288-75496528(+)$1	1	217	220	8.9999
(.(	chr2:171819248-171819530(+)$1	1	15	18	8.9999
)))	chr19:47112906-47113137(+)$1	1	156	159	8.9999
)).	chrX:153580251-153580484(-)$1	1	29	32	8.9999
.))	chr19:5667271-5667562(+)$1	1	200	203	8.9999
..(	chr19:48374599-48374863(-)$1	1	24	27	8.9999
(((	chr21:45746837-45747084(+)$1	1	14	17	8.9999
(..	chr18:29178612-29178869(+)$1	1	122	125	8.9999
...	chr3:184049017-184049252(+)$1	1	1	4	8.9999
(((	chr16:1749162-1749457(+)$1	1	15	18	8.9999
...	chr2:96950140-96950404(-)$1	1	116	119	8.9999
.((	chr2:98264437-98264675(+)$1	1	55	58	8.9999
(((	chr14:23395812-23396062(-)$1	1	166	169	8.9999
(((	chr19:8550385-8550713(+)$1	1	23	26	8.9999
((.	chr12:6978162-6978369(+)$1	1	63	66	8.9999
..(	chr12:6626844-6627091(+)$1	1	1	4	8.9999
(((	chr12:6861387-6861628(-)$1	1	22	25	8.9999
...	chr17:4442855-4443118(-)$1	1	73	76	8.9999
(..	chr5:150511934-150512230(-)$1	1	24	27	8.9999
...	chr2:74592177-74592468(-)$1	1	15	18	8.9999
(((	chrX:153587609-153587862(-)$1	1	38	41	8.9999
.((	chrX:153580654-153580899(-)$1	1	15	18	8.9999
(((	chr1:156281748-156281998(-)$1	1	146	149	8.9999
...	chrX:153583258-153583506(-)$1	1	21	24	8.9999
...	chr7:94294956-94295168(+)$1	1	89	92	8.9999
(((	chr12:103310747-103310976(-)$1	1	1	4	8.9999
((.	chr19:811125-811430(+)$1	1	21	24	8.9999
.((	chr5:137906615-137906890(-)$1	1	62	65	8.9999
(((	chr17:18154647-18154890(-)$1	1	7	10	8.9999
(..	chr19:51853537-51853746(-)$1	1	58	61	8.9999
(((	chr17:40061675-40061926(-)$1	1	48	51	8.9999
(..	chr17:26900076-26900340(-)$1	1	12	15	8.9999
(((	chr10:51581170-51581387(+)$1	1	27	30	8.9999
.((	chr6:114181571-114181868(+)$1	1	192	195	8.9999
)))	chr4:99997342-99997568(-)$1	1	59	62	8.9999
(.(	chr3:47894307-47894580(-)$1	1	166	169	8.9999
((.	chr2:63821521-63821778(+)$1	1	133	136	8.9999
)).	chr19:18547401-18547659(-)$1	1	24	27	8.9999
)))	chr5:179132609-179132867(+)$1	1	55	58	8.9999
...	chr15:72499110-72499322(-)$1	1	35	38	8.9999
((.	chr9:136528741-136529013(-)$1	1	5	8	8.9999
..(	chr12:22837724-22838065(+)$1	1	8	11	8.9999
)).	chr19:47700398-47700639(+)$1	1	57	60	8.9999
(((	chr18:43666910-43667160(-)$1	1	54	57	8.9999
(..	chr15:72502609-72502876(-)$1	1	6	9	8.9999
(..	chr17:72764188-72764474(+)$1	1	29	32	8.9999
.((	chr11:18425198-18425419(+)$1	1	68	71	8.9999
...	chr10:13320155-13320439(-)$1	1	103	106	8.9999
(((	chr11:18420879-18421092(+)$1	1	37	40	8.9999
(..	chr5:138118846-138119126(+)$1	1	97	100	8.9999
(((	chr19:54652058-54652371(+)$1	1	7	10	8.9999
.((	chr6:135308689-135309027(-)$1	1	56	59	8.9999
(((	chr19:8553509-8553780(+)$1	1	72	75	8.9999
)))	chr20:1434763-1435047(-)$1	1	113	116	8.9999

#PSSM
G : 0.96	g : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_CDS_m2_run1.nuc.txt

#NT
AGG	chr20:34302145-34302376(-)$1	231	90	93	8.9999
AGG	chr20:32247183-32247462(-)$1	279	2	5	8.9999
Agg	chr9:100818961-100819252(+)$1	291	66	69	8.9999
AGG	chr4:83347155-83347383(-)$1	228	99	102	8.9999
AGG	chr12:72056719-72057048(-)$1	329	98	101	8.9999
AGG	chr22:46685232-46685551(+)$1	319	34	37	8.9999
AGG	chr9:131456123-131456396(+)$1	273	49	52	8.9999
agg	chr20:57266422-57266709(+)$1	287	53	56	8.9999
AGG	chr17:43227421-43227682(+)$1	261	1	4	8.9999
agg	chr20:3765553-3765860(-)$1	307	3	6	8.9999
AGG	chr12:133360601-133360911(-)$1	310	16	19	8.9999
AGG	chr6:30632856-30633124(-)$1	268	12	15	8.9999
AGG	chr14:23528234-23528478(-)$1	244	11	14	8.9999
AGG	chr8:144644104-144644394(+)$1	290	39	42	8.9999
AGG	chr2:220099491-220099734(+)$1	243	42	45	8.9999
AGG	chr6:167412764-167413112(+)$1	348	2	5	8.9999
AGG	chr3:184098397-184098683(+)$1	286	80	83	8.9999
AGG	chr17:74289818-74290118(-)$1	300	14	17	8.9999
AGG	chr20:31024573-31024838(+)$1	265	77	80	8.9999
AGG	chr9:116997809-116998032(+)$1	223	12	15	8.9999
AGG	chr6:168343981-168344236(+)$1	255	98	101	8.9999
AGG	chr14:39736600-39736808(+)$1	208	20	23	8.9999
AGG	chr16:89971382-89971607(+)$1	225	6	9	8.9999
AGG	chr16:30002116-30002395(+)$1	279	7	10	8.9999
AGG	chr2:74701651-74701925(-)$1	274	5	8	8.9999
AGG	chr8:145979019-145979284(-)$1	265	7	10	8.9999
AGG	chrX:18942408-18942679(-)$1	271	0	3	8.9999
AGG	chr6:31936968-31937257(+)$1	289	1	4	8.9999
AGG	chr1:2160159-2160488(+)$1	329	50	53	8.9999
AGG	chr2:71357672-71357977(+)$1	305	133	136	8.9999
AGG	chr17:34856573-34856893(-)$1	320	4	7	8.9999
AGG	chr20:62311915-62312171(+)$1	256	33	36	8.9999
AGG	chr11:85374902-85375178(-)$1	276	31	34	8.9999
AGG	chr6:138745222-138745583(-)$1	361	30	33	8.9999
AGG	chr9:117052460-117052710(+)$1	250	41	44	8.9999
AGG	chr16:24802721-24802990(+)$1	269	0	3	8.9999
AGG	chr17:46052789-46053038(+)$1	249	88	91	8.9999
AGG	chr12:103260328-103260542(-)$1	214	44	47	8.9999
AGG	chr8:144671646-144671934(-)$1	288	41	44	8.9999
AGG	chr2:128180520-128180764(+)$1	244	206	209	8.9999
AGG	chr3:56716851-56717134(-)$1	283	89	92	8.9999
AGG	chr8:94745951-94746210(-)$1	259	5	8	8.9999
AGG	chr9:117012811-117013029(+)$1	218	11	14	8.9999
AGG	chr21:46915171-46915373(+)$1	202	29	32	8.9999
AGG	chr12:50898885-50899166(+)$1	281	49	52	8.9999
AGG	chr21:47569911-47570164(-)$1	253	52	55	8.9999
AGG	chr6:154831054-154831316(-)$1	262	11	14	8.9999
AGG	chr11:116661379-116661660(-)$1	281	5	8	8.9999
AGG	chr8:94746584-94746916(-)$1	332	7	10	8.9999
AGG	chr2:236579054-236579332(+)$1	278	68	71	8.9999
AGG	chr19:1360067-1360399(+)$1	332	79	82	8.9999
AGG	chr16:22337033-22337349(+)$1	316	46	49	8.9999
agg	chr17:4575256-4575564(-)$1	308	10	13	8.9999
AGG	chr20:34302118-34302345(-)$1	227	59	62	8.9999
AGG	chr18:55997915-55998230(+)$1	315	73	76	8.9999
AGG	chr5:132096453-132096755(-)$1	302	17	20	8.9999
AGG	chr2:74708850-74709109(-)$1	259	23	26	8.9999
AGG	chr20:60909215-60909496(-)$1	281	9	12	8.9999
agg	chr11:129991565-129991802(+)$1	237	73	76	8.9999
AGG	chr13:113980166-113980480(-)$1	314	9	12	8.9999
agg	chr6:31857144-31857449(-)$1	305	107	110	8.9999
AGG	chr2:232576515-232576781(+)$1	266	7	10	8.9999
AGG	chr2:85769679-85769899(+)$1	220	6	9	8.9999
agg	chr17:34171851-34172128(+)$1	277	8	11	8.9999
AGG	chr7:65551630-65551907(+)$1	277	17	20	8.9999
AGG	chr12:124093136-124093464(+)$1	328	114	117	8.9999
AGG	chr1:53377136-53377420(-)$1	284	24	27	8.9999
AGG	chr14:24900772-24901109(+)$1	337	34	37	8.9999
AGG	chr20:25457487-25457754(-)$1	267	27	30	8.9999
AGG	chr8:94746411-94746696(-)$1	285	0	3	8.9999
agg	chr9:100777544-100777790(+)$1	246	101	104	8.9999
AGG	chr7:26233095-26233349(-)$1	254	17	20	8.9999
AGG	chr11:71942046-71942361(+)$1	315	35	38	8.9999
AGG	chr7:97498159-97498438(-)$1	279	50	53	8.9999
AGG	chr1:203767097-203767374(+)$1	277	30	33	8.9999
AGG	chr20:52198008-52198239(-)$1	231	56	59	8.9999
AGG	chr6:43014573-43014820(-)$1	247	23	26	8.9999
AGG	chr9:100773458-100773728(+)$1	270	58	61	8.9999
AGG	chr7:72861490-72861755(-)$1	265	44	47	8.9999
agg	chr9:131456197-131456421(+)$1	224	0	3	8.9999
AGG	chr2:216946213-216946469(-)$1	256	1	4	8.9999
AGG	chr17:74287006-74287269(-)$1	263	93	96	8.9999
AGG	chr6:138753465-138753718(-)$1	253	17	20	8.9999
AGG	chr17:55184375-55184642(+)$1	267	31	34	8.9999
AGG	chr20:25457554-25457809(-)$1	255	34	37	8.9999
AGG	chr3:9854573-9854897(+)$1	324	76	79	8.9999
AGG	chr6:117923173-117923507(-)$1	334	18	21	8.9999
AGG	chr17:80151737-80152036(-)$1	299	19	22	8.9999
AGG	chr14:23528460-23528707(-)$1	247	37	40	8.9999
AGG	chr22:45724200-45724427(+)$1	227	10	13	8.9999
AGG	chr9:117031420-117031672(+)$1	252	32	35	8.9999
AGG	chr2:70056989-70057298(+)$1	309	90	93	8.9999
AGG	chr3:48670808-48671020(-)$1	212	4	7	8.9999
AGG	chr20:62365976-62366229(+)$1	253	137	140	8.9999
AGG	chr14:24034691-24034939(-)$1	248	27	30	8.9999
AGG	chr20:34302176-34302408(-)$1	232	122	125	8.9999
AGG	chr2:85769699-85769930(+)$1	231	53	56	8.9999
AGG	chr7:150776678-150776973(-)$1	295	103	106	8.9999

#otherMatches

#Struct PSSM
GGG	chr22:45723787-45724045(+)$1	258	52	55	8.9999
nnn	chr20:34302145-34302376(-)$1	231	90	93	8.9999
DDh	chr20:32247183-32247462(-)$1	279	2	5	8.9999
"""	chr9:100818961-100819252(+)$1	291	66	69	8.9999
::d	chr4:83347155-83347383(-)$1	228	99	102	8.9999
eee	chr12:72056719-72057048(-)$1	329	98	101	8.9999
ffb	chr22:46685232-46685551(+)$1	319	34	37	8.9999
###	chr9:131456123-131456396(+)$1	273	49	52	8.9999
ddd	chr20:57266422-57266709(+)$1	287	53	56	8.9999
ccc	chr17:43227421-43227682(+)$1	261	1	4	8.9999
:::	chr20:3765553-3765860(-)$1	307	3	6	8.9999
mmm	chr12:133360601-133360911(-)$1	310	16	19	8.9999
hhh	chr6:30632856-30633124(-)$1	268	12	15	8.9999
HHH	chr14:23528234-23528478(-)$1	244	11	14	8.9999
e]e	chr8:144644104-144644394(+)$1	290	39	42	8.9999
oa5	chr2:220099491-220099734(+)$1	243	42	45	8.9999
FFF	chr6:167412764-167413112(+)$1	348	2	5	8.9999
ddd	chr3:184098397-184098683(+)$1	286	80	83	8.9999
DDD	chr17:74289818-74290118(-)$1	300	14	17	8.9999
:cc	chr20:31024573-31024838(+)$1	265	77	80	8.9999
cmm	chr9:116997809-116998032(+)$1	223	12	15	8.9999
ooo	chr6:168343981-168344236(+)$1	255	98	101	8.9999
MDD	chr14:39736600-39736808(+)$1	208	20	23	8.9999
ggg	chr16:89971382-89971607(+)$1	225	6	9	8.9999
DDD	chr16:30002116-30002395(+)$1	279	7	10	8.9999
FFF	chr2:74701651-74701925(-)$1	274	5	8	8.9999
e[a	chr8:145979019-145979284(-)$1	265	7	10	8.9999
:cc	chrX:18942408-18942679(-)$1	271	0	3	8.9999
:::	chr6:31936968-31937257(+)$1	289	1	4	8.9999
{II	chr1:2160159-2160488(+)$1	329	50	53	8.9999
[ff	chr2:71357672-71357977(+)$1	305	133	136	8.9999
hhh	chr17:34856573-34856893(-)$1	320	4	7	8.9999
"dd	chr20:62311915-62312171(+)$1	256	33	36	8.9999
oob	chr11:85374902-85375178(-)$1	276	31	34	8.9999
:cc	chr6:138745222-138745583(-)$1	361	30	33	8.9999
c[a	chr9:117052460-117052710(+)$1	250	41	44	8.9999
::c	chr16:24802721-24802990(+)$1	269	0	3	8.9999
ddd	chr17:46052789-46053038(+)$1	249	88	91	8.9999
ddd	chr12:103260328-103260542(-)$1	214	44	47	8.9999
FFF	chr8:144671646-144671934(-)$1	288	41	44	8.9999
nng	chr2:128180520-128180764(+)$1	244	206	209	8.9999
"cc	chr3:56716851-56717134(-)$1	283	89	92	8.9999
:ee	chr8:94745951-94746210(-)$1	259	5	8	8.9999
ppp	chr9:117012811-117013029(+)$1	218	11	14	8.9999
eee	chr21:46915171-46915373(+)$1	202	29	32	8.9999
{FF	chr12:50898885-50899166(+)$1	281	49	52	8.9999
KFF	chr21:47569911-47570164(-)$1	253	52	55	8.9999
LA{	chr6:154831054-154831316(-)$1	262	11	14	8.9999
###	chr11:116661379-116661660(-)$1	281	5	8	8.9999
DDK	chr8:94746584-94746916(-)$1	332	7	10	8.9999
777	chr2:236579054-236579332(+)$1	278	68	71	8.9999
fff	chr19:1360067-1360399(+)$1	332	79	82	8.9999
:FF	chr16:22337033-22337349(+)$1	316	46	49	8.9999
nnn	chr17:4575256-4575564(-)$1	308	10	13	8.9999
nnn	chr20:34302118-34302345(-)$1	227	59	62	8.9999
===	chr18:55997915-55998230(+)$1	315	73	76	8.9999
:cc	chr5:132096453-132096755(-)$1	302	17	20	8.9999
::e	chr2:74708850-74709109(-)$1	259	23	26	8.9999
ddd	chr20:60909215-60909496(-)$1	281	9	12	8.9999
ddd	chr11:129991565-129991802(+)$1	237	73	76	8.9999
[ff	chr13:113980166-113980480(-)$1	314	9	12	8.9999
3dd	chr6:31857144-31857449(-)$1	305	107	110	8.9999
nnd	chr2:232576515-232576781(+)$1	266	7	10	8.9999
d[f	chr2:85769679-85769899(+)$1	220	6	9	8.9999
GGG	chr17:34171851-34172128(+)$1	277	8	11	8.9999
:bb	chr7:65551630-65551907(+)$1	277	17	20	8.9999
EEC	chr12:124093136-124093464(+)$1	328	114	117	8.9999
GG:	chr1:53377136-53377420(-)$1	284	24	27	8.9999
MMM	chr14:24900772-24901109(+)$1	337	34	37	8.9999
OOO	chr20:25457487-25457754(-)$1	267	27	30	8.9999
::c	chr8:94746411-94746696(-)$1	285	0	3	8.9999
ggg	chr9:100777544-100777790(+)$1	246	101	104	8.9999
:CC	chr7:26233095-26233349(-)$1	254	17	20	8.9999
ggg	chr11:71942046-71942361(+)$1	315	35	38	8.9999
FF{	chr7:97498159-97498438(-)$1	279	50	53	8.9999
ggg	chr1:203767097-203767374(+)$1	277	30	33	8.9999
::e	chr20:52198008-52198239(-)$1	231	56	59	8.9999
b[b	chr6:43014573-43014820(-)$1	247	23	26	8.9999
&&&	chr9:100773458-100773728(+)$1	270	58	61	8.9999
eee	chr7:72861490-72861755(-)$1	265	44	47	8.9999
:::	chr9:131456197-131456421(+)$1	224	0	3	8.9999
ddd	chr2:216946213-216946469(-)$1	256	1	4	8.9999
KDD	chr17:74287006-74287269(-)$1	263	93	96	8.9999
qee	chr6:138753465-138753718(-)$1	253	17	20	8.9999
EEE	chr17:55184375-55184642(+)$1	267	31	34	8.9999
[cc	chr20:25457554-25457809(-)$1	255	34	37	8.9999
00e	chr3:9854573-9854897(+)$1	324	76	79	8.9999
GGG	chr6:117923173-117923507(-)$1	334	18	21	8.9999
:::	chr17:80151737-80152036(-)$1	299	19	22	8.9999
ttt	chr14:23528460-23528707(-)$1	247	37	40	8.9999
DDD	chr22:45724200-45724427(+)$1	227	10	13	8.9999
cc3	chr9:117031420-117031672(+)$1	252	32	35	8.9999
mmm	chr2:70056989-70057298(+)$1	309	90	93	8.9999
[cc	chr3:48670808-48671020(-)$1	212	4	7	8.9999
ddd	chr20:62365976-62366229(+)$1	253	137	140	8.9999
FFF	chr14:24034691-24034939(-)$1	248	27	30	8.9999
ddd	chr20:34302176-34302408(-)$1	232	122	125	8.9999
ooc	chr2:85769699-85769930(+)$1	231	53	56	8.9999
KKJ	chr7:150776678-150776973(-)$1	295	103	106	8.9999

#DB
(((	chr22:45723787-45724045(+)$1	1	52	55	8.9999
...	chr20:34302145-34302376(-)$1	1	90	93	8.9999
(((	chr20:32247183-32247462(-)$1	1	2	5	8.9999
...	chr9:100818961-100819252(+)$1	1	66	69	8.9999
..(	chr4:83347155-83347383(-)$1	1	99	102	8.9999
)))	chr12:72056719-72057048(-)$1	1	98	101	8.9999
)))	chr22:46685232-46685551(+)$1	1	34	37	8.9999
...	chr9:131456123-131456396(+)$1	1	49	52	8.9999
)))	chr20:57266422-57266709(+)$1	1	53	56	8.9999
(((	chr17:43227421-43227682(+)$1	1	1	4	8.9999
...	chr20:3765553-3765860(-)$1	1	3	6	8.9999
...	chr12:133360601-133360911(-)$1	1	16	19	8.9999
(((	chr6:30632856-30633124(-)$1	1	12	15	8.9999
(((	chr14:23528234-23528478(-)$1	1	11	14	8.9999
).)	chr8:144644104-144644394(+)$1	1	39	42	8.9999
.).	chr2:220099491-220099734(+)$1	1	42	45	8.9999
(((	chr6:167412764-167413112(+)$1	1	2	5	8.9999
(((	chr3:184098397-184098683(+)$1	1	80	83	8.9999
(((	chr17:74289818-74290118(-)$1	1	14	17	8.9999
.((	chr20:31024573-31024838(+)$1	1	77	80	8.9999
(..	chr9:116997809-116998032(+)$1	1	12	15	8.9999
...	chr6:168343981-168344236(+)$1	1	98	101	8.9999
.((	chr14:39736600-39736808(+)$1	1	20	23	8.9999
(((	chr16:89971382-89971607(+)$1	1	6	9	8.9999
(((	chr16:30002116-30002395(+)$1	1	7	10	8.9999
(((	chr2:74701651-74701925(-)$1	1	5	8	8.9999
(.(	chr8:145979019-145979284(-)$1	1	7	10	8.9999
.((	chrX:18942408-18942679(-)$1	1	0	3	8.9999
...	chr6:31936968-31937257(+)$1	1	1	4	8.9999
.((	chr1:2160159-2160488(+)$1	1	50	53	8.9999
.((	chr2:71357672-71357977(+)$1	1	133	136	8.9999
(((	chr17:34856573-34856893(-)$1	1	4	7	8.9999
.((	chr20:62311915-62312171(+)$1	1	33	36	8.9999
..)	chr11:85374902-85375178(-)$1	1	31	34	8.9999
.((	chr6:138745222-138745583(-)$1	1	30	33	8.9999
(.(	chr9:117052460-117052710(+)$1	1	41	44	8.9999
..(	chr16:24802721-24802990(+)$1	1	0	3	8.9999
)))	chr17:46052789-46053038(+)$1	1	88	91	8.9999
(((	chr12:103260328-103260542(-)$1	1	44	47	8.9999
(((	chr8:144671646-144671934(-)$1	1	41	44	8.9999
..)	chr2:128180520-128180764(+)$1	1	206	209	8.9999
.((	chr3:56716851-56717134(-)$1	1	89	92	8.9999
.((	chr8:94745951-94746210(-)$1	1	5	8	8.9999
...	chr9:117012811-117013029(+)$1	1	11	14	8.9999
)))	chr21:46915171-46915373(+)$1	1	29	32	8.9999
.((	chr12:50898885-50899166(+)$1	1	49	52	8.9999
.((	chr21:47569911-47570164(-)$1	1	52	55	8.9999
.(.	chr6:154831054-154831316(-)$1	1	11	14	8.9999
...	chr11:116661379-116661660(-)$1	1	5	8	8.9999
((.	chr8:94746584-94746916(-)$1	1	7	10	8.9999
...	chr2:236579054-236579332(+)$1	1	68	71	8.9999
)))	chr19:1360067-1360399(+)$1	1	79	82	8.9999
.((	chr16:22337033-22337349(+)$1	1	46	49	8.9999
...	chr17:4575256-4575564(-)$1	1	10	13	8.9999
...	chr20:34302118-34302345(-)$1	1	59	62	8.9999
)))	chr18:55997915-55998230(+)$1	1	73	76	8.9999
.((	chr5:132096453-132096755(-)$1	1	17	20	8.9999
..(	chr2:74708850-74709109(-)$1	1	23	26	8.9999
(((	chr20:60909215-60909496(-)$1	1	9	12	8.9999
)))	chr11:129991565-129991802(+)$1	1	73	76	8.9999
.((	chr13:113980166-113980480(-)$1	1	9	12	8.9999
.))	chr6:31857144-31857449(-)$1	1	107	110	8.9999
..)	chr2:232576515-232576781(+)$1	1	7	10	8.9999
(.(	chr2:85769679-85769899(+)$1	1	6	9	8.9999
(((	chr17:34171851-34172128(+)$1	1	8	11	8.9999
.((	chr7:65551630-65551907(+)$1	1	17	20	8.9999
(((	chr12:124093136-124093464(+)$1	1	114	117	8.9999
((.	chr1:53377136-53377420(-)$1	1	24	27	8.9999
...	chr14:24900772-24901109(+)$1	1	34	37	8.9999
...	chr20:25457487-25457754(-)$1	1	27	30	8.9999
..(	chr8:94746411-94746696(-)$1	1	0	3	8.9999
)))	chr9:100777544-100777790(+)$1	1	101	104	8.9999
.((	chr7:26233095-26233349(-)$1	1	17	20	8.9999
(((	chr11:71942046-71942361(+)$1	1	35	38	8.9999
((.	chr7:97498159-97498438(-)$1	1	50	53	8.9999
)))	chr1:203767097-203767374(+)$1	1	30	33	8.9999
..(	chr20:52198008-52198239(-)$1	1	56	59	8.9999
(.(	chr6:43014573-43014820(-)$1	1	23	26	8.9999
...	chr9:100773458-100773728(+)$1	1	58	61	8.9999
(((	chr7:72861490-72861755(-)$1	1	44	47	8.9999
...	chr9:131456197-131456421(+)$1	1	0	3	8.9999
(((	chr2:216946213-216946469(-)$1	1	1	4	8.9999
.((	chr17:74287006-74287269(-)$1	1	93	96	8.9999
.))	chr6:138753465-138753718(-)$1	1	17	20	8.9999
(((	chr17:55184375-55184642(+)$1	1	31	34	8.9999
.((	chr20:25457554-25457809(-)$1	1	34	37	8.9999
..)	chr3:9854573-9854897(+)$1	1	76	79	8.9999
(((	chr6:117923173-117923507(-)$1	1	18	21	8.9999
...	chr17:80151737-80152036(-)$1	1	19	22	8.9999
...	chr14:23528460-23528707(-)$1	1	37	40	8.9999
(((	chr22:45724200-45724427(+)$1	1	10	13	8.9999
)).	chr9:117031420-117031672(+)$1	1	32	35	8.9999
...	chr2:70056989-70057298(+)$1	1	90	93	8.9999
.((	chr3:48670808-48671020(-)$1	1	4	7	8.9999
)))	chr20:62365976-62366229(+)$1	1	137	140	8.9999
(((	chr14:24034691-24034939(-)$1	1	27	30	8.9999
)))	chr20:34302176-34302408(-)$1	1	122	125	8.9999
..)	chr2:85769699-85769930(+)$1	1	53	56	8.9999
..(	chr7:150776678-150776973(-)$1	1	103	106	8.9999

#PSSM
A : 0.91	a : 0.08	
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	

#score	890.9999999999998
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_UTR_m3_run1.nuc.txt

#NT
UUA	chrX:23802349-23802591(+)$1	242	21	24	9.0000
uuA	chr21:44513222-44513474(-)$1	252	4	7	9.0000
UUA	chr19:54972491-54972729(+)$1	238	139	142	9.0000
UUA	chr4:159093913-159094186(-)$1	273	28	31	9.0000
UUA	chr4:107169314-107169573(-)$1	259	11	14	9.0000
UUA	chr20:62559581-62559860(+)$1	279	25	28	9.0000
UUA	chr17:57915547-57915775(+)$1	228	41	44	9.0000
UUA	chr20:61299463-61299735(+)$1	272	30	33	9.0000
UUA	chr19:9529705-9529957(-)$1	252	58	61	9.0000
UUA	chr2:70454801-70455083(-)$1	282	8	11	9.0000
UUA	chr7:72419481-72419742(-)$1	261	97	100	9.0000
UUA	chr3:9516639-9516888(+)$1	249	37	40	9.0000
UUA	chr9:32985881-32986135(-)$1	254	18	21	9.0000
UUA	chr16:56536214-56536480(-)$1	266	30	33	9.0000
UUA	chr3:8675522-8675794(-)$1	272	200	203	9.0000
UUA	chr13:20245258-20245530(+)$1	272	1	4	9.0000
uua	chr19:52597087-52597367(-)$1	280	235	238	9.0000
UUA	chr6:41751748-41752008(+)$1	260	12	15	9.0000
UUA	chr3:140682292-140682596(+)$1	304	28	31	9.0000
UUA	chr11:57558726-57558998(+)$1	272	63	66	9.0000
UUA	chr1:1326767-1327048(-)$1	281	20	23	9.0000
UUA	chr3:9475866-9476144(+)$1	278	36	39	9.0000
UUA	chr3:48670932-48671186(-)$1	254	10	13	9.0000
uua	chr18:12986731-12987033(+)$1	302	46	49	9.0000
UUA	chr2:74750004-74750265(-)$1	261	156	159	9.0000
UUA	chr5:38886195-38886522(+)$1	327	47	50	9.0000
UUA	chr10:5042487-5042741(-)$1	254	22	25	9.0000
UUA	chr17:27000282-27000538(+)$1	256	44	47	9.0000
UUA	chr7:26229936-26230193(-)$1	257	53	56	9.0000
UUA	chr16:28969891-28970180(+)$1	289	45	48	9.0000
UUA	chr8:22269333-22269559(+)$1	226	79	82	9.0000
UUA	chr1:151196607-151196861(+)$1	254	9	12	9.0000
uua	chr6:33231183-33231444(-)$1	261	0	3	9.0000
UUA	chr1:6273029-6273258(+)$1	229	14	17	9.0000
UUA	chr5:64859503-64859762(+)$1	259	0	3	9.0000
UUA	chr7:97501123-97501416(-)$1	293	71	74	9.0000
UUA	chr12:7252221-7252475(-)$1	254	61	64	9.0000
uua	chr17:30700310-30700570(+)$1	260	25	28	9.0000
UUA	chr2:209169464-209169754(+)$1	290	6	9	9.0000
UUA	chr7:26230684-26230888(-)$1	204	24	27	9.0000
UUA	chr6:160209768-160210010(-)$1	242	82	85	9.0000
UUA	chr17:7571951-7572249(-)$1	298	50	53	9.0000
UUA	chr11:64540876-64541090(-)$1	214	52	55	9.0000
UUA	chr3:132297752-132298014(-)$1	262	18	21	9.0000
UUA	chr4:728367-728632(+)$1	265	8	11	9.0000
UUA	chr14:23794344-23794594(+)$1	250	81	84	9.0000
UUA	chr6:43151923-43152194(+)$1	271	91	94	9.0000
UUA	chr17:38189567-38189828(-)$1	261	224	227	9.0000
UUA	chrX:23802292-23802521(+)$1	229	78	81	9.0000
UUA	chr16:30711824-30712127(+)$1	303	20	23	9.0000
UUA	chr2:207014487-207014754(-)$1	267	60	63	9.0000
UUA	chr19:54971408-54971643(+)$1	235	55	58	9.0000
uua	chr21:34931185-34931435(+)$1	250	6	9	9.0000
UUA	chrX:102940013-102940314(-)$1	301	5	8	9.0000
UUA	chr6:99848033-99848295(-)$1	262	4	7	9.0000
UUA	chr11:61109711-61109962(+)$1	251	15	18	9.0000
UUA	chr11:3765719-3766002(-)$1	283	41	44	9.0000
UUA	chr11:95560839-95561094(+)$1	255	11	14	9.0000
UUA	chr11:64535639-64535881(-)$1	242	74	77	9.0000
uua	chr20:30959857-30960108(+)$1	251	13	16	9.0000
UUA	chr17:73956303-73956555(-)$1	252	30	33	9.0000
UUA	chrX:48434091-48434353(+)$1	262	214	217	9.0000
UUA	chr17:46052785-46053030(+)$1	245	27	30	9.0000
UUA	chr3:156869508-156869773(-)$1	265	2	5	9.0000
UUA	chr11:93463741-93463987(-)$1	246	14	17	9.0000
UUA	chr16:277929-278197(-)$1	268	61	64	9.0000
UUA	chr14:24616307-24616538(-)$1	231	73	76	9.0000
UUA	chr4:83275984-83276252(-)$1	268	31	34	9.0000
UUA	chr4:184192116-184192372(+)$1	256	2	5	9.0000
UUA	chr14:20920149-20920425(-)$1	276	9	12	9.0000
UUA	chr13:98017232-98017514(+)$1	282	38	41	9.0000
UUA	chr7:155573222-155573499(+)$1	277	51	54	9.0000
UUA	chr2:190648154-190648406(-)$1	252	18	21	9.0000
UUA	chr2:162017184-162017461(+)$1	277	229	232	9.0000
UUA	chr3:186505481-186505727(+)$1	246	22	25	9.0000
UUA	chr11:111175540-111175792(+)$1	252	8	11	9.0000
UUA	chr21:46193454-46193683(-)$1	229	1	4	9.0000
UUA	chr16:4927276-4927545(+)$1	269	17	20	9.0000
UUA	chr2:198284817-198285037(-)$1	220	3	6	9.0000
UUA	chr8:30567271-30567526(-)$1	255	7	10	9.0000
UUA	chr19:19101973-19102320(-)$1	347	247	250	9.0000
UUA	chr20:43563936-43564193(+)$1	257	227	230	9.0000
UUA	chr21:18940361-18940597(+)$1	236	4	7	9.0000
UUA	chr4:83276126-83276372(-)$1	246	25	28	9.0000
UUA	chr11:85371494-85371755(-)$1	261	2	5	9.0000
UUA	chr20:43559245-43559494(+)$1	249	239	242	9.0000
UUA	chr2:70456072-70456333(-)$1	261	41	44	9.0000
UUA	chr20:33891707-33892010(-)$1	303	251	254	9.0000
uua	chr10:5022982-5023228(+)$1	246	50	53	9.0000
UUA	chr11:85374183-85374426(-)$1	243	38	41	9.0000
UUA	chr6:24720248-24720514(-)$1	266	245	248	9.0000

#otherMatches

#Struct PSSM
c!!	chr10:5947883-5948160(+)$1	277	15	18	9.0000
HH:	chrX:23802349-23802591(+)$1	242	21	24	9.0000
EKK	chr21:44513222-44513474(-)$1	252	4	7	9.0000
""b	chr19:54972491-54972729(+)$1	238	139	142	9.0000
ddd	chr4:159093913-159094186(-)$1	273	28	31	9.0000
:::	chr4:107169314-107169573(-)$1	259	11	14	9.0000
Eff	chr20:62559581-62559860(+)$1	279	25	28	9.0000
DDD	chr17:57915547-57915775(+)$1	228	41	44	9.0000
ddd	chr20:61299463-61299735(+)$1	272	30	33	9.0000
GGG	chr19:9529705-9529957(-)$1	252	58	61	9.0000
JJJ	chr2:70454801-70455083(-)$1	282	8	11	9.0000
4ee	chr7:72419481-72419742(-)$1	261	97	100	9.0000
[bb	chr3:9516639-9516888(+)$1	249	37	40	9.0000
mmm	chr9:32985881-32986135(-)$1	254	18	21	9.0000
fff	chr16:56536214-56536480(-)$1	266	30	33	9.0000
:::	chr3:8675522-8675794(-)$1	272	200	203	9.0000
:::	chr13:20245258-20245530(+)$1	272	1	4	9.0000
:cc	chr19:52597087-52597367(-)$1	280	235	238	9.0000
cmm	chr6:41751748-41752008(+)$1	260	12	15	9.0000
fff	chr3:140682292-140682596(+)$1	304	28	31	9.0000
'''	chr11:57558726-57558998(+)$1	272	63	66	9.0000
ddd	chr1:1326767-1327048(-)$1	281	20	23	9.0000
:::	chr3:9475866-9476144(+)$1	278	36	39	9.0000
)))	chr3:48670932-48671186(-)$1	254	10	13	9.0000
nnn	chr18:12986731-12987033(+)$1	302	46	49	9.0000
epp	chr2:74750004-74750265(-)$1	261	156	159	9.0000
:::	chr5:38886195-38886522(+)$1	327	47	50	9.0000
ttt	chr10:5042487-5042741(-)$1	254	22	25	9.0000
dmm	chr17:27000282-27000538(+)$1	256	44	47	9.0000
eee	chr7:26229936-26230193(-)$1	257	53	56	9.0000
fff	chr16:28969891-28970180(+)$1	289	45	48	9.0000
bqq	chr8:22269333-22269559(+)$1	226	79	82	9.0000
mmm	chr1:151196607-151196861(+)$1	254	9	12	9.0000
:::	chr6:33231183-33231444(-)$1	261	0	3	9.0000
:::	chr1:6273029-6273258(+)$1	229	14	17	9.0000
:::	chr5:64859503-64859762(+)$1	259	0	3	9.0000
===	chr7:97501123-97501416(-)$1	293	71	74	9.0000
ccm	chr12:7252221-7252475(-)$1	254	61	64	9.0000
==o	chr17:30700310-30700570(+)$1	260	25	28	9.0000
:::	chr2:209169464-209169754(+)$1	290	6	9	9.0000
:::	chr7:26230684-26230888(-)$1	204	24	27	9.0000
ooo	chr6:160209768-160210010(-)$1	242	82	85	9.0000
:::	chr17:7571951-7572249(-)$1	298	50	53	9.0000
fpp	chr11:64540876-64541090(-)$1	214	52	55	9.0000
KKC	chr3:132297752-132298014(-)$1	262	18	21	9.0000
##f	chr4:728367-728632(+)$1	265	8	11	9.0000
ddd	chr14:23794344-23794594(+)$1	250	81	84	9.0000
ggg	chr6:43151923-43152194(+)$1	271	91	94	9.0000
"""	chr17:38189567-38189828(-)$1	261	224	227	9.0000
ddd	chrX:23802292-23802521(+)$1	229	78	81	9.0000
'''	chr16:30711824-30712127(+)$1	303	20	23	9.0000
mmm	chr2:207014487-207014754(-)$1	267	60	63	9.0000
MMC	chr19:54971408-54971643(+)$1	235	55	58	9.0000
:::	chr21:34931185-34931435(+)$1	250	6	9	9.0000
:::	chrX:102940013-102940314(-)$1	301	5	8	9.0000
cqq	chr6:99848033-99848295(-)$1	262	4	7	9.0000
ggg	chr11:61109711-61109962(+)$1	251	15	18	9.0000
:::	chr11:3765719-3766002(-)$1	283	41	44	9.0000
:EE	chr11:95560839-95561094(+)$1	255	11	14	9.0000
sss	chr11:64535639-64535881(-)$1	242	74	77	9.0000
KEE	chr20:30959857-30960108(+)$1	251	13	16	9.0000
uuu	chr17:73956303-73956555(-)$1	252	30	33	9.0000
22d	chrX:48434091-48434353(+)$1	262	214	217	9.0000
OOO	chr17:46052785-46053030(+)$1	245	27	30	9.0000
::E	chr3:156869508-156869773(-)$1	265	2	5	9.0000
eeo	chr11:93463741-93463987(-)$1	246	14	17	9.0000
hhh	chr16:277929-278197(-)$1	268	61	64	9.0000
FF{	chr14:24616307-24616538(-)$1	231	73	76	9.0000
=[d	chr4:83275984-83276252(-)$1	268	31	34	9.0000
:::	chr4:184192116-184192372(+)$1	256	2	5	9.0000
:EE	chr14:20920149-20920425(-)$1	276	9	12	9.0000
""d	chr13:98017232-98017514(+)$1	282	38	41	9.0000
sss	chr7:155573222-155573499(+)$1	277	51	54	9.0000
$$$	chr2:190648154-190648406(-)$1	252	18	21	9.0000
nnn	chr2:162017184-162017461(+)$1	277	229	232	9.0000
ooo	chr3:186505481-186505727(+)$1	246	22	25	9.0000
FCC	chr11:111175540-111175792(+)$1	252	8	11	9.0000
:::	chr21:46193454-46193683(-)$1	229	1	4	9.0000
BBK	chr16:4927276-4927545(+)$1	269	17	20	9.0000
:::	chr2:198284817-198285037(-)$1	220	3	6	9.0000
:GG	chr8:30567271-30567526(-)$1	255	7	10	9.0000
e33	chr19:19101973-19102320(-)$1	347	247	250	9.0000
qcc	chr20:43563936-43564193(+)$1	257	227	230	9.0000
fff	chr21:18940361-18940597(+)$1	236	4	7	9.0000
e>>	chr4:83276126-83276372(-)$1	246	25	28	9.0000
:II	chr11:85371494-85371755(-)$1	261	2	5	9.0000
YYC	chr20:43559245-43559494(+)$1	249	239	242	9.0000
EE{	chr2:70456072-70456333(-)$1	261	41	44	9.0000
c::	chr20:33891707-33892010(-)$1	303	251	254	9.0000
GG{	chr10:5022982-5023228(+)$1	246	50	53	9.0000
&&&	chr11:85374183-85374426(-)$1	243	38	41	9.0000
ooo	chr6:24720248-24720514(-)$1	266	245	248	9.0000

#DB
(..	chr10:5947883-5948160(+)$1	1	15	18	9.0000
((.	chrX:23802349-23802591(+)$1	1	21	24	9.0000
(..	chr21:44513222-44513474(-)$1	1	4	7	9.0000
..(	chr19:54972491-54972729(+)$1	1	139	142	9.0000
)))	chr4:159093913-159094186(-)$1	1	28	31	9.0000
...	chr4:107169314-107169573(-)$1	1	11	14	9.0000
(((	chr20:62559581-62559860(+)$1	1	25	28	9.0000
(((	chr17:57915547-57915775(+)$1	1	41	44	9.0000
)))	chr20:61299463-61299735(+)$1	1	30	33	9.0000
(((	chr19:9529705-9529957(-)$1	1	58	61	9.0000
(((	chr2:70454801-70455083(-)$1	1	8	11	9.0000
.))	chr7:72419481-72419742(-)$1	1	97	100	9.0000
.((	chr3:9516639-9516888(+)$1	1	37	40	9.0000
...	chr9:32985881-32986135(-)$1	1	18	21	9.0000
(((	chr16:56536214-56536480(-)$1	1	30	33	9.0000
...	chr3:8675522-8675794(-)$1	1	200	203	9.0000
...	chr13:20245258-20245530(+)$1	1	1	4	9.0000
.((	chr19:52597087-52597367(-)$1	1	235	238	9.0000
(..	chr6:41751748-41752008(+)$1	1	12	15	9.0000
)))	chr3:140682292-140682596(+)$1	1	28	31	9.0000
...	chr11:57558726-57558998(+)$1	1	63	66	9.0000
(((	chr1:1326767-1327048(-)$1	1	20	23	9.0000
...	chr3:9475866-9476144(+)$1	1	36	39	9.0000
...	chr3:48670932-48671186(-)$1	1	10	13	9.0000
...	chr18:12986731-12987033(+)$1	1	46	49	9.0000
(..	chr2:74750004-74750265(-)$1	1	156	159	9.0000
...	chr5:38886195-38886522(+)$1	1	47	50	9.0000
...	chr10:5042487-5042741(-)$1	1	22	25	9.0000
(..	chr17:27000282-27000538(+)$1	1	44	47	9.0000
(((	chr7:26229936-26230193(-)$1	1	53	56	9.0000
(((	chr16:28969891-28970180(+)$1	1	45	48	9.0000
(..	chr8:22269333-22269559(+)$1	1	79	82	9.0000
...	chr1:151196607-151196861(+)$1	1	9	12	9.0000
...	chr6:33231183-33231444(-)$1	1	0	3	9.0000
...	chr1:6273029-6273258(+)$1	1	14	17	9.0000
...	chr5:64859503-64859762(+)$1	1	0	3	9.0000
(((	chr7:97501123-97501416(-)$1	1	71	74	9.0000
((.	chr12:7252221-7252475(-)$1	1	61	64	9.0000
((.	chr17:30700310-30700570(+)$1	1	25	28	9.0000
...	chr2:209169464-209169754(+)$1	1	6	9	9.0000
...	chr7:26230684-26230888(-)$1	1	24	27	9.0000
...	chr6:160209768-160210010(-)$1	1	82	85	9.0000
...	chr17:7571951-7572249(-)$1	1	50	53	9.0000
(..	chr11:64540876-64541090(-)$1	1	52	55	9.0000
..(	chr3:132297752-132298014(-)$1	1	18	21	9.0000
..(	chr4:728367-728632(+)$1	1	8	11	9.0000
(((	chr14:23794344-23794594(+)$1	1	81	84	9.0000
(((	chr6:43151923-43152194(+)$1	1	91	94	9.0000
...	chr17:38189567-38189828(-)$1	1	224	227	9.0000
)))	chrX:23802292-23802521(+)$1	1	78	81	9.0000
...	chr16:30711824-30712127(+)$1	1	20	23	9.0000
...	chr2:207014487-207014754(-)$1	1	60	63	9.0000
..(	chr19:54971408-54971643(+)$1	1	55	58	9.0000
...	chr21:34931185-34931435(+)$1	1	6	9	9.0000
...	chrX:102940013-102940314(-)$1	1	5	8	9.0000
(..	chr6:99848033-99848295(-)$1	1	4	7	9.0000
(((	chr11:61109711-61109962(+)$1	1	15	18	9.0000
...	chr11:3765719-3766002(-)$1	1	41	44	9.0000
.((	chr11:95560839-95561094(+)$1	1	11	14	9.0000
...	chr11:64535639-64535881(-)$1	1	74	77	9.0000
.((	chr20:30959857-30960108(+)$1	1	13	16	9.0000
...	chr17:73956303-73956555(-)$1	1	30	33	9.0000
..)	chrX:48434091-48434353(+)$1	1	214	217	9.0000
...	chr17:46052785-46053030(+)$1	1	27	30	9.0000
..(	chr3:156869508-156869773(-)$1	1	2	5	9.0000
((.	chr11:93463741-93463987(-)$1	1	14	17	9.0000
(((	chr16:277929-278197(-)$1	1	61	64	9.0000
((.	chr14:24616307-24616538(-)$1	1	73	76	9.0000
(.(	chr4:83275984-83276252(-)$1	1	31	34	9.0000
...	chr4:184192116-184192372(+)$1	1	2	5	9.0000
.((	chr14:20920149-20920425(-)$1	1	9	12	9.0000
..(	chr13:98017232-98017514(+)$1	1	38	41	9.0000
...	chr7:155573222-155573499(+)$1	1	51	54	9.0000
...	chr2:190648154-190648406(-)$1	1	18	21	9.0000
...	chr2:162017184-162017461(+)$1	1	229	232	9.0000
...	chr3:186505481-186505727(+)$1	1	22	25	9.0000
(((	chr11:111175540-111175792(+)$1	1	8	11	9.0000
...	chr21:46193454-46193683(-)$1	1	1	4	9.0000
((.	chr16:4927276-4927545(+)$1	1	17	20	9.0000
...	chr2:198284817-198285037(-)$1	1	3	6	9.0000
.((	chr8:30567271-30567526(-)$1	1	7	10	9.0000
)..	chr19:19101973-19102320(-)$1	1	247	250	9.0000
.))	chr20:43563936-43564193(+)$1	1	227	230	9.0000
(((	chr21:18940361-18940597(+)$1	1	4	7	9.0000
)..	chr4:83276126-83276372(-)$1	1	25	28	9.0000
.((	chr11:85371494-85371755(-)$1	1	2	5	9.0000
..)	chr20:43559245-43559494(+)$1	1	239	242	9.0000
((.	chr2:70456072-70456333(-)$1	1	41	44	9.0000
)..	chr20:33891707-33892010(-)$1	1	251	254	9.0000
((.	chr10:5022982-5023228(+)$1	1	50	53	9.0000
...	chr11:85374183-85374426(-)$1	1	38	41	9.0000
...	chr6:24720248-24720514(-)$1	1	245	248	9.0000

#PSSM
U : 0.91	u : 0.08	
U : 0.91	u : 0.08	
A : 0.92	a : 0.07	

#score	828.0000000000002
#seq	92
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_transcript_m2_run1.nuc.txt

#NT
GGGCAG	chr9:131910813-131911071(+)$1	258	44	50	17.9999
GGGCAG	chr9:33112204-33112440(-)$1	236	116	122	17.9999
GGGCAG	chr16:69496922-69497159(+)$1	237	225	231	17.9999
GGGCAG	chr17:41167149-41167404(-)$1	255	199	205	17.9999
GGGCAG	chr8:134249802-134250058(-)$1	256	242	248	17.9999
GGGCAG	chr17:40126143-40126403(+)$1	260	5	11	17.9999
GGGCAG	chr6:33739965-33740223(-)$1	258	193	199	17.9999
GGGCAG	chr7:1585694-1585982(-)$1	288	238	244	17.9999
GGGCAG	chr22:42302130-42302398(+)$1	268	168	174	17.9999
GGGCAG	chr19:19466799-19467060(+)$1	261	135	141	17.9999
GGGCAG	chr17:73842084-73842386(-)$1	302	181	187	17.9999
GGGCAG	chr1:24121288-24121527(+)$1	239	68	74	17.9999
GGGCAG	chr21:45403243-45403504(+)$1	261	214	220	17.9999
GGGCAG	chr11:65178914-65179175(+)$1	261	243	249	17.9999
GGGCAG	chr9:139958112-139958391(-)$1	279	218	224	17.9999
GGGCAG	chr2:220414733-220415004(+)$1	271	129	135	17.9999
GGGCAG	chr19:8468871-8469245(+)$1	374	14	20	17.9999
GGGCAG	chr9:33112081-33112334(-)$1	253	10	16	17.9999
GGGCAG	chr16:4014626-4014876(-)$1	250	61	67	17.9999
GGGCAG	chr1:201103979-201104319(-)$1	340	194	200	17.9999
GGGCAG	chr17:74079316-74079571(-)$1	255	174	180	17.9999
GGGCAG	chr11:868564-868876(-)$1	312	143	149	17.9999
GGGCAG	chr19:19168573-19168837(+)$1	264	211	217	17.9999
GGGCAG	chr14:105676316-105676651(-)$1	335	94	100	17.9999
GGGCAG	chr18:77663499-77663828(-)$1	329	9	15	17.9999
gggcag	chr11:838427-838759(+)$1	332	309	315	17.9999
GGGCAG	chr17:6588598-6588930(-)$1	332	302	308	17.9999
GGGCAG	chr12:3392951-3393213(+)$1	262	226	232	17.9999
GGGCAG	chr17:76850011-76850307(-)$1	296	213	219	17.9999
GGGCAG	chr5:10679742-10680003(-)$1	261	118	124	17.9999
GGGCAG	chr16:89712039-89712360(-)$1	321	199	205	17.9999
GGGCAG	chr5:150408269-150408531(+)$1	262	174	180	17.9999
GGGCAG	chr19:39219952-39220229(+)$1	277	169	175	17.9999
GGGCAG	chr1:1375467-1375722(+)$1	255	69	75	17.9999
GGGCAG	chr19:647786-648046(-)$1	260	52	58	17.9999
GGGCAG	chr20:33590279-33590557(-)$1	278	42	48	17.9999
GGGCAG	chr17:80273650-80273922(-)$1	272	149	155	17.9999

#otherMatches

#Struct PSSM
hhhhhh	chr22:19024619-19024867(-)$1	248	156	162	17.9999
gggg:e	chr9:131910813-131911071(+)$1	258	44	50	17.9999
]fffff	chr9:33112204-33112440(-)$1	236	116	122	17.9999
ddd]bb	chr16:69496922-69497159(+)$1	237	225	231	17.9999
ddd]gg	chr17:41167149-41167404(-)$1	255	199	205	17.9999
GGGGGG	chr8:134249802-134250058(-)$1	256	242	248	17.9999
::::::	chr17:40126143-40126403(+)$1	260	5	11	17.9999
sssddd	chr6:33739965-33740223(-)$1	258	193	199	17.9999
ffJJJJ	chr7:1585694-1585982(-)$1	288	238	244	17.9999
IIIIII	chr22:42302130-42302398(+)$1	268	168	174	17.9999
dddeee	chr19:19466799-19467060(+)$1	261	135	141	17.9999
EEEEYY	chr17:73842084-73842386(-)$1	302	181	187	17.9999
dddhhh	chr1:24121288-24121527(+)$1	239	68	74	17.9999
dddd]f	chr21:45403243-45403504(+)$1	261	214	220	17.9999
eeee:C	chr11:65178914-65179175(+)$1	261	243	249	17.9999
gggggg	chr9:139958112-139958391(-)$1	279	218	224	17.9999
iiia[=	chr2:220414733-220415004(+)$1	271	129	135	17.9999
HHHHHH	chr19:8468871-8469245(+)$1	374	14	20	17.9999
HHHHHH	chr9:33112081-33112334(-)$1	253	10	16	17.9999
dddd[b	chr16:4014626-4014876(-)$1	250	61	67	17.9999
]fffff	chr1:201103979-201104319(-)$1	340	194	200	17.9999
eeeee]	chr17:74079316-74079571(-)$1	255	174	180	17.9999
eccc[f	chr11:868564-868876(-)$1	312	143	149	17.9999
EEEE::	chr19:19168573-19168837(+)$1	264	211	217	17.9999
gg[ddd	chr14:105676316-105676651(-)$1	335	94	100	17.9999
HKKBB{	chr18:77663499-77663828(-)$1	329	9	15	17.9999
JJJJJJ	chr11:838427-838759(+)$1	332	309	315	17.9999
ddd444	chr17:6588598-6588930(-)$1	332	302	308	17.9999
d:GGGG	chr12:3392951-3393213(+)$1	262	226	232	17.9999
iooooo	chr17:76850011-76850307(-)$1	296	213	219	17.9999
gggggg	chr5:10679742-10680003(-)$1	261	118	124	17.9999
ddffff	chr16:89712039-89712360(-)$1	321	199	205	17.9999
gggggg	chr5:150408269-150408531(+)$1	262	174	180	17.9999
dddggg	chr19:39219952-39220229(+)$1	277	169	175	17.9999
[ccc!!	chr1:1375467-1375722(+)$1	255	69	75	17.9999
gg[ddd	chr19:647786-648046(-)$1	260	52	58	17.9999
gggggg	chr20:33590279-33590557(-)$1	278	42	48	17.9999
f]eeee	chr17:80273650-80273922(-)$1	272	149	155	17.9999

#DB
))))))	chr22:19024619-19024867(-)$1	1	156	162	17.9999
)))).(	chr9:131910813-131911071(+)$1	1	44	50	17.9999
.)))))	chr9:33112204-33112440(-)$1	1	116	122	17.9999
))).))	chr16:69496922-69497159(+)$1	1	225	231	17.9999
))).))	chr17:41167149-41167404(-)$1	1	199	205	17.9999
))))))	chr8:134249802-134250058(-)$1	1	242	248	17.9999
......	chr17:40126143-40126403(+)$1	1	5	11	17.9999
...)))	chr6:33739965-33740223(-)$1	1	193	199	17.9999
))))))	chr7:1585694-1585982(-)$1	1	238	244	17.9999
((((((	chr22:42302130-42302398(+)$1	1	168	174	17.9999
((((((	chr19:19466799-19467060(+)$1	1	135	141	17.9999
))))..	chr17:73842084-73842386(-)$1	1	181	187	17.9999
)))(((	chr1:24121288-24121527(+)$1	1	68	74	17.9999
)))).)	chr21:45403243-45403504(+)$1	1	214	220	17.9999
)))).)	chr11:65178914-65179175(+)$1	1	243	249	17.9999
((((((	chr9:139958112-139958391(-)$1	1	218	224	17.9999
((((.(	chr2:220414733-220415004(+)$1	1	129	135	17.9999
((((((	chr19:8468871-8469245(+)$1	1	14	20	17.9999
((((((	chr9:33112081-33112334(-)$1	1	10	16	17.9999
((((.(	chr16:4014626-4014876(-)$1	1	61	67	17.9999
.)))))	chr1:201103979-201104319(-)$1	1	194	200	17.9999
))))).	chr17:74079316-74079571(-)$1	1	174	180	17.9999
)(((.(	chr11:868564-868876(-)$1	1	143	149	17.9999
))))..	chr19:19168573-19168837(+)$1	1	211	217	17.9999
((.(((	chr14:105676316-105676651(-)$1	1	94	100	17.9999
(..((.	chr18:77663499-77663828(-)$1	1	9	15	17.9999
))))))	chr11:838427-838759(+)$1	1	309	315	17.9999
)))...	chr17:6588598-6588930(-)$1	1	302	308	17.9999
).))))	chr12:3392951-3393213(+)$1	1	226	232	17.9999
(.....	chr17:76850011-76850307(-)$1	1	213	219	17.9999
))))))	chr5:10679742-10680003(-)$1	1	118	124	17.9999
((((((	chr16:89712039-89712360(-)$1	1	199	205	17.9999
))))))	chr5:150408269-150408531(+)$1	1	174	180	17.9999
)))(((	chr19:39219952-39220229(+)$1	1	169	175	17.9999
.(((..	chr1:1375467-1375722(+)$1	1	69	75	17.9999
((.(((	chr19:647786-648046(-)$1	1	52	58	17.9999
((((((	chr20:33590279-33590557(-)$1	1	42	48	17.9999
).))))	chr17:80273650-80273922(-)$1	1	149	155	17.9999

#PSSM
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	

#score	683.9999999999999
#seq	38
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_transcript_m3_run1.nuc.txt

#NT
uggccagg	chr20:5552203-5552460(-)$1	257	92	100	15.4285
gugccagg	chr1:22082186-22082445(-)$1	259	193	201	14.7142
GGGCCAGC	chr14:105865723-105865978(+)$1	255	49	57	14.6122
uggccagg	chr20:45845114-45845369(-)$1	255	98	106	15.4285
GGGCCUGG	chr11:65743934-65744176(+)$1	242	158	166	16.3469
uggccagg	chr9:134295962-134296231(+)$1	269	118	126	15.4285
ggggcagg	chr14:90864163-90864437(+)$1	274	78	86	16.4489
GGGACAGG	chr21:45734389-45734656(+)$1	267	224	232	15.4285
gggcccgg	chr3:195635555-195635812(-)$1	257	44	52	16.2448
GGGCCAAG	chr14:23537414-23537709(-)$1	295	37	45	14.3061
GGACCAGG	chr16:88527514-88527802(+)$1	288	180	188	14.7142
AGGCCAGG	chr11:67165674-67165963(-)$1	289	207	215	15.2244
GGGCCUGG	chr2:101924418-101924672(-)$1	254	175	183	16.3469
GGGGCAGG	chr17:4797580-4797889(+)$1	309	180	188	16.4489
GGGGCUGG	chr22:50041659-50041903(-)$1	244	7	15	13.6938
GGGCCGGG	chrX:153236493-153236760(-)$1	267	65	73	15.8367
UGGCCAGG	chr17:27047467-27047734(+)$1	267	170	178	15.4285
gggccagg	chr19:6739618-6739892(+)$1	274	48	56	19.1020
GGGGCCGG	chr11:66384687-66384933(+)$1	246	84	92	13.5918
GGGCCUGG	chr1:78425988-78426218(-)$1	230	119	127	16.3469
gguccagg	chr10:71984888-71985136(-)$1	248	33	41	14.6122
GGGCCAGG	chr12:7037268-7037527(+)$1	259	88	96	19.1020
uggccagg	chr6:36564996-36565229(+)$1	233	90	98	15.4285
gugccagg	chr19:12787505-12787763(-)$1	258	155	163	14.7142
GGGCCCGG	chr15:91445985-91446241(+)$1	256	186	194	16.2448
GGGGCAGG	chr17:38286190-38286478(+)$1	288	216	224	16.4489
GGGGCUGG	chr8:128749182-128749431(+)$1	249	23	31	13.6938
GGGGCAGG	chr19:1412157-1412410(+)$1	253	166	174	16.4489
GGGCAAGG	chr12:123872656-123872918(+)$1	262	128	136	14.4081
GGGCCCGG	chr10:103874439-103874671(-)$1	232	72	80	16.2448
GGACCAGG	chr2:178082455-178082673(+)$1	218	33	41	14.7142
GGGCCUGG	chr7:1521643-1521985(-)$1	342	194	202	16.3469
GGGGCAGG	chr9:139904710-139904981(-)$1	271	77	85	16.4489
ggggcagg	chr5:36241725-36241980(-)$1	255	220	228	16.4489
gggcccgg	chr2:47401324-47401580(-)$1	256	91	99	16.2448
GGGCCAGA	chr12:132386610-132386882(+)$1	272	60	68	14.5102
AGGCCAGG	chr16:89654593-89654868(+)$1	275	239	247	15.2244
AGGCCAGG	chr16:30535517-30535775(-)$1	258	121	129	15.2244
GGGGCAGG	chr8:48872501-48872753(-)$1	252	180	188	16.4489
GGGCCAGC	chr13:92000768-92001012(+)$1	244	223	231	14.6122
gugccagg	chr22:41897266-41897532(+)$1	266	126	134	14.7142
GGGCGAGG	chr22:38689546-38689817(-)$1	271	205	213	14.4081
GGGCCCGG	chr9:131465684-131465928(+)$1	244	131	139	16.2448
gggccggg	chr2:54197781-54198043(-)$1	262	71	79	15.8367
GGGCCAGG	chr17:64370154-64370400(+)$1	246	66	74	19.1020
GGCCCAGG	chr3:38207036-38207317(+)$1	281	35	43	14.6122
GGGCCUGG	chr16:89760389-89760653(+)$1	264	55	63	16.3469
GGGGCAGG	chr17:79658566-79658812(+)$1	246	67	75	16.4489

#otherMatches

#Struct PSSM
eeeee22d	chr11:62285992-62286249(-)$1	257	204	212	19.1020
GGGG:ddd	chr20:5552203-5552460(-)$1	257	92	100	15.4285
eeeeeddd	chr1:22082186-22082445(-)$1	259	193	201	14.7142
eennnnne	chr14:105865723-105865978(+)$1	255	49	57	14.6122
bDDDD{FF	chr20:45845114-45845369(-)$1	255	98	106	15.4285
fffff:ff	chr11:65743934-65744176(+)$1	242	158	166	16.3469
ddd!!ggg	chr9:134295962-134296231(+)$1	269	118	126	15.4285
fffff&&&	chr14:90864163-90864437(+)$1	274	78	86	16.4489
GGGGGYYC	chr21:45734389-45734656(+)$1	267	224	232	15.4285
mmmccc]f	chr3:195635555-195635812(-)$1	257	44	52	16.2448
ggg]eeee	chr14:23537414-23537709(-)$1	295	37	45	14.3061
mmffffff	chr16:88527514-88527802(+)$1	288	180	188	14.7142
mmmbb22c	chr11:67165674-67165963(-)$1	289	207	215	15.2244
qffffff:	chr2:101924418-101924672(-)$1	254	175	183	16.3469
ee!!cccq	chr17:4797580-4797889(+)$1	309	180	188	16.4489
KKCCC{HH	chr22:50041659-50041903(-)$1	244	7	15	13.6938
bdddd###	chrX:153236493-153236760(-)$1	267	65	73	15.8367
55eeeeec	chr17:27047467-27047734(+)$1	267	170	178	15.4285
qqqqqqqq	chr19:6739618-6739892(+)$1	274	48	56	19.1020
iiiiiiii	chr11:66384687-66384933(+)$1	246	84	92	13.5918
hhhhhhhh	chr1:78425988-78426218(-)$1	230	119	127	16.3469
=====$$$	chr10:71984888-71985136(-)$1	248	33	41	14.6122
gggg::DD	chr12:7037268-7037527(+)$1	259	88	96	19.1020
+bba[ddd	chr6:36564996-36565229(+)$1	233	90	98	15.4285
EE:=====	chr19:12787505-12787763(-)$1	258	155	163	14.7142
c[cccooo	chr15:91445985-91446241(+)$1	256	186	194	16.2448
ddffffff	chr17:38286190-38286478(+)$1	288	216	224	16.4489
EE:bb[gg	chr8:128749182-128749431(+)$1	249	23	31	13.6938
fffffooo	chr19:1412157-1412410(+)$1	253	166	174	16.4489
fccc!!dd	chr12:123872656-123872918(+)$1	262	128	136	14.4081
[ffffff[	chr10:103874439-103874671(-)$1	232	72	80	16.2448
DDDccc!!	chr2:178082455-178082673(+)$1	218	33	41	14.7142
b[ccc!!e	chr7:1521643-1521985(-)$1	342	194	202	16.3469
rrrr====	chr9:139904710-139904981(-)$1	271	77	85	16.4489
gDDDDYYD	chr5:36241725-36241980(-)$1	255	220	228	16.4489
c[ddddff	chr2:47401324-47401580(-)$1	256	91	99	16.2448
ddd"""ee	chr12:132386610-132386882(+)$1	272	60	68	14.5102
$$ffffff	chr16:89654593-89654868(+)$1	275	239	247	15.2244
bb]bb:::	chr16:30535517-30535775(-)$1	258	121	129	15.2244
gggggggF	chr8:48872501-48872753(-)$1	252	180	188	16.4489
HHHHHH//	chr13:92000768-92001012(+)$1	244	223	231	14.6122
nnnndddd	chr22:41897266-41897532(+)$1	266	126	134	14.7142
gggggg22	chr22:38689546-38689817(-)$1	271	205	213	14.4081
}ACCCCCC	chr9:131465684-131465928(+)$1	244	131	139	16.2448
eeeeeooo	chr2:54197781-54198043(-)$1	262	71	79	15.8367
dddd!!==	chr17:64370154-64370400(+)$1	246	66	74	19.1020
ffffff[a	chr3:38207036-38207317(+)$1	281	35	43	14.6122
dd333ccc	chr16:89760389-89760653(+)$1	264	55	63	16.3469
####eeee	chr17:79658566-79658812(+)$1	246	67	75	16.4489

#DB
)))))..)	chr11:62285992-62286249(-)$1	1	204	212	19.1020
((((.(((	chr20:5552203-5552460(-)$1	1	92	100	15.4285
)))))(((	chr1:22082186-22082445(-)$1	1	193	201	14.7142
((.....)	chr14:105865723-105865978(+)$1	1	49	57	14.6122
)((((.((	chr20:45845114-45845369(-)$1	1	98	106	15.4285
))))).((	chr11:65743934-65744176(+)$1	1	158	166	16.3469
(((..(((	chr9:134295962-134296231(+)$1	1	118	126	15.4285
(((((...	chr14:90864163-90864437(+)$1	1	78	86	16.4489
)))))..)	chr21:45734389-45734656(+)$1	1	224	232	15.4285
...))).)	chr3:195635555-195635812(-)$1	1	44	52	16.2448
))).))))	chr14:23537414-23537709(-)$1	1	37	45	14.3061
..))))))	chr16:88527514-88527802(+)$1	1	180	188	14.7142
...))..)	chr11:67165674-67165963(-)$1	1	207	215	15.2244
.)))))).	chr2:101924418-101924672(-)$1	1	175	183	16.3469
((..(((.	chr17:4797580-4797889(+)$1	1	180	188	16.4489
..(((.((	chr22:50041659-50041903(-)$1	1	7	15	13.6938
(((((...	chrX:153236493-153236760(-)$1	1	65	73	15.8367
..))))))	chr17:27047467-27047734(+)$1	1	170	178	15.4285
........	chr19:6739618-6739892(+)$1	1	48	56	19.1020
((((((((	chr11:66384687-66384933(+)$1	1	84	92	13.5918
))))))))	chr1:78425988-78426218(-)$1	1	119	127	16.3469
(((((...	chr10:71984888-71985136(-)$1	1	33	41	14.6122
))))..((	chr12:7037268-7037527(+)$1	1	88	96	19.1020
.(((.(((	chr6:36564996-36565229(+)$1	1	90	98	15.4285
)).(((((	chr19:12787505-12787763(-)$1	1	155	163	14.7142
(.(((...	chr15:91445985-91446241(+)$1	1	186	194	16.2448
))((((((	chr17:38286190-38286478(+)$1	1	216	224	16.4489
((.((.((	chr8:128749182-128749431(+)$1	1	23	31	13.6938
(((((...	chr19:1412157-1412410(+)$1	1	166	174	16.4489
)(((..((	chr12:123872656-123872918(+)$1	1	128	136	14.4081
.((((((.	chr10:103874439-103874671(-)$1	1	72	80	16.2448
((((((..	chr2:178082455-178082673(+)$1	1	33	41	14.7142
(.(((..(	chr7:1521643-1521985(-)$1	1	194	202	16.3469
....))))	chr9:139904710-139904981(-)$1	1	77	85	16.4489
)))))..)	chr5:36241725-36241980(-)$1	1	220	228	16.4489
(.((((((	chr2:47401324-47401580(-)$1	1	91	99	16.2448
(((...((	chr12:132386610-132386882(+)$1	1	60	68	14.5102
..((((((	chr16:89654593-89654868(+)$1	1	239	247	15.2244
)).))...	chr16:30535517-30535775(-)$1	1	121	129	15.2244
))))))))	chr8:48872501-48872753(-)$1	1	180	188	16.4489
))))))..	chr13:92000768-92001012(+)$1	1	223	231	14.6122
....))))	chr22:41897266-41897532(+)$1	1	126	134	14.7142
))))))..	chr22:38689546-38689817(-)$1	1	205	213	14.4081
.))))(((	chr9:131465684-131465928(+)$1	1	131	139	16.2448
(((((...	chr2:54197781-54198043(-)$1	1	71	79	15.8367
((((..((	chr17:64370154-64370400(+)$1	1	66	74	19.1020
((((((.(	chr3:38207036-38207317(+)$1	1	35	43	14.6122
))...)))	chr16:89760389-89760653(+)$1	1	55	63	16.3469
....((((	chr17:79658566-79658812(+)$1	1	67	75	16.4489

#PSSM
G : 0.63	g : 0.20	u : 0.08	A : 0.06	U : 0.02	
G : 0.71	g : 0.22	u : 0.06	
G : 0.65	g : 0.26	A : 0.04	u : 0.02	C : 0.02	
C : 0.51	c : 0.24	G : 0.18	g : 0.04	A : 0.02	
C : 0.67	c : 0.28	A : 0.02	G : 0.02	
A : 0.46	a : 0.22	U : 0.14	C : 0.08	c : 0.04	G : 0.02	g : 0.02	
G : 0.69	g : 0.28	A : 0.02	
G : 0.65	g : 0.28	C : 0.04	A : 0.02	

#score	771.5102040816334
#seq	49
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_transcript_m1_run2.nuc.txt

#NT
gcacacacauacacgcacacacac	chr21:46904152-46904413(+)$1	261	119	143	48.1111
gcacacacacaugcgcacacacac	chr11:2152504-2152708(-)$1	204	27	51	45.1481
ccccacacacacacucacacacaa	chr10:16798643-16798980(-)$1	337	161	185	42.0925
auacacacauauacacacacauac	chr19:54062180-54062447(+)$1	267	42	66	42.0925
acacacacccccauacacacacac	chr8:38775960-38776222(+)$1	262	212	236	46.1666
acacccacacagacacacacauac	chr12:123997498-123997780(-)$1	282	23	47	45.5185
acacacacacacacagacacacac	chr17:4618610-4618867(+)$1	257	155	179	53.9444
acacacacgcacacacaugcacac	chr11:2153171-2153376(-)$1	205	161	185	48.3888
acacacacccacacccccacacac	chr7:157800554-157800775(-)$1	221	35	59	47.6481
acacccacacucacacccacccac	chr10:134177762-134178020(+)$1	258	186	210	41.2592
acacacacacacacacacacacac	chr11:64038849-64039131(+)$1	282	5	29	58.2962
acacacacgcacacacaugcacac	chr11:2153032-2153236(-)$1	204	21	45	48.3888
gcacacacacaugcgcacacacac	chr11:2152605-2152807(-)$1	202	126	150	45.1481
acacacacacacacacacacacac	chr12:117588550-117588849(-)$1	299	41	65	58.2962
GCAUACACCCACAGAUACACACAC	chr17:80786272-80786511(+)$1	239	59	83	38.9444
acauagacacacacucauacacac	chr16:4718279-4718515(+)$1	236	108	132	44.2222
CGAGacacacacacacacacacac	chr15:53082262-53082524(-)$1	262	237	261	45.7962
acacacacacacacacacacacac	chr20:31960754-31961064(-)$1	310	83	107	58.2962
acacacacacacacacacacacac	chr3:38534166-38534459(+)$1	293	56	80	58.2962
acacacacacacacacagacacac	chr17:38243230-38243516(+)$1	286	229	253	55.2407
gcacacacacaugcgcacacacac	chr11:2152572-2152778(-)$1	206	97	121	45.1481
acacacacacucacauccacgcac	chr17:95177-95429(-)$1	252	150	174	41.4444
acucacacacacacacauacacac	chr17:6614999-6615212(-)$1	213	159	183	51.2592
ucacacaaacacacauacacacac	chr10:134229014-134229370(+)$1	356	42	66	45.7037
acacacacgcauacucauacacac	chr4:5827712-5828006(+)$1	294	138	162	46.1666
acacacacgcacacacaugcacac	chr11:2153143-2153348(-)$1	205	133	157	48.3888
acacacacccacacccccacacac	chr7:157800576-157800870(-)$1	294	130	154	47.6481
acacacacacacacacacacacac	chr2:178214304-178214579(-)$1	275	56	80	58.2962
acacacacacacacacacacacac	chr3:126255666-126255917(+)$1	251	73	97	58.2962
acacacacacacacacacacacac	chr3:194824762-194825021(-)$1	259	46	70	58.2962
acacacagacacacacagauacac	chr2:97467812-97468108(+)$1	296	66	90	46.4444
acauauacacacauacacaaacac	chr4:187123845-187124072(+)$1	227	8	32	41.6296
acacacacacacacgcacacacac	chr20:62396329-62396718(-)$1	389	231	255	55.4259
acacacucauacacacagacucac	chr11:70482404-70482660(-)$1	256	157	181	42.1851
acaccuacacacaccccuacacac	chr22:35738931-35739223(+)$1	292	2	26	40.0555
acacacacacacacacacacacac	chr1:51157793-51158079(-)$1	286	115	139	58.2962
gcacacacacaugcgcacacacac	chr11:2152556-2152762(-)$1	206	81	105	45.1481
acacacacacauacacacagacac	chr7:55271725-55271973(+)$1	248	124	148	51.0740
acacacacacacacacacacacac	chr19:7197654-7197941(-)$1	287	148	172	58.2962
acacacucauacacacagacucac	chr11:70482170-70482528(-)$1	358	25	49	42.1851
acacacacaugcacacacaggcac	chr11:70483039-70483292(-)$1	253	39	63	41.1666
gcucacacacauacacacucacac	chrX:3740669-3740925(-)$1	256	132	156	43.2037
ccacacacacacacacacaGAGAC	chr2:97467329-97467618(+)$1	289	63	87	45.9814
acacggacacauacacauacacac	chr17:76889516-76889789(-)$1	273	55	79	43.8518
acacacacacacacacacacacac	chr14:100044166-100044402(-)$1	236	122	146	58.2962
ccacacacucacacUCAGUCACAC	chr2:239982642-239982903(-)$1	261	58	82	40.5185
auauacauacacacacacacacac	chr10:15373604-15373904(-)$1	300	145	169	45.3333
acauacacacaugcgcgcacacac	chr7:1928160-1928401(-)$1	241	98	122	40.2407
acacacacacacaaacuuauacac	chr3:48583580-48583870(-)$1	290	119	143	43.1111
acacacacgcacacacaugcacac	chr11:2153178-2153380(-)$1	202	165	189	48.3888
acacacaugcacacacuuacacac	chr4:187123735-187124024(+)$1	289	32	56	43.9444
acacacacucacauagacacacac	chr1:12645106-12645358(-)$1	252	98	122	46.1666
acacauacacaccugcacacacac	chr13:113616441-113616898(+)$1	457	191	215	42.7407

#otherMatches

#Struct PSSM
=:::::::::::::::::::::::	chr3:188503221-188503505(+)$1	284	114	138	58.2962
oooooffffff333bb>>>>>>>>	chr21:46904152-46904413(+)$1	261	119	143	48.1111
cc:::::::::ddddqqqqqqqqd	chr11:2152504-2152708(-)$1	204	27	51	45.1481
::::::::::::::::::::::::	chr10:16798643-16798980(-)$1	337	161	185	42.0925
::::::::::::::::::::::::	chr19:54062180-54062447(+)$1	267	42	66	42.0925
::::::::::::::::::::::::	chr8:38775960-38776222(+)$1	262	212	236	46.1666
::::::::::::::::::::::::	chr12:123997498-123997780(-)$1	282	23	47	45.5185
::::::::::::::::::::::::	chr17:4618610-4618867(+)$1	257	155	179	53.9444
qqqqqqqqbb:::::EEEEE::::	chr11:2153171-2153376(-)$1	205	161	185	48.3888
::::::::::::::::::::::::	chr7:157800554-157800775(-)$1	221	35	59	47.6481
:::::::::CCC::::::::::::	chr10:134177762-134178020(+)$1	258	186	210	41.2592
::::::::::::::::::::::::	chr11:64038849-64039131(+)$1	282	5	29	58.2962
::::::::cccooooooccc::::	chr11:2153032-2153236(-)$1	204	21	45	48.3888
cc:::::::::ddddqqqqqqqqd	chr11:2152605-2152807(-)$1	202	126	150	45.1481
::::::::::::::::::::::::	chr12:117588550-117588849(-)$1	299	41	65	58.2962
EEEE{BBWWWWWWWWWWWWWWFFF	chr17:80786272-80786511(+)$1	239	59	83	38.9444
^^^^^^^^^^^^^^^^^^^^^^^^	chr16:4718279-4718515(+)$1	236	108	132	44.2222
C:::::::::::::::::::::::	chr15:53082262-53082524(-)$1	262	237	261	45.7962
^^^^^^^^^^^^^^^^^^^^^^^^	chr20:31960754-31961064(-)$1	310	83	107	58.2962
deeeee::::::::::::::::::	chr3:38534166-38534459(+)$1	293	56	80	58.2962
::::::::::::::::::::::::	chr17:38243230-38243516(+)$1	286	229	253	55.2407
cc:::::::::ddddqqqqqqqqd	chr11:2152572-2152778(-)$1	206	97	121	45.1481
bb:::::::::::::DDDD}CCC@	chr17:95177-95429(-)$1	252	150	174	41.4444
G:::::::::::::::::::::::	chr17:6614999-6615212(-)$1	213	159	183	51.2592
D{CCC{FFFFFF{BB:::::::::	chr10:134229014-134229370(+)$1	356	42	66	45.7037
::::::::BB}DDDD:::::::::	chr4:5827712-5828006(+)$1	294	138	162	46.1666
::::::::cccooooooccc::::	chr11:2153143-2153348(-)$1	205	133	157	48.3888
::::::::::::::::::::::::	chr7:157800576-157800870(-)$1	294	130	154	47.6481
::::::::::::::::::::::::	chr2:178214304-178214579(-)$1	275	56	80	58.2962
::::::::::::::::::::::::	chr3:126255666-126255917(+)$1	251	73	97	58.2962
::::::::::::::::::::::::	chr3:194824762-194825021(-)$1	259	46	70	58.2962
::::::::::::::::::::::::	chr2:97467812-97468108(+)$1	296	66	90	46.4444
::::::::::::::::::::::::	chr4:187123845-187124072(+)$1	227	8	32	41.6296
::::::::::::::::::::::::	chr20:62396329-62396718(-)$1	389	231	255	55.4259
e^^^^^^^^^^^^^^^^^^^^^^^	chr11:70482404-70482660(-)$1	256	157	181	42.1851
::::::::::::::::::::::::	chr22:35738931-35739223(+)$1	292	2	26	40.0555
eeeee:::::::::::::::::::	chr1:51157793-51158079(-)$1	286	115	139	58.2962
cc:::::::::FFFFFF:::::::	chr11:2152556-2152762(-)$1	206	81	105	45.1481
::::::::::::::::::::::::	chr7:55271725-55271973(+)$1	248	124	148	51.0740
b:::::::::::::::::::::::	chr19:7197654-7197941(-)$1	287	148	172	58.2962
e^^^^^^^^^^^^^^^^^^^^^^^	chr11:70482170-70482528(-)$1	358	25	49	42.1851
^^^^^^^ccc]ddddeeeee]ccc	chr11:70483039-70483292(-)$1	253	39	63	41.1666
ee^^^^^^^^^^^^^^^^^^^^^^	chrX:3740669-3740925(-)$1	256	132	156	43.2037
::::::::::::::::::::::::	chr2:97467329-97467618(+)$1	289	63	87	45.9814
:::ccc^^^^^^^^^^^^^^^^^^	chr17:76889516-76889789(-)$1	273	55	79	43.8518
hhhh55555ccc]a::::::::::	chr14:100044166-100044402(-)$1	236	122	146	58.2962
DDDD:::::eeeee"""bb"""dd	chr2:239982642-239982903(-)$1	261	58	82	40.5185
iiii:::::::::::::::eeeee	chr10:15373604-15373904(-)$1	300	145	169	45.3333
[cccooooooccc]a]bb::::::	chr7:1928160-1928401(-)$1	241	98	122	40.2407
:::::::::::::::::=======	chr3:48583580-48583870(-)$1	290	119	143	43.1111
qqqqqqqqbb:::::EEEEE||||	chr11:2153178-2153380(-)$1	202	165	189	48.3888
doooooodddd55555eeeee:::	chr4:187123735-187124024(+)$1	289	32	56	43.9444
pppppppccc::::::::::::::	chr1:12645106-12645358(-)$1	252	98	122	46.1666
:::::ccc[eeeee[ccc++++++	chr13:113616441-113616898(+)$1	457	191	215	42.7407

#DB
).......................	chr3:188503221-188503505(+)$1	1	114	138	58.2962
.....))))))...))........	chr21:46904152-46904413(+)$1	1	119	143	48.1111
)).........((((........)	chr11:2152504-2152708(-)$1	1	27	51	45.1481
........................	chr10:16798643-16798980(-)$1	1	161	185	42.0925
........................	chr19:54062180-54062447(+)$1	1	42	66	42.0925
........................	chr8:38775960-38776222(+)$1	1	212	236	46.1666
........................	chr12:123997498-123997780(-)$1	1	23	47	45.5185
........................	chr17:4618610-4618867(+)$1	1	155	179	53.9444
........)).....)))))....	chr11:2153171-2153376(-)$1	1	161	185	48.3888
........................	chr7:157800554-157800775(-)$1	1	35	59	47.6481
.........)))............	chr10:134177762-134178020(+)$1	1	186	210	41.2592
........................	chr11:64038849-64039131(+)$1	1	5	29	58.2962
........(((......)))....	chr11:2153032-2153236(-)$1	1	21	45	48.3888
)).........((((........)	chr11:2152605-2152807(-)$1	1	126	150	45.1481
........................	chr12:117588550-117588849(-)$1	1	41	65	58.2962
((((.((..............(((	chr17:80786272-80786511(+)$1	1	59	83	38.9444
........................	chr16:4718279-4718515(+)$1	1	108	132	44.2222
).......................	chr15:53082262-53082524(-)$1	1	237	261	45.7962
........................	chr20:31960754-31961064(-)$1	1	83	107	58.2962
))))))..................	chr3:38534166-38534459(+)$1	1	56	80	58.2962
........................	chr17:38243230-38243516(+)$1	1	229	253	55.2407
)).........((((........)	chr11:2152572-2152778(-)$1	1	97	121	45.1481
)).............)))).))).	chr17:95177-95429(-)$1	1	150	174	41.4444
).......................	chr17:6614999-6615212(-)$1	1	159	183	51.2592
(.(((.((((((.((.........	chr10:134229014-134229370(+)$1	1	42	66	45.7037
........)).)))).........	chr4:5827712-5828006(+)$1	1	138	162	46.1666
........(((......)))....	chr11:2153143-2153348(-)$1	1	133	157	48.3888
........................	chr7:157800576-157800870(-)$1	1	130	154	47.6481
........................	chr2:178214304-178214579(-)$1	1	56	80	58.2962
........................	chr3:126255666-126255917(+)$1	1	73	97	58.2962
........................	chr3:194824762-194825021(-)$1	1	46	70	58.2962
........................	chr2:97467812-97468108(+)$1	1	66	90	46.4444
........................	chr4:187123845-187124072(+)$1	1	8	32	41.6296
........................	chr20:62396329-62396718(-)$1	1	231	255	55.4259
(.......................	chr11:70482404-70482660(-)$1	1	157	181	42.1851
........................	chr22:35738931-35739223(+)$1	1	2	26	40.0555
)))))...................	chr1:51157793-51158079(-)$1	1	115	139	58.2962
)).........)))))).......	chr11:2152556-2152762(-)$1	1	81	105	45.1481
........................	chr7:55271725-55271973(+)$1	1	124	148	51.0740
).......................	chr19:7197654-7197941(-)$1	1	148	172	58.2962
(.......................	chr11:70482170-70482528(-)$1	1	25	49	42.1851
.......))).))))))))).)))	chr11:70483039-70483292(-)$1	1	39	63	41.1666
((......................	chrX:3740669-3740925(-)$1	1	132	156	43.2037
........................	chr2:97467329-97467618(+)$1	1	63	87	45.9814
...(((..................	chr17:76889516-76889789(-)$1	1	55	79	43.8518
)))).....))).)..........	chr14:100044166-100044402(-)$1	1	122	146	58.2962
((((.....(((((...((...((	chr2:239982642-239982903(-)$1	1	58	82	40.5185
))))...............(((((	chr10:15373604-15373904(-)$1	1	145	169	45.3333
.(((......))).).))......	chr7:1928160-1928401(-)$1	1	98	122	40.2407
.................(((((((	chr3:48583580-48583870(-)$1	1	119	143	43.1111
........)).....)))))....	chr11:2153178-2153380(-)$1	1	165	189	48.3888
(......)))).....)))))...	chr4:187123735-187124024(+)$1	1	32	56	43.9444
.......)))..............	chr1:12645106-12645358(-)$1	1	98	122	46.1666
.....(((.(((((.(((......	chr13:113616441-113616898(+)$1	1	191	215	42.7407

#PSSM
a : 0.77	g : 0.11	c : 0.05	G : 0.01	C : 0.01	u : 0.01	
c : 0.92	u : 0.03	C : 0.01	G : 0.01	
a : 0.90	A : 0.03	u : 0.03	c : 0.01	
c : 0.88	u : 0.07	U : 0.01	G : 0.01	
a : 0.90	c : 0.05	A : 0.01	g : 0.01	
c : 0.88	u : 0.05	g : 0.03	C : 0.01	
a : 0.94	u : 0.03	A : 0.01	
c : 0.90	u : 0.03	C : 0.01	a : 0.01	g : 0.01	
a : 0.77	g : 0.11	c : 0.05	u : 0.03	C : 0.01	
c : 0.88	u : 0.09	C : 0.01	
a : 0.90	u : 0.03	c : 0.01	A : 0.01	g : 0.01	
c : 0.77	u : 0.18	g : 0.01	C : 0.01	
a : 0.87	g : 0.09	A : 0.01	c : 0.01	
c : 0.88	u : 0.07	G : 0.01	a : 0.01	
a : 0.70	g : 0.14	u : 0.05	c : 0.05	A : 0.01	U : 0.01	
c : 0.88	g : 0.03	u : 0.03	U : 0.01	C : 0.01	
a : 0.81	c : 0.09	A : 0.03	u : 0.03	g : 0.01	
c : 0.68	u : 0.20	g : 0.07	C : 0.01	G : 0.01	
a : 0.87	g : 0.07	A : 0.01	u : 0.01	U : 0.01	
c : 0.85	C : 0.03	u : 0.03	g : 0.03	a : 0.01	G : 0.01	
a : 0.85	A : 0.05	g : 0.03	u : 0.03	c : 0.01	
c : 0.90	u : 0.03	C : 0.03	G : 0.01	
a : 0.94	A : 0.05	
c : 0.92	C : 0.05	a : 0.01	

#score	2593.925925925922
#seq	54
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_UTR_m3_run1.nuc.txt

#NT
UGGC	chr11:2159370-2159573(-)$1	203	23	27	11.9999
UGGC	chr11:2154077-2154283(-)$1	206	47	51	11.9999
UGGC	chr11:2156516-2156719(-)$1	203	12	16	11.9999
UGGC	chr11:2154097-2154301(-)$1	204	65	69	11.9999
UGGC	chr12:123997898-123998223(-)$1	325	40	44	11.9999
UGGC	chr16:89999776-90000050(+)$1	274	12	16	11.9999
UGGC	chr11:2151517-2151744(-)$1	227	143	147	11.9999
UGGC	chr11:2152040-2152253(-)$1	213	18	22	11.9999
uggc	chr2:128949181-128949455(+)$1	274	57	61	11.9999
UGGC	chr11:2153494-2153698(-)$1	204	21	25	11.9999
UGGC	chr11:2153558-2153763(-)$1	205	2	6	11.9999
UGGC	chr11:2154738-2154944(-)$1	206	83	87	11.9999
UGGC	chr11:2150453-2150666(-)$1	213	20	24	11.9999
UGGC	chr20:4680649-4680967(+)$1	318	114	118	11.9999
UGGC	chr17:72765261-72765529(+)$1	268	80	84	11.9999
UGGC	chr11:2159440-2159646(-)$1	206	96	100	11.9999
UGGC	chr11:2159488-2159695(-)$1	207	10	14	11.9999
UGGC	chr16:90001034-90001292(+)$1	258	66	70	11.9999
UGGC	chr16:58741661-58741945(-)$1	284	59	63	11.9999
uggc	chr3:52288978-52289233(-)$1	255	122	126	11.9999
UGGC	chr22:29951022-29951282(-)$1	260	135	139	11.9999
UGGC	chr11:8707168-8707373(+)$1	205	177	181	11.9999
UGGC	chr16:2012087-2012295(-)$1	208	183	187	11.9999
UGGC	chr11:2159576-2159779(-)$1	203	94	98	11.9999
UGGC	chr11:2152083-2152286(-)$1	203	24	28	11.9999
UGGC	chr11:2150520-2150724(-)$1	204	78	82	11.9999
UGGC	chr9:34370422-34370700(-)$1	278	20	24	11.9999
UGGC	chr2:10536891-10537148(+)$1	257	82	86	11.9999
UGGC	chr22:42070795-42071068(-)$1	273	137	141	11.9999
UGGC	chr19:13064220-13064460(+)$1	240	57	61	11.9999
UGGC	chr11:2151354-2151580(-)$1	226	37	41	11.9999
UGGC	chr11:2160384-2160588(-)$1	204	40	44	11.9999
UGGC	chr11:2152115-2152320(-)$1	205	58	62	11.9999
UGGC	chr17:39847573-39847848(+)$1	275	36	40	11.9999
UGGC	chr2:207025213-207025424(+)$1	211	48	52	11.9999
UGGC	chr2:241511776-241512079(+)$1	303	3	7	11.9999
UGGC	chr18:34378311-34378640(-)$1	329	115	119	11.9999
UGGC	chr14:75601409-75601644(-)$1	235	3	7	11.9999
UGGC	chr11:2153955-2154160(-)$1	205	172	176	11.9999
UGGC	chr2:85823948-85824154(+)$1	206	94	98	11.9999
UGGC	chr16:2012095-2012302(-)$1	207	190	194	11.9999
UGGC	chr1:149857666-149857922(-)$1	256	51	55	11.9999
UGGC	chr16:2012807-2013010(-)$1	203	5	9	11.9999
UGGC	chr11:2150850-2151057(-)$1	207	99	103	11.9999
UGGC	chr8:29940333-29940548(-)$1	215	52	56	11.9999
UGGC	chr6:10982758-10983034(-)$1	276	137	141	11.9999
UGGC	chr12:123998023-123998313(-)$1	290	22	26	11.9999
UGGC	chr11:2153568-2153779(-)$1	211	18	22	11.9999
UGGC	chr1:92149310-92149514(-)$1	204	11	15	11.9999
UGGC	chr11:2152031-2152236(-)$1	205	1	5	11.9999
UGGC	chr11:2159386-2159590(-)$1	204	40	44	11.9999
UGGC	chr2:220414916-220415175(+)$1	259	178	182	11.9999
UGGC	chr6:52367450-52367708(-)$1	258	4	8	11.9999
UGGC	chr11:2156519-2156723(-)$1	204	16	20	11.9999
UGGC	chr11:2150581-2150790(-)$1	209	144	148	11.9999
UGGC	chr1:154179724-154180001(-)$1	277	159	163	11.9999
UGGC	chr11:2152138-2152342(-)$1	204	80	84	11.9999
UGGC	chr11:2153533-2153736(-)$1	203	8	12	11.9999
UGGC	chr11:2154222-2154425(-)$1	203	189	193	11.9999
UGGC	chr12:120635155-120635365(-)$1	210	1	5	11.9999
UGGC	chr8:99054788-99055009(-)$1	221	35	39	11.9999
UGGC	chr11:2160058-2160260(-)$1	202	189	193	11.9999
UGGC	chr12:120638492-120638712(-)$1	220	101	105	11.9999
UGGC	chr14:75601444-75601662(-)$1	218	21	25	11.9999
UGGC	chr11:2160479-2160702(-)$1	223	43	47	11.9999
UGGC	chr11:2152142-2152345(-)$1	203	83	87	11.9999
UGGC	chr8:143817702-143817975(+)$1	273	71	75	11.9999
UGGC	chr11:2156617-2156824(-)$1	207	10	14	11.9999
UGGC	chr11:2154648-2154853(-)$1	205	30	34	11.9999
UGGC	chr11:2154131-2154336(-)$1	205	100	104	11.9999
UGGC	chr16:2013049-2013251(-)$1	202	171	175	11.9999
UGGC	chr11:2153474-2153677(-)$1	203	0	4	11.9999
UGGC	chr11:2154156-2154361(-)$1	205	125	129	11.9999
UGGC	chr20:48808834-48809073(+)$1	239	118	122	11.9999
UGGC	chr11:2150537-2150741(-)$1	204	95	99	11.9999
UGGC	chr11:2156529-2156730(-)$1	201	23	27	11.9999
UGGC	chr11:2154730-2154938(-)$1	208	77	81	11.9999
UGGC	chr12:120638434-120638653(-)$1	219	42	46	11.9999
uggc	chr3:52288874-52289141(-)$1	267	30	34	11.9999
UGGC	chr3:53259769-53260037(-)$1	268	91	95	11.9999
UGGC	chr11:2150626-2150840(-)$1	214	20	24	11.9999
UGGC	chr11:2159547-2159770(-)$1	223	85	89	11.9999
UGGC	chr12:111157688-111157960(-)$1	272	38	42	11.9999

#otherMatches

#Struct PSSM
iiii	chr17:36884285-36884557(+)$1	272	25	29	11.9999
eeeb	chr11:2159370-2159573(-)$1	203	23	27	11.9999
!ccc	chr11:2154077-2154283(-)$1	206	47	51	11.9999
FFFF	chr11:2156516-2156719(-)$1	203	12	16	11.9999
tccc	chr11:2154097-2154301(-)$1	204	65	69	11.9999
KKBB	chr12:123997898-123998223(-)$1	325	40	44	11.9999
DDDD	chr16:89999776-90000050(+)$1	274	12	16	11.9999
====	chr11:2151517-2151744(-)$1	227	143	147	11.9999
dd:G	chr11:2152040-2152253(-)$1	213	18	22	11.9999
gggg	chr2:128949181-128949455(+)$1	274	57	61	11.9999
tttt	chr11:2153494-2153698(-)$1	204	21	25	11.9999
::ee	chr11:2153558-2153763(-)$1	205	2	6	11.9999
[bbc	chr11:2154738-2154944(-)$1	206	83	87	11.9999
iiii	chr11:2150453-2150666(-)$1	213	20	24	11.9999
eeee	chr20:4680649-4680967(+)$1	318	114	118	11.9999
DDDB	chr17:72765261-72765529(+)$1	268	80	84	11.9999
dddd	chr11:2159440-2159646(-)$1	206	96	100	11.9999
FFFF	chr11:2159488-2159695(-)$1	207	10	14	11.9999
====	chr16:90001034-90001292(+)$1	258	66	70	11.9999
[ccc	chr16:58741661-58741945(-)$1	284	59	63	11.9999
oooo	chr3:52288978-52289233(-)$1	255	122	126	11.9999
fffc	chr22:29951022-29951282(-)$1	260	135	139	11.9999
ffff	chr11:8707168-8707373(+)$1	205	177	181	11.9999
eee:	chr16:2012087-2012295(-)$1	208	183	187	11.9999
[ccc	chr11:2159576-2159779(-)$1	203	94	98	11.9999
ddll	chr11:2152083-2152286(-)$1	203	24	28	11.9999
iiii	chr11:2150520-2150724(-)$1	204	78	82	11.9999
hhhh	chr9:34370422-34370700(-)$1	278	20	24	11.9999
bccc	chr2:10536891-10537148(+)$1	257	82	86	11.9999
ffff	chr22:42070795-42071068(-)$1	273	137	141	11.9999
hccc	chr19:13064220-13064460(+)$1	240	57	61	11.9999
c===	chr11:2151354-2151580(-)$1	226	37	41	11.9999
mccc	chr11:2160384-2160588(-)$1	204	40	44	11.9999
ddll	chr11:2152115-2152320(-)$1	205	58	62	11.9999
e]cc	chr17:39847573-39847848(+)$1	275	36	40	11.9999
!!bb	chr2:207025213-207025424(+)$1	211	48	52	11.9999
IIII	chr2:241511776-241512079(+)$1	303	3	7	11.9999
#ddd	chr18:34378311-34378640(-)$1	329	115	119	11.9999
::ff	chr14:75601409-75601644(-)$1	235	3	7	11.9999
FFF:	chr11:2153955-2154160(-)$1	205	172	176	11.9999
bboo	chr2:85823948-85824154(+)$1	206	94	98	11.9999
HHHY	chr16:2012095-2012302(-)$1	207	190	194	11.9999
]ccc	chr1:149857666-149857922(-)$1	256	51	55	11.9999
gggg	chr16:2012807-2013010(-)$1	203	5	9	11.9999
ccc[	chr11:2150850-2151057(-)$1	207	99	103	11.9999
ccee	chr8:29940333-29940548(-)$1	215	52	56	11.9999
eeee	chr6:10982758-10983034(-)$1	276	137	141	11.9999
:DDD	chr12:123998023-123998313(-)$1	290	22	26	11.9999
:::G	chr11:2153568-2153779(-)$1	211	18	22	11.9999
NCCC	chr1:92149310-92149514(-)$1	204	11	15	11.9999
::dd	chr11:2152031-2152236(-)$1	205	1	5	11.9999
eeee	chr11:2159386-2159590(-)$1	204	40	44	11.9999
$ccc	chr2:220414916-220415175(+)$1	259	178	182	11.9999
::::	chr6:52367450-52367708(-)$1	258	4	8	11.9999
:ccc	chr11:2156519-2156723(-)$1	204	16	20	11.9999
iiii	chr11:2150581-2150790(-)$1	209	144	148	11.9999
ffff	chr1:154179724-154180001(-)$1	277	159	163	11.9999
ddll	chr11:2152138-2152342(-)$1	204	80	84	11.9999
DDDD	chr11:2153533-2153736(-)$1	203	8	12	11.9999
}CCC	chr11:2154222-2154425(-)$1	203	189	193	11.9999
HHHH	chr12:120635155-120635365(-)$1	210	1	5	11.9999
FFCC	chr8:99054788-99055009(-)$1	221	35	39	11.9999
C}BB	chr11:2160058-2160260(-)$1	202	189	193	11.9999
:FFF	chr12:120638492-120638712(-)$1	220	101	105	11.9999
::ff	chr14:75601444-75601662(-)$1	218	21	25	11.9999
:ccc	chr11:2160479-2160702(-)$1	223	43	47	11.9999
ddll	chr11:2152142-2152345(-)$1	203	83	87	11.9999
:CCC	chr8:143817702-143817975(+)$1	273	71	75	11.9999
"ddd	chr11:2156617-2156824(-)$1	207	10	14	11.9999
GGGG	chr11:2154648-2154853(-)$1	205	30	34	11.9999
tccc	chr11:2154131-2154336(-)$1	205	100	104	11.9999
DDDD	chr16:2013049-2013251(-)$1	202	171	175	11.9999
EEEE	chr11:2153474-2153677(-)$1	203	0	4	11.9999
!ccc	chr11:2154156-2154361(-)$1	205	125	129	11.9999
CYYC	chr20:48808834-48809073(+)$1	239	118	122	11.9999
iiii	chr11:2150537-2150741(-)$1	204	95	99	11.9999
:ccc	chr11:2156529-2156730(-)$1	201	23	27	11.9999
[bbc	chr11:2154730-2154938(-)$1	208	77	81	11.9999
EFFF	chr12:120638434-120638653(-)$1	219	42	46	11.9999
HHHH	chr3:52288874-52289141(-)$1	267	30	34	11.9999
gggg	chr3:53259769-53260037(-)$1	268	91	95	11.9999
ddee	chr11:2150626-2150840(-)$1	214	20	24	11.9999
[ccc	chr11:2159547-2159770(-)$1	223	85	89	11.9999
:eee	chr12:111157688-111157960(-)$1	272	38	42	11.9999

#DB
((((	chr17:36884285-36884557(+)$1	1	25	29	11.9999
((((	chr11:2159370-2159573(-)$1	1	23	27	11.9999
.(((	chr11:2154077-2154283(-)$1	1	47	51	11.9999
((((	chr11:2156516-2156719(-)$1	1	12	16	11.9999
.)))	chr11:2154097-2154301(-)$1	1	65	69	11.9999
..((	chr12:123997898-123998223(-)$1	1	40	44	11.9999
((((	chr16:89999776-90000050(+)$1	1	12	16	11.9999
((((	chr11:2151517-2151744(-)$1	1	143	147	11.9999
)).(	chr11:2152040-2152253(-)$1	1	18	22	11.9999
))))	chr2:128949181-128949455(+)$1	1	57	61	11.9999
....	chr11:2153494-2153698(-)$1	1	21	25	11.9999
..((	chr11:2153558-2153763(-)$1	1	2	6	11.9999
.(((	chr11:2154738-2154944(-)$1	1	83	87	11.9999
))))	chr11:2150453-2150666(-)$1	1	20	24	11.9999
))))	chr20:4680649-4680967(+)$1	1	114	118	11.9999
((((	chr17:72765261-72765529(+)$1	1	80	84	11.9999
))))	chr11:2159440-2159646(-)$1	1	96	100	11.9999
((((	chr11:2159488-2159695(-)$1	1	10	14	11.9999
))))	chr16:90001034-90001292(+)$1	1	66	70	11.9999
.(((	chr16:58741661-58741945(-)$1	1	59	63	11.9999
....	chr3:52288978-52289233(-)$1	1	122	126	11.9999
))))	chr22:29951022-29951282(-)$1	1	135	139	11.9999
((((	chr11:8707168-8707373(+)$1	1	177	181	11.9999
))).	chr16:2012087-2012295(-)$1	1	183	187	11.9999
.(((	chr11:2159576-2159779(-)$1	1	94	98	11.9999
((..	chr11:2152083-2152286(-)$1	1	24	28	11.9999
))))	chr11:2150520-2150724(-)$1	1	78	82	11.9999
((((	chr9:34370422-34370700(-)$1	1	20	24	11.9999
))))	chr2:10536891-10537148(+)$1	1	82	86	11.9999
((((	chr22:42070795-42071068(-)$1	1	137	141	11.9999
))))	chr19:13064220-13064460(+)$1	1	57	61	11.9999
((((	chr11:2151354-2151580(-)$1	1	37	41	11.9999
.)))	chr11:2160384-2160588(-)$1	1	40	44	11.9999
((..	chr11:2152115-2152320(-)$1	1	58	62	11.9999
).))	chr17:39847573-39847848(+)$1	1	36	40	11.9999
..((	chr2:207025213-207025424(+)$1	1	48	52	11.9999
((((	chr2:241511776-241512079(+)$1	1	3	7	11.9999
.(((	chr18:34378311-34378640(-)$1	1	115	119	11.9999
..((	chr14:75601409-75601644(-)$1	1	3	7	11.9999
))).	chr11:2153955-2154160(-)$1	1	172	176	11.9999
((..	chr2:85823948-85824154(+)$1	1	94	98	11.9999
))).	chr16:2012095-2012302(-)$1	1	190	194	11.9999
.)))	chr1:149857666-149857922(-)$1	1	51	55	11.9999
((((	chr16:2012807-2013010(-)$1	1	5	9	11.9999
(((.	chr11:2150850-2151057(-)$1	1	99	103	11.9999
))))	chr8:29940333-29940548(-)$1	1	52	56	11.9999
))))	chr6:10982758-10983034(-)$1	1	137	141	11.9999
.(((	chr12:123998023-123998313(-)$1	1	22	26	11.9999
...(	chr11:2153568-2153779(-)$1	1	18	22	11.9999
.(((	chr1:92149310-92149514(-)$1	1	11	15	11.9999
..((	chr11:2152031-2152236(-)$1	1	1	5	11.9999
))))	chr11:2159386-2159590(-)$1	1	40	44	11.9999
.(((	chr2:220414916-220415175(+)$1	1	178	182	11.9999
....	chr6:52367450-52367708(-)$1	1	4	8	11.9999
.(((	chr11:2156519-2156723(-)$1	1	16	20	11.9999
))))	chr11:2150581-2150790(-)$1	1	144	148	11.9999
))))	chr1:154179724-154180001(-)$1	1	159	163	11.9999
((..	chr11:2152138-2152342(-)$1	1	80	84	11.9999
((((	chr11:2153533-2153736(-)$1	1	8	12	11.9999
.)))	chr11:2154222-2154425(-)$1	1	189	193	11.9999
((((	chr12:120635155-120635365(-)$1	1	1	5	11.9999
((((	chr8:99054788-99055009(-)$1	1	35	39	11.9999
).))	chr11:2160058-2160260(-)$1	1	189	193	11.9999
.(((	chr12:120638492-120638712(-)$1	1	101	105	11.9999
..((	chr14:75601444-75601662(-)$1	1	21	25	11.9999
.(((	chr11:2160479-2160702(-)$1	1	43	47	11.9999
((..	chr11:2152142-2152345(-)$1	1	83	87	11.9999
.(((	chr8:143817702-143817975(+)$1	1	71	75	11.9999
.(((	chr11:2156617-2156824(-)$1	1	10	14	11.9999
((((	chr11:2154648-2154853(-)$1	1	30	34	11.9999
.)))	chr11:2154131-2154336(-)$1	1	100	104	11.9999
))))	chr16:2013049-2013251(-)$1	1	171	175	11.9999
((((	chr11:2153474-2153677(-)$1	1	0	4	11.9999
.(((	chr11:2154156-2154361(-)$1	1	125	129	11.9999
)..)	chr20:48808834-48809073(+)$1	1	118	122	11.9999
))))	chr11:2150537-2150741(-)$1	1	95	99	11.9999
.(((	chr11:2156529-2156730(-)$1	1	23	27	11.9999
.(((	chr11:2154730-2154938(-)$1	1	77	81	11.9999
((((	chr12:120638434-120638653(-)$1	1	42	46	11.9999
((((	chr3:52288874-52289141(-)$1	1	30	34	11.9999
((((	chr3:53259769-53260037(-)$1	1	91	95	11.9999
))((	chr11:2150626-2150840(-)$1	1	20	24	11.9999
.(((	chr11:2159547-2159770(-)$1	1	85	89	11.9999
.(((	chr12:111157688-111157960(-)$1	1	38	42	11.9999

#PSSM
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
C : 0.96	c : 0.03	

#score	1007.9999999999998
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_UTR_m1_run2.nuc.txt

#NT
CCUGG	chr15:75871515-75871788(-)$1	273	160	165	15.0000
CCUGG	chr7:72992532-72992817(-)$1	285	255	260	15.0000
CCUGG	chr5:176869577-176869884(+)$1	307	152	157	15.0000
CCUGG	chr1:38259686-38259943(+)$1	257	84	89	15.0000
CCUGG	chr17:43183443-43183724(+)$1	281	209	214	15.0000
CCUGG	chr11:2152117-2152320(-)$1	203	143	148	15.0000
CCUGG	chr11:2153579-2153783(-)$1	204	109	114	15.0000
CCUGG	chr19:5152173-5152433(+)$1	260	20	25	15.0000
CCUGG	chr14:105185777-105186026(+)$1	249	0	5	15.0000
ccugg	chr15:75953268-75953549(+)$1	281	121	126	15.0000
CCUGG	chr17:41844210-41844417(-)$1	207	98	103	15.0000
CCUGG	chr3:52328457-52328727(+)$1	270	23	28	15.0000
CCUGG	chr11:2152064-2152269(-)$1	205	92	97	15.0000
CCUGG	chr17:78393212-78393494(+)$1	282	74	79	15.0000
CCUGG	chr18:56066314-56066634(+)$1	320	96	101	15.0000
CCUGG	chr1:6245690-6245948(-)$1	258	63	68	15.0000
CCUGG	chr22:42334910-42335164(-)$1	254	89	94	15.0000
CCUGG	chr17:80416491-80416779(+)$1	288	244	249	15.0000
CCUGG	chr16:18801295-18801587(-)$1	292	73	78	15.0000
CCUGG	chr11:2153588-2153794(-)$1	206	120	125	15.0000
CCUGG	chr17:41844217-41844444(-)$1	227	125	130	15.0000
CCUGG	chr11:2153990-2154197(-)$1	207	89	94	15.0000
CCUGG	chr19:59067000-59067253(-)$1	253	96	101	15.0000
CCUGG	chr17:76793728-76793988(-)$1	260	30	35	15.0000
CCUGG	chr9:139838664-139838991(-)$1	327	102	107	15.0000
CCUGG	chr6:168364538-168364823(+)$1	285	33	38	15.0000
CCUGG	chr11:2153971-2154176(-)$1	205	68	73	15.0000
CCUGG	chr17:79859254-79859509(-)$1	255	24	29	15.0000
CCUGG	chr11:115158094-115158365(-)$1	271	80	85	15.0000
CCUGG	chr11:2152144-2152357(-)$1	213	180	185	15.0000
CCUGG	chr11:2153909-2154128(-)$1	219	20	25	15.0000
CCUGG	chr2:201676870-201677105(+)$1	235	124	129	15.0000
CCUGG	chr16:24857290-24857542(+)$1	252	123	128	15.0000
CCUGG	chr15:93426400-93426717(+)$1	317	189	194	15.0000
CCUGG	chr2:102793811-102794065(+)$1	254	93	98	15.0000
ccugg	chr11:75190291-75190527(-)$1	236	37	42	15.0000
CCUGG	chr19:46268326-46268645(-)$1	319	3	8	15.0000
CCUGG	chr12:123998121-123998386(-)$1	265	163	168	15.0000
CCUGG	chr13:113539922-113540168(+)$1	246	106	111	15.0000
CCUGG	chr8:42911686-42911964(+)$1	278	39	44	15.0000
CCUGG	chr13:113539189-113539458(+)$1	269	46	51	15.0000
ccugg	chr5:80598087-80598391(+)$1	304	9	14	15.0000
CCUGG	chr11:2153462-2153675(-)$1	213	1	6	15.0000
CCUGG	chr19:50818996-50819266(-)$1	270	96	101	15.0000
CCUGG	chr8:66754044-66754290(-)$1	246	125	130	15.0000
CCUGG	chr20:20371605-20371848(-)$1	243	186	191	15.0000
CCUGG	chr2:233415044-233415328(-)$1	284	157	162	15.0000
CCUGG	chr1:24126843-24127239(-)$1	396	129	134	15.0000
CCUGG	chr10:20105072-20105329(+)$1	257	127	132	15.0000
CCUGG	chr5:73935793-73936044(-)$1	251	232	237	15.0000
CCUGG	chr20:20371648-20371915(-)$1	267	253	258	15.0000
CCUGG	chrX:153672882-153673112(+)$1	230	3	8	15.0000
CCUGG	chr11:2152080-2152283(-)$1	203	106	111	15.0000
CCUGG	chr14:74754793-74755056(-)$1	263	120	125	15.0000
CCUGG	chr1:91966598-91966849(+)$1	251	234	239	15.0000
CCUGG	chr10:102761854-102762081(+)$1	227	17	22	15.0000

#otherMatches

#Struct PSSM
dd:cc	chr9:139938325-139938582(-)$1	257	72	77	15.0000
b[fff	chr15:75871515-75871788(-)$1	273	160	165	15.0000
eeeee	chr7:72992532-72992817(-)$1	285	255	260	15.0000
e:eee	chr5:176869577-176869884(+)$1	307	152	157	15.0000
ggggg	chr1:38259686-38259943(+)$1	257	84	89	15.0000
ddd!!	chr17:43183443-43183724(+)$1	281	209	214	15.0000
eee==	chr11:2152117-2152320(-)$1	203	143	148	15.0000
tttte	chr11:2153579-2153783(-)$1	204	109	114	15.0000
leeee	chr19:5152173-5152433(+)$1	260	20	25	15.0000
DDDD:	chr14:105185777-105186026(+)$1	249	0	5	15.0000
glllg	chr15:75953268-75953549(+)$1	281	121	126	15.0000
mmmme	chr17:41844210-41844417(-)$1	207	98	103	15.0000
dddda	chr3:52328457-52328727(+)$1	270	23	28	15.0000
eee==	chr11:2152064-2152269(-)$1	205	92	97	15.0000
fff]g	chr17:78393212-78393494(+)$1	282	74	79	15.0000
LEEEE	chr18:56066314-56066634(+)$1	320	96	101	15.0000
eeeee	chr1:6245690-6245948(-)$1	258	63	68	15.0000
nnnbb	chr22:42334910-42335164(-)$1	254	89	94	15.0000
444hh	chr17:80416491-80416779(+)$1	288	244	249	15.0000
GGG:d	chr16:18801295-18801587(-)$1	292	73	78	15.0000
tttte	chr11:2153588-2153794(-)$1	206	120	125	15.0000
mmmme	chr17:41844217-41844444(-)$1	227	125	130	15.0000
$eeee	chr11:2153990-2154197(-)$1	207	89	94	15.0000
hhhhh	chr19:59067000-59067253(-)$1	253	96	101	15.0000
fffff	chr17:76793728-76793988(-)$1	260	30	35	15.0000
fff]b	chr9:139838664-139838991(-)$1	327	102	107	15.0000
CCCKK	chr6:168364538-168364823(+)$1	285	33	38	15.0000
$eeee	chr11:2153971-2154176(-)$1	205	68	73	15.0000
GA{DD	chr17:79859254-79859509(-)$1	255	24	29	15.0000
c====	chr11:115158094-115158365(-)$1	271	80	85	15.0000
f::FF	chr11:2152144-2152357(-)$1	213	180	185	15.0000
lllee	chr11:2153909-2154128(-)$1	219	20	25	15.0000
ddd[b	chr2:201676870-201677105(+)$1	235	124	129	15.0000
ffddd	chr16:24857290-24857542(+)$1	252	123	128	15.0000
gggff	chr15:93426400-93426717(+)$1	317	189	194	15.0000
dddd[	chr2:102793811-102794065(+)$1	254	93	98	15.0000
GGGGG	chr11:75190291-75190527(-)$1	236	37	42	15.0000
FFFFF	chr19:46268326-46268645(-)$1	319	3	8	15.0000
ii]cc	chr12:123998121-123998386(-)$1	265	163	168	15.0000
nnnee	chr13:113539922-113540168(+)$1	246	106	111	15.0000
ddccc	chr8:42911686-42911964(+)$1	278	39	44	15.0000
b[eee	chr13:113539189-113539458(+)$1	269	46	51	15.0000
d[bbn	chr5:80598087-80598391(+)$1	304	9	14	15.0000
CCCBB	chr11:2153462-2153675(-)$1	213	1	6	15.0000
]eeee	chr19:50818996-50819266(-)$1	270	96	101	15.0000
ddddd	chr8:66754044-66754290(-)$1	246	125	130	15.0000
yyyyb	chr20:20371605-20371848(-)$1	243	186	191	15.0000
YEEEE	chr2:233415044-233415328(-)$1	284	157	162	15.0000
eeeee	chr1:24126843-24127239(-)$1	396	129	134	15.0000
KHHHH	chr10:20105072-20105329(+)$1	257	127	132	15.0000
JJJJJ	chr5:73935793-73936044(-)$1	251	232	237	15.0000
ddd]c	chr20:20371648-20371915(-)$1	267	253	258	15.0000
HHHHH	chrX:153672882-153673112(+)$1	230	3	8	15.0000
eee==	chr11:2152080-2152283(-)$1	203	106	111	15.0000
ccc]a	chr14:74754793-74755056(-)$1	263	120	125	15.0000
mmmcc	chr1:91966598-91966849(+)$1	251	234	239	15.0000
eeeee	chr10:102761854-102762081(+)$1	227	17	22	15.0000

#DB
)).((	chr9:139938325-139938582(-)$1	1	72	77	15.0000
(.(((	chr15:75871515-75871788(-)$1	1	160	165	15.0000
)))))	chr7:72992532-72992817(-)$1	1	255	260	15.0000
).(((	chr5:176869577-176869884(+)$1	1	152	157	15.0000
)))))	chr1:38259686-38259943(+)$1	1	84	89	15.0000
(((..	chr17:43183443-43183724(+)$1	1	209	214	15.0000
(((((	chr11:2152117-2152320(-)$1	1	143	148	15.0000
....)	chr11:2153579-2153783(-)$1	1	109	114	15.0000
.))))	chr19:5152173-5152433(+)$1	1	20	25	15.0000
((((.	chr14:105185777-105186026(+)$1	1	0	5	15.0000
(...)	chr15:75953268-75953549(+)$1	1	121	126	15.0000
....)	chr17:41844210-41844417(-)$1	1	98	103	15.0000
(((((	chr3:52328457-52328727(+)$1	1	23	28	15.0000
(((((	chr11:2152064-2152269(-)$1	1	92	97	15.0000
))).)	chr17:78393212-78393494(+)$1	1	74	79	15.0000
.((((	chr18:56066314-56066634(+)$1	1	96	101	15.0000
)))))	chr1:6245690-6245948(-)$1	1	63	68	15.0000
...))	chr22:42334910-42335164(-)$1	1	89	94	15.0000
...))	chr17:80416491-80416779(+)$1	1	244	249	15.0000
(((.(	chr16:18801295-18801587(-)$1	1	73	78	15.0000
....)	chr11:2153588-2153794(-)$1	1	120	125	15.0000
....)	chr17:41844217-41844444(-)$1	1	125	130	15.0000
.((((	chr11:2153990-2154197(-)$1	1	89	94	15.0000
(((((	chr19:59067000-59067253(-)$1	1	96	101	15.0000
(((((	chr17:76793728-76793988(-)$1	1	30	35	15.0000
))).)	chr9:139838664-139838991(-)$1	1	102	107	15.0000
(((..	chr6:168364538-168364823(+)$1	1	33	38	15.0000
.((((	chr11:2153971-2154176(-)$1	1	68	73	15.0000
((.((	chr17:79859254-79859509(-)$1	1	24	29	15.0000
(((((	chr11:115158094-115158365(-)$1	1	80	85	15.0000
)..))	chr11:2152144-2152357(-)$1	1	180	185	15.0000
...))	chr11:2153909-2154128(-)$1	1	20	25	15.0000
(((.(	chr2:201676870-201677105(+)$1	1	124	129	15.0000
)))))	chr16:24857290-24857542(+)$1	1	123	128	15.0000
(((((	chr15:93426400-93426717(+)$1	1	189	194	15.0000
((((.	chr2:102793811-102794065(+)$1	1	93	98	15.0000
(((((	chr11:75190291-75190527(-)$1	1	37	42	15.0000
(((((	chr19:46268326-46268645(-)$1	1	3	8	15.0000
)).))	chr12:123998121-123998386(-)$1	1	163	168	15.0000
...))	chr13:113539922-113540168(+)$1	1	106	111	15.0000
))(((	chr8:42911686-42911964(+)$1	1	39	44	15.0000
(.(((	chr13:113539189-113539458(+)$1	1	46	51	15.0000
(.((.	chr5:80598087-80598391(+)$1	1	9	14	15.0000
(((((	chr11:2153462-2153675(-)$1	1	1	6	15.0000
.))))	chr19:50818996-50819266(-)$1	1	96	101	15.0000
)))))	chr8:66754044-66754290(-)$1	1	125	130	15.0000
....)	chr20:20371605-20371848(-)$1	1	186	191	15.0000
.))))	chr2:233415044-233415328(-)$1	1	157	162	15.0000
(((((	chr1:24126843-24127239(-)$1	1	129	134	15.0000
.((((	chr10:20105072-20105329(+)$1	1	127	132	15.0000
)))))	chr5:73935793-73936044(-)$1	1	232	237	15.0000
))).)	chr20:20371648-20371915(-)$1	1	253	258	15.0000
(((((	chrX:153672882-153673112(+)$1	1	3	8	15.0000
(((((	chr11:2152080-2152283(-)$1	1	106	111	15.0000
))).)	chr14:74754793-74755056(-)$1	1	120	125	15.0000
...))	chr1:91966598-91966849(+)$1	1	234	239	15.0000
(((((	chr10:102761854-102762081(+)$1	1	17	22	15.0000

#PSSM
C : 0.94	c : 0.05	
C : 0.94	c : 0.05	
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	

#score	855.0000000000005
#seq	57
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_UTR_m2_run2.nuc.txt

#NT
AAUAA	chr5:180683673-180683888(+)$1	215	193	198	14.9999
AAUAA	chr14:23795213-23795437(+)$1	224	133	138	14.9999
AAUAA	chr4:48862854-48863119(+)$1	265	249	254	14.9999
AAUAA	chr11:108018026-108018316(+)$1	290	262	267	14.9999
AAUAA	chr8:101932505-101932773(-)$1	268	217	222	14.9999
AAUAA	chr14:24759760-24760131(-)$1	371	303	308	14.9999
AAUAA	chr3:23961030-23961288(+)$1	258	99	104	14.9999
AAUAA	chr1:40538022-40538350(+)$1	328	238	243	14.9999
AAUAA	chr3:113530642-113530881(+)$1	239	139	144	14.9999
AAUAA	chr17:39847694-39847941(+)$1	247	181	186	14.9999
AAUAA	chr2:162267923-162268218(+)$1	295	283	288	14.9999
AAUAA	chr7:42956949-42957224(-)$1	275	196	201	14.9999
AAUAA	chr2:62095575-62095853(-)$1	278	265	270	14.9999
AAUAA	chr14:24607944-24608235(+)$1	291	203	208	14.9999
AAUAA	chr11:18428819-18429031(+)$1	212	156	161	14.9999
AAUAA	chr16:66836727-66837015(-)$1	288	19	24	14.9999
AAUAA	chr12:51453973-51454248(+)$1	275	157	162	14.9999
AAUAA	chr9:37436767-37437057(+)$1	290	205	210	14.9999
AAUAA	chr20:32868120-32868364(-)$1	244	224	229	14.9999
AAUAA	chr11:18428875-18429098(+)$1	223	100	105	14.9999
AAUAA	chr12:51637292-51637600(+)$1	308	228	233	14.9999
AAUAA	chr5:10264923-10265191(+)$1	268	88	93	14.9999
AAUAA	chr10:85912666-85912921(+)$1	255	180	185	14.9999
AAUAA	chr2:172848254-172848553(+)$1	299	264	269	14.9999
AAUAA	chrX:154467439-154467731(+)$1	292	182	187	14.9999
AAUAA	chrX:40510555-40510844(-)$1	289	12	17	14.9999
AAUAA	chr17:38974351-38974675(-)$1	324	164	169	14.9999
aauaa	chr4:110745649-110745890(+)$1	241	175	180	14.9999
AAUAA	chr1:182856597-182856844(+)$1	247	226	231	14.9999
AAUAA	chr10:99218108-99218372(-)$1	264	112	117	14.9999
aauaa	chr19:2273247-2273512(+)$1	265	58	63	14.9999
AAUAA	chr6:150045391-150045697(-)$1	306	216	221	14.9999
AAUAA	chr3:23961088-23961361(+)$1	273	41	46	14.9999
AAUAA	chrX:153609673-153609920(+)$1	247	186	191	14.9999
AAUAA	chr7:75695706-75695981(+)$1	275	179	184	14.9999
AAUAA	chr14:104378783-104379098(-)$1	315	1	6	14.9999
AAUAA	chr1:155882869-155883120(-)$1	251	84	89	14.9999
AAUAA	chr16:21994607-21994849(+)$1	242	42	47	14.9999
AAUAA	chr22:41221982-41222241(-)$1	259	77	82	14.9999
AAUAA	chr12:54678430-54678688(+)$1	258	215	220	14.9999
AAUAA	chr10:121334897-121335169(-)$1	272	226	231	14.9999
AAUAA	chr2:63834000-63834276(+)$1	276	189	194	14.9999
AAUAA	chr10:73576679-73576941(-)$1	262	246	251	14.9999
AAUAA	chr10:70864269-70864527(+)$1	258	23	28	14.9999
AAUAA	chr12:4414184-4414486(+)$1	302	234	239	14.9999

#otherMatches

#Struct PSSM
:::::	chr7:158424018-158424430(-)$1	412	159	164	14.9999
???DD	chr5:180683673-180683888(+)$1	215	193	198	14.9999
eeeem	chr14:23795213-23795437(+)$1	224	133	138	14.9999
occc2	chr4:48862854-48863119(+)$1	265	249	254	14.9999
ppppf	chr11:108018026-108018316(+)$1	290	262	267	14.9999
eee[b	chr8:101932505-101932773(-)$1	268	217	222	14.9999
::fff	chr14:24759760-24760131(-)$1	371	303	308	14.9999
cc]hh	chr3:23961030-23961288(+)$1	258	99	104	14.9999
EE:::	chr1:40538022-40538350(+)$1	328	238	243	14.9999
::FFF	chr3:113530642-113530881(+)$1	239	139	144	14.9999
hhhh:	chr17:39847694-39847941(+)$1	247	181	186	14.9999
ggg::	chr2:162267923-162268218(+)$1	295	283	288	14.9999
::::=	chr7:42956949-42957224(-)$1	275	196	201	14.9999
ff:::	chr2:62095575-62095853(-)$1	278	265	270	14.9999
:::::	chr14:24607944-24608235(+)$1	291	203	208	14.9999
:::::	chr11:18428819-18429031(+)$1	212	156	161	14.9999
:::::	chr16:66836727-66837015(-)$1	288	19	24	14.9999
ttccc	chr12:51453973-51454248(+)$1	275	157	162	14.9999
66666	chr9:37436767-37437057(+)$1	290	205	210	14.9999
GG___	chr20:32868120-32868364(-)$1	244	224	229	14.9999
%ffff	chr11:18428875-18429098(+)$1	223	100	105	14.9999
qqqqq	chr12:51637292-51637600(+)$1	308	228	233	14.9999
ppppp	chr5:10264923-10265191(+)$1	268	88	93	14.9999
ppppp	chr10:85912666-85912921(+)$1	255	180	185	14.9999
:::::	chr2:172848254-172848553(+)$1	299	264	269	14.9999
eeee[	chrX:154467439-154467731(+)$1	292	182	187	14.9999
HHHHH	chrX:40510555-40510844(-)$1	289	12	17	14.9999
ff[dd	chr17:38974351-38974675(-)$1	324	164	169	14.9999
""hhh	chr4:110745649-110745890(+)$1	241	175	180	14.9999
gg]dd	chr1:182856597-182856844(+)$1	247	226	231	14.9999
::ggg	chr10:99218108-99218372(-)$1	264	112	117	14.9999
hhhhh	chr19:2273247-2273512(+)$1	265	58	63	14.9999
'''''	chr6:150045391-150045697(-)$1	306	216	221	14.9999
cmmmm	chr3:23961088-23961361(+)$1	273	41	46	14.9999
ee:::	chrX:153609673-153609920(+)$1	247	186	191	14.9999
!ccc[	chr7:75695706-75695981(+)$1	275	179	184	14.9999
:::::	chr14:104378783-104379098(-)$1	315	1	6	14.9999
::::f	chr1:155882869-155883120(-)$1	251	84	89	14.9999
d:::g	chr16:21994607-21994849(+)$1	242	42	47	14.9999
:::::	chr22:41221982-41222241(-)$1	259	77	82	14.9999
EEZZZ	chr12:54678430-54678688(+)$1	258	215	220	14.9999
:::::	chr10:121334897-121335169(-)$1	272	226	231	14.9999
^^^^^	chr2:63834000-63834276(+)$1	276	189	194	14.9999
nnnnn	chr10:73576679-73576941(-)$1	262	246	251	14.9999
:::::	chr10:70864269-70864527(+)$1	258	23	28	14.9999
@@@@@	chr12:4414184-4414486(+)$1	302	234	239	14.9999

#DB
.....	chr7:158424018-158424430(-)$1	1	159	164	14.9999
...))	chr5:180683673-180683888(+)$1	1	193	198	14.9999
((((.	chr14:23795213-23795437(+)$1	1	133	138	14.9999
.))).	chr4:48862854-48863119(+)$1	1	249	254	14.9999
....)	chr11:108018026-108018316(+)$1	1	262	267	14.9999
(((.(	chr8:101932505-101932773(-)$1	1	217	222	14.9999
..(((	chr14:24759760-24760131(-)$1	1	303	308	14.9999
)).))	chr3:23961030-23961288(+)$1	1	99	104	14.9999
))...	chr1:40538022-40538350(+)$1	1	238	243	14.9999
..(((	chr3:113530642-113530881(+)$1	1	139	144	14.9999
)))).	chr17:39847694-39847941(+)$1	1	181	186	14.9999
)))..	chr2:162267923-162268218(+)$1	1	283	288	14.9999
....(	chr7:42956949-42957224(-)$1	1	196	201	14.9999
))...	chr2:62095575-62095853(-)$1	1	265	270	14.9999
.....	chr14:24607944-24608235(+)$1	1	203	208	14.9999
.....	chr11:18428819-18429031(+)$1	1	156	161	14.9999
.....	chr16:66836727-66837015(-)$1	1	19	24	14.9999
..)))	chr12:51453973-51454248(+)$1	1	157	162	14.9999
.....	chr9:37436767-37437057(+)$1	1	205	210	14.9999
))...	chr20:32868120-32868364(-)$1	1	224	229	14.9999
.((((	chr11:18428875-18429098(+)$1	1	100	105	14.9999
.....	chr12:51637292-51637600(+)$1	1	228	233	14.9999
.....	chr5:10264923-10265191(+)$1	1	88	93	14.9999
.....	chr10:85912666-85912921(+)$1	1	180	185	14.9999
.....	chr2:172848254-172848553(+)$1	1	264	269	14.9999
((((.	chrX:154467439-154467731(+)$1	1	182	187	14.9999
(((((	chrX:40510555-40510844(-)$1	1	12	17	14.9999
((.((	chr17:38974351-38974675(-)$1	1	164	169	14.9999
..(((	chr4:110745649-110745890(+)$1	1	175	180	14.9999
)).))	chr1:182856597-182856844(+)$1	1	226	231	14.9999
..(((	chr10:99218108-99218372(-)$1	1	112	117	14.9999
(((((	chr19:2273247-2273512(+)$1	1	58	63	14.9999
.....	chr6:150045391-150045697(-)$1	1	216	221	14.9999
(....	chr3:23961088-23961361(+)$1	1	41	46	14.9999
))...	chrX:153609673-153609920(+)$1	1	186	191	14.9999
.(((.	chr7:75695706-75695981(+)$1	1	179	184	14.9999
.....	chr14:104378783-104379098(-)$1	1	1	6	14.9999
....(	chr1:155882869-155883120(-)$1	1	84	89	14.9999
)...(	chr16:21994607-21994849(+)$1	1	42	47	14.9999
.....	chr22:41221982-41222241(-)$1	1	77	82	14.9999
))...	chr12:54678430-54678688(+)$1	1	215	220	14.9999
.....	chr10:121334897-121335169(-)$1	1	226	231	14.9999
.....	chr2:63834000-63834276(+)$1	1	189	194	14.9999
.....	chr10:73576679-73576941(-)$1	1	246	251	14.9999
.....	chr10:70864269-70864527(+)$1	1	23	28	14.9999
.....	chr12:4414184-4414486(+)$1	1	234	239	14.9999

#PSSM
A : 0.95	a : 0.04	
A : 0.95	a : 0.04	
U : 0.95	u : 0.04	
A : 0.95	a : 0.04	
A : 0.95	a : 0.04	

#score	689.9999999999999
#seq	46
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_transcript_m1_run2.nuc.txt

#NT
GCCCCCUCCC	chr22:50714616-50714873(-)$1	257	30	40	22.5694
UCCCCAUCCC	chr6:107955525-107955789(+)$1	264	132	142	18.1250
accuccuccc	chr17:48745991-48746275(+)$1	284	15	25	17.7777
ccccccucca	chr22:47523873-47524127(+)$1	254	32	42	17.7083
GUCCCCUCCC	chr6:44095371-44095651(+)$1	280	130	140	19.1666
ucccccaccc	chr1:20812302-20812563(-)$1	261	11	21	18.6805
ACCGCCUCCC	chr11:2159926-2160130(-)$1	204	35	45	17.9861
GGCCCCUCCC	chr19:39436043-39436270(-)$1	227	77	87	18.5416
uccccuuccc	chr19:45323159-45323412(+)$1	253	100	110	18.2638
ACCCCCUACC	chr1:153779149-153779414(-)$1	265	159	169	17.5694
auccccuccc	chr3:197407703-197408004(-)$1	301	55	65	18.8194
GCCCCCUCUC	chr2:122287512-122287891(-)$1	379	176	186	17.8472
ccccgcuccc	chr19:17451393-17451652(+)$1	259	199	209	17.2916
guccccuccc	chr18:77671681-77671949(-)$1	268	13	23	19.1666
GCCCCCCCCC	chr17:27212870-27213137(-)$1	267	51	61	18.3333
ACCGCCUCCC	chr1:12654999-12655244(-)$1	245	124	134	17.9861
gcccccuccc	chr19:496414-496712(-)$1	298	18	28	22.5694
cccaccuccc	chr16:89974915-89975190(+)$1	275	16	26	17.7777
ucucccuccc	chr7:64141831-64142102(+)$1	271	127	137	18.2638
GCCCCCUCCC	chr19:56172526-56172777(+)$1	251	147	157	22.5694
acccccugcc	chr20:60560059-60560272(-)$1	213	187	197	17.5694
CCCCCCUCCA	chr19:45898776-45899074(-)$1	298	89	99	17.7083
ccccccuccc	chr17:73138492-73138800(-)$1	308	57	67	22.1527
ACCCCCUCCU	chr16:50583004-50583252(+)$1	248	206	216	17.6388
acccccaccc	chrX:129147646-129147871(+)$1	225	206	216	18.4027
AUccccuccc	chr17:4793338-4793601(+)$1	263	27	37	18.8194
cuccccuccC	chr15:56535305-56535578(-)$1	273	19	29	18.7499
CCCCCCGCCC	chr17:7751102-7751358(+)$1	256	35	45	17.9861
gcccccuccg	chr16:188255-188514(-)$1	259	22	32	17.9861
ccccccuccc	chr11:68831693-68832007(+)$1	314	57	67	22.1527
GCCCCCUUCC	chr2:74274132-74274394(+)$1	262	56	66	17.9861
UCCCCGUCCC	chr7:157602992-157603262(-)$1	270	20	30	18.0555
Guccccuccc	chr18:77672009-77672262(-)$1	253	78	88	19.1666
ACCCCCUCCC	chr12:132568947-132569214(+)$1	267	180	190	22.2222
ucacccuccc	chr9:130375183-130375455(+)$1	272	27	37	17.9861
GCCCCAUCCC	chr17:36715352-36715762(-)$1	410	12	22	18.1944
UCCCCUUCCC	chr16:1509941-1510238(-)$1	297	260	270	18.2638
caccccuccc	chr16:16420334-16420638(+)$1	304	31	41	18.1944
ACCCCCUCGC	chr3:47452428-47452701(+)$1	273	150	160	17.5694
UCCCCCUCCA	chr7:158188565-158188846(-)$1	281	255	265	18.0555
UCCCCCUCCC	chr11:2160109-2160336(-)$1	227	138	148	22.5000
ucccccuccc	chr6:168228026-168228320(+)$1	294	24	34	22.5000
uccaccuccc	chr20:62578303-62578533(-)$1	230	162	172	18.1250
ucccccuccc	chr10:32143780-32144144(-)$1	364	62	72	22.5000
CCCCCCACCC	chr12:7024783-7025030(+)$1	247	79	89	18.3333
GUCCCCUCCC	chr9:35697459-35697717(-)$1	258	91	101	19.1666
uccccuuccc	chr5:154137173-154137403(+)$1	230	180	190	18.2638
GACCCCUCCC	chr19:1295157-1295537(+)$1	380	57	67	18.6111
ccucccuccc	chr16:78638752-78639070(+)$1	318	7	17	17.9166
gcccccaccc	chr1:16262381-16262679(+)$1	298	77	87	18.7499
GCCCCCACCC	chr16:2577649-2577889(+)$1	240	27	37	18.7499
ucccccucgc	chr11:2159632-2159839(-)$1	207	19	29	17.8472
ACCCCCUCCC	chr22:38051587-38051878(+)$1	291	135	145	22.2222
GCCCCCUCCC	chr19:39226142-39226408(-)$1	266	191	201	22.5694
gcccccuccc	chr19:36211816-36212147(+)$1	331	320	330	22.5694
ucccccuccc	chr6:129940536-129940776(-)$1	240	146	156	22.5000
ccucccuccc	chr2:242424761-242425067(+)$1	306	51	61	17.9166
GCCCCCUUCC	chr16:595220-595467(+)$1	247	138	148	17.9861
ACCCCCACCC	chr22:50785178-50785416(+)$1	238	132	142	18.4027
CUCCCCUCCC	chr7:1028464-1028702(+)$1	238	26	36	18.7499
CCCGCCUCCC	chr7:73013883-73014119(-)$1	236	109	119	17.9166
uuccccuccc	chr17:80801376-80801645(+)$1	269	53	63	19.0972
ACUCCCUCCC	chr1:19228602-19228878(-)$1	276	7	17	17.9861
UCUCCCUCCC	chr16:29910632-29910913(-)$1	281	49	59	18.2638
GCCCCCACCC	chr11:70861630-70861895(-)$1	265	62	72	18.7499
accccuuccc	chrX:71441697-71441995(+)$1	298	64	74	17.9861
ucccccuccc	chr4:3361044-3361300(+)$1	256	53	63	22.5000
ucccccuccc	chr12:31650546-31650822(-)$1	276	21	31	22.5000
cuccccuccc	chr12:11013193-11013504(-)$1	311	26	36	18.7499
ACCGCCUCCC	chr3:12955683-12955944(-)$1	261	97	107	17.9861
GCCCCCGCCC	chr7:207309-207578(+)$1	269	234	244	18.4027

#otherMatches

#Struct PSSM
^^^^^^^^^^	chr1:57195837-57196142(-)$1	305	38	48	22.5000
ccc22dddd2	chr22:50714616-50714873(-)$1	257	30	40	22.5694
::::::::::	chr6:107955525-107955789(+)$1	264	132	142	18.1250
::::::::::	chr17:48745991-48746275(+)$1	284	15	25	17.7777
PPPPPGGGGG	chr22:47523873-47524127(+)$1	254	32	42	17.7083
ff[bb[eeee	chr6:44095371-44095651(+)$1	280	130	140	19.1666
::::::::::	chr1:20812302-20812563(-)$1	261	11	21	18.6805
:::bb$$$$$	chr11:2159926-2160130(-)$1	204	35	45	17.9861
ddddccc###	chr19:39436043-39436270(-)$1	227	77	87	18.5416
::::::::::	chr19:45323159-45323412(+)$1	253	100	110	18.2638
::::::::::	chr1:153779149-153779414(-)$1	265	159	169	17.5694
::::::::::	chr3:197407703-197408004(-)$1	301	55	65	18.8194
::::::::::	chr2:122287512-122287891(-)$1	379	176	186	17.8472
zzzzccc333	chr19:17451393-17451652(+)$1	259	199	209	17.2916
::::::DDDD	chr18:77671681-77671949(-)$1	268	13	23	19.1666
####bb"""d	chr17:27212870-27213137(-)$1	267	51	61	18.3333
b[hhhhhhhh	chr1:12654999-12655244(-)$1	245	124	134	17.9861
DD::::::::	chr19:496414-496712(-)$1	298	18	28	22.5694
ssssssssss	chr16:89974915-89975190(+)$1	275	16	26	17.7777
::::::::::	chr7:64141831-64142102(+)$1	271	127	137	18.2638
iiiiidddd!	chr19:56172526-56172777(+)$1	251	147	157	22.5694
DD?????DDD	chr20:60560059-60560272(-)$1	213	187	197	17.5694
d:::::::::	chr19:45898776-45899074(-)$1	298	89	99	17.7083
::::::::::	chr17:73138492-73138800(-)$1	308	57	67	22.1527
e"""bb"""d	chr16:50583004-50583252(+)$1	248	206	216	17.6388
::::::::::	chrX:129147646-129147871(+)$1	225	206	216	18.4027
::::::::::	chr17:4793338-4793601(+)$1	263	27	37	18.8194
FFF{BBMMMM	chr15:56535305-56535578(-)$1	273	19	29	18.7499
::::::ccc!	chr17:7751102-7751358(+)$1	256	35	45	17.9861
dd&&&&&&&d	chr16:188255-188514(-)$1	259	22	32	17.9861
::::::::::	chr11:68831693-68832007(+)$1	314	57	67	22.1527
::::::::::	chr2:74274132-74274394(+)$1	262	56	66	17.9861
EEE::ccc[f	chr7:157602992-157603262(-)$1	270	20	30	18.0555
::::::::::	chr18:77672009-77672262(-)$1	253	78	88	19.1666
dnnnnndddd	chr12:132568947-132569214(+)$1	267	180	190	22.2222
::::::::::	chr9:130375183-130375455(+)$1	272	27	37	17.9861
CCC:::::::	chr17:36715352-36715762(-)$1	410	12	22	18.1944
:ddddooooo	chr16:1509941-1510238(-)$1	297	260	270	18.2638
FFFCCCLLLE	chr16:16420334-16420638(+)$1	304	31	41	18.1944
fff:::::cc	chr3:47452428-47452701(+)$1	273	150	160	17.5694
oooooccc::	chr7:158188565-158188846(-)$1	281	255	265	18.0555
uuuuuuuuuu	chr11:2160109-2160336(-)$1	227	138	148	22.5000
::::::::::	chr6:168228026-168228320(+)$1	294	24	34	22.5000
IIIIIIII::	chr20:62578303-62578533(-)$1	230	162	172	18.1250
::::::::::	chr10:32143780-32144144(-)$1	364	62	72	22.5000
^^^^^^^^^^	chr12:7024783-7025030(+)$1	247	79	89	18.3333
dd::::::::	chr9:35697459-35697717(-)$1	258	91	101	19.1666
hhhhhhhh::	chr5:154137173-154137403(+)$1	230	180	190	18.2638
ccc]bb]bb:	chr19:1295157-1295537(+)$1	380	57	67	18.6111
::::::::::	chr16:78638752-78639070(+)$1	318	7	17	17.9166
^^^^^^^^^^	chr1:16262381-16262679(+)$1	298	77	87	18.7499
dddccc:ddd	chr16:2577649-2577889(+)$1	240	27	37	18.7499
::::::::cc	chr11:2159632-2159839(-)$1	207	19	29	17.8472
::::HHHHHH	chr22:38051587-38051878(+)$1	291	135	145	22.2222
dddd::::::	chr19:39226142-39226408(-)$1	266	191	201	22.5694
cc::::::::	chr19:36211816-36212147(+)$1	331	320	330	22.5694
::::::::::	chr6:129940536-129940776(-)$1	240	146	156	22.5000
qqqqqqqbba	chr2:242424761-242425067(+)$1	306	51	61	17.9166
ddddbb!!bb	chr16:595220-595467(+)$1	247	138	148	17.9861
bbwwwwwwww	chr22:50785178-50785416(+)$1	238	132	142	18.4027
::::::::::	chr7:1028464-1028702(+)$1	238	26	36	18.7499
>>>>>>>>>e	chr7:73013883-73014119(-)$1	236	109	119	17.9166
^^^^^^^^^^	chr17:80801376-80801645(+)$1	269	53	63	19.0972
::::::::::	chr1:19228602-19228878(-)$1	276	7	17	17.9861
HHH::dddda	chr16:29910632-29910913(-)$1	281	49	59	18.2638
bb22aeeeee	chr11:70861630-70861895(-)$1	265	62	72	18.7499
::::::::::	chrX:71441697-71441995(+)$1	298	64	74	17.9861
::::::::::	chr4:3361044-3361300(+)$1	256	53	63	22.5000
::::::::::	chr12:31650546-31650822(-)$1	276	21	31	22.5000
::::::::::	chr12:11013193-11013504(-)$1	311	26	36	18.7499
b]ddddcccD	chr3:12955683-12955944(-)$1	261	97	107	17.9861
ddmmmmdddd	chr7:207309-207578(+)$1	269	234	244	18.4027

#DB
..........	chr1:57195837-57196142(-)$1	1	38	48	22.5000
)))..)))).	chr22:50714616-50714873(-)$1	1	30	40	22.5694
..........	chr6:107955525-107955789(+)$1	1	132	142	18.1250
..........	chr17:48745991-48746275(+)$1	1	15	25	17.7777
.....(((((	chr22:47523873-47524127(+)$1	1	32	42	17.7083
((.((.((((	chr6:44095371-44095651(+)$1	1	130	140	19.1666
..........	chr1:20812302-20812563(-)$1	1	11	21	18.6805
...((.....	chr11:2159926-2160130(-)$1	1	35	45	17.9861
(((((((...	chr19:39436043-39436270(-)$1	1	77	87	18.5416
..........	chr19:45323159-45323412(+)$1	1	100	110	18.2638
..........	chr1:153779149-153779414(-)$1	1	159	169	17.5694
..........	chr3:197407703-197408004(-)$1	1	55	65	18.8194
..........	chr2:122287512-122287891(-)$1	1	176	186	17.8472
....)))...	chr19:17451393-17451652(+)$1	1	199	209	17.2916
......((((	chr18:77671681-77671949(-)$1	1	13	23	19.1666
....((...(	chr17:27212870-27213137(-)$1	1	51	61	18.3333
(.((((((((	chr1:12654999-12655244(-)$1	1	124	134	17.9861
((........	chr19:496414-496712(-)$1	1	18	28	22.5694
..........	chr16:89974915-89975190(+)$1	1	16	26	17.7777
..........	chr7:64141831-64142102(+)$1	1	127	137	18.2638
(((((((((.	chr19:56172526-56172777(+)$1	1	147	157	22.5694
)).....)))	chr20:60560059-60560272(-)$1	1	187	197	17.5694
).........	chr19:45898776-45899074(-)$1	1	89	99	17.7083
..........	chr17:73138492-73138800(-)$1	1	57	67	22.1527
(...((...(	chr16:50583004-50583252(+)$1	1	206	216	17.6388
..........	chrX:129147646-129147871(+)$1	1	206	216	18.4027
..........	chr17:4793338-4793601(+)$1	1	27	37	18.8194
(((.((....	chr15:56535305-56535578(-)$1	1	19	29	18.7499
......(((.	chr17:7751102-7751358(+)$1	1	35	45	17.9861
((.......(	chr16:188255-188514(-)$1	1	22	32	17.9861
..........	chr11:68831693-68832007(+)$1	1	57	67	22.1527
..........	chr2:74274132-74274394(+)$1	1	56	66	17.9861
(((..(((.(	chr7:157602992-157603262(-)$1	1	20	30	18.0555
..........	chr18:77672009-77672262(-)$1	1	78	88	19.1666
(.....))))	chr12:132568947-132569214(+)$1	1	180	190	22.2222
..........	chr9:130375183-130375455(+)$1	1	27	37	17.9861
(((.......	chr17:36715352-36715762(-)$1	1	12	22	18.1944
.((((.....	chr16:1509941-1510238(-)$1	1	260	270	18.2638
((((((...(	chr16:16420334-16420638(+)$1	1	31	41	18.1944
))).....((	chr3:47452428-47452701(+)$1	1	150	160	17.5694
.....)))..	chr7:158188565-158188846(-)$1	1	255	265	18.0555
..........	chr11:2160109-2160336(-)$1	1	138	148	22.5000
..........	chr6:168228026-168228320(+)$1	1	24	34	22.5000
))))))))..	chr20:62578303-62578533(-)$1	1	162	172	18.1250
..........	chr10:32143780-32144144(-)$1	1	62	72	22.5000
..........	chr12:7024783-7025030(+)$1	1	79	89	18.3333
))........	chr9:35697459-35697717(-)$1	1	91	101	19.1666
))))))))..	chr5:154137173-154137403(+)$1	1	180	190	18.2638
))).)).)).	chr19:1295157-1295537(+)$1	1	57	67	18.6111
..........	chr16:78638752-78639070(+)$1	1	7	17	17.9166
..........	chr1:16262381-16262679(+)$1	1	77	87	18.7499
)))))).(((	chr16:2577649-2577889(+)$1	1	27	37	18.7499
........((	chr11:2159632-2159839(-)$1	1	19	29	17.8472
....))))))	chr22:38051587-38051878(+)$1	1	135	145	22.2222
))))......	chr19:39226142-39226408(-)$1	1	191	201	22.5694
))........	chr19:36211816-36212147(+)$1	1	320	330	22.5694
..........	chr6:129940536-129940776(-)$1	1	146	156	22.5000
.......)))	chr2:242424761-242425067(+)$1	1	51	61	17.9166
))))((..((	chr16:595220-595467(+)$1	1	138	148	17.9861
((........	chr22:50785178-50785416(+)$1	1	132	142	18.4027
..........	chr7:1028464-1028702(+)$1	1	26	36	18.7499
.........)	chr7:73013883-73014119(-)$1	1	109	119	17.9166
..........	chr17:80801376-80801645(+)$1	1	53	63	19.0972
..........	chr1:19228602-19228878(-)$1	1	7	17	17.9861
(((..(((((	chr16:29910632-29910913(-)$1	1	49	59	18.2638
))..))))))	chr11:70861630-70861895(-)$1	1	62	72	18.7499
..........	chrX:71441697-71441995(+)$1	1	64	74	17.9861
..........	chr4:3361044-3361300(+)$1	1	53	63	22.5000
..........	chr12:31650546-31650822(-)$1	1	21	31	22.5000
..........	chr12:11013193-11013504(-)$1	1	26	36	18.7499
).)))))))(	chr3:12955683-12955944(-)$1	1	97	107	17.9861
((....))))	chr7:207309-207578(+)$1	1	234	244	18.4027

#PSSM
G : 0.22	u : 0.19	A : 0.15	c : 0.13	U : 0.08	a : 0.06	g : 0.06	C : 0.06	
C : 0.43	c : 0.38	u : 0.08	U : 0.05	G : 0.01	a : 0.01	A : 0.01	
C : 0.47	c : 0.44	u : 0.04	U : 0.02	a : 0.01	
c : 0.45	C : 0.44	G : 0.05	a : 0.02	u : 0.01	
C : 0.50	c : 0.48	g : 0.01	
c : 0.45	C : 0.44	u : 0.04	A : 0.02	G : 0.01	U : 0.01	
u : 0.45	U : 0.40	A : 0.05	a : 0.04	G : 0.02	C : 0.01	
c : 0.48	C : 0.45	U : 0.02	A : 0.01	g : 0.01	
c : 0.48	C : 0.47	U : 0.01	G : 0.01	g : 0.01	
C : 0.47	c : 0.45	A : 0.02	a : 0.01	U : 0.01	g : 0.01	

#score	1380.6944444444441
#seq	72
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_CDS_m3_run1.nuc.txt

#NT
cuucauu	chr20:33510969-33511273(+)$1	304	56	63	12.6666
CUUCUUG	chr7:2297328-2297584(-)$1	256	187	194	12.2280
CUUCUUU	chr7:95813606-95813897(-)$1	291	92	99	16.6140
CCUCUUU	chr6:49582454-49582718(-)$1	264	132	139	12.3157
AUUCUUU	chr22:45726321-45726603(+)$1	282	52	59	12.8421
CUUCUCU	chr5:139864549-139864827(+)$1	278	242	249	12.4912
CUUCAUU	chr5:126874594-126874862(+)$1	268	214	221	12.6666
CUUCUUA	chr8:21995947-21996192(-)$1	245	212	219	12.1403
CUUCUAU	chr5:167921404-167921678(+)$1	274	136	143	12.2280
CUUGUUU	chr5:38975580-38975889(-)$1	309	54	61	12.5789
UUUCUUU	chr17:26939576-26939855(-)$1	279	135	142	13.3684
UUUCUUU	chr18:44395199-44395457(-)$1	258	153	160	13.3684
CCUCUUU	chr13:113480858-113481131(+)$1	273	187	194	12.3157
CUUCUUU	chr1:160213698-160213978(-)$1	280	99	106	16.6140
CUUCUUU	chr22:38884131-38884367(-)$1	236	131	138	16.6140
CUACUUU	chr14:21461977-21462261(+)$1	284	34	41	12.4912
CUUCAUU	chrX:107380172-107380436(+)$1	264	125	132	12.6666
UUUCUUU	chr3:12626343-12626629(-)$1	286	135	142	13.3684
CUUCUUU	chr7:149416964-149417248(+)$1	284	122	129	16.6140
CUCCUUU	chr7:128477300-128477554(+)$1	254	135	142	12.7543
CUUGUUU	chr1:100543897-100544138(+)$1	241	173	180	12.5789
CUGCUUU	chr4:129776609-129776890(+)$1	281	57	64	12.4035
CUUAUUU	chr16:74682964-74683245(-)$1	281	96	103	12.3157
CUACUUU	chr1:44441323-44441579(+)$1	256	78	85	12.4912
CUUCUUG	chr6:33170571-33170808(+)$1	237	97	104	12.2280
CUUCUUU	chr12:57626816-57627102(+)$1	286	104	111	16.6140
cuucuuu	chr12:75898851-75899188(-)$1	337	252	259	16.6140
GUUCUUU	chr20:57019006-57019308(+)$1	302	242	249	12.8421
GUUCUUU	chr12:107386507-107386810(-)$1	303	94	101	12.8421
UUUCUUU	chr5:158621694-158621953(-)$1	259	55	62	13.3684
CUUCUGU	chr17:78109781-78110061(-)$1	280	62	69	12.2280
CCUCUUU	chr1:231400888-231401157(+)$1	269	138	145	12.3157
CUCCUUU	chr15:43022843-43023078(-)$1	235	208	215	12.7543
UUUCUUU	chr4:56743946-56744267(+)$1	321	87	94	13.3684
cuuguuu	chr6:31728780-31729077(+)$1	297	7	14	12.5789
CUUCCUU	chr11:244557-244802(+)$1	245	55	62	12.6666
CUUCUUC	chr11:61069724-61069986(-)$1	262	146	153	12.2280
CUCCUUU	chr4:48859098-48859370(+)$1	272	41	48	12.7543
AUUCUUU	chr10:51580411-51580658(+)$1	247	97	104	12.8421
CUUCUCU	chr19:59059291-59059546(+)$1	255	74	81	12.4912
cuuUUUU	chr6:86329016-86329292(-)$1	276	25	32	12.4035
CUCCUUU	chr1:203022714-203022986(+)$1	272	140	147	12.7543
CUUUUUU	chr1:12052459-12052743(+)$1	284	275	282	12.4035
CCUCUUU	chr6:49583360-49583635(-)$1	275	36	43	12.3157
CUUCCUU	chr12:49496588-49496907(-)$1	319	8	15	12.6666
UUCCUUU	chr12:118467408-118467731(+)$1	323	256	263	9.5087
CUUCUCU	chr5:150112923-150113182(-)$1	259	49	56	12.4912
CUUCUCU	chr17:1563983-1564252(-)$1	269	114	121	12.4912
CUUCUUU	chr16:11852279-11852550(-)$1	271	75	82	16.6140
CUUGUUU	chr22:29695072-29695360(+)$1	288	94	101	12.5789
CUUCUUC	chr1:245023674-245023934(-)$1	260	203	210	12.2280
CUUCUUU	chr9:131030168-131030421(-)$1	253	92	99	16.6140
UUUCUUU	chr7:138252077-138252352(+)$1	275	134	141	13.3684
CUUCCUU	chr3:9965768-9966054(+)$1	286	126	133	12.6666
CUUCAUU	chr1:43224949-43225216(-)$1	267	9	16	12.6666
UUUCUUU	chr9:91931129-91931393(+)$1	264	145	152	13.3684

#otherMatches

#Struct PSSM
ggggg!!	chr1:150300622-150300892(+)$1	270	99	106	12.6666
rrrrrrr	chr20:33510969-33511273(+)$1	304	56	63	12.6666
ppppppb	chr7:2297328-2297584(-)$1	256	187	194	12.2280
YEEEEEZ	chr7:95813606-95813897(-)$1	291	92	99	16.6140
ttttttg	chr6:49582454-49582718(-)$1	264	132	139	12.3157
[ccc%%%	chr22:45726321-45726603(+)$1	282	52	59	12.8421
dd:EEEE	chr5:139864549-139864827(+)$1	278	242	249	12.4912
+++++++	chr5:126874594-126874862(+)$1	268	214	221	12.6666
:::CCC}	chr8:21995947-21996192(-)$1	245	212	219	12.1403
ffffff:	chr5:167921404-167921678(+)$1	274	136	143	12.2280
JJJ{CCC	chr5:38975580-38975889(-)$1	309	54	61	12.5789
=======	chr17:26939576-26939855(-)$1	279	135	142	13.3684
EZZZGGG	chr18:44395199-44395457(-)$1	258	153	160	13.3684
@@@@@@@	chr13:113480858-113481131(+)$1	273	187	194	12.3157
hhhhhh:	chr1:160213698-160213978(-)$1	280	99	106	16.6140
c::::::	chr22:38884131-38884367(-)$1	236	131	138	16.6140
DD{GGGG	chr14:21461977-21462261(+)$1	284	34	41	12.4912
nnnnnee	chrX:107380172-107380436(+)$1	264	125	132	12.6666
hhcccpp	chr3:12626343-12626629(-)$1	286	135	142	13.3684
sssssss	chr7:149416964-149417248(+)$1	284	122	129	16.6140
ccc]eee	chr7:128477300-128477554(+)$1	254	135	142	12.7543
"""dddd	chr1:100543897-100544138(+)$1	241	173	180	12.5789
fddddnn	chr4:129776609-129776890(+)$1	281	57	64	12.4035
ddd[fff	chr16:74682964-74683245(-)$1	281	96	103	12.3157
e%%%%%%	chr1:44441323-44441579(+)$1	256	78	85	12.4912
==fffff	chr6:33170571-33170808(+)$1	237	97	104	12.2280
c''''''	chr12:57626816-57627102(+)$1	286	104	111	16.6140
:ddddrr	chr12:75898851-75899188(-)$1	337	252	259	16.6140
]ffffff	chr20:57019006-57019308(+)$1	302	242	249	12.8421
((((hhh	chr12:107386507-107386810(-)$1	303	94	101	12.8421
ffffff!	chr5:158621694-158621953(-)$1	259	55	62	13.3684
ddfffff	chr17:78109781-78110061(-)$1	280	62	69	12.2280
::bb[gg	chr1:231400888-231401157(+)$1	269	138	145	12.3157
dddd777	chr15:43022843-43023078(-)$1	235	208	215	12.7543
CLLLHHH	chr4:56743946-56744267(+)$1	321	87	94	13.3684
DDDEEEE	chr6:31728780-31729077(+)$1	297	7	14	12.5789
{EEEEE{	chr11:244557-244802(+)$1	245	55	62	12.6666
wwwwwww	chr11:61069724-61069986(-)$1	262	146	153	12.2280
ggggggm	chr4:48859098-48859370(+)$1	272	41	48	12.7543
::::fff	chr10:51580411-51580658(+)$1	247	97	104	12.8421
33bb]bb	chr19:59059291-59059546(+)$1	255	74	81	12.4912
HHHHHHH	chr6:86329016-86329292(-)$1	276	25	32	12.4035
c]ccc::	chr1:203022714-203022986(+)$1	272	140	147	12.7543
:::::::	chr1:12052459-12052743(+)$1	284	275	282	12.4035
:::::::	chr6:49583360-49583635(-)$1	275	36	43	12.3157
hhhhhh!	chr12:49496588-49496907(-)$1	319	8	15	12.6666
/EEEEE:	chr12:118467408-118467731(+)$1	323	256	263	9.5087
GGGGGGG	chr5:150112923-150113182(-)$1	259	49	56	12.4912
ee!!ddd	chr17:1563983-1564252(-)$1	269	114	121	12.4912
ee55555	chr16:11852279-11852550(-)$1	271	75	82	16.6140
ggggg[c	chr22:29695072-29695360(+)$1	288	94	101	12.5789
hhhhhhh	chr1:245023674-245023934(-)$1	260	203	210	12.2280
]eeeee2	chr9:131030168-131030421(-)$1	253	92	99	16.6140
ppbb22c	chr7:138252077-138252352(+)$1	275	134	141	13.3684
EEKKDDD	chr3:9965768-9966054(+)$1	286	126	133	12.6666
DDDDLLL	chr1:43224949-43225216(-)$1	267	9	16	12.6666
ffff666	chr9:91931129-91931393(+)$1	264	145	152	13.3684

#DB
(((((..	chr1:150300622-150300892(+)$1	1	99	106	12.6666
.......	chr20:33510969-33511273(+)$1	1	56	63	12.6666
......)	chr7:2297328-2297584(-)$1	1	187	194	12.2280
.))))).	chr7:95813606-95813897(-)$1	1	92	99	16.6140
......)	chr6:49582454-49582718(-)$1	1	132	139	12.3157
.(((...	chr22:45726321-45726603(+)$1	1	52	59	12.8421
)).))))	chr5:139864549-139864827(+)$1	1	242	249	12.4912
.......	chr5:126874594-126874862(+)$1	1	214	221	12.6666
...))).	chr8:21995947-21996192(-)$1	1	212	219	12.1403
)))))).	chr5:167921404-167921678(+)$1	1	136	143	12.2280
(((.(((	chr5:38975580-38975889(-)$1	1	54	61	12.5789
(((((((	chr17:26939576-26939855(-)$1	1	135	142	13.3684
)...)))	chr18:44395199-44395457(-)$1	1	153	160	13.3684
.......	chr13:113480858-113481131(+)$1	1	187	194	12.3157
)))))).	chr1:160213698-160213978(-)$1	1	99	106	16.6140
)......	chr22:38884131-38884367(-)$1	1	131	138	16.6140
((.((((	chr14:21461977-21462261(+)$1	1	34	41	12.4912
.....))	chrX:107380172-107380436(+)$1	1	125	132	12.6666
))(((..	chr3:12626343-12626629(-)$1	1	135	142	13.3684
.......	chr7:149416964-149417248(+)$1	1	122	129	16.6140
))).)))	chr7:128477300-128477554(+)$1	1	135	142	12.7543
...((((	chr1:100543897-100544138(+)$1	1	173	180	12.5789
)((((..	chr4:129776609-129776890(+)$1	1	57	64	12.4035
(((.(((	chr16:74682964-74683245(-)$1	1	96	103	12.3157
(......	chr1:44441323-44441579(+)$1	1	78	85	12.4912
))(((((	chr6:33170571-33170808(+)$1	1	97	104	12.2280
(......	chr12:57626816-57627102(+)$1	1	104	111	16.6140
.((((..	chr12:75898851-75899188(-)$1	1	252	259	16.6140
.))))))	chr20:57019006-57019308(+)$1	1	242	249	12.8421
....(((	chr12:107386507-107386810(-)$1	1	94	101	12.8421
((((((.	chr5:158621694-158621953(-)$1	1	55	62	13.3684
)))))))	chr17:78109781-78110061(-)$1	1	62	69	12.2280
..((.((	chr1:231400888-231401157(+)$1	1	138	145	12.3157
))))...	chr15:43022843-43023078(-)$1	1	208	215	12.7543
(...(((	chr4:56743946-56744267(+)$1	1	87	94	13.3684
(((((((	chr6:31728780-31729077(+)$1	1	7	14	12.5789
.(((((.	chr11:244557-244802(+)$1	1	55	62	12.6666
.......	chr11:61069724-61069986(-)$1	1	146	153	12.2280
((((((.	chr4:48859098-48859370(+)$1	1	41	48	12.7543
....(((	chr10:51580411-51580658(+)$1	1	97	104	12.8421
..)).))	chr19:59059291-59059546(+)$1	1	74	81	12.4912
(((((((	chr6:86329016-86329292(-)$1	1	25	32	12.4035
).)))..	chr1:203022714-203022986(+)$1	1	140	147	12.7543
.......	chr1:12052459-12052743(+)$1	1	275	282	12.4035
.......	chr6:49583360-49583635(-)$1	1	36	43	12.3157
((((((.	chr12:49496588-49496907(-)$1	1	8	15	12.6666
.))))).	chr12:118467408-118467731(+)$1	1	256	263	9.5087
(((((((	chr5:150112923-150113182(-)$1	1	49	56	12.4912
((..(((	chr17:1563983-1564252(-)$1	1	114	121	12.4912
)).....	chr16:11852279-11852550(-)$1	1	75	82	16.6140
(((((.(	chr22:29695072-29695360(+)$1	1	94	101	12.5789
(((((((	chr1:245023674-245023934(-)$1	1	203	210	12.2280
.))))).	chr9:131030168-131030421(-)$1	1	92	99	16.6140
..))..)	chr7:138252077-138252352(+)$1	1	134	141	13.3684
((..(((	chr3:9965768-9966054(+)$1	1	126	133	12.6666
((((...	chr1:43224949-43225216(-)$1	1	9	16	12.6666
))))...	chr9:91931129-91931393(+)$1	1	145	152	13.3684

#PSSM
C : 0.71	U : 0.14	c : 0.07	A : 0.03	G : 0.03	
U : 0.85	u : 0.07	C : 0.07	
U : 0.78	C : 0.08	u : 0.07	A : 0.03	G : 0.01	
C : 0.84	G : 0.05	c : 0.03	U : 0.03	A : 0.01	g : 0.01	
U : 0.82	C : 0.07	A : 0.05	u : 0.03	a : 0.01	
U : 0.84	C : 0.07	u : 0.05	A : 0.01	G : 0.01	
U : 0.85	u : 0.05	G : 0.03	C : 0.03	A : 0.01	

#score	749.2807017543869
#seq	57
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_transcript_m1_run2.nuc.txt

#NT
GAACCCAAAGGCUCUUUUCAGAGCCACCCACACGAUC	chr1:228646099-228646358(+)$1	259	130	167	74.6065
AACCCCAAAGGCUCUUUUAAGAGCCACCCAGAUACCC	chr6:26123600-26123855(-)$1	255	131	168	68.4590
AACCCCAAAGGCUCUUUUAAGAGCCACCCAGAUACCC	chr6:26123595-26123800(-)$1	205	76	113	68.4590
AAUCCCAAAGGCUCUUUUAAGAGCCACCCACUUUUUC	chr6:26200100-26200304(+)$1	204	86	123	78.1311
UAACCCAAAGGCUCUUUUCAGAGCCACUUAAACAUAC	chr6:25727431-25727664(+)$1	233	112	149	67.9672
CUUAACAAAGGCUCUUUUCAGAGCCACCCAUGUAUUC	chr6:26198977-26199246(-)$1	269	205	242	67.7213
AAACUCAAAGGCUCUUUUCAGAGCCACUCAAGUCUCA	chr6:26216376-26216595(-)$1	219	125	162	66.6557
AAGACAAAAGGCUCUUUUCAGAGCCACCCACCAUUUC	chr6:27860421-27860671(-)$1	250	165	202	73.7868
AAACCCAAAGGCUCUUUUCAGAGCCACUUAAUGAUUU	chr6:26252152-26252401(+)$1	249	121	158	68.2950
CACCCCAAAGGCUCUUUUCAGAGCCACUCAGUCUUCC	chr6:27806772-27806986(+)$1	214	86	123	72.3114
AAGACCAAAGGCUCUUUUUAGAGCCACCCAAGUUUUC	chr1:149858807-149859059(+)$1	252	124	161	73.4590
AAGACAAAAGGCUCUUUUCAGAGCCACCCACCAUUUC	chr6:27860378-27860621(-)$1	243	115	152	73.7868
AAACUCAAAGGCUCUUUUCAGAGCCACUCAAGUCUCA	chr6:26216395-26216649(-)$1	254	179	216	66.6557
AAUCCCAAAGGCUCUUUUAAGAGCCACCCACUUUUUC	chr6:26200065-26200292(+)$1	227	121	158	78.1311
GGAACCAAAGGCUCUUUUCAGAGCCACCUACAAUUUU	chr6:27776204-27776455(+)$1	251	211	248	70.2622
GAAACCAAAGGCUCUUUUCAGAGCCACCCACCUUUUC	chr6:26217459-26217694(+)$1	235	176	213	81.5737
AAACCCAAAGGCUCUUUUCAGAGCCACCCACUUAUUC	chr6:26031785-26032007(-)$1	222	158	195	81.1639
CACCCCAAAGGCUCUUUUCAGAGCCACUCAGUCUUCC	chr6:27806744-27806965(+)$1	221	114	151	72.3114
CACCCCAAAGGCUCUUUUCAGAGCCACUCAGUCUUCC	chr6:27806700-27806930(+)$1	230	158	195	72.3114
GCUUCCAAAGGCUCUUUUCAGAGCCACUUACAUUCUC	chr6:27858058-27858280(-)$1	222	158	195	68.6229
AAUCCCAAAGGCUCUUUUAAGAGCCACGCAUGUUUUC	chr6:26158665-26158934(+)$1	269	140	177	71.9836
CAAUACAACGGCUCUUUUCAGAGCCACCUACUAUUUC	chr6:27833422-27833675(+)$1	253	124	161	68.3770
GCUUCCAAAGGCUCUUUUCAGAGCCACUUACAUUCUC	chr6:27857994-27858239(-)$1	245	117	154	68.6229
AACAGCAAAGGCUCUUUUCAGAGCCACCUACGACUUC	chr6:26033221-26033504(-)$1	283	154	191	70.1803
AACCCCAAAGGCUCUUUUAAGAGCCACUUAAAUUAUC	chr6:27114040-27114250(-)$1	210	81	118	68.6229
GCUUCCAAAGGCUCUUUUCAGAGCCACUUACAUUCUC	chr6:27858039-27858258(-)$1	219	136	173	68.6229
AUACCCAAAGGCUCUUUUCAGAGCCACCCACAUGCGC	chr6:27778156-27778366(+)$1	210	128	165	71.3278
AAACCCAAAGGCUCUUUUCAGAGCCAACCACCUUUUC	chr6:26196976-26197224(-)$1	248	183	220	78.3770
CUUAACAAAGGCUCUUUUCAGAGCCACCCAUGUAUUC	chr6:26198912-26199117(-)$1	205	76	113	67.7213
UAACCCAAAGGCUCUUUUCAGAGCCACUUAAACAUAC	chr6:25727464-25727672(+)$1	208	79	116	67.9672
AAUCCCAAAGGCUCUUUUAAGAGCCACCCACUUUUUC	chr6:26200104-26200315(+)$1	211	82	119	78.1311
CAACCCAAAGGCUCUUUUCAGAGCCACCCACCGCUCU	chr6:26157167-26157441(+)$1	274	146	183	71.9016
CACCCCAAAGGCUCUUUUCAGAGCCACUCAGUCUUCC	chr6:27806765-27806972(+)$1	207	93	130	72.3114
AUACCCAAAGGCUCUUUUCAGAGCCACCCACAUGCGC	chr6:27778166-27778412(+)$1	246	118	155	71.3278
CUUAACAAAGGCUCUUUUCAGAGCCACCCAUGUAUUC	chr6:26198917-26199177(-)$1	260	136	173	67.7213
CACCCCAAAGGCUCUUUUCAGAGCCACUCAGUCUUCC	chr6:27806730-27806944(+)$1	214	128	165	72.3114
CAUUGAAAAGGCUCUUUUCAGAGCCACUCACAAUUUC	chr6:26045961-26046195(+)$1	234	106	143	67.8032
CAAACCAACGGCUCUUUUCAGGGCCACCCACGUCUUC	chr6:27101102-27101336(+)$1	234	182	219	70.9180
UAAACCAAAGGCUCUUUUCAGAGCCACCAACAAUUUC	chr6:26250327-26250600(-)$1	273	203	240	75.7540
GAAACCAAAGGCUCUUUUCAGAGCCACCCACCUUUUC	chr6:26217549-26217763(+)$1	214	86	123	81.5737
AUACCCAAAGGCUCUUUUCAGAGCCACCCACAUGCGC	chr6:27778110-27778356(+)$1	246	174	211	71.3278
AAACUCAAAGGCUCUUUUCAGAGCCACUCAAGUCUCA	chr6:26216372-26216576(-)$1	204	106	143	66.6557
GGAACCAAAGGCUCUUUUCAGAGCCACCUACAAUUUU	chr6:27776257-27776474(+)$1	217	158	195	70.2622
GACUCCAAAGGCUCUUUUCAGAGCCACCCACCUAAUC	chr1:149857649-149857870(-)$1	221	108	145	73.5409
CAAACCAACGGCUCUUUUCAGGGCCACCCACGUCUUC	chr6:27101136-27101368(+)$1	232	148	185	70.9180
AAACCCAAAGGCUCUUUUCAGAGCCACCUACUUUGUC	chr6:26043355-26043591(-)$1	236	107	144	77.2295
CAAUCCAAAGGCUCUUUUCAGAGCCACUCACGCUUCC	chr6:27861507-27861762(+)$1	255	131	168	75.1803
CAACCCAAAGGCUCUUUUCAGAGCCACUCACUAUUAU	chr6:27775158-27775403(-)$1	245	117	154	72.3114
GAAACCAAAGGCUCUUUUCAGAGCCACCCACCUUUUC	chr6:26217494-26217701(+)$1	207	141	178	81.5737
AAAACAAAAGGCUCUUUUCAGAGCCACCUACCGUCUC	chr6:25726191-25726442(-)$1	251	122	159	70.2622
GAAACCAAAGGCUCUUUUCAGAGCCACCCACCUUUUC	chr6:26217542-26217749(+)$1	207	93	130	81.5737
GGAACCAAAGGCUCUUUUCAGAGCCACCUACAAUUUU	chr6:27776274-27776518(+)$1	244	141	178	70.2622
CAAACCAACGGCUCUUUUCAGGGCCACCCACGUCUUC	chr6:27101168-27101387(+)$1	219	116	153	70.9180
GACUCCAAAGGCUCUUUUCAGAGCCACCCACCUAAUC	chr1:149857670-149857939(-)$1	269	177	214	73.5409
CAACCCAAAGGCUCUUUUCAGAGCCACCCACCGCUCU	chr6:26157152-26157367(+)$1	215	161	198	71.9016
UAAACCAAAGGCUCUUUUCAGAGCCACCAACAAUUUC	chr6:26250269-26250527(-)$1	258	130	167	75.7540
GAAACCAAAGGCUCUUUUCAGAGCCACCCACCUUUUC	chr6:26217501-26217742(+)$1	241	134	171	81.5737
AAUCCCAAAGGCUCUUUUAAGAGCCACCCACUUUUUC	chr6:26200092-26200300(+)$1	208	94	131	78.1311
AACCCCAAAGGCUCUUUUAAGAGCCACUUAAAUUAUC	chr6:27114050-27114338(-)$1	288	169	206	68.6229
CAAUCCAAAGGCUCUUUUCAGAGCCACUCACGCUUCC	chr6:27861562-27861766(+)$1	204	76	113	75.1803

#otherMatches

#Struct PSSM
ddd%%%%%%ffffffmmmmffffff666666dddd]a	chr1:149813687-149813993(-)$1	306	179	216	75.9180
:::::::::ffffffmmmmffffffdddd"""aoooo	chr1:228646099-228646358(+)$1	259	130	167	74.6065
CEEEEE:::ffffffmmmmffffff::::::::::dd	chr6:26123600-26123855(-)$1	255	131	168	68.4590
CEEEEE:::ffffffmmmmffffff::::::::::dd	chr6:26123595-26123800(-)$1	205	76	113	68.4590
GGGGGG:::ffffffmmmmffffff:::::::::::e	chr6:26200100-26200304(+)$1	204	86	123	78.1311
:::::::::ffffffmmmmffffff:::::::::::c	chr6:25727431-25727664(+)$1	233	112	149	67.9672
+++++++++ffffffmmmmffffff55555ccc]===	chr6:26198977-26199246(-)$1	269	205	242	67.7213
:::::::=========="""ccc[aooooooa]ccc4	chr6:26216376-26216595(-)$1	219	125	162	66.6557
d::::::::ffffffmmmmffffff:::::::::ccc	chr6:27860421-27860671(-)$1	250	165	202	73.7868
e::::::::ffffffmmmmffffff:ffffffppppp	chr6:26252152-26252401(+)$1	249	121	158	68.2950
:::::::::ffffffmmmmffffff::::::ddddmm	chr6:27806772-27806986(+)$1	214	86	123	72.3114
::::==============[iiiiiiiii[dddd!!ee	chr1:149858807-149859059(+)$1	252	124	161	73.4590
d::::::::ffffffmmmmffffff:::::::::ccc	chr6:27860378-27860621(-)$1	243	115	152	73.7868
:::::::::ffffffmmmmffffff::::::::::::	chr6:26216395-26216649(-)$1	254	179	216	66.6557
:::::::::ffffffmmmmffffff::::::::::::	chr6:26200065-26200292(+)$1	227	121	158	78.1311
CCC}CCC::ffffffmmmmffffff::::::::FFFF	chr6:27776204-27776455(+)$1	251	211	248	70.2622
ffff$$$$$ffffffmmmmffffff88888888ffff	chr6:26217459-26217694(+)$1	235	176	213	81.5737
:::::::::ffffffmmmmffffff::::dddd!!bb	chr6:26031785-26032007(-)$1	222	158	195	81.1639
oobb:::::ffffffmmmmffffff::::::ddddoo	chr6:27806744-27806965(+)$1	221	114	151	72.3114
:::::::::ffffffmmmmffffff::::::ddddmm	chr6:27806700-27806930(+)$1	230	158	195	72.3114
f::::::::ffffffmmmmffffff::::::ffffff	chr6:27858058-27858280(-)$1	222	158	195	68.6229
::DDDD:::ffffffmmmmffffff::::::::::::	chr6:26158665-26158934(+)$1	269	140	177	71.9836
::::::::==========eeeeettttttttttteee	chr6:27833422-27833675(+)$1	253	124	161	68.3770
f::::::::ffffffmmmmffffff::::::ffffff	chr6:27857994-27858239(-)$1	245	117	154	68.6229
GGGGGG:::ffffffmmmmffffff::::::::::::	chr6:26033221-26033504(-)$1	283	154	191	70.1803
:::::::::ffffffmmmmffffff::::::::::::	chr6:27114040-27114250(-)$1	210	81	118	68.6229
f::::::::ffffffmmmmffffff::::::ffffff	chr6:27858039-27858258(-)$1	219	136	173	68.6229
:::BBEEEEECCChhhhhhhh[bbbboooooobb]bb	chr6:27778156-27778366(+)$1	210	128	165	71.3278
:::::::::ffffffmmmmffffff:::bb[eeeeem	chr6:26196976-26197224(-)$1	248	183	220	78.3770
+++++++++ffffffmmmmffffff55555ccc]===	chr6:26198912-26199117(-)$1	205	76	113	67.7213
:::::::::ffffffmmmmffffff:::::::::::c	chr6:25727464-25727672(+)$1	208	79	116	67.9672
:::::::::ffffffmmmmffffff::::::::::::	chr6:26200104-26200315(+)$1	211	82	119	78.1311
RRRCCC:::ffffffmmmmffffff::dddd[fffff	chr6:26157167-26157441(+)$1	274	146	183	71.9016
:::::::::ffffffmmmmffffff::::::ddddmm	chr6:27806765-27806972(+)$1	207	93	130	72.3114
{CCCMMMMDDDDiiiiiiiii[bbbboooooobb]bb	chr6:27778166-27778412(+)$1	246	118	155	71.3278
+++++++++ffffffmmmmffffff55555ccc]===	chr6:26198917-26199177(-)$1	260	136	173	67.7213
:::::::::ffffffmmmmffffff:::ddddcccoo	chr6:27806730-27806944(+)$1	214	128	165	72.3114
ooooccc::ffffffmmmmffffff::::ffffffuu	chr6:26045961-26046195(+)$1	234	106	143	67.8032
bqqqqqqqqbbccc::::::DDDD~~~~CCC:ddddo	chr6:27101102-27101336(+)$1	234	182	219	70.9180
d::::::::ffffffmmmmffffff::ddddpppppp	chr6:26250327-26250600(-)$1	273	203	240	75.7540
C::::::::ffffffmmmmffffff::cccaddddnn	chr6:26217549-26217763(+)$1	214	86	123	81.5737
~EEEEE::ccc[iiiiiiiii[bbbboooooobb]bb	chr6:27778110-27778356(+)$1	246	174	211	71.3278
:::::::=========="""ccc[aooooooa]ccc4	chr6:26216372-26216576(-)$1	204	106	143	66.6557
e''''''''ffffffmmmmffffff88888888eeee	chr6:27776257-27776474(+)$1	217	158	195	70.2622
FZZZBB:::ffffffmmmmffffff:cccdddd"""h	chr1:149857649-149857870(-)$1	221	108	145	73.5409
bqqqqqqqqbbccc::::::DDDD~~~~CCCDDDDdd	chr6:27101136-27101368(+)$1	232	148	185	70.9180
:::::::::ffffffmmmmffffff:::::eeeeell	chr6:26043355-26043591(-)$1	236	107	144	77.2295
eee!!bb[hhhhhhhhccc[ddddpppppppdddd33	chr6:27861507-27861762(+)$1	255	131	168	75.1803
GKKDDDD::ffffffmmmmffffff::::::::::::	chr6:27775158-27775403(-)$1	245	117	154	72.3114
ffff$$$$$ffffffmmmmffffff88888888ffff	chr6:26217494-26217701(+)$1	207	141	178	81.5737
:::::::::ffffffmmmmffffff::::::::FFFF	chr6:25726191-25726442(-)$1	251	122	159	70.2622
C::::::::ffffffmmmmffffff::cccaddddnn	chr6:26217542-26217749(+)$1	207	93	130	81.5737
ccc::::::ffffffmmmmffffff::eeeeemmmme	chr6:27776274-27776518(+)$1	244	141	178	70.2622
:::::::::ffffffmmmmffffff:::::::ddddo	chr6:27101168-27101387(+)$1	219	116	153	70.9180
cmmmmccc:ffffffmmmmffffff::::::cccnnn	chr1:149857670-149857939(-)$1	269	177	214	73.5409
:::::ccc[iiiiiiiiiaeeeeeqqqqqqqqeeeee	chr6:26157152-26157367(+)$1	215	161	198	71.9016
EKKCCC:::ffffffmmmmffffff::ddddpppppp	chr6:26250269-26250527(-)$1	258	130	167	75.7540
ffff$$$$$ffffffmmmmffffff88888888ffff	chr6:26217501-26217742(+)$1	241	134	171	81.5737
bb&&&&&&&ffffffmmmmffffff88888888bb88	chr6:26200092-26200300(+)$1	208	94	131	78.1311
sssssssssdddd333ffffffbb]dddd>>>>>>>>	chr6:27114050-27114338(-)$1	288	169	206	68.6229
eee!!bb[hhhhhhhhccc[ddddpppppppdddd33	chr6:27861562-27861766(+)$1	204	76	113	75.1803

#DB
(((......((((((....))))))......)))).)	chr1:149813687-149813993(-)$1	1	179	216	75.9180
.........((((((....))))))((((...(....	chr1:228646099-228646358(+)$1	1	130	167	74.6065
((((((...((((((....))))))..........((	chr6:26123600-26123855(-)$1	1	131	168	68.4590
((((((...((((((....))))))..........((	chr6:26123595-26123800(-)$1	1	76	113	68.4590
((((((...((((((....))))))...........(	chr6:26200100-26200304(+)$1	1	86	123	78.1311
.........((((((....))))))...........(	chr6:25727431-25727664(+)$1	1	112	149	67.9672
.........((((((....)))))).....))).)))	chr6:26198977-26199246(-)$1	1	205	242	67.7213
.......((((((((((...(((.(......).))).	chr6:26216376-26216595(-)$1	1	125	162	66.6557
)........((((((....)))))).........(((	chr6:27860421-27860671(-)$1	1	165	202	73.7868
)........((((((....)))))).((((((.....	chr6:26252152-26252401(+)$1	1	121	158	68.2950
.........((((((....))))))......((((..	chr6:27806772-27806986(+)$1	1	86	123	72.3114
....((((((((((((((.(((((((((.((((..((	chr1:149858807-149859059(+)$1	1	124	161	73.4590
)........((((((....)))))).........(((	chr6:27860378-27860621(-)$1	1	115	152	73.7868
.........((((((....))))))............	chr6:26216395-26216649(-)$1	1	179	216	66.6557
.........((((((....))))))............	chr6:26200065-26200292(+)$1	1	121	158	78.1311
))).)))..((((((....))))))........))))	chr6:27776204-27776455(+)$1	1	211	248	70.2622
((((.....((((((....))))))........))))	chr6:26217459-26217694(+)$1	1	176	213	81.5737
.........((((((....))))))....((((..((	chr6:26031785-26032007(-)$1	1	158	195	81.1639
..)).....((((((....))))))......((((..	chr6:27806744-27806965(+)$1	1	114	151	72.3114
.........((((((....))))))......((((..	chr6:27806700-27806930(+)$1	1	158	195	72.3114
)........((((((....))))))......((((((	chr6:27858058-27858280(-)$1	1	158	195	68.6229
..))))...((((((....))))))............	chr6:26158665-26158934(+)$1	1	140	177	71.9836
........(((((((((((((((...........)))	chr6:27833422-27833675(+)$1	1	124	161	68.3770
)........((((((....))))))......((((((	chr6:27857994-27858239(-)$1	1	117	154	68.6229
((((((...((((((....))))))............	chr6:26033221-26033504(-)$1	1	154	191	70.1803
.........((((((....))))))............	chr6:27114040-27114250(-)$1	1	81	118	68.6229
)........((((((....))))))......((((((	chr6:27858039-27858258(-)$1	1	136	173	68.6229
...))))))))))((((((((.((((......)).))	chr6:27778156-27778366(+)$1	1	128	165	71.3278
.........((((((....))))))...((.(((((.	chr6:26196976-26197224(-)$1	1	183	220	78.3770
.........((((((....)))))).....))).)))	chr6:26198912-26199117(-)$1	1	76	113	67.7213
.........((((((....))))))...........(	chr6:25727464-25727672(+)$1	1	79	116	67.9672
.........((((((....))))))............	chr6:26200104-26200315(+)$1	1	82	119	78.1311
...(((...((((((....))))))..((((.(((((	chr6:26157167-26157441(+)$1	1	146	183	71.9016
.........((((((....))))))......((((..	chr6:27806765-27806972(+)$1	1	93	130	72.3114
.(((....(((((((((((((.((((......)).))	chr6:27778166-27778412(+)$1	1	118	155	71.3278
.........((((((....)))))).....))).)))	chr6:26198917-26199177(-)$1	1	136	173	67.7213
.........((((((....))))))...(((((((..	chr6:27806730-27806944(+)$1	1	128	165	72.3114
....)))..((((((....))))))....((((((..	chr6:26045961-26046195(+)$1	1	106	143	67.8032
(........)))))......))))....))).((((.	chr6:27101102-27101336(+)$1	1	182	219	70.9180
)........((((((....))))))..((((......	chr6:26250327-26250600(-)$1	1	203	240	75.7540
(........((((((....))))))..((((((((..	chr6:26217549-26217763(+)$1	1	86	123	81.5737
.)))))..(((.(((((((((.((((......)).))	chr6:27778110-27778356(+)$1	1	174	211	71.3278
.......((((((((((...(((.(......).))).	chr6:26216372-26216576(-)$1	1	106	143	66.6557
(........((((((....))))))........))))	chr6:27776257-27776474(+)$1	1	158	195	70.2622
)...))...((((((....)))))).(((((((...(	chr1:149857649-149857870(-)$1	1	108	145	73.5409
(........)))))......))))....)))))))((	chr6:27101136-27101368(+)$1	1	148	185	70.9180
.........((((((....)))))).....(((((..	chr6:26043355-26043591(-)$1	1	107	144	77.2295
(((..((.(((((((((((.((((.......))))..	chr6:27861507-27861762(+)$1	1	131	168	75.1803
(..((((..((((((....))))))............	chr6:27775158-27775403(-)$1	1	117	154	72.3114
((((.....((((((....))))))........))))	chr6:26217494-26217701(+)$1	1	141	178	81.5737
.........((((((....))))))........))))	chr6:25726191-25726442(-)$1	1	122	159	70.2622
(........((((((....))))))..((((((((..	chr6:26217542-26217749(+)$1	1	93	130	81.5737
)))......((((((....))))))..(((((....)	chr6:27776274-27776518(+)$1	1	141	178	70.2622
.........((((((....)))))).......((((.	chr6:27101168-27101387(+)$1	1	116	153	70.9180
(....))).((((((....))))))......(((...	chr1:149857670-149857939(-)$1	1	177	214	73.5409
.....(((.(((((((((((((((........)))))	chr6:26157152-26157367(+)$1	1	161	198	71.9016
(..(((...((((((....))))))..((((......	chr6:26250269-26250527(-)$1	1	130	167	75.7540
((((.....((((((....))))))........))))	chr6:26217501-26217742(+)$1	1	134	171	81.5737
((.......((((((....))))))........))..	chr6:26200092-26200300(+)$1	1	94	131	78.1311
.........))))...)))))))).))))........	chr6:27114050-27114338(-)$1	1	169	206	68.6229
(((..((.(((((((((((.((((.......))))..	chr6:27861562-27861766(+)$1	1	76	113	75.1803

#PSSM
A : 0.40	C : 0.29	G : 0.22	U : 0.06	
A : 0.80	U : 0.09	G : 0.04	C : 0.04	
A : 0.54	C : 0.21	U : 0.19	G : 0.04	
C : 0.49	A : 0.34	U : 0.16	
C : 0.85	A : 0.06	U : 0.04	G : 0.03	
C : 0.91	A : 0.08	
A : 1.00	
A : 1.00	
A : 0.93	C : 0.06	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 0.83	A : 0.14	U : 0.01	
A : 1.00	
G : 1.00	
A : 0.95	G : 0.04	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 0.98	A : 0.01	
C : 0.65	U : 0.32	G : 0.01	
C : 0.72	U : 0.24	A : 0.03	
A : 1.00	
C : 0.67	A : 0.14	G : 0.11	U : 0.06	
A : 0.31	G : 0.24	U : 0.22	C : 0.21	
U : 0.59	A : 0.18	C : 0.16	G : 0.06	
U : 0.60	A : 0.18	C : 0.14	G : 0.06	
U : 0.75	C : 0.14	A : 0.08	G : 0.01	
U : 0.67	C : 0.22	A : 0.04	G : 0.04	
C : 0.83	U : 0.11	A : 0.04	

#score	4428.868852459017
#seq	61
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_CDS_m1_run2.nuc.txt

#NT
AGCGCUGC	chr22:20073378-20073640(+)$1	262	191	199	17.8541
AGCGCUGC	chr12:62997009-62997281(+)$1	272	40	48	17.8541
AGGGCUCC	chr7:150935484-150935694(+)$1	210	99	107	15.4583
AGGUCUGC	chr3:49050518-49050775(+)$1	257	14	22	14.6250
AGCGCUGC	chr12:62996887-62997129(+)$1	242	162	170	17.8541
AGGGCUGC	chr7:150935327-150935617(+)$1	290	132	140	19.4166
AGGGCGGC	chr5:154135498-154135746(+)$1	248	99	107	15.6666
AGCGCUGC	chr9:139564582-139564827(+)$1	245	77	85	17.8541
AGGGCGGC	chr19:917430-917681(+)$1	251	40	48	15.6666
AGAGCUGC	chr22:20073777-20074035(+)$1	258	85	93	16.6041
AGCGCUGC	chr22:20073440-20073661(+)$1	221	129	137	17.8541
AGCGCUGC	chr9:139564627-139564843(+)$1	216	32	40	17.8541
AGCGCUGC	chr9:139564522-139564782(+)$1	260	137	145	17.8541
AGGGCGGC	chr1:248020672-248020920(+)$1	248	27	35	15.6666
AGGGCUCC	chr7:150935497-150935708(+)$1	211	86	94	15.4583
AGAGCUGC	chr22:20073731-20073977(+)$1	246	131	139	16.6041
AGGGCCGC	chr14:105267569-105267823(+)$1	254	218	226	15.6666
AGGGCUGC	chr7:150935266-150935514(+)$1	248	193	201	19.4166
CGGGCUGC	chr9:101558577-101558792(-)$1	215	30	38	15.6666
AGCGCUGC	chr22:20073523-20073732(+)$1	209	46	54	17.8541
AGGGCUCC	chr19:46522399-46522676(+)$1	277	205	213	15.4583
AUGGCUGC	chr19:44096570-44096858(-)$1	288	140	148	14.8333
AGGGCCGC	chr22:20073654-20073903(+)$1	249	76	84	15.6666
AGGGCUGC	chr7:150935432-150935656(+)$1	224	27	35	19.4166
AGGGCCGC	chr22:20073593-20073819(+)$1	226	137	145	15.6666
AGGGCUGG	chr9:140006577-140006827(-)$1	250	143	151	14.6250
CGGGCUGC	chr9:101558619-101558833(-)$1	214	71	79	15.6666
AGCGCUGC	chr22:20073516-20073723(+)$1	207	53	61	17.8541
AGGGCCGC	chr22:20073619-20073849(+)$1	230	111	119	15.6666
ACGGCUGC	chr17:8108163-8108386(-)$1	223	104	112	14.9375
UGGGCUGC	chr19:40741696-40741934(-)$1	238	108	116	15.2500
ACGGCUGC	chr17:8108202-8108422(-)$1	220	140	148	14.9375
CGGGCUGC	chr9:101558600-101558819(-)$1	219	57	65	15.6666
AGCGCUGC	chr17:46655280-46655515(-)$1	235	156	164	17.8541
AGAGCUGC	chr22:20073835-20074067(+)$1	232	27	35	16.6041
AGGGCUAC	chr3:49055857-49056129(-)$1	272	2	10	15.1458
AGCGCUGC	chr22:20073462-20073716(+)$1	254	107	115	17.8541
GGGGCUGC	chr19:813520-813749(+)$1	229	114	122	15.2500
CGGGCUGC	chr9:101558592-101558800(-)$1	208	38	46	15.6666
AGGGCUUC	chr19:2270306-2270559(+)$1	253	183	191	15.1458
AGGGCUGC	chr7:150935456-150935682(+)$1	226	3	11	19.4166
AGCGCUGC	chr9:139564643-139564880(+)$1	237	16	24	17.8541
AGGGCUCC	chr7:150935513-150935736(+)$1	223	70	78	15.4583
CGGGCUGC	chr9:101558633-101558849(-)$1	216	87	95	15.6666
AGCGCUGC	chr12:62996797-62997070(+)$1	273	252	260	17.8541
AGCGCUGC	chr22:20073532-20073758(+)$1	226	37	45	17.8541
AGCGCUGC	chr9:139564511-139564722(+)$1	211	148	156	17.8541

#otherMatches

#Struct PSSM
RJJJJJJJ	chr19:917326-917630(+)$1	304	144	152	15.6666
2ccc22dd	chr22:20073378-20073640(+)$1	262	191	199	17.8541
fffeeeee	chr12:62997009-62997281(+)$1	272	40	48	17.8541
fffffccc	chr7:150935484-150935694(+)$1	210	99	107	15.4583
#eeeeeoo	chr3:49050518-49050775(+)$1	257	14	22	14.6250
]=======	chr12:62996887-62997129(+)$1	242	162	170	17.8541
ddd]eeee	chr7:150935327-150935617(+)$1	290	132	140	19.4166
{BB{IIII	chr5:154135498-154135746(+)$1	248	99	107	15.6666
========	chr9:139564582-139564827(+)$1	245	77	85	17.8541
RJJJJJJJ	chr19:917430-917681(+)$1	251	40	48	15.6666
ffffff:D	chr22:20073777-20074035(+)$1	258	85	93	16.6041
2ccc22dd	chr22:20073440-20073661(+)$1	221	129	137	17.8541
========	chr9:139564627-139564843(+)$1	216	32	40	17.8541
b22ccc]a	chr9:139564522-139564782(+)$1	260	137	145	17.8541
[ddddddd	chr1:248020672-248020920(+)$1	248	27	35	15.6666
fffffccc	chr7:150935497-150935708(+)$1	211	86	94	15.4583
]bb]gggg	chr22:20073731-20073977(+)$1	246	131	139	16.6041
ddd]bbFF	chr14:105267569-105267823(+)$1	254	218	226	15.6666
ddd]eeee	chr7:150935266-150935514(+)$1	248	193	201	19.4166
c!!=====	chr9:101558577-101558792(-)$1	215	30	38	15.6666
^^^^^^^^	chr22:20073523-20073732(+)$1	209	46	54	17.8541
fffmmmmf	chr19:46522399-46522676(+)$1	277	205	213	15.4583
ffffff22	chr19:44096570-44096858(-)$1	288	140	148	14.8333
:dddd[cc	chr22:20073654-20073903(+)$1	249	76	84	15.6666
eeemmmme	chr7:150935432-150935656(+)$1	224	27	35	19.4166
eeeebb::	chr22:20073593-20073819(+)$1	226	137	145	15.6666
ccceeeee	chr9:140006577-140006827(-)$1	250	143	151	14.6250
c!!=====	chr9:101558619-101558833(-)$1	214	71	79	15.6666
:::eeeee	chr22:20073516-20073723(+)$1	207	53	61	17.8541
eeeebb::	chr22:20073619-20073849(+)$1	230	111	119	15.6666
""eeeee!	chr17:8108163-8108386(-)$1	223	104	112	14.9375
gggggccc	chr19:40741696-40741934(-)$1	238	108	116	15.2500
d]ffffff	chr17:8108202-8108422(-)$1	220	140	148	14.9375
c!!=====	chr9:101558600-101558819(-)$1	219	57	65	15.6666
HHHHHHHH	chr17:46655280-46655515(-)$1	235	156	164	17.8541
ffffffbb	chr22:20073835-20074067(+)$1	232	27	35	16.6041
BB{BB:::	chr3:49055857-49056129(-)$1	272	2	10	15.1458
2ccc22dd	chr22:20073462-20073716(+)$1	254	107	115	17.8541
g22eeeee	chr19:813520-813749(+)$1	229	114	122	15.2500
c!!=====	chr9:101558592-101558800(-)$1	208	38	46	15.6666
HHHHH:::	chr19:2270306-2270559(+)$1	253	183	191	15.1458
DDDD{A{D	chr7:150935456-150935682(+)$1	226	3	11	19.4166
::::DDDD	chr9:139564643-139564880(+)$1	237	16	24	17.8541
fffffccc	chr7:150935513-150935736(+)$1	223	70	78	15.4583
c!!=====	chr9:101558633-101558849(-)$1	216	87	95	15.6666
]=======	chr12:62996797-62997070(+)$1	273	252	260	17.8541
^^^^^^^^	chr22:20073532-20073758(+)$1	226	37	45	17.8541
========	chr9:139564511-139564722(+)$1	211	148	156	17.8541

#DB
.(((((((	chr19:917326-917630(+)$1	1	144	152	15.6666
.)))..))	chr22:20073378-20073640(+)$1	1	191	199	17.8541
))))))))	chr12:62997009-62997281(+)$1	1	40	48	17.8541
))))))))	chr7:150935484-150935694(+)$1	1	99	107	15.4583
.(((((..	chr3:49050518-49050775(+)$1	1	14	22	14.6250
.)))))))	chr12:62996887-62997129(+)$1	1	162	170	17.8541
))).))))	chr7:150935327-150935617(+)$1	1	132	140	19.4166
.((.((((	chr5:154135498-154135746(+)$1	1	99	107	15.6666
))))))))	chr9:139564582-139564827(+)$1	1	77	85	17.8541
.(((((((	chr19:917430-917681(+)$1	1	40	48	15.6666
)))))).)	chr22:20073777-20074035(+)$1	1	85	93	16.6041
.)))..))	chr22:20073440-20073661(+)$1	1	129	137	17.8541
))))))))	chr9:139564627-139564843(+)$1	1	32	40	17.8541
)..))).)	chr9:139564522-139564782(+)$1	1	137	145	17.8541
.(((((((	chr1:248020672-248020920(+)$1	1	27	35	15.6666
))))))))	chr7:150935497-150935708(+)$1	1	86	94	15.4583
.)).))))	chr22:20073731-20073977(+)$1	1	131	139	16.6041
))).))))	chr14:105267569-105267823(+)$1	1	218	226	15.6666
))).))))	chr7:150935266-150935514(+)$1	1	193	201	19.4166
(..(((((	chr9:101558577-101558792(-)$1	1	30	38	15.6666
........	chr22:20073523-20073732(+)$1	1	46	54	17.8541
(((....)	chr19:46522399-46522676(+)$1	1	205	213	15.4583
))))))..	chr19:44096570-44096858(-)$1	1	140	148	14.8333
.((((.((	chr22:20073654-20073903(+)$1	1	76	84	15.6666
(((....)	chr7:150935432-150935656(+)$1	1	27	35	19.4166
))))))..	chr22:20073593-20073819(+)$1	1	137	145	15.6666
))))))))	chr9:140006577-140006827(-)$1	1	143	151	14.6250
(..(((((	chr9:101558619-101558833(-)$1	1	71	79	15.6666
...(((((	chr22:20073516-20073723(+)$1	1	53	61	17.8541
))))))..	chr22:20073619-20073849(+)$1	1	111	119	15.6666
..(((((.	chr17:8108163-8108386(-)$1	1	104	112	14.9375
))))))))	chr19:40741696-40741934(-)$1	1	108	116	15.2500
).))))))	chr17:8108202-8108422(-)$1	1	140	148	14.9375
(..(((((	chr9:101558600-101558819(-)$1	1	57	65	15.6666
))))))))	chr17:46655280-46655515(-)$1	1	156	164	17.8541
))))))))	chr22:20073835-20074067(+)$1	1	27	35	16.6041
((.((...	chr3:49055857-49056129(-)$1	1	2	10	15.1458
.)))..))	chr22:20073462-20073716(+)$1	1	107	115	17.8541
)..)))))	chr19:813520-813749(+)$1	1	114	122	15.2500
(..(((((	chr9:101558592-101558800(-)$1	1	38	46	15.6666
(((((...	chr19:2270306-2270559(+)$1	1	183	191	15.1458
((((.(.(	chr7:150935456-150935682(+)$1	1	3	11	19.4166
....((((	chr9:139564643-139564880(+)$1	1	16	24	17.8541
))))))))	chr7:150935513-150935736(+)$1	1	70	78	15.4583
(..(((((	chr9:101558633-101558849(-)$1	1	87	95	15.6666
.)))))))	chr12:62996797-62997070(+)$1	1	252	260	17.8541
........	chr22:20073532-20073758(+)$1	1	37	45	17.8541
))))))))	chr9:139564511-139564722(+)$1	1	148	156	17.8541

#PSSM
A : 0.85	C : 0.10	U : 0.02	G : 0.02	
G : 0.93	C : 0.04	U : 0.02	
G : 0.62	C : 0.31	A : 0.06	
G : 0.97	U : 0.02	
C : 1.00	
U : 0.83	G : 0.08	C : 0.08	
G : 0.87	C : 0.08	A : 0.02	U : 0.02	
C : 0.97	G : 0.02	

#score	795.541666666667
#seq	48
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_CDS_m2_run2.nuc.txt

#NT
GUGGG	chr10:49659492-49659801(-)$1	309	11	16	15.0000
GUGGG	chr16:11981330-11981605(-)$1	275	59	64	15.0000
guggg	chr2:54197770-54198041(-)$1	271	65	70	15.0000
GUGGG	chr5:126889444-126889738(+)$1	294	156	161	15.0000
GUGGG	chr6:24720015-24720250(-)$1	235	0	5	15.0000
GUGGG	chr16:69165154-69165468(-)$1	314	36	41	15.0000
GUGGG	chr17:73314702-73314972(-)$1	270	192	197	15.0000
GUGGG	chr22:20110048-20110318(+)$1	270	249	254	15.0000
GUGGG	chr22:39131168-39131454(-)$1	286	52	57	15.0000
GUGGG	chr11:126146221-126146452(+)$1	231	206	211	15.0000
GUGGG	chr11:62482646-62482883(-)$1	237	210	215	15.0000
GUGGG	chr6:24719973-24720215(-)$1	242	155	160	15.0000
GUGGG	chr16:2867275-2867541(+)$1	266	102	107	15.0000
guggg	chr11:2405685-2406015(+)$1	330	9	14	15.0000
GUGGG	chr11:126146252-126146497(+)$1	245	175	180	15.0000
GUGGG	chr19:45912810-45913092(+)$1	282	240	245	15.0000
GUGGG	chr14:105235803-105236125(-)$1	322	44	49	15.0000
GUGGG	chr1:109473988-109474249(-)$1	261	196	201	15.0000
GUGGG	chr12:132402960-132403244(+)$1	284	3	8	15.0000
GUGGG	chr17:79396527-79396785(+)$1	258	108	113	15.0000
guggg	chr12:122186052-122186352(+)$1	300	11	16	15.0000
GUGGG	chr7:77166715-77166997(+)$1	282	0	5	15.0000
GUGGG	chr14:69928301-69928547(+)$1	246	236	241	15.0000
GUGGG	chr19:42752572-42752836(-)$1	264	62	67	15.0000
guggg	chr5:137688423-137688669(+)$1	246	17	22	15.0000
guggg	chr19:47778067-47778305(+)$1	238	41	46	15.0000
GUGGG	chr2:242839113-242839469(+)$1	356	110	115	15.0000
GUGGG	chr7:128607277-128607534(-)$1	257	5	10	15.0000
gugGG	chr11:126146110-126146397(+)$1	287	97	102	15.0000
GUGGG	chr11:62292794-62293048(-)$1	254	190	195	15.0000
guggg	chr15:38776641-38776895(+)$1	254	22	27	15.0000
GUGGG	chr6:32157433-32157761(-)$1	328	133	138	15.0000
guggg	chr15:38776583-38776805(+)$1	222	23	28	15.0000
GUGGG	chr1:28176883-28177200(+)$1	317	95	100	15.0000
GUGGG	chr12:132401813-132402067(+)$1	254	21	26	15.0000
GUGGG	chr19:5130925-5131211(+)$1	286	102	107	15.0000
GUGGG	chr21:46954417-46954715(-)$1	298	21	26	15.0000
guggg	chr12:133295179-133295465(+)$1	286	5	10	15.0000
GUGGG	chr5:137688345-137688597(+)$1	252	20	25	15.0000
GUGGG	chr15:35271699-35271985(-)$1	286	0	5	15.0000
GUGGG	chr12:132402869-132403160(+)$1	291	94	99	15.0000
GUGGG	chr8:145729949-145730203(-)$1	254	92	97	15.0000
guggg	chr19:1555249-1555530(-)$1	281	13	18	15.0000
GUGGG	chr19:7705434-7705718(+)$1	284	29	34	15.0000
GUGGG	chr4:52709720-52709983(+)$1	263	77	82	15.0000
GUGGG	chr8:145730527-145730791(-)$1	264	87	92	15.0000
GUGGG	chr19:2270300-2270560(+)$1	260	105	110	15.0000
GUGGG	chr22:39917442-39917683(+)$1	241	44	49	15.0000
GUGGG	chr19:2270531-2270772(+)$1	241	92	97	15.0000
GUGGG	chr19:3530587-3530907(+)$1	320	250	255	15.0000
GUGGG	chr7:24690015-24690277(+)$1	262	175	180	15.0000
guggg	chr19:1592529-1592779(-)$1	250	94	99	15.0000
GUGGG	chr16:448890-449114(+)$1	224	45	50	15.0000
GUGGG	chr19:18653591-18653870(-)$1	279	25	30	15.0000
GUGGG	chr15:41562695-41562914(+)$1	219	174	179	15.0000
GUGGG	chr1:205718996-205719247(-)$1	251	70	75	15.0000
GUGGG	chr19:49841154-49841502(-)$1	348	74	79	15.0000
GUGGG	chr8:30669762-30670091(-)$1	329	28	33	15.0000
GUGGG	chr10:103589514-103589751(-)$1	237	167	172	15.0000
guggg	chr21:47731339-47731732(-)$1	393	0	5	15.0000
GUGGG	chr17:79826291-79826563(-)$1	272	50	55	15.0000
GUGGG	chr16:447772-448041(+)$1	269	241	246	15.0000
guggg	chr2:54197716-54197970(-)$1	254	16	21	15.0000

#otherMatches

#Struct PSSM
mmmmc	chr17:55333992-55334256(+)$1	264	66	71	15.0000
GGGGG	chr10:49659492-49659801(-)$1	309	11	16	15.0000
GGGGG	chr16:11981330-11981605(-)$1	275	59	64	15.0000
]ccc]	chr2:54197770-54198041(-)$1	271	65	70	15.0000
CCddd	chr5:126889444-126889738(+)$1	294	156	161	15.0000
eeeee	chr6:24720015-24720250(-)$1	235	0	5	15.0000
]dddd	chr16:69165154-69165468(-)$1	314	36	41	15.0000
===II	chr17:73314702-73314972(-)$1	270	192	197	15.0000
DDFFF	chr22:20110048-20110318(+)$1	270	249	254	15.0000
!a[ee	chr22:39131168-39131454(-)$1	286	52	57	15.0000
hhhhh	chr11:126146221-126146452(+)$1	231	206	211	15.0000
GGGGc	chr11:62482646-62482883(-)$1	237	210	215	15.0000
eeFFF	chr6:24719973-24720215(-)$1	242	155	160	15.0000
eeeee	chr16:2867275-2867541(+)$1	266	102	107	15.0000
ff(((	chr11:2405685-2406015(+)$1	330	9	14	15.0000
hhhhh	chr11:126146252-126146497(+)$1	245	175	180	15.0000
33a]e	chr19:45912810-45913092(+)$1	282	240	245	15.0000
HHHHH	chr14:105235803-105236125(-)$1	322	44	49	15.0000
eeeee	chr1:109473988-109474249(-)$1	261	196	201	15.0000
eeeee	chr12:132402960-132403244(+)$1	284	3	8	15.0000
}CCCD	chr17:79396527-79396785(+)$1	258	108	113	15.0000
ddd##	chr12:122186052-122186352(+)$1	300	11	16	15.0000
:::BB	chr7:77166715-77166997(+)$1	282	0	5	15.0000
fff22	chr14:69928301-69928547(+)$1	246	236	241	15.0000
fffhh	chr19:42752572-42752836(-)$1	264	62	67	15.0000
bb[a"	chr5:137688423-137688669(+)$1	246	17	22	15.0000
HHHHH	chr19:47778067-47778305(+)$1	238	41	46	15.0000
FFFFF	chr2:242839113-242839469(+)$1	356	110	115	15.0000
GGGGG	chr7:128607277-128607534(-)$1	257	5	10	15.0000
eeee[	chr11:126146110-126146397(+)$1	287	97	102	15.0000
ee]cc	chr11:62292794-62293048(-)$1	254	190	195	15.0000
:::::	chr15:38776641-38776895(+)$1	254	22	27	15.0000
bb[cc	chr6:32157433-32157761(-)$1	328	133	138	15.0000
:::::	chr15:38776583-38776805(+)$1	222	23	28	15.0000
GGGG{	chr1:28176883-28177200(+)$1	317	95	100	15.0000
[aooo	chr12:132401813-132402067(+)$1	254	21	26	15.0000
[dddd	chr19:5130925-5131211(+)$1	286	102	107	15.0000
b!!dd	chr21:46954417-46954715(-)$1	298	21	26	15.0000
JJJJJ	chr12:133295179-133295465(+)$1	286	5	10	15.0000
FF{DD	chr5:137688345-137688597(+)$1	252	20	25	15.0000
:EEEE	chr15:35271699-35271985(-)$1	286	0	5	15.0000
EEEEE	chr12:132402869-132403160(+)$1	291	94	99	15.0000
JJJJJ	chr8:145729949-145730203(-)$1	254	92	97	15.0000
dd!!b	chr19:1555249-1555530(-)$1	281	13	18	15.0000
HHHHH	chr19:7705434-7705718(+)$1	284	29	34	15.0000
cc[an	chr4:52709720-52709983(+)$1	263	77	82	15.0000
F{DDD	chr8:145730527-145730791(-)$1	264	87	92	15.0000
d[ddd	chr19:2270300-2270560(+)$1	260	105	110	15.0000
e[ggg	chr22:39917442-39917683(+)$1	241	44	49	15.0000
FF}DD	chr19:2270531-2270772(+)$1	241	92	97	15.0000
eeeee	chr19:3530587-3530907(+)$1	320	250	255	15.0000
ddFFF	chr7:24690015-24690277(+)$1	262	175	180	15.0000
]a:::	chr19:1592529-1592779(-)$1	250	94	99	15.0000
KKDDD	chr16:448890-449114(+)$1	224	45	50	15.0000
bb[a[	chr19:18653591-18653870(-)$1	279	25	30	15.0000
iiiii	chr15:41562695-41562914(+)$1	219	174	179	15.0000
]bb22	chr1:205718996-205719247(-)$1	251	70	75	15.0000
EEEEE	chr19:49841154-49841502(-)$1	348	74	79	15.0000
$$$$$	chr8:30669762-30670091(-)$1	329	28	33	15.0000
=====	chr10:103589514-103589751(-)$1	237	167	172	15.0000
:a[cc	chr21:47731339-47731732(-)$1	393	0	5	15.0000
c[eee	chr17:79826291-79826563(-)$1	272	50	55	15.0000
]cccC	chr16:447772-448041(+)$1	269	241	246	15.0000
^^^^^	chr2:54197716-54197970(-)$1	254	16	21	15.0000

#DB
....)	chr17:55333992-55334256(+)$1	1	66	71	15.0000
(((((	chr10:49659492-49659801(-)$1	1	11	16	15.0000
(((((	chr16:11981330-11981605(-)$1	1	59	64	15.0000
.))).	chr2:54197770-54198041(-)$1	1	65	70	15.0000
))(((	chr5:126889444-126889738(+)$1	1	156	161	15.0000
(((((	chr6:24720015-24720250(-)$1	1	0	5	15.0000
.))))	chr16:69165154-69165468(-)$1	1	36	41	15.0000
)))))	chr17:73314702-73314972(-)$1	1	192	197	15.0000
)))))	chr22:20110048-20110318(+)$1	1	249	254	15.0000
.(.((	chr22:39131168-39131454(-)$1	1	52	57	15.0000
)))))	chr11:126146221-126146452(+)$1	1	206	211	15.0000
))))(	chr11:62482646-62482883(-)$1	1	210	215	15.0000
)))))	chr6:24719973-24720215(-)$1	1	155	160	15.0000
(((((	chr16:2867275-2867541(+)$1	1	102	107	15.0000
((...	chr11:2405685-2406015(+)$1	1	9	14	15.0000
)))))	chr11:126146252-126146497(+)$1	1	175	180	15.0000
..).)	chr19:45912810-45913092(+)$1	1	240	245	15.0000
(((((	chr14:105235803-105236125(-)$1	1	44	49	15.0000
(((((	chr1:109473988-109474249(-)$1	1	196	201	15.0000
(((((	chr12:132402960-132403244(+)$1	1	3	8	15.0000
.)))(	chr17:79396527-79396785(+)$1	1	108	113	15.0000
(((..	chr12:122186052-122186352(+)$1	1	11	16	15.0000
...((	chr7:77166715-77166997(+)$1	1	0	5	15.0000
)))..	chr14:69928301-69928547(+)$1	1	236	241	15.0000
)))((	chr19:42752572-42752836(-)$1	1	62	67	15.0000
((.(.	chr5:137688423-137688669(+)$1	1	17	22	15.0000
(((((	chr19:47778067-47778305(+)$1	1	41	46	15.0000
(((((	chr2:242839113-242839469(+)$1	1	110	115	15.0000
(((((	chr7:128607277-128607534(-)$1	1	5	10	15.0000
((((.	chr11:126146110-126146397(+)$1	1	97	102	15.0000
)).))	chr11:62292794-62293048(-)$1	1	190	195	15.0000
.....	chr15:38776641-38776895(+)$1	1	22	27	15.0000
((.((	chr6:32157433-32157761(-)$1	1	133	138	15.0000
.....	chr15:38776583-38776805(+)$1	1	23	28	15.0000
((((.	chr1:28176883-28177200(+)$1	1	95	100	15.0000
.(...	chr12:132401813-132402067(+)$1	1	21	26	15.0000
.((((	chr19:5130925-5131211(+)$1	1	102	107	15.0000
(..((	chr21:46954417-46954715(-)$1	1	21	26	15.0000
(((((	chr12:133295179-133295465(+)$1	1	5	10	15.0000
((.((	chr5:137688345-137688597(+)$1	1	20	25	15.0000
.((((	chr15:35271699-35271985(-)$1	1	0	5	15.0000
(((((	chr12:132402869-132403160(+)$1	1	94	99	15.0000
(((((	chr8:145729949-145730203(-)$1	1	92	97	15.0000
((..(	chr19:1555249-1555530(-)$1	1	13	18	15.0000
(((((	chr19:7705434-7705718(+)$1	1	29	34	15.0000
((.(.	chr4:52709720-52709983(+)$1	1	77	82	15.0000
(.(((	chr8:145730527-145730791(-)$1	1	87	92	15.0000
(.(((	chr19:2270300-2270560(+)$1	1	105	110	15.0000
(.(((	chr22:39917442-39917683(+)$1	1	44	49	15.0000
)).))	chr19:2270531-2270772(+)$1	1	92	97	15.0000
(((((	chr19:3530587-3530907(+)$1	1	250	255	15.0000
)))))	chr7:24690015-24690277(+)$1	1	175	180	15.0000
.)...	chr19:1592529-1592779(-)$1	1	94	99	15.0000
..(((	chr16:448890-449114(+)$1	1	45	50	15.0000
((.(.	chr19:18653591-18653870(-)$1	1	25	30	15.0000
)))))	chr15:41562695-41562914(+)$1	1	174	179	15.0000
.))..	chr1:205718996-205719247(-)$1	1	70	75	15.0000
(((((	chr19:49841154-49841502(-)$1	1	74	79	15.0000
.....	chr8:30669762-30670091(-)$1	1	28	33	15.0000
)))))	chr10:103589514-103589751(-)$1	1	167	172	15.0000
.(.((	chr21:47731339-47731732(-)$1	1	0	5	15.0000
(.(((	chr17:79826291-79826563(-)$1	1	50	55	15.0000
.))))	chr16:447772-448041(+)$1	1	241	246	15.0000
.....	chr2:54197716-54197970(-)$1	1	16	21	15.0000

#PSSM
G : 0.79	g : 0.20	
U : 0.79	u : 0.20	
G : 0.79	g : 0.20	
G : 0.81	g : 0.18	
G : 0.81	g : 0.18	

#score	960.0
#seq	64
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_CDS_m3_run1.nuc.txt

#NT
CCAAAGUUUAAGAUGCCAGAGAUGCAUUUUAAGACUCCAAAGAUAUCCAUGCCAGAUAUUGACCUGAAUCUCACAGGUCCAAAAAUAAAAGGAGAUGUGGAUGUUACAGGCCCUAAGGUAGAGGGAGAUCUGAAAGGUCCUGAAGUUGACCUCAAAGGCCCCAAAGUGGACAUUGAUGUCCCAGAUGUUAAUGUUCAGGGUCCAGACUGGCACCUGAAGAUGCCCAAGAUGAAAAUGCCCA	chr11:62293176-62293447(-)$1	271	19	260	583.0000

#otherMatches

#Struct PSSM
::::::::::BB{FFFFFFeeeee"""ggggggga"""bb[annnnna]bb333a]ggggggg333eeeee:::eeeeebb''''''''eeeee####cccmmmmccc]eeeee999999999bb]eeeee:::eeeee[ddddccc[eeeee[cccddddoooooodddd88888888ccc]eeeee]ccc]dddd]eeeee:::FFFFFF}BB::::dddd%%%%%%bbqqqqqqqqbb	chr11:62292790-62293044(-)$1	254	0	241	583.0000
c%%%%%%iiiiiiiiipppppppiiiiiiiiicccdddd666666ccc:FFFFFF:::::ffffffpppppppffffff::::::::::ccc[ccc!!dddd[bb[ddddddddpppppppdddd333dddd]bb]dddd4444ccc22ccc::::eeeee$$$$$==============lll==============eeeee::::FFFFFF:eeeee!!bb!!bbrrrrrrrrrbb22bb	chr11:62293176-62293447(-)$1	271	19	260	583.0000

#DB
..........((.(((((((((((...((((((((...((.(.....).))...).)))))))...)))))...(((((((........(((((....(((....))).))))).........)).)))))...(((((.(((((((.(((((.(((((((......))))........))).))))).))).)))).)))))...)))))).))....((((......((........))	chr11:62292790-62293044(-)$1	1	0	241	583.0000
(......(((((((((.......))))))))))))))))......))).((((((.....((((((.......))))))..........(((.(((..((((.((.((((((((.......))))...)))).)).))))....)))..)))....(((((.....((((((((((((((...)))))))))))))))))))....)))))).(((((..((..((.........))..))	chr11:62293176-62293447(-)$1	1	19	260	583.0000

#PSSM
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	

#score	1166.0
#seq	2
#width	241
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_UTR_m1_run2.nuc.txt

#NT
GGUG	chr19:36229594-36229855(+)$1	261	0	4	11.9999
GGUG	chr4:74269911-74270144(+)$1	233	190	194	11.9999
GGUG	chr9:35072312-35072576(-)$1	264	70	74	11.9999
GGUG	chr3:184049157-184049443(+)$1	286	104	108	11.9999
GGUG	chr9:116997819-116998032(+)$1	213	46	50	11.9999
GGUG	chr6:146242303-146242622(-)$1	319	148	152	11.9999
GGUG	chr20:5100397-5100681(-)$1	284	23	27	11.9999
GGUG	chr2:231729570-231729844(+)$1	274	41	45	11.9999
GGUG	chr8:141889492-141889759(-)$1	267	210	214	11.9999
ggug	chr2:54197760-54198041(-)$1	281	64	68	11.9999
GGUG	chr15:28501248-28501518(-)$1	270	141	145	11.9999
GGUG	chr6:32948592-32948857(+)$1	265	168	172	11.9999
GGUG	chr1:146767277-146767512(+)$1	235	6	10	11.9999
GGUG	chr16:21854700-21854999(-)$1	299	230	234	11.9999
GGUG	chr3:184046322-184046618(+)$1	296	193	197	11.9999
GGUG	chr2:86712752-86713007(+)$1	255	15	19	11.9999
GGUG	chr17:75211194-75211453(+)$1	259	0	4	11.9999
GGUG	chr10:79580902-79581150(-)$1	248	22	26	11.9999
GGUG	chr16:2152759-2153071(-)$1	312	17	21	11.9999
GGUG	chr3:127842363-127842690(-)$1	327	137	141	11.9999
GGUG	chr2:170655293-170655589(+)$1	296	127	131	11.9999
GGUG	chr16:81040270-81040574(-)$1	304	97	101	11.9999
GGUG	chr7:156931546-156931873(+)$1	327	123	127	11.9999
GGUG	chr12:56552049-56552288(+)$1	239	44	48	11.9999
GGUG	chr3:49758744-49758996(+)$1	252	132	136	11.9999
GGUG	chr14:24679489-24679732(-)$1	243	217	221	11.9999
GGUG	chr4:83294796-83295083(-)$1	287	6	10	11.9999
GGUG	chr16:2143502-2143771(-)$1	269	61	65	11.9999
GGUG	chr2:209119637-209119894(-)$1	257	24	28	11.9999
GGUG	chr19:19303600-19304011(+)$1	411	94	98	11.9999
GGUG	chr14:90863424-90863682(+)$1	258	102	106	11.9999
GGUG	chr7:94285765-94285993(+)$1	228	80	84	11.9999
GGUG	chr2:232576509-232576723(+)$1	214	7	11	11.9999
GGUG	chr16:2147628-2147841(-)$1	213	112	116	11.9999
GGUG	chr16:2149765-2150019(-)$1	254	157	161	11.9999
GGUG	chr1:19444227-19444488(-)$1	261	141	145	11.9999
GGUG	chr2:28974794-28975051(+)$1	257	44	48	11.9999
GGUG	chr7:151851004-151851280(-)$1	276	248	252	11.9999
GGUG	chr12:123997812-123998086(-)$1	274	72	76	11.9999
GGUG	chr3:184052986-184053202(+)$1	216	121	125	11.9999
GGUG	chr9:139735095-139735332(+)$1	237	17	21	11.9999
GGUG	chr16:30712010-30712252(+)$1	242	1	5	11.9999
GGUG	chr1:22175289-22175512(-)$1	223	17	21	11.9999
GGUG	chr12:76953301-76953602(-)$1	301	44	48	11.9999
GGUG	chr6:41714911-41715213(-)$1	302	152	156	11.9999
ggug	chr10:697633-697887(-)$1	254	24	28	11.9999
GGUG	chr3:184039706-184039988(+)$1	282	189	193	11.9999
GGUG	chr1:156351969-156352191(+)$1	222	22	26	11.9999
GGUG	chr12:7052927-7053142(+)$1	215	175	179	11.9999
GGUG	chr5:75699069-75699318(+)$1	249	7	11	11.9999
GGUG	chr15:34517152-34517427(+)$1	275	97	101	11.9999
GGUG	chr1:153634715-153634971(-)$1	256	172	176	11.9999
GGUG	chr14:61201413-61201703(+)$1	290	34	38	11.9999
GGUG	chr6:158499113-158499346(+)$1	233	150	154	11.9999
GGUG	chr16:2143715-2144056(-)$1	341	46	50	11.9999
GGUG	chr2:150443501-150443759(-)$1	258	0	4	11.9999
GGUg	chr8:124780713-124781064(+)$1	351	192	196	11.9999
GGUG	chr3:184049018-184049229(+)$1	211	46	50	11.9999
GGUG	chr4:122617916-122618139(-)$1	223	10	14	11.9999
GGUG	chr1:179923940-179924305(+)$1	365	114	118	11.9999
GGUG	chr9:117046923-117047142(+)$1	219	133	137	11.9999
ggug	chr1:174968973-174969339(+)$1	366	60	64	11.9999
GGUG	chr2:209119561-209119837(-)$1	276	221	225	11.9999
GGUG	chr16:2139265-2139572(-)$1	307	301	305	11.9999
GGUG	chr16:2142886-2143171(-)$1	285	85	89	11.9999
GGUG	chr2:62932898-62933159(+)$1	261	12	16	11.9999
GGUG	chr19:10464509-10464769(-)$1	260	51	55	11.9999
GGUG	chr19:1980524-1980771(+)$1	247	141	145	11.9999
GGUG	chr2:191878150-191878429(-)$1	279	171	175	11.9999
GGUG	chr17:78237331-78237599(+)$1	268	245	249	11.9999
GGUG	chr12:123997886-123998189(-)$1	303	175	179	11.9999
GGUG	chr5:102455923-102456269(+)$1	346	18	22	11.9999
GGUG	chr9:113018592-113018888(-)$1	296	113	117	11.9999
GGUG	chr10:96305506-96305783(+)$1	277	157	161	11.9999
GGUG	chr11:63953576-63953843(+)$1	267	165	169	11.9999
GGUG	chr3:184049029-184049253(+)$1	224	35	39	11.9999
GGUG	chrX:153236504-153236764(-)$1	260	57	61	11.9999
GGUG	chr17:48797003-48797288(+)$1	285	24	28	11.9999
GGUG	chr6:32948858-32949149(+)$1	291	27	31	11.9999
GGUG	chr20:48807460-48807731(+)$1	271	121	125	11.9999
GGUG	chr5:139781379-139781629(+)$1	250	126	130	11.9999
GGUG	chr16:30711941-30712180(+)$1	239	9	13	11.9999
GGUG	chr2:201676580-201676814(+)$1	234	24	28	11.9999
GGUG	chr9:79934429-79934687(+)$1	258	6	10	11.9999
GGUG	chr12:49351013-49351329(-)$1	316	22	26	11.9999
GGUG	chr5:133968314-133968593(-)$1	279	128	132	11.9999
GGUG	chr16:2152396-2152633(-)$1	237	65	69	11.9999

#otherMatches

#Struct PSSM
ff[a	chr12:123998097-123998362(-)$1	265	14	18	11.9999
DDDD	chr19:36229594-36229855(+)$1	261	0	4	11.9999
||JJ	chr4:74269911-74270144(+)$1	233	190	194	11.9999
EEEE	chr9:35072312-35072576(-)$1	264	70	74	11.9999
ffff	chr3:184049157-184049443(+)$1	286	104	108	11.9999
{CCC	chr9:116997819-116998032(+)$1	213	46	50	11.9999
ffff	chr6:146242303-146242622(-)$1	319	148	152	11.9999
EEEH	chr20:5100397-5100681(-)$1	284	23	27	11.9999
dddd	chr2:231729570-231729844(+)$1	274	41	45	11.9999
hhhh	chr8:141889492-141889759(-)$1	267	210	214	11.9999
a]cc	chr2:54197760-54198041(-)$1	281	64	68	11.9999
AKKD	chr15:28501248-28501518(-)$1	270	141	145	11.9999
CC}C	chr6:32948592-32948857(+)$1	265	168	172	11.9999
DDDD	chr1:146767277-146767512(+)$1	235	6	10	11.9999
ffff	chr16:21854700-21854999(-)$1	299	230	234	11.9999
iiii	chr3:184046322-184046618(+)$1	296	193	197	11.9999
=lll	chr2:86712752-86713007(+)$1	255	15	19	11.9999
::::	chr17:75211194-75211453(+)$1	259	0	4	11.9999
dccc	chr10:79580902-79581150(-)$1	248	22	26	11.9999
iiii	chr16:2152759-2153071(-)$1	312	17	21	11.9999
hhhh	chr3:127842363-127842690(-)$1	327	137	141	11.9999
====	chr2:170655293-170655589(+)$1	296	127	131	11.9999
BB{J	chr16:81040270-81040574(-)$1	304	97	101	11.9999
eeee	chr7:156931546-156931873(+)$1	327	123	127	11.9999
ammm	chr12:56552049-56552288(+)$1	239	44	48	11.9999
ffff	chr3:49758744-49758996(+)$1	252	132	136	11.9999
GGGG	chr14:24679489-24679732(-)$1	243	217	221	11.9999
eeee	chr4:83294796-83295083(-)$1	287	6	10	11.9999
FFFF	chr16:2143502-2143771(-)$1	269	61	65	11.9999
{CCC	chr2:209119637-209119894(-)$1	257	24	28	11.9999
cddd	chr19:19303600-19304011(+)$1	411	94	98	11.9999
GDDD	chr14:90863424-90863682(+)$1	258	102	106	11.9999
hhhh	chr7:94285765-94285993(+)$1	228	80	84	11.9999
mmmm	chr2:232576509-232576723(+)$1	214	7	11	11.9999
d::f	chr16:2147628-2147841(-)$1	213	112	116	11.9999
====	chr16:2149765-2150019(-)$1	254	157	161	11.9999
dd[b	chr1:19444227-19444488(-)$1	261	141	145	11.9999
D{BB	chr2:28974794-28975051(+)$1	257	44	48	11.9999
EEEE	chr7:151851004-151851280(-)$1	276	248	252	11.9999
:::b	chr12:123997812-123998086(-)$1	274	72	76	11.9999
eeee	chr3:184052986-184053202(+)$1	216	121	125	11.9999
ccc[	chr9:139735095-139735332(+)$1	237	17	21	11.9999
a[cc	chr16:30712010-30712252(+)$1	242	1	5	11.9999
ffff	chr1:22175289-22175512(-)$1	223	17	21	11.9999
gggg	chr12:76953301-76953602(-)$1	301	44	48	11.9999
ffff	chr6:41714911-41715213(-)$1	302	152	156	11.9999
ffff	chr10:697633-697887(-)$1	254	24	28	11.9999
ddd]	chr3:184039706-184039988(+)$1	282	189	193	11.9999
dd[a	chr1:156351969-156352191(+)$1	222	22	26	11.9999
:::C	chr12:7052927-7053142(+)$1	215	175	179	11.9999
bqqq	chr5:75699069-75699318(+)$1	249	7	11	11.9999
EEEE	chr15:34517152-34517427(+)$1	275	97	101	11.9999
ccc2	chr1:153634715-153634971(-)$1	256	172	176	11.9999
ffff	chr14:61201413-61201703(+)$1	290	34	38	11.9999
[bbb	chr6:158499113-158499346(+)$1	233	150	154	11.9999
CC{F	chr16:2143715-2144056(-)$1	341	46	50	11.9999
bb[c	chr2:150443501-150443759(-)$1	258	0	4	11.9999
mmmm	chr8:124780713-124781064(+)$1	351	192	196	11.9999
rrrr	chr3:184049018-184049229(+)$1	211	46	50	11.9999
bb[f	chr4:122617916-122618139(-)$1	223	10	14	11.9999
EBB{	chr1:179923940-179924305(+)$1	365	114	118	11.9999
[a[f	chr9:117046923-117047142(+)$1	219	133	137	11.9999
C{EE	chr1:174968973-174969339(+)$1	366	60	64	11.9999
eee]	chr2:209119561-209119837(-)$1	276	221	225	11.9999
gggg	chr16:2139265-2139572(-)$1	307	301	305	11.9999
GGGG	chr16:2142886-2143171(-)$1	285	85	89	11.9999
EEE{	chr2:62932898-62933159(+)$1	261	12	16	11.9999
rrrr	chr19:10464509-10464769(-)$1	260	51	55	11.9999
dd]c	chr19:1980524-1980771(+)$1	247	141	145	11.9999
CCEE	chr2:191878150-191878429(-)$1	279	171	175	11.9999
____	chr17:78237331-78237599(+)$1	268	245	249	11.9999
ffff	chr12:123997886-123998189(-)$1	303	175	179	11.9999
HHHH	chr5:102455923-102456269(+)$1	346	18	22	11.9999
d555	chr9:113018592-113018888(-)$1	296	113	117	11.9999
fff:	chr10:96305506-96305783(+)$1	277	157	161	11.9999
444d	chr11:63953576-63953843(+)$1	267	165	169	11.9999
HHHH	chr3:184049029-184049253(+)$1	224	35	39	11.9999
ffff	chrX:153236504-153236764(-)$1	260	57	61	11.9999
lllf	chr17:48797003-48797288(+)$1	285	24	28	11.9999
booo	chr6:32948858-32949149(+)$1	291	27	31	11.9999
ccc]	chr20:48807460-48807731(+)$1	271	121	125	11.9999
DD{A	chr5:139781379-139781629(+)$1	250	126	130	11.9999
E:DD	chr16:30711941-30712180(+)$1	239	9	13	11.9999
:BB{	chr2:201676580-201676814(+)$1	234	24	28	11.9999
gggg	chr9:79934429-79934687(+)$1	258	6	10	11.9999
:::d	chr12:49351013-49351329(-)$1	316	22	26	11.9999
c]cc	chr5:133968314-133968593(-)$1	279	128	132	11.9999
EEEE	chr16:2152396-2152633(-)$1	237	65	69	11.9999

#DB
((.(	chr12:123998097-123998362(-)$1	1	14	18	11.9999
((((	chr19:36229594-36229855(+)$1	1	0	4	11.9999
..))	chr4:74269911-74270144(+)$1	1	190	194	11.9999
((((	chr9:35072312-35072576(-)$1	1	70	74	11.9999
))))	chr3:184049157-184049443(+)$1	1	104	108	11.9999
.(((	chr9:116997819-116998032(+)$1	1	46	50	11.9999
((((	chr6:146242303-146242622(-)$1	1	148	152	11.9999
((((	chr20:5100397-5100681(-)$1	1	23	27	11.9999
))))	chr2:231729570-231729844(+)$1	1	41	45	11.9999
))))	chr8:141889492-141889759(-)$1	1	210	214	11.9999
).))	chr2:54197760-54198041(-)$1	1	64	68	11.9999
(..(	chr15:28501248-28501518(-)$1	1	141	145	11.9999
)).)	chr6:32948592-32948857(+)$1	1	168	172	11.9999
((((	chr1:146767277-146767512(+)$1	1	6	10	11.9999
))))	chr16:21854700-21854999(-)$1	1	230	234	11.9999
))))	chr3:184046322-184046618(+)$1	1	193	197	11.9999
(...	chr2:86712752-86713007(+)$1	1	15	19	11.9999
....	chr17:75211194-75211453(+)$1	1	0	4	11.9999
)(((	chr10:79580902-79581150(-)$1	1	22	26	11.9999
((((	chr16:2152759-2153071(-)$1	1	17	21	11.9999
((((	chr3:127842363-127842690(-)$1	1	137	141	11.9999
))))	chr2:170655293-170655589(+)$1	1	127	131	11.9999
((.(	chr16:81040270-81040574(-)$1	1	97	101	11.9999
))))	chr7:156931546-156931873(+)$1	1	123	127	11.9999
(...	chr12:56552049-56552288(+)$1	1	44	48	11.9999
))))	chr3:49758744-49758996(+)$1	1	132	136	11.9999
))))	chr14:24679489-24679732(-)$1	1	217	221	11.9999
((((	chr4:83294796-83295083(-)$1	1	6	10	11.9999
((((	chr16:2143502-2143771(-)$1	1	61	65	11.9999
.(((	chr2:209119637-209119894(-)$1	1	24	28	11.9999
)(((	chr19:19303600-19304011(+)$1	1	94	98	11.9999
))))	chr14:90863424-90863682(+)$1	1	102	106	11.9999
))))	chr7:94285765-94285993(+)$1	1	80	84	11.9999
....	chr2:232576509-232576723(+)$1	1	7	11	11.9999
)..(	chr16:2147628-2147841(-)$1	1	112	116	11.9999
((((	chr16:2149765-2150019(-)$1	1	157	161	11.9999
((.(	chr1:19444227-19444488(-)$1	1	141	145	11.9999
(.((	chr2:28974794-28975051(+)$1	1	44	48	11.9999
))))	chr7:151851004-151851280(-)$1	1	248	252	11.9999
...(	chr12:123997812-123998086(-)$1	1	72	76	11.9999
((((	chr3:184052986-184053202(+)$1	1	121	125	11.9999
(((.	chr9:139735095-139735332(+)$1	1	17	21	11.9999
(.((	chr16:30712010-30712252(+)$1	1	1	5	11.9999
((((	chr1:22175289-22175512(-)$1	1	17	21	11.9999
))))	chr12:76953301-76953602(-)$1	1	44	48	11.9999
))))	chr6:41714911-41715213(-)$1	1	152	156	11.9999
((((	chr10:697633-697887(-)$1	1	24	28	11.9999
))).	chr3:184039706-184039988(+)$1	1	189	193	11.9999
((.(	chr1:156351969-156352191(+)$1	1	22	26	11.9999
...)	chr12:7052927-7053142(+)$1	1	175	179	11.9999
(...	chr5:75699069-75699318(+)$1	1	7	11	11.9999
))))	chr15:34517152-34517427(+)$1	1	97	101	11.9999
))).	chr1:153634715-153634971(-)$1	1	172	176	11.9999
))))	chr14:61201413-61201703(+)$1	1	34	38	11.9999
.(((	chr6:158499113-158499346(+)$1	1	150	154	11.9999
((.(	chr16:2143715-2144056(-)$1	1	46	50	11.9999
((.(	chr2:150443501-150443759(-)$1	1	0	4	11.9999
....	chr8:124780713-124781064(+)$1	1	192	196	11.9999
....	chr3:184049018-184049229(+)$1	1	46	50	11.9999
((.(	chr4:122617916-122618139(-)$1	1	10	14	11.9999
(((.	chr1:179923940-179924305(+)$1	1	114	118	11.9999
.(.(	chr9:117046923-117047142(+)$1	1	133	137	11.9999
(.((	chr1:174968973-174969339(+)$1	1	60	64	11.9999
))).	chr2:209119561-209119837(-)$1	1	221	225	11.9999
))))	chr16:2139265-2139572(-)$1	1	301	305	11.9999
((((	chr16:2142886-2143171(-)$1	1	85	89	11.9999
(((.	chr2:62932898-62933159(+)$1	1	12	16	11.9999
....	chr19:10464509-10464769(-)$1	1	51	55	11.9999
)).)	chr19:1980524-1980771(+)$1	1	141	145	11.9999
))))	chr2:191878150-191878429(-)$1	1	171	175	11.9999
....	chr17:78237331-78237599(+)$1	1	245	249	11.9999
((((	chr12:123997886-123998189(-)$1	1	175	179	11.9999
((((	chr5:102455923-102456269(+)$1	1	18	22	11.9999
)...	chr9:113018592-113018888(-)$1	1	113	117	11.9999
))).	chr10:96305506-96305783(+)$1	1	157	161	11.9999
...)	chr11:63953576-63953843(+)$1	1	165	169	11.9999
((((	chr3:184049029-184049253(+)$1	1	35	39	11.9999
))))	chrX:153236504-153236764(-)$1	1	57	61	11.9999
...)	chr17:48797003-48797288(+)$1	1	24	28	11.9999
(...	chr6:32948858-32949149(+)$1	1	27	31	11.9999
))).	chr20:48807460-48807731(+)$1	1	121	125	11.9999
((.(	chr5:139781379-139781629(+)$1	1	126	130	11.9999
(.((	chr16:30711941-30712180(+)$1	1	9	13	11.9999
.((.	chr2:201676580-201676814(+)$1	1	24	28	11.9999
((((	chr9:79934429-79934687(+)$1	1	6	10	11.9999
...(	chr12:49351013-49351329(-)$1	1	22	26	11.9999
).))	chr5:133968314-133968593(-)$1	1	128	132	11.9999
((((	chr16:2152396-2152633(-)$1	1	65	69	11.9999

#PSSM
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
U : 0.96	u : 0.03	
G : 0.95	g : 0.04	

#score	1055.9999999999998
#seq	88
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_CDS_m1_run1.nuc.txt

#NT
CUGC	chr2:216256413-216256637(-)$1	224	120	124	11.9999
CUGC	chr2:216259189-216259447(-)$1	258	93	97	11.9999
CUGC	chr2:21245678-21245959(-)$1	281	243	247	11.9999
CUGC	chr12:9242867-9243095(-)$1	228	85	89	11.9999
CUGC	chr12:9253668-9253891(-)$1	223	130	134	11.9999
CUGC	chr2:21236142-21236379(-)$1	237	119	123	11.9999
CUGC	chrX:132730367-132730643(-)$1	276	93	97	11.9999
CUGC	chr2:216288073-216288306(-)$1	233	220	224	11.9999
CUGC	chr1:8925406-8925641(-)$1	235	108	112	11.9999
CUGC	chr4:74310693-74310906(+)$1	213	134	138	11.9999
CUGC	chr4:74277722-74277929(+)$1	207	83	87	11.9999
CUGC	chr2:216286756-216286992(-)$1	236	39	43	11.9999
CUGC	chr2:21234090-21234324(-)$1	234	45	49	11.9999
CUGC	chr2:216251500-216251734(-)$1	234	92	96	11.9999
CUGC	chr1:116939121-116939365(+)$1	244	195	199	11.9999
CUGC	chr4:74283805-74284025(+)$1	220	70	74	11.9999
CUGC	chr22:39714966-39715194(-)$1	228	143	147	11.9999
CUGC	chr3:133473253-133473498(+)$1	245	41	45	11.9999
CUGC	chr2:21235935-21236182(-)$1	247	129	133	11.9999
CUGC	chr4:74307965-74308186(+)$1	221	109	113	11.9999
CUGC	chr2:21234974-21235227(-)$1	253	135	139	11.9999
CUGC	chr2:216252911-216253124(-)$1	213	105	109	11.9999
CUGC	chr3:133476512-133476717(+)$1	205	13	17	11.9999
CUGC	chr2:216272730-216272969(-)$1	239	164	168	11.9999
CUGC	chr2:216246892-216247136(-)$1	244	190	194	11.9999
CUGC	chr5:180670238-180670479(-)$1	241	14	18	11.9999
CUGC	chr2:216283985-216284198(-)$1	213	178	182	11.9999
CUGC	chr2:216259150-216259378(-)$1	228	24	28	11.9999
CUGC	chr2:21234166-21234410(-)$1	244	131	135	11.9999
CUGC	chr2:21228190-21228412(-)$1	222	179	183	11.9999
CUGC	chr4:74276015-74276222(+)$1	207	47	51	11.9999
CUGC	chrX:132887590-132887810(-)$1	220	52	56	11.9999
CUGC	chr1:116941142-116941375(+)$1	233	209	213	11.9999
CUGC	chr3:133475573-133475784(+)$1	211	139	143	11.9999
CUGC	chr3:133473238-133473448(+)$1	210	56	60	11.9999
CUGC	chr12:9243905-9244124(-)$1	219	61	65	11.9999
CUGC	chr2:216259273-216259516(-)$1	243	162	166	11.9999
CUGC	chr2:216295339-216295591(-)$1	252	37	41	11.9999
CUGC	chr2:216286861-216287066(-)$1	205	113	117	11.9999
CUGC	chr3:58106894-58107139(+)$1	245	22	26	11.9999
CUGC	chr2:21241767-21241979(-)$1	212	135	139	11.9999
CUGC	chr4:74280673-74280901(+)$1	228	124	128	11.9999
CUGC	chr15:72500897-72501182(-)$1	285	25	29	11.9999
CUGC	chr2:216238025-216238228(-)$1	203	4	8	11.9999
CUGC	chr2:21235161-21235398(-)$1	237	55	59	11.9999
CUGC	chr2:21250700-21250949(-)$1	249	215	219	11.9999
CUGC	chr4:74275026-74275236(+)$1	210	4	8	11.9999
CUGC	chr2:216230127-216230341(-)$1	214	67	71	11.9999
CUGC	chr2:216229576-216229807(-)$1	231	47	51	11.9999
CUGC	chr2:216248012-216248246(-)$1	234	24	28	11.9999
CUGC	chr2:216286840-216287061(-)$1	221	108	112	11.9999
CUGC	chr6:31963704-31963991(+)$1	287	16	20	11.9999
CUGC	chr2:21238268-21238479(-)$1	211	3	7	11.9999
CUGC	chr19:6696560-6696770(-)$1	210	28	32	11.9999
CUGC	chr6:160479844-160480079(+)$1	235	87	91	11.9999
CUGC	chr4:74318146-74318378(+)$1	232	42	46	11.9999
CUGC	chr4:74275071-74275294(+)$1	223	77	81	11.9999
CUGC	chr2:216230150-216230366(-)$1	216	92	96	11.9999
CUGC	chr4:74313078-74313280(+)$1	202	162	166	11.9999
CUGC	chr2:216288130-216288349(-)$1	219	4	8	11.9999
CUGC	chr2:21237875-21238121(-)$1	246	189	193	11.9999
CUGC	chr2:216239843-216240107(-)$1	264	11	15	11.9999
CUGC	chr2:216296558-216296782(-)$1	224	58	62	11.9999
CUGC	chr2:216283998-216284208(-)$1	210	188	192	11.9999
CUGC	chr2:216289747-216289960(-)$1	213	130	134	11.9999
CUGC	chr2:21245616-21245846(-)$1	230	130	134	11.9999
CUGC	chr2:216272949-216273168(-)$1	219	57	61	11.9999
CUGC	chr5:180670226-180670438(-)$1	212	124	128	11.9999
CUGC	chr2:216286792-216287029(-)$1	237	76	80	11.9999
CUGC	chr3:133475026-133475273(+)$1	247	58	62	11.9999
CUGC	chr2:21259967-21260225(-)$1	258	2	6	11.9999
CUGC	chr1:116943682-116943941(+)$1	259	11	15	11.9999
CUGC	chrX:132887834-132888059(-)$1	225	77	81	11.9999
CUGC	chrX:132887859-132888115(-)$1	256	133	137	11.9999
CUGC	chr2:21234210-21234439(-)$1	229	160	164	11.9999
CUGC	chr4:74318178-74318438(+)$1	260	10	14	11.9999
CUGC	chr6:31508793-31509034(-)$1	241	155	159	11.9999
CUGC	chr4:74307918-74308137(+)$1	219	156	160	11.9999
CUGC	chr13:45911522-45911754(-)$1	232	10	14	11.9999

#otherMatches

#Struct PSSM
eeee	chr2:21252524-21252757(-)$1	233	60	64	11.9999
::::	chr2:216256413-216256637(-)$1	224	120	124	11.9999
555g	chr2:216259189-216259447(-)$1	258	93	97	11.9999
DD}A	chr2:21245678-21245959(-)$1	281	243	247	11.9999
HHHH	chr12:9242867-9243095(-)$1	228	85	89	11.9999
ffff	chr12:9253668-9253891(-)$1	223	130	134	11.9999
uuuu	chr2:21236142-21236379(-)$1	237	119	123	11.9999
D{DD	chrX:132730367-132730643(-)$1	276	93	97	11.9999
DDDD	chr2:216288073-216288306(-)$1	233	220	224	11.9999
22bb	chr1:8925406-8925641(-)$1	235	108	112	11.9999
gggg	chr4:74310693-74310906(+)$1	213	134	138	11.9999
FKKD	chr4:74277722-74277929(+)$1	207	83	87	11.9999
dd%%	chr2:216286756-216286992(-)$1	236	39	43	11.9999
BBee	chr2:21234090-21234324(-)$1	234	45	49	11.9999
]eee	chr2:216251500-216251734(-)$1	234	92	96	11.9999
}GGG	chr1:116939121-116939365(+)$1	244	195	199	11.9999
D}EE	chr4:74283805-74284025(+)$1	220	70	74	11.9999
eeee	chr22:39714966-39715194(-)$1	228	143	147	11.9999
OA{D	chr3:133473253-133473498(+)$1	245	41	45	11.9999
::::	chr2:21235935-21236182(-)$1	247	129	133	11.9999
]ccc	chr4:74307965-74308186(+)$1	221	109	113	11.9999
::::	chr2:21234974-21235227(-)$1	253	135	139	11.9999
KKEE	chr2:216252911-216253124(-)$1	213	105	109	11.9999
ccc[	chr3:133476512-133476717(+)$1	205	13	17	11.9999
ccc!	chr2:216272730-216272969(-)$1	239	164	168	11.9999
ccc]	chr2:216246892-216247136(-)$1	244	190	194	11.9999
dddd	chr5:180670238-180670479(-)$1	241	14	18	11.9999
=[bb	chr2:216283985-216284198(-)$1	213	178	182	11.9999
mmbb	chr2:216259150-216259378(-)$1	228	24	28	11.9999
+++c	chr2:21234166-21234410(-)$1	244	131	135	11.9999
ffff	chr2:21228190-21228412(-)$1	222	179	183	11.9999
hhEE	chr4:74276015-74276222(+)$1	207	47	51	11.9999
eeee	chrX:132887590-132887810(-)$1	220	52	56	11.9999
bb::	chr1:116941142-116941375(+)$1	233	209	213	11.9999
JJJ:	chr3:133475573-133475784(+)$1	211	139	143	11.9999
dddl	chr3:133473238-133473448(+)$1	210	56	60	11.9999
&&bb	chr12:9243905-9244124(-)$1	219	61	65	11.9999
555g	chr2:216259273-216259516(-)$1	243	162	166	11.9999
ddd2	chr2:216295339-216295591(-)$1	252	37	41	11.9999
2eee	chr2:216286861-216287066(-)$1	205	113	117	11.9999
FFFB	chr3:58106894-58107139(+)$1	245	22	26	11.9999
DDD}	chr2:21241767-21241979(-)$1	212	135	139	11.9999
bmmm	chr4:74280673-74280901(+)$1	228	124	128	11.9999
HHHH	chr15:72500897-72501182(-)$1	285	25	29	11.9999
FFFF	chr2:216238025-216238228(-)$1	203	4	8	11.9999
ccc[	chr2:21235161-21235398(-)$1	237	55	59	11.9999
tttt	chr2:21250700-21250949(-)$1	249	215	219	11.9999
::bb	chr4:74275026-74275236(+)$1	210	4	8	11.9999
[bb"	chr2:216230127-216230341(-)$1	214	67	71	11.9999
EEEE	chr2:216229576-216229807(-)$1	231	47	51	11.9999
dddd	chr2:216248012-216248246(-)$1	234	24	28	11.9999
dd%%	chr2:216286840-216287061(-)$1	221	108	112	11.9999
eeee	chr6:31963704-31963991(+)$1	287	16	20	11.9999
dd[b	chr2:21238268-21238479(-)$1	211	3	7	11.9999
%%bb	chr19:6696560-6696770(-)$1	210	28	32	11.9999
::dd	chr6:160479844-160480079(+)$1	235	87	91	11.9999
JJJJ	chr4:74318146-74318378(+)$1	232	42	46	11.9999
ccco	chr4:74275071-74275294(+)$1	223	77	81	11.9999
[bb"	chr2:216230150-216230366(-)$1	216	92	96	11.9999
::::	chr4:74313078-74313280(+)$1	202	162	166	11.9999
ffff	chr2:216288130-216288349(-)$1	219	4	8	11.9999
eeeC	chr2:21237875-21238121(-)$1	246	189	193	11.9999
:CCC	chr2:216239843-216240107(-)$1	264	11	15	11.9999
====	chr2:216296558-216296782(-)$1	224	58	62	11.9999
=[bb	chr2:216283998-216284208(-)$1	210	188	192	11.9999
]ddd	chr2:216289747-216289960(-)$1	213	130	134	11.9999
CCCC	chr2:21245616-21245846(-)$1	230	130	134	11.9999
IIII	chr2:216272949-216273168(-)$1	219	57	61	11.9999
88gg	chr5:180670226-180670438(-)$1	212	124	128	11.9999
dd%%	chr2:216286792-216287029(-)$1	237	76	80	11.9999
"""b	chr3:133475026-133475273(+)$1	247	58	62	11.9999
:GGG	chr2:21259967-21260225(-)$1	258	2	6	11.9999
FFFF	chr1:116943682-116943941(+)$1	259	11	15	11.9999
mmmc	chrX:132887834-132888059(-)$1	225	77	81	11.9999
FFFF	chrX:132887859-132888115(-)$1	256	133	137	11.9999
eee:	chr2:21234210-21234439(-)$1	229	160	164	11.9999
JJJJ	chr4:74318178-74318438(+)$1	260	10	14	11.9999
JJJJ	chr6:31508793-31509034(-)$1	241	155	159	11.9999
HHHH	chr4:74307918-74308137(+)$1	219	156	160	11.9999
:ggg	chr13:45911522-45911754(-)$1	232	10	14	11.9999

#DB
((((	chr2:21252524-21252757(-)$1	1	60	64	11.9999
....	chr2:216256413-216256637(-)$1	1	120	124	11.9999
...)	chr2:216259189-216259447(-)$1	1	93	97	11.9999
)).)	chr2:21245678-21245959(-)$1	1	243	247	11.9999
((((	chr12:9242867-9243095(-)$1	1	85	89	11.9999
((((	chr12:9253668-9253891(-)$1	1	130	134	11.9999
....	chr2:21236142-21236379(-)$1	1	119	123	11.9999
(.((	chrX:132730367-132730643(-)$1	1	93	97	11.9999
))))	chr2:216288073-216288306(-)$1	1	220	224	11.9999
..))	chr1:8925406-8925641(-)$1	1	108	112	11.9999
))))	chr4:74310693-74310906(+)$1	1	134	138	11.9999
(..(	chr4:74277722-74277929(+)$1	1	83	87	11.9999
((..	chr2:216286756-216286992(-)$1	1	39	43	11.9999
((((	chr2:21234090-21234324(-)$1	1	45	49	11.9999
.)))	chr2:216251500-216251734(-)$1	1	92	96	11.9999
.)))	chr1:116939121-116939365(+)$1	1	195	199	11.9999
).))	chr4:74283805-74284025(+)$1	1	70	74	11.9999
))))	chr22:39714966-39715194(-)$1	1	143	147	11.9999
.(.(	chr3:133473253-133473498(+)$1	1	41	45	11.9999
....	chr2:21235935-21236182(-)$1	1	129	133	11.9999
.)))	chr4:74307965-74308186(+)$1	1	109	113	11.9999
....	chr2:21234974-21235227(-)$1	1	135	139	11.9999
..((	chr2:216252911-216253124(-)$1	1	105	109	11.9999
(((.	chr3:133476512-133476717(+)$1	1	13	17	11.9999
(((.	chr2:216272730-216272969(-)$1	1	164	168	11.9999
))).	chr2:216246892-216247136(-)$1	1	190	194	11.9999
((((	chr5:180670238-180670479(-)$1	1	14	18	11.9999
(.((	chr2:216283985-216284198(-)$1	1	178	182	11.9999
..))	chr2:216259150-216259378(-)$1	1	24	28	11.9999
...(	chr2:21234166-21234410(-)$1	1	131	135	11.9999
((((	chr2:21228190-21228412(-)$1	1	179	183	11.9999
))((	chr4:74276015-74276222(+)$1	1	47	51	11.9999
((((	chrX:132887590-132887810(-)$1	1	52	56	11.9999
))..	chr1:116941142-116941375(+)$1	1	209	213	11.9999
))).	chr3:133475573-133475784(+)$1	1	139	143	11.9999
(((.	chr3:133473238-133473448(+)$1	1	56	60	11.9999
..((	chr12:9243905-9244124(-)$1	1	61	65	11.9999
...)	chr2:216259273-216259516(-)$1	1	162	166	11.9999
))).	chr2:216295339-216295591(-)$1	1	37	41	11.9999
.)))	chr2:216286861-216287066(-)$1	1	113	117	11.9999
((((	chr3:58106894-58107139(+)$1	1	22	26	11.9999
))).	chr2:21241767-21241979(-)$1	1	135	139	11.9999
(...	chr4:74280673-74280901(+)$1	1	124	128	11.9999
((((	chr15:72500897-72501182(-)$1	1	25	29	11.9999
((((	chr2:216238025-216238228(-)$1	1	4	8	11.9999
(((.	chr2:21235161-21235398(-)$1	1	55	59	11.9999
....	chr2:21250700-21250949(-)$1	1	215	219	11.9999
..((	chr4:74275026-74275236(+)$1	1	4	8	11.9999
.((.	chr2:216230127-216230341(-)$1	1	67	71	11.9999
((((	chr2:216229576-216229807(-)$1	1	47	51	11.9999
((((	chr2:216248012-216248246(-)$1	1	24	28	11.9999
((..	chr2:216286840-216287061(-)$1	1	108	112	11.9999
((((	chr6:31963704-31963991(+)$1	1	16	20	11.9999
((.(	chr2:21238268-21238479(-)$1	1	3	7	11.9999
..((	chr19:6696560-6696770(-)$1	1	28	32	11.9999
..((	chr6:160479844-160480079(+)$1	1	87	91	11.9999
((((	chr4:74318146-74318378(+)$1	1	42	46	11.9999
(((.	chr4:74275071-74275294(+)$1	1	77	81	11.9999
.((.	chr2:216230150-216230366(-)$1	1	92	96	11.9999
....	chr4:74313078-74313280(+)$1	1	162	166	11.9999
((((	chr2:216288130-216288349(-)$1	1	4	8	11.9999
))))	chr2:21237875-21238121(-)$1	1	189	193	11.9999
.(((	chr2:216239843-216240107(-)$1	1	11	15	11.9999
))))	chr2:216296558-216296782(-)$1	1	58	62	11.9999
(.((	chr2:216283998-216284208(-)$1	1	188	192	11.9999
.)))	chr2:216289747-216289960(-)$1	1	130	134	11.9999
))))	chr2:21245616-21245846(-)$1	1	130	134	11.9999
((((	chr2:216272949-216273168(-)$1	1	57	61	11.9999
..))	chr5:180670226-180670438(-)$1	1	124	128	11.9999
((..	chr2:216286792-216287029(-)$1	1	76	80	11.9999
...(	chr3:133475026-133475273(+)$1	1	58	62	11.9999
.(((	chr2:21259967-21260225(-)$1	1	2	6	11.9999
((((	chr1:116943682-116943941(+)$1	1	11	15	11.9999
...)	chrX:132887834-132888059(-)$1	1	77	81	11.9999
))))	chrX:132887859-132888115(-)$1	1	133	137	11.9999
))).	chr2:21234210-21234439(-)$1	1	160	164	11.9999
((((	chr4:74318178-74318438(+)$1	1	10	14	11.9999
))))	chr6:31508793-31509034(-)$1	1	155	159	11.9999
))))	chr4:74307918-74308137(+)$1	1	156	160	11.9999
.(((	chr13:45911522-45911754(-)$1	1	10	14	11.9999

#PSSM
C : 0.99	
U : 0.99	
G : 0.99	
C : 0.99	

#score	959.9999999999995
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_UTR_m2_run1.nuc.txt

#NT
GCUGG	chr17:74099347-74099638(-)$1	291	212	217	14.9999
GCUGG	chr12:69991954-69992262(+)$1	308	237	242	14.9999
GCUGG	chr2:220251544-220251869(-)$1	325	199	204	14.9999
GCUGG	chr19:10505935-10506167(-)$1	232	160	165	14.9999
GCUGG	chr6:31924509-31924767(-)$1	258	207	212	14.9999
GCUGG	chr14:54418386-54418654(-)$1	268	117	122	14.9999
GCUGG	chr10:6131034-6131271(+)$1	237	40	45	14.9999
GCUGG	chr5:140048504-140048744(+)$1	240	76	81	14.9999
GCUGG	chr12:104350332-104350662(-)$1	330	56	61	14.9999
GCUGG	chr11:66391572-66391861(+)$1	289	12	17	14.9999
GCUGG	chr8:134266643-134266887(-)$1	244	225	230	14.9999
GCUGG	chr17:7126070-7126312(+)$1	242	2	7	14.9999
GCUGG	chr11:118892317-118892613(+)$1	296	187	192	14.9999
GCUGG	chr19:15757856-15758140(+)$1	284	54	59	14.9999
GCUGG	chr3:38167828-38168120(-)$1	292	116	121	14.9999
GCUGG	chr2:73471531-73471818(+)$1	287	155	160	14.9999
GCUGG	chr17:73872744-73872996(-)$1	252	149	154	14.9999
GCUGG	chr3:119153573-119153866(-)$1	293	67	72	14.9999
GCUGG	chr17:61911817-61912031(-)$1	214	185	190	14.9999
GCUGG	chr17:45727602-45727841(+)$1	239	153	158	14.9999
GCUGG	chr9:6805602-6805881(+)$1	279	154	159	14.9999
GCUGG	chr17:79864185-79864455(-)$1	270	70	75	14.9999
GCUGG	chr20:62289681-62289905(+)$1	224	37	42	14.9999
GCUGG	chr17:7127863-7128131(+)$1	268	119	124	14.9999
GCUGG	chr2:24307244-24307503(-)$1	259	148	153	14.9999
GCUGG	chr3:184102224-184102473(+)$1	249	120	125	14.9999
gcugg	chr16:89858788-89859027(-)$1	239	0	5	14.9999
GCUGG	chr17:2238566-2238802(-)$1	236	71	76	14.9999
GCUGG	chr17:78188460-78188707(-)$1	247	26	31	14.9999
GCUGG	chr14:74755269-74755531(-)$1	262	179	184	14.9999
GCUGG	chr4:77987387-77987669(-)$1	282	124	129	14.9999
GCUGG	chr12:124957493-124957781(-)$1	288	124	129	14.9999
GCUGG	chr5:140048544-140048764(+)$1	220	36	41	14.9999
GCUGG	chr6:32946019-32946269(+)$1	250	3	8	14.9999
GCUGG	chr17:40123810-40124055(+)$1	245	18	23	14.9999
GCUGG	chr14:23946562-23946907(+)$1	345	97	102	14.9999
GCUGG	chr17:17716161-17716421(-)$1	260	168	173	14.9999
GCUGG	chr3:47887038-47887322(+)$1	284	96	101	14.9999
GCUGG	chr16:18801122-18801387(-)$1	265	98	103	14.9999
GCUGG	chr7:1197704-1198017(-)$1	313	274	279	14.9999
GCUGG	chr17:7082307-7082568(-)$1	261	87	92	14.9999
GCUGG	chr1:109825470-109825758(-)$1	288	67	72	14.9999
gcugg	chr3:50102364-50102661(+)$1	297	5	10	14.9999
GCUGG	chr11:118923386-118923637(-)$1	251	151	156	14.9999
GCUGG	chr16:69362938-69363237(-)$1	299	156	161	14.9999
GCUGG	chr12:112229112-112229376(+)$1	264	48	53	14.9999
GCUGG	chr2:242590383-242590605(+)$1	222	154	159	14.9999
GCUGG	chr19:1271994-1272232(+)$1	238	140	145	14.9999
GCUGG	chr2:96991348-96991653(+)$1	305	196	201	14.9999
GCUGG	chr13:50571221-50571510(+)$1	289	160	165	14.9999
GCUGG	chr3:184046497-184046800(+)$1	303	109	114	14.9999
GCUGG	chr19:10505967-10506197(-)$1	230	190	195	14.9999
gcugg	chr3:38416483-38416757(+)$1	274	87	92	14.9999

#otherMatches

#Struct PSSM
::DDD	chr17:73811093-73811353(+)$1	260	4	9	14.9999
ppppf	chr17:74099347-74099638(-)$1	291	212	217	14.9999
ddd:e	chr12:69991954-69992262(+)$1	308	237	242	14.9999
!ccc[	chr2:220251544-220251869(-)$1	325	199	204	14.9999
ggggg	chr19:10505935-10506167(-)$1	232	160	165	14.9999
ggggg	chr6:31924509-31924767(-)$1	258	207	212	14.9999
77777	chr14:54418386-54418654(-)$1	268	117	122	14.9999
$$$$$	chr10:6131034-6131271(+)$1	237	40	45	14.9999
ccc22	chr5:140048504-140048744(+)$1	240	76	81	14.9999
[afff	chr12:104350332-104350662(-)$1	330	56	61	14.9999
::::h	chr11:66391572-66391861(+)$1	289	12	17	14.9999
ddmmm	chr8:134266643-134266887(-)$1	244	225	230	14.9999
FFFFF	chr17:7126070-7126312(+)$1	242	2	7	14.9999
fffff	chr11:118892317-118892613(+)$1	296	187	192	14.9999
CC{BB	chr19:15757856-15758140(+)$1	284	54	59	14.9999
mmeee	chr3:38167828-38168120(-)$1	292	116	121	14.9999
444bb	chr2:73471531-73471818(+)$1	287	155	160	14.9999
ccnnn	chr17:73872744-73872996(-)$1	252	149	154	14.9999
CC{CC	chr3:119153573-119153866(-)$1	293	67	72	14.9999
bb]cc	chr17:61911817-61912031(-)$1	214	185	190	14.9999
:ccc!	chr17:45727602-45727841(+)$1	239	153	158	14.9999
nnnnc	chr9:6805602-6805881(+)$1	279	154	159	14.9999
ccccc	chr17:79864185-79864455(-)$1	270	70	75	14.9999
eeeen	chr20:62289681-62289905(+)$1	224	37	42	14.9999
b:eee	chr17:7127863-7128131(+)$1	268	119	124	14.9999
mmmmc	chr2:24307244-24307503(-)$1	259	148	153	14.9999
]dddd	chr3:184102224-184102473(+)$1	249	120	125	14.9999
BB{DD	chr16:89858788-89859027(-)$1	239	0	5	14.9999
II:dd	chr17:2238566-2238802(-)$1	236	71	76	14.9999
CCeee	chr17:78188460-78188707(-)$1	247	26	31	14.9999
eeeee	chr14:74755269-74755531(-)$1	262	179	184	14.9999
d]eee	chr4:77987387-77987669(-)$1	282	124	129	14.9999
:eeee	chr12:124957493-124957781(-)$1	288	124	129	14.9999
d22ee	chr5:140048544-140048764(+)$1	220	36	41	14.9999
DDDKK	chr6:32946019-32946269(+)$1	250	3	8	14.9999
dddee	chr17:40123810-40124055(+)$1	245	18	23	14.9999
d[ddd	chr14:23946562-23946907(+)$1	345	97	102	14.9999
ccmmm	chr17:17716161-17716421(-)$1	260	168	173	14.9999
BBEEE	chr3:47887038-47887322(+)$1	284	96	101	14.9999
hhhdd	chr16:18801122-18801387(-)$1	265	98	103	14.9999
=====	chr7:1197704-1198017(-)$1	313	274	279	14.9999
ccc]c	chr17:7082307-7082568(-)$1	261	87	92	14.9999
occc3	chr1:109825470-109825758(-)$1	288	67	72	14.9999
DDD{C	chr3:50102364-50102661(+)$1	297	5	10	14.9999
mmmdd	chr11:118923386-118923637(-)$1	251	151	156	14.9999
dddd[	chr16:69362938-69363237(-)$1	299	156	161	14.9999
mmggg	chr12:112229112-112229376(+)$1	264	48	53	14.9999
bb[bb	chr2:242590383-242590605(+)$1	222	154	159	14.9999
cdddd	chr19:1271994-1272232(+)$1	238	140	145	14.9999
ddddm	chr2:96991348-96991653(+)$1	305	196	201	14.9999
EEE}C	chr13:50571221-50571510(+)$1	289	160	165	14.9999
ddd!!	chr3:184046497-184046800(+)$1	303	109	114	14.9999
22eee	chr19:10505967-10506197(-)$1	230	190	195	14.9999
eeee:	chr3:38416483-38416757(+)$1	274	87	92	14.9999

#DB
..(((	chr17:73811093-73811353(+)$1	1	4	9	14.9999
....)	chr17:74099347-74099638(-)$1	1	212	217	14.9999
))).(	chr12:69991954-69992262(+)$1	1	237	242	14.9999
.(((.	chr2:220251544-220251869(-)$1	1	199	204	14.9999
(((((	chr19:10505935-10506167(-)$1	1	160	165	14.9999
(((((	chr6:31924509-31924767(-)$1	1	207	212	14.9999
.....	chr14:54418386-54418654(-)$1	1	117	122	14.9999
.....	chr10:6131034-6131271(+)$1	1	40	45	14.9999
)))..	chr5:140048504-140048744(+)$1	1	76	81	14.9999
.((((	chr12:104350332-104350662(-)$1	1	56	61	14.9999
....(	chr11:66391572-66391861(+)$1	1	12	17	14.9999
((...	chr8:134266643-134266887(-)$1	1	225	230	14.9999
(((((	chr17:7126070-7126312(+)$1	1	2	7	14.9999
)))))	chr11:118892317-118892613(+)$1	1	187	192	14.9999
((.((	chr19:15757856-15758140(+)$1	1	54	59	14.9999
..)))	chr3:38167828-38168120(-)$1	1	116	121	14.9999
...))	chr2:73471531-73471818(+)$1	1	155	160	14.9999
((...	chr17:73872744-73872996(-)$1	1	149	154	14.9999
((.((	chr3:119153573-119153866(-)$1	1	67	72	14.9999
)).))	chr17:61911817-61912031(-)$1	1	185	190	14.9999
.(((.	chr17:45727602-45727841(+)$1	1	153	158	14.9999
....)	chr9:6805602-6805881(+)$1	1	154	159	14.9999
(((((	chr17:79864185-79864455(-)$1	1	70	75	14.9999
((((.	chr20:62289681-62289905(+)$1	1	37	42	14.9999
).(((	chr17:7127863-7128131(+)$1	1	119	124	14.9999
....)	chr2:24307244-24307503(-)$1	1	148	153	14.9999
.))))	chr3:184102224-184102473(+)$1	1	120	125	14.9999
((.((	chr16:89858788-89859027(-)$1	1	0	5	14.9999
((.((	chr17:2238566-2238802(-)$1	1	71	76	14.9999
(((((	chr17:78188460-78188707(-)$1	1	26	31	14.9999
(((((	chr14:74755269-74755531(-)$1	1	179	184	14.9999
).)))	chr4:77987387-77987669(-)$1	1	124	129	14.9999
.((((	chr12:124957493-124957781(-)$1	1	124	129	14.9999
)..))	chr5:140048544-140048764(+)$1	1	36	41	14.9999
(((..	chr6:32946019-32946269(+)$1	1	3	8	14.9999
(((((	chr17:40123810-40124055(+)$1	1	18	23	14.9999
(.(((	chr14:23946562-23946907(+)$1	1	97	102	14.9999
((...	chr17:17716161-17716421(-)$1	1	168	173	14.9999
(((((	chr3:47887038-47887322(+)$1	1	96	101	14.9999
)))((	chr16:18801122-18801387(-)$1	1	98	103	14.9999
)))))	chr7:1197704-1198017(-)$1	1	274	279	14.9999
))).)	chr17:7082307-7082568(-)$1	1	87	92	14.9999
.))).	chr1:109825470-109825758(-)$1	1	67	72	14.9999
(((.(	chr3:50102364-50102661(+)$1	1	5	10	14.9999
...))	chr11:118923386-118923637(-)$1	1	151	156	14.9999
((((.	chr16:69362938-69363237(-)$1	1	156	161	14.9999
..)))	chr12:112229112-112229376(+)$1	1	48	53	14.9999
((.((	chr2:242590383-242590605(+)$1	1	154	159	14.9999
(((((	chr19:1271994-1272232(+)$1	1	140	145	14.9999
((((.	chr2:96991348-96991653(+)$1	1	196	201	14.9999
))).)	chr13:50571221-50571510(+)$1	1	160	165	14.9999
(((..	chr3:184046497-184046800(+)$1	1	109	114	14.9999
..)))	chr19:10505967-10506197(-)$1	1	190	195	14.9999
)))).	chr3:38416483-38416757(+)$1	1	87	92	14.9999

#PSSM
G : 0.94	g : 0.05	
C : 0.94	c : 0.05	
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	

#score	809.9999999999995
#seq	54
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_transcript_m2_run1.nuc.txt

#NT
UGGGCAUGG	chr12:122257410-122257673(+)$1	263	163	172	14.7118
GGGGCCAGG	chr6:43752686-43752940(+)$1	254	200	209	12.8474
UGGGGCUGG	chr11:72413981-72414224(-)$1	243	159	168	16.3220
AGAGCCUGG	chr1:1597227-1597484(-)$1	257	181	190	11.8305
AGGGCCCGG	chr17:78320412-78320636(+)$1	224	82	91	11.9999
UGGGCCUGG	chr20:60913088-60913306(-)$1	218	62	71	18.7796
UGGCCCAGG	chr7:98528990-98529301(+)$1	311	245	254	12.1694
UGGGGCUGU	chr7:5427665-5427899(-)$1	234	106	115	12.8474
UGGGAGUGG	chr16:72993384-72993646(-)$1	262	72	81	11.5762
UGGACAUGG	chr1:19511535-19511759(-)$1	224	198	207	11.7457
ugugccugg	chr12:6704450-6704695(-)$1	245	29	38	14.4576
UGGACCUGU	chr22:50678532-50678791(-)$1	259	92	101	12.3389
uggggcuga	chr17:15340446-15340697(-)$1	251	99	108	12.4237
UGGACGUGG	chr16:2164079-2164327(-)$1	248	29	38	11.7457
UGGGGCUGU	chr16:28223001-28223293(-)$1	292	20	29	12.8474
UGGUUCUGG	chr9:139368555-139368807(-)$1	252	47	56	12.7627
AGCGCCUGG	chr8:144998747-144999001(-)$1	254	24	33	11.8305
AGGGCCAGG	chr17:74383438-74383678(+)$1	240	125	134	12.5932
UGGGUCUGG	chr11:71949867-71950181(+)$1	314	25	34	15.8135
UGGGCCUGG	chr11:46569780-46570076(-)$1	296	114	123	18.7796
UGGGACUGU	chr2:74669289-74669613(-)$1	324	139	148	12.1694
UGGGGCUGU	chr15:28513543-28513789(-)$1	246	135	144	12.8474
AGGGUCUGG	chr8:103359146-103359414(-)$1	268	208	217	13.0169
GCGGCCUGG	chr1:171454761-171454965(+)$1	204	175	184	11.8305
GGGUCCUGG	chr1:52344246-52344508(-)$1	262	177	186	13.1864
GGGGCCUGG	chr7:100280227-100280457(-)$1	230	64	73	16.2372
UGGGCCUGG	chr19:10799189-10799415(+)$1	226	166	175	18.7796
UGGGCCUGC	chrX:70787366-70787612(+)$1	246	71	80	14.8813
GGGGCCAGG	chr2:32613858-32614107(+)$1	249	129	138	12.8474
UGGACCAGG	chr9:117068704-117068939(+)$1	235	48	57	12.4237
GGGGCCAGG	chr1:43907838-43908141(+)$1	303	209	218	12.8474
UGAGGCUGG	chr16:70696765-70697017(-)$1	252	137	146	12.1694
UGAGCCUGG	chr12:49444618-49444862(-)$1	244	99	108	14.6271
UGGGACUGA	chr6:56358799-56359070(-)$1	271	12	21	11.7457
UGGACCUGG	chr9:14801715-14801973(-)$1	258	150	159	15.8135
UGGUGCUGG	chr2:21234688-21234941(-)$1	253	195	204	13.2711
UGGAGCUGG	chr17:39977828-39978091(+)$1	263	116	125	13.3559
UGGGCCUGG	chr9:95993200-95993471(+)$1	271	142	151	18.7796
UGGGCCUCG	chr4:1809189-1809413(+)$1	224	193	202	13.9491
UGCUCCUGG	chr2:73678159-73678411(+)$1	252	6	15	11.5762
UCGGUCUGG	chr16:2815118-2815367(+)$1	249	141	150	11.4067
AGGGCUUGG	chr1:19440392-19440633(-)$1	241	226	235	11.8305
UGGCCAUGG	chr16:88719657-88719916(-)$1	259	159	168	11.4915
UGGGCCUGC	chr9:116930072-116930299(+)$1	227	139	148	14.8813
GAGGCCUGG	chr9:117073865-117074082(+)$1	217	83	92	11.6610
UGGGGGUGG	chr17:8160084-8160337(+)$1	253	1	10	12.2542
UGGAGCUGG	chr10:101606730-101606972(+)$1	242	69	78	13.3559
UGGGCCUGU	chr7:103243820-103244036(-)$1	216	59	68	15.3050
CGGGUCUGG	chr17:79268856-79269174(-)$1	318	135	144	12.5932
UGGGCUUGG	chr3:184102773-184103093(+)$1	320	150	159	14.6271
AGGGCCUGG	chr10:105361505-105361750(-)$1	245	181	190	15.9830
UGGGGCGGG	chr19:2216181-2216440(+)$1	259	64	73	12.4237
UGGUCCUGU	chr1:22206550-22206804(-)$1	254	40	49	12.2542
GCGGCCUGG	chrX:19001872-19002181(-)$1	309	109	118	11.8305
GGCGCCUGG	chr6:142623223-142623549(+)$1	326	143	152	12.0847
UGGUCCGGG	chr3:66024107-66024393(-)$1	286	120	129	11.8305
UGGCCCAGG	chr11:16847789-16848181(-)$1	392	374	383	12.1694
GGGCCCUGG	chr6:90529275-90529517(-)$1	242	179	188	13.0169

#otherMatches

#Struct PSSM
ffff]ccc:	chr20:39803729-39803986(+)$1	257	212	221	12.1694
F{HHHHHHH	chr12:122257410-122257673(+)$1	263	163	172	14.7118
eeeiiiiii	chr6:43752686-43752940(+)$1	254	200	209	12.8474
FFFFFYYCC	chr11:72413981-72414224(-)$1	243	159	168	16.3220
444hhhhhh	chr1:1597227-1597484(-)$1	257	181	190	11.8305
!eeeee[ff	chr17:78320412-78320636(+)$1	224	82	91	11.9999
FFFCCC{CC	chr20:60913088-60913306(-)$1	218	62	71	18.7796
[bb[ccchh	chr7:98528990-98529301(+)$1	311	245	254	12.1694
:eeeeeooo	chr7:5427665-5427899(-)$1	234	106	115	12.8474
GGGGGCCCe	chr16:72993384-72993646(-)$1	262	72	81	11.5762
ddd4444ff	chr1:19511535-19511759(-)$1	224	198	207	11.7457
B{GGGGGGG	chr12:6704450-6704695(-)$1	245	29	38	14.4576
GGGGGGG{D	chr22:50678532-50678791(-)$1	259	92	101	12.3389
BKKEEEEE:	chr17:15340446-15340697(-)$1	251	99	108	12.4237
d$$$$$eee	chr16:2164079-2164327(-)$1	248	29	38	11.7457
mma]dddd]	chr16:28223001-28223293(-)$1	292	20	29	12.8474
cceeeeeff	chr9:139368555-139368807(-)$1	252	47	56	12.7627
DDD{CCCdd	chr8:144998747-144999001(-)$1	254	24	33	11.8305
cc22bb22b	chr17:74383438-74383678(+)$1	240	125	134	12.5932
DDDD{BB{A	chr11:71949867-71950181(+)$1	314	25	34	15.8135
EEEE:dddd	chr11:46569780-46570076(-)$1	296	114	123	18.7796
GGGG{BB{F	chr2:74669289-74669613(-)$1	324	139	148	12.1694
dddJJJJJJ	chr15:28513543-28513789(-)$1	246	135	144	12.8474
gggggg::d	chr8:103359146-103359414(-)$1	268	208	217	13.0169
fffffeeee	chr1:171454761-171454965(+)$1	204	175	184	11.8305
]hhhhhhhh	chr1:52344246-52344508(-)$1	262	177	186	13.1864
fffff!!am	chr7:100280227-100280457(-)$1	230	64	73	16.2372
b22cccccc	chr19:10799189-10799415(+)$1	226	166	175	18.7796
FFFFGGGGG	chrX:70787366-70787612(+)$1	246	71	80	14.8813
bmmmmbb22	chr2:32613858-32614107(+)$1	249	129	138	12.8474
f333accc2	chr9:117068704-117068939(+)$1	235	48	57	12.4237
dddd[eeee	chr1:43907838-43908141(+)$1	303	209	218	12.8474
ffffffddd	chr16:70696765-70697017(-)$1	252	137	146	12.1694
ggggg22ee	chr12:49444618-49444862(-)$1	244	99	108	14.6271
DDD{FFFFF	chr6:56358799-56359070(-)$1	271	12	21	11.7457
ddd!!gggg	chr9:14801715-14801973(-)$1	258	150	159	15.8135
DDbb[gggg	chr2:21234688-21234941(-)$1	253	195	204	13.2711
:bb[bbmmm	chr17:39977828-39978091(+)$1	263	116	125	13.3559
KHHHHHHHH	chr9:95993200-95993471(+)$1	271	142	151	18.7796
=======:H	chr4:1809189-1809413(+)$1	224	193	202	13.9491
GGLLLDDDD	chr2:73678159-73678411(+)$1	252	6	15	11.5762
JJJJfffff	chr16:2815118-2815367(+)$1	249	141	150	11.4067
YYHHHHHHH	chr1:19440392-19440633(-)$1	241	226	235	11.8305
ndddd]fff	chr16:88719657-88719916(-)$1	259	159	168	11.4915
ooooohhhh	chr9:116930072-116930299(+)$1	227	139	148	14.8813
mmmmddddb	chr9:117073865-117074082(+)$1	217	83	92	11.6610
:HHHHHHHH	chr17:8160084-8160337(+)$1	253	1	10	12.2542
:DDDD{FFF	chr10:101606730-101606972(+)$1	242	69	78	13.3559
55eeeee]e	chr7:103243820-103244036(-)$1	216	59	68	15.3050
hhhhhmmmm	chr17:79268856-79269174(-)$1	318	135	144	12.5932
ggggggmmm	chr3:184102773-184103093(+)$1	320	150	159	14.6271
eeebbcccd	chr10:105361505-105361750(-)$1	245	181	190	15.9830
mmccc]eee	chr19:2216181-2216440(+)$1	259	64	73	12.4237
6iiiiiiii	chr1:22206550-22206804(-)$1	254	40	49	12.2542
d]eeeee22	chrX:19001872-19002181(-)$1	309	109	118	11.8305
eeeoooooo	chr6:142623223-142623549(+)$1	326	143	152	12.0847
fffdddd[a	chr3:66024107-66024393(-)$1	286	120	129	11.8305
EEE}CCC}B	chr11:16847789-16848181(-)$1	392	374	383	12.1694
mmfffffff	chr6:90529275-90529517(-)$1	242	179	188	13.0169

#DB
)))).))).	chr20:39803729-39803986(+)$1	1	212	221	12.1694
(.(((((((	chr12:122257410-122257673(+)$1	1	163	172	14.7118
)))))))))	chr6:43752686-43752940(+)$1	1	200	209	12.8474
)))))..))	chr11:72413981-72414224(-)$1	1	159	168	16.3220
...))))))	chr1:1597227-1597484(-)$1	1	181	190	11.8305
.(((((.((	chr17:78320412-78320636(+)$1	1	82	91	11.9999
((((((.((	chr20:60913088-60913306(-)$1	1	62	71	18.7796
.((.(((((	chr7:98528990-98529301(+)$1	1	245	254	12.1694
.(((((...	chr7:5427665-5427899(-)$1	1	106	115	12.8474
(((((((((	chr16:72993384-72993646(-)$1	1	72	81	11.5762
)))....))	chr1:19511535-19511759(-)$1	1	198	207	11.7457
(.(((((((	chr12:6704450-6704695(-)$1	1	29	38	14.4576
(((((((.(	chr22:50678532-50678791(-)$1	1	92	101	12.3389
(..(((((.	chr17:15340446-15340697(-)$1	1	99	108	12.4237
(.....(((	chr16:2164079-2164327(-)$1	1	29	38	11.7457
..).)))).	chr16:28223001-28223293(-)$1	1	20	29	12.8474
)))))))((	chr9:139368555-139368807(-)$1	1	47	56	12.7627
(((.(((((	chr8:144998747-144999001(-)$1	1	24	33	11.8305
))..))..)	chr17:74383438-74383678(+)$1	1	125	134	12.5932
((((.((.(	chr11:71949867-71950181(+)$1	1	25	34	15.8135
((((.((((	chr11:46569780-46570076(-)$1	1	114	123	18.7796
((((.((.(	chr2:74669289-74669613(-)$1	1	139	148	12.1694
)))))))))	chr15:28513543-28513789(-)$1	1	135	144	12.8474
))))))..(	chr8:103359146-103359414(-)$1	1	208	217	13.0169
)))))((((	chr1:171454761-171454965(+)$1	1	175	184	11.8305
.))))))))	chr1:52344246-52344508(-)$1	1	177	186	13.1864
(((((..(.	chr7:100280227-100280457(-)$1	1	64	73	16.2372
)..))))))	chr19:10799189-10799415(+)$1	1	166	175	18.7796
(((((((((	chrX:70787366-70787612(+)$1	1	71	80	14.8813
(....))..	chr2:32613858-32614107(+)$1	1	129	138	12.8474
)...)))).	chr9:117068704-117068939(+)$1	1	48	57	12.4237
((((.((((	chr1:43907838-43908141(+)$1	1	209	218	12.8474
)))))))))	chr16:70696765-70697017(-)$1	1	137	146	12.1694
)))))..))	chr12:49444618-49444862(-)$1	1	99	108	14.6271
(((.(((((	chr6:56358799-56359070(-)$1	1	12	21	11.7457
(((..((((	chr9:14801715-14801973(-)$1	1	150	159	15.8135
))((.((((	chr2:21234688-21234941(-)$1	1	195	204	13.2711
.((.((...	chr17:39977828-39978091(+)$1	1	116	125	13.3559
.((((((((	chr9:95993200-95993471(+)$1	1	142	151	18.7796
))))))).)	chr4:1809189-1809413(+)$1	1	193	202	13.9491
((...((((	chr2:73678159-73678411(+)$1	1	6	15	11.5762
(((((((((	chr16:2815118-2815367(+)$1	1	141	150	11.4067
..)))))))	chr1:19440392-19440633(-)$1	1	226	235	11.8305
.)))).)))	chr16:88719657-88719916(-)$1	1	159	168	11.4915
.....))))	chr9:116930072-116930299(+)$1	1	139	148	14.8813
....))))(	chr9:117073865-117074082(+)$1	1	83	92	11.6610
.((((((((	chr17:8160084-8160337(+)$1	1	1	10	12.2542
.((((.(((	chr10:101606730-101606972(+)$1	1	69	78	13.3559
..))))).)	chr7:103243820-103244036(-)$1	1	59	68	15.3050
(((((....	chr17:79268856-79269174(-)$1	1	135	144	12.5932
((((((...	chr3:184102773-184103093(+)$1	1	150	159	14.6271
(((((((((	chr10:105361505-105361750(-)$1	1	181	190	15.9830
..))).)))	chr19:2216181-2216440(+)$1	1	64	73	12.4237
.))))))))	chr1:22206550-22206804(-)$1	1	40	49	12.2542
).)))))..	chrX:19001872-19002181(-)$1	1	109	118	11.8305
(((......	chr6:142623223-142623549(+)$1	1	143	152	12.0847
(((((((.(	chr3:66024107-66024393(-)$1	1	120	129	11.8305
))).))).)	chr11:16847789-16848181(-)$1	1	374	383	12.1694
..)))))))	chr6:90529275-90529517(-)$1	1	179	188	13.0169

#PSSM
U : 0.64	G : 0.16	A : 0.11	C : 0.03	u : 0.03	
G : 0.89	C : 0.05	g : 0.03	A : 0.01	
G : 0.86	A : 0.05	C : 0.05	u : 0.01	g : 0.01	
G : 0.67	A : 0.11	U : 0.10	C : 0.06	g : 0.03	
C : 0.66	G : 0.16	U : 0.08	A : 0.05	c : 0.01	g : 0.01	
C : 0.83	A : 0.05	G : 0.05	c : 0.03	U : 0.03	
U : 0.77	A : 0.13	u : 0.03	G : 0.03	C : 0.01	
G : 0.94	g : 0.03	C : 0.01	
G : 0.79	U : 0.11	C : 0.03	g : 0.01	a : 0.01	A : 0.01	

#score	789.9491525423723
#seq	59
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_UTR_m2_run2.nuc.txt

#NT
AGAAGACAA	chr5:95087842-95088112(+)$1	270	131	140	17.2040
AGAAGAAAA	chr13:107211782-107212097(-)$1	315	107	116	21.5918
AGAAGGAAA	chr1:165728659-165728921(-)$1	262	109	118	17.9183
AGAAGAAAA	chr19:59065332-59065704(-)$1	372	243	252	21.5918
agaagaaaa	chr14:102550990-102551265(-)$1	275	64	73	21.5918
AGAAGAAAG	chr4:76580851-76581155(-)$1	304	129	138	18.1224
UGAAGAAGA	chr1:154148588-154148825(-)$1	237	145	154	15.3673
AGAGGAAAA	chr8:117861083-117861293(-)$1	210	128	137	17.7142
AGAAGGAAG	chrX:102933330-102933624(-)$1	294	184	193	14.4489
AGAAGAAAG	chrX:102940040-102940289(-)$1	249	34	43	18.1224
agaagaaga	chr9:116170935-116171288(-)$1	353	158	167	18.9387
ggaagaaaa	chr1:16891201-16891515(-)$1	314	123	132	17.6122
AGAGGAAAA	chr8:117861093-117861317(-)$1	224	152	161	17.7142
ugaagaAAA	chr5:170827056-170827269(+)$1	213	133	142	18.0204
AGAAGGAAA	chr12:48176479-48176764(-)$1	285	79	88	17.9183
AGAAGAUAA	chr2:48025688-48025961(+)$1	273	93	102	17.2040
AGAAGUAGA	chr17:48823800-48824131(+)$1	331	100	109	14.9591
aaaagaaaa	chr4:73967994-73968347(-)$1	353	128	137	17.2040
UGAGGAAAA	chr2:232576505-232576751(+)$1	246	96	105	14.1428
AGAAGUAGA	chr1:161183942-161184236(+)$1	294	25	34	14.9591
agaagaaga	chr8:124382090-124382367(-)$1	277	233	242	18.9387
agaagaaga	chr8:124381972-124382290(-)$1	318	156	165	18.9387
agaaggaaa	chrX:154004371-154004660(+)$1	289	151	160	17.9183
AGAAGAACA	chr10:70520836-70521050(+)$1	214	34	43	18.1224
AGGAGAAAA	chr7:139094208-139094466(+)$1	258	119	128	16.8979
AGAAGACAA	chr3:186506820-186507157(+)$1	337	150	159	17.2040
AGAAGAAAA	chr6:99849282-99849547(-)$1	265	39	48	21.5918
AAAAGAAAA	chr6:18258440-18258737(-)$1	297	131	140	17.2040
GGAAGAAGA	chr4:152024089-152024383(+)$1	294	72	81	14.9591
AGAAGAAAA	chr3:156867968-156868278(-)$1	310	8	17	21.5918
agaagaaag	chr17:48823045-48823374(+)$1	329	103	112	18.1224
AGCAGAAGA	chr1:246349907-246350290(-)$1	383	160	169	14.2448
AGAAGAAGA	chr15:69072327-69072582(-)$1	255	99	108	18.9387
AGAAGAUAA	chr7:156626368-156626590(-)$1	222	64	73	17.2040
AGAAGCAAA	chr12:76443434-76443651(-)$1	217	163	172	17.5102
agaagaaga	chr4:174253130-174253339(-)$1	209	23	32	18.9387
AGAAGAAAG	chr7:148514851-148515175(-)$1	324	177	186	18.1224
AGAGGAAAA	chr8:117861117-117861339(-)$1	222	174	183	17.7142
AGAAGGAAG	chr10:22825603-22825877(-)$1	274	151	160	14.4489
AGAAGAAAA	chr3:196214164-196214498(-)$1	334	78	87	21.5918
AGAAGAAAA	chr11:68660255-68660506(-)$1	251	137	146	21.5918
ACAAGAAAA	chr1:24975313-24975568(+)$1	255	137	146	17.1020
AGAAGAACU	chr16:58633209-58633518(-)$1	309	139	148	14.0408
UGAAGAAAA	chr1:90493022-90493378(+)$1	356	225	234	18.0204
UGAAGAAAA	chr2:38975949-38976252(-)$1	303	112	121	18.0204
UGAGGAAAA	chr2:232576551-232576778(+)$1	227	50	59	14.1428
AGAAGAAUG	chr2:29169490-29169768(+)$1	278	145	154	14.5510
AUAAGAAAA	chr5:179151579-179151835(+)$1	256	100	109	17.1020

#otherMatches

#Struct PSSM
GGGGGGG::	chr1:155883866-155884154(-)$1	288	58	67	17.3061
cc4444eee	chr5:95087842-95088112(+)$1	270	131	140	17.2040
+++++++++	chr13:107211782-107212097(-)$1	315	107	116	21.5918
55=======	chr1:165728659-165728921(-)$1	262	109	118	17.9183
HHEEEEE||	chr19:59065332-59065704(-)$1	372	243	252	21.5918
+++++++++	chr14:102550990-102551265(-)$1	275	64	73	21.5918
^^^^^^^^^	chr4:76580851-76581155(-)$1	304	129	138	18.1224
ttttttttg	chr1:154148588-154148825(-)$1	237	145	154	15.3673
cc]bb22gg	chr8:117861083-117861293(-)$1	210	128	137	17.7142
JJJJJJJJJ	chrX:102933330-102933624(-)$1	294	184	193	14.4489
::ggggggg	chrX:102940040-102940289(-)$1	249	34	43	18.1224
GGG{AMMMM	chr9:116170935-116171288(-)$1	353	158	167	18.9387
c]a::::::	chr1:16891201-16891515(-)$1	314	123	132	17.6122
cc]bb22gg	chr8:117861093-117861317(-)$1	224	152	161	17.7142
a]dddd22f	chr5:170827056-170827269(+)$1	213	133	142	18.0204
:::::::::	chr12:48176479-48176764(-)$1	285	79	88	17.9183
2hhhhhhhh	chr2:48025688-48025961(+)$1	273	93	102	17.2040
mmmeeeee5	chr17:48823800-48824131(+)$1	331	100	109	14.9591
bdddd333e	chr4:73967994-73968347(-)$1	353	128	137	17.2040
g]ccc333c	chr2:232576505-232576751(+)$1	246	96	105	14.1428
FFFFFF:::	chr1:161183942-161184236(+)$1	294	25	34	14.9591
EEE}EEEEE	chr8:124382090-124382367(-)$1	277	233	242	18.9387
gg%%%%%%b	chr8:124381972-124382290(-)$1	318	156	165	18.9387
5a]dddd::	chrX:154004371-154004660(+)$1	289	151	160	17.9183
::FFFFFF:	chr10:70520836-70521050(+)$1	214	34	43	18.1224
[bbssssss	chr7:139094208-139094466(+)$1	258	119	128	16.8979
ffff!!amm	chr3:186506820-186507157(+)$1	337	150	159	17.2040
[aqqqqqqq	chr6:99849282-99849547(-)$1	265	39	48	21.5918
d:::::GGG	chr6:18258440-18258737(-)$1	297	131	140	17.2040
bb::::::e	chr4:152024089-152024383(+)$1	294	72	81	14.9591
:::DDDDLL	chr3:156867968-156868278(-)$1	310	8	17	21.5918
:::::::::	chr17:48823045-48823374(+)$1	329	103	112	18.1224
HHHHEEEEE	chr1:246349907-246350290(-)$1	383	160	169	14.2448
mddddgggg	chr15:69072327-69072582(-)$1	255	99	108	18.9387
ggggg:::d	chr7:156626368-156626590(-)$1	222	64	73	17.2040
CC}DDDD::	chr12:76443434-76443651(-)$1	217	163	172	17.5102
>>>>>>>>>	chr4:174253130-174253339(-)$1	209	23	32	18.9387
dd[bb"""b	chr7:148514851-148515175(-)$1	324	177	186	18.1224
cc]bb22gg	chr8:117861117-117861339(-)$1	222	174	183	17.7142
JJJJJJJJc	chr10:22825603-22825877(-)$1	274	151	160	14.4489
:::::::::	chr3:196214164-196214498(-)$1	334	78	87	21.5918
EEEEE~~~~	chr11:68660255-68660506(-)$1	251	137	146	21.5918
c:EEEEE}D	chr1:24975313-24975568(+)$1	255	137	146	17.1020
hhhhhhhh3	chr16:58633209-58633518(-)$1	309	139	148	14.0408
dd:::::::	chr1:90493022-90493378(+)$1	356	225	234	18.0204
sssssssss	chr2:38975949-38976252(-)$1	303	112	121	18.0204
g]ccc333c	chr2:232576551-232576778(+)$1	227	50	59	14.1428
:::::::::	chr2:29169490-29169768(+)$1	278	145	154	14.5510
ffff55555	chr5:179151579-179151835(+)$1	256	100	109	17.1020

#DB
(((((((..	chr1:155883866-155884154(-)$1	1	58	67	17.3061
))....)))	chr5:95087842-95088112(+)$1	1	131	140	17.2040
.........	chr13:107211782-107212097(-)$1	1	107	116	21.5918
..)))))))	chr1:165728659-165728921(-)$1	1	109	118	17.9183
)))))))..	chr19:59065332-59065704(-)$1	1	243	252	21.5918
.........	chr14:102550990-102551265(-)$1	1	64	73	21.5918
.........	chr4:76580851-76581155(-)$1	1	129	138	18.1224
........)	chr1:154148588-154148825(-)$1	1	145	154	15.3673
)).))..))	chr8:117861083-117861293(-)$1	1	128	137	17.7142
)))))))))	chrX:102933330-102933624(-)$1	1	184	193	14.4489
..(((((((	chrX:102940040-102940289(-)$1	1	34	43	18.1224
(((.(....	chr9:116170935-116171288(-)$1	1	158	167	18.9387
).)......	chr1:16891201-16891515(-)$1	1	123	132	17.6122
)).))..))	chr8:117861093-117861317(-)$1	1	152	161	17.7142
).))))..)	chr5:170827056-170827269(+)$1	1	133	142	18.0204
.........	chr12:48176479-48176764(-)$1	1	79	88	17.9183
.))))))))	chr2:48025688-48025961(+)$1	1	93	102	17.2040
...))))).	chr17:48823800-48824131(+)$1	1	100	109	14.9591
)))))...)	chr4:73967994-73968347(-)$1	1	128	137	17.2040
).)))...)	chr2:232576505-232576751(+)$1	1	96	105	14.1428
((((((...	chr1:161183942-161184236(+)$1	1	25	34	14.9591
))).)))))	chr8:124382090-124382367(-)$1	1	233	242	18.9387
((......(	chr8:124381972-124382290(-)$1	1	156	165	18.9387
.).))))..	chrX:154004371-154004660(+)$1	1	151	160	17.9183
..((((((.	chr10:70520836-70521050(+)$1	1	34	43	18.1224
.((......	chr7:139094208-139094466(+)$1	1	119	128	16.8979
((((..(..	chr3:186506820-186507157(+)$1	1	150	159	17.2040
.(.......	chr6:99849282-99849547(-)$1	1	39	48	21.5918
).....)))	chr6:18258440-18258737(-)$1	1	131	140	17.2040
))......(	chr4:152024089-152024383(+)$1	1	72	81	14.9591
...((((..	chr3:156867968-156868278(-)$1	1	8	17	21.5918
.........	chr17:48823045-48823374(+)$1	1	103	112	18.1224
)))))))))	chr1:246349907-246350290(-)$1	1	160	169	14.2448
.))))))))	chr15:69072327-69072582(-)$1	1	99	108	18.9387
)))))...(	chr7:156626368-156626590(-)$1	1	64	73	17.2040
)).))))..	chr12:76443434-76443651(-)$1	1	163	172	17.5102
.........	chr4:174253130-174253339(-)$1	1	23	32	18.9387
((.((...(	chr7:148514851-148515175(-)$1	1	177	186	18.1224
)).))..))	chr8:117861117-117861339(-)$1	1	174	183	17.7142
(((((((((	chr10:22825603-22825877(-)$1	1	151	160	14.4489
.........	chr3:196214164-196214498(-)$1	1	78	87	21.5918
)))))....	chr11:68660255-68660506(-)$1	1	137	146	21.5918
).))))).)	chr1:24975313-24975568(+)$1	1	137	146	17.1020
)))))))).	chr16:58633209-58633518(-)$1	1	139	148	14.0408
)).......	chr1:90493022-90493378(+)$1	1	225	234	18.0204
.........	chr2:38975949-38976252(-)$1	1	112	121	18.0204
).)))...)	chr2:232576551-232576778(+)$1	1	50	59	14.1428
.........	chr2:29169490-29169768(+)$1	1	145	154	14.5510
)))).....	chr5:179151579-179151835(+)$1	1	100	109	17.1020

#PSSM
A : 0.67	a : 0.16	U : 0.10	g : 0.02	u : 0.02	G : 0.02	
G : 0.73	g : 0.18	a : 0.02	A : 0.02	C : 0.02	U : 0.02	
A : 0.75	a : 0.20	G : 0.02	C : 0.02	
A : 0.67	a : 0.20	G : 0.10	U : 0.02	
G : 0.79	g : 0.20	
A : 0.65	a : 0.18	G : 0.08	U : 0.04	g : 0.02	C : 0.02	
A : 0.73	a : 0.18	C : 0.04	U : 0.04	
A : 0.63	G : 0.12	a : 0.10	g : 0.08	C : 0.04	U : 0.02	
A : 0.67	a : 0.16	G : 0.12	g : 0.02	U : 0.02	

#score	864.4285714285719
#seq	49
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_transcript_m2_run1.nuc.txt

#NT
ucuu	chr17:56078251-56078509(-)$1	258	145	149	11.9999
UCUU	chr20:34329824-34330085(-)$1	261	179	183	11.9999
UCUU	chr7:158557364-158557659(-)$1	295	0	4	11.9999
ucuu	chr5:19035999-19036263(-)$1	264	16	20	11.9999
UCUU	chr5:131034539-131034800(-)$1	261	254	258	11.9999
UCUU	chr22:29688008-29688261(+)$1	253	100	104	11.9999
ucuu	chr7:97491220-97491540(-)$1	320	90	94	11.9999
UCUU	chr16:84163636-84163883(-)$1	247	66	70	11.9999
UCUU	chr20:5584923-5585197(-)$1	274	29	33	11.9999
UCUU	chr16:2809035-2809275(+)$1	240	73	77	11.9999
ucuu	chr19:29025453-29025769(-)$1	316	24	28	11.9999
ucuu	chr16:31199527-31199808(+)$1	281	66	70	11.9999
ucuu	chr11:62566375-62566648(-)$1	273	9	13	11.9999
UCUU	chr10:52127170-52127418(-)$1	248	78	82	11.9999
UCUU	chr10:24880325-24880574(-)$1	249	0	4	11.9999
UCUU	chr17:29552004-29552296(+)$1	292	59	63	11.9999
UCUU	chr2:177169141-177169397(+)$1	256	3	7	11.9999
UCUU	chr1:227448351-227448598(-)$1	247	8	12	11.9999
UCUU	chr1:52222442-52222690(+)$1	248	86	90	11.9999
UCUU	chr6:80741080-80741353(+)$1	273	56	60	11.9999
UCUU	chr11:68325918-68326172(+)$1	254	19	23	11.9999
UCUU	chr20:33026510-33026762(+)$1	252	3	7	11.9999
UCUU	chr2:232323011-232323276(-)$1	265	107	111	11.9999
UCUU	chr8:48856623-48856896(-)$1	273	55	59	11.9999
UCUU	chr2:29016614-29016872(+)$1	258	28	32	11.9999
UCUU	chr4:24538632-24538873(-)$1	241	226	230	11.9999
UCUU	chr3:42671857-42672113(+)$1	256	68	72	11.9999
UCUU	chr11:73554179-73554453(+)$1	274	33	37	11.9999
UCUU	chr3:180685728-180685996(+)$1	268	94	98	11.9999
UCUU	chr12:110783659-110783890(+)$1	231	79	83	11.9999
UCUU	chr2:242625316-242625627(-)$1	311	44	48	11.9999
UCUU	chr15:65398561-65398839(-)$1	278	80	84	11.9999
UCUU	chr17:57915592-57915841(+)$1	249	15	19	11.9999
ucuu	chr12:70681116-70681379(+)$1	263	38	42	11.9999
UCUU	chr16:53500854-53501131(+)$1	277	106	110	11.9999
UCUU	chr9:111800263-111800501(-)$1	238	76	80	11.9999
UCUU	chr17:27861008-27861292(+)$1	284	34	38	11.9999
UCUU	chr11:62401210-62401459(-)$1	249	20	24	11.9999
UCUU	chr17:73942725-73942991(-)$1	266	78	82	11.9999
UCUU	chr6:147600759-147601041(+)$1	282	0	4	11.9999
ucuu	chr1:111680339-111680623(-)$1	284	46	50	11.9999
UCUU	chr9:111800301-111800512(-)$1	211	87	91	11.9999
UCUU	chr5:167922254-167922515(+)$1	261	6	10	11.9999
UCUU	chr15:43252808-43253016(-)$1	208	92	96	11.9999
UCUU	chr11:5463715-5463959(-)$1	244	194	198	11.9999
UCUU	chr7:16644422-16644672(-)$1	250	51	55	11.9999
UCUU	chr12:6618763-6619041(+)$1	278	5	9	11.9999
UCUU	chr17:37009261-37009473(-)$1	212	80	84	11.9999
ucuu	chr3:176787413-176787717(-)$1	304	164	168	11.9999
UCUU	chr17:49128151-49128466(-)$1	315	22	26	11.9999
UCUU	chr3:196802611-196802876(-)$1	265	31	35	11.9999
UCUU	chr3:37138029-37138358(-)$1	329	50	54	11.9999
UCUU	chr11:62570920-62571155(-)$1	235	21	25	11.9999
UCUU	chr1:36751856-36752106(+)$1	250	51	55	11.9999
UCUU	chrX:153994415-153994626(+)$1	211	90	94	11.9999
UCUU	chr12:53836366-53836611(+)$1	245	83	87	11.9999
UCUU	chr3:195801172-195801423(-)$1	251	76	80	11.9999
UCUU	chr15:59191993-59192256(-)$1	263	81	85	11.9999
UCUU	chr17:74730510-74730757(-)$1	247	85	89	11.9999
UCUU	chr17:49362494-49362747(+)$1	253	87	91	11.9999
UCUU	chr7:138203814-138204077(+)$1	263	89	93	11.9999
UCUU	chr11:34104250-34104513(+)$1	263	115	119	11.9999
UCUU	chr1:204499633-204499896(+)$1	263	62	66	11.9999
UCUU	chr12:46322462-46322748(-)$1	286	59	63	11.9999
UCUU	chr22:42335491-42335760(-)$1	269	7	11	11.9999
UCUU	chr22:22143074-22143319(-)$1	245	27	31	11.9999
UCUU	chr10:70516939-70517186(+)$1	247	92	96	11.9999
UCUU	chr19:11030348-11030605(+)$1	257	144	148	11.9999
UCUU	chr16:28837920-28838173(+)$1	253	19	23	11.9999
UCUU	chr12:96682923-96683179(-)$1	256	82	86	11.9999
UCUU	chr9:134015630-134015857(+)$1	227	129	133	11.9999
UCUU	chr1:25568779-25569024(-)$1	245	112	116	11.9999
UCUU	chr4:77996889-77997143(-)$1	254	56	60	11.9999
UCUU	chr12:72054054-72054317(-)$1	263	87	91	11.9999
UCUU	chr15:44091692-44091974(+)$1	282	108	112	11.9999
UCUU	chr7:141450017-141450261(+)$1	244	147	151	11.9999
ucuu	chr18:70919709-70919962(-)$1	253	104	108	11.9999
UCUU	chr12:57909800-57910018(+)$1	218	59	63	11.9999
ucuu	chr7:6441120-6441385(+)$1	265	100	104	11.9999
UCUU	chr11:10879317-10879587(-)$1	270	81	85	11.9999
UCUU	chr10:93719619-93719873(+)$1	254	95	99	11.9999
UCUU	chr6:31729776-31729987(+)$1	211	66	70	11.9999
ucuu	chr6:163991610-163991868(+)$1	258	55	59	11.9999
UCUU	chr11:46765965-46766241(-)$1	276	20	24	11.9999
UCUU	chr17:57737483-57737713(+)$1	230	112	116	11.9999
UCUU	chr18:2750240-2750461(+)$1	221	91	95	11.9999
ucuu	chr1:46736209-46736468(+)$1	259	16	20	11.9999

#otherMatches

#Struct PSSM
::::	chr1:172520550-172520780(+)$1	230	44	48	11.9999
GGGG	chr17:56078251-56078509(-)$1	258	145	149	11.9999
::::	chr20:34329824-34330085(-)$1	261	179	183	11.9999
:::C	chr7:158557364-158557659(-)$1	295	0	4	11.9999
DJJJ	chr5:19035999-19036263(-)$1	264	16	20	11.9999
EEEE	chr5:131034539-131034800(-)$1	261	254	258	11.9999
::::	chr22:29688008-29688261(+)$1	253	100	104	11.9999
::::	chr7:97491220-97491540(-)$1	320	90	94	11.9999
chhh	chr16:84163636-84163883(-)$1	247	66	70	11.9999
:FFF	chr20:5584923-5585197(-)$1	274	29	33	11.9999
:===	chr16:2809035-2809275(+)$1	240	73	77	11.9999
444f	chr19:29025453-29025769(-)$1	316	24	28	11.9999
:DDD	chr16:31199527-31199808(+)$1	281	66	70	11.9999
::::	chr11:62566375-62566648(-)$1	273	9	13	11.9999
QQQQ	chr10:52127170-52127418(-)$1	248	78	82	11.9999
::::	chr10:24880325-24880574(-)$1	249	0	4	11.9999
b]cc	chr17:29552004-29552296(+)$1	292	59	63	11.9999
::::	chr2:177169141-177169397(+)$1	256	3	7	11.9999
:::d	chr1:227448351-227448598(-)$1	247	8	12	11.9999
2bb:	chr1:52222442-52222690(+)$1	248	86	90	11.9999
d444	chr6:80741080-80741353(+)$1	273	56	60	11.9999
cmmm	chr11:68325918-68326172(+)$1	254	19	23	11.9999
eeqq	chr20:33026510-33026762(+)$1	252	3	7	11.9999
CC::	chr2:232323011-232323276(-)$1	265	107	111	11.9999
====	chr8:48856623-48856896(-)$1	273	55	59	11.9999
ccc!	chr2:29016614-29016872(+)$1	258	28	32	11.9999
mmme	chr4:24538632-24538873(-)$1	241	226	230	11.9999
::::	chr3:42671857-42672113(+)$1	256	68	72	11.9999
:ddd	chr11:73554179-73554453(+)$1	274	33	37	11.9999
iii:	chr3:180685728-180685996(+)$1	268	94	98	11.9999
cooo	chr12:110783659-110783890(+)$1	231	79	83	11.9999
!!dd	chr2:242625316-242625627(-)$1	311	44	48	11.9999
^^^^	chr15:65398561-65398839(-)$1	278	80	84	11.9999
WWWW	chr17:57915592-57915841(+)$1	249	15	19	11.9999
$$$$	chr12:70681116-70681379(+)$1	263	38	42	11.9999
uuuu	chr16:53500854-53501131(+)$1	277	106	110	11.9999
::::	chr9:111800263-111800501(-)$1	238	76	80	11.9999
mmmm	chr17:27861008-27861292(+)$1	284	34	38	11.9999
::::	chr11:62401210-62401459(-)$1	249	20	24	11.9999
dbbn	chr17:73942725-73942991(-)$1	266	78	82	11.9999
IIII	chr6:147600759-147601041(+)$1	282	0	4	11.9999
IIII	chr1:111680339-111680623(-)$1	284	46	50	11.9999
::::	chr9:111800301-111800512(-)$1	211	87	91	11.9999
:::C	chr5:167922254-167922515(+)$1	261	6	10	11.9999
ffff	chr15:43252808-43253016(-)$1	208	92	96	11.9999
FFFF	chr11:5463715-5463959(-)$1	244	194	198	11.9999
''''	chr7:16644422-16644672(-)$1	250	51	55	11.9999
:fff	chr12:6618763-6619041(+)$1	278	5	9	11.9999
^^^^	chr17:37009261-37009473(-)$1	212	80	84	11.9999
::::	chr3:176787413-176787717(-)$1	304	164	168	11.9999
DD::	chr17:49128151-49128466(-)$1	315	22	26	11.9999
uuuu	chr3:196802611-196802876(-)$1	265	31	35	11.9999
:::i	chr3:37138029-37138358(-)$1	329	50	54	11.9999
dd22	chr11:62570920-62571155(-)$1	235	21	25	11.9999
cc]d	chr1:36751856-36752106(+)$1	250	51	55	11.9999
pppc	chrX:153994415-153994626(+)$1	211	90	94	11.9999
^^^^	chr12:53836366-53836611(+)$1	245	83	87	11.9999
8888	chr3:195801172-195801423(-)$1	251	76	80	11.9999
iiii	chr15:59191993-59192256(-)$1	263	81	85	11.9999
::::	chr17:74730510-74730757(-)$1	247	85	89	11.9999
CCC:	chr17:49362494-49362747(+)$1	253	87	91	11.9999
CCC{	chr7:138203814-138204077(+)$1	263	89	93	11.9999
mmff	chr11:34104250-34104513(+)$1	263	115	119	11.9999
))))	chr1:204499633-204499896(+)$1	263	62	66	11.9999
::::	chr12:46322462-46322748(-)$1	286	59	63	11.9999
CHHH	chr22:42335491-42335760(-)$1	269	7	11	11.9999
OFFF	chr22:22143074-22143319(-)$1	245	27	31	11.9999
hhhh	chr10:70516939-70517186(+)$1	247	92	96	11.9999
::::	chr19:11030348-11030605(+)$1	257	144	148	11.9999
===^	chr16:28837920-28838173(+)$1	253	19	23	11.9999
gggg	chr12:96682923-96683179(-)$1	256	82	86	11.9999
dddd	chr9:134015630-134015857(+)$1	227	129	133	11.9999
cccc	chr1:25568779-25569024(-)$1	245	112	116	11.9999
::::	chr4:77996889-77997143(-)$1	254	56	60	11.9999
mfff	chr12:72054054-72054317(-)$1	263	87	91	11.9999
HHHH	chr15:44091692-44091974(+)$1	282	108	112	11.9999
iiii	chr7:141450017-141450261(+)$1	244	147	151	11.9999
:::G	chr18:70919709-70919962(-)$1	253	104	108	11.9999
::::	chr12:57909800-57910018(+)$1	218	59	63	11.9999
::::	chr7:6441120-6441385(+)$1	265	100	104	11.9999
>>>>	chr11:10879317-10879587(-)$1	270	81	85	11.9999
[fff	chr10:93719619-93719873(+)$1	254	95	99	11.9999
::::	chr6:31729776-31729987(+)$1	211	66	70	11.9999
^^^^	chr6:163991610-163991868(+)$1	258	55	59	11.9999
eeee	chr11:46765965-46766241(-)$1	276	20	24	11.9999
ee::	chr17:57737483-57737713(+)$1	230	112	116	11.9999
iiit	chr18:2750240-2750461(+)$1	221	91	95	11.9999
booo	chr1:46736209-46736468(+)$1	259	16	20	11.9999

#DB
....	chr1:172520550-172520780(+)$1	1	44	48	11.9999
))))	chr17:56078251-56078509(-)$1	1	145	149	11.9999
....	chr20:34329824-34330085(-)$1	1	179	183	11.9999
...(	chr7:158557364-158557659(-)$1	1	0	4	11.9999
((((	chr5:19035999-19036263(-)$1	1	16	20	11.9999
))))	chr5:131034539-131034800(-)$1	1	254	258	11.9999
....	chr22:29688008-29688261(+)$1	1	100	104	11.9999
....	chr7:97491220-97491540(-)$1	1	90	94	11.9999
((((	chr16:84163636-84163883(-)$1	1	66	70	11.9999
.(((	chr20:5584923-5585197(-)$1	1	29	33	11.9999
.(((	chr16:2809035-2809275(+)$1	1	73	77	11.9999
...)	chr19:29025453-29025769(-)$1	1	24	28	11.9999
.(((	chr16:31199527-31199808(+)$1	1	66	70	11.9999
....	chr11:62566375-62566648(-)$1	1	9	13	11.9999
....	chr10:52127170-52127418(-)$1	1	78	82	11.9999
....	chr10:24880325-24880574(-)$1	1	0	4	11.9999
).))	chr17:29552004-29552296(+)$1	1	59	63	11.9999
....	chr2:177169141-177169397(+)$1	1	3	7	11.9999
...(	chr1:227448351-227448598(-)$1	1	8	12	11.9999
.)).	chr1:52222442-52222690(+)$1	1	86	90	11.9999
)...	chr6:80741080-80741353(+)$1	1	56	60	11.9999
(...	chr11:68325918-68326172(+)$1	1	19	23	11.9999
((..	chr20:33026510-33026762(+)$1	1	3	7	11.9999
((..	chr2:232323011-232323276(-)$1	1	107	111	11.9999
))))	chr8:48856623-48856896(-)$1	1	55	59	11.9999
(((.	chr2:29016614-29016872(+)$1	1	28	32	11.9999
...)	chr4:24538632-24538873(-)$1	1	226	230	11.9999
....	chr3:42671857-42672113(+)$1	1	68	72	11.9999
.(((	chr11:73554179-73554453(+)$1	1	33	37	11.9999
))).	chr3:180685728-180685996(+)$1	1	94	98	11.9999
(...	chr12:110783659-110783890(+)$1	1	79	83	11.9999
..((	chr2:242625316-242625627(-)$1	1	44	48	11.9999
....	chr15:65398561-65398839(-)$1	1	80	84	11.9999
....	chr17:57915592-57915841(+)$1	1	15	19	11.9999
....	chr12:70681116-70681379(+)$1	1	38	42	11.9999
....	chr16:53500854-53501131(+)$1	1	106	110	11.9999
....	chr9:111800263-111800501(-)$1	1	76	80	11.9999
....	chr17:27861008-27861292(+)$1	1	34	38	11.9999
....	chr11:62401210-62401459(-)$1	1	20	24	11.9999
(((.	chr17:73942725-73942991(-)$1	1	78	82	11.9999
((((	chr6:147600759-147601041(+)$1	1	0	4	11.9999
((((	chr1:111680339-111680623(-)$1	1	46	50	11.9999
....	chr9:111800301-111800512(-)$1	1	87	91	11.9999
...(	chr5:167922254-167922515(+)$1	1	6	10	11.9999
))))	chr15:43252808-43253016(-)$1	1	92	96	11.9999
))))	chr11:5463715-5463959(-)$1	1	194	198	11.9999
....	chr7:16644422-16644672(-)$1	1	51	55	11.9999
.(((	chr12:6618763-6619041(+)$1	1	5	9	11.9999
....	chr17:37009261-37009473(-)$1	1	80	84	11.9999
....	chr3:176787413-176787717(-)$1	1	164	168	11.9999
((..	chr17:49128151-49128466(-)$1	1	22	26	11.9999
....	chr3:196802611-196802876(-)$1	1	31	35	11.9999
...(	chr3:37138029-37138358(-)$1	1	50	54	11.9999
))..	chr11:62570920-62571155(-)$1	1	21	25	11.9999
)).)	chr1:36751856-36752106(+)$1	1	51	55	11.9999
...)	chrX:153994415-153994626(+)$1	1	90	94	11.9999
....	chr12:53836366-53836611(+)$1	1	83	87	11.9999
....	chr3:195801172-195801423(-)$1	1	76	80	11.9999
((((	chr15:59191993-59192256(-)$1	1	81	85	11.9999
....	chr17:74730510-74730757(-)$1	1	85	89	11.9999
(((.	chr17:49362494-49362747(+)$1	1	87	91	11.9999
(((.	chr7:138203814-138204077(+)$1	1	89	93	11.9999
..))	chr11:34104250-34104513(+)$1	1	115	119	11.9999
....	chr1:204499633-204499896(+)$1	1	62	66	11.9999
....	chr12:46322462-46322748(-)$1	1	59	63	11.9999
((((	chr22:42335491-42335760(-)$1	1	7	11	11.9999
.(((	chr22:22143074-22143319(-)$1	1	27	31	11.9999
((((	chr10:70516939-70517186(+)$1	1	92	96	11.9999
....	chr19:11030348-11030605(+)$1	1	144	148	11.9999
(((.	chr16:28837920-28838173(+)$1	1	19	23	11.9999
))))	chr12:96682923-96683179(-)$1	1	82	86	11.9999
))))	chr9:134015630-134015857(+)$1	1	129	133	11.9999
((((	chr1:25568779-25569024(-)$1	1	112	116	11.9999
....	chr4:77996889-77997143(-)$1	1	56	60	11.9999
.)))	chr12:72054054-72054317(-)$1	1	87	91	11.9999
))))	chr15:44091692-44091974(+)$1	1	108	112	11.9999
))))	chr7:141450017-141450261(+)$1	1	147	151	11.9999
...(	chr18:70919709-70919962(-)$1	1	104	108	11.9999
....	chr12:57909800-57910018(+)$1	1	59	63	11.9999
....	chr7:6441120-6441385(+)$1	1	100	104	11.9999
....	chr11:10879317-10879587(-)$1	1	81	85	11.9999
.(((	chr10:93719619-93719873(+)$1	1	95	99	11.9999
....	chr6:31729776-31729987(+)$1	1	66	70	11.9999
....	chr6:163991610-163991868(+)$1	1	55	59	11.9999
))))	chr11:46765965-46766241(-)$1	1	20	24	11.9999
))..	chr17:57737483-57737713(+)$1	1	112	116	11.9999
(((.	chr18:2750240-2750461(+)$1	1	91	95	11.9999
(...	chr1:46736209-46736468(+)$1	1	16	20	11.9999

#PSSM
U : 0.85	u : 0.14	
C : 0.85	c : 0.14	
U : 0.85	u : 0.14	
U : 0.85	u : 0.14	

#score	1055.9999999999998
#seq	88
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_UTR_m3_run1.nuc.txt

#NT
UUUGU	chr11:116714919-116715217(-)$1	298	118	123	14.9999
UUUGU	chr3:124947360-124947679(-)$1	319	147	152	14.9999
UUUGU	chr13:34410434-34410699(+)$1	265	188	193	14.9999
uuugu	chr1:226171126-226171344(-)$1	218	122	127	14.9999
UUUGU	chr8:48975407-48975715(+)$1	308	20	25	14.9999
UUUGU	chr8:68108197-68108499(+)$1	302	111	116	14.9999
UUUGU	chr9:36399854-36400228(-)$1	374	108	113	14.9999
UUUGU	chr12:104179202-104179532(-)$1	330	268	273	14.9999
UUUGU	chr17:8076464-8076783(-)$1	319	33	38	14.9999
UUUGU	chr3:10320667-10320927(+)$1	260	126	131	14.9999
UUUGU	chr12:98989286-98989563(+)$1	277	50	55	14.9999
uuugu	chr21:30399978-30400315(+)$1	337	94	99	14.9999
UUUGU	chr15:23812476-23812777(+)$1	301	211	216	14.9999
UUUGU	chr4:74962857-74963150(-)$1	293	21	26	14.9999
UUUGU	chr1:109474398-109474643(-)$1	245	159	164	14.9999
UUUGU	chr7:151832169-151832402(-)$1	233	34	39	14.9999
UUUGU	chr21:40669883-40670116(-)$1	233	49	54	14.9999
uuugu	chr16:89835980-89836236(-)$1	256	151	156	14.9999
UUUGU	chr5:38968010-38968249(-)$1	239	100	105	14.9999
UUUGU	chr9:19378993-19379264(-)$1	271	75	80	14.9999
UUUGU	chr12:49082171-49082465(-)$1	294	86	91	14.9999
UUUGU	chr8:133025568-133025857(+)$1	289	143	148	14.9999
uuugu	chr15:60743529-60743779(-)$1	250	131	136	14.9999
uuugu	chr1:54511152-54511443(-)$1	291	244	249	14.9999
UUUGU	chrX:133905037-133905340(-)$1	303	223	228	14.9999
UUUGU	chr8:110348129-110348478(+)$1	349	185	190	14.9999
UUUGU	chr19:12299680-12300134(+)$1	454	70	75	14.9999
UUUGU	chr12:108953993-108954336(-)$1	343	111	116	14.9999
UUUGU	chr6:136581996-136582219(-)$1	223	33	38	14.9999
UUUGU	chr22:41258576-41258926(+)$1	350	132	137	14.9999
UUUGU	chr4:39063994-39064252(+)$1	258	88	93	14.9999
UUUGU	chr14:57700507-57700819(-)$1	312	131	136	14.9999
UUUGU	chr1:117645171-117645433(+)$1	262	47	52	14.9999
UUUGU	chr12:19672066-19672322(+)$1	256	87	92	14.9999
UUUGU	chr3:10320727-10320973(+)$1	246	66	71	14.9999
uuugu	chr7:112101646-112101958(+)$1	312	45	50	14.9999
UUUGU	chr1:12569385-12569641(+)$1	256	10	15	14.9999
UUUGU	chr5:79770511-79770799(+)$1	288	150	155	14.9999
UUUGU	chr21:40670022-40670239(-)$1	217	172	177	14.9999
UUUGU	chr5:36098578-36098833(-)$1	255	56	61	14.9999
UUUGU	chr18:13057858-13058144(+)$1	286	19	24	14.9999
UUUGU	chr13:38936918-38937141(+)$1	223	95	100	14.9999
UUUGU	chr4:24529172-24529417(-)$1	245	49	54	14.9999
UUUGU	chr2:44457276-44457621(+)$1	345	236	241	14.9999
UUUGU	chr7:116146645-116146902(+)$1	257	152	157	14.9999
UUUGU	chr14:103196651-103196883(+)$1	232	135	140	14.9999
UUUGU	chr7:22980809-22981081(-)$1	272	52	57	14.9999
UUUGU	chr10:121700456-121700728(+)$1	272	158	163	14.9999
UUUGU	chr1:14098437-14098697(+)$1	260	165	170	14.9999
UUUGU	chr8:62588137-62588401(-)$1	264	50	55	14.9999
UUUGU	chr7:120595774-120596037(+)$1	263	65	70	14.9999
UUUGU	chrX:70685655-70685914(+)$1	259	97	102	14.9999
UUUGU	chr7:22980881-22981179(-)$1	298	87	92	14.9999
UUUGU	chr4:13369386-13369636(-)$1	250	46	51	14.9999
UUUGU	chr15:38775243-38775573(+)$1	330	243	248	14.9999
UUUGU	chr1:185276887-185277140(-)$1	253	127	132	14.9999
UUUGU	chr6:136560831-136561114(-)$1	283	130	135	14.9999
uuuGU	chr3:140684926-140685182(+)$1	256	170	175	14.9999
UUUGU	chr9:91973650-91973973(+)$1	323	181	186	14.9999
UUUGU	chrX:23802217-23802472(+)$1	255	86	91	14.9999
UUUGU	chr2:128493071-128493352(-)$1	281	97	102	14.9999
UUUGU	chr12:67704354-67704674(+)$1	320	205	210	14.9999
UUUGU	chr1:21100170-21100385(-)$1	215	11	16	14.9999
UUUGU	chr7:91873256-91873527(-)$1	271	87	92	14.9999
UUUGU	chr6:116956703-116957075(-)$1	372	122	127	14.9999
UUUGU	chr17:56082495-56082700(-)$1	205	22	27	14.9999
UUUGU	chr6:24785899-24786146(+)$1	247	186	191	14.9999
UUUGU	chr16:85709617-85709883(+)$1	266	105	110	14.9999
UUUGU	chr2:39477264-39477575(-)$1	311	35	40	14.9999
UUUGU	chr13:38936941-38937169(+)$1	228	72	77	14.9999
UUUGU	chr4:54265886-54266220(+)$1	334	90	95	14.9999
uuugu	chr7:158432365-158432618(-)$1	253	125	130	14.9999
UUUGU	chr21:34106923-34107235(-)$1	312	28	33	14.9999
UUUGU	chr5:95223098-95223409(-)$1	311	291	296	14.9999
UUUGU	chr1:78414035-78414301(-)$1	266	58	63	14.9999
UUUGU	chr3:48014419-48014695(-)$1	276	19	24	14.9999
UUUGU	chr17:48828717-48828939(+)$1	222	95	100	14.9999

#otherMatches

#Struct PSSM
vvvvv	chr11:9316523-9316745(-)$1	222	155	160	14.9999
=====	chr11:116714919-116715217(-)$1	298	118	123	14.9999
eeeoo	chr3:124947360-124947679(-)$1	319	147	152	14.9999
]dddd	chr13:34410434-34410699(+)$1	265	188	193	14.9999
22ccc	chr1:226171126-226171344(-)$1	218	122	127	14.9999
eee!!	chr8:48975407-48975715(+)$1	308	20	25	14.9999
CC{EE	chr8:68108197-68108499(+)$1	302	111	116	14.9999
ffff3	chr9:36399854-36400228(-)$1	374	108	113	14.9999
nnnnn	chr12:104179202-104179532(-)$1	330	268	273	14.9999
JJJJJ	chr17:8076464-8076783(-)$1	319	33	38	14.9999
dddd[	chr3:10320667-10320927(+)$1	260	126	131	14.9999
qqqii	chr12:98989286-98989563(+)$1	277	50	55	14.9999
!!ddd	chr21:30399978-30400315(+)$1	337	94	99	14.9999
qqqee	chr15:23812476-23812777(+)$1	301	211	216	14.9999
GGGOO	chr4:74962857-74963150(-)$1	293	21	26	14.9999
=mmmm	chr1:109474398-109474643(-)$1	245	159	164	14.9999
:::::	chr7:151832169-151832402(-)$1	233	34	39	14.9999
c22a]	chr21:40669883-40670116(-)$1	233	49	54	14.9999
dddd7	chr16:89835980-89836236(-)$1	256	151	156	14.9999
::::g	chr5:38968010-38968249(-)$1	239	100	105	14.9999
BB{BB	chr9:19378993-19379264(-)$1	271	75	80	14.9999
DDDDW	chr12:49082171-49082465(-)$1	294	86	91	14.9999
===##	chr8:133025568-133025857(+)$1	289	143	148	14.9999
eeee3	chr15:60743529-60743779(-)$1	250	131	136	14.9999
eee]c	chr1:54511152-54511443(-)$1	291	244	249	14.9999
nnna2	chrX:133905037-133905340(-)$1	303	223	228	14.9999
eeee:	chr8:110348129-110348478(+)$1	349	185	190	14.9999
KKCCC	chr19:12299680-12300134(+)$1	454	70	75	14.9999
ggg44	chr12:108953993-108954336(-)$1	343	111	116	14.9999
iiiii	chr6:136581996-136582219(-)$1	223	33	38	14.9999
ee:::	chr22:41258576-41258926(+)$1	350	132	137	14.9999
hhhhh	chr4:39063994-39064252(+)$1	258	88	93	14.9999
@@@DD	chr14:57700507-57700819(-)$1	312	131	136	14.9999
mmmmc	chr1:117645171-117645433(+)$1	262	47	52	14.9999
:::ii	chr12:19672066-19672322(+)$1	256	87	92	14.9999
dddd[	chr3:10320727-10320973(+)$1	246	66	71	14.9999
hhhhh	chr7:112101646-112101958(+)$1	312	45	50	14.9999
ddd[b	chr1:12569385-12569641(+)$1	256	10	15	14.9999
::===	chr5:79770511-79770799(+)$1	288	150	155	14.9999
c22a]	chr21:40670022-40670239(-)$1	217	172	177	14.9999
e$$$$	chr5:36098578-36098833(-)$1	255	56	61	14.9999
:::::	chr18:13057858-13058144(+)$1	286	19	24	14.9999
eeeee	chr13:38936918-38937141(+)$1	223	95	100	14.9999
##bb[	chr4:24529172-24529417(-)$1	245	49	54	14.9999
ggg]h	chr2:44457276-44457621(+)$1	345	236	241	14.9999
JJJJJ	chr7:116146645-116146902(+)$1	257	152	157	14.9999
eee:h	chr14:103196651-103196883(+)$1	232	135	140	14.9999
gggee	chr7:22980809-22981081(-)$1	272	52	57	14.9999
JJJJ}	chr10:121700456-121700728(+)$1	272	158	163	14.9999
EEE::	chr1:14098437-14098697(+)$1	260	165	170	14.9999
JJJJJ	chr8:62588137-62588401(-)$1	264	50	55	14.9999
##fff	chr7:120595774-120596037(+)$1	263	65	70	14.9999
ccc[d	chrX:70685655-70685914(+)$1	259	97	102	14.9999
mmeee	chr7:22980881-22981179(-)$1	298	87	92	14.9999
:::cc	chr4:13369386-13369636(-)$1	250	46	51	14.9999
fff:d	chr15:38775243-38775573(+)$1	330	243	248	14.9999
ddhhh	chr1:185276887-185277140(-)$1	253	127	132	14.9999
iiiii	chr6:136560831-136561114(-)$1	283	130	135	14.9999
=====	chr3:140684926-140685182(+)$1	256	170	175	14.9999
##eee	chr9:91973650-91973973(+)$1	323	181	186	14.9999
fff!!	chrX:23802217-23802472(+)$1	255	86	91	14.9999
:::::	chr2:128493071-128493352(-)$1	281	97	102	14.9999
===="	chr12:67704354-67704674(+)$1	320	205	210	14.9999
d$$$$	chr1:21100170-21100385(-)$1	215	11	16	14.9999
00000	chr7:91873256-91873527(-)$1	271	87	92	14.9999
mhhhh	chr6:116956703-116957075(-)$1	372	122	127	14.9999
ooocc	chr17:56082495-56082700(-)$1	205	22	27	14.9999
:::::	chr6:24785899-24786146(+)$1	247	186	191	14.9999
fff[c	chr16:85709617-85709883(+)$1	266	105	110	14.9999
CEEEE	chr2:39477264-39477575(-)$1	311	35	40	14.9999
eeeee	chr13:38936941-38937169(+)$1	228	72	77	14.9999
=====	chr4:54265886-54266220(+)$1	334	90	95	14.9999
=====	chr7:158432365-158432618(-)$1	253	125	130	14.9999
LLLJJ	chr21:34106923-34107235(-)$1	312	28	33	14.9999
ffppp	chr5:95223098-95223409(-)$1	311	291	296	14.9999
c''''	chr1:78414035-78414301(-)$1	266	58	63	14.9999
EEEEE	chr3:48014419-48014695(-)$1	276	19	24	14.9999
ggggg	chr17:48828717-48828939(+)$1	222	95	100	14.9999

#DB
.....	chr11:9316523-9316745(-)$1	1	155	160	14.9999
)))))	chr11:116714919-116715217(-)$1	1	118	123	14.9999
(((..	chr3:124947360-124947679(-)$1	1	147	152	14.9999
.))))	chr13:34410434-34410699(+)$1	1	188	193	14.9999
..)))	chr1:226171126-226171344(-)$1	1	122	127	14.9999
(((..	chr8:48975407-48975715(+)$1	1	20	25	14.9999
((.((	chr8:68108197-68108499(+)$1	1	111	116	14.9999
)))).	chr9:36399854-36400228(-)$1	1	108	113	14.9999
.....	chr12:104179202-104179532(-)$1	1	268	273	14.9999
(((((	chr17:8076464-8076783(-)$1	1	33	38	14.9999
((((.	chr3:10320667-10320927(+)$1	1	126	131	14.9999
...))	chr12:98989286-98989563(+)$1	1	50	55	14.9999
..(((	chr21:30399978-30400315(+)$1	1	94	99	14.9999
...))	chr15:23812476-23812777(+)$1	1	211	216	14.9999
(((..	chr4:74962857-74963150(-)$1	1	21	26	14.9999
(....	chr1:109474398-109474643(-)$1	1	159	164	14.9999
.....	chr7:151832169-151832402(-)$1	1	34	39	14.9999
)..).	chr21:40669883-40670116(-)$1	1	49	54	14.9999
)))).	chr16:89835980-89836236(-)$1	1	151	156	14.9999
....(	chr5:38968010-38968249(-)$1	1	100	105	14.9999
((.((	chr9:19378993-19379264(-)$1	1	75	80	14.9999
((((.	chr12:49082171-49082465(-)$1	1	86	91	14.9999
(((..	chr8:133025568-133025857(+)$1	1	143	148	14.9999
)))).	chr15:60743529-60743779(-)$1	1	131	136	14.9999
))).)	chr1:54511152-54511443(-)$1	1	244	249	14.9999
...).	chrX:133905037-133905340(-)$1	1	223	228	14.9999
)))).	chr8:110348129-110348478(+)$1	1	185	190	14.9999
..(((	chr19:12299680-12300134(+)$1	1	70	75	14.9999
)))..	chr12:108953993-108954336(-)$1	1	111	116	14.9999
(((((	chr6:136581996-136582219(-)$1	1	33	38	14.9999
))...	chr22:41258576-41258926(+)$1	1	132	137	14.9999
)))))	chr4:39063994-39064252(+)$1	1	88	93	14.9999
...))	chr14:57700507-57700819(-)$1	1	131	136	14.9999
....)	chr1:117645171-117645433(+)$1	1	47	52	14.9999
...((	chr12:19672066-19672322(+)$1	1	87	92	14.9999
((((.	chr3:10320727-10320973(+)$1	1	66	71	14.9999
(((((	chr7:112101646-112101958(+)$1	1	45	50	14.9999
(((.(	chr1:12569385-12569641(+)$1	1	10	15	14.9999
..(((	chr5:79770511-79770799(+)$1	1	150	155	14.9999
)..).	chr21:40670022-40670239(-)$1	1	172	177	14.9999
(....	chr5:36098578-36098833(-)$1	1	56	61	14.9999
.....	chr18:13057858-13058144(+)$1	1	19	24	14.9999
)))))	chr13:38936918-38937141(+)$1	1	95	100	14.9999
..((.	chr4:24529172-24529417(-)$1	1	49	54	14.9999
))).)	chr2:44457276-44457621(+)$1	1	236	241	14.9999
)))))	chr7:116146645-116146902(+)$1	1	152	157	14.9999
))).(	chr14:103196651-103196883(+)$1	1	135	140	14.9999
)))))	chr7:22980809-22981081(-)$1	1	52	57	14.9999
)))).	chr10:121700456-121700728(+)$1	1	158	163	14.9999
(((..	chr1:14098437-14098697(+)$1	1	165	170	14.9999
(((((	chr8:62588137-62588401(-)$1	1	50	55	14.9999
..(((	chr7:120595774-120596037(+)$1	1	65	70	14.9999
(((.(	chrX:70685655-70685914(+)$1	1	97	102	14.9999
..)))	chr7:22980881-22981179(-)$1	1	87	92	14.9999
...((	chr4:13369386-13369636(-)$1	1	46	51	14.9999
))).(	chr15:38775243-38775573(+)$1	1	243	248	14.9999
(((((	chr1:185276887-185277140(-)$1	1	127	132	14.9999
)))))	chr6:136560831-136561114(-)$1	1	130	135	14.9999
(((((	chr3:140684926-140685182(+)$1	1	170	175	14.9999
..(((	chr9:91973650-91973973(+)$1	1	181	186	14.9999
(((..	chrX:23802217-23802472(+)$1	1	86	91	14.9999
.....	chr2:128493071-128493352(-)$1	1	97	102	14.9999
((((.	chr12:67704354-67704674(+)$1	1	205	210	14.9999
(....	chr1:21100170-21100385(-)$1	1	11	16	14.9999
.....	chr7:91873256-91873527(-)$1	1	87	92	14.9999
.))))	chr6:116956703-116957075(-)$1	1	122	127	14.9999
...))	chr17:56082495-56082700(-)$1	1	22	27	14.9999
.....	chr6:24785899-24786146(+)$1	1	186	191	14.9999
(((.(	chr16:85709617-85709883(+)$1	1	105	110	14.9999
(((((	chr2:39477264-39477575(-)$1	1	35	40	14.9999
)))))	chr13:38936941-38937169(+)$1	1	72	77	14.9999
)))))	chr4:54265886-54266220(+)$1	1	90	95	14.9999
)))))	chr7:158432365-158432618(-)$1	1	125	130	14.9999
...((	chr21:34106923-34107235(-)$1	1	28	33	14.9999
((...	chr5:95223098-95223409(-)$1	1	291	296	14.9999
(....	chr1:78414035-78414301(-)$1	1	58	63	14.9999
(((((	chr3:48014419-48014695(-)$1	1	19	24	14.9999
(((((	chr17:48828717-48828939(+)$1	1	95	100	14.9999

#PSSM
U : 0.89	u : 0.10	
U : 0.89	u : 0.10	
U : 0.89	u : 0.10	
G : 0.91	g : 0.08	
U : 0.91	u : 0.08	

#score	1169.9999999999998
#seq	78
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_UTR_m2_run2.nuc.txt

#NT
ccgcugcug	chrX:20284756-20285018(-)$1	262	116	125	15.9423
CGGCGGCUG	chr1:174968973-174969339(+)$1	366	141	150	16.9038
AGGCAGCUG	chr3:184049157-184049443(+)$1	286	174	183	14.4038
CAGCUGCAG	chr16:88782520-88782776(-)$1	256	158	167	13.3461
GGGCUGCCG	chr14:23564651-23564953(+)$1	302	64	73	14.3076
CUGCUGCGG	chr5:75699069-75699318(+)$1	249	44	53	13.6346
AGGCUGCAG	chr12:62940673-62940951(+)$1	278	3	12	14.3076
UGGCUGCUG	chr2:153532960-153533239(-)$1	279	20	29	17.2884
AAGCUGCUG	chr1:154148601-154148826(-)$1	225	214	223	13.8269
CGCCUGCUG	chr6:26123600-26123839(-)$1	239	4	13	15.4615
UGGCUGAUG	chr6:56351809-56352105(-)$1	296	119	128	12.8653
CGGCCGCUG	chr14:36278253-36278537(-)$1	284	187	196	16.7115
GGGCUGCGG	chr7:94285765-94285993(+)$1	228	42	51	14.7884
UGUCUGCUG	chr9:91926079-91926332(+)$1	253	71	80	12.7692
UGGCUGCUC	chr6:32945897-32946149(+)$1	252	27	36	12.7692
CGGCUCCUG	chr6:64282258-64282521(+)$1	263	34	43	14.9807
CGGCUGCUG	chr2:28974794-28975051(+)$1	257	235	244	19.7884
UGGCUGCUC	chr12:62929290-62929591(+)$1	301	61	70	12.7692
CAGCUGCUG	chr19:44118334-44118651(-)$1	317	153	162	16.3269
CGCCUGCUG	chr18:13052816-13053057(+)$1	241	181	190	15.4615
GGGCUGCUG	chr16:2152396-2152633(-)$1	237	135	144	17.4807
CGGCCGCUG	chr2:159313506-159313743(+)$1	237	202	211	16.7115
CGGCUGCUG	chr5:102455923-102456269(+)$1	346	330	339	19.7884
CGGCUGCCG	chr12:123997886-123998189(-)$1	303	158	167	16.6153
CGGCAGCGG	chr4:83294796-83295083(-)$1	287	163	172	14.2115
UGGCUGCUG	chr12:123998383-123998636(-)$1	253	197	206	17.2884
GGGCUGCUG	chr17:78237331-78237599(+)$1	268	15	24	17.4807
CAGCUGCUG	chr3:184045561-184045873(+)$1	312	170	179	16.3269
CGGCGGCGG	chr14:90863424-90863682(+)$1	258	11	20	14.2115
CAGCUGCUG	chr10:697633-697887(-)$1	254	141	150	16.3269
CGGCGGCUG	chr12:76953301-76953602(-)$1	301	108	117	16.9038
CGGCGGCGG	chr12:56709504-56709710(-)$1	206	83	92	14.2115
cggcugcug	chr2:62932898-62933159(+)$1	261	209	218	19.7884
CGGCCGCAG	chr7:6746354-6746631(-)$1	277	46	55	13.7307
CGGCGGCAG	chr3:184033077-184033354(+)$1	277	1	10	13.9230
CGGCUGCCG	chr17:40169267-40169552(-)$1	285	122	131	16.6153
CUGCAGCUG	chr10:113943250-113943536(-)$1	286	19	28	13.4423
GGGCUGGUG	chr17:48797003-48797288(+)$1	285	56	65	12.9615
AGGCUGUUG	chr21:44269611-44269861(-)$1	250	158	167	12.7692
CGCCUGCUG	chr16:2143715-2144056(-)$1	341	65	74	15.4615
GUGCUGCUG	chr15:28501248-28501518(-)$1	270	223	232	14.0192
CGGCUGCGG	chr14:55369278-55369607(-)$1	329	210	219	17.0961
AGGCUGCUG	chr12:123997747-123998010(-)$1	263	3	12	17.2884
CGGCGGCUG	chr22:22221688-22221981(-)$1	293	137	146	16.9038
GGGCUGAUG	chr4:78978929-78979200(+)$1	271	63	72	13.0576
CGGCAGCGG	chr10:96305506-96305783(+)$1	277	91	100	14.2115
AGGCUGCGG	chr2:231729570-231729844(+)$1	274	136	145	14.5961
CUGCCGCUG	chr2:128848779-128849056(+)$1	277	78	87	13.2500
CUGCUGCUG	chr9:128003295-128003546(-)$1	251	115	124	16.3269
GGGCAGCUG	chr18:3247720-3247980(+)$1	260	244	253	14.5961
CGGCUGCUU	chr15:91537536-91537823(-)$1	287	155	164	15.1730

#otherMatches

#Struct PSSM
gggg[bb!!	chr1:205718987-205719261(-)$1	274	47	56	13.9230
eee]eeeee	chrX:20284756-20285018(-)$1	262	116	125	15.9423
d:ffffffe	chr1:174968973-174969339(+)$1	366	141	150	16.9038
f####eeee	chr3:184049157-184049443(+)$1	286	174	183	14.4038
bmmmmbb:e	chr16:88782520-88782776(-)$1	256	158	167	13.3461
GGGG{FFFF	chr14:23564651-23564953(+)$1	302	64	73	14.3076
gggggggnn	chr5:75699069-75699318(+)$1	249	44	53	13.6346
::CCCLLLI	chr12:62940673-62940951(+)$1	278	3	12	14.3076
ggggggg[b	chr2:153532960-153533239(-)$1	279	20	29	17.2884
ndddd]bb:	chr1:154148601-154148826(-)$1	225	214	223	13.8269
dccc[ccc[	chr6:26123600-26123839(-)$1	239	4	13	15.4615
EEEEE:ccc	chr6:56351809-56352105(-)$1	296	119	128	12.8653
b[ffffff[	chr14:36278253-36278537(-)$1	284	187	196	16.7115
odddd]ccc	chr7:94285765-94285993(+)$1	228	42	51	14.7884
{EEEEEKKH	chr9:91926079-91926332(+)$1	253	71	80	12.7692
dd]cccddd	chr6:32945897-32946149(+)$1	252	27	36	12.7692
aBB{BB{DD	chr6:64282258-64282521(+)$1	263	34	43	14.9807
dddlllddd	chr2:28974794-28975051(+)$1	257	235	244	19.7884
tdddd::::	chr12:62929290-62929591(+)$1	301	61	70	12.7692
hhhhhh!!d	chr19:44118334-44118651(-)$1	317	153	162	16.3269
iiiiimmmm	chr18:13052816-13053057(+)$1	241	181	190	15.4615
ffffmmmmf	chr16:2152396-2152633(-)$1	237	135	144	17.4807
A}FFFFFF}	chr2:159313506-159313743(+)$1	237	202	211	16.7115
bb22ccc:D	chr5:102455923-102456269(+)$1	346	330	339	19.7884
KGGGGGGG:	chr12:123997886-123998189(-)$1	303	158	167	16.6153
c[bb[bb[b	chr4:83294796-83295083(-)$1	287	163	172	14.2115
:ddddafff	chr12:123998383-123998636(-)$1	253	197	206	17.2884
GGGGGFFFF	chr17:78237331-78237599(+)$1	268	15	24	17.4807
======ooo	chr3:184045561-184045873(+)$1	312	170	179	16.3269
{EEEEE{BB	chr14:90863424-90863682(+)$1	258	11	20	14.2115
bbCCCKKFF	chr10:697633-697887(-)$1	254	141	150	16.3269
IIIIIIIII	chr12:76953301-76953602(-)$1	301	108	117	16.9038
ccc]ccc22	chr12:56709504-56709710(-)$1	206	83	92	14.2115
eeeemmmme	chr2:62932898-62933159(+)$1	261	209	218	19.7884
EEEEE:GGG	chr7:6746354-6746631(-)$1	277	46	55	13.7307
ddd[dddd[	chr3:184033077-184033354(+)$1	277	1	10	13.9230
dbb[fffff	chr17:40169267-40169552(-)$1	285	122	131	16.6153
hhhhhhhh[	chr10:113943250-113943536(-)$1	286	19	28	13.4423
c!!bbmmmm	chr17:48797003-48797288(+)$1	285	56	65	12.9615
:eeeee%%%	chr21:44269611-44269861(-)$1	250	158	167	12.7692
cmmmmccc]	chr16:2143715-2144056(-)$1	341	65	74	15.4615
=========	chr15:28501248-28501518(-)$1	270	223	232	14.0192
bbbgggggg	chr14:55369278-55369607(-)$1	329	210	219	17.0961
:ccc[ffff	chr12:123997747-123998010(-)$1	263	3	12	17.2884
ccc[fffff	chr22:22221688-22221981(-)$1	293	137	146	16.9038
eeee[bb[d	chr4:78978929-78979200(+)$1	271	63	72	13.0576
e[dddd!!h	chr10:96305506-96305783(+)$1	277	91	100	14.2115
$$$eeeee[	chr2:231729570-231729844(+)$1	274	136	145	14.5961
""bbccc[e	chr2:128848779-128849056(+)$1	277	78	87	13.2500
cccc[ffff	chr9:128003295-128003546(-)$1	251	115	124	16.3269
eeGGGGGGG	chr18:3247720-3247980(+)$1	260	244	253	14.5961
ggggg]aBB	chr15:91537536-91537823(-)$1	287	155	164	15.1730

#DB
((((.((..	chr1:205718987-205719261(-)$1	1	47	56	13.9230
))).)))))	chrX:20284756-20285018(-)$1	1	116	125	15.9423
).(((((((	chr1:174968973-174969339(+)$1	1	141	150	16.9038
(....((((	chr3:184049157-184049443(+)$1	1	174	183	14.4038
(....)).(	chr16:88782520-88782776(-)$1	1	158	167	13.3461
((((.((((	chr14:23564651-23564953(+)$1	1	64	73	14.3076
(((((((..	chr5:75699069-75699318(+)$1	1	44	53	13.6346
..(((...(	chr12:62940673-62940951(+)$1	1	3	12	14.3076
(((((((.(	chr2:153532960-153533239(-)$1	1	20	29	17.2884
.)))).)).	chr1:154148601-154148826(-)$1	1	214	223	13.8269
((((.(((.	chr6:26123600-26123839(-)$1	1	4	13	15.4615
))))).(((	chr6:56351809-56352105(-)$1	1	119	128	12.8653
(.((((((.	chr14:36278253-36278537(-)$1	1	187	196	16.7115
.)))).)))	chr7:94285765-94285993(+)$1	1	42	51	14.7884
.(((((..(	chr9:91926079-91926332(+)$1	1	71	80	12.7692
)).)))(((	chr6:32945897-32946149(+)$1	1	27	36	12.7692
)((.((.((	chr6:64282258-64282521(+)$1	1	34	43	14.9807
(((...)))	chr2:28974794-28975051(+)$1	1	235	244	19.7884
.))))....	chr12:62929290-62929591(+)$1	1	61	70	12.7692
((((((..(	chr19:44118334-44118651(-)$1	1	153	162	16.3269
(((((....	chr18:13052816-13053057(+)$1	1	181	190	15.4615
((((....)	chr16:2152396-2152633(-)$1	1	135	144	17.4807
).)))))).	chr2:159313506-159313743(+)$1	1	202	211	16.7115
))..))).)	chr5:102455923-102456269(+)$1	1	330	339	19.7884
.(((((((.	chr12:123997886-123998189(-)$1	1	158	167	16.6153
(.((.((.(	chr4:83294796-83295083(-)$1	1	163	172	14.2115
.((((((((	chr12:123998383-123998636(-)$1	1	197	206	17.2884
(((((((((	chr17:78237331-78237599(+)$1	1	15	24	17.4807
((((((...	chr3:184045561-184045873(+)$1	1	170	179	16.3269
.(((((.((	chr14:90863424-90863682(+)$1	1	11	20	14.2115
))(((..((	chr10:697633-697887(-)$1	1	141	150	16.3269
(((((((((	chr12:76953301-76953602(-)$1	1	108	117	16.9038
))).)))..	chr12:56709504-56709710(-)$1	1	83	92	14.2115
((((....)	chr2:62932898-62933159(+)$1	1	209	218	19.7884
(((((.(((	chr7:6746354-6746631(-)$1	1	46	55	13.7307
(((.((((.	chr3:184033077-184033354(+)$1	1	1	10	13.9230
(((.(((((	chr17:40169267-40169552(-)$1	1	122	131	16.6153
((((((((.	chr10:113943250-113943536(-)$1	1	19	28	13.4423
(..((....	chr17:48797003-48797288(+)$1	1	56	65	12.9615
.(((((...	chr21:44269611-44269861(-)$1	1	158	167	12.7692
(....))).	chr16:2143715-2144056(-)$1	1	65	74	15.4615
)))))))))	chr15:28501248-28501518(-)$1	1	223	232	14.0192
)))))))))	chr14:55369278-55369607(-)$1	1	210	219	17.0961
.(((.((((	chr12:123997747-123998010(-)$1	1	3	12	17.2884
(((.(((((	chr22:22221688-22221981(-)$1	1	137	146	16.9038
((((.((.(	chr4:78978929-78979200(+)$1	1	63	72	13.0576
(.((((..(	chr10:96305506-96305783(+)$1	1	91	100	14.2115
...(((((.	chr2:231729570-231729844(+)$1	1	136	145	14.5961
..(((((.(	chr2:128848779-128849056(+)$1	1	78	87	13.2500
)(((.((((	chr9:128003295-128003546(-)$1	1	115	124	16.3269
)))))))))	chr18:3247720-3247980(+)$1	1	244	253	14.5961
))))).)))	chr15:91537536-91537823(-)$1	1	155	164	15.1730

#PSSM
C : 0.57	G : 0.15	A : 0.11	U : 0.11	c : 0.03	
G : 0.76	A : 0.09	U : 0.09	c : 0.01	g : 0.01	
G : 0.88	C : 0.05	g : 0.03	U : 0.01	
C : 0.96	c : 0.03	
U : 0.65	A : 0.11	G : 0.11	C : 0.07	u : 0.03	
G : 0.94	g : 0.03	C : 0.01	
C : 0.88	c : 0.03	A : 0.03	G : 0.01	U : 0.01	
U : 0.65	G : 0.15	A : 0.09	C : 0.05	u : 0.03	
G : 0.90	g : 0.03	C : 0.03	U : 0.01	

#score	795.3461538461543
#seq	52
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_transcript_m2_run1.nuc.txt

#NT
AGAAGA	chr2:232326468-232326749(-)$1	281	34	40	18.0000
AGAAGA	chr7:120690741-120690993(+)$1	252	228	234	18.0000
AGAAGA	chr1:25568863-25569129(-)$1	266	51	57	18.0000
AGAAGA	chr19:14199936-14200224(-)$1	288	58	64	18.0000
agaaga	chr8:95541195-95541527(-)$1	332	69	75	18.0000
AGAAGA	chr11:93469272-93469568(-)$1	296	151	157	18.0000
AGAAGA	chr20:13756481-13756854(-)$1	373	272	278	18.0000
agaaga	chr2:232325279-232325482(-)$1	203	5	11	18.0000
AGAAGA	chr4:4276187-4276502(-)$1	315	130	136	18.0000
AGAAGA	chr1:156531838-156532104(-)$1	266	224	230	18.0000
AGAAGA	chr11:9461935-9462252(+)$1	317	169	175	18.0000
agaaga	chr9:100773519-100773771(+)$1	252	37	43	18.0000
agaaga	chr10:76781704-76782056(+)$1	352	122	128	18.0000
agaaga	chr7:127975784-127976042(-)$1	258	58	64	18.0000
AGAAGA	chr5:137892159-137892382(-)$1	223	115	121	18.0000
agaaga	chr12:104341061-104341293(+)$1	232	32	38	18.0000
agaaga	chr11:65267268-65267500(+)$1	232	39	45	18.0000
agaaga	chr6:44218023-44218290(+)$1	267	152	158	18.0000
AGAAGA	chr1:214819602-214819869(+)$1	267	30	36	18.0000
AGAAGA	chr17:20279548-20279858(-)$1	310	37	43	18.0000
AGAAGA	chr9:131456819-131457021(+)$1	202	111	117	18.0000
AGAAGA	chr5:145850113-145850406(+)$1	293	92	98	18.0000
AGAAGA	chr6:7301652-7301906(-)$1	254	156	162	18.0000
agaaga	chr1:94341748-94342023(-)$1	275	119	125	18.0000
agaaga	chr9:131456140-131456389(+)$1	249	66	72	18.0000
agaaga	chr14:91689590-91689853(+)$1	263	204	210	18.0000
AGAAGA	chr1:78409662-78409945(-)$1	283	10	16	18.0000
AGAAGA	chrX:135593120-135593364(+)$1	244	66	72	18.0000
AGAAGA	chr18:13124759-13125100(+)$1	341	214	220	18.0000
agaaga	chr9:116171005-116171267(-)$1	262	49	55	18.0000
AGAAGA	chr10:103558740-103559050(-)$1	310	4	10	18.0000
AGAAGA	chr7:75045780-75046080(+)$1	300	46	52	18.0000
AGAAGA	chr4:6709697-6710060(-)$1	363	159	165	18.0000
AGAAGA	chr19:2114077-2114348(-)$1	271	139	145	18.0000
AGAAGA	chr12:6687910-6688147(-)$1	237	125	131	18.0000
agaaga	chr9:131456189-131456396(+)$1	207	17	23	18.0000
AGAAGA	chr7:11022555-11022818(+)$1	263	136	142	18.0000
AGAAGA	chrX:53438670-53438916(-)$1	246	88	94	18.0000
agaaga	chr4:13338728-13338982(+)$1	254	169	175	18.0000
AGAAGA	chr14:73574431-73574672(+)$1	241	134	140	18.0000
AGAAGA	chr5:162902416-162902758(+)$1	342	105	111	18.0000
agaaga	chr1:52305947-52306221(-)$1	274	125	131	18.0000
AGAAGA	chr3:44795609-44795902(-)$1	293	89	95	18.0000
agaaga	chr11:65267027-65267230(+)$1	203	83	89	18.0000
AGAAGA	chr9:134353928-134354190(+)$1	262	51	57	18.0000
AGAAGA	chr2:37316747-37317082(+)$1	335	35	41	18.0000
AGAAGA	chrX:118971672-118971936(-)$1	264	21	27	18.0000
AGAAGA	chr22:22024356-22024604(+)$1	248	55	61	18.0000
AGAAGA	chr6:31856963-31857220(-)$1	257	129	135	18.0000
AGAAGA	chr3:142761906-142762188(+)$1	282	133	139	18.0000
AGAAGA	chr20:39713095-39713309(+)$1	214	89	95	18.0000
AGAAGA	chr20:31024532-31024807(+)$1	275	91	97	18.0000
AGAAGA	chr14:58737551-58737821(+)$1	270	140	146	18.0000
AGAAGA	chr9:100774604-100774817(+)$1	213	100	106	18.0000
agaaga	chr1:6283541-6283804(-)$1	263	80	86	18.0000
AGAAGA	chr7:11022475-11022755(+)$1	280	216	222	18.0000
AGAAGA	chr1:35653500-35653741(-)$1	241	69	75	18.0000

#otherMatches

#Struct PSSM
3iiiii	chr14:21821545-21821791(-)$1	246	95	101	18.0000
dddd::	chr2:232326468-232326749(-)$1	281	34	40	18.0000
::::::	chr7:120690741-120690993(+)$1	252	228	234	18.0000
::::::	chr1:25568863-25569129(-)$1	266	51	57	18.0000
ee::::	chr19:14199936-14200224(-)$1	288	58	64	18.0000
::::::	chr8:95541195-95541527(-)$1	332	69	75	18.0000
ff22cc	chr11:93469272-93469568(-)$1	296	151	157	18.0000
eeee44	chr20:13756481-13756854(-)$1	373	272	278	18.0000
:::::f	chr2:232325279-232325482(-)$1	203	5	11	18.0000
^^^^^^	chr4:4276187-4276502(-)$1	315	130	136	18.0000
????EE	chr1:156531838-156532104(-)$1	266	224	230	18.0000
d(((((	chr11:9461935-9462252(+)$1	317	169	175	18.0000
^^^^^^	chr9:100773519-100773771(+)$1	252	37	43	18.0000
{CCC{D	chr10:76781704-76782056(+)$1	352	122	128	18.0000
::::::	chr7:127975784-127976042(-)$1	258	58	64	18.0000
======	chr5:137892159-137892382(-)$1	223	115	121	18.0000
^^^^^^	chr12:104341061-104341293(+)$1	232	32	38	18.0000
FFFFKK	chr11:65267268-65267500(+)$1	232	39	45	18.0000
::::::	chr6:44218023-44218290(+)$1	267	152	158	18.0000
yeeeee	chr1:214819602-214819869(+)$1	267	30	36	18.0000
::::::	chr17:20279548-20279858(-)$1	310	37	43	18.0000
=====]	chr9:131456819-131457021(+)$1	202	111	117	18.0000
c333ii	chr5:145850113-145850406(+)$1	293	92	98	18.0000
""ccc!	chr6:7301652-7301906(-)$1	254	156	162	18.0000
wwwwww	chr1:94341748-94342023(-)$1	275	119	125	18.0000
a]bb::	chr9:131456140-131456389(+)$1	249	66	72	18.0000
ccc]bb	chr14:91689590-91689853(+)$1	263	204	210	18.0000
JJ::::	chr1:78409662-78409945(-)$1	283	10	16	18.0000
bb4444	chrX:135593120-135593364(+)$1	244	66	72	18.0000
cc::::	chr18:13124759-13125100(+)$1	341	214	220	18.0000
::::::	chr9:116171005-116171267(-)$1	262	49	55	18.0000
::::::	chr10:103558740-103559050(-)$1	310	4	10	18.0000
[a!!cc	chr7:75045780-75046080(+)$1	300	46	52	18.0000
xxxxxx	chr4:6709697-6710060(-)$1	363	159	165	18.0000
a333dd	chr19:2114077-2114348(-)$1	271	139	145	18.0000
qqqqqd	chr12:6687910-6688147(-)$1	237	125	131	18.0000
::::::	chr9:131456189-131456396(+)$1	207	17	23	18.0000
:::::e	chr7:11022555-11022818(+)$1	263	136	142	18.0000
::::::	chrX:53438670-53438916(-)$1	246	88	94	18.0000
::::::	chr4:13338728-13338982(+)$1	254	169	175	18.0000
======	chr14:73574431-73574672(+)$1	241	134	140	18.0000
GGGG::	chr5:162902416-162902758(+)$1	342	105	111	18.0000
::::DD	chr1:52305947-52306221(-)$1	274	125	131	18.0000
OOJJJJ	chr3:44795609-44795902(-)$1	293	89	95	18.0000
nnnddd	chr11:65267027-65267230(+)$1	203	83	89	18.0000
^^^^^^	chr9:134353928-134354190(+)$1	262	51	57	18.0000
bppppp	chr2:37316747-37317082(+)$1	335	35	41	18.0000
:HHHHH	chrX:118971672-118971936(-)$1	264	21	27	18.0000
[ddddo	chr22:22024356-22024604(+)$1	248	55	61	18.0000
::::::	chr6:31856963-31857220(-)$1	257	129	135	18.0000
ccca]f	chr3:142761906-142762188(+)$1	282	133	139	18.0000
^^^^^f	chr20:39713095-39713309(+)$1	214	89	95	18.0000
eee[gg	chr20:31024532-31024807(+)$1	275	91	97	18.0000
IIIII:	chr14:58737551-58737821(+)$1	270	140	146	18.0000
nfffff	chr9:100774604-100774817(+)$1	213	100	106	18.0000
ddgggg	chr1:6283541-6283804(-)$1	263	80	86	18.0000
:::::e	chr7:11022475-11022755(+)$1	280	216	222	18.0000
::::::	chr1:35653500-35653741(-)$1	241	69	75	18.0000

#DB
.)))))	chr14:21821545-21821791(-)$1	1	95	101	18.0000
))))..	chr2:232326468-232326749(-)$1	1	34	40	18.0000
......	chr7:120690741-120690993(+)$1	1	228	234	18.0000
......	chr1:25568863-25569129(-)$1	1	51	57	18.0000
))....	chr19:14199936-14200224(-)$1	1	58	64	18.0000
......	chr8:95541195-95541527(-)$1	1	69	75	18.0000
))..))	chr11:93469272-93469568(-)$1	1	151	157	18.0000
))))..	chr20:13756481-13756854(-)$1	1	272	278	18.0000
.....(	chr2:232325279-232325482(-)$1	1	5	11	18.0000
......	chr4:4276187-4276502(-)$1	1	130	136	18.0000
....))	chr1:156531838-156532104(-)$1	1	224	230	18.0000
(.....	chr11:9461935-9462252(+)$1	1	169	175	18.0000
......	chr9:100773519-100773771(+)$1	1	37	43	18.0000
.(((.(	chr10:76781704-76782056(+)$1	1	122	128	18.0000
......	chr7:127975784-127976042(-)$1	1	58	64	18.0000
))))))	chr5:137892159-137892382(-)$1	1	115	121	18.0000
......	chr12:104341061-104341293(+)$1	1	32	38	18.0000
((((..	chr11:65267268-65267500(+)$1	1	39	45	18.0000
......	chr6:44218023-44218290(+)$1	1	152	158	18.0000
.)))))	chr1:214819602-214819869(+)$1	1	30	36	18.0000
......	chr17:20279548-20279858(-)$1	1	37	43	18.0000
))))).	chr9:131456819-131457021(+)$1	1	111	117	18.0000
)...))	chr5:145850113-145850406(+)$1	1	92	98	18.0000
..(((.	chr6:7301652-7301906(-)$1	1	156	162	18.0000
......	chr1:94341748-94342023(-)$1	1	119	125	18.0000
).))..	chr9:131456140-131456389(+)$1	1	66	72	18.0000
))).))	chr14:91689590-91689853(+)$1	1	204	210	18.0000
((....	chr1:78409662-78409945(-)$1	1	10	16	18.0000
))....	chrX:135593120-135593364(+)$1	1	66	72	18.0000
))....	chr18:13124759-13125100(+)$1	1	214	220	18.0000
......	chr9:116171005-116171267(-)$1	1	49	55	18.0000
......	chr10:103558740-103559050(-)$1	1	4	10	18.0000
.(..((	chr7:75045780-75046080(+)$1	1	46	52	18.0000
......	chr4:6709697-6710060(-)$1	1	159	165	18.0000
)...))	chr19:2114077-2114348(-)$1	1	139	145	18.0000
.....)	chr12:6687910-6688147(-)$1	1	125	131	18.0000
......	chr9:131456189-131456396(+)$1	1	17	23	18.0000
.....(	chr7:11022555-11022818(+)$1	1	136	142	18.0000
......	chrX:53438670-53438916(-)$1	1	88	94	18.0000
......	chr4:13338728-13338982(+)$1	1	169	175	18.0000
((((((	chr14:73574431-73574672(+)$1	1	134	140	18.0000
((((..	chr5:162902416-162902758(+)$1	1	105	111	18.0000
....))	chr1:52305947-52306221(-)$1	1	125	131	18.0000
..((((	chr3:44795609-44795902(-)$1	1	89	95	18.0000
...)))	chr11:65267027-65267230(+)$1	1	83	89	18.0000
......	chr9:134353928-134354190(+)$1	1	51	57	18.0000
(.....	chr2:37316747-37317082(+)$1	1	35	41	18.0000
.(((((	chrX:118971672-118971936(-)$1	1	21	27	18.0000
.((((.	chr22:22024356-22024604(+)$1	1	55	61	18.0000
......	chr6:31856963-31857220(-)$1	1	129	135	18.0000
)))).)	chr3:142761906-142762188(+)$1	1	133	139	18.0000
.....)	chr20:39713095-39713309(+)$1	1	89	95	18.0000
(((.((	chr20:31024532-31024807(+)$1	1	91	97	18.0000
(((((.	chr14:58737551-58737821(+)$1	1	140	146	18.0000
.)))))	chr9:100774604-100774817(+)$1	1	100	106	18.0000
((((((	chr1:6283541-6283804(-)$1	1	80	86	18.0000
.....(	chr7:11022475-11022755(+)$1	1	216	222	18.0000
......	chr1:35653500-35653741(-)$1	1	69	75	18.0000

#PSSM
A : 0.70	a : 0.29	
G : 0.70	g : 0.29	
A : 0.70	a : 0.29	
A : 0.70	a : 0.29	
G : 0.70	g : 0.29	
A : 0.70	a : 0.29	

#score	1044.0000000000002
#seq	58
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_UTR_m1_run2.nuc.txt

#NT
cuggg	chr22:50013845-50014161(-)$1	316	91	96	14.9999
CUGGG	chr7:1132622-1132891(-)$1	269	123	128	14.9999
CUGGG	chr22:20050697-20050991(+)$1	294	94	99	14.9999
CUGGG	chr19:2270320-2270598(+)$1	278	198	203	14.9999
CUGGG	chr5:71490576-71490832(+)$1	256	74	79	14.9999
CUGGG	chr9:134349890-134350156(+)$1	266	153	158	14.9999
CUGGG	chr7:1131212-1131475(-)$1	263	62	67	14.9999
CUGGG	chr16:89348127-89348411(-)$1	284	178	183	14.9999
cuggg	chr14:105714222-105714487(-)$1	265	132	137	14.9999
CUGGG	chr16:87736083-87736342(-)$1	259	110	115	14.9999
CUGGG	chr7:1887361-1887627(-)$1	266	33	38	14.9999
CUGGG	chr1:144931745-144931962(-)$1	217	125	130	14.9999
CUGGG	chr19:39138284-39138537(+)$1	253	211	216	14.9999
CUGGG	chr16:89350307-89350602(-)$1	295	223	228	14.9999
CUGGG	chr7:1887475-1887711(-)$1	236	32	37	14.9999
CUGGG	chr5:71490506-71490752(+)$1	246	144	149	14.9999
CUGGG	chr16:89350125-89350439(-)$1	314	60	65	14.9999
CUGGG	chr7:1132490-1132768(-)$1	278	0	5	14.9999
CUGGG	chr7:100730254-100730506(+)$1	252	241	246	14.9999
CUGGG	chr8:94752685-94752943(-)$1	258	189	194	14.9999
CUGGG	chr9:134351607-134351899(+)$1	292	86	91	14.9999
CUGGG	chr7:1887656-1887908(-)$1	252	11	16	14.9999
CUGGG	chrX:153592597-153592830(-)$1	233	29	34	14.9999
CUGGG	chr19:13264606-13264852(+)$1	246	156	161	14.9999
CUGGG	chr9:134350659-134350947(+)$1	288	136	141	14.9999
cuggg	chr9:139560096-139560352(+)$1	256	227	232	14.9999
CUGGG	chr16:89346585-89346860(-)$1	275	193	198	14.9999
CUGGG	chr1:245026257-245026508(-)$1	251	225	230	14.9999
CUGGG	chr16:89350264-89350500(-)$1	236	121	126	14.9999
CUGGG	chr4:1229669-1229957(-)$1	288	56	61	14.9999
cuggg	chr10:71075446-71075713(+)$1	267	138	143	14.9999
CUGGG	chr8:94752885-94753182(-)$1	297	133	138	14.9999
CUGGG	chr16:87735153-87735409(-)$1	256	222	227	14.9999
CUGGG	chr22:21801092-21801341(+)$1	249	31	36	14.9999
CUGGG	chr8:94753045-94753286(-)$1	241	84	89	14.9999
CUGGG	chr16:87734510-87734761(-)$1	251	147	152	14.9999
CUGGG	chr19:55558594-55558900(+)$1	306	90	95	14.9999

#otherMatches

#Struct PSSM
clllc	chr4:759905-760180(-)$1	275	105	110	14.9999
CA{II	chr22:50013845-50014161(-)$1	316	91	96	14.9999
BGGGG	chr7:1132622-1132891(-)$1	269	123	128	14.9999
ddddd	chr22:20050697-20050991(+)$1	294	94	99	14.9999
ggggg	chr19:2270320-2270598(+)$1	278	198	203	14.9999
lllgg	chr5:71490576-71490832(+)$1	256	74	79	14.9999
gggdd	chr9:134349890-134350156(+)$1	266	153	158	14.9999
aeeee	chr7:1131212-1131475(-)$1	263	62	67	14.9999
ggggg	chr16:89348127-89348411(-)$1	284	178	183	14.9999
hhhhh	chr14:105714222-105714487(-)$1	265	132	137	14.9999
dd22a	chr16:87736083-87736342(-)$1	259	110	115	14.9999
::::i	chr7:1887361-1887627(-)$1	266	33	38	14.9999
ffddd	chr1:144931745-144931962(-)$1	217	125	130	14.9999
HHHH}	chr19:39138284-39138537(+)$1	253	211	216	14.9999
eeeeo	chr16:89350307-89350602(-)$1	295	223	228	14.9999
dddff	chr7:1887475-1887711(-)$1	236	32	37	14.9999
lllgg	chr5:71490506-71490752(+)$1	246	144	149	14.9999
eeeeo	chr16:89350125-89350439(-)$1	314	60	65	14.9999
cccnn	chr7:1132490-1132768(-)$1	278	0	5	14.9999
}GGGG	chr7:100730254-100730506(+)$1	252	241	246	14.9999
cccgg	chr8:94752685-94752943(-)$1	258	189	194	14.9999
ccc22	chr9:134351607-134351899(+)$1	292	86	91	14.9999
GGGGG	chr7:1887656-1887908(-)$1	252	11	16	14.9999
d[ddd	chrX:153592597-153592830(-)$1	233	29	34	14.9999
cc]cc	chr19:13264606-13264852(+)$1	246	156	161	14.9999
flllf	chr9:134350659-134350947(+)$1	288	136	141	14.9999
==]ad	chr9:139560096-139560352(+)$1	256	227	232	14.9999
$$$$$	chr16:89346585-89346860(-)$1	275	193	198	14.9999
ee:GG	chr1:245026257-245026508(-)$1	251	225	230	14.9999
eeeeo	chr16:89350264-89350500(-)$1	236	121	126	14.9999
IIIII	chr4:1229669-1229957(-)$1	288	56	61	14.9999
cccnn	chr10:71075446-71075713(+)$1	267	138	143	14.9999
BBB{B	chr8:94752885-94753182(-)$1	297	133	138	14.9999
eeeee	chr16:87735153-87735409(-)$1	256	222	227	14.9999
eee:e	chr22:21801092-21801341(+)$1	249	31	36	14.9999
qccch	chr8:94753045-94753286(-)$1	241	84	89	14.9999
iiiib	chr16:87734510-87734761(-)$1	251	147	152	14.9999
lllff	chr19:55558594-55558900(+)$1	306	90	95	14.9999

#DB
(...)	chr4:759905-760180(-)$1	1	105	110	14.9999
((.((	chr22:50013845-50014161(-)$1	1	91	96	14.9999
)))))	chr7:1132622-1132891(-)$1	1	123	128	14.9999
)))))	chr22:20050697-20050991(+)$1	1	94	99	14.9999
(((((	chr19:2270320-2270598(+)$1	1	198	203	14.9999
...))	chr5:71490576-71490832(+)$1	1	74	79	14.9999
)))((	chr9:134349890-134350156(+)$1	1	153	158	14.9999
(((((	chr7:1131212-1131475(-)$1	1	62	67	14.9999
)))))	chr16:89348127-89348411(-)$1	1	178	183	14.9999
(((((	chr14:105714222-105714487(-)$1	1	132	137	14.9999
))..)	chr16:87736083-87736342(-)$1	1	110	115	14.9999
....(	chr7:1887361-1887627(-)$1	1	33	38	14.9999
)))))	chr1:144931745-144931962(-)$1	1	125	130	14.9999
)))).	chr19:39138284-39138537(+)$1	1	211	216	14.9999
((((.	chr16:89350307-89350602(-)$1	1	223	228	14.9999
(((((	chr7:1887475-1887711(-)$1	1	32	37	14.9999
...))	chr5:71490506-71490752(+)$1	1	144	149	14.9999
((((.	chr16:89350125-89350439(-)$1	1	60	65	14.9999
(((..	chr7:1132490-1132768(-)$1	1	0	5	14.9999
.))))	chr7:100730254-100730506(+)$1	1	241	246	14.9999
)))((	chr8:94752685-94752943(-)$1	1	189	194	14.9999
)))..	chr9:134351607-134351899(+)$1	1	86	91	14.9999
(((((	chr7:1887656-1887908(-)$1	1	11	16	14.9999
(.(((	chrX:153592597-153592830(-)$1	1	29	34	14.9999
)).))	chr19:13264606-13264852(+)$1	1	156	161	14.9999
(...)	chr9:134350659-134350947(+)$1	1	136	141	14.9999
)).))	chr9:139560096-139560352(+)$1	1	227	232	14.9999
.....	chr16:89346585-89346860(-)$1	1	193	198	14.9999
)).))	chr1:245026257-245026508(-)$1	1	225	230	14.9999
((((.	chr16:89350264-89350500(-)$1	1	121	126	14.9999
(((((	chr4:1229669-1229957(-)$1	1	56	61	14.9999
(((..	chr10:71075446-71075713(+)$1	1	138	143	14.9999
(((.(	chr8:94752885-94753182(-)$1	1	133	138	14.9999
)))))	chr16:87735153-87735409(-)$1	1	222	227	14.9999
))).(	chr22:21801092-21801341(+)$1	1	31	36	14.9999
.))))	chr8:94753045-94753286(-)$1	1	84	89	14.9999
(((((	chr16:87734510-87734761(-)$1	1	147	152	14.9999
...))	chr19:55558594-55558900(+)$1	1	90	95	14.9999

#PSSM
C : 0.89	c : 0.10	
U : 0.89	u : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	

#score	569.9999999999999
#seq	38
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_transcript_m1_run1.nuc.txt

#NT
cccuccuccccu	chr10:71921998-71922272(-)$1	274	2	14	21.9523
CCCUCUCUCCCU	chr1:27633884-27634183(+)$1	299	115	127	26.2380
uccucccugccu	chr2:200322906-200323175(-)$1	269	89	101	22.9047
cccucccucccu	chr6:70484695-70484963(-)$1	268	36	48	30.7619
CCCUCCCUCCGA	chr19:6494493-6494816(-)$1	323	215	227	22.6666
cccucccuccuu	chr8:141175490-141175793(-)$1	303	92	104	26.8333
cccucccuccuu	chrX:48651724-48652115(+)$1	391	182	194	26.8333
cccucccucccu	chr6:137090701-137091005(-)$1	304	11	23	30.7619
cccucccucccu	chr1:9869951-9870254(-)$1	303	91	103	30.7619
cccucccucacu	chr10:103249847-103250214(+)$1	367	120	132	26.0000
cccucccacccc	chr7:29923579-29923855(+)$1	276	55	67	23.3809
cucucccucccc	chr19:57742903-57743238(+)$1	335	34	46	23.1428
CCCUCCCAACCU	chr20:401282-401503(+)$1	221	4	16	22.6666
gccucccucccu	chr19:51324026-51324277(-)$1	251	91	103	26.7142
cccucccucccu	chr11:107727698-107727977(-)$1	279	8	20	30.7619
uccucccucccu	chr1:36761079-36761402(+)$1	323	112	124	26.9523
cccucccuccuc	chr17:79222747-79223021(-)$1	274	0	12	23.6190
CCCUCCCUACCU	chr1:155260187-155260437(-)$1	250	197	209	26.8333
cccccccucccc	chr19:11723965-11724213(+)$1	248	3	15	22.7857
cccucccucccu	chr16:88955525-88955817(-)$1	292	29	41	30.7619
cccucccucccu	chrX:79927742-79928014(-)$1	272	91	103	30.7619
cccucccucccu	chr11:4119488-4119825(+)$1	337	17	29	30.7619
cccucccucccu	chr15:50643626-50643953(-)$1	327	67	79	30.7619
cccucccucccu	chr7:127348331-127348656(+)$1	325	75	87	30.7619
cccucccucccu	chr5:131543835-131544056(-)$1	221	0	12	30.7619
ccuucccucccu	chr3:196538204-196538419(+)$1	215	2	14	26.9523
gcuucccucccu	chr10:70262334-70262628(-)$1	294	63	75	22.9047
cccucccucccu	chr3:186702553-186702805(+)$1	252	61	73	30.7619
CCCUCCCUCCAU	chr5:31526543-31526770(-)$1	227	171	183	26.7142
cccuccccaccu	chr20:62153249-62153500(+)$1	251	74	86	22.7857
uccucccccccu	chr17:15980564-15980876(-)$1	312	35	47	22.9047
cucucccuccAU	chrX:149111275-149111546(+)$1	271	120	132	22.3095
UCUUCCCUCCCU	chr9:131090393-131090643(+)$1	250	209	221	23.1428
cccucccucccu	chr7:6429643-6429925(+)$1	282	53	65	30.7619
CACUCCCUGCCU	chr1:29214849-29215178(+)$1	329	192	204	22.1904
cccucccucccu	chr8:129015455-129015765(+)$1	310	3	15	30.7619
cccucccuuccu	chr15:41323802-41324092(-)$1	290	240	252	26.5952
cccucccucccu	chr7:129719677-129719948(+)$1	271	38	50	30.7619
cccucccucccu	chr19:48147643-48147924(+)$1	281	39	51	30.7619
ccuucccucccc	chr11:66010846-66011124(+)$1	278	62	74	23.7380
CCCUCUCUCCCC	chr19:42401298-42401559(+)$1	261	151	163	23.0238

#otherMatches

#Struct PSSM
SSSSSSCCC{DD	chr6:44009885-44010202(-)$1	317	26	38	23.7380
::::::::::::	chr10:71921998-71922272(-)$1	274	2	14	21.9523
2ccc::::::::	chr1:27633884-27634183(+)$1	299	115	127	26.2380
::::::::::::	chr2:200322906-200323175(-)$1	269	89	101	22.9047
::::::::::::	chr6:70484695-70484963(-)$1	268	36	48	30.7619
qqqqqqqcccCC	chr19:6494493-6494816(-)$1	323	215	227	22.6666
::::::::::::	chr8:141175490-141175793(-)$1	303	92	104	26.8333
::::::::::::	chrX:48651724-48652115(+)$1	391	182	194	26.8333
::::::::::::	chr6:137090701-137091005(-)$1	304	11	23	30.7619
::::::::::::	chr1:9869951-9870254(-)$1	303	91	103	30.7619
{DDDDWWWWWWW	chr10:103249847-103250214(+)$1	367	120	132	26.0000
::::::::::::	chr7:29923579-29923855(+)$1	276	55	67	23.3809
::::::::::::	chr19:57742903-57743238(+)$1	335	34	46	23.1428
::::::::::::	chr20:401282-401503(+)$1	221	4	16	22.6666
dd::::::::::	chr19:51324026-51324277(-)$1	251	91	103	26.7142
::::::::::::	chr11:107727698-107727977(-)$1	279	8	20	30.7619
^^^^^^^^^^^^	chr1:36761079-36761402(+)$1	323	112	124	26.9523
::::::::::::	chr17:79222747-79223021(-)$1	274	0	12	23.6190
)ddddppppppp	chr1:155260187-155260437(-)$1	250	197	209	26.8333
::::::::::::	chr19:11723965-11724213(+)$1	248	3	15	22.7857
b::::::::::E	chr16:88955525-88955817(-)$1	292	29	41	30.7619
::::::::::::	chrX:79927742-79928014(-)$1	272	91	103	30.7619
::::::::::::	chr11:4119488-4119825(+)$1	337	17	29	30.7619
::::::::::::	chr15:50643626-50643953(-)$1	327	67	79	30.7619
::::::::::::	chr7:127348331-127348656(+)$1	325	75	87	30.7619
::::::::::::	chr5:131543835-131544056(-)$1	221	0	12	30.7619
::::::::::::	chr3:196538204-196538419(+)$1	215	2	14	26.9523
::::::::::::	chr10:70262334-70262628(-)$1	294	63	75	22.9047
::::::::::::	chr3:186702553-186702805(+)$1	252	61	73	30.7619
:::::::::::I	chr5:31526543-31526770(-)$1	227	171	183	26.7142
::::::::::::	chr20:62153249-62153500(+)$1	251	74	86	22.7857
::::::::::::	chr17:15980564-15980876(-)$1	312	35	47	22.9047
^^^^^^^^^^^^	chrX:149111275-149111546(+)$1	271	120	132	22.3095
__HHHHHHHHZZ	chr9:131090393-131090643(+)$1	250	209	221	23.1428
cccc&&&&&&&d	chr7:6429643-6429925(+)$1	282	53	65	30.7619
mmmdddd:dddd	chr1:29214849-29215178(+)$1	329	192	204	22.1904
::::::::::::	chr8:129015455-129015765(+)$1	310	3	15	30.7619
::::::::::::	chr15:41323802-41324092(-)$1	290	240	252	26.5952
::::::::::::	chr7:129719677-129719948(+)$1	271	38	50	30.7619
CCC:::::::::	chr19:48147643-48147924(+)$1	281	39	51	30.7619
EEEE::::::::	chr11:66010846-66011124(+)$1	278	62	74	23.7380
==bb333hhhhh	chr19:42401298-42401559(+)$1	261	151	163	23.0238

#DB
......(((.((	chr6:44009885-44010202(-)$1	1	26	38	23.7380
............	chr10:71921998-71922272(-)$1	1	2	14	21.9523
.)))........	chr1:27633884-27634183(+)$1	1	115	127	26.2380
............	chr2:200322906-200323175(-)$1	1	89	101	22.9047
............	chr6:70484695-70484963(-)$1	1	36	48	30.7619
.......)))))	chr19:6494493-6494816(-)$1	1	215	227	22.6666
............	chr8:141175490-141175793(-)$1	1	92	104	26.8333
............	chrX:48651724-48652115(+)$1	1	182	194	26.8333
............	chr6:137090701-137091005(-)$1	1	11	23	30.7619
............	chr1:9869951-9870254(-)$1	1	91	103	30.7619
.((((.......	chr10:103249847-103250214(+)$1	1	120	132	26.0000
............	chr7:29923579-29923855(+)$1	1	55	67	23.3809
............	chr19:57742903-57743238(+)$1	1	34	46	23.1428
............	chr20:401282-401503(+)$1	1	4	16	22.6666
))..........	chr19:51324026-51324277(-)$1	1	91	103	26.7142
............	chr11:107727698-107727977(-)$1	1	8	20	30.7619
............	chr1:36761079-36761402(+)$1	1	112	124	26.9523
............	chr17:79222747-79223021(-)$1	1	0	12	23.6190
.((((.......	chr1:155260187-155260437(-)$1	1	197	209	26.8333
............	chr19:11723965-11724213(+)$1	1	3	15	22.7857
)..........(	chr16:88955525-88955817(-)$1	1	29	41	30.7619
............	chrX:79927742-79928014(-)$1	1	91	103	30.7619
............	chr11:4119488-4119825(+)$1	1	17	29	30.7619
............	chr15:50643626-50643953(-)$1	1	67	79	30.7619
............	chr7:127348331-127348656(+)$1	1	75	87	30.7619
............	chr5:131543835-131544056(-)$1	1	0	12	30.7619
............	chr3:196538204-196538419(+)$1	1	2	14	26.9523
............	chr10:70262334-70262628(-)$1	1	63	75	22.9047
............	chr3:186702553-186702805(+)$1	1	61	73	30.7619
...........)	chr5:31526543-31526770(-)$1	1	171	183	26.7142
............	chr20:62153249-62153500(+)$1	1	74	86	22.7857
............	chr17:15980564-15980876(-)$1	1	35	47	22.9047
............	chrX:149111275-149111546(+)$1	1	120	132	22.3095
..))))))))..	chr9:131090393-131090643(+)$1	1	209	221	23.1428
((((.......(	chr7:6429643-6429925(+)$1	1	53	65	30.7619
...)))).((((	chr1:29214849-29215178(+)$1	1	192	204	22.1904
............	chr8:129015455-129015765(+)$1	1	3	15	30.7619
............	chr15:41323802-41324092(-)$1	1	240	252	26.5952
............	chr7:129719677-129719948(+)$1	1	38	50	30.7619
(((.........	chr19:48147643-48147924(+)$1	1	39	51	30.7619
((((........	chr11:66010846-66011124(+)$1	1	62	74	23.7380
))))...)))))	chr19:42401298-42401559(+)$1	1	151	163	23.0238

#PSSM
c : 0.69	C : 0.16	u : 0.07	g : 0.04	U : 0.02	
c : 0.76	C : 0.16	u : 0.04	A : 0.02	
c : 0.71	C : 0.16	u : 0.09	U : 0.02	
u : 0.78	U : 0.19	c : 0.02	
c : 0.80	C : 0.19	
c : 0.80	C : 0.14	U : 0.04	
c : 0.78	C : 0.19	u : 0.02	
u : 0.71	U : 0.16	c : 0.07	a : 0.02	A : 0.02	
c : 0.73	C : 0.11	A : 0.04	g : 0.02	a : 0.02	G : 0.02	u : 0.02	
c : 0.78	C : 0.19	a : 0.02	
c : 0.71	C : 0.14	u : 0.07	A : 0.04	G : 0.02	
u : 0.64	U : 0.16	c : 0.14	A : 0.02	C : 0.02	

#score	1117.952380952382
#seq	42
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF470JIH_PUS1_transcript_m2_run2.nuc.txt

#NT
UAUCCCCCAUUCUCCUCCUAUCCCUCAACCCCGACAUCAUUACCGGGUUUUCCUCUUGUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUUACGACCCCUUAUUUACCGAGAAAGCUCACAAGAACUGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCUC	chrM:12077-12280(+)$1	203	4	188	552.0000
UAUCCCCCAUUCUCCUCCUAUCCCUCAACCCCGACAUCAUUACCGGGUUUUCCUCUUGUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUUACGACCCCUUAUUUACCGAGAAAGCUCACAAGAACUGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCUC	chrM:12072-12277(+)$1	205	9	193	552.0000
UAUCCCCCAUUCUCCUCCUAUCCCUCAACCCCGACAUCAUUACCGGGUUUUCCUCUUGUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUUACGACCCCUUAUUUACCGAGAAAGCUCACAAGAACUGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCUC	chrM:12065-12272(+)$1	207	16	200	552.0000
UAUCCCCCAUUCUCCUCCUAUCCCUCAACCCCGACAUCAUUACCGGGUUUUCCUCUUGUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUUACGACCCCUUAUUUACCGAGAAAGCUCACAAGAACUGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCUC	chrM:12059-12265(+)$1	206	22	206	552.0000

#otherMatches

#Struct PSSM
::::::::::::::::::EEEEE:::::::::::::::::::::EEEEEKKEEEEE{BB:::::::ddddnnnnndddd:ggggggglllggggggg::BBEEEEE?????EEEEE::::::::::HHHHHHHH:::::::::::bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHHH	chrM:12080-12284(+)$1	204	1	185	552.0000
::::::::::::::::::EEEEE:::::::::::::::::::::EEEEEKKEEEEE{BB:::::::ddddnnnnndddd:ggggggglllggggggg::BBEEEEE?????EEEEE::::::::::HHHHHHHH:::::::::::bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHHH	chrM:12077-12280(+)$1	203	4	188	552.0000
:::::::::::::::BB{BBKKDDDD:::ddddssssssssssdddd:::::::::::::::::::ddddnnnnndddd:ggggggglllggggggg:::::DDDDYYBB}BB::DDDDPPPPPPPHHHHHHHH:::::::::::bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHHH	chrM:12072-12277(+)$1	205	9	193	552.0000
::::::::::::::::::::::::::::::::::::::::::::EEEEEKKEEEEE{BB:::::::ddddnnnnndddd:ggggggglllggggggg::BBEEEEE?????EEEEE::::::::::HHHHHHHH:::::::::::bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHHH	chrM:12065-12272(+)$1	207	16	200	552.0000
:::::::::::::::::::::::::::::ddddssssssssssdddd:::::::::::::::::::ddddnnnnndddd:ggggggglllggggggg:DDDDDDDD::::::::::::::::::::HHHHHHHH:::::::::::bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHHH	chrM:12059-12265(+)$1	206	22	206	552.0000

#DB
..................(((((.....................(((((..(((((.((.......((((.....)))).(((((((...)))))))..))))))).....)))))..........((((((((...........((........))...(((((......)))))))))))))	chrM:12080-12284(+)$1	1	1	185	552.0000
..................(((((.....................(((((..(((((.((.......((((.....)))).(((((((...)))))))..))))))).....)))))..........((((((((...........((........))...(((((......)))))))))))))	chrM:12077-12280(+)$1	1	4	188	552.0000
...............((.((..((((...((((..........))))...................((((.....)))).(((((((...))))))).....))))..)).))..((((.......((((((((...........((........))...(((((......)))))))))))))	chrM:12072-12277(+)$1	1	9	193	552.0000
............................................(((((..(((((.((.......((((.....)))).(((((((...)))))))..))))))).....)))))..........((((((((...........((........))...(((((......)))))))))))))	chrM:12065-12272(+)$1	1	16	200	552.0000
.............................((((..........))))...................((((.....)))).(((((((...))))))).))))))))....................((((((((...........((........))...(((((......)))))))))))))	chrM:12059-12265(+)$1	1	22	206	552.0000

#PSSM
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	

#score	2760.0
#seq	5
#width	184
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_transcript_m1_run2.nuc.txt

#NT
GGUUGGG	chr17:79655861-79656140(+)$1	279	11	18	14.1818
gguggag	chr10:35759085-35759424(+)$1	339	118	125	14.2727
GGUGGGG	chr8:41576945-41577218(-)$1	273	191	198	17.8181
GGUGGGG	chr1:52249661-52249988(+)$1	327	149	156	17.8181
GGUGGAG	chr3:9960041-9960322(+)$1	281	32	39	14.2727
GCUGGGG	chr16:722325-722597(+)$1	272	247	254	14.6363
GUUGGGG	chr19:42796949-42797220(+)$1	271	93	100	14.1818
GAUGGGG	chr11:62393285-62393548(-)$1	263	36	43	14.0000
GGUGGGG	chr19:10227565-10227821(-)$1	256	78	85	17.8181
GGUCGGG	chr19:55918692-55918951(-)$1	259	27	34	14.0000
GCUGGGG	chr1:1247765-1248045(-)$1	280	41	48	14.6363
GGUGGGG	chr4:1348044-1348350(+)$1	306	84	91	17.8181
GGUAGGG	chr15:91423959-91424269(+)$1	310	105	112	13.9090
GGUGGUG	chr17:80054309-80054567(-)$1	258	134	141	14.0909
GGUGGGG	chr1:1256070-1256390(-)$1	320	186	193	17.8181
GGUGGGG	chr6:42986433-42986695(+)$1	262	109	116	17.8181
GGUGGGG	chr6:30888843-30889135(+)$1	292	189	196	17.8181
GGUGGGG	chr6:33419313-33419594(+)$1	281	79	86	17.8181
GGUGGGG	chr19:2805893-2806162(+)$1	269	95	102	17.8181
GGUUGGG	chr12:133147071-133147320(+)$1	249	90	97	14.1818
GGUGUGG	chr1:982278-982592(+)$1	314	232	239	13.3636
GCUGGGG	chr22:21797634-21797925(+)$1	291	66	73	14.6363
GGUGGAG	chr11:72408421-72408674(-)$1	253	17	24	14.2727
GGUGGAG	chr11:66367835-66368154(+)$1	319	285	292	14.2727
GGUGGGG	chr11:61643371-61643630(-)$1	259	77	84	17.8181
GGUCGGG	chr19:16187719-16187997(+)$1	278	14	21	14.0000
GUUGGGG	chr4:103730687-103731008(-)$1	321	47	54	14.1818
GGUAGGG	chr3:135979342-135979628(+)$1	286	133	140	13.9090
GGUGUGG	chr3:39143908-39144230(-)$1	322	46	53	13.3636
GGUGGGG	chr9:123628271-123628538(-)$1	267	75	82	17.8181
GUUGGGG	chr12:56120677-56120941(-)$1	264	11	18	14.1818
GGUCGGG	chr1:985381-985698(+)$1	317	35	42	14.0000
GGUGGAG	chr2:113993086-113993457(+)$1	371	11	18	14.2727
GCUGGGG	chr2:27246369-27246615(+)$1	246	60	67	14.6363
GGUGGGG	chr17:47117159-47117452(+)$1	293	93	100	17.8181
GGUGGUG	chr19:6418305-6418567(-)$1	262	89	96	14.0909
GGUGGGG	chr19:2233802-2234059(-)$1	257	89	96	17.8181
GGUGGGG	chr16:28834845-28835110(+)$1	265	95	102	17.8181
GCUGGGG	chr1:22176553-22176836(-)$1	283	6	13	14.6363
GGUGGGG	chr9:86594443-86594695(-)$1	252	87	94	17.8181
GCUGGGG	chr6:42851250-42851674(+)$1	424	134	141	14.6363
GGUGGGG	chr22:38901739-38902011(-)$1	272	61	68	17.8181
GGUUGGG	chr17:61902207-61902455(-)$1	248	96	103	14.1818
GGUGUGG	chr12:104335291-104335542(+)$1	251	187	194	13.3636
GCUGGGG	chr1:228328800-228329028(+)$1	228	137	144	14.6363
GGUUGGG	chr7:54826641-54826896(-)$1	255	36	43	14.1818
GGUGGGG	chr19:18543636-18543897(+)$1	261	73	80	17.8181
GGUUGGG	chr11:64673918-64674189(-)$1	271	90	97	14.1818
GGUGGGG	chr1:150522735-150523007(+)$1	272	89	96	17.8181
GGUGGAG	chr19:59063217-59063496(-)$1	279	97	104	14.2727
GGUGGGG	chr16:30077420-30077703(+)$1	283	144	151	17.8181
ggugggg	chr22:50942748-50943048(-)$1	300	107	114	17.8181
gguggug	chr9:125758876-125759267(+)$1	391	217	224	14.0909
GCUGGGG	chr22:23615876-23616108(+)$1	232	128	135	14.6363

#otherMatches

#Struct PSSM
KKCCC{B	chr16:88782586-88782843(-)$1	257	91	98	14.0909
LLGGGGG	chr17:79655861-79656140(+)$1	279	11	18	14.1818
HHHHH::	chr10:35759085-35759424(+)$1	339	118	125	14.2727
5bb22ff	chr8:41576945-41577218(-)$1	273	191	198	17.8181
MGGGGGG	chr1:52249661-52249988(+)$1	327	149	156	17.8181
gggbb[b	chr3:9960041-9960322(+)$1	281	32	39	14.2727
FFFFF}D	chr16:722325-722597(+)$1	272	247	254	14.6363
eeeee22	chr19:42796949-42797220(+)$1	271	93	100	14.1818
ooocccG	chr11:62393285-62393548(-)$1	263	36	43	14.0000
FFFF{CC	chr19:10227565-10227821(-)$1	256	78	85	17.8181
FFFKKII	chr19:55918692-55918951(-)$1	259	27	34	14.0000
[a####c	chr1:1247765-1248045(-)$1	280	41	48	14.6363
6bb]a]d	chr4:1348044-1348350(+)$1	306	84	91	17.8181
dd!!fff	chr15:91423959-91424269(+)$1	310	105	112	13.9090
ddd]ddd	chr17:80054309-80054567(-)$1	258	134	141	14.0909
ddd]fff	chr1:1256070-1256390(-)$1	320	186	193	17.8181
eee::::	chr6:42986433-42986695(+)$1	262	109	116	17.8181
cc]eeee	chr6:30888843-30889135(+)$1	292	189	196	17.8181
DDDD{EE	chr6:33419313-33419594(+)$1	281	79	86	17.8181
ffffff]	chr19:2805893-2806162(+)$1	269	95	102	17.8181
gggggGG	chr12:133147071-133147320(+)$1	249	90	97	14.1818
ccc22cc	chr1:982278-982592(+)$1	314	232	239	13.3636
ee]hhhh	chr22:21797634-21797925(+)$1	291	66	73	14.6363
JJJJJ{B	chr11:72408421-72408674(-)$1	253	17	24	14.2727
CCC}A}B	chr11:66367835-66368154(+)$1	319	285	292	14.2727
iiiiiii	chr11:61643371-61643630(-)$1	259	77	84	17.8181
b[eeeee	chr19:16187719-16187997(+)$1	278	14	21	14.0000
gggggg[	chr4:103730687-103731008(-)$1	321	47	54	14.1818
ee]ffff	chr3:135979342-135979628(+)$1	286	133	140	13.9090
[bblllb	chr3:39143908-39144230(-)$1	322	46	53	13.3636
EEEEECC	chr9:123628271-123628538(-)$1	267	75	82	17.8181
DDDD{BB	chr12:56120677-56120941(-)$1	264	11	18	14.1818
]cccfff	chr1:985381-985698(+)$1	317	35	42	14.0000
DDD{A:d	chr2:113993086-113993457(+)$1	371	11	18	14.2727
f]ddddE	chr2:27246369-27246615(+)$1	246	60	67	14.6363
GGGGG::	chr17:47117159-47117452(+)$1	293	93	100	17.8181
sssssss	chr19:6418305-6418567(-)$1	262	89	96	14.0909
===hhhh	chr19:2233802-2234059(-)$1	257	89	96	17.8181
JJJJJbb	chr16:28834845-28835110(+)$1	265	95	102	17.8181
HHHHHHH	chr1:22176553-22176836(-)$1	283	6	13	14.6363
hhhhhhh	chr9:86594443-86594695(-)$1	252	87	94	17.8181
h:::fff	chr6:42851250-42851674(+)$1	424	134	141	14.6363
ccc]a]a	chr22:38901739-38902011(-)$1	272	61	68	17.8181
=======	chr17:61902207-61902455(-)$1	248	96	103	14.1818
eeeeppp	chr12:104335291-104335542(+)$1	251	187	194	13.3636
[allla]	chr1:228328800-228329028(+)$1	228	137	144	14.6363
ddd[ccc	chr7:54826641-54826896(-)$1	255	36	43	14.1818
GGGGGGG	chr19:18543636-18543897(+)$1	261	73	80	17.8181
a]bb]bb	chr11:64673918-64674189(-)$1	271	90	97	14.1818
ddd[ddd	chr1:150522735-150523007(+)$1	272	89	96	17.8181
ggggggm	chr19:59063217-59063496(-)$1	279	97	104	14.2727
c[cccll	chr16:30077420-30077703(+)$1	283	144	151	17.8181
ffffbb"	chr22:50942748-50943048(-)$1	300	107	114	17.8181
FFFFF}F	chr9:125758876-125759267(+)$1	391	217	224	14.0909
iiiiiii	chr22:23615876-23616108(+)$1	232	128	135	14.6363

#DB
..(((.(	chr16:88782586-88782843(-)$1	1	91	98	14.0909
..(((((	chr17:79655861-79656140(+)$1	1	11	18	14.1818
(((((..	chr10:35759085-35759424(+)$1	1	118	125	14.2727
.))..))	chr8:41576945-41577218(-)$1	1	191	198	17.8181
.((((((	chr1:52249661-52249988(+)$1	1	149	156	17.8181
(((((.(	chr3:9960041-9960322(+)$1	1	32	39	14.2727
))))).)	chr16:722325-722597(+)$1	1	247	254	14.6363
)))))..	chr19:42796949-42797220(+)$1	1	93	100	14.1818
...)))(	chr11:62393285-62393548(-)$1	1	36	43	14.0000
((((.((	chr19:10227565-10227821(-)$1	1	78	85	17.8181
(((..((	chr19:55918692-55918951(-)$1	1	27	34	14.0000
.(....(	chr1:1247765-1248045(-)$1	1	41	48	14.6363
.)).).)	chr4:1348044-1348350(+)$1	1	84	91	17.8181
((..(((	chr15:91423959-91424269(+)$1	1	105	112	13.9090
))).)))	chr17:80054309-80054567(-)$1	1	134	141	14.0909
))).)))	chr1:1256070-1256390(-)$1	1	186	193	17.8181
)))....	chr6:42986433-42986695(+)$1	1	109	116	17.8181
)).))))	chr6:30888843-30889135(+)$1	1	189	196	17.8181
((((.((	chr6:33419313-33419594(+)$1	1	79	86	17.8181
)))))).	chr19:2805893-2806162(+)$1	1	95	102	17.8181
)))))))	chr12:133147071-133147320(+)$1	1	90	97	14.1818
)))..))	chr1:982278-982592(+)$1	1	232	239	13.3636
)).))))	chr22:21797634-21797925(+)$1	1	66	73	14.6363
(((((.(	chr11:72408421-72408674(-)$1	1	17	24	14.2727
))).).)	chr11:66367835-66368154(+)$1	1	285	292	14.2727
(((((((	chr11:61643371-61643630(-)$1	1	77	84	17.8181
(.(((((	chr19:16187719-16187997(+)$1	1	14	21	14.0000
((((((.	chr4:103730687-103731008(-)$1	1	47	54	14.1818
)).))))	chr3:135979342-135979628(+)$1	1	133	140	13.9090
.((...)	chr3:39143908-39144230(-)$1	1	46	53	13.3636
(((((((	chr9:123628271-123628538(-)$1	1	75	82	17.8181
((((.((	chr12:56120677-56120941(-)$1	1	11	18	14.1818
.))))))	chr1:985381-985698(+)$1	1	35	42	14.0000
(((.(.(	chr2:113993086-113993457(+)$1	1	11	18	14.2727
).))))(	chr2:27246369-27246615(+)$1	1	60	67	14.6363
(((((..	chr17:47117159-47117452(+)$1	1	93	100	17.8181
.......	chr19:6418305-6418567(-)$1	1	89	96	14.0909
(((((((	chr19:2233802-2234059(-)$1	1	89	96	17.8181
(((((((	chr16:28834845-28835110(+)$1	1	95	102	17.8181
(((((((	chr1:22176553-22176836(-)$1	1	6	13	14.6363
(((((((	chr9:86594443-86594695(-)$1	1	87	94	17.8181
)...(((	chr6:42851250-42851674(+)$1	1	134	141	14.6363
))).).)	chr22:38901739-38902011(-)$1	1	61	68	17.8181
(((((((	chr17:61902207-61902455(-)$1	1	96	103	14.1818
((((...	chr12:104335291-104335542(+)$1	1	187	194	13.3636
.(...).	chr1:228328800-228329028(+)$1	1	137	144	14.6363
(((.(((	chr7:54826641-54826896(-)$1	1	36	43	14.1818
(((((((	chr19:18543636-18543897(+)$1	1	73	80	17.8181
).)).))	chr11:64673918-64674189(-)$1	1	90	97	14.1818
(((.(((	chr1:150522735-150523007(+)$1	1	89	96	17.8181
((((((.	chr19:59063217-59063496(-)$1	1	97	104	14.2727
(.(((..	chr16:30077420-30077703(+)$1	1	144	151	17.8181
((((((.	chr22:50942748-50943048(-)$1	1	107	114	17.8181
))))).)	chr9:125758876-125759267(+)$1	1	217	224	14.0909
(((((((	chr22:23615876-23616108(+)$1	1	128	135	14.6363

#PSSM
G : 0.94	g : 0.05	
G : 0.72	C : 0.14	g : 0.05	U : 0.05	A : 0.01	
U : 0.94	u : 0.05	
G : 0.76	U : 0.09	g : 0.05	C : 0.05	A : 0.03	
G : 0.89	g : 0.05	U : 0.05	
G : 0.80	A : 0.09	U : 0.05	a : 0.01	g : 0.01	u : 0.01	
G : 0.94	g : 0.05	

#score	852.8181818181822
#seq	55
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_CDS_m3_run1.nuc.txt

#NT
CCUGG	chr16:29817938-29818176(+)$1	238	137	142	14.9999
CCUGG	chr1:244816516-244816760(+)$1	244	153	158	14.9999
CCUGG	chr19:50321455-50321752(+)$1	297	223	228	14.9999
CCUGG	chr6:44081825-44082035(-)$1	210	152	157	14.9999
CCUGG	chr7:102715616-102715879(+)$1	263	67	72	14.9999
CCUGG	chr15:40331026-40331249(-)$1	223	205	210	14.9999
CCUGG	chr1:67895824-67896075(-)$1	251	95	100	14.9999
CCUGG	chr3:141595490-141595798(+)$1	308	188	193	14.9999
CCUGG	chrX:19361967-19362261(+)$1	294	7	12	14.9999
CCUGG	chr9:132586129-132586485(-)$1	356	195	200	14.9999
CCUGG	chr19:13049399-13049620(+)$1	221	132	137	14.9999
CCUGG	chr2:113343485-113343758(+)$1	273	31	36	14.9999
CCUgg	chr2:132249779-132250019(-)$1	240	91	96	14.9999
CCUGG	chr7:130353384-130353664(-)$1	280	111	116	14.9999
CCUGG	chr15:63340578-63340960(+)$1	382	19	24	14.9999
CCUGG	chr9:37422597-37422872(+)$1	275	72	77	14.9999
CCUGG	chr12:64173581-64173893(+)$1	312	59	64	14.9999
CCUGG	chr18:66382070-66382416(-)$1	346	287	292	14.9999
CCUGG	chr5:150158260-150158612(+)$1	352	81	86	14.9999
CCUGG	chr19:5622494-5622757(-)$1	263	67	72	14.9999
CCUGG	chr18:9102626-9102842(+)$1	216	24	29	14.9999
CCUGG	chr1:2125395-2125654(-)$1	259	99	104	14.9999
CCUGG	chr1:55181435-55181724(+)$1	289	155	160	14.9999
CCUGG	chr11:118965866-118966155(-)$1	289	203	208	14.9999
CCUGG	chr1:44440676-44440879(+)$1	203	115	120	14.9999
CCUGG	chr7:96746922-96747295(+)$1	373	199	204	14.9999
ccugg	chr4:1857564-1857897(-)$1	333	2	7	14.9999
ccugg	chr22:19949949-19950178(+)$1	229	144	149	14.9999
CCUGG	chr8:53626533-53626773(-)$1	240	200	205	14.9999
CCUGG	chr6:30312843-30313090(+)$1	247	88	93	14.9999
CCUGG	chr16:1832867-1833144(+)$1	277	139	144	14.9999
CCUGG	chr11:65655464-65655704(-)$1	240	4	9	14.9999
CCUGG	chr1:52344121-52344449(-)$1	328	122	127	14.9999
CCUGG	chr2:75185794-75186064(+)$1	270	111	116	14.9999
CCUGG	chr13:76123838-76124099(+)$1	261	181	186	14.9999
CCUGG	chr11:6624624-6624925(-)$1	301	22	27	14.9999
CCUGG	chr6:96969614-96969874(+)$1	260	145	150	14.9999
CCUGG	chr9:131418781-131419063(-)$1	282	183	188	14.9999
CCUGG	chr3:49059500-49059722(+)$1	222	150	155	14.9999
CCUGG	chr15:38746252-38746536(+)$1	284	231	236	14.9999
CCUGG	chr11:64019034-64019301(+)$1	267	75	80	14.9999
CCUGG	chr15:59225575-59225883(-)$1	308	44	49	14.9999
CCUGG	chr2:231280811-231281150(+)$1	339	112	117	14.9999
CCUGG	chr1:8022748-8023013(+)$1	265	123	128	14.9999
CCUGG	chr14:101194631-101194867(+)$1	236	55	60	14.9999
CCUGG	chr7:99747087-99747303(+)$1	216	84	89	14.9999
CCUGG	chr11:71810188-71810404(-)$1	216	67	72	14.9999
CCUGG	chr6:143832646-143832903(-)$1	257	241	246	14.9999
CCUGG	chr1:1509782-1510063(-)$1	281	275	280	14.9999
CCUGG	chr9:127962949-127963242(+)$1	293	40	45	14.9999
CCUGG	chr11:47447651-47447906(-)$1	255	43	48	14.9999
CCUGG	chr17:80709879-80710200(+)$1	321	117	122	14.9999
CCUGG	chr20:57617660-57617904(-)$1	244	81	86	14.9999
CCUGG	chr22:21984119-21984334(-)$1	215	51	56	14.9999
CCUGG	chr8:55047730-55048051(+)$1	321	148	153	14.9999
CCUGG	chr12:57039557-57039796(-)$1	239	172	177	14.9999
CCUGG	chr8:103250940-103251270(-)$1	330	90	95	14.9999
CCUGG	chr20:56099068-56099343(-)$1	275	261	266	14.9999
CCUGG	chr19:35739894-35740135(+)$1	241	128	133	14.9999
CCUGG	chr1:223900198-223900506(+)$1	308	66	71	14.9999
CCUGG	chr11:236884-237194(+)$1	310	281	286	14.9999
CCUGG	chr11:71810096-71810388(-)$1	292	51	56	14.9999
CCUGG	chr7:1608752-1609003(-)$1	251	123	128	14.9999
CCUGG	chr11:62556394-62556611(+)$1	217	156	161	14.9999
CCUGG	chr6:43603500-43603759(+)$1	259	154	159	14.9999

#otherMatches

#Struct PSSM
FFFFF	chr17:48227632-48227930(-)$1	298	292	297	14.9999
HHHHH	chr16:29817938-29818176(+)$1	238	137	142	14.9999
2dddd	chr1:244816516-244816760(+)$1	244	153	158	14.9999
nccc2	chr19:50321455-50321752(+)$1	297	223	228	14.9999
!!fff	chr6:44081825-44082035(-)$1	210	152	157	14.9999
dd!!b	chr7:102715616-102715879(+)$1	263	67	72	14.9999
ggg44	chr15:40331026-40331249(-)$1	223	205	210	14.9999
ddddq	chr1:67895824-67896075(-)$1	251	95	100	14.9999
ldddd	chr3:141595490-141595798(+)$1	308	188	193	14.9999
{BB{A	chrX:19361967-19362261(+)$1	294	7	12	14.9999
FFFFF	chr9:132586129-132586485(-)$1	356	195	200	14.9999
dllld	chr19:13049399-13049620(+)$1	221	132	137	14.9999
F::cc	chr2:113343485-113343758(+)$1	273	31	36	14.9999
dddd]	chr2:132249779-132250019(-)$1	240	91	96	14.9999
22eee	chr7:130353384-130353664(-)$1	280	111	116	14.9999
DDDD{	chr15:63340578-63340960(+)$1	382	19	24	14.9999
C{FFF	chr9:37422597-37422872(+)$1	275	72	77	14.9999
eeeem	chr12:64173581-64173893(+)$1	312	59	64	14.9999
cccdd	chr18:66382070-66382416(-)$1	346	287	292	14.9999
fffff	chr5:150158260-150158612(+)$1	352	81	86	14.9999
IIIIB	chr19:5622494-5622757(-)$1	263	67	72	14.9999
JJJJJ	chr18:9102626-9102842(+)$1	216	24	29	14.9999
ggggg	chr1:2125395-2125654(-)$1	259	99	104	14.9999
bb22c	chr1:55181435-55181724(+)$1	289	155	160	14.9999
nffff	chr11:118965866-118966155(-)$1	289	203	208	14.9999
4444f	chr1:44440676-44440879(+)$1	203	115	120	14.9999
fffff	chr7:96746922-96747295(+)$1	373	199	204	14.9999
=====	chr4:1857564-1857897(-)$1	333	2	7	14.9999
fffdd	chr22:19949949-19950178(+)$1	229	144	149	14.9999
iiiii	chr8:53626533-53626773(-)$1	240	200	205	14.9999
gggg"	chr6:30312843-30313090(+)$1	247	88	93	14.9999
:IIII	chr16:1832867-1833144(+)$1	277	139	144	14.9999
dd[a[	chr11:65655464-65655704(-)$1	240	4	9	14.9999
hhhhh	chr1:52344121-52344449(-)$1	328	122	127	14.9999
=====	chr2:75185794-75186064(+)$1	270	111	116	14.9999
bccc[	chr13:76123838-76124099(+)$1	261	181	186	14.9999
DDDD{	chr11:6624624-6624925(-)$1	301	22	27	14.9999
55eee	chr6:96969614-96969874(+)$1	260	145	150	14.9999
ggggg	chr9:131418781-131419063(-)$1	282	183	188	14.9999
EEEEY	chr3:49059500-49059722(+)$1	222	150	155	14.9999
CCC==	chr15:38746252-38746536(+)$1	284	231	236	14.9999
ggggg	chr11:64019034-64019301(+)$1	267	75	80	14.9999
qqqqe	chr15:59225575-59225883(-)$1	308	44	49	14.9999
!!ccc	chr2:231280811-231281150(+)$1	339	112	117	14.9999
lleee	chr1:8022748-8023013(+)$1	265	123	128	14.9999
ggggg	chr14:101194631-101194867(+)$1	236	55	60	14.9999
eeeee	chr7:99747087-99747303(+)$1	216	84	89	14.9999
ggggE	chr11:71810188-71810404(-)$1	216	67	72	14.9999
mmmcc	chr6:143832646-143832903(-)$1	257	241	246	14.9999
:DDDD	chr1:1509782-1510063(-)$1	281	275	280	14.9999
ooocc	chr9:127962949-127963242(+)$1	293	40	45	14.9999
ggggg	chr11:47447651-47447906(-)$1	255	43	48	14.9999
ee!!d	chr17:80709879-80710200(+)$1	321	117	122	14.9999
::::d	chr20:57617660-57617904(-)$1	244	81	86	14.9999
cc[cc	chr22:21984119-21984334(-)$1	215	51	56	14.9999
=====	chr8:55047730-55048051(+)$1	321	148	153	14.9999
555ff	chr12:57039557-57039796(-)$1	239	172	177	14.9999
2ffff	chr8:103250940-103251270(-)$1	330	90	95	14.9999
=====	chr20:56099068-56099343(-)$1	275	261	266	14.9999
ccc[d	chr19:35739894-35740135(+)$1	241	128	133	14.9999
MMHHH	chr1:223900198-223900506(+)$1	308	66	71	14.9999
ZZIII	chr11:236884-237194(+)$1	310	281	286	14.9999
MMMME	chr11:71810096-71810388(-)$1	292	51	56	14.9999
fbb]a	chr7:1608752-1609003(-)$1	251	123	128	14.9999
88eee	chr11:62556394-62556611(+)$1	217	156	161	14.9999
ggggg	chr6:43603500-43603759(+)$1	259	154	159	14.9999

#DB
)))))	chr17:48227632-48227930(-)$1	1	292	297	14.9999
)))))	chr16:29817938-29818176(+)$1	1	137	142	14.9999
.))))	chr1:244816516-244816760(+)$1	1	153	158	14.9999
.))).	chr19:50321455-50321752(+)$1	1	223	228	14.9999
..(((	chr6:44081825-44082035(-)$1	1	152	157	14.9999
((..(	chr7:102715616-102715879(+)$1	1	67	72	14.9999
)))..	chr15:40331026-40331249(-)$1	1	205	210	14.9999
((((.	chr1:67895824-67896075(-)$1	1	95	100	14.9999
.))))	chr3:141595490-141595798(+)$1	1	188	193	14.9999
.((.(	chrX:19361967-19362261(+)$1	1	7	12	14.9999
(((((	chr9:132586129-132586485(-)$1	1	195	200	14.9999
(...)	chr19:13049399-13049620(+)$1	1	132	137	14.9999
(..((	chr2:113343485-113343758(+)$1	1	31	36	14.9999
)))).	chr2:132249779-132250019(-)$1	1	91	96	14.9999
..)))	chr7:130353384-130353664(-)$1	1	111	116	14.9999
((((.	chr15:63340578-63340960(+)$1	1	19	24	14.9999
(.(((	chr9:37422597-37422872(+)$1	1	72	77	14.9999
((((.	chr12:64173581-64173893(+)$1	1	59	64	14.9999
(((((	chr18:66382070-66382416(-)$1	1	287	292	14.9999
(((((	chr5:150158260-150158612(+)$1	1	81	86	14.9999
(((((	chr19:5622494-5622757(-)$1	1	67	72	14.9999
(((((	chr18:9102626-9102842(+)$1	1	24	29	14.9999
(((((	chr1:2125395-2125654(-)$1	1	99	104	14.9999
))..)	chr1:55181435-55181724(+)$1	1	155	160	14.9999
.))))	chr11:118965866-118966155(-)$1	1	203	208	14.9999
....)	chr1:44440676-44440879(+)$1	1	115	120	14.9999
)))))	chr7:96746922-96747295(+)$1	1	199	204	14.9999
(((((	chr4:1857564-1857897(-)$1	1	2	7	14.9999
)))))	chr22:19949949-19950178(+)$1	1	144	149	14.9999
)))))	chr8:53626533-53626773(-)$1	1	200	205	14.9999
((((.	chr6:30312843-30313090(+)$1	1	88	93	14.9999
.((((	chr16:1832867-1833144(+)$1	1	139	144	14.9999
((.(.	chr11:65655464-65655704(-)$1	1	4	9	14.9999
)))))	chr1:52344121-52344449(-)$1	1	122	127	14.9999
)))))	chr2:75185794-75186064(+)$1	1	111	116	14.9999
((((.	chr13:76123838-76124099(+)$1	1	181	186	14.9999
((((.	chr11:6624624-6624925(-)$1	1	22	27	14.9999
..)))	chr6:96969614-96969874(+)$1	1	145	150	14.9999
)))))	chr9:131418781-131419063(-)$1	1	183	188	14.9999
)))).	chr3:49059500-49059722(+)$1	1	150	155	14.9999
)))((	chr15:38746252-38746536(+)$1	1	231	236	14.9999
)))))	chr11:64019034-64019301(+)$1	1	75	80	14.9999
....)	chr15:59225575-59225883(-)$1	1	44	49	14.9999
..(((	chr2:231280811-231281150(+)$1	1	112	117	14.9999
..)))	chr1:8022748-8023013(+)$1	1	123	128	14.9999
(((((	chr14:101194631-101194867(+)$1	1	55	60	14.9999
)))))	chr7:99747087-99747303(+)$1	1	84	89	14.9999
))))(	chr11:71810188-71810404(-)$1	1	67	72	14.9999
...))	chr6:143832646-143832903(-)$1	1	241	246	14.9999
.))))	chr1:1509782-1510063(-)$1	1	275	280	14.9999
...))	chr9:127962949-127963242(+)$1	1	40	45	14.9999
(((((	chr11:47447651-47447906(-)$1	1	43	48	14.9999
((..(	chr17:80709879-80710200(+)$1	1	117	122	14.9999
....(	chr20:57617660-57617904(-)$1	1	81	86	14.9999
((.((	chr22:21984119-21984334(-)$1	1	51	56	14.9999
(((((	chr8:55047730-55048051(+)$1	1	148	153	14.9999
...))	chr12:57039557-57039796(-)$1	1	172	177	14.9999
.))))	chr8:103250940-103251270(-)$1	1	90	95	14.9999
)))))	chr20:56099068-56099343(-)$1	1	261	266	14.9999
(((.(	chr19:35739894-35740135(+)$1	1	128	133	14.9999
..(((	chr1:223900198-223900506(+)$1	1	66	71	14.9999
..)))	chr11:236884-237194(+)$1	1	281	286	14.9999
....(	chr11:71810096-71810388(-)$1	1	51	56	14.9999
))).)	chr7:1608752-1609003(-)$1	1	123	128	14.9999
..)))	chr11:62556394-62556611(+)$1	1	156	161	14.9999
(((((	chr6:43603500-43603759(+)$1	1	154	159	14.9999

#PSSM
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	
U : 0.96	u : 0.03	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	

#score	989.9999999999999
#seq	66
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_CDS_m1_run2.nuc.txt

#NT
UGGGACC	chr22:40718787-40719088(+)$1	301	231	238	12.4035
UGGGGCC	chr3:48465323-48465536(-)$1	213	187	194	17.0526
UGUGGCC	chr11:68029855-68030078(-)$1	223	38	45	12.9298
CGGGGCC	chr3:10291016-10291292(+)$1	276	149	156	13.5438
UGGGGCC	chr1:16475003-16475240(-)$1	237	53	60	17.0526
UGGGGCC	chr1:16474914-16475203(-)$1	289	16	23	17.0526
UGGGGCC	chr17:65103381-65103632(-)$1	251	187	194	17.0526
UGGGGCA	chr9:712990-713265(+)$1	275	57	64	12.8421
UGGGGGC	chr2:227662880-227663154(-)$1	274	95	102	12.4035
UGGGGCU	chr3:48465378-48465599(-)$1	221	36	43	12.8421
UGGGGCU	chr3:196673969-196674227(-)$1	258	142	149	12.8421
UGAGGCC	chr18:30350392-30350634(+)$1	242	92	99	13.0175
GGGGGCC	chr16:23079807-23080086(-)$1	279	230	237	13.4561
GGGGGCC	chr1:234743169-234743394(-)$1	225	170	177	13.4561
AGGGGCC	chr2:74709096-74709395(-)$1	299	102	109	13.3684
UGCGGCC	chr10:74034543-74034793(+)$1	250	121	128	13.3684
UGGGGCC	chr19:46404531-46404754(-)$1	223	81	88	17.0526
gggggcc	chr10:101379836-101380098(-)$1	262	43	50	13.4561
UGGAGCC	chr2:97482252-97482593(+)$1	341	123	130	12.7543
UGGUGCC	chrX:54209377-54209603(-)$1	226	24	31	12.8421
UGGUGCC	chr1:36752562-36752819(+)$1	257	135	142	12.8421
ugcggcc	chrX:152953908-152954145(+)$1	237	104	111	13.3684
UGGGGCC	chr3:196674923-196675180(-)$1	257	4	11	17.0526
UUGGGCC	chr2:171573378-171573613(+)$1	235	62	69	13.0175
UGGAGCC	chr3:49049622-49049845(+)$1	223	191	198	12.7543
UUGGGCC	chr1:213032316-213032564(+)$1	248	90	97	13.0175
CGGGGCC	chr6:114181134-114181388(+)$1	254	41	48	13.5438
UGAGGCC	chr2:171573798-171574028(+)$1	230	76	83	13.0175
UGGGGCC	chr6:89790573-89790882(+)$1	309	126	133	17.0526
UGGGGCC	chr17:7751511-7751775(+)$1	264	13	20	17.0526
AGGGGCC	chr21:34922690-34922947(+)$1	257	30	37	13.3684
UGGGGCG	chr1:205718991-205719267(-)$1	276	91	98	12.9298
UGGGGCA	chr3:49051310-49051545(+)$1	235	3	10	12.8421
AGGGGCC	chr4:124322974-124323231(+)$1	257	90	97	13.3684
UGGGGUC	chr9:140137211-140137440(+)$1	229	160	167	12.4035
UGGGACC	chr18:60242283-60242516(+)$1	233	93	100	12.4035
UGGGGAC	chr1:27238190-27238457(-)$1	267	43	50	12.4035
UGGGGCC	chr6:138202185-138202439(+)$1	254	132	139	17.0526
UGCGGCC	chr22:31741476-31741756(-)$1	280	192	199	13.3684
UGGGGCC	chr19:46387295-46387545(-)$1	250	3	10	17.0526
UUGGGCC	chr14:50360496-50360744(+)$1	248	12	19	13.0175
UUGGGCC	chr14:21560279-21560502(-)$1	223	115	122	13.0175
UGGGGCG	chr10:133784016-133784291(-)$1	275	190	197	12.9298
CGGGGCC	chr14:69256491-69256753(-)$1	262	44	51	13.5438
cggggcc	chr6:1313060-1313261(+)$1	201	165	172	13.5438
CGGGGCC	chr14:23451087-23451320(-)$1	233	116	123	13.5438
UGCGGCC	chr14:21560400-21560640(-)$1	240	19	26	13.3684
GGGGGCC	chr12:49420066-49420321(-)$1	255	113	120	13.4561
UGCGGCC	chr22:29445462-29445727(+)$1	265	3	10	13.3684
UGGGGCC	chr6:24357780-24358014(-)$1	234	212	219	17.0526
UUGGGCC	chr14:21560249-21560479(-)$1	230	92	99	13.0175
UGGGGCC	chr19:54972482-54972726(+)$1	244	116	123	17.0526
UGGUGCC	chr21:34924876-34925181(+)$1	305	94	101	12.8421
UGGGGCG	chr17:3513773-3514045(-)$1	272	18	25	12.9298
UGCGGCC	chr11:66384327-66384606(+)$1	279	42	49	13.3684
UCGGGCC	chr5:137089521-137089767(-)$1	246	72	79	12.6666

#otherMatches

#Struct PSSM
:dddd!!	chr6:30711648-30711889(-)$1	241	64	71	12.6666
mmccc55	chr22:40718787-40719088(+)$1	301	231	238	12.4035
]eeeee2	chr3:48465323-48465536(-)$1	213	187	194	17.0526
dd[ccc%	chr11:68029855-68030078(-)$1	223	38	45	12.9298
d:dddd[	chr3:10291016-10291292(+)$1	276	149	156	13.5438
mmccc]e	chr1:16475003-16475240(-)$1	237	53	60	17.0526
:EEEEEA	chr1:16474914-16475203(-)$1	289	16	23	17.0526
:EEEEE}	chr17:65103381-65103632(-)$1	251	187	194	17.0526
eeeccc+	chr9:712990-713265(+)$1	275	57	64	12.8421
Hgggggg	chr2:227662880-227663154(-)$1	274	95	102	12.4035
fffffah	chr3:48465378-48465599(-)$1	221	36	43	12.8421
eeeeeII	chr3:196673969-196674227(-)$1	258	142	149	12.8421
dffffff	chr18:30350392-30350634(+)$1	242	92	99	13.0175
JJJJJJJ	chr16:23079807-23080086(-)$1	279	230	237	13.4561
HHHHHHe	chr1:234743169-234743394(-)$1	225	170	177	13.4561
KEEEEE{	chr2:74709096-74709395(-)$1	299	102	109	13.3684
cccnnnn	chr10:74034543-74034793(+)$1	250	121	128	13.3684
d:EEEEE	chr19:46404531-46404754(-)$1	223	81	88	17.0526
GGGGGGG	chr10:101379836-101380098(-)$1	262	43	50	13.4561
:ffffff	chr2:97482252-97482593(+)$1	341	123	130	12.7543
EEE{DDD	chrX:54209377-54209603(-)$1	226	24	31	12.8421
ffffffl	chr1:36752562-36752819(+)$1	257	135	142	12.8421
mmmdddd	chrX:152953908-152954145(+)$1	237	104	111	13.3684
ddqqqqq	chr3:196674923-196675180(-)$1	257	4	11	17.0526
::eeeee	chr2:171573378-171573613(+)$1	235	62	69	13.0175
nnnnddd	chr3:49049622-49049845(+)$1	223	191	198	12.7543
iiiccc!	chr1:213032316-213032564(+)$1	248	90	97	13.0175
]bbdddd	chr6:114181134-114181388(+)$1	254	41	48	13.5438
dd[bb!!	chr2:171573798-171574028(+)$1	230	76	83	13.0175
eeeennn	chr6:89790573-89790882(+)$1	309	126	133	17.0526
{FFFFFF	chr17:7751511-7751775(+)$1	264	13	20	17.0526
ddfffff	chr21:34922690-34922947(+)$1	257	30	37	13.3684
bb22bbg	chr1:205718991-205719267(-)$1	276	91	98	12.9298
EEEEE::	chr3:49051310-49051545(+)$1	235	3	10	12.8421
eeeccc:	chr4:124322974-124323231(+)$1	257	90	97	13.3684
dddhhhh	chr9:140137211-140137440(+)$1	229	160	167	12.4035
[ccc[bb	chr18:60242283-60242516(+)$1	233	93	100	12.4035
hhhhh::	chr1:27238190-27238457(-)$1	267	43	50	12.4035
B}EEEEE	chr6:138202185-138202439(+)$1	254	132	139	17.0526
ggggggd	chr22:31741476-31741756(-)$1	280	192	199	13.3684
EE:dddd	chr19:46387295-46387545(-)$1	250	3	10	17.0526
ppcccbb	chr14:50360496-50360744(+)$1	248	12	19	13.0175
CJJJJJJ	chr14:21560279-21560502(-)$1	223	115	122	13.0175
FF}A::b	chr10:133784016-133784291(-)$1	275	190	197	12.9298
:eeeee!	chr14:69256491-69256753(-)$1	262	44	51	13.5438
e]dddd2	chr6:1313060-1313261(+)$1	201	165	172	13.5438
]ffffff	chr14:23451087-23451320(-)$1	233	116	123	13.5438
]eeeee2	chr14:21560400-21560640(-)$1	240	19	26	13.3684
{A{IIII	chr12:49420066-49420321(-)$1	255	113	120	13.4561
iiiiiii	chr22:29445462-29445727(+)$1	265	3	10	13.3684
lcccccc	chr6:24357780-24358014(-)$1	234	212	219	17.0526
CJJJJJJ	chr14:21560249-21560479(-)$1	230	92	99	13.0175
eeeeCCC	chr19:54972482-54972726(+)$1	244	116	123	17.0526
$ccclll	chr21:34924876-34925181(+)$1	305	94	101	12.8421
ffffff]	chr17:3513773-3514045(-)$1	272	18	25	12.9298
]a]cccc	chr11:66384327-66384606(+)$1	279	42	49	13.3684
ccc333g	chr5:137089521-137089767(-)$1	246	72	79	12.6666

#DB
.((((..	chr6:30711648-30711889(-)$1	1	64	71	12.6666
..)))..	chr22:40718787-40719088(+)$1	1	231	238	12.4035
.))))).	chr3:48465323-48465536(-)$1	1	187	194	17.0526
((.(((.	chr11:68029855-68030078(-)$1	1	38	45	12.9298
).((((.	chr3:10291016-10291292(+)$1	1	149	156	13.5438
..))).)	chr1:16475003-16475240(-)$1	1	53	60	17.0526
.((((((	chr1:16474914-16475203(-)$1	1	16	23	17.0526
.))))).	chr17:65103381-65103632(-)$1	1	187	194	17.0526
((((((.	chr9:712990-713265(+)$1	1	57	64	12.8421
(((((((	chr2:227662880-227663154(-)$1	1	95	102	12.4035
)))))))	chr3:48465378-48465599(-)$1	1	36	43	12.8421
)))))))	chr3:196673969-196674227(-)$1	1	142	149	12.8421
(((((((	chr18:30350392-30350634(+)$1	1	92	99	13.0175
)))))))	chr16:23079807-23080086(-)$1	1	230	237	13.4561
))))))(	chr1:234743169-234743394(-)$1	1	170	177	13.4561
.(((((.	chr2:74709096-74709395(-)$1	1	102	109	13.3684
(((....	chr10:74034543-74034793(+)$1	1	121	128	13.3684
).)))))	chr19:46404531-46404754(-)$1	1	81	88	17.0526
(((((((	chr10:101379836-101380098(-)$1	1	43	50	13.4561
.((((((	chr2:97482252-97482593(+)$1	1	123	130	12.7543
(((.(((	chrX:54209377-54209603(-)$1	1	24	31	12.8421
((((((.	chr1:36752562-36752819(+)$1	1	135	142	12.8421
...))))	chrX:152953908-152954145(+)$1	1	104	111	13.3684
((.....	chr3:196674923-196675180(-)$1	1	4	11	17.0526
..(((((	chr2:171573378-171573613(+)$1	1	62	69	13.0175
....)))	chr3:49049622-49049845(+)$1	1	191	198	12.7543
((((((.	chr1:213032316-213032564(+)$1	1	90	97	13.0175
.))))))	chr6:114181134-114181388(+)$1	1	41	48	13.5438
((.((..	chr2:171573798-171574028(+)$1	1	76	83	13.0175
((((...	chr6:89790573-89790882(+)$1	1	126	133	17.0526
.((((((	chr17:7751511-7751775(+)$1	1	13	20	17.0526
(((((((	chr21:34922690-34922947(+)$1	1	30	37	13.3684
))..)))	chr1:205718991-205719267(-)$1	1	91	98	12.9298
(((((..	chr3:49051310-49051545(+)$1	1	3	10	12.8421
)))))).	chr4:124322974-124323231(+)$1	1	90	97	13.3684
)))))))	chr9:140137211-140137440(+)$1	1	160	167	12.4035
.(((.((	chr18:60242283-60242516(+)$1	1	93	100	12.4035
)))))..	chr1:27238190-27238457(-)$1	1	43	50	12.4035
).)))))	chr6:138202185-138202439(+)$1	1	132	139	17.0526
(((((((	chr22:31741476-31741756(-)$1	1	192	199	13.3684
((.((((	chr19:46387295-46387545(-)$1	1	3	10	17.0526
..)))))	chr14:50360496-50360744(+)$1	1	12	19	13.0175
)))))))	chr14:21560279-21560502(-)$1	1	115	122	13.0175
)).)..(	chr10:133784016-133784291(-)$1	1	190	197	12.9298
.(((((.	chr14:69256491-69256753(-)$1	1	44	51	13.5438
).)))).	chr6:1313060-1313261(+)$1	1	165	172	13.5438
.))))))	chr14:23451087-23451320(-)$1	1	116	123	13.5438
.))))).	chr14:21560400-21560640(-)$1	1	19	26	13.3684
.(.((((	chr12:49420066-49420321(-)$1	1	113	120	13.4561
(((((((	chr22:29445462-29445727(+)$1	1	3	10	13.3684
.))))))	chr6:24357780-24358014(-)$1	1	212	219	17.0526
)))))))	chr14:21560249-21560479(-)$1	1	92	99	13.0175
))))(((	chr19:54972482-54972726(+)$1	1	116	123	17.0526
.(((...	chr21:34924876-34925181(+)$1	1	94	101	12.8421
)))))).	chr17:3513773-3514045(-)$1	1	18	25	12.9298
.).))))	chr11:66384327-66384606(+)$1	1	42	49	13.3684
)))...)	chr5:137089521-137089767(-)$1	1	72	79	12.6666

#PSSM
U : 0.77	C : 0.07	G : 0.05	A : 0.05	g : 0.01	u : 0.01	c : 0.01	
G : 0.84	U : 0.08	g : 0.05	C : 0.01	
G : 0.80	C : 0.08	A : 0.03	g : 0.03	U : 0.01	c : 0.01	
G : 0.84	g : 0.05	U : 0.05	A : 0.03	C : 0.01	
G : 0.91	g : 0.05	A : 0.03	
C : 0.89	c : 0.05	G : 0.01	U : 0.01	A : 0.01	
C : 0.82	c : 0.05	G : 0.05	A : 0.03	U : 0.03	

#score	792.0877192982466
#seq	57
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_transcript_m1_run1.nuc.txt

#NT
CCCUUCUCC	chr1:33236653-33236962(+)$1	309	131	140	19.0312
CCCUUCCUC	chrX:153214184-153214448(-)$1	264	130	139	18.7968
cccugcccc	chr19:56173205-56173438(+)$1	233	105	114	19.5000
CCCUGCCCC	chr20:35090642-35090908(+)$1	266	107	116	19.5000
cccuucccc	chr17:29422021-29422292(+)$1	271	75	84	23.4062
GCCUUCCCC	chr11:64621142-64621406(-)$1	264	115	124	18.9531
CCCUUCUCC	chr12:56636417-56636710(-)$1	293	141	150	19.0312
CCCUUCCCC	chr12:120649949-120650225(-)$1	276	132	141	23.4062
CCCUUCCCC	chr15:74923848-74924160(-)$1	312	168	177	23.4062
CCCUUCCCC	chr1:100503843-100504085(+)$1	242	129	138	23.4062
CUCUUCCCC	chr6:36199203-36199481(+)$1	278	124	133	19.3437
CCCUUCCCC	chr1:2125606-2125832(-)$1	226	103	112	23.4062
CCCUUCACC	chr2:74588270-74588509(-)$1	239	35	44	18.8750
CCCCUCCCC	chr5:10353801-10354037(+)$1	236	12	21	19.8125
CCCCUCCCC	chr22:20936807-20937126(+)$1	319	163	172	19.8125
CCCUUCCAC	chr16:28847935-28848199(+)$1	264	139	148	18.7187
CCCUUUCCC	chr6:31774519-31774771(-)$1	252	10	19	18.9531
cccuucccc	chr4:726034-726313(+)$1	279	103	112	23.4062
cacuucccc	chr17:7417148-7417445(+)$1	297	188	197	19.0312
cccuucccc	chr5:138941211-138941475(+)$1	264	101	110	23.4062
CCCUUCCCU	chr11:62369759-62370137(-)$1	378	243	252	18.8750
CUCUUCCCC	chr6:31729720-31729987(+)$1	267	121	130	19.3437
CCCAUCCCC	chr11:60899601-60899865(-)$1	264	129	138	19.7343
CUCUUCCCC	chr19:47990940-47991227(-)$1	287	138	147	19.3437
CCCUUCCCC	chr17:26900257-26900520(-)$1	263	110	119	23.4062
CCCCUCCCC	chr6:34213665-34213911(+)$1	246	71	80	19.8125
cccaucccc	chr13:113537302-113537634(+)$1	332	23	32	19.7343
GCCUUCCCC	chr20:30781614-30781908(-)$1	294	121	130	18.9531
cccuucccu	chr19:56172598-56172853(+)$1	255	11	20	18.8750
GCCUUCCCC	chr11:67810548-67810820(+)$1	272	155	164	18.9531
CCCGUCCCC	chr5:179227429-179227689(-)$1	260	80	89	19.4218
UCCUUCCCC	chr12:49444103-49444409(-)$1	306	37	46	18.7968
CCCUUCCCC	chr3:47046121-47046387(+)$1	266	134	143	23.4062
cccuucccc	chr17:29058625-29058933(+)$1	308	138	147	23.4062
CCCUUCCCC	chr17:4848935-4849220(-)$1	285	36	45	23.4062
CUCUUCCCC	chr17:46699951-46700237(-)$1	286	6	15	19.3437
CUCUUCCCC	chr20:1350427-1350703(-)$1	276	134	143	19.3437
CCCCUCCCC	chr11:126132876-126133163(-)$1	287	109	118	19.8125
CCCUGCCCC	chr12:49332513-49332790(-)$1	277	115	124	19.5000
ccccucccc	chr3:184032238-184032565(+)$1	327	263	272	19.8125
CCCAUCCCC	chr6:43588564-43588867(-)$1	303	148	157	19.7343
cccuuccuc	chr7:65361452-65361747(+)$1	295	76	85	18.7968
CCCUUGCCC	chr17:76120378-76120642(-)$1	264	134	143	18.7968
cccuucccc	chr11:118965419-118965683(-)$1	264	137	146	23.4062
cccuuuccc	chr20:62572992-62573423(-)$1	431	4	13	18.9531
CCCUUCCCU	chr19:42753365-42753609(-)$1	244	84	93	18.8750
CCCUUCCCC	chr15:72491796-72492109(-)$1	313	156	165	23.4062
CCCUGCCCC	chr17:27207042-27207303(-)$1	261	213	222	19.5000
CCCUGCCCC	chr11:315044-315324(+)$1	280	138	147	19.5000
CCCUGCCCC	chr4:103747909-103748140(-)$1	231	72	81	19.5000
cccuucucc	chr5:132096059-132096343(-)$1	284	115	124	19.0312
CCCUGCCCC	chr12:125284619-125284888(-)$1	269	83	92	19.5000
CCCAUCCCC	chr10:75568039-75568340(-)$1	301	145	154	19.7343
CCCUUCGCC	chr15:44085870-44086148(+)$1	278	129	138	18.8750
cgcuucccc	chr7:2099018-2099346(-)$1	328	99	108	19.0312
cccuuuccc	chr9:33981640-33981967(-)$1	327	120	129	18.9531
cccuucccc	chr6:34212554-34212783(+)$1	229	190	199	23.4062
CCCUUCCCC	chr2:27249502-27249783(+)$1	281	155	164	23.4062
CCGUUCCCC	chr16:88712456-88712721(-)$1	265	59	68	18.5625
cccuucccc	chr17:30263987-30264300(+)$1	313	138	147	23.4062
CCCUUCCCC	chr10:74127783-74128059(-)$1	276	255	264	23.4062
cccuucccc	chr17:4793022-4793407(+)$1	385	108	117	23.4062
ccccucccc	chr17:7154693-7154974(-)$1	281	5	14	19.8125

#otherMatches

#Struct PSSM
$$$$eeeee	chr1:44686822-44687107(-)$1	285	87	96	19.7343
yyyyyyyyy	chr1:33236653-33236962(+)$1	309	131	140	19.0312
::FFFFFF:	chrX:153214184-153214448(-)$1	264	130	139	18.7968
:::::::::	chr19:56173205-56173438(+)$1	233	105	114	19.5000
7777eeeee	chr20:35090642-35090908(+)$1	266	107	116	19.5000
a]ffffffc	chr17:29422021-29422292(+)$1	271	75	84	23.4062
ddddrrrrr	chr11:64621142-64621406(-)$1	264	115	124	18.9531
ff:::::::	chr12:56636417-56636710(-)$1	293	141	150	19.0312
ABB{DDDDK	chr12:120649949-120650225(-)$1	276	132	141	23.4062
////////C	chr15:74923848-74924160(-)$1	312	168	177	23.4062
C@@@@@@@@	chr1:100503843-100504085(+)$1	242	129	138	23.4062
c::::::::	chr6:36199203-36199481(+)$1	278	124	133	19.3437
:::::::::	chr1:2125606-2125832(-)$1	226	103	112	23.4062
IIIIIBBFF	chr2:74588270-74588509(-)$1	239	35	44	18.8750
dd:::::::	chr5:10353801-10354037(+)$1	236	12	21	19.8125
D}AA}CCC}	chr22:20936807-20937126(+)$1	319	163	172	19.8125
eeetttttt	chr16:28847935-28848199(+)$1	264	139	148	18.7187
Fbboooooo	chr6:31774519-31774771(-)$1	252	10	19	18.9531
:::::::::	chr4:726034-726313(+)$1	279	103	112	23.4062
^^^^^^^^^	chr17:7417148-7417445(+)$1	297	188	197	19.0312
d::::::::	chr5:138941211-138941475(+)$1	264	101	110	23.4062
ddd:::::f	chr11:62369759-62370137(-)$1	378	243	252	18.8750
:::::::::	chr6:31729720-31729987(+)$1	267	121	130	19.3437
D::::::BB	chr11:60899601-60899865(-)$1	264	129	138	19.7343
hhwwwwwww	chr19:47990940-47991227(-)$1	287	138	147	19.3437
ggg[ccc##	chr17:26900257-26900520(-)$1	263	110	119	23.4062
ffffffeee	chr6:34213665-34213911(+)$1	246	71	80	19.8125
:::::::::	chr13:113537302-113537634(+)$1	332	23	32	19.7343
C}CCCYYCC	chr20:30781614-30781908(-)$1	294	121	130	18.9531
LLLCCC{DD	chr19:56172598-56172853(+)$1	255	11	20	18.8750
ggggggg55	chr11:67810548-67810820(+)$1	272	155	164	18.9531
:::a[bb[e	chr5:179227429-179227689(-)$1	260	80	89	19.4218
mmmmbb999	chr12:49444103-49444409(-)$1	306	37	46	18.7968
:::::::::	chr3:47046121-47046387(+)$1	266	134	143	23.4062
ZZFFFFFF:	chr17:29058625-29058933(+)$1	308	138	147	23.4062
:::::::::	chr17:4848935-4849220(-)$1	285	36	45	23.4062
DDiiiiiii	chr17:46699951-46700237(-)$1	286	6	15	19.3437
:::::::::	chr20:1350427-1350703(-)$1	276	134	143	19.3437
nnnnbb22a	chr11:126132876-126133163(-)$1	287	109	118	19.8125
:::::::GG	chr12:49332513-49332790(-)$1	277	115	124	19.5000
~~~~DDDDA	chr3:184032238-184032565(+)$1	327	263	272	19.8125
}EEEEE}BB	chr6:43588564-43588867(-)$1	303	148	157	19.7343
:::::::::	chr7:65361452-65361747(+)$1	295	76	85	18.7968
ttttteeee	chr17:76120378-76120642(-)$1	264	134	143	18.7968
+++++++++	chr11:118965419-118965683(-)$1	264	137	146	23.4062
:::::FFFF	chr20:62572992-62573423(-)$1	431	4	13	18.9531
000000000	chr19:42753365-42753609(-)$1	244	84	93	18.8750
ffffff:gg	chr15:72491796-72492109(-)$1	313	156	165	23.4062
hhhhhhhhD	chr17:27207042-27207303(-)$1	261	213	222	19.5000
4444eeeee	chr11:315044-315324(+)$1	280	138	147	19.5000
ssssdddd]	chr4:103747909-103748140(-)$1	231	72	81	19.5000
:::::::::	chr5:132096059-132096343(-)$1	284	115	124	19.0312
::::bb[cc	chr12:125284619-125284888(-)$1	269	83	92	19.5000
grrrrrrrr	chr10:75568039-75568340(-)$1	301	145	154	19.7343
:::::ccc!	chr15:44085870-44086148(+)$1	278	129	138	18.8750
:cccqqqqq	chr7:2099018-2099346(-)$1	328	99	108	19.0312
:::::::::	chr9:33981640-33981967(-)$1	327	120	129	18.9531
B}EEEEEBB	chr6:34212554-34212783(+)$1	229	190	199	23.4062
:HHHHHHHH	chr2:27249502-27249783(+)$1	281	155	164	23.4062
FFFFFFBBP	chr16:88712456-88712721(-)$1	265	59	68	18.5625
FFF:::JJJ	chr17:30263987-30264300(+)$1	313	138	147	23.4062
@@@@@@@@@	chr10:74127783-74128059(-)$1	276	255	264	23.4062
dd:::::::	chr17:4793022-4793407(+)$1	385	108	117	23.4062
EEE::::::	chr17:7154693-7154974(-)$1	281	5	14	19.8125

#DB
....(((((	chr1:44686822-44687107(-)$1	1	87	96	19.7343
.........	chr1:33236653-33236962(+)$1	1	131	140	19.0312
..((((((.	chrX:153214184-153214448(-)$1	1	130	139	18.7968
.........	chr19:56173205-56173438(+)$1	1	105	114	19.5000
....)))))	chr20:35090642-35090908(+)$1	1	107	116	19.5000
).)))))))	chr17:29422021-29422292(+)$1	1	75	84	23.4062
((((.....	chr11:64621142-64621406(-)$1	1	115	124	18.9531
)).......	chr12:56636417-56636710(-)$1	1	141	150	19.0312
(((.((((.	chr12:120649949-120650225(-)$1	1	132	141	23.4062
........)	chr15:74923848-74924160(-)$1	1	168	177	23.4062
)........	chr1:100503843-100504085(+)$1	1	129	138	23.4062
)........	chr6:36199203-36199481(+)$1	1	124	133	19.3437
.........	chr1:2125606-2125832(-)$1	1	103	112	23.4062
(((((((((	chr2:74588270-74588509(-)$1	1	35	44	18.8750
)).......	chr5:10353801-10354037(+)$1	1	12	21	19.8125
).)).))).	chr22:20936807-20937126(+)$1	1	163	172	19.8125
(((......	chr16:28847935-28848199(+)$1	1	139	148	18.7187
(((......	chr6:31774519-31774771(-)$1	1	10	19	18.9531
.........	chr4:726034-726313(+)$1	1	103	112	23.4062
.........	chr17:7417148-7417445(+)$1	1	188	197	19.0312
)........	chr5:138941211-138941475(+)$1	1	101	110	23.4062
))).....(	chr11:62369759-62370137(-)$1	1	243	252	18.8750
.........	chr6:31729720-31729987(+)$1	1	121	130	19.3437
)......((	chr11:60899601-60899865(-)$1	1	129	138	19.7343
((.......	chr19:47990940-47991227(-)$1	1	138	147	19.3437
(((.(((..	chr17:26900257-26900520(-)$1	1	110	119	23.4062
(((((((((	chr6:34213665-34213911(+)$1	1	71	80	19.8125
.........	chr13:113537302-113537634(+)$1	1	23	32	19.7343
).)))..))	chr20:30781614-30781908(-)$1	1	121	130	18.9531
...(((.((	chr19:56172598-56172853(+)$1	1	11	20	18.8750
)))))))..	chr11:67810548-67810820(+)$1	1	155	164	18.9531
...(.((.(	chr5:179227429-179227689(-)$1	1	80	89	19.4218
....))...	chr12:49444103-49444409(-)$1	1	37	46	18.7968
.........	chr3:47046121-47046387(+)$1	1	134	143	23.4062
..)))))).	chr17:29058625-29058933(+)$1	1	138	147	23.4062
.........	chr17:4848935-4849220(-)$1	1	36	45	23.4062
(((((((((	chr17:46699951-46700237(-)$1	1	6	15	19.3437
.........	chr20:1350427-1350703(-)$1	1	134	143	19.3437
....))..)	chr11:126132876-126133163(-)$1	1	109	118	19.8125
.......))	chr12:49332513-49332790(-)$1	1	115	124	19.5000
....)))))	chr3:184032238-184032565(+)$1	1	263	272	19.8125
.))))).))	chr6:43588564-43588867(-)$1	1	148	157	19.7343
.........	chr7:65361452-65361747(+)$1	1	76	85	18.7968
.....))))	chr17:76120378-76120642(-)$1	1	134	143	18.7968
.........	chr11:118965419-118965683(-)$1	1	137	146	23.4062
.....((((	chr20:62572992-62573423(-)$1	1	4	13	18.9531
.........	chr19:42753365-42753609(-)$1	1	84	93	18.8750
)))))).((	chr15:72491796-72492109(-)$1	1	156	165	23.4062
)))))))))	chr17:27207042-27207303(-)$1	1	213	222	19.5000
....)))))	chr11:315044-315324(+)$1	1	138	147	19.5000
....)))).	chr4:103747909-103748140(-)$1	1	72	81	19.5000
.........	chr5:132096059-132096343(-)$1	1	115	124	19.0312
....((.((	chr12:125284619-125284888(-)$1	1	83	92	19.5000
(........	chr10:75568039-75568340(-)$1	1	145	154	19.7343
.....(((.	chr15:44085870-44086148(+)$1	1	129	138	18.8750
.(((.....	chr7:2099018-2099346(-)$1	1	99	108	19.0312
.........	chr9:33981640-33981967(-)$1	1	120	129	18.9531
).)))))))	chr6:34212554-34212783(+)$1	1	190	199	23.4062
.((((((((	chr2:27249502-27249783(+)$1	1	155	164	23.4062
((((((((.	chr16:88712456-88712721(-)$1	1	59	68	18.5625
)))...(((	chr17:30263987-30264300(+)$1	1	138	147	23.4062
.........	chr10:74127783-74128059(-)$1	1	255	264	23.4062
)).......	chr17:4793022-4793407(+)$1	1	108	117	23.4062
(((......	chr17:7154693-7154974(-)$1	1	5	14	19.8125

#PSSM
C : 0.64	c : 0.29	G : 0.04	U : 0.01	
C : 0.62	c : 0.26	U : 0.07	a : 0.01	g : 0.01	
C : 0.68	c : 0.29	G : 0.01	
U : 0.56	u : 0.25	A : 0.06	C : 0.06	c : 0.03	a : 0.01	G : 0.01	
U : 0.60	u : 0.28	G : 0.09	g : 0.01	
C : 0.67	c : 0.26	u : 0.03	U : 0.01	G : 0.01	
C : 0.64	c : 0.28	U : 0.03	A : 0.01	u : 0.01	G : 0.01	
C : 0.67	c : 0.28	U : 0.01	A : 0.01	u : 0.01	
C : 0.67	c : 0.28	U : 0.03	u : 0.01	

#score	1307.21875
#seq	64
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_CDS_m2_run1.nuc.txt

#NT
GGGGCCC	chr1:54703741-54704049(-)$1	308	57	64	13.5373
GGGGCCC	chr8:145107380-145107660(-)$1	280	17	24	13.5373
GAGGCCC	chr11:63884384-63884647(-)$1	263	245	252	16.9701
GAGGCCC	chr4:1217197-1217439(-)$1	242	58	65	16.9701
GGGGCCC	chr5:154135195-154135469(+)$1	274	13	20	13.5373
GAGGCCU	chr7:127669442-127669695(+)$1	253	211	218	13.0149
GAGGCUC	chr7:923922-924183(+)$1	261	86	93	12.5671
CAGGCCC	chr20:32255447-32255704(-)$1	257	5	12	12.8656
GAGGACC	chr3:13008826-13009087(-)$1	261	162	169	12.3432
GAGUCCC	chr19:58991392-58991660(-)$1	268	141	148	12.7164
GAGCCCC	chr7:5460767-5461001(-)$1	234	13	20	12.7910
GGGGCCC	chr7:100171714-100172004(-)$1	290	64	71	13.5373
GAGGCCA	chr12:133295290-133295567(+)$1	277	186	193	13.0149
GAGGCGC	chr21:45560805-45561060(+)$1	255	149	156	12.7910
GAUGCCC	chr11:66393949-66394177(+)$1	228	97	104	12.5671
GGGGCCC	chr19:36517721-36517989(+)$1	268	121	128	13.5373
GUGGCCC	chr19:2270315-2270599(+)$1	284	65	72	13.0895
GAGGCCG	chr19:577717-577961(+)$1	244	121	128	13.1641
GGGGCCC	chr17:80788091-80788385(+)$1	294	269	276	13.5373
AAGGCCC	chr16:1416221-1416476(-)$1	255	6	13	12.8656
GAGCCCC	chr12:49523942-49524185(-)$1	243	57	64	12.7910
GAGGCCC	chr7:1498714-1498969(-)$1	255	218	225	16.9701
GAGGCGC	chr17:79679324-79679578(+)$1	254	141	148	12.7910
GAGGUCC	chr11:63883882-63884139(-)$1	257	94	101	12.2686
GAGGCCG	chr19:2270412-2270675(+)$1	263	52	59	13.1641
GAGGCCC	chr11:63884306-63884551(-)$1	245	149	156	16.9701
GAGGCCU	chr7:127669509-127669777(+)$1	268	144	151	13.0149
GAGGCCC	chrX:41193694-41193956(+)$1	262	222	229	16.9701
GUGGCCC	chr20:57581386-57581685(-)$1	299	24	31	13.0895
GAUGCCC	chr19:3637677-3637973(-)$1	296	150	157	12.5671
GAggcgc	chr22:50639562-50639858(+)$1	296	83	90	12.7910
GAGGCCC	chr19:1008639-1008931(-)$1	292	279	286	16.9701
GAGGCCC	chr19:798419-798763(+)$1	344	220	227	16.9701
GAGGCGC	chr2:219265225-219265524(+)$1	299	176	183	12.7910
GAGACCC	chr8:145111044-145111293(-)$1	249	164	171	12.7910
GAAGCCC	chr19:10406921-10407175(+)$1	254	44	51	12.4179
GAGGCCA	chr22:50016770-50017017(-)$1	247	47	54	13.0149
GAUGCCC	chr11:66393821-66394078(+)$1	257	225	232	12.5671
CAGGCCC	chr19:3543229-3543512(-)$1	283	4	11	12.8656
GAGCCCC	chr19:541044-541307(+)$1	263	106	113	12.7910
GACGCCC	chr11:637292-637538(+)$1	246	209	216	12.4179
CAGGCCC	chr19:36526216-36526512(+)$1	296	0	7	12.8656
GAGGCCC	chrX:41193774-41194026(+)$1	252	142	149	16.9701
GAGGCCG	chr8:144909489-144909794(-)$1	305	213	220	13.1641
AAGGCCC	chr16:85392842-85393087(+)$1	245	154	161	12.8656
GAGGCCA	chr22:50016817-50017059(-)$1	242	89	96	13.0149
gAGGCCC	chr19:2227161-2227486(+)$1	325	11	18	16.9701
GAGGCCC	chr11:63884767-63885020(-)$1	253	216	223	16.9701
GGGGCCC	chr7:127670519-127670770(+)$1	251	44	51	13.5373
GAGGACC	chr6:3259135-3259452(+)$1	317	77	84	12.3432
GAGGCCG	chr8:144672119-144672367(-)$1	248	179	186	13.1641
CAGGCCC	chr1:36788436-36788683(+)$1	247	103	110	12.8656
GAGGCCC	chr3:195622185-195622431(-)$1	246	150	157	16.9701
GUGGCCC	chr13:114144719-114145012(-)$1	293	35	42	13.0895
AAGGCCC	chr16:50342178-50342532(+)$1	354	19	26	12.8656
GAGGCAC	chr17:7476604-7476859(+)$1	255	144	151	12.6417
GAGGCCG	chr17:76116795-76117065(-)$1	270	58	65	13.1641
GAGACCC	chr17:79680152-79680406(+)$1	254	1	8	12.7910
GAGUCCC	chr16:4393860-4394173(-)$1	313	51	58	12.7164
GAGGCCC	chr19:58990962-58991210(-)$1	248	35	42	16.9701
GAGGCCU	chr19:11201097-11201428(+)$1	331	181	188	13.0149
GAGGCAC	chr4:151504840-151505109(-)$1	269	175	182	12.6417
GAGGCCC	chr20:57581853-57582178(-)$1	325	174	181	16.9701
GGGGCCC	chr19:863083-863375(+)$1	292	18	25	13.5373
AAGGCCC	chr19:1416330-1416606(+)$1	276	208	215	12.8656
GAGACCC	chr19:46184811-46185130(+)$1	319	99	106	12.7910

#otherMatches

#Struct PSSM
a22eeee	chr7:138145265-138145520(+)$1	255	90	97	13.5373
"""eeee	chr1:54703741-54704049(-)$1	308	57	64	13.5373
d[dddd[	chr8:145107380-145107660(-)$1	280	17	24	13.5373
EEEEE}B	chr11:63884384-63884647(-)$1	263	245	252	16.9701
ddd]bba	chr4:1217197-1217439(-)$1	242	58	65	16.9701
bbccc!!	chr5:154135195-154135469(+)$1	274	13	20	13.5373
obbbbbb	chr7:127669442-127669695(+)$1	253	211	218	13.0149
mccc333	chr7:923922-924183(+)$1	261	86	93	12.5671
bb"""hh	chr20:32255447-32255704(-)$1	257	5	12	12.8656
d[ddddl	chr3:13008826-13009087(-)$1	261	162	169	12.3432
22a]eee	chr19:58991392-58991660(-)$1	268	141	148	12.7164
GGGGGGG	chr7:5460767-5461001(-)$1	234	13	20	12.7910
iiiiiii	chr7:100171714-100172004(-)$1	290	64	71	13.5373
bb]ccc]	chr12:133295290-133295567(+)$1	277	186	193	13.0149
eeennnn	chr21:45560805-45561060(+)$1	255	149	156	12.7910
ffcccvv	chr11:66393949-66394177(+)$1	228	97	104	12.5671
nnngggg	chr19:36517721-36517989(+)$1	268	121	128	13.5373
GGGGGGb	chr19:2270315-2270599(+)$1	284	65	72	13.0895
emmmmee	chr19:577717-577961(+)$1	244	121	128	13.1641
phhhhhh	chr17:80788091-80788385(+)$1	294	269	276	13.5373
nnccc::	chr16:1416221-1416476(-)$1	255	6	13	12.8656
C{EEEEE	chr12:49523942-49524185(-)$1	243	57	64	12.7910
bbccchh	chr7:1498714-1498969(-)$1	255	218	225	16.9701
FFFFFFC	chr17:79679324-79679578(+)$1	254	141	148	12.7910
eeeeeee	chr11:63883882-63884139(-)$1	257	94	101	12.2686
GGGGGG{	chr19:2270412-2270675(+)$1	263	52	59	13.1641
###ccco	chr11:63884306-63884551(-)$1	245	149	156	16.9701
CCYYCCC	chr7:127669509-127669777(+)$1	268	144	151	13.0149
=======	chrX:41193694-41193956(+)$1	262	222	229	16.9701
DDDDBBb	chr20:57581386-57581685(-)$1	299	24	31	13.0895
c[eeeee	chr19:3637677-3637973(-)$1	296	150	157	12.5671
eefffff	chr22:50639562-50639858(+)$1	296	83	90	12.7910
a22bb::	chr19:1008639-1008931(-)$1	292	279	286	16.9701
c[ggggg	chr19:798419-798763(+)$1	344	220	227	16.9701
ffff[dd	chr2:219265225-219265524(+)$1	299	176	183	12.7910
dnnnnnd	chr8:145111044-145111293(-)$1	249	164	171	12.7910
ssshhhh	chr19:10406921-10407175(+)$1	254	44	51	12.4179
d]ccc::	chr22:50016770-50017017(-)$1	247	47	54	13.0149
eecccvv	chr11:66393821-66394078(+)$1	257	225	232	12.5671
HHHHHHD	chr19:3543229-3543512(-)$1	283	4	11	12.8656
DKKJJJJ	chr19:541044-541307(+)$1	263	106	113	12.7910
JJ}DDDD	chr11:637292-637538(+)$1	246	209	216	12.4179
IIIIIII	chr19:36526216-36526512(+)$1	296	0	7	12.8656
=======	chrX:41193774-41194026(+)$1	252	142	149	16.9701
eeeeenn	chr8:144909489-144909794(-)$1	305	213	220	13.1641
]ddddee	chr16:85392842-85393087(+)$1	245	154	161	12.8656
ceeeee5	chr22:50016817-50017059(-)$1	242	89	96	13.0149
F:EEEEE	chr19:2227161-2227486(+)$1	325	11	18	16.9701
FFFFFFC	chr11:63884767-63885020(-)$1	253	216	223	16.9701
FFFFLLL	chr7:127670519-127670770(+)$1	251	44	51	13.5373
!!ddddm	chr6:3259135-3259452(+)$1	317	77	84	12.3432
d[eeeee	chr8:144672119-144672367(-)$1	248	179	186	13.1641
a333ddd	chr1:36788436-36788683(+)$1	247	103	110	12.8656
fbb[ccc	chr3:195622185-195622431(-)$1	246	150	157	16.9701
wwwwccc	chr13:114144719-114145012(-)$1	293	35	42	13.0895
c[bb###	chr16:50342178-50342532(+)$1	354	19	26	12.8656
c[cccpp	chr17:7476604-7476859(+)$1	255	144	151	12.6417
IIII::c	chr17:76116795-76117065(-)$1	270	58	65	13.1641
b[dddd[	chr17:79680152-79680406(+)$1	254	1	8	12.7910
ffff:::	chr16:4393860-4394173(-)$1	313	51	58	12.7164
tt=====	chr19:58990962-58991210(-)$1	248	35	42	16.9701
eeeeea]	chr19:11201097-11201428(+)$1	331	181	188	13.0149
dddd]dd	chr4:151504840-151505109(-)$1	269	175	182	12.6417
clllccc	chr20:57581853-57582178(-)$1	325	174	181	16.9701
FF::eee	chr19:863083-863375(+)$1	292	18	25	13.5373
fffffcc	chr19:1416330-1416606(+)$1	276	208	215	12.8656
33ddddd	chr19:46184811-46185130(+)$1	319	99	106	12.7910

#DB
)..))))	chr7:138145265-138145520(+)$1	1	90	97	13.5373
...((((	chr1:54703741-54704049(-)$1	1	57	64	13.5373
(.((((.	chr8:145107380-145107660(-)$1	1	17	24	13.5373
))))).)	chr11:63884384-63884647(-)$1	1	245	252	16.9701
))).)))	chr4:1217197-1217439(-)$1	1	58	65	16.9701
(((((..	chr5:154135195-154135469(+)$1	1	13	20	13.5373
.))))))	chr7:127669442-127669695(+)$1	1	211	218	13.0149
.)))...	chr7:923922-924183(+)$1	1	86	93	12.5671
((...((	chr20:32255447-32255704(-)$1	1	5	12	12.8656
(.((((.	chr3:13008826-13009087(-)$1	1	162	169	12.3432
..).)))	chr19:58991392-58991660(-)$1	1	141	148	12.7164
(((((((	chr7:5460767-5461001(-)$1	1	13	20	12.7910
(((((((	chr7:100171714-100172004(-)$1	1	64	71	13.5373
)).))).	chr12:133295290-133295567(+)$1	1	186	193	13.0149
(((....	chr21:45560805-45561060(+)$1	1	149	156	12.7910
(((((..	chr11:66393949-66394177(+)$1	1	97	104	12.5671
...))))	chr19:36517721-36517989(+)$1	1	121	128	13.5373
(((((((	chr19:2270315-2270599(+)$1	1	65	72	13.0895
(....))	chr19:577717-577961(+)$1	1	121	128	13.1641
.))))))	chr17:80788091-80788385(+)$1	1	269	276	13.5373
..)))..	chr16:1416221-1416476(-)$1	1	6	13	12.8656
(.(((((	chr12:49523942-49524185(-)$1	1	57	64	12.7910
)))))))	chr7:1498714-1498969(-)$1	1	218	225	16.9701
)))))))	chr17:79679324-79679578(+)$1	1	141	148	12.7910
)))))((	chr11:63883882-63884139(-)$1	1	94	101	12.2686
((((((.	chr19:2270412-2270675(+)$1	1	52	59	13.1641
...(((.	chr11:63884306-63884551(-)$1	1	149	156	16.9701
))..)))	chr7:127669509-127669777(+)$1	1	144	151	13.0149
(((((((	chrX:41193694-41193956(+)$1	1	222	229	16.9701
(((((((	chr20:57581386-57581685(-)$1	1	24	31	13.0895
(.(((((	chr19:3637677-3637973(-)$1	1	150	157	12.5671
(((((((	chr22:50639562-50639858(+)$1	1	83	90	12.7910
)..))..	chr19:1008639-1008931(-)$1	1	279	286	16.9701
(.(((((	chr19:798419-798763(+)$1	1	220	227	16.9701
((((.((	chr2:219265225-219265524(+)$1	1	176	183	12.7910
(.....)	chr8:145111044-145111293(-)$1	1	164	171	12.7910
...))))	chr19:10406921-10407175(+)$1	1	44	51	12.4179
).)))..	chr22:50016770-50017017(-)$1	1	47	54	13.0149
(((((..	chr11:66393821-66394078(+)$1	1	225	232	12.5671
(((((((	chr19:3543229-3543512(-)$1	1	4	11	12.8656
(..((((	chr19:541044-541307(+)$1	1	106	113	12.7910
)).))))	chr11:637292-637538(+)$1	1	209	216	12.4179
(((((((	chr19:36526216-36526512(+)$1	1	0	7	12.8656
(((((((	chrX:41193774-41194026(+)$1	1	142	149	16.9701
(((((..	chr8:144909489-144909794(-)$1	1	213	220	13.1641
.))))((	chr16:85392842-85393087(+)$1	1	154	161	12.8656
)))))).	chr22:50016817-50017059(-)$1	1	89	96	13.0149
(.(((((	chr19:2227161-2227486(+)$1	1	11	18	16.9701
)))))))	chr11:63884767-63885020(-)$1	1	216	223	16.9701
((((...	chr7:127670519-127670770(+)$1	1	44	51	13.5373
..((((.	chr6:3259135-3259452(+)$1	1	77	84	12.3432
(.(((((	chr8:144672119-144672367(-)$1	1	179	186	13.1641
)...)))	chr1:36788436-36788683(+)$1	1	103	110	12.8656
(((.(((	chr3:195622185-195622431(-)$1	1	150	157	16.9701
....)))	chr13:114144719-114145012(-)$1	1	35	42	13.0895
(.((...	chr16:50342178-50342532(+)$1	1	19	26	12.8656
(.(((..	chr17:7476604-7476859(+)$1	1	144	151	12.6417
((((..(	chr17:76116795-76117065(-)$1	1	58	65	13.1641
(.((((.	chr17:79680152-79680406(+)$1	1	1	8	12.7910
))))...	chr16:4393860-4394173(-)$1	1	51	58	12.7164
..)))))	chr19:58990962-58991210(-)$1	1	35	42	16.9701
)))))).	chr19:11201097-11201428(+)$1	1	181	188	13.0149
)))).))	chr4:151504840-151505109(-)$1	1	175	182	12.6417
(...)))	chr20:57581853-57582178(-)$1	1	174	181	16.9701
((..(((	chr19:863083-863375(+)$1	1	18	25	13.5373
(((((((	chr19:1416330-1416606(+)$1	1	208	215	12.8656
..))))(	chr19:46184811-46185130(+)$1	1	99	106	12.7910

#PSSM
G : 0.86	C : 0.05	A : 0.05	g : 0.01	
A : 0.82	G : 0.13	U : 0.04	
G : 0.91	U : 0.04	g : 0.01	A : 0.01	C : 0.01	
G : 0.86	C : 0.04	A : 0.04	U : 0.02	g : 0.01	
C : 0.94	A : 0.02	U : 0.01	c : 0.01	
C : 0.89	G : 0.04	A : 0.02	U : 0.01	g : 0.01	
C : 0.82	G : 0.07	U : 0.04	A : 0.04	c : 0.01	

#score	919.2388059701506
#seq	67
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_CDS_m1_run2.nuc.txt

#NT
GGC	chr11:62286613-62286900(-)$1	287	17	20	9.0000
GGC	chr8:30669820-30670092(-)$1	272	12	15	9.0000
GGC	chr16:88714409-88714793(-)$1	384	0	3	9.0000
GGC	chr3:186506812-186507021(+)$1	209	105	108	9.0000
GGC	chr11:62285348-62285634(-)$1	286	22	25	9.0000
GGC	chr11:62293886-62294111(-)$1	225	5	8	9.0000
GGC	chr11:82879789-82880150(+)$1	361	10	13	9.0000
GGC	chr19:10406896-10407146(+)$1	250	21	24	9.0000
GGC	chr1:36348901-36349184(+)$1	283	0	3	9.0000
ggc	chr21:35445786-35446180(+)$1	394	4	7	9.0000
GGC	chr4:78740022-78740331(-)$1	309	3	6	9.0000
GGC	chr11:62284137-62284395(-)$1	258	42	45	9.0000
GGC	chr11:62284743-62284981(-)$1	238	0	3	9.0000
GGC	chr17:80789514-80789840(+)$1	326	19	22	9.0000
GGC	chr22:19431809-19432073(-)$1	264	54	57	9.0000
GGC	chr11:62284959-62285221(-)$1	262	4	7	9.0000
GGC	chr11:18425199-18425454(+)$1	255	178	181	9.0000
GGC	chr9:126691945-126692268(-)$1	323	9	12	9.0000
GGC	chr11:62286755-62287007(-)$1	252	18	21	9.0000
GGC	chr11:419624-419919(-)$1	295	18	21	9.0000
GGC	chr12:132414114-132414442(+)$1	328	4	7	9.0000
GGC	chr19:10407012-10407356(+)$1	344	8	11	9.0000
GGC	chr12:132402893-132403188(+)$1	295	43	46	9.0000
GGC	chr16:89970498-89970759(+)$1	261	60	63	9.0000
GGC	chr11:62285819-62286078(-)$1	259	13	16	9.0000
GGC	chr7:44156722-44157038(-)$1	316	1	4	9.0000
GGC	chr11:294166-294395(+)$1	229	0	3	9.0000
GGC	chr17:7476917-7477196(+)$1	279	52	55	9.0000
GGC	chr11:62297251-62297525(-)$1	274	101	104	9.0000
GGC	chr9:140081929-140082236(-)$1	307	6	9	9.0000
ggc	chr2:54197715-54197990(-)$1	275	19	22	9.0000
GGC	chr17:80789372-80789673(+)$1	301	11	14	9.0000
GGC	chr7:127669214-127669508(+)$1	294	25	28	9.0000
GGC	chr22:19838613-19838881(-)$1	268	146	149	9.0000
GGC	chr20:35491638-35491911(-)$1	273	6	9	9.0000
GGC	chrX:41193773-41194056(+)$1	283	1	4	9.0000
GGC	chr1:171750759-171751188(+)$1	429	7	10	9.0000
ggc	chr7:151216370-151216699(-)$1	329	18	21	9.0000
GGC	chrX:151123278-151123648(-)$1	370	27	30	9.0000
GGC	chr11:62286163-62286435(-)$1	272	27	30	9.0000
GGC	chr6:86322450-86322733(-)$1	283	3	6	9.0000
GGC	chr7:127669706-127670025(+)$1	319	5	8	9.0000
GGC	chr5:138629678-138629996(+)$1	318	7	10	9.0000
GGC	chr11:294551-294813(+)$1	262	29	32	9.0000
GGC	chr8:145749682-145749982(+)$1	300	13	16	9.0000
GGC	chr19:2270478-2270739(+)$1	261	4	7	9.0000
GGC	chr2:178082332-178082600(+)$1	268	102	105	9.0000
GGC	chr6:31730659-31730979(+)$1	320	64	67	9.0000
GGC	chr21:45562968-45563225(+)$1	257	8	11	9.0000
GGC	chr22:45724171-45724448(+)$1	277	24	27	9.0000
GGC	chr11:62286041-62286294(-)$1	253	129	132	9.0000
GGC	chr6:28872016-28872413(-)$1	397	31	34	9.0000
GGC	chr22:50016987-50017311(-)$1	324	11	14	9.0000
GGC	chr22:45723821-45724044(+)$1	223	21	24	9.0000
GGC	chr11:62300130-62300439(-)$1	309	141	144	9.0000
GGC	chr12:54676761-54676964(+)$1	203	23	26	9.0000
GGC	chr19:1428728-1429031(+)$1	303	214	217	9.0000
GGC	chrM:14226-14448(-)$1	222	13	16	9.0000
GGC	chr20:37400213-37400568(+)$1	355	41	44	9.0000
GGC	chr7:127669475-127669780(+)$1	305	26	29	9.0000
GGC	chr8:145693794-145694067(+)$1	273	5	8	9.0000
GGC	chr2:178081487-178081730(+)$1	243	15	18	9.0000
GGC	chr11:62284591-62284841(-)$1	250	16	19	9.0000
GGC	chr9:94711908-94712256(-)$1	348	8	11	9.0000
GGC	chr17:47841168-47841485(-)$1	317	10	13	9.0000
GGC	chr21:47731344-47731655(-)$1	311	162	165	9.0000
GGC	chr9:140260656-140261004(-)$1	348	34	37	9.0000
GGC	chr16:31201503-31201720(+)$1	217	19	22	9.0000
GGC	chr10:103546031-103546355(-)$1	324	10	13	9.0000
GGC	chr18:12329430-12329840(-)$1	410	118	121	9.0000
GGC	chr22:50873206-50873495(+)$1	289	3	6	9.0000
GGC	chr19:41306991-41307298(+)$1	307	16	19	9.0000
GGC	chr13:114144754-114145075(-)$1	321	3	6	9.0000
GGC	chr3:49050189-49050477(+)$1	288	7	10	9.0000
GGC	chr22:19431683-19432009(-)$1	326	119	122	9.0000
GGC	chrM:14198-14404(-)$1	206	158	161	9.0000
GGC	chr12:111180378-111180616(-)$1	238	26	29	9.0000
ggc	chr16:31196340-31196602(+)$1	262	5	8	9.0000
ggc	chr9:101558485-101558795(-)$1	310	2	5	9.0000
GGC	chr16:725962-726262(+)$1	300	47	50	9.0000
GGC	chr19:2270419-2270678(+)$1	259	26	29	9.0000
GGC	chr17:80231148-80231435(-)$1	287	12	15	9.0000
GGC	chr5:179248427-179248714(+)$1	287	30	33	9.0000
GGC	chr22:19711795-19712083(+)$1	288	0	3	9.0000
GGC	chr2:132044786-132045039(+)$1	253	57	60	9.0000
GGC	chr1:155658019-155658304(-)$1	285	31	34	9.0000
GGC	chr19:10406946-10407212(+)$1	266	9	12	9.0000
GGC	chr16:31201529-31201783(+)$1	254	74	77	9.0000
GGC	chr19:798414-798725(+)$1	311	83	86	9.0000
GGC	chr11:18424452-18424660(+)$1	208	45	48	9.0000
GGC	chr4:76649854-76650118(+)$1	264	0	3	9.0000
GGC	chr16:89367077-89367339(-)$1	262	31	34	9.0000
GGC	chr17:45757785-45758004(+)$1	219	24	27	9.0000
GGC	chr19:10222193-10222511(+)$1	318	38	41	9.0000
GGC	chr20:32255803-32256090(-)$1	287	97	100	9.0000
GGC	chr19:55558632-55558918(+)$1	286	4	7	9.0000
GGC	chr6:31732092-31732354(+)$1	262	29	32	9.0000
GGC	chr11:62300350-62300692(-)$1	342	31	34	9.0000
GGC	chr16:31044904-31045244(+)$1	340	49	52	9.0000

#otherMatches

#Struct PSSM
:CC	chr11:66392971-66393224(+)$1	253	8	11	9.0000
eee	chr11:62286613-62286900(-)$1	287	17	20	9.0000
!!c	chr8:30669820-30670092(-)$1	272	12	15	9.0000
ddd	chr16:88714409-88714793(-)$1	384	0	3	9.0000
hhh	chr3:186506812-186507021(+)$1	209	105	108	9.0000
CKK	chr11:62285348-62285634(-)$1	286	22	25	9.0000
DDD	chr11:62293886-62294111(-)$1	225	5	8	9.0000
FFF	chr11:82879789-82880150(+)$1	361	10	13	9.0000
===	chr19:10406896-10407146(+)$1	250	21	24	9.0000
hhh	chr1:36348901-36349184(+)$1	283	0	3	9.0000
EEE	chr21:35445786-35446180(+)$1	394	4	7	9.0000
bb!	chr4:78740022-78740331(-)$1	309	3	6	9.0000
DDD	chr11:62284137-62284395(-)$1	258	42	45	9.0000
CCC	chr11:62284743-62284981(-)$1	238	0	3	9.0000
ddd	chr17:80789514-80789840(+)$1	326	19	22	9.0000
ddd	chr22:19431809-19432073(-)$1	264	54	57	9.0000
ggg	chr11:62284959-62285221(-)$1	262	4	7	9.0000
2bb	chr11:18425199-18425454(+)$1	255	178	181	9.0000
{CC	chr9:126691945-126692268(-)$1	323	9	12	9.0000
FFF	chr11:62286755-62287007(-)$1	252	18	21	9.0000
ggg	chr11:419624-419919(-)$1	295	18	21	9.0000
EE:	chr12:132414114-132414442(+)$1	328	4	7	9.0000
BMM	chr19:10407012-10407356(+)$1	344	8	11	9.0000
EEE	chr12:132402893-132403188(+)$1	295	43	46	9.0000
CCC	chr16:89970498-89970759(+)$1	261	60	63	9.0000
FFF	chr11:62285819-62286078(-)$1	259	13	16	9.0000
:CC	chr7:44156722-44157038(-)$1	316	1	4	9.0000
:DD	chr11:294166-294395(+)$1	229	0	3	9.0000
ggg	chr17:7476917-7477196(+)$1	279	52	55	9.0000
xxx	chr11:62297251-62297525(-)$1	274	101	104	9.0000
:dd	chr9:140081929-140082236(-)$1	307	6	9	9.0000
B{D	chr2:54197715-54197990(-)$1	275	19	22	9.0000
KKB	chr17:80789372-80789673(+)$1	301	11	14	9.0000
dee	chr7:127669214-127669508(+)$1	294	25	28	9.0000
###	chr22:19838613-19838881(-)$1	268	146	149	9.0000
GGG	chr20:35491638-35491911(-)$1	273	6	9	9.0000
:bb	chrX:41193773-41194056(+)$1	283	1	4	9.0000
EEE	chr1:171750759-171751188(+)$1	429	7	10	9.0000
FFF	chr7:151216370-151216699(-)$1	329	18	21	9.0000
fff	chrX:151123278-151123648(-)$1	370	27	30	9.0000
cca	chr11:62286163-62286435(-)$1	272	27	30	9.0000
EEE	chr6:86322450-86322733(-)$1	283	3	6	9.0000
ccc	chr7:127669706-127670025(+)$1	319	5	8	9.0000
EEE	chr5:138629678-138629996(+)$1	318	7	10	9.0000
FFK	chr11:294551-294813(+)$1	262	29	32	9.0000
GGG	chr8:145749682-145749982(+)$1	300	13	16	9.0000
b[e	chr19:2270478-2270739(+)$1	261	4	7	9.0000
cca	chr2:178082332-178082600(+)$1	268	102	105	9.0000
eee	chr6:31730659-31730979(+)$1	320	64	67	9.0000
FFF	chr21:45562968-45563225(+)$1	257	8	11	9.0000
CCC	chr22:45724171-45724448(+)$1	277	24	27	9.0000
bbm	chr11:62286041-62286294(-)$1	253	129	132	9.0000
enn	chr6:28872016-28872413(-)$1	397	31	34	9.0000
ggg	chr22:50016987-50017311(-)$1	324	11	14	9.0000
GGG	chr22:45723821-45724044(+)$1	223	21	24	9.0000
C::	chr11:62300130-62300439(-)$1	309	141	144	9.0000
:ff	chr12:54676761-54676964(+)$1	203	23	26	9.0000
ccc	chr19:1428728-1429031(+)$1	303	214	217	9.0000
A{B	chrM:14226-14448(-)$1	222	13	16	9.0000
d##	chr20:37400213-37400568(+)$1	355	41	44	9.0000
DDD	chr7:127669475-127669780(+)$1	305	26	29	9.0000
:FF	chr8:145693794-145694067(+)$1	273	5	8	9.0000
:ff	chr2:178081487-178081730(+)$1	243	15	18	9.0000
$$h	chr11:62284591-62284841(-)$1	250	16	19	9.0000
EE{	chr9:94711908-94712256(-)$1	348	8	11	9.0000
!!b	chr17:47841168-47841485(-)$1	317	10	13	9.0000
hhh	chr21:47731344-47731655(-)$1	311	162	165	9.0000
b[e	chr9:140260656-140261004(-)$1	348	34	37	9.0000
BB{	chr16:31201503-31201720(+)$1	217	19	22	9.0000
cee	chr10:103546031-103546355(-)$1	324	10	13	9.0000
JJJ	chr18:12329430-12329840(-)$1	410	118	121	9.0000
{FF	chr22:50873206-50873495(+)$1	289	3	6	9.0000
HHH	chr19:41306991-41307298(+)$1	307	16	19	9.0000
ccc	chr13:114144754-114145075(-)$1	321	3	6	9.0000
:CC	chr3:49050189-49050477(+)$1	288	7	10	9.0000
bbc	chr22:19431683-19432009(-)$1	326	119	122	9.0000
55g	chrM:14198-14404(-)$1	206	158	161	9.0000
HHH	chr12:111180378-111180616(-)$1	238	26	29	9.0000
[bb	chr16:31196340-31196602(+)$1	262	5	8	9.0000
{GG	chr9:101558485-101558795(-)$1	310	2	5	9.0000
nnn	chr16:725962-726262(+)$1	300	47	50	9.0000
CCC	chr19:2270419-2270678(+)$1	259	26	29	9.0000
ccc	chr17:80231148-80231435(-)$1	287	12	15	9.0000
DDD	chr5:179248427-179248714(+)$1	287	30	33	9.0000
ggg	chr22:19711795-19712083(+)$1	288	0	3	9.0000
ddd	chr2:132044786-132045039(+)$1	253	57	60	9.0000
ooo	chr1:155658019-155658304(-)$1	285	31	34	9.0000
hhh	chr19:10406946-10407212(+)$1	266	9	12	9.0000
f[b	chr16:31201529-31201783(+)$1	254	74	77	9.0000
bb!	chr19:798414-798725(+)$1	311	83	86	9.0000
eee	chr11:18424452-18424660(+)$1	208	45	48	9.0000
:dd	chr4:76649854-76650118(+)$1	264	0	3	9.0000
FF{	chr16:89367077-89367339(-)$1	262	31	34	9.0000
eee	chr17:45757785-45758004(+)$1	219	24	27	9.0000
ccc	chr19:10222193-10222511(+)$1	318	38	41	9.0000
[cc	chr20:32255803-32256090(-)$1	287	97	100	9.0000
:bb	chr19:55558632-55558918(+)$1	286	4	7	9.0000
DDD	chr6:31732092-31732354(+)$1	262	29	32	9.0000
c]g	chr11:62300350-62300692(-)$1	342	31	34	9.0000
:ee	chr16:31044904-31045244(+)$1	340	49	52	9.0000

#DB
.((	chr11:66392971-66393224(+)$1	1	8	11	9.0000
(((	chr11:62286613-62286900(-)$1	1	17	20	9.0000
..(	chr8:30669820-30670092(-)$1	1	12	15	9.0000
(((	chr16:88714409-88714793(-)$1	1	0	3	9.0000
(((	chr3:186506812-186507021(+)$1	1	105	108	9.0000
(..	chr11:62285348-62285634(-)$1	1	22	25	9.0000
(((	chr11:62293886-62294111(-)$1	1	5	8	9.0000
(((	chr11:82879789-82880150(+)$1	1	10	13	9.0000
(((	chr19:10406896-10407146(+)$1	1	21	24	9.0000
(((	chr1:36348901-36349184(+)$1	1	0	3	9.0000
(((	chr21:35445786-35446180(+)$1	1	4	7	9.0000
((.	chr4:78740022-78740331(-)$1	1	3	6	9.0000
(((	chr11:62284137-62284395(-)$1	1	42	45	9.0000
(((	chr11:62284743-62284981(-)$1	1	0	3	9.0000
)))	chr17:80789514-80789840(+)$1	1	19	22	9.0000
(((	chr22:19431809-19432073(-)$1	1	54	57	9.0000
(((	chr11:62284959-62285221(-)$1	1	4	7	9.0000
.))	chr11:18425199-18425454(+)$1	1	178	181	9.0000
.((	chr9:126691945-126692268(-)$1	1	9	12	9.0000
(((	chr11:62286755-62287007(-)$1	1	18	21	9.0000
(((	chr11:419624-419919(-)$1	1	18	21	9.0000
((.	chr12:132414114-132414442(+)$1	1	4	7	9.0000
(..	chr19:10407012-10407356(+)$1	1	8	11	9.0000
(((	chr12:132402893-132403188(+)$1	1	43	46	9.0000
(((	chr16:89970498-89970759(+)$1	1	60	63	9.0000
(((	chr11:62285819-62286078(-)$1	1	13	16	9.0000
.((	chr7:44156722-44157038(-)$1	1	1	4	9.0000
.((	chr11:294166-294395(+)$1	1	0	3	9.0000
)))	chr17:7476917-7477196(+)$1	1	52	55	9.0000
...	chr11:62297251-62297525(-)$1	1	101	104	9.0000
.((	chr9:140081929-140082236(-)$1	1	6	9	9.0000
(.(	chr2:54197715-54197990(-)$1	1	19	22	9.0000
..(	chr17:80789372-80789673(+)$1	1	11	14	9.0000
)((	chr7:127669214-127669508(+)$1	1	25	28	9.0000
...	chr22:19838613-19838881(-)$1	1	146	149	9.0000
(((	chr20:35491638-35491911(-)$1	1	6	9	9.0000
.((	chrX:41193773-41194056(+)$1	1	1	4	9.0000
(((	chr1:171750759-171751188(+)$1	1	7	10	9.0000
(((	chr7:151216370-151216699(-)$1	1	18	21	9.0000
)))	chrX:151123278-151123648(-)$1	1	27	30	9.0000
)))	chr11:62286163-62286435(-)$1	1	27	30	9.0000
(((	chr6:86322450-86322733(-)$1	1	3	6	9.0000
(((	chr7:127669706-127670025(+)$1	1	5	8	9.0000
(((	chr5:138629678-138629996(+)$1	1	7	10	9.0000
((.	chr11:294551-294813(+)$1	1	29	32	9.0000
(((	chr8:145749682-145749982(+)$1	1	13	16	9.0000
(.(	chr19:2270478-2270739(+)$1	1	4	7	9.0000
(((	chr2:178082332-178082600(+)$1	1	102	105	9.0000
(((	chr6:31730659-31730979(+)$1	1	64	67	9.0000
(((	chr21:45562968-45563225(+)$1	1	8	11	9.0000
(((	chr22:45724171-45724448(+)$1	1	24	27	9.0000
((.	chr11:62286041-62286294(-)$1	1	129	132	9.0000
(..	chr6:28872016-28872413(-)$1	1	31	34	9.0000
(((	chr22:50016987-50017311(-)$1	1	11	14	9.0000
(((	chr22:45723821-45724044(+)$1	1	21	24	9.0000
(..	chr11:62300130-62300439(-)$1	1	141	144	9.0000
.((	chr12:54676761-54676964(+)$1	1	23	26	9.0000
)))	chr19:1428728-1429031(+)$1	1	214	217	9.0000
(.(	chrM:14226-14448(-)$1	1	13	16	9.0000
(..	chr20:37400213-37400568(+)$1	1	41	44	9.0000
(((	chr7:127669475-127669780(+)$1	1	26	29	9.0000
.((	chr8:145693794-145694067(+)$1	1	5	8	9.0000
.((	chr2:178081487-178081730(+)$1	1	15	18	9.0000
..(	chr11:62284591-62284841(-)$1	1	16	19	9.0000
((.	chr9:94711908-94712256(-)$1	1	8	11	9.0000
..(	chr17:47841168-47841485(-)$1	1	10	13	9.0000
)))	chr21:47731344-47731655(-)$1	1	162	165	9.0000
(.(	chr9:140260656-140261004(-)$1	1	34	37	9.0000
((.	chr16:31201503-31201720(+)$1	1	19	22	9.0000
(((	chr10:103546031-103546355(-)$1	1	10	13	9.0000
(((	chr18:12329430-12329840(-)$1	1	118	121	9.0000
.((	chr22:50873206-50873495(+)$1	1	3	6	9.0000
(((	chr19:41306991-41307298(+)$1	1	16	19	9.0000
(((	chr13:114144754-114145075(-)$1	1	3	6	9.0000
.((	chr3:49050189-49050477(+)$1	1	7	10	9.0000
)))	chr22:19431683-19432009(-)$1	1	119	122	9.0000
..)	chrM:14198-14404(-)$1	1	158	161	9.0000
(((	chr12:111180378-111180616(-)$1	1	26	29	9.0000
.((	chr16:31196340-31196602(+)$1	1	5	8	9.0000
.((	chr9:101558485-101558795(-)$1	1	2	5	9.0000
...	chr16:725962-726262(+)$1	1	47	50	9.0000
(((	chr19:2270419-2270678(+)$1	1	26	29	9.0000
)))	chr17:80231148-80231435(-)$1	1	12	15	9.0000
(((	chr5:179248427-179248714(+)$1	1	30	33	9.0000
(((	chr22:19711795-19712083(+)$1	1	0	3	9.0000
)))	chr2:132044786-132045039(+)$1	1	57	60	9.0000
...	chr1:155658019-155658304(-)$1	1	31	34	9.0000
(((	chr19:10406946-10407212(+)$1	1	9	12	9.0000
(.(	chr16:31201529-31201783(+)$1	1	74	77	9.0000
((.	chr19:798414-798725(+)$1	1	83	86	9.0000
)))	chr11:18424452-18424660(+)$1	1	45	48	9.0000
.((	chr4:76649854-76650118(+)$1	1	0	3	9.0000
((.	chr16:89367077-89367339(-)$1	1	31	34	9.0000
(((	chr17:45757785-45758004(+)$1	1	24	27	9.0000
)))	chr19:10222193-10222511(+)$1	1	38	41	9.0000
.((	chr20:32255803-32256090(-)$1	1	97	100	9.0000
.((	chr19:55558632-55558918(+)$1	1	4	7	9.0000
(((	chr6:31732092-31732354(+)$1	1	29	32	9.0000
).)	chr11:62300350-62300692(-)$1	1	31	34	9.0000
.((	chr16:31044904-31045244(+)$1	1	49	52	9.0000

#PSSM
G : 0.95	g : 0.05	
G : 0.95	g : 0.05	
C : 0.95	c : 0.05	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_UTR_m3_run2.nuc.txt

#NT
AUCUUUUU	chr9:91931284-91931541(+)$1	257	77	85	16.0769
CUUUUUUU	chr1:6160938-6161207(+)$1	269	152	160	16.9230
AUUUUUAU	chr3:5261340-5261592(+)$1	252	6	14	15.9230
AUUUUUUU	chr20:36720562-36720818(+)$1	256	213	221	20.3846
AUCUUUUU	chr9:95059715-95060006(-)$1	291	33	41	16.0769
AUUUAUUU	chr6:159054929-159055163(+)$1	234	223	231	16.2307
AUUCUUUU	chr2:111924492-111924773(+)$1	281	117	125	15.8461
AUCUUUUU	chr10:857222-857481(-)$1	259	114	122	16.0769
AUUUUUGU	chr9:72999438-72999697(-)$1	259	37	45	16.0769
AUUUUUUU	chr3:5222202-5222450(+)$1	248	147	155	20.3846
AUUUUUUA	chr8:110254698-110254997(-)$1	299	11	19	15.9999
AUUUUUUU	chr4:77957867-77958139(+)$1	272	197	205	20.3846
AUUUUUUU	chr4:39780185-39780427(+)$1	242	82	90	20.3846
AUUUUUUU	chr5:10434328-10434571(+)$1	243	83	91	20.3846
ACUUUUUU	chr8:68107878-68108149(+)$1	271	48	56	15.7692
AUUUUUUU	chr11:105967966-105968283(+)$1	317	56	64	20.3846
AUUUUAUU	chr20:49368949-49369273(+)$1	324	112	120	16.1538
AUUUUUUA	chr6:161536111-161536372(+)$1	261	19	27	15.9999
cuuuuuuu	chr12:123779171-123779437(-)$1	266	220	228	16.9230
AUUUCUUU	chr3:176738686-176738950(-)$1	264	65	73	16.1538
AUUUUUUU	chr10:28909118-28909367(+)$1	249	25	33	20.3846
AUUUUUGU	chr4:78641344-78641649(-)$1	305	208	216	16.0769
CUUUUUUU	chr14:50050243-50050495(-)$1	252	32	40	16.9230
AUUGUUUU	chr10:5498858-5499105(+)$1	247	214	222	15.7692
AUUUUUCU	chr12:63038222-63038440(-)$1	218	134	142	15.9999
auuuuAUU	chr17:57187276-57187510(-)$1	234	90	98	16.1538
AUUUUUGU	chr4:7033962-7034232(+)$1	270	52	60	16.0769
AUUUCUUU	chr12:19529037-19529365(+)$1	328	254	262	16.1538
AUUCUUUU	chr1:10441432-10441691(+)$1	259	104	112	15.8461
AUUUUCUU	chr8:68110089-68110351(-)$1	262	99	107	15.9999
AUUUUUUU	chr1:160398149-160398412(+)$1	263	89	97	20.3846
CUUUUUUU	chr18:9861651-9861958(+)$1	307	93	101	16.9230
AUCUUUUU	chr3:5261392-5261664(+)$1	272	136	144	16.0769
AUUUUUUU	chr1:51822121-51822377(-)$1	256	145	153	20.3846
AUUUUAUU	chr20:60550459-60550683(-)$1	224	129	137	16.1538
AUUUAUUU	chr19:18307916-18308193(-)$1	277	55	63	16.2307
AUUUUUCU	chr20:35405779-35406050(-)$1	271	230	238	15.9999
GUUUUUUU	chr16:31202777-31203022(+)$1	245	77	85	16.3846
CUUUUUUU	chr3:179052245-179052493(+)$1	248	13	21	16.9230
CUUUUUUU	chr11:33730710-33730971(-)$1	261	0	8	16.9230
AUUAUUUU	chr10:69677852-69678097(+)$1	245	94	102	15.7692
Auuuuuuu	chr15:29992714-29992974(-)$1	260	10	18	20.3846
AUUUAUUU	chr1:231701584-231701858(+)$1	274	32	40	16.2307
Auuuuuuu	chr2:47387782-47388043(-)$1	261	29	37	20.3846
AUUUUUUG	chr12:122269449-122269670(+)$1	221	50	58	15.8461
AUUUUUUU	chr11:63527155-63527433(+)$1	278	35	43	20.3846
AUAUUUUU	chr5:36099422-36099690(-)$1	268	130	138	15.8461
AUUUUUUU	chr2:55517254-55517552(-)$1	298	68	76	20.3846
cuuuuuuu	chr1:161326492-161326731(+)$1	239	229	237	16.9230
AUUUUUUU	chr14:70238281-70238518(+)$1	237	188	196	20.3846
ACUUUUUU	chr5:68473340-68473616(+)$1	276	226	234	15.7692
AUUUAUUU	chr13:42896818-42897092(+)$1	274	82	90	16.2307
CUUUUUUU	chr12:110970979-110971264(-)$1	285	61	69	16.9230
AUUUUCUU	chr2:37326120-37326373(+)$1	253	163	171	15.9999
AUUUUUUU	chr3:193415106-193415350(+)$1	244	98	106	20.3846
AUUUCUUU	chr2:131907100-131907384(+)$1	284	116	124	16.1538
auuuuauu	chr2:75118853-75119135(+)$1	282	14	22	16.1538
aauuuuuu	chr19:811928-812167(+)$1	239	97	105	15.6923
Cuuuuuuu	chr3:63988802-63989177(+)$1	375	78	86	16.9230
guuuuuuu	chr3:120048277-120048567(-)$1	290	81	89	16.3846
AUUUUUUU	chr18:23971403-23971719(+)$1	316	25	33	20.3846
AUUUUUUU	chr5:78982092-78982379(+)$1	287	243	251	20.3846
auuuuuuu	chr1:29474189-29474430(-)$1	241	84	92	20.3846
AUUUUUUC	chr14:34985310-34985616(-)$1	306	69	77	15.8461

#otherMatches

#Struct PSSM
b9999999	chrX:70279095-70279342(-)$1	247	75	83	15.9999
::::::::	chr9:91931284-91931541(+)$1	257	77	85	16.0769
GGG:::::	chr1:6160938-6161207(+)$1	269	152	160	16.9230
dvvvvvvv	chr3:5261340-5261592(+)$1	252	6	14	15.9230
::::::::	chr20:36720562-36720818(+)$1	256	213	221	20.3846
d::::DDD	chr9:95059715-95060006(-)$1	291	33	41	16.0769
eeee:EEE	chr6:159054929-159055163(+)$1	234	223	231	16.2307
e(((((((	chr2:111924492-111924773(+)$1	281	117	125	15.8461
ggggggEE	chr10:857222-857481(-)$1	259	114	122	16.0769
::::::::	chr9:72999438-72999697(-)$1	259	37	45	16.0769
eeoooooo	chr3:5222202-5222450(+)$1	248	147	155	20.3846
G{CCC:gg	chr8:110254698-110254997(-)$1	299	11	19	15.9999
dddd]hhh	chr4:77957867-77958139(+)$1	272	197	205	20.3846
SSSSSSSS	chr4:39780185-39780427(+)$1	242	82	90	20.3846
::::::::	chr5:10434328-10434571(+)$1	243	83	91	20.3846
::::::::	chr8:68107878-68108149(+)$1	271	48	56	15.7692
::::ccc!	chr11:105967966-105968283(+)$1	317	56	64	20.3846
2eeeeedd	chr20:49368949-49369273(+)$1	324	112	120	16.1538
d[======	chr6:161536111-161536372(+)$1	261	19	27	15.9999
::::::::	chr12:123779171-123779437(-)$1	266	220	228	16.9230
eeee8888	chr3:176738686-176738950(-)$1	264	65	73	16.1538
33dddd22	chr10:28909118-28909367(+)$1	249	25	33	20.3846
fmmmmfff	chr4:78641344-78641649(-)$1	305	208	216	16.0769
::::::::	chr14:50050243-50050495(-)$1	252	32	40	16.9230
::IIIIII	chr10:5498858-5499105(+)$1	247	214	222	15.7692
"""ccc!!	chr12:63038222-63038440(-)$1	218	134	142	15.9999
========	chr17:57187276-57187510(-)$1	234	90	98	16.1538
hhhhhhh'	chr4:7033962-7034232(+)$1	270	52	60	16.0769
EEEEYYFF	chr12:19529037-19529365(+)$1	328	254	262	16.1538
FF{A{BB{	chr1:10441432-10441691(+)$1	259	104	112	15.8461
ggggg777	chr8:68110089-68110351(-)$1	262	99	107	15.9999
dddd7777	chr1:160398149-160398412(+)$1	263	89	97	20.3846
::::::::	chr18:9861651-9861958(+)$1	307	93	101	16.9230
JJJJJJ==	chr3:5261392-5261664(+)$1	272	136	144	16.0769
e]dddd::	chr1:51822121-51822377(-)$1	256	145	153	20.3846
cppppppp	chr20:60550459-60550683(-)$1	224	129	137	16.1538
::::::::	chr19:18307916-18308193(-)$1	277	55	63	16.2307
bmmmmbb4	chr20:35405779-35406050(-)$1	271	230	238	15.9999
cc::::::	chr16:31202777-31203022(+)$1	245	77	85	16.3846
bboooooo	chr3:179052245-179052493(+)$1	248	13	21	16.9230
::::::::	chr11:33730710-33730971(-)$1	261	0	8	16.9230
ggggggge	chr10:69677852-69678097(+)$1	245	94	102	15.7692
qqqqqqqc	chr15:29992714-29992974(-)$1	260	10	18	20.3846
e"""====	chr1:231701584-231701858(+)$1	274	32	40	16.2307
d^^^^^^^	chr2:47387782-47388043(-)$1	261	29	37	20.3846
$$$$$eee	chr12:122269449-122269670(+)$1	221	50	58	15.8461
[hhhhhhh	chr11:63527155-63527433(+)$1	278	35	43	20.3846
JJJJJJJJ	chr5:36099422-36099690(-)$1	268	130	138	15.8461
ELLLFFFF	chr2:55517254-55517552(-)$1	298	68	76	20.3846
::::::::	chr1:161326492-161326731(+)$1	239	229	237	16.9230
iiiiiiii	chr14:70238281-70238518(+)$1	237	188	196	20.3846
GGGGGGII	chr5:68473340-68473616(+)$1	276	226	234	15.7692
++++++++	chr13:42896818-42897092(+)$1	274	82	90	16.2307
hhhhhh%%	chr12:110970979-110971264(-)$1	285	61	69	16.9230
eeennnnn	chr2:37326120-37326373(+)$1	253	163	171	15.9999
::::::::	chr3:193415106-193415350(+)$1	244	98	106	20.3846
::::::::	chr2:131907100-131907384(+)$1	284	116	124	16.1538
::::::::	chr2:75118853-75119135(+)$1	282	14	22	16.1538
uuuuuiii	chr19:811928-812167(+)$1	239	97	105	15.6923
ggggg:::	chr3:63988802-63989177(+)$1	375	78	86	16.9230
D{CCC{CC	chr3:120048277-120048567(-)$1	290	81	89	16.3846
cqqqqqqq	chr18:23971403-23971719(+)$1	316	25	33	20.3846
ddIIIIII	chr5:78982092-78982379(+)$1	287	243	251	20.3846
fffooooo	chr1:29474189-29474430(-)$1	241	84	92	20.3846
hhhhh555	chr14:34985310-34985616(-)$1	306	69	77	15.8461

#DB
).......	chrX:70279095-70279342(-)$1	1	75	83	15.9999
........	chr9:91931284-91931541(+)$1	1	77	85	16.0769
(((.....	chr1:6160938-6161207(+)$1	1	152	160	16.9230
(.......	chr3:5261340-5261592(+)$1	1	6	14	15.9230
........	chr20:36720562-36720818(+)$1	1	213	221	20.3846
)....(((	chr9:95059715-95060006(-)$1	1	33	41	16.0769
)))).)))	chr6:159054929-159055163(+)$1	1	223	231	16.2307
(.......	chr2:111924492-111924773(+)$1	1	117	125	15.8461
))))))((	chr10:857222-857481(-)$1	1	114	122	16.0769
........	chr9:72999438-72999697(-)$1	1	37	45	16.0769
((......	chr3:5222202-5222450(+)$1	1	147	155	20.3846
(.(((.((	chr8:110254698-110254997(-)$1	1	11	19	15.9999
)))).)))	chr4:77957867-77958139(+)$1	1	197	205	20.3846
........	chr4:39780185-39780427(+)$1	1	82	90	20.3846
........	chr5:10434328-10434571(+)$1	1	83	91	20.3846
........	chr8:68107878-68108149(+)$1	1	48	56	15.7692
....(((.	chr11:105967966-105968283(+)$1	1	56	64	20.3846
.)))))))	chr20:49368949-49369273(+)$1	1	112	120	16.1538
(.((((((	chr6:161536111-161536372(+)$1	1	19	27	15.9999
........	chr12:123779171-123779437(-)$1	1	220	228	16.9230
))))....	chr3:176738686-176738950(-)$1	1	65	73	16.1538
..))))..	chr10:28909118-28909367(+)$1	1	25	33	20.3846
(....)))	chr4:78641344-78641649(-)$1	1	208	216	16.0769
........	chr14:50050243-50050495(-)$1	1	32	40	16.9230
..))))))	chr10:5498858-5499105(+)$1	1	214	222	15.7692
...(((..	chr12:63038222-63038440(-)$1	1	134	142	15.9999
))))))))	chr17:57187276-57187510(-)$1	1	90	98	16.1538
(((((((.	chr4:7033962-7034232(+)$1	1	52	60	16.0769
))))..))	chr12:19529037-19529365(+)$1	1	254	262	16.1538
((.(.((.	chr1:10441432-10441691(+)$1	1	104	112	15.8461
)))))...	chr8:68110089-68110351(-)$1	1	99	107	15.9999
))))....	chr1:160398149-160398412(+)$1	1	89	97	20.3846
........	chr18:9861651-9861958(+)$1	1	93	101	16.9230
((((((((	chr3:5261392-5261664(+)$1	1	136	144	16.0769
).))))..	chr1:51822121-51822377(-)$1	1	145	153	20.3846
(.......	chr20:60550459-60550683(-)$1	1	129	137	16.1538
........	chr19:18307916-18308193(-)$1	1	55	63	16.2307
(....)).	chr20:35405779-35406050(-)$1	1	230	238	15.9999
))......	chr16:31202777-31203022(+)$1	1	77	85	16.3846
((......	chr3:179052245-179052493(+)$1	1	13	21	16.9230
........	chr11:33730710-33730971(-)$1	1	0	8	16.9230
)))))))(	chr10:69677852-69678097(+)$1	1	94	102	15.7692
.......)	chr15:29992714-29992974(-)$1	1	10	18	20.3846
(...((((	chr1:231701584-231701858(+)$1	1	32	40	16.2307
(.......	chr2:47387782-47388043(-)$1	1	29	37	20.3846
.....(((	chr12:122269449-122269670(+)$1	1	50	58	15.8461
.(((((((	chr11:63527155-63527433(+)$1	1	35	43	20.3846
((((((((	chr5:36099422-36099690(-)$1	1	130	138	15.8461
(...((((	chr2:55517254-55517552(-)$1	1	68	76	20.3846
........	chr1:161326492-161326731(+)$1	1	229	237	16.9230
((((((((	chr14:70238281-70238518(+)$1	1	188	196	20.3846
))))))))	chr5:68473340-68473616(+)$1	1	226	234	15.7692
........	chr13:42896818-42897092(+)$1	1	82	90	16.2307
((((((..	chr12:110970979-110971264(-)$1	1	61	69	16.9230
(((.....	chr2:37326120-37326373(+)$1	1	163	171	15.9999
........	chr3:193415106-193415350(+)$1	1	98	106	20.3846
........	chr2:131907100-131907384(+)$1	1	116	124	16.1538
........	chr2:75118853-75119135(+)$1	1	14	22	16.1538
.....)))	chr19:811928-812167(+)$1	1	97	105	15.6923
)))))...	chr3:63988802-63989177(+)$1	1	78	86	16.9230
(.(((.((	chr3:120048277-120048567(-)$1	1	81	89	16.3846
(.......	chr18:23971403-23971719(+)$1	1	25	33	20.3846
))))))))	chr5:78982092-78982379(+)$1	1	243	251	20.3846
(((.....	chr1:29474189-29474430(-)$1	1	84	92	20.3846
)))))...	chr14:34985310-34985616(-)$1	1	69	77	15.8461

#PSSM
A : 0.76	C : 0.10	a : 0.06	c : 0.03	G : 0.01	g : 0.01	
U : 0.81	u : 0.13	C : 0.03	a : 0.01	
U : 0.76	u : 0.15	C : 0.06	A : 0.01	
U : 0.78	u : 0.15	C : 0.03	G : 0.01	A : 0.01	
U : 0.73	u : 0.15	A : 0.06	C : 0.04	
U : 0.78	u : 0.12	A : 0.04	C : 0.03	a : 0.01	
U : 0.76	u : 0.13	G : 0.04	C : 0.03	A : 0.01	
U : 0.78	u : 0.13	A : 0.04	G : 0.01	C : 0.01	

#score	1128.4615384615377
#seq	65
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_UTR_m1_run2.nuc.txt

#NT
GGGGGCGGGGGGAGGAGCUG	chr2:230786502-230786762(-)$1	260	233	253	23.5087
aggcgcggggagggggcaga	chr15:64752846-64753092(+)$1	246	20	40	24.5614
aggggaggggagggcaaggc	chr2:191513645-191513915(+)$1	270	120	140	22.9824
ggggggcgggagggggcggc	chr20:361846-362083(+)$1	237	7	27	27.5438
GGGGGAGGCGUGGGGAAGGG	chr10:93667629-93668009(-)$1	380	89	109	25.5263
GGGAGUGGGGAGGGAGAGGG	chr7:100732772-100733054(+)$1	282	111	131	27.8070
GGCGGCCGCGAGGGGAGGGG	chr15:66084357-66084614(-)$1	257	49	69	23.3333
ggcggcgggaugggggccgg	chr21:45284974-45285230(+)$1	256	93	113	23.7719
CGGGGAGGGGCGGGCGGGGG	chr6:41748370-41748640(+)$1	270	26	46	27.4561
ggggccggggcggggaaggg	chr17:38278474-38278721(+)$1	247	1	21	27.8947
GUGCGCGGGGCGGGGGCCGG	chr19:41770630-41770884(+)$1	254	79	99	25.0000
aggggaggggaggggagggg	chr2:209118872-209119137(-)$1	265	86	106	29.7368
gggaggggggaggggggaca	chr10:120967075-120967360(+)$1	285	107	127	24.0350
GGGGCUGGGGAGGGGGUACC	chr11:61634357-61634655(+)$1	298	41	61	21.0526
gggggcgggggcgggcgcgg	chr2:32235525-32235782(-)$1	257	32	52	27.1929
CGAGGCGGGGAGGGGGCGGG	chr12:76477660-76477927(-)$1	267	106	126	29.1228
GGGGGUGGGGGUGGGGUUGA	chr1:150594855-150595155(-)$1	300	91	111	22.3684
GGGGGCGGGGUGGGGACGGG	chr3:41241461-41241750(+)$1	289	92	112	32.5438
GGGGGAGGGGACGGGGGUCG	chr1:201123382-201123648(-)$1	266	94	114	25.0877
CGGGGAGGGGAGGGGGCGUU	chr8:17658252-17658522(-)$1	270	46	66	23.9473
gggggguggguggggguUGC	chr17:37618164-37618425(+)$1	261	88	108	22.3684
GGAUGCGGGGAGGGCCCGGG	chr17:80192415-80192673(+)$1	258	107	127	25.1754
Cggggcggggagggagaggg	chr18:29077999-29078284(+)$1	285	90	110	29.4736
UGGGGCGGAGUGGGGGUGGA	chr9:38620154-38620433(-)$1	279	70	90	23.4210
CGGGGCGGGGCGGGGCUCCC	chr12:30907490-30907767(-)$1	277	202	222	21.0526
GGGAGUGGGGAGGGUCAGGU	chr17:38078009-38078323(-)$1	314	100	120	22.7192
ggugggggggaggggccgcg	chr15:64752892-64753142(+)$1	250	30	50	25.8771
guggggggggaggGUGGUAG	chr2:20550295-20550521(-)$1	226	23	43	21.6666
gguggcggggaaggggggcg	chr20:8112759-8113032(+)$1	273	75	95	26.1403
gggggcggggugcggagcgg	chr17:36955674-36955947(-)$1	273	43	63	27.1929
cggggcgggGAGGGCUGCCG	chr19:56166236-56166481(+)$1	245	73	93	24.1228
AGGGGCGGGGGGCGGGGCAG	chr16:30958910-30959176(+)$1	266	17	37	21.9298
gggggccgggggggccUGGG	chr6:32157584-32157846(-)$1	262	190	210	25.7894
GGGCGCGGGGAGAGGCCGGG	chr17:43238553-43238834(-)$1	281	34	54	27.6315
GCAGGCGGGGAGGGAGGCGG	chr2:230786612-230786875(-)$1	263	101	121	23.7719
UGUGUCGGGGAGGGCGGGGG	chr14:32546395-32546618(+)$1	223	56	76	22.8947
gggggcgggcggcggcgggc	chr18:8609577-8609890(+)$1	313	99	119	22.1052
GGGGGUGGGGAGGGGGGAAG	chr5:92920309-92920551(+)$1	242	16	36	29.2105
ggccgcggggcgggcgggcg	chr2:208576280-208576542(+)$1	262	162	182	23.1578
GGGAGUGGGGAGGGCUGGGG	chr4:763944-764202(-)$1	258	95	115	27.6315
GGGAGUGGGGCGGGGUUGGG	chr5:176980956-176981271(-)$1	315	82	102	26.7543
GGGUGGGGGGAGGGCCCGGG	chr2:28974735-28975049(+)$1	314	102	122	27.1929
ggggccggggcgggcgguga	chr4:52709261-52709620(+)$1	359	312	332	23.5964
gagcgcggggagggggccga	chr19:1592652-1592919(-)$1	267	91	111	24.2982
ggggggugggagggggggga	chr6:34664395-34664666(-)$1	271	87	107	28.8596
ggggguagggagagagggga	chr11:111170377-111170658(+)$1	281	68	88	21.3157
GGGGGCGGGGAGGAGGAGGA	chr4:129208761-129209058(-)$1	297	75	95	28.6842
gggggcggggcggcguccgg	chr12:49761090-49761399(+)$1	309	105	125	25.3508
gggggcugcgcgggggcggg	chr2:139259329-139259583(+)$1	254	89	109	26.2280
GGGGGCGGAGGUGGGAUGGG	chr19:51302263-51302556(-)$1	293	96	116	23.5087
GGGGGCGGGGAGGGGCGGAG	chr2:27434438-27434701(-)$1	263	4	24	32.3684
GGGCGCgggccggggcuggg	chr4:2935870-2936139(-)$1	269	72	92	25.1754
GGGAGCGAGGUGGGCGGGGG	chr16:28835296-28835580(+)$1	284	88	108	25.0877
ggggagggggaggggcggga	chr19:56652945-56653254(+)$1	309	70	90	26.8421
GGGCGUGGGGAAGGCGGCGG	chr9:79792464-79792729(+)$1	265	88	108	23.6842
GGGUGGGGGGUGGGGGUGGG	chr6:37142106-37142371(+)$1	265	40	60	28.7719

#otherMatches

#Struct PSSM
ddoooooodddd]a::::GG	chr10:111987245-111987583(+)$1	338	92	112	23.4210
:::CCCYYCCC~~~~FFFFF	chr2:230786502-230786762(-)$1	260	233	253	23.5087
%%bb[apppppppa]bb555	chr15:64752846-64753092(+)$1	246	20	40	24.5614
[bb[a[a[bb!!dddd!!dd	chr2:191513645-191513915(+)$1	270	120	140	22.9824
FFFFFFFFFF:ffffff!!d	chr20:361846-362083(+)$1	237	7	27	27.5438
cpppppppccc]bb777777	chr10:93667629-93668009(-)$1	380	89	109	25.5263
gg22eeeee22bbccc]eee	chr7:100732772-100733054(+)$1	282	111	131	27.8070
GGGGG{IIIIIIIII::ccc	chr15:66084357-66084614(-)$1	257	49	69	23.3333
$$ggggggg[bbbb[ccc[a	chr21:45284974-45285230(+)$1	256	93	113	23.7719
p============BBDDDD{	chr6:41748370-41748640(+)$1	270	26	46	27.4561
FFFFFF{EEEEEQQQQQQQQ	chr17:38278474-38278721(+)$1	247	1	21	27.8947
2ggggggg:bb[ffffff!!	chr19:41770630-41770884(+)$1	254	79	99	25.0000
2ccceeeee!!a[bb[eeee	chr2:209118872-209119137(-)$1	265	86	106	29.7368
^^^^^^^^^^^^^^^^eeee	chr10:120967075-120967360(+)$1	285	107	127	24.0350
bb!!bb[a[ddddnnnnndd	chr11:61634357-61634655(+)$1	298	41	61	21.0526
JJJKKA{A{EEEEE{A:a[g	chr2:32235525-32235782(-)$1	257	32	52	27.1929
hhhiiiiiiiii####ffff	chr12:76477660-76477927(-)$1	267	106	126	29.1228
fffff]==========22hh	chr1:150594855-150595155(-)$1	300	91	111	22.3684
=eeeeeggggggg[a[a###	chr3:41241461-41241750(+)$1	289	92	112	32.5438
RRRRRRFFFFFFKKDDDD{E	chr1:201123382-201123648(-)$1	266	94	114	25.0877
f:GGGGGGGKKDDDD{DDDD	chr8:17658252-17658522(-)$1	270	46	66	23.9473
==========]eeeee:::i	chr17:37618164-37618425(+)$1	261	88	108	22.3684
pppccccccnnnnnccceee	chr17:80192415-80192673(+)$1	258	107	127	25.1754
eqqqqqqqqeeeee999999	chr18:29077999-29078284(+)$1	285	90	110	29.4736
ga[eeeee&&&&&&&ddddn	chr9:38620154-38620433(-)$1	279	70	90	23.4210
hhhhh[eeeee[bb[bb[a[	chr12:30907490-30907767(-)$1	277	202	222	21.0526
dddd]a]abb]dddd=====	chr17:38078009-38078323(-)$1	314	100	120	22.7192
a[bb[dddd"""ggggggg[	chr15:64752892-64753142(+)$1	250	30	50	25.8771
{CCCKKDDDD::ffffff[e	chr2:20550295-20550521(-)$1	226	23	43	21.6666
EEEE}DDDDJJJJJJJJJJ{	chr20:8112759-8113032(+)$1	273	75	95	26.1403
lllbb]a]eeeee22ccc]a	chr17:36955674-36955947(-)$1	273	43	63	27.1929
nnddddA{A{FFFFFFccc#	chr19:56166236-56166481(+)$1	245	73	93	24.1228
MDDDD{FFFFFF{HHHHHHH	chr16:30958910-30959176(+)$1	266	17	37	21.9298
YYBB:eeeeemmmmeeeee:	chr6:32157584-32157846(-)$1	262	190	210	25.7894
b]eeeeeFFFFFF{BBCCCF	chr17:43238553-43238834(-)$1	281	34	54	27.6315
cc[dddd[bb!!bb[fffff	chr2:230786612-230786875(-)$1	263	101	121	23.7719
gggggg$$$$$bb[bbqqqq	chr14:32546395-32546618(+)$1	223	56	76	22.8947
mmmccc::eeeee!!bb!!c	chr18:8609577-8609890(+)$1	313	99	119	22.1052
AKKDDDDMMMMAKKABB::a	chr5:92920309-92920551(+)$1	242	16	36	29.2105
ffffbb[a[===========	chr2:208576280-208576542(+)$1	262	162	182	23.1578
EEEE{DDDD{BB{DDDDEEE	chr4:763944-764202(-)$1	258	95	115	27.6315
ICCC{DDDD{AKKCCCFFFF	chr5:176980956-176981271(-)$1	315	82	102	26.7543
ffffff]aEEEEEEEEEEFF	chr2:28974735-28975049(+)$1	314	102	122	27.1929
dddd22dddd]bbcccmmmm	chr4:52709261-52709620(+)$1	359	312	332	23.5964
c]dddd:::::::EEEEE::	chr19:1592652-1592919(-)$1	267	91	111	24.2982
EEEEMMMMEEEEEeeeee!!	chr6:34664395-34664666(-)$1	271	87	107	28.8596
shhhhhhhh>>>>>>>>>>>	chr11:111170377-111170658(+)$1	281	68	88	21.3157
=========:::::::::::	chr4:129208761-129209058(-)$1	297	75	95	28.6842
[a!!bb[a[bb!!a[iiiii	chr12:49761090-49761399(+)$1	309	105	125	25.3508
c55555ggggggg]a::BBK	chr2:139259329-139259583(+)$1	254	89	109	26.2280
CCLLLGGGGGGGMMMMEEEE	chr19:51302263-51302556(-)$1	293	96	116	23.5087
::::bbqqqqqqqqbb::::	chr2:27434438-27434701(-)$1	263	4	24	32.3684
bb]a]a]dddd]eeeee]bb	chr4:2935870-2936139(-)$1	269	72	92	25.1754
dddd"""ccc[eeeee[a[a	chr16:28835296-28835580(+)$1	284	88	108	25.0877
KKEEEEE{BBKKA{JJJJJJ	chr19:56652945-56653254(+)$1	309	70	90	26.8421
dCCC}A}BBZZZFFFFFF::	chr9:79792464-79792729(+)$1	265	88	108	23.6842
EEEEEIIIIIIIIIcccddd	chr6:37142106-37142371(+)$1	265	40	60	28.7719

#DB
((......)))).)....((	chr10:111987245-111987583(+)$1	1	92	112	23.4210
...)))..)))....)))))	chr2:230786502-230786762(-)$1	1	233	253	23.5087
..((.(.......).))...	chr15:64752846-64753092(+)$1	1	20	40	24.5614
.((.(.(.((..((((..((	chr2:191513645-191513915(+)$1	1	120	140	22.9824
((((((((((.((((((..(	chr20:361846-362083(+)$1	1	7	27	27.5438
(.......))).))......	chr10:93667629-93668009(-)$1	1	89	109	25.5263
))..)))))..))))).)))	chr7:100732772-100733054(+)$1	1	111	131	27.8070
(((((.(((((((((..(((	chr15:66084357-66084614(-)$1	1	49	69	23.3333
..(((((((.((((.(((.(	chr21:45284974-45285230(+)$1	1	93	113	23.7719
.))))))))))))((((((.	chr6:41748370-41748640(+)$1	1	26	46	27.4561
((((((.(((((........	chr17:38278474-38278721(+)$1	1	1	21	27.8947
.))))))).((.((((((..	chr19:41770630-41770884(+)$1	1	79	99	25.0000
.)))(((((..(.((.((((	chr2:209118872-209119137(-)$1	1	86	106	29.7368
................))))	chr10:120967075-120967360(+)$1	1	107	127	24.0350
((..((.(.((((.....))	chr11:61634357-61634655(+)$1	1	41	61	21.0526
(((..(.(.(((((.(.(.(	chr2:32235525-32235782(-)$1	1	32	52	27.1929
((((((((((((....((((	chr12:76477660-76477927(-)$1	1	106	126	29.1228
))))).))))))))))..))	chr1:150594855-150595155(-)$1	1	91	111	22.3684
)((((((((((((.(.(...	chr3:41241461-41241750(+)$1	1	92	112	32.5438
......((((((..((((.(	chr1:201123382-201123648(-)$1	1	94	114	25.0877
).(((((((..((((.((((	chr8:17658252-17658522(-)$1	1	46	66	23.9473
)))))))))).)))))...(	chr17:37618164-37618425(+)$1	1	88	108	22.3684
...)))(((.....)))(((	chr17:80192415-80192673(+)$1	1	107	127	25.1754
(........)))))......	chr18:29077999-29078284(+)$1	1	90	110	29.4736
)(.(((((.......((((.	chr9:38620154-38620433(-)$1	1	70	90	23.4210
(((((.(((((.((.((.(.	chr12:30907490-30907767(-)$1	1	202	222	21.0526
)))).).))).))))(((((	chr17:38078009-38078323(-)$1	1	100	120	22.7192
(.((.((((...(((((((.	chr15:64752892-64753142(+)$1	1	30	50	25.8771
.(((..((((..((((((.(	chr2:20550295-20550521(-)$1	1	23	43	21.6666
)))).))))((((((((((.	chr20:8112759-8113032(+)$1	1	75	95	26.1403
...)).).)))))..))).)	chr17:36955674-36955947(-)$1	1	43	63	27.1929
..))))(.(.(((((((((.	chr19:56166236-56166481(+)$1	1	73	93	24.1228
.((((.((((((.(((((((	chr16:30958910-30959176(+)$1	1	17	37	21.9298
..)).(((((....))))).	chr6:32157584-32157846(-)$1	1	190	210	25.7894
).)))))((((((.((((((	chr17:43238553-43238834(-)$1	1	34	54	27.6315
((.((((.((..((.(((((	chr2:230786612-230786875(-)$1	1	101	121	23.7719
((((((.....((.((....	chr14:32546395-32546618(+)$1	1	56	76	22.8947
...)))..(((((..((..(	chr18:8609577-8609890(+)$1	1	99	119	22.1052
(..((((....(..(((..(	chr5:92920309-92920551(+)$1	1	16	36	29.2105
))))((.(.(((((((((((	chr2:208576280-208576542(+)$1	1	162	182	23.1578
((((.((((.((.(((((((	chr4:763944-764202(-)$1	1	95	115	27.6315
((((.((((.(..(((((((	chr5:176980956-176981271(-)$1	1	82	102	26.7543
)))))).)))))))))))))	chr2:28974735-28975049(+)$1	1	102	122	27.1929
))))..)))).))(((....	chr4:52709261-52709620(+)$1	1	312	332	23.5964
).)))).......(((((..	chr19:1592652-1592919(-)$1	1	91	111	24.2982
((((....((((((((((..	chr6:34664395-34664666(-)$1	1	87	107	28.8596
.))))))))...........	chr11:111170377-111170658(+)$1	1	68	88	21.3157
)))))))))...........	chr4:129208761-129209058(-)$1	1	75	95	28.6842
.(..((.(.((..(.(((((	chr12:49761090-49761399(+)$1	1	105	125	25.3508
).....))))))).)..((.	chr2:139259329-139259583(+)$1	1	89	109	26.2280
((...(((((((....((((	chr19:51302263-51302556(-)$1	1	96	116	23.5087
....((........))....	chr2:27434438-27434701(-)$1	1	4	24	32.3684
)).).).)))).))))).))	chr4:2935870-2936139(-)$1	1	72	92	25.1754
((((...(((.(((((.(.(	chr16:28835296-28835580(+)$1	1	88	108	25.0877
..(((((.((..(.((((((	chr19:56652945-56653254(+)$1	1	70	90	26.8421
)))).).))...))))))..	chr9:79792464-79792729(+)$1	1	88	108	23.6842
((((((((((((((((((((	chr6:37142106-37142371(+)$1	1	40	60	28.7719

#PSSM
G : 0.43	g : 0.35	C : 0.08	a : 0.05	U : 0.03	c : 0.01	A : 0.01	
G : 0.52	g : 0.40	U : 0.01	u : 0.01	C : 0.01	a : 0.01	
G : 0.47	g : 0.36	A : 0.05	c : 0.03	u : 0.03	C : 0.01	U : 0.01	
g : 0.36	G : 0.35	A : 0.08	C : 0.07	c : 0.05	U : 0.05	a : 0.01	
G : 0.52	g : 0.38	c : 0.03	C : 0.01	U : 0.01	a : 0.01	
C : 0.29	c : 0.26	U : 0.14	g : 0.12	A : 0.07	G : 0.05	a : 0.03	u : 0.01	
G : 0.52	g : 0.35	u : 0.05	c : 0.03	C : 0.01	a : 0.01	
G : 0.52	g : 0.45	A : 0.01	
G : 0.45	g : 0.43	C : 0.03	A : 0.03	U : 0.01	c : 0.01	
G : 0.54	g : 0.38	c : 0.03	C : 0.01	a : 0.01	
A : 0.33	a : 0.22	c : 0.10	U : 0.08	G : 0.07	C : 0.07	u : 0.05	g : 0.05	
G : 0.49	g : 0.40	U : 0.03	c : 0.01	C : 0.01	a : 0.01	A : 0.01	
G : 0.50	g : 0.38	A : 0.03	c : 0.03	C : 0.01	a : 0.01	
G : 0.56	g : 0.40	A : 0.01	c : 0.01	
G : 0.36	g : 0.31	C : 0.14	c : 0.07	A : 0.03	a : 0.03	U : 0.03	
G : 0.31	g : 0.22	A : 0.10	c : 0.10	C : 0.10	a : 0.07	U : 0.05	u : 0.01	
G : 0.24	g : 0.19	U : 0.14	c : 0.12	C : 0.12	A : 0.08	a : 0.05	u : 0.03	
G : 0.38	g : 0.24	C : 0.12	c : 0.08	U : 0.07	a : 0.03	A : 0.03	u : 0.01	
G : 0.43	g : 0.31	c : 0.07	C : 0.07	A : 0.07	U : 0.03	
G : 0.47	g : 0.21	a : 0.12	c : 0.05	C : 0.05	A : 0.05	U : 0.03	

#score	1448.9473684210525
#seq	57
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_transcript_m2_run1.nuc.txt

#NT
GCGACGGC	chr17:62207226-62207579(-)$1	353	280	288	15.4285
ACGCCGGC	chr1:1167170-1167386(-)$1	216	163	171	14.9523
GCGCCCGC	chr3:127771254-127771501(+)$1	247	220	228	15.5079
GCGCGGGC	chr3:196439176-196439591(+)$1	415	295	303	15.7460
gccccggc	chrX:152954043-152954292(+)$1	249	73	81	15.5079
GCGCAGGC	chr11:134094642-134094920(+)$1	278	7	15	15.2698
GCCCCGGC	chr5:109025639-109025883(+)$1	244	22	30	15.5079
GUGCCGGC	chr20:32581616-32581867(+)$1	251	55	63	15.0317
GGGCCGGC	chr11:88070701-88070968(-)$1	267	20	28	15.1904
GCGGCGGC	chr5:139781416-139781649(+)$1	233	81	89	15.8253
GCGCCCGC	chr5:175843342-175843619(-)$1	277	66	74	15.5079
GCGCCGCC	chr21:45876338-45876642(+)$1	304	277	285	15.5873
GCGGCGGC	chr5:114880150-114880541(-)$1	391	291	299	15.8253
GCGGCGGC	chr4:119757095-119757341(-)$1	246	12	20	15.8253
GGGCCGGC	chr20:34638649-34638860(-)$1	211	56	64	15.1904
GAGCCGGC	chr20:60877935-60878205(+)$1	270	20	28	15.0317
GCGCCGGC	chr17:4843010-4843416(-)$1	406	70	78	19.5555
GCGCCUGC	chr17:80195079-80195313(+)$1	234	211	219	15.9047
GCACCGGC	chr12:861921-862297(+)$1	376	68	76	15.3492
ccgccggc	chr19:7580960-7581239(+)$1	279	76	84	14.9523
GCGCCGCC	chr2:208634001-208634217(-)$1	216	26	34	15.5873
GCGCCGGC	chr1:53192086-53192399(+)$1	313	175	183	19.5555
GCGCCUGC	chr11:64085523-64085831(+)$1	308	37	45	15.9047
GCGCCGGU	chr1:87380299-87380562(+)$1	263	27	35	14.9523
GCGCCUGC	chr1:27320150-27320440(+)$1	290	146	154	15.9047
GCGCCAGC	chr19:55998147-55998398(+)$1	251	215	223	15.4285
GCGCCGCC	chr1:9294894-9295175(+)$1	281	177	185	15.5873
UCGCCGGC	chr1:228675090-228675361(+)$1	271	28	36	15.0317
GGGCCGGC	chr20:34638704-34638947(-)$1	243	143	151	15.1904
GCGGCGGC	chr2:171571916-171572173(+)$1	257	61	69	15.8253
GCCCCGGC	chr9:34637476-34637791(-)$1	315	51	59	15.5079
GCGCCUGC	chr6:33756717-33757005(-)$1	288	43	51	15.9047
gcggcggc	chr1:1284344-1284613(-)$1	269	0	8	15.8253
GCGCCGGC	chr17:74380701-74380960(+)$1	259	8	16	19.5555
GCGCGGGC	chr17:28706022-28706252(+)$1	230	109	117	15.7460
gcgccggc	chr7:26191830-26192092(+)$1	262	253	261	19.5555
GCACCGGC	chr6:52930178-52930470(+)$1	292	8	16	15.3492
GCGCCGGG	chr11:47587133-47587465(+)$1	332	28	36	15.1111
GCGCCGGG	chr2:231577628-231577913(+)$1	285	16	24	15.1111
UCGCCGGC	chr1:36863282-36863586(-)$1	304	109	117	15.0317
gcgccugc	chr2:241508010-241508275(+)$1	265	241	249	15.9047
GCGCCUGC	chr1:16939860-16940136(-)$1	276	18	26	15.9047
GCUCCGGC	chr14:54423320-54423562(-)$1	242	135	143	15.3492
GCGCCGGC	chr2:21266795-21266998(-)$1	203	40	48	19.5555
GCGCGGGC	chr17:61919822-61920137(-)$1	315	116	124	15.7460
GCGCCGGC	chr17:27224540-27224782(-)$1	242	7	15	19.5555
GCGCGGGC	chr8:42752070-42752376(+)$1	306	124	132	15.7460
GCUCCGGC	chrX:133119421-133119641(-)$1	220	117	125	15.3492
GCGCGGGC	chr19:579418-579690(+)$1	272	29	37	15.7460
gcgccggg	chr11:27493945-27494194(-)$1	249	76	84	15.1111
GCGCCGGC	chr2:242498879-242499166(+)$1	287	152	160	19.5555
GCGCCGCC	chr4:1857493-1857764(-)$1	271	3	11	15.5873
GCGCCUGC	chr11:75236306-75236570(-)$1	264	248	256	15.9047
gccccggc	chr5:1523859-1524137(-)$1	278	7	15	15.5079
GCGCCGAC	chr8:96037134-96037426(+)$1	292	60	68	15.2698
GCGCCGUC	chr14:103800665-103800918(+)$1	253	40	48	15.3492
gcgcgggc	chr1:44444807-44445102(+)$1	295	51	59	15.7460
GCGGCGGC	chrX:16737694-16737942(+)$1	248	26	34	15.8253
GCGCGGGC	chr3:105086027-105086302(+)$1	275	143	151	15.7460
gcgccgcc	chr11:3876797-3877146(+)$1	349	77	85	15.5873
GCGGCGGC	chr11:130184182-130184478(-)$1	296	41	49	15.8253
gcgacggc	chr10:98346582-98346865(-)$1	283	113	121	15.4285

#otherMatches

#Struct PSSM
ZZEEEEEY	chr8:29940261-29940507(-)$1	246	227	235	15.3492
bbmmmmbb	chr17:62207226-62207579(-)$1	353	280	288	15.4285
:eeeeeoo	chr1:1167170-1167386(-)$1	216	163	171	14.9523
FFF:::ee	chr3:127771254-127771501(+)$1	247	220	228	15.5079
cc]dddd]	chr3:196439176-196439591(+)$1	415	295	303	15.7460
hhh"""cc	chrX:152954043-152954292(+)$1	249	73	81	15.5079
DDDD{DDD	chr11:134094642-134094920(+)$1	278	7	15	15.2698
f"""dddd	chr5:109025639-109025883(+)$1	244	22	30	15.5079
eeee:eee	chr20:32581616-32581867(+)$1	251	55	63	15.0317
DDDD:eee	chr11:88070701-88070968(-)$1	267	20	28	15.1904
iiiiii]b	chr5:139781416-139781649(+)$1	233	81	89	15.8253
b[eeeee#	chr5:175843342-175843619(-)$1	277	66	74	15.5079
F}FFFFFF	chr21:45876338-45876642(+)$1	304	277	285	15.5873
HHHHHHHH	chr5:114880150-114880541(-)$1	391	291	299	15.8253
EEEEEddd	chr4:119757095-119757341(-)$1	246	12	20	15.8253
lffffff]	chr20:34638649-34638860(-)$1	211	56	64	15.1904
:::HHHHH	chr20:60877935-60878205(+)$1	270	20	28	15.0317
[a[ggggg	chr17:4843010-4843416(-)$1	406	70	78	19.5555
ffffaccc	chr17:80195079-80195313(+)$1	234	211	219	15.9047
cc"""fff	chr12:861921-862297(+)$1	376	68	76	15.3492
========	chr19:7580960-7581239(+)$1	279	76	84	14.9523
BB::gggg	chr2:208634001-208634217(-)$1	216	26	34	15.5873
iiiiiiii	chr1:53192086-53192399(+)$1	313	175	183	19.5555
cc[fffff	chr11:64085523-64085831(+)$1	308	37	45	15.9047
eeeeeqqq	chr1:87380299-87380562(+)$1	263	27	35	14.9523
ccc333gg	chr1:27320150-27320440(+)$1	290	146	154	15.9047
eee[bbqq	chr19:55998147-55998398(+)$1	251	215	223	15.4285
ppdddd44	chr1:9294894-9295175(+)$1	281	177	185	15.5873
e:ffffff	chr1:228675090-228675361(+)$1	271	28	36	15.0317
lffffff]	chr20:34638704-34638947(-)$1	243	143	151	15.1904
dd[dddd[	chr2:171571916-171572173(+)$1	257	61	69	15.8253
ddd]ccc2	chr9:34637476-34637791(-)$1	315	51	59	15.5079
eeeeeeee	chr6:33756717-33757005(-)$1	288	43	51	15.9047
A{BBEEEE	chr1:1284344-1284613(-)$1	269	0	8	15.8253
:::fffff	chr17:74380701-74380960(+)$1	259	8	16	19.5555
DDEEEEED	chr17:28706022-28706252(+)$1	230	109	117	15.7460
CC}EEEEE	chr7:26191830-26192092(+)$1	262	253	261	19.5555
HHLLLCCC	chr6:52930178-52930470(+)$1	292	8	16	15.3492
========	chr11:47587133-47587465(+)$1	332	28	36	15.1111
CCCCCEEE	chr2:231577628-231577913(+)$1	285	16	24	15.1111
{A{CCC{C	chr1:36863282-36863586(-)$1	304	109	117	15.0317
c]ccc333	chr2:241508010-241508275(+)$1	265	241	249	15.9047
JJJJJJJJ	chr1:16939860-16940136(-)$1	276	18	26	15.9047
eeeennnn	chr14:54423320-54423562(-)$1	242	135	143	15.3492
ffffeeee	chr2:21266795-21266998(-)$1	203	40	48	19.5555
B{BBffff	chr17:61919822-61920137(-)$1	315	116	124	15.7460
iiiiiiii	chr17:27224540-27224782(-)$1	242	7	15	19.5555
FFFFFF{B	chr8:42752070-42752376(+)$1	306	124	132	15.7460
bb]fffff	chrX:133119421-133119641(-)$1	220	117	125	15.3492
BB{EEEEE	chr19:579418-579690(+)$1	272	29	37	15.7460
{Affffff	chr11:27493945-27494194(-)$1	249	76	84	15.1111
dd[ddddo	chr2:242498879-242499166(+)$1	287	152	160	19.5555
BB{EEEEE	chr4:1857493-1857764(-)$1	271	3	11	15.5873
DDDDYYCC	chr11:75236306-75236570(-)$1	264	248	256	15.9047
IIIIIIIK	chr5:1523859-1524137(-)$1	278	7	15	15.5079
f[ccc!!d	chr8:96037134-96037426(+)$1	292	60	68	15.2698
hhhhhh""	chr14:103800665-103800918(+)$1	253	40	48	15.3492
eeeedddd	chr1:44444807-44445102(+)$1	295	51	59	15.7460
ddIIIIII	chrX:16737694-16737942(+)$1	248	26	34	15.8253
eee]eeee	chr3:105086027-105086302(+)$1	275	143	151	15.7460
========	chr11:3876797-3877146(+)$1	349	77	85	15.5873
[ccc[eee	chr11:130184182-130184478(-)$1	296	41	49	15.8253
dd!!dddd	chr10:98346582-98346865(-)$1	283	113	121	15.4285

#DB
..))))).	chr8:29940261-29940507(-)$1	1	227	235	15.3492
((....))	chr17:62207226-62207579(-)$1	1	280	288	15.4285
.(((((..	chr1:1167170-1167386(-)$1	1	163	171	14.9523
)))...((	chr3:127771254-127771501(+)$1	1	220	228	15.5079
)).)))).	chr3:196439176-196439591(+)$1	1	295	303	15.7460
(((...((	chrX:152954043-152954292(+)$1	1	73	81	15.5079
((((.(((	chr11:134094642-134094920(+)$1	1	7	15	15.2698
(...((((	chr5:109025639-109025883(+)$1	1	22	30	15.5079
)))).(((	chr20:32581616-32581867(+)$1	1	55	63	15.0317
((((.(((	chr11:88070701-88070968(-)$1	1	20	28	15.1904
)))))).)	chr5:139781416-139781649(+)$1	1	81	89	15.8253
(.(((((.	chr5:175843342-175843619(-)$1	1	66	74	15.5079
).))))))	chr21:45876338-45876642(+)$1	1	277	285	15.5873
))))))))	chr5:114880150-114880541(-)$1	1	291	299	15.8253
((((((((	chr4:119757095-119757341(-)$1	1	12	20	15.8253
.)))))).	chr20:34638649-34638860(-)$1	1	56	64	15.1904
...(((((	chr20:60877935-60878205(+)$1	1	20	28	15.0317
.(.(((((	chr17:4843010-4843416(-)$1	1	70	78	19.5555
))))))))	chr17:80195079-80195313(+)$1	1	211	219	15.9047
((...(((	chr12:861921-862297(+)$1	1	68	76	15.3492
((((((((	chr19:7580960-7581239(+)$1	1	76	84	14.9523
((..((((	chr2:208634001-208634217(-)$1	1	26	34	15.5873
((((((((	chr1:53192086-53192399(+)$1	1	175	183	19.5555
((.(((((	chr11:64085523-64085831(+)$1	1	37	45	15.9047
(((((...	chr1:87380299-87380562(+)$1	1	27	35	14.9523
)))...))	chr1:27320150-27320440(+)$1	1	146	154	15.9047
(((.((..	chr19:55998147-55998398(+)$1	1	215	223	15.4285
..))))..	chr1:9294894-9295175(+)$1	1	177	185	15.5873
).((((((	chr1:228675090-228675361(+)$1	1	28	36	15.0317
.)))))).	chr20:34638704-34638947(-)$1	1	143	151	15.1904
((.((((.	chr2:171571916-171572173(+)$1	1	61	69	15.8253
))).))).	chr9:34637476-34637791(-)$1	1	51	59	15.5079
((((((((	chr6:33756717-33757005(-)$1	1	43	51	15.9047
(.((((((	chr1:1284344-1284613(-)$1	1	0	8	15.8253
...(((((	chr17:74380701-74380960(+)$1	1	8	16	19.5555
))))))))	chr17:28706022-28706252(+)$1	1	109	117	15.7460
)).)))))	chr7:26191830-26192092(+)$1	1	253	261	19.5555
((...(((	chr6:52930178-52930470(+)$1	1	8	16	15.3492
((((((((	chr11:47587133-47587465(+)$1	1	28	36	15.1111
((((((((	chr2:231577628-231577913(+)$1	1	16	24	15.1111
.(.(((.(	chr1:36863282-36863586(-)$1	1	109	117	15.0317
).)))...	chr2:241508010-241508275(+)$1	1	241	249	15.9047
((((((((	chr1:16939860-16940136(-)$1	1	18	26	15.9047
((((....	chr14:54423320-54423562(-)$1	1	135	143	15.3492
((((((((	chr2:21266795-21266998(-)$1	1	40	48	19.5555
(.((((((	chr17:61919822-61920137(-)$1	1	116	124	15.7460
((((((((	chr17:27224540-27224782(-)$1	1	7	15	19.5555
((((((.(	chr8:42752070-42752376(+)$1	1	124	132	15.7460
)).)))))	chrX:133119421-133119641(-)$1	1	117	125	15.3492
((.(((((	chr19:579418-579690(+)$1	1	29	37	15.7460
.(((((((	chr11:27493945-27494194(-)$1	1	76	84	15.1111
((.((((.	chr2:242498879-242499166(+)$1	1	152	160	19.5555
((.(((((	chr4:1857493-1857764(-)$1	1	3	11	15.5873
))))..))	chr11:75236306-75236570(-)$1	1	248	256	15.9047
(((((((.	chr5:1523859-1524137(-)$1	1	7	15	15.5079
(.(((..(	chr8:96037134-96037426(+)$1	1	60	68	15.2698
((((((..	chr14:103800665-103800918(+)$1	1	40	48	15.3492
))))((((	chr1:44444807-44445102(+)$1	1	51	59	15.7460
))((((((	chrX:16737694-16737942(+)$1	1	26	34	15.8253
))).))))	chr3:105086027-105086302(+)$1	1	143	151	15.7460
))))))))	chr11:3876797-3877146(+)$1	1	77	85	15.5873
.(((.(((	chr11:130184182-130184478(-)$1	1	41	49	15.8253
((..((((	chr10:98346582-98346865(-)$1	1	113	121	15.4285

#PSSM
G : 0.79	g : 0.14	U : 0.03	A : 0.01	c : 0.01	
C : 0.76	c : 0.15	G : 0.04	U : 0.01	A : 0.01	
G : 0.74	g : 0.12	c : 0.03	C : 0.03	A : 0.03	U : 0.03	
C : 0.73	c : 0.12	G : 0.09	A : 0.01	g : 0.01	a : 0.01	
C : 0.73	c : 0.14	G : 0.09	A : 0.01	g : 0.01	
G : 0.69	g : 0.14	U : 0.09	C : 0.03	A : 0.01	u : 0.01	
G : 0.73	g : 0.14	C : 0.06	U : 0.03	A : 0.01	c : 0.01	
C : 0.79	c : 0.14	G : 0.03	U : 0.01	g : 0.01	

#score	1005.0158730158723
#seq	63
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF469SRC_SAFB_transcript_m1_run2.nuc.txt

#NT
cagg	chr17:53368570-53368861(+)$1	291	99	103	12.0000
CAGG	chr14:58733078-58733375(-)$1	297	194	198	12.0000
cagg	chr2:63081988-63082240(+)$1	252	6	10	12.0000
cagg	chr2:71622591-71622849(+)$1	258	120	124	12.0000
CAGG	chr11:65267800-65268015(+)$1	215	66	70	12.0000
cagg	chr2:242266230-242266511(+)$1	281	43	47	12.0000
CAGG	chr1:78098338-78098678(-)$1	340	228	232	12.0000
CAGG	chr16:52522680-52522940(-)$1	260	118	122	12.0000
cagg	chr2:238487816-238488103(-)$1	287	102	106	12.0000
CAGG	chr11:65268076-65268281(+)$1	205	13	17	12.0000
cagg	chr6:167358205-167358464(-)$1	259	19	23	12.0000
CAGG	chr22:36633788-36634112(-)$1	324	21	25	12.0000
CAGG	chr8:13071857-13072109(-)$1	252	146	150	12.0000
CAGG	chr2:42426282-42426550(+)$1	268	190	194	12.0000
CAGG	chr13:98013648-98013951(+)$1	303	64	68	12.0000
cagg	chr7:158242710-158242979(-)$1	269	13	17	12.0000
CAGG	chr20:30951596-30951877(+)$1	281	152	156	12.0000
cagg	chr3:38456790-38457093(+)$1	303	253	257	12.0000
cagg	chrX:133005108-133005344(-)$1	236	68	72	12.0000
CAGG	chr2:241565005-241565287(+)$1	282	19	23	12.0000
CAGG	chr18:3597300-3597608(+)$1	308	4	8	12.0000
cagg	chr20:36134504-36134802(-)$1	298	10	14	12.0000
CAGG	chr17:164082-164327(-)$1	245	10	14	12.0000
cagg	chr13:98015659-98015935(+)$1	276	149	153	12.0000
CAGG	chr7:29252930-29253193(+)$1	263	209	213	12.0000
CAGG	chr15:85651308-85651656(+)$1	348	177	181	12.0000
cagg	chrX:20270983-20271285(-)$1	302	71	75	12.0000
cagg	chr16:8936923-8937341(+)$1	418	13	17	12.0000
CAGG	chr15:25235602-25235856(+)$1	254	26	30	12.0000
CAGG	chr6:47943701-47944025(-)$1	324	104	108	12.0000
CAGG	chrX:73424500-73424746(-)$1	246	220	224	12.0000
CAGG	chr11:65267928-65268136(+)$1	208	76	80	12.0000
CAGG	chr11:65268108-65268332(+)$1	224	17	21	12.0000
cagg	chr7:157944170-157944467(-)$1	297	23	27	12.0000
CAGG	chr7:157664108-157664381(-)$1	273	121	125	12.0000
cagg	chr2:238507061-238507312(-)$1	251	10	14	12.0000
CAGG	chr16:89547133-89547430(-)$1	297	168	172	12.0000
CAGG	chr1:44926158-44926525(+)$1	367	50	54	12.0000
CAGG	chr1:203767352-203767657(+)$1	305	187	191	12.0000
cagg	chr20:8153591-8153880(+)$1	289	34	38	12.0000
CAGG	chr8:13071909-13072162(-)$1	253	199	203	12.0000
CAGG	chr11:65267936-65268145(+)$1	209	68	72	12.0000
CAGG	chr17:165313-165585(-)$1	272	0	4	12.0000
CAGG	chr8:13099138-13099411(-)$1	273	150	154	12.0000
CAGG	chr11:65268038-65268265(+)$1	227	51	55	12.0000
cagg	chr22:51147618-51147934(+)$1	316	133	137	12.0000
CAGG	chr1:146675709-146675980(-)$1	271	19	23	12.0000
CAGG	chr12:125265689-125265973(-)$1	284	98	102	12.0000
CAGG	chr1:44988694-44988994(+)$1	300	268	272	12.0000
CAGG	chr19:56152582-56152893(+)$1	311	19	23	12.0000
cagg	chr11:74474802-74475053(+)$1	251	131	135	12.0000
cagg	chr8:9629524-9629813(+)$1	289	86	90	12.0000
CAGG	chr11:65268069-65268276(+)$1	207	20	24	12.0000
cagg	chr12:26804735-26805033(-)$1	298	52	56	12.0000
cagg	chr7:158258707-158258988(-)$1	281	43	47	12.0000
CAGG	chr7:157944020-157944292(-)$1	272	35	39	12.0000
CAGG	chr11:65268150-65268360(+)$1	210	13	17	12.0000
CAGG	chr3:196694482-196694770(-)$1	288	149	153	12.0000
cagg	chr1:2324762-2325066(+)$1	304	2	6	12.0000
CAGG	chr11:65268030-65268233(+)$1	203	59	63	12.0000
cagg	chr2:75779151-75779417(-)$1	266	191	195	12.0000
cagg	chr7:157033630-157033936(+)$1	306	5	9	12.0000
CAGG	chr3:196693479-196693757(-)$1	278	16	20	12.0000
CAGG	chr6:158989397-158989651(+)$1	254	8	12	12.0000
CAGG	chr20:8183185-8183433(+)$1	248	136	140	12.0000
cagg	chr22:36625135-36625440(-)$1	305	16	20	12.0000
CAGG	chr7:157568224-157568493(-)$1	269	17	21	12.0000
CAGG	chr2:236961541-236961858(+)$1	317	122	126	12.0000
CAGG	chr8:62550939-62551233(-)$1	294	16	20	12.0000
cagg	chr12:26941401-26941677(-)$1	276	29	33	12.0000
CAGG	chr11:65268019-65268226(+)$1	207	70	74	12.0000
cagg	chr2:36627396-36627724(+)$1	328	131	135	12.0000
CAGG	chr3:186332342-186332593(+)$1	251	34	38	12.0000
CAGG	chr7:158212678-158212958(-)$1	280	56	60	12.0000
CAGG	chr17:164425-164759(-)$1	334	27	31	12.0000
CAGG	chr16:87957134-87957393(-)$1	259	174	178	12.0000
CAGG	chr7:130594123-130594528(-)$1	405	34	38	12.0000
CAGG	chr17:73889703-73889996(-)$1	293	55	59	12.0000
CAGG	chr6:3301968-3302222(-)$1	254	214	218	12.0000
CAGG	chr11:65267983-65268191(+)$1	208	21	25	12.0000
CAGG	chr11:65268008-65268219(+)$1	211	81	85	12.0000
cagg	chr17:53369453-53369701(+)$1	248	74	78	12.0000
cagg	chr2:102470174-102470444(+)$1	270	85	89	12.0000
CAGG	chr11:65268026-65268230(+)$1	204	63	67	12.0000
CAGG	chr3:197243898-197244182(-)$1	284	42	46	12.0000
CAGG	chr13:98013592-98013848(+)$1	256	51	55	12.0000
CAGG	chr16:8926006-8926286(+)$1	280	17	21	12.0000
CAGG	chr3:197243757-197244098(-)$1	341	10	14	12.0000

#otherMatches

#Struct PSSM
gggg	chr4:89694038-89694333(-)$1	295	24	28	12.0000
eeee	chr17:53368570-53368861(+)$1	291	99	103	12.0000
@@@@	chr14:58733078-58733375(-)$1	297	194	198	12.0000
::ee	chr2:63081988-63082240(+)$1	252	6	10	12.0000
""cc	chr2:71622591-71622849(+)$1	258	120	124	12.0000
b[bb	chr11:65267800-65268015(+)$1	215	66	70	12.0000
EBBD	chr2:242266230-242266511(+)$1	281	43	47	12.0000
gggg	chr1:78098338-78098678(-)$1	340	228	232	12.0000
a22b	chr16:52522680-52522940(-)$1	260	118	122	12.0000
dddq	chr2:238487816-238488103(-)$1	287	102	106	12.0000
HHHH	chr11:65268076-65268281(+)$1	205	13	17	12.0000
DDDK	chr6:167358205-167358464(-)$1	259	19	23	12.0000
hhhh	chr22:36633788-36634112(-)$1	324	21	25	12.0000
lldd	chr8:13071857-13072109(-)$1	252	146	150	12.0000
!!ee	chr2:42426282-42426550(+)$1	268	190	194	12.0000
eeee	chr13:98013648-98013951(+)$1	303	64	68	12.0000
eee[	chr7:158242710-158242979(-)$1	269	13	17	12.0000
BB}B	chr20:30951596-30951877(+)$1	281	152	156	12.0000
dddd	chr3:38456790-38457093(+)$1	303	253	257	12.0000
b:::	chrX:133005108-133005344(-)$1	236	68	72	12.0000
bmmm	chr2:241565005-241565287(+)$1	282	19	23	12.0000
HHHH	chr18:3597300-3597608(+)$1	308	4	8	12.0000
mmee	chr20:36134504-36134802(-)$1	298	10	14	12.0000
FFF:	chr17:164082-164327(-)$1	245	10	14	12.0000
====	chr13:98015659-98015935(+)$1	276	149	153	12.0000
ddee	chr7:29252930-29253193(+)$1	263	209	213	12.0000
IIII	chr15:85651308-85651656(+)$1	348	177	181	12.0000
ffff	chrX:20270983-20271285(-)$1	302	71	75	12.0000
EEEE	chr16:8936923-8937341(+)$1	418	13	17	12.0000
::CC	chr15:25235602-25235856(+)$1	254	26	30	12.0000
!fff	chr6:47943701-47944025(-)$1	324	104	108	12.0000
pggg	chrX:73424500-73424746(-)$1	246	220	224	12.0000
c###	chr11:65267928-65268136(+)$1	208	76	80	12.0000
eeee	chr11:65268108-65268332(+)$1	224	17	21	12.0000
pppp	chr7:157944170-157944467(-)$1	297	23	27	12.0000
:ccc	chr7:157664108-157664381(-)$1	273	121	125	12.0000
b[bb	chr2:238507061-238507312(-)$1	251	10	14	12.0000
[bb[	chr16:89547133-89547430(-)$1	297	168	172	12.0000
JJJJ	chr1:44926158-44926525(+)$1	367	50	54	12.0000
""gg	chr1:203767352-203767657(+)$1	305	187	191	12.0000
dddd	chr20:8153591-8153880(+)$1	289	34	38	12.0000
lldd	chr8:13071909-13072162(-)$1	253	199	203	12.0000
c###	chr11:65267936-65268145(+)$1	209	68	72	12.0000
::DD	chr17:165313-165585(-)$1	272	0	4	12.0000
:::g	chr8:13099138-13099411(-)$1	273	150	154	12.0000
dnnn	chr11:65268038-65268265(+)$1	227	51	55	12.0000
eeee	chr22:51147618-51147934(+)$1	316	133	137	12.0000
eeee	chr1:146675709-146675980(-)$1	271	19	23	12.0000
2ddd	chr12:125265689-125265973(-)$1	284	98	102	12.0000
a22b	chr1:44988694-44988994(+)$1	300	268	272	12.0000
CKKB	chr19:56152582-56152893(+)$1	311	19	23	12.0000
!eee	chr11:74474802-74475053(+)$1	251	131	135	12.0000
:::a	chr8:9629524-9629813(+)$1	289	86	90	12.0000
HHHH	chr11:65268069-65268276(+)$1	207	20	24	12.0000
ddFF	chr12:26804735-26805033(-)$1	298	52	56	12.0000
B:a[	chr7:158258707-158258988(-)$1	281	43	47	12.0000
gggg	chr7:157944020-157944292(-)$1	272	35	39	12.0000
ooob	chr11:65268150-65268360(+)$1	210	13	17	12.0000
oocc	chr3:196694482-196694770(-)$1	288	149	153	12.0000
DDD{	chr1:2324762-2325066(+)$1	304	2	6	12.0000
dnnn	chr11:65268030-65268233(+)$1	203	59	63	12.0000
eeee	chr2:75779151-75779417(-)$1	266	191	195	12.0000
ddd!	chr7:157033630-157033936(+)$1	306	5	9	12.0000
GGGf	chr3:196693479-196693757(-)$1	278	16	20	12.0000
FFFF	chr6:158989397-158989651(+)$1	254	8	12	12.0000
DDDY	chr20:8183185-8183433(+)$1	248	136	140	12.0000
::::	chr22:36625135-36625440(-)$1	305	16	20	12.0000
KKCC	chr7:157568224-157568493(-)$1	269	17	21	12.0000
BZZZ	chr2:236961541-236961858(+)$1	317	122	126	12.0000
KFFF	chr8:62550939-62551233(-)$1	294	16	20	12.0000
ffff	chr12:26941401-26941677(-)$1	276	29	33	12.0000
dnnn	chr11:65268019-65268226(+)$1	207	70	74	12.0000
c22c	chr2:36627396-36627724(+)$1	328	131	135	12.0000
eee]	chr3:186332342-186332593(+)$1	251	34	38	12.0000
gggg	chr7:158212678-158212958(-)$1	280	56	60	12.0000
""dd	chr17:164425-164759(-)$1	334	27	31	12.0000
eeee	chr16:87957134-87957393(-)$1	259	174	178	12.0000
eeee	chr7:130594123-130594528(-)$1	405	34	38	12.0000
a!!d	chr17:73889703-73889996(-)$1	293	55	59	12.0000
EEEE	chr6:3301968-3302222(-)$1	254	214	218	12.0000
c###	chr11:65267983-65268191(+)$1	208	21	25	12.0000
dnnn	chr11:65268008-65268219(+)$1	211	81	85	12.0000
ddd]	chr17:53369453-53369701(+)$1	248	74	78	12.0000
ccc]	chr2:102470174-102470444(+)$1	270	85	89	12.0000
dnnn	chr11:65268026-65268230(+)$1	204	63	67	12.0000
cccp	chr3:197243898-197244182(-)$1	284	42	46	12.0000
dlll	chr13:98013592-98013848(+)$1	256	51	55	12.0000
RRRR	chr16:8926006-8926286(+)$1	280	17	21	12.0000
dddd	chr3:197243757-197244098(-)$1	341	10	14	12.0000

#DB
((((	chr4:89694038-89694333(-)$1	1	24	28	12.0000
))))	chr17:53368570-53368861(+)$1	1	99	103	12.0000
....	chr14:58733078-58733375(-)$1	1	194	198	12.0000
..((	chr2:63081988-63082240(+)$1	1	6	10	12.0000
..((	chr2:71622591-71622849(+)$1	1	120	124	12.0000
(.((	chr11:65267800-65268015(+)$1	1	66	70	12.0000
((((	chr2:242266230-242266511(+)$1	1	43	47	12.0000
))))	chr1:78098338-78098678(-)$1	1	228	232	12.0000
)..)	chr16:52522680-52522940(-)$1	1	118	122	12.0000
(((.	chr2:238487816-238488103(-)$1	1	102	106	12.0000
((((	chr11:65268076-65268281(+)$1	1	13	17	12.0000
(((.	chr6:167358205-167358464(-)$1	1	19	23	12.0000
((((	chr22:36633788-36634112(-)$1	1	21	25	12.0000
..))	chr8:13071857-13072109(-)$1	1	146	150	12.0000
..((	chr2:42426282-42426550(+)$1	1	190	194	12.0000
((((	chr13:98013648-98013951(+)$1	1	64	68	12.0000
(((.	chr7:158242710-158242979(-)$1	1	13	17	12.0000
)).)	chr20:30951596-30951877(+)$1	1	152	156	12.0000
((((	chr3:38456790-38457093(+)$1	1	253	257	12.0000
)...	chrX:133005108-133005344(-)$1	1	68	72	12.0000
(...	chr2:241565005-241565287(+)$1	1	19	23	12.0000
((((	chr18:3597300-3597608(+)$1	1	4	8	12.0000
..))	chr20:36134504-36134802(-)$1	1	10	14	12.0000
(((.	chr17:164082-164327(-)$1	1	10	14	12.0000
((((	chr13:98015659-98015935(+)$1	1	149	153	12.0000
))((	chr7:29252930-29253193(+)$1	1	209	213	12.0000
((((	chr15:85651308-85651656(+)$1	1	177	181	12.0000
))))	chrX:20270983-20271285(-)$1	1	71	75	12.0000
((((	chr16:8936923-8937341(+)$1	1	13	17	12.0000
..((	chr15:25235602-25235856(+)$1	1	26	30	12.0000
.(((	chr6:47943701-47944025(-)$1	1	104	108	12.0000
.)))	chrX:73424500-73424746(-)$1	1	220	224	12.0000
(...	chr11:65267928-65268136(+)$1	1	76	80	12.0000
((((	chr11:65268108-65268332(+)$1	1	17	21	12.0000
....	chr7:157944170-157944467(-)$1	1	23	27	12.0000
.(((	chr7:157664108-157664381(-)$1	1	121	125	12.0000
(.((	chr2:238507061-238507312(-)$1	1	10	14	12.0000
.((.	chr16:89547133-89547430(-)$1	1	168	172	12.0000
((((	chr1:44926158-44926525(+)$1	1	50	54	12.0000
..((	chr1:203767352-203767657(+)$1	1	187	191	12.0000
((((	chr20:8153591-8153880(+)$1	1	34	38	12.0000
..))	chr8:13071909-13072162(-)$1	1	199	203	12.0000
(...	chr11:65267936-65268145(+)$1	1	68	72	12.0000
..((	chr17:165313-165585(-)$1	1	0	4	12.0000
...(	chr8:13099138-13099411(-)$1	1	150	154	12.0000
(...	chr11:65268038-65268265(+)$1	1	51	55	12.0000
))))	chr22:51147618-51147934(+)$1	1	133	137	12.0000
((((	chr1:146675709-146675980(-)$1	1	19	23	12.0000
.)))	chr12:125265689-125265973(-)$1	1	98	102	12.0000
)..)	chr1:44988694-44988994(+)$1	1	268	272	12.0000
(..(	chr19:56152582-56152893(+)$1	1	19	23	12.0000
.(((	chr11:74474802-74475053(+)$1	1	131	135	12.0000
...(	chr8:9629524-9629813(+)$1	1	86	90	12.0000
((((	chr11:65268069-65268276(+)$1	1	20	24	12.0000
))((	chr12:26804735-26805033(-)$1	1	52	56	12.0000
(.(.	chr7:158258707-158258988(-)$1	1	43	47	12.0000
((((	chr7:157944020-157944292(-)$1	1	35	39	12.0000
...)	chr11:65268150-65268360(+)$1	1	13	17	12.0000
..))	chr3:196694482-196694770(-)$1	1	149	153	12.0000
(((.	chr1:2324762-2325066(+)$1	1	2	6	12.0000
(...	chr11:65268030-65268233(+)$1	1	59	63	12.0000
((((	chr2:75779151-75779417(-)$1	1	191	195	12.0000
(((.	chr7:157033630-157033936(+)$1	1	5	9	12.0000
((((	chr3:196693479-196693757(-)$1	1	16	20	12.0000
((((	chr6:158989397-158989651(+)$1	1	8	12	12.0000
))).	chr20:8183185-8183433(+)$1	1	136	140	12.0000
....	chr22:36625135-36625440(-)$1	1	16	20	12.0000
..((	chr7:157568224-157568493(-)$1	1	17	21	12.0000
)...	chr2:236961541-236961858(+)$1	1	122	126	12.0000
.(((	chr8:62550939-62551233(-)$1	1	16	20	12.0000
))))	chr12:26941401-26941677(-)$1	1	29	33	12.0000
(...	chr11:65268019-65268226(+)$1	1	70	74	12.0000
)..)	chr2:36627396-36627724(+)$1	1	131	135	12.0000
))).	chr3:186332342-186332593(+)$1	1	34	38	12.0000
))))	chr7:158212678-158212958(-)$1	1	56	60	12.0000
..((	chr17:164425-164759(-)$1	1	27	31	12.0000
))))	chr16:87957134-87957393(-)$1	1	174	178	12.0000
((((	chr7:130594123-130594528(-)$1	1	34	38	12.0000
(..(	chr17:73889703-73889996(-)$1	1	55	59	12.0000
))))	chr6:3301968-3302222(-)$1	1	214	218	12.0000
(...	chr11:65267983-65268191(+)$1	1	21	25	12.0000
(...	chr11:65268008-65268219(+)$1	1	81	85	12.0000
))).	chr17:53369453-53369701(+)$1	1	74	78	12.0000
))).	chr2:102470174-102470444(+)$1	1	85	89	12.0000
(...	chr11:65268026-65268230(+)$1	1	63	67	12.0000
(((.	chr3:197243898-197244182(-)$1	1	42	46	12.0000
(...	chr13:98013592-98013848(+)$1	1	51	55	12.0000
....	chr16:8926006-8926286(+)$1	1	17	21	12.0000
((((	chr3:197243757-197244098(-)$1	1	10	14	12.0000

#PSSM
C : 0.66	c : 0.33	
A : 0.66	a : 0.33	
G : 0.66	g : 0.33	
G : 0.66	g : 0.33	

#score	1068.0000000000002
#seq	89
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_transcript_m3_run2.nuc.txt

#NT
UCUUGUGUCUUU	chr3:37402749-37403000(+)$1	251	64	76	15.2307
UCUUCUGUGUUU	chr17:38149787-38150035(+)$1	248	62	74	15.2307
ucuuuuuuuuuu	chr5:68672313-68672610(+)$1	297	274	286	24.8461
UCUUUUCCCUUU	chr14:90317037-90317308(-)$1	271	175	187	15.9038
uaauuuuucuuu	chr5:43299811-43300072(-)$1	261	92	104	15.7115
uauuuuauuuuU	chr6:128327227-128327497(-)$1	270	190	202	20.4230
uguuuuuuuguu	chr1:75730971-75731239(-)$1	268	235	247	19.2692
UCuuuuuuuuuu	chr11:89996727-89997050(+)$1	323	271	283	24.8461
UGUUUUUUUUUU	chr6:155161272-155161524(+)$1	252	177	189	23.5961
ACUUUCUUUUUU	chr3:99590763-99591092(+)$1	329	66	78	17.3461
uguuuugauuuu	chr11:90339598-90339869(+)$1	271	201	213	17.3461
ucucuuuuuuuc	chr4:120984057-120984308(-)$1	251	88	100	15.6153
uauuuuaauuuu	chr15:56424437-56424754(-)$1	317	49	61	16.9615
GGUUUUUUCUUU	chr9:101881307-101881623(+)$1	316	22	34	16.6730
ucuuuuuuuuuu	chr20:3201832-3202078(+)$1	246	26	38	24.8461
CCUUUUUUUUCU	chr14:36017347-36017568(-)$1	221	120	132	16.4807
UUUUUGCUUUUU	chr13:75976748-75977006(-)$1	258	0	12	16.4807
UCUUUCUUUUUA	chr17:55730962-55731261(+)$1	299	77	89	16.7692
uuuuuuuuuuuu	chr11:102075652-102075934(+)$1	282	234	246	22.5384
GCUUUCUUCUUU	chr1:167227624-167227874(+)$1	250	84	96	14.5576
UCUUUGUAAUUU	chr14:59954807-59955141(+)$1	334	55	67	14.5576
UGUAUUUUCUUU	chr13:33825649-33825998(-)$1	349	183	195	16.2884
uauuuuucauuu	chr6:24246021-24246312(-)$1	291	207	219	16.1923
ucuucuuguuuu	chr2:170563811-170564056(+)$1	245	156	168	17.7307
UCUUUGCUGUUU	chr8:26197657-26197947(+)$1	290	200	212	15.5192
uguuuuaauuuu	chr5:78243811-78244110(-)$1	299	202	214	17.5384
UGUUUCUUCUUU	chr10:79797122-79797412(+)$1	290	40	52	17.3461
UGUUUUUCUUAU	chr5:58945067-58945430(-)$1	363	203	215	15.9038
UCUGUUUGUUUU	chr12:121313608-121313896(-)$1	288	77	89	16.7692
CCUUUUUGUUUU	chr17:42543879-42544105(-)$1	226	56	68	17.1538
UCUUCUUUUUCU	chr13:33169161-33169462(+)$1	301	19	31	17.0576
UGuuuguuuguu	chr16:66860732-66860986(-)$1	254	4	16	15.9038
UAUUUUUUUUUU	chr12:70725485-70725802(+)$1	317	262	274	23.0192
UAUUUUAUUUUU	chr5:95262543-95262838(-)$1	295	243	255	20.4230
UGUUUUCUUUGU	chr1:21497916-21498186(-)$1	270	63	75	16.7692
UGUUUAUUUUUU	chr13:50783444-50783731(+)$1	287	218	230	19.9423
GCUUUUUUCUUU	chr20:40239376-40239691(-)$1	315	88	100	17.9230
UCUUUUCUUUUU	chr7:122344113-122344394(-)$1	281	236	248	22.1538
UGUUuuguuguu	chr22:28270915-28271177(-)$1	262	177	189	16.4807
ucuauuuuuugu	chr1:76059386-76059693(-)$1	307	82	94	16.2884
ucuuuauuguuu	chr18:59903771-59904059(+)$1	288	242	254	17.9230
ucuuuuauuugu	chr2:167107769-167108028(-)$1	259	203	215	18.1153
AGUUGUUUUUUU	chr4:160205294-160205570(+)$1	276	38	50	15.5192
ucuuuuuuuuuu	chr9:88583493-88583840(+)$1	347	54	66	24.8461
ucauuguuuuuu	chr20:13555230-13555499(-)$1	269	36	48	17.0576
UGUUCUGUUUUU	chr2:9378141-9378430(+)$1	289	209	221	17.2499
UUUUAUUUUUUU	chr3:176850194-176850466(-)$1	272	84	96	18.4999
UCUUCUCCUUUU	chrX:131164082-131164380(+)$1	298	252	264	15.2307
ucuuucauguuu	chr17:45708396-45708667(-)$1	271	85	97	15.6153
UAAUUUUUUUUU	chr2:75771722-75771987(-)$1	265	229	241	18.5961
ucuucuuuucuu	chr15:56464601-56464947(-)$1	346	26	38	16.7692

#otherMatches

#Struct PSSM
e####=======	chrX:131561243-131561505(-)$1	262	86	98	17.0576
mmdddd]eeeee	chr3:37402749-37403000(+)$1	251	64	76	15.2307
nnnnneeeee22	chr17:38149787-38150035(+)$1	248	62	74	15.2307
d666666ccc]g	chr5:68672313-68672610(+)$1	297	274	286	24.8461
dd:ddddddddm	chr14:90317037-90317308(-)$1	271	175	187	15.9038
d$$$$$eeeee#	chr5:43299811-43300072(-)$1	261	92	104	15.7115
b]dddddddd!!	chr6:128327227-128327497(-)$1	270	190	202	20.4230
^^^^^^^^^^^^	chr1:75730971-75731239(-)$1	268	235	247	19.2692
::::::::::::	chr11:89996727-89997050(+)$1	323	271	283	24.8461
eee333dddd22	chr6:155161272-155161524(+)$1	252	177	189	23.5961
ddd''''''''e	chr3:99590763-99591092(+)$1	329	66	78	17.3461
ddd"""ddddmm	chr11:90339598-90339869(+)$1	271	201	213	17.3461
::ffffffeeee	chr4:120984057-120984308(-)$1	251	88	100	15.6153
++++++++++++	chr15:56424437-56424754(-)$1	317	49	61	16.9615
DDDDTTTTTTTT	chr9:101881307-101881623(+)$1	316	22	34	16.6730
::::::::::::	chr20:3201832-3202078(+)$1	246	26	38	24.8461
dbb[gggggggd	chr14:36017347-36017568(-)$1	221	120	132	16.4807
:::::HHHHHHH	chr13:75976748-75977006(-)$1	258	0	12	16.4807
ff!!cccttttt	chr17:55730962-55731261(+)$1	299	77	89	16.7692
mmmmiiiiiiii	chr11:102075652-102075934(+)$1	282	234	246	22.5384
FFFKKEEEEEMM	chr1:167227624-167227874(+)$1	250	84	96	14.5576
JJJJJJJJJJJJ	chr14:59954807-59955141(+)$1	334	55	67	14.5576
e]ccchhhhhhh	chr13:33825649-33825998(-)$1	349	183	195	16.2884
::::::::::::	chr6:24246021-24246312(-)$1	291	207	219	16.1923
uuuuuuuuuuuu	chr2:170563811-170564056(+)$1	245	156	168	17.7307
55eeeeedddd]	chr8:26197657-26197947(+)$1	290	200	212	15.5192
EEEEE:::::::	chr5:78243811-78244110(-)$1	299	202	214	17.5384
eeeeffffff!!	chr10:79797122-79797412(+)$1	290	40	52	17.3461
cc::::ddddpp	chr5:58945067-58945430(-)$1	363	203	215	15.9038
=[bb[cccoooo	chr12:121313608-121313896(-)$1	288	77	89	16.7692
fff"""eeeeed	chr17:42543879-42544105(-)$1	226	56	68	17.1538
::::EEEEELLL	chr13:33169161-33169462(+)$1	301	19	31	17.0576
FFFFFFKKBBLL	chr16:66860732-66860986(-)$1	254	4	16	15.9038
f[==========	chr12:70725485-70725802(+)$1	317	262	274	23.0192
YCCCZZZEEEEE	chr5:95262543-95262838(-)$1	295	243	255	20.4230
c]ggggggg22d	chr1:21497916-21498186(-)$1	270	63	75	16.7692
zzzzzhhhhhhh	chr13:50783444-50783731(+)$1	287	218	230	19.9423
fffccc[eeeee	chr20:40239376-40239691(-)$1	315	88	100	17.9230
EEEZZZCCC}FF	chr7:122344113-122344394(-)$1	281	236	248	22.1538
nnnnneeeee:E	chr22:28270915-28271177(-)$1	262	177	189	16.4807
]ffffff333dd	chr1:76059386-76059693(-)$1	307	82	94	16.2884
9999999eeeee	chr18:59903771-59904059(+)$1	288	242	254	17.9230
hhhhh::::::C	chr2:167107769-167108028(-)$1	259	203	215	18.1153
EEEEEOOOOOOF	chr4:160205294-160205570(+)$1	276	38	50	15.5192
c:::::::::::	chr9:88583493-88583840(+)$1	347	54	66	24.8461
::::::::::::	chr20:13555230-13555499(-)$1	269	36	48	17.0576
d>>>>>>>>>>>	chr2:9378141-9378430(+)$1	289	209	221	17.2499
FKKBBPPPPPPP	chr3:176850194-176850466(-)$1	272	84	96	18.4999
::::::::::::	chrX:131164082-131164380(+)$1	298	252	264	15.2307
::::::eeeeep	chr17:45708396-45708667(-)$1	271	85	97	15.6153
========:::F	chr2:75771722-75771987(-)$1	265	229	241	18.5961
::::::::::::	chr15:56464601-56464947(-)$1	346	26	38	16.7692

#DB
(....(((((((	chrX:131561243-131561505(-)$1	1	86	98	17.0576
..)))).)))))	chr3:37402749-37403000(+)$1	1	64	76	15.2307
.....)))))..	chr17:38149787-38150035(+)$1	1	62	74	15.2307
)......))).)	chr5:68672313-68672610(+)$1	1	274	286	24.8461
)).((((((((.	chr14:90317037-90317308(-)$1	1	175	187	15.9038
(.....(((((.	chr5:43299811-43300072(-)$1	1	92	104	15.7115
).))))((((..	chr6:128327227-128327497(-)$1	1	190	202	20.4230
............	chr1:75730971-75731239(-)$1	1	235	247	19.2692
............	chr11:89996727-89997050(+)$1	1	271	283	24.8461
)))...))))..	chr6:155161272-155161524(+)$1	1	177	189	23.5961
(((........(	chr3:99590763-99591092(+)$1	1	66	78	17.3461
(((...((((..	chr11:90339598-90339869(+)$1	1	201	213	17.3461
..((((((((((	chr4:120984057-120984308(-)$1	1	88	100	15.6153
............	chr15:56424437-56424754(-)$1	1	49	61	16.9615
((((........	chr9:101881307-101881623(+)$1	1	22	34	16.6730
............	chr20:3201832-3202078(+)$1	1	26	38	24.8461
)((.((((((((	chr14:36017347-36017568(-)$1	1	120	132	16.4807
.....(((((((	chr13:75976748-75977006(-)$1	1	0	12	16.4807
((..(((.....	chr17:55730962-55731261(+)$1	1	77	89	16.7692
....))))))))	chr11:102075652-102075934(+)$1	1	234	246	22.5384
(((..(((((..	chr1:167227624-167227874(+)$1	1	84	96	14.5576
((((((((((((	chr14:59954807-59955141(+)$1	1	55	67	14.5576
).)))(((((((	chr13:33825649-33825998(-)$1	1	183	195	16.2884
............	chr6:24246021-24246312(-)$1	1	207	219	16.1923
............	chr2:170563811-170564056(+)$1	1	156	168	17.7307
..))))))))).	chr8:26197657-26197947(+)$1	1	200	212	15.5192
))))).......	chr5:78243811-78244110(-)$1	1	202	214	17.5384
((((((((((..	chr10:79797122-79797412(+)$1	1	40	52	17.3461
))....((((..	chr5:58945067-58945430(-)$1	1	203	215	15.9038
(.((.(((....	chr12:121313608-121313896(-)$1	1	77	89	16.7692
(((...((((((	chr17:42543879-42544105(-)$1	1	56	68	17.1538
....(((((...	chr13:33169161-33169462(+)$1	1	19	31	17.0576
((((((..((..	chr16:66860732-66860986(-)$1	1	4	16	15.9038
(.((((((((((	chr12:70725485-70725802(+)$1	1	262	274	23.0192
.)))...)))))	chr5:95262543-95262838(-)$1	1	243	255	20.4230
).)))))))..)	chr1:21497916-21498186(-)$1	1	63	75	16.7692
.....)))))))	chr13:50783444-50783731(+)$1	1	218	230	19.9423
((((((.(((((	chr20:40239376-40239691(-)$1	1	88	100	17.9230
)))...))).))	chr7:122344113-122344394(-)$1	1	236	248	22.1538
.....))))).)	chr22:28270915-28271177(-)$1	1	177	189	16.4807
.))))))...))	chr1:76059386-76059693(-)$1	1	82	94	16.2884
.......)))))	chr18:59903771-59904059(+)$1	1	242	254	17.9230
)))))......)	chr2:167107769-167108028(-)$1	1	203	215	18.1153
(((((......(	chr4:160205294-160205570(+)$1	1	38	50	15.5192
)...........	chr9:88583493-88583840(+)$1	1	54	66	24.8461
............	chr20:13555230-13555499(-)$1	1	36	48	17.0576
)...........	chr2:9378141-9378430(+)$1	1	209	221	17.2499
(..((.......	chr3:176850194-176850466(-)$1	1	84	96	18.4999
............	chrX:131164082-131164380(+)$1	1	252	264	15.2307
......(((((.	chr17:45708396-45708667(-)$1	1	85	97	15.6153
))))))))...)	chr2:75771722-75771987(-)$1	1	229	241	18.5961
............	chr15:56464601-56464947(-)$1	1	26	38	16.7692

#PSSM
U : 0.49	u : 0.36	G : 0.05	A : 0.03	C : 0.03	
C : 0.30	c : 0.21	G : 0.21	A : 0.07	a : 0.07	g : 0.05	U : 0.03	u : 0.01	
U : 0.57	u : 0.36	a : 0.03	A : 0.01	
U : 0.55	u : 0.36	c : 0.01	A : 0.01	G : 0.01	a : 0.01	
U : 0.44	u : 0.38	C : 0.07	G : 0.03	c : 0.03	A : 0.01	
U : 0.42	u : 0.34	C : 0.07	G : 0.05	g : 0.03	A : 0.01	a : 0.01	c : 0.01	
U : 0.36	u : 0.28	C : 0.11	a : 0.09	G : 0.05	A : 0.03	g : 0.03	
U : 0.44	u : 0.32	C : 0.07	a : 0.05	G : 0.03	A : 0.01	c : 0.01	g : 0.01	
U : 0.38	u : 0.34	C : 0.13	G : 0.03	g : 0.03	c : 0.01	A : 0.01	a : 0.01	
U : 0.57	u : 0.34	g : 0.05	c : 0.01	
U : 0.49	u : 0.38	C : 0.03	g : 0.03	A : 0.01	G : 0.01	
U : 0.57	u : 0.38	c : 0.01	A : 0.01	

#score	934.1153846153845
#seq	52
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_UTR_m2_run2.nuc.txt

#NT
ugugucugugugugug	chr9:138899055-138899277(-)$1	222	68	84	40.8571
ugugugugugugugug	chr6:160526841-160527137(+)$1	296	96	112	44.4285
ugugugugugugugug	chr2:135208253-135208536(+)$1	283	102	118	44.4285
ugugugugugugugug	chr2:61764763-61765000(-)$1	237	86	102	44.4285
ugugugugugugugug	chr12:56991292-56991567(-)$1	275	109	125	44.4285
ugugugugugugugug	chr16:89981293-89981540(+)$1	247	88	104	44.4285
AGUGUGUGUGUGUGUG	chr17:45016068-45016317(+)$1	249	101	117	39.9047
ugugugugugugugug	chr4:144257822-144258102(+)$1	280	79	95	44.4285
ugugugugugugugug	chr16:23478541-23478844(-)$1	303	89	105	44.4285
UGUgugugugugugag	chr14:65569023-65569307(-)$1	284	98	114	39.9047
ugugccugugugugug	chr16:89980273-89980503(+)$1	230	80	96	36.5714
ugugugugugugugug	chr2:36777063-36777351(+)$1	288	121	137	44.4285
ugugugugugugugug	chr19:11664178-11664514(-)$1	336	68	84	44.4285
uguuugugugugugug	chr6:349144-349423(+)$1	279	188	204	40.3809
uguaugugugugugua	chr4:23796920-23797185(-)$1	265	43	59	36.5714
uguaugugugugugua	chr4:23796985-23797252(-)$1	267	110	126	36.5714
ugUGAGCGUGUGUGUG	chr13:26828212-26828513(+)$1	301	124	140	35.6190
ugugucugugugugug	chr9:138899077-138899307(-)$1	230	98	114	40.8571
ugugugugugugugug	chr16:89980847-89981104(+)$1	257	160	176	44.4285
ugugugugugugugug	chr6:31619917-31620248(-)$1	331	112	128	44.4285

#otherMatches

#Struct PSSM
e22a]dddd]gggggg	chr17:75496149-75496442(+)$1	293	99	115	35.3809
=====apppppppa]=	chr9:138899055-138899277(-)$1	222	68	84	40.8571
h]ggggggg]bb]bb]	chr6:160526841-160527137(+)$1	296	96	112	44.4285
}BB}BB}A}A}DDDD}	chr2:135208253-135208536(+)$1	283	102	118	44.4285
$$$a[bb%%%%%%ddd	chr2:61764763-61765000(-)$1	237	86	102	44.4285
^^^^^^^^^^^^^^^^	chr12:56991292-56991567(-)$1	275	109	125	44.4285
FFFFF{CCCKKDDDDg	chr16:89981293-89981540(+)$1	247	88	104	44.4285
mmmmdddd]a22dddd	chr17:45016068-45016317(+)$1	249	101	117	39.9047
llldddd]ffffff]d	chr4:144257822-144258102(+)$1	280	79	95	44.4285
nnnnna]dddd]ccc:	chr16:23478541-23478844(-)$1	303	89	105	44.4285
FFF{CCCLLLCCCKKB	chr14:65569023-65569307(-)$1	284	98	114	39.9047
iiiiiii::::=====	chr16:89980273-89980503(+)$1	230	80	96	36.5714
]ccc:===========	chr2:36777063-36777351(+)$1	288	121	137	44.4285
oooooa22dddd::::	chr19:11664178-11664514(-)$1	336	68	84	44.4285
mmmhhhhhhhh:::::	chr6:349144-349423(+)$1	279	188	204	40.3809
dJJJJJJJJJJJJJJJ	chr4:23796920-23797185(-)$1	265	43	59	36.5714
========oooooo==	chr4:23796985-23797252(-)$1	267	110	126	36.5714
{A{EEEEE{DDDD{A:	chr13:26828212-26828513(+)$1	301	124	140	35.6190
==88888888======	chr9:138899077-138899307(-)$1	230	98	114	40.8571
uuuuuuuuuuuhhhhh	chr16:89980847-89981104(+)$1	257	160	176	44.4285
=[ccc!!bb"""ccc[	chr6:31619917-31620248(-)$1	331	112	128	44.4285

#DB
)..).)))).))))))	chr17:75496149-75496442(+)$1	1	99	115	35.3809
((((((.......).)	chr9:138899055-138899277(-)$1	1	68	84	40.8571
).))))))).)).)).	chr6:160526841-160527137(+)$1	1	96	112	44.4285
.)).)).).).)))).	chr2:135208253-135208536(+)$1	1	102	118	44.4285
...(.((......(((	chr2:61764763-61765000(-)$1	1	86	102	44.4285
................	chr12:56991292-56991567(-)$1	1	109	125	44.4285
(((((.(((..(((((	chr16:89981293-89981540(+)$1	1	88	104	44.4285
....)))).)..))))	chr17:45016068-45016317(+)$1	1	101	117	39.9047
...)))).)))))).)	chr4:144257822-144258102(+)$1	1	79	95	44.4285
.....).)))).))).	chr16:23478541-23478844(-)$1	1	89	105	44.4285
(((.(((...(((..(	chr14:65569023-65569307(-)$1	1	98	114	39.9047
)))))))....(((((	chr16:89980273-89980503(+)$1	1	80	96	36.5714
.))).(((((((((((	chr2:36777063-36777351(+)$1	1	121	137	44.4285
.....)..))))....	chr19:11664178-11664514(-)$1	1	68	84	44.4285
...)))))))).....	chr6:349144-349423(+)$1	1	188	204	40.3809
)(((((((((((((((	chr4:23796920-23797185(-)$1	1	43	59	36.5714
((((((((......))	chr4:23796985-23797252(-)$1	1	110	126	36.5714
.(.(((((.((((.(.	chr13:26828212-26828513(+)$1	1	124	140	35.6190
))........))))))	chr9:138899077-138899307(-)$1	1	98	114	40.8571
...........)))))	chr16:89980847-89981104(+)$1	1	160	176	44.4285
(.(((..((...(((.	chr6:31619917-31620248(-)$1	1	112	128	44.4285

#PSSM
u : 0.85	U : 0.09	A : 0.04	
g : 0.85	G : 0.14	
u : 0.80	U : 0.14	A : 0.04	
g : 0.71	G : 0.14	a : 0.09	u : 0.04	
u : 0.80	U : 0.09	c : 0.04	A : 0.04	
g : 0.71	G : 0.14	c : 0.14	
u : 0.85	U : 0.09	C : 0.04	
g : 0.85	G : 0.14	
u : 0.85	U : 0.09	A : 0.04	
g : 0.85	G : 0.14	
u : 0.85	U : 0.14	
g : 0.85	G : 0.14	
u : 0.85	U : 0.14	
g : 0.85	G : 0.14	
u : 0.80	U : 0.14	a : 0.04	
g : 0.76	G : 0.14	a : 0.09	

#score	871.3333333333335
#seq	21
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_UTR_m1_run1.nuc.txt

#NT
ACCUGCC	chrX:65382409-65382654(+)$1	245	84	91	13.0588
CCCUCCC	chr1:167381262-167381526(+)$1	264	22	29	13.2058
cccugcc	chr20:48808610-48808851(+)$1	241	18	25	16.9558
GCCUGCC	chr14:21464845-21465100(+)$1	255	237	244	13.2794
CCUUGCC	chr2:103335222-103335490(-)$1	268	194	201	12.3235
CACUGCC	chr2:103334976-103335289(-)$1	313	146	153	13.1323
CACUGCC	chr6:43753093-43753338(+)$1	245	48	55	13.1323
CCCUUCC	chr17:78184609-78184869(-)$1	260	50	57	13.0588
CCCCGCC	chr6:91296537-91296742(-)$1	205	5	12	12.9117
CCCUGCC	chr16:28222644-28222910(-)$1	266	55	62	16.9558
CCCUGCC	chr11:67810750-67810984(+)$1	234	62	69	16.9558
CCCUUCC	chr18:43678114-43678357(-)$1	243	197	204	13.0588
UCCUGCC	chr5:32174141-32174402(-)$1	261	61	68	13.0588
CUCUGCC	chr19:10427102-10427335(-)$1	233	65	72	13.2794
CCCUGCC	chr19:2809487-2809756(+)$1	269	118	125	16.9558
CCCUGCC	chr14:94545784-94546102(-)$1	318	193	200	16.9558
CCCUCCC	chr16:2757916-2758183(+)$1	267	189	196	13.2058
CCCUGCG	chr15:41247625-41247880(+)$1	255	139	146	12.3970
CCCUGCC	chr16:1470322-1470592(-)$1	270	57	64	16.9558
CCCUCCC	chr1:235491225-235491473(-)$1	248	181	188	13.2058
CCCUUCC	chr6:30584517-30584745(-)$1	228	113	120	13.0588
CCCAGCC	chr8:128748598-128748837(+)$1	239	17	24	12.9852
GCCUGCC	chr15:90771180-90771433(+)$1	253	8	15	13.2794
CCCUGCA	chr10:82278016-82278268(+)$1	252	31	38	12.5441
CCCUGCC	chr19:10461380-10461622(-)$1	242	126	133	16.9558
CACUGCC	chr17:40828696-40828938(-)$1	242	44	51	13.1323
GCCUGCC	chr21:45731904-45732156(+)$1	252	42	49	13.2794
CCCUUCC	chr1:27480637-27480904(-)$1	267	126	133	13.0588
CCCUACC	chr6:31797626-31797877(+)$1	251	2	9	12.8382
CCCUGCC	chr11:67810739-67810944(+)$1	205	73	80	16.9558
CCCUGCC	chr19:12903566-12903796(+)$1	230	68	75	16.9558
CCCAGCC	chr6:36936370-36936646(-)$1	276	79	86	12.9852
CCCUGCC	chr7:150068433-150068706(+)$1	273	152	159	16.9558
CUCUGCC	chr14:65543144-65543382(-)$1	238	98	105	13.2794
CUCUGCC	chr8:48920957-48921219(+)$1	262	117	124	13.2794
CUCUGCC	chr11:66391889-66392120(+)$1	231	0	7	13.2794
CCCCGCC	chr1:40041592-40041829(-)$1	237	30	37	12.9117
CGCUGCC	chr17:79479643-79479852(-)$1	209	36	43	12.9852
cccugcc	chr1:1334205-1334428(-)$1	223	139	146	16.9558
GCCUGCC	chr16:2203579-2203823(+)$1	244	235	242	13.2794
GCCUGCC	chr17:80401361-80401638(-)$1	277	120	127	13.2794
CCCUGCc	chr19:18390884-18391094(-)$1	210	194	201	16.9558
CUCUGCC	chr12:104851030-104851288(+)$1	258	54	61	13.2794
ACCUGCC	chr2:159498938-159499192(+)$1	254	211	218	13.0588
CCCUGGC	chr2:203242064-203242341(+)$1	277	154	161	12.1764
ACCUGCC	chr16:15729747-15729996(-)$1	249	221	228	13.0588
CCUUGCC	chr3:5025287-5025519(+)$1	232	1	8	12.3235
UCCUGCC	chr2:86709624-86709895(+)$1	271	213	220	13.0588
CACUGCC	chr10:75535297-75535545(+)$1	248	58	65	13.1323
CCCUGCA	chr17:27233264-27233533(-)$1	269	84	91	12.5441
CCCUCCC	chr1:59249179-59249439(-)$1	260	248	255	13.2058
UCCUGCC	chr15:76135639-76135899(+)$1	260	141	148	13.0588
CCCGGCC	chr7:39990046-39990260(+)$1	214	71	78	12.9117
CCCGGCC	chr12:98909538-98909782(-)$1	244	47	54	12.9117
CUCUGCC	chr15:91303967-91304222(+)$1	255	72	79	13.2794
CCCAGCC	chr4:130014505-130014770(-)$1	265	101	108	12.9852
CCCGGCC	chr12:72056807-72057072(-)$1	265	67	74	12.9117
CCCUGCU	chr16:89627021-89627248(+)$1	227	30	37	12.3970
CCCUGCA	chr5:68466995-68467298(+)$1	303	145	152	12.5441
CCCUGCC	chr11:57080579-57080823(-)$1	244	7	14	16.9558
GCCUGCC	chr22:22313811-22314075(-)$1	264	133	140	13.2794
CCCAGCC	chr17:76203107-76203342(+)$1	235	101	108	12.9852
CGCUGCC	chr2:74756503-74756726(-)$1	223	213	220	12.9852
CCCUCCC	chr11:18416053-18416290(+)$1	237	35	42	13.2058
CCCUCCC	chr19:45971492-45971733(+)$1	241	63	70	13.2058
CCCCGCC	chr5:126366053-126366319(-)$1	266	20	27	12.9117
CCAUGCC	chr3:9743511-9743768(+)$1	257	209	216	12.2499

#otherMatches

#Struct PSSM
IIII{II	chrX:153195404-153195738(-)$1	334	18	25	12.1764
$$$$$bb	chrX:65382409-65382654(+)$1	245	84	91	13.0588
EEE::::	chr1:167381262-167381526(+)$1	264	22	29	13.2058
e!!eeee	chr20:48808610-48808851(+)$1	241	18	25	16.9558
DDDDDDD	chr14:21464845-21465100(+)$1	255	237	244	13.2794
ffffnnn	chr2:103335222-103335490(-)$1	268	194	201	12.3235
xxxxxxx	chr2:103334976-103335289(-)$1	313	146	153	13.1323
d:bb[ee	chr6:43753093-43753338(+)$1	245	48	55	13.1323
wwwwwww	chr17:78184609-78184869(-)$1	260	50	57	13.0588
dda[ccc	chr6:91296537-91296742(-)$1	205	5	12	12.9117
====[dd	chr16:28222644-28222910(-)$1	266	55	62	16.9558
dgggggg	chr11:67810750-67810984(+)$1	234	62	69	16.9558
ddppppp	chr18:43678114-43678357(-)$1	243	197	204	13.0588
ggggggg	chr5:32174141-32174402(-)$1	261	61	68	13.0588
a!!bbbb	chr19:10427102-10427335(-)$1	233	65	72	13.2794
dd]bb::	chr19:2809487-2809756(+)$1	269	118	125	16.9558
c]ccccc	chr14:94545784-94546102(-)$1	318	193	200	16.9558
::BB}DD	chr16:2757916-2758183(+)$1	267	189	196	13.2058
ff22a]d	chr15:41247625-41247880(+)$1	255	139	146	12.3970
]dddd::	chr16:1470322-1470592(-)$1	270	57	64	16.9558
ggg::FF	chr1:235491225-235491473(-)$1	248	181	188	13.2058
cc]eeee	chr6:30584517-30584745(-)$1	228	113	120	13.0588
c22gggg	chr8:128748598-128748837(+)$1	239	17	24	12.9852
E{EEEEE	chr15:90771180-90771433(+)$1	253	8	15	13.2794
#gggggg	chr10:82278016-82278268(+)$1	252	31	38	12.5441
ffhhhhh	chr19:10461380-10461622(-)$1	242	126	133	16.9558
::::ddd	chr17:40828696-40828938(-)$1	242	44	51	13.1323
fffcccb	chr21:45731904-45732156(+)$1	252	42	49	13.2794
qqqqccc	chr1:27480637-27480904(-)$1	267	126	133	13.0588
ffff[ee	chr6:31797626-31797877(+)$1	251	2	9	12.8382
dgggggg	chr11:67810739-67810944(+)$1	205	73	80	16.9558
ee]bbdd	chr19:12903566-12903796(+)$1	230	68	75	16.9558
eeemmmm	chr6:36936370-36936646(-)$1	276	79	86	12.9852
qqqqqqq	chr7:150068433-150068706(+)$1	273	152	159	16.9558
qqggggg	chr14:65543144-65543382(-)$1	238	98	105	13.2794
22cccbb	chr8:48920957-48921219(+)$1	262	117	124	13.2794
:::::::	chr11:66391889-66392120(+)$1	231	0	7	13.2794
llccc]e	chr1:40041592-40041829(-)$1	237	30	37	12.9117
{DDDDKK	chr17:79479643-79479852(-)$1	209	36	43	12.9852
ZZZDDDD	chr1:1334205-1334428(-)$1	223	139	146	16.9558
lccc]cc	chr16:2203579-2203823(+)$1	244	235	242	13.2794
[======	chr17:80401361-80401638(-)$1	277	120	127	13.2794
:::::::	chr19:18390884-18391094(-)$1	210	194	201	16.9558
b]dddd]	chr12:104851030-104851288(+)$1	258	54	61	13.2794
DDD}DDD	chr2:159498938-159499192(+)$1	254	211	218	13.0588
b[hhhhh	chr2:203242064-203242341(+)$1	277	154	161	12.1764
DDD}CCC	chr16:15729747-15729996(-)$1	249	221	228	13.0588
::::bb[	chr3:5025287-5025519(+)$1	232	1	8	12.3235
chhhhhh	chr2:86709624-86709895(+)$1	271	213	220	13.0588
d]ccccc	chr10:75535297-75535545(+)$1	248	58	65	13.1323
bbdddd:	chr17:27233264-27233533(-)$1	269	84	91	12.5441
YYAFFFF	chr1:59249179-59249439(-)$1	260	248	255	13.2058
c]hhhhh	chr15:76135639-76135899(+)$1	260	141	148	13.0588
ggg[eee	chr7:39990046-39990260(+)$1	214	71	78	12.9117
JJJJJJJ	chr12:98909538-98909782(-)$1	244	47	54	12.9117
::::ccc	chr15:91303967-91304222(+)$1	255	72	79	13.2794
333eeee	chr4:130014505-130014770(-)$1	265	101	108	12.9852
iiiiii!	chr12:72056807-72057072(-)$1	265	67	74	12.9117
b!!ccc!	chr16:89627021-89627248(+)$1	227	30	37	12.3970
:::::dd	chr5:68466995-68467298(+)$1	303	145	152	12.5441
eeeeebb	chr11:57080579-57080823(-)$1	244	7	14	16.9558
cc::ggg	chr22:22313811-22314075(-)$1	264	133	140	13.2794
gggggg2	chr17:76203107-76203342(+)$1	235	101	108	12.9852
ndddddd	chr2:74756503-74756726(-)$1	223	213	220	12.9852
eeeee!!	chr11:18416053-18416290(+)$1	237	35	42	13.2058
LLLDDDD	chr19:45971492-45971733(+)$1	241	63	70	13.2058
dd:::::	chr5:126366053-126366319(-)$1	266	20	27	12.9117
CC:::gg	chr3:9743511-9743768(+)$1	257	209	216	12.2499

#DB
((((.((	chrX:153195404-153195738(-)$1	1	18	25	12.1764
.....((	chrX:65382409-65382654(+)$1	1	84	91	13.0588
(((....	chr1:167381262-167381526(+)$1	1	22	29	13.2058
(..((((	chr20:48808610-48808851(+)$1	1	18	25	16.9558
)))))))	chr14:21464845-21465100(+)$1	1	237	244	13.2794
((((...	chr2:103335222-103335490(-)$1	1	194	201	12.3235
.......	chr2:103334976-103335289(-)$1	1	146	153	13.1323
).((.((	chr6:43753093-43753338(+)$1	1	48	55	13.1323
.......	chr17:78184609-78184869(-)$1	1	50	57	13.0588
(((.(((	chr6:91296537-91296742(-)$1	1	5	12	12.9117
((((.((	chr16:28222644-28222910(-)$1	1	55	62	16.9558
)))))))	chr11:67810750-67810984(+)$1	1	62	69	16.9558
((.....	chr18:43678114-43678357(-)$1	1	197	204	13.0588
)))))))	chr5:32174141-32174402(-)$1	1	61	68	13.0588
(..((((	chr19:10427102-10427335(-)$1	1	65	72	13.2794
)).))..	chr19:2809487-2809756(+)$1	1	118	125	16.9558
).)))))	chr14:94545784-94546102(-)$1	1	193	200	16.9558
..)).))	chr16:2757916-2758183(+)$1	1	189	196	13.2058
))..).)	chr15:41247625-41247880(+)$1	1	139	146	12.3970
.))))..	chr16:1470322-1470592(-)$1	1	57	64	16.9558
)))..))	chr1:235491225-235491473(-)$1	1	181	188	13.2058
)).))))	chr6:30584517-30584745(-)$1	1	113	120	13.0588
)..))))	chr8:128748598-128748837(+)$1	1	17	24	12.9852
(.(((((	chr15:90771180-90771433(+)$1	1	8	15	13.2794
.((((((	chr10:82278016-82278268(+)$1	1	31	38	12.5441
(((((((	chr19:10461380-10461622(-)$1	1	126	133	16.9558
....(((	chr17:40828696-40828938(-)$1	1	44	51	13.1323
(((((((	chr21:45731904-45732156(+)$1	1	42	49	13.2794
....)))	chr1:27480637-27480904(-)$1	1	126	133	13.0588
((((.((	chr6:31797626-31797877(+)$1	1	2	9	12.8382
)))))))	chr11:67810739-67810944(+)$1	1	73	80	16.9558
)).))))	chr19:12903566-12903796(+)$1	1	68	75	16.9558
(((....	chr6:36936370-36936646(-)$1	1	79	86	12.9852
.......	chr7:150068433-150068706(+)$1	1	152	159	16.9558
..)))))	chr14:65543144-65543382(-)$1	1	98	105	13.2794
..)))))	chr8:48920957-48921219(+)$1	1	117	124	13.2794
.......	chr11:66391889-66392120(+)$1	1	0	7	13.2794
..))).)	chr1:40041592-40041829(-)$1	1	30	37	12.9117
.((((..	chr17:79479643-79479852(-)$1	1	36	43	12.9852
...))))	chr1:1334205-1334428(-)$1	1	139	146	16.9558
.))).))	chr16:2203579-2203823(+)$1	1	235	242	13.2794
.((((((	chr17:80401361-80401638(-)$1	1	120	127	13.2794
.......	chr19:18390884-18391094(-)$1	1	194	201	16.9558
).)))).	chr12:104851030-104851288(+)$1	1	54	61	13.2794
))).)))	chr2:159498938-159499192(+)$1	1	211	218	13.0588
(.(((((	chr2:203242064-203242341(+)$1	1	154	161	12.1764
))).)))	chr16:15729747-15729996(-)$1	1	221	228	13.0588
....((.	chr3:5025287-5025519(+)$1	1	1	8	12.3235
)))))))	chr2:86709624-86709895(+)$1	1	213	220	13.0588
).)))))	chr10:75535297-75535545(+)$1	1	58	65	13.1323
)))))).	chr17:27233264-27233533(-)$1	1	84	91	12.5441
..)))))	chr1:59249179-59249439(-)$1	1	248	255	13.2058
).)))))	chr15:76135639-76135899(+)$1	1	141	148	13.0588
(((.(((	chr7:39990046-39990260(+)$1	1	71	78	12.9117
(((((((	chr12:98909538-98909782(-)$1	1	47	54	12.9117
....(((	chr15:91303967-91304222(+)$1	1	72	79	13.2794
...))))	chr4:130014505-130014770(-)$1	1	101	108	12.9852
((((((.	chr12:72056807-72057072(-)$1	1	67	74	12.9117
(..(((.	chr16:89627021-89627248(+)$1	1	30	37	12.3970
.....((	chr5:68466995-68467298(+)$1	1	145	152	12.5441
(((((((	chr11:57080579-57080823(-)$1	1	7	14	16.9558
))..(((	chr22:22313811-22314075(-)$1	1	133	140	13.2794
)))))).	chr17:76203107-76203342(+)$1	1	101	108	12.9852
.))))))	chr2:74756503-74756726(-)$1	1	213	220	12.9852
(((((..	chr11:18416053-18416290(+)$1	1	35	42	13.2058
...((((	chr19:45971492-45971733(+)$1	1	63	70	13.2058
)).....	chr5:126366053-126366319(-)$1	1	20	27	12.9117
))...((	chr3:9743511-9743768(+)$1	1	209	216	12.2499

#PSSM
C : 0.79	G : 0.08	A : 0.04	U : 0.04	c : 0.02	
C : 0.79	U : 0.08	A : 0.05	c : 0.02	G : 0.02	
C : 0.92	c : 0.02	U : 0.02	A : 0.01	
U : 0.82	A : 0.05	C : 0.04	G : 0.04	u : 0.02	
G : 0.80	C : 0.08	U : 0.05	g : 0.02	A : 0.01	
C : 0.94	c : 0.02	U : 0.01	G : 0.01	
C : 0.88	c : 0.04	A : 0.04	G : 0.01	U : 0.01	

#score	934.029411764704
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_UTR_m2_run1.nuc.txt

#NT
UGUUU	chr7:66420498-66420778(+)$1	280	24	29	14.9999
UGUUU	chr12:46752289-46752524(-)$1	235	216	221	14.9999
UGUUU	chr18:9134183-9134436(+)$1	253	162	167	14.9999
UGUUU	chr11:72547738-72547988(-)$1	250	199	204	14.9999
UGUUU	chr6:8079920-8080185(-)$1	265	98	103	14.9999
UGUUU	chr9:96441615-96441872(+)$1	257	148	153	14.9999
UGUUU	chr7:151832285-151832577(-)$1	292	51	56	14.9999
UGUUU	chr6:136579638-136579888(-)$1	250	172	177	14.9999
UGUUU	chr3:184052967-184053225(+)$1	258	218	223	14.9999
uguuu	chr1:29474325-29474573(-)$1	248	198	203	14.9999
UGUUU	chr3:170114395-170114694(+)$1	299	146	151	14.9999
UGUUU	chr6:71570564-71570824(+)$1	260	238	243	14.9999
UGUUU	chr12:122269449-122269670(+)$1	221	22	27	14.9999
UGUUU	chr1:52552452-52552691(+)$1	239	109	114	14.9999
UGUUU	chr19:49611527-49611775(+)$1	248	197	202	14.9999
UGUUU	chr1:211920544-211920803(-)$1	259	180	185	14.9999
UGUUU	chr9:140137967-140138246(+)$1	279	133	138	14.9999
UGUUU	chr2:20449837-20450116(-)$1	279	124	129	14.9999
UGUUU	chr1:161933289-161933590(+)$1	301	38	43	14.9999
UGUUU	chr12:39686945-39687229(-)$1	284	245	250	14.9999
UGUUU	chr6:18225586-18225806(-)$1	220	23	28	14.9999
UGUUU	chr15:49171421-49171681(+)$1	260	100	105	14.9999
UGUUU	chr3:128198196-128198445(-)$1	249	18	23	14.9999
UGUUU	chr20:5171659-5171943(+)$1	284	21	26	14.9999
uguuu	chr1:115312025-115312303(-)$1	278	97	102	14.9999
UGUUU	chr2:159537390-159537692(+)$1	302	184	189	14.9999
UGUUU	chr9:139306839-139307081(+)$1	242	35	40	14.9999
uguuu	chr1:198725361-198725625(+)$1	264	228	233	14.9999
UGUUU	chr9:86583033-86583327(-)$1	294	36	41	14.9999
UGUUU	chr7:135612416-135612675(-)$1	259	6	11	14.9999
UGUUU	chr12:39687121-39687374(-)$1	253	25	30	14.9999
UGUUU	chr7:66274624-66274868(+)$1	244	175	180	14.9999
UGUUU	chr10:72181706-72181981(+)$1	275	97	102	14.9999
UGUUU	chr3:149679681-149679947(+)$1	266	63	68	14.9999
UGUUU	chrX:133562570-133562898(+)$1	328	254	259	14.9999
UGUUU	chr3:42589373-42589613(-)$1	240	143	148	14.9999
UGUUU	chr12:19528779-19529017(+)$1	238	0	5	14.9999
uguuu	chr22:39414932-39415235(+)$1	303	242	247	14.9999
UGUUU	chr22:47075373-47075661(+)$1	288	55	60	14.9999
UGUUU	chr17:36885818-36886078(+)$1	260	205	210	14.9999
UGUUU	chr8:124260723-124260973(-)$1	250	12	17	14.9999
UGUUU	chr1:85112779-85113024(-)$1	245	20	25	14.9999
UGUUU	chr6:47592181-47592418(+)$1	237	24	29	14.9999
uguuu	chr6:43753807-43754060(+)$1	253	89	94	14.9999
UGUUU	chr22:31835276-31835500(-)$1	224	164	169	14.9999
UGUUU	chr5:139007083-139007310(+)$1	227	36	41	14.9999
UGUUU	chr1:233807732-233807983(+)$1	251	91	96	14.9999
UGUUU	chr17:79876123-79876368(-)$1	245	163	168	14.9999
UGUUU	chr12:98941659-98941915(+)$1	256	147	152	14.9999
UGUUU	chr13:23902978-23903250(-)$1	272	2	7	14.9999
UGUUU	chr20:48740716-48740942(-)$1	226	91	96	14.9999
UGUUU	chr2:198351235-198351479(-)$1	244	159	164	14.9999
UGUUU	chr4:125585560-125585813(-)$1	253	181	186	14.9999
UGUUU	chr2:20232322-20232610(-)$1	288	133	138	14.9999
UGUUU	chr22:22114621-22114873(-)$1	252	23	28	14.9999
UGUUU	chr4:187509041-187509299(-)$1	258	217	222	14.9999
UGUUU	chr1:31342499-31342766(-)$1	267	206	211	14.9999
UGUUU	chr12:123776167-123776448(-)$1	281	126	131	14.9999
UGUUU	chr13:111372271-111372528(+)$1	257	158	163	14.9999
UGUUU	chr9:4860720-4860949(+)$1	229	195	200	14.9999
UGUUU	chr8:126034301-126034526(+)$1	225	21	26	14.9999
UGUUU	chr7:8126897-8127182(+)$1	285	12	17	14.9999
UGUUU	chr17:74730634-74730920(-)$1	286	224	229	14.9999
UGUUU	chr12:49412703-49412986(-)$1	283	100	105	14.9999
UGUUU	chr7:105730978-105731205(-)$1	227	132	137	14.9999
UGUUU	chr3:167726551-167726772(-)$1	221	78	83	14.9999
UGUUU	chr12:132284014-132284257(+)$1	243	211	216	14.9999
UGUUU	chr6:163994334-163994615(+)$1	281	200	205	14.9999

#otherMatches

#Struct PSSM
{GGGG	chr16:18803092-18803335(-)$1	243	92	97	14.9999
ddnnn	chr7:66420498-66420778(+)$1	280	24	29	14.9999
iiiii	chr12:46752289-46752524(-)$1	235	216	221	14.9999
offff	chr18:9134183-9134436(+)$1	253	162	167	14.9999
IIIII	chr11:72547738-72547988(-)$1	250	199	204	14.9999
mmmcc	chr6:8079920-8080185(-)$1	265	98	103	14.9999
fff88	chr9:96441615-96441872(+)$1	257	148	153	14.9999
[dddd	chr7:151832285-151832577(-)$1	292	51	56	14.9999
=====	chr6:136579638-136579888(-)$1	250	172	177	14.9999
]bb44	chr3:184052967-184053225(+)$1	258	218	223	14.9999
GG???	chr1:29474325-29474573(-)$1	248	198	203	14.9999
eeeee	chr3:170114395-170114694(+)$1	299	146	151	14.9999
JJJJJ	chr6:71570564-71570824(+)$1	260	238	243	14.9999
ggggg	chr12:122269449-122269670(+)$1	221	22	27	14.9999
ggooo	chr1:52552452-52552691(+)$1	239	109	114	14.9999
F}GGG	chr19:49611527-49611775(+)$1	248	197	202	14.9999
=====	chr1:211920544-211920803(-)$1	259	180	185	14.9999
dd]ii	chr9:140137967-140138246(+)$1	279	133	138	14.9999
:::ff	chr2:20449837-20450116(-)$1	279	124	129	14.9999
fffff	chr1:161933289-161933590(+)$1	301	38	43	14.9999
[dddd	chr12:39686945-39687229(-)$1	284	245	250	14.9999
qqqhh	chr6:18225586-18225806(-)$1	220	23	28	14.9999
ddd%%	chr15:49171421-49171681(+)$1	260	100	105	14.9999
B::::	chr3:128198196-128198445(-)$1	249	18	23	14.9999
EDDDD	chr20:5171659-5171943(+)$1	284	21	26	14.9999
ooooo	chr1:115312025-115312303(-)$1	278	97	102	14.9999
d::::	chr2:159537390-159537692(+)$1	302	184	189	14.9999
fffff	chr9:139306839-139307081(+)$1	242	35	40	14.9999
4444d	chr1:198725361-198725625(+)$1	264	228	233	14.9999
c[fff	chr9:86583033-86583327(-)$1	294	36	41	14.9999
:::::	chr7:135612416-135612675(-)$1	259	6	11	14.9999
hhhhh	chr12:39687121-39687374(-)$1	253	25	30	14.9999
ggggc	chr7:66274624-66274868(+)$1	244	175	180	14.9999
GGGGO	chr10:72181706-72181981(+)$1	275	97	102	14.9999
:dddd	chr3:149679681-149679947(+)$1	266	63	68	14.9999
xxxxx	chrX:133562570-133562898(+)$1	328	254	259	14.9999
)))))	chr3:42589373-42589613(-)$1	240	143	148	14.9999
:::::	chr12:19528779-19529017(+)$1	238	0	5	14.9999
^^^^^	chr22:39414932-39415235(+)$1	303	242	247	14.9999
fff::	chr22:47075373-47075661(+)$1	288	55	60	14.9999
ii333	chr17:36885818-36886078(+)$1	260	205	210	14.9999
JJJJe	chr8:124260723-124260973(-)$1	250	12	17	14.9999
{DDDD	chr1:85112779-85113024(-)$1	245	20	25	14.9999
ggggg	chr6:47592181-47592418(+)$1	237	24	29	14.9999
eee22	chr6:43753807-43754060(+)$1	253	89	94	14.9999
eeeef	chr22:31835276-31835500(-)$1	224	164	169	14.9999
cc!!c	chr5:139007083-139007310(+)$1	227	36	41	14.9999
mmhhh	chr1:233807732-233807983(+)$1	251	91	96	14.9999
dddd[	chr17:79876123-79876368(-)$1	245	163	168	14.9999
JJJJJ	chr12:98941659-98941915(+)$1	256	147	152	14.9999
GGGGG	chr13:23902978-23903250(-)$1	272	2	7	14.9999
####f	chr20:48740716-48740942(-)$1	226	91	96	14.9999
d]ddd	chr2:198351235-198351479(-)$1	244	159	164	14.9999
leeee	chr4:125585560-125585813(-)$1	253	181	186	14.9999
fff!!	chr2:20232322-20232610(-)$1	288	133	138	14.9999
ddooo	chr22:22114621-22114873(-)$1	252	23	28	14.9999
FFFFF	chr4:187509041-187509299(-)$1	258	217	222	14.9999
GGGGG	chr1:31342499-31342766(-)$1	267	206	211	14.9999
:GGGG	chr12:123776167-123776448(-)$1	281	126	131	14.9999
^^^^^	chr13:111372271-111372528(+)$1	257	158	163	14.9999
hhhmm	chr9:4860720-4860949(+)$1	229	195	200	14.9999
ddd!!	chr8:126034301-126034526(+)$1	225	21	26	14.9999
gggll	chr7:8126897-8127182(+)$1	285	12	17	14.9999
hhhrr	chr17:74730634-74730920(-)$1	286	224	229	14.9999
ee"""	chr12:49412703-49412986(-)$1	283	100	105	14.9999
ee::H	chr7:105730978-105731205(-)$1	227	132	137	14.9999
GGGG{	chr3:167726551-167726772(-)$1	221	78	83	14.9999
EEEE~	chr12:132284014-132284257(+)$1	243	211	216	14.9999
=====	chr6:163994334-163994615(+)$1	281	200	205	14.9999

#DB
.((((	chr16:18803092-18803335(-)$1	1	92	97	14.9999
((...	chr7:66420498-66420778(+)$1	1	24	29	14.9999
)))))	chr12:46752289-46752524(-)$1	1	216	221	14.9999
.))))	chr18:9134183-9134436(+)$1	1	162	167	14.9999
)))))	chr11:72547738-72547988(-)$1	1	199	204	14.9999
...))	chr6:8079920-8080185(-)$1	1	98	103	14.9999
)))..	chr9:96441615-96441872(+)$1	1	148	153	14.9999
.((((	chr7:151832285-151832577(-)$1	1	51	56	14.9999
)))))	chr6:136579638-136579888(-)$1	1	172	177	14.9999
.))..	chr3:184052967-184053225(+)$1	1	218	223	14.9999
))...	chr1:29474325-29474573(-)$1	1	198	203	14.9999
)))))	chr3:170114395-170114694(+)$1	1	146	151	14.9999
)))))	chr6:71570564-71570824(+)$1	1	238	243	14.9999
(((((	chr12:122269449-122269670(+)$1	1	22	27	14.9999
((...	chr1:52552452-52552691(+)$1	1	109	114	14.9999
).)))	chr19:49611527-49611775(+)$1	1	197	202	14.9999
)))))	chr1:211920544-211920803(-)$1	1	180	185	14.9999
)).))	chr9:140137967-140138246(+)$1	1	133	138	14.9999
...((	chr2:20449837-20450116(-)$1	1	124	129	14.9999
)))))	chr1:161933289-161933590(+)$1	1	38	43	14.9999
.((((	chr12:39686945-39687229(-)$1	1	245	250	14.9999
...))	chr6:18225586-18225806(-)$1	1	23	28	14.9999
(((..	chr15:49171421-49171681(+)$1	1	100	105	14.9999
(....	chr3:128198196-128198445(-)$1	1	18	23	14.9999
(((((	chr20:5171659-5171943(+)$1	1	21	26	14.9999
.....	chr1:115312025-115312303(-)$1	1	97	102	14.9999
)....	chr2:159537390-159537692(+)$1	1	184	189	14.9999
(((((	chr9:139306839-139307081(+)$1	1	35	40	14.9999
....)	chr1:198725361-198725625(+)$1	1	228	233	14.9999
(.(((	chr9:86583033-86583327(-)$1	1	36	41	14.9999
.....	chr7:135612416-135612675(-)$1	1	6	11	14.9999
(((((	chr12:39687121-39687374(-)$1	1	25	30	14.9999
)))))	chr7:66274624-66274868(+)$1	1	175	180	14.9999
((((.	chr10:72181706-72181981(+)$1	1	97	102	14.9999
.((((	chr3:149679681-149679947(+)$1	1	63	68	14.9999
.....	chrX:133562570-133562898(+)$1	1	254	259	14.9999
.....	chr3:42589373-42589613(-)$1	1	143	148	14.9999
.....	chr12:19528779-19529017(+)$1	1	0	5	14.9999
.....	chr22:39414932-39415235(+)$1	1	242	247	14.9999
)))..	chr22:47075373-47075661(+)$1	1	55	60	14.9999
))...	chr17:36885818-36886078(+)$1	1	205	210	14.9999
(((((	chr8:124260723-124260973(-)$1	1	12	17	14.9999
.((((	chr1:85112779-85113024(-)$1	1	20	25	14.9999
)))))	chr6:47592181-47592418(+)$1	1	24	29	14.9999
)))..	chr6:43753807-43754060(+)$1	1	89	94	14.9999
)))))	chr22:31835276-31835500(-)$1	1	164	169	14.9999
((..(	chr5:139007083-139007310(+)$1	1	36	41	14.9999
..)))	chr1:233807732-233807983(+)$1	1	91	96	14.9999
((((.	chr17:79876123-79876368(-)$1	1	163	168	14.9999
)))))	chr12:98941659-98941915(+)$1	1	147	152	14.9999
(((((	chr13:23902978-23903250(-)$1	1	2	7	14.9999
....(	chr20:48740716-48740942(-)$1	1	91	96	14.9999
).)))	chr2:198351235-198351479(-)$1	1	159	164	14.9999
.))))	chr4:125585560-125585813(-)$1	1	181	186	14.9999
(((..	chr2:20232322-20232610(-)$1	1	133	138	14.9999
((...	chr22:22114621-22114873(-)$1	1	23	28	14.9999
)))))	chr4:187509041-187509299(-)$1	1	217	222	14.9999
)))))	chr1:31342499-31342766(-)$1	1	206	211	14.9999
.))))	chr12:123776167-123776448(-)$1	1	126	131	14.9999
.....	chr13:111372271-111372528(+)$1	1	158	163	14.9999
(((..	chr9:4860720-4860949(+)$1	1	195	200	14.9999
(((..	chr8:126034301-126034526(+)$1	1	21	26	14.9999
(((..	chr7:8126897-8127182(+)$1	1	12	17	14.9999
(((..	chr17:74730634-74730920(-)$1	1	224	229	14.9999
((...	chr12:49412703-49412986(-)$1	1	100	105	14.9999
))..)	chr7:105730978-105731205(-)$1	1	132	137	14.9999
((((.	chr3:167726551-167726772(-)$1	1	78	83	14.9999
)))).	chr12:132284014-132284257(+)$1	1	211	216	14.9999
)))))	chr6:163994334-163994615(+)$1	1	200	205	14.9999

#PSSM
U : 0.92	u : 0.07	
G : 0.92	g : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	

#score	1034.9999999999995
#seq	69
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_transcript_m1_run2.nuc.txt

#NT
gcugguccaagugcagugguguuuacaacuaauuaaucacaaccauuuacagauguaguuguuccuucuccacucccacugcuucacuugacuagccuuucaaaacaaa	chr11:107955587-107955826(+)$1	239	53	162	249.8571
gcuggucugacugcagugguguuuacaacuagcugaucacaacuacuuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagacuuaaaaaaaaga	chrX:41175697-41175939(+)$1	242	44	153	251.9285
ggcuggucccauacagugguguuuacaacuaauugaucacaaccaguuacagacuucuuuguuucuucuccacucccacugcuucacuugacuagccCuaauaauaaua	chr4:41305155-41305370(-)$1	215	16	125	223.1428
gcuggucugagugcagugguguuuacaccuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacagcuucacuugacuagccuuAAAAAGAUAA	chr7:155978738-155978974(-)$1	236	58	167	264.2142
gcucguccaagugcggugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuuuuccauucccacugcuucacuugacuagcGGAAAGAAAAGAA	chr22:42043996-42044216(-)$1	220	23	132	244.0714
gcuggucugaguacagugguguuuacagcuaaaugaucacaaccacuuacauauuucuuuguuccuucuuuacucccacugcuucacuugacuagccuuAAAAAAGAAA	chr12:123252604-123252830(+)$1	226	42	151	247.2142
gcuggucuaaguacggugguacuuacaacgaauugcucacaaccaguuacagauuucuuuguuccuucuccacucccacuguuucacuugacuaguauuuAUUAAAUUA	chr5:122846033-122846243(-)$1	210	13	122	224.5714
UUugguccaagugccgagguguuuacaacuaauugaucuuaaccauuuacagauuucuuuguuccuucuccacucccacuacuucacuugacuagccuuGAAAAAGAAA	chr7:37474680-37474917(+)$1	237	38	147	236.4999
gcugguccuagugcagugguguuuacaacuaauucaucacaaccaguuagagauuucuuucuuccuucuccacucccacugcuucacuugacuagccuuAAAAAAAAAA	chr17:48463442-48463658(-)$1	216	52	161	265.1428
gcuggucagaguguagugguguuuacaacuaauugaucacaaccaauuacagauuucuuuuuuccuucuccgcucccacugcuuuacuugacuagccuuuAAAAAAAga	chr6:29718112-29718348(+)$1	236	36	145	251.7857
gcugggccaagagcagugguguuuacaccuaauugauaacaacuaguuucagacuucuuuguuccuucuccacucccacugcuucacuugacuagccuuaaaaacaaaa	chr2:25231652-25231857(-)$1	205	43	152	244.8571
gcugguccgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuuUGCUGUGGU	chr7:148680782-148680988(+)$1	206	65	174	251.3571
gcugguccaagugcagugguguuuacaacuaauuuaucacaacagguuacagauugcuuucuuccuucuccacucaaacugcuucacuugacuagccuuAAAACAAACA	chr5:175983673-175983910(+)$1	237	32	141	241.2142
ucugguccaaaugcagugguauuuacaacuaauugaucacagccaguuacagauuucuuuguuccuucuccacuuccacugcuuuacuugacuagccuuaggaaaaaac	chr10:76311110-76311358(+)$1	248	40	149	244.4999
gcugauccgagugcagugguguuuacaacuacuugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuuaacuggccAAAAACGAAAAA	chr2:202673308-202673546(+)$1	238	96	205	248.7857
gcugguucaagugcagcgguguuuacaacucauugaucauaaccaguuacagauuucuuuguuccuucuccacucccgcugcuucacuugacuggccuAAAAAAAAAUU	chr12:93854404-93854636(-)$1	232	35	144	246.4285
gcugguccgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuucacuuugacugcuucacucggcuagccAGAAAAAAAAAA	chrX:117048198-117048420(-)$1	222	113	222	246.2857
gcugguccgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuuUGCUGUGGU	chr7:148680820-148681024(+)$1	204	27	136	251.3571
gcuggucugagggcagugguauuuacaauuaauugaucacaaccaguuacagauuucuuuguucuuucuccacucccgcugcuucacuugacuagccuAAAAGAAAAAG	chr12:63329446-63329682(+)$1	236	35	144	249.4285
gcugguccgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuuUGCUGUGGU	chr7:148680792-148680999(+)$1	207	55	164	251.3571
gcuggucugagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuaaccuuuGAAAAACAU	chr5:78465956-78466201(-)$1	245	44	153	266.0714
gcuggucaaagugcaacggucuuuacaacuaauugaucacaaccaguuacagauuuuuuuguuccuucuccacuccaacugcuucacuugacuagcAUAAGGAAAAAAA	chr7:99928299-99928504(-)$1	205	5	114	242.5714
gcugguaagauugcagugguauuuauaacucauuggucacaacuaguuacagauuucuuuguuccuucuccauucccacugcuucacuugacuagccAAAAAAAACCAA	chr3:101366225-101366460(+)$1	235	40	149	231.5714
gcugguccaagugcagugguguuuacaacuaauuguucacaaccaguuacauauuucuuuguuccuucuccacucccacugcuucacuugacuauccuaauaaaaaaau	chr19:6572871-6573108(-)$1	237	41	150	258.4285
gguaguccgagugcagugauauucacaacuaauugaucauaaccaguuacagauuccuuuguuccuucuccacucuuacugcuucacuugacuagccuuuuaaaaaaag	chrX:71504696-71504924(-)$1	228	29	138	235.1428
gcugguccaagugcagugguguuuacaacuaauuaaucacaaccauuuacagauguaguuguuccuucuccacucccacugcuucacuugacuagccuuucaaaacaaa	chr11:107955626-107955830(+)$1	204	14	123	249.8571
gcugguccgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuuUGCUGUGGU	chr7:148680815-148681020(+)$1	205	32	141	251.3571
gcagguccgagugcagugguguugauaacuaauucauuacaaucaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuggccuuuaaaaaaaua	chr12:31659136-31659384(-)$1	248	47	156	246.1428
Ucuggucugagugccgggguguuuacaacuaacugaucgcaaccauuuacagauuucuuuguuccuuuuccacucccacugcuucacuugacuagccuaaaaaaaaaaa	chr8:97321357-97321595(-)$1	238	46	155	246.9285
gcugguccgagugcaguggaguuuacaacuaauuaauuacaaccaguuacagauuuauuuguuccuucucuacucccacugcuucacuugacuagccaaaaauaaaaaa	chr14:50058874-50059097(-)$1	223	43	152	248.8571
gcugguccuagugcagugguguuuacaacuaauucaucacaaccaguuagagauuucuuucuuccuucuccacucccacugcuucacuugacuagccuuAAAAAAAAAA	chr17:48463465-48463706(-)$1	241	100	209	265.1428
gcuugucugaagucaguagugucuacaauuaauugaucacaaccaguuacagauuucuguguuccuucuccauucccacugcuucacuugacuagccuuAAAAAAAAAA	chr3:119929129-119929366(+)$1	237	38	147	241.4285
gcugguccaaguauauugguguuuacuauuaauugaucacagccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugauuagccuuAAAACAAAAU	chr17:44292335-44292548(-)$1	213	12	121	242.3571
gcuggucugagugcagugguguuuacaacucauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucauuugacuagucuuaaaaaaaaau	chr1:153758144-153758361(-)$1	217	65	174	265.8571
gcuggucugagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucauuguuccuuccccacuccuacugcuucacuugacuugccuuAAAAAAAAAU	chr6:106868526-106868733(+)$1	207	55	164	261.3571
UCAUGGCUAUAAAcagugguguuuacaaugaauugaucacaaccaguuacagauuucuuuguuccuucuccacuaccacugcuuuacuugacuagccuuAAAAAAAGAU	chr1:93492870-93493106(-)$1	236	39	148	222.6428
gcuggucugagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucauuguuccuuccccacuccuacugcuucacuugacuugccuuAAAAAAAAAU	chr6:106868492-106868699(+)$1	207	89	198	261.3571
gcugguccgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuuUGCUGUGGU	chr7:148680769-148680982(+)$1	213	78	187	251.3571
ggcugucugagugcagugguguuuacaacaaauugaucacaaccaguuacagguuucuuuguuccuucuccacucccacuguuucacuuggcuuaccuuaaaaaguaaa	chr5:149477888-149478100(+)$1	212	80	189	233.9999
gcugguuugagugcagugaugcuuacaacuaauugaucacauccaauuacagauuucuuugcucuuucuguacucccagugcuucacuugacuagccuuuaaagaaaaa	chrX:55609133-55609366(+)$1	233	33	142	230.4999
gcugaucugagugcaaugguguuuacaacugauugaucacaacaaguuacagaugucuuuguuccuucuccauucccacugcuucucuugacuagccuuAAAAAAAAUU	chr4:88665005-88665237(-)$1	232	33	142	245.5714
gcuggugcaaguacaaugguauuuacaacuuauugaucacaaacaguuacagauuccuuuguucuuucuccacccccacugcuucacuugacuagccuuuAAAAAAAUU	chr20:23438142-23438353(-)$1	211	32	141	235.0714
gcugaucugaaugcagugguguucacaacuaauugaucaaaacuaguuacacauuucuuuguuccuucuccacucccacugcuucacaaaacuagcauuaaauaaaaaa	chr6:121699844-121700079(-)$1	235	36	145	232.3571
gcugguccaagugcagugguguuuacagguaaccgaucacaaccaguuacagauuuuguuucuccuucuccacucccacugcuucacuugacuagucAAAAAAAAAAAA	chr4:154187963-154188198(-)$1	235	37	146	232.9999
gcuggucugagugcagugguguuuacaacuaauugaucacaaccaguuauagauguuuuuguuucaucuucacucccacuguuucacuugacuagccuuuAAAAAAAAA	chr6:31464366-31464583(-)$1	217	17	126	248.2142
gcuggucugagugcagugguguuuacaacuaauccaucacaaccaguuacagauuccuuuguucccucuccacucccacugcuucacuugacuagauuuuuaaaauacc	chr9:21160136-21160368(-)$1	232	34	143	240.0714
gcugguccgagugcagugguguuuguaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuAAGAAAAAGA	chr6:106902640-106902885(+)$1	245	63	172	265.5714
gcuggucugagugcauugguguuuacaacuaauugaucacaaccgguuacagauuucuuuguaccuucuccacucccacugcuucacugaccagccuuAAAAAAUAAAA	chr17:7440323-7440551(-)$1	228	39	148	228.5714
gcaggucccagugcagagguguuuacaacuaauuaaucacaaccaguuacagauugccuuguuucuucuccucucccacugcuucacuugacuagccuAAAAAAAAAAG	chr12:97373207-97373440(-)$1	233	34	143	242.1428
gcugguccaagugcagugguguuuacaacuaacugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucgcuugacuagccuuAAGAAAAAAA	chr17:46556419-46556655(+)$1	236	40	149	266.9285
gcuggucugagugcagugguguuuacaacuaauugaucacaagcaguuacaggucucuuuguuccuucuccacucccacugcuucacuugacuagccuaaaaaaaaaaa	chr14:21147525-21147766(+)$1	241	45	154	263.9285
gcuggucugagugcagucguguuuacaacuaauugaucacaaccaguuacagauugcuuuauucuuucuccacucacacugcuucacuugacuagcccuuAAAAAAAAG	chr6:109626655-109626899(+)$1	244	42	151	249.7142
ggcuggucugaggcagugauguuuacaacuaauugaucacaaccaguuacagauuccuuuguuccuucuccacucccacugcuucacuugacuagccuuuAAAAAAAAU	chr4:158689064-158689303(-)$1	239	38	147	233.5714
gcuggucugagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuuuuucauucccacugcuucacuucacuagccuAAAAAAUAAAA	chr10:10274538-10274771(+)$1	233	36	145	256.8571
gcugguccgaauacaguaguguuuacaacuaauugaucacaaccaguuacagauuucuuggucccuucuccacucccacugcuucacuugacuagccuuAAAAUAAUAA	chr11:64063467-64063684(+)$1	217	42	151	252.1428
gcuggucugagugcagugguguuuacaacucauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucauuugacuagucuuaaaaaaaaau	chr1:153758117-153758344(-)$1	227	48	157	265.8571
gcuggucugagugcagugguauuuacaacuaauugaucacaaucaguuauagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuuuaaaauauu	chr14:100049312-100049540(+)$1	228	42	151	255.7857
gcuggucugaguacagugguguuuacagcuaaaugaucacaaccacuuacauauuucuuuguuccuucuuuacucccacugcuucacuugacuagccuuAAAAAAGAAA	chr12:123252630-123252854(+)$1	224	16	125	247.2142
gccggcucgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagucuuuAAAAAAGAA	chr20:16651190-16651429(-)$1	239	43	152	259.7142
gcugguccaagugcagugguguuuacgacuaauuugucauaaccaguuauagauuucuuuguuccuuuuccacucccacugcuucacuugacuagccuuuGAAAAAUAA	chr17:43148769-43149016(+)$1	247	41	150	244.6428
gcuggucugagugcagugauguuuacaacuaauuggucacauucaguuacagauuuauuuguuccuucuccauucccacugcuucacuugacuagccuucaaaaaaauu	chr8:41660835-41661066(+)$1	231	32	141	247.2857
gcugguccgaaugcagugguauuuacaacuaauugaucacaaccgguuacagauuucuuuguuccuucuccacucccacugcuuaacuugaccagccuuAAAAAAAUAA	chr2:173422780-173423016(-)$1	236	37	146	256.2142
gcuggucaaagugcaacggucuuuacaacuaauugaucacaaccaguuacagauuuuuuuguuccuucuccacuccaacugcuucacuugacuagcAUAAGGAAAAAAA	chr7:99928304-99928540(-)$1	236	41	150	242.5714
gcuggucugagugcaguggugcuuacaacuaauuggucacaaccaauuacagauuuauuuguucauuuuccacuccuacugcuucaguugacuagccaaaaacaacaac	chr12:45274617-45274855(-)$1	238	104	213	229.2857
ggcuggucccauacagugguguuuacaacuaauugaucacaaccaguuacagacuucuuuguuucuucuccacucccacugcuucacuugacuagccCuaauaauaaua	chr4:41305170-41305389(-)$1	219	35	144	223.1428
gcuggucugagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuaaccuuuGAAAAACAU	chr5:78466001-78466238(-)$1	237	81	190	266.0714
gcugauccgagugcaaugguguuuacuacuaauugauuacaaccaguuacagauuucuuuguuucuucuccacucccacugcuucacuugacuagccuuAAAAAACAAA	chr15:52454894-52455136(+)$1	242	54	163	255.6428
gcugggccaagagcagugguguuuacaccuaauugauaacaacuaguuucagacuucuuuguuccuucuccacucccacugcuucacuugacuagccuuaaaaacaaaa	chr2:25231617-25231852(-)$1	235	38	147	244.8571
gcugcuucgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuCUUAAAAAUA	chr12:42848449-42848674(+)$1	225	73	182	260.1428

#otherMatches

#Struct PSSM
IIIIIIIDDDD{GGGGGGG{CCC:::eeeee[cccmmmmccc]eeeeeeeeeemmmmeeeee::::::::CCCYYGGGGGGGDDDDZZZIIIIIIIIIGGGGGGGJJJJ	chr14:31727715-31727948(-)$1	233	34	143	262.3571
iiiiiii[ddddggggggg[bb!!ggggggg++++++++++++ddddmmmmddddggggggg999999999bb22ggggggg333ddddiiiiiiiii55555ccc:::	chr11:107955587-107955826(+)$1	239	53	162	249.8571
BFFFFFFCCCKKGGGGGGG::::::::::ccc[bbmmmmbb]ccc:::eeeeemmmmeeeee:::::::::::::GGGGGGG}CCCZZZFFFFFF}BB:::::::::::	chrX:41175697-41175939(+)$1	242	44	153	251.9285
HHHHHHHHOOOOOOGGGGGGG::::::::ffffffqqqqqqqqffffff:ddddoooooodddd::::::::::::GGGGGGG______HHHHHHHH::::::::::::	chr4:41305155-41305370(-)$1	215	16	125	223.1428
FFFFF:::EEEEE{CCCddddmmmmddddffffffqqqqqqqqffffffddddmmmmdddd:::::::::::::::::::CCC}EEEEE::bb[gggggggxxxxxxxx	chr7:155978738-155978974(-)$1	236	58	167	264.2142
cnnnnnccc]eeeee]a22dddd]bb::bb!!eeeee!!a!!bb!!bb$$$$$ggggggg[==========[eeeee[bb[ccc!!ccc!!bb!!a^^^^^^^^^^^^^	chr22:42043996-42044216(-)$1	220	23	132	244.0714
iiiiiii[dddd!!ggggggg$$$$$bb[dddd[bb!!ddddyyyyyyyyyyyyyyyydddd4444bbddddbb22ggggggg22ddddiiiiiiiii:::::::::::	chr12:123252604-123252830(+)$1	226	42	151	247.2142
gggggg[gggggggmmmmggggggg>>>>>>>>>>>>>>>>gggggggeeeeemmmmeeeee:::::::::::eeeee[ffffff&&&&&&&ffffffssssssssssf	chr5:122846033-122846243(-)$1	210	13	122	224.5714
$$$cccooooooccciiiiiiiii:::::::EEEEEFFFFFFMMMMDDDD::::IIIIIIIII{EEEEE:::::::::ccc!!bbmmmmbb]ccc:cccmmmmccc:::	chr7:37474680-37474917(+)$1	237	38	147	236.4999
DD{CCCLLLDDDD::ffffffvvvvvvvvvvvvvffffff::::bb!!eeeeemmmmeeeee22bb::::DDDDZZZCCCDDDDJJJJJJJJJJJ}IIIIIIIIIZZZE	chr17:48463442-48463658(-)$1	216	52	161	265.1428
JJJJJJJJ{DDDD{GGGGGGG::::::::ffffffqqqqqqqqffffff:cccvvvvvvvvvvvvvccc:::::::GGGGGGG}DDDDJJJJJJJJJJ|||||||DDDD	chr6:29718112-29718348(+)$1	236	36	145	251.7857
EEA{DDDD::ffffff[bb[dddd####ccc[cccmmmmccc]ccc4444dddd]bb]ffffff::::eeeee[ccc[ffffffa[ccc!!bb"""cccssssssssss	chr2:25231652-25231857(-)$1	205	43	152	244.8571
HHHHHHH{EEEEE{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}EEEEEHHHHHHHHJJJJJJJJJJJJ	chr7:148680782-148680988(+)$1	206	65	174	251.3571
IIIIIII{EEEEE{FFFFFF:::::::::ffffffqqqqqqqqffffff:cccooooooccc:::::::::::::::FFFFFF}EEEEEIIIIIIIII:::::::::::	chr5:175983673-175983910(+)$1	237	32	141	241.2142
&eeeee&&&&&&&ddddcccpppppppccc]dddd666666eeeee7777777==========:CCC{GGGGGGGMMMMFFFFFFeeeee$$$$$ccc"""ffffffmm	chr10:76311110-76311358(+)$1	248	40	149	244.4999
cccooooooccc::ffffffpppppppffffffGGGGGGG::::bb!!eeeeemmmmeeeee22bb::CCCBBFFFFFF:cccssssssssssccc:::::::::::::	chr2:202673308-202673546(+)$1	238	96	205	248.7857
GGGGGG{FFFFFF{GGGGGGG::::::::::ddddqqqqqqqqdddd:eeeeemmmmeeeee::::::::::::::GGGGGGG}FFFFFFGGGGGGG@@@@@@@@@@@@	chr12:93854404-93854636(-)$1	232	35	144	246.4285
HHHHH{GGGGGGG{FFFFFF::::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee:::::::::::::::FFFFFF}GGGGGGGHHHHHHHH::::::::::	chrX:117048198-117048420(-)$1	222	113	222	246.2857
HHHHHHH{EEEEE{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}EEEEEHHHHHHHHeeeeedddd[bb	chr7:148680820-148681024(+)$1	204	27	136	251.3571
IIIIIIIEEEEE{FFFFFF::::::::::ffffffqqqqqqqqffffffddddmmmmdddd::::::::::::::FFFFFFEEEEEZZZIIIIIIIII:::::::::::	chr12:63329446-63329682(+)$1	236	35	144	249.4285
HHHHHHH{EEEEE{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}EEEEEHHHHHHHH::::eeeee[bb	chr7:148680792-148680999(+)$1	207	55	164	251.3571
gggggg[bb[a!!ddddcccpppppppccc]dddd22a]bbggggggg]dddd]bb22eeeeeffffff!!bb[dddd!!ccc[ffffff!!dddd+++++++++++++	chr5:78465956-78466201(-)$1	245	44	153	266.0714
hhhhuuuuuuuuuuuuhhhhhhhh:::::ffffffqqqqqqqqffffffbb!!ggggggg[ffffff%%%%%%ccc"""ddddbbmmmmbb22dddd333ccc>>>>>>	chr7:99928299-99928504(-)$1	205	5	114	242.5714
HHHHHHCCCLLLGGGGGGG:::::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee:::::::::::::GGGGGGG~~~~CCC}HHHHHHHH:::::::::::	chr3:101366225-101366460(+)$1	235	40	149	231.5714
E{EEEEE{DDDDGGGGGGGccc!!ddddmmmmdddd22ccc:::bb!!cccqqqqqqqqccc22bb:::::::::GGGGGGGZZZDDDDEEEEE}EEEEE:::::::::	chr19:6572871-6573108(-)$1	237	41	150	258.4285
ccceeeee22cccbbeeeee:::::::::ffffffqqqqqqqqffffff::::::::::DDDD{EEEEEMMMMEEEEE{CCCNNNNNDDDD::::fffffflllfffff	chrX:71504696-71504924(-)$1	228	29	138	235.1428
iiiiiii[ddddggggggg[bb!!ggggggg++++++++++++ddddmmmmddddggggggg999999999bb22ggggggg333ddddiiiiiiiii55555ccc:::	chr11:107955626-107955830(+)$1	204	14	123	249.8571
HHHHHHH{EEEEE{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}EEEEEHHHHHHHHeeeeedddd[bb	chr7:148680815-148681020(+)$1	205	32	141	251.3571
DD{DDDD{DDDDGGGGGGGccccccqqqqqqqqccc22ccc:::bb!!eeeeemmmmeeeee22bb:::::::::GGGGGGGZZZDDDDDDDD}DDDD@@@@@@@@@@E	chr12:31659136-31659384(-)$1	248	47	156	246.1428
fffffccceeeee::bb[ccc[cccqqqqqqqqccc]ccc22bb::::eeeeemmmmeeeee::::::::::EEEEE}GGGGGGG|||||||HHHHHHHH:::::::::	chr8:97321357-97321595(-)$1	238	46	155	246.9285
ggggggg[ddddgggggggccc++++++++++++++++++++++bb!!eeeeemmmmeeeee22bb55555ccc]ggggggg333ddddgggggggffffff^^^^^^^	chr14:50058874-50059097(-)$1	223	43	152	248.8571
hhhhhhh]ccc]cccffffffvvvvvvvvvvvvvffffffDDDD:::::ddddooooooddddffffff''''''''ffffff[dddd[eeeeezzzzzzzzzzzzzzz	chr17:48463465-48463706(-)$1	241	100	209	265.1428
bb333dddd333eeeeeGGGGGGG::::::eeeeeqqqqqqqqeeeeeddddmmmmdddd::::::::::::::::::GGGGGGGKKCCC{EEEEE:::::::::::::	chr3:119929129-119929366(+)$1	237	38	147	241.4285
{DDDDDDDDEEEEE{HHHHHHHHKKEEEEEeeeeeqqqqqqqqeeeeeeeeeemmmmeeeee::::::::::::::ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:44292335-44292548(-)$1	213	12	121	242.3571
gggggg[bb[a!!eeeeebbpppppppbb]eeeee22a]bbggggggg22eeeee]dddd]a333ddddccc22bb55555dddd:::::ffffff''''''''fffff	chr1:153758144-153758361(-)$1	217	65	174	265.8571
ffffff[bb[a!!ddddcccpppppppccc]dddd22a]bbffffff22dddd::::::::::::::::::::::::::FFFFFF:::ffffffccc"""ffffff[ff	chr6:106868526-106868733(+)$1	207	55	164	261.3571
ffffdddd:ffffffmmmmffffff:::::eeeeeqqqqqqqqeeeee:DDDDggggggg[ccc!!ffffffbb%%%%%%cccssssssssssccc999999999bb]f	chr1:93492870-93493106(-)$1	236	39	148	222.6428
ffffff[bb[a!!ddddcccpppppppccc]dddd22a]bbffffff22cccHHHHHHHH}DDDD::::::::::::::::::::::::::::::::::::::::::::	chr6:106868492-106868699(+)$1	207	89	198	261.3571
HHHHHHH{EEEEE{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}EEEEEHHHHHHHHJJJJJJJJJJJJ	chr7:148680769-148680982(+)$1	213	78	187	251.3571
ggggg!!dddd[ggggggg[bb####ffffff!!bb####ddddpppppppddddbbffffff88888888bb22gggggggdddd22ggggggg::::::::::::::	chr5:149477888-149478100(+)$1	212	80	189	233.9999
CCCKKGGGGGGGLLLFFFFFF::::::::ffffffqqqqqqqqffffff::::==============$$$$$bb"""bb[cccbbmmmmbb22cccbb4444bb66666	chrX:55609133-55609366(+)$1	233	33	142	230.4999
dnnnnnddddccc]iiiiiiiii0000000000ccc::::::DDDDNNNNNEEEEE::::::::::::::::::::::::cccbbmmmmbb22ccc:ffffffmmmmff	chr4:88665005-88665237(-)$1	232	33	142	245.5714
b[ccc[a[ccc[dddd[bb[dddd!!dddd!!cccmmmmccc22dddd22dddd]bb]dddd]ccc]a]ccc]bb4444dddd4444dddd22a]eeeee:::::::::	chr20:23438142-23438353(-)$1	211	32	141	235.0714
CCC:::::HHHHHHHH{Adddd####eeeee[bboooooobb]eeeeeddddiiiiiiiii####dddd))))))))))ddddssssssssssdddd>>>>>>>>>>>d	chr6:121699844-121700079(-)$1	235	36	145	232.3571
iiiiiii[ddddggggggg[bb####ccc[ccc[ddddvvvvvvvvvvvvvdddd22ccc333ccc55555bb22ggggggg333ddddiiiiiiiii:::::::::::	chr4:154187963-154188198(-)$1	235	37	146	232.9999
IIIIIII{EEEEEFFFFFF::::::::::ffffffqqqqqqqqffffff:eeeeerrrrrrrrreeeee::::::FFFFFFZZZEEEEEIIIIIIIII@@@@@@@@@@@	chr6:31464366-31464583(-)$1	217	17	126	248.2142
:ffffffdddd[ggggggg[bb!!dddd!!dddd####bbnnnnnbb4444dddd333dddd999999999bb22gggggggdddd333ffffff:::::::::::eee	chr9:21160136-21160368(-)$1	232	34	143	240.0714
ggggggg[ddddggggggg[==========!!cccmmmmccc22==========>>>>>>>>>>>>>>>>>>>>>ggggggg333ddddgggggggcccooooooccc:	chr6:106902640-106902885(+)$1	245	63	172	265.5714
ddssssssssssddddhhhhhhhh::::::::::::::::::::ccc[eeeeemmmmeeeeeccc:::::::::::ffffff####ccc####ddddxxxxxxxxxxxx	chr17:7440323-7440551(-)$1	228	39	148	228.5714
dd[dddd[eeeee[eeeee[a$$$$$ccc####eeeeevvvvvvvvvvvvveeeee4444ccc4444a]eeeee22eeeee88888888dddd]dddd:::::::::::	chr12:97373207-97373440(-)$1	233	34	143	242.1428
IIIIIII{DDDDGGGGGGG::::::::::ffffffqqqqqqqqffffffddddmmmmdddd::::::::::::::GGGGGGGZZZDDDDIIIIIIIII:::::::::::	chr17:46556419-46556655(+)$1	236	40	149	266.9285
HHHHHHHDDDD{GGGGGGG:::::::dddd!!cccmmmmccc22dddd::cccssssssssssccc:::::::::GGGGGGGDDDDZZZHHHHHHHH::::::::::::	chr14:21147525-21147766(+)$1	241	45	154	263.9285
GGGGGGG{EEEEE{CCC{DDDD:::::::ffffffqqqqqqqqffffff:cccrrrrrrrrrccc::::::::::DDDD}CCC}EEEEEGGGGGGG:cccooooooccc	chr6:109626655-109626899(+)$1	244	42	151	249.7142
IIIIIIIIJJJJJJJJJJ::::::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::JJJJJJJJJJZZZIIIIIIIII:::::::::::	chr4:158689064-158689303(-)$1	239	38	147	233.5714
eeee22ffffffGGGGGGG:::::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee:::::::::::::GGGGGGGdddd[ccc[cccyyyyyyyyyyyyyyy	chr10:10274538-10274771(+)$1	233	36	145	256.8571
hhhhhh!!bb"""ddddcccpppppppccc]dddd]bb333hhhhhhhh:::::::::::FFFFFF:::CCCKKCCCKKDDDD{BB::ccc"""eeeee!!eeeeerrr	chr11:64063467-64063684(+)$1	217	42	151	252.1428
gggggg[bb[a!!eeeeebbpppppppbb]eeeee22a]bbggggggg22eeeee]dddd]bbffffffeeeeeccc[bb))))))))))ffffff''''''''fffff	chr1:153758117-153758344(-)$1	227	48	157	265.8571
iiiiiiidddd[ggggggg[eeeee[dddd[ddddmmmmdddd]dddd]eeeee>>>>>>>>>>>>>>>>>>>>>gggggggdddd333iiiiiiiiigggggggoooo	chr14:100049312-100049540(+)$1	228	42	151	255.7857
JJJJJJJJ{Accc[ffffffbb"""bboooooobb333bb]ffffffccc:::::::::::::::::::::EEEEELLLGGGGGGGKKCCCBB:eeeeevvvvvvvvvv	chr12:123252630-123252854(+)$1	224	16	125	247.2142
DCCC{AGGGGGGG{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}GGGGGGG::::eeeeellleeeee:	chr20:16651190-16651429(-)$1	239	43	152	259.7142
i[ccc"""ccc[dddd[bb[eeeee[dddd!!bboooooobb22dddd]eeeee]bb]dddd22ccc22ccc333iiiiiiiii333bb22bb]===============	chr17:43148769-43149016(+)$1	247	41	150	244.6428
HHHHHHHDDDD{FFFFFFdddd"""cccmmmmccc333dddd::bb!!eeeeemmmmeeeee22bb::::::::::FFFFFFDDDDZZZHHHHHHHHYYDDDD______	chr8:41660835-41661066(+)$1	231	32	141	247.2857
FFFFFFFNNNNNGGGGGGG:::::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee:::::::::::::GGGGGGG|||||||FFFFFF}FFFFFF@@@@@@@	chr2:173422780-173423016(-)$1	236	37	146	256.2142
hhhhuuuuuuuuuuuuhhhhhhhh:::::ffffffqqqqqqqqffffffeeeeeffffff[ffffff%%%%%%ccc"""ddddbbmmmmbb22dddd333ccc>>>>>>	chr7:99928304-99928540(-)$1	236	41	150	242.5714
IIIIIIIDDDD{GGGGGGG::::::::::hhhhhhhhmmmmhhhhhhhhddddmmmmdddd::::::::::::::GGGGGGGDDDDZZZIIIIIIIIIEEEEE::::::	chr12:45274617-45274855(-)$1	238	104	213	229.2857
HHHHHHHHOOOOOOGGGGGGG::::::::ffffffqqqqqqqqffffff:ddddoooooodddd::::::::::::GGGGGGG______HHHHHHHH@@@@@@@@@@@@	chr4:41305170-41305389(-)$1	219	35	144	223.1428
cccccc22==============:::::::ffffffqqqqqqqqffffff::::::::::::::ffffff!!bb[dddd!!ccc[ffffff!!dddd+++++++++++++	chr5:78466001-78466238(-)$1	237	81	190	266.0714
b]bbddddEEEEEddddddddnnnnndddd]dddd:::::::::bb!!eeeeemmmmeeeee22bb::::EEEEEDDDDFFFFFFLLLIIIIIIIIIbbqqqqqqqqbb	chr15:52454894-52455136(+)$1	242	54	163	255.6428
EEA{DDDD::ffffff[bb[dddd####ccc[cccmmmmccc]ccc4444dddd]bb]ffffff::::eeeee[ccc[ffffffa[ccc!!bb"""cccssssssssss	chr2:25231617-25231852(-)$1	235	38	147	244.8571
eeee4444==============:::::::ffffffqqqqqqqqffffff::ffffff++++++++++++++++++eeeeecccbbmmmmbb22ccc>>>>>>>>>>>>>	chr12:42848449-42848674(+)$1	225	73	182	260.1428

#DB
(((((((((((.(((((((.(((...(((((.(((....))).)))))(((((....)))))........)))..)))))))))))...))))))))))))))))))))	chr14:31727715-31727948(-)$1	1	34	143	262.3571
(((((((.(((((((((((.((..(((((((............((((....))))))))))).........))..)))))))...))))))))))))).....)))...	chr11:107955587-107955826(+)$1	1	53	162	249.8571
((((((((((..(((((((..........(((.((....)).)))...(((((....))))).............))))))).)))...)))))).))...........	chrX:41175697-41175939(+)$1	1	44	153	251.9285
((((((((......(((((((........((((((........)))))).((((......))))............)))))))......))))))))............	chr4:41305155-41305370(-)$1	1	16	125	223.1428
(((((...(((((.(((((((....))))((((((........))))))((((....))))...................))).)))))..((.(((((((........	chr7:155978738-155978974(-)$1	1	58	167	264.2142
(.....))).))))).)..)))).))..((..(((((..(..((..((.....(((((((.((((((((((.(((((.((.(((..(((..((..(.............	chr22:42043996-42044216(-)$1	1	23	132	244.0714
(((((((.((((..(((((((.....((.((((.((..((((................))))....))))))))..)))))))..)))))))))))))...........	chr12:123252604-123252830(+)$1	1	42	151	247.2142
((((((.(((((((....)))))))................)))))))(((((....)))))...........(((((.((((((.......((((((..........)	chr5:122846033-122846243(-)$1	1	13	122	224.5714
...(((......)))))))))))).......)))))((((((....((((....(((((((((.(((((.........(((..((....)).))).(((....)))...	chr7:37474680-37474917(+)$1	1	38	147	236.4999
((.(((...((((..((((((.............))))))....((..(((((....)))))..))....))))...)))))))))))))))))).)))))))))...)	chr17:48463442-48463658(-)$1	1	52	161	265.1428
((((((((.((((.(((((((........((((((........)))))).(((.............))).......))))))).)))))))))))))).......))))	chr6:29718112-29718348(+)$1	1	36	145	251.7857
(((.((((..((((((.((.((((....(((.(((....))).)))....)))).)).))))))....(((((.(((.(((((((.(((..((...(((..........	chr2:25231652-25231857(-)$1	1	43	152	244.8571
(((((((.(((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).)))))))))))))))))))))))))	chr7:148680782-148680988(+)$1	1	65	174	251.3571
(((((((.(((((.((((((.........((((((........)))))).(((......)))...............)))))).))))))))))))))...........	chr5:175983673-175983910(+)$1	1	32	141	241.2142
.(((((.......(((((((.......))).))))......))))).......)))))))))).(((.(((((((....(((((((((((.....(((...((((((..	chr10:76311110-76311358(+)$1	1	40	149	244.4999
(((......)))..((((((.......)))))))))))))....((..(((((....)))))..))..))))))))))).(((..........))).............	chr2:202673308-202673546(+)$1	1	96	205	248.7857
((((((.((((((.(((((((..........((((........)))).(((((....)))))..............))))))).)))))))))))))............	chr12:93854404-93854636(-)$1	1	35	144	246.4285
(((((.(((((((.((((((......((((..(((....)))..))))(((((....)))))...............)))))).)))))))))))))))..........	chrX:117048198-117048420(-)$1	1	113	222	246.2857
(((((((.(((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).)))))))))))))(((((((((.((	chr7:148680820-148681024(+)$1	1	27	136	251.3571
((((((((((((.((((((..........((((((........))))))((((....))))..............)))))))))))...)))))))))...........	chr12:63329446-63329682(+)$1	1	35	144	249.4285
(((((((.(((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).)))))))))))))....(((((.((	chr7:148680792-148680999(+)$1	1	55	164	251.3571
((((((.((.(..(((((((.......))).))))..).))))))))).)))).))..)))))((((((..((.((((..(((.((((((..((((.............	chr5:78465956-78466201(-)$1	1	44	153	266.0714
((((............)))))))).....((((((........))))))((..(((((((.((((((......(((...((((((....))..))))...)))......	chr7:99928299-99928504(-)$1	1	5	114	242.5714
(((((((((...(((((((.......((((..(((....)))..))))(((((....))))).............)))))))....))).))))))))...........	chr3:101366225-101366460(+)$1	1	40	149	231.5714
(.(((((.((((((((((((((..((((....))))..)))...((..(((........)))..)).........)))))))...))))))))).))))).........	chr19:6572871-6573108(-)$1	1	41	150	258.4285
))))))))..)))))))))).........((((((........))))))..........((((.(((((....(((((.(((.....((((....((((((...)))))	chrX:71504696-71504924(-)$1	1	29	138	235.1428
(((((((.(((((((((((.((..(((((((............((((....))))))))))).........))..)))))))...))))))))))))).....)))...	chr11:107955626-107955830(+)$1	1	14	123	249.8571
(((((((.(((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).)))))))))))))(((((((((.((	chr7:148680815-148681020(+)$1	1	32	141	251.3571
((.((((.(((((((((((((((((........)))..)))...((..(((((....)))))..)).........)))))))...)))))))).))))..........)	chr12:31659136-31659384(-)$1	1	47	156	246.1428
)))))))))))))..((.(((.(((........))).)))..))....(((((....)))))..........))))).))))))).......)))))))).........	chr8:97321357-97321595(-)$1	1	46	155	246.9285
(((((((.((((((((((((((......................((..(((((....)))))..)).....))).)))))))...)))))))))))((((((.......	chr14:50058874-50059097(-)$1	1	43	152	248.8571
))))))).))).)))((((((.............))))))((((.....((((......))))((((((........((((((.((((.(((((...............	chr17:48463465-48463706(-)$1	1	100	209	265.1428
))...))))...)))))(((((((......(((((........)))))((((....))))..................(((((((..(((.(((((.............	chr3:119929129-119929366(+)$1	1	38	147	241.4285
.(((((((((((((.((((((((..((((((((((........)))))(((((....)))))..............(((((((..........................	chr17:44292335-44292548(-)$1	1	12	121	242.3571
((((((.((.(..(((((((.......)).)))))..).)))))))))..))))).)))).)...)))))))..)).....)))).....((((((........(((((	chr1:153758144-153758361(-)$1	1	65	174	265.8571
((((((.((.(..(((((((.......))).))))..).))))))))..))))..........................))))))...(((((((((...((((((.((	chr6:106868526-106868733(+)$1	1	55	164	261.3571
)))))))).((((((....)))))).....(((((........))))).))))(((((((.(((..((((((((......(((..........))).........)).)	chr1:93492870-93493106(-)$1	1	39	148	222.6428
((((((.((.(..(((((((.......))).))))..).))))))))..))))))))))).))))............................................	chr6:106868492-106868699(+)$1	1	89	198	261.3571
(((((((.(((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).)))))))))))))))))))))))))	chr7:148680769-148680982(+)$1	1	78	187	251.3571
(((((..((((.(((((((.((....((((((..((....((((.......))))))))))))........))..)))))))))))..)))))))..............	chr5:149477888-149478100(+)$1	1	80	189	233.9999
(((..(((((((...((((((........((((((........))))))....((((((((((((((.....((...((.(((((....))..)))))....)).....	chrX:55609133-55609366(+)$1	1	33	142	230.4999
(.....))))))).)))))))))..........)))......((((.....(((((........................(((((....))..))).((((((....))	chr4:88665005-88665237(-)$1	1	33	142	245.5714
(.(((.(.(((.((((.((.((((..((((..(((....)))..))))..)))).)).)))).))).).))).))....))))....))))..).))))).........	chr20:23438142-23438353(-)$1	1	32	141	235.0714
(((.....((((((((.(((((....(((((.((......)).)))))))))(((((((((....((((..........((((..........))))...........)	chr6:121699844-121700079(-)$1	1	36	145	232.3571
(((((((.(((((((((((.((....(((.(((.((((.............))))..)))...))).....))..)))))))...)))))))))))))...........	chr4:154187963-154188198(-)$1	1	37	146	232.9999
(((((((.(((((((((((..........((((((........)))))).(((((.........)))))......))))))...))))))))))))))...........	chr6:31464366-31464583(-)$1	1	17	126	248.2142
.((((((((((.(((((((.((..((((..((((....((.....))....))))...)))).........))..)))))))))))...))))))...........(((	chr9:21160136-21160368(-)$1	1	34	143	240.0714
(((((((.(((((((((((.((((((((((..(((....)))..)))))))))).....................)))))))...)))))))))))(((......))).	chr6:106902640-106902885(+)$1	1	63	172	265.5714
((..........))))))))))))....................(((.(((((....))))))))...........((((((....(((....((((............	chr17:7440323-7440551(-)$1	1	39	148	228.5714
((.((((.(((((.(((((.(.....(((....(((((.............)))))....)))....).)))))..)))))........)))).))))...........	chr12:97373207-97373440(-)$1	1	34	143	242.1428
(((((((.(((((((((((..........((((((........))))))((((....))))..............)))))))...)))))))))))))...........	chr17:46556419-46556655(+)$1	1	40	149	266.9285
(((((((((((.(((((((.......((((..(((....)))..))))..(((..........))).........)))))))))))...))))))))............	chr14:21147525-21147766(+)$1	1	45	154	263.9285
(((((((.(((((.(((.((((.......((((((........)))))).(((.........)))..........)))).))).)))))))))))).(((......)))	chr6:109626655-109626899(+)$1	1	42	151	249.7142
((((((((((((((((((........((((..(((....)))..))))(((((....)))))..............))))))))))...)))))))))...........	chr4:158689064-158689303(-)$1	1	38	147	233.5714
))))..))))))(((((((.......((((..(((....)))..))))(((((....))))).............)))))))((((.(((.(((...............	chr10:10274538-10274771(+)$1	1	36	145	256.8571
((((((..((...(((((((.......))).)))).))...))))))))...........))))))...(((..(((..((((.((..(((...(((((..(((((...	chr11:64063467-64063684(+)$1	1	42	151	252.1428
((((((.((.(..(((((((.......)).)))))..).)))))))))..))))).)))).))))))))((((((((.((..........((((((........(((((	chr1:153758117-153758344(-)$1	1	48	157	265.8571
(((((((((((.(((((((.(((((.((((.((((....)))).)))).))))).....................)))))))))))...)))))))))(((((((....	chr14:100049312-100049540(+)$1	1	42	151	255.7857
((((((((.((((.((((((((...((......))...)).))))))))).....................(((((...(((((((..(((((.(((((..........	chr12:123252630-123252854(+)$1	1	16	125	247.2142
((((.((((((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).)))))))....(((((...))))).	chr20:16651190-16651429(-)$1	1	43	152	259.7142
(.(((...(((.((((.((.(((((.((((..((......))..)))).))))).)).))))..)))..)))...)))))))))...))..)).)))))))))))))))	chr17:43148769-43149016(+)$1	1	41	150	244.6428
(((((((((((.((((((((((...(((....)))...))))..((..(((((....)))))..))..........))))))))))...))))))))..))))......	chr8:41660835-41661066(+)$1	1	32	141	247.2857
(((((((.....(((((((.......((((..(((....)))..))))(((((....))))).............))))))).......)))))).)))))).......	chr2:173422780-173423016(-)$1	1	37	146	256.2142
((((............)))))))).....((((((........))))))(((((((((((.((((((......(((...((((((....))..))))...)))......	chr7:99928304-99928540(-)$1	1	41	150	242.5714
(((((((((((.(((((((..........((((((((....))))))))((((....))))..............)))))))))))...))))))))))))))......	chr12:45274617-45274855(-)$1	1	104	213	229.2857
((((((((......(((((((........((((((........)))))).((((......))))............)))))))......))))))))............	chr4:41305170-41305389(-)$1	1	35	144	223.1428
))))))..)))))))))))))).......((((((........))))))..............((((((..((.((((..(((.((((((..((((.............	chr5:78466001-78466238(-)$1	1	81	190	266.0714
).))))))(((((((((((((.....)))).)))).........((..(((((....)))))..))....)))))((((((((((...(((((((((((........))	chr15:52454894-52455136(+)$1	1	54	163	255.6428
(((.((((..((((((.((.((((....(((.(((....))).)))....)))).)).))))))....(((((.(((.(((((((.(((..((...(((..........	chr2:25231617-25231852(-)$1	1	38	147	244.8571
))))....)))))))))))))).......((((((........))))))..((((((..................((((((((((....))..))).............	chr12:42848449-42848674(+)$1	1	73	182	260.1428

#PSSM
g : 0.94	U : 0.04	u : 0.01	
c : 0.89	g : 0.07	U : 0.01	C : 0.01	
u : 0.88	c : 0.07	a : 0.02	A : 0.01	
g : 0.88	u : 0.07	c : 0.01	a : 0.01	U : 0.01	
g : 0.91	a : 0.05	G : 0.01	c : 0.01	
u : 0.89	g : 0.07	G : 0.01	c : 0.01	
c : 0.85	u : 0.10	a : 0.01	C : 0.01	g : 0.01	
c : 0.52	u : 0.40	a : 0.05	U : 0.01	
g : 0.64	a : 0.25	c : 0.04	u : 0.04	A : 0.01	
a : 0.94	c : 0.02	U : 0.01	g : 0.01	
g : 0.84	a : 0.11	c : 0.01	u : 0.01	A : 0.01	
u : 0.91	g : 0.04	a : 0.02	A : 0.01	
g : 0.85	a : 0.11	u : 0.01	A : 0.01	
c : 0.97	u : 0.02	
a : 0.94	g : 0.02	c : 0.02	
g : 0.89	a : 0.07	u : 0.02	
u : 0.91	c : 0.04	a : 0.02	g : 0.01	
g : 0.95	a : 0.02	c : 0.01	
g : 0.94	a : 0.05	
u : 0.98	a : 0.01	
g : 0.85	a : 0.11	c : 0.02	
u : 0.95	c : 0.04	
u : 0.98	c : 0.01	
u : 0.95	c : 0.02	g : 0.01	
a : 0.98	g : 0.01	
c : 0.95	u : 0.04	
a : 0.95	u : 0.02	g : 0.01	
a : 0.91	c : 0.04	g : 0.04	
c : 0.92	u : 0.05	g : 0.01	
u : 0.95	g : 0.02	a : 0.01	
a : 0.91	c : 0.05	g : 0.01	u : 0.01	
a : 0.97	g : 0.01	c : 0.01	
u : 0.91	c : 0.05	a : 0.02	
u : 0.97	c : 0.02	
g : 0.85	a : 0.05	c : 0.05	u : 0.02	
a : 0.91	g : 0.05	c : 0.01	u : 0.01	
u : 0.99	
c : 0.92	u : 0.04	a : 0.02	
a : 0.97	u : 0.01	g : 0.01	
c : 0.92	u : 0.05	a : 0.01	
a : 0.99	
a : 0.94	g : 0.02	u : 0.02	
c : 0.92	u : 0.04	a : 0.01	g : 0.01	
c : 0.88	u : 0.08	a : 0.02	
a : 0.95	g : 0.04	
g : 0.85	u : 0.05	c : 0.04	a : 0.04	
u : 0.99	
u : 0.99	
a : 0.97	u : 0.02	
c : 0.92	u : 0.04	g : 0.02	
a : 0.99	
g : 0.94	u : 0.04	c : 0.01	
a : 0.97	g : 0.02	
u : 0.94	c : 0.05	
u : 0.92	g : 0.05	c : 0.01	
u : 0.89	c : 0.05	g : 0.04	
c : 0.87	a : 0.07	u : 0.05	
u : 0.91	g : 0.04	a : 0.02	c : 0.01	
u : 0.98	g : 0.01	
u : 0.98	g : 0.01	
g : 0.91	c : 0.04	u : 0.02	a : 0.01	
u : 0.97	c : 0.02	
u : 0.97	a : 0.01	c : 0.01	
c : 0.92	u : 0.07	
c : 0.92	u : 0.05	a : 0.01	
u : 0.97	a : 0.01	c : 0.01	
u : 0.99	
c : 0.92	u : 0.07	
u : 0.97	c : 0.02	
c : 0.91	u : 0.07	g : 0.01	
c : 0.92	u : 0.05	a : 0.01	
a : 0.97	g : 0.01	u : 0.01	
c : 0.91	u : 0.08	
u : 0.98	c : 0.01	
c : 0.95	u : 0.02	a : 0.01	
c : 0.94	a : 0.02	u : 0.02	
c : 0.88	u : 0.05	a : 0.04	g : 0.01	
a : 0.97	g : 0.02	
c : 0.98	g : 0.01	
u : 0.98	a : 0.01	
g : 0.98	a : 0.01	
c : 0.95	u : 0.04	
u : 0.99	
u : 0.99	
c : 0.94	u : 0.04	a : 0.01	
a : 0.97	u : 0.01	g : 0.01	
c : 0.95	u : 0.02	g : 0.01	
u : 0.98	a : 0.01	
u : 0.95	c : 0.01	a : 0.01	g : 0.01	
g : 0.94	a : 0.04	c : 0.01	
a : 0.95	g : 0.02	c : 0.01	
c : 0.98	u : 0.01	
u : 0.97	a : 0.01	c : 0.01	
a : 0.89	g : 0.05	u : 0.04	
g : 0.92	a : 0.04	u : 0.01	c : 0.01	
c : 0.89	u : 0.07	a : 0.02	
c : 0.89	a : 0.02	A : 0.02	u : 0.02	G : 0.01	
u : 0.82	A : 0.05	C : 0.02	U : 0.02	a : 0.02	G : 0.01	c : 0.01	
u : 0.75	A : 0.15	a : 0.07	G : 0.01	
A : 0.41	u : 0.32	a : 0.21	G : 0.01	c : 0.01	C : 0.01	
A : 0.51	a : 0.22	U : 0.08	G : 0.07	u : 0.05	c : 0.02	g : 0.01	
A : 0.50	a : 0.28	G : 0.14	u : 0.02	U : 0.02	g : 0.01	
A : 0.55	a : 0.28	C : 0.08	u : 0.02	U : 0.01	G : 0.01	c : 0.01	
A : 0.54	a : 0.31	U : 0.08	C : 0.02	G : 0.01	g : 0.01	
A : 0.54	a : 0.25	G : 0.08	U : 0.04	u : 0.02	c : 0.02	g : 0.01	
A : 0.52	a : 0.24	U : 0.07	c : 0.04	G : 0.04	u : 0.04	C : 0.02	
A : 0.44	a : 0.32	G : 0.11	U : 0.07	C : 0.04	
A : 0.47	a : 0.22	G : 0.10	u : 0.07	U : 0.07	g : 0.02	C : 0.01	c : 0.01	
A : 0.38	U : 0.22	a : 0.21	u : 0.07	c : 0.04	G : 0.04	g : 0.01	

#score	17341.428571428507
#seq	70
#width	109
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_CDS_m2_run1.nuc.txt

#NT
AGCCCAGCGCCGCGAGCCGCUCCCCGGCGGGCUGGCUCCUGGCCCCGGAAGCGCGAGCGUUCACUUAGCGGCGAGUGGCUCCGUCUCCGCGGACAGAgcgcgcgcccccuggcccggcccgcgaggggcucccggcgcggUCCCCGAGCAUUUCCCGCCGGGUGGAGCGGGCCGAGCCCGGCAGGAUGACCAGCCCCGCGGCCGCUCAAAGCCGGGAGAUCGACUGUUUGAGCCCGGAAGCGCAGAAGCUGGUAAGAGGAAAGCGCUUCCGAAACUUUCUUUCGUGACUGCGGCGGGGUUUCAGGGGCUUCCAGCUCGUUCCGAGGUCAAUGGCAGGCGCAGGUG	chr2:238600799-238601265(+)$1	466	114	459	495.0000

#otherMatches

#Struct PSSM
####dddd!!ggggggg"""bb[a"""ccc[ccc[bb!!bb!!eeeee[dddd"""ffffffbb!!iiiiiiiii!!cccnnnnnccc]iiiiiiiii333bb]ffffff22dddd22eeeeebb22bb]ccc]ccc22a]bbgggggggdddd22iiiiiiiii:::::HHHHHHHH{BBccc[eeeeeggggggg[dddd&&&&&&&eeeee[ffffffpppppppffffffeeeeeddddggggggg4444eeeee]cccccc[affffff[eeeeeeeeee[arrrrrrrrra]eeeee]eeeee]ffffff]a]ccc::::BB}HHHHHHHHddddllld	chr10:6130899-6131256(+)$1	357	9	354	495.0000
fffff$$$$$dddd[dddd####dddd[ddddbbdddd[bb[bb[dddd[ccc[dddd"""eeeeeooooooeeeeeddddccc]dddd]bb]bbdddd]bb]dddd]dddd22dddd]dddd22ffffff22iiiiiiiiidddd[bbpppppppbbddddJJJJJJJJJJ{FFFFFFbbbblllbb]bbHHHHHHHH{BB:ggggggg!!cccqqqqqqqqcccggggggg:iiiiiiiii$$$$$bboooooobb4444iiiiiiiii::::::bboooooobb::BB}HHHHHHHH~~~~FFFFFFZZZJJJJJJJJJJYYA}BBYYCCC}IIIIIIIIIC	chr2:238600799-238601265(+)$1	466	114	459	495.0000

#DB
....((((..(((((((...((.(...(((.(((.((..((..(((((.((((...((((((((..(((((((((..(((.....))).)))))))))...)).))))))..))))..)))))))..)).))).)))..).)))))))))))))..))))))))).....((((((((.(((((.((((((((((((.((((.......(((((.((((((.......))))))))))))))))))))))....))))).)))(((.(((((((.((((((((((.(.........).))))).))))).)))))).).)))....)).))))))))((((...)	chr10:6130899-6131256(+)$1	1	9	354	495.0000
(((((.....((((.((((....((((.((((((((((.((.((.((((.(((.((((...(((((......)))))))))))).)))).)).)))))).)).)))).))))..)))).))))..))))))..)))))))))((((.((.......))))))((((((((((.((((((((((...)).))((((((((.((.(((((((..(((........)))))))))).(((((((((.....((......))....)))))))))......((......))..)).))))))))....))))))...))))))))))..).))..))).))))))))))	chr2:238600799-238601265(+)$1	1	114	459	495.0000

#PSSM
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
a : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	A : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
u : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	U : 0.50	
g : 0.50	C : 0.50	
c : 0.50	A : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
a : 0.50	U : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
A : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
G : 0.50	c : 0.50	
C : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
A : 0.50	u : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	

#score	990.0
#seq	2
#width	345
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_UTR_m3_run2.nuc.txt

#NT
cug	chr11:62608990-62609208(-)$1	218	81	84	8.9999
CUG	chr17:74731158-74731384(-)$1	226	23	26	8.9999
CUG	chr12:9264706-9264967(-)$1	261	48	51	8.9999
CUG	chr3:48562984-48563259(-)$1	275	30	33	8.9999
CUG	chr4:887691-887951(-)$1	260	20	23	8.9999
cug	chr7:150774384-150774630(-)$1	246	34	37	8.9999
CUG	chr3:50140352-50140620(+)$1	268	1	4	8.9999
CUG	chr1:226053576-226053824(-)$1	248	38	41	8.9999
CUG	chr17:43013620-43013896(-)$1	276	106	109	8.9999
CUG	chr3:49719010-49719294(+)$1	284	3	6	8.9999
CUG	chr20:34243159-34243402(-)$1	243	18	21	8.9999
CUG	chr1:8074314-8074581(-)$1	267	33	36	8.9999
CUG	chr16:89857824-89858094(-)$1	270	5	8	8.9999
CUG	chr16:22336932-22337189(+)$1	257	9	12	8.9999
CUG	chr6:4062274-4062533(+)$1	259	92	95	8.9999
CUG	chr17:7080518-7080796(-)$1	278	98	101	8.9999
CUG	chr15:34651831-34652120(-)$1	289	32	35	8.9999
CUG	chr2:220079098-220079386(-)$1	288	22	25	8.9999
cug	chr9:34648597-34648889(+)$1	292	62	65	8.9999
CUG	chr2:74592264-74592507(-)$1	243	20	23	8.9999
CUG	chr11:111171094-111171354(+)$1	260	100	103	8.9999
CUG	chr11:64815104-64815395(-)$1	291	25	28	8.9999
CUG	chr16:28969868-28970149(+)$1	281	7	10	8.9999
CUG	chr3:48455364-48455613(-)$1	249	17	20	8.9999
CUG	chr5:134121002-134121291(+)$1	289	61	64	8.9999
CUG	chr17:4788618-4788878(+)$1	260	33	36	8.9999
CUG	chr3:184082598-184082883(+)$1	285	4	7	8.9999
CUG	chr14:54420040-54420295(-)$1	255	5	8	8.9999
CUG	chr22:50686620-50686863(-)$1	243	16	19	8.9999
cug	chr1:36773828-36774091(+)$1	263	39	42	8.9999
CUG	chr2:95825016-95825262(-)$1	246	5	8	8.9999
cug	chr20:62338325-62338603(-)$1	278	51	54	8.9999
CUG	chr12:53862394-53862663(+)$1	269	67	70	8.9999
CUG	chr17:80014772-80015031(+)$1	259	39	42	8.9999
CUG	chr7:150774225-150774469(-)$1	244	15	18	8.9999
CUG	chr12:49318310-49318584(-)$1	274	3	6	8.9999
CUG	chr17:73805669-73805959(+)$1	290	11	14	8.9999
CUG	chr19:54711108-54711361(+)$1	253	31	34	8.9999
CUG	chr16:16248541-16248804(-)$1	263	2	5	8.9999
CUG	chrX:30685981-30686240(+)$1	259	34	37	8.9999
CUG	chr6:56330862-56331132(-)$1	270	5	8	8.9999
CUG	chr10:99517252-99517512(+)$1	260	17	20	8.9999
CUG	chr12:57626826-57627086(+)$1	260	9	12	8.9999
CUG	chr17:72768087-72768373(-)$1	286	7	10	8.9999
CUG	chr14:74754481-74754736(-)$1	255	31	34	8.9999
cug	chr16:2818837-2819116(+)$1	279	6	9	8.9999
CUG	chr1:110168143-110168399(+)$1	256	12	15	8.9999
CUG	chr1:19216506-19216766(-)$1	260	63	66	8.9999
cug	chr11:62609056-62609260(-)$1	204	18	21	8.9999
CUG	chr16:70515269-70515539(-)$1	270	1	4	8.9999
cug	chr17:46053935-46054186(+)$1	251	6	9	8.9999
CUG	chr1:146696530-146696836(-)$1	306	42	45	8.9999
cug	chr2:54096565-54096830(-)$1	265	0	3	8.9999
cug	chr7:44091278-44091535(+)$1	257	0	3	8.9999
CUG	chr1:8075638-8075879(-)$1	241	41	44	8.9999
CUG	chr11:61036371-61036656(-)$1	285	27	30	8.9999
CUG	chr17:41613747-41613996(-)$1	249	29	32	8.9999
CUG	chr16:28915313-28915610(+)$1	297	2	5	8.9999
CUG	chr17:76122944-76123198(-)$1	254	8	11	8.9999
CUG	chr14:21490566-21490811(-)$1	245	23	26	8.9999
CUG	chr17:79866796-79867062(-)$1	266	38	41	8.9999
cug	chr20:43042189-43042460(+)$1	271	21	24	8.9999
CUG	chr20:62669815-62670105(+)$1	290	71	74	8.9999
CUG	chr20:62338444-62338697(-)$1	253	47	50	8.9999
CUG	chr20:62572509-62572775(-)$1	266	28	31	8.9999
cug	chr11:61580738-61580988(-)$1	250	11	14	8.9999
CUG	chr3:48457738-48457984(-)$1	246	34	37	8.9999
CUG	chr19:54971701-54971942(+)$1	241	103	106	8.9999
CUG	chr16:67979335-67979598(-)$1	263	126	129	8.9999
CUG	chr3:186506766-186507015(+)$1	249	64	67	8.9999
CUG	chr17:79986818-79987071(+)$1	253	8	11	8.9999
CUG	chrX:153279624-153279897(-)$1	273	106	109	8.9999
CUG	chr2:242609994-242610241(+)$1	247	19	22	8.9999
CUG	chr5:179048309-179048528(-)$1	219	68	71	8.9999
CUG	chr3:52324826-52325085(+)$1	259	14	17	8.9999
CUG	chr1:1250890-1251124(-)$1	234	83	86	8.9999
CUG	chr3:58519149-58519414(-)$1	265	1	4	8.9999
CUG	chr1:36787174-36787432(+)$1	258	13	16	8.9999
CUG	chr11:64537765-64538031(-)$1	266	56	59	8.9999
CUG	chr12:46752286-46752523(-)$1	237	15	18	8.9999
CUG	chr22:50832172-50832438(+)$1	266	0	3	8.9999
CUG	chr20:43561532-43561819(+)$1	287	6	9	8.9999
CUG	chr10:104492418-104492726(+)$1	308	2	5	8.9999
CUG	chr16:66938-67200(-)$1	262	22	25	8.9999
CUG	chr3:48664377-48664627(-)$1	250	49	52	8.9999
CUG	chr17:74734206-74734487(+)$1	281	35	38	8.9999
CUG	chr14:24634912-24635202(+)$1	290	10	13	8.9999
CUG	chr3:184080974-184081250(+)$1	276	31	34	8.9999
CUG	chr9:138773525-138773781(-)$1	256	5	8	8.9999
CUG	chr16:24815338-24815601(+)$1	263	52	55	8.9999
CUG	chr11:2972444-2972686(-)$1	242	236	239	8.9999
CUG	chr7:99696715-99696967(-)$1	252	11	14	8.9999
CUG	chr1:160188651-160188930(-)$1	279	64	67	8.9999
CUG	chr3:52326152-52326379(+)$1	227	18	21	8.9999
CUG	chr3:49723273-49723534(-)$1	261	73	76	8.9999

#otherMatches

#Struct PSSM
CCC	chr11:57561329-57561607(+)$1	278	21	24	8.9999
GGG	chr11:62608990-62609208(-)$1	218	81	84	8.9999
DDe	chr17:74731158-74731384(-)$1	226	23	26	8.9999
eee	chr12:9264706-9264967(-)$1	261	48	51	8.9999
ddd	chr3:48562984-48563259(-)$1	275	30	33	8.9999
ppe	chr4:887691-887951(-)$1	260	20	23	8.9999
fff	chr7:150774384-150774630(-)$1	246	34	37	8.9999
:::	chr3:50140352-50140620(+)$1	268	1	4	8.9999
uuu	chr1:226053576-226053824(-)$1	248	38	41	8.9999
fff	chr17:43013620-43013896(-)$1	276	106	109	8.9999
::E	chr3:49719010-49719294(+)$1	284	3	6	8.9999
fff	chr20:34243159-34243402(-)$1	243	18	21	8.9999
ccc	chr1:8074314-8074581(-)$1	267	33	36	8.9999
HHH	chr16:89857824-89858094(-)$1	270	5	8	8.9999
CCC	chr16:22336932-22337189(+)$1	257	9	12	8.9999
2ff	chr6:4062274-4062533(+)$1	259	92	95	8.9999
ppp	chr17:7080518-7080796(-)$1	278	98	101	8.9999
ddE	chr15:34651831-34652120(-)$1	289	32	35	8.9999
d[b	chr2:220079098-220079386(-)$1	288	22	25	8.9999
ddd	chr9:34648597-34648889(+)$1	292	62	65	8.9999
ccc	chr2:74592264-74592507(-)$1	243	20	23	8.9999
rrb	chr11:111171094-111171354(+)$1	260	100	103	8.9999
iii	chr11:64815104-64815395(-)$1	291	25	28	8.9999
FF:	chr16:28969868-28970149(+)$1	281	7	10	8.9999
fee	chr3:48455364-48455613(-)$1	249	17	20	8.9999
fff	chr5:134121002-134121291(+)$1	289	61	64	8.9999
ddd	chr17:4788618-4788878(+)$1	260	33	36	8.9999
b[e	chr3:184082598-184082883(+)$1	285	4	7	8.9999
{II	chr14:54420040-54420295(-)$1	255	5	8	8.9999
III	chr22:50686620-50686863(-)$1	243	16	19	8.9999
ccd	chr1:36773828-36774091(+)$1	263	39	42	8.9999
EE{	chr2:95825016-95825262(-)$1	246	5	8	8.9999
hh:	chr20:62338325-62338603(-)$1	278	51	54	8.9999
]dd	chr12:53862394-53862663(+)$1	269	67	70	8.9999
fff	chr17:80014772-80015031(+)$1	259	39	42	8.9999
DKK	chr7:150774225-150774469(-)$1	244	15	18	8.9999
:::	chr12:49318310-49318584(-)$1	274	3	6	8.9999
fff	chr17:73805669-73805959(+)$1	290	11	14	8.9999
fff	chr19:54711108-54711361(+)$1	253	31	34	8.9999
::D	chr16:16248541-16248804(-)$1	263	2	5	8.9999
eee	chrX:30685981-30686240(+)$1	259	34	37	8.9999
:::	chr6:56330862-56331132(-)$1	270	5	8	8.9999
EEE	chr10:99517252-99517512(+)$1	260	17	20	8.9999
fff	chr12:57626826-57627086(+)$1	260	9	12	8.9999
ccc	chr17:72768087-72768373(-)$1	286	7	10	8.9999
fff	chr14:74754481-74754736(-)$1	255	31	34	8.9999
%%%	chr16:2818837-2819116(+)$1	279	6	9	8.9999
eee	chr1:110168143-110168399(+)$1	256	12	15	8.9999
D{C	chr1:19216506-19216766(-)$1	260	63	66	8.9999
I{A	chr11:62609056-62609260(-)$1	204	18	21	8.9999
:ff	chr16:70515269-70515539(-)$1	270	1	4	8.9999
!!c	chr17:46053935-46054186(+)$1	251	6	9	8.9999
ffn	chr1:146696530-146696836(-)$1	306	42	45	8.9999
:::	chr2:54096565-54096830(-)$1	265	0	3	8.9999
:CC	chr7:44091278-44091535(+)$1	257	0	3	8.9999
===	chr1:8075638-8075879(-)$1	241	41	44	8.9999
ddd	chr11:61036371-61036656(-)$1	285	27	30	8.9999
EEE	chr17:41613747-41613996(-)$1	249	29	32	8.9999
cpp	chr16:28915313-28915610(+)$1	297	2	5	8.9999
rrr	chr17:76122944-76123198(-)$1	254	8	11	8.9999
FFF	chr14:21490566-21490811(-)$1	245	23	26	8.9999
fff	chr17:79866796-79867062(-)$1	266	38	41	8.9999
mmm	chr20:43042189-43042460(+)$1	271	21	24	8.9999
a::	chr20:62669815-62670105(+)$1	290	71	74	8.9999
ggg	chr20:62338444-62338697(-)$1	253	47	50	8.9999
fff	chr20:62572509-62572775(-)$1	266	28	31	8.9999
DDD	chr11:61580738-61580988(-)$1	250	11	14	8.9999
FF:	chr3:48457738-48457984(-)$1	246	34	37	8.9999
C{F	chr19:54971701-54971942(+)$1	241	103	106	8.9999
CCC	chr16:67979335-67979598(-)$1	263	126	129	8.9999
GGG	chr3:186506766-186507015(+)$1	249	64	67	8.9999
CC{	chr17:79986818-79987071(+)$1	253	8	11	8.9999
ccc	chrX:153279624-153279897(-)$1	273	106	109	8.9999
fff	chr2:242609994-242610241(+)$1	247	19	22	8.9999
hhh	chr5:179048309-179048528(-)$1	219	68	71	8.9999
GGG	chr3:52324826-52325085(+)$1	259	14	17	8.9999
eee	chr1:1250890-1251124(-)$1	234	83	86	8.9999
:::	chr3:58519149-58519414(-)$1	265	1	4	8.9999
mma	chr1:36787174-36787432(+)$1	258	13	16	8.9999
RRB	chr11:64537765-64538031(-)$1	266	56	59	8.9999
ttt	chr12:46752286-46752523(-)$1	237	15	18	8.9999
FFF	chr22:50832172-50832438(+)$1	266	0	3	8.9999
KDD	chr20:43561532-43561819(+)$1	287	6	9	8.9999
:::	chr10:104492418-104492726(+)$1	308	2	5	8.9999
FFF	chr16:66938-67200(-)$1	262	22	25	8.9999
HHH	chr3:48664377-48664627(-)$1	250	49	52	8.9999
:::	chr17:74734206-74734487(+)$1	281	35	38	8.9999
:::	chr14:24634912-24635202(+)$1	290	10	13	8.9999
2ee	chr3:184080974-184081250(+)$1	276	31	34	8.9999
:::	chr9:138773525-138773781(-)$1	256	5	8	8.9999
ggg	chr16:24815338-24815601(+)$1	263	52	55	8.9999
YA}	chr11:2972444-2972686(-)$1	242	236	239	8.9999
A{B	chr7:99696715-99696967(-)$1	252	11	14	8.9999
ddd	chr1:160188651-160188930(-)$1	279	64	67	8.9999
ELL	chr3:52326152-52326379(+)$1	227	18	21	8.9999
ggl	chr3:49723273-49723534(-)$1	261	73	76	8.9999

#DB
(((	chr11:57561329-57561607(+)$1	1	21	24	8.9999
(((	chr11:62608990-62609208(-)$1	1	81	84	8.9999
(((	chr17:74731158-74731384(-)$1	1	23	26	8.9999
(((	chr12:9264706-9264967(-)$1	1	48	51	8.9999
)))	chr3:48562984-48563259(-)$1	1	30	33	8.9999
..)	chr4:887691-887951(-)$1	1	20	23	8.9999
(((	chr7:150774384-150774630(-)$1	1	34	37	8.9999
...	chr3:50140352-50140620(+)$1	1	1	4	8.9999
...	chr1:226053576-226053824(-)$1	1	38	41	8.9999
)))	chr17:43013620-43013896(-)$1	1	106	109	8.9999
..(	chr3:49719010-49719294(+)$1	1	3	6	8.9999
(((	chr20:34243159-34243402(-)$1	1	18	21	8.9999
)))	chr1:8074314-8074581(-)$1	1	33	36	8.9999
(((	chr16:89857824-89858094(-)$1	1	5	8	8.9999
(((	chr16:22336932-22337189(+)$1	1	9	12	8.9999
.))	chr6:4062274-4062533(+)$1	1	92	95	8.9999
...	chr17:7080518-7080796(-)$1	1	98	101	8.9999
))(	chr15:34651831-34652120(-)$1	1	32	35	8.9999
(.(	chr2:220079098-220079386(-)$1	1	22	25	8.9999
)))	chr9:34648597-34648889(+)$1	1	62	65	8.9999
)))	chr2:74592264-74592507(-)$1	1	20	23	8.9999
..)	chr11:111171094-111171354(+)$1	1	100	103	8.9999
(((	chr11:64815104-64815395(-)$1	1	25	28	8.9999
((.	chr16:28969868-28970149(+)$1	1	7	10	8.9999
)((	chr3:48455364-48455613(-)$1	1	17	20	8.9999
)))	chr5:134121002-134121291(+)$1	1	61	64	8.9999
(((	chr17:4788618-4788878(+)$1	1	33	36	8.9999
(.(	chr3:184082598-184082883(+)$1	1	4	7	8.9999
.((	chr14:54420040-54420295(-)$1	1	5	8	8.9999
(((	chr22:50686620-50686863(-)$1	1	16	19	8.9999
)))	chr1:36773828-36774091(+)$1	1	39	42	8.9999
((.	chr2:95825016-95825262(-)$1	1	5	8	8.9999
)).	chr20:62338325-62338603(-)$1	1	51	54	8.9999
.))	chr12:53862394-53862663(+)$1	1	67	70	8.9999
(((	chr17:80014772-80015031(+)$1	1	39	42	8.9999
(..	chr7:150774225-150774469(-)$1	1	15	18	8.9999
...	chr12:49318310-49318584(-)$1	1	3	6	8.9999
(((	chr17:73805669-73805959(+)$1	1	11	14	8.9999
)))	chr19:54711108-54711361(+)$1	1	31	34	8.9999
..(	chr16:16248541-16248804(-)$1	1	2	5	8.9999
(((	chrX:30685981-30686240(+)$1	1	34	37	8.9999
...	chr6:56330862-56331132(-)$1	1	5	8	8.9999
(((	chr10:99517252-99517512(+)$1	1	17	20	8.9999
(((	chr12:57626826-57627086(+)$1	1	9	12	8.9999
(((	chr17:72768087-72768373(-)$1	1	7	10	8.9999
(((	chr14:74754481-74754736(-)$1	1	31	34	8.9999
...	chr16:2818837-2819116(+)$1	1	6	9	8.9999
(((	chr1:110168143-110168399(+)$1	1	12	15	8.9999
(.(	chr1:19216506-19216766(-)$1	1	63	66	8.9999
(.(	chr11:62609056-62609260(-)$1	1	18	21	8.9999
.((	chr16:70515269-70515539(-)$1	1	1	4	8.9999
..(	chr17:46053935-46054186(+)$1	1	6	9	8.9999
((.	chr1:146696530-146696836(-)$1	1	42	45	8.9999
...	chr2:54096565-54096830(-)$1	1	0	3	8.9999
.((	chr7:44091278-44091535(+)$1	1	0	3	8.9999
(((	chr1:8075638-8075879(-)$1	1	41	44	8.9999
)))	chr11:61036371-61036656(-)$1	1	27	30	8.9999
(((	chr17:41613747-41613996(-)$1	1	29	32	8.9999
(..	chr16:28915313-28915610(+)$1	1	2	5	8.9999
...	chr17:76122944-76123198(-)$1	1	8	11	8.9999
(((	chr14:21490566-21490811(-)$1	1	23	26	8.9999
)))	chr17:79866796-79867062(-)$1	1	38	41	8.9999
...	chr20:43042189-43042460(+)$1	1	21	24	8.9999
)..	chr20:62669815-62670105(+)$1	1	71	74	8.9999
)))	chr20:62338444-62338697(-)$1	1	47	50	8.9999
(((	chr20:62572509-62572775(-)$1	1	28	31	8.9999
(((	chr11:61580738-61580988(-)$1	1	11	14	8.9999
((.	chr3:48457738-48457984(-)$1	1	34	37	8.9999
(.(	chr19:54971701-54971942(+)$1	1	103	106	8.9999
(((	chr16:67979335-67979598(-)$1	1	126	129	8.9999
)))	chr3:186506766-186507015(+)$1	1	64	67	8.9999
((.	chr17:79986818-79987071(+)$1	1	8	11	8.9999
(((	chrX:153279624-153279897(-)$1	1	106	109	8.9999
(((	chr2:242609994-242610241(+)$1	1	19	22	8.9999
)))	chr5:179048309-179048528(-)$1	1	68	71	8.9999
(((	chr3:52324826-52325085(+)$1	1	14	17	8.9999
(((	chr1:1250890-1251124(-)$1	1	83	86	8.9999
...	chr3:58519149-58519414(-)$1	1	1	4	8.9999
..)	chr1:36787174-36787432(+)$1	1	13	16	8.9999
..(	chr11:64537765-64538031(-)$1	1	56	59	8.9999
...	chr12:46752286-46752523(-)$1	1	15	18	8.9999
(((	chr22:50832172-50832438(+)$1	1	0	3	8.9999
.((	chr20:43561532-43561819(+)$1	1	6	9	8.9999
...	chr10:104492418-104492726(+)$1	1	2	5	8.9999
(((	chr16:66938-67200(-)$1	1	22	25	8.9999
(((	chr3:48664377-48664627(-)$1	1	49	52	8.9999
...	chr17:74734206-74734487(+)$1	1	35	38	8.9999
...	chr14:24634912-24635202(+)$1	1	10	13	8.9999
.))	chr3:184080974-184081250(+)$1	1	31	34	8.9999
...	chr9:138773525-138773781(-)$1	1	5	8	8.9999
(((	chr16:24815338-24815601(+)$1	1	52	55	8.9999
.).	chr11:2972444-2972686(-)$1	1	236	239	8.9999
(.(	chr7:99696715-99696967(-)$1	1	11	14	8.9999
(((	chr1:160188651-160188930(-)$1	1	64	67	8.9999
(..	chr3:52326152-52326379(+)$1	1	18	21	8.9999
((.	chr3:49723273-49723534(-)$1	1	73	76	8.9999

#PSSM
C : 0.87	c : 0.12	
U : 0.87	u : 0.12	
G : 0.87	g : 0.12	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_transcript_m1_run2.nuc.txt

#NT
GGGGAAGGG	chr19:2271016-2271283(+)$1	267	89	98	18.5094
ggggaggag	chr9:136820226-136820542(-)$1	316	2	11	18.8867
GGGGAGGGA	chr1:161087990-161088280(+)$1	290	68	77	19.0754
ggggagggg	chr13:27745069-27745350(-)$1	281	44	53	23.2264
GGGGAGGGG	chr17:58469149-58469460(-)$1	311	224	233	23.2264
GGGGAGUGG	chr7:2674119-2674362(+)$1	243	42	51	19.0754
GGAGAGGGG	chrM:14239-14451(-)$1	212	161	170	19.1698
GGGGAGGGG	chr15:60883551-60883814(-)$1	263	99	108	23.2264
GGGGAGGAG	chr7:77166501-77166749(+)$1	248	216	225	18.8867
ggggaggga	chr9:136534439-136534804(-)$1	365	330	339	19.0754
GGGGCGGGG	chr20:62370407-62370688(+)$1	281	90	99	19.0754
GGGGAUGGG	chr9:137256846-137257096(+)$1	250	36	45	18.5094
GGGGAGGGG	chr11:776816-777124(-)$1	308	114	123	23.2264
GGAGAGGGG	chrM:14232-14435(-)$1	203	145	154	19.1698
GAGGAGGGG	chr22:50723006-50723246(-)$1	240	71	80	18.5094
GGGGAGGGU	chr6:33179568-33179819(+)$1	251	91	100	18.8867
GGGGAGGGC	chr7:150777514-150777882(-)$1	368	128	137	18.9811
UGGGAGGGG	chr4:74123670-74123937(-)$1	267	6	15	19.1698
GGGGUGGGG	chr20:31170406-31170681(+)$1	275	88	97	19.3584
GGGGAGGGG	chr16:30959821-30960156(+)$1	335	38	47	23.2264
GGGGUGGGG	chr12:69202435-69202701(+)$1	266	69	78	19.3584
AGGGAGGGG	chr14:64971275-64971548(+)$1	273	92	101	18.9811
GGGGAGAGG	chr19:19639789-19640068(+)$1	279	18	27	19.0754
GGGGAGGGG	chr2:28974736-28974994(+)$1	258	94	103	23.2264
GUGGAGGGG	chr14:102182444-102182705(-)$1	261	16	25	18.5094
GGGGUGGGG	chr8:145027250-145027503(-)$1	253	66	75	19.3584
GGGGAGGGG	chr16:88583194-88583471(+)$1	277	23	32	23.2264
GGGAAGGGG	chr12:76478106-76478382(-)$1	276	57	66	18.5094
UGGGAGGGG	chr1:19436787-19437001(-)$1	214	188	197	19.1698
GGGGUGGGG	chr11:925021-925317(+)$1	296	78	87	19.3584
ggggagggg	chr21:44394957-44395196(+)$1	239	7	16	23.2264
GGGGCGGGG	chr7:157659239-157659498(-)$1	259	4	13	19.0754
GGGCAGGGG	chr17:80188381-80188687(+)$1	306	256	265	18.5094
GGGGAGGGG	chr4:83931828-83932088(-)$1	260	82	91	23.2264
GGAGAGGGG	chr9:136533115-136533414(-)$1	299	126	135	19.1698
UGGGAGGGG	chr9:137308235-137308502(+)$1	267	188	197	19.1698
AGGGAGGGG	chr2:120189534-120189793(+)$1	259	37	46	18.9811
GGGGAGAGG	chr8:142412191-142412422(+)$1	231	5	14	19.0754
GGAGAGGGG	chrM:14179-14384(-)$1	205	94	103	19.1698
GGGGUGGGG	chr10:21785873-21786177(-)$1	304	74	83	19.3584
ggggagggg	chr15:64752854-64753156(+)$1	302	18	27	23.2264
GGGGAGUGG	chr13:113762940-113763179(+)$1	239	211	220	19.0754
GGGGAGGGA	chr11:702680-702943(-)$1	263	16	25	19.0754
GGGGAGGCG	chr2:61764451-61764738(-)$1	287	238	247	18.6981
GGGGAGGGC	chr17:80192391-80192664(+)$1	273	137	146	18.9811
GGGGAGGGG	chr14:55255837-55256110(+)$1	273	61	70	23.2264
ggggagggg	chr2:242447643-242447894(-)$1	251	73	82	23.2264
GGGGAGAGG	chr11:65192410-65192646(+)$1	236	45	54	19.0754
GGGGAGUGG	chr10:102758870-102759104(+)$1	234	94	103	19.0754
ggagagggg	chr2:54197821-54198044(-)$1	223	60	69	19.1698
UGGGAGGGG	chr2:241562865-241563111(+)$1	246	161	170	19.1698
GGGGAGGAG	chr4:1216789-1217051(-)$1	262	67	76	18.8867

#otherMatches

#Struct PSSM
A::::hhhh	chr17:45771597-45771852(+)$1	255	223	232	23.2264
UUUUUHHHH	chr19:2271016-2271283(+)$1	267	89	98	18.5094
DD{DDDD{B	chr9:136820226-136820542(-)$1	316	2	11	18.8867
hh:::::::	chr1:161087990-161088280(+)$1	290	68	77	19.0754
ooobb333c	chr13:27745069-27745350(-)$1	281	44	53	23.2264
B|||||||D	chr17:58469149-58469460(-)$1	311	224	233	23.2264
mmmmcccff	chr7:2674119-2674362(+)$1	243	42	51	19.0754
dd::::fff	chrM:14239-14451(-)$1	212	161	170	19.1698
dEEEEE{CC	chr15:60883551-60883814(-)$1	263	99	108	23.2264
xxxxxxxxx	chr7:77166501-77166749(+)$1	248	216	225	18.8867
ZBBYYGGGG	chr9:136534439-136534804(-)$1	365	330	339	19.0754
]eeeee]cc	chr20:62370407-62370688(+)$1	281	90	99	19.0754
))))))))a	chr9:137256846-137257096(+)$1	250	36	45	18.5094
ddppppppp	chr11:776816-777124(-)$1	308	114	123	23.2264
dd::::fff	chrM:14232-14435(-)$1	203	145	154	19.1698
::ccc[ddd	chr22:50723006-50723246(-)$1	240	71	80	18.5094
cc666666=	chr6:33179568-33179819(+)$1	251	91	100	18.8867
oooocccee	chr7:150777514-150777882(-)$1	368	128	137	18.9811
f[bbhhhhh	chr4:74123670-74123937(-)$1	267	6	15	19.1698
!bb[dddd#	chr20:31170406-31170681(+)$1	275	88	97	19.3584
###ddddcc	chr16:30959821-30960156(+)$1	335	38	47	23.2264
b[ccc####	chr12:69202435-69202701(+)$1	266	69	78	19.3584
{FFFFFF::	chr14:64971275-64971548(+)$1	273	92	101	18.9811
ttttttttt	chr19:19639789-19640068(+)$1	279	18	27	19.0754
EE{A{DDDD	chr2:28974736-28974994(+)$1	258	94	103	23.2264
!ffffffqq	chr14:102182444-102182705(-)$1	261	16	25	18.5094
JJJJJJJJJ	chr8:145027250-145027503(-)$1	253	66	75	19.3584
hhhhhhhh!	chr16:88583194-88583471(+)$1	277	23	32	23.2264
3bb22dddd	chr12:76478106-76478382(-)$1	276	57	66	18.5094
JJJJJJJJJ	chr1:19436787-19437001(-)$1	214	188	197	19.1698
ffff=====	chr11:925021-925317(+)$1	296	78	87	19.3584
!!aqqqqqq	chr21:44394957-44395196(+)$1	239	7	16	23.2264
EEEE{EEEE	chr7:157659239-157659498(-)$1	259	4	13	19.0754
FFFYYGGGG	chr17:80188381-80188687(+)$1	306	256	265	18.5094
]ffffff]a	chr4:83931828-83932088(-)$1	260	82	91	23.2264
eee]cccff	chr9:136533115-136533414(-)$1	299	126	135	19.1698
::bb[ffff	chr9:137308235-137308502(+)$1	267	188	197	19.1698
$$$$$gggg	chr2:120189534-120189793(+)$1	259	37	46	18.9811
:::CCC{II	chr8:142412191-142412422(+)$1	231	5	14	19.0754
g$$$$$a[e	chrM:14179-14384(-)$1	205	94	103	19.1698
mmiiiiiii	chr10:21785873-21786177(-)$1	304	74	83	19.3584
[bb$$$$$c	chr15:64752854-64753156(+)$1	302	18	27	23.2264
HHH}A}A}A	chr13:113762940-113763179(+)$1	239	211	220	19.0754
:::::ccc!	chr11:702680-702943(-)$1	263	16	25	19.0754
eeiiiiiii	chr2:61764451-61764738(-)$1	287	238	247	18.6981
cccnnnnnc	chr17:80192391-80192664(+)$1	273	137	146	18.9811
fffffmmmm	chr14:55255837-55256110(+)$1	273	61	70	23.2264
%%%%%%ggg	chr2:242447643-242447894(-)$1	251	73	82	23.2264
^^^^^^^^^	chr11:65192410-65192646(+)$1	236	45	54	19.0754
rrrrrrrrr	chr10:102758870-102759104(+)$1	234	94	103	19.0754
7777777a]	chr2:54197821-54198044(-)$1	223	60	69	19.1698
ppppcccdd	chr2:241562865-241563111(+)$1	246	161	170	19.1698
EEEEE{AKK	chr4:1216789-1217051(-)$1	262	67	76	18.8867

#DB
)....((((	chr17:45771597-45771852(+)$1	1	223	232	23.2264
.....((((	chr19:2271016-2271283(+)$1	1	89	98	18.5094
((.((((.(	chr9:136820226-136820542(-)$1	1	2	11	18.8867
)).......	chr1:161087990-161088280(+)$1	1	68	77	19.0754
...))...)	chr13:27745069-27745350(-)$1	1	44	53	23.2264
).......)	chr17:58469149-58469460(-)$1	1	224	233	23.2264
....)))))	chr7:2674119-2674362(+)$1	1	42	51	19.0754
))....(((	chrM:14239-14451(-)$1	1	161	170	19.1698
)(((((.((	chr15:60883551-60883814(-)$1	1	99	108	23.2264
.........	chr7:77166501-77166749(+)$1	1	216	225	18.8867
.))..))))	chr9:136534439-136534804(-)$1	1	330	339	19.0754
.))))).))	chr20:62370407-62370688(+)$1	1	90	99	19.0754
........(	chr9:137256846-137257096(+)$1	1	36	45	18.5094
((.......	chr11:776816-777124(-)$1	1	114	123	23.2264
))....(((	chrM:14232-14435(-)$1	1	145	154	19.1698
..(((.(((	chr22:50723006-50723246(-)$1	1	71	80	18.5094
))......)	chr6:33179568-33179819(+)$1	1	91	100	18.8867
....)))((	chr7:150777514-150777882(-)$1	1	128	137	18.9811
(.(((((((	chr4:74123670-74123937(-)$1	1	6	15	19.1698
.((.((((.	chr20:31170406-31170681(+)$1	1	88	97	19.3584
...((((((	chr16:30959821-30960156(+)$1	1	38	47	23.2264
(.(((....	chr12:69202435-69202701(+)$1	1	69	78	19.3584
.((((((..	chr14:64971275-64971548(+)$1	1	92	101	18.9811
.........	chr19:19639789-19640068(+)$1	1	18	27	19.0754
((.(.((((	chr2:28974736-28974994(+)$1	1	94	103	23.2264
.((((((..	chr14:102182444-102182705(-)$1	1	16	25	18.5094
(((((((((	chr8:145027250-145027503(-)$1	1	66	75	19.3584
((((((((.	chr16:88583194-88583471(+)$1	1	23	32	23.2264
.))..))))	chr12:76478106-76478382(-)$1	1	57	66	18.5094
)))))))))	chr1:19436787-19437001(-)$1	1	188	197	19.1698
(((((((((	chr11:925021-925317(+)$1	1	78	87	19.3584
..(......	chr21:44394957-44395196(+)$1	1	7	16	23.2264
((((.((((	chr7:157659239-157659498(-)$1	1	4	13	19.0754
)))..))))	chr17:80188381-80188687(+)$1	1	256	265	18.5094
.)))))).)	chr4:83931828-83932088(-)$1	1	82	91	23.2264
))).)))((	chr9:136533115-136533414(-)$1	1	126	135	19.1698
..((.((((	chr9:137308235-137308502(+)$1	1	188	197	19.1698
.....((((	chr2:120189534-120189793(+)$1	1	37	46	18.9811
...(((.((	chr8:142412191-142412422(+)$1	1	5	14	19.0754
(.....(.(	chrM:14179-14384(-)$1	1	94	103	19.1698
..)))))))	chr10:21785873-21786177(-)$1	1	74	83	19.3584
.((.....(	chr15:64752854-64753156(+)$1	1	18	27	23.2264
))).).).)	chr13:113762940-113763179(+)$1	1	211	220	19.0754
.....(((.	chr11:702680-702943(-)$1	1	16	25	19.0754
)))))))))	chr2:61764451-61764738(-)$1	1	238	247	18.6981
(((.....)	chr17:80192391-80192664(+)$1	1	137	146	18.9811
(((((....	chr14:55255837-55256110(+)$1	1	61	70	23.2264
......(((	chr2:242447643-242447894(-)$1	1	73	82	23.2264
.........	chr11:65192410-65192646(+)$1	1	45	54	19.0754
.........	chr10:102758870-102759104(+)$1	1	94	103	19.0754
.......).	chr2:54197821-54198044(-)$1	1	60	69	19.1698
....)))))	chr2:241562865-241563111(+)$1	1	161	170	19.1698
(((((.(..	chr4:1216789-1217051(-)$1	1	67	76	18.8867

#PSSM
G : 0.75	g : 0.13	U : 0.07	A : 0.03	
G : 0.83	g : 0.13	A : 0.01	U : 0.01	
G : 0.79	g : 0.11	A : 0.07	a : 0.01	
G : 0.83	g : 0.13	A : 0.01	C : 0.01	
A : 0.73	a : 0.13	U : 0.09	C : 0.03	
G : 0.83	g : 0.13	A : 0.01	U : 0.01	
G : 0.75	g : 0.13	U : 0.05	A : 0.05	
G : 0.81	g : 0.11	A : 0.03	a : 0.01	C : 0.01	
G : 0.77	g : 0.11	A : 0.03	C : 0.03	a : 0.01	U : 0.01	

#score	1062.3207547169807
#seq	53
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_CDS_m1_run2.nuc.txt

#NT
AGAGGACUCCUUUUGCCUCCGCCGACCCCUUCGCUUCCGCUCCGCGUUCCCACAAUGCAGUGCGGCUGAGCGCCUCGGAGCCCGCGGGGACGCUGCGGGGGGACCCGUGCUGAggcggcggcggcgacgugggcugcggcgggcccgcggcgucgggcggugcggaugucgggcugggcggacgagcgcggcggcgagggcgacggGCGCAUCUACGUGGGGAACCUUCCGACCGACGUGCGCGAGAAGGACUUGGAGGACCUGUUCUACAAGUACGGCCGCAUCCGCGAGAUCGAGCUCAAGAACCGGCACGGCCUCGUGCCCUUCGCCUUCGUGCGCUUCGAGGACCCCC	chr12:120907211-120907603(-)$1	392	26	378	501.0000

#otherMatches

#Struct PSSM
GGGG::::cccbb[bbnnnnnbb]bb]cccDDDDBB{CCCHHHHHHHH{DDDDKKGGGGGGGHHHHHHHH:::iiiiiiiii[cccqqqqqqqqccciiiiiiiiiffffff!!a[dddd"""a[ddddmmmmdddd]a]dddd]a22ffffff::::eeeee[eeeeecccmmmmccc]eeeee]eeeee:HHHHHHHHYYGGGGGGGYYDDDD}HHHHHHHHZZZCCC}BB}DDDD}GGGGGGG:ccc[cccmmmmccc]ccc:::ccc[eeeee[===========ffffffbb[dddd[a[eeeee"""ffffffnnnnnffffff333eeeee]a22dddd]bb444	chr5:218342-218745(+)$1	403	6	358	501.0000
ggggglllggggggg::FFFFFF{A{CCCLLLBB{EEEEE{DDDD:::bbcccooooooccc]bbccc!!hhhhhhhh####ffffff!!a[bblllbb]a22ffffffhhhhhhhh]ccceeeee[hhhhhhhhoooooohhhhhhhh]eeeee:DDDD}EEEEE}BB}CCC}A}FFFFFF}IIIIIIIII}DDDD::::::DDDD{BB{BBKKBB{DDDDNNNNNCCCLLLCCCLLLEEEEE{EEEEELLLFFFFFF::a[eeeee"""ccc[cccacccmmmmccc]a]ccc]ccc22eeeee]aeeeeemmmmeeeeeFFFFFFEEEEE}EEEEE}CCC}CCCDDDDB	chr12:120907211-120907603(-)$1	392	26	378	501.0000

#DB
((((....(((((.((.....)).)).)))((((((.(((((((((((.((((..(((((((((((((((...(((((((((.(((........))))))))))))((((((..(.((((...(.((((....)))).).)))).)..))))))....(((((.((((((((....))).))))).))))).))))))))..)))))))..)))).))))))))...))).)).)))).))))))).(((.(((....))).)))...(((.(((((.(((((((((((((((((((.((((.(.(((((...((((((.....))))))...))))).)..)))).))...	chr5:218342-218745(+)$1	1	6	358	501.0000
(((((...)))))))..((((((.(.(((...((.(((((.((((...(((((......))).))(((..((((((((....((((((..(.((...)).)..)))))))))))))).)))(((((.((((((((......)))))))).))))).)))).))))).)).))).).)))))).))))))))).))))......((((.((.((..((.((((.....(((...(((...(((((.(((((...((((((..(.(((((...(((.(((((((....))).).))).)))..))))).)(((((....)))))))))))))))).))))).))).))))))))	chr12:120907211-120907603(-)$1	1	26	378	501.0000

#PSSM
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	g : 0.50	
C : 0.50	a : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
C : 0.50	c : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	u : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	u : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	u : 0.50	
C : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
a : 1.00	
c : 1.00	
c : 0.50	g : 0.50	
g : 1.00	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	A : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	A : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	U : 0.50	
a : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
u : 0.50	C : 0.50	
a : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
c : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
u : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	U : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	C : 0.50	

#score	1002.0
#seq	2
#width	352
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_CDS_m2_run1.nuc.txt

#NT
GAAGA	chr9:139734997-139735245(+)$1	248	99	104	14.9999
GAAGA	chr9:100774608-100774829(+)$1	221	94	99	14.9999
GAAGA	chr10:105761923-105762136(+)$1	213	57	62	14.9999
GAAGA	chr1:154148611-154148821(-)$1	210	142	147	14.9999
GAAGA	chr14:102551021-102551256(-)$1	235	14	19	14.9999
GAAGA	chr10:1062954-1063264(+)$1	310	65	70	14.9999
gaaga	chr1:16891198-16891504(-)$1	306	113	118	14.9999
gaaga	chr9:100777545-100777747(+)$1	202	105	110	14.9999
GAAGA	chr4:145974804-145975061(-)$1	257	150	155	14.9999
gaaga	chr6:44218186-44218427(+)$1	241	2	7	14.9999
GAAGA	chr5:162905589-162905881(+)$1	292	191	196	14.9999
GAAGA	chr4:73968001-73968278(-)$1	277	20	25	14.9999
GAAGA	chr1:109241858-109242095(+)$1	237	89	94	14.9999
GAAGA	chrX:135593971-135594255(+)$1	284	0	5	14.9999
GAAGA	chr20:39721066-39721310(+)$1	244	49	54	14.9999
GAAGA	chr10:105762566-105762846(+)$1	280	56	61	14.9999
GAAGA	chr3:37367821-37368080(+)$1	259	11	16	14.9999
GAAGA	chr10:71151931-71152164(+)$1	233	209	214	14.9999
GAAGA	chr1:94341960-94342217(-)$1	257	101	106	14.9999
gaaga	chr21:47612911-47613147(-)$1	236	65	70	14.9999
GAAGA	chr18:55282771-55283003(-)$1	232	44	49	14.9999
gaaga	chr1:235377157-235377416(-)$1	259	91	96	14.9999
GAAGA	chr6:26156969-26157220(+)$1	251	53	58	14.9999
gaaga	chr9:131456178-131456383(+)$1	205	14	19	14.9999
GAAGA	chr18:55282803-55283034(-)$1	231	75	80	14.9999
GAAGA	chr21:40883510-40883764(+)$1	254	99	104	14.9999
gaaga	chr14:102551056-102551272(-)$1	216	0	5	14.9999
GAAGA	chr20:30381596-30381832(+)$1	236	54	59	14.9999
GAAGA	chr15:69072648-69072861(-)$1	213	55	60	14.9999
gaaga	chr4:174253129-174253345(-)$1	216	30	35	14.9999
GAAGA	chr9:100774648-100774854(+)$1	206	54	59	14.9999
GAAGA	chr1:94341723-94341971(-)$1	248	2	7	14.9999
GAAGA	chr6:26056058-26056306(-)$1	248	90	95	14.9999
GAAGA	chr2:170667341-170667650(+)$1	309	160	165	14.9999
GAAGA	chr7:43540205-43540415(+)$1	210	5	10	14.9999
GAAGA	chrX:53610707-53610947(-)$1	240	163	168	14.9999
gaaga	chr9:131456183-131456389(+)$1	206	9	14	14.9999
GAAGA	chr9:80646048-80646334(-)$1	286	178	183	14.9999
GAAGA	chr22:24313477-24313756(-)$1	279	176	181	14.9999
GAAGA	chr12:6879222-6879438(+)$1	216	13	18	14.9999
gaaga	chr9:131456164-131456378(+)$1	214	28	33	14.9999
GAAGA	chr3:25654063-25654295(-)$1	232	178	183	14.9999
gaaga	chr5:149777853-149778097(+)$1	244	91	96	14.9999
GAAGA	chr17:38244367-38244603(+)$1	236	136	141	14.9999
gaaga	chr9:131456127-131456364(+)$1	237	65	70	14.9999
gaaga	chr13:31035425-31035661(-)$1	236	75	80	14.9999
gaaga	chr1:90493079-90493349(+)$1	270	121	126	14.9999
gaaga	chr14:102551017-102551221(-)$1	204	18	23	14.9999
GAAGA	chr4:140291409-140291651(+)$1	242	0	5	14.9999
gaaga	chr11:129991588-129991806(+)$1	218	58	63	14.9999
GAAGA	chr12:6692363-6692597(-)$1	234	56	61	14.9999
GAAGA	chr18:55282834-55283054(-)$1	220	95	100	14.9999
GAAGA	chr9:100774629-100774848(+)$1	219	73	78	14.9999
gaaga	chr9:100777547-100777800(+)$1	253	103	108	14.9999
gaaga	chr5:71491259-71491569(+)$1	310	68	73	14.9999
GAAGA	chr15:25615889-25616130(-)$1	241	43	48	14.9999
GAAGA	chr9:134353799-134354063(+)$1	264	174	179	14.9999
GAAGA	chr9:37126797-37127039(+)$1	242	12	17	14.9999
GAAGA	chr1:67425296-67425527(+)$1	231	76	81	14.9999
gaaga	chr9:131456194-131456419(+)$1	225	13	18	14.9999
gaaga	chr1:150195410-150195661(-)$1	251	98	103	14.9999
GAAGA	chr12:76449816-76450021(-)$1	205	107	112	14.9999
gaaga	chr9:100773523-100773771(+)$1	248	34	39	14.9999
GAAGA	chr19:10488978-10489217(-)$1	239	54	59	14.9999
GAAGA	chr5:145883286-145883535(+)$1	249	241	246	14.9999
GAAGA	chr10:32319943-32320241(-)$1	298	115	120	14.9999
GAAGA	chr12:76449778-76450000(-)$1	222	86	91	14.9999
gaaga	chr21:47612962-47613173(-)$1	211	91	96	14.9999

#otherMatches

#Struct PSSM
HHHHH	chr12:76449711-76449951(-)$1	240	37	42	14.9999
c!!hh	chr9:139734997-139735245(+)$1	248	99	104	14.9999
nnngg	chr9:100774608-100774829(+)$1	221	94	99	14.9999
a]ggg	chr10:105761923-105762136(+)$1	213	57	62	14.9999
ttttt	chr1:154148611-154148821(-)$1	210	142	147	14.9999
mmmcc	chr14:102551021-102551256(-)$1	235	14	19	14.9999
ppppp	chr10:1062954-1063264(+)$1	310	65	70	14.9999
b::::	chr1:16891198-16891504(-)$1	306	113	118	14.9999
bb333	chr9:100777545-100777747(+)$1	202	105	110	14.9999
ggggg	chr4:145974804-145975061(-)$1	257	150	155	14.9999
:::ff	chr6:44218186-44218427(+)$1	241	2	7	14.9999
!!ddd	chr5:162905589-162905881(+)$1	292	191	196	14.9999
%%%%%	chr4:73968001-73968278(-)$1	277	20	25	14.9999
D::FF	chr1:109241858-109242095(+)$1	237	89	94	14.9999
:::GG	chrX:135593971-135594255(+)$1	284	0	5	14.9999
fffff	chr20:39721066-39721310(+)$1	244	49	54	14.9999
'''''	chr10:105762566-105762846(+)$1	280	56	61	14.9999
:HHHH	chr3:37367821-37368080(+)$1	259	11	16	14.9999
@@@@@	chr10:71151931-71152164(+)$1	233	209	214	14.9999
ccc55	chr1:94341960-94342217(-)$1	257	101	106	14.9999
bb]a3	chr21:47612911-47613147(-)$1	236	65	70	14.9999
OOOOO	chr18:55282771-55283003(-)$1	232	44	49	14.9999
^^^^^	chr1:235377157-235377416(-)$1	259	91	96	14.9999
:::a!	chr6:26156969-26157220(+)$1	251	53	58	14.9999
KKEEE	chr9:131456178-131456383(+)$1	205	14	19	14.9999
f::::	chr18:55282803-55283034(-)$1	231	75	80	14.9999
EEEE?	chr21:40883510-40883764(+)$1	254	99	104	14.9999
:::::	chr14:102551056-102551272(-)$1	216	0	5	14.9999
d!!cc	chr20:30381596-30381832(+)$1	236	54	59	14.9999
:iiii	chr15:69072648-69072861(-)$1	213	55	60	14.9999
:::::	chr4:174253129-174253345(-)$1	216	30	35	14.9999
!ccct	chr9:100774648-100774854(+)$1	206	54	59	14.9999
CKKDD	chr1:94341723-94341971(-)$1	248	2	7	14.9999
:::::	chr6:26056058-26056306(-)$1	248	90	95	14.9999
fffff	chr2:170667341-170667650(+)$1	309	160	165	14.9999
JJJJJ	chr7:43540205-43540415(+)$1	210	5	10	14.9999
EYYCC	chrX:53610707-53610947(-)$1	240	163	168	14.9999
:::::	chr9:131456183-131456389(+)$1	206	9	14	14.9999
hhqqq	chr9:80646048-80646334(-)$1	286	178	183	14.9999
ffffd	chr22:24313477-24313756(-)$1	279	176	181	14.9999
::bb[	chr12:6879222-6879438(+)$1	216	13	18	14.9999
^^^^^	chr9:131456164-131456378(+)$1	214	28	33	14.9999
hh)))	chr3:25654063-25654295(-)$1	232	178	183	14.9999
:::::	chr5:149777853-149778097(+)$1	244	91	96	14.9999
c!!cc	chr17:38244367-38244603(+)$1	236	136	141	14.9999
=====	chr9:131456127-131456364(+)$1	237	65	70	14.9999
:::::	chr13:31035425-31035661(-)$1	236	75	80	14.9999
^^^^^	chr1:90493079-90493349(+)$1	270	121	126	14.9999
B::::	chr14:102551017-102551221(-)$1	204	18	23	14.9999
:::a[	chr4:140291409-140291651(+)$1	242	0	5	14.9999
EEEE{	chr11:129991588-129991806(+)$1	218	58	63	14.9999
ccccc	chr12:6692363-6692597(-)$1	234	56	61	14.9999
f::::	chr18:55282834-55283054(-)$1	220	95	100	14.9999
!ccct	chr9:100774629-100774848(+)$1	219	73	78	14.9999
bb333	chr9:100777547-100777800(+)$1	253	103	108	14.9999
:::::	chr5:71491259-71491569(+)$1	310	68	73	14.9999
+++++	chr15:25615889-25616130(-)$1	241	43	48	14.9999
^^^^^	chr9:134353799-134354063(+)$1	264	174	179	14.9999
DDDDD	chr9:37126797-37127039(+)$1	242	12	17	14.9999
JJJJJ	chr1:67425296-67425527(+)$1	231	76	81	14.9999
:::::	chr9:131456194-131456419(+)$1	225	13	18	14.9999
fffff	chr1:150195410-150195661(-)$1	251	98	103	14.9999
d]ddd	chr12:76449816-76450021(-)$1	205	107	112	14.9999
^^^^^	chr9:100773523-100773771(+)$1	248	34	39	14.9999
####d	chr19:10488978-10489217(-)$1	239	54	59	14.9999
:::::	chr5:145883286-145883535(+)$1	249	241	246	14.9999
nnccc	chr10:32319943-32320241(-)$1	298	115	120	14.9999
d]ddd	chr12:76449778-76450000(-)$1	222	86	91	14.9999
bb]a3	chr21:47612962-47613173(-)$1	211	91	96	14.9999

#DB
(((((	chr12:76449711-76449951(-)$1	1	37	42	14.9999
(..((	chr9:139734997-139735245(+)$1	1	99	104	14.9999
...))	chr9:100774608-100774829(+)$1	1	94	99	14.9999
).)))	chr10:105761923-105762136(+)$1	1	57	62	14.9999
.....	chr1:154148611-154148821(-)$1	1	142	147	14.9999
...))	chr14:102551021-102551256(-)$1	1	14	19	14.9999
.....	chr10:1062954-1063264(+)$1	1	65	70	14.9999
)....	chr1:16891198-16891504(-)$1	1	113	118	14.9999
))...	chr9:100777545-100777747(+)$1	1	105	110	14.9999
)))))	chr4:145974804-145975061(-)$1	1	150	155	14.9999
...((	chr6:44218186-44218427(+)$1	1	2	7	14.9999
..(((	chr5:162905589-162905881(+)$1	1	191	196	14.9999
.....	chr4:73968001-73968278(-)$1	1	20	25	14.9999
)..((	chr1:109241858-109242095(+)$1	1	89	94	14.9999
...((	chrX:135593971-135594255(+)$1	1	0	5	14.9999
)))))	chr20:39721066-39721310(+)$1	1	49	54	14.9999
.....	chr10:105762566-105762846(+)$1	1	56	61	14.9999
.((((	chr3:37367821-37368080(+)$1	1	11	16	14.9999
.....	chr10:71151931-71152164(+)$1	1	209	214	14.9999
)))..	chr1:94341960-94342217(-)$1	1	101	106	14.9999
)).).	chr21:47612911-47613147(-)$1	1	65	70	14.9999
.....	chr18:55282771-55283003(-)$1	1	44	49	14.9999
.....	chr1:235377157-235377416(-)$1	1	91	96	14.9999
...(.	chr6:26156969-26157220(+)$1	1	53	58	14.9999
..(((	chr9:131456178-131456383(+)$1	1	14	19	14.9999
)....	chr18:55282803-55283034(-)$1	1	75	80	14.9999
)))).	chr21:40883510-40883764(+)$1	1	99	104	14.9999
.....	chr14:102551056-102551272(-)$1	1	0	5	14.9999
(..((	chr20:30381596-30381832(+)$1	1	54	59	14.9999
.((((	chr15:69072648-69072861(-)$1	1	55	60	14.9999
.....	chr4:174253129-174253345(-)$1	1	30	35	14.9999
.(((.	chr9:100774648-100774854(+)$1	1	54	59	14.9999
(..((	chr1:94341723-94341971(-)$1	1	2	7	14.9999
.....	chr6:26056058-26056306(-)$1	1	90	95	14.9999
(((((	chr2:170667341-170667650(+)$1	1	160	165	14.9999
(((((	chr7:43540205-43540415(+)$1	1	5	10	14.9999
)..))	chrX:53610707-53610947(-)$1	1	163	168	14.9999
.....	chr9:131456183-131456389(+)$1	1	9	14	14.9999
((...	chr9:80646048-80646334(-)$1	1	178	183	14.9999
)))))	chr22:24313477-24313756(-)$1	1	176	181	14.9999
..((.	chr12:6879222-6879438(+)$1	1	13	18	14.9999
.....	chr9:131456164-131456378(+)$1	1	28	33	14.9999
((...	chr3:25654063-25654295(-)$1	1	178	183	14.9999
.....	chr5:149777853-149778097(+)$1	1	91	96	14.9999
(..((	chr17:38244367-38244603(+)$1	1	136	141	14.9999
)))))	chr9:131456127-131456364(+)$1	1	65	70	14.9999
.....	chr13:31035425-31035661(-)$1	1	75	80	14.9999
.....	chr1:90493079-90493349(+)$1	1	121	126	14.9999
(....	chr14:102551017-102551221(-)$1	1	18	23	14.9999
...(.	chr4:140291409-140291651(+)$1	1	0	5	14.9999
((((.	chr11:129991588-129991806(+)$1	1	58	63	14.9999
)))))	chr12:6692363-6692597(-)$1	1	56	61	14.9999
)....	chr18:55282834-55283054(-)$1	1	95	100	14.9999
.(((.	chr9:100774629-100774848(+)$1	1	73	78	14.9999
))...	chr9:100777547-100777800(+)$1	1	103	108	14.9999
.....	chr5:71491259-71491569(+)$1	1	68	73	14.9999
.....	chr15:25615889-25616130(-)$1	1	43	48	14.9999
.....	chr9:134353799-134354063(+)$1	1	174	179	14.9999
(((((	chr9:37126797-37127039(+)$1	1	12	17	14.9999
(((((	chr1:67425296-67425527(+)$1	1	76	81	14.9999
.....	chr9:131456194-131456419(+)$1	1	13	18	14.9999
)))))	chr1:150195410-150195661(-)$1	1	98	103	14.9999
).)))	chr12:76449816-76450021(-)$1	1	107	112	14.9999
.....	chr9:100773523-100773771(+)$1	1	34	39	14.9999
....(	chr19:10488978-10489217(-)$1	1	54	59	14.9999
.....	chr5:145883286-145883535(+)$1	1	241	246	14.9999
..)))	chr10:32319943-32320241(-)$1	1	115	120	14.9999
).)))	chr12:76449778-76450000(-)$1	1	86	91	14.9999
)).).	chr21:47612962-47613173(-)$1	1	91	96	14.9999

#PSSM
G : 0.68	g : 0.31	
A : 0.68	a : 0.31	
A : 0.68	a : 0.31	
G : 0.68	g : 0.31	
A : 0.68	a : 0.31	

#score	1034.9999999999998
#seq	69
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_CDS_m2_run1.nuc.txt

#NT
ACAG	chr6:150117464-150117726(+)$1	262	52	56	11.9999
ACAG	chr5:131534472-131534726(-)$1	254	51	55	11.9999
ACAG	chr14:68157764-68158041(-)$1	277	142	146	11.9999
acag	chr19:38871526-38871740(+)$1	214	168	172	11.9999
ACAG	chr5:151178688-151178948(+)$1	260	5	9	11.9999
ACAG	chr17:79813228-79813477(-)$1	249	206	210	11.9999
acag	chr19:47285666-47285905(-)$1	239	31	35	11.9999
ACAG	chr12:8082335-8082567(-)$1	232	35	39	11.9999
ACAG	chr15:42528417-42528650(-)$1	233	187	191	11.9999
ACAG	chr6:7310138-7310363(-)$1	225	127	131	11.9999
ACAG	chr12:58089694-58089921(+)$1	227	21	25	11.9999
ACAG	chr20:23615830-23616088(-)$1	258	10	14	11.9999
ACAG	chr1:20981850-20982062(-)$1	212	153	157	11.9999
ACAG	chr11:118925875-118926127(-)$1	252	198	202	11.9999
ACAG	chr5:151045828-151046087(-)$1	259	190	194	11.9999
ACAG	chr11:14482643-14482932(-)$1	289	82	86	11.9999
ACAG	chr8:124034823-124035121(-)$1	298	154	158	11.9999
ACAG	chr13:100172195-100172461(+)$1	266	223	227	11.9999
ACAG	chr7:65439542-65439792(-)$1	250	64	68	11.9999
ACAG	chr17:6916895-6917159(+)$1	264	63	67	11.9999
ACAG	chr1:113460313-113460531(-)$1	218	194	198	11.9999
ACAG	chr8:71495813-71496109(-)$1	296	257	261	11.9999
ACAG	chr10:102116192-102116401(+)$1	209	8	12	11.9999
ACAG	chr6:109689998-109690258(-)$1	260	34	38	11.9999
ACAG	chr12:49666562-49666807(+)$1	245	210	214	11.9999
ACAG	chr19:14675913-14676127(+)$1	214	47	51	11.9999
ACAG	chr12:110777009-110777277(+)$1	268	84	88	11.9999
ACAG	chr19:18287847-18288097(+)$1	250	17	21	11.9999
ACAG	chr6:44200447-44200701(+)$1	254	92	96	11.9999
ACAG	chr11:6638502-6638759(-)$1	257	15	19	11.9999
ACAG	chr12:125270866-125271104(-)$1	238	233	237	11.9999
ACAG	chr11:59834400-59834684(+)$1	284	25	29	11.9999
ACAG	chr5:138994430-138994652(+)$1	222	52	56	11.9999
ACAG	chr3:69153513-69153767(+)$1	254	216	220	11.9999
ACAG	chr8:125498974-125499248(+)$1	274	26	30	11.9999
ACAG	chr19:13049893-13050097(+)$1	204	16	20	11.9999
ACAG	chr2:9728193-9728427(-)$1	234	169	173	11.9999
ACAG	chr8:42256207-42256482(+)$1	275	55	59	11.9999
ACAG	chr3:195794376-195794628(-)$1	252	44	48	11.9999
ACAG	chr3:41275536-41275883(+)$1	347	236	240	11.9999
ACAG	chr3:119150849-119151155(-)$1	306	90	94	11.9999
ACAG	chr1:40558000-40558209(-)$1	209	33	37	11.9999
ACAG	chr4:103225384-103225751(-)$1	367	224	228	11.9999
ACAG	chrX:153061816-153062088(+)$1	272	180	184	11.9999
ACAG	chr19:11226677-11226917(+)$1	240	66	70	11.9999
ACAG	chr22:42206110-42206364(+)$1	254	118	122	11.9999
ACAG	chr6:150111011-150111274(+)$1	263	213	217	11.9999
ACAG	chr6:7298054-7298334(-)$1	280	71	75	11.9999
ACAG	chr1:173450468-173450721(+)$1	253	45	49	11.9999
ACAG	chr6:167343062-167343365(-)$1	303	97	101	11.9999
ACAG	chr4:88293819-88294067(-)$1	248	63	67	11.9999
ACAG	chr17:42428839-42429096(+)$1	257	21	25	11.9999
ACAG	chr5:74641302-74641575(+)$1	273	0	4	11.9999
ACAG	chr1:207504470-207504742(+)$1	272	55	59	11.9999
ACAG	chr12:46756746-46756972(-)$1	226	8	12	11.9999
ACAG	chr19:11224109-11224410(+)$1	301	112	116	11.9999
ACAG	chr19:11553217-11553430(+)$1	213	0	4	11.9999
ACAG	chr11:63520009-63520217(+)$1	208	46	50	11.9999
ACAG	chr1:87368863-87369128(-)$1	265	89	93	11.9999
acag	chr11:88042285-88042587(-)$1	302	20	24	11.9999
acag	chr12:58109442-58109661(+)$1	219	5	9	11.9999
ACAG	chrX:77380803-77381022(+)$1	219	16	20	11.9999
ACAG	chr7:6502665-6502907(-)$1	242	179	183	11.9999
ACAG	chr19:42461068-42461324(-)$1	256	25	29	11.9999
ACAG	chr17:42089413-42089653(-)$1	240	0	4	11.9999
ACAG	chr2:188349436-188349674(-)$1	238	45	49	11.9999
ACAG	chrX:119589226-119589481(-)$1	255	207	211	11.9999
ACAG	chr2:55209549-55209779(-)$1	230	40	44	11.9999
ACAG	chr5:138282878-138283203(-)$1	325	136	140	11.9999
ACAG	chr1:22192133-22192358(-)$1	225	98	102	11.9999
ACAG	chr19:38798147-38798427(-)$1	280	243	247	11.9999
ACAG	chr12:110777207-110777422(+)$1	215	122	126	11.9999
ACAG	chr7:100856042-100856307(-)$1	265	79	83	11.9999

#otherMatches

#Struct PSSM
eeee	chr15:44062382-44062627(+)$1	245	61	65	11.9999
eeee	chr6:150117464-150117726(+)$1	262	52	56	11.9999
:::d	chr5:131534472-131534726(-)$1	254	51	55	11.9999
[bbn	chr14:68157764-68158041(-)$1	277	142	146	11.9999
ffqq	chr19:38871526-38871740(+)$1	214	168	172	11.9999
eecc	chr5:151178688-151178948(+)$1	260	5	9	11.9999
:ddd	chr17:79813228-79813477(-)$1	249	206	210	11.9999
:GGG	chr19:47285666-47285905(-)$1	239	31	35	11.9999
rfff	chr12:8082335-8082567(-)$1	232	35	39	11.9999
:ccc	chr15:42528417-42528650(-)$1	233	187	191	11.9999
5555	chr6:7310138-7310363(-)$1	225	127	131	11.9999
ffff	chr12:58089694-58089921(+)$1	227	21	25	11.9999
DDD{	chr20:23615830-23616088(-)$1	258	10	14	11.9999
C:::	chr1:20981850-20982062(-)$1	212	153	157	11.9999
eeee	chr11:118925875-118926127(-)$1	252	198	202	11.9999
pppp	chr5:151045828-151046087(-)$1	259	190	194	11.9999
2ddd	chr11:14482643-14482932(-)$1	289	82	86	11.9999
g!!b	chr8:124034823-124035121(-)$1	298	154	158	11.9999
:::f	chr13:100172195-100172461(+)$1	266	223	227	11.9999
!ccc	chr7:65439542-65439792(-)$1	250	64	68	11.9999
333b	chr17:6916895-6917159(+)$1	264	63	67	11.9999
]hhh	chr1:113460313-113460531(-)$1	218	194	198	11.9999
gggg	chr8:71495813-71496109(-)$1	296	257	261	11.9999
EEEE	chr10:102116192-102116401(+)$1	209	8	12	11.9999
c]cc	chr6:109689998-109690258(-)$1	260	34	38	11.9999
dddd	chr12:49666562-49666807(+)$1	245	210	214	11.9999
{DDD	chr19:14675913-14676127(+)$1	214	47	51	11.9999
oooo	chr12:110777009-110777277(+)$1	268	84	88	11.9999
:::c	chr19:18287847-18288097(+)$1	250	17	21	11.9999
gggg	chr6:44200447-44200701(+)$1	254	92	96	11.9999
::EE	chr11:6638502-6638759(-)$1	257	15	19	11.9999
DDDD	chr12:125270866-125271104(-)$1	238	233	237	11.9999
CCCK	chr11:59834400-59834684(+)$1	284	25	29	11.9999
::BB	chr5:138994430-138994652(+)$1	222	52	56	11.9999
:FFF	chr3:69153513-69153767(+)$1	254	216	220	11.9999
]ccc	chr8:125498974-125499248(+)$1	274	26	30	11.9999
EEKK	chr19:13049893-13050097(+)$1	204	16	20	11.9999
cc[a	chr2:9728193-9728427(-)$1	234	169	173	11.9999
lccc	chr8:42256207-42256482(+)$1	275	55	59	11.9999
BB{D	chr3:195794376-195794628(-)$1	252	44	48	11.9999
H::c	chr3:41275536-41275883(+)$1	347	236	240	11.9999
e!!a	chr3:119150849-119151155(-)$1	306	90	94	11.9999
:::b	chr1:40558000-40558209(-)$1	209	33	37	11.9999
ggg:	chr4:103225384-103225751(-)$1	367	224	228	11.9999
d]dd	chrX:153061816-153062088(+)$1	272	180	184	11.9999
4ddd	chr19:11226677-11226917(+)$1	240	66	70	11.9999
]iii	chr22:42206110-42206364(+)$1	254	118	122	11.9999
pddd	chr6:150111011-150111274(+)$1	263	213	217	11.9999
FFFF	chr6:7298054-7298334(-)$1	280	71	75	11.9999
::::	chr1:173450468-173450721(+)$1	253	45	49	11.9999
:::c	chr6:167343062-167343365(-)$1	303	97	101	11.9999
e"""	chr4:88293819-88294067(-)$1	248	63	67	11.9999
LLCC	chr17:42428839-42429096(+)$1	257	21	25	11.9999
::::	chr5:74641302-74641575(+)$1	273	0	4	11.9999
BKKI	chr1:207504470-207504742(+)$1	272	55	59	11.9999
"""e	chr12:46756746-46756972(-)$1	226	8	12	11.9999
EEEE	chr19:11224109-11224410(+)$1	301	112	116	11.9999
::ee	chr19:11553217-11553430(+)$1	213	0	4	11.9999
tbb]	chr11:63520009-63520217(+)$1	208	46	50	11.9999
CCCN	chr1:87368863-87369128(-)$1	265	89	93	11.9999
::EE	chr11:88042285-88042587(-)$1	302	20	24	11.9999
ffff	chr12:58109442-58109661(+)$1	219	5	9	11.9999
DDDD	chrX:77380803-77381022(+)$1	219	16	20	11.9999
c:DD	chr7:6502665-6502907(-)$1	242	179	183	11.9999
oooa	chr19:42461068-42461324(-)$1	256	25	29	11.9999
gggg	chr17:42089413-42089653(-)$1	240	0	4	11.9999
JJ::	chr2:188349436-188349674(-)$1	238	45	49	11.9999
!ccc	chrX:119589226-119589481(-)$1	255	207	211	11.9999
!ccc	chr2:55209549-55209779(-)$1	230	40	44	11.9999
eeee	chr5:138282878-138283203(-)$1	325	136	140	11.9999
{EEE	chr1:22192133-22192358(-)$1	225	98	102	11.9999
dddd	chr19:38798147-38798427(-)$1	280	243	247	11.9999
2ddd	chr12:110777207-110777422(+)$1	215	122	126	11.9999
::==	chr7:100856042-100856307(-)$1	265	79	83	11.9999

#DB
))))	chr15:44062382-44062627(+)$1	1	61	65	11.9999
))))	chr6:150117464-150117726(+)$1	1	52	56	11.9999
...(	chr5:131534472-131534726(-)$1	1	51	55	11.9999
.((.	chr14:68157764-68158041(-)$1	1	142	146	11.9999
((..	chr19:38871526-38871740(+)$1	1	168	172	11.9999
((((	chr5:151178688-151178948(+)$1	1	5	9	11.9999
.(((	chr17:79813228-79813477(-)$1	1	206	210	11.9999
.(((	chr19:47285666-47285905(-)$1	1	31	35	11.9999
.)))	chr12:8082335-8082567(-)$1	1	35	39	11.9999
.(((	chr15:42528417-42528650(-)$1	1	187	191	11.9999
....	chr6:7310138-7310363(-)$1	1	127	131	11.9999
((((	chr12:58089694-58089921(+)$1	1	21	25	11.9999
(((.	chr20:23615830-23616088(-)$1	1	10	14	11.9999
)...	chr1:20981850-20982062(-)$1	1	153	157	11.9999
((((	chr11:118925875-118926127(-)$1	1	198	202	11.9999
....	chr5:151045828-151046087(-)$1	1	190	194	11.9999
.)))	chr11:14482643-14482932(-)$1	1	82	86	11.9999
(..(	chr8:124034823-124035121(-)$1	1	154	158	11.9999
...(	chr13:100172195-100172461(+)$1	1	223	227	11.9999
.(((	chr7:65439542-65439792(-)$1	1	64	68	11.9999
...)	chr17:6916895-6917159(+)$1	1	63	67	11.9999
.)))	chr1:113460313-113460531(-)$1	1	194	198	11.9999
))))	chr8:71495813-71496109(-)$1	1	257	261	11.9999
((((	chr10:102116192-102116401(+)$1	1	8	12	11.9999
).))	chr6:109689998-109690258(-)$1	1	34	38	11.9999
((((	chr12:49666562-49666807(+)$1	1	210	214	11.9999
.(((	chr19:14675913-14676127(+)$1	1	47	51	11.9999
....	chr12:110777009-110777277(+)$1	1	84	88	11.9999
...(	chr19:18287847-18288097(+)$1	1	17	21	11.9999
))))	chr6:44200447-44200701(+)$1	1	92	96	11.9999
..((	chr11:6638502-6638759(-)$1	1	15	19	11.9999
))))	chr12:125270866-125271104(-)$1	1	233	237	11.9999
(((.	chr11:59834400-59834684(+)$1	1	25	29	11.9999
..((	chr5:138994430-138994652(+)$1	1	52	56	11.9999
.)))	chr3:69153513-69153767(+)$1	1	216	220	11.9999
.)))	chr8:125498974-125499248(+)$1	1	26	30	11.9999
((..	chr19:13049893-13050097(+)$1	1	16	20	11.9999
((.(	chr2:9728193-9728427(-)$1	1	169	173	11.9999
.)))	chr8:42256207-42256482(+)$1	1	55	59	11.9999
((.(	chr3:195794376-195794628(-)$1	1	44	48	11.9999
)..(	chr3:41275536-41275883(+)$1	1	236	240	11.9999
(..(	chr3:119150849-119151155(-)$1	1	90	94	11.9999
...(	chr1:40558000-40558209(-)$1	1	33	37	11.9999
))).	chr4:103225384-103225751(-)$1	1	224	228	11.9999
).))	chrX:153061816-153062088(+)$1	1	180	184	11.9999
.)))	chr19:11226677-11226917(+)$1	1	66	70	11.9999
.)))	chr22:42206110-42206364(+)$1	1	118	122	11.9999
.)))	chr6:150111011-150111274(+)$1	1	213	217	11.9999
((((	chr6:7298054-7298334(-)$1	1	71	75	11.9999
....	chr1:173450468-173450721(+)$1	1	45	49	11.9999
...(	chr6:167343062-167343365(-)$1	1	97	101	11.9999
(...	chr4:88293819-88294067(-)$1	1	63	67	11.9999
..((	chr17:42428839-42429096(+)$1	1	21	25	11.9999
....	chr5:74641302-74641575(+)$1	1	0	4	11.9999
(..(	chr1:207504470-207504742(+)$1	1	55	59	11.9999
...(	chr12:46756746-46756972(-)$1	1	8	12	11.9999
((((	chr19:11224109-11224410(+)$1	1	112	116	11.9999
..((	chr19:11553217-11553430(+)$1	1	0	4	11.9999
.)).	chr11:63520009-63520217(+)$1	1	46	50	11.9999
(((.	chr1:87368863-87369128(-)$1	1	89	93	11.9999
..((	chr11:88042285-88042587(-)$1	1	20	24	11.9999
((((	chr12:58109442-58109661(+)$1	1	5	9	11.9999
((((	chrX:77380803-77381022(+)$1	1	16	20	11.9999
).))	chr7:6502665-6502907(-)$1	1	179	183	11.9999
...)	chr19:42461068-42461324(-)$1	1	25	29	11.9999
((((	chr17:42089413-42089653(-)$1	1	0	4	11.9999
((..	chr2:188349436-188349674(-)$1	1	45	49	11.9999
.(((	chrX:119589226-119589481(-)$1	1	207	211	11.9999
.(((	chr2:55209549-55209779(-)$1	1	40	44	11.9999
))))	chr5:138282878-138283203(-)$1	1	136	140	11.9999
.(((	chr1:22192133-22192358(-)$1	1	98	102	11.9999
))))	chr19:38798147-38798427(-)$1	1	243	247	11.9999
.)))	chr12:110777207-110777422(+)$1	1	122	126	11.9999
..((	chr7:100856042-100856307(-)$1	1	79	83	11.9999

#PSSM
A : 0.94	a : 0.05	
C : 0.94	c : 0.05	
A : 0.94	a : 0.05	
G : 0.94	g : 0.05	

#score	887.9999999999995
#seq	74
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_UTR_m2_run1.nuc.txt

#NT
CGGGCCGGG	chr8:144671251-144671480(-)$1	229	90	99	17.8000
ggggccgga	chr11:849872-850131(+)$1	259	65	74	16.8000
GGAGCUGGG	chr7:1132623-1132884(-)$1	261	112	121	15.7000
GGAGCUGGG	chr2:202002059-202002356(+)$1	297	63	72	15.7000
GCGGCCGGG	chr16:75285405-75285652(-)$1	247	67	76	17.8000
GUGGCUGGG	chr17:80197768-80198012(+)$1	244	48	57	15.8000
CGGGCUGGG	chr16:75297869-75298110(-)$1	241	80	89	16.0000
GGGCCCGGG	chr22:31741781-31742046(-)$1	265	1	10	16.9000
guggcuggg	chr22:45724716-45724979(+)$1	263	133	142	15.8000
GGGGCCGGG	chr19:59074102-59074382(+)$1	280	89	98	21.5000
ggugcuggg	chr7:1177631-1177906(-)$1	275	233	242	15.6000
GGGGCCGGG	chr9:134350650-134350917(+)$1	267	59	68	21.5000
GGGGCCUGG	chr17:79860493-79860770(-)$1	277	77	86	17.2000
GGGGCUGGG	chr2:202001724-202002101(+)$1	377	147	156	19.7000
CGGGCCGGG	chr8:144671306-144671634(-)$1	328	244	253	17.8000
gggggcggg	chr12:104697462-104697747(+)$1	285	18	27	16.9000
GCGGCCGGG	chr19:1205685-1205975(+)$1	290	47	56	17.8000
gcggccggg	chr10:77158319-77158575(-)$1	256	71	80	17.8000
GGGGCCCGG	chr6:1314084-1314323(+)$1	239	77	86	17.1000
ggggccgcg	chr14:105715317-105715582(-)$1	265	137	146	17.0000
GGGGCAGGG	chr2:227664110-227664404(-)$1	294	156	165	18.7000
GGGGCCGGU	chr16:8942446-8942728(+)$1	282	31	40	16.8000
GGGGCAGGG	chr8:144343387-144343663(+)$1	276	186	195	18.7000
GGGGCCUGG	chr14:105707731-105707991(-)$1	260	123	132	17.2000
gcggccggg	chr9:127020433-127020709(+)$1	276	106	115	17.8000
GGGGCCAGG	chr1:27022509-27022754(+)$1	245	33	42	17.2000
GGCGCCGGG	chr17:43225927-43226209(+)$1	282	159	168	17.4000
AGGGCUGGG	chr16:87736814-87737083(-)$1	269	92	101	15.5000
CGGGCCGGG	chr2:200323325-200323593(-)$1	268	15	24	17.8000
GGAGCUGGG	chr20:43059302-43059527(+)$1	225	44	53	15.7000
ggggcgggG	chr19:56166196-56166485(+)$1	289	114	123	18.7000
GGGCCCGGG	chr17:80192375-80192680(+)$1	305	158	167	16.9000
GGGGCCGGG	chr8:144679309-144679557(-)$1	248	92	101	21.5000
GGGGCCGGG	chr13:45150564-45150891(-)$1	327	128	137	21.5000
gggggcggg	chr3:128211691-128211981(+)$1	290	0	9	16.9000
GGUGCCGGG	chr9:139715774-139716050(+)$1	276	83	92	17.4000
GGGGCAGGG	chr1:182359846-182360105(-)$1	259	32	41	18.7000
CGGGCUggg	chr14:105715428-105715730(-)$1	302	254	263	16.0000
ggggccgug	chr16:89902651-89902926(+)$1	275	96	105	16.9000
GGGGCUGGG	chr2:202001629-202001900(+)$1	271	242	251	19.7000
GGGGCGGGG	chr19:1206004-1206293(+)$1	289	91	100	18.7000
GCGGCCGGG	chr17:74380190-74380435(+)$1	245	222	231	17.8000
ggcgcuggg	chr3:195622690-195622959(-)$1	269	140	149	15.6000
Cgggccggg	chr1:1284447-1284710(-)$1	263	30	39	17.8000
GGGGCCGGG	chr19:42758633-42758902(-)$1	269	102	111	21.5000
GUGGCUGGG	chr7:150026850-150027102(+)$1	252	189	198	15.8000
ggggccgcg	chr14:105715205-105715474(-)$1	269	29	38	17.0000
GGGGCCAGG	chr17:66538068-66538348(+)$1	280	114	123	17.2000
GGGGCCGGG	chr11:65381128-65381399(-)$1	271	4	13	21.5000

#otherMatches

#Struct PSSM
gggGGGGGG	chr1:27022733-27023026(+)$1	293	90	99	18.7000
"dddd[ddd	chr8:144671251-144671480(-)$1	229	90	99	17.8000
GGGGGGGKK	chr11:849872-850131(+)$1	259	65	74	16.8000
II}BBGGGG	chr7:1132623-1132884(-)$1	261	112	121	15.7000
dddFFFFFF	chr2:202002059-202002356(+)$1	297	63	72	15.7000
ffffff[cc	chr16:75285405-75285652(-)$1	247	67	76	17.8000
[gggggggm	chr17:80197768-80198012(+)$1	244	48	57	15.8000
:ccc!!hhh	chr16:75297869-75298110(-)$1	241	80	89	16.0000
b[cccccco	chr22:31741781-31742046(-)$1	265	1	10	16.9000
::BB{IIII	chr22:45724716-45724979(+)$1	263	133	142	15.8000
cccdddd]c	chr19:59074102-59074382(+)$1	280	89	98	21.5000
]hhhhhhhh	chr7:1177631-1177906(-)$1	275	233	242	15.6000
eeeeeFFFF	chr9:134350650-134350917(+)$1	267	59	68	21.5000
"iiiiiiii	chr17:79860493-79860770(-)$1	277	77	86	17.2000
HFFFFFFMM	chr2:202001724-202002101(+)$1	377	147	156	19.7000
ddd:::FFF	chr8:144671306-144671634(-)$1	328	244	253	17.8000
ii[ccc[dd	chr12:104697462-104697747(+)$1	285	18	27	16.9000
ggg[bb!!b	chr19:1205685-1205975(+)$1	290	47	56	17.8000
ffffCCCHH	chr10:77158319-77158575(-)$1	256	71	80	17.8000
d!!bb[ccc	chr6:1314084-1314323(+)$1	239	77	86	17.1000
iiii$$$$$	chr14:105715317-105715582(-)$1	265	137	146	17.0000
ffff22hhh	chr2:227664110-227664404(-)$1	294	156	165	18.7000
eee[bbccc	chr16:8942446-8942728(+)$1	282	31	40	16.8000
eeeee22cc	chr8:144343387-144343663(+)$1	276	186	195	18.7000
!eeeeemmm	chr14:105707731-105707991(-)$1	260	123	132	17.2000
ggggggg]b	chr9:127020433-127020709(+)$1	276	106	115	17.8000
DDDDDDDDD	chr1:27022509-27022754(+)$1	245	33	42	17.2000
mma]bb333	chr17:43225927-43226209(+)$1	282	159	168	17.4000
3ddddGGGG	chr16:87736814-87737083(-)$1	269	92	101	15.5000
hhhhhhhhn	chr2:200323325-200323593(-)$1	268	15	24	17.8000
""a[dddd[	chr20:43059302-43059527(+)$1	225	44	53	15.7000
gggggg555	chr19:56166196-56166485(+)$1	289	114	123	18.7000
ggggg[ddd	chr17:80192375-80192680(+)$1	305	158	167	16.9000
4444bb555	chr8:144679309-144679557(-)$1	248	92	101	21.5000
iiiiiiiii	chr13:45150564-45150891(-)$1	327	128	137	21.5000
ggggggg%%	chr3:128211691-128211981(+)$1	290	0	9	16.9000
====bb"""	chr9:139715774-139716050(+)$1	276	83	92	17.4000
e333fffff	chr1:182359846-182360105(-)$1	259	32	41	18.7000
cc::CCCYY	chr14:105715428-105715730(-)$1	302	254	263	16.0000
HHHHHHHHL	chr16:89902651-89902926(+)$1	275	96	105	16.9000
~~~~GGGGG	chr2:202001629-202001900(+)$1	271	242	251	19.7000
dd]hhhhhh	chr19:1206004-1206293(+)$1	289	91	100	18.7000
BBDDDDYYH	chr17:74380190-74380435(+)$1	245	222	231	17.8000
ccc[ccc[a	chr3:195622690-195622959(-)$1	269	140	149	15.6000
ccc[ccc[b	chr1:1284447-1284710(-)$1	263	30	39	17.8000
JJJJJJJLL	chr19:42758633-42758902(-)$1	269	102	111	21.5000
a[eeeeenn	chr7:150026850-150027102(+)$1	252	189	198	15.8000
ellleeeee	chr14:105715205-105715474(-)$1	269	29	38	17.0000
2cccbb]a]	chr17:66538068-66538348(+)$1	280	114	123	17.2000
=========	chr11:65381128-65381399(-)$1	271	4	13	21.5000

#DB
)))))))))	chr1:27022733-27023026(+)$1	1	90	99	18.7000
.((((.(((	chr8:144671251-144671480(-)$1	1	90	99	17.8000
(((((((..	chr11:849872-850131(+)$1	1	65	74	16.8000
)).))))))	chr7:1132623-1132884(-)$1	1	112	121	15.7000
)))))))))	chr2:202002059-202002356(+)$1	1	63	72	15.7000
((((((.((	chr16:75285405-75285652(-)$1	1	67	76	17.8000
.(((((((.	chr17:80197768-80198012(+)$1	1	48	57	15.8000
.(((..(((	chr16:75297869-75298110(-)$1	1	80	89	16.0000
(.((((((.	chr22:31741781-31742046(-)$1	1	1	10	16.9000
..((.((((	chr22:45724716-45724979(+)$1	1	133	142	15.8000
))))))).)	chr19:59074102-59074382(+)$1	1	89	98	21.5000
.))))))))	chr7:1177631-1177906(-)$1	1	233	242	15.6000
)))))((((	chr9:134350650-134350917(+)$1	1	59	68	21.5000
.((((((((	chr17:79860493-79860770(-)$1	1	77	86	17.2000
(((((((..	chr2:202001724-202002101(+)$1	1	147	156	19.7000
)))...)))	chr8:144671306-144671634(-)$1	1	244	253	17.8000
((.(((.((	chr12:104697462-104697747(+)$1	1	18	27	16.9000
(((.((..(	chr19:1205685-1205975(+)$1	1	47	56	17.8000
)))))))))	chr10:77158319-77158575(-)$1	1	71	80	17.8000
(..((.(((	chr6:1314084-1314323(+)$1	1	77	86	17.1000
((((.....	chr14:105715317-105715582(-)$1	1	137	146	17.0000
))))..)))	chr2:227664110-227664404(-)$1	1	156	165	18.7000
(((.(((((	chr16:8942446-8942728(+)$1	1	31	40	16.8000
)))))..))	chr8:144343387-144343663(+)$1	1	186	195	18.7000
.(((((...	chr14:105707731-105707991(-)$1	1	123	132	17.2000
))))))).)	chr9:127020433-127020709(+)$1	1	106	115	17.8000
(((((((((	chr1:27022509-27022754(+)$1	1	33	42	17.2000
..).))...	chr17:43225927-43226209(+)$1	1	159	168	17.4000
.))))))))	chr16:87736814-87737083(-)$1	1	92	101	15.5000
((((((((.	chr2:200323325-200323593(-)$1	1	15	24	17.8000
..(.((((.	chr20:43059302-43059527(+)$1	1	44	53	15.7000
))))))...	chr19:56166196-56166485(+)$1	1	114	123	18.7000
(((((.(((	chr17:80192375-80192680(+)$1	1	158	167	16.9000
....))...	chr8:144679309-144679557(-)$1	1	92	101	21.5000
)))))))))	chr13:45150564-45150891(-)$1	1	128	137	21.5000
(((((((..	chr3:128211691-128211981(+)$1	1	0	9	16.9000
((((((...	chr9:139715774-139716050(+)$1	1	83	92	17.4000
)...)))))	chr1:182359846-182360105(-)$1	1	32	41	18.7000
))..)))..	chr14:105715428-105715730(-)$1	1	254	263	16.0000
((((((((.	chr16:89902651-89902926(+)$1	1	96	105	16.9000
....)))))	chr2:202001629-202001900(+)$1	1	242	251	19.7000
)).))))))	chr19:1206004-1206293(+)$1	1	91	100	18.7000
))))))..)	chr17:74380190-74380435(+)$1	1	222	231	17.8000
(((.(((.(	chr3:195622690-195622959(-)$1	1	140	149	15.6000
(((.(((.(	chr1:1284447-1284710(-)$1	1	30	39	17.8000
(((((((..	chr19:42758633-42758902(-)$1	1	102	111	21.5000
(.(((((..	chr7:150026850-150027102(+)$1	1	189	198	15.8000
(...)))))	chr14:105715205-105715474(-)$1	1	29	38	17.0000
.))))).).	chr17:66538068-66538348(+)$1	1	114	123	17.2000
(((((((((	chr11:65381128-65381399(-)$1	1	4	13	21.5000

#PSSM
G : 0.60	g : 0.25	C : 0.12	A : 0.02	
G : 0.62	g : 0.21	C : 0.06	U : 0.04	c : 0.04	u : 0.02	
G : 0.62	g : 0.23	A : 0.06	u : 0.02	C : 0.02	U : 0.02	c : 0.02	
G : 0.68	g : 0.27	C : 0.04	
C : 0.72	c : 0.23	g : 0.04	
C : 0.44	U : 0.19	c : 0.18	u : 0.06	A : 0.06	g : 0.04	G : 0.02	
G : 0.60	g : 0.30	U : 0.04	A : 0.04	C : 0.02	
G : 0.70	g : 0.23	c : 0.04	u : 0.02	
G : 0.70	g : 0.25	a : 0.02	U : 0.02	

#score	886.8000000000004
#seq	50
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_CDS_m3_run1.nuc.txt

#NT
CCAGGU	chr16:31202188-31202532(+)$1	344	239	245	15.2500
CCAGGU	chr15:66180065-66180333(+)$1	268	156	162	15.2500
CCAGGU	chr1:113244005-113244264(-)$1	259	57	63	15.2500
CCAGGU	chr13:27830353-27830571(+)$1	218	114	120	15.2500
CCAGGU	chr11:64084428-64084670(-)$1	242	62	68	15.2500
CCAGGA	chr11:46404037-46404306(+)$1	269	202	208	14.2500
CCAGGU	chr1:33820700-33821030(+)$1	330	169	175	15.2500
CCAGGU	chr2:130948086-130948333(+)$1	247	206	212	15.2500
CCAGGU	chr17:79826298-79826572(-)$1	274	108	114	15.2500
CCAGGU	chr5:133709973-133710222(+)$1	249	96	102	15.2500
CCAGGA	chr11:65357554-65357782(+)$1	228	11	17	14.2500
CCAGGG	chrX:153578117-153578336(-)$1	219	97	103	14.1250
CCAGGG	chr7:93628456-93628707(-)$1	251	14	20	14.1250
CCAGGA	chr6:31591408-31591657(+)$1	249	32	38	14.2500
CCAGGU	chr1:2125335-2125601(-)$1	266	256	262	15.2500
CCAGGA	chr6:41903504-41903757(-)$1	253	147	153	14.2500
CCAGGU	chr19:49377108-49377368(+)$1	260	151	157	15.2500
CCAGGC	chr2:97541857-97542138(-)$1	281	57	63	13.3750
CCAGGU	chr11:65350511-65350806(+)$1	295	19	25	15.2500
ccagga	chr1:197115423-197115672(-)$1	249	82	88	14.2500
CCAGGA	chr19:932388-932653(+)$1	265	25	31	14.2500
CCAGGA	chr17:80445927-80446192(+)$1	265	0	6	14.2500
CCAGGG	chr5:177577788-177578066(-)$1	278	2	8	14.1250
CCAGGA	chr3:48481867-48482079(+)$1	212	79	85	14.2500
CCAGGU	chr1:156109458-156109700(+)$1	242	62	68	15.2500
CCAGGU	chr5:72800093-72800329(+)$1	236	131	137	15.2500
CCAGGG	chr19:36145436-36145672(+)$1	236	151	157	14.1250
CCAGGA	chr12:22215215-22215469(+)$1	254	188	194	14.2500
CCAGGU	chr8:145107126-145107378(-)$1	252	23	29	15.2500
CCAGGG	chr19:55912779-55913092(-)$1	313	172	178	14.1250
CCAGGC	chr22:29196186-29196421(-)$1	235	7	13	13.3750
CCAGGU	chr3:49052873-49053146(+)$1	273	123	129	15.2500
CCAGGG	chr6:32942250-32942472(+)$1	222	43	49	14.1250
CCAGGU	chr16:18800263-18800541(-)$1	278	174	180	15.2500
CCAGGA	chr19:11242017-11242252(+)$1	235	204	210	14.2500
CCAGGG	chr11:62342905-62343219(-)$1	314	159	165	14.1250
CCAGGG	chr20:3765536-3765889(-)$1	353	189	195	14.1250
CCAGGG	chr8:124194962-124195209(+)$1	247	119	125	14.1250
CCAGGU	chr10:53457537-53457853(-)$1	316	244	250	15.2500

#otherMatches

#Struct PSSM
ee[a[d	chr16:337962-338236(-)$1	274	139	145	13.3750
!!dddd	chr16:31202188-31202532(+)$1	344	239	245	15.2500
22ccc3	chr15:66180065-66180333(+)$1	268	156	162	15.2500
dddd::	chr1:113244005-113244264(-)$1	259	57	63	15.2500
gggggg	chr13:27830353-27830571(+)$1	218	114	120	15.2500
dd####	chr11:64084428-64084670(-)$1	242	62	68	15.2500
ee:bb[	chr11:46404037-46404306(+)$1	269	202	208	14.2500
[ggggg	chr1:33820700-33821030(+)$1	330	169	175	15.2500
4444dd	chr2:130948086-130948333(+)$1	247	206	212	15.2500
eccc::	chr17:79826298-79826572(-)$1	274	108	114	15.2500
ddddbb	chr5:133709973-133710222(+)$1	249	96	102	15.2500
EEEa[e	chr11:65357554-65357782(+)$1	228	11	17	14.2500
Eeeeee	chrX:153578117-153578336(-)$1	219	97	103	14.1250
lllggg	chr7:93628456-93628707(-)$1	251	14	20	14.1250
[bb$$$	chr6:31591408-31591657(+)$1	249	32	38	14.2500
EEEEE}	chr1:2125335-2125601(-)$1	266	256	262	15.2500
GGGGG:	chr6:41903504-41903757(-)$1	253	147	153	14.2500
gggggg	chr19:49377108-49377368(+)$1	260	151	157	15.2500
BB{FFF	chr2:97541857-97542138(-)$1	281	57	63	13.3750
FFQQQQ	chr11:65350511-65350806(+)$1	295	19	25	15.2500
HFFFFF	chr1:197115423-197115672(-)$1	249	82	88	14.2500
C:::::	chr19:932388-932653(+)$1	265	25	31	14.2500
JJJJJJ	chr17:80445927-80446192(+)$1	265	0	6	14.2500
DDDD{B	chr5:177577788-177578066(-)$1	278	2	8	14.1250
ee))))	chr3:48481867-48482079(+)$1	212	79	85	14.2500
FFFFF:	chr1:156109458-156109700(+)$1	242	62	68	15.2500
eennnn	chr5:72800093-72800329(+)$1	236	131	137	15.2500
bbb22d	chr19:36145436-36145672(+)$1	236	151	157	14.1250
DDDDdd	chr12:22215215-22215469(+)$1	254	188	194	14.2500
CC:::c	chr8:145107126-145107378(-)$1	252	23	29	15.2500
ffffff	chr19:55912779-55913092(-)$1	313	172	178	14.1250
FFFF:G	chr22:29196186-29196421(-)$1	235	7	13	13.3750
555ggg	chr3:49052873-49053146(+)$1	273	123	129	15.2500
EEeeee	chr6:32942250-32942472(+)$1	222	43	49	14.1250
FFFFF}	chr16:18800263-18800541(-)$1	278	174	180	15.2500
"""ccc	chr19:11242017-11242252(+)$1	235	204	210	14.2500
eee666	chr11:62342905-62343219(-)$1	314	159	165	14.1250
cccqqq	chr20:3765536-3765889(-)$1	353	189	195	14.1250
nnnbb2	chr8:124194962-124195209(+)$1	247	119	125	14.1250
eeeee]	chr10:53457537-53457853(-)$1	316	244	250	15.2500

#DB
((.(.(	chr16:337962-338236(-)$1	1	139	145	13.3750
..((((	chr16:31202188-31202532(+)$1	1	239	245	15.2500
..))).	chr15:66180065-66180333(+)$1	1	156	162	15.2500
))))..	chr1:113244005-113244264(-)$1	1	57	63	15.2500
))))))	chr13:27830353-27830571(+)$1	1	114	120	15.2500
((....	chr11:64084428-64084670(-)$1	1	62	68	15.2500
)).((.	chr11:46404037-46404306(+)$1	1	202	208	14.2500
.(((((	chr1:33820700-33821030(+)$1	1	169	175	15.2500
....))	chr2:130948086-130948333(+)$1	1	206	212	15.2500
))))..	chr17:79826298-79826572(-)$1	1	108	114	15.2500
))))))	chr5:133709973-133710222(+)$1	1	96	102	15.2500
((((.(	chr11:65357554-65357782(+)$1	1	11	17	14.2500
((((((	chrX:153578117-153578336(-)$1	1	97	103	14.1250
...)))	chr7:93628456-93628707(-)$1	1	14	20	14.1250
.((...	chr6:31591408-31591657(+)$1	1	32	38	14.2500
))))).	chr1:2125335-2125601(-)$1	1	256	262	15.2500
))))).	chr6:41903504-41903757(-)$1	1	147	153	14.2500
))))))	chr19:49377108-49377368(+)$1	1	151	157	15.2500
((.(((	chr2:97541857-97542138(-)$1	1	57	63	13.3750
((....	chr11:65350511-65350806(+)$1	1	19	25	15.2500
((((((	chr1:197115423-197115672(-)$1	1	82	88	14.2500
(.....	chr19:932388-932653(+)$1	1	25	31	14.2500
((((((	chr17:80445927-80446192(+)$1	1	0	6	14.2500
((((.(	chr5:177577788-177578066(-)$1	1	2	8	14.1250
((....	chr3:48481867-48482079(+)$1	1	79	85	14.2500
(((((.	chr1:156109458-156109700(+)$1	1	62	68	15.2500
((....	chr5:72800093-72800329(+)$1	1	131	137	15.2500
)))..)	chr19:36145436-36145672(+)$1	1	151	157	14.1250
))))((	chr12:22215215-22215469(+)$1	1	188	194	14.2500
((...(	chr8:145107126-145107378(-)$1	1	23	29	15.2500
))))))	chr19:55912779-55913092(-)$1	1	172	178	14.1250
((((.(	chr22:29196186-29196421(-)$1	1	7	13	13.3750
...)))	chr3:49052873-49053146(+)$1	1	123	129	15.2500
((((((	chr6:32942250-32942472(+)$1	1	43	49	14.1250
))))).	chr16:18800263-18800541(-)$1	1	174	180	15.2500
...(((	chr19:11242017-11242252(+)$1	1	204	210	14.2500
)))...	chr11:62342905-62343219(-)$1	1	159	165	14.1250
(((...	chr20:3765536-3765889(-)$1	1	189	195	14.1250
...)).	chr8:124194962-124195209(+)$1	1	119	125	14.1250
))))).	chr10:53457537-53457853(-)$1	1	244	250	15.2500

#PSSM
C : 0.97	c : 0.02	
C : 0.97	c : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
U : 0.45	A : 0.22	G : 0.22	C : 0.07	a : 0.02	

#score	584.2500000000001
#seq	40
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF756RYJ_AARS_UTR_m2_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
::::::::DDDDEEEEEKKBBeeeee[dddduuuuuuuuuuuudddd]eeeee::::::dddd!!cccpppppppcccdddd:::a[ddddbbhhhhhhhh[ddddccc!!ccc!!dddd[dddddddd"""ccc####bb[a[bbnnnnnbb]a]bb]ccc22dddd]dddd]dddd22ccc]ccc]dddd]hhhhhhhh]bb333dddd]aBBEEEEE}DDDDdddddddd[bbnnnnn	chr3:128211660-128211918(+)$1	258	0	241	723.0000

#DB
........(((((((((..(((((((.((((............)))).)))))......((((..(((.......)))))))...(.((((((((((((((.(((((((..(((..((((.((((((((...(((....((.(.((.....)).).)).)))..)))).)))).))))..))).))).)))).)))))))).))...)))).)))))))).))))((((((((.((.....	chr3:128211660-128211918(+)$1	1	0	241	723.0000

#PSSM
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	

#score	723.0
#seq	1
#width	241
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_transcript_m2_run2.nuc.txt

#NT
UUGUACAAAUAAAAA	chr2:184010274-184010535(+)$1	261	15	30	15.4716
uuaaugaaaaauaau	chr1:51229694-51229957(-)$1	263	146	161	14.8113
AUAGAaaaacauaau	chr18:1348620-1348893(-)$1	273	36	51	15.0943
UUAAAGAAAUAGUGU	chr3:152041029-152041284(+)$1	255	105	120	15.1886
uuuaauaaauauauu	chr8:111986248-111986563(-)$1	315	87	102	18.1132
uuuaaaaacagaaau	chr19:1050735-1051000(+)$1	265	98	113	14.9056
AUAGAAAUAUAAAAU	chr3:152172131-152172406(+)$1	275	96	111	17.0754
UUAAAAAAAUCUCAU	chr9:123584194-123584528(-)$1	334	74	89	18.0188
UAGAACAAAUAAAAU	chr17:68063974-68064261(-)$1	287	118	133	19.4339
UUGAAAAAGGAAAAU	chr17:45699405-45699687(+)$1	282	51	66	17.4528
CUUAAAAAAUAACUU	chr8:130424952-130425200(-)$1	248	91	106	16.1320
uaauaauaauaauaa	chr6:49576331-49576577(-)$1	246	93	108	11.9811
UUAAAGAAAAAUAAU	chr9:114985260-114985487(-)$1	227	175	190	19.2452
auagaaaaauauuau	chr7:129834412-129834708(-)$1	296	30	45	15.8490
uaaaagaaauaaaaa	chr2:29165798-29166066(+)$1	268	86	101	19.1509
guaaaaauauaauau	chr1:21102001-21102260(-)$1	259	80	95	17.1698
uuaaaaagguaaauu	chr3:6620091-6620331(+)$1	240	94	109	16.6981
UAAAAAUGAUAAAAA	chr6:37788278-37788569(+)$1	291	258	273	14.5283
auuacaaaauaaaag	chr7:129747222-129747502(+)$1	280	67	82	15.5660
UUACAAAAAUAAAAU	chr15:90135506-90135799(+)$1	293	17	32	23.8679
uuuaaagaauacaag	chr1:22081416-22081634(-)$1	218	101	116	16.4150
UUUAACAAGUAAUAU	chr4:32041834-32042125(+)$1	291	128	143	16.3207
ucaaaaaaaagaaau	chr2:188386070-188386321(-)$1	251	6	21	17.0754
cuaaaacauuaaaau	chr7:116540183-116540463(+)$1	280	73	88	17.0754
UUAAAAGAAAGAAAU	chr15:34817437-34817732(-)$1	295	30	45	17.0754
CUUAAAAAAUAUAGU	chr11:65266542-65266751(+)$1	209	81	96	17.0754
aagaaaaauuaaaau	chr1:246333534-246333808(-)$1	274	0	15	15.5660
cuaaaacauuaaaau	chr7:116540089-116540363(+)$1	274	167	182	17.0754
UUAAACAAAUAAGAU	chr4:79795451-79795708(+)$1	257	46	61	21.3207
uuaaaaagacauaau	chr7:153105093-153105310(-)$1	217	120	135	17.8301
UUUAAGAAAUAUGAU	chr7:86787279-86787544(+)$1	265	2	17	17.7358
uuuaaaaaauaagug	chr6:20417541-20417816(+)$1	275	199	214	16.4150
UAUAAUAAAUAUAAU	chr7:127025344-127025641(-)$1	297	112	127	18.5849
UUUGAAAAAUAUAUU	chr5:12799792-12800070(+)$1	278	63	78	17.1698
auaaaaaucugaaau	chr8:91269720-91270006(+)$1	286	184	199	13.0188
UUAAAAAAACUAAUU	chr4:111103393-111103674(-)$1	281	70	85	17.0754
UUAAAUAAAUUUAAU	chr5:12751364-12751658(+)$1	294	94	109	19.1509
UAAAAUAAAUAUAAU	chr5:917850-918218(+)$1	368	204	219	20.1886
uuuacaaaauaauau	chrX:110931139-110931398(+)$1	259	174	189	18.7735
UUUAAAAAAUAGAAG	chr18:75698146-75698358(-)$1	212	98	113	20.0000
ugaaauuaauaaagu	chr6:147620962-147621285(+)$1	323	128	143	14.8113
uuauaaauauaauau	chr2:68412361-68412636(-)$1	275	45	60	17.2641
UUAUAUGAAUAAAAU	chr5:40826123-40826381(-)$1	258	144	159	18.1132
UGuaaaaaauagauu	chr3:152040910-152041144(+)$1	234	21	36	16.6981
UAAUAAAAAUUAAAG	chr6:27109013-27109304(-)$1	291	64	79	14.6226
UUCAAGGAAUAAAAG	chr10:81521825-81522143(-)$1	318	76	91	15.6603
UGAAAUGAAUAAAAC	chrX:153938999-153939321(-)$1	322	126	141	14.9999
caaaaauaagaaaau	chr21:39459003-39459266(-)$1	263	70	85	14.5283
UUAAAAAAAUAAAAU	chr11:118358834-118359104(+)$1	270	88	103	27.8301
uccaaaaaauaaaua	chr7:119405889-119406132(-)$1	243	60	75	15.2830
uuuaaauauuaauau	chrX:73469309-73469558(-)$1	249	60	75	16.0377
agaauaaaauaaaac	chr3:6622387-6622621(+)$1	234	207	222	13.5849

#otherMatches

#Struct PSSM
hhnnnnnhhhhhhhh	chr8:91299470-91299719(+)$1	249	92	107	20.9433
DDDD:::::::::::	chr2:184010274-184010535(+)$1	261	15	30	15.4716
55dddd88888888h	chr1:51229694-51229957(-)$1	263	146	161	14.8113
B{DDDDFFFFFF:::	chr18:1348620-1348893(-)$1	273	36	51	15.0943
iiiii"""eeeee&&	chr3:152041029-152041284(+)$1	255	105	120	15.1886
:::::FFFFFF{CCC	chr8:111986248-111986563(-)$1	315	87	102	18.1132
fffff::eeeee!!b	chr19:1050735-1051000(+)$1	265	98	113	14.9056
cccmmmmccc]dddd	chr3:152172131-152172406(+)$1	275	96	111	17.0754
yyyyyyyyyffffff	chr9:123584194-123584528(-)$1	334	74	89	18.0188
ffffff:::::::FF	chr17:68063974-68064261(-)$1	287	118	133	19.4339
99999999ccc::::	chr17:45699405-45699687(+)$1	282	51	66	17.4528
uuuuuuuuuufffff	chr8:130424952-130425200(-)$1	248	91	106	16.1320
ddpppppppdddd]b	chr6:49576331-49576577(-)$1	246	93	108	11.9811
eennnnneeeee:::	chr9:114985260-114985487(-)$1	227	175	190	19.2452
:::iiiiiiiii%%%	chr7:129834412-129834708(-)$1	296	30	45	15.8490
f::::::::::::GG	chr2:29165798-29166066(+)$1	268	86	101	19.1509
JJJJ::::::::::f	chr1:21102001-21102260(-)$1	259	80	95	17.1698
::::iiiiiiiii[c	chr3:6620091-6620331(+)$1	240	94	109	16.6981
nnccc]ccc:::EEE	chr6:37788278-37788569(+)$1	291	258	273	14.5283
zzzzzzzzzzzzzzz	chr7:129747222-129747502(+)$1	280	67	82	15.5660
JJJJJJJJJJ:::==	chr15:90135506-90135799(+)$1	293	17	32	23.8679
HHHH:::::::::::	chr1:22081416-22081634(-)$1	218	101	116	16.4150
eeqqqqqqqqeeeee	chr4:32041834-32042125(+)$1	291	128	143	16.3207
::::::::::::::E	chr2:188386070-188386321(-)$1	251	6	21	17.0754
ttttteeeee4444g	chr7:116540183-116540463(+)$1	280	73	88	17.0754
F::ccc[dddd%%%%	chr15:34817437-34817732(-)$1	295	30	45	17.0754
ccc::::::::::cc	chr11:65266542-65266751(+)$1	209	81	96	17.0754
:EEEEEOOOOOOHHH	chr1:246333534-246333808(-)$1	274	0	15	15.5660
ttttteeeee4444g	chr7:116540089-116540363(+)$1	274	167	182	17.0754
iii[bb^^^^^^^^^	chr4:79795451-79795708(+)$1	257	46	61	21.3207
dd::::::iiiiiii	chr7:153105093-153105310(-)$1	217	120	135	17.8301
GGGGG::::::::ff	chr7:86787279-86787544(+)$1	265	2	17	17.7358
hhhhhh####ddddu	chr6:20417541-20417816(+)$1	275	199	214	16.4150
444ffffffgggggg	chr7:127025344-127025641(-)$1	297	112	127	18.5849
:::::::::iiiiii	chr5:12799792-12800070(+)$1	278	63	78	17.1698
:::::::::ccc[ff	chr8:91269720-91270006(+)$1	286	184	199	13.0188
ee>>>>>>>>>>>>>	chr4:111103393-111103674(-)$1	281	70	85	17.0754
e"""ccc!!ffffff	chr5:12751364-12751658(+)$1	294	94	109	19.1509
iiiiiiieeeee:::	chr5:917850-918218(+)$1	368	204	219	20.1886
ffqqqqqqqqfffff	chrX:110931139-110931398(+)$1	259	174	189	18.7735
gggssssssssssgg	chr18:75698146-75698358(-)$1	212	98	113	20.0000
c>>>>>>>>>>>ddd	chr6:147620962-147621285(+)$1	323	128	143	14.8113
fffff]cccccc]cc	chr2:68412361-68412636(-)$1	275	45	60	17.2641
ccc]dddd4444eee	chr5:40826123-40826381(-)$1	258	144	159	18.1132
hhhhhhhoooooohh	chr3:152040910-152041144(+)$1	234	21	36	16.6981
d:FFFFFFBB{HHHH	chr6:27109013-27109304(-)$1	291	64	79	14.6226
pppppccc55555cc	chr10:81521825-81522143(-)$1	318	76	91	15.6603
ffffff666666eee	chrX:153938999-153939321(-)$1	322	126	141	14.9999
::::::::hhhhhhh	chr21:39459003-39459266(-)$1	263	70	85	14.5283
:::::::::::::::	chr11:118358834-118359104(+)$1	270	88	103	27.8301
DDD::::::::::::	chr7:119405889-119406132(-)$1	243	60	75	15.2830
%%%%ddddmmmmddd	chrX:73469309-73469558(-)$1	249	60	75	16.0377
@@@@@@@@@@@@@@@	chr3:6622387-6622621(+)$1	234	207	222	13.5849

#DB
((.....))))))))	chr8:91299470-91299719(+)$1	1	92	107	20.9433
((((...........	chr2:184010274-184010535(+)$1	1	15	30	15.4716
..))))........)	chr1:51229694-51229957(-)$1	1	146	161	14.8113
(.((((((((((...	chr18:1348620-1348893(-)$1	1	36	51	15.0943
(((((...(((((..	chr3:152041029-152041284(+)$1	1	105	120	15.1886
.....((((((.(((	chr8:111986248-111986563(-)$1	1	87	102	18.1132
)))))..(((((..(	chr19:1050735-1051000(+)$1	1	98	113	14.9056
(((....))).))))	chr3:152172131-152172406(+)$1	1	96	111	17.0754
.........))))))	chr9:123584194-123584528(-)$1	1	74	89	18.0188
)))))).......((	chr17:68063974-68064261(-)$1	1	118	133	19.4339
........)))....	chr17:45699405-45699687(+)$1	1	51	66	17.4528
..........)))))	chr8:130424952-130425200(-)$1	1	91	106	16.1320
((.......)))).)	chr6:49576331-49576577(-)$1	1	93	108	11.9811
((.....)))))...	chr9:114985260-114985487(-)$1	1	175	190	19.2452
...(((((((((...	chr7:129834412-129834708(-)$1	1	30	45	15.8490
)............))	chr2:29165798-29166066(+)$1	1	86	101	19.1509
))))..........(	chr1:21102001-21102260(-)$1	1	80	95	17.1698
....(((((((((.(	chr3:6620091-6620331(+)$1	1	94	109	16.6981
..))).)))...)))	chr6:37788278-37788569(+)$1	1	258	273	14.5283
...............	chr7:129747222-129747502(+)$1	1	67	82	15.5660
((((((((((...((	chr15:90135506-90135799(+)$1	1	17	32	23.8679
((((...........	chr1:22081416-22081634(-)$1	1	101	116	16.4150
((........)))))	chr4:32041834-32042125(+)$1	1	128	143	16.3207
..............(	chr2:188386070-188386321(-)$1	1	6	21	17.0754
.....)))))....)	chr7:116540183-116540463(+)$1	1	73	88	17.0754
(..(((.((((....	chr15:34817437-34817732(-)$1	1	30	45	17.0754
)))..........((	chr11:65266542-65266751(+)$1	1	81	96	17.0754
.(((((......(((	chr1:246333534-246333808(-)$1	1	0	15	15.5660
.....)))))....)	chr7:116540089-116540363(+)$1	1	167	182	17.0754
(((.((.........	chr4:79795451-79795708(+)$1	1	46	61	21.3207
))......(((((((	chr7:153105093-153105310(-)$1	1	120	135	17.8301
(((((........((	chr7:86787279-86787544(+)$1	1	2	17	17.7358
((((((....((((.	chr6:20417541-20417816(+)$1	1	199	214	16.4150
...))))))((((((	chr7:127025344-127025641(-)$1	1	112	127	18.5849
.........((((((	chr5:12799792-12800070(+)$1	1	63	78	17.1698
.........(((.((	chr8:91269720-91270006(+)$1	1	184	199	13.0188
)).............	chr4:111103393-111103674(-)$1	1	70	85	17.0754
(...(((..((((((	chr5:12751364-12751658(+)$1	1	94	109	19.1509
))))))))))))...	chr5:917850-918218(+)$1	1	204	219	20.1886
((........)))))	chrX:110931139-110931398(+)$1	1	174	189	18.7735
(((..........))	chr18:75698146-75698358(-)$1	1	98	113	20.0000
)...........)))	chr6:147620962-147621285(+)$1	1	128	143	14.8113
))))).)))))).))	chr2:68412361-68412636(-)$1	1	45	60	17.2641
))).))))....)))	chr5:40826123-40826381(-)$1	1	144	159	18.1132
(((((((......))	chr3:152040910-152041144(+)$1	1	21	36	16.6981
).((((((((.((((	chr6:27109013-27109304(-)$1	1	64	79	14.6226
.....))).....))	chr10:81521825-81522143(-)$1	1	76	91	15.6603
))))))......)))	chrX:153938999-153939321(-)$1	1	126	141	14.9999
........(((((((	chr21:39459003-39459266(-)$1	1	70	85	14.5283
...............	chr11:118358834-118359104(+)$1	1	88	103	27.8301
(((............	chr7:119405889-119406132(-)$1	1	60	75	15.2830
....((((....)))	chrX:73469309-73469558(-)$1	1	60	75	16.0377
...............	chr3:6622387-6622621(+)$1	1	207	222	13.5849

#PSSM
U : 0.45	u : 0.30	a : 0.09	c : 0.05	A : 0.03	C : 0.03	g : 0.01	
U : 0.39	u : 0.32	A : 0.09	a : 0.07	c : 0.03	g : 0.03	G : 0.03	
a : 0.30	A : 0.30	u : 0.15	U : 0.13	G : 0.05	g : 0.01	C : 0.01	c : 0.01	
a : 0.43	A : 0.37	U : 0.05	G : 0.05	u : 0.03	g : 0.01	C : 0.01	
A : 0.50	a : 0.41	u : 0.03	c : 0.03	
a : 0.43	A : 0.24	U : 0.09	C : 0.07	G : 0.07	g : 0.03	u : 0.03	
A : 0.39	a : 0.37	u : 0.07	G : 0.07	c : 0.03	U : 0.01	g : 0.01	
A : 0.45	a : 0.41	u : 0.05	g : 0.03	U : 0.01	G : 0.01	
A : 0.45	a : 0.37	u : 0.07	c : 0.03	G : 0.03	g : 0.01	
U : 0.41	u : 0.39	a : 0.05	c : 0.03	A : 0.03	G : 0.01	C : 0.01	g : 0.01	
a : 0.43	A : 0.39	g : 0.05	U : 0.05	u : 0.01	C : 0.01	G : 0.01	
a : 0.37	A : 0.30	U : 0.15	u : 0.09	G : 0.03	c : 0.01	g : 0.01	
a : 0.37	A : 0.37	u : 0.11	U : 0.03	C : 0.03	G : 0.03	g : 0.01	
a : 0.39	A : 0.39	u : 0.09	U : 0.05	G : 0.03	g : 0.01	
U : 0.37	u : 0.35	a : 0.07	g : 0.05	G : 0.05	A : 0.03	C : 0.01	c : 0.01	

#score	907.0754716981126
#seq	53
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_UTR_m1_run2.nuc.txt

#NT
uucuu	chr15:49517295-49517548(+)$1	253	94	99	14.9999
uucuu	chr2:75883807-75884048(+)$1	241	217	222	14.9999
UUCUU	chr14:71195134-71195409(-)$1	275	223	228	14.9999
UUCUU	chr2:71214997-71215273(-)$1	276	61	66	14.9999
uucuu	chr4:1387455-1387690(+)$1	235	67	72	14.9999
UUCUU	chr5:112228298-112228614(-)$1	316	46	51	14.9999
UUCUU	chr14:71192966-71193216(-)$1	250	63	68	14.9999
UUCUU	chr12:53805695-53805987(+)$1	292	18	23	14.9999
UUCUU	chr1:113668343-113668618(+)$1	275	131	136	14.9999
UUCUU	chr11:12961209-12961555(+)$1	346	86	91	14.9999
UUCUU	chr19:45912055-45912311(-)$1	256	86	91	14.9999
UUCUU	chr5:167979532-167979789(-)$1	257	98	103	14.9999
UUCUU	chr2:169721742-169722047(-)$1	305	107	112	14.9999
UUCUU	chr2:136743223-136743497(+)$1	274	212	217	14.9999
UUCUU	chr11:118321290-118321599(+)$1	309	257	262	14.9999
uucuu	chr11:9192657-9192914(-)$1	257	111	116	14.9999
UUCUU	chr16:23584978-23585273(+)$1	295	154	159	14.9999
uucuu	chr10:124147010-124147315(+)$1	305	296	301	14.9999
UUCUU	chr19:37825980-37826230(+)$1	250	235	240	14.9999
UUCUU	chr7:141359984-141360341(-)$1	357	321	326	14.9999
uucuu	chr8:59362375-59362649(+)$1	274	5	10	14.9999
uucuu	chr2:97402831-97403074(-)$1	243	214	219	14.9999
UUCUU	chr19:54646376-54646615(+)$1	239	70	75	14.9999
UUCUU	chr11:12962489-12962749(+)$1	260	154	159	14.9999
UUCUU	chr11:6504152-6504406(+)$1	254	87	92	14.9999
UUCUU	chr1:113669354-113669671(+)$1	317	12	17	14.9999
UUCUU	chr2:85547685-85547915(-)$1	230	105	110	14.9999
uucuu	chr10:124146840-124147081(+)$1	241	60	65	14.9999
UUCUU	chr16:23584570-23584797(+)$1	227	80	85	14.9999
UUCUU	chr2:85547144-85547411(-)$1	267	212	217	14.9999
uucuu	chr4:1386719-1386971(+)$1	252	200	205	14.9999
uucuu	chr10:124146475-124146709(+)$1	234	35	40	14.9999
uucuu	chr13:50067723-50068020(+)$1	297	126	131	14.9999
uucuu	chr2:138724975-138725206(+)$1	231	109	114	14.9999
UUCUU	chr18:46855852-46856253(-)$1	401	117	122	14.9999
UUCUU	chr4:186682542-186682895(-)$1	353	134	139	14.9999
uucuu	chr4:1386518-1386801(+)$1	283	6	11	14.9999
uucuu	chr4:1386272-1386539(+)$1	267	88	93	14.9999
uucuu	chr2:75884291-75884533(+)$1	242	34	39	14.9999
UUCUU	chr9:5785784-5786033(-)$1	249	163	168	14.9999
UUCUU	chr1:91966644-91966894(+)$1	250	230	235	14.9999
uucuu	chr9:71398162-71398438(+)$1	276	35	40	14.9999
uucuu	chr13:50068433-50068696(+)$1	263	46	51	14.9999
UUCUU	chr2:85546844-85547085(-)$1	241	208	213	14.9999
UUCUU	chr2:85546723-85546979(-)$1	256	102	107	14.9999
UUCUU	chr2:85547111-85547337(-)$1	226	138	143	14.9999
UUCUU	chr2:74092800-74093047(+)$1	247	75	80	14.9999
UUCUU	chr2:85547835-85548095(-)$1	260	174	179	14.9999
uucuu	chr2:239612-239864(-)$1	252	28	33	14.9999
UUCUU	chr11:119171608-119171867(+)$1	259	18	23	14.9999
UUCUU	chr12:95651917-95652162(+)$1	245	12	17	14.9999
UUCUU	chr5:167980552-167980797(-)$1	245	79	84	14.9999
UUCUU	chr2:71215474-71215703(-)$1	229	83	88	14.9999
UUCUU	chr19:45911588-45911841(-)$1	253	88	93	14.9999
UUCUU	chr7:141478155-141478364(+)$1	209	80	85	14.9999
UUCUU	chr12:56321077-56321339(-)$1	262	65	70	14.9999
uucuu	chr2:239939-240152(-)$1	213	178	183	14.9999
uucuu	chr11:9193462-9193703(-)$1	241	114	119	14.9999
uucuu	chr2:241318-241568(-)$1	250	21	26	14.9999
UUCUU	chr20:36146713-36146951(-)$1	238	193	198	14.9999
UUCUU	chr11:12962560-12962805(+)$1	245	83	88	14.9999
UUCUU	chr18:32918884-32919129(-)$1	245	156	161	14.9999
UUCUU	chr11:6505586-6505882(+)$1	296	45	50	14.9999
UUCUU	chr3:187898030-187898292(+)$1	262	228	233	14.9999

#otherMatches

#Struct PSSM
FF{DD	chr15:48454940-48455204(-)$1	264	36	41	14.9999
wwwww	chr15:49517295-49517548(+)$1	253	94	99	14.9999
:::FF	chr2:75883807-75884048(+)$1	241	217	222	14.9999
:::::	chr14:71195134-71195409(-)$1	275	223	228	14.9999
E{BB{	chr2:71214997-71215273(-)$1	276	61	66	14.9999
hhhhh	chr4:1387455-1387690(+)$1	235	67	72	14.9999
^^^^^	chr5:112228298-112228614(-)$1	316	46	51	14.9999
===gg	chr14:71192966-71193216(-)$1	250	63	68	14.9999
OOOOO	chr12:53805695-53805987(+)$1	292	18	23	14.9999
ddd33	chr1:113668343-113668618(+)$1	275	131	136	14.9999
FFFFF	chr11:12961209-12961555(+)$1	346	86	91	14.9999
^^^^^	chr19:45912055-45912311(-)$1	256	86	91	14.9999
ggggg	chr5:167979532-167979789(-)$1	257	98	103	14.9999
+++++	chr2:169721742-169722047(-)$1	305	107	112	14.9999
+++++	chr2:136743223-136743497(+)$1	274	212	217	14.9999
iiiii	chr11:118321290-118321599(+)$1	309	257	262	14.9999
nnnnn	chr11:9192657-9192914(-)$1	257	111	116	14.9999
=====	chr16:23584978-23585273(+)$1	295	154	159	14.9999
JJJJJ	chr10:124147010-124147315(+)$1	305	296	301	14.9999
dddd:	chr19:37825980-37826230(+)$1	250	235	240	14.9999
^^^^^	chr7:141359984-141360341(-)$1	357	321	326	14.9999
::DDD	chr8:59362375-59362649(+)$1	274	5	10	14.9999
:::::	chr2:97402831-97403074(-)$1	243	214	219	14.9999
ff]dd	chr19:54646376-54646615(+)$1	239	70	75	14.9999
FFFFK	chr11:12962489-12962749(+)$1	260	154	159	14.9999
ggggg	chr11:6504152-6504406(+)$1	254	87	92	14.9999
KKHHH	chr1:113669354-113669671(+)$1	317	12	17	14.9999
ffffq	chr2:85547685-85547915(-)$1	230	105	110	14.9999
2bb::	chr10:124146840-124147081(+)$1	241	60	65	14.9999
ooooo	chr16:23584570-23584797(+)$1	227	80	85	14.9999
::JJJ	chr2:85547144-85547411(-)$1	267	212	217	14.9999
:::::	chr4:1386719-1386971(+)$1	252	200	205	14.9999
:::::	chr10:124146475-124146709(+)$1	234	35	40	14.9999
:::::	chr13:50067723-50068020(+)$1	297	126	131	14.9999
bssss	chr2:138724975-138725206(+)$1	231	109	114	14.9999
ee!!e	chr18:46855852-46856253(-)$1	401	117	122	14.9999
mdddd	chr4:186682542-186682895(-)$1	353	134	139	14.9999
"""ff	chr4:1386518-1386801(+)$1	283	6	11	14.9999
0000f	chr4:1386272-1386539(+)$1	267	88	93	14.9999
c[ccc	chr2:75884291-75884533(+)$1	242	34	39	14.9999
HHHHH	chr9:5785784-5786033(-)$1	249	163	168	14.9999
wgggg	chr1:91966644-91966894(+)$1	250	230	235	14.9999
:::::	chr9:71398162-71398438(+)$1	276	35	40	14.9999
eeee"	chr13:50068433-50068696(+)$1	263	46	51	14.9999
ppppp	chr2:85546844-85547085(-)$1	241	208	213	14.9999
ppppp	chr2:85546723-85546979(-)$1	256	102	107	14.9999
::JJJ	chr2:85547111-85547337(-)$1	226	138	143	14.9999
ooooo	chr2:74092800-74093047(+)$1	247	75	80	14.9999
eeeec	chr2:85547835-85548095(-)$1	260	174	179	14.9999
:::::	chr2:239612-239864(-)$1	252	28	33	14.9999
'''''	chr11:119171608-119171867(+)$1	259	18	23	14.9999
:::::	chr12:95651917-95652162(+)$1	245	12	17	14.9999
dd[dd	chr5:167980552-167980797(-)$1	245	79	84	14.9999
ii22e	chr2:71215474-71215703(-)$1	229	83	88	14.9999
vvvvv	chr19:45911588-45911841(-)$1	253	88	93	14.9999
ppppp	chr7:141478155-141478364(+)$1	209	80	85	14.9999
ooooc	chr12:56321077-56321339(-)$1	262	65	70	14.9999
mmmmd	chr2:239939-240152(-)$1	213	178	183	14.9999
ccc22	chr11:9193462-9193703(-)$1	241	114	119	14.9999
:::GG	chr2:241318-241568(-)$1	250	21	26	14.9999
2eeee	chr20:36146713-36146951(-)$1	238	193	198	14.9999
:GGGG	chr11:12962560-12962805(+)$1	245	83	88	14.9999
DDDGG	chr18:32918884-32919129(-)$1	245	156	161	14.9999
eeee!	chr11:6505586-6505882(+)$1	296	45	50	14.9999
%ffff	chr3:187898030-187898292(+)$1	262	228	233	14.9999

#DB
((.((	chr15:48454940-48455204(-)$1	1	36	41	14.9999
.....	chr15:49517295-49517548(+)$1	1	94	99	14.9999
...))	chr2:75883807-75884048(+)$1	1	217	222	14.9999
.....	chr14:71195134-71195409(-)$1	1	223	228	14.9999
(.((.	chr2:71214997-71215273(-)$1	1	61	66	14.9999
)))))	chr4:1387455-1387690(+)$1	1	67	72	14.9999
.....	chr5:112228298-112228614(-)$1	1	46	51	14.9999
)))((	chr14:71192966-71193216(-)$1	1	63	68	14.9999
.....	chr12:53805695-53805987(+)$1	1	18	23	14.9999
)))..	chr1:113668343-113668618(+)$1	1	131	136	14.9999
(((((	chr11:12961209-12961555(+)$1	1	86	91	14.9999
.....	chr19:45912055-45912311(-)$1	1	86	91	14.9999
(((((	chr5:167979532-167979789(-)$1	1	98	103	14.9999
.....	chr2:169721742-169722047(-)$1	1	107	112	14.9999
.....	chr2:136743223-136743497(+)$1	1	212	217	14.9999
(((((	chr11:118321290-118321599(+)$1	1	257	262	14.9999
.....	chr11:9192657-9192914(-)$1	1	111	116	14.9999
(((((	chr16:23584978-23585273(+)$1	1	154	159	14.9999
)))))	chr10:124147010-124147315(+)$1	1	296	301	14.9999
)))).	chr19:37825980-37826230(+)$1	1	235	240	14.9999
.....	chr7:141359984-141360341(-)$1	1	321	326	14.9999
..(((	chr8:59362375-59362649(+)$1	1	5	10	14.9999
.....	chr2:97402831-97403074(-)$1	1	214	219	14.9999
)).))	chr19:54646376-54646615(+)$1	1	70	75	14.9999
((((.	chr11:12962489-12962749(+)$1	1	154	159	14.9999
)))))	chr11:6504152-6504406(+)$1	1	87	92	14.9999
..(((	chr1:113669354-113669671(+)$1	1	12	17	14.9999
((((.	chr2:85547685-85547915(-)$1	1	105	110	14.9999
.))..	chr10:124146840-124147081(+)$1	1	60	65	14.9999
.....	chr16:23584570-23584797(+)$1	1	80	85	14.9999
..)))	chr2:85547144-85547411(-)$1	1	212	217	14.9999
.....	chr4:1386719-1386971(+)$1	1	200	205	14.9999
.....	chr10:124146475-124146709(+)$1	1	35	40	14.9999
.....	chr13:50067723-50068020(+)$1	1	126	131	14.9999
(....	chr2:138724975-138725206(+)$1	1	109	114	14.9999
((..(	chr18:46855852-46856253(-)$1	1	117	122	14.9999
.))))	chr4:186682542-186682895(-)$1	1	134	139	14.9999
...((	chr4:1386518-1386801(+)$1	1	6	11	14.9999
....)	chr4:1386272-1386539(+)$1	1	88	93	14.9999
(.(((	chr2:75884291-75884533(+)$1	1	34	39	14.9999
(((((	chr9:5785784-5786033(-)$1	1	163	168	14.9999
.))))	chr1:91966644-91966894(+)$1	1	230	235	14.9999
.....	chr9:71398162-71398438(+)$1	1	35	40	14.9999
((((.	chr13:50068433-50068696(+)$1	1	46	51	14.9999
.....	chr2:85546844-85547085(-)$1	1	208	213	14.9999
.....	chr2:85546723-85546979(-)$1	1	102	107	14.9999
..)))	chr2:85547111-85547337(-)$1	1	138	143	14.9999
.....	chr2:74092800-74093047(+)$1	1	75	80	14.9999
)))))	chr2:85547835-85548095(-)$1	1	174	179	14.9999
.....	chr2:239612-239864(-)$1	1	28	33	14.9999
.....	chr11:119171608-119171867(+)$1	1	18	23	14.9999
.....	chr12:95651917-95652162(+)$1	1	12	17	14.9999
((.((	chr5:167980552-167980797(-)$1	1	79	84	14.9999
))..)	chr2:71215474-71215703(-)$1	1	83	88	14.9999
.....	chr19:45911588-45911841(-)$1	1	88	93	14.9999
.....	chr7:141478155-141478364(+)$1	1	80	85	14.9999
....)	chr12:56321077-56321339(-)$1	1	65	70	14.9999
....)	chr2:239939-240152(-)$1	1	178	183	14.9999
)))..	chr11:9193462-9193703(-)$1	1	114	119	14.9999
...((	chr2:241318-241568(-)$1	1	21	26	14.9999
.))))	chr20:36146713-36146951(-)$1	1	193	198	14.9999
.))))	chr11:12962560-12962805(+)$1	1	83	88	14.9999
)))))	chr18:32918884-32919129(-)$1	1	156	161	14.9999
((((.	chr11:6505586-6505882(+)$1	1	45	50	14.9999
.((((	chr3:187898030-187898292(+)$1	1	228	233	14.9999

#PSSM
U : 0.66	u : 0.33	
U : 0.66	u : 0.33	
C : 0.66	c : 0.33	
U : 0.66	u : 0.33	
U : 0.66	u : 0.33	

#score	974.9999999999999
#seq	65
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_UTR_m3_run2.nuc.txt

#NT
AUGU	chr2:159499055-159499315(+)$1	260	81	85	12.0000
AUGU	chr10:122622309-122622535(+)$1	226	188	192	12.0000
augu	chr22:18171643-18172010(+)$1	367	35	39	12.0000
AUGU	chr2:42528402-42528625(+)$1	223	52	56	12.0000
AUGU	chr10:69716562-69716828(-)$1	266	7	11	12.0000
AUGU	chr6:86257147-86257365(-)$1	218	76	80	12.0000
AUGU	chr15:85660874-85661160(+)$1	286	22	26	12.0000
AUGU	chr10:113915552-113915822(-)$1	270	186	190	12.0000
AUGU	chr19:23541388-23541715(-)$1	327	62	66	12.0000
AUGU	chr2:61717799-61718011(-)$1	212	80	84	12.0000
AUGU	chr4:83276386-83276657(-)$1	271	59	63	12.0000
AUGU	chr17:3732514-3732764(-)$1	250	46	50	12.0000
AUGU	chr8:29018179-29018462(-)$1	283	9	13	12.0000
AUGU	chr17:34165411-34165653(+)$1	242	187	191	12.0000
AUGU	chr2:20526970-20527189(-)$1	219	123	127	12.0000
AUGU	chr10:69793621-69793885(-)$1	264	177	181	12.0000
AUGU	chr5:54654308-54654554(+)$1	246	38	42	12.0000
AUGU	chr2:74592538-74592885(-)$1	347	67	71	12.0000
AUGU	chr6:136582058-136582337(-)$1	279	168	172	12.0000
AUGU	chr17:38061577-38061849(-)$1	272	21	25	12.0000
AUGU	chr5:133943953-133944218(-)$1	265	53	57	12.0000
AUGU	chr5:37120228-37120464(-)$1	236	4	8	12.0000
AUGU	chr7:27831536-27831802(+)$1	266	12	16	12.0000
AUGU	chr2:173429606-173429899(+)$1	293	174	178	12.0000
AUGU	chr19:10787819-10788070(+)$1	251	203	207	12.0000
AUGU	chr14:20924099-20924360(+)$1	261	117	121	12.0000
AUGU	chr5:134120010-134120253(+)$1	243	97	101	12.0000
AUGU	chr3:132322004-132322264(-)$1	260	4	8	12.0000
AUGU	chr16:20808111-20808367(+)$1	256	45	49	12.0000
AUGU	chr6:163899711-163899969(+)$1	258	19	23	12.0000
AUGU	chr5:72178193-72178454(+)$1	261	26	30	12.0000
AUGU	chr17:45216004-45216250(-)$1	246	87	91	12.0000
AUGU	chr6:163982917-163983195(+)$1	278	77	81	12.0000
AUGU	chr9:107546390-107546629(-)$1	239	26	30	12.0000
AUGU	chr3:132358234-132358490(-)$1	256	167	171	12.0000
AUGU	chr17:8166992-8167221(+)$1	229	200	204	12.0000
AUGU	chr13:40234889-40235122(+)$1	233	28	32	12.0000
AUGU	chr2:8919705-8919930(-)$1	225	161	165	12.0000
AUGU	chr2:64084907-64085173(+)$1	266	179	183	12.0000
AUGU	chr2:44116853-44117083(-)$1	230	61	65	12.0000
AUGU	chr20:33509282-33509495(+)$1	213	20	24	12.0000
AUGU	chr2:109088398-109088645(+)$1	247	50	54	12.0000
AUGU	chr2:43768291-43768557(-)$1	266	118	122	12.0000
AUGU	chr4:170506557-170506801(-)$1	244	65	69	12.0000
AUGU	chr7:94157399-94157624(+)$1	225	24	28	12.0000
AUGU	chr11:11971348-11971612(+)$1	264	22	26	12.0000
AUGU	chr9:100777767-100778009(+)$1	242	112	116	12.0000
AUGU	chr3:39125548-39125772(+)$1	224	5	9	12.0000
AUGU	chr2:109087129-109087417(+)$1	288	21	25	12.0000
AUGU	chr11:77689987-77690247(-)$1	260	192	196	12.0000
AUGU	chr2:153529448-153529656(-)$1	208	8	12	12.0000
AUGU	chr3:42676004-42676239(+)$1	235	28	32	12.0000
AUGU	chr17:16056552-16056784(-)$1	232	31	35	12.0000
AUGU	chr19:10781174-10781384(+)$1	210	149	153	12.0000
AUGU	chr5:79946484-79946744(-)$1	260	160	164	12.0000
AUGU	chr12:51390492-51390768(-)$1	276	7	11	12.0000
AUGU	chr12:46355375-46355648(-)$1	273	75	79	12.0000
AUGU	chr5:59943120-59943403(-)$1	283	99	103	12.0000
AUGU	chr5:134124102-134124312(+)$1	210	160	164	12.0000
AUGU	chr12:112481549-112481773(-)$1	224	86	90	12.0000
AUGU	chr2:122154702-122154941(-)$1	239	56	60	12.0000
AUGU	chr20:34302184-34302411(-)$1	227	94	98	12.0000
AUGU	chr1:145746937-145747193(+)$1	256	132	136	12.0000
AUGU	chr2:17888386-17888648(-)$1	262	144	148	12.0000
AUGU	chr2:216983676-216983939(+)$1	263	188	192	12.0000
AUGU	chr10:96352048-96352303(+)$1	255	89	93	12.0000
AUGU	chr8:48320364-48320620(+)$1	256	130	134	12.0000
AUGU	chr16:8992126-8992355(-)$1	229	36	40	12.0000
AUGU	chr2:143712277-143712534(+)$1	257	86	90	12.0000
AUGU	chr11:129991424-129991686(+)$1	262	52	56	12.0000
AUGU	chr1:224588552-224588832(-)$1	280	228	232	12.0000
AUGU	chr12:69128389-69128598(+)$1	209	19	23	12.0000
AUGU	chr17:65105642-65105898(-)$1	256	15	19	12.0000
AUGU	chr6:146269307-146269582(-)$1	275	35	39	12.0000
AUGU	chr14:35002591-35002828(-)$1	237	41	45	12.0000
AUGU	chr13:51941837-51942089(-)$1	252	85	89	12.0000
AUGU	chrX:154466957-154467228(+)$1	271	119	123	12.0000
AUGU	chr19:19121011-19121248(-)$1	237	67	71	12.0000
AUGU	chr3:33557477-33557720(-)$1	243	20	24	12.0000
AUGU	chr2:201997650-201997889(+)$1	239	63	67	12.0000

#otherMatches

#Struct PSSM
eeee	chr3:132322064-132322271(-)$1	207	11	15	12.0000
ppdd	chr2:159499055-159499315(+)$1	260	81	85	12.0000
qqqq	chr10:122622309-122622535(+)$1	226	188	192	12.0000
mmmm	chr22:18171643-18172010(+)$1	367	35	39	12.0000
{DDD	chr2:42528402-42528625(+)$1	223	52	56	12.0000
PPPP	chr10:69716562-69716828(-)$1	266	7	11	12.0000
2ccc	chr6:86257147-86257365(-)$1	218	76	80	12.0000
''cc	chr15:85660874-85661160(+)$1	286	22	26	12.0000
i[cc	chr10:113915552-113915822(-)$1	270	186	190	12.0000
eeee	chr19:23541388-23541715(-)$1	327	62	66	12.0000
gggg	chr2:61717799-61718011(-)$1	212	80	84	12.0000
FFii	chr4:83276386-83276657(-)$1	271	59	63	12.0000
ffff	chr17:3732514-3732764(-)$1	250	46	50	12.0000
dddd	chr8:29018179-29018462(-)$1	283	9	13	12.0000
:CCC	chr17:34165411-34165653(+)$1	242	187	191	12.0000
::dd	chr2:20526970-20527189(-)$1	219	123	127	12.0000
::ee	chr10:69793621-69793885(-)$1	264	177	181	12.0000
{III	chr5:54654308-54654554(+)$1	246	38	42	12.0000
dda[	chr2:74592538-74592885(-)$1	347	67	71	12.0000
iiee	chr6:136582058-136582337(-)$1	279	168	172	12.0000
rrrr	chr17:38061577-38061849(-)$1	272	21	25	12.0000
cc[a	chr5:133943953-133944218(-)$1	265	53	57	12.0000
gggg	chr5:37120228-37120464(-)$1	236	4	8	12.0000
::EE	chr7:27831536-27831802(+)$1	266	12	16	12.0000
cnnn	chr2:173429606-173429899(+)$1	293	174	178	12.0000
##ff	chr19:10787819-10788070(+)$1	251	203	207	12.0000
''''	chr14:20924099-20924360(+)$1	261	117	121	12.0000
:JJJ	chr5:134120010-134120253(+)$1	243	97	101	12.0000
{JJJ	chr3:132322004-132322264(-)$1	260	4	8	12.0000
"bb[	chr16:20808111-20808367(+)$1	256	45	49	12.0000
::::	chr6:163899711-163899969(+)$1	258	19	23	12.0000
bb[e	chr5:72178193-72178454(+)$1	261	26	30	12.0000
gggg	chr17:45216004-45216250(-)$1	246	87	91	12.0000
:ccc	chr6:163982917-163983195(+)$1	278	77	81	12.0000
[hhh	chr9:107546390-107546629(-)$1	239	26	30	12.0000
iiii	chr3:132358234-132358490(-)$1	256	167	171	12.0000
mmee	chr17:8166992-8167221(+)$1	229	200	204	12.0000
%ggg	chr13:40234889-40235122(+)$1	233	28	32	12.0000
ccc2	chr2:8919705-8919930(-)$1	225	161	165	12.0000
bb]d	chr2:64084907-64085173(+)$1	266	179	183	12.0000
eeee	chr2:44116853-44117083(-)$1	230	61	65	12.0000
!!ag	chr20:33509282-33509495(+)$1	213	20	24	12.0000
]bb4	chr2:109088398-109088645(+)$1	247	50	54	12.0000
hh]c	chr2:43768291-43768557(-)$1	266	118	122	12.0000
&&&&	chr4:170506557-170506801(-)$1	244	65	69	12.0000
geee	chr7:94157399-94157624(+)$1	225	24	28	12.0000
{A{J	chr11:11971348-11971612(+)$1	264	22	26	12.0000
GGGG	chr9:100777767-100778009(+)$1	242	112	116	12.0000
ffff	chr3:39125548-39125772(+)$1	224	5	9	12.0000
:FFF	chr2:109087129-109087417(+)$1	288	21	25	12.0000
FFF}	chr11:77689987-77690247(-)$1	260	192	196	12.0000
h[bb	chr2:153529448-153529656(-)$1	208	8	12	12.0000
IIII	chr3:42676004-42676239(+)$1	235	28	32	12.0000
hhhh	chr17:16056552-16056784(-)$1	232	31	35	12.0000
mmbb	chr19:10781174-10781384(+)$1	210	149	153	12.0000
ddqq	chr5:79946484-79946744(-)$1	260	160	164	12.0000
ggg[	chr12:51390492-51390768(-)$1	276	7	11	12.0000
::::	chr12:46355375-46355648(-)$1	273	75	79	12.0000
d[cc	chr5:59943120-59943403(-)$1	283	99	103	12.0000
::::	chr5:134124102-134124312(+)$1	210	160	164	12.0000
====	chr12:112481549-112481773(-)$1	224	86	90	12.0000
FFFF	chr2:122154702-122154941(-)$1	239	56	60	12.0000
!bb[	chr20:34302184-34302411(-)$1	227	94	98	12.0000
::::	chr1:145746937-145747193(+)$1	256	132	136	12.0000
"bb[	chr2:17888386-17888648(-)$1	262	144	148	12.0000
DDDD	chr2:216983676-216983939(+)$1	263	188	192	12.0000
IIIP	chr10:96352048-96352303(+)$1	255	89	93	12.0000
2ccc	chr8:48320364-48320620(+)$1	256	130	134	12.0000
:eee	chr16:8992126-8992355(-)$1	229	36	40	12.0000
2eee	chr2:143712277-143712534(+)$1	257	86	90	12.0000
cc]f	chr11:129991424-129991686(+)$1	262	52	56	12.0000
???C	chr1:224588552-224588832(-)$1	280	228	232	12.0000
eee!	chr12:69128389-69128598(+)$1	209	19	23	12.0000
ffff	chr17:65105642-65105898(-)$1	256	15	19	12.0000
{DDD	chr6:146269307-146269582(-)$1	275	35	39	12.0000
fmmm	chr14:35002591-35002828(-)$1	237	41	45	12.0000
g:II	chr13:51941837-51942089(-)$1	252	85	89	12.0000
[ccc	chrX:154466957-154467228(+)$1	271	119	123	12.0000
44ee	chr19:19121011-19121248(-)$1	237	67	71	12.0000
LDDD	chr3:33557477-33557720(-)$1	243	20	24	12.0000
mmdd	chr2:201997650-201997889(+)$1	239	63	67	12.0000

#DB
((((	chr3:132322064-132322271(-)$1	1	11	15	12.0000
..))	chr2:159499055-159499315(+)$1	1	81	85	12.0000
....	chr10:122622309-122622535(+)$1	1	188	192	12.0000
....	chr22:18171643-18172010(+)$1	1	35	39	12.0000
.(((	chr2:42528402-42528625(+)$1	1	52	56	12.0000
....	chr10:69716562-69716828(-)$1	1	7	11	12.0000
.)))	chr6:86257147-86257365(-)$1	1	76	80	12.0000
..((	chr15:85660874-85661160(+)$1	1	22	26	12.0000
(.((	chr10:113915552-113915822(-)$1	1	186	190	12.0000
))))	chr19:23541388-23541715(-)$1	1	62	66	12.0000
((((	chr2:61717799-61718011(-)$1	1	80	84	12.0000
((((	chr4:83276386-83276657(-)$1	1	59	63	12.0000
((((	chr17:3732514-3732764(-)$1	1	46	50	12.0000
))))	chr8:29018179-29018462(-)$1	1	9	13	12.0000
.)))	chr17:34165411-34165653(+)$1	1	187	191	12.0000
..((	chr2:20526970-20527189(-)$1	1	123	127	12.0000
..((	chr10:69793621-69793885(-)$1	1	177	181	12.0000
.(((	chr5:54654308-54654554(+)$1	1	38	42	12.0000
))(.	chr2:74592538-74592885(-)$1	1	67	71	12.0000
))((	chr6:136582058-136582337(-)$1	1	168	172	12.0000
....	chr17:38061577-38061849(-)$1	1	21	25	12.0000
((.(	chr5:133943953-133944218(-)$1	1	53	57	12.0000
((((	chr5:37120228-37120464(-)$1	1	4	8	12.0000
..((	chr7:27831536-27831802(+)$1	1	12	16	12.0000
(...	chr2:173429606-173429899(+)$1	1	174	178	12.0000
..((	chr19:10787819-10788070(+)$1	1	203	207	12.0000
....	chr14:20924099-20924360(+)$1	1	117	121	12.0000
.(((	chr5:134120010-134120253(+)$1	1	97	101	12.0000
.(((	chr3:132322004-132322264(-)$1	1	4	8	12.0000
.((.	chr16:20808111-20808367(+)$1	1	45	49	12.0000
....	chr6:163899711-163899969(+)$1	1	19	23	12.0000
((.(	chr5:72178193-72178454(+)$1	1	26	30	12.0000
))))	chr17:45216004-45216250(-)$1	1	87	91	12.0000
.(((	chr6:163982917-163983195(+)$1	1	77	81	12.0000
.(((	chr9:107546390-107546629(-)$1	1	26	30	12.0000
))))	chr3:132358234-132358490(-)$1	1	167	171	12.0000
..))	chr17:8166992-8167221(+)$1	1	200	204	12.0000
.(((	chr13:40234889-40235122(+)$1	1	28	32	12.0000
))).	chr2:8919705-8919930(-)$1	1	161	165	12.0000
)).)	chr2:64084907-64085173(+)$1	1	179	183	12.0000
))))	chr2:44116853-44117083(-)$1	1	61	65	12.0000
..((	chr20:33509282-33509495(+)$1	1	20	24	12.0000
.)).	chr2:109088398-109088645(+)$1	1	50	54	12.0000
)).)	chr2:43768291-43768557(-)$1	1	118	122	12.0000
....	chr4:170506557-170506801(-)$1	1	65	69	12.0000
((((	chr7:94157399-94157624(+)$1	1	24	28	12.0000
.(.(	chr11:11971348-11971612(+)$1	1	22	26	12.0000
((((	chr9:100777767-100778009(+)$1	1	112	116	12.0000
((((	chr3:39125548-39125772(+)$1	1	5	9	12.0000
.(((	chr2:109087129-109087417(+)$1	1	21	25	12.0000
))).	chr11:77689987-77690247(-)$1	1	192	196	12.0000
(.((	chr2:153529448-153529656(-)$1	1	8	12	12.0000
((((	chr3:42676004-42676239(+)$1	1	28	32	12.0000
((((	chr17:16056552-16056784(-)$1	1	31	35	12.0000
..))	chr19:10781174-10781384(+)$1	1	149	153	12.0000
((..	chr5:79946484-79946744(-)$1	1	160	164	12.0000
(((.	chr12:51390492-51390768(-)$1	1	7	11	12.0000
....	chr12:46355375-46355648(-)$1	1	75	79	12.0000
(.((	chr5:59943120-59943403(-)$1	1	99	103	12.0000
....	chr5:134124102-134124312(+)$1	1	160	164	12.0000
((((	chr12:112481549-112481773(-)$1	1	86	90	12.0000
((((	chr2:122154702-122154941(-)$1	1	56	60	12.0000
.((.	chr20:34302184-34302411(-)$1	1	94	98	12.0000
....	chr1:145746937-145747193(+)$1	1	132	136	12.0000
.((.	chr2:17888386-17888648(-)$1	1	144	148	12.0000
))))	chr2:216983676-216983939(+)$1	1	188	192	12.0000
(((.	chr10:96352048-96352303(+)$1	1	89	93	12.0000
.)))	chr8:48320364-48320620(+)$1	1	130	134	12.0000
.(((	chr16:8992126-8992355(-)$1	1	36	40	12.0000
.)))	chr2:143712277-143712534(+)$1	1	86	90	12.0000
)).)	chr11:129991424-129991686(+)$1	1	52	56	12.0000
...)	chr1:224588552-224588832(-)$1	1	228	232	12.0000
(((.	chr12:69128389-69128598(+)$1	1	19	23	12.0000
))))	chr17:65105642-65105898(-)$1	1	15	19	12.0000
.(((	chr6:146269307-146269582(-)$1	1	35	39	12.0000
(...	chr14:35002591-35002828(-)$1	1	41	45	12.0000
).((	chr13:51941837-51942089(-)$1	1	85	89	12.0000
.(((	chrX:154466957-154467228(+)$1	1	119	123	12.0000
..))	chr19:19121011-19121248(-)$1	1	67	71	12.0000
.(((	chr3:33557477-33557720(-)$1	1	20	24	12.0000
..))	chr2:201997650-201997889(+)$1	1	63	67	12.0000

#PSSM
A : 0.98	a : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
U : 0.98	u : 0.01	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_transcript_m3_run1.nuc.txt

#NT
cgucauccauguaucaauccaugcauccaccuguccauccauccauccauccauccauccaccuaaccauccauucauccaugcauccaucuguccauucauccauccauccauccauccaucuaaccauccauccauccaggcauccaugcauccauccacuuguucauucauccauucaggcaugcaccaguccuugcauccauccaugcauccaccuguccauccauccauccauccauccauccauccauccauccaugcaucaa	chr11:63881520-63881833(-)$1	313	44	313	508.6666
auucaucuauccauccacucacccacccaccuacccauccacccaucuauccauccacucagcuauccauccauccauccauccauccauccacucagcuauucauccauccacccacccauccauccacucagcuauucauucauccauccauccacccaccuacccauccacccagcuauucauccauccauccauccauccaucuauucacccaucuaguuaucaucaguauagauucaugaauuucuauuuuauucaucagguua	chr6:158475040-158475474(+)$1	434	94	363	493.6666

#otherMatches

#Struct PSSM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::	chr19:443081-443437(-)$1	356	26	295	531.9999
::::::::ffffffooooooffffff::::::::::::::::::::::::::::::::::::::::::::::::::::::ffffff$$$$$dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd333ffffff:::::::::::::::::::::::::::bb[ccc[bb!!bb"""eeeeeooooooeeeee333bb22bb]cccbb::::::::::::::::::::::::::::::::FFFFFF:::	chr11:63881520-63881833(-)$1	313	44	313	508.6666
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd::::::::::::::::::::::::::::::::dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd::::::::::::::::::::::::::::eeeee"""eeeeevvvvvvvvvvvvveeeee333eeeee::::ffffff[bbmmmmbb]ff	chr6:158475040-158475474(+)$1	434	94	363	493.6666

#DB
.............................................................................................................................................................................................................................................................................	chr19:443081-443437(-)$1	1	26	295	531.9999
........((((((......))))))......................................................((((((.....((((..............................................))))...))))))...........................((.(((.((..((...(((((......)))))...))..)).)))))................................))))))...	chr11:63881520-63881833(-)$1	1	44	313	508.6666
............................................................((((................................))))................................((((........................................))))............................(((((...(((((.............)))))...)))))....((((((.((....)).))	chr6:158475040-158475474(+)$1	1	94	363	493.6666

#PSSM
a : 0.66	c : 0.33	
c : 0.33	g : 0.33	u : 0.33	
u : 0.66	c : 0.33	
c : 1.00	
a : 0.66	g : 0.33	
u : 1.00	
c : 1.00	
c : 0.66	u : 0.33	
a : 1.00	
u : 1.00	
c : 0.66	g : 0.33	
c : 0.66	u : 0.33	
a : 1.00	
u : 1.00	
c : 1.00	
c : 0.66	a : 0.33	
a : 1.00	
u : 0.66	c : 0.33	
u : 0.66	c : 0.33	
c : 1.00	
a : 1.00	
u : 0.66	c : 0.33	
c : 0.66	g : 0.33	
c : 1.00	
a : 1.00	
c : 0.66	u : 0.33	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
u : 0.66	c : 0.33	
a : 0.66	g : 0.33	
u : 0.66	c : 0.33	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 0.66	c : 0.33	
c : 1.00	
c : 1.00	
a : 0.66	g : 0.33	
u : 1.00	
c : 1.00	
c : 0.66	u : 0.33	
a : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 0.66	c : 0.33	
c : 1.00	
c : 1.00	
a : 1.00	
u : 0.66	c : 0.33	
c : 0.66	u : 0.33	
c : 1.00	
a : 1.00	
c : 0.66	g : 0.33	
c : 1.00	
u : 1.00	
a : 1.00	
c : 0.33	a : 0.33	u : 0.33	
c : 0.66	a : 0.33	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
c : 0.66	u : 0.33	
c : 1.00	
a : 1.00	
u : 0.66	c : 0.33	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
c : 0.66	g : 0.33	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 0.66	u : 0.33	
a : 0.66	g : 0.33	
c : 0.66	u : 0.33	
c : 0.66	u : 0.33	
c : 1.00	
a : 1.00	
u : 0.66	g : 0.33	
c : 0.66	u : 0.33	
c : 0.66	u : 0.33	
a : 1.00	
u : 0.66	c : 0.33	
u : 0.66	c : 0.33	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 0.66	c : 0.33	
c : 1.00	
c : 1.00	
a : 1.00	
c : 0.66	u : 0.33	
c : 1.00	
c : 1.00	
a : 1.00	
u : 0.66	c : 0.33	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
c : 0.66	g : 0.33	
c : 0.66	u : 0.33	
a : 1.00	
c : 0.33	a : 0.33	u : 0.33	
c : 1.00	
c : 0.66	u : 0.33	
a : 1.00	
u : 0.66	c : 0.33	
u : 0.66	c : 0.33	
c : 1.00	
a : 1.00	
u : 0.66	g : 0.33	
c : 1.00	
c : 0.66	u : 0.33	
a : 1.00	
u : 0.66	c : 0.33	
c : 0.66	u : 0.33	
c : 1.00	
a : 1.00	
c : 0.33	g : 0.33	u : 0.33	
c : 0.33	g : 0.33	u : 0.33	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
c : 0.66	g : 0.33	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 0.66	u : 0.33	
a : 0.66	g : 0.33	
u : 0.66	c : 0.33	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 0.66	u : 0.33	
u : 0.66	c : 0.33	
a : 0.66	g : 0.33	
u : 0.66	c : 0.33	
c : 0.66	u : 0.33	
c : 1.00	
a : 1.00	
u : 0.66	a : 0.33	
c : 0.66	u : 0.33	
c : 0.66	u : 0.33	
a : 1.00	
u : 0.66	c : 0.33	
c : 1.00	
c : 1.00	
a : 1.00	
u : 0.66	g : 0.33	
c : 0.66	u : 0.33	
u : 0.66	c : 0.33	
a : 0.66	g : 0.33	
u : 0.66	g : 0.33	
c : 0.33	g : 0.33	u : 0.33	
c : 1.00	
a : 1.00	
u : 1.00	
c : 0.66	g : 0.33	
c : 1.00	
a : 1.00	
u : 0.66	c : 0.33	
c : 0.66	u : 0.33	
c : 0.66	a : 0.33	
a : 0.66	g : 0.33	
u : 0.66	c : 0.33	
c : 1.00	
c : 1.00	
a : 0.66	u : 0.33	
u : 1.00	
c : 0.66	g : 0.33	
c : 1.00	
a : 1.00	
u : 0.66	c : 0.33	
c : 0.66	u : 0.33	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
u : 0.66	c : 0.33	
a : 1.00	
u : 0.66	c : 0.33	
c : 0.33	g : 0.33	u : 0.33	
c : 1.00	
a : 1.00	
c : 0.66	u : 0.33	
c : 1.00	
c : 1.00	
a : 1.00	
u : 0.66	c : 0.33	
c : 1.00	
u : 0.66	c : 0.33	
a : 0.66	g : 0.33	
c : 0.33	u : 0.33	g : 0.33	
c : 0.66	u : 0.33	
c : 0.66	u : 0.33	
a : 1.00	
u : 1.00	
c : 0.66	g : 0.33	
c : 0.66	a : 0.33	
a : 0.66	u : 0.33	
c : 0.66	u : 0.33	
u : 0.33	c : 0.33	a : 0.33	
c : 0.66	g : 0.33	
a : 0.66	u : 0.33	
u : 0.66	a : 0.33	
c : 0.66	u : 0.33	
u : 0.33	c : 0.33	a : 0.33	
a : 0.66	g : 0.33	
c : 0.33	u : 0.33	a : 0.33	
c : 0.66	u : 0.33	
c : 0.66	u : 0.33	
a : 0.66	c : 0.33	
c : 0.33	u : 0.33	a : 0.33	
c : 0.66	u : 0.33	
c : 0.66	g : 0.33	
a : 1.00	
u : 0.66	a : 0.33	
c : 0.66	u : 0.33	
c : 0.66	u : 0.33	
a : 0.66	u : 0.33	
u : 0.66	c : 0.33	
c : 0.66	u : 0.33	
c : 0.66	a : 0.33	
a : 0.66	u : 0.33	
u : 1.00	
c : 0.66	u : 0.33	
c : 0.66	u : 0.33	
a : 1.00	
u : 1.00	
u : 0.66	c : 0.33	
c : 1.00	
a : 1.00	
u : 1.00	
c : 0.66	g : 0.33	
c : 0.66	a : 0.33	
a : 0.66	g : 0.33	
c : 0.33	u : 0.33	g : 0.33	
c : 0.66	u : 0.33	
c : 0.33	a : 0.33	u : 0.33	
a : 1.00	

#score	1534.3333333333314
#seq	3
#width	269
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF470JIH_PUS1_transcript_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
::::::::EEEEEcccpppppppccc::eeeeemmmmeeeee:bb[ddddmmmmdddd]bb:::::::::::::EEEEEKKGGGGGGG:::::::::dddd####a!!eeeeennnnneeeee22a333dddd:::::eeeeeeeeee!!a!!cccqqqqqqqqccc22a22eeeee333eeeee:::::::::::::::::::::::::::GGGGGGGYYEEEEEEEEEE:::::::::::::	chrM:15094-15340(+)$1	246	2	246	732.0000

#DB
........((((((((.......)))..(((((....))))).((.((((....)))).)).............(((((..(((((((.........((((....(..(((((.....)))))..)...)))).....((((((((((..(..(((........)))..)..)))))...)))))...........................)))))))..)))))))))).............	chrM:15094-15340(+)$1	1	2	246	732.0000

#PSSM
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	

#score	732.0
#seq	1
#width	244
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF844VZT_HNRNPU_transcript_m3_run2.nuc.txt

#NT
AGAGG	chr2:131968000-131968241(+)$1	241	47	52	15.0000
AGAGG	chr19:4457099-4457379(-)$1	280	227	232	15.0000
AGAGG	chr2:170684725-170685006(+)$1	281	24	29	15.0000
AGAGG	chr19:39339506-39339823(-)$1	317	29	34	15.0000
AGAGG	chr3:15091848-15092097(-)$1	249	167	172	15.0000
AGAGG	chr21:39449734-39450003(-)$1	269	146	151	15.0000
AGAGG	chr22:20935036-20935280(+)$1	244	232	237	15.0000
AGAGG	chr9:117134114-117134386(-)$1	272	245	250	15.0000
AGAGG	chr2:99230814-99231101(+)$1	287	153	158	15.0000
AGAGG	chr1:27027374-27027631(+)$1	257	240	245	15.0000
AGAGG	chr2:55203325-55203576(-)$1	251	114	119	15.0000
AGAGG	chr7:127693598-127693903(+)$1	305	60	65	15.0000
agagg	chr7:155505677-155505937(+)$1	260	111	116	15.0000
agagg	chr1:246226685-246226978(-)$1	293	1	6	15.0000
AGAGG	chrX:154012586-154012858(-)$1	272	254	259	15.0000
AGAGG	chr11:2719720-2719949(-)$1	229	35	40	15.0000
AGAGG	chr1:65724913-65725233(+)$1	320	118	123	15.0000
agagg	chr10:35694148-35694418(+)$1	270	117	122	15.0000
AGAGG	chr19:39331336-39331642(-)$1	306	137	142	15.0000
agagg	chr19:28998863-28999131(-)$1	268	36	41	15.0000
AGAGG	chr5:53599770-53600088(-)$1	318	79	84	15.0000
AGAGG	chr6:53191646-53191920(-)$1	274	9	14	15.0000
AGAGG	chr12:125269395-125269637(-)$1	242	52	57	15.0000
AGAGG	chr22:23535111-23535366(+)$1	255	57	62	15.0000
AGAGG	chr17:79544178-79544462(-)$1	284	24	29	15.0000
AGAGG	chr19:55856505-55856763(+)$1	258	127	132	15.0000
AGAGG	chr3:47010484-47010756(-)$1	272	66	71	15.0000
AGAGG	chr20:49191535-49191836(+)$1	301	21	26	15.0000
AGAGG	chr19:4456051-4456299(-)$1	248	14	19	15.0000
agagg	chr6:53199858-53200134(-)$1	276	132	137	15.0000
AGAGG	chr19:39138516-39138810(+)$1	294	203	208	15.0000
AGAGG	chr11:70269725-70269984(+)$1	259	92	97	15.0000
AGAGG	chr11:2710486-2710723(-)$1	237	28	33	15.0000
AGAGG	chr19:41770838-41771107(+)$1	269	184	189	15.0000
AGAGG	chr11:2714340-2714595(-)$1	255	43	48	15.0000
AGAGG	chr17:79544536-79544801(-)$1	265	241	246	15.0000
AGAGG	chr11:991679-991953(+)$1	274	54	59	15.0000
AGAGG	chr19:49843200-49843488(-)$1	288	188	193	15.0000
AGAGG	chr16:89555910-89556145(-)$1	235	108	113	15.0000
agagg	chr7:32561141-32561501(+)$1	360	24	29	15.0000
AGAGG	chr4:10112374-10112634(-)$1	260	65	70	15.0000
AGAGG	chr16:81580656-81580968(+)$1	312	113	118	15.0000
AGAGG	chr1:43398775-43399051(-)$1	276	52	57	15.0000
AGAGG	chr19:28996647-28996911(-)$1	264	40	45	15.0000
AGAGG	chr20:31392139-31392427(+)$1	288	42	47	15.0000
AGAGG	chr6:52227534-52227844(+)$1	310	22	27	15.0000
agagg	chr4:2935989-2936300(-)$1	311	30	35	15.0000
agagg	chr21:45478205-45478477(+)$1	272	57	62	15.0000
AGAGG	chr7:127723516-127723844(+)$1	328	273	278	15.0000
AGAGG	chr17:1465194-1465494(-)$1	300	45	50	15.0000
AGAGG	chr15:69098502-69098825(-)$1	323	230	235	15.0000
AGAGG	chr4:89698601-89698906(-)$1	305	51	56	15.0000
AGAGG	chr2:61763912-61764185(-)$1	273	216	221	15.0000
AGAGG	chr22:42275493-42275740(+)$1	247	122	127	15.0000
agagg	chr21:45478018-45478318(+)$1	300	5	10	15.0000
AGAGG	chr7:127723078-127723354(+)$1	276	143	148	15.0000
agagg	chr15:27368449-27368704(+)$1	255	105	110	15.0000
AGAGG	chr17:46133047-46133317(+)$1	270	22	27	15.0000
AGAGG	chr9:117152378-117152658(-)$1	280	110	115	15.0000

#otherMatches

#Struct PSSM
####d	chr9:117134458-117134715(-)$1	257	168	173	15.0000
ff[bb	chr2:131968000-131968241(+)$1	241	47	52	15.0000
nnndd	chr19:4457099-4457379(-)$1	280	227	232	15.0000
:::::	chr2:170684725-170685006(+)$1	281	24	29	15.0000
IIIIe	chr19:39339506-39339823(-)$1	317	29	34	15.0000
ooodd	chr3:15091848-15092097(-)$1	249	167	172	15.0000
nnnnc	chr21:39449734-39450003(-)$1	269	146	151	15.0000
emmmm	chr22:20935036-20935280(+)$1	244	232	237	15.0000
3eeee	chr9:117134114-117134386(-)$1	272	245	250	15.0000
mmmbb	chr2:99230814-99231101(+)$1	287	153	158	15.0000
hhhhh	chr1:27027374-27027631(+)$1	257	240	245	15.0000
fffff	chr2:55203325-55203576(-)$1	251	114	119	15.0000
:::CC	chr7:127693598-127693903(+)$1	305	60	65	15.0000
^^^^^	chr7:155505677-155505937(+)$1	260	111	116	15.0000
:::::	chr1:246226685-246226978(-)$1	293	1	6	15.0000
?HHHH	chrX:154012586-154012858(-)$1	272	254	259	15.0000
hhhh[	chr11:2719720-2719949(-)$1	229	35	40	15.0000
::::f	chr1:65724913-65725233(+)$1	320	118	123	15.0000
fffee	chr10:35694148-35694418(+)$1	270	117	122	15.0000
IIIII	chr19:39331336-39331642(-)$1	306	137	142	15.0000
:::dd	chr19:28998863-28999131(-)$1	268	36	41	15.0000
c]ccc	chr5:53599770-53600088(-)$1	318	79	84	15.0000
B{CCC	chr6:53191646-53191920(-)$1	274	9	14	15.0000
''eee	chr12:125269395-125269637(-)$1	242	52	57	15.0000
C{A{F	chr22:23535111-23535366(+)$1	255	57	62	15.0000
g::::	chr17:79544178-79544462(-)$1	284	24	29	15.0000
YYDDD	chr19:55856505-55856763(+)$1	258	127	132	15.0000
eeeee	chr3:47010484-47010756(-)$1	272	66	71	15.0000
ccc22	chr20:49191535-49191836(+)$1	301	21	26	15.0000
$$$$g	chr19:4456051-4456299(-)$1	248	14	19	15.0000
GGDDD	chr6:53199858-53200134(-)$1	276	132	137	15.0000
+++++	chr19:39138516-39138810(+)$1	294	203	208	15.0000
ggggb	chr11:70269725-70269984(+)$1	259	92	97	15.0000
mmmma	chr11:2710486-2710723(-)$1	237	28	33	15.0000
qqqqq	chr19:41770838-41771107(+)$1	269	184	189	15.0000
udddd	chr11:2714340-2714595(-)$1	255	43	48	15.0000
g::::	chr17:79544536-79544801(-)$1	265	241	246	15.0000
!ccc!	chr11:991679-991953(+)$1	274	54	59	15.0000
dd]ee	chr19:49843200-49843488(-)$1	288	188	193	15.0000
eeeee	chr16:89555910-89556145(-)$1	235	108	113	15.0000
{DDDD	chr7:32561141-32561501(+)$1	360	24	29	15.0000
DDDKK	chr4:10112374-10112634(-)$1	260	65	70	15.0000
dddee	chr16:81580656-81580968(+)$1	312	113	118	15.0000
qqqqq	chr1:43398775-43399051(-)$1	276	52	57	15.0000
!bb[b	chr19:28996647-28996911(-)$1	264	40	45	15.0000
LLLCC	chr20:31392139-31392427(+)$1	288	42	47	15.0000
:::::	chr6:52227534-52227844(+)$1	310	22	27	15.0000
rra]a	chr4:2935989-2936300(-)$1	311	30	35	15.0000
d]fff	chr21:45478205-45478477(+)$1	272	57	62	15.0000
]dddd	chr7:127723516-127723844(+)$1	328	273	278	15.0000
ooooo	chr17:1465194-1465494(-)$1	300	45	50	15.0000
HHHHH	chr15:69098502-69098825(-)$1	323	230	235	15.0000
EEEEE	chr4:89698601-89698906(-)$1	305	51	56	15.0000
ttttt	chr2:61763912-61764185(-)$1	273	216	221	15.0000
eeeee	chr22:42275493-42275740(+)$1	247	122	127	15.0000
::DDD	chr21:45478018-45478318(+)$1	300	5	10	15.0000
=====	chr7:127723078-127723354(+)$1	276	143	148	15.0000
:dddd	chr15:27368449-27368704(+)$1	255	105	110	15.0000
MMMBB	chr17:46133047-46133317(+)$1	270	22	27	15.0000
"""ii	chr9:117152378-117152658(-)$1	280	110	115	15.0000

#DB
....(	chr9:117134458-117134715(-)$1	1	168	173	15.0000
((.((	chr2:131968000-131968241(+)$1	1	47	52	15.0000
...))	chr19:4457099-4457379(-)$1	1	227	232	15.0000
.....	chr2:170684725-170685006(+)$1	1	24	29	15.0000
(((((	chr19:39339506-39339823(-)$1	1	29	34	15.0000
...))	chr3:15091848-15092097(-)$1	1	167	172	15.0000
....)	chr21:39449734-39450003(-)$1	1	146	151	15.0000
(....	chr22:20935036-20935280(+)$1	1	232	237	15.0000
.))))	chr9:117134114-117134386(-)$1	1	245	250	15.0000
...))	chr2:99230814-99231101(+)$1	1	153	158	15.0000
)))))	chr1:27027374-27027631(+)$1	1	240	245	15.0000
)))))	chr2:55203325-55203576(-)$1	1	114	119	15.0000
...((	chr7:127693598-127693903(+)$1	1	60	65	15.0000
.....	chr7:155505677-155505937(+)$1	1	111	116	15.0000
.....	chr1:246226685-246226978(-)$1	1	1	6	15.0000
.))))	chrX:154012586-154012858(-)$1	1	254	259	15.0000
((((.	chr11:2719720-2719949(-)$1	1	35	40	15.0000
....(	chr1:65724913-65725233(+)$1	1	118	123	15.0000
)))))	chr10:35694148-35694418(+)$1	1	117	122	15.0000
)))))	chr19:39331336-39331642(-)$1	1	137	142	15.0000
...((	chr19:28998863-28999131(-)$1	1	36	41	15.0000
).)))	chr5:53599770-53600088(-)$1	1	79	84	15.0000
(.(((	chr6:53191646-53191920(-)$1	1	9	14	15.0000
..(((	chr12:125269395-125269637(-)$1	1	52	57	15.0000
(.(.(	chr22:23535111-23535366(+)$1	1	57	62	15.0000
)....	chr17:79544178-79544462(-)$1	1	24	29	15.0000
..)))	chr19:55856505-55856763(+)$1	1	127	132	15.0000
(((((	chr3:47010484-47010756(-)$1	1	66	71	15.0000
)))..	chr20:49191535-49191836(+)$1	1	21	26	15.0000
....(	chr19:4456051-4456299(-)$1	1	14	19	15.0000
)))))	chr6:53199858-53200134(-)$1	1	132	137	15.0000
.....	chr19:39138516-39138810(+)$1	1	203	208	15.0000
(((((	chr11:70269725-70269984(+)$1	1	92	97	15.0000
....)	chr11:2710486-2710723(-)$1	1	28	33	15.0000
.....	chr19:41770838-41771107(+)$1	1	184	189	15.0000
.))))	chr11:2714340-2714595(-)$1	1	43	48	15.0000
)....	chr17:79544536-79544801(-)$1	1	241	246	15.0000
.(((.	chr11:991679-991953(+)$1	1	54	59	15.0000
)).))	chr19:49843200-49843488(-)$1	1	188	193	15.0000
)))))	chr16:89555910-89556145(-)$1	1	108	113	15.0000
.((((	chr7:32561141-32561501(+)$1	1	24	29	15.0000
(((..	chr4:10112374-10112634(-)$1	1	65	70	15.0000
)))((	chr16:81580656-81580968(+)$1	1	113	118	15.0000
.....	chr1:43398775-43399051(-)$1	1	52	57	15.0000
.((.(	chr19:28996647-28996911(-)$1	1	40	45	15.0000
...((	chr20:31392139-31392427(+)$1	1	42	47	15.0000
.....	chr6:52227534-52227844(+)$1	1	22	27	15.0000
..).)	chr4:2935989-2936300(-)$1	1	30	35	15.0000
).)))	chr21:45478205-45478477(+)$1	1	57	62	15.0000
.))))	chr7:127723516-127723844(+)$1	1	273	278	15.0000
.....	chr17:1465194-1465494(-)$1	1	45	50	15.0000
)))))	chr15:69098502-69098825(-)$1	1	230	235	15.0000
(((((	chr4:89698601-89698906(-)$1	1	51	56	15.0000
.....	chr2:61763912-61764185(-)$1	1	216	221	15.0000
(((((	chr22:42275493-42275740(+)$1	1	122	127	15.0000
..(((	chr21:45478018-45478318(+)$1	1	5	10	15.0000
)))))	chr7:127723078-127723354(+)$1	1	143	148	15.0000
.((((	chr15:27368449-27368704(+)$1	1	105	110	15.0000
...((	chr17:46133047-46133317(+)$1	1	22	27	15.0000
...((	chr9:117152378-117152658(-)$1	1	110	115	15.0000

#PSSM
A : 0.83	a : 0.16	
G : 0.83	g : 0.16	
A : 0.83	a : 0.16	
G : 0.83	g : 0.16	
G : 0.83	g : 0.16	

#score	900.0000000000001
#seq	60
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_transcript_m2_run1.nuc.txt

#NT
GGCCGGG	chr7:76178770-76179075(+)$1	305	37	44	14.7755
ggcgggg	chr9:116969139-116969392(+)$1	253	173	180	14.6734
AGCUGGG	chr20:3897899-3898126(+)$1	227	172	179	14.3673
Agcuggg	chr20:60938974-60939238(-)$1	264	86	93	14.3673
GGCUGGG	chr2:219265220-219265472(+)$1	252	110	117	17.9387
AGCUGGG	chr20:3898057-3898287(+)$1	230	14	21	14.3673
GGCCGGG	chr3:49058551-49058770(-)$1	219	109	116	14.7755
UGCUGGG	chr7:99691130-99691335(-)$1	205	2	9	14.2653
ugcuggg	chr22:24497739-24497974(+)$1	235	156	163	14.2653
ggcuggg	chr20:17662010-17662255(-)$1	245	169	176	17.9387
GGCUGGG	chr11:2155792-2156042(-)$1	250	103	110	17.9387
GGCUGGG	chr11:567844-568139(-)$1	295	234	241	17.9387
GCCUGGG	chr16:14403415-14403650(+)$1	235	46	53	14.3673
GGCUGGG	chr16:2322127-2322365(+)$1	238	221	228	17.9387
UGCUGGG	chr22:50871110-50871434(+)$1	324	111	118	14.2653
GGCGGGG	chr17:80189119-80189351(+)$1	232	43	50	14.6734
GGCCGGG	chr20:60719044-60719363(+)$1	319	150	157	14.7755
GACUGGG	chr19:2270133-2270422(+)$1	289	16	23	13.9591
GGCAGGG	chr1:16478217-16478486(-)$1	269	241	248	14.2653
GGCUGGG	chr20:31597454-31597695(+)$1	241	197	204	17.9387
GUCUGGG	chr10:120802012-120802296(-)$1	284	80	87	14.1632
GCCUGGG	chr1:3477288-3477543(-)$1	255	72	79	14.3673
GGCUGGG	chr20:62514461-62514718(+)$1	257	226	233	17.9387
GGCUGGG	chr12:58218187-58218440(-)$1	253	224	231	17.9387
GGCUGGG	chr11:2155772-2155992(-)$1	220	53	60	17.9387
GUCUGGG	chr1:205417973-205418230(-)$1	257	132	139	14.1632
ggcuggg	chr17:41622778-41623041(+)$1	263	100	107	17.9387
GGCUGGG	chr20:31597501-31597743(+)$1	242	150	157	17.9387
UGCUGGG	chr9:97847887-97848110(+)$1	223	74	81	14.2653
ggcgggg	chrX:152909650-152909905(+)$1	255	84	91	14.6734
GGCUGGG	chr22:24499988-24500221(+)$1	233	213	220	17.9387
GGCUGGG	chr9:96941531-96941794(+)$1	263	111	118	17.9387
GGCUGGG	chr21:47570463-47570705(-)$1	242	19	26	17.9387
GGCGGGG	chr5:1054180-1054439(-)$1	259	104	111	14.6734
GGCUGGG	chr16:75273468-75273713(-)$1	245	10	17	17.9387
AGCUGGG	chr20:3897945-3898167(+)$1	222	126	133	14.3673
GCCUGGG	chr7:2680353-2680625(+)$1	272	241	248	14.3673
GGCCGGG	chr19:46522260-46522507(+)$1	247	23	30	14.7755
GGCUGGG	chr1:94312708-94313008(+)$1	300	135	142	17.9387
GCCUGGG	chr19:42758777-42759031(-)$1	254	70	77	14.3673
GGCGGGG	chr21:44845978-44846303(-)$1	325	53	60	14.6734
GUCUGGG	chr20:33592580-33592822(-)$1	242	182	189	14.1632
GGCUGGG	chr17:79958905-79959170(+)$1	265	131	138	17.9387
GGCUGGG	chr17:80197785-80198011(+)$1	226	33	40	17.9387
AGCUGGG	chr2:238484643-238484898(-)$1	255	69	76	14.3673
GCCUGGG	chr22:22007449-22007698(+)$1	249	28	35	14.3673
GGCUGGG	chr11:567774-568016(-)$1	242	111	118	17.9387
GGCCGGG	chr16:14401775-14402009(+)$1	234	164	171	14.7755

#otherMatches

#Struct PSSM
bb"""ee	chr17:79962282-79962514(+)$1	232	0	7	14.7755
bb!!ddd	chr7:76178770-76179075(+)$1	305	37	44	14.7755
]bbffff	chr9:116969139-116969392(+)$1	253	173	180	14.6734
dddd]bb	chr20:3897899-3898126(+)$1	227	172	179	14.3673
[bb[ccc	chr20:60938974-60939238(-)$1	264	86	93	14.3673
:::ffff	chr2:219265220-219265472(+)$1	252	110	117	17.9387
fff$$$$	chr20:3898057-3898287(+)$1	230	14	21	14.3673
"gggggg	chr3:49058551-49058770(-)$1	219	109	116	14.7755
:::::ee	chr7:99691130-99691335(-)$1	205	2	9	14.2653
cc22ddd	chr22:24497739-24497974(+)$1	235	156	163	14.2653
gggggll	chr20:17662010-17662255(-)$1	245	169	176	17.9387
eFFFFFF	chr11:2155792-2156042(-)$1	250	103	110	17.9387
hhhhhhh	chr11:567844-568139(-)$1	295	234	241	17.9387
ooooocc	chr16:14403415-14403650(+)$1	235	46	53	14.3673
DDDD:dd	chr16:2322127-2322365(+)$1	238	221	228	17.9387
obbdddd	chr22:50871110-50871434(+)$1	324	111	118	14.2653
ee[eeee	chr17:80189119-80189351(+)$1	232	43	50	14.6734
eeeeeee	chr20:60719044-60719363(+)$1	319	150	157	14.7755
hhhhhhm	chr19:2270133-2270422(+)$1	289	16	23	13.9591
[ccc[cc	chr1:16478217-16478486(-)$1	269	241	248	14.2653
d22eeee	chr20:31597454-31597695(+)$1	241	197	204	17.9387
HHHHHHH	chr10:120802012-120802296(-)$1	284	80	87	14.1632
d]a]fff	chr1:3477288-3477543(-)$1	255	72	79	14.3673
pddddcc	chr20:62514461-62514718(+)$1	257	226	233	17.9387
mmiiiii	chr12:58218187-58218440(-)$1	253	224	231	17.9387
eBBGGGG	chr11:2155772-2155992(-)$1	220	53	60	17.9387
IIIIIII	chr1:205417973-205418230(-)$1	257	132	139	14.1632
JJJJJJJ	chr17:41622778-41623041(+)$1	263	100	107	17.9387
dd]eeee	chr20:31597501-31597743(+)$1	242	150	157	17.9387
:eeeeen	chr9:97847887-97848110(+)$1	223	74	81	14.2653
333ffff	chrX:152909650-152909905(+)$1	255	84	91	14.6734
ffffffo	chr22:24499988-24500221(+)$1	233	213	220	17.9387
fff]hhh	chr9:96941531-96941794(+)$1	263	111	118	17.9387
JJJJJJJ	chr21:47570463-47570705(-)$1	242	19	26	17.9387
eedddd[	chr5:1054180-1054439(-)$1	259	104	111	14.6734
lllffff	chr16:75273468-75273713(-)$1	245	10	17	17.9387
=======	chr20:3897945-3898167(+)$1	222	126	133	14.3673
HHHHHHg	chr7:2680353-2680625(+)$1	272	241	248	14.3673
=======	chr19:46522260-46522507(+)$1	247	23	30	14.7755
fffffgg	chr1:94312708-94313008(+)$1	300	135	142	17.9387
ccc####	chr19:42758777-42759031(-)$1	254	70	77	14.3673
ooooooa	chr21:44845978-44846303(-)$1	325	53	60	14.6734
EEFFFFF	chr20:33592580-33592822(-)$1	242	182	189	14.1632
"dddd[f	chr17:79958905-79959170(+)$1	265	131	138	17.9387
ggggggm	chr17:80197785-80198011(+)$1	226	33	40	17.9387
""a[===	chr2:238484643-238484898(-)$1	255	69	76	14.3673
ee[ccc#	chr22:22007449-22007698(+)$1	249	28	35	14.3673
hhhhhhh	chr11:567774-568016(-)$1	242	111	118	17.9387
hhhhhhh	chr16:14401775-14402009(+)$1	234	164	171	14.7755

#DB
((...((	chr17:79962282-79962514(+)$1	1	0	7	14.7755
((..(((	chr7:76178770-76179075(+)$1	1	37	44	14.7755
.))((((	chr9:116969139-116969392(+)$1	1	173	180	14.6734
)))).))	chr20:3897899-3898126(+)$1	1	172	179	14.3673
.((.(((	chr20:60938974-60939238(-)$1	1	86	93	14.3673
...((((	chr2:219265220-219265472(+)$1	1	110	117	17.9387
(((....	chr20:3898057-3898287(+)$1	1	14	21	14.3673
.((((((	chr3:49058551-49058770(-)$1	1	109	116	14.7755
.....((	chr7:99691130-99691335(-)$1	1	2	9	14.2653
))..)))	chr22:24497739-24497974(+)$1	1	156	163	14.2653
(((((..	chr20:17662010-17662255(-)$1	1	169	176	17.9387
)))))))	chr11:2155792-2156042(-)$1	1	103	110	17.9387
)))))))	chr11:567844-568139(-)$1	1	234	241	17.9387
.....))	chr16:14403415-14403650(+)$1	1	46	53	14.3673
)))).((	chr16:2322127-2322365(+)$1	1	221	228	17.9387
.))))))	chr22:50871110-50871434(+)$1	1	111	118	14.2653
((.((((	chr17:80189119-80189351(+)$1	1	43	50	14.6734
(((((((	chr20:60719044-60719363(+)$1	1	150	157	14.7755
((((((.	chr19:2270133-2270422(+)$1	1	16	23	13.9591
.(((.((	chr1:16478217-16478486(-)$1	1	241	248	14.2653
)..))))	chr20:31597454-31597695(+)$1	1	197	204	17.9387
(((((((	chr10:120802012-120802296(-)$1	1	80	87	14.1632
).).)))	chr1:3477288-3477543(-)$1	1	72	79	14.3673
.))))))	chr20:62514461-62514718(+)$1	1	226	233	17.9387
..)))))	chr12:58218187-58218440(-)$1	1	224	231	17.9387
)((((((	chr11:2155772-2155992(-)$1	1	53	60	17.9387
(((((((	chr1:205417973-205418230(-)$1	1	132	139	14.1632
(((((((	chr17:41622778-41623041(+)$1	1	100	107	17.9387
)).))))	chr20:31597501-31597743(+)$1	1	150	157	17.9387
.(((((.	chr9:97847887-97848110(+)$1	1	74	81	14.2653
...))))	chrX:152909650-152909905(+)$1	1	84	91	14.6734
((((((.	chr22:24499988-24500221(+)$1	1	213	220	17.9387
))).)))	chr9:96941531-96941794(+)$1	1	111	118	17.9387
(((((((	chr21:47570463-47570705(-)$1	1	19	26	17.9387
((((((.	chr5:1054180-1054439(-)$1	1	104	111	14.6734
...))))	chr16:75273468-75273713(-)$1	1	10	17	17.9387
(((((((	chr20:3897945-3898167(+)$1	1	126	133	14.3673
))))))(	chr7:2680353-2680625(+)$1	1	241	248	14.3673
(((((((	chr19:46522260-46522507(+)$1	1	23	30	14.7755
(((((((	chr1:94312708-94313008(+)$1	1	135	142	17.9387
(((....	chr19:42758777-42759031(-)$1	1	70	77	14.3673
......)	chr21:44845978-44846303(-)$1	1	53	60	14.6734
)))))))	chr20:33592580-33592822(-)$1	1	182	189	14.1632
.((((.(	chr17:79958905-79959170(+)$1	1	131	138	17.9387
((((((.	chr17:80197785-80198011(+)$1	1	33	40	17.9387
..(.(((	chr2:238484643-238484898(-)$1	1	69	76	14.3673
((.(((.	chr22:22007449-22007698(+)$1	1	28	35	14.3673
)))))))	chr11:567774-568016(-)$1	1	111	118	17.9387
)))))))	chr16:14401775-14402009(+)$1	1	164	171	14.7755

#PSSM
G : 0.73	A : 0.10	g : 0.08	U : 0.06	u : 0.02	
G : 0.69	g : 0.12	C : 0.10	U : 0.06	A : 0.02	
C : 0.87	c : 0.12	
U : 0.67	C : 0.12	u : 0.08	G : 0.06	g : 0.04	A : 0.02	
G : 0.87	g : 0.12	
G : 0.87	g : 0.12	
G : 0.87	g : 0.12	

#score	774.3061224489802
#seq	49
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_CDS_m3_run2.nuc.txt

#NT
CUGGAGCUGC	chr1:8925414-8925641(-)$1	227	102	112	17.0192
CAGGAGCGGG	chr14:65239433-65239682(-)$1	249	61	71	13.0769
CUGGAGGAGG	chr9:35705938-35706164(-)$1	226	80	90	16.8269
CUGGAGCAGA	chr14:102430992-102431234(+)$1	242	219	229	19.1346
CUGGAGUGGU	chr15:28391284-28391578(-)$1	294	48	58	13.1730
CUGGAGCAGC	chr12:133373092-133373344(-)$1	252	199	209	19.7115
CUGGUGCAGU	chr11:47814310-47814598(-)$1	288	250	260	15.4807
CUGGGGCGGG	chr14:65253711-65253966(-)$1	255	230	240	12.3076
CAGGAGCAGC	chr8:48771317-48771599(-)$1	282	49	59	16.5384
CCGCAGCAGC	chr20:36776257-36776538(-)$1	281	133	143	13.2692
CUGGAGCAAG	chr2:74595865-74596108(-)$1	243	28	38	14.5192
CUGAAGGAGA	chr11:65829129-65829346(+)$1	217	48	58	13.4615
CUGAAGAAGU	chr17:57758177-57758442(+)$1	265	129	139	12.9807
CAGGAGCAGC	chr17:80045001-80045219(-)$1	218	185	195	16.5384
CUGCAGCAGC	chr16:2817268-2817511(+)$1	243	48	58	16.9230
CAGGAGCUGG	chr9:35703461-35703675(-)$1	214	107	117	13.3653
CUGGUGCUGC	chrX:47069275-47069537(+)$1	262	130	140	13.2692
CUGAAGCAGA	chr12:133384785-133385018(-)$1	233	180	190	15.8653
CUGGGGCUGC	chr16:3715875-3716118(-)$1	243	191	201	13.0769
CUGGAGUGGA	chr19:39207625-39207876(+)$1	251	103	113	13.0769
CUGAAGAAGA	chr22:23629247-23629538(+)$1	291	131	141	12.8846
CUGUAGCUGU	chr6:31751943-31752182(-)$1	239	157	167	12.9807
CUGGAGCACU	chr7:2419023-2419247(+)$1	224	110	120	14.5192
CUGGAGCUGU	chr19:10260122-10260382(-)$1	260	149	159	16.5384
CAGGAGGAGC	chr21:47693282-47693575(-)$1	293	124	134	14.1346
CUGGAGCAGG	chr5:140909081-140909307(-)$1	226	159	169	19.2307
CUGGAGCUGC	chr19:59056165-59056396(+)$1	231	133	143	17.0192
CUGCAGCUGU	chr9:139353494-139353740(-)$1	246	174	184	13.7500
CUGGAGAAGC	chr5:140953260-140953515(-)$1	255	221	231	16.7307
CAGGAGGAGC	chr7:128485104-128485343(+)$1	239	214	224	14.1346
CUGCAGGAGG	chr11:62494174-62494538(-)$1	364	6	16	14.0384
CUGGUGAAGG	chr12:120588849-120589065(-)$1	216	17	27	12.5000
CUGGUGCAGA	chr2:48026438-48026686(+)$1	248	100	110	15.3846
CUGCAGCAGU	chr9:134353145-134353395(+)$1	250	21	31	16.4423
CUGGGGCAGG	chr8:48872565-48872804(-)$1	239	229	239	15.2884
CUGGAGGAGC	chr5:138163113-138163376(+)$1	263	144	154	17.3076
CUGGAGCGGG	chr17:7415036-7415276(+)$1	240	123	133	16.2500
CAGGAGGAGG	chr19:59060687-59060913(+)$1	226	7	17	13.6538
CCGGAGGAGC	chr15:43815890-43816133(+)$1	243	55	65	13.6538
CUGGAGGAGU	chrX:153579238-153579465(-)$1	227	155	165	16.8269
CUUGAGCAGA	chr12:6626438-6626693(+)$1	255	58	68	14.5192
CUGCUGCAGG	chr17:7405275-7405528(+)$1	253	209	219	12.6923
AUGGAGCAGU	chr1:19410933-19411184(-)$1	251	86	96	14.4230
CUAGAGCAGU	chr12:6692172-6692379(-)$1	207	58	68	14.7115
CUAGAGCAGC	chr1:220208182-220208425(-)$1	243	29	39	15.1923
CCGGAGCAGA	chr14:102506843-102507076(+)$1	233	121	131	15.4807
cagcagcagc	chr16:9056962-9057217(-)$1	255	84	94	13.7500
CUGCAGCAGA	chr17:78321200-78321446(+)$1	246	97	107	16.3461
CUGGACCAGA	chr17:78307811-78308067(+)$1	256	126	136	14.3269
CUGGAGGUGU	chr1:193051660-193051923(+)$1	263	134	144	14.1346
CUGGAGUGGA	chr8:48874000-48874316(+)$1	316	168	178	13.0769

#otherMatches

#Struct PSSM
E{HHHHHHHH	chr12:49435108-49435365(-)$1	257	5	15	16.9230
======!!cc	chr1:8925414-8925641(-)$1	227	102	112	17.0192
ggbbEEEEED	chr14:65239433-65239682(-)$1	249	61	71	13.0769
eeee22a]ff	chr9:35705938-35706164(-)$1	226	80	90	16.8269
BBEEEEE}DD	chr14:102430992-102431234(+)$1	242	219	229	19.1346
=========:	chr15:28391284-28391578(-)$1	294	48	58	13.1730
ee:::IIIII	chr12:133373092-133373344(-)$1	252	199	209	19.7115
eeJJJJJJJJ	chr11:47814310-47814598(-)$1	288	250	260	15.4807
FFFFFFADDD	chr14:65253711-65253966(-)$1	255	230	240	12.3076
77ggggggg]	chr8:48771317-48771599(-)$1	282	49	59	16.5384
eeee[bb[dd	chr20:36776257-36776538(-)$1	281	133	143	13.2692
IIIIIIIKKB	chr2:74595865-74596108(-)$1	243	28	38	14.5192
bb"""bbqqq	chr11:65829129-65829346(+)$1	217	48	58	13.4615
4=========	chr17:57758177-57758442(+)$1	265	129	139	12.9807
22eeeee:::	chr17:80045001-80045219(-)$1	218	185	195	16.5384
:HHHHHHHH:	chr16:2817268-2817511(+)$1	243	48	58	16.9230
f:::::eeee	chr9:35703461-35703675(-)$1	214	107	117	13.3653
ooohhhhhhh	chrX:47069275-47069537(+)$1	262	130	140	13.2692
JJJ?????CC	chr12:133384785-133385018(-)$1	233	180	190	15.8653
______FFFF	chr16:3715875-3716118(-)$1	243	191	201	13.0769
hhhhh!!a!!	chr19:39207625-39207876(+)$1	251	103	113	13.0769
ddqqqqqqqq	chr22:23629247-23629538(+)$1	291	131	141	12.8846
bb[hhhhhhh	chr6:31751943-31752182(-)$1	239	157	167	12.9807
ddd:::cccm	chr7:2419023-2419247(+)$1	224	110	120	14.5192
22bb:FFFFF	chr19:10260122-10260382(-)$1	260	149	159	16.5384
ddddpppppp	chr21:47693282-47693575(-)$1	293	124	134	14.1346
eeeee::CCC	chr5:140909081-140909307(-)$1	226	159	169	19.2307
66666bb]gg	chr19:59056165-59056396(+)$1	231	133	143	17.0192
eee]eeeee4	chr9:139353494-139353740(-)$1	246	174	184	13.7500
:FFFFFFEEE	chr5:140953260-140953515(-)$1	255	221	231	16.7307
gg]a]bb:::	chr7:128485104-128485343(+)$1	239	214	224	14.1346
EELLLGGGGG	chr11:62494174-62494538(-)$1	364	6	16	14.0384
ggoooooogg	chr12:120588849-120589065(-)$1	216	17	27	12.5000
bb[ddddzzz	chr2:48026438-48026686(+)$1	248	100	110	15.3846
DDDD::::bb	chr9:134353145-134353395(+)$1	250	21	31	16.4423
e]ggggggg:	chr8:48872565-48872804(-)$1	239	229	239	15.2884
ffffffccc]	chr5:138163113-138163376(+)$1	263	144	154	17.3076
cooooooccc	chr17:7415036-7415276(+)$1	240	123	133	16.2500
ddd[ffffff	chr19:59060687-59060913(+)$1	226	7	17	13.6538
HHHHHHHDDD	chr15:43815890-43816133(+)$1	243	55	65	13.6538
cccffffff]	chrX:153579238-153579465(-)$1	227	155	165	16.8269
"""ccc[bbl	chr12:6626438-6626693(+)$1	255	58	68	14.5192
eeeeedddd]	chr17:7405275-7405528(+)$1	253	209	219	12.6923
dbb!!bb[bb	chr1:19410933-19411184(-)$1	251	86	96	14.4230
d::::dddde	chr12:6692172-6692379(-)$1	207	58	68	14.7115
:::eeeee!!	chr1:220208182-220208425(-)$1	243	29	39	15.1923
c]ggggggg]	chr14:102506843-102507076(+)$1	233	121	131	15.4807
B:bb[bbmmm	chr16:9056962-9057217(-)$1	255	84	94	13.7500
ffffff::::	chr17:78321200-78321446(+)$1	246	97	107	16.3461
FFFFF}AYYB	chr17:78307811-78308067(+)$1	256	126	136	14.3269
:ddddmmmmd	chr1:193051660-193051923(+)$1	263	134	144	14.1346
bddddeeeee	chr8:48874000-48874316(+)$1	316	168	178	13.0769

#DB
(.((((((((	chr12:49435108-49435365(-)$1	1	5	15	16.9230
((((((..((	chr1:8925414-8925641(-)$1	1	102	112	17.0192
))))((((((	chr14:65239433-65239682(-)$1	1	61	71	13.0769
))))..).))	chr9:35705938-35706164(-)$1	1	80	90	16.8269
))))))).))	chr14:102430992-102431234(+)$1	1	219	229	19.1346
))))))))).	chr15:28391284-28391578(-)$1	1	48	58	13.1730
))...)))))	chr12:133373092-133373344(-)$1	1	199	209	19.7115
))))))))))	chr11:47814310-47814598(-)$1	1	250	260	15.4807
))))))))))	chr14:65253711-65253966(-)$1	1	230	240	12.3076
..))))))).	chr8:48771317-48771599(-)$1	1	49	59	16.5384
((((.((.((	chr20:36776257-36776538(-)$1	1	133	143	13.2692
(((((((..(	chr2:74595865-74596108(-)$1	1	28	38	14.5192
((...((...	chr11:65829129-65829346(+)$1	1	48	58	13.4615
.)))))))))	chr17:57758177-57758442(+)$1	1	129	139	12.9807
..)))))...	chr17:80045001-80045219(-)$1	1	185	195	16.5384
.((((((((.	chr16:2817268-2817511(+)$1	1	48	58	16.9230
).....((((	chr9:35703461-35703675(-)$1	1	107	117	13.3653
...)))))))	chrX:47069275-47069537(+)$1	1	130	140	13.2692
))).....))	chr12:133384785-133385018(-)$1	1	180	190	15.8653
......))))	chr16:3715875-3716118(-)$1	1	191	201	13.0769
(((((..(..	chr19:39207625-39207876(+)$1	1	103	113	13.0769
((........	chr22:23629247-23629538(+)$1	1	131	141	12.8846
((.(((((((	chr6:31751943-31752182(-)$1	1	157	167	12.9807
)))...(((.	chr7:2419023-2419247(+)$1	1	110	120	14.5192
..)).)))))	chr19:10260122-10260382(-)$1	1	149	159	16.5384
((((......	chr21:47693282-47693575(-)$1	1	124	134	14.1346
)))))..(((	chr5:140909081-140909307(-)$1	1	159	169	19.2307
.....)).))	chr19:59056165-59056396(+)$1	1	133	143	17.0192
))).))))).	chr9:139353494-139353740(-)$1	1	174	184	13.7500
.)))))))))	chr5:140953260-140953515(-)$1	1	221	231	16.7307
)).).))...	chr7:128485104-128485343(+)$1	1	214	224	14.1346
((...(((((	chr11:62494174-62494538(-)$1	1	6	16	14.0384
((......))	chr12:120588849-120589065(-)$1	1	17	27	12.5000
((.((((...	chr2:48026438-48026686(+)$1	1	100	110	15.3846
((((....((	chr9:134353145-134353395(+)$1	1	21	31	16.4423
).))))))).	chr8:48872565-48872804(-)$1	1	229	239	15.2884
))))))))).	chr5:138163113-138163376(+)$1	1	144	154	17.3076
(......)))	chr17:7415036-7415276(+)$1	1	123	133	16.2500
(((.((((((	chr19:59060687-59060913(+)$1	1	7	17	13.6538
((((((((((	chr15:43815890-43816133(+)$1	1	55	65	13.6538
))))))))).	chrX:153579238-153579465(-)$1	1	155	165	16.8269
...(((.((.	chr12:6626438-6626693(+)$1	1	58	68	14.5192
))))))))).	chr17:7405275-7405528(+)$1	1	209	219	12.6923
(((..((.((	chr1:19410933-19411184(-)$1	1	86	96	14.4230
)....(((((	chr12:6692172-6692379(-)$1	1	58	68	14.7115
...(((((..	chr1:220208182-220208425(-)$1	1	29	39	15.1923
).))))))).	chr14:102506843-102507076(+)$1	1	121	131	15.4807
(.((.((...	chr16:9056962-9057217(-)$1	1	84	94	13.7500
))))))....	chr17:78321200-78321446(+)$1	1	97	107	16.3461
))))).)..)	chr17:78307811-78308067(+)$1	1	126	136	14.3269
.((((....)	chr1:193051660-193051923(+)$1	1	134	144	14.1346
))))))))))	chr8:48874000-48874316(+)$1	1	168	178	13.0769

#PSSM
C : 0.96	A : 0.01	c : 0.01	
U : 0.78	A : 0.13	C : 0.05	a : 0.01	
G : 0.92	A : 0.03	U : 0.01	g : 0.01	
G : 0.73	C : 0.15	A : 0.07	U : 0.01	c : 0.01	
A : 0.82	U : 0.09	G : 0.05	a : 0.01	
G : 0.96	g : 0.01	C : 0.01	
C : 0.65	G : 0.19	A : 0.07	U : 0.05	c : 0.01	
A : 0.69	U : 0.17	G : 0.11	a : 0.01	
G : 0.94	A : 0.01	C : 0.01	g : 0.01	
C : 0.30	G : 0.23	U : 0.23	A : 0.21	c : 0.01	

#score	778.4615384615392
#seq	52
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_transcript_m2_run1.nuc.txt

#NT
GGAGGCGGG	chr20:35974127-35974393(+)$1	266	159	168	19.6530
GGAGGUGGG	chr16:30958987-30959239(+)$1	252	105	114	18.9387
GGCGGCGGG	chr2:178128761-178129029(-)$1	268	119	128	16.1836
GGAGGAGGG	chr16:81658643-81658925(+)$1	282	176	185	22.9183
agaggAGGG	chr16:29912180-29912513(+)$1	333	93	102	18.4285
GGAGCAGGG	chr7:5434307-5434627(-)$1	320	246	255	18.2244
GUAGGAGGG	chr16:75285021-75285273(-)$1	252	145	154	18.3265
GGUGGAGGG	chr19:55623310-55623557(-)$1	247	9	18	19.0408
GGAGGAGGG	chr19:13122608-13122885(+)$1	277	141	150	22.9183
ggAGGAGGG	chr6:36164477-36164736(-)$1	259	173	182	22.9183
GGAGGAUGG	chr20:31055866-31056165(-)$1	299	120	129	18.6326
GGAGGAGGG	chr11:844096-844406(+)$1	310	164	173	22.9183
GGAGGAUGG	chr7:5460710-5460980(-)$1	270	98	107	18.6326
ggaggaagg	chr1:17990624-17990906(+)$1	282	85	94	18.7346
GGAGGAGGG	chr1:116916266-116916540(+)$1	274	206	215	22.9183
GGCGGAGGG	chr19:1943818-1944066(+)$1	248	59	68	19.4489
GGAGGAAGG	chr20:17662176-17662387(-)$1	211	119	128	18.7346
ggaggaggg	chr7:101459377-101459650(+)$1	273	107	116	22.9183
GGAGGAGGU	chr20:62330186-62330437(-)$1	251	36	45	18.5306
GGAGGAGGA	chr3:197281813-197282097(-)$1	284	85	94	18.5306
GGAGGCGGG	chr20:35974193-35974455(+)$1	262	93	102	19.6530
GGAGGAGGG	chr19:50181314-50181575(+)$1	261	117	126	22.9183
GCAGGAGGG	chr12:112035292-112035571(-)$1	279	125	134	18.3265
GGAGAAGGG	chr5:109025768-109026094(+)$1	326	254	263	18.2244
GGAGGAGGU	chr17:4269068-4269375(-)$1	307	57	66	18.5306
GGAGGAGGA	chrX:39942858-39943107(-)$1	249	147	156	18.5306
ggaggaggg	chr7:101459284-101459569(+)$1	285	200	209	22.9183
gggggaggg	chr21:47565486-47565738(-)$1	252	16	25	19.3469
GGAGGCGGG	chr9:136759037-136759290(-)$1	253	87	96	19.6530
GGAGGCGGG	chr2:241497441-241497695(-)$1	254	190	199	19.6530
GGAAGAGGG	chr3:88107755-88108014(-)$1	259	169	178	18.2244
ggcGGAGGG	chr21:38739941-38740189(+)$1	248	77	86	19.4489
GGAGGAGGG	chr1:1281623-1281914(-)$1	291	11	20	22.9183
GGAGGAAGG	chr2:232645377-232645652(-)$1	275	70	79	18.7346
ggcggcggg	chr21:44395124-44395390(+)$1	266	66	75	16.1836
UGAGGAGGG	chr20:60934697-60935036(-)$1	339	88	97	18.3265
GGAGGAGUG	chr13:114003962-114004209(-)$1	247	107	116	18.2244
GGCGGAGGG	chr13:99228467-99228722(-)$1	255	122	131	19.4489
GGAGGAGGG	chr14:105892366-105892654(+)$1	288	100	109	22.9183
gggggcggg	chr6:34856966-34857236(+)$1	270	18	27	16.0816
agaggaggg	chr11:47291968-47292244(+)$1	276	17	26	18.4285
ggaggaggg	chr3:100428660-100428952(+)$1	292	34	43	22.9183
GGAGGAGGG	chr1:2333911-2334183(+)$1	272	189	198	22.9183
GGACGAGGG	chr2:172016421-172016732(-)$1	311	145	154	18.2244
GGAGGAGCG	chr17:80190205-80190478(+)$1	273	123	132	18.2244
GGAGGAGGG	chr19:42758465-42758677(-)$1	212	17	26	22.9183
GGGGGCGGG	chr22:50355781-50356018(+)$1	237	99	108	16.0816
gaaggaggg	chr10:13389517-13389802(-)$1	285	33	42	18.3265

#otherMatches

#Struct PSSM
ccc[dddd[	chr4:2258332-2258626(-)$1	294	89	98	19.3469
eea[bb[dd	chr20:35974127-35974393(+)$1	266	159	168	19.6530
eeeee[eee	chr16:30958987-30959239(+)$1	252	105	114	18.9387
DDDD{FFFF	chr2:178128761-178129029(-)$1	268	119	128	16.1836
mmma]ccc]	chr16:81658643-81658925(+)$1	282	176	185	22.9183
::::::::g	chr16:29912180-29912513(+)$1	333	93	102	18.4285
====[dddd	chr7:5434307-5434627(-)$1	320	246	255	18.2244
[a&&&&&&&	chr16:75285021-75285273(-)$1	252	145	154	18.3265
GGGEEEEE:	chr19:55623310-55623557(-)$1	247	9	18	19.0408
]bbgggggg	chr19:13122608-13122885(+)$1	277	141	150	22.9183
bb:HHHHHH	chr6:36164477-36164736(-)$1	259	173	182	22.9183
dd[dddd[a	chr20:31055866-31056165(-)$1	299	120	129	18.6326
mmmeeeee]	chr11:844096-844406(+)$1	310	164	173	22.9183
dd[bb[ccc	chr7:5460710-5460980(-)$1	270	98	107	18.6326
:::::::::	chr1:17990624-17990906(+)$1	282	85	94	18.7346
333bb22ee	chr1:116916266-116916540(+)$1	274	206	215	22.9183
ggggggddd	chr19:1943818-1944066(+)$1	248	59	68	19.4489
gg%%%%%%c	chr20:17662176-17662387(-)$1	211	119	128	18.7346
fbb$$$$$d	chr7:101459377-101459650(+)$1	273	107	116	22.9183
eeee4444d	chr20:62330186-62330437(-)$1	251	36	45	18.5306
EEEEE::::	chr3:197281813-197282097(-)$1	284	85	94	18.5306
eea[bb[dd	chr20:35974193-35974455(+)$1	262	93	102	19.6530
========!	chr19:50181314-50181575(+)$1	261	117	126	22.9183
ooooccc]b	chr12:112035292-112035571(-)$1	279	125	134	18.3265
ddddqqqqq	chr5:109025768-109026094(+)$1	326	254	263	18.2244
GGGGGGGa[	chr17:4269068-4269375(-)$1	307	57	66	18.5306
BBKKDDDD{	chrX:39942858-39943107(-)$1	249	147	156	18.5306
GGGGGGG:d	chr7:101459284-101459569(+)$1	285	200	209	22.9183
A{HHHHHHH	chr21:47565486-47565738(-)$1	252	16	25	19.3469
B{DDDDFFF	chr9:136759037-136759290(-)$1	253	87	96	19.6530
FF}CCC}JJ	chr2:241497441-241497695(-)$1	254	190	199	19.6530
b"""hhhhh	chr3:88107755-88108014(-)$1	259	169	178	18.2244
cccbbccco	chr21:38739941-38740189(+)$1	248	77	86	19.4489
EE:::::::	chr1:1281623-1281914(-)$1	291	11	20	22.9183
tttttttth	chr2:232645377-232645652(-)$1	275	70	79	18.7346
pccc]eeee	chr21:44395124-44395390(+)$1	266	66	75	16.1836
b333bb]a]	chr20:60934697-60935036(-)$1	339	88	97	18.3265
ee22a]ddd	chr13:114003962-114004209(-)$1	247	107	116	18.2244
]ccc]hhhh	chr13:99228467-99228722(-)$1	255	122	131	19.4489
BB}FFFFFF	chr14:105892366-105892654(+)$1	288	100	109	22.9183
d]ddddEEE	chr6:34856966-34857236(+)$1	270	18	27	16.0816
ee[ccc!!h	chr11:47291968-47292244(+)$1	276	17	26	18.4285
E{CCCKKA{	chr3:100428660-100428952(+)$1	292	34	43	22.9183
DDDD}BB}B	chr1:2333911-2334183(+)$1	272	189	198	22.9183
DDDKKGGGG	chr2:172016421-172016732(-)$1	311	145	154	18.2244
FNNNNNJJJ	chr17:80190205-80190478(+)$1	273	123	132	18.2244
eeeee[eee	chr19:42758465-42758677(-)$1	212	17	26	22.9183
FFFFF{EEE	chr22:50355781-50356018(+)$1	237	99	108	16.0816
JJ::::BB{	chr10:13389517-13389802(-)$1	285	33	42	18.3265

#DB
(((.((((.	chr4:2258332-2258626(-)$1	1	89	98	19.3469
(((.((.((	chr20:35974127-35974393(+)$1	1	159	168	19.6530
(((((.(((	chr16:30958987-30959239(+)$1	1	105	114	18.9387
((((.((((	chr2:178128761-178129029(-)$1	1	119	128	16.1836
...).))).	chr16:81658643-81658925(+)$1	1	176	185	22.9183
........(	chr16:29912180-29912513(+)$1	1	93	102	18.4285
((((.((((	chr7:5434307-5434627(-)$1	1	246	255	18.2244
.(.......	chr16:75285021-75285273(-)$1	1	145	154	18.3265
((((((((.	chr19:55623310-55623557(-)$1	1	9	18	19.0408
.))))))))	chr19:13122608-13122885(+)$1	1	141	150	22.9183
)).))))))	chr6:36164477-36164736(-)$1	1	173	182	22.9183
((.((((.(	chr20:31055866-31056165(-)$1	1	120	129	18.6326
...))))).	chr11:844096-844406(+)$1	1	164	173	22.9183
((.((.(((	chr7:5460710-5460980(-)$1	1	98	107	18.6326
.........	chr1:17990624-17990906(+)$1	1	85	94	18.7346
...))..))	chr1:116916266-116916540(+)$1	1	206	215	22.9183
)))))))))	chr19:1943818-1944066(+)$1	1	59	68	19.4489
((......(	chr20:17662176-17662387(-)$1	1	119	128	18.7346
(((.....(	chr7:101459377-101459650(+)$1	1	107	116	22.9183
))))....)	chr20:62330186-62330437(-)$1	1	36	45	18.5306
(((((....	chr3:197281813-197282097(-)$1	1	85	94	18.5306
(((.((.((	chr20:35974193-35974455(+)$1	1	93	102	19.6530
((((((((.	chr19:50181314-50181575(+)$1	1	117	126	22.9183
....))).)	chr12:112035292-112035571(-)$1	1	125	134	18.3265
((((.....	chr5:109025768-109026094(+)$1	1	254	263	18.2244
((((((((.	chr17:4269068-4269375(-)$1	1	57	66	18.5306
((..((((.	chrX:39942858-39943107(-)$1	1	147	156	18.5306
))))))).(	chr7:101459284-101459569(+)$1	1	200	209	22.9183
(.(((((((	chr21:47565486-47565738(-)$1	1	16	25	19.3469
(.(((((((	chr9:136759037-136759290(-)$1	1	87	96	19.6530
)).))).))	chr2:241497441-241497695(-)$1	1	190	199	19.6530
(...(((((	chr3:88107755-88108014(-)$1	1	169	178	18.2244
)))(((((.	chr21:38739941-38740189(+)$1	1	77	86	19.4489
((.......	chr1:1281623-1281914(-)$1	1	11	20	22.9183
........)	chr2:232645377-232645652(-)$1	1	70	79	18.7346
.))).))))	chr21:44395124-44395390(+)$1	1	66	75	16.1836
)...)).).	chr20:60934697-60935036(-)$1	1	88	97	18.3265
))..).)))	chr13:114003962-114004209(-)$1	1	107	116	18.2244
.))).))))	chr13:99228467-99228722(-)$1	1	122	131	19.4489
)).))))))	chr14:105892366-105892654(+)$1	1	100	109	22.9183
).))))(((	chr6:34856966-34857236(+)$1	1	18	27	16.0816
((.(((..(	chr11:47291968-47292244(+)$1	1	17	26	18.4285
(.(((..(.	chr3:100428660-100428952(+)$1	1	34	43	22.9183
)))).)).)	chr1:2333911-2334183(+)$1	1	189	198	22.9183
(((..((((	chr2:172016421-172016732(-)$1	1	145	154	18.2244
(.....(((	chr17:80190205-80190478(+)$1	1	123	132	18.2244
(((((.(((	chr19:42758465-42758677(-)$1	1	17	26	22.9183
(((((.(((	chr22:50355781-50356018(+)$1	1	99	108	16.0816
((....((.	chr10:13389517-13389802(-)$1	1	33	42	18.3265

#PSSM
G : 0.73	g : 0.20	a : 0.04	U : 0.02	
G : 0.71	g : 0.22	U : 0.02	C : 0.02	a : 0.02	
A : 0.65	a : 0.14	C : 0.06	G : 0.04	g : 0.04	c : 0.04	U : 0.02	
G : 0.75	g : 0.20	A : 0.02	C : 0.02	
G : 0.75	g : 0.20	C : 0.02	A : 0.02	
A : 0.67	a : 0.14	C : 0.12	c : 0.04	U : 0.02	
G : 0.73	g : 0.16	U : 0.04	A : 0.04	a : 0.02	
G : 0.77	g : 0.18	U : 0.02	C : 0.02	
G : 0.73	g : 0.18	U : 0.04	A : 0.04	

#score	963.2040816326538
#seq	49
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_UTR_m2_run2.nuc.txt

#NT
ggaggcccgg	chr16:89627208-89627471(+)$1	263	75	85	16.4285
GAUGGCCUGU	chr13:111286844-111287115(+)$1	271	174	184	13.3673
GGUGGGCAGG	chr14:24656251-24656544(-)$1	293	263	273	14.3877
GAUAGCCUGG	chr12:6657223-6657467(-)$1	244	150	160	12.7551
GGAGCGCUGG	chr2:85829093-85829345(-)$1	252	73	83	12.4489
GGUGGGCAGG	chr8:145650434-145650681(-)$1	247	14	24	14.3877
UGUGGCCUGU	chr6:31725785-31726040(+)$1	255	121	131	13.2653
ggcggccUGU	chr16:67143813-67144061(+)$1	248	175	185	15.6122
UGAGGCCUGG	chr11:490952-491193(+)$1	241	120	130	15.3061
GGUGGCCUGC	chr16:89865532-89865800(-)$1	268	240	250	17.3469
GGUGUCCUGG	chr1:9781591-9781927(+)$1	336	141	151	17.3469
GGCGGUCUgg	chr14:35873045-35873353(-)$1	308	131	141	15.4081
GGUGGUCCGG	chr1:44432084-44432361(+)$1	277	11	21	14.1836
GAUGGCCUGC	chr8:17742999-17743287(-)$1	288	100	110	13.1632
GGUGGCCCAG	chr3:9870488-9870746(+)$1	258	57	67	13.6734
GGUGGCUGGG	chr2:220081057-220081346(-)$1	289	20	30	12.8571
GGUUGCAUGG	chr1:8074374-8074637(-)$1	263	33	43	12.6530
GGAGGCCUUG	chr8:145753194-145753440(-)$1	246	218	228	15.5102
GGAGCCCUGG	chr12:6797285-6797551(-)$1	266	167	177	15.9183
GGAGGCCCGG	chr16:2162367-2162626(-)$1	259	38	48	16.4285
GGUGUCCUGU	chr19:50183583-50183859(+)$1	276	159	169	13.7755
GCUGGCCUGG	chr19:45572302-45572565(+)$1	263	118	128	16.8367
GGGGACCUGG	chr8:145690357-145690630(-)$1	273	215	225	15.1020
UGAGGCCUGG	chr16:2313172-2313458(-)$1	286	50	60	15.3061
GGUGGCCUGG	chr3:186502085-186502320(+)$1	235	91	101	21.1224
GGUGGCAUGG	chr7:73107507-73107761(+)$1	254	193	203	16.6326
GGAGGCCUGG	chr12:112130312-112130603(+)$1	291	129	139	19.5918
GGCCGCCUGG	chr9:139838445-139838720(-)$1	275	162	172	15.2040
GGUGGUCUGA	chr3:50099206-50099476(+)$1	270	11	21	13.3673
GGUGUCCUCG	chr19:1438565-1438904(+)$1	339	167	177	13.1632
GGUUACCUGG	chr1:32680256-32680538(-)$1	282	114	124	13.2653
ggcggccugg	chr17:74732489-74732730(-)$1	241	101	111	19.1836
GGUGGGCAGG	chr11:64815123-64815397(-)$1	274	101	111	14.3877
GGAGGCCAGG	chr1:161192786-161193014(-)$1	228	91	101	16.3265
GGAGCCCUGC	chr8:144656950-144657230(-)$1	280	55	65	12.1428
GCUCGCCUGG	chr11:65313921-65314215(-)$1	294	210	220	12.8571
AGGGGCCUGG	chr10:79566556-79566851(-)$1	295	83	93	14.4897
GGCCGCCUGG	chrX:48434084-48434375(+)$1	291	147	157	15.2040
GGUGGCCCUG	chr3:48664370-48664608(-)$1	238	89	99	13.8775
GGUGGCCCUG	chr20:43561544-43561834(+)$1	290	59	69	13.8775
ggcggccUGU	chr16:67143861-67144121(+)$1	260	127	137	15.6122
GGGGGCCUGG	chr6:31750091-31750376(-)$1	285	78	88	18.9795
GGUGGCCUGG	chr18:9614176-9614429(-)$1	253	225	235	21.1224
GGUGGCCUGG	chr3:186502071-186502285(+)$1	214	105	115	21.1224
GGGUGCCUGG	chr19:35500161-35500429(+)$1	268	10	20	15.0000
GGAGCCCAGG	chr17:78180763-78181063(-)$1	300	127	137	12.6530
GGCGGCCUCG	chr19:16630033-16630310(-)$1	277	161	171	15.0000
GGUGGGCUGG	chr17:74084102-74084350(-)$1	248	100	110	17.6530

#otherMatches

#Struct PSSM
IIIIIIQQQQ	chr5:179227484-179227745(-)$1	261	42	52	15.5102
{FFFFFF:gg	chr16:89627208-89627471(+)$1	263	75	85	16.4285
fffff"""a[	chr13:111286844-111287115(+)$1	271	174	184	13.3673
CCCGGGGGGG	chr14:24656251-24656544(-)$1	293	263	273	14.3877
cc]bb333ee	chr12:6657223-6657467(-)$1	244	150	160	12.7551
d::GGGGGGG	chr2:85829093-85829345(-)$1	252	73	83	12.4489
{EEEEEA:DD	chr8:145650434-145650681(-)$1	247	14	24	14.3877
JJ:cccdddd	chr6:31725785-31726040(+)$1	255	121	131	13.2653
a]hhhhhhhh	chr16:67143813-67144061(+)$1	248	175	185	15.6122
]cccGGGGGG	chr11:490952-491193(+)$1	241	120	130	15.3061
44dddd22cc	chr16:89865532-89865800(-)$1	268	240	250	17.3469
bmmmmbb]ee	chr1:9781591-9781927(+)$1	336	141	151	17.3469
gggg]ddddB	chr14:35873045-35873353(-)$1	308	131	141	15.4081
BB{A{IIIII	chr1:44432084-44432361(+)$1	277	11	21	14.1836
eeeeccclll	chr8:17742999-17743287(-)$1	288	100	110	13.1632
fffff!!ddd	chr3:9870488-9870746(+)$1	258	57	67	13.6734
mmmeeeeedd	chr2:220081057-220081346(-)$1	289	20	30	12.8571
pppppiiiii	chr1:8074374-8074637(-)$1	263	33	43	12.6530
IYYCCCZZZE	chr8:145753194-145753440(-)$1	246	218	228	15.5102
dd]ccc22bb	chr12:6797285-6797551(-)$1	266	167	177	15.9183
CC{CCCgggg	chr16:2162367-2162626(-)$1	259	38	48	16.4285
ffffff[ccc	chr19:50183583-50183859(+)$1	276	159	169	13.7755
!!dddda[cc	chr19:45572302-45572565(+)$1	263	118	128	16.8367
eeeee77777	chr8:145690357-145690630(-)$1	273	215	225	15.1020
fhhhhhhhh!	chr16:2313172-2313458(-)$1	286	50	60	15.3061
cc!!ddddnn	chr3:186502085-186502320(+)$1	235	91	101	21.1224
!!ffffffee	chr7:73107507-73107761(+)$1	254	193	203	16.6326
"eeeee[bb!	chr12:112130312-112130603(+)$1	291	129	139	19.5918
CCEEEEE:bb	chr9:139838445-139838720(-)$1	275	162	172	15.2040
bbmmmmbb55	chr3:50099206-50099476(+)$1	270	11	21	13.3673
iiiiii]eee	chr19:1438565-1438904(+)$1	339	167	177	13.1632
bbmmmmbb]f	chr1:32680256-32680538(-)$1	282	114	124	13.2653
cc[ccc[iii	chr17:74732489-74732730(-)$1	241	101	111	19.1836
EEE{A{DDDD	chr11:64815123-64815397(-)$1	274	101	111	14.3877
c::ccc!!bb	chr1:161192786-161193014(-)$1	228	91	101	16.3265
A{DDDDBBA{	chr8:144656950-144657230(-)$1	280	55	65	12.1428
FFFFffffff	chr11:65313921-65314215(-)$1	294	210	220	12.8571
eeeccchhhh	chr10:79566556-79566851(-)$1	295	83	93	14.4897
FFFFFF}DDD	chrX:48434084-48434375(+)$1	291	147	157	15.2040
fffff4444e	chr3:48664370-48664608(-)$1	238	89	99	13.8775
eeeee4444g	chr20:43561544-43561834(+)$1	290	59	69	13.8775
a]hhhhhhhh	chr16:67143861-67144121(+)$1	260	127	137	15.6122
CC{GGGGGGG	chr6:31750091-31750376(-)$1	285	78	88	18.9795
dd:GGGGGGG	chr18:9614176-9614429(-)$1	253	225	235	21.1224
3hhhhhhhh:	chr3:186502071-186502285(+)$1	214	105	115	21.1224
FFFF{EEEEE	chr19:35500161-35500429(+)$1	268	10	20	15.0000
b55555dddd	chr17:78180763-78181063(-)$1	300	127	137	12.6530
mbb]bb]eee	chr19:16630033-16630310(-)$1	277	161	171	15.0000
d]hhhhhhhh	chr17:74084102-74084350(-)$1	248	100	110	17.6530

#DB
((((((....	chr5:179227484-179227745(-)$1	1	42	52	15.5102
.((((((.((	chr16:89627208-89627471(+)$1	1	75	85	16.4285
(((((...(.	chr13:111286844-111287115(+)$1	1	174	184	13.3673
))))))))))	chr14:24656251-24656544(-)$1	1	263	273	14.3877
)).))...))	chr12:6657223-6657467(-)$1	1	150	160	12.7551
)..)))))))	chr2:85829093-85829345(-)$1	1	73	83	12.4489
.((((((.((	chr8:145650434-145650681(-)$1	1	14	24	14.3877
((.(((((((	chr6:31725785-31726040(+)$1	1	121	131	13.2653
).))))))))	chr16:67143813-67144061(+)$1	1	175	185	15.6122
.)))))))))	chr11:490952-491193(+)$1	1	120	130	15.3061
..))))..))	chr16:89865532-89865800(-)$1	1	240	250	17.3469
(....)).))	chr1:9781591-9781927(+)$1	1	141	151	17.3469
)))).)))))	chr14:35873045-35873353(-)$1	1	131	141	15.4081
((.(.(((((	chr1:44432084-44432361(+)$1	1	11	21	14.1836
(((((((...	chr8:17742999-17743287(-)$1	1	100	110	13.1632
(((((..(((	chr3:9870488-9870746(+)$1	1	57	67	13.6734
...)))))))	chr2:220081057-220081346(-)$1	1	20	30	12.8571
.....)))))	chr1:8074374-8074637(-)$1	1	33	43	12.6530
)..)))...)	chr8:145753194-145753440(-)$1	1	218	228	15.5102
)).)))..))	chr12:6797285-6797551(-)$1	1	167	177	15.9183
((.(((((((	chr16:2162367-2162626(-)$1	1	38	48	16.4285
((((((.(((	chr19:50183583-50183859(+)$1	1	159	169	13.7755
..(((((.((	chr19:45572302-45572565(+)$1	1	118	128	16.8367
))))).....	chr8:145690357-145690630(-)$1	1	215	225	15.1020
)((((((((.	chr16:2313172-2313458(-)$1	1	50	60	15.3061
((..((((..	chr3:186502085-186502320(+)$1	1	91	101	21.1224
..((((((((	chr7:73107507-73107761(+)$1	1	193	203	16.6326
.(((((.((.	chr12:112130312-112130603(+)$1	1	129	139	19.5918
))))))).((	chr9:139838445-139838720(-)$1	1	162	172	15.2040
((....))..	chr3:50099206-50099476(+)$1	1	11	21	13.3673
)))))).)))	chr19:1438565-1438904(+)$1	1	167	177	13.1632
((....)).)	chr1:32680256-32680538(-)$1	1	114	124	13.2653
((.(((.(((	chr17:74732489-74732730(-)$1	1	101	111	19.1836
(((.(.((((	chr11:64815123-64815397(-)$1	1	101	111	14.3877
)..(((..((	chr1:161192786-161193014(-)$1	1	91	101	16.3265
(.(((((((.	chr8:144656950-144657230(-)$1	1	55	65	12.1428
))))((((((	chr11:65313921-65314215(-)$1	1	210	220	12.8571
((((((((((	chr10:79566556-79566851(-)$1	1	83	93	14.4897
)))))).)))	chrX:48434084-48434375(+)$1	1	147	157	15.2040
)))))....)	chr3:48664370-48664608(-)$1	1	89	99	13.8775
)))))....)	chr20:43561544-43561834(+)$1	1	59	69	13.8775
).))))))))	chr16:67143861-67144121(+)$1	1	127	137	15.6122
((.(((((((	chr6:31750091-31750376(-)$1	1	78	88	18.9795
)).)))))))	chr18:9614176-9614429(-)$1	1	225	235	21.1224
.)))))))).	chr3:186502071-186502285(+)$1	1	105	115	21.1224
((((.(((((	chr19:35500161-35500429(+)$1	1	10	20	15.0000
).....))))	chr17:78180763-78181063(-)$1	1	127	137	12.6530
.)).)).)))	chr19:16630033-16630310(-)$1	1	161	171	15.0000
).))))))))	chr17:74084102-74084350(-)$1	1	100	110	17.6530

#PSSM
G : 0.83	g : 0.08	U : 0.06	A : 0.02	
G : 0.81	g : 0.08	A : 0.06	C : 0.04	
U : 0.53	A : 0.20	G : 0.10	C : 0.08	c : 0.06	a : 0.02	
G : 0.77	g : 0.08	U : 0.06	C : 0.06	A : 0.02	
G : 0.73	g : 0.08	C : 0.08	U : 0.06	A : 0.04	
C : 0.73	G : 0.12	c : 0.08	U : 0.06	
C : 0.85	c : 0.08	A : 0.04	U : 0.02	
U : 0.73	A : 0.10	C : 0.10	c : 0.02	G : 0.02	u : 0.02	
G : 0.81	g : 0.06	U : 0.06	C : 0.04	A : 0.02	
G : 0.75	U : 0.10	g : 0.06	C : 0.06	A : 0.02	

#score	750.8163265306127
#seq	49
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_UTR_m2_run1.nuc.txt

#NT
acaca	chr17:56405575-56405829(-)$1	254	73	78	15.0000
acaca	chr17:56405812-56406033(-)$1	221	177	182	15.0000
acaca	chr3:9860691-9860934(+)$1	243	25	30	15.0000
acaca	chr21:46915730-46915954(+)$1	224	137	142	15.0000
acaca	chr22:20052484-20052760(+)$1	276	4	9	15.0000
ACACA	chr1:31836952-31837240(+)$1	288	14	19	15.0000
ACACA	chr13:113539199-113539468(+)$1	269	88	93	15.0000
acaca	chr21:46915623-46915876(+)$1	253	12	17	15.0000
ACACA	chr15:75952908-75953231(+)$1	323	32	37	15.0000
ACACA	chr21:46915252-46915511(+)$1	259	218	223	15.0000
acaca	chr1:36031980-36032258(+)$1	278	251	256	15.0000
acaca	chr16:24230968-24231188(+)$1	220	50	55	15.0000
acaca	chr14:102965245-102965508(+)$1	263	57	62	15.0000
acaca	chr21:46915687-46915930(+)$1	243	180	185	15.0000
acaca	chr9:97845457-97845713(+)$1	256	79	84	15.0000
acaca	chr4:1019785-1020112(+)$1	327	11	16	15.0000
ACACA	chr13:31039805-31040050(-)$1	245	220	225	15.0000
acaca	chr9:97845826-97846113(+)$1	287	6	11	15.0000
acaca	chr7:76038623-76038898(+)$1	275	66	71	15.0000
acaca	chr19:41938663-41938958(-)$1	295	144	149	15.0000
acaca	chr16:67209714-67210005(-)$1	291	42	47	15.0000
acaca	chr4:1019067-1019333(+)$1	266	2	7	15.0000
ACACA	chr1:31345060-31345311(-)$1	251	1	6	15.0000
acaca	chr1:206635167-206635408(+)$1	241	48	53	15.0000
acaca	chr21:46915926-46916159(+)$1	233	5	10	15.0000
acaca	chr12:49976589-49976836(+)$1	247	57	62	15.0000
acaca	chr21:46915754-46915969(+)$1	215	113	118	15.0000
acaca	chr13:113539812-113540095(+)$1	283	29	34	15.0000
acaca	chr13:113539357-113539608(+)$1	251	37	42	15.0000
acaca	chr16:4740576-4740827(+)$1	251	30	35	15.0000
acaca	chr22:20052252-20052511(+)$1	259	236	241	15.0000
acaca	chr19:10490190-10490461(-)$1	271	142	147	15.0000
acaca	chr17:56405456-56405775(-)$1	319	19	24	15.0000
acaca	chr16:4740433-4740727(+)$1	294	127	132	15.0000
ACACA	chr21:46915424-46915653(+)$1	229	46	51	15.0000
acaca	chr13:113539705-113539960(+)$1	255	58	63	15.0000
acaca	chr4:1019740-1019985(+)$1	245	56	61	15.0000
ACACA	chr7:128498760-128498993(+)$1	233	84	89	15.0000
ACACA	chr20:37547499-37547810(+)$1	311	22	27	15.0000
acaca	chr14:65232989-65233256(-)$1	267	235	240	15.0000
acaca	chr7:128498605-128498862(+)$1	257	14	19	15.0000
acaca	chr10:103879923-103880153(-)$1	230	10	15	15.0000
acaca	chr21:46915796-46916014(+)$1	218	71	76	15.0000
ACACA	chr16:29677288-29677580(+)$1	292	160	165	15.0000
acaca	chr17:38296550-38296825(+)$1	275	22	27	15.0000
acaca	chr4:1019309-1019558(+)$1	249	20	25	15.0000
acaca	chr12:49976648-49976871(+)$1	223	22	27	15.0000
ACACA	chr21:46915361-46915624(+)$1	263	109	114	15.0000
ACACA	chr9:34635240-34635516(-)$1	276	173	178	15.0000
acaca	chr12:48438402-48438638(-)$1	236	2	7	15.0000
acaca	chr16:24230992-24231227(+)$1	235	2	7	15.0000
acaca	chr3:9860631-9860891(+)$1	260	85	90	15.0000
acaca	chr16:4740527-4740762(+)$1	235	33	38	15.0000
acaca	chr9:97845609-97845852(+)$1	243	13	18	15.0000
acaca	chr1:36032168-36032440(+)$1	272	103	108	15.0000
ACACA	chr13:113539143-113539399(+)$1	256	144	149	15.0000
acaca	chr21:46915676-46915880(+)$1	204	191	196	15.0000
acaca	chr7:128498476-128498724(+)$1	248	143	148	15.0000
acaca	chr9:97845689-97845935(+)$1	246	10	15	15.0000

#otherMatches

#Struct PSSM
:::::	chr17:56405388-56405656(-)$1	268	43	48	15.0000
c^^^^	chr17:56405575-56405829(-)$1	254	73	78	15.0000
:::::	chr17:56405812-56406033(-)$1	221	177	182	15.0000
dddmm	chr3:9860691-9860934(+)$1	243	25	30	15.0000
mmmcc	chr21:46915730-46915954(+)$1	224	137	142	15.0000
{DDDD	chr22:20052484-20052760(+)$1	276	4	9	15.0000
:::::	chr1:31836952-31837240(+)$1	288	14	19	15.0000
==+++	chr13:113539199-113539468(+)$1	269	88	93	15.0000
:::::	chr21:46915623-46915876(+)$1	253	12	17	15.0000
ff"""	chr15:75952908-75953231(+)$1	323	32	37	15.0000
:::::	chr21:46915252-46915511(+)$1	259	218	223	15.0000
:::::	chr1:36031980-36032258(+)$1	278	251	256	15.0000
:ccc[	chr16:24230968-24231188(+)$1	220	50	55	15.0000
NNNNN	chr14:102965245-102965508(+)$1	263	57	62	15.0000
mmmcc	chr21:46915687-46915930(+)$1	243	180	185	15.0000
:::::	chr9:97845457-97845713(+)$1	256	79	84	15.0000
:::::	chr4:1019785-1020112(+)$1	327	11	16	15.0000
77777	chr13:31039805-31040050(-)$1	245	220	225	15.0000
^^^^^	chr9:97845826-97846113(+)$1	287	6	11	15.0000
c22bb	chr7:76038623-76038898(+)$1	275	66	71	15.0000
%%%bb	chr19:41938663-41938958(-)$1	295	144	149	15.0000
:::::	chr16:67209714-67210005(-)$1	291	42	47	15.0000
B{CCC	chr4:1019067-1019333(+)$1	266	2	7	15.0000
:::::	chr1:31345060-31345311(-)$1	251	1	6	15.0000
:::::	chr1:206635167-206635408(+)$1	241	48	53	15.0000
:::::	chr21:46915926-46916159(+)$1	233	5	10	15.0000
::ccc	chr12:49976589-49976836(+)$1	247	57	62	15.0000
eyyyy	chr21:46915754-46915969(+)$1	215	113	118	15.0000
DDD::	chr13:113539812-113540095(+)$1	283	29	34	15.0000
777ee	chr13:113539357-113539608(+)$1	251	37	42	15.0000
::::d	chr16:4740576-4740827(+)$1	251	30	35	15.0000
eeee[	chr22:20052252-20052511(+)$1	259	236	241	15.0000
hhhhh	chr19:10490190-10490461(-)$1	271	142	147	15.0000
c^^^^	chr17:56405456-56405775(-)$1	319	19	24	15.0000
:::::	chr16:4740433-4740727(+)$1	294	127	132	15.0000
gqqqq	chr21:46915424-46915653(+)$1	229	46	51	15.0000
ppppp	chr13:113539705-113539960(+)$1	255	58	63	15.0000
:::::	chr4:1019740-1019985(+)$1	245	56	61	15.0000
gggg:	chr7:128498760-128498993(+)$1	233	84	89	15.0000
:FFFF	chr20:37547499-37547810(+)$1	311	22	27	15.0000
yyydd	chr14:65232989-65233256(-)$1	267	235	240	15.0000
:::::	chr7:128498605-128498862(+)$1	257	14	19	15.0000
ooooo	chr10:103879923-103880153(-)$1	230	10	15	15.0000
mmmcc	chr21:46915796-46916014(+)$1	218	71	76	15.0000
$$$$c	chr16:29677288-29677580(+)$1	292	160	165	15.0000
:::::	chr17:38296550-38296825(+)$1	275	22	27	15.0000
qqqqf	chr4:1019309-1019558(+)$1	249	20	25	15.0000
^^^^^	chr12:49976648-49976871(+)$1	223	22	27	15.0000
:::::	chr21:46915361-46915624(+)$1	263	109	114	15.0000
xxxxx	chr9:34635240-34635516(-)$1	276	173	178	15.0000
:::::	chr12:48438402-48438638(-)$1	236	2	7	15.0000
:::::	chr16:24230992-24231227(+)$1	235	2	7	15.0000
dddmm	chr3:9860631-9860891(+)$1	260	85	90	15.0000
:::::	chr16:4740527-4740762(+)$1	235	33	38	15.0000
:::::	chr9:97845609-97845852(+)$1	243	13	18	15.0000
^^^^^	chr1:36032168-36032440(+)$1	272	103	108	15.0000
####d	chr13:113539143-113539399(+)$1	256	144	149	15.0000
EE:::	chr21:46915676-46915880(+)$1	204	191	196	15.0000
:::::	chr7:128498476-128498724(+)$1	248	143	148	15.0000
ppppp	chr9:97845689-97845935(+)$1	246	10	15	15.0000

#DB
.....	chr17:56405388-56405656(-)$1	1	43	48	15.0000
(....	chr17:56405575-56405829(-)$1	1	73	78	15.0000
.....	chr17:56405812-56406033(-)$1	1	177	182	15.0000
(((..	chr3:9860691-9860934(+)$1	1	25	30	15.0000
...))	chr21:46915730-46915954(+)$1	1	137	142	15.0000
.((((	chr22:20052484-20052760(+)$1	1	4	9	15.0000
.....	chr1:31836952-31837240(+)$1	1	14	19	15.0000
((...	chr13:113539199-113539468(+)$1	1	88	93	15.0000
.....	chr21:46915623-46915876(+)$1	1	12	17	15.0000
((...	chr15:75952908-75953231(+)$1	1	32	37	15.0000
.....	chr21:46915252-46915511(+)$1	1	218	223	15.0000
.....	chr1:36031980-36032258(+)$1	1	251	256	15.0000
.(((.	chr16:24230968-24231188(+)$1	1	50	55	15.0000
.....	chr14:102965245-102965508(+)$1	1	57	62	15.0000
...))	chr21:46915687-46915930(+)$1	1	180	185	15.0000
.....	chr9:97845457-97845713(+)$1	1	79	84	15.0000
.....	chr4:1019785-1020112(+)$1	1	11	16	15.0000
.....	chr13:31039805-31040050(-)$1	1	220	225	15.0000
.....	chr9:97845826-97846113(+)$1	1	6	11	15.0000
)..))	chr7:76038623-76038898(+)$1	1	66	71	15.0000
...((	chr19:41938663-41938958(-)$1	1	144	149	15.0000
.....	chr16:67209714-67210005(-)$1	1	42	47	15.0000
(.(((	chr4:1019067-1019333(+)$1	1	2	7	15.0000
.....	chr1:31345060-31345311(-)$1	1	1	6	15.0000
.....	chr1:206635167-206635408(+)$1	1	48	53	15.0000
.....	chr21:46915926-46916159(+)$1	1	5	10	15.0000
..(((	chr12:49976589-49976836(+)$1	1	57	62	15.0000
(....	chr21:46915754-46915969(+)$1	1	113	118	15.0000
(((..	chr13:113539812-113540095(+)$1	1	29	34	15.0000
...))	chr13:113539357-113539608(+)$1	1	37	42	15.0000
....(	chr16:4740576-4740827(+)$1	1	30	35	15.0000
((((.	chr22:20052252-20052511(+)$1	1	236	241	15.0000
(((((	chr19:10490190-10490461(-)$1	1	142	147	15.0000
(....	chr17:56405456-56405775(-)$1	1	19	24	15.0000
.....	chr16:4740433-4740727(+)$1	1	127	132	15.0000
(....	chr21:46915424-46915653(+)$1	1	46	51	15.0000
.....	chr13:113539705-113539960(+)$1	1	58	63	15.0000
.....	chr4:1019740-1019985(+)$1	1	56	61	15.0000
)))).	chr7:128498760-128498993(+)$1	1	84	89	15.0000
.((((	chr20:37547499-37547810(+)$1	1	22	27	15.0000
...))	chr14:65232989-65233256(-)$1	1	235	240	15.0000
.....	chr7:128498605-128498862(+)$1	1	14	19	15.0000
.....	chr10:103879923-103880153(-)$1	1	10	15	15.0000
...))	chr21:46915796-46916014(+)$1	1	71	76	15.0000
....(	chr16:29677288-29677580(+)$1	1	160	165	15.0000
.....	chr17:38296550-38296825(+)$1	1	22	27	15.0000
....)	chr4:1019309-1019558(+)$1	1	20	25	15.0000
.....	chr12:49976648-49976871(+)$1	1	22	27	15.0000
.....	chr21:46915361-46915624(+)$1	1	109	114	15.0000
.....	chr9:34635240-34635516(-)$1	1	173	178	15.0000
.....	chr12:48438402-48438638(-)$1	1	2	7	15.0000
.....	chr16:24230992-24231227(+)$1	1	2	7	15.0000
(((..	chr3:9860631-9860891(+)$1	1	85	90	15.0000
.....	chr16:4740527-4740762(+)$1	1	33	38	15.0000
.....	chr9:97845609-97845852(+)$1	1	13	18	15.0000
.....	chr1:36032168-36032440(+)$1	1	103	108	15.0000
....(	chr13:113539143-113539399(+)$1	1	144	149	15.0000
))...	chr21:46915676-46915880(+)$1	1	191	196	15.0000
.....	chr7:128498476-128498724(+)$1	1	143	148	15.0000
.....	chr9:97845689-97845935(+)$1	1	10	15	15.0000

#PSSM
a : 0.76	A : 0.23	
c : 0.76	C : 0.23	
a : 0.76	A : 0.23	
c : 0.76	C : 0.23	
a : 0.76	A : 0.23	

#score	900.0000000000001
#seq	60
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF121XLA_HNRNPA1_transcript_m2_run1.nuc.txt

#NT
ACUUUCUUU	chr17:53361182-53361438(+)$1	256	81	90	12.2000
UUGUUCUGU	chr8:121816283-121816587(-)$1	304	289	298	12.2000
UUACUCUUU	chr12:103248128-103248389(-)$1	261	178	187	13.2000
guauucuuu	chr12:9234979-9235258(-)$1	279	85	94	12.6000
UUUUUCUUA	chrX:132992328-132992595(-)$1	267	180	189	14.5000
UUUUUCAGU	chr6:158982574-158982804(+)$1	230	14	23	11.3000
AAUUUCUUU	chr2:198284105-198284401(-)$1	296	18	27	12.2000
UUUUUAUUU	chr11:64542457-64542759(-)$1	302	94	103	15.0000
GUUUUCUUU	chr12:103246728-103246956(-)$1	228	203	212	15.6000
UUAUUCUUU	chr14:23793866-23794079(+)$1	213	94	103	16.2000
UACUUCUUU	chrX:133034328-133034621(-)$1	293	211	220	13.4000
GUUGUCUUU	chr11:65193108-65193327(+)$1	219	119	128	12.7000
UCUUGCUUU	chrX:153628368-153628637(+)$1	269	158	167	11.9000
UUUUUCUCU	chr11:65266546-65266775(+)$1	229	42	51	15.0000
UUGGUCUUU	chrX:70767303-70767583(+)$1	280	189	198	13.1000
UUAUUCUUU	chr3:171860334-171860630(+)$1	296	13	22	16.2000
UACUUCUUU	chr21:46195716-46195925(-)$1	209	22	31	13.4000
uuugucuuc	chr12:9233944-9234207(-)$1	263	12	21	11.6000
GUCUUCUUU	chr7:26230121-26230402(-)$1	281	227	236	12.8000
UCUUUCCUU	chr14:89668320-89668593(-)$1	273	224	233	12.0000
uuuuucuuu	chr17:64214169-64214471(-)$1	302	152	161	19.2000
UUUGACUUU	chrX:133018795-133019062(-)$1	267	143	152	12.1000
UACUUCUUU	chr21:46195725-46195929(-)$1	204	26	35	13.4000
ucuuucuuu	chr11:2719371-2719609(-)$1	238	175	184	16.2000
UUUUUCUGU	chr11:65272424-65272644(+)$1	220	76	85	15.4000
GCUUUCUUU	chrX:133006916-133007217(-)$1	301	202	211	12.6000
UUCUUCUUU	chr17:41608560-41608814(-)$1	254	166	175	16.4000
UUUAUCAUU	chr20:42088156-42088431(+)$1	275	210	219	12.0000
UUUUUCUGU	chr11:65272445-65272652(+)$1	207	55	64	15.4000
UCUUUCUUU	chr2:11721588-11721850(+)$1	262	213	222	16.2000
uuuauauuu	chrX:133082985-133083239(-)$1	254	95	104	11.9000
UUUUUCUUU	chrX:133038621-133038915(-)$1	294	4	13	19.2000
UGUUUCGUU	chr11:65270568-65270801(+)$1	233	2	11	11.5000
UUUCUCUUU	chrX:132979447-132979702(-)$1	255	224	233	16.2000
UUUAUCCUU	chr11:65269113-65269334(+)$1	221	37	46	11.9000
UUUAUCUAU	chr8:121822230-121822512(-)$1	282	49	58	11.9000
UUCCUCUUU	chr11:2698198-2698486(-)$1	288	0	9	13.4000
UUUUGCUUU	chr11:65192493-65192770(+)$1	277	202	211	14.9000
UUUCUCUUU	chrX:132979402-132979647(-)$1	245	169	178	16.2000
UAUUUCUUU	chrX:132954608-132954905(-)$1	297	271	280	16.2000
uuuuuuuuu	chr16:50585423-50585679(+)$1	256	209	218	15.1000
GUUGUCUUU	chr11:65193101-65193308(+)$1	207	126	135	12.7000
UUGUUGUUU	chr12:53435280-53435522(+)$1	242	7	16	11.7000
UACUUCUUU	chr21:46195684-46195916(-)$1	232	13	22	13.4000
uuUUACUUU	chrX:133042499-133042756(-)$1	257	193	202	15.0000
UGUUUUUUU	chr3:171777675-171777972(+)$1	297	210	219	11.7000
UUUUUUUUU	chr11:65271594-65271816(+)$1	222	185	194	15.1000
UUAUucauu	chr20:30269788-30270054(-)$1	266	91	100	12.1000
UUUGACUUU	chr11:2702699-2702958(-)$1	259	223	232	12.1000

#otherMatches

#Struct PSSM
:::::::::	chr19:57346153-57346415(-)$1	262	2	11	12.4000
fffff::::	chr17:53361182-53361438(+)$1	256	81	90	12.2000
]dddd]ccc	chr8:121816283-121816587(-)$1	304	289	298	12.2000
GGGGGG::c	chr12:103248128-103248389(-)$1	261	178	187	13.2000
E::::::::	chr12:9234979-9235258(-)$1	279	85	94	12.6000
IIIIIII??	chrX:132992328-132992595(-)$1	267	180	189	14.5000
FFNNNNNEE	chr6:158982574-158982804(+)$1	230	14	23	11.3000
:::::::::	chr2:198284105-198284401(-)$1	296	18	27	12.2000
oooeeeee:	chr11:64542457-64542759(-)$1	302	94	103	15.0000
GGGGGGGYY	chr12:103246728-103246956(-)$1	228	203	212	15.6000
ppppdddd:	chr14:23793866-23794079(+)$1	213	94	103	16.2000
"""cccooo	chrX:133034328-133034621(-)$1	293	211	220	13.4000
nnccc22ff	chr11:65193108-65193327(+)$1	219	119	128	12.7000
NNNNCCCMM	chrX:153628368-153628637(+)$1	269	158	167	11.9000
JJJJJJJJc	chr11:65266546-65266775(+)$1	229	42	51	15.0000
YDDDD::cc	chrX:70767303-70767583(+)$1	280	189	198	13.1000
FFFFFFFFF	chr3:171860334-171860630(+)$1	296	13	22	16.2000
c::::::::	chr21:46195716-46195925(-)$1	209	22	31	13.4000
dddd####a	chr12:9233944-9234207(-)$1	263	12	21	11.6000
dd333ffff	chr7:26230121-26230402(-)$1	281	227	236	12.8000
llldddd]b	chr14:89668320-89668593(-)$1	273	224	233	12.0000
ffff::::I	chr17:64214169-64214471(-)$1	302	152	161	19.2000
"""dddd""	chrX:133018795-133019062(-)$1	267	143	152	12.1000
c]ccc9999	chr21:46195725-46195929(-)$1	204	26	35	13.4000
###ffffff	chr11:2719371-2719609(-)$1	238	175	184	16.2000
=========	chr11:65272424-65272644(+)$1	220	76	85	15.4000
bhhhhhhhh	chrX:133006916-133007217(-)$1	301	202	211	12.6000
FFFFEEEEE	chr17:41608560-41608814(-)$1	254	166	175	16.4000
FFFFBB}DD	chr20:42088156-42088431(+)$1	275	210	219	12.0000
d:::dddd!	chr11:65272445-65272652(+)$1	207	55	64	15.4000
IIIEEEEE}	chr2:11721588-11721850(+)$1	262	213	222	16.2000
ffffnnnnn	chrX:133082985-133083239(-)$1	254	95	104	11.9000
:::::::::	chrX:133038621-133038915(-)$1	294	4	13	19.2000
:EEEEE:ee	chr11:65270568-65270801(+)$1	233	2	11	11.5000
HHHHHHHHZ	chrX:132979447-132979702(-)$1	255	224	233	16.2000
dddd!!bb[	chr11:65269113-65269334(+)$1	221	37	46	11.9000
FFKKBB{JJ	chr8:121822230-121822512(-)$1	282	49	58	11.9000
:DDDDhhhh	chr11:2698198-2698486(-)$1	288	0	9	13.4000
fff::dddd	chr11:65192493-65192770(+)$1	277	202	211	14.9000
ffffff:cc	chrX:132979402-132979647(-)$1	245	169	178	16.2000
:::::::::	chrX:132954608-132954905(-)$1	297	271	280	16.2000
=========	chr16:50585423-50585679(+)$1	256	209	218	15.1000
nnccc22ff	chr11:65193101-65193308(+)$1	207	126	135	12.7000
:::======	chr12:53435280-53435522(+)$1	242	7	16	11.7000
FFFFFFKKH	chr21:46195684-46195916(-)$1	232	13	22	13.4000
ooooobb55	chrX:133042499-133042756(-)$1	257	193	202	15.0000
:::::::::	chr3:171777675-171777972(+)$1	297	210	219	11.7000
uuuuuuuuu	chr11:65271594-65271816(+)$1	222	185	194	15.1000
^^^^^^^^^	chr20:30269788-30270054(-)$1	266	91	100	12.1000
HHHH}DDDD	chr11:2702699-2702958(-)$1	259	223	232	12.1000

#DB
.........	chr19:57346153-57346415(-)$1	1	2	11	12.4000
)))))....	chr17:53361182-53361438(+)$1	1	81	90	12.2000
.)))).)))	chr8:121816283-121816587(-)$1	1	289	298	12.2000
))))))..(	chr12:103248128-103248389(-)$1	1	178	187	13.2000
)........	chr12:9234979-9235258(-)$1	1	85	94	12.6000
)))))))..	chrX:132992328-132992595(-)$1	1	180	189	14.5000
((.....((	chr6:158982574-158982804(+)$1	1	14	23	11.3000
.........	chr2:198284105-198284401(-)$1	1	18	27	12.2000
...))))).	chr11:64542457-64542759(-)$1	1	94	103	15.0000
)))))))..	chr12:103246728-103246956(-)$1	1	203	212	15.6000
....)))).	chr14:23793866-23794079(+)$1	1	94	103	16.2000
...(((...	chrX:133034328-133034621(-)$1	1	211	220	13.4000
..)))..))	chr11:65193108-65193327(+)$1	1	119	128	12.7000
....(((..	chrX:153628368-153628637(+)$1	1	158	167	11.9000
(((((((((	chr11:65266546-65266775(+)$1	1	42	51	15.0000
.))))..((	chrX:70767303-70767583(+)$1	1	189	198	13.1000
(((((((((	chr3:171860334-171860630(+)$1	1	13	22	16.2000
)........	chr21:46195716-46195925(-)$1	1	22	31	13.4000
((((....(	chr12:9233944-9234207(-)$1	1	12	21	11.6000
))...))))	chr7:26230121-26230402(-)$1	1	227	236	12.8000
...)))).)	chr14:89668320-89668593(-)$1	1	224	233	12.0000
))))....)	chr17:64214169-64214471(-)$1	1	152	161	19.2000
...((((..	chrX:133018795-133019062(-)$1	1	143	152	12.1000
).)))....	chr21:46195725-46195929(-)$1	1	26	35	13.4000
...((((((	chr11:2719371-2719609(-)$1	1	175	184	16.2000
)))))))))	chr11:65272424-65272644(+)$1	1	76	85	15.4000
)))))))))	chrX:133006916-133007217(-)$1	1	202	211	12.6000
)))))))))	chr17:41608560-41608814(-)$1	1	166	175	16.4000
)))))).))	chr20:42088156-42088431(+)$1	1	210	219	12.0000
)...((((.	chr11:65272445-65272652(+)$1	1	55	64	15.4000
)))))))).	chr2:11721588-11721850(+)$1	1	213	222	16.2000
((((.....	chrX:133082985-133083239(-)$1	1	95	104	11.9000
.........	chrX:133038621-133038915(-)$1	1	4	13	19.2000
.(((((.((	chr11:65270568-65270801(+)$1	1	2	11	11.5000
)))))))).	chrX:132979447-132979702(-)$1	1	224	233	16.2000
((((..((.	chr11:65269113-65269334(+)$1	1	37	46	11.9000
((..((.((	chr8:121822230-121822512(-)$1	1	49	58	11.9000
.((((((((	chr11:2698198-2698486(-)$1	1	0	9	13.4000
)))..((((	chr11:65192493-65192770(+)$1	1	202	211	14.9000
)))))).((	chrX:132979402-132979647(-)$1	1	169	178	16.2000
.........	chrX:132954608-132954905(-)$1	1	271	280	16.2000
(((((((((	chr16:50585423-50585679(+)$1	1	209	218	15.1000
..)))..))	chr11:65193101-65193308(+)$1	1	126	135	12.7000
...((((((	chr12:53435280-53435522(+)$1	1	7	16	11.7000
((((((..(	chr21:46195684-46195916(-)$1	1	13	22	13.4000
.....))..	chrX:133042499-133042756(-)$1	1	193	202	15.0000
.........	chr3:171777675-171777972(+)$1	1	210	219	11.7000
.........	chr11:65271594-65271816(+)$1	1	185	194	15.1000
.........	chr20:30269788-30270054(-)$1	1	91	100	12.1000
)))).))))	chr11:2702699-2702958(-)$1	1	223	232	12.1000

#PSSM
U : 0.72	u : 0.12	G : 0.10	A : 0.04	g : 0.02	
U : 0.60	u : 0.12	A : 0.12	C : 0.10	G : 0.04	c : 0.02	
U : 0.60	C : 0.14	u : 0.10	A : 0.08	G : 0.06	a : 0.02	
U : 0.62	C : 0.10	G : 0.10	u : 0.08	A : 0.06	g : 0.02	a : 0.02	
U : 0.76	u : 0.14	A : 0.06	G : 0.04	
C : 0.78	c : 0.10	U : 0.04	A : 0.02	a : 0.02	u : 0.02	G : 0.02	
U : 0.76	u : 0.12	A : 0.04	C : 0.04	G : 0.02	a : 0.02	
U : 0.72	u : 0.14	G : 0.10	C : 0.02	A : 0.02	
U : 0.84	u : 0.12	A : 0.02	c : 0.02	

#score	690.6000000000008
#seq	50
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_UTR_m2_run1.nuc.txt

#NT
CCAggcc	chr14:53162292-53162577(-)$1	285	35	42	13.4626
CCCGGCC	chr20:60718832-60719109(+)$1	277	66	73	17.4179
CCGGGCC	chr10:98346487-98346776(-)$1	289	57	64	13.6865
CUCGGCC	chr11:2152347-2152557(-)$1	210	41	48	13.5373
CCCGGUC	chr2:220408150-220408414(-)$1	264	77	84	13.1641
cccggcc	chr2:236403051-236403335(+)$1	284	83	90	17.4179
CCCUGCC	chr9:117052246-117052491(+)$1	245	179	186	13.1641
ccgggcc	chr2:54197742-54198040(-)$1	298	179	186	13.6865
cccggcc	chr16:75032856-75033164(+)$1	308	291	298	17.4179
CCGGGCC	chr10:98346576-98346890(-)$1	314	171	178	13.6865
cccggcc	chr20:57466548-57466895(+)$1	347	127	134	17.4179
gccggcc	chr6:170123811-170124179(-)$1	368	3	10	13.0149
CCAGGCC	chr3:184040252-184040524(+)$1	272	130	137	13.4626
cccggcg	chr19:1941104-1941385(+)$1	281	7	14	12.8656
CCCGGAC	chr16:46918504-46918752(+)$1	248	163	170	13.0895
CCCAGCC	chr6:41514174-41514529(+)$1	355	43	50	13.1641
CCCGGCG	chr14:31676409-31676703(-)$1	294	211	218	12.8656
CCCGGCC	chr2:11484261-11484599(-)$1	338	243	250	17.4179
CCCGGUC	chr2:220408233-220408513(-)$1	280	176	183	13.1641
CCCGGCU	chr2:161349864-161350143(-)$1	279	119	126	12.8656
CCCGUCC	chr17:43163775-43164096(+)$1	321	229	236	12.6417
CUCGGCC	chr11:2152462-2152671(-)$1	209	155	162	13.5373
CCUGGCc	chr19:18717373-18717707(-)$1	334	144	151	13.3880
CCCGGCC	chr1:16482276-16482659(-)$1	383	5	12	17.4179
CCCGGGC	chr12:121416352-121416650(+)$1	298	187	194	13.3880
CUCGGCC	chr11:2152375-2152607(-)$1	232	91	98	13.5373
cccggcc	chr8:144815732-144816019(-)$1	287	174	181	17.4179
UCCGGCC	chr12:110719011-110719319(+)$1	308	219	226	13.1641
cccggcc	chr16:447677-447940(+)$1	263	140	147	17.4179
GCCGGCC	chr22:29279647-29279951(+)$1	304	49	56	13.0149
cccggcc	chr19:1652274-1652550(-)$1	276	55	62	17.4179
CUCGGCC	chr11:2152419-2152629(-)$1	210	113	120	13.5373
UCCGGCC	chr13:107220115-107220391(-)$1	276	22	29	13.1641
CCCUGCC	chr9:117052403-117052629(+)$1	226	22	29	13.1641
CCCGGCC	chr15:90328470-90328821(-)$1	351	261	268	17.4179
cccggcc	chr19:1941219-1941511(+)$1	292	218	225	17.4179
CCCGGGC	chr10:88854294-88854545(-)$1	251	53	60	13.3880
UCCGGCC	chr1:11986184-11986567(-)$1	383	4	11	13.1641
CGCGGCC	chr16:70719802-70720060(-)$1	258	9	16	13.1641
CCGGGCC	chr12:110719325-110719614(+)$1	289	253	260	13.6865
CUCGGCC	chr11:2152439-2152648(-)$1	209	132	139	13.5373
CCCGGCC	chr19:14201101-14201392(-)$1	291	171	178	17.4179
CACGGCC	chr11:2152143-2152356(-)$1	213	20	27	13.2388
cccggcc	chr16:9057069-9057340(-)$1	271	157	164	17.4179
CCCGGCC	chr18:55711510-55711805(+)$1	295	75	82	17.4179
CCGGGCC	chr11:27493753-27494029(-)$1	276	183	190	13.6865
CUCGGCC	chrX:152913282-152913587(+)$1	305	45	52	13.5373
CCCGGCC	chr14:102975704-102975968(-)$1	264	74	81	17.4179
CCGGGCC	chr22:20104956-20105275(+)$1	319	237	244	13.6865
CCCCGCC	chr8:126010697-126010976(+)$1	279	4	11	13.3134
UCCGGCC	chr16:88851342-88851698(-)$1	356	81	88	13.1641
CCCAGCC	chr4:3519732-3520014(-)$1	282	60	67	13.1641
cccggcc	chrX:152953545-152953898(+)$1	353	20	27	17.4179
CCUGGCC	chr12:131356993-131357253(+)$1	260	4	11	13.3880
CCCGGGC	chr17:16945976-16946284(+)$1	308	3	10	13.3880
cccgggc	chr9:137218243-137218568(+)$1	325	148	155	13.3880
CACGGCC	chr11:2152156-2152386(-)$1	230	50	57	13.2388
ccccgcc	chr6:163835949-163836179(+)$1	230	206	213	13.3134
CCCGGGC	chr16:28222924-28223205(-)$1	281	58	65	13.3880
CCCGGCU	chr16:89346260-89346556(-)$1	296	196	203	12.8656
CCCGACC	chr17:48943258-48943624(-)$1	366	123	130	12.6417
CCCGGCC	chr1:150947009-150947328(-)$1	319	208	215	17.4179
CCAGGCC	chr16:87902809-87903179(-)$1	370	127	134	13.4626
CCCCGCC	chr10:105614882-105615357(-)$1	475	0	7	13.3134
CCCGGCC	chr12:862395-862660(+)$1	265	24	31	17.4179
CCCGGCC	chr19:50016430-50016714(+)$1	284	134	141	17.4179

#otherMatches

#Struct PSSM
[afffff	chr6:32945944-32946196(+)$1	252	114	121	13.3134
gg!!ccc	chr14:53162292-53162577(-)$1	285	35	42	13.4626
dffffff	chr20:60718832-60719109(+)$1	277	66	73	17.4179
ddd]ccc	chr10:98346487-98346776(-)$1	289	57	64	13.6865
cccdddd	chr11:2152347-2152557(-)$1	210	41	48	13.5373
=======	chr2:220408150-220408414(-)$1	264	77	84	13.1641
gggcccb	chr2:236403051-236403335(+)$1	284	83	90	17.4179
cdddd33	chr9:117052246-117052491(+)$1	245	179	186	13.1641
cc]cccc	chr2:54197742-54198040(-)$1	298	179	186	13.6865
HHHYYDD	chr16:75032856-75033164(+)$1	308	291	298	17.4179
ddd:EEE	chr10:98346576-98346890(-)$1	314	171	178	13.6865
ee[ccco	chr20:57466548-57466895(+)$1	347	127	134	17.4179
dmmmmdd	chr6:170123811-170124179(-)$1	368	3	10	13.0149
CCBB{EE	chr3:184040252-184040524(+)$1	272	130	137	13.4626
####ggg	chr19:1941104-1941385(+)$1	281	7	14	12.8656
cgggggg	chr16:46918504-46918752(+)$1	248	163	170	13.0895
B{FFFFF	chr6:41514174-41514529(+)$1	355	43	50	13.1641
bb]dddd	chr14:31676409-31676703(-)$1	294	211	218	12.8656
GGACCC}	chr2:11484261-11484599(-)$1	338	243	250	17.4179
ggggg22	chr2:220408233-220408513(-)$1	280	176	183	13.1641
:eeeee[	chr2:161349864-161350143(-)$1	279	119	126	12.8656
rrreeee	chr17:43163775-43164096(+)$1	321	229	236	12.6417
mmmccc:	chr11:2152462-2152671(-)$1	209	155	162	13.5373
}GGGGGG	chr19:18717373-18717707(-)$1	334	144	151	13.3880
EEEEHHH	chr1:16482276-16482659(-)$1	383	5	12	17.4179
ccc22ii	chr12:121416352-121416650(+)$1	298	187	194	13.3880
mmmccc:	chr11:2152375-2152607(-)$1	232	91	98	13.5373
eeee[cc	chr8:144815732-144816019(-)$1	287	174	181	17.4179
{CCCddd	chr12:110719011-110719319(+)$1	308	219	226	13.1641
DDD}EEE	chr16:447677-447940(+)$1	263	140	147	17.4179
]addddF	chr22:29279647-29279951(+)$1	304	49	56	13.0149
cccbb]d	chr19:1652274-1652550(-)$1	276	55	62	17.4179
B:::bb[	chr11:2152419-2152629(-)$1	210	113	120	13.5373
DDDDDLL	chr13:107220115-107220391(-)$1	276	22	29	13.1641
aeeeee!	chr9:117052403-117052629(+)$1	226	22	29	13.1641
fffcccb	chr15:90328470-90328821(-)$1	351	261	268	17.4179
bb]ffff	chr19:1941219-1941511(+)$1	292	218	225	17.4179
hhheeee	chr10:88854294-88854545(-)$1	251	53	60	13.3880
EE{DDDD	chr1:11986184-11986567(-)$1	383	4	11	13.1641
ggggggd	chr16:70719802-70720060(-)$1	258	9	16	13.1641
EEYYFFF	chr12:110719325-110719614(+)$1	289	253	260	13.6865
mmmccc:	chr11:2152439-2152648(-)$1	209	132	139	13.5373
hhhhhhh	chr19:14201101-14201392(-)$1	291	171	178	17.4179
GGcccll	chr11:2152143-2152356(-)$1	213	20	27	13.2388
eeeeeee	chr16:9057069-9057340(-)$1	271	157	164	17.4179
ccc22cc	chr18:55711510-55711805(+)$1	295	75	82	17.4179
b!!eeee	chr11:27493753-27494029(-)$1	276	183	190	13.6865
FFFFFFC	chrX:152913282-152913587(+)$1	305	45	52	13.5373
:::dddd	chr14:102975704-102975968(-)$1	264	74	81	17.4179
ee!!eee	chr22:20104956-20105275(+)$1	319	237	244	13.6865
EEKKDDD	chr8:126010697-126010976(+)$1	279	4	11	13.3134
ccc]ddd	chr16:88851342-88851698(-)$1	356	81	88	13.1641
DIIIIII	chr4:3519732-3520014(-)$1	282	60	67	13.1641
KKDDDD{	chrX:152953545-152953898(+)$1	353	20	27	17.4179
EEE:ccc	chr12:131356993-131357253(+)$1	260	4	11	13.3880
hhhhh[e	chr17:16945976-16946284(+)$1	308	3	10	13.3880
EEEEE{D	chr9:137218243-137218568(+)$1	325	148	155	13.3880
::cccll	chr11:2152156-2152386(-)$1	230	50	57	13.2388
ddd]ccc	chr6:163835949-163836179(+)$1	230	206	213	13.3134
BBEEEEE	chr16:28222924-28223205(-)$1	281	58	65	13.3880
IIEEEEE	chr16:89346260-89346556(-)$1	296	196	203	12.8656
GGGG{AD	chr17:48943258-48943624(-)$1	366	123	130	12.6417
FFBBDDD	chr1:150947009-150947328(-)$1	319	208	215	17.4179
BB{DDDD	chr16:87902809-87903179(-)$1	370	127	134	13.4626
CCCeeee	chr10:105614882-105615357(-)$1	475	0	7	13.3134
C{DDDD{	chr12:862395-862660(+)$1	265	24	31	17.4179
"""gggg	chr19:50016430-50016714(+)$1	284	134	141	17.4179

#DB
.((((((	chr6:32945944-32946196(+)$1	1	114	121	13.3134
((..(((	chr14:53162292-53162577(-)$1	1	35	42	13.4626
(((((((	chr20:60718832-60719109(+)$1	1	66	73	17.4179
))).)))	chr10:98346487-98346776(-)$1	1	57	64	13.6865
(((((((	chr11:2152347-2152557(-)$1	1	41	48	13.5373
(((((((	chr2:220408150-220408414(-)$1	1	77	84	13.1641
)))((((	chr2:236403051-236403335(+)$1	1	83	90	17.4179
)))))..	chr9:117052246-117052491(+)$1	1	179	186	13.1641
)).))))	chr2:54197742-54198040(-)$1	1	179	186	13.6865
)))..))	chr16:75032856-75033164(+)$1	1	291	298	17.4179
))).)))	chr10:98346576-98346890(-)$1	1	171	178	13.6865
((.(((.	chr20:57466548-57466895(+)$1	1	127	134	17.4179
(....))	chr6:170123811-170124179(-)$1	1	3	10	13.0149
((((.((	chr3:184040252-184040524(+)$1	1	130	137	13.4626
....(((	chr19:1941104-1941385(+)$1	1	7	14	12.8656
)))))))	chr16:46918504-46918752(+)$1	1	163	170	13.0895
(.(((((	chr6:41514174-41514529(+)$1	1	43	50	13.1641
)).))))	chr14:31676409-31676703(-)$1	1	211	218	12.8656
)))))).	chr2:11484261-11484599(-)$1	1	243	250	17.4179
)))))..	chr2:220408233-220408513(-)$1	1	176	183	13.1641
.(((((.	chr2:161349864-161350143(-)$1	1	119	126	12.8656
...))))	chr17:43163775-43164096(+)$1	1	229	236	12.6417
...))).	chr11:2152462-2152671(-)$1	1	155	162	13.5373
.))))))	chr19:18717373-18717707(-)$1	1	144	151	13.3880
(((((((	chr1:16482276-16482659(-)$1	1	5	12	17.4179
)))..))	chr12:121416352-121416650(+)$1	1	187	194	13.3880
...))).	chr11:2152375-2152607(-)$1	1	91	98	13.5373
((((.((	chr8:144815732-144816019(-)$1	1	174	181	17.4179
.((((((	chr12:110719011-110719319(+)$1	1	219	226	13.1641
))).)))	chr16:447677-447940(+)$1	1	140	147	17.4179
.)))))(	chr22:29279647-29279951(+)$1	1	49	56	13.0149
))))).)	chr19:1652274-1652550(-)$1	1	55	62	17.4179
(...((.	chr11:2152419-2152629(-)$1	1	113	120	13.5373
(((((..	chr13:107220115-107220391(-)$1	1	22	29	13.1641
((((((.	chr9:117052403-117052629(+)$1	1	22	29	13.1641
)))((((	chr15:90328470-90328821(-)$1	1	261	268	17.4179
)).))))	chr19:1941219-1941511(+)$1	1	218	225	17.4179
(((((((	chr10:88854294-88854545(-)$1	1	53	60	13.3880
((.((((	chr1:11986184-11986567(-)$1	1	4	11	13.1641
(((((((	chr16:70719802-70720060(-)$1	1	9	16	13.1641
))..)))	chr12:110719325-110719614(+)$1	1	253	260	13.6865
...))).	chr11:2152439-2152648(-)$1	1	132	139	13.5373
)))))))	chr19:14201101-14201392(-)$1	1	171	178	17.4179
(((((..	chr11:2152143-2152356(-)$1	1	20	27	13.2388
))(((((	chr16:9057069-9057340(-)$1	1	157	164	17.4179
)))..))	chr18:55711510-55711805(+)$1	1	75	82	17.4179
(..((((	chr11:27493753-27494029(-)$1	1	183	190	13.6865
(((((((	chrX:152913282-152913587(+)$1	1	45	52	13.5373
...((((	chr14:102975704-102975968(-)$1	1	74	81	17.4179
((..(((	chr22:20104956-20105275(+)$1	1	237	244	13.6865
((..(((	chr8:126010697-126010976(+)$1	1	4	11	13.3134
))).)))	chr16:88851342-88851698(-)$1	1	81	88	13.1641
(((((((	chr4:3519732-3520014(-)$1	1	60	67	13.1641
..((((.	chrX:152953545-152953898(+)$1	1	20	27	17.4179
(((.(((	chr12:131356993-131357253(+)$1	1	4	11	13.3880
(((((.(	chr17:16945976-16946284(+)$1	1	3	10	13.3880
(((((.(	chr9:137218243-137218568(+)$1	1	148	155	13.3880
..(((..	chr11:2152156-2152386(-)$1	1	50	57	13.2388
))).)))	chr6:163835949-163836179(+)$1	1	206	213	13.3134
(((((((	chr16:28222924-28223205(-)$1	1	58	65	13.3880
(((((((	chr16:89346260-89346556(-)$1	1	196	203	12.8656
((((.((	chr17:48943258-48943624(-)$1	1	123	130	12.6417
)))))))	chr1:150947009-150947328(-)$1	1	208	215	17.4179
((.((((	chr16:87902809-87903179(-)$1	1	127	134	13.4626
(((((((	chr10:105614882-105615357(-)$1	1	0	7	13.3134
(.((((.	chr12:862395-862660(+)$1	1	24	31	17.4179
...((((	chr19:50016430-50016714(+)$1	1	134	141	17.4179

#PSSM
C : 0.71	c : 0.19	U : 0.05	g : 0.01	G : 0.01	
C : 0.65	c : 0.20	U : 0.08	A : 0.02	G : 0.01	
C : 0.64	c : 0.19	G : 0.07	A : 0.04	U : 0.02	g : 0.01	
G : 0.67	g : 0.20	C : 0.04	U : 0.02	A : 0.02	c : 0.01	
G : 0.74	g : 0.22	U : 0.01	A : 0.01	
C : 0.67	c : 0.20	G : 0.05	U : 0.02	A : 0.01	g : 0.01	
C : 0.71	c : 0.22	U : 0.02	g : 0.01	G : 0.01	

#score	968.7910447761196
#seq	67
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF844VZT_HNRNPU_transcript_m1_run1.nuc.txt

#NT
UGGGG	chr10:126787783-126788061(-)$1	278	7	12	14.9999
ugggg	chr22:42275774-42276028(+)$1	254	197	202	14.9999
UGGGG	chr17:1465194-1465494(-)$1	300	115	120	14.9999
UGGGG	chr16:67206056-67206310(+)$1	254	48	53	14.9999
UGGGG	chr15:66909153-66909435(+)$1	282	1	6	14.9999
UGGGG	chr22:20935036-20935280(+)$1	244	197	202	14.9999
UGGGG	chr20:49191535-49191836(+)$1	301	205	210	14.9999
UGGGG	chr11:992110-992382(+)$1	272	102	107	14.9999
ugggg	chr15:66906666-66906940(+)$1	274	23	28	14.9999
UGGGG	chr9:117134458-117134715(-)$1	257	45	50	14.9999
UGGGG	chr7:100027469-100027794(+)$1	325	291	296	14.9999
UGGGG	chr5:176856342-176856637(+)$1	295	110	115	14.9999
UGGGG	chr17:79544178-79544462(-)$1	284	139	144	14.9999
UGGGG	chr19:4456051-4456299(-)$1	248	78	83	14.9999
UGGGG	chr1:44698741-44699015(-)$1	274	63	68	14.9999
UGGGG	chr15:64753587-64753871(+)$1	284	161	166	14.9999
UGGGG	chr10:72509038-72509270(+)$1	232	7	12	14.9999
ugggg	chr7:155505677-155505937(+)$1	260	72	77	14.9999
UGGGG	chr15:88228888-88229204(-)$1	316	13	18	14.9999
UGGGG	chr1:43398775-43399051(-)$1	276	156	161	14.9999
UGGGG	chr11:2687827-2688113(-)$1	286	148	153	14.9999
UGGGG	chr9:123154846-123155163(-)$1	317	22	27	14.9999
UGGGG	chr19:4457099-4457379(-)$1	280	132	137	14.9999
UGGGG	chr11:991679-991953(+)$1	274	23	28	14.9999
UGGGG	chr16:89555910-89556145(-)$1	235	18	23	14.9999
UGGGG	chr2:145270226-145270503(-)$1	277	30	35	14.9999
UGGGG	chr2:97557696-97557932(-)$1	236	24	29	14.9999
UGGGG	chr20:31159564-31159845(-)$1	281	2	7	14.9999
UGGGG	chr4:99849526-99849815(-)$1	289	80	85	14.9999
UGGGG	chr16:23870397-23870688(+)$1	291	234	239	14.9999
UGGGG	chr16:1427580-1427882(-)$1	302	92	97	14.9999
UGGGG	chr3:47010484-47010756(-)$1	272	52	57	14.9999
UGGGG	chr15:69098502-69098825(-)$1	323	0	5	14.9999
ugggg	chr12:132401671-132401931(+)$1	260	12	17	14.9999
UGGGG	chr19:49843200-49843488(-)$1	288	68	73	14.9999
UGGGG	chr1:27027374-27027631(+)$1	257	8	13	14.9999
UGGGG	chr6:52227054-52227332(+)$1	278	104	109	14.9999
UGGGG	chr15:67466196-67466490(+)$1	294	81	86	14.9999
UGGGG	chr12:121684599-121684942(-)$1	343	29	34	14.9999
UGGGG	chr22:23535111-23535366(+)$1	255	224	229	14.9999
UGGGG	chr11:66135523-66135814(-)$1	291	33	38	14.9999
UGGGG	chr17:46133047-46133317(+)$1	270	106	111	14.9999
UGGGG	chr19:55856505-55856763(+)$1	258	134	139	14.9999
UGGGG	chr19:34874574-34874845(+)$1	271	36	41	14.9999
UGGGG	chrX:41194443-41194687(+)$1	244	50	55	14.9999
UGGGG	chr11:70269725-70269984(+)$1	259	102	107	14.9999
UGGGG	chr12:125269395-125269637(-)$1	242	4	9	14.9999
ugggg	chr7:32561141-32561501(+)$1	360	135	140	14.9999
UGGGG	chr9:117152378-117152658(-)$1	280	94	99	14.9999
UGGGG	chr6:52227534-52227844(+)$1	310	211	216	14.9999
ugggg	chr2:131968000-131968241(+)$1	241	12	17	14.9999
UGGGG	chr22:19493466-19493737(+)$1	271	7	12	14.9999
UGGGG	chr19:34877534-34877743(+)$1	209	12	17	14.9999
UGGGG	chr6:53199858-53200134(-)$1	276	24	29	14.9999
ugggg	chr11:126140156-126140473(+)$1	317	234	239	14.9999
ugggg	chr15:27368449-27368704(+)$1	255	36	41	14.9999
UGGGG	chr2:170684725-170685006(+)$1	281	5	10	14.9999
UGGGG	chr16:81580656-81580968(+)$1	312	107	112	14.9999
UGGGG	chr12:122620618-122620917(+)$1	299	178	183	14.9999
UGGGG	chr12:109124206-109124496(-)$1	290	15	20	14.9999
UGGGG	chr6:52226995-52227254(+)$1	259	163	168	14.9999
ugggg	chr21:45478018-45478318(+)$1	300	28	33	14.9999
UGGGG	chr4:10108936-10109214(-)$1	278	15	20	14.9999
UGGGG	chr1:44465393-44465686(-)$1	293	96	101	14.9999
UGGGG	chr12:54806254-54806533(-)$1	279	102	107	14.9999

#otherMatches

#Struct PSSM
{CCCK	chr19:34877711-34877979(+)$1	268	28	33	14.9999
FFFFF	chr10:126787783-126788061(-)$1	278	7	12	14.9999
cc:JJ	chr22:42275774-42276028(+)$1	254	197	202	14.9999
B}DDD	chr17:1465194-1465494(-)$1	300	115	120	14.9999
a!!dd	chr16:67206056-67206310(+)$1	254	48	53	14.9999
DDD{B	chr15:66909153-66909435(+)$1	282	1	6	14.9999
ffff]	chr22:20935036-20935280(+)$1	244	197	202	14.9999
f"""c	chr20:49191535-49191836(+)$1	301	205	210	14.9999
g!!ee	chr11:992110-992382(+)$1	272	102	107	14.9999
:eeee	chr15:66906666-66906940(+)$1	274	23	28	14.9999
[dddd	chr9:117134458-117134715(-)$1	257	45	50	14.9999
=DDDD	chr7:100027469-100027794(+)$1	325	291	296	14.9999
[ffff	chr5:176856342-176856637(+)$1	295	110	115	14.9999
c5555	chr17:79544178-79544462(-)$1	284	139	144	14.9999
FF{A{	chr19:4456051-4456299(-)$1	248	78	83	14.9999
e[ddd	chr1:44698741-44699015(-)$1	274	63	68	14.9999
ppppp	chr15:64753587-64753871(+)$1	284	161	166	14.9999
Eeeee	chr10:72509038-72509270(+)$1	232	7	12	14.9999
rrrrr	chr7:155505677-155505937(+)$1	260	72	77	14.9999
BBNNN	chr15:88228888-88229204(-)$1	316	13	18	14.9999
[a[a[	chr1:43398775-43399051(-)$1	276	156	161	14.9999
!dddd	chr11:2687827-2688113(-)$1	286	148	153	14.9999
Ihhhh	chr9:123154846-123155163(-)$1	317	22	27	14.9999
egggg	chr19:4457099-4457379(-)$1	280	132	137	14.9999
hhhhh	chr11:991679-991953(+)$1	274	23	28	14.9999
lllgg	chr16:89555910-89556145(-)$1	235	18	23	14.9999
b[bb[	chr2:145270226-145270503(-)$1	277	30	35	14.9999
hhhhh	chr2:97557696-97557932(-)$1	236	24	29	14.9999
EEEBB	chr20:31159564-31159845(-)$1	281	2	7	14.9999
hhhhh	chr4:99849526-99849815(-)$1	289	80	85	14.9999
FFFFF	chr16:23870397-23870688(+)$1	291	234	239	14.9999
dgggg	chr16:1427580-1427882(-)$1	302	92	97	14.9999
[dddd	chr3:47010484-47010756(-)$1	272	52	57	14.9999
:CCCD	chr15:69098502-69098825(-)$1	323	0	5	14.9999
a[a[d	chr12:132401671-132401931(+)$1	260	12	17	14.9999
ggggc	chr19:49843200-49843488(-)$1	288	68	73	14.9999
!!eee	chr1:27027374-27027631(+)$1	257	8	13	14.9999
c22bb	chr6:52227054-52227332(+)$1	278	104	109	14.9999
JJJJJ	chr15:67466196-67466490(+)$1	294	81	86	14.9999
:FFFF	chr12:121684599-121684942(-)$1	343	29	34	14.9999
HHHHH	chr22:23535111-23535366(+)$1	255	224	229	14.9999
hhh''	chr11:66135523-66135814(-)$1	291	33	38	14.9999
:DDDD	chr17:46133047-46133317(+)$1	270	106	111	14.9999
CCYYJ	chr19:55856505-55856763(+)$1	258	134	139	14.9999
DDDSS	chr19:34874574-34874845(+)$1	271	36	41	14.9999
===ff	chrX:41194443-41194687(+)$1	244	50	55	14.9999
fffff	chr11:70269725-70269984(+)$1	259	102	107	14.9999
::BBK	chr12:125269395-125269637(-)$1	242	4	9	14.9999
ceeee	chr7:32561141-32561501(+)$1	360	135	140	14.9999
ggg""	chr9:117152378-117152658(-)$1	280	94	99	14.9999
ddd[d	chr6:52227534-52227844(+)$1	310	211	216	14.9999
OCCCc	chr2:131968000-131968241(+)$1	241	12	17	14.9999
GGFFF	chr22:19493466-19493737(+)$1	271	7	12	14.9999
fffff	chr19:34877534-34877743(+)$1	209	12	17	14.9999
JJJJJ	chr6:53199858-53200134(-)$1	276	24	29	14.9999
ddddd	chr11:126140156-126140473(+)$1	317	234	239	14.9999
CEEEE	chr15:27368449-27368704(+)$1	255	36	41	14.9999
:::::	chr2:170684725-170685006(+)$1	281	5	10	14.9999
ddlll	chr16:81580656-81580968(+)$1	312	107	112	14.9999
[ffff	chr12:122620618-122620917(+)$1	299	178	183	14.9999
dEEEE	chr12:109124206-109124496(-)$1	290	15	20	14.9999
c22bb	chr6:52226995-52227254(+)$1	259	163	168	14.9999
A{CCC	chr21:45478018-45478318(+)$1	300	28	33	14.9999
sssss	chr4:10108936-10109214(-)$1	278	15	20	14.9999
2ffff	chr1:44465393-44465686(-)$1	293	96	101	14.9999
cDDDD	chr12:54806254-54806533(-)$1	279	102	107	14.9999

#DB
.(((.	chr19:34877711-34877979(+)$1	1	28	33	14.9999
(((((	chr10:126787783-126788061(-)$1	1	7	12	14.9999
)).))	chr22:42275774-42276028(+)$1	1	197	202	14.9999
).)))	chr17:1465194-1465494(-)$1	1	115	120	14.9999
(..((	chr16:67206056-67206310(+)$1	1	48	53	14.9999
(((.(	chr15:66909153-66909435(+)$1	1	1	6	14.9999
)))).	chr22:20935036-20935280(+)$1	1	197	202	14.9999
(...(	chr20:49191535-49191836(+)$1	1	205	210	14.9999
(..((	chr11:992110-992382(+)$1	1	102	107	14.9999
.((((	chr15:66906666-66906940(+)$1	1	23	28	14.9999
.((((	chr9:117134458-117134715(-)$1	1	45	50	14.9999
)))))	chr7:100027469-100027794(+)$1	1	291	296	14.9999
.((((	chr5:176856342-176856637(+)$1	1	110	115	14.9999
)....	chr17:79544178-79544462(-)$1	1	139	144	14.9999
((.(.	chr19:4456051-4456299(-)$1	1	78	83	14.9999
(.(((	chr1:44698741-44699015(-)$1	1	63	68	14.9999
.....	chr15:64753587-64753871(+)$1	1	161	166	14.9999
(((((	chr10:72509038-72509270(+)$1	1	7	12	14.9999
.....	chr7:155505677-155505937(+)$1	1	72	77	14.9999
((...	chr15:88228888-88229204(-)$1	1	13	18	14.9999
.(.(.	chr1:43398775-43399051(-)$1	1	156	161	14.9999
.((((	chr11:2687827-2688113(-)$1	1	148	153	14.9999
(((((	chr9:123154846-123155163(-)$1	1	22	27	14.9999
)((((	chr19:4457099-4457379(-)$1	1	132	137	14.9999
)))))	chr11:991679-991953(+)$1	1	23	28	14.9999
...))	chr16:89555910-89556145(-)$1	1	18	23	14.9999
(.((.	chr2:145270226-145270503(-)$1	1	30	35	14.9999
(((((	chr2:97557696-97557932(-)$1	1	24	29	14.9999
(((((	chr20:31159564-31159845(-)$1	1	2	7	14.9999
)))))	chr4:99849526-99849815(-)$1	1	80	85	14.9999
)))))	chr16:23870397-23870688(+)$1	1	234	239	14.9999
(((((	chr16:1427580-1427882(-)$1	1	92	97	14.9999
.((((	chr3:47010484-47010756(-)$1	1	52	57	14.9999
.((((	chr15:69098502-69098825(-)$1	1	0	5	14.9999
(.(.(	chr12:132401671-132401931(+)$1	1	12	17	14.9999
))))(	chr19:49843200-49843488(-)$1	1	68	73	14.9999
..(((	chr1:27027374-27027631(+)$1	1	8	13	14.9999
)..))	chr6:52227054-52227332(+)$1	1	104	109	14.9999
(((((	chr15:67466196-67466490(+)$1	1	81	86	14.9999
.((((	chr12:121684599-121684942(-)$1	1	29	34	14.9999
)))))	chr22:23535111-23535366(+)$1	1	224	229	14.9999
(((..	chr11:66135523-66135814(-)$1	1	33	38	14.9999
.((((	chr17:46133047-46133317(+)$1	1	106	111	14.9999
))..)	chr19:55856505-55856763(+)$1	1	134	139	14.9999
(((..	chr19:34874574-34874845(+)$1	1	36	41	14.9999
(((((	chrX:41194443-41194687(+)$1	1	50	55	14.9999
(((((	chr11:70269725-70269984(+)$1	1	102	107	14.9999
..((.	chr12:125269395-125269637(-)$1	1	4	9	14.9999
(((((	chr7:32561141-32561501(+)$1	1	135	140	14.9999
(((..	chr9:117152378-117152658(-)$1	1	94	99	14.9999
(((.(	chr6:52227534-52227844(+)$1	1	211	216	14.9999
.((((	chr2:131968000-131968241(+)$1	1	12	17	14.9999
(((((	chr22:19493466-19493737(+)$1	1	7	12	14.9999
)))))	chr19:34877534-34877743(+)$1	1	12	17	14.9999
(((((	chr6:53199858-53200134(-)$1	1	24	29	14.9999
(((((	chr11:126140156-126140473(+)$1	1	234	239	14.9999
(((((	chr15:27368449-27368704(+)$1	1	36	41	14.9999
.....	chr2:170684725-170685006(+)$1	1	5	10	14.9999
((...	chr16:81580656-81580968(+)$1	1	107	112	14.9999
.((((	chr12:122620618-122620917(+)$1	1	178	183	14.9999
)((((	chr12:109124206-109124496(-)$1	1	15	20	14.9999
)..))	chr6:52226995-52227254(+)$1	1	163	168	14.9999
(.(((	chr21:45478018-45478318(+)$1	1	28	33	14.9999
.....	chr4:10108936-10109214(-)$1	1	15	20	14.9999
.))))	chr1:44465393-44465686(-)$1	1	96	101	14.9999
)))))	chr12:54806254-54806533(-)$1	1	102	107	14.9999

#PSSM
U : 0.86	u : 0.13	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	

#score	989.9999999999999
#seq	66
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_UTR_m2_run1.nuc.txt

#NT
GAG	chr5:79946686-79946961(-)$1	275	28	31	9.0000
GAG	chr2:28974736-28974994(+)$1	258	20	23	9.0000
GAG	chr16:89351016-89351325(-)$1	309	56	59	9.0000
GAG	chr5:43291071-43291288(-)$1	217	66	69	9.0000
GAG	chr9:139937759-139938063(-)$1	304	15	18	9.0000
GAG	chr8:71314499-71314724(-)$1	225	61	64	9.0000
gag	chr7:27153331-27153580(-)$1	249	72	75	9.0000
GAG	chr2:44065358-44065645(-)$1	287	5	8	9.0000
gag	chr9:117046924-117047148(+)$1	224	14	17	9.0000
GAG	chr2:20550261-20550595(-)$1	334	27	30	9.0000
GAG	chr17:45773262-45773557(+)$1	295	6	9	9.0000
GAG	chr15:93568470-93568791(+)$1	321	30	33	9.0000
GAG	chr4:83931828-83932088(-)$1	260	35	38	9.0000
GAG	chr12:132402699-132403001(+)$1	302	85	88	9.0000
GAG	chr17:35687014-35687272(-)$1	258	20	23	9.0000
GAG	chr12:26875231-26875449(-)$1	218	2	5	9.0000
GAG	chr7:1577298-1577593(+)$1	295	92	95	9.0000
GAG	chr16:2579718-2579982(+)$1	264	76	79	9.0000
GAG	chr15:28514379-28514625(-)$1	246	55	58	9.0000
GAG	chr14:32546303-32546550(+)$1	247	4	7	9.0000
GAG	chr5:79946501-79946745(-)$1	244	92	95	9.0000
GAG	chr6:15248997-15249294(+)$1	297	46	49	9.0000
GAG	chr17:73233951-73234189(-)$1	238	74	77	9.0000
GAG	chr15:66084350-66084611(-)$1	261	13	16	9.0000
GAG	chr9:117044635-117044851(+)$1	216	131	134	9.0000
GAG	chr17:58469149-58469460(-)$1	311	0	3	9.0000
GAG	chr3:96336714-96336957(-)$1	243	91	94	9.0000
GAG	chr6:56391064-56391352(-)$1	288	43	46	9.0000
GAG	chr7:150777514-150777882(-)$1	368	31	34	9.0000
GAG	chr19:42788461-42788740(+)$1	279	58	61	9.0000
GAG	chr5:43291021-43291271(-)$1	250	49	52	9.0000
GAG	chr16:30935307-30935576(+)$1	269	90	93	9.0000
GAG	chr20:33622833-33623059(-)$1	226	13	16	9.0000
GAG	chr14:21549699-21549937(+)$1	238	8	11	9.0000
GAG	chr2:62932854-62933097(+)$1	243	0	3	9.0000
GAG	chr9:710782-711044(+)$1	262	45	48	9.0000
GAG	chr7:127670441-127670752(+)$1	311	6	9	9.0000
GAG	chr15:28510663-28510905(-)$1	242	36	39	9.0000
gag	chr2:161349881-161350144(-)$1	263	41	44	9.0000
GAG	chr2:36776045-36776320(+)$1	275	64	67	9.0000
GAG	chr2:44055034-44055303(-)$1	269	11	14	9.0000
GAG	chr16:66783065-66783317(-)$1	252	32	35	9.0000
GAG	chr7:77166501-77166749(+)$1	248	0	3	9.0000
GAG	chr19:8538950-8539224(+)$1	274	105	108	9.0000
GAG	chr3:128840308-128840628(-)$1	320	2	5	9.0000
GAG	chr12:76443430-76443654(-)$1	224	116	119	9.0000
gag	chr10:21823334-21823549(+)$1	215	5	8	9.0000
GAG	chr14:56103091-56103354(+)$1	263	93	96	9.0000
GAG	chr11:18034120-18034395(-)$1	275	2	5	9.0000
gag	chr8:143484098-143484385(-)$1	287	9	12	9.0000
GAG	chr3:38207235-38207502(+)$1	267	12	15	9.0000
GAG	chr1:201123359-201123658(-)$1	299	38	41	9.0000
GAG	chr9:117020769-117020973(+)$1	204	67	70	9.0000
GAG	chr5:86563951-86564223(+)$1	272	8	11	9.0000
gAG	chr7:32931177-32931441(-)$1	264	20	23	9.0000
gag	chr2:242447643-242447894(-)$1	251	12	15	9.0000
GAG	chr2:242707567-242707861(+)$1	294	36	39	9.0000
GAG	chr16:447942-448197(+)$1	255	119	122	9.0000
GAG	chr12:104341359-104341590(+)$1	231	111	114	9.0000
GAG	chr17:45773171-45773414(+)$1	243	97	100	9.0000
GAG	chr6:30545522-30545779(+)$1	257	9	12	9.0000
GAG	chr10:21785873-21786177(-)$1	304	9	12	9.0000
GAG	chr9:117027246-117027457(+)$1	211	67	70	9.0000
GAG	chr14:64971275-64971548(+)$1	273	8	11	9.0000
GAG	chr16:30959821-30960156(+)$1	335	41	44	9.0000
GAG	chr19:1104614-1104883(+)$1	269	90	93	9.0000
GAG	chr19:56166203-56166480(+)$1	277	21	24	9.0000
GAG	chr2:54197821-54198044(-)$1	223	2	5	9.0000
GAG	chr8:25220477-25220733(+)$1	256	182	185	9.0000
GAG	chr16:447997-448255(+)$1	258	64	67	9.0000
GAG	chr2:191513658-191513921(+)$1	263	9	12	9.0000
GAG	chr12:26985854-26986151(-)$1	297	5	8	9.0000
GAG	chr7:139257475-139257744(-)$1	269	35	38	9.0000
GAG	chr5:79946614-79946867(-)$1	253	214	217	9.0000
GAG	chr5:137688313-137688667(+)$1	354	83	86	9.0000
GAG	chr9:117044469-117044698(+)$1	229	117	120	9.0000
GAG	chr16:2579842-2580081(+)$1	239	52	55	9.0000
GAG	chr3:9512276-9512526(+)$1	250	4	7	9.0000
GAG	chr17:74380013-74380280(+)$1	267	89	92	9.0000
GAG	chr5:176980204-176980472(-)$1	268	31	34	9.0000
GAG	chr10:103577725-103578033(-)$1	308	34	37	9.0000
GAG	chr3:184102705-184102959(+)$1	254	24	27	9.0000
GAG	chr4:763932-764221(-)$1	289	47	50	9.0000
GAG	chr10:21823278-21823534(+)$1	256	40	43	9.0000
GAG	chr10:121341870-121342115(-)$1	245	92	95	9.0000
GAG	chr11:60658387-60658660(-)$1	273	63	66	9.0000
GAG	chr17:45772827-45773073(+)$1	246	60	63	9.0000
GAG	chr4:2935714-2935977(-)$1	263	7	10	9.0000
GAG	chr14:55255837-55256110(+)$1	273	64	67	9.0000
GAG	chr17:45772666-45772928(+)$1	262	9	12	9.0000
GAG	chr12:62919644-62919980(+)$1	336	147	150	9.0000
GAG	chr11:10530494-10530736(-)$1	242	214	217	9.0000
GAG	chr17:74380149-74380431(+)$1	282	13	16	9.0000
GAG	chr19:6740919-6741154(+)$1	235	1	4	9.0000
GAG	chr9:117050635-117050857(+)$1	222	59	62	9.0000
GAG	chr9:116997788-116998032(+)$1	244	32	35	9.0000
GAG	chr19:15442543-15442792(-)$1	249	46	49	9.0000

#otherMatches

#Struct PSSM
nnn	chr7:139478031-139478311(+)$1	280	13	16	9.0000
ggg	chr5:79946686-79946961(-)$1	275	28	31	9.0000
ndd	chr2:28974736-28974994(+)$1	258	20	23	9.0000
::f	chr16:89351016-89351325(-)$1	309	56	59	9.0000
dd]	chr5:43291071-43291288(-)$1	217	66	69	9.0000
dbb	chr9:139937759-139938063(-)$1	304	15	18	9.0000
DDD	chr8:71314499-71314724(-)$1	225	61	64	9.0000
fcc	chr7:27153331-27153580(-)$1	249	72	75	9.0000
EMM	chr2:44065358-44065645(-)$1	287	5	8	9.0000
B{D	chr9:117046924-117047148(+)$1	224	14	17	9.0000
eee	chr2:20550261-20550595(-)$1	334	27	30	9.0000
$$$	chr17:45773262-45773557(+)$1	295	6	9	9.0000
HHH	chr15:93568470-93568791(+)$1	321	30	33	9.0000
EEi	chr4:83931828-83932088(-)$1	260	35	38	9.0000
e::	chr12:132402699-132403001(+)$1	302	85	88	9.0000
ee:	chr17:35687014-35687272(-)$1	258	20	23	9.0000
:::	chr12:26875231-26875449(-)$1	218	2	5	9.0000
HHH	chr7:1577298-1577593(+)$1	295	92	95	9.0000
KBB	chr16:2579718-2579982(+)$1	264	76	79	9.0000
BBK	chr15:28514379-28514625(-)$1	246	55	58	9.0000
e$$	chr14:32546303-32546550(+)$1	247	4	7	9.0000
BB{	chr5:79946501-79946745(-)$1	244	92	95	9.0000
ccl	chr6:15248997-15249294(+)$1	297	46	49	9.0000
qqq	chr17:73233951-73234189(-)$1	238	74	77	9.0000
""a	chr15:66084350-66084611(-)$1	261	13	16	9.0000
ooo	chr9:117044635-117044851(+)$1	216	131	134	9.0000
:::	chr17:58469149-58469460(-)$1	311	0	3	9.0000
BB{	chr3:96336714-96336957(-)$1	243	91	94	9.0000
ccc	chr6:56391064-56391352(-)$1	288	43	46	9.0000
nnb	chr7:150777514-150777882(-)$1	368	31	34	9.0000
D{C	chr19:42788461-42788740(+)$1	279	58	61	9.0000
dd]	chr5:43291021-43291271(-)$1	250	49	52	9.0000
D{D	chr16:30935307-30935576(+)$1	269	90	93	9.0000
aoo	chr20:33622833-33623059(-)$1	226	13	16	9.0000
mme	chr14:21549699-21549937(+)$1	238	8	11	9.0000
::B	chr2:62932854-62933097(+)$1	243	0	3	9.0000
III	chr9:710782-711044(+)$1	262	45	48	9.0000
::c	chr7:127670441-127670752(+)$1	311	6	9	9.0000
2ee	chr15:28510663-28510905(-)$1	242	36	39	9.0000
ooo	chr2:161349881-161350144(-)$1	263	41	44	9.0000
ggg	chr2:36776045-36776320(+)$1	275	64	67	9.0000
FFB	chr2:44055034-44055303(-)$1	269	11	14	9.0000
+++	chr16:66783065-66783317(-)$1	252	32	35	9.0000
::D	chr7:77166501-77166749(+)$1	248	0	3	9.0000
FFF	chr19:8538950-8539224(+)$1	274	105	108	9.0000
C{I	chr3:128840308-128840628(-)$1	320	2	5	9.0000
ddd	chr12:76443430-76443654(-)$1	224	116	119	9.0000
GGG	chr10:21823334-21823549(+)$1	215	5	8	9.0000
::G	chr14:56103091-56103354(+)$1	263	93	96	9.0000
c!!	chr11:18034120-18034395(-)$1	275	2	5	9.0000
JJJ	chr8:143484098-143484385(-)$1	287	9	12	9.0000
ddn	chr3:38207235-38207502(+)$1	267	12	15	9.0000
fff	chr1:201123359-201123658(-)$1	299	38	41	9.0000
"""	chr9:117020769-117020973(+)$1	204	67	70	9.0000
C{G	chr5:86563951-86564223(+)$1	272	8	11	9.0000
LLL	chr7:32931177-32931441(-)$1	264	20	23	9.0000
CKK	chr2:242447643-242447894(-)$1	251	12	15	9.0000
JJJ	chr2:242707567-242707861(+)$1	294	36	39	9.0000
DDD	chr16:447942-448197(+)$1	255	119	122	9.0000
d]e	chr12:104341359-104341590(+)$1	231	111	114	9.0000
&&&	chr17:45773171-45773414(+)$1	243	97	100	9.0000
&&&	chr6:30545522-30545779(+)$1	257	9	12	9.0000
:::	chr10:21785873-21786177(-)$1	304	9	12	9.0000
ddd	chr9:117027246-117027457(+)$1	211	67	70	9.0000
E{E	chr14:64971275-64971548(+)$1	273	8	11	9.0000
ddd	chr16:30959821-30960156(+)$1	335	41	44	9.0000
f]c	chr19:1104614-1104883(+)$1	269	90	93	9.0000
MMM	chr19:56166203-56166480(+)$1	277	21	24	9.0000
::F	chr2:54197821-54198044(-)$1	223	2	5	9.0000
ddd	chr8:25220477-25220733(+)$1	256	182	185	9.0000
iii	chr16:447997-448255(+)$1	258	64	67	9.0000
mmb	chr2:191513658-191513921(+)$1	263	9	12	9.0000
eee	chr12:26985854-26986151(-)$1	297	5	8	9.0000
LLL	chr7:139257475-139257744(-)$1	269	35	38	9.0000
c::	chr5:79946614-79946867(-)$1	253	214	217	9.0000
::H	chr5:137688313-137688667(+)$1	354	83	86	9.0000
H:f	chr9:117044469-117044698(+)$1	229	117	120	9.0000
BKK	chr16:2579842-2580081(+)$1	239	52	55	9.0000
D::	chr3:9512276-9512526(+)$1	250	4	7	9.0000
mmm	chr17:74380013-74380280(+)$1	267	89	92	9.0000
h[a	chr5:176980204-176980472(-)$1	268	31	34	9.0000
EEE	chr10:103577725-103578033(-)$1	308	34	37	9.0000
g[b	chr3:184102705-184102959(+)$1	254	24	27	9.0000
xbb	chr4:763932-764221(-)$1	289	47	50	9.0000
444	chr10:21823278-21823534(+)$1	256	40	43	9.0000
::g	chr10:121341870-121342115(-)$1	245	92	95	9.0000
hhh	chr11:60658387-60658660(-)$1	273	63	66	9.0000
b!!	chr17:45772827-45773073(+)$1	246	60	63	9.0000
{CC	chr4:2935714-2935977(-)$1	263	7	10	9.0000
ffm	chr14:55255837-55256110(+)$1	273	64	67	9.0000
ddd	chr17:45772666-45772928(+)$1	262	9	12	9.0000
fff	chr12:62919644-62919980(+)$1	336	147	150	9.0000
ddd	chr11:10530494-10530736(-)$1	242	214	217	9.0000
G:G	chr17:74380149-74380431(+)$1	282	13	16	9.0000
:::	chr19:6740919-6741154(+)$1	235	1	4	9.0000
cce	chr9:117050635-117050857(+)$1	222	59	62	9.0000
{CC	chr9:116997788-116998032(+)$1	244	32	35	9.0000
B{C	chr19:15442543-15442792(-)$1	249	46	49	9.0000

#DB
...	chr7:139478031-139478311(+)$1	1	13	16	9.0000
(((	chr5:79946686-79946961(-)$1	1	28	31	9.0000
.))	chr2:28974736-28974994(+)$1	1	20	23	9.0000
..(	chr16:89351016-89351325(-)$1	1	56	59	9.0000
)).	chr5:43291071-43291288(-)$1	1	66	69	9.0000
)((	chr9:139937759-139938063(-)$1	1	15	18	9.0000
(((	chr8:71314499-71314724(-)$1	1	61	64	9.0000
)))	chr7:27153331-27153580(-)$1	1	72	75	9.0000
(..	chr2:44065358-44065645(-)$1	1	5	8	9.0000
(.(	chr9:117046924-117047148(+)$1	1	14	17	9.0000
(((	chr2:20550261-20550595(-)$1	1	27	30	9.0000
...	chr17:45773262-45773557(+)$1	1	6	9	9.0000
(((	chr15:93568470-93568791(+)$1	1	30	33	9.0000
(((	chr4:83931828-83932088(-)$1	1	35	38	9.0000
)..	chr12:132402699-132403001(+)$1	1	85	88	9.0000
)).	chr17:35687014-35687272(-)$1	1	20	23	9.0000
...	chr12:26875231-26875449(-)$1	1	2	5	9.0000
(((	chr7:1577298-1577593(+)$1	1	92	95	9.0000
.((	chr16:2579718-2579982(+)$1	1	76	79	9.0000
((.	chr15:28514379-28514625(-)$1	1	55	58	9.0000
(..	chr14:32546303-32546550(+)$1	1	4	7	9.0000
((.	chr5:79946501-79946745(-)$1	1	92	95	9.0000
((.	chr6:15248997-15249294(+)$1	1	46	49	9.0000
...	chr17:73233951-73234189(-)$1	1	74	77	9.0000
..(	chr15:66084350-66084611(-)$1	1	13	16	9.0000
...	chr9:117044635-117044851(+)$1	1	131	134	9.0000
...	chr17:58469149-58469460(-)$1	1	0	3	9.0000
((.	chr3:96336714-96336957(-)$1	1	91	94	9.0000
)))	chr6:56391064-56391352(-)$1	1	43	46	9.0000
..)	chr7:150777514-150777882(-)$1	1	31	34	9.0000
(.(	chr19:42788461-42788740(+)$1	1	58	61	9.0000
)).	chr5:43291021-43291271(-)$1	1	49	52	9.0000
(.(	chr16:30935307-30935576(+)$1	1	90	93	9.0000
(..	chr20:33622833-33623059(-)$1	1	13	16	9.0000
..)	chr14:21549699-21549937(+)$1	1	8	11	9.0000
..(	chr2:62932854-62933097(+)$1	1	0	3	9.0000
(((	chr9:710782-711044(+)$1	1	45	48	9.0000
..(	chr7:127670441-127670752(+)$1	1	6	9	9.0000
.))	chr15:28510663-28510905(-)$1	1	36	39	9.0000
...	chr2:161349881-161350144(-)$1	1	41	44	9.0000
)))	chr2:36776045-36776320(+)$1	1	64	67	9.0000
(((	chr2:44055034-44055303(-)$1	1	11	14	9.0000
...	chr16:66783065-66783317(-)$1	1	32	35	9.0000
..(	chr7:77166501-77166749(+)$1	1	0	3	9.0000
)))	chr19:8538950-8539224(+)$1	1	105	108	9.0000
(.(	chr3:128840308-128840628(-)$1	1	2	5	9.0000
)))	chr12:76443430-76443654(-)$1	1	116	119	9.0000
(((	chr10:21823334-21823549(+)$1	1	5	8	9.0000
..)	chr14:56103091-56103354(+)$1	1	93	96	9.0000
(..	chr11:18034120-18034395(-)$1	1	2	5	9.0000
(((	chr8:143484098-143484385(-)$1	1	9	12	9.0000
((.	chr3:38207235-38207502(+)$1	1	12	15	9.0000
(((	chr1:201123359-201123658(-)$1	1	38	41	9.0000
...	chr9:117020769-117020973(+)$1	1	67	70	9.0000
(.(	chr5:86563951-86564223(+)$1	1	8	11	9.0000
...	chr7:32931177-32931441(-)$1	1	20	23	9.0000
(..	chr2:242447643-242447894(-)$1	1	12	15	9.0000
(((	chr2:242707567-242707861(+)$1	1	36	39	9.0000
(((	chr16:447942-448197(+)$1	1	119	122	9.0000
).)	chr12:104341359-104341590(+)$1	1	111	114	9.0000
...	chr17:45773171-45773414(+)$1	1	97	100	9.0000
...	chr6:30545522-30545779(+)$1	1	9	12	9.0000
...	chr10:21785873-21786177(-)$1	1	9	12	9.0000
)))	chr9:117027246-117027457(+)$1	1	67	70	9.0000
(.(	chr14:64971275-64971548(+)$1	1	8	11	9.0000
(((	chr16:30959821-30960156(+)$1	1	41	44	9.0000
).)	chr19:1104614-1104883(+)$1	1	90	93	9.0000
...	chr19:56166203-56166480(+)$1	1	21	24	9.0000
..(	chr2:54197821-54198044(-)$1	1	2	5	9.0000
)))	chr8:25220477-25220733(+)$1	1	182	185	9.0000
(((	chr16:447997-448255(+)$1	1	64	67	9.0000
..)	chr2:191513658-191513921(+)$1	1	9	12	9.0000
(((	chr12:26985854-26986151(-)$1	1	5	8	9.0000
...	chr7:139257475-139257744(-)$1	1	35	38	9.0000
)..	chr5:79946614-79946867(-)$1	1	214	217	9.0000
..(	chr5:137688313-137688667(+)$1	1	83	86	9.0000
).(	chr9:117044469-117044698(+)$1	1	117	120	9.0000
(..	chr16:2579842-2580081(+)$1	1	52	55	9.0000
(..	chr3:9512276-9512526(+)$1	1	4	7	9.0000
...	chr17:74380013-74380280(+)$1	1	89	92	9.0000
(.(	chr5:176980204-176980472(-)$1	1	31	34	9.0000
(((	chr10:103577725-103578033(-)$1	1	34	37	9.0000
(.(	chr3:184102705-184102959(+)$1	1	24	27	9.0000
.))	chr4:763932-764221(-)$1	1	47	50	9.0000
...	chr10:21823278-21823534(+)$1	1	40	43	9.0000
..(	chr10:121341870-121342115(-)$1	1	92	95	9.0000
)))	chr11:60658387-60658660(-)$1	1	63	66	9.0000
(..	chr17:45772827-45773073(+)$1	1	60	63	9.0000
.((	chr4:2935714-2935977(-)$1	1	7	10	9.0000
((.	chr14:55255837-55256110(+)$1	1	64	67	9.0000
)))	chr17:45772666-45772928(+)$1	1	9	12	9.0000
(((	chr12:62919644-62919980(+)$1	1	147	150	9.0000
)))	chr11:10530494-10530736(-)$1	1	214	217	9.0000
(.(	chr17:74380149-74380431(+)$1	1	13	16	9.0000
...	chr19:6740919-6741154(+)$1	1	1	4	9.0000
(((	chr9:117050635-117050857(+)$1	1	59	62	9.0000
.((	chr9:116997788-116998032(+)$1	1	32	35	9.0000
(.(	chr19:15442543-15442792(-)$1	1	46	49	9.0000

#PSSM
G : 0.92	g : 0.07	
A : 0.93	a : 0.06	
G : 0.93	g : 0.06	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_CDS_m1_run1.nuc.txt

#NT
AGA	chr2:232327809-232328066(-)$1	257	64	67	9.0000
AGA	chr9:131022948-131023190(-)$1	242	37	40	9.0000
AGA	chr7:72912832-72913088(-)$1	256	70	73	9.0000
AGA	chr5:137501416-137501664(-)$1	248	0	3	9.0000
AGA	chr12:133372334-133372566(-)$1	232	16	19	9.0000
AGA	chr1:16257692-16257923(+)$1	231	4	7	9.0000
AGA	chr19:17264702-17264946(+)$1	244	15	18	9.0000
AGA	chr7:152027604-152027862(-)$1	258	36	39	9.0000
AGA	chr1:186330873-186331096(-)$1	223	65	68	9.0000
AGA	chr14:102549277-102549534(-)$1	257	24	27	9.0000
AGA	chr3:15064606-15064870(+)$1	264	106	109	9.0000
AGA	chr5:157232832-157233073(-)$1	241	10	13	9.0000
AGA	chr5:139825350-139825638(+)$1	288	55	58	9.0000
AGA	chr22:21224523-21224820(+)$1	297	8	11	9.0000
AGA	chr17:42286744-42287011(-)$1	267	113	116	9.0000
AGA	chrM:14200-14422(-)$1	222	68	71	9.0000
AGA	chr12:113598998-113599270(-)$1	272	88	91	9.0000
AGA	chr20:62575809-62576064(-)$1	255	6	9	9.0000
AGA	chr5:150425314-150425580(-)$1	266	8	11	9.0000
AGA	chr17:42289157-42289403(-)$1	246	30	33	9.0000
AGA	chr9:131023351-131023628(-)$1	277	21	24	9.0000
AGA	chr21:34921761-34921988(+)$1	227	18	21	9.0000
AGA	chr12:95876888-95877157(+)$1	269	16	19	9.0000
AGA	chr12:104333188-104333495(+)$1	307	65	68	9.0000
AGA	chr6:111346540-111346794(+)$1	254	3	6	9.0000
AGA	chr1:39782830-39783085(+)$1	255	80	83	9.0000
AGA	chrM:14159-14397(-)$1	238	43	46	9.0000
AGA	chr3:9489509-9489768(+)$1	259	0	3	9.0000
AGA	chr7:6461254-6461493(-)$1	239	83	86	9.0000
AGA	chr12:132445031-132445279(+)$1	248	99	102	9.0000
AGA	chr7:104782541-104782868(-)$1	327	1	4	9.0000
AGA	chr10:129906022-129906257(-)$1	235	68	71	9.0000
AGA	chr10:32311749-32312017(-)$1	268	76	79	9.0000
AGA	chr5:71491381-71491684(+)$1	303	11	14	9.0000
AGA	chr1:32645825-32646150(+)$1	325	44	47	9.0000
AGA	chr2:198281396-198281690(-)$1	294	3	6	9.0000
AGA	chrX:53439048-53439296(-)$1	248	95	98	9.0000
AGA	chr10:12071253-12071579(-)$1	326	20	23	9.0000
AGA	chr2:55771940-55772239(+)$1	299	1	4	9.0000
AGA	chr2:99992804-99993048(+)$1	244	6	9	9.0000
AGA	chr19:39949358-39949626(+)$1	268	130	133	9.0000
AGA	chr11:6566343-6566620(+)$1	277	33	36	9.0000
AGA	chr22:19707970-19708198(+)$1	228	142	145	9.0000
AGA	chr3:37366151-37366436(+)$1	285	11	14	9.0000
AGA	chr11:47765445-47765716(-)$1	271	3	6	9.0000
AGA	chrX:53436297-53436531(-)$1	234	34	37	9.0000
AGA	chr5:162910980-162911236(+)$1	256	46	49	9.0000
AGA	chr12:6710716-6710954(-)$1	238	51	54	9.0000
AGA	chr7:933243-933538(+)$1	295	212	215	9.0000
AGA	chr1:246754845-246755154(+)$1	309	57	60	9.0000
AGA	chr9:132591382-132591631(-)$1	249	81	84	9.0000
AGA	chr1:26595953-26596202(+)$1	249	16	19	9.0000
AGA	chr2:99978053-99978328(+)$1	275	2	5	9.0000
AGA	chr12:104341310-104341531(+)$1	221	117	120	9.0000
AGA	chr1:39790263-39790495(+)$1	232	62	65	9.0000
AGA	chr11:65822648-65822885(+)$1	237	65	68	9.0000
AGA	chr17:2614805-2615049(-)$1	244	104	107	9.0000
aga	chr1:29475196-29475422(-)$1	226	1	4	9.0000
AGA	chr1:59248282-59248533(-)$1	251	92	95	9.0000
AGA	chr11:71728705-71728949(-)$1	244	13	16	9.0000
AGA	chr17:48823804-48824098(+)$1	294	96	99	9.0000
AGA	chr19:55649315-55649543(-)$1	228	105	108	9.0000
AGA	chr22:26165226-26165487(+)$1	261	7	10	9.0000
AGA	chr6:157150276-157150573(+)$1	297	44	47	9.0000
AGA	chr1:214814326-214814634(+)$1	308	24	27	9.0000
AGA	chr15:93552329-93552588(+)$1	259	8	11	9.0000
AGA	chr7:91623936-91624189(+)$1	253	3	6	9.0000
AGA	chr5:149751636-149751894(+)$1	258	74	77	9.0000
AGA	chr2:118579424-118579740(+)$1	316	42	45	9.0000
AGA	chr6:44360314-44360590(+)$1	276	3	6	9.0000
AGA	chr17:65849955-65850218(+)$1	263	49	52	9.0000
AGA	chr2:232577052-232577316(+)$1	264	107	110	9.0000
AGA	chr12:133384853-133385134(-)$1	281	23	26	9.0000
AGA	chr6:33382597-33382838(+)$1	241	71	74	9.0000
AGA	chr7:152027662-152027925(-)$1	263	30	33	9.0000
AGA	chr14:23549406-23549655(-)$1	249	10	13	9.0000
aga	chr11:65825438-65825721(+)$1	283	18	21	9.0000
AGA	chr9:140610979-140611250(+)$1	271	54	57	9.0000
aga	chr20:57561048-57561323(+)$1	275	0	3	9.0000
AGA	chr20:57242955-57243269(+)$1	314	36	39	9.0000
AGA	chr12:6711510-6711744(-)$1	234	79	82	9.0000
aga	chr22:20918795-20919036(+)$1	241	67	70	9.0000
AGA	chr9:131023850-131024087(-)$1	237	20	23	9.0000
AGA	chr16:89351878-89352124(-)$1	246	18	21	9.0000
AGA	chr3:47043104-47043319(+)$1	215	153	156	9.0000
AGA	chr19:50156299-50156566(+)$1	267	3	6	9.0000
AGA	chr6:76372866-76373189(+)$1	323	24	27	9.0000
AGA	chr8:37732083-37732375(-)$1	292	0	3	9.0000
AGA	chr19:6387314-6387566(-)$1	252	10	13	9.0000
AGA	chr17:34942398-34942711(+)$1	313	46	49	9.0000
AGA	chr17:27010577-27010845(+)$1	268	75	78	9.0000
AGA	chr1:171510267-171510518(+)$1	251	7	10	9.0000
AGA	chr7:155465463-155465710(+)$1	247	10	13	9.0000
AGA	chr1:19432963-19433189(-)$1	226	3	6	9.0000
AGA	chr19:5645276-5645513(+)$1	237	6	9	9.0000
AGA	chr17:38569100-38569308(-)$1	208	41	44	9.0000
AGA	chr12:133365610-133365888(-)$1	278	50	53	9.0000
AGA	chr11:65820043-65820279(+)$1	236	11	14	9.0000
AGA	chr7:1887153-1887406(-)$1	253	71	74	9.0000

#otherMatches

#Struct PSSM
fdd	chr6:33638365-33638617(+)$1	252	25	28	9.0000
:::	chr2:232327809-232328066(-)$1	257	64	67	9.0000
ggg	chr9:131022948-131023190(-)$1	242	37	40	9.0000
iii	chr7:72912832-72913088(-)$1	256	70	73	9.0000
:EE	chr5:137501416-137501664(-)$1	248	0	3	9.0000
CCC	chr12:133372334-133372566(-)$1	232	16	19	9.0000
ff[	chr1:16257692-16257923(+)$1	231	4	7	9.0000
KCC	chr19:17264702-17264946(+)$1	244	15	18	9.0000
eee	chr7:152027604-152027862(-)$1	258	36	39	9.0000
ddm	chr1:186330873-186331096(-)$1	223	65	68	9.0000
[cc	chr14:102549277-102549534(-)$1	257	24	27	9.0000
c[a	chr3:15064606-15064870(+)$1	264	106	109	9.0000
mmm	chr5:157232832-157233073(-)$1	241	10	13	9.0000
:::	chr5:139825350-139825638(+)$1	288	55	58	9.0000
{CC	chr22:21224523-21224820(+)$1	297	8	11	9.0000
dd5	chr17:42286744-42287011(-)$1	267	113	116	9.0000
ooo	chrM:14200-14422(-)$1	222	68	71	9.0000
ooo	chr12:113598998-113599270(-)$1	272	88	91	9.0000
ppp	chr20:62575809-62576064(-)$1	255	6	9	9.0000
bb[	chr5:150425314-150425580(-)$1	266	8	11	9.0000
qqq	chr17:42289157-42289403(-)$1	246	30	33	9.0000
b]d	chr9:131023351-131023628(-)$1	277	21	24	9.0000
:ee	chr21:34921761-34921988(+)$1	227	18	21	9.0000
iii	chr12:95876888-95877157(+)$1	269	16	19	9.0000
2ii	chr12:104333188-104333495(+)$1	307	65	68	9.0000
:::	chr6:111346540-111346794(+)$1	254	3	6	9.0000
eee	chr1:39782830-39783085(+)$1	255	80	83	9.0000
a]e	chrM:14159-14397(-)$1	238	43	46	9.0000
:HH	chr3:9489509-9489768(+)$1	259	0	3	9.0000
???	chr7:6461254-6461493(-)$1	239	83	86	9.0000
EEE	chr12:132445031-132445279(+)$1	248	99	102	9.0000
:::	chr7:104782541-104782868(-)$1	327	1	4	9.0000
[ap	chr10:129906022-129906257(-)$1	235	68	71	9.0000
ddd	chr10:32311749-32312017(-)$1	268	76	79	9.0000
obb	chr5:71491381-71491684(+)$1	303	11	14	9.0000
dmm	chr1:32645825-32646150(+)$1	325	44	47	9.0000
HHH	chr2:198281396-198281690(-)$1	294	3	6	9.0000
hhh	chrX:53439048-53439296(-)$1	248	95	98	9.0000
FMM	chr10:12071253-12071579(-)$1	326	20	23	9.0000
:GG	chr2:55771940-55772239(+)$1	299	1	4	9.0000
CLL	chr2:99992804-99993048(+)$1	244	6	9	9.0000
fff	chr19:39949358-39949626(+)$1	268	130	133	9.0000
ggg	chr11:6566343-6566620(+)$1	277	33	36	9.0000
fff	chr22:19707970-19708198(+)$1	228	142	145	9.0000
{BB	chr3:37366151-37366436(+)$1	285	11	14	9.0000
DGG	chr11:47765445-47765716(-)$1	271	3	6	9.0000
qqq	chrX:53436297-53436531(-)$1	234	34	37	9.0000
:::	chr5:162910980-162911236(+)$1	256	46	49	9.0000
ccc	chr12:6710716-6710954(-)$1	238	51	54	9.0000
333	chr7:933243-933538(+)$1	295	212	215	9.0000
xxx	chr1:246754845-246755154(+)$1	309	57	60	9.0000
b]d	chr9:132591382-132591631(-)$1	249	81	84	9.0000
DD{	chr1:26595953-26596202(+)$1	249	16	19	9.0000
:::	chr2:99978053-99978328(+)$1	275	2	5	9.0000
ggg	chr12:104341310-104341531(+)$1	221	117	120	9.0000
ooo	chr1:39790263-39790495(+)$1	232	62	65	9.0000
sss	chr11:65822648-65822885(+)$1	237	65	68	9.0000
:cc	chr17:2614805-2615049(-)$1	244	104	107	9.0000
:::	chr1:29475196-29475422(-)$1	226	1	4	9.0000
^^^	chr1:59248282-59248533(-)$1	251	92	95	9.0000
LLL	chr11:71728705-71728949(-)$1	244	13	16	9.0000
ggg	chr17:48823804-48824098(+)$1	294	96	99	9.0000
d55	chr19:55649315-55649543(-)$1	228	105	108	9.0000
III	chr22:26165226-26165487(+)$1	261	7	10	9.0000
ee:	chr6:157150276-157150573(+)$1	297	44	47	9.0000
bdd	chr1:214814326-214814634(+)$1	308	24	27	9.0000
GGG	chr15:93552329-93552588(+)$1	259	8	11	9.0000
:FF	chr7:91623936-91624189(+)$1	253	3	6	9.0000
bb!	chr5:149751636-149751894(+)$1	258	74	77	9.0000
ddm	chr2:118579424-118579740(+)$1	316	42	45	9.0000
:::	chr6:44360314-44360590(+)$1	276	3	6	9.0000
iii	chr17:65849955-65850218(+)$1	263	49	52	9.0000
ggg	chr2:232577052-232577316(+)$1	264	107	110	9.0000
:::	chr12:133384853-133385134(-)$1	281	23	26	9.0000
(((	chr6:33382597-33382838(+)$1	241	71	74	9.0000
:bb	chr7:152027662-152027925(-)$1	263	30	33	9.0000
FFF	chr14:23549406-23549655(-)$1	249	10	13	9.0000
:::	chr11:65825438-65825721(+)$1	283	18	21	9.0000
nnn	chr9:140610979-140611250(+)$1	271	54	57	9.0000
:::	chr20:57561048-57561323(+)$1	275	0	3	9.0000
ffq	chr20:57242955-57243269(+)$1	314	36	39	9.0000
eee	chr12:6711510-6711744(-)$1	234	79	82	9.0000
KKB	chr22:20918795-20919036(+)$1	241	67	70	9.0000
ccc	chr9:131023850-131024087(-)$1	237	20	23	9.0000
ccc	chr16:89351878-89352124(-)$1	246	18	21	9.0000
DDD	chr3:47043104-47043319(+)$1	215	153	156	9.0000
:::	chr19:50156299-50156566(+)$1	267	3	6	9.0000
===	chr6:76372866-76373189(+)$1	323	24	27	9.0000
:::	chr8:37732083-37732375(-)$1	292	0	3	9.0000
:::	chr19:6387314-6387566(-)$1	252	10	13	9.0000
ddd	chr17:34942398-34942711(+)$1	313	46	49	9.0000
##b	chr17:27010577-27010845(+)$1	268	75	78	9.0000
:CC	chr1:171510267-171510518(+)$1	251	7	10	9.0000
fff	chr7:155465463-155465710(+)$1	247	10	13	9.0000
:::	chr1:19432963-19433189(-)$1	226	3	6	9.0000
mmm	chr19:5645276-5645513(+)$1	237	6	9	9.0000
==:	chr17:38569100-38569308(-)$1	208	41	44	9.0000
hhh	chr12:133365610-133365888(-)$1	278	50	53	9.0000
FFF	chr11:65820043-65820279(+)$1	236	11	14	9.0000
DDD	chr7:1887153-1887406(-)$1	253	71	74	9.0000

#DB
(((	chr6:33638365-33638617(+)$1	1	25	28	9.0000
...	chr2:232327809-232328066(-)$1	1	64	67	9.0000
(((	chr9:131022948-131023190(-)$1	1	37	40	9.0000
)))	chr7:72912832-72913088(-)$1	1	70	73	9.0000
.((	chr5:137501416-137501664(-)$1	1	0	3	9.0000
(((	chr12:133372334-133372566(-)$1	1	16	19	9.0000
((.	chr1:16257692-16257923(+)$1	1	4	7	9.0000
.((	chr19:17264702-17264946(+)$1	1	15	18	9.0000
(((	chr7:152027604-152027862(-)$1	1	36	39	9.0000
((.	chr1:186330873-186331096(-)$1	1	65	68	9.0000
.((	chr14:102549277-102549534(-)$1	1	24	27	9.0000
(.(	chr3:15064606-15064870(+)$1	1	106	109	9.0000
...	chr5:157232832-157233073(-)$1	1	10	13	9.0000
...	chr5:139825350-139825638(+)$1	1	55	58	9.0000
.((	chr22:21224523-21224820(+)$1	1	8	11	9.0000
)).	chr17:42286744-42287011(-)$1	1	113	116	9.0000
...	chrM:14200-14422(-)$1	1	68	71	9.0000
...	chr12:113598998-113599270(-)$1	1	88	91	9.0000
...	chr20:62575809-62576064(-)$1	1	6	9	9.0000
((.	chr5:150425314-150425580(-)$1	1	8	11	9.0000
...	chr17:42289157-42289403(-)$1	1	30	33	9.0000
).)	chr9:131023351-131023628(-)$1	1	21	24	9.0000
.((	chr21:34921761-34921988(+)$1	1	18	21	9.0000
(((	chr12:95876888-95877157(+)$1	1	16	19	9.0000
.))	chr12:104333188-104333495(+)$1	1	65	68	9.0000
...	chr6:111346540-111346794(+)$1	1	3	6	9.0000
(((	chr1:39782830-39783085(+)$1	1	80	83	9.0000
).)	chrM:14159-14397(-)$1	1	43	46	9.0000
.((	chr3:9489509-9489768(+)$1	1	0	3	9.0000
...	chr7:6461254-6461493(-)$1	1	83	86	9.0000
)))	chr12:132445031-132445279(+)$1	1	99	102	9.0000
...	chr7:104782541-104782868(-)$1	1	1	4	9.0000
.(.	chr10:129906022-129906257(-)$1	1	68	71	9.0000
)((	chr10:32311749-32312017(-)$1	1	76	79	9.0000
.))	chr5:71491381-71491684(+)$1	1	11	14	9.0000
(..	chr1:32645825-32646150(+)$1	1	44	47	9.0000
(((	chr2:198281396-198281690(-)$1	1	3	6	9.0000
)))	chrX:53439048-53439296(-)$1	1	95	98	9.0000
(..	chr10:12071253-12071579(-)$1	1	20	23	9.0000
.((	chr2:55771940-55772239(+)$1	1	1	4	9.0000
(..	chr2:99992804-99993048(+)$1	1	6	9	9.0000
)))	chr19:39949358-39949626(+)$1	1	130	133	9.0000
)))	chr11:6566343-6566620(+)$1	1	33	36	9.0000
(((	chr22:19707970-19708198(+)$1	1	142	145	9.0000
.((	chr3:37366151-37366436(+)$1	1	11	14	9.0000
(((	chr11:47765445-47765716(-)$1	1	3	6	9.0000
...	chrX:53436297-53436531(-)$1	1	34	37	9.0000
...	chr5:162910980-162911236(+)$1	1	46	49	9.0000
)))	chr12:6710716-6710954(-)$1	1	51	54	9.0000
...	chr7:933243-933538(+)$1	1	212	215	9.0000
...	chr1:246754845-246755154(+)$1	1	57	60	9.0000
).)	chr9:132591382-132591631(-)$1	1	81	84	9.0000
((.	chr1:26595953-26596202(+)$1	1	16	19	9.0000
...	chr2:99978053-99978328(+)$1	1	2	5	9.0000
(((	chr12:104341310-104341531(+)$1	1	117	120	9.0000
...	chr1:39790263-39790495(+)$1	1	62	65	9.0000
...	chr11:65822648-65822885(+)$1	1	65	68	9.0000
.((	chr17:2614805-2615049(-)$1	1	104	107	9.0000
...	chr1:29475196-29475422(-)$1	1	1	4	9.0000
...	chr1:59248282-59248533(-)$1	1	92	95	9.0000
...	chr11:71728705-71728949(-)$1	1	13	16	9.0000
)))	chr17:48823804-48824098(+)$1	1	96	99	9.0000
)..	chr19:55649315-55649543(-)$1	1	105	108	9.0000
(((	chr22:26165226-26165487(+)$1	1	7	10	9.0000
)).	chr6:157150276-157150573(+)$1	1	44	47	9.0000
(((	chr1:214814326-214814634(+)$1	1	24	27	9.0000
(((	chr15:93552329-93552588(+)$1	1	8	11	9.0000
.((	chr7:91623936-91624189(+)$1	1	3	6	9.0000
((.	chr5:149751636-149751894(+)$1	1	74	77	9.0000
((.	chr2:118579424-118579740(+)$1	1	42	45	9.0000
...	chr6:44360314-44360590(+)$1	1	3	6	9.0000
(((	chr17:65849955-65850218(+)$1	1	49	52	9.0000
)))	chr2:232577052-232577316(+)$1	1	107	110	9.0000
...	chr12:133384853-133385134(-)$1	1	23	26	9.0000
...	chr6:33382597-33382838(+)$1	1	71	74	9.0000
.((	chr7:152027662-152027925(-)$1	1	30	33	9.0000
(((	chr14:23549406-23549655(-)$1	1	10	13	9.0000
...	chr11:65825438-65825721(+)$1	1	18	21	9.0000
...	chr9:140610979-140611250(+)$1	1	54	57	9.0000
...	chr20:57561048-57561323(+)$1	1	0	3	9.0000
((.	chr20:57242955-57243269(+)$1	1	36	39	9.0000
)))	chr12:6711510-6711744(-)$1	1	79	82	9.0000
..(	chr22:20918795-20919036(+)$1	1	67	70	9.0000
(((	chr9:131023850-131024087(-)$1	1	20	23	9.0000
)))	chr16:89351878-89352124(-)$1	1	18	21	9.0000
)))	chr3:47043104-47043319(+)$1	1	153	156	9.0000
...	chr19:50156299-50156566(+)$1	1	3	6	9.0000
(((	chr6:76372866-76373189(+)$1	1	24	27	9.0000
...	chr8:37732083-37732375(-)$1	1	0	3	9.0000
...	chr19:6387314-6387566(-)$1	1	10	13	9.0000
(((	chr17:34942398-34942711(+)$1	1	46	49	9.0000
..(	chr17:27010577-27010845(+)$1	1	75	78	9.0000
.((	chr1:171510267-171510518(+)$1	1	7	10	9.0000
(((	chr7:155465463-155465710(+)$1	1	10	13	9.0000
...	chr1:19432963-19433189(-)$1	1	3	6	9.0000
...	chr19:5645276-5645513(+)$1	1	6	9	9.0000
)).	chr17:38569100-38569308(-)$1	1	41	44	9.0000
)))	chr12:133365610-133365888(-)$1	1	50	53	9.0000
(((	chr11:65820043-65820279(+)$1	1	11	14	9.0000
(((	chr7:1887153-1887406(-)$1	1	71	74	9.0000

#PSSM
A : 0.96	a : 0.04	
G : 0.96	g : 0.04	
A : 0.96	a : 0.04	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_CDS_m3_run1.nuc.txt

#NT
GCGGAGCGGGCAGGGUGgggagggcuggggagggagggcgggcagggugggguggaagggagagcagggcuggggugggagggaaguggggagggagCCGUGUCCAGGGCAUCUGUGUCACUCCCACUUCCAGGGGUGUCGACUUCACCGGGACUACCGUGGGGUUUGCCAGGGUGUCCGCCAUGUGCUCCCACAGCUCAGGGGCUGUGAACCAGGUGAGGGGGCUCCUGCCCGGGUUUGCCAGGCCGAGGCCAGAGCUGG	chr10:135085602-135085920(-)$1	318	9	270	355.5000

#otherMatches

#Struct PSSM
lbb]iiiiiiiii]dddd::::::::::dddd[===========ssssssssss===========]dddd:CCC:ggggggg!!bb[ccceeeee!!ayyyyyyyyyyyyyyyya22eeeee55555ccc]bb22ggggggg:::a!!gggggggmmmmggggggg22a::hhhhhhhh[eeeee[a[cccbbffffffooooooffffff]bb]ccc]a]eeeeehhhhhhhhBB}GGGGGGGYYDDDD:ddddoooooo	chr3:38173352-38173657(-)$1	305	40	301	355.5000
GGGGG{HHHHHHHHBBOOOOOOA{DDDD:::EEEEE{CCCCCC::hhhhhhhh[a''''''''ccc"""eeeeeffffff$$$$$dddd[a[ccc[cccqqqqqqqqccc]ccc]a]ddddffffff]eeeee333ccca]hhhhhhhh:dddd[ccc[cccooooooccc]cccddddCCC}CCC}EEEEEffffffmmmmffffff:::DDDD}A______BB}HHHHHHHHYYGGGGGGGdddd####ffffffffff	chr10:135085602-135085920(-)$1	318	9	270	355.5000

#DB
.)).))))))))).))))..........((((.(((((((((((..........))))))))))).)))).))).(((((((..((.((((((((..(................)..))))).....))).))..)))))))...(..(((((((....)))))))..)..((((((((.(((((.(.(((((((((((......)))))).)).))).).))))))))))))))).)))))))..)))).((((......	chr3:38173352-38173657(-)$1	1	40	301	355.5000
(((((.((((((((((......(.((((...(((((.((((((..((((((((.(........(((...(((((((((((.....((((.(.(((.(((........))).))).).)))))))))).)))))...)))).)))))))).((((.(((.(((......))).)))))))))).))).)))))((((((....))))))...)))).)......)).))))))))..)))))))((((....((((((((((	chr10:135085602-135085920(-)$1	1	9	270	355.5000

#PSSM
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
U : 0.50	a : 0.50	
U : 0.50	g : 0.50	
A : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
U : 0.50	u : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
U : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
U : 0.50	g : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
C : 0.50	a : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	a : 0.50	
U : 0.50	g : 0.50	
U : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	a : 0.50	
U : 0.50	a : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
U : 0.50	a : 0.50	
U : 0.50	g : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	

#score	711.0
#seq	2
#width	261
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_transcript_m2_run1.nuc.txt

#NT
UUG	chr2:63086279-63086526(+)$1	247	47	50	9.0000
uug	chr14:102549270-102549478(-)$1	208	55	58	9.0000
UUG	chr14:102476612-102476859(+)$1	247	55	58	9.0000
UUG	chr16:58579232-58579493(-)$1	261	87	90	9.0000
UUG	chr15:41756868-41757151(+)$1	283	67	70	9.0000
UUG	chr6:129939740-129940024(-)$1	284	36	39	9.0000
UUG	chr6:138751792-138752008(-)$1	216	161	164	9.0000
UUG	chr1:27108259-27108482(+)$1	223	32	35	9.0000
UUG	chr9:711715-711973(+)$1	258	90	93	9.0000
UUG	chr5:32390360-32390644(-)$1	284	3	6	9.0000
UUG	chr6:56491937-56492177(-)$1	240	57	60	9.0000
UUG	chr6:56437629-56437894(-)$1	265	18	21	9.0000
UUG	chr12:120587315-120587555(-)$1	240	26	29	9.0000
UUG	chrX:53564449-53564654(-)$1	205	80	83	9.0000
UUG	chr6:144832148-144832355(+)$1	207	6	9	9.0000
UUG	chr6:56397045-56397304(-)$1	259	8	11	9.0000
UUG	chr7:127630961-127631209(+)$1	248	41	44	9.0000
UUG	chrX:53611045-53611262(-)$1	217	156	159	9.0000
UUG	chr2:54884886-54885091(+)$1	205	154	157	9.0000
UUG	chr7:2403216-2403483(+)$1	267	33	36	9.0000
UUG	chr15:75684915-75685225(-)$1	310	8	11	9.0000
UUG	chr20:49508195-49508437(-)$1	242	7	10	9.0000
UUG	chr1:39893751-39894013(+)$1	262	4	7	9.0000
UUG	chr12:104335149-104335377(+)$1	228	8	11	9.0000
UUG	chr17:26947424-26947737(-)$1	313	54	57	9.0000
uug	chr2:102472476-102472701(+)$1	225	49	52	9.0000
UUG	chr6:44220702-44220916(+)$1	214	13	16	9.0000
UUG	chr9:134350839-134351133(+)$1	294	20	23	9.0000
UUG	chr20:8769189-8769465(+)$1	276	6	9	9.0000
UUG	chr2:96966635-96966858(-)$1	223	15	18	9.0000
UUG	chr12:49434210-49434438(-)$1	228	32	35	9.0000
UUG	chr4:3240099-3240399(+)$1	300	92	95	9.0000
UUG	chrX:41029186-41029425(+)$1	239	87	90	9.0000
UUG	chr1:203818738-203819059(+)$1	321	122	125	9.0000
UUG	chr16:8988305-8988530(-)$1	225	40	43	9.0000
UUG	chr5:140909077-140909317(-)$1	240	61	64	9.0000
UUG	chr2:39513885-39514205(-)$1	320	33	36	9.0000
UUG	chr14:31617852-31618096(-)$1	244	19	22	9.0000
UUG	chr6:56401504-56401814(-)$1	310	23	26	9.0000
UUG	chr12:133353127-133353440(-)$1	313	71	74	9.0000
UUG	chr17:78309893-78310170(+)$1	277	15	18	9.0000
UUG	chr8:48686733-48686991(-)$1	258	23	26	9.0000
UUG	chr8:17882997-17883267(+)$1	270	29	32	9.0000
UUG	chr7:91709307-91709569(+)$1	262	3	6	9.0000
UUG	chr7:5396449-5396667(-)$1	218	91	94	9.0000
UUG	chr7:5364730-5364978(-)$1	248	12	15	9.0000
UUG	chr6:56380189-56380455(-)$1	266	111	114	9.0000
UUG	chr12:6690221-6690438(-)$1	217	46	49	9.0000
UUG	chr14:21830852-21831104(-)$1	252	114	117	9.0000
UUG	chr17:27417787-27418030(-)$1	243	17	20	9.0000
UUG	chr14:56099851-56100160(+)$1	309	3	6	9.0000
UUG	chr17:37686863-37687172(+)$1	309	77	80	9.0000
UUG	chr14:95583858-95584184(-)$1	326	94	97	9.0000
UUG	chr1:10434900-10435197(+)$1	297	79	82	9.0000
UUG	chr2:183817746-183818008(-)$1	262	71	74	9.0000
UUG	chr1:39788219-39788470(+)$1	251	69	72	9.0000
UUG	chr13:98670733-98671021(+)$1	288	51	54	9.0000
UUG	chr17:75353096-75353340(+)$1	244	188	191	9.0000
UUG	chr2:183826785-183827082(-)$1	297	45	48	9.0000
UUG	chrX:53591928-53592137(-)$1	209	20	23	9.0000
UUG	chr17:16004650-16004996(-)$1	346	0	3	9.0000
UUG	chrX:24228291-24228615(+)$1	324	27	30	9.0000
UUG	chr2:54876919-54877158(+)$1	239	10	13	9.0000
UUG	chr14:102463436-102463681(+)$1	245	2	5	9.0000
UUG	chr5:154173258-154173523(+)$1	265	56	59	9.0000
UUG	chr14:31626282-31626528(-)$1	246	30	33	9.0000
UUG	chr20:39728679-39728948(+)$1	269	2	5	9.0000
uug	chr3:123366035-123366374(-)$1	339	31	34	9.0000
UUG	chr2:54843282-54843501(+)$1	219	33	36	9.0000
UUG	chr4:39324859-39325104(-)$1	245	48	51	9.0000
UUG	chr4:151604721-151604969(-)$1	248	6	9	9.0000
UUG	chr21:16337695-16337997(-)$1	302	39	42	9.0000
UUG	chr5:140950894-140951102(-)$1	208	61	64	9.0000
UUG	chr4:39352867-39353117(-)$1	250	11	14	9.0000
UUG	chr11:120327798-120328057(+)$1	259	18	21	9.0000
UUG	chr8:17868721-17868973(+)$1	252	14	17	9.0000
UUG	chr9:711846-712114(+)$1	268	208	211	9.0000
UUG	chr3:58140424-58140697(+)$1	273	21	24	9.0000
UUG	chr6:7576585-7576789(+)$1	204	60	63	9.0000
UUG	chr13:46549315-46549709(-)$1	394	190	193	9.0000
UUG	chr3:121415966-121416219(-)$1	253	102	105	9.0000
UUG	chr17:15964882-15965130(-)$1	248	5	8	9.0000
UUG	chr14:102452236-102452473(+)$1	237	40	43	9.0000
UUG	chr2:230659876-230660146(-)$1	270	39	42	9.0000
UUG	chr11:62288419-62288654(-)$1	235	21	24	9.0000
UUG	chr11:118363671-118363944(+)$1	273	54	57	9.0000
UUG	chr17:65850572-65850874(+)$1	302	10	13	9.0000
UUG	chr2:54135356-54135614(-)$1	258	14	17	9.0000
UUG	chr1:39926219-39926479(+)$1	260	13	16	9.0000
UUG	chr5:139905658-139905927(+)$1	269	12	15	9.0000
UUG	chr14:31572074-31572305(-)$1	231	5	8	9.0000
UUG	chr17:7400728-7400937(+)$1	209	34	37	9.0000
UUG	chr2:198353092-198353315(-)$1	223	10	13	9.0000
UUG	chr9:33295162-33295429(+)$1	267	127	130	9.0000
UUG	chr12:51072468-51072736(+)$1	268	92	95	9.0000
UUG	chr2:54856731-54856990(+)$1	259	244	247	9.0000
UUG	chr16:88643561-88643870(+)$1	309	81	84	9.0000

#otherMatches

#Struct PSSM
ee]	chr8:48826376-48826633(-)$1	257	72	75	9.0000
FFF	chr2:63086279-63086526(+)$1	247	47	50	9.0000
E{F	chr14:102549270-102549478(-)$1	208	55	58	9.0000
ggg	chr14:102476612-102476859(+)$1	247	55	58	9.0000
777	chr16:58579232-58579493(-)$1	261	87	90	9.0000
"""	chr15:41756868-41757151(+)$1	283	67	70	9.0000
GGG	chr6:129939740-129940024(-)$1	284	36	39	9.0000
fff	chr6:138751792-138752008(-)$1	216	161	164	9.0000
::e	chr1:27108259-27108482(+)$1	223	32	35	9.0000
cnn	chr9:711715-711973(+)$1	258	90	93	9.0000
:::	chr5:32390360-32390644(-)$1	284	3	6	9.0000
qqq	chr6:56491937-56492177(-)$1	240	57	60	9.0000
HHH	chr6:56437629-56437894(-)$1	265	18	21	9.0000
dd!	chr12:120587315-120587555(-)$1	240	26	29	9.0000
cc:	chrX:53564449-53564654(-)$1	205	80	83	9.0000
KKD	chr6:144832148-144832355(+)$1	207	6	9	9.0000
ee[	chr6:56397045-56397304(-)$1	259	8	11	9.0000
KKB	chr7:127630961-127631209(+)$1	248	41	44	9.0000
III	chrX:53611045-53611262(-)$1	217	156	159	9.0000
eee	chr2:54884886-54885091(+)$1	205	154	157	9.0000
:::	chr7:2403216-2403483(+)$1	267	33	36	9.0000
HHH	chr15:75684915-75685225(-)$1	310	8	11	9.0000
cc[	chr20:49508195-49508437(-)$1	242	7	10	9.0000
:::	chr1:39893751-39894013(+)$1	262	4	7	9.0000
cnn	chr12:104335149-104335377(+)$1	228	8	11	9.0000
ggg	chr17:26947424-26947737(-)$1	313	54	57	9.0000
yyy	chr2:102472476-102472701(+)$1	225	49	52	9.0000
qqq	chr6:44220702-44220916(+)$1	214	13	16	9.0000
333	chr9:134350839-134351133(+)$1	294	20	23	9.0000
:DD	chr20:8769189-8769465(+)$1	276	6	9	9.0000
FFF	chr2:96966635-96966858(-)$1	223	15	18	9.0000
::C	chr12:49434210-49434438(-)$1	228	32	35	9.0000
Jcc	chr4:3240099-3240399(+)$1	300	92	95	9.0000
:::	chrX:41029186-41029425(+)$1	239	87	90	9.0000
eee	chr1:203818738-203819059(+)$1	321	122	125	9.0000
ddd	chr16:8988305-8988530(-)$1	225	40	43	9.0000
iii	chr5:140909077-140909317(-)$1	240	61	64	9.0000
:dd	chr2:39513885-39514205(-)$1	320	33	36	9.0000
ggp	chr14:31617852-31618096(-)$1	244	19	22	9.0000
ggg	chr6:56401504-56401814(-)$1	310	23	26	9.0000
GG{	chr12:133353127-133353440(-)$1	313	71	74	9.0000
fff	chr17:78309893-78310170(+)$1	277	15	18	9.0000
nff	chr8:48686733-48686991(-)$1	258	23	26	9.0000
rrr	chr8:17882997-17883267(+)$1	270	29	32	9.0000
dd!	chr7:91709307-91709569(+)$1	262	3	6	9.0000
ppp	chr7:5396449-5396667(-)$1	218	91	94	9.0000
''e	chr7:5364730-5364978(-)$1	248	12	15	9.0000
::c	chr6:56380189-56380455(-)$1	266	111	114	9.0000
QQQ	chr12:6690221-6690438(-)$1	217	46	49	9.0000
ppg	chr14:21830852-21831104(-)$1	252	114	117	9.0000
EMM	chr17:27417787-27418030(-)$1	243	17	20	9.0000
JJJ	chr14:56099851-56100160(+)$1	309	3	6	9.0000
c]b	chr17:37686863-37687172(+)$1	309	77	80	9.0000
ggg	chr14:95583858-95584184(-)$1	326	94	97	9.0000
""d	chr1:10434900-10435197(+)$1	297	79	82	9.0000
bb2	chr2:183817746-183818008(-)$1	262	71	74	9.0000
ddd	chr1:39788219-39788470(+)$1	251	69	72	9.0000
ooo	chr13:98670733-98671021(+)$1	288	51	54	9.0000
dd5	chr17:75353096-75353340(+)$1	244	188	191	9.0000
wwd	chr2:183826785-183827082(-)$1	297	45	48	9.0000
nnc	chrX:53591928-53592137(-)$1	209	20	23	9.0000
:EE	chr17:16004650-16004996(-)$1	346	0	3	9.0000
ddd	chrX:24228291-24228615(+)$1	324	27	30	9.0000
:::	chr2:54876919-54877158(+)$1	239	10	13	9.0000
:::	chr14:102463436-102463681(+)$1	245	2	5	9.0000
##c	chr5:154173258-154173523(+)$1	265	56	59	9.0000
eee	chr14:31626282-31626528(-)$1	246	30	33	9.0000
GGG	chr20:39728679-39728948(+)$1	269	2	5	9.0000
b[e	chr3:123366035-123366374(-)$1	339	31	34	9.0000
GGG	chr2:54843282-54843501(+)$1	219	33	36	9.0000
!!d	chr4:39324859-39325104(-)$1	245	48	51	9.0000
:BB	chr4:151604721-151604969(-)$1	248	6	9	9.0000
EEE	chr21:16337695-16337997(-)$1	302	39	42	9.0000
mdd	chr5:140950894-140951102(-)$1	208	61	64	9.0000
JJJ	chr4:39352867-39353117(-)$1	250	11	14	9.0000
mmc	chr11:120327798-120328057(+)$1	259	18	21	9.0000
iii	chr8:17868721-17868973(+)$1	252	14	17	9.0000
eee	chr9:711846-712114(+)$1	268	208	211	9.0000
ffI	chr3:58140424-58140697(+)$1	273	21	24	9.0000
[dd	chr6:7576585-7576789(+)$1	204	60	63	9.0000
ccc	chr13:46549315-46549709(-)$1	394	190	193	9.0000
ddd	chr3:121415966-121416219(-)$1	253	102	105	9.0000
DDD	chr17:15964882-15965130(-)$1	248	5	8	9.0000
Iee	chr14:102452236-102452473(+)$1	237	40	43	9.0000
"""	chr2:230659876-230660146(-)$1	270	39	42	9.0000
dd(	chr11:62288419-62288654(-)$1	235	21	24	9.0000
III	chr11:118363671-118363944(+)$1	273	54	57	9.0000
:CC	chr17:65850572-65850874(+)$1	302	10	13	9.0000
GGG	chr2:54135356-54135614(-)$1	258	14	17	9.0000
ggg	chr1:39926219-39926479(+)$1	260	13	16	9.0000
e[d	chr5:139905658-139905927(+)$1	269	12	15	9.0000
FFF	chr14:31572074-31572305(-)$1	231	5	8	9.0000
BB{	chr17:7400728-7400937(+)$1	209	34	37	9.0000
FHH	chr2:198353092-198353315(-)$1	223	10	13	9.0000
eee	chr9:33295162-33295429(+)$1	267	127	130	9.0000
eee	chr12:51072468-51072736(+)$1	268	92	95	9.0000
eee	chr2:54856731-54856990(+)$1	259	244	247	9.0000
ccc	chr16:88643561-88643870(+)$1	309	81	84	9.0000

#DB
)).	chr8:48826376-48826633(-)$1	1	72	75	9.0000
(((	chr2:63086279-63086526(+)$1	1	47	50	9.0000
(.(	chr14:102549270-102549478(-)$1	1	55	58	9.0000
)))	chr14:102476612-102476859(+)$1	1	55	58	9.0000
...	chr16:58579232-58579493(-)$1	1	87	90	9.0000
...	chr15:41756868-41757151(+)$1	1	67	70	9.0000
(((	chr6:129939740-129940024(-)$1	1	36	39	9.0000
)))	chr6:138751792-138752008(-)$1	1	161	164	9.0000
..(	chr1:27108259-27108482(+)$1	1	32	35	9.0000
(..	chr9:711715-711973(+)$1	1	90	93	9.0000
...	chr5:32390360-32390644(-)$1	1	3	6	9.0000
...	chr6:56491937-56492177(-)$1	1	57	60	9.0000
(((	chr6:56437629-56437894(-)$1	1	18	21	9.0000
((.	chr12:120587315-120587555(-)$1	1	26	29	9.0000
)).	chrX:53564449-53564654(-)$1	1	80	83	9.0000
..(	chr6:144832148-144832355(+)$1	1	6	9	9.0000
((.	chr6:56397045-56397304(-)$1	1	8	11	9.0000
..(	chr7:127630961-127631209(+)$1	1	41	44	9.0000
)))	chrX:53611045-53611262(-)$1	1	156	159	9.0000
(((	chr2:54884886-54885091(+)$1	1	154	157	9.0000
...	chr7:2403216-2403483(+)$1	1	33	36	9.0000
(((	chr15:75684915-75685225(-)$1	1	8	11	9.0000
((.	chr20:49508195-49508437(-)$1	1	7	10	9.0000
...	chr1:39893751-39894013(+)$1	1	4	7	9.0000
(..	chr12:104335149-104335377(+)$1	1	8	11	9.0000
)))	chr17:26947424-26947737(-)$1	1	54	57	9.0000
...	chr2:102472476-102472701(+)$1	1	49	52	9.0000
...	chr6:44220702-44220916(+)$1	1	13	16	9.0000
...	chr9:134350839-134351133(+)$1	1	20	23	9.0000
.((	chr20:8769189-8769465(+)$1	1	6	9	9.0000
(((	chr2:96966635-96966858(-)$1	1	15	18	9.0000
..(	chr12:49434210-49434438(-)$1	1	32	35	9.0000
(((	chr4:3240099-3240399(+)$1	1	92	95	9.0000
...	chrX:41029186-41029425(+)$1	1	87	90	9.0000
(((	chr1:203818738-203819059(+)$1	1	122	125	9.0000
(((	chr16:8988305-8988530(-)$1	1	40	43	9.0000
)))	chr5:140909077-140909317(-)$1	1	61	64	9.0000
.((	chr2:39513885-39514205(-)$1	1	33	36	9.0000
((.	chr14:31617852-31618096(-)$1	1	19	22	9.0000
(((	chr6:56401504-56401814(-)$1	1	23	26	9.0000
((.	chr12:133353127-133353440(-)$1	1	71	74	9.0000
)))	chr17:78309893-78310170(+)$1	1	15	18	9.0000
.))	chr8:48686733-48686991(-)$1	1	23	26	9.0000
...	chr8:17882997-17883267(+)$1	1	29	32	9.0000
((.	chr7:91709307-91709569(+)$1	1	3	6	9.0000
...	chr7:5396449-5396667(-)$1	1	91	94	9.0000
..(	chr7:5364730-5364978(-)$1	1	12	15	9.0000
..(	chr6:56380189-56380455(-)$1	1	111	114	9.0000
...	chr12:6690221-6690438(-)$1	1	46	49	9.0000
..)	chr14:21830852-21831104(-)$1	1	114	117	9.0000
(..	chr17:27417787-27418030(-)$1	1	17	20	9.0000
(((	chr14:56099851-56100160(+)$1	1	3	6	9.0000
).)	chr17:37686863-37687172(+)$1	1	77	80	9.0000
(((	chr14:95583858-95584184(-)$1	1	94	97	9.0000
..(	chr1:10434900-10435197(+)$1	1	79	82	9.0000
)).	chr2:183817746-183818008(-)$1	1	71	74	9.0000
)))	chr1:39788219-39788470(+)$1	1	69	72	9.0000
...	chr13:98670733-98671021(+)$1	1	51	54	9.0000
)).	chr17:75353096-75353340(+)$1	1	188	191	9.0000
..)	chr2:183826785-183827082(-)$1	1	45	48	9.0000
..)	chrX:53591928-53592137(-)$1	1	20	23	9.0000
.((	chr17:16004650-16004996(-)$1	1	0	3	9.0000
)))	chrX:24228291-24228615(+)$1	1	27	30	9.0000
...	chr2:54876919-54877158(+)$1	1	10	13	9.0000
...	chr14:102463436-102463681(+)$1	1	2	5	9.0000
..(	chr5:154173258-154173523(+)$1	1	56	59	9.0000
)))	chr14:31626282-31626528(-)$1	1	30	33	9.0000
(((	chr20:39728679-39728948(+)$1	1	2	5	9.0000
(.(	chr3:123366035-123366374(-)$1	1	31	34	9.0000
(((	chr2:54843282-54843501(+)$1	1	33	36	9.0000
..(	chr4:39324859-39325104(-)$1	1	48	51	9.0000
.((	chr4:151604721-151604969(-)$1	1	6	9	9.0000
(((	chr21:16337695-16337997(-)$1	1	39	42	9.0000
.))	chr5:140950894-140951102(-)$1	1	61	64	9.0000
(((	chr4:39352867-39353117(-)$1	1	11	14	9.0000
..)	chr11:120327798-120328057(+)$1	1	18	21	9.0000
(((	chr8:17868721-17868973(+)$1	1	14	17	9.0000
(((	chr9:711846-712114(+)$1	1	208	211	9.0000
))(	chr3:58140424-58140697(+)$1	1	21	24	9.0000
.((	chr6:7576585-7576789(+)$1	1	60	63	9.0000
(((	chr13:46549315-46549709(-)$1	1	190	193	9.0000
(((	chr3:121415966-121416219(-)$1	1	102	105	9.0000
(((	chr17:15964882-15965130(-)$1	1	5	8	9.0000
(((	chr14:102452236-102452473(+)$1	1	40	43	9.0000
...	chr2:230659876-230660146(-)$1	1	39	42	9.0000
((.	chr11:62288419-62288654(-)$1	1	21	24	9.0000
(((	chr11:118363671-118363944(+)$1	1	54	57	9.0000
.((	chr17:65850572-65850874(+)$1	1	10	13	9.0000
(((	chr2:54135356-54135614(-)$1	1	14	17	9.0000
(((	chr1:39926219-39926479(+)$1	1	13	16	9.0000
(.(	chr5:139905658-139905927(+)$1	1	12	15	9.0000
(((	chr14:31572074-31572305(-)$1	1	5	8	9.0000
((.	chr17:7400728-7400937(+)$1	1	34	37	9.0000
(((	chr2:198353092-198353315(-)$1	1	10	13	9.0000
(((	chr9:33295162-33295429(+)$1	1	127	130	9.0000
(((	chr12:51072468-51072736(+)$1	1	92	95	9.0000
)))	chr2:54856731-54856990(+)$1	1	244	247	9.0000
)))	chr16:88643561-88643870(+)$1	1	81	84	9.0000

#PSSM
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	

#score	882.0000000000002
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_UTR_m1_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
::::DDDDKKDDDDKKBB{A{BB{DDDD:ffffff"""ffffff"""ddddqqqqqqqqdddd4444ffffffffffffffffffmmmmffffff:::::::::fffffflllffffff::DDDDBB}ABBDDDDYYDDDD:::::::::a[gggggggccc"""cccpppppppccc333ccc]ggggggg]a::::::dddd[bb[gggggggmmmmggggggg]b	chr12:53434480-53434723(+)$1	243	1	229	684.0000

#DB
....((((..((((..((.(.((.((((.((((((...((((((...((((........))))....))))))))))))((((((....)))))).........((((((...))))))..)))))).)))))))..)))).........(.((((((((((...(((.......)))...))).))))))).)......((((.((.(((((((....))))))).)	chr12:53434480-53434723(+)$1	1	1	229	684.0000

#PSSM
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	

#score	684.0
#seq	1
#width	228
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_CDS_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
Feeeee[eeeee"""eeeeennnnneeeee4444eeeee]eeeee::::::::::::::::::::ddddmmmmdddd::::FFFFFFZZZCCC:::::::dddd[ccc!!cccooooooccc22ccc]dddd::hhhhhhhh''''''''dddd[bbccc"""eeeee!!ccc[ccc[eeeee"""eeeee$$$$$hhhhhhhhzzzzzzzzzzzzzzzzzhhhhhhhh22eeeeeeeeee333cccccc22eeeee333ccc]bb22ddddhhhhhhhh:::::::	chr3:10360782-10361102(-)$1	320	25	312	861.0000

#DB
((((((.(((((...(((((.....)))))....))))).)))))....................((((....))))....))))))...))).......((((.(((..(((......)))..))).))))..((((((((........((((.(((((...(((((..(((.(((.(((((...(((((.....((((((((.................))))))))..))))))))))...))))))..)))))...))).))..)))))))))))).......	chr3:10360782-10361102(-)$1	1	25	312	861.0000

#PSSM
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	

#score	861.0
#seq	1
#width	287
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_transcript_m1_run1.nuc.txt

#NT
uguauguguguuugugugugugugugugugugugugugugugugGUGGG	chr7:157176218-157176475(+)$1	257	75	124	103.9491
GgugugugugugugugugugugugugugugugugugugugugugGAUGG	chr6:31703288-31703667(-)$1	379	39	88	114.1186
uguguguguguguguguguguguguguguguauguauguAUAGGUCGGG	chr9:100689300-100689559(-)$1	259	78	127	94.2033
ugugugugugugugugugugucugugugugugugugugugugugugugu	chr8:9630264-9630530(+)$1	266	55	104	122.1694
uguguguguguguguuugugugugugugugugugugagagagagagaga	chr8:128923012-128923299(+)$1	287	111	160	94.0338
GGAgugugugugugugugugugugugugugugugugugugugugugugu	chr7:127347699-127347958(+)$1	259	118	167	121.6610
uguguggaugugugugagugugagugggugugcgugugaguguguguga	chr8:41685052-41685338(-)$1	286	80	129	94.0338
uguguguguguguguguguguguguguguguguaugaaagugugugugu	chr2:24812435-24812708(+)$1	273	65	114	108.7796
ugugugugugugugugugugugugugugugugugugugugugugugugu	chr5:96366223-96366515(+)$1	292	101	150	126.9152
CAGCugugugugugugugugugugaguguguguguguguguuugugugc	chr3:51702027-51702320(+)$1	293	50	99	102.5932
GGGccgucucugugugugugugugugugugugugugugugugugugugC	chr3:129113401-129113640(-)$1	239	58	107	103.9491
uguguguaugugugugugugugugugugugugugugugugugugugugu	chr9:74763115-74763413(+)$1	298	102	151	122.6779
ugugugugugugugugugugugugugugugugugugugugugugugugu	chr22:24439101-24439400(+)$1	299	165	214	126.9152
AGAguguguguguguguguguguguguguguguguguguguguguAGGA	chr3:50651788-50652111(+)$1	323	140	189	110.8135
UUugugugugugugugugugugugugugugugugugugugugugugugG	chr10:70398412-70398715(+)$1	303	108	157	121.2372
UGGGUGGCugugugugugugugugugugugugugugugugugugugugu	chr8:143748670-143749015(-)$1	345	116	165	116.0677
ugugugugugugugugugugugugugugugugugugugugugugugugu	chrX:31452374-31452671(-)$1	297	80	129	126.9152
ugcaugagugugugugcgugugugugugugcaugcgugugugugugugc	chr7:2604835-2605081(+)$1	246	20	69	95.6440
UUCgugugcguguguguguguguguguguguguguguguguguACUUGG	chr17:3839867-3840125(-)$1	258	67	116	101.9999
uguguguguguguguguguguguguguguguguguguguuugugugugu	chr3:184037072-184037352(+)$1	280	143	192	122.3389
UGAgugugugugugugugugugugugugugugugugugugugcgugugu	chr5:61739148-61739404(+)$1	256	58	107	120.2203
UGGGGGGgugugugugugugugugugugugugugugugugugugugugu	chr17:44183077-44183439(-)$1	362	118	167	116.4067
ugugugugugugugugugugugugugugugugugugugugugAGAGAGA	chr11:95809450-95809816(-)$1	366	178	227	112.2542
CCCgugugugugugugugugugugugugugugugugugugugugugugC	chr22:26122812-26123082(+)$1	270	64	113	115.9830
CGGGCgugugugugugugugugugugugugugugugugugugugugugu	chr1:19796120-19796424(-)$1	304	140	189	117.9322
agagagagagagagugugugugugugugugugugugugugugugugugu	chr7:77561747-77562094(+)$1	347	178	227	99.5423
uguguguguguguguguguguguguguguguguguguguucgcgcgcgc	chr11:3860576-3860849(-)$1	273	95	144	103.8644
uuugugugugugugugugugugugugugugugugugugugugugugugu	chr9:37296790-37297052(+)$1	262	86	135	123.1864
ugugaaugcgugugugaaugugugugugugugaaugugugugugugugG	chr2:236420634-236420957(+)$1	323	81	130	94.8813
CCAguguguguguguguguguguguguguguguguguguguguUUUucg	chr2:171878440-171878710(-)$1	270	71	120	103.0169
ugugugugggugugugaaugugugugggugugugaauguggguguguga	chr2:240190652-240190917(-)$1	265	6	55	93.3559
UCugugugugugugugugugugugugugugugugugugugugugugugu	chr16:23478648-23478875(-)$1	227	118	167	123.2711
AGGGGgugugugugugugugugugugugugugugugugugugugugugu	chr19:50163079-50163408(-)$1	329	118	167	117.4237
GGUGUUGUUCGgugugugugugugugugugugugugugugugugugugu	chr7:4810437-4810694(+)$1	257	47	96	102.7627
ugugugugugugugugugugugugugugugugugugugugugugugugu	chr10:80925653-80925911(+)$1	258	52	101	126.9152
cgugccugugugugugcguguguguguacgugugugugggugugugugc	chr16:355969-356274(-)$1	305	79	128	96.0677
UAUAUAugcgugugugugugugugugugugugugugugugugugugcgc	chr19:5056972-5057260(+)$1	288	59	108	104.6271
ggcuaguuugugugugugugugugugugugugugugugugugugugugu	chr2:74403069-74403375(-)$1	306	116	165	109.3728
UUCgugugcguguguguguguguguguguguguguguguguguACUUGG	chr17:3839925-3840159(-)$1	234	101	150	101.9999
ugugugugugugugugugugugugugugugugugugugugugugugugu	chr14:58885971-58886294(-)$1	323	71	120	126.9152
ugugugugugugugugugugugugugugugugugugugugugugugugu	chr15:66720534-66720822(+)$1	288	76	125	126.9152
GGGccgucucugugugugugugugugugugugugugugugugugugugC	chr3:129113503-129113731(-)$1	228	149	198	103.9491
CgugugugugugugugugugugugugugugugugugugugugugugugA	chr8:48739488-48739824(-)$1	336	97	146	122.1694
GGACuguguccgugugugugugugugugugugugugugugugCCUCUGG	chr7:1978318-1978581(-)$1	263	63	112	94.7118
GCugugugugugugugugugugugugugugugugugugugugugugugC	chr17:34045240-34045520(+)$1	280	89	138	118.9491
ugugugugugugugugugugugugugugugugugugugugugugugugu	chr19:18620248-18620533(-)$1	285	66	115	126.9152
ugugugugugugugugugugugugugugugugugugugugugugugugu	chr10:65044470-65044743(-)$1	273	76	125	126.9152
UGAgugugugugugcaugugugugugugugugugugugugugugugugu	chr7:92243871-92244135(-)$1	264	76	125	114.6271
ugugugugugugugugugugugugugugugugugugugugugugugugu	chr18:34374642-34374985(-)$1	343	141	190	126.9152
ugugugugugugugugugugcgugugcauguguguaugugugugugugA	chr19:28915053-28915296(-)$1	243	25	74	106.3220
uguguguguaugcgugugugugugugugugugugugugugugugugugu	chrX:44758286-44758594(+)$1	308	171	220	117.8474
uguguguguguguguguguguguguguguguguguguguguguaucugu	chr21:36351060-36351399(-)$1	339	122	171	118.7796
ugugugugugugugugugugugugugugugugugugugugugugugugu	chr11:63911168-63911423(-)$1	255	149	198	126.9152
ugugagugugcgugugugugcaccugugugugugugugugugugugugu	chr20:33153493-33153725(-)$1	232	162	211	99.7118
GguguguguguguguguguguguguguguguguguguACGCACAUGUGU	chr11:93454763-93454993(+)$1	230	67	116	98.1864
Cgugugugugugugugugugugugugugugugugugugugugugugugu	chr9:131570549-131570806(+)$1	257	137	186	124.2881
CCGAGACguguguguguguguguguguguguguguguguguguguguCC	chr7:150809408-150809673(+)$1	265	68	117	95.2203
ugugugugugugcaugcaugugugugugugugcaugugugcgugugugC	chr17:72912784-72913099(-)$1	315	84	133	93.7796

#otherMatches

#Struct PSSM
nnnbb]bb]a]bb333ggggggg]bb::::::::::::::::::::eee	chr12:122459753-122459987(+)$1	234	69	118	118.1864
fffff!!bb[bb[bb!!bb[a[ccc####dddd[ccc"""ggggggg##	chr7:157176218-157176475(+)$1	257	75	124	103.9491
C{A{ALLLA{A{CCC{BB{BB{A{A{A{ANNNNNCCC{A{EEEEE{CCC	chr6:31703288-31703667(-)$1	379	39	88	114.1186
oeeeee4444ccc]ffffff]ccc]bb]a666666dddd]bb22bb777	chr9:100689300-100689559(-)$1	259	78	127	94.2033
FFFRRRRRRRRRCCC{A{A{CCC{CCC{A{FFFFFF:::::::ffffff	chr8:9630264-9630530(+)$1	266	55	104	122.1694
ffff[eeeee[bb[ccc[a[a[a[a[a[a[annnnna]a]a]a]a]a]a	chr8:128923012-128923299(+)$1	287	111	160	94.0338
88888888ccc4444bb333eeeee]ccc55555ccc]bb]bb22====	chr7:127347699-127347958(+)$1	259	118	167	121.6610
gooooooggggggg:eeeee$$$$$ffffff$$$$$ccc[a[bb[bb++	chr8:41685052-41685338(-)$1	286	80	129	94.0338
{CCC:::::::::::::ccc[=================uuuuuuuuuuu	chr2:24812435-24812708(+)$1	273	65	114	108.7796
cc####ccc[dddd[bb[bb[dddd[dddd[a[ccc"""bb[a[bb[ff	chr5:96366223-96366515(+)$1	292	101	150	126.9152
II{A:::::::::::=============[bbyyyyyyyyyyyyyyyybb	chr3:51702027-51702320(+)$1	293	50	99	102.5932
GGGKKHHHHHHHH::::::::::::::::::::::::::::::::::hh	chr3:129113401-129113640(-)$1	239	58	107	103.9491
$$$$ccc[eeeee[ccc&&&&&&&ccc[eeeee"""a!!bb$$$$$a[c	chr9:74763115-74763413(+)$1	298	102	151	122.6779
:::::::::::::::::::::::::::::::::::::::::::::::::	chr22:24439101-24439400(+)$1	299	165	214	126.9152
3ccc22hhhhhhhh]cccDDDDYYCCC}BB}CCC}A}A}CCC}EEEEE:	chr3:50651788-50652111(+)$1	323	140	189	110.8135
EKKEEEEE{DDDD:::::::::::::::::::::::::::bb!!fffff	chr10:70398412-70398715(+)$1	303	108	157	121.2372
:HHHHHHHH::::::::::::::::::::::::::::::::::::::::	chr8:143748670-143749015(-)$1	345	116	165	116.0677
na]bb]a333ggggggg]a]bb]ccc]dddd]a]eeeee==========	chrX:31452374-31452671(-)$1	297	80	129	126.9152
hhhhhoooooohhhhhhhh::::::==========oooooo========	chr7:2604835-2605081(+)$1	246	20	69	95.6440
hhh[a[a[ccc!!bb[dddd[eeeee$$$$$a[a[==========!!cc	chr17:3839867-3840125(-)$1	258	67	116	101.9999
}A~~~~EEEEE}CCC}A|||||||DDDDZZZBB?????JJJJJJJJJJJ	chr3:184037072-184037352(+)$1	280	143	192	122.3389
2ccc999999999eeeee22ccc55555cccbb"""ccc!!eeeee!!b	chr5:61739148-61739404(+)$1	256	58	107	120.2203
iiiiiiiii666666ccc]ffffff:::::ccc[bb[bb[bb[a[a[hh	chr17:44183077-44183439(-)$1	362	118	167	116.4067
ggg]ccc:::a[dddd!!bb!!a[hhhhhhhhdddd[ggggggg[bb!!	chr11:95809450-95809816(-)$1	366	178	227	112.2542
nnnnndddd]bb]ccc]bb]bb]ccc]dddda!!dddd[ddddmmmmdd	chr22:26122812-26123082(+)$1	270	64	113	115.9830
IIIIII______EEEEE::::::::::::::::::::::::::::::::	chr1:19796120-19796424(-)$1	304	140	189	117.9322
:::bb####bb[ffffff[bb!!a[ccc[eeeee!!ccc####iiiiii	chr7:77561747-77562094(+)$1	347	178	227	99.5423
>>>>>>>>>>>eeeee]ccc88888888==========22iiiiiiiii	chr11:3860576-3860849(-)$1	273	95	144	103.8644
ooobb22eeeee]ccc]hhhhhhhh]dddd:EEEEE{BBDDDDCCC:bb	chr9:37296790-37297052(+)$1	262	86	135	123.1864
)))))ffffffooooooffffff0000000000==========>>>>>>	chr2:236420634-236420957(+)$1	323	81	130	94.8813
DDDD{EEEEE{CCC{HHHHHHHH{DDDD::::::::::::::::::::b	chr2:171878440-171878710(-)$1	270	71	120	103.0169
::::::::::::::::::::::::::CCC::::::eeeee[ffffff!!	chr2:240190652-240190917(-)$1	265	6	55	93.3559
[a^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^a]dddd]ccc6666	chr16:23478648-23478875(-)$1	227	118	167	123.2711
[ffffff[dddd[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:50163079-50163408(-)$1	329	118	167	117.4237
dddiiiiiiiii::::::dddd"""ccc(((((((((a[dddd"""ddd	chr7:4810437-4810694(+)$1	257	47	96	102.7627
2ccc55555ccc:GGGGGGG{CCC{CCC{A{A{BBBB{A{BB{A{EEEE	chr10:80925653-80925911(+)$1	258	52	101	126.9152
eGGGGGGG?????EEEEE}EEEEE:::::::==========oooooo==	chr16:355969-356274(-)$1	305	79	128	96.0677
ppccc]ggggggg]eeeee]ccc================oooooo====	chr19:5056972-5057260(+)$1	288	59	108	104.6271
!bboooooobb22a]eeeee]ccc]bb22dddd]ccc::::::::::::	chr2:74403069-74403375(-)$1	306	116	165	109.3728
EE:::eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee::ee	chr17:3839925-3840159(-)$1	234	101	150	101.9999
CCKKBB{EEEEE{DDDD{EEEEE{DDDD:::::bb[bb[a"""ccc[a[	chr14:58885971-58886294(-)$1	323	71	120	126.9152
ccc]bb]bb]a]ccc]a]a]bb]ccc:::::::::::::::::::::::	chr15:66720534-66720822(+)$1	288	76	125	126.9152
eeee]hhhhhhhh::::::::::::::::::::::::::::::::::JJ	chr3:129113503-129113731(-)$1	228	149	198	103.9491
c[ffffff[ccc[ccc[dddd''''''''bb[a[a[ffffff[dddd%%	chr8:48739488-48739824(-)$1	336	97	146	122.1694
ffffff:::::::::::::::::::::::::::::::::::ccc"""cc	chr7:1978318-1978581(-)$1	263	63	112	94.7118
eeee]bbHHHHHHHH::CCCLLLHHHHHHHHdddd[bb[ccc"""bb[b	chr17:34045240-34045520(+)$1	280	89	138	118.9491
FFFF{CCC:::::::::::::::::::======================	chr19:18620248-18620533(-)$1	285	66	115	126.9152
DDDD{CCC{BBKKA{BB{CCC{AKKA::::::::::ffffff"""dddd	chr10:65044470-65044743(-)$1	273	76	125	126.9152
EEEE:::::CCC{CCC{DDDD{CCC::::::::::::::::::::::::	chr7:92243871-92244135(-)$1	264	76	125	114.6271
qccc:::dddd[a[a!!a[a[ggggggg"""bb!!dddd[dddd[bboo	chr18:34374642-34374985(-)$1	343	141	190	126.9152
{CCC{BB{A::::::::::iiiiiiiiimmmmiiiiiiiii::::dddd	chr19:28915053-28915296(-)$1	243	25	74	106.3220
((((((((ffffff^^^^^^^^^^^^^^^^^^^^^^^^ffffff88888	chrX:44758286-44758594(+)$1	308	171	220	117.8474
eee[eeeee[ccc$$$$$a[a[ccc[ccc%%%%%%bb&&&&&&&ddddb	chr21:36351060-36351399(-)$1	339	122	171	118.7796
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:63911168-63911423(-)$1	255	149	198	126.9152
GGG}BBZZZFFFFFF}GGGGGGGAEEEEE}CCC:::::::::::a[ddd	chr20:33153493-33153725(-)$1	232	162	211	99.7118
nffffff]a333ccc7777777ccchhhhhhhhmmmmhhhhhhhh:ddd	chr11:93454763-93454993(+)$1	230	67	116	98.1864
B}DDDD}A}CCC}BB~~~~DDDD::::::::ccc[a[a[a[ccc[a[a[	chr9:131570549-131570806(+)$1	257	137	186	124.2881
LLDDDDBB{CCC{A{CCC:::::::::::::bb[===========nnnn	chr7:150809408-150809673(+)$1	265	68	117	95.2203
======================[ddddmmmmdddd333===========	chr17:72912784-72913099(-)$1	315	84	133	93.7796

#DB
...)).)).).))...))))))).))....................(((	chr12:122459753-122459987(+)$1	1	69	118	118.1864
(((((..((.((.((..((.(.(((....((((.(((...(((((((..	chr7:157176218-157176475(+)$1	1	75	124	103.9491
(.(.(...(.(.(((.((.((.(.(.(.(.....(((.(.(((((.(((	chr6:31703288-31703667(-)$1	1	39	88	114.1186
.)))))....))).)))))).))).)).)......)))).))..))...	chr9:100689300-100689559(-)$1	1	78	127	94.2033
(((.........(((.(.(.(((.(((.(.((((((.......((((((	chr8:9630264-9630530(+)$1	1	55	104	122.1694
((((.(((((.((.(((.(.(.(.(.(.(.(.....).).).).).).)	chr8:128923012-128923299(+)$1	1	111	160	94.0338
........)))....))...))))).))).....))).)).))..))))	chr7:127347699-127347958(+)$1	1	118	167	121.6610
(......))))))).(((((.....((((((.....(((.(.((.((..	chr8:41685052-41685338(-)$1	1	80	129	94.0338
.(((.............(((.(((((((((((((((((...........	chr2:24812435-24812708(+)$1	1	65	114	108.7796
((....(((.((((.((.((.((((.((((.(.(((...((.(.((.((	chr5:96366223-96366515(+)$1	1	101	150	126.9152
((.(...........(((((((((((((.((................))	chr3:51702027-51702320(+)$1	1	50	99	102.5932
(((..((((((((..................................((	chr3:129113401-129113640(-)$1	1	58	107	103.9491
....(((.(((((.(((.......(((.(((((...(..((.....(.(	chr9:74763115-74763413(+)$1	1	102	151	122.6779
.................................................	chr22:24439101-24439400(+)$1	1	165	214	126.9152
.)))..)))))))).)))))))..))).)).))).).).))).))))).	chr3:50651788-50652111(+)$1	1	140	189	110.8135
(..(((((.((((...........................((..(((((	chr10:70398412-70398715(+)$1	1	108	157	121.2372
.((((((((........................................	chr8:143748670-143749015(-)$1	1	116	165	116.0677
.).)).)...))))))).).)).))).)))).).)))))((((((((((	chrX:31452374-31452671(-)$1	1	80	129	126.9152
(((((......))))))))......((((((((((......))))))))	chr7:2604835-2605081(+)$1	1	20	69	95.6440
(((.(.(.(((..((.((((.(((((.....(.(.((((((((((..((	chr17:3839867-3840125(-)$1	1	67	116	101.9999
.)....))))).))).).......))))...)).....)))))))))))	chr3:184037072-184037352(+)$1	1	143	192	122.3389
.))).........)))))..))).....)))((...(((..(((((..(	chr5:61739148-61739404(+)$1	1	58	107	120.2203
)))))))))......))).)))))).....(((.((.((.((.(.(.((	chr17:44183077-44183439(-)$1	1	118	167	116.4067
))).)))...(.((((..((..(.((((((((((((.(((((((.((..	chr11:95809450-95809816(-)$1	1	178	227	112.2542
.....)))).)).))).)).)).))).))))(..((((.((((....))	chr22:26122812-26123082(+)$1	1	64	113	115.9830
))))))......)))))................................	chr1:19796120-19796424(-)$1	1	140	189	117.9322
...((....((.((((((.((..(.(((.(((((..(((....((((((	chr7:77561747-77562094(+)$1	1	178	227	99.5423
...........))))).)))........))))))))))..)))))))))	chr11:3860576-3860849(-)$1	1	95	144	103.8644
...))..))))).))).)))))))).)))).(((((.(((((((((.((	chr9:37296790-37297052(+)$1	1	86	135	123.1864
.....((((((......))))))..........))))))))))......	chr2:236420634-236420957(+)$1	1	81	130	94.8813
((((.(((((.(((.((((((((.((((....................(	chr2:171878440-171878710(-)$1	1	71	120	103.0169
..........................(((......(((((.((((((..	chr2:240190652-240190917(-)$1	1	6	55	93.3559
.(.................................).)))).)))....	chr16:23478648-23478875(-)$1	1	118	167	123.2711
.((((((.((((.((..................................	chr19:50163079-50163408(-)$1	1	118	167	117.4237
))))))))))))......((((...(((.........(.((((...(((	chr7:4810437-4810694(+)$1	1	47	96	102.7627
.))).....))).(((((((.(((.(((.(.(.((((.(.((.(.((((	chr10:80925653-80925911(+)$1	1	52	101	126.9152
)))))))).....))))).))))).......((((((((((......))	chr16:355969-356274(-)$1	1	79	128	96.0677
..))).))))))).))))).)))((((((((((((((((......))))	chr19:5056972-5057260(+)$1	1	59	108	104.6271
.((......))..).))))).))).))..)))).)))............	chr2:74403069-74403375(-)$1	1	116	165	109.3728
((...(((((..............................)))))..((	chr17:3839925-3840159(-)$1	1	101	150	101.9999
((..((.(((((.((((.(((((.((((.....((.((.(...(((.(.	chr14:58885971-58886294(-)$1	1	71	120	126.9152
))).)).)).).))).).).)).))).......................	chr15:66720534-66720822(+)$1	1	76	125	126.9152
)))).))))))))..................................))	chr3:129113503-129113731(-)$1	1	149	198	103.9491
(.((((((.(((.(((.((((........((.(.(.((((((.((((..	chr8:48739488-48739824(-)$1	1	97	146	122.1694
))))))...................................(((...((	chr7:1978318-1978581(-)$1	1	63	112	94.7118
)))).))))))))))..(((...((((((((((((.((.(((...((.(	chr17:34045240-34045520(+)$1	1	89	138	118.9491
((((.(((...................((((((((((((((((((((((	chr19:18620248-18620533(-)$1	1	66	115	126.9152
((((.(((.((..(.((.(((.(..(..........((((((...((((	chr10:65044470-65044743(-)$1	1	76	125	126.9152
((((.....(((.(((.((((.(((........................	chr7:92243871-92244135(-)$1	1	76	125	114.6271
.)))...((((.(.(..(.(.(((((((...((..((((.((((.((..	chr18:34374642-34374985(-)$1	1	141	190	126.9152
.(((.((.(..........(((((((((....)))))))))....((((	chr19:28915053-28915296(-)$1	1	25	74	106.3220
........((((((........................)))))).....	chrX:44758286-44758594(+)$1	1	171	220	117.8474
(((.(((((.(((.....(.(.(((.(((......((.......(((((	chr21:36351060-36351399(-)$1	1	122	171	118.7796
.................................................	chr11:63911168-63911423(-)$1	1	149	198	126.9152
))).))...)))))).))))))))))))).)))...........(.(((	chr20:33153493-33153725(-)$1	1	162	211	99.7118
.)))))).)...))).......)))((((((((....)))))))).(((	chr11:93454763-93454993(+)$1	1	67	116	98.1864
).)))).).))).))....))))........(((.(.(.(.(((.(.(.	chr9:131570549-131570806(+)$1	1	137	186	124.2881
..((((((.(((.(.(((.............((.(((((((((((....	chr7:150809408-150809673(+)$1	1	68	117	95.2203
)))))))(((((((((((((((.((((....))))...)))))))))))	chr17:72912784-72913099(-)$1	1	84	133	93.7796

#PSSM
u : 0.50	U : 0.15	G : 0.13	C : 0.11	A : 0.03	a : 0.01	c : 0.01	g : 0.01	
g : 0.61	G : 0.20	C : 0.08	U : 0.05	A : 0.03	u : 0.01	
u : 0.62	G : 0.13	A : 0.10	C : 0.05	c : 0.03	U : 0.03	a : 0.01	
g : 0.76	G : 0.08	a : 0.03	C : 0.03	c : 0.03	A : 0.03	u : 0.01	
u : 0.76	a : 0.06	c : 0.05	U : 0.05	G : 0.05	C : 0.01	
g : 0.88	G : 0.03	A : 0.03	a : 0.01	U : 0.01	c : 0.01	
u : 0.88	G : 0.05	a : 0.03	g : 0.01	C : 0.01	
g : 0.88	a : 0.03	c : 0.03	C : 0.01	U : 0.01	u : 0.01	
u : 0.88	c : 0.06	a : 0.01	g : 0.01	U : 0.01	
g : 0.91	c : 0.05	C : 0.01	a : 0.01	
u : 0.93	c : 0.03	a : 0.01	G : 0.01	
g : 0.98	u : 0.01	
u : 0.94	c : 0.03	a : 0.01	
g : 0.96	a : 0.03	
u : 0.98	c : 0.01	
g : 0.96	u : 0.01	a : 0.01	
u : 0.89	a : 0.05	c : 0.05	
g : 0.94	a : 0.05	
u : 0.99	
g : 0.99	
u : 0.96	c : 0.03	
g : 0.96	c : 0.01	a : 0.01	
u : 0.96	a : 0.01	c : 0.01	
g : 0.98	c : 0.01	
u : 0.98	a : 0.01	
g : 0.99	
u : 0.94	g : 0.03	c : 0.01	
g : 0.96	a : 0.03	
u : 0.98	c : 0.01	
g : 0.99	
u : 0.98	c : 0.01	
g : 0.96	a : 0.03	
u : 0.94	c : 0.03	a : 0.01	
g : 0.94	a : 0.05	
u : 0.96	c : 0.01	a : 0.01	
g : 0.94	a : 0.05	
u : 0.96	a : 0.03	
g : 0.96	a : 0.01	A : 0.01	
u : 0.91	a : 0.05	g : 0.01	C : 0.01	
g : 0.93	u : 0.03	A : 0.01	G : 0.01	
u : 0.89	c : 0.03	U : 0.01	a : 0.01	g : 0.01	C : 0.01	
g : 0.94	A : 0.03	u : 0.01	
u : 0.86	a : 0.03	c : 0.03	C : 0.03	G : 0.01	A : 0.01	
g : 0.86	A : 0.05	G : 0.03	U : 0.01	C : 0.01	a : 0.01	
u : 0.81	U : 0.06	G : 0.03	C : 0.03	a : 0.01	A : 0.01	c : 0.01	
g : 0.81	U : 0.06	A : 0.03	C : 0.03	G : 0.03	c : 0.01	
u : 0.79	U : 0.08	G : 0.05	c : 0.03	a : 0.01	A : 0.01	
g : 0.81	G : 0.15	c : 0.01	C : 0.01	
u : 0.52	G : 0.13	C : 0.10	c : 0.08	A : 0.06	a : 0.05	g : 0.01	U : 0.01	

#score	6602.322033898287
#seq	59
#width	49
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_CDS_m1_run2.nuc.txt

#NT
CUGGAG	chr11:61734772-61735010(-)$1	238	191	197	11.2539
CUGGAG	chrX:131526069-131526333(-)$1	264	157	163	11.2539
GUGGAG	chr7:103270320-103270561(-)$1	241	101	107	14.4285
GUGGGG	chr14:23239595-23239885(+)$1	290	12	18	10.9365
GUGGAA	chr13:45914105-45914376(-)$1	271	100	106	10.2222
GUGGAA	chr2:21225767-21226004(-)$1	237	139	145	10.2222
CUGGAG	chr11:61734683-61734885(-)$1	202	66	72	11.2539
UUGGAG	chrX:153628703-153628935(+)$1	232	41	47	11.0952
GUGGAG	chr2:21233930-21234161(-)$1	231	5	11	14.4285
GUGCAG	chr2:21227403-21227635(-)$1	232	163	169	10.6984
GUGGUG	chr4:74318182-74318441(+)$1	259	52	58	10.8571
GUGGGG	chr14:94849354-94849576(-)$1	222	19	25	10.9365
GUGGGG	chr19:36640806-36641056(+)$1	250	32	38	10.9365
GUGAAG	chr19:50002678-50002888(+)$1	210	14	20	10.6190
guggcg	chr2:219140158-219140441(-)$1	283	2	8	10.6190
GUGCAG	chr12:9224879-9225095(-)$1	216	70	76	10.6984
GUGGGG	chr17:53471638-53471892(-)$1	254	28	34	10.9365
GUGGAG	chr12:7045732-7045985(+)$1	253	8	14	14.4285
GUGGAG	chr6:47253595-47253866(-)$1	271	234	240	14.4285
GUGGAG	chr12:9262416-9262641(-)$1	225	166	172	14.4285
GUGGAG	chr16:81711854-81712123(+)$1	269	200	206	14.4285
GUGGUG	chr9:130210110-130210367(-)$1	257	189	195	10.8571
GUGAAG	chr7:103290648-103290919(-)$1	271	57	63	10.6190
GUGAAG	chr17:37008794-37009010(-)$1	216	51	57	10.6190
GUGGAA	chr16:21994396-21994654(+)$1	258	55	61	10.2222
GUGUAG	chr16:68156546-68156830(+)$1	284	231	237	10.4603
GUGGAG	chr16:72830097-72830470(-)$1	373	250	256	14.4285
GUGGUG	chr19:57324900-57325163(-)$1	263	14	20	10.8571
GUGGAA	chr2:216271864-216272079(-)$1	215	163	169	10.2222
AUGGAG	chr2:21230187-21230417(-)$1	230	8	14	11.0158
GUGGAG	chr16:11643406-11643663(-)$1	257	184	190	14.4285
GUGCAG	chr16:2012052-2012303(-)$1	251	166	172	10.6984
GUGUAG	chr12:53862460-53862714(+)$1	254	160	166	10.4603
GUGCAG	chr20:33328703-33328966(-)$1	263	184	190	10.6984
GUGGCG	chr5:81574037-81574273(-)$1	236	117	123	10.6190
UUGGAG	chr4:73957474-73957756(-)$1	282	149	155	11.0952
CUGGAG	chr16:68156389-68156717(+)$1	328	55	61	11.2539
GUGGAG	chr2:242194736-242194989(-)$1	253	237	243	14.4285
GUGGAG	chr1:24019004-24019338(+)$1	334	173	179	14.4285
UUGGAG	chr10:7773735-7773973(+)$1	238	141	147	11.0952
GUGGAG	chr2:21227040-21227244(-)$1	204	143	149	14.4285
CUGGAG	chr19:15354121-15354399(-)$1	278	9	15	11.2539
GUGGAA	chr16:52497763-52498063(-)$1	300	176	182	10.2222
GUGGGG	chr17:79826366-79826627(-)$1	261	114	120	10.9365
GUGGAG	chr3:52559139-52559406(-)$1	267	45	51	14.4285
AUGGAG	chr12:6643880-6644127(+)$1	247	11	17	11.0158
gugcag	chr19:15353757-15354031(-)$1	274	47	53	10.6984
CUGGAG	chr14:94849132-94849355(-)$1	223	81	87	11.2539
GUGGAG	chr2:21227077-21227349(-)$1	272	248	254	14.4285
GUGAAG	chr8:101721310-101721551(-)$1	241	1	7	10.6190
GUGGUG	chr19:50001081-50001285(+)$1	204	94	100	10.8571
GUGGAG	chr2:21231488-21231741(-)$1	253	93	99	14.4285
GUGGGG	chr16:2569581-2569852(+)$1	271	33	39	10.9365
GUGGAG	chr1:234742950-234743204(-)$1	254	188	194	14.4285
AUGGAG	chr16:58199407-58199668(-)$1	261	186	192	11.0158
GUGGUG	chr7:6505621-6505875(-)$1	254	110	116	10.8571
GUGGAG	chr1:116946936-116947157(+)$1	221	106	112	14.4285
UUGGAG	chr7:103130130-103130354(-)$1	224	82	88	11.0952
GUGGAG	chr1:116946959-116947201(+)$1	242	83	89	14.4285
AUGGAG	chr3:52028008-52028239(-)$1	231	28	34	11.0158
GUGGAG	chr19:58904422-58904652(+)$1	230	16	22	14.4285
UUGGAG	chr22:32894295-32894616(+)$1	321	22	28	11.0952

#otherMatches

#Struct PSSM
ppppcc	chr11:61553498-61553783(+)$1	285	196	202	11.2539
GGGGGG	chr11:61734772-61735010(-)$1	238	191	197	11.2539
ccc[==	chrX:131526069-131526333(-)$1	264	157	163	11.2539
bb[a[f	chr7:103270320-103270561(-)$1	241	101	107	14.4285
gggccc	chr14:23239595-23239885(+)$1	290	12	18	10.9365
iii444	chr13:45914105-45914376(-)$1	271	100	106	10.2222
cc####	chr2:21225767-21226004(-)$1	237	139	145	10.2222
eeee:c	chr11:61734683-61734885(-)$1	202	66	72	11.2539
IIIIKK	chrX:153628703-153628935(+)$1	232	41	47	11.0952
{DDDDL	chr2:21233930-21234161(-)$1	231	5	11	14.4285
ssssss	chr2:21227403-21227635(-)$1	232	163	169	10.6984
mmccc3	chr4:74318182-74318441(+)$1	259	52	58	10.8571
KDDDDE	chr14:94849354-94849576(-)$1	222	19	25	10.9365
JJJJJJ	chr19:36640806-36641056(+)$1	250	32	38	10.9365
ccc!!c	chr19:50002678-50002888(+)$1	210	14	20	10.6190
IIIIII	chr2:219140158-219140441(-)$1	283	2	8	10.6190
ee[ddd	chr12:9224879-9225095(-)$1	216	70	76	10.6984
DDDD{A	chr17:53471638-53471892(-)$1	254	28	34	10.9365
g[dddd	chr12:7045732-7045985(+)$1	253	8	14	14.4285
??EEEE	chr6:47253595-47253866(-)$1	271	234	240	14.4285
iiiiii	chr12:9262416-9262641(-)$1	225	166	172	14.4285
]ggggg	chr16:81711854-81712123(+)$1	269	200	206	14.4285
eeeeed	chr9:130210110-130210367(-)$1	257	189	195	10.8571
{A{CCC	chr7:103290648-103290919(-)$1	271	57	63	10.6190
nnnnnf	chr17:37008794-37009010(-)$1	216	51	57	10.6190
HHHHKK	chr16:21994396-21994654(+)$1	258	55	61	10.2222
Jbb[dd	chr16:68156546-68156830(+)$1	284	231	237	10.4603
FFFFFF	chr16:72830097-72830470(-)$1	373	250	256	14.4285
]fffff	chr19:57324900-57325163(-)$1	263	14	20	10.8571
ECCC@@	chr2:216271864-216272079(-)$1	215	163	169	10.2222
:FFFFF	chr2:21230187-21230417(-)$1	230	8	14	11.0158
JJJJJJ	chr16:11643406-11643663(-)$1	257	184	190	14.4285
eellle	chr16:2012052-2012303(-)$1	251	166	172	10.6984
oooooo	chr12:53862460-53862714(+)$1	254	160	166	10.4603
gggggg	chr20:33328703-33328966(-)$1	263	184	190	10.6984
FFffff	chr5:81574037-81574273(-)$1	236	117	123	10.6190
gggg]b	chr4:73957474-73957756(-)$1	282	149	155	11.0952
hhhhhh	chr16:68156389-68156717(+)$1	328	55	61	11.2539
FFFFFD	chr2:242194736-242194989(-)$1	253	237	243	14.4285
bb]hhh	chr1:24019004-24019338(+)$1	334	173	179	14.4285
ffffmm	chr10:7773735-7773973(+)$1	238	141	147	11.0952
GGGGGG	chr2:21227040-21227244(-)$1	204	143	149	14.4285
KKBB{B	chr19:15354121-15354399(-)$1	278	9	15	11.2539
ffffff	chr16:52497763-52498063(-)$1	300	176	182	10.2222
iiiiii	chr17:79826366-79826627(-)$1	261	114	120	10.9365
[bb[bb	chr3:52559139-52559406(-)$1	267	45	51	14.4285
ccc!!c	chr12:6643880-6644127(+)$1	247	11	17	11.0158
DDBB{B	chr19:15353757-15354031(-)$1	274	47	53	10.6984
iiiiii	chr14:94849132-94849355(-)$1	223	81	87	11.2539
nnna66	chr2:21227077-21227349(-)$1	272	248	254	14.4285
DDDD{C	chr8:101721310-101721551(-)$1	241	1	7	10.6190
FFFFFF	chr19:50001081-50001285(+)$1	204	94	100	10.8571
GGffff	chr2:21231488-21231741(-)$1	253	93	99	14.4285
bb[ddd	chr16:2569581-2569852(+)$1	271	33	39	10.9365
ccc22d	chr1:234742950-234743204(-)$1	254	188	194	14.4285
ddddnn	chr16:58199407-58199668(-)$1	261	186	192	11.0158
dddd]d	chr7:6505621-6505875(-)$1	254	110	116	10.8571
ggggCC	chr1:116946936-116947157(+)$1	221	106	112	14.4285
ccc[dd	chr7:103130130-103130354(-)$1	224	82	88	11.0952
ggggbb	chr1:116946959-116947201(+)$1	242	83	89	14.4285
!!gggg	chr3:52028008-52028239(-)$1	231	28	34	11.0158
======	chr19:58904422-58904652(+)$1	230	16	22	14.4285
ffff::	chr22:32894295-32894616(+)$1	321	22	28	11.0952

#DB
....))	chr11:61553498-61553783(+)$1	1	196	202	11.2539
))))))	chr11:61734772-61735010(-)$1	1	191	197	11.2539
(((.((	chrX:131526069-131526333(-)$1	1	157	163	11.2539
((.(.(	chr7:103270320-103270561(-)$1	1	101	107	14.4285
((((((	chr14:23239595-23239885(+)$1	1	12	18	10.9365
)))...	chr13:45914105-45914376(-)$1	1	100	106	10.2222
((....	chr2:21225767-21226004(-)$1	1	139	145	10.2222
)))).(	chr11:61734683-61734885(-)$1	1	66	72	11.2539
((((..	chrX:153628703-153628935(+)$1	1	41	47	11.0952
.((((.	chr2:21233930-21234161(-)$1	1	5	11	14.4285
......	chr2:21227403-21227635(-)$1	1	163	169	10.6984
..))).	chr4:74318182-74318441(+)$1	1	52	58	10.8571
.(((((	chr14:94849354-94849576(-)$1	1	19	25	10.9365
((((((	chr19:36640806-36641056(+)$1	1	32	38	10.9365
(((..(	chr19:50002678-50002888(+)$1	1	14	20	10.6190
((((((	chr2:219140158-219140441(-)$1	1	2	8	10.6190
((.(((	chr12:9224879-9225095(-)$1	1	70	76	10.6984
((((.(	chr17:53471638-53471892(-)$1	1	28	34	10.9365
(.((((	chr12:7045732-7045985(+)$1	1	8	14	14.4285
..))))	chr6:47253595-47253866(-)$1	1	234	240	14.4285
((((((	chr12:9262416-9262641(-)$1	1	166	172	14.4285
.)))))	chr16:81711854-81712123(+)$1	1	200	206	14.4285
)))))(	chr9:130210110-130210367(-)$1	1	189	195	10.8571
.(.(((	chr7:103290648-103290919(-)$1	1	57	63	10.6190
.....)	chr17:37008794-37009010(-)$1	1	51	57	10.6190
((((..	chr16:21994396-21994654(+)$1	1	55	61	10.2222
)((.((	chr16:68156546-68156830(+)$1	1	231	237	10.4603
))))))	chr16:72830097-72830470(-)$1	1	250	256	14.4285
.)))))	chr19:57324900-57325163(-)$1	1	14	20	10.8571
))))..	chr2:216271864-216272079(-)$1	1	163	169	10.2222
.(((((	chr2:21230187-21230417(-)$1	1	8	14	11.0158
))))))	chr16:11643406-11643663(-)$1	1	184	190	14.4285
((...)	chr16:2012052-2012303(-)$1	1	166	172	10.6984
......	chr12:53862460-53862714(+)$1	1	160	166	10.4603
))))))	chr20:33328703-33328966(-)$1	1	184	190	10.6984
((((((	chr5:81574037-81574273(-)$1	1	117	123	10.6190
)))).)	chr4:73957474-73957756(-)$1	1	149	155	11.0952
))))))	chr16:68156389-68156717(+)$1	1	55	61	11.2539
))))))	chr2:242194736-242194989(-)$1	1	237	243	14.4285
)).)))	chr1:24019004-24019338(+)$1	1	173	179	14.4285
((((..	chr10:7773735-7773973(+)$1	1	141	147	11.0952
))))))	chr2:21227040-21227244(-)$1	1	143	149	14.4285
..((.(	chr19:15354121-15354399(-)$1	1	9	15	11.2539
))))))	chr16:52497763-52498063(-)$1	1	176	182	10.2222
))))))	chr17:79826366-79826627(-)$1	1	114	120	10.9365
.((.((	chr3:52559139-52559406(-)$1	1	45	51	14.4285
(((..(	chr12:6643880-6644127(+)$1	1	11	17	11.0158
((((.(	chr19:15353757-15354031(-)$1	1	47	53	10.6984
((((((	chr14:94849132-94849355(-)$1	1	81	87	11.2539
...)..	chr2:21227077-21227349(-)$1	1	248	254	14.4285
((((.(	chr8:101721310-101721551(-)$1	1	1	7	10.6190
((((((	chr19:50001081-50001285(+)$1	1	94	100	10.8571
((((((	chr2:21231488-21231741(-)$1	1	93	99	14.4285
((.(((	chr16:2569581-2569852(+)$1	1	33	39	10.9365
)))..)	chr1:234742950-234743204(-)$1	1	188	194	14.4285
((((..	chr16:58199407-58199668(-)$1	1	186	192	11.0158
)))).)	chr7:6505621-6505875(-)$1	1	110	116	10.8571
))))))	chr1:116946936-116947157(+)$1	1	106	112	14.4285
(((.((	chr7:103130130-103130354(-)$1	1	82	88	11.0952
))))((	chr1:116946959-116947201(+)$1	1	83	89	14.4285
..((((	chr3:52028008-52028239(-)$1	1	28	34	11.0158
((((((	chr19:58904422-58904652(+)$1	1	16	22	14.4285
))))..	chr22:32894295-32894616(+)$1	1	22	28	11.0952

#PSSM
G : 0.71	C : 0.11	U : 0.07	A : 0.06	g : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	
G : 0.80	C : 0.06	A : 0.06	U : 0.03	g : 0.01	c : 0.01	
A : 0.77	G : 0.09	U : 0.07	c : 0.01	C : 0.01	a : 0.01	
G : 0.88	A : 0.07	g : 0.03	

#score	747.1746031746023
#seq	63
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_UTR_m2_run2.nuc.txt

#NT
GGGGCGGGG	chr14:100772581-100772895(-)$1	314	64	73	24.0000
GGGGCGGGG	chr3:48754487-48754697(-)$1	210	22	31	24.0000
GGGGCGGGG	chr9:88555996-88556294(+)$1	298	40	49	24.0000
GGGGCGGGU	chr19:5719890-5720254(-)$1	364	194	203	19.7000
GGGGCGGGG	chr16:31519487-31519800(-)$1	313	77	86	24.0000
UGGGCGGGG	chr2:61244752-61245035(+)$1	283	28	37	19.8000
GGCGCGGGG	chr5:172755092-172755396(-)$1	304	262	271	19.8000
GGGGAGGGG	chr2:208576456-208576737(+)$1	281	88	97	19.7000
GGGGCUGGG	chr21:18885277-18885536(+)$1	259	31	40	19.4000
GGAGCGGGG	chr16:31044896-31045167(+)$1	271	0	9	19.7000
GGGGCGGGG	chr17:40075030-40075318(-)$1	288	54	63	24.0000
GAGGCGGGG	chr14:24036853-24037065(-)$1	212	17	26	19.8000
GUGGCGGGG	chr5:114880177-114880557(-)$1	380	154	163	19.6000
GGGGCGGGG	chr6:291970-292311(+)$1	341	276	285	24.0000
ggcgcgggg	chr19:32896576-32896933(+)$1	357	28	37	19.8000
GGGGCGGUG	chr2:153191801-153192082(+)$1	281	16	25	19.4000
GGGGCGGGG	chr5:79703735-79704158(+)$1	423	112	121	24.0000
CGGGCGGGG	chr6:43445209-43445465(+)$1	256	180	189	20.0000
GGGGCUGGG	chr12:99038309-99038663(-)$1	354	45	54	19.4000
GGGGCGGGG	chr14:36789606-36789935(-)$1	329	81	90	24.0000
GGCGCGGGG	chr1:202317839-202318111(+)$1	272	257	266	19.8000
GGGGCGGGG	chr12:118810490-118810790(-)$1	300	30	39	24.0000
GGGGCGGGC	chr19:46367481-46367779(+)$1	298	43	52	19.7000
GGGGCGGGG	chr10:1094579-1094858(-)$1	279	119	128	24.0000
GCGGCGGGG	chr16:84733570-84733822(+)$1	252	65	74	19.6000
GGGGCGGGU	chr15:44955693-44955956(-)$1	263	176	185	19.7000
ggggcgggg	chr4:2794658-2794974(+)$1	316	49	58	24.0000
GGGGAGGGG	chr3:187871552-187871823(+)$1	271	87	96	19.7000
GGGGCGGGA	chr13:40229723-40230075(+)$1	352	120	129	19.6000
GGGGCGGGG	chr11:71791400-71791652(-)$1	252	41	50	24.0000
GGGGCGGCG	chr2:85839002-85839262(-)$1	260	75	84	19.4000
UGGGCGGGG	chr1:242011426-242011753(+)$1	327	40	49	19.8000
ggggcgggg	chr16:87417144-87417465(-)$1	321	56	65	24.0000
GGGGCGGGG	chr18:56338596-56338858(+)$1	262	114	123	24.0000
CGGGCGGGG	chr9:138986934-138987226(-)$1	292	236	245	20.0000
GGGGCGGGC	chr3:48470617-48470889(-)$1	272	74	83	19.7000
ggggcggAG	chr17:61851497-61851771(+)$1	274	125	134	19.4000
GGGGCGGGG	chr19:35491129-35491408(+)$1	279	39	48	24.0000
ggggcgggg	chr20:32077837-32078115(+)$1	278	17	26	24.0000
ggggcgggg	chr2:62423151-62423423(+)$1	272	15	24	24.0000
GGGGCGGGG	chr2:109403132-109403479(+)$1	347	48	57	24.0000
GAGGCGGGG	chr17:7476465-7476696(+)$1	231	146	155	19.8000
cgggcgggg	chr17:76778176-76778471(-)$1	295	41	50	20.0000
ggagcgggg	chr13:113344622-113344886(+)$1	264	8	17	19.7000
GAggcgggg	chr18:77867063-77867314(+)$1	251	154	163	19.8000
ggggcgggg	chr12:30907719-30907982(-)$1	263	49	58	24.0000
GGGGAGGGG	chr7:94285295-94285558(-)$1	263	105	114	19.7000
ggggcgggg	chr17:58469336-58469576(-)$1	240	62	71	24.0000
cgggcgggg	chr6:168227505-168227812(+)$1	307	38	47	20.0000

#otherMatches

#Struct PSSM
JJJJJa[dd	chr10:73975809-73976084(+)$1	275	49	58	19.5000
]gggggggb	chr14:100772581-100772895(-)$1	314	64	73	24.0000
ffffffeee	chr3:48754487-48754697(-)$1	210	22	31	24.0000
fffff4444	chr9:88555996-88556294(+)$1	298	40	49	24.0000
CC}CCCEEE	chr19:5719890-5720254(-)$1	364	194	203	19.7000
ffdddd]gg	chr16:31519487-31519800(-)$1	313	77	86	24.0000
eccc[gggg	chr2:61244752-61245035(+)$1	283	28	37	19.8000
IIIII:ggg	chr5:172755092-172755396(-)$1	304	262	271	19.8000
pppbb]bb]	chr2:208576456-208576737(+)$1	281	88	97	19.7000
KGGGGGGG:	chr21:18885277-18885536(+)$1	259	31	40	19.4000
:::CCC:dd	chr16:31044896-31045167(+)$1	271	0	9	19.7000
JJJJJJJJJ	chr17:40075030-40075318(-)$1	288	54	63	24.0000
G{EEEEE{B	chr14:24036853-24037065(-)$1	212	17	26	19.8000
ee[bb"""b	chr5:114880177-114880557(-)$1	380	154	163	19.6000
mmma]a]a]	chr6:291970-292311(+)$1	341	276	285	24.0000
b]a]ggggg	chr19:32896576-32896933(+)$1	357	28	37	19.8000
:FFFFFF{C	chr2:153191801-153192082(+)$1	281	16	25	19.4000
mddddeeee	chr5:79703735-79704158(+)$1	423	112	121	24.0000
7ggggggg3	chr6:43445209-43445465(+)$1	256	180	189	20.0000
LLCCCdddd	chr12:99038309-99038663(-)$1	354	45	54	19.4000
JJJJJJJJJ	chr14:36789606-36789935(-)$1	329	81	90	24.0000
ttffffffB	chr1:202317839-202318111(+)$1	272	257	266	19.8000
LLLCCC{CC	chr12:118810490-118810790(-)$1	300	30	39	24.0000
HHHHfffff	chr19:46367481-46367779(+)$1	298	43	52	19.7000
####ddddp	chr10:1094579-1094858(-)$1	279	119	128	24.0000
bb[ccc!!a	chr16:84733570-84733822(+)$1	252	65	74	19.6000
[bbssssss	chr15:44955693-44955956(-)$1	263	176	185	19.7000
ppffffff]	chr4:2794658-2794974(+)$1	316	49	58	24.0000
ccc[=====	chr3:187871552-187871823(+)$1	271	87	96	19.7000
ggg]bbccc	chr13:40229723-40230075(+)$1	352	120	129	19.6000
[a####ddd	chr11:71791400-71791652(-)$1	252	41	50	24.0000
d]agggggg	chr2:85839002-85839262(-)$1	260	75	84	19.4000
FJJJJJJJJ	chr1:242011426-242011753(+)$1	327	40	49	19.8000
c[ffffff[	chr16:87417144-87417465(-)$1	321	56	65	24.0000
IIIIIIIII	chr18:56338596-56338858(+)$1	262	114	123	24.0000
!bbeeeee[	chr9:138986934-138987226(-)$1	292	236	245	20.0000
hhhhhhhh[	chr3:48470617-48470889(-)$1	272	74	83	19.7000
GGGYYDDDD	chr17:61851497-61851771(+)$1	274	125	134	19.4000
JJJJJJJJJ	chr19:35491129-35491408(+)$1	279	39	48	24.0000
qqqqqqqqc	chr20:32077837-32078115(+)$1	278	17	26	24.0000
eeeeeqqqq	chr2:62423151-62423423(+)$1	272	15	24	24.0000
=========	chr2:109403132-109403479(+)$1	347	48	57	24.0000
nnneeeeef	chr17:7476465-7476696(+)$1	231	146	155	19.8000
GGG{A{DDD	chr17:76778176-76778471(-)$1	295	41	50	20.0000
EEEEAA{EE	chr13:113344622-113344886(+)$1	264	8	17	19.7000
d:CCCIIII	chr18:77867063-77867314(+)$1	251	154	163	19.8000
f[aoooooo	chr12:30907719-30907982(-)$1	263	49	58	24.0000
"bb!!ccc!	chr7:94285295-94285558(-)$1	263	105	114	19.7000
+++ccc[cc	chr17:58469336-58469576(-)$1	240	62	71	24.0000
BB{GGGGGG	chr6:168227505-168227812(+)$1	307	38	47	20.0000

#DB
((((((.((	chr10:73975809-73976084(+)$1	1	49	58	19.5000
.))))))))	chr14:100772581-100772895(-)$1	1	64	73	24.0000
(((((((((	chr3:48754487-48754697(-)$1	1	22	31	24.0000
)))))....	chr9:88555996-88556294(+)$1	1	40	49	24.0000
)).))))))	chr19:5719890-5720254(-)$1	1	194	203	19.7000
)))))).))	chr16:31519487-31519800(-)$1	1	77	86	24.0000
((((.((((	chr2:61244752-61245035(+)$1	1	28	37	19.8000
))))).(((	chr5:172755092-172755396(-)$1	1	262	271	19.8000
...)).)).	chr2:208576456-208576737(+)$1	1	88	97	19.7000
.(((((((.	chr21:18885277-18885536(+)$1	1	31	40	19.4000
...(((.((	chr16:31044896-31045167(+)$1	1	0	9	19.7000
(((((((((	chr17:40075030-40075318(-)$1	1	54	63	24.0000
(.(((((.(	chr14:24036853-24037065(-)$1	1	17	26	19.8000
((.((...(	chr5:114880177-114880557(-)$1	1	154	163	19.6000
...).).).	chr6:291970-292311(+)$1	1	276	285	24.0000
).).)))))	chr19:32896576-32896933(+)$1	1	28	37	19.8000
.((((((.(	chr2:153191801-153192082(+)$1	1	16	25	19.4000
.))))((((	chr5:79703735-79704158(+)$1	1	112	121	24.0000
.))))))).	chr6:43445209-43445465(+)$1	1	180	189	20.0000
..(((((((	chr12:99038309-99038663(-)$1	1	45	54	19.4000
(((((((((	chr14:36789606-36789935(-)$1	1	81	90	24.0000
..)))))))	chr1:202317839-202318111(+)$1	1	257	266	19.8000
...(((.((	chr12:118810490-118810790(-)$1	1	30	39	24.0000
(((((((((	chr19:46367481-46367779(+)$1	1	43	52	19.7000
....((((.	chr10:1094579-1094858(-)$1	1	119	128	24.0000
((.(((..(	chr16:84733570-84733822(+)$1	1	65	74	19.6000
.((......	chr15:44955693-44955956(-)$1	1	176	185	19.7000
..)))))).	chr4:2794658-2794974(+)$1	1	49	58	24.0000
(((.(((((	chr3:187871552-187871823(+)$1	1	87	96	19.7000
))).)))))	chr13:40229723-40230075(+)$1	1	120	129	19.6000
.(....(((	chr11:71791400-71791652(-)$1	1	41	50	24.0000
).)))))))	chr2:85839002-85839262(-)$1	1	75	84	19.4000
(((((((((	chr1:242011426-242011753(+)$1	1	40	49	19.8000
(.((((((.	chr16:87417144-87417465(-)$1	1	56	65	24.0000
)))))))))	chr18:56338596-56338858(+)$1	1	114	123	24.0000
.(((((((.	chr9:138986934-138987226(-)$1	1	236	245	20.0000
((((((((.	chr3:48470617-48470889(-)$1	1	74	83	19.7000
)))..))))	chr17:61851497-61851771(+)$1	1	125	134	19.4000
(((((((((	chr19:35491129-35491408(+)$1	1	39	48	24.0000
........)	chr20:32077837-32078115(+)$1	1	17	26	24.0000
(((((....	chr2:62423151-62423423(+)$1	1	15	24	24.0000
)))))))))	chr2:109403132-109403479(+)$1	1	48	57	24.0000
...))))))	chr17:7476465-7476696(+)$1	1	146	155	19.8000
(((.(.(((	chr17:76778176-76778471(-)$1	1	41	50	20.0000
((((((.((	chr13:113344622-113344886(+)$1	1	8	17	19.7000
).)))))))	chr18:77867063-77867314(+)$1	1	154	163	19.8000
(.(......	chr12:30907719-30907982(-)$1	1	49	58	24.0000
.((..(((.	chr7:94285295-94285558(-)$1	1	105	114	19.7000
...(((.((	chr17:58469336-58469576(-)$1	1	62	71	24.0000
((.((((((	chr6:168227505-168227812(+)$1	1	38	47	20.0000

#PSSM
G : 0.70	g : 0.18	U : 0.04	C : 0.04	c : 0.04	
G : 0.68	g : 0.21	A : 0.06	U : 0.02	C : 0.02	
G : 0.70	g : 0.19	C : 0.04	A : 0.02	c : 0.02	a : 0.02	
G : 0.76	g : 0.23	
C : 0.68	c : 0.23	A : 0.06	U : 0.02	
G : 0.72	g : 0.23	U : 0.04	
G : 0.76	g : 0.23	
G : 0.72	g : 0.21	U : 0.02	C : 0.02	A : 0.02	
G : 0.68	g : 0.21	U : 0.04	C : 0.04	A : 0.02	

#score	1071.0000000000007
#seq	50
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_CDS_m1_run2.nuc.txt

#NT
UGCAG	chr11:126134928-126135168(-)$1	240	11	16	15.0000
UGCAG	chr5:154173500-154173765(+)$1	265	100	105	15.0000
UGCAG	chr3:195974212-195974494(-)$1	282	6	11	15.0000
UGCAG	chr1:12515942-12516226(+)$1	284	191	196	15.0000
UGCAG	chr11:6501161-6501415(-)$1	254	1	6	15.0000
UGCAG	chr2:37443428-37443660(-)$1	232	130	135	15.0000
UGCAG	chr7:100469006-100469312(+)$1	306	42	47	15.0000
UGCAG	chr21:34134517-34134732(-)$1	215	117	122	15.0000
UGCAG	chr15:75129439-75129680(-)$1	241	197	202	15.0000
UGCAG	chr7:101821683-101821936(+)$1	253	153	158	15.0000
UGCAG	chr17:12898080-12898352(-)$1	272	21	26	15.0000
UGCAG	chr4:1348396-1348661(+)$1	265	138	143	15.0000
UGCAG	chr10:81917626-81917885(-)$1	259	69	74	15.0000
UGCAG	chr2:242173232-242173484(-)$1	252	6	11	15.0000
UGCAG	chr22:22153261-22153502(-)$1	241	111	116	15.0000
UGCAG	chrX:153608999-153609231(+)$1	232	108	113	15.0000
UGCAG	chr1:32660403-32660683(+)$1	280	130	135	15.0000
UGCAG	chr19:15510013-15510249(-)$1	236	73	78	15.0000
UGCAG	chr17:79871520-79871782(-)$1	262	146	151	15.0000
UGCAG	chr20:49225356-49225612(-)$1	256	242	247	15.0000
UGCAG	chr9:131755717-131755967(+)$1	250	81	86	15.0000
UGCAG	chr3:10122953-10123197(+)$1	244	167	172	15.0000
UGCAG	chr11:72018118-72018403(-)$1	285	187	192	15.0000
UGCAG	chr10:79769602-79769870(-)$1	268	62	67	15.0000
UGCAG	chrX:153208347-153208610(-)$1	263	119	124	15.0000
UGCAG	chr14:74193534-74193806(-)$1	272	197	202	15.0000
UGCAG	chr1:179019296-179019566(+)$1	270	112	117	15.0000
UGCAG	chr7:98522633-98522880(+)$1	247	22	27	15.0000
UGCAG	chr17:4575211-4575471(-)$1	260	169	174	15.0000
UGCAG	chr19:966653-966956(+)$1	303	84	89	15.0000
UGCAG	chr21:45742824-45743053(+)$1	229	15	20	15.0000
UGCAG	chr16:67916020-67916245(+)$1	225	4	9	15.0000
UGCAG	chr1:65334986-65335297(-)$1	311	273	278	15.0000
UGCAG	chr11:12883675-12884005(+)$1	330	246	251	15.0000
UGCAG	chr17:20908141-20908426(-)$1	285	15	20	15.0000
UGCAG	chr18:55222044-55222303(-)$1	259	0	5	15.0000
UGCAG	chr19:45160877-45161176(+)$1	299	112	117	15.0000
UGCAG	chr6:31856293-31856510(-)$1	217	45	50	15.0000
UGCAG	chr12:6778218-6778478(-)$1	260	191	196	15.0000
UGCAG	chr7:150814623-150814852(+)$1	229	116	121	15.0000
UGCAG	chr16:88943575-88943831(-)$1	256	184	189	15.0000
UGCAG	chr9:111674632-111674875(-)$1	243	96	101	15.0000
UGCAG	chr17:79864270-79864523(-)$1	253	96	101	15.0000
UGCAG	chr11:65375582-65375856(-)$1	274	157	162	15.0000
UGCAG	chr12:56713013-56713270(-)$1	257	147	152	15.0000
ugcag	chr8:27369294-27369611(+)$1	317	258	263	15.0000
UGCAG	chr9:100777550-100777776(+)$1	226	177	182	15.0000
UGCAG	chr2:145187444-145187718(-)$1	274	120	125	15.0000
UGCAG	chr17:73832054-73832293(-)$1	239	8	13	15.0000
UGCAG	chr1:12023474-12023721(+)$1	247	109	114	15.0000

#otherMatches

#Struct PSSM
mbb::	chr9:130698801-130699065(-)$1	264	17	22	15.0000
ggggg	chr11:126134928-126135168(-)$1	240	11	16	15.0000
f[bb!	chr5:154173500-154173765(+)$1	265	100	105	15.0000
dddqq	chr3:195974212-195974494(-)$1	282	6	11	15.0000
ddd[b	chr1:12515942-12516226(+)$1	284	191	196	15.0000
eeee[	chr11:6501161-6501415(-)$1	254	1	6	15.0000
oooob	chr2:37443428-37443660(-)$1	232	130	135	15.0000
:::::	chr7:100469006-100469312(+)$1	306	42	47	15.0000
fffff	chr21:34134517-34134732(-)$1	215	117	122	15.0000
ddd::	chr15:75129439-75129680(-)$1	241	197	202	15.0000
[bb[a	chr7:101821683-101821936(+)$1	253	153	158	15.0000
ooooo	chr17:12898080-12898352(-)$1	272	21	26	15.0000
dd"""	chr4:1348396-1348661(+)$1	265	138	143	15.0000
JJJJJ	chr10:81917626-81917885(-)$1	259	69	74	15.0000
d[ddd	chr2:242173232-242173484(-)$1	252	6	11	15.0000
=====	chr22:22153261-22153502(-)$1	241	111	116	15.0000
g[ddd	chrX:153608999-153609231(+)$1	232	108	113	15.0000
mmmmc	chr1:32660403-32660683(+)$1	280	130	135	15.0000
EE::E	chr19:15510013-15510249(-)$1	236	73	78	15.0000
:dddd	chr17:79871520-79871782(-)$1	262	146	151	15.0000
D}CCC	chr20:49225356-49225612(-)$1	256	242	247	15.0000
fff[e	chr9:131755717-131755967(+)$1	250	81	86	15.0000
d[ccc	chr3:10122953-10123197(+)$1	244	167	172	15.0000
Ddddd	chr11:72018118-72018403(-)$1	285	187	192	15.0000
2eeee	chr10:79769602-79769870(-)$1	268	62	67	15.0000
JJJJJ	chrX:153208347-153208610(-)$1	263	119	124	15.0000
ee22b	chr14:74193534-74193806(-)$1	272	197	202	15.0000
2ffff	chr1:179019296-179019566(+)$1	270	112	117	15.0000
CCCLL	chr7:98522633-98522880(+)$1	247	22	27	15.0000
!ffff	chr17:4575211-4575471(-)$1	260	169	174	15.0000
::ccc	chr19:966653-966956(+)$1	303	84	89	15.0000
:bb[b	chr21:45742824-45743053(+)$1	229	15	20	15.0000
:::gg	chr16:67916020-67916245(+)$1	225	4	9	15.0000
Dffff	chr1:65334986-65335297(-)$1	311	273	278	15.0000
33bb]	chr11:12883675-12884005(+)$1	330	246	251	15.0000
G:ggg	chr17:20908141-20908426(-)$1	285	15	20	15.0000
EEEEE	chr18:55222044-55222303(-)$1	259	0	5	15.0000
ZEEEE	chr19:45160877-45161176(+)$1	299	112	117	15.0000
fffpp	chr6:31856293-31856510(-)$1	217	45	50	15.0000
dddd[	chr12:6778218-6778478(-)$1	260	191	196	15.0000
ggggg	chr7:150814623-150814852(+)$1	229	116	121	15.0000
eeeee	chr16:88943575-88943831(-)$1	256	184	189	15.0000
!hhhh	chr9:111674632-111674875(-)$1	243	96	101	15.0000
]dddd	chr17:79864270-79864523(-)$1	253	96	101	15.0000
iiii5	chr11:65375582-65375856(-)$1	274	157	162	15.0000
iiiii	chr12:56713013-56713270(-)$1	257	147	152	15.0000
"ffff	chr8:27369294-27369611(+)$1	317	258	263	15.0000
"dddd	chr9:100777550-100777776(+)$1	226	177	182	15.0000
::::c	chr2:145187444-145187718(-)$1	274	120	125	15.0000
DDDdd	chr17:73832054-73832293(-)$1	239	8	13	15.0000
:dddd	chr1:12023474-12023721(+)$1	247	109	114	15.0000

#DB
.))..	chr9:130698801-130699065(-)$1	1	17	22	15.0000
(((((	chr11:126134928-126135168(-)$1	1	11	16	15.0000
(.((.	chr5:154173500-154173765(+)$1	1	100	105	15.0000
(((..	chr3:195974212-195974494(-)$1	1	6	11	15.0000
(((.(	chr1:12515942-12516226(+)$1	1	191	196	15.0000
((((.	chr11:6501161-6501415(-)$1	1	1	6	15.0000
....)	chr2:37443428-37443660(-)$1	1	130	135	15.0000
.....	chr7:100469006-100469312(+)$1	1	42	47	15.0000
(((((	chr21:34134517-34134732(-)$1	1	117	122	15.0000
)))..	chr15:75129439-75129680(-)$1	1	197	202	15.0000
.((.(	chr7:101821683-101821936(+)$1	1	153	158	15.0000
.....	chr17:12898080-12898352(-)$1	1	21	26	15.0000
((...	chr4:1348396-1348661(+)$1	1	138	143	15.0000
(((((	chr10:81917626-81917885(-)$1	1	69	74	15.0000
(.(((	chr2:242173232-242173484(-)$1	1	6	11	15.0000
)))))	chr22:22153261-22153502(-)$1	1	111	116	15.0000
(.(((	chrX:153608999-153609231(+)$1	1	108	113	15.0000
....)	chr1:32660403-32660683(+)$1	1	130	135	15.0000
((..(	chr19:15510013-15510249(-)$1	1	73	78	15.0000
.((((	chr17:79871520-79871782(-)$1	1	146	151	15.0000
).)))	chr20:49225356-49225612(-)$1	1	242	247	15.0000
(((.(	chr9:131755717-131755967(+)$1	1	81	86	15.0000
(.(((	chr3:10122953-10123197(+)$1	1	167	172	15.0000
(((((	chr11:72018118-72018403(-)$1	1	187	192	15.0000
.))))	chr10:79769602-79769870(-)$1	1	62	67	15.0000
)))))	chrX:153208347-153208610(-)$1	1	119	124	15.0000
))..)	chr14:74193534-74193806(-)$1	1	197	202	15.0000
.))))	chr1:179019296-179019566(+)$1	1	112	117	15.0000
(((..	chr7:98522633-98522880(+)$1	1	22	27	15.0000
.((((	chr17:4575211-4575471(-)$1	1	169	174	15.0000
..(((	chr19:966653-966956(+)$1	1	84	89	15.0000
.((.(	chr21:45742824-45743053(+)$1	1	15	20	15.0000
...((	chr16:67916020-67916245(+)$1	1	4	9	15.0000
)((((	chr1:65334986-65335297(-)$1	1	273	278	15.0000
..)).	chr11:12883675-12884005(+)$1	1	246	251	15.0000
(.(((	chr17:20908141-20908426(-)$1	1	15	20	15.0000
(((((	chr18:55222044-55222303(-)$1	1	0	5	15.0000
.))))	chr19:45160877-45161176(+)$1	1	112	117	15.0000
(((..	chr6:31856293-31856510(-)$1	1	45	50	15.0000
((((.	chr12:6778218-6778478(-)$1	1	191	196	15.0000
(((((	chr7:150814623-150814852(+)$1	1	116	121	15.0000
(((((	chr16:88943575-88943831(-)$1	1	184	189	15.0000
.((((	chr9:111674632-111674875(-)$1	1	96	101	15.0000
.))))	chr17:79864270-79864523(-)$1	1	96	101	15.0000
)))).	chr11:65375582-65375856(-)$1	1	157	162	15.0000
)))))	chr12:56713013-56713270(-)$1	1	147	152	15.0000
.((((	chr8:27369294-27369611(+)$1	1	258	263	15.0000
.((((	chr9:100777550-100777776(+)$1	1	177	182	15.0000
....(	chr2:145187444-145187718(-)$1	1	120	125	15.0000
(((((	chr17:73832054-73832293(-)$1	1	8	13	15.0000
.((((	chr1:12023474-12023721(+)$1	1	109	114	15.0000

#PSSM
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
C : 0.98	c : 0.01	
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	

#score	765.0000000000001
#seq	51
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_transcript_m1_run1.nuc.txt

#NT
GUGAGUGUGUGAGUG	chr1:109642801-109643009(+)$1	208	108	123	29.7727
gugugugugugugug	chr7:6741988-6742237(-)$1	249	61	76	38.0681
CUGUGUGUGUGUGUG	chr3:51533787-51534066(-)$1	279	69	84	34.0909
gugugugugugugug	chr16:23478554-23478842(-)$1	288	88	103	38.0681
gugccugugugugug	chr17:79048381-79048661(+)$1	280	98	113	29.8863
guguguaugugugug	chr10:103590455-103590748(-)$1	293	98	113	34.4318
gugugcaugugugug	chr1:1276250-1276560(-)$1	310	116	131	30.4545
gugugugcguguguc	chr7:1110053-1110363(-)$1	310	168	183	30.3409
gugugugugugugua	chr2:122236191-122236504(-)$1	313	284	299	34.3181
gugugugugugugug	chr11:93454734-93454987(+)$1	253	97	112	38.0681
gugugugugugugug	chr16:621133-621425(+)$1	292	49	64	38.0681
gugugugugucugug	chr19:1642152-1642409(-)$1	257	79	94	33.6363
gugugugugugugug	chr19:2336811-2337063(+)$1	252	22	37	38.0681
AUCUGUGUGCGUGUG	chr16:12354578-12354851(+)$1	273	102	117	25.6818
gugcaugugugugug	chr16:88960960-88961200(-)$1	240	162	177	29.6590
gugcgugugugugua	chr22:19887055-19887337(-)$1	282	18	33	30.3409
gugugugugugugug	chr16:87771832-87772081(-)$1	249	97	112	38.0681
gugugagugcgcgug	chr4:880977-881237(-)$1	260	142	157	26.0227
Cugugugugugugug	chr17:78607820-78608096(+)$1	276	97	112	34.0909
gaguguccgugugug	chr11:497098-497380(-)$1	282	22	37	25.5681
gugugcaugugugug	chr7:1479213-1479500(-)$1	287	103	118	30.4545
gugugugcgcgcgug	chr1:1158377-1158645(-)$1	268	65	80	26.0227
GUGUCUGUCUGUGUU	chr11:9450212-9450473(+)$1	261	147	162	25.2272
GUGUGUGUGUGUCUG	chr21:46554281-46554513(+)$1	232	148	163	33.5227
gugugugugugugug	chr16:89981290-89981535(+)$1	245	92	107	38.0681
gugugugugugugug	chr19:2336609-2336963(+)$1	354	182	197	38.0681
gugugccugugugug	chr16:89370538-89370857(-)$1	319	6	21	30.4545
gugugugugugugug	chr10:103590398-103590655(-)$1	257	188	203	38.0681
cuguguguaugugug	chr16:89370966-89371200(-)$1	234	105	120	29.4318
GUGUGAGUGUGUGUG	chr1:27561121-27561385(+)$1	264	88	103	33.9772
guguguguguuugug	chr1:228331591-228331828(+)$1	237	183	198	33.5227
gugagugugugagug	chr3:13415325-13415589(-)$1	264	17	32	29.7727
gugucugugcguguc	chr1:987550-987798(+)$1	248	143	158	26.5909
gugugugugucucuc	chr11:47379918-47380227(-)$1	309	53	68	25.4545
gugugugugugugug	chr22:49974065-49974397(-)$1	332	143	158	38.0681
gugugugugugugug	chr1:42643255-42643525(-)$1	270	82	97	38.0681
augugugugugugug	chr11:47377097-47377354(-)$1	257	80	95	34.0909
auguguaugcguguc	chr1:1158193-1158531(-)$1	338	131	146	23.1818
gugugucugugugug	chr1:988309-988573(+)$1	264	57	72	34.4318
GUGAGGCUGUGUGUG	chr3:128216108-128216366(+)$1	258	112	127	26.2499
gugugugugugugug	chr3:129113262-129113604(-)$1	342	33	48	38.0681
gugugugugcgugua	chr19:3687315-3687631(-)$1	316	17	32	30.6818
gugugugcgugugug	chr22:49918089-49918389(-)$1	300	149	164	33.9772

#otherMatches

#Struct PSSM
g[gggggggyyyyyy	chr22:19896884-19897211(-)$1	327	174	189	38.0681
mmmmdddd]bb22==	chr1:109642801-109643009(+)$1	208	108	123	29.7727
d]ffffff]a]a555	chr7:6741988-6742237(-)$1	249	61	76	38.0681
DD{CCCBB{BB{BB{	chr3:51533787-51534066(-)$1	279	69	84	34.0909
nnnna]dddd]ccc:	chr16:23478554-23478842(-)$1	288	88	103	38.0681
occc]a]========	chr17:79048381-79048661(+)$1	280	98	113	29.8863
===========mmmm	chr10:103590455-103590748(-)$1	293	98	113	34.4318
aqqqqqqqqa]ffff	chr1:1276250-1276560(-)$1	310	116	131	30.4545
===!!gggggggqqq	chr7:1110053-1110363(-)$1	310	168	183	30.3409
:::::::::::::::	chr2:122236191-122236504(-)$1	313	284	299	34.3181
ffffff]a333ccc7	chr11:93454734-93454987(+)$1	253	97	112	38.0681
uuuuuuuuuuubb]e	chr16:621133-621425(+)$1	292	49	64	38.0681
h[apppppppahhhh	chr19:1642152-1642409(-)$1	257	79	94	33.6363
=============gg	chr19:2336811-2337063(+)$1	252	22	37	38.0681
:::hhhhhhhh"""e	chr16:12354578-12354851(+)$1	273	102	117	25.6818
hhhhhhh"""=====	chr16:88960960-88961200(-)$1	240	162	177	29.6590
offffff========	chr22:19887055-19887337(-)$1	282	18	33	30.3409
meeeee=========	chr16:87771832-87772081(-)$1	249	97	112	38.0681
=22a]bb]eeeee]a	chr4:880977-881237(-)$1	260	142	157	26.0227
=[ffffffoooooof	chr17:78607820-78608096(+)$1	276	97	112	34.0909
LLLJJJJJJJJJJJK	chr11:497098-497380(-)$1	282	22	37	25.5681
hhh[eeeee[dddd[	chr7:1479213-1479500(-)$1	287	103	118	30.4545
!!===========nn	chr1:1158377-1158645(-)$1	268	65	80	26.0227
h[eeeee!!bbpppp	chr11:9450212-9450473(+)$1	261	147	162	25.2272
]cccffffff[dddd	chr21:46554281-46554513(+)$1	232	148	163	33.5227
dddd[bb[dddd[ag	chr16:89981290-89981535(+)$1	245	92	107	38.0681
ffff))))))))))f	chr19:2336609-2336963(+)$1	354	182	197	38.0681
::ddddooooooddd	chr16:89370538-89370857(-)$1	319	6	21	30.4545
=^^^^^^^^^^^^^^	chr10:103590398-103590655(-)$1	257	188	203	38.0681
!============mm	chr16:89370966-89371200(-)$1	234	105	120	29.4318
::::::ddddooooo	chr1:27561121-27561385(+)$1	264	88	103	33.9772
===========22bb	chr1:228331591-228331828(+)$1	237	183	198	33.5227
FF{BBFFFFFF::::	chr3:13415325-13415589(-)$1	264	17	32	29.7727
mccc]ccceeeee44	chr1:987550-987798(+)$1	248	143	158	26.5909
ffffff[eeeee[gg	chr11:47379918-47380227(-)$1	309	53	68	25.4545
]a]a]eeeee]a]dd	chr22:49974065-49974397(-)$1	332	143	158	38.0681
=7777777dddd]ee	chr1:42643255-42643525(-)$1	270	82	97	38.0681
cmmmmccc]ffffff	chr11:47377097-47377354(-)$1	257	80	95	34.0909
eee####ccc[bb!!	chr1:1158193-1158531(-)$1	338	131	146	23.1818
ooooooccc]dddd:	chr1:988309-988573(+)$1	264	57	72	34.4318
dddd]bbgggggggf	chr3:128216108-128216366(+)$1	258	112	127	26.2499
hh^^^^^^^^^^^^^	chr3:129113262-129113604(-)$1	342	33	48	38.0681
::::===========	chr19:3687315-3687631(-)$1	316	17	32	30.6818
22=============	chr22:49918089-49918389(-)$1	300	149	164	33.9772

#DB
(.(((((((......	chr22:19896884-19897211(-)$1	1	174	189	38.0681
....)))).))..))	chr1:109642801-109643009(+)$1	1	108	123	29.7727
).)))))).).)...	chr7:6741988-6742237(-)$1	1	61	76	38.0681
((.(((((.((.((.	chr3:51533787-51534066(-)$1	1	69	84	34.0909
....).)))).))).	chr16:23478554-23478842(-)$1	1	88	103	38.0681
.))).).))))))))	chr17:79048381-79048661(+)$1	1	98	113	29.8863
(((((((((((....	chr10:103590455-103590748(-)$1	1	98	113	34.4318
(........).))))	chr1:1276250-1276560(-)$1	1	116	131	30.4545
(((..(((((((...	chr7:1110053-1110363(-)$1	1	168	183	30.3409
...............	chr2:122236191-122236504(-)$1	1	284	299	34.3181
)))))).)...))).	chr11:93454734-93454987(+)$1	1	97	112	38.0681
...........)).)	chr16:621133-621425(+)$1	1	49	64	38.0681
(.(.......)))))	chr19:1642152-1642409(-)$1	1	79	94	33.6363
(((((((((((((((	chr19:2336811-2337063(+)$1	1	22	37	38.0681
...((((((((...(	chr16:12354578-12354851(+)$1	1	102	117	25.6818
(((((((...(((((	chr16:88960960-88961200(-)$1	1	162	177	29.6590
.))))))((((((((	chr22:19887055-19887337(-)$1	1	18	33	30.3409
.)))))(((((((((	chr16:87771832-87772081(-)$1	1	97	112	38.0681
)..).)).))))).)	chr4:880977-881237(-)$1	1	142	157	26.0227
(.((((((......)	chr17:78607820-78608096(+)$1	1	97	112	34.0909
...(((((((((((.	chr11:497098-497380(-)$1	1	22	37	25.5681
(((.(((((.((((.	chr7:1479213-1479500(-)$1	1	103	118	30.4545
..(((((((((((..	chr1:1158377-1158645(-)$1	1	65	80	26.0227
(.(((((..((....	chr11:9450212-9450473(+)$1	1	147	162	25.2272
.)))((((((.((((	chr21:46554281-46554513(+)$1	1	148	163	33.5227
((((.((.((((.((	chr16:89981290-89981535(+)$1	1	92	107	38.0681
((((..........(	chr19:2336609-2336963(+)$1	1	182	197	38.0681
..((((......)))	chr16:89370538-89370857(-)$1	1	6	21	30.4545
(..............	chr10:103590398-103590655(-)$1	1	188	203	38.0681
.((((((((((((..	chr16:89370966-89371200(-)$1	1	105	120	29.4318
......((((.....	chr1:27561121-27561385(+)$1	1	88	103	33.9772
)))))))))))..))	chr1:228331591-228331828(+)$1	1	183	198	33.5227
((.((((((((....	chr3:13415325-13415589(-)$1	1	17	32	29.7727
.))).))))))))..	chr1:987550-987798(+)$1	1	143	158	26.5909
((((((.(((((.((	chr11:47379918-47380227(-)$1	1	53	68	25.4545
.).).))))).).))	chr22:49974065-49974397(-)$1	1	143	158	38.0681
).......)))).))	chr1:42643255-42643525(-)$1	1	82	97	38.0681
(....))).))))))	chr11:47377097-47377354(-)$1	1	80	95	34.0909
(((....(((.((..	chr1:1158193-1158531(-)$1	1	131	146	23.1818
......))).)))).	chr1:988309-988573(+)$1	1	57	72	34.4318
)))).))))))))))	chr3:128216108-128216366(+)$1	1	112	127	26.2499
((.............	chr3:129113262-129113604(-)$1	1	33	48	38.0681
....(((((((((((	chr19:3687315-3687631(-)$1	1	17	32	30.6818
..)))))))))))))	chr22:49918089-49918389(-)$1	1	149	164	33.9772

#PSSM
g : 0.74	G : 0.11	C : 0.04	a : 0.04	A : 0.02	c : 0.02	
u : 0.81	U : 0.15	a : 0.02	
g : 0.84	G : 0.13	C : 0.02	
u : 0.74	U : 0.11	c : 0.06	A : 0.04	a : 0.02	
g : 0.77	G : 0.13	c : 0.04	a : 0.02	C : 0.02	
u : 0.74	U : 0.11	c : 0.06	a : 0.02	A : 0.02	G : 0.02	
g : 0.68	G : 0.13	a : 0.09	c : 0.06	C : 0.02	
u : 0.74	U : 0.15	c : 0.09	
g : 0.81	G : 0.13	C : 0.02	a : 0.02	
u : 0.72	U : 0.13	c : 0.11	C : 0.02	
g : 0.77	G : 0.15	c : 0.04	u : 0.02	
u : 0.77	U : 0.13	c : 0.04	A : 0.02	a : 0.02	
g : 0.81	G : 0.13	C : 0.02	c : 0.02	
u : 0.84	U : 0.15	
g : 0.68	G : 0.13	c : 0.09	a : 0.06	U : 0.02	

#score	1430.2272727272718
#seq	44
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_CDS_m1_run1.nuc.txt

#NT
UGUGUGUGUGC	chr11:64846431-64846684(-)$1	253	210	221	23.5952
UGUUUGUAUGU	chr1:185267181-185267450(-)$1	269	36	47	19.7857
ugugugugugu	chr1:33485600-33485916(-)$1	316	86	97	27.7619
UGUGUCAGUGU	chr2:96933482-96933758(+)$1	276	114	125	18.9523
GGUGUGUGUGG	chr10:97817576-97817842(-)$1	266	36	47	20.1428
UUUGUGUGUUU	chr9:134062516-134062806(+)$1	290	143	154	19.5476
UGUGAGUGUGU	chr19:17313647-17313987(+)$1	340	165	176	23.1190
ugugugugugu	chr3:142094649-142094939(-)$1	290	97	108	27.7619
UGUUUGUGUGG	chr6:122779562-122779827(-)$1	265	7	18	19.7857
UGUGUGUGUGG	chr5:137495169-137495485(-)$1	316	100	111	23.9523
UGUGUGUGUGU	chr8:145540667-145540934(-)$1	267	95	106	27.7619
ugugugugugu	chr11:47380057-47380360(-)$1	303	70	81	27.7619
AGUGUGUUUGU	chr10:33200766-33201037(-)$1	271	119	130	20.1428
ugugugugugu	chr1:11850804-11851097(-)$1	293	95	106	27.7619
ugugugugugu	chr11:47379875-47380255(-)$1	380	26	37	27.7619
ugugugugugu	chr17:17942628-17942926(+)$1	298	92	103	27.7619
AGUGUGUUUGU	chr10:33200861-33201105(-)$1	244	187	198	20.1428
GUUGUGUGUGU	chr17:76117682-76117980(-)$1	298	106	117	20.2619
UCUGUAUGUGU	chrX:100297155-100297459(-)$1	304	134	145	20.0238
UGUUUGUAUGU	chr1:185267250-185267513(-)$1	263	99	110	19.7857
ugugugugugu	chr19:17397402-17397663(+)$1	261	55	66	27.7619
CGUGUGUGUGU	chr17:40717395-40717666(+)$1	271	98	109	23.7142
UGUGUGUGUGU	chr6:42994712-42994971(+)$1	259	98	109	27.7619
UGUGUGUCUGA	chr11:32608569-32608791(+)$1	222	95	106	19.5476
UGUGUAUGUUU	chr3:64008340-64008643(-)$1	303	104	115	19.3095
UGUGUGUAUGU	chr8:141745340-141745657(-)$1	317	104	115	23.9523
AGUGUGUUUGU	chr10:33200905-33201150(-)$1	245	232	243	20.1428
UGUGUGUGUGU	chr19:2206601-2206873(+)$1	272	22	33	27.7619
ugugugugugu	chr22:24439214-24439499(+)$1	285	52	63	27.7619
UGUGUGUGUGU	chr20:62562304-62562574(+)$1	270	94	105	27.7619
UGUGUGUGUGU	chr4:174253130-174253337(-)$1	207	136	147	27.7619
UGUGUAUGAGU	chr15:45007753-45007966(+)$1	213	181	192	19.0714
GGUGUGUGUGG	chr10:97817642-97817916(-)$1	274	110	121	20.1428
UCCGUGUGUGU	chr15:28520018-28520290(-)$1	272	119	130	19.1904
ugugugugugu	chr6:43521098-43521375(-)$1	277	89	100	27.7619
ugugugugugu	chr1:12252201-12252505(+)$1	304	132	143	27.7619
UUUGCGUGUGU	chr7:889061-889332(+)$1	271	79	90	19.4285
ugugugugugu	chr6:36483134-36483416(-)$1	282	83	94	27.7619
UCUGUGUGUGU	chr17:55187229-55187519(+)$1	290	118	129	23.9523
UGUCUUUGUGU	chr3:47747851-47748123(-)$1	272	9	20	19.1904
ugugugugugu	chr3:197562407-197562698(+)$1	291	99	110	27.7619

#otherMatches

#Struct PSSM
DDDD{EEEEEL	chr7:99077330-99077598(+)$1	268	105	116	20.0238
>a]a]ccc]dd	chr11:64846431-64846684(-)$1	253	210	221	23.5952
::HHHHHHHH{	chr1:185267181-185267450(-)$1	269	36	47	19.7857
nnnccc22ddd	chr1:33485600-33485916(-)$1	316	86	97	27.7619
nnnnccc5555	chr2:96933482-96933758(+)$1	276	114	125	18.9523
HHHHHHH:::d	chr10:97817576-97817842(-)$1	266	36	47	20.1428
eee]ccc5555	chr9:134062516-134062806(+)$1	290	143	154	19.5476
JJJLLLIIIII	chr19:17313647-17313987(+)$1	340	165	176	23.1190
+++========	chr3:142094649-142094939(-)$1	290	97	108	27.7619
::EEEEE{BB{	chr6:122779562-122779827(-)$1	265	7	18	19.7857
fffff]a]fff	chr5:137495169-137495485(-)$1	316	100	111	23.9523
hhhh"""ccc[	chr8:145540667-145540934(-)$1	267	95	106	27.7619
]ccc]eeeee2	chr11:47380057-47380360(-)$1	303	70	81	27.7619
=lll=======	chr10:33200766-33201037(-)$1	271	119	130	20.1428
iii$$$$$eee	chr1:11850804-11851097(-)$1	293	95	106	27.7619
::::::::::H	chr11:47379875-47380255(-)$1	380	26	37	27.7619
]ccc]a]bb44	chr17:17942628-17942926(+)$1	298	92	103	27.7619
=lll=======	chr10:33200861-33201105(-)$1	244	187	198	20.1428
DDD{AKKA{JJ	chr17:76117682-76117980(-)$1	298	106	117	20.2619
dddd22dddd]	chrX:100297155-100297459(-)$1	304	134	145	20.0238
$dddd[ddddg	chr1:185267250-185267513(-)$1	263	99	110	19.7857
22ccc]ccc22	chr19:17397402-17397663(+)$1	261	55	66	27.7619
a]dddd:dddd	chr17:40717395-40717666(+)$1	271	98	109	23.7142
fff!!bb[bb%	chr6:42994712-42994971(+)$1	259	98	109	27.7619
g$$$$$bb!!i	chr11:32608569-32608791(+)$1	222	95	106	19.5476
:::::::::::	chr3:64008340-64008643(-)$1	303	104	115	19.3095
mmccc4444ff	chr8:141745340-141745657(-)$1	317	104	115	23.9523
illliiiiiii	chr10:33200905-33201150(-)$1	245	232	243	20.1428
GGGGGGGMMMM	chr19:2206601-2206873(+)$1	272	22	33	27.7619
b]a]a]bb]ff	chr22:24439214-24439499(+)$1	285	52	63	27.7619
i[bb!!a[ccc	chr20:62562304-62562574(+)$1	270	94	105	27.7619
fffff:::FFF	chr4:174253130-174253337(-)$1	207	136	147	27.7619
eeeeeeeeemm	chr15:45007753-45007966(+)$1	213	181	192	19.0714
eeeee[a[a[c	chr10:97817642-97817916(-)$1	274	110	121	20.1428
lldddd66666	chr15:28520018-28520290(-)$1	272	119	130	19.1904
eee::::::::	chr6:43521098-43521375(-)$1	277	89	100	27.7619
bb]a22dddd]	chr1:12252201-12252505(+)$1	304	132	143	27.7619
=======!!cc	chr7:889061-889332(+)$1	271	79	90	19.4285
CCC{A{DDDD{	chr6:36483134-36483416(-)$1	282	83	94	27.7619
======cccbb	chr17:55187229-55187519(+)$1	290	118	129	23.9523
BMMMMGGGGGG	chr3:47747851-47748123(-)$1	272	9	20	19.1904
%%%%a[dddd[	chr3:197562407-197562698(+)$1	291	99	110	27.7619

#DB
((((.(((((.	chr7:99077330-99077598(+)$1	1	105	116	20.0238
.).).))).))	chr11:64846431-64846684(-)$1	1	210	221	23.5952
..((((((((.	chr1:185267181-185267450(-)$1	1	36	47	19.7857
...)))..)))	chr1:33485600-33485916(-)$1	1	86	97	27.7619
....)))....	chr2:96933482-96933758(+)$1	1	114	125	18.9523
(((((((...(	chr10:97817576-97817842(-)$1	1	36	47	20.1428
))).)))....	chr9:134062516-134062806(+)$1	1	143	154	19.5476
(((...(((((	chr19:17313647-17313987(+)$1	1	165	176	23.1190
...((((((((	chr3:142094649-142094939(-)$1	1	97	108	27.7619
..(((((.((.	chr6:122779562-122779827(-)$1	1	7	18	19.7857
))))).).)))	chr5:137495169-137495485(-)$1	1	100	111	23.9523
((((...(((.	chr8:145540667-145540934(-)$1	1	95	106	27.7619
.))).))))).	chr11:47380057-47380360(-)$1	1	70	81	27.7619
(...)))))))	chr10:33200766-33201037(-)$1	1	119	130	20.1428
(((.....(((	chr1:11850804-11851097(-)$1	1	95	106	27.7619
..........(	chr11:47379875-47380255(-)$1	1	26	37	27.7619
.))).).))..	chr17:17942628-17942926(+)$1	1	92	103	27.7619
(...)))))))	chr10:33200861-33201105(-)$1	1	187	198	20.1428
(((.(..(.((	chr17:76117682-76117980(-)$1	1	106	117	20.2619
))))..)))).	chrX:100297155-100297459(-)$1	1	134	145	20.0238
.((((.(((((	chr1:185267250-185267513(-)$1	1	99	110	19.7857
..))).)))..	chr19:17397402-17397663(+)$1	1	55	66	27.7619
).)))).((((	chr17:40717395-40717666(+)$1	1	98	109	23.7142
(((..((.((.	chr6:42994712-42994971(+)$1	1	98	109	27.7619
(.....((..(	chr11:32608569-32608791(+)$1	1	95	106	19.5476
...........	chr3:64008340-64008643(-)$1	1	104	115	19.3095
..)))....))	chr8:141745340-141745657(-)$1	1	104	115	23.9523
(...)))))))	chr10:33200905-33201150(-)$1	1	232	243	20.1428
(((((((....	chr19:2206601-2206873(+)$1	1	22	33	27.7619
).).).)).))	chr22:24439214-24439499(+)$1	1	52	63	27.7619
(.((..(.(((	chr20:62562304-62562574(+)$1	1	94	105	27.7619
)))))...(((	chr4:174253130-174253337(-)$1	1	136	147	27.7619
(((((((((..	chr15:45007753-45007966(+)$1	1	181	192	19.0714
(((((.(.(.(	chr10:97817642-97817916(-)$1	1	110	121	20.1428
..)))).....	chr15:28520018-28520290(-)$1	1	119	130	19.1904
)))........	chr6:43521098-43521375(-)$1	1	89	100	27.7619
)).)..)))).	chr1:12252201-12252505(+)$1	1	132	143	27.7619
(((((((..((	chr7:889061-889332(+)$1	1	79	90	19.4285
(((.(.((((.	chr6:36483134-36483416(-)$1	1	83	94	27.7619
(((((((((((	chr17:55187229-55187519(+)$1	1	118	129	23.9523
(....((((((	chr3:47747851-47748123(-)$1	1	9	20	19.1904
....(.((((.	chr3:197562407-197562698(+)$1	1	99	110	27.7619

#PSSM
U : 0.54	u : 0.28	G : 0.07	A : 0.07	C : 0.02	
G : 0.54	g : 0.28	U : 0.09	C : 0.07	
U : 0.69	u : 0.28	C : 0.02	
G : 0.61	g : 0.28	U : 0.07	C : 0.02	
U : 0.66	u : 0.28	A : 0.02	C : 0.02	
G : 0.57	g : 0.28	A : 0.07	C : 0.04	U : 0.02	
U : 0.69	u : 0.28	A : 0.02	
G : 0.54	g : 0.28	A : 0.07	U : 0.07	C : 0.02	
U : 0.69	u : 0.28	A : 0.02	
G : 0.66	g : 0.28	U : 0.04	
U : 0.57	u : 0.28	G : 0.09	C : 0.02	A : 0.02	

#score	988.8571428571436
#seq	42
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_CDS_m1_run2.nuc.txt

#NT
CCUC	chr20:39797250-39797510(+)$1	260	147	151	11.9999
CCUC	chr1:32792948-32793250(+)$1	302	19	23	11.9999
ccuc	chr4:8220872-8221185(+)$1	313	11	15	11.9999
CCUC	chr17:62126453-62126711(-)$1	258	77	81	11.9999
CCUC	chr20:61574671-61574950(+)$1	279	79	83	11.9999
CCUC	chr16:89334960-89335239(-)$1	279	133	137	11.9999
CCUC	chr18:21119322-21119588(-)$1	266	111	115	11.9999
CCUC	chr5:175955970-175956242(-)$1	272	27	31	11.9999
CCUC	chr17:80559028-80559279(+)$1	251	134	138	11.9999
CCUC	chr17:4576645-4576954(-)$1	309	1	5	11.9999
CCUC	chr6:41558767-41559076(+)$1	309	14	18	11.9999
CCUC	chr1:3395927-3396186(+)$1	259	210	214	11.9999
CCUC	chr6:43042208-43042461(+)$1	253	162	166	11.9999
CCUC	chr22:50171350-50171618(-)$1	268	244	248	11.9999
CCUC	chr3:47048897-47049152(+)$1	255	2	6	11.9999
CCUC	chr6:33638767-33639053(+)$1	286	25	29	11.9999
CCUC	chr11:70262970-70263238(+)$1	268	109	113	11.9999
CCUC	chr12:96350305-96350581(+)$1	276	104	108	11.9999
CCUC	chr1:981629-981883(+)$1	254	130	134	11.9999
CCUC	chr16:2222291-2222573(+)$1	282	93	97	11.9999
CCUC	chr19:36235216-36235486(-)$1	270	146	150	11.9999
CCUC	chr19:50363087-50363363(+)$1	276	16	20	11.9999
CCUC	chr12:120587415-120587701(-)$1	286	244	248	11.9999
CCUC	chr6:43097310-43097577(+)$1	267	16	20	11.9999
CCUC	chr1:44131219-44131521(+)$1	302	110	114	11.9999
CCUC	chr22:50689197-50689533(-)$1	336	169	173	11.9999
CCUC	chr1:45269856-45270138(+)$1	282	136	140	11.9999
CCUC	chr21:45221999-45222258(+)$1	259	97	101	11.9999
CCUC	chr16:461212-461476(+)$1	264	66	70	11.9999
CCUC	chr20:4167722-4168022(+)$1	300	85	89	11.9999
CCUC	chr19:59056993-59057258(+)$1	265	197	201	11.9999
CCUC	chr17:72768071-72768370(-)$1	299	102	106	11.9999
CCUC	chr10:105177376-105177649(+)$1	273	46	50	11.9999
CCUC	chr19:875316-875626(-)$1	310	104	108	11.9999
CCUC	chr20:47614702-47614978(+)$1	276	103	107	11.9999
CCUC	chr9:137320771-137321075(+)$1	304	25	29	11.9999
CCUC	chr19:617756-618004(-)$1	248	59	63	11.9999
CCUC	chr1:19505606-19505871(-)$1	265	223	227	11.9999
CCUC	chr5:109200597-109200854(+)$1	257	174	178	11.9999
CCUC	chr11:72552526-72552796(-)$1	270	32	36	11.9999
CCUC	chr13:113485527-113485796(+)$1	269	120	124	11.9999
CCUC	chr19:50363373-50363615(+)$1	242	80	84	11.9999
CCUC	chr4:1222009-1222295(-)$1	286	21	25	11.9999
CCUC	chr13:100953572-100953834(+)$1	262	216	220	11.9999
CCUC	chr11:418885-419158(-)$1	273	68	72	11.9999
CCUC	chr1:888565-888867(-)$1	302	3	7	11.9999
CCUC	chr17:40061801-40062071(-)$1	270	88	92	11.9999
CCUC	chr13:111545497-111545780(-)$1	283	251	255	11.9999
CCUC	chr17:7749988-7750247(+)$1	259	8	12	11.9999
ccuc	chr17:75478075-75478349(+)$1	274	42	46	11.9999
CCUC	chr2:27258280-27258564(+)$1	284	20	24	11.9999
ccuc	chr11:62549998-62550285(+)$1	287	9	13	11.9999
CCUC	chr3:13373779-13374071(-)$1	292	16	20	11.9999
CCUC	chr17:80207323-80207628(-)$1	305	129	133	11.9999
CCUC	chr2:74230080-74230344(+)$1	264	46	50	11.9999
CCUC	chr16:88105514-88105785(+)$1	271	16	20	11.9999
CCUC	chr16:67984508-67984753(-)$1	245	215	219	11.9999
CCUC	chr20:62572308-62572553(-)$1	245	3	7	11.9999
CCUC	chr19:2235738-2236016(-)$1	278	64	68	11.9999
CCUC	chr20:55967553-55967831(+)$1	278	42	46	11.9999
CCUC	chr7:99696709-99696995(-)$1	286	203	207	11.9999
CCUC	chr1:205492424-205492728(+)$1	304	26	30	11.9999
CCUC	chr20:36030635-36030944(+)$1	309	74	78	11.9999
CCUC	chr8:134260899-134261204(-)$1	305	1	5	11.9999
CCUC	chr19:55697803-55698055(-)$1	252	63	67	11.9999
CCUC	chr17:19458948-19459208(+)$1	260	5	9	11.9999
CCUC	chr22:50885561-50885827(-)$1	266	204	208	11.9999
CCUC	chr16:58549940-58550207(+)$1	267	159	163	11.9999
CCUC	chr22:31493098-31493355(+)$1	257	79	83	11.9999
CCUC	chr1:226046939-226047221(-)$1	282	1	5	11.9999
ccuc	chr1:236706707-236706970(+)$1	263	34	38	11.9999
CCUC	chr9:139753510-139753764(+)$1	254	98	102	11.9999
CCUC	chr22:41651987-41652264(-)$1	277	88	92	11.9999
CCUC	chr20:60737644-60737926(+)$1	282	214	218	11.9999
CCUC	chr16:4390884-4391128(-)$1	244	0	4	11.9999
CCUC	chr1:1154236-1154479(-)$1	243	82	86	11.9999
CCUC	chr1:45323377-45323625(-)$1	248	118	122	11.9999
CCUC	chr17:79059295-79059564(+)$1	269	39	43	11.9999
CCUC	chr19:1271136-1271368(+)$1	232	178	182	11.9999
CCUC	chr9:95018966-95019228(-)$1	262	89	93	11.9999
CCUC	chr16:89865532-89865800(-)$1	268	51	55	11.9999
CCUC	chr1:201115875-201116132(-)$1	257	26	30	11.9999
CCUC	chr17:2239310-2239601(-)$1	291	32	36	11.9999
CCUC	chr4:2833491-2833759(+)$1	268	148	152	11.9999

#otherMatches

#Struct PSSM
a22h	chr7:4828318-4828577(+)$1	259	146	150	11.9999
ffff	chr20:39797250-39797510(+)$1	260	147	151	11.9999
dd::	chr1:32792948-32793250(+)$1	302	19	23	11.9999
[a!!	chr4:8220872-8221185(+)$1	313	11	15	11.9999
eeee	chr17:62126453-62126711(-)$1	258	77	81	11.9999
dd$$	chr20:61574671-61574950(+)$1	279	79	83	11.9999
BBKK	chr16:89334960-89335239(-)$1	279	133	137	11.9999
hhh:	chr18:21119322-21119588(-)$1	266	111	115	11.9999
ffff	chr5:175955970-175956242(-)$1	272	27	31	11.9999
hhhh	chr17:80559028-80559279(+)$1	251	134	138	11.9999
eeee	chr17:4576645-4576954(-)$1	309	1	5	11.9999
DDDD	chr6:41558767-41559076(+)$1	309	14	18	11.9999
FFFd	chr1:3395927-3396186(+)$1	259	210	214	11.9999
hhhh	chr6:43042208-43042461(+)$1	253	162	166	11.9999
B}FF	chr22:50171350-50171618(-)$1	268	244	248	11.9999
::::	chr3:47048897-47049152(+)$1	255	2	6	11.9999
ccc]	chr6:33638767-33639053(+)$1	286	25	29	11.9999
CCBB	chr11:70262970-70263238(+)$1	268	109	113	11.9999
oooo	chr12:96350305-96350581(+)$1	276	104	108	11.9999
::::	chr1:981629-981883(+)$1	254	130	134	11.9999
fff#	chr16:2222291-2222573(+)$1	282	93	97	11.9999
gggg	chr19:36235216-36235486(-)$1	270	146	150	11.9999
LLBB	chr19:50363087-50363363(+)$1	276	16	20	11.9999
ssss	chr12:120587415-120587701(-)$1	286	244	248	11.9999
dd!!	chr6:43097310-43097577(+)$1	267	16	20	11.9999
!!bb	chr1:44131219-44131521(+)$1	302	110	114	11.9999
!ccc	chr22:50689197-50689533(-)$1	336	169	173	11.9999
2eee	chr1:45269856-45270138(+)$1	282	136	140	11.9999
ffff	chr21:45221999-45222258(+)$1	259	97	101	11.9999
FFFF	chr16:461212-461476(+)$1	264	66	70	11.9999
llld	chr20:4167722-4168022(+)$1	300	85	89	11.9999
JJJ}	chr19:59056993-59057258(+)$1	265	197	201	11.9999
E{DD	chr17:72768071-72768370(-)$1	299	102	106	11.9999
JJJQ	chr10:105177376-105177649(+)$1	273	46	50	11.9999
ddoo	chr19:875316-875626(-)$1	310	104	108	11.9999
##dd	chr20:47614702-47614978(+)$1	276	103	107	11.9999
hhhh	chr9:137320771-137321075(+)$1	304	25	29	11.9999
ccc[	chr19:617756-618004(-)$1	248	59	63	11.9999
>>>>	chr1:19505606-19505871(-)$1	265	223	227	11.9999
bppp	chr5:109200597-109200854(+)$1	257	174	178	11.9999
:ccc	chr11:72552526-72552796(-)$1	270	32	36	11.9999
lllc	chr13:113485527-113485796(+)$1	269	120	124	11.9999
fffl	chr19:50363373-50363615(+)$1	242	80	84	11.9999
DD{B	chr4:1222009-1222295(-)$1	286	21	25	11.9999
@@@@	chr13:100953572-100953834(+)$1	262	216	220	11.9999
::::	chr11:418885-419158(-)$1	273	68	72	11.9999
:III	chr1:888565-888867(-)$1	302	3	7	11.9999
eooo	chr17:40061801-40062071(-)$1	270	88	92	11.9999
3ddd	chr13:111545497-111545780(-)$1	283	251	255	11.9999
LLLF	chr17:7749988-7750247(+)$1	259	8	12	11.9999
f22a	chr17:75478075-75478349(+)$1	274	42	46	11.9999
IIII	chr2:27258280-27258564(+)$1	284	20	24	11.9999
FF::	chr11:62549998-62550285(+)$1	287	9	13	11.9999
ee::	chr3:13373779-13374071(-)$1	292	16	20	11.9999
eddd	chr17:80207323-80207628(-)$1	305	129	133	11.9999
>>>>	chr2:74230080-74230344(+)$1	264	46	50	11.9999
EEE{	chr16:88105514-88105785(+)$1	271	16	20	11.9999
eeee	chr16:67984508-67984753(-)$1	245	215	219	11.9999
C:::	chr20:62572308-62572553(-)$1	245	3	7	11.9999
:a[i	chr19:2235738-2236016(-)$1	278	64	68	11.9999
dddd	chr20:55967553-55967831(+)$1	278	42	46	11.9999
b333	chr7:99696709-99696995(-)$1	286	203	207	11.9999
gggg	chr1:205492424-205492728(+)$1	304	26	30	11.9999
hhhh	chr20:36030635-36030944(+)$1	309	74	78	11.9999
DDDN	chr8:134260899-134261204(-)$1	305	1	5	11.9999
b[bb	chr19:55697803-55698055(-)$1	252	63	67	11.9999
::::	chr17:19458948-19459208(+)$1	260	5	9	11.9999
>>>>	chr22:50885561-50885827(-)$1	266	204	208	11.9999
na]c	chr16:58549940-58550207(+)$1	267	159	163	11.9999
:bbo	chr22:31493098-31493355(+)$1	257	79	83	11.9999
::::	chr1:226046939-226047221(-)$1	282	1	5	11.9999
ccmm	chr1:236706707-236706970(+)$1	263	34	38	11.9999
mmmm	chr9:139753510-139753764(+)$1	254	98	102	11.9999
fffo	chr22:41651987-41652264(-)$1	277	88	92	11.9999
6bb]	chr20:60737644-60737926(+)$1	282	214	218	11.9999
HHHH	chr16:4390884-4391128(-)$1	244	0	4	11.9999
ccc[	chr1:1154236-1154479(-)$1	243	82	86	11.9999
++++	chr1:45323377-45323625(-)$1	248	118	122	11.9999
ffff	chr17:79059295-79059564(+)$1	269	39	43	11.9999
d:ff	chr19:1271136-1271368(+)$1	232	178	182	11.9999
pppp	chr9:95018966-95019228(-)$1	262	89	93	11.9999
:ggg	chr16:89865532-89865800(-)$1	268	51	55	11.9999
e%%%	chr1:201115875-201116132(-)$1	257	26	30	11.9999
FFFF	chr17:2239310-2239601(-)$1	291	32	36	11.9999
mmmm	chr4:2833491-2833759(+)$1	268	148	152	11.9999

#DB
)..)	chr7:4828318-4828577(+)$1	1	146	150	11.9999
((((	chr20:39797250-39797510(+)$1	1	147	151	11.9999
))..	chr1:32792948-32793250(+)$1	1	19	23	11.9999
.(..	chr4:8220872-8221185(+)$1	1	11	15	11.9999
((((	chr17:62126453-62126711(-)$1	1	77	81	11.9999
((..	chr20:61574671-61574950(+)$1	1	79	83	11.9999
((..	chr16:89334960-89335239(-)$1	1	133	137	11.9999
))).	chr18:21119322-21119588(-)$1	1	111	115	11.9999
))))	chr5:175955970-175956242(-)$1	1	27	31	11.9999
))))	chr17:80559028-80559279(+)$1	1	134	138	11.9999
((((	chr17:4576645-4576954(-)$1	1	1	5	11.9999
((((	chr6:41558767-41559076(+)$1	1	14	18	11.9999
)))(	chr1:3395927-3396186(+)$1	1	210	214	11.9999
))))	chr6:43042208-43042461(+)$1	1	162	166	11.9999
).))	chr22:50171350-50171618(-)$1	1	244	248	11.9999
....	chr3:47048897-47049152(+)$1	1	2	6	11.9999
))).	chr6:33638767-33639053(+)$1	1	25	29	11.9999
((((	chr11:70262970-70263238(+)$1	1	109	113	11.9999
....	chr12:96350305-96350581(+)$1	1	104	108	11.9999
....	chr1:981629-981883(+)$1	1	130	134	11.9999
(((.	chr16:2222291-2222573(+)$1	1	93	97	11.9999
))((	chr19:36235216-36235486(-)$1	1	146	150	11.9999
..((	chr19:50363087-50363363(+)$1	1	16	20	11.9999
....	chr12:120587415-120587701(-)$1	1	244	248	11.9999
((..	chr6:43097310-43097577(+)$1	1	16	20	11.9999
..((	chr1:44131219-44131521(+)$1	1	110	114	11.9999
.(((	chr22:50689197-50689533(-)$1	1	169	173	11.9999
.)))	chr1:45269856-45270138(+)$1	1	136	140	11.9999
))))	chr21:45221999-45222258(+)$1	1	97	101	11.9999
((((	chr16:461212-461476(+)$1	1	66	70	11.9999
...)	chr20:4167722-4168022(+)$1	1	85	89	11.9999
))).	chr19:59056993-59057258(+)$1	1	197	201	11.9999
(.((	chr17:72768071-72768370(-)$1	1	102	106	11.9999
(((.	chr10:105177376-105177649(+)$1	1	46	50	11.9999
((..	chr19:875316-875626(-)$1	1	104	108	11.9999
..((	chr20:47614702-47614978(+)$1	1	103	107	11.9999
((((	chr9:137320771-137321075(+)$1	1	25	29	11.9999
(((.	chr19:617756-618004(-)$1	1	59	63	11.9999
....	chr1:19505606-19505871(-)$1	1	223	227	11.9999
(...	chr5:109200597-109200854(+)$1	1	174	178	11.9999
.(((	chr11:72552526-72552796(-)$1	1	32	36	11.9999
...)	chr13:113485527-113485796(+)$1	1	120	124	11.9999
(((.	chr19:50363373-50363615(+)$1	1	80	84	11.9999
((.(	chr4:1222009-1222295(-)$1	1	21	25	11.9999
....	chr13:100953572-100953834(+)$1	1	216	220	11.9999
....	chr11:418885-419158(-)$1	1	68	72	11.9999
.(((	chr1:888565-888867(-)$1	1	3	7	11.9999
(...	chr17:40061801-40062071(-)$1	1	88	92	11.9999
.)))	chr13:111545497-111545780(-)$1	1	251	255	11.9999
...(	chr17:7749988-7750247(+)$1	1	8	12	11.9999
)..)	chr17:75478075-75478349(+)$1	1	42	46	11.9999
((((	chr2:27258280-27258564(+)$1	1	20	24	11.9999
((..	chr11:62549998-62550285(+)$1	1	9	13	11.9999
))..	chr3:13373779-13374071(-)$1	1	16	20	11.9999
)(((	chr17:80207323-80207628(-)$1	1	129	133	11.9999
....	chr2:74230080-74230344(+)$1	1	46	50	11.9999
(((.	chr16:88105514-88105785(+)$1	1	16	20	11.9999
))))	chr16:67984508-67984753(-)$1	1	215	219	11.9999
(...	chr20:62572308-62572553(-)$1	1	3	7	11.9999
.(.(	chr19:2235738-2236016(-)$1	1	64	68	11.9999
))))	chr20:55967553-55967831(+)$1	1	42	46	11.9999
)...	chr7:99696709-99696995(-)$1	1	203	207	11.9999
))))	chr1:205492424-205492728(+)$1	1	26	30	11.9999
((((	chr20:36030635-36030944(+)$1	1	74	78	11.9999
(((.	chr8:134260899-134261204(-)$1	1	1	5	11.9999
(.((	chr19:55697803-55698055(-)$1	1	63	67	11.9999
....	chr17:19458948-19459208(+)$1	1	5	9	11.9999
....	chr22:50885561-50885827(-)$1	1	204	208	11.9999
.).)	chr16:58549940-58550207(+)$1	1	159	163	11.9999
.((.	chr22:31493098-31493355(+)$1	1	79	83	11.9999
....	chr1:226046939-226047221(-)$1	1	1	5	11.9999
((..	chr1:236706707-236706970(+)$1	1	34	38	11.9999
....	chr9:139753510-139753764(+)$1	1	98	102	11.9999
(((.	chr22:41651987-41652264(-)$1	1	88	92	11.9999
.)).	chr20:60737644-60737926(+)$1	1	214	218	11.9999
((((	chr16:4390884-4391128(-)$1	1	0	4	11.9999
(((.	chr1:1154236-1154479(-)$1	1	82	86	11.9999
....	chr1:45323377-45323625(-)$1	1	118	122	11.9999
))))	chr17:79059295-79059564(+)$1	1	39	43	11.9999
).((	chr19:1271136-1271368(+)$1	1	178	182	11.9999
....	chr9:95018966-95019228(-)$1	1	89	93	11.9999
.(((	chr16:89865532-89865800(-)$1	1	51	55	11.9999
(...	chr1:201115875-201116132(-)$1	1	26	30	11.9999
((((	chr17:2239310-2239601(-)$1	1	32	36	11.9999
....	chr4:2833491-2833759(+)$1	1	148	152	11.9999

#PSSM
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
C : 0.95	c : 0.04	

#score	1019.9999999999998
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_UTR_m1_run1.nuc.txt

#NT
GCUGA	chr15:75654140-75654389(-)$1	249	64	69	11.1445
GCUGU	chr21:45744274-45744524(+)$1	250	100	105	11.1445
GCUGU	chr12:31250779-31251031(+)$1	252	83	88	11.1445
GCUGG	chr19:40748433-40748696(-)$1	263	13	18	11.3855
GCUGU	chr19:19135401-19135704(-)$1	303	48	53	11.1445
GCUGG	chr1:32843715-32843949(-)$1	234	1	6	11.3855
GCUGA	chr5:137501417-137501643(-)$1	226	37	42	11.1445
GCUGG	chr21:45736270-45736506(+)$1	236	6	11	11.3855
GCUGA	chr1:8568599-8568835(-)$1	236	104	109	11.1445
GCUGA	chr19:7707775-7708014(+)$1	239	149	154	11.1445
GCUGC	chr3:9729436-9729675(+)$1	239	21	26	11.3253
GCUGG	chr7:1477473-1477709(-)$1	236	37	42	11.3855
gcugg	chr12:53858446-53858666(+)$1	220	37	42	11.3855
GCUGG	chr15:42867759-42868049(+)$1	290	66	71	11.3855
GCUGC	chr1:180601132-180601484(+)$1	352	54	59	11.3253
GCUGC	chr9:139906286-139906572(-)$1	286	102	107	11.3253
GCUGU	chr6:52938178-52938455(+)$1	277	84	89	11.1445
GCUGC	chr17:26918680-26918911(-)$1	231	14	19	11.3253
GCUGU	chr7:120737663-120737920(+)$1	257	219	224	11.1445
GCUGC	chr9:114159305-114159532(-)$1	227	147	152	11.3253
GCUGU	chrX:153176501-153176742(-)$1	241	61	66	11.1445
GCUGA	chr7:86811439-86811700(+)$1	261	79	84	11.1445
GCUGU	chr20:34300907-34301120(-)$1	213	170	175	11.1445
GCUGA	chr12:51100271-51100540(+)$1	269	115	120	11.1445
GCUGU	chr14:70237681-70237922(+)$1	241	13	18	11.1445
GCUGG	chr10:69773732-69774042(-)$1	310	168	173	11.3855
GCUGA	chr12:6637743-6637969(+)$1	226	25	30	11.1445
GCUGC	chr16:22336984-22337221(+)$1	237	15	20	11.3253
GCUGA	chr20:33954259-33954506(-)$1	247	196	201	11.1445
GCUGG	chr1:39776442-39776704(+)$1	262	254	259	11.3855
GCUGA	chr12:112513381-112513636(-)$1	255	101	106	11.1445
GCUGU	chr19:1422245-1422501(+)$1	256	31	36	11.1445
GCUGA	chr6:29588915-29589170(-)$1	255	158	163	11.1445
GCUGA	chr9:95049979-95050217(-)$1	238	133	138	11.1445
GCUGC	chr7:931907-932156(+)$1	249	106	111	11.3253
GCUGA	chr19:7703526-7703757(+)$1	231	14	19	11.1445
GCUGC	chr3:176769338-176769619(-)$1	281	228	233	11.3253
GCUGU	chr17:40865222-40865508(-)$1	286	212	217	11.1445
GCUGG	chr12:31242234-31242580(+)$1	346	59	64	11.3855
GCUGC	chr19:2040033-2040260(-)$1	227	45	50	11.3253
GCUGG	chr19:52709115-52709370(+)$1	255	47	52	11.3855
GCUGC	chr15:72557321-72557556(-)$1	235	97	102	11.3253
GCUGU	chr9:95032145-95032365(-)$1	220	12	17	11.1445
GCUGG	chr11:118963004-118963248(+)$1	244	17	22	11.3855
GCUGU	chr6:31619949-31620209(-)$1	260	115	120	11.1445
GCUGC	chr5:94859392-94859630(-)$1	238	92	97	11.3253
GCUGC	chr4:1953734-1953990(+)$1	256	70	75	11.3253
GCUGG	chr17:79479465-79479700(-)$1	235	0	5	11.3855
GCUGU	chr19:46116698-46116928(-)$1	230	37	42	11.1445
GCUGC	chr3:9489327-9489592(+)$1	265	48	53	11.3253
GCUGU	chr6:31930437-31930674(+)$1	237	59	64	11.1445
gcUGA	chr3:184039764-184039983(+)$1	219	27	32	11.1445
GCUGU	chrX:48664956-48665213(+)$1	257	12	17	11.1445
GCUGA	chr22:22313858-22314070(-)$1	212	8	13	11.1445
gcuGC	chr17:34866968-34867399(-)$1	431	1	6	11.3253
GCUGG	chr17:7127431-7127650(+)$1	219	11	16	11.3855
GCUGU	chr19:49119087-49119303(-)$1	216	1	6	11.1445
GCUGC	chr6:30883101-30883331(+)$1	230	77	82	11.3253
GCUGG	chr1:150297384-150297646(+)$1	262	36	41	11.3855
GCUGA	chr17:76198478-76198727(+)$1	249	70	75	11.1445
GCUGA	chr12:9096317-9096599(-)$1	282	106	111	11.1445
GCUGA	chr3:9984433-9984679(+)$1	246	101	106	11.1445
GCUGG	chr17:5436041-5436281(-)$1	240	157	162	11.3855
GCUGC	chr11:66133305-66133573(-)$1	268	59	64	11.3253
GCUGG	chr19:1009917-1010226(-)$1	309	90	95	11.3855
GCUGG	chr7:127964631-127964845(-)$1	214	98	103	11.3855
GCUGU	chr7:151918999-151919251(-)$1	252	115	120	11.1445
GCUGC	chr12:48189040-48189271(-)$1	231	19	24	11.3253
GCUGC	chr19:34859441-34859691(+)$1	250	57	62	11.3253
GCUGG	chr11:3033381-3033607(-)$1	226	196	201	11.3855
GCUGG	chr5:151179678-151179913(+)$1	235	108	113	11.3855
GCUGG	chr1:226066960-226067190(-)$1	230	2	7	11.3855
gcugu	chr2:86343584-86343822(+)$1	238	21	26	11.1445
GCUGC	chr11:77669689-77669908(-)$1	219	70	75	11.3253
GCUGG	chr5:151166084-151166384(+)$1	300	123	128	11.3855
GCUGU	chr6:56963782-56964035(+)$1	253	241	246	11.1445
GCUGC	chr7:120591117-120591390(+)$1	273	1	6	11.3253
GCUGG	chr1:153918932-153919217(-)$1	285	9	14	11.3855
GCUGC	chr5:878362-878658(-)$1	296	138	143	11.3253
GCUGA	chr2:232576573-232576794(+)$1	221	50	55	11.1445
GCUGG	chr5:179045045-179045277(-)$1	232	59	64	11.3855
GCUGA	chr11:62652933-62653180(+)$1	247	62	67	11.1445

#otherMatches

#Struct PSSM
DDDCC	chr13:114786780-114787028(-)$1	248	1	6	11.3253
{CCC:	chr15:75654140-75654389(-)$1	249	64	69	11.1445
[dddd	chr21:45744274-45744524(+)$1	250	100	105	11.1445
eeeee	chr12:31250779-31251031(+)$1	252	83	88	11.1445
DDEEE	chr19:40748433-40748696(-)$1	263	13	18	11.3855
HHHLL	chr19:19135401-19135704(-)$1	303	48	53	11.1445
!!eee	chr1:32843715-32843949(-)$1	234	1	6	11.3855
JJJJJ	chr5:137501417-137501643(-)$1	226	37	42	11.1445
BB:ee	chr21:45736270-45736506(+)$1	236	6	11	11.3855
mbbff	chr1:8568599-8568835(-)$1	236	104	109	11.1445
]ccc4	chr19:7707775-7708014(+)$1	239	149	154	11.1445
TTTTT	chr3:9729436-9729675(+)$1	239	21	26	11.3253
f!!hh	chr7:1477473-1477709(-)$1	236	37	42	11.3855
!eeee	chr12:53858446-53858666(+)$1	220	37	42	11.3855
ffff]	chr15:42867759-42868049(+)$1	290	66	71	11.3855
DDD{C	chr1:180601132-180601484(+)$1	352	54	59	11.3253
dddd"	chr9:139906286-139906572(-)$1	286	102	107	11.3253
IIIII	chr6:52938178-52938455(+)$1	277	84	89	11.1445
EKKBB	chr17:26918680-26918911(-)$1	231	14	19	11.3253
dddll	chr7:120737663-120737920(+)$1	257	219	224	11.1445
22bbf	chr9:114159305-114159532(-)$1	227	147	152	11.3253
DDDD{	chrX:153176501-153176742(-)$1	241	61	66	11.1445
dddmm	chr7:86811439-86811700(+)$1	261	79	84	11.1445
ffffd	chr20:34300907-34301120(-)$1	213	170	175	11.1445
fammm	chr12:51100271-51100540(+)$1	269	115	120	11.1445
cpppp	chr14:70237681-70237922(+)$1	241	13	18	11.1445
f::cc	chr10:69773732-69774042(-)$1	310	168	173	11.3855
ddd22	chr12:6637743-6637969(+)$1	226	25	30	11.1445
ccc[d	chr16:22336984-22337221(+)$1	237	15	20	11.3253
ddd]d	chr20:33954259-33954506(-)$1	247	196	201	11.1445
bbeee	chr1:39776442-39776704(+)$1	262	254	259	11.3855
oobb]	chr12:112513381-112513636(-)$1	255	101	106	11.1445
llccc	chr19:1422245-1422501(+)$1	256	31	36	11.1445
a[ccc	chr6:29588915-29589170(-)$1	255	158	163	11.1445
=====	chr9:95049979-95050217(-)$1	238	133	138	11.1445
bb[bb	chr7:931907-932156(+)$1	249	106	111	11.3253
[bbmm	chr19:7703526-7703757(+)$1	231	14	19	11.1445
hhhhh	chr3:176769338-176769619(-)$1	281	228	233	11.3253
qqqqq	chr17:40865222-40865508(-)$1	286	212	217	11.1445
DDDD{	chr12:31242234-31242580(+)$1	346	59	64	11.3855
KDDDD	chr19:2040033-2040260(-)$1	227	45	50	11.3253
HHHHH	chr19:52709115-52709370(+)$1	255	47	52	11.3855
ffff:	chr15:72557321-72557556(-)$1	235	97	102	11.3253
#addd	chr9:95032145-95032365(-)$1	220	12	17	11.1445
D{BB{	chr11:118963004-118963248(+)$1	244	17	22	11.3855
bb###	chr6:31619949-31620209(-)$1	260	115	120	11.1445
===%%	chr5:94859392-94859630(-)$1	238	92	97	11.3253
####e	chr4:1953734-1953990(+)$1	256	70	75	11.3253
ccc[f	chr17:79479465-79479700(-)$1	235	0	5	11.3855
dddd[	chr19:46116698-46116928(-)$1	230	37	42	11.1445
DDDDO	chr3:9489327-9489592(+)$1	265	48	53	11.3253
[ccc"	chr6:31930437-31930674(+)$1	237	59	64	11.1445
d[bb[	chr3:184039764-184039983(+)$1	219	27	32	11.1445
e!!am	chrX:48664956-48665213(+)$1	257	12	17	11.1445
EEEEK	chr22:22313858-22314070(-)$1	212	8	13	11.1445
:::cc	chr17:34866968-34867399(-)$1	431	1	6	11.3253
EEEcc	chr17:7127431-7127650(+)$1	219	11	16	11.3855
IIIII	chr19:49119087-49119303(-)$1	216	1	6	11.1445
ee:::	chr6:30883101-30883331(+)$1	230	77	82	11.3253
::FFF	chr1:150297384-150297646(+)$1	262	36	41	11.3855
DDDD:	chr17:76198478-76198727(+)$1	249	70	75	11.1445
llggg	chr12:9096317-9096599(-)$1	282	106	111	11.1445
GGGGG	chr3:9984433-9984679(+)$1	246	101	106	11.1445
"cccm	chr17:5436041-5436281(-)$1	240	157	162	11.3855
dddd5	chr11:66133305-66133573(-)$1	268	59	64	11.3253
cc]cc	chr19:1009917-1010226(-)$1	309	90	95	11.3855
]bb66	chr7:127964631-127964845(-)$1	214	98	103	11.3855
dd[dd	chr7:151918999-151919251(-)$1	252	115	120	11.1445
cc]cc	chr12:48189040-48189271(-)$1	231	19	24	11.3253
DDD{A	chr19:34859441-34859691(+)$1	250	57	62	11.3253
22ccc	chr11:3033381-3033607(-)$1	226	196	201	11.3855
HH{CC	chr5:151179678-151179913(+)$1	235	108	113	11.3855
{CCC{	chr1:226066960-226067190(-)$1	230	2	7	11.3855
ddd22	chr2:86343584-86343822(+)$1	238	21	26	11.1445
mmccc	chr11:77669689-77669908(-)$1	219	70	75	11.3253
$eeee	chr5:151166084-151166384(+)$1	300	123	128	11.3855
gg:FF	chr6:56963782-56964035(+)$1	253	241	246	11.1445
EEEE{	chr7:120591117-120591390(+)$1	273	1	6	11.3253
hhhhh	chr1:153918932-153919217(-)$1	285	9	14	11.3855
ellle	chr5:878362-878658(-)$1	296	138	143	11.3253
[bb!!	chr2:232576573-232576794(+)$1	221	50	55	11.1445
dddd:	chr5:179045045-179045277(-)$1	232	59	64	11.3855
fffff	chr11:62652933-62653180(+)$1	247	62	67	11.1445

#DB
(((((	chr13:114786780-114787028(-)$1	1	1	6	11.3253
.(((.	chr15:75654140-75654389(-)$1	1	64	69	11.1445
.((((	chr21:45744274-45744524(+)$1	1	100	105	11.1445
)))))	chr12:31250779-31251031(+)$1	1	83	88	11.1445
(((((	chr19:40748433-40748696(-)$1	1	13	18	11.3855
(((..	chr19:19135401-19135704(-)$1	1	48	53	11.1445
..(((	chr1:32843715-32843949(-)$1	1	1	6	11.3855
(((((	chr5:137501417-137501643(-)$1	1	37	42	11.1445
((.((	chr21:45736270-45736506(+)$1	1	6	11	11.3855
.))))	chr1:8568599-8568835(-)$1	1	104	109	11.1445
.))).	chr19:7707775-7708014(+)$1	1	149	154	11.1445
.....	chr3:9729436-9729675(+)$1	1	21	26	11.3253
(..((	chr7:1477473-1477709(-)$1	1	37	42	11.3855
.((((	chr12:53858446-53858666(+)$1	1	37	42	11.3855
)))).	chr15:42867759-42868049(+)$1	1	66	71	11.3855
(((.(	chr1:180601132-180601484(+)$1	1	54	59	11.3253
((((.	chr9:139906286-139906572(-)$1	1	102	107	11.3253
(((((	chr6:52938178-52938455(+)$1	1	84	89	11.1445
(..((	chr17:26918680-26918911(-)$1	1	14	19	11.3253
(((..	chr7:120737663-120737920(+)$1	1	219	224	11.1445
..)))	chr9:114159305-114159532(-)$1	1	147	152	11.3253
((((.	chrX:153176501-153176742(-)$1	1	61	66	11.1445
(((..	chr7:86811439-86811700(+)$1	1	79	84	11.1445
)))))	chr20:34300907-34301120(-)$1	1	170	175	11.1445
((...	chr12:51100271-51100540(+)$1	1	115	120	11.1445
(....	chr14:70237681-70237922(+)$1	1	13	18	11.1445
)..((	chr10:69773732-69774042(-)$1	1	168	173	11.3855
)))..	chr12:6637743-6637969(+)$1	1	25	30	11.1445
(((.(	chr16:22336984-22337221(+)$1	1	15	20	11.3253
))).)	chr20:33954259-33954506(-)$1	1	196	201	11.1445
)))))	chr1:39776442-39776704(+)$1	1	254	259	11.3855
..)).	chr12:112513381-112513636(-)$1	1	101	106	11.1445
..)))	chr19:1422245-1422501(+)$1	1	31	36	11.1445
(.(((	chr6:29588915-29589170(-)$1	1	158	163	11.1445
(((((	chr9:95049979-95050217(-)$1	1	133	138	11.1445
((.((	chr7:931907-932156(+)$1	1	106	111	11.3253
.((..	chr19:7703526-7703757(+)$1	1	14	19	11.1445
(((((	chr3:176769338-176769619(-)$1	1	228	233	11.3253
.....	chr17:40865222-40865508(-)$1	1	212	217	11.1445
((((.	chr12:31242234-31242580(+)$1	1	59	64	11.3855
.((((	chr19:2040033-2040260(-)$1	1	45	50	11.3253
(((((	chr19:52709115-52709370(+)$1	1	47	52	11.3855
)))).	chr15:72557321-72557556(-)$1	1	97	102	11.3253
.((((	chr9:95032145-95032365(-)$1	1	12	17	11.1445
(.((.	chr11:118963004-118963248(+)$1	1	17	22	11.3855
((...	chr6:31619949-31620209(-)$1	1	115	120	11.1445
(((..	chr5:94859392-94859630(-)$1	1	92	97	11.3253
....(	chr4:1953734-1953990(+)$1	1	70	75	11.3253
(((.(	chr17:79479465-79479700(-)$1	1	0	5	11.3855
((((.	chr19:46116698-46116928(-)$1	1	37	42	11.1445
((((.	chr3:9489327-9489592(+)$1	1	48	53	11.3253
.(((.	chr6:31930437-31930674(+)$1	1	59	64	11.1445
(.((.	chr3:184039764-184039983(+)$1	1	27	32	11.1445
(..(.	chrX:48664956-48665213(+)$1	1	12	17	11.1445
((((.	chr22:22313858-22314070(-)$1	1	8	13	11.1445
...((	chr17:34866968-34867399(-)$1	1	1	6	11.3253
(((((	chr17:7127431-7127650(+)$1	1	11	16	11.3855
(((((	chr19:49119087-49119303(-)$1	1	1	6	11.1445
))...	chr6:30883101-30883331(+)$1	1	77	82	11.3253
..(((	chr1:150297384-150297646(+)$1	1	36	41	11.3855
)))).	chr17:76198478-76198727(+)$1	1	70	75	11.1445
..)))	chr12:9096317-9096599(-)$1	1	106	111	11.1445
(((((	chr3:9984433-9984679(+)$1	1	101	106	11.1445
.(((.	chr17:5436041-5436281(-)$1	1	157	162	11.3855
)))).	chr11:66133305-66133573(-)$1	1	59	64	11.3253
)).))	chr19:1009917-1010226(-)$1	1	90	95	11.3855
.))..	chr7:127964631-127964845(-)$1	1	98	103	11.3855
((.((	chr7:151918999-151919251(-)$1	1	115	120	11.1445
)).))	chr12:48189040-48189271(-)$1	1	19	24	11.3253
(((.(	chr19:34859441-34859691(+)$1	1	57	62	11.3253
..)))	chr11:3033381-3033607(-)$1	1	196	201	11.3855
((.((	chr5:151179678-151179913(+)$1	1	108	113	11.3855
.(((.	chr1:226066960-226067190(-)$1	1	2	7	11.3855
)))..	chr2:86343584-86343822(+)$1	1	21	26	11.1445
..)))	chr11:77669689-77669908(-)$1	1	70	75	11.3253
.((((	chr5:151166084-151166384(+)$1	1	123	128	11.3855
)).))	chr6:56963782-56964035(+)$1	1	241	246	11.1445
((((.	chr7:120591117-120591390(+)$1	1	1	6	11.3253
(((((	chr1:153918932-153919217(-)$1	1	9	14	11.3855
(...)	chr5:878362-878658(-)$1	1	138	143	11.3253
.((..	chr2:232576573-232576794(+)$1	1	50	55	11.1445
)))).	chr5:179045045-179045277(-)$1	1	59	64	11.3855
(((((	chr11:62652933-62653180(+)$1	1	62	67	11.1445

#PSSM
G : 0.95	g : 0.04	
C : 0.95	c : 0.04	
U : 0.96	u : 0.03	
G : 0.97	g : 0.02	
C : 0.26	G : 0.26	A : 0.22	U : 0.21	g : 0.01	u : 0.01	

#score	934.5180722891592
#seq	83
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_UTR_m1_run1.nuc.txt

#NT
CGCGGGGAGGGGGAGGAGGGG	chr5:139028099-139028346(+)$1	247	106	127	24.7272
AGCGUGCGCGGGCCGGGGGCU	chr19:40790659-40790899(-)$1	240	72	93	18.7272
GGAGUGGGGAGGGCUGGGGUG	chr4:763952-764212(-)$1	260	106	127	20.0909
gggggggggggggcagguggg	chr17:7141457-7141707(-)$1	250	90	111	24.1818
ggCCUGAGGGGGGCGGAAGGG	chr19:50016274-50016545(+)$1	271	111	132	18.8181
ggcgugcgggaggcgcggccu	chr12:31476970-31477276(-)$1	306	125	146	17.8181
cggggcugcgaggaggggggg	chr8:145691335-145691567(+)$1	232	32	53	17.2727
ugcggggugggggcggggccu	chr19:47778065-47778382(+)$1	317	37	58	23.8181
CGGAGGAGGAGGGCGGGGAAG	chr7:77166499-77166765(+)$1	266	59	80	17.9090
CGGGAGGGGCGGCCGGGGGCG	chr15:75747233-75747518(-)$1	285	116	137	20.4545
CCCGCGGGCGGGGAGGGGGAG	chr11:64073598-64073856(+)$1	258	109	130	20.5454
UCCGGGGCGGGGGUGGGGGGU	chr19:56598901-56599149(-)$1	248	99	120	20.5454
cgggggcagggggcgggcgca	chr17:76778202-76778475(-)$1	273	10	31	21.6363
CGAGGGGCGGGGGGAGGGGCG	chr15:74726317-74726562(-)$1	245	178	199	25.0000
agcggagggggagcggaggag	chr11:18034158-18034438(-)$1	280	80	101	19.0909
GCAGGGUGGGGGGCAAGGGAG	chr4:2066949-2067204(+)$1	255	54	75	20.4545
GGCGGGAGGGGGGCAGGGAGG	chrX:133930945-133931255(-)$1	310	219	240	26.2727
GGCGGCAUGGGGGAGGCGGCG	chr19:41858836-41859087(+)$1	251	105	126	22.6363
cgcgggccgggggcggggccg	chr12:50479341-50479638(+)$1	297	12	33	28.0000
cgcggggccggggcgaggagg	chr1:150946760-150946974(-)$1	214	2	23	19.1818
CGAGGGCCGAGGGGGGCGGCG	chr14:69261133-69261409(-)$1	276	128	149	20.5454
cgcggguggggggcgggGGCG	chr20:62526566-62526797(+)$1	231	176	197	33.6363
CGCGAGCGGGAGGCGGCGGCG	chr11:842830-843109(+)$1	279	61	82	24.9090
gcgggguggcgggcgggggcu	chr2:95825079-95825385(-)$1	306	12	33	22.0909
ggcgagguggcggcggcggcg	chr9:126030568-126030856(-)$1	288	77	98	23.2727
GGGGCGAUGGGGGUGGGCGCG	chr19:616506-616771(-)$1	265	79	100	20.5454
GCCCGGGGGAGGGGGGUGGCG	chr3:184080334-184080552(+)$1	218	183	204	18.5454
CGCGGGCGGGGGGCACGGGAG	chr16:69166301-69166561(-)$1	260	182	203	25.0909
AGCGGGGUGGGAGGAGUGGCG	chr8:101964338-101964601(-)$1	263	101	122	18.3636
GCAGUGGCGGGGGCGGCGGCG	chr19:41859446-41859702(+)$1	256	152	173	21.7272
ggcgggcgagcgggcggggcg	chr5:138089177-138089520(+)$1	343	119	140	21.8181
GGAGGGCcggagguggcggcg	chr21:38445484-38445716(+)$1	232	98	119	21.9090
GAUGUGUGGGGGGCAGGGGGC	chr19:39669945-39670173(+)$1	228	110	131	17.5454
UGUGGGUGUGGGGUCGGGGCU	chr2:241569152-241569399(+)$1	247	90	111	17.0909
GGAGGGCGGGGGGAGGUGGCU	chr14:32546428-32546681(+)$1	253	31	52	24.0909
GGCCAGCUGGGGGCAGGGACG	chr19:41829542-41829794(-)$1	252	116	137	19.3636
cgcggguccggcgcgggcgcg	chr11:3013191-3013466(-)$1	275	57	78	19.7272
GGAGGGCGGGCGGCCCGGGCU	chr8:144679299-144679567(-)$1	268	109	130	18.9090
GCCGGGAGGGGGGAGGAGAGG	chr11:120894730-120895018(+)$1	288	199	220	20.6363
cggccgugggaggcgggggcc	chr2:240322084-240322401(-)$1	317	140	161	18.2727
ggcgccggggaggcgggggga	chr18:72920999-72921259(-)$1	260	59	80	19.4545
CACGUGACGGGGGCGGGGCGG	chr19:49843449-49843699(-)$1	250	73	94	19.8181
AGCUGGAUGGGGGCUGUGGGG	chr17:77909044-77909360(-)$1	316	105	126	18.0000
cgcggugagggagcgggggug	chr17:36955577-36955817(-)$1	240	30	51	20.5454
ggcggguucuggggcggggcg	chr1:15850804-15851070(-)$1	266	67	88	19.3636
GUUGGGGAGGGGGAGGGGGAG	chr20:57467238-57467490(+)$1	252	32	53	22.1818
GUCGAGCUGGGGCUGGGGGCG	chr1:33219493-33219748(+)$1	255	67	88	19.1818
CGCAGGCGGGCGGAGGGGGAG	chrX:41193692-41193951(+)$1	259	103	124	22.4545
GGUGGGUGUGAGGCGGGAGCU	chr7:66205574-66205837(+)$1	263	111	132	17.7272
UUCGGGCGGUGGGAGGGGGAG	chr9:139743343-139743664(+)$1	321	89	110	20.9090
guggggugggugggagggggg	chr7:27153270-27153497(-)$1	227	2	23	18.7272
cgccgguggggaggggagggg	chr8:143484044-143484312(-)$1	268	4	25	19.0000
ggagggagggaggCGAGCGCG	chr17:934805-935103(-)$1	298	2	23	21.0909
GGAGGGAGCGAGGCCGGGGAG	chr17:74380638-74380899(+)$1	261	107	128	20.8181

#otherMatches

#Struct PSSM
pppppbb]eeeee]bbfffff	chr2:191513918-191514143(+)$1	225	36	57	17.5454
:============[dddd!!d	chr5:139028099-139028346(+)$1	247	106	127	24.7272
ggggg]a]acccddddllldd	chr19:40790659-40790899(-)$1	240	72	93	18.7272
mmmmdddd::::HHHHHHHH}	chr4:763952-764212(-)$1	260	106	127	20.0909
EEEE{CCC:a[cccqqqqqqq	chr17:7141457-7141707(-)$1	250	90	111	24.1818
"ddddnnnnndddd666666c	chr19:50016274-50016545(+)$1	271	111	132	18.8181
ddd55555ggggggg]=====	chr12:31476970-31477276(-)$1	306	125	146	17.8181
nneeeee]bb7777777a]ee	chr8:145691335-145691567(+)$1	232	32	53	17.2727
MA{HHHHHHHH{BBFFFFFF{	chr19:47778065-47778382(+)$1	317	37	58	23.8181
ddd&&&&&&&ggggggg++++	chr7:77166499-77166765(+)$1	266	59	80	17.9090
hhhh"""ffffff[ccc[eee	chr15:75747233-75747518(-)$1	285	116	137	20.4545
6666dddd]bb22bbffffff	chr11:64073598-64073856(+)$1	258	109	130	20.5454
ff:EEEEEKKJJJJJJJJJJJ	chr19:56598901-56599149(-)$1	248	99	120	20.5454
clllccc22eeeee:::IIII	chr17:76778202-76778475(-)$1	273	10	31	21.6363
e22ddddIIIIIIIII}CCC=	chr15:74726317-74726562(-)$1	245	178	199	25.0000
22dddd::DDDD{DDDD{A::	chr11:18034158-18034438(-)$1	280	80	101	19.0909
]eeeeehhhhhhhhdddd!!d	chr4:2066949-2067204(+)$1	255	54	75	20.4545
ffffff22eeeee::dddd[b	chrX:133930945-133931255(-)$1	310	219	240	26.2727
B}DDDD}BB}DDDDeeeee[c	chr19:41858836-41859087(+)$1	251	105	126	22.6363
D{A{DDDDMMMMEEEEE:fff	chr12:50479341-50479638(+)$1	297	12	33	28.0000
HHHHHHDDDD{DDDDLLLCCC	chr1:150946760-150946974(-)$1	214	2	23	19.1818
####dddd[ccc[ccc!!ddd	chr14:69261133-69261409(-)$1	276	128	149	20.5454
EEE}A}DDDD}EEEEE}CCC}	chr20:62526566-62526797(+)$1	231	176	197	33.6363
ccc!!bbnnnnnbb]ccc]cc	chr11:842830-843109(+)$1	279	61	82	24.9090
FFFFFF{DDDDKKFFFFFFKK	chr2:95825079-95825385(-)$1	306	12	33	22.0909
occc:dddd[a[bb!!a[bbl	chr9:126030568-126030856(-)$1	288	77	98	23.2727
=====:::IIIIIIIII{BB:	chr19:616506-616771(-)$1	265	79	100	20.5454
occc333bb333bb]bb]ccc	chr3:184080334-184080552(+)$1	218	183	204	18.5454
eeffffff]bb]bb]bb]a]d	chr16:69166301-69166561(-)$1	260	182	203	25.0909
ee]==========ffffff[c	chr8:101964338-101964601(-)$1	263	101	122	18.3636
a]bb]ffffffbb]bb]dddd	chr19:41859446-41859702(+)$1	256	152	173	21.7272
DBBIIIIIIIII::ffffff[	chr5:138089177-138089520(+)$1	343	119	140	21.8181
]bb]ccc]eeeee]ccc====	chr21:38445484-38445716(+)$1	232	98	119	21.9090
ccc666666==========hh	chr19:39669945-39670173(+)$1	228	110	131	17.5454
:::==========!!ddddmm	chr2:241569152-241569399(+)$1	247	90	111	17.0909
$$$bb[bbqqqqqqqqbb]bb	chr14:32546428-32546681(+)$1	253	31	52	24.0909
]ccc22eeeee::cccnnnnn	chr19:41829542-41829794(-)$1	252	116	137	19.3636
ddd22ffffff::eeeee[a[	chr11:3013191-3013466(-)$1	275	57	78	19.7272
5555ffffff]ddddcccccc	chr8:144679299-144679567(-)$1	268	109	130	18.9090
[hhhhhhhh[ccc[dddd!!c	chr11:120894730-120895018(+)$1	288	199	220	20.6363
ffff[eeeee[bb[dddd[dd	chr2:240322084-240322401(-)$1	317	140	161	18.2727
f]a]eeeee22ccc22eeeee	chr18:72920999-72921259(-)$1	260	59	80	19.4545
c:ggggggg####ccc&&&&&	chr19:49843449-49843699(-)$1	250	73	94	19.8181
7eeeee:FFFFFFbb[a[fff	chr17:77909044-77909360(-)$1	316	105	126	18.0000
EE===========[hhhhhhh	chr17:36955577-36955817(-)$1	240	30	51	20.5454
33bbIIIIIIIII{CCC:ccc	chr1:15850804-15851070(-)$1	266	67	88	19.3636
ee:::::::::::::::gggg	chr20:57467238-57467490(+)$1	252	32	53	22.1818
dddccc22eeeee]bbggggg	chr1:33219493-33219748(+)$1	255	67	88	19.1818
cmmmmccc]ccc]a]a]eeee	chrX:41193692-41193951(+)$1	259	103	124	22.4545
ff22hhhhhhhhddddppppp	chr7:66205574-66205837(+)$1	263	111	132	17.7272
EMMMMDDDD{BBKKDDDD{BB	chr9:139743343-139743664(+)$1	321	89	110	20.9090
JJJJJJJJJJJbb[ccc[ddd	chr7:27153270-27153497(-)$1	227	2	23	18.7272
EEEEFFFFFF{CCC{AKKFFF	chr8:143484044-143484312(-)$1	268	4	25	19.0000
CC{DDDDDDDD{CCC{DDDDE	chr17:934805-935103(-)$1	298	2	23	21.0909
ff22a22ccc]bb]ggggggg	chr17:74380638-74380899(+)$1	261	107	128	20.8181

#DB
.....)).))))).)))))))	chr2:191513918-191514143(+)$1	1	36	57	17.5454
.((((((((((((.((((..(	chr5:139028099-139028346(+)$1	1	106	127	24.7272
))))).).)(((((((...))	chr19:40790659-40790899(-)$1	1	72	93	18.7272
....))))....)))))))).	chr4:763952-764212(-)$1	1	106	127	20.0909
((((.(((.(.(((.......	chr17:7141457-7141707(-)$1	1	90	111	24.1818
.((((.....))))......)	chr19:50016274-50016545(+)$1	1	111	132	18.8181
))).....))))))).)))))	chr12:31476970-31477276(-)$1	1	125	146	17.8181
..))))).)).......).))	chr8:145691335-145691567(+)$1	1	32	53	17.2727
.(.((((((((.((((((((.	chr19:47778065-47778382(+)$1	1	37	58	23.8181
(((.......(((((((....	chr7:77166499-77166765(+)$1	1	59	80	17.9090
((((...((((((.(((.(((	chr15:75747233-75747518(-)$1	1	116	137	20.4545
....)))).))..))))))))	chr11:64073598-64073856(+)$1	1	109	130	20.5454
)).(((((..(((((((((((	chr19:56598901-56599149(-)$1	1	99	120	20.5454
(...)))..)))))...((((	chr17:76778202-76778475(-)$1	1	10	31	21.6363
)..))))))))))))).)))(	chr15:74726317-74726562(-)$1	1	178	199	25.0000
..))))..((((.((((.(..	chr11:18034158-18034438(-)$1	1	80	101	19.0909
.)))))))))))))((((..(	chr4:2066949-2067204(+)$1	1	54	75	20.4545
))))))..)))))..((((.(	chrX:133930945-133931255(-)$1	1	219	240	26.2727
).)))).)).))))(((((.(	chr19:41858836-41859087(+)$1	1	105	126	22.6363
(.(.((((....(((((.(((	chr12:50479341-50479638(+)$1	1	12	33	28.0000
((((((((((.((((...(((	chr1:150946760-150946974(-)$1	1	2	23	19.1818
....((((.(((.(((..(((	chr14:69261133-69261409(-)$1	1	128	149	20.5454
))).).)))).))))).))).	chr20:62526566-62526797(+)$1	1	176	197	33.6363
(((..((.....)).))).))	chr11:842830-843109(+)$1	1	61	82	24.9090
((((((.((((..((((((..	chr2:95825079-95825385(-)$1	1	12	33	22.0909
.))).((((.(.((..(.((.	chr9:126030568-126030856(-)$1	1	77	98	23.2727
)))))...(((((((((.((.	chr19:616506-616771(-)$1	1	79	100	20.5454
.)))...))...)).)).)))	chr3:184080334-184080552(+)$1	1	183	204	18.5454
)))))))).)).)).)).).)	chr16:69166301-69166561(-)$1	1	182	203	25.0909
)).))))))))))((((((.(	chr8:101964338-101964601(-)$1	1	101	122	18.3636
).)).)))))))).)).))))	chr19:41859446-41859702(+)$1	1	152	173	21.7272
))))))))))))..((((((.	chr5:138089177-138089520(+)$1	1	119	140	21.8181
.)).))).))))).)))((((	chr21:38445484-38445716(+)$1	1	98	119	21.9090
)))......))))))))))((	chr19:39669945-39670173(+)$1	1	110	131	17.5454
...((((((((((..((((..	chr2:241569152-241569399(+)$1	1	90	111	17.0909
...((.((........)).))	chr14:32546428-32546681(+)$1	1	31	52	24.0909
.)))..)))))..(((.....	chr19:41829542-41829794(-)$1	1	116	137	19.3636
)))..))))))..(((((.(.	chr11:3013191-3013466(-)$1	1	57	78	19.7272
....)))))).))))))))))	chr8:144679299-144679567(-)$1	1	109	130	18.9090
.((((((((.(((.((((..(	chr11:120894730-120895018(+)$1	1	199	220	20.6363
((((.(((((.((.((((.((	chr2:240322084-240322401(-)$1	1	140	161	18.2727
).).)))))..)))..)))))	chr18:72920999-72921259(-)$1	1	59	80	19.4545
).(((((((....(((.....	chr19:49843449-49843699(-)$1	1	73	94	19.8181
.))))).((((((((.(.(((	chr17:77909044-77909360(-)$1	1	105	126	18.0000
(((((((((((((.(((((((	chr17:36955577-36955817(-)$1	1	30	51	20.5454
..))(((((((((.(((.(((	chr1:15850804-15851070(-)$1	1	67	88	19.3636
))...............((((	chr20:57467238-57467490(+)$1	1	32	53	22.1818
))))))..))))).))(((((	chr1:33219493-33219748(+)$1	1	67	88	19.1818
(....))).))).).).))))	chrX:41193692-41193951(+)$1	1	103	124	22.4545
))..))))))))((((.....	chr7:66205574-66205837(+)$1	1	111	132	17.7272
(....((((.((..((((.((	chr9:139743343-139743664(+)$1	1	89	110	20.9090
(((((((((((((.(((.(((	chr7:27153270-27153497(-)$1	1	2	23	18.7272
((((((((((.(((.(..(((	chr8:143484044-143484312(-)$1	1	4	25	19.0000
((.((((((((.(((.(((((	chr17:934805-935103(-)$1	1	2	23	21.0909
))..)..))).)).)))))))	chr17:74380638-74380899(+)$1	1	107	128	20.8181

#PSSM
G : 0.30	C : 0.20	g : 0.18	c : 0.16	A : 0.05	U : 0.05	u : 0.01	a : 0.01	
G : 0.40	g : 0.34	C : 0.12	U : 0.05	A : 0.03	c : 0.01	u : 0.01	
C : 0.34	c : 0.23	A : 0.16	g : 0.10	U : 0.07	G : 0.05	a : 0.01	
G : 0.50	g : 0.32	C : 0.05	U : 0.03	A : 0.03	c : 0.03	
G : 0.40	g : 0.29	U : 0.10	A : 0.07	C : 0.05	c : 0.03	u : 0.01	a : 0.01	
G : 0.61	g : 0.29	c : 0.03	a : 0.01	C : 0.01	u : 0.01	
C : 0.20	A : 0.18	G : 0.18	u : 0.14	g : 0.12	c : 0.07	U : 0.07	a : 0.01	
G : 0.36	g : 0.21	U : 0.12	C : 0.09	c : 0.07	u : 0.05	A : 0.03	a : 0.03	
G : 0.52	g : 0.29	c : 0.07	C : 0.05	U : 0.03	a : 0.01	
G : 0.50	g : 0.34	A : 0.07	C : 0.01	c : 0.01	u : 0.01	U : 0.01	
G : 0.52	g : 0.21	a : 0.10	A : 0.05	c : 0.03	C : 0.03	u : 0.01	
G : 0.58	g : 0.30	a : 0.05	A : 0.03	c : 0.01	
G : 0.56	g : 0.38	C : 0.05	
C : 0.34	c : 0.25	A : 0.14	U : 0.07	G : 0.07	g : 0.07	a : 0.01	u : 0.01	
G : 0.41	g : 0.29	A : 0.12	C : 0.05	U : 0.03	a : 0.03	c : 0.03	
G : 0.56	g : 0.32	A : 0.03	C : 0.03	c : 0.01	a : 0.01	
G : 0.43	g : 0.29	C : 0.07	U : 0.07	A : 0.05	a : 0.03	c : 0.03	
G : 0.58	g : 0.29	A : 0.03	c : 0.03	C : 0.03	u : 0.01	
G : 0.56	g : 0.27	A : 0.07	c : 0.05	a : 0.01	C : 0.01	
C : 0.34	c : 0.20	G : 0.14	A : 0.14	g : 0.10	U : 0.01	a : 0.01	u : 0.01	
G : 0.52	g : 0.23	U : 0.10	u : 0.05	a : 0.03	C : 0.01	c : 0.01	

#score	1152.0909090909097
#seq	55
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_transcript_m3_run2.nuc.txt

#NT
gggc	chr5:109035336-109035590(-)$1	254	63	67	11.9999
GGGC	chr7:933002-933287(+)$1	285	2	6	11.9999
GGGC	chr6:31802939-31803160(+)$1	221	50	54	11.9999
GGGC	chr16:1424633-1424862(-)$1	229	218	222	11.9999
GGGC	chr12:124917570-124917880(-)$1	310	7	11	11.9999
gggc	chr8:650456-650688(-)$1	232	125	129	11.9999
GGGC	chr7:5569554-5569805(-)$1	251	21	25	11.9999
GGGC	chr15:66795117-66795350(-)$1	233	73	77	11.9999
GGGC	chr11:93454734-93454987(+)$1	253	84	88	11.9999
GGGC	chr11:93454679-93454890(+)$1	211	139	143	11.9999
GGGC	chr19:575249-575520(+)$1	271	10	14	11.9999
gggc	chr11:123172129-123172333(+)$1	204	8	12	11.9999
gggc	chr14:90178795-90179098(+)$1	303	67	71	11.9999
GGGC	chr14:105625520-105625776(-)$1	256	9	13	11.9999
GGGC	chr3:13418961-13419228(-)$1	267	11	15	11.9999
GGGC	chr1:173836735-173836980(-)$1	245	203	207	11.9999
GGGC	chr19:10218241-10218500(+)$1	259	167	171	11.9999
GGGC	chr16:30107137-30107408(-)$1	271	9	13	11.9999
gggc	chr7:48672248-48672502(+)$1	254	51	55	11.9999
gggc	chr16:88580954-88581294(+)$1	340	18	22	11.9999
gggc	chr8:11667941-11668234(+)$1	293	12	16	11.9999
GGGC	chr19:41883359-41883615(+)$1	256	12	16	11.9999
GGGC	chr16:620987-621281(+)$1	294	5	9	11.9999
GGGC	chr19:49605901-49606140(+)$1	239	21	25	11.9999
Gggc	chr13:21436189-21436476(-)$1	287	250	254	11.9999
GGGC	chr11:47377097-47377354(-)$1	257	128	132	11.9999
GGGC	chr13:113207309-113207618(-)$1	309	82	86	11.9999
GGGC	chr6:31804756-31804974(+)$1	218	195	199	11.9999
GGGC	chr16:48418955-48419243(-)$1	288	136	140	11.9999
GGGC	chr22:39711180-39711410(-)$1	230	20	24	11.9999
GGGC	chr12:6619499-6619713(+)$1	214	8	12	11.9999
GGGC	chr3:160232787-160232994(-)$1	207	126	130	11.9999
GGGC	chr17:73774724-73774970(-)$1	246	107	111	11.9999
GGGC	chr19:41271066-41271310(+)$1	244	44	48	11.9999
GGGC	chr16:1424490-1424777(-)$1	287	133	137	11.9999
GGGC	chr1:182360379-182360641(-)$1	262	28	32	11.9999
GGGC	chr5:137685007-137685289(+)$1	282	28	32	11.9999
GGGC	chr6:31937067-31937359(+)$1	292	5	9	11.9999
GGGC	chrX:154003010-154003284(+)$1	274	169	173	11.9999
GGGC	chr19:49606819-49607070(+)$1	251	73	77	11.9999
GGGC	chr16:88961785-88962032(-)$1	247	34	38	11.9999
GGGC	chr19:2270021-2270300(+)$1	279	13	17	11.9999
GGGC	chr2:216300345-216300618(-)$1	273	67	71	11.9999
GGGC	chr3:184043391-184043625(+)$1	234	10	14	11.9999
GGGC	chr16:89042863-89043146(-)$1	283	71	75	11.9999
GGGC	chr14:94849370-94849659(-)$1	289	51	55	11.9999
GGGC	chr12:7076408-7076644(-)$1	236	103	107	11.9999
GGGC	chr1:109642835-109643053(+)$1	218	193	197	11.9999
GGGC	chr20:17943371-17943603(-)$1	232	0	4	11.9999
GGGC	chr1:988504-988747(+)$1	243	189	193	11.9999
gggc	chr12:133356648-133356874(-)$1	226	112	116	11.9999
GGGC	chr14:105632369-105632619(-)$1	250	25	29	11.9999
GGGC	chr11:93454887-93455092(+)$1	205	75	79	11.9999
GGGC	chr19:11664172-11664514(-)$1	342	53	57	11.9999
GGGC	chr2:234197395-234197627(+)$1	232	29	33	11.9999
GGGC	chr2:97559941-97560164(-)$1	223	129	133	11.9999
GGGC	chr1:226066403-226066713(-)$1	310	57	61	11.9999
GGGC	chr11:111730982-111731365(-)$1	383	6	10	11.9999
GGGC	chr14:19889638-19889906(-)$1	268	38	42	11.9999
GGGC	chr17:7480094-7480310(+)$1	216	114	118	11.9999
GGGC	chr7:6677615-6677870(+)$1	255	64	68	11.9999
GGGC	chr3:160232738-160232945(-)$1	207	77	81	11.9999
GGGC	chr16:88960960-88961200(-)$1	240	6	10	11.9999
GGGC	chr17:27050391-27050608(+)$1	217	55	59	11.9999

#otherMatches

#Struct PSSM
]bbd	chr19:941749-942007(+)$1	258	132	136	11.9999
:ggg	chr5:109035336-109035590(-)$1	254	63	67	11.9999
c[bb	chr7:933002-933287(+)$1	285	2	6	11.9999
gbb:	chr6:31802939-31803160(+)$1	221	50	54	11.9999
HHHH	chr16:1424633-1424862(-)$1	229	218	222	11.9999
[eee	chr12:124917570-124917880(-)$1	310	7	11	11.9999
====	chr8:650456-650688(-)$1	232	125	129	11.9999
JJJJ	chr7:5569554-5569805(-)$1	251	21	25	11.9999
i777	chr15:66795117-66795350(-)$1	233	73	77	11.9999
a[ff	chr11:93454734-93454987(+)$1	253	84	88	11.9999
a[ff	chr11:93454679-93454890(+)$1	211	139	143	11.9999
cppp	chr19:575249-575520(+)$1	271	10	14	11.9999
JJJG	chr11:123172129-123172333(+)$1	204	8	12	11.9999
ggg[	chr14:90178795-90179098(+)$1	303	67	71	11.9999
EEEE	chr14:105625520-105625776(-)$1	256	9	13	11.9999
NNNA	chr3:13418961-13419228(-)$1	267	11	15	11.9999
EEEE	chr1:173836735-173836980(-)$1	245	203	207	11.9999
BBcc	chr19:10218241-10218500(+)$1	259	167	171	11.9999
eee!	chr16:30107137-30107408(-)$1	271	9	13	11.9999
iiii	chr7:48672248-48672502(+)$1	254	51	55	11.9999
dddd	chr16:88580954-88581294(+)$1	340	18	22	11.9999
gggg	chr8:11667941-11668234(+)$1	293	12	16	11.9999
::cc	chr19:41883359-41883615(+)$1	256	12	16	11.9999
EEEE	chr16:620987-621281(+)$1	294	5	9	11.9999
gggg	chr19:49605901-49606140(+)$1	239	21	25	11.9999
::ff	chr13:21436189-21436476(-)$1	287	250	254	11.9999
ddd!	chr11:47377097-47377354(-)$1	257	128	132	11.9999
[a[c	chr13:113207309-113207618(-)$1	309	82	86	11.9999
:ddd	chr6:31804756-31804974(+)$1	218	195	199	11.9999
ddee	chr16:48418955-48419243(-)$1	288	136	140	11.9999
::ff	chr22:39711180-39711410(-)$1	230	20	24	11.9999
mmdd	chr12:6619499-6619713(+)$1	214	8	12	11.9999
a]dd	chr3:160232787-160232994(-)$1	207	126	130	11.9999
hhhh	chr17:73774724-73774970(-)$1	246	107	111	11.9999
ccEE	chr19:41271066-41271310(+)$1	244	44	48	11.9999
mmee	chr16:1424490-1424777(-)$1	287	133	137	11.9999
EEEE	chr1:182360379-182360641(-)$1	262	28	32	11.9999
eeem	chr5:137685007-137685289(+)$1	282	28	32	11.9999
BBDD	chr6:31937067-31937359(+)$1	292	5	9	11.9999
!bb#	chrX:154003010-154003284(+)$1	274	169	173	11.9999
EEEE	chr19:49606819-49607070(+)$1	251	73	77	11.9999
hhh!	chr16:88961785-88962032(-)$1	247	34	38	11.9999
[ccc	chr19:2270021-2270300(+)$1	279	13	17	11.9999
ccc[	chr2:216300345-216300618(-)$1	273	67	71	11.9999
DDDD	chr3:184043391-184043625(+)$1	234	10	14	11.9999
dddd	chr16:89042863-89043146(-)$1	283	71	75	11.9999
eeee	chr14:94849370-94849659(-)$1	289	51	55	11.9999
a[cc	chr12:7076408-7076644(-)$1	236	103	107	11.9999
A}CC	chr1:109642835-109643053(+)$1	218	193	197	11.9999
::::	chr20:17943371-17943603(-)$1	232	0	4	11.9999
GGGG	chr1:988504-988747(+)$1	243	189	193	11.9999
c]bb	chr12:133356648-133356874(-)$1	226	112	116	11.9999
gggg	chr14:105632369-105632619(-)$1	250	25	29	11.9999
JJJJ	chr11:93454887-93455092(+)$1	205	75	79	11.9999
GGGG	chr19:11664172-11664514(-)$1	342	53	57	11.9999
hhEE	chr2:234197395-234197627(+)$1	232	29	33	11.9999
a[dd	chr2:97559941-97560164(-)$1	223	129	133	11.9999
ddd2	chr1:226066403-226066713(-)$1	310	57	61	11.9999
:DDD	chr11:111730982-111731365(-)$1	383	6	10	11.9999
hhhh	chr14:19889638-19889906(-)$1	268	38	42	11.9999
====	chr17:7480094-7480310(+)$1	216	114	118	11.9999
22cc	chr7:6677615-6677870(+)$1	255	64	68	11.9999
da[b	chr3:160232738-160232945(-)$1	207	77	81	11.9999
"""f	chr16:88960960-88961200(-)$1	240	6	10	11.9999
II:=	chr17:27050391-27050608(+)$1	217	55	59	11.9999

#DB
.)))	chr19:941749-942007(+)$1	1	132	136	11.9999
.(((	chr5:109035336-109035590(-)$1	1	63	67	11.9999
(.((	chr7:933002-933287(+)$1	1	2	6	11.9999
))).	chr6:31802939-31803160(+)$1	1	50	54	11.9999
))))	chr16:1424633-1424862(-)$1	1	218	222	11.9999
.(((	chr12:124917570-124917880(-)$1	1	7	11	11.9999
((((	chr8:650456-650688(-)$1	1	125	129	11.9999
((((	chr7:5569554-5569805(-)$1	1	21	25	11.9999
)...	chr15:66795117-66795350(-)$1	1	73	77	11.9999
(.((	chr11:93454734-93454987(+)$1	1	84	88	11.9999
(.((	chr11:93454679-93454890(+)$1	1	139	143	11.9999
(...	chr19:575249-575520(+)$1	1	10	14	11.9999
((((	chr11:123172129-123172333(+)$1	1	8	12	11.9999
(((.	chr14:90178795-90179098(+)$1	1	67	71	11.9999
((((	chr14:105625520-105625776(-)$1	1	9	13	11.9999
...(	chr3:13418961-13419228(-)$1	1	11	15	11.9999
))))	chr1:173836735-173836980(-)$1	1	203	207	11.9999
((((	chr19:10218241-10218500(+)$1	1	167	171	11.9999
(((.	chr16:30107137-30107408(-)$1	1	9	13	11.9999
))))	chr7:48672248-48672502(+)$1	1	51	55	11.9999
((((	chr16:88580954-88581294(+)$1	1	18	22	11.9999
((((	chr8:11667941-11668234(+)$1	1	12	16	11.9999
..((	chr19:41883359-41883615(+)$1	1	12	16	11.9999
((((	chr16:620987-621281(+)$1	1	5	9	11.9999
))))	chr19:49605901-49606140(+)$1	1	21	25	11.9999
..((	chr13:21436189-21436476(-)$1	1	250	254	11.9999
(((.	chr11:47377097-47377354(-)$1	1	128	132	11.9999
.(.(	chr13:113207309-113207618(-)$1	1	82	86	11.9999
.(((	chr6:31804756-31804974(+)$1	1	195	199	11.9999
((((	chr16:48418955-48419243(-)$1	1	136	140	11.9999
..((	chr22:39711180-39711410(-)$1	1	20	24	11.9999
..))	chr12:6619499-6619713(+)$1	1	8	12	11.9999
).))	chr3:160232787-160232994(-)$1	1	126	130	11.9999
((((	chr17:73774724-73774970(-)$1	1	107	111	11.9999
))((	chr19:41271066-41271310(+)$1	1	44	48	11.9999
..))	chr16:1424490-1424777(-)$1	1	133	137	11.9999
((((	chr1:182360379-182360641(-)$1	1	28	32	11.9999
(((.	chr5:137685007-137685289(+)$1	1	28	32	11.9999
((((	chr6:31937067-31937359(+)$1	1	5	9	11.9999
.((.	chrX:154003010-154003284(+)$1	1	169	173	11.9999
((((	chr19:49606819-49607070(+)$1	1	73	77	11.9999
(((.	chr16:88961785-88962032(-)$1	1	34	38	11.9999
.(((	chr19:2270021-2270300(+)$1	1	13	17	11.9999
(((.	chr2:216300345-216300618(-)$1	1	67	71	11.9999
((((	chr3:184043391-184043625(+)$1	1	10	14	11.9999
((((	chr16:89042863-89043146(-)$1	1	71	75	11.9999
((((	chr14:94849370-94849659(-)$1	1	51	55	11.9999
(.((	chr12:7076408-7076644(-)$1	1	103	107	11.9999
).))	chr1:109642835-109643053(+)$1	1	193	197	11.9999
....	chr20:17943371-17943603(-)$1	1	0	4	11.9999
))))	chr1:988504-988747(+)$1	1	189	193	11.9999
).))	chr12:133356648-133356874(-)$1	1	112	116	11.9999
((((	chr14:105632369-105632619(-)$1	1	25	29	11.9999
((((	chr11:93454887-93455092(+)$1	1	75	79	11.9999
((((	chr19:11664172-11664514(-)$1	1	53	57	11.9999
))((	chr2:234197395-234197627(+)$1	1	29	33	11.9999
(.((	chr2:97559941-97560164(-)$1	1	129	133	11.9999
))).	chr1:226066403-226066713(-)$1	1	57	61	11.9999
.(((	chr11:111730982-111731365(-)$1	1	6	10	11.9999
))))	chr14:19889638-19889906(-)$1	1	38	42	11.9999
))))	chr17:7480094-7480310(+)$1	1	114	118	11.9999
..))	chr7:6677615-6677870(+)$1	1	64	68	11.9999
((.(	chr3:160232738-160232945(-)$1	1	77	81	11.9999
...(	chr16:88960960-88961200(-)$1	1	6	10	11.9999
((.(	chr17:27050391-27050608(+)$1	1	55	59	11.9999

#PSSM
G : 0.87	g : 0.12	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
C : 0.86	c : 0.13	

#score	779.9999999999998
#seq	65
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_transcript_m2_run1.nuc.txt

#NT
GUGUUUGUGUG	chr9:136216196-136216426(+)$1	230	45	56	22.7435
guggguguaug	chr10:74885763-74886006(-)$1	243	200	211	20.8205
GUCAGUGUGUG	chr2:234184489-234184709(+)$1	220	29	40	24.6666
GUCAGUGUGUG	chr2:234184399-234184619(+)$1	220	119	130	24.6666
GAGAGUGUGUA	chr3:160232787-160233007(-)$1	220	93	104	20.0512
GUGAGUGUGUG	chr1:109642851-109643056(+)$1	205	58	69	28.3846
GAGAGUGUGUA	chr3:160232763-160232987(-)$1	224	73	84	20.0512
GUGAGUGUGUG	chr1:109642801-109643006(+)$1	205	108	119	28.3846
GUCAGUGUGUG	chr2:234184373-234184599(+)$1	226	145	156	24.6666
gugugugugug	chr7:98479282-98479498(+)$1	216	93	104	26.5897
GUGAGUGUGUG	chr1:109642836-109643051(+)$1	215	73	84	28.3846
GUGGUUGUGUG	chr9:136216892-136217116(+)$1	224	185	196	21.7179
GUGAGUGUGUG	chr1:109642828-109643031(+)$1	203	81	92	28.3846
GUGUUUGUGUG	chr9:136216148-136216396(+)$1	248	93	104	22.7435
GUCAGUGUGUG	chr2:234184421-234184630(+)$1	209	97	108	24.6666
GUGAGUGUGUG	chr1:109642891-109643093(+)$1	202	18	29	28.3846
GUGAGUGUGUG	chr1:109642788-109642995(+)$1	207	121	132	28.3846
gugugugugug	chr11:93454855-93455094(+)$1	239	0	11	26.5897
GUGAGUGUGUG	chr1:109642859-109643065(+)$1	206	50	61	28.3846
gugugugugug	chr11:93454824-93455036(+)$1	212	7	18	26.5897
gugugugugug	chr7:98479271-98479482(+)$1	211	104	115	26.5897
gugugugugug	chr7:98479339-98479560(+)$1	221	36	47	26.5897
UUGAGUGUGUC	chr6:31802963-31803190(+)$1	227	100	111	19.2820
GAGAGUGUGUA	chr3:160232850-160233088(-)$1	238	174	185	20.0512
GUGAGUGUGUG	chr1:109642856-109643059(+)$1	203	53	64	28.3846
GUGAGUGUGGG	chr17:7809304-7809732(+)$1	428	3	14	23.7692
GUCAGUGUGUG	chr2:234184452-234184656(+)$1	204	66	77	24.6666
GUGAGUGUGUG	chr1:109642898-109643102(+)$1	204	11	22	28.3846
gugagcgugug	chr12:48176434-48176754(-)$1	320	113	124	23.6410
gugugugugug	chr11:93454624-93454866(+)$1	242	207	218	26.5897
gugugugugug	chr7:98479360-98479572(+)$1	212	15	26	26.5897
GUGAGUGUGUG	chr1:109642808-109643018(+)$1	210	101	112	28.3846
GUGAGUGUGUG	chr1:109642822-109643028(+)$1	206	87	98	28.3846
gugugugugug	chr7:98479329-98479539(+)$1	210	46	57	26.5897
GUGAGUGUGUG	chr1:109642781-109642988(+)$1	207	128	139	28.3846
GUGGUUGUGUG	chr9:136216860-136217092(+)$1	232	217	228	21.7179
GUGACUGUGAG	chr5:651391-651718(+)$1	327	7	18	19.5384
GUGAGUGUGUG	chr1:109642875-109643091(+)$1	216	34	45	28.3846

#otherMatches

#Struct PSSM
c"""eeeeemm	chr7:98479298-98479517(+)$1	219	77	88	26.5897
===&&&&&&&g	chr9:136216196-136216426(+)$1	230	45	56	22.7435
eeeeeA}GGGG	chr10:74885763-74886006(-)$1	243	200	211	20.8205
gggggg[dddd	chr2:234184489-234184709(+)$1	220	29	40	24.6666
ffffff[dddd	chr2:234184399-234184619(+)$1	220	119	130	24.6666
ffffff22===	chr3:160232787-160233007(-)$1	220	93	104	20.0512
::::::::ccc	chr1:109642851-109643056(+)$1	205	58	69	28.3846
ffffff22===	chr3:160232763-160232987(-)$1	224	73	84	20.0512
mmmmdddd]bb	chr1:109642801-109643006(+)$1	205	108	119	28.3846
ffffff[dddd	chr2:234184373-234184599(+)$1	226	145	156	24.6666
c"""eeeeemm	chr7:98479282-98479498(+)$1	216	93	104	26.5897
::::::::ccc	chr1:109642836-109643051(+)$1	215	73	84	28.3846
44bb22bb]hh	chr9:136216892-136217116(+)$1	224	185	196	21.7179
::::::::ccc	chr1:109642828-109643031(+)$1	203	81	92	28.3846
fffff[eeeee	chr9:136216148-136216396(+)$1	248	93	104	22.7435
ffffff[dddd	chr2:234184421-234184630(+)$1	209	97	108	24.6666
dd[bb[a[ccc	chr1:109642891-109643093(+)$1	202	18	29	28.3846
::::::::ccc	chr1:109642788-109642995(+)$1	207	121	132	28.3846
hhhhhhhhmmm	chr11:93454855-93455094(+)$1	239	0	11	26.5897
dd[bb[a[ccc	chr1:109642859-109643065(+)$1	206	50	61	28.3846
FFFFFccc[cc	chr11:93454824-93455036(+)$1	212	7	18	26.5897
c"""eeeeemm	chr7:98479271-98479482(+)$1	211	104	115	26.5897
:EEEEEKKEEE	chr7:98479339-98479560(+)$1	221	36	47	26.5897
::ffffff!!b	chr6:31802963-31803190(+)$1	227	100	111	19.2820
:::::HHHHHH	chr3:160232850-160233088(-)$1	238	174	185	20.0512
dd[bb[a[ccc	chr1:109642856-109643059(+)$1	203	53	64	28.3846
:ffffff[ddd	chr17:7809304-7809732(+)$1	428	3	14	23.7692
gggggg[dddd	chr2:234184452-234184656(+)$1	204	66	77	24.6666
d[a[a[ccc[a	chr1:109642898-109643102(+)$1	204	11	22	28.3846
CC=========	chr12:48176434-48176754(-)$1	320	113	124	23.6410
ffffff]a333	chr11:93454624-93454866(+)$1	242	207	218	26.5897
c"""eeeeemm	chr7:98479360-98479572(+)$1	212	15	26	26.5897
::::::::ccc	chr1:109642808-109643018(+)$1	210	101	112	28.3846
::::::::ccc	chr1:109642822-109643028(+)$1	206	87	98	28.3846
c"""eeeeemm	chr7:98479329-98479539(+)$1	210	46	57	26.5897
::::::::ccc	chr1:109642781-109642988(+)$1	207	128	139	28.3846
c]ffffffFFF	chr9:136216860-136217092(+)$1	232	217	228	21.7179
[a[bb[bb[a[	chr5:651391-651718(+)$1	327	7	18	19.5384
dd[bb[a[ccc	chr1:109642875-109643091(+)$1	216	34	45	28.3846

#DB
(...(((((..	chr7:98479298-98479517(+)$1	1	77	88	26.5897
(((.......(	chr9:136216196-136216426(+)$1	1	45	56	22.7435
)))))).))))	chr10:74885763-74886006(-)$1	1	200	211	20.8205
((((((.((((	chr2:234184489-234184709(+)$1	1	29	40	24.6666
((((((.((((	chr2:234184399-234184619(+)$1	1	119	130	24.6666
))))))..)))	chr3:160232787-160233007(-)$1	1	93	104	20.0512
........(((	chr1:109642851-109643056(+)$1	1	58	69	28.3846
))))))..)))	chr3:160232763-160232987(-)$1	1	73	84	20.0512
....)))).))	chr1:109642801-109643006(+)$1	1	108	119	28.3846
((((((.((((	chr2:234184373-234184599(+)$1	1	145	156	24.6666
(...(((((..	chr7:98479282-98479498(+)$1	1	93	104	26.5897
........(((	chr1:109642836-109643051(+)$1	1	73	84	28.3846
..))..)).))	chr9:136216892-136217116(+)$1	1	185	196	21.7179
........(((	chr1:109642828-109643031(+)$1	1	81	92	28.3846
(((((.(((((	chr9:136216148-136216396(+)$1	1	93	104	22.7435
((((((.((((	chr2:234184421-234184630(+)$1	1	97	108	24.6666
((.((.(.(((	chr1:109642891-109643093(+)$1	1	18	29	28.3846
........(((	chr1:109642788-109642995(+)$1	1	121	132	28.3846
((((((((...	chr11:93454855-93455094(+)$1	1	0	11	26.5897
((.((.(.(((	chr1:109642859-109643065(+)$1	1	50	61	28.3846
((((((((.((	chr11:93454824-93455036(+)$1	1	7	18	26.5897
(...(((((..	chr7:98479271-98479482(+)$1	1	104	115	26.5897
.(((((..(((	chr7:98479339-98479560(+)$1	1	36	47	26.5897
..((((((..(	chr6:31802963-31803190(+)$1	1	100	111	19.2820
.....))))))	chr3:160232850-160233088(-)$1	1	174	185	20.0512
((.((.(.(((	chr1:109642856-109643059(+)$1	1	53	64	28.3846
.((((((.(((	chr17:7809304-7809732(+)$1	1	3	14	23.7692
((((((.((((	chr2:234184452-234184656(+)$1	1	66	77	24.6666
(.(.(.(((.(	chr1:109642898-109643102(+)$1	1	11	22	28.3846
(((((((((((	chr12:48176434-48176754(-)$1	1	113	124	23.6410
)))))).)...	chr11:93454624-93454866(+)$1	1	207	218	26.5897
(...(((((..	chr7:98479360-98479572(+)$1	1	15	26	26.5897
........(((	chr1:109642808-109643018(+)$1	1	101	112	28.3846
........(((	chr1:109642822-109643028(+)$1	1	87	98	28.3846
(...(((((..	chr7:98479329-98479539(+)$1	1	46	57	26.5897
........(((	chr1:109642781-109642988(+)$1	1	128	139	28.3846
).)))))))))	chr9:136216860-136217092(+)$1	1	217	228	21.7179
.(.((.((.(.	chr5:651391-651718(+)$1	1	7	18	19.5384
((.((.(.(((	chr1:109642875-109643091(+)$1	1	34	45	28.3846

#PSSM
G : 0.69	g : 0.28	U : 0.02	
U : 0.64	u : 0.28	A : 0.07	
G : 0.58	g : 0.28	C : 0.12	
A : 0.61	u : 0.23	U : 0.05	G : 0.05	g : 0.02	a : 0.02	
G : 0.58	g : 0.28	U : 0.10	C : 0.02	
U : 0.71	u : 0.25	c : 0.02	
G : 0.71	g : 0.28	
U : 0.71	u : 0.28	
G : 0.71	g : 0.25	a : 0.02	
U : 0.66	u : 0.28	G : 0.02	A : 0.02	
G : 0.61	g : 0.28	A : 0.07	C : 0.02	

#score	987.7692307692314
#seq	39
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_UTR_m1_run1.nuc.txt

#NT
CCUCC	chrX:153671572-153671842(+)$1	270	214	219	15.0000
CCUCC	chr20:2443272-2443497(-)$1	225	104	109	15.0000
CCUCC	chr2:242168727-242169012(-)$1	285	84	89	15.0000
ccucc	chr1:27634471-27634723(+)$1	252	72	77	15.0000
ccucc	chrX:133930222-133930461(-)$1	239	16	21	15.0000
CCUCC	chr17:41167678-41167979(-)$1	301	6	11	15.0000
CCUCC	chr19:10427390-10427689(-)$1	299	194	199	15.0000
CCUCC	chr18:34376606-34376991(-)$1	385	156	161	15.0000
CCUCC	chr7:150070570-150070831(+)$1	261	3	8	15.0000
CCUCC	chr15:91426343-91426640(+)$1	297	37	42	15.0000
CCUCC	chr17:76170646-76170945(-)$1	299	273	278	15.0000
CCUCC	chr20:36758036-36758300(-)$1	264	191	196	15.0000
CCUCC	chr11:63743814-63744077(+)$1	263	59	64	15.0000
CCUCC	chr22:43563787-43564068(-)$1	281	138	143	15.0000
CCUCC	chr6:34213135-34213385(+)$1	250	223	228	15.0000
CCUCC	chr1:150241101-150241451(-)$1	350	186	191	15.0000
CCUCC	chr7:143079339-143079624(+)$1	285	12	17	15.0000
CCUCC	chr16:69599844-69600116(+)$1	272	172	177	15.0000
CCUCC	chr6:32136781-32137070(-)$1	289	36	41	15.0000
CCUCC	chr17:45727212-45727520(+)$1	308	18	23	15.0000
CCUCC	chr10:97050575-97050860(-)$1	285	208	213	15.0000
CCUCC	chr1:26607537-26607766(+)$1	229	195	200	15.0000
CCUCC	chr1:31342460-31342739(-)$1	279	73	78	15.0000
CCUCC	chr19:3053101-3053375(-)$1	274	35	40	15.0000
CCUCC	chr1:93645614-93645885(-)$1	271	137	142	15.0000
CCUCC	chr19:14073052-14073341(-)$1	289	114	119	15.0000
CCUCC	chr11:66010662-66010926(+)$1	264	112	117	15.0000
CCUCC	chr16:28847999-28848216(+)$1	217	38	43	15.0000
CCUCC	chr20:48698580-48698854(-)$1	274	123	128	15.0000
CCUCC	chr19:52729132-52729382(+)$1	250	140	145	15.0000
ccucc	chr1:36805686-36805973(-)$1	287	47	52	15.0000
CCUCC	chr17:47788064-47788312(-)$1	248	91	96	15.0000
CCUCC	chr3:160117562-160117828(+)$1	266	117	122	15.0000
CCUCC	chr11:66413528-66413828(+)$1	300	258	263	15.0000
CCUCC	chr17:79825682-79825950(-)$1	268	105	110	15.0000
CCUCC	chr19:47112571-47112821(+)$1	250	112	117	15.0000
ccucc	chr1:224621755-224622012(-)$1	257	61	66	15.0000
CCUCC	chr16:87866325-87866615(-)$1	290	97	102	15.0000
CCUCC	chr12:120649746-120650066(-)$1	320	66	71	15.0000
CCUCC	chr16:88709632-88709933(-)$1	301	190	195	15.0000
CCUCC	chr19:48894660-48894909(-)$1	249	66	71	15.0000
CCUCC	chr19:13249189-13249506(+)$1	317	40	45	15.0000
CCUCC	chr6:34212785-34213018(+)$1	233	141	146	15.0000
CCUCC	chr19:6414889-6415215(-)$1	326	82	87	15.0000
CCUCC	chr17:46699951-46700237(-)$1	286	122	127	15.0000
CCUCC	chr1:156006523-156006811(-)$1	288	57	62	15.0000
CCUCC	chr22:20939916-20940194(+)$1	278	3	8	15.0000
CCUCC	chr19:11032572-11032810(+)$1	238	41	46	15.0000
CCUCC	chr17:48460223-48460503(-)$1	280	118	123	15.0000
CCUCC	chr19:47990863-47991140(-)$1	277	72	77	15.0000
CCUCC	chr7:135661788-135662082(-)$1	294	107	112	15.0000
ccucc	chr11:64089077-64089333(+)$1	256	106	111	15.0000
ccucc	chr12:57824521-57824866(-)$1	345	104	109	15.0000
CCUCC	chr17:48212007-48212245(-)$1	238	55	60	15.0000
CCUCC	chr1:160328125-160328403(+)$1	278	25	30	15.0000
CCUCC	chr19:305811-306083(-)$1	272	35	40	15.0000
CCUCC	chr5:175955588-175955860(-)$1	272	27	32	15.0000
CCUCC	chrX:64959969-64960211(+)$1	242	151	156	15.0000
CCUCC	chr3:128199646-128199941(-)$1	295	18	23	15.0000
CCUCC	chr16:70605596-70605896(+)$1	300	122	127	15.0000
CCUCC	chr2:27264180-27264503(+)$1	323	36	41	15.0000
CCUCC	chr15:75137253-75137520(-)$1	267	98	103	15.0000
CCUCC	chr7:75517922-75518250(+)$1	328	79	84	15.0000
CCUCC	chr19:1815605-1815884(-)$1	279	6	11	15.0000
CCUCC	chr9:133761850-133762103(+)$1	253	48	53	15.0000
CCUCC	chr4:54294148-54294451(+)$1	303	96	101	15.0000
CCUCC	chr1:207925421-207925751(+)$1	330	101	106	15.0000
CCUCC	chr20:30253131-30253420(-)$1	289	235	240	15.0000
CCUCC	chr10:102106794-102107136(+)$1	342	152	157	15.0000
ccucc	chr10:98984981-98985252(-)$1	271	120	125	15.0000
CCUCC	chr6:42988782-42989069(+)$1	287	41	46	15.0000
CCUCC	chr10:81932462-81932725(-)$1	263	253	258	15.0000
CCUCC	chr1:150238466-150238771(-)$1	305	158	163	15.0000
CCUCC	chr16:30096426-30096687(+)$1	261	133	138	15.0000
CCUCC	chr19:4361485-4361746(-)$1	261	173	178	15.0000
CCUCC	chr20:44576390-44576712(+)$1	322	129	134	15.0000
CCUCC	chr14:23595713-23595999(-)$1	286	128	133	15.0000
CCUCC	chr15:59397284-59397567(+)$1	283	120	125	15.0000
CCUCC	chr6:89790506-89790762(+)$1	256	177	182	15.0000
CCUCC	chr17:79890713-79890987(-)$1	274	115	120	15.0000
CCUCC	chr15:67835408-67835652(+)$1	244	41	46	15.0000
ccucc	chr12:53845904-53846129(+)$1	225	43	48	15.0000

#otherMatches

#Struct PSSM
EEEE:	chr19:8468398-8468639(+)$1	241	52	57	15.0000
YA~~~	chrX:153671572-153671842(+)$1	270	214	219	15.0000
%%%%%	chr20:2443272-2443497(-)$1	225	104	109	15.0000
:::::	chr2:242168727-242169012(-)$1	285	84	89	15.0000
:::::	chr1:27634471-27634723(+)$1	252	72	77	15.0000
:::::	chrX:133930222-133930461(-)$1	239	16	21	15.0000
HHHHH	chr17:41167678-41167979(-)$1	301	6	11	15.0000
555dd	chr19:10427390-10427689(-)$1	299	194	199	15.0000
emmmm	chr18:34376606-34376991(-)$1	385	156	161	15.0000
:::::	chr7:150070570-150070831(+)$1	261	3	8	15.0000
:::::	chr15:91426343-91426640(+)$1	297	37	42	15.0000
EEE}B	chr17:76170646-76170945(-)$1	299	273	278	15.0000
ffddd	chr20:36758036-36758300(-)$1	264	191	196	15.0000
66666	chr11:63743814-63744077(+)$1	263	59	64	15.0000
CCCEE	chr22:43563787-43564068(-)$1	281	138	143	15.0000
?????	chr6:34213135-34213385(+)$1	250	223	228	15.0000
:::ee	chr1:150241101-150241451(-)$1	350	186	191	15.0000
d[bba	chr7:143079339-143079624(+)$1	285	12	17	15.0000
offff	chr16:69599844-69600116(+)$1	272	172	177	15.0000
555dd	chr6:32136781-32137070(-)$1	289	36	41	15.0000
bhhhh	chr17:45727212-45727520(+)$1	308	18	23	15.0000
g::::	chr10:97050575-97050860(-)$1	285	208	213	15.0000
d]bb0	chr1:26607537-26607766(+)$1	229	195	200	15.0000
:::::	chr1:31342460-31342739(-)$1	279	73	78	15.0000
GGG{D	chr19:3053101-3053375(-)$1	274	35	40	15.0000
ee[dd	chr1:93645614-93645885(-)$1	271	137	142	15.0000
55ccc	chr19:14073052-14073341(-)$1	289	114	119	15.0000
dd22d	chr11:66010662-66010926(+)$1	264	112	117	15.0000
""bba	chr16:28847999-28848216(+)$1	217	38	43	15.0000
AYYBB	chr20:48698580-48698854(-)$1	274	123	128	15.0000
EEEEE	chr19:52729132-52729382(+)$1	250	140	145	15.0000
accc3	chr1:36805686-36805973(-)$1	287	47	52	15.0000
LLLDD	chr17:47788064-47788312(-)$1	248	91	96	15.0000
+++++	chr3:160117562-160117828(+)$1	266	117	122	15.0000
ff]bb	chr11:66413528-66413828(+)$1	300	258	263	15.0000
CBBKK	chr17:79825682-79825950(-)$1	268	105	110	15.0000
$$$$$	chr19:47112571-47112821(+)$1	250	112	117	15.0000
]dddd	chr1:224621755-224622012(-)$1	257	61	66	15.0000
dddd:	chr16:87866325-87866615(-)$1	290	97	102	15.0000
eeeee	chr12:120649746-120650066(-)$1	320	66	71	15.0000
CC}FF	chr16:88709632-88709933(-)$1	301	190	195	15.0000
44fff	chr19:48894660-48894909(-)$1	249	66	71	15.0000
bnnnn	chr19:13249189-13249506(+)$1	317	40	45	15.0000
bbmmm	chr6:34212785-34213018(+)$1	233	141	146	15.0000
TTTTT	chr19:6414889-6415215(-)$1	326	82	87	15.0000
2dddd	chr17:46699951-46700237(-)$1	286	122	127	15.0000
JJJJ:	chr1:156006523-156006811(-)$1	288	57	62	15.0000
:DDDD	chr22:20939916-20940194(+)$1	278	3	8	15.0000
^^^^^	chr19:11032572-11032810(+)$1	238	41	46	15.0000
ggg::	chr17:48460223-48460503(-)$1	280	118	123	15.0000
hhhhh	chr19:47990863-47991140(-)$1	277	72	77	15.0000
::BB{	chr7:135661788-135662082(-)$1	294	107	112	15.0000
^^^^^	chr11:64089077-64089333(+)$1	256	106	111	15.0000
333ff	chr12:57824521-57824866(-)$1	345	104	109	15.0000
hhhhh	chr17:48212007-48212245(-)$1	238	55	60	15.0000
PPPPP	chr1:160328125-160328403(+)$1	278	25	30	15.0000
MMEEE	chr19:305811-306083(-)$1	272	35	40	15.0000
qqqqq	chr5:175955588-175955860(-)$1	272	27	32	15.0000
DDDD:	chrX:64959969-64960211(+)$1	242	151	156	15.0000
ddd$$	chr3:128199646-128199941(-)$1	295	18	23	15.0000
gggbb	chr16:70605596-70605896(+)$1	300	122	127	15.0000
!!eee	chr2:27264180-27264503(+)$1	323	36	41	15.0000
ggggg	chr15:75137253-75137520(-)$1	267	98	103	15.0000
eee::	chr7:75517922-75518250(+)$1	328	79	84	15.0000
:::::	chr19:1815605-1815884(-)$1	279	6	11	15.0000
eee[d	chr9:133761850-133762103(+)$1	253	48	53	15.0000
LCCCA	chr4:54294148-54294451(+)$1	303	96	101	15.0000
dddhh	chr1:207925421-207925751(+)$1	330	101	106	15.0000
nnddd	chr20:30253131-30253420(-)$1	289	235	240	15.0000
ccc]e	chr10:102106794-102107136(+)$1	342	152	157	15.0000
00000	chr10:98984981-98985252(-)$1	271	120	125	15.0000
2eeee	chr6:42988782-42989069(+)$1	287	41	46	15.0000
ggg]d	chr10:81932462-81932725(-)$1	263	253	258	15.0000
yyyyy	chr1:150238466-150238771(-)$1	305	158	163	15.0000
]dddd	chr16:30096426-30096687(+)$1	261	133	138	15.0000
BB}EE	chr19:4361485-4361746(-)$1	261	173	178	15.0000
IIIII	chr20:44576390-44576712(+)$1	322	129	134	15.0000
33eee	chr14:23595713-23595999(-)$1	286	128	133	15.0000
bbccc	chr15:59397284-59397567(+)$1	283	120	125	15.0000
::::c	chr6:89790506-89790762(+)$1	256	177	182	15.0000
GGGGG	chr17:79890713-79890987(-)$1	274	115	120	15.0000
sssss	chr15:67835408-67835652(+)$1	244	41	46	15.0000
nnnnn	chr12:53845904-53846129(+)$1	225	43	48	15.0000

#DB
((((.	chr19:8468398-8468639(+)$1	1	52	57	15.0000
.)...	chrX:153671572-153671842(+)$1	1	214	219	15.0000
.....	chr20:2443272-2443497(-)$1	1	104	109	15.0000
.....	chr2:242168727-242169012(-)$1	1	84	89	15.0000
.....	chr1:27634471-27634723(+)$1	1	72	77	15.0000
.....	chrX:133930222-133930461(-)$1	1	16	21	15.0000
(((((	chr17:41167678-41167979(-)$1	1	6	11	15.0000
...))	chr19:10427390-10427689(-)$1	1	194	199	15.0000
(....	chr18:34376606-34376991(-)$1	1	156	161	15.0000
.....	chr7:150070570-150070831(+)$1	1	3	8	15.0000
.....	chr15:91426343-91426640(+)$1	1	37	42	15.0000
))).)	chr17:76170646-76170945(-)$1	1	273	278	15.0000
)))))	chr20:36758036-36758300(-)$1	1	191	196	15.0000
.....	chr11:63743814-63744077(+)$1	1	59	64	15.0000
)))))	chr22:43563787-43564068(-)$1	1	138	143	15.0000
.....	chr6:34213135-34213385(+)$1	1	223	228	15.0000
...((	chr1:150241101-150241451(-)$1	1	186	191	15.0000
(.(((	chr7:143079339-143079624(+)$1	1	12	17	15.0000
.))))	chr16:69599844-69600116(+)$1	1	172	177	15.0000
...))	chr6:32136781-32137070(-)$1	1	36	41	15.0000
)))))	chr17:45727212-45727520(+)$1	1	18	23	15.0000
)....	chr10:97050575-97050860(-)$1	1	208	213	15.0000
).)).	chr1:26607537-26607766(+)$1	1	195	200	15.0000
.....	chr1:31342460-31342739(-)$1	1	73	78	15.0000
(((.(	chr19:3053101-3053375(-)$1	1	35	40	15.0000
((.((	chr1:93645614-93645885(-)$1	1	137	142	15.0000
..)))	chr19:14073052-14073341(-)$1	1	114	119	15.0000
))..)	chr11:66010662-66010926(+)$1	1	112	117	15.0000
..(((	chr16:28847999-28848216(+)$1	1	38	43	15.0000
)..))	chr20:48698580-48698854(-)$1	1	123	128	15.0000
)))))	chr19:52729132-52729382(+)$1	1	140	145	15.0000
)))).	chr1:36805686-36805973(-)$1	1	47	52	15.0000
...((	chr17:47788064-47788312(-)$1	1	91	96	15.0000
.....	chr3:160117562-160117828(+)$1	1	117	122	15.0000
)).))	chr11:66413528-66413828(+)$1	1	258	263	15.0000
(((..	chr17:79825682-79825950(-)$1	1	105	110	15.0000
.....	chr19:47112571-47112821(+)$1	1	112	117	15.0000
.))))	chr1:224621755-224622012(-)$1	1	61	66	15.0000
)))).	chr16:87866325-87866615(-)$1	1	97	102	15.0000
(((((	chr12:120649746-120650066(-)$1	1	66	71	15.0000
)).))	chr16:88709632-88709933(-)$1	1	190	195	15.0000
..)))	chr19:48894660-48894909(-)$1	1	66	71	15.0000
(....	chr19:13249189-13249506(+)$1	1	40	45	15.0000
((...	chr6:34212785-34213018(+)$1	1	141	146	15.0000
.....	chr19:6414889-6415215(-)$1	1	82	87	15.0000
.))))	chr17:46699951-46700237(-)$1	1	122	127	15.0000
((((.	chr1:156006523-156006811(-)$1	1	57	62	15.0000
.((((	chr22:20939916-20940194(+)$1	1	3	8	15.0000
.....	chr19:11032572-11032810(+)$1	1	41	46	15.0000
)))..	chr17:48460223-48460503(-)$1	1	118	123	15.0000
)))))	chr19:47990863-47991140(-)$1	1	72	77	15.0000
..((.	chr7:135661788-135662082(-)$1	1	107	112	15.0000
.....	chr11:64089077-64089333(+)$1	1	106	111	15.0000
...))	chr12:57824521-57824866(-)$1	1	104	109	15.0000
(((((	chr17:48212007-48212245(-)$1	1	55	60	15.0000
.....	chr1:160328125-160328403(+)$1	1	25	30	15.0000
..(((	chr19:305811-306083(-)$1	1	35	40	15.0000
.....	chr5:175955588-175955860(-)$1	1	27	32	15.0000
)))).	chrX:64959969-64960211(+)$1	1	151	156	15.0000
(((..	chr3:128199646-128199941(-)$1	1	18	23	15.0000
(((((	chr16:70605596-70605896(+)$1	1	122	127	15.0000
..(((	chr2:27264180-27264503(+)$1	1	36	41	15.0000
)))))	chr15:75137253-75137520(-)$1	1	98	103	15.0000
)))..	chr7:75517922-75518250(+)$1	1	79	84	15.0000
.....	chr19:1815605-1815884(-)$1	1	6	11	15.0000
(((.(	chr9:133761850-133762103(+)$1	1	48	53	15.0000
.((((	chr4:54294148-54294451(+)$1	1	96	101	15.0000
(((((	chr1:207925421-207925751(+)$1	1	101	106	15.0000
..)))	chr20:30253131-30253420(-)$1	1	235	240	15.0000
))).)	chr10:102106794-102107136(+)$1	1	152	157	15.0000
.....	chr10:98984981-98985252(-)$1	1	120	125	15.0000
.))))	chr6:42988782-42989069(+)$1	1	41	46	15.0000
))).)	chr10:81932462-81932725(-)$1	1	253	258	15.0000
.....	chr1:150238466-150238771(-)$1	1	158	163	15.0000
.))))	chr16:30096426-30096687(+)$1	1	133	138	15.0000
)).))	chr19:4361485-4361746(-)$1	1	173	178	15.0000
)))))	chr20:44576390-44576712(+)$1	1	129	134	15.0000
..)))	chr14:23595713-23595999(-)$1	1	128	133	15.0000
)))))	chr15:59397284-59397567(+)$1	1	120	125	15.0000
....(	chr6:89790506-89790762(+)$1	1	177	182	15.0000
)))))	chr17:79890713-79890987(-)$1	1	115	120	15.0000
.....	chr15:67835408-67835652(+)$1	1	41	46	15.0000
.....	chr12:53845904-53846129(+)$1	1	43	48	15.0000

#PSSM
C : 0.90	c : 0.09	
C : 0.90	c : 0.09	
U : 0.90	u : 0.09	
C : 0.90	c : 0.09	
C : 0.90	c : 0.09	

#score	1245.0000000000005
#seq	83
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_transcript_m2_run2.nuc.txt

#NT
GGGGCAGC	chr19:5690652-5690898(+)$1	246	202	210	16.3076
GGGGGUGC	chr2:172379302-172379671(+)$1	369	175	183	15.8461
UGGGCUGC	chr19:1627608-1627863(-)$1	255	140	148	15.3846
GGGGGUGC	chr22:20111804-20112085(+)$1	281	212	220	15.8461
ggggccgc	chr22:23522985-23523231(+)$1	246	62	70	16.3076
GGGGGUGC	chr15:66084361-66084613(-)$1	252	109	117	15.8461
GGGGCGGC	chr6:53212663-53212921(-)$1	258	24	32	16.3076
GGGCCUGC	chr22:50041187-50041453(-)$1	266	155	163	15.3076
GCGGCUGC	chr21:38445872-38446111(+)$1	239	207	215	15.4615
CGGGCUGC	chr16:89042577-89042883(-)$1	306	77	85	15.4615
GGGGGUGC	chr16:2867898-2868136(+)$1	238	75	83	15.8461
GGGGCAGC	chr19:798044-798302(+)$1	258	215	223	16.3076
GGGGCAGC	chr19:1225819-1226091(+)$1	272	120	128	16.3076
GGGGCGGC	chr1:87380308-87380573(+)$1	265	180	188	16.3076
GGGGCUGC	chr16:68156399-68156683(+)$1	284	36	44	19.7692
GGGGCCGC	chr16:88877908-88878166(-)$1	258	185	193	16.3076
GGGGGUGC	chr15:29403124-29403394(+)$1	270	111	119	15.8461
GGGGCUCC	chr7:99691322-99691531(-)$1	209	64	72	15.1538
GGGGUUGC	chr17:56405622-56405911(-)$1	289	14	22	15.5384
GGGGCUGC	chr7:100172720-100172951(-)$1	231	68	76	19.7692
GGGGCUGU	chr16:1413707-1413996(-)$1	289	252	260	15.6923
GGGGCUGC	chr8:126010821-126011055(+)$1	234	162	170	19.7692
GGGGCUGG	chr8:142432648-142432905(+)$1	257	33	41	15.9999
GGGGCAGC	chr8:74658593-74658865(-)$1	272	18	26	16.3076
GCGGCUGC	chr3:49058432-49058684(-)$1	252	107	115	15.4615
GGGGGUGC	chr6:31697660-31697900(-)$1	240	119	127	15.8461
GCGGCUGC	chr7:1474216-1474488(-)$1	272	134	142	15.4615
GUGGCUGC	chr2:131850811-131851059(-)$1	248	39	47	15.3846
GGGGCUGU	chr6:2971519-2971765(-)$1	246	179	187	15.6923
GGAGCUGC	chr13:114163580-114163828(+)$1	248	78	86	15.2307
GGGUCUGC	chr4:152020694-152020933(+)$1	239	207	215	15.1538
CGGGCUGC	chr17:7154776-7155060(-)$1	284	230	238	15.4615
GUGGCUGC	chr6:109703054-109703324(-)$1	270	137	145	15.3846
GGGGCUGA	chr2:27249713-27249979(+)$1	266	50	58	15.6923
ggagcugc	chr1:116915775-116916028(+)$1	253	90	98	15.2307
GGGGCUGG	chr19:2270080-2270423(+)$1	343	164	172	15.9999
GGGGCUGG	chr16:85686368-85686626(+)$1	258	123	131	15.9999
GGGGCCGC	chr7:5632350-5632686(+)$1	336	183	191	16.3076
ggggcggc	chr8:131028216-131028461(-)$1	245	90	98	16.3076
GGGCCUGC	chr14:19889646-19889915(-)$1	269	47	55	15.3076
GGGGCUAC	chr4:717847-718127(+)$1	280	201	209	15.0769
GGGGUUGC	chr7:25988555-25988797(-)$1	242	174	182	15.5384
GGAGCUGC	chr15:52121799-52122096(+)$1	297	90	98	15.2307
cgggcUGC	chr19:1418446-1418722(+)$1	276	123	131	15.4615
GGGGCUGC	chr22:21996524-21996843(+)$1	319	122	130	19.7692
GGGGCUGC	chr2:64068073-64068368(+)$1	295	37	45	19.7692
ggggCUGC	chr7:106809948-106810230(+)$1	282	28	36	19.7692
UGGGCUGC	chr14:21484856-21485154(-)$1	298	93	101	15.3846
GGGGCUGG	chr7:1477943-1478216(-)$1	273	35	43	15.9999
GGGGCUCC	chr17:79668825-79669073(+)$1	248	187	195	15.1538
GAGGCUGC	chr8:101963263-101963509(-)$1	246	59	67	15.3076
GGGGCCGC	chr7:130791030-130791269(-)$1	239	143	151	16.3076
GGGGCUGG	chr3:184080111-184080339(+)$1	228	53	61	15.9999
AGGGCUGC	chr22:42298050-42298263(+)$1	213	138	146	15.3076
GGGGCGGC	chrX:152956439-152956735(+)$1	296	110	118	16.3076
GGGGCUGG	chr19:45600308-45600560(+)$1	252	100	108	15.9999
GGggcggc	chr16:72991598-72991832(-)$1	234	98	106	16.3076
GGGGCAGC	chr12:57504873-57505148(-)$1	275	3	11	16.3076
GGGCCUGC	chrX:151127103-151127400(-)$1	297	183	191	15.3076
GGGGCUGA	chr22:19702947-19703198(+)$1	251	89	97	15.6923
GGGGCCGC	chr11:567533-567793(-)$1	260	110	118	16.3076
GGGGCUGC	chr7:100172859-100173076(-)$1	217	193	201	19.7692
GGGGCUGC	chr19:18547579-18547850(-)$1	271	224	232	19.7692
GGGGCUGC	chr22:19972506-19972734(-)$1	228	125	133	19.7692

#otherMatches

#Struct PSSM
mmmccc]d	chr6:15248992-15249316(+)$1	324	104	112	19.7692
cccccc]c	chr19:5690652-5690898(+)$1	246	202	210	16.3076
BCCC{CCC	chr2:172379302-172379671(+)$1	369	175	183	15.8461
]dddd]ee	chr19:1627608-1627863(-)$1	255	140	148	15.3846
!!ffffff	chr22:20111804-20112085(+)$1	281	212	220	15.8461
CCC{EEEE	chr22:23522985-23523231(+)$1	246	62	70	16.3076
::======	chr15:66084361-66084613(-)$1	252	109	117	15.8461
f"""a[cc	chr6:53212663-53212921(-)$1	258	24	32	16.3076
ggg:eeee	chr22:50041187-50041453(-)$1	266	155	163	15.3076
mmbb22==	chr21:38445872-38446111(+)$1	239	207	215	15.4615
[eeeeemm	chr16:89042577-89042883(-)$1	306	77	85	15.4615
bb]fffff	chr16:2867898-2868136(+)$1	238	75	83	15.8461
ggggggg]	chr19:798044-798302(+)$1	258	215	223	16.3076
HHHHH{CC	chr19:1225819-1226091(+)$1	272	120	128	16.3076
a]ccc]bb	chr1:87380308-87380573(+)$1	265	180	188	16.3076
iiiiiiii	chr16:68156399-68156683(+)$1	284	36	44	19.7692
mccc]ccc	chr16:88877908-88878166(-)$1	258	185	193	16.3076
dd"""fff	chr15:29403124-29403394(+)$1	270	111	119	15.8461
=======!	chr7:99691322-99691531(-)$1	209	64	72	15.1538
!annnnna	chr17:56405622-56405911(-)$1	289	14	22	15.5384
JJJJJJJ:	chr7:100172720-100172951(-)$1	231	68	76	19.7692
hhhhhnnn	chr16:1413707-1413996(-)$1	289	252	260	15.6923
b[dddd[b	chr8:126010821-126011055(+)$1	234	162	170	19.7692
iiiiii22	chr8:142432648-142432905(+)$1	257	33	41	15.9999
EEEEEKKD	chr8:74658593-74658865(-)$1	272	18	26	16.3076
ee]cccee	chr3:49058432-49058684(-)$1	252	107	115	15.4615
dd:ccc[c	chr6:31697660-31697900(-)$1	240	119	127	15.8461
hh[bbmmm	chr7:1474216-1474488(-)$1	272	134	142	15.4615
bb]dddda	chr2:131850811-131851059(-)$1	248	39	47	15.3846
hhhhhhhh	chr6:2971519-2971765(-)$1	246	179	187	15.6923
]eeeee22	chr13:114163580-114163828(+)$1	248	78	86	15.2307
HHHHHCCC	chr4:152020694-152020933(+)$1	239	207	215	15.1538
:GGGGGGG	chr17:7154776-7155060(-)$1	284	230	238	15.4615
iiiccc]a	chr6:109703054-109703324(-)$1	270	137	145	15.3846
{FFFFFF{	chr2:27249713-27249979(+)$1	266	50	58	15.6923
GG{EEEEE	chr1:116915775-116916028(+)$1	253	90	98	15.2307
mggggggg	chr19:2270080-2270423(+)$1	343	164	172	15.9999
:dddd[hh	chr16:85686368-85686626(+)$1	258	123	131	15.9999
hhhhhhhh	chr7:5632350-5632686(+)$1	336	183	191	16.3076
d[ffffff	chr8:131028216-131028461(-)$1	245	90	98	16.3076
hhhhh]ff	chr14:19889646-19889915(-)$1	269	47	55	15.3076
ffffffqq	chr4:717847-718127(+)$1	280	201	209	15.0769
ddd[bb[b	chr7:25988555-25988797(-)$1	242	174	182	15.5384
qbb]eeee	chr15:52121799-52122096(+)$1	297	90	98	15.2307
ooooeeee	chr19:1418446-1418722(+)$1	276	123	131	15.4615
DDdddd[b	chr22:21996524-21996843(+)$1	319	122	130	19.7692
))))bb[d	chr2:64068073-64068368(+)$1	295	37	45	19.7692
{CCCKKEE	chr7:106809948-106810230(+)$1	282	28	36	19.7692
oooooocc	chr14:21484856-21485154(-)$1	298	93	101	15.3846
eeeea[cc	chr7:1477943-1478216(-)$1	273	35	43	15.9999
"""bbppp	chr17:79668825-79669073(+)$1	248	187	195	15.1538
22dddd]c	chr8:101963263-101963509(-)$1	246	59	67	15.3076
!!ccc[bb	chr7:130791030-130791269(-)$1	239	143	151	16.3076
KBBEEEEE	chr3:184080111-184080339(+)$1	228	53	61	15.9999
[ffffffm	chr22:42298050-42298263(+)$1	213	138	146	15.3076
qqqqqddd	chrX:152956439-152956735(+)$1	296	110	118	16.3076
fff]bb::	chr19:45600308-45600560(+)$1	252	100	108	15.9999
JJJKKBBF	chr16:72991598-72991832(-)$1	234	98	106	16.3076
mmmbb::h	chr12:57504873-57505148(-)$1	275	3	11	16.3076
gggggg""	chrX:151127103-151127400(-)$1	297	183	191	15.3076
HHHHHHHM	chr22:19702947-19703198(+)$1	251	89	97	15.6923
ddccc[cc	chr11:567533-567793(-)$1	260	110	118	16.3076
eeee22a]	chr7:100172859-100173076(-)$1	217	193	201	19.7692
========	chr19:18547579-18547850(-)$1	271	224	232	19.7692
::HHHHHH	chr22:19972506-19972734(-)$1	228	125	133	19.7692

#DB
...))).)	chr6:15248992-15249316(+)$1	1	104	112	19.7692
)))))).)	chr19:5690652-5690898(+)$1	1	202	210	16.3076
((((.(((	chr2:172379302-172379671(+)$1	1	175	183	15.8461
.)))).))	chr19:1627608-1627863(-)$1	1	140	148	15.3846
..((((((	chr22:20111804-20112085(+)$1	1	212	220	15.8461
(((.((((	chr22:23522985-23523231(+)$1	1	62	70	16.3076
..((((((	chr15:66084361-66084613(-)$1	1	109	117	15.8461
(...(.((	chr6:53212663-53212921(-)$1	1	24	32	16.3076
))).((((	chr22:50041187-50041453(-)$1	1	155	163	15.3076
..))..))	chr21:38445872-38446111(+)$1	1	207	215	15.4615
.(((((..	chr16:89042577-89042883(-)$1	1	77	85	15.4615
)).)))))	chr16:2867898-2868136(+)$1	1	75	83	15.8461
))))))).	chr19:798044-798302(+)$1	1	215	223	16.3076
(((((.((	chr19:1225819-1226091(+)$1	1	120	128	16.3076
).))).))	chr1:87380308-87380573(+)$1	1	180	188	16.3076
))))))))	chr16:68156399-68156683(+)$1	1	36	44	19.7692
.))).)))	chr16:88877908-88878166(-)$1	1	185	193	16.3076
((...(((	chr15:29403124-29403394(+)$1	1	111	119	15.8461
(((((((.	chr7:99691322-99691531(-)$1	1	64	72	15.1538
.(.....)	chr17:56405622-56405911(-)$1	1	14	22	15.5384
(((((((.	chr7:100172720-100172951(-)$1	1	68	76	19.7692
(((((...	chr16:1413707-1413996(-)$1	1	252	260	15.6923
(.((((.(	chr8:126010821-126011055(+)$1	1	162	170	19.7692
))))))..	chr8:142432648-142432905(+)$1	1	33	41	15.9999
(((((..(	chr8:74658593-74658865(-)$1	1	18	26	16.3076
)).)))))	chr3:49058432-49058684(-)$1	1	107	115	15.4615
)).(((.(	chr6:31697660-31697900(-)$1	1	119	127	15.8461
((.((...	chr7:1474216-1474488(-)$1	1	134	142	15.4615
)).)))))	chr2:131850811-131851059(-)$1	1	39	47	15.3846
((((((((	chr6:2971519-2971765(-)$1	1	179	187	15.6923
.)))))..	chr13:114163580-114163828(+)$1	1	78	86	15.2307
))))))))	chr4:152020694-152020933(+)$1	1	207	215	15.1538
.)))))))	chr17:7154776-7155060(-)$1	1	230	238	15.4615
)))))).)	chr6:109703054-109703324(-)$1	1	137	145	15.3846
.((((((.	chr2:27249713-27249979(+)$1	1	50	58	15.6923
((.(((((	chr1:116915775-116916028(+)$1	1	90	98	15.2307
.)))))))	chr19:2270080-2270423(+)$1	1	164	172	15.9999
.((((.((	chr16:85686368-85686626(+)$1	1	123	131	15.9999
((((((((	chr7:5632350-5632686(+)$1	1	183	191	16.3076
(.((((((	chr8:131028216-131028461(-)$1	1	90	98	16.3076
))))).))	chr14:19889646-19889915(-)$1	1	47	55	15.3076
((((((..	chr4:717847-718127(+)$1	1	201	209	15.0769
(((.((.(	chr7:25988555-25988797(-)$1	1	174	182	15.5384
.)).))))	chr15:52121799-52122096(+)$1	1	90	98	15.2307
....))))	chr19:1418446-1418722(+)$1	1	123	131	15.4615
((((((.(	chr22:21996524-21996843(+)$1	1	122	130	19.7692
....((.(	chr2:64068073-64068368(+)$1	1	37	45	19.7692
.(((..((	chr7:106809948-106810230(+)$1	1	28	36	19.7692
......))	chr14:21484856-21485154(-)$1	1	93	101	15.3846
(((((.((	chr7:1477943-1478216(-)$1	1	35	43	15.9999
...((...	chr17:79668825-79669073(+)$1	1	187	195	15.1538
..)))).)	chr8:101963263-101963509(-)$1	1	59	67	15.3076
..(((.((	chr7:130791030-130791269(-)$1	1	143	151	16.3076
.(((((((	chr3:184080111-184080339(+)$1	1	53	61	15.9999
.((((((.	chr22:42298050-42298263(+)$1	1	138	146	15.3076
.....)))	chrX:152956439-152956735(+)$1	1	110	118	16.3076
))).))..	chr19:45600308-45600560(+)$1	1	100	108	15.9999
(((..(((	chr16:72991598-72991832(-)$1	1	98	106	16.3076
...))..(	chr12:57504873-57505148(-)$1	1	3	11	16.3076
((((((..	chrX:151127103-151127400(-)$1	1	183	191	15.3076
(((((((.	chr22:19702947-19703198(+)$1	1	89	97	15.6923
))(((.((	chr11:567533-567793(-)$1	1	110	118	16.3076
))))..).	chr7:100172859-100173076(-)$1	1	193	201	19.7692
((((((((	chr19:18547579-18547850(-)$1	1	224	232	19.7692
..((((((	chr22:19972506-19972734(-)$1	1	125	133	19.7692

#PSSM
G : 0.83	g : 0.07	U : 0.03	C : 0.03	c : 0.01	A : 0.01	
G : 0.81	g : 0.09	C : 0.04	U : 0.03	A : 0.01	
G : 0.86	g : 0.09	A : 0.03	a : 0.01	
G : 0.83	g : 0.10	C : 0.04	U : 0.01	
C : 0.78	c : 0.09	G : 0.09	U : 0.03	
U : 0.73	A : 0.07	C : 0.06	G : 0.04	u : 0.03	g : 0.03	c : 0.01	
G : 0.87	g : 0.07	C : 0.03	A : 0.01	
C : 0.76	G : 0.09	c : 0.07	U : 0.03	A : 0.03	

#score	1064.3076923076908
#seq	65
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_UTR_m1_run2.nuc.txt

#NT
CCUGGG	chr19:4657709-4658021(-)$1	312	120	126	17.9999
CCUGGG	chr1:1375898-1376157(+)$1	259	96	102	17.9999
CCUGGG	chr12:57489832-57490103(-)$1	271	254	260	17.9999
CCUGGG	chr11:490927-491263(+)$1	336	134	140	17.9999
CCUGGG	chr12:120898386-120898670(+)$1	284	24	30	17.9999
CCUGGG	chr21:46684868-46685140(-)$1	272	168	174	17.9999
CCUGGG	chr11:46698745-46699049(-)$1	304	68	74	17.9999
CCUGGG	chr12:58114793-58115054(+)$1	261	51	57	17.9999
CCUGGG	chr17:79674284-79674580(+)$1	296	17	23	17.9999
CCUGGG	chr22:41972857-41973155(-)$1	298	176	182	17.9999
CCUGGG	chr10:103867460-103867802(-)$1	342	129	135	17.9999
CCUGGG	chr16:88718677-88718906(-)$1	229	58	64	17.9999
ccuggg	chr19:4838591-4838860(-)$1	269	222	228	17.9999
CCUGGG	chr4:120219190-120219423(-)$1	233	110	116	17.9999
CCUGGG	chr9:745380-745657(+)$1	277	21	27	17.9999
CCUGGG	chr17:39978805-39979056(+)$1	251	121	127	17.9999
ccuggg	chr2:228551142-228551374(-)$1	232	128	134	17.9999
CCUGGG	chr9:136628879-136629109(-)$1	230	149	155	17.9999
CCUGGG	chr22:17591864-17592148(+)$1	284	168	174	17.9999
CCUGGG	chr11:868545-868878(-)$1	333	48	54	17.9999
CCUGGG	chr16:1838774-1839057(+)$1	283	11	17	17.9999
CCUGGG	chr19:3490896-3491220(-)$1	324	283	289	17.9999
CCUGGG	chr5:149933559-149933827(+)$1	268	41	47	17.9999
CCUGGG	chr16:8875920-8876232(+)$1	312	140	146	17.9999
CCUGGG	chr22:41323066-41323387(+)$1	321	37	43	17.9999
CCUGGG	chr16:70695939-70696187(-)$1	248	46	52	17.9999
CCUGGG	chr22:50713499-50713762(-)$1	263	216	222	17.9999
ccuggg	chr16:16243551-16243827(-)$1	276	120	126	17.9999
CCUGGG	chr7:2770583-2770838(-)$1	255	226	232	17.9999
CCUGGG	chr16:29869965-29870218(-)$1	253	223	229	17.9999
ccuggg	chr8:11701156-11701417(-)$1	261	17	23	17.9999
ccuggg	chr17:19481462-19481726(+)$1	264	146	152	17.9999
CCUGGG	chr17:37075199-37075551(+)$1	352	271	277	17.9999
CCUGGG	chr16:19514582-19514857(-)$1	275	151	157	17.9999
ccuggg	chr1:9162965-9163266(-)$1	301	250	256	17.9999
CCUGGG	chr3:196729209-196729485(-)$1	276	151	157	17.9999
CCUGGG	chr7:44100508-44100784(+)$1	276	70	76	17.9999
CCUGGG	chr10:73576649-73576966(-)$1	317	153	159	17.9999
CCUGGG	chr5:180218489-180218728(-)$1	239	110	116	17.9999
CCUGGG	chr7:1586396-1586696(-)$1	300	114	120	17.9999
CCUGGG	chr19:5152160-5152429(+)$1	269	33	39	17.9999
CCUGGG	chr17:36828691-36828951(-)$1	260	177	183	17.9999
CCUGGG	chr16:23582604-23582929(+)$1	325	190	196	17.9999
CCUGGG	chr22:39826532-39826874(+)$1	342	206	212	17.9999
CCUGGG	chr2:219139402-219139657(-)$1	255	132	138	17.9999

#otherMatches

#Struct PSSM
"""bb[	chr22:38471146-38471444(+)$1	298	41	47	17.9999
ccceee	chr19:4657709-4658021(-)$1	312	120	126	17.9999
dd]eee	chr1:1375898-1376157(+)$1	259	96	102	17.9999
GGGGGG	chr12:57489832-57490103(-)$1	271	254	260	17.9999
3ggggg	chr11:490927-491263(+)$1	336	134	140	17.9999
ccpppp	chr12:120898386-120898670(+)$1	284	24	30	17.9999
ffffff	chr21:46684868-46685140(-)$1	272	168	174	17.9999
]fffff	chr11:46698745-46699049(-)$1	304	68	74	17.9999
ff!!ee	chr12:58114793-58115054(+)$1	261	51	57	17.9999
flllff	chr17:79674284-79674580(+)$1	296	17	23	17.9999
clllcc	chr22:41972857-41973155(-)$1	298	176	182	17.9999
DDDFFF	chr10:103867460-103867802(-)$1	342	129	135	17.9999
eee!!e	chr16:88718677-88718906(-)$1	229	58	64	17.9999
ddd]cc	chr19:4838591-4838860(-)$1	269	222	228	17.9999
qqqfff	chr4:120219190-120219423(-)$1	233	110	116	17.9999
ddd!!e	chr9:745380-745657(+)$1	277	21	27	17.9999
"""ccc	chr17:39978805-39979056(+)$1	251	121	127	17.9999
dddfff	chr2:228551142-228551374(-)$1	232	128	134	17.9999
:eeeee	chr9:136628879-136629109(-)$1	230	149	155	17.9999
2ddddd	chr22:17591864-17592148(+)$1	284	168	174	17.9999
ddd:a[	chr11:868545-868878(-)$1	333	48	54	17.9999
JJJJJJ	chr16:1838774-1839057(+)$1	283	11	17	17.9999
GGGGGG	chr19:3490896-3491220(-)$1	324	283	289	17.9999
lllddd	chr5:149933559-149933827(+)$1	268	41	47	17.9999
c22ccc	chr16:8875920-8876232(+)$1	312	140	146	17.9999
EEEEEL	chr22:41323066-41323387(+)$1	321	37	43	17.9999
ccc]gg	chr16:70695939-70696187(-)$1	248	46	52	17.9999
:ggggg	chr22:50713499-50713762(-)$1	263	216	222	17.9999
:::hhh	chr16:16243551-16243827(-)$1	276	120	126	17.9999
BBGGGG	chr7:2770583-2770838(-)$1	255	226	232	17.9999
gg]ddd	chr16:29869965-29870218(-)$1	253	223	229	17.9999
eeeEEE	chr8:11701156-11701417(-)$1	261	17	23	17.9999
c!!eee	chr17:19481462-19481726(+)$1	264	146	152	17.9999
ddd666	chr17:37075199-37075551(+)$1	352	271	277	17.9999
fffffe	chr16:19514582-19514857(-)$1	275	151	157	17.9999
DFFFFF	chr1:9162965-9163266(-)$1	301	250	256	17.9999
ee]fff	chr3:196729209-196729485(-)$1	276	151	157	17.9999
ffffff	chr7:44100508-44100784(+)$1	276	70	76	17.9999
iiiiii	chr10:73576649-73576966(-)$1	317	153	159	17.9999
nnnddd	chr5:180218489-180218728(-)$1	239	110	116	17.9999
IIIIII	chr7:1586396-1586696(-)$1	300	114	120	17.9999
leeeee	chr19:5152160-5152429(+)$1	269	33	39	17.9999
gggggg	chr17:36828691-36828951(-)$1	260	177	183	17.9999
b!!ggg	chr16:23582604-23582929(+)$1	325	190	196	17.9999
ffffff	chr22:39826532-39826874(+)$1	342	206	212	17.9999
qcccii	chr2:219139402-219139657(-)$1	255	132	138	17.9999

#DB
...((.	chr22:38471146-38471444(+)$1	1	41	47	17.9999
((((((	chr19:4657709-4658021(-)$1	1	120	126	17.9999
)).)))	chr1:1375898-1376157(+)$1	1	96	102	17.9999
))))))	chr12:57489832-57490103(-)$1	1	254	260	17.9999
.)))))	chr11:490927-491263(+)$1	1	134	140	17.9999
((....	chr12:120898386-120898670(+)$1	1	24	30	17.9999
))))))	chr21:46684868-46685140(-)$1	1	168	174	17.9999
.)))))	chr11:46698745-46699049(-)$1	1	68	74	17.9999
((..((	chr12:58114793-58115054(+)$1	1	51	57	17.9999
(...))	chr17:79674284-79674580(+)$1	1	17	23	17.9999
(...))	chr22:41972857-41973155(-)$1	1	176	182	17.9999
))))))	chr10:103867460-103867802(-)$1	1	129	135	17.9999
(((..(	chr16:88718677-88718906(-)$1	1	58	64	17.9999
))).))	chr19:4838591-4838860(-)$1	1	222	228	17.9999
...)))	chr4:120219190-120219423(-)$1	1	110	116	17.9999
(((..(	chr9:745380-745657(+)$1	1	21	27	17.9999
...(((	chr17:39978805-39979056(+)$1	1	121	127	17.9999
))))))	chr2:228551142-228551374(-)$1	1	128	134	17.9999
.(((((	chr9:136628879-136629109(-)$1	1	149	155	17.9999
.)))))	chr22:17591864-17592148(+)$1	1	168	174	17.9999
))).(.	chr11:868545-868878(-)$1	1	48	54	17.9999
((((((	chr16:1838774-1839057(+)$1	1	11	17	17.9999
))))))	chr19:3490896-3491220(-)$1	1	283	289	17.9999
...)))	chr5:149933559-149933827(+)$1	1	41	47	17.9999
)..)))	chr16:8875920-8876232(+)$1	1	140	146	17.9999
(((((.	chr22:41323066-41323387(+)$1	1	37	43	17.9999
))).))	chr16:70695939-70696187(-)$1	1	46	52	17.9999
.(((((	chr22:50713499-50713762(-)$1	1	216	222	17.9999
...(((	chr16:16243551-16243827(-)$1	1	120	126	17.9999
))))))	chr7:2770583-2770838(-)$1	1	226	232	17.9999
)).)))	chr16:29869965-29870218(-)$1	1	223	229	17.9999
)))(((	chr8:11701156-11701417(-)$1	1	17	23	17.9999
(..(((	chr17:19481462-19481726(+)$1	1	146	152	17.9999
)))...	chr17:37075199-37075551(+)$1	1	271	277	17.9999
)))))(	chr16:19514582-19514857(-)$1	1	151	157	17.9999
))))))	chr1:9162965-9163266(-)$1	1	250	256	17.9999
)).)))	chr3:196729209-196729485(-)$1	1	151	157	17.9999
((((((	chr7:44100508-44100784(+)$1	1	70	76	17.9999
((((((	chr10:73576649-73576966(-)$1	1	153	159	17.9999
...)))	chr5:180218489-180218728(-)$1	1	110	116	17.9999
))))))	chr7:1586396-1586696(-)$1	1	114	120	17.9999
.)))))	chr19:5152160-5152429(+)$1	1	33	39	17.9999
((((((	chr17:36828691-36828951(-)$1	1	177	183	17.9999
(..(((	chr16:23582604-23582929(+)$1	1	190	196	17.9999
))))))	chr22:39826532-39826874(+)$1	1	206	212	17.9999
.)))((	chr2:219139402-219139657(-)$1	1	132	138	17.9999

#PSSM
C : 0.86	c : 0.13	
C : 0.86	c : 0.13	
U : 0.86	u : 0.13	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	

#score	827.9999999999999
#seq	46
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_UTR_m3_run1.nuc.txt

#NT
UUUGUUUU	chr15:40954172-40954521(+)$1	349	288	296	16.3148
UUUUUUUU	chr3:180320811-180321088(+)$1	277	86	94	20.3888
UUUUGUUU	chr11:118888130-118888335(-)$1	205	62	70	16.1296
UUUUUUUU	chr15:44093811-44094112(+)$1	301	241	249	20.3888
UUUUUCUU	chr5:176335429-176335712(-)$1	283	0	8	16.9629
UUAUUUUU	chr14:71051365-71051760(-)$1	395	347	355	15.8518
UUUGUUUU	chr8:67834162-67834450(-)$1	288	89	97	16.3148
UUUUUAUU	chr16:1748709-1748976(+)$1	267	25	33	16.7777
UUUUUUUU	chr21:30442469-30442751(-)$1	282	80	88	20.3888
GUUUUUUU	chr14:24679459-24679738(-)$1	279	7	15	15.9444
UUUUUCUU	chr15:69079700-69079971(-)$1	271	73	81	16.9629
UUUUUGUU	chr15:93541627-93541881(+)$1	254	21	29	16.4999
UUUUUUUU	chr1:52179573-52179839(+)$1	266	245	253	20.3888
UUUUCUUU	chr7:105176944-105177237(+)$1	293	9	17	16.4074
UUUUUUGU	chr10:73972843-73973105(-)$1	262	222	230	15.5740
UUUUCUUU	chr9:33030337-33030541(+)$1	204	82	90	16.4074
UUUUCUUU	chr1:1328065-1328283(-)$1	218	71	79	16.4074
UCUUUUUU	chr4:71863681-71863988(+)$1	307	50	58	16.0370
UUGUUUUU	chr17:46051665-46051877(+)$1	212	78	86	15.7592
CUUUUUUU	chr9:114133952-114134207(-)$1	255	25	33	16.1296
UUAUUUUU	chr8:106431260-106431573(+)$1	313	8	16	15.8518
UUUGUUUU	chr17:7481044-7481275(+)$1	231	83	91	16.3148
UUUUUCUU	chr14:102547914-102548148(-)$1	234	169	177	16.9629
CUUUUUUU	chr6:136600878-136601114(-)$1	236	74	82	16.1296
UGUUUUUU	chr3:99879176-99879447(+)$1	271	106	114	16.1296
UUUUUCUU	chr12:4662132-4662408(+)$1	276	241	249	16.9629
UUUUUAUU	chr3:142741237-142741565(+)$1	328	10	18	16.7777
UAUUUUUU	chr19:34942805-34943057(+)$1	252	65	73	16.2222
UAUUUUUU	chr14:102552276-102552483(-)$1	207	6	14	16.2222
uuuuuuuu	chr17:2238708-2238963(-)$1	255	204	212	20.3888
UUUUCUUU	chr8:106456404-106456669(+)$1	265	70	78	16.4074
UUUUUUUU	chr9:123232299-123232562(-)$1	263	41	49	20.3888
UUUUUUUU	chr5:137496606-137496841(-)$1	235	73	81	20.3888
uuuuuuuu	chr14:102550075-102550344(-)$1	269	257	265	20.3888
UUUUUCUU	chr1:24975242-24975474(+)$1	232	79	87	16.9629
UUUUUAUU	chr3:56647574-56647868(+)$1	294	0	8	16.7777
UUUUAUUU	chr14:31588842-31589161(-)$1	319	75	83	16.2222
UUUGUUUU	chr5:137903049-137903311(-)$1	262	47	55	16.3148
UUUUUUUU	chr8:124383382-124383605(-)$1	223	15	23	20.3888
UUUUUUUU	chr5:140081499-140081768(+)$1	269	26	34	20.3888
UUUUUUUU	chr8:99054786-99055060(-)$1	274	212	220	20.3888
UUUUUUUU	chr3:11850870-11851201(-)$1	331	26	34	20.3888
UGUUUUUU	chr5:159437405-159437659(+)$1	254	2	10	16.1296
UUUAUUUU	chr19:5645267-5645513(+)$1	246	68	76	16.1296
AUUUUUUU	chr11:77330634-77330841(-)$1	207	87	95	15.9444
UUUUUAUU	chr6:34730270-34730528(+)$1	258	87	95	16.7777
uuuuuuuu	chr9:131456932-131457216(+)$1	284	81	89	20.3888
UUUAUUUU	chrX:153998975-153999249(+)$1	274	192	200	16.1296
UUUUUUUU	chr5:68467150-68467379(+)$1	229	146	154	20.3888
UUUUUUUU	chr1:25568975-25569293(-)$1	318	33	41	20.3888
UUUUUCUU	chr7:32528761-32529059(-)$1	298	9	17	16.9629
uauuuuuu	chr3:142756848-142757078(+)$1	230	217	225	16.2222
CUUUUUUU	chr1:43132919-43133193(+)$1	274	89	97	16.1296

#otherMatches

#Struct PSSM
qqqqqqqq	chr10:133761010-133761295(+)$1	285	5	13	16.2222
3eeeee::	chr15:40954172-40954521(+)$1	349	288	296	16.3148
oooooobb	chr3:180320811-180321088(+)$1	277	86	94	20.3888
iiiiiiii	chr11:118888130-118888335(-)$1	205	62	70	16.1296
mmmccc]e	chr15:44093811-44094112(+)$1	301	241	249	20.3888
::iiiiii	chr5:176335429-176335712(-)$1	283	0	8	16.9629
IIIII}DD	chr14:71051365-71051760(-)$1	395	347	355	15.8518
ccc[dddd	chr8:67834162-67834450(-)$1	288	89	97	16.3148
::::::::	chr16:1748709-1748976(+)$1	267	25	33	16.7777
ggggg###	chr21:30442469-30442751(-)$1	282	80	88	20.3888
dppppppp	chr14:24679459-24679738(-)$1	279	7	15	15.9444
h$$$$$ee	chr15:69079700-69079971(-)$1	271	73	81	16.9629
hhhhh444	chr15:93541627-93541881(+)$1	254	21	29	16.4999
^^^^^^^^	chr1:52179573-52179839(+)$1	266	245	253	20.3888
EEEEEEEE	chr7:105176944-105177237(+)$1	293	9	17	16.4074
========	chr10:73972843-73973105(-)$1	262	222	230	15.5740
qqqqqqqq	chr9:33030337-33030541(+)$1	204	82	90	16.4074
333bb:::	chr1:1328065-1328283(-)$1	218	71	79	16.4074
PPPPPEEE	chr4:71863681-71863988(+)$1	307	50	58	16.0370
::::::::	chr17:46051665-46051877(+)$1	212	78	86	15.7592
HHHHHLLL	chr9:114133952-114134207(-)$1	255	25	33	16.1296
GGGGLLLC	chr8:106431260-106431573(+)$1	313	8	16	15.8518
DD{IIIII	chr17:7481044-7481275(+)$1	231	83	91	16.3148
qqqqqqqq	chr14:102547914-102548148(-)$1	234	169	177	16.9629
bggggggg	chr6:136600878-136601114(-)$1	236	74	82	16.1296
{BBMMMME	chr3:99879176-99879447(+)$1	271	106	114	16.1296
:FFFFFFY	chr12:4662132-4662408(+)$1	276	241	249	16.9629
HHHHH:::	chr3:142741237-142741565(+)$1	328	10	18	16.7777
:dddd[gg	chr19:34942805-34943057(+)$1	252	65	73	16.2222
ffnnnnnf	chr14:102552276-102552483(-)$1	207	6	14	16.2222
>>>>>>>>	chr17:2238708-2238963(-)$1	255	204	212	20.3888
2hhhhhhh	chr8:106456404-106456669(+)$1	265	70	78	16.4074
!!bb!!hh	chr9:123232299-123232562(-)$1	263	41	49	20.3888
ffffff!!	chr5:137496606-137496841(-)$1	235	73	81	20.3888
F:::::::	chr14:102550075-102550344(-)$1	269	257	265	20.3888
::::::GG	chr1:24975242-24975474(+)$1	232	79	87	16.9629
ffffff[b	chr3:56647574-56647868(+)$1	294	0	8	16.7777
=======c	chr14:31588842-31589161(-)$1	319	75	83	16.2222
JJJJJJJJ	chr5:137903049-137903311(-)$1	262	47	55	16.3148
e[ffffff	chr8:124383382-124383605(-)$1	223	15	23	20.3888
JJJJJ:::	chr5:140081499-140081768(+)$1	269	26	34	20.3888
qqqqqqdd	chr8:99054786-99055060(-)$1	274	212	220	20.3888
D{HHHHHH	chr3:11850870-11851201(-)$1	331	26	34	20.3888
CKKGGGGG	chr5:159437405-159437659(+)$1	254	2	10	16.1296
gggggggl	chr19:5645267-5645513(+)$1	246	68	76	16.1296
00000000	chr11:77330634-77330841(-)$1	207	87	95	15.9444
ffff####	chr6:34730270-34730528(+)$1	258	87	95	16.7777
::::::::	chr9:131456932-131457216(+)$1	284	81	89	20.3888
iiiiuuuu	chrX:153998975-153999249(+)$1	274	192	200	16.1296
4444ccc]	chr5:68467150-68467379(+)$1	229	146	154	20.3888
[ggggggg	chr1:25568975-25569293(-)$1	318	33	41	20.3888
HHHHH:ee	chr7:32528761-32529059(-)$1	298	9	17	16.9629
::::::::	chr3:142756848-142757078(+)$1	230	217	225	16.2222
=======d	chr1:43132919-43133193(+)$1	274	89	97	16.1296

#DB
........	chr10:133761010-133761295(+)$1	1	5	13	16.2222
.)))))..	chr15:40954172-40954521(+)$1	1	288	296	16.3148
......))	chr3:180320811-180321088(+)$1	1	86	94	20.3888
((((((((	chr11:118888130-118888335(-)$1	1	62	70	16.1296
...))).)	chr15:44093811-44094112(+)$1	1	241	249	20.3888
..((((((	chr5:176335429-176335712(-)$1	1	0	8	16.9629
))))).))	chr14:71051365-71051760(-)$1	1	347	355	15.8518
(((.((((	chr8:67834162-67834450(-)$1	1	89	97	16.3148
........	chr16:1748709-1748976(+)$1	1	25	33	16.7777
(((((...	chr21:30442469-30442751(-)$1	1	80	88	20.3888
(.......	chr14:24679459-24679738(-)$1	1	7	15	15.9444
(.....((	chr15:69079700-69079971(-)$1	1	73	81	16.9629
)))))...	chr15:93541627-93541881(+)$1	1	21	29	16.4999
........	chr1:52179573-52179839(+)$1	1	245	253	20.3888
((((((((	chr7:105176944-105177237(+)$1	1	9	17	16.4074
))))))))	chr10:73972843-73973105(-)$1	1	222	230	15.5740
........	chr9:33030337-33030541(+)$1	1	82	90	16.4074
...))...	chr1:1328065-1328283(-)$1	1	71	79	16.4074
.....(((	chr4:71863681-71863988(+)$1	1	50	58	16.0370
........	chr17:46051665-46051877(+)$1	1	78	86	15.7592
(((((...	chr9:114133952-114134207(-)$1	1	25	33	16.1296
((((...(	chr8:106431260-106431573(+)$1	1	8	16	15.8518
((.(((((	chr17:7481044-7481275(+)$1	1	83	91	16.3148
........	chr14:102547914-102548148(-)$1	1	169	177	16.9629
((((((((	chr6:136600878-136601114(-)$1	1	74	82	16.1296
.((....(	chr3:99879176-99879447(+)$1	1	106	114	16.1296
.)))))).	chr12:4662132-4662408(+)$1	1	241	249	16.9629
(((((...	chr3:142741237-142741565(+)$1	1	10	18	16.7777
.((((.((	chr19:34942805-34943057(+)$1	1	65	73	16.2222
((.....)	chr14:102552276-102552483(-)$1	1	6	14	16.2222
........	chr17:2238708-2238963(-)$1	1	204	212	20.3888
.)))))))	chr8:106456404-106456669(+)$1	1	70	78	16.4074
..((..((	chr9:123232299-123232562(-)$1	1	41	49	20.3888
((((((..	chr5:137496606-137496841(-)$1	1	73	81	20.3888
).......	chr14:102550075-102550344(-)$1	1	257	265	20.3888
......((	chr1:24975242-24975474(+)$1	1	79	87	16.9629
((((((.(	chr3:56647574-56647868(+)$1	1	0	8	16.7777
))))))))	chr14:31588842-31589161(-)$1	1	75	83	16.2222
((((((((	chr5:137903049-137903311(-)$1	1	47	55	16.3148
(.((((((	chr8:124383382-124383605(-)$1	1	15	23	20.3888
(((((...	chr5:140081499-140081768(+)$1	1	26	34	20.3888
......))	chr8:99054786-99055060(-)$1	1	212	220	20.3888
(.((((((	chr3:11850870-11851201(-)$1	1	26	34	20.3888
(..(((((	chr5:159437405-159437659(+)$1	1	2	10	16.1296
(((((((.	chr19:5645267-5645513(+)$1	1	68	76	16.1296
........	chr11:77330634-77330841(-)$1	1	87	95	15.9444
((((....	chr6:34730270-34730528(+)$1	1	87	95	16.7777
........	chr9:131456932-131457216(+)$1	1	81	89	20.3888
((((....	chrX:153998975-153999249(+)$1	1	192	200	16.1296
....))).	chr5:68467150-68467379(+)$1	1	146	154	20.3888
.(((((((	chr1:25568975-25569293(-)$1	1	33	41	20.3888
(((((.((	chr7:32528761-32529059(-)$1	1	9	17	16.9629
........	chr3:142756848-142757078(+)$1	1	217	225	16.2222
))))))))	chr1:43132919-43133193(+)$1	1	89	97	16.1296

#PSSM
U : 0.83	u : 0.07	C : 0.05	G : 0.01	A : 0.01	
U : 0.83	u : 0.05	G : 0.03	A : 0.03	C : 0.01	a : 0.01	
U : 0.87	u : 0.07	A : 0.03	G : 0.01	
U : 0.81	G : 0.07	u : 0.07	A : 0.03	
U : 0.79	C : 0.07	u : 0.07	A : 0.03	G : 0.01	
U : 0.72	C : 0.11	A : 0.07	u : 0.07	G : 0.01	
U : 0.90	u : 0.07	G : 0.01	
U : 0.92	u : 0.07	

#score	943.2222222222211
#seq	54
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_UTR_m1_run1.nuc.txt

#NT
UGCUGGG	chr17:79879816-79880075(-)$1	259	141	148	16.9589
UGUUGGG	chr12:31478523-31478836(-)$1	313	22	29	13.1232
ggcuggg	chr3:33481531-33481868(-)$1	337	252	259	13.8082
CGCUGGG	chr11:404640-404960(+)$1	320	42	49	13.2602
UGCAGGG	chr2:97525513-97525824(-)$1	311	1	8	12.5068
UGCUGGU	chr15:80214902-80215226(-)$1	324	96	103	12.8493
UGCUGUG	chr11:66130404-66130759(-)$1	355	18	25	12.7808
AGCUGGG	chr16:89663178-89663450(+)$1	272	119	126	13.1917
UGCUGUG	chr16:89725509-89725826(+)$1	317	140	147	12.7808
GGCUGGG	chr22:19957649-19957940(-)$1	291	84	91	13.8082
UGCUGGG	chr1:1336739-1337076(+)$1	337	271	278	16.9589
ugcuggg	chrX:153276550-153276815(-)$1	265	150	157	16.9589
uguuggg	chr17:76794067-76794362(-)$1	295	5	12	13.1232
UGCUGGU	chr9:140260656-140261004(-)$1	348	2	9	12.8493
GGCUggg	chr15:65477486-65477771(-)$1	285	34	41	13.8082
UGCUGUG	chr12:112590603-112590925(+)$1	322	145	152	12.7808
UGCUGGG	chr16:90015562-90015957(+)$1	395	238	245	16.9589
UGCUGGG	chr8:22108190-22108551(+)$1	361	54	61	16.9589
ggcuggg	chr8:30669820-30670092(-)$1	272	118	125	13.8082
UGCUGUG	chr6:111136359-111136639(-)$1	280	117	124	12.7808
GGCUGGG	chr22:20099624-20099905(-)$1	281	181	188	13.8082
UUCUGGG	chr8:144678390-144678706(-)$1	316	111	118	13.1232
GGCUGGG	chr17:40853795-40854061(-)$1	266	123	130	13.8082
UCCUGGG	chr12:133404818-133405110(-)$1	292	232	239	13.2602
UGAUGGG	chr21:47721224-47721481(-)$1	257	39	46	12.8493
UGCUGUG	chr3:196074511-196074824(-)$1	313	38	45	12.7808
UGCUGGC	chr22:20099793-20100027(-)$1	234	11	18	12.7808
CGCUGGG	chr6:31730659-31730979(+)$1	320	236	243	13.2602
UGCUGGG	chr20:1165127-1165394(-)$1	267	228	235	16.9589
UGCUGUG	chr20:62338432-62338681(-)$1	249	29	36	12.7808
UCCUGGG	chr19:59084219-59084553(-)$1	334	49	56	13.2602
UGCAGGG	chr12:133345649-133346006(-)$1	357	28	35	12.5068
UGUUGGG	chr11:8707250-8707472(+)$1	222	72	79	13.1232
UUCUGGG	chr9:127118426-127118779(-)$1	353	54	61	13.1232
UGCUGGG	chr19:7978265-7978568(+)$1	303	293	300	16.9589
UUCUGGG	chr2:61763613-61763935(-)$1	322	291	298	13.1232
GGCUGGG	chr1:228270370-228270687(+)$1	317	151	158	13.8082
UGUUGGG	chr16:31044904-31045244(+)$1	340	109	116	13.1232
UGCUGGG	chr17:80871474-80871735(+)$1	261	184	191	16.9589
UGCUGGG	chr12:109124803-109125153(-)$1	350	79	86	16.9589
UCCUGGG	chr19:55558632-55558918(+)$1	286	50	57	13.2602
UGCUGGU	chr1:1189987-1190276(-)$1	289	142	149	12.8493
UGCUGGU	chr11:18425140-18425399(+)$1	259	125	132	12.8493
UGCUGGG	chr19:575082-575340(+)$1	258	143	150	16.9589
UGCUUGG	chr16:89663061-89663318(+)$1	257	31	38	12.0958
UGCUGGC	chr19:49605769-49606059(+)$1	290	64	71	12.7808
UCCUGGG	chr16:1413478-1413809(-)$1	331	61	68	13.2602
UGCUGGG	chr5:139038984-139039314(+)$1	330	105	112	16.9589
UGCUGGG	chr7:2147124-2147444(-)$1	320	221	228	16.9589
UGUUggg	chr20:57467325-57467596(+)$1	271	67	74	13.1232
UCCUGGG	chr17:40265248-40265572(-)$1	324	115	122	13.2602
UGCUGGA	chr12:111180378-111180616(-)$1	238	150	157	12.7123
UGCUGGG	chr16:725962-726262(+)$1	300	271	278	16.9589
UGAUGGG	chr8:144676557-144676801(-)$1	244	47	54	12.8493
UUCUGGG	chr20:62331326-62331602(-)$1	276	75	82	13.1232
UGGUGGG	chr15:34671306-34671540(-)$1	234	66	73	12.9178
UGGUGGG	chr1:228270954-228271281(+)$1	327	61	68	12.9178
UGCUGGG	chr17:80407351-80407646(-)$1	295	145	152	16.9589
UCCUGGG	chr22:39916696-39916954(+)$1	258	91	98	13.2602
UGCAGGG	chr12:30907138-30907450(-)$1	312	11	18	12.5068
AGCUGGG	chr6:36457025-36457340(+)$1	315	243	250	13.1917
CGCUGGG	chr9:131017192-131017515(+)$1	323	65	72	13.2602
GGCUGGG	chr22:19431304-19431642(-)$1	338	130	137	13.8082
UGCAGGG	chr1:171560913-171561203(+)$1	290	87	94	12.5068
UCCUGGG	chr15:91415913-91416220(+)$1	307	207	214	13.2602
GGCUGGG	chr1:27929968-27930300(-)$1	332	99	106	13.8082
UUCUGGG	chr16:2820956-2821282(+)$1	326	117	124	13.1232
UGUUGGG	chr5:179248427-179248714(+)$1	287	17	24	13.1232
UGGUGGG	chr15:64980434-64980749(-)$1	315	194	201	12.9178
GGCUGGG	chr4:763962-764209(-)$1	247	114	121	13.8082
UGCUGGA	chr12:51566448-51566855(-)$1	407	32	39	12.7123
ggcuggg	chr11:95522572-95522943(-)$1	371	100	107	13.8082

#otherMatches

#Struct PSSM
d333eee	chr3:49049827-49050107(+)$1	280	224	231	12.7808
HHHHHHH	chr17:79879816-79880075(-)$1	259	141	148	16.9589
CCC{JJJ	chr12:31478523-31478836(-)$1	313	22	29	13.1232
[eeeee[	chr3:33481531-33481868(-)$1	337	252	259	13.8082
nnnniii	chr11:404640-404960(+)$1	320	42	49	13.2602
:hhhhhh	chr2:97525513-97525824(-)$1	311	1	8	12.5068
qhhhhhh	chr15:80214902-80215226(-)$1	324	96	103	12.8493
sssseee	chr11:66130404-66130759(-)$1	355	18	25	12.7808
::ccccc	chr16:89663178-89663450(+)$1	272	119	126	13.1917
EE}CCC}	chr16:89725509-89725826(+)$1	317	140	147	12.7808
KKEEEEE	chr22:19957649-19957940(-)$1	291	84	91	13.8082
%bboooo	chr1:1336739-1337076(+)$1	337	271	278	16.9589
GGGGGGG	chrX:153276550-153276815(-)$1	265	150	157	16.9589
:::::::	chr17:76794067-76794362(-)$1	295	5	12	13.1232
FFFFF{E	chr9:140260656-140261004(-)$1	348	2	9	12.8493
dddd]dd	chr15:65477486-65477771(-)$1	285	34	41	13.8082
EEEEKKF	chr12:112590603-112590925(+)$1	322	145	152	12.7808
eeeee[b	chr16:90015562-90015957(+)$1	395	238	245	16.9589
fff]eee	chr8:22108190-22108551(+)$1	361	54	61	16.9589
{CCCBBK	chr8:30669820-30670092(-)$1	272	118	125	13.8082
g]dddd:	chr6:111136359-111136639(-)$1	280	117	124	12.7808
a!!dddd	chr22:20099624-20099905(-)$1	281	181	188	13.8082
nnnnddd	chr8:144678390-144678706(-)$1	316	111	118	13.1232
a]cccii	chr17:40853795-40854061(-)$1	266	123	130	13.8082
iiiiiii	chr12:133404818-133405110(-)$1	292	232	239	13.2602
dmmmmdd	chr21:47721224-47721481(-)$1	257	39	46	12.8493
g[bb[a[	chr3:196074511-196074824(-)$1	313	38	45	12.7808
E{EEEEE	chr22:20099793-20100027(-)$1	234	11	18	12.7808
c[eeeee	chr6:31730659-31730979(+)$1	320	236	243	13.2602
DDDD}FF	chr20:1165127-1165394(-)$1	267	228	235	16.9589
gg[cccp	chr20:62338432-62338681(-)$1	249	29	36	12.7808
ggggggg	chr19:59084219-59084553(-)$1	334	49	56	13.2602
f"""bbm	chr12:133345649-133346006(-)$1	357	28	35	12.5068
ddd[eee	chr11:8707250-8707472(+)$1	222	72	79	13.1232
ggggggg	chr9:127118426-127118779(-)$1	353	54	61	13.1232
GGGG:::	chr19:7978265-7978568(+)$1	303	293	300	16.9589
qqqccc]	chr2:61763613-61763935(-)$1	322	291	298	13.1232
gg$$$$$	chr1:228270370-228270687(+)$1	317	151	158	13.8082
dddd$$$	chr16:31044904-31045244(+)$1	340	109	116	13.1232
JJJJccc	chr17:80871474-80871735(+)$1	261	184	191	16.9589
"ccc!!f	chr12:109124803-109125153(-)$1	350	79	86	16.9589
LLIIIII	chr19:55558632-55558918(+)$1	286	50	57	13.2602
ahhhhhh	chr1:1189987-1190276(-)$1	289	142	149	12.8493
+++ccc[	chr11:18425140-18425399(+)$1	259	125	132	12.8493
#gggggg	chr19:575082-575340(+)$1	258	143	150	16.9589
ccc:DDD	chr16:89663061-89663318(+)$1	257	31	38	12.0958
obb]eee	chr19:49605769-49606059(+)$1	290	64	71	12.7808
iiiiiii	chr16:1413478-1413809(-)$1	331	61	68	13.2602
""fffff	chr5:139038984-139039314(+)$1	330	105	112	16.9589
ggggggm	chr7:2147124-2147444(-)$1	320	221	228	16.9589
c[bb^^^	chr20:57467325-57467596(+)$1	271	67	74	13.1232
44eeeee	chr17:40265248-40265572(-)$1	324	115	122	13.2602
hhhh[a!	chr12:111180378-111180616(-)$1	238	150	157	12.7123
:EEEEEY	chr16:725962-726262(+)$1	300	271	278	16.9589
CC{BB{A	chr8:144676557-144676801(-)$1	244	47	54	12.8493
EEEE{HH	chr20:62331326-62331602(-)$1	276	75	82	13.1232
GGGGGG:	chr15:34671306-34671540(-)$1	234	66	73	12.9178
EEEEEEE	chr1:228270954-228271281(+)$1	327	61	68	12.9178
======l	chr17:80407351-80407646(-)$1	295	145	152	16.9589
ffbb[ff	chr22:39916696-39916954(+)$1	258	91	98	13.2602
dFFFFFF	chr12:30907138-30907450(-)$1	312	11	18	12.5068
""cccoo	chr6:36457025-36457340(+)$1	315	243	250	13.1917
fff"""b	chr9:131017192-131017515(+)$1	323	65	72	13.2602
CC}FFFF	chr22:19431304-19431642(-)$1	338	130	137	13.8082
eeeccc]	chr1:171560913-171561203(+)$1	290	87	94	12.5068
c]cccii	chr15:91415913-91416220(+)$1	307	207	214	13.2602
BDDDDEE	chr1:27929968-27930300(-)$1	332	99	106	13.8082
22hhhhh	chr16:2820956-2821282(+)$1	326	117	124	13.1232
oooeeee	chr5:179248427-179248714(+)$1	287	17	24	13.1232
ddnnnnn	chr15:64980434-64980749(-)$1	315	194	201	12.9178
fffffEE	chr4:763962-764209(-)$1	247	114	121	13.8082
[dddd[c	chr12:51566448-51566855(-)$1	407	32	39	12.7123
5ccc]dd	chr11:95522572-95522943(-)$1	371	100	107	13.8082

#DB
)...)))	chr3:49049827-49050107(+)$1	1	224	231	12.7808
)))))))	chr17:79879816-79880075(-)$1	1	141	148	16.9589
(((.(((	chr12:31478523-31478836(-)$1	1	22	29	13.1232
.(((((.	chr3:33481531-33481868(-)$1	1	252	259	13.8082
....)))	chr11:404640-404960(+)$1	1	42	49	13.2602
.((((((	chr2:97525513-97525824(-)$1	1	1	8	12.5068
.))))))	chr15:80214902-80215226(-)$1	1	96	103	12.8493
....)))	chr11:66130404-66130759(-)$1	1	18	25	12.7808
..(((((	chr16:89663178-89663450(+)$1	1	119	126	13.1917
)).))).	chr16:89725509-89725826(+)$1	1	140	147	12.7808
..(((((	chr22:19957649-19957940(-)$1	1	84	91	13.8082
.((....	chr1:1336739-1337076(+)$1	1	271	278	16.9589
)))))))	chrX:153276550-153276815(-)$1	1	150	157	16.9589
.......	chr17:76794067-76794362(-)$1	1	5	12	13.1232
(((((.(	chr9:140260656-140261004(-)$1	1	2	9	12.8493
)))).))	chr15:65477486-65477771(-)$1	1	34	41	13.8082
((((..(	chr12:112590603-112590925(+)$1	1	145	152	12.7808
(((((.(	chr16:90015562-90015957(+)$1	1	238	245	16.9589
))).)))	chr8:22108190-22108551(+)$1	1	54	61	16.9589
.(((((.	chr8:30669820-30670092(-)$1	1	118	125	13.8082
).)))).	chr6:111136359-111136639(-)$1	1	117	124	12.7808
(..((((	chr22:20099624-20099905(-)$1	1	181	188	13.8082
....)))	chr8:144678390-144678706(-)$1	1	111	118	13.1232
).)))((	chr17:40853795-40854061(-)$1	1	123	130	13.8082
(((((((	chr12:133404818-133405110(-)$1	1	232	239	13.2602
(....))	chr21:47721224-47721481(-)$1	1	39	46	12.8493
(.((.(.	chr3:196074511-196074824(-)$1	1	38	45	12.7808
(.(((((	chr22:20099793-20100027(-)$1	1	11	18	12.7808
(.(((((	chr6:31730659-31730979(+)$1	1	236	243	13.2602
)))).))	chr20:1165127-1165394(-)$1	1	228	235	16.9589
((.(((.	chr20:62338432-62338681(-)$1	1	29	36	12.7808
(((((((	chr19:59084219-59084553(-)$1	1	49	56	13.2602
(...((.	chr12:133345649-133346006(-)$1	1	28	35	12.5068
(((.(((	chr11:8707250-8707472(+)$1	1	72	79	13.1232
(((((((	chr9:127118426-127118779(-)$1	1	54	61	13.1232
))))...	chr19:7978265-7978568(+)$1	1	293	300	16.9589
...))).	chr2:61763613-61763935(-)$1	1	291	298	13.1232
((.....	chr1:228270370-228270687(+)$1	1	151	158	13.8082
((((...	chr16:31044904-31045244(+)$1	1	109	116	13.1232
))))(((	chr17:80871474-80871735(+)$1	1	184	191	16.9589
.(((..(	chr12:109124803-109125153(-)$1	1	79	86	16.9589
..(((((	chr19:55558632-55558918(+)$1	1	50	57	13.2602
(((((((	chr1:1189987-1190276(-)$1	1	142	149	12.8493
...(((.	chr11:18425140-18425399(+)$1	1	125	132	12.8493
.((((((	chr19:575082-575340(+)$1	1	143	150	16.9589
))).(((	chr16:89663061-89663318(+)$1	1	31	38	12.0958
.)).)))	chr19:49605769-49606059(+)$1	1	64	71	12.7808
(((((((	chr16:1413478-1413809(-)$1	1	61	68	13.2602
..(((((	chr5:139038984-139039314(+)$1	1	105	112	16.9589
((((((.	chr7:2147124-2147444(-)$1	1	221	228	16.9589
(.((...	chr20:57467325-57467596(+)$1	1	67	74	13.1232
..)))))	chr17:40265248-40265572(-)$1	1	115	122	13.2602
((((.(.	chr12:111180378-111180616(-)$1	1	150	157	12.7123
.))))).	chr16:725962-726262(+)$1	1	271	278	16.9589
((.((.(	chr8:144676557-144676801(-)$1	1	47	54	12.8493
((((.((	chr20:62331326-62331602(-)$1	1	75	82	13.1232
)))))).	chr15:34671306-34671540(-)$1	1	66	73	12.9178
(((((((	chr1:228270954-228271281(+)$1	1	61	68	12.9178
((((((.	chr17:80407351-80407646(-)$1	1	145	152	16.9589
))((.((	chr22:39916696-39916954(+)$1	1	91	98	13.2602
)((((((	chr12:30907138-30907450(-)$1	1	11	18	12.5068
..(((..	chr6:36457025-36457340(+)$1	1	243	250	13.1917
(((...(	chr9:131017192-131017515(+)$1	1	65	72	13.2602
)).))))	chr22:19431304-19431642(-)$1	1	130	137	13.8082
)))))).	chr1:171560913-171561203(+)$1	1	87	94	12.5068
).)))((	chr15:91415913-91416220(+)$1	1	207	214	13.2602
(((((((	chr1:27929968-27930300(-)$1	1	99	106	13.8082
..)))))	chr16:2820956-2821282(+)$1	1	117	124	13.1232
...))))	chr5:179248427-179248714(+)$1	1	17	24	13.1232
((.....	chr15:64980434-64980749(-)$1	1	194	201	12.9178
)))))((	chr4:763962-764209(-)$1	1	114	121	13.8082
.((((.(	chr12:51566448-51566855(-)$1	1	32	39	12.7123
.))).))	chr11:95522572-95522943(-)$1	1	100	107	13.8082

#PSSM
U : 0.75	G : 0.10	g : 0.04	C : 0.04	A : 0.02	u : 0.02	
G : 0.76	C : 0.09	g : 0.06	U : 0.06	
C : 0.79	U : 0.06	c : 0.05	G : 0.04	A : 0.02	u : 0.01	
U : 0.87	u : 0.06	A : 0.05	
G : 0.89	g : 0.09	U : 0.01	
G : 0.82	g : 0.09	U : 0.08	
G : 0.78	g : 0.09	U : 0.05	C : 0.04	A : 0.02	

#score	1011.0821917808238
#seq	73
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_transcript_m2_run2.nuc.txt

#NT
uuuuguuuu	chr19:29028896-29029151(-)$1	255	100	109	19.3076
UUUUAUUUU	chr16:56462981-56463229(-)$1	248	142	151	22.7692
UUUUAUUUA	chr8:128753520-128753767(+)$1	247	61	70	18.3461
CUUUAUUUU	chr8:23429727-23430007(+)$1	280	89	98	18.4423
AUUUAUUUU	chr6:16148272-16148538(+)$1	266	100	109	18.8269
UUUUAUUGU	chr15:38776983-38777255(+)$1	272	191	200	18.8269
UUUAAUUUU	chr8:101715240-101715492(-)$1	252	214	223	18.2500
UUCUAUUUU	chr11:47491731-47491997(-)$1	266	224	233	18.2500
UUUUAUUUU	chr19:10578460-10578707(+)$1	247	72	81	22.7692
UUUUUUUUU	chr7:127231546-127231814(+)$1	268	89	98	19.0192
uuuuguuuu	chr19:29028951-29029198(-)$1	247	147	156	19.3076
UUUUAAUUU	chr5:137088274-137088556(-)$1	282	22	31	18.8269
UUUUAAUUU	chr4:174252814-174253092(-)$1	278	113	122	18.8269
uuuuaauuu	chr6:43753926-43754176(+)$1	250	81	90	18.8269
UUUGAUUUU	chr19:46029981-46030282(+)$1	301	91	100	18.1538
uuguauuuu	chr1:226170612-226170868(-)$1	256	144	153	18.3461
auuuauuuu	chr8:90945704-90945981(-)$1	277	13	22	18.8269
UUUUAUAUU	chr1:182352694-182352978(-)$1	284	95	104	18.0576
UUUAAUUUU	chr14:70238190-70238477(+)$1	287	275	284	18.2500
UUUUAUUGU	chr6:31698288-31698539(-)$1	251	103	112	18.8269
UUUUAUUUU	chr8:101734116-101734344(-)$1	228	184	193	22.7692
AUUUAUUUU	chr6:16148229-16148465(+)$1	236	143	152	18.8269
UUUUAUCUU	chr14:56150920-56151169(+)$1	249	162	171	18.0576
uuuuguuuu	chr19:18390586-18390863(-)$1	277	205	214	19.3076
UUGUAUUUU	chr4:48499963-48500225(-)$1	262	175	184	18.3461
UUUUAUUAU	chr18:55216847-55217109(-)$1	262	106	115	18.7307
UCUUAUUUU	chr6:37142966-37143259(+)$1	293	184	193	18.1538
uuuuacuuu	chr19:18390666-18390885(-)$1	219	2	11	18.4423
UUUUGUUUU	chr19:1258684-1258928(+)$1	244	84	93	19.3076
UUUUAUUAU	chr1:53692502-53692756(-)$1	254	160	169	18.7307
UUAUAUUUU	chr5:38937946-38938234(-)$1	288	1	10	18.2500
UUUUGUUUU	chr16:4307125-4307413(-)$1	288	5	14	19.3076
auuuauuuu	chr10:22032241-22032553(+)$1	312	94	103	18.8269
UUUUAUUUU	chr17:47128505-47128752(+)$1	247	91	100	22.7692
auuuauuuu	chr11:85989505-85989841(+)$1	336	261	270	18.8269
UUUUAUUUU	chr8:101734082-101734294(-)$1	212	134	143	22.7692
UUUUAUUGU	chr3:33910861-33911121(+)$1	260	240	249	18.8269
uauuauuuu	chr1:207863118-207863366(+)$1	248	31	40	18.2500
UUUUAUUUA	chr3:179342046-179342300(+)$1	254	37	46	18.3461
UUUUGUUUU	chr15:77241869-77242152(+)$1	283	62	71	19.3076
UUUUUUUUU	chr10:69832442-69832690(-)$1	248	234	243	19.0192
UUUUAUUUA	chr19:50886019-50886276(+)$1	257	191	200	18.3461
uauuauuuu	chr22:17286382-17286686(-)$1	304	146	155	18.2500
uuuuauuuu	chr1:29474185-29474471(-)$1	286	136	145	22.7692
uuuuaauuu	chr6:43753844-43754101(+)$1	257	163	172	18.8269
UUUUAUUUU	chr7:26231265-26231533(-)$1	268	87	96	22.7692
uuuuuuuuu	chr3:128338890-128339159(-)$1	269	88	97	19.0192
UUUUAUUUU	chr8:101734094-101734316(-)$1	222	156	165	22.7692
UUUUAAUUU	chr4:174252911-174253218(-)$1	307	239	248	18.8269
UUUUAUUAU	chr10:121340794-121341043(-)$1	249	79	88	18.7307
uuuucuuuu	chr2:68405914-68406198(-)$1	284	39	48	18.8269

#otherMatches

#Struct PSSM
=======oo	chr15:77242025-77242307(+)$1	282	70	79	18.8269
zzzzzzzzz	chr19:29028896-29029151(-)$1	255	100	109	19.3076
===!!hhhh	chr16:56462981-56463229(-)$1	248	142	151	22.7692
:dddd"""e	chr8:128753520-128753767(+)$1	247	61	70	18.3461
fhhhhhhhh	chr8:23429727-23430007(+)$1	280	89	98	18.4423
:::hhhhhh	chr6:16148272-16148538(+)$1	266	100	109	18.8269
\\\\\\\EE	chr15:38776983-38777255(+)$1	272	191	200	18.8269
JJJYYFFFF	chr8:101715240-101715492(-)$1	252	214	223	18.2500
ggggggmmm	chr11:47491731-47491997(-)$1	266	224	233	18.2500
dddd[hhhh	chr19:10578460-10578707(+)$1	247	72	81	22.7692
=========	chr7:127231546-127231814(+)$1	268	89	98	19.0192
888888eee	chr19:29028951-29029198(-)$1	247	147	156	19.3076
ee:::::::	chr5:137088274-137088556(-)$1	282	22	31	18.8269
666ccc22c	chr4:174252814-174253092(-)$1	278	113	122	18.8269
ffff:::::	chr6:43753926-43754176(+)$1	250	81	90	18.8269
eeee]hhhh	chr19:46029981-46030282(+)$1	301	91	100	18.1538
:ffffff[e	chr1:226170612-226170868(-)$1	256	144	153	18.3461
FFFFF::::	chr8:90945704-90945981(-)$1	277	13	22	18.8269
iiiiiiiim	chr1:182352694-182352978(-)$1	284	95	104	18.0576
:::::::::	chr14:70238190-70238477(+)$1	287	275	284	18.2500
=======[b	chr6:31698288-31698539(-)$1	251	103	112	18.8269
:::::::::	chr8:101734116-101734344(-)$1	228	184	193	22.7692
::iiiiiii	chr6:16148229-16148465(+)$1	236	143	152	18.8269
shhhhhhhh	chr14:56150920-56151169(+)$1	249	162	171	18.0576
::::::eee	chr19:18390586-18390863(-)$1	277	205	214	19.3076
!eeeeeppp	chr4:48499963-48500225(-)$1	262	175	184	18.3461
fffoooooo	chr18:55216847-55217109(-)$1	262	106	115	18.7307
qqqqqqqq=	chr6:37142966-37143259(+)$1	293	184	193	18.1538
::::::::=	chr19:18390666-18390885(-)$1	219	2	11	18.4423
=========	chr19:1258684-1258928(+)$1	244	84	93	19.3076
iiiiiiiii	chr1:53692502-53692756(-)$1	254	160	169	18.7307
:::::::::	chr5:38937946-38938234(-)$1	288	1	10	18.2500
JJJJJJJJJ	chr16:4307125-4307413(-)$1	288	5	14	19.3076
g22dddd::	chr10:22032241-22032553(+)$1	312	94	103	18.8269
dddd[gggg	chr17:47128505-47128752(+)$1	247	91	100	22.7692
::ddddmmm	chr11:85989505-85989841(+)$1	336	261	270	18.8269
ffffff^^^	chr8:101734082-101734294(-)$1	212	134	143	22.7692
ppppppddd	chr3:33910861-33911121(+)$1	260	240	249	18.8269
ggggggg!!	chr1:207863118-207863366(+)$1	248	31	40	18.2500
bpppppppb	chr3:179342046-179342300(+)$1	254	37	46	18.3461
ggggggg##	chr15:77241869-77242152(+)$1	283	62	71	19.3076
JJJJJ::::	chr10:69832442-69832690(-)$1	248	234	243	19.0192
fffffflll	chr19:50886019-50886276(+)$1	257	191	200	18.3461
HHHHHHHHK	chr22:17286382-17286686(-)$1	304	146	155	18.2500
ffff]ffff	chr1:29474185-29474471(-)$1	286	136	145	22.7692
ffff:::::	chr6:43753844-43754101(+)$1	257	163	172	18.8269
hhhhh[ccc	chr7:26231265-26231533(-)$1	268	87	96	22.7692
=======qq	chr3:128338890-128339159(-)$1	269	88	97	19.0192
ffffff^^^	chr8:101734094-101734316(-)$1	222	156	165	22.7692
((iiiiiii	chr4:174252911-174253218(-)$1	307	239	248	18.8269
hhhhh[bb!	chr10:121340794-121341043(-)$1	249	79	88	18.7307
d333bb:dd	chr2:68405914-68406198(-)$1	284	39	48	18.8269

#DB
(((((((..	chr15:77242025-77242307(+)$1	1	70	79	18.8269
.........	chr19:29028896-29029151(-)$1	1	100	109	19.3076
(((..((((	chr16:56462981-56463229(-)$1	1	142	151	22.7692
.((((...(	chr8:128753520-128753767(+)$1	1	61	70	18.3461
)))))))))	chr8:23429727-23430007(+)$1	1	89	98	18.4423
...((((((	chr6:16148272-16148538(+)$1	1	100	109	18.8269
.......))	chr15:38776983-38777255(+)$1	1	191	200	18.8269
)))..))))	chr8:101715240-101715492(-)$1	1	214	223	18.2500
((((((...	chr11:47491731-47491997(-)$1	1	224	233	18.2500
((((.((((	chr19:10578460-10578707(+)$1	1	72	81	22.7692
(((((((((	chr7:127231546-127231814(+)$1	1	89	98	19.0192
......)))	chr19:29028951-29029198(-)$1	1	147	156	19.3076
)).......	chr5:137088274-137088556(-)$1	1	22	31	18.8269
...)))..)	chr4:174252814-174253092(-)$1	1	113	122	18.8269
)))).....	chr6:43753926-43754176(+)$1	1	81	90	18.8269
)))).))))	chr19:46029981-46030282(+)$1	1	91	100	18.1538
.((((((.(	chr1:226170612-226170868(-)$1	1	144	153	18.3461
(((((....	chr8:90945704-90945981(-)$1	1	13	22	18.8269
((((((((.	chr1:182352694-182352978(-)$1	1	95	104	18.0576
.........	chr14:70238190-70238477(+)$1	1	275	284	18.2500
(((((((.(	chr6:31698288-31698539(-)$1	1	103	112	18.8269
.........	chr8:101734116-101734344(-)$1	1	184	193	22.7692
..(((((((	chr6:16148229-16148465(+)$1	1	143	152	18.8269
.))))))))	chr14:56150920-56151169(+)$1	1	162	171	18.0576
......(((	chr19:18390586-18390863(-)$1	1	205	214	19.3076
.(((((...	chr4:48499963-48500225(-)$1	1	175	184	18.3461
(((......	chr18:55216847-55217109(-)$1	1	106	115	18.7307
........)	chr6:37142966-37143259(+)$1	1	184	193	18.1538
........(	chr19:18390666-18390885(-)$1	1	2	11	18.4423
)))))))))	chr19:1258684-1258928(+)$1	1	84	93	19.3076
)))))))))	chr1:53692502-53692756(-)$1	1	160	169	18.7307
.........	chr5:38937946-38938234(-)$1	1	1	10	18.2500
(((((((((	chr16:4307125-4307413(-)$1	1	5	14	19.3076
)..))))..	chr10:22032241-22032553(+)$1	1	94	103	18.8269
((((.((((	chr17:47128505-47128752(+)$1	1	91	100	22.7692
..((((...	chr11:85989505-85989841(+)$1	1	261	270	18.8269
((((((...	chr8:101734082-101734294(-)$1	1	134	143	22.7692
......)))	chr3:33910861-33911121(+)$1	1	240	249	18.8269
(((((((..	chr1:207863118-207863366(+)$1	1	31	40	18.2500
(.......)	chr3:179342046-179342300(+)$1	1	37	46	18.3461
(((((((..	chr15:77241869-77242152(+)$1	1	62	71	19.3076
)))))....	chr10:69832442-69832690(-)$1	1	234	243	19.0192
((((((...	chr19:50886019-50886276(+)$1	1	191	200	18.3461
((((((((.	chr22:17286382-17286686(-)$1	1	146	155	18.2500
)))).))))	chr1:29474185-29474471(-)$1	1	136	145	22.7692
)))).....	chr6:43753844-43754101(+)$1	1	163	172	18.8269
(((((.(((	chr7:26231265-26231533(-)$1	1	87	96	22.7692
(((((((..	chr3:128338890-128339159(-)$1	1	88	97	19.0192
((((((...	chr8:101734094-101734316(-)$1	1	156	165	22.7692
..(((((((	chr4:174252911-174253218(-)$1	1	239	248	18.8269
(((((.((.	chr10:121340794-121341043(-)$1	1	79	88	18.7307
)...)).((	chr2:68405914-68406198(-)$1	1	39	48	18.8269

#PSSM
U : 0.65	u : 0.23	a : 0.05	A : 0.03	C : 0.01	
U : 0.69	u : 0.24	a : 0.03	C : 0.01	
U : 0.65	u : 0.26	C : 0.01	g : 0.01	G : 0.01	A : 0.01	
U : 0.65	u : 0.28	A : 0.03	G : 0.01	
A : 0.61	a : 0.19	g : 0.05	G : 0.05	U : 0.03	u : 0.01	c : 0.01	
U : 0.65	u : 0.23	A : 0.05	a : 0.03	c : 0.01	
U : 0.67	u : 0.28	A : 0.01	C : 0.01	
U : 0.57	u : 0.28	G : 0.07	A : 0.05	
U : 0.65	u : 0.28	A : 0.05	

#score	1004.1923076923078
#seq	52
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_CDS_m3_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
$$$ffffff"""ffffff$$$$$eeeee!!aqqqqqqqqa22eeeee333ffffff]ffffffddddddddnnnnnddddEEEEESSSSSSSSSSBBKKBB{HHHHHHHHTTTTTTTTTTTFFFFFF{EEEEELLLGGGGGGGdddd!!ccclllccc22ddddeeeee[bb[bb[ammmma]bbbb]eeeeeGGGGGGGZZZEEEEE}FFFFFF@@@@@@@@@@@HHHHHHHH}BB}BB\\\\\\\\\E	chr3:50683469-50683786(+)$1	317	32	282	750.0000

#DB
...((((((...((((((.....(((((..(........)..)))))...)))))).))))))))))((((.....))))(((((..........((..((.((((((((...........((((((.(((((...(((((((((((..(((...)))..))))(((((.((.((.(....).)))).))))))))))))...))))).))))))...........)))))))).)).)).........)	chr3:50683469-50683786(+)$1	1	32	282	750.0000

#PSSM
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	

#score	750.0
#seq	1
#width	250
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_UTR_m3_run1.nuc.txt

#NT
GGGCGGGGCGGCUGUGGGGAGGAAGGUGA	chr21:46644501-46644796(+)$1	295	137	166	28.4772
gggccggggggccgcggcgAGCGAGGAGG	chr3:197024767-197025070(-)$1	303	170	199	31.5454
UGGUGGGGUGUUUGGGGUGGGGGCGGAGG	chr19:7977889-7978183(+)$1	294	112	141	26.5454
gggaggaaaagaggaggaggcggaggaga	chr17:43225764-43226012(+)$1	248	168	197	26.8863
Agcggcggcggcggcggcggcggcggcgg	chr10:120967075-120967360(+)$1	285	141	170	28.0227
GGCCggggugggggugggggugugggggg	chr16:447639-447891(+)$1	252	9	38	28.0227
AGGCGCGGAGGGGCUGGCUGGGCAGGAGG	chr11:9685582-9685850(+)$1	268	88	117	21.5454
gggagggguaagggaggugagggcggcgg	chr3:52719745-52720021(-)$1	276	109	138	30.7499
GGGGCGUGGGGGGGAGGAGCGGGAGGAUA	chr17:46131920-46132174(+)$1	254	93	122	26.4318
GGGAAGGGGGCUGGAGGCGAGGCUUGAGG	chr2:55646731-55646994(-)$1	263	150	179	24.4999
GGGGUGGGGGAAGGAAGUGGCGGGGGAAG	chr14:54421094-54421332(-)$1	238	53	82	24.0454
GGGAAGGGAGGUCGCGGAGGGGGAGGGGA	chr3:100428687-100428940(+)$1	253	90	119	30.7499
GGCCGGGGCGCGGGAGGUGAGGGCCGUGG	chr7:98972296-98972623(+)$1	327	92	121	29.0454
ggcgggggccggccagcggggggcggugg	chr8:102217345-102217690(-)$1	345	78	107	22.7954
ggcgggcgggcgggcggacgggcagguga	chr20:62526561-62526813(+)$1	252	90	119	22.1136
ggaggcgguggaggaagagguggcggcgg	chr4:39699790-39700053(+)$1	263	70	99	25.6363
ggcggcggcggcggcggcggcggcggcgg	chr7:77166498-77166738(+)$1	240	22	51	32.2272
GCGCUUUGAGGCGGCGGCGGCGGAGGAGC	chr20:8112759-8113032(+)$1	273	195	224	21.9999
GGGCGGGGCGGCUGUGGGGAGGAAGGUGA	chr21:46644436-46644683(+)$1	247	202	231	28.4772
GGggcggacggaggcggcggcggcggcgg	chr1:1822260-1822545(-)$1	285	60	89	32.9090
ggccgcggaggaggaggaaggggaggagg	chr18:47807640-47807924(-)$1	284	80	109	30.8636
gggaggaaaagaggaggaggcggaggaga	chr17:43225820-43226096(+)$1	276	112	141	26.8863
GGAUGGGGGCCGUGGGUGGGGGGUGGGGG	chr16:88725000-88725283(-)$1	283	56	85	22.1136
GGGCAGACGGGCGGGGGUUGGGGCGGAGG	chr6:32157646-32157895(-)$1	249	84	113	29.1590
GAGUGGGGGUGGCCGAGCGGGGGCGGUGG	chr19:40790756-40791022(-)$1	266	70	99	21.3181
cagcgggggcaaggcggaggcggaggcgg	chr7:100136789-100137104(+)$1	315	224	253	26.2045
gggcgggcgggggcggacgggggcgggcg	chr6:41748370-41748640(+)$1	270	82	111	26.7727
GGGCGUGGGGCCCGUGGAGCAGGAGGGCG	chr19:17450229-17450548(+)$1	319	131	160	23.0227
gggccgggcggcggcagggacugcggagg	chr8:8243846-8244100(-)$1	254	34	63	26.9999
gggcgggcgggcgggcgcgAGGGCAggga	chr14:105331672-105331944(+)$1	272	57	86	26.6590
gggcgggcgggcgggugagggggcggagc	chr19:56166236-56166481(+)$1	245	39	68	32.6818
GGGAGggcggcgggcggcgggcggcgggg	chr19:6739610-6739902(+)$1	292	91	120	26.2045
GGGGCGGGCAGAGGCGGAGAUGGCGGAGG	chr1:201123211-201123519(-)$1	308	114	143	30.6363
GGGCCAGAGGCCUGAGGCGCGGCGGGCGG	chr3:45730826-45731084(+)$1	258	174	203	19.9545
gagaggggccgcggagguggagguggggg	chr7:766838-767092(-)$1	254	66	95	28.7045
ggggaggagcgcggcggcgacggcggcgg	chr12:49761090-49761399(+)$1	309	139	168	29.9545
cggcggcagcgcggcggugggggugcggc	chr2:208576280-208576542(+)$1	262	107	136	19.4999
gggcgggggggaggaggagggggaggagg	chr17:55333892-55334153(+)$1	261	87	116	43.0227
gggaggaaaagaggaggaggcggaggaga	chr17:43225919-43226157(+)$1	238	13	42	26.8863
GGGGAGGGGGCGGCUGUUGAGGGCGGCGG	chr2:208576444-208576724(+)$1	280	100	129	25.6363
gggcgggcgUUGCCGGGAGGCGGAGGGGU	chr7:111202339-111202601(-)$1	262	222	251	21.3181
ggggaggggggcuguggugagaguagggg	chr17:41622786-41623047(+)$1	261	65	94	23.2499
GCGGAGGUCGCGGGCGGGAGGGGAGGAGG	chr2:183902770-183903030(-)$1	260	93	122	24.3863

#otherMatches

#Struct PSSM
eee"""a[eeeee[ccceeeeeqqqqqqq	chr3:195635837-195636077(-)$1	240	97	126	24.2727
e[ccc!!bb!!bboooooobb4444bb22	chr21:46644501-46644796(+)$1	295	137	166	28.4772
ooccc]bbGGGGGGG{CCC:bboooooob	chr3:197024767-197025070(-)$1	303	170	199	31.5454
:::FFFFFF~~~~DDDD}EEEEE}DDDDE	chr19:7977889-7978183(+)$1	294	112	141	26.5454
[ccc++++++++++++++ccc"""bb[a!	chr17:43225764-43226012(+)$1	248	168	197	26.8863
!bb[bb[bb[bbmmmmbb]bb]bb]bb22	chr10:120967075-120967360(+)$1	285	141	170	28.0227
f[bbpppppppbb]ffffff:HHHHHHHH	chr16:447639-447891(+)$1	252	9	38	28.0227
bb]ccc55555dddd]dddd]ddddDDDD	chr11:9685582-9685850(+)$1	268	88	117	21.5454
ooooooccc:IIIIIIIIIYYDDDDBB::	chr3:52719745-52720021(-)$1	276	109	138	30.7499
adddd[bb[ggggggg[ffffff''''''	chr17:46131920-46132174(+)$1	254	93	122	26.4318
ddd22ggggggg:::::bb!!cccmmmmc	chr2:55646731-55646994(-)$1	263	150	179	24.4999
::DDDD{JJJJJJJJJJJ:DDDDNNNNNB	chr14:54421094-54421332(-)$1	238	53	82	24.0454
xxxxxa]ffffff]bb>>>>>>>>>>>>>	chr3:100428687-100428940(+)$1	253	90	119	30.7499
f[allla]ffffff666666dddd]bb]b	chr7:98972296-98972623(+)$1	327	92	121	29.0454
eeeeCCC{FFFFFF::FFFFFFhhhhhhh	chr8:102217345-102217690(-)$1	345	78	107	22.7954
obb]ccc22dddddddd[eeeeeoooooo	chr20:62526561-62526813(+)$1	252	90	119	22.1136
rrrffffff22bb::HHHHHHHH{BB{CC	chr4:39699790-39700053(+)$1	263	70	99	25.6363
JJJJJJJJJ{IIIIIIIII{DDDD:bb[b	chr7:77166498-77166738(+)$1	240	22	51	32.2272
fffdddd::a[ccc!!hhhhhhhhrrrrr	chr20:8112759-8113032(+)$1	273	195	224	21.9999
gg]a]bb22dddd]a]dddd333bbBBYY	chr21:46644436-46644683(+)$1	247	202	231	28.4772
nnnnffffff4444dddd]accc]bb]dd	chr1:1822260-1822545(-)$1	285	60	89	32.9090
ggbb[avvvvvvvvvvvvva]bb::::dd	chr18:47807640-47807924(-)$1	284	80	109	30.8636
[ccc++++++++++++++ccc"""bb[a!	chr17:43225820-43226096(+)$1	276	112	141	26.8863
EEEKKBB{BBBB{CCC{EEEEE{CCCEEE	chr16:88725000-88725283(-)$1	283	56	85	22.1136
:::eeeee!!bb[ggggggg!!bbppppp	chr6:32157646-32157895(-)$1	249	84	113	29.1590
eee]eeeee]ccc4444ggggggg]dddd	chr19:40790756-40791022(-)$1	266	70	99	21.3181
iiiiii::ccc"""a[eeeeepppppppe	chr7:100136789-100137104(+)$1	315	224	253	26.2045
nddddcccEEEEE{DDDD{EEEEELLLEE	chr6:41748370-41748640(+)$1	270	82	111	26.7727
EEEEEEEEEKKAKKCCCKKEEEEEggggg	chr19:17450229-17450548(+)$1	319	131	160	23.0227
bb]ccc]bb:DDDD{DDDD{EEEEEA{FF	chr8:8243846-8244100(-)$1	254	34	63	26.9999
cooooooccc]ggggggg22dddd:bb!!	chr14:105331672-105331944(+)$1	272	57	86	26.6590
eeeeeBBA{DDDDA{EEEEE{CCC:::dd	chr19:56166236-56166481(+)$1	245	39	68	32.6818
DDD{CCC{A{ADDDDKKA{EEEEE{DDDD	chr19:6739610-6739902(+)$1	292	91	120	26.2045
fff22dddd4444bb333===========	chr1:201123211-201123519(-)$1	308	114	143	30.6363
::::iiiiiiiii####a[ccc[bb[fff	chr3:45730826-45731084(+)$1	258	174	203	19.9545
[bb!!a[eeeee[a[dddd[dddd"""ff	chr7:766838-767092(-)$1	254	66	95	28.7045
ii]a4444bb]a]bb22a]bb]bb]bbHH	chr12:49761090-49761399(+)$1	309	139	168	29.9545
eee]bbdddd]ddddffffffJJJJJJJJ	chr2:208576280-208576542(+)$1	262	107	136	19.4999
ffffff]bb]bb]ccc:a[bb[bb####i	chr17:55333892-55334153(+)$1	261	87	116	43.0227
{EEEEE::::::::::::hhhhhhhh'''	chr17:43225919-43226157(+)$1	238	13	42	26.8863
pppbb]bb]gggggggCCC{DDDDDDDDN	chr2:208576444-208576724(+)$1	280	100	129	25.6363
d[ccc[bb[bb[cccnnnnnccc]bb]bb	chr7:111202339-111202601(-)$1	262	222	251	21.3181
EEFFFFFFAEEEEE{DDDD{DDDDCCCJJ	chr17:41622786-41623047(+)$1	261	65	94	23.2499
bbtttttttttttbb333ggggggg333d	chr2:183902770-183903030(-)$1	260	93	122	24.3863

#DB
(((...(.(((((.((((((((.......	chr3:195635837-195636077(-)$1	1	97	126	24.2727
(.(((..((..((......))....))..	chr21:46644501-46644796(+)$1	1	137	166	28.4772
..))).))(((((((.(((.((......)	chr3:197024767-197025070(-)$1	1	170	199	31.5454
...))))))....)))).))))).)))))	chr19:7977889-7978183(+)$1	1	112	141	26.5454
.(((..............(((...((.(.	chr17:43225764-43226012(+)$1	1	168	197	26.8863
.((.((.((.((....)).)).)).))..	chr10:120967075-120967360(+)$1	1	141	170	28.0227
(.((.......)).)))))).((((((((	chr16:447639-447891(+)$1	1	9	38	28.0227
)).))).....)))).)))).))))((((	chr11:9685582-9685850(+)$1	1	88	117	21.5454
......))).)))))))))..))))))..	chr3:52719745-52720021(-)$1	1	109	138	30.7499
(((((.((.(((((((.((((((......	chr17:46131920-46132174(+)$1	1	93	122	26.4318
)))..))))))).....((..(((....)	chr2:55646731-55646994(-)$1	1	150	179	24.4999
..((((.(((((((((((.((((.....(	chr14:54421094-54421332(-)$1	1	53	82	24.0454
.....).)))))).)).............	chr3:100428687-100428940(+)$1	1	90	119	30.7499
(.(...).))))))......)))).)).)	chr7:98972296-98972623(+)$1	1	92	121	29.0454
))))(((.((((((..(((((((((((((	chr8:102217345-102217690(-)$1	1	78	107	22.7954
.)).)))..))))((((.(((((......	chr20:62526561-62526813(+)$1	1	90	119	22.1136
...))))))..))..((((((((.((.((	chr4:39699790-39700053(+)$1	1	70	99	25.6363
(((((((((.(((((((((.((((.((.(	chr7:77166498-77166738(+)$1	1	22	51	32.2272
)))))))..(.(((..((((((((.....	chr20:8112759-8113032(+)$1	1	195	224	21.9999
)).).))..)))).).))))...))))..	chr21:46644436-46644683(+)$1	1	202	231	28.4772
....))))))....)))).)))).)).))	chr1:1822260-1822545(-)$1	1	60	89	32.9090
))((.(.............).))....((	chr18:47807640-47807924(-)$1	1	80	109	30.8636
.(((..............(((...((.(.	chr17:43225820-43226096(+)$1	1	112	141	26.8863
(((..((.((((.(((.(((((.((((((	chr16:88725000-88725283(-)$1	1	56	85	22.1136
...(((((..((.(((((((..((.....	chr6:32157646-32157895(-)$1	1	84	113	29.1590
))).))))).)))....))))))).))))	chr19:40790756-40791022(-)$1	1	70	99	21.3181
))))))..(((...(.(((((.......)	chr7:100136789-100137104(+)$1	1	224	253	26.2045
.)))))))(((((.((((.(((((...((	chr6:41748370-41748640(+)$1	1	82	111	26.7727
(((((((((..(..(((..((((((((((	chr19:17450229-17450548(+)$1	1	131	160	23.0227
)).))).)).((((.((((.((((((.((	chr8:8243846-8244100(-)$1	1	34	63	26.9999
(......))).)))))))..)))).((..	chr14:105331672-105331944(+)$1	1	57	86	26.6590
)))))(((.(((((.(((((.(((...((	chr19:56166236-56166481(+)$1	1	39	68	32.6818
(((.(((.(.(((((..(.(((((.((((	chr19:6739610-6739902(+)$1	1	91	120	26.2045
)))..))))....))...)))))))))))	chr1:201123211-201123519(-)$1	1	114	143	30.6363
....(((((((((....(.(((.((.(((	chr3:45730826-45731084(+)$1	1	174	203	19.9545
.((..(.(((((.(.((((.((((...((	chr7:766838-767092(-)$1	1	66	95	28.7045
)).)....)).).))..).)).)).))))	chr12:49761090-49761399(+)$1	1	139	168	29.9545
))).)))))).))))))))))((((((((	chr2:208576280-208576542(+)$1	1	107	136	19.4999
)))))).)).)).))).(.((.((....(	chr17:55333892-55334153(+)$1	1	87	116	43.0227
.(((((............((((((((...	chr17:43225919-43226157(+)$1	1	13	42	26.8863
...)).)).)))))))(((.((((((((.	chr2:208576444-208576724(+)$1	1	100	129	25.6363
(.(((.((.((.(((.....))).)).))	chr7:111202339-111202601(-)$1	1	222	251	21.3181
((((((((((((((.((((.(((((((((	chr17:41622786-41623047(+)$1	1	65	94	23.2499
((...........))...)))))))...)	chr2:183902770-183903030(-)$1	1	93	122	24.3863

#PSSM
G : 0.45	g : 0.43	A : 0.04	c : 0.04	U : 0.02	
g : 0.45	G : 0.43	C : 0.04	a : 0.04	A : 0.02	
G : 0.38	g : 0.38	c : 0.11	C : 0.06	a : 0.02	A : 0.02	
C : 0.22	c : 0.22	g : 0.18	a : 0.11	G : 0.11	U : 0.06	A : 0.06	
g : 0.43	G : 0.22	A : 0.11	c : 0.06	C : 0.06	U : 0.04	a : 0.04	
g : 0.47	G : 0.34	c : 0.09	U : 0.04	C : 0.02	A : 0.02	
g : 0.45	G : 0.36	a : 0.06	U : 0.04	c : 0.04	A : 0.02	
G : 0.36	g : 0.31	a : 0.13	c : 0.11	C : 0.02	A : 0.02	U : 0.02	
g : 0.27	G : 0.20	c : 0.13	C : 0.11	a : 0.09	u : 0.06	A : 0.06	U : 0.04	
G : 0.36	g : 0.34	c : 0.11	a : 0.09	U : 0.04	C : 0.02	A : 0.02	
g : 0.45	G : 0.20	C : 0.18	U : 0.04	a : 0.04	c : 0.04	A : 0.02	
c : 0.22	a : 0.18	G : 0.18	C : 0.13	g : 0.13	A : 0.06	U : 0.06	
g : 0.47	G : 0.25	U : 0.11	C : 0.09	c : 0.04	u : 0.02	
g : 0.49	G : 0.36	C : 0.09	c : 0.04	
c : 0.22	a : 0.20	A : 0.13	U : 0.11	G : 0.11	C : 0.09	g : 0.06	u : 0.04	
g : 0.45	G : 0.40	A : 0.04	a : 0.04	c : 0.02	u : 0.02	
g : 0.49	G : 0.38	U : 0.04	C : 0.02	c : 0.02	a : 0.02	
a : 0.20	c : 0.18	G : 0.11	U : 0.11	C : 0.11	A : 0.11	u : 0.09	g : 0.06	
g : 0.49	G : 0.36	U : 0.04	C : 0.02	c : 0.02	a : 0.02	A : 0.02	
g : 0.40	G : 0.25	A : 0.18	a : 0.09	C : 0.06	
G : 0.38	g : 0.22	c : 0.20	C : 0.06	u : 0.04	A : 0.02	U : 0.02	a : 0.02	
G : 0.47	g : 0.43	C : 0.02	u : 0.02	c : 0.02	a : 0.02	
g : 0.45	G : 0.38	C : 0.06	A : 0.04	u : 0.02	c : 0.02	
A : 0.25	c : 0.22	C : 0.15	a : 0.15	u : 0.06	g : 0.04	U : 0.04	G : 0.04	
g : 0.45	G : 0.43	U : 0.02	C : 0.02	A : 0.02	c : 0.02	a : 0.02	
g : 0.49	G : 0.47	c : 0.02	
A : 0.22	a : 0.15	c : 0.15	g : 0.15	G : 0.11	U : 0.09	u : 0.04	C : 0.04	
g : 0.49	G : 0.40	U : 0.02	A : 0.02	c : 0.02	C : 0.02	
g : 0.36	G : 0.31	A : 0.11	a : 0.11	c : 0.04	C : 0.02	U : 0.02	

#score	1179.1363636363624
#seq	44
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_CDS_m3_run1.nuc.txt

#NT
CCCUGGG	chr9:140136982-140137226(+)$1	244	100	107	16.8461
CCCUGUG	chr6:26199222-26199461(-)$1	239	67	74	12.9230
CCCUGUG	chr2:232319871-232320078(-)$1	207	14	21	12.9230
CCCUGGG	chr5:149786343-149786622(-)$1	279	54	61	16.8461
UCCUGGG	chr3:58064347-58064590(+)$1	243	116	123	12.9230
GCCUGGG	chr2:216300323-216300536(-)$1	213	57	64	13.0769
CCCUCGG	chr12:125298740-125298981(-)$1	241	97	104	12.7692
CCCUGUG	chr5:149826264-149826576(-)$1	312	30	37	12.9230
GCCUGGG	chr19:39138360-39138649(+)$1	289	163	170	13.0769
cccucgg	chr22:24109479-24109810(-)$1	331	73	80	12.7692
CCCUUGG	chr1:64101807-64102116(+)$1	309	267	274	12.5384
GCCUGGG	chr16:30081360-30081623(+)$1	263	18	25	13.0769
CUCUGGG	chrX:152966315-152966531(-)$1	216	20	27	13.3076
GCCUGGG	chr11:46741254-46741510(+)$1	256	162	169	13.0769
CCCUGGG	chr2:74691958-74692241(-)$1	283	27	34	16.8461
CACUGGG	chr3:133489290-133489511(+)$1	221	118	125	13.0769
CCCUAGG	chr19:49119074-49119303(-)$1	229	94	101	12.6923
CCCUGGC	chr22:45898725-45899046(+)$1	321	25	32	12.3076
CCCUGCG	chr5:150646272-150646549(+)$1	277	158	165	12.6153
UCCUGGG	chr11:74660213-74660541(+)$1	328	261	268	12.9230
CCCUGUG	chr16:88713408-88713673(-)$1	265	38	45	12.9230
CCCUGGG	chr19:39218485-39218761(+)$1	276	189	196	16.8461
CCCUGGG	chr1:43396198-43396477(-)$1	279	128	135	16.8461
GCCUGGG	chr19:8550517-8550811(+)$1	294	59	66	13.0769
CCCUGGG	chr10:97376161-97376402(-)$1	241	175	182	16.8461
CACUGGG	chr6:170844299-170844571(-)$1	272	185	192	13.0769
UCCUGGG	chr6:122792743-122793006(-)$1	263	134	141	12.9230
CGCUGGG	chr8:126017666-126017886(+)$1	220	50	57	13.1538
CCCCGGG	chr6:29910944-29911145(+)$1	201	37	44	12.9999
CUCUGGG	chr19:8368648-8368893(-)$1	245	0	7	13.3076
CCCGGGG	chr11:64084465-64084716(-)$1	251	10	17	12.9230
UCCUGGG	chr20:61452431-61452669(+)$1	238	2	9	12.9230
CCCUGGG	chr2:3523045-3523317(-)$1	272	24	31	16.8461
CCCCGGG	chr17:80050755-80050983(-)$1	228	59	66	12.9999
CCCUAGG	chr14:94849458-94849677(-)$1	219	6	13	12.6923
CCCAGGG	chr12:57592151-57592428(+)$1	277	67	74	12.9999
CUCUGGG	chr9:124086732-124086974(+)$1	242	210	217	13.3076
CCCGGGG	chr5:137910833-137911077(-)$1	244	122	129	12.9230
CCCAGGG	chr7:44621612-44621917(-)$1	305	191	198	12.9999
GCCUGGG	chr2:21266635-21266875(-)$1	240	211	218	13.0769
CCCAGGG	chr3:133467247-133467500(+)$1	253	3	10	12.9999
CGCUGGG	chr22:24236619-24236866(+)$1	247	203	210	13.1538
CACUGGG	chr17:41173851-41174111(-)$1	260	198	205	13.0769
CCCUCGG	chr19:1918031-1918350(+)$1	319	106	113	12.7692
CCCUGGG	chr11:6639909-6640163(-)$1	254	37	44	16.8461
CCCUAGG	chr2:20402473-20402708(-)$1	235	6	13	12.6923
CCCCGGG	chr19:17416869-17417140(+)$1	271	115	122	12.9999
CUCUGGG	chr2:47136164-47136407(-)$1	243	142	149	13.3076
CGCUGGG	chr6:32821057-32821384(-)$1	327	160	167	13.1538
CCCUGGU	chr1:116946955-116947206(+)$1	251	208	215	12.2307
CCCUGGG	chr3:184049166-184049444(+)$1	278	106	113	16.8461
CCCUGGC	chr15:72491971-72492197(-)$1	226	158	165	12.3076
CCCUGGG	chr11:1776035-1776241(-)$1	206	130	137	16.8461
CCCUGGG	chr11:116707703-116707918(-)$1	215	92	99	16.8461
CCCGGGG	chr7:127344838-127345094(+)$1	256	127	134	12.9230
CCCUGGA	chr1:156105682-156105970(+)$1	288	175	182	12.2307
CCCUGUG	chr7:75608726-75608961(+)$1	235	21	28	12.9230
CCCAGGG	chr9:124079310-124079568(+)$1	258	111	118	12.9999
CUCUGGG	chr22:50728846-50729091(-)$1	245	24	31	13.3076
CGCUGGG	chr21:46285219-46285439(-)$1	220	210	217	13.1538
CCCCGGG	chr1:23346177-23346465(+)$1	288	121	128	12.9999
CCCUCGG	chr17:7387943-7388198(+)$1	255	158	165	12.7692
CCCUGCG	chr6:31827471-31827727(-)$1	256	17	24	12.6153
CUCUGGG	chr12:9230255-9230478(-)$1	223	151	158	13.3076

#otherMatches

#Struct PSSM
ddbb]cc	chr19:51856285-51856517(-)$1	232	150	157	12.9230
c::JJJJ	chr9:140136982-140137226(+)$1	244	100	107	16.8461
ddddddd	chr6:26199222-26199461(-)$1	239	67	74	12.9230
BBBB{GG	chr2:232319871-232320078(-)$1	207	14	21	12.9230
HHHMMMM	chr5:149786343-149786622(-)$1	279	54	61	16.8461
sseeeee	chr3:58064347-58064590(+)$1	243	116	123	12.9230
c"""ccc	chr2:216300323-216300536(-)$1	213	57	64	13.0769
eeeeaee	chr12:125298740-125298981(-)$1	241	97	104	12.7692
:BB{GGG	chr5:149826264-149826576(-)$1	312	30	37	12.9230
ECCC{HH	chr19:39138360-39138649(+)$1	289	163	170	13.0769
dd[bb[a	chr22:24109479-24109810(-)$1	331	73	80	12.7692
ooooccc	chr1:64101807-64102116(+)$1	309	267	274	12.5384
GGGGGGG	chr16:30081360-30081623(+)$1	263	18	25	13.0769
eeeeEEE	chrX:152966315-152966531(-)$1	216	20	27	13.3076
CCC}BB}	chr11:46741254-46741510(+)$1	256	162	169	13.0769
HHHHHHH	chr2:74691958-74692241(-)$1	283	27	34	16.8461
::::eee	chr3:133489290-133489511(+)$1	221	118	125	13.0769
cc:::ff	chr19:49119074-49119303(-)$1	229	94	101	12.6923
[eeeee!	chr22:45898725-45899046(+)$1	321	25	32	12.3076
nnccc]c	chr5:150646272-150646549(+)$1	277	158	165	12.6153
::::iii	chr11:74660213-74660541(+)$1	328	261	268	12.9230
JJJJJJJ	chr16:88713408-88713673(-)$1	265	38	45	12.9230
BCCCJJJ	chr19:39218485-39218761(+)$1	276	189	196	16.8461
e:ddddc	chr1:43396198-43396477(-)$1	279	128	135	16.8461
EEE{EEE	chr19:8550517-8550811(+)$1	294	59	66	13.0769
ggggccc	chr10:97376161-97376402(-)$1	241	175	182	16.8461
!!fffff	chr6:170844299-170844571(-)$1	272	185	192	13.0769
dd[ffff	chr6:122792743-122793006(-)$1	263	134	141	12.9230
eeennnn	chr8:126017666-126017886(+)$1	220	50	57	13.1538
=======	chr6:29910944-29911145(+)$1	201	37	44	12.9999
:FFFFFF	chr19:8368648-8368893(-)$1	245	0	7	13.3076
ddddppp	chr11:64084465-64084716(-)$1	251	10	17	12.9230
DDDD{DD	chr20:61452431-61452669(+)$1	238	2	9	12.9230
ee:eeee	chr2:3523045-3523317(-)$1	272	24	31	16.8461
fffff]c	chr17:80050755-80050983(-)$1	228	59	66	12.9999
::a[fff	chr14:94849458-94849677(-)$1	219	6	13	12.6923
ccc:ddd	chr12:57592151-57592428(+)$1	277	67	74	12.9999
rrrgggg	chr9:124086732-124086974(+)$1	242	210	217	13.3076
JJJJJJJ	chr5:137910833-137911077(-)$1	244	122	129	12.9230
CCC:ddd	chr7:44621612-44621917(-)$1	305	191	198	12.9999
ppppppd	chr2:21266635-21266875(-)$1	240	211	218	13.0769
::eeeee	chr3:133467247-133467500(+)$1	253	3	10	12.9999
BFFFFFF	chr22:24236619-24236866(+)$1	247	203	210	13.1538
eeee[ab	chr17:41173851-41174111(-)$1	260	198	205	13.0769
ooooocc	chr19:1918031-1918350(+)$1	319	106	113	12.7692
HHHHKKE	chr11:6639909-6640163(-)$1	254	37	44	16.8461
fffffff	chr2:20402473-20402708(-)$1	235	6	13	12.6923
=======	chr19:17416869-17417140(+)$1	271	115	122	12.9999
ggggggd	chr2:47136164-47136407(-)$1	243	142	149	13.3076
]bb]ddd	chr6:32821057-32821384(-)$1	327	160	167	13.1538
f22bbff	chr1:116946955-116947206(+)$1	251	208	215	12.2307
:ccc[dd	chr3:184049166-184049444(+)$1	278	106	113	16.8461
b[dddda	chr15:72491971-72492197(-)$1	226	158	165	12.3076
HHBBddd	chr11:1776035-1776241(-)$1	206	130	137	16.8461
nneeeee	chr11:116707703-116707918(-)$1	215	92	99	16.8461
=22bb]a	chr7:127344838-127345094(+)$1	256	127	134	12.9230
ceeeeeb	chr1:156105682-156105970(+)$1	288	175	182	12.2307
DDDKKEE	chr7:75608726-75608961(+)$1	235	21	28	12.9230
oooeeee	chr9:124079310-124079568(+)$1	258	111	118	12.9999
%%%%iii	chr22:50728846-50729091(-)$1	245	24	31	13.3076
~BB}CCC	chr21:46285219-46285439(-)$1	220	210	217	13.1538
GGG:::f	chr1:23346177-23346465(+)$1	288	121	128	12.9999
ddmmmmd	chr17:7387943-7388198(+)$1	255	158	165	12.7692
cc[cccb	chr6:31827471-31827727(-)$1	256	17	24	12.6153
iiiiiii	chr12:9230255-9230478(-)$1	223	151	158	13.3076

#DB
)))).))	chr19:51856285-51856517(-)$1	1	150	157	12.9230
)..((((	chr9:140136982-140137226(+)$1	1	100	107	16.8461
(((((((	chr6:26199222-26199461(-)$1	1	67	74	12.9230
((((.((	chr2:232319871-232320078(-)$1	1	14	21	12.9230
(((....	chr5:149786343-149786622(-)$1	1	54	61	16.8461
..)))))	chr3:58064347-58064590(+)$1	1	116	123	12.9230
(...(((	chr2:216300323-216300536(-)$1	1	57	64	13.0769
)))))))	chr12:125298740-125298981(-)$1	1	97	104	12.7692
.((.(((	chr5:149826264-149826576(-)$1	1	30	37	12.9230
((((.((	chr19:39138360-39138649(+)$1	1	163	170	13.0769
((.((.(	chr22:24109479-24109810(-)$1	1	73	80	12.7692
....)))	chr1:64101807-64102116(+)$1	1	267	274	12.5384
(((((((	chr16:30081360-30081623(+)$1	1	18	25	13.0769
))))(((	chrX:152966315-152966531(-)$1	1	20	27	13.3076
))).)).	chr11:46741254-46741510(+)$1	1	162	169	13.0769
(((((((	chr2:74691958-74692241(-)$1	1	27	34	16.8461
....(((	chr3:133489290-133489511(+)$1	1	118	125	13.0769
))...((	chr19:49119074-49119303(-)$1	1	94	101	12.6923
.(((((.	chr22:45898725-45899046(+)$1	1	25	32	12.3076
..))).)	chr5:150646272-150646549(+)$1	1	158	165	12.6153
....(((	chr11:74660213-74660541(+)$1	1	261	268	12.9230
(((((((	chr16:88713408-88713673(-)$1	1	38	45	12.9230
)))))))	chr19:39218485-39218761(+)$1	1	189	196	16.8461
).(((((	chr1:43396198-43396477(-)$1	1	128	135	16.8461
(((.(((	chr19:8550517-8550811(+)$1	1	59	66	13.0769
(((((((	chr10:97376161-97376402(-)$1	1	175	182	16.8461
..(((((	chr6:170844299-170844571(-)$1	1	185	192	13.0769
((.((((	chr6:122792743-122793006(-)$1	1	134	141	12.9230
(((....	chr8:126017666-126017886(+)$1	1	50	57	13.1538
(((((((	chr6:29910944-29911145(+)$1	1	37	44	12.9999
.((((((	chr19:8368648-8368893(-)$1	1	0	7	13.3076
((((...	chr11:64084465-64084716(-)$1	1	10	17	12.9230
((((.((	chr20:61452431-61452669(+)$1	1	2	9	12.9230
)).((((	chr2:3523045-3523317(-)$1	1	24	31	16.8461
))))).)	chr17:80050755-80050983(-)$1	1	59	66	12.9999
..(.(((	chr14:94849458-94849677(-)$1	1	6	13	12.6923
))).(((	chr12:57592151-57592428(+)$1	1	67	74	12.9999
...))))	chr9:124086732-124086974(+)$1	1	210	217	13.3076
(((((((	chr5:137910833-137911077(-)$1	1	122	129	12.9230
))).(((	chr7:44621612-44621917(-)$1	1	191	198	12.9999
......)	chr2:21266635-21266875(-)$1	1	211	218	13.0769
..(((((	chr3:133467247-133467500(+)$1	1	3	10	12.9999
)))))))	chr22:24236619-24236866(+)$1	1	203	210	13.1538
((((.((	chr17:41173851-41174111(-)$1	1	198	205	13.0769
.....))	chr19:1918031-1918350(+)$1	1	106	113	12.7692
((((..(	chr11:6639909-6640163(-)$1	1	37	44	16.8461
(((((((	chr2:20402473-20402708(-)$1	1	6	13	12.6923
(((((((	chr19:17416869-17417140(+)$1	1	115	122	12.9999
(((((((	chr2:47136164-47136407(-)$1	1	142	149	13.3076
.)).)))	chr6:32821057-32821384(-)$1	1	160	167	13.1538
)..))))	chr1:116946955-116947206(+)$1	1	208	215	12.2307
.(((.((	chr3:184049166-184049444(+)$1	1	106	113	16.8461
(.(((((	chr15:72491971-72492197(-)$1	1	158	165	12.3076
(((((((	chr11:1776035-1776241(-)$1	1	130	137	16.8461
..)))))	chr11:116707703-116707918(-)$1	1	92	99	16.8461
)..)).)	chr7:127344838-127345094(+)$1	1	127	134	12.9230
)))))))	chr1:156105682-156105970(+)$1	1	175	182	12.2307
(((..((	chr7:75608726-75608961(+)$1	1	21	28	12.9230
...))))	chr9:124079310-124079568(+)$1	1	111	118	12.9999
....(((	chr22:50728846-50729091(-)$1	1	24	31	13.3076
.)).)))	chr21:46285219-46285439(-)$1	1	210	217	13.1538
)))...(	chr1:23346177-23346465(+)$1	1	121	128	12.9999
((....)	chr17:7387943-7388198(+)$1	1	158	165	12.7692
((.((((	chr6:31827471-31827727(-)$1	1	17	24	12.6153
(((((((	chr12:9230255-9230478(-)$1	1	151	158	13.3076

#PSSM
C : 0.83	G : 0.09	U : 0.06	c : 0.01	
C : 0.78	U : 0.09	G : 0.06	A : 0.04	c : 0.01	
C : 0.98	c : 0.01	
U : 0.81	C : 0.06	A : 0.06	G : 0.04	u : 0.01	
G : 0.87	C : 0.04	A : 0.04	c : 0.01	U : 0.01	
G : 0.86	U : 0.09	C : 0.03	g : 0.01	
G : 0.92	C : 0.03	g : 0.01	U : 0.01	A : 0.01	

#score	883.4615384615372
#seq	65
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_UTR_m3_run1.nuc.txt

#NT
Ucucucccu	chr6:30611197-30611445(+)$1	248	8	17	17.8823
ucccucccg	chr1:20812549-20812798(-)$1	249	187	196	18.9607
ucgcucccu	chr11:2159906-2160120(-)$1	214	137	146	17.6862
UCCCUCCAU	chr16:30996623-30996903(+)$1	280	30	39	17.5882
UCCCUCCCU	chr11:66011715-66011991(+)$1	276	123	132	22.1960
UCCCUCCCC	chr22:36678364-36678622(-)$1	258	110	119	19.6470
ucccgcccu	chr12:53846029-53846265(+)$1	236	72	81	18.0784
uuccucccu	chr17:79880206-79880515(-)$1	309	125	134	18.0784
uuccucccu	chr15:74006057-74006306(+)$1	249	197	206	18.0784
ACCCUCCCC	chr17:38248957-38249234(-)$1	277	128	137	15.9215
GCCCUCCCU	chr19:49464231-49464521(+)$1	290	203	212	18.7647
ucccugccu	chr1:20812519-20812734(-)$1	215	61	70	17.7843
UCCCUCCCC	chr22:36678444-36678714(-)$1	270	202	211	19.6470
UCCCCCCCC	chr1:27107249-27107485(+)$1	236	13	22	15.5294
ucccucccu	chr14:23775904-23776189(+)$1	285	140	149	22.1960
UCCCUCCCC	chr6:29913253-29913483(+)$1	230	170	179	19.6470
ugccucccu	chr1:20812325-20812538(-)$1	213	64	73	18.0784
ucccucccu	chr3:185349004-185349295(+)$1	291	231	240	22.1960
UCCCUCCCU	chr10:102732380-102732668(+)$1	288	40	49	22.1960
UCCCUGCCU	chr7:107642218-107642478(-)$1	260	121	130	17.7843
CCCCUCCCU	chr2:27264185-27264447(+)$1	262	131	140	19.0588
ccccucccc	chr9:132900691-132900955(+)$1	264	40	49	16.5098
UCCCACCCC	chr19:14203186-14203449(-)$1	263	123	132	15.6274
ucccgcccu	chr12:53845937-53846182(+)$1	245	164	173	18.0784
UCCCUCCAU	chr19:45422435-45422686(+)$1	251	121	130	17.5882
UCCCCCCCU	chr19:12841412-12841687(-)$1	275	119	128	18.0784
UUCCUCCCU	chr8:43055235-43055547(+)$1	312	151	160	18.0784
UCCCUCCCA	chr11:119205535-119205852(+)$1	317	54	63	18.8627
GCCCUCCCU	chr17:79894891-79895209(-)$1	318	208	217	18.7647
UCUCUCCCU	chr7:105752512-105752839(-)$1	327	162	171	17.8823
ccccucccu	chr19:438926-439223(-)$1	297	1	10	19.0588
CCCCUCCCU	chr7:143087830-143088117(+)$1	287	60	69	19.0588
UCCCUCCCU	chrX:133930290-133930687(-)$1	397	117	126	22.1960
ugccucccu	chr1:20812204-20812483(-)$1	279	9	18	18.0784
CCCCUCCCU	chr16:3119319-3119574(+)$1	255	86	95	19.0588
UCCCUCCCC	chr6:29913397-29913638(+)$1	241	26	35	19.6470
UGCCUCCCC	chr7:137564467-137564694(-)$1	227	169	178	15.5294
ucccucccu	chr17:7311438-7311679(+)$1	241	59	68	22.1960
ucccacccc	chr20:60550558-60550862(-)$1	304	113	122	15.6274
CCCCUCCCU	chr1:155260159-155260435(-)$1	276	77	86	19.0588
GCCCUCCCA	chr5:150408069-150408401(+)$1	332	164	173	15.4313
UCCCUCCCU	chr1:153579757-153580025(-)$1	268	194	203	22.1960
UCCCUCCCU	chr10:82280372-82280599(+)$1	227	76	85	22.1960
UCCCUCCCG	chr17:4848984-4849205(-)$1	221	183	192	18.9607
UCCCUCCCG	chr2:171822198-171822532(+)$1	334	238	247	18.9607
UCCCUGCCU	chr11:67273965-67274255(-)$1	290	184	193	17.7843
CCCCUCCCU	chr11:65622346-65622582(-)$1	236	190	199	19.0588
GCCCUCCCU	chr11:119532625-119532911(-)$1	286	116	125	18.7647
UCCCACCCU	chr17:79826435-79826685(-)$1	250	47	56	18.1764
ucccucccu	chr10:102283766-102284085(-)$1	319	115	124	22.1960

#otherMatches

#Struct PSSM
dd>>>>>>>	chr14:24658433-24658713(-)$1	280	119	128	17.8823
:::::::::	chr6:30611197-30611445(+)$1	248	8	17	17.8823
:::::::::	chr1:20812549-20812798(-)$1	249	187	196	18.9607
:::::::::	chr11:2159906-2160120(-)$1	214	137	146	17.6862
%%bbppppp	chr16:30996623-30996903(+)$1	280	30	39	17.5882
QQQQQFFFF	chr11:66011715-66011991(+)$1	276	123	132	22.1960
{HHHHHHHH	chr22:36678364-36678622(-)$1	258	110	119	19.6470
nnnnccc::	chr12:53846029-53846265(+)$1	236	72	81	18.0784
:::::::::	chr17:79880206-79880515(-)$1	309	125	134	18.0784
obb]dddd]	chr15:74006057-74006306(+)$1	249	197	206	18.0784
::bbooooo	chr17:38248957-38249234(-)$1	277	128	137	15.9215
bb%%%%%%d	chr19:49464231-49464521(+)$1	290	203	212	18.7647
>>>>dddd:	chr1:20812519-20812734(-)$1	215	61	70	17.7843
CC::::eee	chr22:36678444-36678714(-)$1	270	202	211	19.6470
ttttttttt	chr1:27107249-27107485(+)$1	236	13	22	15.5294
EEEKKDDDD	chr14:23775904-23776189(+)$1	285	140	149	22.1960
:::::::::	chr6:29913253-29913483(+)$1	230	170	179	19.6470
DDD::::cc	chr1:20812325-20812538(-)$1	213	64	73	18.0784
:::::::::	chr3:185349004-185349295(+)$1	291	231	240	22.1960
ggggg!!bb	chr10:102732380-102732668(+)$1	288	40	49	22.1960
"""cccooo	chr7:107642218-107642478(-)$1	260	121	130	17.7843
b::::::::	chr2:27264185-27264447(+)$1	262	131	140	19.0588
:::::::::	chr9:132900691-132900955(+)$1	264	40	49	16.5098
+++++++++	chr19:14203186-14203449(-)$1	263	123	132	15.6274
????BB:::	chr12:53845937-53846182(+)$1	245	164	173	18.0784
mmdddd555	chr19:45422435-45422686(+)$1	251	121	130	17.5882
bb7777777	chr19:12841412-12841687(-)$1	275	119	128	18.0784
:::::::::	chr8:43055235-43055547(+)$1	312	151	160	18.0784
ttttttggg	chr11:119205535-119205852(+)$1	317	54	63	18.8627
ccc55555b	chr17:79894891-79895209(-)$1	318	208	217	18.7647
>>>>>>>>>	chr7:105752512-105752839(-)$1	327	162	171	17.8823
:::::::FF	chr19:438926-439223(-)$1	297	1	10	19.0588
^^^^^^^dd	chr7:143087830-143088117(+)$1	287	60	69	19.0588
:::::::::	chrX:133930290-133930687(-)$1	397	117	126	22.1960
FFF::::cc	chr1:20812204-20812483(-)$1	279	9	18	18.0784
qqqqqqqqd	chr16:3119319-3119574(+)$1	255	86	95	19.0588
:::::::::	chr6:29913397-29913638(+)$1	241	26	35	19.6470
FDDDDYYDD	chr7:137564467-137564694(-)$1	227	169	178	15.5294
mmhhhhhhh	chr17:7311438-7311679(+)$1	241	59	68	22.1960
::EEEEEKK	chr20:60550558-60550862(-)$1	304	113	122	15.6274
ccuuuuuuu	chr1:155260159-155260435(-)$1	276	77	86	19.0588
FFFFDDDDE	chr5:150408069-150408401(+)$1	332	164	173	15.4313
ggggnnnnn	chr1:153579757-153580025(-)$1	268	194	203	22.1960
:::::::::	chr10:82280372-82280599(+)$1	227	76	85	22.1960
::::::::G	chr17:4848984-4849205(-)$1	221	183	192	18.9607
zzzzzzzzz	chr2:171822198-171822532(+)$1	334	238	247	18.9607
EE}DDDDCC	chr11:67273965-67274255(-)$1	290	184	193	17.7843
[bb!!bbpp	chr11:65622346-65622582(-)$1	236	190	199	19.0588
FF:::::::	chr11:119532625-119532911(-)$1	286	116	125	18.7647
##ccc####	chr17:79826435-79826685(-)$1	250	47	56	18.1764
>>>>>>>>c	chr10:102283766-102284085(-)$1	319	115	124	22.1960

#DB
)).......	chr14:24658433-24658713(-)$1	1	119	128	17.8823
.........	chr6:30611197-30611445(+)$1	1	8	17	17.8823
.........	chr1:20812549-20812798(-)$1	1	187	196	18.9607
.........	chr11:2159906-2160120(-)$1	1	137	146	17.6862
..((.....	chr16:30996623-30996903(+)$1	1	30	39	17.5882
.....((((	chr11:66011715-66011991(+)$1	1	123	132	22.1960
.((((((((	chr22:36678364-36678622(-)$1	1	110	119	19.6470
....)))..	chr12:53846029-53846265(+)$1	1	72	81	18.0784
.........	chr17:79880206-79880515(-)$1	1	125	134	18.0784
.)).)))).	chr15:74006057-74006306(+)$1	1	197	206	18.0784
..((.....	chr17:38248957-38249234(-)$1	1	128	137	15.9215
((......(	chr19:49464231-49464521(+)$1	1	203	212	18.7647
....)))).	chr1:20812519-20812734(-)$1	1	61	70	17.7843
))....(((	chr22:36678444-36678714(-)$1	1	202	211	19.6470
.........	chr1:27107249-27107485(+)$1	1	13	22	15.5294
(((..((((	chr14:23775904-23776189(+)$1	1	140	149	22.1960
.........	chr6:29913253-29913483(+)$1	1	170	179	19.6470
(((....((	chr1:20812325-20812538(-)$1	1	64	73	18.0784
.........	chr3:185349004-185349295(+)$1	1	231	240	22.1960
(((((..((	chr10:102732380-102732668(+)$1	1	40	49	22.1960
...(((...	chr7:107642218-107642478(-)$1	1	121	130	17.7843
)........	chr2:27264185-27264447(+)$1	1	131	140	19.0588
.........	chr9:132900691-132900955(+)$1	1	40	49	16.5098
.........	chr19:14203186-14203449(-)$1	1	123	132	15.6274
....))...	chr12:53845937-53846182(+)$1	1	164	173	18.0784
..))))...	chr19:45422435-45422686(+)$1	1	121	130	17.5882
)).......	chr19:12841412-12841687(-)$1	1	119	128	18.0784
.........	chr8:43055235-43055547(+)$1	1	151	160	18.0784
......)))	chr11:119205535-119205852(+)$1	1	54	63	18.8627
))).....)	chr17:79894891-79895209(-)$1	1	208	217	18.7647
.........	chr7:105752512-105752839(-)$1	1	162	171	17.8823
.......((	chr19:438926-439223(-)$1	1	1	10	19.0588
.......))	chr7:143087830-143088117(+)$1	1	60	69	19.0588
.........	chrX:133930290-133930687(-)$1	1	117	126	22.1960
(((....((	chr1:20812204-20812483(-)$1	1	9	18	18.0784
........)	chr16:3119319-3119574(+)$1	1	86	95	19.0588
.........	chr6:29913397-29913638(+)$1	1	26	35	19.6470
)))))..))	chr7:137564467-137564694(-)$1	1	169	178	15.5294
..)))))))	chr17:7311438-7311679(+)$1	1	59	68	22.1960
..(((((..	chr20:60550558-60550862(-)$1	1	113	122	15.6274
((.......	chr1:155260159-155260435(-)$1	1	77	86	19.0588
(((((((((	chr5:150408069-150408401(+)$1	1	164	173	15.4313
((((.....	chr1:153579757-153580025(-)$1	1	194	203	22.1960
.........	chr10:82280372-82280599(+)$1	1	76	85	22.1960
........)	chr17:4848984-4849205(-)$1	1	183	192	18.9607
.........	chr2:171822198-171822532(+)$1	1	238	247	18.9607
)).))))))	chr11:67273965-67274255(-)$1	1	184	193	17.7843
.((..((..	chr11:65622346-65622582(-)$1	1	190	199	19.0588
((.......	chr11:119532625-119532911(-)$1	1	116	125	18.7647
..(((....	chr17:79826435-79826685(-)$1	1	47	56	18.1764
........)	chr10:102283766-102284085(-)$1	1	115	124	22.1960

#PSSM
U : 0.49	u : 0.27	C : 0.09	G : 0.07	c : 0.03	A : 0.01	
C : 0.62	c : 0.25	u : 0.03	g : 0.03	U : 0.01	G : 0.01	
C : 0.62	c : 0.29	U : 0.03	u : 0.01	g : 0.01	
C : 0.66	c : 0.33	
U : 0.58	u : 0.27	g : 0.03	C : 0.03	A : 0.03	a : 0.01	
C : 0.62	c : 0.31	G : 0.03	g : 0.01	
C : 0.66	c : 0.33	
C : 0.62	c : 0.33	A : 0.03	
U : 0.43	u : 0.27	C : 0.15	c : 0.03	A : 0.03	G : 0.03	g : 0.01	

#score	957.5882352941177
#seq	51
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_transcript_m3_run2.nuc.txt

#NT
UGGAG	chr10:91352411-91352620(-)$1	209	76	81	15.0000
UGGAG	chr20:25202117-25202373(+)$1	256	246	251	15.0000
UGGAG	chr11:75046050-75046286(-)$1	236	74	79	15.0000
UGGAG	chr22:20073993-20074254(+)$1	261	73	78	15.0000
UGGAG	chr1:156390112-156390403(-)$1	291	226	231	15.0000
UGGAG	chr5:149111447-149111715(+)$1	268	244	249	15.0000
UGGAG	chr1:41222595-41222836(+)$1	241	103	108	15.0000
UGGAG	chr17:56408584-56408788(-)$1	204	52	57	15.0000
UGGAG	chr14:100575817-100576083(+)$1	266	135	140	15.0000
UGGAG	chr22:20073462-20073716(+)$1	254	25	30	15.0000
UGGAG	chr12:58218325-58218533(-)$1	208	131	136	15.0000
UGGAG	chr22:42296449-42296707(+)$1	258	2	7	15.0000
UGGAG	chr10:75863698-75863962(+)$1	264	46	51	15.0000
UGGAG	chrX:139006219-139006459(-)$1	240	144	149	15.0000
UGGAG	chr7:1062819-1063117(-)$1	298	107	112	15.0000
UGGAG	chr16:14397788-14397995(+)$1	207	27	32	15.0000
UGGAG	chr9:4850148-4850410(+)$1	262	74	79	15.0000
UGGAG	chr19:40788360-40788604(-)$1	244	222	227	15.0000
UGGAG	chrX:152955071-152955323(+)$1	252	15	20	15.0000
UGGAG	chr2:242707056-242707337(+)$1	281	131	136	15.0000
uggag	chr6:155174429-155174669(+)$1	240	137	142	15.0000
UGGAG	chr3:195426224-195426453(+)$1	229	32	37	15.0000
UGGAG	chr9:111808449-111808675(-)$1	226	96	101	15.0000
UGGAG	chr6:32938679-32938927(+)$1	248	204	209	15.0000
UGGAg	chr8:144815562-144815817(-)$1	255	93	98	15.0000
UGGAG	chr7:127732464-127732717(+)$1	253	212	217	15.0000
UGGAG	chr9:140006577-140006827(-)$1	250	3	8	15.0000
UGGAG	chr9:131910360-131910617(+)$1	257	247	252	15.0000
UGGAG	chr17:56408505-56408708(-)$1	203	73	78	15.0000
UGGAG	chr1:156391240-156391518(-)$1	278	191	196	15.0000
UGGAG	chr19:46142055-46142293(-)$1	238	89	94	15.0000
UGGAG	chrX:118780633-118780854(-)$1	221	190	195	15.0000
UGGAG	chr19:2271007-2271276(+)$1	269	204	209	15.0000
UGGAG	chr22:20077251-20077500(+)$1	249	1	6	15.0000
UGGAG	chr9:134141603-134141850(-)$1	247	71	76	15.0000
UGGAG	chrX:139006286-139006557(-)$1	271	242	247	15.0000
UGGAG	chr17:37043194-37043472(+)$1	278	155	160	15.0000
uggag	chr19:46523281-46523521(+)$1	240	132	137	15.0000
uggag	chr9:101558619-101558833(-)$1	214	145	150	15.0000
UGGAG	chr16:15238712-15238951(-)$1	239	88	93	15.0000
UGGAG	chr9:96939005-96939281(+)$1	276	114	119	15.0000
UGGAG	chr16:15247969-15248288(-)$1	319	237	242	15.0000
UGGAG	chr17:27188513-27188719(-)$1	206	174	179	15.0000
UGGAG	chr17:56408986-56409232(-)$1	246	157	162	15.0000

#otherMatches

#Struct PSSM
ddd]b	chr2:97535541-97535806(-)$1	265	176	181	15.0000
nnnnc	chr10:91352411-91352620(-)$1	209	76	81	15.0000
BB}DD	chr20:25202117-25202373(+)$1	256	246	251	15.0000
=====	chr11:75046050-75046286(-)$1	236	74	79	15.0000
b[fff	chr22:20073993-20074254(+)$1	261	73	78	15.0000
mmma]	chr1:156390112-156390403(-)$1	291	226	231	15.0000
III}C	chr5:149111447-149111715(+)$1	268	244	249	15.0000
hhh]c	chr1:41222595-41222836(+)$1	241	103	108	15.0000
hhlll	chr17:56408584-56408788(-)$1	204	52	57	15.0000
]dddd	chr14:100575817-100576083(+)$1	266	135	140	15.0000
FFFFF	chr22:20073462-20073716(+)$1	254	25	30	15.0000
eee22	chr12:58218325-58218533(-)$1	208	131	136	15.0000
:ffff	chr22:42296449-42296707(+)$1	258	2	7	15.0000
LDDDD	chr10:75863698-75863962(+)$1	264	46	51	15.0000
ddd]f	chrX:139006219-139006459(-)$1	240	144	149	15.0000
fffff	chr7:1062819-1063117(-)$1	298	107	112	15.0000
mmmee	chr16:14397788-14397995(+)$1	207	27	32	15.0000
ffff!	chr9:4850148-4850410(+)$1	262	74	79	15.0000
:DDDD	chr19:40788360-40788604(-)$1	244	222	227	15.0000
{CCCD	chrX:152955071-152955323(+)$1	252	15	20	15.0000
ii!!d	chr2:242707056-242707337(+)$1	281	131	136	15.0000
dd]ff	chr6:155174429-155174669(+)$1	240	137	142	15.0000
[cccp	chr3:195426224-195426453(+)$1	229	32	37	15.0000
=====	chr9:111808449-111808675(-)$1	226	96	101	15.0000
eee[f	chr6:32938679-32938927(+)$1	248	204	209	15.0000
6666h	chr8:144815562-144815817(-)$1	255	93	98	15.0000
YCCC?	chr7:127732464-127732717(+)$1	253	212	217	15.0000
EEE{E	chr9:140006577-140006827(-)$1	250	3	8	15.0000
JJJJJ	chr9:131910360-131910617(+)$1	257	247	252	15.0000
mma22	chr17:56408505-56408708(-)$1	203	73	78	15.0000
d]ddd	chr1:156391240-156391518(-)$1	278	191	196	15.0000
e]ccc	chr19:46142055-46142293(-)$1	238	89	94	15.0000
[ccc[	chrX:118780633-118780854(-)$1	221	190	195	15.0000
c]eee	chr19:2271007-2271276(+)$1	269	204	209	15.0000
dddd!	chr22:20077251-20077500(+)$1	249	1	6	15.0000
JJ::d	chr9:134141603-134141850(-)$1	247	71	76	15.0000
ddd]f	chrX:139006286-139006557(-)$1	271	242	247	15.0000
ddd22	chr17:37043194-37043472(+)$1	278	155	160	15.0000
ee[bb	chr19:46523281-46523521(+)$1	240	132	137	15.0000
ffff=	chr9:101558619-101558833(-)$1	214	145	150	15.0000
FLLLE	chr16:15238712-15238951(-)$1	239	88	93	15.0000
ggggg	chr9:96939005-96939281(+)$1	276	114	119	15.0000
}FFFF	chr16:15247969-15248288(-)$1	319	237	242	15.0000
CCCCC	chr17:27188513-27188719(-)$1	206	174	179	15.0000
rrrrr	chr17:56408986-56409232(-)$1	246	157	162	15.0000

#DB
))).)	chr2:97535541-97535806(-)$1	1	176	181	15.0000
....)	chr10:91352411-91352620(-)$1	1	76	81	15.0000
)).))	chr20:25202117-25202373(+)$1	1	246	251	15.0000
(((((	chr11:75046050-75046286(-)$1	1	74	79	15.0000
(.(((	chr22:20073993-20074254(+)$1	1	73	78	15.0000
...).	chr1:156390112-156390403(-)$1	1	226	231	15.0000
))).)	chr5:149111447-149111715(+)$1	1	244	249	15.0000
))).)	chr1:41222595-41222836(+)$1	1	103	108	15.0000
((...	chr17:56408584-56408788(-)$1	1	52	57	15.0000
.))))	chr14:100575817-100576083(+)$1	1	135	140	15.0000
(((((	chr22:20073462-20073716(+)$1	1	25	30	15.0000
)))..	chr12:58218325-58218533(-)$1	1	131	136	15.0000
.((((	chr22:42296449-42296707(+)$1	1	2	7	15.0000
.((((	chr10:75863698-75863962(+)$1	1	46	51	15.0000
))).)	chrX:139006219-139006459(-)$1	1	144	149	15.0000
)))))	chr7:1062819-1063117(-)$1	1	107	112	15.0000
...))	chr16:14397788-14397995(+)$1	1	27	32	15.0000
((((.	chr9:4850148-4850410(+)$1	1	74	79	15.0000
.))))	chr19:40788360-40788604(-)$1	1	222	227	15.0000
.((((	chrX:152955071-152955323(+)$1	1	15	20	15.0000
((..(	chr2:242707056-242707337(+)$1	1	131	136	15.0000
)).))	chr6:155174429-155174669(+)$1	1	137	142	15.0000
.(((.	chr3:195426224-195426453(+)$1	1	32	37	15.0000
(((((	chr9:111808449-111808675(-)$1	1	96	101	15.0000
(((.(	chr6:32938679-32938927(+)$1	1	204	209	15.0000
....)	chr8:144815562-144815817(-)$1	1	93	98	15.0000
.))).	chr7:127732464-127732717(+)$1	1	212	217	15.0000
(((.(	chr9:140006577-140006827(-)$1	1	3	8	15.0000
)))))	chr9:131910360-131910617(+)$1	1	247	252	15.0000
..)..	chr17:56408505-56408708(-)$1	1	73	78	15.0000
).)))	chr1:156391240-156391518(-)$1	1	191	196	15.0000
).)))	chr19:46142055-46142293(-)$1	1	89	94	15.0000
.(((.	chrX:118780633-118780854(-)$1	1	190	195	15.0000
).)))	chr19:2271007-2271276(+)$1	1	204	209	15.0000
((((.	chr22:20077251-20077500(+)$1	1	1	6	15.0000
((..(	chr9:134141603-134141850(-)$1	1	71	76	15.0000
))).)	chrX:139006286-139006557(-)$1	1	242	247	15.0000
)))..	chr17:37043194-37043472(+)$1	1	155	160	15.0000
((.((	chr19:46523281-46523521(+)$1	1	132	137	15.0000
)))))	chr9:101558619-101558833(-)$1	1	145	150	15.0000
(...(	chr16:15238712-15238951(-)$1	1	88	93	15.0000
(((((	chr9:96939005-96939281(+)$1	1	114	119	15.0000
.))))	chr16:15247969-15248288(-)$1	1	237	242	15.0000
)))))	chr17:27188513-27188719(-)$1	1	174	179	15.0000
.....	chr17:56408986-56409232(-)$1	1	157	162	15.0000

#PSSM
U : 0.93	u : 0.06	
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
A : 0.93	a : 0.06	
G : 0.91	g : 0.08	

#score	675.0000000000001
#seq	45
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_CDS_m1_run1.nuc.txt

#NT
CGCCAAGCCCCUC	chr20:43560907-43561168(+)$1	261	36	49	19.5263
CCCCAACCCUCUC	chr2:242163381-242163646(+)$1	265	112	125	17.2456
CCCUCAGCCUCCC	chr3:47452351-47452586(+)$1	235	59	72	16.9824
CACCCAGCCCCAC	chr19:7706714-7707036(+)$1	322	35	48	21.4561
GGCCCAGCCCCUC	chr8:145112499-145112786(-)$1	287	79	92	20.0526
CUCCCAUCCCCCC	chr22:38014269-38014562(+)$1	293	161	174	19.2631
cccccaccccccc	chr19:15353863-15354116(-)$1	253	96	109	24.1754
CCCCAAGCCCCAC	chr17:80397593-80397885(+)$1	292	14	27	21.3684
CCCCCAAUCCCGC	chr12:57111191-57111461(-)$1	270	4	17	18.5614
CCuccagccccug	chr11:46398630-46398912(+)$1	282	152	165	20.9298
CCCCCACUCCCCC	chr12:57111071-57111323(-)$1	252	4	17	20.4035
CCCCAAGCCCCUG	chr14:55529779-55530048(+)$1	269	75	88	20.8421
CCCCCAGCCCCCC	chr19:48197564-48197970(+)$1	406	143	156	25.8421
CCCCCAACCCCUG	chr16:67576786-67577029(+)$1	243	174	187	22.3333
CCCACAGCCCCCA	chr16:30665998-30666278(+)$1	280	102	115	18.7368
CCCCCACCACCUC	chr12:7045694-7045969(+)$1	275	59	72	21.7192
gccccagccccag	chr3:47452024-47452290(+)$1	266	119	132	19.3508
CCCCCUGCCCAAC	chr6:43472836-43473085(+)$1	249	117	130	17.0701
CCCCCACCCCCAC	chr11:68029577-68029879(-)$1	302	270	283	23.8245
CCCACAGCCCCCC	chr19:15353984-15354350(-)$1	366	170	183	21.8070
CCCACAGCCCCCA	chr3:48461366-48461618(-)$1	252	6	19	18.7368
CCCCCGCCCCCUC	chr5:31526447-31526741(-)$1	294	161	174	22.0701
CCCCCGCCCCCUG	chr1:8420264-8420551(-)$1	287	24	37	19.5263
cccccacccccac	chr19:46393912-46394231(-)$1	319	81	94	23.8245
CCCACAGCCCCUG	chr6:30672814-30673037(-)$1	223	56	69	20.9298
CCCCCAGCCUCUU	chr17:8046775-8047171(-)$1	396	197	210	19.6140
UCCCCAACCCAUC	chr3:184090230-184090538(-)$1	308	58	71	16.4561
CUCCCAGCCCCAC	chr19:17531726-17532042(+)$1	316	177	190	21.5438
CCUCCAGUCCCUC	chr17:7129138-7129570(-)$1	432	243	256	19.7017
AGCCCAGCCCCAC	chr16:30732488-30732743(+)$1	255	116	129	17.6842
CCCCCAGUCCCCC	chr19:36278916-36279194(+)$1	278	151	164	22.0701
CCCCAAGUCCCCC	chr1:10166206-10166559(+)$1	353	287	300	17.9473
cccccagccccuc	chr19:36211831-36212159(+)$1	328	281	294	27.5087
CCUCCGGCCCCUC	chr12:57919471-57919718(+)$1	247	12	25	19.7017
CCCCCUGUCCCUC	chr19:56203140-56203428(+)$1	288	111	124	19.7894
CCCCCAUCCCCAA	chr17:42475016-42475275(-)$1	259	18	31	19.7894
CCCCCACCCCGUC	chr17:45786044-45786361(+)$1	317	17	30	21.2807
CCACCAGCCCCUC	chr6:32083489-32083743(-)$1	254	197	210	23.1228
CCCCCACCACCUC	chr12:7045556-7045813(+)$1	257	197	210	21.7192
CCCACAGCCCCUG	chr6:30672837-30673081(-)$1	244	100	113	20.9298
cccccaccuccug	chr2:69472424-69472716(+)$1	292	37	50	19.2631
UCUCCAGCCCCUC	chr16:67576640-67576893(+)$1	253	108	121	19.5263
gccccggccccuc	chr11:65422121-65422394(-)$1	273	27	40	20.1403
CCUCCAGCCCCUC	chr17:40947056-40947326(+)$1	270	239	252	23.4736
gccccAGCCCUGC	chr16:67233803-67234060(+)$1	257	180	193	16.8070
CCCCCAGCCCCCA	chr19:54969699-54969932(+)$1	233	89	102	22.7719
gccccagccccua	chr1:171526774-171527025(+)$1	251	219	232	20.8421
CCCCCCACCCCUG	chr1:8420434-8420669(-)$1	235	54	67	18.2105
CCCCCUUCUCCUC	chr6:33166922-33167164(-)$1	242	24	37	16.8947
AUcccagccccuc	chr12:122261010-122261313(+)$1	303	209	222	19.6140
CACCCAGCUCCCC	chr1:156347165-156347400(+)$1	235	129	142	17.7719
CCCCCACUCCCCC	chr12:57111343-57111576(-)$1	233	50	63	20.4035
CGCCCACCCCCUC	chr1:205492330-205492635(+)$1	305	163	176	21.9824
CCCCCACCCCCUG	chr1:33236848-33237120(+)$1	272	245	258	23.2982
CCCCCACCACCGC	chr1:153923729-153924002(-)$1	273	134	147	19.1754
gccccggccccuc	chr11:65422194-65422476(-)$1	282	109	122	20.1403

#otherMatches

#Struct PSSM
:::::::::::::	chr12:49445649-49445915(-)$1	266	28	41	18.2982
Ebblllbb:::::	chr20:43560907-43561168(+)$1	261	36	49	19.5263
+++++++++++++	chr2:242163381-242163646(+)$1	265	112	125	17.2456
6666ccc333ddd	chr3:47452351-47452586(+)$1	235	59	72	16.9824
qqqqqqaffffff	chr19:7706714-7707036(+)$1	322	35	48	21.4561
fff::CCCBB{BB	chr8:145112499-145112786(-)$1	287	79	92	20.0526
fffff]ddddacc	chr22:38014269-38014562(+)$1	293	161	174	19.2631
^^^^^^^^^^^^c	chr19:15353863-15354116(-)$1	253	96	109	24.1754
::BBLLLGGGGGG	chr17:80397593-80397885(+)$1	292	14	27	21.3684
hhhh)))))))))	chr12:57111191-57111461(-)$1	270	4	17	18.5614
::::::::::::e	chr11:46398630-46398912(+)$1	282	152	165	20.9298
GGG{A::::::::	chr12:57111071-57111323(-)$1	252	4	17	20.4035
::::::eeeeehh	chr14:55529779-55530048(+)$1	269	75	88	20.8421
mmmmdddd:::::	chr19:48197564-48197970(+)$1	406	143	156	25.8421
cc:::::::::cc	chr16:67576786-67577029(+)$1	243	174	187	22.3333
^^^^dddd:::::	chr16:30665998-30666278(+)$1	280	102	115	18.7368
:::::::::::::	chr12:7045694-7045969(+)$1	275	59	72	21.7192
ddssssssssssd	chr3:47452024-47452290(+)$1	266	119	132	19.3508
555ccc4444ddd	chr6:43472836-43473085(+)$1	249	117	130	17.0701
C::::::::::::	chr11:68029577-68029879(-)$1	302	270	283	23.8245
ooooccc777777	chr19:15353984-15354350(-)$1	366	170	183	21.8070
::::::::::bb[	chr3:48461366-48461618(-)$1	252	6	19	18.7368
I::::::::::::	chr5:31526447-31526741(-)$1	294	161	174	22.0701
GGGGGGGLLLHHH	chr1:8420264-8420551(-)$1	287	24	37	19.5263
gggg!!bb[dddd	chr19:46393912-46394231(-)$1	319	81	94	23.8245
KKEEEEE::::::	chr6:30672814-30673037(-)$1	223	56	69	20.9298
hnnnnnhhhhhhh	chr17:8046775-8047171(-)$1	396	197	210	19.6140
^^^^^^^^^^ddd	chr3:184090230-184090538(-)$1	308	58	71	16.4561
d:::cccoooooo	chr19:17531726-17532042(+)$1	316	177	190	21.5438
____CCCZZZCCC	chr17:7129138-7129570(-)$1	432	243	256	19.7017
bbttttttttttt	chr16:30732488-30732743(+)$1	255	116	129	17.6842
mmmbb]ccc333b	chr19:36278916-36279194(+)$1	278	151	164	22.0701
^^^^^^^^^^^^^	chr1:10166206-10166559(+)$1	353	287	300	17.9473
vvvvddddccc::	chr19:36211831-36212159(+)$1	328	281	294	27.5087
DDDD{HHHHHHHH	chr12:57919471-57919718(+)$1	247	12	25	19.7017
####cccoooooo	chr19:56203140-56203428(+)$1	288	111	124	19.7894
:::::::::::::	chr17:42475016-42475275(-)$1	259	18	31	19.7894
::::::::cccll	chr17:45786044-45786361(+)$1	317	17	30	21.2807
::::ccc^^^^^^	chr6:32083489-32083743(-)$1	254	197	210	23.1228
:::::::::::::	chr12:7045556-7045813(+)$1	257	197	210	21.7192
KKEEEEE::::::	chr6:30672837-30673081(-)$1	244	100	113	20.9298
DD::::::::::d	chr2:69472424-69472716(+)$1	292	37	50	19.2631
:::::::::::::	chr16:67576640-67576893(+)$1	253	108	121	19.5263
dd4444dddd:::	chr11:65422121-65422394(-)$1	273	27	40	20.1403
:FFFFFF::::::	chr17:40947056-40947326(+)$1	270	239	252	23.4736
bbmmmmbb333dd	chr16:67233803-67234060(+)$1	257	180	193	16.8070
:::::ccc$$$$$	chr19:54969699-54969932(+)$1	233	89	102	22.7719
bb333ccc:::::	chr1:171526774-171527025(+)$1	251	219	232	20.8421
++++++++++++c	chr1:8420434-8420669(-)$1	235	54	67	18.2105
eee:FFFFFFKKF	chr6:33166922-33167164(-)$1	242	24	37	16.8947
]bb333bb:::::	chr12:122261010-122261313(+)$1	303	209	222	19.6140
c####ddddoooo	chr1:156347165-156347400(+)$1	235	129	142	17.7719
HHHH::::::::G	chr12:57111343-57111576(-)$1	233	50	63	20.4035
EEEE:::::gggg	chr1:205492330-205492635(+)$1	305	163	176	21.9824
___DDDD::cccp	chr1:33236848-33237120(+)$1	272	245	258	23.2982
neeeee:::::::	chr1:153923729-153924002(-)$1	273	134	147	19.1754
dd:::cccxxxxx	chr11:65422194-65422476(-)$1	282	109	122	20.1403

#DB
.............	chr12:49445649-49445915(-)$1	1	28	41	18.2982
(((...)).....	chr20:43560907-43561168(+)$1	1	36	49	19.5263
.............	chr2:242163381-242163646(+)$1	1	112	125	17.2456
....)))...)))	chr3:47452351-47452586(+)$1	1	59	72	16.9824
......)))))))	chr19:7706714-7707036(+)$1	1	35	48	21.4561
)))..(((((.((	chr8:145112499-145112786(-)$1	1	79	92	20.0526
))))).)))))))	chr22:38014269-38014562(+)$1	1	161	174	19.2631
............)	chr19:15353863-15354116(-)$1	1	96	109	24.1754
..((...((((((	chr17:80397593-80397885(+)$1	1	14	27	21.3684
((((.........	chr12:57111191-57111461(-)$1	1	4	17	18.5614
............(	chr11:46398630-46398912(+)$1	1	152	165	20.9298
(((.(........	chr12:57111071-57111323(-)$1	1	4	17	20.4035
......(((((((	chr14:55529779-55530048(+)$1	1	75	88	20.8421
....)))).....	chr19:48197564-48197970(+)$1	1	143	156	25.8421
)).........((	chr16:67576786-67577029(+)$1	1	174	187	22.3333
....)))).....	chr16:30665998-30666278(+)$1	1	102	115	18.7368
.............	chr12:7045694-7045969(+)$1	1	59	72	21.7192
((..........)	chr3:47452024-47452290(+)$1	1	119	132	19.3508
...)))....)))	chr6:43472836-43473085(+)$1	1	117	130	17.0701
)............	chr11:68029577-68029879(-)$1	1	270	283	23.8245
....)))......	chr19:15353984-15354350(-)$1	1	170	183	21.8070
..........((.	chr3:48461366-48461618(-)$1	1	6	19	18.7368
)............	chr5:31526447-31526741(-)$1	1	161	174	22.0701
(((((((...(((	chr1:8420264-8420551(-)$1	1	24	37	19.5263
((((..((.((((	chr19:46393912-46394231(-)$1	1	81	94	23.8245
..(((((......	chr6:30672814-30673037(-)$1	1	56	69	20.9298
(.....)))))))	chr17:8046775-8047171(-)$1	1	197	210	19.6140
..........)))	chr3:184090230-184090538(-)$1	1	58	71	16.4561
)...(((......	chr19:17531726-17532042(+)$1	1	177	190	21.5438
....)))...)))	chr17:7129138-7129570(-)$1	1	243	256	19.7017
((...........	chr16:30732488-30732743(+)$1	1	116	129	17.6842
...)).)))...)	chr19:36278916-36279194(+)$1	1	151	164	22.0701
.............	chr1:10166206-10166559(+)$1	1	287	300	17.9473
....)))))))..	chr19:36211831-36212159(+)$1	1	281	294	27.5087
((((.((((((((	chr12:57919471-57919718(+)$1	1	12	25	19.7017
....(((......	chr19:56203140-56203428(+)$1	1	111	124	19.7894
.............	chr17:42475016-42475275(-)$1	1	18	31	19.7894
........(((..	chr17:45786044-45786361(+)$1	1	17	30	21.2807
....(((......	chr6:32083489-32083743(-)$1	1	197	210	23.1228
.............	chr12:7045556-7045813(+)$1	1	197	210	21.7192
..(((((......	chr6:30672837-30673081(-)$1	1	100	113	20.9298
((..........(	chr2:69472424-69472716(+)$1	1	37	50	19.2631
.............	chr16:67576640-67576893(+)$1	1	108	121	19.5263
))....))))...	chr11:65422121-65422394(-)$1	1	27	40	20.1403
.))))))......	chr17:40947056-40947326(+)$1	1	239	252	23.4736
((....))...))	chr16:67233803-67234060(+)$1	1	180	193	16.8070
.....(((.....	chr19:54969699-54969932(+)$1	1	89	102	22.7719
))...))).....	chr1:171526774-171527025(+)$1	1	219	232	20.8421
............(	chr1:8420434-8420669(-)$1	1	54	67	18.2105
))).((((((..(	chr6:33166922-33167164(-)$1	1	24	37	16.8947
.))...)).....	chr12:122261010-122261313(+)$1	1	209	222	19.6140
(....((((....	chr1:156347165-156347400(+)$1	1	129	142	17.7719
((((........(	chr12:57111343-57111576(-)$1	1	50	63	20.4035
)))).....((((	chr1:205492330-205492635(+)$1	1	163	176	21.9824
...))))..(((.	chr1:33236848-33237120(+)$1	1	245	258	23.2982
.))))).......	chr1:153923729-153924002(-)$1	1	134	147	19.1754
))...(((.....	chr11:65422194-65422476(-)$1	1	109	122	20.1403

#PSSM
C : 0.75	g : 0.08	c : 0.07	U : 0.03	A : 0.03	G : 0.01	
C : 0.68	c : 0.15	G : 0.07	U : 0.05	A : 0.03	
C : 0.71	c : 0.17	U : 0.07	u : 0.01	A : 0.01	
C : 0.70	c : 0.19	A : 0.08	U : 0.01	
C : 0.71	c : 0.19	A : 0.08	
A : 0.70	a : 0.14	U : 0.05	G : 0.05	g : 0.03	C : 0.01	
G : 0.47	C : 0.21	g : 0.12	U : 0.07	A : 0.07	c : 0.05	
C : 0.70	c : 0.17	U : 0.12	
C : 0.71	c : 0.15	U : 0.05	A : 0.05	u : 0.01	
C : 0.77	c : 0.17	U : 0.05	
C : 0.75	c : 0.17	A : 0.03	G : 0.01	U : 0.01	
U : 0.43	C : 0.21	A : 0.12	u : 0.12	G : 0.05	a : 0.03	c : 0.01	
C : 0.59	G : 0.14	c : 0.10	A : 0.07	g : 0.05	U : 0.01	a : 0.01	

#score	1164.052631578948
#seq	57
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_CDS_m3_run1.nuc.txt

#NT
gggucggg	chr7:65338233-65338489(+)$1	256	54	62	16.5000
gggccggg	chr6:32157536-32157751(-)$1	215	97	105	20.4285
gggcuggg	chr9:140323189-140323444(+)$1	255	44	52	17.3928
GGGCCUGG	chr1:249151583-249151913(-)$1	330	309	317	16.3214
GUGCCGGG	chr19:3543815-3544100(-)$1	285	183	191	15.8749
GGGUCGGG	chr12:123997754-123998009(-)$1	255	168	176	16.5000
AGGCCGGG	chr4:7012095-7012499(+)$1	404	92	100	16.3214
gggccggg	chr17:47841229-47841481(-)$1	252	74	82	20.4285
gggccggg	chr19:6739609-6739897(+)$1	288	37	45	20.4285
GGGCUGGG	chr19:1011090-1011426(-)$1	336	175	183	17.3928
GGGCCCGG	chr11:2405715-2406020(+)$1	305	83	91	16.3214
GGGCGGGG	chr19:44284872-44285145(-)$1	273	134	142	16.7678
gggccggg	chr3:50273589-50273876(+)$1	287	144	152	20.4285
gggcuggg	chr22:50942761-50943032(-)$1	271	74	82	17.3928
gggccggg	chr9:131102849-131103156(+)$1	307	90	98	20.4285
gggccggg	chr9:101867304-101867627(+)$1	323	147	155	20.4285
gggcuggg	chr19:49675017-49675383(+)$1	366	88	96	17.3928
cggccggg	chr8:30670160-30670423(-)$1	263	242	250	16.0535
GGGCCGUG	chr17:46986064-46986341(-)$1	277	30	38	15.6071
GGGCCUGG	chr16:88949062-88949350(-)$1	288	93	101	16.3214
GGGCCGGG	chr6:29600363-29600664(-)$1	301	232	240	20.4285
GGGUCGGG	chr16:725953-726314(+)$1	361	336	344	16.5000
AGGCCGGG	chr9:139249991-139250279(+)$1	288	256	264	16.3214
GGGCCCGG	chr6:43596664-43596967(-)$1	303	118	126	16.3214
gcgccggg	chr9:136223016-136223272(-)$1	256	1	9	15.7857
GGGCAGGG	chr9:139904700-139904995(-)$1	295	12	20	16.7678
GGGCCGGG	chr16:28878124-28878400(+)$1	276	94	102	20.4285
GGGCUGGG	chr19:4037219-4037476(+)$1	257	88	96	17.3928
GGGCCGGC	chr22:50658452-50658769(-)$1	317	253	261	15.6964
GGGCCGGG	chr19:41119667-41119933(+)$1	266	123	131	20.4285
gggccgga	chr19:47778066-47778333(+)$1	267	0	8	15.6964
GGGCUGGG	chr16:67190447-67190764(-)$1	317	123	131	17.3928
GGGUCGGG	chr12:132414131-132414397(+)$1	266	92	100	16.5000
GGGCCGGG	chr18:51750681-51750967(-)$1	286	238	246	20.4285
gggccggg	chr3:185542641-185542940(-)$1	299	22	30	20.4285
GGGCCUGG	chr13:115000372-115000688(+)$1	316	7	15	16.3214
GGGGCGGG	chr22:50722989-50723254(-)$1	265	30	38	16.2321
GUgccggg	chr7:77166777-77166994(+)$1	217	28	36	15.8749
GGGCCGGG	chr1:153930820-153931104(-)$1	284	11	19	20.4285
GGGCAGGG	chr21:46927311-46927578(+)$1	267	31	39	16.7678
ggggcggg	chr3:196730159-196730438(+)$1	279	65	73	16.2321
GGGCCAGG	chr17:7232336-7232703(-)$1	367	269	277	16.1428
gggccggg	chr10:101379842-101380102(-)$1	260	120	128	20.4285
GGGCCGGG	chr2:54197719-54198016(-)$1	297	271	279	20.4285
gggccggg	chr15:90172461-90172737(+)$1	276	2	10	20.4285
GGGUCGGG	chr7:77166710-77166977(+)$1	267	38	46	16.5000
GGGCUGGG	chr2:242447771-242448065(-)$1	294	104	112	17.3928
AGGCCGGG	chr19:42398119-42398386(+)$1	267	39	47	16.3214
GGGCUGGG	chr19:3201329-3201629(+)$1	300	21	29	17.3928
GGGCCGGG	chr11:61196970-61197343(-)$1	373	108	116	20.4285
GGGCUGGG	chr12:56552172-56552478(+)$1	306	230	238	17.3928
gguccggg	chr19:1592459-1592719(-)$1	260	39	47	15.6071
aggccggg	chr16:67700244-67700513(-)$1	269	3	11	16.3214
GGGCCCGG	chr7:150777590-150777876(-)$1	286	89	97	16.3214
GGGCGGGG	chr1:36788408-36788687(+)$1	279	60	68	16.7678

#otherMatches

#Struct PSSM
H{EEEEE:	chr17:48784808-48785144(-)$1	336	33	41	16.0535
d::::CCC	chr7:65338233-65338489(+)$1	256	54	62	16.5000
mmccc]dd	chr6:32157536-32157751(-)$1	215	97	105	20.4285
ggggg[dd	chr9:140323189-140323444(+)$1	255	44	52	17.3928
d]ccc]cc	chr1:249151583-249151913(-)$1	330	309	317	16.3214
b[eeeeee	chr19:3543815-3544100(-)$1	285	183	191	15.8749
fffffbb[	chr12:123997754-123998009(-)$1	255	168	176	16.5000
DDDDBBGG	chr4:7012095-7012499(+)$1	404	92	100	16.3214
44dddd22	chr17:47841229-47841481(-)$1	252	74	82	20.4285
!eeeee""	chr19:6739609-6739897(+)$1	288	37	45	20.4285
eeeedddd	chr19:1011090-1011426(-)$1	336	175	183	17.3928
hhdddd[c	chr11:2405715-2406020(+)$1	305	83	91	16.3214
d]ffffff	chr19:44284872-44285145(-)$1	273	134	142	16.7678
mmbbccc]	chr3:50273589-50273876(+)$1	287	144	152	20.4285
dd[ccc!!	chr22:50942761-50943032(-)$1	271	74	82	17.3928
========	chr9:131102849-131103156(+)$1	307	90	98	20.4285
d!!cccbb	chr9:101867304-101867627(+)$1	323	147	155	20.4285
cc]cccii	chr19:49675017-49675383(+)$1	366	88	96	17.3928
D}FFFFFF	chr8:30670160-30670423(-)$1	263	242	250	16.0535
ggggeeee	chr17:46986064-46986341(-)$1	277	30	38	15.6071
33cccddd	chr16:88949062-88949350(-)$1	288	93	101	16.3214
"""bbqqq	chr6:29600363-29600664(-)$1	301	232	240	20.4285
EEEEEeee	chr16:725953-726314(+)$1	361	336	344	16.5000
ddd::eee	chr9:139249991-139250279(+)$1	288	256	264	16.3214
77hhhhhh	chr6:43596664-43596967(-)$1	303	118	126	16.3214
dddd!!cc	chr9:136223016-136223272(-)$1	256	1	9	15.7857
dddda[ae	chr9:139904700-139904995(-)$1	295	12	20	16.7678
occc]ccc	chr16:28878124-28878400(+)$1	276	94	102	20.4285
[ffffff"	chr19:4037219-4037476(+)$1	257	88	96	17.3928
hhhhhhll	chr22:50658452-50658769(-)$1	317	253	261	15.6964
ddddcccm	chr19:41119667-41119933(+)$1	266	123	131	20.4285
:EEEEEKK	chr19:47778066-47778333(+)$1	267	0	8	15.6964
h22a5555	chr16:67190447-67190764(-)$1	317	123	131	17.3928
[eeeee""	chr12:132414131-132414397(+)$1	266	92	100	16.5000
g[ddddll	chr18:51750681-51750967(-)$1	286	238	246	20.4285
[ccc####	chr3:185542641-185542940(-)$1	299	22	30	20.4285
{A{GGGGG	chr13:115000372-115000688(+)$1	316	7	15	16.3214
JJJJJJJc	chr22:50722989-50723254(-)$1	265	30	38	16.2321
ea]bb]cc	chr7:77166777-77166994(+)$1	217	28	36	15.8749
JJJJJJ::	chr1:153930820-153931104(-)$1	284	11	19	20.4285
FFFF:fff	chr21:46927311-46927578(+)$1	267	31	39	16.7678
ffffbb]f	chr3:196730159-196730438(+)$1	279	65	73	16.2321
d]ccc444	chr17:7232336-7232703(-)$1	367	269	277	16.1428
]a]eeeee	chr10:101379842-101380102(-)$1	260	120	128	20.4285
ZZZDDDD}	chr2:54197719-54198016(-)$1	297	271	279	20.4285
b[ccc[dd	chr15:90172461-90172737(+)$1	276	2	10	20.4285
eeeee:BB	chr7:77166710-77166977(+)$1	267	38	46	16.5000
"a[eeeee	chr2:242447771-242448065(-)$1	294	104	112	17.3928
FFFFBB{B	chr19:42398119-42398386(+)$1	267	39	47	16.3214
ccddddnn	chr19:3201329-3201629(+)$1	300	21	29	17.3928
[ccc[iii	chr11:61196970-61197343(-)$1	373	108	116	20.4285
rrrrrrrr	chr12:56552172-56552478(+)$1	306	230	238	17.3928
GGGGGA{E	chr19:1592459-1592719(-)$1	260	39	47	15.6071
:::eeeee	chr16:67700244-67700513(-)$1	269	3	11	16.3214
:JJJJJJJ	chr7:150777590-150777876(-)$1	286	89	97	16.3214
BBKKGGGG	chr1:36788408-36788687(+)$1	279	60	68	16.7678

#DB
(.(((((.	chr17:48784808-48785144(-)$1	1	33	41	16.0535
)....(((	chr7:65338233-65338489(+)$1	1	54	62	16.5000
..))).))	chr6:32157536-32157751(-)$1	1	97	105	20.4285
(((((.((	chr9:140323189-140323444(+)$1	1	44	52	17.3928
).))).))	chr1:249151583-249151913(-)$1	1	309	317	16.3214
(.((((((	chr19:3543815-3544100(-)$1	1	183	191	15.8749
(((((((.	chr12:123997754-123998009(-)$1	1	168	176	16.5000
((((((((	chr4:7012095-7012499(+)$1	1	92	100	16.3214
..))))..	chr17:47841229-47841481(-)$1	1	74	82	20.4285
.(((((..	chr19:6739609-6739897(+)$1	1	37	45	20.4285
((((((((	chr19:1011090-1011426(-)$1	1	175	183	17.3928
((((((.(	chr11:2405715-2406020(+)$1	1	83	91	16.3214
).))))))	chr19:44284872-44285145(-)$1	1	134	142	16.7678
..))))).	chr3:50273589-50273876(+)$1	1	144	152	20.4285
((.(((..	chr22:50942761-50943032(-)$1	1	74	82	17.3928
((((((((	chr9:131102849-131103156(+)$1	1	90	98	20.4285
(..(((((	chr9:101867304-101867627(+)$1	1	147	155	20.4285
)).)))((	chr19:49675017-49675383(+)$1	1	88	96	17.3928
).))))))	chr8:30670160-30670423(-)$1	1	242	250	16.0535
))))((((	chr17:46986064-46986341(-)$1	1	30	38	15.6071
..))))))	chr16:88949062-88949350(-)$1	1	93	101	16.3214
...((...	chr6:29600363-29600664(-)$1	1	232	240	20.4285
)))))(((	chr16:725953-726314(+)$1	1	336	344	16.5000
)))..(((	chr9:139249991-139250279(+)$1	1	256	264	16.3214
..))))))	chr6:43596664-43596967(-)$1	1	118	126	16.3214
((((..((	chr9:136223016-136223272(-)$1	1	1	9	15.7857
(((((.((	chr9:139904700-139904995(-)$1	1	12	20	16.7678
.))).)))	chr16:28878124-28878400(+)$1	1	94	102	20.4285
.((((((.	chr19:4037219-4037476(+)$1	1	88	96	17.3928
((((((..	chr22:50658452-50658769(-)$1	1	253	261	15.6964
(((((((.	chr19:41119667-41119933(+)$1	1	123	131	20.4285
.(((((..	chr19:47778066-47778333(+)$1	1	0	8	15.6964
)..)....	chr16:67190447-67190764(-)$1	1	123	131	17.3928
.(((((..	chr12:132414131-132414397(+)$1	1	92	100	16.5000
(.((((..	chr18:51750681-51750967(-)$1	1	238	246	20.4285
.(((....	chr3:185542641-185542940(-)$1	1	22	30	20.4285
.(.(((((	chr13:115000372-115000688(+)$1	1	7	15	16.3214
((((((((	chr22:50722989-50723254(-)$1	1	30	38	16.2321
)).)).))	chr7:77166777-77166994(+)$1	1	28	36	15.8749
((((((..	chr1:153930820-153931104(-)$1	1	11	19	20.4285
((((.(((	chr21:46927311-46927578(+)$1	1	31	39	16.7678
)))))).)	chr3:196730159-196730438(+)$1	1	65	73	16.2321
).)))...	chr17:7232336-7232703(-)$1	1	269	277	16.1428
.).)))))	chr10:101379842-101380102(-)$1	1	120	128	20.4285
...)))).	chr2:54197719-54198016(-)$1	1	271	279	20.4285
(.(((.((	chr15:90172461-90172737(+)$1	1	2	10	20.4285
))))).((	chr7:77166710-77166977(+)$1	1	38	46	16.5000
.(.(((((	chr2:242447771-242448065(-)$1	1	104	112	17.3928
((((((.(	chr19:42398119-42398386(+)$1	1	39	47	16.3214
))((((..	chr19:3201329-3201629(+)$1	1	21	29	17.3928
.(((.(((	chr11:61196970-61197343(-)$1	1	108	116	20.4285
........	chr12:56552172-56552478(+)$1	1	230	238	17.3928
((((((.(	chr19:1592459-1592719(-)$1	1	39	47	15.6071
...(((((	chr16:67700244-67700513(-)$1	1	3	11	16.3214
.(((((((	chr7:150777590-150777876(-)$1	1	89	97	16.3214
((..((((	chr1:36788408-36788687(+)$1	1	60	68	16.7678

#PSSM
G : 0.58	g : 0.30	A : 0.05	U : 0.01	c : 0.01	a : 0.01	
G : 0.60	g : 0.33	U : 0.03	c : 0.01	
G : 0.62	g : 0.35	u : 0.01	
C : 0.53	c : 0.33	U : 0.07	u : 0.01	G : 0.01	g : 0.01	
C : 0.44	c : 0.32	U : 0.10	u : 0.05	G : 0.03	A : 0.03	
G : 0.49	g : 0.37	U : 0.05	C : 0.05	A : 0.01	
G : 0.60	g : 0.37	U : 0.01	
G : 0.60	g : 0.35	C : 0.01	a : 0.01	

#score	987.0357142857142
#seq	56
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_transcript_m3_run1.nuc.txt

#NT
UGCC	chr8:101717053-101717289(-)$1	236	160	164	11.9999
ugcc	chr1:171526764-171527036(+)$1	272	24	28	11.9999
UGCC	chr8:22277522-22277772(+)$1	250	200	204	11.9999
ugcc	chr3:194060571-194060827(-)$1	256	146	150	11.9999
UGCC	chrX:71495297-71495546(-)$1	249	52	56	11.9999
UGCC	chrX:131520601-131520868(-)$1	267	91	95	11.9999
UGCC	chr16:87865535-87865776(-)$1	241	111	115	11.9999
ugcc	chr2:47131182-47131503(-)$1	321	57	61	11.9999
UGCC	chr19:41812477-41812741(+)$1	264	24	28	11.9999
UGCC	chr7:137563397-137563639(-)$1	242	114	118	11.9999
UGCC	chr2:21230929-21231143(-)$1	214	200	204	11.9999
UGCC	chr20:30754141-30754367(+)$1	226	66	70	11.9999
UGCC	chr14:95058701-95058961(+)$1	260	51	55	11.9999
UGCC	chr6:31603685-31603922(+)$1	237	152	156	11.9999
UGCC	chr10:81072458-81072716(+)$1	258	128	132	11.9999
UGCC	chr13:96445092-96445391(+)$1	299	106	110	11.9999
UGCC	chr2:21230882-21231129(-)$1	247	186	190	11.9999
UGCC	chr8:101717782-101718001(-)$1	219	50	54	11.9999
UGCC	chr16:4013974-4014269(-)$1	295	57	61	11.9999
UGCC	chr10:102123356-102123597(+)$1	241	27	31	11.9999
UGCC	chrM:6376-6586(+)$1	210	49	53	11.9999
UGCC	chr6:36935997-36936257(-)$1	260	76	80	11.9999
UGCC	chrX:152966075-152966382(-)$1	307	8	12	11.9999
UGCC	chr1:150938958-150939205(-)$1	247	23	27	11.9999
UGCC	chr11:126132857-126133120(-)$1	263	131	135	11.9999
UGCC	chr1:230416250-230416560(+)$1	310	15	19	11.9999
UGCC	chr13:30087698-30087932(-)$1	234	106	110	11.9999
UGCC	chr2:21227852-21228054(-)$1	202	11	15	11.9999
UGCC	chr21:27253294-27253560(-)$1	266	12	16	11.9999
UGCC	chr2:85547733-85547956(-)$1	223	63	67	11.9999
UGCC	chr2:65540397-65540670(-)$1	273	196	200	11.9999
UGCC	chr20:30754213-30754472(+)$1	259	69	73	11.9999
UGCC	chr9:136230293-136230525(-)$1	232	175	179	11.9999
UGCC	chr17:28792519-28792766(+)$1	247	27	31	11.9999
UGCC	chr2:27439750-27440010(+)$1	260	247	251	11.9999
UGCC	chr5:149781139-149781401(-)$1	262	111	115	11.9999
UGCC	chr11:18428930-18429228(+)$1	298	137	141	11.9999
UGCC	chr17:40277277-40277548(-)$1	271	58	62	11.9999
UGCC	chr7:6505621-6505875(-)$1	254	226	230	11.9999
UGCC	chr5:179227400-179227685(-)$1	285	238	242	11.9999
UGCC	chr11:126133424-126133709(-)$1	285	100	104	11.9999
UGCC	chr12:50157486-50157710(+)$1	224	94	98	11.9999
ugcc	chr3:50337501-50337840(-)$1	339	241	245	11.9999
UGCC	chr8:101716461-101716677(-)$1	216	106	110	11.9999
UGCC	chr2:128947296-128947546(+)$1	250	129	133	11.9999
UGCC	chr7:23454611-23454860(-)$1	249	17	21	11.9999
UGCC	chr1:8930410-8930636(-)$1	226	110	114	11.9999
UGCC	chr3:52028957-52029167(-)$1	210	201	205	11.9999
ugcc	chr17:74560482-74560729(+)$1	247	186	190	11.9999
UGCC	chr2:27264345-27264578(+)$1	233	113	117	11.9999
UGCC	chr14:65406184-65406480(-)$1	296	265	269	11.9999
UGCC	chr19:50001081-50001285(+)$1	204	27	31	11.9999
UGCC	chr6:30695591-30695850(-)$1	259	85	89	11.9999
UGCC	chr8:99054771-99055015(-)$1	244	178	182	11.9999
UGCC	chr13:28197121-28197410(+)$1	289	182	186	11.9999
UGCC	chr8:101721596-101721812(-)$1	216	191	195	11.9999
UGCC	chr7:103180676-103180921(-)$1	245	175	179	11.9999
UGCC	chr2:216225984-216226206(-)$1	222	140	144	11.9999
UGCC	chr2:70315521-70315776(+)$1	255	13	17	11.9999
UGCC	chr1:169101540-169101762(+)$1	222	11	15	11.9999
UGCC	chr6:43752283-43752543(+)$1	260	110	114	11.9999
UGCC	chr1:20808969-20809207(-)$1	238	11	15	11.9999
UGCC	chr22:33258349-33258621(+)$1	272	34	38	11.9999
ugcc	chr2:188329850-188330113(-)$1	263	155	159	11.9999
UGCC	chr20:48698584-48698839(-)$1	255	74	78	11.9999
UGCC	chr8:38961024-38961253(+)$1	229	149	153	11.9999
UGCC	chr7:139299019-139299273(-)$1	254	51	55	11.9999
UGCC	chr5:149781549-149781802(-)$1	253	27	31	11.9999
UGCC	chr13:100215040-100215308(+)$1	268	43	47	11.9999
UGCC	chr12:9248161-9248379(-)$1	218	55	59	11.9999
UGCC	chr17:28795312-28795626(+)$1	314	170	174	11.9999
UGCC	chr22:51171184-51171477(+)$1	293	85	89	11.9999
UGCC	chr16:68225279-68225535(+)$1	256	141	145	11.9999

#otherMatches

#Struct PSSM
HHHH	chr6:74230626-74230852(-)$1	226	114	118	11.9999
iiii	chr8:101717053-101717289(-)$1	236	160	164	11.9999
::::	chr1:171526764-171527036(+)$1	272	24	28	11.9999
cccc	chr8:22277522-22277772(+)$1	250	200	204	11.9999
wwww	chr3:194060571-194060827(-)$1	256	146	150	11.9999
EEEE	chrX:71495297-71495546(-)$1	249	52	56	11.9999
EEEE	chrX:131520601-131520868(-)$1	267	91	95	11.9999
ddd:	chr16:87865535-87865776(-)$1	241	111	115	11.9999
hhh"	chr2:47131182-47131503(-)$1	321	57	61	11.9999
"bb[	chr19:41812477-41812741(+)$1	264	24	28	11.9999
%%%%	chr7:137563397-137563639(-)$1	242	114	118	11.9999
]bb:	chr2:21230929-21231143(-)$1	214	200	204	11.9999
eeee	chr20:30754141-30754367(+)$1	226	66	70	11.9999
cc22	chr14:95058701-95058961(+)$1	260	51	55	11.9999
iiii	chr6:31603685-31603922(+)$1	237	152	156	11.9999
CCC:	chr10:81072458-81072716(+)$1	258	128	132	11.9999
LEEE	chr13:96445092-96445391(+)$1	299	106	110	11.9999
c333	chr2:21230882-21231129(-)$1	247	186	190	11.9999
EEEK	chr8:101717782-101718001(-)$1	219	50	54	11.9999
ff]a	chr16:4013974-4014269(-)$1	295	57	61	11.9999
llld	chr10:102123356-102123597(+)$1	241	27	31	11.9999
^^^^	chrM:6376-6586(+)$1	210	49	53	11.9999
lddd	chr6:36935997-36936257(-)$1	260	76	80	11.9999
GGGG	chrX:152966075-152966382(-)$1	307	8	12	11.9999
WWWW	chr1:150938958-150939205(-)$1	247	23	27	11.9999
ee!!	chr11:126132857-126133120(-)$1	263	131	135	11.9999
[ddd	chr1:230416250-230416560(+)$1	310	15	19	11.9999
]ccc	chr13:30087698-30087932(-)$1	234	106	110	11.9999
f[dd	chr2:21227852-21228054(-)$1	202	11	15	11.9999
GGGG	chr21:27253294-27253560(-)$1	266	12	16	11.9999
:bba	chr2:85547733-85547956(-)$1	223	63	67	11.9999
dd::	chr2:65540397-65540670(-)$1	273	196	200	11.9999
dd]b	chr20:30754213-30754472(+)$1	259	69	73	11.9999
cc::	chr9:136230293-136230525(-)$1	232	175	179	11.9999
occc	chr17:28792519-28792766(+)$1	247	27	31	11.9999
HHHH	chr2:27439750-27440010(+)$1	260	247	251	11.9999
:EEE	chr5:149781139-149781401(-)$1	262	111	115	11.9999
cccs	chr11:18428930-18429228(+)$1	298	137	141	11.9999
[eee	chr17:40277277-40277548(-)$1	271	58	62	11.9999
hhhr	chr7:6505621-6505875(-)$1	254	226	230	11.9999
vvvv	chr5:179227400-179227685(-)$1	285	238	242	11.9999
+ddd	chr11:126133424-126133709(-)$1	285	100	104	11.9999
d]bb	chr12:50157486-50157710(+)$1	224	94	98	11.9999
FFYY	chr3:50337501-50337840(-)$1	339	241	245	11.9999
!bb[	chr8:101716461-101716677(-)$1	216	106	110	11.9999
dddd	chr2:128947296-128947546(+)$1	250	129	133	11.9999
::cc	chr7:23454611-23454860(-)$1	249	17	21	11.9999
ffff	chr1:8930410-8930636(-)$1	226	110	114	11.9999
mccc	chr3:52028957-52029167(-)$1	210	201	205	11.9999
cc44	chr17:74560482-74560729(+)$1	247	186	190	11.9999
eeee	chr2:27264345-27264578(+)$1	233	113	117	11.9999
ccc6	chr14:65406184-65406480(-)$1	296	265	269	11.9999
DDKK	chr19:50001081-50001285(+)$1	204	27	31	11.9999
:BBJ	chr6:30695591-30695850(-)$1	259	85	89	11.9999
??EE	chr8:99054771-99055015(-)$1	244	178	182	11.9999
cc77	chr13:28197121-28197410(+)$1	289	182	186	11.9999
4444	chr8:101721596-101721812(-)$1	216	191	195	11.9999
hhh2	chr7:103180676-103180921(-)$1	245	175	179	11.9999
ccc:	chr2:216225984-216226206(-)$1	222	140	144	11.9999
{BBM	chr2:70315521-70315776(+)$1	255	13	17	11.9999
!ddd	chr1:169101540-169101762(+)$1	222	11	15	11.9999
CFFF	chr6:43752283-43752543(+)$1	260	110	114	11.9999
====	chr1:20808969-20809207(-)$1	238	11	15	11.9999
dddd	chr22:33258349-33258621(+)$1	272	34	38	11.9999
eeee	chr2:188329850-188330113(-)$1	263	155	159	11.9999
ffuu	chr20:48698584-48698839(-)$1	255	74	78	11.9999
++++	chr8:38961024-38961253(+)$1	229	149	153	11.9999
CCCU	chr7:139299019-139299273(-)$1	254	51	55	11.9999
eeee	chr5:149781549-149781802(-)$1	253	27	31	11.9999
::::	chr13:100215040-100215308(+)$1	268	43	47	11.9999
dd]f	chr12:9248161-9248379(-)$1	218	55	59	11.9999
ggvv	chr17:28795312-28795626(+)$1	314	170	174	11.9999
[ccc	chr22:51171184-51171477(+)$1	293	85	89	11.9999
^^^^	chr16:68225279-68225535(+)$1	256	141	145	11.9999

#DB
))))	chr6:74230626-74230852(-)$1	1	114	118	11.9999
))))	chr8:101717053-101717289(-)$1	1	160	164	11.9999
....	chr1:171526764-171527036(+)$1	1	24	28	11.9999
))))	chr8:22277522-22277772(+)$1	1	200	204	11.9999
....	chr3:194060571-194060827(-)$1	1	146	150	11.9999
((((	chrX:71495297-71495546(-)$1	1	52	56	11.9999
((((	chrX:131520601-131520868(-)$1	1	91	95	11.9999
))).	chr16:87865535-87865776(-)$1	1	111	115	11.9999
(((.	chr2:47131182-47131503(-)$1	1	57	61	11.9999
.((.	chr19:41812477-41812741(+)$1	1	24	28	11.9999
....	chr7:137563397-137563639(-)$1	1	114	118	11.9999
.)).	chr2:21230929-21231143(-)$1	1	200	204	11.9999
((((	chr20:30754141-30754367(+)$1	1	66	70	11.9999
))..	chr14:95058701-95058961(+)$1	1	51	55	11.9999
))))	chr6:31603685-31603922(+)$1	1	152	156	11.9999
(((.	chr10:81072458-81072716(+)$1	1	128	132	11.9999
.(((	chr13:96445092-96445391(+)$1	1	106	110	11.9999
)...	chr2:21230882-21231129(-)$1	1	186	190	11.9999
(((.	chr8:101717782-101718001(-)$1	1	50	54	11.9999
)).)	chr16:4013974-4014269(-)$1	1	57	61	11.9999
...)	chr10:102123356-102123597(+)$1	1	27	31	11.9999
....	chrM:6376-6586(+)$1	1	49	53	11.9999
.)))	chr6:36935997-36936257(-)$1	1	76	80	11.9999
((((	chrX:152966075-152966382(-)$1	1	8	12	11.9999
....	chr1:150938958-150939205(-)$1	1	23	27	11.9999
((..	chr11:126132857-126133120(-)$1	1	131	135	11.9999
.(((	chr1:230416250-230416560(+)$1	1	15	19	11.9999
.)))	chr13:30087698-30087932(-)$1	1	106	110	11.9999
(.((	chr2:21227852-21228054(-)$1	1	11	15	11.9999
((((	chr21:27253294-27253560(-)$1	1	12	16	11.9999
.(((	chr2:85547733-85547956(-)$1	1	63	67	11.9999
))..	chr2:65540397-65540670(-)$1	1	196	200	11.9999
)).)	chr20:30754213-30754472(+)$1	1	69	73	11.9999
))..	chr9:136230293-136230525(-)$1	1	175	179	11.9999
.)))	chr17:28792519-28792766(+)$1	1	27	31	11.9999
))))	chr2:27439750-27440010(+)$1	1	247	251	11.9999
.)))	chr5:149781139-149781401(-)$1	1	111	115	11.9999
(((.	chr11:18428930-18429228(+)$1	1	137	141	11.9999
.(((	chr17:40277277-40277548(-)$1	1	58	62	11.9999
(((.	chr7:6505621-6505875(-)$1	1	226	230	11.9999
....	chr5:179227400-179227685(-)$1	1	238	242	11.9999
.(((	chr11:126133424-126133709(-)$1	1	100	104	11.9999
).))	chr12:50157486-50157710(+)$1	1	94	98	11.9999
))..	chr3:50337501-50337840(-)$1	1	241	245	11.9999
.((.	chr8:101716461-101716677(-)$1	1	106	110	11.9999
))))	chr2:128947296-128947546(+)$1	1	129	133	11.9999
..((	chr7:23454611-23454860(-)$1	1	17	21	11.9999
((((	chr1:8930410-8930636(-)$1	1	110	114	11.9999
.)))	chr3:52028957-52029167(-)$1	1	201	205	11.9999
))..	chr17:74560482-74560729(+)$1	1	186	190	11.9999
))))	chr2:27264345-27264578(+)$1	1	113	117	11.9999
))).	chr14:65406184-65406480(-)$1	1	265	269	11.9999
((..	chr19:50001081-50001285(+)$1	1	27	31	11.9999
.(((	chr6:30695591-30695850(-)$1	1	85	89	11.9999
..))	chr8:99054771-99055015(-)$1	1	178	182	11.9999
))..	chr13:28197121-28197410(+)$1	1	182	186	11.9999
....	chr8:101721596-101721812(-)$1	1	191	195	11.9999
))).	chr7:103180676-103180921(-)$1	1	175	179	11.9999
))).	chr2:216225984-216226206(-)$1	1	140	144	11.9999
.((.	chr2:70315521-70315776(+)$1	1	13	17	11.9999
.(((	chr1:169101540-169101762(+)$1	1	11	15	11.9999
))))	chr6:43752283-43752543(+)$1	1	110	114	11.9999
((((	chr1:20808969-20809207(-)$1	1	11	15	11.9999
((((	chr22:33258349-33258621(+)$1	1	34	38	11.9999
))))	chr2:188329850-188330113(-)$1	1	155	159	11.9999
((..	chr20:48698584-48698839(-)$1	1	74	78	11.9999
....	chr8:38961024-38961253(+)$1	1	149	153	11.9999
(((.	chr7:139299019-139299273(-)$1	1	51	55	11.9999
))))	chr5:149781549-149781802(-)$1	1	27	31	11.9999
....	chr13:100215040-100215308(+)$1	1	43	47	11.9999
)).)	chr12:9248161-9248379(-)$1	1	55	59	11.9999
((..	chr17:28795312-28795626(+)$1	1	170	174	11.9999
.(((	chr22:51171184-51171477(+)$1	1	85	89	11.9999
....	chr16:68225279-68225535(+)$1	1	141	145	11.9999

#PSSM
U : 0.91	u : 0.08	
G : 0.91	g : 0.08	
C : 0.91	c : 0.08	
C : 0.91	c : 0.08	

#score	887.9999999999998
#seq	74
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_CDS_m2_run1.nuc.txt

#NT
GACCAAAGUCCUGGGAACAGCCCCCACCCCUCUCCCAGGCUGGGCACUGGGCCUUGGCUGGUCCUGACCCUGCCCCUGCCCCCACCCGCAGCCGGGACUGCCCCAUCUUCUACAUGCGCAAGAAGGUGCGGAAGGACCUGGAAGACCAGGAGCAGCUCCUGCGGCGCUUCGGACCCCCUGGACCUGAGGCCUGGUGACCUUGCAAGCAUCCCAUGGGGCGGGGGCGGGACCAGGGAGAAUUAAUAAAGUUCUGGACUUUUGCUAUAUGGUGCUUUGUGGUCUCUGGGGGACACUGUCUG	chr19:50920978-50921373(+)$1	395	29	328	389.5000

#otherMatches

#Struct PSSM
ccccccccooooooccc]ccc]ccc22ccc:::GGGGGGG{FFFFFFFFFFFF:::::::::::ffffff$$$$$cccssssssssssccc666666ffffff:::ddddpppppppdddd:::::::::FFFFFFeeeee[bb[a!!bb[bb[ddddammmma]dddd22bb22bb22a]bb]eeeee:gggggggdddd[cccxxxxxxxxxxxxxxxccc]dddd]ggggggg:FFFFFF}GGGGGGG:ffffff[ffffffqqqqqqqqffffffffffffEEEEE::ddddnnn	chr2:96949173-96949525(-)$1	352	27	326	389.5000
KKCCCKKCCCKKCCCKKCCCFFFFFF::::::::dddd[a[ddddnnnnndddd]a]ddddEEEEEKKJJJJJJJJJJJJJJ:::FFFFFFKKCCC{DDDDbbhhhhhhhhrrrrrrrrrhhhhhhhh]bb:::::eeeeemmmmeeeee:DDDDCCCFFFFFF:ggggggg!!bblllbb22ggggggg:ccc[bb[bbmmmmbb22bbccc:JJJJJJJJJJJJJJYYEEEEEffffffnnnnnffffffeeeee"""bbqqqqqqqqbb55555eeeee:FFFFFF:::::::::e	chr19:50920978-50921373(+)$1	395	29	328	389.5000

#DB
((((((((......))).))).)))..)))...(((((((.((((((((((((...........((((((.....(((..........)))......))))))...((((.......)))).........))))))(((((.((.(..((.((.(((((....).))))..))..))..).)).))))).(((((((((((.(((...............))).)))).))))))).)))))).))))))).((((((.((((((........)))))))))))))))))..((((...	chr2:96949173-96949525(-)$1	1	27	326	389.5000
..(((..(((..(((..(((((((((........((((.(.((((.....)))).).))))(((((..((((((((((((((...((((((..(((.((((((((((((((.........)))))))).)).....(((((....))))).))))))))))))).(((((((..((...))..))))))).(((.((.((....))..))))).))))))))))))))..)))))((((((.....))))))(((((...((........)).....))))).)))))).........(	chr19:50920978-50921373(+)$1	1	29	328	389.5000

#PSSM
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	

#score	779.0
#seq	2
#width	299
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_transcript_m2_run2.nuc.txt

#NT
CCCCUGCCUUAUUUAGAUGAGUGCUUAAUCUGGUGUGGCUUUUGUUUCUCUAGGAGAUGACGGAAAAUGGAAGUCAUCAGUUGAUAGUAAAAGCAAGAUUCAACUUUAAGCAGACUAAUGAGGAUGAACUGUCAGUUUGUAAGGGGGACAUCAUUUACGUCACACGAGUUGAAGAAGGAGGCUGGUGGGAAGGCACAUUAAAUGGGAGAACAGGCUGGUUCCCCAGUAAUUAUGUCCGUGAAAUUAAAUCCAGUGGUAAGUGAAGUUUUUAAAAGGCUUUUUGAUUGUGACUCUUGUACUUUCUUGGUAUUCUUACUGAAAAUUGUGUAGUU	chrX:135825641-135826000(-)$1	359	2	334	423.5000

#otherMatches

#Struct PSSM
ccc$$$$$ccc!!dddd[bb!!bbqqqqqqqqbb22bb]dddd22ccc4444ccc::EEEEEKKEEEEE:ccc[ccc!!dddd[cccnnnnnccc]dddd22ccc]ccc::dddd####ggggggg[ammmmaggggggg7777777ddddccc[bboooooobb]cccffffff[bb[eeeee[bboooooobb]eeeee22bb]ffffff:::ffffff[bb[cccmmmmccc]bb]ffffff:::::::::eeeeea[hhhhhhhh^^^^^^^^^^^^^^^^^^^^^^^^hhhhhhhh]a22eeeee::::EEEEEYYEEEEE::::::	chr2:29016634-29016966(+)$1	332	0	332	423.5000
EEEEE:GGGGGGG{BBNNNNNGGGGGGG:dddd[a[cccmmmmccc]a]dddd::fffffftttttttttttffffffffffffxxxxxxxxxxxxxxxffffffGGGGGGGYYBBGGGGGGGggggggglllggggggg:EEEEECCC{HHHHHHHH:bb[ccc[ddddrrrrrrrrrdddd]ccc]bb:bb[dddd####dddd[ddddoooooodddddddd666666ddddbb::::::::::::::::::HHHHHHHH}CCC::dddd[gggggggffffff[dddd&&&&&&&dddd!!ddddmmmmdddddddd7777777dddd	chrX:135825641-135826000(-)$1	359	2	334	423.5000

#DB
(((.....(((..((((.((..((........))..)).))))..)))....)))..(((((..(((((.(((.(((..((((.(((.....))).))))..))).)))..((((....(((((((.(....)))))))).......))))(((.((......)).)))((((((.((.(((((.((......)).)))))..)).))))))...((((((.((.(((....))).)).)))))).........((((((.((((((((........................)))))))).)..)))))....)))))..)))))......	chr2:29016634-29016966(+)$1	1	0	332	423.5000
(((((.(((((((.((.....(((((((.((((.(.(((....))).).))))..((((((...........))))))((((((...............)))))))))))))..)))))))))(((((((...))))))).)))))(((.((((((((.((.(((.((((.........)))).))).)).((.((((....((((.((((......))))))))......))))))..................)))))))).)))..((((.(((((((((((((.((((.......((((..((((....)))))))).......))))	chrX:135825641-135826000(-)$1	1	2	334	423.5000

#PSSM
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
G : 1.00	
U : 1.00	
C : 0.50	U : 0.50	

#score	847.0
#seq	2
#width	332
#escape	false
#onStep	14215
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_UTR_m2_run1.nuc.txt

#NT
GAA	chr9:117062293-117062502(+)$1	209	84	87	9.0000
GAA	chr1:39876136-39876385(+)$1	249	0	3	9.0000
GAA	chr16:30792789-30793045(-)$1	256	5	8	9.0000
GAA	chr18:9254484-9254726(+)$1	242	59	62	9.0000
GAA	chr2:62933075-62933285(+)$1	210	70	73	9.0000
GAA	chr3:142751525-142751786(+)$1	261	116	119	9.0000
GAA	chr19:40539589-40539809(-)$1	220	55	58	9.0000
gaa	chr10:38409726-38410036(+)$1	310	5	8	9.0000
GAA	chr7:99634804-99635044(+)$1	240	21	24	9.0000
GAA	chr3:121414612-121414843(-)$1	231	1	4	9.0000
GAA	chr1:203766493-203766724(+)$1	231	16	19	9.0000
GAA	chr16:25251642-25251924(-)$1	282	2	5	9.0000
GAA	chr6:56399907-56400136(-)$1	229	7	10	9.0000
GAA	chr22:22319553-22319789(-)$1	236	163	166	9.0000
GAA	chr3:9489368-9489643(+)$1	275	13	16	9.0000
GAA	chr1:203769046-203769342(+)$1	296	13	16	9.0000
GAA	chr17:42475787-42476034(-)$1	247	36	39	9.0000
GAA	chr16:68598657-68598918(+)$1	261	25	28	9.0000
GAA	chr3:184101008-184101301(+)$1	293	175	178	9.0000
GAA	chr2:109087822-109088108(+)$1	286	3	6	9.0000
GAA	chr12:104341425-104341662(+)$1	237	6	9	9.0000
GAA	chr11:77330549-77330777(-)$1	228	103	106	9.0000
GAA	chr15:40913492-40913773(+)$1	281	1	4	9.0000
GAA	chr15:34817814-34818054(-)$1	240	56	59	9.0000
GAA	chr15:34671677-34671940(-)$1	263	161	164	9.0000
GAA	chr3:42680264-42680506(+)$1	242	1	4	9.0000
GAA	chr2:130831466-130831721(-)$1	255	51	54	9.0000
GAA	chr2:190728449-190728711(+)$1	262	23	26	9.0000
GAA	chr9:95036608-95036823(-)$1	215	64	67	9.0000
GAA	chrX:9686735-9687010(+)$1	275	33	36	9.0000
GAA	chr3:42680591-42680828(+)$1	237	50	53	9.0000
GAA	chr2:48026771-48027046(+)$1	275	47	50	9.0000
GAA	chr12:112757019-112757328(-)$1	309	80	83	9.0000
GAA	chr3:184101218-184101522(+)$1	304	7	10	9.0000
GAA	chr1:237060962-237061218(+)$1	256	26	29	9.0000
GAA	chr2:95814753-95815101(-)$1	348	4	7	9.0000
GAA	chr17:2323335-2323606(-)$1	271	25	28	9.0000
GAA	chr19:53115633-53115881(-)$1	248	79	82	9.0000
GAA	chr18:6031580-6031820(-)$1	240	14	17	9.0000
GAA	chr7:99634422-99634635(+)$1	213	107	110	9.0000
GAA	chr18:32917422-32917688(-)$1	266	16	19	9.0000
gaa	chr2:138749394-138749694(+)$1	300	14	17	9.0000
gaa	chr5:140085196-140085534(+)$1	338	4	7	9.0000
GAA	chr6:111694951-111695203(-)$1	252	36	39	9.0000
gaa	chr12:9847694-9847964(+)$1	270	73	76	9.0000
GAA	chr14:23528247-23528477(-)$1	230	13	16	9.0000
GAA	chr14:38091274-38091596(+)$1	322	24	27	9.0000
GAA	chr6:111697273-111697515(-)$1	242	2	5	9.0000
GAA	chr2:109087173-109087428(+)$1	255	1	4	9.0000
GAA	chr7:151873384-151873696(-)$1	312	65	68	9.0000
GAA	chr6:64422270-64422521(+)$1	251	8	11	9.0000
GAA	chr21:38480593-38480844(+)$1	251	12	15	9.0000
GAA	chr1:203766230-203766488(+)$1	258	17	20	9.0000
GAA	chr14:75287760-75288041(+)$1	281	8	11	9.0000
GAA	chr7:99634870-99635097(+)$1	227	16	19	9.0000
GAA	chr2:47747667-47747935(+)$1	268	2	5	9.0000
GAA	chr10:64946021-64946240(-)$1	219	50	53	9.0000
GAA	chr10:38407911-38408164(+)$1	253	3	6	9.0000
GAA	chr21:40570900-40571175(-)$1	275	0	3	9.0000
GAA	chr1:155451381-155451637(-)$1	256	4	7	9.0000
GAA	chr5:180683707-180683972(-)$1	265	111	114	9.0000
GAA	chr15:34818868-34819158(-)$1	290	32	35	9.0000
GAA	chr16:89350300-89350663(-)$1	363	7	10	9.0000
GAA	chr7:132973595-132973879(+)$1	284	3	6	9.0000
GAA	chr8:124346017-124346239(-)$1	222	72	75	9.0000
GAA	chr19:53912836-53913157(+)$1	321	7	10	9.0000
GAA	chr17:66422009-66422269(+)$1	260	39	42	9.0000
GAA	chr1:89225867-89226116(+)$1	249	101	104	9.0000
GAA	chr6:56417930-56418167(-)$1	237	39	42	9.0000
GAA	chr12:112743919-112744138(-)$1	219	0	3	9.0000
GAA	chrX:30877660-30877895(-)$1	235	43	46	9.0000
GAA	chr19:21475865-21476119(-)$1	254	6	9	9.0000
GAA	chr17:65343160-65343467(-)$1	307	100	103	9.0000
GAA	chr17:27417774-27418039(-)$1	265	127	130	9.0000
GAA	chr8:494741-495023(-)$1	282	271	274	9.0000
GAA	chr7:99633756-99633991(+)$1	235	90	93	9.0000
GAA	chr11:93431232-93431510(+)$1	278	16	19	9.0000
GAA	chr1:46073091-46073344(+)$1	253	8	11	9.0000
GAA	chr1:19444287-19444504(-)$1	217	41	44	9.0000
GAA	chr20:34302134-34302348(-)$1	214	49	52	9.0000
GAA	chr4:762282-762512(-)$1	230	7	10	9.0000
GAA	chr4:762017-762275(-)$1	258	19	22	9.0000
GAA	chr16:22360481-22360773(-)$1	292	16	19	9.0000
GAA	chr17:4793768-4794006(+)$1	238	43	46	9.0000
gaa	chr4:1228559-1228843(-)$1	284	34	37	9.0000
GAA	chr3:42687576-42687805(+)$1	229	43	46	9.0000
gaa	chr6:86299108-86299387(-)$1	279	30	33	9.0000
GAA	chr5:70798329-70798601(+)$1	272	41	44	9.0000
GAA	chr7:99634435-99634670(+)$1	235	94	97	9.0000
GAA	chr19:53121991-53122300(-)$1	309	15	18	9.0000
GAA	chr8:9605472-9605788(+)$1	316	142	145	9.0000
GAA	chr16:24801103-24801354(+)$1	251	121	124	9.0000
GAA	chr8:48352825-48353106(+)$1	281	5	8	9.0000
GAA	chr6:87964390-87964597(+)$1	207	7	10	9.0000
GAA	chr7:99635031-99635267(+)$1	236	32	35	9.0000
GAA	chr6:56392194-56392444(-)$1	250	7	10	9.0000
GAA	chr15:56208913-56209159(-)$1	246	117	120	9.0000
GAA	chr16:24802450-24802723(+)$1	273	14	17	9.0000
GAA	chr10:105361222-105361488(-)$1	266	45	48	9.0000

#otherMatches

#Struct PSSM
fmm	chr6:111694051-111694310(-)$1	259	54	57	9.0000
FFF	chr9:117062293-117062502(+)$1	209	84	87	9.0000
:::	chr1:39876136-39876385(+)$1	249	0	3	9.0000
:::	chr16:30792789-30793045(-)$1	256	5	8	9.0000
DD:	chr18:9254484-9254726(+)$1	242	59	62	9.0000
FFF	chr2:62933075-62933285(+)$1	210	70	73	9.0000
:::	chr3:142751525-142751786(+)$1	261	116	119	9.0000
ggg	chr19:40539589-40539809(-)$1	220	55	58	9.0000
MMM	chr10:38409726-38410036(+)$1	310	5	8	9.0000
BB{	chr7:99634804-99635044(+)$1	240	21	24	9.0000
CC{	chr3:121414612-121414843(-)$1	231	1	4	9.0000
"""	chr1:203766493-203766724(+)$1	231	16	19	9.0000
:::	chr16:25251642-25251924(-)$1	282	2	5	9.0000
G::	chr6:56399907-56400136(-)$1	229	7	10	9.0000
eeb	chr22:22319553-22319789(-)$1	236	163	166	9.0000
OOO	chr3:9489368-9489643(+)$1	275	13	16	9.0000
KKF	chr1:203769046-203769342(+)$1	296	13	16	9.0000
c[d	chr17:42475787-42476034(-)$1	247	36	39	9.0000
III	chr16:68598657-68598918(+)$1	261	25	28	9.0000
###	chr3:184101008-184101301(+)$1	293	175	178	9.0000
:::	chr2:109087822-109088108(+)$1	286	3	6	9.0000
:::	chr12:104341425-104341662(+)$1	237	6	9	9.0000
]cc	chr11:77330549-77330777(-)$1	228	103	106	9.0000
:::	chr15:40913492-40913773(+)$1	281	1	4	9.0000
cc#	chr15:34817814-34818054(-)$1	240	56	59	9.0000
EEE	chr15:34671677-34671940(-)$1	263	161	164	9.0000
:::	chr3:42680264-42680506(+)$1	242	1	4	9.0000
fff	chr2:130831466-130831721(-)$1	255	51	54	9.0000
eee	chr2:190728449-190728711(+)$1	262	23	26	9.0000
hhh	chr9:95036608-95036823(-)$1	215	64	67	9.0000
###	chrX:9686735-9687010(+)$1	275	33	36	9.0000
cc!	chr3:42680591-42680828(+)$1	237	50	53	9.0000
F::	chr2:48026771-48027046(+)$1	275	47	50	9.0000
ccr	chr12:112757019-112757328(-)$1	309	80	83	9.0000
d!!	chr3:184101218-184101522(+)$1	304	7	10	9.0000
cqq	chr1:237060962-237061218(+)$1	256	26	29	9.0000
:::	chr2:95814753-95815101(-)$1	348	4	7	9.0000
nnn	chr17:2323335-2323606(-)$1	271	25	28	9.0000
hee	chr19:53115633-53115881(-)$1	248	79	82	9.0000
$$$	chr18:6031580-6031820(-)$1	240	14	17	9.0000
fff	chr7:99634422-99634635(+)$1	213	107	110	9.0000
www	chr18:32917422-32917688(-)$1	266	16	19	9.0000
ee!	chr2:138749394-138749694(+)$1	300	14	17	9.0000
cc#	chr5:140085196-140085534(+)$1	338	4	7	9.0000
ggg	chr6:111694951-111695203(-)$1	252	36	39	9.0000
444	chr12:9847694-9847964(+)$1	270	73	76	9.0000
$$$	chr14:23528247-23528477(-)$1	230	13	16	9.0000
sss	chr14:38091274-38091596(+)$1	322	24	27	9.0000
:::	chr6:111697273-111697515(-)$1	242	2	5	9.0000
:CC	chr2:109087173-109087428(+)$1	255	1	4	9.0000
:::	chr7:151873384-151873696(-)$1	312	65	68	9.0000
:::	chr6:64422270-64422521(+)$1	251	8	11	9.0000
:::	chr21:38480593-38480844(+)$1	251	12	15	9.0000
CC{	chr1:203766230-203766488(+)$1	258	17	20	9.0000
C::	chr14:75287760-75288041(+)$1	281	8	11	9.0000
cc:	chr7:99634870-99635097(+)$1	227	16	19	9.0000
HHH	chr2:47747667-47747935(+)$1	268	2	5	9.0000
cc]	chr10:64946021-64946240(-)$1	219	50	53	9.0000
DPP	chr10:38407911-38408164(+)$1	253	3	6	9.0000
:DD	chr21:40570900-40571175(-)$1	275	0	3	9.0000
CLL	chr1:155451381-155451637(-)$1	256	4	7	9.0000
EEf	chr5:180683707-180683972(-)$1	265	111	114	9.0000
mmm	chr15:34818868-34819158(-)$1	290	32	35	9.0000
:::	chr16:89350300-89350663(-)$1	363	7	10	9.0000
D:b	chr7:132973595-132973879(+)$1	284	3	6	9.0000
ddd	chr8:124346017-124346239(-)$1	222	72	75	9.0000
bb[	chr19:53912836-53913157(+)$1	321	7	10	9.0000
c]c	chr17:66422009-66422269(+)$1	260	39	42	9.0000
ggg	chr1:89225867-89226116(+)$1	249	101	104	9.0000
:::	chr6:56417930-56418167(-)$1	237	39	42	9.0000
:::	chr12:112743919-112744138(-)$1	219	0	3	9.0000
FFF	chrX:30877660-30877895(-)$1	235	43	46	9.0000
QQQ	chr19:21475865-21476119(-)$1	254	6	9	9.0000
:ff	chr17:65343160-65343467(-)$1	307	100	103	9.0000
ddb	chr17:27417774-27418039(-)$1	265	127	130	9.0000
mmm	chr8:494741-495023(-)$1	282	271	274	9.0000
EEE	chr7:99633756-99633991(+)$1	235	90	93	9.0000
===	chr11:93431232-93431510(+)$1	278	16	19	9.0000
:::	chr1:46073091-46073344(+)$1	253	8	11	9.0000
ff:	chr1:19444287-19444504(-)$1	217	41	44	9.0000
eee	chr20:34302134-34302348(-)$1	214	49	52	9.0000
===	chr4:762282-762512(-)$1	230	7	10	9.0000
:::	chr4:762017-762275(-)$1	258	19	22	9.0000
:::	chr16:22360481-22360773(-)$1	292	16	19	9.0000
]a:	chr17:4793768-4794006(+)$1	238	43	46	9.0000
>>>	chr4:1228559-1228843(-)$1	284	34	37	9.0000
ee"	chr3:42687576-42687805(+)$1	229	43	46	9.0000
:::	chr6:86299108-86299387(-)$1	279	30	33	9.0000
fff	chr5:70798329-70798601(+)$1	272	41	44	9.0000
fff	chr7:99634435-99634670(+)$1	235	94	97	9.0000
SSS	chr19:53121991-53122300(-)$1	309	15	18	9.0000
GGG	chr8:9605472-9605788(+)$1	316	142	145	9.0000
gmm	chr16:24801103-24801354(+)$1	251	121	124	9.0000
ddd	chr8:48352825-48353106(+)$1	281	5	8	9.0000
:::	chr6:87964390-87964597(+)$1	207	7	10	9.0000
ooo	chr7:99635031-99635267(+)$1	236	32	35	9.0000
dd[	chr6:56392194-56392444(-)$1	250	7	10	9.0000
qqq	chr15:56208913-56209159(-)$1	246	117	120	9.0000
:::	chr16:24802450-24802723(+)$1	273	14	17	9.0000
eee	chr10:105361222-105361488(-)$1	266	45	48	9.0000

#DB
(..	chr6:111694051-111694310(-)$1	1	54	57	9.0000
(((	chr9:117062293-117062502(+)$1	1	84	87	9.0000
...	chr1:39876136-39876385(+)$1	1	0	3	9.0000
...	chr16:30792789-30793045(-)$1	1	5	8	9.0000
((.	chr18:9254484-9254726(+)$1	1	59	62	9.0000
(((	chr2:62933075-62933285(+)$1	1	70	73	9.0000
...	chr3:142751525-142751786(+)$1	1	116	119	9.0000
(((	chr19:40539589-40539809(-)$1	1	55	58	9.0000
...	chr10:38409726-38410036(+)$1	1	5	8	9.0000
((.	chr7:99634804-99635044(+)$1	1	21	24	9.0000
((.	chr3:121414612-121414843(-)$1	1	1	4	9.0000
...	chr1:203766493-203766724(+)$1	1	16	19	9.0000
...	chr16:25251642-25251924(-)$1	1	2	5	9.0000
(..	chr6:56399907-56400136(-)$1	1	7	10	9.0000
)))	chr22:22319553-22319789(-)$1	1	163	166	9.0000
...	chr3:9489368-9489643(+)$1	1	13	16	9.0000
..(	chr1:203769046-203769342(+)$1	1	13	16	9.0000
(.(	chr17:42475787-42476034(-)$1	1	36	39	9.0000
(((	chr16:68598657-68598918(+)$1	1	25	28	9.0000
...	chr3:184101008-184101301(+)$1	1	175	178	9.0000
...	chr2:109087822-109088108(+)$1	1	3	6	9.0000
...	chr12:104341425-104341662(+)$1	1	6	9	9.0000
.))	chr11:77330549-77330777(-)$1	1	103	106	9.0000
...	chr15:40913492-40913773(+)$1	1	1	4	9.0000
((.	chr15:34817814-34818054(-)$1	1	56	59	9.0000
(((	chr15:34671677-34671940(-)$1	1	161	164	9.0000
...	chr3:42680264-42680506(+)$1	1	1	4	9.0000
)))	chr2:130831466-130831721(-)$1	1	51	54	9.0000
)))	chr2:190728449-190728711(+)$1	1	23	26	9.0000
)))	chr9:95036608-95036823(-)$1	1	64	67	9.0000
...	chrX:9686735-9687010(+)$1	1	33	36	9.0000
((.	chr3:42680591-42680828(+)$1	1	50	53	9.0000
(..	chr2:48026771-48027046(+)$1	1	47	50	9.0000
((.	chr12:112757019-112757328(-)$1	1	80	83	9.0000
(..	chr3:184101218-184101522(+)$1	1	7	10	9.0000
(..	chr1:237060962-237061218(+)$1	1	26	29	9.0000
...	chr2:95814753-95815101(-)$1	1	4	7	9.0000
...	chr17:2323335-2323606(-)$1	1	25	28	9.0000
)((	chr19:53115633-53115881(-)$1	1	79	82	9.0000
...	chr18:6031580-6031820(-)$1	1	14	17	9.0000
(((	chr7:99634422-99634635(+)$1	1	107	110	9.0000
...	chr18:32917422-32917688(-)$1	1	16	19	9.0000
((.	chr2:138749394-138749694(+)$1	1	14	17	9.0000
((.	chr5:140085196-140085534(+)$1	1	4	7	9.0000
(((	chr6:111694951-111695203(-)$1	1	36	39	9.0000
...	chr12:9847694-9847964(+)$1	1	73	76	9.0000
...	chr14:23528247-23528477(-)$1	1	13	16	9.0000
...	chr14:38091274-38091596(+)$1	1	24	27	9.0000
...	chr6:111697273-111697515(-)$1	1	2	5	9.0000
.((	chr2:109087173-109087428(+)$1	1	1	4	9.0000
...	chr7:151873384-151873696(-)$1	1	65	68	9.0000
...	chr6:64422270-64422521(+)$1	1	8	11	9.0000
...	chr21:38480593-38480844(+)$1	1	12	15	9.0000
((.	chr1:203766230-203766488(+)$1	1	17	20	9.0000
(..	chr14:75287760-75288041(+)$1	1	8	11	9.0000
)).	chr7:99634870-99635097(+)$1	1	16	19	9.0000
(((	chr2:47747667-47747935(+)$1	1	2	5	9.0000
)).	chr10:64946021-64946240(-)$1	1	50	53	9.0000
(..	chr10:38407911-38408164(+)$1	1	3	6	9.0000
.((	chr21:40570900-40571175(-)$1	1	0	3	9.0000
(..	chr1:155451381-155451637(-)$1	1	4	7	9.0000
(((	chr5:180683707-180683972(-)$1	1	111	114	9.0000
...	chr15:34818868-34819158(-)$1	1	32	35	9.0000
...	chr16:89350300-89350663(-)$1	1	7	10	9.0000
(.(	chr7:132973595-132973879(+)$1	1	3	6	9.0000
)))	chr8:124346017-124346239(-)$1	1	72	75	9.0000
((.	chr19:53912836-53913157(+)$1	1	7	10	9.0000
).)	chr17:66422009-66422269(+)$1	1	39	42	9.0000
(((	chr1:89225867-89226116(+)$1	1	101	104	9.0000
...	chr6:56417930-56418167(-)$1	1	39	42	9.0000
...	chr12:112743919-112744138(-)$1	1	0	3	9.0000
(((	chrX:30877660-30877895(-)$1	1	43	46	9.0000
...	chr19:21475865-21476119(-)$1	1	6	9	9.0000
.((	chr17:65343160-65343467(-)$1	1	100	103	9.0000
)))	chr17:27417774-27418039(-)$1	1	127	130	9.0000
...	chr8:494741-495023(-)$1	1	271	274	9.0000
)))	chr7:99633756-99633991(+)$1	1	90	93	9.0000
(((	chr11:93431232-93431510(+)$1	1	16	19	9.0000
...	chr1:46073091-46073344(+)$1	1	8	11	9.0000
)).	chr1:19444287-19444504(-)$1	1	41	44	9.0000
)))	chr20:34302134-34302348(-)$1	1	49	52	9.0000
(((	chr4:762282-762512(-)$1	1	7	10	9.0000
...	chr4:762017-762275(-)$1	1	19	22	9.0000
...	chr16:22360481-22360773(-)$1	1	16	19	9.0000
.).	chr17:4793768-4794006(+)$1	1	43	46	9.0000
...	chr4:1228559-1228843(-)$1	1	34	37	9.0000
((.	chr3:42687576-42687805(+)$1	1	43	46	9.0000
...	chr6:86299108-86299387(-)$1	1	30	33	9.0000
(((	chr5:70798329-70798601(+)$1	1	41	44	9.0000
(((	chr7:99634435-99634670(+)$1	1	94	97	9.0000
...	chr19:53121991-53122300(-)$1	1	15	18	9.0000
)))	chr8:9605472-9605788(+)$1	1	142	145	9.0000
(..	chr16:24801103-24801354(+)$1	1	121	124	9.0000
(((	chr8:48352825-48353106(+)$1	1	5	8	9.0000
...	chr6:87964390-87964597(+)$1	1	7	10	9.0000
...	chr7:99635031-99635267(+)$1	1	32	35	9.0000
((.	chr6:56392194-56392444(-)$1	1	7	10	9.0000
...	chr15:56208913-56209159(-)$1	1	117	120	9.0000
...	chr16:24802450-24802723(+)$1	1	14	17	9.0000
)))	chr10:105361222-105361488(-)$1	1	45	48	9.0000

#PSSM
G : 0.94	g : 0.06	
A : 0.94	a : 0.06	
A : 0.94	a : 0.06	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_CDS_m1_run2.nuc.txt

#NT
GGGGGAGCAGGG	chr9:117053054-117053295(+)$1	241	34	46	22.0714
GGAGGAGGGGGU	chr21:46281504-46281835(-)$1	331	197	209	17.0714
GGGGGUGCAGGG	chr14:34931151-34931420(-)$1	269	247	259	17.7857
GGUGGAGGAGGA	chr7:104752932-104753200(-)$1	268	102	114	17.4285
UGGGGAGCAAGG	chr9:117026537-117026778(+)$1	241	123	135	18.8571
AGGGGAGCCAGG	chr9:116999159-116999368(+)$1	209	99	111	17.7857
UGGGGAGACAGG	chr9:117052426-117052697(+)$1	271	111	123	16.7142
GGCGGAGGUGGU	chr2:220435293-220435530(-)$1	237	1	13	15.9999
GGGGGAGCAGGG	chr9:117053000-117053254(+)$1	254	88	100	22.0714
GGAGGAGGCCGU	chr8:144940431-144940704(-)$1	273	131	143	17.0714
GGGGGAGGAAGU	chrX:41193667-41193974(+)$1	307	142	154	20.6428
GGGGGAGACAGG	chr21:46908232-46908457(+)$1	225	192	204	19.9285
GGAGGAGCCCGG	chr14:39736575-39736846(+)$1	271	90	102	18.4999

#otherMatches

#Struct PSSM
====bb]a::::	chr1:9790526-9790789(-)$1	263	55	67	18.5000
===========]	chr9:117053054-117053295(+)$1	241	34	46	22.0714
ffDDDD}A}CCC	chr21:46281504-46281835(-)$1	331	197	209	17.0714
FFFZZZEEEEED	chr14:34931151-34931420(-)$1	269	247	259	17.7857
cccc]bb]bb22	chr7:104752932-104753200(-)$1	268	102	114	17.4285
IIIIIIII::ff	chr9:117026537-117026778(+)$1	241	123	135	18.8571
gggg]bb]a]ff	chr9:116999159-116999368(+)$1	209	99	111	17.7857
]dddd22ccc::	chr9:117052426-117052697(+)$1	271	111	123	16.7142
{CCCKKCCC{DD	chr2:220435293-220435530(-)$1	237	1	13	15.9999
===========]	chr9:117053000-117053254(+)$1	254	88	100	22.0714
]bb]ffffffhh	chr8:144940431-144940704(-)$1	273	131	143	17.0714
]a]eeeee22bb	chrX:41193667-41193974(+)$1	307	142	154	20.6428
JJJJJJJJJJII	chr21:46908232-46908457(+)$1	225	192	204	19.9285
ee!!ccc"""cc	chr14:39736575-39736846(+)$1	271	90	102	18.4999

#DB
)))))).)....	chr1:9790526-9790789(-)$1	1	55	67	18.5000
))))))))))).	chr9:117053054-117053295(+)$1	1	34	46	22.0714
)))))).).)))	chr21:46281504-46281835(-)$1	1	197	209	17.0714
)))...))))))	chr14:34931151-34931420(-)$1	1	247	259	17.7857
)))).)).))..	chr7:104752932-104753200(-)$1	1	102	114	17.4285
((((((((..((	chr9:117026537-117026778(+)$1	1	123	135	18.8571
)))).)).).))	chr9:116999159-116999368(+)$1	1	99	111	17.7857
.))))..)))..	chr9:117052426-117052697(+)$1	1	111	123	16.7142
.(((..(((.((	chr2:220435293-220435530(-)$1	1	1	13	15.9999
))))))))))).	chr9:117053000-117053254(+)$1	1	88	100	22.0714
.)).))))))))	chr8:144940431-144940704(-)$1	1	131	143	17.0714
.).)))))..))	chrX:41193667-41193974(+)$1	1	142	154	20.6428
))))))))))))	chr21:46908232-46908457(+)$1	1	192	204	19.9285
((..(((...((	chr14:39736575-39736846(+)$1	1	90	102	18.4999

#PSSM
G : 0.71	U : 0.14	g : 0.07	A : 0.07	
G : 0.92	g : 0.07	
G : 0.57	A : 0.21	a : 0.07	U : 0.07	C : 0.07	
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	
A : 0.85	a : 0.07	U : 0.07	
G : 0.92	g : 0.07	
C : 0.42	G : 0.35	A : 0.14	g : 0.07	
A : 0.42	C : 0.35	a : 0.07	G : 0.07	U : 0.07	
G : 0.42	A : 0.35	C : 0.14	a : 0.07	
G : 0.92	g : 0.07	
G : 0.57	U : 0.28	a : 0.07	A : 0.07	

#score	260.42857142857133
#seq	14
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_UTR_m2_run1.nuc.txt

#NT
cuauuuuu	chr4:95377903-95378211(+)$1	308	37	45	15.2499
UUAUUUUC	chrX:122735875-122736144(-)$1	269	112	120	17.4090
UUAUUUUG	chr1:21100199-21100477(-)$1	278	219	227	17.9772
UUAUUUUU	chr2:192547867-192548141(+)$1	274	265	273	19.7954
UUGUUUUU	chr11:124644978-124645260(-)$1	282	66	74	16.2727
UUAUCUUU	chr2:70438885-70439133(-)$1	248	24	32	15.4772
UUAUUUUU	chr18:9956495-9956799(+)$1	304	106	114	19.7954
UUAUCUUU	chr2:71635314-71635573(+)$1	259	70	78	15.4772
UUAUAUUU	chr2:120735230-120735526(+)$1	296	78	86	15.4772
CUAUUUUU	chr15:68587617-68587884(+)$1	267	72	80	15.2499
UUAUUUUG	chr15:42805324-42805628(+)$1	304	96	104	17.9772
UUAUUUUA	chr18:9956633-9956902(+)$1	269	1	9	18.0909
UUAUUUUA	chr14:58734041-58734338(-)$1	297	1	9	18.0909
UUGUUUUU	chr12:69663600-69663834(+)$1	234	9	17	16.2727
UUAUUUUA	chr3:197615045-197615367(+)$1	322	184	192	18.0909
UUAUUUUU	chr3:167726518-167726848(-)$1	330	80	88	19.7954
UUAUUUUA	chr7:26231219-26231453(-)$1	234	9	17	18.0909
UGAUUUUU	chr20:62588006-62588319(-)$1	313	250	258	15.4772
UUUUUUUU	chr18:77897966-77898219(+)$1	253	196	204	15.9318
UUGUUUUU	chr12:67704360-67704640(+)$1	280	200	208	16.2727
uuauuuuu	chr10:113915383-113915667(-)$1	284	248	256	19.7954
UUCuuuuu	chr2:190647534-190647793(-)$1	259	68	76	15.8181
UUAUUUUU	chr20:34319613-34319853(-)$1	240	81	89	19.7954
UUGUUUUU	chr20:44707946-44708202(-)$1	256	61	69	16.2727
UUAUUUUU	chr12:49666901-49667204(+)$1	303	151	159	19.7954
UUAUUUUG	chr13:41949760-41950127(+)$1	367	110	118	17.9772
UGAUUUUU	chrX:41378567-41378882(-)$1	315	62	70	15.4772
UUGUUUUA	chr21:40566975-40567254(-)$1	279	116	124	14.5681
UUAUUUUG	chr9:98776195-98776492(+)$1	297	58	66	17.9772
UUAUUUUC	chr17:25635492-25635709(+)$1	217	16	24	17.4090
UUAUUUUA	chr3:142137035-142137345(-)$1	310	20	28	18.0909
UUAUUUUC	chr3:132384479-132384748(+)$1	269	101	109	17.4090
UUAUUUUU	chr14:32626001-32626280(+)$1	279	1	9	19.7954
UUAUAUUU	chr15:35271345-35271568(-)$1	223	15	23	15.4772
UUAUUUUA	chr14:39819626-39819916(+)$1	290	25	33	18.0909
UUAUUUUG	chr1:63050163-63050459(-)$1	296	218	226	17.9772
UUAUUUUA	chr12:42842173-42842458(+)$1	285	264	272	18.0909
UUAUUUUA	chr12:22841847-22842103(+)$1	256	85	93	18.0909
UUUUUUUU	chr12:69667894-69668151(+)$1	257	0	8	15.9318
UUAUUUUG	chr6:167453897-167454192(+)$1	295	94	102	17.9772
UUAUUUUG	chr5:52390185-52390504(+)$1	319	25	33	17.9772
UUAUUUUG	chr16:24560402-24560806(+)$1	404	78	86	17.9772
UUAUUUUU	chr3:98512569-98512848(+)$1	279	74	82	19.7954

#otherMatches

#Struct PSSM
tttttt==	chr2:69548571-69548905(-)$1	334	141	149	15.4772
ll======	chr4:95377903-95378211(+)$1	308	37	45	15.2499
IIIII:cc	chrX:122735875-122736144(-)$1	269	112	120	17.4090
g4444ggg	chr1:21100199-21100477(-)$1	278	219	227	17.9772
HHHHHHH:	chr2:192547867-192548141(+)$1	274	265	273	19.7954
:ggggggg	chr11:124644978-124645260(-)$1	282	66	74	16.2727
mmffffff	chr2:70438885-70439133(-)$1	248	24	32	15.4772
:::::ggg	chr18:9956495-9956799(+)$1	304	106	114	19.7954
hhhhhhh:	chr2:71635314-71635573(+)$1	259	70	78	15.4772
hhhhhhhh	chr2:120735230-120735526(+)$1	296	78	86	15.4772
dd333hhh	chr15:68587617-68587884(+)$1	267	72	80	15.2499
"""iiiii	chr15:42805324-42805628(+)$1	304	96	104	17.9772
::::::::	chr18:9956633-9956902(+)$1	269	1	9	18.0909
FFFFF{FF	chr14:58734041-58734338(-)$1	297	1	9	18.0909
MDDDD{II	chr12:69663600-69663834(+)$1	234	9	17	16.2727
:FFFFFF}	chr3:197615045-197615367(+)$1	322	184	192	18.0909
eeeeemmm	chr3:167726518-167726848(-)$1	330	80	88	19.7954
bboooooo	chr7:26231219-26231453(-)$1	234	9	17	18.0909
eeee7777	chr20:62588006-62588319(-)$1	313	250	258	15.4772
^^^^^^^^	chr18:77897966-77898219(+)$1	253	196	204	15.9318
==="""bb	chr12:67704360-67704640(+)$1	280	200	208	16.2727
g%%%%%%c	chr10:113915383-113915667(-)$1	284	248	256	19.7954
III:::::	chr2:190647534-190647793(-)$1	259	68	76	15.8181
####iiii	chr20:34319613-34319853(-)$1	240	81	89	19.7954
qqqqqqee	chr20:44707946-44708202(-)$1	256	61	69	16.2727
]ddddhhh	chr12:49666901-49667204(+)$1	303	151	159	19.7954
pppppppb	chr13:41949760-41950127(+)$1	367	110	118	17.9772
dd####ee	chrX:41378567-41378882(-)$1	315	62	70	15.4772
WWWWGGGG	chr21:40566975-40567254(-)$1	279	116	124	14.5681
========	chr9:98776195-98776492(+)$1	297	58	66	17.9772
eeeeeeee	chr17:25635492-25635709(+)$1	217	16	24	17.4090
gggggmmm	chr3:142137035-142137345(-)$1	310	20	28	18.0909
eeeeeooo	chr3:132384479-132384748(+)$1	269	101	109	17.4090
::::::::	chr14:32626001-32626280(+)$1	279	1	9	19.7954
d[ccc[dd	chr15:35271345-35271568(-)$1	223	15	23	15.4772
{BB{DDDD	chr14:39819626-39819916(+)$1	290	25	33	18.0909
f'''''''	chr1:63050163-63050459(-)$1	296	218	226	17.9772
:::::eee	chr12:42842173-42842458(+)$1	285	264	272	18.0909
ccclllcc	chr12:22841847-22842103(+)$1	256	85	93	18.0909
::::::::	chr12:69667894-69668151(+)$1	257	0	8	15.9318
++++++++	chr6:167453897-167454192(+)$1	295	94	102	17.9772
$iiiiiii	chr5:52390185-52390504(+)$1	319	25	33	17.9772
::::::::	chr16:24560402-24560806(+)$1	404	78	86	17.9772
hhhhhhhh	chr3:98512569-98512848(+)$1	279	74	82	19.7954

#DB
......))	chr2:69548571-69548905(-)$1	1	141	149	15.4772
..))))))	chr4:95377903-95378211(+)$1	1	37	45	15.2499
(((((.((	chrX:122735875-122736144(-)$1	1	112	120	17.4090
)....)))	chr1:21100199-21100477(-)$1	1	219	227	17.9772
))))))).	chr2:192547867-192548141(+)$1	1	265	273	19.7954
.(((((((	chr11:124644978-124645260(-)$1	1	66	74	16.2727
..))))))	chr2:70438885-70439133(-)$1	1	24	32	15.4772
.....(((	chr18:9956495-9956799(+)$1	1	106	114	19.7954
))))))).	chr2:71635314-71635573(+)$1	1	70	78	15.4772
))))))))	chr2:120735230-120735526(+)$1	1	78	86	15.4772
))...)))	chr15:68587617-68587884(+)$1	1	72	80	15.2499
...(((((	chr15:42805324-42805628(+)$1	1	96	104	17.9772
........	chr18:9956633-9956902(+)$1	1	1	9	18.0909
(((((.((	chr14:58734041-58734338(-)$1	1	1	9	18.0909
.((((.((	chr12:69663600-69663834(+)$1	1	9	17	16.2727
.)))))).	chr3:197615045-197615367(+)$1	1	184	192	18.0909
(((((...	chr3:167726518-167726848(-)$1	1	80	88	19.7954
((......	chr7:26231219-26231453(-)$1	1	9	17	18.0909
))))....	chr20:62588006-62588319(-)$1	1	250	258	15.4772
........	chr18:77897966-77898219(+)$1	1	196	204	15.9318
(((...((	chr12:67704360-67704640(+)$1	1	200	208	16.2727
(......(	chr10:113915383-113915667(-)$1	1	248	256	19.7954
(((.....	chr2:190647534-190647793(-)$1	1	68	76	15.8181
....((((	chr20:34319613-34319853(-)$1	1	81	89	19.7954
......))	chr20:44707946-44708202(-)$1	1	61	69	16.2727
.)))))))	chr12:49666901-49667204(+)$1	1	151	159	19.7954
.......)	chr13:41949760-41950127(+)$1	1	110	118	17.9772
((....((	chrX:41378567-41378882(-)$1	1	62	70	15.4772
....((((	chr21:40566975-40567254(-)$1	1	116	124	14.5681
((((((((	chr9:98776195-98776492(+)$1	1	58	66	17.9772
))))))))	chr17:25635492-25635709(+)$1	1	16	24	17.4090
(((((...	chr3:142137035-142137345(-)$1	1	20	28	18.0909
(((((...	chr3:132384479-132384748(+)$1	1	101	109	17.4090
........	chr14:32626001-32626280(+)$1	1	1	9	19.7954
(.(((.((	chr15:35271345-35271568(-)$1	1	15	23	15.4772
.((.((((	chr14:39819626-39819916(+)$1	1	25	33	18.0909
(.......	chr1:63050163-63050459(-)$1	1	218	226	17.9772
.....(((	chr12:42842173-42842458(+)$1	1	264	272	18.0909
(((...))	chr12:22841847-22842103(+)$1	1	85	93	18.0909
........	chr12:69667894-69668151(+)$1	1	0	8	15.9318
........	chr6:167453897-167454192(+)$1	1	94	102	17.9772
.(((((((	chr5:52390185-52390504(+)$1	1	25	33	17.9772
........	chr16:24560402-24560806(+)$1	1	78	86	17.9772
))))))))	chr3:98512569-98512848(+)$1	1	74	82	19.7954

#PSSM
U : 0.93	c : 0.02	C : 0.02	u : 0.02	
U : 0.88	G : 0.06	u : 0.04	
A : 0.77	G : 0.11	a : 0.04	U : 0.04	C : 0.02	
U : 0.93	u : 0.06	
U : 0.84	u : 0.06	C : 0.04	A : 0.04	
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
U : 0.47	A : 0.20	G : 0.18	u : 0.06	C : 0.06	

#score	765.3181818181813
#seq	44
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_UTR_m2_run1.nuc.txt

#NT
CUGC	chr13:113977179-113977449(+)$1	270	82	86	11.9999
CUGC	chr3:52028008-52028239(-)$1	231	68	72	11.9999
CUGC	chr20:23614208-23614461(-)$1	253	21	25	11.9999
CUGC	chr5:179157262-179157515(+)$1	253	204	208	11.9999
CUGC	chr2:201342676-201342932(+)$1	256	5	9	11.9999
CUGC	chr2:65540397-65540670(-)$1	273	195	199	11.9999
CUGC	chr5:172377630-172378027(+)$1	397	67	71	11.9999
CUGC	chr19:7116315-7116583(-)$1	268	92	96	11.9999
CUGC	chr19:13054893-13055176(+)$1	283	188	192	11.9999
CUGC	chr22:36678379-36678647(-)$1	268	29	33	11.9999
CUGC	chr8:38961053-38961316(+)$1	263	128	132	11.9999
CUGC	chr17:53471506-53471757(-)$1	251	160	164	11.9999
cugc	chr11:73372815-73373081(+)$1	266	186	190	11.9999
CUGC	chr18:29126931-29127190(+)$1	259	201	205	11.9999
CUGC	chr6:52363491-52363747(-)$1	256	223	227	11.9999
cugc	chr7:37990794-37991107(+)$1	313	123	127	11.9999
cugc	chr4:1019480-1019806(+)$1	326	28	32	11.9999
CUGC	chr6:52364410-52364640(-)$1	230	107	111	11.9999
CUGC	chr13:30086345-30086588(-)$1	243	113	117	11.9999
CUGC	chr4:1018978-1019240(+)$1	262	169	173	11.9999
CUGC	chr2:85546886-85547135(-)$1	249	196	200	11.9999
CUGC	chr5:52782237-52782483(+)$1	246	158	162	11.9999
CUGC	chr10:81073494-81073754(+)$1	260	43	47	11.9999
CUGC	chr6:34213836-34214069(+)$1	233	5	9	11.9999
CUGC	chr1:55316542-55316789(-)$1	247	107	111	11.9999
CUGC	chr3:188602487-188602756(+)$1	269	129	133	11.9999
CUGC	chr20:30754141-30754367(+)$1	226	65	69	11.9999
CUGC	chr11:61734772-61735010(-)$1	238	37	41	11.9999
CUGC	chr6:7881939-7882210(-)$1	271	248	252	11.9999
CUGC	chr3:186793596-186793855(+)$1	259	88	92	11.9999
CUGC	chr20:48698421-48698686(-)$1	265	79	83	11.9999
CUGC	chr10:102120836-102121054(+)$1	218	18	22	11.9999
CUGC	chr19:3976276-3976537(-)$1	261	5	9	11.9999
CUGC	chr17:40126618-40126909(+)$1	291	35	39	11.9999
CUGC	chr6:119499209-119499449(-)$1	240	118	122	11.9999
CUGC	chr1:36806601-36806888(-)$1	287	147	151	11.9999
CUGC	chr2:216225935-216226166(-)$1	231	92	96	11.9999
CUGC	chr15:45009970-45010233(+)$1	263	186	190	11.9999
CUGC	chr13:30088258-30088522(-)$1	264	4	8	11.9999
CUGC	chr12:57107219-57107438(-)$1	219	80	84	11.9999
CUGC	chr17:76967469-76967711(-)$1	242	104	108	11.9999
CUGC	chr13:30087698-30087932(-)$1	234	16	20	11.9999
CUGC	chr12:69747573-69747829(+)$1	256	235	239	11.9999
CUGC	chr5:81574037-81574273(-)$1	236	87	91	11.9999
CUGC	chr14:65405946-65406194(-)$1	248	69	73	11.9999
CUGC	chr17:48212184-48212455(-)$1	271	20	24	11.9999
CUGC	chr2:85547386-85547632(-)$1	246	2	6	11.9999
CUGC	chr17:36891425-36891750(-)$1	325	36	40	11.9999
CUGC	chr11:86657189-86657476(-)$1	287	162	166	11.9999
CUGC	chr2:242168915-242169181(-)$1	266	12	16	11.9999
CUGC	chr7:94298173-94298414(+)$1	241	98	102	11.9999
CUGC	chr2:216226154-216226375(-)$1	221	134	138	11.9999
CUGC	chr5:32125832-32126190(-)$1	358	33	37	11.9999
CUGC	chr1:150938190-150938442(-)$1	252	80	84	11.9999
CUGC	chr20:4681034-4681308(+)$1	274	51	55	11.9999
CUGC	chr19:3976221-3976476(-)$1	255	56	60	11.9999
CUGC	chr17:28793216-28793502(+)$1	286	25	29	11.9999
CUGC	chr15:99501546-99501809(+)$1	263	70	74	11.9999
cugc	chr4:1019701-1019962(+)$1	261	15	19	11.9999
CUGC	chr19:13054846-13055093(+)$1	247	235	239	11.9999
CUGC	chr20:47731172-47731435(-)$1	263	79	83	11.9999
cugc	chr2:219140158-219140441(-)$1	283	28	32	11.9999
CUGC	chrX:20168972-20169232(-)$1	260	195	199	11.9999
CUGC	chr17:42397167-42397474(-)$1	307	14	18	11.9999
CUGC	chr21:46271036-46271264(-)$1	228	56	60	11.9999
CUGC	chr9:132901227-132901546(+)$1	319	56	60	11.9999
CUGC	chr12:57106482-57106743(-)$1	261	26	30	11.9999
CUGC	chr5:150407982-150408267(+)$1	285	2	6	11.9999
CUGC	chr20:31437438-31437732(+)$1	294	7	11	11.9999
CUGC	chr14:24707896-24708167(+)$1	271	168	172	11.9999
CUGC	chr20:307484-307768(+)$1	284	140	144	11.9999
cugc	chr14:75600650-75600937(-)$1	287	99	103	11.9999
CUGC	chr11:61732754-61732972(-)$1	218	87	91	11.9999
cugc	chr6:33268894-33269133(-)$1	239	6	10	11.9999
CUGc	chr13:113539580-113539830(+)$1	250	65	69	11.9999
CUGC	chr6:53133579-53133832(-)$1	253	121	125	11.9999
cugc	chr4:1019762-1020074(+)$1	312	1	5	11.9999
CUGC	chr16:450447-450711(+)$1	264	12	16	11.9999

#otherMatches

#Struct PSSM
DDKK	chr1:182353333-182353629(-)$1	296	2	6	11.9999
III:	chr13:113977179-113977449(+)$1	270	82	86	11.9999
bb]b	chr3:52028008-52028239(-)$1	231	68	72	11.9999
KKCC	chr20:23614208-23614461(-)$1	253	21	25	11.9999
JEEE	chr5:179157262-179157515(+)$1	253	204	208	11.9999
::::	chr2:201342676-201342932(+)$1	256	5	9	11.9999
ddd:	chr2:65540397-65540670(-)$1	273	195	199	11.9999
dddd	chr5:172377630-172378027(+)$1	397	67	71	11.9999
cmmm	chr19:7116315-7116583(-)$1	268	92	96	11.9999
====	chr19:13054893-13055176(+)$1	283	188	192	11.9999
afff	chr22:36678379-36678647(-)$1	268	29	33	11.9999
:ccc	chr8:38961053-38961316(+)$1	263	128	132	11.9999
((dd	chr17:53471506-53471757(-)$1	251	160	164	11.9999
===r	chr11:73372815-73373081(+)$1	266	186	190	11.9999
ee44	chr18:29126931-29127190(+)$1	259	201	205	11.9999
d[dd	chr6:52363491-52363747(-)$1	256	223	227	11.9999
D{DD	chr7:37990794-37991107(+)$1	313	123	127	11.9999
{BB{	chr4:1019480-1019806(+)$1	326	28	32	11.9999
C::c	chr6:52364410-52364640(-)$1	230	107	111	11.9999
~CCC	chr13:30086345-30086588(-)$1	243	113	117	11.9999
eeee	chr4:1018978-1019240(+)$1	262	169	173	11.9999
DDD}	chr2:85546886-85547135(-)$1	249	196	200	11.9999
::::	chr5:52782237-52782483(+)$1	246	158	162	11.9999
G{CC	chr10:81073494-81073754(+)$1	260	43	47	11.9999
BKKC	chr6:34213836-34214069(+)$1	233	5	9	11.9999
%%%%	chr1:55316542-55316789(-)$1	247	107	111	11.9999
dddd	chr3:188602487-188602756(+)$1	269	129	133	11.9999
eeee	chr20:30754141-30754367(+)$1	226	65	69	11.9999
22bb	chr11:61734772-61735010(-)$1	238	37	41	11.9999
iiii	chr6:7881939-7882210(-)$1	271	248	252	11.9999
::ff	chr3:186793596-186793855(+)$1	259	88	92	11.9999
e^^^	chr20:48698421-48698686(-)$1	265	79	83	11.9999
!!bb	chr10:102120836-102121054(+)$1	218	18	22	11.9999
FFFF	chr19:3976276-3976537(-)$1	261	5	9	11.9999
CCCD	chr17:40126618-40126909(+)$1	291	35	39	11.9999
22ff	chr6:119499209-119499449(-)$1	240	118	122	11.9999
[ccc	chr1:36806601-36806888(-)$1	287	147	151	11.9999
GGGG	chr2:216225935-216226166(-)$1	231	92	96	11.9999
^^^^	chr15:45009970-45010233(+)$1	263	186	190	11.9999
DDDK	chr13:30088258-30088522(-)$1	264	4	8	11.9999
FF:g	chr12:57107219-57107438(-)$1	219	80	84	11.9999
%%a[	chr17:76967469-76967711(-)$1	242	104	108	11.9999
ddd[	chr13:30087698-30087932(-)$1	234	16	20	11.9999
dddd	chr12:69747573-69747829(+)$1	256	235	239	11.9999
EEEE	chr5:81574037-81574273(-)$1	236	87	91	11.9999
"eee	chr14:65405946-65406194(-)$1	248	69	73	11.9999
eecc	chr17:48212184-48212455(-)$1	271	20	24	11.9999
:::F	chr2:85547386-85547632(-)$1	246	2	6	11.9999
::CC	chr17:36891425-36891750(-)$1	325	36	40	11.9999
cccc	chr11:86657189-86657476(-)$1	287	162	166	11.9999
:::A	chr2:242168915-242169181(-)$1	266	12	16	11.9999
eeee	chr7:94298173-94298414(+)$1	241	98	102	11.9999
eeee	chr2:216226154-216226375(-)$1	221	134	138	11.9999
F{EE	chr5:32125832-32126190(-)$1	358	33	37	11.9999
++++	chr1:150938190-150938442(-)$1	252	80	84	11.9999
pbb]	chr20:4681034-4681308(+)$1	274	51	55	11.9999
dddd	chr19:3976221-3976476(-)$1	255	56	60	11.9999
mmcc	chr17:28793216-28793502(+)$1	286	25	29	11.9999
eee4	chr15:99501546-99501809(+)$1	263	70	74	11.9999
dddd	chr4:1019701-1019962(+)$1	261	15	19	11.9999
::BB	chr19:13054846-13055093(+)$1	247	235	239	11.9999
ffff	chr20:47731172-47731435(-)$1	263	79	83	11.9999
HHHH	chr2:219140158-219140441(-)$1	283	28	32	11.9999
f[bb	chrX:20168972-20169232(-)$1	260	195	199	11.9999
eecc	chr17:42397167-42397474(-)$1	307	14	18	11.9999
eee5	chr21:46271036-46271264(-)$1	228	56	60	11.9999
ccmm	chr9:132901227-132901546(+)$1	319	56	60	11.9999
++ff	chr12:57106482-57106743(-)$1	261	26	30	11.9999
EEE{	chr5:150407982-150408267(+)$1	285	2	6	11.9999
EEEE	chr20:31437438-31437732(+)$1	294	7	11	11.9999
eee2	chr14:24707896-24708167(+)$1	271	168	172	11.9999
ffcc	chr20:307484-307768(+)$1	284	140	144	11.9999
cccq	chr14:75600650-75600937(-)$1	287	99	103	11.9999
&&&&	chr11:61732754-61732972(-)$1	218	87	91	11.9999
::cc	chr6:33268894-33269133(-)$1	239	6	10	11.9999
dddd	chr13:113539580-113539830(+)$1	250	65	69	11.9999
ffff	chr6:53133579-53133832(-)$1	253	121	125	11.9999
dddd	chr4:1019762-1020074(+)$1	312	1	5	11.9999
E:EE	chr16:450447-450711(+)$1	264	12	16	11.9999

#DB
((..	chr1:182353333-182353629(-)$1	1	2	6	11.9999
(((.	chr13:113977179-113977449(+)$1	1	82	86	11.9999
)).)	chr3:52028008-52028239(-)$1	1	68	72	11.9999
..((	chr20:23614208-23614461(-)$1	1	21	25	11.9999
))))	chr5:179157262-179157515(+)$1	1	204	208	11.9999
....	chr2:201342676-201342932(+)$1	1	5	9	11.9999
))).	chr2:65540397-65540670(-)$1	1	195	199	11.9999
((((	chr5:172377630-172378027(+)$1	1	67	71	11.9999
(...	chr19:7116315-7116583(-)$1	1	92	96	11.9999
((((	chr19:13054893-13055176(+)$1	1	188	192	11.9999
))))	chr22:36678379-36678647(-)$1	1	29	33	11.9999
.(((	chr8:38961053-38961316(+)$1	1	128	132	11.9999
..((	chr17:53471506-53471757(-)$1	1	160	164	11.9999
(((.	chr11:73372815-73373081(+)$1	1	186	190	11.9999
))..	chr18:29126931-29127190(+)$1	1	201	205	11.9999
(.((	chr6:52363491-52363747(-)$1	1	223	227	11.9999
(.((	chr7:37990794-37991107(+)$1	1	123	127	11.9999
.((.	chr4:1019480-1019806(+)$1	1	28	32	11.9999
(..(	chr6:52364410-52364640(-)$1	1	107	111	11.9999
.)))	chr13:30086345-30086588(-)$1	1	113	117	11.9999
((((	chr4:1018978-1019240(+)$1	1	169	173	11.9999
))).	chr2:85546886-85547135(-)$1	1	196	200	11.9999
....	chr5:52782237-52782483(+)$1	1	158	162	11.9999
(.((	chr10:81073494-81073754(+)$1	1	43	47	11.9999
(..(	chr6:34213836-34214069(+)$1	1	5	9	11.9999
....	chr1:55316542-55316789(-)$1	1	107	111	11.9999
))((	chr3:188602487-188602756(+)$1	1	129	133	11.9999
((((	chr20:30754141-30754367(+)$1	1	65	69	11.9999
..))	chr11:61734772-61735010(-)$1	1	37	41	11.9999
))))	chr6:7881939-7882210(-)$1	1	248	252	11.9999
..((	chr3:186793596-186793855(+)$1	1	88	92	11.9999
(...	chr20:48698421-48698686(-)$1	1	79	83	11.9999
..((	chr10:102120836-102121054(+)$1	1	18	22	11.9999
((((	chr19:3976276-3976537(-)$1	1	5	9	11.9999
((((	chr17:40126618-40126909(+)$1	1	35	39	11.9999
..))	chr6:119499209-119499449(-)$1	1	118	122	11.9999
.(((	chr1:36806601-36806888(-)$1	1	147	151	11.9999
((((	chr2:216225935-216226166(-)$1	1	92	96	11.9999
....	chr15:45009970-45010233(+)$1	1	186	190	11.9999
(((.	chr13:30088258-30088522(-)$1	1	4	8	11.9999
((.(	chr12:57107219-57107438(-)$1	1	80	84	11.9999
..(.	chr17:76967469-76967711(-)$1	1	104	108	11.9999
(((.	chr13:30087698-30087932(-)$1	1	16	20	11.9999
))))	chr12:69747573-69747829(+)$1	1	235	239	11.9999
((((	chr5:81574037-81574273(-)$1	1	87	91	11.9999
.(((	chr14:65405946-65406194(-)$1	1	69	73	11.9999
((((	chr17:48212184-48212455(-)$1	1	20	24	11.9999
...(	chr2:85547386-85547632(-)$1	1	2	6	11.9999
..((	chr17:36891425-36891750(-)$1	1	36	40	11.9999
))))	chr11:86657189-86657476(-)$1	1	162	166	11.9999
...(	chr2:242168915-242169181(-)$1	1	12	16	11.9999
((((	chr7:94298173-94298414(+)$1	1	98	102	11.9999
((((	chr2:216226154-216226375(-)$1	1	134	138	11.9999
(.((	chr5:32125832-32126190(-)$1	1	33	37	11.9999
....	chr1:150938190-150938442(-)$1	1	80	84	11.9999
.)).	chr20:4681034-4681308(+)$1	1	51	55	11.9999
((((	chr19:3976221-3976476(-)$1	1	56	60	11.9999
..))	chr17:28793216-28793502(+)$1	1	25	29	11.9999
))).	chr15:99501546-99501809(+)$1	1	70	74	11.9999
))))	chr4:1019701-1019962(+)$1	1	15	19	11.9999
..))	chr19:13054846-13055093(+)$1	1	235	239	11.9999
((((	chr20:47731172-47731435(-)$1	1	79	83	11.9999
((((	chr2:219140158-219140441(-)$1	1	28	32	11.9999
(.((	chrX:20168972-20169232(-)$1	1	195	199	11.9999
((((	chr17:42397167-42397474(-)$1	1	14	18	11.9999
))).	chr21:46271036-46271264(-)$1	1	56	60	11.9999
((..	chr9:132901227-132901546(+)$1	1	56	60	11.9999
..((	chr12:57106482-57106743(-)$1	1	26	30	11.9999
(((.	chr5:150407982-150408267(+)$1	1	2	6	11.9999
((((	chr20:31437438-31437732(+)$1	1	7	11	11.9999
))).	chr14:24707896-24708167(+)$1	1	168	172	11.9999
))))	chr20:307484-307768(+)$1	1	140	144	11.9999
(((.	chr14:75600650-75600937(-)$1	1	99	103	11.9999
....	chr11:61732754-61732972(-)$1	1	87	91	11.9999
..((	chr6:33268894-33269133(-)$1	1	6	10	11.9999
))))	chr13:113539580-113539830(+)$1	1	65	69	11.9999
))))	chr6:53133579-53133832(-)$1	1	121	125	11.9999
((((	chr4:1019762-1020074(+)$1	1	1	5	11.9999
(.((	chr16:450447-450711(+)$1	1	12	16	11.9999

#PSSM
C : 0.89	c : 0.10	
U : 0.89	u : 0.10	
G : 0.89	g : 0.10	
C : 0.88	c : 0.11	

#score	947.9999999999998
#seq	79
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_transcript_m1_run2.nuc.txt

#NT
UGUG	chr16:31199226-31199464(+)$1	238	127	131	12.0000
UGUG	chr2:236432202-236432449(+)$1	247	30	34	12.0000
UGUG	chr2:161297096-161297391(-)$1	295	76	80	12.0000
UGUG	chr17:70563346-70563660(-)$1	314	84	88	12.0000
UGUG	chr4:3527801-3528081(-)$1	280	102	106	12.0000
UGUG	chr2:173472384-173472693(+)$1	309	279	283	12.0000
ugug	chr11:68239037-68239325(+)$1	288	253	257	12.0000
UGUG	chr11:71718544-71718837(-)$1	293	88	92	12.0000
UGUG	chr2:219648454-219648716(+)$1	262	74	78	12.0000
UGUG	chr16:31199082-31199298(+)$1	216	50	54	12.0000
UGUG	chr1:151172807-151173059(+)$1	252	52	56	12.0000
ugug	chr20:43040863-43041134(+)$1	271	101	105	12.0000
ugug	chr11:67836459-67836797(-)$1	338	28	32	12.0000
UGUG	chr2:69609374-69609671(-)$1	297	65	69	12.0000
UGUG	chr17:27381218-27381573(+)$1	355	164	168	12.0000
UGUG	chr16:81524166-81524445(+)$1	279	144	148	12.0000
UGUG	chr2:242290489-242290757(+)$1	268	45	49	12.0000
UGUG	chr6:167344738-167345048(-)$1	310	6	10	12.0000
UGUG	chr2:65646342-65646629(-)$1	287	30	34	12.0000
ugug	chr11:43708885-43709155(+)$1	270	72	76	12.0000
UGUG	chr6:144648220-144648477(+)$1	257	18	22	12.0000
UGUG	chr1:17066926-17067137(+)$1	211	29	33	12.0000
ugug	chr1:44061444-44061708(+)$1	264	7	11	12.0000
UGUG	chr1:43398801-43399065(-)$1	264	83	87	12.0000
UGUG	chr1:43406492-43406749(-)$1	257	102	106	12.0000
UGUG	chr15:67391098-67391418(+)$1	320	147	151	12.0000
ugug	chrX:131545511-131545817(-)$1	306	223	227	12.0000
UGUG	chr2:236909383-236909668(+)$1	285	13	17	12.0000
UGUG	chr15:99194176-99194473(+)$1	297	36	40	12.0000
ugug	chr19:57346291-57346576(-)$1	285	46	50	12.0000
UGUG	chr21:45164296-45164557(+)$1	261	35	39	12.0000
UGUG	chr2:20550323-20550588(-)$1	265	17	21	12.0000
UGUG	chr19:34878757-34879035(+)$1	278	88	92	12.0000
ugug	chr2:177154863-177155140(+)$1	277	92	96	12.0000
UGUG	chr4:140588543-140588866(+)$1	323	50	54	12.0000
UGUG	chr20:44990447-44990717(-)$1	270	82	86	12.0000
UGUG	chr17:55608246-55608519(+)$1	273	142	146	12.0000
ugug	chrX:20274577-20274819(-)$1	242	59	63	12.0000
UGUG	chr3:148899525-148899778(-)$1	253	99	103	12.0000
ugug	chr20:5143159-5143532(+)$1	373	15	19	12.0000
ugug	chr3:171502268-171502554(-)$1	286	32	36	12.0000
ugug	chr17:75464942-75465213(+)$1	271	265	269	12.0000
UGUG	chr9:97806790-97807101(+)$1	311	299	303	12.0000
UGUG	chr17:75448156-75448413(+)$1	257	16	20	12.0000
ugug	chr19:35538915-35539175(+)$1	260	186	190	12.0000
UGUG	chr17:34881805-34882093(-)$1	288	44	48	12.0000
ugug	chr2:39319475-39319740(-)$1	265	92	96	12.0000
ugug	chr3:133471878-133472126(+)$1	248	155	159	12.0000
ugug	chr2:39341976-39342288(-)$1	312	253	257	12.0000
UGUG	chr21:47563054-47563327(-)$1	273	137	141	12.0000
UGUG	chr10:105612309-105612596(-)$1	287	210	214	12.0000
ugug	chr20:43053332-43053660(+)$1	328	19	23	12.0000
UGUG	chr14:39649897-39650168(+)$1	271	179	183	12.0000
ugug	chr16:89477764-89478075(-)$1	311	102	106	12.0000
UGUG	chr17:77966395-77966674(-)$1	279	99	103	12.0000
ugug	chr19:50358955-50359213(+)$1	258	96	100	12.0000
UGUG	chr10:35100074-35100359(-)$1	285	34	38	12.0000
ugug	chr12:9255991-9256215(-)$1	224	185	189	12.0000
ugug	chr6:24248380-24248708(-)$1	328	4	8	12.0000
UGUG	chr10:77397106-77397369(+)$1	263	209	213	12.0000
UGUG	chr2:54847951-54848196(+)$1	245	42	46	12.0000
ugug	chr21:38472321-38472596(+)$1	275	34	38	12.0000
UGUG	chr17:45027640-45027916(+)$1	276	7	11	12.0000
UGUG	chr8:13106852-13107092(-)$1	240	16	20	12.0000
UGUG	chr21:46292397-46292681(-)$1	284	120	124	12.0000
UGUG	chr7:130586072-130586370(-)$1	298	55	59	12.0000
UGUG	chr8:103407155-103407458(-)$1	303	83	87	12.0000
UGUG	chr19:56147574-56147853(+)$1	279	182	186	12.0000
UGUG	chr16:31199149-31199406(+)$1	257	204	208	12.0000
ugug	chr13:51012783-51013068(+)$1	285	45	49	12.0000
UGUG	chr20:34223476-34223802(-)$1	326	3	7	12.0000
ugug	chr6:129915659-129915949(-)$1	290	20	24	12.0000
ugug	chr21:46285979-46286259(-)$1	280	0	4	12.0000
UGUG	chr2:236460922-236461164(+)$1	242	109	113	12.0000
ugug	chr13:41624122-41624410(-)$1	288	174	178	12.0000
ugug	chr13:113394179-113394471(+)$1	292	39	43	12.0000
ugug	chr3:133470344-133470616(+)$1	272	100	104	12.0000
UGUG	chr7:47373512-47373835(-)$1	323	17	21	12.0000
ugug	chr19:35552995-35553278(+)$1	283	212	216	12.0000
UGUG	chr22:29405372-29405628(+)$1	256	120	124	12.0000
UGUG	chr17:70538609-70538885(-)$1	276	31	35	12.0000
UGUG	chr1:43400318-43400604(-)$1	286	116	120	12.0000
ugug	chr2:177137689-177137958(+)$1	269	89	93	12.0000
UGUG	chr14:21692515-21692779(-)$1	264	60	64	12.0000
UGUG	chr16:31199206-31199419(+)$1	213	147	151	12.0000
ugug	chr3:133468676-133468916(+)$1	240	4	8	12.0000
UGUG	chr8:144678831-144679086(-)$1	255	66	70	12.0000
UGUG	chr2:75777267-75777550(-)$1	283	274	278	12.0000
ugug	chr2:188388268-188388584(-)$1	316	41	45	12.0000
UGug	chr19:878833-879103(-)$1	270	81	85	12.0000
UGUG	chr1:169089286-169089546(+)$1	260	24	28	12.0000

#otherMatches

#Struct PSSM
IIII	chr6:2272913-2273184(+)$1	271	11	15	12.0000
"a[d	chr16:31199226-31199464(+)$1	238	127	131	12.0000
ee]a	chr2:236432202-236432449(+)$1	247	30	34	12.0000
d333	chr2:161297096-161297391(-)$1	295	76	80	12.0000
rrrr	chr17:70563346-70563660(-)$1	314	84	88	12.0000
ffff	chr4:3527801-3528081(-)$1	280	102	106	12.0000
eee:	chr2:173472384-173472693(+)$1	309	279	283	12.0000
bppp	chr11:68239037-68239325(+)$1	288	253	257	12.0000
emmm	chr11:71718544-71718837(-)$1	293	88	92	12.0000
{DDD	chr2:219648454-219648716(+)$1	262	74	78	12.0000
eee:	chr16:31199082-31199298(+)$1	216	50	54	12.0000
!ddd	chr1:151172807-151173059(+)$1	252	52	56	12.0000
dddn	chr20:43040863-43041134(+)$1	271	101	105	12.0000
nnee	chr11:67836459-67836797(-)$1	338	28	32	12.0000
hhhh	chr2:69609374-69609671(-)$1	297	65	69	12.0000
mmme	chr17:27381218-27381573(+)$1	355	164	168	12.0000
B}DD	chr16:81524166-81524445(+)$1	279	144	148	12.0000
FFFf	chr2:242290489-242290757(+)$1	268	45	49	12.0000
GGgg	chr6:167344738-167345048(-)$1	310	6	10	12.0000
ffff	chr2:65646342-65646629(-)$1	287	30	34	12.0000
eee:	chr11:43708885-43709155(+)$1	270	72	76	12.0000
EKKC	chr6:144648220-144648477(+)$1	257	18	22	12.0000
{A{F	chr1:17066926-17067137(+)$1	211	29	33	12.0000
C{AN	chr1:44061444-44061708(+)$1	264	7	11	12.0000
bb::	chr1:43398801-43399065(-)$1	264	83	87	12.0000
b[cc	chr1:43406492-43406749(-)$1	257	102	106	12.0000
gggg	chr15:67391098-67391418(+)$1	320	147	151	12.0000
c]dd	chrX:131545511-131545817(-)$1	306	223	227	12.0000
eeem	chr2:236909383-236909668(+)$1	285	13	17	12.0000
eeee	chr15:99194176-99194473(+)$1	297	36	40	12.0000
dddd	chr19:57346291-57346576(-)$1	285	46	50	12.0000
a[gg	chr21:45164296-45164557(+)$1	261	35	39	12.0000
eee]	chr2:20550323-20550588(-)$1	265	17	21	12.0000
!bb"	chr19:34878757-34879035(+)$1	278	88	92	12.0000
JJJJ	chr2:177154863-177155140(+)$1	277	92	96	12.0000
nbbh	chr4:140588543-140588866(+)$1	323	50	54	12.0000
cnnn	chr20:44990447-44990717(-)$1	270	82	86	12.0000
ddd7	chr17:55608246-55608519(+)$1	273	142	146	12.0000
ssss	chrX:20274577-20274819(-)$1	242	59	63	12.0000
eeee	chr3:148899525-148899778(-)$1	253	99	103	12.0000
FFFM	chr20:5143159-5143532(+)$1	373	15	19	12.0000
IIIK	chr3:171502268-171502554(-)$1	286	32	36	12.0000
EEE:	chr17:75464942-75465213(+)$1	271	265	269	12.0000
}FFF	chr9:97806790-97807101(+)$1	311	299	303	12.0000
ffff	chr17:75448156-75448413(+)$1	257	16	20	12.0000
:hhh	chr19:35538915-35539175(+)$1	260	186	190	12.0000
cnnn	chr17:34881805-34882093(-)$1	288	44	48	12.0000
ddd0	chr2:39319475-39319740(-)$1	265	92	96	12.0000
b[bb	chr3:133471878-133472126(+)$1	248	155	159	12.0000
B}FF	chr2:39341976-39342288(-)$1	312	253	257	12.0000
cggg	chr21:47563054-47563327(-)$1	273	137	141	12.0000
FFF/	chr10:105612309-105612596(-)$1	287	210	214	12.0000
ggg!	chr20:43053332-43053660(+)$1	328	19	23	12.0000
BYYD	chr14:39649897-39650168(+)$1	271	179	183	12.0000
RRRR	chr16:89477764-89478075(-)$1	311	102	106	12.0000
:ddd	chr17:77966395-77966674(-)$1	279	99	103	12.0000
::::	chr19:50358955-50359213(+)$1	258	96	100	12.0000
##cc	chr10:35100074-35100359(-)$1	285	34	38	12.0000
eee3	chr12:9255991-9256215(-)$1	224	185	189	12.0000
ddnn	chr6:24248380-24248708(-)$1	328	4	8	12.0000
CCCF	chr10:77397106-77397369(+)$1	263	209	213	12.0000
CGGG	chr2:54847951-54848196(+)$1	245	42	46	12.0000
KAKK	chr21:38472321-38472596(+)$1	275	34	38	12.0000
gmmm	chr17:45027640-45027916(+)$1	276	7	11	12.0000
IIII	chr8:13106852-13107092(-)$1	240	16	20	12.0000
iiii	chr21:46292397-46292681(-)$1	284	120	124	12.0000
d[a[	chr7:130586072-130586370(-)$1	298	55	59	12.0000
c]a]	chr8:103407155-103407458(-)$1	303	83	87	12.0000
[bbp	chr19:56147574-56147853(+)$1	279	182	186	12.0000
////	chr16:31199149-31199406(+)$1	257	204	208	12.0000
a[a[	chr13:51012783-51013068(+)$1	285	45	49	12.0000
::::	chr20:34223476-34223802(-)$1	326	3	7	12.0000
nnee	chr6:129915659-129915949(-)$1	290	20	24	12.0000
:::D	chr21:46285979-46286259(-)$1	280	0	4	12.0000
gg33	chr2:236460922-236461164(+)$1	242	109	113	12.0000
lccc	chr13:41624122-41624410(-)$1	288	174	178	12.0000
f%%%	chr13:113394179-113394471(+)$1	292	39	43	12.0000
dddb	chr3:133470344-133470616(+)$1	272	100	104	12.0000
FFFF	chr7:47373512-47373835(-)$1	323	17	21	12.0000
hhhh	chr19:35552995-35553278(+)$1	283	212	216	12.0000
gg[b	chr22:29405372-29405628(+)$1	256	120	124	12.0000
:EEE	chr17:70538609-70538885(-)$1	276	31	35	12.0000
ccc[	chr1:43400318-43400604(-)$1	286	116	120	12.0000
oooc	chr2:177137689-177137958(+)$1	269	89	93	12.0000
BB{D	chr14:21692515-21692779(-)$1	264	60	64	12.0000
////	chr16:31199206-31199419(+)$1	213	147	151	12.0000
A{CC	chr3:133468676-133468916(+)$1	240	4	8	12.0000
eeee	chr8:144678831-144679086(-)$1	255	66	70	12.0000
F:::	chr2:75777267-75777550(-)$1	283	274	278	12.0000
HHHH	chr2:188388268-188388584(-)$1	316	41	45	12.0000
sssa	chr19:878833-879103(-)$1	270	81	85	12.0000
eee#	chr1:169089286-169089546(+)$1	260	24	28	12.0000

#DB
((((	chr6:2272913-2273184(+)$1	1	11	15	12.0000
.(.(	chr16:31199226-31199464(+)$1	1	127	131	12.0000
)).)	chr2:236432202-236432449(+)$1	1	30	34	12.0000
)...	chr2:161297096-161297391(-)$1	1	76	80	12.0000
....	chr17:70563346-70563660(-)$1	1	84	88	12.0000
))))	chr4:3527801-3528081(-)$1	1	102	106	12.0000
))).	chr2:173472384-173472693(+)$1	1	279	283	12.0000
(...	chr11:68239037-68239325(+)$1	1	253	257	12.0000
(...	chr11:71718544-71718837(-)$1	1	88	92	12.0000
.(((	chr2:219648454-219648716(+)$1	1	74	78	12.0000
))).	chr16:31199082-31199298(+)$1	1	50	54	12.0000
.(((	chr1:151172807-151173059(+)$1	1	52	56	12.0000
(((.	chr20:43040863-43041134(+)$1	1	101	105	12.0000
..))	chr11:67836459-67836797(-)$1	1	28	32	12.0000
((((	chr2:69609374-69609671(-)$1	1	65	69	12.0000
...)	chr17:27381218-27381573(+)$1	1	164	168	12.0000
).))	chr16:81524166-81524445(+)$1	1	144	148	12.0000
((((	chr2:242290489-242290757(+)$1	1	45	49	12.0000
((((	chr6:167344738-167345048(-)$1	1	6	10	12.0000
))))	chr2:65646342-65646629(-)$1	1	30	34	12.0000
))).	chr11:43708885-43709155(+)$1	1	72	76	12.0000
(..(	chr6:144648220-144648477(+)$1	1	18	22	12.0000
.(.(	chr1:17066926-17067137(+)$1	1	29	33	12.0000
(.(.	chr1:44061444-44061708(+)$1	1	7	11	12.0000
))..	chr1:43398801-43399065(-)$1	1	83	87	12.0000
(.((	chr1:43406492-43406749(-)$1	1	102	106	12.0000
((((	chr15:67391098-67391418(+)$1	1	147	151	12.0000
).))	chrX:131545511-131545817(-)$1	1	223	227	12.0000
(((.	chr2:236909383-236909668(+)$1	1	13	17	12.0000
((((	chr15:99194176-99194473(+)$1	1	36	40	12.0000
))))	chr19:57346291-57346576(-)$1	1	46	50	12.0000
(.((	chr21:45164296-45164557(+)$1	1	35	39	12.0000
))).	chr2:20550323-20550588(-)$1	1	17	21	12.0000
.((.	chr19:34878757-34879035(+)$1	1	88	92	12.0000
((((	chr2:177154863-177155140(+)$1	1	92	96	12.0000
.)))	chr4:140588543-140588866(+)$1	1	50	54	12.0000
(...	chr20:44990447-44990717(-)$1	1	82	86	12.0000
))).	chr17:55608246-55608519(+)$1	1	142	146	12.0000
....	chrX:20274577-20274819(-)$1	1	59	63	12.0000
))))	chr3:148899525-148899778(-)$1	1	99	103	12.0000
(((.	chr20:5143159-5143532(+)$1	1	15	19	12.0000
(((.	chr3:171502268-171502554(-)$1	1	32	36	12.0000
))).	chr17:75464942-75465213(+)$1	1	265	269	12.0000
.)))	chr9:97806790-97807101(+)$1	1	299	303	12.0000
((((	chr17:75448156-75448413(+)$1	1	16	20	12.0000
.(((	chr19:35538915-35539175(+)$1	1	186	190	12.0000
(...	chr17:34881805-34882093(-)$1	1	44	48	12.0000
))).	chr2:39319475-39319740(-)$1	1	92	96	12.0000
(.((	chr3:133471878-133472126(+)$1	1	155	159	12.0000
).))	chr2:39341976-39342288(-)$1	1	253	257	12.0000
)(((	chr21:47563054-47563327(-)$1	1	137	141	12.0000
))).	chr10:105612309-105612596(-)$1	1	210	214	12.0000
(((.	chr20:43053332-43053660(+)$1	1	19	23	12.0000
)..)	chr14:39649897-39650168(+)$1	1	179	183	12.0000
....	chr16:89477764-89478075(-)$1	1	102	106	12.0000
.(((	chr17:77966395-77966674(-)$1	1	99	103	12.0000
....	chr19:50358955-50359213(+)$1	1	96	100	12.0000
..((	chr10:35100074-35100359(-)$1	1	34	38	12.0000
))).	chr12:9255991-9256215(-)$1	1	185	189	12.0000
((..	chr6:24248380-24248708(-)$1	1	4	8	12.0000
))))	chr10:77397106-77397369(+)$1	1	209	213	12.0000
((((	chr2:54847951-54848196(+)$1	1	42	46	12.0000
.(..	chr21:38472321-38472596(+)$1	1	34	38	12.0000
(...	chr17:45027640-45027916(+)$1	1	7	11	12.0000
((((	chr8:13106852-13107092(-)$1	1	16	20	12.0000
((((	chr21:46292397-46292681(-)$1	1	120	124	12.0000
(.(.	chr7:130586072-130586370(-)$1	1	55	59	12.0000
).).	chr8:103407155-103407458(-)$1	1	83	87	12.0000
.((.	chr19:56147574-56147853(+)$1	1	182	186	12.0000
....	chr16:31199149-31199406(+)$1	1	204	208	12.0000
(.(.	chr13:51012783-51013068(+)$1	1	45	49	12.0000
....	chr20:34223476-34223802(-)$1	1	3	7	12.0000
..))	chr6:129915659-129915949(-)$1	1	20	24	12.0000
...(	chr21:46285979-46286259(-)$1	1	0	4	12.0000
))..	chr2:236460922-236461164(+)$1	1	109	113	12.0000
.)))	chr13:41624122-41624410(-)$1	1	174	178	12.0000
(...	chr13:113394179-113394471(+)$1	1	39	43	12.0000
((((	chr3:133470344-133470616(+)$1	1	100	104	12.0000
((((	chr7:47373512-47373835(-)$1	1	17	21	12.0000
))))	chr19:35552995-35553278(+)$1	1	212	216	12.0000
((.(	chr22:29405372-29405628(+)$1	1	120	124	12.0000
.(((	chr17:70538609-70538885(-)$1	1	31	35	12.0000
(((.	chr1:43400318-43400604(-)$1	1	116	120	12.0000
...)	chr2:177137689-177137958(+)$1	1	89	93	12.0000
((.(	chr14:21692515-21692779(-)$1	1	60	64	12.0000
....	chr16:31199206-31199419(+)$1	1	147	151	12.0000
(.((	chr3:133468676-133468916(+)$1	1	4	8	12.0000
))))	chr8:144678831-144679086(-)$1	1	66	70	12.0000
)...	chr2:75777267-75777550(-)$1	1	274	278	12.0000
((((	chr2:188388268-188388584(-)$1	1	41	45	12.0000
...)	chr19:878833-879103(-)$1	1	81	85	12.0000
(((.	chr1:169089286-169089546(+)$1	1	24	28	12.0000

#PSSM
U : 0.64	u : 0.35	
G : 0.64	g : 0.35	
U : 0.63	u : 0.36	
G : 0.63	g : 0.36	

#score	1104.0
#seq	92
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_UTR_m2_run1.nuc.txt

#NT
UGAGGGG	chr4:1229196-1229413(-)$1	217	78	85	12.4423
ggcgggg	chr9:139560096-139560352(+)$1	256	54	61	12.4423
GGAGGCG	chr16:89349833-89350150(-)$1	317	107	114	12.8269
ggaggga	chr7:1006198-1006484(-)$1	286	1	8	11.8653
ggagggg	chr1:245026257-245026508(-)$1	251	148	155	16.4807
GGAGAGG	chr16:89348127-89348411(-)$1	284	267	274	13.3076
GGAGAGG	chr16:89350264-89350500(-)$1	236	208	215	13.3076
GGAGCGG	chr16:89349416-89349667(-)$1	251	112	119	12.9230
GAAGGGG	chr16:89347086-89347350(-)$1	264	110	117	12.2500
GGAGAGG	chr19:13264606-13264852(+)$1	246	217	224	13.3076
GGAGGUG	chr4:1230108-1230372(-)$1	264	4	11	12.8269
GGAGGCG	chr16:89346897-89347146(-)$1	249	229	236	12.8269
CGAGGGG	chr1:144931745-144931962(-)$1	217	46	53	12.2500
GGAGUGG	chr9:134351607-134351899(+)$1	292	24	31	12.8269
GGAGUGG	chr16:89346585-89346860(-)$1	275	28	35	12.8269
GGAGCGG	chr9:134350659-134350947(+)$1	288	110	117	12.9230
GGAGGGG	chr16:87736083-87736342(-)$1	259	188	195	16.4807
agagggg	chr19:39138284-39138537(+)$1	253	42	49	12.4423
GGAGGAG	chr7:1131054-1131302(-)$1	248	73	80	12.6346
GGAGGGG	chr19:55558594-55558900(+)$1	306	147	154	16.4807
GCAGGGG	chr8:94752265-94752496(-)$1	231	156	163	12.4423
UGAGGGG	chr7:1888838-1889078(-)$1	240	180	187	12.4423
ggaggag	chr7:100730254-100730506(+)$1	252	99	106	12.6346
GAAGGGG	chr16:89347152-89347422(-)$1	270	182	189	12.2500
GGAGCGG	chr19:2270320-2270598(+)$1	278	5	12	12.9230
GGAGAGG	chr16:89348751-89348973(-)$1	222	64	71	13.3076
GGAGAGG	chr16:89348867-89349114(-)$1	247	205	212	13.3076
GGAGAGG	chr4:1229669-1229957(-)$1	288	8	15	13.3076
GGCGGGG	chr7:1132622-1132891(-)$1	269	111	118	12.4423
ggugggg	chr22:50013845-50014161(-)$1	316	79	86	12.5384
GGUGGGG	chr4:759905-760180(-)$1	275	77	84	12.5384
GCAGGGG	chr22:21801092-21801341(+)$1	249	17	24	12.4423
ggaggug	chr14:105714222-105714487(-)$1	265	257	264	12.8269
AGAGGGG	chr9:134349890-134350156(+)$1	266	23	30	12.4423
GGUGGGG	chr22:20050697-20050991(+)$1	294	194	201	12.5384
GCAGGGG	chr16:87733212-87733515(-)$1	303	171	178	12.4423
GGAGGUG	chr16:89347792-89348081(-)$1	289	279	286	12.8269
GCAGGGG	chr16:87734510-87734761(-)$1	251	44	51	12.4423
AGAGGGG	chr9:134350836-134351116(+)$1	280	128	135	12.4423
GGAAGGG	chr5:71490506-71490752(+)$1	246	172	179	11.9615
GGAGGCG	chr16:89350039-89350291(-)$1	252	4	11	12.8269
GGAGGGG	chr8:94753045-94753286(-)$1	241	58	65	16.4807
UGAGGGG	chr10:71075446-71075713(+)$1	267	104	111	12.4423
GGUGGGG	chr8:94752885-94753182(-)$1	297	122	129	12.5384
GGAGGCG	chr16:89348634-89348889(-)$1	255	130	137	12.8269
GGAGGGG	chr5:71489866-71490112(+)$1	246	118	125	16.4807
GGAGAGG	chr16:89350125-89350439(-)$1	314	147	154	13.3076
GGACGGG	chr16:87735153-87735409(-)$1	256	27	34	11.8653
GGAAGGG	chr5:71490576-71490832(+)$1	256	102	109	11.9615
GGAGGUG	chr7:1131212-1131475(-)$1	263	27	34	12.8269
GGCGGGG	chr12:124809040-124809363(-)$1	323	246	253	12.4423

#otherMatches

#Struct PSSM
dd[ccc"	chr7:1887656-1887908(-)$1	252	114	121	11.8653
b]ccc22	chr4:1229196-1229413(-)$1	217	78	85	12.4423
cccqqqq	chr9:139560096-139560352(+)$1	256	54	61	12.4423
a333ddd	chr16:89349833-89350150(-)$1	317	107	114	12.8269
:::dddd	chr7:1006198-1006484(-)$1	286	1	8	11.8653
=======	chr1:245026257-245026508(-)$1	251	148	155	16.4807
:::::::	chr16:89348127-89348411(-)$1	284	267	274	13.3076
ee]ccc:	chr16:89350264-89350500(-)$1	236	208	215	13.3076
a]ccc33	chr16:89349416-89349667(-)$1	251	112	119	12.9230
iiiiiii	chr16:89347086-89347350(-)$1	264	110	117	12.2500
gg]a22b	chr19:13264606-13264852(+)$1	246	217	224	13.3076
GGGA{EE	chr4:1230108-1230372(-)$1	264	4	11	12.8269
FF}EEEE	chr16:89346897-89347146(-)$1	249	229	236	12.8269
qqqhhhh	chr1:144931745-144931962(-)$1	217	46	53	12.2500
''''fff	chr9:134351607-134351899(+)$1	292	24	31	12.8269
ffqqqqq	chr16:89346585-89346860(-)$1	275	28	35	12.8269
DD{DDDD	chr9:134350659-134350947(+)$1	288	110	117	12.9230
###ffff	chr16:87736083-87736342(-)$1	259	188	195	16.4807
::::::B	chr19:39138284-39138537(+)$1	253	42	49	12.4423
ddddbbe	chr7:1131054-1131302(-)$1	248	73	80	12.6346
bcccmmm	chr19:55558594-55558900(+)$1	306	147	154	16.4807
ccc####	chr8:94752265-94752496(-)$1	231	156	163	12.4423
]hhhhhh	chr7:1888838-1889078(-)$1	240	180	187	12.4423
GGGGGGG	chr7:100730254-100730506(+)$1	252	99	106	12.6346
iiiiiii	chr16:89347152-89347422(-)$1	270	182	189	12.2500
JJJJJJJ	chr19:2270320-2270598(+)$1	278	5	12	12.9230
cc]ffff	chr16:89348751-89348973(-)$1	222	64	71	13.3076
eeee[ap	chr16:89348867-89349114(-)$1	247	205	212	13.3076
cc[gggg	chr4:1229669-1229957(-)$1	288	8	15	13.3076
}IIIIII	chr7:1132622-1132891(-)$1	269	111	118	12.4423
]dddd::	chr22:50013845-50014161(-)$1	316	79	86	12.5384
[bb"""h	chr4:759905-760180(-)$1	275	77	84	12.5384
:eeeeeo	chr22:21801092-21801341(+)$1	249	17	24	12.4423
]dddd]b	chr14:105714222-105714487(-)$1	265	257	264	12.8269
===!!a!	chr9:134349890-134350156(+)$1	266	23	30	12.4423
JJJJJJJ	chr22:20050697-20050991(+)$1	294	194	201	12.5384
bb[cccn	chr16:87733212-87733515(-)$1	303	171	178	12.4423
cc]dddd	chr16:89347792-89348081(-)$1	289	279	286	12.8269
bb]eeee	chr16:87734510-87734761(-)$1	251	44	51	12.4423
ooobbcc	chr9:134350836-134351116(+)$1	280	128	135	12.4423
dd:EEEE	chr5:71490506-71490752(+)$1	246	172	179	11.9615
:::ccco	chr16:89350039-89350291(-)$1	252	4	11	12.8269
B{DDDD:	chr8:94753045-94753286(-)$1	241	58	65	16.4807
$$$ffff	chr10:71075446-71075713(+)$1	267	104	111	12.4423
ggGGGGG	chr8:94752885-94753182(-)$1	297	122	129	12.5384
g22a]bb	chr16:89348634-89348889(-)$1	255	130	137	12.8269
dd]dddd	chr5:71489866-71490112(+)$1	246	118	125	16.4807
ttttttt	chr16:89350125-89350439(-)$1	314	147	154	13.3076
333bb22	chr16:87735153-87735409(-)$1	256	27	34	11.8653
dd:EEEE	chr5:71490576-71490832(+)$1	256	102	109	11.9615
FFFFMMM	chr7:1131212-1131475(-)$1	263	27	34	12.8269
ffffccc	chr12:124809040-124809363(-)$1	323	246	253	12.4423

#DB
((.(((.	chr7:1887656-1887908(-)$1	1	114	121	11.8653
).)))..	chr4:1229196-1229413(-)$1	1	78	85	12.4423
(((....	chr9:139560096-139560352(+)$1	1	54	61	12.4423
)...)))	chr16:89349833-89350150(-)$1	1	107	114	12.8269
...((((	chr7:1006198-1006484(-)$1	1	1	8	11.8653
(((((((	chr1:245026257-245026508(-)$1	1	148	155	16.4807
.......	chr16:89348127-89348411(-)$1	1	267	274	13.3076
)).))).	chr16:89350264-89350500(-)$1	1	208	215	13.3076
).)))..	chr16:89349416-89349667(-)$1	1	112	119	12.9230
)))))))	chr16:89347086-89347350(-)$1	1	110	117	12.2500
)).)..)	chr19:13264606-13264852(+)$1	1	217	224	13.3076
((((.((	chr4:1230108-1230372(-)$1	1	4	11	12.8269
)).))))	chr16:89346897-89347146(-)$1	1	229	236	12.8269
...))))	chr1:144931745-144931962(-)$1	1	46	53	12.2500
....(((	chr9:134351607-134351899(+)$1	1	24	31	12.8269
((.....	chr16:89346585-89346860(-)$1	1	28	35	12.8269
((.((((	chr9:134350659-134350947(+)$1	1	110	117	12.9230
...((((	chr16:87736083-87736342(-)$1	1	188	195	16.4807
......(	chr19:39138284-39138537(+)$1	1	42	49	12.4423
))))(((	chr7:1131054-1131302(-)$1	1	73	80	12.6346
((((...	chr19:55558594-55558900(+)$1	1	147	154	16.4807
(((....	chr8:94752265-94752496(-)$1	1	156	163	12.4423
.))))))	chr7:1888838-1889078(-)$1	1	180	187	12.4423
(((((((	chr7:100730254-100730506(+)$1	1	99	106	12.6346
)))))))	chr16:89347152-89347422(-)$1	1	182	189	12.2500
(((((((	chr19:2270320-2270598(+)$1	1	5	12	12.9230
)).))))	chr16:89348751-89348973(-)$1	1	64	71	13.3076
((((.(.	chr16:89348867-89349114(-)$1	1	205	212	13.3076
((.((((	chr4:1229669-1229957(-)$1	1	8	15	13.3076
.))))))	chr7:1132622-1132891(-)$1	1	111	118	12.4423
.))))..	chr22:50013845-50014161(-)$1	1	79	86	12.5384
.((...(	chr4:759905-760180(-)$1	1	77	84	12.5384
.(((((.	chr22:21801092-21801341(+)$1	1	17	24	12.4423
.)))).)	chr14:105714222-105714487(-)$1	1	257	264	12.8269
(((..(.	chr9:134349890-134350156(+)$1	1	23	30	12.4423
)))))))	chr22:20050697-20050991(+)$1	1	194	201	12.5384
((.(((.	chr16:87733212-87733515(-)$1	1	171	178	12.4423
)).))))	chr16:89347792-89348081(-)$1	1	279	286	12.8269
)).))))	chr16:87734510-87734761(-)$1	1	44	51	12.4423
...))))	chr9:134350836-134351116(+)$1	1	128	135	12.4423
)).))))	chr5:71490506-71490752(+)$1	1	172	179	11.9615
...(((.	chr16:89350039-89350291(-)$1	1	4	11	12.8269
(.((((.	chr8:94753045-94753286(-)$1	1	58	65	16.4807
...((((	chr10:71075446-71075713(+)$1	1	104	111	12.4423
))(((((	chr8:94752885-94753182(-)$1	1	122	129	12.5384
)..).))	chr16:89348634-89348889(-)$1	1	130	137	12.8269
)).))))	chr5:71489866-71490112(+)$1	1	118	125	16.4807
.......	chr16:89350125-89350439(-)$1	1	147	154	13.3076
...))..	chr16:87735153-87735409(-)$1	1	27	34	11.8653
)).))))	chr5:71490576-71490832(+)$1	1	102	109	11.9615
((((...	chr7:1131212-1131475(-)$1	1	27	34	12.8269
(((((((	chr12:124809040-124809363(-)$1	1	246	253	12.4423

#PSSM
G : 0.75	g : 0.11	U : 0.05	A : 0.03	C : 0.01	a : 0.01	
G : 0.75	g : 0.13	C : 0.07	A : 0.03	
A : 0.76	a : 0.09	U : 0.05	C : 0.03	c : 0.01	u : 0.01	
G : 0.80	g : 0.13	A : 0.03	C : 0.01	
G : 0.63	g : 0.13	A : 0.13	C : 0.05	U : 0.03	
G : 0.71	g : 0.09	C : 0.07	U : 0.05	A : 0.01	a : 0.01	u : 0.01	
G : 0.84	g : 0.11	A : 0.01	a : 0.01	

#score	676.038461538462
#seq	52
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_transcript_m1_run1.nuc.txt

#NT
UACUAACA	chr7:151889653-151889960(-)$1	307	132	140	21.3148
uacuaaaa	chr2:201694708-201694936(+)$1	228	45	53	18.2592
UACUAACA	chr18:43601161-43601457(-)$1	296	110	118	21.3148
UACUAACU	chr7:106921488-106921813(-)$1	325	116	124	18.3518
uacuaaua	chr8:30714384-30714674(-)$1	290	115	123	18.5370
UACUAACA	chr15:45897340-45897615(+)$1	275	114	122	21.3148
uacuaacc	chr8:130537455-130537752(-)$1	297	110	118	18.1666
UACUAACA	chrX:123512184-123512511(-)$1	327	173	181	21.3148
UACUAACA	chr4:79753419-79753687(+)$1	268	127	135	21.3148
UACUAAUA	chr4:135230858-135231171(-)$1	313	148	156	18.5370
UACUAACU	chr1:207885677-207885934(+)$1	257	104	112	18.3518
uacuaaaa	chr7:149181726-149182037(-)$1	311	132	140	18.2592
UACUAACA	chr5:65228877-65229148(+)$1	271	128	136	21.3148
uacuaaca	chr21:47619744-47620061(-)$1	317	150	158	21.3148
UACUAACA	chr14:31082969-31083279(+)$1	310	151	159	21.3148
UACUAAAA	chr19:10919215-10919455(+)$1	240	148	156	18.2592
UACUAAUA	chr16:20776980-20777273(+)$1	293	130	138	18.5370
UACUAACA	chr3:10041946-10042249(+)$1	303	127	135	21.3148
UACUAAUA	chr8:105585629-105585908(-)$1	279	79	87	18.5370
UACUAAUA	chr12:74635242-74635661(-)$1	419	137	145	18.5370
uacuaaca	chr22:29341092-29341379(+)$1	287	128	136	21.3148
UACUAACA	chr8:64122488-64122745(+)$1	257	108	116	21.3148
UACUAACA	chr7:129832224-129832519(-)$1	295	140	148	21.3148
UACUAACC	chr13:98010162-98010426(+)$1	264	97	105	18.1666
UACUAACU	chr12:30872369-30872641(-)$1	272	67	75	18.3518
UACUAACA	chr16:3807336-3807623(-)$1	287	142	150	21.3148
UACUAACA	chr1:212246846-212247149(+)$1	303	139	147	21.3148
UACUAACU	chr1:114520116-114520417(+)$1	301	142	150	18.3518
UACUAACU	chr2:70069496-70069795(+)$1	299	153	161	18.3518
UACUAAUA	chr3:167762062-167762343(-)$1	281	111	119	18.5370
UACUAACU	chr1:115282810-115283113(-)$1	303	123	131	18.3518
uacuaaca	chrX:135762397-135762727(-)$1	330	167	175	21.3148
uacuaacu	chr20:50953911-50954202(+)$1	291	107	115	18.3518
UACUAACC	chr4:170639826-170640162(+)$1	336	130	138	18.1666
UACUAACA	chr8:100049343-100049634(+)$1	291	122	130	21.3148
uacuAACA	chr11:85342421-85342799(+)$1	378	160	168	21.3148
UACUAAAA	chr1:21093878-21094131(-)$1	253	101	109	18.2592
UACUAACC	chr1:143399049-143399412(-)$1	363	180	188	18.1666
UACUAAUA	chr8:106732567-106732900(+)$1	333	143	151	18.5370
uacuaaca	chr8:91328420-91328734(+)$1	314	132	140	21.3148
UACUAACA	chr10:103573074-103573369(-)$1	295	127	135	21.3148
UACUAACA	chr10:5762147-5762404(+)$1	257	158	166	21.3148
uacuaAAA	chr18:2582383-2582715(+)$1	332	98	106	18.2592
UACUAAUA	chr20:57475320-57475575(+)$1	255	45	53	18.5370
UACUAACA	chr7:110759470-110759780(-)$1	310	130	138	21.3148
UACUAACA	chr1:193014085-193014359(-)$1	274	105	113	21.3148
UACUAACA	chrM:7632-7836(+)$1	204	109	117	21.3148
uacuaaaa	chr1:201928796-201929099(+)$1	303	138	146	18.2592
uacuaacu	chr9:134810279-134810613(-)$1	334	94	102	18.3518
UACUAACA	chr6:88322571-88322905(+)$1	334	140	148	21.3148
UACUAACC	chr4:431205-431494(-)$1	289	115	123	18.1666
UACUAAUA	chr3:193347619-193347891(+)$1	272	94	102	18.5370
UACUAACA	chr14:97001018-97001322(+)$1	304	115	123	21.3148

#otherMatches

#Struct PSSM
HHHHPPPP	chr12:70712145-70712419(+)$1	274	114	122	18.1666
eee22bb]	chr7:151889653-151889960(-)$1	307	132	140	21.3148
WWWWWWWW	chr2:201694708-201694936(+)$1	228	45	53	18.2592
CLLLEEEE	chr18:43601161-43601457(-)$1	296	110	118	21.3148
NNNNDDDD	chr7:106921488-106921813(-)$1	325	116	124	18.3518
::::::::	chr8:30714384-30714674(-)$1	290	115	123	18.5370
::::::cc	chr15:45897340-45897615(+)$1	275	114	122	21.3148
H:::::::	chr8:130537455-130537752(-)$1	297	110	118	18.1666
e!!eeeee	chrX:123512184-123512511(-)$1	327	173	181	21.3148
^^^^^^^c	chr4:79753419-79753687(+)$1	268	127	135	21.3148
WWWWWWWW	chr4:135230858-135231171(-)$1	313	148	156	18.5370
tttttttt	chr1:207885677-207885934(+)$1	257	104	112	18.3518
dd::::::	chr7:149181726-149182037(-)$1	311	132	140	18.2592
9999dddd	chr5:65228877-65229148(+)$1	271	128	136	21.3148
fffff###	chr21:47619744-47620061(-)$1	317	150	158	21.3148
hwwwwwww	chr14:31082969-31083279(+)$1	310	151	159	21.3148
^^^^^^^^	chr19:10919215-10919455(+)$1	240	148	156	18.2592
ddd22ggg	chr16:20776980-20777273(+)$1	293	130	138	18.5370
::::::::	chr3:10041946-10042249(+)$1	303	127	135	21.3148
f:dddd""	chr8:105585629-105585908(-)$1	279	79	87	18.5370
^^^^^^^^	chr12:74635242-74635661(-)$1	419	137	145	18.5370
eeeeeeee	chr22:29341092-29341379(+)$1	287	128	136	21.3148
JJDDDD{D	chr8:64122488-64122745(+)$1	257	108	116	21.3148
:::::::D	chr7:129832224-129832519(-)$1	295	140	148	21.3148
qqqqqbb6	chr13:98010162-98010426(+)$1	264	97	105	18.1666
ee:::::d	chr12:30872369-30872641(-)$1	272	67	75	18.3518
::::::::	chr16:3807336-3807623(-)$1	287	142	150	21.3148
::::::::	chr1:212246846-212247149(+)$1	303	139	147	21.3148
####gggg	chr1:114520116-114520417(+)$1	301	142	150	18.3518
%ggggggg	chr2:70069496-70069795(+)$1	299	153	161	18.3518
55555ccc	chr3:167762062-167762343(-)$1	281	111	119	18.5370
qbb55555	chr1:115282810-115283113(-)$1	303	123	131	18.3518
fffflllf	chrX:135762397-135762727(-)$1	330	167	175	21.3148
KGGGGGGG	chr20:50953911-50954202(+)$1	291	107	115	18.3518
::::::::	chr4:170639826-170640162(+)$1	336	130	138	18.1666
d[cccmmm	chr8:100049343-100049634(+)$1	291	122	130	21.3148
ddddnnnn	chr11:85342421-85342799(+)$1	378	160	168	21.3148
E:::::::	chr1:21093878-21094131(-)$1	253	101	109	18.2592
dddduuuu	chr1:143399049-143399412(-)$1	363	180	188	18.1666
nnneeeee	chr8:106732567-106732900(+)$1	333	143	151	18.5370
d]a22a]i	chr8:91328420-91328734(+)$1	314	132	140	21.3148
!dddd[cc	chr10:103573074-103573369(-)$1	295	127	135	21.3148
%cccnnnn	chr10:5762147-5762404(+)$1	257	158	166	21.3148
5555gggg	chr18:2582383-2582715(+)$1	332	98	106	18.2592
^^^^^^^^	chr20:57475320-57475575(+)$1	255	45	53	18.5370
::gggggg	chr7:110759470-110759780(-)$1	310	130	138	21.3148
ooccc]dd	chr1:193014085-193014359(-)$1	274	105	113	21.3148
::::::::	chrM:7632-7836(+)$1	204	109	117	21.3148
!!dddd^^	chr1:201928796-201929099(+)$1	303	138	146	18.2592
cc]dddd6	chr9:134810279-134810613(-)$1	334	94	102	18.3518
::::::::	chr6:88322571-88322905(+)$1	334	140	148	21.3148
::::::GG	chr4:431205-431494(-)$1	289	115	123	18.1666
hhhhhhh:	chr3:193347619-193347891(+)$1	272	94	102	18.5370
[ccc[ccc	chr14:97001018-97001322(+)$1	304	115	123	21.3148

#DB
((((....	chr12:70712145-70712419(+)$1	1	114	122	18.1666
)))..)).	chr7:151889653-151889960(-)$1	1	132	140	21.3148
........	chr2:201694708-201694936(+)$1	1	45	53	18.2592
(...((((	chr18:43601161-43601457(-)$1	1	110	118	21.3148
....((((	chr7:106921488-106921813(-)$1	1	116	124	18.3518
........	chr8:30714384-30714674(-)$1	1	115	123	18.5370
......((	chr15:45897340-45897615(+)$1	1	114	122	21.3148
).......	chr8:130537455-130537752(-)$1	1	110	118	18.1666
(..(((((	chrX:123512184-123512511(-)$1	1	173	181	21.3148
.......)	chr4:79753419-79753687(+)$1	1	127	135	21.3148
........	chr4:135230858-135231171(-)$1	1	148	156	18.5370
........	chr1:207885677-207885934(+)$1	1	104	112	18.3518
))......	chr7:149181726-149182037(-)$1	1	132	140	18.2592
....))))	chr5:65228877-65229148(+)$1	1	128	136	21.3148
(((((...	chr21:47619744-47620061(-)$1	1	150	158	21.3148
(.......	chr14:31082969-31083279(+)$1	1	151	159	21.3148
........	chr19:10919215-10919455(+)$1	1	148	156	18.2592
)))..)))	chr16:20776980-20777273(+)$1	1	130	138	18.5370
........	chr3:10041946-10042249(+)$1	1	127	135	21.3148
).((((..	chr8:105585629-105585908(-)$1	1	79	87	18.5370
........	chr12:74635242-74635661(-)$1	1	137	145	18.5370
))))))))	chr22:29341092-29341379(+)$1	1	128	136	21.3148
((((((.(	chr8:64122488-64122745(+)$1	1	108	116	21.3148
.......(	chr7:129832224-129832519(-)$1	1	140	148	21.3148
.....)).	chr13:98010162-98010426(+)$1	1	97	105	18.1666
)).....(	chr12:30872369-30872641(-)$1	1	67	75	18.3518
........	chr16:3807336-3807623(-)$1	1	142	150	21.3148
........	chr1:212246846-212247149(+)$1	1	139	147	21.3148
....((((	chr1:114520116-114520417(+)$1	1	142	150	18.3518
.(((((((	chr2:70069496-70069795(+)$1	1	153	161	18.3518
.....)))	chr3:167762062-167762343(-)$1	1	111	119	18.5370
.)).....	chr1:115282810-115283113(-)$1	1	123	131	18.3518
((((...)	chrX:135762397-135762727(-)$1	1	167	175	21.3148
.(((((((	chr20:50953911-50954202(+)$1	1	107	115	18.3518
........	chr4:170639826-170640162(+)$1	1	130	138	18.1666
(.(((...	chr8:100049343-100049634(+)$1	1	122	130	21.3148
((((....	chr11:85342421-85342799(+)$1	1	160	168	21.3148
(.......	chr1:21093878-21094131(-)$1	1	101	109	18.2592
((((....	chr1:143399049-143399412(-)$1	1	180	188	18.1666
...)))))	chr8:106732567-106732900(+)$1	1	143	151	18.5370
).)..).)	chr8:91328420-91328734(+)$1	1	132	140	21.3148
.((((.((	chr10:103573074-103573369(-)$1	1	127	135	21.3148
.(((....	chr10:5762147-5762404(+)$1	1	158	166	21.3148
....))))	chr18:2582383-2582715(+)$1	1	98	106	18.2592
........	chr20:57475320-57475575(+)$1	1	45	53	18.5370
..((((((	chr7:110759470-110759780(-)$1	1	130	138	21.3148
..))).))	chr1:193014085-193014359(-)$1	1	105	113	21.3148
........	chrM:7632-7836(+)$1	1	109	117	21.3148
..((((..	chr1:201928796-201929099(+)$1	1	138	146	18.2592
)).)))).	chr9:134810279-134810613(-)$1	1	94	102	18.3518
........	chr6:88322571-88322905(+)$1	1	140	148	21.3148
......))	chr4:431205-431494(-)$1	1	115	123	18.1666
))))))).	chr3:193347619-193347891(+)$1	1	94	102	18.5370
.(((.(((	chr14:97001018-97001322(+)$1	1	115	123	21.3148

#PSSM
U : 0.74	u : 0.25	
A : 0.74	a : 0.25	
C : 0.74	c : 0.25	
U : 0.74	u : 0.25	
A : 0.75	a : 0.24	
A : 0.77	a : 0.22	
C : 0.59	U : 0.14	c : 0.12	a : 0.05	A : 0.05	u : 0.01	
A : 0.59	a : 0.14	U : 0.11	C : 0.09	u : 0.03	c : 0.01	

#score	1065.0740740740728
#seq	54
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_CDS_m1_run2.nuc.txt

#NT
UGU	chr1:109778590-109778828(+)$1	238	19	22	9.0000
UGU	chr4:84393290-84393535(-)$1	245	151	154	9.0000
UGU	chr22:19711290-19711563(+)$1	273	33	36	9.0000
UGU	chr15:28508036-28508317(-)$1	281	8	11	9.0000
UGU	chr21:33755670-33755927(-)$1	257	13	16	9.0000
UGU	chr9:19378710-19378941(-)$1	231	0	3	9.0000
UGU	chr17:4880247-4880504(-)$1	257	35	38	9.0000
UGU	chr11:75111739-75111951(+)$1	212	0	3	9.0000
UGU	chr6:74227882-74228087(-)$1	205	147	150	9.0000
UGU	chr6:31832515-31832770(-)$1	255	0	3	9.0000
UGU	chr6:32942405-32942611(+)$1	206	0	3	9.0000
UGU	chr8:48874560-48874774(+)$1	214	0	3	9.0000
UGU	chr9:19378749-19378959(-)$1	210	16	19	9.0000
UGU	chr17:26677421-26677682(-)$1	261	8	11	9.0000
UGU	chr6:32942411-32942625(+)$1	214	66	69	9.0000
UGU	chrX:118603816-118604052(+)$1	236	1	4	9.0000
UGU	chr12:111885356-111885618(+)$1	262	113	116	9.0000
UGU	chr12:120600628-120600859(-)$1	231	4	7	9.0000
UGU	chr12:120600773-120601011(-)$1	238	39	42	9.0000
UGU	chr8:144102298-144102508(+)$1	210	23	26	9.0000
UGU	chr9:131733051-131733332(+)$1	281	1	4	9.0000
UGU	chr1:109778576-109778790(+)$1	214	33	36	9.0000
UGU	chr17:57756765-57756981(+)$1	216	59	62	9.0000
UGU	chr6:35438378-35438582(+)$1	204	31	34	9.0000
UGU	chr19:42753699-42753975(-)$1	276	18	21	9.0000
UGU	chr9:80923350-80923576(+)$1	226	11	14	9.0000
UGU	chrX:118603782-118604001(+)$1	219	35	38	9.0000
UGU	chr12:25260648-25260895(+)$1	247	33	36	9.0000
UGU	chr11:618786-618990(-)$1	204	93	96	9.0000
UGU	chr6:35438405-35438619(+)$1	214	4	7	9.0000
UGU	chr17:40642549-40642755(+)$1	206	119	122	9.0000
UGU	chr2:132241627-132241859(-)$1	232	48	51	9.0000
UGU	chr2:130940170-130940445(+)$1	275	17	20	9.0000
UGU	chr20:62597552-62597775(-)$1	223	36	39	9.0000
UGU	chr2:132249347-132249629(-)$1	282	20	23	9.0000
UGU	chr12:56705012-56705257(-)$1	245	13	16	9.0000
UGU	chr2:130940245-130940449(+)$1	204	19	22	9.0000
UGU	chrX:118603801-118604016(+)$1	215	16	19	9.0000
UGU	chr6:32942372-32942577(+)$1	205	33	36	9.0000
UGU	chr4:152024046-152024272(+)$1	226	31	34	9.0000
UGU	chr2:132241659-132241891(-)$1	232	2	5	9.0000
UGU	chr6:74227864-74228069(-)$1	205	129	132	9.0000
UGU	chrX:118603744-118603982(+)$1	238	73	76	9.0000
UGU	chr6:32011424-32011682(-)$1	258	4	7	9.0000
UGU	chr8:48874574-48874819(+)$1	245	27	30	9.0000
UGU	chr2:130947973-130948203(+)$1	230	48	51	9.0000
UGU	chr4:84406090-84406327(-)$1	237	78	81	9.0000
UGU	chrX:118603724-118603944(+)$1	220	18	21	9.0000
UGU	chr12:111885229-111885448(+)$1	219	45	48	9.0000
UGU	chr1:47124264-47124510(-)$1	246	69	72	9.0000
UGU	chr17:27013637-27013892(+)$1	255	45	48	9.0000
UGU	chr11:75111703-75111906(+)$1	203	22	25	9.0000
UGU	chr9:19378796-19379003(-)$1	207	4	7	9.0000
UGU	chr11:73687821-73688072(-)$1	251	62	65	9.0000
UGU	chr9:19378810-19379016(-)$1	206	17	20	9.0000
UGU	chr11:77780878-77781164(-)$1	286	5	8	9.0000
UGU	chr9:19378783-19378993(-)$1	210	17	20	9.0000
UGU	chr6:32942369-32942572(+)$1	203	36	39	9.0000
UGU	chr5:149199896-149200204(+)$1	308	88	91	9.0000
UGU	chr12:112681130-112681368(-)$1	238	23	26	9.0000
UGU	chr9:19378759-19378966(-)$1	207	23	26	9.0000
UGU	chr9:80923376-80923595(+)$1	219	15	18	9.0000
UGU	chr9:19379384-19379593(-)$1	209	125	128	9.0000
UGU	chr15:48623653-48623910(+)$1	257	228	231	9.0000
UGU	chr6:4115994-4116215(-)$1	221	8	11	9.0000
UGU	chr1:151279946-151280197(-)$1	251	105	108	9.0000
UGU	chrX:153662613-153662886(+)$1	273	11	14	9.0000
UGU	chr1:47130827-47131030(-)$1	203	88	91	9.0000
UGU	chr7:2275086-2275300(-)$1	214	28	31	9.0000
UGU	chr1:47130830-47131038(-)$1	208	96	99	9.0000
UGU	chr17:40642518-40642749(+)$1	231	3	6	9.0000
UGU	chr11:75111730-75111939(+)$1	209	9	12	9.0000
UGU	chr5:179992754-179993007(+)$1	253	33	36	9.0000
UGU	chr4:140265321-140265529(+)$1	208	120	123	9.0000
UGU	chr11:65402390-65402690(+)$1	300	34	37	9.0000
UGU	chr9:95032104-95032318(-)$1	214	30	33	9.0000
UGU	chr22:38864098-38864346(+)$1	248	15	18	9.0000
UGU	chr17:7127538-7127784(+)$1	246	61	64	9.0000
UGU	chr11:86048369-86048676(+)$1	307	0	3	9.0000
UGU	chr6:4116015-4116258(-)$1	243	51	54	9.0000
UGU	chr22:38864146-38864387(+)$1	241	99	102	9.0000
UGU	chr9:19378741-19378949(-)$1	208	6	9	9.0000
UGU	chr11:618790-619008(-)$1	218	111	114	9.0000
UGU	chr12:112681168-112681377(-)$1	209	32	35	9.0000
UGU	chr2:130947941-130948173(+)$1	232	2	5	9.0000
UGU	chr9:19378803-19379010(-)$1	207	11	14	9.0000
UGU	chr4:152024028-152024246(+)$1	218	17	20	9.0000
UGU	chr1:38464955-38465202(-)$1	247	12	15	9.0000
UGU	chr9:95032065-95032304(-)$1	239	16	19	9.0000
ugu	chr8:144102632-144102864(+)$1	232	28	31	9.0000
UGU	chr17:40646249-40646468(+)$1	219	35	38	9.0000
UGU	chr6:74227869-74228082(-)$1	213	142	145	9.0000
UGU	chr7:2278952-2279192(-)$1	240	1	4	9.0000
UGU	chr12:56522137-56522375(+)$1	238	166	169	9.0000
UGU	chr6:74227976-74228204(-)$1	228	19	22	9.0000
UGU	chr17:26678587-26678806(-)$1	219	53	56	9.0000
ugu	chr8:144102630-144102832(+)$1	202	30	33	9.0000
UGU	chr9:140446425-140446714(+)$1	289	12	15	9.0000
UGU	chr11:75111706-75111930(+)$1	224	19	22	9.0000

#otherMatches

#Struct PSSM
hhh	chr9:19378793-19378996(-)$1	203	20	23	9.0000
ggg	chr1:109778590-109778828(+)$1	238	19	22	9.0000
&&&	chr4:84393290-84393535(-)$1	245	151	154	9.0000
qbb	chr22:19711290-19711563(+)$1	273	33	36	9.0000
Fff	chr15:28508036-28508317(-)$1	281	8	11	9.0000
oof	chr21:33755670-33755927(-)$1	257	13	16	9.0000
:::	chr9:19378710-19378941(-)$1	231	0	3	9.0000
:DD	chr17:4880247-4880504(-)$1	257	35	38	9.0000
DDD	chr11:75111739-75111951(+)$1	212	0	3	9.0000
qqq	chr6:74227882-74228087(-)$1	205	147	150	9.0000
A{F	chr6:31832515-31832770(-)$1	255	0	3	9.0000
:A{	chr6:32942405-32942611(+)$1	206	0	3	9.0000
:::	chr8:48874560-48874774(+)$1	214	0	3	9.0000
ccc	chr9:19378749-19378959(-)$1	210	16	19	9.0000
lff	chr17:26677421-26677682(-)$1	261	8	11	9.0000
33c	chr6:32942411-32942625(+)$1	214	66	69	9.0000
:::	chrX:118603816-118604052(+)$1	236	1	4	9.0000
{A{	chr12:111885356-111885618(+)$1	262	113	116	9.0000
a[d	chr12:120600628-120600859(-)$1	231	4	7	9.0000
II{	chr12:120600773-120601011(-)$1	238	39	42	9.0000
FF{	chr8:144102298-144102508(+)$1	210	23	26	9.0000
eee	chr9:131733051-131733332(+)$1	281	1	4	9.0000
ggg	chr1:109778576-109778790(+)$1	214	33	36	9.0000
OOD	chr17:57756765-57756981(+)$1	216	59	62	9.0000
ccc	chr6:35438378-35438582(+)$1	204	31	34	9.0000
d[e	chr19:42753699-42753975(-)$1	276	18	21	9.0000
GGG	chr9:80923350-80923576(+)$1	226	11	14	9.0000
MMD	chrX:118603782-118604001(+)$1	219	35	38	9.0000
f]a	chr12:25260648-25260895(+)$1	247	33	36	9.0000
:ff	chr11:618786-618990(-)$1	204	93	96	9.0000
ccc	chr6:35438405-35438619(+)$1	214	4	7	9.0000
=zz	chr17:40642549-40642755(+)$1	206	119	122	9.0000
:bb	chr2:132241627-132241859(-)$1	232	48	51	9.0000
EEE	chr2:130940170-130940445(+)$1	275	17	20	9.0000
&cc	chr20:62597552-62597775(-)$1	223	36	39	9.0000
:::	chr2:132249347-132249629(-)$1	282	20	23	9.0000
GGG	chr12:56705012-56705257(-)$1	245	13	16	9.0000
c]b	chr2:130940245-130940449(+)$1	204	19	22	9.0000
I::	chrX:118603801-118604016(+)$1	215	16	19	9.0000
EEE	chr6:32942372-32942577(+)$1	205	33	36	9.0000
eee	chr4:152024046-152024272(+)$1	226	31	34	9.0000
dd!	chr2:132241659-132241891(-)$1	232	2	5	9.0000
qqq	chr6:74227864-74228069(-)$1	205	129	132	9.0000
:::	chrX:118603744-118603982(+)$1	238	73	76	9.0000
GGG	chr6:32011424-32011682(-)$1	258	4	7	9.0000
gg:	chr8:48874574-48874819(+)$1	245	27	30	9.0000
:bb	chr2:130947973-130948203(+)$1	230	48	51	9.0000
mmm	chr4:84406090-84406327(-)$1	237	78	81	9.0000
{DD	chrX:118603724-118603944(+)$1	220	18	21	9.0000
hhh	chr12:111885229-111885448(+)$1	219	45	48	9.0000
EEE	chr1:47124264-47124510(-)$1	246	69	72	9.0000
eee	chr17:27013637-27013892(+)$1	255	45	48	9.0000
qdd	chr11:75111703-75111906(+)$1	203	22	25	9.0000
C{C	chr9:19378796-19379003(-)$1	207	4	7	9.0000
ee[	chr11:73687821-73688072(-)$1	251	62	65	9.0000
FF{	chr9:19378810-19379016(-)$1	206	17	20	9.0000
EEE	chr11:77780878-77781164(-)$1	286	5	8	9.0000
hhh	chr9:19378783-19378993(-)$1	210	17	20	9.0000
EEE	chr6:32942369-32942572(+)$1	203	36	39	9.0000
eeo	chr5:149199896-149200204(+)$1	308	88	91	9.0000
""d	chr12:112681130-112681368(-)$1	238	23	26	9.0000
eee	chr9:19378759-19378966(-)$1	207	23	26	9.0000
%%%	chr9:80923376-80923595(+)$1	219	15	18	9.0000
dcc	chr9:19379384-19379593(-)$1	209	125	128	9.0000
eee	chr15:48623653-48623910(+)$1	257	228	231	9.0000
fff	chr6:4115994-4116215(-)$1	221	8	11	9.0000
3bb	chr1:151279946-151280197(-)$1	251	105	108	9.0000
cc:	chrX:153662613-153662886(+)$1	273	11	14	9.0000
ccc	chr1:47130827-47131030(-)$1	203	88	91	9.0000
LEE	chr7:2275086-2275300(-)$1	214	28	31	9.0000
ccc	chr1:47130830-47131038(-)$1	208	96	99	9.0000
eee	chr17:40642518-40642749(+)$1	231	3	6	9.0000
DDD	chr11:75111730-75111939(+)$1	209	9	12	9.0000
mmm	chr5:179992754-179993007(+)$1	253	33	36	9.0000
ccc	chr4:140265321-140265529(+)$1	208	120	123	9.0000
:EE	chr11:65402390-65402690(+)$1	300	34	37	9.0000
:dd	chr9:95032104-95032318(-)$1	214	30	33	9.0000
EMM	chr22:38864098-38864346(+)$1	248	15	18	9.0000
dd!	chr17:7127538-7127784(+)$1	246	61	64	9.0000
fff	chr11:86048369-86048676(+)$1	307	0	3	9.0000
fff	chr6:4116015-4116258(-)$1	243	51	54	9.0000
GGG	chr22:38864146-38864387(+)$1	241	99	102	9.0000
::B	chr9:19378741-19378949(-)$1	208	6	9	9.0000
:ff	chr11:618790-619008(-)$1	218	111	114	9.0000
""d	chr12:112681168-112681377(-)$1	209	32	35	9.0000
::e	chr2:130947941-130948173(+)$1	232	2	5	9.0000
{FF	chr9:19378803-19379010(-)$1	207	11	14	9.0000
[a[	chr4:152024028-152024246(+)$1	218	17	20	9.0000
ggg	chr1:38464955-38465202(-)$1	247	12	15	9.0000
GGG	chr9:95032065-95032304(-)$1	239	16	19	9.0000
EEE	chr8:144102632-144102864(+)$1	232	28	31	9.0000
fff	chr17:40646249-40646468(+)$1	219	35	38	9.0000
qqq	chr6:74227869-74228082(-)$1	213	142	145	9.0000
GGG	chr7:2278952-2279192(-)$1	240	1	4	9.0000
mmm	chr12:56522137-56522375(+)$1	238	166	169	9.0000
$$$	chr6:74227976-74228204(-)$1	228	19	22	9.0000
fff	chr17:26678587-26678806(-)$1	219	53	56	9.0000
EEE	chr8:144102630-144102832(+)$1	202	30	33	9.0000
D:F	chr9:140446425-140446714(+)$1	289	12	15	9.0000
{EE	chr11:75111706-75111930(+)$1	224	19	22	9.0000

#DB
(((	chr9:19378793-19378996(-)$1	1	20	23	9.0000
)))	chr1:109778590-109778828(+)$1	1	19	22	9.0000
...	chr4:84393290-84393535(-)$1	1	151	154	9.0000
.))	chr22:19711290-19711563(+)$1	1	33	36	9.0000
(((	chr15:28508036-28508317(-)$1	1	8	11	9.0000
..)	chr21:33755670-33755927(-)$1	1	13	16	9.0000
...	chr9:19378710-19378941(-)$1	1	0	3	9.0000
.((	chr17:4880247-4880504(-)$1	1	35	38	9.0000
(((	chr11:75111739-75111951(+)$1	1	0	3	9.0000
...	chr6:74227882-74228087(-)$1	1	147	150	9.0000
(.(	chr6:31832515-31832770(-)$1	1	0	3	9.0000
.(.	chr6:32942405-32942611(+)$1	1	0	3	9.0000
...	chr8:48874560-48874774(+)$1	1	0	3	9.0000
)))	chr9:19378749-19378959(-)$1	1	16	19	9.0000
.))	chr17:26677421-26677682(-)$1	1	8	11	9.0000
..)	chr6:32942411-32942625(+)$1	1	66	69	9.0000
...	chrX:118603816-118604052(+)$1	1	1	4	9.0000
.(.	chr12:111885356-111885618(+)$1	1	113	116	9.0000
(.(	chr12:120600628-120600859(-)$1	1	4	7	9.0000
((.	chr12:120600773-120601011(-)$1	1	39	42	9.0000
((.	chr8:144102298-144102508(+)$1	1	23	26	9.0000
(((	chr9:131733051-131733332(+)$1	1	1	4	9.0000
)))	chr1:109778576-109778790(+)$1	1	33	36	9.0000
..(	chr17:57756765-57756981(+)$1	1	59	62	9.0000
(((	chr6:35438378-35438582(+)$1	1	31	34	9.0000
(.(	chr19:42753699-42753975(-)$1	1	18	21	9.0000
(((	chr9:80923350-80923576(+)$1	1	11	14	9.0000
..(	chrX:118603782-118604001(+)$1	1	35	38	9.0000
).)	chr12:25260648-25260895(+)$1	1	33	36	9.0000
.((	chr11:618786-618990(-)$1	1	93	96	9.0000
(((	chr6:35438405-35438619(+)$1	1	4	7	9.0000
(..	chr17:40642549-40642755(+)$1	1	119	122	9.0000
.((	chr2:132241627-132241859(-)$1	1	48	51	9.0000
(((	chr2:130940170-130940445(+)$1	1	17	20	9.0000
.((	chr20:62597552-62597775(-)$1	1	36	39	9.0000
...	chr2:132249347-132249629(-)$1	1	20	23	9.0000
(((	chr12:56705012-56705257(-)$1	1	13	16	9.0000
).)	chr2:130940245-130940449(+)$1	1	19	22	9.0000
(..	chrX:118603801-118604016(+)$1	1	16	19	9.0000
(((	chr6:32942372-32942577(+)$1	1	33	36	9.0000
(((	chr4:152024046-152024272(+)$1	1	31	34	9.0000
((.	chr2:132241659-132241891(-)$1	1	2	5	9.0000
...	chr6:74227864-74228069(-)$1	1	129	132	9.0000
...	chrX:118603744-118603982(+)$1	1	73	76	9.0000
(((	chr6:32011424-32011682(-)$1	1	4	7	9.0000
)).	chr8:48874574-48874819(+)$1	1	27	30	9.0000
.((	chr2:130947973-130948203(+)$1	1	48	51	9.0000
...	chr4:84406090-84406327(-)$1	1	78	81	9.0000
.((	chrX:118603724-118603944(+)$1	1	18	21	9.0000
(((	chr12:111885229-111885448(+)$1	1	45	48	9.0000
(((	chr1:47124264-47124510(-)$1	1	69	72	9.0000
)))	chr17:27013637-27013892(+)$1	1	45	48	9.0000
.))	chr11:75111703-75111906(+)$1	1	22	25	9.0000
(.(	chr9:19378796-19379003(-)$1	1	4	7	9.0000
((.	chr11:73687821-73688072(-)$1	1	62	65	9.0000
((.	chr9:19378810-19379016(-)$1	1	17	20	9.0000
(((	chr11:77780878-77781164(-)$1	1	5	8	9.0000
(((	chr9:19378783-19378993(-)$1	1	17	20	9.0000
(((	chr6:32942369-32942572(+)$1	1	36	39	9.0000
((.	chr5:149199896-149200204(+)$1	1	88	91	9.0000
..(	chr12:112681130-112681368(-)$1	1	23	26	9.0000
(((	chr9:19378759-19378966(-)$1	1	23	26	9.0000
...	chr9:80923376-80923595(+)$1	1	15	18	9.0000
)((	chr9:19379384-19379593(-)$1	1	125	128	9.0000
)))	chr15:48623653-48623910(+)$1	1	228	231	9.0000
(((	chr6:4115994-4116215(-)$1	1	8	11	9.0000
.))	chr1:151279946-151280197(-)$1	1	105	108	9.0000
)).	chrX:153662613-153662886(+)$1	1	11	14	9.0000
)))	chr1:47130827-47131030(-)$1	1	88	91	9.0000
.((	chr7:2275086-2275300(-)$1	1	28	31	9.0000
)))	chr1:47130830-47131038(-)$1	1	96	99	9.0000
(((	chr17:40642518-40642749(+)$1	1	3	6	9.0000
(((	chr11:75111730-75111939(+)$1	1	9	12	9.0000
...	chr5:179992754-179993007(+)$1	1	33	36	9.0000
)))	chr4:140265321-140265529(+)$1	1	120	123	9.0000
.((	chr11:65402390-65402690(+)$1	1	34	37	9.0000
.((	chr9:95032104-95032318(-)$1	1	30	33	9.0000
(..	chr22:38864098-38864346(+)$1	1	15	18	9.0000
((.	chr17:7127538-7127784(+)$1	1	61	64	9.0000
(((	chr11:86048369-86048676(+)$1	1	0	3	9.0000
(((	chr6:4116015-4116258(-)$1	1	51	54	9.0000
(((	chr22:38864146-38864387(+)$1	1	99	102	9.0000
..(	chr9:19378741-19378949(-)$1	1	6	9	9.0000
.((	chr11:618790-619008(-)$1	1	111	114	9.0000
..(	chr12:112681168-112681377(-)$1	1	32	35	9.0000
..(	chr2:130947941-130948173(+)$1	1	2	5	9.0000
.((	chr9:19378803-19379010(-)$1	1	11	14	9.0000
.(.	chr4:152024028-152024246(+)$1	1	17	20	9.0000
(((	chr1:38464955-38465202(-)$1	1	12	15	9.0000
(((	chr9:95032065-95032304(-)$1	1	16	19	9.0000
(((	chr8:144102632-144102864(+)$1	1	28	31	9.0000
(((	chr17:40646249-40646468(+)$1	1	35	38	9.0000
...	chr6:74227869-74228082(-)$1	1	142	145	9.0000
(((	chr7:2278952-2279192(-)$1	1	1	4	9.0000
...	chr12:56522137-56522375(+)$1	1	166	169	9.0000
...	chr6:74227976-74228204(-)$1	1	19	22	9.0000
(((	chr17:26678587-26678806(-)$1	1	53	56	9.0000
(((	chr8:144102630-144102832(+)$1	1	30	33	9.0000
(.(	chr9:140446425-140446714(+)$1	1	12	15	9.0000
.((	chr11:75111706-75111930(+)$1	1	19	22	9.0000

#PSSM
U : 0.98	u : 0.02	
G : 0.98	g : 0.02	
U : 0.98	u : 0.02	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_UTR_m1_run1.nuc.txt

#NT
GAGGGACGGGGGUG	chr19:41770845-41771099(+)$1	254	89	103	18.6666
GAAGGGAGGGAGGG	chr17:56167544-56167802(+)$1	258	91	105	21.3333
gaggguggggaagg	chr22:50013828-50014094(-)$1	266	9	23	26.3333
gaggguggggaagg	chr22:50013894-50014168(-)$1	274	83	97	26.3333
gaagcaggggaggg	chr12:123463994-123464266(+)$1	272	105	119	23.3333
gugggagggggggg	chr6:34664394-34664666(-)$1	272	92	106	23.6666
GGGAGUGGGGAGGG	chr4:763941-764198(-)$1	257	91	105	22.3333
GGGGGCGGGGAUGC	chr8:144678734-144679005(-)$1	271	45	59	19.6666
GAGGGAGUGGAGGG	chr19:50168058-50168449(-)$1	391	93	107	25.6666
guggggggggaggG	chr2:20550327-20550587(-)$1	260	89	103	25.6666
ggggacggggaggg	chr22:50013564-50013841(-)$1	277	84	98	22.6666
GAGGGCGGGGAGUC	chr3:15901014-15901315(-)$1	301	144	158	21.6666
gaaggaggggaagu	chr1:90493047-90493348(+)$1	301	81	95	20.3333
gaggcugagguggg	chr22:19429491-19429764(-)$1	273	193	207	18.0000

#otherMatches

#Struct PSSM
::::::::::::::	chr6:86352565-86352827(-)$1	262	77	91	29.6666
eeee22ggggggg:	chr19:41770845-41771099(+)$1	254	89	103	18.6666
HHHHHH}CCC}GGG	chr17:56167544-56167802(+)$1	258	91	105	21.3333
::::BB{A{ALLLC	chr22:50013828-50014094(-)$1	266	9	23	26.3333
ddd]dddd55555d	chr22:50013894-50014168(-)$1	274	83	97	26.3333
bb[bb"""ccc[a#	chr12:123463994-123464266(+)$1	272	105	119	23.3333
MMMEEEEEeeeee!	chr6:34664394-34664666(-)$1	272	92	106	23.6666
EEEE{DDDD{BB{D	chr4:763941-764198(-)$1	257	91	105	22.3333
II::ddddnnnnnd	chr8:144678734-144679005(-)$1	271	45	59	19.6666
:DDDDCCCDDDDKK	chr19:50168058-50168449(-)$1	391	93	107	25.6666
{CCCKKDDDD::ff	chr2:20550327-20550587(-)$1	260	89	103	25.6666
EDDDDKKHHHHHHH	chr22:50013564-50013841(-)$1	277	84	98	22.6666
ffffffnnnnnfff	chr3:15901014-15901315(-)$1	301	144	158	21.6666
[a[eeeee"""fff	chr1:90493047-90493348(+)$1	301	81	95	20.3333
ffddddhhhhhhhh	chr22:19429491-19429764(-)$1	273	193	207	18.0000

#DB
..............	chr6:86352565-86352827(-)$1	1	77	91	29.6666
))))..))))))).	chr19:41770845-41771099(+)$1	1	89	103	18.6666
)))))).))).)))	chr17:56167544-56167802(+)$1	1	91	105	21.3333
....((.(.(...(	chr22:50013828-50014094(-)$1	1	9	23	26.3333
))).)))).....)	chr22:50013894-50014168(-)$1	1	83	97	26.3333
((.((...(((.(.	chr12:123463994-123464266(+)$1	1	105	119	23.3333
...((((((((((.	chr6:34664394-34664666(-)$1	1	92	106	23.6666
((((.((((.((.(	chr4:763941-764198(-)$1	1	91	105	22.3333
((..((((.....)	chr8:144678734-144679005(-)$1	1	45	59	19.6666
.)))))))((((..	chr19:50168058-50168449(-)$1	1	93	107	25.6666
.(((..((((..((	chr2:20550327-20550587(-)$1	1	89	103	25.6666
(((((..(((((((	chr22:50013564-50013841(-)$1	1	84	98	22.6666
((((((.....)))	chr3:15901014-15901315(-)$1	1	144	158	21.6666
.(.(((((...(((	chr1:90493047-90493348(+)$1	1	81	95	20.3333
))))))((((((((	chr22:19429491-19429764(-)$1	1	193	207	18.0000

#PSSM
g : 0.53	G : 0.46	
a : 0.39	A : 0.26	u : 0.13	G : 0.13	g : 0.06	
g : 0.46	G : 0.33	a : 0.13	A : 0.06	
g : 0.60	G : 0.33	A : 0.06	
g : 0.39	G : 0.39	c : 0.13	a : 0.06	
a : 0.26	u : 0.20	A : 0.13	C : 0.13	G : 0.06	U : 0.06	g : 0.06	c : 0.06	
g : 0.60	G : 0.26	C : 0.06	A : 0.06	
g : 0.53	G : 0.33	U : 0.06	a : 0.06	
g : 0.60	G : 0.39	
g : 0.60	G : 0.39	
a : 0.46	A : 0.33	G : 0.06	g : 0.06	u : 0.06	
g : 0.39	G : 0.33	a : 0.20	U : 0.06	
g : 0.60	G : 0.26	U : 0.13	
g : 0.46	G : 0.33	C : 0.13	u : 0.06	

#score	345.33333333333337
#seq	15
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_transcript_m2_run2.nuc.txt

#NT
cuu	chr14:102706557-102706760(-)$1	203	137	140	9.0000
cuu	chr5:12918301-12918507(-)$1	206	42	45	9.0000
CUU	chrM:12060-12278(+)$1	218	75	78	9.0000
CUU	chr8:133821721-133821933(+)$1	212	30	33	9.0000
CUU	chr19:1648841-1649054(-)$1	213	176	179	9.0000
cuu	chr2:141612167-141612372(-)$1	205	22	25	9.0000
cuu	chr6:27599178-27599381(+)$1	203	53	56	9.0000
CUU	chr17:19411448-19411681(+)$1	233	14	17	9.0000
cuu	chr1:94313100-94313325(+)$1	225	59	62	9.0000
CUU	chr16:3239592-3239804(+)$1	212	22	25	9.0000
cuu	chr16:3232554-3232758(-)$1	204	81	84	9.0000
cuu	chr19:45981754-45981976(-)$1	222	64	67	9.0000
CUU	chr6:28806136-28806341(-)$1	205	15	18	9.0000
CUU	chr19:1648815-1649041(-)$1	226	163	166	9.0000
CUU	chr6:28806141-28806345(-)$1	204	19	22	9.0000
cuu	chr16:3232537-3232750(-)$1	213	73	76	9.0000
CUU	chr5:139345235-139345446(-)$1	211	45	48	9.0000
cuu	chr16:3241939-3242143(+)$1	204	78	81	9.0000
cuu	chr5:12918285-12918493(-)$1	208	28	31	9.0000
cuu	chr12:124710917-124711144(+)$1	227	30	33	9.0000
cuu	chr1:161858625-161858835(+)$1	210	20	23	9.0000
CUU	chr14:37267475-37267687(-)$1	212	16	19	9.0000
CUU	chr7:139025411-139025632(+)$1	221	115	118	9.0000
CUU	chr10:128256278-128256488(-)$1	210	29	32	9.0000
cuu	chr16:3232532-3232737(-)$1	205	60	63	9.0000
cuu	chr2:141612149-141612359(-)$1	210	9	12	9.0000
cuu	chr16:3241943-3242152(+)$1	209	74	77	9.0000
CUU	chr8:55590993-55591216(+)$1	223	10	13	9.0000
CUU	chr2:11691786-11692007(+)$1	221	15	18	9.0000
cuu	chr6:26988102-26988306(+)$1	204	54	57	9.0000
CUU	chr8:133821733-133821944(+)$1	211	18	21	9.0000
cuu	chr6:27599192-27599399(+)$1	207	39	42	9.0000
cuu	chr13:24308458-24308663(-)$1	205	8	11	9.0000
CUU	chrM:4319-4562(+)$1	243	3	6	9.0000
CUU	chr12:1948172-1948379(-)$1	207	94	97	9.0000
cuu	chr6:27599181-27599392(+)$1	211	50	53	9.0000
cuu	chr16:3241937-3242139(+)$1	202	80	83	9.0000
cuu	chr19:33667912-33668148(+)$1	236	60	63	9.0000
CUU	chr12:99080533-99080744(+)$1	211	82	85	9.0000
CUU	chr1:169076105-169076326(+)$1	221	99	102	9.0000
CUU	chr13:41634780-41634997(-)$1	217	10	13	9.0000
CUU	chr19:9982739-9982950(-)$1	211	50	53	9.0000
CUU	chr5:180618572-180618802(-)$1	230	16	19	9.0000
cuu	chr11:73843151-73843359(-)$1	208	102	105	9.0000
cuu	chr14:21077391-21077595(-)$1	204	58	61	9.0000
cuu	chr1:17199038-17199256(+)$1	218	70	73	9.0000
cuu	chr17:8126037-8126247(-)$1	210	54	57	9.0000
cuu	chr15:89878253-89878463(+)$1	210	81	84	9.0000
CUU	chr17:73029939-73030150(+)$1	211	23	26	9.0000
cuu	chr11:66115568-66115783(+)$1	215	69	72	9.0000
CUU	chr3:45730393-45730606(-)$1	213	30	33	9.0000
cuu	chr11:73843159-73843374(-)$1	215	117	120	9.0000
CUU	chr12:1948154-1948372(-)$1	218	87	90	9.0000
CUU	chr5:180692567-180692776(+)$1	209	78	81	9.0000
CUU	chr11:113000523-113000730(+)$1	207	26	29	9.0000
CUU	chr19:4724562-4724772(-)$1	210	197	200	9.0000
CUU	chr3:45730377-45730589(-)$1	212	13	16	9.0000
CUu	chr13:41634772-41634975(-)$1	203	28	31	9.0000
cuu	chr3:127793875-127794123(-)$1	248	44	47	9.0000
cuu	chr16:3241458-3241680(+)$1	222	75	78	9.0000
CUU	chr7:139025391-139025611(+)$1	220	135	138	9.0000
cUU	chr17:37309902-37310105(-)$1	203	119	122	9.0000
CUU	chr5:180692576-180692792(+)$1	216	69	72	9.0000
CUU	chr15:45492470-45492694(-)$1	224	182	185	9.0000
CUU	chrM:12078-12290(+)$1	212	57	60	9.0000
cuu	chr20:33209934-33210145(-)$1	211	0	3	9.0000
CUU	chr12:99080544-99080748(+)$1	204	71	74	9.0000
CUU	chr1:21049412-21049638(-)$1	226	202	205	9.0000
cuu	chr12:3750108-3750339(-)$1	231	29	32	9.0000
cuu	chr2:141612163-141612367(-)$1	204	17	20	9.0000
CUU	chr1:17199031-17199238(+)$1	207	6	9	9.0000
cUU	chr17:37309887-37310102(-)$1	215	116	119	9.0000
cuu	chr16:3232550-3232754(-)$1	204	77	80	9.0000
cuu	chr17:73031151-73031360(+)$1	209	87	90	9.0000
CUU	chr16:3239569-3239780(+)$1	211	45	48	9.0000
CUU	chr19:1648854-1649094(-)$1	240	216	219	9.0000
CUU	chr16:70812825-70813029(-)$1	204	99	102	9.0000
CUU	chr7:158695497-158695777(+)$1	280	13	16	9.0000
CUU	chr15:79152863-79153074(+)$1	211	3	6	9.0000
cuu	chr17:73031177-73031391(+)$1	214	61	64	9.0000
CUU	chr5:177019272-177019481(+)$1	209	59	62	9.0000
cuu	chr14:21077395-21077622(-)$1	227	85	88	9.0000
CUU	chr17:19411437-19411648(+)$1	211	25	28	9.0000
CUU	chr6:72055830-72056039(-)$1	209	111	114	9.0000
CUU	chr2:11691769-11691986(+)$1	217	15	18	9.0000
CUU	chr16:87417513-87417726(-)$1	213	127	130	9.0000
CUU	chr17:73029950-73030193(+)$1	243	12	15	9.0000
CUU	chr5:177019281-177019496(+)$1	215	50	53	9.0000
cuu	chr16:3207310-3207517(-)$1	207	72	75	9.0000
cuu	chr16:3241952-3242176(+)$1	224	65	68	9.0000
CUU	chrM:4203-4430(+)$1	227	4	7	9.0000
cUU	chr17:37309870-37310087(-)$1	217	101	104	9.0000
CUU	chr11:113000508-113000714(+)$1	206	41	44	9.0000
cuu	chr7:149286054-149286300(-)$1	246	90	93	9.0000
CUU	chr1:17188367-17188600(+)$1	233	12	15	9.0000
CUU	chr10:128256267-128256471(-)$1	204	12	15	9.0000
cuu	chr1:94313096-94313300(+)$1	204	63	66	9.0000
cuu	chr14:58706495-58706737(-)$1	242	85	88	9.0000
CUU	chr6:6320413-6320638(-)$1	225	8	11	9.0000

#otherMatches

#Struct PSSM
ppp	chr2:241976440-241976650(-)$1	210	158	161	9.0000
hhh	chr14:102706557-102706760(-)$1	203	137	140	9.0000
eee	chr5:12918301-12918507(-)$1	206	42	45	9.0000
:::	chrM:12060-12278(+)$1	218	75	78	9.0000
dEE	chr8:133821721-133821933(+)$1	212	30	33	9.0000
==:	chr19:1648841-1649054(-)$1	213	176	179	9.0000
eee	chr2:141612167-141612372(-)$1	205	22	25	9.0000
d[e	chr6:27599178-27599381(+)$1	203	53	56	9.0000
h!!	chr17:19411448-19411681(+)$1	233	14	17	9.0000
d$$	chr1:94313100-94313325(+)$1	225	59	62	9.0000
ggg	chr16:3239592-3239804(+)$1	212	22	25	9.0000
gpp	chr16:3232554-3232758(-)$1	204	81	84	9.0000
ccc	chr19:45981754-45981976(-)$1	222	64	67	9.0000
:dd	chr6:28806136-28806341(-)$1	205	15	18	9.0000
==:	chr19:1648815-1649041(-)$1	226	163	166	9.0000
:dd	chr6:28806141-28806345(-)$1	204	19	22	9.0000
gpp	chr16:3232537-3232750(-)$1	213	73	76	9.0000
:::	chr5:139345235-139345446(-)$1	211	45	48	9.0000
fpp	chr16:3241939-3242143(+)$1	204	78	81	9.0000
eee	chr5:12918285-12918493(-)$1	208	28	31	9.0000
EEE	chr12:124710917-124711144(+)$1	227	30	33	9.0000
===	chr1:161858625-161858835(+)$1	210	20	23	9.0000
qqq	chr14:37267475-37267687(-)$1	212	16	19	9.0000
a]g	chr7:139025411-139025632(+)$1	221	115	118	9.0000
:::	chr10:128256278-128256488(-)$1	210	29	32	9.0000
{HH	chr16:3232532-3232737(-)$1	205	60	63	9.0000
eee	chr2:141612149-141612359(-)$1	210	9	12	9.0000
fpp	chr16:3241943-3242152(+)$1	209	74	77	9.0000
QQQ	chr8:55590993-55591216(+)$1	223	10	13	9.0000
:::	chr2:11691786-11692007(+)$1	221	15	18	9.0000
ddq	chr6:26988102-26988306(+)$1	204	54	57	9.0000
:EE	chr8:133821733-133821944(+)$1	211	18	21	9.0000
d[e	chr6:27599192-27599399(+)$1	207	39	42	9.0000
:::	chr13:24308458-24308663(-)$1	205	8	11	9.0000
HHH	chrM:4319-4562(+)$1	243	3	6	9.0000
g""	chr12:1948172-1948379(-)$1	207	94	97	9.0000
d[e	chr6:27599181-27599392(+)$1	211	50	53	9.0000
fpp	chr16:3241937-3242139(+)$1	202	80	83	9.0000
een	chr19:33667912-33668148(+)$1	236	60	63	9.0000
ddp	chr12:99080533-99080744(+)$1	211	82	85	9.0000
cc:	chr1:169076105-169076326(+)$1	221	99	102	9.0000
mmm	chr13:41634780-41634997(-)$1	217	10	13	9.0000
nnb	chr19:9982739-9982950(-)$1	211	50	53	9.0000
dd]	chr5:180618572-180618802(-)$1	230	16	19	9.0000
bbe	chr11:73843151-73843359(-)$1	208	102	105	9.0000
gpp	chr14:21077391-21077595(-)$1	204	58	61	9.0000
dd3	chr1:17199038-17199256(+)$1	218	70	73	9.0000
gpp	chr17:8126037-8126247(-)$1	210	54	57	9.0000
amm	chr15:89878253-89878463(+)$1	210	81	84	9.0000
CCC	chr17:73029939-73030150(+)$1	211	23	26	9.0000
ccc	chr11:66115568-66115783(+)$1	215	69	72	9.0000
CLL	chr3:45730393-45730606(-)$1	213	30	33	9.0000
bbe	chr11:73843159-73843374(-)$1	215	117	120	9.0000
iif	chr12:1948154-1948372(-)$1	218	87	90	9.0000
e33	chr5:180692567-180692776(+)$1	209	78	81	9.0000
uhh	chr11:113000523-113000730(+)$1	207	26	29	9.0000
ggg	chr19:4724562-4724772(-)$1	210	197	200	9.0000
fff	chr3:45730377-45730589(-)$1	212	13	16	9.0000
DDD	chr13:41634772-41634975(-)$1	203	28	31	9.0000
dll	chr3:127793875-127794123(-)$1	248	44	47	9.0000
ffp	chr16:3241458-3241680(+)$1	222	75	78	9.0000
cmm	chr7:139025391-139025611(+)$1	220	135	138	9.0000
JJe	chr17:37309902-37310105(-)$1	203	119	122	9.0000
e33	chr5:180692576-180692792(+)$1	216	69	72	9.0000
iii	chr15:45492470-45492694(-)$1	224	182	185	9.0000
EE{	chrM:12078-12290(+)$1	212	57	60	9.0000
:::	chr20:33209934-33210145(-)$1	211	0	3	9.0000
ddp	chr12:99080544-99080748(+)$1	204	71	74	9.0000
rrr	chr1:21049412-21049638(-)$1	226	202	205	9.0000
%%%	chr12:3750108-3750339(-)$1	231	29	32	9.0000
eee	chr2:141612163-141612367(-)$1	204	17	20	9.0000
FFF	chr1:17199031-17199238(+)$1	207	6	9	9.0000
JJZ	chr17:37309887-37310102(-)$1	215	116	119	9.0000
gpp	chr16:3232550-3232754(-)$1	204	77	80	9.0000
GG{	chr17:73031151-73031360(+)$1	209	87	90	9.0000
ggg	chr16:3239569-3239780(+)$1	211	45	48	9.0000
==6	chr19:1648854-1649094(-)$1	240	216	219	9.0000
cc:	chr16:70812825-70813029(-)$1	204	99	102	9.0000
dd$	chr7:158695497-158695777(+)$1	280	13	16	9.0000
ee!	chr15:79152863-79153074(+)$1	211	3	6	9.0000
FF{	chr17:73031177-73031391(+)$1	214	61	64	9.0000
eee	chr5:177019272-177019481(+)$1	209	59	62	9.0000
gpp	chr14:21077395-21077622(-)$1	227	85	88	9.0000
h!!	chr17:19411437-19411648(+)$1	211	25	28	9.0000
ddd	chr6:72055830-72056039(-)$1	209	111	114	9.0000
'''	chr2:11691769-11691986(+)$1	217	15	18	9.0000
HHH	chr16:87417513-87417726(-)$1	213	127	130	9.0000
DDD	chr17:73029950-73030193(+)$1	243	12	15	9.0000
eee	chr5:177019281-177019496(+)$1	215	50	53	9.0000
ffp	chr16:3207310-3207517(-)$1	207	72	75	9.0000
fpp	chr16:3241952-3242176(+)$1	224	65	68	9.0000
:::	chrM:4203-4430(+)$1	227	4	7	9.0000
JJE	chr17:37309870-37310087(-)$1	217	101	104	9.0000
LLD	chr11:113000508-113000714(+)$1	206	41	44	9.0000
eee	chr7:149286054-149286300(-)$1	246	90	93	9.0000
:::	chr1:17188367-17188600(+)$1	233	12	15	9.0000
:::	chr10:128256267-128256471(-)$1	204	12	15	9.0000
d$$	chr1:94313096-94313300(+)$1	204	63	66	9.0000
c$$	chr14:58706495-58706737(-)$1	242	85	88	9.0000
DDD	chr6:6320413-6320638(-)$1	225	8	11	9.0000

#DB
...	chr2:241976440-241976650(-)$1	1	158	161	9.0000
(((	chr14:102706557-102706760(-)$1	1	137	140	9.0000
(((	chr5:12918301-12918507(-)$1	1	42	45	9.0000
...	chrM:12060-12278(+)$1	1	75	78	9.0000
)((	chr8:133821721-133821933(+)$1	1	30	33	9.0000
)).	chr19:1648841-1649054(-)$1	1	176	179	9.0000
(((	chr2:141612167-141612372(-)$1	1	22	25	9.0000
(.(	chr6:27599178-27599381(+)$1	1	53	56	9.0000
(..	chr17:19411448-19411681(+)$1	1	14	17	9.0000
(..	chr1:94313100-94313325(+)$1	1	59	62	9.0000
(((	chr16:3239592-3239804(+)$1	1	22	25	9.0000
(..	chr16:3232554-3232758(-)$1	1	81	84	9.0000
)))	chr19:45981754-45981976(-)$1	1	64	67	9.0000
.((	chr6:28806136-28806341(-)$1	1	15	18	9.0000
)).	chr19:1648815-1649041(-)$1	1	163	166	9.0000
.((	chr6:28806141-28806345(-)$1	1	19	22	9.0000
(..	chr16:3232537-3232750(-)$1	1	73	76	9.0000
...	chr5:139345235-139345446(-)$1	1	45	48	9.0000
(..	chr16:3241939-3242143(+)$1	1	78	81	9.0000
(((	chr5:12918285-12918493(-)$1	1	28	31	9.0000
(((	chr12:124710917-124711144(+)$1	1	30	33	9.0000
(((	chr1:161858625-161858835(+)$1	1	20	23	9.0000
...	chr14:37267475-37267687(-)$1	1	16	19	9.0000
).)	chr7:139025411-139025632(+)$1	1	115	118	9.0000
...	chr10:128256278-128256488(-)$1	1	29	32	9.0000
.((	chr16:3232532-3232737(-)$1	1	60	63	9.0000
(((	chr2:141612149-141612359(-)$1	1	9	12	9.0000
(..	chr16:3241943-3242152(+)$1	1	74	77	9.0000
...	chr8:55590993-55591216(+)$1	1	10	13	9.0000
...	chr2:11691786-11692007(+)$1	1	15	18	9.0000
((.	chr6:26988102-26988306(+)$1	1	54	57	9.0000
.((	chr8:133821733-133821944(+)$1	1	18	21	9.0000
(.(	chr6:27599192-27599399(+)$1	1	39	42	9.0000
...	chr13:24308458-24308663(-)$1	1	8	11	9.0000
(((	chrM:4319-4562(+)$1	1	3	6	9.0000
(..	chr12:1948172-1948379(-)$1	1	94	97	9.0000
(.(	chr6:27599181-27599392(+)$1	1	50	53	9.0000
(..	chr16:3241937-3242139(+)$1	1	80	83	9.0000
((.	chr19:33667912-33668148(+)$1	1	60	63	9.0000
((.	chr12:99080533-99080744(+)$1	1	82	85	9.0000
)).	chr1:169076105-169076326(+)$1	1	99	102	9.0000
...	chr13:41634780-41634997(-)$1	1	10	13	9.0000
..)	chr19:9982739-9982950(-)$1	1	50	53	9.0000
)).	chr5:180618572-180618802(-)$1	1	16	19	9.0000
)))	chr11:73843151-73843359(-)$1	1	102	105	9.0000
(..	chr14:21077391-21077595(-)$1	1	58	61	9.0000
)).	chr1:17199038-17199256(+)$1	1	70	73	9.0000
(..	chr17:8126037-8126247(-)$1	1	54	57	9.0000
(..	chr15:89878253-89878463(+)$1	1	81	84	9.0000
(((	chr17:73029939-73030150(+)$1	1	23	26	9.0000
)))	chr11:66115568-66115783(+)$1	1	69	72	9.0000
(..	chr3:45730393-45730606(-)$1	1	30	33	9.0000
)))	chr11:73843159-73843374(-)$1	1	117	120	9.0000
)))	chr12:1948154-1948372(-)$1	1	87	90	9.0000
)..	chr5:180692567-180692776(+)$1	1	78	81	9.0000
.))	chr11:113000523-113000730(+)$1	1	26	29	9.0000
)))	chr19:4724562-4724772(-)$1	1	197	200	9.0000
(((	chr3:45730377-45730589(-)$1	1	13	16	9.0000
(((	chr13:41634772-41634975(-)$1	1	28	31	9.0000
(..	chr3:127793875-127794123(-)$1	1	44	47	9.0000
((.	chr16:3241458-3241680(+)$1	1	75	78	9.0000
(..	chr7:139025391-139025611(+)$1	1	135	138	9.0000
))(	chr17:37309902-37310105(-)$1	1	119	122	9.0000
)..	chr5:180692576-180692792(+)$1	1	69	72	9.0000
)))	chr15:45492470-45492694(-)$1	1	182	185	9.0000
((.	chrM:12078-12290(+)$1	1	57	60	9.0000
...	chr20:33209934-33210145(-)$1	1	0	3	9.0000
((.	chr12:99080544-99080748(+)$1	1	71	74	9.0000
...	chr1:21049412-21049638(-)$1	1	202	205	9.0000
...	chr12:3750108-3750339(-)$1	1	29	32	9.0000
(((	chr2:141612163-141612367(-)$1	1	17	20	9.0000
(((	chr1:17199031-17199238(+)$1	1	6	9	9.0000
)).	chr17:37309887-37310102(-)$1	1	116	119	9.0000
(..	chr16:3232550-3232754(-)$1	1	77	80	9.0000
((.	chr17:73031151-73031360(+)$1	1	87	90	9.0000
(((	chr16:3239569-3239780(+)$1	1	45	48	9.0000
)).	chr19:1648854-1649094(-)$1	1	216	219	9.0000
)).	chr16:70812825-70813029(-)$1	1	99	102	9.0000
((.	chr7:158695497-158695777(+)$1	1	13	16	9.0000
((.	chr15:79152863-79153074(+)$1	1	3	6	9.0000
((.	chr17:73031177-73031391(+)$1	1	61	64	9.0000
(((	chr5:177019272-177019481(+)$1	1	59	62	9.0000
(..	chr14:21077395-21077622(-)$1	1	85	88	9.0000
(..	chr17:19411437-19411648(+)$1	1	25	28	9.0000
)))	chr6:72055830-72056039(-)$1	1	111	114	9.0000
...	chr2:11691769-11691986(+)$1	1	15	18	9.0000
)))	chr16:87417513-87417726(-)$1	1	127	130	9.0000
(((	chr17:73029950-73030193(+)$1	1	12	15	9.0000
(((	chr5:177019281-177019496(+)$1	1	50	53	9.0000
((.	chr16:3207310-3207517(-)$1	1	72	75	9.0000
(..	chr16:3241952-3242176(+)$1	1	65	68	9.0000
...	chrM:4203-4430(+)$1	1	4	7	9.0000
)))	chr17:37309870-37310087(-)$1	1	101	104	9.0000
..(	chr11:113000508-113000714(+)$1	1	41	44	9.0000
(((	chr7:149286054-149286300(-)$1	1	90	93	9.0000
...	chr1:17188367-17188600(+)$1	1	12	15	9.0000
...	chr10:128256267-128256471(-)$1	1	12	15	9.0000
(..	chr1:94313096-94313300(+)$1	1	63	66	9.0000
(..	chr14:58706495-58706737(-)$1	1	85	88	9.0000
(((	chr6:6320413-6320638(-)$1	1	8	11	9.0000

#PSSM
C : 0.55	c : 0.45	
U : 0.58	u : 0.42	
U : 0.57	u : 0.43	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_transcript_m2_run1.nuc.txt

#NT
GGGAGGGGGG	chr17:45726473-45726754(-)$1	281	49	59	13.2075
GGGUGGCGGG	chr19:56611775-56612064(-)$1	289	49	59	19.2452
UGGUGGGAGG	chr19:49606290-49606570(+)$1	280	45	55	14.0566
GGGUGGCGGG	chr3:9438377-9438672(-)$1	295	225	235	19.2452
agguggcagg	chr1:143456852-143457093(-)$1	241	10	20	17.4528
GGCGGGCAGG	chr9:139560575-139560861(+)$1	286	91	101	15.1886
gggugggugg	chr1:155947788-155948052(-)$1	264	39	49	15.2830
GCGUGGGAGG	chr9:140683061-140683355(+)$1	294	261	271	13.3018
ggguGCCAGC	chr17:17727224-17727518(-)$1	294	159	169	12.9245
GGGUGGGUGG	chr20:45948455-45948697(-)$1	242	87	97	15.2830
GGGGGGCGGG	chr1:78148553-78148810(-)$1	257	85	95	16.4150
GGGUGGCAUG	chr22:50873238-50873558(+)$1	320	162	172	16.0377
GGGUUGCCGG	chr12:123868768-123869026(+)$1	258	41	51	14.2452
CGGGGGCAGG	chr19:2451908-2452196(-)$1	288	132	142	14.3396
GGCUGGCAGG	chr12:132380850-132381124(+)$1	274	245	255	18.0188
CGGUGGCAGG	chr19:5935626-5935906(-)$1	280	213	223	17.1698
GGCUGGUGGG	chr8:145681780-145682026(-)$1	246	81	91	12.8301
GAGGGGCAGG	chr20:62296600-62296854(+)$1	254	137	147	13.3962
CGGUGGCCGG	chr16:88569114-88569381(+)$1	267	185	195	14.9999
GGGUGGAAGG	chr7:100171543-100171849(-)$1	306	130	140	17.3584
AGGUGGCAGG	chr19:1878602-1878827(-)$1	225	44	54	17.4528
GGGCGCCAGG	chr9:140092924-140093179(-)$1	255	156	166	14.1509
GGGUGGCAGG	chr8:145684563-145684806(-)$1	243	98	108	20.8490
GGGUCGCGGG	chr9:100747617-100747886(+)$1	269	72	82	14.8113
GGGAggccgg	chr8:11665787-11666090(+)$1	303	79	89	15.6603
GGUUGCCAGG	chr16:89025248-89025484(-)$1	236	102	112	14.0566
GGGAGCCGGG	chr22:49983629-49983865(-)$1	236	69	79	12.6415
AGGUGGGAGG	chr7:150796628-150796868(+)$1	240	53	63	14.4339
GGGUCGCCGG	chr19:11072128-11072388(+)$1	260	3	13	14.2452
GGGUGGGCGG	chr10:126748169-126748406(-)$1	237	52	62	15.6603
GGCGGGCAGG	chr1:228270983-228271251(+)$1	268	118	128	15.1886
GGGUGGCAGG	chr11:2414903-2415164(+)$1	261	73	83	20.8490
GGGUGGACGG	chr7:1492119-1492404(-)$1	285	152	162	15.1886
GGUUGGGAGG	chr11:66384617-66384903(+)$1	286	0	10	14.6226
GGGAGCCGGG	chr20:56964764-56965002(+)$1	238	12	22	12.6415
AGGUGUCAGG	chr22:23562396-23562699(+)$1	303	150	160	13.3018
GGGUGGUGGG	chr10:126837744-126838050(-)$1	306	126	136	15.6603
gguugccagg	chr17:80876352-80876609(+)$1	257	102	112	14.0566
AGGGGGCAGG	chr2:10310506-10310756(+)$1	250	82	92	14.6226
gggcggcggg	chr4:18022466-18022741(-)$1	275	91	101	16.1320
gggcggcggg	chr1:245026349-245026633(-)$1	284	17	27	16.1320
GGUUUGCAGG	chr20:362372-362623(+)$1	251	105	115	13.2075
GGCUGGCCGG	chr2:236452124-236452363(+)$1	239	81	91	15.8490
GGGUGGCGGC	chr1:1242491-1242729(-)$1	238	63	73	14.9056
UGGUGGCAGA	chr11:63884767-63885020(-)$1	253	71	81	12.5471
GGCUGGCGGG	chr8:103424133-103424401(-)$1	268	8	18	16.4150
GGGGGCCAGG	chr19:2333941-2334209(+)$1	268	245	255	14.4339
GGCUGGCAGC	chr19:16738089-16738368(-)$1	279	172	182	13.6792
GGGAGGCAGG	chr16:85650932-85651179(+)$1	247	103	113	17.8301
GCCUGGCAGG	chr19:3098664-3098905(+)$1	241	78	88	13.4905
AGUUGGCAGG	chr22:50174146-50174422(-)$1	276	38	48	14.2452
GGCUGGCUGG	chr16:81585782-81586066(+)$1	284	89	99	15.4716

#otherMatches

#Struct PSSM
pccc::::::	chr5:149110537-149110788(+)$1	251	93	103	14.2452
bb"""a[fff	chr17:45726473-45726754(-)$1	281	49	59	13.2075
FF{CCC{DDD	chr19:56611775-56612064(-)$1	289	49	59	19.2452
ffff]a]ddd	chr19:49606290-49606570(+)$1	280	45	55	14.0566
[a[acccggg	chr3:9438377-9438672(-)$1	295	225	235	19.2452
FFF::eeeee	chr1:143456852-143457093(-)$1	241	10	20	17.4528
eeeeebb[bb	chr9:139560575-139560861(+)$1	286	91	101	15.1886
tttttttttt	chr1:155947788-155948052(-)$1	264	39	49	15.2830
eee[bb[ccc	chr9:140683061-140683355(+)$1	294	261	271	13.3018
CCIIIIIIII	chr17:17727224-17727518(-)$1	294	159	169	12.9245
::eeeee[a[	chr20:45948455-45948697(-)$1	242	87	97	15.2830
:::ggggggg	chr1:78148553-78148810(-)$1	257	85	95	16.4150
iiiiiiii]b	chr22:50873238-50873558(+)$1	320	162	172	16.0377
GGGKKBB{FF	chr12:123868768-123869026(+)$1	258	41	51	14.2452
GGEEEEEKKA	chr19:2451908-2452196(-)$1	288	132	142	14.3396
bb]a]dddde	chr12:132380850-132381124(+)$1	274	245	255	18.0188
ccc[ffffff	chr19:5935626-5935906(-)$1	280	213	223	17.1698
]a22bb]iii	chr8:145681780-145682026(-)$1	246	81	91	12.8301
&&&hhhhhhh	chr20:62296600-62296854(+)$1	254	137	147	13.3962
77ffffffcc	chr16:88569114-88569381(+)$1	267	185	195	14.9999
IIIIIIYYBB	chr7:100171543-100171849(-)$1	306	130	140	17.3584
ssssffffff	chr19:1878602-1878827(-)$1	225	44	54	17.4528
]bb]gggggg	chr9:140092924-140093179(-)$1	255	156	166	14.1509
ggggggg]a]	chr8:145684563-145684806(-)$1	243	98	108	20.8490
======[ddd	chr9:100747617-100747886(+)$1	269	72	82	14.8113
FLLLCCC{JJ	chr8:11665787-11666090(+)$1	303	79	89	15.6603
fcccGGGGGG	chr16:89025248-89025484(-)$1	236	102	112	14.0566
aeeeee:DDD	chr22:49983629-49983865(-)$1	236	69	79	12.6415
FFFFFF{FFF	chr7:150796628-150796868(+)$1	240	53	63	14.4339
GGGGGGRRRR	chr19:11072128-11072388(+)$1	260	3	13	14.2452
{DDDDKKBB{	chr10:126748169-126748406(-)$1	237	52	62	15.6603
fffeeeee[a	chr1:228270983-228271251(+)$1	268	118	128	15.1886
hhhhhhhhee	chr11:2414903-2415164(+)$1	261	73	83	20.8490
DDD{BB{CCC	chr7:1492119-1492404(-)$1	285	152	162	15.1886
::HHHHHHHH	chr11:66384617-66384903(+)$1	286	0	10	14.6226
eeeee!!eee	chr20:56964764-56965002(+)$1	238	12	22	12.6415
eeeee[dddd	chr22:23562396-23562699(+)$1	303	150	160	13.3018
ccc:ccc[bb	chr10:126837744-126838050(-)$1	306	126	136	15.6603
ddd:bbeeee	chr17:80876352-80876609(+)$1	257	102	112	14.0566
e]hhhhhhhh	chr2:10310506-10310756(+)$1	250	82	92	14.6226
ffffff[a[g	chr4:18022466-18022741(-)$1	275	91	101	16.1320
[ccc!!dddd	chr1:245026349-245026633(-)$1	284	17	27	16.1320
==========	chr20:362372-362623(+)$1	251	105	115	13.2075
{DDDDhhhhh	chr2:236452124-236452363(+)$1	239	81	91	15.8490
EEEEE{A{FF	chr1:1242491-1242729(-)$1	238	63	73	14.9056
JJJ:::::ff	chr11:63884767-63885020(-)$1	253	71	81	12.5471
GGGGGGG:::	chr8:103424133-103424401(-)$1	268	8	18	16.4150
eeedddd:EE	chr19:2333941-2334209(+)$1	268	245	255	14.4339
[a!!a[cccp	chr19:16738089-16738368(-)$1	279	172	182	13.6792
ba]bbJJJJJ	chr16:85650932-85651179(+)$1	247	103	113	17.8301
LFFFFFF{DD	chr19:3098664-3098905(+)$1	241	78	88	13.4905
HHHHH{EEEE	chr22:50174146-50174422(-)$1	276	38	48	14.2452
GGGGGLLLGG	chr16:81585782-81586066(+)$1	284	89	99	15.4716

#DB
.)))......	chr5:149110537-149110788(+)$1	1	93	103	14.2452
((...(.(((	chr17:45726473-45726754(-)$1	1	49	59	13.2075
((.(((.(((	chr19:56611775-56612064(-)$1	1	49	59	19.2452
)))).).)))	chr19:49606290-49606570(+)$1	1	45	55	14.0566
.(.(((((((	chr3:9438377-9438672(-)$1	1	225	235	19.2452
(((..(((((	chr1:143456852-143457093(-)$1	1	10	20	17.4528
(((((((.((	chr9:139560575-139560861(+)$1	1	91	101	15.1886
..........	chr1:155947788-155948052(-)$1	1	39	49	15.2830
(((.((.(((	chr9:140683061-140683355(+)$1	1	261	271	13.3018
))((((((((	chr17:17727224-17727518(-)$1	1	159	169	12.9245
..(((((.(.	chr20:45948455-45948697(-)$1	1	87	97	15.2830
...(((((((	chr1:78148553-78148810(-)$1	1	85	95	16.4150
)))))))).)	chr22:50873238-50873558(+)$1	1	162	172	16.0377
(((..((.((	chr12:123868768-123869026(+)$1	1	41	51	14.2452
(((((((..(	chr19:2451908-2452196(-)$1	1	132	142	14.3396
)).).)))))	chr12:132380850-132381124(+)$1	1	245	255	18.0188
(((.((((((	chr19:5935626-5935906(-)$1	1	213	223	17.1698
.)..)).)))	chr8:145681780-145682026(-)$1	1	81	91	12.8301
...(((((((	chr20:62296600-62296854(+)$1	1	137	147	13.3962
..))))))((	chr16:88569114-88569381(+)$1	1	185	195	14.9999
))))))..))	chr7:100171543-100171849(-)$1	1	130	140	17.3584
....))))))	chr19:1878602-1878827(-)$1	1	44	54	17.4528
.)).))))))	chr9:140092924-140093179(-)$1	1	156	166	14.1509
))))))).).	chr8:145684563-145684806(-)$1	1	98	108	20.8490
((((((.(((	chr9:100747617-100747886(+)$1	1	72	82	14.8113
(...(((.((	chr8:11665787-11666090(+)$1	1	79	89	15.6603
))))))))))	chr16:89025248-89025484(-)$1	1	102	112	14.0566
)))))).(((	chr22:49983629-49983865(-)$1	1	69	79	12.6415
((((((.(((	chr7:150796628-150796868(+)$1	1	53	63	14.4339
((((((....	chr19:11072128-11072388(+)$1	1	3	13	14.2452
.((((..((.	chr10:126748169-126748406(-)$1	1	52	62	15.6603
)))(((((.(	chr1:228270983-228271251(+)$1	1	118	128	15.1886
))))))))((	chr11:2414903-2415164(+)$1	1	73	83	20.8490
(((.((.(((	chr7:1492119-1492404(-)$1	1	152	162	15.1886
..((((((((	chr11:66384617-66384903(+)$1	1	0	10	14.6226
(((((..(((	chr20:56964764-56965002(+)$1	1	12	22	12.6415
(((((.((((	chr22:23562396-23562699(+)$1	1	150	160	13.3018
))).(((.((	chr10:126837744-126838050(-)$1	1	126	136	15.6603
))).((((((	chr17:80876352-80876609(+)$1	1	102	112	14.0566
).))))))))	chr2:10310506-10310756(+)$1	1	82	92	14.6226
((((((.(.(	chr4:18022466-18022741(-)$1	1	91	101	16.1320
.(((..((((	chr1:245026349-245026633(-)$1	1	17	27	16.1320
((((((((((	chr20:362372-362623(+)$1	1	105	115	13.2075
.(((((((((	chr2:236452124-236452363(+)$1	1	81	91	15.8490
(((((.(.((	chr1:1242491-1242729(-)$1	1	63	73	14.9056
(((.....((	chr11:63884767-63885020(-)$1	1	71	81	12.5471
(((((((...	chr8:103424133-103424401(-)$1	1	8	18	16.4150
))))))).))	chr19:2333941-2334209(+)$1	1	245	255	14.4339
.(..(.(((.	chr19:16738089-16738368(-)$1	1	172	182	13.6792
)).)))))))	chr16:85650932-85651179(+)$1	1	103	113	17.8301
.((((((.((	chr19:3098664-3098905(+)$1	1	78	88	13.4905
(((((.((((	chr22:50174146-50174422(-)$1	1	38	48	14.2452
(((((...((	chr16:81585782-81586066(+)$1	1	89	99	15.4716

#PSSM
G : 0.69	g : 0.09	A : 0.09	C : 0.05	U : 0.03	a : 0.01	
G : 0.83	g : 0.11	C : 0.03	A : 0.01	
G : 0.64	C : 0.16	g : 0.09	U : 0.07	u : 0.01	
U : 0.62	G : 0.13	A : 0.09	u : 0.07	C : 0.03	c : 0.03	
G : 0.81	g : 0.11	U : 0.03	C : 0.03	
G : 0.75	C : 0.11	g : 0.09	U : 0.01	c : 0.01	
C : 0.66	G : 0.13	c : 0.09	A : 0.05	U : 0.03	g : 0.01	
A : 0.52	G : 0.20	C : 0.11	a : 0.03	U : 0.03	g : 0.03	u : 0.01	c : 0.01	
G : 0.86	g : 0.11	U : 0.01	
G : 0.81	g : 0.11	C : 0.05	A : 0.01	

#score	808.6792452830185
#seq	53
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_UTR_m3_run1.nuc.txt

#NT
uuuaa	chr11:85989474-85989791(+)$1	317	282	287	14.9999
UUUAA	chr1:78414039-78414258(-)$1	219	123	128	14.9999
UUUAA	chr17:25635480-25635692(+)$1	212	66	71	14.9999
UUUAA	chr18:67994454-67994734(+)$1	280	63	68	14.9999
UUUAA	chr1:90471857-90472122(+)$1	265	21	26	14.9999
UUUAA	chr12:69663718-69663979(+)$1	261	107	112	14.9999
UUUAA	chr2:8823018-8823269(+)$1	251	220	225	14.9999
UUUAA	chr5:139496008-139496273(+)$1	265	213	218	14.9999
UUUAA	chr12:53848223-53848559(+)$1	336	180	185	14.9999
UUUAA	chr1:29486481-29486705(-)$1	224	40	45	14.9999
uuuaa	chr12:11090043-11090327(-)$1	284	193	198	14.9999
UUUAA	chr15:35271318-35271545(-)$1	227	215	220	14.9999
UUUAA	chr15:49281316-49281612(-)$1	296	60	65	14.9999
UUUAA	chr7:17383624-17383916(+)$1	292	99	104	14.9999
UUUAA	chr3:156869387-156869660(-)$1	273	167	172	14.9999
uuuaa	chr2:170554269-170554551(+)$1	282	26	31	14.9999
UUUAA	chr17:2586107-2586381(+)$1	274	16	21	14.9999
UUUAA	chr14:39651983-39652243(+)$1	260	28	33	14.9999
UUUAA	chr21:34931186-34931441(+)$1	255	193	198	14.9999
UUUAA	chr14:32628630-32628897(+)$1	267	96	101	14.9999
UUUAA	chr3:132297896-132298163(-)$1	267	166	171	14.9999
UUUAA	chr17:74731894-74732152(-)$1	258	188	193	14.9999
UUUAA	chr11:85374207-85374444(-)$1	237	55	60	14.9999
uuuaa	chr8:94742345-94742624(-)$1	279	238	243	14.9999
UUUAA	chr13:96251562-96251942(-)$1	380	14	19	14.9999
UUUAA	chr6:17615406-17615680(-)$1	274	175	180	14.9999
UUUAA	chr18:60245468-60245837(+)$1	369	167	172	14.9999
UUUAA	chr17:38292777-38293092(+)$1	315	66	71	14.9999
uuuaa	chr12:105550287-105550543(+)$1	256	0	5	14.9999
UUUAA	chr6:47200271-47200526(-)$1	255	79	84	14.9999
uuuaa	chr9:91947561-91947814(+)$1	253	215	220	14.9999
UUUAA	chr21:40668284-40668547(-)$1	263	251	256	14.9999
UUUAA	chrX:128580637-128580876(-)$1	239	91	96	14.9999
UUUAA	chr17:48939551-48939859(-)$1	308	95	100	14.9999
UUUAA	chr7:26231279-26231552(-)$1	273	10	15	14.9999
UUUAA	chr13:79894055-79894381(-)$1	326	3	8	14.9999
uuuaa	chr4:68376610-68376964(-)$1	354	127	132	14.9999
UUUAA	chr4:433762-434080(-)$1	318	238	243	14.9999
UUUAA	chr3:169888898-169889231(-)$1	333	100	105	14.9999
UUUAA	chr12:22838082-22838349(+)$1	267	53	58	14.9999
UUUAA	chr20:60714243-60714565(-)$1	322	221	226	14.9999
UUUAA	chr17:8371222-8371490(+)$1	268	221	226	14.9999
UUUAA	chr5:95223105-95223367(-)$1	262	46	51	14.9999
UUUAA	chr3:140682287-140682625(+)$1	338	54	59	14.9999
uuuaa	chr3:185207869-185208161(-)$1	292	95	100	14.9999
UUUAA	chr17:56082435-56082652(-)$1	217	69	74	14.9999
UUUAA	chr3:27417054-27417289(-)$1	235	46	51	14.9999
UUUAA	chr6:163986030-163986297(+)$1	267	93	98	14.9999
UUUAA	chr3:123671298-123671654(-)$1	356	35	40	14.9999
uuuaa	chr10:121340059-121340282(-)$1	223	65	70	14.9999
UUUAA	chr10:75203882-75204171(-)$1	289	4	9	14.9999
UUUAA	chr2:8887685-8887958(-)$1	273	56	61	14.9999
UUUAA	chr3:140684570-140684803(+)$1	233	0	5	14.9999
UUUAA	chr3:27414907-27415207(-)$1	300	83	88	14.9999
UUUAA	chrX:56592978-56593323(+)$1	345	55	60	14.9999
UUUAA	chr17:25635439-25635680(+)$1	241	107	112	14.9999
UUUAA	chr5:112930754-112931040(+)$1	286	75	80	14.9999
UUUAA	chr13:32999258-32999578(-)$1	320	264	269	14.9999
uuuaa	chr2:61237065-61237362(-)$1	297	71	76	14.9999
UUUAA	chr10:14944517-14944793(+)$1	276	50	55	14.9999
UUUAA	chr6:75964887-75965110(-)$1	223	168	173	14.9999
UUUAA	chr1:25568678-25568957(-)$1	279	254	259	14.9999
UUUAA	chr2:188331386-188331663(-)$1	277	88	93	14.9999
UUUAA	chr4:166261588-166261912(+)$1	324	85	90	14.9999
UUUAA	chr14:53194237-53194499(+)$1	262	247	252	14.9999
UUUAA	chr1:1327823-1328033(-)$1	210	108	113	14.9999
UUUAA	chr14:70238164-70238423(+)$1	259	44	49	14.9999
UUUAA	chr9:4711239-4711507(-)$1	268	17	22	14.9999
UUUAA	chr5:132211492-132211781(-)$1	289	14	19	14.9999
UUUAA	chr1:1327833-1328067(-)$1	234	142	147	14.9999
UUUAA	chr15:44063587-44063831(+)$1	244	145	150	14.9999
UUUAA	chr6:52318026-52318289(+)$1	263	26	31	14.9999
UUUAA	chr20:57025610-57025931(+)$1	321	277	282	14.9999

#otherMatches

#Struct PSSM
:::::	chr9:108313590-108313835(+)$1	245	7	12	14.9999
ee!!g	chr11:85989474-85989791(+)$1	317	282	287	14.9999
99999	chr1:78414039-78414258(-)$1	219	123	128	14.9999
RRRRR	chr17:25635480-25635692(+)$1	212	66	71	14.9999
^^^^^	chr18:67994454-67994734(+)$1	280	63	68	14.9999
hh###	chr1:90471857-90472122(+)$1	265	21	26	14.9999
eeeee	chr12:69663718-69663979(+)$1	261	107	112	14.9999
fflll	chr2:8823018-8823269(+)$1	251	220	225	14.9999
c22ff	chr5:139496008-139496273(+)$1	265	213	218	14.9999
eeeoo	chr12:53848223-53848559(+)$1	336	180	185	14.9999
:::::	chr1:29486481-29486705(-)$1	224	40	45	14.9999
gwwww	chr12:11090043-11090327(-)$1	284	193	198	14.9999
DDDD}	chr15:35271318-35271545(-)$1	227	215	220	14.9999
eee66	chr15:49281316-49281612(-)$1	296	60	65	14.9999
eeeee	chr7:17383624-17383916(+)$1	292	99	104	14.9999
:::::	chr3:156869387-156869660(-)$1	273	167	172	14.9999
hhhoo	chr2:170554269-170554551(+)$1	282	26	31	14.9999
dddd&	chr17:2586107-2586381(+)$1	274	16	21	14.9999
{CCCN	chr14:39651983-39652243(+)$1	260	28	33	14.9999
cc444	chr21:34931186-34931441(+)$1	255	193	198	14.9999
:::::	chr14:32628630-32628897(+)$1	267	96	101	14.9999
=====	chr3:132297896-132298163(-)$1	267	166	171	14.9999
ddd::	chr17:74731894-74732152(-)$1	258	188	193	14.9999
&&&&&	chr11:85374207-85374444(-)$1	237	55	60	14.9999
f5555	chr8:94742345-94742624(-)$1	279	238	243	14.9999
eee""	chr13:96251562-96251942(-)$1	380	14	19	14.9999
66ccc	chr6:17615406-17615680(-)$1	274	175	180	14.9999
nnggg	chr18:60245468-60245837(+)$1	369	167	172	14.9999
:::ii	chr17:38292777-38293092(+)$1	315	66	71	14.9999
:::JJ	chr12:105550287-105550543(+)$1	256	0	5	14.9999
mmmdd	chr6:47200271-47200526(-)$1	255	79	84	14.9999
qqqqq	chr9:91947561-91947814(+)$1	253	215	220	14.9999
:::::	chr21:40668284-40668547(-)$1	263	251	256	14.9999
4444c	chrX:128580637-128580876(-)$1	239	91	96	14.9999
hhmmm	chr17:48939551-48939859(-)$1	308	95	100	14.9999
JJ:::	chr7:26231279-26231552(-)$1	273	10	15	14.9999
FFFFF	chr13:79894055-79894381(-)$1	326	3	8	14.9999
EEEEK	chr4:68376610-68376964(-)$1	354	127	132	14.9999
FF???	chr4:433762-434080(-)$1	318	238	243	14.9999
$$$$$	chr3:169888898-169889231(-)$1	333	100	105	14.9999
sssss	chr12:22838082-22838349(+)$1	267	53	58	14.9999
iiiii	chr20:60714243-60714565(-)$1	322	221	226	14.9999
iii!!	chr17:8371222-8371490(+)$1	268	221	226	14.9999
=====	chr5:95223105-95223367(-)$1	262	46	51	14.9999
JJJJJ	chr3:140682287-140682625(+)$1	338	54	59	14.9999
:dddd	chr3:185207869-185208161(-)$1	292	95	100	14.9999
qqqqc	chr17:56082435-56082652(-)$1	217	69	74	14.9999
!!eee	chr3:27417054-27417289(-)$1	235	46	51	14.9999
ooocc	chr6:163986030-163986297(+)$1	267	93	98	14.9999
c"""d	chr3:123671298-123671654(-)$1	356	35	40	14.9999
:::::	chr10:121340059-121340282(-)$1	223	65	70	14.9999
:::::	chr10:75203882-75204171(-)$1	289	4	9	14.9999
!!bb[	chr2:8887685-8887958(-)$1	273	56	61	14.9999
:::::	chr3:140684570-140684803(+)$1	233	0	5	14.9999
:::::	chr3:27414907-27415207(-)$1	300	83	88	14.9999
DDDD{	chrX:56592978-56593323(+)$1	345	55	60	14.9999
hhhhh	chr17:25635439-25635680(+)$1	241	107	112	14.9999
:::::	chr5:112930754-112931040(+)$1	286	75	80	14.9999
eee::	chr13:32999258-32999578(-)$1	320	264	269	14.9999
:::::	chr2:61237065-61237362(-)$1	297	71	76	14.9999
:::::	chr10:14944517-14944793(+)$1	276	50	55	14.9999
cccqq	chr6:75964887-75965110(-)$1	223	168	173	14.9999
hnnnn	chr1:25568678-25568957(-)$1	279	254	259	14.9999
:::::	chr2:188331386-188331663(-)$1	277	88	93	14.9999
ii"""	chr4:166261588-166261912(+)$1	324	85	90	14.9999
@@@@@	chr14:53194237-53194499(+)$1	262	247	252	14.9999
fffff	chr1:1327823-1328033(-)$1	210	108	113	14.9999
===%%	chr14:70238164-70238423(+)$1	259	44	49	14.9999
JJJJJ	chr9:4711239-4711507(-)$1	268	17	22	14.9999
ggggg	chr5:132211492-132211781(-)$1	289	14	19	14.9999
fffff	chr1:1327833-1328067(-)$1	234	142	147	14.9999
55555	chr15:44063587-44063831(+)$1	244	145	150	14.9999
e"""d	chr6:52318026-52318289(+)$1	263	26	31	14.9999
@@@@@	chr20:57025610-57025931(+)$1	321	277	282	14.9999

#DB
.....	chr9:108313590-108313835(+)$1	1	7	12	14.9999
((..(	chr11:85989474-85989791(+)$1	1	282	287	14.9999
.....	chr1:78414039-78414258(-)$1	1	123	128	14.9999
.....	chr17:25635480-25635692(+)$1	1	66	71	14.9999
.....	chr18:67994454-67994734(+)$1	1	63	68	14.9999
((...	chr1:90471857-90472122(+)$1	1	21	26	14.9999
(((((	chr12:69663718-69663979(+)$1	1	107	112	14.9999
((...	chr2:8823018-8823269(+)$1	1	220	225	14.9999
)..))	chr5:139496008-139496273(+)$1	1	213	218	14.9999
(((..	chr12:53848223-53848559(+)$1	1	180	185	14.9999
.....	chr1:29486481-29486705(-)$1	1	40	45	14.9999
(....	chr12:11090043-11090327(-)$1	1	193	198	14.9999
)))).	chr15:35271318-35271545(-)$1	1	215	220	14.9999
)))..	chr15:49281316-49281612(-)$1	1	60	65	14.9999
)))))	chr7:17383624-17383916(+)$1	1	99	104	14.9999
.....	chr3:156869387-156869660(-)$1	1	167	172	14.9999
(((..	chr2:170554269-170554551(+)$1	1	26	31	14.9999
((((.	chr17:2586107-2586381(+)$1	1	16	21	14.9999
.(((.	chr14:39651983-39652243(+)$1	1	28	33	14.9999
))...	chr21:34931186-34931441(+)$1	1	193	198	14.9999
.....	chr14:32628630-32628897(+)$1	1	96	101	14.9999
)))))	chr3:132297896-132298163(-)$1	1	166	171	14.9999
)))..	chr17:74731894-74732152(-)$1	1	188	193	14.9999
.....	chr11:85374207-85374444(-)$1	1	55	60	14.9999
)....	chr8:94742345-94742624(-)$1	1	238	243	14.9999
(((..	chr13:96251562-96251942(-)$1	1	14	19	14.9999
..)))	chr6:17615406-17615680(-)$1	1	175	180	14.9999
..)))	chr18:60245468-60245837(+)$1	1	167	172	14.9999
...((	chr17:38292777-38293092(+)$1	1	66	71	14.9999
...((	chr12:105550287-105550543(+)$1	1	0	5	14.9999
...))	chr6:47200271-47200526(-)$1	1	79	84	14.9999
.....	chr9:91947561-91947814(+)$1	1	215	220	14.9999
.....	chr21:40668284-40668547(-)$1	1	251	256	14.9999
....)	chrX:128580637-128580876(-)$1	1	91	96	14.9999
((...	chr17:48939551-48939859(-)$1	1	95	100	14.9999
((...	chr7:26231279-26231552(-)$1	1	10	15	14.9999
(((((	chr13:79894055-79894381(-)$1	1	3	8	14.9999
((((.	chr4:68376610-68376964(-)$1	1	127	132	14.9999
))...	chr4:433762-434080(-)$1	1	238	243	14.9999
.....	chr3:169888898-169889231(-)$1	1	100	105	14.9999
.....	chr12:22838082-22838349(+)$1	1	53	58	14.9999
)))))	chr20:60714243-60714565(-)$1	1	221	226	14.9999
(((..	chr17:8371222-8371490(+)$1	1	221	226	14.9999
(((((	chr5:95223105-95223367(-)$1	1	46	51	14.9999
(((((	chr3:140682287-140682625(+)$1	1	54	59	14.9999
.((((	chr3:185207869-185208161(-)$1	1	95	100	14.9999
....)	chr17:56082435-56082652(-)$1	1	69	74	14.9999
..(((	chr3:27417054-27417289(-)$1	1	46	51	14.9999
...))	chr6:163986030-163986297(+)$1	1	93	98	14.9999
(...(	chr3:123671298-123671654(-)$1	1	35	40	14.9999
.....	chr10:121340059-121340282(-)$1	1	65	70	14.9999
.....	chr10:75203882-75204171(-)$1	1	4	9	14.9999
..((.	chr2:8887685-8887958(-)$1	1	56	61	14.9999
.....	chr3:140684570-140684803(+)$1	1	0	5	14.9999
.....	chr3:27414907-27415207(-)$1	1	83	88	14.9999
((((.	chrX:56592978-56593323(+)$1	1	55	60	14.9999
)))))	chr17:25635439-25635680(+)$1	1	107	112	14.9999
.....	chr5:112930754-112931040(+)$1	1	75	80	14.9999
)))..	chr13:32999258-32999578(-)$1	1	264	269	14.9999
.....	chr2:61237065-61237362(-)$1	1	71	76	14.9999
.....	chr10:14944517-14944793(+)$1	1	50	55	14.9999
(((..	chr6:75964887-75965110(-)$1	1	168	173	14.9999
(....	chr1:25568678-25568957(-)$1	1	254	259	14.9999
.....	chr2:188331386-188331663(-)$1	1	88	93	14.9999
((...	chr4:166261588-166261912(+)$1	1	85	90	14.9999
.....	chr14:53194237-53194499(+)$1	1	247	252	14.9999
)))))	chr1:1327823-1328033(-)$1	1	108	113	14.9999
(((..	chr14:70238164-70238423(+)$1	1	44	49	14.9999
(((((	chr9:4711239-4711507(-)$1	1	17	22	14.9999
)))))	chr5:132211492-132211781(-)$1	1	14	19	14.9999
)))))	chr1:1327833-1328067(-)$1	1	142	147	14.9999
.....	chr15:44063587-44063831(+)$1	1	145	150	14.9999
(...(	chr6:52318026-52318289(+)$1	1	26	31	14.9999
.....	chr20:57025610-57025931(+)$1	1	277	282	14.9999

#PSSM
U : 0.86	u : 0.13	
U : 0.86	u : 0.13	
U : 0.86	u : 0.13	
A : 0.86	a : 0.13	
A : 0.86	a : 0.13	

#score	1109.9999999999995
#seq	74
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_transcript_m1_run2.nuc.txt

#NT
AGAG	chr3:48040100-48040398(-)$1	298	104	108	11.9999
AGAG	chr11:62394420-62394627(-)$1	207	7	11	11.9999
AGAG	chr15:28380669-28380939(-)$1	270	151	155	11.9999
AGAG	chr15:75676567-75676829(-)$1	262	228	232	11.9999
AGAG	chr9:114140665-114140930(-)$1	265	1	5	11.9999
AGAG	chr10:74035116-74035325(+)$1	209	149	153	11.9999
AGAG	chr6:105821175-105821465(-)$1	290	112	116	11.9999
AGAG	chr17:39847428-39847637(+)$1	209	37	41	11.9999
AGAG	chr2:65488279-65488549(+)$1	270	133	137	11.9999
AGAG	chr5:98265085-98265409(+)$1	324	16	20	11.9999
AGAG	chr5:175957048-175957297(-)$1	249	127	131	11.9999
AGAG	chr10:88827718-88828014(-)$1	296	20	24	11.9999
AGAG	chr14:24606427-24606681(+)$1	254	25	29	11.9999
AGAG	chrX:153581267-153581484(-)$1	217	87	91	11.9999
AGAG	chr8:30657072-30657290(-)$1	218	54	58	11.9999
AGAG	chr12:123809948-123810181(-)$1	233	91	95	11.9999
AGAG	chrX:67742505-67742768(+)$1	263	16	20	11.9999
AGAG	chr1:1246895-1247151(-)$1	256	33	37	11.9999
AGAG	chrX:123211706-123211979(+)$1	273	63	67	11.9999
AGAG	chr6:30459017-30459286(+)$1	269	104	108	11.9999
AGAG	chr19:39926148-39926355(-)$1	207	158	162	11.9999
AGAG	chr8:48889194-48889445(+)$1	251	238	242	11.9999
AGAG	chr9:138774010-138774262(-)$1	252	38	42	11.9999
AGAG	chr1:151373160-151373400(+)$1	240	176	180	11.9999
AGAG	chr1:51005165-51005413(-)$1	248	170	174	11.9999
AGAG	chr14:23239924-23240196(+)$1	272	7	11	11.9999
AGAG	chr6:32130244-32130501(+)$1	257	206	210	11.9999
AGAG	chr8:91049017-91049269(+)$1	252	241	245	11.9999
AGAG	chr6:151789781-151790017(+)$1	236	97	101	11.9999
AGAG	chr20:49221134-49221410(-)$1	276	22	26	11.9999
AGAG	chr17:1303282-1303503(-)$1	221	28	32	11.9999
AGAG	chr22:22892046-22892251(-)$1	205	78	82	11.9999
AGAG	chr1:27271992-27272252(+)$1	260	30	34	11.9999
AGAG	chr11:63743614-63743879(+)$1	265	26	30	11.9999
agag	chr20:33470644-33470893(+)$1	249	215	219	11.9999
AGAG	chr3:184082836-184083116(+)$1	280	27	31	11.9999
AGAG	chr1:40209395-40209687(+)$1	292	149	153	11.9999
AGAG	chr5:115177062-115177362(-)$1	300	244	248	11.9999
AGAG	chr12:46321165-46321400(-)$1	235	1	5	11.9999
AGAG	chr7:141450011-141450332(+)$1	321	29	33	11.9999
AGAG	chr1:19488975-19489198(-)$1	223	163	167	11.9999
AGAG	chr12:53691741-53691954(+)$1	213	26	30	11.9999
AGAG	chr22:22890055-22890326(-)$1	271	79	83	11.9999
AGAG	chr19:3982143-3982360(-)$1	217	84	88	11.9999
AGAG	chr19:49949809-49950052(-)$1	243	213	217	11.9999
AGAG	chr6:33243854-33244063(+)$1	209	15	19	11.9999
AGAG	chr6:34213335-34213563(+)$1	228	93	97	11.9999
AGAG	chr19:42373683-42373903(+)$1	220	113	117	11.9999
AGAG	chr3:49063656-49063874(-)$1	218	145	149	11.9999
AGAG	chr19:9939224-9939451(+)$1	227	141	145	11.9999
AGAG	chr14:100742724-100742991(+)$1	267	165	169	11.9999
AGAG	chr12:133302762-133303025(-)$1	263	101	105	11.9999
AGAG	chr11:764288-764531(+)$1	243	187	191	11.9999
AGAG	chr9:127911988-127912233(-)$1	245	66	70	11.9999
AGAG	chr3:42678515-42678785(+)$1	270	47	51	11.9999
AGAG	chr22:38259177-38259418(+)$1	241	15	19	11.9999
AGAG	chr17:66525960-66526202(+)$1	242	59	63	11.9999
AGAG	chr2:27606163-27606420(-)$1	257	90	94	11.9999
AGAG	chr1:55224721-55224966(-)$1	245	26	30	11.9999
AGAG	chr3:52262575-52262848(-)$1	273	239	243	11.9999
AGAG	chr1:53238110-53238350(-)$1	240	192	196	11.9999
AGAG	chr1:31744243-31744447(-)$1	204	140	144	11.9999
AGAG	chr8:48696258-48696471(-)$1	213	31	35	11.9999
AGAG	chr1:207498910-207499168(+)$1	258	54	58	11.9999
AGAG	chr1:220157451-220157696(-)$1	245	24	28	11.9999
AGAG	chr12:6696504-6696722(-)$1	218	10	14	11.9999
AGAG	chr3:139079822-139080036(-)$1	214	51	55	11.9999
AGAG	chr2:96850639-96850988(-)$1	349	24	28	11.9999
AGAG	chr6:42603057-42603338(+)$1	281	148	152	11.9999
AGAG	chr18:2926643-2926903(-)$1	260	24	28	11.9999
AGAG	chr19:49251561-49251853(-)$1	292	60	64	11.9999
AGAG	chr18:13756356-13756584(+)$1	228	109	113	11.9999
AGAG	chr11:64854689-64854912(+)$1	223	19	23	11.9999
AGAG	chr8:109488975-109489222(+)$1	247	122	126	11.9999
AGAG	chr3:52288721-52288990(-)$1	269	130	134	11.9999
AGAG	chr17:19411390-19411634(+)$1	244	14	18	11.9999
AGAG	chr6:4823133-4823406(+)$1	273	155	159	11.9999
AGAG	chr2:170850790-170851057(+)$1	267	94	98	11.9999
AGAG	chr1:161009223-161009489(-)$1	266	98	102	11.9999
AGAG	chr12:54626704-54626936(-)$1	232	110	114	11.9999
AGAG	chr19:48830693-48830951(+)$1	258	107	111	11.9999
AGAG	chr2:159321472-159321721(+)$1	249	190	194	11.9999
agag	chr11:57190426-57190710(-)$1	284	45	49	11.9999

#otherMatches

#Struct PSSM
::::	chr16:27518168-27518459(-)$1	291	41	45	11.9999
EEEE	chr3:48040100-48040398(-)$1	298	104	108	11.9999
hhhh	chr11:62394420-62394627(-)$1	207	7	11	11.9999
eppp	chr15:28380669-28380939(-)$1	270	151	155	11.9999
c22e	chr15:75676567-75676829(-)$1	262	228	232	11.9999
::::	chr9:114140665-114140930(-)$1	265	1	5	11.9999
HH:g	chr10:74035116-74035325(+)$1	209	149	153	11.9999
bb[c	chr6:105821175-105821465(-)$1	290	112	116	11.9999
ee]b	chr17:39847428-39847637(+)$1	209	37	41	11.9999
22cc	chr2:65488279-65488549(+)$1	270	133	137	11.9999
EEEE	chr5:98265085-98265409(+)$1	324	16	20	11.9999
dddd	chr5:175957048-175957297(-)$1	249	127	131	11.9999
hhhh	chr10:88827718-88828014(-)$1	296	20	24	11.9999
PPPP	chr14:24606427-24606681(+)$1	254	25	29	11.9999
D{CC	chrX:153581267-153581484(-)$1	217	87	91	11.9999
ddd2	chr8:30657072-30657290(-)$1	218	54	58	11.9999
d[a!	chr12:123809948-123810181(-)$1	233	91	95	11.9999
===m	chrX:67742505-67742768(+)$1	263	16	20	11.9999
EKKD	chr1:1246895-1247151(-)$1	256	33	37	11.9999
nnnn	chrX:123211706-123211979(+)$1	273	63	67	11.9999
qqqq	chr6:30459017-30459286(+)$1	269	104	108	11.9999
$ddd	chr19:39926148-39926355(-)$1	207	158	162	11.9999
BB}D	chr8:48889194-48889445(+)$1	251	238	242	11.9999
fffm	chr9:138774010-138774262(-)$1	252	38	42	11.9999
dd]c	chr1:151373160-151373400(+)$1	240	176	180	11.9999
ee[b	chr1:51005165-51005413(-)$1	248	170	174	11.9999
""dd	chr14:23239924-23240196(+)$1	272	7	11	11.9999
eeee	chr6:32130244-32130501(+)$1	257	206	210	11.9999
gggg	chr8:91049017-91049269(+)$1	252	241	245	11.9999
%%%%	chr6:151789781-151790017(+)$1	236	97	101	11.9999
bb[c	chr20:49221134-49221410(-)$1	276	22	26	11.9999
gggc	chr17:1303282-1303503(-)$1	221	28	32	11.9999
ffff	chr22:22892046-22892251(-)$1	205	78	82	11.9999
sccc	chr1:27271992-27272252(+)$1	260	30	34	11.9999
ffff	chr11:63743614-63743879(+)$1	265	26	30	11.9999
333e	chr20:33470644-33470893(+)$1	249	215	219	11.9999
EEEE	chr3:184082836-184083116(+)$1	280	27	31	11.9999
GGGG	chr1:40209395-40209687(+)$1	292	149	153	11.9999
pa]d	chr5:115177062-115177362(-)$1	300	244	248	11.9999
:::c	chr12:46321165-46321400(-)$1	235	1	5	11.9999
HHHH	chr7:141450011-141450332(+)$1	321	29	33	11.9999
cooo	chr1:19488975-19489198(-)$1	223	163	167	11.9999
"""b	chr12:53691741-53691954(+)$1	213	26	30	11.9999
::::	chr22:22890055-22890326(-)$1	271	79	83	11.9999
::::	chr19:3982143-3982360(-)$1	217	84	88	11.9999
cc:C	chr19:49949809-49950052(-)$1	243	213	217	11.9999
GGGG	chr6:33243854-33244063(+)$1	209	15	19	11.9999
dd]a	chr6:34213335-34213563(+)$1	228	93	97	11.9999
rccc	chr19:42373683-42373903(+)$1	220	113	117	11.9999
&&&&	chr3:49063656-49063874(-)$1	218	145	149	11.9999
JJJJ	chr19:9939224-9939451(+)$1	227	141	145	11.9999
vvvv	chr14:100742724-100742991(+)$1	267	165	169	11.9999
ffmm	chr12:133302762-133303025(-)$1	263	101	105	11.9999
:::e	chr11:764288-764531(+)$1	243	187	191	11.9999
e::d	chr9:127911988-127912233(-)$1	245	66	70	11.9999
eee!	chr3:42678515-42678785(+)$1	270	47	51	11.9999
a[ff	chr22:38259177-38259418(+)$1	241	15	19	11.9999
}III	chr17:66525960-66526202(+)$1	242	59	63	11.9999
c!!b	chr2:27606163-27606420(-)$1	257	90	94	11.9999
(((f	chr1:55224721-55224966(-)$1	245	26	30	11.9999
GYYD	chr3:52262575-52262848(-)$1	273	239	243	11.9999
[bbl	chr1:53238110-53238350(-)$1	240	192	196	11.9999
::ff	chr1:31744243-31744447(-)$1	204	140	144	11.9999
[ccc	chr8:48696258-48696471(-)$1	213	31	35	11.9999
:EEE	chr1:207498910-207499168(+)$1	258	54	58	11.9999
llgg	chr1:220157451-220157696(-)$1	245	24	28	11.9999
::::	chr12:6696504-6696722(-)$1	218	10	14	11.9999
ffff	chr3:139079822-139080036(-)$1	214	51	55	11.9999
KCCC	chr2:96850639-96850988(-)$1	349	24	28	11.9999
%%dd	chr6:42603057-42603338(+)$1	281	148	152	11.9999
lhhh	chr18:2926643-2926903(-)$1	260	24	28	11.9999
ueee	chr19:49251561-49251853(-)$1	292	60	64	11.9999
iiii	chr18:13756356-13756584(+)$1	228	109	113	11.9999
HHHH	chr11:64854689-64854912(+)$1	223	19	23	11.9999
eeee	chr8:109488975-109489222(+)$1	247	122	126	11.9999
nna2	chr3:52288721-52288990(-)$1	269	130	134	11.9999
hhhn	chr17:19411390-19411634(+)$1	244	14	18	11.9999
====	chr6:4823133-4823406(+)$1	273	155	159	11.9999
hhhh	chr2:170850790-170851057(+)$1	267	94	98	11.9999
eeee	chr1:161009223-161009489(-)$1	266	98	102	11.9999
ee!!	chr12:54626704-54626936(-)$1	232	110	114	11.9999
nnnn	chr19:48830693-48830951(+)$1	258	107	111	11.9999
!bbn	chr2:159321472-159321721(+)$1	249	190	194	11.9999
E{EE	chr11:57190426-57190710(-)$1	284	45	49	11.9999

#DB
....	chr16:27518168-27518459(-)$1	1	41	45	11.9999
((((	chr3:48040100-48040398(-)$1	1	104	108	11.9999
((((	chr11:62394420-62394627(-)$1	1	7	11	11.9999
(...	chr15:28380669-28380939(-)$1	1	151	155	11.9999
)..)	chr15:75676567-75676829(-)$1	1	228	232	11.9999
....	chr9:114140665-114140930(-)$1	1	1	5	11.9999
)).(	chr10:74035116-74035325(+)$1	1	149	153	11.9999
((.(	chr6:105821175-105821465(-)$1	1	112	116	11.9999
)).)	chr17:39847428-39847637(+)$1	1	37	41	11.9999
..))	chr2:65488279-65488549(+)$1	1	133	137	11.9999
((((	chr5:98265085-98265409(+)$1	1	16	20	11.9999
))))	chr5:175957048-175957297(-)$1	1	127	131	11.9999
((((	chr10:88827718-88828014(-)$1	1	20	24	11.9999
....	chr14:24606427-24606681(+)$1	1	25	29	11.9999
(.((	chrX:153581267-153581484(-)$1	1	87	91	11.9999
))).	chr8:30657072-30657290(-)$1	1	54	58	11.9999
(.(.	chr12:123809948-123810181(-)$1	1	91	95	11.9999
(((.	chrX:67742505-67742768(+)$1	1	16	20	11.9999
(..(	chr1:1246895-1247151(-)$1	1	33	37	11.9999
....	chrX:123211706-123211979(+)$1	1	63	67	11.9999
....	chr6:30459017-30459286(+)$1	1	104	108	11.9999
.(((	chr19:39926148-39926355(-)$1	1	158	162	11.9999
)).)	chr8:48889194-48889445(+)$1	1	238	242	11.9999
(((.	chr9:138774010-138774262(-)$1	1	38	42	11.9999
)).)	chr1:151373160-151373400(+)$1	1	176	180	11.9999
((.(	chr1:51005165-51005413(-)$1	1	170	174	11.9999
..((	chr14:23239924-23240196(+)$1	1	7	11	11.9999
((((	chr6:32130244-32130501(+)$1	1	206	210	11.9999
))))	chr8:91049017-91049269(+)$1	1	241	245	11.9999
....	chr6:151789781-151790017(+)$1	1	97	101	11.9999
((.(	chr20:49221134-49221410(-)$1	1	22	26	11.9999
))))	chr17:1303282-1303503(-)$1	1	28	32	11.9999
))))	chr22:22892046-22892251(-)$1	1	78	82	11.9999
.)))	chr1:27271992-27272252(+)$1	1	30	34	11.9999
((((	chr11:63743614-63743879(+)$1	1	26	30	11.9999
...)	chr20:33470644-33470893(+)$1	1	215	219	11.9999
((((	chr3:184082836-184083116(+)$1	1	27	31	11.9999
))))	chr1:40209395-40209687(+)$1	1	149	153	11.9999
.).)	chr5:115177062-115177362(-)$1	1	244	248	11.9999
...(	chr12:46321165-46321400(-)$1	1	1	5	11.9999
((((	chr7:141450011-141450332(+)$1	1	29	33	11.9999
(...	chr1:19488975-19489198(-)$1	1	163	167	11.9999
...(	chr12:53691741-53691954(+)$1	1	26	30	11.9999
....	chr22:22890055-22890326(-)$1	1	79	83	11.9999
....	chr19:3982143-3982360(-)$1	1	84	88	11.9999
)).)	chr19:49949809-49950052(-)$1	1	213	217	11.9999
((((	chr6:33243854-33244063(+)$1	1	15	19	11.9999
)).)	chr6:34213335-34213563(+)$1	1	93	97	11.9999
.)))	chr19:42373683-42373903(+)$1	1	113	117	11.9999
....	chr3:49063656-49063874(-)$1	1	145	149	11.9999
))))	chr19:9939224-9939451(+)$1	1	141	145	11.9999
....	chr14:100742724-100742991(+)$1	1	165	169	11.9999
((..	chr12:133302762-133303025(-)$1	1	101	105	11.9999
...(	chr11:764288-764531(+)$1	1	187	191	11.9999
)..(	chr9:127911988-127912233(-)$1	1	66	70	11.9999
(((.	chr3:42678515-42678785(+)$1	1	47	51	11.9999
(.((	chr22:38259177-38259418(+)$1	1	15	19	11.9999
.)))	chr17:66525960-66526202(+)$1	1	59	63	11.9999
(..(	chr2:27606163-27606420(-)$1	1	90	94	11.9999
...(	chr1:55224721-55224966(-)$1	1	26	30	11.9999
)..)	chr3:52262575-52262848(-)$1	1	239	243	11.9999
.((.	chr1:53238110-53238350(-)$1	1	192	196	11.9999
..((	chr1:31744243-31744447(-)$1	1	140	144	11.9999
.(((	chr8:48696258-48696471(-)$1	1	31	35	11.9999
.(((	chr1:207498910-207499168(+)$1	1	54	58	11.9999
..))	chr1:220157451-220157696(-)$1	1	24	28	11.9999
....	chr12:6696504-6696722(-)$1	1	10	14	11.9999
))))	chr3:139079822-139080036(-)$1	1	51	55	11.9999
.(((	chr2:96850639-96850988(-)$1	1	24	28	11.9999
..((	chr6:42603057-42603338(+)$1	1	148	152	11.9999
.)))	chr18:2926643-2926903(-)$1	1	24	28	11.9999
.)))	chr19:49251561-49251853(-)$1	1	60	64	11.9999
((((	chr18:13756356-13756584(+)$1	1	109	113	11.9999
((((	chr11:64854689-64854912(+)$1	1	19	23	11.9999
((((	chr8:109488975-109489222(+)$1	1	122	126	11.9999
..).	chr3:52288721-52288990(-)$1	1	130	134	11.9999
(((.	chr17:19411390-19411634(+)$1	1	14	18	11.9999
))))	chr6:4823133-4823406(+)$1	1	155	159	11.9999
((((	chr2:170850790-170851057(+)$1	1	94	98	11.9999
((((	chr1:161009223-161009489(-)$1	1	98	102	11.9999
((..	chr12:54626704-54626936(-)$1	1	110	114	11.9999
....	chr19:48830693-48830951(+)$1	1	107	111	11.9999
.((.	chr2:159321472-159321721(+)$1	1	190	194	11.9999
(.((	chr11:57190426-57190710(-)$1	1	45	49	11.9999

#PSSM
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	

#score	1007.9999999999995
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_transcript_m3_run1.nuc.txt

#NT
AAGCCCAAGG	chr6:26055872-26056103(-)$1	231	26	36	20.9375
CUGGCCAAGC	chr6:26216372-26216576(-)$1	204	23	33	15.9375
AAGGCCAAGG	chr6:26124750-26124979(+)$1	229	85	95	23.8541
AAGGCCAAGG	chr6:26124737-26124950(+)$1	213	98	108	23.8541
AAGCCCAAGG	chr6:26055868-26056072(-)$1	204	10	20	20.9375
AAGGCCAAGG	chr6:26055952-26056192(-)$1	240	61	71	23.8541
AAGGCCAAGA	chr6:27775881-27776120(+)$1	239	145	155	20.4166
AAGGCCAAGG	chr6:26198977-26199246(-)$1	269	150	160	23.8541
AAGGCCAAGU	chr11:118965898-118966114(-)$1	216	49	59	20.4166
CUGGCCAAGC	chr1:149857670-149857939(-)$1	269	67	77	15.9375
AAGGCCAUGG	chr1:149783661-149783992(-)$1	331	285	295	19.2708
AAGGCCAAAG	chr6:26157167-26157441(+)$1	274	18	28	19.2708
AUGCCCAAGG	chr6:27778110-27778356(+)$1	246	101	111	18.8541
AAGGCGAAGG	chr6:27101102-27101336(+)$1	234	123	133	20.6250
AAGCCGAAGG	chr6:26234340-26234569(-)$1	229	26	36	17.7083
AAGCCCAAGG	chr6:26055910-26056117(-)$1	207	40	50	20.9375
AAGGCCAAGG	chr6:26217459-26217694(+)$1	235	118	128	23.8541
AAGGCGAAGG	chr6:27101136-27101368(+)$1	232	89	99	20.6250
AAGGCCAAGG	chr6:26124816-26125063(+)$1	247	19	29	23.8541
AUGCCCAAGG	chr1:149784741-149784985(-)$1	244	109	119	18.8541
AAGGCGAAGG	chr6:27101187-27101414(+)$1	227	38	48	20.6250
AUGCCCAAGG	chr6:26250327-26250600(-)$1	273	127	137	18.8541
CUGGCCAAGC	chr6:26158665-26158934(+)$1	269	50	60	15.9375
CUGGCCAAGC	chr6:26216376-26216595(-)$1	219	42	52	15.9375
AUGCCCAAGG	chr6:27778166-27778412(+)$1	246	45	55	18.8541
AUGCCCAAGG	chr6:27778156-27778366(+)$1	210	55	65	18.8541
AAGGCCAAGG	chr6:26217549-26217763(+)$1	214	28	38	23.8541
AAGGCCAAAG	chr6:26234369-26234611(-)$1	242	23	33	19.2708
AAGGCCAAGG	chr6:26124801-26125016(+)$1	215	34	44	23.8541
AAGGCGAAGG	chr6:27776257-27776474(+)$1	217	105	115	20.6250
CUGGCCAAGC	chr6:27806700-27806930(+)$1	230	57	67	15.9375
AAGGCCAAGU	chr11:118965970-118966233(-)$1	263	168	178	20.4166
AAGGCCAAGG	chr6:26124687-26124937(+)$1	250	148	158	23.8541
AAGGCGAAGG	chr6:27776274-27776518(+)$1	244	88	98	20.6250
AAGGCGAAGG	chr6:27101085-27101301(+)$1	216	140	150	20.6250
AAGGCCAAGG	chr6:27805558-27805834(-)$1	276	92	102	23.8541
CUGGCCAAGC	chr6:27806730-27806944(+)$1	214	27	37	15.9375
AAGGCCAAGG	chr6:26055932-26056152(-)$1	220	21	31	23.8541
AAGGCCAUGG	chr6:27100255-27100499(-)$1	244	141	151	19.2708
AAGGCGAAGG	chr6:27776204-27776455(+)$1	251	158	168	20.6250
AAGCCCAAGG	chr6:26055917-26056127(-)$1	210	50	60	20.9375
CUGGCCAAGC	chr6:27775158-27775403(-)$1	245	37	47	15.9375
AAGGCCAAGG	chr6:26055927-26056132(-)$1	205	1	11	23.8541
CUGGCCAAGC	chr1:228646099-228646358(+)$1	259	49	59	15.9375
AAGGCCAAGA	chr6:27100755-27100971(+)$1	216	134	144	20.4166
CUGGCCAAGC	chr1:149783334-149783576(-)$1	242	16	26	15.9375
AAGGCCAAGG	chr1:228645004-228645246(-)$1	242	103	113	23.8541

#otherMatches

#Struct PSSM
55ccc333cc	chr1:149813687-149813993(-)$1	306	103	113	19.8958
cdddd"""cc	chr6:26055872-26056103(-)$1	231	26	36	20.9375
dddd22eeee	chr6:26216372-26216576(-)$1	204	23	33	15.9375
%%%ccclllc	chr6:26124750-26124979(+)$1	229	85	95	23.8541
YYDDDDZZZC	chr6:26124737-26124950(+)$1	213	98	108	23.8541
&&&&&&&eee	chr6:26055868-26056072(-)$1	204	10	20	20.9375
77ccc:::cc	chr6:26055952-26056192(-)$1	240	61	71	23.8541
!!bb!!dddd	chr6:27775881-27776120(+)$1	239	145	155	20.4166
::ffffff$$	chr6:26198977-26199246(-)$1	269	150	160	23.8541
qqdddd22ee	chr11:118965898-118966114(-)$1	216	49	59	20.4166
c]ccc333dd	chr1:149857670-149857939(-)$1	269	67	77	15.9375
eooooooeee	chr1:149783661-149783992(-)$1	331	285	295	19.2708
::HHHHHHHH	chr6:26157167-26157441(+)$1	274	18	28	19.2708
D:DDDD::bb	chr6:27778110-27778356(+)$1	246	101	111	18.8541
ggg[a!!bb[	chr6:27101102-27101336(+)$1	234	123	133	20.6250
!!ccc####c	chr6:26234340-26234569(-)$1	229	26	36	17.7083
cdddd"""cc	chr6:26055910-26056117(-)$1	207	40	50	20.9375
ppccc::::c	chr6:26217459-26217694(+)$1	235	118	128	23.8541
ggg[a!!bb[	chr6:27101136-27101368(+)$1	232	89	99	20.6250
"""ccclllc	chr6:26124816-26125063(+)$1	247	19	29	23.8541
EEEEE:::bb	chr1:149784741-149784985(-)$1	244	109	119	18.8541
ggg[a!!bb[	chr6:27101187-27101414(+)$1	227	38	48	20.6250
gggggg!!bb	chr6:26250327-26250600(-)$1	273	127	137	18.8541
ccnnnnnccc	chr6:26158665-26158934(+)$1	269	50	60	15.9375
dddd22eeee	chr6:26216376-26216595(-)$1	219	42	52	15.9375
::DDDD::bb	chr6:27778166-27778412(+)$1	246	45	55	18.8541
::DDDD::bb	chr6:27778156-27778366(+)$1	210	55	65	18.8541
ppccc::FFF	chr6:26217549-26217763(+)$1	214	28	38	23.8541
[dddd####c	chr6:26234369-26234611(-)$1	242	23	33	19.2708
%%%ccclllc	chr6:26124801-26125016(+)$1	215	34	44	23.8541
ppccc333dd	chr6:27776257-27776474(+)$1	217	105	115	20.6250
eeeee22ddd	chr6:27806700-27806930(+)$1	230	57	67	15.9375
}EEEEE::::	chr11:118965970-118966233(-)$1	263	168	178	20.4166
%%%ccclllc	chr6:26124687-26124937(+)$1	250	148	158	23.8541
ppccc333dd	chr6:27776274-27776518(+)$1	244	88	98	20.6250
ppccc333ee	chr6:27101085-27101301(+)$1	216	140	150	20.6250
ppccca22dd	chr6:27805558-27805834(-)$1	276	92	102	23.8541
eeeee22ddd	chr6:27806730-27806944(+)$1	214	27	37	15.9375
ppccc:::cc	chr6:26055932-26056152(-)$1	220	21	31	23.8541
eooooooeee	chr6:27100255-27100499(-)$1	244	141	151	19.2708
ppccc333dd	chr6:27776204-27776455(+)$1	251	158	168	20.6250
cdddd"""cc	chr6:26055917-26056127(-)$1	210	50	60	20.9375
c]ccc333dd	chr6:27775158-27775403(-)$1	245	37	47	15.9375
::::::::dd	chr6:26055927-26056132(-)$1	205	1	11	23.8541
g]dddd::::	chr1:228646099-228646358(+)$1	259	49	59	15.9375
##ccc!!eee	chr6:27100755-27100971(+)$1	216	134	144	20.4166
ccnnnnnccc	chr1:149783334-149783576(-)$1	242	16	26	15.9375
88dddd22dd	chr1:228645004-228645246(-)$1	242	103	113	23.8541

#DB
..)))...))	chr1:149813687-149813993(-)$1	1	103	113	19.8958
(((((...((	chr6:26055872-26056103(-)$1	1	26	36	20.9375
))))..))))	chr6:26216372-26216576(-)$1	1	23	33	15.9375
...(((...)	chr6:26124750-26124979(+)$1	1	85	95	23.8541
..))))...)	chr6:26124737-26124950(+)$1	1	98	108	23.8541
.......(((	chr6:26055868-26056072(-)$1	1	10	20	20.9375
..)))...((	chr6:26055952-26056192(-)$1	1	61	71	23.8541
..((..((((	chr6:27775881-27776120(+)$1	1	145	155	20.4166
..((((((..	chr6:26198977-26199246(-)$1	1	150	160	23.8541
..))))..))	chr11:118965898-118966114(-)$1	1	49	59	20.4166
).)))...))	chr1:149857670-149857939(-)$1	1	67	77	15.9375
(......)))	chr1:149783661-149783992(-)$1	1	285	295	19.2708
..((((((((	chr6:26157167-26157441(+)$1	1	18	28	19.2708
(.((((..((	chr6:27778110-27778356(+)$1	1	101	111	18.8541
(((.(..((.	chr6:27101102-27101336(+)$1	1	123	133	20.6250
..(((....(	chr6:26234340-26234569(-)$1	1	26	36	17.7083
(((((...((	chr6:26055910-26056117(-)$1	1	40	50	20.9375
..)))....(	chr6:26217459-26217694(+)$1	1	118	128	23.8541
(((.(..((.	chr6:27101136-27101368(+)$1	1	89	99	20.6250
...(((...)	chr6:26124816-26125063(+)$1	1	19	29	23.8541
(((((...((	chr1:149784741-149784985(-)$1	1	109	119	18.8541
(((.(..((.	chr6:27101187-27101414(+)$1	1	38	48	20.6250
((((((..((	chr6:26250327-26250600(-)$1	1	127	137	18.8541
((.....)))	chr6:26158665-26158934(+)$1	1	50	60	15.9375
))))..))))	chr6:26216376-26216595(-)$1	1	42	52	15.9375
..((((..((	chr6:27778166-27778412(+)$1	1	45	55	18.8541
..((((..((	chr6:27778156-27778366(+)$1	1	55	65	18.8541
..)))..(((	chr6:26217549-26217763(+)$1	1	28	38	23.8541
.((((....(	chr6:26234369-26234611(-)$1	1	23	33	19.2708
...(((...)	chr6:26124801-26125016(+)$1	1	34	44	23.8541
..)))...))	chr6:27776257-27776474(+)$1	1	105	115	20.6250
)))))..)))	chr6:27806700-27806930(+)$1	1	57	67	15.9375
.)))))....	chr11:118965970-118966233(-)$1	1	168	178	20.4166
...(((...)	chr6:26124687-26124937(+)$1	1	148	158	23.8541
..)))...))	chr6:27776274-27776518(+)$1	1	88	98	20.6250
..)))...))	chr6:27101085-27101301(+)$1	1	140	150	20.6250
..))))..))	chr6:27805558-27805834(-)$1	1	92	102	23.8541
)))))..)))	chr6:27806730-27806944(+)$1	1	27	37	15.9375
..)))...((	chr6:26055932-26056152(-)$1	1	21	31	23.8541
(......)))	chr6:27100255-27100499(-)$1	1	141	151	19.2708
..)))...))	chr6:27776204-27776455(+)$1	1	158	168	20.6250
(((((...((	chr6:26055917-26056127(-)$1	1	50	60	20.9375
).)))...))	chr6:27775158-27775403(-)$1	1	37	47	15.9375
........((	chr6:26055927-26056132(-)$1	1	1	11	23.8541
).))))....	chr1:228646099-228646358(+)$1	1	49	59	15.9375
..(((..(((	chr6:27100755-27100971(+)$1	1	134	144	20.4166
((.....)))	chr1:149783334-149783576(-)$1	1	16	26	15.9375
..))))..))	chr1:228645004-228645246(-)$1	1	103	113	23.8541

#PSSM
A : 0.81	C : 0.18	
A : 0.70	U : 0.29	
G : 1.00	
G : 0.79	C : 0.20	
C : 1.00	
C : 0.81	G : 0.16	A : 0.02	
A : 1.00	
A : 0.95	U : 0.04	
G : 0.95	A : 0.04	
G : 0.72	C : 0.18	A : 0.04	U : 0.04	

#score	972.2916666666678
#seq	48
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_CDS_m3_run2.nuc.txt

#NT
CUCCCUACU	chrM:10522-10733(+)$1	211	31	40	14.4509
CUUACUUCC	chr10:50534854-50535129(+)$1	275	87	96	12.5882
CUCCCUUCC	chrM:11185-11389(+)$1	204	42	51	20.2352
CUCACUUGC	chr3:12942518-12942826(-)$1	308	4	13	12.7843
AUCCCUUUC	chr4:145041542-145041773(-)$1	231	3	12	11.3137
CUCCCUUCC	chrM:11167-11369(+)$1	202	60	69	20.2352
UCCCCUUCC	chr1:12004404-12004699(+)$1	295	0	9	12.2941
CUCCCUUCC	chrM:11056-11268(+)$1	212	171	180	20.2352
CUCCCUACU	chrM:10533-10740(+)$1	207	20	29	14.4509
CACCCUACC	chrM:7208-7449(+)$1	241	194	203	13.1764
CUCCCUUAG	chrM:6291-6503(+)$1	212	1	10	13.1764
CUCCCUACA	chrM:10987-11192(+)$1	205	72	81	14.3529
CUCCCUUCC	chrM:11068-11271(+)$1	203	159	168	20.2352
UUCACUUCC	chrM:9289-9516(+)$1	227	21	30	12.7843
CCCCUUUCC	chr19:10488886-10489241(-)$1	355	128	137	12.0000
CUCCCUUCC	chrM:11226-11434(+)$1	208	1	10	20.2352
CUCCCUUCA	chrM:9744-9973(+)$1	229	13	22	17.3921
CUCCCUUCC	chrM:11144-11347(+)$1	203	83	92	20.2352
CUCCUAUCC	chrM:11890-12121(+)$1	231	205	214	11.8039
CUCCCUaca	chr19:41083788-41084110(+)$1	322	60	69	14.3529
UUCACUUCC	chrM:9241-9457(+)$1	216	69	78	12.7843
CUCACUUCU	chrM:10463-10668(+)$1	205	48	57	14.3529
CUCCCUACA	chrM:10995-11202(+)$1	207	64	73	14.3529
CUCCCUACU	chrM:10513-10722(+)$1	209	40	49	14.4509
cacccaucc	chr19:10488707-10489047(-)$1	340	243	252	12.3921
CUCCCUGCC	chr6:31715102-31715374(+)$1	272	39	48	16.7058
CUCCCUACA	chrM:10983-11186(+)$1	203	76	85	14.3529
CUCACUUCU	chrM:10481-10693(+)$1	212	30	39	14.3529
CUCACUUCU	chrM:10493-10713(+)$1	220	18	27	14.3529
CUCCCUUCC	chrM:11174-11378(+)$1	204	53	62	20.2352
CUCACAUCC	chrM:11639-11862(+)$1	223	81	90	13.2745
CUCCCAUAC	chr4:17804992-17805293(-)$1	301	7	16	12.0980
CUCCCUUCC	chrM:11217-11426(+)$1	209	10	19	20.2352
CUCCCUUCC	chrM:11178-11385(+)$1	207	49	58	20.2352
CUGCCUGCC	chr15:59373166-59373518(+)$1	352	4	13	12.3921
CCCCCUUCG	chrM:3787-4003(+)$1	216	106	115	13.8627
CUCCCUUCC	chrM:11021-11256(+)$1	235	206	215	20.2352
CUCCCUGCC	chr19:41938186-41938486(-)$1	300	201	210	16.7058
CCCCCUUCG	chrM:3710-3924(+)$1	214	183	192	13.8627
cucccuucc	chr10:50534929-50535212(+)$1	283	257	266	20.2352
CUGCCUUGC	chr17:38244355-38244596(+)$1	241	139	148	11.6078
CUCCCUCCG	chr8:91094784-91095120(-)$1	336	86	95	13.7647
CUCCCUUCC	chrM:11193-11397(+)$1	204	34	43	20.2352
CCCCCUUCG	chrM:3746-3957(+)$1	211	147	156	13.8627
CCCCCUUCG	chrM:3701-3906(+)$1	205	192	201	13.8627
CUCACAUCC	chrM:11668-11871(+)$1	203	52	61	13.2745
CUCCCUUCC	chr19:47993864-47994145(-)$1	281	12	21	20.2352
cugcccucc	chr17:80218772-80219017(-)$1	245	212	221	11.8039
CUCCCUUCC	chrM:11190-11393(+)$1	203	37	46	20.2352
CUCCCUUCC	chrM:11170-11374(+)$1	204	57	66	20.2352

#otherMatches

#Struct PSSM
DDDdddd""	chr12:123997759-123998013(-)$1	254	53	62	12.1960
:::ccc[cc	chrM:10522-10733(+)$1	211	31	40	14.4509
GGG::::::	chr10:50534854-50535129(+)$1	275	87	96	12.5882
rrrrrrrrr	chrM:11185-11389(+)$1	204	42	51	20.2352
pppppppdd	chr3:12942518-12942826(-)$1	308	4	13	12.7843
::::::ccc	chr4:145041542-145041773(-)$1	231	3	12	11.3137
rrrrrrrrr	chrM:11167-11369(+)$1	202	60	69	20.2352
:::::::::	chr1:12004404-12004699(+)$1	295	0	9	12.2941
:::::::::	chrM:11056-11268(+)$1	212	171	180	20.2352
:::ccc[cc	chrM:10533-10740(+)$1	207	20	29	14.4509
:::::::::	chrM:7208-7449(+)$1	241	194	203	13.1764
:eeeeemmm	chrM:6291-6503(+)$1	212	1	10	13.1764
:::::::::	chrM:10987-11192(+)$1	205	72	81	14.3529
rrrrrrrrr	chrM:11068-11271(+)$1	203	159	168	20.2352
DDDLLLBBO	chrM:9289-9516(+)$1	227	21	30	12.7843
ccccc====	chr19:10488886-10489241(-)$1	355	128	137	12.0000
::::DDDD:	chrM:11226-11434(+)$1	208	1	10	20.2352
ccc::::::	chrM:9744-9973(+)$1	229	13	22	17.3921
rrrrrrrrr	chrM:11144-11347(+)$1	203	83	92	20.2352
:::::::::	chrM:11890-12121(+)$1	231	205	214	11.8039
^^^^^^^^^	chr19:41083788-41084110(+)$1	322	60	69	14.3529
^^^^^^^^^	chrM:9241-9457(+)$1	216	69	78	12.7843
:bb[hhhhh	chrM:10463-10668(+)$1	205	48	57	14.3529
:::::::::	chrM:10995-11202(+)$1	207	64	73	14.3529
^^^^ccc]c	chrM:10513-10722(+)$1	209	40	49	14.4509
IIIII????	chr19:10488707-10489047(-)$1	340	243	252	12.3921
:::dddduu	chr6:31715102-31715374(+)$1	272	39	48	16.7058
:::::::::	chrM:10983-11186(+)$1	203	76	85	14.3529
:bb[hhhhh	chrM:10481-10693(+)$1	212	30	39	14.3529
:bb[hhhhh	chrM:10493-10713(+)$1	220	18	27	14.3529
rrrrrrrrr	chrM:11174-11378(+)$1	204	53	62	20.2352
ooooooccc	chrM:11639-11862(+)$1	223	81	90	13.2745
MMMMDDDD:	chr4:17804992-17805293(-)$1	301	7	16	12.0980
rrrrrrrrr	chrM:11217-11426(+)$1	209	10	19	20.2352
rrrrrrrrr	chrM:11178-11385(+)$1	207	49	58	20.2352
:CCC{CCC:	chr15:59373166-59373518(+)$1	352	4	13	12.3921
bhhhhhhhh	chrM:3787-4003(+)$1	216	106	115	13.8627
rrrrrrrrr	chrM:11021-11256(+)$1	235	206	215	20.2352
ooooccc22	chr19:41938186-41938486(-)$1	300	201	210	16.7058
bhhhhhhhh	chrM:3710-3924(+)$1	214	183	192	13.8627
^^^^^^^^^	chr10:50534929-50535212(+)$1	283	257	266	20.2352
======[cc	chr17:38244355-38244596(+)$1	241	139	148	11.6078
bbqqqqqqq	chr8:91094784-91095120(-)$1	336	86	95	13.7647
rrrrrrrrr	chrM:11193-11397(+)$1	204	34	43	20.2352
bhhhhhhhh	chrM:3746-3957(+)$1	211	147	156	13.8627
nnnnndddd	chrM:3701-3906(+)$1	205	192	201	13.8627
ooooooccc	chrM:11668-11871(+)$1	203	52	61	13.2745
A{EEEEEMM	chr19:47993864-47994145(-)$1	281	12	21	20.2352
hhhhccc33	chr17:80218772-80219017(-)$1	245	212	221	11.8039
rrrrrrrrr	chrM:11190-11393(+)$1	203	37	46	20.2352
rrrrrrrrr	chrM:11170-11374(+)$1	204	57	66	20.2352

#DB
(((((((..	chr12:123997759-123998013(-)$1	1	53	62	12.1960
...(((.((	chrM:10522-10733(+)$1	1	31	40	14.4509
(((......	chr10:50534854-50535129(+)$1	1	87	96	12.5882
.........	chrM:11185-11389(+)$1	1	42	51	20.2352
.......))	chr3:12942518-12942826(-)$1	1	4	13	12.7843
......(((	chr4:145041542-145041773(-)$1	1	3	12	11.3137
.........	chrM:11167-11369(+)$1	1	60	69	20.2352
.........	chr1:12004404-12004699(+)$1	1	0	9	12.2941
.........	chrM:11056-11268(+)$1	1	171	180	20.2352
...(((.((	chrM:10533-10740(+)$1	1	20	29	14.4509
.........	chrM:7208-7449(+)$1	1	194	203	13.1764
.(((((...	chrM:6291-6503(+)$1	1	1	10	13.1764
.........	chrM:10987-11192(+)$1	1	72	81	14.3529
.........	chrM:11068-11271(+)$1	1	159	168	20.2352
(((...((.	chrM:9289-9516(+)$1	1	21	30	12.7843
)))))))))	chr19:10488886-10489241(-)$1	1	128	137	12.0000
....((((.	chrM:11226-11434(+)$1	1	1	10	20.2352
)))......	chrM:9744-9973(+)$1	1	13	22	17.3921
.........	chrM:11144-11347(+)$1	1	83	92	20.2352
.........	chrM:11890-12121(+)$1	1	205	214	11.8039
.........	chr19:41083788-41084110(+)$1	1	60	69	14.3529
.........	chrM:9241-9457(+)$1	1	69	78	12.7843
.((.(((((	chrM:10463-10668(+)$1	1	48	57	14.3529
.........	chrM:10995-11202(+)$1	1	64	73	14.3529
....))).)	chrM:10513-10722(+)$1	1	40	49	14.4509
)))))....	chr19:10488707-10489047(-)$1	1	243	252	12.3921
...((((..	chr6:31715102-31715374(+)$1	1	39	48	16.7058
.........	chrM:10983-11186(+)$1	1	76	85	14.3529
.((.(((((	chrM:10481-10693(+)$1	1	30	39	14.3529
.((.(((((	chrM:10493-10713(+)$1	1	18	27	14.3529
.........	chrM:11174-11378(+)$1	1	53	62	20.2352
......)))	chrM:11639-11862(+)$1	1	81	90	13.2745
....((((.	chr4:17804992-17805293(-)$1	1	7	16	12.0980
.........	chrM:11217-11426(+)$1	1	10	19	20.2352
.........	chrM:11178-11385(+)$1	1	49	58	20.2352
.(((.(((.	chr15:59373166-59373518(+)$1	1	4	13	12.3921
(((((((((	chrM:3787-4003(+)$1	1	106	115	13.8627
.........	chrM:11021-11256(+)$1	1	206	215	20.2352
....)))..	chr19:41938186-41938486(-)$1	1	201	210	16.7058
(((((((((	chrM:3710-3924(+)$1	1	183	192	13.8627
.........	chr10:50534929-50535212(+)$1	1	257	266	20.2352
((((((.((	chr17:38244355-38244596(+)$1	1	139	148	11.6078
((.......	chr8:91094784-91095120(-)$1	1	86	95	13.7647
.........	chrM:11193-11397(+)$1	1	34	43	20.2352
(((((((((	chrM:3746-3957(+)$1	1	147	156	13.8627
.....))))	chrM:3701-3906(+)$1	1	192	201	13.8627
......)))	chrM:11668-11871(+)$1	1	52	61	13.2745
(.(((((..	chr19:47993864-47994145(-)$1	1	12	21	20.2352
)))))))..	chr17:80218772-80219017(-)$1	1	212	221	11.8039
.........	chrM:11190-11393(+)$1	1	37	46	20.2352
.........	chrM:11170-11374(+)$1	1	57	66	20.2352

#PSSM
C : 0.86	U : 0.05	c : 0.05	A : 0.01	
U : 0.80	C : 0.11	u : 0.03	A : 0.01	a : 0.01	
C : 0.88	c : 0.03	G : 0.03	U : 0.01	g : 0.01	
C : 0.74	A : 0.17	c : 0.05	G : 0.01	
C : 0.90	c : 0.05	U : 0.03	
U : 0.84	A : 0.07	C : 0.01	a : 0.01	u : 0.01	c : 0.01	
U : 0.70	A : 0.13	u : 0.05	G : 0.05	a : 0.01	C : 0.01	
C : 0.82	c : 0.07	G : 0.03	A : 0.03	U : 0.01	
C : 0.60	U : 0.11	G : 0.11	A : 0.07	c : 0.05	a : 0.01	

#score	791.1176470588241
#seq	51
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_transcript_m1_run2.nuc.txt

#NT
GCUGGA	chr16:84215714-84216047(-)$1	333	215	221	18.0000
GCUGGA	chr12:102133185-102133455(+)$1	270	120	126	18.0000
gcugga	chr2:238487887-238488144(-)$1	257	50	56	18.0000
GCUGGA	chr14:23528460-23528707(-)$1	247	146	152	18.0000
GCUGGA	chr19:39437030-39437285(-)$1	255	135	141	18.0000
gcugga	chr7:64455105-64455397(-)$1	292	106	112	18.0000
GCUGGA	chr15:102008649-102008935(-)$1	286	240	246	18.0000
GCUGGA	chr17:80151737-80152036(-)$1	299	41	47	18.0000
GCUGGA	chr1:16952351-16952599(-)$1	248	98	104	18.0000
GCUGGA	chrX:133063349-133063602(-)$1	253	82	88	18.0000
GCUGGA	chr11:82868102-82868352(+)$1	250	107	113	18.0000
GCUGGA	chr17:70400717-70401008(-)$1	291	138	144	18.0000
GCUGGA	chr14:23537034-23537291(-)$1	257	116	122	18.0000
GCUGGA	chr8:144644104-144644394(+)$1	290	136	142	18.0000
GCUGGA	chr11:71724217-71724493(-)$1	276	96	102	18.0000
GCUGGA	chr18:55712305-55712557(+)$1	252	37	43	18.0000
GCUGGA	chr6:31857144-31857449(-)$1	305	251	257	18.0000
GCUGGA	chr12:50898885-50899166(+)$1	281	115	121	18.0000
GCUGGA	chr8:129044390-129044701(+)$1	311	146	152	18.0000
GCUGGA	chr6:32939471-32939692(+)$1	221	130	136	18.0000
GCUGGA	chr1:46073535-46073847(+)$1	312	122	128	18.0000
GCUGGA	chr20:36130273-36130682(-)$1	409	170	176	18.0000
GCUGGA	chr20:32247183-32247462(-)$1	279	71	77	18.0000
gcugga	chr6:2272764-2273030(+)$1	266	191	197	18.0000
GCUGGA	chr15:70361839-70362147(-)$1	308	165	171	18.0000
gcugga	chr4:1227661-1227938(-)$1	277	122	128	18.0000
GCUGGA	chr7:65551630-65551907(+)$1	277	136	142	18.0000
GCUGGA	chr6:167412764-167413112(+)$1	348	204	210	18.0000
GCUGGA	chr14:35747709-35748024(+)$1	315	116	122	18.0000
GCUGGA	chr11:66384000-66384290(+)$1	290	26	32	18.0000
GCUGGA	chr20:62586652-62586921(-)$1	269	109	115	18.0000
GCUGGA	chr3:171757960-171758217(+)$1	257	124	130	18.0000
GCUGGA	chr19:19105847-19106166(-)$1	319	153	159	18.0000
GCUGGA	chr20:3869933-3870211(+)$1	278	106	112	18.0000
gcugga	chr16:29923362-29923637(-)$1	275	56	62	18.0000
GCUGGA	chr8:144671646-144671934(-)$1	288	18	24	18.0000
GCUGGA	chr3:196693593-196693859(-)$1	266	134	140	18.0000
GCUGGA	chr9:100818961-100819252(+)$1	291	134	140	18.0000

#otherMatches

#Struct PSSM
fffff2	chr17:80534074-80534356(+)$1	282	126	132	18.0000
eee]cc	chr16:84215714-84216047(-)$1	333	215	221	18.0000
cc[bb[	chr12:102133185-102133455(+)$1	270	120	126	18.0000
======	chr2:238487887-238488144(-)$1	257	50	56	18.0000
ccc###	chr14:23528460-23528707(-)$1	247	146	152	18.0000
GGGG::	chr19:39437030-39437285(-)$1	255	135	141	18.0000
dddFFF	chr7:64455105-64455397(-)$1	292	106	112	18.0000
fffffh	chr15:102008649-102008935(-)$1	286	240	246	18.0000
bbbb[g	chr17:80151737-80152036(-)$1	299	41	47	18.0000
fff+++	chr1:16952351-16952599(-)$1	248	98	104	18.0000
DDDD::	chrX:133063349-133063602(-)$1	253	82	88	18.0000
bb[bb!	chr11:82868102-82868352(+)$1	250	107	113	18.0000
JJJJJ:	chr17:70400717-70401008(-)$1	291	138	144	18.0000
c]bbII	chr14:23537034-23537291(-)$1	257	116	122	18.0000
EEE}AC	chr8:144644104-144644394(+)$1	290	136	142	18.0000
!ccc[e	chr11:71724217-71724493(-)$1	276	96	102	18.0000
ppppa]	chr18:55712305-55712557(+)$1	252	37	43	18.0000
4hhhhh	chr6:31857144-31857449(-)$1	305	251	257	18.0000
eeeqqq	chr12:50898885-50899166(+)$1	281	115	121	18.0000
i22bb:	chr8:129044390-129044701(+)$1	311	146	152	18.0000
dd[ggg	chr6:32939471-32939692(+)$1	221	130	136	18.0000
eee"""	chr1:46073535-46073847(+)$1	312	122	128	18.0000
odddd7	chr20:36130273-36130682(-)$1	409	170	176	18.0000
b]ccc]	chr20:32247183-32247462(-)$1	279	71	77	18.0000
[ccc!!	chr6:2272764-2273030(+)$1	266	191	197	18.0000
bb]ddd	chr15:70361839-70362147(-)$1	308	165	171	18.0000
eee###	chr4:1227661-1227938(-)$1	277	122	128	18.0000
[cccoo	chr7:65551630-65551907(+)$1	277	136	142	18.0000
eeeenn	chr6:167412764-167413112(+)$1	348	204	210	18.0000
ggmmmm	chr14:35747709-35748024(+)$1	315	116	122	18.0000
fffff:	chr11:66384000-66384290(+)$1	290	26	32	18.0000
eannnn	chr20:62586652-62586921(-)$1	269	109	115	18.0000
dddrrr	chr3:171757960-171758217(+)$1	257	124	130	18.0000
DYYBB}	chr19:19105847-19106166(-)$1	319	153	159	18.0000
fffff]	chr20:3869933-3870211(+)$1	278	106	112	18.0000
ddddtt	chr16:29923362-29923637(-)$1	275	56	62	18.0000
DD::::	chr8:144671646-144671934(-)$1	288	18	24	18.0000
ddpppp	chr3:196693593-196693859(-)$1	266	134	140	18.0000
hhhh33	chr9:100818961-100819252(+)$1	291	134	140	18.0000

#DB
))))).	chr17:80534074-80534356(+)$1	1	126	132	18.0000
))).))	chr16:84215714-84216047(-)$1	1	215	221	18.0000
((.((.	chr12:102133185-102133455(+)$1	1	120	126	18.0000
((((((	chr2:238487887-238488144(-)$1	1	50	56	18.0000
(((...	chr14:23528460-23528707(-)$1	1	146	152	18.0000
((((..	chr19:39437030-39437285(-)$1	1	135	141	18.0000
))))))	chr7:64455105-64455397(-)$1	1	106	112	18.0000
))))))	chr15:102008649-102008935(-)$1	1	240	246	18.0000
))((.(	chr17:80151737-80152036(-)$1	1	41	47	18.0000
(((...	chr1:16952351-16952599(-)$1	1	98	104	18.0000
((((..	chrX:133063349-133063602(-)$1	1	82	88	18.0000
((.((.	chr11:82868102-82868352(+)$1	1	107	113	18.0000
(((((.	chr17:70400717-70401008(-)$1	1	138	144	18.0000
).))))	chr14:23537034-23537291(-)$1	1	116	122	18.0000
))).))	chr8:144644104-144644394(+)$1	1	136	142	18.0000
.(((.(	chr11:71724217-71724493(-)$1	1	96	102	18.0000
....).	chr18:55712305-55712557(+)$1	1	37	43	18.0000
.)))))	chr6:31857144-31857449(-)$1	1	251	257	18.0000
(((...	chr12:50898885-50899166(+)$1	1	115	121	18.0000
)..)).	chr8:129044390-129044701(+)$1	1	146	152	18.0000
((.(((	chr6:32939471-32939692(+)$1	1	130	136	18.0000
(((...	chr1:46073535-46073847(+)$1	1	122	128	18.0000
.)))).	chr20:36130273-36130682(-)$1	1	170	176	18.0000
).))).	chr20:32247183-32247462(-)$1	1	71	77	18.0000
.(((..	chr6:2272764-2273030(+)$1	1	191	197	18.0000
)).)))	chr15:70361839-70362147(-)$1	1	165	171	18.0000
(((...	chr4:1227661-1227938(-)$1	1	122	128	18.0000
.(((..	chr7:65551630-65551907(+)$1	1	136	142	18.0000
((((..	chr6:167412764-167413112(+)$1	1	204	210	18.0000
((....	chr14:35747709-35748024(+)$1	1	116	122	18.0000
))))).	chr11:66384000-66384290(+)$1	1	26	32	18.0000
((....	chr20:62586652-62586921(-)$1	1	109	115	18.0000
(((...	chr3:171757960-171758217(+)$1	1	124	130	18.0000
)..)).	chr19:19105847-19106166(-)$1	1	153	159	18.0000
))))).	chr20:3869933-3870211(+)$1	1	106	112	18.0000
((((..	chr16:29923362-29923637(-)$1	1	56	62	18.0000
((....	chr8:144671646-144671934(-)$1	1	18	24	18.0000
((....	chr3:196693593-196693859(-)$1	1	134	140	18.0000
))))..	chr9:100818961-100819252(+)$1	1	134	140	18.0000

#PSSM
G : 0.87	g : 0.12	
C : 0.87	c : 0.12	
U : 0.87	u : 0.12	
G : 0.87	g : 0.12	
G : 0.87	g : 0.12	
A : 0.87	a : 0.12	

#score	702.0000000000001
#seq	39
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_CDS_m1_run2.nuc.txt

#NT
AAGACGAUGGAGAGGAAG	chr1:150192890-150193164(-)$1	274	143	161	20.1904
Gggaggaggcgguggagg	chr4:39699762-39700068(+)$1	306	94	112	24.0000
aagaugaggaagacgagg	chr9:100773530-100773772(+)$1	242	28	46	24.2380
CUUGGGUGGCAGAGGAGG	chr11:62300880-62301181(-)$1	301	90	108	18.2857
aggaggaggcagaggaca	chr19:13054502-13054836(+)$1	334	106	124	24.2380
UGGUGGAGGCAGUGGAGG	chr10:70101631-70101873(+)$1	242	110	128	24.2380
uggaggagaccgaggagg	chr17:34171562-34171871(+)$1	309	153	171	25.9047
ggaaggaggaagaggagc	chr1:226349133-226349467(-)$1	334	76	94	22.0952
GAGAGGGCCCAGAGGUGG	chr11:62297232-62297514(-)$1	282	199	217	19.7142
aagaagaggaagaagagg	chr1:150195411-150195668(-)$1	257	139	157	25.1904
Cagaggaggaagaaggug	chr9:100777550-100777862(+)$1	312	92	110	22.0952
CCGAGGAGGCAGAGGAGG	chr2:232319808-232320076(-)$1	268	111	129	29.9523
AAGAAGAUGAAGAUGAGG	chr9:100774602-100774855(+)$1	253	122	140	21.6190
cagagaaagaacaggagg	chr14:39649913-39650173(+)$1	260	45	63	19.7142
GAGAGGGCCCAGAGGUGG	chr11:62297190-62297432(-)$1	242	117	135	19.7142
uggaggagaccgaggugg	chr17:34171748-34172015(+)$1	267	12	30	23.2857
AGGAGGUGUGAAAGGAGG	chr11:62284904-62285131(-)$1	227	117	135	18.7619
ugggggaaguagaggaag	chr1:90493039-90493329(+)$1	290	6	24	19.9523
UGGAGGAGACCGAGGUGG	chr17:34171875-34172138(+)$1	263	101	119	23.2857
Cagaggaggaagaaggug	chr9:100777545-100777750(+)$1	205	97	115	22.0952

#otherMatches

#Struct PSSM
::::::::::::::::::	chr14:39649800-39650031(+)$1	231	104	122	23.0476
!!abb[iiiiiiiii!!g	chr1:150192890-150193164(-)$1	274	143	161	20.1904
GGGGGGGKKA{BBKKCCC	chr4:39699762-39700068(+)$1	306	94	112	24.0000
^^^^^^^^^^^^^^^^^^	chr9:100773530-100773772(+)$1	242	28	46	24.2380
===wwwwwwwwwwwwww=	chr11:62300880-62301181(-)$1	301	90	108	18.2857
::::A}HHHHHHHH}CCC	chr19:13054502-13054836(+)$1	334	106	124	24.2380
a[dddd[cccpppppppc	chr10:70101631-70101873(+)$1	242	110	128	24.2380
ggg$$$$$ccc!!bb!!h	chr17:34171562-34171871(+)$1	309	153	171	25.9047
nndddd22eeeeedddd:	chr1:226349133-226349467(-)$1	334	76	94	22.0952
000ccc22dddd333ccc	chr11:62297232-62297514(-)$1	282	199	217	19.7142
::::::::::::::::bb	chr1:150195411-150195668(-)$1	257	139	157	25.1904
gggggg22bb333ccc22	chr9:100777550-100777862(+)$1	312	92	110	22.0952
H{CCC==========[bb	chr2:232319808-232320076(-)$1	268	111	129	29.9523
ggggg:::::FFFFFFEE	chr9:100774602-100774855(+)$1	253	122	140	21.6190
BBRRRRRRRRRDDDDKKB	chr14:39649913-39650173(+)$1	260	45	63	19.7142
000ccc22dddd333ccc	chr11:62297190-62297432(-)$1	242	117	135	19.7142
RRRRRRRRCCCKKCCCNN	chr17:34171748-34172015(+)$1	267	12	30	23.2857
33dddd]dddd::dddd!	chr11:62284904-62285131(-)$1	227	117	135	18.7619
:::::::::::::DDDD{	chr1:90493039-90493329(+)$1	290	6	24	19.9523
cccooooooccc]ccc]a	chr17:34171875-34172138(+)$1	263	101	119	23.2857
gggggg22bb333ccc22	chr9:100777545-100777750(+)$1	205	97	115	22.0952

#DB
..................	chr14:39649800-39650031(+)$1	1	104	122	23.0476
..(((.(((((((((..(	chr1:150192890-150193164(-)$1	1	143	161	20.1904
(((((((..(.((..(((	chr4:39699762-39700068(+)$1	1	94	112	24.0000
..................	chr9:100773530-100773772(+)$1	1	28	46	24.2380
(((..............)	chr11:62300880-62301181(-)$1	1	90	108	18.2857
....).)))))))).)))	chr19:13054502-13054836(+)$1	1	106	124	24.2380
(.((((.(((.......)	chr10:70101631-70101873(+)$1	1	110	128	24.2380
(((.....(((..((..(	chr17:34171562-34171871(+)$1	1	153	171	25.9047
..))))..))))))))).	chr1:226349133-226349467(-)$1	1	76	94	22.0952
...)))..))))...)))	chr11:62297232-62297514(-)$1	1	199	217	19.7142
................((	chr1:150195411-150195668(-)$1	1	139	157	25.1904
))))))..))...)))..	chr9:100777550-100777862(+)$1	1	92	110	22.0952
(.(((((((((((((.((	chr2:232319808-232320076(-)$1	1	111	129	29.9523
))))).....((((((((	chr9:100774602-100774855(+)$1	1	122	140	21.6190
((.........((((..(	chr14:39649913-39650173(+)$1	1	45	63	19.7142
...)))..))))...)))	chr11:62297190-62297432(-)$1	1	117	135	19.7142
........(((..(((..	chr17:34171748-34172015(+)$1	1	12	30	23.2857
..)))).))))..((((.	chr11:62284904-62285131(-)$1	1	117	135	18.7619
.............((((.	chr1:90493039-90493329(+)$1	1	6	24	19.9523
(((......))).))).)	chr17:34171875-34172138(+)$1	1	101	119	23.2857
))))))..))...)))..	chr9:100777545-100777750(+)$1	1	97	115	22.0952

#PSSM
u : 0.19	C : 0.19	A : 0.14	G : 0.14	a : 0.14	U : 0.09	g : 0.04	c : 0.04	
a : 0.28	g : 0.28	A : 0.19	G : 0.14	U : 0.04	C : 0.04	
g : 0.52	G : 0.38	U : 0.04	a : 0.04	
a : 0.52	A : 0.33	G : 0.04	U : 0.04	g : 0.04	
g : 0.47	G : 0.33	C : 0.04	u : 0.04	a : 0.04	A : 0.04	
g : 0.52	G : 0.42	a : 0.04	
a : 0.57	A : 0.23	U : 0.09	G : 0.09	
g : 0.42	G : 0.23	a : 0.14	U : 0.09	C : 0.09	
g : 0.47	G : 0.23	a : 0.09	C : 0.09	U : 0.04	A : 0.04	
a : 0.28	C : 0.28	c : 0.23	G : 0.09	A : 0.04	u : 0.04	
a : 0.42	A : 0.38	c : 0.09	g : 0.04	C : 0.04	
g : 0.52	G : 0.38	c : 0.04	A : 0.04	
a : 0.47	A : 0.38	g : 0.04	u : 0.04	U : 0.04	
G : 0.38	g : 0.33	a : 0.19	c : 0.04	U : 0.04	
g : 0.57	G : 0.42	
a : 0.42	A : 0.28	U : 0.14	g : 0.09	u : 0.04	
g : 0.38	G : 0.38	u : 0.09	A : 0.04	c : 0.04	a : 0.04	
g : 0.47	G : 0.42	a : 0.04	c : 0.04	

#score	471.61904761904765
#seq	21
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_UTR_m1_run1.nuc.txt

#NT
UAUGUUUAAUGAUGUGUGUUUGUGUUG	chr1:29486481-29486768(-)$1	287	99	126	18.1590
uuauuuuucauuuauuuauuuugguuu	chr10:121341124-121341404(-)$1	280	84	111	27.9318
UGUUUUUUUGUAUUUUUUUUUUUUUUU	chr2:48605751-48605991(+)$1	240	64	91	39.4090
AAUUUUUUAAGAGUGUUAuuuuguuuu	chr6:20493341-20493608(+)$1	267	79	106	22.2499
uuuguuuguuuguuuguguuuuuguuC	chr20:48250681-48250965(-)$1	284	219	246	29.6363
UUUUUGUGUGUGUUUUUGUUUUUAUUU	chr3:186303143-186303496(+)$1	353	118	145	35.3181
Auuuuuuuuuuuuuuuuuuuuuuguuu	chr1:169101083-169101331(+)$1	248	173	200	37.2499
UUUUUUUGUGUGUUUUUAUUGUUGUUU	chr1:198289317-198289603(+)$1	286	101	128	37.7045
uuauuguuguuauuauuauuguuauua	chr11:66112991-66113257(-)$1	266	82	109	22.0227
UUGCUUUUUUUUUUUUUUUUUUUCCUU	chr3:71007512-71007805(-)$1	293	0	27	28.0454
CAGAUUAGUGCCUUUUUAUUUUUGUAU	chr22:21307694-21307975(+)$1	281	216	243	18.2727
UGUUUAUGUUAAUUUUAAUUUCUGAUU	chrX:49857358-49857618(+)$1	260	93	120	23.6136
UCUUUCUAAACAUUUUUCUUUGGUUUU	chr14:36339932-36340205(+)$1	273	5	32	21.6818
AUUUUUAACAGAUUUGUACUUUUUUUA	chr5:175953631-175953862(-)$1	231	14	41	19.0681
UUAUUUUCAUUUGUUUUAUUUUCUUUU	chr22:32080781-32081058(-)$1	277	223	250	27.3636
uuuuuUUUUCAUUUCUUAUUUUCCUUU	chr4:41958380-41958627(+)$1	247	79	106	29.4090
UGUAUUACUGUAUUAUUAUUGUUGUUG	chr1:167385541-167385814(+)$1	273	63	90	20.8863
UUUUUUUGAGGAUUUUUAUUUUUGUUU	chr12:76423180-76423402(-)$1	222	56	83	40.3181
CUGUUUUUGGGGUUUUUAUGUUUUAUU	chr16:87439776-87440113(-)$1	337	144	171	23.2727
UUCCUGUGACUGUUUUUGUUUUGUUUU	chr11:130014428-130014661(+)$1	233	108	135	23.3863
UUGUUUUAUGAAUUUCUCUUUUUCUUC	chr2:32248891-32249183(-)$1	292	261	288	25.2045
UGUGUAUGUGUGUGUGUUGUUUUGUUU	chr8:57875519-57875780(-)$1	261	69	96	21.6818
AUUUUAUUAUGAUGUUUGUAUGUGUUU	chr13:41702490-41702763(-)$1	273	92	119	21.9090
UUUUUUUAUGGUGUUUAAUUUGUGGUU	chr8:103265948-103266213(-)$1	265	102	129	23.8409
UAUUUUUGUGUUUUCUUGUAAAUGUUU	chr1:235330841-235331092(-)$1	251	78	105	23.4999
UCUAAUUAAUACCUUUUAUAUUUGUUU	chr4:109588768-109589044(+)$1	276	199	226	18.4999
uuauuuuuuuuaauuguauuuuuGUUG	chr20:10619500-10619712(-)$1	212	42	69	28.6136
GUUUUGUUGGGGUUUUUGUUACUGUUU	chr8:133025063-133025349(+)$1	286	110	137	22.7045
UUUUCUUUUGUCUUGUGAUUUUUUUUU	chr10:93624810-93625074(+)$1	264	77	104	28.6136
guuuuuuucauauauauuuuuuauuuu	chr3:120048264-120048562(-)$1	298	76	103	22.5909
uauuuuaauguauuuugauuuaugauu	chr12:76423408-76423668(-)$1	260	58	85	24.1818
UUUUUGUGACuuuuuuuuuuuuuaaau	chr1:151376722-151377045(-)$1	323	14	41	25.0909
uguuuuguuggguuuuuuguuuuuuuu	chr11:102101301-102101570(+)$1	269	76	103	29.5227
UGCUUUUGAGGGUUUUUUGGUUUGUUU	chr1:9160414-9160712(-)$1	298	100	127	25.8863
UGUUUUUGCUUUUUGUUUGAUUUUUUU	chr7:94185998-94186248(+)$1	250	71	98	25.2045
UGUGUAUGUGUGUGUGUUGUUUUGUUU	chr8:57875580-57875821(-)$1	241	110	137	21.6818
UAUUUUUGUCUAUUCUUUAUUAUCUUA	chr6:163994321-163994568(+)$1	247	81	108	22.4772
UACUGUUGUGCCUUUUUAUUUUUCUAA	chr2:118866344-118866603(+)$1	259	21	48	20.0909
AUUUUUUUAACAUUUUCUUAUUUCUUA	chr5:108670443-108670705(-)$1	262	13	40	22.2499
UUAUUUUUAAAAUUCUAUCUUGUUUUU	chr2:73989259-73989526(-)$1	267	9	36	19.8636
UUUUUCCCAUUAUUUUUAUUUUAUUUU	chr5:32355419-32355654(-)$1	235	18	45	27.8181
UUUuuauuauuauuauuauuauuauua	chr6:7250971-7251231(+)$1	260	225	252	26.3409
UUUGUUUUCUGGUUUUUACAUUUUUGU	chrX:154005732-154006021(+)$1	289	242	269	23.0454

#otherMatches

#Struct PSSM
::::::IIIIIIIIIQQQQQQQQBB{C	chr16:3777272-3777575(-)$1	303	88	115	31.1136
ggggggmmmmggggggg==========	chr1:29486481-29486768(-)$1	287	99	126	18.1590
::::::::ffffffccc[ffffff!!d	chr10:121341124-121341404(-)$1	280	84	111	27.9318
ooooooffffff:::::::::HHHHHH	chr2:48605751-48605991(+)$1	240	64	91	39.4090
ttttttttteeeeedddd4444bb>>>	chr6:20493341-20493608(+)$1	267	79	106	22.2499
eeee:::::::::::::::========	chr20:48250681-48250965(-)$1	284	219	246	29.6363
i>>>>>>>>>>>>ffffff22======	chr3:186303143-186303496(+)$1	353	118	145	35.3181
::::::::::::::::::::::dddd$	chr1:169101083-169101331(+)$1	248	173	200	37.2499
666666ffffff]eeeee22ffffff2	chr1:198289317-198289603(+)$1	286	101	128	37.7045
ggg::ggggggg[bb[bbmmmmbb]bb	chr11:66112991-66113257(-)$1	266	82	109	22.0227
:::::::::::::::::::::::EEEE	chr3:71007512-71007805(-)$1	293	0	27	28.0454
EEEECCC}EEEEE|||||||EEEEEYY	chr22:21307694-21307975(+)$1	281	216	243	18.2727
dd[ccc[ddddmmmmdddd333ccc]d	chrX:49857358-49857618(+)$1	260	93	120	23.6136
GG{DDDDIIIIIIIIILLLIIIIIIII	chr14:36339932-36340205(+)$1	273	5	32	21.6818
ffffnnnnnffffffccceeeeeqqqq	chr5:175953631-175953862(-)$1	231	14	41	19.0681
e::::::::::::::::::::::::::	chr22:32080781-32081058(-)$1	277	223	250	27.3636
ffff22eeeee::::::::::::::::	chr4:41958380-41958627(+)$1	247	79	106	29.4090
ccc"""ggggggg^^^^^^^^^^^^^^	chr1:167385541-167385814(+)$1	273	63	90	20.8863
F::gggggggiiiiiiiii!!ccceee	chr12:76423180-76423402(-)$1	222	56	83	40.3181
:::JJJJJJJJJJJJJJJJ{EEEEE::	chr16:87439776-87440113(-)$1	337	144	171	23.2727
+++++a[cccbb$$$$$ccc^^^^^^^	chr11:130014428-130014661(+)$1	233	108	135	23.3863
JJJZZZBB@@@@@@@@@@@@@@HHHHH	chr2:32248891-32249183(-)$1	292	261	288	25.2045
fffff]a]ccc::ffffff[eeeee""	chr8:57875519-57875780(-)$1	261	69	96	21.6818
fff7777777gggggggeeeee[dddd	chr13:41702490-41702763(-)$1	273	92	119	21.9090
::IIIIIIIII{BBKKBBLLLFFFFFF	chr8:103265948-103266213(-)$1	265	102	129	23.8409
FFFFEEEEEMMMMEEEEENNNNNCCC{	chr1:235330841-235331092(-)$1	251	78	105	23.4999
ccc::ggggggg))))))))))ddddq	chr4:109588768-109589044(+)$1	276	199	226	18.4999
^^^^^^^^^ccc]dddd4444iiiiii	chr20:10619500-10619712(-)$1	212	42	69	28.6136
DPPPPPPPFFFFFF:::::ffffffrr	chr8:133025063-133025349(+)$1	286	110	137	22.7045
xxxxxxxxxxxxxxhhhhhhhh]bb33	chr10:93624810-93625074(+)$1	264	77	104	28.6136
iiiiiiii"""cccpppppppccc444	chr3:120048264-120048562(-)$1	298	76	103	22.5909
MMMMGGGGGGG{DDDDdddd[ddddmm	chr12:76423408-76423668(-)$1	260	58	85	24.1818
""dddd^^^^^^^^^^^^^^^^^^^^^	chr1:151376722-151377045(-)$1	323	14	41	25.0909
eee333ffffff>>>>>>>>>>>>>>>	chr11:102101301-102101570(+)$1	269	76	103	29.5227
DDD~~~~EEEEE::::::dddd####b	chr1:9160414-9160712(-)$1	298	100	127	25.8863
iii"""ggggggg[eeeeetttttttt	chr7:94185998-94186248(+)$1	250	71	98	25.2045
fffff]a]ccc::ffffff[eeeee""	chr8:57875580-57875821(-)$1	241	110	137	21.6818
444==========>>>>>>>>>>>>>>	chr6:163994321-163994568(+)$1	247	81	108	22.4772
Diiiiiiiii^^^^^^^^^^^^^^^^^	chr2:118866344-118866603(+)$1	259	21	48	20.0909
EEKKCCCKKCCC:::::::::::::ee	chr5:108670443-108670705(-)$1	262	13	40	22.2499
::::::::::::EEEEEOOOOOOGGGG	chr2:73989259-73989526(-)$1	267	9	36	19.8636
qqqqqqqqccc4444eeeee333eeee	chr5:32355419-32355654(-)$1	235	18	45	27.8181
DDZZZEEEEEZZZDDDD::::::::::	chr6:7250971-7251231(+)$1	260	225	252	26.3409
hhh::::::::::FFFFFFJJJJJJJJ	chrX:154005732-154006021(+)$1	289	242	269	23.0454

#DB
......(((((((((........((.(	chr16:3777272-3777575(-)$1	1	88	115	31.1136
((((((....)))))))((((((((((	chr1:29486481-29486768(-)$1	1	99	126	18.1590
........(((((((((.((((((..(	chr10:121341124-121341404(-)$1	1	84	111	27.9318
......)))))).........))))))	chr2:48605751-48605991(+)$1	1	64	91	39.4090
.........)))))))))....))...	chr6:20493341-20493608(+)$1	1	79	106	22.2499
))))...............((((((((	chr20:48250681-48250965(-)$1	1	219	246	29.6363
)............))))))..))))))	chr3:186303143-186303496(+)$1	1	118	145	35.3181
......................((((.	chr1:169101083-169101331(+)$1	1	173	200	37.2499
......)))))).)))))..)))))).	chr1:198289317-198289603(+)$1	1	101	128	37.7045
)))..(((((((.((.((....)).))	chr11:66112991-66113257(-)$1	1	82	109	22.0227
.......................((((	chr3:71007512-71007805(-)$1	1	0	27	28.0454
))))))).))))).......)))))..	chr22:21307694-21307975(+)$1	1	216	243	18.2727
((.(((.((((....))))...))).)	chrX:49857358-49857618(+)$1	1	93	120	23.6136
((.(((((((((((((...((((((((	chr14:36339932-36340205(+)$1	1	5	32	21.6818
((((.....))))))((((((((....	chr5:175953631-175953862(-)$1	1	14	41	19.0681
)..........................	chr22:32080781-32081058(-)$1	1	223	250	27.3636
))))..)))))................	chr4:41958380-41958627(+)$1	1	79	106	29.4090
(((...(((((((..............	chr1:167385541-167385814(+)$1	1	63	90	20.8863
(..((((((((((((((((..((((((	chr12:76423180-76423402(-)$1	1	56	83	40.3181
...((((((((((((((((.(((((..	chr16:87439776-87440113(-)$1	1	144	171	23.2727
.....(.(((((.....(((.......	chr11:130014428-130014661(+)$1	1	108	135	23.3863
)))...))..............)))))	chr2:32248891-32249183(-)$1	1	261	288	25.2045
))))).).)))..((((((.(((((..	chr8:57875519-57875780(-)$1	1	69	96	21.6818
))).......)))))))(((((.((((	chr13:41702490-41702763(-)$1	1	92	119	21.9090
..(((((((((.((..((...((((((	chr8:103265948-103266213(-)$1	1	102	129	23.8409
(((((((((....(((((.....(((.	chr1:235330841-235331092(-)$1	1	78	105	23.4999
)))..(((((((..........((((.	chr4:109588768-109589044(+)$1	1	199	226	18.4999
.........))).))))....))))))	chr20:10619500-10619712(-)$1	1	42	69	28.6136
(.......((((((.....((((((..	chr8:133025063-133025349(+)$1	1	110	137	22.7045
..............)))))))).))..	chr10:93624810-93625074(+)$1	1	77	104	28.6136
((((((((...(((.......)))...	chr3:120048264-120048562(-)$1	1	76	103	22.5909
....(((((((.((((((((.((((..	chr12:76423408-76423668(-)$1	1	58	85	24.1818
..((((.....................	chr1:151376722-151377045(-)$1	1	14	41	25.0909
)))...))))))...............	chr11:102101301-102101570(+)$1	1	76	103	29.5227
)))....)))))......((((....(	chr1:9160414-9160712(-)$1	1	100	127	25.8863
(((...(((((((.(((((........	chr7:94185998-94186248(+)$1	1	71	98	25.2045
))))).).)))..((((((.(((((..	chr8:57875580-57875821(-)$1	1	110	137	21.6818
...))))))))))..............	chr6:163994321-163994568(+)$1	1	81	108	22.4772
((((((((((.................	chr2:118866344-118866603(+)$1	1	21	48	20.0909
((..(((..(((.............((	chr5:108670443-108670705(-)$1	1	13	40	22.2499
............(((((......((((	chr2:73989259-73989526(-)$1	1	9	36	19.8636
........)))....)))))...))))	chr5:32355419-32355654(-)$1	1	18	45	27.8181
))...)))))...))))..........	chr6:7250971-7251231(+)$1	1	225	252	26.3409
)))..........))))))))))))))	chrX:154005732-154006021(+)$1	1	242	269	23.0454

#PSSM
U : 0.63	u : 0.15	A : 0.11	C : 0.04	G : 0.02	g : 0.02	
U : 0.43	u : 0.15	G : 0.15	A : 0.13	C : 0.06	a : 0.02	g : 0.02	
U : 0.59	u : 0.13	G : 0.09	a : 0.06	C : 0.06	A : 0.04	
U : 0.56	u : 0.20	G : 0.09	A : 0.06	C : 0.04	g : 0.02	
U : 0.70	u : 0.22	A : 0.02	C : 0.02	G : 0.02	
U : 0.56	u : 0.15	G : 0.09	A : 0.09	C : 0.04	g : 0.02	a : 0.02	
U : 0.70	u : 0.15	A : 0.06	a : 0.02	g : 0.02	C : 0.02	
G : 0.31	U : 0.27	u : 0.15	A : 0.13	C : 0.06	g : 0.02	a : 0.02	
U : 0.38	A : 0.29	u : 0.11	C : 0.06	c : 0.04	G : 0.04	g : 0.02	a : 0.02	
G : 0.36	U : 0.22	A : 0.11	u : 0.11	C : 0.09	a : 0.04	g : 0.04	
U : 0.31	G : 0.22	u : 0.20	C : 0.11	A : 0.11	g : 0.02	
A : 0.31	G : 0.20	U : 0.13	C : 0.11	a : 0.11	u : 0.06	g : 0.04	
U : 0.65	u : 0.20	G : 0.09	C : 0.02	a : 0.02	
U : 0.68	u : 0.18	G : 0.09	a : 0.04	
U : 0.59	u : 0.18	C : 0.09	G : 0.06	a : 0.04	A : 0.02	
U : 0.65	u : 0.15	G : 0.09	g : 0.04	C : 0.02	a : 0.02	
U : 0.65	u : 0.20	A : 0.06	G : 0.02	g : 0.02	C : 0.02	
A : 0.36	U : 0.20	G : 0.15	a : 0.11	u : 0.09	C : 0.04	g : 0.02	
U : 0.56	u : 0.22	G : 0.09	C : 0.06	g : 0.02	A : 0.02	
U : 0.56	u : 0.25	A : 0.13	G : 0.04	
U : 0.65	u : 0.20	G : 0.04	A : 0.04	g : 0.02	a : 0.02	
U : 0.54	u : 0.22	G : 0.11	C : 0.04	A : 0.04	a : 0.02	
U : 0.63	u : 0.18	g : 0.04	G : 0.04	C : 0.04	a : 0.02	A : 0.02	
G : 0.36	U : 0.25	C : 0.13	g : 0.09	u : 0.06	a : 0.06	A : 0.02	
U : 0.68	u : 0.18	A : 0.04	a : 0.04	C : 0.02	G : 0.02	
U : 0.70	u : 0.20	A : 0.04	a : 0.02	G : 0.02	
U : 0.59	u : 0.15	A : 0.09	G : 0.06	C : 0.04	a : 0.04	

#score	1126.7272727272718
#seq	44
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_UTR_m2_run1.nuc.txt

#NT
AGGAUGUUCGGCGGCCCGGGCACCGCGAGCCGGCCGAGCUCCAGCCGGAGCUACGUGACUACGUCCACCCGCACCUACAGCCUGGGCAGCGCGCUGCGCCCCAGCACCAGCCGCAGC	chr10:17271230-17271578(+)$1	348	227	344	152.6666
CCGAUGUCGCCCGCGCCCCGCUAGGCUGAGCCUCGGGUCGGGCGAGGAGCCGCCGCAGCCGCCGCCGCCCGAGCCGCGGGCAGGAGCCUCGGGAgccgccgccgccgccgccgccgc	chrX:152953588-152953898(+)$1	310	43	160	155.9999

#otherMatches

#Struct PSSM
dd[dddd[bb!!eeeee[cccooooooccc]eeeee]bb22dddddddd22ccc]ffffff]ccc]a]a]ccc333eeeee]eeeee]a333bb]ccccccaccc[bb[ccc####b	chr20:57466610-57466874(+)$1	264	50	167	164.3333
[ccc[gggggggcccaccclllccc]a]ccc]gggggggccc]bb]dddd22ccc]ccc]ccc333ccc::::::::::HHHHHHHH}CCC:ffffff$$$$$bbmmmmbbffffff	chr10:17271230-17271578(+)$1	348	227	344	152.6666
ammmma]hhhhhhhh22a]bb22ccc:::BBKKDDDD{FFFFFFFFFFFF:bb[bbmmmmbb]bb:eeeee[bbggggggg[bb[a"""dddd[cccdddd!!bb[bbmmmmbb]bb	chrX:152953588-152953898(+)$1	310	43	160	155.9999

#DB
((.((((.((..(((((.(((......))).))))).))..))))))))..))).)))))).))).).).)))...))))).))))).)...)).)))(((((((.((.(((....(	chr20:57466610-57466874(+)$1	1	50	167	164.3333
.(((.((((((((((((((...))).).))).)))))))))).)).))))..))).))).)))...)))..........)))))))).))).((((((.....((....))))))))	chr10:17271230-17271578(+)$1	1	227	344	152.6666
(....).))))))))..).))..)))...((..((((.((((((((((((.((.((....)).)).(((((.(((((((((.((.(...((((.(((((((..((.((....)).))	chrX:152953588-152953898(+)$1	1	43	160	155.9999

#PSSM
g : 0.33	A : 0.33	C : 0.33	
g : 0.33	G : 0.33	C : 0.33	
G : 0.66	a : 0.33	
A : 0.66	g : 0.33	
U : 0.66	c : 0.33	
G : 0.66	c : 0.33	
U : 0.66	g : 0.33	
a : 0.33	U : 0.33	C : 0.33	
g : 0.33	C : 0.33	G : 0.33	
c : 0.33	G : 0.33	C : 0.33	
c : 0.33	G : 0.33	C : 0.33	
C : 0.66	c : 0.33	
G : 0.66	g : 0.33	
c : 0.33	G : 0.33	C : 0.33	
g : 0.33	C : 0.33	G : 0.33	
C : 0.66	c : 0.33	
C : 0.66	c : 0.33	
c : 0.33	G : 0.33	C : 0.33	
g : 0.33	G : 0.33	C : 0.33	
G : 0.66	g : 0.33	
C : 0.66	c : 0.33	
c : 0.33	A : 0.33	U : 0.33	
c : 0.33	C : 0.33	A : 0.33	
g : 0.33	C : 0.33	G : 0.33	
G : 0.66	c : 0.33	
C : 0.66	c : 0.33	
c : 0.33	G : 0.33	U : 0.33	
g : 0.33	A : 0.33	G : 0.33	
c : 0.33	G : 0.33	A : 0.33	
c : 0.33	C : 0.33	G : 0.33	
C : 0.66	c : 0.33	
g : 0.33	G : 0.33	C : 0.33	
g : 0.33	G : 0.33	U : 0.33	
C : 0.66	c : 0.33	
g : 0.33	C : 0.33	G : 0.33	
G : 0.66	c : 0.33	
u : 0.33	A : 0.33	G : 0.33	
g : 0.33	G : 0.33	U : 0.33	
C : 0.66	c : 0.33	
c : 0.33	U : 0.33	G : 0.33	
c : 0.33	C : 0.33	G : 0.33	
c : 0.33	C : 0.33	G : 0.33	
g : 0.33	A : 0.33	C : 0.33	
G : 0.66	g : 0.33	
c : 0.33	C : 0.33	A : 0.33	
c : 0.33	C : 0.33	G : 0.33	
G : 0.66	c : 0.33	
u : 0.33	G : 0.33	A : 0.33	
c : 0.33	A : 0.33	G : 0.33	
c : 0.33	G : 0.33	C : 0.33	
C : 0.66	c : 0.33	
g : 0.33	U : 0.33	G : 0.33	
g : 0.33	A : 0.33	C : 0.33	
C : 0.66	c : 0.33	
G : 0.66	c : 0.33	
c : 0.33	U : 0.33	C : 0.33	
G : 0.66	A : 0.33	
C : 0.33	A : 0.33	G : 0.33	
C : 0.66	G : 0.33	
U : 0.66	C : 0.33	
G : 0.66	A : 0.33	
C : 0.66	A : 0.33	
G : 0.66	C : 0.33	
G : 0.66	U : 0.33	
C : 1.00	
C : 1.00	
G : 0.66	A : 0.33	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 0.66	A : 0.33	
G : 0.66	A : 0.33	
C : 1.00	
C : 0.66	c : 0.33	
c : 0.33	U : 0.33	G : 0.33	
g : 0.33	A : 0.33	C : 0.33	
c : 0.33	C : 0.33	G : 0.33	
c : 0.33	A : 0.33	G : 0.33	
G : 0.66	g : 0.33	
C : 0.66	c : 0.33	
c : 0.33	C : 0.33	A : 0.33	
g : 0.33	U : 0.33	G : 0.33	
G : 0.66	c : 0.33	
c : 0.33	G : 0.33	A : 0.33	
G : 0.66	g : 0.33	
C : 0.66	c : 0.33	
a : 0.33	A : 0.33	C : 0.33	
g : 0.33	G : 0.33	U : 0.33	
C : 0.66	c : 0.33	
G : 0.66	c : 0.33	
c : 0.33	C : 0.33	G : 0.33	
G : 0.66	g : 0.33	
g : 0.33	C : 0.33	A : 0.33	
c : 0.33	U : 0.33	g : 0.33	
c : 0.66	G : 0.33	
g : 0.33	C : 0.33	c : 0.33	
c : 0.33	G : 0.33	g : 0.33	
g : 0.33	C : 0.33	c : 0.33	
c : 0.66	C : 0.33	
c : 0.33	C : 0.33	g : 0.33	
c : 0.66	C : 0.33	
c : 0.66	A : 0.33	
g : 0.66	G : 0.33	
c : 0.66	C : 0.33	
c : 0.66	A : 0.33	
g : 0.66	C : 0.33	
c : 0.66	C : 0.33	
c : 0.66	A : 0.33	
g : 0.66	G : 0.33	
c : 0.66	C : 0.33	
c : 0.66	C : 0.33	
g : 0.66	G : 0.33	
c : 0.66	C : 0.33	
c : 0.66	A : 0.33	
g : 0.66	G : 0.33	
c : 0.66	C : 0.33	

#score	472.9999999999999
#seq	3
#width	117
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_transcript_m3_run2.nuc.txt

#NT
gugugugugugc	chr19:1496807-1497106(+)$1	299	73	85	29.2653
gugugugugugc	chr13:113986401-113986663(-)$1	262	55	67	29.2653
gugugugugugu	chr21:46286038-46286287(-)$1	249	107	119	29.6734
GUGAGUGUGUGC	chr16:12354845-12355105(+)$1	260	46	58	24.6734
gugugugugugg	chr22:20110249-20110469(+)$1	220	26	38	29.2653
gugugugugagu	chr12:53577784-53578127(+)$1	343	192	204	25.0816
gugugucugugg	chr1:247471556-247471805(-)$1	249	64	76	24.5714
GUGUGUGGGUGG	chr12:125023820-125024119(-)$1	299	220	232	24.9795
gugugugagugc	chr9:139247262-139247534(+)$1	272	88	100	25.0816
gugugugugaga	chr6:15300944-15301188(+)$1	244	1	13	23.9591
gugugugagugu	chr19:39648446-39648714(+)$1	268	213	225	25.4897
gugugugugugu	chr20:62652822-62653114(+)$1	292	80	92	29.6734
gugagugugugg	chr8:41531691-41531955(-)$1	264	91	103	24.6734
gugugugugugc	chr20:62363544-62363798(+)$1	254	96	108	29.2653
gugucugugugc	chr1:885447-885692(-)$1	245	40	52	24.6734
guaugugugugc	chr1:2303474-2303733(-)$1	259	48	60	24.4693
guguguguguug	chr5:95088803-95089113(+)$1	310	113	125	24.6734
gugucugugugu	chr16:58195268-58195564(-)$1	296	130	142	25.0816
cuguguguguga	chr21:44268674-44268907(-)$1	233	148	160	24.3673
GUGUGUGUUUGC	chr19:10562260-10562509(+)$1	249	96	108	24.6734
guguguguguUG	chr15:98298717-98298938(-)$1	221	76	88	24.6734
guguguaugugg	chr22:20110441-20110702(+)$1	261	167	179	24.5714
cugugugugugc	chr1:1276651-1276937(-)$1	286	102	114	25.0816
gugugugugugu	chrX:48799525-48799781(-)$1	256	240	252	29.6734
GUGUGUGUGUGG	chr21:47823004-47823257(+)$1	253	119	131	29.2653
gugugugugugu	chr12:124916473-124916747(-)$1	274	105	117	29.6734
gugugugugugu	chr20:62653272-62653529(+)$1	257	25	37	29.6734
GUGUGUGUCUGC	chr7:1527992-1528266(-)$1	274	88	100	24.7755
gugugugucugc	chr11:69172953-69173223(+)$1	270	4	16	24.7755
cugugugugugc	chr21:36337370-36337635(-)$1	265	125	137	25.0816
gugugugggugu	chr11:47379780-47380014(-)$1	234	94	106	25.3877
gugugugugugG	chr10:80935376-80935646(+)$1	270	0	12	29.2653
gugugugugugu	chr3:194833058-194833331(-)$1	273	6	18	29.6734
GUGUGUGUGUGU	chr3:129113659-129113918(-)$1	259	98	110	29.6734
gugugugaguga	chr3:14457490-14457804(+)$1	314	93	105	24.3673
GUGUGUGUGUGU	chr5:139032514-139032837(+)$1	323	143	155	29.6734
gugugugugugu	chr9:96381091-96381374(+)$1	283	26	38	29.6734
gugugugugugG	chr1:5928631-5928902(-)$1	271	122	134	29.2653
GAGUGUGUGUGG	chr5:180236596-180236920(-)$1	324	85	97	24.6734
gcgugugugugu	chr11:47378254-47378497(-)$1	243	51	63	25.0816
GUGUGCGUGUGU	chr7:1978862-1979105(-)$1	243	92	104	25.1836
ggguGUGUGUGA	chr16:88959071-88959289(-)$1	218	148	160	23.9591
gugugggugugg	chr2:97559967-97560207(-)$1	240	79	91	24.8775
gugugagugugg	chr20:62901214-62901470(+)$1	256	53	65	24.7755
CUGUGUGUGUGA	chr19:42787242-42787510(+)$1	268	89	101	24.3673
gugugugugugu	chr1:44063091-44063381(+)$1	290	101	113	29.6734
gugugugugugA	chr19:28915018-28915234(-)$1	216	0	12	28.5510
gugugugugugu	chr20:62652999-62653265(+)$1	266	88	100	29.6734

#otherMatches

#Struct PSSM
hhhhhh[a[eee	chr20:62901522-62901819(+)$1	297	2	14	24.8775
=[bb"""eeeee	chr19:1496807-1497106(+)$1	299	73	85	29.2653
ddd####=====	chr13:113986401-113986663(-)$1	262	55	67	29.2653
ccc####a[bb[	chr21:46286038-46286287(-)$1	249	107	119	29.6734
fffff####ddd	chr16:12354845-12355105(+)$1	260	46	58	24.6734
::::::::::::	chr22:20110249-20110469(+)$1	220	26	38	29.2653
}CCCZZZCCCYY	chr12:53577784-53578127(+)$1	343	192	204	25.0816
f:FFFFFF{AFF	chr1:247471556-247471805(-)$1	249	64	76	24.5714
4a]ggggggg22	chr12:125023820-125024119(-)$1	299	220	232	24.9795
]a22hhhhhhhh	chr9:139247262-139247534(+)$1	272	88	100	25.0816
:A{CCC{A{CCC	chr6:15300944-15301188(+)$1	244	1	13	23.9591
========22ad	chr19:39648446-39648714(+)$1	268	213	225	25.4897
obb]a22dddd]	chr20:62652822-62653114(+)$1	292	80	92	29.6734
}DDDDYYCCC==	chr8:41531691-41531955(-)$1	264	91	103	24.6734
ffffooooooff	chr20:62363544-62363798(+)$1	254	96	108	29.2653
====[iiiiiii	chr1:885447-885692(-)$1	245	40	52	24.6734
==========dd	chr1:2303474-2303733(-)$1	259	48	60	24.4693
7777777ccc]e	chr5:95088803-95089113(+)$1	310	113	125	24.6734
!!a[annnnna]	chr16:58195268-58195564(-)$1	296	130	142	25.0816
hh0000000000	chr21:44268674-44268907(-)$1	233	148	160	24.3673
c[a[eeeee[dd	chr19:10562260-10562509(+)$1	249	96	108	24.6734
]a]a]a]dddd3	chr15:98298717-98298938(-)$1	221	76	88	24.6734
$$$$$hhhhhhh	chr22:20110441-20110702(+)$1	261	167	179	24.5714
EEEEEKKFFFFF	chr1:1276651-1276937(-)$1	286	102	114	25.0816
::::::::::::	chrX:48799525-48799781(-)$1	256	240	252	29.6734
d[hhhhhhhh[c	chr21:47823004-47823257(+)$1	253	119	131	29.2653
boooooobb]cc	chr12:124916473-124916747(-)$1	274	105	117	29.6734
========oooo	chr20:62653272-62653529(+)$1	257	25	37	29.6734
b[bb!!ffffff	chr7:1527992-1528266(-)$1	274	88	100	24.7755
FF:=========	chr11:69172953-69173223(+)$1	270	4	16	24.7755
bnnnnnbb]ahh	chr21:36337370-36337635(-)$1	265	125	137	25.0816
ee"""bb[gggg	chr11:47379780-47380014(-)$1	234	94	106	25.3877
A{CCC{IIIIII	chr10:80935376-80935646(+)$1	270	0	12	29.2653
======oooooo	chr3:194833058-194833331(-)$1	273	6	18	29.6734
HH}CCC}CCCee	chr3:129113659-129113918(-)$1	259	98	110	29.6734
ff####bb[fff	chr3:14457490-14457804(+)$1	314	93	105	24.3673
[bb[a[eeeee[	chr5:139032514-139032837(+)$1	323	143	155	29.6734
CC{CCC::::::	chr9:96381091-96381374(+)$1	283	26	38	29.6734
======$$$$$=	chr1:5928631-5928902(-)$1	271	122	134	29.2653
DD{EEEEEgggg	chr5:180236596-180236920(-)$1	324	85	97	24.6734
FFFFFFbb"""e	chr11:47378254-47378497(-)$1	243	51	63	25.0816
ffffffoooooo	chr7:1978862-1979105(-)$1	243	92	104	25.1836
GGGGGGG}BBZZ	chr16:88959071-88959289(-)$1	218	148	160	23.9591
qqqeeeee]a::	chr2:97559967-97560207(-)$1	240	79	91	24.8775
bb[dddd=====	chr20:62901214-62901470(+)$1	256	53	65	24.7755
bb[cccnnnnnc	chr19:42787242-42787510(+)$1	268	89	101	24.3673
::::::::::::	chr1:44063091-44063381(+)$1	290	101	113	29.6734
::::::::dddd	chr19:28915018-28915234(-)$1	216	0	12	28.5510
============	chr20:62652999-62653265(+)$1	266	88	100	29.6734

#DB
((((((.(.(((	chr20:62901522-62901819(+)$1	1	2	14	24.8775
(.((...(((((	chr19:1496807-1497106(+)$1	1	73	85	29.2653
(((....(((((	chr13:113986401-113986663(-)$1	1	55	67	29.2653
(((....(.((.	chr21:46286038-46286287(-)$1	1	107	119	29.6734
(((((....(((	chr16:12354845-12355105(+)$1	1	46	58	24.6734
............	chr22:20110249-20110469(+)$1	1	26	38	29.2653
.)))...)))..	chr12:53577784-53578127(+)$1	1	192	204	25.0816
).((((((.(((	chr1:247471556-247471805(-)$1	1	64	76	24.5714
.).)))))))..	chr12:125023820-125024119(-)$1	1	220	232	24.9795
.)..))))))))	chr9:139247262-139247534(+)$1	1	88	100	25.0816
.(.(((.(.(((	chr6:15300944-15301188(+)$1	1	1	13	23.9591
))))))))..))	chr19:39648446-39648714(+)$1	1	213	225	25.4897
.)).)..)))).	chr20:62652822-62653114(+)$1	1	80	92	29.6734
.))))..)))((	chr8:41531691-41531955(-)$1	1	91	103	24.6734
((((......))	chr20:62363544-62363798(+)$1	1	96	108	29.2653
((((.(((((((	chr1:885447-885692(-)$1	1	40	52	24.6734
))))))))))))	chr1:2303474-2303733(-)$1	1	48	60	24.4693
.......))).)	chr5:95088803-95089113(+)$1	1	113	125	24.6734
..(.(.....).	chr16:58195268-58195564(-)$1	1	130	142	25.0816
))..........	chr21:44268674-44268907(-)$1	1	148	160	24.3673
(.(.(((((.((	chr19:10562260-10562509(+)$1	1	96	108	24.6734
.).).).)))).	chr15:98298717-98298938(-)$1	1	76	88	24.6734
.....(((((((	chr22:20110441-20110702(+)$1	1	167	179	24.5714
(((((..(((((	chr1:1276651-1276937(-)$1	1	102	114	25.0816
............	chrX:48799525-48799781(-)$1	1	240	252	29.6734
(.((((((((.(	chr21:47823004-47823257(+)$1	1	119	131	29.2653
(......)).))	chr12:124916473-124916747(-)$1	1	105	117	29.6734
((((((((....	chr20:62653272-62653529(+)$1	1	25	37	29.6734
(.((..((((((	chr7:1527992-1528266(-)$1	1	88	100	24.7755
((.(((((((((	chr11:69172953-69173223(+)$1	1	4	16	24.7755
(.....)).)))	chr21:36337370-36337635(-)$1	1	125	137	25.0816
((...((.((((	chr11:47379780-47380014(-)$1	1	94	106	25.3877
(.(((.((((((	chr10:80935376-80935646(+)$1	1	0	12	29.2653
((((((......	chr3:194833058-194833331(-)$1	1	6	18	29.6734
)).))).)))((	chr3:129113659-129113918(-)$1	1	98	110	29.6734
((....((.(((	chr3:14457490-14457804(+)$1	1	93	105	24.3673
.((.(.(((((.	chr5:139032514-139032837(+)$1	1	143	155	29.6734
((.(((......	chr9:96381091-96381374(+)$1	1	26	38	29.6734
((((((.....(	chr1:5928631-5928902(-)$1	1	122	134	29.2653
((.(((((((((	chr5:180236596-180236920(-)$1	1	85	97	24.6734
((((((((...(	chr11:47378254-47378497(-)$1	1	51	63	25.0816
((((((......	chr7:1978862-1979105(-)$1	1	92	104	25.1836
))))))).))..	chr16:88959071-88959289(-)$1	1	148	160	23.9591
...))))).)..	chr2:97559967-97560207(-)$1	1	79	91	24.8775
((.(((((((((	chr20:62901214-62901470(+)$1	1	53	65	24.7755
((.(((.....)	chr19:42787242-42787510(+)$1	1	89	101	24.3673
............	chr1:44063091-44063381(+)$1	1	101	113	29.6734
........((((	chr19:28915018-28915234(-)$1	1	0	12	28.5510
((((((((((((	chr20:62652999-62653265(+)$1	1	88	100	29.6734

#PSSM
g : 0.73	G : 0.18	c : 0.06	C : 0.02	
u : 0.75	U : 0.18	A : 0.02	c : 0.02	g : 0.02	
g : 0.77	G : 0.20	a : 0.02	
u : 0.77	U : 0.18	A : 0.02	a : 0.02	
g : 0.73	G : 0.22	c : 0.04	
u : 0.71	U : 0.20	g : 0.04	C : 0.02	a : 0.02	
g : 0.73	G : 0.22	c : 0.02	a : 0.02	
u : 0.69	U : 0.20	a : 0.06	G : 0.02	g : 0.02	
g : 0.75	G : 0.18	U : 0.02	C : 0.02	c : 0.02	
u : 0.73	U : 0.22	a : 0.04	
g : 0.73	G : 0.22	u : 0.02	U : 0.02	
u : 0.28	c : 0.20	g : 0.14	G : 0.12	C : 0.06	a : 0.06	U : 0.06	A : 0.06	

#score	1302.775510204082
#seq	49
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_transcript_m1_run2.nuc.txt

#NT
GAAGA	chrX:39922024-39922290(-)$1	266	102	107	14.9999
GAAGA	chr10:70545840-70546076(+)$1	236	63	68	14.9999
GAAGA	chr2:131883225-131883586(+)$1	361	119	124	14.9999
GAAGA	chr11:61915884-61916100(+)$1	216	129	134	14.9999
GAAGA	chr21:34143727-34144149(-)$1	422	218	223	14.9999
GAAGA	chr2:55749144-55749403(+)$1	259	104	109	14.9999
GAAGA	chr1:93306091-93306296(+)$1	205	99	104	14.9999
GAAGA	chr16:11971213-11971496(-)$1	283	152	157	14.9999
GAAGA	chrX:153994403-153994695(+)$1	292	171	176	14.9999
GAAGA	chrX:129546326-129546626(+)$1	300	252	257	14.9999
GAAGA	chr10:79796911-79797115(+)$1	204	54	59	14.9999
gaaga	chr12:104341087-104341305(+)$1	218	4	9	14.9999
GAAGA	chr5:145524086-145524326(-)$1	240	3	8	14.9999
GAAGA	chr10:120809348-120809597(-)$1	249	53	58	14.9999
GAAGA	chr12:76442910-76443127(-)$1	217	103	108	14.9999
GAAGA	chr19:39949419-39949628(+)$1	209	67	72	14.9999
GAAGA	chr1:24976464-24976677(+)$1	213	36	41	14.9999
GAAGA	chr14:21679497-21679750(-)$1	253	32	37	14.9999
GAAGA	chr12:56999570-56999809(-)$1	239	156	161	14.9999
GAAGA	chr17:4575112-4575392(-)$1	280	23	28	14.9999
GAAGA	chr1:35653487-35653708(-)$1	221	37	42	14.9999
GAAGA	chr21:45107295-45107519(+)$1	224	124	129	14.9999
GAAGA	chr9:138836944-138837168(-)$1	224	115	120	14.9999
GAAGA	chr16:30779479-30779721(+)$1	242	123	128	14.9999
GAAGA	chr17:79637243-79637549(+)$1	306	286	291	14.9999
gaaga	chr3:51440595-51440889(-)$1	294	60	65	14.9999
GAAGA	chr4:1729709-1729956(+)$1	247	26	31	14.9999
GAAGA	chr1:150192894-150193159(-)$1	265	95	100	14.9999
GAAGA	chr19:49377278-49377545(+)$1	267	136	141	14.9999
GAAGA	chr4:77951944-77952224(+)$1	280	30	35	14.9999
GAAGA	chr1:27271852-27272061(+)$1	209	87	92	14.9999
GAAGA	chr1:15736379-15736698(+)$1	319	13	18	14.9999
GAAGA	chr2:131976037-131976314(+)$1	277	99	104	14.9999
GAAGA	chr12:57106471-57106688(-)$1	217	82	87	14.9999
GAAGA	chr1:27267862-27268136(+)$1	274	126	131	14.9999
GAAGA	chr6:33287293-33287553(-)$1	260	59	64	14.9999
GAAGA	chr10:102112022-102112291(+)$1	269	4	9	14.9999
GAAGA	chr15:72491733-72492002(-)$1	269	137	142	14.9999
GAAGA	chr19:11113720-11113932(+)$1	212	46	51	14.9999
GAAGA	chr17:7480827-7481123(+)$1	296	160	165	14.9999
GAAGA	chr5:132203093-132203359(+)$1	266	4	9	14.9999
GAAGA	chr5:71492188-71492446(+)$1	258	42	47	14.9999
gaaga	chr14:102550954-102551188(-)$1	234	11	16	14.9999
GAAGA	chr20:39728621-39728889(+)$1	268	217	222	14.9999
GAAGA	chr1:205687381-205687619(-)$1	238	98	103	14.9999
GAAGA	chr12:76449810-76450022(-)$1	212	108	113	14.9999
GAAGA	chr7:72856966-72857169(-)$1	203	65	70	14.9999
GAAGA	chr1:94335332-94335602(-)$1	270	174	179	14.9999
GAAGA	chr12:49233762-49233989(-)$1	227	161	166	14.9999
GAAGA	chr11:68660256-68660525(-)$1	269	157	162	14.9999
GAAGA	chr19:2244459-2244699(+)$1	240	97	102	14.9999
GAAGA	chr19:13054520-13054770(+)$1	250	63	68	14.9999
gaaga	chr6:163835693-163836053(+)$1	360	43	48	14.9999
GAAGA	chr5:126154666-126154934(+)$1	268	157	162	14.9999
GAAGA	chr8:48889257-48889514(+)$1	257	9	14	14.9999
GAAGA	chr11:46404128-46404389(+)$1	261	84	89	14.9999
gaaga	chr9:139734782-139735069(+)$1	287	11	16	14.9999
GAAGA	chr17:28506114-28506413(+)$1	299	161	166	14.9999
GAAGA	chr1:24976400-24976655(+)$1	255	100	105	14.9999
GAAGA	chr14:21830894-21831207(-)$1	313	170	175	14.9999
GAAGA	chr12:54686744-54687012(-)$1	268	150	155	14.9999
GAAGA	chr9:127620110-127620360(-)$1	250	49	54	14.9999
GAAGA	chr8:128750557-128750834(+)$1	277	100	105	14.9999
GAAGA	chr1:8926332-8926647(-)$1	315	218	223	14.9999
GAAGA	chr19:39949544-39949783(+)$1	239	110	115	14.9999
GAAGA	chr7:25163244-25163493(-)$1	249	116	121	14.9999
gaaga	chr2:102472460-102472707(+)$1	247	41	46	14.9999
GAAGA	chr19:46029387-46029635(+)$1	248	61	66	14.9999
GAAGA	chr9:100774628-100774836(+)$1	208	74	79	14.9999
GAAGA	chr2:183866624-183866869(-)$1	245	155	160	14.9999
GAAGA	chr6:30548083-30548305(+)$1	222	129	134	14.9999

#otherMatches

#Struct PSSM
dddqq	chr12:30881593-30881953(-)$1	360	192	197	14.9999
^^^^^	chrX:39922024-39922290(-)$1	266	102	107	14.9999
DDOOO	chr10:70545840-70546076(+)$1	236	63	68	14.9999
=====	chr2:131883225-131883586(+)$1	361	119	124	14.9999
}A}DD	chr11:61915884-61916100(+)$1	216	129	134	14.9999
:::::	chr21:34143727-34144149(-)$1	422	218	223	14.9999
^^^^^	chr2:55749144-55749403(+)$1	259	104	109	14.9999
=====	chr1:93306091-93306296(+)$1	205	99	104	14.9999
dd:ff	chr16:11971213-11971496(-)$1	283	152	157	14.9999
JJJJJ	chrX:153994403-153994695(+)$1	292	171	176	14.9999
qqqqq	chrX:129546326-129546626(+)$1	300	252	257	14.9999
:::::	chr10:79796911-79797115(+)$1	204	54	59	14.9999
rrrrr	chr12:104341087-104341305(+)$1	218	4	9	14.9999
::HHH	chr5:145524086-145524326(-)$1	240	3	8	14.9999
!!bb$	chr10:120809348-120809597(-)$1	249	53	58	14.9999
hhhhh	chr12:76442910-76443127(-)$1	217	103	108	14.9999
fffff	chr19:39949419-39949628(+)$1	209	67	72	14.9999
e::::	chr1:24976464-24976677(+)$1	213	36	41	14.9999
d]ddd	chr14:21679497-21679750(-)$1	253	32	37	14.9999
ttttt	chr12:56999570-56999809(-)$1	239	156	161	14.9999
bb###	chr17:4575112-4575392(-)$1	280	23	28	14.9999
:::::	chr1:35653487-35653708(-)$1	221	37	42	14.9999
5====	chr21:45107295-45107519(+)$1	224	124	129	14.9999
dd:::	chr9:138836944-138837168(-)$1	224	115	120	14.9999
%%%%%	chr16:30779479-30779721(+)$1	242	123	128	14.9999
nnnnn	chr17:79637243-79637549(+)$1	306	286	291	14.9999
[bb!!	chr3:51440595-51440889(-)$1	294	60	65	14.9999
ddGGG	chr4:1729709-1729956(+)$1	247	26	31	14.9999
eeeee	chr1:150192894-150193159(-)$1	265	95	100	14.9999
333cc	chr19:49377278-49377545(+)$1	267	136	141	14.9999
eeee:	chr4:77951944-77952224(+)$1	280	30	35	14.9999
g::::	chr1:27271852-27272061(+)$1	209	87	92	14.9999
wwwww	chr1:15736379-15736698(+)$1	319	13	18	14.9999
ccooo	chr2:131976037-131976314(+)$1	277	99	104	14.9999
:::ee	chr12:57106471-57106688(-)$1	217	82	87	14.9999
dddd4	chr1:27267862-27268136(+)$1	274	126	131	14.9999
eqqqq	chr6:33287293-33287553(-)$1	260	59	64	14.9999
EEKKF	chr10:102112022-102112291(+)$1	269	4	9	14.9999
ffff:	chr15:72491733-72492002(-)$1	269	137	142	14.9999
CCLLL	chr19:11113720-11113932(+)$1	212	46	51	14.9999
c::ff	chr17:7480827-7481123(+)$1	296	160	165	14.9999
:ffff	chr5:132203093-132203359(+)$1	266	4	9	14.9999
nnnnn	chr5:71492188-71492446(+)$1	258	42	47	14.9999
PPPBB	chr14:102550954-102551188(-)$1	234	11	16	14.9999
boooo	chr20:39728621-39728889(+)$1	268	217	222	14.9999
EEEE:	chr1:205687381-205687619(-)$1	238	98	103	14.9999
d]ddd	chr12:76449810-76450022(-)$1	212	108	113	14.9999
eeee:	chr7:72856966-72857169(-)$1	203	65	70	14.9999
JJJJJ	chr1:94335332-94335602(-)$1	270	174	179	14.9999
ttddd	chr12:49233762-49233989(-)$1	227	161	166	14.9999
sssss	chr11:68660256-68660525(-)$1	269	157	162	14.9999
eeeee	chr19:2244459-2244699(+)$1	240	97	102	14.9999
+++++	chr19:13054520-13054770(+)$1	250	63	68	14.9999
b&&&&	chr6:163835693-163836053(+)$1	360	43	48	14.9999
e22bb	chr5:126154666-126154934(+)$1	268	157	162	14.9999
mmmme	chr8:48889257-48889514(+)$1	257	9	14	14.9999
yyyyy	chr11:46404128-46404389(+)$1	261	84	89	14.9999
^^^^^	chr9:139734782-139735069(+)$1	287	11	16	14.9999
qqqqq	chr17:28506114-28506413(+)$1	299	161	166	14.9999
eEEEE	chr1:24976400-24976655(+)$1	255	100	105	14.9999
::::c	chr14:21830894-21831207(-)$1	313	170	175	14.9999
EE{BB	chr12:54686744-54687012(-)$1	268	150	155	14.9999
:::::	chr9:127620110-127620360(-)$1	250	49	54	14.9999
b((((	chr8:128750557-128750834(+)$1	277	100	105	14.9999
gggg2	chr1:8926332-8926647(-)$1	315	218	223	14.9999
!!ccc	chr19:39949544-39949783(+)$1	239	110	115	14.9999
}IIII	chr7:25163244-25163493(-)$1	249	116	121	14.9999
:::::	chr2:102472460-102472707(+)$1	247	41	46	14.9999
eeeen	chr19:46029387-46029635(+)$1	248	61	66	14.9999
!ccct	chr9:100774628-100774836(+)$1	208	74	79	14.9999
ppppp	chr2:183866624-183866869(-)$1	245	155	160	14.9999
rrddd	chr6:30548083-30548305(+)$1	222	129	134	14.9999

#DB
(((..	chr12:30881593-30881953(-)$1	1	192	197	14.9999
.....	chrX:39922024-39922290(-)$1	1	102	107	14.9999
((...	chr10:70545840-70546076(+)$1	1	63	68	14.9999
)))))	chr2:131883225-131883586(+)$1	1	119	124	14.9999
.).))	chr11:61915884-61916100(+)$1	1	129	134	14.9999
.....	chr21:34143727-34144149(-)$1	1	218	223	14.9999
.....	chr2:55749144-55749403(+)$1	1	104	109	14.9999
(((((	chr1:93306091-93306296(+)$1	1	99	104	14.9999
)).((	chr16:11971213-11971496(-)$1	1	152	157	14.9999
)))))	chrX:153994403-153994695(+)$1	1	171	176	14.9999
.....	chrX:129546326-129546626(+)$1	1	252	257	14.9999
.....	chr10:79796911-79797115(+)$1	1	54	59	14.9999
.....	chr12:104341087-104341305(+)$1	1	4	9	14.9999
..(((	chr5:145524086-145524326(-)$1	1	3	8	14.9999
..((.	chr10:120809348-120809597(-)$1	1	53	58	14.9999
)))))	chr12:76442910-76443127(-)$1	1	103	108	14.9999
)))))	chr19:39949419-39949628(+)$1	1	67	72	14.9999
)....	chr1:24976464-24976677(+)$1	1	36	41	14.9999
).)))	chr14:21679497-21679750(-)$1	1	32	37	14.9999
.....	chr12:56999570-56999809(-)$1	1	156	161	14.9999
((...	chr17:4575112-4575392(-)$1	1	23	28	14.9999
.....	chr1:35653487-35653708(-)$1	1	37	42	14.9999
.))))	chr21:45107295-45107519(+)$1	1	124	129	14.9999
))...	chr9:138836944-138837168(-)$1	1	115	120	14.9999
.....	chr16:30779479-30779721(+)$1	1	123	128	14.9999
.....	chr17:79637243-79637549(+)$1	1	286	291	14.9999
.((..	chr3:51440595-51440889(-)$1	1	60	65	14.9999
))(((	chr4:1729709-1729956(+)$1	1	26	31	14.9999
(((((	chr1:150192894-150193159(-)$1	1	95	100	14.9999
...))	chr19:49377278-49377545(+)$1	1	136	141	14.9999
)))).	chr4:77951944-77952224(+)$1	1	30	35	14.9999
)....	chr1:27271852-27272061(+)$1	1	87	92	14.9999
.....	chr1:15736379-15736698(+)$1	1	13	18	14.9999
((...	chr2:131976037-131976314(+)$1	1	99	104	14.9999
...((	chr12:57106471-57106688(-)$1	1	82	87	14.9999
)))).	chr1:27267862-27268136(+)$1	1	126	131	14.9999
(....	chr6:33287293-33287553(-)$1	1	59	64	14.9999
((..(	chr10:102112022-102112291(+)$1	1	4	9	14.9999
)))).	chr15:72491733-72492002(-)$1	1	137	142	14.9999
((...	chr19:11113720-11113932(+)$1	1	46	51	14.9999
)..((	chr17:7480827-7481123(+)$1	1	160	165	14.9999
.((((	chr5:132203093-132203359(+)$1	1	4	9	14.9999
.....	chr5:71492188-71492446(+)$1	1	42	47	14.9999
...((	chr14:102550954-102551188(-)$1	1	11	16	14.9999
(....	chr20:39728621-39728889(+)$1	1	217	222	14.9999
((((.	chr1:205687381-205687619(-)$1	1	98	103	14.9999
).)))	chr12:76449810-76450022(-)$1	1	108	113	14.9999
)))).	chr7:72856966-72857169(-)$1	1	65	70	14.9999
)))))	chr1:94335332-94335602(-)$1	1	174	179	14.9999
..)))	chr12:49233762-49233989(-)$1	1	161	166	14.9999
.....	chr11:68660256-68660525(-)$1	1	157	162	14.9999
)))))	chr19:2244459-2244699(+)$1	1	97	102	14.9999
.....	chr19:13054520-13054770(+)$1	1	63	68	14.9999
(....	chr6:163835693-163836053(+)$1	1	43	48	14.9999
)..))	chr5:126154666-126154934(+)$1	1	157	162	14.9999
....)	chr8:48889257-48889514(+)$1	1	9	14	14.9999
.....	chr11:46404128-46404389(+)$1	1	84	89	14.9999
.....	chr9:139734782-139735069(+)$1	1	11	16	14.9999
.....	chr17:28506114-28506413(+)$1	1	161	166	14.9999
)))))	chr1:24976400-24976655(+)$1	1	100	105	14.9999
....(	chr14:21830894-21831207(-)$1	1	170	175	14.9999
((.((	chr12:54686744-54687012(-)$1	1	150	155	14.9999
.....	chr9:127620110-127620360(-)$1	1	49	54	14.9999
(....	chr8:128750557-128750834(+)$1	1	100	105	14.9999
)))).	chr1:8926332-8926647(-)$1	1	218	223	14.9999
..(((	chr19:39949544-39949783(+)$1	1	110	115	14.9999
.))))	chr7:25163244-25163493(-)$1	1	116	121	14.9999
.....	chr2:102472460-102472707(+)$1	1	41	46	14.9999
((((.	chr19:46029387-46029635(+)$1	1	61	66	14.9999
.(((.	chr9:100774628-100774836(+)$1	1	74	79	14.9999
.....	chr2:183866624-183866869(-)$1	1	155	160	14.9999
..)))	chr6:30548083-30548305(+)$1	1	129	134	14.9999

#PSSM
G : 0.91	g : 0.08	
A : 0.91	a : 0.08	
A : 0.91	a : 0.08	
G : 0.91	g : 0.08	
A : 0.91	a : 0.08	

#score	1079.9999999999995
#seq	72
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_transcript_m3_run1.nuc.txt

#NT
AAAAU	chr10:65080126-65080435(-)$1	309	71	76	15.0000
AAAAU	chr7:120897720-120897952(+)$1	232	53	58	15.0000
AAAAU	chr1:197071673-197072023(-)$1	350	24	29	15.0000
aaaau	chr16:23949628-23949899(+)$1	271	83	88	15.0000
aaaau	chr3:152142993-152143280(+)$1	287	250	255	15.0000
aaaau	chr22:17532823-17533114(+)$1	291	208	213	15.0000
AAAAU	chr9:134079211-134079445(+)$1	234	28	33	15.0000
aaaau	chr8:74640299-74640566(-)$1	267	9	14	15.0000
AAAAU	chr13:69854947-69855223(+)$1	276	86	91	15.0000
AAAAU	chr21:39408791-39409090(-)$1	299	75	80	15.0000
aaaau	chr1:219370815-219371074(+)$1	259	36	41	15.0000
AAAAU	chr7:120871794-120872037(+)$1	243	97	102	15.0000
aaaau	chr19:34697652-34697939(+)$1	287	33	38	15.0000
AAAAU	chr4:17875525-17875806(-)$1	281	231	236	15.0000
aaaau	chr9:140687245-140687583(+)$1	338	75	80	15.0000
aaaau	chr11:73926921-73927220(+)$1	299	233	238	15.0000
aaaau	chr1:97220130-97220388(+)$1	258	0	5	15.0000
aaaau	chr17:30927270-30927566(-)$1	296	107	112	15.0000
aaaaU	chr8:130437577-130437887(-)$1	310	258	263	15.0000
aaaau	chr11:2689780-2690187(-)$1	407	155	160	15.0000
aaaau	chr16:74347143-74347452(-)$1	309	92	97	15.0000
AAAAU	chr21:39469377-39469638(-)$1	261	226	231	15.0000
aaaau	chr11:11931651-11931893(+)$1	242	83	88	15.0000
aaaau	chr21:39440217-39440464(-)$1	247	187	192	15.0000
AAAAU	chr11:5422710-5422956(-)$1	246	44	49	15.0000
AAAAU	chr18:19154036-19154308(-)$1	272	72	77	15.0000
AAAAU	chr9:127373303-127373556(-)$1	253	71	76	15.0000
AAAAU	chr3:44886795-44887067(+)$1	272	1	6	15.0000
aaaau	chr6:147621240-147621466(+)$1	226	106	111	15.0000
aaaau	chr6:69551644-69551901(+)$1	257	52	57	15.0000
aaaau	chr10:5737802-5738087(+)$1	285	249	254	15.0000
aaaau	chr8:91270455-91270687(+)$1	232	14	19	15.0000
AAAAU	chr8:91416810-91417087(+)$1	277	110	115	15.0000
aaaau	chr18:1364047-1364323(-)$1	276	229	234	15.0000
AAAAU	chr7:119347871-119348089(-)$1	218	4	9	15.0000
AAAAU	chr2:127438110-127438405(+)$1	295	233	238	15.0000
aaaau	chr17:74423056-74423345(-)$1	289	129	134	15.0000
aaaau	chr3:38276983-38277307(+)$1	324	10	15	15.0000
AAAAU	chr17:13472798-13473069(-)$1	271	84	89	15.0000
AAAAU	chr11:5356161-5356514(-)$1	353	338	343	15.0000
AAAAU	chr7:120886683-120886942(+)$1	259	176	181	15.0000
aaaau	chr12:46811800-46812106(+)$1	306	164	169	15.0000
AAAAU	chr17:58326625-58326906(-)$1	281	60	65	15.0000
aaaau	chr11:65267209-65267415(+)$1	206	83	88	15.0000
aaaau	chr3:136596550-136596815(+)$1	265	29	34	15.0000
aaaau	chr1:213355432-213355694(+)$1	262	19	24	15.0000
AAAAU	chr17:68026342-68026606(-)$1	264	22	27	15.0000
AAAAU	chrX:106309991-106310251(-)$1	260	102	107	15.0000
aaaau	chr1:22010867-22011136(-)$1	269	71	76	15.0000
aaaau	chr2:162044821-162045079(+)$1	258	21	26	15.0000
aaaau	chr3:13411509-13411761(-)$1	252	90	95	15.0000
aaaau	chr15:31025418-31025669(+)$1	251	188	193	15.0000
AAAAU	chr11:62285870-62286126(-)$1	256	246	251	15.0000
AAAAU	chr10:7392296-7392580(-)$1	284	37	42	15.0000
aaaau	chr21:19967128-19967416(-)$1	288	40	45	15.0000
AAAAU	chr7:157030793-157031048(+)$1	255	93	98	15.0000
AAAAU	chr11:62295308-62295558(-)$1	250	89	94	15.0000
AAAAU	chr11:3415423-3415663(+)$1	240	184	189	15.0000
AAAAU	chr5:29002018-29002287(+)$1	269	75	80	15.0000
aaaau	chr6:97690204-97690513(-)$1	309	104	109	15.0000
aaaau	chr2:3326925-3327280(-)$1	355	80	85	15.0000
aaaau	chr9:125960397-125960665(-)$1	268	53	58	15.0000
aaaau	chr11:5357964-5358265(-)$1	301	211	216	15.0000
aaaau	chr7:76224067-76224344(+)$1	277	225	230	15.0000
AAAAU	chr4:86682653-86682937(+)$1	284	110	115	15.0000
aaaau	chr9:133651422-133651712(+)$1	290	43	48	15.0000
aaaau	chr4:2330477-2330763(-)$1	286	68	73	15.0000
aaaau	chr4:13448269-13448564(-)$1	295	138	143	15.0000
aaaau	chrX:113069604-113069864(-)$1	260	77	82	15.0000

#otherMatches

#Struct PSSM
eee99	chr7:149303673-149303913(-)$1	240	88	93	15.0000
33ddd	chr10:65080126-65080435(-)$1	309	71	76	15.0000
fffff	chr7:120897720-120897952(+)$1	232	53	58	15.0000
####f	chr1:197071673-197072023(-)$1	350	24	29	15.0000
33eee	chr16:23949628-23949899(+)$1	271	83	88	15.0000
5555i	chr3:152142993-152143280(+)$1	287	250	255	15.0000
qqqqq	chr22:17532823-17533114(+)$1	291	208	213	15.0000
ggggg	chr9:134079211-134079445(+)$1	234	28	33	15.0000
:::::	chr8:74640299-74640566(-)$1	267	9	14	15.0000
::::e	chr13:69854947-69855223(+)$1	276	86	91	15.0000
ELLLA	chr21:39408791-39409090(-)$1	299	75	80	15.0000
:::::	chr1:219370815-219371074(+)$1	259	36	41	15.0000
fffff	chr7:120871794-120872037(+)$1	243	97	102	15.0000
:::::	chr19:34697652-34697939(+)$1	287	33	38	15.0000
ggggg	chr4:17875525-17875806(-)$1	281	231	236	15.0000
g::::	chr9:140687245-140687583(+)$1	338	75	80	15.0000
ooodd	chr11:73926921-73927220(+)$1	299	233	238	15.0000
::fff	chr1:97220130-97220388(+)$1	258	0	5	15.0000
ooooo	chr17:30927270-30927566(-)$1	296	107	112	15.0000
ttttt	chr8:130437577-130437887(-)$1	310	258	263	15.0000
:::::	chr11:2689780-2690187(-)$1	407	155	160	15.0000
$$$$a	chr16:74347143-74347452(-)$1	309	92	97	15.0000
rrree	chr21:39469377-39469638(-)$1	261	226	231	15.0000
ppppp	chr11:11931651-11931893(+)$1	242	83	88	15.0000
55555	chr21:39440217-39440464(-)$1	247	187	192	15.0000
:::::	chr11:5422710-5422956(-)$1	246	44	49	15.0000
mmmdd	chr18:19154036-19154308(-)$1	272	72	77	15.0000
"""bb	chr9:127373303-127373556(-)$1	253	71	76	15.0000
:::::	chr3:44886795-44887067(+)$1	272	1	6	15.0000
nneee	chr6:147621240-147621466(+)$1	226	106	111	15.0000
:::::	chr6:69551644-69551901(+)$1	257	52	57	15.0000
:::cc	chr10:5737802-5738087(+)$1	285	249	254	15.0000
deeee	chr8:91270455-91270687(+)$1	232	14	19	15.0000
qqggg	chr8:91416810-91417087(+)$1	277	110	115	15.0000
ggnnn	chr18:1364047-1364323(-)$1	276	229	234	15.0000
:::::	chr7:119347871-119348089(-)$1	218	4	9	15.0000
+++++	chr2:127438110-127438405(+)$1	295	233	238	15.0000
444cc	chr17:74423056-74423345(-)$1	289	129	134	15.0000
:::::	chr3:38276983-38277307(+)$1	324	10	15	15.0000
tttbb	chr17:13472798-13473069(-)$1	271	84	89	15.0000
CIIII	chr11:5356161-5356514(-)$1	353	338	343	15.0000
dd:::	chr7:120886683-120886942(+)$1	259	176	181	15.0000
5555e	chr12:46811800-46812106(+)$1	306	164	169	15.0000
MMMMF	chr17:58326625-58326906(-)$1	281	60	65	15.0000
xxxxx	chr11:65267209-65267415(+)$1	206	83	88	15.0000
qqqqq	chr3:136596550-136596815(+)$1	265	29	34	15.0000
EMMMM	chr1:213355432-213355694(+)$1	262	19	24	15.0000
BBEEE	chr17:68026342-68026606(-)$1	264	22	27	15.0000
:eeee	chrX:106309991-106310251(-)$1	260	102	107	15.0000
:::::	chr1:22010867-22011136(-)$1	269	71	76	15.0000
:::::	chr2:162044821-162045079(+)$1	258	21	26	15.0000
brrrr	chr3:13411509-13411761(-)$1	252	90	95	15.0000
rrrrr	chr15:31025418-31025669(+)$1	251	188	193	15.0000
?????	chr11:62285870-62286126(-)$1	256	246	251	15.0000
:::::	chr10:7392296-7392580(-)$1	284	37	42	15.0000
SSSSS	chr21:19967128-19967416(-)$1	288	40	45	15.0000
eeedd	chr7:157030793-157031048(+)$1	255	93	98	15.0000
cmmmm	chr11:62295308-62295558(-)$1	250	89	94	15.0000
!gggg	chr11:3415423-3415663(+)$1	240	184	189	15.0000
ggooo	chr5:29002018-29002287(+)$1	269	75	80	15.0000
qqqdd	chr6:97690204-97690513(-)$1	309	104	109	15.0000
^^^^^	chr2:3326925-3327280(-)$1	355	80	85	15.0000
####d	chr9:125960397-125960665(-)$1	268	53	58	15.0000
rrrrr	chr11:5357964-5358265(-)$1	301	211	216	15.0000
^^^^^	chr7:76224067-76224344(+)$1	277	225	230	15.0000
::::d	chr4:86682653-86682937(+)$1	284	110	115	15.0000
c%%%%	chr9:133651422-133651712(+)$1	290	43	48	15.0000
xxxxx	chr4:2330477-2330763(-)$1	286	68	73	15.0000
:::::	chr4:13448269-13448564(-)$1	295	138	143	15.0000
:::::	chrX:113069604-113069864(-)$1	260	77	82	15.0000

#DB
)))..	chr7:149303673-149303913(-)$1	1	88	93	15.0000
..)))	chr10:65080126-65080435(-)$1	1	71	76	15.0000
(((((	chr7:120897720-120897952(+)$1	1	53	58	15.0000
....(	chr1:197071673-197072023(-)$1	1	24	29	15.0000
..)))	chr16:23949628-23949899(+)$1	1	83	88	15.0000
....)	chr3:152142993-152143280(+)$1	1	250	255	15.0000
.....	chr22:17532823-17533114(+)$1	1	208	213	15.0000
(((((	chr9:134079211-134079445(+)$1	1	28	33	15.0000
.....	chr8:74640299-74640566(-)$1	1	9	14	15.0000
....(	chr13:69854947-69855223(+)$1	1	86	91	15.0000
(...(	chr21:39408791-39409090(-)$1	1	75	80	15.0000
.....	chr1:219370815-219371074(+)$1	1	36	41	15.0000
)))))	chr7:120871794-120872037(+)$1	1	97	102	15.0000
.....	chr19:34697652-34697939(+)$1	1	33	38	15.0000
(((((	chr4:17875525-17875806(-)$1	1	231	236	15.0000
)....	chr9:140687245-140687583(+)$1	1	75	80	15.0000
...))	chr11:73926921-73927220(+)$1	1	233	238	15.0000
..(((	chr1:97220130-97220388(+)$1	1	0	5	15.0000
.....	chr17:30927270-30927566(-)$1	1	107	112	15.0000
.....	chr8:130437577-130437887(-)$1	1	258	263	15.0000
.....	chr11:2689780-2690187(-)$1	1	155	160	15.0000
....(	chr16:74347143-74347452(-)$1	1	92	97	15.0000
...))	chr21:39469377-39469638(-)$1	1	226	231	15.0000
.....	chr11:11931651-11931893(+)$1	1	83	88	15.0000
.....	chr21:39440217-39440464(-)$1	1	187	192	15.0000
.....	chr11:5422710-5422956(-)$1	1	44	49	15.0000
...))	chr18:19154036-19154308(-)$1	1	72	77	15.0000
...((	chr9:127373303-127373556(-)$1	1	71	76	15.0000
.....	chr3:44886795-44887067(+)$1	1	1	6	15.0000
..)))	chr6:147621240-147621466(+)$1	1	106	111	15.0000
.....	chr6:69551644-69551901(+)$1	1	52	57	15.0000
...((	chr10:5737802-5738087(+)$1	1	249	254	15.0000
(((((	chr8:91270455-91270687(+)$1	1	14	19	15.0000
..)))	chr8:91416810-91417087(+)$1	1	110	115	15.0000
((...	chr18:1364047-1364323(-)$1	1	229	234	15.0000
.....	chr7:119347871-119348089(-)$1	1	4	9	15.0000
.....	chr2:127438110-127438405(+)$1	1	233	238	15.0000
...))	chr17:74423056-74423345(-)$1	1	129	134	15.0000
.....	chr3:38276983-38277307(+)$1	1	10	15	15.0000
...))	chr17:13472798-13473069(-)$1	1	84	89	15.0000
)))))	chr11:5356161-5356514(-)$1	1	338	343	15.0000
))...	chr7:120886683-120886942(+)$1	1	176	181	15.0000
....)	chr12:46811800-46812106(+)$1	1	164	169	15.0000
....(	chr17:58326625-58326906(-)$1	1	60	65	15.0000
.....	chr11:65267209-65267415(+)$1	1	83	88	15.0000
.....	chr3:136596550-136596815(+)$1	1	29	34	15.0000
(....	chr1:213355432-213355694(+)$1	1	19	24	15.0000
(((((	chr17:68026342-68026606(-)$1	1	22	27	15.0000
.((((	chrX:106309991-106310251(-)$1	1	102	107	15.0000
.....	chr1:22010867-22011136(-)$1	1	71	76	15.0000
.....	chr2:162044821-162045079(+)$1	1	21	26	15.0000
(....	chr3:13411509-13411761(-)$1	1	90	95	15.0000
.....	chr15:31025418-31025669(+)$1	1	188	193	15.0000
.....	chr11:62285870-62286126(-)$1	1	246	251	15.0000
.....	chr10:7392296-7392580(-)$1	1	37	42	15.0000
.....	chr21:19967128-19967416(-)$1	1	40	45	15.0000
)))((	chr7:157030793-157031048(+)$1	1	93	98	15.0000
(....	chr11:62295308-62295558(-)$1	1	89	94	15.0000
.((((	chr11:3415423-3415663(+)$1	1	184	189	15.0000
((...	chr5:29002018-29002287(+)$1	1	75	80	15.0000
...))	chr6:97690204-97690513(-)$1	1	104	109	15.0000
.....	chr2:3326925-3327280(-)$1	1	80	85	15.0000
....(	chr9:125960397-125960665(-)$1	1	53	58	15.0000
.....	chr11:5357964-5358265(-)$1	1	211	216	15.0000
.....	chr7:76224067-76224344(+)$1	1	225	230	15.0000
....(	chr4:86682653-86682937(+)$1	1	110	115	15.0000
(....	chr9:133651422-133651712(+)$1	1	43	48	15.0000
.....	chr4:2330477-2330763(-)$1	1	68	73	15.0000
.....	chr4:13448269-13448564(-)$1	1	138	143	15.0000
.....	chrX:113069604-113069864(-)$1	1	77	82	15.0000

#PSSM
a : 0.57	A : 0.42	
a : 0.57	A : 0.42	
a : 0.57	A : 0.42	
a : 0.57	A : 0.42	
u : 0.55	U : 0.44	

#score	1050.0
#seq	70
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_UTR_m2_run1.nuc.txt

#NT
UUGUUGUU	chr5:179147314-179147562(+)$1	248	69	77	13.3750
UUGCUUUC	chr17:27050608-27050860(+)$1	252	200	208	11.9687
UUUUUUUU	chr3:184052710-184053008(+)$1	298	283	291	14.0000
UUGUGUUA	chr17:8076713-8076964(-)$1	251	215	223	13.0625
UUGUGUUA	chr17:8076658-8076871(-)$1	213	122	130	13.0625
UUGUGUUA	chr17:8076671-8076902(-)$1	231	153	161	13.0625
uugauuuu	chr8:124348512-124348762(-)$1	250	209	217	13.3750
CUGUUUUU	chr12:76449748-76449964(-)$1	216	111	119	13.6875
UUCUUUUU	chr19:8532318-8532535(+)$1	217	34	42	14.0000
uuguuuuu	chr13:107196029-107196277(-)$1	248	7	15	17.5937
UUCUUUUA	chr5:170814890-170815110(+)$1	220	10	18	12.9062
UUGUUUUG	chr12:104341409-104341685(+)$1	276	104	112	16.1875
UUGUUAUU	chr9:127998515-127998793(-)$1	278	258	266	13.2187
UUGUAUUU	chr8:33370954-33371172(+)$1	218	167	175	13.8437
UUGUUUUG	chr6:31785376-31785663(+)$1	287	106	114	16.1875
UUUUUUUC	chr6:74229656-74229880(-)$1	224	82	90	12.7500
CUGUUUUU	chr12:76449740-76449948(-)$1	208	95	103	13.6875
AUGUUUUA	chr8:97243080-97243373(-)$1	293	176	184	12.7500
UUGUUUUC	chr6:31804772-31805004(+)$1	232	222	230	16.3437
AUGUUUUC	chr14:102549270-102549477(-)$1	207	185	193	12.5937
UUGUUUUG	chr12:104341332-104341586(+)$1	254	181	189	16.1875
UUGUUUUG	chr1:45244215-45244460(+)$1	245	146	154	16.1875
UUGUUGUU	chr12:21788376-21788670(-)$1	294	12	20	13.3750
UUGUUUUG	chr11:75111333-75111659(+)$1	326	72	80	16.1875
uuguuuuu	chr6:31797644-31797946(+)$1	302	276	284	17.5937
UUGAUUUU	chr2:47388758-47389000(-)$1	242	173	181	13.3750
UUCUUUUA	chr11:122929941-122930216(-)$1	275	207	215	12.9062
UUGUGUUC	chr1:16199905-16200159(+)$1	254	80	88	12.9062
AUGUUUUC	chr10:70546202-70546434(+)$1	232	73	81	12.5937
uuuuuuuu	chr17:37360812-37361058(+)$1	246	211	219	14.0000
UUGUAUUU	chr8:33370926-33371150(+)$1	224	195	203	13.8437

#otherMatches

#Struct PSSM
pppppppc	chr11:122929539-122929777(-)$1	238	219	227	16.5000
qqqqqqqe	chr5:179147314-179147562(+)$1	248	69	77	13.3750
eeqqqqqq	chr17:27050608-27050860(+)$1	252	200	208	11.9687
DDD:::::	chr3:184052710-184053008(+)$1	298	283	291	14.0000
fffff[cc	chr17:8076713-8076964(-)$1	251	215	223	13.0625
qqccc:::	chr17:8076658-8076871(-)$1	213	122	130	13.0625
fffff[cc	chr17:8076671-8076902(-)$1	231	153	161	13.0625
eedddd22	chr8:124348512-124348762(-)$1	250	209	217	13.3750
555ggggg	chr12:76449748-76449964(-)$1	216	111	119	13.6875
:::hhhhh	chr19:8532318-8532535(+)$1	217	34	42	14.0000
^^^^^^^^	chr13:107196029-107196277(-)$1	248	7	15	17.5937
eeee::::	chr5:170814890-170815110(+)$1	220	10	18	12.9062
##ccc!!b	chr12:104341409-104341685(+)$1	276	104	112	16.1875
nnnnffff	chr9:127998515-127998793(-)$1	278	258	266	13.2187
gggg!!gg	chr8:33370954-33371172(+)$1	218	167	175	13.8437
sshhhhhh	chr6:31785376-31785663(+)$1	287	106	114	16.1875
========	chr6:74229656-74229880(-)$1	224	82	90	12.7500
555ggggg	chr12:76449740-76449948(-)$1	208	95	103	13.6875
hhhhhhss	chr8:97243080-97243373(-)$1	293	176	184	12.7500
::::::::	chr6:31804772-31805004(+)$1	232	222	230	16.3437
C}FFFFFF	chr14:102549270-102549477(-)$1	207	185	193	12.5937
eeee22ff	chr12:104341332-104341586(+)$1	254	181	189	16.1875
d:::IIII	chr1:45244215-45244460(+)$1	245	146	154	16.1875
::::CCC{	chr12:21788376-21788670(-)$1	294	12	20	13.3750
[ccclllc	chr11:75111333-75111659(+)$1	326	72	80	16.1875
::::::::	chr6:31797644-31797946(+)$1	302	276	284	17.5937
vvvvvvvv	chr2:47388758-47389000(-)$1	242	173	181	13.3750
dd]hhhhh	chr11:122929941-122930216(-)$1	275	207	215	12.9062
f[ffffff	chr1:16199905-16200159(+)$1	254	80	88	12.9062
^^eeeee]	chr10:70546202-70546434(+)$1	232	73	81	12.5937
GGGJJJJJ	chr17:37360812-37361058(+)$1	246	211	219	14.0000
////////	chr8:33370926-33371150(+)$1	224	195	203	13.8437

#DB
.......)	chr11:122929539-122929777(-)$1	1	219	227	16.5000
.......)	chr5:179147314-179147562(+)$1	1	69	77	13.3750
((......	chr17:27050608-27050860(+)$1	1	200	208	11.9687
))).....	chr3:184052710-184053008(+)$1	1	283	291	14.0000
(((((.((	chr17:8076713-8076964(-)$1	1	215	223	13.0625
..)))...	chr17:8076658-8076871(-)$1	1	122	130	13.0625
(((((.((	chr17:8076671-8076902(-)$1	1	153	161	13.0625
))))))..	chr8:124348512-124348762(-)$1	1	209	217	13.3750
...)))))	chr12:76449748-76449964(-)$1	1	111	119	13.6875
...(((((	chr19:8532318-8532535(+)$1	1	34	42	14.0000
........	chr13:107196029-107196277(-)$1	1	7	15	17.5937
))))....	chr5:170814890-170815110(+)$1	1	10	18	12.9062
..(((..(	chr12:104341409-104341685(+)$1	1	104	112	16.1875
....))))	chr9:127998515-127998793(-)$1	1	258	266	13.2187
((((..((	chr8:33370954-33371172(+)$1	1	167	175	13.8437
..))))))	chr6:31785376-31785663(+)$1	1	106	114	16.1875
((((((((	chr6:74229656-74229880(-)$1	1	82	90	12.7500
...)))))	chr12:76449740-76449948(-)$1	1	95	103	13.6875
((((((..	chr8:97243080-97243373(-)$1	1	176	184	12.7500
........	chr6:31804772-31805004(+)$1	1	222	230	16.3437
).))))))	chr14:102549270-102549477(-)$1	1	185	193	12.5937
))))..))	chr12:104341332-104341586(+)$1	1	181	189	16.1875
)...))))	chr1:45244215-45244460(+)$1	1	146	154	16.1875
....(((.	chr12:21788376-21788670(-)$1	1	12	20	13.3750
.(((...)	chr11:75111333-75111659(+)$1	1	72	80	16.1875
........	chr6:31797644-31797946(+)$1	1	276	284	17.5937
........	chr2:47388758-47389000(-)$1	1	173	181	13.3750
)).)))))	chr11:122929941-122930216(-)$1	1	207	215	12.9062
(.((((((	chr1:16199905-16200159(+)$1	1	80	88	12.9062
..))))).	chr10:70546202-70546434(+)$1	1	73	81	12.5937
))))))))	chr17:37360812-37361058(+)$1	1	211	219	14.0000
........	chr8:33370926-33371150(+)$1	1	195	203	13.8437

#PSSM
U : 0.71	u : 0.12	A : 0.09	C : 0.06	
U : 0.87	u : 0.12	
G : 0.71	g : 0.09	C : 0.09	U : 0.06	u : 0.03	
U : 0.81	u : 0.09	C : 0.03	a : 0.03	A : 0.03	
U : 0.68	G : 0.12	u : 0.12	A : 0.06	
U : 0.78	u : 0.12	G : 0.06	A : 0.03	
U : 0.87	u : 0.12	
U : 0.31	A : 0.21	C : 0.18	G : 0.15	u : 0.12	

#score	453.3125
#seq	32
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_UTR_m1_run2.nuc.txt

#NT
GAAGA	chr17:30678703-30678917(+)$1	214	128	133	15.0000
gaaga	chr14:102551102-102551328(-)$1	226	35	40	15.0000
GAAGA	chr10:75910929-75911208(+)$1	279	16	21	15.0000
GAAGA	chr20:31388545-31388808(+)$1	263	98	103	15.0000
GAAGA	chr14:39648330-39648545(+)$1	215	9	14	15.0000
gaaga	chr4:174253059-174253274(-)$1	215	2	7	15.0000
GAAGA	chrX:153184361-153184603(-)$1	242	201	206	15.0000
GAAGA	chr1:46073308-46073554(+)$1	246	28	33	15.0000
GAAGA	chr21:33975399-33975675(-)$1	276	134	139	15.0000
GAAGA	chr12:133240600-133240834(-)$1	234	187	192	15.0000
GAAGA	chr5:70779602-70779820(+)$1	218	81	86	15.0000
GAAGA	chr17:48823232-48823451(+)$1	219	20	25	15.0000
GAAGA	chr12:132241042-132241294(+)$1	252	53	58	15.0000
GAAGA	chr2:71661815-71662105(+)$1	290	101	106	15.0000
GAAGA	chr14:105916289-105916534(+)$1	245	113	118	15.0000
GAAGA	chr19:30499810-30500042(+)$1	232	129	134	15.0000
gaaga	chr19:10670885-10671181(-)$1	296	150	155	15.0000
GAAGA	chr6:32947533-32947788(+)$1	255	23	28	15.0000
GAAGA	chr1:166810130-166810435(+)$1	305	102	107	15.0000
gaaga	chr19:13054616-13054825(+)$1	209	63	68	15.0000
GAAGA	chr8:92083268-92083631(+)$1	363	113	118	15.0000
GAAGA	chr11:62458000-62458264(-)$1	264	150	155	15.0000
GAAGA	chr3:184043253-184043509(+)$1	256	86	91	15.0000
GAAGA	chr3:132379325-132379615(+)$1	290	178	183	15.0000
GAAGA	chr1:156163814-156164122(+)$1	308	106	111	15.0000
GAAGA	chr9:36375832-36376185(-)$1	353	64	69	15.0000
GAAGA	chr7:102964843-102965083(-)$1	240	39	44	15.0000
GAAGA	chr2:128051084-128051391(-)$1	307	101	106	15.0000
GAAGA	chr19:39936350-39936565(+)$1	215	176	181	15.0000
GAAGA	chr2:20451230-20451514(-)$1	284	114	119	15.0000
gaaga	chr8:101315337-101315673(-)$1	336	102	107	15.0000
GAAGA	chr6:64394289-64394586(+)$1	297	24	29	15.0000
GAAGA	chr3:47125360-47125637(-)$1	277	122	127	15.0000
GAAGA	chr6:31726443-31726731(+)$1	288	105	110	15.0000
GAAGA	chr5:137505933-137506191(-)$1	258	106	111	15.0000
GAAGA	chr3:48668328-48668585(-)$1	257	114	119	15.0000
GAAGA	chr22:30734802-30735126(-)$1	324	234	239	15.0000
GAAGA	chr22:18389433-18389749(-)$1	316	23	28	15.0000
GAAGA	chr16:69681300-69681555(+)$1	255	82	87	15.0000
gaaga	chr14:102551213-102551427(-)$1	214	134	139	15.0000
GAAGA	chr3:182683294-182683609(-)$1	315	250	255	15.0000
GAAGA	chr3:49017764-49018030(+)$1	266	80	85	15.0000
GAAGA	chr11:93470193-93470418(-)$1	225	103	108	15.0000
GAAGA	chr2:132021306-132021543(+)$1	237	70	75	15.0000
GAAGA	chr20:1433574-1433810(-)$1	236	48	53	15.0000
GAAGA	chr16:69402178-69402450(-)$1	272	116	121	15.0000
GAAGA	chr11:27360025-27360283(-)$1	258	66	71	15.0000
GAAGA	chr10:103920284-103920553(+)$1	269	106	111	15.0000
GAAGA	chr19:10828720-10828990(+)$1	270	216	221	15.0000
GAAGA	chr3:184049227-184049479(+)$1	252	234	239	15.0000
GAAGA	chrX:11779534-11779802(+)$1	268	14	19	15.0000
GAAGA	chr17:26906926-26907173(-)$1	247	211	216	15.0000
GAAGA	chr20:30327074-30327296(+)$1	222	87	92	15.0000
GAAGA	chr5:122717710-122717971(-)$1	261	124	129	15.0000
GAAGA	chr19:10764978-10765240(+)$1	262	164	169	15.0000
GAAGA	chr17:42475981-42476250(-)$1	269	23	28	15.0000
GAAGA	chr5:131939066-131939280(+)$1	214	22	27	15.0000
GAAGA	chr3:121415126-121415418(-)$1	292	72	77	15.0000
GAAGA	chr3:44893212-44893458(+)$1	246	70	75	15.0000
GAAGA	chr22:35659055-35659319(+)$1	264	110	115	15.0000
GAAGA	chr15:89859526-89859768(+)$1	242	12	17	15.0000
GAAGA	chr2:189156575-189156877(+)$1	302	106	111	15.0000
gaAGA	chr22:29945014-29945247(-)$1	233	68	73	15.0000
GAAGA	chr19:10261968-10262270(-)$1	302	142	147	15.0000
GAAGA	chr5:133496592-133496863(-)$1	271	87	92	15.0000
GAAGA	chr8:33355849-33356114(+)$1	265	130	135	15.0000
GAAGA	chr6:26469136-26469405(+)$1	269	253	258	15.0000
GAAGA	chr2:113416391-113416677(+)$1	286	69	74	15.0000
gaaga	chr19:10468024-10468276(-)$1	252	124	129	15.0000
GAAGA	chr11:129992165-129992428(+)$1	263	59	64	15.0000
GAAGA	chr16:2050977-2051217(-)$1	240	26	31	15.0000
GAAGA	chr17:79804251-79804474(-)$1	223	34	39	15.0000
GAAGA	chr16:89349581-89349829(-)$1	248	134	139	15.0000
GAAGA	chr12:112845942-112846163(-)$1	221	171	176	15.0000
GAAGA	chr6:30711050-30711368(-)$1	318	97	102	15.0000

#otherMatches

#Struct PSSM
OOOHH	chr15:40488789-40489048(+)$1	259	17	22	15.0000
]a444	chr17:30678703-30678917(+)$1	214	128	133	15.0000
:::::	chr14:102551102-102551328(-)$1	226	35	40	15.0000
(((((	chr10:75910929-75911208(+)$1	279	16	21	15.0000
eeeee	chr20:31388545-31388808(+)$1	263	98	103	15.0000
IIIII	chr14:39648330-39648545(+)$1	215	9	14	15.0000
:::::	chr4:174253059-174253274(-)$1	215	2	7	15.0000
rrrrr	chrX:153184361-153184603(-)$1	242	201	206	15.0000
^^^^^	chr1:46073308-46073554(+)$1	246	28	33	15.0000
wwwww	chr21:33975399-33975675(-)$1	276	134	139	15.0000
D????	chr12:133240600-133240834(-)$1	234	187	192	15.0000
:::::	chr5:70779602-70779820(+)$1	218	81	86	15.0000
zzzzz	chr17:48823232-48823451(+)$1	219	20	25	15.0000
ff###	chr12:132241042-132241294(+)$1	252	53	58	15.0000
#bb[e	chr2:71661815-71662105(+)$1	290	101	106	15.0000
wwwee	chr14:105916289-105916534(+)$1	245	113	118	15.0000
iiiii	chr19:30499810-30500042(+)$1	232	129	134	15.0000
B}A}F	chr19:10670885-10671181(-)$1	296	150	155	15.0000
iiiii	chr6:32947533-32947788(+)$1	255	23	28	15.0000
qqqqc	chr1:166810130-166810435(+)$1	305	102	107	15.0000
:::::	chr19:13054616-13054825(+)$1	209	63	68	15.0000
g]bb:	chr8:92083268-92083631(+)$1	363	113	118	15.0000
d]ddd	chr11:62458000-62458264(-)$1	264	150	155	15.0000
ooooo	chr3:184043253-184043509(+)$1	256	86	91	15.0000
nnndd	chr3:132379325-132379615(+)$1	290	178	183	15.0000
%%%%%	chr1:156163814-156164122(+)$1	308	106	111	15.0000
DD::f	chr9:36375832-36376185(-)$1	353	64	69	15.0000
llhhh	chr7:102964843-102965083(-)$1	240	39	44	15.0000
eeeeb	chr2:128051084-128051391(-)$1	307	101	106	15.0000
fffff	chr19:39936350-39936565(+)$1	215	176	181	15.0000
JJJJJ	chr2:20451230-20451514(-)$1	284	114	119	15.0000
ii22b	chr8:101315337-101315673(-)$1	336	102	107	15.0000
]gggg	chr6:64394289-64394586(+)$1	297	24	29	15.0000
qqbb]	chr3:47125360-47125637(-)$1	277	122	127	15.0000
eeeee	chr6:31726443-31726731(+)$1	288	105	110	15.0000
ddd33	chr5:137505933-137506191(-)$1	258	106	111	15.0000
cccmm	chr3:48668328-48668585(-)$1	257	114	119	15.0000
fffff	chr22:30734802-30735126(-)$1	324	234	239	15.0000
ppddd	chr22:18389433-18389749(-)$1	316	23	28	15.0000
FFF::	chr16:69681300-69681555(+)$1	255	82	87	15.0000
}CCC:	chr14:102551213-102551427(-)$1	214	134	139	15.0000
=====	chr3:182683294-182683609(-)$1	315	250	255	15.0000
cc"""	chr3:49017764-49018030(+)$1	266	80	85	15.0000
[gggg	chr11:93470193-93470418(-)$1	225	103	108	15.0000
:::GG	chr2:132021306-132021543(+)$1	237	70	75	15.0000
lleee	chr20:1433574-1433810(-)$1	236	48	53	15.0000
JJJJ:	chr16:69402178-69402450(-)$1	272	116	121	15.0000
eeenn	chr11:27360025-27360283(-)$1	258	66	71	15.0000
cc:::	chr10:103920284-103920553(+)$1	269	106	111	15.0000
aoooo	chr19:10828720-10828990(+)$1	270	216	221	15.0000
qqqqq	chr3:184049227-184049479(+)$1	252	234	239	15.0000
bb[bb	chrX:11779534-11779802(+)$1	268	14	19	15.0000
iiiii	chr17:26906926-26907173(-)$1	247	211	216	15.0000
ii:::	chr20:30327074-30327296(+)$1	222	87	92	15.0000
FFFFF	chr5:122717710-122717971(-)$1	261	124	129	15.0000
QQQQQ	chr19:10764978-10765240(+)$1	262	164	169	15.0000
ee###	chr17:42475981-42476250(-)$1	269	23	28	15.0000
:::::	chr5:131939066-131939280(+)$1	214	22	27	15.0000
"""a[	chr3:121415126-121415418(-)$1	292	72	77	15.0000
DNNNN	chr3:44893212-44893458(+)$1	246	70	75	15.0000
ggg[=	chr22:35659055-35659319(+)$1	264	110	115	15.0000
fffff	chr15:89859526-89859768(+)$1	242	12	17	15.0000
ENNNN	chr2:189156575-189156877(+)$1	302	106	111	15.0000
ccmmm	chr22:29945014-29945247(-)$1	233	68	73	15.0000
bb>>>	chr19:10261968-10262270(-)$1	302	142	147	15.0000
nnnbb	chr5:133496592-133496863(-)$1	271	87	92	15.0000
mmmmd	chr8:33355849-33356114(+)$1	265	130	135	15.0000
:::::	chr6:26469136-26469405(+)$1	269	253	258	15.0000
eeeeE	chr2:113416391-113416677(+)$1	286	69	74	15.0000
EEHHH	chr19:10468024-10468276(-)$1	252	124	129	15.0000
&&&&&	chr11:129992165-129992428(+)$1	263	59	64	15.0000
rrrrr	chr16:2050977-2051217(-)$1	240	26	31	15.0000
nnnnn	chr17:79804251-79804474(-)$1	223	34	39	15.0000
^^^^^	chr16:89349581-89349829(-)$1	248	134	139	15.0000
##bb[	chr12:112845942-112846163(-)$1	221	171	176	15.0000
:::::	chr6:30711050-30711368(-)$1	318	97	102	15.0000

#DB
...((	chr15:40488789-40489048(+)$1	1	17	22	15.0000
.)...	chr17:30678703-30678917(+)$1	1	128	133	15.0000
.....	chr14:102551102-102551328(-)$1	1	35	40	15.0000
.....	chr10:75910929-75911208(+)$1	1	16	21	15.0000
)))))	chr20:31388545-31388808(+)$1	1	98	103	15.0000
(((((	chr14:39648330-39648545(+)$1	1	9	14	15.0000
.....	chr4:174253059-174253274(-)$1	1	2	7	15.0000
.....	chrX:153184361-153184603(-)$1	1	201	206	15.0000
.....	chr1:46073308-46073554(+)$1	1	28	33	15.0000
.....	chr21:33975399-33975675(-)$1	1	134	139	15.0000
)....	chr12:133240600-133240834(-)$1	1	187	192	15.0000
.....	chr5:70779602-70779820(+)$1	1	81	86	15.0000
.....	chr17:48823232-48823451(+)$1	1	20	25	15.0000
((...	chr12:132241042-132241294(+)$1	1	53	58	15.0000
.((.(	chr2:71661815-71662105(+)$1	1	101	106	15.0000
...))	chr14:105916289-105916534(+)$1	1	113	118	15.0000
)))))	chr19:30499810-30500042(+)$1	1	129	134	15.0000
).).)	chr19:10670885-10671181(-)$1	1	150	155	15.0000
(((((	chr6:32947533-32947788(+)$1	1	23	28	15.0000
....)	chr1:166810130-166810435(+)$1	1	102	107	15.0000
.....	chr19:13054616-13054825(+)$1	1	63	68	15.0000
).)).	chr8:92083268-92083631(+)$1	1	113	118	15.0000
).)))	chr11:62458000-62458264(-)$1	1	150	155	15.0000
.....	chr3:184043253-184043509(+)$1	1	86	91	15.0000
...))	chr3:132379325-132379615(+)$1	1	178	183	15.0000
.....	chr1:156163814-156164122(+)$1	1	106	111	15.0000
((..(	chr9:36375832-36376185(-)$1	1	64	69	15.0000
..)))	chr7:102964843-102965083(-)$1	1	39	44	15.0000
)))))	chr2:128051084-128051391(-)$1	1	101	106	15.0000
(((((	chr19:39936350-39936565(+)$1	1	176	181	15.0000
)))))	chr2:20451230-20451514(-)$1	1	114	119	15.0000
))..)	chr8:101315337-101315673(-)$1	1	102	107	15.0000
.))))	chr6:64394289-64394586(+)$1	1	24	29	15.0000
..)).	chr3:47125360-47125637(-)$1	1	122	127	15.0000
)))))	chr6:31726443-31726731(+)$1	1	105	110	15.0000
)))..	chr5:137505933-137506191(-)$1	1	106	111	15.0000
(((..	chr3:48668328-48668585(-)$1	1	114	119	15.0000
(((((	chr22:30734802-30735126(-)$1	1	234	239	15.0000
..)))	chr22:18389433-18389749(-)$1	1	23	28	15.0000
(((..	chr16:69681300-69681555(+)$1	1	82	87	15.0000
.))).	chr14:102551213-102551427(-)$1	1	134	139	15.0000
)))))	chr3:182683294-182683609(-)$1	1	250	255	15.0000
((...	chr3:49017764-49018030(+)$1	1	80	85	15.0000
.((((	chr11:93470193-93470418(-)$1	1	103	108	15.0000
...((	chr2:132021306-132021543(+)$1	1	70	75	15.0000
..)))	chr20:1433574-1433810(-)$1	1	48	53	15.0000
)))).	chr16:69402178-69402450(-)$1	1	116	121	15.0000
(((..	chr11:27360025-27360283(-)$1	1	66	71	15.0000
))...	chr10:103920284-103920553(+)$1	1	106	111	15.0000
(....	chr19:10828720-10828990(+)$1	1	216	221	15.0000
.....	chr3:184049227-184049479(+)$1	1	234	239	15.0000
((.((	chrX:11779534-11779802(+)$1	1	14	19	15.0000
)))))	chr17:26906926-26907173(-)$1	1	211	216	15.0000
))...	chr20:30327074-30327296(+)$1	1	87	92	15.0000
)))))	chr5:122717710-122717971(-)$1	1	124	129	15.0000
.....	chr19:10764978-10765240(+)$1	1	164	169	15.0000
((...	chr17:42475981-42476250(-)$1	1	23	28	15.0000
.....	chr5:131939066-131939280(+)$1	1	22	27	15.0000
...(.	chr3:121415126-121415418(-)$1	1	72	77	15.0000
(....	chr3:44893212-44893458(+)$1	1	70	75	15.0000
(((.(	chr22:35659055-35659319(+)$1	1	110	115	15.0000
(((((	chr15:89859526-89859768(+)$1	1	12	17	15.0000
(....	chr2:189156575-189156877(+)$1	1	106	111	15.0000
((...	chr22:29945014-29945247(-)$1	1	68	73	15.0000
))...	chr19:10261968-10262270(-)$1	1	142	147	15.0000
...))	chr5:133496592-133496863(-)$1	1	87	92	15.0000
....)	chr8:33355849-33356114(+)$1	1	130	135	15.0000
.....	chr6:26469136-26469405(+)$1	1	253	258	15.0000
))))(	chr2:113416391-113416677(+)$1	1	69	74	15.0000
)))))	chr19:10468024-10468276(-)$1	1	124	129	15.0000
.....	chr11:129992165-129992428(+)$1	1	59	64	15.0000
.....	chr16:2050977-2051217(-)$1	1	26	31	15.0000
.....	chr17:79804251-79804474(-)$1	1	34	39	15.0000
.....	chr16:89349581-89349829(-)$1	1	134	139	15.0000
..((.	chr12:112845942-112846163(-)$1	1	171	176	15.0000
.....	chr6:30711050-30711368(-)$1	1	97	102	15.0000

#PSSM
G : 0.89	g : 0.10	
A : 0.89	a : 0.10	
A : 0.90	a : 0.09	
G : 0.90	g : 0.09	
A : 0.90	a : 0.09	

#score	1140.0000000000005
#seq	76
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_transcript_m2_run1.nuc.txt

#NT
GGUUGGG	chrX:41193692-41193942(+)$1	250	20	27	15.4545
GGGUGGG	chr12:56554868-56555123(+)$1	255	93	100	15.9090
GGGUGGG	chr2:131968769-131969054(+)$1	285	29	36	15.9090
GGCGGGG	chr19:806798-807051(+)$1	253	105	112	14.8181
GGGUGGG	chr6:43745756-43745983(+)$1	227	57	64	15.9090
GGCCGGG	chr21:40720479-40720712(-)$1	233	66	73	14.9090
GGCGGGG	chr9:86594450-86594731(-)$1	281	31	38	14.8181
GGGUGGG	chr5:43483682-43484015(-)$1	333	90	97	15.9090
GGCUGGG	chrX:12994441-12994697(+)$1	256	70	77	18.3636
ggcgggg	chr19:10407044-10407264(+)$1	220	1	8	14.8181
GGCUGGG	chr20:5591209-5591540(-)$1	331	240	247	18.3636
GGCUGGG	chr16:88799126-88799366(-)$1	240	117	124	18.3636
ggcuggg	chr2:132038631-132038895(+)$1	264	214	221	18.3636
GGGUGGG	chr6:43745783-43746080(+)$1	297	30	37	15.9090
GGGUGGG	chr2:65496335-65496592(+)$1	257	92	99	15.9090
GGCUGGG	chr1:151373306-151373598(+)$1	292	110	117	18.3636
GGCUGGG	chr1:1256077-1256365(-)$1	288	17	24	18.3636
GGAUGGG	chr19:2270024-2270227(+)$1	203	61	68	15.2727
GGCUGGG	chr10:124914102-124914367(+)$1	265	98	105	18.3636
GGCUGGG	chr22:50032850-50033118(-)$1	268	46	53	18.3636
GGCUGGG	chr17:41464612-41464880(-)$1	268	24	31	18.3636
GGCUGGG	chr17:26940991-26941300(-)$1	309	113	120	18.3636
GGCUGGG	chr11:72414344-72414560(-)$1	216	43	50	18.3636
GGCUGGG	chr7:1474538-1474785(-)$1	247	72	79	18.3636
GGGUGGG	chr7:139056195-139056448(+)$1	253	96	103	15.9090
ggcgggg	chr19:10406926-10407190(+)$1	264	119	126	14.8181
GGCCGGG	chr17:62501999-62502240(-)$1	241	33	40	14.9090
GGGUGGG	chr10:70097697-70097963(+)$1	266	207	214	15.9090
GGCUGGG	chr19:18682642-18682916(+)$1	274	184	191	18.3636
GGCUGGG	chr6:43746033-43746273(+)$1	240	120	127	18.3636
GGGUGGG	chr1:35647628-35647884(-)$1	256	109	116	15.9090
GGUUGGG	chr4:100870965-100871245(-)$1	280	12	19	15.4545
GGCUGGG	chr17:80050092-80050317(-)$1	225	49	56	18.3636
GGGUGGG	chr6:43745707-43745956(+)$1	249	106	113	15.9090
GGCGGGG	chr17:73775409-73775671(-)$1	262	14	21	14.8181
GGCUGGG	chr2:38977641-38977917(-)$1	276	67	74	18.3636
GGCUGGG	chr5:39073971-39074265(-)$1	294	112	119	18.3636
GGUUGGG	chr21:44527306-44527608(-)$1	302	71	78	15.4545
GGCCGGG	chr16:88725044-88725303(-)$1	259	16	23	14.9090
GGCUGGG	chr7:5569695-5569970(-)$1	275	150	157	18.3636
ggcuggg	chr17:46052349-46052635(+)$1	286	62	69	18.3636
GGCUGGG	chr2:97535375-97535637(-)$1	262	127	134	18.3636
GGCUGGG	chr6:31503429-31503671(-)$1	242	102	109	18.3636
GGCUGGG	chr22:50037922-50038173(-)$1	251	136	143	18.3636
GGAUGGG	chr15:91454233-91454476(+)$1	243	23	30	15.2727
GGUUGGG	chr1:59247156-59247431(-)$1	275	110	117	15.4545
GGCCGGG	chr1:220383868-220384128(-)$1	260	116	123	14.9090
GGCCGGG	chr2:178077543-178077800(+)$1	257	127	134	14.9090
GGCUGGG	chr7:5569522-5569794(-)$1	272	117	124	18.3636
GGCUGGG	chr11:568100-568380(-)$1	280	107	114	18.3636
GGCCGGG	chr17:62501631-62501936(-)$1	305	103	110	14.9090
GGUUGGG	chr19:2270607-2270815(+)$1	208	96	103	15.4545
GGAUGGG	chr6:43745896-43746139(+)$1	243	12	19	15.2727
ggcuggg	chr16:2809954-2810226(+)$1	272	85	92	18.3636

#otherMatches

#Struct PSSM
mma]eee	chr7:6066100-6066390(-)$1	290	121	128	18.3636
dddd[dd	chrX:41193692-41193942(+)$1	250	20	27	15.4545
gggggge	chr12:56554868-56555123(+)$1	255	93	100	15.9090
EEELLLB	chr2:131968769-131969054(+)$1	285	29	36	15.9090
[ffffff	chr19:806798-807051(+)$1	253	105	112	14.8181
BB{BB{E	chr6:43745756-43745983(+)$1	227	57	64	15.9090
FFFFF{A	chr21:40720479-40720712(-)$1	233	66	73	14.9090
ccc:EEE	chr9:86594450-86594731(-)$1	281	31	38	14.8181
[eeeee[	chr5:43483682-43484015(-)$1	333	90	97	15.9090
dd22ggg	chrX:12994441-12994697(+)$1	256	70	77	18.3636
FFFFFLL	chr19:10407044-10407264(+)$1	220	1	8	14.8181
}EEEEEY	chr20:5591209-5591540(-)$1	331	240	247	18.3636
mmmmeee	chr16:88799126-88799366(-)$1	240	117	124	18.3636
ccclllc	chr2:132038631-132038895(+)$1	264	214	221	18.3636
ddddFFF	chr6:43745783-43746080(+)$1	297	30	37	15.9090
ggg]fff	chr2:65496335-65496592(+)$1	257	92	99	15.9090
JJJJJJJ	chr1:151373306-151373598(+)$1	292	110	117	18.3636
ddddnnn	chr1:1256077-1256365(-)$1	288	17	24	18.3636
ggg]bb]	chr19:2270024-2270227(+)$1	203	61	68	15.2727
CCKKEEE	chr10:124914102-124914367(+)$1	265	98	105	18.3636
bb]dddd	chr22:50032850-50033118(-)$1	268	46	53	18.3636
{FFFFFF	chr17:41464612-41464880(-)$1	268	24	31	18.3636
mccc000	chr17:26940991-26941300(-)$1	309	113	120	18.3636
EFFFFFF	chr11:72414344-72414560(-)$1	216	43	50	18.3636
[ccc[cc	chr7:1474538-1474785(-)$1	247	72	79	18.3636
b!!iiii	chr7:139056195-139056448(+)$1	253	96	103	15.9090
[cccnnn	chr19:10406926-10407190(+)$1	264	119	126	14.8181
[ffffff	chr17:62501999-62502240(-)$1	241	33	40	14.9090
iiiiiii	chr10:70097697-70097963(+)$1	266	207	214	15.9090
oddddcc	chr19:18682642-18682916(+)$1	274	184	191	18.3636
ccc[ggg	chr6:43746033-43746273(+)$1	240	120	127	18.3636
FFFFEEE	chr1:35647628-35647884(-)$1	256	109	116	15.9090
bqqqqqq	chr4:100870965-100871245(-)$1	280	12	19	15.4545
[ccc[dd	chr17:80050092-80050317(-)$1	225	49	56	18.3636
====:::	chr6:43745707-43745956(+)$1	249	106	113	15.9090
:EEEEEJ	chr17:73775409-73775671(-)$1	262	14	21	14.8181
GGG{CCC	chr2:38977641-38977917(-)$1	276	67	74	18.3636
[a!!bb[	chr5:39073971-39074265(-)$1	294	112	119	18.3636
##ccc[b	chr21:44527306-44527608(-)$1	302	71	78	15.4545
{CCC:::	chr16:88725044-88725303(-)$1	259	16	23	14.9090
====::g	chr7:5569695-5569970(-)$1	275	150	157	18.3636
eee[a[d	chr17:46052349-46052635(+)$1	286	62	69	18.3636
ddd]a]c	chr2:97535375-97535637(-)$1	262	127	134	18.3636
22ddddC	chr6:31503429-31503671(-)$1	242	102	109	18.3636
CC}DDDD	chr22:50037922-50038173(-)$1	251	136	143	18.3636
=======	chr15:91454233-91454476(+)$1	243	23	30	15.2727
ffffff[	chr1:59247156-59247431(-)$1	275	110	117	15.4545
ggggggg	chr1:220383868-220384128(-)$1	260	116	123	14.9090
ffffff[	chr2:178077543-178077800(+)$1	257	127	134	14.9090
ooooodd	chr7:5569522-5569794(-)$1	272	117	124	18.3636
}EEEEE:	chr11:568100-568380(-)$1	280	107	114	18.3636
LGGGGGG	chr17:62501631-62501936(-)$1	305	103	110	14.9090
hhhhhhh	chr19:2270607-2270815(+)$1	208	96	103	15.4545
IIIIIII	chr6:43745896-43746139(+)$1	243	12	19	15.2727
33bb]cc	chr16:2809954-2810226(+)$1	272	85	92	18.3636

#DB
..).)))	chr7:6066100-6066390(-)$1	1	121	128	18.3636
((((.((	chrX:41193692-41193942(+)$1	1	20	27	15.4545
)))))))	chr12:56554868-56555123(+)$1	1	93	100	15.9090
(((...(	chr2:131968769-131969054(+)$1	1	29	36	15.9090
.((((((	chr19:806798-807051(+)$1	1	105	112	14.8181
((.((.(	chr6:43745756-43745983(+)$1	1	57	64	15.9090
(((((.(	chr21:40720479-40720712(-)$1	1	66	73	14.9090
))).(((	chr9:86594450-86594731(-)$1	1	31	38	14.8181
.(((((.	chr5:43483682-43484015(-)$1	1	90	97	15.9090
))..)))	chrX:12994441-12994697(+)$1	1	70	77	18.3636
(((((..	chr19:10407044-10407264(+)$1	1	1	8	14.8181
.))))).	chr20:5591209-5591540(-)$1	1	240	247	18.3636
....)))	chr16:88799126-88799366(-)$1	1	117	124	18.3636
(((...)	chr2:132038631-132038895(+)$1	1	214	221	18.3636
))))(((	chr6:43745783-43746080(+)$1	1	30	37	15.9090
))).)))	chr2:65496335-65496592(+)$1	1	92	99	15.9090
(((((((	chr1:151373306-151373598(+)$1	1	110	117	18.3636
((((...	chr1:1256077-1256365(-)$1	1	17	24	18.3636
))).)).	chr19:2270024-2270227(+)$1	1	61	68	15.2727
((..(((	chr10:124914102-124914367(+)$1	1	98	105	18.3636
)).))))	chr22:50032850-50033118(-)$1	1	46	53	18.3636
.((((((	chr17:41464612-41464880(-)$1	1	24	31	18.3636
.)))...	chr17:26940991-26941300(-)$1	1	113	120	18.3636
(((((((	chr11:72414344-72414560(-)$1	1	43	50	18.3636
.(((.((	chr7:1474538-1474785(-)$1	1	72	79	18.3636
(..((((	chr7:139056195-139056448(+)$1	1	96	103	15.9090
.(((...	chr19:10406926-10407190(+)$1	1	119	126	14.8181
.((((((	chr17:62501999-62502240(-)$1	1	33	40	14.9090
(((((((	chr10:70097697-70097963(+)$1	1	207	214	15.9090
.))))))	chr19:18682642-18682916(+)$1	1	184	191	18.3636
(((.(((	chr6:43746033-43746273(+)$1	1	120	127	18.3636
))))(((	chr1:35647628-35647884(-)$1	1	109	116	15.9090
(......	chr4:100870965-100871245(-)$1	1	12	19	15.4545
.(((.((	chr17:80050092-80050317(-)$1	1	49	56	18.3636
))))...	chr6:43745707-43745956(+)$1	1	106	113	15.9090
.((((((	chr17:73775409-73775671(-)$1	1	14	21	14.8181
(((.(((	chr2:38977641-38977917(-)$1	1	67	74	18.3636
.(..((.	chr5:39073971-39074265(-)$1	1	112	119	18.3636
..(((.(	chr21:44527306-44527608(-)$1	1	71	78	15.4545
.(((...	chr16:88725044-88725303(-)$1	1	16	23	14.9090
))))..(	chr7:5569695-5569970(-)$1	1	150	157	18.3636
(((.(.(	chr17:46052349-46052635(+)$1	1	62	69	18.3636
))).).)	chr2:97535375-97535637(-)$1	1	127	134	18.3636
..)))))	chr6:31503429-31503671(-)$1	1	102	109	18.3636
)).))))	chr22:50037922-50038173(-)$1	1	136	143	18.3636
(((((((	chr15:91454233-91454476(+)$1	1	23	30	15.2727
((((((.	chr1:59247156-59247431(-)$1	1	110	117	15.4545
(((((((	chr1:220383868-220384128(-)$1	1	116	123	14.9090
((((((.	chr2:178077543-178077800(+)$1	1	127	134	14.9090
.....))	chr7:5569522-5569794(-)$1	1	117	124	18.3636
.))))).	chr11:568100-568380(-)$1	1	107	114	18.3636
.((((((	chr17:62501631-62501936(-)$1	1	103	110	14.9090
)))))))	chr19:2270607-2270815(+)$1	1	96	103	15.4545
(((((((	chr6:43745896-43746139(+)$1	1	12	19	15.2727
..)).))	chr16:2809954-2810226(+)$1	1	85	92	18.3636

#PSSM
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	
C : 0.58	G : 0.18	U : 0.09	c : 0.09	A : 0.05	
U : 0.74	C : 0.10	G : 0.05	u : 0.05	g : 0.03	
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	

#score	923.1818181818186
#seq	55
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_CDS_m2_run2.nuc.txt

#NT
UCUGGCCCGG	chr6:26021825-26022085(+)$1	260	191	201	15.3846
GCCGGCCCCG	chr12:49524980-49525274(-)$1	294	82	92	11.9230
GCUGGCCGCG	chr2:98262431-98262750(+)$1	319	150	160	14.8076
GCGGGCCCGG	chr12:49658768-49659070(+)$1	302	249	259	15.6730
GCUGGCGACG	chr7:22862287-22862557(-)$1	270	34	44	11.8269
GCGGACCUGG	chr6:144416512-144416800(-)$1	288	60	70	11.4423
GCUGGUCGGG	chr5:68462855-68463201(+)$1	346	171	181	14.2307
GCUGGUCAAG	chr17:56429328-56429653(-)$1	325	216	226	11.2500
GCUGCGCAGG	chr5:177019109-177019432(+)$1	323	83	93	11.2500
UCUggccggg	chr12:6976647-6976905(+)$1	258	220	230	16.0576
GCUUGACAGG	chr11:63742045-63742316(+)$1	271	138	148	10.3846
UCGGGCCGGG	chr6:27775856-27776113(+)$1	257	190	200	13.8461
GUUGGCCGUG	chr6:26217077-26217341(+)$1	264	206	216	11.0576
GCUGGCCCCG	chr8:125551267-125551581(+)$1	314	83	93	14.1346
GUUGGCCAGG	chr12:49523373-49523606(-)$1	233	122	132	15.8653
UCAGGCCUGG	chr11:5290928-5291136(-)$1	208	2	12	12.8846
GCUGGCGAGA	chr8:126010673-126010976(+)$1	303	141	151	10.9615
GCCGCCCGGG	chr21:35287931-35288190(-)$1	259	108	118	12.4038
GGUGGCUAGG	chr7:10979563-10979855(-)$1	292	121	131	12.0192
GUUGGCCAGG	chr12:49663147-49663376(+)$1	229	121	131	15.8653
UCAGGCCUGG	chr11:5290936-5291159(-)$1	223	25	35	12.8846
UCUGGCCAGG	chr8:100904081-100904336(-)$1	255	128	138	17.0192
GCGGUCCUGG	chr1:45478473-45478722(+)$1	249	10	20	11.5384
GGUGGCAAGG	chr12:112846355-112846560(-)$1	205	169	179	12.3076
GCUGGCCAGG	chr7:75931945-75932194(+)$1	249	232	242	19.5192
GUCGGCCGGG	chr12:6643913-6644128(+)$1	215	16	26	12.6923
GCUGGCCAAG	chr6:27775504-27775784(-)$1	280	108	118	15.5769
gcgggccaug	chr12:6976600-6976847(+)$1	247	12	22	13.4615
GCGGGCCCGG	chr15:90777004-90777263(-)$1	259	16	26	15.6730
GGUGGCAAGG	chr12:112846323-112846555(-)$1	232	164	174	12.3076
GAAGGCCAGG	chr9:113018606-113018926(-)$1	320	250	260	13.0769
GCUGGCUUGG	chr15:45003618-45003913(+)$1	295	4	14	13.9423
GCCGGCCGGG	chr9:35072246-35072534(-)$1	288	161	171	16.3461
GCGGGCCCGG	chr12:131356521-131356773(+)$1	252	163	173	15.6730
ACCGGCCAGG	chr1:110950106-110950351(-)$1	245	225	235	14.1346
GGCGGCCGGG	chr19:49999594-49999824(+)$1	230	106	116	12.7884
UCUGGCCAGG	chr17:26902392-26902664(-)$1	272	42	52	17.0192
GCUCGCCCGG	chr5:140026967-140027302(-)$1	335	210	220	13.1730
ACGGGCCGGG	chr19:8386439-8386677(+)$1	238	65	75	13.1730
UCCGGCCUGG	chr11:64084824-64085089(-)$1	265	62	72	13.1730
ACUGGCAAGG	chr19:50000350-50000565(+)$1	215	166	176	12.6923
GCUGGCCAGG	chr19:8386336-8386554(+)$1	218	107	117	19.5192
UCAGGCCUGG	chr11:5290985-5291212(-)$1	227	78	88	12.8846
GCUGCGCAGG	chr12:131357028-131357263(+)$1	235	113	123	11.2500
GGCGGCAAGG	chr6:27860776-27861050(-)$1	274	144	154	10.0961
GCUGCCCAGG	chr1:19923404-19923696(+)$1	292	258	268	15.5769
GCUGUCCAGC	chrX:153060068-153060309(+)$1	241	115	125	10.8653
GCUGGCCGGC	chr6:26124429-26124672(+)$1	243	225	235	14.0384
UCUGGCAGGG	chr11:67351534-67351741(+)$1	207	119	129	12.4038
ACUGGCCAGG	chr5:1801446-1801708(+)$1	262	208	218	16.3461
GCAGGCCGGG	chr15:40331192-40331460(-)$1	268	2	12	16.0576

#otherMatches

#Struct PSSM
bb!!cccqqq	chr6:26285544-26285845(-)$1	301	121	131	12.2115
rrccc]eeee	chr6:26021825-26022085(+)$1	260	191	201	15.3846
:HHHHHHHHJ	chr12:49524980-49525274(-)$1	294	82	92	11.9230
%%%ggggggg	chr2:98262431-98262750(+)$1	319	150	160	14.8076
==cccdddd2	chr12:49658768-49659070(+)$1	302	249	259	15.6730
cc[dddd[cc	chr7:22862287-22862557(-)$1	270	34	44	11.8269
gggggrrrrr	chr6:144416512-144416800(-)$1	288	60	70	11.4423
hhhhhhh]ff	chr5:68462855-68463201(+)$1	346	171	181	14.2307
[ffffff!!c	chr17:56429328-56429653(-)$1	325	216	226	11.2500
[ddddmmmmd	chr5:177019109-177019432(+)$1	323	83	93	11.2500
2dddd333ff	chr12:6976647-6976905(+)$1	258	220	230	16.0576
DDD}BBHHHH	chr11:63742045-63742316(+)$1	271	138	148	10.3846
b22cccgggg	chr6:27775856-27776113(+)$1	257	190	200	13.8461
4ccc]ccc]b	chr6:26217077-26217341(+)$1	264	206	216	11.0576
ddddFFFFFF	chr8:125551267-125551581(+)$1	314	83	93	14.1346
gggg:fffff	chr12:49523373-49523606(-)$1	233	122	132	15.8653
CCCKKCCC:d	chr11:5290928-5291136(-)$1	208	2	12	12.8846
]bb]bb4444	chr8:126010673-126010976(+)$1	303	141	151	10.9615
ccc!!hhhhh	chr21:35287931-35288190(-)$1	259	108	118	12.4038
FEEEEE{EEE	chr7:10979563-10979855(-)$1	292	121	131	12.0192
gggg:fffff	chr12:49663147-49663376(+)$1	229	121	131	15.8653
eeeeee[ccc	chr11:5290936-5291159(-)$1	223	25	35	12.8846
mmmeeeee]g	chr8:100904081-100904336(-)$1	255	128	138	17.0192
!eeeeellle	chr1:45478473-45478722(+)$1	249	10	20	11.5384
22dddd:JJJ	chr12:112846355-112846560(-)$1	205	169	179	12.3076
CCCCCCYYDD	chr7:75931945-75932194(+)$1	249	232	242	19.5192
eeecccmmmm	chr12:6643913-6644128(+)$1	215	16	26	12.6923
dd[ccclllc	chr6:27775504-27775784(-)$1	280	108	118	15.5769
E{BBIIIIII	chr12:6976600-6976847(+)$1	247	12	22	13.4615
KKGGGGGGG{	chr15:90777004-90777263(-)$1	259	16	26	15.6730
22dddd:JJJ	chr12:112846323-112846555(-)$1	232	164	174	12.3076
555ccceeee	chr9:113018606-113018926(-)$1	320	250	260	13.0769
::::IIIIII	chr15:45003618-45003913(+)$1	295	4	14	13.9423
ccc]a]dddd	chr9:35072246-35072534(-)$1	288	161	171	16.3461
EEEEgggggg	chr12:131356521-131356773(+)$1	252	163	173	15.6730
]bb]ccc::H	chr1:110950106-110950351(-)$1	245	225	235	14.1346
DDD:ddddoo	chr19:49999594-49999824(+)$1	230	106	116	12.7884
ddddcccooo	chr17:26902392-26902664(-)$1	272	42	52	17.0192
ddeeeee[cc	chr5:140026967-140027302(-)$1	335	210	220	13.1730
nnncccaddd	chr19:8386439-8386677(+)$1	238	65	75	13.1730
MMMMEEEEEe	chr11:64084824-64085089(-)$1	265	62	72	13.1730
"bbppppppp	chr19:50000350-50000565(+)$1	215	166	176	12.6923
dddd22bb]c	chr19:8386336-8386554(+)$1	218	107	117	19.5192
DDYYA}EEEE	chr11:5290985-5291212(-)$1	227	78	88	12.8846
cccc[bb[cc	chr12:131357028-131357263(+)$1	235	113	123	11.2500
EEEEBBKKCC	chr6:27860776-27861050(-)$1	274	144	154	10.0961
oooccc22dd	chr1:19923404-19923696(+)$1	292	258	268	15.5769
d$$$$$dddd	chrX:153060068-153060309(+)$1	241	115	125	10.8653
FEEEEECCC~	chr6:26124429-26124672(+)$1	243	225	235	14.0384
EEEE}AEEEE	chr11:67351534-67351741(+)$1	207	119	129	12.4038
!cccccc[cc	chr5:1801446-1801708(+)$1	262	208	218	16.3461
:::ddddccc	chr15:40331192-40331460(-)$1	268	2	12	16.0576

#DB
((..(((...	chr6:26285544-26285845(-)$1	1	121	131	12.2115
..))).))))	chr6:26021825-26022085(+)$1	1	191	201	15.3846
.))))))))(	chr12:49524980-49525274(-)$1	1	82	92	11.9230
...(((((((	chr2:98262431-98262750(+)$1	1	150	160	14.8076
))))))))).	chr12:49658768-49659070(+)$1	1	249	259	15.6730
((.((((.((	chr7:22862287-22862557(-)$1	1	34	44	11.8269
(((((.....	chr6:144416512-144416800(-)$1	1	60	70	11.4423
))))))).))	chr5:68462855-68463201(+)$1	1	171	181	14.2307
.((((((..(	chr17:56429328-56429653(-)$1	1	216	226	11.2500
.((((....)	chr5:177019109-177019432(+)$1	1	83	93	11.2500
.))))...))	chr12:6976647-6976905(+)$1	1	220	230	16.0576
))).))((((	chr11:63742045-63742316(+)$1	1	138	148	10.3846
)..)))))))	chr6:27775856-27776113(+)$1	1	190	200	13.8461
.))).))).)	chr6:26217077-26217341(+)$1	1	206	216	11.0576
))))((((((	chr8:125551267-125551581(+)$1	1	83	93	14.1346
)))).(((((	chr12:49523373-49523606(-)$1	1	122	132	15.8653
(((..(((.(	chr11:5290928-5291136(-)$1	1	2	12	12.8846
.)).))....	chr8:126010673-126010976(+)$1	1	141	151	10.9615
(((..(((((	chr21:35287931-35288190(-)$1	1	108	118	12.4038
((((((.(((	chr7:10979563-10979855(-)$1	1	121	131	12.0192
)))).(((((	chr12:49663147-49663376(+)$1	1	121	131	15.8653
((((((.(((	chr11:5290936-5291159(-)$1	1	25	35	12.8846
...))))).)	chr8:100904081-100904336(-)$1	1	128	138	17.0192
.(((((...)	chr1:45478473-45478722(+)$1	1	10	20	11.5384
..)))).)))	chr12:112846355-112846560(-)$1	1	169	179	12.3076
))))))..))	chr7:75931945-75932194(+)$1	1	232	242	19.5192
((((((....	chr12:6643913-6644128(+)$1	1	16	26	12.6923
((.(((...)	chr6:27775504-27775784(-)$1	1	108	118	15.5769
(.((((((((	chr12:6976600-6976847(+)$1	1	12	22	13.4615
..(((((((.	chr15:90777004-90777263(-)$1	1	16	26	15.6730
..)))).)))	chr12:112846323-112846555(-)$1	1	164	174	12.3076
...)))((((	chr9:113018606-113018926(-)$1	1	250	260	13.0769
....((((((	chr15:45003618-45003913(+)$1	1	4	14	13.9423
))).).))))	chr9:35072246-35072534(-)$1	1	161	171	16.3461
))))((((((	chr12:131356521-131356773(+)$1	1	163	173	15.6730
.)).)))..)	chr1:110950106-110950351(-)$1	1	225	235	14.1346
(((.((((..	chr19:49999594-49999824(+)$1	1	106	116	12.7884
(((((((...	chr17:26902392-26902664(-)$1	1	42	52	17.0192
(((((((.((	chr5:140026967-140027302(-)$1	1	210	220	13.1730
...))))(((	chr19:8386439-8386677(+)$1	1	65	75	13.1730
....((((((	chr11:64084824-64085089(-)$1	1	62	72	13.1730
.((.......	chr19:50000350-50000565(+)$1	1	166	176	12.6923
))))..)).)	chr19:8386336-8386554(+)$1	1	107	117	19.5192
))..).))))	chr11:5290985-5291212(-)$1	1	78	88	12.8846
((((.((.((	chr12:131357028-131357263(+)$1	1	113	123	11.2500
))))((..((	chr6:27860776-27861050(-)$1	1	144	154	10.0961
...)))..))	chr1:19923404-19923696(+)$1	1	258	268	15.5769
(.....((((	chrX:153060068-153060309(+)$1	1	115	125	10.8653
))))))))).	chr6:26124429-26124672(+)$1	1	225	235	14.0384
)))).)((((	chr11:67351534-67351741(+)$1	1	119	129	12.4038
.((((((.((	chr5:1801446-1801708(+)$1	1	208	218	16.3461
...(((((((	chr15:40331192-40331460(-)$1	1	2	12	16.0576

#PSSM
G : 0.69	U : 0.21	A : 0.07	g : 0.01	
C : 0.78	G : 0.09	U : 0.07	c : 0.01	A : 0.01	
U : 0.59	C : 0.15	G : 0.13	A : 0.09	g : 0.01	
G : 0.92	g : 0.03	U : 0.01	C : 0.01	
G : 0.82	C : 0.07	g : 0.03	U : 0.03	A : 0.01	
C : 0.86	U : 0.03	G : 0.03	c : 0.03	A : 0.01	
C : 0.78	A : 0.09	G : 0.03	c : 0.03	U : 0.03	
A : 0.44	G : 0.24	C : 0.13	U : 0.13	g : 0.01	a : 0.01	
G : 0.80	C : 0.07	U : 0.03	A : 0.03	g : 0.01	u : 0.01	
G : 0.90	g : 0.03	C : 0.03	A : 0.01	

#score	712.6923076923081
#seq	52
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_UTR_m1_run2.nuc.txt

#NT
GGAGG	chr11:61583478-61583750(-)$1	272	56	61	15.0000
GGAGG	chr17:46656335-46656607(-)$1	272	96	101	15.0000
GGAGG	chr22:19951923-19952171(+)$1	248	18	23	15.0000
GGAGG	chr3:49050518-49050775(+)$1	257	39	44	15.0000
ggagg	chr3:20081761-20082033(+)$1	272	56	61	15.0000
GGAGG	chr13:113863071-113863331(+)$1	260	4	9	15.0000
GGAGG	chr6:32938751-32939002(+)$1	251	2	7	15.0000
GGAGG	chr7:116594345-116594614(+)$1	269	85	90	15.0000
GGAGG	chr17:46655730-46655996(-)$1	266	29	34	15.0000
GGAGG	chr11:118965239-118965471(-)$1	232	131	136	15.0000
GGAGG	chr17:27717611-27717858(+)$1	247	30	35	15.0000
GGAGG	chr22:46508411-46508701(+)$1	290	161	166	15.0000
GGAGG	chrX:153686577-153686833(+)$1	256	181	186	15.0000
GGAGG	chr17:8108202-8108422(-)$1	220	193	198	15.0000
GGAGG	chr12:62997009-62997281(+)$1	272	154	159	15.0000
ggagg	chr6:86352571-86352821(-)$1	250	20	25	15.0000
GGAGG	chr17:30801680-30801883(+)$1	203	154	159	15.0000
GGAGG	chr3:49057855-49058094(-)$1	239	140	145	15.0000
GGAGG	chr19:2270187-2270442(+)$1	255	10	15	15.0000
ggagg	chr22:46508745-46508979(+)$1	234	161	166	15.0000
GGAGG	chr22:46508558-46508792(+)$1	234	14	19	15.0000
GGAGG	chr17:27717512-27717774(+)$1	262	129	134	15.0000
GGAGG	chr19:46142162-46142429(-)$1	267	17	22	15.0000
GGAGG	chr19:46142229-46142544(-)$1	315	132	137	15.0000
GGAGG	chr17:27717311-27717662(+)$1	351	31	36	15.0000
GGAGG	chr13:113863745-113864018(+)$1	273	2	7	15.0000
GGAGG	chr8:102217336-102217599(-)$1	263	256	261	15.0000
GGAGG	chr3:20081610-20081841(+)$1	231	56	61	15.0000
GGAGG	chr22:46505757-46506000(+)$1	243	115	120	15.0000
GGAGG	chr2:242707056-242707337(+)$1	281	6	11	15.0000
GGAGG	chr19:2429949-2430206(-)$1	257	59	64	15.0000
GGAGG	chr19:46142015-46142254(-)$1	239	51	56	15.0000
ggagg	chr2:97535541-97535806(-)$1	265	60	65	15.0000
GGAGG	chr19:18111975-18112272(+)$1	297	34	39	15.0000
GGAGG	chr5:134363648-134363982(-)$1	334	241	246	15.0000
GGAGG	chr2:85772094-85772349(+)$1	255	96	101	15.0000
GGAGG	chr8:41513164-41513391(-)$1	227	172	177	15.0000
GGAGG	chr1:2121218-2121441(-)$1	223	147	152	15.0000
GGAGG	chr20:62572717-62572971(-)$1	254	123	128	15.0000
GGAGG	chr22:21983337-21983582(-)$1	245	10	15	15.0000
GGAGG	chr19:40741696-40741934(-)$1	238	200	205	15.0000
GGAGG	chr11:64073737-64073985(+)$1	248	55	60	15.0000
GGAGG	chr9:131910360-131910617(+)$1	257	147	152	15.0000
GGAGG	chr6:32938575-32938814(+)$1	239	10	15	15.0000
GGAGG	chr1:2123469-2123748(-)$1	279	160	165	15.0000
GGAGG	chr3:49057804-49058052(-)$1	248	98	103	15.0000
GGAGG	chr10:70287015-70287285(-)$1	270	228	233	15.0000
GGAGG	chr3:48229392-48229658(-)$1	266	31	36	15.0000
GGAGG	chr17:72858658-72858970(-)$1	312	77	82	15.0000
GGAGG	chr19:1878684-1878932(-)$1	248	54	59	15.0000

#otherMatches

#Struct PSSM
BBKKJ	chr9:134269414-134269692(+)$1	278	0	5	15.0000
2dddd	chr11:61583478-61583750(-)$1	272	56	61	15.0000
EEEEE	chr17:46656335-46656607(-)$1	272	96	101	15.0000
:::::	chr22:19951923-19952171(+)$1	248	18	23	15.0000
eeee:	chr3:49050518-49050775(+)$1	257	39	44	15.0000
D{A{F	chr3:20081761-20082033(+)$1	272	56	61	15.0000
!!ccc	chr13:113863071-113863331(+)$1	260	4	9	15.0000
ddmmm	chr6:32938751-32939002(+)$1	251	2	7	15.0000
"ccc[	chr7:116594345-116594614(+)$1	269	85	90	15.0000
fffff	chr17:46655730-46655996(-)$1	266	29	34	15.0000
==]bb	chr11:118965239-118965471(-)$1	232	131	136	15.0000
BB{DD	chr17:27717611-27717858(+)$1	247	30	35	15.0000
&&&ff	chr22:46508411-46508701(+)$1	290	161	166	15.0000
nnnnn	chrX:153686577-153686833(+)$1	256	181	186	15.0000
ggggg	chr17:8108202-8108422(-)$1	220	193	198	15.0000
=====	chr12:62997009-62997281(+)$1	272	154	159	15.0000
:::::	chr6:86352571-86352821(-)$1	250	20	25	15.0000
f:::d	chr17:30801680-30801883(+)$1	203	154	159	15.0000
DDDDB	chr3:49057855-49058094(-)$1	239	140	145	15.0000
BB{DD	chr19:2270187-2270442(+)$1	255	10	15	15.0000
bmmmm	chr22:46508745-46508979(+)$1	234	161	166	15.0000
EE:ff	chr22:46508558-46508792(+)$1	234	14	19	15.0000
GGG}C	chr17:27717512-27717774(+)$1	262	129	134	15.0000
DKKHH	chr19:46142162-46142429(-)$1	267	17	22	15.0000
bbeee	chr19:46142229-46142544(-)$1	315	132	137	15.0000
JJJJJ	chr17:27717311-27717662(+)$1	351	31	36	15.0000
:::::	chr13:113863745-113864018(+)$1	273	2	7	15.0000
:::::	chr8:102217336-102217599(-)$1	263	256	261	15.0000
ddd22	chr3:20081610-20081841(+)$1	231	56	61	15.0000
c!!dd	chr22:46505757-46506000(+)$1	243	115	120	15.0000
{CCCK	chr2:242707056-242707337(+)$1	281	6	11	15.0000
BB{CC	chr19:2429949-2430206(-)$1	257	59	64	15.0000
]ccc:	chr19:46142015-46142254(-)$1	239	51	56	15.0000
JJJJ{	chr2:97535541-97535806(-)$1	265	60	65	15.0000
ee22a	chr19:18111975-18112272(+)$1	297	34	39	15.0000
bb[dd	chr5:134363648-134363982(-)$1	334	241	246	15.0000
DD{FF	chr2:85772094-85772349(+)$1	255	96	101	15.0000
bb]cc	chr8:41513164-41513391(-)$1	227	172	177	15.0000
cssss	chr1:2121218-2121441(-)$1	223	147	152	15.0000
gggge	chr20:62572717-62572971(-)$1	254	123	128	15.0000
ff[cc	chr22:21983337-21983582(-)$1	245	10	15	15.0000
EEBBF	chr19:40741696-40741934(-)$1	238	200	205	15.0000
mmmbb	chr11:64073737-64073985(+)$1	248	55	60	15.0000
ooohh	chr9:131910360-131910617(+)$1	257	147	152	15.0000
:::JJ	chr6:32938575-32938814(+)$1	239	10	15	15.0000
bmmmm	chr1:2123469-2123748(-)$1	279	160	165	15.0000
rrrrr	chr3:49057804-49058052(-)$1	248	98	103	15.0000
fffff	chr10:70287015-70287285(-)$1	270	228	233	15.0000
bb[dd	chr3:48229392-48229658(-)$1	266	31	36	15.0000
DDEEE	chr17:72858658-72858970(-)$1	312	77	82	15.0000
ggggg	chr19:1878684-1878932(-)$1	248	54	59	15.0000

#DB
((..(	chr9:134269414-134269692(+)$1	1	0	5	15.0000
.))))	chr11:61583478-61583750(-)$1	1	56	61	15.0000
(((((	chr17:46656335-46656607(-)$1	1	96	101	15.0000
.....	chr22:19951923-19952171(+)$1	1	18	23	15.0000
)))).	chr3:49050518-49050775(+)$1	1	39	44	15.0000
(.(.(	chr3:20081761-20082033(+)$1	1	56	61	15.0000
..(((	chr13:113863071-113863331(+)$1	1	4	9	15.0000
((...	chr6:32938751-32939002(+)$1	1	2	7	15.0000
.(((.	chr7:116594345-116594614(+)$1	1	85	90	15.0000
)))))	chr17:46655730-46655996(-)$1	1	29	34	15.0000
)).))	chr11:118965239-118965471(-)$1	1	131	136	15.0000
((.((	chr17:27717611-27717858(+)$1	1	30	35	15.0000
...((	chr22:46508411-46508701(+)$1	1	161	166	15.0000
.....	chrX:153686577-153686833(+)$1	1	181	186	15.0000
(((((	chr17:8108202-8108422(-)$1	1	193	198	15.0000
(((((	chr12:62997009-62997281(+)$1	1	154	159	15.0000
.....	chr6:86352571-86352821(-)$1	1	20	25	15.0000
)...(	chr17:30801680-30801883(+)$1	1	154	159	15.0000
)))))	chr3:49057855-49058094(-)$1	1	140	145	15.0000
((.((	chr19:2270187-2270442(+)$1	1	10	15	15.0000
(....	chr22:46508745-46508979(+)$1	1	161	166	15.0000
((.((	chr22:46508558-46508792(+)$1	1	14	19	15.0000
))).)	chr17:27717512-27717774(+)$1	1	129	134	15.0000
(..((	chr19:46142162-46142429(-)$1	1	17	22	15.0000
(((((	chr19:46142229-46142544(-)$1	1	132	137	15.0000
(((((	chr17:27717311-27717662(+)$1	1	31	36	15.0000
.....	chr13:113863745-113864018(+)$1	1	2	7	15.0000
.....	chr8:102217336-102217599(-)$1	1	256	261	15.0000
)))..	chr3:20081610-20081841(+)$1	1	56	61	15.0000
(..((	chr22:46505757-46506000(+)$1	1	115	120	15.0000
.(((.	chr2:242707056-242707337(+)$1	1	6	11	15.0000
((.((	chr19:2429949-2430206(-)$1	1	59	64	15.0000
.))).	chr19:46142015-46142254(-)$1	1	51	56	15.0000
((((.	chr2:97535541-97535806(-)$1	1	60	65	15.0000
))..)	chr19:18111975-18112272(+)$1	1	34	39	15.0000
((.((	chr5:134363648-134363982(-)$1	1	241	246	15.0000
((.((	chr2:85772094-85772349(+)$1	1	96	101	15.0000
)).))	chr8:41513164-41513391(-)$1	1	172	177	15.0000
(....	chr1:2121218-2121441(-)$1	1	147	152	15.0000
)))))	chr20:62572717-62572971(-)$1	1	123	128	15.0000
((.((	chr22:21983337-21983582(-)$1	1	10	15	15.0000
)))))	chr19:40741696-40741934(-)$1	1	200	205	15.0000
...))	chr11:64073737-64073985(+)$1	1	55	60	15.0000
...))	chr9:131910360-131910617(+)$1	1	147	152	15.0000
...((	chr6:32938575-32938814(+)$1	1	10	15	15.0000
(....	chr1:2123469-2123748(-)$1	1	160	165	15.0000
.....	chr3:49057804-49058052(-)$1	1	98	103	15.0000
)))))	chr10:70287015-70287285(-)$1	1	228	233	15.0000
((.((	chr3:48229392-48229658(-)$1	1	31	36	15.0000
(((((	chr17:72858658-72858970(-)$1	1	77	82	15.0000
(((((	chr19:1878684-1878932(-)$1	1	54	59	15.0000

#PSSM
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	
A : 0.90	a : 0.09	
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	

#score	765.0000000000001
#seq	51
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_CDS_m1_run1.nuc.txt

#NT
UGUUUUCUGUUUU	chr2:111425285-111425533(-)$1	248	90	103	19.9322
UUUGUUUUGUUUU	chr15:73028020-73028266(+)$1	246	57	70	24.2542
UUUUUAUUGUUGU	chr21:40610341-40610636(-)$1	295	239	252	20.0169
UCUUGUUUCUUUU	chr16:31202173-31202405(+)$1	232	90	103	20.6949
UUUUUUUUGUGUU	chr2:20511285-20511536(-)$1	251	59	72	23.4915
UUUUUCCUCUUUU	chr5:150076316-150076565(-)$1	249	89	102	21.0338
UUUUUUUUCCUUU	chr6:138192233-138192508(+)$1	275	94	107	25.1864
UUUUUUUUGUUAA	chr17:34161458-34161672(+)$1	214	45	58	18.9999
UUAUUUUUCUUUU	chr15:79183215-79183468(+)$1	253	86	99	24.7627
UUUGUUUUAUUUU	chr12:96682923-96683179(-)$1	256	91	104	23.5762
UUUUUUUCAUUUU	chr1:160208404-160208659(-)$1	255	98	111	22.9830
CUUUUAUUCUUUU	chr14:97029021-97029280(+)$1	259	79	92	20.6949
UUUUUUCUCUUUU	chr17:49108916-49109202(-)$1	286	86	99	24.8474
UUGuuuuuaauuu	chr5:98229161-98229419(-)$1	258	2	15	19.2542
AUUUAUUUAUUUU	chr17:29552004-29552296(+)$1	292	88	101	19.2542
UUUUUUUCCUUUU	chr9:5933722-5933991(-)$1	269	94	107	24.2542
UUGUUCUUCUUUU	chr7:158557364-158557659(-)$1	295	99	112	20.6949
UUUUCUUUUUUUU	chr20:5584923-5585197(-)$1	274	93	106	23.9999
UUUUUUUUUUUUU	chr1:153617423-153617718(+)$1	295	87	100	27.7288
UUUUUUUUGCUCu	chr7:131122428-131122691(+)$1	263	63	76	20.3559
UUUCUUUUGUUAU	chr18:12971033-12971321(+)$1	288	77	90	20.1016
UUCUUUUUGCUUU	chr3:140692446-140692706(+)$1	260	94	107	20.3559
UUUCUUUUAUUGU	chr5:158621671-158621945(-)$1	274	47	60	19.5084
UUUUAUUUCCUUU	chr16:2809243-2809488(+)$1	245	55	68	21.2033
UUUUUUUUUUUUU	chr1:100542613-100542858(+)$1	245	89	102	27.7288
CUUUUUAUAUUUU	chr11:9304969-9305232(-)$1	263	72	85	19.2542
UUUUUUUUUUUCU	chr9:74859931-74860200(+)$1	269	21	34	23.4915
AUUUUUUUUUUUU	chr7:148516013-148516270(-)$1	257	6	19	23.5762
UUUGUUUUUUUUU	chr17:45015844-45016101(+)$1	257	88	101	23.9152
CAUUUUUUCUUUU	chr20:47587541-47587815(+)$1	274	69	82	20.3559
ACUUUUUUGUUUU	chr6:155126385-155126651(+)$1	266	30	43	19.8474
UUUUUUUUCCUUU	chr2:101885565-101885829(+)$1	264	94	107	25.1864
UUUCUUCUGUUUU	chr17:62481847-62482096(-)$1	249	89	102	20.5254
UCUUUUCUCUUUU	chr2:37111082-37111352(-)$1	270	88	101	20.7796
uuuguuuuguuuu	chr16:24741463-24741718(+)$1	255	75	88	24.2542
UUUUUCUUUUUUU	chr3:100025172-100025430(+)$1	258	79	92	23.9152
ucuuuuuuauUUU	chr1:150814786-150815059(-)$1	273	69	82	23.3220
UUUCUUUUCUCUU	chr6:16143811-16144078(+)$1	267	93	106	20.5254
UUUUUCUUUUUUU	chr8:30958255-30958571(+)$1	316	92	105	23.9152
UUUUUUUUUUUUU	chr3:160131155-160131412(+)$1	257	81	94	27.7288
UUUUUUUUCUUUU	chr3:197574164-197574419(+)$1	255	214	227	28.6610
UUUUCUUUCUUUU	chr1:246804939-246805188(+)$1	249	89	102	24.9322
UUUUUUUUCCUUU	chr13:27830478-27830710(+)$1	232	76	89	25.1864
UUUUUUGUCCUUU	chr11:45959701-45959993(-)$1	292	90	103	21.1186
UUUUUUUUGUUUU	chr5:148876246-148876533(-)$1	287	84	97	28.0677
UAAUUUUUUUUUU	chr15:76576026-76576276(-)$1	250	80	93	19.5932
UUUUGAUUUUUUU	chr6:168313983-168314238(+)$1	255	15	28	19.9322
UUUUUUGUGUCUU	chrX:151124175-151124446(-)$1	271	97	110	19.5932
UUAUUUUUGUUUU	chr9:134015827-134016099(+)$1	272	83	96	24.1694
UUUUCUUUAAUUU	chr2:32108375-32108654(-)$1	279	239	252	19.6779
UUUUCUUUCUUGU	chr7:100483382-100483630(+)$1	248	84	97	20.7796
UUUAUUUUGCUUU	chr11:76725942-76726201(+)$1	259	85	98	20.5254
UUACUUUUCUUUU	chr3:153998303-153998587(-)$1	284	90	103	21.0338
UUUUUCUACUUUU	chr3:196214297-196214557(-)$1	260	20	33	20.2711
UUUUUAAUCUUUU	chr22:32880935-32881208(+)$1	273	54	67	20.6949
UUUUGUUUCUCUU	chr15:93482701-93482957(+)$1	256	83	96	20.3559
CUAUUUUUGUUUU	chr12:121779725-121779981(-)$1	256	82	95	20.1016
uuuuuuuuuuuuu	chr1:207532781-207533059(+)$1	278	80	93	27.7288

#otherMatches

#Struct PSSM
ddd[ffffff!!c	chr10:93719619-93719873(+)$1	254	92	105	20.5254
%%%%eeeeennnn	chr2:111425285-111425533(-)$1	248	90	103	19.9322
333bb88888888	chr15:73028020-73028266(+)$1	246	57	70	24.2542
777777iiiiiii	chr21:40610341-40610636(-)$1	295	239	252	20.0169
dd!!=========	chr16:31202173-31202405(+)$1	232	90	103	20.6949
c:::::::eeeee	chr2:20511285-20511536(-)$1	251	59	72	23.4915
=============	chr5:150076316-150076565(-)$1	249	89	102	21.0338
666666ggggggg	chr6:138192233-138192508(+)$1	275	94	107	25.1864
88888888ggggg	chr17:34161458-34161672(+)$1	214	45	58	18.9999
==========hhh	chr15:79183215-79183468(+)$1	253	86	99	24.7627
e7777777fffff	chr12:96682923-96683179(-)$1	256	91	104	23.5762
:::::::::::::	chr1:160208404-160208659(-)$1	255	98	111	22.9830
:::::::::::::	chr14:97029021-97029280(+)$1	259	79	92	20.6949
:::::::::::::	chr17:49108916-49109202(-)$1	286	86	99	24.8474
eee!!ggggggg[	chr5:98229161-98229419(-)$1	258	2	15	19.2542
:::::::::::::	chr17:29552004-29552296(+)$1	292	88	101	19.2542
ddd88888888ii	chr9:5933722-5933991(-)$1	269	94	107	24.2542
::iiiiiiiii$$	chr7:158557364-158557659(-)$1	295	99	112	20.6949
>>>>>>>>dddd2	chr20:5584923-5585197(-)$1	274	93	106	23.9999
hh::::::::iii	chr1:153617423-153617718(+)$1	295	87	100	27.7288
ggggg]eeeee]f	chr7:131122428-131122691(+)$1	263	63	76	20.3559
:::bb[hhhhhhh	chr18:12971033-12971321(+)$1	288	77	90	20.1016
mdddd:iiiiiii	chr3:140692446-140692706(+)$1	260	94	107	20.3559
fffff::::::::	chr5:158621671-158621945(-)$1	274	47	60	19.5084
:::::::::dddd	chr16:2809243-2809488(+)$1	245	55	68	21.2033
uuuuuuuuuuccc	chr1:100542613-100542858(+)$1	245	89	102	27.7288
:::::::::::::	chr11:9304969-9305232(-)$1	263	72	85	19.2542
:::::::::::::	chr9:74859931-74860200(+)$1	269	21	34	23.4915
{DDDD:::::fff	chr7:148516013-148516270(-)$1	257	6	19	23.5762
ff[a!!=======	chr17:45015844-45016101(+)$1	257	88	101	23.9152
:::::::::::::	chr20:47587541-47587815(+)$1	274	69	82	20.3559
::::ggggggg[c	chr6:155126385-155126651(+)$1	266	30	43	19.8474
dddvvvvvvvvvv	chr2:101885565-101885829(+)$1	264	94	107	25.1864
IIIIIIBBPPPPP	chr17:62481847-62482096(-)$1	249	89	102	20.5254
BBLLLEEEEE:::	chr2:37111082-37111352(-)$1	270	88	101	20.7796
gggg####eeeee	chr16:24741463-24741718(+)$1	255	75	88	24.2542
vvvvvvvvvvvvv	chr3:100025172-100025430(+)$1	258	79	92	23.9152
:::::::::::::	chr1:150814786-150815059(-)$1	273	69	82	23.3220
hhhhhh:EEEEE:	chr6:16143811-16144078(+)$1	267	93	106	20.5254
cuuuuuuuuuuuu	chr8:30958255-30958571(+)$1	316	92	105	23.9152
==========eee	chr3:160131155-160131412(+)$1	257	81	94	27.7288
mmmmbb]dddd44	chr3:197574164-197574419(+)$1	255	214	227	28.6610
:::::::::::HH	chr1:246804939-246805188(+)$1	249	89	102	24.9322
::::::dddd$$$	chr13:27830478-27830710(+)$1	232	76	89	25.1864
::::::ffffff#	chr11:45959701-45959993(-)$1	292	90	103	21.1186
:::::iiiiiiii	chr5:148876246-148876533(-)$1	287	84	97	28.0677
:::::::iiiiii	chr15:76576026-76576276(-)$1	250	80	93	19.5932
yyyyyyyyyyyyy	chr6:168313983-168314238(+)$1	255	15	28	19.9322
::::::::cccqq	chrX:151124175-151124446(-)$1	271	97	110	19.5932
=====ffffffrr	chr9:134015827-134016099(+)$1	272	83	96	24.1694
D______IIIIII	chr2:32108375-32108654(-)$1	279	239	252	19.6779
yyyyyyyyyyyff	chr7:100483382-100483630(+)$1	248	84	97	20.7796
KKJJJJJJJJJJJ	chr11:76725942-76726201(+)$1	259	85	98	20.5254
ldddd:::::EEE	chr3:153998303-153998587(-)$1	284	90	103	21.0338
JJJJJJJ{GGGGG	chr3:196214297-196214557(-)$1	260	20	33	20.2711
=======]cccgg	chr22:32880935-32881208(+)$1	273	54	67	20.6949
5dddd4444ccc4	chr15:93482701-93482957(+)$1	256	83	96	20.3559
:::::::::::::	chr12:121779725-121779981(-)$1	256	82	95	20.1016
:::::::::::::	chr1:207532781-207533059(+)$1	278	80	93	27.7288

#DB
(((.((((((..(	chr10:93719619-93719873(+)$1	1	92	105	20.5254
....(((((....	chr2:111425285-111425533(-)$1	1	90	103	19.9322
...))........	chr15:73028020-73028266(+)$1	1	57	70	24.2542
......)))))))	chr21:40610341-40610636(-)$1	1	239	252	20.0169
((..(((((((((	chr16:31202173-31202405(+)$1	1	90	103	20.6949
).......(((((	chr2:20511285-20511536(-)$1	1	59	72	23.4915
)))))))))))))	chr5:150076316-150076565(-)$1	1	89	102	21.0338
......)))))))	chr6:138192233-138192508(+)$1	1	94	107	25.1864
........)))))	chr17:34161458-34161672(+)$1	1	45	58	18.9999
(((((((((((((	chr15:79183215-79183468(+)$1	1	86	99	24.7627
).......)))))	chr12:96682923-96683179(-)$1	1	91	104	23.5762
.............	chr1:160208404-160208659(-)$1	1	98	111	22.9830
.............	chr14:97029021-97029280(+)$1	1	79	92	20.6949
.............	chr17:49108916-49109202(-)$1	1	86	99	24.8474
(((..(((((((.	chr5:98229161-98229419(-)$1	1	2	15	19.2542
.............	chr17:29552004-29552296(+)$1	1	88	101	19.2542
)))........))	chr9:5933722-5933991(-)$1	1	94	107	24.2542
..(((((((((..	chr7:158557364-158557659(-)$1	1	99	112	20.6949
........)))).	chr20:5584923-5585197(-)$1	1	93	106	23.9999
))........(((	chr1:153617423-153617718(+)$1	1	87	100	27.7288
))))).))))).)	chr7:131122428-131122691(+)$1	1	63	76	20.3559
...((.(((((((	chr18:12971033-12971321(+)$1	1	77	90	20.1016
.)))).(((((((	chr3:140692446-140692706(+)$1	1	94	107	20.3559
)))))........	chr5:158621671-158621945(-)$1	1	47	60	19.5084
.........((((	chr16:2809243-2809488(+)$1	1	55	68	21.2033
..........)))	chr1:100542613-100542858(+)$1	1	89	102	27.7288
.............	chr11:9304969-9305232(-)$1	1	72	85	19.2542
.............	chr9:74859931-74860200(+)$1	1	21	34	23.4915
.((((.....(((	chr7:148516013-148516270(-)$1	1	6	19	23.5762
((.(..(((((((	chr17:45015844-45016101(+)$1	1	88	101	23.9152
.............	chr20:47587541-47587815(+)$1	1	69	82	20.3559
....(((((((.(	chr6:155126385-155126651(+)$1	1	30	43	19.8474
(((..........	chr2:101885565-101885829(+)$1	1	94	107	25.1864
((((((((.....	chr17:62481847-62482096(-)$1	1	89	102	20.5254
((...(((((...	chr2:37111082-37111352(-)$1	1	88	101	20.7796
((((....(((((	chr16:24741463-24741718(+)$1	1	75	88	24.2542
.............	chr3:100025172-100025430(+)$1	1	79	92	23.9152
.............	chr1:150814786-150815059(-)$1	1	69	82	23.3220
)))))).(((((.	chr6:16143811-16144078(+)$1	1	93	106	20.5254
(............	chr8:30958255-30958571(+)$1	1	92	105	23.9152
(((((((((((((	chr3:160131155-160131412(+)$1	1	81	94	27.7288
....)).))))..	chr3:197574164-197574419(+)$1	1	214	227	28.6610
...........((	chr1:246804939-246805188(+)$1	1	89	102	24.9322
......((((...	chr13:27830478-27830710(+)$1	1	76	89	25.1864
......((((((.	chr11:45959701-45959993(-)$1	1	90	103	21.1186
.....((((((((	chr5:148876246-148876533(-)$1	1	84	97	28.0677
.......((((((	chr15:76576026-76576276(-)$1	1	80	93	19.5932
.............	chr6:168313983-168314238(+)$1	1	15	28	19.9322
........(((..	chrX:151124175-151124446(-)$1	1	97	110	19.5932
(((((((((((..	chr9:134015827-134016099(+)$1	1	83	96	24.1694
)......))))))	chr2:32108375-32108654(-)$1	1	239	252	19.6779
...........))	chr7:100483382-100483630(+)$1	1	84	97	20.7796
..(((((((((((	chr11:76725942-76726201(+)$1	1	85	98	20.5254
.)))).....)))	chr3:153998303-153998587(-)$1	1	90	103	21.0338
(((((((.(((((	chr3:196214297-196214557(-)$1	1	20	33	20.2711
))))))).)))))	chr22:32880935-32881208(+)$1	1	54	67	20.6949
.))))....))).	chr15:93482701-93482957(+)$1	1	83	96	20.3559
.............	chr12:121779725-121779981(-)$1	1	82	95	20.1016
.............	chr1:207532781-207533059(+)$1	1	80	93	27.7288

#PSSM
U : 0.83	C : 0.06	A : 0.05	u : 0.05	
U : 0.84	C : 0.05	A : 0.03	u : 0.03	G : 0.01	c : 0.01	
U : 0.81	A : 0.08	u : 0.05	G : 0.03	C : 0.01	
U : 0.77	C : 0.08	G : 0.05	u : 0.05	g : 0.01	A : 0.01	
U : 0.76	C : 0.08	u : 0.06	G : 0.05	A : 0.03	
U : 0.77	C : 0.08	A : 0.06	u : 0.06	
U : 0.77	C : 0.08	u : 0.06	A : 0.03	G : 0.03	
U : 0.86	u : 0.06	C : 0.05	A : 0.01	
C : 0.38	G : 0.25	U : 0.18	A : 0.10	a : 0.03	g : 0.01	u : 0.01	
U : 0.77	C : 0.13	u : 0.05	a : 0.01	A : 0.01	
U : 0.88	u : 0.05	C : 0.05	G : 0.01	
U : 0.83	G : 0.05	u : 0.05	A : 0.03	C : 0.03	
U : 0.91	u : 0.06	A : 0.01	

#score	1318.457627118642
#seq	59
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_transcript_m3_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
ddmmmmdddd::::::::::::::::::::::::::::::::::::::A}HHHHHHHH}CCC:FFFFFF{GGGGGGGPPPPPPPDDDDKKA:EEEEE:::::bb[eeeee^^^^^^^^^^^^^^^^^^^^^^eeeeebb:bbffffff!!bb[a[dddd[a[a[ddddmmmmddddaa]dddd]a]bb22ffffff]bb:EEEEE::gggggggaddddllldddd666666a]gggggggAYYDDDD?????GGGGGGG}FFFFFF:	chr19:13054502-13054836(+)$1	334	62	330	804.0000

#DB
((....))))......................................).)))))))).))).((((((.(((((((.......((((..(.(((((.....((.(((((......................))))))).((((((((..((.(.((((.(.(.((((....)))))).)))).).))..)))))).)).)))))..((((((((((((...))))......).))))))))..)))).....))))))).)))))).	chr19:13054502-13054836(+)$1	1	62	330	804.0000

#PSSM
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	

#score	804.0
#seq	1
#width	268
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_CDS_m2_run1.nuc.txt

#NT
CUACCUCUUUUUC	chr12:57113947-57114188(-)$1	241	79	92	15.1607
UUUGCUCUUCCUU	chr6:131193568-131193806(-)$1	238	100	113	17.8392
UUUCCUCUUCUUC	chr19:45912070-45912316(-)$1	246	97	110	26.1428
UUUUCUCUUUUUA	chr9:115092622-115092948(-)$1	326	167	180	16.7678
uuuccucugcugc	chr2:70129596-70129938(+)$1	342	21	34	18.1964
UGUCCUCUUCCUC	chr5:112227418-112227712(-)$1	294	210	223	19.3571
UUUUCUUUUCUUU	chr6:168355016-168355260(+)$1	244	202	215	19.1785
Uuucuucuucucc	chr22:40749181-40749471(+)$1	290	95	108	20.5178
CUUCCGUUUCUUC	chr12:57918220-57918525(+)$1	305	35	48	15.3392
UUUCCUUUUCUUU	chr9:111848182-111848491(-)$1	309	101	114	21.2321
uuucuucuccuuc	chr2:70129274-70129609(+)$1	335	93	106	21.4107
UUACAUCUCCUUC	chr4:1215494-1215783(-)$1	289	80	93	16.5892
uuuuuucuuuuuc	chr14:53348416-53348713(-)$1	297	70	83	18.7321
CUUCCUCUUCUUC	chr2:242755983-242756228(+)$1	245	197	210	22.6607
UUUUCUCCUCUUC	chr14:63861893-63862195(-)$1	302	173	186	19.4464
guuucucuucguc	chr19:42401902-42402248(+)$1	346	104	117	16.3214
UUUUCUCUCAUUC	chr1:176137759-176138057(-)$1	298	131	144	16.5892
UCUCUUGUUCUUU	chr9:114128801-114129054(-)$1	253	91	104	15.4285
uuuacucuucuuu	chr9:13186284-13186541(-)$1	257	81	94	20.6964
uaucuucuucucc	chr14:76644089-76644354(+)$1	265	67	80	16.6785
UUUUCUCUUCUGU	chr4:74269944-74270159(+)$1	215	64	77	17.4821
UUUCAUUUUCUUU	chr15:42523974-42524283(-)$1	309	139	152	18.5535
CUUCAUCUUCCUC	chr14:24658521-24658824(-)$1	303	14	27	17.0357
cuucuucuucuuc	chr14:23993907-23994185(+)$1	278	88	101	21.1428
UUUUCUGUUCGUC	chrX:70468538-70468828(-)$1	290	79	92	16.9464
UUUUUUCUCCUUG	chrX:21863303-21863595(+)$1	292	31	44	15.8749
UCUGCUUUUCUUC	chrX:151129623-151129885(-)$1	262	216	229	17.1249
UUUCCUCUGCCCC	chr8:134296919-134297180(-)$1	261	15	28	15.4285
uuuguuuuucuuu	chr12:120150389-120150672(-)$1	283	136	149	16.6785
uuccuucuucuuc	chr7:116608283-116608561(+)$1	278	130	143	20.7857
UCUCCUCUGUUUC	chr1:109816461-109816799(+)$1	338	118	131	15.2499
uUUUCUCUUCCUC	chr19:42839801-42840202(+)$1	401	264	277	21.1428
uugcuucuucuuc	chr2:70129459-70129788(+)$1	329	122	135	20.6964
ucuucucuucauc	chr2:187511227-187511525(+)$1	298	67	80	16.9464
UGUUCUUUUCUUC	chr16:30733712-30734019(+)$1	307	84	97	17.6607
ucuccccuucuuu	chr9:98236313-98236621(-)$1	308	92	105	15.6964
CUACUUCUUCUUC	chrX:76849214-76849509(-)$1	295	196	209	17.4821
uuuccucuccuuu	chr11:101827393-101827693(+)$1	300	4	17	20.6071
UUUUGUCUCCUUC	chr1:17939366-17939661(+)$1	295	116	129	17.9285
uuuuuucuuuuuc	chr9:71849237-71849519(+)$1	282	85	98	18.7321
ucuccucuuccuu	chr6:32083629-32083902(-)$1	273	125	138	17.4821
uuuccucuucuuc	chr11:101827160-101827546(+)$1	386	174	187	26.1428
uccccuuuucuuc	chr11:9853832-9854151(-)$1	319	120	133	16.3214
cuuccucuucuuc	chr17:7369626-7369951(-)$1	325	111	124	22.6607
UUCCAUCUACUUC	chr17:7813566-7813859(+)$1	293	8	21	15.7857
cuucuucuucuuc	chr15:96880453-96880701(+)$1	248	59	72	21.1428
UUUCUUCCCCUUC	chr3:48016819-48017116(-)$1	297	112	125	16.7678
uuuccuauucucc	chr16:68324133-68324401(+)$1	268	57	70	18.4642
Uuucuucuuccuc	chr1:14107346-14107648(+)$1	302	95	108	21.6785
uuuccuuuucuuu	chr19:13002965-13003253(+)$1	288	129	142	21.2321
UUUAUUCUUUUUC	chr3:133347461-133347770(-)$1	309	1	14	17.6607
UAUCCUUUUCUUU	chr15:59191623-59191911(+)$1	288	93	106	17.3928
UUACCUUUUCCUC	chr8:30406948-30407192(+)$1	244	44	57	16.9464
uuucuucuucuuu	chr16:15696298-15696592(-)$1	294	124	137	22.3035
UUGCCUCUCCCUC	chr12:57920418-57920679(+)$1	261	130	143	16.0535

#otherMatches

#Struct PSSM
::::iiiiiiiii	chr8:30406992-30407253(+)$1	261	0	13	16.9464
eee::::::::::	chr12:57113947-57114188(-)$1	241	79	92	15.1607
:::::::======	chr6:131193568-131193806(-)$1	238	100	113	17.8392
^^^^^^^^^^^^^	chr19:45912070-45912316(-)$1	246	97	110	26.1428
:::::::::::::	chr9:115092622-115092948(-)$1	326	167	180	16.7678
yyyyyyyybb]bb	chr2:70129596-70129938(+)$1	342	21	34	18.1964
GG::eeeee[app	chr5:112227418-112227712(-)$1	294	210	223	19.3571
uuuuuuuuuuuud	chr6:168355016-168355260(+)$1	244	202	215	19.1785
d22bb::::::::	chr22:40749181-40749471(+)$1	290	95	108	20.5178
:::::::::::::	chr12:57918220-57918525(+)$1	305	35	48	15.3392
"""bbzzzzzzzz	chr9:111848182-111848491(-)$1	309	101	114	21.2321
:::::::::::::	chr2:70129274-70129609(+)$1	335	93	106	21.4107
LDDDDNNNNNGGG	chr4:1215494-1215783(-)$1	289	80	93	16.5892
CCKKCCC::::::	chr14:53348416-53348713(-)$1	297	70	83	18.7321
yyyyyyyyyyyyy	chr2:242755983-242756228(+)$1	245	197	210	22.6607
::::::cccqqqq	chr14:63861893-63862195(-)$1	302	173	186	19.4464
II:::::::::::	chr19:42401902-42402248(+)$1	346	104	117	16.3214
:::::::::::::	chr1:176137759-176138057(-)$1	298	131	144	16.5892
dd!!dddd'''''	chr9:114128801-114129054(-)$1	253	91	104	15.4285
:::::::::::::	chr9:13186284-13186541(-)$1	257	81	94	20.6964
DDDCCCBB::ddd	chr14:76644089-76644354(+)$1	265	67	80	16.6785
666666eeeee33	chr4:74269944-74270159(+)$1	215	64	77	17.4821
""ccc++++++++	chr15:42523974-42524283(-)$1	309	139	152	18.5535
::EEEEELLLA{A	chr14:24658521-24658824(-)$1	303	14	27	17.0357
:::::::::::::	chr14:23993907-23994185(+)$1	278	88	101	21.1428
eeeeeee::::::	chrX:70468538-70468828(-)$1	290	79	92	16.9464
[gggggggmmmmg	chrX:21863303-21863595(+)$1	292	31	44	15.8749
EE:bb[cccoooo	chrX:151129623-151129885(-)$1	262	216	229	17.1249
:::::EEEEEKKB	chr8:134296919-134297180(-)$1	261	15	28	15.4285
:::::::::::::	chr12:120150389-120150672(-)$1	283	136	149	16.6785
:::::::::::::	chr7:116608283-116608561(+)$1	278	130	143	20.7857
>>>>>>>>>>>>>	chr1:109816461-109816799(+)$1	338	118	131	15.2499
:::::::::::::	chr19:42839801-42840202(+)$1	401	264	277	21.1428
mmbb:::::::::	chr2:70129459-70129788(+)$1	329	122	135	20.6964
ddddcccffffff	chr2:187511227-187511525(+)$1	298	67	80	16.9464
ff4444=======	chr16:30733712-30734019(+)$1	307	84	97	17.6607
ddd88888888ee	chr9:98236313-98236621(-)$1	308	92	105	15.6964
cc^^^^^^^^^^^	chrX:76849214-76849509(-)$1	295	196	209	17.4821
:::::::::::::	chr11:101827393-101827693(+)$1	300	4	17	20.6071
HHHHH{EEEEE{A	chr1:17939366-17939661(+)$1	295	116	129	17.9285
!!ffffff!!fff	chr9:71849237-71849519(+)$1	282	85	98	18.7321
IIIIIII::::::	chr6:32083629-32083902(-)$1	273	125	138	17.4821
:::::::::::::	chr11:101827160-101827546(+)$1	386	174	187	26.1428
:::::::GGGGGG	chr11:9853832-9854151(-)$1	319	120	133	16.3214
:::::::::::::	chr17:7369626-7369951(-)$1	325	111	124	22.6607
:::::::::::::	chr17:7813566-7813859(+)$1	293	8	21	15.7857
:::::::::::::	chr15:96880453-96880701(+)$1	248	59	72	21.1428
:::::::::::::	chr3:48016819-48017116(-)$1	297	112	125	16.7678
:::::::::::::	chr16:68324133-68324401(+)$1	268	57	70	18.4642
:::::::::::::	chr1:14107346-14107648(+)$1	302	95	108	21.6785
:::::::::::::	chr19:13002965-13003253(+)$1	288	129	142	21.2321
::::JJJJJJJJJ	chr3:133347461-133347770(-)$1	309	1	14	17.6607
55555ffffff]d	chr15:59191623-59191911(+)$1	288	93	106	17.3928
eeee^^^^^^^^^	chr8:30406948-30407192(+)$1	244	44	57	16.9464
::::::::::::b	chr16:15696298-15696592(-)$1	294	124	137	22.3035
44ccc]dddd22b	chr12:57920418-57920679(+)$1	261	130	143	16.0535

#DB
....(((((((((	chr8:30406992-30407253(+)$1	1	0	13	16.9464
)))..........	chr12:57113947-57114188(-)$1	1	79	92	15.1607
.......((((((	chr6:131193568-131193806(-)$1	1	100	113	17.8392
.............	chr19:45912070-45912316(-)$1	1	97	110	26.1428
.............	chr9:115092622-115092948(-)$1	1	167	180	16.7678
........)).))	chr2:70129596-70129938(+)$1	1	21	34	18.1964
))..(((((.(..	chr5:112227418-112227712(-)$1	1	210	223	19.3571
............)	chr6:168355016-168355260(+)$1	1	202	215	19.1785
)..))........	chr22:40749181-40749471(+)$1	1	95	108	20.5178
.............	chr12:57918220-57918525(+)$1	1	35	48	15.3392
...((........	chr9:111848182-111848491(-)$1	1	101	114	21.2321
.............	chr2:70129274-70129609(+)$1	1	93	106	21.4107
.((((.....(((	chr4:1215494-1215783(-)$1	1	80	93	16.5892
((..(((......	chr14:53348416-53348713(-)$1	1	70	83	18.7321
.............	chr2:242755983-242756228(+)$1	1	197	210	22.6607
......(((....	chr14:63861893-63862195(-)$1	1	173	186	19.4464
((...........	chr19:42401902-42402248(+)$1	1	104	117	16.3214
.............	chr1:176137759-176138057(-)$1	1	131	144	16.5892
((..((((.....	chr9:114128801-114129054(-)$1	1	91	104	15.4285
.............	chr9:13186284-13186541(-)$1	1	81	94	20.6964
((((((((..(((	chr14:76644089-76644354(+)$1	1	67	80	16.6785
......)))))..	chr4:74269944-74270159(+)$1	1	64	77	17.4821
..(((........	chr15:42523974-42524283(-)$1	1	139	152	18.5535
..(((((...(.(	chr14:24658521-24658824(-)$1	1	14	27	17.0357
.............	chr14:23993907-23994185(+)$1	1	88	101	21.1428
)))))))......	chrX:70468538-70468828(-)$1	1	79	92	16.9464
.(((((((....)	chrX:21863303-21863595(+)$1	1	31	44	15.8749
)).((.(((....	chrX:151129623-151129885(-)$1	1	216	229	17.1249
.....(((((..(	chr8:134296919-134297180(-)$1	1	15	28	15.4285
.............	chr12:120150389-120150672(-)$1	1	136	149	16.6785
.............	chr7:116608283-116608561(+)$1	1	130	143	20.7857
.............	chr1:109816461-109816799(+)$1	1	118	131	15.2499
.............	chr19:42839801-42840202(+)$1	1	264	277	21.1428
..)).........	chr2:70129459-70129788(+)$1	1	122	135	20.6964
)))))))))))))	chr2:187511227-187511525(+)$1	1	67	80	16.9464
))....)))))))	chr16:30733712-30734019(+)$1	1	84	97	17.6607
)))........))	chr9:98236313-98236621(-)$1	1	92	105	15.6964
((...........	chrX:76849214-76849509(-)$1	1	196	209	17.4821
.............	chr11:101827393-101827693(+)$1	1	4	17	20.6071
(((((.(((((.(	chr1:17939366-17939661(+)$1	1	116	129	17.9285
..((((((..(((	chr9:71849237-71849519(+)$1	1	85	98	18.7321
(((((((......	chr6:32083629-32083902(-)$1	1	125	138	17.4821
.............	chr11:101827160-101827546(+)$1	1	174	187	26.1428
.......((((((	chr11:9853832-9854151(-)$1	1	120	133	16.3214
.............	chr17:7369626-7369951(-)$1	1	111	124	22.6607
.............	chr17:7813566-7813859(+)$1	1	8	21	15.7857
.............	chr15:96880453-96880701(+)$1	1	59	72	21.1428
.............	chr3:48016819-48017116(-)$1	1	112	125	16.7678
.............	chr16:68324133-68324401(+)$1	1	57	70	18.4642
.............	chr1:14107346-14107648(+)$1	1	95	108	21.6785
.............	chr19:13002965-13003253(+)$1	1	129	142	21.2321
....(((((((((	chr3:133347461-133347770(-)$1	1	1	14	17.6607
.....)))))).)	chr15:59191623-59191911(+)$1	1	93	106	17.3928
((((.........	chr8:30406948-30407192(+)$1	1	44	57	16.9464
............(	chr16:15696298-15696592(-)$1	1	124	137	22.3035
..))).))))..)	chr12:57920418-57920679(+)$1	1	130	143	16.0535

#PSSM
U : 0.49	u : 0.33	C : 0.08	c : 0.05	g : 0.01	
U : 0.46	u : 0.33	c : 0.07	C : 0.05	G : 0.03	a : 0.01	A : 0.01	
U : 0.44	u : 0.37	A : 0.08	c : 0.03	g : 0.01	C : 0.01	G : 0.01	
C : 0.33	c : 0.32	U : 0.17	u : 0.07	G : 0.03	a : 0.01	g : 0.01	A : 0.01	
C : 0.39	c : 0.21	u : 0.21	U : 0.08	A : 0.07	G : 0.01	
U : 0.55	u : 0.41	G : 0.01	c : 0.01	
C : 0.37	c : 0.35	U : 0.16	u : 0.05	G : 0.03	a : 0.01	
U : 0.53	u : 0.42	C : 0.03	
U : 0.41	u : 0.37	C : 0.10	c : 0.03	G : 0.03	g : 0.01	A : 0.01	
C : 0.48	c : 0.39	U : 0.07	u : 0.03	A : 0.01	
U : 0.41	u : 0.35	C : 0.14	c : 0.03	g : 0.01	G : 0.01	a : 0.01	
U : 0.53	u : 0.35	c : 0.05	g : 0.01	G : 0.01	C : 0.01	
C : 0.41	c : 0.30	U : 0.12	u : 0.12	A : 0.01	G : 0.01	

#score	1038.4642857142856
#seq	56
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_CDS_m3_run2.nuc.txt

#NT
ccccagccccagcccaagccucaggucc	chr7:143079958-143080228(+)$1	270	109	137	24.9574
CGGCCUUCCCACCCCCAGGCUCAUCCCC	chr1:886446-886716(-)$1	270	80	108	24.3191
UCCCCAGCCCAGCCCCCACCCCCUUCCC	chr7:73011592-73011933(-)$1	341	203	231	23.5744
CCCCCUCAGCUCUCCCCGGCUCUGCCCA	chr19:42753409-42753672(-)$1	263	189	217	18.5744
cuucagccccagccccagccccuacccc	chr1:171526817-171527106(+)$1	289	165	193	31.2340
UGcgcccccggccccccgccgcagcccc	chr19:56125134-56125518(+)$1	384	27	55	16.0212
CCGCCAGUGCCCCCCCAGCCACAACCCC	chr19:15376147-15376493(-)$1	346	230	258	24.7446
CCCCGACACCAGGCACCCCAGCCACCGC	chr12:124825047-124825320(-)$1	273	68	96	15.3829
cuucagccccagccccagccccuacccc	chr1:171526906-171527171(+)$1	265	76	104	31.2340
GUCCUUCCCCGGGCCCUGGCCCUUCCCC	chr19:11094722-11095044(+)$1	322	148	176	16.6595
CACCUGUCCCAGCUCCAGCCCCAAUGCC	chr22:30732987-30733271(-)$1	284	126	154	18.3617
ccucuucccucaccucagccuccgcucc	chr17:29422092-29422390(+)$1	298	139	167	22.5106
CCUGUGCCCCCACCGCAGCCACUGCCCA	chr3:47451923-47452157(+)$1	234	95	123	18.6808
ccaccaccuccaccuccgccaccucccc	chr7:29923560-29923921(+)$1	361	216	244	26.2340
CCACACUUCCUGCCCCAGCCUCGGCUCC	chr16:30734841-30735153(+)$1	312	237	265	24.9574
CCCGCUUUCCUCUCCCAUCCUCAUCCCC	chr19:9940572-9940849(+)$1	277	134	162	19.5319
cuccucaggcccccuccgccuccacccc	chr16:188165-188445(-)$1	280	9	37	19.8510
CCUCUUUCCCUGCCCCAGCCCAGCAUCC	chr12:862897-863178(+)$1	281	128	156	16.9787
ccgccgccccggcugccgccUCUGGCCC	chr19:1241862-1242089(+)$1	227	63	91	23.5744
ccaccacccuccccgccgccacuaccac	chr19:50435823-50436085(+)$1	262	43	71	21.3404
CCAUCACCACAGCACCCGCUGCCACCAC	chr1:28793024-28793281(+)$1	257	39	67	17.5106
ccccagccccagccccauccucagcccc	chr3:47452004-47452251(+)$1	247	140	168	32.7234
CAGCAGCCGCCGUCCCGACCUCCACACC	chr5:175958965-175959225(-)$1	260	89	117	18.4680
CCCCCUGGCCCACCCCACCAGCCACUAC	chr17:8046782-8047142(-)$1	360	83	111	15.9148
CCUCCGGUCCCUCCACUUCCUCCACUUC	chr18:34376606-34376991(-)$1	385	156	184	16.1276
GCUCCAAAGCAGCCCCAGGCCCUGGCCC	chr9:134019835-134020119(+)$1	284	59	87	16.1276
CCCGCGGCCCCACACCCGCCUCCACCGC	chr8:124219477-124219768(+)$1	291	217	245	22.4042
CCACCACCAAUUCCACCCCCACCACCUC	chr11:61183542-61183832(-)$1	290	5	33	16.3404
UCCCCACGGCUGCCCCCACCUCGGACCC	chr19:56203159-56203413(+)$1	254	54	82	19.5319
caucaccaccgccucuggccgccacccc	chr6:34212722-34212960(+)$1	238	39	67	15.3829
CUCCCAGCCCCGCCCCACCGCCCAUCUC	chr12:122617975-122618249(+)$1	274	139	167	19.2127
ccucugucccugcccuggucucuccccg	chr19:42401762-42402096(+)$1	334	199	227	15.9148
CCCCCAAUCCCAUCCCGGCCUGGACCCC	chr19:10940887-10941157(+)$1	270	42	70	20.5957
CCGCCCCCGCAGCCGCCGCCUCCUGCUC	chr15:65425855-65426157(-)$1	302	80	108	24.6382
GCAccuccuccucccccuccuccuccuc	chr1:27736215-27736492(-)$1	277	135	163	21.0212
ccucuucuucagcuccagccucagcccc	chr1:171526658-171526928(+)$1	270	84	112	25.5957
CCCCACCCACAGGCCCAGCCUCCUCGGU	chr17:79826377-79826624(-)$1	247	52	80	20.3829
CGCCCCCCACUGCCAAGGCCCCCACCAC	chr2:171822216-171822560(+)$1	344	308	336	19.5319
CCCCGCCCGCGGCCACAGCGUCUGCUCC	chr8:128750982-128751233(+)$1	251	14	42	21.1276
CCUCCUCCUCUGACCCAGCCCCCUCAGA	chr1:33236450-33236737(+)$1	287	233	261	19.2127
CCCCCAUCCCAGUCCCAGCCUACUUCCG	chr16:3026860-3027143(-)$1	283	171	199	22.1914
ccaccaccccagccccagccuccacccc	chr19:15353693-15354044(-)$1	351	96	124	38.4680
CCACCCCUUCUUACUCAUCCUCCUCCUC	chr14:75230609-75230917(+)$1	308	190	218	16.4468
CCGCCCCCCAAGGCCCCGGCCCCUCCCG	chr16:30675435-30675690(+)$1	255	110	138	20.0638
CGccaaccccagucccggcggcggcccc	chr11:8008807-8009085(+)$1	278	132	160	22.1914
CUCCAGCUCCACCUCCAGCAUCAGCCCC	chr6:31595816-31596066(+)$1	250	26	54	20.9148

#otherMatches

#Struct PSSM
:::::::::BBKKEEEEELLLDDDDPPP	chr11:763282-763549(+)$1	267	4	32	17.4042
ba22dddd22dddd:EEEEE{DDDDLLL	chr7:143079958-143080228(+)$1	270	109	137	24.9574
ffffbb333bb]dddd22dddd]eeeee	chr1:886446-886716(-)$1	270	80	108	24.3191
IIIII:::::::::::::::::::::::	chr7:73011592-73011933(-)$1	341	203	231	23.5744
oooooodddd:::::::EEEEE}A????	chr19:42753409-42753672(-)$1	263	189	217	18.5744
cc"""bbmmmmbb333ccc:::::::::	chr1:171526817-171527106(+)$1	289	165	193	31.2340
BBJJJJJJJJJJJJKKCCC:bb[bbmmm	chr19:56125134-56125518(+)$1	384	27	55	16.0212
mmbb::ccc[aooooooa]ccc::::::	chr19:15376147-15376493(-)$1	346	230	258	24.7446
ooocccbb]ffffffHHHHHHHH{BB{G	chr12:124825047-124825320(-)$1	273	68	96	15.3829
cc"""bbmmmmbb333ccc:::::::::	chr1:171526906-171527171(+)$1	265	76	104	31.2340
gcccooooooccc]ggggggg8888888	chr19:11094722-11095044(+)$1	322	148	176	16.6595
ee[ffffffa[abb[ccc++++++++++	chr22:30732987-30733271(-)$1	284	126	154	18.3617
DDD:::::::::::::cccmmmmccc::	chr17:29422092-29422390(+)$1	298	139	167	22.5106
]eeeee88888888bb:bb####eeeee	chr3:47451923-47452157(+)$1	234	95	123	18.6808
fffff:::::::::::::::::::::::	chr7:29923560-29923921(+)$1	361	216	244	26.2340
:::::::::::cccqqqqqqqqccc:::	chr16:30734841-30735153(+)$1	312	237	265	24.9574
GGGGGGYYFFFFFFYYDDDD::DDDDDD	chr19:9940572-9940849(+)$1	277	134	162	19.5319
DDDD::ddddpppppppdddd:::::dd	chr16:188165-188445(-)$1	280	9	37	19.8510
:::::::::dddd!!eeeee!!bboooo	chr12:862897-863178(+)$1	281	128	156	16.9787
b[ddddllldddd]bb]eeeee]ccc::	chr19:1241862-1242089(+)$1	227	63	91	23.5744
^^^^^^^^^^^^^^bb]bb22ccc::::	chr19:50435823-50436085(+)$1	262	43	71	21.3404
:::::::::ddddmmmmdddd:::::::	chr1:28793024-28793281(+)$1	257	39	67	17.5106
dssssssssssdddd]eeeee22bb:::	chr3:47452004-47452251(+)$1	247	140	168	32.7234
uuuubb]cccggggggg:dddd[bbqqq	chr5:175958965-175959225(-)$1	260	89	117	18.4680
WWWWWWEEEEE:::::::eeeee[bbtt	chr17:8046782-8047142(-)$1	360	83	111	15.9148
emmmmeeeee::::::::::::::::::	chr18:34376606-34376991(-)$1	385	156	184	16.1276
ccc$$$$$dddd$$$$$ccc"""ccc^^	chr9:134019835-134020119(+)$1	284	59	87	16.1276
ddeeeee333eeeee::::::::ddddl	chr8:124219477-124219768(+)$1	291	217	245	22.4042
::::::::::::::::::::::::::::	chr11:61183542-61183832(-)$1	290	5	33	16.3404
emmmmeeeee]bbeeeee!!dddd[a!!	chr19:56203159-56203413(+)$1	254	54	82	19.5319
::::::::::ccclllccc:::::::::	chr6:34212722-34212960(+)$1	238	39	67	15.3829
nnnndddd:::bboooooobb::::CCC	chr12:122617975-122618249(+)$1	274	139	167	19.2127
^^^^^^^^^^^ccc22ccc:::::::::	chr19:42401762-42402096(+)$1	334	199	227	15.9148
fffff:::::::::::ccc!!ccc####	chr19:10940887-10941157(+)$1	270	42	70	20.5957
nnccc:::ggggggg!!bbnnnnnbb66	chr15:65425855-65426157(-)$1	302	80	108	24.6382
hlllhhhhhhhh::::::::::::::::	chr1:27736215-27736492(-)$1	277	135	163	21.0212
c:::::::::dddd"""bbmmmmbb333	chr1:171526658-171526928(+)$1	270	84	112	25.5957
iiiiii[ggggggg!!ccc!!a!!bba[	chr17:79826377-79826624(-)$1	247	52	80	20.3829
!cccuuuuuuuuuuuuccc22abbdddd	chr2:171822216-171822560(+)$1	344	308	336	19.5319
::::ccclllccc::::CCC{EEEEE::	chr8:128750982-128751233(+)$1	251	14	42	21.1276
>>>>>>>>>>>ccc333eeeee::::CC	chr1:33236450-33236737(+)$1	287	233	261	19.2127
^^^^^^^^^^^^^^^^^^^^^^^^^^^e	chr16:3026860-3027143(-)$1	283	171	199	22.1914
:::::::::::bbmmmmbb:::::::::	chr19:15353693-15354044(-)$1	351	96	124	38.4680
:::::::::::::dddd^^^^^^^^^^^	chr14:75230609-75230917(+)$1	308	190	218	16.4468
ddcccooooooccc333dddd:::::::	chr16:30675435-30675690(+)$1	255	110	138	20.0638
4dddd:::::::::::EEEEE:DDDDKK	chr11:8008807-8009085(+)$1	278	132	160	22.1914
CCKKCCCOOOOOOBBKKEEEEE::EEEE	chr6:31595816-31596066(+)$1	250	26	54	20.9148

#DB
.........((..(((((...((((...	chr11:763282-763549(+)$1	1	4	32	17.4042
))..))))..)))).(((((.((((...	chr7:143079958-143080228(+)$1	1	109	137	24.9574
))))))...)).))))..)))).)))))	chr1:886446-886716(-)$1	1	80	108	24.3191
(((((.......................	chr7:73011592-73011933(-)$1	1	203	231	23.5744
......)))).......))))).)....	chr19:42753409-42753672(-)$1	1	189	217	18.5744
((...((....))...))).........	chr1:171526817-171527106(+)$1	1	165	193	31.2340
((((((((((((((..(((.((.((...	chr19:56125134-56125518(+)$1	1	27	55	16.0212
..))..(((.(......).)))......	chr19:15376147-15376493(-)$1	1	230	258	24.7446
...))))).))))))((((((((.((.(	chr12:124825047-124825320(-)$1	1	68	96	15.3829
((...((....))...))).........	chr1:171526906-171527171(+)$1	1	76	104	31.2340
((((......))).))))))).......	chr19:11094722-11095044(+)$1	1	148	176	16.6595
((.(((((((.(((.(((..........	chr22:30732987-30733271(-)$1	1	126	154	18.3617
(((.............(((....)))..	chr17:29422092-29422390(+)$1	1	139	167	22.5106
.)))))........)).((....(((((	chr3:47451923-47452157(+)$1	1	95	123	18.6808
))))).......................	chr7:29923560-29923921(+)$1	1	216	244	26.2340
...........(((........)))...	chr16:30734841-30735153(+)$1	1	237	265	24.9574
))))))..))))))..))))..((((((	chr19:9940572-9940849(+)$1	1	134	162	19.5319
((((..((((.......)))).....((	chr16:188165-188445(-)$1	1	9	37	19.8510
.........((((..(((((..((....	chr12:862897-863178(+)$1	1	128	156	16.9787
(.((((...)))).)).))))).)))..	chr19:1241862-1242089(+)$1	1	63	91	23.5744
..............)).))..)))....	chr19:50435823-50436085(+)$1	1	43	71	21.3404
.........((((....)))).......	chr1:28793024-28793281(+)$1	1	39	67	17.5106
(..........)))).)))))..))...	chr3:47452004-47452251(+)$1	1	140	168	32.7234
....)).)))))))))).((((.((...	chr5:175958965-175959225(-)$1	1	89	117	18.4680
......(((((.......(((((.((..	chr17:8046782-8047142(-)$1	1	83	111	15.9148
(....)))))..................	chr18:34376606-34376991(-)$1	1	156	184	16.1276
(((.....((((.....(((...(((..	chr9:134019835-134020119(+)$1	1	59	87	16.1276
)))))))...)))))........((((.	chr8:124219477-124219768(+)$1	1	217	245	22.4042
............................	chr11:61183542-61183832(-)$1	1	5	33	16.3404
(....))))).))(((((..((((.(..	chr19:56203159-56203413(+)$1	1	54	82	19.5319
..........(((...))).........	chr6:34212722-34212960(+)$1	1	39	67	15.3829
....))))...((......))....)))	chr12:122617975-122618249(+)$1	1	139	167	19.2127
...........)))..))).........	chr19:42401762-42402096(+)$1	1	199	227	15.9148
)))))...........(((..(((....	chr19:10940887-10941157(+)$1	1	42	70	20.5957
..)))...(((((((..((.....))..	chr15:65425855-65426157(-)$1	1	80	108	24.6382
(...))))))))................	chr1:27736215-27736492(-)$1	1	135	163	21.0212
).........((((...((....))...	chr1:171526658-171526928(+)$1	1	84	112	25.5957
((((((.(((((((..(((..(..(((.	chr17:79826377-79826624(-)$1	1	52	80	20.3829
.(((............)))..)))))))	chr2:171822216-171822560(+)$1	1	308	336	19.5319
....(((...)))....(((.(((((..	chr8:128750982-128751233(+)$1	1	14	42	21.1276
...........)))...)))))....))	chr1:33236450-33236737(+)$1	1	233	261	19.2127
...........................)	chr16:3026860-3027143(-)$1	1	171	199	22.1914
...........((....)).........	chr19:15353693-15354044(-)$1	1	96	124	38.4680
.............((((...........	chr14:75230609-75230917(+)$1	1	190	218	16.4468
(((((......)))...)))).......	chr16:30675435-30675690(+)$1	1	110	138	20.0638
.))))...........))))).((((..	chr11:8008807-8009085(+)$1	1	132	160	22.1914
((..(((......((..(((((..((((	chr6:31595816-31596066(+)$1	1	26	54	20.9148

#PSSM
C : 0.57	c : 0.29	U : 0.06	G : 0.06	
C : 0.51	c : 0.19	G : 0.08	u : 0.06	U : 0.06	A : 0.04	g : 0.02	a : 0.02	
C : 0.34	c : 0.12	u : 0.12	G : 0.10	U : 0.10	A : 0.10	a : 0.06	g : 0.02	
C : 0.55	c : 0.34	G : 0.06	g : 0.02	U : 0.02	
C : 0.42	c : 0.14	a : 0.12	U : 0.08	u : 0.08	A : 0.08	G : 0.04	
A : 0.21	U : 0.14	C : 0.14	g : 0.12	G : 0.12	u : 0.08	a : 0.08	c : 0.06	
C : 0.34	c : 0.31	U : 0.12	G : 0.12	A : 0.04	a : 0.02	u : 0.02	
C : 0.38	c : 0.27	U : 0.14	A : 0.06	a : 0.04	G : 0.04	g : 0.02	u : 0.02	
C : 0.36	c : 0.27	G : 0.14	A : 0.08	u : 0.06	U : 0.04	g : 0.02	
C : 0.59	c : 0.29	u : 0.04	A : 0.04	g : 0.02	
A : 0.23	U : 0.19	C : 0.17	a : 0.14	c : 0.10	g : 0.06	u : 0.04	G : 0.04	
G : 0.38	g : 0.21	C : 0.10	c : 0.08	A : 0.08	U : 0.06	a : 0.04	u : 0.02	
C : 0.40	c : 0.31	U : 0.10	G : 0.08	u : 0.04	A : 0.04	
C : 0.55	c : 0.29	u : 0.06	U : 0.04	A : 0.04	
C : 0.46	c : 0.25	A : 0.10	u : 0.06	G : 0.04	g : 0.04	U : 0.02	
C : 0.61	c : 0.29	u : 0.04	a : 0.02	A : 0.02	
A : 0.34	C : 0.19	c : 0.14	a : 0.14	G : 0.06	g : 0.06	U : 0.04	
G : 0.42	g : 0.31	C : 0.08	A : 0.06	U : 0.06	u : 0.04	
C : 0.53	c : 0.34	G : 0.10	u : 0.02	
C : 0.51	c : 0.34	A : 0.06	G : 0.04	U : 0.02	g : 0.02	
U : 0.34	C : 0.19	u : 0.17	c : 0.06	g : 0.06	A : 0.06	G : 0.06	a : 0.04	
C : 0.59	c : 0.31	A : 0.04	u : 0.02	G : 0.02	
C : 0.34	c : 0.14	U : 0.12	A : 0.10	a : 0.08	u : 0.08	G : 0.08	g : 0.02	
A : 0.25	U : 0.21	G : 0.17	a : 0.14	g : 0.12	u : 0.04	C : 0.02	c : 0.02	
C : 0.46	c : 0.31	U : 0.08	G : 0.06	A : 0.04	g : 0.02	
C : 0.46	c : 0.29	U : 0.10	u : 0.04	G : 0.04	A : 0.04	
C : 0.40	c : 0.27	U : 0.10	G : 0.08	A : 0.06	u : 0.04	a : 0.02	
C : 0.53	c : 0.29	A : 0.06	g : 0.04	G : 0.04	U : 0.02	

#score	994.1702127659571
#seq	47
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_UTR_m1_run2.nuc.txt

#NT
CCU	chr15:42138843-42139099(+)$1	256	15	18	9.0000
CCU	chr12:121177526-121177822(+)$1	296	12	15	9.0000
CCU	chr20:57274211-57274435(+)$1	224	141	144	9.0000
CCU	chr17:18148342-18148612(-)$1	270	17	20	9.0000
CCU	chr20:39803529-39803789(+)$1	260	14	17	9.0000
ccu	chr20:32245123-32245370(-)$1	247	0	3	9.0000
CCU	chr8:19709014-19709355(+)$1	341	69	72	9.0000
CCU	chr17:6588087-6588384(-)$1	297	89	92	9.0000
CCU	chr21:46914675-46914877(+)$1	202	19	22	9.0000
CCU	chr5:73923328-73923588(-)$1	260	13	16	9.0000
CCU	chr15:34819247-34819491(-)$1	244	138	141	9.0000
CCU	chr17:26873754-26874097(-)$1	343	2	5	9.0000
CCU	chr7:934986-935282(+)$1	296	0	3	9.0000
CCU	chr17:76121190-76121432(-)$1	242	12	15	9.0000
CCU	chr9:117063879-117064091(+)$1	212	41	44	9.0000
CCU	chr16:1819958-1820208(+)$1	250	1	4	9.0000
CCU	chr6:30711052-30711313(-)$1	261	19	22	9.0000
CCU	chr16:70696924-70697186(-)$1	262	14	17	9.0000
CCU	chr1:19401149-19401485(-)$1	336	57	60	9.0000
CCU	chr22:50961563-50961815(+)$1	252	18	21	9.0000
CCU	chr9:117063291-117063501(+)$1	210	21	24	9.0000
CCU	chr14:23794626-23794845(+)$1	219	45	48	9.0000
CCU	chr7:1028696-1028998(+)$1	302	9	12	9.0000
CCU	chr17:80197090-80197339(+)$1	249	6	9	9.0000
CCU	chr16:89815021-89815275(-)$1	254	39	42	9.0000
CCU	chr2:220239511-220239808(-)$1	297	4	7	9.0000
CCU	chr9:140343020-140343252(-)$1	232	23	26	9.0000
CCU	chr6:31641094-31641349(+)$1	255	8	11	9.0000
CCU	chr22:32012918-32013148(+)$1	230	14	17	9.0000
CCU	chr21:44473497-44473818(-)$1	321	3	6	9.0000
CCU	chr1:1564662-1564897(+)$1	235	2	5	9.0000
ccu	chr2:178087306-178087586(+)$1	280	33	36	9.0000
CCU	chr8:21894047-21894411(+)$1	364	15	18	9.0000
CCU	chr16:16243612-16243893(-)$1	281	12	15	9.0000
CCU	chr9:117053038-117053287(+)$1	249	26	29	9.0000
CCU	chr10:45479367-45479652(+)$1	285	4	7	9.0000
CCU	chr20:43563932-43564201(+)$1	269	163	166	9.0000
CCU	chrX:153678720-153678992(+)$1	272	7	10	9.0000
CCU	chr2:27589624-27589888(-)$1	264	17	20	9.0000
CCU	chr20:62325645-62325941(+)$1	296	8	11	9.0000
CCU	chr16:30003325-30003626(+)$1	301	33	36	9.0000
CCU	chr2:220074853-220075111(-)$1	258	24	27	9.0000
CCU	chr14:24114249-24114474(+)$1	225	0	3	9.0000
CCU	chr15:42139515-42139822(+)$1	307	0	3	9.0000
CCU	chr1:156219552-156219821(-)$1	269	15	18	9.0000
CCU	chr10:79569210-79569531(-)$1	321	0	3	9.0000
CCU	chr1:6694258-6694517(-)$1	259	1	4	9.0000
CCU	chr1:2494726-2495053(+)$1	327	18	21	9.0000
CCU	chr7:73009942-73010191(-)$1	249	64	67	9.0000
CCU	chr17:38178940-38179180(-)$1	240	9	12	9.0000
CCU	chr21:45746022-45746248(+)$1	226	6	9	9.0000
CCU	chr22:50656309-50656637(-)$1	328	26	29	9.0000
CCU	chr22:25024730-25025002(+)$1	272	35	38	9.0000
CCU	chr17:7127205-7127478(+)$1	273	12	15	9.0000
CCU	chr8:144694917-144695248(-)$1	331	28	31	9.0000
CCU	chr6:31639856-31640168(+)$1	312	13	16	9.0000
CCU	chr20:39802485-39802729(+)$1	244	28	31	9.0000
CCU	chr20:62326682-62326921(+)$1	239	1	4	9.0000
CCU	chr6:43473892-43474163(+)$1	271	42	45	9.0000
CCU	chr14:24029132-24029345(-)$1	213	49	52	9.0000
CCU	chr22:51010392-51010647(-)$1	255	6	9	9.0000
CCU	chr16:67978374-67978649(-)$1	275	5	8	9.0000
CCU	chr5:1463464-1463705(-)$1	241	10	13	9.0000
CCU	chr11:799370-799652(-)$1	282	39	42	9.0000
CCU	chr11:47738102-47738411(-)$1	309	26	29	9.0000
CCU	chr17:41605337-41605613(-)$1	276	10	13	9.0000
CCU	chr17:46058833-46059067(+)$1	234	5	8	9.0000
CCU	chr9:117052249-117052479(+)$1	230	6	9	9.0000
CCU	chr19:15491023-15491342(-)$1	319	8	11	9.0000
CCU	chr11:64536407-64536640(-)$1	233	9	12	9.0000
ccu	chr9:131018943-131019181(-)$1	238	130	133	9.0000
CCU	chr20:52183814-52184165(-)$1	351	48	51	9.0000
CCU	chr19:42409237-42409505(+)$1	268	34	37	9.0000
CCU	chr19:12875525-12875832(-)$1	307	30	33	9.0000
CCU	chr9:140342707-140342954(-)$1	247	22	25	9.0000
CCU	chr10:101370416-101370803(-)$1	387	34	37	9.0000
CCU	chr14:23794949-23795186(+)$1	237	26	29	9.0000
ccu	chr9:117027104-117027307(+)$1	203	10	13	9.0000
CCU	chr9:117068747-117068985(+)$1	238	16	19	9.0000
CCU	chr16:1819271-1819529(+)$1	258	8	11	9.0000
CCU	chr20:57275970-57276243(+)$1	273	37	40	9.0000
CCU	chr20:62522172-62522418(+)$1	246	4	7	9.0000
CCU	chr5:73923702-73923952(-)$1	250	185	188	9.0000
ccu	chr9:117046905-117047147(+)$1	242	43	46	9.0000
CCU	chr19:46274747-46275021(-)$1	274	41	44	9.0000
CCU	chr1:3397109-3397391(+)$1	282	43	46	9.0000
CCU	chr14:24651127-24651424(-)$1	297	2	5	9.0000
CCU	chr16:31200436-31200647(+)$1	211	47	50	9.0000
CCU	chr22:50684304-50684620(-)$1	316	3	6	9.0000
CCU	chr16:67976174-67976427(-)$1	253	5	8	9.0000
CCU	chr2:118676933-118677197(-)$1	264	17	20	9.0000
CCU	chr7:99638229-99638503(+)$1	274	105	108	9.0000
CCU	chr17:80202403-80202687(-)$1	284	38	41	9.0000
CCU	chr8:22432593-22432865(+)$1	272	19	22	9.0000
CCU	chr20:34292178-34292414(-)$1	236	26	29	9.0000
CCU	chr3:49454619-49454925(-)$1	306	92	95	9.0000
CCU	chr19:42410816-42411053(+)$1	237	11	14	9.0000
CCU	chr19:46318829-46319056(-)$1	227	35	38	9.0000
CCU	chr2:96940912-96941187(-)$1	275	47	50	9.0000

#otherMatches

#Struct PSSM
:::	chr20:62588029-62588319(-)$1	290	136	139	9.0000
e!!	chr15:42138843-42139099(+)$1	256	15	18	9.0000
ddd	chr12:121177526-121177822(+)$1	296	12	15	9.0000
EEY	chr20:57274211-57274435(+)$1	224	141	144	9.0000
MME	chr17:18148342-18148612(-)$1	270	17	20	9.0000
hhh	chr20:39803529-39803789(+)$1	260	14	17	9.0000
:::	chr20:32245123-32245370(-)$1	247	0	3	9.0000
ccc	chr8:19709014-19709355(+)$1	341	69	72	9.0000
pcc	chr17:6588087-6588384(-)$1	297	89	92	9.0000
FFB	chr21:46914675-46914877(+)$1	202	19	22	9.0000
BDD	chr5:73923328-73923588(-)$1	260	13	16	9.0000
$dd	chr15:34819247-34819491(-)$1	244	138	141	9.0000
:::	chr17:26873754-26874097(-)$1	343	2	5	9.0000
EEE	chr7:934986-935282(+)$1	296	0	3	9.0000
E{B	chr17:76121190-76121432(-)$1	242	12	15	9.0000
eee	chr9:117063879-117064091(+)$1	212	41	44	9.0000
B{G	chr16:1819958-1820208(+)$1	250	1	4	9.0000
EEE	chr6:30711052-30711313(-)$1	261	19	22	9.0000
JJJ	chr16:70696924-70697186(-)$1	262	14	17	9.0000
cc:	chr1:19401149-19401485(-)$1	336	57	60	9.0000
BBd	chr22:50961563-50961815(+)$1	252	18	21	9.0000
ccc	chr9:117063291-117063501(+)$1	210	21	24	9.0000
e[b	chr14:23794626-23794845(+)$1	219	45	48	9.0000
bbb	chr7:1028696-1028998(+)$1	302	9	12	9.0000
C::	chr17:80197090-80197339(+)$1	249	6	9	9.0000
!==	chr16:89815021-89815275(-)$1	254	39	42	9.0000
EEE	chr2:220239511-220239808(-)$1	297	4	7	9.0000
FFF	chr9:140343020-140343252(-)$1	232	23	26	9.0000
:::	chr6:31641094-31641349(+)$1	255	8	11	9.0000
vvv	chr22:32012918-32013148(+)$1	230	14	17	9.0000
::G	chr21:44473497-44473818(-)$1	321	3	6	9.0000
ddm	chr1:1564662-1564897(+)$1	235	2	5	9.0000
BKK	chr2:178087306-178087586(+)$1	280	33	36	9.0000
fff	chr8:21894047-21894411(+)$1	364	15	18	9.0000
JJJ	chr16:16243612-16243893(-)$1	281	12	15	9.0000
ccb	chr9:117053038-117053287(+)$1	249	26	29	9.0000
:::	chr10:45479367-45479652(+)$1	285	4	7	9.0000
ddd	chr20:43563932-43564201(+)$1	269	163	166	9.0000
:::	chrX:153678720-153678992(+)$1	272	7	10	9.0000
III	chr2:27589624-27589888(-)$1	264	17	20	9.0000
FFF	chr20:62325645-62325941(+)$1	296	8	11	9.0000
HHH	chr16:30003325-30003626(+)$1	301	33	36	9.0000
===	chr2:220074853-220075111(-)$1	258	24	27	9.0000
:::	chr14:24114249-24114474(+)$1	225	0	3	9.0000
:a!	chr15:42139515-42139822(+)$1	307	0	3	9.0000
c[c	chr1:156219552-156219821(-)$1	269	15	18	9.0000
BBF	chr10:79569210-79569531(-)$1	321	0	3	9.0000
DDD	chr1:6694258-6694517(-)$1	259	1	4	9.0000
odd	chr1:2494726-2495053(+)$1	327	18	21	9.0000
ccc	chr7:73009942-73010191(-)$1	249	64	67	9.0000
GGN	chr17:38178940-38179180(-)$1	240	9	12	9.0000
EE:	chr21:45746022-45746248(+)$1	226	6	9	9.0000
eee	chr22:50656309-50656637(-)$1	328	26	29	9.0000
eee	chr22:25024730-25025002(+)$1	272	35	38	9.0000
JJ{	chr17:7127205-7127478(+)$1	273	12	15	9.0000
DDD	chr8:144694917-144695248(-)$1	331	28	31	9.0000
ttt	chr6:31639856-31640168(+)$1	312	13	16	9.0000
ee2	chr20:39802485-39802729(+)$1	244	28	31	9.0000
FFF	chr20:62326682-62326921(+)$1	239	1	4	9.0000
fff	chr6:43473892-43474163(+)$1	271	42	45	9.0000
nnn	chr14:24029132-24029345(-)$1	213	49	52	9.0000
fff	chr22:51010392-51010647(-)$1	255	6	9	9.0000
DDD	chr16:67978374-67978649(-)$1	275	5	8	9.0000
b$$	chr5:1463464-1463705(-)$1	241	10	13	9.0000
===	chr11:799370-799652(-)$1	282	39	42	9.0000
ooo	chr11:47738102-47738411(-)$1	309	26	29	9.0000
HHH	chr17:41605337-41605613(-)$1	276	10	13	9.0000
ccu	chr17:46058833-46059067(+)$1	234	5	8	9.0000
:::	chr9:117052249-117052479(+)$1	230	6	9	9.0000
:gg	chr19:15491023-15491342(-)$1	319	8	11	9.0000
PPP	chr11:64536407-64536640(-)$1	233	9	12	9.0000
ddd	chr9:131018943-131019181(-)$1	238	130	133	9.0000
e::	chr20:52183814-52184165(-)$1	351	48	51	9.0000
hhh	chr19:42409237-42409505(+)$1	268	34	37	9.0000
NNN	chr19:12875525-12875832(-)$1	307	30	33	9.0000
HHH	chr9:140342707-140342954(-)$1	247	22	25	9.0000
eeq	chr10:101370416-101370803(-)$1	387	34	37	9.0000
GGG	chr14:23794949-23795186(+)$1	237	26	29	9.0000
f++	chr9:117027104-117027307(+)$1	203	10	13	9.0000
emm	chr9:117068747-117068985(+)$1	238	16	19	9.0000
BLL	chr16:1819271-1819529(+)$1	258	8	11	9.0000
CJJ	chr20:57275970-57276243(+)$1	273	37	40	9.0000
DDD	chr20:62522172-62522418(+)$1	246	4	7	9.0000
eee	chr5:73923702-73923952(-)$1	250	185	188	9.0000
eee	chr9:117046905-117047147(+)$1	242	43	46	9.0000
llc	chr19:46274747-46275021(-)$1	274	41	44	9.0000
cee	chr1:3397109-3397391(+)$1	282	43	46	9.0000
ccr	chr14:24651127-24651424(-)$1	297	2	5	9.0000
444	chr16:31200436-31200647(+)$1	211	47	50	9.0000
ee!	chr22:50684304-50684620(-)$1	316	3	6	9.0000
nnn	chr16:67976174-67976427(-)$1	253	5	8	9.0000
BBC	chr2:118676933-118677197(-)$1	264	17	20	9.0000
eee	chr7:99638229-99638503(+)$1	274	105	108	9.0000
pgg	chr17:80202403-80202687(-)$1	284	38	41	9.0000
mcc	chr8:22432593-22432865(+)$1	272	19	22	9.0000
OOO	chr20:34292178-34292414(-)$1	236	26	29	9.0000
fff	chr3:49454619-49454925(-)$1	306	92	95	9.0000
ddd	chr19:42410816-42411053(+)$1	237	11	14	9.0000
FFF	chr19:46318829-46319056(-)$1	227	35	38	9.0000
d""	chr2:96940912-96941187(-)$1	275	47	50	9.0000

#DB
...	chr20:62588029-62588319(-)$1	1	136	139	9.0000
(..	chr15:42138843-42139099(+)$1	1	15	18	9.0000
(((	chr12:121177526-121177822(+)$1	1	12	15	9.0000
)).	chr20:57274211-57274435(+)$1	1	141	144	9.0000
..(	chr17:18148342-18148612(-)$1	1	17	20	9.0000
(((	chr20:39803529-39803789(+)$1	1	14	17	9.0000
...	chr20:32245123-32245370(-)$1	1	0	3	9.0000
)))	chr8:19709014-19709355(+)$1	1	69	72	9.0000
.))	chr17:6588087-6588384(-)$1	1	89	92	9.0000
(((	chr21:46914675-46914877(+)$1	1	19	22	9.0000
(((	chr5:73923328-73923588(-)$1	1	13	16	9.0000
.((	chr15:34819247-34819491(-)$1	1	138	141	9.0000
...	chr17:26873754-26874097(-)$1	1	2	5	9.0000
(((	chr7:934986-935282(+)$1	1	0	3	9.0000
(.(	chr17:76121190-76121432(-)$1	1	12	15	9.0000
(((	chr9:117063879-117064091(+)$1	1	41	44	9.0000
(.(	chr16:1819958-1820208(+)$1	1	1	4	9.0000
(((	chr6:30711052-30711313(-)$1	1	19	22	9.0000
(((	chr16:70696924-70697186(-)$1	1	14	17	9.0000
)).	chr1:19401149-19401485(-)$1	1	57	60	9.0000
(((	chr22:50961563-50961815(+)$1	1	18	21	9.0000
(((	chr9:117063291-117063501(+)$1	1	21	24	9.0000
(.(	chr14:23794626-23794845(+)$1	1	45	48	9.0000
(((	chr7:1028696-1028998(+)$1	1	9	12	9.0000
(..	chr17:80197090-80197339(+)$1	1	6	9	9.0000
.((	chr16:89815021-89815275(-)$1	1	39	42	9.0000
(((	chr2:220239511-220239808(-)$1	1	4	7	9.0000
(((	chr9:140343020-140343252(-)$1	1	23	26	9.0000
...	chr6:31641094-31641349(+)$1	1	8	11	9.0000
...	chr22:32012918-32013148(+)$1	1	14	17	9.0000
..(	chr21:44473497-44473818(-)$1	1	3	6	9.0000
((.	chr1:1564662-1564897(+)$1	1	2	5	9.0000
(..	chr2:178087306-178087586(+)$1	1	33	36	9.0000
)))	chr8:21894047-21894411(+)$1	1	15	18	9.0000
(((	chr16:16243612-16243893(-)$1	1	12	15	9.0000
(((	chr9:117053038-117053287(+)$1	1	26	29	9.0000
...	chr10:45479367-45479652(+)$1	1	4	7	9.0000
(((	chr20:43563932-43564201(+)$1	1	163	166	9.0000
...	chrX:153678720-153678992(+)$1	1	7	10	9.0000
(((	chr2:27589624-27589888(-)$1	1	17	20	9.0000
(((	chr20:62325645-62325941(+)$1	1	8	11	9.0000
(((	chr16:30003325-30003626(+)$1	1	33	36	9.0000
(((	chr2:220074853-220075111(-)$1	1	24	27	9.0000
...	chr14:24114249-24114474(+)$1	1	0	3	9.0000
.(.	chr15:42139515-42139822(+)$1	1	0	3	9.0000
(.(	chr1:156219552-156219821(-)$1	1	15	18	9.0000
(((	chr10:79569210-79569531(-)$1	1	0	3	9.0000
(((	chr1:6694258-6694517(-)$1	1	1	4	9.0000
.))	chr1:2494726-2495053(+)$1	1	18	21	9.0000
)))	chr7:73009942-73010191(-)$1	1	64	67	9.0000
((.	chr17:38178940-38179180(-)$1	1	9	12	9.0000
((.	chr21:45746022-45746248(+)$1	1	6	9	9.0000
(((	chr22:50656309-50656637(-)$1	1	26	29	9.0000
(((	chr22:25024730-25025002(+)$1	1	35	38	9.0000
((.	chr17:7127205-7127478(+)$1	1	12	15	9.0000
(((	chr8:144694917-144695248(-)$1	1	28	31	9.0000
...	chr6:31639856-31640168(+)$1	1	13	16	9.0000
)).	chr20:39802485-39802729(+)$1	1	28	31	9.0000
(((	chr20:62326682-62326921(+)$1	1	1	4	9.0000
(((	chr6:43473892-43474163(+)$1	1	42	45	9.0000
...	chr14:24029132-24029345(-)$1	1	49	52	9.0000
(((	chr22:51010392-51010647(-)$1	1	6	9	9.0000
(((	chr16:67978374-67978649(-)$1	1	5	8	9.0000
(..	chr5:1463464-1463705(-)$1	1	10	13	9.0000
(((	chr11:799370-799652(-)$1	1	39	42	9.0000
...	chr11:47738102-47738411(-)$1	1	26	29	9.0000
(((	chr17:41605337-41605613(-)$1	1	10	13	9.0000
((.	chr17:46058833-46059067(+)$1	1	5	8	9.0000
...	chr9:117052249-117052479(+)$1	1	6	9	9.0000
.((	chr19:15491023-15491342(-)$1	1	8	11	9.0000
...	chr11:64536407-64536640(-)$1	1	9	12	9.0000
)))	chr9:131018943-131019181(-)$1	1	130	133	9.0000
)..	chr20:52183814-52184165(-)$1	1	48	51	9.0000
(((	chr19:42409237-42409505(+)$1	1	34	37	9.0000
...	chr19:12875525-12875832(-)$1	1	30	33	9.0000
(((	chr9:140342707-140342954(-)$1	1	22	25	9.0000
((.	chr10:101370416-101370803(-)$1	1	34	37	9.0000
(((	chr14:23794949-23795186(+)$1	1	26	29	9.0000
(..	chr9:117027104-117027307(+)$1	1	10	13	9.0000
(..	chr9:117068747-117068985(+)$1	1	16	19	9.0000
(..	chr16:1819271-1819529(+)$1	1	8	11	9.0000
(((	chr20:57275970-57276243(+)$1	1	37	40	9.0000
(((	chr20:62522172-62522418(+)$1	1	4	7	9.0000
(((	chr5:73923702-73923952(-)$1	1	185	188	9.0000
(((	chr9:117046905-117047147(+)$1	1	43	46	9.0000
..)	chr19:46274747-46275021(-)$1	1	41	44	9.0000
(((	chr1:3397109-3397391(+)$1	1	43	46	9.0000
((.	chr14:24651127-24651424(-)$1	1	2	5	9.0000
...	chr16:31200436-31200647(+)$1	1	47	50	9.0000
((.	chr22:50684304-50684620(-)$1	1	3	6	9.0000
...	chr16:67976174-67976427(-)$1	1	5	8	9.0000
(((	chr2:118676933-118677197(-)$1	1	17	20	9.0000
)))	chr7:99638229-99638503(+)$1	1	105	108	9.0000
.))	chr17:80202403-80202687(-)$1	1	38	41	9.0000
.))	chr8:22432593-22432865(+)$1	1	19	22	9.0000
...	chr20:34292178-34292414(-)$1	1	26	29	9.0000
)))	chr3:49454619-49454925(-)$1	1	92	95	9.0000
(((	chr19:42410816-42411053(+)$1	1	11	14	9.0000
(((	chr19:46318829-46319056(-)$1	1	35	38	9.0000
(..	chr2:96940912-96941187(-)$1	1	47	50	9.0000

#PSSM
C : 0.95	c : 0.05	
C : 0.95	c : 0.05	
U : 0.95	u : 0.05	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_transcript_m1_run2.nuc.txt

#NT
UUUUUUUUU	chr22:38880166-38880382(-)$1	216	76	85	21.7540
UUUUUCUUU	chr5:179157252-179157506(+)$1	254	28	37	23.3934
GUUUUCUUU	chr12:46757660-46757886(-)$1	226	88	97	18.7213
UUUUUAUUU	chr1:228285797-228286013(+)$1	216	76	85	20.8524
UUUUUUUUU	chr3:133307565-133307854(+)$1	289	76	85	21.7540
UUUUUCUUU	chr17:62496986-62497258(-)$1	272	188	197	23.3934
UUUUUUUUU	chrX:38664742-38664999(+)$1	257	75	84	21.7540
UUUUUUUUU	chr1:113455371-113455645(-)$1	274	93	102	21.7540
UUUUUCUUC	chr17:42550873-42551160(-)$1	287	19	28	18.8852
UUUUUUUUU	chr1:115259753-115259995(-)$1	242	92	101	21.7540
UUUUUUUUU	chr2:54895849-54896114(+)$1	265	76	85	21.7540
uuuuuguuu	chr2:42406503-42406757(+)$1	254	242	251	20.7704
UUUUUCUCU	chr2:10923960-10924221(-)$1	261	104	113	19.2950
UUUAUCUUU	chr12:12269047-12269348(-)$1	301	88	97	19.0491
UUUUUGUUU	chr7:2704272-2704516(+)$1	244	14	23	20.7704
UUUUUUUUU	chr12:31434897-31435153(-)$1	256	4	13	21.7540
UUUUUUUUU	chr1:45976773-45977028(-)$1	255	90	99	21.7540
UUUUUCUCU	chr12:89742056-89742309(-)$1	253	57	66	19.2950
uuuuucuuc	chr12:69213066-69213319(+)$1	253	210	219	18.8852
uuuuucuuu	chr17:40126359-40126608(+)$1	249	88	97	23.3934
UUUUUGUUU	chr10:73575977-73576200(-)$1	223	91	100	20.7704
UUUUUGUUU	chr6:64290902-64291135(+)$1	233	126	135	20.7704
UUUUUCUCU	chr4:155525741-155526001(-)$1	260	79	88	19.2950
UUUUUCAUU	chr17:57917077-57917349(+)$1	272	16	25	18.5573
UUUUUCUUU	chr2:191799707-191799973(+)$1	266	89	98	23.3934
UUUAUCuuu	chr16:30003326-30003592(+)$1	266	79	88	19.0491
UUUUUAUUU	chr3:184052905-184053144(+)$1	239	91	100	20.8524
UUUCUCUUU	chr14:77935627-77935890(+)$1	263	140	149	19.1311
UUUUUCUUC	chr16:15177981-15178216(-)$1	235	162	171	18.8852
UUUUUAUUU	chr20:34327103-34327341(-)$1	238	187	196	20.8524
UUUUUCUUU	chr5:96369774-96370017(+)$1	243	90	99	23.3934
UUUUUUUUU	chr7:94285820-94286084(+)$1	264	92	101	21.7540
UGUUUCUUU	chr18:29128431-29128695(+)$1	264	82	91	18.5573
UUUUUUUUU	chr6:132212804-132213037(+)$1	233	84	93	21.7540
UUUCUCUUU	chr6:138412299-138412582(-)$1	283	86	95	19.1311
UUUUUUUUU	chr4:187509196-187509476(-)$1	280	180	189	21.7540
UUUUUCUUU	chr1:182352092-182352338(-)$1	246	91	100	23.3934
UUUUUCUCU	chr4:155533443-155533684(-)$1	241	83	92	19.2950
UUUUUCUUU	chr11:130014395-130014634(+)$1	239	82	91	23.3934
UUUUUCUUU	chr4:74286829-74287064(+)$1	235	31	40	23.3934
UUUUUCUUU	chr5:42800247-42800493(-)$1	246	35	44	23.3934
UUUUUUUUU	chr19:19617622-19617863(+)$1	241	93	102	21.7540
UUUUUCUUU	chr19:17693118-17693366(+)$1	248	91	100	23.3934
GUUUUCUUU	chr1:55315551-55315809(-)$1	258	239	248	18.7213
UUUUUUUUU	chr2:188330872-188331117(-)$1	245	90	99	21.7540
UUUUUUUUU	chr16:18803008-18803235(-)$1	227	50	59	21.7540
UUUUUCUUU	chr4:74286767-74287014(+)$1	247	93	102	23.3934
UUUUUCUUU	chr17:21218103-21218409(+)$1	306	96	105	23.3934
uuuuuauuu	chr18:48701665-48701922(-)$1	257	86	95	20.8524
UUUUUCUUU	chr11:130014463-130014681(+)$1	218	14	23	23.3934
UUUUUCUAU	chrX:132669863-132670077(-)$1	214	2	11	18.9672
UUUUUCUUU	chr3:149683690-149683950(-)$1	260	84	93	23.3934
uuuuuuuuu	chr19:10397118-10397374(+)$1	256	90	99	21.7540
UUUUUUUUU	chr4:177250106-177250360(+)$1	254	95	104	21.7540
uuucucuuu	chr14:50361088-50361342(+)$1	254	51	60	19.1311
UUUUUCUCU	chr7:128409388-128409640(+)$1	252	98	107	19.2950
UUUGUCUUU	chr8:22279035-22279274(+)$1	239	69	78	18.9672
UUUUUCUUU	chr2:64861231-64861477(-)$1	246	93	102	23.3934
UUUUUCUUU	chr16:72819588-72819826(-)$1	238	101	110	23.3934
UUUUUAUUU	chr20:43955184-43955430(-)$1	246	97	106	20.8524

#otherMatches

#Struct PSSM
iiiiiiii"	chr19:3052977-3053221(-)$1	244	94	103	23.3934
:::::::::	chr22:38880166-38880382(-)$1	216	76	85	21.7540
h&&&&&&&e	chr5:179157252-179157506(+)$1	254	28	37	23.3934
4444ccc44	chr12:46757660-46757886(-)$1	226	88	97	18.7213
e[eeeeenn	chr1:228285797-228286013(+)$1	216	76	85	20.8524
ee]iiiiii	chr3:133307565-133307854(+)$1	289	76	85	21.7540
:::::::::	chr17:62496986-62497258(-)$1	272	188	197	23.3934
dxxxxxxxx	chrX:38664742-38664999(+)$1	257	75	84	21.7540
"""ddddnn	chr1:113455371-113455645(-)$1	274	93	102	21.7540
:::::::::	chr17:42550873-42551160(-)$1	287	19	28	18.8852
=========	chr1:115259753-115259995(-)$1	242	92	101	21.7540
fff!!cccx	chr2:54895849-54896114(+)$1	265	76	85	21.7540
=========	chr2:42406503-42406757(+)$1	254	242	251	20.7704
####eeeee	chr2:10923960-10924221(-)$1	261	104	113	19.2950
ccc22ccc]	chr12:12269047-12269348(-)$1	301	88	97	19.0491
hhhh[dddd	chr7:2704272-2704516(+)$1	244	14	23	20.7704
:::::::::	chr12:31434897-31435153(-)$1	256	4	13	21.7540
:::::::::	chr1:45976773-45977028(-)$1	255	90	99	21.7540
nnnnbb:::	chr12:89742056-89742309(-)$1	253	57	66	19.2950
GGGGGGG::	chr12:69213066-69213319(+)$1	253	210	219	18.8852
==vvvvvvv	chr17:40126359-40126608(+)$1	249	88	97	23.3934
:::eeeee"	chr10:73575977-73576200(-)$1	223	91	100	20.7704
hhhhhh555	chr6:64290902-64291135(+)$1	233	126	135	20.7704
E::::::::	chr4:155525741-155526001(-)$1	260	79	88	19.2950
EEEFFFFFF	chr17:57917077-57917349(+)$1	272	16	25	18.5573
:::::::::	chr2:191799707-191799973(+)$1	266	89	98	23.3934
d^^^^^^^^	chr16:30003326-30003592(+)$1	266	79	88	19.0491
&&&&&eeee	chr3:184052905-184053144(+)$1	239	91	100	20.8524
ccc$$$$$f	chr14:77935627-77935890(+)$1	263	140	149	19.1311
HHHHHHHH@	chr16:15177981-15178216(-)$1	235	162	171	18.8852
gg4444iii	chr20:34327103-34327341(-)$1	238	187	196	20.8524
wwwwwwwww	chr5:96369774-96370017(+)$1	243	90	99	23.3934
iiii+++++	chr7:94285820-94286084(+)$1	264	92	101	21.7540
oooooa22f	chr18:29128431-29128695(+)$1	264	82	91	18.5573
>>>>>>>>>	chr6:132212804-132213037(+)$1	233	84	93	21.7540
OOOHHHHHH	chr6:138412299-138412582(-)$1	283	86	95	19.1311
^^^^^^^^^	chr4:187509196-187509476(-)$1	280	180	189	21.7540
ffffff:::	chr1:182352092-182352338(-)$1	246	91	100	23.3934
3ffffff::	chr4:155533443-155533684(-)$1	241	83	92	19.2950
d####eeee	chr11:130014395-130014634(+)$1	239	82	91	23.3934
fffff22hh	chr4:74286829-74287064(+)$1	235	31	40	23.3934
^^^^^^^^^	chr5:42800247-42800493(-)$1	246	35	44	23.3934
+++++++dd	chr19:19617622-19617863(+)$1	241	93	102	21.7540
iii::::::	chr19:17693118-17693366(+)$1	248	91	100	23.3934
fffffmmmm	chr1:55315551-55315809(-)$1	258	239	248	18.7213
:JJJJJJJJ	chr2:188330872-188331117(-)$1	245	90	99	21.7540
::iiiiiii	chr16:18803008-18803235(-)$1	227	50	59	21.7540
fffff22ee	chr4:74286767-74287014(+)$1	247	93	102	23.3934
qqqqqqqbb	chr17:21218103-21218409(+)$1	306	96	105	23.3934
ooooeeeee	chr18:48701665-48701922(-)$1	257	86	95	20.8524
d####eeee	chr11:130014463-130014681(+)$1	218	14	23	23.3934
::::::::J	chrX:132669863-132670077(-)$1	214	2	11	18.9672
:::::::::	chr3:149683690-149683950(-)$1	260	84	93	23.3934
oooooobb3	chr19:10397118-10397374(+)$1	256	90	99	21.7540
66666gggg	chr4:177250106-177250360(+)$1	254	95	104	21.7540
gg::::::e	chr14:50361088-50361342(+)$1	254	51	60	19.1311
77ffffff:	chr7:128409388-128409640(+)$1	252	98	107	19.2950
eeeffffff	chr8:22279035-22279274(+)$1	239	69	78	18.9672
ggg::::::	chr2:64861231-64861477(-)$1	246	93	102	23.3934
@@@@@@@@@	chr16:72819588-72819826(-)$1	238	101	110	23.3934
444======	chr20:43955184-43955430(-)$1	246	97	106	20.8524

#DB
((((((((.	chr19:3052977-3053221(-)$1	1	94	103	23.3934
.........	chr22:38880166-38880382(-)$1	1	76	85	21.7540
(.......(	chr5:179157252-179157506(+)$1	1	28	37	23.3934
....)))..	chr12:46757660-46757886(-)$1	1	88	97	18.7213
(.(((((..	chr1:228285797-228286013(+)$1	1	76	85	20.8524
)).))))))	chr3:133307565-133307854(+)$1	1	76	85	21.7540
.........	chr17:62496986-62497258(-)$1	1	188	197	23.3934
(........	chrX:38664742-38664999(+)$1	1	75	84	21.7540
...((((..	chr1:113455371-113455645(-)$1	1	93	102	21.7540
.........	chr17:42550873-42551160(-)$1	1	19	28	18.8852
)))))))))	chr1:115259753-115259995(-)$1	1	92	101	21.7540
(((..(((.	chr2:54895849-54896114(+)$1	1	76	85	21.7540
)))))))))	chr2:42406503-42406757(+)$1	1	242	251	20.7704
....(((((	chr2:10923960-10924221(-)$1	1	104	113	19.2950
)))..))).	chr12:12269047-12269348(-)$1	1	88	97	19.0491
((((.((((	chr7:2704272-2704516(+)$1	1	14	23	20.7704
.........	chr12:31434897-31435153(-)$1	1	4	13	21.7540
.........	chr1:45976773-45977028(-)$1	1	90	99	21.7540
....))...	chr12:89742056-89742309(-)$1	1	57	66	19.2950
)))))))..	chr12:69213066-69213319(+)$1	1	210	219	18.8852
((.......	chr17:40126359-40126608(+)$1	1	88	97	23.3934
...(((((.	chr10:73575977-73576200(-)$1	1	91	100	20.7704
))))))...	chr6:64290902-64291135(+)$1	1	126	135	20.7704
)........	chr4:155525741-155526001(-)$1	1	79	88	19.2950
(((((((((	chr17:57917077-57917349(+)$1	1	16	25	18.5573
.........	chr2:191799707-191799973(+)$1	1	89	98	23.3934
(........	chr16:30003326-30003592(+)$1	1	79	88	19.0491
.....((((	chr3:184052905-184053144(+)$1	1	91	100	20.8524
(((.....(	chr14:77935627-77935890(+)$1	1	140	149	19.1311
)))))))).	chr16:15177981-15178216(-)$1	1	162	171	18.8852
))....)))	chr20:34327103-34327341(-)$1	1	187	196	20.8524
.........	chr5:96369774-96370017(+)$1	1	90	99	23.3934
((((.....	chr7:94285820-94286084(+)$1	1	92	101	21.7540
.....)..)	chr18:29128431-29128695(+)$1	1	82	91	18.5573
.........	chr6:132212804-132213037(+)$1	1	84	93	21.7540
...((((((	chr6:138412299-138412582(-)$1	1	86	95	19.1311
.........	chr4:187509196-187509476(-)$1	1	180	189	21.7540
))))))...	chr1:182352092-182352338(-)$1	1	91	100	23.3934
.))))))..	chr4:155533443-155533684(-)$1	1	83	92	19.2950
(....((((	chr11:130014395-130014634(+)$1	1	82	91	23.3934
)))))..))	chr4:74286829-74287064(+)$1	1	31	40	23.3934
.........	chr5:42800247-42800493(-)$1	1	35	44	23.3934
.......((	chr19:19617622-19617863(+)$1	1	93	102	21.7540
)))......	chr19:17693118-17693366(+)$1	1	91	100	23.3934
(((((....	chr1:55315551-55315809(-)$1	1	239	248	18.7213
.((((((((	chr2:188330872-188331117(-)$1	1	90	99	21.7540
..(((((((	chr16:18803008-18803235(-)$1	1	50	59	21.7540
)))))..))	chr4:74286767-74287014(+)$1	1	93	102	23.3934
.......))	chr17:21218103-21218409(+)$1	1	96	105	23.3934
....)))))	chr18:48701665-48701922(-)$1	1	86	95	20.8524
(....((((	chr11:130014463-130014681(+)$1	1	14	23	23.3934
........(	chrX:132669863-132670077(-)$1	1	2	11	18.9672
.........	chr3:149683690-149683950(-)$1	1	84	93	23.3934
......)).	chr19:10397118-10397374(+)$1	1	90	99	21.7540
.....))))	chr4:177250106-177250360(+)$1	1	95	104	21.7540
))......(	chr14:50361088-50361342(+)$1	1	51	60	19.1311
..)))))).	chr7:128409388-128409640(+)$1	1	98	107	19.2950
(((((((((	chr8:22279035-22279274(+)$1	1	69	78	18.9672
)))......	chr2:64861231-64861477(-)$1	1	93	102	23.3934
.........	chr16:72819588-72819826(-)$1	1	101	110	23.3934
...))))))	chr20:43955184-43955430(-)$1	1	97	106	20.8524

#PSSM
U : 0.85	u : 0.11	G : 0.03	
U : 0.86	u : 0.11	G : 0.01	
U : 0.88	u : 0.11	
U : 0.80	u : 0.09	A : 0.03	C : 0.03	c : 0.01	G : 0.01	
U : 0.88	u : 0.11	
C : 0.54	U : 0.24	A : 0.06	G : 0.04	c : 0.04	g : 0.01	a : 0.01	u : 0.01	
U : 0.86	u : 0.11	A : 0.01	
U : 0.78	u : 0.11	C : 0.08	A : 0.01	
U : 0.85	u : 0.09	C : 0.03	c : 0.01	

#score	1294.2131147540997
#seq	61
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF324PNB_SSB_transcript_m1_run2.nuc.txt

#NT
uccu	chr7:139025410-139025623(+)$1	213	67	71	12.0000
UCCU	chr11:75111333-75111543(+)$1	210	1	5	12.0000
UCCU	chr16:28883213-28883433(+)$1	220	138	142	12.0000
UCCU	chr11:46783868-46784084(-)$1	216	22	26	12.0000
UCCU	chr9:35657871-35658107(-)$1	236	113	117	12.0000
UCCU	chr14:20811427-20811645(-)$1	218	120	124	12.0000
UCCU	chr16:88788074-88788316(-)$1	242	30	34	12.0000
UCCU	chr11:10822967-10823189(-)$1	222	142	146	12.0000
UCCU	chr9:35657817-35658020(-)$1	203	26	30	12.0000
UCCU	chr14:20811361-20811568(-)$1	207	43	47	12.0000
UCCU	chr15:79152827-79153041(+)$1	214	37	41	12.0000
UCCU	chr22:22050387-22050635(+)$1	248	104	108	12.0000
UCCU	chr14:20811400-20811612(-)$1	212	87	91	12.0000
UCCU	chr20:17943479-17943691(-)$1	212	168	172	12.0000
UCCU	chr9:35657837-35658049(-)$1	212	55	59	12.0000
UCCU	chr17:79661996-79662244(+)$1	248	123	127	12.0000
UCCU	chr17:75085333-75085563(+)$1	230	72	76	12.0000
UCCU	chr19:10220821-10221029(+)$1	208	163	167	12.0000
UCCU	chr19:47247406-47247654(-)$1	248	99	103	12.0000
UCCU	chr14:20811412-20811623(-)$1	211	98	102	12.0000
UCCU	chr14:20811378-20811600(-)$1	222	75	79	12.0000
uccu	chr3:45730423-45730653(-)$1	230	149	153	12.0000
UCCU	chr14:21860212-21860514(-)$1	302	3	7	12.0000
UCCU	chr17:75085328-75085532(+)$1	204	77	81	12.0000
UCCU	chr14:20811368-20811578(-)$1	210	53	57	12.0000
uccu	chr7:101503687-101503965(+)$1	278	249	253	12.0000
UCCU	chr16:28883240-28883466(+)$1	226	111	115	12.0000
UCCU	chr2:133014425-133014672(-)$1	247	40	44	12.0000
UCCU	chr3:47451224-47451479(+)$1	255	90	94	12.0000
UCCU	chr15:45490680-45490945(-)$1	265	247	251	12.0000
UCCU	chr11:46783901-46784105(-)$1	204	43	47	12.0000
UCCU	chr11:46783862-46784068(-)$1	206	6	10	12.0000
UCCU	chr14:20811327-20811534(-)$1	207	9	13	12.0000
UCCU	chr9:35657833-35658037(-)$1	204	43	47	12.0000
UCCU	chr14:20811359-20811561(-)$1	202	36	40	12.0000
UCCU	chr5:135416132-135416339(-)$1	207	45	49	12.0000
UCCU	chr1:28905188-28905420(-)$1	232	159	163	12.0000
UCCU	chr9:35657820-35658022(-)$1	202	28	32	12.0000
UCCU	chr15:45492498-45492754(-)$1	256	52	56	12.0000
UCCU	chr14:58706570-58706791(-)$1	221	69	73	12.0000
UCCU	chr3:160232646-160232893(-)$1	247	181	185	12.0000
UCCU	chr6:31802963-31803166(+)$1	203	189	193	12.0000
UCCU	chr2:27273540-27273783(+)$1	243	5	9	12.0000
UCCU	chr16:28883206-28883413(+)$1	207	145	149	12.0000
UCCU	chr12:6619586-6619797(+)$1	211	62	66	12.0000
uccu	chr13:41634763-41635004(-)$1	241	84	88	12.0000
UCCU	chr1:31440942-31441177(-)$1	235	222	226	12.0000
uccu	chr8:67025537-67025807(+)$1	270	106	110	12.0000
UCCU	chr17:74557643-74557862(+)$1	219	24	28	12.0000
UCCU	chr17:7480028-7480277(+)$1	249	168	172	12.0000
UCCU	chr19:10220829-10221054(+)$1	225	155	159	12.0000
UCCU	chr15:79152797-79153015(+)$1	218	67	71	12.0000
UCCU	chr1:45242062-45242335(+)$1	273	86	90	12.0000
UCCU	chr16:28883233-28883440(+)$1	207	118	122	12.0000
UCCU	chr6:31802939-31803163(+)$1	224	213	217	12.0000
UCCU	chr6:31802966-31803178(+)$1	212	186	190	12.0000
uccu	chr8:144624224-144624462(+)$1	238	146	150	12.0000
UCCU	chr6:26988058-26988281(+)$1	223	21	25	12.0000
UCCU	chr11:10823025-10823255(-)$1	230	208	212	12.0000
UCCU	chr6:31802978-31803200(+)$1	222	174	178	12.0000
UCCU	chr16:1365024-1365299(+)$1	275	3	7	12.0000
UCCU	chr14:20811347-20811550(-)$1	203	25	29	12.0000
UCCU	chr1:161582399-161582687(+)$1	288	193	197	12.0000
UCCU	chr1:22149953-22150209(-)$1	256	114	118	12.0000
UCCU	chr5:180618651-180618866(-)$1	215	192	196	12.0000
UCCU	chr9:35657849-35658060(-)$1	211	66	70	12.0000
UCCU	chrX:135961325-135961534(-)$1	209	155	159	12.0000
uccu	chr7:139025352-139025586(+)$1	234	125	129	12.0000
UCCU	chr11:75111343-75111618(+)$1	275	203	207	12.0000
UCCU	chr5:140090795-140091039(+)$1	244	156	160	12.0000
uccu	chr5:109035388-109035595(-)$1	207	151	155	12.0000
UCCU	chr9:35657801-35658017(-)$1	216	23	27	12.0000
UCCU	chr9:137029517-137029729(-)$1	212	11	15	12.0000
UCCU	chr5:135416145-135416383(-)$1	238	89	93	12.0000
uccu	chr14:90178792-90179074(+)$1	282	153	157	12.0000
UCCU	chr5:180618625-180618831(-)$1	206	157	161	12.0000
UCCU	chr16:71792225-71792452(-)$1	227	174	178	12.0000
UCCU	chr11:64022988-64023232(+)$1	244	9	13	12.0000
UCCU	chr9:137029530-137029741(-)$1	211	23	27	12.0000
UCCU	chr17:73559156-73559402(+)$1	246	20	24	12.0000
UCCU	chr17:7480095-7480361(+)$1	266	101	105	12.0000
uccu	chr3:57605171-57605397(+)$1	226	213	217	12.0000

#otherMatches

#Struct PSSM
pddd	chr3:45730453-45730670(-)$1	217	166	170	12.0000
dddd	chr7:139025410-139025623(+)$1	213	67	71	12.0000
:ccc	chr11:75111333-75111543(+)$1	210	1	5	12.0000
ddd]	chr16:28883213-28883433(+)$1	220	138	142	12.0000
GGGG	chr11:46783868-46784084(-)$1	216	22	26	12.0000
hhhh	chr9:35657871-35658107(-)$1	236	113	117	12.0000
nnnn	chr14:20811427-20811645(-)$1	218	120	124	12.0000
3bb]	chr16:88788074-88788316(-)$1	242	30	34	12.0000
eeee	chr11:10822967-10823189(-)$1	222	142	146	12.0000
hhhh	chr9:35657817-35658020(-)$1	203	26	30	12.0000
nnnn	chr14:20811361-20811568(-)$1	207	43	47	12.0000
vvve	chr15:79152827-79153041(+)$1	214	37	41	12.0000
ttgg	chr22:22050387-22050635(+)$1	248	104	108	12.0000
nnnn	chr14:20811400-20811612(-)$1	212	87	91	12.0000
gggg	chr20:17943479-17943691(-)$1	212	168	172	12.0000
hhhh	chr9:35657837-35658049(-)$1	212	55	59	12.0000
mbb]	chr17:79661996-79662244(+)$1	248	123	127	12.0000
dddd	chr17:75085333-75085563(+)$1	230	72	76	12.0000
ccc[	chr19:10220821-10221029(+)$1	208	163	167	12.0000
vvvv	chr19:47247406-47247654(-)$1	248	99	103	12.0000
nnnn	chr14:20811412-20811623(-)$1	211	98	102	12.0000
nnnn	chr14:20811378-20811600(-)$1	222	75	79	12.0000
pddd	chr3:45730423-45730653(-)$1	230	149	153	12.0000
:FFF	chr14:21860212-21860514(-)$1	302	3	7	12.0000
dddd	chr17:75085328-75085532(+)$1	204	77	81	12.0000
nnnn	chr14:20811368-20811578(-)$1	210	53	57	12.0000
FFFF	chr7:101503687-101503965(+)$1	278	249	253	12.0000
ffff	chr16:28883240-28883466(+)$1	226	111	115	12.0000
NNNN	chr2:133014425-133014672(-)$1	247	40	44	12.0000
feee	chr3:47451224-47451479(+)$1	255	90	94	12.0000
7777	chr15:45490680-45490945(-)$1	265	247	251	12.0000
FFFF	chr11:46783901-46784105(-)$1	204	43	47	12.0000
GGGG	chr11:46783862-46784068(-)$1	206	6	10	12.0000
GGGG	chr14:20811327-20811534(-)$1	207	9	13	12.0000
nnnf	chr9:35657833-35658037(-)$1	204	43	47	12.0000
bb]b	chr14:20811359-20811561(-)$1	202	36	40	12.0000
PPPP	chr5:135416132-135416339(-)$1	207	45	49	12.0000
bccc	chr1:28905188-28905420(-)$1	232	159	163	12.0000
hhhh	chr9:35657820-35658022(-)$1	202	28	32	12.0000
bbGG	chr15:45492498-45492754(-)$1	256	52	56	12.0000
[ccc	chr14:58706570-58706791(-)$1	221	69	73	12.0000
]eee	chr3:160232646-160232893(-)$1	247	181	185	12.0000
flll	chr6:31802963-31803166(+)$1	203	189	193	12.0000
:eee	chr2:27273540-27273783(+)$1	243	5	9	12.0000
wwww	chr16:28883206-28883413(+)$1	207	145	149	12.0000
ffff	chr12:6619586-6619797(+)$1	211	62	66	12.0000
"eee	chr13:41634763-41635004(-)$1	241	84	88	12.0000
IIII	chr1:31440942-31441177(-)$1	235	222	226	12.0000
eeee	chr8:67025537-67025807(+)$1	270	106	110	12.0000
::::	chr17:74557643-74557862(+)$1	219	24	28	12.0000
llld	chr17:7480028-7480277(+)$1	249	168	172	12.0000
hhhh	chr19:10220829-10221054(+)$1	225	155	159	12.0000
ccmm	chr15:79152797-79153015(+)$1	218	67	71	12.0000
gFFF	chr1:45242062-45242335(+)$1	273	86	90	12.0000
ddd]	chr16:28883233-28883440(+)$1	207	118	122	12.0000
flll	chr6:31802939-31803163(+)$1	224	213	217	12.0000
flll	chr6:31802966-31803178(+)$1	212	186	190	12.0000
e333	chr8:144624224-144624462(+)$1	238	146	150	12.0000
ccce	chr6:26988058-26988281(+)$1	223	21	25	12.0000
eeee	chr11:10823025-10823255(-)$1	230	208	212	12.0000
====	chr6:31802978-31803200(+)$1	222	174	178	12.0000
GGGG	chr16:1365024-1365299(+)$1	275	3	7	12.0000
GGGG	chr14:20811347-20811550(-)$1	203	25	29	12.0000
ccc!	chr1:161582399-161582687(+)$1	288	193	197	12.0000
hhh[	chr1:22149953-22150209(-)$1	256	114	118	12.0000
FFFF	chr5:180618651-180618866(-)$1	215	192	196	12.0000
hhhh	chr9:35657849-35658060(-)$1	211	66	70	12.0000
}BB\	chrX:135961325-135961534(-)$1	209	155	159	12.0000
dddd	chr7:139025352-139025586(+)$1	234	125	129	12.0000
dddd	chr11:75111343-75111618(+)$1	275	203	207	12.0000
GGG:	chr5:140090795-140091039(+)$1	244	156	160	12.0000
::::	chr5:109035388-109035595(-)$1	207	151	155	12.0000
hhhh	chr9:35657801-35658017(-)$1	216	23	27	12.0000
eeee	chr9:137029517-137029729(-)$1	212	11	15	12.0000
PPPP	chr5:135416145-135416383(-)$1	238	89	93	12.0000
33a]	chr14:90178792-90179074(+)$1	282	153	157	12.0000
ff[c	chr5:180618625-180618831(-)$1	206	157	161	12.0000
facc	chr16:71792225-71792452(-)$1	227	174	178	12.0000
ddd[	chr11:64022988-64023232(+)$1	244	9	13	12.0000
eeee	chr9:137029530-137029741(-)$1	211	23	27	12.0000
!bb"	chr17:73559156-73559402(+)$1	246	20	24	12.0000
llld	chr17:7480095-7480361(+)$1	266	101	105	12.0000
DDDD	chr3:57605171-57605397(+)$1	226	213	217	12.0000

#DB
.)))	chr3:45730453-45730670(-)$1	1	166	170	12.0000
((((	chr7:139025410-139025623(+)$1	1	67	71	12.0000
.(((	chr11:75111333-75111543(+)$1	1	1	5	12.0000
))).	chr16:28883213-28883433(+)$1	1	138	142	12.0000
((((	chr11:46783868-46784084(-)$1	1	22	26	12.0000
((((	chr9:35657871-35658107(-)$1	1	113	117	12.0000
....	chr14:20811427-20811645(-)$1	1	120	124	12.0000
.)).	chr16:88788074-88788316(-)$1	1	30	34	12.0000
))))	chr11:10822967-10823189(-)$1	1	142	146	12.0000
((((	chr9:35657817-35658020(-)$1	1	26	30	12.0000
....	chr14:20811361-20811568(-)$1	1	43	47	12.0000
...)	chr15:79152827-79153041(+)$1	1	37	41	12.0000
..))	chr22:22050387-22050635(+)$1	1	104	108	12.0000
....	chr14:20811400-20811612(-)$1	1	87	91	12.0000
((((	chr20:17943479-17943691(-)$1	1	168	172	12.0000
((((	chr9:35657837-35658049(-)$1	1	55	59	12.0000
.)).	chr17:79661996-79662244(+)$1	1	123	127	12.0000
((((	chr17:75085333-75085563(+)$1	1	72	76	12.0000
(((.	chr19:10220821-10221029(+)$1	1	163	167	12.0000
....	chr19:47247406-47247654(-)$1	1	99	103	12.0000
....	chr14:20811412-20811623(-)$1	1	98	102	12.0000
....	chr14:20811378-20811600(-)$1	1	75	79	12.0000
.)))	chr3:45730423-45730653(-)$1	1	149	153	12.0000
.(((	chr14:21860212-21860514(-)$1	1	3	7	12.0000
((((	chr17:75085328-75085532(+)$1	1	77	81	12.0000
....	chr14:20811368-20811578(-)$1	1	53	57	12.0000
))))	chr7:101503687-101503965(+)$1	1	249	253	12.0000
((((	chr16:28883240-28883466(+)$1	1	111	115	12.0000
....	chr2:133014425-133014672(-)$1	1	40	44	12.0000
))))	chr3:47451224-47451479(+)$1	1	90	94	12.0000
....	chr15:45490680-45490945(-)$1	1	247	251	12.0000
((((	chr11:46783901-46784105(-)$1	1	43	47	12.0000
((((	chr11:46783862-46784068(-)$1	1	6	10	12.0000
((((	chr14:20811327-20811534(-)$1	1	9	13	12.0000
...)	chr9:35657833-35658037(-)$1	1	43	47	12.0000
)).)	chr14:20811359-20811561(-)$1	1	36	40	12.0000
....	chr5:135416132-135416339(-)$1	1	45	49	12.0000
))))	chr1:28905188-28905420(-)$1	1	159	163	12.0000
((((	chr9:35657820-35658022(-)$1	1	28	32	12.0000
))((	chr15:45492498-45492754(-)$1	1	52	56	12.0000
.(((	chr14:58706570-58706791(-)$1	1	69	73	12.0000
.)))	chr3:160232646-160232893(-)$1	1	181	185	12.0000
(...	chr6:31802963-31803166(+)$1	1	189	193	12.0000
.(((	chr2:27273540-27273783(+)$1	1	5	9	12.0000
....	chr16:28883206-28883413(+)$1	1	145	149	12.0000
))))	chr12:6619586-6619797(+)$1	1	62	66	12.0000
.(((	chr13:41634763-41635004(-)$1	1	84	88	12.0000
))))	chr1:31440942-31441177(-)$1	1	222	226	12.0000
((((	chr8:67025537-67025807(+)$1	1	106	110	12.0000
....	chr17:74557643-74557862(+)$1	1	24	28	12.0000
...)	chr17:7480028-7480277(+)$1	1	168	172	12.0000
((((	chr19:10220829-10221054(+)$1	1	155	159	12.0000
((..	chr15:79152797-79153015(+)$1	1	67	71	12.0000
))))	chr1:45242062-45242335(+)$1	1	86	90	12.0000
))).	chr16:28883233-28883440(+)$1	1	118	122	12.0000
(...	chr6:31802939-31803163(+)$1	1	213	217	12.0000
(...	chr6:31802966-31803178(+)$1	1	186	190	12.0000
)...	chr8:144624224-144624462(+)$1	1	146	150	12.0000
))))	chr6:26988058-26988281(+)$1	1	21	25	12.0000
))))	chr11:10823025-10823255(-)$1	1	208	212	12.0000
((((	chr6:31802978-31803200(+)$1	1	174	178	12.0000
((((	chr16:1365024-1365299(+)$1	1	3	7	12.0000
((((	chr14:20811347-20811550(-)$1	1	25	29	12.0000
(((.	chr1:161582399-161582687(+)$1	1	193	197	12.0000
(((.	chr1:22149953-22150209(-)$1	1	114	118	12.0000
))))	chr5:180618651-180618866(-)$1	1	192	196	12.0000
((((	chr9:35657849-35658060(-)$1	1	66	70	12.0000
.)).	chrX:135961325-135961534(-)$1	1	155	159	12.0000
((((	chr7:139025352-139025586(+)$1	1	125	129	12.0000
))))	chr11:75111343-75111618(+)$1	1	203	207	12.0000
))).	chr5:140090795-140091039(+)$1	1	156	160	12.0000
....	chr5:109035388-109035595(-)$1	1	151	155	12.0000
((((	chr9:35657801-35658017(-)$1	1	23	27	12.0000
((((	chr9:137029517-137029729(-)$1	1	11	15	12.0000
....	chr5:135416145-135416383(-)$1	1	89	93	12.0000
..).	chr14:90178792-90179074(+)$1	1	153	157	12.0000
((.(	chr5:180618625-180618831(-)$1	1	157	161	12.0000
((((	chr16:71792225-71792452(-)$1	1	174	178	12.0000
(((.	chr11:64022988-64023232(+)$1	1	9	13	12.0000
((((	chr9:137029530-137029741(-)$1	1	23	27	12.0000
.((.	chr17:73559156-73559402(+)$1	1	20	24	12.0000
...)	chr17:7480095-7480361(+)$1	1	101	105	12.0000
))))	chr3:57605171-57605397(+)$1	1	213	217	12.0000

#PSSM
U : 0.86	u : 0.13	
C : 0.86	c : 0.13	
C : 0.86	c : 0.13	
U : 0.86	u : 0.13	

#score	996.0000000000001
#seq	83
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_UTR_m2_run2.nuc.txt

#NT
CGGGGCUGGGGG	chr22:21983337-21983582(-)$1	245	29	41	24.3333
GUGUGCUGGGGG	chr19:46142229-46142544(-)$1	315	80	92	15.8148
GGGGGCAGGGGC	chr22:46508662-46508912(+)$1	250	132	144	17.1111
UGGGGCCCGGGG	chr7:5569502-5569746(-)$1	244	45	57	16.5555
GGGGCCUAGGGG	chr3:9471584-9471839(+)$1	255	5	17	15.5370
CGGGGCGGGGCG	chr9:97848099-97848350(+)$1	251	41	53	17.5740
AGACGCUGGGGG	chr3:49055793-49056057(-)$1	264	88	100	15.0740
CGCGGCUGUGGG	chr19:1407560-1407803(+)$1	243	117	129	16.0925
CGGGAGUGGGGG	chr1:2122202-2122496(-)$1	294	72	84	15.7222
GGGAGCUGGGGG	chr19:2270306-2270559(+)$1	253	207	219	19.7962
CGGGGCUGCCGG	chr11:61582541-61582778(-)$1	237	170	182	16.7407
GGGGGCGGGGGG	chr6:32938679-32938927(+)$1	248	96	108	21.4629
CGGGGCUGCUGG	chr1:182360767-182360997(-)$1	230	51	63	17.0185
UGGGGCUCGGGG	chr17:27717788-27718008(+)$1	220	115	127	19.5185
CUGGGCUGGGUG	chr1:226033768-226034015(-)$1	247	189	201	15.9074
AGGGGCAGGGGA	chr19:49426130-49426383(+)$1	253	83	95	16.6481
AGGGGCUGCGGG	chr11:118965239-118965471(-)$1	232	199	211	19.7037
GGGGGCGGGGGG	chr6:32938575-32938814(+)$1	239	200	212	21.4629
gagggcuggcgg	chr2:97535541-97535806(-)$1	265	86	98	16.1851
uggggcucgggg	chrX:153686577-153686833(+)$1	256	129	141	19.5185
uggagccggggg	chr9:101558651-101558910(-)$1	259	222	234	16.1851
CAGGGCUCGGGG	chr17:27717311-27717662(+)$1	351	94	106	16.3703
CGGGUCUGGGGA	chr1:2123469-2123748(-)$1	279	264	276	16.2777
AGGGGUUUGGGG	chr10:115933787-115934029(-)$1	242	92	104	15.3518
AGGGGUUUGGGG	chr10:115933766-115933985(-)$1	219	48	60	15.3518
AGGGGCUGGUGC	chr22:46509488-46509744(+)$1	256	19	31	16.1851
AGAGGCUGGGGA	chr20:62572717-62572971(-)$1	254	26	38	15.7222
UGGGGCUGGGGG	chr22:46505757-46506000(+)$1	243	96	108	23.4074
AGGGGCUUGGGG	chr9:131910360-131910617(+)$1	257	224	236	19.5185
CGGGGCCGGGCG	chr3:49058533-49058772(-)$1	239	108	120	17.2037
aggggguggggg	chr2:54197781-54198040(-)$1	259	91	103	19.3333
GGGUCCUGGGGG	chr2:242707056-242707337(+)$1	281	15	27	15.5370
UGUGGCUGAGGG	chr17:80211014-80211280(-)$1	266	49	61	15.4444
gggggcggggag	chr9:134269414-134269692(+)$1	278	23	35	17.2037
UCGGGCUGAGGG	chr13:113863071-113863331(+)$1	260	39	51	15.9074
UGGGUUUGGGGG	chr5:134363648-134363982(-)$1	334	90	102	14.8888
CGGGGCUGGUGA	chr19:2270187-2270442(+)$1	255	86	98	17.1111
GGGGGCAGGGGC	chr22:46508745-46508979(+)$1	234	49	61	17.1111
gcgggccggggg	chr16:1821310-1821567(-)$1	257	92	104	17.2037
CGGUGCUGGGGG	chr16:2139071-2139371(-)$1	300	256	268	20.1666
CCGGGCUGAGGG	chr17:56405561-56405937(-)$1	376	31	43	16.8333
CCGGGCUGAGGG	chr17:56405888-56406161(-)$1	273	255	267	16.8333
GGGGGCUGGUGA	chr5:154135214-154135449(+)$1	235	167	179	16.8333
CGAGGCUGGUGG	chr3:49057691-49058004(-)$1	313	79	91	16.7407
gggggcggggag	chr3:20081610-20081841(+)$1	231	214	226	17.2037
gggggcuggcgc	chr2:95825162-95825431(-)$1	269	0	12	16.4629
gggggcgguggg	chr8:102217336-102217599(-)$1	263	5	17	17.5740
aggggcugaggg	chr6:86352571-86352821(-)$1	250	39	51	19.8888
cggggcgggggg	chr1:27022508-27022754(+)$1	246	219	231	21.7407
cggggcggggcg	chr13:113863745-113864018(+)$1	273	78	90	17.5740
GGGGGCGGGGGG	chr6:32938751-32939002(+)$1	251	24	36	21.4629
cggggccggggg	chr9:139560096-139560344(+)$1	248	79	91	21.3703
UGGGGGUGGAGG	chr19:46142162-46142429(-)$1	267	219	231	15.2592

#otherMatches

#Struct PSSM
ddmmmmdddd22	chr3:49057855-49058094(-)$1	239	169	181	16.7407
fddddggggggg	chr22:21983337-21983582(-)$1	245	29	41	24.3333
f]bb]ggggggg	chr19:46142229-46142544(-)$1	315	80	92	15.8148
ddddddd[eeee	chr22:46508662-46508912(+)$1	250	132	144	17.1111
{BB{HHHHHHHH	chr7:5569502-5569746(-)$1	244	45	57	16.5555
GGGGKKFFFFFF	chr3:9471584-9471839(+)$1	255	5	17	15.5370
BKKDDDD{BB{E	chr9:97848099-97848350(+)$1	251	41	53	17.5740
ee::::::ffff	chr3:49055793-49056057(-)$1	264	88	100	15.0740
dddmmmmddddf	chr19:1407560-1407803(+)$1	243	117	129	16.0925
ff"""ccc!!dd	chr1:2122202-2122496(-)$1	294	72	84	15.7222
ff!!a[a[ffff	chr19:2270306-2270559(+)$1	253	207	219	19.7962
dddnnnnndddd	chr11:61582541-61582778(-)$1	237	170	182	16.7407
hhhhhhhh]bbb	chr6:32938679-32938927(+)$1	248	96	108	21.4629
gggggggccccc	chr1:182360767-182360997(-)$1	230	51	63	17.0185
]dddd333eeee	chr17:27717788-27718008(+)$1	220	115	127	19.5185
44iiiiiiiiid	chr1:226033768-226034015(-)$1	247	189	201	15.9074
hhhhh!!eeeee	chr19:49426130-49426383(+)$1	253	83	95	16.6481
ddd[gggggggn	chr11:118965239-118965471(-)$1	232	199	211	19.7037
JJJJJJJJHHHH	chr6:32938575-32938814(+)$1	239	200	212	21.4629
$$$$ccc[ccco	chr2:97535541-97535806(-)$1	265	86	98	16.1851
oobb]dddd333	chrX:153686577-153686833(+)$1	256	129	141	19.5185
ffff========	chr9:101558651-101558910(-)$1	259	222	234	16.1851
GGDDDD{EEEEE	chr17:27717311-27717662(+)$1	351	94	106	16.3703
ddDDDDYYFFFF	chr1:2123469-2123748(-)$1	279	264	276	16.2777
gggggg!!gggg	chr10:115933787-115934029(-)$1	242	92	104	15.3518
gggggg!!gggg	chr10:115933766-115933985(-)$1	219	48	60	15.3518
!!bb[bb[ffff	chr22:46509488-46509744(+)$1	256	19	31	16.1851
GGGCCCEEEEE{	chr20:62572717-62572971(-)$1	254	26	38	15.7222
[ffffff"""ff	chr22:46505757-46506000(+)$1	243	96	108	23.4074
ZFFFFFF}EEEE	chr9:131910360-131910617(+)$1	257	224	236	19.5185
e"""gggggggr	chr3:49058533-49058772(-)$1	239	108	120	17.2037
BBLLLBBKKCCC	chr2:54197781-54198040(-)$1	259	91	103	19.3333
JJJJJJJ{BBDD	chr2:242707056-242707337(+)$1	281	15	27	15.5370
[ggggggg!!aq	chr17:80211014-80211280(-)$1	266	49	61	15.4444
E{CCCcccmmmm	chr9:134269414-134269692(+)$1	278	23	35	17.2037
]ggggggg::::	chr13:113863071-113863331(+)$1	260	39	51	15.9074
33ffffff]ddd	chr5:134363648-134363982(-)$1	334	90	102	14.8888
HHHHCCCddddo	chr19:2270187-2270442(+)$1	255	86	98	17.1111
ddddddd[eeee	chr22:46508745-46508979(+)$1	234	49	61	17.1111
ffffff[=====	chr16:1821310-1821567(-)$1	257	92	104	17.2037
fff]ccc]aeee	chr16:2139071-2139371(-)$1	300	256	268	20.1666
ooeeeee]iiii	chr17:56405561-56405937(-)$1	376	31	43	16.8333
DDCCC}CCC}GG	chr17:56405888-56406161(-)$1	273	255	267	16.8333
bb[ccc[cccrr	chr5:154135214-154135449(+)$1	235	167	179	16.8333
]eeeeeccclll	chr3:49057691-49058004(-)$1	313	79	91	16.7407
ee]eeeee:::A	chr3:20081610-20081841(+)$1	231	214	226	17.2037
:IIIIIIIIIFF	chr2:95825162-95825431(-)$1	269	0	12	16.4629
FFFFhhhhhhhh	chr8:102217336-102217599(-)$1	263	5	17	17.5740
cc::ccc!!aqq	chr6:86352571-86352821(-)$1	250	39	51	19.8888
eee=========	chr1:27022508-27022754(+)$1	246	219	231	21.7407
b]cccBBDDDD:	chr13:113863745-113864018(+)$1	273	78	90	17.5740
BBggggggg!!b	chr6:32938751-32939002(+)$1	251	24	36	21.4629
hhhhh333eeee	chr9:139560096-139560344(+)$1	248	79	91	21.3703
fffff:HHHHHH	chr19:46142162-46142429(-)$1	267	219	231	15.2592

#DB
((....))))..	chr3:49057855-49058094(-)$1	1	169	181	16.7407
)))))(((((((	chr22:21983337-21983582(-)$1	1	29	41	24.3333
).)).)))))))	chr19:46142229-46142544(-)$1	1	80	92	15.8148
(((((((.((((	chr22:46508662-46508912(+)$1	1	132	144	17.1111
.((.((((((((	chr7:5569502-5569746(-)$1	1	45	57	16.5555
((((..((((((	chr3:9471584-9471839(+)$1	1	5	17	15.5370
(..((((.((.(	chr9:97848099-97848350(+)$1	1	41	53	17.5740
))......((((	chr3:49055793-49056057(-)$1	1	88	100	15.0740
(((....))))(	chr19:1407560-1407803(+)$1	1	117	129	16.0925
((...(((..((	chr1:2122202-2122496(-)$1	1	72	84	15.7222
((..(.(.((((	chr19:2270306-2270559(+)$1	1	207	219	19.7962
(((.....))))	chr11:61582541-61582778(-)$1	1	170	182	16.7407
)))))))).))(	chr6:32938679-32938927(+)$1	1	96	108	21.4629
)))))))(((((	chr1:182360767-182360997(-)$1	1	51	63	17.0185
.))))...))))	chr17:27717788-27718008(+)$1	1	115	127	19.5185
..)))))))))(	chr1:226033768-226034015(-)$1	1	189	201	15.9074
(((((..(((((	chr19:49426130-49426383(+)$1	1	83	95	16.6481
(((.(((((((.	chr11:118965239-118965471(-)$1	1	199	211	19.7037
))))))))))))	chr6:32938575-32938814(+)$1	1	200	212	21.4629
....(((.(((.	chr2:97535541-97535806(-)$1	1	86	98	16.1851
..)).))))...	chrX:153686577-153686833(+)$1	1	129	141	19.5185
))))))))))))	chr9:101558651-101558910(-)$1	1	222	234	16.1851
((((((.(((((	chr17:27717311-27717662(+)$1	1	94	106	16.3703
))))))..))))	chr1:2123469-2123748(-)$1	1	264	276	16.2777
((((((..((((	chr10:115933787-115934029(-)$1	1	92	104	15.3518
((((((..((((	chr10:115933766-115933985(-)$1	1	48	60	15.3518
..((.((.((((	chr22:46509488-46509744(+)$1	1	19	31	16.1851
(((((((((((.	chr20:62572717-62572971(-)$1	1	26	38	15.7222
.((((((...((	chr22:46505757-46506000(+)$1	1	96	108	23.4074
.)))))).))))	chr9:131910360-131910617(+)$1	1	224	236	19.5185
(...(((((((.	chr3:49058533-49058772(-)$1	1	108	120	17.2037
((...((..(((	chr2:54197781-54198040(-)$1	1	91	103	19.3333
(((((((.((((	chr2:242707056-242707337(+)$1	1	15	27	15.5370
.(((((((..(.	chr17:80211014-80211280(-)$1	1	49	61	15.4444
(.((((((....	chr9:134269414-134269692(+)$1	1	23	35	17.2037
.)))))))....	chr13:113863071-113863331(+)$1	1	39	51	15.9074
..)))))).)))	chr5:134363648-134363982(-)$1	1	90	102	14.8888
(((((((((((.	chr19:2270187-2270442(+)$1	1	86	98	17.1111
(((((((.((((	chr22:46508745-46508979(+)$1	1	49	61	17.1111
((((((.(((((	chr16:1821310-1821567(-)$1	1	92	104	17.2037
))).))).))))	chr16:2139071-2139371(-)$1	1	256	268	20.1666
..))))).))))	chr17:56405561-56405937(-)$1	1	31	43	16.8333
))))).))).))	chr17:56405888-56406161(-)$1	1	255	267	16.8333
((.(((.(((..	chr5:154135214-154135449(+)$1	1	167	179	16.8333
.)))))(((...	chr3:49057691-49058004(-)$1	1	79	91	16.7407
)).)))))...)	chr3:20081610-20081841(+)$1	1	214	226	17.2037
.(((((((((((	chr2:95825162-95825431(-)$1	1	0	12	16.4629
((((((((((((	chr8:102217336-102217599(-)$1	1	5	17	17.5740
))..(((..(..	chr6:86352571-86352821(-)$1	1	39	51	19.8888
))))))))))))	chr1:27022508-27022754(+)$1	1	219	231	21.7407
).)))((((((.	chr13:113863745-113864018(+)$1	1	78	90	17.5740
(((((((((..(	chr6:32938751-32939002(+)$1	1	24	36	21.4629
)))))...))))	chr9:139560096-139560344(+)$1	1	79	91	21.3703
))))).))))))	chr19:46142162-46142429(-)$1	1	219	231	15.2592

#PSSM
C : 0.29	G : 0.18	A : 0.14	U : 0.12	g : 0.11	c : 0.05	u : 0.03	a : 0.03	
G : 0.64	g : 0.20	C : 0.05	U : 0.03	a : 0.01	A : 0.01	c : 0.01	
G : 0.64	g : 0.24	A : 0.07	C : 0.01	U : 0.01	
G : 0.66	g : 0.22	U : 0.05	C : 0.01	A : 0.01	a : 0.01	
G : 0.66	g : 0.24	C : 0.03	U : 0.03	A : 0.01	
C : 0.66	c : 0.22	U : 0.05	G : 0.03	g : 0.01	
U : 0.59	u : 0.09	g : 0.09	G : 0.07	A : 0.05	c : 0.05	C : 0.03	
G : 0.62	g : 0.22	C : 0.05	U : 0.05	A : 0.01	c : 0.01	
G : 0.61	g : 0.20	A : 0.07	C : 0.05	U : 0.01	u : 0.01	a : 0.01	
G : 0.61	g : 0.20	U : 0.11	c : 0.03	C : 0.01	A : 0.01	
G : 0.70	g : 0.18	C : 0.03	a : 0.03	U : 0.01	c : 0.01	
G : 0.61	g : 0.22	A : 0.09	C : 0.05	c : 0.01	

#score	951.7777777777774
#seq	54
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_CDS_m1_run2.nuc.txt

#NT
UGG	chr19:5691254-5691520(+)$1	266	125	128	8.9999
UGG	chr19:49118530-49118761(-)$1	231	9	12	8.9999
UGG	chr8:144663294-144663535(-)$1	241	2	5	8.9999
UGG	chr5:149825085-149825320(-)$1	235	0	3	8.9999
UGG	chr6:43022073-43022319(-)$1	246	99	102	8.9999
UGG	chr5:81573499-81573749(-)$1	250	22	25	8.9999
UGG	chr11:61557962-61558175(-)$1	213	61	64	8.9999
UGG	chr3:101399947-101400161(-)$1	214	31	34	8.9999
UGG	chr5:149826336-149826566(-)$1	230	2	5	8.9999
UGG	chr1:24021121-24021326(+)$1	205	69	72	8.9999
UGG	chr19:38795927-38796179(-)$1	252	5	8	8.9999
UGG	chr16:30081214-30081431(+)$1	217	22	25	8.9999
UGG	chr11:812470-812679(+)$1	209	7	10	8.9999
UGG	chr12:112451294-112451513(+)$1	219	30	33	8.9999
UGG	chr11:5269504-5269748(-)$1	244	35	38	8.9999
UGG	chr4:122738704-122738942(-)$1	238	107	110	8.9999
UGG	chr19:50002668-50002877(+)$1	209	22	25	8.9999
UGG	chr5:180664997-180665296(-)$1	299	14	17	8.9999
UGG	chr22:19163507-19163809(-)$1	302	78	81	8.9999
UGG	chr10:105151915-105152140(-)$1	225	59	62	8.9999
UGG	chr17:48445318-48445568(-)$1	250	9	12	8.9999
UGG	chr3:48638066-48638316(-)$1	250	14	17	8.9999
UGG	chr11:5274415-5274631(-)$1	216	0	3	8.9999
UGG	chr19:39926242-39926448(-)$1	206	11	14	8.9999
UGG	chr6:170844166-170844489(-)$1	323	21	24	8.9999
UGG	chr16:18800306-18800521(-)$1	215	18	21	8.9999
UGG	chr19:49118490-49118724(-)$1	234	99	102	8.9999
UGG	chr16:89627628-89627848(+)$1	220	134	137	8.9999
UGG	chr2:217364648-217364855(+)$1	207	7	10	8.9999
UGG	chr11:5289693-5289906(-)$1	213	83	86	8.9999
UGG	chr16:88875827-88876095(-)$1	268	21	24	8.9999
UGG	chr6:33240304-33240523(+)$1	219	159	162	8.9999
UGG	chr8:146015234-146015447(-)$1	213	16	19	8.9999
UGG	chr4:83740155-83740419(-)$1	264	33	36	8.9999
UGG	chr19:5903608-5903873(-)$1	265	117	120	8.9999
UGG	chr20:32873145-32873367(-)$1	222	6	9	8.9999
UGG	chrX:153195391-153195687(-)$1	296	2	5	8.9999
UGG	chr19:13065036-13065289(-)$1	253	1	4	8.9999
UGG	chr19:48248709-48248964(+)$1	255	2	5	8.9999
UGG	chr19:49379013-49379285(+)$1	272	37	40	8.9999
UGG	chr17:37008818-37009028(-)$1	210	1	4	8.9999
UGG	chr17:4848150-4848393(+)$1	243	39	42	8.9999
UGG	chr11:67800523-67800830(+)$1	307	8	11	8.9999
UGG	chr20:57605265-57605476(-)$1	211	76	79	8.9999
UGG	chr20:57605276-57605485(-)$1	209	85	88	8.9999
ugg	chr9:100777608-100777819(+)$1	211	50	53	8.9999
UGG	chr12:54063554-54063792(-)$1	238	103	106	8.9999
UGG	chr8:146015639-146015847(-)$1	208	2	5	8.9999
UGG	chr9:127624088-127624327(-)$1	239	36	39	8.9999
UGG	chr16:88874566-88874822(+)$1	256	3	6	8.9999
UGG	chr17:80445822-80446083(+)$1	261	38	41	8.9999
UGG	chr19:51848343-51848605(-)$1	262	5	8	8.9999
UGG	chr11:314990-315240(+)$1	250	6	9	8.9999
UGG	chr17:7128248-7128579(+)$1	331	52	55	8.9999
UGG	chr16:2826897-2827145(-)$1	248	153	156	8.9999
UGG	chr5:149826271-149826479(-)$1	208	30	33	8.9999
UGG	chr7:32528799-32529043(-)$1	244	58	61	8.9999
UGG	chr3:48481718-48481967(+)$1	249	45	48	8.9999
UGG	chr9:127622432-127622643(-)$1	211	2	5	8.9999
UGG	chr9:100845144-100845439(+)$1	295	38	41	8.9999
UGG	chr16:2014263-2014466(-)$1	203	49	52	8.9999
ugg	chr17:80445691-80445902(+)$1	211	10	13	8.9999
UGG	chrX:118925438-118925669(-)$1	231	102	105	8.9999
UGG	chr4:666167-666400(-)$1	233	19	22	8.9999
UGG	chr11:5290928-5291130(-)$1	202	3	6	8.9999
UGG	chrX:47088073-47088311(+)$1	238	74	77	8.9999
UGG	chr12:53691728-53691942(+)$1	214	50	53	8.9999
UGG	chr11:5290967-5291208(-)$1	241	81	84	8.9999
UGG	chr14:50052902-50053105(-)$1	203	42	45	8.9999
UGG	chr19:39923783-39924017(-)$1	234	22	25	8.9999
UGG	chr12:53689296-53689523(+)$1	227	56	59	8.9999
UGG	chr16:88718890-88719108(-)$1	218	37	40	8.9999
UGG	chr11:812528-812733(+)$1	205	10	13	8.9999
UGG	chr3:52028957-52029180(-)$1	223	2	5	8.9999
UGG	chr1:45242322-45242543(+)$1	221	26	29	8.9999
UGG	chr3:197680854-197681078(+)$1	224	34	37	8.9999
UGG	chr16:418227-418444(-)$1	217	60	63	8.9999
UGG	chr7:99751476-99751735(+)$1	259	13	16	8.9999
UGG	chr6:75950802-75951023(-)$1	221	56	59	8.9999
UGG	chr6:43193966-43194199(-)$1	233	18	21	8.9999
UGG	chr19:18642904-18643134(-)$1	230	78	81	8.9999
UGG	chr11:64011385-64011640(+)$1	255	14	17	8.9999
UGG	chr19:50000350-50000566(+)$1	216	7	10	8.9999
UGG	chr19:51322457-51322711(-)$1	254	3	6	8.9999
UGG	chr7:128502958-128503199(+)$1	241	1	4	8.9999
UGG	chrX:153628703-153628931(+)$1	228	14	17	8.9999
UGG	chr7:65425731-65426004(-)$1	273	43	46	8.9999
UGG	chr19:38742862-38743076(-)$1	214	11	14	8.9999
UGG	chr19:42364774-42365010(+)$1	236	3	6	8.9999
UGG	chr11:812524-812728(+)$1	204	14	17	8.9999
UGG	chrX:153760174-153760406(-)$1	232	16	19	8.9999
UGG	chr6:33240344-33240576(+)$1	232	119	122	8.9999
UGG	chr8:56986841-56987086(-)$1	245	60	63	8.9999
UGG	chr8:145135045-145135320(+)$1	275	50	53	8.9999
UGG	chr6:31604806-31605013(+)$1	207	22	25	8.9999
UGG	chr11:812672-812875(+)$1	203	18	21	8.9999
UGG	chr15:83206988-83207224(-)$1	236	29	32	8.9999
UGG	chr11:5289706-5289911(-)$1	205	88	91	8.9999

#otherMatches

#Struct PSSM
fff	chr5:68472964-68473195(+)$1	231	165	168	8.9999
nne	chr19:5691254-5691520(+)$1	266	125	128	8.9999
:ee	chr19:49118530-49118761(-)$1	231	9	12	8.9999
:dd	chr8:144663294-144663535(-)$1	241	2	5	8.9999
DDD	chr5:149825085-149825320(-)$1	235	0	3	8.9999
ees	chr6:43022073-43022319(-)$1	246	99	102	8.9999
DDD	chr5:81573499-81573749(-)$1	250	22	25	8.9999
ddd	chr11:61557962-61558175(-)$1	213	61	64	8.9999
bb2	chr3:101399947-101400161(-)$1	214	31	34	8.9999
:a[	chr5:149826336-149826566(-)$1	230	2	5	8.9999
fff	chr1:24021121-24021326(+)$1	205	69	72	8.9999
:EE	chr19:38795927-38796179(-)$1	252	5	8	8.9999
DDL	chr16:30081214-30081431(+)$1	217	22	25	8.9999
mdd	chr11:812470-812679(+)$1	209	7	10	8.9999
HHH	chr12:112451294-112451513(+)$1	219	30	33	8.9999
!cc	chr11:5269504-5269748(-)$1	244	35	38	8.9999
===	chr4:122738704-122738942(-)$1	238	107	110	8.9999
c[c	chr19:50002668-50002877(+)$1	209	22	25	8.9999
eee	chr5:180664997-180665296(-)$1	299	14	17	8.9999
III	chr22:19163507-19163809(-)$1	302	78	81	8.9999
ccf	chr10:105151915-105152140(-)$1	225	59	62	8.9999
JJ:	chr17:48445318-48445568(-)$1	250	9	12	8.9999
CMM	chr3:48638066-48638316(-)$1	250	14	17	8.9999
:::	chr11:5274415-5274631(-)$1	216	0	3	8.9999
ddd	chr19:39926242-39926448(-)$1	206	11	14	8.9999
sss	chr6:170844166-170844489(-)$1	323	21	24	8.9999
ccc	chr16:18800306-18800521(-)$1	215	18	21	8.9999
MMM	chr19:49118490-49118724(-)$1	234	99	102	8.9999
eee	chr16:89627628-89627848(+)$1	220	134	137	8.9999
:FF	chr2:217364648-217364855(+)$1	207	7	10	8.9999
EEE	chr11:5289693-5289906(-)$1	213	83	86	8.9999
===	chr16:88875827-88876095(-)$1	268	21	24	8.9999
::c	chr6:33240304-33240523(+)$1	219	159	162	8.9999
CCC	chr8:146015234-146015447(-)$1	213	16	19	8.9999
hhh	chr4:83740155-83740419(-)$1	264	33	36	8.9999
hhh	chr19:5903608-5903873(-)$1	265	117	120	8.9999
ddd	chr20:32873145-32873367(-)$1	222	6	9	8.9999
B{D	chrX:153195391-153195687(-)$1	296	2	5	8.9999
DDD	chr19:13065036-13065289(-)$1	253	1	4	8.9999
::F	chr19:48248709-48248964(+)$1	255	2	5	8.9999
iii	chr19:49379013-49379285(+)$1	272	37	40	8.9999
ddd	chr17:37008818-37009028(-)$1	210	1	4	8.9999
pgg	chr17:4848150-4848393(+)$1	243	39	42	8.9999
ggg	chr11:67800523-67800830(+)$1	307	8	11	8.9999
e[b	chr20:57605265-57605476(-)$1	211	76	79	8.9999
e[b	chr20:57605276-57605485(-)$1	209	85	88	8.9999
eee	chr9:100777608-100777819(+)$1	211	50	53	8.9999
ee"	chr12:54063554-54063792(-)$1	238	103	106	8.9999
CCK	chr8:146015639-146015847(-)$1	208	2	5	8.9999
ppe	chr9:127624088-127624327(-)$1	239	36	39	8.9999
:cc	chr16:88874566-88874822(+)$1	256	3	6	8.9999
dd"	chr17:80445822-80446083(+)$1	261	38	41	8.9999
FFF	chr19:51848343-51848605(-)$1	262	5	8	8.9999
FFF	chr11:314990-315240(+)$1	250	6	9	8.9999
ooo	chr17:7128248-7128579(+)$1	331	52	55	8.9999
c]a	chr16:2826897-2827145(-)$1	248	153	156	8.9999
[a[	chr5:149826271-149826479(-)$1	208	30	33	8.9999
[dd	chr7:32528799-32529043(-)$1	244	58	61	8.9999
cmm	chr3:48481718-48481967(+)$1	249	45	48	8.9999
===	chr9:127622432-127622643(-)$1	211	2	5	8.9999
eee	chr9:100845144-100845439(+)$1	295	38	41	8.9999
EEE	chr16:2014263-2014466(-)$1	203	49	52	8.9999
ggg	chr17:80445691-80445902(+)$1	211	10	13	8.9999
eee	chrX:118925438-118925669(-)$1	231	102	105	8.9999
GGG	chr4:666167-666400(-)$1	233	19	22	8.9999
DCC	chr11:5290928-5291130(-)$1	202	3	6	8.9999
fff	chrX:47088073-47088311(+)$1	238	74	77	8.9999
qqb	chr12:53691728-53691942(+)$1	214	50	53	8.9999
EEE	chr11:5290967-5291208(-)$1	241	81	84	8.9999
ooa	chr14:50052902-50053105(-)$1	203	42	45	8.9999
HHH	chr19:39923783-39924017(-)$1	234	22	25	8.9999
CCC	chr12:53689296-53689523(+)$1	227	56	59	8.9999
===	chr16:88718890-88719108(-)$1	218	37	40	8.9999
eee	chr11:812528-812733(+)$1	205	10	13	8.9999
:::	chr3:52028957-52029180(-)$1	223	2	5	8.9999
ddd	chr1:45242322-45242543(+)$1	221	26	29	8.9999
ddd	chr3:197680854-197681078(+)$1	224	34	37	8.9999
ccc	chr16:418227-418444(-)$1	217	60	63	8.9999
ooo	chr7:99751476-99751735(+)$1	259	13	16	8.9999
vvv	chr6:75950802-75951023(-)$1	221	56	59	8.9999
FFF	chr6:43193966-43194199(-)$1	233	18	21	8.9999
lcc	chr19:18642904-18643134(-)$1	230	78	81	8.9999
CCC	chr11:64011385-64011640(+)$1	255	14	17	8.9999
FFF	chr19:50000350-50000566(+)$1	216	7	10	8.9999
EE:	chr19:51322457-51322711(-)$1	254	3	6	8.9999
::d	chr7:128502958-128503199(+)$1	241	1	4	8.9999
ppp	chrX:153628703-153628931(+)$1	228	14	17	8.9999
SSS	chr7:65425731-65426004(-)$1	273	43	46	8.9999
GGG	chr19:38742862-38743076(-)$1	214	11	14	8.9999
b[c	chr19:42364774-42365010(+)$1	236	3	6	8.9999
eee	chr11:812524-812728(+)$1	204	14	17	8.9999
HHH	chrX:153760174-153760406(-)$1	232	16	19	8.9999
eee	chr6:33240344-33240576(+)$1	232	119	122	8.9999
hhh	chr8:56986841-56987086(-)$1	245	60	63	8.9999
CCC	chr8:145135045-145135320(+)$1	275	50	53	8.9999
fff	chr6:31604806-31605013(+)$1	207	22	25	8.9999
{EE	chr11:812672-812875(+)$1	203	18	21	8.9999
eee	chr15:83206988-83207224(-)$1	236	29	32	8.9999
EEE	chr11:5289706-5289911(-)$1	205	88	91	8.9999

#DB
(((	chr5:68472964-68473195(+)$1	1	165	168	8.9999
..)	chr19:5691254-5691520(+)$1	1	125	128	8.9999
.((	chr19:49118530-49118761(-)$1	1	9	12	8.9999
.((	chr8:144663294-144663535(-)$1	1	2	5	8.9999
(((	chr5:149825085-149825320(-)$1	1	0	3	8.9999
((.	chr6:43022073-43022319(-)$1	1	99	102	8.9999
(((	chr5:81573499-81573749(-)$1	1	22	25	8.9999
(((	chr11:61557962-61558175(-)$1	1	61	64	8.9999
)).	chr3:101399947-101400161(-)$1	1	31	34	8.9999
.(.	chr5:149826336-149826566(-)$1	1	2	5	8.9999
(((	chr1:24021121-24021326(+)$1	1	69	72	8.9999
.((	chr19:38795927-38796179(-)$1	1	5	8	8.9999
((.	chr16:30081214-30081431(+)$1	1	22	25	8.9999
.))	chr11:812470-812679(+)$1	1	7	10	8.9999
(((	chr12:112451294-112451513(+)$1	1	30	33	8.9999
.((	chr11:5269504-5269748(-)$1	1	35	38	8.9999
(((	chr4:122738704-122738942(-)$1	1	107	110	8.9999
(.(	chr19:50002668-50002877(+)$1	1	22	25	8.9999
(((	chr5:180664997-180665296(-)$1	1	14	17	8.9999
(((	chr22:19163507-19163809(-)$1	1	78	81	8.9999
))(	chr10:105151915-105152140(-)$1	1	59	62	8.9999
((.	chr17:48445318-48445568(-)$1	1	9	12	8.9999
(..	chr3:48638066-48638316(-)$1	1	14	17	8.9999
...	chr11:5274415-5274631(-)$1	1	0	3	8.9999
)))	chr19:39926242-39926448(-)$1	1	11	14	8.9999
...	chr6:170844166-170844489(-)$1	1	21	24	8.9999
)))	chr16:18800306-18800521(-)$1	1	18	21	8.9999
...	chr19:49118490-49118724(-)$1	1	99	102	8.9999
(((	chr16:89627628-89627848(+)$1	1	134	137	8.9999
.((	chr2:217364648-217364855(+)$1	1	7	10	8.9999
(((	chr11:5289693-5289906(-)$1	1	83	86	8.9999
(((	chr16:88875827-88876095(-)$1	1	21	24	8.9999
..(	chr6:33240304-33240523(+)$1	1	159	162	8.9999
(((	chr8:146015234-146015447(-)$1	1	16	19	8.9999
(((	chr4:83740155-83740419(-)$1	1	33	36	8.9999
)))	chr19:5903608-5903873(-)$1	1	117	120	8.9999
(((	chr20:32873145-32873367(-)$1	1	6	9	8.9999
(.(	chrX:153195391-153195687(-)$1	1	2	5	8.9999
(((	chr19:13065036-13065289(-)$1	1	1	4	8.9999
..(	chr19:48248709-48248964(+)$1	1	2	5	8.9999
)))	chr19:49379013-49379285(+)$1	1	37	40	8.9999
(((	chr17:37008818-37009028(-)$1	1	1	4	8.9999
.))	chr17:4848150-4848393(+)$1	1	39	42	8.9999
(((	chr11:67800523-67800830(+)$1	1	8	11	8.9999
(.(	chr20:57605265-57605476(-)$1	1	76	79	8.9999
(.(	chr20:57605276-57605485(-)$1	1	85	88	8.9999
)))	chr9:100777608-100777819(+)$1	1	50	53	8.9999
((.	chr12:54063554-54063792(-)$1	1	103	106	8.9999
((.	chr8:146015639-146015847(-)$1	1	2	5	8.9999
..)	chr9:127624088-127624327(-)$1	1	36	39	8.9999
.((	chr16:88874566-88874822(+)$1	1	3	6	8.9999
((.	chr17:80445822-80446083(+)$1	1	38	41	8.9999
(((	chr19:51848343-51848605(-)$1	1	5	8	8.9999
(((	chr11:314990-315240(+)$1	1	6	9	8.9999
...	chr17:7128248-7128579(+)$1	1	52	55	8.9999
).)	chr16:2826897-2827145(-)$1	1	153	156	8.9999
.(.	chr5:149826271-149826479(-)$1	1	30	33	8.9999
.((	chr7:32528799-32529043(-)$1	1	58	61	8.9999
(..	chr3:48481718-48481967(+)$1	1	45	48	8.9999
(((	chr9:127622432-127622643(-)$1	1	2	5	8.9999
)))	chr9:100845144-100845439(+)$1	1	38	41	8.9999
(((	chr16:2014263-2014466(-)$1	1	49	52	8.9999
(((	chr17:80445691-80445902(+)$1	1	10	13	8.9999
)))	chrX:118925438-118925669(-)$1	1	102	105	8.9999
(((	chr4:666167-666400(-)$1	1	19	22	8.9999
(((	chr11:5290928-5291130(-)$1	1	3	6	8.9999
)))	chrX:47088073-47088311(+)$1	1	74	77	8.9999
..)	chr12:53691728-53691942(+)$1	1	50	53	8.9999
)))	chr11:5290967-5291208(-)$1	1	81	84	8.9999
..)	chr14:50052902-50053105(-)$1	1	42	45	8.9999
(((	chr19:39923783-39924017(-)$1	1	22	25	8.9999
(((	chr12:53689296-53689523(+)$1	1	56	59	8.9999
)))	chr16:88718890-88719108(-)$1	1	37	40	8.9999
(((	chr11:812528-812733(+)$1	1	10	13	8.9999
...	chr3:52028957-52029180(-)$1	1	2	5	8.9999
(((	chr1:45242322-45242543(+)$1	1	26	29	8.9999
)))	chr3:197680854-197681078(+)$1	1	34	37	8.9999
)))	chr16:418227-418444(-)$1	1	60	63	8.9999
...	chr7:99751476-99751735(+)$1	1	13	16	8.9999
...	chr6:75950802-75951023(-)$1	1	56	59	8.9999
(((	chr6:43193966-43194199(-)$1	1	18	21	8.9999
.))	chr19:18642904-18643134(-)$1	1	78	81	8.9999
(((	chr11:64011385-64011640(+)$1	1	14	17	8.9999
(((	chr19:50000350-50000566(+)$1	1	7	10	8.9999
((.	chr19:51322457-51322711(-)$1	1	3	6	8.9999
..(	chr7:128502958-128503199(+)$1	1	1	4	8.9999
...	chrX:153628703-153628931(+)$1	1	14	17	8.9999
...	chr7:65425731-65426004(-)$1	1	43	46	8.9999
(((	chr19:38742862-38743076(-)$1	1	11	14	8.9999
(.(	chr19:42364774-42365010(+)$1	1	3	6	8.9999
(((	chr11:812524-812728(+)$1	1	14	17	8.9999
(((	chrX:153760174-153760406(-)$1	1	16	19	8.9999
(((	chr6:33240344-33240576(+)$1	1	119	122	8.9999
)))	chr8:56986841-56987086(-)$1	1	60	63	8.9999
(((	chr8:145135045-145135320(+)$1	1	50	53	8.9999
(((	chr6:31604806-31605013(+)$1	1	22	25	8.9999
.((	chr11:812672-812875(+)$1	1	18	21	8.9999
)))	chr15:83206988-83207224(-)$1	1	29	32	8.9999
(((	chr11:5289706-5289911(-)$1	1	88	91	8.9999

#PSSM
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_UTR_m3_run1.nuc.txt

#NT
ggguggggauggguggg	chr5:53180024-53180291(-)$1	267	67	84	21.8333
gggugggggcgggaccg	chr4:2935990-2936301(-)$1	311	99	116	20.6874
agcuggaggagggcagg	chr6:86352570-86352817(-)$1	247	21	38	19.3333
GGAGGGGGGAGGGCAGG	chr16:30535380-30535645(-)$1	265	101	118	22.7708
GGGUGGGGGCGGGUAGG	chr12:109124510-109124804(-)$1	294	77	94	25.3749
GAGGGGUAGAGGGCUGG	chr8:103424365-103424615(-)$1	250	78	95	13.9166
ggcgggcggaaggcagg	chr2:183902916-183903198(-)$1	282	130	147	16.8333
AAGGGGGGUUGGGUUGG	chr14:70238226-70238465(+)$1	239	70	87	14.1249
GGUGGGAGGAGUGGCGG	chr8:101964436-101964710(-)$1	274	215	232	17.2499
GGAGGAGGGCGGGGAAG	chr7:77166501-77166742(+)$1	241	61	78	15.8958
AUUGGGAGGAGGGUGGG	chr8:41787600-41787856(-)$1	256	104	121	15.8958
gggugggggaguggagg	chr2:191513668-191513927(+)$1	259	27	44	21.8333
AGUUGGAGCCGGGGUCG	chr2:28974727-28975030(+)$1	303	139	156	12.8750
CGCCGGAGUCGGGAGGG	chr20:57467335-57467628(+)$1	293	271	288	14.0208
ggguggggguggguggc	chr3:185542677-185542941(-)$1	264	59	76	20.6874
AAGGGGGGUUGGGUUGG	chr14:70238180-70238426(+)$1	246	116	133	14.1249
gcugggucgagggcggg	chr9:139560093-139560362(+)$1	269	229	246	13.3958
gggugggggugcgaggu	chr19:7978203-7978516(+)$1	313	210	227	16.4166
gugagggggcgcggcgg	chr8:25315656-25315901(-)$1	245	198	215	16.3124
GGCGGGAGACGGGCGGG	chr19:1104619-1104865(+)$1	246	96	113	19.8541
GGGCGAAGGCGGGCUCG	chr7:5569450-5569692(-)$1	242	20	37	14.4375
GGUUGGGGGCGCGGAGG	chr19:1104347-1104709(+)$1	362	203	220	20.7916
aggcggcggaggcggcg	chr6:34664409-34664669(-)$1	260	66	83	12.5625
GGGUGGGGGCGGCUUGG	chr12:109124332-109124592(-)$1	260	50	67	20.3749
gggugggagggaggagg	chr3:100428662-100428949(+)$1	287	40	57	16.2083
GGCUGGGGCCGGGUCGG	chr14:23791032-23791285(+)$1	253	112	129	19.8541
gcgggguggcgggcggg	chr2:95825188-95825446(-)$1	258	25	42	19.8541
GGGGGAGGGAGGGAGUG	chr5:137088289-137088563(-)$1	274	48	65	17.1458
AGCGGCGGGAGGGGGCG	chr19:16187710-16187985(+)$1	275	99	116	14.9583
GGGAGGGGGGAGGUCGG	chr10:74035233-74035520(+)$1	287	109	126	16.5208
ggguggggguggggggA	chr16:447637-447881(+)$1	244	92	109	21.4166
GGUGGAGAGCGGGGAGG	chr9:139743349-139743616(+)$1	267	57	74	16.3124
ggcgggcggcggggggg	chr7:77166657-77166902(+)$1	245	158	175	23.0833
AGGUGGCGAAGCGCCGG	chr19:56166190-56166469(+)$1	279	157	174	13.1875
ggguggggaggaggagg	chr17:55333777-55334021(+)$1	244	47	64	17.3541
agcuggaggagggcagg	chr6:86352753-86352998(-)$1	245	202	219	19.3333
agccgggggugugggGG	chr17:37824279-37824595(+)$1	316	212	229	16.6249
ggguggggaagggcugg	chr22:50013866-50014179(-)$1	313	96	113	21.6250
GGGAGGAGGAGGGUGGU	chr12:54679569-54679839(+)$1	270	72	89	17.6666
gggcgagcgcgggcagg	chr2:97535457-97535860(-)$1	403	150	167	16.1041
ggucgggggcgggcggg	chr19:15442553-15442800(-)$1	247	28	45	23.3958
CUCGGGGGGCGGGGGGA	chr6:117996612-117996872(+)$1	260	104	121	14.2291
AGAUGGGGUCUGGAGGG	chr19:18547582-18547872(-)$1	290	127	144	13.1875
GGUUGGGGGCGGGGUCG	chr19:2270212-2270478(+)$1	266	8	25	20.5833
AGGGGGCGGCGGUGGCG	chr1:213031640-213031908(+)$1	268	176	193	14.3333
GUGGGGGGAUGGGUGGG	chr19:4038352-4038641(+)$1	289	99	116	18.0833
ggcgggcggcggggggg	chr7:77166720-77166992(+)$1	272	95	112	23.0833

#otherMatches

#Struct PSSM
=========[dddd[bb	chr16:67596187-67596451(-)$1	264	120	137	13.7083
DDDDHHHHHHHHA{BB{	chr5:53180024-53180291(-)$1	267	67	84	21.8333
fffff[a[bb[ddddee	chr4:2935990-2936301(-)$1	311	99	116	20.6874
GGGGGKKALLLCCCLLL	chr6:86352570-86352817(-)$1	247	21	38	19.3333
::::::eeeee!!ccc[	chr16:30535380-30535645(-)$1	265	101	118	22.7708
ffff!!ffffffbb###	chr12:109124510-109124804(-)$1	294	77	94	25.3749
fffffeeeee::CCC{B	chr8:103424365-103424615(-)$1	250	78	95	13.9166
FFF}EEEEE::eeeeem	chr2:183902916-183903198(-)$1	282	130	147	16.8333
eeeee!!ccc[ccclll	chr14:70238226-70238465(+)$1	239	70	87	14.1249
========ffffff[cc	chr8:101964436-101964710(-)$1	274	215	232	17.2499
eeeee:DDDDLLLBBLL	chr7:77166501-77166742(+)$1	241	61	78	15.8958
LCCCIIIIIIIII::::	chr8:41787600-41787856(-)$1	256	104	121	15.8958
""bb!!bb!!dddd[hh	chr2:191513668-191513927(+)$1	259	27	44	21.8333
3ffffff]dddd99999	chr2:28974727-28975030(+)$1	303	139	156	12.8750
B}DDDD:cccqqqqqqq	chr20:57467335-57467628(+)$1	293	271	288	14.0208
=============]ccc	chr3:185542677-185542941(-)$1	264	59	76	20.6874
==========55555dd	chr14:70238180-70238426(+)$1	246	116	133	14.1249
===]adddd22bb]ccc	chr9:139560093-139560362(+)$1	269	229	246	13.3958
[==========aooooo	chr19:7978203-7978516(+)$1	313	210	227	16.4166
]bb:FFFFFFccc[bb!	chr8:25315656-25315901(-)$1	245	198	215	16.3124
bbeeeee::dddd[ddd	chr19:1104619-1104865(+)$1	246	96	113	19.8541
ddddddddccc[bb[bb	chr7:5569450-5569692(-)$1	242	20	37	14.4375
]ccciiiiiiiii!!a!	chr19:1104347-1104709(+)$1	362	203	220	20.7916
KKBB{BB{A{A{BB{CC	chr6:34664409-34664669(-)$1	260	66	83	12.5625
qqqqqqqqcccdddd]b	chr12:109124332-109124592(-)$1	260	50	67	20.3749
(((a[dddd%%%%%%cc	chr3:100428662-100428949(+)$1	287	40	57	16.2083
]ccc333ccc:iiiiii	chr14:23791032-23791285(+)$1	253	112	129	19.8541
NNEEEEE{A{EEEEE{E	chr2:95825188-95825446(-)$1	258	25	42	19.8541
[dddd[bb[cccppppp	chr5:137088289-137088563(-)$1	274	48	65	17.1458
ttbb]a]eeeee22bb]	chr19:16187710-16187985(+)$1	275	99	116	14.9583
wwwwwwwwwwwwwdddd	chr10:74035233-74035520(+)$1	287	109	126	16.5208
HH{A{EEEEE::bb[dd	chr16:447637-447881(+)$1	244	92	109	21.4166
b]a]bbHHHHHHHHBBK	chr9:139743349-139743616(+)$1	267	57	74	16.3124
YDDDDGGGGGGG}A}CC	chr7:77166657-77166902(+)$1	245	158	175	23.0833
ffffccc%%%%%%eeee	chr19:56166190-56166469(+)$1	279	157	174	13.1875
ffffff"""dddd!!dd	chr17:55333777-55334021(+)$1	244	47	64	17.3541
::cccqqqqqqqqccc:	chr6:86352753-86352998(-)$1	245	202	219	19.3333
33ccc]bb]a]a]a444	chr17:37824279-37824595(+)$1	316	212	229	16.6249
d]dddd::::CCCCCCH	chr22:50013866-50014179(-)$1	313	96	113	21.6250
xxxxxxbb]a]a]a]ff	chr12:54679569-54679839(+)$1	270	72	89	17.6666
cooooooccc]ccc22e	chr2:97535457-97535860(-)$1	403	150	167	16.1041
MMMMDDDDFFFFFF{CC	chr19:15442553-15442800(-)$1	247	28	45	23.3958
ddd!!a[ccc####fff	chr6:117996612-117996872(+)$1	260	104	121	14.2291
''''''ggggggg[ggg	chr19:18547582-18547872(-)$1	290	127	144	13.1875
B{JJJJJJJJJJJJKKE	chr19:2270212-2270478(+)$1	266	8	25	20.5833
qa22ccc]bbDDDD}DD	chr1:213031640-213031908(+)$1	268	176	193	14.3333
dd22ggggggg]bb22e	chr19:4038352-4038641(+)$1	289	99	116	18.0833
Hddddbbcccooooooc	chr7:77166720-77166992(+)$1	272	95	112	23.0833

#DB
(((((((((.((((.((	chr16:67596187-67596451(-)$1	1	120	137	13.7083
))))))))))))(.((.	chr5:53180024-53180291(-)$1	1	67	84	21.8333
(((((.(.((.((((((	chr4:2935990-2936301(-)$1	1	99	116	20.6874
(((((..(...(((...	chr6:86352570-86352817(-)$1	1	21	38	19.3333
......(((((..(((.	chr16:30535380-30535645(-)$1	1	101	118	22.7708
((((..((((((((...	chr12:109124510-109124804(-)$1	1	77	94	25.3749
))))))))))..(((.(	chr8:103424365-103424615(-)$1	1	78	95	13.9166
))).)))))..(((((.	chr2:183902916-183903198(-)$1	1	130	147	16.8333
(((((..(((.(((...	chr14:70238226-70238465(+)$1	1	70	87	14.1249
))))))))((((((.((	chr8:101964436-101964710(-)$1	1	215	232	17.2499
))))).((((...((..	chr7:77166501-77166742(+)$1	1	61	78	15.8958
.((((((((((((....	chr8:41787600-41787856(-)$1	1	104	121	15.8958
..((..((..((((.((	chr2:191513668-191513927(+)$1	1	27	44	21.8333
.)))))).)))).....	chr2:28974727-28975030(+)$1	1	139	156	12.8750
).)))).(((.......	chr20:57467335-57467628(+)$1	1	271	288	14.0208
))))))))))))).)))	chr3:185542677-185542941(-)$1	1	59	76	20.6874
)))))))))).....))	chr14:70238180-70238426(+)$1	1	116	133	14.1249
))).)))))..)).)))	chr9:139560093-139560362(+)$1	1	229	246	13.3958
.(((((((((((.....	chr19:7978203-7978516(+)$1	1	210	227	16.4166
.)).))))))(((.((.	chr8:25315656-25315901(-)$1	1	198	215	16.3124
)))))))..((((.(((	chr19:1104619-1104865(+)$1	1	96	113	19.8541
(((((((((((.((.((	chr7:5569450-5569692(-)$1	1	20	37	14.4375
.)))(((((((((..(.	chr19:1104347-1104709(+)$1	1	203	220	20.7916
..((.((.(.(.((.((	chr6:34664409-34664669(-)$1	1	66	83	12.5625
........))))))).)	chr12:109124332-109124592(-)$1	1	50	67	20.3749
...(.((((......((	chr3:100428662-100428949(+)$1	1	40	57	16.2083
.)))...))).((((((	chr14:23791032-23791285(+)$1	1	112	129	19.8541
..(((((.(.(((((.(	chr2:95825188-95825446(-)$1	1	25	42	19.8541
.((((.((.(((.....	chr5:137088289-137088563(-)$1	1	48	65	17.1458
..)).).)))))..)).	chr19:16187710-16187985(+)$1	1	99	116	14.9583
.............))))	chr10:74035233-74035520(+)$1	1	109	126	16.5208
((.(.(((((..((.((	chr16:447637-447881(+)$1	1	92	109	21.4166
).).))((((((((((.	chr9:139743349-139743616(+)$1	1	57	74	16.3124
.))))))))))).).))	chr7:77166657-77166902(+)$1	1	158	175	23.0833
))))(((......((((	chr19:56166190-56166469(+)$1	1	157	174	13.1875
((((((...((((..((	chr17:55333777-55334021(+)$1	1	47	64	17.3541
..(((........))).	chr6:86352753-86352998(-)$1	1	202	219	19.3333
..))).)).).).)...	chr17:37824279-37824595(+)$1	1	212	229	16.6249
).))))....(((((((	chr22:50013866-50014179(-)$1	1	96	113	21.6250
......)).).).).))	chr12:54679569-54679839(+)$1	1	72	89	17.6666
(......))).)))..)	chr2:97535457-97535860(-)$1	1	150	167	16.1041
....((((((((((.((	chr19:15442553-15442800(-)$1	1	28	45	23.3958
(((..(.(((....(((	chr6:117996612-117996872(+)$1	1	104	121	14.2291
......(((((((.(((	chr19:18547582-18547872(-)$1	1	127	144	13.1875
(.((((((((((((..(	chr19:2270212-2270478(+)$1	1	8	25	20.5833
.)..))).)))))).))	chr1:213031640-213031908(+)$1	1	176	193	14.3333
))..))))))).))..)	chr19:4038352-4038641(+)$1	1	99	116	18.0833
((((((((((......)	chr7:77166720-77166992(+)$1	1	95	112	23.0833

#PSSM
g : 0.37	G : 0.33	A : 0.16	a : 0.08	C : 0.04	
G : 0.41	g : 0.39	A : 0.06	U : 0.06	c : 0.04	u : 0.02	
g : 0.27	G : 0.25	U : 0.14	c : 0.12	C : 0.10	A : 0.06	u : 0.04	
G : 0.29	u : 0.22	U : 0.18	g : 0.10	c : 0.08	C : 0.04	A : 0.04	a : 0.02	
G : 0.56	g : 0.43	
G : 0.45	g : 0.41	A : 0.08	C : 0.02	a : 0.02	
G : 0.33	g : 0.27	A : 0.14	c : 0.08	C : 0.06	a : 0.04	u : 0.04	U : 0.02	
G : 0.52	g : 0.37	A : 0.04	c : 0.04	a : 0.02	
g : 0.37	G : 0.35	U : 0.08	C : 0.06	a : 0.06	A : 0.06	
C : 0.29	A : 0.18	c : 0.14	a : 0.14	u : 0.10	U : 0.06	g : 0.04	G : 0.02	
G : 0.52	g : 0.41	a : 0.02	A : 0.02	U : 0.02	
G : 0.49	g : 0.31	u : 0.04	c : 0.04	C : 0.04	a : 0.04	U : 0.02	
G : 0.52	g : 0.41	c : 0.02	C : 0.02	U : 0.02	
U : 0.18	G : 0.18	g : 0.18	c : 0.16	C : 0.12	A : 0.06	u : 0.04	a : 0.04	
g : 0.22	G : 0.20	a : 0.14	U : 0.14	A : 0.12	C : 0.08	c : 0.04	u : 0.02	
G : 0.43	g : 0.37	C : 0.10	c : 0.04	A : 0.02	U : 0.02	
G : 0.52	g : 0.35	A : 0.04	C : 0.02	c : 0.02	u : 0.02	U : 0.02	

#score	849.4583333333334
#seq	48
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_CDS_m2_run1.nuc.txt

#NT
AUUCUUUC	chr16:23672482-23672703(+)$1	221	14	22	12.0882
UUUCUCUU	chr4:155507958-155508171(-)$1	213	71	79	13.2647
UCUCUUUG	chr7:107580424-107580677(-)$1	253	226	234	12.9705
UUUCUUUC	chr6:142725003-142725210(+)$1	207	122	130	16.5735
UUUCUCUU	chr7:22857523-22857770(-)$1	247	77	85	13.2647
UUUCUUUU	chr12:56489394-56489686(+)$1	292	221	229	17.0147
UCUCUUUG	chr11:61732068-61732317(-)$1	249	73	81	12.9705
UUUGUUUG	chr17:79813287-79813533(-)$1	246	56	64	13.5588
UUUCUGUG	chr5:154190714-154191005(+)$1	291	273	281	12.6764
UUUUUUUU	chr12:16510438-16510730(+)$1	292	76	84	13.7794
UUUAUUUC	chr14:23944861-23945088(+)$1	227	63	71	13.1176
UUUCUGUU	chr12:9245960-9246189(-)$1	229	199	207	13.1176
UUUCUUUU	chr7:6066422-6066694(-)$1	272	89	97	17.0147
UUUCUCUA	chr11:62285897-62286159(-)$1	262	103	111	11.7941
UUUCUGUG	chr11:68131279-68131512(+)$1	233	127	135	12.6764
UUUCUUCC	chr1:146680429-146680715(-)$1	286	85	93	12.0147
UUUCUUUC	chr11:61090384-61090647(-)$1	263	52	60	16.5735
UUUCUUUG	chr9:108120524-108120741(+)$1	217	202	210	16.5735
UGUCUUUC	chr18:57016258-57016480(-)$1	222	1	9	12.6029
UUUGUUUU	chr1:46775763-46776039(+)$1	276	36	44	13.9999
UUUCUUUU	chr2:162881245-162881551(-)$1	306	6	14	17.0147
UUUGUUUU	chr2:219098974-219099219(+)$1	245	77	85	13.9999
UGUCUUUG	chr16:27519805-27520077(-)$1	272	248	256	12.6029
UCUCUUUC	chr2:216226627-216226873(-)$1	246	226	234	12.9705
UUUCUUCU	chr17:26962450-26962722(-)$1	272	76	84	12.4558
UUUCUCUC	chr1:93300268-93300517(+)$1	249	50	58	12.8235
UUGCUUUG	chr1:43218144-43218389(-)$1	245	43	51	12.0882
UUUCUUUC	chr3:186334205-186334416(+)$1	211	13	21	16.5735
UCUCUUUG	chr9:107620752-107621054(-)$1	302	51	59	12.9705
UUUCUCUU	chr14:68144926-68145209(-)$1	283	51	59	13.2647
UGUCUUUU	chr3:148927870-148928116(-)$1	246	220	228	13.0441
UUUCUGUC	chr17:42089377-42089614(-)$1	237	124	132	12.6764
UUUCUUUU	chr2:182781000-182781241(+)$1	241	185	193	17.0147
UUUUUUUC	chr17:75199619-75199841(+)$1	222	165	173	13.3382
AUUCUUUG	chr10:51580500-51580710(+)$1	210	8	16	12.0882
UUACUUUG	chr2:21232525-21232730(-)$1	205	154	162	12.0147
GUUCUUUC	chr2:70488243-70488499(+)$1	256	41	49	11.9411
UUUGUUUA	chr3:145838849-145839102(-)$1	253	56	64	12.5294
UUUCUUUC	chr17:25638432-25638733(+)$1	301	25	33	16.5735
UUUCUUCU	chr15:99478020-99478293(+)$1	273	20	28	12.4558
uuuCUUUU	chr2:62099292-62099517(-)$1	225	21	29	17.0147
UCUCUUUG	chr7:107580347-107580607(-)$1	260	156	164	12.9705
UUUCUCUA	chr9:14756271-14756511(-)$1	240	9	17	11.7941
UUUCUUUG	chr11:125488239-125488497(+)$1	258	39	47	16.5735
UUCCUUUC	chr6:37140835-37141049(+)$1	214	47	55	12.0882
UUGCUUUU	chr5:77717606-77717855(+)$1	249	119	127	12.5294
UUUCUUUG	chr1:93621793-93622061(-)$1	268	93	101	16.5735
UUUUUUUA	chr1:76253133-76253389(+)$1	256	166	174	12.3088
UUUCUUUG	chr5:179149837-179150055(+)$1	218	2	10	16.5735
UUUGUUUG	chr3:133495924-133496138(+)$1	214	8	16	13.5588
UUUCUUUG	chr6:3289944-3290202(-)$1	258	91	99	16.5735
AUUCUUUG	chr10:72619028-72619288(+)$1	260	39	47	12.0882
UUUGUUUC	chr3:130712712-130712980(+)$1	268	236	244	13.5588
UUUUUUUC	chr9:110091764-110092028(+)$1	264	38	46	13.3382
UUUGUUUU	chr2:47707860-47708111(+)$1	251	159	167	13.9999
UUUCUAUU	chr7:103138458-103138682(-)$1	224	182	190	12.8970
UUUAUUUG	chr4:79409974-79410290(+)$1	316	305	313	13.1176
UUUUUUUU	chr6:133138042-133138270(+)$1	228	25	33	13.7794
UUUGUUUU	chr12:1017559-1017796(+)$1	237	70	78	13.9999
UCUCUUUU	chr12:1017030-1017289(+)$1	259	177	185	13.4117
UUUCUUUA	chr4:187630412-187630680(-)$1	268	165	173	15.5441
UUUAUUUU	chr11:121391281-121391546(+)$1	265	66	74	13.5588
UCUCUUUU	chr2:71375054-71375295(+)$1	241	62	70	13.4117
UCUCUUUC	chr20:4680315-4680620(+)$1	305	281	289	12.9705
UUUCUUUU	chr3:58106926-58107213(+)$1	287	29	37	17.0147
UUUUUUUU	chr3:133489312-133489516(+)$1	204	5	13	13.7794
UUUGUUUC	chr3:183898563-183898864(+)$1	301	52	60	13.5588

#otherMatches

#Struct PSSM
ffffffpp	chr2:21225430-21225656(-)$1	226	120	128	12.0882
::::::cc	chr16:23672482-23672703(+)$1	221	14	22	12.0882
KKBB{EEE	chr4:155507958-155508171(-)$1	213	71	79	13.2647
4ddddccc	chr7:107580424-107580677(-)$1	253	226	234	12.9705
FFFF::::	chr6:142725003-142725210(+)$1	207	122	130	16.5735
hhhhdddd	chr7:22857523-22857770(-)$1	247	77	85	13.2647
>>>>>>>>	chr12:56489394-56489686(+)$1	292	221	229	17.0147
dd[bbbb!	chr11:61732068-61732317(-)$1	249	73	81	12.9705
ccc333ee	chr17:79813287-79813533(-)$1	246	56	64	13.5588
dd::eeee	chr5:154190714-154191005(+)$1	291	273	281	12.6764
EMMMMDDD	chr12:16510438-16510730(+)$1	292	76	84	13.7794
==="""bb	chr14:23944861-23945088(+)$1	227	63	71	13.1176
666666==	chr12:9245960-9246189(-)$1	229	199	207	13.1176
eeeee]ee	chr7:6066422-6066694(-)$1	272	89	97	17.0147
xxxxxxxx	chr11:62285897-62286159(-)$1	262	103	111	11.7941
dd[bb[a!	chr11:68131279-68131512(+)$1	233	127	135	12.6764
eeeeeddd	chr1:146680429-146680715(-)$1	286	85	93	12.0147
"""hhhhh	chr11:61090384-61090647(-)$1	263	52	60	16.5735
YYAYYGGG	chr9:108120524-108120741(+)$1	217	202	210	16.5735
::::::DD	chr18:57016258-57016480(-)$1	222	1	9	12.6029
::iiiiii	chr1:46775763-46776039(+)$1	276	36	44	13.9999
::DDDD{J	chr2:162881245-162881551(-)$1	306	6	14	17.0147
JJJJ::::	chr2:219098974-219099219(+)$1	245	77	85	13.9999
]cccffff	chr16:27519805-27520077(-)$1	272	248	256	12.6029
EZZZEEEE	chr2:216226627-216226873(-)$1	246	226	234	12.9705
::::::cc	chr17:26962450-26962722(-)$1	272	76	84	12.4558
drrrrrrr	chr1:93300268-93300517(+)$1	249	50	58	12.8235
d[bb"""e	chr1:43218144-43218389(-)$1	245	43	51	12.0882
========	chr3:186334205-186334416(+)$1	211	13	21	16.5735
"""ggggg	chr9:107620752-107621054(-)$1	302	51	59	12.9705
WWWWWWWW	chr14:68144926-68145209(-)$1	283	51	59	13.2647
========	chr3:148927870-148928116(-)$1	246	220	228	13.0441
oooooddd	chr17:42089377-42089614(-)$1	237	124	132	12.6764
iiiiii]d	chr2:182781000-182781241(+)$1	241	185	193	17.0147
cc::::::	chr17:75199619-75199841(+)$1	222	165	173	13.3382
::::ffff	chr10:51580500-51580710(+)$1	210	8	16	12.0882
mmmdddd:	chr2:21232525-21232730(-)$1	205	154	162	12.0147
GGGGGGDD	chr2:70488243-70488499(+)$1	256	41	49	11.9411
======cc	chr3:145838849-145839102(-)$1	253	56	64	12.5294
"""ddddu	chr17:25638432-25638733(+)$1	301	25	33	16.5735
::hhhhhh	chr15:99478020-99478293(+)$1	273	20	28	12.4558
hh]bb:DD	chr2:62099292-62099517(-)$1	225	21	29	17.0147
HHHeeeee	chr7:107580347-107580607(-)$1	260	156	164	12.9705
FFFFFFFF	chr9:14756271-14756511(-)$1	240	9	17	11.7941
hhhhhhh[	chr11:125488239-125488497(+)$1	258	39	47	16.5735
d]bb7777	chr6:37140835-37141049(+)$1	214	47	55	12.0882
hhhh::::	chr5:77717606-77717855(+)$1	249	119	127	12.5294
ffffff]c	chr1:93621793-93622061(-)$1	268	93	101	16.5735
iiiiiiii	chr1:76253133-76253389(+)$1	256	166	174	12.3088
eeeooooo	chr5:179149837-179150055(+)$1	218	2	10	16.5735
mmma]fff	chr3:133495924-133496138(+)$1	214	8	16	13.5588
E{GGGGGG	chr6:3289944-3290202(-)$1	258	91	99	16.5735
GGG{DDDD	chr10:72619028-72619288(+)$1	260	39	47	12.0882
eeeee]ee	chr3:130712712-130712980(+)$1	268	236	244	13.5588
NNNNNHHH	chr9:110091764-110092028(+)$1	264	38	46	13.3382
[ddddmmm	chr2:47707860-47708111(+)$1	251	159	167	13.9999
ee4444gg	chr7:103138458-103138682(-)$1	224	182	190	12.8970
hhh:::::	chr4:79409974-79410290(+)$1	316	305	313	13.1176
HH{CCCPP	chr6:133138042-133138270(+)$1	228	25	33	13.7794
""ccc"""	chr12:1017559-1017796(+)$1	237	70	78	13.9999
BB}BB}EE	chr12:1017030-1017289(+)$1	259	177	185	13.4117
hhhhh:::	chr4:187630412-187630680(-)$1	268	165	173	15.5441
##eeeee[	chr11:121391281-121391546(+)$1	265	66	74	13.5588
WWWWWWWW	chr2:71375054-71375295(+)$1	241	62	70	13.4117
hhhhhhhh	chr20:4680315-4680620(+)$1	305	281	289	12.9705
^^^^^^^^	chr3:58106926-58107213(+)$1	287	29	37	17.0147
::::::::	chr3:133489312-133489516(+)$1	204	5	13	13.7794
dddd!!ee	chr3:183898563-183898864(+)$1	301	52	60	13.5588

#DB
((((((..	chr2:21225430-21225656(-)$1	1	120	128	12.0882
......((	chr16:23672482-23672703(+)$1	1	14	22	12.0882
..((.(((	chr4:155507958-155508171(-)$1	1	71	79	13.2647
.)))))))	chr7:107580424-107580677(-)$1	1	226	234	12.9705
))))....	chr6:142725003-142725210(+)$1	1	122	130	16.5735
))))))))	chr7:22857523-22857770(-)$1	1	77	85	13.2647
........	chr12:56489394-56489686(+)$1	1	221	229	17.0147
((.((((.	chr11:61732068-61732317(-)$1	1	73	81	12.9705
)))...))	chr17:79813287-79813533(-)$1	1	56	64	13.5588
))..((((	chr5:154190714-154191005(+)$1	1	273	281	12.6764
(....(((	chr12:16510438-16510730(+)$1	1	76	84	13.7794
(((...((	chr14:23944861-23945088(+)$1	1	63	71	13.1176
......))	chr12:9245960-9246189(-)$1	1	199	207	13.1176
))))).))	chr7:6066422-6066694(-)$1	1	89	97	17.0147
........	chr11:62285897-62286159(-)$1	1	103	111	11.7941
((.((.(.	chr11:68131279-68131512(+)$1	1	127	135	12.6764
)))))(((	chr1:146680429-146680715(-)$1	1	85	93	12.0147
...(((((	chr11:61090384-61090647(-)$1	1	52	60	16.5735
..)..)))	chr9:108120524-108120741(+)$1	1	202	210	16.5735
......((	chr18:57016258-57016480(-)$1	1	1	9	12.6029
..((((((	chr1:46775763-46776039(+)$1	1	36	44	13.9999
..((((.(	chr2:162881245-162881551(-)$1	1	6	14	17.0147
((((....	chr2:219098974-219099219(+)$1	1	77	85	13.9999
.)))))))	chr16:27519805-27520077(-)$1	1	248	256	12.6029
)...))))	chr2:216226627-216226873(-)$1	1	226	234	12.9705
......((	chr17:26962450-26962722(-)$1	1	76	84	12.4558
(.......	chr1:93300268-93300517(+)$1	1	50	58	12.8235
(.((...(	chr1:43218144-43218389(-)$1	1	43	51	12.0882
((((((((	chr3:186334205-186334416(+)$1	1	13	21	16.5735
...(((((	chr9:107620752-107621054(-)$1	1	51	59	12.9705
........	chr14:68144926-68145209(-)$1	1	51	59	13.2647
))))))))	chr3:148927870-148928116(-)$1	1	220	228	13.0441
.....)))	chr17:42089377-42089614(-)$1	1	124	132	12.6764
)))))).)	chr2:182781000-182781241(+)$1	1	185	193	17.0147
))......	chr17:75199619-75199841(+)$1	1	165	173	13.3382
....((((	chr10:51580500-51580710(+)$1	1	8	16	12.0882
...)))).	chr2:21232525-21232730(-)$1	1	154	162	12.0147
((((((((	chr2:70488243-70488499(+)$1	1	41	49	11.9411
((((((((	chr3:145838849-145839102(-)$1	1	56	64	12.5294
...((((.	chr17:25638432-25638733(+)$1	1	25	33	16.5735
..((((((	chr15:99478020-99478293(+)$1	1	20	28	12.4558
)).)).((	chr2:62099292-62099517(-)$1	1	21	29	17.0147
)))(((((	chr7:107580347-107580607(-)$1	1	156	164	12.9705
((((((((	chr9:14756271-14756511(-)$1	1	9	17	11.7941
(((((((.	chr11:125488239-125488497(+)$1	1	39	47	16.5735
).))....	chr6:37140835-37141049(+)$1	1	47	55	12.0882
))))....	chr5:77717606-77717855(+)$1	1	119	127	12.5294
)))))).)	chr1:93621793-93622061(-)$1	1	93	101	16.5735
((((((((	chr1:76253133-76253389(+)$1	1	166	174	12.3088
(((.....	chr5:179149837-179150055(+)$1	1	2	10	16.5735
...).)))	chr3:133495924-133496138(+)$1	1	8	16	13.5588
(.((((((	chr6:3289944-3290202(-)$1	1	91	99	16.5735
(((.((((	chr10:72619028-72619288(+)$1	1	39	47	12.0882
))))).))	chr3:130712712-130712980(+)$1	1	236	244	13.5588
.....(((	chr9:110091764-110092028(+)$1	1	38	46	13.3382
.((((...	chr2:47707860-47708111(+)$1	1	159	167	13.9999
))....))	chr7:103138458-103138682(-)$1	1	182	190	12.8970
))).....	chr4:79409974-79410290(+)$1	1	305	313	13.1176
((.(((..	chr6:133138042-133138270(+)$1	1	25	33	13.7794
..(((...	chr12:1017559-1017796(+)$1	1	70	78	13.9999
)).)).))	chr12:1017030-1017289(+)$1	1	177	185	13.4117
)))))...	chr4:187630412-187630680(-)$1	1	165	173	15.5441
..(((((.	chr11:121391281-121391546(+)$1	1	66	74	13.5588
........	chr2:71375054-71375295(+)$1	1	62	70	13.4117
))))))))	chr20:4680315-4680620(+)$1	1	281	289	12.9705
........	chr3:58106926-58107213(+)$1	1	29	37	17.0147
........	chr3:133489312-133489516(+)$1	1	5	13	13.7794
((((..((	chr3:183898563-183898864(+)$1	1	52	60	13.5588

#PSSM
U : 0.92	A : 0.04	G : 0.01	u : 0.01	
U : 0.82	C : 0.11	G : 0.04	u : 0.01	
U : 0.91	C : 0.02	G : 0.02	A : 0.01	u : 0.01	
C : 0.73	G : 0.13	U : 0.08	A : 0.04	
U : 0.99	
U : 0.83	C : 0.08	G : 0.05	A : 0.01	
U : 0.95	C : 0.04	
U : 0.36	C : 0.27	G : 0.27	A : 0.07	

#score	938.7647058823514
#seq	68
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_transcript_m2_run1.nuc.txt

#NT
Ucccaacccc	chr6:148725618-148725912(+)$1	294	189	199	18.4745
UCCCAGCCCC	chr19:6731552-6731820(-)$1	268	213	223	18.9830
GCCCCUCCCC	chr22:20786625-20786924(-)$1	299	134	144	18.3050
CCCCACCCCC	chr20:61461888-61462177(+)$1	289	111	121	15.6779
uccccucacc	chr5:1064764-1065036(-)$1	272	22	32	17.5423
UCCCUUCCUC	chr1:55340849-55341165(-)$1	316	64	74	16.7796
UCCCUUCCCU	chr16:81627525-81627874(+)$1	349	0	10	17.3728
CCCCAUCCCA	chr19:50919465-50919744(+)$1	279	47	57	16.0169
UCCCCGCCCC	chr19:6718435-6718704(-)$1	269	32	42	18.4745
cccccucccc	chr16:72961845-72962124(-)$1	279	108	118	18.9830
ucccugcccc	chr20:25532120-25532395(-)$1	275	106	116	17.7966
uccccucccc	chr17:77000015-77000296(-)$1	281	210	220	21.7796
UCCCCUCCCC	chr19:55972100-55972376(-)$1	276	24	34	21.7796
GCCCCUCCCC	chr2:42396733-42396998(+)$1	265	211	221	18.3050
CCCCAUCCCC	chr7:73011496-73011751(-)$1	255	126	136	19.4915
CCCCAGCCCC	chr7:98507761-98508026(+)$1	265	62	72	16.1864
UCCCACCCCC	chr2:96931157-96931477(-)$1	320	191	201	18.4745
CCCCGUCCCC	chr19:54606415-54606736(+)$1	321	119	129	17.7118
UUCCAUCCCC	chr11:61109706-61109964(+)$1	258	106	116	17.4576
ucccgucccc	chr18:77671756-77672052(-)$1	296	95	105	20.5084
Uccccucucc	chr16:16291398-16291713(-)$1	315	98	108	17.5423
UCCCUGCCCC	chr19:5938711-5938970(-)$1	259	108	118	17.7966
GCCCAGCCCC	chrX:9491160-9491496(+)$1	336	199	209	15.5084
UCCCCUCUCC	chr20:60889068-60889372(-)$1	304	77	87	17.5423
UCCCCUCCCC	chr11:203961-204240(-)$1	279	268	278	21.7796
UCCCCUACCC	chr10:82189178-82189581(+)$1	403	388	398	17.2033
CCCCGUCCCC	chr15:90345140-90345385(-)$1	245	161	171	17.7118
ccccaucccc	chr20:47893927-47894202(-)$1	275	29	39	19.4915
ACCCAGCCCC	chr3:48461423-48461770(-)$1	347	142	152	15.3389
ucccuucccc	chr10:104044050-104044324(+)$1	274	127	137	21.1016
UCCCAUCCCA	chr13:113462381-113462708(+)$1	327	184	194	18.8135
UCCCAGCCCC	chr12:122618056-122618320(+)$1	264	59	69	18.9830
ccccauccca	chr14:88508902-88509190(+)$1	288	107	117	16.0169
UCCCUUCCCU	chr2:159507784-159508091(+)$1	307	89	99	17.3728
UCUCAUCCCC	chr2:219575734-219576092(+)$1	358	169	179	17.7966
ucccuuccca	chrX:70764928-70765189(+)$1	261	123	133	17.6271
CCCCAUCCCA	chr4:723710-724048(+)$1	338	52	62	16.0169
uccccucccc	chr19:48845164-48845485(-)$1	321	42	52	21.7796
UCCCUUCCCA	chr10:104416809-104417127(+)$1	318	188	198	17.6271
UCCCAUCCUC	chr20:56890636-56890940(+)$1	304	180	190	17.9661
UCCCAUCCUC	chr11:47310009-47310323(+)$1	314	113	123	17.9661
ucccaugccc	chr3:4315301-4315625(-)$1	324	91	101	17.7966
ucccuucucc	chr9:140157793-140158137(+)$1	344	24	34	16.8644
CCCCAUCCCC	chr7:98029424-98029736(-)$1	312	207	217	19.4915
UCCUAUCCCC	chr10:102744119-102744370(+)$1	251	41	51	17.4576
UCUCCUCCCC	chr22:51019893-51020164(-)$1	271	7	17	17.2881
uccccucccc	chr9:96059027-96059279(+)$1	252	161	171	21.7796
UCCCAUCCCU	chrX:108956100-108956449(-)$1	349	109	119	18.5593
ucccgacccc	chr16:1756701-1756998(+)$1	297	33	43	16.6949
UCCCCUGCCC	chr19:45607180-45607468(+)$1	288	112	122	17.2881
UCCCCUCACC	chr2:242595489-242595727(+)$1	238	113	123	17.5423
UCCCCUCACC	chr16:89468979-89469202(-)$1	223	22	32	17.5423
ucuccucccc	chr13:113460999-113461257(+)$1	258	120	130	17.2881
UCCCAUCCCC	chr16:68388678-68388986(+)$1	308	191	201	22.2881
UCCCUUUCCC	chr6:3403547-3403852(-)$1	305	111	121	16.5254
uccccuccuc	chr6:32083621-32083909(-)$1	288	97	107	17.4576
ucccaucccc	chr13:113537250-113537463(+)$1	213	74	84	22.2881
UCCCAUCCCA	chr6:43039317-43039620(+)$1	303	126	136	18.8135

#otherMatches

#Struct PSSM
::::::::::	chrX:149775159-149775535(+)$1	376	117	127	17.3728
::::::::::	chr6:148725618-148725912(+)$1	294	189	199	18.4745
99dddd4444	chr19:6731552-6731820(-)$1	268	213	223	18.9830
%%%%ddddnn	chr22:20786625-20786924(-)$1	299	134	144	18.3050
]eeeee::::	chr20:61461888-61462177(+)$1	289	111	121	15.6779
e:::::::::	chr5:1064764-1065036(-)$1	272	22	32	17.5423
ccdddd::::	chr1:55340849-55341165(-)$1	316	64	74	16.7796
::::::::::	chr16:81627525-81627874(+)$1	349	0	10	17.3728
::::::::::	chr19:50919465-50919744(+)$1	279	47	57	16.0169
CCCKKEEEEE	chr19:6718435-6718704(-)$1	269	32	42	18.4745
::::::::::	chr16:72961845-72962124(-)$1	279	108	118	18.9830
ooooobb444	chr20:25532120-25532395(-)$1	275	106	116	17.7966
::::::::::	chr17:77000015-77000296(-)$1	281	210	220	21.7796
DDcccnnnnn	chr19:55972100-55972376(-)$1	276	24	34	21.7796
cooooooccc	chr2:42396733-42396998(+)$1	265	211	221	18.3050
fffff:::::	chr7:73011496-73011751(-)$1	255	126	136	19.4915
cc]a]bb:::	chr7:98507761-98508026(+)$1	265	62	72	16.1864
++++++++++	chr2:96931157-96931477(-)$1	320	191	201	18.4745
fffff]a:::	chr19:54606415-54606736(+)$1	321	119	129	17.7118
ddd:::::::	chr11:61109706-61109964(+)$1	258	106	116	17.4576
>>>>>>>>>>	chr18:77671756-77672052(-)$1	296	95	105	20.5084
::::::::::	chr16:16291398-16291713(-)$1	315	98	108	17.5423
::::::::::	chr19:5938711-5938970(-)$1	259	108	118	17.7966
d55555ccca	chrX:9491160-9491496(+)$1	336	199	209	15.5084
GGG:::::::	chr20:60889068-60889372(-)$1	304	77	87	17.5423
C:::::::::	chr11:203961-204240(-)$1	279	268	278	21.7796
ppffffff::	chr10:82189178-82189581(+)$1	403	388	398	17.2033
333ccc0000	chr15:90345140-90345385(-)$1	245	161	171	17.7118
::::::::::	chr20:47893927-47894202(-)$1	275	29	39	19.4915
C{DDDDKKCC	chr3:48461423-48461770(-)$1	347	142	152	15.3389
::::::::::	chr10:104044050-104044324(+)$1	274	127	137	21.1016
cc4444dddd	chr13:113462381-113462708(+)$1	327	184	194	18.8135
nnndddd:::	chr12:122618056-122618320(+)$1	264	59	69	18.9830
9999999ddd	chr14:88508902-88509190(+)$1	288	107	117	16.0169
OOOOODDDDM	chr2:159507784-159508091(+)$1	307	89	99	17.3728
xxxxxxxxxx	chr2:219575734-219576092(+)$1	358	169	179	17.7966
:::::ggggg	chrX:70764928-70765189(+)$1	261	123	133	17.6271
DDNNNNNGGG	chr4:723710-724048(+)$1	338	52	62	16.0169
::::::::::	chr19:48845164-48845485(-)$1	321	42	52	21.7796
ff[bb!!bb[	chr10:104416809-104417127(+)$1	318	188	198	17.6271
eeeee::ddd	chr20:56890636-56890940(+)$1	304	180	190	17.9661
H:::::::cc	chr11:47310009-47310323(+)$1	314	113	123	17.9661
:::dddd+++	chr3:4315301-4315625(-)$1	324	91	101	17.7966
JJJJ{BB:::	chr9:140157793-140158137(+)$1	344	24	34	16.8644
@@@@@@@@@@	chr7:98029424-98029736(-)$1	312	207	217	19.4915
::::::::::	chr10:102744119-102744370(+)$1	251	41	51	17.4576
EEEEELLLCC	chr22:51019893-51020164(-)$1	271	7	17	17.2881
::::::::::	chr9:96059027-96059279(+)$1	252	161	171	21.7796
::::::::::	chrX:108956100-108956449(-)$1	349	109	119	18.5593
FFFFF:::dd	chr16:1756701-1756998(+)$1	297	33	43	16.6949
::::::::::	chr19:45607180-45607468(+)$1	288	112	122	17.2881
::::::::::	chr2:242595489-242595727(+)$1	238	113	123	17.5423
GSSSSSSSSS	chr16:89468979-89469202(-)$1	223	22	32	17.5423
ddd]ddddEE	chr13:113460999-113461257(+)$1	258	120	130	17.2881
xxxxxxxxxx	chr16:68388678-68388986(+)$1	308	191	201	22.2881
bb]ffffff:	chr6:3403547-3403852(-)$1	305	111	121	16.5254
::::::::::	chr6:32083621-32083909(-)$1	288	97	107	17.4576
c:::::::::	chr13:113537250-113537463(+)$1	213	74	84	22.2881
::::::::::	chr6:43039317-43039620(+)$1	303	126	136	18.8135

#DB
..........	chrX:149775159-149775535(+)$1	1	117	127	17.3728
..........	chr6:148725618-148725912(+)$1	1	189	199	18.4745
..))))....	chr19:6731552-6731820(-)$1	1	213	223	18.9830
....((((..	chr22:20786625-20786924(-)$1	1	134	144	18.3050
.)))))....	chr20:61461888-61462177(+)$1	1	111	121	15.6779
).........	chr5:1064764-1065036(-)$1	1	22	32	17.5423
))))))....	chr1:55340849-55341165(-)$1	1	64	74	16.7796
..........	chr16:81627525-81627874(+)$1	1	0	10	17.3728
..........	chr19:50919465-50919744(+)$1	1	47	57	16.0169
(((..(((((	chr19:6718435-6718704(-)$1	1	32	42	18.4745
..........	chr16:72961845-72962124(-)$1	1	108	118	18.9830
.....))...	chr20:25532120-25532395(-)$1	1	106	116	17.7966
..........	chr17:77000015-77000296(-)$1	1	210	220	21.7796
(((((.....	chr19:55972100-55972376(-)$1	1	24	34	21.7796
(......)))	chr2:42396733-42396998(+)$1	1	211	221	18.3050
))))).....	chr7:73011496-73011751(-)$1	1	126	136	19.4915
)).).))...	chr7:98507761-98508026(+)$1	1	62	72	16.1864
..........	chr2:96931157-96931477(-)$1	1	191	201	18.4745
))))).)...	chr19:54606415-54606736(+)$1	1	119	129	17.7118
))).......	chr11:61109706-61109964(+)$1	1	106	116	17.4576
..........	chr18:77671756-77672052(-)$1	1	95	105	20.5084
..........	chr16:16291398-16291713(-)$1	1	98	108	17.5423
..........	chr19:5938711-5938970(-)$1	1	108	118	17.7966
).....)))(	chrX:9491160-9491496(+)$1	1	199	209	15.5084
))).......	chr20:60889068-60889372(-)$1	1	77	87	17.5423
).........	chr11:203961-204240(-)$1	1	268	278	21.7796
..))))))..	chr10:82189178-82189581(+)$1	1	388	398	17.2033
...)))....	chr15:90345140-90345385(-)$1	1	161	171	17.7118
..........	chr20:47893927-47894202(-)$1	1	29	39	19.4915
(.((((..((	chr3:48461423-48461770(-)$1	1	142	152	15.3389
..........	chr10:104044050-104044324(+)$1	1	127	137	21.1016
))....))))	chr13:113462381-113462708(+)$1	1	184	194	18.8135
...))))...	chr12:122618056-122618320(+)$1	1	59	69	18.9830
.......)))	chr14:88508902-88509190(+)$1	1	107	117	16.0169
.....((((.	chr2:159507784-159508091(+)$1	1	89	99	17.3728
..........	chr2:219575734-219576092(+)$1	1	169	179	17.7966
.....(((((	chrX:70764928-70765189(+)$1	1	123	133	17.6271
((.....(((	chr4:723710-724048(+)$1	1	52	62	16.0169
..........	chr19:48845164-48845485(-)$1	1	42	52	21.7796
((.((..((.	chr10:104416809-104417127(+)$1	1	188	198	17.6271
)))))..(((	chr20:56890636-56890940(+)$1	1	180	190	17.9661
(.......((	chr11:47310009-47310323(+)$1	1	113	123	17.9661
...((((...	chr3:4315301-4315625(-)$1	1	91	101	17.7966
((((.((...	chr9:140157793-140158137(+)$1	1	24	34	16.8644
..........	chr7:98029424-98029736(-)$1	1	207	217	19.4915
..........	chr10:102744119-102744370(+)$1	1	41	51	17.4576
(((((...((	chr22:51019893-51020164(-)$1	1	7	17	17.2881
..........	chr9:96059027-96059279(+)$1	1	161	171	21.7796
..........	chrX:108956100-108956449(-)$1	1	109	119	18.5593
(((((...((	chr16:1756701-1756998(+)$1	1	33	43	16.6949
..........	chr19:45607180-45607468(+)$1	1	112	122	17.2881
..........	chr2:242595489-242595727(+)$1	1	113	123	17.5423
(.........	chr16:89468979-89469202(-)$1	1	22	32	17.5423
))).))))((	chr13:113460999-113461257(+)$1	1	120	130	17.2881
..........	chr16:68388678-68388986(+)$1	1	191	201	22.2881
)).)))))).	chr6:3403547-3403852(-)$1	1	111	121	16.5254
..........	chr6:32083621-32083909(-)$1	1	97	107	17.4576
).........	chr13:113537250-113537463(+)$1	1	74	84	22.2881
..........	chr6:43039317-43039620(+)$1	1	126	136	18.8135

#PSSM
U : 0.49	u : 0.25	C : 0.13	G : 0.05	c : 0.05	A : 0.01	
C : 0.64	c : 0.33	U : 0.01	
C : 0.62	c : 0.32	U : 0.03	u : 0.01	
C : 0.64	c : 0.33	U : 0.01	
A : 0.33	C : 0.18	c : 0.13	U : 0.10	u : 0.08	a : 0.08	G : 0.03	g : 0.03	
U : 0.50	u : 0.28	G : 0.11	a : 0.03	C : 0.03	g : 0.01	
C : 0.61	c : 0.32	A : 0.01	g : 0.01	G : 0.01	U : 0.01	
C : 0.61	c : 0.28	u : 0.03	A : 0.03	a : 0.01	U : 0.01	
C : 0.61	c : 0.32	U : 0.05	u : 0.01	
C : 0.52	c : 0.28	A : 0.08	U : 0.05	a : 0.03	u : 0.01	

#score	1075.4237288135594
#seq	59
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_UTR_m2_run1.nuc.txt

#NT
UGGG	chr2:61764915-61765188(-)$1	273	161	165	12.0000
UGGG	chr10:81930512-81930773(-)$1	261	4	8	12.0000
UGGG	chr8:144678735-144678984(-)$1	249	101	105	12.0000
UGGG	chr22:41487700-41487993(+)$1	293	107	111	12.0000
UGGG	chr1:2122255-2122537(-)$1	282	4	8	12.0000
UGGG	chr22:42475629-42475906(+)$1	277	16	20	12.0000
UGGG	chr19:50168527-50168748(-)$1	221	107	111	12.0000
UGGG	chr7:128502834-128503091(+)$1	257	8	12	12.0000
UGGG	chr17:28443826-28444122(+)$1	296	83	87	12.0000
UGGG	chr11:61583217-61583513(-)$1	296	0	4	12.0000
UGGG	chr16:83841505-83841826(+)$1	321	162	166	12.0000
Uggg	chr19:55918960-55919226(-)$1	266	191	195	12.0000
UGGG	chr11:77790701-77790975(-)$1	274	36	40	12.0000
uggg	chr6:149638937-149639220(+)$1	283	154	158	12.0000
uggg	chr1:1284341-1284619(-)$1	278	21	25	12.0000
UGGG	chr4:38666236-38666544(+)$1	308	27	31	12.0000
UGGG	chr13:114538558-114538799(-)$1	241	53	57	12.0000
UGGG	chr21:35287931-35288175(-)$1	244	172	176	12.0000
UGGG	chr9:33817517-33817782(+)$1	265	87	91	12.0000
UGGG	chr1:110527466-110527730(+)$1	264	26	30	12.0000
UGGG	chr6:3157563-3157837(-)$1	274	44	48	12.0000
UGGG	chr2:26256923-26257202(+)$1	279	103	107	12.0000
UGGG	chr9:131583329-131583598(-)$1	269	4	8	12.0000
UGgg	chr17:56406010-56406220(-)$1	210	2	6	12.0000
UGGG	chr16:2059504-2059767(-)$1	263	141	145	12.0000
UGGG	chr17:27717345-27717620(+)$1	275	34	38	12.0000
UGGG	chr6:44094974-44095228(-)$1	254	50	54	12.0000
UGGG	chr7:150779622-150779883(-)$1	261	1	5	12.0000
UGGG	chr16:75600209-75600509(+)$1	300	206	210	12.0000
UGGG	chr19:19739149-19739413(-)$1	264	32	36	12.0000
UGGG	chr5:177631506-177631780(+)$1	274	69	73	12.0000
UGGG	chr4:103748422-103748702(-)$1	280	126	130	12.0000
UGGG	chr22:20105265-20105523(+)$1	258	44	48	12.0000
UGGG	chr2:10952703-10953008(-)$1	305	91	95	12.0000
UGGG	chr15:52861017-52861288(-)$1	271	110	114	12.0000
uggg	chr19:1883547-1883796(-)$1	249	20	24	12.0000
UGGG	chr12:49524979-49525259(-)$1	280	244	248	12.0000
UGGG	chr6:26124323-26124609(+)$1	286	219	223	12.0000
UGGG	chr11:2414878-2415196(+)$1	318	12	16	12.0000
UGGG	chr9:35731969-35732222(-)$1	253	22	26	12.0000
uggg	chr16:619212-619558(+)$1	346	34	38	12.0000
UGGG	chr6:146135599-146135941(-)$1	342	71	75	12.0000
UGGG	chr17:76182929-76183198(-)$1	269	215	219	12.0000
UGGG	chr12:123464018-123464274(+)$1	256	7	11	12.0000
UGGG	chr16:29821991-29822261(+)$1	270	124	128	12.0000
UGGG	chr7:150779555-150779804(-)$1	249	27	31	12.0000
uggg	chr4:2935992-2936267(-)$1	275	216	220	12.0000
UGGG	chr10:74856424-74856698(-)$1	274	133	137	12.0000
UGGG	chr2:28974800-28975048(+)$1	248	40	44	12.0000
UGGG	chr5:138629493-138629749(+)$1	256	38	42	12.0000
UGGG	chr2:85772035-85772325(+)$1	290	114	118	12.0000
uggg	chr8:102217326-102217680(-)$1	354	94	98	12.0000
UGGG	chr2:26257002-26257284(+)$1	282	24	28	12.0000
UGGG	chr14:50359732-50359973(+)$1	241	89	93	12.0000
UGGG	chr9:139743351-139743631(+)$1	280	90	94	12.0000
UGGG	chr17:46653889-46654097(-)$1	208	99	103	12.0000
Uggg	chr7:151216139-151216400(-)$1	261	56	60	12.0000
UGGG	chrX:109246147-109246446(+)$1	299	65	69	12.0000
UGGG	chr15:52121799-52122096(+)$1	297	105	109	12.0000
UGGG	chr7:150020012-150020257(+)$1	245	79	83	12.0000
UGGG	chr6:32157447-32157877(-)$1	430	84	88	12.0000
uggg	chr15:100106496-100106788(+)$1	292	38	42	12.0000
UGGG	chr17:26903718-26903987(-)$1	269	251	255	12.0000
UGGG	chr9:139904698-139905032(-)$1	334	17	21	12.0000
UGGG	chr9:123631026-123631310(-)$1	284	34	38	12.0000
UGGG	chrX:44732680-44732937(+)$1	257	46	50	12.0000
UGGG	chr22:20073322-20073559(+)$1	237	199	203	12.0000
UGGG	chr11:64124699-64124950(+)$1	251	39	43	12.0000
UGGG	chr5:177022803-177023067(+)$1	264	31	35	12.0000
UGGG	chr13:113863753-113864052(+)$1	299	52	56	12.0000
UGGG	chr22:19951906-19952181(+)$1	275	54	58	12.0000
UGGG	chr16:85646738-85646977(+)$1	239	59	63	12.0000
UGGG	chr1:228284677-228284942(+)$1	265	6	10	12.0000
UGGG	chr11:118926684-118926964(-)$1	280	15	19	12.0000
UGGG	chr9:140260701-140260971(-)$1	270	37	41	12.0000
uggg	chr1:36789200-36789504(+)$1	304	95	99	12.0000
UGGG	chr14:90864495-90864743(+)$1	248	70	74	12.0000
UGGG	chr4:1228587-1228828(-)$1	241	112	116	12.0000
UGGG	chr2:130939790-130940064(+)$1	274	6	10	12.0000
UGGG	chr17:76116534-76116818(-)$1	284	3	7	12.0000
UGGG	chr15:66084361-66084613(-)$1	252	96	100	12.0000
UGGG	chrX:47442721-47443001(+)$1	280	13	17	12.0000
UGGG	chr5:132202458-132202720(+)$1	262	21	25	12.0000
uggg	chr17:76793997-76794250(-)$1	253	30	34	12.0000
UGGG	chr6:167369793-167370048(-)$1	255	2	6	12.0000
UGGG	chr6:3000043-3000353(+)$1	310	22	26	12.0000
UGGG	chr8:29940270-29940491(-)$1	221	111	115	12.0000
UGGG	chr20:62152056-62152345(+)$1	289	40	44	12.0000

#otherMatches

#Struct PSSM
mmmd	chr9:35102953-35103205(-)$1	252	57	61	12.0000
dBB}	chr2:61764915-61765188(-)$1	273	161	165	12.0000
:A{H	chr10:81930512-81930773(-)$1	261	4	8	12.0000
%%%%	chr8:144678735-144678984(-)$1	249	101	105	12.0000
hhh]	chr22:41487700-41487993(+)$1	293	107	111	12.0000
EEEE	chr1:2122255-2122537(-)$1	282	4	8	12.0000
d!!e	chr22:42475629-42475906(+)$1	277	16	20	12.0000
eeee	chr19:50168527-50168748(-)$1	221	107	111	12.0000
JJJJ	chr7:128502834-128503091(+)$1	257	8	12	12.0000
ddd[	chr17:28443826-28444122(+)$1	296	83	87	12.0000
:::F	chr11:61583217-61583513(-)$1	296	0	4	12.0000
]bbG	chr16:83841505-83841826(+)$1	321	162	166	12.0000
a]ee	chr19:55918960-55919226(-)$1	266	191	195	12.0000
dd[f	chr11:77790701-77790975(-)$1	274	36	40	12.0000
mccc	chr6:149638937-149639220(+)$1	283	154	158	12.0000
eee:	chr1:1284341-1284619(-)$1	278	21	25	12.0000
JJJJ	chr4:38666236-38666544(+)$1	308	27	31	12.0000
$$$=	chr13:114538558-114538799(-)$1	241	53	57	12.0000
d[dd	chr21:35287931-35288175(-)$1	244	172	176	12.0000
ccDD	chr9:33817517-33817782(+)$1	265	87	91	12.0000
llcc	chr1:110527466-110527730(+)$1	264	26	30	12.0000
ffff	chr6:3157563-3157837(-)$1	274	44	48	12.0000
wwww	chr2:26256923-26257202(+)$1	279	103	107	12.0000
FFFF	chr9:131583329-131583598(-)$1	269	4	8	12.0000
CCCN	chr17:56406010-56406220(-)$1	210	2	6	12.0000
CCC{	chr16:2059504-2059767(-)$1	263	141	145	12.0000
{DDD	chr17:27717345-27717620(+)$1	275	34	38	12.0000
d"""	chr6:44094974-44095228(-)$1	254	50	54	12.0000
a[ee	chr7:150779622-150779883(-)$1	261	1	5	12.0000
IIII	chr16:75600209-75600509(+)$1	300	206	210	12.0000
====	chr19:19739149-19739413(-)$1	264	32	36	12.0000
aJJJ	chr5:177631506-177631780(+)$1	274	69	73	12.0000
ggg:	chr4:103748422-103748702(-)$1	280	126	130	12.0000
iiii	chr22:20105265-20105523(+)$1	258	44	48	12.0000
]ggg	chr2:10952703-10953008(-)$1	305	91	95	12.0000
:::d	chr15:52861017-52861288(-)$1	271	110	114	12.0000
e!!d	chr19:1883547-1883796(-)$1	249	20	24	12.0000
YEEE	chr12:49524979-49525259(-)$1	280	244	248	12.0000
ff[c	chr6:26124323-26124609(+)$1	286	219	223	12.0000
b]cc	chr11:2414878-2415196(+)$1	318	12	16	12.0000
eeee	chr9:35731969-35732222(-)$1	253	22	26	12.0000
gggg	chr16:619212-619558(+)$1	346	34	38	12.0000
b]a:	chr6:146135599-146135941(-)$1	342	71	75	12.0000
eeee	chr17:76182929-76183198(-)$1	269	215	219	12.0000
[eee	chr12:123464018-123464274(+)$1	256	7	11	12.0000
hhhh	chr16:29821991-29822261(+)$1	270	124	128	12.0000
dddn	chr7:150779555-150779804(-)$1	249	27	31	12.0000
e]bb	chr4:2935992-2936267(-)$1	275	216	220	12.0000
!ccc	chr10:74856424-74856698(-)$1	274	133	137	12.0000
BB{B	chr2:28974800-28975048(+)$1	248	40	44	12.0000
c"""	chr5:138629493-138629749(+)$1	256	38	42	12.0000
ggg6	chr2:85772035-85772325(+)$1	290	114	118	12.0000
FFFF	chr8:102217326-102217680(-)$1	354	94	98	12.0000
{A{D	chr2:26257002-26257284(+)$1	282	24	28	12.0000
:FFF	chr14:50359732-50359973(+)$1	241	89	93	12.0000
{BBK	chr9:139743351-139743631(+)$1	280	90	94	12.0000
qqqq	chr17:46653889-46654097(-)$1	208	99	103	12.0000
c!!=	chr7:151216139-151216400(-)$1	261	56	60	12.0000
rrrr	chrX:109246147-109246446(+)$1	299	65	69	12.0000
eecc	chr15:52121799-52122096(+)$1	297	105	109	12.0000
:hhh	chr7:150020012-150020257(+)$1	245	79	83	12.0000
{EEE	chr6:32157447-32157877(-)$1	430	84	88	12.0000
CIII	chr15:100106496-100106788(+)$1	292	38	42	12.0000
peee	chr17:26903718-26903987(-)$1	269	251	255	12.0000
bb[a	chr9:139904698-139905032(-)$1	334	17	21	12.0000
elll	chr9:123631026-123631310(-)$1	284	34	38	12.0000
hhhh	chrX:44732680-44732937(+)$1	257	46	50	12.0000
mccc	chr22:20073322-20073559(+)$1	237	199	203	12.0000
HHHH	chr11:64124699-64124950(+)$1	251	39	43	12.0000
HHHd	chr5:177022803-177023067(+)$1	264	31	35	12.0000
KKDD	chr13:113863753-113864052(+)$1	299	52	56	12.0000
CBBL	chr22:19951906-19952181(+)$1	275	54	58	12.0000
eeee	chr16:85646738-85646977(+)$1	239	59	63	12.0000
:::b	chr1:228284677-228284942(+)$1	265	6	10	12.0000
NNNN	chr11:118926684-118926964(-)$1	280	15	19	12.0000
mmdd	chr9:140260701-140260971(-)$1	270	37	41	12.0000
ee^^	chr1:36789200-36789504(+)$1	304	95	99	12.0000
i333	chr14:90864495-90864743(+)$1	248	70	74	12.0000
c!!c	chr4:1228587-1228828(-)$1	241	112	116	12.0000
D{DD	chr2:130939790-130940064(+)$1	274	6	10	12.0000
CCC=	chr17:76116534-76116818(-)$1	284	3	7	12.0000
eeoo	chr15:66084361-66084613(-)$1	252	96	100	12.0000
HHHH	chrX:47442721-47443001(+)$1	280	13	17	12.0000
EEEE	chr5:132202458-132202720(+)$1	262	21	25	12.0000
:fff	chr17:76793997-76794250(-)$1	253	30	34	12.0000
GGGG	chr6:167369793-167370048(-)$1	255	2	6	12.0000
ffff	chr6:3000043-3000353(+)$1	310	22	26	12.0000
oddd	chr8:29940270-29940491(-)$1	221	111	115	12.0000
eeee	chr20:62152056-62152345(+)$1	289	40	44	12.0000

#DB
...)	chr9:35102953-35103205(-)$1	1	57	61	12.0000
))).	chr2:61764915-61765188(-)$1	1	161	165	12.0000
.(.(	chr10:81930512-81930773(-)$1	1	4	8	12.0000
....	chr8:144678735-144678984(-)$1	1	101	105	12.0000
))).	chr22:41487700-41487993(+)$1	1	107	111	12.0000
((((	chr1:2122255-2122537(-)$1	1	4	8	12.0000
(..(	chr22:42475629-42475906(+)$1	1	16	20	12.0000
))))	chr19:50168527-50168748(-)$1	1	107	111	12.0000
((((	chr7:128502834-128503091(+)$1	1	8	12	12.0000
(((.	chr17:28443826-28444122(+)$1	1	83	87	12.0000
...(	chr11:61583217-61583513(-)$1	1	0	4	12.0000
.)))	chr16:83841505-83841826(+)$1	1	162	166	12.0000
).))	chr19:55918960-55919226(-)$1	1	191	195	12.0000
((.(	chr11:77790701-77790975(-)$1	1	36	40	12.0000
.)))	chr6:149638937-149639220(+)$1	1	154	158	12.0000
))).	chr1:1284341-1284619(-)$1	1	21	25	12.0000
((((	chr4:38666236-38666544(+)$1	1	27	31	12.0000
...(	chr13:114538558-114538799(-)$1	1	53	57	12.0000
(.((	chr21:35287931-35288175(-)$1	1	172	176	12.0000
))((	chr9:33817517-33817782(+)$1	1	87	91	12.0000
..))	chr1:110527466-110527730(+)$1	1	26	30	12.0000
))))	chr6:3157563-3157837(-)$1	1	44	48	12.0000
....	chr2:26256923-26257202(+)$1	1	103	107	12.0000
((((	chr9:131583329-131583598(-)$1	1	4	8	12.0000
(((.	chr17:56406010-56406220(-)$1	1	2	6	12.0000
(((.	chr16:2059504-2059767(-)$1	1	141	145	12.0000
.(((	chr17:27717345-27717620(+)$1	1	34	38	12.0000
(...	chr6:44094974-44095228(-)$1	1	50	54	12.0000
(.((	chr7:150779622-150779883(-)$1	1	1	5	12.0000
))))	chr16:75600209-75600509(+)$1	1	206	210	12.0000
((((	chr19:19739149-19739413(-)$1	1	32	36	12.0000
)(((	chr5:177631506-177631780(+)$1	1	69	73	12.0000
))).	chr4:103748422-103748702(-)$1	1	126	130	12.0000
))))	chr22:20105265-20105523(+)$1	1	44	48	12.0000
.)))	chr2:10952703-10953008(-)$1	1	91	95	12.0000
...(	chr15:52861017-52861288(-)$1	1	110	114	12.0000
(..(	chr19:1883547-1883796(-)$1	1	20	24	12.0000
.)))	chr12:49524979-49525259(-)$1	1	244	248	12.0000
((.(	chr6:26124323-26124609(+)$1	1	219	223	12.0000
).))	chr11:2414878-2415196(+)$1	1	12	16	12.0000
((((	chr9:35731969-35732222(-)$1	1	22	26	12.0000
))))	chr16:619212-619558(+)$1	1	34	38	12.0000
).).	chr6:146135599-146135941(-)$1	1	71	75	12.0000
((((	chr17:76182929-76183198(-)$1	1	215	219	12.0000
.(((	chr12:123464018-123464274(+)$1	1	7	11	12.0000
))))	chr16:29821991-29822261(+)$1	1	124	128	12.0000
(((.	chr7:150779555-150779804(-)$1	1	27	31	12.0000
).))	chr4:2935992-2936267(-)$1	1	216	220	12.0000
.(((	chr10:74856424-74856698(-)$1	1	133	137	12.0000
((.(	chr2:28974800-28975048(+)$1	1	40	44	12.0000
(...	chr5:138629493-138629749(+)$1	1	38	42	12.0000
))).	chr2:85772035-85772325(+)$1	1	114	118	12.0000
((((	chr8:102217326-102217680(-)$1	1	94	98	12.0000
.(.(	chr2:26257002-26257284(+)$1	1	24	28	12.0000
.(((	chr14:50359732-50359973(+)$1	1	89	93	12.0000
.((.	chr9:139743351-139743631(+)$1	1	90	94	12.0000
....	chr17:46653889-46654097(-)$1	1	99	103	12.0000
(..(	chr7:151216139-151216400(-)$1	1	56	60	12.0000
....	chrX:109246147-109246446(+)$1	1	65	69	12.0000
))))	chr15:52121799-52122096(+)$1	1	105	109	12.0000
.(((	chr7:150020012-150020257(+)$1	1	79	83	12.0000
.(((	chr6:32157447-32157877(-)$1	1	84	88	12.0000
((((	chr15:100106496-100106788(+)$1	1	38	42	12.0000
.)))	chr17:26903718-26903987(-)$1	1	251	255	12.0000
((.(	chr9:139904698-139905032(-)$1	1	17	21	12.0000
(...	chr9:123631026-123631310(-)$1	1	34	38	12.0000
((((	chrX:44732680-44732937(+)$1	1	46	50	12.0000
.)))	chr22:20073322-20073559(+)$1	1	199	203	12.0000
((((	chr11:64124699-64124950(+)$1	1	39	43	12.0000
((((	chr5:177022803-177023067(+)$1	1	31	35	12.0000
..((	chr13:113863753-113864052(+)$1	1	52	56	12.0000
(((.	chr22:19951906-19952181(+)$1	1	54	58	12.0000
))))	chr16:85646738-85646977(+)$1	1	59	63	12.0000
...(	chr1:228284677-228284942(+)$1	1	6	10	12.0000
....	chr11:118926684-118926964(-)$1	1	15	19	12.0000
..))	chr9:140260701-140260971(-)$1	1	37	41	12.0000
((..	chr1:36789200-36789504(+)$1	1	95	99	12.0000
)...	chr14:90864495-90864743(+)$1	1	70	74	12.0000
(..(	chr4:1228587-1228828(-)$1	1	112	116	12.0000
(.((	chr2:130939790-130940064(+)$1	1	6	10	12.0000
((((	chr17:76116534-76116818(-)$1	1	3	7	12.0000
((..	chr15:66084361-66084613(-)$1	1	96	100	12.0000
((((	chrX:47442721-47443001(+)$1	1	13	17	12.0000
((((	chr5:132202458-132202720(+)$1	1	21	25	12.0000
.(((	chr17:76793997-76794250(-)$1	1	30	34	12.0000
((((	chr6:167369793-167370048(-)$1	1	2	6	12.0000
))))	chr6:3000043-3000353(+)$1	1	22	26	12.0000
.)))	chr8:29940270-29940491(-)$1	1	111	115	12.0000
))))	chr20:62152056-62152345(+)$1	1	40	44	12.0000

#PSSM
U : 0.89	u : 0.10	
G : 0.87	g : 0.12	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	

#score	1068.0000000000005
#seq	89
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_transcript_m2_run1.nuc.txt

#NT
ggggugugg	chr7:76626786-76627030(+)$1	244	5	14	19.0967
GGGGUGGGG	chr11:66384535-66384816(+)$1	281	90	99	23.3709
GGGGUGGUG	chrM:14241-14447(-)$1	206	103	112	18.7741
GGGGUGGGG	chr19:7708658-7708918(+)$1	260	129	138	23.3709
ggugugggg	chr7:76628212-76628445(+)$1	233	50	59	18.6935
GGGGUGGGG	chr17:56408164-56408404(-)$1	240	184	193	23.3709
ggggugggg	chr2:97560404-97560629(-)$1	225	199	208	23.3709
ugggugggg	chr16:89031299-89031593(-)$1	294	198	207	19.4999
GCGGUGGGG	chr1:155658334-155658602(-)$1	268	1	10	18.6935
GGGGAGGGG	chr1:245026456-245026711(-)$1	255	172	181	19.5806
GGGGUGGGA	chr9:126029888-126030150(-)$1	262	57	66	18.7741
ggggugugg	chr2:97560172-97560412(-)$1	240	10	19	19.0967
ggggagggg	chr15:38776586-38776855(+)$1	269	80	89	19.5806
UGGGUGGGG	chr3:41241368-41241624(+)$1	256	179	188	19.4999
gggcugggg	chr7:65338734-65339005(+)$1	271	109	118	19.9032
GGGAUGGGG	chr11:65192331-65192630(+)$1	299	71	80	19.7419
GGUGUGGGG	chr19:14529791-14530095(-)$1	304	44	53	18.6935
GGGGCGGGG	chr19:18547993-18548247(-)$1	254	65	74	19.0967
GGGGUGGGA	chr11:1995005-1995246(+)$1	241	73	82	18.7741
GGGGAGGGG	chr19:16187678-16187910(+)$1	232	34	43	19.5806
GGGGUGGGG	chr7:5569450-5569692(-)$1	242	44	53	23.3709
gggaugggg	chr12:132401530-132401757(+)$1	227	170	179	19.7419
GGGGUGGGG	chr19:900194-900476(-)$1	282	40	49	23.3709
GGGGAGGGG	chr20:57467262-57467497(+)$1	235	11	20	19.5806
gggguggag	chr11:2412079-2412323(+)$1	244	76	85	18.6935
ggggugggg	chr17:80230765-80231027(-)$1	262	12	21	23.3709
GGGGUGGGU	chr10:74035233-74035520(+)$1	287	275	284	18.6935
GGGCUGGGG	chr16:85685034-85685378(+)$1	344	91	100	19.9032
GGGCUGGGG	chr7:6695692-6695966(+)$1	274	10	19	19.9032
AGGGUGGGG	chr12:12874168-12874423(+)$1	255	98	107	19.1774
GGGGUGGUG	chr5:93904631-93904868(-)$1	237	28	37	18.7741
GGGGUGGGG	chr19:1104347-1104709(+)$1	362	348	357	23.3709
UGGGUGGGG	chr7:100272507-100272787(+)$1	280	147	156	19.4999
GGGGUUGGG	chr12:125398772-125399029(-)$1	257	23	32	18.5322
GGGGUGGGG	chr19:5094375-5094684(+)$1	309	280	289	23.3709
GGGGUGCGG	chr6:86351502-86351770(-)$1	268	104	113	18.8548
AGGGUGGGG	chr17:79884902-79885166(-)$1	264	96	105	19.1774
UGGGUGGGG	chrX:152956423-152956741(+)$1	318	259	268	19.4999
GUGGUGGGG	chr19:1410217-1410468(+)$1	251	73	82	18.7741
GGGGAGGGG	chr17:58469029-58469302(-)$1	273	66	75	19.5806
GGGCUGGGG	chr2:97535351-97535657(-)$1	306	146	155	19.9032
GGGGAGGGG	chr19:16187710-16187985(+)$1	275	2	11	19.5806
GGGGUGGGG	chr6:29600544-29600832(-)$1	288	18	27	23.3709
GGGGUGGGG	chr19:2271149-2271432(+)$1	283	144	153	23.3709
GGGGUGGGG	chr7:106809847-106810093(+)$1	246	193	202	23.3709
GGGCUGGGG	chr19:879204-879459(-)$1	255	23	32	19.9032
UGGGUGGGG	chr2:97559872-97560109(-)$1	237	68	77	19.4999
GGGGUGGGG	chr1:1181410-1181650(-)$1	240	100	109	23.3709
gggcugggg	chr1:1821913-1822164(-)$1	251	60	69	19.9032
GGGGUGGGG	chr20:60735914-60736205(+)$1	291	107	116	23.3709
GGGAUGGGG	chr17:56408723-56409006(-)$1	283	85	94	19.7419
GGGGAGGGG	chr20:57467335-57467628(+)$1	293	245	254	19.5806
GUGGUGGGG	chr1:1000581-1000850(+)$1	269	9	18	18.7741
UGGGUGGGG	chr19:862577-862835(+)$1	258	88	97	19.4999
GGGGUGUGG	chr16:85647378-85647614(+)$1	236	80	89	19.0967
ggggugggg	chr11:2400397-2400670(+)$1	273	54	63	23.3709
GGGGUGGGG	chr11:120356691-120356962(+)$1	271	81	90	23.3709
GGGCUGGGG	chr4:1873217-1873531(+)$1	314	96	105	19.9032
GGGAUGGGG	chr19:4065991-4066241(-)$1	250	32	41	19.7419
gggaugggg	chr12:132401654-132401930(+)$1	276	4	13	19.7419
GGGGUGGGG	chr7:158656683-158656960(+)$1	277	48	57	23.3709

#otherMatches

#Struct PSSM
::::::::a	chr2:242838749-242838994(+)$1	245	3	12	19.0967
:::::::::	chr7:76626786-76627030(+)$1	244	5	14	19.0967
hhhhhh]bb	chr11:66384535-66384816(+)$1	281	90	99	23.3709
b]dddd]ee	chrM:14241-14447(-)$1	206	103	112	18.7741
7dddd333e	chr19:7708658-7708918(+)$1	260	129	138	23.3709
[bb[bb[dd	chr7:76628212-76628445(+)$1	233	50	59	18.6935
d]a]eeeee	chr17:56408164-56408404(-)$1	240	184	193	23.3709
::A}A}A}A	chr2:97560404-97560629(-)$1	225	199	208	23.3709
~JJJJJJJJ	chr16:89031299-89031593(-)$1	294	198	207	19.4999
CCCBB{BBK	chr1:155658334-155658602(-)$1	268	1	10	18.6935
=="""dddd	chr1:245026456-245026711(-)$1	255	172	181	19.5806
:::::::::	chr9:126029888-126030150(-)$1	262	57	66	18.7741
:::::::::	chr2:97560172-97560412(-)$1	240	10	19	19.0967
:::::::::	chr15:38776586-38776855(+)$1	269	80	89	19.5806
a]ccc]ddd	chr3:41241368-41241624(+)$1	256	179	188	19.4999
[dddd[ggg	chr7:65338734-65339005(+)$1	271	109	118	19.9032
eeeee]bb:	chr11:65192331-65192630(+)$1	299	71	80	19.7419
]bb:::::g	chr19:14529791-14530095(-)$1	304	44	53	18.6935
[ddddllld	chr19:18547993-18548247(-)$1	254	65	74	19.0967
::::HHHHH	chr11:1995005-1995246(+)$1	241	73	82	18.7741
ddeeeee[a	chr19:16187678-16187910(+)$1	232	34	43	19.5806
b!!ddddnn	chr7:5569450-5569692(-)$1	242	44	53	23.3709
ddd$$$$$f	chr12:132401530-132401757(+)$1	227	170	179	19.7419
dd[hhhhhh	chr19:900194-900476(-)$1	282	40	49	23.3709
::a!!a[bb	chr20:57467262-57467497(+)$1	235	11	20	19.5806
d::bbmmmm	chr11:2412079-2412323(+)$1	244	76	85	18.6935
+++++++++	chr17:80230765-80231027(-)$1	262	12	21	23.3709
GGGGGGG::	chr10:74035233-74035520(+)$1	287	275	284	18.6935
IIIIIIIIK	chr16:85685034-85685378(+)$1	344	91	100	19.9032
!!ccc[ccc	chr7:6695692-6695966(+)$1	274	10	19	19.9032
eeegggggg	chr12:12874168-12874423(+)$1	255	98	107	19.1774
::a[dddd$	chr5:93904631-93904868(-)$1	237	28	37	18.7741
B}AFFFFFF	chr19:1104347-1104709(+)$1	362	348	357	23.3709
4dddd::==	chr7:100272507-100272787(+)$1	280	147	156	19.4999
eeeee::::	chr12:125398772-125399029(-)$1	257	23	32	18.5322
vvvvvvvvv	chr19:5094375-5094684(+)$1	309	280	289	23.3709
fGGGGGGG{	chr6:86351502-86351770(-)$1	268	104	113	18.8548
#dddd[fff	chr17:79884902-79885166(-)$1	264	96	105	19.1774
YYEEEEE::	chrX:152956423-152956741(+)$1	318	259	268	19.4999
cEEEEEYYH	chr19:1410217-1410468(+)$1	251	73	82	18.7741
:::::::::	chr17:58469029-58469302(-)$1	273	66	75	19.5806
==bb[dddd	chr2:97535351-97535657(-)$1	306	146	155	19.9032
:bb!!a[cc	chr19:16187710-16187985(+)$1	275	2	11	19.5806
!bb[hhhhh	chr6:29600544-29600832(-)$1	288	18	27	23.3709
=====:ccc	chr19:2271149-2271432(+)$1	283	144	153	23.3709
::a[eeeee	chr7:106809847-106810093(+)$1	246	193	202	23.3709
]dddd]a::	chr19:879204-879459(-)$1	255	23	32	19.9032
fffff[a[d	chr2:97559872-97560109(-)$1	237	68	77	19.4999
eeeee!!ee	chr1:1181410-1181650(-)$1	240	100	109	23.3709
:::ccc[a[	chr1:1821913-1822164(-)$1	251	60	69	19.9032
EEEEE}BBF	chr20:60735914-60736205(+)$1	291	107	116	23.3709
ee]bb]ggg	chr17:56408723-56409006(-)$1	283	85	94	19.7419
uuuuuuuuu	chr20:57467335-57467628(+)$1	293	245	254	19.5806
[a"""ccc[	chr1:1000581-1000850(+)$1	269	9	18	18.7741
ffffflllf	chr19:862577-862835(+)$1	258	88	97	19.4999
=========	chr16:85647378-85647614(+)$1	236	80	89	19.0967
bbqqqqqqq	chr11:2400397-2400670(+)$1	273	54	63	23.3709
errrrrrrr	chr11:120356691-120356962(+)$1	271	81	90	23.3709
[dddd!!dd	chr4:1873217-1873531(+)$1	314	96	105	19.9032
nnnffffff	chr19:4065991-4066241(-)$1	250	32	41	19.7419
:::::::hh	chr12:132401654-132401930(+)$1	276	4	13	19.7419
fffffbbee	chr7:158656683-158656960(+)$1	277	48	57	23.3709

#DB
........(	chr2:242838749-242838994(+)$1	1	3	12	19.0967
.........	chr7:76626786-76627030(+)$1	1	5	14	19.0967
)))))).))	chr11:66384535-66384816(+)$1	1	90	99	23.3709
).)))).))	chrM:14241-14447(-)$1	1	103	112	18.7741
.))))...)	chr19:7708658-7708918(+)$1	1	129	138	23.3709
.((.((.((	chr7:76628212-76628445(+)$1	1	50	59	18.6935
).).)))))	chr17:56408164-56408404(-)$1	1	184	193	23.3709
..).).).)	chr2:97560404-97560629(-)$1	1	199	208	23.3709
.))))))))	chr16:89031299-89031593(-)$1	1	198	207	19.4999
(((((.((.	chr1:155658334-155658602(-)$1	1	1	10	18.6935
((...((((	chr1:245026456-245026711(-)$1	1	172	181	19.5806
.........	chr9:126029888-126030150(-)$1	1	57	66	18.7741
.........	chr2:97560172-97560412(-)$1	1	10	19	19.0967
.........	chr15:38776586-38776855(+)$1	1	80	89	19.5806
).))).)))	chr3:41241368-41241624(+)$1	1	179	188	19.4999
.((((.(((	chr7:65338734-65339005(+)$1	1	109	118	19.9032
))))).)).	chr11:65192331-65192630(+)$1	1	71	80	19.7419
.)).....(	chr19:14529791-14530095(-)$1	1	44	53	18.6935
.((((...)	chr19:18547993-18548247(-)$1	1	65	74	19.0967
....(((((	chr11:1995005-1995246(+)$1	1	73	82	18.7741
))(((((.(	chr19:16187678-16187910(+)$1	1	34	43	19.5806
(..((((..	chr7:5569450-5569692(-)$1	1	44	53	23.3709
(((.....(	chr12:132401530-132401757(+)$1	1	170	179	19.7419
((.((((((	chr19:900194-900476(-)$1	1	40	49	23.3709
..(..(.((	chr20:57467262-57467497(+)$1	1	11	20	19.5806
)..((....	chr11:2412079-2412323(+)$1	1	76	85	18.6935
.........	chr17:80230765-80231027(-)$1	1	12	21	23.3709
)))))))..	chr10:74035233-74035520(+)$1	1	275	284	18.6935
((((((((.	chr16:85685034-85685378(+)$1	1	91	100	19.9032
..(((.(((	chr7:6695692-6695966(+)$1	1	10	19	19.9032
)))))))))	chr12:12874168-12874423(+)$1	1	98	107	19.1774
..(.((((.	chr5:93904631-93904868(-)$1	1	28	37	18.7741
).)))))))	chr19:1104347-1104709(+)$1	1	348	357	23.3709
.))))..((	chr7:100272507-100272787(+)$1	1	147	156	19.4999
)))))....	chr12:125398772-125399029(-)$1	1	23	32	18.5322
.........	chr19:5094375-5094684(+)$1	1	280	289	23.3709
)(((((((.	chr6:86351502-86351770(-)$1	1	104	113	18.8548
.((((.(((	chr17:79884902-79885166(-)$1	1	96	105	19.1774
..)))))..	chrX:152956423-152956741(+)$1	1	259	268	19.4999
))))))..)	chr19:1410217-1410468(+)$1	1	73	82	18.7741
.........	chr17:58469029-58469302(-)$1	1	66	75	19.5806
))((.((((	chr2:97535351-97535657(-)$1	1	146	155	19.9032
.((..(.((	chr19:16187710-16187985(+)$1	1	2	11	19.5806
.((.(((((	chr6:29600544-29600832(-)$1	1	18	27	23.3709
))))).(((	chr19:2271149-2271432(+)$1	1	144	153	23.3709
..(.(((((	chr7:106809847-106810093(+)$1	1	193	202	23.3709
.)))).)..	chr19:879204-879459(-)$1	1	23	32	19.9032
(((((.(.(	chr2:97559872-97560109(-)$1	1	68	77	19.4999
(((((..((	chr1:1181410-1181650(-)$1	1	100	109	23.3709
...(((.(.	chr1:1821913-1822164(-)$1	1	60	69	19.9032
))))).)))	chr20:60735914-60736205(+)$1	1	107	116	23.3709
)).)).)))	chr17:56408723-56409006(-)$1	1	85	94	19.7419
.........	chr20:57467335-57467628(+)$1	1	245	254	19.5806
.(...(((.	chr1:1000581-1000850(+)$1	1	9	18	18.7741
(((((...)	chr19:862577-862835(+)$1	1	88	97	19.4999
)))))))((	chr16:85647378-85647614(+)$1	1	80	89	19.0967
((.......	chr11:2400397-2400670(+)$1	1	54	63	23.3709
(........	chr11:120356691-120356962(+)$1	1	81	90	23.3709
.((((..((	chr4:1873217-1873531(+)$1	1	96	105	19.9032
...))))))	chr19:4065991-4066241(-)$1	1	32	41	19.7419
.......((	chr12:132401654-132401930(+)$1	1	4	13	19.7419
)))))))((	chr7:158656683-158656960(+)$1	1	48	57	23.3709

#PSSM
G : 0.66	g : 0.20	U : 0.08	A : 0.03	u : 0.01	
G : 0.72	g : 0.22	U : 0.03	C : 0.01	
G : 0.75	g : 0.20	u : 0.01	U : 0.01	
G : 0.64	g : 0.16	C : 0.08	A : 0.04	c : 0.03	a : 0.03	
U : 0.66	u : 0.20	A : 0.09	a : 0.01	C : 0.01	
G : 0.75	g : 0.22	U : 0.01	
G : 0.74	g : 0.17	u : 0.04	C : 0.01	U : 0.01	
G : 0.74	g : 0.20	U : 0.03	a : 0.01	
G : 0.72	g : 0.22	A : 0.03	U : 0.01	

#score	1266.7419354838696
#seq	62
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_CDS_m3_run2.nuc.txt

#NT
GCUGCUGGGCAAAGUCACCAUCGCACAGGGCGGUGUCCUGCCCAACAUUCAGGCCGUGCUACUGCCCAAAAAGACUGAGAGCCACCA	chr6:27101102-27101336(+)$1	234	35	122	239.7500
GCUGCUUGGUAAAGUUACCAUCGCUCAGGGCGGUGUUCUGCCUAACAUCCAGGCCGUACUGCUCCCCAAGAAGACUGAGAGCCACCA	chr6:27860421-27860671(-)$1	250	31	118	217.2500
GCUGCUGGGCAAAGUCACCAUCGCACAGGGCGGUGUCCUGCCCAACAUUCAGGCCGUGCUACUGCCCAAAAAGACUGAGAGCCACCA	chr6:27101085-27101301(+)$1	216	52	139	239.7500

#otherMatches

#Struct PSSM
:::::IIIIIIIII{A:eeeeeooooooeeeee::::dddd!!ccchhhhhhhh####eeeeedddd+++++++++++++cccpppp	chr6:27776274-27776518(+)$1	244	0	87	229.7500
ddd]bbeeeee!!a[dddd[bboooooobb]dddd]a]eeeee::::::::DDDDCCCNNNNNDDDD::::::ccc!!dddd!!ggg	chr6:27101102-27101336(+)$1	234	35	122	239.7500
ddd]cccddddmmmmdddd:::FFFFFFeeeeemmmmeeeee:::::::ccc[bb[dddd"""ccc!!bb$$$$$bbqqqqqqqqbb	chr6:27860421-27860671(-)$1	250	31	118	217.2500
HHHH:ffffff!!a[dddd[bboooooobb]dddd]a]ffffff:::::dddd"""dddd!!eeeee+++++++++++++cccpppp	chr6:27101085-27101301(+)$1	216	52	139	239.7500

#DB
.....(((((((((.(.(((((......)))))....((((..(((((((((((....(((((((((.............(((....	chr6:27776274-27776518(+)$1	1	0	87	229.7500
))).))(((((..(.((((.((......)).)))).).)))))........))))(((.....((((......(((..((((..(((	chr6:27101102-27101336(+)$1	1	35	122	239.7500
))).)))((((....))))...(((((((((((....))))).......(((.((.((((...(((..((.....((........))	chr6:27860421-27860671(-)$1	1	31	118	217.2500
((((.((((((..(.((((.((......)).)))).).)))))).....((((...((((..(((((.............(((....	chr6:27101085-27101301(+)$1	1	52	139	239.7500

#PSSM
G : 1.00	
C : 1.00	
U : 1.00	
G : 0.75	U : 0.25	
C : 1.00	
U : 1.00	
G : 0.75	U : 0.25	
G : 1.00	
G : 1.00	
C : 0.75	U : 0.25	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 0.75	U : 0.25	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 0.75	U : 0.25	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 0.75	U : 0.25	
G : 1.00	
G : 1.00	
U : 0.75	C : 0.25	
G : 1.00	
U : 1.00	
C : 0.75	U : 0.25	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 0.75	U : 0.25	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 0.75	A : 0.25	
C : 1.00	
U : 1.00	
A : 0.75	G : 0.25	
C : 1.00	
U : 1.00	
G : 0.75	C : 0.25	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 0.75	C : 0.25	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	

#score	926.5
#seq	4
#width	87
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_CDS_m3_run2.nuc.txt

#NT
CCCUGUGCU	chr22:50018148-50018375(-)$1	227	201	210	13.3793
CUCUUACCU	chrX:153693224-153693519(+)$1	295	194	203	10.9655
CCCUAACCU	chr20:55982467-55982711(+)$1	244	103	112	12.8620
GCCUUUCCU	chr19:39966535-39966831(+)$1	296	60	69	14.2413
CCCUCUCCA	chr1:109823553-109823800(-)$1	247	119	128	12.0862
cccuuuccc	chr16:30078122-30078339(+)$1	217	0	9	14.4137
CCCUGGCCU	chr20:32246208-32246522(-)$1	314	126	135	13.2931
CCCUUUCCC	chr17:27074063-27074347(+)$1	284	119	128	14.4137
CCCUUUUAU	chr20:47711146-47711387(+)$1	241	8	17	11.4827
GCCUCUCCU	chr19:44273055-44273327(-)$1	272	57	66	12.1724
CCCUUUCGU	chr9:140260958-140261229(-)$1	271	43	52	13.8965
CCCUUUCUU	chr7:127731728-127731996(+)$1	268	136	145	14.0689
CCCUCUGCU	chr19:45555885-45556176(+)$1	291	247	256	13.3793
CCCUAACCU	chr4:2909317-2909590(+)$1	273	193	202	12.8620
CCCAUUUCU	chr1:150522937-150523202(+)$1	265	133	142	12.3448
UCCUUUCCU	chrX:48673642-48673912(+)$1	270	111	120	13.9827
CACUGUCCU	chr16:89789526-89789799(+)$1	273	240	249	11.8275
CCCUCUCCA	chr8:48744335-48744618(-)$1	283	121	130	12.0862
ACCCUUCCU	chr1:109823744-109823987(-)$1	243	0	9	11.0517
CCCGUUUCU	chr17:7123938-7124188(+)$1	250	197	206	12.3448
CCCCUCCCU	chr11:62549992-62550275(+)$1	283	142	151	12.6034
CCCUGUCCC	chr15:75650856-75651120(-)$1	264	148	157	12.3448
CCUUCUCCU	chr8:41805286-41805550(-)$1	264	10	19	11.9137
CCCUUUGCU	chr16:50342075-50342343(+)$1	268	37	46	15.4482
CCCGAUCCU	chr8:144520096-144520402(-)$1	306	56	65	12.1724
GCCUUGCCU	chr22:32003766-32004050(+)$1	284	61	70	11.2241
CCCUUUCCU	chr12:57910855-57911114(-)$1	259	129	138	18.3793
CCCCUUUCU	chr11:64535630-64535884(-)$1	254	90	99	13.0344
CCCUUUUUU	chr1:47728634-47728937(-)$1	303	70	79	11.6551
CCCCUUCCU	chr20:3914704-3915026(-)$1	322	287	296	15.4482
CCCUUGUCU	chrX:153225733-153226023(-)$1	290	137	146	12.9482
CUCUUACCU	chr17:61886776-61887060(+)$1	284	193	202	10.9655
GCCUCUCCU	chr16:1363846-1364140(+)$1	294	136	145	12.1724
CCCUUUGCU	chr1:45221561-45221849(+)$1	288	1	10	15.4482
CCCUUUUCU	chr7:157009403-157009690(+)$1	287	11	20	15.9655
CCCAUUUCU	chr5:140041755-140042013(+)$1	258	109	118	12.3448
CCCUUCCCU	chr16:1503784-1504026(-)$1	242	24	33	15.5344
CCCUUGUCU	chr1:35643488-35643738(-)$1	250	61	70	12.9482
CCCUUUGCU	chr16:30724386-30724649(+)$1	263	84	93	15.4482
CCCCUCCCU	chr16:85694608-85694889(+)$1	281	0	9	12.6034
CCCUGCCCU	chr17:27074892-27075158(+)$1	266	175	184	13.4655
CCCUCUCCC	chr17:42397702-42397923(-)$1	221	95	104	12.3448
CCAUCUCCU	chr7:45144160-45144464(-)$1	304	253	262	11.7413
CCUUGUCCU	chr22:50636355-50636619(+)$1	264	130	139	11.9137
CCCUGACCU	chr19:10270332-10270589(-)$1	257	35	44	13.3793
CCCUAUUCU	chr6:33373799-33374099(+)$1	300	3	12	13.3793
CCCUGUGCU	chr16:89788792-89789060(+)$1	268	89	98	13.3793
CCCUCACCU	chr9:130883428-130883712(-)$1	284	14	23	13.3793
CCCCUCCCU	chr14:105225591-105225871(+)$1	280	151	160	12.6034
CCCUGUCCC	chr16:448829-449109(+)$1	280	22	31	12.3448
CCCUUUUUU	chr13:39621063-39621305(+)$1	242	59	68	11.6551
CCCUCCCCU	chr1:26607099-26607377(+)$1	278	28	37	13.4655
CCUCUUCCU	chr1:182821253-182821505(+)$1	252	195	204	11.0517
CCCCUUCCU	chr1:153948254-153948536(-)$1	282	115	124	15.4482
CACUUUUCU	chr1:27105410-27105647(+)$1	237	60	69	11.4827
CCCUGUCCU	chr10:73581669-73581922(-)$1	253	78	87	16.3103
CCCCUCCCU	chr19:1650144-1650448(-)$1	304	114	123	12.6034

#otherMatches

#Struct PSSM
caiiiiiii	chr16:89976801-89977134(+)$1	333	290	299	12.4310
HHHHZZZEE	chr22:50018148-50018375(-)$1	227	201	210	13.3793
JJJJJJJYY	chrX:153693224-153693519(+)$1	295	194	203	10.9655
$$$$$ccc[	chr20:55982467-55982711(+)$1	244	103	112	12.8620
eeee::GGG	chr19:39966535-39966831(+)$1	296	60	69	14.2413
4444dddd]	chr1:109823553-109823800(-)$1	247	119	128	12.0862
:::::::::	chr16:30078122-30078339(+)$1	217	0	9	14.4137
=========	chr20:32246208-32246522(-)$1	314	126	135	13.2931
%%%ddddao	chr17:27074063-27074347(+)$1	284	119	128	14.4137
leeeee:::	chr20:47711146-47711387(+)$1	241	8	17	11.4827
DDDDD{HHH	chr19:44273055-44273327(-)$1	272	57	66	12.1724
EDDDDKKFF	chr9:140260958-140261229(-)$1	271	43	52	13.8965
^^^^^^^^^	chr7:127731728-127731996(+)$1	268	136	145	14.0689
EEYYBB}DD	chr19:45555885-45556176(+)$1	291	247	256	13.3793
dd::::DDD	chr4:2909317-2909590(+)$1	273	193	202	12.8620
dddd!!eee	chr1:150522937-150523202(+)$1	265	133	142	12.3448
oooooobb]	chrX:48673642-48673912(+)$1	270	111	120	13.9827
flllfffff	chr16:89789526-89789799(+)$1	273	240	249	11.8275
FFFFF:::d	chr8:48744335-48744618(-)$1	283	121	130	12.0862
::::JJJJJ	chr1:109823744-109823987(-)$1	243	0	9	11.0517
c!!gggggg	chr17:7123938-7124188(+)$1	250	197	206	12.3448
^^^^^^^^^	chr11:62549992-62550275(+)$1	283	142	151	12.6034
::ggggggg	chr15:75650856-75651120(-)$1	264	148	157	12.3448
DDDDKKAMM	chr8:41805286-41805550(-)$1	264	10	19	11.9137
fffffffff	chr16:50342075-50342343(+)$1	268	37	46	15.4482
ccc22gggg	chr8:144520096-144520402(-)$1	306	56	65	12.1724
cccdddd]d	chr22:32003766-32004050(+)$1	284	61	70	11.2241
FEEEEEYYH	chr12:57910855-57911114(-)$1	259	129	138	18.3793
22ccc::::	chr11:64535630-64535884(-)$1	254	90	99	13.0344
eeee]dddd	chr1:47728634-47728937(-)$1	303	70	79	11.6551
FJJJJJJJJ	chr20:3914704-3915026(-)$1	322	287	296	15.4482
pppppccc:	chrX:153225733-153226023(-)$1	290	137	146	12.9482
FFF}JJJJJ	chr17:61886776-61887060(+)$1	284	193	202	10.9655
KIIIIIIII	chr16:1363846-1364140(+)$1	294	136	145	12.1724
BBLLLDDDD	chr1:45221561-45221849(+)$1	288	1	10	15.4482
CDDDD{EEE	chr7:157009403-157009690(+)$1	287	11	20	15.9655
eee^^^^^^	chr5:140041755-140042013(+)$1	258	109	118	12.3448
:::CCCDDD	chr16:1503784-1504026(-)$1	242	24	33	15.5344
:::::ccc#	chr1:35643488-35643738(-)$1	250	61	70	12.9482
tttttdddd	chr16:30724386-30724649(+)$1	263	84	93	15.4482
:::bb[eee	chr16:85694608-85694889(+)$1	281	0	9	12.6034
^^^^^^^^^	chr17:27074892-27075158(+)$1	266	175	184	13.4655
fffff]ddd	chr17:42397702-42397923(-)$1	221	95	104	12.3448
]dddd]bb3	chr7:45144160-45144464(-)$1	304	253	262	11.7413
c!!eeeee!	chr22:50636355-50636619(+)$1	264	130	139	11.9137
BBADDDDFF	chr19:10270332-10270589(-)$1	257	35	44	13.3793
EEE::::::	chr6:33373799-33374099(+)$1	300	3	12	13.3793
bddddmmmm	chr16:89788792-89789060(+)$1	268	89	98	13.3793
::::::ccc	chr9:130883428-130883712(-)$1	284	14	23	13.3793
zzzzzzzzz	chr14:105225591-105225871(+)$1	280	151	160	12.6034
:BBKKDDDD	chr16:448829-449109(+)$1	280	22	31	12.3448
dbb888888	chr13:39621063-39621305(+)$1	242	59	68	11.6551
pdddd:::c	chr1:26607099-26607377(+)$1	278	28	37	13.4655
nnnnnffff	chr1:182821253-182821505(+)$1	252	195	204	11.0517
ff:::::::	chr1:153948254-153948536(-)$1	282	115	124	15.4482
EEEEE{DDD	chr1:27105410-27105647(+)$1	237	60	69	11.4827
ddd[ddddp	chr10:73581669-73581922(-)$1	253	78	87	16.3103
bb333eeee	chr19:1650144-1650448(-)$1	304	114	123	12.6034

#DB
)))))))))	chr16:89976801-89977134(+)$1	1	290	299	12.4310
))))...))	chr22:50018148-50018375(-)$1	1	201	210	13.3793
)))))))..	chrX:153693224-153693519(+)$1	1	194	203	10.9655
.....(((.	chr20:55982467-55982711(+)$1	1	103	112	12.8620
))))..(((	chr19:39966535-39966831(+)$1	1	60	69	14.2413
....)))).	chr1:109823553-109823800(-)$1	1	119	128	12.0862
.........	chr16:30078122-30078339(+)$1	1	0	9	14.4137
)))))))))	chr20:32246208-32246522(-)$1	1	126	135	13.2931
...(((((.	chr17:27074063-27074347(+)$1	1	119	128	14.4137
.)))))...	chr20:47711146-47711387(+)$1	1	8	17	11.4827
(((((.(((	chr19:44273055-44273327(-)$1	1	57	66	12.1724
(((((..((	chr9:140260958-140261229(-)$1	1	43	52	13.8965
.........	chr7:127731728-127731996(+)$1	1	136	145	14.0689
))..)).))	chr19:45555885-45556176(+)$1	1	247	256	13.3793
))....(((	chr4:2909317-2909590(+)$1	1	193	202	12.8620
((((..(((	chr1:150522937-150523202(+)$1	1	133	142	12.3448
......)).	chrX:48673642-48673912(+)$1	1	111	120	13.9827
(...)))))	chr16:89789526-89789799(+)$1	1	240	249	11.8275
(((((...(	chr8:48744335-48744618(-)$1	1	121	130	12.0862
....(((((	chr1:109823744-109823987(-)$1	1	0	9	11.0517
(..((((((	chr17:7123938-7124188(+)$1	1	197	206	12.3448
.........	chr11:62549992-62550275(+)$1	1	142	151	12.6034
..(((((((	chr15:75650856-75651120(-)$1	1	148	157	12.3448
((((..(..	chr8:41805286-41805550(-)$1	1	10	19	11.9137
(((((((((	chr16:50342075-50342343(+)$1	1	37	46	15.4482
)))..))))	chr8:144520096-144520402(-)$1	1	56	65	12.1724
))))))).)	chr22:32003766-32004050(+)$1	1	61	70	11.2241
))))))..)	chr12:57910855-57911114(-)$1	1	129	138	18.3793
..)))....	chr11:64535630-64535884(-)$1	1	90	99	13.0344
)))).))))	chr1:47728634-47728937(-)$1	1	70	79	11.6551
)))))))))	chr20:3914704-3915026(-)$1	1	287	296	15.4482
.....))).	chrX:153225733-153226023(-)$1	1	137	146	12.9482
))).)))))	chr17:61886776-61887060(+)$1	1	193	202	10.9655
.((((((((	chr16:1363846-1364140(+)$1	1	136	145	12.1724
((...((((	chr1:45221561-45221849(+)$1	1	1	10	15.4482
(((((.(((	chr7:157009403-157009690(+)$1	1	11	20	15.9655
(((......	chr5:140041755-140042013(+)$1	1	109	118	12.3448
...((((((	chr16:1503784-1504026(-)$1	1	24	33	15.5344
.....(((.	chr1:35643488-35643738(-)$1	1	61	70	12.9482
.....))))	chr16:30724386-30724649(+)$1	1	84	93	15.4482
...((.(((	chr16:85694608-85694889(+)$1	1	0	9	12.6034
.........	chr17:27074892-27075158(+)$1	1	175	184	13.4655
))))).)))	chr17:42397702-42397923(-)$1	1	95	104	12.3448
.)))).)).	chr7:45144160-45144464(-)$1	1	253	262	11.7413
(..(((((.	chr22:50636355-50636619(+)$1	1	130	139	11.9137
(((((((((	chr19:10270332-10270589(-)$1	1	35	44	13.3793
(((......	chr6:33373799-33374099(+)$1	1	3	12	13.3793
(((((....	chr16:89788792-89789060(+)$1	1	89	98	13.3793
......(((	chr9:130883428-130883712(-)$1	1	14	23	13.3793
.........	chr14:105225591-105225871(+)$1	1	151	160	12.6034
.((..((((	chr16:448829-449109(+)$1	1	22	31	12.3448
)))......	chr13:39621063-39621305(+)$1	1	59	68	11.6551
.))))...(	chr1:26607099-26607377(+)$1	1	28	37	13.4655
.....))))	chr1:182821253-182821505(+)$1	1	195	204	11.0517
)).......	chr1:153948254-153948536(-)$1	1	115	124	15.4482
(((((.(((	chr1:27105410-27105647(+)$1	1	60	69	11.4827
(((.((((.	chr10:73581669-73581922(-)$1	1	78	87	16.3103
))...))))	chr19:1650144-1650448(-)$1	1	114	123	12.6034

#PSSM
C : 0.87	G : 0.06	c : 0.01	U : 0.01	A : 0.01	
C : 0.91	U : 0.03	A : 0.03	c : 0.01	
C : 0.91	U : 0.05	c : 0.01	A : 0.01	
U : 0.74	C : 0.17	A : 0.03	G : 0.03	u : 0.01	
U : 0.56	G : 0.17	C : 0.17	A : 0.06	u : 0.01	
U : 0.67	C : 0.12	A : 0.10	G : 0.08	u : 0.01	
C : 0.67	U : 0.20	G : 0.10	c : 0.01	
C : 0.89	U : 0.05	c : 0.01	A : 0.01	G : 0.01	
U : 0.87	C : 0.06	A : 0.03	c : 0.01	

#score	760.1379310344828
#seq	58
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_CDS_m2_run1.nuc.txt

#NT
UCCCCGUGCUGACUGUGGAAGUGUAUUUAUACCAAGAUGGAGAUCUUGACUUCUUGAAUAUAUCUGGACUGGUAAAAUCUUGAUGAGGCUCAUAAAAUGAGUUUGGGAAUUGUGUAUAGCUGAUUUUUUGUGGGAAACUGUUUACUUCAUUCAAAGGUUCUUGAGACUCUUGAUAUUUCUGUCUUCUCCUUGUGCUUUCCUAUGGAAAAAAUACAUAUAUAGUUUAGUUUGUUAGACGUGAGUUAUCCAAGUAUUUAUUUUGUGUAGUGUGUAAGAAUGCUAAA	chr2:58386386-58386698(-)$1	312	16	300	379.5000

#otherMatches

#Struct PSSM
EEE{EEEEEKKHHHHHHHH{BB:::CCC{CCC{CCCEEEEE{EEEEE::::ffffffmmmmffffff::::::::::::ddddooooooddddEEEEE}EEEEE}CCCZZZCCCZZZCCCdddd[cccbbnnnnnbb]cccdddd::FFFFFFddddmmmmdddd:eeeee&&&&&&&dddd"""ddddoooooodddd22dddd4444eeeee:::::FFFFFF}BBHHHHHHHH______EEEEEEEEEEYYGGGGGGG:::cccgggggggnnnnnggggg	chr1:247322888-247323221(-)$1	333	30	314	379.5000
ppppppccc]dddd22eeeee:FFFFFF{CCCffffffmmmmffffff:::bb!!bb"""ddddoooooodddd333bb22bb::A{CCCJJJJJJJJJJJJDDDD===========%%%%%%==============!!bb++++++++++++dddd$$$$$eeeeevvvvvvvvvvvvveeeee22dddd22bb==============55555===========:::::::::cccmmmmccc::DDDDYYJJJJJJJJJJJJ}CCC}ACCC}FFFFFF::::	chr2:58386386-58386698(-)$1	312	16	300	379.5000

#DB
(((.(((((..((((((((.((...(((.(((.((((((((.(((((....((((((....))))))............((((......))))))))).))))).)))...)))...)))((((.(((((.....)).)))))))..((((((((((....)))).(((((.......((((...((((......))))..))))....))))).....)))))).))))))))))......))))))))))..)))))))...((((((((((.....)))))	chr1:247322888-247323221(-)$1	1	30	314	379.5000
......))).))))..))))).((((((.(((((((((....))))))...((..((...((((......))))...))..))..(.((((((((((((((((((((((((((((((......((((((((((((((..((............((((.....(((((.............)))))..))))..)))))))))))))))).....))))))))))).........(((....)))..))))..)))))))))))).))).)))).))))))....	chr2:58386386-58386698(-)$1	1	16	300	379.5000

#PSSM
A : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
C : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	

#score	759.0
#seq	2
#width	284
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_transcript_m2_run2.nuc.txt

#NT
CUGGGCGAGUGCGGCCCGGGGCUCGGGGGC	chr20:61557300-61557598(-)$1	298	161	191	18.4259
CCGGGCCGGUGCGGCCUGGGGCCCGCUCGC	chr2:20549951-20550293(-)$1	342	64	94	14.9074
CGGCGGGGGUGGGGAACCCGCGCAGGGGUC	chr1:167191008-167191256(+)$1	248	11	41	14.8148
GGCAGCCGGUGCGGCGGGGUCGCCACGGCC	chr1:90308912-90309166(+)$1	254	112	142	17.5925
cgggguggguggggacugcgagcgaguggg	chr1:155947805-155948094(-)$1	289	79	109	19.1666
gcggccgcggcggggccuggggcuuggggc	chr11:3013163-3013460(-)$1	297	145	175	15.1851
UCGUGCGGUUGCGGGGGUGGGGCGGCGGCG	chr16:2564419-2564660(+)$1	241	20	50	19.9074
gggggcaggagcgggggCCUCGGUGGGGGU	chr19:56632061-56632317(-)$1	256	85	115	21.2037
ggcggcggcgccggcagccgggacgcgcgg	chr19:42788308-42788565(+)$1	257	39	69	15.0925
CCGGGCGGGCGGGGAGGCCGAGGCCCGGGG	chr3:149688199-149688473(-)$1	274	102	132	25.7407
cugggccggggcgggggcgcgggAAGGUCG	chr20:62526647-62526945(+)$1	298	199	229	14.9074
GCCGUGAGGGGCGGACGGGGGGCUUCGGGG	chr16:89556017-89556290(-)$1	273	118	148	20.1851
ggggugcggggugcggggcgcggggagggg	chr9:136223066-136223330(-)$1	264	91	121	15.5555
CCGGGAGUGAGCGGAGGGCGGGGGCCGGGA	chr13:114144563-114144864(-)$1	301	111	141	21.3888
GGGCGCGGGCGCGGAGCGGAAGCGAAGGCU	chr5:74162100-74162384(-)$1	284	125	155	20.2777
GCGGGCGGAGGGGGAACGUCGGCGUAGGGU	chr20:52209721-52209999(-)$1	278	102	132	19.6296
gcgcgggggcgcggcgggcgggcgggcggg	chr1:6845676-6845955(+)$1	279	54	84	25.3703
GGAGCCGGGCGCGGGGAGGGGUCCUCGGGG	chr11:116968578-116968854(-)$1	276	225	255	22.1296
gggggcuggcgcgggguggcgggcgggggc	chr2:95825186-95825454(-)$1	268	71	101	26.7592
GGGUGGGGGUGGGGAGCGCAGGGCCGGACU	chr3:184032592-184032827(+)$1	235	63	93	16.0185
CUGCGUGCGUGCGGAGCGCGGGGGCGCGGC	chr22:50355767-50356028(+)$1	261	124	154	15.7407
GGGCCCGGAGGGUGGGCGCGGGCCUGCGGG	chr6:155055065-155055313(+)$1	248	62	92	16.0185
GGGCGCGGGCGCGGAGCGGAAGCGAAGGCU	chr5:74162044-74162300(-)$1	256	41	71	20.2777
GUAGGAGGGCGGCGACCCCGGCCCUCGGGG	chr7:5459891-5460121(-)$1	230	48	78	13.2407
CCGGGCGGGUGAGCGCGGCUCCCCGCGGGG	chr12:53846355-53846633(+)$1	278	136	166	17.9629
CAGGGCGGGGACGGGGAGCGCGCCUGGACU	chr13:99228465-99228719(-)$1	254	189	219	16.2037
CCGGGCACCCGGGGCAGCGGGGCUGGGGGC	chr17:36878231-36878475(+)$1	244	57	87	15.4629
GGGAGGGGGAGCCGCUCGCCGGGAGCGGGU	chr16:30969208-30969488(+)$1	280	209	239	14.5370
AGGUGCGGGUGGGCAGGGGAUgccgcggga	chr13:114238959-114239239(+)$1	280	242	272	18.5185
gcgggcgcgggUGGAUCGGCGCCUCGGGGC	chr12:133136455-133136701(+)$1	246	3	33	17.6851
GAAGGUUGCGGGGGAGGGCAGGGUGCGGGG	chr4:87928542-87928801(+)$1	259	86	116	16.0185
gcgggcgggugcggaacgcgggccucgggg	chr19:39833236-39833517(+)$1	281	105	135	32.4999
cggggcgcgccggggccgggcgcgcgggga	chr19:3062229-3062530(-)$1	301	143	173	17.6851
gccgccgggcgcggggcUGCAGCGACGGGU	chr18:67956226-67956524(+)$1	298	237	267	18.3333
CGCAGCGGGUGCGGAgggcgggcgcccggc	chr7:111202291-111202542(-)$1	251	15	45	22.5925
aggggagggcgcggggggcgggcgcggggg	chr2:242641598-242641838(+)$1	240	86	116	29.0740
GCCGCUCGGGGCUGAUGGGGGGCGGUGGGG	chr19:954600-954872(+)$1	272	210	240	16.7592
GUGGGUGGAGGGGGAGGAUGGGCUGCGGCU	chr9:130159890-130160157(+)$1	267	228	258	17.8703
ggggaggggagggcaaggcgcggcggggga	chr2:191513652-191513915(+)$1	263	114	144	17.0370
CCGGGCCGGUGGGGGAGGGGCGGCCACGGU	chr3:47205069-47205310(-)$1	241	208	238	17.5925
ucgggcgcgggcgcggggucgggugcgggg	chr9:139780924-139781190(+)$1	266	98	128	19.5370
GUCGGCAGAGGCGGAGCUGGGGCACUGGGG	chr12:132413970-132414260(+)$1	290	218	248	17.9629
GGCAGCCGGUGCGGCGGGGUCGCCACGGCC	chr1:90308870-90309112(+)$1	242	154	184	17.5925
GCAGGCGGCUGAGGGGUGGAGGGUGGGGCU	chr17:36760916-36761165(-)$1	249	68	98	16.2037
gggggcgggggcugccgcagagccgggcug	chr6:15248952-15249241(+)$1	289	137	167	16.3888
CUCUGAGGGUGCGGGGUGGGAGCCUGGGGG	chr16:685858-686069(-)$1	211	72	102	20.0925
gggggagggcgcggccgugcgggcggccgg	chr18:45456860-45457121(-)$1	261	16	46	17.0370
GUGGGUCGUGAGGGAGUGCGGGCUGCGGGC	chr9:91003395-91003653(+)$1	258	80	110	17.2222
agggacggggccggauggcagggcagggag	chr17:79915992-79916282(-)$1	290	105	135	15.3703
GGCGGCGUGGGGGCGACCGCGGCCGGGGGC	chr12:12714659-12714918(-)$1	259	43	73	17.4999
gcggcugggggagcgggcgggggcgcAGGU	chr9:140513681-140513945(+)$1	264	56	86	15.1851
ccgggcccgcgcugcgcgcgcgccgugcgg	chr20:34359928-34360189(+)$1	261	118	148	15.6481
ggcggcggccgcgggaagcgagcccgggag	chr2:61764486-61764762(-)$1	276	148	178	19.9074

#otherMatches

#Struct PSSM
[bbbb[cccdddd[cccmmmmccc]dddd]	chr14:105261533-105261793(-)$1	260	43	73	20.2777
CCCCCCZZZDDDD}CCCJJJJJJJJJJBBK	chr20:61557300-61557598(-)$1	298	161	191	18.4259
iiiiiiiillliiiiiiiii::DDDD}GGG	chr2:20549951-20550293(-)$1	342	64	94	14.9074
JJJJJJJJeeeeellleeeeeddddmmmmd	chr1:167191008-167191256(+)$1	248	11	41	14.8148
ddd:bb[bb[iiiiiiiii!!bb"""iiii	chr1:90308912-90309166(+)$1	254	112	142	17.5925
bb22bb]ccc4444eeeee:BB}HHHHHHH	chr1:155947805-155948094(-)$1	289	79	109	19.1666
b]ffffff]bb]a]ddddbb[dddd[hhhh	chr11:3013163-3013460(-)$1	297	145	175	15.1851
:::::::CCC{AKKDDDD{DDDDMMMMJJJ	chr16:2564419-2564660(+)$1	241	20	50	19.9074
ff!!dddd[bb[iiiiiiiiimmmmiiiii	chr19:56632061-56632317(-)$1	256	85	115	21.2037
JJJJJ{EEEEEccclllccc:HHHHHHHHA	chr19:42788308-42788565(+)$1	257	39	69	15.0925
ffffff[cccooooooccc333ffffffBB	chr3:149688199-149688473(-)$1	274	102	132	25.7407
mmmmdddd]dddd22a22dddd55555eee	chr20:62526647-62526945(+)$1	298	199	229	14.9074
EEE}AYYEEEEE:::::bb[ffffff!!ee	chr16:89556017-89556290(-)$1	273	118	148	20.1851
eee[bb!!bb[a[ffffff[aooooooa]f	chr9:136223066-136223330(-)$1	264	91	121	15.5555
:::::::A{DDDDKKA{EEEEE{CCC{A{D	chr13:114144563-114144864(-)$1	301	111	141	21.3888
555ccc]==========:::cccmmmmccc	chr5:74162100-74162384(-)$1	284	125	155	20.2777
dd[ddddrrrrrrrrrdddd]ddddfffff	chr20:52209721-52209999(-)$1	278	102	132	19.6296
bb]ccc]a]ccc]a22a]dddd22aFFFFF	chr1:6845676-6845955(+)$1	279	54	84	25.3703
ppppppffffff]bb::::IIIIIIIII}C	chr11:116968578-116968854(-)$1	276	225	255	22.1296
mmmmccc]bbbboooooobbdddd[ccc[b	chr2:95825186-95825454(-)$1	268	71	101	26.7592
CCC{EEEEE{DDDD{CCCKKGGGGGGGMMM	chr3:184032592-184032827(+)$1	235	63	93	16.0185
FFFFFFJJJJJJJJJJ:::GGGGGGG{EEE	chr22:50355767-50356028(+)$1	261	124	154	15.7407
a[eeeeennnnneeeee]a]eeeee]ccc5	chr6:155055065-155055313(+)$1	248	62	92	16.0185
555ccc]==========:::cccmmmmccc	chr5:74162044-74162300(-)$1	256	41	71	20.2777
mmmbb]bbdddd333ccc]dddd]cccFFF	chr7:5459891-5460121(-)$1	230	48	78	13.2407
ff:ccca[bb[eeeeeggggggglllgggg	chr12:53846355-53846633(+)$1	278	136	166	17.9629
b22a]eeeee22dddd]ccc]dddddddd]	chr13:99228465-99228719(-)$1	254	189	219	16.2037
]dddd55555ggggggg]ccc]bb]cccee	chr17:36878231-36878475(+)$1	244	57	87	15.4629
bb]bb]bb]a:iiiiiiiiipppppppiii	chr16:30969208-30969488(+)$1	280	209	239	14.5370
3gggggggddddbb]dddd]bb]eeeeecc	chr13:114238959-114239239(+)$1	280	242	272	18.5185
d[============"""dddd####eeeee	chr12:133136455-133136701(+)$1	246	3	33	17.6851
fffffbb]ccc]a]a]ccc:eeeee!!ggg	chr4:87928542-87928801(+)$1	259	86	116	16.0185
b[============"""bb####dddd[ee	chr19:39833236-39833517(+)$1	281	105	135	32.4999
hhhhhh[eeeee!!ccc!!dddd[ccc###	chr19:3062229-3062530(-)$1	301	143	173	17.6851
ddd::::===========bb[bbcccqqqq	chr18:67956226-67956524(+)$1	298	237	267	18.3333
FFFFDDDD{DDDD{EEEEE:ccc[ccc[bb	chr7:111202291-111202542(-)$1	251	15	45	22.5925
a[dddd[ggggggg!!ccc[dddd[bbnnn	chr2:242641598-242641838(+)$1	240	86	116	29.0740
hhhhhh22bb]bb]ffffff::::ffffff	chr19:954600-954872(+)$1	272	210	240	16.7592
f]eeeeeJJJJJJJJJJ}DDDDYYBBccco	chr9:130159890-130160157(+)$1	267	228	258	17.8703
bb[a[a[bb!!dddd!!dddd!!ammmma2	chr2:191513652-191513915(+)$1	263	114	144	17.0370
hhhhhhhCCC}EEEEE}HHHHHHHH:::::	chr3:47205069-47205310(-)$1	241	208	238	17.5925
cca[bb[ccc[a[bb[a[dddd[ammmma]	chr9:139780924-139781190(+)$1	266	98	128	19.5370
[bb[bbmmmmbb]bb]bb333bb]bb]ccc	chr12:132413970-132414260(+)$1	290	218	248	17.9629
eeee[ggggggg!!a!!eeeeellleeeee	chr1:90308870-90309112(+)$1	242	154	184	17.5925
::::ccc!!bb[dddd[ffffff[ffffff	chr17:36760916-36761165(-)$1	249	68	98	16.2037
dd[cccmmmmccc]dddd::A}GGGGGGGg	chr6:15248952-15249241(+)$1	289	137	167	16.3888
D{AFFFFFF{FFFFFF:CCC:dddd[dddd	chr16:685858-686069(-)$1	211	72	102	20.0925
IIIIIIIII::gggggggmmmmggggggg:	chr18:45456860-45457121(-)$1	261	16	46	17.0370
==========%%%%%%dddd!!bb[=====	chr9:91003395-91003653(+)$1	258	80	110	17.2222
]eeeeeFFFFFFEEEEEDDDD}EEEEECCC	chr17:79915992-79916282(-)$1	290	105	135	15.3703
fffff333bb]dddd:::fffffflllfff	chr12:12714659-12714918(-)$1	259	43	73	17.4999
iiiii!!dddd!!aeeeee[==========	chr9:140513681-140513945(+)$1	264	56	86	15.1851
GGGGhhhhhhhh[cccmmmmccc]hhhhhh	chr20:34359928-34360189(+)$1	261	118	148	15.6481
]bb22eeeee88888888bb]dddd]ffff	chr2:61764486-61764762(-)$1	276	148	178	19.9074

#DB
.((((.(((((((.(((....))).)))).	chr14:105261533-105261793(-)$1	1	43	73	20.2777
))))))...)))).)))((((((((((((.	chr20:61557300-61557598(-)$1	1	161	191	18.4259
((((((((...)))))))))..)))).)))	chr2:20549951-20550293(-)$1	1	64	94	14.9074
(((((((((((((...)))))((((....)	chr1:167191008-167191256(+)$1	1	11	41	14.8148
))).((.((.(((((((((..((...((((	chr1:90308912-90309166(+)$1	1	112	142	17.5925
))..)).)))....))))).)).)))))))	chr1:155947805-155948094(-)$1	1	79	109	19.1666
).)))))).)).).))))((.((((.((((	chr11:3013163-3013460(-)$1	1	145	175	15.1851
.......(((.(..((((.((((....(((	chr16:2564419-2564660(+)$1	1	20	50	19.9074
((..((((.((.(((((((((....)))))	chr19:56632061-56632317(-)$1	1	85	115	21.2037
(((((.((((((((...))).(((((((((	chr19:42788308-42788565(+)$1	1	39	69	15.0925
((((((.(((......)))...))))))))	chr3:149688199-149688473(-)$1	1	102	132	25.7407
....)))).))))..)..)))).....)))	chr20:62526647-62526945(+)$1	1	199	229	14.9074
))).)..))))).....((.((((((..((	chr16:89556017-89556290(-)$1	1	118	148	20.1851
(((.((..((.(.((((((.(......).)	chr9:136223066-136223330(-)$1	1	91	121	15.5555
.......(.((((..(.(((((.(((.(.(	chr13:114144563-114144864(-)$1	1	111	141	21.3888
...))).))))))))))...(((....)))	chr5:74162100-74162384(-)$1	1	125	155	20.2777
((.((((.........)))).)))))))))	chr20:52209721-52209999(-)$1	1	102	132	19.6296
)).))).).))).)..).))))..)(((((	chr1:6845676-6845955(+)$1	1	54	84	25.3703
......)))))).))....))))))))).)	chr11:116968578-116968854(-)$1	1	225	255	22.1296
....))).))((......))((((.(((.(	chr2:95825186-95825454(-)$1	1	71	101	26.7592
(((.(((((.((((.(((..(((((((...	chr3:184032592-184032827(+)$1	1	63	93	16.0185
))))))))))))))))...(((((((.(((	chr22:50355767-50356028(+)$1	1	124	154	15.7407
(.(((((.....))))).).))))).))).	chr6:155055065-155055313(+)$1	1	62	92	16.0185
...))).))))))))))...(((....)))	chr5:74162044-74162300(-)$1	1	41	71	20.2777
...)).))))))...))).)))).)))(((	chr7:5459891-5460121(-)$1	1	48	78	13.2407
)).((((.((.((((((((((((...))))	chr12:53846355-53846633(+)$1	1	136	166	17.9629
)..).)))))..)))).))).)))))))).	chr13:99228465-99228719(-)$1	1	189	219	16.2037
.)))).....))))))).))).)).)))((	chr17:36878231-36878475(+)$1	1	57	87	15.4629
)).)).)).).(((((((((.......)))	chr16:30969208-30969488(+)$1	1	209	239	14.5370
.))))))))))))).)))).)).)))))))	chr13:114238959-114239239(+)$1	1	242	272	18.5185
(.((((((((((((...((((....(((((	chr12:133136455-133136701(+)$1	1	3	33	17.6851
))))))).))).).).))).(((((..(((	chr4:87928542-87928801(+)$1	1	86	116	16.0185
(.((((((((((((...((....((((.((	chr19:39833236-39833517(+)$1	1	105	135	32.4999
((((((.(((((..(((..((((.(((...	chr19:3062229-3062530(-)$1	1	143	173	17.6851
)))....(((((((((((((.(((((....	chr18:67956226-67956524(+)$1	1	237	267	18.3333
((((((((.((((.(((((.(((.(((.((	chr7:111202291-111202542(-)$1	1	15	45	22.5925
(.((((.(((((((..(((.((((.((...	chr2:242641598-242641838(+)$1	1	86	116	29.0740
))))))..)).)).))))))....((((((	chr19:954600-954872(+)$1	1	210	240	16.7592
).))))))))))))))).))))..))(((.	chr9:130159890-130160157(+)$1	1	228	258	17.8703
((.(.(.((..((((..((((..(....).	chr2:191513652-191513915(+)$1	1	114	144	17.0370
)))))))))).))))).)))))))).....	chr3:47205069-47205310(-)$1	1	208	238	17.5925
(((.((.(((.(.((.(.((((.(....).	chr9:139780924-139781190(+)$1	1	98	128	19.5370
.((.((....)).)).))...)).)).)))	chr12:132413970-132414260(+)$1	1	218	248	17.9629
((((.(((((((..(..(((((...)))))	chr1:90308870-90309112(+)$1	1	154	184	17.5925
....(((..((.((((.((((((.((((((	chr17:36760916-36761165(-)$1	1	68	98	16.2037
((.(((....))).))))..).)))))))(	chr6:15248952-15249241(+)$1	1	137	167	16.3888
(.(((((((.((((((.(((.((((.((((	chr16:685858-686069(-)$1	1	72	102	20.0925
(((((((((..(((((((....))))))).	chr18:45456860-45457121(-)$1	1	16	46	17.0370
((((((((((......((((..((.(((((	chr9:91003395-91003653(+)$1	1	80	110	17.2222
.)))))))))))))))))))).)))))(((	chr17:79915992-79916282(-)$1	1	105	135	15.3703
)))))...)).))))...((((((...)))	chr12:12714659-12714918(-)$1	1	43	73	17.4999
(((((..((((..((((((.((((((((((	chr9:140513681-140513945(+)$1	1	56	86	15.1851
((((((((((((.(((....))).))))))	chr20:34359928-34360189(+)$1	1	118	148	15.6481
.))..)))))........)).)))).))))	chr2:61764486-61764762(-)$1	1	148	178	19.9074

#PSSM
G : 0.33	g : 0.27	C : 0.22	c : 0.07	a : 0.03	U : 0.01	A : 0.01	u : 0.01	
G : 0.22	g : 0.22	C : 0.20	c : 0.16	U : 0.12	A : 0.03	u : 0.01	
G : 0.37	g : 0.33	C : 0.14	c : 0.07	A : 0.07	
g : 0.38	G : 0.35	C : 0.09	A : 0.07	U : 0.07	c : 0.01	
G : 0.51	g : 0.29	c : 0.05	C : 0.05	a : 0.03	U : 0.01	u : 0.01	
C : 0.37	c : 0.25	U : 0.09	G : 0.07	u : 0.05	g : 0.05	A : 0.05	a : 0.03	
G : 0.40	g : 0.29	C : 0.11	c : 0.07	A : 0.05	a : 0.01	u : 0.01	U : 0.01	
G : 0.49	g : 0.31	c : 0.09	U : 0.03	C : 0.03	A : 0.01	
G : 0.42	g : 0.37	A : 0.07	C : 0.05	U : 0.03	c : 0.03	
U : 0.25	g : 0.18	G : 0.18	c : 0.14	C : 0.11	u : 0.03	a : 0.03	A : 0.03	
G : 0.55	g : 0.31	c : 0.09	A : 0.03	
C : 0.31	c : 0.27	G : 0.24	g : 0.07	A : 0.03	u : 0.01	U : 0.01	a : 0.01	
G : 0.53	g : 0.35	U : 0.03	C : 0.03	u : 0.03	
G : 0.55	g : 0.31	c : 0.07	C : 0.05	
A : 0.33	g : 0.22	G : 0.16	C : 0.11	c : 0.09	a : 0.07	
G : 0.35	g : 0.22	C : 0.09	A : 0.09	c : 0.09	a : 0.07	U : 0.05	u : 0.01	
C : 0.24	G : 0.24	g : 0.24	c : 0.11	U : 0.07	u : 0.03	A : 0.03	a : 0.01	
G : 0.44	g : 0.25	C : 0.11	c : 0.07	U : 0.05	u : 0.03	A : 0.01	
G : 0.35	C : 0.24	c : 0.22	g : 0.11	U : 0.03	u : 0.01	a : 0.01	
G : 0.35	g : 0.27	A : 0.11	C : 0.09	U : 0.07	c : 0.07	a : 0.01	
G : 0.38	g : 0.22	C : 0.12	A : 0.09	a : 0.07	c : 0.07	U : 0.01	
G : 0.49	g : 0.38	C : 0.09	U : 0.01	
C : 0.42	c : 0.22	G : 0.16	g : 0.14	U : 0.01	a : 0.01	
C : 0.25	c : 0.22	G : 0.14	U : 0.14	g : 0.11	A : 0.07	u : 0.03	
G : 0.25	g : 0.22	C : 0.12	U : 0.12	A : 0.11	c : 0.07	a : 0.03	u : 0.03	
C : 0.27	G : 0.24	g : 0.20	c : 0.12	A : 0.07	U : 0.03	a : 0.01	u : 0.01	
G : 0.55	g : 0.27	c : 0.05	C : 0.05	U : 0.01	u : 0.01	A : 0.01	
G : 0.57	g : 0.27	c : 0.07	A : 0.03	C : 0.01	U : 0.01	
G : 0.44	g : 0.27	C : 0.18	a : 0.03	c : 0.01	U : 0.01	u : 0.01	
g : 0.24	G : 0.22	U : 0.22	C : 0.18	c : 0.05	a : 0.05	A : 0.01	

#score	1001.296296296296
#seq	54
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_UTR_m3_run2.nuc.txt

#NT
GACAGCAGUGGUGCGGGGGAUAAUGCACCGGGAGGCCUUUAACAUCAUUGGCCGCCGCAUAGUCCAGGUGGCCCAGGCCAUGUCUUUGACUGAGGAUGUGCUUGCUGCUGCUCUGGCUGACCACCUUCCAGAGGACAAGUGGAGCGCUGAGAAGAGGCGGCCUCUCAAGUCCAGCUUGGGUAGGGCACCAGGCUCUGCCACAUGAAGGGAGAGGAAAUGAAUUACAUGGGGCAGGAGGGAAAUCUGCAUGCCAACUUCUUUCUCCUUUCUUCUCUAGU	chr17:26888339-26888670(-)$1	331	52	330	361.5000

#otherMatches

#Struct PSSM
:CCC{GGGGGGGLLLFFFFFFddddmmmmdddd::dddd!!dddd####ccc[ccclllccc]ccc22dddd]dddd::::::::::=============rrrrrrrrr=============:::::::ffffffuuuuuuuuuuuuffffff::ccc[ffffff[ddddoooooodddd22ffffff22ccc:::::::::FFFFFF////////GGGGGGG}CCC:::::::::iiiiiiiii[eeeee[fffffflllffffffeeeee]iiiii	chr2:95752965-95753271(-)$1	306	24	302	361.5000
DDD{BB::gggggggqqqqqqqqgggggggbb[dddduuuuuuuuuuuudddd]bbBBZZZDDDDYYA}FFFFFFCCCFFFFFF}CCCYYBB}BB::ffffffccc!!a[ffffff!!annnnna22ffffff]a22ccc]ffffffDDDDIIIIIIIII:::::eeeeellleeeeehhhhhhhhnnnnnhhhhhhhh::::JJJJJJJJJJCCCcccnnnnnccc::dddda[cccmmmmccc]a]dddd:::CCC}JJJJJJJJJJ:::::::::	chr17:26888339-26888670(-)$1	331	52	330	361.5000

#DB
.(((.(((((((...((((((((((....))))..((((..((((....(((.(((...))).)))..)))).))))..........(((((((((((((.........))))))))))))).......((((((............))))))..(((.((((((.((((......))))..))))))..))).........))))))........))))))).))).........(((((((((.(((((.((((((...))))))))))).)))))	chr2:95752965-95753271(-)$1	1	24	302	361.5000
(((.((..(((((((........)))))))((.((((............)))).))))...))))..).))))))))))))))).)))..)).))..(((((((((..(.((((((..(.....)..)))))).)..))).))))))))))))))))))).....(((((...)))))((((((((.....))))))))....((((((((((((((((.....)))..(((((.(((....))).).))))...))).)))))))))).........	chr17:26888339-26888670(-)$1	1	52	330	361.5000

#PSSM
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 1.00	

#score	723.0
#seq	2
#width	278
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_transcript_m3_run1.nuc.txt

#NT
GGAG	chr20:62299195-62299468(+)$1	273	29	33	12.0000
GGAG	chr1:33245672-33245925(-)$1	253	141	145	12.0000
GGAG	chr1:27022558-27022804(+)$1	246	4	8	12.0000
GGAG	chr5:175816488-175816784(+)$1	296	59	63	12.0000
GGAG	chr3:48481851-48482064(+)$1	213	4	8	12.0000
GGAG	chr1:53738326-53738625(-)$1	299	58	62	12.0000
GGAG	chr1:1309379-1309671(-)$1	292	15	19	12.0000
GGAG	chr8:21939027-21939291(+)$1	264	14	18	12.0000
GGAG	chr19:1408185-1408474(+)$1	289	74	78	12.0000
GGAG	chr6:44122996-44123283(+)$1	287	59	63	12.0000
GGAG	chr17:73774687-73774904(-)$1	217	29	33	12.0000
GGAG	chr22:42302132-42302389(+)$1	257	124	128	12.0000
GGAG	chr9:130925805-130926080(+)$1	275	7	11	12.0000
GGAG	chr17:36890995-36891279(-)$1	284	112	116	12.0000
GGAG	chr8:20078906-20079163(+)$1	257	216	220	12.0000
GGAG	chr11:62360764-62361015(-)$1	251	7	11	12.0000
GGAG	chr17:53470290-53470592(-)$1	302	60	64	12.0000
GGAG	chr5:34915812-34916079(+)$1	267	1	5	12.0000
ggag	chr2:220403039-220403312(+)$1	273	0	4	12.0000
GGAG	chr1:156280257-156280539(-)$1	282	73	77	12.0000
GGAG	chr6:33258440-33258690(+)$1	250	106	110	12.0000
GGAG	chr6:33258396-33258640(+)$1	244	150	154	12.0000
GGAG	chr12:112460373-112460631(+)$1	258	10	14	12.0000
GGAG	chr1:173454457-173454681(+)$1	224	113	117	12.0000
GGAG	chr19:49377457-49377721(+)$1	264	2	6	12.0000
GGAG	chr16:30003325-30003571(+)$1	246	182	186	12.0000
GGAG	chr7:158424005-158424350(-)$1	345	143	147	12.0000
GGAG	chr19:1420404-1420715(+)$1	311	115	119	12.0000
GGAG	chr3:13358074-13358308(-)$1	234	167	171	12.0000
ggag	chr4:174253014-174253331(-)$1	317	40	44	12.0000
GGAG	chrX:153664529-153664775(+)$1	246	88	92	12.0000
GGAG	chr1:36787421-36787712(+)$1	291	120	124	12.0000
GGAG	chr21:45564846-45565090(+)$1	244	40	44	12.0000
GGAG	chr21:46855506-46855788(+)$1	282	2	6	12.0000
GGAG	chr15:77338344-77338615(-)$1	271	51	55	12.0000
ggag	chr8:30669801-30670092(-)$1	291	50	54	12.0000
GGAG	chr19:4038383-4038641(+)$1	258	37	41	12.0000
GGAG	chr6:33377463-33377671(+)$1	208	108	112	12.0000
ggag	chr1:27022727-27022995(+)$1	268	11	15	12.0000
ggag	chr8:1779070-1779371(+)$1	301	30	34	12.0000
GGAG	chr19:42751754-42752035(-)$1	281	258	262	12.0000
GGAG	chr1:59247143-59247380(-)$1	237	55	59	12.0000
GGAG	chrX:77160576-77160928(+)$1	352	168	172	12.0000
GGAG	chr19:13262119-13262363(+)$1	244	110	114	12.0000
GGAG	chr11:62482188-62482448(-)$1	260	73	77	12.0000
GGAG	chrX:53221475-53221727(-)$1	252	58	62	12.0000
GGAG	chr15:64980329-64980583(-)$1	254	21	25	12.0000
GGAG	chr16:85646223-85646456(+)$1	233	186	190	12.0000
GGAG	chr7:44252496-44252807(+)$1	311	60	64	12.0000
GGAG	chr1:249104571-249104836(-)$1	265	31	35	12.0000
GGAG	chr1:46083630-46083844(+)$1	214	134	138	12.0000
GGAG	chr11:62392840-62393068(-)$1	228	34	38	12.0000
GGAG	chr1:235274974-235275221(-)$1	247	199	203	12.0000
GGAG	chr3:50644058-50644331(-)$1	273	18	22	12.0000
GGAG	chr22:38062731-38062997(+)$1	266	200	204	12.0000
GGAG	chr12:56552054-56552289(+)$1	235	85	89	12.0000
GGAG	chr15:69072228-69072484(-)$1	256	47	51	12.0000
GGAG	chr4:38666705-38666983(+)$1	278	20	24	12.0000
GGAG	chr2:98263755-98263987(+)$1	232	78	82	12.0000
GGAG	chr1:150547008-150547360(-)$1	352	54	58	12.0000
GGAG	chr18:55217085-55217340(-)$1	255	194	198	12.0000
ggag	chr22:49975083-49975346(-)$1	263	12	16	12.0000
GGAG	chr11:118915174-118915397(-)$1	223	62	66	12.0000
GGAG	chr12:6879242-6879478(+)$1	236	138	142	12.0000
GGAG	chr9:136131878-136132110(-)$1	232	18	22	12.0000
GGAG	chr16:30535362-30535632(-)$1	270	5	9	12.0000
GGAG	chr22:36134765-36135017(-)$1	252	63	67	12.0000
GGAG	chr7:150841058-150841425(+)$1	367	60	64	12.0000
GGAG	chr1:231701664-231701916(+)$1	252	117	121	12.0000
GGAG	chr12:110927870-110928142(+)$1	272	48	52	12.0000
GGAG	chr15:38776747-38777033(+)$1	286	41	45	12.0000
GGAG	chr3:38496131-38496432(+)$1	301	4	8	12.0000
GGAG	chr2:89049573-89049873(+)$1	300	3	7	12.0000
GGAG	chr19:18548133-18548394(-)$1	261	14	18	12.0000
GGAG	chr1:33789713-33789992(-)$1	279	42	46	12.0000
GGAG	chr2:217363900-217364137(+)$1	237	14	18	12.0000
GGAG	chr12:122459772-122460078(+)$1	306	167	171	12.0000
GGAG	chr2:130919689-130919992(-)$1	303	48	52	12.0000
ggAG	chr2:46926276-46926552(+)$1	276	28	32	12.0000
GGAG	chr5:126172493-126172769(+)$1	276	94	98	12.0000
GGAG	chr1:53692515-53692787(-)$1	272	104	108	12.0000

#otherMatches

#Struct PSSM
bbpp	chr4:714019-714298(+)$1	279	4	8	12.0000
GGGG	chr20:62299195-62299468(+)$1	273	29	33	12.0000
a22b	chr1:33245672-33245925(-)$1	253	141	145	12.0000
::::	chr1:27022558-27022804(+)$1	246	4	8	12.0000
eeee	chr5:175816488-175816784(+)$1	296	59	63	12.0000
FF::	chr3:48481851-48482064(+)$1	213	4	8	12.0000
:::B	chr1:53738326-53738625(-)$1	299	58	62	12.0000
FFF:	chr1:1309379-1309671(-)$1	292	15	19	12.0000
GGGG	chr8:21939027-21939291(+)$1	264	14	18	12.0000
FFF{	chr19:1408185-1408474(+)$1	289	74	78	12.0000
eeee	chr6:44122996-44123283(+)$1	287	59	63	12.0000
e]cc	chr17:73774687-73774904(-)$1	217	29	33	12.0000
HHH~	chr22:42302132-42302389(+)$1	257	124	128	12.0000
b!!=	chr9:130925805-130926080(+)$1	275	7	11	12.0000
ffff	chr17:36890995-36891279(-)$1	284	112	116	12.0000
IIII	chr8:20078906-20079163(+)$1	257	216	220	12.0000
JJJJ	chr11:62360764-62361015(-)$1	251	7	11	12.0000
eDDD	chr17:53470290-53470592(-)$1	302	60	64	12.0000
CCBB	chr5:34915812-34916079(+)$1	267	1	5	12.0000
::::	chr2:220403039-220403312(+)$1	273	0	4	12.0000
ffuu	chr1:156280257-156280539(-)$1	282	73	77	12.0000
ddll	chr6:33258440-33258690(+)$1	250	106	110	12.0000
ddll	chr6:33258396-33258640(+)$1	244	150	154	12.0000
::::	chr12:112460373-112460631(+)$1	258	10	14	12.0000
b22d	chr1:173454457-173454681(+)$1	224	113	117	12.0000
::::	chr19:49377457-49377721(+)$1	264	2	6	12.0000
!!ff	chr16:30003325-30003571(+)$1	246	182	186	12.0000
JJJe	chr7:158424005-158424350(-)$1	345	143	147	12.0000
bb[b	chr19:1420404-1420715(+)$1	311	115	119	12.0000
dddd	chr3:13358074-13358308(-)$1	234	167	171	12.0000
::::	chr4:174253014-174253331(-)$1	317	40	44	12.0000
ffff	chrX:153664529-153664775(+)$1	246	88	92	12.0000
nna]	chr1:36787421-36787712(+)$1	291	120	124	12.0000
ee44	chr21:45564846-45565090(+)$1	244	40	44	12.0000
C{BB	chr21:46855506-46855788(+)$1	282	2	6	12.0000
GLLL	chr15:77338344-77338615(-)$1	271	51	55	12.0000
"""c	chr8:30669801-30670092(-)$1	291	50	54	12.0000
llld	chr19:4038383-4038641(+)$1	258	37	41	12.0000
FFOO	chr6:33377463-33377671(+)$1	208	108	112	12.0000
dd""	chr1:27022727-27022995(+)$1	268	11	15	12.0000
MMMA	chr8:1779070-1779371(+)$1	301	30	34	12.0000
GGG}	chr19:42751754-42752035(-)$1	281	258	262	12.0000
ffff	chr1:59247143-59247380(-)$1	237	55	59	12.0000
cc]b	chrX:77160576-77160928(+)$1	352	168	172	12.0000
:bb"	chr19:13262119-13262363(+)$1	244	110	114	12.0000
dddd	chr11:62482188-62482448(-)$1	260	73	77	12.0000
JJJJ	chrX:53221475-53221727(-)$1	252	58	62	12.0000
ff[g	chr15:64980329-64980583(-)$1	254	21	25	12.0000
====	chr16:85646223-85646456(+)$1	233	186	190	12.0000
hhh3	chr7:44252496-44252807(+)$1	311	60	64	12.0000
"a##	chr1:249104571-249104836(-)$1	265	31	35	12.0000
ddd2	chr1:46083630-46083844(+)$1	214	134	138	12.0000
ffff	chr11:62392840-62393068(-)$1	228	34	38	12.0000
444h	chr1:235274974-235275221(-)$1	247	199	203	12.0000
ff:E	chr3:50644058-50644331(-)$1	273	18	22	12.0000
ddd2	chr22:38062731-38062997(+)$1	266	200	204	12.0000
c"""	chr12:56552054-56552289(+)$1	235	85	89	12.0000
cc[f	chr15:69072228-69072484(-)$1	256	47	51	12.0000
[bb!	chr4:38666705-38666983(+)$1	278	20	24	12.0000
C{EE	chr2:98263755-98263987(+)$1	232	78	82	12.0000
====	chr1:150547008-150547360(-)$1	352	54	58	12.0000
hhhh	chr18:55217085-55217340(-)$1	255	194	198	12.0000
::::	chr22:49975083-49975346(-)$1	263	12	16	12.0000
cc33	chr11:118915174-118915397(-)$1	223	62	66	12.0000
cc[h	chr12:6879242-6879478(+)$1	236	138	142	12.0000
DDD{	chr9:136131878-136132110(-)$1	232	18	22	12.0000
FF{B	chr16:30535362-30535632(-)$1	270	5	9	12.0000
eeee	chr22:36134765-36135017(-)$1	252	63	67	12.0000
::::	chr7:150841058-150841425(+)$1	367	60	64	12.0000
hhhh	chr1:231701664-231701916(+)$1	252	117	121	12.0000
!ddd	chr12:110927870-110928142(+)$1	272	48	52	12.0000
eemm	chr15:38776747-38777033(+)$1	286	41	45	12.0000
::::	chr3:38496131-38496432(+)$1	301	4	8	12.0000
dd""	chr2:89049573-89049873(+)$1	300	3	7	12.0000
oooo	chr19:18548133-18548394(-)$1	261	14	18	12.0000
FFFF	chr1:33789713-33789992(-)$1	279	42	46	12.0000
HHHH	chr2:217363900-217364137(+)$1	237	14	18	12.0000
bb!!	chr12:122459772-122460078(+)$1	306	167	171	12.0000
dddd	chr2:130919689-130919992(-)$1	303	48	52	12.0000
dddb	chr2:46926276-46926552(+)$1	276	28	32	12.0000
====	chr5:126172493-126172769(+)$1	276	94	98	12.0000
d!!h	chr1:53692515-53692787(-)$1	272	104	108	12.0000

#DB
((..	chr4:714019-714298(+)$1	1	4	8	12.0000
((((	chr20:62299195-62299468(+)$1	1	29	33	12.0000
)..)	chr1:33245672-33245925(-)$1	1	141	145	12.0000
....	chr1:27022558-27022804(+)$1	1	4	8	12.0000
))))	chr5:175816488-175816784(+)$1	1	59	63	12.0000
((..	chr3:48481851-48482064(+)$1	1	4	8	12.0000
...)	chr1:53738326-53738625(-)$1	1	58	62	12.0000
(((.	chr1:1309379-1309671(-)$1	1	15	19	12.0000
((((	chr8:21939027-21939291(+)$1	1	14	18	12.0000
(((.	chr19:1408185-1408474(+)$1	1	74	78	12.0000
))))	chr6:44122996-44123283(+)$1	1	59	63	12.0000
).))	chr17:73774687-73774904(-)$1	1	29	33	12.0000
))).	chr22:42302132-42302389(+)$1	1	124	128	12.0000
(..(	chr9:130925805-130926080(+)$1	1	7	11	12.0000
((((	chr17:36890995-36891279(-)$1	1	112	116	12.0000
))))	chr8:20078906-20079163(+)$1	1	216	220	12.0000
((((	chr11:62360764-62361015(-)$1	1	7	11	12.0000
)(((	chr17:53470290-53470592(-)$1	1	60	64	12.0000
((((	chr5:34915812-34916079(+)$1	1	1	5	12.0000
....	chr2:220403039-220403312(+)$1	1	0	4	12.0000
((..	chr1:156280257-156280539(-)$1	1	73	77	12.0000
((..	chr6:33258440-33258690(+)$1	1	106	110	12.0000
((..	chr6:33258396-33258640(+)$1	1	150	154	12.0000
....	chr12:112460373-112460631(+)$1	1	10	14	12.0000
)..)	chr1:173454457-173454681(+)$1	1	113	117	12.0000
....	chr19:49377457-49377721(+)$1	1	2	6	12.0000
..((	chr16:30003325-30003571(+)$1	1	182	186	12.0000
((((	chr7:158424005-158424350(-)$1	1	143	147	12.0000
((.(	chr19:1420404-1420715(+)$1	1	115	119	12.0000
((((	chr3:13358074-13358308(-)$1	1	167	171	12.0000
....	chr4:174253014-174253331(-)$1	1	40	44	12.0000
))))	chrX:153664529-153664775(+)$1	1	88	92	12.0000
..).	chr1:36787421-36787712(+)$1	1	120	124	12.0000
))..	chr21:45564846-45565090(+)$1	1	40	44	12.0000
(.((	chr21:46855506-46855788(+)$1	1	2	6	12.0000
(...	chr15:77338344-77338615(-)$1	1	51	55	12.0000
...(	chr8:30669801-30670092(-)$1	1	50	54	12.0000
...)	chr19:4038383-4038641(+)$1	1	37	41	12.0000
((..	chr6:33377463-33377671(+)$1	1	108	112	12.0000
((..	chr1:27022727-27022995(+)$1	1	11	15	12.0000
...(	chr8:1779070-1779371(+)$1	1	30	34	12.0000
))).	chr19:42751754-42752035(-)$1	1	258	262	12.0000
))))	chr1:59247143-59247380(-)$1	1	55	59	12.0000
)).)	chrX:77160576-77160928(+)$1	1	168	172	12.0000
.((.	chr19:13262119-13262363(+)$1	1	110	114	12.0000
))))	chr11:62482188-62482448(-)$1	1	73	77	12.0000
((((	chrX:53221475-53221727(-)$1	1	58	62	12.0000
((.(	chr15:64980329-64980583(-)$1	1	21	25	12.0000
((((	chr16:85646223-85646456(+)$1	1	186	190	12.0000
))).	chr7:44252496-44252807(+)$1	1	60	64	12.0000
.(..	chr1:249104571-249104836(-)$1	1	31	35	12.0000
))).	chr1:46083630-46083844(+)$1	1	134	138	12.0000
))))	chr11:62392840-62393068(-)$1	1	34	38	12.0000
...)	chr1:235274974-235275221(-)$1	1	199	203	12.0000
)).(	chr3:50644058-50644331(-)$1	1	18	22	12.0000
))).	chr22:38062731-38062997(+)$1	1	200	204	12.0000
(...	chr12:56552054-56552289(+)$1	1	85	89	12.0000
((.(	chr15:69072228-69072484(-)$1	1	47	51	12.0000
.((.	chr4:38666705-38666983(+)$1	1	20	24	12.0000
(.((	chr2:98263755-98263987(+)$1	1	78	82	12.0000
))))	chr1:150547008-150547360(-)$1	1	54	58	12.0000
))))	chr18:55217085-55217340(-)$1	1	194	198	12.0000
....	chr22:49975083-49975346(-)$1	1	12	16	12.0000
))..	chr11:118915174-118915397(-)$1	1	62	66	12.0000
((.(	chr12:6879242-6879478(+)$1	1	138	142	12.0000
(((.	chr9:136131878-136132110(-)$1	1	18	22	12.0000
((.(	chr16:30535362-30535632(-)$1	1	5	9	12.0000
((((	chr22:36134765-36135017(-)$1	1	63	67	12.0000
....	chr7:150841058-150841425(+)$1	1	60	64	12.0000
))))	chr1:231701664-231701916(+)$1	1	117	121	12.0000
.(((	chr12:110927870-110928142(+)$1	1	48	52	12.0000
((..	chr15:38776747-38777033(+)$1	1	41	45	12.0000
....	chr3:38496131-38496432(+)$1	1	4	8	12.0000
((..	chr2:89049573-89049873(+)$1	1	3	7	12.0000
....	chr19:18548133-18548394(-)$1	1	14	18	12.0000
((((	chr1:33789713-33789992(-)$1	1	42	46	12.0000
((((	chr2:217363900-217364137(+)$1	1	14	18	12.0000
((..	chr12:122459772-122460078(+)$1	1	167	171	12.0000
))))	chr2:130919689-130919992(-)$1	1	48	52	12.0000
((((	chr2:46926276-46926552(+)$1	1	28	32	12.0000
))))	chr5:126172493-126172769(+)$1	1	94	98	12.0000
(..(	chr1:53692515-53692787(-)$1	1	104	108	12.0000

#PSSM
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	

#score	984.0000000000001
#seq	82
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_CDS_m1_run2.nuc.txt

#NT
CCCAGCAG	chr1:145438942-145439218(+)$1	276	38	46	18.3617
CCCAGAAG	chr1:6269017-6269299(+)$1	282	56	64	15.9148
GCCAGAAG	chr17:65197081-65197368(-)$1	287	218	226	11.9787
CUCAGCAG	chr7:6066057-6066418(-)$1	361	274	282	14.2127
CCCAGCAG	chr19:6416530-6416767(-)$1	237	220	228	18.3617
CCCAGCAG	chrX:153587913-153588148(-)$1	235	175	183	18.3617
UCCAGGAG	chr6:134495545-134495892(-)$1	347	53	61	12.5106
cccagcac	chr2:191789140-191789481(+)$1	341	249	257	14.3191
CCCAACAG	chr3:12641475-12641755(-)$1	280	17	25	13.5744
CCCAGCAC	chr2:27448947-27449185(+)$1	238	175	183	14.3191
ACCAGAAG	chr6:33371149-33371448(+)$1	299	121	129	11.9787
CCCAGGAG	chr16:29810476-29810715(+)$1	239	63	71	16.2340
CCCAGCAU	chr14:58724508-58724827(+)$1	319	268	276	14.2127
CCCUGCAG	chr14:20916034-20916341(-)$1	307	69	77	14.5319
CCCAGCUG	chr11:65630412-65630653(+)$1	241	45	53	14.8510
CCCAGGAC	chr6:43596471-43596725(-)$1	254	59	67	12.1914
CCCAGCAU	chr3:9984894-9985214(+)$1	320	6	14	14.2127
CCCAGGAG	chr11:63987733-63988020(+)$1	287	169	177	16.2340
UCCAGGAG	chr1:16044383-16044654(+)$1	271	64	72	12.5106
CCCCGCAG	chr17:80043142-80043436(-)$1	294	255	263	14.4255
ACCAGCAG	chr16:67263768-67264040(-)$1	272	29	37	14.4255
CCCAGCAA	chr6:31655408-31655681(-)$1	273	115	123	14.1063
CCAAGCAG	chr9:35698368-35698652(-)$1	284	244	252	13.7872
CCCUGCAG	chr11:57506453-57506719(+)$1	266	141	149	14.5319
CCCAGAAG	chr19:1271987-1272239(+)$1	252	178	186	15.9148
CCCAGCUG	chr16:29816021-29816283(+)$1	262	108	116	14.8510
CCCUGCAG	chr6:37138572-37138875(+)$1	303	242	250	14.5319
CCCGGCAG	chr1:3541779-3542099(+)$1	320	208	216	14.5319
CCCAGGUG	chr19:40330832-40331126(-)$1	294	154	162	12.7234
CUCAGAAG	chr1:145440152-145440449(+)$1	297	233	241	11.7659
CCCCGCAG	chrX:153693203-153693488(+)$1	285	149	157	14.4255
UCCAGCAG	chr19:45572306-45572588(+)$1	282	53	61	14.6382
CCCAGGUG	chr17:72768084-72768333(-)$1	249	17	25	12.7234
CCCAGCAG	chr9:131022952-131023199(-)$1	247	140	148	18.3617
CCCAGCUG	chr6:30879327-30879572(+)$1	245	107	115	14.8510
CCCGGCAG	chr6:30888843-30889135(+)$1	292	155	163	14.5319
CUCAGCAG	chr6:33169360-33169645(+)$1	285	184	192	14.2127
UCCAGGAG	chr15:91479586-91479814(+)$1	228	60	68	12.5106
CCCAGAAG	chr16:30094865-30095123(+)$1	258	229	237	15.9148
CUCAGCAG	chr1:249151532-249151859(-)$1	327	293	301	14.2127
CCCAGCUG	chr16:8734876-8735174(+)$1	298	260	268	14.8510
CCCAGGUG	chr8:144663214-144663483(-)$1	269	255	263	12.7234
CCCAGGAG	chr1:154923765-154924024(-)$1	259	192	200	16.2340
CCCGGCAG	chr12:6977831-6978144(+)$1	313	235	243	14.5319
CCCAGAAG	chr8:145738041-145738317(-)$1	276	9	17	15.9148
CCAAGCAG	chr17:42155870-42156114(-)$1	244	142	150	13.7872

#otherMatches

#Struct PSSM
c]iiiiii	chr12:56645622-56645903(-)$1	281	222	230	14.4255
cc####cc	chr1:145438942-145439218(+)$1	276	38	46	18.3617
!!bbmmmm	chr1:6269017-6269299(+)$1	282	56	64	15.9148
dddd]bb:	chr17:65197081-65197368(-)$1	287	218	226	11.9787
FFgggggg	chr7:6066057-6066418(-)$1	361	274	282	14.2127
ddd:BB}B	chr19:6416530-6416767(-)$1	237	220	228	18.3617
GGGGGGGB	chrX:153587913-153588148(-)$1	235	175	183	18.3617
:HHHHHHH	chr6:134495545-134495892(-)$1	347	53	61	12.5106
fffffmmm	chr2:191789140-191789481(+)$1	341	249	257	14.3191
HHH::::e	chr3:12641475-12641755(-)$1	280	17	25	13.5744
gggggggr	chr2:27448947-27449185(+)$1	238	175	183	14.3191
ddd::::d	chr6:33371149-33371448(+)$1	299	121	129	11.9787
ffffff:e	chr16:29810476-29810715(+)$1	239	63	71	16.2340
44ccc]dd	chr14:58724508-58724827(+)$1	319	268	276	14.2127
[bb[ccc[	chr14:20916034-20916341(-)$1	307	69	77	14.5319
ccc::EEE	chr11:65630412-65630653(+)$1	241	45	53	14.8510
DDDMMMMD	chr6:43596471-43596725(-)$1	254	59	67	12.1914
gg"""ddd	chr3:9984894-9985214(+)$1	320	6	14	14.2127
ddd:bb[c	chr11:63987733-63988020(+)$1	287	169	177	16.2340
ffffffmm	chr1:16044383-16044654(+)$1	271	64	72	12.5106
ee!!ffff	chr17:80043142-80043436(-)$1	294	255	263	14.4255
EEEEMMMM	chr16:67263768-67264040(-)$1	272	29	37	14.4255
!!dddd!!	chr6:31655408-31655681(-)$1	273	115	123	14.1063
DZZZCCC~	chr9:35698368-35698652(-)$1	284	244	252	13.7872
eeeee333	chr11:57506453-57506719(+)$1	266	141	149	14.5319
4444a]ee	chr19:1271987-1272239(+)$1	252	178	186	15.9148
ddcccbbb	chr16:29816021-29816283(+)$1	262	108	116	14.8510
DDDDDD}B	chr6:37138572-37138875(+)$1	303	242	250	14.5319
DDDCCC:b	chr1:3541779-3542099(+)$1	320	208	216	14.5319
:ddddhhh	chr19:40330832-40331126(-)$1	294	154	162	12.7234
ff!!bbqq	chr1:145440152-145440449(+)$1	297	233	241	11.7659
gggggg[d	chrX:153693203-153693488(+)$1	285	149	157	14.4255
{GGGGGGG	chr19:45572306-45572588(+)$1	282	53	61	14.6382
ddddccc"	chr17:72768084-72768333(-)$1	249	17	25	12.7234
deeeee##	chr9:131022952-131023199(-)$1	247	140	148	18.3617
dddd]bb4	chr6:30879327-30879572(+)$1	245	107	115	14.8510
dddmmmmd	chr6:30888843-30889135(+)$1	292	155	163	14.5319
5555eeee	chr6:33169360-33169645(+)$1	285	184	192	14.2127
fff[cccf	chr15:91479586-91479814(+)$1	228	60	68	12.5106
oeeeee22	chr16:30094865-30095123(+)$1	258	229	237	15.9148
ddddgggg	chr1:249151532-249151859(-)$1	327	293	301	14.2127
CCCEEEEE	chr16:8734876-8735174(+)$1	298	260	268	14.8510
7hhhhhhh	chr8:144663214-144663483(-)$1	269	255	263	12.7234
ffffff""	chr1:154923765-154924024(-)$1	259	192	200	16.2340
eeeee[ff	chr12:6977831-6978144(+)$1	313	235	243	14.5319
fffmmmmf	chr8:145738041-145738317(-)$1	276	9	17	15.9148
da$$$$$c	chr17:42155870-42156114(-)$1	244	142	150	13.7872

#DB
).))))))	chr12:56645622-56645903(-)$1	1	222	230	14.4255
((....((	chr1:145438942-145439218(+)$1	1	38	46	18.3617
..((....	chr1:6269017-6269299(+)$1	1	56	64	15.9148
)))).)).	chr17:65197081-65197368(-)$1	1	218	226	11.9787
((((((((	chr7:6066057-6066418(-)$1	1	274	282	14.2127
))).)).)	chr19:6416530-6416767(-)$1	1	220	228	18.3617
))))))))	chrX:153587913-153588148(-)$1	1	175	183	18.3617
.(((((((	chr6:134495545-134495892(-)$1	1	53	61	12.5106
(((((...	chr2:191789140-191789481(+)$1	1	249	257	14.3191
(((....(	chr3:12641475-12641755(-)$1	1	17	25	13.5744
(((((((.	chr2:27448947-27449185(+)$1	1	175	183	14.3191
)))....(	chr6:33371149-33371448(+)$1	1	121	129	11.9787
)))))).(	chr16:29810476-29810715(+)$1	1	63	71	16.2340
..))).))	chr14:58724508-58724827(+)$1	1	268	276	14.2127
.((.(((.	chr14:20916034-20916341(-)$1	1	69	77	14.5319
)))..(((	chr11:65630412-65630653(+)$1	1	45	53	14.8510
(((....(	chr6:43596471-43596725(-)$1	1	59	67	12.1914
((...(((	chr3:9984894-9985214(+)$1	1	6	14	14.2127
))).((.(	chr11:63987733-63988020(+)$1	1	169	177	16.2340
((((((..	chr1:16044383-16044654(+)$1	1	64	72	12.5106
((..((((	chr17:80043142-80043436(-)$1	1	255	263	14.4255
((((....	chr16:67263768-67264040(-)$1	1	29	37	14.4255
..((((..	chr6:31655408-31655681(-)$1	1	115	123	14.1063
)...))).	chr9:35698368-35698652(-)$1	1	244	252	13.7872
)))))...	chr11:57506453-57506719(+)$1	1	141	149	14.5319
....).))	chr19:1271987-1272239(+)$1	1	178	186	15.9148
((((((((	chr16:29816021-29816283(+)$1	1	108	116	14.8510
)))))).)	chr6:37138572-37138875(+)$1	1	242	250	14.5319
)))))).(	chr1:3541779-3542099(+)$1	1	208	216	14.5319
.(((((((	chr19:40330832-40331126(-)$1	1	154	162	12.7234
((..((..	chr1:145440152-145440449(+)$1	1	233	241	11.7659
((((((.(	chrX:153693203-153693488(+)$1	1	149	157	14.4255
.(((((((	chr19:45572306-45572588(+)$1	1	53	61	14.6382
))))(((.	chr17:72768084-72768333(-)$1	1	17	25	12.7234
((((((..	chr9:131022952-131023199(-)$1	1	140	148	18.3617
)))).)).	chr6:30879327-30879572(+)$1	1	107	115	14.8510
(((....)	chr6:30888843-30889135(+)$1	1	155	163	14.5319
....))))	chr6:33169360-33169645(+)$1	1	184	192	14.2127
(((.((((	chr15:91479586-91479814(+)$1	1	60	68	12.5106
.)))))..	chr16:30094865-30095123(+)$1	1	229	237	15.9148
))))))))	chr1:249151532-249151859(-)$1	1	293	301	14.2127
))))))))	chr16:8734876-8735174(+)$1	1	260	268	14.8510
.)))))))	chr8:144663214-144663483(-)$1	1	255	263	12.7234
((((((..	chr1:154923765-154924024(-)$1	1	192	200	16.2340
(((((.((	chr12:6977831-6978144(+)$1	1	235	243	14.5319
(((....)	chr8:145738041-145738317(-)$1	1	9	17	15.9148
((.....(	chr17:42155870-42156114(-)$1	1	142	150	13.7872

#PSSM
C : 0.80	U : 0.08	G : 0.04	A : 0.04	c : 0.02	
C : 0.89	U : 0.08	c : 0.02	
C : 0.93	A : 0.04	c : 0.02	
A : 0.80	U : 0.06	G : 0.06	C : 0.04	a : 0.02	
G : 0.95	g : 0.02	A : 0.02	
C : 0.61	G : 0.21	A : 0.14	c : 0.02	
A : 0.82	U : 0.14	a : 0.02	
G : 0.87	C : 0.04	U : 0.04	c : 0.02	A : 0.02	

#score	683.3191489361704
#seq	47
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_UTR_m2_run1.nuc.txt

#NT
UUUG	chr19:17972001-17972218(+)$1	217	178	182	11.9999
UUUG	chr17:38974423-38974688(-)$1	265	198	202	11.9999
UUUG	chr11:46765322-46765602(-)$1	280	181	185	11.9999
UUUG	chr1:1717342-1717586(-)$1	244	11	15	11.9999
UUUG	chr11:59573607-59573933(-)$1	326	0	4	11.9999
UUUG	chr3:179342020-179342310(+)$1	290	21	25	11.9999
UUUG	chr7:130146165-130146419(-)$1	254	5	9	11.9999
UUUG	chr19:9938901-9939169(+)$1	268	66	70	11.9999
UUUG	chrX:106893696-106893983(+)$1	287	193	197	11.9999
UUUG	chr10:70744604-70744850(+)$1	246	21	25	11.9999
UUUG	chr22:41368434-41368752(+)$1	318	33	37	11.9999
UUUG	chr17:41154788-41155044(+)$1	256	1	5	11.9999
UUUG	chr5:177022803-177023066(+)$1	263	108	112	11.9999
UUUG	chrX:153609263-153609529(+)$1	266	231	235	11.9999
UUUG	chr11:47605940-47606203(+)$1	263	178	182	11.9999
UUUG	chr17:46698538-46698811(-)$1	273	30	34	11.9999
UUUG	chr5:137088380-137088621(-)$1	241	6	10	11.9999
uuug	chr16:83842831-83843130(+)$1	299	256	260	11.9999
UUUG	chr11:64084466-64084717(-)$1	251	79	83	11.9999
UUUG	chr11:33730676-33730941(-)$1	265	3	7	11.9999
UUUG	chr7:100276471-100276745(+)$1	274	90	94	11.9999
uuug	chr14:23795198-23795439(+)$1	241	2	6	11.9999
UUUG	chrX:153195504-153195759(-)$1	255	21	25	11.9999
UUUG	chr8:101715365-101715581(-)$1	216	121	125	11.9999
UUUG	chr2:65496331-65496623(+)$1	292	93	97	11.9999
UUUG	chr17:36918562-36918843(+)$1	281	74	78	11.9999
UUUG	chrX:102471941-102472188(+)$1	247	188	192	11.9999
UUUG	chr1:226548745-226548988(-)$1	243	4	8	11.9999
uuug	chr17:40465253-40465501(-)$1	248	76	80	11.9999
UUUG	chr1:150280606-150280880(+)$1	274	116	120	11.9999
UUUG	chr16:31202716-31202973(+)$1	257	75	79	11.9999
UUUG	chr5:179041637-179041883(-)$1	246	202	206	11.9999
UUUG	chr6:34385214-34385423(-)$1	209	108	112	11.9999
UUUG	chr19:1258708-1258989(+)$1	281	4	8	11.9999
UUUG	chr12:110872627-110872909(-)$1	282	17	21	11.9999
UUUG	chr19:42364755-42365013(+)$1	258	165	169	11.9999
UUUG	chr3:13358780-13359070(-)$1	290	129	133	11.9999
uuug	chr19:18390472-18390752(-)$1	280	85	89	11.9999
UUUG	chr4:174252888-174253172(-)$1	284	60	64	11.9999
UUUG	chr17:73034879-73035153(-)$1	274	22	26	11.9999
UUUG	chr9:100689276-100689565(-)$1	289	15	19	11.9999
UUUG	chr21:35275677-35275971(-)$1	294	21	25	11.9999
UUUG	chr2:55199261-55199509(-)$1	248	32	36	11.9999
UUUG	chr12:98995161-98995462(+)$1	301	1	5	11.9999
UUUG	chr6:32083315-32083602(-)$1	287	222	226	11.9999
UUUG	chr8:101715274-101715485(-)$1	211	25	29	11.9999
UUUG	chr2:68405915-68406177(-)$1	262	52	56	11.9999
UUUG	chr16:70286478-70286751(-)$1	273	197	201	11.9999
UUUG	chr7:155100324-155100566(+)$1	242	15	19	11.9999
UUUG	chr1:173457009-173457237(+)$1	228	219	223	11.9999
UUUG	chr4:83345737-83345984(-)$1	247	21	25	11.9999
UUUG	chr16:723952-724206(+)$1	254	60	64	11.9999
UUUG	chr1:149895225-149895530(-)$1	305	280	284	11.9999
UUUG	chr17:56168019-56168259(+)$1	240	95	99	11.9999
UUUG	chr12:120532918-120533193(-)$1	275	69	73	11.9999
UUUG	chr9:91931356-91931631(+)$1	275	206	210	11.9999
UUUG	chr12:58141944-58142194(-)$1	250	12	16	11.9999
uuuG	chr11:70281346-70281585(+)$1	239	35	39	11.9999
UUUG	chr4:39455727-39455946(-)$1	219	184	188	11.9999
UUUG	chr1:32799689-32799966(-)$1	277	108	112	11.9999
UUUG	chr22:38349636-38349908(+)$1	272	102	106	11.9999
UUUG	chr11:67202622-67202916(+)$1	294	265	269	11.9999
UUUG	chr5:1815880-1816131(+)$1	251	34	38	11.9999
UUUG	chr1:113213985-113214231(+)$1	246	57	61	11.9999
UUUG	chr3:141644413-141644688(+)$1	275	90	94	11.9999
UUUG	chr12:54066258-54066491(-)$1	233	111	115	11.9999
UUUG	chrX:153576832-153577093(-)$1	261	78	82	11.9999
UUUG	chr2:55200068-55200349(-)$1	281	106	110	11.9999
UUUG	chr11:70281279-70281524(+)$1	245	48	52	11.9999
UUUG	chr1:20978646-20978955(-)$1	309	150	154	11.9999
UUUG	chr6:160526854-160527107(+)$1	253	20	24	11.9999
UUUG	chr12:109039216-109039477(-)$1	261	89	93	11.9999
UUUG	chr1:990333-990580(+)$1	247	70	74	11.9999
UUUG	chr5:43291032-43291283(-)$1	251	221	225	11.9999
UUUG	chr19:46318626-46318898(-)$1	272	156	160	11.9999
UUUG	chr15:79189845-79190103(+)$1	258	21	25	11.9999
UUUG	chrX:71492374-71492647(-)$1	273	155	159	11.9999
UUUG	chr4:39456052-39456311(-)$1	259	46	50	11.9999

#otherMatches

#Struct PSSM
ffff	chr18:43664028-43664346(-)$1	318	87	91	11.9999
cc[c	chr19:17972001-17972218(+)$1	217	178	182	11.9999
HHH}	chr17:38974423-38974688(-)$1	265	198	202	11.9999
mddd	chr11:46765322-46765602(-)$1	280	181	185	11.9999
====	chr1:1717342-1717586(-)$1	244	11	15	11.9999
:EEE	chr11:59573607-59573933(-)$1	326	0	4	11.9999
MIII	chr3:179342020-179342310(+)$1	290	21	25	11.9999
e!!g	chr7:130146165-130146419(-)$1	254	5	9	11.9999
]ddd	chr19:9938901-9939169(+)$1	268	66	70	11.9999
====	chrX:106893696-106893983(+)$1	287	193	197	11.9999
"""e	chr10:70744604-70744850(+)$1	246	21	25	11.9999
gggg	chr22:41368434-41368752(+)$1	318	33	37	11.9999
::::	chr17:41154788-41155044(+)$1	256	1	5	11.9999
D:::	chr5:177022803-177023066(+)$1	263	108	112	11.9999
###d	chrX:153609263-153609529(+)$1	266	231	235	11.9999
lllc	chr11:47605940-47606203(+)$1	263	178	182	11.9999
QQQQ	chr17:46698538-46698811(-)$1	273	30	34	11.9999
&&&&	chr5:137088380-137088621(-)$1	241	6	10	11.9999
::::	chr16:83842831-83843130(+)$1	299	256	260	11.9999
::cc	chr11:64084466-64084717(-)$1	251	79	83	11.9999
::ee	chr11:33730676-33730941(-)$1	265	3	7	11.9999
333c	chr7:100276471-100276745(+)$1	274	90	94	11.9999
::::	chr14:23795198-23795439(+)$1	241	2	6	11.9999
qqqq	chrX:153195504-153195759(-)$1	255	21	25	11.9999
ddd3	chr8:101715365-101715581(-)$1	216	121	125	11.9999
gggg	chr2:65496331-65496623(+)$1	292	93	97	11.9999
gggg	chr17:36918562-36918843(+)$1	281	74	78	11.9999
dddd	chrX:102471941-102472188(+)$1	247	188	192	11.9999
::::	chr1:226548745-226548988(-)$1	243	4	8	11.9999
::::	chr17:40465253-40465501(-)$1	248	76	80	11.9999
gggg	chr1:150280606-150280880(+)$1	274	116	120	11.9999
gggg	chr16:31202716-31202973(+)$1	257	75	79	11.9999
mmmm	chr5:179041637-179041883(-)$1	246	202	206	11.9999
GGGG	chr6:34385214-34385423(-)$1	209	108	112	11.9999
::::	chr19:1258708-1258989(+)$1	281	4	8	11.9999
e:::	chr12:110872627-110872909(-)$1	282	17	21	11.9999
gggg	chr19:42364755-42365013(+)$1	258	165	169	11.9999
333b	chr3:13358780-13359070(-)$1	290	129	133	11.9999
::::	chr19:18390472-18390752(-)$1	280	85	89	11.9999
mhhh	chr4:174252888-174253172(-)$1	284	60	64	11.9999
::::	chr17:73034879-73035153(-)$1	274	22	26	11.9999
&&&&	chr9:100689276-100689565(-)$1	289	15	19	11.9999
pppb	chr21:35275677-35275971(-)$1	294	21	25	11.9999
ddd[	chr2:55199261-55199509(-)$1	248	32	36	11.9999
::::	chr12:98995161-98995462(+)$1	301	1	5	11.9999
gggg	chr6:32083315-32083602(-)$1	287	222	226	11.9999
GGGG	chr8:101715274-101715485(-)$1	211	25	29	11.9999
%%%%	chr2:68405915-68406177(-)$1	262	52	56	11.9999
666b	chr16:70286478-70286751(-)$1	273	197	201	11.9999
JJJJ	chr7:155100324-155100566(+)$1	242	15	19	11.9999
c]dd	chr1:173457009-173457237(+)$1	228	219	223	11.9999
:::G	chr4:83345737-83345984(-)$1	247	21	25	11.9999
ddd]	chr16:723952-724206(+)$1	254	60	64	11.9999
ffll	chr1:149895225-149895530(-)$1	305	280	284	11.9999
##ee	chr17:56168019-56168259(+)$1	240	95	99	11.9999
mmmm	chr12:120532918-120533193(-)$1	275	69	73	11.9999
fff[	chr9:91931356-91931631(+)$1	275	206	210	11.9999
eeee	chr12:58141944-58142194(-)$1	250	12	16	11.9999
::::	chr11:70281346-70281585(+)$1	239	35	39	11.9999
FFFF	chr4:39455727-39455946(-)$1	219	184	188	11.9999
ssss	chr1:32799689-32799966(-)$1	277	108	112	11.9999
bb]b	chr22:38349636-38349908(+)$1	272	102	106	11.9999
FFZZ	chr11:67202622-67202916(+)$1	294	265	269	11.9999
2fff	chr5:1815880-1816131(+)$1	251	34	38	11.9999
gggg	chr1:113213985-113214231(+)$1	246	57	61	11.9999
hhhh	chr3:141644413-141644688(+)$1	275	90	94	11.9999
"""b	chr12:54066258-54066491(-)$1	233	111	115	11.9999
$$cc	chrX:153576832-153577093(-)$1	261	78	82	11.9999
gggb	chr2:55200068-55200349(-)$1	281	106	110	11.9999
c]dd	chr11:70281279-70281524(+)$1	245	48	52	11.9999
::::	chr1:20978646-20978955(-)$1	309	150	154	11.9999
h!!d	chr6:160526854-160527107(+)$1	253	20	24	11.9999
rrre	chr12:109039216-109039477(-)$1	261	89	93	11.9999
"""d	chr1:990333-990580(+)$1	247	70	74	11.9999
}BB}	chr5:43291032-43291283(-)$1	251	221	225	11.9999
c[a[	chr19:46318626-46318898(-)$1	272	156	160	11.9999
ffff	chr15:79189845-79190103(+)$1	258	21	25	11.9999
mccc	chrX:71492374-71492647(-)$1	273	155	159	11.9999
::::	chr4:39456052-39456311(-)$1	259	46	50	11.9999

#DB
((((	chr18:43664028-43664346(-)$1	1	87	91	11.9999
((.(	chr19:17972001-17972218(+)$1	1	178	182	11.9999
))).	chr17:38974423-38974688(-)$1	1	198	202	11.9999
.)))	chr11:46765322-46765602(-)$1	1	181	185	11.9999
((((	chr1:1717342-1717586(-)$1	1	11	15	11.9999
.(((	chr11:59573607-59573933(-)$1	1	0	4	11.9999
.(((	chr3:179342020-179342310(+)$1	1	21	25	11.9999
(..(	chr7:130146165-130146419(-)$1	1	5	9	11.9999
.)))	chr19:9938901-9939169(+)$1	1	66	70	11.9999
))))	chrX:106893696-106893983(+)$1	1	193	197	11.9999
...(	chr10:70744604-70744850(+)$1	1	21	25	11.9999
))))	chr22:41368434-41368752(+)$1	1	33	37	11.9999
....	chr17:41154788-41155044(+)$1	1	1	5	11.9999
)...	chr5:177022803-177023066(+)$1	1	108	112	11.9999
...(	chrX:153609263-153609529(+)$1	1	231	235	11.9999
...)	chr11:47605940-47606203(+)$1	1	178	182	11.9999
....	chr17:46698538-46698811(-)$1	1	30	34	11.9999
....	chr5:137088380-137088621(-)$1	1	6	10	11.9999
....	chr16:83842831-83843130(+)$1	1	256	260	11.9999
..((	chr11:64084466-64084717(-)$1	1	79	83	11.9999
..((	chr11:33730676-33730941(-)$1	1	3	7	11.9999
...)	chr7:100276471-100276745(+)$1	1	90	94	11.9999
....	chr14:23795198-23795439(+)$1	1	2	6	11.9999
....	chrX:153195504-153195759(-)$1	1	21	25	11.9999
))).	chr8:101715365-101715581(-)$1	1	121	125	11.9999
))))	chr2:65496331-65496623(+)$1	1	93	97	11.9999
))))	chr17:36918562-36918843(+)$1	1	74	78	11.9999
))))	chrX:102471941-102472188(+)$1	1	188	192	11.9999
....	chr1:226548745-226548988(-)$1	1	4	8	11.9999
....	chr17:40465253-40465501(-)$1	1	76	80	11.9999
))))	chr1:150280606-150280880(+)$1	1	116	120	11.9999
))))	chr16:31202716-31202973(+)$1	1	75	79	11.9999
....	chr5:179041637-179041883(-)$1	1	202	206	11.9999
))))	chr6:34385214-34385423(-)$1	1	108	112	11.9999
....	chr19:1258708-1258989(+)$1	1	4	8	11.9999
)...	chr12:110872627-110872909(-)$1	1	17	21	11.9999
))))	chr19:42364755-42365013(+)$1	1	165	169	11.9999
...)	chr3:13358780-13359070(-)$1	1	129	133	11.9999
....	chr19:18390472-18390752(-)$1	1	85	89	11.9999
.)))	chr4:174252888-174253172(-)$1	1	60	64	11.9999
....	chr17:73034879-73035153(-)$1	1	22	26	11.9999
....	chr9:100689276-100689565(-)$1	1	15	19	11.9999
...)	chr21:35275677-35275971(-)$1	1	21	25	11.9999
(((.	chr2:55199261-55199509(-)$1	1	32	36	11.9999
....	chr12:98995161-98995462(+)$1	1	1	5	11.9999
((((	chr6:32083315-32083602(-)$1	1	222	226	11.9999
((((	chr8:101715274-101715485(-)$1	1	25	29	11.9999
....	chr2:68405915-68406177(-)$1	1	52	56	11.9999
...)	chr16:70286478-70286751(-)$1	1	197	201	11.9999
((((	chr7:155100324-155100566(+)$1	1	15	19	11.9999
).))	chr1:173457009-173457237(+)$1	1	219	223	11.9999
...(	chr4:83345737-83345984(-)$1	1	21	25	11.9999
))).	chr16:723952-724206(+)$1	1	60	64	11.9999
((..	chr1:149895225-149895530(-)$1	1	280	284	11.9999
..((	chr17:56168019-56168259(+)$1	1	95	99	11.9999
....	chr12:120532918-120533193(-)$1	1	69	73	11.9999
(((.	chr9:91931356-91931631(+)$1	1	206	210	11.9999
))))	chr12:58141944-58142194(-)$1	1	12	16	11.9999
....	chr11:70281346-70281585(+)$1	1	35	39	11.9999
))))	chr4:39455727-39455946(-)$1	1	184	188	11.9999
....	chr1:32799689-32799966(-)$1	1	108	112	11.9999
)).)	chr22:38349636-38349908(+)$1	1	102	106	11.9999
))..	chr11:67202622-67202916(+)$1	1	265	269	11.9999
.)))	chr5:1815880-1816131(+)$1	1	34	38	11.9999
))))	chr1:113213985-113214231(+)$1	1	57	61	11.9999
))))	chr3:141644413-141644688(+)$1	1	90	94	11.9999
...(	chr12:54066258-54066491(-)$1	1	111	115	11.9999
..((	chrX:153576832-153577093(-)$1	1	78	82	11.9999
)))(	chr2:55200068-55200349(-)$1	1	106	110	11.9999
).))	chr11:70281279-70281524(+)$1	1	48	52	11.9999
....	chr1:20978646-20978955(-)$1	1	150	154	11.9999
(..(	chr6:160526854-160527107(+)$1	1	20	24	11.9999
...)	chr12:109039216-109039477(-)$1	1	89	93	11.9999
...(	chr1:990333-990580(+)$1	1	70	74	11.9999
.)).	chr5:43291032-43291283(-)$1	1	221	225	11.9999
(.(.	chr19:46318626-46318898(-)$1	1	156	160	11.9999
))))	chr15:79189845-79190103(+)$1	1	21	25	11.9999
.)))	chrX:71492374-71492647(-)$1	1	155	159	11.9999
....	chr4:39456052-39456311(-)$1	1	46	50	11.9999

#PSSM
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
G : 0.94	g : 0.05	

#score	947.9999999999998
#seq	79
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_transcript_m3_run1.nuc.txt

#NT
CUG	chr3:172114859-172115111(+)$1	252	88	91	9.0000
CUG	chr20:4680681-4680939(+)$1	258	11	14	9.0000
CUG	chr12:57593559-57593790(+)$1	231	21	24	9.0000
CUG	chr14:31569804-31570056(-)$1	252	76	79	9.0000
CUG	chr10:7788561-7788766(+)$1	205	51	54	9.0000
CUG	chr17:38512749-38513050(+)$1	301	2	5	9.0000
CUG	chr20:48744438-48744664(-)$1	226	73	76	9.0000
CUG	chr12:116398787-116399077(-)$1	290	28	31	9.0000
CUG	chr8:131124262-131124594(-)$1	332	19	22	9.0000
CUG	chr1:27100932-27101170(+)$1	238	188	191	9.0000
CUG	chr2:216271749-216271951(-)$1	202	3	6	9.0000
CUG	chr17:29654602-29654921(+)$1	319	18	21	9.0000
CUG	chr6:142766212-142766441(+)$1	229	6	9	9.0000
CUG	chr8:12940830-12941078(-)$1	248	37	40	9.0000
CUG	chr7:94297274-94297487(+)$1	213	58	61	9.0000
CUG	chr21:18940360-18940608(+)$1	248	11	14	9.0000
CUG	chr12:63039533-63039797(-)$1	264	9	12	9.0000
CUG	chr3:172020590-172020851(+)$1	261	35	38	9.0000
cug	chr19:18881797-18882047(+)$1	250	104	107	9.0000
CUG	chr11:9459308-9459572(+)$1	264	28	31	9.0000
CUG	chr9:100777767-100778037(+)$1	270	11	14	9.0000
CUG	chr16:1370370-1370621(+)$1	251	30	33	9.0000
CUG	chr12:46581270-46581541(-)$1	271	5	8	9.0000
CUG	chr11:102267981-102268209(-)$1	228	113	116	9.0000
CUG	chr7:94295628-94295936(+)$1	308	1	4	9.0000
CUG	chr14:23240744-23240990(+)$1	246	1	4	9.0000
CUG	chr12:113826939-113827227(+)$1	288	70	73	9.0000
CUG	chr1:2201637-2201900(+)$1	263	29	32	9.0000
CUG	chr12:113826603-113826852(+)$1	249	45	48	9.0000
CUG	chr1:8418154-8418399(-)$1	245	29	32	9.0000
CUG	chr12:53856166-53856432(+)$1	266	23	26	9.0000
CUG	chr14:75248482-75248775(+)$1	293	14	17	9.0000
CUG	chr1:171548950-171549183(+)$1	233	58	61	9.0000
cug	chr16:52473147-52473396(-)$1	249	44	47	9.0000
CUG	chr5:175777567-175777830(-)$1	263	1	4	9.0000
CUG	chr2:10923716-10923957(-)$1	241	169	172	9.0000
CUG	chr21:44268641-44268907(-)$1	266	16	19	9.0000
CUG	chr22:38274008-38274247(+)$1	239	6	9	9.0000
CUG	chr16:30735259-30735501(+)$1	242	28	31	9.0000
CUG	chrX:71492483-71492705(-)$1	222	63	66	9.0000
CUG	chr1:150938438-150938711(-)$1	273	5	8	9.0000
CUG	chr2:21234285-21234500(-)$1	215	0	3	9.0000
CUG	chr10:102744726-102744973(+)$1	247	17	20	9.0000
CUG	chr17:4638510-4638781(-)$1	271	86	89	9.0000
CUG	chr1:204373792-204374063(-)$1	271	13	16	9.0000
cug	chr5:179156437-179156706(+)$1	269	67	70	9.0000
CUG	chr6:44222498-44222778(-)$1	280	9	12	9.0000
CUG	chr5:138629749-138630040(+)$1	291	45	48	9.0000
CUG	chr20:35412575-35412868(-)$1	293	0	3	9.0000
CUG	chr9:99113343-99113554(-)$1	211	6	9	9.0000
CUG	chr7:103123268-103123504(-)$1	236	116	119	9.0000
CUG	chr5:96103535-96103803(+)$1	268	36	39	9.0000
CUG	chr19:1300681-1300968(+)$1	287	20	23	9.0000
CUG	chr14:21899105-21899362(-)$1	257	2	5	9.0000
CUG	chrX:118377956-118378226(+)$1	270	128	131	9.0000
CUG	chr17:70535146-70535414(-)$1	268	0	3	9.0000
CUG	chr10:28970184-28970511(+)$1	327	18	21	9.0000
CUG	chr2:99236378-99236632(-)$1	254	2	5	9.0000
CUG	chr17:70550364-70550593(-)$1	229	8	11	9.0000
cug	chr20:43033349-43033683(+)$1	334	18	21	9.0000
CUG	chr19:33693839-33694121(+)$1	282	5	8	9.0000
CUG	chr14:89628294-89628561(-)$1	267	42	45	9.0000
CUG	chr11:65211471-65211708(+)$1	237	48	51	9.0000
cug	chr20:62901198-62901476(+)$1	278	2	5	9.0000
cug	chr2:236420530-236420877(+)$1	347	121	124	9.0000
CUG	chr2:216236795-216237004(-)$1	209	8	11	9.0000
CUG	chr2:69746089-69746354(-)$1	265	53	56	9.0000
CUG	chr6:43322459-43322775(-)$1	316	12	15	9.0000
CUG	chr11:61554414-61554674(+)$1	260	45	48	9.0000
cug	chr7:157612310-157612563(-)$1	253	5	8	9.0000
CUG	chr12:7248626-7248974(-)$1	348	9	12	9.0000
CUG	chr1:41502972-41503232(-)$1	260	8	11	9.0000
cug	chr2:3299994-3300264(-)$1	270	48	51	9.0000
CUG	chr1:114963999-114964289(-)$1	290	50	53	9.0000
CUG	chr19:43011847-43012127(-)$1	280	66	69	9.0000
CUG	chrX:131507764-131508016(-)$1	252	26	29	9.0000
CUG	chr19:43014940-43015173(-)$1	233	21	24	9.0000
CUG	chr14:32623774-32624040(+)$1	266	103	106	9.0000
CUG	chr21:45402532-45402786(+)$1	254	40	43	9.0000
CUG	chr12:57005695-57006008(-)$1	313	11	14	9.0000
CUG	chr2:216271751-216271980(-)$1	229	32	35	9.0000
CUG	chrX:118602412-118602662(+)$1	250	39	42	9.0000
cug	chr17:7078544-7078788(-)$1	244	61	64	9.0000
CUG	chr6:43752273-43752545(+)$1	272	88	91	9.0000
CUG	chr10:82278830-82279057(+)$1	227	17	20	9.0000
cug	chr2:47130027-47130290(-)$1	263	11	14	9.0000
CUG	chr19:35493971-35494229(+)$1	258	33	36	9.0000
cug	chr14:103571710-103571976(+)$1	266	52	55	9.0000
CUG	chr11:60617996-60618243(+)$1	247	5	8	9.0000
CUG	chr17:74560784-74561008(+)$1	224	21	24	9.0000
CUG	chr13:99104817-99105067(-)$1	250	8	11	9.0000
cug	chr19:47481849-47482147(+)$1	298	33	36	9.0000
CUG	chr3:49571683-49571928(+)$1	245	81	84	9.0000
CUG	chr20:43135431-43135696(-)$1	265	64	67	9.0000

#otherMatches

#Struct PSSM
ddc	chr16:69727300-69727529(+)$1	229	20	23	9.0000
=="	chr3:172114859-172115111(+)$1	252	88	91	9.0000
dxx	chr20:4680681-4680939(+)$1	258	11	14	9.0000
III	chr12:57593559-57593790(+)$1	231	21	24	9.0000
dd2	chr14:31569804-31570056(-)$1	252	76	79	9.0000
ddd	chr10:7788561-7788766(+)$1	205	51	54	9.0000
GGG	chr17:38512749-38513050(+)$1	301	2	5	9.0000
[bb	chr20:48744438-48744664(-)$1	226	73	76	9.0000
%dd	chr12:116398787-116399077(-)$1	290	28	31	9.0000
CCC	chr8:131124262-131124594(-)$1	332	19	22	9.0000
:ee	chr1:27100932-27101170(+)$1	238	188	191	9.0000
EEE	chr2:216271749-216271951(-)$1	202	3	6	9.0000
HHH	chr17:29654602-29654921(+)$1	319	18	21	9.0000
ggg	chr6:142766212-142766441(+)$1	229	6	9	9.0000
ggg	chr8:12940830-12941078(-)$1	248	37	40	9.0000
hhh	chr7:94297274-94297487(+)$1	213	58	61	9.0000
llf	chr21:18940360-18940608(+)$1	248	11	14	9.0000
eee	chr12:63039533-63039797(-)$1	264	9	12	9.0000
bb[	chr3:172020590-172020851(+)$1	261	35	38	9.0000
::F	chr19:18881797-18882047(+)$1	250	104	107	9.0000
yyy	chr11:9459308-9459572(+)$1	264	28	31	9.0000
hhh	chr9:100777767-100778037(+)$1	270	11	14	9.0000
eee	chr16:1370370-1370621(+)$1	251	30	33	9.0000
EEE	chr12:46581270-46581541(-)$1	271	5	8	9.0000
c44	chr11:102267981-102268209(-)$1	228	113	116	9.0000
ccc	chr7:94295628-94295936(+)$1	308	1	4	9.0000
:CC	chr14:23240744-23240990(+)$1	246	1	4	9.0000
hhh	chr12:113826939-113827227(+)$1	288	70	73	9.0000
{FF	chr1:2201637-2201900(+)$1	263	29	32	9.0000
pdd	chr12:113826603-113826852(+)$1	249	45	48	9.0000
ffm	chr1:8418154-8418399(-)$1	245	29	32	9.0000
eee	chr12:53856166-53856432(+)$1	266	23	26	9.0000
OCC	chr14:75248482-75248775(+)$1	293	14	17	9.0000
mdd	chr1:171548950-171549183(+)$1	233	58	61	9.0000
hhh	chr16:52473147-52473396(-)$1	249	44	47	9.0000
:EE	chr5:175777567-175777830(-)$1	263	1	4	9.0000
ccc	chr2:10923716-10923957(-)$1	241	169	172	9.0000
HHO	chr21:44268641-44268907(-)$1	266	16	19	9.0000
EKK	chr22:38274008-38274247(+)$1	239	6	9	9.0000
#ee	chr16:30735259-30735501(+)$1	242	28	31	9.0000
ddd	chrX:71492483-71492705(-)$1	222	63	66	9.0000
FLL	chr1:150938438-150938711(-)$1	273	5	8	9.0000
:dd	chr2:21234285-21234500(-)$1	215	0	3	9.0000
KDD	chr10:102744726-102744973(+)$1	247	17	20	9.0000
eeF	chr17:4638510-4638781(-)$1	271	86	89	9.0000
{JJ	chr1:204373792-204374063(-)$1	271	13	16	9.0000
ssc	chr5:179156437-179156706(+)$1	269	67	70	9.0000
[ee	chr6:44222498-44222778(-)$1	280	9	12	9.0000
bb3	chr5:138629749-138630040(+)$1	291	45	48	9.0000
:FF	chr20:35412575-35412868(-)$1	293	0	3	9.0000
:dd	chr9:99113343-99113554(-)$1	211	6	9	9.0000
[dd	chr7:103123268-103123504(-)$1	236	116	119	9.0000
{DD	chr5:96103535-96103803(+)$1	268	36	39	9.0000
ddd	chr19:1300681-1300968(+)$1	287	20	23	9.0000
ccb	chr14:21899105-21899362(-)$1	257	2	5	9.0000
::g	chrX:118377956-118378226(+)$1	270	128	131	9.0000
::d	chr17:70535146-70535414(-)$1	268	0	3	9.0000
ddd	chr10:28970184-28970511(+)$1	327	18	21	9.0000
:EE	chr2:99236378-99236632(-)$1	254	2	5	9.0000
dnn	chr17:70550364-70550593(-)$1	229	8	11	9.0000
nnn	chr20:43033349-43033683(+)$1	334	18	21	9.0000
KDD	chr19:33693839-33694121(+)$1	282	5	8	9.0000
EEE	chr14:89628294-89628561(-)$1	267	42	45	9.0000
ddd	chr11:65211471-65211708(+)$1	237	48	51	9.0000
cc[	chr20:62901198-62901476(+)$1	278	2	5	9.0000
HHH	chr2:236420530-236420877(+)$1	347	121	124	9.0000
GGG	chr2:216236795-216237004(-)$1	209	8	11	9.0000
DDD	chr2:69746089-69746354(-)$1	265	53	56	9.0000
ccc	chr6:43322459-43322775(-)$1	316	12	15	9.0000
LLL	chr11:61554414-61554674(+)$1	260	45	48	9.0000
B{D	chr7:157612310-157612563(-)$1	253	5	8	9.0000
:::	chr12:7248626-7248974(-)$1	348	9	12	9.0000
iiq	chr1:41502972-41503232(-)$1	260	8	11	9.0000
ccq	chr2:3299994-3300264(-)$1	270	48	51	9.0000
{CC	chr1:114963999-114964289(-)$1	290	50	53	9.0000
E{E	chr19:43011847-43012127(-)$1	280	66	69	9.0000
GGG	chrX:131507764-131508016(-)$1	252	26	29	9.0000
:::	chr19:43014940-43015173(-)$1	233	21	24	9.0000
>dd	chr14:32623774-32624040(+)$1	266	103	106	9.0000
[bb	chr21:45402532-45402786(+)$1	254	40	43	9.0000
EEE	chr12:57005695-57006008(-)$1	313	11	14	9.0000
EEE	chr2:216271751-216271980(-)$1	229	32	35	9.0000
::d	chrX:118602412-118602662(+)$1	250	39	42	9.0000
dd6	chr17:7078544-7078788(-)$1	244	61	64	9.0000
ccc	chr6:43752273-43752545(+)$1	272	88	91	9.0000
qqq	chr10:82278830-82279057(+)$1	227	17	20	9.0000
rrc	chr2:47130027-47130290(-)$1	263	11	14	9.0000
DD{	chr19:35493971-35494229(+)$1	258	33	36	9.0000
KKC	chr14:103571710-103571976(+)$1	266	52	55	9.0000
[cc	chr11:60617996-60618243(+)$1	247	5	8	9.0000
bb"	chr17:74560784-74561008(+)$1	224	21	24	9.0000
MMD	chr13:99104817-99105067(-)$1	250	8	11	9.0000
BBL	chr19:47481849-47482147(+)$1	298	33	36	9.0000
ppp	chr3:49571683-49571928(+)$1	245	81	84	9.0000
:::	chr20:43135431-43135696(-)$1	265	64	67	9.0000

#DB
(((	chr16:69727300-69727529(+)$1	1	20	23	9.0000
((.	chr3:172114859-172115111(+)$1	1	88	91	9.0000
(..	chr20:4680681-4680939(+)$1	1	11	14	9.0000
(((	chr12:57593559-57593790(+)$1	1	21	24	9.0000
)).	chr14:31569804-31570056(-)$1	1	76	79	9.0000
)))	chr10:7788561-7788766(+)$1	1	51	54	9.0000
(((	chr17:38512749-38513050(+)$1	1	2	5	9.0000
.((	chr20:48744438-48744664(-)$1	1	73	76	9.0000
.((	chr12:116398787-116399077(-)$1	1	28	31	9.0000
(((	chr8:131124262-131124594(-)$1	1	19	22	9.0000
.((	chr1:27100932-27101170(+)$1	1	188	191	9.0000
(((	chr2:216271749-216271951(-)$1	1	3	6	9.0000
(((	chr17:29654602-29654921(+)$1	1	18	21	9.0000
(((	chr6:142766212-142766441(+)$1	1	6	9	9.0000
(((	chr8:12940830-12941078(-)$1	1	37	40	9.0000
(((	chr7:94297274-94297487(+)$1	1	58	61	9.0000
..)	chr21:18940360-18940608(+)$1	1	11	14	9.0000
(((	chr12:63039533-63039797(-)$1	1	9	12	9.0000
((.	chr3:172020590-172020851(+)$1	1	35	38	9.0000
..(	chr19:18881797-18882047(+)$1	1	104	107	9.0000
...	chr11:9459308-9459572(+)$1	1	28	31	9.0000
(((	chr9:100777767-100778037(+)$1	1	11	14	9.0000
(((	chr16:1370370-1370621(+)$1	1	30	33	9.0000
(((	chr12:46581270-46581541(-)$1	1	5	8	9.0000
)..	chr11:102267981-102268209(-)$1	1	113	116	9.0000
(((	chr7:94295628-94295936(+)$1	1	1	4	9.0000
.((	chr14:23240744-23240990(+)$1	1	1	4	9.0000
(((	chr12:113826939-113827227(+)$1	1	70	73	9.0000
.((	chr1:2201637-2201900(+)$1	1	29	32	9.0000
.))	chr12:113826603-113826852(+)$1	1	45	48	9.0000
((.	chr1:8418154-8418399(-)$1	1	29	32	9.0000
)))	chr12:53856166-53856432(+)$1	1	23	26	9.0000
.((	chr14:75248482-75248775(+)$1	1	14	17	9.0000
.))	chr1:171548950-171549183(+)$1	1	58	61	9.0000
(((	chr16:52473147-52473396(-)$1	1	44	47	9.0000
.((	chr5:175777567-175777830(-)$1	1	1	4	9.0000
)))	chr2:10923716-10923957(-)$1	1	169	172	9.0000
((.	chr21:44268641-44268907(-)$1	1	16	19	9.0000
(..	chr22:38274008-38274247(+)$1	1	6	9	9.0000
.((	chr16:30735259-30735501(+)$1	1	28	31	9.0000
)))	chrX:71492483-71492705(-)$1	1	63	66	9.0000
(..	chr1:150938438-150938711(-)$1	1	5	8	9.0000
.((	chr2:21234285-21234500(-)$1	1	0	3	9.0000
.((	chr10:102744726-102744973(+)$1	1	17	20	9.0000
))(	chr17:4638510-4638781(-)$1	1	86	89	9.0000
.((	chr1:204373792-204374063(-)$1	1	13	16	9.0000
..)	chr5:179156437-179156706(+)$1	1	67	70	9.0000
.((	chr6:44222498-44222778(-)$1	1	9	12	9.0000
)).	chr5:138629749-138630040(+)$1	1	45	48	9.0000
.((	chr20:35412575-35412868(-)$1	1	0	3	9.0000
.((	chr9:99113343-99113554(-)$1	1	6	9	9.0000
.((	chr7:103123268-103123504(-)$1	1	116	119	9.0000
.((	chr5:96103535-96103803(+)$1	1	36	39	9.0000
(((	chr19:1300681-1300968(+)$1	1	20	23	9.0000
(((	chr14:21899105-21899362(-)$1	1	2	5	9.0000
..(	chrX:118377956-118378226(+)$1	1	128	131	9.0000
..(	chr17:70535146-70535414(-)$1	1	0	3	9.0000
(((	chr10:28970184-28970511(+)$1	1	18	21	9.0000
.((	chr2:99236378-99236632(-)$1	1	2	5	9.0000
(..	chr17:70550364-70550593(-)$1	1	8	11	9.0000
...	chr20:43033349-43033683(+)$1	1	18	21	9.0000
.((	chr19:33693839-33694121(+)$1	1	5	8	9.0000
(((	chr14:89628294-89628561(-)$1	1	42	45	9.0000
(((	chr11:65211471-65211708(+)$1	1	48	51	9.0000
((.	chr20:62901198-62901476(+)$1	1	2	5	9.0000
(((	chr2:236420530-236420877(+)$1	1	121	124	9.0000
(((	chr2:216236795-216237004(-)$1	1	8	11	9.0000
(((	chr2:69746089-69746354(-)$1	1	53	56	9.0000
(((	chr6:43322459-43322775(-)$1	1	12	15	9.0000
...	chr11:61554414-61554674(+)$1	1	45	48	9.0000
(.(	chr7:157612310-157612563(-)$1	1	5	8	9.0000
...	chr12:7248626-7248974(-)$1	1	9	12	9.0000
((.	chr1:41502972-41503232(-)$1	1	8	11	9.0000
((.	chr2:3299994-3300264(-)$1	1	48	51	9.0000
.((	chr1:114963999-114964289(-)$1	1	50	53	9.0000
(.(	chr19:43011847-43012127(-)$1	1	66	69	9.0000
(((	chrX:131507764-131508016(-)$1	1	26	29	9.0000
...	chr19:43014940-43015173(-)$1	1	21	24	9.0000
.))	chr14:32623774-32624040(+)$1	1	103	106	9.0000
.((	chr21:45402532-45402786(+)$1	1	40	43	9.0000
(((	chr12:57005695-57006008(-)$1	1	11	14	9.0000
(((	chr2:216271751-216271980(-)$1	1	32	35	9.0000
..(	chrX:118602412-118602662(+)$1	1	39	42	9.0000
)).	chr17:7078544-7078788(-)$1	1	61	64	9.0000
)))	chr6:43752273-43752545(+)$1	1	88	91	9.0000
...	chr10:82278830-82279057(+)$1	1	17	20	9.0000
..)	chr2:47130027-47130290(-)$1	1	11	14	9.0000
((.	chr19:35493971-35494229(+)$1	1	33	36	9.0000
..(	chr14:103571710-103571976(+)$1	1	52	55	9.0000
.((	chr11:60617996-60618243(+)$1	1	5	8	9.0000
((.	chr17:74560784-74561008(+)$1	1	21	24	9.0000
..(	chr13:99104817-99105067(-)$1	1	8	11	9.0000
((.	chr19:47481849-47482147(+)$1	1	33	36	9.0000
...	chr3:49571683-49571928(+)$1	1	81	84	9.0000
...	chr20:43135431-43135696(-)$1	1	64	67	9.0000

#PSSM
C : 0.87	c : 0.12	
U : 0.87	u : 0.12	
G : 0.87	g : 0.12	

#score	855.0000000000001
#seq	95
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_CDS_m2_run2.nuc.txt

#NT
UGUUUUCCUU	chr1:27092591-27092848(+)$1	257	7	17	15.6140
UUUGUUUUUU	chr6:15468661-15468915(+)$1	254	12	22	15.0000
UUUUUUCUUU	chrX:40569229-40569488(-)$1	259	95	105	22.1929
UAGUUUCUUU	chr16:23505560-23505840(-)$1	280	92	102	15.5263
UCUUUUCUCU	chr22:22142961-22143196(-)$1	235	76	86	15.4385
UUUCUUCUUU	chr4:74043118-74043437(-)$1	319	2	12	18.4210
UUUUUGCUUU	chr2:113410374-113410601(+)$1	227	77	87	17.6315
UUUUUGCUUU	chr2:113410343-113410574(+)$1	231	108	118	17.6315
UUGUUUAUUU	chr1:31741942-31742197(-)$1	255	85	95	14.8245
UGUCUUCUUU	chr7:23561312-23561567(-)$1	255	93	103	15.5263
UUUUUUCUUU	chr3:142740178-142740465(+)$1	287	117	127	22.1929
uuauuuauuu	chr10:27412465-27412725(-)$1	260	21	31	14.8245
UAUUUUCUUC	chr22:45726365-45726634(+)$1	269	51	61	15.2631
UUUGUUCUCU	chr20:43138466-43138770(-)$1	304	79	89	14.6491
UUUUAUCUUC	chr15:50867202-50867447(-)$1	245	9	19	14.0350
GUUUUUCUCU	chr10:121336109-121336373(-)$1	264	26	36	13.9473
UUAAUUCUUU	chr17:57917011-57917260(+)$1	249	4	14	14.7368
UUUGUUGUUU	chr5:133725803-133726073(+)$1	270	10	20	15.0877
UUUUCUGUUU	chr6:28879360-28879606(-)$1	246	140	150	14.7368
uuuuuucuuu	chr11:73429776-73430052(-)$1	276	56	66	22.1929
UCUUUUAUUU	chrX:13337023-13337269(+)$1	246	179	189	15.7017
UUGUUUUUUU	chr17:40632569-40632842(+)$1	273	91	101	14.9122
UCUUUUCUUU	chr12:44124356-44124619(-)$1	263	99	109	19.3859
UGUUUUGUUU	chr1:167984915-167985175(+)$1	260	2	12	15.7894
UAUUUUCUUU	chr18:55226356-55226628(-)$1	272	86	96	19.2105
UUUUUACUUU	chr13:33095445-33095712(-)$1	267	69	79	17.5438
CUUGUUCUUU	chr3:37369798-37370048(+)$1	250	61	71	14.6491
UUUUUUCCUU	chr8:30958252-30958522(+)$1	270	59	69	18.5087
UGUUUUCAUU	chr7:148508660-148508910(-)$1	250	16	26	15.0877
UUUUUUCCUU	chr6:32943917-32944167(+)$1	250	91	101	18.5087
UCUUUUCCUU	chr7:135098229-135098468(-)$1	239	76	86	15.7017
UUCUUUCUCU	chr6:168313948-168314234(+)$1	286	87	97	14.4736
UCUUUUCUUU	chr1:173953621-173953874(-)$1	253	97	107	19.3859
CUUUUUGUUU	chr1:226258948-226259184(+)$1	236	22	32	14.7368
UAUUUUCUUU	chr12:21661180-21661463(+)$1	283	117	127	19.2105
UGUUUUUUUU	chrX:48435301-48435545(+)$1	244	93	103	15.7017
UUUAUUCUUC	chr2:209108192-209108460(-)$1	268	87	97	14.4736
UUGUUUCUUC	chr4:79771964-79772210(+)$1	246	139	149	14.5614
UUUUCUCCUU	chr10:135214920-135215179(+)$1	259	93	103	14.5614
UUUAUUCUUC	chr9:95033802-95034065(-)$1	263	96	106	14.4736
UUCUUUCUCU	chr1:27105396-27105653(+)$1	257	101	111	14.4736
UCUUUUUUUU	chr1:36411178-36411430(+)$1	252	87	97	15.7894
CUAUUUCUUU	chr14:21463204-21463472(+)$1	268	8	18	14.5614
UUUUCUCUUU	chr2:37111091-37111354(-)$1	263	92	102	18.2456
CUUUUUCCUU	chr6:143486107-143486379(+)$1	272	97	107	14.5614
UUACUUCUUU	chr11:95560841-95561097(+)$1	256	78	88	14.7368
UAUGUUCUUU	chr1:29391370-29391627(+)$1	257	68	78	15.6140
AUUUUUCUUU	chr7:140482813-140483078(-)$1	265	99	109	17.8947
UCUUUUGUUU	chr11:9309172-9309416(-)$1	244	48	58	15.8771
UUCUCUCUUU	chr5:167922174-167922448(+)$1	274	89	99	14.4736
UUUUCUCUUU	chr1:158581033-158581288(-)$1	255	86	96	18.2456
UUUUUUCUUU	chr14:103148119-103148377(+)$1	258	94	104	22.1929
UUUUUUCUUC	chr5:159520934-159521190(-)$1	256	94	104	18.2456
UUUUAUCUUU	chr6:163986861-163987115(+)$1	254	104	114	17.9824
UGUUUUCUCU	chr7:150066644-150066908(+)$1	264	92	102	15.3508
UUUUUUCCUU	chr2:32429558-32429812(+)$1	254	86	96	18.5087

#otherMatches

#Struct PSSM
::::::::::	chr6:168325457-168325729(+)$1	272	112	122	18.2456
::::::::::	chr1:27092591-27092848(+)$1	257	7	17	15.6140
:::::::III	chr6:15468661-15468915(+)$1	254	12	22	15.0000
iiiiiii22e	chrX:40569229-40569488(-)$1	259	95	105	22.1929
!!bbqqqqqq	chr16:23505560-23505840(-)$1	280	92	102	15.5263
e+++++++++	chr22:22142961-22143196(-)$1	235	76	86	15.4385
::::::::::	chr4:74043118-74043437(-)$1	319	2	12	18.4210
^^^^^^^^^^	chr2:113410374-113410601(+)$1	227	77	87	17.6315
ffff''''''	chr2:113410343-113410574(+)$1	231	108	118	17.6315
[eeeee[fff	chr1:31741942-31742197(-)$1	255	85	95	14.8245
bb]eeeee::	chr7:23561312-23561567(-)$1	255	93	103	15.5263
^^^^^^^^^e	chr3:142740178-142740465(+)$1	287	117	127	22.1929
mmhhhhhhhh	chr10:27412465-27412725(-)$1	260	21	31	14.8245
:::::eeeee	chr22:45726365-45726634(+)$1	269	51	61	15.2631
mmhhhhhhhh	chr20:43138466-43138770(-)$1	304	79	89	14.6491
JJJJJJJJJJ	chr15:50867202-50867447(-)$1	245	9	19	14.0350
MMMDDDDLLL	chr10:121336109-121336373(-)$1	264	26	36	13.9473
:::::::::D	chr17:57917011-57917260(+)$1	249	4	14	14.7368
MMMHHHHHHH	chr5:133725803-133726073(+)$1	270	10	20	15.0877
ddd22ccc]=	chr6:28879360-28879606(-)$1	246	140	150	14.7368
::::::::::	chr11:73429776-73430052(-)$1	276	56	66	22.1929
ppppgggggg	chrX:13337023-13337269(+)$1	246	179	189	15.7017
e[ggggggg#	chr17:40632569-40632842(+)$1	273	91	101	14.9122
ddddd+++++	chr12:44124356-44124619(-)$1	263	99	109	19.3859
DD:dddd[ff	chr1:167984915-167985175(+)$1	260	2	12	15.7894
::::::::::	chr18:55226356-55226628(-)$1	272	86	96	19.2105
eeqqqqqqqq	chr13:33095445-33095712(-)$1	267	69	79	17.5438
JJJJJJJJJJ	chr3:37369798-37370048(+)$1	250	61	71	14.6491
e22eeeee::	chr8:30958252-30958522(+)$1	270	59	69	18.5087
BBKKEEEEEF	chr7:148508660-148508910(-)$1	250	16	26	15.0877
hhhhhhhh::	chr6:32943917-32944167(+)$1	250	91	101	18.5087
ee::::::::	chr7:135098229-135098468(-)$1	239	76	86	15.7017
::::::::::	chr6:168313948-168314234(+)$1	286	87	97	14.4736
nnnnnccc::	chr1:173953621-173953874(-)$1	253	97	107	19.3859
hhhhh:::::	chr1:226258948-226259184(+)$1	236	22	32	14.7368
eee:hhhhhh	chr12:21661180-21661463(+)$1	283	117	127	19.2105
hhhh:::eee	chrX:48435301-48435545(+)$1	244	93	103	15.7017
eeee22ffff	chr2:209108192-209108460(-)$1	268	87	97	14.4736
::::::::::	chr4:79771964-79772210(+)$1	246	139	149	14.5614
:::::::ggg	chr10:135214920-135215179(+)$1	259	93	103	14.5614
##bb[fffff	chr9:95033802-95034065(-)$1	263	96	106	14.4736
::::::::::	chr1:27105396-27105653(+)$1	257	101	111	14.4736
WWWWWWWWWW	chr1:36411178-36411430(+)$1	252	87	97	15.7894
dddqqqqqqq	chr14:21463204-21463472(+)$1	268	8	18	14.5614
LLLEEEEE::	chr2:37111091-37111354(-)$1	263	92	102	18.2456
VVVVVVVVVV	chr6:143486107-143486379(+)$1	272	97	107	14.5614
xxxxffffff	chr11:95560841-95561097(+)$1	256	78	88	14.7368
g[ccc[bb!!	chr1:29391370-29391627(+)$1	257	68	78	15.6140
:::IIIIIII	chr7:140482813-140483078(-)$1	265	99	109	17.8947
33ffffff::	chr11:9309172-9309416(-)$1	244	48	58	15.8771
::::::::::	chr5:167922174-167922448(+)$1	274	89	99	14.4736
::::::::::	chr1:158581033-158581288(-)$1	255	86	96	18.2456
::::::::::	chr14:103148119-103148377(+)$1	258	94	104	22.1929
"""ggggggg	chr5:159520934-159521190(-)$1	256	94	104	18.2456
b]eeeee:FF	chr6:163986861-163987115(+)$1	254	104	114	17.9824
ee]ggggggg	chr7:150066644-150066908(+)$1	264	92	102	15.3508
mdddd333ff	chr2:32429558-32429812(+)$1	254	86	96	18.5087

#DB
..........	chr6:168325457-168325729(+)$1	1	112	122	18.2456
..........	chr1:27092591-27092848(+)$1	1	7	17	15.6140
.......(((	chr6:15468661-15468915(+)$1	1	12	22	15.0000
)))))))..)	chrX:40569229-40569488(-)$1	1	95	105	22.1929
..((......	chr16:23505560-23505840(-)$1	1	92	102	15.5263
(.........	chr22:22142961-22143196(-)$1	1	76	86	15.4385
..........	chr4:74043118-74043437(-)$1	1	2	12	18.4210
..........	chr2:113410374-113410601(+)$1	1	77	87	17.6315
((((......	chr2:113410343-113410574(+)$1	1	108	118	17.6315
.(((((.(((	chr1:31741942-31742197(-)$1	1	85	95	14.8245
)).)))))..	chr7:23561312-23561567(-)$1	1	93	103	15.5263
.........)	chr3:142740178-142740465(+)$1	1	117	127	22.1929
..))))))))	chr10:27412465-27412725(-)$1	1	21	31	14.8245
.....(((((	chr22:45726365-45726634(+)$1	1	51	61	15.2631
..))))))))	chr20:43138466-43138770(-)$1	1	79	89	14.6491
((((((((((	chr15:50867202-50867447(-)$1	1	9	19	14.0350
...((((...	chr10:121336109-121336373(-)$1	1	26	36	13.9473
.........(	chr17:57917011-57917260(+)$1	1	4	14	14.7368
...(((((((	chr5:133725803-133726073(+)$1	1	10	20	15.0877
)))..))).)	chr6:28879360-28879606(-)$1	1	140	150	14.7368
..........	chr11:73429776-73430052(-)$1	1	56	66	22.1929
....))))))	chrX:13337023-13337269(+)$1	1	179	189	15.7017
(.(((((((.	chr17:40632569-40632842(+)$1	1	91	101	14.9122
(((((.....	chr12:44124356-44124619(-)$1	1	99	109	19.3859
((.((((.((	chr1:167984915-167985175(+)$1	1	2	12	15.7894
..........	chr18:55226356-55226628(-)$1	1	86	96	19.2105
((........	chr13:33095445-33095712(-)$1	1	69	79	17.5438
((((((((((	chr3:37369798-37370048(+)$1	1	61	71	14.6491
)..)))))..	chr8:30958252-30958522(+)$1	1	59	69	18.5087
((..((((((	chr7:148508660-148508910(-)$1	1	16	26	15.0877
))))))))..	chr6:32943917-32944167(+)$1	1	91	101	18.5087
))........	chr7:135098229-135098468(-)$1	1	76	86	15.7017
..........	chr6:168313948-168314234(+)$1	1	87	97	14.4736
.....)))..	chr1:173953621-173953874(-)$1	1	97	107	19.3859
))))).....	chr1:226258948-226259184(+)$1	1	22	32	14.7368
))).((((((	chr12:21661180-21661463(+)$1	1	117	127	19.2105
))))...(((	chrX:48435301-48435545(+)$1	1	93	103	15.7017
))))..))))	chr2:209108192-209108460(-)$1	1	87	97	14.4736
..........	chr4:79771964-79772210(+)$1	1	139	149	14.5614
.......(((	chr10:135214920-135215179(+)$1	1	93	103	14.5614
..((.(((((	chr9:95033802-95034065(-)$1	1	96	106	14.4736
..........	chr1:27105396-27105653(+)$1	1	101	111	14.4736
..........	chr1:36411178-36411430(+)$1	1	87	97	15.7894
(((.......	chr14:21463204-21463472(+)$1	1	8	18	14.5614
...(((((..	chr2:37111091-37111354(-)$1	1	92	102	18.2456
..........	chr6:143486107-143486379(+)$1	1	97	107	14.5614
....))))))	chr11:95560841-95561097(+)$1	1	78	88	14.7368
(.(((.((..	chr1:29391370-29391627(+)$1	1	68	78	15.6140
...(((((((	chr7:140482813-140483078(-)$1	1	99	109	17.8947
..))))))..	chr11:9309172-9309416(-)$1	1	48	58	15.8771
..........	chr5:167922174-167922448(+)$1	1	89	99	14.4736
..........	chr1:158581033-158581288(-)$1	1	86	96	18.2456
..........	chr14:103148119-103148377(+)$1	1	94	104	22.1929
...(((((((	chr5:159520934-159521190(-)$1	1	94	104	18.2456
).))))).((	chr6:163986861-163987115(+)$1	1	104	114	17.9824
)).)))))))	chr7:150066644-150066908(+)$1	1	92	102	15.3508
.))))...))	chr2:32429558-32429812(+)$1	1	86	96	18.5087

#PSSM
U : 0.84	C : 0.08	u : 0.03	G : 0.01	A : 0.01	
U : 0.64	C : 0.12	G : 0.10	A : 0.08	u : 0.03	
U : 0.78	G : 0.07	A : 0.05	C : 0.05	a : 0.01	u : 0.01	
U : 0.77	G : 0.08	C : 0.05	A : 0.05	u : 0.03	
U : 0.84	C : 0.08	u : 0.03	A : 0.03	
U : 0.91	G : 0.03	u : 0.03	A : 0.01	
C : 0.77	G : 0.08	U : 0.07	A : 0.03	a : 0.01	c : 0.01	
U : 0.82	C : 0.12	u : 0.03	A : 0.01	
U : 0.85	C : 0.10	u : 0.03	
U : 0.85	C : 0.10	u : 0.03	

#score	941.0526315789488
#seq	57
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_UTR_m2_run2.nuc.txt

#NT
GGGCGAGGG	chr18:43678037-43678293(-)$1	256	240	249	17.7142
gggcggggg	chr19:15442557-15442794(-)$1	237	32	41	22.3968
GGGCGCGGG	chr1:228290853-228291124(-)$1	271	60	69	17.7936
gggcggggg	chr13:42846192-42846440(+)$1	248	34	43	22.3968
GGGAGGGGG	chr3:138553461-138553737(-)$1	276	49	58	18.9841
GGGUGGGGG	chr8:87354874-87355138(+)$1	264	63	72	19.1428
ggguggggg	chr2:20550296-20550592(-)$1	296	92	101	19.1428
GGGCGGUGG	chr21:38445482-38445750(+)$1	268	4	13	17.7936
gggcgggcg	chr7:50860986-50861256(-)$1	270	55	64	18.4285
GGGCGGGGA	chr19:6739607-6739900(+)$1	293	13	22	18.4285
cggcggggg	chr2:139259405-139259702(+)$1	297	1	10	18.1904
GGGCCGGGG	chr3:33481582-33481853(-)$1	271	62	71	18.4285
gggccgggg	chr8:30669827-30670092(-)$1	265	73	82	18.4285
GGGCGGGGC	chr17:79894942-79895209(-)$1	267	24	33	18.7460
gggcggggc	chr14:102430813-102431116(+)$1	303	34	43	18.7460
GGGCGGGGG	chr5:43121610-43121928(+)$1	318	79	88	22.3968
CGGCGGGGG	chr2:62932848-62933154(+)$1	306	12	21	18.1904
GGGAGGGGG	chr12:53574431-53574710(+)$1	279	29	38	18.9841
gggcggggg	chr16:30134333-30134598(-)$1	265	91	100	22.3968
GGGCGGGAG	chr16:30662130-30662417(+)$1	287	38	47	18.0317
GCGCGGGGG	chr3:183602431-183602779(-)$1	348	31	40	17.7142
CGGCGGGGG	chr4:78078369-78078626(+)$1	257	33	42	18.1904
GGGCGGGGC	chr19:1269236-1269507(+)$1	271	42	51	18.7460
CGGCGGGGG	chr16:30537893-30538196(-)$1	303	26	35	18.1904
GGGCCGGGG	chr3:195808803-195809051(-)$1	248	36	45	18.4285
GGGCGGGCG	chr11:65343548-65343817(+)$1	269	122	131	18.4285
GGCCGGGGG	chr1:40626956-40627284(+)$1	328	48	57	17.6349
GGGUGGGGG	chrX:102941445-102941726(-)$1	281	174	183	19.1428
GGGCGGCGG	chr22:20105341-20105574(+)$1	233	152	161	17.7936
GCGCGGGGG	chr1:1310383-1310624(-)$1	241	195	204	17.7142
GGACGGGGG	chr6:74230222-74230457(-)$1	235	186	195	17.6349
GGGCGGGGC	chr16:29985102-29985416(+)$1	314	10	19	18.7460
gggcgggcg	chr2:47142760-47143053(-)$1	293	49	58	18.4285
GGGCGGGGC	chr10:71930054-71930364(-)$1	310	48	57	18.7460
AGGCGGGGG	chr10:103578019-103578291(-)$1	272	32	41	18.0317
gggcggagg	chr19:39138196-39138519(+)$1	323	76	85	17.8730
GGGCUGGGG	chr20:34252555-34252826(-)$1	271	59	68	18.7460
gggcugggg	chr5:159848809-159849081(+)$1	272	178	187	18.7460
GGGAGGGGG	chr16:88718544-88718804(-)$1	260	111	120	18.9841
GGGAGGGGG	chr2:61765237-61765499(-)$1	262	248	257	18.9841
GGGCGGGCG	chr3:122785815-122786174(+)$1	359	135	144	18.4285
Aggcggggg	chr18:77867064-77867406(+)$1	342	154	163	18.0317
GGGCUGGGG	chr17:4848975-4849220(-)$1	245	151	160	18.7460
GGGCGGGGC	chr12:30907473-30907727(-)$1	254	164	173	18.7460
GGGCGGGGG	chr10:103113735-103113996(+)$1	261	96	105	22.3968
GGGCUGGGG	chr12:125398683-125398946(-)$1	263	110	119	18.7460
GGGUGGGGG	chr1:155658332-155658596(-)$1	264	34	43	19.1428
GGGCUGGGG	chr2:111435459-111435729(-)$1	270	218	227	18.7460
gggcgggga	chr1:894494-894738(-)$1	244	25	34	18.4285
GGGCGCGGG	chr15:101835271-101835546(-)$1	275	84	93	17.7936
gggcgggcg	chr7:111202238-111202521(-)$1	283	9	18	18.4285
ggguggggg	chr5:133707165-133707394(+)$1	229	60	69	19.1428
gggaggggg	chr2:46926276-46926541(+)$1	265	59	68	18.9841
GGGUGGGGG	chr5:137688338-137688618(+)$1	280	25	34	19.1428
GGGCGGAGG	chr1:52344249-52344519(-)$1	270	65	74	17.8730
GGGUGGGGG	chr8:74884202-74884487(-)$1	285	100	109	19.1428
GGGCGGGGC	chr7:99686488-99686804(+)$1	316	93	102	18.7460
GGGCUGGGG	chr3:38206982-38207215(+)$1	233	57	66	18.7460
GGGCGGGGA	chr1:180601056-180601316(+)$1	260	81	90	18.4285
GGGAGGGGG	chr1:235491351-235491595(-)$1	244	29	38	18.9841
GGGCUGGGG	chr3:38206926-38207182(+)$1	256	113	122	18.7460
GGGCGGGCG	chr10:129924495-129924745(-)$1	250	37	46	18.4285

#otherMatches

#Struct PSSM
dddd22bb]	chr3:42845817-42846087(-)$1	270	255	264	19.1428
GGGEEEEEE	chr18:43678037-43678293(-)$1	256	240	249	17.7142
FFFF{CCCC	chr19:15442557-15442794(-)$1	237	32	41	22.3968
eeee[dddd	chr1:228290853-228291124(-)$1	271	60	69	17.7936
{A{CCC{A{	chr13:42846192-42846440(+)$1	248	34	43	22.3968
d4444a333	chr3:138553461-138553737(-)$1	276	49	58	18.9841
!a[ccc[a[	chr8:87354874-87355138(+)$1	264	63	72	19.1428
EE{CCCKKD	chr2:20550296-20550592(-)$1	296	92	101	19.1428
Eggggggg!	chr21:38445482-38445750(+)$1	268	4	13	17.7936
DDDDKKBB{	chr7:50860986-50861256(-)$1	270	55	64	18.4285
EEEEE{CCC	chr19:6739607-6739900(+)$1	293	13	22	18.4285
::::EEEEE	chr2:139259405-139259702(+)$1	297	1	10	18.1904
]ddddiiii	chr3:33481582-33481853(-)$1	271	62	71	18.4285
22ccc333d	chr8:30669827-30670092(-)$1	265	73	82	18.4285
GGG{HHHHH	chr17:79894942-79895209(-)$1	267	24	33	18.7460
IIIIhhhhh	chr14:102430813-102431116(+)$1	303	34	43	18.7460
dddd]bb]a	chr5:43121610-43121928(+)$1	318	79	88	22.3968
b[dddd[a"	chr2:62932848-62933154(+)$1	306	12	21	18.1904
CCCNNNNNH	chr12:53574431-53574710(+)$1	279	29	38	18.9841
dddd:eeee	chr16:30134333-30134598(-)$1	265	91	100	22.3968
LLBB{CCCK	chr16:30662130-30662417(+)$1	287	38	47	18.0317
iiiiiiiii	chr3:183602431-183602779(-)$1	348	31	40	17.7142
DDDLLLJJJ	chr4:78078369-78078626(+)$1	257	33	42	18.1904
FFF::iiii	chr19:1269236-1269507(+)$1	271	42	51	18.7460
CKKEEEEEF	chr16:30537893-30538196(-)$1	303	26	35	18.1904
eeee:EEEE	chr3:195808803-195809051(-)$1	248	36	45	18.4285
22a]dddd2	chr11:65343548-65343817(+)$1	269	122	131	18.4285
hDDDD{EEE	chr1:40626956-40627284(+)$1	328	48	57	17.6349
DDD}GGGGG	chrX:102941445-102941726(-)$1	281	174	183	19.1428
eeeebb[bb	chr22:20105341-20105574(+)$1	233	152	161	17.7936
nddddcccn	chr1:1310383-1310624(-)$1	241	195	204	17.7142
==bb]bbad	chr6:74230222-74230457(-)$1	235	186	195	17.6349
ggggqqqqq	chr16:29985102-29985416(+)$1	314	10	19	18.7460
b[ccc[ccc	chr2:47142760-47143053(-)$1	293	49	58	18.4285
eeeee[aqq	chr10:71930054-71930364(-)$1	310	48	57	18.7460
rrrrdddd]	chr10:103578019-103578291(-)$1	272	32	41	18.0317
[a[a$$$$$	chr19:39138196-39138519(+)$1	323	76	85	17.8730
EEEEEEEEE	chr20:34252555-34252826(-)$1	271	59	68	18.7460
ee[bb[ddd	chr5:159848809-159849081(+)$1	272	178	187	18.7460
rrrrrrrrr	chr16:88718544-88718804(-)$1	260	111	120	18.9841
}DDDD}A}F	chr2:61765237-61765499(-)$1	262	248	257	18.9841
EEEEE{FFF	chr3:122785815-122786174(+)$1	359	135	144	18.4285
{CCC{CCCB	chr18:77867064-77867406(+)$1	342	154	163	18.0317
eee!!eeee	chr17:4848975-4849220(-)$1	245	151	160	18.7460
qqqqqqqqe	chr12:30907473-30907727(-)$1	254	164	173	18.7460
ddddfffff	chr10:103113735-103113996(+)$1	261	96	105	22.3968
ffbbmmmmb	chr12:125398683-125398946(-)$1	263	110	119	18.7460
uuubb]a]d	chr1:155658332-155658596(-)$1	264	34	43	19.1428
ZZHHHHHHH	chr2:111435459-111435729(-)$1	270	218	227	18.7460
JJJJJJJJJ	chr1:894494-894738(-)$1	244	25	34	18.4285
oooccc]ee	chr15:101835271-101835546(-)$1	275	84	93	17.7936
rrrrrrfff	chr7:111202238-111202521(-)$1	283	9	18	18.4285
DDDD{DDDD	chr5:133707165-133707394(+)$1	229	60	69	19.1428
ggg]fffff	chr2:46926276-46926541(+)$1	265	59	68	18.9841
yyyyyyyyy	chr5:137688338-137688618(+)$1	280	25	34	19.1428
bb]bb22bb	chr1:52344249-52344519(-)$1	270	65	74	17.8730
2ffffffgg	chr8:74884202-74884487(-)$1	285	100	109	19.1428
uccc4444c	chr7:99686488-99686804(+)$1	316	93	102	18.7460
nnbb22ddd	chr3:38206982-38207215(+)$1	233	57	66	18.7460
eee]bbaff	chr1:180601056-180601316(+)$1	260	81	90	18.4285
EEEE{BBBB	chr1:235491351-235491595(-)$1	244	29	38	18.9841
nnbb22ddd	chr3:38206926-38207182(+)$1	256	113	122	18.7460
]dddd:bb[	chr10:129924495-129924745(-)$1	250	37	46	18.4285

#DB
))))..)).	chr3:42845817-42846087(-)$1	1	255	264	19.1428
)))))))))	chr18:43678037-43678293(-)$1	1	240	249	17.7142
((((.((((	chr19:15442557-15442794(-)$1	1	32	41	22.3968
((((.((((	chr1:228290853-228291124(-)$1	1	60	69	17.7936
.(.(((.(.	chr13:42846192-42846440(+)$1	1	34	43	22.3968
)....)...	chr3:138553461-138553737(-)$1	1	49	58	18.9841
.(.(((.(.	chr8:87354874-87355138(+)$1	1	63	72	19.1428
((.(((..(	chr2:20550296-20550592(-)$1	1	92	101	19.1428
((((((((.	chr21:38445482-38445750(+)$1	1	4	13	17.7936
((((..((.	chr7:50860986-50861256(-)$1	1	55	64	18.4285
(((((.(((	chr19:6739607-6739900(+)$1	1	13	22	18.4285
....(((((	chr2:139259405-139259702(+)$1	1	1	10	18.1904
.))))((((	chr3:33481582-33481853(-)$1	1	62	71	18.4285
..)))...)	chr8:30669827-30670092(-)$1	1	73	82	18.4285
(((.(((((	chr17:79894942-79895209(-)$1	1	24	33	18.7460
(((((((((	chr14:102430813-102431116(+)$1	1	34	43	18.7460
)))).)).)	chr5:43121610-43121928(+)$1	1	79	88	22.3968
(.((((.(.	chr2:62932848-62933154(+)$1	1	12	21	18.1904
(((.....(	chr12:53574431-53574710(+)$1	1	29	38	18.9841
)))).((((	chr16:30134333-30134598(-)$1	1	91	100	22.3968
..((.(((.	chr16:30662130-30662417(+)$1	1	38	47	18.0317
(((((((((	chr3:183602431-183602779(-)$1	1	31	40	17.7142
(((...(((	chr4:78078369-78078626(+)$1	1	33	42	18.1904
(((..((((	chr19:1269236-1269507(+)$1	1	42	51	18.7460
(..((((((	chr16:30537893-30538196(-)$1	1	26	35	18.1904
)))).((((	chr3:195808803-195809051(-)$1	1	36	45	18.4285
..).)))).	chr11:65343548-65343817(+)$1	1	122	131	18.4285
)((((.(((	chr1:40626956-40627284(+)$1	1	48	57	17.6349
))).)))))	chrX:102941445-102941726(-)$1	1	174	183	19.1428
((((((.((	chr22:20105341-20105574(+)$1	1	152	161	17.7936
.))))(((.	chr1:1310383-1310624(-)$1	1	195	204	17.7142
)))).))))	chr6:74230222-74230457(-)$1	1	186	195	17.6349
((((.....	chr16:29985102-29985416(+)$1	1	10	19	18.7460
(.(((.(((	chr2:47142760-47143053(-)$1	1	49	58	18.4285
(((((.(..	chr10:71930054-71930364(-)$1	1	48	57	18.7460
....)))).	chr10:103578019-103578291(-)$1	1	32	41	18.0317
.(.(.....	chr19:39138196-39138519(+)$1	1	76	85	17.8730
(((((((((	chr20:34252555-34252826(-)$1	1	59	68	18.7460
((.((.(((	chr5:159848809-159849081(+)$1	1	178	187	18.7460
.........	chr16:88718544-88718804(-)$1	1	111	120	18.9841
.)))).).)	chr2:61765237-61765499(-)$1	1	248	257	18.9841
(((((.(((	chr3:122785815-122786174(+)$1	1	135	144	18.4285
.(((.((((	chr18:77867064-77867406(+)$1	1	154	163	18.0317
(((..((((	chr17:4848975-4849220(-)$1	1	151	160	18.7460
........)	chr12:30907473-30907727(-)$1	1	164	173	18.7460
)))))))))	chr10:103113735-103113996(+)$1	1	96	105	22.3968
((((....)	chr12:125398683-125398946(-)$1	1	110	119	18.7460
...)).).)	chr1:155658332-155658596(-)$1	1	34	43	19.1428
..)))))))	chr2:111435459-111435729(-)$1	1	218	227	18.7460
(((((((((	chr1:894494-894738(-)$1	1	25	34	18.4285
...))).))	chr15:101835271-101835546(-)$1	1	84	93	17.7936
......)))	chr7:111202238-111202521(-)$1	1	9	18	18.4285
((((.((((	chr5:133707165-133707394(+)$1	1	60	69	19.1428
))).)))))	chr2:46926276-46926541(+)$1	1	59	68	18.9841
.........	chr5:137688338-137688618(+)$1	1	25	34	19.1428
)).))..))	chr1:52344249-52344519(-)$1	1	65	74	17.8730
.))))))))	chr8:74884202-74884487(-)$1	1	100	109	19.1428
.)))....)	chr7:99686488-99686804(+)$1	1	93	102	18.7460
..))..)))	chr3:38206982-38207215(+)$1	1	57	66	18.7460
))).)))))	chr1:180601056-180601316(+)$1	1	81	90	18.4285
((((.((((	chr1:235491351-235491595(-)$1	1	29	38	18.9841
..))..)))	chr3:38206926-38207182(+)$1	1	113	122	18.7460
.)))).((.	chr10:129924495-129924745(-)$1	1	37	46	18.4285

#PSSM
G : 0.68	g : 0.22	C : 0.04	A : 0.03	c : 0.01	
G : 0.71	g : 0.25	C : 0.03	
G : 0.71	g : 0.25	C : 0.01	A : 0.01	
C : 0.57	c : 0.20	U : 0.09	A : 0.07	u : 0.03	a : 0.01	
G : 0.61	g : 0.22	U : 0.09	C : 0.03	c : 0.01	u : 0.01	
G : 0.69	g : 0.25	C : 0.03	A : 0.01	
G : 0.69	g : 0.23	U : 0.01	C : 0.01	a : 0.01	A : 0.01	
G : 0.68	g : 0.20	c : 0.04	C : 0.04	A : 0.01	
G : 0.61	g : 0.22	C : 0.09	A : 0.03	c : 0.01	a : 0.01	

#score	1184.8095238095232
#seq	63
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_UTR_m2_run1.nuc.txt

#NT
UCAG	chr19:51857359-51857647(-)$1	288	218	222	11.9999
UCAG	chr1:109968900-109969157(-)$1	257	164	168	11.9999
UCAG	chr5:177631529-177631784(+)$1	255	2	6	11.9999
ucag	chr1:32696696-32696931(+)$1	235	183	187	11.9999
UCAG	chr19:39329121-39329339(-)$1	218	50	54	11.9999
UCAG	chr11:18428616-18428883(+)$1	267	43	47	11.9999
UCAG	chr2:73461342-73461589(+)$1	247	199	203	11.9999
UCAG	chr20:57607202-57607495(-)$1	293	30	34	11.9999
UCAG	chr19:580572-580876(+)$1	304	69	73	11.9999
UCAG	chr16:21991782-21992107(+)$1	325	25	29	11.9999
UCAG	chr22:18075277-18075563(-)$1	286	21	25	11.9999
UCAG	chr12:54063001-54063225(-)$1	224	104	108	11.9999
UCAG	chr1:226250322-226250538(+)$1	216	86	90	11.9999
UCAG	chr5:10290663-10290981(-)$1	318	56	60	11.9999
UCAG	chr16:31202026-31202261(+)$1	235	191	195	11.9999
UCAG	chr14:100841545-100841803(-)$1	258	56	60	11.9999
UCAG	chr6:30692041-30692281(+)$1	240	63	67	11.9999
UCAG	chr11:5289573-5289779(-)$1	206	191	195	11.9999
UCAG	chr22:22893326-22893588(-)$1	262	0	4	11.9999
UCAG	chr6:144416228-144416473(-)$1	245	57	61	11.9999
UCAG	chr7:97482516-97482748(-)$1	232	170	174	11.9999
UCAG	chr20:5100334-5100613(-)$1	279	56	60	11.9999
UCAG	chr11:111959577-111959836(+)$1	259	58	62	11.9999
UCAG	chr2:198364922-198365223(+)$1	301	26	30	11.9999
UCAG	chr8:99053921-99054161(-)$1	240	226	230	11.9999
UCAG	chr9:127177575-127177813(-)$1	238	24	28	11.9999
UCAG	chr6:31704109-31704375(-)$1	266	36	40	11.9999
UCAG	chr19:40325073-40325302(-)$1	229	128	132	11.9999
UCAG	chr19:50432394-50432649(+)$1	255	221	225	11.9999
UCAG	chr5:133496652-133496922(-)$1	270	106	110	11.9999
UCAG	chr10:75157838-75158139(-)$1	301	4	8	11.9999
UCAG	chr12:96252642-96252924(+)$1	282	16	20	11.9999
UCAG	chr17:74733261-74733506(-)$1	245	11	15	11.9999
UCAG	chr5:177022310-177022572(+)$1	262	177	181	11.9999
UCAG	chr15:72499075-72499321(-)$1	246	31	35	11.9999
ucag	chr22:22221779-22222030(-)$1	251	93	97	11.9999
UCAG	chr5:10250342-10250579(+)$1	237	172	176	11.9999
UCAG	chr11:75115066-75115308(+)$1	242	176	180	11.9999
UCAG	chr1:39500030-39500276(+)$1	246	4	8	11.9999
UCAG	chr6:26124754-26124998(+)$1	244	17	21	11.9999
UCAG	chr10:126086353-126086619(-)$1	266	23	27	11.9999
UCAG	chr6:41756940-41757175(+)$1	235	110	114	11.9999
UCAG	chr7:5567266-5567483(-)$1	217	46	50	11.9999
UCAG	chr1:109957828-109958086(-)$1	258	131	135	11.9999
UCAG	chr19:5894613-5894898(-)$1	285	215	219	11.9999
UCAG	chr19:38800123-38800384(-)$1	261	172	176	11.9999
UCAG	chr6:27114447-27114692(-)$1	245	91	95	11.9999
UCAG	chr11:67379488-67379760(+)$1	272	72	76	11.9999
UCAG	chr18:47018732-47018946(-)$1	214	20	24	11.9999
UCAG	chr6:41756883-41757140(+)$1	257	46	50	11.9999
UCAG	chr6:35436084-35436317(+)$1	233	56	60	11.9999
UCAG	chr1:45205536-45205770(+)$1	234	88	92	11.9999
UCAG	chr22:22890357-22890592(-)$1	235	195	199	11.9999
UCAG	chr12:50152385-50152625(+)$1	240	91	95	11.9999
UCAG	chr1:45241149-45241372(+)$1	223	28	32	11.9999
UCAG	chr17:37008789-37009027(-)$1	238	159	163	11.9999
UCAG	chr18:43666040-43666290(-)$1	250	96	100	11.9999
UCAG	chr22:24236488-24236725(+)$1	237	97	101	11.9999
UCAG	chr1:156280764-156281029(-)$1	265	102	106	11.9999
UCAG	chr17:40925655-40925929(+)$1	274	6	10	11.9999
UCAG	chr6:114291962-114292211(-)$1	249	44	48	11.9999
UCAG	chr14:21269973-21270292(-)$1	319	191	195	11.9999
UCAG	chr17:7210824-7211114(+)$1	290	100	104	11.9999
UCAG	chr11:61081752-61082029(-)$1	277	77	81	11.9999
UCAG	chr12:49522446-49522706(-)$1	260	5	9	11.9999
UCAG	chr1:156280639-156280952(-)$1	313	25	29	11.9999
UCAG	chr1:156278833-156279122(-)$1	289	64	68	11.9999
UCAG	chr10:5842556-5842768(-)$1	212	112	116	11.9999
UCAG	chr11:5289536-5289743(-)$1	207	155	159	11.9999
UCAG	chr1:45976853-45977093(-)$1	240	186	190	11.9999
UCAG	chr17:57771104-57771338(+)$1	234	170	174	11.9999
UCAG	chr1:8921315-8921552(-)$1	237	111	115	11.9999
UCAG	chr16:87436551-87436796(+)$1	245	1	5	11.9999
UCAG	chr5:10260881-10261126(+)$1	245	54	58	11.9999

#otherMatches

#Struct PSSM
CC::	chr11:6639914-6640244(-)$1	330	12	16	11.9999
###f	chr19:51857359-51857647(-)$1	288	218	222	11.9999
eeee	chr1:109968900-109969157(-)$1	257	164	168	11.9999
dd!!	chr5:177631529-177631784(+)$1	255	2	6	11.9999
gggg	chr1:32696696-32696931(+)$1	235	183	187	11.9999
$$$d	chr19:39329121-39329339(-)$1	218	50	54	11.9999
IIIF	chr11:18428616-18428883(+)$1	267	43	47	11.9999
iiib	chr2:73461342-73461589(+)$1	247	199	203	11.9999
DDMM	chr20:57607202-57607495(-)$1	293	30	34	11.9999
ccc[	chr19:580572-580876(+)$1	304	69	73	11.9999
IIII	chr16:21991782-21992107(+)$1	325	25	29	11.9999
::gg	chr22:18075277-18075563(-)$1	286	21	25	11.9999
ssss	chr12:54063001-54063225(-)$1	224	104	108	11.9999
::cc	chr1:226250322-226250538(+)$1	216	86	90	11.9999
E::f	chr5:10290663-10290981(-)$1	318	56	60	11.9999
dd!!	chr16:31202026-31202261(+)$1	235	191	195	11.9999
iiii	chr14:100841545-100841803(-)$1	258	56	60	11.9999
bb:F	chr6:30692041-30692281(+)$1	240	63	67	11.9999
FFFF	chr11:5289573-5289779(-)$1	206	191	195	11.9999
::::	chr22:22893326-22893588(-)$1	262	0	4	11.9999
dddd	chr6:144416228-144416473(-)$1	245	57	61	11.9999
::gg	chr7:97482516-97482748(-)$1	232	170	174	11.9999
dfff	chr20:5100334-5100613(-)$1	279	56	60	11.9999
{DDD	chr11:111959577-111959836(+)$1	259	58	62	11.9999
ccca	chr2:198364922-198365223(+)$1	301	26	30	11.9999
CCCY	chr8:99053921-99054161(-)$1	240	226	230	11.9999
$ddd	chr9:127177575-127177813(-)$1	238	24	28	11.9999
444i	chr6:31704109-31704375(-)$1	266	36	40	11.9999
dd:B	chr19:40325073-40325302(-)$1	229	128	132	11.9999
:ddd	chr19:50432394-50432649(+)$1	255	221	225	11.9999
hh[f	chr5:133496652-133496922(-)$1	270	106	110	11.9999
iiii	chr10:75157838-75158139(-)$1	301	4	8	11.9999
"bb[	chr12:96252642-96252924(+)$1	282	16	20	11.9999
:::d	chr17:74733261-74733506(-)$1	245	11	15	11.9999
cc]f	chr5:177022310-177022572(+)$1	262	177	181	11.9999
J{BB	chr15:72499075-72499321(-)$1	246	31	35	11.9999
c!!a	chr22:22221779-22222030(-)$1	251	93	97	11.9999
c]dd	chr5:10250342-10250579(+)$1	237	172	176	11.9999
hhhp	chr11:75115066-75115308(+)$1	242	176	180	11.9999
hhhh	chr1:39500030-39500276(+)$1	246	4	8	11.9999
""ee	chr6:26124754-26124998(+)$1	244	17	21	11.9999
EEEB	chr10:126086353-126086619(-)$1	266	23	27	11.9999
oood	chr6:41756940-41757175(+)$1	235	110	114	11.9999
]ddd	chr7:5567266-5567483(-)$1	217	46	50	11.9999
eemm	chr1:109957828-109958086(-)$1	258	131	135	11.9999
eee!	chr19:5894613-5894898(-)$1	285	215	219	11.9999
33bb	chr19:38800123-38800384(-)$1	261	172	176	11.9999
"""d	chr6:27114447-27114692(-)$1	245	91	95	11.9999
ee[b	chr11:67379488-67379760(+)$1	272	72	76	11.9999
::dd	chr18:47018732-47018946(-)$1	214	20	24	11.9999
ff[b	chr6:41756883-41757140(+)$1	257	46	50	11.9999
IIII	chr6:35436084-35436317(+)$1	233	56	60	11.9999
::GG	chr1:45205536-45205770(+)$1	234	88	92	11.9999
#bbo	chr22:22890357-22890592(-)$1	235	195	199	11.9999
]ddd	chr12:50152385-50152625(+)$1	240	91	95	11.9999
qqq=	chr1:45241149-45241372(+)$1	223	28	32	11.9999
ffff	chr17:37008789-37009027(-)$1	238	159	163	11.9999
eeee	chr18:43666040-43666290(-)$1	250	96	100	11.9999
!!gg	chr22:24236488-24236725(+)$1	237	97	101	11.9999
d!!b	chr1:156280764-156281029(-)$1	265	102	106	11.9999
CCC:	chr17:40925655-40925929(+)$1	274	6	10	11.9999
LLLC	chr6:114291962-114292211(-)$1	249	44	48	11.9999
]ccc	chr14:21269973-21270292(-)$1	319	191	195	11.9999
b!!b	chr17:7210824-7211114(+)$1	290	100	104	11.9999
yeee	chr11:61081752-61082029(-)$1	277	77	81	11.9999
F::e	chr12:49522446-49522706(-)$1	260	5	9	11.9999
oooo	chr1:156280639-156280952(-)$1	313	25	29	11.9999
f]cc	chr1:156278833-156279122(-)$1	289	64	68	11.9999
f]gg	chr10:5842556-5842768(-)$1	212	112	116	11.9999
ccce	chr11:5289536-5289743(-)$1	207	155	159	11.9999
DDDD	chr1:45976853-45977093(-)$1	240	186	190	11.9999
eeee	chr17:57771104-57771338(+)$1	234	170	174	11.9999
~~EE	chr1:8921315-8921552(-)$1	237	111	115	11.9999
:ddd	chr16:87436551-87436796(+)$1	245	1	5	11.9999
:::G	chr5:10260881-10261126(+)$1	245	54	58	11.9999

#DB
((..	chr11:6639914-6640244(-)$1	1	12	16	11.9999
...(	chr19:51857359-51857647(-)$1	1	218	222	11.9999
))))	chr1:109968900-109969157(-)$1	1	164	168	11.9999
((..	chr5:177631529-177631784(+)$1	1	2	6	11.9999
((((	chr1:32696696-32696931(+)$1	1	183	187	11.9999
...(	chr19:39329121-39329339(-)$1	1	50	54	11.9999
((((	chr11:18428616-18428883(+)$1	1	43	47	11.9999
)))(	chr2:73461342-73461589(+)$1	1	199	203	11.9999
((..	chr20:57607202-57607495(-)$1	1	30	34	11.9999
(((.	chr19:580572-580876(+)$1	1	69	73	11.9999
((((	chr16:21991782-21992107(+)$1	1	25	29	11.9999
..((	chr22:18075277-18075563(-)$1	1	21	25	11.9999
....	chr12:54063001-54063225(-)$1	1	104	108	11.9999
..((	chr1:226250322-226250538(+)$1	1	86	90	11.9999
(..(	chr5:10290663-10290981(-)$1	1	56	60	11.9999
((..	chr16:31202026-31202261(+)$1	1	191	195	11.9999
((((	chr14:100841545-100841803(-)$1	1	56	60	11.9999
)).(	chr6:30692041-30692281(+)$1	1	63	67	11.9999
))))	chr11:5289573-5289779(-)$1	1	191	195	11.9999
....	chr22:22893326-22893588(-)$1	1	0	4	11.9999
))))	chr6:144416228-144416473(-)$1	1	57	61	11.9999
..((	chr7:97482516-97482748(-)$1	1	170	174	11.9999
))))	chr20:5100334-5100613(-)$1	1	56	60	11.9999
.(((	chr11:111959577-111959836(+)$1	1	58	62	11.9999
((((	chr2:198364922-198365223(+)$1	1	26	30	11.9999
))).	chr8:99053921-99054161(-)$1	1	226	230	11.9999
.(((	chr9:127177575-127177813(-)$1	1	24	28	11.9999
...)	chr6:31704109-31704375(-)$1	1	36	40	11.9999
)).)	chr19:40325073-40325302(-)$1	1	128	132	11.9999
.(((	chr19:50432394-50432649(+)$1	1	221	225	11.9999
((.(	chr5:133496652-133496922(-)$1	1	106	110	11.9999
((((	chr10:75157838-75158139(-)$1	1	4	8	11.9999
.((.	chr12:96252642-96252924(+)$1	1	16	20	11.9999
...(	chr17:74733261-74733506(-)$1	1	11	15	11.9999
)).)	chr5:177022310-177022572(+)$1	1	177	181	11.9999
(.((	chr15:72499075-72499321(-)$1	1	31	35	11.9999
(..(	chr22:22221779-22222030(-)$1	1	93	97	11.9999
).))	chr5:10250342-10250579(+)$1	1	172	176	11.9999
(((.	chr11:75115066-75115308(+)$1	1	176	180	11.9999
((((	chr1:39500030-39500276(+)$1	1	4	8	11.9999
..((	chr6:26124754-26124998(+)$1	1	17	21	11.9999
((((	chr10:126086353-126086619(-)$1	1	23	27	11.9999
...)	chr6:41756940-41757175(+)$1	1	110	114	11.9999
.)))	chr7:5567266-5567483(-)$1	1	46	50	11.9999
((..	chr1:109957828-109958086(-)$1	1	131	135	11.9999
(((.	chr19:5894613-5894898(-)$1	1	215	219	11.9999
..))	chr19:38800123-38800384(-)$1	1	172	176	11.9999
...(	chr6:27114447-27114692(-)$1	1	91	95	11.9999
((.(	chr11:67379488-67379760(+)$1	1	72	76	11.9999
..((	chr18:47018732-47018946(-)$1	1	20	24	11.9999
((.(	chr6:41756883-41757140(+)$1	1	46	50	11.9999
((((	chr6:35436084-35436317(+)$1	1	56	60	11.9999
..((	chr1:45205536-45205770(+)$1	1	88	92	11.9999
.((.	chr22:22890357-22890592(-)$1	1	195	199	11.9999
.)))	chr12:50152385-50152625(+)$1	1	91	95	11.9999
...)	chr1:45241149-45241372(+)$1	1	28	32	11.9999
((((	chr17:37008789-37009027(-)$1	1	159	163	11.9999
))))	chr18:43666040-43666290(-)$1	1	96	100	11.9999
..((	chr22:24236488-24236725(+)$1	1	97	101	11.9999
(..(	chr1:156280764-156281029(-)$1	1	102	106	11.9999
(((.	chr17:40925655-40925929(+)$1	1	6	10	11.9999
...(	chr6:114291962-114292211(-)$1	1	44	48	11.9999
.)))	chr14:21269973-21270292(-)$1	1	191	195	11.9999
(..(	chr17:7210824-7211114(+)$1	1	100	104	11.9999
.)))	chr11:61081752-61082029(-)$1	1	77	81	11.9999
(..(	chr12:49522446-49522706(-)$1	1	5	9	11.9999
....	chr1:156280639-156280952(-)$1	1	25	29	11.9999
).))	chr1:156278833-156279122(-)$1	1	64	68	11.9999
).))	chr10:5842556-5842768(-)$1	1	112	116	11.9999
)))(	chr11:5289536-5289743(-)$1	1	155	159	11.9999
))))	chr1:45976853-45977093(-)$1	1	186	190	11.9999
))))	chr17:57771104-57771338(+)$1	1	170	174	11.9999
..))	chr1:8921315-8921552(-)$1	1	111	115	11.9999
.(((	chr16:87436551-87436796(+)$1	1	1	5	11.9999
...(	chr5:10260881-10261126(+)$1	1	54	58	11.9999

#PSSM
U : 0.97	u : 0.02	
C : 0.97	c : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	

#score	899.9999999999998
#seq	75
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_CDS_m2_run1.nuc.txt

#NT
CAUUUAC	chr7:141464064-141464311(+)$1	247	162	169	13.0289
CAUUUAC	chr7:141464134-141464386(+)$1	252	92	99	13.0289
CAUUCUC	chrX:71426787-71427062(+)$1	275	94	101	12.5217
CAUUUUC	chr2:179431265-179431526(+)$1	261	197	204	17.0869
CAUUCUC	chrX:71426744-71426980(+)$1	236	137	144	12.5217
CAUAUUC	chr3:187896900-187897152(+)$1	252	31	38	13.1014
CAAUUUC	chr2:179428807-179429090(+)$1	283	240	247	13.0289
CAUCUUC	chr2:179436510-179436756(+)$1	246	1	8	13.0289
CAUUUAC	chr10:71914713-71914991(-)$1	278	168	175	13.0289
UAUUUUC	chr2:179427441-179427669(+)$1	228	166	173	13.3188
CAUUUUC	chr2:186658456-186658721(-)$1	265	110	117	17.0869
CAUGUUC	chr7:141464397-141464658(+)$1	261	104	111	13.0289
CCUUUUC	chr7:141478527-141478762(+)$1	235	223	230	12.8840
CAUUUUU	chr2:179428629-179428867(+)$1	238	69	76	13.0289
CUUUUUC	chr2:179429669-179429932(+)$1	263	22	29	12.8115
CAUUUUC	chr2:186660776-186661060(-)$1	284	53	60	17.0869
CACUUUC	chr2:179427040-179427297(+)$1	257	150	157	12.8115
UAUUUUC	chr2:179429209-179429458(+)$1	249	195	202	13.3188
CAUUUAC	chr7:141464186-141464426(+)$1	240	40	47	13.0289
CAUAUUC	chr3:99569365-99569704(+)$1	339	64	71	13.1014
GAUUUUC	chr2:186657691-186657988(-)$1	297	52	59	13.0289
CAUGUUC	chr7:141464316-141464582(+)$1	266	185	192	13.0289
CUUUUUC	chr19:45911588-45911841(-)$1	253	84	91	12.8115
CAUUUUC	chr1:174417668-174417946(+)$1	278	255	262	17.0869
CAAUUUC	chr2:179428326-179428564(+)$1	238	28	35	13.0289
CAUUUUC	chr2:179424328-179424551(+)$1	223	87	94	17.0869
AAUUUUC	chr1:91967158-91967409(+)$1	251	41	48	13.1014
UAUUUUC	chr2:179433927-179434165(+)$1	238	195	202	13.3188
CAAUUUC	chr2:179432051-179432307(+)$1	256	104	111	13.0289
CAUUUUC	chr2:179427974-179428276(+)$1	302	239	246	17.0869
AAUUUUC	chr3:99568181-99568420(+)$1	239	160	167	13.1014
CCUUUUC	chr19:37825980-37826230(+)$1	250	231	238	12.8840
CAAUUUC	chr2:179428251-179428494(+)$1	243	103	110	13.0289
CAUAUUC	chr2:179431734-179431942(+)$1	208	52	59	13.1014
CCUUUUC	chr7:141478740-141478990(+)$1	250	10	17	12.8840
CAUUUUU	chr2:179428486-179428730(+)$1	244	212	219	13.0289
CAUUUUU	chr3:99567658-99567918(+)$1	260	227	234	13.0289
CAUUUUU	chr12:95651917-95652162(+)$1	245	90	97	13.0289
AAUUUUC	chr2:186658169-186658415(-)$1	246	161	168	13.1014
CAUUUUC	chr6:132030758-132031014(+)$1	256	216	223	17.0869
CAUUUUC	chr2:179424783-179425026(+)$1	243	187	194	17.0869
CUUUUUC	chr6:64451685-64451961(+)$1	276	23	30	12.8115
CAUCUUC	chr5:112228298-112228614(-)$1	316	162	169	13.0289
CAUUUUC	chr2:179417392-179417639(+)$1	247	200	207	17.0869
CAUUUUC	chr7:141464793-141465050(+)$1	257	103	110	17.0869
CAUUUUC	chr6:132031092-132031344(+)$1	252	155	162	17.0869
CAAUUUC	chr2:179432154-179432421(+)$1	267	1	8	13.0289
UAUUUUC	chr2:186661575-186661861(-)$1	286	1	8	13.3188
CAUUAUC	chr2:179454384-179454690(+)$1	306	278	285	12.5217
CACUUUC	chr2:179427145-179427421(+)$1	276	45	52	12.8115
CAUUUUC	chr2:179436909-179437183(+)$1	274	157	164	17.0869
CAUUUAC	chr2:179467093-179467351(+)$1	258	65	72	13.0289
CAGUUUC	chr2:179439742-179439989(+)$1	247	190	197	12.7391
CAUUAUC	chr7:141490134-141490384(+)$1	250	164	171	12.5217
CAUUUUU	chr2:186658931-186659169(-)$1	238	210	217	13.0289
UAUUUUC	chr2:97402831-97403074(-)$1	243	53	60	13.3188
CAUUUAC	chr2:186654581-186654815(-)$1	234	98	105	13.0289
CAUUUUA	chr2:179408978-179409249(+)$1	271	46	53	12.6666
CAUUUUU	chrX:71427139-71427413(+)$1	274	91	98	13.0289
GAUUUUC	chr2:179434271-179434507(+)$1	236	30	37	13.0289
CAUAUUC	chr2:186656533-186656769(-)$1	236	42	49	13.1014
CAUUUCC	chr3:99568744-99569040(+)$1	296	37	44	12.6666
CAUUUUC	chr2:186656295-186656601(-)$1	306	148	155	17.0869
cauuuuc	chr2:240922938-240923228(-)$1	290	4	11	17.0869
CAUGUUC	chr7:141464458-141464712(+)$1	254	43	50	13.0289
CAUUUUC	chr2:186661167-186661443(-)$1	276	82	89	17.0869
CAUCUUC	chrX:71425472-71425737(+)$1	265	41	48	13.0289
CCUUUUC	chr2:186661395-186661610(-)$1	215	69	76	12.8840

#otherMatches

#Struct PSSM
b666666	chr2:179430836-179431098(+)$1	262	40	47	13.3188
ccc:::c	chr7:141464064-141464311(+)$1	247	162	169	13.0289
ccc:::c	chr7:141464134-141464386(+)$1	252	92	99	13.0289
cEEEEE{	chrX:71426787-71427062(+)$1	275	94	101	12.5217
ccccc22	chr2:179431265-179431526(+)$1	261	197	204	17.0869
::::III	chrX:71426744-71426980(+)$1	236	137	144	12.5217
wwwwwww	chr3:187896900-187897152(+)$1	252	31	38	13.1014
##ccc[b	chr2:179428807-179429090(+)$1	283	240	247	13.0289
:::::::	chr2:179436510-179436756(+)$1	246	1	8	13.0289
>>>>>>>	chr10:71914713-71914991(-)$1	278	168	175	13.0289
eeee777	chr2:179427441-179427669(+)$1	228	166	173	13.3188
:::::::	chr2:186658456-186658721(-)$1	265	110	117	17.0869
=======	chr7:141464397-141464658(+)$1	261	104	111	13.0289
:::::::	chr7:141478527-141478762(+)$1	235	223	230	12.8840
&&&&eee	chr2:179428629-179428867(+)$1	238	69	76	13.0289
ooooeee	chr2:179429669-179429932(+)$1	263	22	29	12.8115
hhh::::	chr2:186660776-186661060(-)$1	284	53	60	17.0869
qqqqqqq	chr2:179427040-179427297(+)$1	257	150	157	12.8115
dddd444	chr2:179429209-179429458(+)$1	249	195	202	13.3188
gggg::c	chr7:141464186-141464426(+)$1	240	40	47	13.0289
:::::::	chr3:99569365-99569704(+)$1	339	64	71	13.1014
dd^^^^^	chr2:186657691-186657988(-)$1	297	52	59	13.0289
ddooooo	chr7:141464316-141464582(+)$1	266	185	192	13.0289
dddvvvv	chr19:45911588-45911841(-)$1	253	84	91	12.8115
^^^^^^^	chr1:174417668-174417946(+)$1	278	255	262	17.0869
HHHH:::	chr2:179428326-179428564(+)$1	238	28	35	13.0289
nnnnngg	chr2:179424328-179424551(+)$1	223	87	94	17.0869
c::::::	chr1:91967158-91967409(+)$1	251	41	48	13.1014
:::::::	chr2:179433927-179434165(+)$1	238	195	202	13.3188
eee::ii	chr2:179432051-179432307(+)$1	256	104	111	13.0289
epppppp	chr2:179427974-179428276(+)$1	302	239	246	17.0869
boooooo	chr3:99568181-99568420(+)$1	239	160	167	13.1014
ddd]ddd	chr19:37825980-37826230(+)$1	250	231	238	12.8840
HHHH:::	chr2:179428251-179428494(+)$1	243	103	110	13.0289
EEEKKBB	chr2:179431734-179431942(+)$1	208	52	59	13.1014
{DDDDOO	chr7:141478740-141478990(+)$1	250	10	17	12.8840
:::::::	chr2:179428486-179428730(+)$1	244	212	219	13.0289
@@@@@@@	chr3:99567658-99567918(+)$1	260	227	234	13.0289
hhhhhhh	chr12:95651917-95652162(+)$1	245	90	97	13.0289
eennnnn	chr2:186658169-186658415(-)$1	246	161	168	13.1014
ccooooo	chr6:132030758-132031014(+)$1	256	216	223	17.0869
ooooood	chr2:179424783-179425026(+)$1	243	187	194	17.0869
HHHHHHH	chr6:64451685-64451961(+)$1	276	23	30	12.8115
&&&&&&d	chr5:112228298-112228614(-)$1	316	162	169	13.0289
c[eeeee	chr2:179417392-179417639(+)$1	247	200	207	17.0869
eee[fff	chr7:141464793-141465050(+)$1	257	103	110	17.0869
bbrrrrr	chr6:132031092-132031344(+)$1	252	155	162	17.0869
GGGGGGh	chr2:179432154-179432421(+)$1	267	1	8	13.0289
::::::F	chr2:186661575-186661861(-)$1	286	1	8	13.3188
eeeemmm	chr2:179454384-179454690(+)$1	306	278	285	12.5217
qqqqqqq	chr2:179427145-179427421(+)$1	276	45	52	12.8115
"hhhhhh	chr2:179436909-179437183(+)$1	274	157	164	17.0869
xxxxxxx	chr2:179467093-179467351(+)$1	258	65	72	13.0289
FFF}DDD	chr2:179439742-179439989(+)$1	247	190	197	12.7391
eeeeeii	chr7:141490134-141490384(+)$1	250	164	171	12.5217
hhhhhh[	chr2:186658931-186659169(-)$1	238	210	217	13.0289
33fffff	chr2:97402831-97403074(-)$1	243	53	60	13.3188
ddIIIII	chr2:186654581-186654815(-)$1	234	98	105	13.0289
&&&&&ee	chr2:179408978-179409249(+)$1	271	46	53	12.6666
qqqqqdd	chrX:71427139-71427413(+)$1	274	91	98	13.0289
ggggggc	chr2:179434271-179434507(+)$1	236	30	37	13.0289
^^^^^^^	chr2:186656533-186656769(-)$1	236	42	49	13.1014
llfffff	chr3:99568744-99569040(+)$1	296	37	44	12.6666
eeee555	chr2:186656295-186656601(-)$1	306	148	155	17.0869
:::::::	chr2:240922938-240923228(-)$1	290	4	11	17.0869
LLA{FFF	chr7:141464458-141464712(+)$1	254	43	50	13.0289
mmmmiii	chr2:186661167-186661443(-)$1	276	82	89	17.0869
c::::::	chrX:71425472-71425737(+)$1	265	41	48	13.0289
ccqqqqq	chr2:186661395-186661610(-)$1	215	69	76	12.8840

#DB
)......	chr2:179430836-179431098(+)$1	1	40	47	13.3188
)))...(	chr7:141464064-141464311(+)$1	1	162	169	13.0289
)))...(	chr7:141464134-141464386(+)$1	1	92	99	13.0289
)(((((.	chrX:71426787-71427062(+)$1	1	94	101	12.5217
)))))..	chr2:179431265-179431526(+)$1	1	197	204	17.0869
....)))	chrX:71426744-71426980(+)$1	1	137	144	12.5217
.......	chr3:187896900-187897152(+)$1	1	31	38	13.1014
..(((.(	chr2:179428807-179429090(+)$1	1	240	247	13.0289
.......	chr2:179436510-179436756(+)$1	1	1	8	13.0289
.......	chr10:71914713-71914991(-)$1	1	168	175	13.0289
))))...	chr2:179427441-179427669(+)$1	1	166	173	13.3188
.......	chr2:186658456-186658721(-)$1	1	110	117	17.0869
)))))))	chr7:141464397-141464658(+)$1	1	104	111	13.0289
.......	chr7:141478527-141478762(+)$1	1	223	230	12.8840
....(((	chr2:179428629-179428867(+)$1	1	69	76	13.0289
....)))	chr2:179429669-179429932(+)$1	1	22	29	12.8115
)))....	chr2:186660776-186661060(-)$1	1	53	60	17.0869
.......	chr2:179427040-179427297(+)$1	1	150	157	12.8115
))))...	chr2:179429209-179429458(+)$1	1	195	202	13.3188
))))..(	chr7:141464186-141464426(+)$1	1	40	47	13.0289
.......	chr3:99569365-99569704(+)$1	1	64	71	13.1014
((.....	chr2:186657691-186657988(-)$1	1	52	59	13.0289
((.....	chr7:141464316-141464582(+)$1	1	185	192	13.0289
(((....	chr19:45911588-45911841(-)$1	1	84	91	12.8115
.......	chr1:174417668-174417946(+)$1	1	255	262	17.0869
((((...	chr2:179428326-179428564(+)$1	1	28	35	13.0289
.....))	chr2:179424328-179424551(+)$1	1	87	94	17.0869
)......	chr1:91967158-91967409(+)$1	1	41	48	13.1014
.......	chr2:179433927-179434165(+)$1	1	195	202	13.3188
)))..((	chr2:179432051-179432307(+)$1	1	104	111	13.0289
(......	chr2:179427974-179428276(+)$1	1	239	246	17.0869
(......	chr3:99568181-99568420(+)$1	1	160	167	13.1014
))).)))	chr19:37825980-37826230(+)$1	1	231	238	12.8840
((((...	chr2:179428251-179428494(+)$1	1	103	110	13.0289
(((..((	chr2:179431734-179431942(+)$1	1	52	59	13.1014
.((((..	chr7:141478740-141478990(+)$1	1	10	17	12.8840
.......	chr2:179428486-179428730(+)$1	1	212	219	13.0289
.......	chr3:99567658-99567918(+)$1	1	227	234	13.0289
)))))))	chr12:95651917-95652162(+)$1	1	90	97	13.0289
((.....	chr2:186658169-186658415(-)$1	1	161	168	13.1014
((.....	chr6:132030758-132031014(+)$1	1	216	223	17.0869
......)	chr2:179424783-179425026(+)$1	1	187	194	17.0869
(((((((	chr6:64451685-64451961(+)$1	1	23	30	12.8115
......(	chr5:112228298-112228614(-)$1	1	162	169	13.0289
(.(((((	chr2:179417392-179417639(+)$1	1	200	207	17.0869
(((.(((	chr7:141464793-141465050(+)$1	1	103	110	17.0869
((.....	chr6:132031092-132031344(+)$1	1	155	162	17.0869
(((((((	chr2:179432154-179432421(+)$1	1	1	8	13.0289
......(	chr2:186661575-186661861(-)$1	1	1	8	13.3188
((((...	chr2:179454384-179454690(+)$1	1	278	285	12.5217
.......	chr2:179427145-179427421(+)$1	1	45	52	12.8115
.((((((	chr2:179436909-179437183(+)$1	1	157	164	17.0869
.......	chr2:179467093-179467351(+)$1	1	65	72	13.0289
))).)))	chr2:179439742-179439989(+)$1	1	190	197	12.7391
)))))))	chr7:141490134-141490384(+)$1	1	164	171	12.5217
((((((.	chr2:186658931-186659169(-)$1	1	210	217	13.0289
..)))))	chr2:97402831-97403074(-)$1	1	53	60	13.3188
)))))))	chr2:186654581-186654815(-)$1	1	98	105	13.0289
.....((	chr2:179408978-179409249(+)$1	1	46	53	12.6666
.....))	chrX:71427139-71427413(+)$1	1	91	98	13.0289
(((((((	chr2:179434271-179434507(+)$1	1	30	37	13.0289
.......	chr2:186656533-186656769(-)$1	1	42	49	13.1014
..)))))	chr3:99568744-99569040(+)$1	1	37	44	12.6666
))))...	chr2:186656295-186656601(-)$1	1	148	155	17.0869
.......	chr2:240922938-240923228(-)$1	1	4	11	17.0869
..(.(((	chr7:141464458-141464712(+)$1	1	43	50	13.0289
....)))	chr2:186661167-186661443(-)$1	1	82	89	17.0869
)......	chrX:71425472-71425737(+)$1	1	41	48	13.0289
((.....	chr2:186661395-186661610(-)$1	1	69	76	12.8840

#PSSM
C : 0.82	U : 0.08	A : 0.04	G : 0.02	c : 0.01	
A : 0.88	C : 0.05	U : 0.04	a : 0.01	
U : 0.86	A : 0.07	C : 0.02	G : 0.01	u : 0.01	
U : 0.84	A : 0.05	C : 0.04	G : 0.04	u : 0.01	
U : 0.92	C : 0.02	A : 0.02	u : 0.01	
U : 0.88	A : 0.08	C : 0.01	u : 0.01	
C : 0.88	U : 0.08	A : 0.01	c : 0.01	

#score	957.4057971014482
#seq	69
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_CDS_m3_run2.nuc.txt

#NT
GCACU	chr2:216232486-216232745(-)$1	259	216	221	11.6666
GUACU	chrM:14366-14595(-)$1	229	11	16	11.6666

#otherMatches

#Struct PSSM
eeeee	chrX:132887536-132887814(-)$1	278	23	28	11.6666
ddddm	chr2:216232486-216232745(-)$1	259	216	221	11.6666
d####	chrM:14366-14595(-)$1	229	11	16	11.6666

#DB
)))))	chrX:132887536-132887814(-)$1	1	23	28	11.6666
((((.	chr2:216232486-216232745(-)$1	1	216	221	11.6666
(....	chrM:14366-14595(-)$1	1	11	16	11.6666

#PSSM
G : 1.00	
G : 0.33	C : 0.33	U : 0.33	
A : 1.00	
C : 1.00	
U : 1.00	

#score	35.0
#seq	3
#width	5
#escape	false
#onStep	58
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_transcript_m1_run1.nuc.txt

#NT
Ggugugug	chr11:93454733-93454991(+)$1	258	97	105	17.3333
GGUGUGGA	chr1:113231953-113232207(+)$1	254	108	116	15.5476
GAUGUGGG	chr20:60885227-60885462(-)$1	235	118	126	15.1904
Ggugugug	chr11:93454803-93455081(+)$1	278	27	35	17.3333
GGUGAGUG	chr21:46915219-46915445(+)$1	226	126	134	13.5238
GGUGUGGG	chr20:26189890-26190107(-)$1	217	102	110	19.7142
GGUGAGGG	chr2:11755225-11755468(+)$1	243	190	198	15.9047
gguguggc	chr1:91123325-91123541(+)$1	216	105	113	15.3095
gggguggg	chr17:7082235-7082519(-)$1	284	212	220	16.5000
GGGGUGGG	chr16:30087575-30087857(+)$1	282	113	121	16.5000
GGGGUGGG	chr11:130011740-130012027(+)$1	287	278	286	16.5000
GGUGUGGG	chr16:89959071-89959307(+)$1	236	96	104	19.7142
GGGGUGGG	chr5:176516540-176516794(+)$1	254	184	192	16.5000
GGUGUGUG	chrX:20154132-20154423(-)$1	291	43	51	17.3333
GGGGUGGG	chr20:43029850-43030149(+)$1	299	111	119	16.5000
GGUGUGCG	chr14:21546492-21546748(+)$1	256	167	175	16.6190
GGUGAGUG	chr14:39648306-39648551(+)$1	245	143	151	13.5238
GGAGUGGG	chr12:26985874-26986096(-)$1	222	27	35	15.9047
GGCGUGGG	chr21:9826124-9826355(+)$1	231	138	146	16.0238
GGCGUGGG	chr20:60913049-60913287(-)$1	238	22	30	16.0238
GGUGGGGG	chr2:62932849-62933153(+)$1	304	102	110	15.5476
GGUGUGGG	chr17:27050387-27050607(+)$1	220	149	157	19.7142
GGUGUGGG	chr2:220435706-220435980(-)$1	274	154	162	19.7142
GGGGUGGG	chr7:148717958-148718168(-)$1	210	194	202	16.5000
GGUGCGGG	chr7:148711901-148712129(-)$1	228	183	191	15.5476
GGUGAGUG	chr14:39648426-39648640(+)$1	214	23	31	13.5238
GGUGUGGG	chr20:26189871-26190089(-)$1	218	84	92	19.7142
CGUGUGGG	chr2:133015106-133015364(-)$1	258	95	103	14.9523
gGUGUGCG	chr16:2820155-2820393(+)$1	238	38	46	16.6190
GGUGUGUG	chr12:57567503-57567741(+)$1	238	81	89	17.3333
GGUGUGAG	chr16:78247742-78247956(+)$1	214	77	85	16.3809
GGUGUGGG	chr20:26189854-26190071(-)$1	217	66	74	19.7142
GCUGUGGG	chr9:116958164-116958379(+)$1	215	198	206	15.3095
GGUGUGCG	chr20:62371833-62372101(+)$1	268	81	89	16.6190
GGUGUGGG	chr20:26189907-26190135(-)$1	228	130	138	19.7142
GGUGUGGG	chr20:60905444-60905667(-)$1	223	134	142	19.7142
GCUGUGGG	chr1:35652702-35652951(-)$1	249	52	60	15.3095
GGUGUGGA	chr17:1665246-1665480(+)$1	234	135	143	15.5476
GGUGUGGG	chr17:79971511-79971775(+)$1	264	37	45	19.7142
GGUGUGUG	chr3:49722141-49722410(-)$1	269	192	200	17.3333
GGUGUGGA	chr3:52836262-52836495(+)$1	233	123	131	15.5476

#otherMatches

#Struct PSSM
ddd[dddd	chr1:234565838-234566131(-)$1	293	140	148	17.3333
nffffff]	chr11:93454733-93454991(+)$1	258	97	105	17.3333
cc]dddd2	chr1:113231953-113232207(+)$1	254	108	116	15.5476
:::::hhh	chr20:60885227-60885462(-)$1	235	118	126	15.1904
nffffff]	chr11:93454803-93455081(+)$1	278	27	35	17.3333
e]bb]iii	chr21:46915219-46915445(+)$1	226	126	134	13.5238
]ggggggg	chr20:26189890-26190107(-)$1	217	102	110	19.7142
ccffffff	chr2:11755225-11755468(+)$1	243	190	198	15.9047
ccc]gggg	chr1:91123325-91123541(+)$1	216	105	113	15.3095
hhhhhbb=	chr17:7082235-7082519(-)$1	284	212	220	16.5000
dddbb[bb	chr16:30087575-30087857(+)$1	282	113	121	16.5000
A}FFFFFF	chr11:130011740-130012027(+)$1	287	278	286	16.5000
b]cccA{B	chr16:89959071-89959307(+)$1	236	96	104	19.7142
ggg]dddd	chr5:176516540-176516794(+)$1	254	184	192	16.5000
CCCMMMMI	chrX:20154132-20154423(-)$1	291	43	51	17.3333
ccc[dddd	chr20:43029850-43030149(+)$1	299	111	119	16.5000
dd]bb22d	chr14:21546492-21546748(+)$1	256	167	175	16.6190
pffffff2	chr14:39648306-39648551(+)$1	245	143	151	13.5238
:::CCC{A	chr12:26985874-26986096(-)$1	222	27	35	15.9047
dddd[ccc	chr21:9826124-9826355(+)$1	231	138	146	16.0238
ee[bb[ff	chr20:60913049-60913287(-)$1	238	22	30	16.0238
b[bbnnnn	chr2:62932849-62933153(+)$1	304	102	110	15.5476
ccc[a"""	chr17:27050387-27050607(+)$1	220	149	157	19.7142
JJJeeeee	chr2:220435706-220435980(-)$1	274	154	162	19.7142
cc333eee	chr7:148717958-148718168(-)$1	210	194	202	16.5000
dddd]ddd	chr7:148711901-148712129(-)$1	228	183	191	15.5476
DDDD::EE	chr14:39648426-39648640(+)$1	214	23	31	13.5238
]ggggggg	chr20:26189871-26190089(-)$1	218	84	92	19.7142
eee]gggg	chr2:133015106-133015364(-)$1	258	95	103	14.9523
eeee]ggg	chr16:2820155-2820393(+)$1	238	38	46	16.6190
FFFFF{BB	chr12:57567503-57567741(+)$1	238	81	89	17.3333
dd[a[a[b	chr16:78247742-78247956(+)$1	214	77	85	16.3809
]ggggggg	chr20:26189854-26190071(-)$1	217	66	74	19.7142
]ccc]ggg	chr9:116958164-116958379(+)$1	215	198	206	15.3095
d]a]eeee	chr20:62371833-62372101(+)$1	268	81	89	16.6190
[hhhhhhh	chr20:26189907-26190135(-)$1	228	130	138	19.7142
eeee]bbG	chr20:60905444-60905667(-)$1	223	134	142	19.7142
hh!!bbmm	chr1:35652702-35652951(-)$1	249	52	60	15.3095
ccc::hhh	chr17:1665246-1665480(+)$1	234	135	143	15.5476
ddd!!ggg	chr17:79971511-79971775(+)$1	264	37	45	19.7142
ddd333dd	chr3:49722141-49722410(-)$1	269	192	200	17.3333
FFFFF:::	chr3:52836262-52836495(+)$1	233	123	131	15.5476

#DB
(((.((((	chr1:234565838-234566131(-)$1	1	140	148	17.3333
.)))))).	chr11:93454733-93454991(+)$1	1	97	105	17.3333
)).)))).	chr1:113231953-113232207(+)$1	1	108	116	15.5476
.....(((	chr20:60885227-60885462(-)$1	1	118	126	15.1904
.)))))).	chr11:93454803-93455081(+)$1	1	27	35	17.3333
).)).)))	chr21:46915219-46915445(+)$1	1	126	134	13.5238
.)))))))	chr20:26189890-26190107(-)$1	1	102	110	19.7142
((((((((	chr2:11755225-11755468(+)$1	1	190	198	15.9047
))).))))	chr1:91123325-91123541(+)$1	1	105	113	15.3095
))))))))	chr17:7082235-7082519(-)$1	1	212	220	16.5000
)))((.((	chr16:30087575-30087857(+)$1	1	113	121	16.5000
).))))))	chr11:130011740-130012027(+)$1	1	278	286	16.5000
).)))(.(	chr16:89959071-89959307(+)$1	1	96	104	19.7142
))).))))	chr5:176516540-176516794(+)$1	1	184	192	16.5000
(((....(	chrX:20154132-20154423(-)$1	1	43	51	17.3333
(((.((((	chr20:43029850-43030149(+)$1	1	111	119	16.5000
)).))..)	chr14:21546492-21546748(+)$1	1	167	175	16.6190
.)))))).	chr14:39648306-39648551(+)$1	1	143	151	13.5238
...(((.(	chr12:26985874-26986096(-)$1	1	27	35	15.9047
((((.(((	chr21:9826124-9826355(+)$1	1	138	146	16.0238
((.((.((	chr20:60913049-60913287(-)$1	1	22	30	16.0238
(.((....	chr2:62932849-62933153(+)$1	1	102	110	15.5476
(((.(...	chr17:27050387-27050607(+)$1	1	149	157	19.7142
)))(((((	chr2:220435706-220435980(-)$1	1	154	162	19.7142
))...)))	chr7:148717958-148718168(-)$1	1	194	202	16.5000
)))).)))	chr7:148711901-148712129(-)$1	1	183	191	15.5476
((((..((	chr14:39648426-39648640(+)$1	1	23	31	13.5238
.)))))))	chr20:26189871-26190089(-)$1	1	84	92	19.7142
))).))))	chr2:133015106-133015364(-)$1	1	95	103	14.9523
)))).)))	chr16:2820155-2820393(+)$1	1	38	46	16.6190
(((((.((	chr12:57567503-57567741(+)$1	1	81	89	17.3333
((.(.(.(	chr16:78247742-78247956(+)$1	1	77	85	16.3809
.)))))))	chr20:26189854-26190071(-)$1	1	66	74	19.7142
.))).)))	chr9:116958164-116958379(+)$1	1	198	206	15.3095
).).))))	chr20:62371833-62372101(+)$1	1	81	89	16.6190
.(((((((	chr20:26189907-26190135(-)$1	1	130	138	19.7142
)))).)))	chr20:60905444-60905667(-)$1	1	134	142	19.7142
((..((..	chr1:35652702-35652951(-)$1	1	52	60	15.3095
)))..(((	chr17:1665246-1665480(+)$1	1	135	143	15.5476
(((..(((	chr17:79971511-79971775(+)$1	1	37	45	19.7142
)))...))	chr3:49722141-49722410(-)$1	1	192	200	17.3333
(((((...	chr3:52836262-52836495(+)$1	1	123	131	15.5476

#PSSM
G : 0.90	g : 0.07	C : 0.02	
G : 0.83	g : 0.09	C : 0.04	A : 0.02	
U : 0.71	G : 0.11	u : 0.07	C : 0.04	g : 0.02	A : 0.02	
G : 0.90	g : 0.09	
U : 0.76	u : 0.09	A : 0.09	G : 0.02	C : 0.02	
G : 0.90	g : 0.09	
G : 0.64	U : 0.16	C : 0.07	u : 0.04	g : 0.04	A : 0.02	
G : 0.83	g : 0.07	A : 0.07	c : 0.02	

#score	704.9047619047626
#seq	42
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_CDS_m3_run1.nuc.txt

#NT
AGA	chr19:10229285-10229504(-)$1	219	11	14	8.9999
AGA	chr2:233697507-233697771(+)$1	264	0	3	8.9999
AGA	chr5:68463752-68463990(+)$1	238	13	16	8.9999
AGA	chr16:11935566-11935777(-)$1	211	10	13	8.9999
AGA	chr2:145146937-145147194(-)$1	257	20	23	8.9999
AGA	chr10:127515058-127515269(+)$1	211	13	16	8.9999
AGA	chr3:167747610-167747864(-)$1	254	104	107	8.9999
AGA	chr4:76580913-76581145(-)$1	232	110	113	8.9999
AGA	chr9:102713343-102713681(+)$1	338	71	74	8.9999
AGA	chr1:205687311-205687531(-)$1	220	143	146	8.9999
AGA	chr15:28525117-28525409(-)$1	292	16	19	8.9999
AGA	chr14:94545524-94545847(-)$1	323	10	13	8.9999
AGA	chr18:9535652-9535939(+)$1	287	14	17	8.9999
AGA	chr1:24077877-24078186(+)$1	309	19	22	8.9999
AGA	chr1:52301702-52301984(-)$1	282	33	36	8.9999
AGA	chr19:8530152-8530396(+)$1	244	79	82	8.9999
AGA	chr4:104081682-104081992(-)$1	310	54	57	8.9999
AGA	chr6:160464149-160464414(+)$1	265	34	37	8.9999
AGA	chr3:47734685-47734890(-)$1	205	3	6	8.9999
aga	chr19:39944044-39944262(+)$1	218	10	13	8.9999
AGA	chr2:85133103-85133323(+)$1	220	133	136	8.9999
aga	chr5:140038627-140038850(+)$1	223	1	4	8.9999
AGA	chr12:122966383-122966620(-)$1	237	84	87	8.9999
AGA	chr12:54645754-54646068(-)$1	314	185	188	8.9999
AGA	chr16:3807811-3808140(-)$1	329	27	30	8.9999
AGA	chr9:123232299-123232562(-)$1	263	248	251	8.9999
AGA	chr6:42980573-42980841(-)$1	268	45	48	8.9999
aga	chr22:20050680-20050969(+)$1	289	13	16	8.9999
AGA	chr2:15607350-15607593(-)$1	243	119	122	8.9999
AGA	chr16:89348982-89349253(-)$1	271	74	77	8.9999
AGA	chr2:85768850-85769116(+)$1	266	11	14	8.9999
AGA	chr4:2949924-2950153(-)$1	229	41	44	8.9999
AGA	chr8:41834585-41834882(-)$1	297	35	38	8.9999
AGA	chr6:26156977-26157214(+)$1	237	86	89	8.9999
AGA	chr10:5842503-5842749(-)$1	246	158	161	8.9999
AGA	chr9:37126734-37126998(+)$1	264	23	26	8.9999
AGA	chr1:52344084-52344338(-)$1	254	60	63	8.9999
AGA	chr19:56174871-56175111(+)$1	240	17	20	8.9999
AGA	chr15:41988346-41988635(+)$1	289	7	10	8.9999
AGA	chr12:121783540-121783756(-)$1	216	62	65	8.9999
AGA	chr5:145543868-145544105(-)$1	237	69	72	8.9999
AGA	chr7:127979251-127979475(-)$1	224	98	101	8.9999
AGA	chr16:1748709-1748976(+)$1	267	127	130	8.9999
AGA	chr1:171501939-171502184(+)$1	245	81	84	8.9999
AGA	chr2:71633181-71633500(+)$1	319	84	87	8.9999
aga	chr9:100777547-100777750(+)$1	203	96	99	8.9999
AGA	chr5:6378370-6378625(-)$1	255	52	55	8.9999
AGA	chr4:83277682-83277902(-)$1	220	17	20	8.9999
AGA	chr1:85117486-85117744(-)$1	258	85	88	8.9999
AGA	chr12:118838363-118838596(+)$1	233	21	24	8.9999
AGA	chr3:14239445-14239713(+)$1	268	128	131	8.9999
AGA	chr12:104336994-104337197(+)$1	203	29	32	8.9999
AGA	chr9:95027719-95027935(-)$1	216	166	169	8.9999
AGA	chr20:39728770-39728983(+)$1	213	10	13	8.9999
AGA	chr6:35836766-35836987(-)$1	221	29	32	8.9999
AGA	chr4:57301407-57301761(-)$1	354	7	10	8.9999
AGA	chr19:10505694-10505919(-)$1	225	3	6	8.9999
AGA	chr8:144407576-144407804(-)$1	228	6	9	8.9999
AGA	chr22:36681861-36682083(-)$1	222	148	151	8.9999
AGA	chrX:39923615-39923953(-)$1	338	1	4	8.9999
AGA	chr17:61841272-61841498(-)$1	226	102	105	8.9999
AGA	chr1:180044205-180044449(+)$1	244	11	14	8.9999
AGA	chr9:95484852-95485164(-)$1	312	72	75	8.9999
AGA	chr2:111425281-111425524(-)$1	243	60	63	8.9999
AGA	chr19:11170620-11170837(+)$1	217	29	32	8.9999
AGA	chr5:170816962-170817184(+)$1	222	9	12	8.9999
AGA	chr9:19376206-19376436(-)$1	230	84	87	8.9999
AGA	chrX:13337397-13337664(+)$1	267	43	46	8.9999
AGA	chr17:80674557-80674871(+)$1	314	40	43	8.9999
AGA	chr1:53504485-53504716(+)$1	231	58	61	8.9999
AGA	chr15:44846649-44846869(+)$1	220	181	184	8.9999
AGA	chr9:33276353-33276654(+)$1	301	16	19	8.9999
AGA	chr17:65849986-65850255(+)$1	269	83	86	8.9999
AGA	chr11:71821033-71821352(-)$1	319	1	4	8.9999
AGA	chr17:1563969-1564223(-)$1	254	24	27	8.9999
AGA	chr1:168013756-168014005(+)$1	249	85	88	8.9999
AGA	chr1:36208968-36209229(-)$1	261	101	104	8.9999
AGA	chr1:25071902-25072154(+)$1	252	186	189	8.9999
AGA	chr5:56542851-56543097(+)$1	246	156	159	8.9999
aga	chr1:150207984-150208215(-)$1	231	51	54	8.9999
AGA	chr3:195780224-195780499(-)$1	275	208	211	8.9999
AGA	chr15:69072347-69072553(-)$1	206	23	26	8.9999
AGA	chr7:11101541-11101798(+)$1	257	52	55	8.9999
AGA	chr15:69727933-69728211(+)$1	278	55	58	8.9999
AGA	chr15:89790819-89791040(+)$1	221	88	91	8.9999
AGA	chrX:53588637-53588927(-)$1	290	59	62	8.9999
aga	chr10:15183344-15183663(-)$1	319	154	157	8.9999
AGA	chr14:65390661-65390945(+)$1	284	0	3	8.9999
AGA	chr19:11230679-11230934(+)$1	255	20	23	8.9999
AGA	chr1:200584568-200584839(-)$1	271	3	6	8.9999
AGA	chr19:11113604-11113815(+)$1	211	110	113	8.9999
AGA	chr11:3023096-3023382(-)$1	286	28	31	8.9999
AGA	chr11:9463527-9463795(+)$1	268	155	158	8.9999
AGA	chr1:174188157-174188449(+)$1	292	206	209	8.9999
AGA	chr9:123636732-123637027(-)$1	295	189	192	8.9999

#otherMatches

#Struct PSSM
ddc	chr2:158157162-158157448(+)$1	286	50	53	8.9999
:::	chr19:10229285-10229504(-)$1	219	11	14	8.9999
:::	chr2:233697507-233697771(+)$1	264	0	3	8.9999
CBB	chr5:68463752-68463990(+)$1	238	13	16	8.9999
::E	chr16:11935566-11935777(-)$1	211	10	13	8.9999
:::	chr2:145146937-145147194(-)$1	257	20	23	8.9999
ccc	chr10:127515058-127515269(+)$1	211	13	16	8.9999
5bb	chr3:167747610-167747864(-)$1	254	104	107	8.9999
:FF	chr4:76580913-76581145(-)$1	232	110	113	8.9999
mmd	chr9:102713343-102713681(+)$1	338	71	74	8.9999
ggg	chr1:205687311-205687531(-)$1	220	143	146	8.9999
lbb	chr15:28525117-28525409(-)$1	292	16	19	8.9999
MME	chr14:94545524-94545847(-)$1	323	10	13	8.9999
rdd	chr18:9535652-9535939(+)$1	287	14	17	8.9999
DDD	chr1:24077877-24078186(+)$1	309	19	22	8.9999
ccc	chr1:52301702-52301984(-)$1	282	33	36	8.9999
eff	chr19:8530152-8530396(+)$1	244	79	82	8.9999
[bb	chr4:104081682-104081992(-)$1	310	54	57	8.9999
===	chr6:160464149-160464414(+)$1	265	34	37	8.9999
EEE	chr3:47734685-47734890(-)$1	205	3	6	8.9999
DDD	chr19:39944044-39944262(+)$1	218	10	13	8.9999
:dd	chr2:85133103-85133323(+)$1	220	133	136	8.9999
:::	chr5:140038627-140038850(+)$1	223	1	4	8.9999
:==	chr12:122966383-122966620(-)$1	237	84	87	8.9999
%dd	chr12:54645754-54646068(-)$1	314	185	188	8.9999
ffo	chr16:3807811-3808140(-)$1	329	27	30	8.9999
mdd	chr9:123232299-123232562(-)$1	263	248	251	8.9999
eee	chr6:42980573-42980841(-)$1	268	45	48	8.9999
:::	chr22:20050680-20050969(+)$1	289	13	16	8.9999
hhh	chr2:15607350-15607593(-)$1	243	119	122	8.9999
:::	chr16:89348982-89349253(-)$1	271	74	77	8.9999
lll	chr2:85768850-85769116(+)$1	266	11	14	8.9999
:ee	chr4:2949924-2950153(-)$1	229	41	44	8.9999
fff	chr8:41834585-41834882(-)$1	297	35	38	8.9999
:::	chr6:26156977-26157214(+)$1	237	86	89	8.9999
[ee	chr10:5842503-5842749(-)$1	246	158	161	8.9999
ooo	chr9:37126734-37126998(+)$1	264	23	26	8.9999
FFF	chr1:52344084-52344338(-)$1	254	60	63	8.9999
EEd	chr19:56174871-56175111(+)$1	240	17	20	8.9999
A{C	chr15:41988346-41988635(+)$1	289	7	10	8.9999
FKK	chr12:121783540-121783756(-)$1	216	62	65	8.9999
ee$	chr5:145543868-145544105(-)$1	237	69	72	8.9999
OOO	chr7:127979251-127979475(-)$1	224	98	101	8.9999
CC{	chr16:1748709-1748976(+)$1	267	127	130	8.9999
===	chr1:171501939-171502184(+)$1	245	81	84	8.9999
ggg	chr2:71633181-71633500(+)$1	319	84	87	8.9999
ggg	chr9:100777547-100777750(+)$1	203	96	99	8.9999
FFF	chr5:6378370-6378625(-)$1	255	52	55	8.9999
fff	chr4:83277682-83277902(-)$1	220	17	20	8.9999
cc]	chr1:85117486-85117744(-)$1	258	85	88	8.9999
:::	chr12:118838363-118838596(+)$1	233	21	24	8.9999
eee	chr3:14239445-14239713(+)$1	268	128	131	8.9999
777	chr12:104336994-104337197(+)$1	203	29	32	8.9999
mdd	chr9:95027719-95027935(-)$1	216	166	169	8.9999
FFF	chr20:39728770-39728983(+)$1	213	10	13	8.9999
eee	chr6:35836766-35836987(-)$1	221	29	32	8.9999
MMM	chr4:57301407-57301761(-)$1	354	7	10	8.9999
{BB	chr19:10505694-10505919(-)$1	225	3	6	8.9999
{CC	chr8:144407576-144407804(-)$1	228	6	9	8.9999
:::	chr22:36681861-36682083(-)$1	222	148	151	8.9999
:::	chrX:39923615-39923953(-)$1	338	1	4	8.9999
eee	chr17:61841272-61841498(-)$1	226	102	105	8.9999
FFC	chr1:180044205-180044449(+)$1	244	11	14	8.9999
CC:	chr9:95484852-95485164(-)$1	312	72	75	8.9999
ccc	chr2:111425281-111425524(-)$1	243	60	63	8.9999
:::	chr19:11170620-11170837(+)$1	217	29	32	8.9999
{FF	chr5:170816962-170817184(+)$1	222	9	12	8.9999
ooo	chr9:19376206-19376436(-)$1	230	84	87	8.9999
eel	chrX:13337397-13337664(+)$1	267	43	46	8.9999
:::	chr17:80674557-80674871(+)$1	314	40	43	8.9999
coo	chr1:53504485-53504716(+)$1	231	58	61	8.9999
ZZA	chr15:44846649-44846869(+)$1	220	181	184	8.9999
d[d	chr9:33276353-33276654(+)$1	301	16	19	8.9999
!bb	chr17:65849986-65850255(+)$1	269	83	86	8.9999
:::	chr11:71821033-71821352(-)$1	319	1	4	8.9999
iic	chr17:1563969-1564223(-)$1	254	24	27	8.9999
###	chr1:168013756-168014005(+)$1	249	85	88	8.9999
JJJ	chr1:36208968-36209229(-)$1	261	101	104	8.9999
qqq	chr1:25071902-25072154(+)$1	252	186	189	8.9999
e::	chr5:56542851-56543097(+)$1	246	156	159	8.9999
:::	chr1:150207984-150208215(-)$1	231	51	54	8.9999
2dd	chr3:195780224-195780499(-)$1	275	208	211	8.9999
EEE	chr15:69072347-69072553(-)$1	206	23	26	8.9999
##e	chr7:11101541-11101798(+)$1	257	52	55	8.9999
KKB	chr15:69727933-69728211(+)$1	278	55	58	8.9999
DDD	chr15:89790819-89791040(+)$1	221	88	91	8.9999
eee	chrX:53588637-53588927(-)$1	290	59	62	8.9999
ccc	chr10:15183344-15183663(-)$1	319	154	157	8.9999
:CC	chr14:65390661-65390945(+)$1	284	0	3	8.9999
H{D	chr19:11230679-11230934(+)$1	255	20	23	8.9999
BB{	chr1:200584568-200584839(-)$1	271	3	6	8.9999
ddd	chr19:11113604-11113815(+)$1	211	110	113	8.9999
ppp	chr11:3023096-3023382(-)$1	286	28	31	8.9999
eee	chr11:9463527-9463795(+)$1	268	155	158	8.9999
qqq	chr1:174188157-174188449(+)$1	292	206	209	8.9999
ggg	chr9:123636732-123637027(-)$1	295	189	192	8.9999

#DB
)))	chr2:158157162-158157448(+)$1	1	50	53	8.9999
...	chr19:10229285-10229504(-)$1	1	11	14	8.9999
...	chr2:233697507-233697771(+)$1	1	0	3	8.9999
(((	chr5:68463752-68463990(+)$1	1	13	16	8.9999
..(	chr16:11935566-11935777(-)$1	1	10	13	8.9999
...	chr2:145146937-145147194(-)$1	1	20	23	8.9999
)))	chr10:127515058-127515269(+)$1	1	13	16	8.9999
.))	chr3:167747610-167747864(-)$1	1	104	107	8.9999
.))	chr4:76580913-76581145(-)$1	1	110	113	8.9999
..)	chr9:102713343-102713681(+)$1	1	71	74	8.9999
)))	chr1:205687311-205687531(-)$1	1	143	146	8.9999
.))	chr15:28525117-28525409(-)$1	1	16	19	8.9999
..(	chr14:94545524-94545847(-)$1	1	10	13	8.9999
.))	chr18:9535652-9535939(+)$1	1	14	17	8.9999
(((	chr1:24077877-24078186(+)$1	1	19	22	8.9999
(((	chr1:52301702-52301984(-)$1	1	33	36	8.9999
)))	chr19:8530152-8530396(+)$1	1	79	82	8.9999
.((	chr4:104081682-104081992(-)$1	1	54	57	8.9999
)))	chr6:160464149-160464414(+)$1	1	34	37	8.9999
(((	chr3:47734685-47734890(-)$1	1	3	6	8.9999
(((	chr19:39944044-39944262(+)$1	1	10	13	8.9999
.((	chr2:85133103-85133323(+)$1	1	133	136	8.9999
...	chr5:140038627-140038850(+)$1	1	1	4	8.9999
.((	chr12:122966383-122966620(-)$1	1	84	87	8.9999
.((	chr12:54645754-54646068(-)$1	1	185	188	8.9999
((.	chr16:3807811-3808140(-)$1	1	27	30	8.9999
.))	chr9:123232299-123232562(-)$1	1	248	251	8.9999
(((	chr6:42980573-42980841(-)$1	1	45	48	8.9999
...	chr22:20050680-20050969(+)$1	1	13	16	8.9999
(((	chr2:15607350-15607593(-)$1	1	119	122	8.9999
...	chr16:89348982-89349253(-)$1	1	74	77	8.9999
...	chr2:85768850-85769116(+)$1	1	11	14	8.9999
.((	chr4:2949924-2950153(-)$1	1	41	44	8.9999
)))	chr8:41834585-41834882(-)$1	1	35	38	8.9999
...	chr6:26156977-26157214(+)$1	1	86	89	8.9999
.((	chr10:5842503-5842749(-)$1	1	158	161	8.9999
...	chr9:37126734-37126998(+)$1	1	23	26	8.9999
(((	chr1:52344084-52344338(-)$1	1	60	63	8.9999
(((	chr19:56174871-56175111(+)$1	1	17	20	8.9999
(.(	chr15:41988346-41988635(+)$1	1	7	10	8.9999
(..	chr12:121783540-121783756(-)$1	1	62	65	8.9999
((.	chr5:145543868-145544105(-)$1	1	69	72	8.9999
...	chr7:127979251-127979475(-)$1	1	98	101	8.9999
((.	chr16:1748709-1748976(+)$1	1	127	130	8.9999
(((	chr1:171501939-171502184(+)$1	1	81	84	8.9999
(((	chr2:71633181-71633500(+)$1	1	84	87	8.9999
)))	chr9:100777547-100777750(+)$1	1	96	99	8.9999
(((	chr5:6378370-6378625(-)$1	1	52	55	8.9999
(((	chr4:83277682-83277902(-)$1	1	17	20	8.9999
)).	chr1:85117486-85117744(-)$1	1	85	88	8.9999
...	chr12:118838363-118838596(+)$1	1	21	24	8.9999
)))	chr3:14239445-14239713(+)$1	1	128	131	8.9999
...	chr12:104336994-104337197(+)$1	1	29	32	8.9999
.))	chr9:95027719-95027935(-)$1	1	166	169	8.9999
(((	chr20:39728770-39728983(+)$1	1	10	13	8.9999
)))	chr6:35836766-35836987(-)$1	1	29	32	8.9999
...	chr4:57301407-57301761(-)$1	1	7	10	8.9999
.((	chr19:10505694-10505919(-)$1	1	3	6	8.9999
.((	chr8:144407576-144407804(-)$1	1	6	9	8.9999
...	chr22:36681861-36682083(-)$1	1	148	151	8.9999
...	chrX:39923615-39923953(-)$1	1	1	4	8.9999
)))	chr17:61841272-61841498(-)$1	1	102	105	8.9999
(((	chr1:180044205-180044449(+)$1	1	11	14	8.9999
((.	chr9:95484852-95485164(-)$1	1	72	75	8.9999
(((	chr2:111425281-111425524(-)$1	1	60	63	8.9999
...	chr19:11170620-11170837(+)$1	1	29	32	8.9999
.((	chr5:170816962-170817184(+)$1	1	9	12	8.9999
...	chr9:19376206-19376436(-)$1	1	84	87	8.9999
((.	chrX:13337397-13337664(+)$1	1	43	46	8.9999
...	chr17:80674557-80674871(+)$1	1	40	43	8.9999
(..	chr1:53504485-53504716(+)$1	1	58	61	8.9999
..)	chr15:44846649-44846869(+)$1	1	181	184	8.9999
(.(	chr9:33276353-33276654(+)$1	1	16	19	8.9999
.((	chr17:65849986-65850255(+)$1	1	83	86	8.9999
...	chr11:71821033-71821352(-)$1	1	1	4	8.9999
(((	chr17:1563969-1564223(-)$1	1	24	27	8.9999
...	chr1:168013756-168014005(+)$1	1	85	88	8.9999
(((	chr1:36208968-36209229(-)$1	1	101	104	8.9999
...	chr1:25071902-25072154(+)$1	1	186	189	8.9999
)..	chr5:56542851-56543097(+)$1	1	156	159	8.9999
...	chr1:150207984-150208215(-)$1	1	51	54	8.9999
.))	chr3:195780224-195780499(-)$1	1	208	211	8.9999
(((	chr15:69072347-69072553(-)$1	1	23	26	8.9999
..(	chr7:11101541-11101798(+)$1	1	52	55	8.9999
..(	chr15:69727933-69728211(+)$1	1	55	58	8.9999
)))	chr15:89790819-89791040(+)$1	1	88	91	8.9999
)))	chrX:53588637-53588927(-)$1	1	59	62	8.9999
)))	chr10:15183344-15183663(-)$1	1	154	157	8.9999
.((	chr14:65390661-65390945(+)$1	1	0	3	8.9999
(.(	chr19:11230679-11230934(+)$1	1	20	23	8.9999
((.	chr1:200584568-200584839(-)$1	1	3	6	8.9999
)))	chr19:11113604-11113815(+)$1	1	110	113	8.9999
...	chr11:3023096-3023382(-)$1	1	28	31	8.9999
(((	chr11:9463527-9463795(+)$1	1	155	158	8.9999
...	chr1:174188157-174188449(+)$1	1	206	209	8.9999
(((	chr9:123636732-123637027(-)$1	1	189	192	8.9999

#PSSM
A : 0.93	a : 0.06	
G : 0.93	g : 0.06	
A : 0.93	a : 0.06	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_transcript_m3_run1.nuc.txt

#NT
CCCUGCC	chr5:176737428-176737710(-)$1	282	106	113	16.7377
CCCUCCC	chr19:11557613-11557854(+)$1	241	93	100	12.8032
CUCUGCC	chr16:1545199-1545475(+)$1	276	120	127	12.4754
CCCUGAC	chr19:55556578-55556836(-)$1	258	84	91	12.8852
CCCUGCC	chr1:223949131-223949389(+)$1	258	30	37	16.7377
CCCGGCC	chr16:29813938-29814221(+)$1	283	178	185	12.8032
CCCUGUC	chr4:57319617-57319893(+)$1	276	92	99	12.6393
CCCUGGC	chr6:43037941-43038202(+)$1	261	12	19	12.9672
CCCUGGC	chr12:57036263-57036473(-)$1	210	158	165	12.9672
CUCUGCC	chr7:5568259-5568501(-)$1	242	138	145	12.4754
CCCUGCA	chr16:30773643-30773896(+)$1	253	196	203	12.9672
CCCUGCC	chr15:74704250-74704519(-)$1	269	39	46	16.7377
CCCUGCU	chr22:20097386-20097635(+)$1	249	6	13	12.8852
GCCUGCC	chr20:61917598-61917817(+)$1	219	86	93	12.3114
CCUUGCC	chr17:79658156-79658416(+)$1	260	82	89	12.3934
CCCAGCC	chr14:74763009-74763307(-)$1	298	289	296	12.8032
CCCUGCU	chr8:23425680-23425914(+)$1	234	175	182	12.8852
GCCUGCC	chr8:145624318-145624558(-)$1	240	19	26	12.3114
CCCUGGC	chr19:17295491-17295773(+)$1	282	97	104	12.9672
CCCUGCC	chr3:184041824-184042066(+)$1	242	117	124	16.7377
CCCUGCC	chr17:39925354-39925626(-)$1	272	148	155	16.7377
CCCGGCC	chr12:132631657-132631926(+)$1	269	49	56	12.8032
CCCUGGC	chr2:97541943-97542215(-)$1	272	55	62	12.9672
CCCUGCC	chr16:50338675-50338908(+)$1	233	202	209	16.7377
CCCUGAC	chr14:103986269-103986521(-)$1	252	120	127	12.8852
CCCUUCC	chr7:75145438-75145688(-)$1	250	12	19	12.8032
CCAUGCC	chr6:42976630-42976883(+)$1	253	142	149	12.2295
CCCUCCC	chr19:10270506-10270758(-)$1	252	165	172	12.8032
CCCUGCC	chr7:142564076-142564385(+)$1	309	24	31	16.7377
CCCUGAC	chr22:40802870-40803159(+)$1	289	125	132	12.8852
CCCCGCC	chr20:61438741-61438954(+)$1	213	30	37	12.5573
ccCUGCU	chr19:2043488-2043742(-)$1	254	35	42	12.8852
CCUUGCC	chr14:23370824-23371086(-)$1	262	13	20	12.3934
CCCGGCC	chr16:88958789-88959044(-)$1	255	224	231	12.8032
CCCUGAC	chr9:139887352-139887622(+)$1	270	205	212	12.8852
cccagcc	chr16:89961296-89961550(+)$1	254	49	56	12.8032
CCCUGCA	chr16:2276325-2276573(+)$1	248	149	156	12.9672
CCCUUCC	chr10:76857536-76857796(-)$1	260	39	46	12.8032
CCCUUCC	chr1:150939866-150940108(-)$1	242	156	163	12.8032
cccggcc	chr19:17343284-17343580(-)$1	296	34	41	12.8032
UCCUGCC	chr2:97268464-97268756(-)$1	292	15	22	12.1475
CCCUGCU	chr12:6715502-6715787(-)$1	285	62	69	12.8852
CUCUGCC	chr1:43394556-43394831(-)$1	275	115	122	12.4754
GCCUGCC	chr17:80053225-80053460(-)$1	235	121	128	12.3114
CCGUGCC	chr8:144550712-144550980(-)$1	268	130	137	12.2295
CCCUGCA	chr2:120857678-120857987(+)$1	309	277	284	12.9672
CCCUCCC	chr19:10886226-10886470(+)$1	244	143	150	12.8032
CCCUGCA	chr17:58365947-58366209(-)$1	262	24	31	12.9672
CCCUGCC	chr9:131772360-131772628(-)$1	268	125	132	16.7377
CUCUGCC	chr7:26237211-26237460(-)$1	249	13	20	12.4754
CCCUCCC	chr3:9984832-9985106(+)$1	274	215	222	12.8032
CCCUGCA	chr9:139729954-139730211(+)$1	257	118	125	12.9672
CCUUGCC	chr11:65632177-65632432(+)$1	255	160	167	12.3934
CCCAGCC	chr21:37732102-37732382(+)$1	280	3	10	12.8032
CCCUGCG	chr19:18547562-18547861(-)$1	299	270	277	12.6393
CCCUGGC	chr16:2280522-2280809(+)$1	287	221	228	12.9672
CCCUACC	chr12:122613972-122614259(+)$1	287	67	74	12.5573
CCCUUCC	chr1:155295481-155295729(+)$1	248	4	11	12.8032
CCCUGCC	chr17:26874752-26875065(-)$1	313	175	182	16.7377
CGCUGCC	chr3:128200672-128200948(-)$1	276	142	149	12.2295

#otherMatches

#Struct PSSM
lllccc:	chr19:2041112-2041345(-)$1	233	3	10	12.8032
!bb[eee	chr5:176737428-176737710(-)$1	282	106	113	16.7377
DDD:::F	chr19:11557613-11557854(+)$1	241	93	100	12.8032
clllccc	chr16:1545199-1545475(+)$1	276	120	127	12.4754
dddbb!!	chr19:55556578-55556836(-)$1	258	84	91	12.8852
mmmccc:	chr1:223949131-223949389(+)$1	258	30	37	16.7377
ooooohh	chr16:29813938-29814221(+)$1	283	178	185	12.8032
EEFFFFF	chr4:57319617-57319893(+)$1	276	92	99	12.6393
DDEEEEE	chr6:43037941-43038202(+)$1	261	12	19	12.9672
g:FFFFF	chr12:57036263-57036473(-)$1	210	158	165	12.9672
:ddddnn	chr7:5568259-5568501(-)$1	242	138	145	12.4754
DDDD}AY	chr16:30773643-30773896(+)$1	253	196	203	12.9672
blllbb:	chr15:74704250-74704519(-)$1	269	39	46	16.7377
####eee	chr22:20097386-20097635(+)$1	249	6	13	12.8852
:ffffff	chr20:61917598-61917817(+)$1	219	86	93	12.3114
:::::::	chr17:79658156-79658416(+)$1	260	82	89	12.3934
:::::::	chr14:74763009-74763307(-)$1	298	289	296	12.8032
4444eee	chr8:23425680-23425914(+)$1	234	175	182	12.8852
III:bb"	chr8:145624318-145624558(-)$1	240	19	26	12.3114
444ccc]	chr19:17295491-17295773(+)$1	282	97	104	12.9672
]ddddgg	chr3:184041824-184042066(+)$1	242	117	124	16.7377
JJJJJJZ	chr17:39925354-39925626(-)$1	272	148	155	16.7377
aoooooo	chr12:132631657-132631926(+)$1	269	49	56	12.8032
ccca[cc	chr2:97541943-97542215(-)$1	272	55	62	12.9672
b:::EEE	chr16:50338675-50338908(+)$1	233	202	209	16.7377
fffffee	chr14:103986269-103986521(-)$1	252	120	127	12.8852
:::::::	chr7:75145438-75145688(-)$1	250	12	19	12.8032
EEYYEEE	chr6:42976630-42976883(+)$1	253	142	149	12.2295
cqqqqqq	chr19:10270506-10270758(-)$1	252	165	172	12.8032
mdddd33	chr7:142564076-142564385(+)$1	309	24	31	16.7377
ndddd]c	chr22:40802870-40803159(+)$1	289	125	132	12.8852
ggggg++	chr20:61438741-61438954(+)$1	213	30	37	12.5573
ggggggt	chr19:2043488-2043742(-)$1	254	35	42	12.8852
d[cccnn	chr14:23370824-23371086(-)$1	262	13	20	12.3934
ZZZBB}C	chr16:88958789-88959044(-)$1	255	224	231	12.8032
:eeeeen	chr9:139887352-139887622(+)$1	270	205	212	12.8852
:eeeeem	chr16:89961296-89961550(+)$1	254	49	56	12.8032
ccc5555	chr16:2276325-2276573(+)$1	248	149	156	12.9672
::::::g	chr10:76857536-76857796(-)$1	260	39	46	12.8032
eee::::	chr1:150939866-150940108(-)$1	242	156	163	12.8032
baeeeee	chr19:17343284-17343580(-)$1	296	34	41	12.8032
:dddd[d	chr2:97268464-97268756(-)$1	292	15	22	12.1475
ddd]a22	chr12:6715502-6715787(-)$1	285	62	69	12.8852
ccc[bbd	chr1:43394556-43394831(-)$1	275	115	122	12.4754
d]fffff	chr17:80053225-80053460(-)$1	235	121	128	12.3114
cc]a]cc	chr8:144550712-144550980(-)$1	268	130	137	12.2295
:::ffff	chr2:120857678-120857987(+)$1	309	277	284	12.9672
qqqqqdd	chr19:10886226-10886470(+)$1	244	143	150	12.8032
IIdddd[	chr17:58365947-58366209(-)$1	262	24	31	12.9672
EMMMMDD	chr9:131772360-131772628(-)$1	268	125	132	16.7377
b[cccmm	chr7:26237211-26237460(-)$1	249	13	20	12.4754
bb]bb:H	chr3:9984832-9985106(+)$1	274	215	222	12.8032
JJJJJJJ	chr9:139729954-139730211(+)$1	257	118	125	12.9672
eeeee22	chr11:65632177-65632432(+)$1	255	160	167	12.3934
DDDDEEE	chr21:37732102-37732382(+)$1	280	3	10	12.8032
b======	chr19:18547562-18547861(-)$1	299	270	277	12.6393
FFFFFFZ	chr16:2280522-2280809(+)$1	287	221	228	12.9672
pppppee	chr12:122613972-122614259(+)$1	287	67	74	12.5573
ccc!!dd	chr1:155295481-155295729(+)$1	248	4	11	12.8032
ffffffd	chr17:26874752-26875065(-)$1	313	175	182	16.7377
bb22ddd	chr3:128200672-128200948(-)$1	276	142	149	12.2295

#DB
...))).	chr19:2041112-2041345(-)$1	1	3	10	12.8032
.((.(((	chr5:176737428-176737710(-)$1	1	106	113	16.7377
(((...(	chr19:11557613-11557854(+)$1	1	93	100	12.8032
(...)))	chr16:1545199-1545475(+)$1	1	120	127	12.4754
)))((..	chr19:55556578-55556836(-)$1	1	84	91	12.8852
...))).	chr1:223949131-223949389(+)$1	1	30	37	16.7377
.....))	chr16:29813938-29814221(+)$1	1	178	185	12.8032
(((((((	chr4:57319617-57319893(+)$1	1	92	99	12.6393
(((((((	chr6:43037941-43038202(+)$1	1	12	19	12.9672
).)))))	chr12:57036263-57036473(-)$1	1	158	165	12.9672
.((((..	chr7:5568259-5568501(-)$1	1	138	145	12.4754
)))).).	chr16:30773643-30773896(+)$1	1	196	203	12.9672
(...)).	chr15:74704250-74704519(-)$1	1	39	46	16.7377
....(((	chr22:20097386-20097635(+)$1	1	6	13	12.8852
.((((((	chr20:61917598-61917817(+)$1	1	86	93	12.3114
.......	chr17:79658156-79658416(+)$1	1	82	89	12.3934
.......	chr14:74763009-74763307(-)$1	1	289	296	12.8032
....)))	chr8:23425680-23425914(+)$1	1	175	182	12.8852
(((.((.	chr8:145624318-145624558(-)$1	1	19	26	12.3114
...))).	chr19:17295491-17295773(+)$1	1	97	104	12.9672
.))))))	chr3:184041824-184042066(+)$1	1	117	124	16.7377
)))))).	chr17:39925354-39925626(-)$1	1	148	155	16.7377
(......	chr12:132631657-132631926(+)$1	1	49	56	12.8032
((((.((	chr2:97541943-97542215(-)$1	1	55	62	12.9672
)...)))	chr16:50338675-50338908(+)$1	1	202	209	16.7377
)))))))	chr14:103986269-103986521(-)$1	1	120	127	12.8852
.......	chr7:75145438-75145688(-)$1	1	12	19	12.8032
))..)))	chr6:42976630-42976883(+)$1	1	142	149	12.2295
(......	chr19:10270506-10270758(-)$1	1	165	172	12.8032
.))))..	chr7:142564076-142564385(+)$1	1	24	31	16.7377
.)))).)	chr22:40802870-40803159(+)$1	1	125	132	12.8852
(((((..	chr20:61438741-61438954(+)$1	1	30	37	12.5573
((((((.	chr19:2043488-2043742(-)$1	1	35	42	12.8852
(.(((..	chr14:23370824-23371086(-)$1	1	13	20	12.3934
...)).)	chr16:88958789-88959044(-)$1	1	224	231	12.8032
.(((((.	chr9:139887352-139887622(+)$1	1	205	212	12.8852
.(((((.	chr16:89961296-89961550(+)$1	1	49	56	12.8032
)))....	chr16:2276325-2276573(+)$1	1	149	156	12.9672
......(	chr10:76857536-76857796(-)$1	1	39	46	12.8032
)))....	chr1:150939866-150940108(-)$1	1	156	163	12.8032
)))))))	chr19:17343284-17343580(-)$1	1	34	41	12.8032
.((((.(	chr2:97268464-97268756(-)$1	1	15	22	12.1475
))).)..	chr12:6715502-6715787(-)$1	1	62	69	12.8852
(((.(((	chr1:43394556-43394831(-)$1	1	115	122	12.4754
).)))))	chr17:80053225-80053460(-)$1	1	121	128	12.3114
)).).))	chr8:144550712-144550980(-)$1	1	130	137	12.2295
...((((	chr2:120857678-120857987(+)$1	1	277	284	12.9672
.....))	chr19:10886226-10886470(+)$1	1	143	150	12.8032
((((((.	chr17:58365947-58366209(-)$1	1	24	31	12.9672
(....((	chr9:131772360-131772628(-)$1	1	125	132	16.7377
(.(((..	chr7:26237211-26237460(-)$1	1	13	20	12.4754
)).)).)	chr3:9984832-9985106(+)$1	1	215	222	12.8032
(((((((	chr9:139729954-139730211(+)$1	1	118	125	12.9672
)))))..	chr11:65632177-65632432(+)$1	1	160	167	12.3934
(((((((	chr21:37732102-37732382(+)$1	1	3	10	12.8032
)))))))	chr19:18547562-18547861(-)$1	1	270	277	12.6393
)))))).	chr16:2280522-2280809(+)$1	1	221	228	12.9672
.....))	chr12:122613972-122614259(+)$1	1	67	74	12.5573
(((..((	chr1:155295481-155295729(+)$1	1	4	11	12.8032
))))))(	chr17:26874752-26875065(-)$1	1	175	182	16.7377
))..)))	chr3:128200672-128200948(-)$1	1	142	149	12.2295

#PSSM
C : 0.88	G : 0.04	c : 0.04	U : 0.01	
C : 0.86	U : 0.06	c : 0.04	G : 0.01	
C : 0.88	U : 0.04	c : 0.03	A : 0.01	G : 0.01	
U : 0.85	A : 0.04	G : 0.04	C : 0.01	a : 0.01	g : 0.01	
G : 0.81	C : 0.06	U : 0.06	g : 0.03	A : 0.01	
C : 0.80	G : 0.08	A : 0.06	c : 0.03	U : 0.01	
C : 0.80	A : 0.08	U : 0.06	c : 0.03	G : 0.01	

#score	811.4918032786898
#seq	61
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_CDS_m3_run2.nuc.txt

#NT
CACAGCC	chr2:174820013-174820267(-)$1	254	199	206	13.2131
CCCAGCC	chr5:55237104-55237343(-)$1	239	24	31	17.2295
cccaccc	chr16:69356454-69356758(-)$1	304	12	19	13.0491
CUCAGCC	chr7:139259809-139260053(-)$1	244	171	178	13.0491
CCGAGCC	chr12:9243696-9243914(-)$1	218	6	13	12.5573
cccagcc	chr1:171526830-171527051(+)$1	221	105	112	17.2295
CCCAGCU	chr16:3071777-3072045(+)$1	268	25	32	13.1311
CCCAGUC	chr3:63981137-63981478(+)$1	341	166	173	13.2131
CCCAGAC	chr11:34117923-34118210(+)$1	287	124	131	13.0491
UCCAGCC	chr6:44116500-44116762(+)$1	262	118	125	13.2131
CCCUGCC	chr6:33272926-33273169(-)$1	243	30	37	12.9672
CCCAGCC	chr16:30732410-30732656(+)$1	246	196	203	17.2295
CGCAGCC	chr20:17930684-17930939(-)$1	255	113	120	13.0491
CCCAGGC	chr22:39095737-39096054(-)$1	317	117	124	13.0491
CCCAGCC	chr1:169510486-169510709(-)$1	223	50	57	17.2295
CCCAACC	chr4:110384597-110384900(+)$1	303	189	196	13.0491
CCCAGCC	chr16:71885369-71885638(+)$1	269	186	193	17.2295
ACCAGCC	chrX:40523493-40523789(-)$1	296	166	173	12.9672
CCCUGCC	chr9:110068621-110068945(+)$1	324	151	158	12.9672
CCCAACC	chr14:94849250-94849466(-)$1	216	23	30	13.0491
CCCAGCC	chr2:208632807-208633066(-)$1	259	91	98	17.2295
UCCAGCC	chr3:169846638-169846936(-)$1	298	1	8	13.2131
CCCAGUC	chr16:69727678-69727912(+)$1	234	128	135	13.2131
CCCAGCG	chr19:5244115-5244370(-)$1	255	125	132	13.0491
CCCCGCC	chr3:52559123-52559343(-)$1	220	172	179	12.7213
CCCACCC	chr1:44069339-44069609(+)$1	270	6	13	13.0491
CGCAGCC	chr16:87445401-87445657(-)$1	256	68	75	13.0491
ACCAGCC	chr2:208632564-208632823(-)$1	259	27	34	12.9672
uccagcc	chr20:391058-391365(+)$1	307	32	39	13.2131
CCCAGCU	chr4:57350801-57351116(+)$1	315	179	186	13.1311
CCCAGCU	chr17:17697261-17697529(+)$1	268	18	25	13.1311
CCCAGCC	chr14:21897173-21897435(-)$1	262	206	213	17.2295
CCCAGCA	chr15:73590588-73590906(+)$1	318	117	124	13.1311
CCCAGAC	chr6:138413167-138413422(-)$1	255	62	69	13.0491
CUCAGCC	chr14:21899105-21899362(-)$1	257	119	126	13.0491
CCCAGCC	chr4:83763459-83763715(-)$1	256	93	100	17.2295
UCCAGCC	chr14:24587496-24587828(+)$1	332	276	283	13.2131
CCCAGCC	chr2:21227173-21227398(-)$1	225	179	186	17.2295
CCCAGCC	chr1:169510379-169510631(-)$1	252	242	249	17.2295
CACAGCC	chr12:122247883-122248132(+)$1	249	215	222	13.2131
CCCAGCC	chr10:81070627-81070895(+)$1	268	177	184	17.2295
CCAAGCC	chr3:47165325-47165696(-)$1	371	161	168	12.6393
CCAAGCC	chrX:71492519-71492722(-)$1	203	42	49	12.6393
CCCAGGC	chr12:111893903-111894158(-)$1	255	117	124	13.0491
CCCUGCC	chrM:6376-6586(+)$1	210	46	53	12.9672
CCCACCC	chr6:44117583-44117802(+)$1	219	36	43	13.0491
CCCAGCC	chr6:110935584-110935905(-)$1	321	192	199	17.2295
CCCAGCA	chr15:72511182-72511399(-)$1	217	4	11	13.1311
CCCAGCC	chr6:52878357-52878778(-)$1	421	134	141	17.2295
UCCAGCC	chr3:124731701-124731980(-)$1	279	41	48	13.2131
cacagcc	chr16:14982852-14983080(+)$1	228	17	24	13.2131
CCCAGCC	chr11:61553434-61553649(+)$1	215	131	138	17.2295
CCCAGCC	chr11:61548944-61549185(+)$1	241	102	109	17.2295
CCCAGCA	chr2:242187396-242187628(-)$1	232	117	124	13.1311
CCCAGUC	chr2:109379592-109379835(+)$1	243	102	109	13.2131
CCCAACC	chr3:71026917-71027215(-)$1	298	115	122	13.0491
CCCAGCG	chr21:40190294-40190578(+)$1	284	143	150	13.0491
CCCAUCC	chr2:159481594-159481872(+)$1	278	172	179	12.8852
CCCAGUC	chrX:118923770-118924006(-)$1	236	27	34	13.2131
CACAGCC	chr8:101718796-101719001(-)$1	205	97	104	13.2131

#otherMatches

#Struct PSSM
f:DDDD}	chr4:73957500-73957759(-)$1	259	213	220	12.9672
ssseeee	chr2:174820013-174820267(-)$1	254	199	206	13.2131
!bb[bbd	chr5:55237104-55237343(-)$1	239	24	31	17.2295
EEEE:BB	chr16:69356454-69356758(-)$1	304	12	19	13.0491
>>>>>ff	chr7:139259809-139260053(-)$1	244	171	178	13.0491
EEdddd!	chr12:9243696-9243914(-)$1	218	6	13	12.5573
::ccc""	chr1:171526830-171527051(+)$1	221	105	112	17.2295
ddd[ddd	chr16:3071777-3072045(+)$1	268	25	32	13.1311
:::::::	chr3:63981137-63981478(+)$1	341	166	173	13.2131
dddd:::	chr11:34117923-34118210(+)$1	287	124	131	13.0491
^^^^^^^	chr6:44116500-44116762(+)$1	262	118	125	13.2131
::::FFF	chr6:33272926-33273169(-)$1	243	30	37	12.9672
DDYYCCC	chr16:30732410-30732656(+)$1	246	196	203	17.2295
4eeeeed	chr20:17930684-17930939(-)$1	255	113	120	13.0491
flllfff	chr22:39095737-39096054(-)$1	317	117	124	13.0491
))))bb#	chr1:169510486-169510709(-)$1	223	50	57	17.2295
ee!!ddd	chr4:110384597-110384900(+)$1	303	189	196	13.0491
hbb:hhh	chr16:71885369-71885638(+)$1	269	186	193	17.2295
pdddd]b	chrX:40523493-40523789(-)$1	296	166	173	12.9672
D{DDDDK	chr9:110068621-110068945(+)$1	324	151	158	12.9672
KCCCLLL	chr14:94849250-94849466(-)$1	216	23	30	13.0491
^^^^^^^	chr2:208632807-208633066(-)$1	259	91	98	17.2295
:::CCC:	chr3:169846638-169846936(-)$1	298	1	8	13.2131
444ccc]	chr16:69727678-69727912(+)$1	234	128	135	13.2131
DDDDCCC	chr19:5244115-5244370(-)$1	255	125	132	13.0491
gggggg:	chr3:52559123-52559343(-)$1	220	172	179	12.7213
[bboooo	chr1:44069339-44069609(+)$1	270	6	13	13.0491
ggggggd	chr16:87445401-87445657(-)$1	256	68	75	13.0491
ee!!ccc	chr2:208632564-208632823(-)$1	259	27	34	12.9672
cccxxxx	chr20:391058-391365(+)$1	307	32	39	13.2131
:HHHHHH	chr4:57350801-57351116(+)$1	315	179	186	13.1311
PPPPCCC	chr17:17697261-17697529(+)$1	268	18	25	13.1311
dddd$$$	chr14:21897173-21897435(-)$1	262	206	213	17.2295
c]ccc::	chr15:73590588-73590906(+)$1	318	117	124	13.1311
eeeee++	chr6:138413167-138413422(-)$1	255	62	69	13.0491
LLLCCC{	chr14:21899105-21899362(-)$1	257	119	126	13.0491
FFFFFcc	chr4:83763459-83763715(-)$1	256	93	100	17.2295
ooccc::	chr14:24587496-24587828(+)$1	332	276	283	13.2131
aoooooo	chr2:21227173-21227398(-)$1	225	179	186	17.2295
:::::::	chr1:169510379-169510631(-)$1	252	242	249	17.2295
####ccc	chr12:122247883-122248132(+)$1	249	215	222	13.2131
:::::::	chr10:81070627-81070895(+)$1	268	177	184	17.2295
::::eee	chr3:47165325-47165696(-)$1	371	161	168	12.6393
cc!!eee	chrX:71492519-71492722(-)$1	203	42	49	12.6393
b"""ddd	chr12:111893903-111894158(-)$1	255	117	124	13.0491
^^^^^^^	chrM:6376-6586(+)$1	210	46	53	12.9672
^^^^^^d	chr6:44117583-44117802(+)$1	219	36	43	13.0491
333dddd	chr6:110935584-110935905(-)$1	321	192	199	17.2295
:::DDDD	chr15:72511182-72511399(-)$1	217	4	11	13.1311
ff66666	chr6:52878357-52878778(-)$1	421	134	141	17.2295
GGGGGG:	chr3:124731701-124731980(-)$1	279	41	48	13.2131
!eeeee!	chr16:14982852-14983080(+)$1	228	17	24	13.2131
DDDYYFF	chr11:61553434-61553649(+)$1	215	131	138	17.2295
iiiii$$	chr11:61548944-61549185(+)$1	241	102	109	17.2295
dd]bb]e	chr2:242187396-242187628(-)$1	232	117	124	13.1311
d::::::	chr2:109379592-109379835(+)$1	243	102	109	13.2131
:::::::	chr3:71026917-71027215(-)$1	298	115	122	13.0491
:::cccp	chr21:40190294-40190578(+)$1	284	143	150	13.0491
44eeeee	chr2:159481594-159481872(+)$1	278	172	179	12.8852
"""ffff	chrX:118923770-118924006(-)$1	236	27	34	13.2131
dd[cccn	chr8:101718796-101719001(-)$1	205	97	104	13.2131

#DB
).)))).	chr4:73957500-73957759(-)$1	1	213	220	12.9672
...))))	chr2:174820013-174820267(-)$1	1	199	206	13.2131
.((.(((	chr5:55237104-55237343(-)$1	1	24	31	17.2295
((((.((	chr16:69356454-69356758(-)$1	1	12	19	13.0491
.....))	chr7:139259809-139260053(-)$1	1	171	178	13.0491
((((((.	chr12:9243696-9243914(-)$1	1	6	13	12.5573
..(((..	chr1:171526830-171527051(+)$1	1	105	112	17.2295
(((.(((	chr16:3071777-3072045(+)$1	1	25	32	13.1311
.......	chr3:63981137-63981478(+)$1	1	166	173	13.2131
))))...	chr11:34117923-34118210(+)$1	1	124	131	13.0491
.......	chr6:44116500-44116762(+)$1	1	118	125	13.2131
....(((	chr6:33272926-33273169(-)$1	1	30	37	12.9672
))..)))	chr16:30732410-30732656(+)$1	1	196	203	17.2295
.))))))	chr20:17930684-17930939(-)$1	1	113	120	13.0491
(...)))	chr22:39095737-39096054(-)$1	1	117	124	13.0491
....((.	chr1:169510486-169510709(-)$1	1	50	57	17.2295
((..(((	chr4:110384597-110384900(+)$1	1	189	196	13.0491
))).(((	chr16:71885369-71885638(+)$1	1	186	193	17.2295
.)))).)	chrX:40523493-40523789(-)$1	1	166	173	12.9672
(.((((.	chr9:110068621-110068945(+)$1	1	151	158	12.9672
.(((...	chr14:94849250-94849466(-)$1	1	23	30	13.0491
.......	chr2:208632807-208633066(-)$1	1	91	98	17.2295
...(((.	chr3:169846638-169846936(-)$1	1	1	8	13.2131
...))).	chr16:69727678-69727912(+)$1	1	128	135	13.2131
(((((((	chr19:5244115-5244370(-)$1	1	125	132	13.0491
)))))).	chr3:52559123-52559343(-)$1	1	172	179	12.7213
.((....	chr1:44069339-44069609(+)$1	1	6	13	13.0491
(((((((	chr16:87445401-87445657(-)$1	1	68	75	13.0491
((..(((	chr2:208632564-208632823(-)$1	1	27	34	12.9672
(((....	chr20:391058-391365(+)$1	1	32	39	13.2131
.))))))	chr4:57350801-57351116(+)$1	1	179	186	13.1311
....(((	chr17:17697261-17697529(+)$1	1	18	25	13.1311
((((...	chr14:21897173-21897435(-)$1	1	206	213	17.2295
).)))..	chr15:73590588-73590906(+)$1	1	117	124	13.1311
(((((..	chr6:138413167-138413422(-)$1	1	62	69	13.0491
...(((.	chr14:21899105-21899362(-)$1	1	119	126	13.0491
(((((((	chr4:83763459-83763715(-)$1	1	93	100	17.2295
..)))..	chr14:24587496-24587828(+)$1	1	276	283	13.2131
(......	chr2:21227173-21227398(-)$1	1	179	186	17.2295
.......	chr1:169510379-169510631(-)$1	1	242	249	17.2295
....(((	chr12:122247883-122248132(+)$1	1	215	222	13.2131
.......	chr10:81070627-81070895(+)$1	1	177	184	17.2295
....(((	chr3:47165325-47165696(-)$1	1	161	168	12.6393
((..(((	chrX:71492519-71492722(-)$1	1	42	49	12.6393
(...(((	chr12:111893903-111894158(-)$1	1	117	124	13.0491
.......	chrM:6376-6586(+)$1	1	46	53	12.9672
......)	chr6:44117583-44117802(+)$1	1	36	43	13.0491
...))))	chr6:110935584-110935905(-)$1	1	192	199	17.2295
...((((	chr15:72511182-72511399(-)$1	1	4	11	13.1311
)).....	chr6:52878357-52878778(-)$1	1	134	141	17.2295
((((((.	chr3:124731701-124731980(-)$1	1	41	48	13.2131
.(((((.	chr16:14982852-14983080(+)$1	1	17	24	13.2131
)))..))	chr11:61553434-61553649(+)$1	1	131	138	17.2295
(((((..	chr11:61548944-61549185(+)$1	1	102	109	17.2295
)).)).)	chr2:242187396-242187628(-)$1	1	117	124	13.1311
)......	chr2:109379592-109379835(+)$1	1	102	109	13.2131
.......	chr3:71026917-71027215(-)$1	1	115	122	13.0491
...(((.	chr21:40190294-40190578(+)$1	1	143	150	13.0491
..)))))	chr2:159481594-159481872(+)$1	1	172	179	12.8852
...((((	chrX:118923770-118924006(-)$1	1	27	34	13.2131
((.(((.	chr8:101718796-101719001(-)$1	1	97	104	13.2131

#PSSM
C : 0.83	U : 0.06	c : 0.04	A : 0.03	u : 0.01	
C : 0.81	A : 0.04	c : 0.04	U : 0.03	G : 0.03	a : 0.01	
C : 0.88	c : 0.06	A : 0.03	G : 0.01	
A : 0.85	U : 0.06	a : 0.06	C : 0.01	
G : 0.83	g : 0.04	A : 0.04	C : 0.03	c : 0.01	U : 0.01	
C : 0.80	c : 0.06	U : 0.06	A : 0.03	G : 0.03	
C : 0.80	c : 0.06	U : 0.04	A : 0.04	G : 0.03	

#score	859.0327868852464
#seq	61
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_CDS_m1_run1.nuc.txt

#NT
AAG	chr2:54880658-54880888(+)$1	230	40	43	9.0000
AAG	chr4:151752934-151753229(-)$1	295	2	5	9.0000
AAG	chr10:113933368-113933662(-)$1	294	64	67	9.0000
AAG	chr17:1580343-1580565(-)$1	222	32	35	9.0000
AAG	chr17:37627453-37627705(+)$1	252	70	73	9.0000
AAG	chr13:98670693-98670924(+)$1	231	18	21	9.0000
AAG	chr1:27106121-27106341(+)$1	220	49	52	9.0000
AAG	chr2:112592083-112592351(-)$1	268	1	4	9.0000
AAG	chr1:39914164-39914473(+)$1	309	50	53	9.0000
AAG	chr1:39927559-39927788(+)$1	229	9	12	9.0000
aag	chr6:44218032-44218294(+)$1	262	1	4	9.0000
aag	chr15:42056984-42057222(+)$1	238	18	21	9.0000
AAG	chr1:19446581-19446830(-)$1	249	59	62	9.0000
AAG	chr3:121414531-121414770(-)$1	239	10	13	9.0000
AAG	chr12:124862681-124863003(-)$1	322	76	79	9.0000
AAG	chr10:120803504-120803752(-)$1	248	8	11	9.0000
AAG	chrX:53595641-53595903(-)$1	262	8	11	9.0000
AAG	chr5:154179193-154179419(+)$1	226	23	26	9.0000
AAG	chr17:27023826-27024157(+)$1	331	43	46	9.0000
AAG	chr2:230655772-230656067(-)$1	295	123	126	9.0000
AAG	chr19:41809922-41810192(+)$1	270	172	175	9.0000
aag	chr12:104341056-104341288(+)$1	232	36	39	9.0000
AAG	chr6:7584511-7584744(+)$1	233	38	41	9.0000
AAG	chr6:144779805-144780035(+)$1	230	47	50	9.0000
AAG	chr3:121414657-121414940(-)$1	283	3	6	9.0000
AAG	chr17:65850572-65850874(+)$1	302	20	23	9.0000
AAG	chr17:61842069-61842307(-)$1	238	134	137	9.0000
AAG	chr1:39893574-39893830(+)$1	256	65	68	9.0000
AAG	chr8:103282246-103282511(-)$1	265	62	65	9.0000
AAG	chr10:120809934-120810167(-)$1	233	0	3	9.0000
AAG	chr8:48777203-48777423(-)$1	220	47	50	9.0000
AAG	chr10:120801821-120802095(-)$1	274	74	77	9.0000
AAG	chr17:55183755-55184053(+)$1	298	102	105	9.0000
AAG	chr11:62288557-62288811(-)$1	254	7	10	9.0000
AAG	chr15:42041537-42041779(+)$1	242	6	9	9.0000
AAG	chr20:47592510-47592768(+)$1	258	81	84	9.0000
AAG	chr2:54876745-54876974(+)$1	229	13	16	9.0000
AAG	chr6:56351871-56352169(-)$1	298	60	63	9.0000
AAG	chr11:120350942-120351240(+)$1	298	9	12	9.0000
AAG	chr14:21862036-21862253(-)$1	217	19	22	9.0000
AAG	chr11:118373678-118373912(+)$1	234	22	25	9.0000
AAG	chr6:44217958-44218164(+)$1	206	41	44	9.0000
AAG	chr11:67015687-67015945(+)$1	258	15	18	9.0000
AAG	chr17:27419831-27420106(-)$1	275	30	33	9.0000
AAG	chr17:7411631-7411886(+)$1	255	40	43	9.0000
AAG	chr2:54858493-54858708(+)$1	215	12	15	9.0000
AAG	chr19:6381269-6381538(-)$1	269	93	96	9.0000
AAG	chr11:71715232-71715488(-)$1	256	11	14	9.0000
AAG	chr17:48823246-48823465(+)$1	219	4	7	9.0000
AAG	chr5:151174943-151175212(+)$1	269	34	37	9.0000
AAG	chr20:34078972-34079196(+)$1	224	37	40	9.0000
AAG	chr14:31588816-31589098(-)$1	282	27	30	9.0000
AAG	chr1:39913366-39913669(+)$1	303	10	13	9.0000
AAG	chr2:54857049-54857266(+)$1	217	72	75	9.0000
AAG	chr2:198265458-198265694(-)$1	236	5	8	9.0000
AAG	chr6:56362554-56362778(-)$1	224	4	7	9.0000
AAG	chr8:17819442-17819662(+)$1	220	28	31	9.0000
AAG	chr14:24607462-24607697(+)$1	235	8	11	9.0000
AAG	chr14:56103092-56103354(+)$1	262	18	21	9.0000
AAG	chr20:25459602-25459925(-)$1	323	31	34	9.0000
AAG	chr16:2807416-2807666(+)$1	250	13	16	9.0000
AAG	chr1:39904855-39905112(+)$1	257	2	5	9.0000
aag	chr5:70810674-70810928(+)$1	254	11	14	9.0000
AAG	chr12:49435774-49435989(-)$1	215	30	33	9.0000
AAG	chr13:98670637-98670893(+)$1	256	18	21	9.0000
AAG	chr8:48765134-48765359(-)$1	225	50	53	9.0000
AAG	chr8:48749689-48749946(-)$1	257	57	60	9.0000
AAG	chr12:1017809-1018043(+)$1	234	218	221	9.0000
AAG	chr14:31647271-31647511(-)$1	240	6	9	9.0000
AAG	chr6:56416933-56417183(-)$1	250	0	3	9.0000
AAG	chr2:211507200-211507487(+)$1	287	69	72	9.0000
AAG	chr8:48751675-48751902(-)$1	227	42	45	9.0000
AAG	chr4:13587925-13588191(-)$1	266	0	3	9.0000
AAG	chr1:171501702-171501965(+)$1	263	1	4	9.0000
AAG	chr1:19490647-19490869(-)$1	222	68	71	9.0000
AAG	chr14:56105802-56106038(+)$1	236	24	27	9.0000
AAG	chr1:39847525-39847793(+)$1	268	67	70	9.0000
AAG	chr14:35269327-35269599(-)$1	272	11	14	9.0000
AAG	chr2:55549562-55549817(-)$1	255	5	8	9.0000
AAG	chr6:56373226-56373530(-)$1	304	37	40	9.0000
AAG	chr5:32390360-32390644(-)$1	284	44	47	9.0000
AAG	chr14:31604582-31604793(-)$1	211	28	31	9.0000
AAG	chr9:131356424-131356673(+)$1	249	57	60	9.0000
AAG	chr2:152322007-152322277(+)$1	270	61	64	9.0000
AAG	chr6:7584874-7585137(+)$1	263	7	10	9.0000
AAG	chr6:7246861-7247102(+)$1	241	41	44	9.0000
AAG	chr10:70737192-70737438(+)$1	246	6	9	9.0000
AAG	chr8:95539380-95539692(-)$1	312	59	62	9.0000
AAG	chr14:31602614-31602858(-)$1	244	8	11	9.0000
AAG	chr11:122929054-122929292(-)$1	238	18	21	9.0000
AAG	chr16:9009236-9009480(-)$1	244	55	58	9.0000
AAG	chr6:56347381-56347613(-)$1	232	11	14	9.0000
AAG	chr17:78337419-78337681(+)$1	262	33	36	9.0000
AAG	chrX:53577844-53578072(-)$1	228	106	109	9.0000
AAG	chr14:103430750-103431004(-)$1	254	14	17	9.0000
aag	chr2:102501556-102501834(+)$1	278	4	7	9.0000
AAG	chr11:62297949-62298200(-)$1	251	6	9	9.0000
AAG	chr12:6687577-6687807(-)$1	230	36	39	9.0000
AAG	chrX:53588972-53589204(-)$1	232	47	50	9.0000

#otherMatches

#Struct PSSM
::B	chr12:56563307-56563580(-)$1	273	34	37	9.0000
!!d	chr2:54880658-54880888(+)$1	230	40	43	9.0000
CCC	chr4:151752934-151753229(-)$1	295	2	5	9.0000
"bb	chr10:113933368-113933662(-)$1	294	64	67	9.0000
[hh	chr17:1580343-1580565(-)$1	222	32	35	9.0000
FFF	chr17:37627453-37627705(+)$1	252	70	73	9.0000
IIc	chr13:98670693-98670924(+)$1	231	18	21	9.0000
!!a	chr1:27106121-27106341(+)$1	220	49	52	9.0000
::I	chr2:112592083-112592351(-)$1	268	1	4	9.0000
ggg	chr1:39914164-39914473(+)$1	309	50	53	9.0000
GGG	chr1:39927559-39927788(+)$1	229	9	12	9.0000
:::	chr6:44218032-44218294(+)$1	262	1	4	9.0000
nbb	chr15:42056984-42057222(+)$1	238	18	21	9.0000
BB{	chr1:19446581-19446830(-)$1	249	59	62	9.0000
:::	chr3:121414531-121414770(-)$1	239	10	13	9.0000
ddd	chr12:124862681-124863003(-)$1	322	76	79	9.0000
==[	chr10:120803504-120803752(-)$1	248	8	11	9.0000
ff#	chrX:53595641-53595903(-)$1	262	8	11	9.0000
ooo	chr5:154179193-154179419(+)$1	226	23	26	9.0000
((a	chr17:27023826-27024157(+)$1	331	43	46	9.0000
666	chr2:230655772-230656067(-)$1	295	123	126	9.0000
yyy	chr19:41809922-41810192(+)$1	270	172	175	9.0000
^^^	chr12:104341056-104341288(+)$1	232	36	39	9.0000
qqq	chr6:7584511-7584744(+)$1	233	38	41	9.0000
ddd	chr6:144779805-144780035(+)$1	230	47	50	9.0000
D:d	chr3:121414657-121414940(-)$1	283	3	6	9.0000
LLB	chr17:65850572-65850874(+)$1	302	20	23	9.0000
qqq	chr17:61842069-61842307(-)$1	238	134	137	9.0000
hhh	chr1:39893574-39893830(+)$1	256	65	68	9.0000
:ff	chr8:103282246-103282511(-)$1	265	62	65	9.0000
:::	chr10:120809934-120810167(-)$1	233	0	3	9.0000
:::	chr8:48777203-48777423(-)$1	220	47	50	9.0000
:::	chr10:120801821-120802095(-)$1	274	74	77	9.0000
g""	chr17:55183755-55184053(+)$1	298	102	105	9.0000
::D	chr11:62288557-62288811(-)$1	254	7	10	9.0000
:::	chr15:42041537-42041779(+)$1	242	6	9	9.0000
eBB	chr20:47592510-47592768(+)$1	258	81	84	9.0000
+++	chr2:54876745-54876974(+)$1	229	13	16	9.0000
===	chr6:56351871-56352169(-)$1	298	60	63	9.0000
DDM	chr11:120350942-120351240(+)$1	298	9	12	9.0000
JJJ	chr14:21862036-21862253(-)$1	217	19	22	9.0000
KDD	chr11:118373678-118373912(+)$1	234	22	25	9.0000
b!!	chr6:44217958-44218164(+)$1	206	41	44	9.0000
e:i	chr11:67015687-67015945(+)$1	258	15	18	9.0000
###	chr17:27419831-27420106(-)$1	275	30	33	9.0000
d55	chr17:7411631-7411886(+)$1	255	40	43	9.0000
&&&	chr2:54858493-54858708(+)$1	215	12	15	9.0000
EEE	chr19:6381269-6381538(-)$1	269	93	96	9.0000
:::	chr11:71715232-71715488(-)$1	256	11	14	9.0000
:::	chr17:48823246-48823465(+)$1	219	4	7	9.0000
mma	chr5:151174943-151175212(+)$1	269	34	37	9.0000
TTT	chr20:34078972-34079196(+)$1	224	37	40	9.0000
e$$	chr14:31588816-31589098(-)$1	282	27	30	9.0000
nee	chr1:39913366-39913669(+)$1	303	10	13	9.0000
D{C	chr2:54857049-54857266(+)$1	217	72	75	9.0000
NNN	chr2:198265458-198265694(-)$1	236	5	8	9.0000
:::	chr6:56362554-56362778(-)$1	224	4	7	9.0000
GGG	chr8:17819442-17819662(+)$1	220	28	31	9.0000
nnn	chr14:24607462-24607697(+)$1	235	8	11	9.0000
:dd	chr14:56103092-56103354(+)$1	262	18	21	9.0000
dcc	chr20:25459602-25459925(-)$1	323	31	34	9.0000
sss	chr16:2807416-2807666(+)$1	250	13	16	9.0000
::F	chr1:39904855-39905112(+)$1	257	2	5	9.0000
NNN	chr5:70810674-70810928(+)$1	254	11	14	9.0000
DDD	chr12:49435774-49435989(-)$1	215	30	33	9.0000
hhh	chr13:98670637-98670893(+)$1	256	18	21	9.0000
b[f	chr8:48765134-48765359(-)$1	225	50	53	9.0000
ddd	chr8:48749689-48749946(-)$1	257	57	60	9.0000
???	chr12:1017809-1018043(+)$1	234	218	221	9.0000
GMM	chr14:31647271-31647511(-)$1	240	6	9	9.0000
::c	chr6:56416933-56417183(-)$1	250	0	3	9.0000
ddd	chr2:211507200-211507487(+)$1	287	69	72	9.0000
2bb	chr8:48751675-48751902(-)$1	227	42	45	9.0000
::E	chr4:13587925-13588191(-)$1	266	0	3	9.0000
::D	chr1:171501702-171501965(+)$1	263	1	4	9.0000
qqq	chr1:19490647-19490869(-)$1	222	68	71	9.0000
[ff	chr14:56105802-56106038(+)$1	236	24	27	9.0000
]ee	chr1:39847525-39847793(+)$1	268	67	70	9.0000
fff	chr14:35269327-35269599(-)$1	272	11	14	9.0000
::g	chr2:55549562-55549817(-)$1	255	5	8	9.0000
:::	chr6:56373226-56373530(-)$1	304	37	40	9.0000
D{G	chr5:32390360-32390644(-)$1	284	44	47	9.0000
eee	chr14:31604582-31604793(-)$1	211	28	31	9.0000
ccc	chr9:131356424-131356673(+)$1	249	57	60	9.0000
^^^	chr2:152322007-152322277(+)$1	270	61	64	9.0000
LLL	chr6:7584874-7585137(+)$1	263	7	10	9.0000
qqq	chr6:7246861-7247102(+)$1	241	41	44	9.0000
&&&	chr10:70737192-70737438(+)$1	246	6	9	9.0000
mmm	chr8:95539380-95539692(-)$1	312	59	62	9.0000
ood	chr14:31602614-31602858(-)$1	244	8	11	9.0000
mmm	chr11:122929054-122929292(-)$1	238	18	21	9.0000
:CC	chr16:9009236-9009480(-)$1	244	55	58	9.0000
:EE	chr6:56347381-56347613(-)$1	232	11	14	9.0000
E::	chr17:78337419-78337681(+)$1	262	33	36	9.0000
!!b	chrX:53577844-53578072(-)$1	228	106	109	9.0000
!bb	chr14:103430750-103431004(-)$1	254	14	17	9.0000
:::	chr2:102501556-102501834(+)$1	278	4	7	9.0000
e[a	chr11:62297949-62298200(-)$1	251	6	9	9.0000
eee	chr12:6687577-6687807(-)$1	230	36	39	9.0000
:::	chrX:53588972-53589204(-)$1	232	47	50	9.0000

#DB
..(	chr12:56563307-56563580(-)$1	1	34	37	9.0000
..(	chr2:54880658-54880888(+)$1	1	40	43	9.0000
(((	chr4:151752934-151753229(-)$1	1	2	5	9.0000
.((	chr10:113933368-113933662(-)$1	1	64	67	9.0000
.((	chr17:1580343-1580565(-)$1	1	32	35	9.0000
(((	chr17:37627453-37627705(+)$1	1	70	73	9.0000
(((	chr13:98670693-98670924(+)$1	1	18	21	9.0000
..(	chr1:27106121-27106341(+)$1	1	49	52	9.0000
..(	chr2:112592083-112592351(-)$1	1	1	4	9.0000
(((	chr1:39914164-39914473(+)$1	1	50	53	9.0000
(((	chr1:39927559-39927788(+)$1	1	9	12	9.0000
...	chr6:44218032-44218294(+)$1	1	1	4	9.0000
.))	chr15:42056984-42057222(+)$1	1	18	21	9.0000
((.	chr1:19446581-19446830(-)$1	1	59	62	9.0000
...	chr3:121414531-121414770(-)$1	1	10	13	9.0000
)))	chr12:124862681-124863003(-)$1	1	76	79	9.0000
((.	chr10:120803504-120803752(-)$1	1	8	11	9.0000
((.	chrX:53595641-53595903(-)$1	1	8	11	9.0000
...	chr5:154179193-154179419(+)$1	1	23	26	9.0000
..(	chr17:27023826-27024157(+)$1	1	43	46	9.0000
...	chr2:230655772-230656067(-)$1	1	123	126	9.0000
...	chr19:41809922-41810192(+)$1	1	172	175	9.0000
...	chr12:104341056-104341288(+)$1	1	36	39	9.0000
...	chr6:7584511-7584744(+)$1	1	38	41	9.0000
(((	chr6:144779805-144780035(+)$1	1	47	50	9.0000
(.(	chr3:121414657-121414940(-)$1	1	3	6	9.0000
..(	chr17:65850572-65850874(+)$1	1	20	23	9.0000
...	chr17:61842069-61842307(-)$1	1	134	137	9.0000
)))	chr1:39893574-39893830(+)$1	1	65	68	9.0000
.((	chr8:103282246-103282511(-)$1	1	62	65	9.0000
...	chr10:120809934-120810167(-)$1	1	0	3	9.0000
...	chr8:48777203-48777423(-)$1	1	47	50	9.0000
...	chr10:120801821-120802095(-)$1	1	74	77	9.0000
(..	chr17:55183755-55184053(+)$1	1	102	105	9.0000
..(	chr11:62288557-62288811(-)$1	1	7	10	9.0000
...	chr15:42041537-42041779(+)$1	1	6	9	9.0000
)((	chr20:47592510-47592768(+)$1	1	81	84	9.0000
...	chr2:54876745-54876974(+)$1	1	13	16	9.0000
(((	chr6:56351871-56352169(-)$1	1	60	63	9.0000
((.	chr11:120350942-120351240(+)$1	1	9	12	9.0000
(((	chr14:21862036-21862253(-)$1	1	19	22	9.0000
.((	chr11:118373678-118373912(+)$1	1	22	25	9.0000
(..	chr6:44217958-44218164(+)$1	1	41	44	9.0000
).(	chr11:67015687-67015945(+)$1	1	15	18	9.0000
...	chr17:27419831-27420106(-)$1	1	30	33	9.0000
)..	chr17:7411631-7411886(+)$1	1	40	43	9.0000
...	chr2:54858493-54858708(+)$1	1	12	15	9.0000
)))	chr19:6381269-6381538(-)$1	1	93	96	9.0000
...	chr11:71715232-71715488(-)$1	1	11	14	9.0000
...	chr17:48823246-48823465(+)$1	1	4	7	9.0000
..)	chr5:151174943-151175212(+)$1	1	34	37	9.0000
...	chr20:34078972-34079196(+)$1	1	37	40	9.0000
(..	chr14:31588816-31589098(-)$1	1	27	30	9.0000
.))	chr1:39913366-39913669(+)$1	1	10	13	9.0000
(.(	chr2:54857049-54857266(+)$1	1	72	75	9.0000
...	chr2:198265458-198265694(-)$1	1	5	8	9.0000
...	chr6:56362554-56362778(-)$1	1	4	7	9.0000
(((	chr8:17819442-17819662(+)$1	1	28	31	9.0000
...	chr14:24607462-24607697(+)$1	1	8	11	9.0000
.((	chr14:56103092-56103354(+)$1	1	18	21	9.0000
)))	chr20:25459602-25459925(-)$1	1	31	34	9.0000
...	chr16:2807416-2807666(+)$1	1	13	16	9.0000
..(	chr1:39904855-39905112(+)$1	1	2	5	9.0000
...	chr5:70810674-70810928(+)$1	1	11	14	9.0000
(((	chr12:49435774-49435989(-)$1	1	30	33	9.0000
(((	chr13:98670637-98670893(+)$1	1	18	21	9.0000
(.(	chr8:48765134-48765359(-)$1	1	50	53	9.0000
)))	chr8:48749689-48749946(-)$1	1	57	60	9.0000
...	chr12:1017809-1018043(+)$1	1	218	221	9.0000
(..	chr14:31647271-31647511(-)$1	1	6	9	9.0000
..(	chr6:56416933-56417183(-)$1	1	0	3	9.0000
(((	chr2:211507200-211507487(+)$1	1	69	72	9.0000
.))	chr8:48751675-48751902(-)$1	1	42	45	9.0000
..(	chr4:13587925-13588191(-)$1	1	0	3	9.0000
..(	chr1:171501702-171501965(+)$1	1	1	4	9.0000
...	chr1:19490647-19490869(-)$1	1	68	71	9.0000
.((	chr14:56105802-56106038(+)$1	1	24	27	9.0000
.))	chr1:39847525-39847793(+)$1	1	67	70	9.0000
)))	chr14:35269327-35269599(-)$1	1	11	14	9.0000
..(	chr2:55549562-55549817(-)$1	1	5	8	9.0000
...	chr6:56373226-56373530(-)$1	1	37	40	9.0000
(.(	chr5:32390360-32390644(-)$1	1	44	47	9.0000
(((	chr14:31604582-31604793(-)$1	1	28	31	9.0000
)))	chr9:131356424-131356673(+)$1	1	57	60	9.0000
...	chr2:152322007-152322277(+)$1	1	61	64	9.0000
...	chr6:7584874-7585137(+)$1	1	7	10	9.0000
...	chr6:7246861-7247102(+)$1	1	41	44	9.0000
...	chr10:70737192-70737438(+)$1	1	6	9	9.0000
...	chr8:95539380-95539692(-)$1	1	59	62	9.0000
..)	chr14:31602614-31602858(-)$1	1	8	11	9.0000
...	chr11:122929054-122929292(-)$1	1	18	21	9.0000
.((	chr16:9009236-9009480(-)$1	1	55	58	9.0000
.((	chr6:56347381-56347613(-)$1	1	11	14	9.0000
(..	chr17:78337419-78337681(+)$1	1	33	36	9.0000
..(	chrX:53577844-53578072(-)$1	1	106	109	9.0000
.((	chr14:103430750-103431004(-)$1	1	14	17	9.0000
...	chr2:102501556-102501834(+)$1	1	4	7	9.0000
(.(	chr11:62297949-62298200(-)$1	1	6	9	9.0000
(((	chr12:6687577-6687807(-)$1	1	36	39	9.0000
...	chrX:53588972-53589204(-)$1	1	47	50	9.0000

#PSSM
A : 0.95	a : 0.05	
A : 0.95	a : 0.05	
G : 0.95	g : 0.05	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_CDS_m3_run1.nuc.txt

#NT
UCCUGAUG	chrX:70598647-70598908(+)$1	261	81	89	12.2692
UCGUGUUA	chr12:132248995-132249307(+)$1	312	72	80	10.3461
UCCUCUUA	chr7:151884701-151884951(-)$1	250	132	140	10.6346
UGCUGUUC	chr2:120125663-120125868(+)$1	205	164	172	12.3653
ACCUGUUC	chr2:32668535-32668755(+)$1	220	59	67	11.1153
UACUGUUU	chr2:95783509-95783782(-)$1	273	28	36	12.3653
UCUUGUUU	chr6:90503526-90503772(-)$1	246	207	215	11.6923
UCCUGUAU	chr19:44118334-44118651(-)$1	317	87	95	11.4038
UUCUGUUG	chr15:28424186-28424412(-)$1	226	32	40	12.7500
UCCUGUCU	chr6:144780374-144780590(+)$1	216	139	147	11.3076
UACUGUUG	chr6:146242303-146242622(-)$1	319	64	72	12.3653
UGCUGUUC	chr15:28358661-28358911(-)$1	250	114	122	12.3653
UCAUGUUU	chr15:28356966-28357212(-)$1	246	12	20	11.4038
UCCUGUUG	chr1:19490762-19491021(-)$1	259	44	52	15.7307
UUCUGUUA	chr4:100495909-100496168(+)$1	259	207	215	11.6923
UCCUGCUG	chr16:58571696-58571919(-)$1	223	13	21	12.1730
UCCUUUUG	chr15:28360519-28360781(-)$1	262	51	59	12.3653
UCCUUUUG	chr2:86712752-86713007(+)$1	255	8	16	12.3653
UCCUGCUC	chr17:78237331-78237599(+)$1	268	104	112	12.0769
UCCUGUGU	chr16:2140337-2140594(-)$1	257	12	20	11.4038
UUCUGUUG	chr4:151769869-151770091(-)$1	222	201	209	12.7500
UCCUGAUG	chr6:31855274-31855531(-)$1	257	166	174	12.2692
UCCUGCUU	chr4:122617634-122617880(-)$1	246	101	109	12.1730
UACUGUUC	chr17:65940203-65940473(+)$1	270	196	204	12.2692
UCCAGUUU	chr2:15519782-15520039(-)$1	257	62	70	10.9230
CCCUGUUC	chr4:79176298-79176559(+)$1	261	99	107	11.2115
UCCUGAUG	chr5:140699410-140699685(-)$1	275	217	225	12.2692
UCCUGAUG	chr16:88798186-88798417(-)$1	231	106	114	12.2692
UCCUUUUC	chr6:27100380-27100639(-)$1	259	75	83	12.2692
UCCUGGUU	chr4:141300168-141300400(+)$1	232	207	215	11.9807
UCUUGUUU	chr11:75590880-75591185(+)$1	305	102	110	11.6923
UCUUGUUC	chr4:85701229-85701531(-)$1	302	27	35	11.5961
UGCUGUUG	chr2:153532960-153533239(-)$1	279	42	50	12.4615
UUCUGUUG	chr14:24679489-24679732(-)$1	243	192	200	12.7500
UCCUGUAC	chr12:57605247-57605470(+)$1	223	86	94	11.3076
UCCUGUGA	chr4:79236742-79236977(+)$1	235	16	24	10.3461
UCCUUUUC	chr11:43436167-43436434(+)$1	267	121	129	12.2692
UUCUGUUU	chr10:128796311-128796605(+)$1	294	22	30	12.7500
UCCUUUUC	chr6:90440344-90440556(-)$1	212	140	148	12.2692
UCCUGCUG	chr2:27458059-27458314(+)$1	255	210	218	12.1730
UCUUGUUU	chr14:102471300-102471533(+)$1	233	57	65	11.6923
UCCUUUUU	chr16:18840850-18841114(-)$1	264	25	33	12.3653
UCCUUUUC	chr1:234565815-234566129(-)$1	314	72	80	12.2692
UCCUGGUG	chr16:2143715-2144056(-)$1	341	114	122	11.9807
UCCUGUUU	chr15:63448610-63448821(-)$1	211	12	20	15.7307
UUCUGUUU	chr16:18864803-18865030(-)$1	227	177	185	12.7500
UGCUGUUC	chr9:116997819-116998032(+)$1	213	158	166	12.3653
UUCUGUUC	chr1:35656322-35656646(-)$1	324	151	159	12.6538
GCCUGUUC	chr12:112654737-112654962(-)$1	225	1	9	11.1153
uccuuuuu	chr4:151835345-151835593(-)$1	248	77	85	12.3653
CCCUGUUA	chr6:56350051-56350334(-)$1	283	85	93	10.2500

#otherMatches

#Struct PSSM
ddccc]ee	chr12:120591597-120591812(-)$1	215	71	79	12.2692
2bb]bb]c	chrX:70598647-70598908(+)$1	261	81	89	12.2692
eeee::::	chr12:132248995-132249307(+)$1	312	72	80	10.3461
II::::::	chr7:151884701-151884951(-)$1	250	132	140	10.6346
llbb]ggg	chr2:120125663-120125868(+)$1	205	164	172	12.3653
ccc[ccc[	chr2:32668535-32668755(+)$1	220	59	67	11.1153
EEEE::::	chr2:95783509-95783782(-)$1	273	28	36	12.3653
lllfffff	chr6:90503526-90503772(-)$1	246	207	215	11.6923
ddcccccc	chr19:44118334-44118651(-)$1	317	87	95	11.4038
:ddddlll	chr15:28424186-28424412(-)$1	226	32	40	12.7500
^bb22ddd	chr6:144780374-144780590(+)$1	216	139	147	11.3076
!bbrrrrr	chr6:146242303-146242622(-)$1	319	64	72	12.3653
{EEEEE::	chr15:28358661-28358911(-)$1	250	114	122	12.3653
PPPPCCC{	chr15:28356966-28357212(-)$1	246	12	20	11.4038
$$$bb[cc	chr1:19490762-19491021(-)$1	259	44	52	15.7307
YEEEEE:h	chr4:100495909-100496168(+)$1	259	207	215	11.6923
NNDDDD::	chr16:58571696-58571919(-)$1	223	13	21	12.1730
oooooocc	chr15:28360519-28360781(-)$1	262	51	59	12.3653
========	chr2:86712752-86713007(+)$1	255	8	16	12.3653
ggggggg[	chr17:78237331-78237599(+)$1	268	104	112	12.0769
EEEEE{A{	chr16:2140337-2140594(-)$1	257	12	20	11.4038
]ddddccc	chr4:151769869-151770091(-)$1	222	201	209	12.7500
%%%bb[dd	chr6:31855274-31855531(-)$1	257	166	174	12.2692
????DDDD	chr4:122617634-122617880(-)$1	246	101	109	12.1730
cIIIIIII	chr17:65940203-65940473(+)$1	270	196	204	12.2692
^^ccc]ee	chr2:15519782-15520039(-)$1	257	62	70	10.9230
dllldddd	chr4:79176298-79176559(+)$1	261	99	107	11.2115
DDDD::dd	chr5:140699410-140699685(-)$1	275	217	225	12.2692
[ffffff[	chr16:88798186-88798417(-)$1	231	106	114	12.2692
FF::====	chr6:27100380-27100639(-)$1	259	75	83	12.2692
c333gggg	chr4:141300168-141300400(+)$1	232	207	215	11.9807
eeEEEEE}	chr11:75590880-75591185(+)$1	305	102	110	11.6923
G:::::::	chr4:85701229-85701531(-)$1	302	27	35	11.5961
========	chr2:153532960-153533239(-)$1	279	42	50	12.4615
neeeee33	chr14:24679489-24679732(-)$1	243	192	200	12.7500
ddddd22d	chr12:57605247-57605470(+)$1	223	86	94	11.3076
::::::dd	chr4:79236742-79236977(+)$1	235	16	24	10.3461
^^^^^^^^	chr11:43436167-43436434(+)$1	267	121	129	12.2692
EEEEE{DD	chr10:128796311-128796605(+)$1	294	22	30	12.7500
===:::ee	chr6:90440344-90440556(-)$1	212	140	148	12.2692
::::dddd	chr2:27458059-27458314(+)$1	255	210	218	12.1730
eeccc22g	chr14:102471300-102471533(+)$1	233	57	65	11.6923
qqqhhhhh	chr16:18840850-18841114(-)$1	264	25	33	12.3653
bb]a22dd	chr1:234565815-234566129(-)$1	314	72	80	12.2692
clllccce	chr16:2143715-2144056(-)$1	341	114	122	11.9807
:DDDD{HH	chr15:63448610-63448821(-)$1	211	12	20	15.7307
::DDDD~~	chr16:18864803-18865030(-)$1	227	177	185	12.7500
DYYEEEEE	chr9:116997819-116998032(+)$1	213	158	166	12.3653
gggg[a!!	chr1:35656322-35656646(-)$1	324	151	159	12.6538
EEEEELLL	chr12:112654737-112654962(-)$1	225	1	9	11.1153
d:::::::	chr4:151835345-151835593(-)$1	248	77	85	12.3653
:eeeee$$	chr6:56350051-56350334(-)$1	283	85	93	10.2500

#DB
))))).))	chr12:120591597-120591812(-)$1	1	71	79	12.2692
.)).)).)	chrX:70598647-70598908(+)$1	1	81	89	12.2692
))))....	chr12:132248995-132249307(+)$1	1	72	80	10.3461
((......	chr7:151884701-151884951(-)$1	1	132	140	10.6346
..)).)))	chr2:120125663-120125868(+)$1	1	164	172	12.3653
(((.(((.	chr2:32668535-32668755(+)$1	1	59	67	11.1153
((((....	chr2:95783509-95783782(-)$1	1	28	36	12.3653
...)))))	chr6:90503526-90503772(-)$1	1	207	215	11.6923
((((((((	chr19:44118334-44118651(-)$1	1	87	95	11.4038
.((((...	chr15:28424186-28424412(-)$1	1	32	40	12.7500
.))..)))	chr6:144780374-144780590(+)$1	1	139	147	11.3076
.((.....	chr6:146242303-146242622(-)$1	1	64	72	12.3653
.(((((..	chr15:28358661-28358911(-)$1	1	114	122	12.3653
....(((.	chr15:28356966-28357212(-)$1	1	12	20	11.4038
...((.((	chr1:19490762-19491021(-)$1	1	44	52	15.7307
.))))).(	chr4:100495909-100496168(+)$1	1	207	215	11.6923
..((((..	chr16:58571696-58571919(-)$1	1	13	21	12.1730
......))	chr15:28360519-28360781(-)$1	1	51	59	12.3653
((((((((	chr2:86712752-86713007(+)$1	1	8	16	12.3653
(((((((.	chr17:78237331-78237599(+)$1	1	104	112	12.0769
(((((.(.	chr16:2140337-2140594(-)$1	1	12	20	11.4038
.)))))))	chr4:151769869-151770091(-)$1	1	201	209	12.7500
...((.((	chr6:31855274-31855531(-)$1	1	166	174	12.2692
....))))	chr4:122617634-122617880(-)$1	1	101	109	12.1730
))))))))	chr17:65940203-65940473(+)$1	1	196	204	12.2692
..))).))	chr2:15519782-15520039(-)$1	1	62	70	10.9230
(...))))	chr4:79176298-79176559(+)$1	1	99	107	11.2115
))))..((	chr5:140699410-140699685(-)$1	1	217	225	12.2692
.((((((.	chr16:88798186-88798417(-)$1	1	106	114	12.2692
((..((((	chr6:27100380-27100639(-)$1	1	75	83	12.2692
)...))))	chr4:141300168-141300400(+)$1	1	207	215	11.9807
))))))).	chr11:75590880-75591185(+)$1	1	102	110	11.6923
(.......	chr4:85701229-85701531(-)$1	1	27	35	11.5961
((((((((	chr2:153532960-153533239(-)$1	1	42	50	12.4615
.)))))..	chr14:24679489-24679732(-)$1	1	192	200	12.7500
)))))..)	chr12:57605247-57605470(+)$1	1	86	94	11.3076
......((	chr4:79236742-79236977(+)$1	1	16	24	10.3461
........	chr11:43436167-43436434(+)$1	1	121	129	12.2692
(((((.((	chr10:128796311-128796605(+)$1	1	22	30	12.7500
)))...((	chr6:90440344-90440556(-)$1	1	140	148	12.2692
....((((	chr2:27458059-27458314(+)$1	1	210	218	12.1730
)))))..)	chr14:102471300-102471533(+)$1	1	57	65	11.6923
...)))))	chr16:18840850-18841114(-)$1	1	25	33	12.3653
)).)..))	chr1:234565815-234566129(-)$1	1	72	80	12.2692
(...))))	chr16:2143715-2144056(-)$1	1	114	122	11.9807
.((((.((	chr15:63448610-63448821(-)$1	1	12	20	15.7307
..))))..	chr16:18864803-18865030(-)$1	1	177	185	12.7500
)..)))))	chr9:116997819-116998032(+)$1	1	158	166	12.3653
((((.(..	chr1:35656322-35656646(-)$1	1	151	159	12.6538
(((((...	chr12:112654737-112654962(-)$1	1	1	9	11.1153
).......	chr4:151835345-151835593(-)$1	1	77	85	12.3653
.(((((..	chr6:56350051-56350334(-)$1	1	85	93	10.2500

#PSSM
U : 0.90	C : 0.03	A : 0.01	G : 0.01	u : 0.01	
C : 0.71	U : 0.13	G : 0.07	A : 0.05	c : 0.01	
C : 0.86	U : 0.07	G : 0.01	A : 0.01	c : 0.01	
U : 0.96	A : 0.01	u : 0.01	
G : 0.82	U : 0.13	C : 0.01	u : 0.01	
U : 0.76	A : 0.09	C : 0.07	G : 0.03	u : 0.01	
U : 0.88	A : 0.03	G : 0.03	C : 0.01	u : 0.01	
G : 0.30	C : 0.28	U : 0.28	A : 0.09	u : 0.01	

#score	628.0000000000007
#seq	52
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_UTR_m3_run1.nuc.txt

#NT
gcggggccgggggcgg	chr9:139560094-139560345(+)$1	251	80	96	26.0000
AGGGGGCUGGCUGUGG	chr19:49605894-49606150(+)$1	256	25	41	18.0000
gaggagcuggaggagg	chr6:86352569-86352817(-)$1	248	17	33	24.5000
gcggggcgggcggcgg	chr22:19418955-19419219(-)$1	264	98	114	29.0000
GCGCGGCGGGUGGGGU	chr20:1165115-1165373(-)$1	258	0	16	19.5000
gaggaggaggaggagg	chr4:174253120-174253335(-)$1	215	42	58	22.0000
ccggggcgggccgcgg	chr8:102217355-102217630(-)$1	275	103	119	23.5000
gaggaggaggaggagg	chr4:174253099-174253320(-)$1	221	27	43	22.0000
gcgggccgggccgggg	chr3:128211661-128211906(+)$1	245	18	34	23.0000

#otherMatches

#Struct PSSM
d22hhhhhhhh]ffff	chr18:3450121-3450389(+)$1	268	95	111	21.5000
hhhhhh333eeeee33	chr9:139560094-139560345(+)$1	251	80	96	26.0000
eeee[eeeeeaooooo	chr19:49605894-49606150(+)$1	256	25	41	18.0000
NNGGGGGGGKKALLLC	chr6:86352569-86352817(-)$1	248	17	33	24.5000
DD{DDDD::ccc[bb[	chr22:19418955-19419219(-)$1	264	98	114	29.0000
:eeeee[ddddsssss	chr20:1165115-1165373(-)$1	258	0	16	19.5000
rrbb::::::::::::	chr4:174253120-174253335(-)$1	215	42	58	22.0000
ddd[bbmmmmbb]ddd	chr8:102217355-102217630(-)$1	275	103	119	23.5000
::::::::::::::::	chr4:174253099-174253320(-)$1	221	27	43	22.0000
BBeeeee[dddduuuu	chr3:128211661-128211906(+)$1	245	18	34	23.0000

#DB
)..)))))))).))))	chr18:3450121-3450389(+)$1	1	95	111	21.5000
))))))...)))))..	chr9:139560094-139560345(+)$1	1	80	96	26.0000
((((.((((((.....	chr19:49605894-49606150(+)$1	1	25	41	18.0000
..(((((((..(...(	chr6:86352569-86352817(-)$1	1	17	33	24.5000
((.((((..(((.((.	chr22:19418955-19419219(-)$1	1	98	114	29.0000
.(((((.((((.....	chr20:1165115-1165373(-)$1	1	0	16	19.5000
..))............	chr4:174253120-174253335(-)$1	1	42	58	22.0000
(((.((....)).)))	chr8:102217355-102217630(-)$1	1	103	119	23.5000
................	chr4:174253099-174253320(-)$1	1	27	43	22.0000
(((((((.((((....	chr3:128211661-128211906(+)$1	1	18	34	23.0000

#PSSM
g : 0.60	G : 0.20	A : 0.10	c : 0.10	
c : 0.40	a : 0.30	C : 0.20	G : 0.10	
g : 0.70	G : 0.30	
g : 0.70	G : 0.20	C : 0.10	
g : 0.40	a : 0.30	G : 0.20	A : 0.10	
g : 0.60	G : 0.30	c : 0.10	
c : 0.50	C : 0.20	g : 0.20	A : 0.10	
g : 0.30	G : 0.20	a : 0.20	c : 0.10	U : 0.10	u : 0.10	
g : 0.70	G : 0.30	
g : 0.70	G : 0.30	
a : 0.30	c : 0.30	G : 0.10	g : 0.10	C : 0.10	U : 0.10	
g : 0.50	c : 0.20	A : 0.10	U : 0.10	G : 0.10	
g : 0.70	G : 0.30	
c : 0.30	a : 0.30	G : 0.20	U : 0.10	g : 0.10	
g : 0.70	G : 0.30	
g : 0.70	G : 0.20	U : 0.10	

#score	229.00000000000003
#seq	10
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_CDS_m2_run2.nuc.txt

#NT
UGAGAA	chr14:39650061-39650320(+)$1	259	30	36	15.5000

#otherMatches

#Struct PSSM
::::::	chr1:90493004-90493326(+)$1	322	18	24	15.5000
cccnnn	chr14:39650061-39650320(+)$1	259	30	36	15.5000

#DB
......	chr1:90493004-90493326(+)$1	1	18	24	15.5000
(((...	chr14:39650061-39650320(+)$1	1	30	36	15.5000

#PSSM
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	A : 0.50	

#score	31.0
#seq	2
#width	6
#escape	false
#onStep	79
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_CDS_m2_run1.nuc.txt

#NT
GGGGCCGCCGGGG	chr19:2270384-2270662(+)$1	278	119	132	21.7173
ggcgacggcggcg	chr8:30669812-30670093(-)$1	281	39	52	19.9782
GGGGUCGUCGAGG	chr10:104503647-104503958(+)$1	311	291	304	18.2391
GGGGGUGGGGGCG	chr1:156347907-156348179(+)$1	272	93	106	18.5652
GGGGCGGGCCGGG	chr3:127872217-127872487(+)$1	270	94	107	19.4347
GGGCACGGGGGGG	chr4:1018937-1019174(+)$1	237	217	230	18.7826
gggggcggugggg	chr1:22263566-22263829(-)$1	263	3	16	24.2173
ggggccggugggg	chr14:23790715-23790987(+)$1	272	50	63	23.1304
GGGUUcggcggcg	chr17:30264226-30264479(+)$1	253	116	129	20.1956
ggggccggugggg	chr14:23790612-23790850(+)$1	238	153	166	23.1304
ggggucagcgggg	chr7:100136789-100137104(+)$1	315	219	232	22.8043
GGGGGCGCCGGGG	chr7:128828952-128829223(+)$1	271	1	14	22.8043
GAGGACGGCGGAG	chr17:36760602-36760866(-)$1	264	58	71	18.7826
GGCGUGCGCGGGG	chr1:55352297-55352525(-)$1	228	5	18	16.3913
aggggcggugggg	chr15:90172464-90172739(+)$1	275	42	55	19.6521
GGGGUGGGGGGUG	chr12:104324163-104324407(+)$1	244	67	80	17.8043
ggcgacggcggcg	chr17:48784864-48785161(-)$1	297	68	81	19.9782
gcgggcggcgggg	chr9:136223054-136223330(-)$1	276	33	46	22.9130
gggguggguggcg	chr3:185542646-185542941(-)$1	295	64	77	18.9999
cggggcggccggg	chr3:196730158-196730422(+)$1	264	70	83	18.4565
GGGGGAGGCGGCA	chr6:33179049-33179291(+)$1	242	75	88	17.2608
GGGGUcggcgggg	chr1:244998956-244999252(+)$1	296	110	123	26.8260
GGGGACCGUGGGG	chr1:155658046-155658325(-)$1	279	92	105	19.3260
GGGGAACGCGGGG	chr19:17450229-17450548(+)$1	319	204	217	19.2173
gagggcggcgggc	chr3:52567586-52567856(-)$1	270	35	48	18.6739
GGGAGCGGCGAGG	chr6:30709955-30710261(-)$1	306	55	68	18.8913
GGGGAGGGCGGGC	chr8:144672185-144672436(-)$1	251	88	101	19.7608
GGGGUUGGCGGGG	chr11:9685582-9685850(+)$1	268	115	128	23.8913
GGGGCGGGCGGGG	chr15:42867757-42868041(+)$1	284	56	69	23.7826
GGGGACGGGCGGG	chr3:50374570-50374902(-)$1	332	132	145	18.6739
GGGggcggcggcg	chr10:101379902-101380206(-)$1	304	51	64	24.8695
GGGCCCGGCGAGG	chr6:41747997-41748271(+)$1	274	152	165	17.9130
GGGUUGGGCGGGG	chr8:145693805-145694065(+)$1	260	97	110	20.1956
GGGGUCGGCGGAG	chr2:208576444-208576724(+)$1	280	238	251	23.5652
GGGggcggcggcg	chr6:34856961-34857326(+)$1	365	314	327	24.8695
GGGGUGGGCGCCG	chr14:23528306-23528600(-)$1	294	227	240	18.0217
ggggucagcgggg	chr7:100136904-100137149(+)$1	245	104	117	22.8043
GCGGGCGGCGCGG	chr13:114144716-114145035(-)$1	319	33	46	18.8913
GGUGUGGGCGGUG	chr22:20862357-20862671(+)$1	314	137	150	16.8260
ggggccggugggg	chr14:23790667-23790915(+)$1	248	98	111	23.1304
cggggcggcgcgg	chr7:92077062-92077337(+)$1	275	86	99	18.7826
gggggcggcgggg	chr4:129208690-129208934(-)$1	244	212	225	27.2608
GGGGGUGGCGGGC	chr16:75270539-75270829(-)$1	290	142	155	20.0869
GGCGACGGCGGCG	chr16:69166299-69166541(-)$1	242	83	96	19.9782
GGGGGUAGCGGGG	chr6:32157427-32157684(-)$1	257	106	119	20.3043

#otherMatches

#Struct PSSM
:ggggggg[eeee	chr4:129208548-129208816(-)$1	268	94	107	27.2608
cc[bb[ffffff!	chr19:2270384-2270662(+)$1	278	119	132	21.7173
e[a!!ddddccc"	chr8:30669812-30670093(-)$1	281	39	52	19.9782
cc]ccc]bb:BB}	chr10:104503647-104503958(+)$1	311	291	304	18.2391
ffff!!hhhhhhh	chr1:156347907-156348179(+)$1	272	93	106	18.5652
bb22ccc]cccCC	chr3:127872217-127872487(+)$1	270	94	107	19.4347
ffff]a22aIIII	chr4:1018937-1019174(+)$1	237	217	230	18.7826
:::EEEEE{DDDD	chr1:22263566-22263829(-)$1	263	3	16	24.2173
JJJJJJKKEEEEE	chr14:23790715-23790987(+)$1	272	50	63	23.1304
2eeeee:bb[bbm	chr17:30264226-30264479(+)$1	253	116	129	20.1956
ffffff!!a[bbm	chr14:23790612-23790850(+)$1	238	153	166	23.1304
22iiiiiiiii::	chr7:100136789-100137104(+)$1	315	219	232	22.8043
FFFFFFCCC{BBB	chr7:128828952-128829223(+)$1	271	1	14	22.8043
qqqqbbccc22==	chr17:36760602-36760866(-)$1	264	58	71	18.7826
[bb[a[dddd###	chr1:55352297-55352525(-)$1	228	5	18	16.3913
22bb]aBB{EEEE	chr15:90172464-90172739(+)$1	275	42	55	19.6521
qddddDDDDIIII	chr12:104324163-104324407(+)$1	244	67	80	17.8043
[bbmmmmbb]eee	chr17:48784864-48785161(-)$1	297	68	81	19.9782
eeEEEEE{EEEEE	chr9:136223054-136223330(-)$1	276	33	46	22.9130
========]dddd	chr3:185542646-185542941(-)$1	295	64	77	18.9999
bb]ffffffbb]c	chr3:196730158-196730422(+)$1	264	70	83	18.4565
eee22ccc]ccc:	chr6:33179049-33179291(+)$1	242	75	88	17.2608
ccc]ccc]dddd:	chr1:244998956-244999252(+)$1	296	110	123	26.8260
ggga[ffffff""	chr1:155658046-155658325(-)$1	279	92	105	19.3260
gggggg[bblllb	chr19:17450229-17450548(+)$1	319	204	217	19.2173
ccffffff[eeee	chr3:52567586-52567856(-)$1	270	35	48	18.6739
:EEEEE{A{GGGG	chr6:30709955-30710261(-)$1	306	55	68	18.8913
ccchhhhhhhhcc	chr8:144672185-144672436(-)$1	251	88	101	19.7608
DD{BBdddd[acc	chr11:9685582-9685850(+)$1	268	115	128	23.8913
]a]gggggggfff	chr15:42867757-42868041(+)$1	284	56	69	23.7826
CCCKKBB{DDDDD	chr3:50374570-50374902(-)$1	332	132	145	18.6739
g"""ffffff[a[	chr10:101379902-101380206(-)$1	304	51	64	24.8695
ffGGGGGGG{FFF	chr6:41747997-41748271(+)$1	274	152	165	17.9130
dddd333bb]ddd	chr8:145693805-145694065(+)$1	260	97	110	20.1956
}DDDDYYBBBB}J	chr2:208576444-208576724(+)$1	280	238	251	23.5652
eeeebb[bb[bb[	chr6:34856961-34857326(+)$1	365	314	327	24.8695
dda]bbeeeee::	chr14:23528306-23528600(-)$1	294	227	240	18.0217
22hhhhhhhhbb!	chr7:100136904-100137149(+)$1	245	104	117	22.8043
oobb]dddd]a]b	chr13:114144716-114145035(-)$1	319	33	46	18.8913
gg[bb[a[a!!a[	chr22:20862357-20862671(+)$1	314	137	150	16.8260
ffffff!!a[bbm	chr14:23790667-23790915(+)$1	248	98	111	23.1304
2iiiiiiiii]bb	chr7:92077062-92077337(+)$1	275	86	99	18.7826
[ccc[annnnna]	chr4:129208690-129208934(-)$1	244	212	225	27.2608
====[ccc[bb[c	chr16:75270539-75270829(-)$1	290	142	155	20.0869
bmmmmbb]bb]bb	chr16:69166299-69166541(-)$1	242	83	96	19.9782
bmmmmbb]eeeee	chr6:32157427-32157684(-)$1	257	106	119	20.3043

#DB
.(((((((.((((	chr4:129208548-129208816(-)$1	1	94	107	27.2608
((.((.((((((.	chr19:2270384-2270662(+)$1	1	119	132	21.7173
(.(..(((((((.	chr8:30669812-30670093(-)$1	1	39	52	19.9782
)).))).)).)).	chr10:104503647-104503958(+)$1	1	291	304	18.2391
((((..(((((((	chr1:156347907-156348179(+)$1	1	93	106	18.5652
))..))).)))((	chr3:127872217-127872487(+)$1	1	94	107	19.4347
)))).)..)))))	chr4:1018937-1019174(+)$1	1	217	230	18.7826
...(((((.((((	chr1:22263566-22263829(-)$1	1	3	16	24.2173
((((((..(((((	chr14:23790715-23790987(+)$1	1	50	63	23.1304
.))))).((.((.	chr17:30264226-30264479(+)$1	1	116	129	20.1956
((((((..(.((.	chr14:23790612-23790850(+)$1	1	153	166	23.1304
..)))))))))..	chr7:100136789-100137104(+)$1	1	219	232	22.8043
(((((((((.(((	chr7:128828952-128829223(+)$1	1	1	14	22.8043
....)))))..))	chr17:36760602-36760866(-)$1	1	58	71	18.7826
.((.(.((((...	chr1:55352297-55352525(-)$1	1	5	18	16.3913
..)).)((.((((	chr15:90172464-90172739(+)$1	1	42	55	19.6521
.))))((((((((	chr12:104324163-104324407(+)$1	1	67	80	17.8043
.((....)).)))	chr17:48784864-48785161(-)$1	1	68	81	19.9782
))(((((.(((((	chr9:136223054-136223330(-)$1	1	33	46	22.9130
)))))))).))))	chr3:185542646-185542941(-)$1	1	64	77	18.9999
)).)))))))).)	chr3:196730158-196730422(+)$1	1	70	83	18.4565
)))..))).))).	chr6:33179049-33179291(+)$1	1	75	88	17.2608
))).))).)))).	chr1:244998956-244999252(+)$1	1	110	123	26.8260
((((.((((((..	chr1:155658046-155658325(-)$1	1	92	105	19.3260
((((((.((...)	chr19:17450229-17450548(+)$1	1	204	217	19.2173
((((((((.((((	chr3:52567586-52567856(-)$1	1	35	48	18.6739
.(((((.(.((((	chr6:30709955-30710261(-)$1	1	55	68	18.8913
)))((((((((((	chr8:144672185-144672436(-)$1	1	88	101	19.7608
((.((((((.(((	chr11:9685582-9685850(+)$1	1	115	128	23.8913
.).))))))))))	chr15:42867757-42868041(+)$1	1	56	69	23.7826
(((..((.(((((	chr3:50374570-50374902(-)$1	1	132	145	18.6739
(...((((((.(.	chr10:101379902-101380206(-)$1	1	51	64	24.8695
))(((((((.(((	chr6:41747997-41748271(+)$1	1	152	165	17.9130
))))...)).)))	chr8:145693805-145694065(+)$1	1	97	110	20.1956
.))))..)))).)	chr2:208576444-208576724(+)$1	1	238	251	23.5652
))))((.((.((.	chr6:34856961-34857326(+)$1	1	314	327	24.8695
))).)))))))..	chr14:23528306-23528600(-)$1	1	227	240	18.0217
..))))))))((.	chr7:100136904-100137149(+)$1	1	104	117	22.8043
..)).)))).).)	chr13:114144716-114145035(-)$1	1	33	46	18.8913
((.((.(.(..(.	chr22:20862357-20862671(+)$1	1	137	150	16.8260
((((((..(.((.	chr14:23790667-23790915(+)$1	1	98	111	23.1304
.))))))))).))	chr7:92077062-92077337(+)$1	1	86	99	18.7826
.(((.(.....).	chr4:129208690-129208934(-)$1	1	212	225	27.2608
((((.(((.((.(	chr16:75270539-75270829(-)$1	1	142	155	20.0869
(....)).)).))	chr16:69166299-69166541(-)$1	1	83	96	19.9782
(....)).)))))	chr6:32157427-32157684(-)$1	1	106	119	20.3043

#PSSM
G : 0.65	g : 0.28	c : 0.04	a : 0.02	
G : 0.60	g : 0.30	A : 0.02	c : 0.02	a : 0.02	C : 0.02	
G : 0.58	g : 0.30	c : 0.04	C : 0.04	U : 0.02	
G : 0.49	g : 0.39	C : 0.04	U : 0.04	A : 0.02	
g : 0.21	U : 0.21	G : 0.15	A : 0.15	C : 0.08	c : 0.06	u : 0.06	a : 0.04	
c : 0.41	C : 0.26	G : 0.17	U : 0.08	A : 0.04	g : 0.02	
G : 0.47	g : 0.39	C : 0.06	a : 0.04	A : 0.02	
G : 0.49	g : 0.43	C : 0.04	U : 0.02	
C : 0.45	c : 0.30	u : 0.13	G : 0.08	U : 0.02	
G : 0.52	g : 0.41	C : 0.04	c : 0.02	
G : 0.45	g : 0.41	A : 0.06	C : 0.04	c : 0.02	
G : 0.39	g : 0.30	c : 0.13	C : 0.08	A : 0.04	U : 0.04	
G : 0.49	g : 0.41	C : 0.04	A : 0.02	c : 0.02	

#score	957.0434782608694
#seq	46
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_transcript_m2_run2.nuc.txt

#NT
CUUUAUUUUU	chr7:75958641-75958914(-)$1	273	66	76	16.7924
UUUUCUCUUG	chr2:220047689-220047938(+)$1	249	80	90	16.1320
GUUUCUGUUU	chr17:53398471-53398738(+)$1	267	223	233	15.3773
UUUUUUUUGU	chr1:55315566-55315807(-)$1	241	93	103	17.1698
UUUUCUUUug	chr17:79963812-79964116(+)$1	304	76	86	19.3396
UUUUCUUUUU	chr12:66357128-66357423(+)$1	295	226	236	23.1132
UUGUCUUUCU	chr22:38203127-38203377(+)$1	250	161	171	15.8490
UUUUUUUUUU	chrX:132669805-132670064(-)$1	259	0	10	21.2264
UUUUAUUUUU	chr6:132269607-132269834(-)$1	227	104	114	20.8490
UUUUCUCUUG	chr4:166419235-166419535(+)$1	300	170	180	16.1320
UUUUGUUUUU	chr19:54379270-54379543(+)$1	273	7	17	20.5660
UUUUCUCUCU	chr2:10923910-10924136(-)$1	226	20	30	16.4150
UUGUCCUUUU	chrX:132669701-132670005(-)$1	304	64	74	14.7169
UAUUAUUUUU	chr7:5346604-5346824(-)$1	220	3	13	16.6037
UAUUAUUUUU	chr17:53470261-53470535(-)$1	274	18	28	16.6037
UUUUUUUUUU	chr12:115121456-115121695(-)$1	239	87	97	21.2264
UUAUCUUUUG	chr1:55530327-55530596(+)$1	269	43	53	15.0943
UUUUUUUUUU	chr6:64290887-64291138(+)$1	251	160	170	21.2264
CUUUCUUUUU	chr13:113977557-113977809(+)$1	252	175	185	19.0566
UUUUUUUUAU	chr3:184052904-184053150(+)$1	246	89	99	17.1698
UUGUCUUUUU	chr3:32938487-32938728(+)$1	241	194	204	19.3396
UUUUCUACUU	chr7:103112445-103112647(-)$1	202	58	68	14.6226
UUUUCUUUCU	chr11:130014465-130014727(+)$1	262	13	23	19.6226
uuuucuuuuu	chr2:10476360-10476599(+)$1	239	74	84	23.1132
UUUUCUCUCU	chr2:10923957-10924223(-)$1	266	107	117	16.4150
CUUUCUCUUU	chr17:75212415-75212676(+)$1	261	186	196	15.8490
UUUUAUUUUU	chr5:137088284-137088555(-)$1	271	216	226	20.8490
UUUUACUUUU	chr10:74035504-74035776(+)$1	272	256	266	16.2264
UUUUGUCUUU	chr11:2150274-2150523(-)$1	249	122	132	17.3584
UUUCCUUUUU	chr2:20232539-20232765(-)$1	226	97	107	18.3018
UUUUCUUUUU	chr12:49414160-49414436(-)$1	276	236	246	23.1132
UUUUUUUUUU	chr20:34633684-34633928(-)$1	244	86	96	21.2264
UUUUUUUUUU	chr16:2820990-2821317(+)$1	327	23	33	21.2264
UUUUCUUUUG	chr1:234742446-234742694(-)$1	248	13	23	19.3396
UUUUGUUUCU	chr2:102508245-102508511(+)$1	266	111	121	17.0754
UUUUUUUUUU	chr7:128411251-128411497(+)$1	246	82	92	21.2264
UUUUCUGUUU	chr6:7586604-7586866(+)$1	262	112	122	19.6226
UUUUCUUUUU	chr21:27253073-27253345(-)$1	272	10	20	23.1132
uuuuguuuuu	chr17:18111743-18112013(+)$1	270	36	46	20.5660
UUUUCUUUUA	chr1:169101377-169101671(+)$1	294	222	232	19.0566
UUGUCUUUUC	chr17:39847020-39847272(+)$1	252	1	11	15.1886
GUUUAUUUUU	chr7:45932720-45932952(+)$1	232	138	148	16.6037
UUUUUUUAUU	chr1:43392302-43392551(-)$1	249	74	84	16.5094
UUGUCuuuuu	chr2:43451203-43451453(-)$1	250	193	203	19.3396
UAUUUUUUUU	chr2:43449659-43449893(-)$1	234	73	83	16.9811
UUUUCUUUUA	chr10:120927377-120927654(-)$1	277	77	87	19.0566
uuuucuuuuu	chr2:10476244-10476540(+)$1	296	190	200	23.1132
UUGUCUUUCU	chr22:38203104-38203326(+)$1	222	184	194	15.8490
UUUUCUGUUU	chr19:18390494-18390736(-)$1	242	135	145	19.6226
UUUUCUCUCU	chr2:10923936-10924157(-)$1	221	41	51	16.4150
UAUUUUUUUU	chr11:62392232-62392474(-)$1	242	95	105	16.9811
UUUUCUUUUU	chr4:74286766-74287005(+)$1	239	95	105	23.1132

#otherMatches

#Struct PSSM
BBccc[hhhh	chr16:50613887-50614149(+)$1	262	198	208	15.5660
GG::::::::	chr7:75958641-75958914(-)$1	273	66	76	16.7924
qqqqqqqddd	chr2:220047689-220047938(+)$1	249	80	90	16.1320
g333ccc444	chr17:53398471-53398738(+)$1	267	223	233	15.3773
gEEEEE{HHH	chr1:55315566-55315807(-)$1	241	93	103	17.1698
::::::::::	chr17:79963812-79964116(+)$1	304	76	86	19.3396
G:::::iiii	chr12:66357128-66357423(+)$1	295	226	236	23.1132
ZZDDDDYYDD	chr22:38203127-38203377(+)$1	250	161	171	15.8490
:::::::::g	chrX:132669805-132670064(-)$1	259	0	10	21.2264
'''''''hhh	chr6:132269607-132269834(-)$1	227	104	114	20.8490
ee!!ddddpp	chr4:166419235-166419535(+)$1	300	170	180	16.1320
CKKCCC:===	chr19:54379270-54379543(+)$1	273	7	17	20.5660
MMMBB{FFFF	chr2:10923910-10924136(-)$1	226	20	30	16.4150
KKDDDDLLLH	chrX:132669701-132670005(-)$1	304	64	74	14.7169
::::::::::	chr7:5346604-5346824(-)$1	220	3	13	16.6037
fffff]gggg	chr17:53470261-53470535(-)$1	274	18	28	16.6037
JJJJJJJJJJ	chr12:115121456-115121695(-)$1	239	87	97	21.2264
:::::::::g	chr1:55530327-55530596(+)$1	269	43	53	15.0943
==========	chr6:64290887-64291138(+)$1	251	160	170	21.2264
[ddddnnnnn	chr13:113977557-113977809(+)$1	252	175	185	19.0566
f&&&&&&&ee	chr3:184052904-184053150(+)$1	246	89	99	17.1698
dddd"""ccc	chr3:32938487-32938728(+)$1	241	194	204	19.3396
fff:::dddd	chr7:103112445-103112647(-)$1	202	58	68	14.6226
::::::::::	chr11:130014465-130014727(+)$1	262	13	23	19.6226
lllccc5555	chr2:10476360-10476599(+)$1	239	74	84	23.1132
###eeeee!!	chr2:10923957-10924223(-)$1	266	107	117	16.4150
hhh333bb22	chr17:75212415-75212676(+)$1	261	186	196	15.8490
((cccmmmmc	chr5:137088284-137088555(-)$1	271	216	226	20.8490
>>>iiiiiii	chr10:74035504-74035776(+)$1	272	256	266	16.2264
ggggggg:::	chr11:2150274-2150523(-)$1	249	122	132	17.3584
c]hhhhhhhh	chr2:20232539-20232765(-)$1	226	97	107	18.3018
}JJJJJJJJJ	chr12:49414160-49414436(-)$1	276	236	246	23.1132
^^^^^^^^^^	chr20:34633684-34633928(-)$1	244	86	96	21.2264
=!!eeeee[c	chr16:2820990-2821317(+)$1	327	23	33	21.2264
JJJJJJJJJ:	chr1:234742446-234742694(-)$1	248	13	23	19.3396
=====!!bbm	chr2:102508245-102508511(+)$1	266	111	121	17.0754
oooooodddd	chr7:128411251-128411497(+)$1	246	82	92	21.2264
cc"""ggggg	chr6:7586604-7586866(+)$1	262	112	122	19.6226
RRRRRRRRHH	chr21:27253073-27253345(-)$1	272	10	20	23.1132
ooooodddd4	chr17:18111743-18112013(+)$1	270	36	46	20.5660
::::::::::	chr1:169101377-169101671(+)$1	294	222	232	19.0566
::A{DDDDKK	chr17:39847020-39847272(+)$1	252	1	11	15.1886
ff:::::::E	chr7:45932720-45932952(+)$1	232	138	148	16.6037
::::::::::	chr1:43392302-43392551(-)$1	249	74	84	16.5094
F:::::::::	chr2:43451203-43451453(-)$1	250	193	203	19.3396
hhh55555dd	chr2:43449659-43449893(-)$1	234	73	83	16.9811
mmmbb]eeee	chr10:120927377-120927654(-)$1	277	77	87	19.0566
lllccc5555	chr2:10476244-10476540(+)$1	296	190	200	23.1132
BB}JJJJJJJ	chr22:38203104-38203326(+)$1	222	184	194	15.8490
ffffcccmmm	chr19:18390494-18390736(-)$1	242	135	145	19.6226
###eeeee!!	chr2:10923936-10924157(-)$1	221	41	51	16.4150
========22	chr11:62392232-62392474(-)$1	242	95	105	16.9811
ffff22eeee	chr4:74286766-74287005(+)$1	239	95	105	23.1132

#DB
))(((.((((	chr16:50613887-50614149(+)$1	1	198	208	15.5660
((........	chr7:75958641-75958914(-)$1	1	66	76	16.7924
.......)))	chr2:220047689-220047938(+)$1	1	80	90	16.1320
)...)))...	chr17:53398471-53398738(+)$1	1	223	233	15.3773
)(((((.(((	chr1:55315566-55315807(-)$1	1	93	103	17.1698
..........	chr17:79963812-79964116(+)$1	1	76	86	19.3396
).....((((	chr12:66357128-66357423(+)$1	1	226	236	23.1132
..))))..))	chr22:38203127-38203377(+)$1	1	161	171	15.8490
.........(	chrX:132669805-132670064(-)$1	1	0	10	21.2264
.......(((	chr6:132269607-132269834(-)$1	1	104	114	20.8490
((..((((..	chr4:166419235-166419535(+)$1	1	170	180	16.1320
(..(((.(((	chr19:54379270-54379543(+)$1	1	7	17	20.5660
...((.((((	chr2:10923910-10924136(-)$1	1	20	30	16.4150
..((((...(	chrX:132669701-132670005(-)$1	1	64	74	14.7169
..........	chr7:5346604-5346824(-)$1	1	3	13	16.6037
))))).))))	chr17:53470261-53470535(-)$1	1	18	28	16.6037
))))))))))	chr12:115121456-115121695(-)$1	1	87	97	21.2264
.........(	chr1:55530327-55530596(+)$1	1	43	53	15.0943
((((((((((	chr6:64290887-64291138(+)$1	1	160	170	21.2264
.((((.....	chr13:113977557-113977809(+)$1	1	175	185	19.0566
(.......((	chr3:184052904-184053150(+)$1	1	89	99	17.1698
((((...(((	chr3:32938487-32938728(+)$1	1	194	204	19.3396
)))...((((	chr7:103112445-103112647(-)$1	1	58	68	14.6226
..........	chr11:130014465-130014727(+)$1	1	13	23	19.6226
...)))....	chr2:10476360-10476599(+)$1	1	74	84	23.1132
...(((((..	chr2:10923957-10924223(-)$1	1	107	117	16.4150
)))...))..	chr17:75212415-75212676(+)$1	1	186	196	15.8490
..(((....)	chr5:137088284-137088555(-)$1	1	216	226	20.8490
...)))))))	chr10:74035504-74035776(+)$1	1	256	266	16.2264
)))))))...	chr11:2150274-2150523(-)$1	1	122	132	17.3584
).))))))))	chr2:20232539-20232765(-)$1	1	97	107	18.3018
.)))))))))	chr12:49414160-49414436(-)$1	1	236	246	23.1132
..........	chr20:34633684-34633928(-)$1	1	86	96	21.2264
(..(((((.(	chr16:2820990-2821317(+)$1	1	23	33	21.2264
(((((((((.	chr1:234742446-234742694(-)$1	1	13	23	19.3396
(((((..((.	chr2:102508245-102508511(+)$1	1	111	121	17.0754
......))))	chr7:128411251-128411497(+)$1	1	82	92	21.2264
((...(((((	chr6:7586604-7586866(+)$1	1	112	122	19.6226
........((	chr21:27253073-27253345(-)$1	1	10	20	23.1132
.....)))).	chr17:18111743-18112013(+)$1	1	36	46	20.5660
..........	chr1:169101377-169101671(+)$1	1	222	232	19.0566
..(.((((..	chr17:39847020-39847272(+)$1	1	1	11	15.1886
)).......)	chr7:45932720-45932952(+)$1	1	138	148	16.6037
..........	chr1:43392302-43392551(-)$1	1	74	84	16.5094
).........	chr2:43451203-43451453(-)$1	1	193	203	19.3396
))).....))	chr2:43449659-43449893(-)$1	1	73	83	16.9811
...)).))))	chr10:120927377-120927654(-)$1	1	77	87	19.0566
...)))....	chr2:10476244-10476540(+)$1	1	190	200	23.1132
)).)))))))	chr22:38203104-38203326(+)$1	1	184	194	15.8490
(((((((...	chr19:18390494-18390736(-)$1	1	135	145	19.6226
...(((((..	chr2:10923936-10924157(-)$1	1	41	51	16.4150
))))))))..	chr11:62392232-62392474(-)$1	1	95	105	16.9811
))))..))))	chr4:74286766-74287005(+)$1	1	95	105	23.1132

#PSSM
U : 0.83	C : 0.07	u : 0.05	G : 0.03	
U : 0.86	A : 0.07	u : 0.05	
U : 0.81	G : 0.11	u : 0.05	A : 0.01	
U : 0.92	u : 0.05	C : 0.01	
C : 0.54	U : 0.20	A : 0.13	G : 0.05	c : 0.03	g : 0.01	
U : 0.88	u : 0.07	C : 0.03	
U : 0.69	C : 0.13	G : 0.07	u : 0.07	A : 0.01	
U : 0.88	u : 0.07	C : 0.01	A : 0.01	
U : 0.73	C : 0.13	u : 0.09	G : 0.01	A : 0.01	
U : 0.77	G : 0.07	u : 0.07	A : 0.03	g : 0.01	C : 0.01	

#score	982.264150943396
#seq	53
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_UTR_m2_run2.nuc.txt

#NT
UGU	chrX:154306758-154307016(+)$1	258	21	24	8.9999
ugu	chr17:80426486-80426774(+)$1	288	14	17	8.9999
ugu	chr14:55615071-55615338(-)$1	267	28	31	8.9999
UGU	chr5:179956135-179956418(+)$1	283	80	83	8.9999
UGU	chr3:48719860-48720135(-)$1	275	11	14	8.9999
UGU	chr5:141009382-141009660(-)$1	278	152	155	8.9999
UGU	chr9:4985791-4986063(+)$1	272	15	18	8.9999
UGU	chr17:17718150-17718411(-)$1	261	30	33	8.9999
UGU	chr19:42399264-42399536(+)$1	272	50	53	8.9999
UGU	chr22:26922098-26922380(-)$1	282	64	67	8.9999
ugu	chr22:42301325-42301544(+)$1	219	24	27	8.9999
UGU	chr12:125398245-125398473(-)$1	228	31	34	8.9999
UGU	chr7:77236410-77236700(+)$1	290	6	9	8.9999
UGU	chr11:47858437-47858700(-)$1	263	1	4	8.9999
UGU	chr17:8168065-8168357(+)$1	292	28	31	8.9999
UGU	chr16:71958513-71958848(+)$1	335	50	53	8.9999
UGU	chr5:174938960-174939235(+)$1	275	155	158	8.9999
UGU	chr3:9974148-9974404(+)$1	256	76	79	8.9999
UGU	chr16:4391390-4391706(-)$1	316	16	19	8.9999
UGU	chr12:122613972-122614259(+)$1	287	6	9	8.9999
UGU	chr22:26866666-26866938(-)$1	272	25	28	8.9999
UGU	chr15:58925420-58925714(-)$1	294	24	27	8.9999
UGU	chr9:130953005-130953289(-)$1	284	30	33	8.9999
UGU	chr3:12626343-12626629(-)$1	286	16	19	8.9999
UGU	chr6:31931049-31931300(+)$1	251	9	12	8.9999
UGU	chr17:34852132-34852419(-)$1	287	5	8	8.9999
UGU	chr6:43492583-43492860(-)$1	277	124	127	8.9999
UGU	chr11:68170794-68171053(+)$1	259	1	4	8.9999
UGU	chr6:31638723-31638963(+)$1	240	21	24	8.9999
UGU	chr16:23504652-23504926(-)$1	274	18	21	8.9999
ugu	chr16:31201944-31202177(+)$1	233	0	3	8.9999
UGU	chr18:47017867-47018094(-)$1	227	61	64	8.9999
UGU	chr1:183933016-183933317(-)$1	301	61	64	8.9999
UGU	chr5:78915318-78915573(+)$1	255	11	14	8.9999
UGU	chrX:153583327-153583613(-)$1	286	62	65	8.9999
UGU	chr17:7221382-7221640(-)$1	258	54	57	8.9999
UGU	chr7:23357217-23357477(-)$1	260	70	73	8.9999
UGU	chr13:115002129-115002394(+)$1	265	107	110	8.9999
UGU	chrX:135958688-135958932(-)$1	244	79	82	8.9999
UGU	chr12:7024824-7025118(+)$1	294	173	176	8.9999
UGU	chr1:1684393-1684645(-)$1	252	186	189	8.9999
UGU	chr17:80207339-80207624(-)$1	285	10	13	8.9999
UGU	chr19:46357674-46357937(-)$1	263	89	92	8.9999
UGU	chr2:38527366-38527624(-)$1	258	12	15	8.9999
UGU	chr17:79683624-79683858(+)$1	234	53	56	8.9999
UGU	chr20:61906814-61907059(+)$1	245	24	27	8.9999
UGU	chr17:34863654-34863915(-)$1	261	14	17	8.9999
UGU	chr11:118967885-118968162(-)$1	277	221	224	8.9999
UGU	chr22:20073093-20073311(+)$1	218	29	32	8.9999
UGU	chr22:19841959-19842247(-)$1	288	81	84	8.9999
UGU	chr16:50342430-50342717(+)$1	287	110	113	8.9999
UGU	chr20:48699327-48699576(-)$1	249	79	82	8.9999
UGU	chr19:11030952-11031218(+)$1	266	1	4	8.9999
UGU	chr9:139729954-139730211(+)$1	257	20	23	8.9999
UGU	chr3:184033026-184033269(+)$1	243	69	72	8.9999
UGU	chr11:62378925-62379203(-)$1	278	51	54	8.9999
UGU	chr9:130996139-130996464(+)$1	325	40	43	8.9999
UGU	chr12:30872050-30872306(-)$1	256	2	5	8.9999
UGU	chr3:156868066-156868324(-)$1	258	15	18	8.9999
UGU	chr17:26966535-26966808(-)$1	273	56	59	8.9999
UGU	chr19:12800333-12800613(-)$1	280	64	67	8.9999
UGU	chr19:15480800-15481086(-)$1	286	39	42	8.9999
UGU	chr3:47851985-47852282(+)$1	297	86	89	8.9999
UGU	chr3:132297598-132297869(-)$1	271	70	73	8.9999
UGU	chr20:44521714-44521968(+)$1	254	134	137	8.9999
UGU	chr19:1388373-1388673(+)$1	300	25	28	8.9999
UGU	chr12:112478255-112478545(-)$1	290	93	96	8.9999
UGU	chr16:21973629-21973958(+)$1	329	10	13	8.9999
UGU	chrX:153609091-153609367(+)$1	276	40	43	8.9999
UGU	chr2:74690051-74690298(-)$1	247	0	3	8.9999
UGU	chr9:35738520-35738788(-)$1	268	23	26	8.9999
UGU	chr1:227165049-227165289(+)$1	240	6	9	8.9999
UGU	chr19:2271654-2271897(+)$1	243	80	83	8.9999
UGU	chr17:76120905-76121142(-)$1	237	67	70	8.9999
ugu	chr9:117130761-117131033(-)$1	272	11	14	8.9999
UGU	chr17:27075130-27075412(+)$1	282	33	36	8.9999
UGU	chr3:142745868-142746142(+)$1	274	10	13	8.9999
UGU	chr2:170885743-170886033(+)$1	290	2	5	8.9999
UGU	chr11:62651989-62652246(+)$1	257	209	212	8.9999
UGU	chr6:31619461-31619712(-)$1	251	1	4	8.9999
UGU	chr19:15378243-15378519(-)$1	276	0	3	8.9999
UGU	chr17:80579545-80579831(-)$1	286	32	35	8.9999
UGU	chr19:7706785-7707044(+)$1	259	30	33	8.9999
UGU	chr18:33720940-33721244(+)$1	304	36	39	8.9999
UGU	chr19:51302502-51302774(-)$1	272	141	144	8.9999
UGU	chr16:106416-106648(+)$1	232	130	133	8.9999
UGU	chr17:27438474-27438771(-)$1	297	124	127	8.9999
UGU	chr10:79566558-79566808(-)$1	250	98	101	8.9999
UGU	chrX:153660018-153660293(+)$1	275	91	94	8.9999
UGU	chr11:129762641-129762933(-)$1	292	6	9	8.9999
UGU	chr10:74643875-74644167(+)$1	292	97	100	8.9999
UGU	chr5:140048499-140048796(+)$1	297	60	63	8.9999
UGU	chr18:2752319-2752594(+)$1	275	5	8	8.9999
UGU	chr17:435936-436303(-)$1	367	129	132	8.9999
UGU	chr17:43013599-43013848(-)$1	249	110	113	8.9999
UGU	chr16:89758685-89758971(+)$1	286	98	101	8.9999

#otherMatches

#Struct PSSM
:FF	chr9:95014027-95014286(-)$1	259	2	5	8.9999
hhh	chrX:154306758-154307016(+)$1	258	21	24	8.9999
:::	chr17:80426486-80426774(+)$1	288	14	17	8.9999
[dd	chr14:55615071-55615338(-)$1	267	28	31	8.9999
foo	chr5:179956135-179956418(+)$1	283	80	83	8.9999
DDL	chr3:48719860-48720135(-)$1	275	11	14	8.9999
hhh	chr5:141009382-141009660(-)$1	278	152	155	8.9999
:::	chr9:4985791-4986063(+)$1	272	15	18	8.9999
JJJ	chr17:17718150-17718411(-)$1	261	30	33	8.9999
d[b	chr19:42399264-42399536(+)$1	272	50	53	8.9999
DDD	chr22:26922098-26922380(-)$1	282	64	67	8.9999
GGG	chr22:42301325-42301544(+)$1	219	24	27	8.9999
iii	chr12:125398245-125398473(-)$1	228	31	34	8.9999
:::	chr7:77236410-77236700(+)$1	290	6	9	8.9999
DDD	chr11:47858437-47858700(-)$1	263	1	4	8.9999
ppp	chr17:8168065-8168357(+)$1	292	28	31	8.9999
eee	chr16:71958513-71958848(+)$1	335	50	53	8.9999
HHH	chr5:174938960-174939235(+)$1	275	155	158	8.9999
ccq	chr3:9974148-9974404(+)$1	256	76	79	8.9999
mbb	chr16:4391390-4391706(-)$1	316	16	19	8.9999
fpp	chr12:122613972-122614259(+)$1	287	6	9	8.9999
eee	chr22:26866666-26866938(-)$1	272	25	28	8.9999
+ii	chr15:58925420-58925714(-)$1	294	24	27	8.9999
dmm	chr9:130953005-130953289(-)$1	284	30	33	8.9999
cc2	chr3:12626343-12626629(-)$1	286	16	19	8.9999
:::	chr6:31931049-31931300(+)$1	251	9	12	8.9999
ff[	chr17:34852132-34852419(-)$1	287	5	8	8.9999
eee	chr6:43492583-43492860(-)$1	277	124	127	8.9999
:::	chr11:68170794-68171053(+)$1	259	1	4	8.9999
[cc	chr6:31638723-31638963(+)$1	240	21	24	8.9999
[cc	chr16:23504652-23504926(-)$1	274	18	21	8.9999
III	chr16:31201944-31202177(+)$1	233	0	3	8.9999
!dd	chr18:47017867-47018094(-)$1	227	61	64	8.9999
eee	chr1:183933016-183933317(-)$1	301	61	64	8.9999
::h	chr5:78915318-78915573(+)$1	255	11	14	8.9999
ddd	chrX:153583327-153583613(-)$1	286	62	65	8.9999
dd+	chr17:7221382-7221640(-)$1	258	54	57	8.9999
ddd	chr7:23357217-23357477(-)$1	260	70	73	8.9999
:::	chr13:115002129-115002394(+)$1	265	107	110	8.9999
ra]	chrX:135958688-135958932(-)$1	244	79	82	8.9999
a[b	chr12:7024824-7025118(+)$1	294	173	176	8.9999
yyy	chr1:1684393-1684645(-)$1	252	186	189	8.9999
JJJ	chr17:80207339-80207624(-)$1	285	10	13	8.9999
e]d	chr19:46357674-46357937(-)$1	263	89	92	8.9999
hhh	chr2:38527366-38527624(-)$1	258	12	15	8.9999
cc[	chr17:79683624-79683858(+)$1	234	53	56	8.9999
ggg	chr20:61906814-61907059(+)$1	245	24	27	8.9999
ggg	chr17:34863654-34863915(-)$1	261	14	17	8.9999
ccc	chr11:118967885-118968162(-)$1	277	221	224	8.9999
ppp	chr22:20073093-20073311(+)$1	218	29	32	8.9999
ggg	chr22:19841959-19842247(-)$1	288	81	84	8.9999
ee]	chr16:50342430-50342717(+)$1	287	110	113	8.9999
===	chr20:48699327-48699576(-)$1	249	79	82	8.9999
::D	chr19:11030952-11031218(+)$1	266	1	4	8.9999
www	chr9:139729954-139730211(+)$1	257	20	23	8.9999
ccc	chr3:184033026-184033269(+)$1	243	69	72	8.9999
qqq	chr11:62378925-62379203(-)$1	278	51	54	8.9999
fff	chr9:130996139-130996464(+)$1	325	40	43	8.9999
:::	chr12:30872050-30872306(-)$1	256	2	5	8.9999
c[f	chr3:156868066-156868324(-)$1	258	15	18	8.9999
ddd	chr17:26966535-26966808(-)$1	273	56	59	8.9999
]a]	chr19:12800333-12800613(-)$1	280	64	67	8.9999
CDD	chr19:15480800-15481086(-)$1	286	39	42	8.9999
]cc	chr3:47851985-47852282(+)$1	297	86	89	8.9999
:::	chr3:132297598-132297869(-)$1	271	70	73	8.9999
Dee	chr20:44521714-44521968(+)$1	254	134	137	8.9999
bmm	chr19:1388373-1388673(+)$1	300	25	28	8.9999
eee	chr12:112478255-112478545(-)$1	290	93	96	8.9999
CC{	chr16:21973629-21973958(+)$1	329	10	13	8.9999
eee	chrX:153609091-153609367(+)$1	276	40	43	8.9999
:::	chr2:74690051-74690298(-)$1	247	0	3	8.9999
d[e	chr9:35738520-35738788(-)$1	268	23	26	8.9999
{DD	chr1:227165049-227165289(+)$1	240	6	9	8.9999
EEE	chr19:2271654-2271897(+)$1	243	80	83	8.9999
c[b	chr17:76120905-76121142(-)$1	237	67	70	8.9999
DDD	chr9:117130761-117131033(-)$1	272	11	14	8.9999
]a]	chr17:27075130-27075412(+)$1	282	33	36	8.9999
III	chr3:142745868-142746142(+)$1	274	10	13	8.9999
:::	chr2:170885743-170886033(+)$1	290	2	5	8.9999
:::	chr11:62651989-62652246(+)$1	257	209	212	8.9999
BB{	chr6:31619461-31619712(-)$1	251	1	4	8.9999
:::	chr19:15378243-15378519(-)$1	276	0	3	8.9999
hhh	chr17:80579545-80579831(-)$1	286	32	35	8.9999
KBB	chr19:7706785-7707044(+)$1	259	30	33	8.9999
[cc	chr18:33720940-33721244(+)$1	304	36	39	8.9999
EEE	chr19:51302502-51302774(-)$1	272	141	144	8.9999
hhh	chr16:106416-106648(+)$1	232	130	133	8.9999
ee[	chr17:27438474-27438771(-)$1	297	124	127	8.9999
]cc	chr10:79566558-79566808(-)$1	250	98	101	8.9999
III	chrX:153660018-153660293(+)$1	275	91	94	8.9999
III	chr11:129762641-129762933(-)$1	292	6	9	8.9999
ddd	chr10:74643875-74644167(+)$1	292	97	100	8.9999
hhh	chr5:140048499-140048796(+)$1	297	60	63	8.9999
GGG	chr18:2752319-2752594(+)$1	275	5	8	8.9999
EEE	chr17:435936-436303(-)$1	367	129	132	8.9999
]ff	chr17:43013599-43013848(-)$1	249	110	113	8.9999
ooo	chr16:89758685-89758971(+)$1	286	98	101	8.9999

#DB
.((	chr9:95014027-95014286(-)$1	1	2	5	8.9999
(((	chrX:154306758-154307016(+)$1	1	21	24	8.9999
...	chr17:80426486-80426774(+)$1	1	14	17	8.9999
.((	chr14:55615071-55615338(-)$1	1	28	31	8.9999
(..	chr5:179956135-179956418(+)$1	1	80	83	8.9999
((.	chr3:48719860-48720135(-)$1	1	11	14	8.9999
)))	chr5:141009382-141009660(-)$1	1	152	155	8.9999
...	chr9:4985791-4986063(+)$1	1	15	18	8.9999
(((	chr17:17718150-17718411(-)$1	1	30	33	8.9999
(.(	chr19:42399264-42399536(+)$1	1	50	53	8.9999
(((	chr22:26922098-26922380(-)$1	1	64	67	8.9999
(((	chr22:42301325-42301544(+)$1	1	24	27	8.9999
)))	chr12:125398245-125398473(-)$1	1	31	34	8.9999
...	chr7:77236410-77236700(+)$1	1	6	9	8.9999
(((	chr11:47858437-47858700(-)$1	1	1	4	8.9999
...	chr17:8168065-8168357(+)$1	1	28	31	8.9999
)))	chr16:71958513-71958848(+)$1	1	50	53	8.9999
(((	chr5:174938960-174939235(+)$1	1	155	158	8.9999
((.	chr3:9974148-9974404(+)$1	1	76	79	8.9999
.))	chr16:4391390-4391706(-)$1	1	16	19	8.9999
(..	chr12:122613972-122614259(+)$1	1	6	9	8.9999
)))	chr22:26866666-26866938(-)$1	1	25	28	8.9999
.((	chr15:58925420-58925714(-)$1	1	24	27	8.9999
(..	chr9:130953005-130953289(-)$1	1	30	33	8.9999
)).	chr3:12626343-12626629(-)$1	1	16	19	8.9999
...	chr6:31931049-31931300(+)$1	1	9	12	8.9999
((.	chr17:34852132-34852419(-)$1	1	5	8	8.9999
(((	chr6:43492583-43492860(-)$1	1	124	127	8.9999
...	chr11:68170794-68171053(+)$1	1	1	4	8.9999
.((	chr6:31638723-31638963(+)$1	1	21	24	8.9999
.((	chr16:23504652-23504926(-)$1	1	18	21	8.9999
(((	chr16:31201944-31202177(+)$1	1	0	3	8.9999
.((	chr18:47017867-47018094(-)$1	1	61	64	8.9999
(((	chr1:183933016-183933317(-)$1	1	61	64	8.9999
..(	chr5:78915318-78915573(+)$1	1	11	14	8.9999
)))	chrX:153583327-153583613(-)$1	1	62	65	8.9999
((.	chr17:7221382-7221640(-)$1	1	54	57	8.9999
)))	chr7:23357217-23357477(-)$1	1	70	73	8.9999
...	chr13:115002129-115002394(+)$1	1	107	110	8.9999
.).	chrX:135958688-135958932(-)$1	1	79	82	8.9999
(.(	chr12:7024824-7025118(+)$1	1	173	176	8.9999
...	chr1:1684393-1684645(-)$1	1	186	189	8.9999
(((	chr17:80207339-80207624(-)$1	1	10	13	8.9999
).)	chr19:46357674-46357937(-)$1	1	89	92	8.9999
(((	chr2:38527366-38527624(-)$1	1	12	15	8.9999
((.	chr17:79683624-79683858(+)$1	1	53	56	8.9999
)))	chr20:61906814-61907059(+)$1	1	24	27	8.9999
(((	chr17:34863654-34863915(-)$1	1	14	17	8.9999
(((	chr11:118967885-118968162(-)$1	1	221	224	8.9999
...	chr22:20073093-20073311(+)$1	1	29	32	8.9999
(((	chr22:19841959-19842247(-)$1	1	81	84	8.9999
)).	chr16:50342430-50342717(+)$1	1	110	113	8.9999
(((	chr20:48699327-48699576(-)$1	1	79	82	8.9999
..(	chr19:11030952-11031218(+)$1	1	1	4	8.9999
...	chr9:139729954-139730211(+)$1	1	20	23	8.9999
)))	chr3:184033026-184033269(+)$1	1	69	72	8.9999
...	chr11:62378925-62379203(-)$1	1	51	54	8.9999
(((	chr9:130996139-130996464(+)$1	1	40	43	8.9999
...	chr12:30872050-30872306(-)$1	1	2	5	8.9999
(.(	chr3:156868066-156868324(-)$1	1	15	18	8.9999
)))	chr17:26966535-26966808(-)$1	1	56	59	8.9999
.).	chr19:12800333-12800613(-)$1	1	64	67	8.9999
(((	chr19:15480800-15481086(-)$1	1	39	42	8.9999
.))	chr3:47851985-47852282(+)$1	1	86	89	8.9999
...	chr3:132297598-132297869(-)$1	1	70	73	8.9999
)((	chr20:44521714-44521968(+)$1	1	134	137	8.9999
(..	chr19:1388373-1388673(+)$1	1	25	28	8.9999
(((	chr12:112478255-112478545(-)$1	1	93	96	8.9999
((.	chr16:21973629-21973958(+)$1	1	10	13	8.9999
)))	chrX:153609091-153609367(+)$1	1	40	43	8.9999
...	chr2:74690051-74690298(-)$1	1	0	3	8.9999
(.(	chr9:35738520-35738788(-)$1	1	23	26	8.9999
.((	chr1:227165049-227165289(+)$1	1	6	9	8.9999
(((	chr19:2271654-2271897(+)$1	1	80	83	8.9999
(.(	chr17:76120905-76121142(-)$1	1	67	70	8.9999
(((	chr9:117130761-117131033(-)$1	1	11	14	8.9999
.).	chr17:27075130-27075412(+)$1	1	33	36	8.9999
(((	chr3:142745868-142746142(+)$1	1	10	13	8.9999
...	chr2:170885743-170886033(+)$1	1	2	5	8.9999
...	chr11:62651989-62652246(+)$1	1	209	212	8.9999
((.	chr6:31619461-31619712(-)$1	1	1	4	8.9999
...	chr19:15378243-15378519(-)$1	1	0	3	8.9999
(((	chr17:80579545-80579831(-)$1	1	32	35	8.9999
.((	chr19:7706785-7707044(+)$1	1	30	33	8.9999
.((	chr18:33720940-33721244(+)$1	1	36	39	8.9999
)))	chr19:51302502-51302774(-)$1	1	141	144	8.9999
(((	chr16:106416-106648(+)$1	1	130	133	8.9999
((.	chr17:27438474-27438771(-)$1	1	124	127	8.9999
.))	chr10:79566558-79566808(-)$1	1	98	101	8.9999
(((	chrX:153660018-153660293(+)$1	1	91	94	8.9999
(((	chr11:129762641-129762933(-)$1	1	6	9	8.9999
)))	chr10:74643875-74644167(+)$1	1	97	100	8.9999
(((	chr5:140048499-140048796(+)$1	1	60	63	8.9999
(((	chr18:2752319-2752594(+)$1	1	5	8	8.9999
)))	chr17:435936-436303(-)$1	1	129	132	8.9999
.))	chr17:43013599-43013848(-)$1	1	110	113	8.9999
...	chr16:89758685-89758971(+)$1	1	98	101	8.9999

#PSSM
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	
U : 0.94	u : 0.05	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_CDS_m2_run2.nuc.txt

#NT
GCU	chr10:32326062-32326306(-)$1	244	15	18	9.0000
GCU	chr14:38265947-38266292(+)$1	345	134	137	9.0000
GCU	chr3:58106866-58107093(+)$1	227	28	31	9.0000
GCU	chr6:7574859-7575088(+)$1	229	10	13	9.0000
GCU	chr16:28847466-28847740(+)$1	274	45	48	9.0000
GCU	chrX:153577131-153577373(-)$1	242	48	51	9.0000
GCU	chr2:178081359-178081632(+)$1	273	144	147	9.0000
GCU	chr2:232320009-232320275(-)$1	266	62	65	9.0000
GCU	chr7:77166709-77166969(+)$1	260	31	34	9.0000
GCU	chr2:208576454-208576744(+)$1	290	30	33	9.0000
GCU	chr7:5402239-5402489(-)$1	250	76	79	9.0000
GCU	chr16:70601278-70601523(+)$1	245	8	11	9.0000
GCU	chrY:15026437-15026739(+)$1	302	106	109	9.0000
GCU	chr20:37153454-37153708(+)$1	254	61	64	9.0000
GCU	chr2:230693737-230694072(-)$1	335	67	70	9.0000
GCU	chr2:101638026-101638301(-)$1	275	142	145	9.0000
GCU	chr11:62284171-62284488(-)$1	317	56	59	9.0000
GCU	chr11:61079177-61079481(-)$1	304	67	70	9.0000
GCU	chr1:21102933-21103206(-)$1	273	28	31	9.0000
GCU	chr11:72423483-72423761(-)$1	278	38	41	9.0000
GCU	chr16:4721241-4721505(+)$1	264	29	32	9.0000
GCU	chrX:152018831-152019090(+)$1	259	2	5	9.0000
GCU	chr16:11990430-11990691(-)$1	261	231	234	9.0000
GCU	chr17:80397923-80398200(+)$1	277	11	14	9.0000
GCU	chr6:32945798-32946030(+)$1	232	103	106	9.0000
GCU	chr17:38562627-38562834(-)$1	207	184	187	9.0000
GCU	chr11:62294339-62294593(-)$1	254	211	214	9.0000
GCU	chr17:1580759-1580998(-)$1	239	32	35	9.0000
GCU	chr1:249151582-249151903(-)$1	321	98	101	9.0000
GCU	chr16:75270524-75270831(-)$1	307	84	87	9.0000
GCU	chr17:72768099-72768410(-)$1	311	0	3	9.0000
GCU	chr14:102471402-102471637(+)$1	235	80	83	9.0000
GCU	chr14:21484914-21485174(-)$1	260	13	16	9.0000
GCU	chr14:21963401-21963758(+)$1	357	154	157	9.0000
GCU	chr20:17600841-17601059(-)$1	218	8	11	9.0000
GCU	chr19:8528361-8528680(+)$1	319	6	9	9.0000
GCU	chr3:49050980-49051207(+)$1	227	0	3	9.0000
GCU	chr7:138145180-138145445(+)$1	265	78	81	9.0000
GCU	chr16:3117320-3117594(+)$1	274	80	83	9.0000
GCU	chr3:50140484-50140719(+)$1	235	102	105	9.0000
GCU	chr4:83347667-83347884(-)$1	217	194	197	9.0000
GCU	chr14:23528320-23528582(-)$1	262	21	24	9.0000
GCU	chr3:184041060-184041305(+)$1	245	88	91	9.0000
GCU	chr2:232325152-232325375(-)$1	223	61	64	9.0000
GCU	chr2:207634698-207634970(+)$1	272	51	54	9.0000
GCU	chr12:6700983-6701234(-)$1	251	86	89	9.0000
GCU	chr6:33179068-33179348(+)$1	280	5	8	9.0000
GCU	chr12:121416414-121416660(+)$1	246	13	16	9.0000
GCU	chr10:104113251-104113521(+)$1	270	11	14	9.0000
GCU	chr6:86324699-86324961(-)$1	262	98	101	9.0000
GCU	chr12:123997760-123998017(-)$1	257	12	15	9.0000
GCU	chr4:83348241-83348477(-)$1	236	92	95	9.0000
GCU	chr1:46035407-46035687(+)$1	280	51	54	9.0000
GCU	chr3:50137399-50137681(+)$1	282	65	68	9.0000
GCU	chr5:147778546-147778806(+)$1	260	63	66	9.0000
GCU	chr2:232319817-232320081(-)$1	264	7	10	9.0000
GCU	chr1:247050401-247050695(-)$1	294	24	27	9.0000
GCU	chr2:232326583-232326830(-)$1	247	65	68	9.0000
GCU	chr7:882880-883147(+)$1	267	108	111	9.0000
GCU	chrM:14201-14443(-)$1	242	77	80	9.0000
GCU	chr11:62293136-62293424(-)$1	288	252	255	9.0000
GCU	chr3:58123952-58124189(+)$1	237	98	101	9.0000
gcu	chr1:171526889-171527163(+)$1	274	17	20	9.0000
GCU	chr16:18849518-18849808(-)$1	290	114	117	9.0000
GCU	chr16:279078-279345(-)$1	267	1	4	9.0000
GCU	chr2:230695342-230695697(-)$1	355	4	7	9.0000
GCU	chr1:39888342-39888594(+)$1	252	79	82	9.0000
GCU	chr6:170892649-170892910(-)$1	261	30	33	9.0000
GCU	chr15:85191612-85191886(-)$1	274	0	3	9.0000
GCU	chr5:111071014-111071297(-)$1	283	14	17	9.0000
GCU	chrX:53596563-53596821(-)$1	258	45	48	9.0000
GCU	chr19:8550387-8550687(+)$1	300	21	24	9.0000
GCU	chr8:48761936-48762162(-)$1	226	8	11	9.0000
GCU	chr6:136597300-136597534(-)$1	234	9	12	9.0000
GCU	chr11:62286607-62286891(-)$1	284	14	17	9.0000
GCU	chr11:62290705-62290942(-)$1	237	12	15	9.0000
GCU	chr11:62295322-62295566(-)$1	244	154	157	9.0000
gcu	chr2:86709687-86709939(+)$1	252	20	23	9.0000
GCU	chr19:798426-798682(+)$1	256	146	149	9.0000
GCU	chr6:31785233-31785539(+)$1	306	9	12	9.0000
GCU	chr20:2819571-2819830(-)$1	259	2	5	9.0000
GCU	chr1:31465081-31465346(-)$1	265	213	216	9.0000
GCU	chr14:32546485-32546788(+)$1	303	8	11	9.0000
GCU	chr3:184045276-184045524(+)$1	248	12	15	9.0000
GCU	chr11:62300367-62300629(-)$1	262	163	166	9.0000
GCU	chr6:33179168-33179451(+)$1	283	39	42	9.0000
GCU	chr1:114952699-114952972(-)$1	273	43	46	9.0000
GCU	chr2:61192081-61192346(-)$1	265	109	112	9.0000
GCU	chr1:28176899-28177192(+)$1	293	16	19	9.0000
GCU	chr11:2972896-2973152(-)$1	256	9	12	9.0000
GCU	chr2:64796198-64796501(+)$1	303	6	9	9.0000
GCU	chr2:232325096-232325352(-)$1	256	38	41	9.0000
GCU	chr6:31937062-31937312(+)$1	250	12	15	9.0000
GCU	chr9:94118123-94118392(-)$1	269	47	50	9.0000
GCU	chr3:185637074-185637362(-)$1	288	109	112	9.0000
GCU	chr3:48457752-48458036(-)$1	284	109	112	9.0000
GCU	chr14:21679368-21679627(-)$1	259	6	9	9.0000
GCU	chr17:74717887-74718155(-)$1	268	37	40	9.0000
GCU	chr17:74732098-74732358(-)$1	260	228	231	9.0000

#otherMatches

#Struct PSSM
nnn	chr2:54872410-54872652(+)$1	242	95	98	9.0000
GGG	chr10:32326062-32326306(-)$1	244	15	18	9.0000
ddd	chr14:38265947-38266292(+)$1	345	134	137	9.0000
ppd	chr3:58106866-58107093(+)$1	227	28	31	9.0000
ee&	chr6:7574859-7575088(+)$1	229	10	13	9.0000
[cc	chr16:28847466-28847740(+)$1	274	45	48	9.0000
ooo	chrX:153577131-153577373(-)$1	242	48	51	9.0000
fff	chr2:178081359-178081632(+)$1	273	144	147	9.0000
:dd	chr2:232320009-232320275(-)$1	266	62	65	9.0000
LFF	chr7:77166709-77166969(+)$1	260	31	34	9.0000
hhh	chr2:208576454-208576744(+)$1	290	30	33	9.0000
b[d	chr7:5402239-5402489(-)$1	250	76	79	9.0000
gg[	chr16:70601278-70601523(+)$1	245	8	11	9.0000
fff	chrY:15026437-15026739(+)$1	302	106	109	9.0000
KKB	chr20:37153454-37153708(+)$1	254	61	64	9.0000
hhl	chr2:230693737-230694072(-)$1	335	67	70	9.0000
eee	chr2:101638026-101638301(-)$1	275	142	145	9.0000
JJJ	chr11:62284171-62284488(-)$1	317	56	59	9.0000
ggg	chr11:61079177-61079481(-)$1	304	67	70	9.0000
eee	chr1:21102933-21103206(-)$1	273	28	31	9.0000
DDK	chr11:72423483-72423761(-)$1	278	38	41	9.0000
qqq	chr16:4721241-4721505(+)$1	264	29	32	9.0000
ggg	chrX:152018831-152019090(+)$1	259	2	5	9.0000
ee]	chr16:11990430-11990691(-)$1	261	231	234	9.0000
===	chr17:80397923-80398200(+)$1	277	11	14	9.0000
DDD	chr6:32945798-32946030(+)$1	232	103	106	9.0000
eee	chr17:38562627-38562834(-)$1	207	184	187	9.0000
BBY	chr11:62294339-62294593(-)$1	254	211	214	9.0000
:::	chr17:1580759-1580998(-)$1	239	32	35	9.0000
ccc	chr1:249151582-249151903(-)$1	321	98	101	9.0000
ccc	chr16:75270524-75270831(-)$1	307	84	87	9.0000
JJJ	chr17:72768099-72768410(-)$1	311	0	3	9.0000
ddC	chr14:102471402-102471637(+)$1	235	80	83	9.0000
GGG	chr14:21484914-21485174(-)$1	260	13	16	9.0000
eee	chr14:21963401-21963758(+)$1	357	154	157	9.0000
eee	chr20:17600841-17601059(-)$1	218	8	11	9.0000
E:D	chr19:8528361-8528680(+)$1	319	6	9	9.0000
:::	chr3:49050980-49051207(+)$1	227	0	3	9.0000
]a:	chr7:138145180-138145445(+)$1	265	78	81	9.0000
eee	chr16:3117320-3117594(+)$1	274	80	83	9.0000
fff	chr3:50140484-50140719(+)$1	235	102	105	9.0000
eee	chr4:83347667-83347884(-)$1	217	194	197	9.0000
EEE	chr14:23528320-23528582(-)$1	262	21	24	9.0000
daa	chr3:184041060-184041305(+)$1	245	88	91	9.0000
EEE	chr2:232325152-232325375(-)$1	223	61	64	9.0000
cc]	chr2:207634698-207634970(+)$1	272	51	54	9.0000
ddn	chr12:6700983-6701234(-)$1	251	86	89	9.0000
hhh	chr6:33179068-33179348(+)$1	280	5	8	9.0000
DDD	chr12:121416414-121416660(+)$1	246	13	16	9.0000
ggg	chr10:104113251-104113521(+)$1	270	11	14	9.0000
EE:	chr6:86324699-86324961(-)$1	262	98	101	9.0000
cc[	chr12:123997760-123998017(-)$1	257	12	15	9.0000
eee	chr4:83348241-83348477(-)$1	236	92	95	9.0000
ddd	chr1:46035407-46035687(+)$1	280	51	54	9.0000
e!!	chr3:50137399-50137681(+)$1	282	65	68	9.0000
ttt	chr5:147778546-147778806(+)$1	260	63	66	9.0000
:hh	chr2:232319817-232320081(-)$1	264	7	10	9.0000
bb#	chr1:247050401-247050695(-)$1	294	24	27	9.0000
FFF	chr2:232326583-232326830(-)$1	247	65	68	9.0000
:DD	chr7:882880-883147(+)$1	267	108	111	9.0000
ddd	chrM:14201-14443(-)$1	242	77	80	9.0000
ddd	chr11:62293136-62293424(-)$1	288	252	255	9.0000
cc#	chr3:58123952-58124189(+)$1	237	98	101	9.0000
ddd	chr1:171526889-171527163(+)$1	274	17	20	9.0000
ddd	chr16:18849518-18849808(-)$1	290	114	117	9.0000
ddd	chr16:279078-279345(-)$1	267	1	4	9.0000
:::	chr2:230695342-230695697(-)$1	355	4	7	9.0000
ddd	chr1:39888342-39888594(+)$1	252	79	82	9.0000
bbi	chr6:170892649-170892910(-)$1	261	30	33	9.0000
::E	chr15:85191612-85191886(-)$1	274	0	3	9.0000
FFF	chr5:111071014-111071297(-)$1	283	14	17	9.0000
[bb	chrX:53596563-53596821(-)$1	258	45	48	9.0000
CCC	chr19:8550387-8550687(+)$1	300	21	24	9.0000
DD{	chr8:48761936-48762162(-)$1	226	8	11	9.0000
NEE	chr6:136597300-136597534(-)$1	234	9	12	9.0000
eee	chr11:62286607-62286891(-)$1	284	14	17	9.0000
qcc	chr11:62290705-62290942(-)$1	237	12	15	9.0000
ggg	chr11:62295322-62295566(-)$1	244	154	157	9.0000
ff]	chr2:86709687-86709939(+)$1	252	20	23	9.0000
acc	chr19:798426-798682(+)$1	256	146	149	9.0000
f[c	chr6:31785233-31785539(+)$1	306	9	12	9.0000
FFF	chr20:2819571-2819830(-)$1	259	2	5	9.0000
eee	chr1:31465081-31465346(-)$1	265	213	216	9.0000
{GG	chr14:32546485-32546788(+)$1	303	8	11	9.0000
mmm	chr3:184045276-184045524(+)$1	248	12	15	9.0000
mbb	chr11:62300367-62300629(-)$1	262	163	166	9.0000
fff	chr6:33179168-33179451(+)$1	283	39	42	9.0000
{FF	chr1:114952699-114952972(-)$1	273	43	46	9.0000
E{C	chr2:61192081-61192346(-)$1	265	109	112	9.0000
III	chr1:28176899-28177192(+)$1	293	16	19	9.0000
ccc	chr11:2972896-2973152(-)$1	256	9	12	9.0000
FFF	chr2:64796198-64796501(+)$1	303	6	9	9.0000
cc]	chr2:232325096-232325352(-)$1	256	38	41	9.0000
ggg	chr6:31937062-31937312(+)$1	250	12	15	9.0000
E{C	chr9:94118123-94118392(-)$1	269	47	50	9.0000
bb]	chr3:185637074-185637362(-)$1	288	109	112	9.0000
e[h	chr3:48457752-48458036(-)$1	284	109	112	9.0000
DDD	chr14:21679368-21679627(-)$1	259	6	9	9.0000
B{H	chr17:74717887-74718155(-)$1	268	37	40	9.0000
ccc	chr17:74732098-74732358(-)$1	260	228	231	9.0000

#DB
...	chr2:54872410-54872652(+)$1	1	95	98	9.0000
(((	chr10:32326062-32326306(-)$1	1	15	18	9.0000
(((	chr14:38265947-38266292(+)$1	1	134	137	9.0000
..)	chr3:58106866-58107093(+)$1	1	28	31	9.0000
((.	chr6:7574859-7575088(+)$1	1	10	13	9.0000
.((	chr16:28847466-28847740(+)$1	1	45	48	9.0000
...	chrX:153577131-153577373(-)$1	1	48	51	9.0000
(((	chr2:178081359-178081632(+)$1	1	144	147	9.0000
.((	chr2:232320009-232320275(-)$1	1	62	65	9.0000
.((	chr7:77166709-77166969(+)$1	1	31	34	9.0000
)))	chr2:208576454-208576744(+)$1	1	30	33	9.0000
(.(	chr7:5402239-5402489(-)$1	1	76	79	9.0000
((.	chr16:70601278-70601523(+)$1	1	8	11	9.0000
(((	chrY:15026437-15026739(+)$1	1	106	109	9.0000
..(	chr20:37153454-37153708(+)$1	1	61	64	9.0000
((.	chr2:230693737-230694072(-)$1	1	67	70	9.0000
(((	chr2:101638026-101638301(-)$1	1	142	145	9.0000
(((	chr11:62284171-62284488(-)$1	1	56	59	9.0000
)))	chr11:61079177-61079481(-)$1	1	67	70	9.0000
(((	chr1:21102933-21103206(-)$1	1	28	31	9.0000
((.	chr11:72423483-72423761(-)$1	1	38	41	9.0000
...	chr16:4721241-4721505(+)$1	1	29	32	9.0000
(((	chrX:152018831-152019090(+)$1	1	2	5	9.0000
)).	chr16:11990430-11990691(-)$1	1	231	234	9.0000
(((	chr17:80397923-80398200(+)$1	1	11	14	9.0000
(((	chr6:32945798-32946030(+)$1	1	103	106	9.0000
)))	chr17:38562627-38562834(-)$1	1	184	187	9.0000
)).	chr11:62294339-62294593(-)$1	1	211	214	9.0000
...	chr17:1580759-1580998(-)$1	1	32	35	9.0000
(((	chr1:249151582-249151903(-)$1	1	98	101	9.0000
)))	chr16:75270524-75270831(-)$1	1	84	87	9.0000
(((	chr17:72768099-72768410(-)$1	1	0	3	9.0000
))(	chr14:102471402-102471637(+)$1	1	80	83	9.0000
(((	chr14:21484914-21485174(-)$1	1	13	16	9.0000
(((	chr14:21963401-21963758(+)$1	1	154	157	9.0000
(((	chr20:17600841-17601059(-)$1	1	8	11	9.0000
(.(	chr19:8528361-8528680(+)$1	1	6	9	9.0000
...	chr3:49050980-49051207(+)$1	1	0	3	9.0000
.).	chr7:138145180-138145445(+)$1	1	78	81	9.0000
(((	chr16:3117320-3117594(+)$1	1	80	83	9.0000
(((	chr3:50140484-50140719(+)$1	1	102	105	9.0000
)))	chr4:83347667-83347884(-)$1	1	194	197	9.0000
(((	chr14:23528320-23528582(-)$1	1	21	24	9.0000
)))	chr3:184041060-184041305(+)$1	1	88	91	9.0000
(((	chr2:232325152-232325375(-)$1	1	61	64	9.0000
)).	chr2:207634698-207634970(+)$1	1	51	54	9.0000
((.	chr12:6700983-6701234(-)$1	1	86	89	9.0000
(((	chr6:33179068-33179348(+)$1	1	5	8	9.0000
(((	chr12:121416414-121416660(+)$1	1	13	16	9.0000
(((	chr10:104113251-104113521(+)$1	1	11	14	9.0000
((.	chr6:86324699-86324961(-)$1	1	98	101	9.0000
((.	chr12:123997760-123998017(-)$1	1	12	15	9.0000
)))	chr4:83348241-83348477(-)$1	1	92	95	9.0000
)))	chr1:46035407-46035687(+)$1	1	51	54	9.0000
(..	chr3:50137399-50137681(+)$1	1	65	68	9.0000
...	chr5:147778546-147778806(+)$1	1	63	66	9.0000
.((	chr2:232319817-232320081(-)$1	1	7	10	9.0000
((.	chr1:247050401-247050695(-)$1	1	24	27	9.0000
(((	chr2:232326583-232326830(-)$1	1	65	68	9.0000
.))	chr7:882880-883147(+)$1	1	108	111	9.0000
(((	chrM:14201-14443(-)$1	1	77	80	9.0000
(((	chr11:62293136-62293424(-)$1	1	252	255	9.0000
((.	chr3:58123952-58124189(+)$1	1	98	101	9.0000
(((	chr1:171526889-171527163(+)$1	1	17	20	9.0000
(((	chr16:18849518-18849808(-)$1	1	114	117	9.0000
(((	chr16:279078-279345(-)$1	1	1	4	9.0000
...	chr2:230695342-230695697(-)$1	1	4	7	9.0000
(((	chr1:39888342-39888594(+)$1	1	79	82	9.0000
)))	chr6:170892649-170892910(-)$1	1	30	33	9.0000
..(	chr15:85191612-85191886(-)$1	1	0	3	9.0000
(((	chr5:111071014-111071297(-)$1	1	14	17	9.0000
.((	chrX:53596563-53596821(-)$1	1	45	48	9.0000
(((	chr19:8550387-8550687(+)$1	1	21	24	9.0000
((.	chr8:48761936-48762162(-)$1	1	8	11	9.0000
.((	chr6:136597300-136597534(-)$1	1	9	12	9.0000
(((	chr11:62286607-62286891(-)$1	1	14	17	9.0000
.))	chr11:62290705-62290942(-)$1	1	12	15	9.0000
(((	chr11:62295322-62295566(-)$1	1	154	157	9.0000
)).	chr2:86709687-86709939(+)$1	1	20	23	9.0000
)))	chr19:798426-798682(+)$1	1	146	149	9.0000
(.(	chr6:31785233-31785539(+)$1	1	9	12	9.0000
(((	chr20:2819571-2819830(-)$1	1	2	5	9.0000
(((	chr1:31465081-31465346(-)$1	1	213	216	9.0000
.((	chr14:32546485-32546788(+)$1	1	8	11	9.0000
...	chr3:184045276-184045524(+)$1	1	12	15	9.0000
.))	chr11:62300367-62300629(-)$1	1	163	166	9.0000
(((	chr6:33179168-33179451(+)$1	1	39	42	9.0000
.((	chr1:114952699-114952972(-)$1	1	43	46	9.0000
(.(	chr2:61192081-61192346(-)$1	1	109	112	9.0000
(((	chr1:28176899-28177192(+)$1	1	16	19	9.0000
(((	chr11:2972896-2973152(-)$1	1	9	12	9.0000
(((	chr2:64796198-64796501(+)$1	1	6	9	9.0000
)).	chr2:232325096-232325352(-)$1	1	38	41	9.0000
(((	chr6:31937062-31937312(+)$1	1	12	15	9.0000
(.(	chr9:94118123-94118392(-)$1	1	47	50	9.0000
)).	chr3:185637074-185637362(-)$1	1	109	112	9.0000
(.(	chr3:48457752-48458036(-)$1	1	109	112	9.0000
(((	chr14:21679368-21679627(-)$1	1	6	9	9.0000
(.(	chr17:74717887-74718155(-)$1	1	37	40	9.0000
(((	chr17:74732098-74732358(-)$1	1	228	231	9.0000

#PSSM
G : 0.98	g : 0.02	
C : 0.98	c : 0.02	
U : 0.98	u : 0.02	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_CDS_m2_run1.nuc.txt

#NT
gcugcugcugcucuugcugcugcuucuguuugugcugcuucuccugcugcugcuccugcuucuucugguucugcuucugcgucugcuucuucugcugcuccuucugcugcucuugcuucuucuucggcuucugcugcugcuguuucuguuuccucugcugcugcugcugcuugugcugcugcugcucuagcuucugcuucugcuucugcugcuucugcugcuccuucugcugcuuuugcuuc	chr2:70129463-70129714(+)$1	251	6	248	521.0000

#otherMatches

#Struct PSSM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::DDDDKKBB{BB{BB{BB{AKKBB{BB{BB::::::::::bb[bbpppppppbb]bb:bbmmmmbb::::::::::::cccmmmmccc:::bbpppppppbb:bbpppppppbb:bbmmmmbb:::::::::cccmmmmcccbb[bbyyyyyyyyyyyyyyyybb]bb:BB}BB	chr2:70129341-70129663(+)$1	322	53	295	521.0000
BB{BB{BB{BB{AKKBB{BB{BB::::::::::bb[bbpppppppbb]bb:bbmmmmbb::::::::::::cccmmmmccc:::bbpppppppbb:bbpppppppbb:bbmmmmbb:::::::::cccmmmmcccbb[bbyyyyyyyyyyyyyyyybb]bb:BB}BB}BBYYA}BB}BB}BB}BBYYDDDD::::bbmmmmbb:::::::bb####bb[bbpppppppbb]bb4444bb:::	chr2:70129463-70129714(+)$1	251	6	248	521.0000

#DB
.....................................................................((((..((.((.((.((.(..((.((.((..........((.((.......)).)).((....))............(((....)))...((.......)).((.......)).((....)).........(((....)))((.((................)).)).)).))	chr2:70129341-70129663(+)$1	1	53	295	521.0000
((.((.((.((.(..((.((.((..........((.((.......)).)).((....))............(((....)))...((.......)).((.......)).((....)).........(((....)))((.((................)).)).)).)).))..).)).)).)).))..))))....((....)).......((....((.((.......)).))....))...	chr2:70129463-70129714(+)$1	1	6	248	521.0000

#PSSM
c : 0.50	g : 0.50	
u : 0.50	c : 0.50	
u : 1.00	
c : 0.50	g : 0.50	
u : 0.50	c : 0.50	
c : 0.50	u : 0.50	
c : 0.50	g : 0.50	
u : 0.50	c : 0.50	
u : 1.00	
c : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
c : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
c : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
c : 0.50	u : 0.50	
u : 0.50	g : 0.50	
u : 1.00	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
u : 0.50	g : 0.50	
c : 0.50	u : 0.50	
c : 0.50	g : 0.50	
u : 0.50	c : 0.50	
c : 0.50	u : 0.50	
c : 0.50	g : 0.50	
u : 0.50	c : 0.50	
u : 1.00	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
u : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
c : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
c : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
U : 0.50	u : 0.50	
A : 0.50	u : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
U : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	u : 0.50	
g : 0.50	u : 0.50	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
u : 1.00	
g : 0.50	u : 0.50	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 0.50	c : 0.50	
c : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	c : 0.50	
u : 1.00	
u : 0.50	g : 0.50	
g : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
u : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
c : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
c : 1.00	
u : 0.50	g : 0.50	
g : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
g : 1.00	
g : 0.50	u : 0.50	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
u : 1.00	
c : 1.00	
u : 0.50	c : 0.50	
g : 0.50	u : 0.50	
c : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
c : 0.50	g : 0.50	
u : 1.00	
c : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 0.50	a : 0.50	
g : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
g : 0.50	u : 0.50	
g : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
c : 1.00	
u : 1.00	
g : 1.00	
u : 0.50	c : 0.50	
u : 1.00	
u : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
u : 0.50	c : 0.50	
u : 1.00	
u : 1.00	
c : 1.00	
c : 0.50	u : 0.50	
u : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
c : 1.00	

#score	1042.0
#seq	2
#width	242
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_transcript_m1_run2.nuc.txt

#NT
GGGGUGGGA	chr19:13110613-13110890(+)$1	277	118	127	19.4264
GGGUUGGGG	chr11:706734-707069(+)$1	335	83	92	19.0588
GGGGUGGGA	chr11:68833343-68833640(+)$1	297	140	149	19.4264
GGGGUGGGG	chr8:103423794-103424092(-)$1	298	277	286	23.4705
GGGGAGGGG	chr16:88579425-88579709(+)$1	284	95	104	20.2352
GGCGUGGGG	chr19:1168707-1168997(-)$1	290	117	126	18.7647
GGGGUGGGG	chr7:47577385-47577647(-)$1	262	70	79	23.4705
GAGGUGGGG	chr19:40330989-40331250(-)$1	261	30	39	19.7205
GGGGUGGGG	chr17:75428093-75428316(+)$1	223	29	38	23.4705
GGGGUGGCG	chr16:4663815-4664048(-)$1	233	28	37	18.8382
ggggagggg	chr22:51136080-51136402(+)$1	322	103	112	20.2352
ggggugggg	chr18:30350574-30350865(+)$1	291	33	42	23.4705
GGGGAGGGG	chr11:63834777-63835089(-)$1	312	79	88	20.2352
GAGGUGGGG	chr1:44871810-44872075(+)$1	265	99	108	19.7205
ggggcgggg	chr8:144815672-144815915(-)$1	243	82	91	19.7941
GCGGUGGGG	chr17:29058737-29059000(+)$1	263	185	194	19.4999
GGGGCGGGG	chr19:42758912-42759169(-)$1	257	43	52	19.7941
GGGGUGGGU	chr4:1803903-1804227(+)$1	324	114	123	19.2794
GGCGUGGGG	chr11:853880-854121(+)$1	241	95	104	18.7647
AGGGUGGGG	chr7:2680970-2681231(+)$1	261	97	106	18.9117
GGGGUGGGG	chr20:60938793-60939069(-)$1	276	228	237	23.4705
GGGGAGGGG	chr21:46828564-46828810(+)$1	246	93	102	20.2352
GUGGUGGGG	chr4:8475738-8475999(+)$1	261	60	69	19.4264
GGGGUGGGG	chr19:17347088-17347355(-)$1	267	48	57	23.4705
GGGGUGGUG	chr19:3359643-3360002(+)$1	359	83	92	18.7647
GGGGUGGGG	chr16:89266492-89266759(-)$1	267	145	154	23.4705
GGGGUGGGA	chr22:29446704-29446964(+)$1	260	28	37	19.4264
GGGGUGGCG	chr9:137263481-137263792(+)$1	311	62	71	18.8382
UGGGUGGGG	chr17:53354533-53354819(+)$1	286	143	152	18.9117
GGGGUGGGA	chr7:1571233-1571527(+)$1	294	123	132	19.4264
GGGGUGGGA	chr17:21192647-21192947(+)$1	300	3	12	19.4264
gggcugggg	chr22:50912869-50913136(-)$1	267	8	17	19.2058
GCGGUGGGG	chr9:138372028-138372270(+)$1	242	104	113	19.4999
ggggagggg	chr15:90410057-90410321(-)$1	264	64	73	20.2352
ggggugggg	chr7:752076-752351(-)$1	275	76	85	23.4705
GGGGUGGGG	chr9:136772817-136773073(-)$1	256	89	98	23.4705
GGGGAGGGG	chr2:178077717-178077970(+)$1	253	10	19	20.2352
GGGUUGGGG	chr1:15479975-15480260(+)$1	285	27	36	19.0588
GUGGUGGGG	chr19:18631829-18632108(-)$1	279	261	270	19.4264
GGGGUGGGU	chr9:138951548-138951818(-)$1	270	62	71	19.2794
GGGGAGGGG	chr9:138372381-138372644(+)$1	263	32	41	20.2352
GGGGUGGGG	chr19:7661146-7661405(+)$1	259	108	117	23.4705
GAGGUGGGG	chr1:16470316-16470639(-)$1	323	106	115	19.7205
GGGGUGGGG	chr7:1170007-1170296(-)$1	289	119	128	23.4705
GGGGUGGGG	chr9:95526284-95526537(-)$1	253	93	102	23.4705
GCGGUGGGG	chr17:75449226-75449464(+)$1	238	3	12	19.4999
GGGCUGGGG	chr16:75299358-75299609(-)$1	251	106	115	19.2058
GGGGUGGGG	chr17:75404738-75405014(+)$1	276	16	25	23.4705
GGGCUGGGG	chr21:46878728-46879007(+)$1	279	101	110	19.2058
GAGGUGGGG	chr8:21917400-21917705(+)$1	305	94	103	19.7205
GGGGUGGGG	chr2:86252969-86253256(-)$1	287	70	79	23.4705
ggggcgggg	chr1:205600487-205600755(-)$1	268	60	69	19.7941
gaggugggg	chr5:139043351-139043601(+)$1	250	74	83	19.7205
GGGGUGGGG	chr11:70932997-70933266(-)$1	269	82	91	23.4705
GGGGAGGGG	chr20:32254231-32254457(-)$1	226	164	173	20.2352
GGGGAGGGG	chr17:75369122-75369343(+)$1	221	31	40	20.2352
GGGCUGGGG	chr2:97535358-97535643(-)$1	285	132	141	19.2058
GGGGUGGGG	chr19:4059844-4060102(-)$1	258	94	103	23.4705
GGGGUGGGG	chr17:76124234-76124462(-)$1	228	193	202	23.4705
ggggcgggg	chr20:4667811-4668091(+)$1	280	75	84	19.7941
UGGGUGGGG	chr14:69444349-69444596(-)$1	247	65	74	18.9117
GGGGUGGGG	chr11:63853736-63854007(-)$1	271	114	123	23.4705
AGGGUGGGG	chr1:245026573-245026834(-)$1	261	34	43	18.9117
GGGGUGGGU	chr9:127268840-127269162(-)$1	322	161	170	19.2794
GGGGUGGGG	chr14:99990194-99990451(-)$1	257	83	92	23.4705
GGGGAGGGG	chr14:69618227-69618469(-)$1	242	145	154	20.2352
GGGGUGGGG	chr4:904130-904380(-)$1	250	33	42	23.4705

#otherMatches

#Struct PSSM
FFFddddmm	chr12:66219343-66219569(+)$1	226	15	24	19.7205
eeeuuuuuu	chr19:13110613-13110890(+)$1	277	118	127	19.4264
"ggggggg[	chr11:706734-707069(+)$1	335	83	92	19.0588
ggggg[bbc	chr11:68833343-68833640(+)$1	297	140	149	19.4264
FFFFF}CCC	chr8:103423794-103424092(-)$1	298	277	286	23.4705
GGGGGGeee	chr16:88579425-88579709(+)$1	284	95	104	20.2352
EEE}CCCcc	chr19:1168707-1168997(-)$1	290	117	126	18.7647
$$$======	chr7:47577385-47577647(-)$1	262	70	79	23.4705
dddd[dddd	chr19:40330989-40331250(-)$1	261	30	39	19.7205
JJ:iiiiii	chr17:75428093-75428316(+)$1	223	29	38	23.4705
ddccc[eee	chr16:4663815-4664048(-)$1	233	28	37	18.8382
GGGGGGGbb	chr22:51136080-51136402(+)$1	322	103	112	20.2352
dd22ggggg	chr18:30350574-30350865(+)$1	291	33	42	23.4705
fdddd[ccc	chr11:63834777-63835089(-)$1	312	79	88	20.2352
ddeeeee[b	chr1:44871810-44872075(+)$1	265	99	108	19.7205
ccc]eeeee	chr8:144815672-144815915(-)$1	243	82	91	19.7941
eeeeeJJJJ	chr17:29058737-29059000(+)$1	263	185	194	19.4999
dddd::iii	chr19:42758912-42759169(-)$1	257	43	52	19.7941
JJJJJJJJJ	chr4:1803903-1804227(+)$1	324	114	123	19.2794
ddd]a]a]i	chr11:853880-854121(+)$1	241	95	104	18.7647
]ddddffff	chr7:2680970-2681231(+)$1	261	97	106	18.9117
ddd[hhhhh	chr20:60938793-60939069(-)$1	276	228	237	23.4705
ddd[cccmm	chr21:46828564-46828810(+)$1	246	93	102	20.2352
dddd[dddd	chr4:8475738-8475999(+)$1	261	60	69	19.4264
JJJJJJJJJ	chr19:17347088-17347355(-)$1	267	48	57	23.4705
dddffffff	chr19:3359643-3360002(+)$1	359	83	92	18.7647
LLLBBKKBB	chr16:89266492-89266759(-)$1	267	145	154	23.4705
KKBB{CCCK	chr22:29446704-29446964(+)$1	260	28	37	19.4264
ggggggnnn	chr9:137263481-137263792(+)$1	311	62	71	18.8382
EEIIIIIII	chr17:53354533-53354819(+)$1	286	143	152	18.9117
JJJJJJJJJ	chr7:1571233-1571527(+)$1	294	123	132	19.4264
EEFFFFFFf	chr17:21192647-21192947(+)$1	300	3	12	19.4264
"""bb[bb[	chr22:50912869-50913136(-)$1	267	8	17	19.2058
ee22hhhhh	chr9:138372028-138372270(+)$1	242	104	113	19.4999
!!hhhhhhh	chr15:90410057-90410321(-)$1	264	64	73	20.2352
ff::::fff	chr7:752076-752351(-)$1	275	76	85	23.4705
c[dddd[ff	chr9:136772817-136773073(-)$1	256	89	98	23.4705
ggggggg!!	chr2:178077717-178077970(+)$1	253	10	19	20.2352
hhhhhhhht	chr1:15479975-15480260(+)$1	285	27	36	19.0588
fffffCCCG	chr19:18631829-18632108(-)$1	279	261	270	19.4264
nnnnnbbii	chr9:138951548-138951818(-)$1	270	62	71	19.2794
ddd!!ccc[	chr9:138372381-138372644(+)$1	263	32	41	20.2352
hhh::HHHH	chr19:7661146-7661405(+)$1	259	108	117	23.4705
""ffffff[	chr1:16470316-16470639(-)$1	323	106	115	19.7205
JJJJJJJJJ	chr7:1170007-1170296(-)$1	289	119	128	23.4705
eeee[dddd	chr9:95526284-95526537(-)$1	253	93	102	23.4705
iiiiiiiin	chr17:75449226-75449464(+)$1	238	3	12	19.4999
BBBB{GGGG	chr16:75299358-75299609(-)$1	251	106	115	19.2058
EEEEE{EEE	chr17:75404738-75405014(+)$1	276	16	25	23.4705
]eeeeefff	chr21:46878728-46879007(+)$1	279	101	110	19.2058
DDDD{DDDD	chr8:21917400-21917705(+)$1	305	94	103	19.7205
ggggg$$$$	chr2:86252969-86253256(-)$1	287	70	79	23.4705
abb]bb]cc	chr1:205600487-205600755(-)$1	268	60	69	19.7941
dddd]ccce	chr5:139043351-139043601(+)$1	250	74	83	19.7205
KIIIIIIII	chr11:70932997-70933266(-)$1	269	82	91	23.4705
ff:::FFFF	chr20:32254231-32254457(-)$1	226	164	173	20.2352
====[bb[a	chr17:75369122-75369343(+)$1	221	31	40	20.2352
dddd]a]cc	chr2:97535358-97535643(-)$1	285	132	141	19.2058
!ddddmmmm	chr19:4059844-4060102(-)$1	258	94	103	23.4705
DDa[ddddc	chr17:76124234-76124462(-)$1	228	193	202	23.4705
g]ccchhhh	chr20:4667811-4668091(+)$1	280	75	84	19.7941
4eeeee===	chr14:69444349-69444596(-)$1	247	65	74	18.9117
:ddddeeee	chr11:63853736-63854007(-)$1	271	114	123	23.4705
xxxxxxxxx	chr1:245026573-245026834(-)$1	261	34	43	18.9117
}JJJJJJJJ	chr9:127268840-127269162(-)$1	322	161	170	19.2794
LDDDDMMMM	chr14:99990194-99990451(-)$1	257	83	92	23.4705
JJJJJJJJJ	chr14:69618227-69618469(-)$1	242	145	154	20.2352
a]a]ccccc	chr4:904130-904380(-)$1	250	33	42	23.4705

#DB
(((((((..	chr12:66219343-66219569(+)$1	1	15	24	19.7205
(((......	chr19:13110613-13110890(+)$1	1	118	127	19.4264
.(((((((.	chr11:706734-707069(+)$1	1	83	92	19.0588
(((((.(((	chr11:68833343-68833640(+)$1	1	140	149	19.4264
))))).)))	chr8:103423794-103424092(-)$1	1	277	286	23.4705
(((((((((	chr16:88579425-88579709(+)$1	1	95	104	20.2352
))).)))((	chr19:1168707-1168997(-)$1	1	117	126	18.7647
...((((((	chr7:47577385-47577647(-)$1	1	70	79	23.4705
((((.((((	chr19:40330989-40331250(-)$1	1	30	39	19.7205
((.((((((	chr17:75428093-75428316(+)$1	1	29	38	23.4705
))(((.(((	chr16:4663815-4664048(-)$1	1	28	37	18.8382
(((((((((	chr22:51136080-51136402(+)$1	1	103	112	20.2352
))..)))))	chr18:30350574-30350865(+)$1	1	33	42	23.4705
)((((.(((	chr11:63834777-63835089(-)$1	1	79	88	20.2352
(((((((.(	chr1:44871810-44872075(+)$1	1	99	108	19.7205
))).)))))	chr8:144815672-144815915(-)$1	1	82	91	19.7941
)))))))))	chr17:29058737-29059000(+)$1	1	185	194	19.4999
))))..(((	chr19:42758912-42759169(-)$1	1	43	52	19.7941
(((((((((	chr4:1803903-1804227(+)$1	1	114	123	19.2794
))).).).)	chr11:853880-854121(+)$1	1	95	104	18.7647
.))))((((	chr7:2680970-2681231(+)$1	1	97	106	18.9117
(((.(((((	chr20:60938793-60939069(-)$1	1	228	237	23.4705
(((.(((..	chr21:46828564-46828810(+)$1	1	93	102	20.2352
((((.((((	chr4:8475738-8475999(+)$1	1	60	69	19.4264
(((((((((	chr19:17347088-17347355(-)$1	1	48	57	23.4705
)))))))))	chr19:3359643-3360002(+)$1	1	83	92	18.7647
...((..((	chr16:89266492-89266759(-)$1	1	145	154	23.4705
..((.(((.	chr22:29446704-29446964(+)$1	1	28	37	19.4264
((((((...	chr9:137263481-137263792(+)$1	1	62	71	18.8382
)))))))))	chr17:53354533-53354819(+)$1	1	143	152	18.9117
)))))))))	chr7:1571233-1571527(+)$1	1	123	132	19.4264
(((((((((	chr17:21192647-21192947(+)$1	1	3	12	19.4264
...((.((.	chr22:50912869-50913136(-)$1	1	8	17	19.2058
))..)))))	chr9:138372028-138372270(+)$1	1	104	113	19.4999
..(((((((	chr15:90410057-90410321(-)$1	1	64	73	20.2352
))....(((	chr7:752076-752351(-)$1	1	76	85	23.4705
(.((((.((	chr9:136772817-136773073(-)$1	1	89	98	23.4705
(((((((..	chr2:178077717-178077970(+)$1	1	10	19	20.2352
((((((((.	chr1:15479975-15480260(+)$1	1	27	36	19.0588
)))))))))	chr19:18631829-18632108(-)$1	1	261	270	19.4264
.....))))	chr9:138951548-138951818(-)$1	1	62	71	19.2794
(((..(((.	chr9:138372381-138372644(+)$1	1	32	41	20.2352
)))..))))	chr19:7661146-7661405(+)$1	1	108	117	23.4705
..((((((.	chr1:16470316-16470639(-)$1	1	106	115	19.7205
(((((((((	chr7:1170007-1170296(-)$1	1	119	128	23.4705
((((.((((	chr9:95526284-95526537(-)$1	1	93	102	23.4705
((((((((.	chr17:75449226-75449464(+)$1	1	3	12	19.4999
((((.((((	chr16:75299358-75299609(-)$1	1	106	115	19.2058
(((((.(((	chr17:75404738-75405014(+)$1	1	16	25	23.4705
.)))))(((	chr21:46878728-46879007(+)$1	1	101	110	19.2058
((((.((((	chr8:21917400-21917705(+)$1	1	94	103	19.7205
(((((....	chr2:86252969-86253256(-)$1	1	70	79	23.4705
))).)).))	chr1:205600487-205600755(-)$1	1	60	69	19.7941
)))).)))(	chr5:139043351-139043601(+)$1	1	74	83	19.7205
.((((((((	chr11:70932997-70933266(-)$1	1	82	91	23.4705
))...))))	chr20:32254231-32254457(-)$1	1	164	173	20.2352
((((.((.(	chr17:75369122-75369343(+)$1	1	31	40	20.2352
)))).).))	chr2:97535358-97535643(-)$1	1	132	141	19.2058
.((((....	chr19:4059844-4060102(-)$1	1	94	103	23.4705
))(.(((((	chr17:76124234-76124462(-)$1	1	193	202	23.4705
).)))((((	chr20:4667811-4668091(+)$1	1	75	84	19.7941
.))))))))	chr14:69444349-69444596(-)$1	1	65	74	18.9117
.((((((((	chr11:63853736-63854007(-)$1	1	114	123	23.4705
.........	chr1:245026573-245026834(-)$1	1	34	43	18.9117
.))))))))	chr9:127268840-127269162(-)$1	1	161	170	19.2794
.((((....	chr14:99990194-99990451(-)$1	1	83	92	23.4705
)))))))))	chr14:69618227-69618469(-)$1	1	145	154	20.2352
).).)))))	chr4:904130-904380(-)$1	1	33	42	23.4705

#PSSM
G : 0.80	g : 0.13	A : 0.02	U : 0.02	
G : 0.72	g : 0.11	A : 0.07	C : 0.04	U : 0.02	a : 0.01	
G : 0.83	g : 0.13	C : 0.02	
G : 0.79	g : 0.11	C : 0.04	U : 0.02	c : 0.01	
U : 0.73	A : 0.11	u : 0.05	c : 0.04	a : 0.02	C : 0.01	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
G : 0.82	g : 0.13	C : 0.02	U : 0.01	
G : 0.74	g : 0.13	A : 0.07	U : 0.04	

#score	1406.1470588235288
#seq	68
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF215XPR_WDR3_transcript_m3_run1.nuc.txt

#NT
AAUGAGAUUGAGGGUGGGGGGGUGCGU	chr11:93454803-93455053(+)$1	250	102	129	32.4999
CAGGUUCCCGAGGCCGAGCGGUGGUGU	chr20:26189944-26190243(-)$1	299	136	163	36.9999
gaaaaccacgaggaagagagguagcgu	chr17:19091288-19091524(+)$1	236	110	137	36.9999
CAGGUCUGUGGGGGGAAGAGUGUGUGU	chr2:97559879-97560185(-)$1	306	102	129	21.4999
gaaaaccacgaggaagagagguagcgu	chr17:19091324-19091534(+)$1	210	74	101	36.9999
gaaaaccacgaggaagagagguagcgu	chr17:19093390-19093598(-)$1	208	110	137	36.9999
CAGGUUCCCGAGGCCGAGCGGUGGUGU	chr20:26190043-26190344(-)$1	301	237	264	36.9999
AAUGAGAUUGAGGGUGGGGGGGUGCGU	chr11:93454853-93455130(+)$1	277	52	79	32.4999
AAUGAGAUUGGGGGUGAGGGGGUGCAU	chrX:20154118-20154391(-)$1	273	81	108	28.4999

#otherMatches

#Struct PSSM
IIIIKKCCCBB{FFFFFF:eeeee[ap	chr20:26189853-26190144(-)$1	291	37	64	36.9999
AKKFFFFFFLLLEEEEEccc[ddddmm	chr11:93454803-93455053(+)$1	250	102	129	32.4999
IIIIKKCCCBB{FFFFFF:eeeee[ap	chr20:26189944-26190243(-)$1	299	136	163	36.9999
::::::dddddddd[eeeeeooooooe	chr17:19091288-19091524(+)$1	236	110	137	36.9999
b:eeeee[a[ccc####ffffff%%%%	chr2:97559879-97560185(-)$1	306	102	129	21.4999
$$$$$bbmmmmbb666666ccc:JJJJ	chr17:19091324-19091534(+)$1	210	74	101	36.9999
::::::dddddddd[eeeeeooooooe	chr17:19093390-19093598(-)$1	208	110	137	36.9999
2bbeeeeeBB}EEEEE}DDDD:dddd[	chr20:26190043-26190344(-)$1	301	237	264	36.9999
UUUJJJJJJJJJJJ{BBccc[ddddmm	chr11:93454853-93455130(+)$1	277	52	79	32.4999
:::::ggggggg$$$$$ccc[ddddmm	chrX:20154118-20154391(-)$1	273	81	108	28.4999

#DB
((((..(((((.((((((.(((((.(.	chr20:26189853-26190144(-)$1	1	37	64	36.9999
(..((((((...((((((((.((((..	chr11:93454803-93455053(+)$1	1	102	129	32.4999
((((..(((((.((((((.(((((.(.	chr20:26189944-26190243(-)$1	1	136	163	36.9999
......((((((((.(((((......)	chr17:19091288-19091524(+)$1	1	110	137	36.9999
).(((((.(.(((....((((((....	chr2:97559879-97560185(-)$1	1	102	129	21.4999
.....((....))......))).((((	chr17:19091324-19091534(+)$1	1	74	101	36.9999
......((((((((.(((((......)	chr17:19093390-19093598(-)$1	1	110	137	36.9999
.))))))))).))))).)))).((((.	chr20:26190043-26190344(-)$1	1	237	264	36.9999
...(((((((((((.(((((.((((..	chr11:93454853-93455130(+)$1	1	52	79	32.4999
.....(((((((.....(((.((((..	chrX:20154118-20154391(-)$1	1	81	108	28.4999

#PSSM
C : 0.40	A : 0.30	g : 0.30	
A : 0.70	a : 0.30	
G : 0.40	U : 0.30	a : 0.30	
G : 0.70	a : 0.30	
U : 0.40	A : 0.30	a : 0.30	
U : 0.30	G : 0.30	c : 0.30	C : 0.10	
C : 0.30	A : 0.30	c : 0.30	U : 0.10	
C : 0.30	U : 0.30	a : 0.30	G : 0.10	
U : 0.40	C : 0.30	c : 0.30	
G : 0.70	g : 0.30	
A : 0.50	a : 0.30	G : 0.20	
G : 0.70	g : 0.30	
G : 0.70	g : 0.30	
G : 0.40	C : 0.30	a : 0.30	
C : 0.30	U : 0.30	a : 0.30	G : 0.10	
G : 0.60	g : 0.30	A : 0.10	
A : 0.50	a : 0.30	G : 0.20	
G : 0.70	g : 0.30	
C : 0.30	G : 0.30	a : 0.30	A : 0.10	
G : 0.70	g : 0.30	
G : 0.60	g : 0.30	U : 0.10	
G : 0.40	U : 0.30	u : 0.30	
U : 0.40	G : 0.30	a : 0.30	
G : 0.70	g : 0.30	
U : 0.40	C : 0.30	c : 0.30	
G : 0.60	g : 0.30	A : 0.10	
U : 0.70	u : 0.30	

#score	336.9999999999998
#seq	10
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_UTR_m3_run1.nuc.txt

#NT
ACCUCGCCCCCACUUGUGCCCCCAGCUCAGCCCCCCUGCACGCAGCCCGACUAGCAGUCUAGAGGCCUGAGGCUUCUGGGUCCUGGUGACGGGGCUGGCAUGACCCCGGGGGUCGUCCAUGCCAGUCCGCCUCAGUCGCAGAGGGUCCCUCGGCAAGCGCCCUGUGAG	chr11:2150881-2151092(-)$1	211	39	207	504.0000
ACCUCGCCCCCACUUGUGCCCCCAGCUCAGCCCCCCUGCACGCAGCCCGACUAGCAGUCUAGAGGCCUGAGGCUUCUGGGUCCUGGUGACGGGGCUGGCAUGACCCCGGGGGUCGUCCAUGCCAGUCCGCCUCAGUCGCAGAGGGUCCCUCGGCAAGCGCCCUGUGAG	chr11:2150849-2151053(-)$1	204	0	168	504.0000
ACCUCGCCCCCACUUGUGCCCCCAGCUCAGCCCCCCUGCACGCAGCCCGACUAGCAGUCUAGAGGCCUGAGGCUUCUGGGUCCUGGUGACGGGGCUGGCAUGACCCCGGGGGUCGUCCAUGCCAGUCCGCCUCAGUCGCAGAGGGUCCCUCGGCAAGCGCCCUGUGAG	chr11:2150858-2151063(-)$1	205	10	178	504.0000

#otherMatches

#Struct PSSM
:::::FFFFFFKKGGGGGGGQQQQQQQQFFFFFFMMMMCCC{CCCCCCddddllldddd:ggggggglllgggggggCCCYYCCCCCCYYFFFFFFGGGGGGG~~~~FFFFFF:eeeee%%%%%%cccccc[bb[ffffff[bbbb[ammmma333bb]bbffffff]	chr11:2150853-2151058(-)$1	205	5	173	504.0000
^^^^^^^^^^^^^^^^^ccceeeee4444ccc]ffffff]hhhhhhhh:eeeee"""==========lll==========22eeeee::::==========eeeeellleeeee4444==========::dddd[ffffff[bbbb[ammmma333bb]bbffffff]	chr11:2150881-2151092(-)$1	211	39	207	504.0000
:::::FFFFFFKKGGGGGGGQQQQQQQQFFFFFFMMMMCCC{CCCCCCddddllldddd:ggggggglllgggggggCCCYYCCCCCCYYFFFFFFGGGGGGG~~~~FFFFFF:eeeee%%%%%%cccccc[bb[ffffff[bbbb[ammmma333bb]bbffffff]	chr11:2150849-2151053(-)$1	204	0	168	504.0000
pppppcccdddd:::::FFFFFFLLLCCCCCC{EEEEECCC{CCCCCCddddllldddd:ggggggglllgggggggCCCYYCCCCCC}EEEEEYYCCC}CCC~~~~FFFFFF:eeeee%%%%%%cccccc[bb[ffffff[bbbb[ammmma333bb]bbffffff]	chr11:2150858-2151063(-)$1	205	10	178	504.0000

#DB
.....((((((..(((((((........((((((....(((.((((((((((...)))).(((((((...))))))))))..))))))..)))))))))))))....)))))).(((((......((((((.((.((((((.((((.(....)...)).)))))))).	chr11:2150853-2151058(-)$1	1	5	173	504.0000
.................))))))))....))).)))))).)))))))).(((((...((((((((((...))))))))))..)))))....(((((((((((((((...)))))....))))))))))..((((.((((((.((((.(....)...)).)))))))).	chr11:2150881-2151092(-)$1	1	39	207	504.0000
.....((((((..(((((((........((((((....(((.((((((((((...)))).(((((((...))))))))))..))))))..)))))))))))))....)))))).(((((......((((((.((.((((((.((((.(....)...)).)))))))).	chr11:2150849-2151053(-)$1	1	0	168	504.0000
.....))))))).....((((((...((((((.((((((((.((((((((((...)))).(((((((...))))))))))..)))))).)))))..))).)))....)))))).(((((......((((((.((.((((((.((((.(....)...)).)))))))).	chr11:2150858-2151063(-)$1	1	10	178	504.0000

#PSSM
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	

#score	2016.0
#seq	4
#width	168
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_CDS_m1_run2.nuc.txt

#NT
CUGGG	chr12:133219790-133220041(-)$1	251	95	100	14.9999
CUGGG	chr7:99688068-99688378(+)$1	310	67	72	14.9999
CUGGG	chr5:175956716-175956969(-)$1	253	29	34	14.9999
CUGGG	chr1:161130277-161130545(+)$1	268	78	83	14.9999
CUGGG	chr1:180147780-180148081(+)$1	301	227	232	14.9999
cuggg	chr16:71956265-71956506(+)$1	241	54	59	14.9999
CUGGG	chr17:79880939-79881234(-)$1	295	16	21	14.9999
CUGGG	chr20:33437762-33438018(-)$1	256	115	120	14.9999
CUGGG	chr7:151932891-151933165(-)$1	274	259	264	14.9999
CUGGG	chr1:35900548-35900842(-)$1	294	86	91	14.9999
CUGGG	chr9:35704047-35704329(-)$1	282	13	18	14.9999
CUGGG	chrX:151124205-151124451(-)$1	246	219	224	14.9999
CUGGG	chr17:79680146-79680417(+)$1	271	264	269	14.9999
CUGGG	chr17:80054216-80054483(-)$1	267	83	88	14.9999
CUGGG	chr11:64535630-64535884(-)$1	254	196	201	14.9999
CUGGG	chr2:54197793-54198038(-)$1	245	109	114	14.9999
CUGGG	chr16:1503784-1504026(-)$1	242	61	66	14.9999
CUGGG	chr5:175955984-175956237(-)$1	253	10	15	14.9999
CUGGG	chr12:56645734-56646023(-)$1	289	245	250	14.9999
CUGGG	chr9:35738496-35738775(-)$1	279	76	81	14.9999
CUGGG	chr17:38191477-38191741(-)$1	264	66	71	14.9999
cuggg	chr19:54677972-54678269(-)$1	297	4	9	14.9999
CUGGG	chr20:60899147-60899479(-)$1	332	83	88	14.9999
CUGGG	chr16:1500532-1500793(-)$1	261	19	24	14.9999
CUGGG	chr14:105935641-105935926(+)$1	285	29	34	14.9999
CUGGG	chr12:54801544-54801836(-)$1	292	238	243	14.9999
CUGGG	chr20:39791661-39791966(+)$1	305	3	8	14.9999
CUGGG	chr19:19758194-19758479(-)$1	285	199	204	14.9999
CUGGG	chr8:144668908-144669165(-)$1	257	78	83	14.9999
CUGGG	chr12:48179140-48179412(-)$1	272	81	86	14.9999
CUGGG	chr9:140260958-140261229(-)$1	271	20	25	14.9999
CUGGG	chr15:101825143-101825426(-)$1	283	101	106	14.9999
CUGGG	chr14:35872460-35872721(-)$1	261	209	214	14.9999
CUGGG	chr19:46180049-46180351(+)$1	302	30	35	14.9999
CUGGG	chrX:48673642-48673912(+)$1	270	205	210	14.9999
CUGGG	chr17:73831030-73831299(-)$1	269	10	15	14.9999
CUGGG	chr7:143079198-143079506(+)$1	308	32	37	14.9999
CUGGG	chr9:35711675-35711894(-)$1	219	118	123	14.9999
CUGGG	chr16:30740126-30740415(+)$1	289	87	92	14.9999
CUGGG	chr11:67048966-67049237(+)$1	271	58	63	14.9999
CUGGG	chr19:7685805-7686076(-)$1	271	95	100	14.9999
CUGGG	chr1:19430996-19431330(-)$1	334	97	102	14.9999
CUGGG	chr8:37976656-37976947(+)$1	291	276	281	14.9999
CUGGG	chr11:129762629-129762906(-)$1	277	252	257	14.9999
CUGGG	chr16:28969882-28970183(+)$1	301	97	102	14.9999
CUGGG	chr6:160489126-160489418(+)$1	292	208	213	14.9999
CUGGG	chr19:11665047-11665310(-)$1	263	78	83	14.9999
CUGGG	chr16:66930-67217(-)$1	287	39	44	14.9999
CUGGG	chr17:42457867-42458185(-)$1	318	64	69	14.9999
CUGGG	chr20:61917383-61917629(+)$1	246	226	231	14.9999
CUGGG	chr9:140136789-140137121(+)$1	332	170	175	14.9999
cuggg	chr8:30669816-30670086(-)$1	270	114	119	14.9999
CUGGG	chr1:150522937-150523202(+)$1	265	16	21	14.9999
CUGGG	chr10:135215480-135215755(+)$1	275	9	14	14.9999
CUGGG	chr19:39331075-39331336(-)$1	261	48	53	14.9999
cuggg	chr10:1126185-1126497(+)$1	312	65	70	14.9999
CUGGG	chr1:228329304-228329565(+)$1	261	98	103	14.9999
CUGGG	chr12:49435212-49435473(-)$1	261	46	51	14.9999
CUGGG	chr12:104179064-104179400(-)$1	336	77	82	14.9999
CUGGG	chr19:15484008-15484336(-)$1	328	285	290	14.9999
CUGGG	chr1:1018238-1018513(-)$1	275	1	6	14.9999
CUGGG	chr3:128514069-128514360(+)$1	291	180	185	14.9999
CUGGG	chr16:89758683-89758957(+)$1	274	8	13	14.9999
CUGGG	chr19:40742173-40742451(-)$1	278	33	38	14.9999
CUGGG	chrX:153279616-153279877(-)$1	261	237	242	14.9999
CUGGG	chr19:2806759-2807049(+)$1	290	79	84	14.9999
CUGGG	chr3:184041015-184041298(+)$1	283	24	29	14.9999
CUGGG	chr22:50873257-50873565(+)$1	308	11	16	14.9999

#otherMatches

#Struct PSSM
GGGGM	chr19:15512258-15512572(-)$1	314	71	76	14.9999
333ee	chr12:133219790-133220041(-)$1	251	95	100	14.9999
DDBBb	chr7:99688068-99688378(+)$1	310	67	72	14.9999
d[ccc	chr5:175956716-175956969(-)$1	253	29	34	14.9999
'dddd	chr1:161130277-161130545(+)$1	268	78	83	14.9999
ddqqq	chr1:180147780-180148081(+)$1	301	227	232	14.9999
E{CCC	chr16:71956265-71956506(+)$1	241	54	59	14.9999
EEFFF	chr17:79880939-79881234(-)$1	295	16	21	14.9999
]ccc2	chr20:33437762-33438018(-)$1	256	115	120	14.9999
EEEEE	chr7:151932891-151933165(-)$1	274	259	264	14.9999
hhhhh	chr1:35900548-35900842(-)$1	294	86	91	14.9999
ccc:d	chr9:35704047-35704329(-)$1	282	13	18	14.9999
YYBBY	chrX:151124205-151124451(-)$1	246	219	224	14.9999
d]ddd	chr17:79680146-79680417(+)$1	271	264	269	14.9999
EKKA{	chr17:80054216-80054483(-)$1	267	83	88	14.9999
::eee	chr11:64535630-64535884(-)$1	254	196	201	14.9999
ee]a]	chr2:54197793-54198038(-)$1	245	109	114	14.9999
a[eee	chr16:1503784-1504026(-)$1	242	61	66	14.9999
LLLFF	chr5:175955984-175956237(-)$1	253	10	15	14.9999
::ddd	chr12:56645734-56646023(-)$1	289	245	250	14.9999
$$bb[	chr9:35738496-35738775(-)$1	279	76	81	14.9999
iiiii	chr17:38191477-38191741(-)$1	264	66	71	14.9999
dd[bb	chr19:54677972-54678269(-)$1	297	4	9	14.9999
iiiii	chr20:60899147-60899479(-)$1	332	83	88	14.9999
=====	chr16:1500532-1500793(-)$1	261	19	24	14.9999
[dddd	chr14:105935641-105935926(+)$1	285	29	34	14.9999
FFFFF	chr12:54801544-54801836(-)$1	292	238	243	14.9999
CKKHH	chr20:39791661-39791966(+)$1	305	3	8	14.9999
:EEEE	chr19:19758194-19758479(-)$1	285	199	204	14.9999
e!!cc	chr8:144668908-144669165(-)$1	257	78	83	14.9999
dd]dd	chr12:48179140-48179412(-)$1	272	81	86	14.9999
::eee	chr9:140260958-140261229(-)$1	271	20	25	14.9999
c22gg	chr15:101825143-101825426(-)$1	283	101	106	14.9999
cc[ff	chr14:35872460-35872721(-)$1	261	209	214	14.9999
cccoo	chr19:46180049-46180351(+)$1	302	30	35	14.9999
mmccc	chrX:48673642-48673912(+)$1	270	205	210	14.9999
KCCC{	chr17:73831030-73831299(-)$1	269	10	15	14.9999
ff!!i	chr7:143079198-143079506(+)$1	308	32	37	14.9999
meeee	chr9:35711675-35711894(-)$1	219	118	123	14.9999
mmeee	chr16:30740126-30740415(+)$1	289	87	92	14.9999
ggggg	chr11:67048966-67049237(+)$1	271	58	63	14.9999
ggggq	chr19:7685805-7686076(-)$1	271	95	100	14.9999
::bbd	chr1:19430996-19431330(-)$1	334	97	102	14.9999
fffff	chr8:37976656-37976947(+)$1	291	276	281	14.9999
e22a:	chr11:129762629-129762906(-)$1	277	252	257	14.9999
iiiii	chr16:28969882-28970183(+)$1	301	97	102	14.9999
#cccm	chr6:160489126-160489418(+)$1	292	208	213	14.9999
IIIII	chr19:11665047-11665310(-)$1	263	78	83	14.9999
FFFFF	chr16:66930-67217(-)$1	287	39	44	14.9999
{EEEE	chr17:42457867-42458185(-)$1	318	64	69	14.9999
EE}AC	chr20:61917383-61917629(+)$1	246	226	231	14.9999
hh[bb	chr9:140136789-140137121(+)$1	332	170	175	14.9999
:CCCK	chr8:30669816-30670086(-)$1	270	114	119	14.9999
CCC:d	chr1:150522937-150523202(+)$1	265	16	21	14.9999
ggggg	chr10:135215480-135215755(+)$1	275	9	14	14.9999
OEEEE	chr19:39331075-39331336(-)$1	261	48	53	14.9999
mmddd	chr10:1126185-1126497(+)$1	312	65	70	14.9999
fff]c	chr1:228329304-228329565(+)$1	261	98	103	14.9999
JJJJK	chr12:49435212-49435473(-)$1	261	46	51	14.9999
FFFFF	chr12:104179064-104179400(-)$1	336	77	82	14.9999
EEEEc	chr19:15484008-15484336(-)$1	328	285	290	14.9999
CC{DD	chr1:1018238-1018513(-)$1	275	1	6	14.9999
::DDD	chr3:128514069-128514360(+)$1	291	180	185	14.9999
F:ggg	chr16:89758683-89758957(+)$1	274	8	13	14.9999
iiiii	chr19:40742173-40742451(-)$1	278	33	38	14.9999
eeeee	chrX:153279616-153279877(-)$1	261	237	242	14.9999
ddfff	chr19:2806759-2807049(+)$1	290	79	84	14.9999
DDDEE	chr3:184041015-184041298(+)$1	283	24	29	14.9999
BB:==	chr22:50873257-50873565(+)$1	308	11	16	14.9999

#DB
((((.	chr19:15512258-15512572(-)$1	1	71	76	14.9999
...))	chr12:133219790-133220041(-)$1	1	95	100	14.9999
(((((	chr7:99688068-99688378(+)$1	1	67	72	14.9999
(.(((	chr5:175956716-175956969(-)$1	1	29	34	14.9999
.((((	chr1:161130277-161130545(+)$1	1	78	83	14.9999
((...	chr1:180147780-180148081(+)$1	1	227	232	14.9999
(.(((	chr16:71956265-71956506(+)$1	1	54	59	14.9999
(((((	chr17:79880939-79881234(-)$1	1	16	21	14.9999
.))).	chr20:33437762-33438018(-)$1	1	115	120	14.9999
)))))	chr7:151932891-151933165(-)$1	1	259	264	14.9999
)))))	chr1:35900548-35900842(-)$1	1	86	91	14.9999
))).(	chr9:35704047-35704329(-)$1	1	13	18	14.9999
..)).	chrX:151124205-151124451(-)$1	1	219	224	14.9999
).)))	chr17:79680146-79680417(+)$1	1	264	269	14.9999
(..(.	chr17:80054216-80054483(-)$1	1	83	88	14.9999
..(((	chr11:64535630-64535884(-)$1	1	196	201	14.9999
)).).	chr2:54197793-54198038(-)$1	1	109	114	14.9999
(.(((	chr16:1503784-1504026(-)$1	1	61	66	14.9999
...((	chr5:175955984-175956237(-)$1	1	10	15	14.9999
..(((	chr12:56645734-56646023(-)$1	1	245	250	14.9999
..((.	chr9:35738496-35738775(-)$1	1	76	81	14.9999
)))))	chr17:38191477-38191741(-)$1	1	66	71	14.9999
((.((	chr19:54677972-54678269(-)$1	1	4	9	14.9999
)))))	chr20:60899147-60899479(-)$1	1	83	88	14.9999
)))))	chr16:1500532-1500793(-)$1	1	19	24	14.9999
.((((	chr14:105935641-105935926(+)$1	1	29	34	14.9999
)))))	chr12:54801544-54801836(-)$1	1	238	243	14.9999
(..((	chr20:39791661-39791966(+)$1	1	3	8	14.9999
.))))	chr19:19758194-19758479(-)$1	1	199	204	14.9999
(..((	chr8:144668908-144669165(-)$1	1	78	83	14.9999
)).))	chr12:48179140-48179412(-)$1	1	81	86	14.9999
..(((	chr9:140260958-140261229(-)$1	1	20	25	14.9999
)..))	chr15:101825143-101825426(-)$1	1	101	106	14.9999
((.((	chr14:35872460-35872721(-)$1	1	209	214	14.9999
(((..	chr19:46180049-46180351(+)$1	1	30	35	14.9999
..)))	chrX:48673642-48673912(+)$1	1	205	210	14.9999
.(((.	chr17:73831030-73831299(-)$1	1	10	15	14.9999
((..(	chr7:143079198-143079506(+)$1	1	32	37	14.9999
.))))	chr9:35711675-35711894(-)$1	1	118	123	14.9999
..)))	chr16:30740126-30740415(+)$1	1	87	92	14.9999
)))))	chr11:67048966-67049237(+)$1	1	58	63	14.9999
((((.	chr19:7685805-7686076(-)$1	1	95	100	14.9999
..(((	chr1:19430996-19431330(-)$1	1	97	102	14.9999
(((((	chr8:37976656-37976947(+)$1	1	276	281	14.9999
)..).	chr11:129762629-129762906(-)$1	1	252	257	14.9999
(((((	chr16:28969882-28970183(+)$1	1	97	102	14.9999
.(((.	chr6:160489126-160489418(+)$1	1	208	213	14.9999
(((((	chr19:11665047-11665310(-)$1	1	78	83	14.9999
(((((	chr16:66930-67217(-)$1	1	39	44	14.9999
.((((	chr17:42457867-42458185(-)$1	1	64	69	14.9999
)).))	chr20:61917383-61917629(+)$1	1	226	231	14.9999
((.((	chr9:140136789-140137121(+)$1	1	170	175	14.9999
.(((.	chr8:30669816-30670086(-)$1	1	114	119	14.9999
(((.(	chr1:150522937-150523202(+)$1	1	16	21	14.9999
(((((	chr10:135215480-135215755(+)$1	1	9	14	14.9999
.((((	chr19:39331075-39331336(-)$1	1	48	53	14.9999
..)))	chr10:1126185-1126497(+)$1	1	65	70	14.9999
))).)	chr1:228329304-228329565(+)$1	1	98	103	14.9999
((((.	chr12:49435212-49435473(-)$1	1	46	51	14.9999
(((((	chr12:104179064-104179400(-)$1	1	77	82	14.9999
))))(	chr19:15484008-15484336(-)$1	1	285	290	14.9999
((.((	chr1:1018238-1018513(-)$1	1	1	6	14.9999
..)))	chr3:128514069-128514360(+)$1	1	180	185	14.9999
(.(((	chr16:89758683-89758957(+)$1	1	8	13	14.9999
(((((	chr19:40742173-40742451(-)$1	1	33	38	14.9999
)))))	chrX:153279616-153279877(-)$1	1	237	242	14.9999
))(((	chr19:2806759-2807049(+)$1	1	79	84	14.9999
(((((	chr3:184041015-184041298(+)$1	1	24	29	14.9999
((.((	chr22:50873257-50873565(+)$1	1	11	16	14.9999

#PSSM
C : 0.94	c : 0.05	
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	

#score	1034.9999999999995
#seq	69
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_CDS_m2_run2.nuc.txt

#NT
CUGGGGG	chr12:125270542-125270852(-)$1	310	0	7	16.0000
GUGGGGG	chr16:31045556-31045929(+)$1	373	136	143	18.0212
AUGGGGG	chr2:232325089-232325300(-)$1	211	134	141	15.0425
CUGGGGG	chr15:75651594-75651848(-)$1	254	196	203	16.0000
CUGGGGG	chr3:49049846-49050119(+)$1	273	64	71	16.0000
guggggg	chr12:58005571-58005839(+)$1	268	78	85	18.0212
GUGGGGG	chr16:841813-842062(+)$1	249	238	245	18.0212
CUGGGGG	chr9:139904698-139904994(-)$1	296	28	35	16.0000
CUGGGGG	chr20:257241-257552(-)$1	311	2	9	16.0000
UUGGGGG	chr2:74757072-74757353(+)$1	281	118	125	15.2553
GUGGGGG	chr9:139905445-139905712(-)$1	267	104	111	18.0212
CUGGGGG	chr16:72138181-72138487(+)$1	306	143	150	16.0000
GUGGGGG	chr3:52561265-52561552(-)$1	287	273	280	18.0212
GUGGGAG	chr1:33820683-33821036(+)$1	353	135	142	14.0851
GUGGGGG	chr9:139564635-139564882(+)$1	247	221	228	18.0212
GUGGGGG	chr10:103589539-103589895(-)$1	356	311	318	18.0212
GUGAGGG	chrX:153693217-153693487(+)$1	270	12	19	14.2978
guggggG	chr12:133295185-133295456(+)$1	271	30	37	18.0212
GUGAGGG	chrX:64754372-64754676(-)$1	304	12	19	14.2978
UUGGGGG	chr3:50223416-50223827(+)$1	411	123	130	15.2553
GUGAGGG	chr11:431634-431926(-)$1	292	79	86	14.2978
GUGAGGG	chrX:151123176-151123419(-)$1	243	113	120	14.2978
GUGGGGG	chr1:110603469-110603742(+)$1	273	0	7	18.0212
GUGGGAG	chr2:242447752-242448020(-)$1	268	101	108	14.0851
UUGGGGG	chr20:3735047-3735375(-)$1	328	93	100	15.2553
GUGGGGG	chr9:139904835-139905113(-)$1	278	247	254	18.0212
CUGGGGG	chr15:75651367-75651678(-)$1	311	26	33	16.0000
GUGGGGG	chr16:1821023-1821340(-)$1	317	60	67	18.0212
GUGGGAG	chr7:100174624-100174850(-)$1	226	101	108	14.0851
GUGGGGG	chr3:9984900-9985200(+)$1	300	37	44	18.0212
GUGGGGG	chr16:67977002-67977278(-)$1	276	68	75	18.0212
UUGGGGG	chr4:1804534-1804796(+)$1	262	25	32	15.2553
GUGGGAG	chr19:58990941-58991243(-)$1	302	38	45	14.0851
CUGGGGG	chr1:36788413-36788700(+)$1	287	231	238	16.0000
AUGGGGG	chr6:33382575-33382956(+)$1	381	49	56	15.0425
GUGGGGG	chr17:72768073-72768344(-)$1	271	102	109	18.0212
guggggg	chr2:220397433-220397717(+)$1	284	28	35	18.0212
CUGGGGG	chr19:46173775-46174038(+)$1	263	85	92	16.0000
CUGGGGG	chr16:28847498-28847748(+)$1	250	14	21	16.0000
GUGAGGG	chr9:139563976-139564202(+)$1	226	197	204	14.2978
GUGGGGG	chr5:176916978-176917312(-)$1	334	115	122	18.0212
GUGGGGG	chr21:46912889-46913211(+)$1	322	9	16	18.0212
CUGGGGG	chr1:155294916-155295267(+)$1	351	63	70	16.0000
GUGGGGG	chr4:994635-994945(+)$1	310	263	270	18.0212
GUGGGGG	chr1:11854320-11854584(-)$1	264	82	89	18.0212
GUGGGAG	chr22:50695502-50695867(-)$1	365	12	19	14.0851

#otherMatches

#Struct PSSM
!!ccc[e	chr22:20073374-20073640(+)$1	266	60	67	14.2978
ffffffq	chr12:125270542-125270852(-)$1	310	0	7	16.0000
fff[ddd	chr16:31045556-31045929(+)$1	373	136	143	18.0212
ZDDDD}E	chr2:232325089-232325300(-)$1	211	134	141	15.0425
bbFFFFF	chr15:75651594-75651848(-)$1	254	196	203	16.0000
fflllff	chr3:49049846-49050119(+)$1	273	64	71	16.0000
hhxxxxx	chr12:58005571-58005839(+)$1	268	78	85	18.0212
\IIIIII	chr16:841813-842062(+)$1	249	238	245	18.0212
ffa[ddd	chr9:139904698-139904994(-)$1	296	28	35	16.0000
ddddddd	chr20:257241-257552(-)$1	311	2	9	16.0000
:::eeee	chr2:74757072-74757353(+)$1	281	118	125	15.2553
ff[ffff	chr9:139905445-139905712(-)$1	267	104	111	18.0212
JJJJJJ}	chr16:72138181-72138487(+)$1	306	143	150	16.0000
EEEEEEE	chr3:52561265-52561552(-)$1	287	273	280	18.0212
IIIIIII	chr1:33820683-33821036(+)$1	353	135	142	14.0851
BB}GGGG	chr9:139564635-139564882(+)$1	247	221	228	18.0212
=======	chr10:103589539-103589895(-)$1	356	311	318	18.0212
JJJJJJJ	chrX:153693217-153693487(+)$1	270	12	19	14.2978
FFFFKKD	chr12:133295185-133295456(+)$1	271	30	37	18.0212
cccpppp	chrX:64754372-64754676(-)$1	304	12	19	14.2978
hhhhFFF	chr3:50223416-50223827(+)$1	411	123	130	15.2553
ccceeee	chr11:431634-431926(-)$1	292	79	86	14.2978
dd[ccco	chrX:151123176-151123419(-)$1	243	113	120	14.2978
::JJJJJ	chr1:110603469-110603742(+)$1	273	0	7	18.0212
::::::=	chr2:242447752-242448020(-)$1	268	101	108	14.0851
[======	chr20:3735047-3735375(-)$1	328	93	100	15.2553
0000000	chr9:139904835-139905113(-)$1	278	247	254	18.0212
EEEEEEE	chr15:75651367-75651678(-)$1	311	26	33	16.0000
HHHHHHH	chr16:1821023-1821340(-)$1	317	60	67	18.0212
eeeee[a	chr7:100174624-100174850(-)$1	226	101	108	14.0851
:DDDD::	chr3:9984900-9985200(+)$1	300	37	44	18.0212
DDDDKKD	chr16:67977002-67977278(-)$1	276	68	75	18.0212
"bbcccm	chr4:1804534-1804796(+)$1	262	25	32	15.2553
b]dddd:	chr19:58990941-58991243(-)$1	302	38	45	14.0851
ggggggg	chr1:36788413-36788700(+)$1	287	231	238	16.0000
!eeeee#	chr6:33382575-33382956(+)$1	381	49	56	15.0425
!!fffff	chr17:72768073-72768344(-)$1	271	102	109	18.0212
B{HHHHH	chr2:220397433-220397717(+)$1	284	28	35	18.0212
fff22aJ	chr19:46173775-46174038(+)$1	263	85	92	16.0000
fffffmm	chr16:28847498-28847748(+)$1	250	14	21	16.0000
DDD}DDD	chr9:139563976-139564202(+)$1	226	197	204	14.2978
]======	chr5:176916978-176917312(-)$1	334	115	122	18.0212
LLA{EEE	chr21:46912889-46913211(+)$1	322	9	16	18.0212
eeeee]b	chr1:155294916-155295267(+)$1	351	63	70	16.0000
4bb]a22	chr4:994635-994945(+)$1	310	263	270	18.0212
JJJJJJJ	chr1:11854320-11854584(-)$1	264	82	89	18.0212
JJJJJJJ	chr22:50695502-50695867(-)$1	365	12	19	14.0851

#DB
..(((.(	chr22:20073374-20073640(+)$1	1	60	67	14.2978
((((((.	chr12:125270542-125270852(-)$1	1	0	7	16.0000
(((.(((	chr16:31045556-31045929(+)$1	1	136	143	18.0212
.)))).)	chr2:232325089-232325300(-)$1	1	134	141	15.0425
)))))))	chr15:75651594-75651848(-)$1	1	196	203	16.0000
((...))	chr3:49049846-49050119(+)$1	1	64	71	16.0000
((.....	chr12:58005571-58005839(+)$1	1	78	85	18.0212
.))))))	chr16:841813-842062(+)$1	1	238	245	18.0212
(((.(((	chr9:139904698-139904994(-)$1	1	28	35	16.0000
(((((((	chr20:257241-257552(-)$1	1	2	9	16.0000
...((((	chr2:74757072-74757353(+)$1	1	118	125	15.2553
((.((((	chr9:139905445-139905712(-)$1	1	104	111	18.0212
)))))).	chr16:72138181-72138487(+)$1	1	143	150	16.0000
)))))))	chr3:52561265-52561552(-)$1	1	273	280	18.0212
(((((((	chr1:33820683-33821036(+)$1	1	135	142	14.0851
)).))))	chr9:139564635-139564882(+)$1	1	221	228	18.0212
)))))))	chr10:103589539-103589895(-)$1	1	311	318	18.0212
(((((((	chrX:153693217-153693487(+)$1	1	12	19	14.2978
((((..(	chr12:133295185-133295456(+)$1	1	30	37	18.0212
(((....	chrX:64754372-64754676(-)$1	1	12	19	14.2978
)))))))	chr3:50223416-50223827(+)$1	1	123	130	15.2553
)))))))	chr11:431634-431926(-)$1	1	79	86	14.2978
((.(((.	chrX:151123176-151123419(-)$1	1	113	120	14.2978
..(((((	chr1:110603469-110603742(+)$1	1	0	7	18.0212
......(	chr2:242447752-242448020(-)$1	1	101	108	14.0851
.((((((	chr20:3735047-3735375(-)$1	1	93	100	15.2553
.......	chr9:139904835-139905113(-)$1	1	247	254	18.0212
(((((((	chr15:75651367-75651678(-)$1	1	26	33	16.0000
(((((((	chr16:1821023-1821340(-)$1	1	60	67	18.0212
(((((.(	chr7:100174624-100174850(-)$1	1	101	108	14.0851
.((((..	chr3:9984900-9985200(+)$1	1	37	44	18.0212
((((..(	chr16:67977002-67977278(-)$1	1	68	75	18.0212
.(((((.	chr4:1804534-1804796(+)$1	1	25	32	15.2553
).)))).	chr19:58990941-58991243(-)$1	1	38	45	14.0851
)))))))	chr1:36788413-36788700(+)$1	1	231	238	16.0000
.(((((.	chr6:33382575-33382956(+)$1	1	49	56	15.0425
..(((((	chr17:72768073-72768344(-)$1	1	102	109	18.0212
(.(((((	chr2:220397433-220397717(+)$1	1	28	35	18.0212
)))..)(	chr19:46173775-46174038(+)$1	1	85	92	16.0000
(((((..	chr16:28847498-28847748(+)$1	1	14	21	16.0000
))).)))	chr9:139563976-139564202(+)$1	1	197	204	14.2978
.))))))	chr5:176916978-176917312(-)$1	1	115	122	18.0212
..(.(((	chr21:46912889-46913211(+)$1	1	9	16	18.0212
))))).)	chr1:155294916-155295267(+)$1	1	63	70	16.0000
.)).)..	chr4:994635-994945(+)$1	1	263	270	18.0212
)))))))	chr1:11854320-11854584(-)$1	1	82	89	18.0212
(((((((	chr22:50695502-50695867(-)$1	1	12	19	14.0851

#PSSM
G : 0.57	C : 0.23	U : 0.08	g : 0.06	A : 0.04	
U : 0.93	u : 0.06	
G : 0.93	g : 0.06	
G : 0.80	A : 0.12	g : 0.06	
G : 0.93	g : 0.06	
G : 0.82	A : 0.10	g : 0.06	
G : 0.95	g : 0.04	

#score	765.7234042553193
#seq	47
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_CDS_m2_run2.nuc.txt

#NT
CCUGCUGC	chr19:59056156-59056402(+)$1	246	204	212	13.6938
CCUGCUUC	chr2:216272966-216273193(-)$1	227	81	89	13.3877
ccuccucc	chr1:234745079-234745357(-)$1	278	70	78	17.2653
CCAACUCC	chr2:216279513-216279767(-)$1	254	134	142	14.1020
CCUCCUGC	chrM:15085-15306(+)$1	221	15	23	13.5918
CCUACUCC	chrM:6160-6368(+)$1	208	70	78	18.1836
CCUACUCC	chrM:6095-6345(+)$1	250	135	143	18.1836
CCUGUUCC	chr5:179247988-179248234(+)$1	246	106	114	13.7959
CCUACUCC	chrM:6176-6384(+)$1	208	54	62	18.1836
CCUGCUCC	chr7:45928340-45928575(+)$1	235	5	13	17.3673
CCUACCCC	chrM:9307-9540(+)$1	233	221	229	13.5918
ccugcucc	chr7:45928444-45928689(+)$1	245	172	180	17.3673
CCUCCUGC	chr4:74318187-74318430(+)$1	243	68	76	13.5918
CCCGCUCC	chr1:2126017-2126311(-)$1	294	222	230	13.3877
CCUCCUCC	chr2:216256353-216256638(-)$1	285	106	114	17.2653
CCAACUCC	chr2:216279458-216279687(-)$1	229	54	62	14.1020
CCUACUCC	chrM:10580-10786(+)$1	206	171	179	18.1836
CCUCCUCC	chr19:47249399-47249656(-)$1	257	9	17	17.2653
CCUCUUCC	chrM:14922-15152(+)$1	230	103	111	13.6938
CCUGCUGC	chr19:14552003-14552274(+)$1	271	184	192	13.6938
CCUAUUCC	chrM:12662-12870(+)$1	208	82	90	14.6122
CCUCUUCC	chrM:15017-15226(+)$1	209	8	16	13.6938
CCUACUCC	chrM:3296-3548(+)$1	252	28	36	18.1836
ACUACUCC	chr19:6697304-6697566(-)$1	262	10	18	13.5918
CCUACUCC	chrM:6184-6400(+)$1	216	46	54	18.1836
ACUACUCC	chrM:6537-6773(+)$1	236	145	153	13.5918
CCUGCUCC	chr7:45928263-45928524(+)$1	261	82	90	17.3673
CCUCCUCC	chrM:12757-12999(+)$1	242	224	232	17.2653
CCUGCUCC	chr3:186330821-186331092(+)$1	271	123	131	17.3673
CCUACUCC	chrM:3219-3456(+)$1	237	105	113	18.1836
CCUCCUCC	chr16:28877636-28877877(+)$1	241	206	214	17.2653
CCUACACC	chr3:186337575-186337821(+)$1	246	178	186	13.6938
CCCGCUCC	chr17:7154514-7154776(-)$1	262	21	29	13.3877
CCGCCUCC	chr6:170893553-170893810(-)$1	257	31	39	13.1836
CCCCCUCC	chr20:62371657-62371968(+)$1	311	20	28	13.2857
CCUGCUGC	chr1:230841578-230841799(-)$1	221	19	27	13.6938
CCUAUUCC	chrM:12684-12901(+)$1	217	60	68	14.6122
CCUGCUUC	chr16:3767290-3767590(-)$1	300	260	268	13.3877
CCUGCUCG	chr1:230839955-230840180(-)$1	225	154	162	12.7755
CCUACUCU	chr19:59056284-59056560(+)$1	276	212	220	13.6938
CCUACUCC	chrM:10575-10780(+)$1	205	176	184	18.1836
ccuacucu	chr19:2015513-2015791(-)$1	278	3	11	13.6938
ccgccucc	chr16:23847341-23847639(+)$1	298	68	76	13.1836
CCUGCACC	chr3:133473288-133473618(+)$1	330	5	13	12.8775
CCUCCUAC	chr3:133467191-133467452(+)$1	261	205	213	13.1836
CCUAUUCC	chrM:12654-12862(+)$1	208	90	98	14.6122
CCUAUUCC	chrM:12724-12939(+)$1	215	20	28	14.6122
CCUACUCC	chrM:6149-6355(+)$1	206	81	89	18.1836

#otherMatches

#Struct PSSM
ccc!!hhh	chrM:6155-6360(+)$1	205	75	83	18.1836
ffff22dd	chr19:59056156-59056402(+)$1	246	204	212	13.6938
CIIIIIII	chr2:216272966-216273193(-)$1	227	81	89	13.3877
========	chr1:234745079-234745357(-)$1	278	70	78	17.2653
pppddddd	chr2:216279513-216279767(-)$1	254	134	142	14.1020
rrrrrccc	chrM:15085-15306(+)$1	221	15	23	13.5918
ccc!!hhh	chrM:6160-6368(+)$1	208	70	78	18.1836
ccc!!hhh	chrM:6095-6345(+)$1	250	135	143	18.1836
:ffffff[	chr5:179247988-179248234(+)$1	246	106	114	13.7959
ccc!!hhh	chrM:6176-6384(+)$1	208	54	62	18.1836
EEEEEKKC	chr7:45928340-45928575(+)$1	235	5	13	17.3673
::::::::	chrM:9307-9540(+)$1	233	221	229	13.5918
eeeee::C	chr7:45928444-45928689(+)$1	245	172	180	17.3673
ggggggg:	chr4:74318187-74318430(+)$1	243	68	76	13.5918
iHHHHHHH	chr1:2126017-2126311(-)$1	294	222	230	13.3877
::::::::	chr2:216256353-216256638(-)$1	285	106	114	17.2653
pppdddd:	chr2:216279458-216279687(-)$1	229	54	62	14.1020
::::::::	chrM:10580-10786(+)$1	206	171	179	18.1836
======gg	chr19:47249399-47249656(-)$1	257	9	17	17.2653
eeee[ccc	chrM:14922-15152(+)$1	230	103	111	13.6938
ffffff]b	chr19:14552003-14552274(+)$1	271	184	192	13.6938
::::::::	chrM:12662-12870(+)$1	208	82	90	14.6122
eeee[ccc	chrM:15017-15226(+)$1	209	8	16	13.6938
::cccqqq	chrM:3296-3548(+)$1	252	28	36	18.1836
nnnnneee	chr19:6697304-6697566(-)$1	262	10	18	13.5918
ccc!!hhh	chrM:6184-6400(+)$1	216	46	54	18.1836
ooccc:HH	chrM:6537-6773(+)$1	236	145	153	13.5918
!bb[cccm	chr7:45928263-45928524(+)$1	261	82	90	17.3673
ooooooee	chrM:12757-12999(+)$1	242	224	232	17.2653
]dddd:::	chr3:186330821-186331092(+)$1	271	123	131	17.3673
::cccqqq	chrM:3219-3456(+)$1	237	105	113	18.1836
::::DDDD	chr16:28877636-28877877(+)$1	241	206	214	17.2653
IIIIIIGG	chr3:186337575-186337821(+)$1	246	178	186	13.6938
iiiFFFFF	chr17:7154514-7154776(-)$1	262	21	29	13.3877
mccc]a]c	chr6:170893553-170893810(-)$1	257	31	39	13.1836
oooooddd	chr20:62371657-62371968(+)$1	311	20	28	13.2857
ooobb]cc	chr1:230841578-230841799(-)$1	221	19	27	13.6938
::::::::	chrM:12684-12901(+)$1	217	60	68	14.6122
ddd[bb[a	chr16:3767290-3767590(-)$1	300	260	268	13.3877
ccffffff	chr1:230839955-230840180(-)$1	225	154	162	12.7755
ccc!!ggg	chr19:59056284-59056560(+)$1	276	212	220	13.6938
::::::::	chrM:10575-10780(+)$1	205	176	184	18.1836
::::::::	chr19:2015513-2015791(-)$1	278	3	11	13.6938
h:BBDDDD	chr16:23847341-23847639(+)$1	298	68	76	13.1836
:eeeee!!	chr3:133473288-133473618(+)$1	330	5	13	12.8775
qqbb]ccc	chr3:133467191-133467452(+)$1	261	205	213	13.1836
::::::::	chrM:12654-12862(+)$1	208	90	98	14.6122
::::::::	chrM:12724-12939(+)$1	215	20	28	14.6122
ccc!!hhh	chrM:6149-6355(+)$1	206	81	89	18.1836

#DB
(((..(((	chrM:6155-6360(+)$1	1	75	83	18.1836
))))..))	chr19:59056156-59056402(+)$1	1	204	212	13.6938
((((((((	chr2:216272966-216273193(-)$1	1	81	89	13.3877
))))))))	chr1:234745079-234745357(-)$1	1	70	78	17.2653
...))))(	chr2:216279513-216279767(-)$1	1	134	142	14.1020
.....)))	chrM:15085-15306(+)$1	1	15	23	13.5918
(((..(((	chrM:6160-6368(+)$1	1	70	78	18.1836
(((..(((	chrM:6095-6345(+)$1	1	135	143	18.1836
.((((((.	chr5:179247988-179248234(+)$1	1	106	114	13.7959
(((..(((	chrM:6176-6384(+)$1	1	54	62	18.1836
(((((..(	chr7:45928340-45928575(+)$1	1	5	13	17.3673
........	chrM:9307-9540(+)$1	1	221	229	13.5918
)))))..)	chr7:45928444-45928689(+)$1	1	172	180	17.3673
))))))).	chr4:74318187-74318430(+)$1	1	68	76	13.5918
))))))))	chr1:2126017-2126311(-)$1	1	222	230	13.3877
........	chr2:216256353-216256638(-)$1	1	106	114	17.2653
...)))).	chr2:216279458-216279687(-)$1	1	54	62	14.1020
........	chrM:10580-10786(+)$1	1	171	179	18.1836
((((((((	chr19:47249399-47249656(-)$1	1	9	17	17.2653
((((.(((	chrM:14922-15152(+)$1	1	103	111	13.6938
)))))).)	chr19:14552003-14552274(+)$1	1	184	192	13.6938
........	chrM:12662-12870(+)$1	1	82	90	14.6122
((((.(((	chrM:15017-15226(+)$1	1	8	16	13.6938
..(((...	chrM:3296-3548(+)$1	1	28	36	18.1836
.....)))	chr19:6697304-6697566(-)$1	1	10	18	13.5918
(((..(((	chrM:6184-6400(+)$1	1	46	54	18.1836
..))).))	chrM:6537-6773(+)$1	1	145	153	13.5918
.((.(((.	chr7:45928263-45928524(+)$1	1	82	90	17.3673
......))	chrM:12757-12999(+)$1	1	224	232	17.2653
.))))...	chr3:186330821-186331092(+)$1	1	123	131	17.3673
..(((...	chrM:3219-3456(+)$1	1	105	113	18.1836
....))))	chr16:28877636-28877877(+)$1	1	206	214	17.2653
))))))))	chr3:186337575-186337821(+)$1	1	178	186	13.6938
)))(((((	chr17:7154514-7154776(-)$1	1	21	29	13.3877
.))).).)	chr6:170893553-170893810(-)$1	1	31	39	13.1836
.....)))	chr20:62371657-62371968(+)$1	1	20	28	13.2857
...)).))	chr1:230841578-230841799(-)$1	1	19	27	13.6938
........	chrM:12684-12901(+)$1	1	60	68	14.6122
(((.((.(	chr16:3767290-3767590(-)$1	1	260	268	13.3877
))((((((	chr1:230839955-230840180(-)$1	1	154	162	12.7755
(((..(((	chr19:59056284-59056560(+)$1	1	212	220	13.6938
........	chrM:10575-10780(+)$1	1	176	184	18.1836
........	chr19:2015513-2015791(-)$1	1	3	11	13.6938
).((((((	chr16:23847341-23847639(+)$1	1	68	76	13.1836
.(((((..	chr3:133473288-133473618(+)$1	1	5	13	12.8775
..)).)))	chr3:133467191-133467452(+)$1	1	205	213	13.1836
........	chrM:12654-12862(+)$1	1	90	98	14.6122
........	chrM:12724-12939(+)$1	1	20	28	14.6122
(((..(((	chrM:6149-6355(+)$1	1	81	89	18.1836

#PSSM
C : 0.87	c : 0.08	A : 0.04	
C : 0.91	c : 0.08	
U : 0.79	u : 0.06	C : 0.06	A : 0.04	G : 0.02	g : 0.02	
A : 0.42	G : 0.26	C : 0.22	c : 0.04	g : 0.02	a : 0.02	
C : 0.77	U : 0.14	c : 0.08	
U : 0.85	u : 0.08	A : 0.04	C : 0.02	
C : 0.75	G : 0.10	c : 0.08	U : 0.04	A : 0.02	
C : 0.87	c : 0.06	G : 0.02	U : 0.02	u : 0.02	

#score	747.6326530612249
#seq	49
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_CDS_m3_run1.nuc.txt

#NT
UGA	chr21:46916865-46917093(+)$1	228	33	36	8.9999
UGA	chr2:216256255-216256481(-)$1	226	26	29	8.9999
UGA	chr4:74314962-74315213(+)$1	251	28	31	8.9999
UGA	chr2:21241784-21242044(-)$1	260	14	17	8.9999
UGA	chr4:74318216-74318438(+)$1	222	26	29	8.9999
UGA	chr2:63091764-63092003(+)$1	239	27	30	8.9999
UGA	chrX:133087132-133087336(-)$1	204	5	8	8.9999
UGA	chr11:65826883-65827122(+)$1	239	3	6	8.9999
UGA	chrX:70793400-70793694(+)$1	294	19	22	8.9999
UGA	chr19:572529-572799(+)$1	270	173	176	8.9999
UGA	chr2:216251336-216251613(-)$1	277	181	184	8.9999
UGA	chr3:133474171-133474439(+)$1	268	28	31	8.9999
UGA	chr19:6696332-6696562(-)$1	230	13	16	8.9999
UGA	chr3:133476548-133476788(+)$1	240	57	60	8.9999
UGA	chr21:46917414-46917633(+)$1	219	69	72	8.9999
UGA	chr2:54856020-54856307(+)$1	287	5	8	8.9999
UGA	chr12:57596104-57596365(+)$1	261	26	29	8.9999
UGA	chr6:160492875-160493133(+)$1	258	1	4	8.9999
UGA	chr17:79817090-79817364(-)$1	274	3	6	8.9999
UGA	chr4:74275060-74275304(+)$1	244	20	23	8.9999
UGA	chr2:216249513-216249743(-)$1	230	4	7	8.9999
UGA	chr2:216300337-216300569(-)$1	232	193	196	8.9999
UGA	chr2:54876971-54877227(+)$1	256	64	67	8.9999
UGA	chr6:44220681-44220934(+)$1	253	35	38	8.9999
UGA	chr3:186337562-186337773(+)$1	211	21	24	8.9999
UGA	chr19:6692915-6693156(-)$1	241	4	7	8.9999
UGA	chr2:216271030-216271280(-)$1	250	18	21	8.9999
UGA	chr2:216248669-216248927(-)$1	258	99	102	8.9999
uga	chr16:30079865-30080122(+)$1	257	1	4	8.9999
UGA	chr18:60383042-60383314(+)$1	272	37	40	8.9999
UGA	chr2:42472565-42472847(+)$1	282	80	83	8.9999
UGA	chr21:46899888-46900117(+)$1	229	70	73	8.9999
UGA	chr4:74283704-74283954(+)$1	250	70	73	8.9999
UGA	chr2:216288828-216289082(-)$1	254	8	11	8.9999
UGA	chr6:144779805-144780027(+)$1	222	0	3	8.9999
UGA	chr2:216288774-216288991(-)$1	217	82	85	8.9999
UGA	chr2:216259150-216259384(-)$1	234	18	21	8.9999
UGA	chr6:168281077-168281298(+)$1	221	59	62	8.9999
UGA	chr17:48821910-48822173(+)$1	263	35	38	8.9999
UGA	chrX:18954138-18954368(-)$1	230	13	16	8.9999
UGA	chr17:48818916-48819139(+)$1	223	124	127	8.9999
UGA	chr19:6678188-6678397(-)$1	209	106	109	8.9999
UGA	chr9:117044636-117044845(+)$1	209	72	75	8.9999
UGA	chr3:133476630-133476854(+)$1	224	119	122	8.9999
UGA	chr2:54857899-54858282(+)$1	383	116	119	8.9999
UGA	chr2:216235042-216235255(-)$1	213	17	20	8.9999
UGA	chr2:216263925-216264158(-)$1	233	42	45	8.9999
UGA	chr22:42264605-42264892(+)$1	287	36	39	8.9999
UGA	chr10:101567143-101567374(+)$1	231	1	4	8.9999
UGA	chr7:103236891-103237164(-)$1	273	27	30	8.9999
UGA	chr14:95081238-95081516(+)$1	278	43	46	8.9999
UGA	chr16:2813872-2814108(+)$1	236	13	16	8.9999
UGA	chr12:125348068-125348351(-)$1	283	167	170	8.9999
UGA	chr2:216259196-216259456(-)$1	260	90	93	8.9999
UGA	chr21:27394098-27394428(-)$1	330	21	24	8.9999
UGA	chr4:74306218-74306421(+)$1	203	8	11	8.9999
UGA	chr11:129998997-129999202(+)$1	205	39	42	8.9999
UGA	chr3:172046640-172046913(+)$1	273	159	162	8.9999
UGA	chr2:216226698-216226902(-)$1	204	8	11	8.9999
UGA	chr3:186338562-186338796(+)$1	234	174	177	8.9999
UGA	chr19:6696362-6696576(-)$1	214	27	30	8.9999
UGA	chr19:579433-579714(+)$1	281	40	43	8.9999
UGA	chr19:35502290-35502571(+)$1	281	9	12	8.9999
UGA	chr2:216271080-216271333(-)$1	253	0	3	8.9999
UGA	chr1:19467820-19468118(-)$1	298	78	81	8.9999
UGA	chr19:6719137-6719370(-)$1	233	94	97	8.9999
UGA	chr21:46906685-46906924(+)$1	239	63	66	8.9999
UGA	chr19:6706989-6707244(-)$1	255	20	23	8.9999
UGA	chr2:11772927-11773194(+)$1	267	60	63	8.9999
UGA	chr13:98995922-98996220(+)$1	298	155	158	8.9999
UGA	chr11:116706770-116707021(-)$1	251	10	13	8.9999
UGA	chr4:184129174-184129411(+)$1	237	48	51	8.9999
UGA	chr19:6697270-6697498(-)$1	228	113	116	8.9999
UGA	chr6:144795674-144795985(+)$1	311	34	37	8.9999
UGA	chr2:216263889-216264125(-)$1	236	9	12	8.9999
UGA	chr14:94848868-94849112(-)$1	244	137	140	8.9999
UGA	chr12:9229308-9229526(-)$1	218	155	158	8.9999
UGA	chr10:101591327-101591582(+)$1	255	21	24	8.9999
uga	chr2:21252756-21252985(-)$1	229	1	4	8.9999
UGA	chr6:119669609-119669876(-)$1	267	134	137	8.9999
UGA	chr2:216274186-216274395(-)$1	209	72	75	8.9999
UGA	chr22:36680348-36680592(-)$1	244	11	14	8.9999
UGA	chr14:55034447-55034741(+)$1	294	9	12	8.9999
UGA	chr6:144844086-144844345(+)$1	259	7	10	8.9999
UGA	chr2:216261773-216261997(-)$1	224	23	26	8.9999
UGA	chr9:124080840-124081073(+)$1	233	34	37	8.9999
UGA	chr2:216288123-216288349(-)$1	226	0	3	8.9999
UGA	chrX:132670208-132670420(-)$1	212	49	52	8.9999
UGA	chr4:74318115-74318351(+)$1	236	4	7	8.9999
UGA	chr2:216288079-216288323(-)$1	244	153	156	8.9999
UGA	chr2:216269012-216269219(-)$1	207	12	15	8.9999
UGA	chr2:216300277-216300486(-)$1	209	110	113	8.9999
UGA	chr2:54849414-54849709(+)$1	295	27	30	8.9999
UGA	chrX:132826329-132826577(-)$1	248	9	12	8.9999
UGA	chr6:144759883-144760127(+)$1	244	11	14	8.9999
UGA	chr2:216273038-216273248(-)$1	210	2	5	8.9999

#otherMatches

#Struct PSSM
CC:	chr9:116823736-116823969(-)$1	233	3	6	8.9999
CC:	chr21:46916865-46917093(+)$1	228	33	36	8.9999
bb:	chr2:216256255-216256481(-)$1	226	26	29	8.9999
QQQ	chr4:74314962-74315213(+)$1	251	28	31	8.9999
:::	chr2:21241784-21242044(-)$1	260	14	17	8.9999
drr	chr4:74318216-74318438(+)$1	222	26	29	8.9999
:::	chr2:63091764-63092003(+)$1	239	27	30	8.9999
$$$	chrX:133087132-133087336(-)$1	204	5	8	8.9999
:::	chr11:65826883-65827122(+)$1	239	3	6	8.9999
D::	chrX:70793400-70793694(+)$1	294	19	22	8.9999
bnn	chr19:572529-572799(+)$1	270	173	176	8.9999
ggg	chr2:216251336-216251613(-)$1	277	181	184	8.9999
nnn	chr3:133474171-133474439(+)$1	268	28	31	8.9999
nnd	chr19:6696332-6696562(-)$1	230	13	16	8.9999
ohh	chr3:133476548-133476788(+)$1	240	57	60	8.9999
ee!	chr21:46917414-46917633(+)$1	219	69	72	8.9999
HHH	chr2:54856020-54856307(+)$1	287	5	8	8.9999
qqq	chr12:57596104-57596365(+)$1	261	26	29	8.9999
:::	chr6:160492875-160493133(+)$1	258	1	4	8.9999
CCK	chr17:79817090-79817364(-)$1	274	3	6	8.9999
:::	chr4:74275060-74275304(+)$1	244	20	23	8.9999
:::	chr2:216249513-216249743(-)$1	230	4	7	8.9999
b44	chr2:216300337-216300569(-)$1	232	193	196	8.9999
III	chr2:54876971-54877227(+)$1	256	64	67	8.9999
qqq	chr6:44220681-44220934(+)$1	253	35	38	8.9999
dll	chr3:186337562-186337773(+)$1	211	21	24	8.9999
HHH	chr19:6692915-6693156(-)$1	241	4	7	8.9999
b[c	chr2:216271030-216271280(-)$1	250	18	21	8.9999
fff	chr2:216248669-216248927(-)$1	258	99	102	8.9999
ddd	chr16:30079865-30080122(+)$1	257	1	4	8.9999
FFL	chr18:60383042-60383314(+)$1	272	37	40	8.9999
666	chr2:42472565-42472847(+)$1	282	80	83	8.9999
KCC	chr21:46899888-46900117(+)$1	229	70	73	8.9999
eee	chr4:74283704-74283954(+)$1	250	70	73	8.9999
CCL	chr2:216288828-216289082(-)$1	254	8	11	8.9999
:::	chr6:144779805-144780027(+)$1	222	0	3	8.9999
>cc	chr2:216288774-216288991(-)$1	217	82	85	8.9999
ddf	chr2:216259150-216259384(-)$1	234	18	21	8.9999
HHH	chr6:168281077-168281298(+)$1	221	59	62	8.9999
eee	chr17:48821910-48822173(+)$1	263	35	38	8.9999
eee	chrX:18954138-18954368(-)$1	230	13	16	8.9999
===	chr17:48818916-48819139(+)$1	223	124	127	8.9999
fff	chr19:6678188-6678397(-)$1	209	106	109	8.9999
ggg	chr9:117044636-117044845(+)$1	209	72	75	8.9999
ccc	chr3:133476630-133476854(+)$1	224	119	122	8.9999
igg	chr2:54857899-54858282(+)$1	383	116	119	8.9999
[cc	chr2:216235042-216235255(-)$1	213	17	20	8.9999
ggg	chr2:216263925-216264158(-)$1	233	42	45	8.9999
CCC	chr22:42264605-42264892(+)$1	287	36	39	8.9999
:::	chr10:101567143-101567374(+)$1	231	1	4	8.9999
:cc	chr7:103236891-103237164(-)$1	273	27	30	8.9999
:::	chr14:95081238-95081516(+)$1	278	43	46	8.9999
c!!	chr16:2813872-2814108(+)$1	236	13	16	8.9999
=mm	chr12:125348068-125348351(-)$1	283	167	170	8.9999
coo	chr2:216259196-216259456(-)$1	260	90	93	8.9999
:::	chr21:27394098-27394428(-)$1	330	21	24	8.9999
:::	chr4:74306218-74306421(+)$1	203	8	11	8.9999
ddd	chr11:129998997-129999202(+)$1	205	39	42	8.9999
KEE	chr3:172046640-172046913(+)$1	273	159	162	8.9999
ccc	chr2:216226698-216226902(-)$1	204	8	11	8.9999
d::	chr3:186338562-186338796(+)$1	234	174	177	8.9999
nnd	chr19:6696362-6696576(-)$1	214	27	30	8.9999
CBB	chr19:579433-579714(+)$1	281	40	43	8.9999
###	chr19:35502290-35502571(+)$1	281	9	12	8.9999
:::	chr2:216271080-216271333(-)$1	253	0	3	8.9999
dd[	chr1:19467820-19468118(-)$1	298	78	81	8.9999
fff	chr19:6719137-6719370(-)$1	233	94	97	8.9999
ee[	chr21:46906685-46906924(+)$1	239	63	66	8.9999
ooo	chr19:6706989-6707244(-)$1	255	20	23	8.9999
dd2	chr2:11772927-11773194(+)$1	267	60	63	8.9999
ee:	chr13:98995922-98996220(+)$1	298	155	158	8.9999
e!!	chr11:116706770-116707021(-)$1	251	10	13	8.9999
{DD	chr4:184129174-184129411(+)$1	237	48	51	8.9999
eee	chr19:6697270-6697498(-)$1	228	113	116	8.9999
&&&	chr6:144795674-144795985(+)$1	311	34	37	8.9999
ggg	chr2:216263889-216264125(-)$1	236	9	12	8.9999
eee	chr14:94848868-94849112(-)$1	244	137	140	8.9999
:ee	chr12:9229308-9229526(-)$1	218	155	158	8.9999
&&f	chr10:101591327-101591582(+)$1	255	21	24	8.9999
fff	chr2:21252756-21252985(-)$1	229	1	4	8.9999
[bb	chr6:119669609-119669876(-)$1	267	134	137	8.9999
:HH	chr2:216274186-216274395(-)$1	209	72	75	8.9999
DDK	chr22:36680348-36680592(-)$1	244	11	14	8.9999
ccm	chr14:55034447-55034741(+)$1	294	9	12	8.9999
f!!	chr6:144844086-144844345(+)$1	259	7	10	8.9999
eee	chr2:216261773-216261997(-)$1	224	23	26	8.9999
EE{	chr9:124080840-124081073(+)$1	233	34	37	8.9999
fff	chr2:216288123-216288349(-)$1	226	0	3	8.9999
:dd	chrX:132670208-132670420(-)$1	212	49	52	8.9999
===	chr4:74318115-74318351(+)$1	236	4	7	8.9999
}FF	chr2:216288079-216288323(-)$1	244	153	156	8.9999
HHH	chr2:216269012-216269219(-)$1	207	12	15	8.9999
b44	chr2:216300277-216300486(-)$1	209	110	113	8.9999
III	chr2:54849414-54849709(+)$1	295	27	30	8.9999
{EE	chrX:132826329-132826577(-)$1	248	9	12	8.9999
GGG	chr6:144759883-144760127(+)$1	244	11	14	8.9999
:dd	chr2:216273038-216273248(-)$1	210	2	5	8.9999

#DB
((.	chr9:116823736-116823969(-)$1	1	3	6	8.9999
((.	chr21:46916865-46917093(+)$1	1	33	36	8.9999
)).	chr2:216256255-216256481(-)$1	1	26	29	8.9999
...	chr4:74314962-74315213(+)$1	1	28	31	8.9999
...	chr2:21241784-21242044(-)$1	1	14	17	8.9999
(..	chr4:74318216-74318438(+)$1	1	26	29	8.9999
...	chr2:63091764-63092003(+)$1	1	27	30	8.9999
...	chrX:133087132-133087336(-)$1	1	5	8	8.9999
...	chr11:65826883-65827122(+)$1	1	3	6	8.9999
(..	chrX:70793400-70793694(+)$1	1	19	22	8.9999
(..	chr19:572529-572799(+)$1	1	173	176	8.9999
(((	chr2:216251336-216251613(-)$1	1	181	184	8.9999
...	chr3:133474171-133474439(+)$1	1	28	31	8.9999
..)	chr19:6696332-6696562(-)$1	1	13	16	8.9999
.))	chr3:133476548-133476788(+)$1	1	57	60	8.9999
((.	chr21:46917414-46917633(+)$1	1	69	72	8.9999
(((	chr2:54856020-54856307(+)$1	1	5	8	8.9999
...	chr12:57596104-57596365(+)$1	1	26	29	8.9999
...	chr6:160492875-160493133(+)$1	1	1	4	8.9999
((.	chr17:79817090-79817364(-)$1	1	3	6	8.9999
...	chr4:74275060-74275304(+)$1	1	20	23	8.9999
...	chr2:216249513-216249743(-)$1	1	4	7	8.9999
)..	chr2:216300337-216300569(-)$1	1	193	196	8.9999
(((	chr2:54876971-54877227(+)$1	1	64	67	8.9999
...	chr6:44220681-44220934(+)$1	1	35	38	8.9999
(..	chr3:186337562-186337773(+)$1	1	21	24	8.9999
(((	chr19:6692915-6693156(-)$1	1	4	7	8.9999
(.(	chr2:216271030-216271280(-)$1	1	18	21	8.9999
)))	chr2:216248669-216248927(-)$1	1	99	102	8.9999
(((	chr16:30079865-30080122(+)$1	1	1	4	8.9999
((.	chr18:60383042-60383314(+)$1	1	37	40	8.9999
...	chr2:42472565-42472847(+)$1	1	80	83	8.9999
.((	chr21:46899888-46900117(+)$1	1	70	73	8.9999
)))	chr4:74283704-74283954(+)$1	1	70	73	8.9999
((.	chr2:216288828-216289082(-)$1	1	8	11	8.9999
...	chr6:144779805-144780027(+)$1	1	0	3	8.9999
.))	chr2:216288774-216288991(-)$1	1	82	85	8.9999
(((	chr2:216259150-216259384(-)$1	1	18	21	8.9999
(((	chr6:168281077-168281298(+)$1	1	59	62	8.9999
)))	chr17:48821910-48822173(+)$1	1	35	38	8.9999
(((	chrX:18954138-18954368(-)$1	1	13	16	8.9999
)))	chr17:48818916-48819139(+)$1	1	124	127	8.9999
(((	chr19:6678188-6678397(-)$1	1	106	109	8.9999
(((	chr9:117044636-117044845(+)$1	1	72	75	8.9999
(((	chr3:133476630-133476854(+)$1	1	119	122	8.9999
)((	chr2:54857899-54858282(+)$1	1	116	119	8.9999
.((	chr2:216235042-216235255(-)$1	1	17	20	8.9999
(((	chr2:216263925-216264158(-)$1	1	42	45	8.9999
(((	chr22:42264605-42264892(+)$1	1	36	39	8.9999
...	chr10:101567143-101567374(+)$1	1	1	4	8.9999
.((	chr7:103236891-103237164(-)$1	1	27	30	8.9999
...	chr14:95081238-95081516(+)$1	1	43	46	8.9999
(..	chr16:2813872-2814108(+)$1	1	13	16	8.9999
(..	chr12:125348068-125348351(-)$1	1	167	170	8.9999
(..	chr2:216259196-216259456(-)$1	1	90	93	8.9999
...	chr21:27394098-27394428(-)$1	1	21	24	8.9999
...	chr4:74306218-74306421(+)$1	1	8	11	8.9999
(((	chr11:129998997-129999202(+)$1	1	39	42	8.9999
.((	chr3:172046640-172046913(+)$1	1	159	162	8.9999
(((	chr2:216226698-216226902(-)$1	1	8	11	8.9999
)..	chr3:186338562-186338796(+)$1	1	174	177	8.9999
..)	chr19:6696362-6696576(-)$1	1	27	30	8.9999
(((	chr19:579433-579714(+)$1	1	40	43	8.9999
...	chr19:35502290-35502571(+)$1	1	9	12	8.9999
...	chr2:216271080-216271333(-)$1	1	0	3	8.9999
((.	chr1:19467820-19468118(-)$1	1	78	81	8.9999
)))	chr19:6719137-6719370(-)$1	1	94	97	8.9999
((.	chr21:46906685-46906924(+)$1	1	63	66	8.9999
...	chr19:6706989-6707244(-)$1	1	20	23	8.9999
)).	chr2:11772927-11773194(+)$1	1	60	63	8.9999
)).	chr13:98995922-98996220(+)$1	1	155	158	8.9999
(..	chr11:116706770-116707021(-)$1	1	10	13	8.9999
.((	chr4:184129174-184129411(+)$1	1	48	51	8.9999
)))	chr19:6697270-6697498(-)$1	1	113	116	8.9999
...	chr6:144795674-144795985(+)$1	1	34	37	8.9999
(((	chr2:216263889-216264125(-)$1	1	9	12	8.9999
)))	chr14:94848868-94849112(-)$1	1	137	140	8.9999
.((	chr12:9229308-9229526(-)$1	1	155	158	8.9999
..(	chr10:101591327-101591582(+)$1	1	21	24	8.9999
(((	chr2:21252756-21252985(-)$1	1	1	4	8.9999
.((	chr6:119669609-119669876(-)$1	1	134	137	8.9999
.))	chr2:216274186-216274395(-)$1	1	72	75	8.9999
((.	chr22:36680348-36680592(-)$1	1	11	14	8.9999
((.	chr14:55034447-55034741(+)$1	1	9	12	8.9999
(..	chr6:144844086-144844345(+)$1	1	7	10	8.9999
)))	chr2:216261773-216261997(-)$1	1	23	26	8.9999
((.	chr9:124080840-124081073(+)$1	1	34	37	8.9999
(((	chr2:216288123-216288349(-)$1	1	0	3	8.9999
.((	chrX:132670208-132670420(-)$1	1	49	52	8.9999
(((	chr4:74318115-74318351(+)$1	1	4	7	8.9999
.))	chr2:216288079-216288323(-)$1	1	153	156	8.9999
(((	chr2:216269012-216269219(-)$1	1	12	15	8.9999
)..	chr2:216300277-216300486(-)$1	1	110	113	8.9999
(((	chr2:54849414-54849709(+)$1	1	27	30	8.9999
.((	chrX:132826329-132826577(-)$1	1	9	12	8.9999
(((	chr6:144759883-144760127(+)$1	1	11	14	8.9999
.((	chr2:216273038-216273248(-)$1	1	2	5	8.9999

#PSSM
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_UTR_m1_run2.nuc.txt

#NT
CUCCAG	chr7:151074577-151074835(+)$1	258	93	99	14.9607
CUCCAG	chr22:41676941-41677154(-)$1	213	77	83	14.9607
CUCCAU	chr5:110463187-110463432(+)$1	245	126	132	11.1372
CUUCAG	chr22:38687501-38687768(-)$1	267	21	27	12.2156
CUACAG	chr4:79832149-79832357(+)$1	208	8	14	11.8235
CUGCAG	chr17:27075040-27075256(+)$1	216	8	14	12.9019
CUCCAG	chr19:13064226-13064433(+)$1	207	120	126	14.9607
CUUCAG	chr4:77053674-77053890(-)$1	216	12	18	12.2156
CUCCAG	chr22:36876701-36876912(-)$1	211	72	78	14.9607
CUCCAG	chr16:16235391-16235653(+)$1	262	141	147	14.9607
CUCCAG	chr6:160113651-160113928(-)$1	277	72	78	14.9607
CCCCAG	chr5:154194874-154195103(+)$1	229	118	124	11.3333
CUCCAG	chr15:91328154-91328390(+)$1	236	21	27	14.9607
CUGCAG	chr19:55741292-55741558(-)$1	266	83	89	12.9019
CUCCAG	chr19:36036696-36036920(+)$1	224	87	93	14.9607
CUGCAG	chr2:219140159-219140380(-)$1	221	114	120	12.9019
cugcag	chr7:99007663-99007881(+)$1	218	74	80	12.9019
CUCCAG	chr11:66011094-66011405(+)$1	311	66	72	14.9607
CUCCAG	chr22:38258905-38259124(+)$1	219	198	204	14.9607
CUCCAG	chr19:7992894-7993151(-)$1	257	148	154	14.9607
CUCCAG	chr16:88875890-88876122(-)$1	232	41	47	14.9607
cugcag	chr16:68345880-68346095(+)$1	215	113	119	12.9019
CCCCAG	chr11:64802265-64802479(+)$1	214	145	151	11.3333
CUGCAG	chr11:118925213-118925440(-)$1	227	121	127	12.9019
CUGCAG	chr16:2257006-2257211(+)$1	205	39	45	12.9019
CUCCAG	chr16:85839367-85839570(+)$1	203	144	150	14.9607
CCCCAG	chr6:44194902-44195104(+)$1	202	88	94	11.3333
CCCCAG	chr19:49120947-49121155(-)$1	208	143	149	11.3333
CUCCAG	chr18:46570293-46570545(-)$1	252	148	154	14.9607
CUCCAU	chr17:40994243-40994456(+)$1	213	32	38	11.1372
CUCCAU	chr15:34521932-34522187(+)$1	255	183	189	11.1372
CUCCAG	chr17:73016307-73016569(+)$1	262	248	254	14.9607
CUGCAG	chr1:11134246-11134468(-)$1	222	79	85	12.9019
CCCCAG	chr3:52741795-52742037(+)$1	242	92	98	11.3333
CUCCAU	chr17:40994262-40994493(+)$1	231	13	19	11.1372
CCCCAG	chr1:22172974-22173183(-)$1	209	85	91	11.3333
CUCCAU	chr3:48198983-48199227(-)$1	244	77	83	11.1372
CUGCAG	chr2:128698954-128699253(-)$1	299	18	24	12.9019
CUGCAG	chr19:18420566-18420771(-)$1	205	22	28	12.9019
CUCCAG	chr7:150711282-150711620(+)$1	338	117	123	14.9607
CUCCAG	chr13:46700796-46701010(-)$1	214	177	183	14.9607
CUUCAG	chr5:169435417-169435662(+)$1	245	39	45	12.2156
CUUCAG	chr16:81053664-81053955(+)$1	291	51	57	12.2156
CUGCAG	chr15:76222233-76222490(+)$1	257	68	74	12.9019
CUCCAG	chr10:35298984-35299247(-)$1	263	19	25	14.9607
CUCCAU	chr11:34121057-34121287(+)$1	230	156	162	11.1372
CCCCAG	chr1:160327943-160328170(+)$1	227	124	130	11.3333
CUCCAG	chr14:100563772-100563990(+)$1	218	39	45	14.9607
CUUCAG	chr3:184040624-184040828(+)$1	204	126	132	12.2156
CUCCAG	chr17:80013852-80014071(+)$1	219	110	116	14.9607

#otherMatches

#Struct PSSM
ccc[cc	chr19:12816204-12816448(-)$1	244	59	65	12.9019
::::ee	chr7:151074577-151074835(+)$1	258	93	99	14.9607
eeee22	chr22:41676941-41677154(-)$1	213	77	83	14.9607
deeeee	chr5:110463187-110463432(+)$1	245	126	132	11.1372
NNNNNF	chr22:38687501-38687768(-)$1	267	21	27	12.2156
mmmeee	chr4:79832149-79832357(+)$1	208	8	14	11.8235
CC{BBK	chr17:27075040-27075256(+)$1	216	8	14	12.9019
eeeeel	chr19:13064226-13064433(+)$1	207	120	126	14.9607
BKKEEE	chr4:77053674-77053890(-)$1	216	12	18	12.2156
:BB{DD	chr22:36876701-36876912(-)$1	211	72	78	14.9607
cc]ggg	chr16:16235391-16235653(+)$1	262	141	147	14.9607
####dd	chr6:160113651-160113928(-)$1	277	72	78	14.9607
qqqqqc	chr5:154194874-154195103(+)$1	229	118	124	11.3333
mmmmdd	chr15:91328154-91328390(+)$1	236	21	27	14.9607
ccc[cc	chr19:55741292-55741558(-)$1	266	83	89	12.9019
cccddd	chr19:36036696-36036920(+)$1	224	87	93	14.9607
ffffff	chr2:219140159-219140380(-)$1	221	114	120	12.9019
mmdddd	chr7:99007663-99007881(+)$1	218	74	80	12.9019
FFFF:c	chr11:66011094-66011405(+)$1	311	66	72	14.9607
eee22e	chr22:38258905-38259124(+)$1	219	198	204	14.9607
mmeeee	chr19:7992894-7993151(-)$1	257	148	154	14.9607
EEEE:=	chr16:88875890-88876122(-)$1	232	41	47	14.9607
qqqqqg	chr16:68345880-68346095(+)$1	215	113	119	12.9019
nnnnnc	chr11:64802265-64802479(+)$1	214	145	151	11.3333
oobb]c	chr11:118925213-118925440(-)$1	227	121	127	12.9019
eee[bb	chr16:2257006-2257211(+)$1	205	39	45	12.9019
b]cccd	chr16:85839367-85839570(+)$1	203	144	150	14.9607
ddccc2	chr6:44194902-44195104(+)$1	202	88	94	11.3333
mccc:f	chr19:49120947-49121155(-)$1	208	143	149	11.3333
mccc::	chr18:46570293-46570545(-)$1	252	148	154	14.9607
JJJJJJ	chr17:40994243-40994456(+)$1	213	32	38	11.1372
cc333d	chr15:34521932-34522187(+)$1	255	183	189	11.1372
YYDDDD	chr17:73016307-73016569(+)$1	262	248	254	14.9607
cccbbc	chr1:11134246-11134468(-)$1	222	79	85	12.9019
EEEEE:	chr3:52741795-52742037(+)$1	242	92	98	11.3333
::::::	chr17:40994262-40994493(+)$1	231	13	19	11.1372
oooccc	chr1:22172974-22173183(-)$1	209	85	91	11.3333
dddd%%	chr3:48198983-48199227(-)$1	244	77	83	11.1372
[a[eee	chr2:128698954-128699253(-)$1	299	18	24	12.9019
dddd22	chr19:18420566-18420771(-)$1	205	22	28	12.9019
PPPGGG	chr7:150711282-150711620(+)$1	338	117	123	14.9607
mmmmee	chr13:46700796-46701010(-)$1	214	177	183	14.9607
FFFFFF	chr5:169435417-169435662(+)$1	245	39	45	12.2156
gggggg	chr16:81053664-81053955(+)$1	291	51	57	12.2156
ehhhhh	chr15:76222233-76222490(+)$1	257	68	74	12.9019
PPPPPG	chr10:35298984-35299247(-)$1	263	19	25	14.9607
:dddd!	chr11:34121057-34121287(+)$1	230	156	162	11.1372
=22ggg	chr1:160327943-160328170(+)$1	227	124	130	11.3333
&&&&&e	chr14:100563772-100563990(+)$1	218	39	45	14.9607
gggg]b	chr3:184040624-184040828(+)$1	204	126	132	12.2156
dddd]b	chr17:80013852-80014071(+)$1	219	110	116	14.9607

#DB
(((.((	chr19:12816204-12816448(-)$1	1	59	65	12.9019
....((	chr7:151074577-151074835(+)$1	1	93	99	14.9607
))))..	chr22:41676941-41677154(-)$1	1	77	83	14.9607
((((((	chr5:110463187-110463432(+)$1	1	126	132	11.1372
.....(	chr22:38687501-38687768(-)$1	1	21	27	12.2156
...)))	chr4:79832149-79832357(+)$1	1	8	14	11.8235
((.((.	chr17:27075040-27075256(+)$1	1	8	14	12.9019
(((((.	chr19:13064226-13064433(+)$1	1	120	126	14.9607
(..(((	chr4:77053674-77053890(-)$1	1	12	18	12.2156
.((.((	chr22:36876701-36876912(-)$1	1	72	78	14.9607
)).)))	chr16:16235391-16235653(+)$1	1	141	147	14.9607
....((	chr6:160113651-160113928(-)$1	1	72	78	14.9607
.....)	chr5:154194874-154195103(+)$1	1	118	124	11.3333
....))	chr15:91328154-91328390(+)$1	1	21	27	14.9607
(((.((	chr19:55741292-55741558(-)$1	1	83	89	12.9019
))))))	chr19:36036696-36036920(+)$1	1	87	93	14.9607
((((((	chr2:219140159-219140380(-)$1	1	114	120	12.9019
..))))	chr7:99007663-99007881(+)$1	1	74	80	12.9019
((((.(	chr11:66011094-66011405(+)$1	1	66	72	14.9607
)))..)	chr22:38258905-38259124(+)$1	1	198	204	14.9607
..))))	chr19:7992894-7993151(-)$1	1	148	154	14.9607
((((.(	chr16:88875890-88876122(-)$1	1	41	47	14.9607
.....)	chr16:68345880-68346095(+)$1	1	113	119	12.9019
.....)	chr11:64802265-64802479(+)$1	1	145	151	11.3333
..)).)	chr11:118925213-118925440(-)$1	1	121	127	12.9019
(((.((	chr16:2257006-2257211(+)$1	1	39	45	12.9019
).))))	chr16:85839367-85839570(+)$1	1	144	150	14.9607
))))).	chr6:44194902-44195104(+)$1	1	88	94	11.3333
.))).(	chr19:49120947-49121155(-)$1	1	143	149	11.3333
.)))..	chr18:46570293-46570545(-)$1	1	148	154	14.9607
((((((	chr17:40994243-40994456(+)$1	1	32	38	11.1372
))...)	chr15:34521932-34522187(+)$1	1	183	189	11.1372
..))))	chr17:73016307-73016569(+)$1	1	248	254	14.9607
((((((	chr1:11134246-11134468(-)$1	1	79	85	12.9019
(((((.	chr3:52741795-52742037(+)$1	1	92	98	11.3333
......	chr17:40994262-40994493(+)$1	1	13	19	11.1372
...)))	chr1:22172974-22173183(-)$1	1	85	91	11.3333
((((..	chr3:48198983-48199227(-)$1	1	77	83	11.1372
.(.(((	chr2:128698954-128699253(-)$1	1	18	24	12.9019
))))..	chr19:18420566-18420771(-)$1	1	22	28	12.9019
...(((	chr7:150711282-150711620(+)$1	1	117	123	14.9607
....))	chr13:46700796-46701010(-)$1	1	177	183	14.9607
((((((	chr5:169435417-169435662(+)$1	1	39	45	12.2156
((((((	chr16:81053664-81053955(+)$1	1	51	57	12.2156
))))))	chr15:76222233-76222490(+)$1	1	68	74	12.9019
.....(	chr10:35298984-35299247(-)$1	1	19	25	14.9607
.((((.	chr11:34121057-34121287(+)$1	1	156	162	11.1372
)..)))	chr1:160327943-160328170(+)$1	1	124	130	11.3333
.....(	chr14:100563772-100563990(+)$1	1	39	45	14.9607
)))).)	chr3:184040624-184040828(+)$1	1	126	132	12.2156
)))).)	chr17:80013852-80014071(+)$1	1	110	116	14.9607

#PSSM
C : 0.96	c : 0.03	
U : 0.82	C : 0.13	u : 0.03	
C : 0.64	G : 0.19	U : 0.09	g : 0.03	A : 0.01	
C : 0.96	c : 0.03	
A : 0.96	a : 0.03	
G : 0.84	U : 0.11	g : 0.03	

#score	673.0980392156869
#seq	51
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_transcript_m3_run1.nuc.txt

#NT
CUGG	chr16:75611116-75611410(+)$1	294	16	20	11.9999
CUGG	chr12:6979136-6979374(+)$1	238	8	12	11.9999
CUGG	chr12:56553807-56554034(+)$1	227	121	125	11.9999
CUGG	chr6:26124526-26124779(+)$1	253	87	91	11.9999
CUGG	chr15:62170824-62171032(-)$1	208	12	16	11.9999
CUGG	chr11:62482632-62482893(-)$1	261	7	11	11.9999
CUGG	chr17:79803720-79803962(-)$1	242	127	131	11.9999
CUGG	chr7:5632669-5632906(+)$1	237	32	36	11.9999
CUGG	chr8:25246654-25246881(+)$1	227	61	65	11.9999
CUGG	chr16:70299368-70299607(-)$1	239	93	97	11.9999
CUGG	chr17:26900396-26900656(-)$1	260	216	220	11.9999
CUGG	chr12:56553948-56554199(+)$1	251	110	114	11.9999
CUGG	chr11:62393137-62393380(-)$1	243	50	54	11.9999
CUGG	chr7:75932217-75932492(+)$1	275	93	97	11.9999
CUGG	chr15:48626524-48626806(+)$1	282	160	164	11.9999
CUGG	chr9:127115726-127115971(-)$1	245	44	48	11.9999
CUGG	chr11:6639914-6640244(-)$1	330	24	28	11.9999
CUGG	chr19:18685596-18685820(+)$1	224	9	13	11.9999
CUGG	chr12:125399032-125399293(-)$1	261	176	180	11.9999
CUGG	chrX:47445915-47446155(+)$1	240	144	148	11.9999
CUGG	chr6:26199233-26199513(-)$1	280	195	199	11.9999
CUGG	chr6:30690289-30690522(+)$1	233	26	30	11.9999
CUGG	chr10:7830054-7830320(+)$1	266	50	54	11.9999
CUGG	chr17:80039528-80039731(-)$1	203	14	18	11.9999
CUGG	chr9:140136992-140137230(+)$1	238	11	15	11.9999
CUGG	chr11:77790588-77790867(-)$1	279	240	244	11.9999
CUGG	chrX:119005794-119006058(+)$1	264	5	9	11.9999
CUGG	chr17:39847029-39847269(+)$1	240	10	14	11.9999
CUGG	chr17:26900456-26900705(-)$1	249	4	8	11.9999
CUGG	chr17:36909435-36909685(+)$1	250	120	124	11.9999
CUGG	chr1:17764687-17764944(-)$1	257	102	106	11.9999
CUGG	chr12:50149317-50149551(+)$1	234	101	105	11.9999
CUGG	chr19:582413-582640(+)$1	227	19	23	11.9999
CUGG	chr6:33385160-33385418(-)$1	258	40	44	11.9999
CUGG	chr11:75282867-75283131(+)$1	264	45	49	11.9999
CUGG	chr19:34868307-34868545(+)$1	238	3	7	11.9999
CUGG	chr1:40839547-40839877(+)$1	330	147	151	11.9999
CUGG	chr16:70286599-70286838(-)$1	239	167	171	11.9999
CUGG	chr1:8931876-8932087(-)$1	211	78	82	11.9999
CUGG	chr12:6645560-6645791(+)$1	231	52	56	11.9999
CUGG	chr6:33258052-33258311(+)$1	259	53	57	11.9999
CUGG	chr17:79848491-79848759(-)$1	268	16	20	11.9999
CUGG	chr19:580306-580549(+)$1	243	0	4	11.9999
CUGG	chrX:47444576-47444805(+)$1	229	151	155	11.9999
CUGG	chr19:40329661-40329923(-)$1	262	107	111	11.9999
CUGG	chr2:55462504-55462749(+)$1	245	120	124	11.9999
CUGG	chr1:8923232-8923464(-)$1	232	39	43	11.9999
CUGG	chrX:48649528-48649754(+)$1	226	3	7	11.9999
CUGG	chr2:73461342-73461589(+)$1	247	69	73	11.9999
CUGG	chr6:27100912-27101174(+)$1	262	91	95	11.9999
CUGG	chr4:145037919-145038185(-)$1	266	123	127	11.9999
CUGG	chr17:57758172-57758390(+)$1	218	202	206	11.9999
CUGG	chr19:19010584-19010846(-)$1	262	212	216	11.9999
CUGG	chr11:61077687-61077933(-)$1	246	223	227	11.9999
CUGG	chr1:45478550-45478790(+)$1	240	76	80	11.9999
CUGG	chr19:42365103-42365351(+)$1	248	120	124	11.9999
CUGG	chr15:45007678-45008001(+)$1	323	17	21	11.9999
CUGG	chr1:54518583-54518981(-)$1	398	45	49	11.9999
CUGG	chr1:45478477-45478705(+)$1	228	12	16	11.9999
CUGG	chr15:72502587-72502807(-)$1	220	103	107	11.9999
CUGG	chrX:77369412-77369629(+)$1	217	4	8	11.9999
cugg	chr10:102120390-102120611(+)$1	221	34	38	11.9999
CUGG	chr6:26199798-26200046(+)$1	248	211	215	11.9999
CUGG	chr1:182356192-182356498(-)$1	306	1	5	11.9999
CUGG	chr22:22892390-22892634(-)$1	244	227	231	11.9999
CUGG	chr1:151239644-151239886(+)$1	242	115	119	11.9999
CUGG	chr1:43408828-43409078(-)$1	250	107	111	11.9999
CUGG	chr7:107557202-107557456(+)$1	254	50	54	11.9999
CUGG	chr19:2269423-2269650(+)$1	227	53	57	11.9999
CUGG	chr3:150263760-150264093(-)$1	333	45	49	11.9999
CUGG	chr16:30081247-30081450(+)$1	203	42	46	11.9999
CUGG	chr6:26033588-26033836(-)$1	248	44	48	11.9999
CUGG	chr6:43023607-43023846(-)$1	239	55	59	11.9999
CUGG	chr1:110558026-110558253(+)$1	227	5	9	11.9999
CUGG	chr19:49513647-49513924(+)$1	277	205	209	11.9999
CUGG	chr19:40883893-40884174(+)$1	281	9	13	11.9999
CUGG	chr17:78935427-78935655(+)$1	228	45	49	11.9999
CUGG	chr1:110946438-110946687(-)$1	249	56	60	11.9999
CUGG	chr16:30080554-30080797(+)$1	243	28	32	11.9999
CUGG	chr6:27860615-27860882(-)$1	267	19	23	11.9999
CUGG	chr7:127334789-127335094(+)$1	305	94	98	11.9999
CUGG	chr3:128889863-128890122(-)$1	259	103	107	11.9999
CUGG	chr2:63832312-63832559(+)$1	247	3	7	11.9999
CUGG	chr21:33040733-33040988(+)$1	255	114	118	11.9999
CUGG	chr17:26902338-26902586(-)$1	248	126	130	11.9999
CUGG	chr6:26204794-26205050(+)$1	256	82	86	11.9999
CUGG	chr6:31701884-31702121(-)$1	237	1	5	11.9999

#otherMatches

#Struct PSSM
::ff	chr3:10353622-10353854(-)$1	232	20	24	11.9999
DDMM	chr16:75611116-75611410(+)$1	294	16	20	11.9999
eeem	chr12:6979136-6979374(+)$1	238	8	12	11.9999
ee]b	chr12:56553807-56554034(+)$1	227	121	125	11.9999
FFFF	chr6:26124526-26124779(+)$1	253	87	91	11.9999
dd!!	chr15:62170824-62171032(-)$1	208	12	16	11.9999
mddd	chr11:62482632-62482893(-)$1	261	7	11	11.9999
a]bb	chr17:79803720-79803962(-)$1	242	127	131	11.9999
b]bb	chr7:5632669-5632906(+)$1	237	32	36	11.9999
$$ee	chr8:25246654-25246881(+)$1	227	61	65	11.9999
ffff	chr16:70299368-70299607(-)$1	239	93	97	11.9999
ppdd	chr17:26900396-26900656(-)$1	260	216	220	11.9999
44ii	chr12:56553948-56554199(+)$1	251	110	114	11.9999
KEEE	chr11:62393137-62393380(-)$1	243	50	54	11.9999
dddg	chr7:75932217-75932492(+)$1	275	93	97	11.9999
666f	chr15:48626524-48626806(+)$1	282	160	164	11.9999
lldd	chr9:127115726-127115971(-)$1	245	44	48	11.9999
:ddd	chr11:6639914-6640244(-)$1	330	24	28	11.9999
FFDD	chr19:18685596-18685820(+)$1	224	9	13	11.9999
cc]e	chr12:125399032-125399293(-)$1	261	176	180	11.9999
pppd	chrX:47445915-47446155(+)$1	240	144	148	11.9999
ddee	chr6:26199233-26199513(-)$1	280	195	199	11.9999
eeee	chr6:30690289-30690522(+)$1	233	26	30	11.9999
gggg	chr10:7830054-7830320(+)$1	266	50	54	11.9999
E::g	chr17:80039528-80039731(-)$1	203	14	18	11.9999
bbll	chr9:140136992-140137230(+)$1	238	11	15	11.9999
dqqq	chr11:77790588-77790867(-)$1	279	240	244	11.9999
GGCC	chrX:119005794-119006058(+)$1	264	5	9	11.9999
HEEE	chr17:39847029-39847269(+)$1	240	10	14	11.9999
:fff	chr17:26900456-26900705(-)$1	249	4	8	11.9999
ffff	chr17:36909435-36909685(+)$1	250	120	124	11.9999
cc]a	chr1:17764687-17764944(-)$1	257	102	106	11.9999
!!ee	chr12:50149317-50149551(+)$1	234	101	105	11.9999
a[==	chr19:582413-582640(+)$1	227	19	23	11.9999
::::	chr6:33385160-33385418(-)$1	258	40	44	11.9999
ffff	chr11:75282867-75283131(+)$1	264	45	49	11.9999
:III	chr19:34868307-34868545(+)$1	238	3	7	11.9999
====	chr1:40839547-40839877(+)$1	330	147	151	11.9999
hhhh	chr16:70286599-70286838(-)$1	239	167	171	11.9999
ooff	chr1:8931876-8932087(-)$1	211	78	82	11.9999
nbbc	chr12:6645560-6645791(+)$1	231	52	56	11.9999
pppp	chr6:33258052-33258311(+)$1	259	53	57	11.9999
GGGG	chr17:79848491-79848759(-)$1	268	16	20	11.9999
DDDD	chr19:580306-580549(+)$1	243	0	4	11.9999
deee	chrX:47444576-47444805(+)$1	229	151	155	11.9999
D:dd	chr19:40329661-40329923(-)$1	262	107	111	11.9999
dddd	chr2:55462504-55462749(+)$1	245	120	124	11.9999
eeee	chr1:8923232-8923464(-)$1	232	39	43	11.9999
EE{B	chrX:48649528-48649754(+)$1	226	3	7	11.9999
e[a[	chr2:73461342-73461589(+)$1	247	69	73	11.9999
nnnc	chr6:27100912-27101174(+)$1	262	91	95	11.9999
fmmm	chr4:145037919-145038185(-)$1	266	123	127	11.9999
d:BB	chr17:57758172-57758390(+)$1	218	202	206	11.9999
[bbg	chr19:19010584-19010846(-)$1	262	212	216	11.9999
::FF	chr11:61077687-61077933(-)$1	246	223	227	11.9999
ddde	chr1:45478550-45478790(+)$1	240	76	80	11.9999
dd22	chr19:42365103-42365351(+)$1	248	120	124	11.9999
e[dd	chr15:45007678-45008001(+)$1	323	17	21	11.9999
nnnn	chr1:54518583-54518981(-)$1	398	45	49	11.9999
EEEE	chr1:45478477-45478705(+)$1	228	12	16	11.9999
nncc	chr15:72502587-72502807(-)$1	220	103	107	11.9999
:ccc	chrX:77369412-77369629(+)$1	217	4	8	11.9999
mmcc	chr10:102120390-102120611(+)$1	221	34	38	11.9999
]fff	chr6:26199798-26200046(+)$1	248	211	215	11.9999
cc!!	chr1:182356192-182356498(-)$1	306	1	5	11.9999
CCDD	chr22:22892390-22892634(-)$1	244	227	231	11.9999
::ee	chr1:151239644-151239886(+)$1	242	115	119	11.9999
dd[c	chr1:43408828-43409078(-)$1	250	107	111	11.9999
HHHH	chr7:107557202-107557456(+)$1	254	50	54	11.9999
dccc	chr19:2269423-2269650(+)$1	227	53	57	11.9999
e!!c	chr3:150263760-150264093(-)$1	333	45	49	11.9999
gggd	chr16:30081247-30081450(+)$1	203	42	46	11.9999
ddde	chr6:26033588-26033836(-)$1	248	44	48	11.9999
EEKK	chr6:43023607-43023846(-)$1	239	55	59	11.9999
::BB	chr1:110558026-110558253(+)$1	227	5	9	11.9999
??BB	chr19:49513647-49513924(+)$1	277	205	209	11.9999
ppcc	chr19:40883893-40884174(+)$1	281	9	13	11.9999
HH{A	chr17:78935427-78935655(+)$1	228	45	49	11.9999
ffff	chr1:110946438-110946687(-)$1	249	56	60	11.9999
C{EE	chr16:30080554-30080797(+)$1	243	28	32	11.9999
EEEG	chr6:27860615-27860882(-)$1	267	19	23	11.9999
GGGG	chr7:127334789-127335094(+)$1	305	94	98	11.9999
cc]d	chr3:128889863-128890122(-)$1	259	103	107	11.9999
[fff	chr2:63832312-63832559(+)$1	247	3	7	11.9999
fff[	chr21:33040733-33040988(+)$1	255	114	118	11.9999
====	chr17:26902338-26902586(-)$1	248	126	130	11.9999
DDDA	chr6:26204794-26205050(+)$1	256	82	86	11.9999
eeee	chr6:31701884-31702121(-)$1	237	1	5	11.9999

#DB
..((	chr3:10353622-10353854(-)$1	1	20	24	11.9999
((..	chr16:75611116-75611410(+)$1	1	16	20	11.9999
(((.	chr12:6979136-6979374(+)$1	1	8	12	11.9999
)).)	chr12:56553807-56554034(+)$1	1	121	125	11.9999
((((	chr6:26124526-26124779(+)$1	1	87	91	11.9999
((..	chr15:62170824-62171032(-)$1	1	12	16	11.9999
.)))	chr11:62482632-62482893(-)$1	1	7	11	11.9999
).))	chr17:79803720-79803962(-)$1	1	127	131	11.9999
).))	chr7:5632669-5632906(+)$1	1	32	36	11.9999
..((	chr8:25246654-25246881(+)$1	1	61	65	11.9999
))))	chr16:70299368-70299607(-)$1	1	93	97	11.9999
..))	chr17:26900396-26900656(-)$1	1	216	220	11.9999
..))	chr12:56553948-56554199(+)$1	1	110	114	11.9999
.(((	chr11:62393137-62393380(-)$1	1	50	54	11.9999
))))	chr7:75932217-75932492(+)$1	1	93	97	11.9999
...)	chr15:48626524-48626806(+)$1	1	160	164	11.9999
..))	chr9:127115726-127115971(-)$1	1	44	48	11.9999
.(((	chr11:6639914-6640244(-)$1	1	24	28	11.9999
((((	chr19:18685596-18685820(+)$1	1	9	13	11.9999
)).)	chr12:125399032-125399293(-)$1	1	176	180	11.9999
...)	chrX:47445915-47446155(+)$1	1	144	148	11.9999
((((	chr6:26199233-26199513(-)$1	1	195	199	11.9999
))))	chr6:30690289-30690522(+)$1	1	26	30	11.9999
((((	chr10:7830054-7830320(+)$1	1	50	54	11.9999
(..(	chr17:80039528-80039731(-)$1	1	14	18	11.9999
((..	chr9:140136992-140137230(+)$1	1	11	15	11.9999
(...	chr11:77790588-77790867(-)$1	1	240	244	11.9999
((((	chrX:119005794-119006058(+)$1	1	5	9	11.9999
((((	chr17:39847029-39847269(+)$1	1	10	14	11.9999
.(((	chr17:26900456-26900705(-)$1	1	4	8	11.9999
((((	chr17:36909435-36909685(+)$1	1	120	124	11.9999
)).)	chr1:17764687-17764944(-)$1	1	102	106	11.9999
..((	chr12:50149317-50149551(+)$1	1	101	105	11.9999
(.((	chr19:582413-582640(+)$1	1	19	23	11.9999
....	chr6:33385160-33385418(-)$1	1	40	44	11.9999
))))	chr11:75282867-75283131(+)$1	1	45	49	11.9999
.(((	chr19:34868307-34868545(+)$1	1	3	7	11.9999
))))	chr1:40839547-40839877(+)$1	1	147	151	11.9999
((((	chr16:70286599-70286838(-)$1	1	167	171	11.9999
..))	chr1:8931876-8932087(-)$1	1	78	82	11.9999
.)))	chr12:6645560-6645791(+)$1	1	52	56	11.9999
....	chr6:33258052-33258311(+)$1	1	53	57	11.9999
((((	chr17:79848491-79848759(-)$1	1	16	20	11.9999
((((	chr19:580306-580549(+)$1	1	0	4	11.9999
)(((	chrX:47444576-47444805(+)$1	1	151	155	11.9999
(.((	chr19:40329661-40329923(-)$1	1	107	111	11.9999
((((	chr2:55462504-55462749(+)$1	1	120	124	11.9999
))))	chr1:8923232-8923464(-)$1	1	39	43	11.9999
((.(	chrX:48649528-48649754(+)$1	1	3	7	11.9999
(.(.	chr2:73461342-73461589(+)$1	1	69	73	11.9999
...)	chr6:27100912-27101174(+)$1	1	91	95	11.9999
(...	chr4:145037919-145038185(-)$1	1	123	127	11.9999
).))	chr17:57758172-57758390(+)$1	1	202	206	11.9999
.(((	chr19:19010584-19010846(-)$1	1	212	216	11.9999
..))	chr11:61077687-61077933(-)$1	1	223	227	11.9999
)))(	chr1:45478550-45478790(+)$1	1	76	80	11.9999
))..	chr19:42365103-42365351(+)$1	1	120	124	11.9999
(.((	chr15:45007678-45008001(+)$1	1	17	21	11.9999
....	chr1:54518583-54518981(-)$1	1	45	49	11.9999
((((	chr1:45478477-45478705(+)$1	1	12	16	11.9999
..))	chr15:72502587-72502807(-)$1	1	103	107	11.9999
.(((	chrX:77369412-77369629(+)$1	1	4	8	11.9999
..))	chr10:102120390-102120611(+)$1	1	34	38	11.9999
.)))	chr6:26199798-26200046(+)$1	1	211	215	11.9999
((..	chr1:182356192-182356498(-)$1	1	1	5	11.9999
))))	chr22:22892390-22892634(-)$1	1	227	231	11.9999
..((	chr1:151239644-151239886(+)$1	1	115	119	11.9999
((.(	chr1:43408828-43409078(-)$1	1	107	111	11.9999
((((	chr7:107557202-107557456(+)$1	1	50	54	11.9999
))))	chr19:2269423-2269650(+)$1	1	53	57	11.9999
(..(	chr3:150263760-150264093(-)$1	1	45	49	11.9999
))))	chr16:30081247-30081450(+)$1	1	42	46	11.9999
))))	chr6:26033588-26033836(-)$1	1	44	48	11.9999
((..	chr6:43023607-43023846(-)$1	1	55	59	11.9999
..((	chr1:110558026-110558253(+)$1	1	5	9	11.9999
..))	chr19:49513647-49513924(+)$1	1	205	209	11.9999
..))	chr19:40883893-40884174(+)$1	1	9	13	11.9999
((.(	chr17:78935427-78935655(+)$1	1	45	49	11.9999
((((	chr1:110946438-110946687(-)$1	1	56	60	11.9999
(.((	chr16:30080554-30080797(+)$1	1	28	32	11.9999
((((	chr6:27860615-27860882(-)$1	1	19	23	11.9999
((((	chr7:127334789-127335094(+)$1	1	94	98	11.9999
)).)	chr3:128889863-128890122(-)$1	1	103	107	11.9999
.(((	chr2:63832312-63832559(+)$1	1	3	7	11.9999
(((.	chr21:33040733-33040988(+)$1	1	114	118	11.9999
((((	chr17:26902338-26902586(-)$1	1	126	130	11.9999
((((	chr6:26204794-26205050(+)$1	1	82	86	11.9999
((((	chr6:31701884-31702121(-)$1	1	1	5	11.9999

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	

#score	1055.9999999999998
#seq	88
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_UTR_m3_run1.nuc.txt

#NT
cacaaagacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacacagcacacacacaaacacagcacacacaugcacacagcacacgcacacacagcacacacaugaacacagcacacagc	chr11:2152851-2153057(-)$1	206	51	200	447.0000
cacaaagacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacacagcacacacacaaacacagcacacacaugcacacagcacacgcacacacagcacacacaugaacacagcacacagc	chr11:2152817-2153020(-)$1	203	14	163	447.0000
cacaaagacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacacagcacacacacaaacacagcacacacaugcacacagcacacgcacacacagcacacacaugaacacagcacacagc	chr11:2152857-2153061(-)$1	204	55	204	447.0000
cacaaagacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacacagcacacacacaaacacagcacacacaugcacacagcacacgcacacacagcacacacaugaacacagcacacagc	chr11:2152824-2153031(-)$1	207	25	174	447.0000

#otherMatches

#Struct PSSM
::::::::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbpppppppbb:::::::::::::::cccooooooccc:::::bbmmmmbb:::::::BB:::::dddd%%%%%%bbnnnnnbb	chr11:2152847-2153051(-)$1	204	45	194	447.0000
::::::::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbpppppppbb:::::::::::::::cccooooooccc:::::bbmmmmbb:::::::BB:::::::::::::::bbnnnnnbb	chr11:2152851-2153057(-)$1	206	51	200	447.0000
::::::::::::BBNNNNNEEEEE:::::::::::::::::bbpppppppbb:::::::::::::bbpppppppbb:::::::::::::::cccooooooccc:::::bbmmmmbb::::::::::::::::::::::::bbnnnnnbb	chr11:2152817-2153020(-)$1	203	14	163	447.0000
::::::::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbpppppppbb:::::::::::::::cccooooooccc:::::bbmmmmbb:::::::BB::::::::::::::::::::::::	chr11:2152857-2153061(-)$1	204	55	204	447.0000
:::::::::::::::::::EEEEE:::::::::::::::::bbpppppppbb:::::::::::::bbpppppppbb:::::::::::::::cccooooooccc:::::bbmmmmbb::::::::::::::::::::::::bbnnnnnbb	chr11:2152824-2153031(-)$1	207	25	174	447.0000

#DB
............(((......))).................((.......)).............((.......))...............(((......))).....((....)).......)).....((((......((.....))	chr11:2152847-2153051(-)$1	1	45	194	447.0000
............(((......))).................((.......)).............((.......))...............(((......))).....((....)).......))...............((.....))	chr11:2152851-2153057(-)$1	1	51	200	447.0000
............((.....(((((.................((.......)).............((.......))...............(((......))).....((....))........................((.....))	chr11:2152817-2153020(-)$1	1	14	163	447.0000
............(((......))).................((.......)).............((.......))...............(((......))).....((....)).......))........................	chr11:2152857-2153061(-)$1	1	55	204	447.0000
...................(((((.................((.......)).............((.......))...............(((......))).....((....))........................((.....))	chr11:2152824-2153031(-)$1	1	25	174	447.0000

#PSSM
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	

#score	2235.0
#seq	5
#width	149
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_CDS_m1_run1.nuc.txt

#NT
aga	chr12:121783759-121784010(-)$1	251	18	21	9.0000
aga	chr12:124143901-124144158(+)$1	257	0	3	9.0000
AGA	chr2:96934821-96935110(+)$1	289	11	14	9.0000
AGA	chr9:123287192-123287466(-)$1	274	58	61	9.0000
AGA	chr2:216177027-216177307(+)$1	280	23	26	9.0000
aga	chr14:24614890-24615199(-)$1	309	163	166	9.0000
AGA	chr16:67178065-67178297(+)$1	232	0	3	9.0000
AGA	chr12:6687492-6687813(-)$1	321	99	102	9.0000
AGA	chr14:21967359-21967672(-)$1	313	77	80	9.0000
AGA	chr17:37883379-37883656(+)$1	277	123	126	9.0000
AGA	chr17:7481323-7481559(+)$1	236	12	15	9.0000
AGA	chr17:80050791-80051062(-)$1	271	97	100	9.0000
AGA	chr17:79663451-79663712(+)$1	261	8	11	9.0000
AGA	chr2:203964167-203964470(+)$1	303	45	48	9.0000
AGA	chr3:58520198-58520513(-)$1	315	30	33	9.0000
AGA	chr22:37407260-37407535(-)$1	275	42	45	9.0000
AGA	chr22:38209297-38209542(+)$1	245	14	17	9.0000
AGA	chr20:2819563-2819833(-)$1	270	37	40	9.0000
AGA	chr16:89971133-89971380(+)$1	247	5	8	9.0000
AGA	chr2:27258360-27258595(+)$1	235	31	34	9.0000
AGA	chr17:76115370-76115657(-)$1	287	195	198	9.0000
AGA	chr7:889114-889416(+)$1	302	62	65	9.0000
AGA	chr16:89724493-89724758(+)$1	265	46	49	9.0000
AGA	chr17:80007640-80007894(-)$1	254	66	69	9.0000
AGA	chr17:56082934-56083222(-)$1	288	3	6	9.0000
AGA	chr16:28847426-28847662(+)$1	236	106	109	9.0000
AGA	chr21:47966661-47966933(+)$1	272	19	22	9.0000
AGA	chr13:113980077-113980362(-)$1	285	199	202	9.0000
AGA	chr17:80397924-80398195(+)$1	271	146	149	9.0000
AGA	chr3:195801989-195802294(-)$1	305	71	74	9.0000
AGA	chr17:4692816-4693076(+)$1	260	23	26	9.0000
AGA	chr22:32003726-32004024(+)$1	298	79	82	9.0000
AGA	chr15:75646422-75646725(+)$1	303	2	5	9.0000
aga	chr20:44515676-44515971(-)$1	295	67	70	9.0000
AGA	chr20:2640897-2641179(-)$1	282	31	34	9.0000
AGA	chr17:7123741-7124002(+)$1	261	58	61	9.0000
AGA	chr17:79211180-79211444(-)$1	264	5	8	9.0000
aga	chr2:47637256-47637510(+)$1	254	5	8	9.0000

#otherMatches

#Struct PSSM
cc]	chr19:2227017-2227314(+)$1	297	48	51	9.0000
F::	chr12:121783759-121784010(-)$1	251	18	21	9.0000
:cc	chr12:124143901-124144158(+)$1	257	0	3	9.0000
$$$	chr2:96934821-96935110(+)$1	289	11	14	9.0000
nnn	chr9:123287192-123287466(-)$1	274	58	61	9.0000
oa]	chr2:216177027-216177307(+)$1	280	23	26	9.0000
:::	chr14:24614890-24615199(-)$1	309	163	166	9.0000
:DD	chr16:67178065-67178297(+)$1	232	0	3	9.0000
ppp	chr12:6687492-6687813(-)$1	321	99	102	9.0000
III	chr14:21967359-21967672(-)$1	313	77	80	9.0000
A{C	chr17:37883379-37883656(+)$1	277	123	126	9.0000
DD:	chr17:7481323-7481559(+)$1	236	12	15	9.0000
ddq	chr17:80050791-80051062(-)$1	271	97	100	9.0000
:::	chr17:79663451-79663712(+)$1	261	8	11	9.0000
G::	chr2:203964167-203964470(+)$1	303	45	48	9.0000
sss	chr3:58520198-58520513(-)$1	315	30	33	9.0000
eee	chr22:37407260-37407535(-)$1	275	42	45	9.0000
{BB	chr22:38209297-38209542(+)$1	245	14	17	9.0000
ggg	chr20:2819563-2819833(-)$1	270	37	40	9.0000
:::	chr16:89971133-89971380(+)$1	247	5	8	9.0000
ddd	chr2:27258360-27258595(+)$1	235	31	34	9.0000
CCC	chr17:76115370-76115657(-)$1	287	195	198	9.0000
JJJ	chr7:889114-889416(+)$1	302	62	65	9.0000
:EE	chr16:89724493-89724758(+)$1	265	46	49	9.0000
eee	chr17:80007640-80007894(-)$1	254	66	69	9.0000
:::	chr17:56082934-56083222(-)$1	288	3	6	9.0000
qqq	chr16:28847426-28847662(+)$1	236	106	109	9.0000
hhh	chr21:47966661-47966933(+)$1	272	19	22	9.0000
iii	chr13:113980077-113980362(-)$1	285	199	202	9.0000
::b	chr17:80397924-80398195(+)$1	271	146	149	9.0000
===	chr3:195801989-195802294(-)$1	305	71	74	9.0000
fdd	chr17:4692816-4693076(+)$1	260	23	26	9.0000
555	chr22:32003726-32004024(+)$1	298	79	82	9.0000
fff	chr15:75646422-75646725(+)$1	303	2	5	9.0000
ccc	chr20:44515676-44515971(-)$1	295	67	70	9.0000
sss	chr20:2640897-2641179(-)$1	282	31	34	9.0000
fff	chr17:7123741-7124002(+)$1	261	58	61	9.0000
===	chr17:79211180-79211444(-)$1	264	5	8	9.0000
C{F	chr2:47637256-47637510(+)$1	254	5	8	9.0000

#DB
)).	chr19:2227017-2227314(+)$1	1	48	51	9.0000
(..	chr12:121783759-121784010(-)$1	1	18	21	9.0000
.((	chr12:124143901-124144158(+)$1	1	0	3	9.0000
...	chr2:96934821-96935110(+)$1	1	11	14	9.0000
...	chr9:123287192-123287466(-)$1	1	58	61	9.0000
.).	chr2:216177027-216177307(+)$1	1	23	26	9.0000
...	chr14:24614890-24615199(-)$1	1	163	166	9.0000
.((	chr16:67178065-67178297(+)$1	1	0	3	9.0000
...	chr12:6687492-6687813(-)$1	1	99	102	9.0000
(((	chr14:21967359-21967672(-)$1	1	77	80	9.0000
(.(	chr17:37883379-37883656(+)$1	1	123	126	9.0000
((.	chr17:7481323-7481559(+)$1	1	12	15	9.0000
((.	chr17:80050791-80051062(-)$1	1	97	100	9.0000
...	chr17:79663451-79663712(+)$1	1	8	11	9.0000
(..	chr2:203964167-203964470(+)$1	1	45	48	9.0000
...	chr3:58520198-58520513(-)$1	1	30	33	9.0000
(((	chr22:37407260-37407535(-)$1	1	42	45	9.0000
.((	chr22:38209297-38209542(+)$1	1	14	17	9.0000
(((	chr20:2819563-2819833(-)$1	1	37	40	9.0000
...	chr16:89971133-89971380(+)$1	1	5	8	9.0000
)))	chr2:27258360-27258595(+)$1	1	31	34	9.0000
)))	chr17:76115370-76115657(-)$1	1	195	198	9.0000
(((	chr7:889114-889416(+)$1	1	62	65	9.0000
.((	chr16:89724493-89724758(+)$1	1	46	49	9.0000
)))	chr17:80007640-80007894(-)$1	1	66	69	9.0000
...	chr17:56082934-56083222(-)$1	1	3	6	9.0000
...	chr16:28847426-28847662(+)$1	1	106	109	9.0000
(((	chr21:47966661-47966933(+)$1	1	19	22	9.0000
(((	chr13:113980077-113980362(-)$1	1	199	202	9.0000
..(	chr17:80397924-80398195(+)$1	1	146	149	9.0000
)))	chr3:195801989-195802294(-)$1	1	71	74	9.0000
(((	chr17:4692816-4693076(+)$1	1	23	26	9.0000
...	chr22:32003726-32004024(+)$1	1	79	82	9.0000
(((	chr15:75646422-75646725(+)$1	1	2	5	9.0000
(((	chr20:44515676-44515971(-)$1	1	67	70	9.0000
...	chr20:2640897-2641179(-)$1	1	31	34	9.0000
(((	chr17:7123741-7124002(+)$1	1	58	61	9.0000
(((	chr17:79211180-79211444(-)$1	1	5	8	9.0000
(.(	chr2:47637256-47637510(+)$1	1	5	8	9.0000

#PSSM
A : 0.87	a : 0.12	
G : 0.87	g : 0.12	
A : 0.87	a : 0.12	

#score	351.00000000000006
#seq	39
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_CDS_m3_run1.nuc.txt

#NT
AGGGCUUCUCUGUGGAGAAAUCCGAAAAGCAUAUGUAGAAUUUGUCAAUGUCAGCAAAUGUCCACUUACUGGAUUGAAGGUUGUUUCUAAACGUCCAGAGUUCUUUACUUUCGGUGGUAAUACUGCUGUUCUAACACCACUAAGUCCCUCAGCUUCUGAGAAUUGUAGUGCUUACAAGACUGUUGUGACAGAUGCUACCUCUGUGUGUACAGCACUCAUAUCAUCAGCUUCUUCUGUAGACUUUGGCAUUGGCACAGGAAGUCAACCAGAGGUGAUUCCUGUUCCCCUUCCUGACACUGUUCUUCUACCCGGAGCCUCAGUGCAGCUGCCAAU	chr18:29437507-29437935(-)$1	428	13	346	406.5000

#otherMatches

#Struct PSSM
ddddCCCKKJJJJJJJJJJJJGGGGGGGNNNNNFFFFFF{BB{BBMMMMEEEEE::::HHHHHHHH{BB{GGGGGGGDDDDOOOOOOBB{FFFFFF:::ddddmmmmdddd:ddddqqqqqqqqdddd::::::FFFFFF}BB~~~~DDDD?????GGGGGGGZZZBB}HHHHHHHH::::cccmmmmccc:::::::::::cccoooooocccEEEEE~~~~BB}BBFFFFFF~~~~GGGGGGG:::::::::::::::::::::ffffff!!ddddxxxxxxxxxxxxxxxdddd22ffffff::::::::::JJJJJJJJJJJJYYCCC:	chr3:33877442-33877859(+)$1	417	82	415	406.5000
fffflllffffffffffff::::CCCDDDD:::::::::ffffffqqqqqqqqffffffeeeeennnnneeeee:ffffff"""ddddqqqqqqqqdddd666666ffffffGGGGGGGMMMMFFFFFFMMMMDDDDeeeee$$$$$eeeeellleeeee55555eeeee::eeeeennnnneeeeeeeeeepppppppeeeeeDDDDFFFFFF~~~~GGGGGGG}DDDD}CCC:::::::FFFFFF:::bb[ggggggg[ccc[bblllbbcccggggggg]bb::ccc!!ffffff[ffffff####ccc[ccc[bb[bb[ffffffmmmm	chr18:29437507-29437935(-)$1	428	13	346	406.5000

#DB
))))(((..(((((((((((((((((((.....((((((.((.((....(((((....((((((((.((.(((((((((((......((.((((((...((((....)))).((((........))))......)))))).))....)))).....)))))))...)).))))))))....(((....)))...........(((......))))))))....)).))))))))....))))))).....................((((((..((((...............))))..))))))..........))))))))))))..))).	chr3:33877442-33877859(+)$1	1	82	415	406.5000
((((...))))))))))))....(((((((.........((((((........))))))(((((.....))))).((((((...((((........))))......))))))(((((((....((((((....(((((((((.....(((((...))))).....)))))..(((((.....)))))(((((.......)))))))))))))))....))))))).)))).))).......((((((...((.(((((((.(((.((...)))))))))))).))..(((..((((((.((((((....(((.(((.((.((.((((((....	chr18:29437507-29437935(-)$1	1	13	346	406.5000

#PSSM
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
C : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
U : 1.00	

#score	813.0
#seq	2
#width	333
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_transcript_m2_run1.nuc.txt

#NT
CCUG	chr16:778878-779142(+)$1	264	6	10	11.9999
CCUG	chr22:23617711-23617945(+)$1	234	37	41	11.9999
CCUG	chr16:85652983-85653222(+)$1	239	88	92	11.9999
CCUG	chr11:64011399-64011662(+)$1	263	4	8	11.9999
ccug	chr6:119182443-119182740(-)$1	297	29	33	11.9999
CCUG	chr19:2270086-2270383(+)$1	297	280	284	11.9999
CCUG	chr11:67817869-67818147(+)$1	278	124	128	11.9999
CCUG	chr11:62651631-62651898(+)$1	267	254	258	11.9999
CCUG	chr4:78078360-78078621(+)$1	261	154	158	11.9999
ccug	chr20:62335242-62335624(-)$1	382	40	44	11.9999
CCUG	chr15:69110068-69110341(-)$1	273	43	47	11.9999
CCUG	chr19:10406926-10407198(+)$1	272	12	16	11.9999
CCUG	chr19:1878329-1878581(-)$1	252	18	22	11.9999
CCUG	chr11:567035-567296(-)$1	261	80	84	11.9999
CCUG	chr16:88851133-88851378(-)$1	245	32	36	11.9999
CCUG	chr11:612016-612303(+)$1	287	99	103	11.9999
CCUG	chr6:26199379-26199608(-)$1	229	215	219	11.9999
CCUG	chr3:169482603-169482854(-)$1	251	23	27	11.9999
CCUG	chr21:46847608-46847868(+)$1	260	85	89	11.9999
CCUG	chr16:85660258-85660502(+)$1	244	61	65	11.9999
CCUG	chr6:43745805-43746076(+)$1	271	142	146	11.9999
CCUG	chr19:49606869-49607108(+)$1	239	222	226	11.9999
CCUG	chr11:294550-294809(+)$1	259	64	68	11.9999
CCUG	chr19:2270329-2270593(+)$1	264	37	41	11.9999
CCUG	chr17:56408983-56409226(-)$1	243	6	10	11.9999
CCUG	chr19:34288080-34288352(+)$1	272	16	20	11.9999
CCUG	chr22:20127684-20127945(+)$1	261	143	147	11.9999
CCUG	chr15:60723751-60724006(-)$1	255	75	79	11.9999
CCUG	chr5:176759556-176759828(-)$1	272	10	14	11.9999
CCUG	chr13:92000342-92000642(+)$1	300	150	154	11.9999
ccug	chr12:1819441-1819713(+)$1	272	244	248	11.9999
CCUg	chr2:97535043-97535283(-)$1	240	51	55	11.9999
CCUG	chr17:46702817-46703053(-)$1	236	166	170	11.9999
ccug	chr7:152355447-152355762(-)$1	315	247	251	11.9999
CCUG	chr22:50030879-50031134(-)$1	255	30	34	11.9999
CCUG	chr19:1408695-1408928(+)$1	233	44	48	11.9999
CCUG	chr20:62331536-62331800(-)$1	264	39	43	11.9999
CCUG	chr19:1409314-1409573(+)$1	259	70	74	11.9999
CCUG	chr2:220403259-220403545(+)$1	286	47	51	11.9999
CCUG	chr16:85627764-85628007(+)$1	243	37	41	11.9999
CCUG	chr12:133138837-133139112(+)$1	275	5	9	11.9999
CCUG	chr6:26123583-26123833(-)$1	250	0	4	11.9999
ccug	chr7:23490172-23490464(-)$1	292	12	16	11.9999
CCUG	chr1:2164883-2165129(+)$1	246	1	5	11.9999
CCUG	chr19:10406731-10406966(+)$1	235	115	119	11.9999
ccug	chr3:23903262-23903550(+)$1	288	230	234	11.9999
CCUG	chr1:184659665-184659888(-)$1	223	182	186	11.9999
CCUG	chr22:50036374-50036609(-)$1	235	30	34	11.9999
CCUG	chr17:80054450-80054720(-)$1	270	17	21	11.9999
CCUG	chr19:1407881-1408153(+)$1	272	80	84	11.9999
CCUG	chr1:2162321-2162572(+)$1	251	123	127	11.9999
CCUG	chr22:50049991-50050225(-)$1	234	7	11	11.9999
ccug	chr2:145274962-145275207(-)$1	245	138	142	11.9999
CCUG	chr22:19946483-19946749(+)$1	266	167	171	11.9999
CCUG	chr22:49963941-49964169(-)$1	228	33	37	11.9999
CCUG	chr13:92001172-92001435(+)$1	263	134	138	11.9999
CCUG	chr7:934872-935120(+)$1	248	49	53	11.9999
CCUG	chr17:8062487-8062726(-)$1	239	12	16	11.9999
CCUG	chr5:136984418-136984629(-)$1	211	153	157	11.9999
CCUG	chr22:19957805-19958071(-)$1	266	106	110	11.9999
CCUG	chr16:587351-587585(+)$1	234	31	35	11.9999
CCUG	chrX:153195388-153195773(-)$1	385	54	58	11.9999
CCUG	chr19:49607690-49607981(+)$1	291	65	69	11.9999
CCUG	chr4:1799491-1799769(+)$1	278	65	69	11.9999
CCUG	chr1:109642856-109643060(+)$1	204	108	112	11.9999
CCUG	chr4:1239088-1239321(-)$1	233	13	17	11.9999
CCUG	chr3:48227208-48227476(-)$1	268	256	260	11.9999
CCUG	chr19:45570093-45570362(+)$1	269	84	88	11.9999
ccug	chr16:89000950-89001219(-)$1	269	26	30	11.9999
CCUG	chr17:37009226-37009434(-)$1	208	48	52	11.9999
CCUG	chr3:128210621-128210853(+)$1	232	13	17	11.9999
CCUG	chr1:1181513-1181763(-)$1	250	75	79	11.9999
CCUG	chr3:196661290-196661575(+)$1	285	76	80	11.9999
CCUG	chr1:2183204-2183440(+)$1	236	80	84	11.9999
CCUG	chr21:45223340-45223615(+)$1	275	176	180	11.9999
CCUG	chr20:35483253-35483549(-)$1	296	26	30	11.9999
ccug	chr19:41807827-41808120(+)$1	293	40	44	11.9999
CCUG	chr8:145736620-145736859(-)$1	239	0	4	11.9999
CCUG	chr11:2004111-2004373(+)$1	262	77	81	11.9999
CCUG	chr5:179248860-179249122(+)$1	262	17	21	11.9999
CCUG	chr17:56408940-56409183(-)$1	243	19	23	11.9999
ccug	chr1:22067432-22067709(-)$1	277	42	46	11.9999
CCUG	chr17:76109122-76109396(-)$1	274	13	17	11.9999
CCUG	chr4:1238594-1238836(-)$1	242	59	63	11.9999
CCUG	chr20:31172459-31172781(-)$1	322	253	257	11.9999
ccug	chr1:76224578-76224809(+)$1	231	8	12	11.9999

#otherMatches

#Struct PSSM
GBB}	chr16:85677947-85678232(+)$1	285	66	70	11.9999
HHHH	chr16:778878-779142(+)$1	264	6	10	11.9999
5555	chr22:23617711-23617945(+)$1	234	37	41	11.9999
ddd[	chr16:85652983-85653222(+)$1	239	88	92	11.9999
EECC	chr11:64011399-64011662(+)$1	263	4	8	11.9999
ffff	chr6:119182443-119182740(-)$1	297	29	33	11.9999
J___	chr19:2270086-2270383(+)$1	297	280	284	11.9999
c!!d	chr11:67817869-67818147(+)$1	278	124	128	11.9999
cc::	chr11:62651631-62651898(+)$1	267	254	258	11.9999
bb::	chr4:78078360-78078621(+)$1	261	154	158	11.9999
pppp	chr20:62335242-62335624(-)$1	382	40	44	11.9999
dddd	chr15:69110068-69110341(-)$1	273	43	47	11.9999
"""d	chr19:10406926-10407198(+)$1	272	12	16	11.9999
HHHH	chr19:1878329-1878581(-)$1	252	18	22	11.9999
b22c	chr11:567035-567296(-)$1	261	80	84	11.9999
bboo	chr16:88851133-88851378(-)$1	245	32	36	11.9999
!!hh	chr11:612016-612303(+)$1	287	99	103	11.9999
BBCC	chr6:26199379-26199608(-)$1	229	215	219	11.9999
E::J	chr3:169482603-169482854(-)$1	251	23	27	11.9999
ddd!	chr21:46847608-46847868(+)$1	260	85	89	11.9999
ffll	chr16:85660258-85660502(+)$1	244	61	65	11.9999
cccd	chr6:43745805-43746076(+)$1	271	142	146	11.9999
YYEE	chr19:49606869-49607108(+)$1	239	222	226	11.9999
IINN	chr11:294550-294809(+)$1	259	64	68	11.9999
EEEE	chr19:2270329-2270593(+)$1	264	37	41	11.9999
hhll	chr17:56408983-56409226(-)$1	243	6	10	11.9999
ee!!	chr19:34288080-34288352(+)$1	272	16	20	11.9999
eee4	chr22:20127684-20127945(+)$1	261	143	147	11.9999
a]gg	chr15:60723751-60724006(-)$1	255	75	79	11.9999
bb!!	chr5:176759556-176759828(-)$1	272	10	14	11.9999
gggg	chr13:92000342-92000642(+)$1	300	150	154	11.9999
ZZZA	chr12:1819441-1819713(+)$1	272	244	248	11.9999
ggg]	chr2:97535043-97535283(-)$1	240	51	55	11.9999
dddb	chr17:46702817-46703053(-)$1	236	166	170	11.9999
EEEE	chr7:152355447-152355762(-)$1	315	247	251	11.9999
CHHH	chr22:50030879-50031134(-)$1	255	30	34	11.9999
HHHH	chr19:1408695-1408928(+)$1	233	44	48	11.9999
bbpp	chr20:62331536-62331800(-)$1	264	39	43	11.9999
]bb]	chr19:1409314-1409573(+)$1	259	70	74	11.9999
EEE{	chr2:220403259-220403545(+)$1	286	47	51	11.9999
ffff	chr16:85627764-85628007(+)$1	243	37	41	11.9999
IIII	chr12:133138837-133139112(+)$1	275	5	9	11.9999
:::E	chr6:26123583-26123833(-)$1	250	0	4	11.9999
DDDD	chr7:23490172-23490464(-)$1	292	12	16	11.9999
ffff	chr1:2164883-2165129(+)$1	246	1	5	11.9999
gggg	chr19:10406731-10406966(+)$1	235	115	119	11.9999
ssss	chr3:23903262-23903550(+)$1	288	230	234	11.9999
g!!c	chr1:184659665-184659888(-)$1	223	182	186	11.9999
iiii	chr22:50036374-50036609(-)$1	235	30	34	11.9999
ffff	chr17:80054450-80054720(-)$1	270	17	21	11.9999
ddnn	chr19:1407881-1408153(+)$1	272	80	84	11.9999
cc[c	chr1:2162321-2162572(+)$1	251	123	127	11.9999
IIII	chr22:50049991-50050225(-)$1	234	7	11	11.9999
FFFY	chr2:145274962-145275207(-)$1	245	138	142	11.9999
ddii	chr22:19946483-19946749(+)$1	266	167	171	11.9999
DDDc	chr22:49963941-49964169(-)$1	228	33	37	11.9999
eee2	chr13:92001172-92001435(+)$1	263	134	138	11.9999
eeen	chr7:934872-935120(+)$1	248	49	53	11.9999
QQJJ	chr17:8062487-8062726(-)$1	239	12	16	11.9999
obb]	chr5:136984418-136984629(-)$1	211	153	157	11.9999
HHHd	chr22:19957805-19958071(-)$1	266	106	110	11.9999
cc[a	chr16:587351-587585(+)$1	234	31	35	11.9999
iiii	chrX:153195388-153195773(-)$1	385	54	58	11.9999
!bb[	chr19:49607690-49607981(+)$1	291	65	69	11.9999
ffff	chr4:1799491-1799769(+)$1	278	65	69	11.9999
abbd	chr1:109642856-109643060(+)$1	204	108	112	11.9999
BKKG	chr4:1239088-1239321(-)$1	233	13	17	11.9999
CC~~	chr3:48227208-48227476(-)$1	268	256	260	11.9999
ff55	chr19:45570093-45570362(+)$1	269	84	88	11.9999
#bb[	chr16:89000950-89001219(-)$1	269	26	30	11.9999
>>>=	chr17:37009226-37009434(-)$1	208	48	52	11.9999
:::f	chr3:128210621-128210853(+)$1	232	13	17	11.9999
eeee	chr1:1181513-1181763(-)$1	250	75	79	11.9999
ffff	chr3:196661290-196661575(+)$1	285	76	80	11.9999
::::	chr1:2183204-2183440(+)$1	236	80	84	11.9999
HHHH	chr21:45223340-45223615(+)$1	275	176	180	11.9999
cc[a	chr20:35483253-35483549(-)$1	296	26	30	11.9999
HHHL	chr19:41807827-41808120(+)$1	293	40	44	11.9999
:::h	chr8:145736620-145736859(-)$1	239	0	4	11.9999
dd:b	chr11:2004111-2004373(+)$1	262	77	81	11.9999
bbII	chr5:179248860-179249122(+)$1	262	17	21	11.9999
eemm	chr17:56408940-56409183(-)$1	243	19	23	11.9999
iiii	chr1:22067432-22067709(-)$1	277	42	46	11.9999
ffff	chr17:76109122-76109396(-)$1	274	13	17	11.9999
gg::	chr4:1238594-1238836(-)$1	242	59	63	11.9999
YYDD	chr20:31172459-31172781(-)$1	322	253	257	11.9999
meee	chr1:76224578-76224809(+)$1	231	8	12	11.9999

#DB
))).	chr16:85677947-85678232(+)$1	1	66	70	11.9999
((((	chr16:778878-779142(+)$1	1	6	10	11.9999
....	chr22:23617711-23617945(+)$1	1	37	41	11.9999
(((.	chr16:85652983-85653222(+)$1	1	88	92	11.9999
((((	chr11:64011399-64011662(+)$1	1	4	8	11.9999
))))	chr6:119182443-119182740(-)$1	1	29	33	11.9999
)...	chr19:2270086-2270383(+)$1	1	280	284	11.9999
(..(	chr11:67817869-67818147(+)$1	1	124	128	11.9999
))..	chr11:62651631-62651898(+)$1	1	254	258	11.9999
))..	chr4:78078360-78078621(+)$1	1	154	158	11.9999
....	chr20:62335242-62335624(-)$1	1	40	44	11.9999
((((	chr15:69110068-69110341(-)$1	1	43	47	11.9999
...(	chr19:10406926-10407198(+)$1	1	12	16	11.9999
((((	chr19:1878329-1878581(-)$1	1	18	22	11.9999
)..)	chr11:567035-567296(-)$1	1	80	84	11.9999
((..	chr16:88851133-88851378(-)$1	1	32	36	11.9999
..((	chr11:612016-612303(+)$1	1	99	103	11.9999
))))	chr6:26199379-26199608(-)$1	1	215	219	11.9999
(..(	chr3:169482603-169482854(-)$1	1	23	27	11.9999
(((.	chr21:46847608-46847868(+)$1	1	85	89	11.9999
((..	chr16:85660258-85660502(+)$1	1	61	65	11.9999
)))(	chr6:43745805-43746076(+)$1	1	142	146	11.9999
..))	chr19:49606869-49607108(+)$1	1	222	226	11.9999
((..	chr11:294550-294809(+)$1	1	64	68	11.9999
((((	chr19:2270329-2270593(+)$1	1	37	41	11.9999
((..	chr17:56408983-56409226(-)$1	1	6	10	11.9999
((..	chr19:34288080-34288352(+)$1	1	16	20	11.9999
))).	chr22:20127684-20127945(+)$1	1	143	147	11.9999
).))	chr15:60723751-60724006(-)$1	1	75	79	11.9999
((..	chr5:176759556-176759828(-)$1	1	10	14	11.9999
))))	chr13:92000342-92000642(+)$1	1	150	154	11.9999
...)	chr12:1819441-1819713(+)$1	1	244	248	11.9999
))).	chr2:97535043-97535283(-)$1	1	51	55	11.9999
)))(	chr17:46702817-46703053(-)$1	1	166	170	11.9999
))))	chr7:152355447-152355762(-)$1	1	247	251	11.9999
((((	chr22:50030879-50031134(-)$1	1	30	34	11.9999
((((	chr19:1408695-1408928(+)$1	1	44	48	11.9999
((..	chr20:62331536-62331800(-)$1	1	39	43	11.9999
.)).	chr19:1409314-1409573(+)$1	1	70	74	11.9999
(((.	chr2:220403259-220403545(+)$1	1	47	51	11.9999
))))	chr16:85627764-85628007(+)$1	1	37	41	11.9999
((((	chr12:133138837-133139112(+)$1	1	5	9	11.9999
...(	chr6:26123583-26123833(-)$1	1	0	4	11.9999
((((	chr7:23490172-23490464(-)$1	1	12	16	11.9999
((((	chr1:2164883-2165129(+)$1	1	1	5	11.9999
))))	chr19:10406731-10406966(+)$1	1	115	119	11.9999
....	chr3:23903262-23903550(+)$1	1	230	234	11.9999
(..(	chr1:184659665-184659888(-)$1	1	182	186	11.9999
((((	chr22:50036374-50036609(-)$1	1	30	34	11.9999
((((	chr17:80054450-80054720(-)$1	1	17	21	11.9999
((..	chr19:1407881-1408153(+)$1	1	80	84	11.9999
((.(	chr1:2162321-2162572(+)$1	1	123	127	11.9999
((((	chr22:50049991-50050225(-)$1	1	7	11	11.9999
))).	chr2:145274962-145275207(-)$1	1	138	142	11.9999
))))	chr22:19946483-19946749(+)$1	1	167	171	11.9999
((((	chr22:49963941-49964169(-)$1	1	33	37	11.9999
))).	chr13:92001172-92001435(+)$1	1	134	138	11.9999
(((.	chr7:934872-935120(+)$1	1	49	53	11.9999
..((	chr17:8062487-8062726(-)$1	1	12	16	11.9999
.)).	chr5:136984418-136984629(-)$1	1	153	157	11.9999
((((	chr22:19957805-19958071(-)$1	1	106	110	11.9999
((.(	chr16:587351-587585(+)$1	1	31	35	11.9999
))))	chrX:153195388-153195773(-)$1	1	54	58	11.9999
.((.	chr19:49607690-49607981(+)$1	1	65	69	11.9999
))))	chr4:1799491-1799769(+)$1	1	65	69	11.9999
))))	chr1:109642856-109643060(+)$1	1	108	112	11.9999
(..(	chr4:1239088-1239321(-)$1	1	13	17	11.9999
))..	chr3:48227208-48227476(-)$1	1	256	260	11.9999
))..	chr19:45570093-45570362(+)$1	1	84	88	11.9999
.((.	chr16:89000950-89001219(-)$1	1	26	30	11.9999
...)	chr17:37009226-37009434(-)$1	1	48	52	11.9999
...(	chr3:128210621-128210853(+)$1	1	13	17	11.9999
((((	chr1:1181513-1181763(-)$1	1	75	79	11.9999
((((	chr3:196661290-196661575(+)$1	1	76	80	11.9999
....	chr1:2183204-2183440(+)$1	1	80	84	11.9999
))))	chr21:45223340-45223615(+)$1	1	176	180	11.9999
((.(	chr20:35483253-35483549(-)$1	1	26	30	11.9999
(((.	chr19:41807827-41808120(+)$1	1	40	44	11.9999
...(	chr8:145736620-145736859(-)$1	1	0	4	11.9999
)).(	chr11:2004111-2004373(+)$1	1	77	81	11.9999
))((	chr5:179248860-179249122(+)$1	1	17	21	11.9999
((..	chr17:56408940-56409183(-)$1	1	19	23	11.9999
))))	chr1:22067432-22067709(-)$1	1	42	46	11.9999
((((	chr17:76109122-76109396(-)$1	1	13	17	11.9999
))..	chr4:1238594-1238836(-)$1	1	59	63	11.9999
..))	chr20:31172459-31172781(-)$1	1	253	257	11.9999
.)))	chr1:76224578-76224809(+)$1	1	8	12	11.9999

#PSSM
C : 0.86	c : 0.13	
C : 0.86	c : 0.13	
U : 0.86	u : 0.13	
G : 0.85	g : 0.14	

#score	1043.9999999999998
#seq	87
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_UTR_m1_run1.nuc.txt

#NT
GGGAGGAGGU	chr22:45622638-45622896(-)$1	258	121	131	17.8030
GGGAGGGGGA	chr8:145067379-145067649(+)$1	270	137	147	21.9696
GGGAGGGGCC	chr19:18547930-18548214(-)$1	284	138	148	18.7121
GGAAGGGGGC	chr8:71314176-71314432(-)$1	256	62	72	18.1060
GGGAGGGGGU	chr7:5569355-5569631(-)$1	276	124	134	22.0454
GGGUGGGGGC	chr9:139904715-139905014(-)$1	299	146	156	18.7878
GGGAGGAGGG	chr16:4744554-4744867(+)$1	313	218	228	18.9393
gggagggggc	chr2:242447556-242447840(-)$1	284	20	30	22.6515
GGGAGGGAGG	chr16:29821948-29822203(+)$1	255	54	64	18.6363
cggaggggga	chr11:18034123-18034463(-)$1	340	107	117	17.2727
GGGAGGAGGG	chr17:36955988-36956261(-)$1	273	255	265	18.9393
AGGAGGGGGC	chr20:36146340-36146603(-)$1	263	44	54	18.0303
GGGCGGGGGC	chr13:111357955-111358243(-)$1	288	51	61	18.7121
GGGUGGGGGG	chr19:58991263-58991524(-)$1	261	234	244	19.3181
GGGCGGGGGA	chr7:150819907-150820183(+)$1	276	257	267	18.0303
GGGUGGGGGC	chr20:62271934-62272200(-)$1	266	37	47	18.7878
GGGAGGGGAG	chr2:220151304-220151552(+)$1	248	193	203	19.2424
GGGAGAGGGG	chr17:76818900-76819140(-)$1	240	132	142	19.0151
gggagggggg	chr6:33588884-33589209(+)$1	325	149	159	23.1818
GGGAGAGGGG	chr22:25005474-25005716(+)$1	242	182	192	19.0151
GGGAGAGGGA	chr19:56825772-56826085(-)$1	313	105	115	17.8030
GCGAGGGGGG	chr17:7477081-7477305(+)$1	224	18	28	18.3333
GGGUGGGGGC	chr19:7977906-7978158(+)$1	252	109	119	18.7878
GGGAGGAGGG	chr17:7080809-7081061(-)$1	252	107	117	18.9393
GGGACGGGGC	chr19:56180125-56180417(+)$1	292	115	125	18.4090
GGGAAGGGGC	chr12:7024291-7024522(+)$1	231	209	219	18.4090
GGGAGGGGGG	chrX:70280419-70280702(-)$1	283	139	149	23.1818
GGGAGGUGGG	chr19:12811697-12811957(-)$1	260	100	110	18.7878
GGGAGGGGAG	chr12:56554468-56554734(+)$1	266	122	132	19.2424
gggagcgggg	chr9:35690593-35690886(-)$1	293	46	56	18.7121
GGAAGGGGGU	chr14:54421085-54421331(-)$1	246	47	57	17.4999
GGGAGGGGCG	chr16:28222640-28222947(-)$1	307	30	40	19.2424
GGGAGGGGCG	chr19:18548361-18548587(-)$1	226	187	197	19.2424
GGGAGGGUGG	chr19:54379322-54379611(+)$1	289	55	65	18.5606
GGGAGGGGGG	chrX:133930873-133931138(-)$1	265	105	115	23.1818
GGGACGGGGU	chr17:78194984-78195277(+)$1	293	165	175	17.8030
GGGAGGUGGU	chr19:50363530-50363843(+)$1	313	232	242	17.6515
GGGAGGGGGA	chr22:38203079-38203290(+)$1	211	30	40	21.9696
gggagggcgg	chr2:74684572-74684850(+)$1	278	133	143	18.5606
GGAAGGGGGC	chr11:64815130-64815487(-)$1	357	37	47	18.1060
GGGAGGGGGG	chr20:57474965-57475213(+)$1	248	164	174	23.1818
GGGAGGGGAU	chr17:7082302-7082543(-)$1	241	157	167	18.1060
GGGAAGGGGU	chr16:28835250-28835560(+)$1	310	13	23	17.8030
GGGAGGGGAU	chr17:7082343-7082598(-)$1	255	212	222	18.1060
GGGAGGGGGA	chr19:49622562-49622931(+)$1	369	63	73	21.9696
GGGAGGGGGC	chr19:54659078-54659387(+)$1	309	193	203	22.6515
GGGAGGGGGC	chr3:149683579-149683840(-)$1	261	115	125	22.6515
gggagggggc	chr2:242447640-242447920(-)$1	280	100	110	22.6515
GGGAGGGGGC	chr17:80273518-80273777(-)$1	259	135	145	22.6515
GGGAGGGGGU	chr22:25005272-25005534(+)$1	262	121	131	22.0454
GGGAGGGGGG	chr20:62272068-62272362(-)$1	294	132	142	23.1818
GGGAGGGGUG	chr19:40738226-40738487(-)$1	261	104	114	19.0909
GGGAGAGGGC	chr16:571735-572005(+)$1	270	124	134	18.4848
GGGAGAGGGG	chr2:98273053-98273344(-)$1	291	48	58	19.0151
GGGAUGGGGG	chr19:51302298-51302560(-)$1	262	112	122	18.7878
GGGAGGGGUC	chr19:7978198-7978477(+)$1	279	115	125	18.5606
GGGACGGGGU	chr22:45127940-45128246(+)$1	306	46	56	17.8030
GGGCGGGGGC	chr7:47621100-47621428(-)$1	328	84	94	18.7121
GGGAGGGGCC	chr20:62338450-62338700(-)$1	250	4	14	18.7121
GGGGGGGGGG	chr3:49723591-49723838(-)$1	247	100	110	19.0151
AGGAGGGGGA	chr17:73996468-73996728(+)$1	260	230	240	17.3484
GGGAGGGAGA	chr19:50815478-50815832(-)$1	354	22	32	17.4242
GGGCGGGGGU	chr16:4744391-4744693(+)$1	302	22	32	18.1060
GGGUGGGGGG	chr5:137274204-137274453(-)$1	249	108	118	19.3181
GGGAGGGGGA	chr22:38523080-38523362(-)$1	282	131	141	21.9696

#otherMatches

#Struct PSSM
EEKKCCCa[a	chr16:1821059-1821345(-)$1	286	102	112	17.7272
d]hhhhhhhh	chr22:45622638-45622896(-)$1	258	121	131	17.8030
iiiiiiinnn	chr8:145067379-145067649(+)$1	270	137	147	21.9696
oooogggggg	chr19:18547930-18548214(-)$1	284	138	148	18.7121
DKKJJJJJJJ	chr8:71314176-71314432(-)$1	256	62	72	18.1060
qqqqcccggg	chr7:5569355-5569631(-)$1	276	124	134	22.0454
:gggggggqq	chr9:139904715-139905014(-)$1	299	146	156	18.7878
HH::dddd[b	chr16:4744554-4744867(+)$1	313	218	228	18.9393
a::::FFFFF	chr2:242447556-242447840(-)$1	284	20	30	22.6515
m=========	chr16:29821948-29822203(+)$1	255	54	64	18.6363
dddd55555c	chr11:18034123-18034463(-)$1	340	107	117	17.2727
JJJJJJJJJJ	chr17:36955988-36956261(-)$1	273	255	265	18.9393
ffffffdddd	chr20:36146340-36146603(-)$1	263	44	54	18.0303
d!!ccclllc	chr13:111357955-111358243(-)$1	288	51	61	18.7121
2ccc]=====	chr19:58991263-58991524(-)$1	261	234	244	19.3181
ddddEEEEE:	chr7:150819907-150820183(+)$1	276	257	267	18.0303
JJJJJJJJJB	chr20:62271934-62272200(-)$1	266	37	47	18.7878
hhhhhhdddd	chr2:220151304-220151552(+)$1	248	193	203	19.2424
gggggggooo	chr17:76818900-76819140(-)$1	240	132	142	19.0151
ELLLCCC{CC	chr6:33588884-33589209(+)$1	325	149	159	23.1818
eebb[eeeee	chr22:25005474-25005716(+)$1	242	182	192	19.0151
fffff22ddd	chr19:56825772-56826085(-)$1	313	105	115	17.8030
[ammmma]a2	chr17:7477081-7477305(+)$1	224	18	28	18.3333
DDD}EEEEE}	chr19:7977906-7978158(+)$1	252	109	119	18.7878
JJJJJJJJJJ	chr17:7080809-7081061(-)$1	252	107	117	18.9393
ffffFFFFFF	chr19:56180125-56180417(+)$1	292	115	125	18.4090
hhh22a22ff	chr12:7024291-7024522(+)$1	231	209	219	18.4090
==hhhhhhhh	chrX:70280419-70280702(-)$1	283	139	149	23.1818
sssssfffff	chr19:12811697-12811957(-)$1	260	100	110	18.7878
eeedddd]dd	chr12:56554468-56554734(+)$1	266	122	132	19.2424
[a^^^^^^^^	chr9:35690593-35690886(-)$1	293	46	56	18.7121
e333a]a]dd	chr14:54421085-54421331(-)$1	246	47	57	17.4999
JJJJJJJJLL	chr16:28222640-28222947(-)$1	307	30	40	19.2424
BBDDDD}FFF	chr19:18548361-18548587(-)$1	226	187	197	19.2424
=======:GG	chr19:54379322-54379611(+)$1	289	55	65	18.5606
fff22eeeee	chrX:133930873-133931138(-)$1	265	105	115	23.1818
eeeee####f	chr17:78194984-78195277(+)$1	293	165	175	17.8030
nnnnneeeee	chr19:50363530-50363843(+)$1	313	232	242	17.6515
7777777eee	chr22:38203079-38203290(+)$1	211	30	40	21.9696
dsssssssss	chr2:74684572-74684850(+)$1	278	133	143	18.5606
uuuubb22dd	chr11:64815130-64815487(-)$1	357	37	47	18.1060
cccbbeeeee	chr20:57474965-57475213(+)$1	248	164	174	23.1818
eeeee^^^^^	chr17:7082302-7082543(-)$1	241	157	167	18.1060
B{CCCKKFFF	chr16:28835250-28835560(+)$1	310	13	23	17.8030
HHHHHHHH}E	chr17:7082343-7082598(-)$1	255	212	222	18.1060
CCC}BB}FFF	chr19:49622562-49622931(+)$1	369	63	73	21.9696
fff::eeeee	chr19:54659078-54659387(+)$1	309	193	203	22.6515
dd22bb22ff	chr3:149683579-149683840(-)$1	261	115	125	22.6515
a333bb]ccc	chr2:242447640-242447920(-)$1	280	100	110	22.6515
ggggg!!ddd	chr17:80273518-80273777(-)$1	259	135	145	22.6515
gggggggeee	chr22:25005272-25005534(+)$1	262	121	131	22.0454
!!iiiiiiii	chr20:62272068-62272362(-)$1	294	132	142	23.1818
GGGGGGCCC{	chr19:40738226-40738487(-)$1	261	104	114	19.0909
:CCCZZZCCC	chr16:571735-572005(+)$1	270	124	134	18.4848
eeeeeGGGGG	chr2:98273053-98273344(-)$1	291	48	58	19.0151
22dddd22dd	chr19:51302298-51302560(-)$1	262	112	122	18.7878
qqqqqqeeee	chr19:7978198-7978477(+)$1	279	115	125	18.5606
ccc::::ddd	chr22:45127940-45128246(+)$1	306	46	56	17.8030
========!!	chr7:47621100-47621428(-)$1	328	84	94	18.7121
CC::A{HHHH	chr20:62338450-62338700(-)$1	250	4	14	18.7121
ffff]a]a]a	chr3:49723591-49723838(-)$1	247	100	110	19.0151
dddHHHHHHH	chr17:73996468-73996728(+)$1	260	230	240	17.3484
fff[gggggg	chr19:50815478-50815832(-)$1	354	22	32	17.4242
FFFF::eeee	chr16:4744391-4744693(+)$1	302	22	32	18.1060
HHHHHHHH}F	chr5:137274204-137274453(-)$1	249	108	118	19.3181
gggggg]ddd	chr22:38523080-38523362(-)$1	282	131	141	21.9696

#DB
((..((((.(	chr16:1821059-1821345(-)$1	1	102	112	17.7272
).))))))))	chr22:45622638-45622896(-)$1	1	121	131	17.8030
(((((((...	chr8:145067379-145067649(+)$1	1	137	147	21.9696
....))))))	chr19:18547930-18548214(-)$1	1	138	148	18.7121
(..(((((((	chr8:71314176-71314432(-)$1	1	62	72	18.1060
....)))(((	chr7:5569355-5569631(-)$1	1	124	134	22.0454
.(((((((..	chr9:139904715-139905014(-)$1	1	146	156	18.7878
))..((((.(	chr16:4744554-4744867(+)$1	1	218	228	18.9393
)....(((((	chr2:242447556-242447840(-)$1	1	20	30	22.6515
.)))))))))	chr16:29821948-29822203(+)$1	1	54	64	18.6363
)))).....)	chr11:18034123-18034463(-)$1	1	107	117	17.2727
))))))))))	chr17:36955988-36956261(-)$1	1	255	265	18.9393
))))))))))	chr20:36146340-36146603(-)$1	1	44	54	18.0303
(..(((...)	chr13:111357955-111358243(-)$1	1	51	61	18.7121
.))).)))))	chr19:58991263-58991524(-)$1	1	234	244	19.3181
))))))))).	chr7:150819907-150820183(+)$1	1	257	267	18.0303
((((((((((	chr20:62271934-62272200(-)$1	1	37	47	18.7878
))))))))))	chr2:220151304-220151552(+)$1	1	193	203	19.2424
(((((((...	chr17:76818900-76819140(-)$1	1	132	142	19.0151
(...(((.((	chr6:33588884-33589209(+)$1	1	149	159	23.1818
((((.(((((	chr22:25005474-25005716(+)$1	1	182	192	19.0151
)))))..)))	chr19:56825772-56826085(-)$1	1	105	115	17.8030
.(....).).	chr17:7477081-7477305(+)$1	1	18	28	18.3333
))).))))).	chr19:7977906-7978158(+)$1	1	109	119	18.7878
((((((((((	chr17:7080809-7081061(-)$1	1	107	117	18.9393
))))))))))	chr19:56180125-56180417(+)$1	1	115	125	18.4090
)))..)..))	chr12:7024291-7024522(+)$1	1	209	219	18.4090
((((((((((	chrX:70280419-70280702(-)$1	1	139	149	23.1818
.....)))))	chr19:12811697-12811957(-)$1	1	100	110	18.7878
))))))).))	chr12:56554468-56554734(+)$1	1	122	132	19.2424
.(........	chr9:35690593-35690886(-)$1	1	46	56	18.7121
)...).).))	chr14:54421085-54421331(-)$1	1	47	57	17.4999
((((((((..	chr16:28222640-28222947(-)$1	1	30	40	19.2424
)))))).)))	chr19:18548361-18548587(-)$1	1	187	197	19.2424
))))))).((	chr19:54379322-54379611(+)$1	1	55	65	18.5606
)))..)))))	chrX:133930873-133931138(-)$1	1	105	115	23.1818
(((((....(	chr17:78194984-78195277(+)$1	1	165	175	17.8030
.....)))))	chr19:50363530-50363843(+)$1	1	232	242	17.6515
.......)))	chr22:38203079-38203290(+)$1	1	30	40	21.9696
(.........	chr2:74684572-74684850(+)$1	1	133	143	18.5606
....))..))	chr11:64815130-64815487(-)$1	1	37	47	18.1060
((((((((((	chr20:57474965-57475213(+)$1	1	164	174	23.1818
(((((.....	chr17:7082302-7082543(-)$1	1	157	167	18.1060
(.(((..(((	chr16:28835250-28835560(+)$1	1	13	23	17.8030
)))))))).)	chr17:7082343-7082598(-)$1	1	212	222	18.1060
))).)).)))	chr19:49622562-49622931(+)$1	1	63	73	21.9696
)))..(((((	chr19:54659078-54659387(+)$1	1	193	203	22.6515
))..))..))	chr3:149683579-149683840(-)$1	1	115	125	22.6515
)...)).)))	chr2:242447640-242447920(-)$1	1	100	110	22.6515
(((((..(((	chr17:80273518-80273777(-)$1	1	135	145	22.6515
((((((((((	chr22:25005272-25005534(+)$1	1	121	131	22.0454
..((((((((	chr20:62272068-62272362(-)$1	1	132	142	23.1818
))))))(((.	chr19:40738226-40738487(-)$1	1	104	114	19.0909
.)))...)))	chr16:571735-572005(+)$1	1	124	134	18.4848
)))))(((((	chr2:98273053-98273344(-)$1	1	48	58	19.0151
..))))..))	chr19:51302298-51302560(-)$1	1	112	122	18.7878
......))))	chr19:7978198-7978477(+)$1	1	115	125	18.5606
)))....(((	chr22:45127940-45128246(+)$1	1	46	56	17.8030
((((((((..	chr7:47621100-47621428(-)$1	1	84	94	18.7121
((..(.((((	chr20:62338450-62338700(-)$1	1	4	14	18.7121
)))).).).)	chr3:49723591-49723838(-)$1	1	100	110	19.0151
))))))))))	chr17:73996468-73996728(+)$1	1	230	240	17.3484
(((.((((((	chr19:50815478-50815832(-)$1	1	22	32	17.4242
((((..((((	chr16:4744391-4744693(+)$1	1	22	32	18.1060
)))))))).)	chr5:137274204-137274453(-)$1	1	108	118	19.3181
)))))).)))	chr22:38523080-38523362(-)$1	1	131	141	21.9696

#PSSM
G : 0.87	g : 0.07	A : 0.03	c : 0.01	
G : 0.89	g : 0.09	C : 0.01	
G : 0.86	g : 0.09	A : 0.04	
A : 0.75	a : 0.09	U : 0.07	C : 0.06	G : 0.01	
G : 0.80	g : 0.09	A : 0.04	C : 0.04	U : 0.01	
G : 0.83	g : 0.07	A : 0.07	c : 0.01	
G : 0.81	g : 0.09	A : 0.06	U : 0.03	
G : 0.86	g : 0.07	A : 0.03	U : 0.01	c : 0.01	
G : 0.75	g : 0.09	C : 0.06	A : 0.06	U : 0.03	
G : 0.34	C : 0.25	U : 0.16	A : 0.13	g : 0.04	c : 0.03	a : 0.01	

#score	1284.6969696969682
#seq	66
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_UTR_m1_run2.nuc.txt

#NT
AAAAAGAGAAA	chr5:33467644-33467905(+)$1	261	29	40	20.1875
AACAAGAAAUA	chr12:122995555-122995760(-)$1	205	87	98	18.3125
AAGAAGAGAAA	chr1:165723364-165723613(-)$1	249	108	119	23.6250
AAGAAAACAAA	chr17:56080818-56081051(-)$1	233	108	119	18.6250
AUGAAGAAAAA	chr16:8997030-8997358(-)$1	328	148	159	21.7500
AAGAAGAAAAA	chr15:44063202-44063416(+)$1	214	167	178	25.8125
AAGAAGGAAAC	chr3:169700848-169701142(+)$1	294	124	135	18.9375
AAGAAGAAAAC	chr12:46357788-46358061(-)$1	273	114	125	22.6875
AACAAGAGAAA	chr12:122992666-122992913(-)$1	247	102	113	20.5000
AAGAAGAGAAA	chr2:187368820-187369039(+)$1	219	71	82	23.6250
aggaaggaaaa	chr18:9254585-9254877(+)$1	292	154	165	18.0000
AAGAAUAAAAA	chr10:17279196-17279548(+)$1	352	111	122	21.7500
AAGAAGAAAAA	chr2:190339931-190340257(+)$1	326	39	50	25.8125
GAGAAGAAGAA	chr9:127998544-127998798(-)$1	254	118	129	17.0625
AAUAAGAAAAG	chr4:68358489-68358789(-)$1	300	166	177	18.9375

#otherMatches

#Struct PSSM
""ccc&&&&&&	chr21:40571099-40571412(-)$1	313	151	162	18.0000
ctttttttttt	chr5:33467644-33467905(+)$1	261	29	40	20.1875
>>>>>>>>>>>	chr12:122995555-122995760(-)$1	205	87	98	18.3125
33bb]dddd::	chr1:165723364-165723613(-)$1	249	108	119	23.6250
JJJJJJJJ::h	chr17:56080818-56081051(-)$1	233	108	119	18.6250
EEYYA}IIIII	chr16:8997030-8997358(-)$1	328	148	159	21.7500
]dddd:::::F	chr15:44063202-44063416(+)$1	214	167	178	25.8125
:::::FFFFFF	chr3:169700848-169701142(+)$1	294	124	135	18.9375
JJJJJJJJYYC	chr12:46357788-46358061(-)$1	273	114	125	22.6875
:::::::::::	chr12:122992666-122992913(-)$1	247	102	113	20.5000
:::::::::::	chr2:187368820-187369039(+)$1	219	71	82	23.6250
:::::::::::	chr18:9254585-9254877(+)$1	292	154	165	18.0000
:::::JJJJJJ	chr10:17279196-17279548(+)$1	352	111	122	21.7500
d++++++++++	chr2:190339931-190340257(+)$1	326	39	50	25.8125
::dddd!!ddd	chr9:127998544-127998798(-)$1	254	118	129	17.0625
gggg::::::F	chr4:68358489-68358789(-)$1	300	166	177	18.9375

#DB
..(((......	chr21:40571099-40571412(-)$1	1	151	162	18.0000
(..........	chr5:33467644-33467905(+)$1	1	29	40	20.1875
...........	chr12:122995555-122995760(-)$1	1	87	98	18.3125
..)).))))..	chr1:165723364-165723613(-)$1	1	108	119	23.6250
((((((((..(	chr17:56080818-56081051(-)$1	1	108	119	18.6250
))..).)))))	chr16:8997030-8997358(-)$1	1	148	159	21.7500
.)))).....)	chr15:44063202-44063416(+)$1	1	167	178	25.8125
.....))))))	chr3:169700848-169701142(+)$1	1	124	135	18.9375
))))))))..)	chr12:46357788-46358061(-)$1	1	114	125	22.6875
...........	chr12:122992666-122992913(-)$1	1	102	113	20.5000
...........	chr2:187368820-187369039(+)$1	1	71	82	23.6250
...........	chr18:9254585-9254877(+)$1	1	154	165	18.0000
.....))))))	chr10:17279196-17279548(+)$1	1	111	122	21.7500
(..........	chr2:190339931-190340257(+)$1	1	39	50	25.8125
..((((..(((	chr9:127998544-127998798(-)$1	1	118	129	17.0625
))))......)	chr4:68358489-68358789(-)$1	1	166	177	18.9375

#PSSM
A : 0.87	a : 0.06	G : 0.06	
A : 0.87	U : 0.06	g : 0.06	
G : 0.68	C : 0.12	A : 0.06	g : 0.06	U : 0.06	
A : 0.93	a : 0.06	
A : 0.87	U : 0.06	a : 0.06	
G : 0.81	A : 0.06	g : 0.06	U : 0.06	
A : 0.87	G : 0.06	g : 0.06	
A : 0.62	G : 0.25	C : 0.06	a : 0.06	
A : 0.87	a : 0.06	G : 0.06	
A : 0.87	U : 0.06	a : 0.06	
A : 0.68	C : 0.12	U : 0.06	a : 0.06	G : 0.06	

#score	333.625
#seq	16
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_transcript_m2_run1.nuc.txt

#NT
AGGGGGG	chr6:44122996-44123283(+)$1	287	87	94	13.6562
GGGUGGG	chr19:991534-991790(+)$1	256	71	78	15.4531
AGGUGGG	chr7:99001408-99001679(-)$1	271	177	184	16.8593
GGGUGGG	chr10:73576257-73576541(-)$1	284	22	29	15.4531
AGGCGGG	chr10:27443076-27443378(-)$1	302	207	214	13.5000
GGGUGGG	chr9:135973041-135973323(-)$1	282	69	76	15.4531
GGGUGGG	chrX:48830092-48830384(-)$1	292	147	154	15.4531
AGGGGGG	chr17:38248550-38248839(+)$1	289	88	95	13.6562
AUGUGGG	chr19:7978277-7978565(+)$1	288	81	88	12.7187
AGGUGGG	chr1:22149537-22149769(-)$1	232	102	109	16.8593
AUGUGGG	chr6:32152757-32153040(-)$1	283	251	258	12.7187
GGGUGGG	chr2:70167202-70167450(+)$1	248	46	53	15.4531
AGCUGGG	chr1:226107672-226107955(-)$1	283	104	111	12.3281
GGGUGGG	chr2:219139014-219139307(-)$1	293	259	266	15.4531
AGCUGGG	chr7:128499097-128499381(+)$1	284	179	186	12.3281
GGGUGGG	chr1:235273369-235273675(-)$1	306	36	43	15.4531
AGGAGGG	chr11:64894839-64895101(-)$1	262	183	190	13.7343
AGCUGGG	chr22:50357346-50357603(+)$1	257	206	213	12.3281
AGGUGGG	chr7:6695718-6695991(+)$1	273	202	209	16.8593
GGGUGGG	chr6:33377417-33377643(+)$1	226	138	145	15.4531
AAGUGGG	chr19:4035069-4035311(+)$1	242	7	14	12.6406
AGGAGGG	chr19:3958502-3958767(-)$1	265	13	20	13.7343
AGGAGGG	chr17:79876179-79876429(-)$1	250	26	33	13.7343
GGGUGGG	chr2:220113380-220113669(+)$1	289	101	108	15.4531
GGGUGGG	chr2:240287153-240287388(-)$1	235	218	225	15.4531
AGGGGGG	chr11:62482871-62483084(-)$1	213	145	152	13.6562
agguggg	chr6:149638687-149638944(+)$1	257	101	108	16.8593
GGGUGGG	chr17:7093161-7093429(-)$1	268	95	102	15.4531
AGGAGGG	chr19:54972196-54972440(+)$1	244	125	132	13.7343
AGGGGGG	chr22:42303077-42303376(+)$1	299	143	150	13.6562
GGGUGGG	chr3:196074530-196074822(-)$1	292	88	95	15.4531
CGGUGGG	chr19:10406936-10407193(+)$1	257	21	28	14.1250
UGGUGGG	chr17:42283636-42283905(-)$1	269	204	211	14.1250
AUGUGGG	chr19:10942302-10942617(+)$1	315	90	97	12.7187
UGGUGGG	chr18:55217085-55217340(-)$1	255	99	106	14.1250
AGGUGGG	chr2:97532385-97532596(-)$1	211	89	96	16.8593
GGGUGGG	chr1:235273475-235273737(-)$1	262	98	105	15.4531
CGGUGGG	chr1:110950106-110950355(-)$1	249	102	109	14.1250
AGGCGGG	chr7:5569357-5569601(-)$1	244	73	80	13.5000
AGGUGGG	chr14:23389889-23390166(-)$1	277	196	203	16.8593
CGGUGGG	chr19:17321100-17321399(+)$1	299	102	109	14.1250
GGGUGGG	chr1:47682166-47682407(-)$1	241	119	126	15.4531
AGGGGGG	chr2:130948086-130948333(+)$1	247	69	76	13.6562
GGGUGGG	chr17:20905980-20906227(-)$1	247	118	125	15.4531
GGGUGGG	chr20:17594291-17594568(-)$1	277	105	112	15.4531
AAGUGGG	chr9:119942886-119943153(-)$1	267	35	42	12.6406
AGGCGGG	chr5:179248459-179248763(+)$1	304	51	58	13.5000
AGGUGGG	chrX:153664684-153664920(+)$1	236	63	70	16.8593
agggggg	chr18:55711515-55711821(+)$1	306	15	22	13.6562
UGGUGGG	chr3:184052593-184052907(+)$1	314	107	114	14.1250
AGGUGGG	chr19:1410018-1410280(+)$1	262	58	65	16.8593
AGGUGGG	chr19:40947732-40948031(-)$1	299	95	102	16.8593
AGGAGGG	chr1:20978695-20978924(-)$1	229	92	99	13.7343
GGGUGGG	chr11:62482338-62482622(-)$1	284	1	8	15.4531
agguggg	chr2:20550344-20550582(-)$1	238	77	84	16.8593
AUGUGGG	chr17:56168139-56168391(+)$1	252	53	60	12.7187
AGGAGGG	chr16:1425941-1426311(-)$1	370	5	12	13.7343
AGGAGGG	chr11:61067058-61067319(-)$1	261	147	154	13.7343
GGGUGGG	chr9:140167572-140167852(+)$1	280	120	127	15.4531
AGGUGGG	chr19:40947089-40947353(-)$1	264	144	151	16.8593
AGGCGGG	chr1:109817370-109817621(+)$1	251	2	9	13.5000
GGGUGGG	chr6:37142111-37142369(+)$1	258	35	42	15.4531
GGGUGGG	chr16:4932045-4932325(+)$1	280	108	115	15.4531

#otherMatches

#Struct PSSM
iiii!!b	chr7:26232042-26232270(-)$1	228	101	108	12.6406
]ddddgg	chr6:44122996-44123283(+)$1	287	87	94	13.6562
bb[dddd	chr19:991534-991790(+)$1	256	71	78	15.4531
ppccc22	chr7:99001408-99001679(-)$1	271	177	184	16.8593
CCC{CCC	chr10:73576257-73576541(-)$1	284	22	29	15.4531
]ffffff	chr10:27443076-27443378(-)$1	302	207	214	13.5000
]eeeeef	chr9:135973041-135973323(-)$1	282	69	76	15.4531
IIIIIII	chrX:48830092-48830384(-)$1	292	147	154	15.4531
:::FFFF	chr17:38248550-38248839(+)$1	289	88	95	13.6562
:ccc[hh	chr19:7978277-7978565(+)$1	288	81	88	12.7187
dddcccn	chr1:22149537-22149769(-)$1	232	102	109	16.8593
mmmccc7	chr6:32152757-32153040(-)$1	283	251	258	12.7187
dddd]==	chr2:70167202-70167450(+)$1	248	46	53	15.4531
fffdddd	chr1:226107672-226107955(-)$1	283	104	111	12.3281
ddddddd	chr2:219139014-219139307(-)$1	293	259	266	15.4531
oooooog	chr7:128499097-128499381(+)$1	284	179	186	12.3281
NNNDDDD	chr1:235273369-235273675(-)$1	306	36	43	15.4531
3iiiiii	chr11:64894839-64895101(-)$1	262	183	190	13.7343
BB}FFFF	chr22:50357346-50357603(+)$1	257	206	213	12.3281
444bbee	chr7:6695718-6695991(+)$1	273	202	209	16.8593
a]eeeee	chr6:33377417-33377643(+)$1	226	138	145	15.4531
MMMMDDD	chr19:4035069-4035311(+)$1	242	7	14	12.6406
{BB{JJJ	chr19:3958502-3958767(-)$1	265	13	20	13.7343
:BB{EEE	chr17:79876179-79876429(-)$1	250	26	33	13.7343
fff]ccc	chr2:220113380-220113669(+)$1	289	101	108	15.4531
ggggggg	chr2:240287153-240287388(-)$1	235	218	225	15.4531
!!ggggg	chr11:62482871-62483084(-)$1	213	145	152	13.6562
[eeeee[	chr6:149638687-149638944(+)$1	257	101	108	16.8593
"eeeee[	chr17:7093161-7093429(-)$1	268	95	102	15.4531
ddfffff	chr19:54972196-54972440(+)$1	244	125	132	13.7343
gggggg[	chr22:42303077-42303376(+)$1	299	143	150	13.6562
ggggg55	chr3:196074530-196074822(-)$1	292	88	95	15.4531
hssssss	chr19:10406936-10407193(+)$1	257	21	28	14.1250
f22bb]a	chr17:42283636-42283905(-)$1	269	204	211	14.1250
::HHHHH	chr19:10942302-10942617(+)$1	315	90	97	12.7187
"======	chr18:55217085-55217340(-)$1	255	99	106	14.1250
EEE:ccc	chr2:97532385-97532596(-)$1	211	89	96	16.8593
+++++++	chr1:235273475-235273737(-)$1	262	98	105	15.4531
ddda]ee	chr1:110950106-110950355(-)$1	249	102	109	14.1250
FFFF{HH	chr7:5569357-5569601(-)$1	244	73	80	13.5000
8======	chr14:23389889-23390166(-)$1	277	196	203	16.8593
ddd[ddd	chr19:17321100-17321399(+)$1	299	102	109	14.1250
=======	chr1:47682166-47682407(-)$1	241	119	126	15.4531
nnnnddd	chr2:130948086-130948333(+)$1	247	69	76	13.6562
ctttttt	chr17:20905980-20906227(-)$1	247	118	125	15.4531
NNDDDD{	chr20:17594291-17594568(-)$1	277	105	112	15.4531
c]dddd2	chr9:119942886-119943153(-)$1	267	35	42	12.6406
mmmmbb]	chr5:179248459-179248763(+)$1	304	51	58	13.5000
nndddde	chrX:153664684-153664920(+)$1	236	63	70	16.8593
LDDDD{C	chr18:55711515-55711821(+)$1	306	15	22	13.6562
CCC{FFF	chr3:184052593-184052907(+)$1	314	107	114	14.1250
[eeeee[	chr19:1410018-1410280(+)$1	262	58	65	16.8593
{IIIIII	chr19:40947732-40948031(-)$1	299	95	102	16.8593
!!ccc[=	chr1:20978695-20978924(-)$1	229	92	99	13.7343
::FFFFF	chr11:62482338-62482622(-)$1	284	1	8	15.4531
::::::e	chr2:20550344-20550582(-)$1	238	77	84	16.8593
##=====	chr17:56168139-56168391(+)$1	252	53	60	12.7187
CC{BBKK	chr16:1425941-1426311(-)$1	370	5	12	13.7343
=======	chr11:61067058-61067319(-)$1	261	147	154	13.7343
~~~GGGG	chr9:140167572-140167852(+)$1	280	120	127	15.4531
ffffccc	chr19:40947089-40947353(-)$1	264	144	151	16.8593
ccc[aee	chr1:109817370-109817621(+)$1	251	2	9	13.5000
mmmdddd	chr6:37142111-37142369(+)$1	258	35	42	15.4531
ma]bb]c	chr16:4932045-4932325(+)$1	280	108	115	15.4531

#DB
((((..(	chr7:26232042-26232270(-)$1	1	101	108	12.6406
.))))))	chr6:44122996-44123283(+)$1	1	87	94	13.6562
((.((((	chr19:991534-991790(+)$1	1	71	78	15.4531
..)))..	chr7:99001408-99001679(-)$1	1	177	184	16.8593
(((.(((	chr10:73576257-73576541(-)$1	1	22	29	15.4531
.))))))	chr10:27443076-27443378(-)$1	1	207	214	13.5000
.))))))	chr9:135973041-135973323(-)$1	1	69	76	15.4531
(((((((	chrX:48830092-48830384(-)$1	1	147	154	15.4531
...((((	chr17:38248550-38248839(+)$1	1	88	95	13.6562
.(((.((	chr19:7978277-7978565(+)$1	1	81	88	12.7187
((((((.	chr1:22149537-22149769(-)$1	1	102	109	16.8593
...))).	chr6:32152757-32153040(-)$1	1	251	258	12.7187
)))).))	chr2:70167202-70167450(+)$1	1	46	53	15.4531
)))((((	chr1:226107672-226107955(-)$1	1	104	111	12.3281
))))))(	chr2:219139014-219139307(-)$1	1	259	266	15.4531
......)	chr7:128499097-128499381(+)$1	1	179	186	12.3281
...((((	chr1:235273369-235273675(-)$1	1	36	43	15.4531
.))))))	chr11:64894839-64895101(-)$1	1	183	190	13.7343
)).))))	chr22:50357346-50357603(+)$1	1	206	213	12.3281
...))))	chr7:6695718-6695991(+)$1	1	202	209	16.8593
).)))))	chr6:33377417-33377643(+)$1	1	138	145	15.4531
....(((	chr19:4035069-4035311(+)$1	1	7	14	12.6406
.((.(((	chr19:3958502-3958767(-)$1	1	13	20	13.7343
.((.(((	chr17:79876179-79876429(-)$1	1	26	33	13.7343
))).)))	chr2:220113380-220113669(+)$1	1	101	108	15.4531
)))))))	chr2:240287153-240287388(-)$1	1	218	225	15.4531
..(((((	chr11:62482871-62483084(-)$1	1	145	152	13.6562
.(((((.	chr6:149638687-149638944(+)$1	1	101	108	16.8593
.(((((.	chr17:7093161-7093429(-)$1	1	95	102	15.4531
(((((((	chr19:54972196-54972440(+)$1	1	125	132	13.7343
((((((.	chr22:42303077-42303376(+)$1	1	143	150	13.6562
)))))..	chr3:196074530-196074822(-)$1	1	88	95	15.4531
(......	chr19:10406936-10407193(+)$1	1	21	28	14.1250
)..)).)	chr17:42283636-42283905(-)$1	1	204	211	14.1250
..(((((	chr19:10942302-10942617(+)$1	1	90	97	12.7187
.((((((	chr18:55217085-55217340(-)$1	1	99	106	14.1250
(((.(((	chr2:97532385-97532596(-)$1	1	89	96	16.8593
.......	chr1:235273475-235273737(-)$1	1	98	105	15.4531
)))).))	chr1:110950106-110950355(-)$1	1	102	109	14.1250
((((.((	chr7:5569357-5569601(-)$1	1	73	80	13.5000
.))))))	chr14:23389889-23390166(-)$1	1	196	203	16.8593
(((.(((	chr19:17321100-17321399(+)$1	1	102	109	14.1250
(((((((	chr1:47682166-47682407(-)$1	1	119	126	15.4531
....)))	chr2:130948086-130948333(+)$1	1	69	76	13.6562
(......	chr17:20905980-20906227(-)$1	1	118	125	15.4531
..((((.	chr20:17594291-17594568(-)$1	1	105	112	15.4531
).)))).	chr9:119942886-119943153(-)$1	1	35	42	12.6406
....)).	chr5:179248459-179248763(+)$1	1	51	58	13.5000
..))))(	chrX:153664684-153664920(+)$1	1	63	70	16.8593
.((((.(	chr18:55711515-55711821(+)$1	1	15	22	13.6562
(((.(((	chr3:184052593-184052907(+)$1	1	107	114	14.1250
.(((((.	chr19:1410018-1410280(+)$1	1	58	65	16.8593
.((((((	chr19:40947732-40948031(-)$1	1	95	102	16.8593
..(((.(	chr1:20978695-20978924(-)$1	1	92	99	13.7343
..(((((	chr11:62482338-62482622(-)$1	1	1	8	15.4531
......(	chr2:20550344-20550582(-)$1	1	77	84	16.8593
..(((((	chr17:56168139-56168391(+)$1	1	53	60	12.7187
((.((..	chr16:1425941-1426311(-)$1	1	5	12	13.7343
(((((((	chr11:61067058-61067319(-)$1	1	147	154	13.7343
...))))	chr9:140167572-140167852(+)$1	1	120	127	15.4531
)))))))	chr19:40947089-40947353(-)$1	1	144	151	16.8593
(((.(((	chr1:109817370-109817621(+)$1	1	2	9	13.5000
...))))	chr6:37142111-37142369(+)$1	1	35	42	15.4531
.).)).)	chr16:4932045-4932325(+)$1	1	108	115	15.4531

#PSSM
A : 0.54	G : 0.31	a : 0.04	C : 0.04	U : 0.04	
G : 0.84	U : 0.06	A : 0.04	g : 0.04	
G : 0.90	C : 0.04	g : 0.04	
U : 0.70	A : 0.10	G : 0.07	C : 0.06	u : 0.03	g : 0.01	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	

#score	937.125
#seq	64
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_UTR_m2_run2.nuc.txt

#NT
CUGGGGAUGG	chr6:41700411-41700664(-)$1	253	20	30	15.2941
CGGCGGUGGG	chr1:895958-896236(+)$1	278	93	103	13.7254
CUAGGGAGGG	chr20:36149809-36150079(-)$1	270	76	86	14.4117
CUGGGGUUGC	chr6:16761454-16761704(+)$1	250	92	102	15.1960
CUGGGCUGGG	chr19:49864872-49865152(-)$1	280	29	39	16.9607
GGGGGGUGGG	chr15:74702098-74702373(-)$1	275	81	91	14.1176
CCGGGGAGGC	chr1:36789237-36789459(+)$1	222	140	150	15.4901
CUGGGGCGGA	chr6:151187444-151187769(+)$1	325	96	106	16.8627
CCgggguggg	chr16:447633-447883(+)$1	250	17	27	18.7254
CUGGGGAGCC	chr3:9957912-9958164(+)$1	252	197	207	13.3333
CUGGGGUGGC	chr13:24153360-24153653(+)$1	293	124	134	19.1176
GUGGGGUGGC	chr19:1472856-1473172(-)$1	316	90	100	14.9019
CUGGGGUGUU	chr12:111798570-111798854(-)$1	284	170	180	14.2156
CUGGGCAGGG	chr14:105915453-105915701(+)$1	248	175	185	15.3921
CCGGGGUGCG	chr1:20812126-20812420(-)$1	294	160	170	14.5098
CUGGGGUCGA	chr2:153574887-153575152(+)$1	265	40	50	15.0000
CCGGGGGGGA	chr17:235790-236092(-)$1	302	111	121	14.3137
cugagguggg	chr3:128840521-128840762(-)$1	241	16	26	16.2745
CUGGGCUGGA	chr5:176873704-176874032(-)$1	328	211	221	15.1960
CGGGGGUGGG	chr2:174828747-174829011(-)$1	264	122	132	18.3333
CUGGGGUGGG	chr17:7141368-7141626(-)$1	258	104	114	20.7843
cugggggcgg	chr16:777105-777413(+)$1	308	154	164	14.1176
CUGGGGAGGG	chr7:1098636-1098881(-)$1	245	92	102	19.2156
CCGGGGUGCG	chr1:20812248-20812479(-)$1	231	219	229	14.5098
cuggggaggg	chr9:140445562-140445832(+)$1	270	47	57	19.2156
CUGGUGUGGU	chr14:100042642-100042907(-)$1	265	47	57	13.9215
CCGGGGUGGG	chr16:4744605-4744865(+)$1	260	103	113	18.7254
CCGAGGUGGG	chr6:3269394-3269634(-)$1	240	96	106	14.2156
CGGGGGAGGG	chr1:235813044-235813305(-)$1	261	105	115	16.7647
CUGGGGAGAG	chr19:1471120-1471336(-)$1	216	157	167	14.8039
CCGGggagga	chr17:55333767-55334048(+)$1	281	24	34	15.3921
CCGGGGCGGA	chr7:50850154-50850398(-)$1	244	112	122	14.8039
CUGGGGUGGU	chr16:75144681-75144949(+)$1	268	101	111	18.6274
CUGGGCUGGA	chr16:87734007-87734252(-)$1	245	213	223	15.1960
cgggggcggg	chr7:127671506-127671786(+)$1	280	262	272	16.1764
AGGGGGUGGG	chr14:54421079-54421337(-)$1	258	56	66	14.0196
CUGGGCUGGG	chr2:241568939-241569209(+)$1	270	120	130	16.9607
ccggggUGGU	chr6:111196677-111196925(+)$1	248	41	51	16.5686
GUGGGGUGGG	chr19:2425974-2426200(-)$1	226	38	48	16.5686
CUGGGGAGGA	chr17:38375805-38376225(+)$1	420	161	171	17.4509
CUGGGGACGG	chr6:41701884-41702153(-)$1	269	253	263	15.1960
CUGGGGAUGC	chr10:697069-697326(-)$1	257	32	42	13.6274
CUGGGCUGGC	chr19:1275264-1275561(+)$1	297	13	23	15.2941
CCGGGGCGGG	chr3:39194939-39195207(-)$1	268	10	20	16.5686
CAGGGGCGGC	chr22:38691291-38691553(-)$1	262	226	236	13.9215
CGGGAGUggg	chr16:75284562-75284829(-)$1	267	27	37	13.6274
CUGGGGUGGA	chr17:45772876-45773107(+)$1	231	204	214	19.0196
AUGGGGUGGU	chr11:404718-404987(+)$1	269	86	96	14.3137
CUGGGGUGGC	chr19:17354974-17355291(-)$1	317	66	76	19.1176
CUGGGGCUGG	chr17:34058587-34058865(+)$1	278	108	118	14.7058

#otherMatches

#Struct PSSM
gggggggfff	chr5:179233067-179233334(-)$1	267	187	197	16.9607
ggqqqqqqqq	chr6:41700411-41700664(-)$1	253	20	30	15.2941
4ccc:bb[dd	chr1:895958-896236(+)$1	278	93	103	13.7254
qqqqqqqa]c	chr20:36149809-36150079(-)$1	270	76	86	14.4117
hhhhdddd[g	chr6:16761454-16761704(+)$1	250	92	102	15.1960
hhhhhh]eee	chr19:49864872-49865152(-)$1	280	29	39	16.9607
fhhhhhhhh]	chr15:74702098-74702373(-)$1	275	81	91	14.1176
ddd[bblllb	chr1:36789237-36789459(+)$1	222	140	150	15.4901
:cccqqqqqq	chr6:151187444-151187769(+)$1	325	96	106	16.8627
DD{CCC::GG	chr16:447633-447883(+)$1	250	17	27	18.7254
ddmmmmdddd	chr3:9957912-9958164(+)$1	252	197	207	13.3333
KFFFFFFddd	chr13:24153360-24153653(+)$1	293	124	134	19.1176
e]bb]ccccc	chr19:1472856-1473172(-)$1	316	90	100	14.9019
=======mmm	chr12:111798570-111798854(-)$1	284	170	180	14.2156
33eeeeeccc	chr14:105915453-105915701(+)$1	248	175	185	15.3921
FFFFFF}A}D	chr1:20812126-20812420(-)$1	294	160	170	14.5098
22dddd22dd	chr2:153574887-153575152(+)$1	265	40	50	15.0000
ffffff::::	chr17:235790-236092(-)$1	302	111	121	14.3137
ggoooooogg	chr3:128840521-128840762(-)$1	241	16	26	16.2745
[bbffffff[	chr5:176873704-176874032(-)$1	328	211	221	15.1960
4bb]ffffff	chr2:174828747-174829011(-)$1	264	122	132	18.3333
hhhhhhh[gg	chr17:7141368-7141626(-)$1	258	104	114	20.7843
a[========	chr16:777105-777413(+)$1	308	154	164	14.1176
CCCMMMMFFF	chr7:1098636-1098881(-)$1	245	92	102	19.2156
qqqeeeee]c	chr1:20812248-20812479(-)$1	231	219	229	14.5098
EEEEE{BBKK	chr9:140445562-140445832(+)$1	270	47	57	19.2156
:ffffff[gg	chr14:100042642-100042907(-)$1	265	47	57	13.9215
ee:ddddooo	chr16:4744605-4744865(+)$1	260	103	113	18.7254
mmmm======	chr6:3269394-3269634(-)$1	240	96	106	14.2156
:IIIIIIIII	chr1:235813044-235813305(-)$1	261	105	115	16.7647
GGGGGG:fff	chr19:1471120-1471336(-)$1	216	157	167	14.8039
bb^^^^^^^^	chr17:55333767-55334048(+)$1	281	24	34	15.3921
ffDDDDhhhh	chr7:50850154-50850398(-)$1	244	112	122	14.8039
gggdddd"""	chr16:75144681-75144949(+)$1	268	101	111	18.6274
33ccc22ccc	chr16:87734007-87734252(-)$1	245	213	223	15.1960
]a]bbhhhhh	chr7:127671506-127671786(+)$1	280	262	272	16.1764
3a]a]dddd]	chr14:54421079-54421337(-)$1	258	56	66	14.0196
eee"""eeee	chr2:241568939-241569209(+)$1	270	120	130	16.9607
ffff]dddd:	chr6:111196677-111196925(+)$1	248	41	51	16.5686
ffffff]ccc	chr19:2425974-2426200(-)$1	226	38	48	16.5686
cc((((((((	chr17:38375805-38376225(+)$1	420	161	171	17.4509
d]eeeee]cc	chr6:41701884-41702153(-)$1	269	253	263	15.1960
DD{CCC:ccc	chr10:697069-697326(-)$1	257	32	42	13.6274
b!!iiiiiii	chr19:1275264-1275561(+)$1	297	13	23	15.2941
IIIIIIILLL	chr3:39194939-39195207(-)$1	268	10	20	16.5686
4ffffffEEE	chr22:38691291-38691553(-)$1	262	226	236	13.9215
f:bb[cccee	chr16:75284562-75284829(-)$1	267	27	37	13.6274
cc]ccc]ddd	chr17:45772876-45773107(+)$1	231	204	214	19.0196
!ddddppppp	chr11:404718-404987(+)$1	269	86	96	14.3137
::::FFFFFF	chr19:17354974-17355291(-)$1	317	66	76	19.1176
::GGGGGGGK	chr17:34058587-34058865(+)$1	278	108	118	14.7058

#DB
)))))))(((	chr5:179233067-179233334(-)$1	1	187	197	16.9607
((........	chr6:41700411-41700664(-)$1	1	20	30	15.2941
.))).((.((	chr1:895958-896236(+)$1	1	93	103	13.7254
.......).)	chr20:36149809-36150079(-)$1	1	76	86	14.4117
((((((((.(	chr6:16761454-16761704(+)$1	1	92	102	15.1960
)))))).)))	chr19:49864872-49865152(-)$1	1	29	39	16.9607
))))))))).	chr15:74702098-74702373(-)$1	1	81	91	14.1176
(((.((...)	chr1:36789237-36789459(+)$1	1	140	150	15.4901
.(((......	chr6:151187444-151187769(+)$1	1	96	106	16.8627
((.(((..((	chr16:447633-447883(+)$1	1	17	27	18.7254
((....))))	chr3:9957912-9958164(+)$1	1	197	207	13.3333
.(((((((((	chr13:24153360-24153653(+)$1	1	124	134	19.1176
).)).)))((	chr19:1472856-1473172(-)$1	1	90	100	14.9019
(((((((...	chr12:111798570-111798854(-)$1	1	170	180	14.2156
..))))))))	chr14:105915453-105915701(+)$1	1	175	185	15.3921
)))))).).)	chr1:20812126-20812420(-)$1	1	160	170	14.5098
..))))..))	chr2:153574887-153575152(+)$1	1	40	50	15.0000
))))))....	chr17:235790-236092(-)$1	1	111	121	14.3137
((......))	chr3:128840521-128840762(-)$1	1	16	26	16.2745
.((((((((.	chr5:176873704-176874032(-)$1	1	211	221	15.1960
.)).))))))	chr2:174828747-174829011(-)$1	1	122	132	18.3333
(((((((.((	chr17:7141368-7141626(-)$1	1	104	114	20.7843
(.((((((((	chr16:777105-777413(+)$1	1	154	164	14.1176
(((....(((	chr7:1098636-1098881(-)$1	1	92	102	19.2156
...))))).)	chr1:20812248-20812479(-)$1	1	219	229	14.5098
(((((.((..	chr9:140445562-140445832(+)$1	1	47	57	19.2156
.((((((.((	chr14:100042642-100042907(-)$1	1	47	57	13.9215
)).((((...	chr16:4744605-4744865(+)$1	1	103	113	18.7254
....))))))	chr6:3269394-3269634(-)$1	1	96	106	14.2156
.)))))))))	chr1:235813044-235813305(-)$1	1	105	115	16.7647
)))))).(((	chr19:1471120-1471336(-)$1	1	157	167	14.8039
((........	chr17:55333767-55334048(+)$1	1	24	34	15.3921
))))))((((	chr7:50850154-50850398(-)$1	1	112	122	14.8039
(((((((...	chr16:75144681-75144949(+)$1	1	101	111	18.6274
..)))..)))	chr16:87734007-87734252(-)$1	1	213	223	15.1960
.).)))))))	chr7:127671506-127671786(+)$1	1	262	272	16.1764
.).).)))).	chr14:54421079-54421337(-)$1	1	56	66	14.0196
(((...((((	chr2:241568939-241569209(+)$1	1	120	130	16.9607
)))).)))).	chr6:111196677-111196925(+)$1	1	41	51	16.5686
)))))).)))	chr19:2425974-2426200(-)$1	1	38	48	16.5686
((........	chr17:38375805-38376225(+)$1	1	161	171	17.4509
).))))).))	chr6:41701884-41702153(-)$1	1	253	263	15.1960
((.(((.(((	chr10:697069-697326(-)$1	1	32	42	13.6274
(..(((((((	chr19:1275264-1275561(+)$1	1	13	23	15.2941
(((((((...	chr3:39194939-39195207(-)$1	1	10	20	16.5686
.)))))))))	chr22:38691291-38691553(-)$1	1	226	236	13.9215
).((.(((((	chr16:75284562-75284829(-)$1	1	27	37	13.6274
)).))).)))	chr17:45772876-45773107(+)$1	1	204	214	19.0196
.((((.....	chr11:404718-404987(+)$1	1	86	96	14.3137
....((((((	chr19:17354974-17355291(-)$1	1	66	76	19.1176
..(((((((.	chr17:34058587-34058865(+)$1	1	108	118	14.7058

#PSSM
C : 0.80	c : 0.09	G : 0.05	A : 0.03	
U : 0.56	C : 0.19	G : 0.11	u : 0.05	g : 0.01	c : 0.01	A : 0.01	
G : 0.86	g : 0.11	A : 0.01	
G : 0.84	g : 0.09	C : 0.01	a : 0.01	A : 0.01	
G : 0.82	g : 0.13	U : 0.01	A : 0.01	
G : 0.74	g : 0.13	C : 0.11	
U : 0.52	A : 0.21	C : 0.11	u : 0.03	a : 0.03	G : 0.01	g : 0.01	c : 0.01	
G : 0.74	g : 0.11	U : 0.07	C : 0.03	c : 0.01	
G : 0.76	g : 0.13	C : 0.05	U : 0.01	A : 0.01	
G : 0.41	C : 0.19	A : 0.15	g : 0.11	U : 0.09	a : 0.01	

#score	811.764705882354
#seq	51
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_UTR_m2_run1.nuc.txt

#NT
GGGAGG	chr17:74380105-74380331(+)$1	226	5	11	15.4657
GGGAGC	chr17:74379908-74380155(+)$1	247	192	198	14.4383
GGGAGC	chr7:5463047-5463306(-)$1	259	0	6	14.4383
GGGAGC	chr8:144679194-144679447(-)$1	253	166	172	14.4383
GGGAGC	chr3:49044987-49045247(+)$1	260	112	118	14.4383
GGGAGG	chr22:39916980-39917260(+)$1	280	242	248	15.4657
GGGAGA	chr17:79860483-79860800(-)$1	317	77	83	13.8904
GGGAGC	chr16:4661151-4661403(-)$1	252	16	22	14.4383
GGGAGG	chr2:242673993-242674363(+)$1	370	233	239	15.4657
GGGAGG	chr20:57267737-57268015(+)$1	278	90	96	15.4657
GGGAGG	chr7:1577316-1577592(+)$1	276	132	138	15.4657
gggaga	chr16:725992-726263(+)$1	271	27	33	13.8904
GGGAGC	chr17:74380011-74380288(+)$1	277	89	95	14.4383
GGGAGG	chr8:103424361-103424610(-)$1	249	44	50	15.4657
GGGAGA	chr17:7211174-7211424(+)$1	250	148	154	13.8904
GGGAGC	chr7:127670459-127670707(+)$1	248	175	181	14.4383
GGGAGG	chr19:54971450-54971702(+)$1	252	109	115	15.4657
GGGAGG	chr16:4664131-4664440(-)$1	309	267	273	15.4657
GGGAGA	chr17:74380179-74380432(+)$1	253	122	128	13.8904
GGGAGC	chr19:2270197-2270429(+)$1	232	127	133	14.4383
gggaga	chr8:30669833-30670093(-)$1	260	54	60	13.8904
GGGAGA	chr13:24153372-24153631(+)$1	259	139	145	13.8904
GGGAgg	chr11:3013154-3013467(-)$1	313	23	29	15.4657
GGGAGC	chr17:79859699-79859935(-)$1	236	10	16	14.4383
GGGAGG	chr3:195635834-195636067(-)$1	233	107	113	15.4657
GGGAGA	chr17:48542230-48542508(+)$1	278	93	99	13.8904
gggagg	chr2:242447571-242447832(-)$1	261	12	18	15.4657
GGGAGG	chr3:195635691-195635953(-)$1	262	68	74	15.4657
gggagg	chr16:4660955-4661201(-)$1	246	7	13	15.4657
GGGAGG	chr14:32546358-32546650(+)$1	292	26	32	15.4657
gggagc	chr11:18034155-18034429(-)$1	274	68	74	14.4383
GGGAGC	chr19:42758624-42758904(-)$1	280	261	267	14.4383
gggaga	chr11:843229-843445(+)$1	216	179	185	13.8904
GGGAGU	chr16:2551226-2551479(+)$1	253	37	43	13.2054
gggagg	chr19:34287643-34287903(+)$1	260	1	7	15.4657
GGGAGG	chr20:62330639-62330887(-)$1	248	192	198	15.4657
GGGAGC	chr11:842825-843110(+)$1	285	54	60	14.4383
GGGAGU	chr16:2579966-2580205(+)$1	239	53	59	13.2054
GGGAGA	chr8:22224856-22225153(+)$1	297	250	256	13.8904
GGGAGA	chr8:22224983-22225300(+)$1	317	123	129	13.8904
GGGAGG	chr5:179248476-179248793(+)$1	317	123	129	15.4657
GGGAGA	chr17:80192804-80193051(+)$1	247	15	21	13.8904
GGGAGG	chr22:41488522-41488777(+)$1	255	4	10	15.4657
GGGAGC	chr22:41488086-41488355(+)$1	269	122	128	14.4383
GGGAGG	chr19:1473975-1474223(-)$1	248	108	114	15.4657
GGGAGC	chr17:79860843-79861134(-)$1	291	90	96	14.4383
GGGAGG	chr16:2029100-2029389(+)$1	289	99	105	15.4657
GGGAGC	chr2:85766911-85767161(+)$1	250	52	58	14.4383
GGGAGG	chr17:79859880-79860152(-)$1	272	103	109	15.4657
GGGAGC	chr2:242707695-242707973(+)$1	278	29	35	14.4383
GGGAGA	chr19:1470187-1470438(-)$1	251	192	198	13.8904
gggagg	chr9:130331109-130331381(-)$1	272	18	24	15.4657
GGGAGG	chr17:80193051-80193295(+)$1	244	100	106	15.4657
gggagc	chr3:13461595-13461878(-)$1	283	83	89	14.4383
GGGAGG	chr5:138629655-138629972(+)$1	317	73	79	15.4657
gggagc	chr11:849856-850118(+)$1	262	69	75	14.4383
gggagc	chr19:3062250-3062523(-)$1	273	71	77	14.4383
GGGAGG	chr21:46933935-46934215(-)$1	280	135	141	15.4657
GGGAGG	chr3:48470759-48471037(-)$1	278	218	224	15.4657
GGGAGG	chr16:2579832-2580060(+)$1	228	94	100	15.4657
GGGAGG	chr16:89786879-89787178(-)$1	299	70	76	15.4657
GGGAGG	chr17:79861189-79861472(-)$1	283	121	127	15.4657
GGGAGG	chr17:79860000-79860248(-)$1	248	199	205	15.4657
GGGAGG	chr12:133405090-133405349(-)$1	259	37	43	15.4657
GGGAgg	chr17:79860162-79860406(-)$1	244	39	45	15.4657
GGGAGA	chr16:4661260-4661484(-)$1	224	41	47	13.8904
GGGAGG	chr17:80192373-80192681(+)$1	308	156	162	15.4657
gggagg	chr17:41622773-41623039(+)$1	266	79	85	15.4657
GGGAGC	chr12:123755359-123755634(-)$1	275	148	154	14.4383
GGGAGU	chr17:7477036-7477311(+)$1	275	86	92	13.2054
GGGAGG	chr16:53165002-53165291(+)$1	289	14	20	15.4657
gggagc	chr20:35491842-35492135(-)$1	293	73	79	14.4383

#otherMatches

#Struct PSSM
gggggg	chr8:101963107-101963384(-)$1	277	31	37	15.4657
::::::	chr17:74380105-74380331(+)$1	226	5	11	15.4657
hmmmmh	chr17:74379908-74380155(+)$1	247	192	198	14.4383
hhhhhh	chr7:5463047-5463306(-)$1	259	0	6	14.4383
f[ccco	chr8:144679194-144679447(-)$1	253	166	172	14.4383
NBB{FF	chr3:49044987-49045247(+)$1	260	112	118	14.4383
gggbb!	chr22:39916980-39917260(+)$1	280	242	248	15.4657
eee:ee	chr17:79860483-79860800(-)$1	317	77	83	13.8904
bb[ddd	chr16:4661151-4661403(-)$1	252	16	22	14.4383
oooa]c	chr2:242673993-242674363(+)$1	370	233	239	15.4657
ff333=	chr20:57267737-57268015(+)$1	278	90	96	15.4657
nnnna]	chr7:1577316-1577592(+)$1	276	132	138	15.4657
EEEEE{	chr16:725992-726263(+)$1	271	27	33	13.8904
hmmmmh	chr17:74380011-74380288(+)$1	277	89	95	14.4383
[a[bb[	chr8:103424361-103424610(-)$1	249	44	50	15.4657
ddoooo	chr17:7211174-7211424(+)$1	250	148	154	13.8904
dd22ee	chr7:127670459-127670707(+)$1	248	175	181	14.4383
JJJJJf	chr19:54971450-54971702(+)$1	252	109	115	15.4657
DBB}EE	chr16:4664131-4664440(-)$1	309	267	273	15.4657
a[gggg	chr17:74380179-74380432(+)$1	253	122	128	13.8904
mmmmdd	chr19:2270197-2270429(+)$1	232	127	133	14.4383
ccc[a!	chr8:30669833-30670093(-)$1	260	54	60	13.8904
ddd:::	chr13:24153372-24153631(+)$1	259	139	145	13.8904
JJ{BB:	chr11:3013154-3013467(-)$1	313	23	29	15.4657
ccc[bb	chr17:79859699-79859935(-)$1	236	10	16	14.4383
eeqqqq	chr3:195635834-195636067(-)$1	233	107	113	15.4657
gggggg	chr17:48542230-48542508(+)$1	278	93	99	13.8904
BBLLLB	chr2:242447571-242447832(-)$1	261	12	18	15.4657
bb:bb!	chr3:195635691-195635953(-)$1	262	68	74	15.4657
bb!!ee	chr16:4660955-4661201(-)$1	246	7	13	15.4657
::::::	chr14:32546358-32546650(+)$1	292	26	32	15.4657
]bb22c	chr11:18034155-18034429(-)$1	274	68	74	14.4383
CCHHHH	chr19:42758624-42758904(-)$1	280	261	267	14.4383
bb]ddd	chr11:843229-843445(+)$1	216	179	185	13.8904
gggggg	chr16:2551226-2551479(+)$1	253	37	43	13.2054
:DDDDK	chr19:34287643-34287903(+)$1	260	1	7	15.4657
GGGGGG	chr20:62330639-62330887(-)$1	248	192	198	15.4657
dbb[bb	chr11:842825-843110(+)$1	285	54	60	14.4383
hhhhhh	chr16:2579966-2580205(+)$1	239	53	59	13.2054
cccc[e	chr8:22224856-22225153(+)$1	297	250	256	13.8904
cccc[e	chr8:22224983-22225300(+)$1	317	123	129	13.8904
a####b	chr5:179248476-179248793(+)$1	317	123	129	15.4657
EEEEEF	chr17:80192804-80193051(+)$1	247	15	21	13.8904
:HHHHH	chr22:41488522-41488777(+)$1	255	4	10	15.4657
fff[bb	chr22:41488086-41488355(+)$1	269	122	128	14.4383
dGGGGG	chr19:1473975-1474223(-)$1	248	108	114	15.4657
ffffff	chr17:79860843-79861134(-)$1	291	90	96	14.4383
g"""ee	chr16:2029100-2029389(+)$1	289	99	105	15.4657
fffff[	chr2:85766911-85767161(+)$1	250	52	58	14.4383
A{CCC{	chr17:79859880-79860152(-)$1	272	103	109	15.4657
pa]hhh	chr2:242707695-242707973(+)$1	278	29	35	14.4383
ddddpp	chr19:1470187-1470438(-)$1	251	192	198	13.8904
DD::::	chr9:130331109-130331381(-)$1	272	18	24	15.4657
[ggggg	chr17:80193051-80193295(+)$1	244	100	106	15.4657
ggg]bb	chr3:13461595-13461878(-)$1	283	83	89	14.4383
H{A:::	chr5:138629655-138629972(+)$1	317	73	79	15.4657
####bb	chr11:849856-850118(+)$1	262	69	75	14.4383
e22bb]	chr19:3062250-3062523(-)$1	273	71	77	14.4383
c]aggg	chr21:46933935-46934215(-)$1	280	135	141	15.4657
cc====	chr3:48470759-48471037(-)$1	278	218	224	15.4657
oooobb	chr16:2579832-2580060(+)$1	228	94	100	15.4657
====!!	chr16:89786879-89787178(-)$1	299	70	76	15.4657
hh++++	chr17:79861189-79861472(-)$1	283	121	127	15.4657
cc333f	chr17:79860000-79860248(-)$1	248	199	205	15.4657
iii:CC	chr12:133405090-133405349(-)$1	259	37	43	15.4657
gg:::b	chr17:79860162-79860406(-)$1	244	39	45	15.4657
FIIIII	chr16:4661260-4661484(-)$1	224	41	47	13.8904
!!gggg	chr17:80192373-80192681(+)$1	308	156	162	15.4657
FFFFFL	chr17:41622773-41623039(+)$1	266	79	85	15.4657
bb!!gg	chr12:123755359-123755634(-)$1	275	148	154	14.4383
3ccc]b	chr17:7477036-7477311(+)$1	275	86	92	13.2054
ddpppp	chr16:53165002-53165291(+)$1	289	14	20	15.4657
qqqqqq	chr20:35491842-35492135(-)$1	293	73	79	14.4383

#DB
((((((	chr8:101963107-101963384(-)$1	1	31	37	15.4657
......	chr17:74380105-74380331(+)$1	1	5	11	15.4657
(....)	chr17:74379908-74380155(+)$1	1	192	198	14.4383
((((((	chr7:5463047-5463306(-)$1	1	0	6	14.4383
(.(((.	chr8:144679194-144679447(-)$1	1	166	172	14.4383
.((.((	chr3:49044987-49045247(+)$1	1	112	118	14.4383
(((((.	chr22:39916980-39917260(+)$1	1	242	248	15.4657
))).((	chr17:79860483-79860800(-)$1	1	77	83	13.8904
((.(((	chr16:4661151-4661403(-)$1	1	16	22	14.4383
...).)	chr2:242673993-242674363(+)$1	1	233	239	15.4657
))...)	chr20:57267737-57268015(+)$1	1	90	96	15.4657
....).	chr7:1577316-1577592(+)$1	1	132	138	15.4657
(((((.	chr16:725992-726263(+)$1	1	27	33	13.8904
(....)	chr17:74380011-74380288(+)$1	1	89	95	14.4383
.(.((.	chr8:103424361-103424610(-)$1	1	44	50	15.4657
((....	chr17:7211174-7211424(+)$1	1	148	154	13.8904
))..))	chr7:127670459-127670707(+)$1	1	175	181	14.4383
((((((	chr19:54971450-54971702(+)$1	1	109	115	15.4657
))).))	chr16:4664131-4664440(-)$1	1	267	273	15.4657
(.((((	chr17:74380179-74380432(+)$1	1	122	128	13.8904
....))	chr19:2270197-2270429(+)$1	1	127	133	14.4383
(((.(.	chr8:30669833-30670093(-)$1	1	54	60	13.8904
)))...	chr13:24153372-24153631(+)$1	1	139	145	13.8904
((.((.	chr11:3013154-3013467(-)$1	1	23	29	15.4657
(((.((	chr17:79859699-79859935(-)$1	1	10	16	14.4383
((....	chr3:195635834-195636067(-)$1	1	107	113	15.4657
((((((	chr17:48542230-48542508(+)$1	1	93	99	13.8904
((...(	chr2:242447571-242447832(-)$1	1	12	18	15.4657
)).((.	chr3:195635691-195635953(-)$1	1	68	74	15.4657
((..((	chr16:4660955-4661201(-)$1	1	7	13	15.4657
......	chr14:32546358-32546650(+)$1	1	26	32	15.4657
.))..)	chr11:18034155-18034429(-)$1	1	68	74	14.4383
))))))	chr19:42758624-42758904(-)$1	1	261	267	14.4383
)).)))	chr11:843229-843445(+)$1	1	179	185	13.8904
))))))	chr16:2551226-2551479(+)$1	1	37	43	13.2054
.((((.	chr19:34287643-34287903(+)$1	1	1	7	15.4657
))))))	chr20:62330639-62330887(-)$1	1	192	198	15.4657
(((.((	chr11:842825-843110(+)$1	1	54	60	14.4383
((((((	chr16:2579966-2580205(+)$1	1	53	59	13.2054
((((.(	chr8:22224856-22225153(+)$1	1	250	256	13.8904
((((.(	chr8:22224983-22225300(+)$1	1	123	129	13.8904
(....(	chr5:179248476-179248793(+)$1	1	123	129	15.4657
((((((	chr17:80192804-80193051(+)$1	1	15	21	13.8904
.(((((	chr22:41488522-41488777(+)$1	1	4	10	15.4657
(((.((	chr22:41488086-41488355(+)$1	1	122	128	14.4383
)(((((	chr19:1473975-1474223(-)$1	1	108	114	15.4657
))))))	chr17:79860843-79861134(-)$1	1	90	96	14.4383
(...((	chr16:2029100-2029389(+)$1	1	99	105	15.4657
(((((.	chr2:85766911-85767161(+)$1	1	52	58	14.4383
(.(((.	chr17:79859880-79860152(-)$1	1	103	109	15.4657
.).)))	chr2:242707695-242707973(+)$1	1	29	35	14.4383
((((..	chr19:1470187-1470438(-)$1	1	192	198	13.8904
((....	chr9:130331109-130331381(-)$1	1	18	24	15.4657
.(((((	chr17:80193051-80193295(+)$1	1	100	106	15.4657
))).))	chr3:13461595-13461878(-)$1	1	83	89	14.4383
(.(...	chr5:138629655-138629972(+)$1	1	73	79	15.4657
....((	chr11:849856-850118(+)$1	1	69	75	14.4383
)..)).	chr19:3062250-3062523(-)$1	1	71	77	14.4383
).))))	chr21:46933935-46934215(-)$1	1	135	141	15.4657
((((((	chr3:48470759-48471037(-)$1	1	218	224	15.4657
....))	chr16:2579832-2580060(+)$1	1	94	100	15.4657
((((..	chr16:89786879-89787178(-)$1	1	70	76	15.4657
((....	chr17:79861189-79861472(-)$1	1	121	127	15.4657
))...)	chr17:79860000-79860248(-)$1	1	199	205	15.4657
))).((	chr12:133405090-133405349(-)$1	1	37	43	15.4657
))...(	chr17:79860162-79860406(-)$1	1	39	45	15.4657
((((((	chr16:4661260-4661484(-)$1	1	41	47	13.8904
..((((	chr17:80192373-80192681(+)$1	1	156	162	15.4657
(((((.	chr17:41622773-41623039(+)$1	1	79	85	15.4657
((..((	chr12:123755359-123755634(-)$1	1	148	154	14.4383
.))).)	chr17:7477036-7477311(+)$1	1	86	92	13.2054
((....	chr16:53165002-53165291(+)$1	1	14	20	15.4657
......	chr20:35491842-35492135(-)$1	1	73	79	14.4383

#PSSM
G : 0.82	g : 0.17	
G : 0.82	g : 0.17	
G : 0.82	g : 0.17	
A : 0.82	a : 0.17	
G : 0.79	g : 0.20	
G : 0.39	C : 0.21	A : 0.13	g : 0.09	c : 0.06	a : 0.04	U : 0.04	

#score	1080.1643835616455
#seq	73
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_UTR_m2_run2.nuc.txt

#NT
CUC	chr1:27632862-27633192(+)$1	330	15	18	9.0000
cuc	chr5:79923370-79923653(-)$1	283	218	221	9.0000
CUC	chr20:55984063-55984411(+)$1	348	166	169	9.0000
CUC	chr12:121138206-121138435(+)$1	229	86	89	9.0000
CUC	chr3:15296669-15296936(-)$1	267	168	171	9.0000
CUC	chr17:33334221-33334473(+)$1	252	5	8	9.0000
CUC	chr20:61920390-61920693(+)$1	303	1	4	9.0000
CUC	chr10:75010307-75010547(-)$1	240	59	62	9.0000
CUC	chr22:31678397-31678685(-)$1	288	92	95	9.0000
CUC	chr20:61919356-61919627(+)$1	271	102	105	9.0000
CUC	chr11:60898717-60898997(-)$1	280	33	36	9.0000
CUC	chr8:145162062-145162374(+)$1	312	27	30	9.0000
CUC	chr19:1577488-1577762(-)$1	274	25	28	9.0000
CUC	chr16:58055022-58055274(+)$1	252	26	29	9.0000
CUC	chr5:141000456-141000713(-)$1	257	36	39	9.0000
CUC	chr22:41641868-41642085(-)$1	217	11	14	9.0000
CUC	chr17:42088555-42088805(-)$1	250	23	26	9.0000
CUC	chr17:80201110-80201358(-)$1	248	224	227	9.0000
CUC	chr17:57281319-57281546(+)$1	227	85	88	9.0000
CUC	chrX:103436659-103436898(+)$1	239	139	142	9.0000
CUC	chr1:16563353-16563638(-)$1	285	197	200	9.0000
cuc	chr10:101992598-101992843(-)$1	245	3	6	9.0000
CUC	chr20:62330863-62331116(-)$1	253	47	50	9.0000
cuc	chr16:29681254-29681546(+)$1	292	86	89	9.0000
CUC	chr2:242384250-242384503(+)$1	253	8	11	9.0000
CUC	chr17:79640446-79640728(+)$1	282	26	29	9.0000
CUC	chr1:183905510-183905764(-)$1	254	143	146	9.0000
CUC	chr3:48787881-48788136(-)$1	255	18	21	9.0000
CUC	chr12:51636841-51637075(+)$1	234	29	32	9.0000
cuc	chrX:150576360-150576607(+)$1	247	69	72	9.0000
cuc	chr7:65618372-65618644(+)$1	272	19	22	9.0000
CUC	chr1:38174496-38174757(+)$1	261	3	6	9.0000
CUC	chr20:62271939-62272211(-)$1	272	91	94	9.0000
CUC	chr15:89442242-89442512(-)$1	270	26	29	9.0000
CUC	chr20:32868227-32868484(-)$1	257	134	137	9.0000
CUC	chr15:64975862-64976129(+)$1	267	45	48	9.0000
CUC	chr10:74035549-74035755(+)$1	206	97	100	9.0000
CUC	chr9:133761394-133761682(+)$1	288	42	45	9.0000
CUC	chr11:63722811-63723064(+)$1	253	3	6	9.0000
CUC	chr8:37701382-37701674(-)$1	292	17	20	9.0000
CUC	chr19:12778804-12779171(-)$1	367	111	114	9.0000
CUC	chr1:28218000-28218286(-)$1	286	19	22	9.0000
cuc	chr17:40555742-40555981(-)$1	239	128	131	9.0000
CUC	chr11:71808448-71808721(-)$1	273	52	55	9.0000
cuc	chr13:113537348-113537658(+)$1	310	6	9	9.0000
CUC	chrX:70323044-70323296(+)$1	252	142	145	9.0000
CUC	chr7:44617895-44618133(-)$1	238	3	6	9.0000
CUC	chr19:10427083-10427382(-)$1	299	16	19	9.0000
CUC	chr10:98984574-98984846(-)$1	272	1	4	9.0000
CUC	chr5:132093518-132093785(-)$1	267	88	91	9.0000
CUC	chr6:3114318-3114568(+)$1	250	166	169	9.0000
CUC	chr17:73316051-73316270(-)$1	219	59	62	9.0000
CUC	chr10:71911953-71912182(-)$1	229	11	14	9.0000
cuc	chr20:62589929-62590176(-)$1	247	88	91	9.0000
CUC	chr2:10567478-10567753(+)$1	275	29	32	9.0000
CUC	chr10:22825024-22825280(-)$1	256	93	96	9.0000
CUC	chr19:41937783-41938077(-)$1	294	1	4	9.0000
CUC	chr19:18475670-18475891(+)$1	221	63	66	9.0000
CUC	chr17:40177028-40177282(+)$1	254	13	16	9.0000
CUC	chr1:55530274-55530525(+)$1	251	59	62	9.0000
CUC	chr17:47677390-47677667(-)$1	277	27	30	9.0000
CUC	chr22:41996399-41996696(-)$1	297	29	32	9.0000
CUC	chr10:74093902-74094173(-)$1	271	17	20	9.0000
CUC	chr12:120898302-120898549(+)$1	247	73	76	9.0000
CUC	chr19:39669563-39669806(+)$1	243	70	73	9.0000
CUC	chr17:80213207-80213442(-)$1	235	75	78	9.0000
CUC	chr2:25042943-25043210(+)$1	267	7	10	9.0000
CUC	chr10:75878188-75878458(+)$1	270	26	29	9.0000
CUC	chr10:71910151-71910418(-)$1	267	42	45	9.0000
CUC	chrX:149932950-149933233(+)$1	283	153	156	9.0000
CUC	chr19:47712504-47712812(+)$1	308	5	8	9.0000
CUC	chr12:121158004-121158269(+)$1	265	181	184	9.0000
CUC	chr17:76671469-76671715(-)$1	246	58	61	9.0000
CUC	chr20:57020061-57020409(+)$1	348	14	17	9.0000
CUC	chr17:42271080-42271359(-)$1	279	156	159	9.0000
CUC	chr19:7978313-7978594(+)$1	281	73	76	9.0000
CUC	chr1:249143192-249143526(+)$1	334	11	14	9.0000
CUC	chr10:102122746-102122957(+)$1	211	31	34	9.0000
CUC	chr17:7342497-7342757(+)$1	260	184	187	9.0000
cuc	chr7:65618800-65619038(+)$1	238	77	80	9.0000
CUC	chr21:47609277-47609579(-)$1	302	9	12	9.0000
CUC	chr19:39220975-39221195(+)$1	220	19	22	9.0000
CUC	chr16:90071924-90072195(-)$1	271	33	36	9.0000
cuc	chr16:54146243-54146494(+)$1	251	82	85	9.0000
CUC	chr1:182352670-182352971(-)$1	301	222	225	9.0000
CUC	chr19:39875123-39875388(+)$1	265	39	42	9.0000
CUC	chr17:21145940-21146181(-)$1	241	47	50	9.0000
CUC	chr2:219138960-219139194(-)$1	234	15	18	9.0000
CUC	chr1:19543990-19544233(-)$1	243	196	199	9.0000
CUC	chr1:183522774-183523037(+)$1	263	96	99	9.0000
CUC	chr4:140309426-140309692(+)$1	266	68	71	9.0000
CUC	chr5:132092795-132093042(-)$1	247	46	49	9.0000
CUC	chr1:154951492-154951750(+)$1	258	10	13	9.0000
CUC	chr3:39438496-39438767(+)$1	271	31	34	9.0000
CUC	chr19:18977616-18977836(+)$1	220	8	11	9.0000
CUC	chr11:3696499-3696830(-)$1	331	141	144	9.0000
CUC	chr10:71160888-71161110(+)$1	222	28	31	9.0000

#otherMatches

#Struct PSSM
eee	chr9:131152377-131152670(+)$1	293	60	63	9.0000
HHH	chr1:27632862-27633192(+)$1	330	15	18	9.0000
ee:	chr5:79923370-79923653(-)$1	283	218	221	9.0000
eee	chr20:55984063-55984411(+)$1	348	166	169	9.0000
===	chr12:121138206-121138435(+)$1	229	86	89	9.0000
HHH	chr3:15296669-15296936(-)$1	267	168	171	9.0000
gg!	chr17:33334221-33334473(+)$1	252	5	8	9.0000
FFF	chr20:61920390-61920693(+)$1	303	1	4	9.0000
ddd	chr10:75010307-75010547(-)$1	240	59	62	9.0000
4ee	chr22:31678397-31678685(-)$1	288	92	95	9.0000
h44	chr20:61919356-61919627(+)$1	271	102	105	9.0000
ee!	chr11:60898717-60898997(-)$1	280	33	36	9.0000
JJJ	chr8:145162062-145162374(+)$1	312	27	30	9.0000
qqq	chr19:1577488-1577762(-)$1	274	25	28	9.0000
EEE	chr16:58055022-58055274(+)$1	252	26	29	9.0000
C::	chr5:141000456-141000713(-)$1	257	36	39	9.0000
bbc	chr22:41641868-41642085(-)$1	217	11	14	9.0000
dd2	chr17:42088555-42088805(-)$1	250	23	26	9.0000
e44	chr17:80201110-80201358(-)$1	248	224	227	9.0000
fff	chr17:57281319-57281546(+)$1	227	85	88	9.0000
mme	chrX:103436659-103436898(+)$1	239	139	142	9.0000
cee	chr1:16563353-16563638(-)$1	285	197	200	9.0000
KKB	chr10:101992598-101992843(-)$1	245	3	6	9.0000
bb]	chr20:62330863-62331116(-)$1	253	47	50	9.0000
DDD	chr16:29681254-29681546(+)$1	292	86	89	9.0000
:::	chr2:242384250-242384503(+)$1	253	8	11	9.0000
fff	chr17:79640446-79640728(+)$1	282	26	29	9.0000
ooo	chr1:183905510-183905764(-)$1	254	143	146	9.0000
hha	chr3:48787881-48788136(-)$1	255	18	21	9.0000
uuu	chr12:51636841-51637075(+)$1	234	29	32	9.0000
rrr	chrX:150576360-150576607(+)$1	247	69	72	9.0000
NNN	chr7:65618372-65618644(+)$1	272	19	22	9.0000
EEF	chr1:38174496-38174757(+)$1	261	3	6	9.0000
ooo	chr20:62271939-62272211(-)$1	272	91	94	9.0000
:::	chr15:89442242-89442512(-)$1	270	26	29	9.0000
ggg	chr20:32868227-32868484(-)$1	257	134	137	9.0000
eel	chr15:64975862-64976129(+)$1	267	45	48	9.0000
ee]	chr10:74035549-74035755(+)$1	206	97	100	9.0000
+++	chr9:133761394-133761682(+)$1	288	42	45	9.0000
:::	chr11:63722811-63723064(+)$1	253	3	6	9.0000
eee	chr8:37701382-37701674(-)$1	292	17	20	9.0000
dd]	chr19:12778804-12779171(-)$1	367	111	114	9.0000
III	chr1:28218000-28218286(-)$1	286	19	22	9.0000
BDD	chr17:40555742-40555981(-)$1	239	128	131	9.0000
ddd	chr11:71808448-71808721(-)$1	273	52	55	9.0000
:::	chr13:113537348-113537658(+)$1	310	6	9	9.0000
eee	chrX:70323044-70323296(+)$1	252	142	145	9.0000
bb[	chr7:44617895-44618133(-)$1	238	3	6	9.0000
qqq	chr19:10427083-10427382(-)$1	299	16	19	9.0000
CC{	chr10:98984574-98984846(-)$1	272	1	4	9.0000
ncc	chr5:132093518-132093785(-)$1	267	88	91	9.0000
eee	chr6:3114318-3114568(+)$1	250	166	169	9.0000
ddd	chr17:73316051-73316270(-)$1	219	59	62	9.0000
HHH	chr10:71911953-71912182(-)$1	229	11	14	9.0000
ggm	chr20:62589929-62590176(-)$1	247	88	91	9.0000
CCC	chr2:10567478-10567753(+)$1	275	29	32	9.0000
:ee	chr10:22825024-22825280(-)$1	256	93	96	9.0000
:::	chr19:41937783-41938077(-)$1	294	1	4	9.0000
ggb	chr19:18475670-18475891(+)$1	221	63	66	9.0000
##a	chr17:40177028-40177282(+)$1	254	13	16	9.0000
fff	chr1:55530274-55530525(+)$1	251	59	62	9.0000
ddd	chr17:47677390-47677667(-)$1	277	27	30	9.0000
e44	chr22:41996399-41996696(-)$1	297	29	32	9.0000
FFF	chr10:74093902-74094173(-)$1	271	17	20	9.0000
hhh	chr12:120898302-120898549(+)$1	247	73	76	9.0000
aqq	chr19:39669563-39669806(+)$1	243	70	73	9.0000
nne	chr17:80213207-80213442(-)$1	235	75	78	9.0000
DDD	chr2:25042943-25043210(+)$1	267	7	10	9.0000
JJJ	chr10:75878188-75878458(+)$1	270	26	29	9.0000
===	chr10:71910151-71910418(-)$1	267	42	45	9.0000
eee	chrX:149932950-149933233(+)$1	283	153	156	9.0000
:::	chr19:47712504-47712812(+)$1	308	5	8	9.0000
e::	chr12:121158004-121158269(+)$1	265	181	184	9.0000
eee	chr17:76671469-76671715(-)$1	246	58	61	9.0000
ddd	chr20:57020061-57020409(+)$1	348	14	17	9.0000
d[e	chr17:42271080-42271359(-)$1	279	156	159	9.0000
hhh	chr19:7978313-7978594(+)$1	281	73	76	9.0000
HHK	chr1:249143192-249143526(+)$1	334	11	14	9.0000
eee	chr10:102122746-102122957(+)$1	211	31	34	9.0000
ddd	chr17:7342497-7342757(+)$1	260	184	187	9.0000
ddd	chr7:65618800-65619038(+)$1	238	77	80	9.0000
ggg	chr21:47609277-47609579(-)$1	302	9	12	9.0000
ffm	chr19:39220975-39221195(+)$1	220	19	22	9.0000
ttt	chr16:90071924-90072195(-)$1	271	33	36	9.0000
g$$	chr16:54146243-54146494(+)$1	251	82	85	9.0000
ddd	chr1:182352670-182352971(-)$1	301	222	225	9.0000
JJJ	chr19:39875123-39875388(+)$1	265	39	42	9.0000
g[c	chr17:21145940-21146181(-)$1	241	47	50	9.0000
ee:	chr2:219138960-219139194(-)$1	234	15	18	9.0000
HHH	chr1:19543990-19544233(-)$1	243	196	199	9.0000
>>>	chr1:183522774-183523037(+)$1	263	96	99	9.0000
:::	chr4:140309426-140309692(+)$1	266	68	71	9.0000
enn	chr5:132092795-132093042(-)$1	247	46	49	9.0000
Fdd	chr1:154951492-154951750(+)$1	258	10	13	9.0000
LLD	chr3:39438496-39438767(+)$1	271	31	34	9.0000
cc"	chr19:18977616-18977836(+)$1	220	8	11	9.0000
lee	chr11:3696499-3696830(-)$1	331	141	144	9.0000
:BB	chr10:71160888-71161110(+)$1	222	28	31	9.0000

#DB
(((	chr9:131152377-131152670(+)$1	1	60	63	9.0000
(((	chr1:27632862-27633192(+)$1	1	15	18	9.0000
)).	chr5:79923370-79923653(-)$1	1	218	221	9.0000
)))	chr20:55984063-55984411(+)$1	1	166	169	9.0000
(((	chr12:121138206-121138435(+)$1	1	86	89	9.0000
)))	chr3:15296669-15296936(-)$1	1	168	171	9.0000
((.	chr17:33334221-33334473(+)$1	1	5	8	9.0000
(((	chr20:61920390-61920693(+)$1	1	1	4	9.0000
)))	chr10:75010307-75010547(-)$1	1	59	62	9.0000
.))	chr22:31678397-31678685(-)$1	1	92	95	9.0000
)..	chr20:61919356-61919627(+)$1	1	102	105	9.0000
((.	chr11:60898717-60898997(-)$1	1	33	36	9.0000
(((	chr8:145162062-145162374(+)$1	1	27	30	9.0000
...	chr19:1577488-1577762(-)$1	1	25	28	9.0000
(((	chr16:58055022-58055274(+)$1	1	26	29	9.0000
(..	chr5:141000456-141000713(-)$1	1	36	39	9.0000
(((	chr22:41641868-41642085(-)$1	1	11	14	9.0000
)).	chr17:42088555-42088805(-)$1	1	23	26	9.0000
)..	chr17:80201110-80201358(-)$1	1	224	227	9.0000
)))	chr17:57281319-57281546(+)$1	1	85	88	9.0000
..)	chrX:103436659-103436898(+)$1	1	139	142	9.0000
)((	chr1:16563353-16563638(-)$1	1	197	200	9.0000
..(	chr10:101992598-101992843(-)$1	1	3	6	9.0000
)).	chr20:62330863-62331116(-)$1	1	47	50	9.0000
)))	chr16:29681254-29681546(+)$1	1	86	89	9.0000
...	chr2:242384250-242384503(+)$1	1	8	11	9.0000
)))	chr17:79640446-79640728(+)$1	1	26	29	9.0000
...	chr1:183905510-183905764(-)$1	1	143	146	9.0000
(((	chr3:48787881-48788136(-)$1	1	18	21	9.0000
...	chr12:51636841-51637075(+)$1	1	29	32	9.0000
...	chrX:150576360-150576607(+)$1	1	69	72	9.0000
...	chr7:65618372-65618644(+)$1	1	19	22	9.0000
(((	chr1:38174496-38174757(+)$1	1	3	6	9.0000
...	chr20:62271939-62272211(-)$1	1	91	94	9.0000
...	chr15:89442242-89442512(-)$1	1	26	29	9.0000
)))	chr20:32868227-32868484(-)$1	1	134	137	9.0000
((.	chr15:64975862-64976129(+)$1	1	45	48	9.0000
)).	chr10:74035549-74035755(+)$1	1	97	100	9.0000
...	chr9:133761394-133761682(+)$1	1	42	45	9.0000
...	chr11:63722811-63723064(+)$1	1	3	6	9.0000
)))	chr8:37701382-37701674(-)$1	1	17	20	9.0000
)).	chr19:12778804-12779171(-)$1	1	111	114	9.0000
(((	chr1:28218000-28218286(-)$1	1	19	22	9.0000
)))	chr17:40555742-40555981(-)$1	1	128	131	9.0000
)))	chr11:71808448-71808721(-)$1	1	52	55	9.0000
...	chr13:113537348-113537658(+)$1	1	6	9	9.0000
)))	chrX:70323044-70323296(+)$1	1	142	145	9.0000
((.	chr7:44617895-44618133(-)$1	1	3	6	9.0000
...	chr19:10427083-10427382(-)$1	1	16	19	9.0000
((.	chr10:98984574-98984846(-)$1	1	1	4	9.0000
.))	chr5:132093518-132093785(-)$1	1	88	91	9.0000
)))	chr6:3114318-3114568(+)$1	1	166	169	9.0000
)))	chr17:73316051-73316270(-)$1	1	59	62	9.0000
(((	chr10:71911953-71912182(-)$1	1	11	14	9.0000
((.	chr20:62589929-62590176(-)$1	1	88	91	9.0000
(((	chr2:10567478-10567753(+)$1	1	29	32	9.0000
.((	chr10:22825024-22825280(-)$1	1	93	96	9.0000
...	chr19:41937783-41938077(-)$1	1	1	4	9.0000
)))	chr19:18475670-18475891(+)$1	1	63	66	9.0000
..(	chr17:40177028-40177282(+)$1	1	13	16	9.0000
)))	chr1:55530274-55530525(+)$1	1	59	62	9.0000
(((	chr17:47677390-47677667(-)$1	1	27	30	9.0000
)..	chr22:41996399-41996696(-)$1	1	29	32	9.0000
(((	chr10:74093902-74094173(-)$1	1	17	20	9.0000
(((	chr12:120898302-120898549(+)$1	1	73	76	9.0000
(..	chr19:39669563-39669806(+)$1	1	70	73	9.0000
..)	chr17:80213207-80213442(-)$1	1	75	78	9.0000
(((	chr2:25042943-25043210(+)$1	1	7	10	9.0000
(((	chr10:75878188-75878458(+)$1	1	26	29	9.0000
(((	chr10:71910151-71910418(-)$1	1	42	45	9.0000
(((	chrX:149932950-149933233(+)$1	1	153	156	9.0000
...	chr19:47712504-47712812(+)$1	1	5	8	9.0000
)..	chr12:121158004-121158269(+)$1	1	181	184	9.0000
(((	chr17:76671469-76671715(-)$1	1	58	61	9.0000
(((	chr20:57020061-57020409(+)$1	1	14	17	9.0000
(.(	chr17:42271080-42271359(-)$1	1	156	159	9.0000
)))	chr19:7978313-7978594(+)$1	1	73	76	9.0000
((.	chr1:249143192-249143526(+)$1	1	11	14	9.0000
)))	chr10:102122746-102122957(+)$1	1	31	34	9.0000
)))	chr17:7342497-7342757(+)$1	1	184	187	9.0000
(((	chr7:65618800-65619038(+)$1	1	77	80	9.0000
(((	chr21:47609277-47609579(-)$1	1	9	12	9.0000
((.	chr19:39220975-39221195(+)$1	1	19	22	9.0000
...	chr16:90071924-90072195(-)$1	1	33	36	9.0000
(..	chr16:54146243-54146494(+)$1	1	82	85	9.0000
(((	chr1:182352670-182352971(-)$1	1	222	225	9.0000
(((	chr19:39875123-39875388(+)$1	1	39	42	9.0000
(.(	chr17:21145940-21146181(-)$1	1	47	50	9.0000
)).	chr2:219138960-219139194(-)$1	1	15	18	9.0000
)))	chr1:19543990-19544233(-)$1	1	196	199	9.0000
...	chr1:183522774-183523037(+)$1	1	96	99	9.0000
...	chr4:140309426-140309692(+)$1	1	68	71	9.0000
(..	chr5:132092795-132093042(-)$1	1	46	49	9.0000
(((	chr1:154951492-154951750(+)$1	1	10	13	9.0000
..(	chr3:39438496-39438767(+)$1	1	31	34	9.0000
((.	chr19:18977616-18977836(+)$1	1	8	11	9.0000
.))	chr11:3696499-3696830(-)$1	1	141	144	9.0000
.((	chr10:71160888-71161110(+)$1	1	28	31	9.0000

#PSSM
C : 0.89	c : 0.10	
U : 0.89	u : 0.10	
C : 0.89	c : 0.10	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_CDS_m3_run1.nuc.txt

#NT
CCCUGGG	chr1:43212718-43212989(-)$1	271	220	227	13.1590
GCAUGGG	chrM:14235-14449(-)$1	214	15	22	13.3863
GACUGGG	chr7:73010686-73010948(-)$1	262	47	54	12.4772
GCCUGGU	chr11:67810675-67810936(+)$1	261	101	108	13.9545
UCCUGGG	chr1:156351927-156352197(+)$1	270	1	8	13.2727
GCCUAGG	chr20:56140285-56140521(+)$1	236	73	80	12.4772
GCCCGGG	chr6:37139166-37139392(+)$1	226	110	117	13.0454
GCCUGGG	chr19:46357608-46357893(-)$1	285	20	27	17.1363
GCAUGGG	chrM:14367-14600(-)$1	233	166	173	13.3863
ACCUGGG	chr17:4686007-4686270(+)$1	263	0	7	13.1590
GCCCGGG	chr22:50354825-50355088(+)$1	263	78	85	13.0454
GCCUGGC	chr20:2819566-2819827(-)$1	261	39	46	13.9545
GCUUGGG	chr17:80016426-80016720(-)$1	294	132	139	12.9318
GCCUGGC	chr16:67984010-67984326(-)$1	316	130	137	13.9545
GCCUGGG	chr9:135930323-135930613(+)$1	290	156	163	17.1363
GCCUGGU	chr16:67983707-67984038(-)$1	331	49	56	13.9545
ACCUGGG	chr3:48451341-48451548(-)$1	207	24	31	13.1590
GCCUUGG	chr17:27074221-27074456(+)$1	235	161	168	12.4772
GCCUGGA	chr20:62373115-62373359(+)$1	244	112	119	13.9545
GCCUGGG	chr9:139904666-139904966(-)$1	300	192	199	17.1363
GGCUGGG	chr1:1289508-1289782(-)$1	274	114	121	12.4772
GCCUGGG	chr16:67984709-67984966(-)$1	257	116	123	17.1363
GCCUGGG	chr1:11718441-11718755(+)$1	314	250	257	17.1363
GCCUGGG	chr9:140347388-140347614(-)$1	226	181	188	17.1363
GCCUGGA	chr14:35099049-35099318(-)$1	269	162	169	13.9545
CCCUGGG	chr7:100282732-100283073(-)$1	341	35	42	13.1590
GCCUGGG	chr3:48451382-48451604(-)$1	222	65	72	17.1363
UCCUGGG	chr17:73871336-73871584(-)$1	248	233	240	13.2727
UCCUGGG	chr20:56136586-56136834(+)$1	248	162	169	13.2727
GCCUGGG	chr20:61452781-61453044(+)$1	263	180	187	17.1363
GCCUGGU	chr6:134493183-134493437(-)$1	254	129	136	13.9545
GCCAGGG	chr1:44442124-44442392(+)$1	268	216	223	12.8181
GCCUGGA	chr19:1978465-1978720(+)$1	255	210	217	13.9545
GCAUGGG	chrM:14222-14435(-)$1	213	1	8	13.3863
GCCUGGC	chr16:72142227-72142502(+)$1	275	196	203	13.9545
GCAUGGG	chrM:14282-14501(-)$1	219	67	74	13.3863
GCCCGGG	chr7:142962095-142962413(+)$1	318	182	189	13.0454
GCCUGGU	chrX:153668587-153668866(+)$1	279	86	93	13.9545
GCCUGGG	chr20:56138169-56138419(+)$1	250	138	145	17.1363
GCCUGGC	chr14:35872778-35872996(-)$1	218	112	119	13.9545
GCCUGGG	chr16:67976993-67977279(-)$1	286	173	180	17.1363
GCCGGGG	chr20:60856116-60856361(+)$1	245	160	167	12.8181
GCAUGGG	chrM:14301-14514(-)$1	213	80	87	13.3863

#otherMatches

#Struct PSSM
ffff555	chr1:11718308-11718608(+)$1	300	33	40	13.9545
effffff	chr1:43212718-43212989(-)$1	271	220	227	13.1590
{BBKKFF	chrM:14235-14449(-)$1	214	15	22	13.3863
KKBBHHH	chr7:73010686-73010948(-)$1	262	47	54	12.4772
HHHH{FF	chr11:67810675-67810936(+)$1	261	101	108	13.9545
::::iii	chr1:156351927-156352197(+)$1	270	1	8	13.2727
cc:::bb	chr20:56140285-56140521(+)$1	236	73	80	12.4772
ddddbba	chr6:37139166-37139392(+)$1	226	110	117	13.0454
[dddd[e	chr19:46357608-46357893(-)$1	285	20	27	17.1363
fffCCC}	chrM:14367-14600(-)$1	233	166	173	13.3863
::JJJJJ	chr17:4686007-4686270(+)$1	263	0	7	13.1590
fffffFF	chr22:50354825-50355088(+)$1	263	78	85	13.0454
ccc[bb[	chr20:2819566-2819827(-)$1	261	39	46	13.9545
ffff::C	chr17:80016426-80016720(-)$1	294	132	139	12.9318
ggggggo	chr16:67984010-67984326(-)$1	316	130	137	13.9545
ccc]ddd	chr9:135930323-135930613(+)$1	290	156	163	17.1363
]ddddcc	chr16:67983707-67984038(-)$1	331	49	56	13.9545
eeeeooo	chr3:48451341-48451548(-)$1	207	24	31	13.1590
ddddeee	chr17:27074221-27074456(+)$1	235	161	168	12.4772
e]ccc33	chr20:62373115-62373359(+)$1	244	112	119	13.9545
ggggggg	chr9:139904666-139904966(-)$1	300	192	199	17.1363
d[ggggg	chr1:1289508-1289782(-)$1	274	114	121	12.4772
mmmdddd	chr16:67984709-67984966(-)$1	257	116	123	17.1363
eeeeeee	chr1:11718441-11718755(+)$1	314	250	257	17.1363
CC}DDDD	chr9:140347388-140347614(-)$1	226	181	188	17.1363
hh!!ddd	chr14:35099049-35099318(-)$1	269	162	169	13.9545
ccc[ccc	chr7:100282732-100283073(-)$1	341	35	42	13.1590
4cccddd	chr3:48451382-48451604(-)$1	222	65	72	17.1363
HHHHHHH	chr17:73871336-73871584(-)$1	248	233	240	13.2727
FFFF}GG	chr20:56136586-56136834(+)$1	248	162	169	13.2727
$$$$eee	chr20:61452781-61453044(+)$1	263	180	187	17.1363
d"""bbn	chr6:134493183-134493437(-)$1	254	129	136	13.9545
eeee:HH	chr1:44442124-44442392(+)$1	268	216	223	12.8181
cc[ffff	chr19:1978465-1978720(+)$1	255	210	217	13.9545
DDDD{AE	chrM:14222-14435(-)$1	213	1	8	13.3863
!ffffff	chr16:72142227-72142502(+)$1	275	196	203	13.9545
iiii###	chrM:14282-14501(-)$1	219	67	74	13.3863
mmmmeee	chr7:142962095-142962413(+)$1	318	182	189	13.0454
]ddddcc	chrX:153668587-153668866(+)$1	279	86	93	13.9545
f[dddd[	chr20:56138169-56138419(+)$1	250	138	145	17.1363
EKKFFFF	chr14:35872778-35872996(-)$1	218	112	119	13.9545
!!ddddq	chr16:67976993-67977279(-)$1	286	173	180	17.1363
CCa[iii	chr20:60856116-60856361(+)$1	245	160	167	12.8181
iiii###	chrM:14301-14514(-)$1	213	80	87	13.3863

#DB
))))...	chr1:11718308-11718608(+)$1	1	33	40	13.9545
(((((((	chr1:43212718-43212989(-)$1	1	220	227	13.1590
.((..((	chrM:14235-14449(-)$1	1	15	22	13.3863
..(((((	chr7:73010686-73010948(-)$1	1	47	54	12.4772
((((.((	chr11:67810675-67810936(+)$1	1	101	108	13.9545
....(((	chr1:156351927-156352197(+)$1	1	1	8	13.2727
))...((	chr20:56140285-56140521(+)$1	1	73	80	12.4772
))))(((	chr6:37139166-37139392(+)$1	1	110	117	13.0454
.((((.(	chr19:46357608-46357893(-)$1	1	20	27	17.1363
)))))).	chrM:14367-14600(-)$1	1	166	173	13.3863
..(((((	chr17:4686007-4686270(+)$1	1	0	7	13.1590
)))))((	chr22:50354825-50355088(+)$1	1	78	85	13.0454
(((.((.	chr20:2819566-2819827(-)$1	1	39	46	13.9545
))))..)	chr17:80016426-80016720(-)$1	1	132	139	12.9318
((((((.	chr16:67984010-67984326(-)$1	1	130	137	13.9545
))).)))	chr9:135930323-135930613(+)$1	1	156	163	17.1363
.))))((	chr16:67983707-67984038(-)$1	1	49	56	13.9545
((((...	chr3:48451341-48451548(-)$1	1	24	31	13.1590
(((((((	chr17:27074221-27074456(+)$1	1	161	168	12.4772
).)))..	chr20:62373115-62373359(+)$1	1	112	119	13.9545
(((((((	chr9:139904666-139904966(-)$1	1	192	199	17.1363
(.(((((	chr1:1289508-1289782(-)$1	1	114	121	12.4772
...))))	chr16:67984709-67984966(-)$1	1	116	123	17.1363
))))(((	chr1:11718441-11718755(+)$1	1	250	257	17.1363
)).))))	chr9:140347388-140347614(-)$1	1	181	188	17.1363
((..(((	chr14:35099049-35099318(-)$1	1	162	169	13.9545
(((.(((	chr7:100282732-100283073(-)$1	1	35	42	13.1590
.))))))	chr3:48451382-48451604(-)$1	1	65	72	17.1363
)))))))	chr17:73871336-73871584(-)$1	1	233	240	13.2727
)))).))	chr20:56136586-56136834(+)$1	1	162	169	13.2727
....(((	chr20:61452781-61453044(+)$1	1	180	187	17.1363
(...((.	chr6:134493183-134493437(-)$1	1	129	136	13.9545
)))).))	chr1:44442124-44442392(+)$1	1	216	223	12.8181
((.((((	chr19:1978465-1978720(+)$1	1	210	217	13.9545
((((.((	chrM:14222-14435(-)$1	1	1	8	13.3863
.((((((	chr16:72142227-72142502(+)$1	1	196	203	13.9545
((((...	chrM:14282-14501(-)$1	1	67	74	13.3863
....)))	chr7:142962095-142962413(+)$1	1	182	189	13.0454
.))))((	chrX:153668587-153668866(+)$1	1	86	93	13.9545
(.((((.	chr20:56138169-56138419(+)$1	1	138	145	17.1363
(..((((	chr14:35872778-35872996(-)$1	1	112	119	13.9545
..((((.	chr16:67976993-67977279(-)$1	1	173	180	17.1363
(((.(((	chr20:60856116-60856361(+)$1	1	160	167	12.8181
((((...	chrM:14301-14514(-)$1	1	80	87	13.3863

#PSSM
G : 0.84	U : 0.06	C : 0.04	A : 0.04	
C : 0.95	A : 0.02	G : 0.02	
C : 0.86	A : 0.11	U : 0.02	
U : 0.88	C : 0.06	A : 0.02	G : 0.02	
G : 0.95	A : 0.02	U : 0.02	
G : 0.99	
G : 0.72	A : 0.09	U : 0.09	C : 0.09	

#score	625.8181818181814
#seq	44
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_CDS_m1_run1.nuc.txt

#NT
GCU	chr8:145729949-145730203(-)$1	254	11	14	9.0000
GCU	chr21:46954417-46954715(-)$1	298	38	41	9.0000
GCU	chr19:2270419-2270680(+)$1	261	73	76	9.0000
GCU	chr10:49659492-49659801(-)$1	309	6	9	9.0000
GCU	chr11:62289984-62290239(-)$1	255	181	184	9.0000
GCU	chr1:205718996-205719247(-)$1	251	23	26	9.0000
GCU	chr19:3530587-3530907(+)$1	320	158	161	9.0000
gcu	chr11:2405685-2406015(+)$1	330	5	8	9.0000
GCU	chr22:30732916-30733223(-)$1	307	31	34	9.0000
GCU	chr1:43850074-43850323(-)$1	249	5	8	9.0000
GCU	chr16:31501538-31501783(-)$1	245	2	5	9.0000
GCU	chr5:137688345-137688597(+)$1	252	7	10	9.0000
gcu	chr9:140323184-140323437(+)$1	253	2	5	9.0000
GCU	chr6:108533202-108533462(-)$1	260	8	11	9.0000
GCU	chr2:242839113-242839469(+)$1	356	51	54	9.0000
GCU	chr15:38776641-38776895(+)$1	254	127	130	9.0000
GCU	chr17:79396527-79396785(+)$1	258	56	59	9.0000
GCU	chr1:156713856-156714059(-)$1	203	29	32	9.0000
GCU	chr19:42752572-42752836(-)$1	264	15	18	9.0000
GCU	chr1:156713859-156714085(-)$1	226	55	58	9.0000
GCU	chr2:54197716-54197970(-)$1	254	45	48	9.0000
GCU	chr9:139249995-139250264(+)$1	269	109	112	9.0000
GCU	chr6:32157433-32157761(-)$1	328	66	69	9.0000
GCU	chr22:39917894-39918196(+)$1	302	199	202	9.0000
GCU	chr11:62482708-62482948(-)$1	240	59	62	9.0000
gcu	chr16:447772-448041(+)$1	269	57	60	9.0000
GCU	chr16:448890-449114(+)$1	224	22	25	9.0000
Gcu	chr19:14203524-14203788(-)$1	264	49	52	9.0000
GCU	chr10:103589514-103589751(-)$1	237	0	3	9.0000
GCU	chr19:49964856-49965141(+)$1	285	1	4	9.0000
GCU	chr2:54197770-54198041(-)$1	271	116	119	9.0000
GCU	chr11:64894400-64894674(+)$1	274	16	19	9.0000
GCU	chr1:28176883-28177200(+)$1	317	32	35	9.0000
GCU	chr19:45912810-45913092(+)$1	282	112	115	9.0000
GCU	chr7:128142495-128142797(+)$1	302	32	35	9.0000
GCU	chr12:132402869-132403160(+)$1	291	6	9	9.0000
GCU	chr15:35271699-35271985(-)$1	286	148	151	9.0000
GCU	chr13:99109374-99109659(-)$1	285	42	45	9.0000
GCU	chr6:24719973-24720215(-)$1	242	135	138	9.0000
GCU	chr19:5130925-5131211(+)$1	286	177	180	9.0000
GCU	chr6:34840097-34840334(+)$1	237	111	114	9.0000
GCU	chr8:23431091-23431352(+)$1	261	180	183	9.0000
GCU	chr11:126146110-126146397(+)$1	287	22	25	9.0000
GCU	chr19:18653591-18653870(-)$1	279	22	25	9.0000
GCU	chr12:132402960-132403244(+)$1	284	42	45	9.0000
GCU	chr19:18548493-18548731(-)$1	238	74	77	9.0000
GCU	chr1:205683472-205683717(-)$1	245	115	118	9.0000
GCU	chr11:118472290-118472576(+)$1	286	193	196	9.0000
GCU	chr11:62291333-62291624(-)$1	291	192	195	9.0000
GCU	chr22:39917996-39918227(+)$1	231	97	100	9.0000
GCU	chr1:15987730-15987997(+)$1	267	64	67	9.0000
GCU	chr7:24690015-24690277(+)$1	262	23	26	9.0000
GCU	chr5:126889387-126889643(+)$1	256	145	148	9.0000
GCU	chr22:39917442-39917683(+)$1	241	21	24	9.0000
GCU	chr17:56082184-56082428(-)$1	244	3	6	9.0000
GCU	chr19:2270300-2270560(+)$1	260	19	22	9.0000
GCU	chr19:6413377-6413656(-)$1	279	14	17	9.0000
gcu	chr10:75008950-75009190(-)$1	240	229	232	9.0000
gcu	chr19:49964743-49965003(+)$1	260	14	17	9.0000
GCU	chr11:126146252-126146497(+)$1	245	84	87	9.0000
GCU	chr11:126146297-126146595(+)$1	298	39	42	9.0000
GCU	chr14:105235803-105236125(-)$1	322	234	237	9.0000
GCU	chr2:37429824-37430072(+)$1	248	61	64	9.0000
GCU	chr1:205683414-205683671(-)$1	257	69	72	9.0000
gcu	chr12:133295179-133295465(+)$1	286	0	3	9.0000
GCU	chr1:150598054-150598286(-)$1	232	61	64	9.0000
GCU	chr1:183521997-183522262(+)$1	265	57	60	9.0000
GCU	chr14:69928301-69928547(+)$1	246	6	9	9.0000
GCU	chr1:154148602-154148824(-)$1	222	2	5	9.0000
GCU	chr16:30959012-30959312(+)$1	300	66	69	9.0000
GCU	chr11:126146857-126147104(+)$1	247	195	198	9.0000
GCU	chr16:69165154-69165468(-)$1	314	21	24	9.0000
GCU	chr4:52709720-52709983(+)$1	263	53	56	9.0000
GCU	chr19:49841154-49841502(-)$1	348	123	126	9.0000
GCU	chr17:73314702-73314972(-)$1	270	46	49	9.0000
GCU	chr19:14203459-14203724(-)$1	265	131	134	9.0000
GCU	chr16:448121-448349(+)$1	228	24	27	9.0000
gcu	chr12:122186052-122186352(+)$1	300	40	43	9.0000
GCU	chr22:37622736-37623043(-)$1	307	174	177	9.0000
GCU	chr22:39918027-39918261(+)$1	234	66	69	9.0000
GCU	chr17:56082266-56082506(-)$1	240	81	84	9.0000
GCU	chr15:41562695-41562914(+)$1	219	61	64	9.0000
GCU	chr17:79826291-79826563(-)$1	272	32	35	9.0000
GCU	chr19:2425969-2426221(-)$1	252	83	86	9.0000
GCU	chr16:69390010-69390294(-)$1	284	32	35	9.0000
GCU	chr8:145730527-145730791(-)$1	264	24	27	9.0000
GCU	chr5:137688423-137688669(+)$1	246	0	3	9.0000
GCU	chr19:47778067-47778305(+)$1	238	100	103	9.0000
GCU	chr7:128607277-128607534(-)$1	257	45	48	9.0000
GCU	chr11:126146221-126146452(+)$1	231	29	32	9.0000
GCU	chr1:109473988-109474249(-)$1	261	0	3	9.0000
GCU	chr11:62393450-62393679(-)$1	229	25	28	9.0000
gcu	chr15:38776583-38776805(+)$1	222	47	50	9.0000
GCU	chr19:2270531-2270772(+)$1	241	39	42	9.0000
GCU	chr5:652941-653227(+)$1	286	112	115	9.0000
GCU	chr6:24720015-24720250(-)$1	235	8	11	9.0000
GCU	chr19:49964946-49965219(+)$1	273	144	147	9.0000
GCU	chr12:132401813-132402067(+)$1	254	10	13	9.0000
gcu	chr21:47731339-47731732(-)$1	393	23	26	9.0000

#otherMatches

#Struct PSSM
eee	chr2:37429952-37430208(+)$1	256	108	111	9.0000
{FF	chr8:145729949-145730203(-)$1	254	11	14	9.0000
eee	chr21:46954417-46954715(-)$1	298	38	41	9.0000
cdd	chr19:2270419-2270680(+)$1	261	73	76	9.0000
CLL	chr10:49659492-49659801(-)$1	309	6	9	9.0000
cc$	chr11:62289984-62290239(-)$1	255	181	184	9.0000
[dd	chr1:205718996-205719247(-)$1	251	23	26	9.0000
>dd	chr19:3530587-3530907(+)$1	320	158	161	9.0000
fff	chr11:2405685-2406015(+)$1	330	5	8	9.0000
hhh	chr22:30732916-30733223(-)$1	307	31	34	9.0000
CKK	chr1:43850074-43850323(-)$1	249	5	8	9.0000
dd[	chr16:31501538-31501783(-)$1	245	2	5	9.0000
GGG	chr5:137688345-137688597(+)$1	252	7	10	9.0000
FFF	chr9:140323184-140323437(+)$1	253	2	5	9.0000
bcc	chr6:108533202-108533462(-)$1	260	8	11	9.0000
b!!	chr2:242839113-242839469(+)$1	356	51	54	9.0000
hhh	chr15:38776641-38776895(+)$1	254	127	130	9.0000
[ff	chr17:79396527-79396785(+)$1	258	56	59	9.0000
eee	chr1:156713856-156714059(-)$1	203	29	32	9.0000
cc!	chr19:42752572-42752836(-)$1	264	15	18	9.0000
eee	chr1:156713859-156714085(-)$1	226	55	58	9.0000
DDD	chr2:54197716-54197970(-)$1	254	45	48	9.0000
fff	chr9:139249995-139250264(+)$1	269	109	112	9.0000
f""	chr6:32157433-32157761(-)$1	328	66	69	9.0000
ddd	chr22:39917894-39918196(+)$1	302	199	202	9.0000
EEE	chr11:62482708-62482948(-)$1	240	59	62	9.0000
DDD	chr16:447772-448041(+)$1	269	57	60	9.0000
ffb	chr16:448890-449114(+)$1	224	22	25	9.0000
rcc	chr19:14203524-14203788(-)$1	264	49	52	9.0000
ddd	chr10:103589514-103589751(-)$1	237	0	3	9.0000
BKK	chr19:49964856-49965141(+)$1	285	1	4	9.0000
]cc	chr2:54197770-54198041(-)$1	271	116	119	9.0000
CNN	chr11:64894400-64894674(+)$1	274	16	19	9.0000
d!!	chr1:28176883-28177200(+)$1	317	32	35	9.0000
CCC	chr19:45912810-45913092(+)$1	282	112	115	9.0000
d[e	chr7:128142495-128142797(+)$1	302	32	35	9.0000
[hh	chr12:132402869-132403160(+)$1	291	6	9	9.0000
===	chr15:35271699-35271985(-)$1	286	148	151	9.0000
=:I	chr13:99109374-99109659(-)$1	285	42	45	9.0000
dd]	chr6:24719973-24720215(-)$1	242	135	138	9.0000
ccc	chr19:5130925-5131211(+)$1	286	177	180	9.0000
fff	chr6:34840097-34840334(+)$1	237	111	114	9.0000
rrr	chr8:23431091-23431352(+)$1	261	180	183	9.0000
sss	chr11:126146110-126146397(+)$1	287	22	25	9.0000
eee	chr19:18653591-18653870(-)$1	279	22	25	9.0000
lll	chr12:132402960-132403244(+)$1	284	42	45	9.0000
bb#	chr19:18548493-18548731(-)$1	238	74	77	9.0000
ppp	chr1:205683472-205683717(-)$1	245	115	118	9.0000
ccc	chr11:118472290-118472576(+)$1	286	193	196	9.0000
===	chr11:62291333-62291624(-)$1	291	192	195	9.0000
ddd	chr22:39917996-39918227(+)$1	231	97	100	9.0000
^^^	chr1:15987730-15987997(+)$1	267	64	67	9.0000
D{D	chr7:24690015-24690277(+)$1	262	23	26	9.0000
fff	chr5:126889387-126889643(+)$1	256	145	148	9.0000
ggg	chr22:39917442-39917683(+)$1	241	21	24	9.0000
EEE	chr17:56082184-56082428(-)$1	244	3	6	9.0000
HH:	chr19:2270300-2270560(+)$1	260	19	22	9.0000
GGG	chr19:6413377-6413656(-)$1	279	14	17	9.0000
DDC	chr10:75008950-75009190(-)$1	240	229	232	9.0000
FFF	chr19:49964743-49965003(+)$1	260	14	17	9.0000
ggg	chr11:126146252-126146497(+)$1	245	84	87	9.0000
ggg	chr11:126146297-126146595(+)$1	298	39	42	9.0000
DDD	chr14:105235803-105236125(-)$1	322	234	237	9.0000
III	chr2:37429824-37430072(+)$1	248	61	64	9.0000
ppp	chr1:205683414-205683671(-)$1	257	69	72	9.0000
BBJ	chr12:133295179-133295465(+)$1	286	0	3	9.0000
:dd	chr1:150598054-150598286(-)$1	232	61	64	9.0000
eee	chr1:183521997-183522262(+)$1	265	57	60	9.0000
EEE	chr14:69928301-69928547(+)$1	246	6	9	9.0000
GGG	chr1:154148602-154148824(-)$1	222	2	5	9.0000
a!!	chr16:30959012-30959312(+)$1	300	66	69	9.0000
H::	chr11:126146857-126147104(+)$1	247	195	198	9.0000
JJd	chr16:69165154-69165468(-)$1	314	21	24	9.0000
eee	chr4:52709720-52709983(+)$1	263	53	56	9.0000
ccc	chr19:49841154-49841502(-)$1	348	123	126	9.0000
ooo	chr17:73314702-73314972(-)$1	270	46	49	9.0000
eee	chr19:14203459-14203724(-)$1	265	131	134	9.0000
JJK	chr16:448121-448349(+)$1	228	24	27	9.0000
dde	chr12:122186052-122186352(+)$1	300	40	43	9.0000
===	chr22:37622736-37623043(-)$1	307	174	177	9.0000
ddd	chr22:39918027-39918261(+)$1	234	66	69	9.0000
!dd	chr17:56082266-56082506(-)$1	240	81	84	9.0000
:gg	chr15:41562695-41562914(+)$1	219	61	64	9.0000
HHH	chr17:79826291-79826563(-)$1	272	32	35	9.0000
a!!	chr19:2425969-2426221(-)$1	252	83	86	9.0000
nnn	chr16:69390010-69390294(-)$1	284	32	35	9.0000
b%%	chr8:145730527-145730791(-)$1	264	24	27	9.0000
eee	chr5:137688423-137688669(+)$1	246	0	3	9.0000
ddd	chr19:47778067-47778305(+)$1	238	100	103	9.0000
ddl	chr7:128607277-128607534(-)$1	257	45	48	9.0000
eec	chr11:126146221-126146452(+)$1	231	29	32	9.0000
:::	chr1:109473988-109474249(-)$1	261	0	3	9.0000
vvv	chr11:62393450-62393679(-)$1	229	25	28	9.0000
ccc	chr15:38776583-38776805(+)$1	222	47	50	9.0000
shh	chr19:2270531-2270772(+)$1	241	39	42	9.0000
eee	chr5:652941-653227(+)$1	286	112	115	9.0000
c((	chr6:24720015-24720250(-)$1	235	8	11	9.0000
ggg	chr19:49964946-49965219(+)$1	273	144	147	9.0000
FFF	chr12:132401813-132402067(+)$1	254	10	13	9.0000
ccc	chr21:47731339-47731732(-)$1	393	23	26	9.0000

#DB
(((	chr2:37429952-37430208(+)$1	1	108	111	9.0000
.((	chr8:145729949-145730203(-)$1	1	11	14	9.0000
(((	chr21:46954417-46954715(-)$1	1	38	41	9.0000
(((	chr19:2270419-2270680(+)$1	1	73	76	9.0000
(..	chr10:49659492-49659801(-)$1	1	6	9	9.0000
((.	chr11:62289984-62290239(-)$1	1	181	184	9.0000
.((	chr1:205718996-205719247(-)$1	1	23	26	9.0000
.))	chr19:3530587-3530907(+)$1	1	158	161	9.0000
(((	chr11:2405685-2406015(+)$1	1	5	8	9.0000
(((	chr22:30732916-30733223(-)$1	1	31	34	9.0000
(..	chr1:43850074-43850323(-)$1	1	5	8	9.0000
((.	chr16:31501538-31501783(-)$1	1	2	5	9.0000
(((	chr5:137688345-137688597(+)$1	1	7	10	9.0000
(((	chr9:140323184-140323437(+)$1	1	2	5	9.0000
(((	chr6:108533202-108533462(-)$1	1	8	11	9.0000
(..	chr2:242839113-242839469(+)$1	1	51	54	9.0000
)))	chr15:38776641-38776895(+)$1	1	127	130	9.0000
.((	chr17:79396527-79396785(+)$1	1	56	59	9.0000
(((	chr1:156713856-156714059(-)$1	1	29	32	9.0000
((.	chr19:42752572-42752836(-)$1	1	15	18	9.0000
(((	chr1:156713859-156714085(-)$1	1	55	58	9.0000
(((	chr2:54197716-54197970(-)$1	1	45	48	9.0000
)))	chr9:139249995-139250264(+)$1	1	109	112	9.0000
(..	chr6:32157433-32157761(-)$1	1	66	69	9.0000
)))	chr22:39917894-39918196(+)$1	1	199	202	9.0000
(((	chr11:62482708-62482948(-)$1	1	59	62	9.0000
(((	chr16:447772-448041(+)$1	1	57	60	9.0000
)))	chr16:448890-449114(+)$1	1	22	25	9.0000
.))	chr19:14203524-14203788(-)$1	1	49	52	9.0000
(((	chr10:103589514-103589751(-)$1	1	0	3	9.0000
(..	chr19:49964856-49965141(+)$1	1	1	4	9.0000
.))	chr2:54197770-54198041(-)$1	1	116	119	9.0000
(..	chr11:64894400-64894674(+)$1	1	16	19	9.0000
(..	chr1:28176883-28177200(+)$1	1	32	35	9.0000
(((	chr19:45912810-45913092(+)$1	1	112	115	9.0000
(.(	chr7:128142495-128142797(+)$1	1	32	35	9.0000
.((	chr12:132402869-132403160(+)$1	1	6	9	9.0000
)))	chr15:35271699-35271985(-)$1	1	148	151	9.0000
).(	chr13:99109374-99109659(-)$1	1	42	45	9.0000
)).	chr6:24719973-24720215(-)$1	1	135	138	9.0000
(((	chr19:5130925-5131211(+)$1	1	177	180	9.0000
(((	chr6:34840097-34840334(+)$1	1	111	114	9.0000
...	chr8:23431091-23431352(+)$1	1	180	183	9.0000
...	chr11:126146110-126146397(+)$1	1	22	25	9.0000
(((	chr19:18653591-18653870(-)$1	1	22	25	9.0000
...	chr12:132402960-132403244(+)$1	1	42	45	9.0000
((.	chr19:18548493-18548731(-)$1	1	74	77	9.0000
...	chr1:205683472-205683717(-)$1	1	115	118	9.0000
(((	chr11:118472290-118472576(+)$1	1	193	196	9.0000
(((	chr11:62291333-62291624(-)$1	1	192	195	9.0000
)))	chr22:39917996-39918227(+)$1	1	97	100	9.0000
...	chr1:15987730-15987997(+)$1	1	64	67	9.0000
(.(	chr7:24690015-24690277(+)$1	1	23	26	9.0000
(((	chr5:126889387-126889643(+)$1	1	145	148	9.0000
(((	chr22:39917442-39917683(+)$1	1	21	24	9.0000
(((	chr17:56082184-56082428(-)$1	1	3	6	9.0000
((.	chr19:2270300-2270560(+)$1	1	19	22	9.0000
(((	chr19:6413377-6413656(-)$1	1	14	17	9.0000
)))	chr10:75008950-75009190(-)$1	1	229	232	9.0000
(((	chr19:49964743-49965003(+)$1	1	14	17	9.0000
(((	chr11:126146252-126146497(+)$1	1	84	87	9.0000
(((	chr11:126146297-126146595(+)$1	1	39	42	9.0000
)))	chr14:105235803-105236125(-)$1	1	234	237	9.0000
(((	chr2:37429824-37430072(+)$1	1	61	64	9.0000
...	chr1:205683414-205683671(-)$1	1	69	72	9.0000
(((	chr12:133295179-133295465(+)$1	1	0	3	9.0000
.((	chr1:150598054-150598286(-)$1	1	61	64	9.0000
(((	chr1:183521997-183522262(+)$1	1	57	60	9.0000
(((	chr14:69928301-69928547(+)$1	1	6	9	9.0000
(((	chr1:154148602-154148824(-)$1	1	2	5	9.0000
(..	chr16:30959012-30959312(+)$1	1	66	69	9.0000
)..	chr11:126146857-126147104(+)$1	1	195	198	9.0000
(((	chr16:69165154-69165468(-)$1	1	21	24	9.0000
)))	chr4:52709720-52709983(+)$1	1	53	56	9.0000
(((	chr19:49841154-49841502(-)$1	1	123	126	9.0000
...	chr17:73314702-73314972(-)$1	1	46	49	9.0000
)))	chr19:14203459-14203724(-)$1	1	131	134	9.0000
((.	chr16:448121-448349(+)$1	1	24	27	9.0000
(((	chr12:122186052-122186352(+)$1	1	40	43	9.0000
)))	chr22:37622736-37623043(-)$1	1	174	177	9.0000
)))	chr22:39918027-39918261(+)$1	1	66	69	9.0000
.((	chr17:56082266-56082506(-)$1	1	81	84	9.0000
.((	chr15:41562695-41562914(+)$1	1	61	64	9.0000
(((	chr17:79826291-79826563(-)$1	1	32	35	9.0000
(..	chr19:2425969-2426221(-)$1	1	83	86	9.0000
...	chr16:69390010-69390294(-)$1	1	32	35	9.0000
(..	chr8:145730527-145730791(-)$1	1	24	27	9.0000
(((	chr5:137688423-137688669(+)$1	1	0	3	9.0000
)))	chr19:47778067-47778305(+)$1	1	100	103	9.0000
((.	chr7:128607277-128607534(-)$1	1	45	48	9.0000
(((	chr11:126146221-126146452(+)$1	1	29	32	9.0000
...	chr1:109473988-109474249(-)$1	1	0	3	9.0000
...	chr11:62393450-62393679(-)$1	1	25	28	9.0000
)))	chr15:38776583-38776805(+)$1	1	47	50	9.0000
.))	chr19:2270531-2270772(+)$1	1	39	42	9.0000
)))	chr5:652941-653227(+)$1	1	112	115	9.0000
(..	chr6:24720015-24720250(-)$1	1	8	11	9.0000
)))	chr19:49964946-49965219(+)$1	1	144	147	9.0000
(((	chr12:132401813-132402067(+)$1	1	10	13	9.0000
)))	chr21:47731339-47731732(-)$1	1	23	26	9.0000

#PSSM
G : 0.91	g : 0.09	
C : 0.90	c : 0.09	
U : 0.90	u : 0.09	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_transcript_m1_run1.nuc.txt

#NT
CCUGGAGU	chr17:27047463-27047725(+)$1	262	63	71	12.0645
CCUGCUGG	chr19:12814338-12814589(-)$1	251	178	186	13.1935
CUUGGUGG	chr1:31440943-31441165(-)$1	222	212	220	11.4193
CCUGAUGC	chr11:93454578-93454874(+)$1	296	180	188	13.1935
CCUGGUGC	chr8:144940390-144940802(-)$1	412	67	75	16.0967
CCUGUUGA	chr5:137896676-137896892(-)$1	216	163	171	13.5161
CCUGCUGA	chr6:31802947-31803177(+)$1	230	10	18	13.3548
CCUGGCGG	chr22:23522678-23522941(+)$1	263	179	187	12.5483
CCUGUUGA	chr5:137896692-137896899(-)$1	207	170	178	13.5161
CCUGGUGG	chr19:4037223-4037473(+)$1	250	199	207	16.0967
CCUGGAGC	chr16:85689999-85690336(+)$1	337	168	176	13.0322
CCCGGUGU	chr19:24187184-24187410(-)$1	226	64	72	11.2580
CCUGGAGC	chr5:647970-648252(+)$1	282	4	12	13.0322
GCUGGUGC	chr8:1780087-1780376(+)$1	289	206	214	11.4193
CCCGGUGU	chr19:24187174-24187384(-)$1	210	38	46	11.2580
CCGGGUGG	chr19:10220349-10220572(+)$1	223	69	77	12.3870
CCUGGAGG	chr16:88960092-88960377(-)$1	285	70	78	13.0322
CCUGGUGC	chr7:45144136-45144441(-)$1	305	243	251	16.0967
CCUGGGGA	chr7:45144241-45144538(-)$1	297	5	13	13.0322
CCUGUUGA	chr5:137896666-137896876(-)$1	210	147	155	13.5161
CCUGGUCA	chr1:1284370-1284623(-)$1	253	228	236	11.7419
CCUGCUGA	chr6:31802937-31803147(+)$1	210	20	28	13.3548
CCGGGUGG	chr19:10220339-10220549(+)$1	210	79	87	12.3870
CCUGGGGC	chr12:123994742-123995032(-)$1	290	217	225	12.8709
CCUGGUGG	chr1:984893-985170(+)$1	277	41	49	16.0967
CCUGAUGC	chrX:20154220-20154509(-)$1	289	57	65	13.1935
CCUGUUGA	chr5:137896664-137896866(-)$1	202	137	145	13.5161
CCUggggg	chr9:139734826-139735104(+)$1	278	87	95	12.8709
CCUGAUGA	chr17:16342770-16343036(+)$1	266	51	59	13.3548
CCGGGUGA	chr16:89023319-89023608(-)$1	289	174	182	12.5483

#otherMatches

#Struct PSSM
ddd22iii	chr5:651415-651716(+)$1	301	181	189	11.5806
3eeeee::	chr17:27047463-27047725(+)$1	262	63	71	12.0645
g666666c	chr19:12814338-12814589(-)$1	251	178	186	13.1935
F:::::::	chr1:31440943-31441165(-)$1	222	212	220	11.4193
2ggggggg	chr11:93454578-93454874(+)$1	296	180	188	13.1935
5iiiiiii	chr8:144940390-144940802(-)$1	412	67	75	16.0967
ooddddee	chr5:137896676-137896892(-)$1	216	163	171	13.5161
gg[ccc[b	chr6:31802947-31803177(+)$1	230	10	18	13.3548
hhhhbbbb	chr22:23522678-23522941(+)$1	263	179	187	12.5483
ooddddee	chr5:137896692-137896899(-)$1	207	170	178	13.5161
eebbbbnn	chr19:4037223-4037473(+)$1	250	199	207	16.0967
d22a]ccc	chr16:85689999-85690336(+)$1	337	168	176	13.0322
ffffmmmm	chr19:24187184-24187410(-)$1	226	64	72	11.2580
ffffffww	chr5:647970-648252(+)$1	282	4	12	13.0322
dd[a[eee	chr8:1780087-1780376(+)$1	289	206	214	11.4193
ffffmmmm	chr19:24187174-24187384(-)$1	210	38	46	11.2580
{DDDD{CC	chr19:10220349-10220572(+)$1	223	69	77	12.3870
gggg[ccc	chr16:88960092-88960377(-)$1	285	70	78	13.0322
}GGGGGGG	chr7:45144136-45144441(-)$1	305	243	251	16.0967
=======#	chr7:45144241-45144538(-)$1	297	5	13	13.0322
ooddddee	chr5:137896666-137896876(-)$1	210	147	155	13.5161
GGGGGGGY	chr1:1284370-1284623(-)$1	253	228	236	11.7419
ffffff[b	chr6:31802937-31803147(+)$1	210	20	28	13.3548
EKKGGGGG	chr19:10220339-10220549(+)$1	210	79	87	12.3870
3eeeee33	chr12:123994742-123995032(-)$1	290	217	225	12.8709
bbmmmmbb	chr1:984893-985170(+)$1	277	41	49	16.0967
44dddd]c	chrX:20154220-20154509(-)$1	289	57	65	13.1935
ooddddee	chr5:137896664-137896866(-)$1	202	137	145	13.5161
gggggggp	chr9:139734826-139735104(+)$1	278	87	95	12.8709
cffffff[	chr17:16342770-16343036(+)$1	266	51	59	13.3548
[ccc[hhh	chr16:89023319-89023608(-)$1	289	174	182	12.5483

#DB
)))..)))	chr5:651415-651716(+)$1	1	181	189	11.5806
.)))))..	chr17:27047463-27047725(+)$1	1	63	71	12.0645
)......)	chr19:12814338-12814589(-)$1	1	178	186	13.1935
).......	chr1:31440943-31441165(-)$1	1	212	220	11.4193
.)))))))	chr11:93454578-93454874(+)$1	1	180	188	13.1935
.)))))))	chr8:144940390-144940802(-)$1	1	67	75	16.0967
..))))((	chr5:137896676-137896892(-)$1	1	163	171	13.5161
((.(((.(	chr6:31802947-31803177(+)$1	1	10	18	13.3548
))))))((	chr22:23522678-23522941(+)$1	1	179	187	12.5483
..))))((	chr5:137896692-137896899(-)$1	1	170	178	13.5161
((((((..	chr19:4037223-4037473(+)$1	1	199	207	16.0967
)..).)))	chr16:85689999-85690336(+)$1	1	168	176	13.0322
((((....	chr19:24187184-24187410(-)$1	1	64	72	11.2580
((((((..	chr5:647970-648252(+)$1	1	4	12	13.0322
((.(.(((	chr8:1780087-1780376(+)$1	1	206	214	11.4193
((((....	chr19:24187174-24187384(-)$1	1	38	46	11.2580
.((((.((	chr19:10220349-10220572(+)$1	1	69	77	12.3870
((((.(((	chr16:88960092-88960377(-)$1	1	70	78	13.0322
.)))))))	chr7:45144136-45144441(-)$1	1	243	251	16.0967
(((((((.	chr7:45144241-45144538(-)$1	1	5	13	13.0322
..))))((	chr5:137896666-137896876(-)$1	1	147	155	13.5161
))))))).	chr1:1284370-1284623(-)$1	1	228	236	11.7419
((((((.(	chr6:31802937-31803147(+)$1	1	20	28	13.3548
(..(((((	chr19:10220339-10220549(+)$1	1	79	87	12.3870
.)))))..	chr12:123994742-123995032(-)$1	1	217	225	12.8709
((....))	chr1:984893-985170(+)$1	1	41	49	16.0967
..)))).)	chrX:20154220-20154509(-)$1	1	57	65	13.1935
..))))((	chr5:137896664-137896866(-)$1	1	137	145	13.5161
(((((((.	chr9:139734826-139735104(+)$1	1	87	95	12.8709
)((((((.	chr17:16342770-16343036(+)$1	1	51	59	13.3548
.(((.(((	chr16:89023319-89023608(-)$1	1	174	182	12.5483

#PSSM
C : 0.96	G : 0.03	
C : 0.96	U : 0.03	
U : 0.83	G : 0.09	C : 0.06	
G : 0.96	g : 0.03	
G : 0.64	U : 0.12	C : 0.09	A : 0.09	g : 0.03	
U : 0.74	A : 0.12	G : 0.06	C : 0.03	g : 0.03	
G : 0.90	U : 0.03	C : 0.03	g : 0.03	
A : 0.32	C : 0.29	G : 0.25	U : 0.09	g : 0.03	

#score	406.5806451612902
#seq	31
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_CDS_m3_run1.nuc.txt

#NT
AGGAG	chr12:54066258-54066500(-)$1	242	37	42	15.0000
AGGAG	chr22:38282740-38282953(+)$1	213	107	112	15.0000
AGGAG	chr2:74753983-74754231(-)$1	248	115	120	15.0000
AGGAG	chr10:79800271-79800481(+)$1	210	105	110	15.0000
AGGAG	chr4:39459936-39460161(-)$1	225	22	27	15.0000
aggag	chr19:18652514-18652796(-)$1	282	122	127	15.0000
AGGAG	chr16:89627648-89627876(+)$1	228	117	122	15.0000
AGGAG	chr12:53691742-53691957(+)$1	215	168	173	15.0000
AGGAG	chr20:57607201-57607465(-)$1	264	18	23	15.0000
AGGAG	chr16:88876730-88876994(-)$1	264	72	77	15.0000
AGGAG	chr11:64084820-64085087(-)$1	267	13	18	15.0000
AGGAG	chr15:44085807-44086021(+)$1	214	147	152	15.0000
AGGAG	chr12:53691768-53692022(+)$1	254	142	147	15.0000
AGGAG	chr17:36908935-36909182(+)$1	247	205	210	15.0000
AGGAG	chr4:109546183-109546414(+)$1	231	123	128	15.0000
AGGAG	chr16:449545-449814(+)$1	269	233	238	15.0000
AGGAG	chr9:130922611-130922864(+)$1	253	130	135	15.0000
AGGAG	chr15:69745949-69746157(+)$1	208	34	39	15.0000
AGGAG	chr16:30081409-30081624(+)$1	215	184	189	15.0000
AGGAG	chr13:27827876-27828080(+)$1	204	58	63	15.0000
AGGAG	chr12:57106189-57106438(-)$1	249	149	154	15.0000
AGGAG	chr8:144661881-144662100(-)$1	219	32	37	15.0000
AGGAG	chr1:156707051-156707305(-)$1	254	48	53	15.0000
AGGAG	chr11:5289664-5289881(-)$1	217	100	105	15.0000
AGGAG	chr6:33243852-33244054(+)$1	202	53	58	15.0000
AGGAG	chr19:39127428-39127671(+)$1	243	222	227	15.0000
AGGAG	chr6:75947510-75947743(-)$1	233	90	95	15.0000
AGGAG	chr6:35436085-35436316(+)$1	231	32	37	15.0000
AGGAG	chr10:106027029-106027289(+)$1	260	141	146	15.0000
AGGAG	chr16:31202185-31202419(+)$1	234	132	137	15.0000
aggag	chr19:18652473-18652714(-)$1	241	40	45	15.0000
AGGAG	chr2:97541870-97542133(-)$1	263	211	216	15.0000
AGGAG	chr7:141450041-141450285(+)$1	244	1	6	15.0000
AGGAG	chr16:31539759-31539987(+)$1	228	146	151	15.0000
AGGAG	chr9:35056979-35057229(-)$1	250	186	191	15.0000
AGGAG	chr19:55649227-55649455(-)$1	228	11	16	15.0000
AGGAG	chr17:41150665-41150875(+)$1	210	32	37	15.0000
AGGAG	chr1:156109462-156109698(+)$1	236	229	234	15.0000
AGGAG	chr11:75113328-75113549(+)$1	221	141	146	15.0000
AGGAG	chr2:217365961-217366190(+)$1	229	146	151	15.0000
AGGAG	chr11:66204551-66204793(-)$1	242	215	220	15.0000
AGGAG	chr17:37006278-37006517(-)$1	239	77	82	15.0000
AGGAG	chrX:48652533-48652772(+)$1	239	60	65	15.0000
AGGAG	chr19:14582332-14582578(+)$1	246	151	156	15.0000
AGGAG	chr12:6647213-6647418(+)$1	205	115	120	15.0000
AGGAG	chr6:30698658-30698935(-)$1	277	83	88	15.0000
AGGAG	chr1:46775775-46776015(+)$1	240	175	180	15.0000
AGGAG	chr22:19776157-19776399(-)$1	242	194	199	15.0000
AGGAG	chr9:139757642-139757883(-)$1	241	49	54	15.0000
AGGAG	chr6:31604934-31605160(+)$1	226	171	176	15.0000
AGGAG	chr1:110134629-110134877(+)$1	248	110	115	15.0000
AGGAG	chr17:61909049-61909270(+)$1	221	92	97	15.0000
AGGAG	chr19:39924098-39924310(-)$1	212	32	37	15.0000
AGGAG	chr6:133138519-133138720(+)$1	201	109	114	15.0000
AGGAG	chr11:67205752-67206001(-)$1	249	27	32	15.0000

#otherMatches

#Struct PSSM
""fff	chr17:79671596-79671847(+)$1	251	145	150	15.0000
eeeee	chr12:54066258-54066500(-)$1	242	37	42	15.0000
f]a]d	chr22:38282740-38282953(+)$1	213	107	112	15.0000
eeemm	chr2:74753983-74754231(-)$1	248	115	120	15.0000
gggee	chr10:79800271-79800481(+)$1	210	105	110	15.0000
ppppp	chr4:39459936-39460161(-)$1	225	22	27	15.0000
YEEEE	chr19:18652514-18652796(-)$1	282	122	127	15.0000
ooooo	chr16:89627648-89627876(+)$1	228	117	122	15.0000
=====	chr12:53691742-53691957(+)$1	215	168	173	15.0000
iiiii	chr20:57607201-57607465(-)$1	264	18	23	15.0000
ggrrr	chr16:88876730-88876994(-)$1	264	72	77	15.0000
FFFFF	chr11:64084820-64085087(-)$1	267	13	18	15.0000
CCC}C	chr15:44085807-44086021(+)$1	214	147	152	15.0000
=====	chr12:53691768-53692022(+)$1	254	142	147	15.0000
ooooo	chr17:36908935-36909182(+)$1	247	205	210	15.0000
c[bbq	chr4:109546183-109546414(+)$1	231	123	128	15.0000
CCYYB	chr16:449545-449814(+)$1	269	233	238	15.0000
2eeee	chr9:130922611-130922864(+)$1	253	130	135	15.0000
ggggg	chr15:69745949-69746157(+)$1	208	34	39	15.0000
ddd]c	chr16:30081409-30081624(+)$1	215	184	189	15.0000
dddd]	chr13:27827876-27828080(+)$1	204	58	63	15.0000
hhhhf	chr12:57106189-57106438(-)$1	249	149	154	15.0000
:dddd	chr8:144661881-144662100(-)$1	219	32	37	15.0000
IIIII	chr1:156707051-156707305(-)$1	254	48	53	15.0000
"bboo	chr11:5289664-5289881(-)$1	217	100	105	15.0000
::::b	chr6:33243852-33244054(+)$1	202	53	58	15.0000
Cgggg	chr19:39127428-39127671(+)$1	243	222	227	15.0000
[bb[e	chr6:75947510-75947743(-)$1	233	90	95	15.0000
]eeee	chr6:35436085-35436316(+)$1	231	32	37	15.0000
dddde	chr10:106027029-106027289(+)$1	260	141	146	15.0000
"bb[d	chr16:31202185-31202419(+)$1	234	132	137	15.0000
{BB::	chr19:18652473-18652714(-)$1	241	40	45	15.0000
ooood	chr2:97541870-97542133(-)$1	263	211	216	15.0000
GGGGG	chr7:141450041-141450285(+)$1	244	1	6	15.0000
:FFFF	chr16:31539759-31539987(+)$1	228	146	151	15.0000
:ffff	chr9:35056979-35057229(-)$1	250	186	191	15.0000
oooob	chr19:55649227-55649455(-)$1	228	11	16	15.0000
mmmmf	chr17:41150665-41150875(+)$1	210	32	37	15.0000
}BB}C	chr1:156109462-156109698(+)$1	236	229	234	15.0000
ooooc	chr11:75113328-75113549(+)$1	221	141	146	15.0000
6dddd	chr2:217365961-217366190(+)$1	229	146	151	15.0000
]eeee	chr11:66204551-66204793(-)$1	242	215	220	15.0000
hhhhh	chr17:37006278-37006517(-)$1	239	77	82	15.0000
=====	chrX:48652533-48652772(+)$1	239	60	65	15.0000
neeee	chr19:14582332-14582578(+)$1	246	151	156	15.0000
[bbqq	chr12:6647213-6647418(+)$1	205	115	120	15.0000
dddd5	chr6:30698658-30698935(-)$1	277	83	88	15.0000
2hhhh	chr1:46775775-46776015(+)$1	240	175	180	15.0000
:GGGG	chr22:19776157-19776399(-)$1	242	194	199	15.0000
CC{CC	chr9:139757642-139757883(-)$1	241	49	54	15.0000
hhh]b	chr6:31604934-31605160(+)$1	226	171	176	15.0000
^^^ff	chr1:110134629-110134877(+)$1	248	110	115	15.0000
GGGGG	chr17:61909049-61909270(+)$1	221	92	97	15.0000
eeecc	chr19:39924098-39924310(-)$1	212	32	37	15.0000
ZEEEE	chr6:133138519-133138720(+)$1	201	109	114	15.0000
%%%%%	chr11:67205752-67206001(-)$1	249	27	32	15.0000

#DB
..(((	chr17:79671596-79671847(+)$1	1	145	150	15.0000
(((((	chr12:54066258-54066500(-)$1	1	37	42	15.0000
).).)	chr22:38282740-38282953(+)$1	1	107	112	15.0000
(((..	chr2:74753983-74754231(-)$1	1	115	120	15.0000
)))))	chr10:79800271-79800481(+)$1	1	105	110	15.0000
.....	chr4:39459936-39460161(-)$1	1	22	27	15.0000
.))))	chr19:18652514-18652796(-)$1	1	122	127	15.0000
.....	chr16:89627648-89627876(+)$1	1	117	122	15.0000
(((((	chr12:53691742-53691957(+)$1	1	168	173	15.0000
(((((	chr20:57607201-57607465(-)$1	1	18	23	15.0000
((...	chr16:88876730-88876994(-)$1	1	72	77	15.0000
(((((	chr11:64084820-64085087(-)$1	1	13	18	15.0000
))).)	chr15:44085807-44086021(+)$1	1	147	152	15.0000
(((((	chr12:53691768-53692022(+)$1	1	142	147	15.0000
.....	chr17:36908935-36909182(+)$1	1	205	210	15.0000
(.((.	chr4:109546183-109546414(+)$1	1	123	128	15.0000
))..)	chr16:449545-449814(+)$1	1	233	238	15.0000
.))))	chr9:130922611-130922864(+)$1	1	130	135	15.0000
)))))	chr15:69745949-69746157(+)$1	1	34	39	15.0000
))).)	chr16:30081409-30081624(+)$1	1	184	189	15.0000
)))).	chr13:27827876-27828080(+)$1	1	58	63	15.0000
))))(	chr12:57106189-57106438(-)$1	1	149	154	15.0000
.((((	chr8:144661881-144662100(-)$1	1	32	37	15.0000
(((((	chr1:156707051-156707305(-)$1	1	48	53	15.0000
.((..	chr11:5289664-5289881(-)$1	1	100	105	15.0000
....(	chr6:33243852-33244054(+)$1	1	53	58	15.0000
)((((	chr19:39127428-39127671(+)$1	1	222	227	15.0000
.((.(	chr6:75947510-75947743(-)$1	1	90	95	15.0000
.))))	chr6:35436085-35436316(+)$1	1	32	37	15.0000
(((((	chr10:106027029-106027289(+)$1	1	141	146	15.0000
.((.(	chr16:31202185-31202419(+)$1	1	132	137	15.0000
.((..	chr19:18652473-18652714(-)$1	1	40	45	15.0000
....)	chr2:97541870-97542133(-)$1	1	211	216	15.0000
(((((	chr7:141450041-141450285(+)$1	1	1	6	15.0000
.((((	chr16:31539759-31539987(+)$1	1	146	151	15.0000
.((((	chr9:35056979-35057229(-)$1	1	186	191	15.0000
....)	chr19:55649227-55649455(-)$1	1	11	16	15.0000
....)	chr17:41150665-41150875(+)$1	1	32	37	15.0000
.)).)	chr1:156109462-156109698(+)$1	1	229	234	15.0000
....)	chr11:75113328-75113549(+)$1	1	141	146	15.0000
.))))	chr2:217365961-217366190(+)$1	1	146	151	15.0000
.))))	chr11:66204551-66204793(-)$1	1	215	220	15.0000
)))))	chr17:37006278-37006517(-)$1	1	77	82	15.0000
(((((	chrX:48652533-48652772(+)$1	1	60	65	15.0000
.))))	chr19:14582332-14582578(+)$1	1	151	156	15.0000
.((..	chr12:6647213-6647418(+)$1	1	115	120	15.0000
)))).	chr6:30698658-30698935(-)$1	1	83	88	15.0000
.))))	chr1:46775775-46776015(+)$1	1	175	180	15.0000
.))))	chr22:19776157-19776399(-)$1	1	194	199	15.0000
((.((	chr9:139757642-139757883(-)$1	1	49	54	15.0000
))).)	chr6:31604934-31605160(+)$1	1	171	176	15.0000
...))	chr1:110134629-110134877(+)$1	1	110	115	15.0000
)))))	chr17:61909049-61909270(+)$1	1	92	97	15.0000
(((((	chr19:39924098-39924310(-)$1	1	32	37	15.0000
.))))	chr6:133138519-133138720(+)$1	1	109	114	15.0000
.....	chr11:67205752-67206001(-)$1	1	27	32	15.0000

#PSSM
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	

#score	840.0000000000005
#seq	56
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_transcript_m1_run2.nuc.txt

#NT
AUUUAUUU	chr1:70716188-70716474(+)$1	286	14	22	16.0138
AUUUUUUU	chr18:33744312-33744563(+)$1	251	1	9	20.1805
Auuuuuuu	chr1:173834225-173834436(-)$1	211	87	95	20.1805
AUUUUUUU	chr6:136592974-136593218(-)$1	244	103	111	20.1805
AUAUUUUU	chr1:19491998-19492224(-)$1	226	103	111	15.9444
AUUCUUUU	chr2:70143098-70143393(+)$1	295	53	61	16.4305
AGUUUUUU	chr7:104715151-104715456(+)$1	305	226	234	15.9444
AUUGUUUU	chr10:17738660-17738905(+)$1	245	92	100	16.6388
AUUUUUUA	chr1:52212267-52212569(+)$1	302	95	103	15.8055
AAUUUUUU	chr3:185637088-185637421(-)$1	333	81	89	15.7361
AUUUUUUA	chr4:83347056-83347306(-)$1	250	230	238	15.8055
AUUUUGUU	chr11:68358024-68358277(+)$1	253	86	94	16.1527
ACUUUUUU	chr1:161183815-161184073(+)$1	258	57	65	15.8055
AUUUUGUU	chr12:72004742-72004985(-)$1	243	38	46	16.1527
AUGUUUUU	chr2:135815465-135815787(+)$1	322	282	290	15.9444
AUUUUUUU	chr11:120307908-120308220(+)$1	312	27	35	20.1805
AUUGUUUU	chrX:53654704-53654952(-)$1	248	92	100	16.6388
AUUGUUUU	chr1:28834533-28834804(+)$1	271	155	163	16.6388
AUUUUUUA	chr2:153547361-153547596(-)$1	235	95	103	15.8055
AUUUUUUU	chr20:34319690-34319938(-)$1	248	168	176	20.1805
AUCUUUUU	chr5:158585925-158586152(-)$1	227	87	95	16.1527
AUUUUUUC	chr1:46083631-46083916(+)$1	285	231	239	15.5972
AUUUAUUU	chr1:182850509-182850787(+)$1	278	134	142	16.0138
AUUCUUUU	chr12:56680125-56680396(-)$1	271	238	246	16.4305
AUUGUUUU	chr5:33448531-33448772(+)$1	241	28	36	16.6388
AUUCUUUU	chr7:138943907-138944208(+)$1	301	85	93	16.4305
AUUUCUUU	chr5:118437479-118437781(+)$1	302	79	87	15.9444
AUUUUUUU	chr11:85737282-85737490(-)$1	208	66	74	20.1805
AUUUUGUU	chr18:2700408-2700676(+)$1	268	99	107	16.1527
AUUUAUUU	chr2:152273082-152273335(+)$1	253	216	224	16.0138
AUGUUUUU	chr2:135815596-135815844(+)$1	248	151	159	15.9444
AUUUUUUU	chr9:114182302-114182576(-)$1	274	119	127	20.1805
AUUUUUUU	chr1:186336835-186337052(-)$1	217	128	136	20.1805
auuuuauu	chr2:38810940-38811193(-)$1	253	0	8	15.8749
AUUUGUUU	chr4:128812140-128812399(+)$1	259	3	11	16.0833
AUUUUUAU	chr11:68343270-68343564(+)$1	294	260	268	15.3888
AUUGUUUU	chr3:141712236-141712536(-)$1	300	77	85	16.6388
aguuuuuU	chr1:19439217-19439498(-)$1	281	46	54	15.9444
AUUGUUUU	chr16:74685899-74686147(-)$1	248	68	76	16.6388
AUUUGUUU	chr1:40688309-40688562(+)$1	253	146	154	16.0833
AUAUUUUU	chr7:30656604-30656836(+)$1	232	20	28	15.9444
ACUUUUUU	chr2:61522083-61522312(-)$1	229	123	131	15.8055
AUUUUUCU	chr6:122734725-122734976(+)$1	251	200	208	15.3888
AUUUUUUU	chr17:40146828-40147124(-)$1	296	96	104	20.1805
AUUUUUUU	chr5:126865860-126866131(+)$1	271	258	266	20.1805
AUUUUUUU	chr6:160164581-160164844(+)$1	263	95	103	20.1805
AUUUUCUU	chr14:53175052-53175353(+)$1	301	134	142	16.0138
AGUUUUUU	chr2:175252275-175252576(-)$1	301	244	252	15.9444
aucuuuuu	chr7:156956402-156956688(+)$1	286	6	14	16.1527
AUUUUUUU	chr2:15735556-15735821(+)$1	265	11	19	20.1805
AUUCUUUU	chr3:119180399-119180620(-)$1	221	136	144	16.4305
AUUUCUUU	chr5:137281557-137281808(-)$1	251	99	107	15.9444
AUUUUCUU	chr1:145440792-145441050(+)$1	258	95	103	16.0138
AUUUUCUU	chr2:170470834-170471100(+)$1	266	58	66	16.0138
AUUAUUUU	chr4:57265432-57265681(-)$1	249	7	15	16.3611
AUCUUUUU	chr2:183841546-183841789(-)$1	243	83	91	16.1527
AUUUUUUA	chr18:33749904-33750169(+)$1	265	6	14	15.8055
auuauuuu	chr8:95526943-95527213(-)$1	270	16	24	16.3611
AUUUUUUU	chr1:225602859-225603146(-)$1	287	95	103	20.1805
AGUUUUUU	chr17:19861756-19862028(-)$1	272	1	9	15.9444
AUUUUUUU	chr4:83772618-83772882(-)$1	264	110	118	20.1805
AUUUGUUU	chr16:85696834-85697091(+)$1	257	92	100	16.0833
AUUAUUUU	chr4:71835507-71835787(+)$1	280	270	278	16.3611
AUUUGUUU	chr5:118433664-118433968(+)$1	304	161	169	16.0833
AUUUUUUU	chr1:100525329-100525576(+)$1	247	80	88	20.1805
AUCUUUUU	chr7:73663965-73664211(-)$1	246	37	45	16.1527
AUUUUGUU	chr9:86586432-86586657(-)$1	225	179	187	16.1527
AUUUUUUU	chr8:64087737-64088051(+)$1	314	142	150	20.1805
AUCUUUUU	chr9:131720163-131720463(+)$1	300	59	67	16.1527
AUUUUUUU	chr3:150276056-150276354(+)$1	298	59	67	20.1805
AUUUUGUU	chr7:104785593-104785865(-)$1	272	88	96	16.1527

#otherMatches

#Struct PSSM
::ffffff	chr1:46124687-46124932(-)$1	245	102	110	16.6388
DD::ffff	chr1:70716188-70716474(+)$1	286	14	22	16.0138
:JJJJJJJ	chr18:33744312-33744563(+)$1	251	1	9	20.1805
::::::::	chr1:173834225-173834436(-)$1	211	87	95	20.1805
77hhhhhh	chr6:136592974-136593218(-)$1	244	103	111	20.1805
mmmmbb]f	chr1:19491998-19492224(-)$1	226	103	111	15.9444
%hhhhhhh	chr2:70143098-70143393(+)$1	295	53	61	16.4305
4ccc22ii	chr7:104715151-104715456(+)$1	305	226	234	15.9444
d[bb"""e	chr10:17738660-17738905(+)$1	245	92	100	16.6388
[ffffff"	chr1:52212267-52212569(+)$1	302	95	103	15.8055
>>>>>>>>	chr3:185637088-185637421(-)$1	333	81	89	15.7361
======]e	chr4:83347056-83347306(-)$1	250	230	238	15.8055
JJJJccco	chr11:68358024-68358277(+)$1	253	86	94	16.1527
::::::::	chr1:161183815-161184073(+)$1	258	57	65	15.8055
{HHHHHHH	chr12:72004742-72004985(-)$1	243	38	46	16.1527
gggg:III	chr2:135815465-135815787(+)$1	322	282	290	15.9444
::::::::	chr11:120307908-120308220(+)$1	312	27	35	20.1805
======&&	chrX:53654704-53654952(-)$1	248	92	100	16.6388
nnnbb22=	chr1:28834533-28834804(+)$1	271	155	163	16.6388
uuuuuuff	chr2:153547361-153547596(-)$1	235	95	103	15.8055
JJJJgggg	chr20:34319690-34319938(-)$1	248	168	176	20.1805
iiiiii::	chr5:158585925-158586152(-)$1	227	87	95	16.1527
$$gggggg	chr1:46083631-46083916(+)$1	285	231	239	15.5972
ddddoooo	chr1:182850509-182850787(+)$1	278	134	142	16.0138
c!!aqqqq	chr12:56680125-56680396(-)$1	271	238	246	16.4305
========	chr5:33448531-33448772(+)$1	241	28	36	16.6388
ee[eeeee	chr7:138943907-138944208(+)$1	301	85	93	16.4305
hhh4444e	chr5:118437479-118437781(+)$1	302	79	87	15.9444
=$$$$$ee	chr11:85737282-85737490(-)$1	208	66	74	20.1805
fffff###	chr18:2700408-2700676(+)$1	268	99	107	16.1527
gggggggg	chr2:152273082-152273335(+)$1	253	216	224	16.0138
b!!iiiii	chr2:135815596-135815844(+)$1	248	151	159	15.9444
dddd::::	chr9:114182302-114182576(-)$1	274	119	127	20.1805
JJJJJJJJ	chr1:186336835-186337052(-)$1	217	128	136	20.1805
:::DDDDK	chr2:38810940-38811193(-)$1	253	0	8	15.8749
EEEEE::d	chr4:128812140-128812399(+)$1	259	3	11	16.0833
@@@@@@@@	chr11:68343270-68343564(+)$1	294	260	268	15.3888
2fffffff	chr3:141712236-141712536(-)$1	300	77	85	16.6388
"eeeeemm	chr1:19439217-19439498(-)$1	281	46	54	15.9444
wwwwwwww	chr16:74685899-74686147(-)$1	248	68	76	16.6388
::::dddd	chr1:40688309-40688562(+)$1	253	146	154	16.0833
::::::::	chr7:30656604-30656836(+)$1	232	20	28	15.9444
::::::::	chr2:61522083-61522312(-)$1	229	123	131	15.8055
cc666666	chr6:122734725-122734976(+)$1	251	200	208	15.3888
bdddd!!b	chr17:40146828-40147124(-)$1	296	96	104	20.1805
::::::::	chr5:126865860-126866131(+)$1	271	258	266	20.1805
gggg::::	chr6:160164581-160164844(+)$1	263	95	103	20.1805
IIIIIIII	chr14:53175052-53175353(+)$1	301	134	142	16.0138
ccmmmmcc	chr2:175252275-175252576(-)$1	301	244	252	15.9444
ddddoooo	chr7:156956402-156956688(+)$1	286	6	14	16.1527
IIIIII{H	chr2:15735556-15735821(+)$1	265	11	19	20.1805
[ddddooo	chr3:119180399-119180620(-)$1	221	136	144	16.4305
ff[a====	chr5:137281557-137281808(-)$1	251	99	107	15.9444
d333dddd	chr1:145440792-145441050(+)$1	258	95	103	16.0138
e:::::::	chr2:170470834-170471100(+)$1	266	58	66	16.0138
::::::::	chr4:57265432-57265681(-)$1	249	7	15	16.3611
GGGG::::	chr2:183841546-183841789(-)$1	243	83	91	16.1527
FFFFRRRR	chr18:33749904-33750169(+)$1	265	6	14	15.8055
HHHHRRRR	chr8:95526943-95527213(-)$1	270	16	24	16.3611
:::::::h	chr1:225602859-225603146(-)$1	287	95	103	20.1805
::::::::	chr17:19861756-19862028(-)$1	272	1	9	15.9444
b0000000	chr4:83772618-83772882(-)$1	264	110	118	20.1805
KKDDDDKK	chr16:85696834-85697091(+)$1	257	92	100	16.0833
::::::::	chr4:71835507-71835787(+)$1	280	270	278	16.3611
++++++++	chr5:118433664-118433968(+)$1	304	161	169	16.0833
PPPPEEEE	chr1:100525329-100525576(+)$1	247	80	88	20.1805
^^^^^^^^	chr7:73663965-73664211(-)$1	246	37	45	16.1527
nneeeee2	chr9:86586432-86586657(-)$1	225	179	187	16.1527
88gggggg	chr8:64087737-64088051(+)$1	314	142	150	20.1805
aooooooa	chr9:131720163-131720463(+)$1	300	59	67	16.1527
emmmmeee	chr3:150276056-150276354(+)$1	298	59	67	20.1805
FFFFFFFF	chr7:104785593-104785865(-)$1	272	88	96	16.1527

#DB
..((((((	chr1:46124687-46124932(-)$1	1	102	110	16.6388
((..((((	chr1:70716188-70716474(+)$1	1	14	22	16.0138
.(((((((	chr18:33744312-33744563(+)$1	1	1	9	20.1805
........	chr1:173834225-173834436(-)$1	1	87	95	20.1805
..))))))	chr6:136592974-136593218(-)$1	1	103	111	20.1805
....)).)	chr1:19491998-19492224(-)$1	1	103	111	15.9444
.(((((((	chr2:70143098-70143393(+)$1	1	53	61	16.4305
.)))..))	chr7:104715151-104715456(+)$1	1	226	234	15.9444
(.((...(	chr10:17738660-17738905(+)$1	1	92	100	16.6388
.((((((.	chr1:52212267-52212569(+)$1	1	95	103	15.8055
........	chr3:185637088-185637421(-)$1	1	81	89	15.7361
)))))).)	chr4:83347056-83347306(-)$1	1	230	238	15.8055
(((((((.	chr11:68358024-68358277(+)$1	1	86	94	16.1527
........	chr1:161183815-161184073(+)$1	1	57	65	15.8055
.(((((((	chr12:72004742-72004985(-)$1	1	38	46	16.1527
)))).)))	chr2:135815465-135815787(+)$1	1	282	290	15.9444
........	chr11:120307908-120308220(+)$1	1	27	35	20.1805
((((((..	chrX:53654704-53654952(-)$1	1	92	100	16.6388
...))..)	chr1:28834533-28834804(+)$1	1	155	163	16.6388
......))	chr2:153547361-153547596(-)$1	1	95	103	15.8055
((((((((	chr20:34319690-34319938(-)$1	1	168	176	20.1805
))))))..	chr5:158585925-158586152(-)$1	1	87	95	16.1527
..((((((	chr1:46083631-46083916(+)$1	1	231	239	15.5972
((((....	chr1:182850509-182850787(+)$1	1	134	142	16.0138
(..(....	chr12:56680125-56680396(-)$1	1	238	246	16.4305
((((((((	chr5:33448531-33448772(+)$1	1	28	36	16.6388
((.(((((	chr7:138943907-138944208(+)$1	1	85	93	16.4305
)))....)	chr5:118437479-118437781(+)$1	1	79	87	15.9444
(.....((	chr11:85737282-85737490(-)$1	1	66	74	20.1805
(((((...	chr18:2700408-2700676(+)$1	1	99	107	16.1527
((((((((	chr2:152273082-152273335(+)$1	1	216	224	16.0138
(..(((((	chr2:135815596-135815844(+)$1	1	151	159	15.9444
))))....	chr9:114182302-114182576(-)$1	1	119	127	20.1805
))))))))	chr1:186336835-186337052(-)$1	1	128	136	20.1805
...((((.	chr2:38810940-38811193(-)$1	1	0	8	15.8749
(((((..(	chr4:128812140-128812399(+)$1	1	3	11	16.0833
........	chr11:68343270-68343564(+)$1	1	260	268	15.3888
.)))))))	chr3:141712236-141712536(-)$1	1	77	85	16.6388
.(((((..	chr1:19439217-19439498(-)$1	1	46	54	15.9444
........	chr16:74685899-74686147(-)$1	1	68	76	16.6388
....((((	chr1:40688309-40688562(+)$1	1	146	154	16.0833
........	chr7:30656604-30656836(+)$1	1	20	28	15.9444
........	chr2:61522083-61522312(-)$1	1	123	131	15.8055
))......	chr6:122734725-122734976(+)$1	1	200	208	15.3888
(((((..(	chr17:40146828-40147124(-)$1	1	96	104	20.1805
........	chr5:126865860-126866131(+)$1	1	258	266	20.1805
))))....	chr6:160164581-160164844(+)$1	1	95	103	20.1805
))))))))	chr14:53175052-53175353(+)$1	1	134	142	16.0138
((....))	chr2:175252275-175252576(-)$1	1	244	252	15.9444
((((....	chr7:156956402-156956688(+)$1	1	6	14	16.1527
((((((.(	chr2:15735556-15735821(+)$1	1	11	19	20.1805
.((((...	chr3:119180399-119180620(-)$1	1	136	144	16.4305
((.(((((	chr5:137281557-137281808(-)$1	1	99	107	15.9444
)...))))	chr1:145440792-145441050(+)$1	1	95	103	16.0138
).......	chr2:170470834-170471100(+)$1	1	58	66	16.0138
........	chr4:57265432-57265681(-)$1	1	7	15	16.3611
((((....	chr2:183841546-183841789(-)$1	1	83	91	16.1527
((((....	chr18:33749904-33750169(+)$1	1	6	14	15.8055
((((....	chr8:95526943-95527213(-)$1	1	16	24	16.3611
.......(	chr1:225602859-225603146(-)$1	1	95	103	20.1805
........	chr17:19861756-19862028(-)$1	1	1	9	15.9444
).......	chr4:83772618-83772882(-)$1	1	110	118	20.1805
..((((..	chr16:85696834-85697091(+)$1	1	92	100	16.0833
........	chr4:71835507-71835787(+)$1	1	270	278	16.3611
........	chr5:118433664-118433968(+)$1	1	161	169	16.0833
....((((	chr1:100525329-100525576(+)$1	1	80	88	20.1805
........	chr7:73663965-73664211(-)$1	1	37	45	16.1527
..))))).	chr9:86586432-86586657(-)$1	1	179	187	16.1527
..))))))	chr8:64087737-64088051(+)$1	1	142	150	20.1805
(......)	chr9:131720163-131720463(+)$1	1	59	67	16.1527
(....)))	chr3:150276056-150276354(+)$1	1	59	67	20.1805
((((((((	chr7:104785593-104785865(-)$1	1	88	96	16.1527

#PSSM
A : 0.94	a : 0.05	
U : 0.84	u : 0.05	G : 0.04	C : 0.02	A : 0.01	g : 0.01	
U : 0.81	u : 0.05	C : 0.05	A : 0.02	G : 0.02	c : 0.01	
U : 0.74	G : 0.09	u : 0.05	C : 0.05	A : 0.02	a : 0.01	
U : 0.80	u : 0.06	G : 0.05	A : 0.04	C : 0.02	
U : 0.81	G : 0.06	u : 0.05	C : 0.04	a : 0.01	
U : 0.90	u : 0.06	A : 0.01	C : 0.01	
U : 0.87	u : 0.05	A : 0.05	C : 0.01	

#score	1228.555555555554
#seq	72
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_UTR_m3_run2.nuc.txt

#NT
gcacacacacU	chr11:2152674-2152876(-)$1	202	106	117	27.7656
gcacacacacg	chr11:2152564-2152766(-)$1	202	99	110	26.9062
gcacacacaca	chr9:97845400-97845637(+)$1	237	179	190	30.1875
gcacacacaca	chr11:2152609-2152812(-)$1	203	4	15	30.1875
gcacacacaca	chr11:2152756-2152961(-)$1	205	29	40	30.1875
gcacacacaca	chr11:2152780-2152983(-)$1	203	51	62	30.1875
acacacacaca	chr11:2153232-2153436(-)$1	204	101	112	27.1406
gcacacacacg	chr11:2152541-2152754(-)$1	213	87	98	26.9062
acacacacaca	chr11:2153285-2153492(-)$1	207	157	168	27.1406
gcacacacaca	chr11:2153098-2153304(-)$1	206	21	32	30.1875
gcacacacaca	chr11:2152735-2152941(-)$1	206	9	20	30.1875
gcacacacacU	chr11:2152568-2152770(-)$1	202	0	11	27.7656
acacacacaca	chr11:2153238-2153441(-)$1	203	106	117	27.1406
gcacacacaca	chr11:2152804-2153006(-)$1	202	74	85	30.1875
gcacacacaca	chr11:2153075-2153280(-)$1	205	44	55	30.1875
gcacacacaca	chr9:97845569-97845822(+)$1	253	10	21	30.1875
gcacacacaca	chr11:2152776-2152980(-)$1	204	48	59	30.1875
gcacacacaca	chr21:46915606-46915877(+)$1	271	27	38	30.1875
gcacacacacu	chr11:2153003-2153205(-)$1	202	173	184	27.7656
gcacacacacU	chr11:2152570-2152772(-)$1	202	2	13	27.7656
gcacacacacu	chr11:2152984-2153186(-)$1	202	154	165	27.7656
gcacacacaca	chr11:2152766-2152968(-)$1	202	36	47	30.1875
acacacacaca	chr11:2153255-2153457(-)$1	202	122	133	27.1406
gcauacacaca	chr13:113539202-113539460(+)$1	258	186	197	25.6562
gcacacacaca	chr11:2153090-2153292(-)$1	202	9	20	30.1875
acacacacaca	chr11:2153205-2153409(-)$1	204	74	85	27.1406
gcacacacacg	chr11:2152487-2152689(-)$1	202	22	33	26.9062
gcacacacaca	chr11:2152764-2152966(-)$1	202	34	45	30.1875
gcacacacaca	chr13:113773797-113774081(+)$1	284	225	236	30.1875
gcacacacaca	chr11:2152648-2152852(-)$1	204	44	55	30.1875
gcacacacacU	chr11:2152708-2152910(-)$1	202	140	151	27.7656
gcacacacaca	chr11:2153171-2153376(-)$1	205	140	151	30.1875
gcacacacacc	chr9:97845830-97846042(+)$1	212	0	11	26.8281
gcacacacacU	chr11:2152688-2152893(-)$1	205	123	134	27.7656
gcacacacacc	chr9:97845622-97845880(+)$1	258	145	156	26.8281
gcacacacacU	chr11:2152717-2152923(-)$1	206	153	164	27.7656
gcacacacacU	chr11:2152667-2152870(-)$1	203	100	111	27.7656
gcacacacacu	chr11:2152986-2153188(-)$1	202	156	167	27.7656
acacacacaca	chr1:36032180-36032431(+)$1	251	65	76	27.1406
acacacacaca	chr11:2153236-2153438(-)$1	202	103	114	27.1406
gcacacacaca	chr21:46915471-46915738(+)$1	267	162	173	30.1875
gcacacacaca	chr11:2153257-2153461(-)$1	204	178	189	30.1875
gcacacacaca	chr11:2152881-2153085(-)$1	204	72	83	30.1875
gcacacacacu	chr11:2153005-2153208(-)$1	203	176	187	27.7656
gcacacacaca	chr11:2152634-2152839(-)$1	205	31	42	30.1875
gcacacacaca	chr11:2152646-2152848(-)$1	202	40	51	30.1875
gcauacacaca	chr13:113539260-113539520(+)$1	260	128	139	25.6562
acacacacaca	chr11:2153217-2153424(-)$1	207	89	100	27.1406
gcacacacaca	chr11:2152598-2152802(-)$1	204	121	132	30.1875
acacacacaca	chr16:20708886-20709174(+)$1	288	16	27	27.1406
gcauacacaca	chr13:113539352-113539606(+)$1	254	36	47	25.6562
gcacacacacu	chr11:2153008-2153210(-)$1	202	178	189	27.7656
gcacacacaca	chr11:2152588-2152796(-)$1	208	115	126	30.1875
ucacacacaca	chr4:1019789-1020081(+)$1	292	5	16	26.2812
gcacacacaca	chr11:2152885-2153101(-)$1	216	88	99	30.1875
acacacacaca	chr19:47507115-47507372(+)$1	257	81	92	27.1406
gcacacacacU	chr11:2152714-2152917(-)$1	203	147	158	27.7656
gcacacacaca	chr11:2152639-2152844(-)$1	205	36	47	30.1875
acacacacaca	chr17:4618848-4619126(+)$1	278	1	12	27.1406
gcacacauaca	chr21:46915799-46916013(+)$1	214	66	77	25.3437
gcacacacaca	chr11:2153080-2153285(-)$1	205	2	13	30.1875
acacacacaca	chr11:2153277-2153479(-)$1	202	144	155	27.1406
gcacacacacu	chr11:2152999-2153201(-)$1	202	169	180	27.7656

#otherMatches

#Struct PSSM
hhh####cccq	chr21:46915580-46915803(+)$1	223	53	64	30.1875
bb[bbqqqqqq	chr11:2152674-2152876(-)$1	202	106	117	27.7656
dqqqqqqqqdd	chr11:2152564-2152766(-)$1	202	99	110	26.9062
E@@@@@@@@@@	chr9:97845400-97845637(+)$1	237	179	190	30.1875
:::::::::::	chr11:2152609-2152812(-)$1	203	4	15	30.1875
bb:::::::::	chr11:2152756-2152961(-)$1	205	29	40	30.1875
bb:::::::::	chr11:2152780-2152983(-)$1	203	51	62	30.1875
zzzzzzzzzzz	chr11:2153232-2153436(-)$1	204	101	112	27.1406
dqqqqqqqqdd	chr11:2152541-2152754(-)$1	213	87	98	26.9062
zzzzzzzzzzz	chr11:2153285-2153492(-)$1	207	157	168	27.1406
BB:::::::::	chr11:2153098-2153304(-)$1	206	21	32	30.1875
bb:::::::::	chr11:2152735-2152941(-)$1	206	9	20	30.1875
bb[bbqqqqqq	chr11:2152568-2152770(-)$1	202	0	11	27.7656
zzzzzzzzzzz	chr11:2153238-2153441(-)$1	203	106	117	27.1406
bb:::::::::	chr11:2152804-2153006(-)$1	202	74	85	30.1875
bb:::::::::	chr11:2153075-2153280(-)$1	205	44	55	30.1875
BB:::::::::	chr9:97845569-97845822(+)$1	253	10	21	30.1875
bb:::::::::	chr11:2152776-2152980(-)$1	204	48	59	30.1875
cc:::::::::	chr21:46915606-46915877(+)$1	271	27	38	30.1875
ccc::::::::	chr11:2153003-2153205(-)$1	202	173	184	27.7656
CC::::::::e	chr11:2152570-2152772(-)$1	202	2	13	27.7656
ccc::::::::	chr11:2152984-2153186(-)$1	202	154	165	27.7656
bb:::::::::	chr11:2152766-2152968(-)$1	202	36	47	30.1875
^^^^^^^^^^^	chr11:2153255-2153457(-)$1	202	122	133	27.1406
bb7777777ee	chr13:113539202-113539460(+)$1	258	186	197	25.6562
bbuuuuuuuuu	chr11:2153090-2153292(-)$1	202	9	20	30.1875
zzzzzzzzzzz	chr11:2153205-2153409(-)$1	204	74	85	27.1406
dqqqqqqqqdd	chr11:2152487-2152689(-)$1	202	22	33	26.9062
bb:::::::::	chr11:2152764-2152966(-)$1	202	34	45	30.1875
}BB::::::::	chr13:113773797-113774081(+)$1	284	225	236	30.1875
bb:::::::::	chr11:2152648-2152852(-)$1	204	44	55	30.1875
::::::::::e	chr11:2152708-2152910(-)$1	202	140	151	27.7656
bb:::::::::	chr11:2153171-2153376(-)$1	205	140	151	30.1875
:::::::::::	chr9:97845830-97846042(+)$1	212	0	11	26.8281
::::::::::e	chr11:2152688-2152893(-)$1	205	123	134	27.7656
:::::::::::	chr9:97845622-97845880(+)$1	258	145	156	26.8281
::::::::::E	chr11:2152717-2152923(-)$1	206	153	164	27.7656
::::::::::e	chr11:2152667-2152870(-)$1	203	100	111	27.7656
ccc::::::::	chr11:2152986-2153188(-)$1	202	156	167	27.7656
:::::::::::	chr1:36032180-36032431(+)$1	251	65	76	27.1406
zzzzzzzzzzz	chr11:2153236-2153438(-)$1	202	103	114	27.1406
GGGGGGG\\\\	chr21:46915471-46915738(+)$1	267	162	173	30.1875
bbuuuuuuuuu	chr11:2153257-2153461(-)$1	204	178	189	30.1875
bb:::::::::	chr11:2152881-2153085(-)$1	204	72	83	30.1875
BB:::::::::	chr11:2153005-2153208(-)$1	203	176	187	27.7656
bb:::::::::	chr11:2152634-2152839(-)$1	205	31	42	30.1875
bb:::::::::	chr11:2152646-2152848(-)$1	202	40	51	30.1875
dddd!!ddddo	chr13:113539260-113539520(+)$1	260	128	139	25.6562
zzzzzzzzzzz	chr11:2153217-2153424(-)$1	207	89	100	27.1406
cc:::::::::	chr11:2152598-2152802(-)$1	204	121	132	30.1875
:::::::::::	chr16:20708886-20709174(+)$1	288	16	27	27.1406
dddd!!ddddo	chr13:113539352-113539606(+)$1	254	36	47	25.6562
BB:::::::::	chr11:2153008-2153210(-)$1	202	178	189	27.7656
cc:::::::::	chr11:2152588-2152796(-)$1	208	115	126	30.1875
CC:::::::::	chr4:1019789-1020081(+)$1	292	5	16	26.2812
bb:::::::::	chr11:2152885-2153101(-)$1	216	88	99	30.1875
:::::::::::	chr19:47507115-47507372(+)$1	257	81	92	27.1406
::::::::::E	chr11:2152714-2152917(-)$1	203	147	158	27.7656
bb:::::::::	chr11:2152639-2152844(-)$1	205	36	47	30.1875
:::::::::::	chr17:4618848-4619126(+)$1	278	1	12	27.1406
cmmmmccc333	chr21:46915799-46916013(+)$1	214	66	77	25.3437
:::::::::::	chr11:2153080-2153285(-)$1	205	2	13	30.1875
zzzzzzzzzzz	chr11:2153277-2153479(-)$1	202	144	155	27.1406
ccc::::::::	chr11:2152999-2153201(-)$1	202	169	180	27.7656

#DB
(((....(((.	chr21:46915580-46915803(+)$1	1	53	64	30.1875
((.((......	chr11:2152674-2152876(-)$1	1	106	117	27.7656
(........))	chr11:2152564-2152766(-)$1	1	99	110	26.9062
)..........	chr9:97845400-97845637(+)$1	1	179	190	30.1875
...........	chr11:2152609-2152812(-)$1	1	4	15	30.1875
)).........	chr11:2152756-2152961(-)$1	1	29	40	30.1875
)).........	chr11:2152780-2152983(-)$1	1	51	62	30.1875
...........	chr11:2153232-2153436(-)$1	1	101	112	27.1406
(........))	chr11:2152541-2152754(-)$1	1	87	98	26.9062
...........	chr11:2153285-2153492(-)$1	1	157	168	27.1406
((.........	chr11:2153098-2153304(-)$1	1	21	32	30.1875
)).........	chr11:2152735-2152941(-)$1	1	9	20	30.1875
((.((......	chr11:2152568-2152770(-)$1	1	0	11	27.7656
...........	chr11:2153238-2153441(-)$1	1	106	117	27.1406
)).........	chr11:2152804-2153006(-)$1	1	74	85	30.1875
)).........	chr11:2153075-2153280(-)$1	1	44	55	30.1875
((.........	chr9:97845569-97845822(+)$1	1	10	21	30.1875
)).........	chr11:2152776-2152980(-)$1	1	48	59	30.1875
)).........	chr21:46915606-46915877(+)$1	1	27	38	30.1875
)))........	chr11:2153003-2153205(-)$1	1	173	184	27.7656
((........(	chr11:2152570-2152772(-)$1	1	2	13	27.7656
)))........	chr11:2152984-2153186(-)$1	1	154	165	27.7656
)).........	chr11:2152766-2152968(-)$1	1	36	47	30.1875
...........	chr11:2153255-2153457(-)$1	1	122	133	27.1406
)).......))	chr13:113539202-113539460(+)$1	1	186	197	25.6562
((.........	chr11:2153090-2153292(-)$1	1	9	20	30.1875
...........	chr11:2153205-2153409(-)$1	1	74	85	27.1406
(........))	chr11:2152487-2152689(-)$1	1	22	33	26.9062
)).........	chr11:2152764-2152966(-)$1	1	34	45	30.1875
.))........	chr13:113773797-113774081(+)$1	1	225	236	30.1875
)).........	chr11:2152648-2152852(-)$1	1	44	55	30.1875
..........(	chr11:2152708-2152910(-)$1	1	140	151	27.7656
)).........	chr11:2153171-2153376(-)$1	1	140	151	30.1875
...........	chr9:97845830-97846042(+)$1	1	0	11	26.8281
..........(	chr11:2152688-2152893(-)$1	1	123	134	27.7656
...........	chr9:97845622-97845880(+)$1	1	145	156	26.8281
..........)	chr11:2152717-2152923(-)$1	1	153	164	27.7656
..........(	chr11:2152667-2152870(-)$1	1	100	111	27.7656
)))........	chr11:2152986-2153188(-)$1	1	156	167	27.7656
...........	chr1:36032180-36032431(+)$1	1	65	76	27.1406
...........	chr11:2153236-2153438(-)$1	1	103	114	27.1406
)))))))....	chr21:46915471-46915738(+)$1	1	162	173	30.1875
((.........	chr11:2153257-2153461(-)$1	1	178	189	30.1875
)).........	chr11:2152881-2153085(-)$1	1	72	83	30.1875
)).........	chr11:2153005-2153208(-)$1	1	176	187	27.7656
)).........	chr11:2152634-2152839(-)$1	1	31	42	30.1875
)).........	chr11:2152646-2152848(-)$1	1	40	51	30.1875
((((..((((.	chr13:113539260-113539520(+)$1	1	128	139	25.6562
...........	chr11:2153217-2153424(-)$1	1	89	100	27.1406
)).........	chr11:2152598-2152802(-)$1	1	121	132	30.1875
...........	chr16:20708886-20709174(+)$1	1	16	27	27.1406
((((..((((.	chr13:113539352-113539606(+)$1	1	36	47	25.6562
)).........	chr11:2153008-2153210(-)$1	1	178	189	27.7656
)).........	chr11:2152588-2152796(-)$1	1	115	126	30.1875
((.........	chr4:1019789-1020081(+)$1	1	5	16	26.2812
)).........	chr11:2152885-2153101(-)$1	1	88	99	30.1875
...........	chr19:47507115-47507372(+)$1	1	81	92	27.1406
..........)	chr11:2152714-2152917(-)$1	1	147	158	27.7656
)).........	chr11:2152639-2152844(-)$1	1	36	47	30.1875
...........	chr17:4618848-4619126(+)$1	1	1	12	27.1406
(....)))...	chr21:46915799-46916013(+)$1	1	66	77	25.3437
...........	chr11:2153080-2153285(-)$1	1	2	13	30.1875
...........	chr11:2153277-2153479(-)$1	1	144	155	27.1406
)))........	chr11:2152999-2153201(-)$1	1	169	180	27.7656

#PSSM
g : 0.79	a : 0.18	u : 0.01	
c : 1.00	
a : 1.00	
c : 0.95	u : 0.04	
a : 1.00	
c : 1.00	
a : 1.00	
c : 0.98	u : 0.01	
a : 1.00	
c : 1.00	
a : 0.70	U : 0.12	u : 0.09	g : 0.04	c : 0.03	

#score	1822.625
#seq	64
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_CDS_m3_run2.nuc.txt

#NT
GCUGCAU	chr19:1621772-1622046(-)$1	274	85	92	12.7142
GCCGCAG	chr7:75684059-75684304(+)$1	245	214	221	13.3571
UCUGCAG	chr7:100274221-100274448(+)$1	227	41	48	13.6428
GCUGGAG	chr19:18684450-18684658(+)$1	208	64	71	13.2142
CCUGCAG	chrX:153582936-153583161(-)$1	225	75	82	13.8571
GCAGCAG	chrX:153581086-153581307(-)$1	221	174	181	13.6428
GCUGCCG	chr1:234744472-234744694(-)$1	222	78	85	12.9999
GCUGCAG	chr3:52027757-52028072(-)$1	315	236	243	17.2857
GCAGCAG	chr19:2217767-2218016(+)$1	249	25	32	13.6428
GCUGCUG	chr6:31603284-31603511(+)$1	227	113	120	13.2142
GCUGCAG	chr7:150644431-150644673(-)$1	242	64	71	17.2857
GCUGCAG	chr3:10353548-10353771(-)$1	223	178	185	17.2857
gcggcag	chr14:105886163-105886483(+)$1	320	80	87	13.5714
GCUGCAG	chr19:11132524-11132740(+)$1	216	63	70	17.2857
GCGGCAG	chr19:13210252-13210495(-)$1	243	2	9	13.5714
GCUGCUG	chr1:234744203-234744436(-)$1	233	119	126	13.2142
GGUGCAG	chr19:50308708-50308932(+)$1	224	53	60	12.8571
GCUGCUG	chr19:39208527-39208765(+)$1	238	95	102	13.2142
CCUGCAG	chr17:39925591-39925855(-)$1	264	53	60	13.8571
GCUGCAG	chr22:36690047-36690300(-)$1	253	33	40	17.2857
GCUGCGG	chr17:80053095-80053297(-)$1	202	55	62	12.9285
CCUGCAG	chr16:88793378-88793625(-)$1	247	18	25	13.8571
GCUGCCG	chr20:372039-372295(+)$1	256	74	81	12.9999
GCGGCAG	chr19:1621037-1621286(-)$1	249	45	52	13.5714
GCUGCUG	chr8:144990855-144991079(-)$1	224	20	27	13.2142
GCUGCAG	chr16:767015-767278(+)$1	263	95	102	17.2857
GCGGCAG	chr19:50302824-50303122(+)$1	298	81	88	13.5714
GCUGCAU	chr22:50898862-50899098(-)$1	236	19	26	12.7142
UCUGCAG	chr19:3976612-3976824(-)$1	212	72	79	13.6428
GCCGCAG	chr20:32880065-32880279(-)$1	214	183	190	13.3571
GCUGCAU	chr16:28856224-28856472(-)$1	248	127	134	12.7142
GCUUCAG	chr11:811496-811711(+)$1	215	93	100	12.4999
GCUGCAG	chr16:84623630-84623894(-)$1	264	129	136	17.2857
GGUGCAG	chr19:10226620-10226851(-)$1	231	111	118	12.8571
GCUGCAG	chr1:22211742-22211970(-)$1	228	152	159	17.2857
GCUGCAG	chr3:53289847-53290119(-)$1	272	193	200	17.2857
GCUGCAG	chr2:96950820-96951051(-)$1	231	73	80	17.2857
GCUGUAG	chr12:994360-994604(+)$1	244	26	33	12.9285
GCUGAAG	chr19:14554300-14554533(+)$1	233	72	79	12.9999
UCUGCAG	chr19:3976601-3976812(-)$1	211	60	67	13.6428
GCUGCAG	chr3:53289751-53289958(-)$1	207	32	39	17.2857
GCUGCAG	chr19:50906241-50906498(+)$1	257	228	235	17.2857
GCUGCAG	chr8:145005602-145005853(-)$1	251	67	74	17.2857
GCUGGAG	chr10:100190787-100191001(-)$1	214	3	10	13.2142
CCUGCAG	chr16:30080542-30080758(+)$1	216	77	84	13.8571
CCUGCAG	chr11:8705496-8705728(+)$1	232	49	56	13.8571
GGUGCAG	chr19:39214970-39215199(+)$1	229	99	106	12.8571
GCAGCAG	chr22:22277517-22277762(-)$1	245	75	82	13.6428
GCUGCAG	chrX:55041163-55041411(-)$1	248	34	41	17.2857
GCUGCAG	chr2:97541864-97542140(-)$1	276	31	38	17.2857
GCAGCAG	chrX:153581039-153581263(-)$1	224	130	137	13.6428
CCUGCAG	chr16:2293054-2293322(-)$1	268	148	155	13.8571
GCUGCAG	chr11:63978423-63978645(+)$1	222	55	62	17.2857
GCUGAAG	chr8:144406552-144406795(-)$1	243	134	141	12.9999
GCAGCAG	chr15:91455761-91455995(+)$1	234	39	46	13.6428
GCUGCAG	chr3:53289790-53290010(-)$1	220	84	91	17.2857
GCGGCAG	chr8:144943079-144943311(-)$1	232	18	25	13.5714
UCUGCAG	chr19:3976557-3976778(-)$1	221	26	33	13.6428
GCUGGAG	chr5:149826293-149826528(-)$1	235	217	224	13.2142
CCUGCAG	chr12:124911219-124911447(-)$1	228	94	101	13.8571
GCUGCAG	chr11:65820046-65820281(+)$1	235	122	129	17.2857
CCUGCAG	chr16:88873400-88873635(+)$1	235	157	164	13.8571
GCUCCAG	chr1:1721905-1722135(-)$1	230	93	100	12.4999
GCUGGAG	chr12:124826351-124826597(-)$1	246	74	81	13.2142
UCUGCAG	chr1:109804034-109804253(+)$1	219	209	216	13.6428
GCUGCUG	chr9:133759916-133760170(+)$1	254	137	144	13.2142
GGUGCAG	chr22:39413864-39414138(+)$1	274	213	220	12.8571
GCUGGAG	chr6:74228569-74228779(-)$1	210	106	113	13.2142
GCAGCAG	chr1:234744817-234745058(-)$1	241	96	103	13.6428

#otherMatches

#Struct PSSM
fffff!!	chr3:53268949-53269159(-)$1	210	113	120	13.3571
:DDDD{F	chr19:1621772-1622046(-)$1	274	85	92	12.7142
eebbooo	chr7:75684059-75684304(+)$1	245	214	221	13.3571
ffff22d	chr7:100274221-100274448(+)$1	227	41	48	13.6428
eeeee::	chr19:18684450-18684658(+)$1	208	64	71	13.2142
FFFFYYB	chrX:153582936-153583161(-)$1	225	75	82	13.8571
d[bb"""	chrX:153581086-153581307(-)$1	221	174	181	13.6428
GGGGG::	chr1:234744472-234744694(-)$1	222	78	85	12.9999
}CCC}FF	chr3:52027757-52028072(-)$1	315	236	243	17.2857
FFFFF{B	chr19:2217767-2218016(+)$1	249	25	32	13.6428
JJJJJJa	chr6:31603284-31603511(+)$1	227	113	120	13.2142
ee[bb[c	chr7:150644431-150644673(-)$1	242	64	71	17.2857
AA}DDDD	chr3:10353548-10353771(-)$1	223	178	185	17.2857
JJJJ::d	chr14:105886163-105886483(+)$1	320	80	87	13.5714
ffffeee	chr19:11132524-11132740(+)$1	216	63	70	17.2857
=======	chr19:13210252-13210495(-)$1	243	2	9	13.5714
cc]ccc]	chr1:234744203-234744436(-)$1	233	119	126	13.2142
dda[a[=	chr19:50308708-50308932(+)$1	224	53	60	12.8571
GKKDDDD	chr19:39208527-39208765(+)$1	238	95	102	13.2142
444a]ee	chr17:39925591-39925855(-)$1	264	53	60	13.8571
]dddd::	chr22:36690047-36690300(-)$1	253	33	40	17.2857
bb[eeee	chr17:80053095-80053297(-)$1	202	55	62	12.9285
DDDeeee	chr16:88793378-88793625(-)$1	247	18	25	13.8571
dddhhhh	chr20:372039-372295(+)$1	256	74	81	12.9999
e[ccc[b	chr19:1621037-1621286(-)$1	249	45	52	13.5714
''''''h	chr8:144990855-144991079(-)$1	224	20	27	13.2142
dddd22d	chr16:767015-767278(+)$1	263	95	102	17.2857
[bbmmmm	chr19:50302824-50303122(+)$1	298	81	88	13.5714
fffnnnn	chr22:50898862-50899098(-)$1	236	19	26	12.7142
qqqbbdd	chr19:3976612-3976824(-)$1	212	72	79	13.6428
cc]hhhh	chr20:32880065-32880279(-)$1	214	183	190	13.3571
fffff!!	chr16:28856224-28856472(-)$1	248	127	134	12.7142
dlllddd	chr11:811496-811711(+)$1	215	93	100	12.4999
bbmmmmb	chr16:84623630-84623894(-)$1	264	129	136	17.2857
IIIIIII	chr19:10226620-10226851(-)$1	231	111	118	12.8571
ggggCCC	chr1:22211742-22211970(-)$1	228	152	159	17.2857
ddddddd	chr3:53289847-53290119(-)$1	272	193	200	17.2857
mmmccc2	chr2:96950820-96951051(-)$1	231	73	80	17.2857
ddddqqq	chr12:994360-994604(+)$1	244	26	33	12.9285
DDDD{DD	chr19:14554300-14554533(+)$1	233	72	79	12.9999
qqqbbdd	chr19:3976601-3976812(-)$1	211	60	67	13.6428
ddddddd	chr3:53289751-53289958(-)$1	207	32	39	17.2857
]bb]a22	chr19:50906241-50906498(+)$1	257	228	235	17.2857
:::dddd	chr8:145005602-145005853(-)$1	251	67	74	17.2857
KKEEEEE	chr10:100190787-100191001(-)$1	214	3	10	13.2142
ffffff:	chr16:30080542-30080758(+)$1	216	77	84	13.8571
dddffff	chr11:8705496-8705728(+)$1	232	49	56	13.8571
ee####c	chr19:39214970-39215199(+)$1	229	99	106	12.8571
cc[dddd	chr22:22277517-22277762(-)$1	245	75	82	13.6428
bb]cccc	chrX:55041163-55041411(-)$1	248	34	41	17.2857
BBNNNNN	chr2:97541864-97542140(-)$1	276	31	38	17.2857
d[bb"""	chrX:153581039-153581263(-)$1	224	130	137	13.6428
YHHHHHH	chr16:2293054-2293322(-)$1	268	148	155	13.8571
ccdddde	chr11:63978423-63978645(+)$1	222	55	62	17.2857
sssssss	chr8:144406552-144406795(-)$1	243	134	141	12.9999
d:::DDD	chr15:91455761-91455995(+)$1	234	39	46	13.6428
ddddddd	chr3:53289790-53290010(-)$1	220	84	91	17.2857
eemmmme	chr8:144943079-144943311(-)$1	232	18	25	13.5714
::CCC{B	chr19:3976557-3976778(-)$1	221	26	33	13.6428
hhmmmmh	chr5:149826293-149826528(-)$1	235	217	224	13.2142
bbsssss	chr12:124911219-124911447(-)$1	228	94	101	13.8571
eeeFFFF	chr11:65820046-65820281(+)$1	235	122	129	17.2857
###ccc[	chr16:88873400-88873635(+)$1	235	157	164	13.8571
bb333dd	chr1:1721905-1722135(-)$1	230	93	100	12.4999
eeeeemm	chr12:124826351-124826597(-)$1	246	74	81	13.2142
EEEEE}C	chr1:109804034-109804253(+)$1	219	209	216	13.6428
GGGGGGG	chr9:133759916-133760170(+)$1	254	137	144	13.2142
ee22bb]	chr22:39413864-39414138(+)$1	274	213	220	12.8571
oobb22d	chr6:74228569-74228779(-)$1	210	106	113	13.2142
bbbb]cc	chr1:234744817-234745058(-)$1	241	96	103	13.6428

#DB
(((((..	chr3:53268949-53269159(-)$1	1	113	120	13.3571
.((((.(	chr19:1621772-1622046(-)$1	1	85	92	12.7142
((((...	chr7:75684059-75684304(+)$1	1	214	221	13.3571
))))..)	chr7:100274221-100274448(+)$1	1	41	48	13.6428
)))))..	chr19:18684450-18684658(+)$1	1	64	71	13.2142
))))..)	chrX:153582936-153583161(-)$1	1	75	82	13.8571
(.((...	chrX:153581086-153581307(-)$1	1	174	181	13.6428
(((((..	chr1:234744472-234744694(-)$1	1	78	85	12.9999
.))).))	chr3:52027757-52028072(-)$1	1	236	243	17.2857
(((((.(	chr19:2217767-2218016(+)$1	1	25	32	13.6428
(((((((	chr6:31603284-31603511(+)$1	1	113	120	13.2142
((.((.(	chr7:150644431-150644673(-)$1	1	64	71	17.2857
)).))))	chr3:10353548-10353771(-)$1	1	178	185	17.2857
((((..(	chr14:105886163-105886483(+)$1	1	80	87	13.5714
(((((((	chr19:11132524-11132740(+)$1	1	63	70	17.2857
(((((((	chr19:13210252-13210495(-)$1	1	2	9	13.5714
)).))).	chr1:234744203-234744436(-)$1	1	119	126	13.2142
(((.(.(	chr19:50308708-50308932(+)$1	1	53	60	12.8571
(..((((	chr19:39208527-39208765(+)$1	1	95	102	13.2142
...).))	chr17:39925591-39925855(-)$1	1	53	60	13.8571
.))))..	chr22:36690047-36690300(-)$1	1	33	40	17.2857
((.((((	chr17:80053095-80053297(-)$1	1	55	62	12.9285
(((((((	chr16:88793378-88793625(-)$1	1	18	25	13.8571
)))((((	chr20:372039-372295(+)$1	1	74	81	12.9999
(.(((.(	chr19:1621037-1621286(-)$1	1	45	52	13.5714
......(	chr8:144990855-144991079(-)$1	1	20	27	13.2142
))))..)	chr16:767015-767278(+)$1	1	95	102	17.2857
.((....	chr19:50302824-50303122(+)$1	1	81	88	13.5714
(((....	chr22:50898862-50899098(-)$1	1	19	26	12.7142
...))))	chr19:3976612-3976824(-)$1	1	72	79	13.6428
)).))))	chr20:32880065-32880279(-)$1	1	183	190	13.3571
(((((..	chr16:28856224-28856472(-)$1	1	127	134	12.7142
(...)))	chr11:811496-811711(+)$1	1	93	100	12.4999
((....)	chr16:84623630-84623894(-)$1	1	129	136	17.2857
)))))))	chr19:10226620-10226851(-)$1	1	111	118	12.8571
)))))))	chr1:22211742-22211970(-)$1	1	152	159	17.2857
)))))))	chr3:53289847-53290119(-)$1	1	193	200	17.2857
...))).	chr2:96950820-96951051(-)$1	1	73	80	17.2857
((((...	chr12:994360-994604(+)$1	1	26	33	12.9285
((((.((	chr19:14554300-14554533(+)$1	1	72	79	12.9999
...))))	chr19:3976601-3976812(-)$1	1	60	67	13.6428
)))))))	chr3:53289751-53289958(-)$1	1	32	39	17.2857
.)).)..	chr19:50906241-50906498(+)$1	1	228	235	17.2857
...((((	chr8:145005602-145005853(-)$1	1	67	74	17.2857
..(((((	chr10:100190787-100191001(-)$1	1	3	10	13.2142
)))))).	chr16:30080542-30080758(+)$1	1	77	84	13.8571
)))((((	chr11:8705496-8705728(+)$1	1	49	56	13.8571
((....(	chr19:39214970-39215199(+)$1	1	99	106	12.8571
((.((((	chr22:22277517-22277762(-)$1	1	75	82	13.6428
)).)))(	chrX:55041163-55041411(-)$1	1	34	41	17.2857
((.....	chr2:97541864-97542140(-)$1	1	31	38	17.2857
(.((...	chrX:153581039-153581263(-)$1	1	130	137	13.6428
.))))))	chr16:2293054-2293322(-)$1	1	148	155	13.8571
)))))))	chr11:63978423-63978645(+)$1	1	55	62	17.2857
.......	chr8:144406552-144406795(-)$1	1	134	141	12.9999
)...(((	chr15:91455761-91455995(+)$1	1	39	46	13.6428
)))))))	chr3:53289790-53290010(-)$1	1	84	91	17.2857
((....)	chr8:144943079-144943311(-)$1	1	18	25	13.5714
..(((.(	chr19:3976557-3976778(-)$1	1	26	33	13.6428
((....)	chr5:149826293-149826528(-)$1	1	217	224	13.2142
((.....	chr12:124911219-124911447(-)$1	1	94	101	13.8571
)))))))	chr11:65820046-65820281(+)$1	1	122	129	17.2857
...(((.	chr16:88873400-88873635(+)$1	1	157	164	13.8571
))...))	chr1:1721905-1722135(-)$1	1	93	100	12.4999
(((((..	chr12:124826351-124826597(-)$1	1	74	81	13.2142
))))).)	chr1:109804034-109804253(+)$1	1	209	216	13.6428
(((((((	chr9:133759916-133760170(+)$1	1	137	144	13.2142
))..)).	chr22:39413864-39414138(+)$1	1	213	220	12.8571
..))..)	chr6:74228569-74228779(-)$1	1	106	113	13.2142
)))).))	chr1:234744817-234745058(-)$1	1	96	103	13.6428

#PSSM
G : 0.78	C : 0.11	U : 0.07	A : 0.01	g : 0.01	
C : 0.92	G : 0.05	c : 0.01	
U : 0.81	A : 0.08	G : 0.05	C : 0.02	g : 0.01	
G : 0.95	g : 0.01	U : 0.01	C : 0.01	
C : 0.87	G : 0.07	A : 0.02	c : 0.01	U : 0.01	
A : 0.87	U : 0.07	C : 0.02	a : 0.01	G : 0.01	
G : 0.94	U : 0.04	g : 0.01	

#score	1004.5714285714272
#seq	70
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_transcript_m1_run2.nuc.txt

#NT
UAAA	chr16:69675142-69675411(+)$1	269	179	183	12.0000
UAAA	chr20:45837960-45838209(-)$1	249	183	187	12.0000
UAAA	chr2:113421171-113421420(+)$1	249	7	11	12.0000
UAAA	chr2:242434340-242434642(-)$1	302	190	194	12.0000
UAAA	chr2:70438798-70439029(-)$1	231	67	71	12.0000
UAAA	chr20:62374595-62374865(+)$1	270	239	243	12.0000
UAAA	chr16:31202266-31202521(+)$1	255	174	178	12.0000
UAAA	chr5:6599259-6599509(-)$1	250	1	5	12.0000
uaaa	chrX:151121843-151122139(-)$1	296	25	29	12.0000
UAAA	chr2:198256688-198256986(-)$1	298	4	8	12.0000
UAAA	chr9:139296669-139296966(-)$1	297	121	125	12.0000
UAAA	chr16:2652758-2653015(+)$1	257	26	30	12.0000
UAAA	chr17:79876192-79876487(-)$1	295	70	74	12.0000
UAAA	chr2:99216765-99217119(-)$1	354	70	74	12.0000
UAAA	chr10:98718486-98718761(+)$1	275	51	55	12.0000
UAAA	chr14:24908929-24909190(-)$1	261	197	201	12.0000
UAAA	chr12:103232304-103232561(-)$1	257	22	26	12.0000
UAAA	chr17:73571113-73571365(+)$1	252	120	124	12.0000
UAAA	chr11:77589683-77589936(-)$1	253	87	91	12.0000
UAAA	chr8:25272813-25273055(+)$1	242	36	40	12.0000
uaaa	chr3:8661032-8661324(-)$1	292	26	30	12.0000
UAAA	chr22:20099799-20100076(-)$1	277	234	238	12.0000
UAAA	chr1:15995213-15995497(+)$1	284	213	217	12.0000
UAAA	chr2:174232836-174233097(+)$1	261	53	57	12.0000
UAAA	chr3:145910096-145910407(-)$1	311	10	14	12.0000
UAAA	chr16:80295904-80296171(-)$1	267	181	185	12.0000
UAAA	chrX:53199654-53199931(+)$1	277	124	128	12.0000
UAAA	chr15:34817807-34818074(-)$1	267	31	35	12.0000
UAAA	chr20:60757261-60757543(+)$1	282	100	104	12.0000
UAAA	chr3:172118283-172118559(+)$1	276	49	53	12.0000
uaaa	chr10:22032238-22032515(+)$1	277	89	93	12.0000
UAAA	chr8:125563327-125563581(-)$1	254	40	44	12.0000
UAAA	chr11:65195531-65195792(+)$1	261	162	166	12.0000
UAAA	chrX:48683204-48683466(+)$1	262	160	164	12.0000
UAAA	chr2:58386413-58386673(-)$1	260	63	67	12.0000
UAAA	chr3:140698365-140698617(+)$1	252	26	30	12.0000
uaaa	chr2:238674260-238674590(+)$1	330	75	79	12.0000
UAAA	chr1:70717430-70717728(+)$1	298	39	43	12.0000
UAAA	chr14:24029363-24029601(-)$1	238	143	147	12.0000
UAAA	chr2:20192576-20192838(-)$1	262	104	108	12.0000
UAAA	chr14:25442412-25442664(-)$1	252	96	100	12.0000
UAAA	chr5:145890812-145891098(+)$1	286	67	71	12.0000
UAAA	chr3:52842059-52842294(+)$1	235	91	95	12.0000
UAAA	chr12:7032616-7032893(+)$1	277	225	229	12.0000
UAAA	chr2:167051612-167051869(-)$1	257	18	22	12.0000
UAAA	chr16:30016750-30016999(+)$1	249	150	154	12.0000
uaaa	chr11:65195862-65196093(+)$1	231	181	185	12.0000
UAAA	chr20:33515597-33515847(+)$1	250	147	151	12.0000
UAAA	chr20:61468393-61468662(+)$1	269	12	16	12.0000
UAAA	chr1:156495362-156495623(-)$1	261	170	174	12.0000
UAAA	chr3:171898155-171898404(+)$1	249	102	106	12.0000
UAAA	chr9:125866854-125867148(+)$1	294	209	213	12.0000
UAAA	chr20:61472272-61472570(+)$1	298	16	20	12.0000
UAAA	chr17:25640403-25640649(+)$1	246	12	16	12.0000
UAAA	chr3:52842106-52842334(+)$1	228	44	48	12.0000
UAAA	chr16:69675225-69675476(+)$1	251	96	100	12.0000
UAAA	chr5:52782047-52782292(+)$1	245	105	109	12.0000
UAAA	chr2:238006860-238007141(+)$1	281	69	73	12.0000
UAAA	chr14:105213378-105213706(+)$1	328	11	15	12.0000
UAAA	chrX:18911210-18911451(-)$1	241	13	17	12.0000
UAAA	chr7:935851-936108(+)$1	257	91	95	12.0000
UAAA	chr4:129029728-129030032(+)$1	304	44	48	12.0000
UAAA	chr3:9519482-9519696(+)$1	214	26	30	12.0000
UAAA	chrY:15032205-15032466(+)$1	261	38	42	12.0000
UAAA	chrX:53199731-53200010(+)$1	279	47	51	12.0000
UAAA	chr19:1009560-1009808(-)$1	248	137	141	12.0000
UAAA	chr10:300353-300620(+)$1	267	1	5	12.0000
UAAA	chr18:673916-674211(-)$1	295	106	110	12.0000
UAAA	chr7:128411344-128411588(+)$1	244	10	14	12.0000
uaaa	chr13:107195699-107195982(-)$1	283	35	39	12.0000
UAAA	chr1:1321992-1322290(-)$1	298	176	180	12.0000
UAAA	chr6:158519834-158520084(+)$1	250	79	83	12.0000
UAAA	chr20:39988788-39989074(+)$1	286	120	124	12.0000
UAAA	chr16:24930640-24930899(-)$1	259	98	102	12.0000
UAAA	chr14:35498556-35498820(+)$1	264	71	75	12.0000

#otherMatches

#Struct PSSM
FFKK	chr17:41009940-41010181(+)$1	241	13	17	12.0000
iiii	chr16:69675142-69675411(+)$1	269	179	183	12.0000
cc33	chr20:45837960-45838209(-)$1	249	183	187	12.0000
:EEE	chr2:113421171-113421420(+)$1	249	7	11	12.0000
::::	chr2:242434340-242434642(-)$1	302	190	194	12.0000
e]gg	chr2:70438798-70439029(-)$1	231	67	71	12.0000
9999	chr20:62374595-62374865(+)$1	270	239	243	12.0000
evvv	chr16:31202266-31202521(+)$1	255	174	178	12.0000
eeee	chr5:6599259-6599509(-)$1	250	1	5	12.0000
ooff	chrX:151121843-151122139(-)$1	296	25	29	12.0000
:::b	chr2:198256688-198256986(-)$1	298	4	8	12.0000
::::	chr9:139296669-139296966(-)$1	297	121	125	12.0000
::::	chr16:2652758-2653015(+)$1	257	26	30	12.0000
oooo	chr17:79876192-79876487(-)$1	295	70	74	12.0000
::::	chr2:99216765-99217119(-)$1	354	70	74	12.0000
::::	chr10:98718486-98718761(+)$1	275	51	55	12.0000
gqqq	chr14:24908929-24909190(-)$1	261	197	201	12.0000
::::	chr12:103232304-103232561(-)$1	257	22	26	12.0000
pppp	chr17:73571113-73571365(+)$1	252	120	124	12.0000
^^^^	chr11:77589683-77589936(-)$1	253	87	91	12.0000
cmmm	chr8:25272813-25273055(+)$1	242	36	40	12.0000
$$$$	chr3:8661032-8661324(-)$1	292	26	30	12.0000
::::	chr22:20099799-20100076(-)$1	277	234	238	12.0000
gggg	chr1:15995213-15995497(+)$1	284	213	217	12.0000
e:::	chr2:174232836-174233097(+)$1	261	53	57	12.0000
iiii	chr3:145910096-145910407(-)$1	311	10	14	12.0000
::::	chr16:80295904-80296171(-)$1	267	181	185	12.0000
g:::	chrX:53199654-53199931(+)$1	277	124	128	12.0000
qqqq	chr15:34817807-34818074(-)$1	267	31	35	12.0000
cccc	chr20:60757261-60757543(+)$1	282	100	104	12.0000
[ddd	chr3:172118283-172118559(+)$1	276	49	53	12.0000
44gg	chr10:22032238-22032515(+)$1	277	89	93	12.0000
FFFF	chr8:125563327-125563581(-)$1	254	40	44	12.0000
qqqq	chr11:65195531-65195792(+)$1	261	162	166	12.0000
e::c	chrX:48683204-48683466(+)$1	262	160	164	12.0000
ffff	chr2:58386413-58386673(-)$1	260	63	67	12.0000
$$$g	chr3:140698365-140698617(+)$1	252	26	30	12.0000
e$$$	chr2:238674260-238674590(+)$1	330	75	79	12.0000
GGGG	chr1:70717430-70717728(+)$1	298	39	43	12.0000
mmme	chr14:24029363-24029601(-)$1	238	143	147	12.0000
cc""	chr2:20192576-20192838(-)$1	262	104	108	12.0000
ssss	chr14:25442412-25442664(-)$1	252	96	100	12.0000
oooo	chr5:145890812-145891098(+)$1	286	67	71	12.0000
qqqq	chr3:52842059-52842294(+)$1	235	91	95	12.0000
ssss	chr12:7032616-7032893(+)$1	277	225	229	12.0000
d333	chr2:167051612-167051869(-)$1	257	18	22	12.0000
e:::	chr16:30016750-30016999(+)$1	249	150	154	12.0000
h"""	chr11:65195862-65196093(+)$1	231	181	185	12.0000
JJJJ	chr20:33515597-33515847(+)$1	250	147	151	12.0000
C:cc	chr20:61468393-61468662(+)$1	269	12	16	12.0000
YYEE	chr1:156495362-156495623(-)$1	261	170	174	12.0000
::::	chr3:171898155-171898404(+)$1	249	102	106	12.0000
[===	chr9:125866854-125867148(+)$1	294	209	213	12.0000
:::B	chr20:61472272-61472570(+)$1	298	16	20	12.0000
:eee	chr17:25640403-25640649(+)$1	246	12	16	12.0000
qqqq	chr3:52842106-52842334(+)$1	228	44	48	12.0000
iiii	chr16:69675225-69675476(+)$1	251	96	100	12.0000
b]hh	chr5:52782047-52782292(+)$1	245	105	109	12.0000
cnnn	chr2:238006860-238007141(+)$1	281	69	73	12.0000
cnnn	chr14:105213378-105213706(+)$1	328	11	15	12.0000
EE{C	chrX:18911210-18911451(-)$1	241	13	17	12.0000
c333	chr7:935851-936108(+)$1	257	91	95	12.0000
OOOO	chr4:129029728-129030032(+)$1	304	44	48	12.0000
::::	chr3:9519482-9519696(+)$1	214	26	30	12.0000
rrrr	chrY:15032205-15032466(+)$1	261	38	42	12.0000
ffff	chrX:53199731-53200010(+)$1	279	47	51	12.0000
g:::	chr19:1009560-1009808(-)$1	248	137	141	12.0000
ccmm	chr10:300353-300620(+)$1	267	1	5	12.0000
::HH	chr18:673916-674211(-)$1	295	106	110	12.0000
iiii	chr7:128411344-128411588(+)$1	244	10	14	12.0000
====	chr13:107195699-107195982(-)$1	283	35	39	12.0000
booo	chr1:1321992-1322290(-)$1	298	176	180	12.0000
eee!	chr6:158519834-158520084(+)$1	250	79	83	12.0000
:::d	chr20:39988788-39989074(+)$1	286	120	124	12.0000
gggg	chr16:24930640-24930899(-)$1	259	98	102	12.0000
ccff	chr14:35498556-35498820(+)$1	264	71	75	12.0000

#DB
((..	chr17:41009940-41010181(+)$1	1	13	17	12.0000
((((	chr16:69675142-69675411(+)$1	1	179	183	12.0000
))..	chr20:45837960-45838209(-)$1	1	183	187	12.0000
.(((	chr2:113421171-113421420(+)$1	1	7	11	12.0000
....	chr2:242434340-242434642(-)$1	1	190	194	12.0000
).))	chr2:70438798-70439029(-)$1	1	67	71	12.0000
....	chr20:62374595-62374865(+)$1	1	239	243	12.0000
(...	chr16:31202266-31202521(+)$1	1	174	178	12.0000
((((	chr5:6599259-6599509(-)$1	1	1	5	12.0000
..))	chrX:151121843-151122139(-)$1	1	25	29	12.0000
...(	chr2:198256688-198256986(-)$1	1	4	8	12.0000
....	chr9:139296669-139296966(-)$1	1	121	125	12.0000
....	chr16:2652758-2653015(+)$1	1	26	30	12.0000
....	chr17:79876192-79876487(-)$1	1	70	74	12.0000
....	chr2:99216765-99217119(-)$1	1	70	74	12.0000
....	chr10:98718486-98718761(+)$1	1	51	55	12.0000
(...	chr14:24908929-24909190(-)$1	1	197	201	12.0000
....	chr12:103232304-103232561(-)$1	1	22	26	12.0000
....	chr17:73571113-73571365(+)$1	1	120	124	12.0000
....	chr11:77589683-77589936(-)$1	1	87	91	12.0000
(...	chr8:25272813-25273055(+)$1	1	36	40	12.0000
....	chr3:8661032-8661324(-)$1	1	26	30	12.0000
....	chr22:20099799-20100076(-)$1	1	234	238	12.0000
))))	chr1:15995213-15995497(+)$1	1	213	217	12.0000
)...	chr2:174232836-174233097(+)$1	1	53	57	12.0000
((((	chr3:145910096-145910407(-)$1	1	10	14	12.0000
....	chr16:80295904-80296171(-)$1	1	181	185	12.0000
)...	chrX:53199654-53199931(+)$1	1	124	128	12.0000
....	chr15:34817807-34818074(-)$1	1	31	35	12.0000
((((	chr20:60757261-60757543(+)$1	1	100	104	12.0000
.(((	chr3:172118283-172118559(+)$1	1	49	53	12.0000
..))	chr10:22032238-22032515(+)$1	1	89	93	12.0000
((((	chr8:125563327-125563581(-)$1	1	40	44	12.0000
....	chr11:65195531-65195792(+)$1	1	162	166	12.0000
)..(	chrX:48683204-48683466(+)$1	1	160	164	12.0000
((((	chr2:58386413-58386673(-)$1	1	63	67	12.0000
...(	chr3:140698365-140698617(+)$1	1	26	30	12.0000
(...	chr2:238674260-238674590(+)$1	1	75	79	12.0000
((((	chr1:70717430-70717728(+)$1	1	39	43	12.0000
...)	chr14:24029363-24029601(-)$1	1	143	147	12.0000
((..	chr2:20192576-20192838(-)$1	1	104	108	12.0000
....	chr14:25442412-25442664(-)$1	1	96	100	12.0000
....	chr5:145890812-145891098(+)$1	1	67	71	12.0000
....	chr3:52842059-52842294(+)$1	1	91	95	12.0000
....	chr12:7032616-7032893(+)$1	1	225	229	12.0000
)...	chr2:167051612-167051869(-)$1	1	18	22	12.0000
)...	chr16:30016750-30016999(+)$1	1	150	154	12.0000
(...	chr11:65195862-65196093(+)$1	1	181	185	12.0000
))))	chr20:33515597-33515847(+)$1	1	147	151	12.0000
(.((	chr20:61468393-61468662(+)$1	1	12	16	12.0000
..))	chr1:156495362-156495623(-)$1	1	170	174	12.0000
....	chr3:171898155-171898404(+)$1	1	102	106	12.0000
.(((	chr9:125866854-125867148(+)$1	1	209	213	12.0000
...(	chr20:61472272-61472570(+)$1	1	16	20	12.0000
.(((	chr17:25640403-25640649(+)$1	1	12	16	12.0000
....	chr3:52842106-52842334(+)$1	1	44	48	12.0000
((((	chr16:69675225-69675476(+)$1	1	96	100	12.0000
).))	chr5:52782047-52782292(+)$1	1	105	109	12.0000
(...	chr2:238006860-238007141(+)$1	1	69	73	12.0000
(...	chr14:105213378-105213706(+)$1	1	11	15	12.0000
((.(	chrX:18911210-18911451(-)$1	1	13	17	12.0000
)...	chr7:935851-936108(+)$1	1	91	95	12.0000
....	chr4:129029728-129030032(+)$1	1	44	48	12.0000
....	chr3:9519482-9519696(+)$1	1	26	30	12.0000
....	chrY:15032205-15032466(+)$1	1	38	42	12.0000
((((	chrX:53199731-53200010(+)$1	1	47	51	12.0000
)...	chr19:1009560-1009808(-)$1	1	137	141	12.0000
((..	chr10:300353-300620(+)$1	1	1	5	12.0000
..((	chr18:673916-674211(-)$1	1	106	110	12.0000
((((	chr7:128411344-128411588(+)$1	1	10	14	12.0000
))))	chr13:107195699-107195982(-)$1	1	35	39	12.0000
(...	chr1:1321992-1322290(-)$1	1	176	180	12.0000
(((.	chr6:158519834-158520084(+)$1	1	79	83	12.0000
...(	chr20:39988788-39989074(+)$1	1	120	124	12.0000
((((	chr16:24930640-24930899(-)$1	1	98	102	12.0000
((((	chr14:35498556-35498820(+)$1	1	71	75	12.0000

#PSSM
U : 0.90	u : 0.09	
A : 0.90	a : 0.09	
A : 0.90	a : 0.09	
A : 0.90	a : 0.09	

#score	912.0000000000002
#seq	76
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_UTR_m1_run2.nuc.txt

#NT
GGGUggg	chr11:95522594-95522852(-)$1	258	4	11	21.0000
GGGUGGG	chr19:46893632-46893914(+)$1	282	242	249	21.0000
GGGUGGG	chr10:105361295-105361568(-)$1	273	87	94	21.0000
GGGUGGG	chr6:31626682-31626979(-)$1	297	145	152	21.0000
GGGUGGG	chr3:15296741-15297005(-)$1	264	44	51	21.0000
GGGUGGG	chr11:62481407-62481656(-)$1	249	44	51	21.0000
GGGUGGG	chr22:41755824-41756102(+)$1	278	87	94	21.0000
GGGUGGG	chr2:89049573-89049873(+)$1	300	136	143	21.0000
GGGUGGG	chr19:52074520-52074829(+)$1	309	157	164	21.0000
GGGUGGG	chr1:19665426-19665669(-)$1	243	193	200	21.0000
GGGUGGG	chr15:89441851-89442115(-)$1	264	56	63	21.0000
GGGUGGG	chr5:177022878-177023140(+)$1	262	18	25	21.0000
GGGUGGG	chr2:74784185-74784563(+)$1	378	146	153	21.0000
GGGUGGG	chr1:156109568-156109863(+)$1	295	73	80	21.0000
GGGUGGG	chr14:23795228-23795444(+)$1	216	87	94	21.0000
GGGUGGG	chr19:42752203-42752456(-)$1	253	11	18	21.0000
GGGUGGG	chr19:50363438-50363689(+)$1	251	205	212	21.0000
GGGUGGG	chr6:44122996-44123283(+)$1	287	145	152	21.0000
GGGUGGG	chr2:102508224-102508519(+)$1	295	88	95	21.0000
ggguggg	chr1:203047674-203047944(+)$1	270	130	137	21.0000
GGGUGGG	chr12:56632327-56632615(-)$1	288	84	91	21.0000
GGGUGGG	chr3:45730800-45731091(+)$1	291	39	46	21.0000
GGGUGGG	chr20:49201074-49201365(+)$1	291	87	94	21.0000
ggguggg	chr4:2935978-2936283(-)$1	305	25	32	21.0000
ggguggg	chr19:7978277-7978565(+)$1	288	118	125	21.0000
GGGUGGG	chr19:1009890-1010202(-)$1	312	85	92	21.0000
GGGUGGG	chr17:37076031-37076323(+)$1	292	155	162	21.0000
GGGUGGG	chr15:69072228-69072484(-)$1	256	237	244	21.0000
ggguggg	chr8:30669801-30670092(-)$1	291	90	97	21.0000
GGGUGGG	chr6:33172041-33172273(+)$1	232	44	51	21.0000
GGGUGGG	chr10:73576257-73576541(-)$1	284	22	29	21.0000
GGGUGGG	chr9:140167572-140167852(+)$1	280	120	127	21.0000
GGGUGGG	chr11:62392279-62392530(-)$1	251	54	61	21.0000
GGGUGGG	chr17:48211090-48211360(-)$1	270	98	105	21.0000
GGGUGGG	chr17:20905980-20906227(-)$1	247	118	125	21.0000
GGGUGGG	chr2:220403039-220403312(+)$1	273	69	76	21.0000
GGGUGGG	chr19:9960052-9960317(+)$1	265	65	72	21.0000
GGGUGGG	chr11:75283158-75283452(+)$1	294	78	85	21.0000
GGGUGGG	chr2:68405974-68406218(-)$1	244	104	111	21.0000
GGGUGGG	chr1:110950155-110950401(-)$1	246	152	159	21.0000
GGGUGGG	chr9:133761398-133761663(+)$1	265	249	256	21.0000
GGGUGGG	chr17:38248550-38248839(+)$1	289	140	147	21.0000

#otherMatches

#Struct PSSM
fffff==	chr5:177022655-177022883(+)$1	228	71	78	21.0000
GGGGG{C	chr11:95522594-95522852(-)$1	258	4	11	21.0000
ddd[===	chr19:46893632-46893914(+)$1	282	242	249	21.0000
>ffffff	chr10:105361295-105361568(-)$1	273	87	94	21.0000
FFF{FFF	chr6:31626682-31626979(-)$1	297	145	152	21.0000
OOOOOCC	chr3:15296741-15297005(-)$1	264	44	51	21.0000
IIIIbb!	chr11:62481407-62481656(-)$1	249	44	51	21.0000
!a[a[cc	chr22:41755824-41756102(+)$1	278	87	94	21.0000
ghhhhhh	chr2:89049573-89049873(+)$1	300	136	143	21.0000
"ccc[cc	chr19:52074520-52074829(+)$1	309	157	164	21.0000
=======	chr1:19665426-19665669(-)$1	243	193	200	21.0000
=======	chr15:89441851-89442115(-)$1	264	56	63	21.0000
KA{DDDD	chr5:177022878-177023140(+)$1	262	18	25	21.0000
ta]ccc4	chr2:74784185-74784563(+)$1	378	146	153	21.0000
f####dd	chr1:156109568-156109863(+)$1	295	73	80	21.0000
mmmgggg	chr14:23795228-23795444(+)$1	216	87	94	21.0000
FLLLCCC	chr19:42752203-42752456(-)$1	253	11	18	21.0000
JJJJJJJ	chr19:50363438-50363689(+)$1	251	205	212	21.0000
:::::GG	chr6:44122996-44123283(+)$1	287	145	152	21.0000
eeeebb[	chr2:102508224-102508519(+)$1	295	88	95	21.0000
GGG}DDD	chr1:203047674-203047944(+)$1	270	130	137	21.0000
c======	chr12:56632327-56632615(-)$1	288	84	91	21.0000
eeee]bb	chr3:45730800-45731091(+)$1	291	39	46	21.0000
:gggggg	chr20:49201074-49201365(+)$1	291	87	94	21.0000
+++++++	chr4:2935978-2936283(-)$1	305	25	32	21.0000
:::::::	chr19:7978277-7978565(+)$1	288	118	125	21.0000
JJJJJJJ	chr19:1009890-1010202(-)$1	312	85	92	21.0000
ggggddd	chr17:37076031-37076323(+)$1	292	155	162	21.0000
ccc]eee	chr15:69072228-69072484(-)$1	256	237	244	21.0000
eeee555	chr8:30669801-30670092(-)$1	291	90	97	21.0000
dddd[a!	chr6:33172041-33172273(+)$1	232	44	51	21.0000
CCC{CCC	chr10:73576257-73576541(-)$1	284	22	29	21.0000
~~~GGGG	chr9:140167572-140167852(+)$1	280	120	127	21.0000
2ffffff	chr11:62392279-62392530(-)$1	251	54	61	21.0000
ggggggg	chr17:48211090-48211360(-)$1	270	98	105	21.0000
ctttttt	chr17:20905980-20906227(-)$1	247	118	125	21.0000
DDDDKKH	chr2:220403039-220403312(+)$1	273	69	76	21.0000
cc[eeee	chr19:9960052-9960317(+)$1	265	65	72	21.0000
cc]cccb	chr11:75283158-75283452(+)$1	294	78	85	21.0000
hh!!ddd	chr2:68405974-68406218(-)$1	244	104	111	21.0000
e]bbIII	chr1:110950155-110950401(-)$1	246	152	159	21.0000
=======	chr9:133761398-133761663(+)$1	265	249	256	21.0000
ddd]fff	chr17:38248550-38248839(+)$1	289	140	147	21.0000

#DB
)))))))	chr5:177022655-177022883(+)$1	1	71	78	21.0000
(((((.(	chr11:95522594-95522852(-)$1	1	4	11	21.0000
(((.(((	chr19:46893632-46893914(+)$1	1	242	249	21.0000
.))))))	chr10:105361295-105361568(-)$1	1	87	94	21.0000
(((.(((	chr6:31626682-31626979(-)$1	1	145	152	21.0000
.....((	chr3:15296741-15297005(-)$1	1	44	51	21.0000
((((((.	chr11:62481407-62481656(-)$1	1	44	51	21.0000
.(.(.((	chr22:41755824-41756102(+)$1	1	87	94	21.0000
)))))))	chr2:89049573-89049873(+)$1	1	136	143	21.0000
.(((.((	chr19:52074520-52074829(+)$1	1	157	164	21.0000
)))))))	chr1:19665426-19665669(-)$1	1	193	200	21.0000
)))))))	chr15:89441851-89442115(-)$1	1	56	63	21.0000
.(.((((	chr5:177022878-177023140(+)$1	1	18	25	21.0000
.).))).	chr2:74784185-74784563(+)$1	1	146	153	21.0000
(....((	chr1:156109568-156109863(+)$1	1	73	80	21.0000
...))))	chr14:23795228-23795444(+)$1	1	87	94	21.0000
(...(((	chr19:42752203-42752456(-)$1	1	11	18	21.0000
)))))))	chr19:50363438-50363689(+)$1	1	205	212	21.0000
.....((	chr6:44122996-44123283(+)$1	1	145	152	21.0000
((((((.	chr2:102508224-102508519(+)$1	1	88	95	21.0000
))).)))	chr1:203047674-203047944(+)$1	1	130	137	21.0000
)((((((	chr12:56632327-56632615(-)$1	1	84	91	21.0000
)))).))	chr3:45730800-45731091(+)$1	1	39	46	21.0000
.((((((	chr20:49201074-49201365(+)$1	1	87	94	21.0000
.......	chr4:2935978-2936283(-)$1	1	25	32	21.0000
.......	chr19:7978277-7978565(+)$1	1	118	125	21.0000
(((((((	chr19:1009890-1010202(-)$1	1	85	92	21.0000
(((((((	chr17:37076031-37076323(+)$1	1	155	162	21.0000
))).)))	chr15:69072228-69072484(-)$1	1	237	244	21.0000
))))...	chr8:30669801-30670092(-)$1	1	90	97	21.0000
((((.(.	chr6:33172041-33172273(+)$1	1	44	51	21.0000
(((.(((	chr10:73576257-73576541(-)$1	1	22	29	21.0000
...))))	chr9:140167572-140167852(+)$1	1	120	127	21.0000
.))))))	chr11:62392279-62392530(-)$1	1	54	61	21.0000
)))))))	chr17:48211090-48211360(-)$1	1	98	105	21.0000
(......	chr17:20905980-20906227(-)$1	1	118	125	21.0000
((((..(	chr2:220403039-220403312(+)$1	1	69	76	21.0000
((.((((	chr19:9960052-9960317(+)$1	1	65	72	21.0000
)).)))(	chr11:75283158-75283452(+)$1	1	78	85	21.0000
((..(((	chr2:68405974-68406218(-)$1	1	104	111	21.0000
).)))))	chr1:110950155-110950401(-)$1	1	152	159	21.0000
)))))))	chr9:133761398-133761663(+)$1	1	249	256	21.0000
))).)))	chr17:38248550-38248839(+)$1	1	140	147	21.0000

#PSSM
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	
U : 0.90	u : 0.09	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	

#score	903.0000000000001
#seq	43
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_CDS_m3_run1.nuc.txt

#NT
AGGAGGAGGAGGAAGAGCA	chr19:11118476-11118758(+)$1	282	99	118	36.0476
aggaggaggaggaggagaa	chr19:6381269-6381568(-)$1	299	142	161	34.3809
augaggcagaggaagagaa	chr6:44217945-44218172(+)$1	227	116	135	28.4285
aacaggaggaggaagaaca	chr14:39649733-39650024(+)$1	291	234	253	26.6428
augacgaggacgaugagga	chr21:27394086-27394385(-)$1	299	95	114	24.8571
AGGAAGAGGAUCAAGAAAC	chr14:23549748-23550006(-)$1	258	31	50	21.0476
aggugaugguggaagagaa	chr7:134617935-134618251(+)$1	316	210	229	22.3571
AGGAGGAUGAUGAAGGUGA	chrX:53588731-53588986(-)$1	255	99	118	22.9523
aggaggaugaggaggauga	chr2:232326205-232326434(-)$1	229	31	50	28.3095
AGGAAGAGGAGGCUGCAAA	chr2:233697460-233697741(+)$1	281	104	123	20.0952
AGGAGAAGGAGGUCGAAGA	chr6:114264414-114264724(-)$1	310	112	131	23.7857
AGGAGGAGAAGAAAGGGGU	chr11:47767637-47768012(-)$1	375	103	122	21.6428
AGGAAGAAGGGGAAGAGAU	chr14:23549569-23549841(-)$1	272	37	56	24.5000
AGGAAGUGGAUGAAGAGAA	chr7:72873761-72874040(-)$1	279	134	153	28.4285
aggaggcagagaaugagga	chr2:27606715-27606946(-)$1	231	21	40	25.9285
aagaggaaguggaagagaa	chr19:15366774-15367122(-)$1	348	157	176	27.8333
aggaggaggaggaagagga	chr4:69202737-69203020(-)$1	283	81	100	37.3571
agaaagagaagaaagagaa	chr17:48823068-48823421(+)$1	353	74	93	23.7857
aagaaggggaagaagauca	chr1:16891204-16891509(-)$1	305	124	143	21.1666
AGGAAGGGGAAGAUGAGCU	chr1:245027133-245027439(-)$1	306	245	264	20.9285
AGCAGAAGGUGGAAGAGGA	chr6:7581042-7581294(+)$1	252	89	108	26.7619
augaggcagaggaagagaa	chr6:44217972-44218199(+)$1	227	89	108	28.4285
uccuggaggaggaagagca	chr7:134632261-134632621(+)$1	360	197	216	20.5714
aacaggaggaggaagaaca	chr14:39649824-39650094(+)$1	270	143	162	26.6428
AGAAGGAGGAGCUUGAGGA	chr14:73575974-73576301(+)$1	327	149	168	23.4285
aagaagaggaggaagagga	chr2:99992803-99993104(+)$1	301	96	115	32.8333
AGGAAAUGGAGAAAGAGUC	chr6:35838024-35838371(-)$1	347	191	210	19.8571
AGGAGGCAGAGGAGGAGGA	chr2:232319833-232320057(-)$1	224	95	114	29.5000
AGAAAGUGGAUGAAGAGGC	chr7:72912796-72913093(-)$1	297	117	136	21.6428
AGGAGGAGGUGGGCGAAGA	chr22:36744970-36745219(-)$1	249	77	96	23.0714
AGGAAAAAAAGCAAGAGCA	chr20:34319938-34320160(-)$1	222	104	123	20.8095
aggaggaggaggaggagga	chr12:6711039-6711352(-)$1	313	186	205	34.9761
AGGAGGAGCAGCACCAGAA	chr1:46072982-46073280(+)$1	298	242	261	21.4047
augaggaagaagaaaagaa	chr14:102551125-102551383(-)$1	258	175	194	23.1904
AGGAGUGCGAGGAGGAGGA	chr7:105148540-105148846(-)$1	306	158	177	24.6190
aagaggaggaggaagagga	chr17:4575285-4575630(-)$1	345	7	26	34.7380
UGAAGAAGGAGAAAGAGAA	chr11:65826670-65826910(+)$1	240	14	33	22.3571
augaugaugaugaagagga	chr9:131456087-131456310(+)$1	223	130	149	24.8571
AAGUAGAGGAGGAAGAGCG	chr15:93527469-93527831(+)$1	362	184	203	23.1904
UGGAGACGGAGGAGGAGGA	chr5:145850129-145850424(+)$1	295	129	148	24.5000
AGGAGGACGGGGAGGAGAA	chr19:10791838-10792111(+)$1	273	110	129	27.1190

#otherMatches

#Struct PSSM
3dddddddd]dddd]ccc8	chr6:31857143-31857456(-)$1	313	114	133	37.3571
ccc!!a[eeeee!!a[bb[	chr19:11118476-11118758(+)$1	282	99	118	36.0476
CCC{HHHHHHHH{BBBB::	chr19:6381269-6381568(-)$1	299	142	161	34.3809
22cccffffff]a666666	chr6:44217945-44218172(+)$1	227	116	135	28.4285
:::::::::::::::::::	chr14:39649733-39650024(+)$1	291	234	253	26.6428
tttttttbb:::::::bb[	chr21:27394086-27394385(-)$1	299	95	114	24.8571
qqqqbbcccDDDDNNNNNH	chr14:23549748-23550006(-)$1	258	31	50	21.0476
~~~AYYFFFFFF:::::::	chr7:134617935-134618251(+)$1	316	210	229	22.3571
^ggggggg22bb]ffffff	chrX:53588731-53588986(-)$1	255	99	118	22.9523
F::::::::CCC{BB::::	chr2:232326205-232326434(-)$1	229	31	50	28.3095
ggg22eeeeeddddqqqqq	chr2:233697460-233697741(+)$1	281	104	123	20.0952
:::::::bb[eeeeeqqqq	chr6:114264414-114264724(-)$1	310	112	131	23.7857
ddccc:::::::hhhhhhh	chr11:47767637-47768012(-)$1	375	103	122	21.6428
::::::::cccrrrrrrrr	chr14:23549569-23549841(-)$1	272	37	56	24.5000
ee4444dddd:::::::::	chr7:72873761-72874040(-)$1	279	134	153	28.4285
$bb"""bb####bbppppp	chr2:27606715-27606946(-)$1	231	21	40	25.9285
!!dddd"""ccc^^^^^^^	chr19:15366774-15367122(-)$1	348	157	176	27.8333
:::::::::::::::::::	chr4:69202737-69203020(-)$1	283	81	100	37.3571
:::::::::::::::::::	chr17:48823068-48823421(+)$1	353	74	93	23.7857
:::::AKKEEEEEGGGGGG	chr1:16891204-16891509(-)$1	305	124	143	21.1666
::::BB}DDDD?????GGG	chr1:245027133-245027439(-)$1	306	245	264	20.9285
NNCCCKKEEEEEKKBBBB{	chr6:7581042-7581294(+)$1	252	89	108	26.7619
22cccffffff]a666666	chr6:44217972-44218199(+)$1	227	89	108	28.4285
ddddnnnnndddd::::::	chr7:134632261-134632621(+)$1	360	197	216	20.5714
fffff22a:::::::ccc$	chr14:39649824-39650094(+)$1	270	143	162	26.6428
FFFFFZZZDDDD}CCC}AZ	chr14:73575974-73576301(+)$1	327	149	168	23.4285
:::::::::::::::::::	chr2:99992803-99993104(+)$1	301	96	115	32.8333
[bb(((((((((ccc[ccc	chr6:35838024-35838371(-)$1	347	191	210	19.8571
CC==========[bb[fff	chr2:232319833-232320057(-)$1	224	95	114	29.5000
EEE}GGGGGGGYYGGGGGG	chr7:72912796-72913093(-)$1	297	117	136	21.6428
LLDDDDKKCCCDDDDKKEE	chr22:36744970-36745219(-)$1	249	77	96	23.0714
==========bbmmmmbb:	chr20:34319938-34320160(-)$1	222	104	123	20.8095
a[===========eeeeec	chr12:6711039-6711352(-)$1	313	186	205	34.9761
ueeeee22ccc::gggggg	chr1:46072982-46073280(+)$1	298	242	261	21.4047
gg::::::::::::::bb!	chr14:102551125-102551383(-)$1	258	175	194	23.1904
:bb[dddd$$$$$a!!bb!	chr7:105148540-105148846(-)$1	306	158	177	24.6190
:::::::::::::::::::	chr17:4575285-4575630(-)$1	345	7	26	34.7380
ddd::::::::::::::::	chr11:65826670-65826910(+)$1	240	14	33	22.3571
bbmmmmbb]bb::::::::	chr9:131456087-131456310(+)$1	223	130	149	24.8571
::eeeee''''''''ccc!	chr15:93527469-93527831(+)$1	362	184	203	23.1904
ooooa]ffffff]eeeee:	chr5:145850129-145850424(+)$1	295	129	148	24.5000
fffffccc]ccc:EEEEE}	chr19:10791838-10792111(+)$1	273	110	129	27.1190

#DB
.)))))))).)))).))).	chr6:31857143-31857456(-)$1	1	114	133	37.3571
(((..(.(((((..(.((.	chr19:11118476-11118758(+)$1	1	99	118	36.0476
(((.((((((((.((((..	chr19:6381269-6381568(-)$1	1	142	161	34.3809
..))))))))).)......	chr6:44217945-44218172(+)$1	1	116	135	28.4285
...................	chr14:39649733-39650024(+)$1	1	234	253	26.6428
.......)).......((.	chr21:27394086-27394385(-)$1	1	95	114	24.8571
....)))))((((.....(	chr14:23549748-23550006(-)$1	1	31	50	21.0476
...)..)))))).......	chr7:134617935-134618251(+)$1	1	210	229	22.3571
.)))))))..)).))))))	chrX:53588731-53588986(-)$1	1	99	118	22.9523
(........(((.((....	chr2:232326205-232326434(-)$1	1	31	50	28.3095
)))..)))))((((.....	chr2:233697460-233697741(+)$1	1	104	123	20.0952
.......((.(((((....	chr6:114264414-114264724(-)$1	1	112	131	23.7857
))))).......(((((((	chr11:47767637-47768012(-)$1	1	103	122	21.6428
........(((........	chr14:23549569-23549841(-)$1	1	37	56	24.5000
))....)))).........	chr7:72873761-72874040(-)$1	1	134	153	28.4285
.((...((....((.....	chr2:27606715-27606946(-)$1	1	21	40	25.9285
..((((...(((.......	chr19:15366774-15367122(-)$1	1	157	176	27.8333
...................	chr4:69202737-69203020(-)$1	1	81	100	37.3571
...................	chr17:48823068-48823421(+)$1	1	74	93	23.7857
.....(..(((((((((((	chr1:16891204-16891509(-)$1	1	124	143	21.1666
....)).)))).....)))	chr1:245027133-245027439(-)$1	1	245	264	20.9285
..(((..(((((..((((.	chr6:7581042-7581294(+)$1	1	89	108	26.7619
..))))))))).)......	chr6:44217972-44218199(+)$1	1	89	108	28.4285
((((.....))))......	chr7:134632261-134632621(+)$1	1	197	216	20.5714
)))))..).......(((.	chr14:39649824-39650094(+)$1	1	143	162	26.6428
)))))...)))).))).).	chr14:73575974-73576301(+)$1	1	149	168	23.4285
...................	chr2:99992803-99993104(+)$1	1	96	115	32.8333
.((.........(((.(((	chr6:35838024-35838371(-)$1	1	191	210	19.8571
((((((((((((.((.(((	chr2:232319833-232320057(-)$1	1	95	114	29.5000
))).)))))))..))))))	chr7:72912796-72913093(-)$1	1	117	136	21.6428
..((((..(((((((..((	chr22:36744970-36745219(-)$1	1	77	96	23.0714
))))))))))((....)).	chr20:34319938-34320160(-)$1	1	104	123	20.8095
(.(((((((((((((((((	chr12:6711039-6711352(-)$1	1	186	205	34.9761
.)))))..)))..((((((	chr1:46072982-46073280(+)$1	1	242	261	21.4047
))..............((.	chr14:102551125-102551383(-)$1	1	175	194	23.1904
.((.((((.....(..((.	chr7:105148540-105148846(-)$1	1	158	177	24.6190
...................	chr17:4575285-4575630(-)$1	1	7	26	34.7380
)))................	chr11:65826670-65826910(+)$1	1	14	33	22.3571
((....)).))........	chr9:131456087-131456310(+)$1	1	130	149	24.8571
..(((((........(((.	chr15:93527469-93527831(+)$1	1	184	203	23.1904
....).)))))).))))).	chr5:145850129-145850424(+)$1	1	129	148	24.5000
)))))))).))).))))).	chr19:10791838-10792111(+)$1	1	110	129	27.1190

#PSSM
A : 0.47	a : 0.45	U : 0.04	u : 0.02	
G : 0.50	g : 0.19	a : 0.14	u : 0.11	c : 0.02	A : 0.02	
G : 0.42	g : 0.38	c : 0.07	A : 0.07	a : 0.02	C : 0.02	
A : 0.50	a : 0.42	u : 0.04	U : 0.02	
g : 0.35	G : 0.30	A : 0.21	a : 0.07	c : 0.02	u : 0.02	
g : 0.45	G : 0.35	A : 0.14	a : 0.02	U : 0.02	
a : 0.35	A : 0.35	c : 0.07	U : 0.07	G : 0.04	C : 0.04	u : 0.02	g : 0.02	
G : 0.38	g : 0.30	a : 0.11	A : 0.07	u : 0.04	C : 0.04	U : 0.02	
g : 0.45	G : 0.45	A : 0.04	a : 0.02	C : 0.02	
a : 0.42	A : 0.42	u : 0.04	G : 0.04	U : 0.04	
G : 0.40	g : 0.38	U : 0.09	a : 0.04	c : 0.02	A : 0.02	u : 0.02	
g : 0.42	G : 0.35	C : 0.09	A : 0.07	a : 0.04	
a : 0.47	A : 0.42	U : 0.04	C : 0.02	G : 0.02	
a : 0.35	A : 0.28	G : 0.09	g : 0.07	U : 0.07	C : 0.07	u : 0.04	
G : 0.50	g : 0.45	C : 0.02	a : 0.02	
a : 0.47	A : 0.45	G : 0.04	C : 0.02	
G : 0.40	g : 0.38	A : 0.09	a : 0.04	u : 0.04	U : 0.02	
G : 0.23	g : 0.21	a : 0.16	A : 0.16	C : 0.09	c : 0.09	U : 0.02	
a : 0.47	A : 0.35	C : 0.07	U : 0.07	G : 0.02	

#score	1092.3333333333346
#seq	42
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_transcript_m3_run1.nuc.txt

#NT
ACAGUGCAUGGGCAUGUGUGCUCACUGUGUGCACAGGCGUCUGUAAACUGCAcgggcgugugugcugugugugugcaggcgagcguaaacagugcacggaugcgugugcucaccgugugcgcaggcgaguguaagugcacgggugugugugcugugcgcaggcgaguguaaacugcacgggcgcgugugcucaccgugugcgcaggcgaguguaaacagugcacgggugcgugugCUCACUGUGCGCAGGCGUCUGUAAACAGUGCACGGGCGUGUGUGUGCUCACUGCGCAGGCGAGUGUAAACUGCACGGGCGCGUGUGUGCUCACUGUGUGCGCAGGCGAGCG	chr11:484623-484976(+)$1	353	3	349	495.5000

#otherMatches

#Struct PSSM
bb[eeeee!!bb[dddd$$$$$hhhhhhhh[dddd[eeeee!!eeeeebb!!bb!!eeeee####eeeee[dddd[eeeee!!bbccc[ffffff[ccc[ccc$$$$$hhhhhhhhmmmmhhhhhhhhcccccc]ffffff]ccc]bb55555eeeee]dddd]eeeee4444eeeee22bb22bb4444eeeeeeeeee]dddd]hhhhhhhhddddbbeeeee]bb::::::::::hhhhhhhh[dddd[eeeeedddd[hhhhhhhh!!dddd&&&&&&&eeeeemmmmeeeeedddd]hhhhhhhh22dddd999999999eeeee]dddd]hhhhhhhh::	chr11:485437-485787(+)$1	350	0	346	495.5000
EEEEEEEEEE{DDDD{EEEEEKKEEEEE::eeeee[hhhhhhhh!!dddd[ccc!!ccc[eeeeepppppppeeeee]ccc22ccc333dddd22hhhhhhhh]eeeee:cccccc[ffffff[ccc[ccc!!hhhhhhhh[bb[ffffff"""eeeeeooooooeeeee333ffffff]bb]hhhhhhhhcccccc]ffffff]ccc]ccc:::EEEEEEEEEE}DDDD}EEEEEYYEEEEEeeeee[hhhhhhhhrrrrrrrrrhhhhhhhh]eeeeedddd[ggggggg[bb[dddd"""bb[eeeeemmmmeeeeebb333ddddbb]ggggggg22dddd:	chr11:484623-484976(+)$1	353	3	349	495.5000

#DB
((.(((((..((.((((.....((((((((.((((.(((((..(((((((..((..(((((....(((((.((((.(((((..(((((.((((((.(((.(((.....((((((((....)))))))))))))).)))))).))).)).....))))).)))).)))))....)))))..))..))....)))))))))).)))).))))))))))))))))))).))..........((((((((.((((.(((((((((.((((((((..((((.......(((((....))))))))).))))))))..)))).........))))).)))).))))))))..	chr11:485437-485787(+)$1	1	0	346	495.5000
((((((((((.((((.(((((..(((((..(((((.((((((((..((((.(((..(((.(((((.......))))).)))..)))...))))..)))))))).))))).((((((.((((((.(((.(((..((((((((.((.((((((...(((((......)))))...)))))).)).)))))))))))))).)))))).))).)))...)))))))))).)))).)))))..)))))(((((.((((((((.........)))))))).)))))((((.(((((((.((.((((...((.(((((....)))))))...)))))).)))))))..)))).	chr11:484623-484976(+)$1	1	3	349	495.5000

#PSSM
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
U : 0.50	g : 0.50	
A : 0.50	u : 0.50	
A : 0.50	g : 0.50	
A : 0.50	u : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	u : 0.50	
C : 0.50	g : 0.50	
A : 0.50	u : 0.50	
C : 0.50	g : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
C : 0.50	g : 0.50	
G : 0.50	u : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
U : 0.50	a : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	u : 0.50	
G : 0.50	a : 0.50	
U : 0.50	a : 0.50	
G : 0.50	a : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
G : 0.50	u : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	g : 0.50	
A : 0.50	u : 0.50	
A : 0.50	g : 0.50	
A : 0.50	u : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	u : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	c : 0.50	
A : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
U : 0.50	a : 0.50	
C : 0.50	g : 0.50	
A : 0.50	u : 0.50	
C : 0.50	g : 0.50	
C : 0.50	u : 0.50	
G : 0.50	a : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	u : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
A : 0.50	g : 0.50	
A : 0.50	u : 0.50	
A : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	u : 0.50	
A : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	u : 0.50	
U : 0.50	a : 0.50	
C : 0.50	a : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
A : 0.50	g : 0.50	
A : 0.50	c : 0.50	
A : 0.50	u : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
g : 0.50	c : 0.50	
u : 0.50	c : 0.50	
g : 1.00	
c : 0.50	u : 0.50	
a : 0.50	g : 0.50	
c : 0.50	u : 0.50	
g : 1.00	
g : 0.50	c : 0.50	
g : 1.00	
c : 1.00	
g : 0.50	a : 0.50	
c : 0.50	g : 0.50	
g : 1.00	
u : 0.50	c : 0.50	
g : 1.00	
u : 0.50	a : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
c : 0.50	u : 0.50	
u : 0.50	a : 0.50	
c : 0.50	a : 0.50	
a : 1.00	
c : 1.00	
u : 0.50	a : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
g : 0.50	a : 0.50	
c : 1.00	
a : 0.50	g : 0.50	
g : 1.00	
g : 1.00	
c : 0.50	u : 0.50	
g : 1.00	
a : 0.50	c : 0.50	
g : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
u : 1.00	
a : 0.50	g : 0.50	
a : 0.50	C : 0.50	
a : 0.50	U : 0.50	
c : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	
a : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	C : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	A : 0.50	
c : 0.50	A : 0.50	
u : 0.50	A : 0.50	
c : 0.50	C : 0.50	
a : 0.50	A : 0.50	
c : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
c : 0.50	C : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
a : 0.50	G : 0.50	
a : 0.50	U : 0.50	
a : 0.50	G : 0.50	
c : 0.50	C : 0.50	
u : 0.50	U : 0.50	
g : 0.50	C : 0.50	
c : 0.50	A : 0.50	
a : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	
u : 0.50	G : 0.50	
c : 0.50	U : 0.50	
a : 0.50	A : 0.50	
c : 0.50	A : 0.50	
u : 0.50	A : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
a : 0.50	G : 0.50	
a : 0.50	U : 0.50	
a : 0.50	G : 0.50	
c : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	C : 0.50	
u : 0.50	U : 0.50	
g : 0.50	C : 0.50	
c : 0.50	A : 0.50	
a : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	A : 0.50	
u : 0.50	G : 0.50	
c : 0.50	C : 0.50	
a : 0.50	G : 0.50	

#score	991.0
#seq	2
#width	346
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_UTR_m1_run2.nuc.txt

#NT
ACAA	chr12:53421858-53422072(+)$1	214	204	208	12.0000
ACAA	chr22:20939301-20939579(+)$1	278	220	224	12.0000
ACAA	chr2:172848120-172848378(+)$1	258	32	36	12.0000
ACAA	chr13:21714924-21715235(+)$1	311	256	260	12.0000
ACAA	chr11:760148-760353(+)$1	205	29	33	12.0000
ACAA	chr11:760139-760348(+)$1	209	38	42	12.0000
ACAA	chr9:127620155-127620384(-)$1	229	48	52	12.0000
ACAA	chr6:15468672-15468973(+)$1	301	205	209	12.0000
ACAA	chr19:38873815-38874122(+)$1	307	99	103	12.0000
ACAA	chr21:45193898-45194251(-)$1	353	101	105	12.0000
ACAA	chr17:48827854-48828120(+)$1	266	75	79	12.0000
ACAA	chr5:151170349-151170724(+)$1	375	123	127	12.0000
ACAA	chr18:43667974-43668281(-)$1	307	80	84	12.0000
ACAA	chr9:127620117-127620341(-)$1	224	5	9	12.0000
ACAA	chr5:446164-446497(+)$1	333	87	91	12.0000
ACAA	chr11:64537770-64537981(-)$1	211	124	128	12.0000
acaa	chr22:38352681-38352951(+)$1	270	16	20	12.0000
ACAA	chr1:23664918-23665153(-)$1	235	200	204	12.0000
ACAA	chr12:62687859-62688188(+)$1	329	162	166	12.0000
ACAA	chr2:101622377-101622623(+)$1	246	24	28	12.0000
ACAA	chr14:56103066-56103354(+)$1	288	2	6	12.0000
ACAA	chr5:138160142-138160537(+)$1	395	221	225	12.0000
ACAA	chr6:27115123-27115398(+)$1	275	1	5	12.0000
ACAA	chr16:85705909-85706210(+)$1	301	81	85	12.0000
ACAA	chr3:47770423-47770684(-)$1	261	159	163	12.0000
ACAA	chrX:153672402-153672658(+)$1	256	190	194	12.0000
ACAA	chr11:16776366-16776614(+)$1	248	226	230	12.0000
ACAA	chr1:154142775-154143004(-)$1	229	110	114	12.0000
ACAA	chrX:122744668-122744917(-)$1	249	117	121	12.0000
ACAA	chr7:102953291-102953637(-)$1	346	28	32	12.0000
ACAA	chr19:46191542-46191801(-)$1	259	87	91	12.0000
ACAA	chr20:34302041-34302315(-)$1	274	39	43	12.0000
ACAA	chr19:50001171-50001399(+)$1	228	74	78	12.0000
ACAA	chr6:30690234-30690483(+)$1	249	173	177	12.0000
ACAA	chr8:56986536-56986763(-)$1	227	114	118	12.0000
ACAA	chr8:67973985-67974366(-)$1	381	112	116	12.0000
ACAA	chr3:47870398-47870715(+)$1	317	62	66	12.0000
ACAA	chr16:84797591-84797960(+)$1	369	158	162	12.0000
ACAA	chr10:103921540-103921781(+)$1	241	122	126	12.0000
ACAA	chr12:123741398-123741746(+)$1	348	14	18	12.0000
ACAA	chr8:56986518-56986736(-)$1	218	87	91	12.0000
ACAA	chr1:206566800-206567084(+)$1	284	3	7	12.0000
ACAA	chr1:154130033-154130299(-)$1	266	139	143	12.0000
acaA	chr7:99013660-99013932(+)$1	272	36	40	12.0000
ACAA	chr17:80017733-80018014(-)$1	281	134	138	12.0000
ACAA	chr14:21837369-21837616(-)$1	247	8	12	12.0000
ACAA	chr10:73970387-73970690(-)$1	303	156	160	12.0000
ACAA	chr3:101311418-101311674(+)$1	256	171	175	12.0000
ACAA	chr12:108920106-108920359(-)$1	253	84	88	12.0000
ACAA	chr1:154144449-154144680(-)$1	231	60	64	12.0000
ACAA	chr4:76580241-76580524(-)$1	283	158	162	12.0000
ACAA	chr5:140085120-140085358(+)$1	238	21	25	12.0000
ACAA	chr2:47388761-47389000(-)$1	239	48	52	12.0000
ACAA	chr12:57106211-57106434(-)$1	223	104	108	12.0000
ACAA	chrX:135959970-135960247(-)$1	277	31	35	12.0000
ACAA	chr1:32374231-32374598(-)$1	367	288	292	12.0000
ACAA	chr4:129192379-129192668(-)$1	289	22	26	12.0000
ACAA	chr1:153964043-153964252(+)$1	209	32	36	12.0000
ACAA	chr5:33453324-33453618(+)$1	294	83	87	12.0000
ACAA	chr2:217364649-217364854(+)$1	205	101	105	12.0000
ACAA	chr7:35942692-35942926(+)$1	234	39	43	12.0000
ACAA	chr22:29935223-29935556(-)$1	333	269	273	12.0000
ACAA	chr14:100828025-100828333(-)$1	308	124	128	12.0000
ACAA	chr7:102952943-102953191(-)$1	248	142	146	12.0000
ACAA	chr11:3023707-3023932(-)$1	225	155	159	12.0000
ACAA	chr1:28564319-28564605(+)$1	286	43	47	12.0000
ACAA	chr12:108923818-108924118(-)$1	300	81	85	12.0000
acaa	chr12:49233531-49233793(-)$1	262	212	216	12.0000
ACAA	chr12:56572106-56572411(-)$1	305	118	122	12.0000
ACAA	chr9:127620184-127620441(-)$1	257	105	109	12.0000
ACAA	chr4:77951884-77952226(+)$1	342	112	116	12.0000
ACAA	chr11:118886476-118886718(-)$1	242	208	212	12.0000

#otherMatches

#Struct PSSM
^^^^	chr7:22852614-22852882(-)$1	268	65	69	12.0000
ffff	chr12:53421858-53422072(+)$1	214	204	208	12.0000
%%%%	chr22:20939301-20939579(+)$1	278	220	224	12.0000
::::	chr2:172848120-172848378(+)$1	258	32	36	12.0000
oooo	chr13:21714924-21715235(+)$1	311	256	260	12.0000
::::	chr11:760148-760353(+)$1	205	29	33	12.0000
::::	chr11:760139-760348(+)$1	209	38	42	12.0000
tttt	chr9:127620155-127620384(-)$1	229	48	52	12.0000
6666	chr6:15468672-15468973(+)$1	301	205	209	12.0000
++++	chr19:38873815-38874122(+)$1	307	99	103	12.0000
"""b	chr21:45193898-45194251(-)$1	353	101	105	12.0000
DDDD	chr17:48827854-48828120(+)$1	266	75	79	12.0000
::::	chr5:151170349-151170724(+)$1	375	123	127	12.0000
::::	chr18:43667974-43668281(-)$1	307	80	84	12.0000
::::	chr9:127620117-127620341(-)$1	224	5	9	12.0000
NNNN	chr5:446164-446497(+)$1	333	87	91	12.0000
::::	chr11:64537770-64537981(-)$1	211	124	128	12.0000
ggmm	chr22:38352681-38352951(+)$1	270	16	20	12.0000
EEEE	chr1:23664918-23665153(-)$1	235	200	204	12.0000
c(((	chr12:62687859-62688188(+)$1	329	162	166	12.0000
CC::	chr2:101622377-101622623(+)$1	246	24	28	12.0000
::CC	chr14:56103066-56103354(+)$1	288	2	6	12.0000
::::	chr5:138160142-138160537(+)$1	395	221	225	12.0000
DDDL	chr6:27115123-27115398(+)$1	275	1	5	12.0000
ooee	chr16:85705909-85706210(+)$1	301	81	85	12.0000
oodd	chr3:47770423-47770684(-)$1	261	159	163	12.0000
pppp	chrX:153672402-153672658(+)$1	256	190	194	12.0000
FFF:	chr11:16776366-16776614(+)$1	248	226	230	12.0000
9999	chr1:154142775-154143004(-)$1	229	110	114	12.0000
cc::	chrX:122744668-122744917(-)$1	249	117	121	12.0000
ffff	chr7:102953291-102953637(-)$1	346	28	32	12.0000
:BBK	chr19:46191542-46191801(-)$1	259	87	91	12.0000
ccc:	chr20:34302041-34302315(-)$1	274	39	43	12.0000
oooo	chr19:50001171-50001399(+)$1	228	74	78	12.0000
ddd2	chr6:30690234-30690483(+)$1	249	173	177	12.0000
%%%%	chr8:56986536-56986763(-)$1	227	114	118	12.0000
]fff	chr8:67973985-67974366(-)$1	381	112	116	12.0000
:::f	chr3:47870398-47870715(+)$1	317	62	66	12.0000
J}EE	chr16:84797591-84797960(+)$1	369	158	162	12.0000
mfff	chr10:103921540-103921781(+)$1	241	122	126	12.0000
ddqq	chr12:123741398-123741746(+)$1	348	14	18	12.0000
%%%%	chr8:56986518-56986736(-)$1	218	87	91	12.0000
::::	chr1:206566800-206567084(+)$1	284	3	7	12.0000
::::	chr1:154130033-154130299(-)$1	266	139	143	12.0000
cc::	chr7:99013660-99013932(+)$1	272	36	40	12.0000
KBBC	chr17:80017733-80018014(-)$1	281	134	138	12.0000
:EEE	chr14:21837369-21837616(-)$1	247	8	12	12.0000
mmmm	chr10:73970387-73970690(-)$1	303	156	160	12.0000
gggr	chr3:101311418-101311674(+)$1	256	171	175	12.0000
cnnn	chr12:108920106-108920359(-)$1	253	84	88	12.0000
::::	chr1:154144449-154144680(-)$1	231	60	64	12.0000
pppp	chr4:76580241-76580524(-)$1	283	158	162	12.0000
lllg	chr5:140085120-140085358(+)$1	238	21	25	12.0000
ddxx	chr2:47388761-47389000(-)$1	239	48	52	12.0000
::::	chr12:57106211-57106434(-)$1	223	104	108	12.0000
oooo	chrX:135959970-135960247(-)$1	277	31	35	12.0000
::::	chr1:32374231-32374598(-)$1	367	288	292	12.0000
e[cc	chr4:129192379-129192668(-)$1	289	22	26	12.0000
hhhh	chr1:153964043-153964252(+)$1	209	32	36	12.0000
ccc[	chr5:33453324-33453618(+)$1	294	83	87	12.0000
cc]c	chr2:217364649-217364854(+)$1	205	101	105	12.0000
::::	chr7:35942692-35942926(+)$1	234	39	43	12.0000
@@@@	chr22:29935223-29935556(-)$1	333	269	273	12.0000
ccc2	chr14:100828025-100828333(-)$1	308	124	128	12.0000
::::	chr7:102952943-102953191(-)$1	248	142	146	12.0000
hhhh	chr11:3023707-3023932(-)$1	225	155	159	12.0000
::::	chr1:28564319-28564605(+)$1	286	43	47	12.0000
dddd	chr12:108923818-108924118(-)$1	300	81	85	12.0000
yyyy	chr12:49233531-49233793(-)$1	262	212	216	12.0000
MMMG	chr12:56572106-56572411(-)$1	305	118	122	12.0000
tttt	chr9:127620184-127620441(-)$1	257	105	109	12.0000
bb::	chr4:77951884-77952226(+)$1	342	112	116	12.0000
!bbq	chr11:118886476-118886718(-)$1	242	208	212	12.0000

#DB
....	chr7:22852614-22852882(-)$1	1	65	69	12.0000
))))	chr12:53421858-53422072(+)$1	1	204	208	12.0000
....	chr22:20939301-20939579(+)$1	1	220	224	12.0000
....	chr2:172848120-172848378(+)$1	1	32	36	12.0000
....	chr13:21714924-21715235(+)$1	1	256	260	12.0000
....	chr11:760148-760353(+)$1	1	29	33	12.0000
....	chr11:760139-760348(+)$1	1	38	42	12.0000
....	chr9:127620155-127620384(-)$1	1	48	52	12.0000
....	chr6:15468672-15468973(+)$1	1	205	209	12.0000
....	chr19:38873815-38874122(+)$1	1	99	103	12.0000
...(	chr21:45193898-45194251(-)$1	1	101	105	12.0000
((((	chr17:48827854-48828120(+)$1	1	75	79	12.0000
....	chr5:151170349-151170724(+)$1	1	123	127	12.0000
....	chr18:43667974-43668281(-)$1	1	80	84	12.0000
....	chr9:127620117-127620341(-)$1	1	5	9	12.0000
....	chr5:446164-446497(+)$1	1	87	91	12.0000
....	chr11:64537770-64537981(-)$1	1	124	128	12.0000
((..	chr22:38352681-38352951(+)$1	1	16	20	12.0000
))))	chr1:23664918-23665153(-)$1	1	200	204	12.0000
(...	chr12:62687859-62688188(+)$1	1	162	166	12.0000
((..	chr2:101622377-101622623(+)$1	1	24	28	12.0000
..((	chr14:56103066-56103354(+)$1	1	2	6	12.0000
....	chr5:138160142-138160537(+)$1	1	221	225	12.0000
(((.	chr6:27115123-27115398(+)$1	1	1	5	12.0000
..))	chr16:85705909-85706210(+)$1	1	81	85	12.0000
..))	chr3:47770423-47770684(-)$1	1	159	163	12.0000
....	chrX:153672402-153672658(+)$1	1	190	194	12.0000
))).	chr11:16776366-16776614(+)$1	1	226	230	12.0000
....	chr1:154142775-154143004(-)$1	1	110	114	12.0000
))..	chrX:122744668-122744917(-)$1	1	117	121	12.0000
))))	chr7:102953291-102953637(-)$1	1	28	32	12.0000
.((.	chr19:46191542-46191801(-)$1	1	87	91	12.0000
))).	chr20:34302041-34302315(-)$1	1	39	43	12.0000
....	chr19:50001171-50001399(+)$1	1	74	78	12.0000
))).	chr6:30690234-30690483(+)$1	1	173	177	12.0000
....	chr8:56986536-56986763(-)$1	1	114	118	12.0000
.)))	chr8:67973985-67974366(-)$1	1	112	116	12.0000
...(	chr3:47870398-47870715(+)$1	1	62	66	12.0000
).))	chr16:84797591-84797960(+)$1	1	158	162	12.0000
.)))	chr10:103921540-103921781(+)$1	1	122	126	12.0000
((..	chr12:123741398-123741746(+)$1	1	14	18	12.0000
....	chr8:56986518-56986736(-)$1	1	87	91	12.0000
....	chr1:206566800-206567084(+)$1	1	3	7	12.0000
....	chr1:154130033-154130299(-)$1	1	139	143	12.0000
))..	chr7:99013660-99013932(+)$1	1	36	40	12.0000
.(((	chr17:80017733-80018014(-)$1	1	134	138	12.0000
.(((	chr14:21837369-21837616(-)$1	1	8	12	12.0000
....	chr10:73970387-73970690(-)$1	1	156	160	12.0000
(((.	chr3:101311418-101311674(+)$1	1	171	175	12.0000
(...	chr12:108920106-108920359(-)$1	1	84	88	12.0000
....	chr1:154144449-154144680(-)$1	1	60	64	12.0000
....	chr4:76580241-76580524(-)$1	1	158	162	12.0000
...)	chr5:140085120-140085358(+)$1	1	21	25	12.0000
((..	chr2:47388761-47389000(-)$1	1	48	52	12.0000
....	chr12:57106211-57106434(-)$1	1	104	108	12.0000
....	chrX:135959970-135960247(-)$1	1	31	35	12.0000
....	chr1:32374231-32374598(-)$1	1	288	292	12.0000
(.((	chr4:129192379-129192668(-)$1	1	22	26	12.0000
((((	chr1:153964043-153964252(+)$1	1	32	36	12.0000
(((.	chr5:33453324-33453618(+)$1	1	83	87	12.0000
)).)	chr2:217364649-217364854(+)$1	1	101	105	12.0000
....	chr7:35942692-35942926(+)$1	1	39	43	12.0000
....	chr22:29935223-29935556(-)$1	1	269	273	12.0000
))).	chr14:100828025-100828333(-)$1	1	124	128	12.0000
....	chr7:102952943-102953191(-)$1	1	142	146	12.0000
((((	chr11:3023707-3023932(-)$1	1	155	159	12.0000
....	chr1:28564319-28564605(+)$1	1	43	47	12.0000
))))	chr12:108923818-108924118(-)$1	1	81	85	12.0000
....	chr12:49233531-49233793(-)$1	1	212	216	12.0000
...(	chr12:56572106-56572411(-)$1	1	118	122	12.0000
....	chr9:127620184-127620441(-)$1	1	105	109	12.0000
))..	chr4:77951884-77952226(+)$1	1	112	116	12.0000
.((.	chr11:118886476-118886718(-)$1	1	208	212	12.0000

#PSSM
A : 0.95	a : 0.04	
C : 0.95	c : 0.04	
A : 0.95	a : 0.04	
A : 0.97	a : 0.02	

#score	876.0000000000006
#seq	73
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_UTR_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
MMCCC{A{EEEEEKKFFFFFFdddd!!eeeee####gggggggpppppppggggggg333eeeee22dddd::::::ggggggg"""eeeeemmmmeeeee]ggggggg:dddd[ffffffooooooffffff]dddd:ggggggg[apppppppa]ggggggg::::::::::::FFFFFFYYEEEEE}A}CCC?????CCCiiiiiiiiillliiiiiiiiibb[a[ddddccc===========uuuuuuuuuuuu===========]ccc]d	chr5:74161184-74161477(-)$1	293	5	281	828.0000

#DB
..(((.(.(((((..((((((((((..(((((....(((((((.......)))))))...)))))..))))......(((((((...(((((....))))).))))))).((((.((((((......)))))).)))).(((((((.(.......).)))))))............))))))..))))).).))).....)))(((((((((...)))))))))((.(.((((((((((((((((((............))))))))))).))).)	chr5:74161184-74161477(-)$1	1	5	281	828.0000

#PSSM
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	

#score	828.0
#seq	1
#width	276
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_CDS_m1_run1.nuc.txt

#NT
CUGUUGC	chr7:6075000-6075263(-)$1	263	105	112	13.7049
CUGGUGU	chr7:923706-923945(+)$1	239	105	112	14.4426
CAGGUGC	chr21:46281466-46281750(-)$1	284	55	62	13.7868
cuggugc	chr17:74287954-74288216(-)$1	262	89	96	17.6393
CUGGUGC	chr17:74288684-74288958(-)$1	274	198	205	17.6393
CUGGUGG	chr12:50898802-50899051(+)$1	249	7	14	14.2786
CUGCUGC	chr17:29622109-29622374(+)$1	265	192	199	13.4590
cuggugc	chr17:74288931-74289173(-)$1	242	143	150	17.6393
CUGGGGC	chr17:80788037-80788281(+)$1	244	212	219	13.7049
CUGGUGC	chr19:59073599-59073870(+)$1	271	112	119	17.6393
CUGGUGC	chr20:32255395-32255638(-)$1	243	215	222	17.6393
CUGGUGA	chr2:27998725-27998979(+)$1	254	114	121	14.1147
cuggggc	chr2:231902504-231902747(+)$1	243	41	48	13.7049
CUGGUGA	chr7:141478453-141478703(+)$1	250	21	28	14.1147
CUGGUGC	chr17:74288472-74288769(-)$1	297	9	16	17.6393
cugcugc	chr12:121125100-121125338(+)$1	238	47	54	13.4590
CUGAUGC	chr4:52774982-52775246(+)$1	264	196	203	13.3770
cuggugc	chr17:74288199-74288433(-)$1	234	36	43	17.6393
CUGGUGC	chr2:11721003-11721259(+)$1	256	132	139	17.6393
CUGGUGU	chr17:29632050-29632282(+)$1	232	30	37	14.4426
CUGGAGC	chr3:49756505-49756844(+)$1	339	171	178	13.7868
CAGGUGC	chr17:80789358-80789625(+)$1	267	87	94	13.7868
CAGGUGC	chr1:1689671-1689937(-)$1	266	70	77	13.7868
CAGGUGC	chr21:46281627-46281848(-)$1	221	153	160	13.7868
CUGGUGU	chr3:99567523-99567841(+)$1	318	127	134	14.4426
CUGGAGC	chr19:8551019-8551270(+)$1	251	33	40	13.7868
CUGGUGC	chr17:74288346-74288606(-)$1	260	59	66	17.6393
cuggugc	chr17:74288881-74289131(-)$1	250	101	108	17.6393
CAGGUGC	chr1:1689858-1690096(-)$1	238	229	236	13.7868
CUGGAGC	chr2:186660608-186660931(-)$1	323	114	121	13.7868
CUGGCGC	chr2:97482449-97482776(+)$1	327	12	19	13.7049
CUGGUGC	chr17:74288406-74288672(-)$1	266	2	9	17.6393
CUGGUGA	chr3:99567146-99567389(+)$1	243	47	54	14.1147
CUGGUGU	chr7:923745-924047(+)$1	302	66	73	14.4426
CUGUUGC	chr7:6071026-6071307(-)$1	281	101	108	13.7049
CUGGUGC	chr17:76723594-76723859(-)$1	265	171	178	17.6393
CAGGUGC	chr9:139115446-139115710(-)$1	264	177	184	13.7868
CUGGUGU	chr17:29632263-29632537(+)$1	274	114	121	14.4426
cuggugg	chr11:940686-940966(+)$1	280	64	71	14.2786
CUGGUGU	chr3:99567453-99567697(+)$1	244	197	204	14.4426
CUGUUGC	chr6:32940774-32941007(+)$1	233	31	38	13.7049
CUGGUGG	chr1:247094471-247094745(-)$1	274	133	140	14.2786
cuggugc	chr17:74288258-74288504(-)$1	246	107	114	17.6393
CUGGGGC	chr12:50135945-50136257(+)$1	312	48	55	13.7049
CAGGUGC	chr17:48545686-48545949(+)$1	263	242	249	13.7868
CUGUUGC	chr7:6074953-6075200(-)$1	247	42	49	13.7049
cuggugc	chr17:74288818-74289081(-)$1	263	51	58	17.6393
CUGGUGC	chr17:74288569-74288819(-)$1	250	59	66	17.6393
CUGGUGC	chr16:48399219-48399570(-)$1	351	39	46	17.6393
CUGGUGG	chr2:231902561-231902869(+)$1	308	154	161	14.2786
CUGGUGC	chr19:59073422-59073737(+)$1	315	37	44	17.6393
CUGGCGC	chr8:94752559-94752810(-)$1	251	213	220	13.7049
GUGGUGC	chr7:104752861-104753089(-)$1	228	105	112	12.8032
CUGUUGC	chr6:32940753-32940974(+)$1	221	52	59	13.7049
cuggugc	chr17:74288036-74288310(-)$1	274	3	10	17.6393
CUGGUGG	chr17:80789584-80789875(+)$1	291	97	104	14.2786
CUGGUGC	chr17:74287802-74288027(-)$1	225	20	27	17.6393
CUGGUGU	chr17:29632112-29632463(+)$1	351	265	272	14.4426
CUGGUGC	chr14:24002712-24003013(+)$1	301	16	23	17.6393
CUGGAGC	chr11:9286484-9286849(-)$1	365	320	327	13.7868

#otherMatches

#Struct PSSM
a[fffff	chr2:97482368-97482640(+)$1	272	78	85	13.7049
a::::::	chr7:6075000-6075263(-)$1	263	105	112	13.7049
]eeeee:	chr7:923706-923945(+)$1	239	105	112	14.4426
DNNNNNC	chr21:46281466-46281750(-)$1	284	55	62	13.7868
b]bbddd	chr17:74287954-74288216(-)$1	262	89	96	17.6393
cccDDDD	chr17:74288684-74288958(-)$1	274	198	205	17.6393
c[ccc""	chr12:50898802-50899051(+)$1	249	7	14	14.2786
dd:::::	chr17:29622109-29622374(+)$1	265	192	199	13.4590
dddd22g	chr17:74288931-74289173(-)$1	242	143	150	17.6393
::GGGGG	chr17:80788037-80788281(+)$1	244	212	219	13.7049
d]dddd2	chr19:59073599-59073870(+)$1	271	112	119	17.6393
EEEE}BB	chr20:32255395-32255638(-)$1	243	215	222	17.6393
22bb]ff	chr2:27998725-27998979(+)$1	254	114	121	14.1147
fbb[ddd	chr2:231902504-231902747(+)$1	243	41	48	13.7049
&&ddddn	chr7:141478453-141478703(+)$1	250	21	28	14.1147
d[cccqq	chr17:74288472-74288769(-)$1	297	9	16	17.6393
::ccc[g	chr12:121125100-121125338(+)$1	238	47	54	13.4590
bccc[a!	chr4:52774982-52775246(+)$1	264	196	203	13.3770
EEEEE{B	chr17:74288199-74288433(-)$1	234	36	43	17.6393
gffffff	chr2:11721003-11721259(+)$1	256	132	139	17.6393
b]dddd:	chr17:29632050-29632282(+)$1	232	30	37	14.4426
dmmmmdd	chr3:49756505-49756844(+)$1	339	171	178	13.7868
ee]dddd	chr17:80789358-80789625(+)$1	267	87	94	13.7868
dmmmmdd	chr1:1689671-1689937(-)$1	266	70	77	13.7868
EEE}CCC	chr21:46281627-46281848(-)$1	221	153	160	13.7868
iiiia]g	chr3:99567523-99567841(+)$1	318	127	134	14.4426
ggg!!dd	chr19:8551019-8551270(+)$1	251	33	40	13.7868
CCCdddd	chr17:74288346-74288606(-)$1	260	59	66	17.6393
cccc!!h	chr17:74288881-74289131(-)$1	250	101	108	17.6393
BCCC}CC	chr1:1689858-1690096(-)$1	238	229	236	13.7868
]ddddcc	chr2:186660608-186660931(-)$1	323	114	121	13.7868
fff[ccc	chr2:97482449-97482776(+)$1	327	12	19	13.7049
:::DDDD	chr17:74288406-74288672(-)$1	266	2	9	17.6393
HHHH::b	chr3:99567146-99567389(+)$1	243	47	54	14.1147
qqqqccc	chr7:923745-924047(+)$1	302	66	73	14.4426
eee22ee	chr7:6071026-6071307(-)$1	281	101	108	13.7049
HHHHHHH	chr17:76723594-76723859(-)$1	265	171	178	17.6393
hiiiiii	chr9:139115446-139115710(-)$1	264	177	184	13.7868
ggooooo	chr17:29632263-29632537(+)$1	274	114	121	14.4426
b[eeeee	chr11:940686-940966(+)$1	280	64	71	14.2786
FFFFF::	chr3:99567453-99567697(+)$1	244	197	204	14.4426
gmmmmgg	chr6:32940774-32941007(+)$1	233	31	38	13.7049
ff]cccc	chr1:247094471-247094745(-)$1	274	133	140	14.2786
c[ccccc	chr17:74288258-74288504(-)$1	246	107	114	17.6393
hCCC{FF	chr12:50135945-50136257(+)$1	312	48	55	13.7049
HHHHHHH	chr17:48545686-48545949(+)$1	263	242	249	13.7868
ccc!!cc	chr7:6074953-6075200(-)$1	247	42	49	13.7049
Dccc!!h	chr17:74288818-74289081(-)$1	263	51	58	17.6393
dddd555	chr17:74288569-74288819(-)$1	250	59	66	17.6393
MMMBB{J	chr16:48399219-48399570(-)$1	351	39	46	17.6393
NNBB{DD	chr2:231902561-231902869(+)$1	308	154	161	14.2786
eee[a[c	chr19:59073422-59073737(+)$1	315	37	44	17.6393
FFFDDDD	chr8:94752559-94752810(-)$1	251	213	220	13.7049
eeeee]b	chr7:104752861-104753089(-)$1	228	105	112	12.8032
gmmmmgg	chr6:32940753-32940974(+)$1	221	52	59	13.7049
EEEEE{B	chr17:74288036-74288310(-)$1	274	3	10	17.6393
c55555e	chr17:80789584-80789875(+)$1	291	97	104	14.2786
CCCeeee	chr17:74287802-74288027(-)$1	225	20	27	17.6393
III}DDD	chr17:29632112-29632463(+)$1	351	265	272	14.4426
ggggggl	chr14:24002712-24003013(+)$1	301	16	23	17.6393
ccc]bb3	chr11:9286484-9286849(-)$1	365	320	327	13.7868

#DB
(.(((((	chr2:97482368-97482640(+)$1	1	78	85	13.7049
)......	chr7:6075000-6075263(-)$1	1	105	112	13.7049
.))))).	chr7:923706-923945(+)$1	1	105	112	14.4426
(.....(	chr21:46281466-46281750(-)$1	1	55	62	13.7868
).)))))	chr17:74287954-74288216(-)$1	1	89	96	17.6393
)))))))	chr17:74288684-74288958(-)$1	1	198	205	17.6393
(.(((..	chr12:50898802-50899051(+)$1	1	7	14	14.2786
)).....	chr17:29622109-29622374(+)$1	1	192	199	13.4590
))))..)	chr17:74288931-74289173(-)$1	1	143	150	17.6393
..)))))	chr17:80788037-80788281(+)$1	1	212	219	13.7049
).)))).	chr19:59073599-59073870(+)$1	1	112	119	17.6393
)))).))	chr20:32255395-32255638(-)$1	1	215	222	17.6393
..)).))	chr2:27998725-27998979(+)$1	1	114	121	14.1147
(((.(((	chr2:231902504-231902747(+)$1	1	41	48	13.7049
..((((.	chr7:141478453-141478703(+)$1	1	21	28	14.1147
(.(((..	chr17:74288472-74288769(-)$1	1	9	16	17.6393
..(((.(	chr12:121125100-121125338(+)$1	1	47	54	13.4590
((((.(.	chr4:52774982-52775246(+)$1	1	196	203	13.3770
(((((.(	chr17:74288199-74288433(-)$1	1	36	43	17.6393
)((((((	chr2:11721003-11721259(+)$1	1	132	139	17.6393
).)))).	chr17:29632050-29632282(+)$1	1	30	37	14.4426
(....))	chr3:49756505-49756844(+)$1	1	171	178	13.7868
)).))))	chr17:80789358-80789625(+)$1	1	87	94	13.7868
(....))	chr1:1689671-1689937(-)$1	1	70	77	13.7868
))).)))	chr21:46281627-46281848(-)$1	1	153	160	13.7868
))))).)	chr3:99567523-99567841(+)$1	1	127	134	14.4426
(((..((	chr19:8551019-8551270(+)$1	1	33	40	13.7868
(((((((	chr17:74288346-74288606(-)$1	1	59	66	17.6393
((((..(	chr17:74288881-74289131(-)$1	1	101	108	17.6393
)))).))	chr1:1689858-1690096(-)$1	1	229	236	13.7868
.))))))	chr2:186660608-186660931(-)$1	1	114	121	13.7868
(((.(((	chr2:97482449-97482776(+)$1	1	12	19	13.7049
...((((	chr17:74288406-74288672(-)$1	1	2	9	17.6393
((((..(	chr3:99567146-99567389(+)$1	1	47	54	14.1147
....)))	chr7:923745-924047(+)$1	1	66	73	14.4426
)))..))	chr7:6071026-6071307(-)$1	1	101	108	13.7049
)))))))	chr17:76723594-76723859(-)$1	1	171	178	17.6393
)((((((	chr9:139115446-139115710(-)$1	1	177	184	13.7868
((.....	chr17:29632263-29632537(+)$1	1	114	121	14.4426
(.(((((	chr11:940686-940966(+)$1	1	64	71	14.2786
)))))..	chr3:99567453-99567697(+)$1	1	197	204	14.4426
(....))	chr6:32940774-32941007(+)$1	1	31	38	13.7049
)).))))	chr1:247094471-247094745(-)$1	1	133	140	14.2786
(.(((((	chr17:74288258-74288504(-)$1	1	107	114	17.6393
)(((.((	chr12:50135945-50136257(+)$1	1	48	55	13.7049
)))))))	chr17:48545686-48545949(+)$1	1	242	249	13.7868
(((..((	chr7:6074953-6075200(-)$1	1	42	49	13.7049
((((..(	chr17:74288818-74289081(-)$1	1	51	58	17.6393
))))...	chr17:74288569-74288819(-)$1	1	59	66	17.6393
...((.(	chr16:48399219-48399570(-)$1	1	39	46	17.6393
..((.((	chr2:231902561-231902869(+)$1	1	154	161	14.2786
(((.(.(	chr19:59073422-59073737(+)$1	1	37	44	17.6393
)))))))	chr8:94752559-94752810(-)$1	1	213	220	13.7049
))))).)	chr7:104752861-104753089(-)$1	1	105	112	12.8032
(....))	chr6:32940753-32940974(+)$1	1	52	59	13.7049
(((((.(	chr17:74288036-74288310(-)$1	1	3	10	17.6393
).....)	chr17:80789584-80789875(+)$1	1	97	104	14.2786
(((((((	chr17:74287802-74288027(-)$1	1	20	27	17.6393
))).)))	chr17:29632112-29632463(+)$1	1	265	272	14.4426
((((((.	chr14:24002712-24003013(+)$1	1	16	23	17.6393
))).)).	chr11:9286484-9286849(-)$1	1	320	327	13.7868

#PSSM
C : 0.81	c : 0.16	G : 0.01	
U : 0.72	u : 0.16	A : 0.11	
G : 0.83	g : 0.16	
G : 0.72	g : 0.14	U : 0.08	C : 0.01	c : 0.01	A : 0.01	
U : 0.68	u : 0.14	A : 0.06	C : 0.04	G : 0.03	g : 0.01	
G : 0.83	g : 0.16	
C : 0.60	c : 0.14	U : 0.11	G : 0.06	A : 0.04	g : 0.01	

#score	923.1311475409844
#seq	61
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_transcript_m2_run1.nuc.txt

#NT
AAAAAAAA	chr1:240504661-240504878(+)$1	217	115	123	20.2765
AAAGAAAA	chr17:43148771-43149015(+)$1	244	191	199	16.7659
aaacaaaa	chr11:107955586-107955844(+)$1	258	160	168	16.3404
AAAAAAAA	chr17:16344437-16344663(+)$1	226	86	94	20.2765
AAAGAAAA	chr7:99928310-99928541(-)$1	231	165	173	16.7659
AAAGAAAA	chr12:97373209-97373439(-)$1	230	138	146	16.7659
AAAAAAAA	chr17:16344513-16344715(+)$1	202	10	18	20.2765
aaaaagaa	chr6:25192558-25192775(+)$1	217	30	38	15.8085
AAUAAAAA	chr7:148638529-148638737(+)$1	208	171	179	17.0851
AAAAGAAA	chr11:70199953-70200164(-)$1	211	193	201	16.0212
aaaaagaa	chr6:25192553-25192758(+)$1	205	35	43	15.8085
AAAAAAAC	chr4:154187963-154188175(-)$1	212	123	131	15.7021
aaaaaaaa	chr15:52176713-52176951(+)$1	238	135	143	20.2765
AACAaaaa	chr2:200647981-200648205(-)$1	224	149	157	16.8723
uaaaaaaa	chr1:28567435-28567669(+)$1	234	132	140	15.5957
aaaaaaaa	chr15:75275590-75275818(-)$1	228	201	209	20.2765
acaaaaaa	chr13:50482733-50482956(-)$1	223	72	80	15.7021
AAUAAAAA	chr7:148638489-148638722(+)$1	233	211	219	17.0851
AAaaacaa	chrX:64905648-64905893(+)$1	245	144	152	15.7021
AAAAAAAA	chr1:240504644-240504861(+)$1	217	132	140	20.2765
aaagaaaa	chrX:41175697-41175937(+)$1	240	148	156	16.7659
aaauaaaa	chr19:6572888-6573107(-)$1	219	153	161	16.5531
aacaaAAA	chr11:118706641-118706851(+)$1	210	191	199	16.8723
aacaaAAA	chr11:118706618-118706841(+)$1	223	214	222	16.8723
aaaaAAAA	chr14:35402619-35402849(-)$1	230	23	31	20.2765
AAAAAAAA	chr17:38399425-38399671(+)$1	246	144	152	20.2765
aaagaaaa	chr1:153758103-153758343(-)$1	240	163	171	16.7659
AAAAAAGA	chr18:12760679-12760914(+)$1	235	149	157	15.5957
AAUAAAAA	chr7:148638543-148638749(+)$1	206	157	165	17.0851
AAUAAAAA	chr7:148638537-148638743(+)$1	206	163	171	17.0851
aaaauaaa	chr7:2704298-2704512(+)$1	214	117	125	15.8085
ACAAaaaa	chr2:42084392-42084603(-)$1	211	202	210	15.7021
AAAAGAAA	chr11:70199949-70200153(-)$1	204	182	190	16.0212
AAAAAAAC	chr4:154187975-154188196(-)$1	221	144	152	15.7021
AAUAAAAA	chr7:148638523-148638729(+)$1	206	177	185	17.0851
aaauaaaa	chrX:16930309-16930535(-)$1	226	217	225	16.5531
aaaaaaaa	chr14:50058853-50059098(-)$1	245	0	8	20.2765
AAUAAAAA	chr7:148638549-148638753(+)$1	204	151	159	17.0851
aaaaaaaa	chr14:50553660-50553878(+)$1	218	146	154	20.2765
AAAAGAAA	chr2:206890280-206890519(+)$1	239	144	152	16.0212
AAAAAAAA	chr9:46141536-46141748(-)$1	212	184	192	20.2765
aaaaaaaa	chr14:100049310-100049556(+)$1	246	184	192	20.2765
GAAAAAAA	chr7:6214740-6214979(-)$1	239	135	143	15.5957
AACAaaaa	chr2:200647958-200648181(-)$1	223	125	133	16.8723
AAAAAAUA	chr17:48463407-48463657(-)$1	250	156	164	15.5957
AAGAAAAA	chr1:180488055-180488286(-)$1	231	23	31	16.5531

#otherMatches

#Struct PSSM
^^^^^^^^	chrM:12176-12409(+)$1	233	150	158	16.5531
f]eeeee:	chr1:240504661-240504878(+)$1	217	115	123	20.2765
55ccc333	chr17:43148771-43149015(+)$1	244	191	199	16.7659
::::::::	chr11:107955586-107955844(+)$1	258	160	168	16.3404
d:::::::	chr17:16344437-16344663(+)$1	226	86	94	20.2765
HHHHHHH:	chr7:99928310-99928541(-)$1	231	165	173	16.7659
::::::::	chr12:97373209-97373439(-)$1	230	138	146	16.7659
::::::::	chr17:16344513-16344715(+)$1	202	10	18	20.2765
::::::::	chr6:25192558-25192775(+)$1	217	30	38	15.8085
III:::::	chr7:148638529-148638737(+)$1	208	171	179	17.0851
~~~CCC}B	chr11:70199953-70200164(-)$1	211	193	201	16.0212
::::::::	chr6:25192553-25192758(+)$1	205	35	43	15.8085
::::::::	chr4:154187963-154188175(-)$1	212	123	131	15.7021
J@@@@@@@	chr15:52176713-52176951(+)$1	238	135	143	20.2765
++++++++	chr2:200647981-200648205(-)$1	224	149	157	16.8723
::::::::	chr1:28567435-28567669(+)$1	234	132	140	15.5957
::::::::	chr15:75275590-75275818(-)$1	228	201	209	20.2765
::::::::	chr13:50482733-50482956(-)$1	223	72	80	15.7021
::::::::	chr7:148638489-148638722(+)$1	233	211	219	17.0851
^^^^^^^^	chrX:64905648-64905893(+)$1	245	144	152	15.7021
rrrrrrrr	chr1:240504644-240504861(+)$1	217	132	140	20.2765
::::::::	chrX:41175697-41175937(+)$1	240	148	156	16.7659
::::::::	chr19:6572888-6573107(-)$1	219	153	161	16.5531
::::::::	chr11:118706641-118706851(+)$1	210	191	199	16.8723
::::::::	chr11:118706618-118706841(+)$1	223	214	222	16.8723
::::::ff	chr14:35402619-35402849(-)$1	230	23	31	20.2765
''''''''	chr17:38399425-38399671(+)$1	246	144	152	20.2765
llleeeee	chr1:153758103-153758343(-)$1	240	163	171	16.7659
ff22ccc]	chr18:12760679-12760914(+)$1	235	149	157	15.5957
::::::::	chr7:148638543-148638749(+)$1	206	157	165	17.0851
dd%%%%%%	chr7:148638537-148638743(+)$1	206	163	171	17.0851
f:::::::	chr7:2704298-2704512(+)$1	214	117	125	15.8085
::::::::	chr2:42084392-42084603(-)$1	211	202	210	15.7021
###bbnnn	chr11:70199949-70200153(-)$1	204	182	190	16.0212
::::::::	chr4:154187975-154188196(-)$1	221	144	152	15.7021
::::::::	chr7:148638523-148638729(+)$1	206	177	185	17.0851
::::::::	chrX:16930309-16930535(-)$1	226	217	225	16.5531
::::::::	chr14:50058853-50059098(-)$1	245	0	8	20.2765
dd%%%%%%	chr7:148638549-148638753(+)$1	204	151	159	17.0851
^^^^^^^^	chr14:50553660-50553878(+)$1	218	146	154	20.2765
@@@@@@@@	chr2:206890280-206890519(+)$1	239	144	152	16.0212
>>>>>>>>	chr9:46141536-46141748(-)$1	212	184	192	20.2765
zzzzzzzz	chr14:100049310-100049556(+)$1	246	184	192	20.2765
pppppppd	chr7:6214740-6214979(-)$1	239	135	143	15.5957
uuuuuudd	chr2:200647958-200648181(-)$1	223	125	133	16.8723
::gggggg	chr17:48463407-48463657(-)$1	250	156	164	15.5957
d:::::==	chr1:180488055-180488286(-)$1	231	23	31	16.5531

#DB
........	chrM:12176-12409(+)$1	1	150	158	16.5531
).))))).	chr1:240504661-240504878(+)$1	1	115	123	20.2765
..)))...	chr17:43148771-43149015(+)$1	1	191	199	16.7659
........	chr11:107955586-107955844(+)$1	1	160	168	16.3404
).......	chr17:16344437-16344663(+)$1	1	86	94	20.2765
))))))).	chr7:99928310-99928541(-)$1	1	165	173	16.7659
........	chr12:97373209-97373439(-)$1	1	138	146	16.7659
........	chr17:16344513-16344715(+)$1	1	10	18	20.2765
........	chr6:25192558-25192775(+)$1	1	30	38	15.8085
))).....	chr7:148638529-148638737(+)$1	1	171	179	17.0851
...))).)	chr11:70199953-70200164(-)$1	1	193	201	16.0212
........	chr6:25192553-25192758(+)$1	1	35	43	15.8085
........	chr4:154187963-154188175(-)$1	1	123	131	15.7021
).......	chr15:52176713-52176951(+)$1	1	135	143	20.2765
........	chr2:200647981-200648205(-)$1	1	149	157	16.8723
........	chr1:28567435-28567669(+)$1	1	132	140	15.5957
........	chr15:75275590-75275818(-)$1	1	201	209	20.2765
........	chr13:50482733-50482956(-)$1	1	72	80	15.7021
........	chr7:148638489-148638722(+)$1	1	211	219	17.0851
........	chrX:64905648-64905893(+)$1	1	144	152	15.7021
........	chr1:240504644-240504861(+)$1	1	132	140	20.2765
........	chrX:41175697-41175937(+)$1	1	148	156	16.7659
........	chr19:6572888-6573107(-)$1	1	153	161	16.5531
........	chr11:118706641-118706851(+)$1	1	191	199	16.8723
........	chr11:118706618-118706841(+)$1	1	214	222	16.8723
......((	chr14:35402619-35402849(-)$1	1	23	31	20.2765
........	chr17:38399425-38399671(+)$1	1	144	152	20.2765
...)))))	chr1:153758103-153758343(-)$1	1	163	171	16.7659
))..))).	chr18:12760679-12760914(+)$1	1	149	157	15.5957
........	chr7:148638543-148638749(+)$1	1	157	165	17.0851
((......	chr7:148638537-148638743(+)$1	1	163	171	17.0851
).......	chr7:2704298-2704512(+)$1	1	117	125	15.8085
........	chr2:42084392-42084603(-)$1	1	202	210	15.7021
...((...	chr11:70199949-70200153(-)$1	1	182	190	16.0212
........	chr4:154187975-154188196(-)$1	1	144	152	15.7021
........	chr7:148638523-148638729(+)$1	1	177	185	17.0851
........	chrX:16930309-16930535(-)$1	1	217	225	16.5531
........	chr14:50058853-50059098(-)$1	1	0	8	20.2765
((......	chr7:148638549-148638753(+)$1	1	151	159	17.0851
........	chr14:50553660-50553878(+)$1	1	146	154	20.2765
........	chr2:206890280-206890519(+)$1	1	144	152	16.0212
........	chr9:46141536-46141748(-)$1	1	184	192	20.2765
........	chr14:100049310-100049556(+)$1	1	184	192	20.2765
.......)	chr7:6214740-6214979(-)$1	1	135	143	15.5957
......))	chr2:200647958-200648181(-)$1	1	125	133	16.8723
..((((((	chr17:48463407-48463657(-)$1	1	156	164	15.5957
).....((	chr1:180488055-180488286(-)$1	1	23	31	16.5531

#PSSM
A : 0.59	a : 0.36	u : 0.02	G : 0.02	
A : 0.59	a : 0.36	c : 0.02	C : 0.02	
A : 0.40	a : 0.36	U : 0.12	C : 0.04	c : 0.04	G : 0.02	
A : 0.51	a : 0.29	G : 0.06	g : 0.04	u : 0.04	U : 0.02	c : 0.02	
A : 0.48	a : 0.42	G : 0.06	u : 0.02	
A : 0.59	a : 0.34	g : 0.04	c : 0.02	
A : 0.55	a : 0.40	G : 0.02	U : 0.02	
A : 0.55	a : 0.40	C : 0.04	

#score	816.0851063829783
#seq	47
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_transcript_m2_run1.nuc.txt

#NT
GGGAGG	chr13:114555699-114555930(-)$1	231	27	33	18.0000
GGGAGG	chr16:85627606-85627872(+)$1	266	90	96	18.0000
GGGAGG	chr8:145149927-145150237(+)$1	310	265	271	18.0000
GGGAGG	chr22:32340724-32341030(+)$1	306	131	137	18.0000
GGGAGG	chr6:86352070-86352299(-)$1	229	5	11	18.0000
GGGAGG	chr9:96435163-96435490(+)$1	327	187	193	18.0000
GGGAGG	chr13:92000498-92000806(+)$1	308	205	211	18.0000
GGGAGG	chr5:154135174-154135469(+)$1	295	93	99	18.0000
GGGAGG	chr22:49885186-49885433(-)$1	247	1	7	18.0000
GGGAGG	chr11:586321-586565(+)$1	244	169	175	18.0000
gggagg	chr16:1429130-1429386(-)$1	256	34	40	18.0000
GGGAGG	chr7:1893067-1893299(-)$1	232	5	11	18.0000
GGGAGG	chr5:154135506-154135781(+)$1	275	85	91	18.0000
GGGAGG	chr16:88582979-88583229(+)$1	250	239	245	18.0000
GGGAGG	chr1:2126017-2126311(-)$1	294	279	285	18.0000
GGGAGG	chr11:65349452-65349687(+)$1	235	80	86	18.0000
GGGAGG	chr6:155055091-155055366(+)$1	275	109	115	18.0000
GGGAGG	chr19:18548047-18548297(-)$1	250	101	107	18.0000
GGGAGG	chr5:134260119-134260353(+)$1	234	99	105	18.0000
gggagg	chr8:9629594-9629826(+)$1	232	4	10	18.0000
gggagg	chr19:3698767-3699029(-)$1	262	104	110	18.0000
GGGAGG	chr22:50020637-50020943(-)$1	306	173	179	18.0000
GGGAGG	chr22:50031804-50032078(-)$1	274	94	100	18.0000
GGGAGG	chr7:101460950-101461219(+)$1	269	112	118	18.0000
GGGAGG	chr20:35486065-35486307(-)$1	242	228	234	18.0000
GGGAGG	chr19:4036827-4037097(+)$1	270	235	241	18.0000
GGGAGG	chr8:1780064-1780416(+)$1	352	70	76	18.0000
GGGAGG	chr16:88569803-88570072(+)$1	269	99	105	18.0000
GGGAGG	chr5:134259785-134260011(+)$1	226	167	173	18.0000
gggAGG	chr5:154134805-154135036(+)$1	231	186	192	18.0000
GGGAGG	chrM:14259-14470(-)$1	211	202	208	18.0000
gggagg	chr8:9629756-9630018(+)$1	262	19	25	18.0000
GGGAGG	chr1:44441402-44441622(+)$1	220	122	128	18.0000
GGGAGG	chr2:149639237-149639451(-)$1	214	195	201	18.0000
GGGAGG	chr9:136132897-136133186(-)$1	289	54	60	18.0000
GGGAGG	chr1:2161126-2161361(+)$1	235	74	80	18.0000
GGGAGG	chr16:89035485-89035777(-)$1	292	6	12	18.0000
GGGAGG	chr13:92000877-92001121(+)$1	244	110	116	18.0000
GGGAGG	chr22:20110900-20111147(+)$1	247	229	235	18.0000
GGGAGG	chr11:586398-586650(+)$1	252	92	98	18.0000
GGGAGG	chr10:103590315-103590541(-)$1	226	18	24	18.0000
GGGAGG	chr1:234745079-234745357(-)$1	278	24	30	18.0000
GGGAGG	chr19:798032-798280(+)$1	248	3	9	18.0000
GGGAGG	chrM:14157-14378(-)$1	221	110	116	18.0000

#otherMatches

#Struct PSSM
:::::F	chrM:14223-14450(-)$1	227	182	188	18.0000
ccc]bb	chr13:114555699-114555930(-)$1	231	27	33	18.0000
a]gggg	chr16:85627606-85627872(+)$1	266	90	96	18.0000
fff22b	chr8:145149927-145150237(+)$1	310	265	271	18.0000
a&&&&&	chr22:32340724-32341030(+)$1	306	131	137	18.0000
nnnnne	chr6:86352070-86352299(-)$1	229	5	11	18.0000
qqqqqq	chr9:96435163-96435490(+)$1	327	187	193	18.0000
d333hh	chr13:92000498-92000806(+)$1	308	205	211	18.0000
======	chr5:154135174-154135469(+)$1	295	93	99	18.0000
::::::	chr22:49885186-49885433(-)$1	247	1	7	18.0000
eeeedd	chr11:586321-586565(+)$1	244	169	175	18.0000
FFFEEE	chr16:1429130-1429386(-)$1	256	34	40	18.0000
ALLLCC	chr7:1893067-1893299(-)$1	232	5	11	18.0000
DDD{BB	chr5:154135506-154135781(+)$1	275	85	91	18.0000
JJJJJJ	chr16:88582979-88583229(+)$1	250	239	245	18.0000
ffffff	chr1:2126017-2126311(-)$1	294	279	285	18.0000
hhh::f	chr11:65349452-65349687(+)$1	235	80	86	18.0000
ccc::D	chr6:155055091-155055366(+)$1	275	109	115	18.0000
GGG~~~	chr19:18548047-18548297(-)$1	250	101	107	18.0000
ddddll	chr5:134260119-134260353(+)$1	234	99	105	18.0000
::::::	chr8:9629594-9629826(+)$1	232	4	10	18.0000
ffffdd	chr19:3698767-3699029(-)$1	262	104	110	18.0000
bb[ddd	chr22:50020637-50020943(-)$1	306	173	179	18.0000
gggeee	chr22:50031804-50032078(-)$1	274	94	100	18.0000
fff::d	chr7:101460950-101461219(+)$1	269	112	118	18.0000
FFFFA}	chr20:35486065-35486307(-)$1	242	228	234	18.0000
CCCccc	chr19:4036827-4037097(+)$1	270	235	241	18.0000
HH:::f	chr8:1780064-1780416(+)$1	352	70	76	18.0000
======	chr16:88569803-88570072(+)$1	269	99	105	18.0000
::::::	chr5:134259785-134260011(+)$1	226	167	173	18.0000
b]bb]c	chr5:154134805-154135036(+)$1	231	186	192	18.0000
::::::	chrM:14259-14470(-)$1	211	202	208	18.0000
EEEEFF	chr8:9629756-9630018(+)$1	262	19	25	18.0000
GGGGGG	chr1:44441402-44441622(+)$1	220	122	128	18.0000
eeeeGG	chr2:149639237-149639451(-)$1	214	195	201	18.0000
f55555	chr9:136132897-136133186(-)$1	289	54	60	18.0000
fff444	chr1:2161126-2161361(+)$1	235	74	80	18.0000
FFF:ii	chr16:89035485-89035777(-)$1	292	6	12	18.0000
ggFFFF	chr13:92000877-92001121(+)$1	244	110	116	18.0000
rrrrrr	chr22:20110900-20111147(+)$1	247	229	235	18.0000
eeeeeb	chr11:586398-586650(+)$1	252	92	98	18.0000
[a[a[f	chr10:103590315-103590541(-)$1	226	18	24	18.0000
======	chr1:234745079-234745357(-)$1	278	24	30	18.0000
eeeee[	chr19:798032-798280(+)$1	248	3	9	18.0000
mmmmee	chrM:14157-14378(-)$1	221	110	116	18.0000

#DB
.....)	chrM:14223-14450(-)$1	1	182	188	18.0000
))).))	chr13:114555699-114555930(-)$1	1	27	33	18.0000
).))))	chr16:85627606-85627872(+)$1	1	90	96	18.0000
)))..)	chr8:145149927-145150237(+)$1	1	265	271	18.0000
(.....	chr22:32340724-32341030(+)$1	1	131	137	18.0000
.....)	chr6:86352070-86352299(-)$1	1	5	11	18.0000
......	chr9:96435163-96435490(+)$1	1	187	193	18.0000
)...))	chr13:92000498-92000806(+)$1	1	205	211	18.0000
))))))	chr5:154135174-154135469(+)$1	1	93	99	18.0000
......	chr22:49885186-49885433(-)$1	1	1	7	18.0000
))))((	chr11:586321-586565(+)$1	1	169	175	18.0000
((((((	chr16:1429130-1429386(-)$1	1	34	40	18.0000
(...((	chr7:1893067-1893299(-)$1	1	5	11	18.0000
(((.((	chr5:154135506-154135781(+)$1	1	85	91	18.0000
))))))	chr16:88582979-88583229(+)$1	1	239	245	18.0000
))))))	chr1:2126017-2126311(-)$1	1	279	285	18.0000
)))..(	chr11:65349452-65349687(+)$1	1	80	86	18.0000
)))..(	chr6:155055091-155055366(+)$1	1	109	115	18.0000
)))...	chr19:18548047-18548297(-)$1	1	101	107	18.0000
((((..	chr5:134260119-134260353(+)$1	1	99	105	18.0000
......	chr8:9629594-9629826(+)$1	1	4	10	18.0000
((((((	chr19:3698767-3699029(-)$1	1	104	110	18.0000
((.(((	chr22:50020637-50020943(-)$1	1	173	179	18.0000
))))))	chr22:50031804-50032078(-)$1	1	94	100	18.0000
)))..(	chr7:101460950-101461219(+)$1	1	112	118	18.0000
))))).	chr20:35486065-35486307(-)$1	1	228	234	18.0000
)))(((	chr19:4036827-4037097(+)$1	1	235	241	18.0000
((...(	chr8:1780064-1780416(+)$1	1	70	76	18.0000
((((((	chr16:88569803-88570072(+)$1	1	99	105	18.0000
......	chr5:134259785-134260011(+)$1	1	167	173	18.0000
).)).)	chr5:154134805-154135036(+)$1	1	186	192	18.0000
......	chrM:14259-14470(-)$1	1	202	208	18.0000
((((((	chr8:9629756-9630018(+)$1	1	19	25	18.0000
((((((	chr1:44441402-44441622(+)$1	1	122	128	18.0000
))))))	chr2:149639237-149639451(-)$1	1	195	201	18.0000
).....	chr9:136132897-136133186(-)$1	1	54	60	18.0000
)))...	chr1:2161126-2161361(+)$1	1	74	80	18.0000
(((.((	chr16:89035485-89035777(-)$1	1	6	12	18.0000
))))))	chr13:92000877-92001121(+)$1	1	110	116	18.0000
......	chr22:20110900-20111147(+)$1	1	229	235	18.0000
((((((	chr11:586398-586650(+)$1	1	92	98	18.0000
.(.(.(	chr10:103590315-103590541(-)$1	1	18	24	18.0000
((((((	chr1:234745079-234745357(-)$1	1	24	30	18.0000
(((((.	chr19:798032-798280(+)$1	1	3	9	18.0000
....))	chrM:14157-14378(-)$1	1	110	116	18.0000

#PSSM
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
A : 0.91	a : 0.08	
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	

#score	810.0000000000001
#seq	45
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_transcript_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
:::FFFFFFQQQQQQQQFFFFFFMMMMFFFFFF:::eeeeeccc[ccc[bblllbb]ccc]ccc333eeeee:::::FFFFFFJJJJJJJJJJJJccc[eeeee"""ffffff!!a[ccc+++++++++++++ddddddddammmma]dddd55555dddd]ccca22ffffff55555eeeeeccceeeee[assssssssssaeeeeeJJJJJJJJJJJJ}FFFFFF@@@@@@@@@@@FFFFFF}FFFFFF@@@@@@@@@@@@FFFF	chr17:27047460-27047733(+)$1	273	0	269	807.0000

#DB
...((((((........((((((....((((((...((((((((.(((.((...)).))).)))...))))).....(((((((((((((((((((((.(((((...((((((..(.(((.............(((((((((....).)))).....)))).))))..)))))).....))))))))(((((.(..........)))))))))))))))))).))))))...........)))))).))))))............))))	chr17:27047460-27047733(+)$1	1	0	269	807.0000

#PSSM
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	

#score	807.0
#seq	1
#width	269
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_transcript_m1_run1.nuc.txt

#NT
UUUUUUCA	chr2:201814060-201814354(-)$1	294	265	273	17.3333
uuuuuuaa	chr15:43445997-43446331(+)$1	334	99	107	13.4736
UAUUUUCU	chr1:990364-990588(+)$1	224	28	36	14.7017
UUUUUUAA	chr15:44707721-44708004(+)$1	283	131	139	13.4736
UAUUUUCU	chr10:104622672-104622944(+)$1	272	95	103	14.7017
UUCUUUCU	chr6:47200117-47200430(-)$1	313	98	106	14.4385
UUUUUUCU	chr4:39500413-39500663(-)$1	250	31	39	18.5614
AUUUUUCU	chr12:9262262-9262517(-)$1	255	84	92	14.4385
uuuuuuCU	chr17:38326997-38327254(+)$1	257	92	100	18.5614
UUUUUUCU	chr5:42800332-42800549(-)$1	217	90	98	18.5614
UUUUUUCC	chr17:79964408-79964629(+)$1	221	199	207	17.5964
UUUUUUUA	chr8:22278827-22279059(+)$1	232	64	72	13.2105
UUUUUUUU	chr1:8072161-8072412(-)$1	251	80	88	14.4385
UUUUUUCC	chr11:93465235-93465491(-)$1	256	24	32	17.5964
UUUUUUCG	chr3:185764076-185764395(-)$1	319	99	107	16.2807
UCUUUUCA	chr5:42800227-42800444(-)$1	217	23	31	13.3859
UUUUUUCC	chr3:171965476-171965718(+)$1	242	44	52	17.5964
UUUUUUCC	chr11:93469683-93469941(-)$1	258	95	103	17.5964
UUUUUUAU	chr3:10192214-10192460(+)$1	246	91	99	14.7017
UUUUUUGA	chr14:35031754-35032006(-)$1	252	76	84	13.1228
UUUUUUCU	chr10:35858103-35858353(+)$1	250	80	88	18.5614
UUGUUUCC	chr22:51149532-51149828(+)$1	296	284	292	13.7368
UUUUUUCC	chr2:216249422-216249659(-)$1	237	200	208	17.5964
AUUUUUCU	chr11:85372478-85372761(-)$1	283	89	97	14.4385
UUUUUUAC	chr2:223806642-223806930(+)$1	288	132	140	13.7368
UUUUGUCU	chr2:75118009-75118307(+)$1	298	190	198	13.7368
UUUUUUCC	chr19:39327089-39327341(-)$1	252	234	242	17.5964
UCUUUUCU	chr19:1257826-1258081(+)$1	255	62	70	14.6140
UUGUUUCU	chr11:2151691-2151912(-)$1	221	56	64	14.7017
uuauuucu	chr1:48694757-48695013(+)$1	256	97	105	14.3508
UAUUUUCA	chr12:46758016-46758237(-)$1	221	50	58	13.4736
GUUUUUCU	chr7:100782255-100782465(+)$1	210	98	106	14.1754
UUUUUUCC	chr6:25915551-25915808(-)$1	257	98	106	17.5964
UAUUUUCC	chr16:87400071-87400362(-)$1	291	92	100	13.7368
UUUUUUCC	chr3:42661735-42661981(+)$1	246	19	27	17.5964
uuguuuca	chr10:45467207-45467465(+)$1	258	152	160	13.4736
UUUUUUCA	chr11:10821414-10821696(-)$1	282	250	258	17.3333
uuuuuucc	chr11:65196905-65197133(+)$1	228	186	194	17.5964
UUUUUUCC	chr17:39847722-39847937(+)$1	215	100	108	17.5964
UUUUUUCU	chr4:177253106-177253408(+)$1	302	92	100	18.5614
UUUUUUCC	chr10:98281345-98281589(-)$1	244	16	24	17.5964
UUUUUUCU	chr16:2652996-2653250(+)$1	254	17	25	18.5614
UCUUUUCU	chr20:3193796-3194061(+)$1	265	0	8	14.6140
AUUUUUCU	chr2:216903709-216903981(-)$1	272	79	87	14.4385
UUCUUUCU	chr2:38545853-38546108(-)$1	255	114	122	14.4385
UUGUUUCC	chr19:47112662-47112928(+)$1	266	87	95	13.7368
UGUUUUCA	chr2:242291428-242291740(+)$1	312	7	15	13.2982
AUUUUUCU	chr13:92001942-92002235(+)$1	293	123	131	14.4385
UUUUUUCC	chr11:68524801-68525067(-)$1	266	97	105	17.5964
uUGUUUCU	chr9:124094914-124095166(+)$1	252	82	90	14.7017
CUUUUUCU	chr2:27726397-27726658(+)$1	261	101	109	14.1754
UUUUUUAA	chr2:228682036-228682259(+)$1	223	109	117	13.4736
UUUUUUCA	chr19:16212247-16212543(+)$1	296	99	107	17.3333
UGUUUUCU	chr2:27424328-27424609(-)$1	281	100	108	14.5263
UUUUUUCA	chr1:150548899-150549188(-)$1	289	93	101	17.3333
UUUUUUCU	chr21:18965452-18965761(+)$1	309	1	9	18.5614

#otherMatches

#Struct PSSM
::::::::	chr3:119156375-119156687(-)$1	312	293	301	18.5614
IIIIIIII	chr2:201814060-201814354(-)$1	294	265	273	17.3333
++++++++	chr15:43445997-43446331(+)$1	334	99	107	13.4736
"""cccap	chr1:990364-990588(+)$1	224	28	36	14.7017
ZZZDDDDZ	chr15:44707721-44708004(+)$1	283	131	139	13.4736
iiiiiiDD	chr10:104622672-104622944(+)$1	272	95	103	14.7017
&&&&&bb!	chr6:47200117-47200430(-)$1	313	98	106	14.4385
JJJJJJJJ	chr4:39500413-39500663(-)$1	250	31	39	18.5614
b22iiiii	chr12:9262262-9262517(-)$1	255	84	92	14.4385
::::::::	chr17:38326997-38327254(+)$1	257	92	100	18.5614
^^^^^^^^	chr5:42800332-42800549(-)$1	217	90	98	18.5614
wwwwwwww	chr17:79964408-79964629(+)$1	221	199	207	17.5964
========	chr8:22278827-22279059(+)$1	232	64	72	13.2105
!!cccooo	chr1:8072161-8072412(-)$1	251	80	88	14.4385
::::::::	chr11:93465235-93465491(-)$1	256	24	32	17.5964
:::::::F	chr3:185764076-185764395(-)$1	319	99	107	16.2807
F:::::::	chr5:42800227-42800444(-)$1	217	23	31	13.3859
eee[cccb	chr3:171965476-171965718(+)$1	242	44	52	17.5964
::hhhhhh	chr11:93469683-93469941(-)$1	258	95	103	17.5964
fffeeeee	chr3:10192214-10192460(+)$1	246	91	99	14.7017
sssssssg	chr14:35031754-35032006(-)$1	252	76	84	13.1228
::::::::	chr10:35858103-35858353(+)$1	250	80	88	18.5614
bCCC}CCC	chr22:51149532-51149828(+)$1	296	284	292	13.7368
gggggg::	chr2:216249422-216249659(-)$1	237	200	208	17.5964
========	chr11:85372478-85372761(-)$1	283	89	97	14.4385
dddd22a]	chr2:223806642-223806930(+)$1	288	132	140	13.7368
JJJJJJJf	chr2:75118009-75118307(+)$1	298	190	198	13.7368
=:JJJJJJ	chr19:39327089-39327341(-)$1	252	234	242	17.5964
dd]eeeee	chr19:1257826-1258081(+)$1	255	62	70	14.6140
8bb4444f	chr11:2151691-2151912(-)$1	221	56	64	14.7017
ee::::::	chr1:48694757-48695013(+)$1	256	97	105	14.3508
MCCCOOOO	chr12:46758016-46758237(-)$1	221	50	58	13.4736
=======:	chr7:100782255-100782465(+)$1	210	98	106	14.1754
::::::::	chr6:25915551-25915808(-)$1	257	98	106	17.5964
"ccc"""e	chr16:87400071-87400362(-)$1	291	92	100	13.7368
qqqqqqdd	chr3:42661735-42661981(+)$1	246	19	27	17.5964
ndddd]ff	chr10:45467207-45467465(+)$1	258	152	160	13.4736
hffffff]	chr11:10821414-10821696(-)$1	282	250	258	17.3333
@@@@@@@@	chr11:65196905-65197133(+)$1	228	186	194	17.5964
rrrrrrbb	chr17:39847722-39847937(+)$1	215	100	108	17.5964
========	chr4:177253106-177253408(+)$1	302	92	100	18.5614
nffffff:	chr10:98281345-98281589(-)$1	244	16	24	17.5964
FFFF::gg	chr16:2652996-2653250(+)$1	254	17	25	18.5614
:ccc[iii	chr20:3193796-3194061(+)$1	265	0	8	14.6140
fffftttt	chr2:216903709-216903981(-)$1	272	79	87	14.4385
GGGGGGGZ	chr2:38545853-38546108(-)$1	255	114	122	14.4385
d:::::::	chr19:47112662-47112928(+)$1	266	87	95	13.7368
GGGGGGTT	chr2:242291428-242291740(+)$1	312	7	15	13.2982
^^^^^^^^	chr13:92001942-92002235(+)$1	293	123	131	14.4385
ffffff33	chr11:68524801-68525067(-)$1	266	97	105	17.5964
55hhhhhh	chr9:124094914-124095166(+)$1	252	82	90	14.7017
77ffffff	chr2:27726397-27726658(+)$1	261	101	109	14.1754
::::eeee	chr2:228682036-228682259(+)$1	223	109	117	13.4736
::HHHHHH	chr19:16212247-16212543(+)$1	296	99	107	17.3333
dd::::::	chr2:27424328-27424609(-)$1	281	100	108	14.5263
EEE:dddd	chr1:150548899-150549188(-)$1	289	93	101	17.3333
::::::::	chr21:18965452-18965761(+)$1	309	1	9	18.5614

#DB
........	chr3:119156375-119156687(-)$1	1	293	301	18.5614
))))))))	chr2:201814060-201814354(-)$1	1	265	273	17.3333
........	chr15:43445997-43446331(+)$1	1	99	107	13.4736
...((((.	chr1:990364-990588(+)$1	1	28	36	14.7017
...)))).	chr15:44707721-44708004(+)$1	1	131	139	13.4736
))))))((	chr10:104622672-104622944(+)$1	1	95	103	14.7017
.....((.	chr6:47200117-47200430(-)$1	1	98	106	14.4385
((((((((	chr4:39500413-39500663(-)$1	1	31	39	18.5614
)..)))))	chr12:9262262-9262517(-)$1	1	84	92	14.4385
........	chr17:38326997-38327254(+)$1	1	92	100	18.5614
........	chr5:42800332-42800549(-)$1	1	90	98	18.5614
........	chr17:79964408-79964629(+)$1	1	199	207	17.5964
))))))))	chr8:22278827-22279059(+)$1	1	64	72	13.2105
..(((...	chr1:8072161-8072412(-)$1	1	80	88	14.4385
........	chr11:93465235-93465491(-)$1	1	24	32	17.5964
.......(	chr3:185764076-185764395(-)$1	1	99	107	16.2807
(.......	chr5:42800227-42800444(-)$1	1	23	31	13.3859
(((.((((	chr3:171965476-171965718(+)$1	1	44	52	17.5964
..((((((	chr11:93469683-93469941(-)$1	1	95	103	17.5964
))))))))	chr3:10192214-10192460(+)$1	1	91	99	14.7017
.......)	chr14:35031754-35032006(-)$1	1	76	84	13.1228
........	chr10:35858103-35858353(+)$1	1	80	88	18.5614
)))).)))	chr22:51149532-51149828(+)$1	1	284	292	13.7368
))))))..	chr2:216249422-216249659(-)$1	1	200	208	17.5964
))))))))	chr11:85372478-85372761(-)$1	1	89	97	14.4385
))))..).	chr2:223806642-223806930(+)$1	1	132	140	13.7368
)))))))(	chr2:75118009-75118307(+)$1	1	190	198	13.7368
).))))))	chr19:39327089-39327341(-)$1	1	234	242	17.5964
)).)))))	chr19:1257826-1258081(+)$1	1	62	70	14.6140
.))....)	chr11:2151691-2151912(-)$1	1	56	64	14.7017
))......	chr1:48694757-48695013(+)$1	1	97	105	14.3508
.(((....	chr12:46758016-46758237(-)$1	1	50	58	13.4736
))))))).	chr7:100782255-100782465(+)$1	1	98	106	14.1754
........	chr6:25915551-25915808(-)$1	1	98	106	17.5964
.(((...(	chr16:87400071-87400362(-)$1	1	92	100	13.7368
......))	chr3:42661735-42661981(+)$1	1	19	27	17.5964
.)))).))	chr10:45467207-45467465(+)$1	1	152	160	13.4736
))))))).	chr11:10821414-10821696(-)$1	1	250	258	17.3333
........	chr11:65196905-65197133(+)$1	1	186	194	17.5964
......))	chr17:39847722-39847937(+)$1	1	100	108	17.5964
))))))))	chr4:177253106-177253408(+)$1	1	92	100	18.5614
.)))))).	chr10:98281345-98281589(-)$1	1	16	24	17.5964
((((..((	chr16:2652996-2653250(+)$1	1	17	25	18.5614
.(((.(((	chr20:3193796-3194061(+)$1	1	0	8	14.6140
((((....	chr2:216903709-216903981(-)$1	1	79	87	14.4385
))))))).	chr2:38545853-38546108(-)$1	1	114	122	14.4385
).......	chr19:47112662-47112928(+)$1	1	87	95	13.7368
((((((..	chr2:242291428-242291740(+)$1	1	7	15	13.2982
........	chr13:92001942-92002235(+)$1	1	123	131	14.4385
))))))..	chr11:68524801-68525067(-)$1	1	97	105	17.5964
..))))))	chr9:124094914-124095166(+)$1	1	82	90	14.7017
..))))))	chr2:27726397-27726658(+)$1	1	101	109	14.1754
....((((	chr2:228682036-228682259(+)$1	1	109	117	13.4736
..((((((	chr19:16212247-16212543(+)$1	1	99	107	17.3333
))......	chr2:27424328-27424609(-)$1	1	100	108	14.5263
))).((((	chr1:150548899-150549188(-)$1	1	93	101	17.3333
........	chr21:18965452-18965761(+)$1	1	1	9	18.5614

#PSSM
U : 0.77	u : 0.12	A : 0.07	G : 0.01	C : 0.01	
U : 0.73	u : 0.10	A : 0.07	C : 0.05	G : 0.03	
U : 0.78	u : 0.07	G : 0.07	C : 0.03	a : 0.01	g : 0.01	
U : 0.89	u : 0.10	
U : 0.87	u : 0.10	G : 0.01	
U : 0.89	u : 0.10	
C : 0.78	c : 0.07	A : 0.07	U : 0.03	a : 0.01	G : 0.01	
U : 0.43	C : 0.26	A : 0.19	u : 0.03	a : 0.03	G : 0.01	c : 0.01	

#score	895.368421052633
#seq	57
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_transcript_m2_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
JJJJJJJJJJJeeeee####ddddpppppppddddeeeee::::GGGGGGGccc[ccc!!ddddbblllbb]dddd22ccc]ccc::::bb[ggggggg!!hhhhhhhhqqqqqqqqhhhhhhhhggggggg22bb:GGGGGGG:ccc[cccddddmmmmdddd]ccccccJJJJJJJJJJJJccc####eeeee[dddd!!eeeee"""ccc!!eeeee!!ffffffooooooffffff]eeeee22ccc333eeeee]dddd]eeeee7777	chr16:50650818-50651099(+)$1	281	1	275	822.0000

#DB
((((((((((((((((....((((.......)))))))))....((((((((((.(((..((((((...)).))))..))).)))....((.(((((((..((((((((........)))))))))))))))..)).))))))).(((.(((((((....)))).))))))))))))))))))(((....(((((.((((..(((((...(((..(((((..((((((......)))))).)))))..)))...))))).)))).)))))....	chr16:50650818-50651099(+)$1	1	1	275	822.0000

#PSSM
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	

#score	822.0
#seq	1
#width	274
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_CDS_m2_run2.nuc.txt

#NT
CAGC	chr12:125270551-125270850(-)$1	299	39	43	12.0000
CAGC	chr22:29196364-29196621(-)$1	257	122	126	12.0000
CAGC	chr22:29196261-29196498(-)$1	237	52	56	12.0000
CAGC	chr22:29192964-29193226(-)$1	262	57	61	12.0000
CAGC	chr16:18812651-18812873(-)$1	222	105	109	12.0000
CAGC	chr22:29193026-29193287(-)$1	261	118	122	12.0000
CAGC	chr2:235951239-235951550(+)$1	311	1	5	12.0000
cagc	chr17:48940563-48940813(-)$1	250	143	147	12.0000
CAGC	chr22:29196303-29196563(-)$1	260	64	68	12.0000
CAGC	chr20:52199147-52199453(-)$1	306	162	166	12.0000
CAGC	chr6:30712038-30712284(-)$1	246	3	7	12.0000
CAGC	chr1:145441080-145441317(+)$1	237	157	161	12.0000
CAGC	chr22:29196236-29196461(-)$1	225	15	19	12.0000
CAGC	chr1:214169892-214170163(+)$1	271	0	4	12.0000
CAGC	chr14:24114354-24114623(+)$1	269	53	57	12.0000
CAGC	chr21:34918539-34918786(+)$1	247	47	51	12.0000
CAGC	chr2:171572746-171572982(+)$1	236	33	37	12.0000
CAGC	chr7:6505613-6505898(-)$1	285	6	10	12.0000
CAGC	chr19:18704233-18704490(-)$1	257	219	223	12.0000
CAGC	chr6:89790812-89791072(+)$1	260	11	15	12.0000
CAGC	chr2:110372615-110372868(+)$1	253	17	21	12.0000
CAGC	chr2:171573458-171573682(+)$1	224	141	145	12.0000
CAGC	chr20:30193189-30193443(+)$1	254	18	22	12.0000
CAGC	chr22:29196197-29196436(-)$1	239	45	49	12.0000
CAGC	chr16:56643143-56643390(+)$1	247	107	111	12.0000
CAGC	chr3:32932966-32933189(+)$1	223	204	208	12.0000
CAGC	chr2:217363936-217364174(+)$1	238	145	149	12.0000
CAGC	chr3:186760849-186761160(+)$1	311	207	211	12.0000
CAGC	chr17:39847020-39847272(+)$1	252	34	38	12.0000
CAGC	chr20:4679970-4680249(+)$1	279	0	4	12.0000
CAGC	chr4:24585886-24586151(-)$1	265	86	90	12.0000
CAGC	chr20:278163-278466(+)$1	303	112	116	12.0000
cagc	chr7:100172805-100173066(-)$1	261	14	18	12.0000
CAGC	chr6:30711634-30711886(-)$1	252	137	141	12.0000
CAGC	chr14:35873556-35873829(-)$1	273	71	75	12.0000
CAGC	chr6:30690233-30690496(+)$1	263	139	143	12.0000
CAGC	chr22:29194967-29195183(-)$1	216	62	66	12.0000
CAGC	chr15:44086061-44086286(+)$1	225	6	10	12.0000
CAGC	chr16:18812673-18812938(-)$1	265	46	50	12.0000
CAGC	chr2:20647306-20647552(+)$1	246	180	184	12.0000
CAGC	chr14:35873629-35873919(-)$1	290	1	5	12.0000
CAGC	chr1:20980053-20980330(-)$1	277	173	177	12.0000

#otherMatches

#Struct PSSM
""dd	chr2:171573810-171574077(+)$1	267	7	11	12.0000
B{EE	chr12:125270551-125270850(-)$1	299	39	43	12.0000
ccca	chr22:29196364-29196621(-)$1	257	122	126	12.0000
JJJJ	chr22:29196261-29196498(-)$1	237	52	56	12.0000
ffff	chr22:29192964-29193226(-)$1	262	57	61	12.0000
eeee	chr16:18812651-18812873(-)$1	222	105	109	12.0000
cc:d	chr22:29193026-29193287(-)$1	261	118	122	12.0000
:::F	chr2:235951239-235951550(+)$1	311	1	5	12.0000
!!bb	chr17:48940563-48940813(-)$1	250	143	147	12.0000
llld	chr22:29196303-29196563(-)$1	260	64	68	12.0000
ff44	chr20:52199147-52199453(-)$1	306	162	166	12.0000
EEEE	chr6:30712038-30712284(-)$1	246	3	7	12.0000
===b	chr1:145441080-145441317(+)$1	237	157	161	12.0000
JJJJ	chr22:29196236-29196461(-)$1	225	15	19	12.0000
dddd	chr1:214169892-214170163(+)$1	271	0	4	12.0000
c[ee	chr14:24114354-24114623(+)$1	269	53	57	12.0000
bb]e	chr21:34918539-34918786(+)$1	247	47	51	12.0000
eee!	chr2:171572746-171572982(+)$1	236	33	37	12.0000
:EEE	chr7:6505613-6505898(-)$1	285	6	10	12.0000
dddd	chr19:18704233-18704490(-)$1	257	219	223	12.0000
::ee	chr6:89790812-89791072(+)$1	260	11	15	12.0000
[ggg	chr2:110372615-110372868(+)$1	253	17	21	12.0000
ffff	chr2:171573458-171573682(+)$1	224	141	145	12.0000
EEEM	chr20:30193189-30193443(+)$1	254	18	22	12.0000
BBBC	chr22:29196197-29196436(-)$1	239	45	49	12.0000
fffl	chr16:56643143-56643390(+)$1	247	107	111	12.0000
CYYD	chr3:32932966-32933189(+)$1	223	204	208	12.0000
cc]c	chr2:217363936-217364174(+)$1	238	145	149	12.0000
ffff	chr3:186760849-186761160(+)$1	311	207	211	12.0000
TTBB	chr17:39847020-39847272(+)$1	252	34	38	12.0000
:DDD	chr20:4679970-4680249(+)$1	279	0	4	12.0000
c]ff	chr4:24585886-24586151(-)$1	265	86	90	12.0000
333e	chr20:278163-278466(+)$1	303	112	116	12.0000
:eee	chr7:100172805-100173066(-)$1	261	14	18	12.0000
EEEE	chr6:30711634-30711886(-)$1	252	137	141	12.0000
::dd	chr14:35873556-35873829(-)$1	273	71	75	12.0000
KKA{	chr6:30690233-30690496(+)$1	263	139	143	12.0000
gggg	chr22:29194967-29195183(-)$1	216	62	66	12.0000
:eee	chr15:44086061-44086286(+)$1	225	6	10	12.0000
hhhh	chr16:18812673-18812938(-)$1	265	46	50	12.0000
d:::	chr2:20647306-20647552(+)$1	246	180	184	12.0000
::cc	chr14:35873629-35873919(-)$1	290	1	5	12.0000
ooa]	chr1:20980053-20980330(-)$1	277	173	177	12.0000

#DB
..((	chr2:171573810-171574077(+)$1	1	7	11	12.0000
(.((	chr12:125270551-125270850(-)$1	1	39	43	12.0000
))))	chr22:29196364-29196621(-)$1	1	122	126	12.0000
((((	chr22:29196261-29196498(-)$1	1	52	56	12.0000
((((	chr22:29192964-29193226(-)$1	1	57	61	12.0000
((((	chr16:18812651-18812873(-)$1	1	105	109	12.0000
)).(	chr22:29193026-29193287(-)$1	1	118	122	12.0000
...(	chr2:235951239-235951550(+)$1	1	1	5	12.0000
..((	chr17:48940563-48940813(-)$1	1	143	147	12.0000
...)	chr22:29196303-29196563(-)$1	1	64	68	12.0000
))..	chr20:52199147-52199453(-)$1	1	162	166	12.0000
((((	chr6:30712038-30712284(-)$1	1	3	7	12.0000
))))	chr1:145441080-145441317(+)$1	1	157	161	12.0000
((((	chr22:29196236-29196461(-)$1	1	15	19	12.0000
((((	chr1:214169892-214170163(+)$1	1	0	4	12.0000
(.((	chr14:24114354-24114623(+)$1	1	53	57	12.0000
)).)	chr21:34918539-34918786(+)$1	1	47	51	12.0000
(((.	chr2:171572746-171572982(+)$1	1	33	37	12.0000
.(((	chr7:6505613-6505898(-)$1	1	6	10	12.0000
((((	chr19:18704233-18704490(-)$1	1	219	223	12.0000
..((	chr6:89790812-89791072(+)$1	1	11	15	12.0000
.(((	chr2:110372615-110372868(+)$1	1	17	21	12.0000
))))	chr2:171573458-171573682(+)$1	1	141	145	12.0000
(((.	chr20:30193189-30193443(+)$1	1	18	22	12.0000
((((	chr22:29196197-29196436(-)$1	1	45	49	12.0000
(((.	chr16:56643143-56643390(+)$1	1	107	111	12.0000
)..)	chr3:32932966-32933189(+)$1	1	204	208	12.0000
)).)	chr2:217363936-217364174(+)$1	1	145	149	12.0000
))))	chr3:186760849-186761160(+)$1	1	207	211	12.0000
..((	chr17:39847020-39847272(+)$1	1	34	38	12.0000
.(((	chr20:4679970-4680249(+)$1	1	0	4	12.0000
).))	chr4:24585886-24586151(-)$1	1	86	90	12.0000
...)	chr20:278163-278466(+)$1	1	112	116	12.0000
.(((	chr7:100172805-100173066(-)$1	1	14	18	12.0000
))))	chr6:30711634-30711886(-)$1	1	137	141	12.0000
..((	chr14:35873556-35873829(-)$1	1	71	75	12.0000
..(.	chr6:30690233-30690496(+)$1	1	139	143	12.0000
((((	chr22:29194967-29195183(-)$1	1	62	66	12.0000
.(((	chr15:44086061-44086286(+)$1	1	6	10	12.0000
((((	chr16:18812673-18812938(-)$1	1	46	50	12.0000
)...	chr2:20647306-20647552(+)$1	1	180	184	12.0000
..((	chr14:35873629-35873919(-)$1	1	1	5	12.0000
..).	chr1:20980053-20980330(-)$1	1	173	177	12.0000

#PSSM
C : 0.95	c : 0.04	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	
C : 0.95	c : 0.04	

#score	516.0000000000001
#seq	43
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_CDS_m3_run1.nuc.txt

#NT
AGC	chr1:21976153-21976385(-)$1	232	43	46	8.9999
AGC	chr5:65466635-65466876(+)$1	241	135	138	8.9999
AGC	chr1:85117543-85117781(-)$1	238	2	5	8.9999
AGC	chr20:57568471-57568699(+)$1	228	4	7	8.9999
AGC	chr1:24989099-24989332(+)$1	233	8	11	8.9999
AGC	chr12:88505400-88505670(-)$1	270	88	91	8.9999
AGC	chr3:12949875-12950126(-)$1	251	21	24	8.9999
AGC	chr1:46079884-46080104(+)$1	220	95	98	8.9999
AGC	chr11:66361013-66361280(+)$1	267	65	68	8.9999
agc	chr4:174089905-174090193(+)$1	288	0	3	8.9999
AGC	chr1:205688665-205688905(-)$1	240	28	31	8.9999
AGC	chr3:184039605-184039839(+)$1	234	12	15	8.9999
AGC	chr20:34312472-34312700(-)$1	228	134	137	8.9999
AGC	chr4:83279711-83279934(-)$1	223	20	23	8.9999
AGC	chr11:10483077-10483376(+)$1	299	8	11	8.9999
AGC	chr2:17881505-17881724(-)$1	219	87	90	8.9999
AGC	chr1:163309147-163309368(+)$1	221	58	61	8.9999
AGC	chr5:95072658-95072880(+)$1	222	68	71	8.9999
AGC	chr6:160467512-160467766(+)$1	254	121	124	8.9999
AGC	chr16:4881878-4882282(-)$1	404	16	19	8.9999
AGC	chr1:224475546-224475787(-)$1	241	42	45	8.9999
AGC	chr20:34501910-34502183(+)$1	273	134	137	8.9999
AGC	chr10:120801820-120802079(-)$1	259	129	132	8.9999
AGC	chr13:73369420-73369671(+)$1	251	47	50	8.9999
AGC	chr20:29623031-29623305(+)$1	274	143	146	8.9999
AGC	chr15:44060586-44060819(+)$1	233	5	8	8.9999
AGC	chr2:230654234-230654465(-)$1	231	223	226	8.9999
AGC	chr8:103289194-103289465(-)$1	271	130	133	8.9999
AGC	chr12:69653106-69653419(+)$1	313	0	3	8.9999
AGC	chr5:145850966-145851240(+)$1	274	4	7	8.9999
AGC	chr1:52279653-52279855(-)$1	202	196	199	8.9999
AGC	chr1:14099533-14099785(+)$1	252	108	111	8.9999
AGC	chr20:32684491-32684711(-)$1	220	23	26	8.9999
AGC	chr1:46080877-46081105(+)$1	228	9	12	8.9999
AGC	chr6:30546158-30546442(+)$1	284	7	10	8.9999
AGC	chr3:9487275-9487502(+)$1	227	28	31	8.9999
agc	chr14:50255836-50256158(-)$1	322	7	10	8.9999
AGC	chr3:133331167-133331394(-)$1	227	16	19	8.9999
AGC	chr1:180010763-180011013(+)$1	250	52	55	8.9999
AGC	chr5:96089663-96089885(+)$1	222	38	41	8.9999
AGC	chr18:55282803-55283063(-)$1	260	139	142	8.9999
AGC	chr20:49236480-49236745(-)$1	265	174	177	8.9999
AGC	chr15:79184460-79184680(+)$1	220	24	27	8.9999
AGC	chr3:150127723-150127960(+)$1	237	26	29	8.9999
AGC	chr13:111955331-111955603(+)$1	272	47	50	8.9999
AGC	chr6:119345069-119345329(-)$1	260	0	3	8.9999
AGC	chr7:151871117-151871340(-)$1	223	44	47	8.9999
AGC	chr16:89348977-89349236(-)$1	259	20	23	8.9999
AGC	chr12:95668452-95668747(+)$1	295	127	130	8.9999
AGC	chr16:84779119-84779361(+)$1	242	16	19	8.9999
AGC	chr5:140056816-140057087(-)$1	271	43	46	8.9999
AGC	chr3:48732393-48732739(-)$1	346	18	21	8.9999
AGC	chr16:74339313-74339608(+)$1	295	28	31	8.9999
AGC	chr14:21679868-21680110(-)$1	242	61	64	8.9999
AGC	chr15:91297939-91298197(+)$1	258	60	63	8.9999
AGC	chr7:5792458-5792711(-)$1	253	180	183	8.9999
AGC	chr2:55536201-55536461(-)$1	260	21	24	8.9999
AGC	chr16:4925025-4925317(+)$1	292	13	16	8.9999
AGC	chr2:11389692-11389926(-)$1	234	39	42	8.9999
AGC	chr19:19767511-19767822(-)$1	311	3	6	8.9999
AGC	chr19:50436163-50436463(+)$1	300	16	19	8.9999
AGC	chr6:31726473-31726731(+)$1	258	14	17	8.9999
AGC	chr16:11862072-11862378(-)$1	306	76	79	8.9999
AGC	chr14:81992973-81993234(-)$1	261	49	52	8.9999
AGC	chr11:65688262-65688505(+)$1	243	155	158	8.9999
AGC	chr6:37336857-37337095(+)$1	238	27	30	8.9999
AGC	chr10:43292186-43292452(+)$1	266	2	5	8.9999
AGC	chr11:72405972-72406242(-)$1	270	36	39	8.9999
AGC	chr5:131039780-131040059(-)$1	279	1	4	8.9999
AGC	chr3:50091695-50091928(+)$1	233	151	154	8.9999
AGC	chr19:39963630-39963848(+)$1	218	69	72	8.9999
agc	chr20:7962843-7963165(-)$1	322	42	45	8.9999
AGC	chr19:16198738-16199011(+)$1	273	74	77	8.9999
AGC	chr15:43335409-43335670(-)$1	261	115	118	8.9999
AGC	chr12:62708470-62708685(+)$1	215	125	128	8.9999
AGC	chr15:69732240-69732476(+)$1	236	90	93	8.9999
AGC	chr4:1816079-1816401(-)$1	322	10	13	8.9999
AGC	chr1:158651216-158651426(-)$1	210	12	15	8.9999
AGC	chrX:122866701-122866962(-)$1	261	1	4	8.9999
AGC	chr17:7797405-7797655(+)$1	250	39	42	8.9999
AGC	chr2:113514559-113514804(-)$1	245	79	82	8.9999
AGC	chr5:132435136-132435348(+)$1	212	4	7	8.9999
AGC	chr11:9597958-9598202(+)$1	244	0	3	8.9999
AGC	chr12:14576978-14577225(+)$1	247	125	128	8.9999
AGC	chr6:99853864-99854098(-)$1	234	145	148	8.9999
AGC	chr13:20315639-20315887(-)$1	248	167	170	8.9999
AGC	chr15:57565125-57565428(+)$1	303	46	49	8.9999
AGC	chr19:49377217-49377463(+)$1	246	121	124	8.9999
AGC	chrX:122801916-122802171(-)$1	255	4	7	8.9999
AGC	chr17:48797010-48797238(+)$1	228	63	66	8.9999
AGC	chr3:121416825-121417092(-)$1	267	6	9	8.9999
AGC	chrX:70348404-70348666(+)$1	262	188	191	8.9999
AGC	chr2:233660774-233661013(+)$1	239	70	73	8.9999
AGC	chr4:56314848-56315136(-)$1	288	138	141	8.9999
AGC	chr16:19726083-19726361(-)$1	278	138	141	8.9999
AGC	chr7:155473468-155473689(+)$1	221	22	25	8.9999
agc	chr14:73572619-73572877(+)$1	258	9	12	8.9999
AGC	chr15:49052327-49052555(-)$1	228	100	103	8.9999

#otherMatches

#Struct PSSM
eec	chr1:237036975-237037235(+)$1	260	3	6	8.9999
###	chr1:21976153-21976385(-)$1	232	43	46	8.9999
&&&	chr5:65466635-65466876(+)$1	241	135	138	8.9999
:::	chr1:85117543-85117781(-)$1	238	2	5	8.9999
:BB	chr20:57568471-57568699(+)$1	228	4	7	8.9999
:::	chr1:24989099-24989332(+)$1	233	8	11	8.9999
::c	chr12:88505400-88505670(-)$1	270	88	91	8.9999
KKA	chr3:12949875-12950126(-)$1	251	21	24	8.9999
hh:	chr1:46079884-46080104(+)$1	220	95	98	8.9999
333	chr11:66361013-66361280(+)$1	267	65	68	8.9999
:DD	chr4:174089905-174090193(+)$1	288	0	3	8.9999
:dd	chr1:205688665-205688905(-)$1	240	28	31	8.9999
:bb	chr3:184039605-184039839(+)$1	234	12	15	8.9999
[cc	chr20:34312472-34312700(-)$1	228	134	137	8.9999
:ee	chr4:83279711-83279934(-)$1	223	20	23	8.9999
BB{	chr11:10483077-10483376(+)$1	299	8	11	8.9999
gg>	chr2:17881505-17881724(-)$1	219	87	90	8.9999
333	chr1:163309147-163309368(+)$1	221	58	61	8.9999
ggg	chr5:95072658-95072880(+)$1	222	68	71	8.9999
cpp	chr6:160467512-160467766(+)$1	254	121	124	8.9999
ddl	chr16:4881878-4882282(-)$1	404	16	19	8.9999
eee	chr1:224475546-224475787(-)$1	241	42	45	8.9999
+++	chr20:34501910-34502183(+)$1	273	134	137	8.9999
eee	chr10:120801820-120802079(-)$1	259	129	132	8.9999
FFA	chr13:73369420-73369671(+)$1	251	47	50	8.9999
bbf	chr20:29623031-29623305(+)$1	274	143	146	8.9999
:CC	chr15:44060586-44060819(+)$1	233	5	8	8.9999
occ	chr2:230654234-230654465(-)$1	231	223	226	8.9999
:dd	chr8:103289194-103289465(-)$1	271	130	133	8.9999
:::	chr12:69653106-69653419(+)$1	313	0	3	8.9999
ccc	chr5:145850966-145851240(+)$1	274	4	7	8.9999
GGG	chr1:52279653-52279855(-)$1	202	196	199	8.9999
hhh	chr1:14099533-14099785(+)$1	252	108	111	8.9999
eee	chr20:32684491-32684711(-)$1	220	23	26	8.9999
qqq	chr1:46080877-46081105(+)$1	228	9	12	8.9999
!ee	chr6:30546158-30546442(+)$1	284	7	10	8.9999
cc"	chr3:9487275-9487502(+)$1	227	28	31	8.9999
!!a	chr14:50255836-50256158(-)$1	322	7	10	8.9999
a]d	chr3:133331167-133331394(-)$1	227	16	19	8.9999
ooo	chr1:180010763-180011013(+)$1	250	52	55	8.9999
cc[	chr5:96089663-96089885(+)$1	222	38	41	8.9999
%%%	chr18:55282803-55283063(-)$1	260	139	142	8.9999
4ee	chr20:49236480-49236745(-)$1	265	174	177	8.9999
GGG	chr15:79184460-79184680(+)$1	220	24	27	8.9999
JJJ	chr3:150127723-150127960(+)$1	237	26	29	8.9999
III	chr13:111955331-111955603(+)$1	272	47	50	8.9999
:gg	chr6:119345069-119345329(-)$1	260	0	3	8.9999
:dd	chr7:151871117-151871340(-)$1	223	44	47	8.9999
QBB	chr16:89348977-89349236(-)$1	259	20	23	8.9999
ttt	chr12:95668452-95668747(+)$1	295	127	130	8.9999
GGG	chr16:84779119-84779361(+)$1	242	16	19	8.9999
ggg	chr5:140056816-140057087(-)$1	271	43	46	8.9999
DDD	chr3:48732393-48732739(-)$1	346	18	21	8.9999
::g	chr16:74339313-74339608(+)$1	295	28	31	8.9999
JJJ	chr14:21679868-21680110(-)$1	242	61	64	8.9999
eee	chr15:91297939-91298197(+)$1	258	60	63	8.9999
dd[	chr7:5792458-5792711(-)$1	253	180	183	8.9999
&ff	chr2:55536201-55536461(-)$1	260	21	24	8.9999
DDM	chr16:4925025-4925317(+)$1	292	13	16	8.9999
GGG	chr2:11389692-11389926(-)$1	234	39	42	8.9999
DDD	chr19:19767511-19767822(-)$1	311	3	6	8.9999
LLC	chr19:50436163-50436463(+)$1	300	16	19	8.9999
bb3	chr6:31726473-31726731(+)$1	258	14	17	8.9999
nnn	chr16:11862072-11862378(-)$1	306	76	79	8.9999
GGG	chr14:81992973-81993234(-)$1	261	49	52	8.9999
[bb	chr11:65688262-65688505(+)$1	243	155	158	8.9999
KKH	chr6:37336857-37337095(+)$1	238	27	30	8.9999
ddd	chr10:43292186-43292452(+)$1	266	2	5	8.9999
rrr	chr11:72405972-72406242(-)$1	270	36	39	8.9999
:::	chr5:131039780-131040059(-)$1	279	1	4	8.9999
mmb	chr3:50091695-50091928(+)$1	233	151	154	8.9999
ffn	chr19:39963630-39963848(+)$1	218	69	72	8.9999
ubb	chr20:7962843-7963165(-)$1	322	42	45	8.9999
fff	chr19:16198738-16199011(+)$1	273	74	77	8.9999
:::	chr15:43335409-43335670(-)$1	261	115	118	8.9999
b]d	chr12:62708470-62708685(+)$1	215	125	128	8.9999
!ee	chr15:69732240-69732476(+)$1	236	90	93	8.9999
mmm	chr4:1816079-1816401(-)$1	322	10	13	8.9999
eee	chr1:158651216-158651426(-)$1	210	12	15	8.9999
:dd	chrX:122866701-122866962(-)$1	261	1	4	8.9999
eee	chr17:7797405-7797655(+)$1	250	39	42	8.9999
C{D	chr2:113514559-113514804(-)$1	245	79	82	8.9999
:::	chr5:132435136-132435348(+)$1	212	4	7	8.9999
EEE	chr11:9597958-9598202(+)$1	244	0	3	8.9999
:dd	chr12:14576978-14577225(+)$1	247	125	128	8.9999
666	chr6:99853864-99854098(-)$1	234	145	148	8.9999
^^^	chr13:20315639-20315887(-)$1	248	167	170	8.9999
pee	chr15:57565125-57565428(+)$1	303	46	49	8.9999
III	chr19:49377217-49377463(+)$1	246	121	124	8.9999
!!e	chrX:122801916-122802171(-)$1	255	4	7	8.9999
ooe	chr17:48797010-48797238(+)$1	228	63	66	8.9999
DDD	chr3:121416825-121417092(-)$1	267	6	9	8.9999
hhh	chrX:70348404-70348666(+)$1	262	188	191	8.9999
]dd	chr2:233660774-233661013(+)$1	239	70	73	8.9999
rrr	chr4:56314848-56315136(-)$1	288	138	141	8.9999
ddd	chr16:19726083-19726361(-)$1	278	138	141	8.9999
DMM	chr7:155473468-155473689(+)$1	221	22	25	8.9999
:bb	chr14:73572619-73572877(+)$1	258	9	12	8.9999
&cc	chr15:49052327-49052555(-)$1	228	100	103	8.9999

#DB
(((	chr1:237036975-237037235(+)$1	1	3	6	8.9999
...	chr1:21976153-21976385(-)$1	1	43	46	8.9999
...	chr5:65466635-65466876(+)$1	1	135	138	8.9999
...	chr1:85117543-85117781(-)$1	1	2	5	8.9999
.((	chr20:57568471-57568699(+)$1	1	4	7	8.9999
...	chr1:24989099-24989332(+)$1	1	8	11	8.9999
..(	chr12:88505400-88505670(-)$1	1	88	91	8.9999
..(	chr3:12949875-12950126(-)$1	1	21	24	8.9999
)).	chr1:46079884-46080104(+)$1	1	95	98	8.9999
...	chr11:66361013-66361280(+)$1	1	65	68	8.9999
.((	chr4:174089905-174090193(+)$1	1	0	3	8.9999
.((	chr1:205688665-205688905(-)$1	1	28	31	8.9999
.((	chr3:184039605-184039839(+)$1	1	12	15	8.9999
.((	chr20:34312472-34312700(-)$1	1	134	137	8.9999
.((	chr4:83279711-83279934(-)$1	1	20	23	8.9999
((.	chr11:10483077-10483376(+)$1	1	8	11	8.9999
)).	chr2:17881505-17881724(-)$1	1	87	90	8.9999
...	chr1:163309147-163309368(+)$1	1	58	61	8.9999
(((	chr5:95072658-95072880(+)$1	1	68	71	8.9999
(..	chr6:160467512-160467766(+)$1	1	121	124	8.9999
((.	chr16:4881878-4882282(-)$1	1	16	19	8.9999
(((	chr1:224475546-224475787(-)$1	1	42	45	8.9999
...	chr20:34501910-34502183(+)$1	1	134	137	8.9999
(((	chr10:120801820-120802079(-)$1	1	129	132	8.9999
(((	chr13:73369420-73369671(+)$1	1	47	50	8.9999
(((	chr20:29623031-29623305(+)$1	1	143	146	8.9999
.((	chr15:44060586-44060819(+)$1	1	5	8	8.9999
.))	chr2:230654234-230654465(-)$1	1	223	226	8.9999
.((	chr8:103289194-103289465(-)$1	1	130	133	8.9999
...	chr12:69653106-69653419(+)$1	1	0	3	8.9999
(((	chr5:145850966-145851240(+)$1	1	4	7	8.9999
)))	chr1:52279653-52279855(-)$1	1	196	199	8.9999
(((	chr1:14099533-14099785(+)$1	1	108	111	8.9999
)))	chr20:32684491-32684711(-)$1	1	23	26	8.9999
...	chr1:46080877-46081105(+)$1	1	9	12	8.9999
.((	chr6:30546158-30546442(+)$1	1	7	10	8.9999
((.	chr3:9487275-9487502(+)$1	1	28	31	8.9999
..(	chr14:50255836-50256158(-)$1	1	7	10	8.9999
).)	chr3:133331167-133331394(-)$1	1	16	19	8.9999
...	chr1:180010763-180011013(+)$1	1	52	55	8.9999
((.	chr5:96089663-96089885(+)$1	1	38	41	8.9999
...	chr18:55282803-55283063(-)$1	1	139	142	8.9999
.))	chr20:49236480-49236745(-)$1	1	174	177	8.9999
(((	chr15:79184460-79184680(+)$1	1	24	27	8.9999
(((	chr3:150127723-150127960(+)$1	1	26	29	8.9999
(((	chr13:111955331-111955603(+)$1	1	47	50	8.9999
.((	chr6:119345069-119345329(-)$1	1	0	3	8.9999
.((	chr7:151871117-151871340(-)$1	1	44	47	8.9999
.((	chr16:89348977-89349236(-)$1	1	20	23	8.9999
...	chr12:95668452-95668747(+)$1	1	127	130	8.9999
(((	chr16:84779119-84779361(+)$1	1	16	19	8.9999
(((	chr5:140056816-140057087(-)$1	1	43	46	8.9999
(((	chr3:48732393-48732739(-)$1	1	18	21	8.9999
..(	chr16:74339313-74339608(+)$1	1	28	31	8.9999
(((	chr14:21679868-21680110(-)$1	1	61	64	8.9999
)))	chr15:91297939-91298197(+)$1	1	60	63	8.9999
((.	chr7:5792458-5792711(-)$1	1	180	183	8.9999
.((	chr2:55536201-55536461(-)$1	1	21	24	8.9999
((.	chr16:4925025-4925317(+)$1	1	13	16	8.9999
(((	chr2:11389692-11389926(-)$1	1	39	42	8.9999
(((	chr19:19767511-19767822(-)$1	1	3	6	8.9999
..(	chr19:50436163-50436463(+)$1	1	16	19	8.9999
)).	chr6:31726473-31726731(+)$1	1	14	17	8.9999
...	chr16:11862072-11862378(-)$1	1	76	79	8.9999
(((	chr14:81992973-81993234(-)$1	1	49	52	8.9999
.((	chr11:65688262-65688505(+)$1	1	155	158	8.9999
..(	chr6:37336857-37337095(+)$1	1	27	30	8.9999
(((	chr10:43292186-43292452(+)$1	1	2	5	8.9999
...	chr11:72405972-72406242(-)$1	1	36	39	8.9999
...	chr5:131039780-131040059(-)$1	1	1	4	8.9999
..)	chr3:50091695-50091928(+)$1	1	151	154	8.9999
((.	chr19:39963630-39963848(+)$1	1	69	72	8.9999
.))	chr20:7962843-7963165(-)$1	1	42	45	8.9999
)))	chr19:16198738-16199011(+)$1	1	74	77	8.9999
...	chr15:43335409-43335670(-)$1	1	115	118	8.9999
).)	chr12:62708470-62708685(+)$1	1	125	128	8.9999
.((	chr15:69732240-69732476(+)$1	1	90	93	8.9999
...	chr4:1816079-1816401(-)$1	1	10	13	8.9999
(((	chr1:158651216-158651426(-)$1	1	12	15	8.9999
.((	chrX:122866701-122866962(-)$1	1	1	4	8.9999
)))	chr17:7797405-7797655(+)$1	1	39	42	8.9999
(.(	chr2:113514559-113514804(-)$1	1	79	82	8.9999
...	chr5:132435136-132435348(+)$1	1	4	7	8.9999
(((	chr11:9597958-9598202(+)$1	1	0	3	8.9999
.((	chr12:14576978-14577225(+)$1	1	125	128	8.9999
...	chr6:99853864-99854098(-)$1	1	145	148	8.9999
...	chr13:20315639-20315887(-)$1	1	167	170	8.9999
.))	chr15:57565125-57565428(+)$1	1	46	49	8.9999
(((	chr19:49377217-49377463(+)$1	1	121	124	8.9999
..(	chrX:122801916-122802171(-)$1	1	4	7	8.9999
..)	chr17:48797010-48797238(+)$1	1	63	66	8.9999
(((	chr3:121416825-121417092(-)$1	1	6	9	8.9999
)))	chrX:70348404-70348666(+)$1	1	188	191	8.9999
.))	chr2:233660774-233661013(+)$1	1	70	73	8.9999
...	chr4:56314848-56315136(-)$1	1	138	141	8.9999
)))	chr16:19726083-19726361(-)$1	1	138	141	8.9999
(..	chr7:155473468-155473689(+)$1	1	22	25	8.9999
.((	chr14:73572619-73572877(+)$1	1	9	12	8.9999
.((	chr15:49052327-49052555(-)$1	1	100	103	8.9999

#PSSM
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	
C : 0.95	c : 0.04	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_CDS_m3_run2.nuc.txt

#NT
ACGGCCGAGUACUGCGGUGAGAGCCAGCGGGCCAGCGCCAGCCUCAACAGCCGCCAGAAGUACACGAGGAACCGGCGGCGGCGUGUGCGUGUAGGCCCGUGUGCGGGCGGCGGCGCGGGAGCAGCGCGGAGCGGCAGCCGGCUGGGGCGGGUGGCAUCAUGGACGAGAAGGUGUUCACCAAGGAGCUGGACCAGUGGAUCGAGCAGCUGAACGAGUGCAAGCAGCUGUCCGAGUCCCAGGUCAAGAGCCUCUGCGAGAAGGUGAGCUGUAGUACGGCUGCGGACAGCCGCCGCGGGGCCGAGCCCGCCGAGGAAAAGGCGGCCGUGAGGAGGGUGCAACAUGGCGGAGGCCGC	chr5:133561322-133561747(-)$1	425	37	390	506.5000

#otherMatches

#Struct PSSM
ggggg]aEEEEE}BB}CCCYYCCCZZZEEEEEZZZFFFFFF===========!!ffffff####eeeeellleeeeeffffff22===========:::::bb[bb[==========[a[cccmmmmccc]a==========]bb]bbffffff[eeeee[eeeee''''''''ccc[bb!!eeeee[dddd"""dddd[eeeeedddd!!gggggggbb[ccc!!gggggggpppppppggggggg]ccc333bb333ggggggg22dddd22eeeeedddd22ddddeeeee]bb]ccceeeeeeeeee]ffffffEEEEE:bbdddd[ddddaooooooa]dddd]dddd	chr3:57678433-57678874(-)$1	441	85	438	506.5000
lleeeee4444ddddcccmmmmccc:ggggggg[ddddbbccc%%%%%%ffffff^^^^^^^^^^^^^^^^^^ffffffccc]bb]dddd333gggggggDDDD{BBCCC{CCC{DDDD{AKKBB{DDDD{DDDD{CCCDDDD{BB{A:eeeeeddddtttttttttttdddd]eeeee:ccc!!bb[dddd[a[cccccc[ggggggguuuuuuuuuuuuggggggg]ccc]ccca]dddd]bb22ccceeeee[a!!ccc"""ggggggglllggggggg333ccc]aeeeeeA}BB}DDDDddddqqqqqqqqddddffffff!!aooooooa22ffffff:::CCC}DD	chr5:133561322-133561747(-)$1	425	37	390	506.5000

#DB
))))).)))))).)).)))..)))...)))))...))))))(((((((((((..((((((....(((((...)))))))))))..))))))))))).....((.((.((((((((((.(.(((....))).))))))))))).)).))((((((.(((((.(((((........(((.((..(((((.((((...((((.(((((((((..(((((((((.(((..(((((((.......))))))).)))...))...)))))))..))))..)))))))))..))))))))).)).))))))))))))).))))))))))).((((((.(((((......).)))).))))	chr3:57678433-57678874(-)$1	1	85	438	506.5000
..)))))....))))(((....))).(((((((.(((((((((......((((((..................))))))))).)).))))...)))))))((((.(((((.(((.((((.(..((.((((.((((.(((((((.((.(.(((((((((...........)))).))))).(((..((.((((.(.((((((.(((((((............))))))).))).)))).)))).))..)))(((((.(..(((...(((((((...)))))))...))).))))))).)).))))((((........))))((((((..(......)..))))))...))).))	chr5:133561322-133561747(-)$1	1	37	390	506.5000

#PSSM
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	

#score	1013.0
#seq	2
#width	353
#escape	false
#onStep	14911
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_transcript_m2_run2.nuc.txt

#NT
cccacuc	chr13:30131788-30132038(-)$1	250	27	34	13.5806
CCCACCC	chr17:29850636-29850899(+)$1	263	143	150	17.6129
cccaccc	chr20:8359613-8359851(+)$1	238	139	146	17.6129
CCCUCCC	chr22:47554315-47554567(+)$1	252	197	204	13.1774
CCCACCC	chr21:44083629-44083959(+)$1	330	92	99	17.6129
CCCACCC	chr1:43214378-43214627(-)$1	249	166	173	17.6129
cccaccu	chr17:78716609-78716902(+)$1	293	13	20	13.9032
CCCAGCC	chr17:7080763-7080968(-)$1	205	133	140	13.4999
cccaucc	chr13:50865050-50865295(+)$1	245	126	133	13.4999
cccaccu	chr3:185381932-185382161(-)$1	229	44	51	13.9032
CCCACCC	chr1:37942018-37942275(+)$1	257	229	236	17.6129
CUCACCC	chr1:55522194-55522462(+)$1	268	135	142	13.6612
cccaccc	chr11:70701701-70701944(-)$1	243	8	15	17.6129
CCCACCC	chr9:136642617-136642863(-)$1	246	169	176	17.6129
CCCACCG	chr9:136801658-136801890(-)$1	232	128	135	13.4193
CCCACCC	chr11:2153588-2153794(-)$1	206	74	81	17.6129
CCCAUCC	chr17:80916432-80916694(-)$1	262	202	209	13.4999
CCCAACC	chr6:2389168-2389432(+)$1	264	23	30	13.4193
CCCACCU	chr17:55754344-55754647(+)$1	303	281	288	13.9032
cacaccc	chr19:33949488-33949801(-)$1	313	113	120	14.3064
cccacuc	chr3:71270131-71270395(-)$1	264	116	123	13.5806
cccaccu	chr11:2152648-2152852(-)$1	204	164	171	13.9032
CGCACCC	chr20:62318538-62318757(+)$1	219	49	56	13.7419
cccaucc	chr4:8236217-8236488(+)$1	271	3	10	13.4999
cacaccc	chr22:46621486-46621724(+)$1	238	40	47	14.3064
cCCCCCC	chr13:30131638-30131946(-)$1	308	109	116	13.1774
CCCAGCC	chr14:101193856-101194125(+)$1	269	43	50	13.4999
CCCGCCC	chr17:46985948-46986222(+)$1	274	120	127	13.0967
CGCACCC	chr11:69489676-69490018(-)$1	342	81	88	13.7419
cacaccc	chr9:115627326-115627652(+)$1	326	9	16	14.3064
CACACCC	chr11:66011511-66011795(+)$1	284	25	32	14.3064
cccaccc	chr16:16265543-16265796(-)$1	253	0	7	17.6129
CCCACUC	chr11:1972988-1973252(+)$1	264	116	123	13.5806
cccaccc	chr12:121426019-121426303(+)$1	284	46	53	17.6129
ccccccc	chr1:8561800-8562062(-)$1	262	10	17	13.1774
CACACCC	chrX:152913029-152913294(+)$1	265	16	23	14.3064
cccacac	chr16:72921363-72921635(-)$1	272	3	10	13.5806
CCCACCC	chr16:588596-588886(+)$1	290	275	282	17.6129
CACACCC	chr12:52401384-52401627(+)$1	243	145	152	14.3064
CCCACUC	chr6:2376841-2377116(+)$1	275	16	23	13.5806
CACACCC	chr13:113984643-113984883(-)$1	240	108	115	14.3064
CCCAGCC	chr20:35485908-35486199(-)$1	291	202	209	13.4999
cacaccc	chr17:55726778-55727104(+)$1	326	155	162	14.3064
CCCAACC	chr20:8782688-8782967(+)$1	279	86	93	13.4193
cccaccu	chr11:2152524-2152728(-)$1	204	40	47	13.9032
cccaccc	chr9:116928621-116928897(+)$1	276	56	63	17.6129
CCCACCC	chr11:2153594-2153802(-)$1	208	82	89	17.6129
cccacac	chr9:136718993-136719224(-)$1	231	108	115	13.5806
CCCACCA	chr2:242254684-242254962(-)$1	278	232	239	13.4193
cccaccc	chr6:158474875-158475147(+)$1	272	71	78	17.6129
cccaccc	chr19:7665160-7665399(+)$1	239	11	18	17.6129
CCCACCU	chr17:79043207-79043485(+)$1	278	68	75	13.9032
cccaccc	chr21:46576367-46576589(+)$1	222	1	8	17.6129
cccacac	chr16:4718687-4718955(+)$1	268	146	153	13.5806
CCCACCC	chr2:47236318-47236608(+)$1	290	166	173	17.6129
cacaccc	chr3:10406990-10407370(-)$1	380	64	71	14.3064
CCCACCC	chr10:97925319-97925572(+)$1	253	32	39	17.6129
CCCUCCC	chr11:2153954-2154161(-)$1	207	196	203	13.1774
cccaccc	chr2:241448174-241448423(-)$1	249	152	159	17.6129
CCCACCU	chr19:2225698-2225916(+)$1	218	130	137	13.9032
cccacac	chrX:38466679-38466935(+)$1	256	90	97	13.5806

#otherMatches

#Struct PSSM
eee[iii	chr17:49336717-49337030(-)$1	313	20	27	17.6129
:::::::	chr13:30131788-30132038(-)$1	250	27	34	13.5806
EZZZEEE	chr17:29850636-29850899(+)$1	263	143	150	17.6129
$ccc"""	chr20:8359613-8359851(+)$1	238	139	146	17.6129
=4444cc	chr22:47554315-47554567(+)$1	252	197	204	13.1774
dddd$$$	chr21:44083629-44083959(+)$1	330	92	99	17.6129
22bb:::	chr1:43214378-43214627(-)$1	249	166	173	17.6129
LLLDDDD	chr17:78716609-78716902(+)$1	293	13	20	13.9032
dd:::BB	chr17:7080763-7080968(-)$1	205	133	140	13.4999
dddd]dd	chr13:50865050-50865295(+)$1	245	126	133	13.4999
$$$$$ff	chr3:185381932-185382161(-)$1	229	44	51	13.9032
:EEEEEE	chr1:37942018-37942275(+)$1	257	229	236	17.6129
doooooo	chr1:55522194-55522462(+)$1	268	135	142	13.6612
:::::::	chr11:70701701-70701944(-)$1	243	8	15	17.6129
=======	chr9:136642617-136642863(-)$1	246	169	176	17.6129
F}EEEEE	chr9:136801658-136801890(-)$1	232	128	135	13.4193
FFFFFFM	chr11:2153588-2153794(-)$1	206	74	81	17.6129
f:::CCC	chr17:80916432-80916694(-)$1	262	202	209	13.4999
:::::::	chr6:2389168-2389432(+)$1	264	23	30	13.4193
=======	chr17:55754344-55754647(+)$1	303	281	288	13.9032
:::::::	chr19:33949488-33949801(-)$1	313	113	120	14.3064
nnccc]a	chr3:71270131-71270395(-)$1	264	116	123	13.5806
ooooooc	chr11:2152648-2152852(-)$1	204	164	171	13.9032
A:iiiii	chr20:62318538-62318757(+)$1	219	49	56	13.7419
:::::::	chr4:8236217-8236488(+)$1	271	3	10	13.4999
^^^^^^^	chr22:46621486-46621724(+)$1	238	40	47	14.3064
:::::::	chr13:30131638-30131946(-)$1	308	109	116	13.1774
f"""ccc	chr14:101193856-101194125(+)$1	269	43	50	13.4999
===eeee	chr17:46985948-46986222(+)$1	274	120	127	13.0967
bccc!!h	chr11:69489676-69490018(-)$1	342	81	88	13.7419
:::::::	chr9:115627326-115627652(+)$1	326	9	16	14.3064
ddddlll	chr11:66011511-66011795(+)$1	284	25	32	14.3064
:::::::	chr16:16265543-16265796(-)$1	253	0	7	17.6129
fffffll	chr11:1972988-1973252(+)$1	264	116	123	13.5806
:::::::	chr12:121426019-121426303(+)$1	284	46	53	17.6129
nffffff	chr1:8561800-8562062(-)$1	262	10	17	13.1774
B{A{CCC	chrX:152913029-152913294(+)$1	265	16	23	14.3064
::::eee	chr16:72921363-72921635(-)$1	272	3	10	13.5806
b::::::	chr16:588596-588886(+)$1	290	275	282	17.6129
a333ccc	chr12:52401384-52401627(+)$1	243	145	152	14.3064
ooooood	chr6:2376841-2377116(+)$1	275	16	23	13.5806
::::fff	chr13:113984643-113984883(-)$1	240	108	115	14.3064
FF:dddd	chr20:35485908-35486199(-)$1	291	202	209	13.4999
:::::::	chr17:55726778-55727104(+)$1	326	155	162	14.3064
:ccc[dd	chr20:8782688-8782967(+)$1	279	86	93	13.4193
ooooooc	chr11:2152524-2152728(-)$1	204	40	47	13.9032
:::::::	chr9:116928621-116928897(+)$1	276	56	63	17.6129
FFFFFFM	chr11:2153594-2153802(-)$1	208	82	89	17.6129
b:HHHHH	chr9:136718993-136719224(-)$1	231	108	115	13.5806
CCC}HHH	chr2:242254684-242254962(-)$1	278	232	239	13.4193
:::::::	chr6:158474875-158475147(+)$1	272	71	78	17.6129
:::::::	chr19:7665160-7665399(+)$1	239	11	18	17.6129
ccnnnnn	chr17:79043207-79043485(+)$1	278	68	75	13.9032
:::::::	chr21:46576367-46576589(+)$1	222	1	8	17.6129
:::::::	chr16:4718687-4718955(+)$1	268	146	153	13.5806
:::::::	chr2:47236318-47236608(+)$1	290	166	173	17.6129
B:::eee	chr3:10406990-10407370(-)$1	380	64	71	14.3064
OOODDDD	chr10:97925319-97925572(+)$1	253	32	39	17.6129
:::::::	chr11:2153954-2154161(-)$1	207	196	203	13.1774
^^^^^^^	chr2:241448174-241448423(-)$1	249	152	159	17.6129
dzzzzzz	chr19:2225698-2225916(+)$1	218	130	137	13.9032
eeeee[e	chrX:38466679-38466935(+)$1	256	90	97	13.5806

#DB
(((.(((	chr17:49336717-49337030(-)$1	1	20	27	17.6129
.......	chr13:30131788-30132038(-)$1	1	27	34	13.5806
)...)))	chr17:29850636-29850899(+)$1	1	143	150	17.6129
.(((...	chr20:8359613-8359851(+)$1	1	139	146	17.6129
)....))	chr22:47554315-47554567(+)$1	1	197	204	13.1774
((((...	chr21:44083629-44083959(+)$1	1	92	99	17.6129
..))...	chr1:43214378-43214627(-)$1	1	166	173	17.6129
...((((	chr17:78716609-78716902(+)$1	1	13	20	13.9032
))...))	chr17:7080763-7080968(-)$1	1	133	140	13.4999
)))).))	chr13:50865050-50865295(+)$1	1	126	133	13.4999
.....((	chr3:185381932-185382161(-)$1	1	44	51	13.9032
.))))))	chr1:37942018-37942275(+)$1	1	229	236	17.6129
(......	chr1:55522194-55522462(+)$1	1	135	142	13.6612
.......	chr11:70701701-70701944(-)$1	1	8	15	17.6129
)))))))	chr9:136642617-136642863(-)$1	1	169	176	17.6129
).)))))	chr9:136801658-136801890(-)$1	1	128	135	13.4193
((((((.	chr11:2153588-2153794(-)$1	1	74	81	17.6129
)...)))	chr17:80916432-80916694(-)$1	1	202	209	13.4999
.......	chr6:2389168-2389432(+)$1	1	23	30	13.4193
)))))))	chr17:55754344-55754647(+)$1	1	281	288	13.9032
.......	chr19:33949488-33949801(-)$1	1	113	120	14.3064
..))).)	chr3:71270131-71270395(-)$1	1	116	123	13.5806
......)	chr11:2152648-2152852(-)$1	1	164	171	13.9032
(.(((((	chr20:62318538-62318757(+)$1	1	49	56	13.7419
.......	chr4:8236217-8236488(+)$1	1	3	10	13.4999
.......	chr22:46621486-46621724(+)$1	1	40	47	14.3064
.......	chr13:30131638-30131946(-)$1	1	109	116	13.1774
(...(((	chr14:101193856-101194125(+)$1	1	43	50	13.4999
)))))))	chr17:46985948-46986222(+)$1	1	120	127	13.0967
((((..(	chr11:69489676-69490018(-)$1	1	81	88	13.7419
.......	chr9:115627326-115627652(+)$1	1	9	16	14.3064
((((...	chr11:66011511-66011795(+)$1	1	25	32	14.3064
.......	chr16:16265543-16265796(-)$1	1	0	7	17.6129
(((((..	chr11:1972988-1973252(+)$1	1	116	123	13.5806
.......	chr12:121426019-121426303(+)$1	1	46	53	17.6129
.))))))	chr1:8561800-8562062(-)$1	1	10	17	13.1774
(.(.(((	chrX:152913029-152913294(+)$1	1	16	23	14.3064
....(((	chr16:72921363-72921635(-)$1	1	3	10	13.5806
)......	chr16:588596-588886(+)$1	1	275	282	17.6129
)...)))	chr12:52401384-52401627(+)$1	1	145	152	14.3064
......)	chr6:2376841-2377116(+)$1	1	16	23	13.5806
....(((	chr13:113984643-113984883(-)$1	1	108	115	14.3064
)).((((	chr20:35485908-35486199(-)$1	1	202	209	13.4999
.......	chr17:55726778-55727104(+)$1	1	155	162	14.3064
.(((.((	chr20:8782688-8782967(+)$1	1	86	93	13.4193
......)	chr11:2152524-2152728(-)$1	1	40	47	13.9032
.......	chr9:116928621-116928897(+)$1	1	56	63	17.6129
((((((.	chr11:2153594-2153802(-)$1	1	82	89	17.6129
).)))))	chr9:136718993-136719224(-)$1	1	108	115	13.5806
))).)))	chr2:242254684-242254962(-)$1	1	232	239	13.4193
.......	chr6:158474875-158475147(+)$1	1	71	78	17.6129
.......	chr19:7665160-7665399(+)$1	1	11	18	17.6129
((.....	chr17:79043207-79043485(+)$1	1	68	75	13.9032
.......	chr21:46576367-46576589(+)$1	1	1	8	17.6129
.......	chr16:4718687-4718955(+)$1	1	146	153	13.5806
.......	chr2:47236318-47236608(+)$1	1	166	173	17.6129
(...(((	chr3:10406990-10407370(-)$1	1	64	71	14.3064
...((((	chr10:97925319-97925572(+)$1	1	32	39	17.6129
.......	chr11:2153954-2154161(-)$1	1	196	203	13.1774
.......	chr2:241448174-241448423(-)$1	1	152	159	17.6129
(......	chr19:2225698-2225916(+)$1	1	130	137	13.9032
(((((.(	chrX:38466679-38466935(+)$1	1	90	97	13.5806

#PSSM
C : 0.54	c : 0.45	
C : 0.45	c : 0.35	a : 0.08	A : 0.06	G : 0.03	U : 0.01	
C : 0.56	c : 0.43	
A : 0.49	a : 0.41	U : 0.03	C : 0.01	G : 0.01	c : 0.01	
C : 0.46	c : 0.40	G : 0.04	u : 0.03	A : 0.03	U : 0.01	
C : 0.53	c : 0.33	a : 0.06	u : 0.03	U : 0.03	
C : 0.48	c : 0.37	u : 0.06	U : 0.04	G : 0.01	A : 0.01	

#score	928.6129032258059
#seq	62
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_transcript_m2_run1.nuc.txt

#NT
uugu	chrX:24004336-24004597(-)$1	261	156	160	11.9999
UUGU	chr20:21369967-21370261(+)$1	294	13	17	11.9999
UUGU	chr15:75890329-75890613(-)$1	284	177	181	11.9999
UUGU	chr12:80168052-80168377(-)$1	325	118	122	11.9999
UUGU	chr5:175810861-175811129(-)$1	268	195	199	11.9999
UUGU	chr17:30327175-30327420(+)$1	245	141	145	11.9999
UUGU	chr3:33908475-33908692(+)$1	217	24	28	11.9999
UUGU	chr20:35869733-35870006(+)$1	273	106	110	11.9999
UUGU	chr15:69071266-69071529(-)$1	263	48	52	11.9999
UUGU	chr12:121201607-121201894(-)$1	287	141	145	11.9999
UUGU	chr5:140041926-140042161(+)$1	235	74	78	11.9999
UUGU	chr7:151832650-151832929(-)$1	279	87	91	11.9999
UUGU	chr1:39758407-39758615(+)$1	208	95	99	11.9999
UUGU	chr5:102537452-102537687(+)$1	235	19	23	11.9999
UUGU	chr10:89513862-89514202(-)$1	340	10	14	11.9999
UUGU	chr1:1477199-1477541(-)$1	342	134	138	11.9999
UUGU	chr16:24551723-24551975(+)$1	252	52	56	11.9999
UUGU	chr1:59247065-59247309(-)$1	244	16	20	11.9999
UUGU	chr10:89312972-89313222(+)$1	250	77	81	11.9999
UUGU	chr20:45838134-45838412(-)$1	278	55	59	11.9999
UUGU	chr9:123366591-123366865(-)$1	274	78	82	11.9999
UUGU	chr8:61102210-61102548(-)$1	338	88	92	11.9999
UUGU	chr4:48500277-48500523(-)$1	246	95	99	11.9999
UUGU	chr9:34086339-34086559(-)$1	220	16	20	11.9999
UUGU	chr1:229577416-229577692(-)$1	276	61	65	11.9999
UUGU	chrX:102930619-102930863(-)$1	244	171	175	11.9999
UUGU	chr11:4113020-4113296(+)$1	276	37	41	11.9999
UUGU	chr8:48875480-48875701(+)$1	221	3	7	11.9999
UUGU	chr10:98981863-98982127(-)$1	264	20	24	11.9999
uugu	chr19:893465-893690(+)$1	225	204	208	11.9999
UUGU	chr11:118886450-118886698(-)$1	248	3	7	11.9999
UUGU	chr5:170818323-170818529(+)$1	206	22	26	11.9999
UUGU	chr18:29709236-29709520(+)$1	284	169	173	11.9999
UUGU	chr14:52466324-52466590(+)$1	266	25	29	11.9999
UUGU	chr3:182639211-182639479(+)$1	268	35	39	11.9999
UUGU	chr11:118620809-118621063(-)$1	254	3	7	11.9999
UUGU	chr11:67052912-67053176(+)$1	264	45	49	11.9999
UUGU	chr2:170591676-170591931(+)$1	255	119	123	11.9999
UUGU	chr8:74893736-74894057(+)$1	321	69	73	11.9999
UUGU	chr11:5364508-5364751(-)$1	243	84	88	11.9999
UUGU	chr7:91829385-91829666(-)$1	281	21	25	11.9999
UUGU	chr16:18803236-18803451(-)$1	215	147	151	11.9999
UUGU	chr22:35689706-35689961(+)$1	255	248	252	11.9999
UUGU	chr12:12874898-12875168(+)$1	270	48	52	11.9999
UUGU	chr5:61681681-61681983(+)$1	302	76	80	11.9999
UUGU	chr17:30658610-30658907(-)$1	297	31	35	11.9999
UUGU	chr5:133291341-133291640(-)$1	299	13	17	11.9999
UUGU	chr13:96444973-96445256(+)$1	283	118	122	11.9999
UUGU	chr22:50281074-50281329(+)$1	255	49	53	11.9999
UUGU	chr1:143896682-143896932(-)$1	250	48	52	11.9999
UUGU	chr1:151375730-151375997(-)$1	267	101	105	11.9999
UUGU	chr4:125585648-125585882(-)$1	234	6	10	11.9999
UUGU	chr12:57451693-57451934(-)$1	241	103	107	11.9999
UUGU	chr17:66526987-66527239(+)$1	252	21	25	11.9999
UUGU	chr10:120441382-120441626(-)$1	244	64	68	11.9999
UUGU	chr10:857222-857481(-)$1	259	82	86	11.9999
UUGU	chr13:46110302-46110559(+)$1	257	13	17	11.9999
UUGU	chr12:88443012-88443244(+)$1	232	35	39	11.9999
UUGU	chr12:121201521-121201768(-)$1	247	15	19	11.9999
uugu	chr1:173760903-173761110(+)$1	207	30	34	11.9999
UUGU	chr19:46893625-46893855(+)$1	230	92	96	11.9999
UUGU	chr5:145665927-145666166(+)$1	239	62	66	11.9999
UUGU	chr6:26523272-26523495(+)$1	223	86	90	11.9999
UUGU	chr7:105731955-105732214(-)$1	259	38	42	11.9999
UUGU	chr17:80200466-80200714(-)$1	248	102	106	11.9999
uugu	chrX:40459914-40460162(+)$1	248	33	37	11.9999
UUGU	chrX:135044582-135044864(-)$1	282	45	49	11.9999
UUGU	chr14:55819920-55820188(+)$1	268	69	73	11.9999
UUGU	chr9:133762861-133763149(+)$1	288	111	115	11.9999
UUGU	chr5:61682542-61682787(+)$1	245	10	14	11.9999
UUGU	chr22:28247607-28247858(-)$1	251	133	137	11.9999
UUGU	chr10:88194936-88195192(-)$1	256	102	106	11.9999
UUGU	chr17:29704527-29704771(+)$1	244	41	45	11.9999
UUGU	chr15:91425932-91426151(+)$1	219	57	61	11.9999
UUGU	chr3:72423722-72423984(-)$1	262	6	10	11.9999
UUGU	chr13:20660149-20660386(+)$1	237	110	114	11.9999
UUGU	chr19:811928-812167(+)$1	239	112	116	11.9999
UUGU	chr6:7251972-7252205(+)$1	233	21	25	11.9999
UUGU	chr20:48740692-48740916(-)$1	224	64	68	11.9999
UUGU	chr17:73315766-73316013(-)$1	247	76	80	11.9999
UUGU	chr12:57106468-57106687(-)$1	219	101	105	11.9999
UUGU	chr5:145668436-145668684(+)$1	248	94	98	11.9999
UUGU	chr11:2904697-2904940(-)$1	243	121	125	11.9999
uugu	chr4:53579999-53580247(+)$1	248	119	123	11.9999
UUGU	chr16:19563287-19563553(+)$1	266	106	110	11.9999
UUGU	chr2:172338078-172338366(+)$1	288	157	161	11.9999
UUGU	chrX:44971299-44971587(+)$1	288	38	42	11.9999
UUGU	chr1:155305904-155306190(-)$1	286	145	149	11.9999
UUGU	chr4:99801091-99801336(-)$1	245	6	10	11.9999

#otherMatches

#Struct PSSM
====	chrX:65238678-65238888(+)$1	210	107	111	11.9999
###c	chrX:24004336-24004597(-)$1	261	156	160	11.9999
glll	chr20:21369967-21370261(+)$1	294	13	17	11.9999
fff:	chr15:75890329-75890613(-)$1	284	177	181	11.9999
gg[f	chr12:80168052-80168377(-)$1	325	118	122	11.9999
::::	chr5:175810861-175811129(-)$1	268	195	199	11.9999
oooo	chr17:30327175-30327420(+)$1	245	141	145	11.9999
=[cc	chr3:33908475-33908692(+)$1	217	24	28	11.9999
bb]a	chr20:35869733-35870006(+)$1	273	106	110	11.9999
MCCC	chr15:69071266-69071529(-)$1	263	48	52	11.9999
%%%d	chr12:121201607-121201894(-)$1	287	141	145	11.9999
gggg	chr5:140041926-140042161(+)$1	235	74	78	11.9999
DDDD	chr7:151832650-151832929(-)$1	279	87	91	11.9999
[eee	chr1:39758407-39758615(+)$1	208	95	99	11.9999
mmab	chr5:102537452-102537687(+)$1	235	19	23	11.9999
:BBJ	chr10:89513862-89514202(-)$1	340	10	14	11.9999
DD}E	chr1:1477199-1477541(-)$1	342	134	138	11.9999
mmdd	chr16:24551723-24551975(+)$1	252	52	56	11.9999
e[a[	chr1:59247065-59247309(-)$1	244	16	20	11.9999
c[gg	chr10:89312972-89313222(+)$1	250	77	81	11.9999
66ff	chr20:45838134-45838412(-)$1	278	55	59	11.9999
>eee	chr9:123366591-123366865(-)$1	274	78	82	11.9999
GGGG	chr8:61102210-61102548(-)$1	338	88	92	11.9999
gg$$	chr4:48500277-48500523(-)$1	246	95	99	11.9999
b!!c	chr9:34086339-34086559(-)$1	220	16	20	11.9999
''''	chr1:229577416-229577692(-)$1	276	61	65	11.9999
FFYY	chrX:102930619-102930863(-)$1	244	171	175	11.9999
###c	chr11:4113020-4113296(+)$1	276	37	41	11.9999
DDDD	chr8:48875480-48875701(+)$1	221	3	7	11.9999
LLCC	chr10:98981863-98982127(-)$1	264	20	24	11.9999
ggg2	chr19:893465-893690(+)$1	225	204	208	11.9999
::::	chr11:118886450-118886698(-)$1	248	3	7	11.9999
ffff	chr5:170818323-170818529(+)$1	206	22	26	11.9999
iiii	chr18:29709236-29709520(+)$1	284	169	173	11.9999
HH{E	chr14:52466324-52466590(+)$1	266	25	29	11.9999
:EEE	chr3:182639211-182639479(+)$1	268	35	39	11.9999
::::	chr11:118620809-118621063(-)$1	254	3	7	11.9999
::::	chr11:67052912-67053176(+)$1	264	45	49	11.9999
#ddd	chr2:170591676-170591931(+)$1	255	119	123	11.9999
HHHH	chr8:74893736-74894057(+)$1	321	69	73	11.9999
::GG	chr11:5364508-5364751(-)$1	243	84	88	11.9999
ffff	chr7:91829385-91829666(-)$1	281	21	25	11.9999
elll	chr16:18803236-18803451(-)$1	215	147	151	11.9999
J:::	chr22:35689706-35689961(+)$1	255	248	252	11.9999
gggg	chr12:12874898-12875168(+)$1	270	48	52	11.9999
nnnn	chr5:61681681-61681983(+)$1	302	76	80	11.9999
EEEE	chr17:30658610-30658907(-)$1	297	31	35	11.9999
gggg	chr5:133291341-133291640(-)$1	299	13	17	11.9999
gg$$	chr13:96444973-96445256(+)$1	283	118	122	11.9999
dJJJ	chr22:50281074-50281329(+)$1	255	49	53	11.9999
"""d	chr1:143896682-143896932(-)$1	250	48	52	11.9999
hhhh	chr1:151375730-151375997(-)$1	267	101	105	11.9999
EE:J	chr4:125585648-125585882(-)$1	234	6	10	11.9999
gg88	chr12:57451693-57451934(-)$1	241	103	107	11.9999
oeee	chr17:66526987-66527239(+)$1	252	21	25	11.9999
dd]b	chr10:120441382-120441626(-)$1	244	64	68	11.9999
====	chr10:857222-857481(-)$1	259	82	86	11.9999
LJJJ	chr13:46110302-46110559(+)$1	257	13	17	11.9999
eeee	chr12:88443012-88443244(+)$1	232	35	39	11.9999
:eee	chr12:121201521-121201768(-)$1	247	15	19	11.9999
FFFF	chr1:173760903-173761110(+)$1	207	30	34	11.9999
FFFF	chr19:46893625-46893855(+)$1	230	92	96	11.9999
qqdd	chr5:145665927-145666166(+)$1	239	62	66	11.9999
====	chr6:26523272-26523495(+)$1	223	86	90	11.9999
nggg	chr7:105731955-105732214(-)$1	259	38	42	11.9999
deee	chr17:80200466-80200714(-)$1	248	102	106	11.9999
hmmm	chrX:40459914-40460162(+)$1	248	33	37	11.9999
rrcc	chrX:135044582-135044864(-)$1	282	45	49	11.9999
HHHH	chr14:55819920-55820188(+)$1	268	69	73	11.9999
::::	chr9:133762861-133763149(+)$1	288	111	115	11.9999
::FF	chr5:61682542-61682787(+)$1	245	10	14	11.9999
ggg]	chr22:28247607-28247858(-)$1	251	133	137	11.9999
GGGG	chr10:88194936-88195192(-)$1	256	102	106	11.9999
DDbb	chr17:29704527-29704771(+)$1	244	41	45	11.9999
lldd	chr15:91425932-91426151(+)$1	219	57	61	11.9999
hh""	chr3:72423722-72423984(-)$1	262	6	10	11.9999
EEEE	chr13:20660149-20660386(+)$1	237	110	114	11.9999
dddd	chr19:811928-812167(+)$1	239	112	116	11.9999
:::e	chr6:7251972-7252205(+)$1	233	21	25	11.9999
JJJJ	chr20:48740692-48740916(-)$1	224	64	68	11.9999
::dd	chr17:73315766-73316013(-)$1	247	76	80	11.9999
dddd	chr12:57106468-57106687(-)$1	219	101	105	11.9999
====	chr5:145668436-145668684(+)$1	248	94	98	11.9999
mmee	chr11:2904697-2904940(-)$1	243	121	125	11.9999
oeee	chr4:53579999-53580247(+)$1	248	119	123	11.9999
ff[d	chr16:19563287-19563553(+)$1	266	106	110	11.9999
bb$$	chr2:172338078-172338366(+)$1	288	157	161	11.9999
====	chrX:44971299-44971587(+)$1	288	38	42	11.9999
::::	chr1:155305904-155306190(-)$1	286	145	149	11.9999
dd""	chr4:99801091-99801336(-)$1	245	6	10	11.9999

#DB
))))	chrX:65238678-65238888(+)$1	1	107	111	11.9999
...(	chrX:24004336-24004597(-)$1	1	156	160	11.9999
(...	chr20:21369967-21370261(+)$1	1	13	17	11.9999
))).	chr15:75890329-75890613(-)$1	1	177	181	11.9999
((.(	chr12:80168052-80168377(-)$1	1	118	122	11.9999
....	chr5:175810861-175811129(-)$1	1	195	199	11.9999
....	chr17:30327175-30327420(+)$1	1	141	145	11.9999
(.((	chr3:33908475-33908692(+)$1	1	24	28	11.9999
)).)	chr20:35869733-35870006(+)$1	1	106	110	11.9999
.(((	chr15:69071266-69071529(-)$1	1	48	52	11.9999
...(	chr12:121201607-121201894(-)$1	1	141	145	11.9999
((((	chr5:140041926-140042161(+)$1	1	74	78	11.9999
))))	chr7:151832650-151832929(-)$1	1	87	91	11.9999
.(((	chr1:39758407-39758615(+)$1	1	95	99	11.9999
..))	chr5:102537452-102537687(+)$1	1	19	23	11.9999
.(((	chr10:89513862-89514202(-)$1	1	10	14	11.9999
)).)	chr1:1477199-1477541(-)$1	1	134	138	11.9999
..))	chr16:24551723-24551975(+)$1	1	52	56	11.9999
(.(.	chr1:59247065-59247309(-)$1	1	16	20	11.9999
(.((	chr10:89312972-89313222(+)$1	1	77	81	11.9999
..))	chr20:45838134-45838412(-)$1	1	55	59	11.9999
.)))	chr9:123366591-123366865(-)$1	1	78	82	11.9999
))))	chr8:61102210-61102548(-)$1	1	88	92	11.9999
((..	chr4:48500277-48500523(-)$1	1	95	99	11.9999
(..(	chr9:34086339-34086559(-)$1	1	16	20	11.9999
....	chr1:229577416-229577692(-)$1	1	61	65	11.9999
))..	chrX:102930619-102930863(-)$1	1	171	175	11.9999
...(	chr11:4113020-4113296(+)$1	1	37	41	11.9999
((((	chr8:48875480-48875701(+)$1	1	3	7	11.9999
..((	chr10:98981863-98982127(-)$1	1	20	24	11.9999
))).	chr19:893465-893690(+)$1	1	204	208	11.9999
....	chr11:118886450-118886698(-)$1	1	3	7	11.9999
((((	chr5:170818323-170818529(+)$1	1	22	26	11.9999
))))	chr18:29709236-29709520(+)$1	1	169	173	11.9999
((.(	chr14:52466324-52466590(+)$1	1	25	29	11.9999
.(((	chr3:182639211-182639479(+)$1	1	35	39	11.9999
....	chr11:118620809-118621063(-)$1	1	3	7	11.9999
....	chr11:67052912-67053176(+)$1	1	45	49	11.9999
.(((	chr2:170591676-170591931(+)$1	1	119	123	11.9999
((((	chr8:74893736-74894057(+)$1	1	69	73	11.9999
..((	chr11:5364508-5364751(-)$1	1	84	88	11.9999
))))	chr7:91829385-91829666(-)$1	1	21	25	11.9999
(...	chr16:18803236-18803451(-)$1	1	147	151	11.9999
)...	chr22:35689706-35689961(+)$1	1	248	252	11.9999
((((	chr12:12874898-12875168(+)$1	1	48	52	11.9999
....	chr5:61681681-61681983(+)$1	1	76	80	11.9999
((((	chr17:30658610-30658907(-)$1	1	31	35	11.9999
))))	chr5:133291341-133291640(-)$1	1	13	17	11.9999
((..	chr13:96444973-96445256(+)$1	1	118	122	11.9999
)(((	chr22:50281074-50281329(+)$1	1	49	53	11.9999
...(	chr1:143896682-143896932(-)$1	1	48	52	11.9999
((((	chr1:151375730-151375997(-)$1	1	101	105	11.9999
((.(	chr4:125585648-125585882(-)$1	1	6	10	11.9999
))..	chr12:57451693-57451934(-)$1	1	103	107	11.9999
.)))	chr17:66526987-66527239(+)$1	1	21	25	11.9999
)).)	chr10:120441382-120441626(-)$1	1	64	68	11.9999
))))	chr10:857222-857481(-)$1	1	82	86	11.9999
.(((	chr13:46110302-46110559(+)$1	1	13	17	11.9999
))))	chr12:88443012-88443244(+)$1	1	35	39	11.9999
.(((	chr12:121201521-121201768(-)$1	1	15	19	11.9999
((((	chr1:173760903-173761110(+)$1	1	30	34	11.9999
((((	chr19:46893625-46893855(+)$1	1	92	96	11.9999
..))	chr5:145665927-145666166(+)$1	1	62	66	11.9999
))))	chr6:26523272-26523495(+)$1	1	86	90	11.9999
.)))	chr7:105731955-105732214(-)$1	1	38	42	11.9999
))))	chr17:80200466-80200714(-)$1	1	102	106	11.9999
(...	chrX:40459914-40460162(+)$1	1	33	37	11.9999
..))	chrX:135044582-135044864(-)$1	1	45	49	11.9999
((((	chr14:55819920-55820188(+)$1	1	69	73	11.9999
....	chr9:133762861-133763149(+)$1	1	111	115	11.9999
..((	chr5:61682542-61682787(+)$1	1	10	14	11.9999
))).	chr22:28247607-28247858(-)$1	1	133	137	11.9999
((((	chr10:88194936-88195192(-)$1	1	102	106	11.9999
((((	chr17:29704527-29704771(+)$1	1	41	45	11.9999
..))	chr15:91425932-91426151(+)$1	1	57	61	11.9999
((..	chr3:72423722-72423984(-)$1	1	6	10	11.9999
((((	chr13:20660149-20660386(+)$1	1	110	114	11.9999
))))	chr19:811928-812167(+)$1	1	112	116	11.9999
...(	chr6:7251972-7252205(+)$1	1	21	25	11.9999
((((	chr20:48740692-48740916(-)$1	1	64	68	11.9999
..((	chr17:73315766-73316013(-)$1	1	76	80	11.9999
((((	chr12:57106468-57106687(-)$1	1	101	105	11.9999
))))	chr5:145668436-145668684(+)$1	1	94	98	11.9999
..))	chr11:2904697-2904940(-)$1	1	121	125	11.9999
.)))	chr4:53579999-53580247(+)$1	1	119	123	11.9999
((.(	chr16:19563287-19563553(+)$1	1	106	110	11.9999
((..	chr2:172338078-172338366(+)$1	1	157	161	11.9999
))))	chrX:44971299-44971587(+)$1	1	38	42	11.9999
....	chr1:155305904-155306190(-)$1	1	145	149	11.9999
((..	chr4:99801091-99801336(-)$1	1	6	10	11.9999

#PSSM
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	
U : 0.94	u : 0.05	

#score	1079.9999999999995
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_CDS_m2_run2.nuc.txt

#NT
CUU	chr7:158719582-158719826(+)$1	244	19	22	9.0000
CUU	chr16:2489611-2489887(+)$1	276	67	70	9.0000
CUU	chr16:2487968-2488239(+)$1	271	80	83	9.0000
CUU	chr12:46591718-46591950(-)$1	232	76	79	9.0000
CUU	chr13:79940861-79941107(-)$1	246	27	30	9.0000
CUU	chr12:98994845-98995147(+)$1	302	87	90	9.0000
CUU	chr3:15270384-15270630(+)$1	246	16	19	9.0000
CUU	chr11:9598612-9598844(+)$1	232	28	31	9.0000
CUU	chr12:49496180-49496425(-)$1	245	49	52	9.0000
CUU	chr6:49583175-49583461(-)$1	286	12	15	9.0000
CUU	chr1:145440793-145441023(+)$1	230	13	16	9.0000
CUU	chr20:36365735-36365985(+)$1	250	33	36	9.0000
CUU	chr9:135930346-135930609(+)$1	263	114	117	9.0000
CUU	chr9:35720391-35720606(-)$1	215	1	4	9.0000
CUU	chr1:145441070-145441331(+)$1	261	21	24	9.0000
CUU	chr9:139745057-139745387(+)$1	330	46	49	9.0000
CUU	chr17:38325458-38325708(+)$1	250	32	35	9.0000
CUU	chr6:32942088-32942398(+)$1	310	21	24	9.0000
CUU	chr1:93580444-93580671(+)$1	227	37	40	9.0000
CUU	chr9:135781380-135781654(-)$1	274	12	15	9.0000
CUU	chr20:60889515-60889736(-)$1	221	15	18	9.0000
CUU	chr16:74542693-74542936(-)$1	243	5	8	9.0000
CUU	chr1:11850809-11851095(-)$1	286	28	31	9.0000
cuu	chr15:43351225-43351499(-)$1	274	0	3	9.0000
CUU	chr16:68362856-68363120(+)$1	264	13	16	9.0000
CUU	chr11:68334380-68334609(+)$1	229	34	37	9.0000
CUU	chr15:43328637-43328885(-)$1	248	3	6	9.0000
CUU	chr19:5933322-5933605(-)$1	283	49	52	9.0000
CUU	chr15:74708923-74709176(-)$1	253	82	85	9.0000
CUU	chr3:128348846-128349091(-)$1	245	18	21	9.0000
CUU	chr12:7285445-7285683(+)$1	238	2	5	9.0000
CUU	chr19:39908369-39908647(+)$1	278	15	18	9.0000
CUU	chr16:4924108-4924347(+)$1	239	61	64	9.0000
CUU	chr2:38545630-38545881(-)$1	251	1	4	9.0000
CUU	chr2:86310107-86310395(-)$1	288	17	20	9.0000
CUU	chr10:6154191-6154467(+)$1	276	17	20	9.0000
CUU	chr17:38572631-38572866(-)$1	235	16	19	9.0000
CUU	chr21:46893792-46894071(+)$1	279	202	205	9.0000
CUU	chr11:46430126-46430379(-)$1	253	2	5	9.0000
cuu	chr5:38966680-38966933(-)$1	253	6	9	9.0000
CUU	chr16:53504174-53504423(+)$1	249	76	79	9.0000
CUU	chr2:182757273-182757564(+)$1	291	251	254	9.0000
CUU	chr11:95521562-95521846(-)$1	284	28	31	9.0000
CUU	chr13:114792800-114793029(-)$1	229	3	6	9.0000
CUU	chr11:117117500-117117763(+)$1	263	144	147	9.0000
CUU	chr14:35871936-35872174(-)$1	238	8	11	9.0000
cuu	chr19:49378093-49378351(+)$1	258	117	120	9.0000
CUU	chr2:74595128-74595400(-)$1	272	23	26	9.0000
CUU	chr6:43604001-43604262(+)$1	261	16	19	9.0000
CUU	chr20:39980577-39980844(+)$1	267	10	13	9.0000
CUU	chrX:48783192-48783430(-)$1	238	1	4	9.0000
CUU	chr22:26177673-26177901(+)$1	228	12	15	9.0000
CUU	chr4:39878633-39878862(-)$1	229	13	16	9.0000
CUU	chr12:124092097-124092369(+)$1	272	20	23	9.0000
CUU	chr21:30410546-30410786(+)$1	240	41	44	9.0000
CUU	chr11:71724620-71724921(-)$1	301	59	62	9.0000
CUU	chr5:126869197-126869470(+)$1	273	109	112	9.0000
CUU	chr8:124799885-124800146(+)$1	261	7	10	9.0000
CUU	chr6:74189742-74189997(+)$1	255	4	7	9.0000
CUU	chr1:206610193-206610507(+)$1	314	16	19	9.0000
CUU	chr11:108593855-108594159(+)$1	304	21	24	9.0000
CUU	chr1:19653013-19653293(+)$1	280	13	16	9.0000
CUU	chr3:49412858-49413118(-)$1	260	52	55	9.0000
CUU	chr1:1233924-1234196(-)$1	272	139	142	9.0000
CUU	chr1:182850518-182850796(+)$1	278	7	10	9.0000
CUU	chr13:46553998-46554243(-)$1	245	94	97	9.0000
CUU	chrX:152936683-152936954(-)$1	271	35	38	9.0000
CUU	chr6:36569372-36569587(+)$1	215	103	106	9.0000
CUU	chr7:92079905-92080194(+)$1	289	17	20	9.0000
CUU	chr6:30552070-30552303(+)$1	233	72	75	9.0000
CUU	chr17:43009998-43010247(-)$1	249	21	24	9.0000
CUU	chr12:6860678-6860952(-)$1	274	9	12	9.0000
CUU	chr10:6138878-6139176(+)$1	298	39	42	9.0000
CUU	chr12:124017855-124018137(-)$1	282	204	207	9.0000
CUU	chr10:75551501-75551761(+)$1	260	10	13	9.0000
CUU	chr2:171804745-171804994(+)$1	249	57	60	9.0000
CUU	chr21:47981548-47981822(+)$1	274	51	54	9.0000
CUU	chr15:74917164-74917464(+)$1	300	63	66	9.0000
CUU	chr11:125483878-125484125(+)$1	247	12	15	9.0000
CUU	chr2:9633806-9634067(-)$1	261	23	26	9.0000
CUU	chr12:54805619-54805851(-)$1	232	34	37	9.0000
CUU	chr15:91485993-91486314(+)$1	321	54	57	9.0000
CUU	chr7:104782443-104782712(-)$1	269	130	133	9.0000
CUU	chr19:4844666-4844946(-)$1	280	6	9	9.0000
CUU	chr15:44941064-44941306(-)$1	242	79	82	9.0000
CUU	chr4:13610053-13610301(-)$1	248	0	3	9.0000
CUU	chr12:57922616-57922868(+)$1	252	16	19	9.0000
CUU	chr20:34142690-34142947(+)$1	257	93	96	9.0000
CUU	chr8:145134709-145134998(+)$1	289	6	9	9.0000
CUU	chr6:52945664-52945998(+)$1	334	2	5	9.0000
CUU	chr18:71928023-71928313(-)$1	290	85	88	9.0000
CUU	chr18:13740051-13740332(+)$1	281	2	5	9.0000
CUU	chr7:72721624-72721877(-)$1	253	5	8	9.0000
CUU	chr17:40970544-40970795(-)$1	251	90	93	9.0000
CUU	chr6:158504929-158505197(+)$1	268	52	55	9.0000
CUU	chr16:67763794-67764103(-)$1	309	7	10	9.0000
CUU	chr19:2226446-2226673(+)$1	227	24	27	9.0000
CUU	chr22:40798053-40798257(+)$1	204	25	28	9.0000
cuu	chr16:88719668-88719926(-)$1	258	21	24	9.0000

#otherMatches

#Struct PSSM
CCC	chr5:178045577-178045902(-)$1	325	18	21	9.0000
eee	chr7:158719582-158719826(+)$1	244	19	22	9.0000
HH:	chr16:2489611-2489887(+)$1	276	67	70	9.0000
iii	chr16:2487968-2488239(+)$1	271	80	83	9.0000
mff	chr12:46591718-46591950(-)$1	232	76	79	9.0000
ddd	chr13:79940861-79941107(-)$1	246	27	30	9.0000
eee	chr12:98994845-98995147(+)$1	302	87	90	9.0000
LLL	chr3:15270384-15270630(+)$1	246	16	19	9.0000
III	chr11:9598612-9598844(+)$1	232	28	31	9.0000
CC{	chr12:49496180-49496425(-)$1	245	49	52	9.0000
ddl	chr6:49583175-49583461(-)$1	286	12	15	9.0000
^^^	chr1:145440793-145441023(+)$1	230	13	16	9.0000
fff	chr20:36365735-36365985(+)$1	250	33	36	9.0000
b66	chr9:135930346-135930609(+)$1	263	114	117	9.0000
HHH	chr9:35720391-35720606(-)$1	215	1	4	9.0000
aee	chr1:145441070-145441331(+)$1	261	21	24	9.0000
e::	chr9:139745057-139745387(+)$1	330	46	49	9.0000
ggg	chr17:38325458-38325708(+)$1	250	32	35	9.0000
nnn	chr6:32942088-32942398(+)$1	310	21	24	9.0000
sss	chr1:93580444-93580671(+)$1	227	37	40	9.0000
eee	chr9:135781380-135781654(-)$1	274	12	15	9.0000
LLL	chr20:60889515-60889736(-)$1	221	15	18	9.0000
:::	chr16:74542693-74542936(-)$1	243	5	8	9.0000
JJJ	chr1:11850809-11851095(-)$1	286	28	31	9.0000
EEE	chr15:43351225-43351499(-)$1	274	0	3	9.0000
::D	chr16:68362856-68363120(+)$1	264	13	16	9.0000
ddd	chr11:68334380-68334609(+)$1	229	34	37	9.0000
:GG	chr15:43328637-43328885(-)$1	248	3	6	9.0000
FF:	chr19:5933322-5933605(-)$1	283	49	52	9.0000
55=	chr15:74708923-74709176(-)$1	253	82	85	9.0000
hhh	chr3:128348846-128349091(-)$1	245	18	21	9.0000
:::	chr12:7285445-7285683(+)$1	238	2	5	9.0000
Ghh	chr19:39908369-39908647(+)$1	278	15	18	9.0000
#ff	chr16:4924108-4924347(+)$1	239	61	64	9.0000
::E	chr2:38545630-38545881(-)$1	251	1	4	9.0000
{CC	chr2:86310107-86310395(-)$1	288	17	20	9.0000
eee	chr10:6154191-6154467(+)$1	276	17	20	9.0000
OOD	chr17:38572631-38572866(-)$1	235	16	19	9.0000
:::	chr21:46893792-46894071(+)$1	279	202	205	9.0000
:::	chr11:46430126-46430379(-)$1	253	2	5	9.0000
FFF	chr5:38966680-38966933(-)$1	253	6	9	9.0000
dd:	chr16:53504174-53504423(+)$1	249	76	79	9.0000
fff	chr2:182757273-182757564(+)$1	291	251	254	9.0000
eee	chr11:95521562-95521846(-)$1	284	28	31	9.0000
III	chr13:114792800-114793029(-)$1	229	3	6	9.0000
fff	chr11:117117500-117117763(+)$1	263	144	147	9.0000
TTT	chr14:35871936-35872174(-)$1	238	8	11	9.0000
g]f	chr19:49378093-49378351(+)$1	258	117	120	9.0000
eee	chr2:74595128-74595400(-)$1	272	23	26	9.0000
ooo	chr6:43604001-43604262(+)$1	261	16	19	9.0000
LLL	chr20:39980577-39980844(+)$1	267	10	13	9.0000
FFF	chrX:48783192-48783430(-)$1	238	1	4	9.0000
iii	chr22:26177673-26177901(+)$1	228	12	15	9.0000
{EE	chr4:39878633-39878862(-)$1	229	13	16	9.0000
d::	chr12:124092097-124092369(+)$1	272	20	23	9.0000
ggg	chr21:30410546-30410786(+)$1	240	41	44	9.0000
ddd	chr11:71724620-71724921(-)$1	301	59	62	9.0000
ccm	chr5:126869197-126869470(+)$1	273	109	112	9.0000
:::	chr8:124799885-124800146(+)$1	261	7	10	9.0000
III	chr6:74189742-74189997(+)$1	255	4	7	9.0000
qqq	chr1:206610193-206610507(+)$1	314	16	19	9.0000
ddd	chr11:108593855-108594159(+)$1	304	21	24	9.0000
qqq	chr1:19653013-19653293(+)$1	280	13	16	9.0000
zzz	chr3:49412858-49413118(-)$1	260	52	55	9.0000
fff	chr1:1233924-1234196(-)$1	272	139	142	9.0000
d##	chr1:182850518-182850796(+)$1	278	7	10	9.0000
ccc	chr13:46553998-46554243(-)$1	245	94	97	9.0000
mmm	chrX:152936683-152936954(-)$1	271	35	38	9.0000
B:D	chr6:36569372-36569587(+)$1	215	103	106	9.0000
CC{	chr7:92079905-92080194(+)$1	289	17	20	9.0000
&==	chr6:30552070-30552303(+)$1	233	72	75	9.0000
EEK	chr17:43009998-43010247(-)$1	249	21	24	9.0000
PPP	chr12:6860678-6860952(-)$1	274	9	12	9.0000
hhh	chr10:6138878-6139176(+)$1	298	39	42	9.0000
amm	chr12:124017855-124018137(-)$1	282	204	207	9.0000
doo	chr10:75551501-75551761(+)$1	260	10	13	9.0000
fff	chr2:171804745-171804994(+)$1	249	57	60	9.0000
EEe	chr21:47981548-47981822(+)$1	274	51	54	9.0000
JJJ	chr15:74917164-74917464(+)$1	300	63	66	9.0000
CCC	chr11:125483878-125484125(+)$1	247	12	15	9.0000
CQQ	chr2:9633806-9634067(-)$1	261	23	26	9.0000
:FF	chr12:54805619-54805851(-)$1	232	34	37	9.0000
3dd	chr15:91485993-91486314(+)$1	321	54	57	9.0000
777	chr7:104782443-104782712(-)$1	269	130	133	9.0000
:::	chr19:4844666-4844946(-)$1	280	6	9	9.0000
d::	chr15:44941064-44941306(-)$1	242	79	82	9.0000
:FF	chr4:13610053-13610301(-)$1	248	0	3	9.0000
ooo	chr12:57922616-57922868(+)$1	252	16	19	9.0000
hhh	chr20:34142690-34142947(+)$1	257	93	96	9.0000
f[d	chr8:145134709-145134998(+)$1	289	6	9	9.0000
:::	chr6:52945664-52945998(+)$1	334	2	5	9.0000
nnn	chr18:71928023-71928313(-)$1	290	85	88	9.0000
FFF	chr18:13740051-13740332(+)$1	281	2	5	9.0000
FFF	chr7:72721624-72721877(-)$1	253	5	8	9.0000
eee	chr17:40970544-40970795(-)$1	251	90	93	9.0000
:::	chr6:158504929-158505197(+)$1	268	52	55	9.0000
&&&	chr16:67763794-67764103(-)$1	309	7	10	9.0000
:JJ	chr19:2226446-2226673(+)$1	227	24	27	9.0000
bss	chr22:40798053-40798257(+)$1	204	25	28	9.0000
ppp	chr16:88719668-88719926(-)$1	258	21	24	9.0000

#DB
(((	chr5:178045577-178045902(-)$1	1	18	21	9.0000
(((	chr7:158719582-158719826(+)$1	1	19	22	9.0000
((.	chr16:2489611-2489887(+)$1	1	67	70	9.0000
)))	chr16:2487968-2488239(+)$1	1	80	83	9.0000
.))	chr12:46591718-46591950(-)$1	1	76	79	9.0000
(((	chr13:79940861-79941107(-)$1	1	27	30	9.0000
(((	chr12:98994845-98995147(+)$1	1	87	90	9.0000
...	chr3:15270384-15270630(+)$1	1	16	19	9.0000
(((	chr11:9598612-9598844(+)$1	1	28	31	9.0000
((.	chr12:49496180-49496425(-)$1	1	49	52	9.0000
((.	chr6:49583175-49583461(-)$1	1	12	15	9.0000
...	chr1:145440793-145441023(+)$1	1	13	16	9.0000
(((	chr20:36365735-36365985(+)$1	1	33	36	9.0000
)..	chr9:135930346-135930609(+)$1	1	114	117	9.0000
(((	chr9:35720391-35720606(-)$1	1	1	4	9.0000
(((	chr1:145441070-145441331(+)$1	1	21	24	9.0000
)..	chr9:139745057-139745387(+)$1	1	46	49	9.0000
(((	chr17:38325458-38325708(+)$1	1	32	35	9.0000
...	chr6:32942088-32942398(+)$1	1	21	24	9.0000
...	chr1:93580444-93580671(+)$1	1	37	40	9.0000
(((	chr9:135781380-135781654(-)$1	1	12	15	9.0000
...	chr20:60889515-60889736(-)$1	1	15	18	9.0000
...	chr16:74542693-74542936(-)$1	1	5	8	9.0000
(((	chr1:11850809-11851095(-)$1	1	28	31	9.0000
(((	chr15:43351225-43351499(-)$1	1	0	3	9.0000
..(	chr16:68362856-68363120(+)$1	1	13	16	9.0000
)))	chr11:68334380-68334609(+)$1	1	34	37	9.0000
.((	chr15:43328637-43328885(-)$1	1	3	6	9.0000
((.	chr19:5933322-5933605(-)$1	1	49	52	9.0000
..)	chr15:74708923-74709176(-)$1	1	82	85	9.0000
(((	chr3:128348846-128349091(-)$1	1	18	21	9.0000
...	chr12:7285445-7285683(+)$1	1	2	5	9.0000
(((	chr19:39908369-39908647(+)$1	1	15	18	9.0000
.((	chr16:4924108-4924347(+)$1	1	61	64	9.0000
..(	chr2:38545630-38545881(-)$1	1	1	4	9.0000
.((	chr2:86310107-86310395(-)$1	1	17	20	9.0000
)))	chr10:6154191-6154467(+)$1	1	17	20	9.0000
..(	chr17:38572631-38572866(-)$1	1	16	19	9.0000
...	chr21:46893792-46894071(+)$1	1	202	205	9.0000
...	chr11:46430126-46430379(-)$1	1	2	5	9.0000
(((	chr5:38966680-38966933(-)$1	1	6	9	9.0000
)).	chr16:53504174-53504423(+)$1	1	76	79	9.0000
(((	chr2:182757273-182757564(+)$1	1	251	254	9.0000
(((	chr11:95521562-95521846(-)$1	1	28	31	9.0000
(((	chr13:114792800-114793029(-)$1	1	3	6	9.0000
)))	chr11:117117500-117117763(+)$1	1	144	147	9.0000
...	chr14:35871936-35872174(-)$1	1	8	11	9.0000
).)	chr19:49378093-49378351(+)$1	1	117	120	9.0000
)))	chr2:74595128-74595400(-)$1	1	23	26	9.0000
...	chr6:43604001-43604262(+)$1	1	16	19	9.0000
...	chr20:39980577-39980844(+)$1	1	10	13	9.0000
(((	chrX:48783192-48783430(-)$1	1	1	4	9.0000
(((	chr22:26177673-26177901(+)$1	1	12	15	9.0000
.((	chr4:39878633-39878862(-)$1	1	13	16	9.0000
)..	chr12:124092097-124092369(+)$1	1	20	23	9.0000
(((	chr21:30410546-30410786(+)$1	1	41	44	9.0000
)))	chr11:71724620-71724921(-)$1	1	59	62	9.0000
((.	chr5:126869197-126869470(+)$1	1	109	112	9.0000
...	chr8:124799885-124800146(+)$1	1	7	10	9.0000
(((	chr6:74189742-74189997(+)$1	1	4	7	9.0000
...	chr1:206610193-206610507(+)$1	1	16	19	9.0000
(((	chr11:108593855-108594159(+)$1	1	21	24	9.0000
...	chr1:19653013-19653293(+)$1	1	13	16	9.0000
...	chr3:49412858-49413118(-)$1	1	52	55	9.0000
(((	chr1:1233924-1234196(-)$1	1	139	142	9.0000
(..	chr1:182850518-182850796(+)$1	1	7	10	9.0000
(((	chr13:46553998-46554243(-)$1	1	94	97	9.0000
...	chrX:152936683-152936954(-)$1	1	35	38	9.0000
).(	chr6:36569372-36569587(+)$1	1	103	106	9.0000
((.	chr7:92079905-92080194(+)$1	1	17	20	9.0000
.((	chr6:30552070-30552303(+)$1	1	72	75	9.0000
((.	chr17:43009998-43010247(-)$1	1	21	24	9.0000
...	chr12:6860678-6860952(-)$1	1	9	12	9.0000
)))	chr10:6138878-6139176(+)$1	1	39	42	9.0000
(..	chr12:124017855-124018137(-)$1	1	204	207	9.0000
(..	chr10:75551501-75551761(+)$1	1	10	13	9.0000
(((	chr2:171804745-171804994(+)$1	1	57	60	9.0000
(((	chr21:47981548-47981822(+)$1	1	51	54	9.0000
(((	chr15:74917164-74917464(+)$1	1	63	66	9.0000
(((	chr11:125483878-125484125(+)$1	1	12	15	9.0000
(..	chr2:9633806-9634067(-)$1	1	23	26	9.0000
.((	chr12:54805619-54805851(-)$1	1	34	37	9.0000
.))	chr15:91485993-91486314(+)$1	1	54	57	9.0000
...	chr7:104782443-104782712(-)$1	1	130	133	9.0000
...	chr19:4844666-4844946(-)$1	1	6	9	9.0000
)..	chr15:44941064-44941306(-)$1	1	79	82	9.0000
.((	chr4:13610053-13610301(-)$1	1	0	3	9.0000
...	chr12:57922616-57922868(+)$1	1	16	19	9.0000
)))	chr20:34142690-34142947(+)$1	1	93	96	9.0000
(.(	chr8:145134709-145134998(+)$1	1	6	9	9.0000
...	chr6:52945664-52945998(+)$1	1	2	5	9.0000
...	chr18:71928023-71928313(-)$1	1	85	88	9.0000
(((	chr18:13740051-13740332(+)$1	1	2	5	9.0000
(((	chr7:72721624-72721877(-)$1	1	5	8	9.0000
)))	chr17:40970544-40970795(-)$1	1	90	93	9.0000
...	chr6:158504929-158505197(+)$1	1	52	55	9.0000
...	chr16:67763794-67764103(-)$1	1	7	10	9.0000
.((	chr19:2226446-2226673(+)$1	1	24	27	9.0000
(..	chr22:40798053-40798257(+)$1	1	25	28	9.0000
...	chr16:88719668-88719926(-)$1	1	21	24	9.0000

#PSSM
C : 0.96	c : 0.04	
U : 0.96	u : 0.04	
U : 0.96	u : 0.04	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_CDS_m3_run2.nuc.txt

#NT
gccgccgccgcc	chr2:43451655-43451880(-)$1	225	96	108	16.2000
GCAGCUGCAGGC	chr18:56063313-56063645(+)$1	332	282	294	15.2000
GGCGUUGCUGCC	chr19:18499395-18499668(+)$1	273	45	57	13.1000
ACUGCUGCUCCC	chr20:61537053-61537295(-)$1	242	23	35	16.2000
GCUGCGGGUGCC	chr16:22337050-22337308(+)$1	258	137	149	16.5000
GCUGCUGCUGCC	chr2:208631716-208632021(-)$1	305	164	176	23.4000
GUGGCUGCCGCC	chr14:24906386-24906648(+)$1	262	120	132	15.4000
GGUUCGGCUGCC	chr14:23450780-23451005(-)$1	225	191	203	13.9000
GCUGCUGCAGGG	chr1:16474863-16475114(-)$1	251	27	39	14.5000
GUUGCUGCAGCC	chr12:57039594-57039840(-)$1	246	57	69	19.0000
UCUGCUGCUGAC	chr17:72436194-72436481(+)$1	287	200	212	15.8000
GUUGCAGCUCCC	chr16:23690322-23690587(+)$1	265	3	15	14.2000
GCCACUGCUGCC	chr17:36873078-36873331(+)$1	253	26	38	16.4000
ACUGGUGCUGCC	chr19:50099958-50100190(+)$1	232	6	18	15.8000
ACAGCGGCAGCC	chr8:128750933-128751172(+)$1	239	47	59	13.7000
GCUGUCGCCGCC	chr20:62679748-62680016(-)$1	268	230	242	14.6000
CCUGCUGCAGUC	chr14:24900875-24901104(+)$1	229	89	101	14.6000
GCUCCGGCAGCC	chr2:43451482-43451724(-)$1	242	175	187	15.7000
GCUGCUGCAGCC	chr7:150934916-150935149(+)$1	233	29	41	22.1000
GCCGCAGCUGCC	chr20:306926-307180(+)$1	254	58	70	18.5000
CCUCCUGCAGCC	chr3:32932022-32932288(+)$1	266	20	32	14.9000
ACUGCUGCUGCG	chr1:26189845-26190098(-)$1	253	19	31	16.7000
GCUGCCCCUGCC	chr11:46726473-46726724(+)$1	251	163	175	16.4000
GUAGCUGCGGCC	chr16:87367390-87367669(-)$1	279	71	83	15.3000
UCGGCUUCUGCC	chr2:43452146-43452437(-)$1	291	102	114	12.4000
GUUGCUGCUGCU	chr2:208633213-208633430(-)$1	217	2	14	16.6000
GCUGCUGCUGCC	chr12:76425152-76425401(-)$1	249	227	239	23.4000
GCUGCAGCUGCA	chr1:27320577-27320815(+)$1	238	80	92	17.9000
GAGGCUGCUACC	chr17:56434899-56435146(-)$1	247	133	145	12.5000
UCUGCAGCGGCC	chr16:30543682-30543937(-)$1	255	181	193	15.7000
GCUCCGCCUGCC	chr7:1027997-1028240(+)$1	243	121	133	12.5000
AGUgccgcugcc	chr14:69256491-69256753(-)$1	262	111	123	14.6000
CCUUCUGCCGCC	chr3:32859626-32859925(+)$1	299	136	148	14.3000
GCAGCUGCCCCC	chr16:9185872-9186097(+)$1	225	136	148	14.7000
GCUGCUGGUGCU	chr3:196675185-196675459(-)$1	274	252	264	15.2000
gccgcagcugca	chr7:148920803-148921057(+)$1	254	173	185	15.1000
GGUUCGGCUGCC	chr14:23450699-23450937(-)$1	238	123	135	13.9000
GCUGCUGUAGCA	chr14:21702081-21702328(-)$1	247	168	180	14.1000
GCUGCAGCGGCA	chr2:171573695-171573918(+)$1	223	47	59	15.7000
CCCGCCGCCGCC	chr10:88854235-88854481(-)$1	246	63	75	13.0000
GCUGCUGCAUCC	chr6:11190229-11190462(-)$1	233	121	133	17.8000
GUUGCAGCUGAC	chr14:23502692-23502948(-)$1	256	83	95	14.0000
GGUGGUGCAGCC	chr4:38690357-38690669(+)$1	312	234	246	14.6000
gcugcugcugcg	chr2:171573341-171573554(+)$1	213	57	69	19.9000
CCAGCUGCUGCA	chr5:172195869-172196111(-)$1	242	151	163	14.0000
GCAGCUGCGCCC	chr2:3392139-3392406(+)$1	267	62	74	14.4000
GCGGCAGCAGCC	chr19:39899166-39899405(+)$1	239	51	63	17.0000
GCUGCAGCAGCG	chr7:150934971-150935216(+)$1	245	115	127	16.5000
GGUGCUGCUGGC	chr20:45353698-45353954(+)$1	256	225	237	16.2000

#otherMatches

#Struct PSSM
gammmma]gggg	chrX:49126679-49126939(+)$1	260	72	84	21.5000
bb[bb[bb[bbq	chr2:43451655-43451880(-)$1	225	96	108	16.2000
JJJJJJJJdddd	chr18:56063313-56063645(+)$1	332	282	294	15.2000
FFFF{CCC{BBE	chr19:18499395-18499668(+)$1	273	45	57	13.1000
occc22cccddd	chr20:61537053-61537295(-)$1	242	23	35	16.2000
cccffffff[cc	chr16:22337050-22337308(+)$1	258	137	149	16.5000
eeeee[eeeeen	chr2:208631716-208632021(-)$1	305	164	176	23.4000
cffffff!!bbp	chr14:24906386-24906648(+)$1	262	120	132	15.4000
e"""eeeeeqqq	chr14:23450780-23451005(-)$1	225	191	203	13.9000
bbmmmmbb]ddd	chr1:16474863-16475114(-)$1	251	27	39	14.5000
hlllhhhhhhhh	chr12:57039594-57039840(-)$1	246	57	69	19.0000
ffff[bb[eeee	chr17:72436194-72436481(+)$1	287	200	212	15.8000
fff[appppppp	chr16:23690322-23690587(+)$1	265	3	15	14.2000
CCC{CCC{EEEE	chr17:36873078-36873331(+)$1	253	26	38	16.4000
:::BB{DDDDLL	chr19:50099958-50100190(+)$1	232	6	18	15.8000
pppcccffffff	chr8:128750933-128751172(+)$1	239	47	59	13.7000
bb::FFFFFFYY	chr20:62679748-62680016(-)$1	268	230	242	14.6000
HHH{BB{BBeee	chr14:24900875-24901104(+)$1	229	89	101	14.6000
e####eeeee[a	chr2:43451482-43451724(-)$1	242	175	187	15.7000
dddIIIIIIIII	chr7:150934916-150935149(+)$1	233	29	41	22.1000
ffff22ffffff	chr20:306926-307180(+)$1	254	58	70	18.5000
ooooeeeee::G	chr3:32932022-32932288(+)$1	266	20	32	14.9000
gggg!!a!!a[b	chr1:26189845-26190098(-)$1	253	19	31	16.7000
ggggg::::ccc	chr11:46726473-46726724(+)$1	251	163	175	16.4000
:::eeeeeoooo	chr16:87367390-87367669(-)$1	279	71	83	15.3000
::cccmmmmccc	chr2:43452146-43452437(-)$1	291	102	114	12.4000
EEEEdddd[ccc	chr2:208633213-208633430(-)$1	217	2	14	16.6000
ddddbb22ffff	chr12:76425152-76425401(-)$1	249	227	239	23.4000
ddpppppppddd	chr1:27320577-27320815(+)$1	238	80	92	17.9000
DDDDcccmmmmc	chr17:56434899-56435146(-)$1	247	133	145	12.5000
ffff]cccJJJJ	chr16:30543682-30543937(-)$1	255	181	193	15.7000
eeedddd!!ggg	chr7:1027997-1028240(+)$1	243	121	133	12.5000
qqqcccbb[bbm	chr14:69256491-69256753(-)$1	262	111	123	14.6000
dd!!a[dddd##	chr3:32859626-32859925(+)$1	299	136	148	14.3000
bb[ffffffbbb	chr16:9185872-9186097(+)$1	225	136	148	14.7000
FFFFF}CCC}EE	chr3:196675185-196675459(-)$1	274	252	264	15.2000
bb[a!!eeeeem	chr7:148920803-148921057(+)$1	254	173	185	15.1000
pppppppdddd2	chr14:23450699-23450937(-)$1	238	123	135	13.9000
a]ggggggg444	chr14:21702081-21702328(-)$1	247	168	180	14.1000
cffffffooooo	chr2:171573695-171573918(+)$1	223	47	59	15.7000
EEEiiiiiiiii	chr10:88854235-88854481(-)$1	246	63	75	13.0000
IIIIIIIII:ee	chr6:11190229-11190462(-)$1	233	121	133	17.8000
sssssssshhhh	chr14:23502692-23502948(-)$1	256	83	95	14.0000
hhhhh]dddd33	chr4:38690357-38690669(+)$1	312	234	246	14.6000
eeeeemmmmeee	chr2:171573341-171573554(+)$1	213	57	69	19.9000
ee333bb]a]hh	chr5:172195869-172196111(-)$1	242	151	163	14.0000
CC:bb[eeeeel	chr2:3392139-3392406(+)$1	267	62	74	14.4000
oocccBBKKCCC	chr19:39899166-39899405(+)$1	239	51	63	17.0000
ddd:IIIIIIII	chr7:150934971-150935216(+)$1	245	115	127	16.5000
bb]ccc]bbggg	chr20:45353698-45353954(+)$1	256	225	237	16.2000

#DB
((....).))))	chrX:49126679-49126939(+)$1	1	72	84	21.5000
((.((.((.((.	chr2:43451655-43451880(-)$1	1	96	108	16.2000
))))))))((((	chr18:56063313-56063645(+)$1	1	282	294	15.2000
((((.(((.(((	chr19:18499395-18499668(+)$1	1	45	57	13.1000
.)))..)))(((	chr20:61537053-61537295(-)$1	1	23	35	16.2000
)))((((((.((	chr16:22337050-22337308(+)$1	1	137	149	16.5000
(((((.(((((.	chr2:208631716-208632021(-)$1	1	164	176	23.4000
(((((((..((.	chr14:24906386-24906648(+)$1	1	120	132	15.4000
(...(((((...	chr14:23450780-23451005(-)$1	1	191	203	13.9000
((....)).)))	chr1:16474863-16475114(-)$1	1	27	39	14.5000
(...))))))))	chr12:57039594-57039840(-)$1	1	57	69	19.0000
((((.((.((((	chr17:72436194-72436481(+)$1	1	200	212	15.8000
(((.(.......	chr16:23690322-23690587(+)$1	1	3	15	14.2000
(((.(((.((((	chr17:36873078-36873331(+)$1	1	26	38	16.4000
...((.((((..	chr19:50099958-50100190(+)$1	1	6	18	15.8000
...)))))))))	chr8:128750933-128751172(+)$1	1	47	59	13.7000
))..))))))..	chr20:62679748-62680016(-)$1	1	230	242	14.6000
(((.((.(((((	chr14:24900875-24901104(+)$1	1	89	101	14.6000
(....(((((.(	chr2:43451482-43451724(-)$1	1	175	187	15.7000
)))(((((((((	chr7:150934916-150935149(+)$1	1	29	41	22.1000
))))..))))))	chr20:306926-307180(+)$1	1	58	70	18.5000
....)))))..(	chr3:32932022-32932288(+)$1	1	20	32	14.9000
((((..(..(.(	chr1:26189845-26190098(-)$1	1	19	31	16.7000
)))))....(((	chr11:46726473-46726724(+)$1	1	163	175	16.4000
...(((((....	chr16:87367390-87367669(-)$1	1	71	83	15.3000
..(((....)))	chr2:43452146-43452437(-)$1	1	102	114	12.4000
((((((((.(((	chr2:208633213-208633430(-)$1	1	2	14	16.6000
))))))..))))	chr12:76425152-76425401(-)$1	1	227	239	23.4000
((.......)))	chr1:27320577-27320815(+)$1	1	80	92	17.9000
(((((((....)	chr17:56434899-56435146(-)$1	1	133	145	12.5000
)))).)))))))	chr16:30543682-30543937(-)$1	1	181	193	15.7000
(((((((..(((	chr7:1027997-1028240(+)$1	1	121	133	12.5000
...)))((.((.	chr14:69256491-69256753(-)$1	1	111	123	14.6000
((..(.((((..	chr3:32859626-32859925(+)$1	1	136	148	14.3000
((.(((((((((	chr16:9185872-9186097(+)$1	1	136	148	14.7000
))))).))).))	chr3:196675185-196675459(-)$1	1	252	264	15.2000
((.(..(((((.	chr7:148920803-148921057(+)$1	1	173	185	15.1000
.......)))).	chr14:23450699-23450937(-)$1	1	123	135	13.9000
).)))))))...	chr14:21702081-21702328(-)$1	1	168	180	14.1000
(((((((.....	chr2:171573695-171573918(+)$1	1	47	59	15.7000
((((((((((((	chr10:88854235-88854481(-)$1	1	63	75	13.0000
(((((((((.((	chr6:11190229-11190462(-)$1	1	121	133	17.8000
........))))	chr14:23502692-23502948(-)$1	1	83	95	14.0000
))))).))))..	chr4:38690357-38690669(+)$1	1	234	246	14.6000
(((((....)))	chr2:171573341-171573554(+)$1	1	57	69	19.9000
))...)).).))	chr5:172195869-172196111(-)$1	1	151	163	14.0000
((.((.(((((.	chr2:3392139-3392406(+)$1	1	62	74	14.4000
..)))((..(((	chr19:39899166-39899405(+)$1	1	51	63	17.0000
))).))))))))	chr7:150934971-150935216(+)$1	1	115	127	16.5000
)).))).)))))	chr20:45353698-45353954(+)$1	1	225	237	16.2000

#PSSM
G : 0.68	A : 0.10	C : 0.10	g : 0.06	U : 0.06	
C : 0.68	G : 0.12	U : 0.12	c : 0.06	A : 0.02	
U : 0.66	A : 0.12	C : 0.08	G : 0.08	c : 0.04	u : 0.02	
G : 0.78	g : 0.08	U : 0.06	C : 0.06	A : 0.02	
C : 0.84	c : 0.08	U : 0.04	G : 0.04	
U : 0.58	A : 0.16	G : 0.12	C : 0.06	c : 0.04	a : 0.02	u : 0.02	
G : 0.86	g : 0.08	C : 0.04	U : 0.02	
C : 0.86	c : 0.08	G : 0.04	U : 0.02	
U : 0.46	A : 0.25	C : 0.12	G : 0.08	u : 0.06	c : 0.02	
G : 0.80	g : 0.08	C : 0.08	A : 0.02	U : 0.02	
C : 0.80	c : 0.08	G : 0.06	A : 0.04	U : 0.02	
C : 0.74	A : 0.08	G : 0.06	c : 0.04	U : 0.04	a : 0.02	g : 0.02	

#score	795.6000000000008
#seq	50
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_UTR_m1_run1.nuc.txt

#NT
ggagg	chr17:8076726-8076943(-)$1	217	74	79	14.9999
GGAGG	chr22:20004105-20004395(-)$1	290	71	76	14.9999
GGAGG	chrX:152954103-152954376(+)$1	273	184	189	14.9999
GGAGG	chr19:54971699-54971951(+)$1	252	100	105	14.9999
GGAGG	chr5:138629498-138629745(+)$1	247	55	60	14.9999
GGAGG	chr22:19710374-19710612(+)$1	238	163	168	14.9999
ggagg	chr17:8076657-8076872(-)$1	215	3	8	14.9999
GGAGG	chr19:4037882-4038140(+)$1	258	61	66	14.9999
GGAGG	chr2:97525789-97526033(-)$1	244	169	174	14.9999
GGAGG	chr3:186648354-186648607(+)$1	253	112	117	14.9999
GGAGG	chr7:150777528-150777804(-)$1	276	52	57	14.9999
ggagg	chr19:1652298-1652554(-)$1	256	108	113	14.9999
GGAGG	chr12:123997699-123998012(-)$1	313	177	182	14.9999
GGAGG	chr19:1881804-1882101(-)$1	297	160	165	14.9999
GGAGG	chr19:18547567-18547863(-)$1	296	16	21	14.9999
GGAGG	chr22:21983344-21983575(-)$1	231	3	8	14.9999
GGAGG	chr7:5569465-5569798(-)$1	333	268	273	14.9999
ggagg	chr17:8076768-8077003(-)$1	235	134	139	14.9999
ggagg	chr17:8076672-8076904(-)$1	232	35	40	14.9999
ggagg	chr7:5460950-5461221(-)$1	271	142	147	14.9999
GGAGG	chr1:32827795-32828062(-)$1	267	104	109	14.9999
GGAGG	chr11:290512-290764(+)$1	252	92	97	14.9999
GGAGG	chrX:153589595-153589864(-)$1	269	110	115	14.9999
GGAGG	chr4:78740390-78740673(-)$1	283	101	106	14.9999
GGAGG	chr3:184079460-184079790(+)$1	330	41	46	14.9999
GGAGG	chr22:20068093-20068356(+)$1	263	76	81	14.9999
ggagg	chr17:8076704-8076926(-)$1	222	57	62	14.9999
GGAGG	chr6:7107966-7108225(+)$1	259	168	173	14.9999
GGAGG	chr19:2425550-2425840(-)$1	290	251	256	14.9999
ggagg	chr6:86352567-86352820(-)$1	253	19	24	14.9999
GGAGG	chr8:101962963-101963244(-)$1	281	58	63	14.9999
GGAGG	chr19:52729134-52729495(+)$1	361	7	12	14.9999
GGAGG	chr7:5569349-5569609(-)$1	260	79	84	14.9999
GGAGG	chr6:167369854-167370160(-)$1	306	169	174	14.9999
GGAGG	chr22:50018397-50018654(-)$1	257	105	110	14.9999
ggagg	chr17:8076746-8076968(-)$1	222	99	104	14.9999
GGAGG	chr2:200323096-200323381(-)$1	285	121	126	14.9999

#otherMatches

#Struct PSSM
DDDdd	chr19:2425991-2426267(-)$1	276	14	19	14.9999
eeeee	chr17:8076726-8076943(-)$1	217	74	79	14.9999
hh]hh	chr22:20004105-20004395(-)$1	290	71	76	14.9999
ee[bb	chrX:152954103-152954376(+)$1	273	184	189	14.9999
IKKCC	chr19:54971699-54971951(+)$1	252	100	105	14.9999
"""ap	chr5:138629498-138629745(+)$1	247	55	60	14.9999
eeeee	chr22:19710374-19710612(+)$1	238	163	168	14.9999
CCCKK	chr17:8076657-8076872(-)$1	215	3	8	14.9999
ff[dd	chr19:4037882-4038140(+)$1	258	61	66	14.9999
cc]gg	chr2:97525789-97526033(-)$1	244	169	174	14.9999
hh:HH	chr3:186648354-186648607(+)$1	253	112	117	14.9999
ooccc	chr7:150777528-150777804(-)$1	276	52	57	14.9999
e!!bb	chr19:1652298-1652554(-)$1	256	108	113	14.9999
b[ggg	chr12:123997699-123998012(-)$1	313	177	182	14.9999
eeeee	chr19:1881804-1882101(-)$1	297	160	165	14.9999
:::::	chr19:18547567-18547863(-)$1	296	16	21	14.9999
DDDD{	chr22:21983344-21983575(-)$1	231	3	8	14.9999
i!!cc	chr7:5569465-5569798(-)$1	333	268	273	14.9999
eeeee	chr17:8076768-8077003(-)$1	235	134	139	14.9999
eeeee	chr17:8076672-8076904(-)$1	232	35	40	14.9999
dd[ee	chr7:5460950-5461221(-)$1	271	142	147	14.9999
eeee[	chr1:32827795-32828062(-)$1	267	104	109	14.9999
qqqcc	chr11:290512-290764(+)$1	252	92	97	14.9999
GG{DD	chrX:153589595-153589864(-)$1	269	110	115	14.9999
}JJJJ	chr4:78740390-78740673(-)$1	283	101	106	14.9999
bb!!c	chr3:184079460-184079790(+)$1	330	41	46	14.9999
eeeee	chr22:20068093-20068356(+)$1	263	76	81	14.9999
fffff	chr17:8076704-8076926(-)$1	222	57	62	14.9999
iiiii	chr6:7107966-7108225(+)$1	259	168	173	14.9999
dd[cc	chr19:2425550-2425840(-)$1	290	251	256	14.9999
NNNGG	chr6:86352567-86352820(-)$1	253	19	24	14.9999
sssse	chr8:101962963-101963244(-)$1	281	58	63	14.9999
FFFFF	chr19:52729134-52729495(+)$1	361	7	12	14.9999
FFFFF	chr7:5569349-5569609(-)$1	260	79	84	14.9999
qqqqq	chr6:167369854-167370160(-)$1	306	169	174	14.9999
""bb[	chr22:50018397-50018654(-)$1	257	105	110	14.9999
eeeee	chr17:8076746-8076968(-)$1	222	99	104	14.9999
bb]bb	chr2:200323096-200323381(-)$1	285	121	126	14.9999

#DB
(((((	chr19:2425991-2426267(-)$1	1	14	19	14.9999
)))))	chr17:8076726-8076943(-)$1	1	74	79	14.9999
)).))	chr22:20004105-20004395(-)$1	1	71	76	14.9999
((.((	chrX:152954103-152954376(+)$1	1	184	189	14.9999
(..((	chr19:54971699-54971951(+)$1	1	100	105	14.9999
...(.	chr5:138629498-138629745(+)$1	1	55	60	14.9999
)))))	chr22:19710374-19710612(+)$1	1	163	168	14.9999
(((..	chr17:8076657-8076872(-)$1	1	3	8	14.9999
((.((	chr19:4037882-4038140(+)$1	1	61	66	14.9999
)).))	chr2:97525789-97526033(-)$1	1	169	174	14.9999
)).))	chr3:186648354-186648607(+)$1	1	112	117	14.9999
..)))	chr7:150777528-150777804(-)$1	1	52	57	14.9999
(..((	chr19:1652298-1652554(-)$1	1	108	113	14.9999
(.(((	chr12:123997699-123998012(-)$1	1	177	182	14.9999
)))((	chr19:1881804-1882101(-)$1	1	160	165	14.9999
.....	chr19:18547567-18547863(-)$1	1	16	21	14.9999
((((.	chr22:21983344-21983575(-)$1	1	3	8	14.9999
(..((	chr7:5569465-5569798(-)$1	1	268	273	14.9999
)))))	chr17:8076768-8077003(-)$1	1	134	139	14.9999
)))))	chr17:8076672-8076904(-)$1	1	35	40	14.9999
((.((	chr7:5460950-5461221(-)$1	1	142	147	14.9999
((((.	chr1:32827795-32828062(-)$1	1	104	109	14.9999
...))	chr11:290512-290764(+)$1	1	92	97	14.9999
((.((	chrX:153589595-153589864(-)$1	1	110	115	14.9999
.))))	chr4:78740390-78740673(-)$1	1	101	106	14.9999
((..(	chr3:184079460-184079790(+)$1	1	41	46	14.9999
)))))	chr22:20068093-20068356(+)$1	1	76	81	14.9999
)))))	chr17:8076704-8076926(-)$1	1	57	62	14.9999
(((((	chr6:7107966-7108225(+)$1	1	168	173	14.9999
((.((	chr19:2425550-2425840(-)$1	1	251	256	14.9999
...((	chr6:86352567-86352820(-)$1	1	19	24	14.9999
....)	chr8:101962963-101963244(-)$1	1	58	63	14.9999
(((((	chr19:52729134-52729495(+)$1	1	7	12	14.9999
(((((	chr7:5569349-5569609(-)$1	1	79	84	14.9999
.....	chr6:167369854-167370160(-)$1	1	169	174	14.9999
..((.	chr22:50018397-50018654(-)$1	1	105	110	14.9999
)))))	chr17:8076746-8076968(-)$1	1	99	104	14.9999
)).))	chr2:200323096-200323381(-)$1	1	121	126	14.9999

#PSSM
G : 0.76	g : 0.23	
G : 0.76	g : 0.23	
A : 0.76	a : 0.23	
G : 0.76	g : 0.23	
G : 0.76	g : 0.23	

#score	569.9999999999999
#seq	38
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_transcript_m1_run2.nuc.txt

#NT
UUUUUUUAAAUU	chr8:130853711-130853953(-)$1	242	39	51	16.2678
UUUUUAUUUAGU	chr12:57923752-57923998(+)$1	246	198	210	17.2500
UUUUUACUGAUU	chr6:109688647-109688896(-)$1	249	41	53	15.4642
UUUUAUUUCAUU	chr22:22024810-22025090(+)$1	280	23	35	18.1428
UUUUUAUUAAUU	chr6:17646104-17646362(-)$1	258	226	238	20.0178
UUUUUCUCCUUU	chr17:40023470-40023713(-)$1	243	5	17	18.5000
UUUCUUUUCUUU	chr11:46765114-46765378(-)$1	264	81	93	17.5178
UAUUUUUUCCUU	chr12:54632020-54632266(-)$1	246	137	149	16.8035
UUUAUUUUCUUU	chr3:141622386-141622659(+)$1	273	58	70	17.6964
UGUUUCUUAUUU	chr20:31025927-31026180(+)$1	253	62	74	17.4285
UUUUUUGUCUUU	chr4:17625499-17625772(+)$1	273	143	155	17.3392
UUUUUCUUUUUG	chr20:33474417-33474703(+)$1	286	46	58	18.5000
UUUUUAUCCCUU	chr15:57384030-57384360(+)$1	330	115	127	15.5535
UUUUUCUUUUUU	chr3:10168011-10168261(+)$1	250	84	96	22.7857
UUUUGCUUCAGU	chr8:48812757-48813018(-)$1	261	91	103	14.9285
UAUUUCUUCUUU	chr6:31785553-31785806(+)$1	253	87	99	18.9464
UUUUUCUUUGUU	chr1:32508359-32508594(+)$1	235	113	125	21.3571
UUUAUUUUCUUU	chr21:38885863-38886118(+)$1	255	232	244	17.6964
AUUUUCUUUCUU	chr15:64980338-64980571(-)$1	233	86	98	17.8750
UUUUUCUUAAUG	chr15:32930173-32930453(+)$1	280	59	71	17.6964
UUUUUcuuuaau	chr10:102121443-102121671(+)$1	228	66	78	19.2142
CUUUUAUUCAUU	chr6:41067082-41067381(+)$1	299	266	278	17.5178
UUCUUCUUCAUU	chr1:155226974-155227232(-)$1	258	83	95	19.0357
UUUAUUUUCAUU	chr17:66527768-66528023(+)$1	255	235	247	18.3214
UGUUUCCUUAUU	chr7:30407083-30407363(+)$1	280	9	21	15.1071
uuuuucuguuuu	chr11:70281286-70281536(+)$1	250	65	77	18.2321
GUUUUCUUUCUU	chr1:242013822-242014082(+)$1	260	244	256	17.6964
UUUUUCUUUCUU	chr1:2239064-2239340(+)$1	276	61	73	21.8035
AUUUUCAUUAUU	chr7:97493398-97493630(-)$1	232	82	94	15.1071
auuuuauuuauu	chrX:123042822-123043049(+)$1	227	50	62	17.5178
UUUUCCUUCUUU	chr12:6857391-6857650(-)$1	259	87	99	18.5000
uguuuuuucuuu	chr1:207863359-207863628(+)$1	269	59	71	17.8750
UUUUUCUUUUUU	chr17:34051214-34051471(+)$1	257	88	100	22.7857
UUUUUCUUCAUU	chr2:65497253-65497500(+)$1	247	61	73	23.5892
GUUUUCUUCAGU	chr1:213341239-213341507(+)$1	268	100	112	15.2857
UUUUUCUUGAUC	chr20:39752613-39752863(+)$1	250	7	19	17.3392
UUUUAUUUCGUU	chr11:2979733-2979970(-)$1	237	84	96	16.0892
UUUUUCUUCCUU	chr19:1435121-1435350(+)$1	229	64	76	21.9821
UGUUUUUUAAUU	chr16:84700978-84701236(+)$1	258	19	31	16.8928
UUUUUAUUUAUG	chr11:72428328-72428584(-)$1	256	79	91	17.1607
CUUUUUUUCCUU	chr1:27108405-27108635(+)$1	230	87	99	16.7142
UUCUUUUUUAUU	chr1:205686558-205686808(-)$1	250	87	99	17.6964
UUUAUGUUCUUU	chr11:85720666-85720917(-)$1	251	118	130	16.6250
UUUUUCUUUUUU	chr22:41831879-41832120(-)$1	241	53	65	22.7857
UUUUUCUUCAAA	chr14:103809044-103809314(+)$1	270	75	87	14.9285
UUUCUCAUCAUU	chr21:39472292-39472556(-)$1	264	138	150	14.9285
UUUUUGUUUUUU	chr19:972545-972784(+)$1	239	55	67	20.5535
UUUUUUUUUUUU	chr7:148523111-148523350(-)$1	239	37	49	21.6250
UUUUUUUUCUUU	chr15:72875845-72876101(+)$1	256	75	87	21.8035
UCAUUCUUUAUU	chr6:163994235-163994445(+)$1	210	38	50	14.5714
UUUUUCUUGAAU	chr7:104703953-104704216(+)$1	263	100	112	17.6071
UUUUUGUUACUU	chr6:44217827-44218084(+)$1	257	186	198	18.1428
auuuuguugauu	chr11:32922212-32922503(+)$1	291	259	271	15.6428
UAUUACUUUAUU	chr4:79837267-79837531(+)$1	264	84	96	15.1071
UUUUUCUUUGUU	chr15:93428284-93428579(+)$1	295	106	118	21.3571

#otherMatches

#Struct PSSM
JJJJJJJJJJJP	chr12:56366290-56366545(+)$1	255	80	92	21.6250
ggg"""ddddtt	chr8:130853711-130853953(-)$1	242	39	51	16.2678
::::::::::ff	chr12:57923752-57923998(+)$1	246	198	210	17.2500
zzzzzzffffff	chr6:109688647-109688896(-)$1	249	41	53	15.4642
::::::::::::	chr22:22024810-22025090(+)$1	280	23	35	18.1428
gg::::::::::	chr6:17646104-17646362(-)$1	258	226	238	20.0178
GGggggggglll	chr17:40023470-40023713(-)$1	243	5	17	18.5000
ooccc:::::::	chr11:46765114-46765378(-)$1	264	81	93	17.5178
hhhhh:::::::	chr12:54632020-54632266(-)$1	246	137	149	16.8035
::::::::::::	chr3:141622386-141622659(+)$1	273	58	70	17.6964
fff:::::::::	chr20:31025927-31026180(+)$1	253	62	74	17.4285
:::dddd$$$$$	chr4:17625499-17625772(+)$1	273	143	155	17.3392
fffff:::::::	chr20:33474417-33474703(+)$1	286	46	58	18.5000
vvvvvvvvveee	chr15:57384030-57384360(+)$1	330	115	127	15.5535
gg]ffffff:::	chr3:10168011-10168261(+)$1	250	84	96	22.7857
+++++ffffff"	chr8:48812757-48813018(-)$1	261	91	103	14.9285
::::::::::::	chr6:31785553-31785806(+)$1	253	87	99	18.9464
e[ggggggg###	chr1:32508359-32508594(+)$1	235	113	125	21.3571
::::::::::::	chr21:38885863-38886118(+)$1	255	232	244	17.6964
cttttttttttt	chr15:64980338-64980571(-)$1	233	86	98	17.8750
cc::::dddd[c	chr15:32930173-32930453(+)$1	280	59	71	17.6964
=:gggggggooo	chr10:102121443-102121671(+)$1	228	66	78	19.2142
:::::::ddddq	chr6:41067082-41067381(+)$1	299	266	278	17.5178
^^^^^^^^^^^^	chr1:155226974-155227232(-)$1	258	83	95	19.0357
2dddd4444ggg	chr17:66527768-66528023(+)$1	255	235	247	18.3214
C{CCCKKFFFFF	chr7:30407083-30407363(+)$1	280	9	21	15.1071
333dddd:::::	chr11:70281286-70281536(+)$1	250	65	77	18.2321
CC::::::::::	chr1:242013822-242014082(+)$1	260	244	256	17.6964
LGGGGGGGMMMM	chr1:2239064-2239340(+)$1	276	61	73	21.8035
iiiiiii^^^^^	chr7:97493398-97493630(-)$1	232	82	94	15.1071
a!!cccoooooo	chrX:123042822-123043049(+)$1	227	50	62	17.5178
::::::::::::	chr12:6857391-6857650(-)$1	259	87	99	18.5000
occc>>>>>>>>	chr1:207863359-207863628(+)$1	269	59	71	17.8750
^^^^^^^^^^^^	chr17:34051214-34051471(+)$1	257	88	100	22.7857
ffffffdddd!!	chr2:65497253-65497500(+)$1	247	61	73	23.5892
CCFFFFFFffff	chr1:213341239-213341507(+)$1	268	100	112	15.2857
D:::::::eeee	chr20:39752613-39752863(+)$1	250	7	19	17.3392
fff333gggggg	chr11:2979733-2979970(-)$1	237	84	96	16.0892
))))))ddddqq	chr19:1435121-1435350(+)$1	229	64	76	21.9821
{AMMMMFFFFFF	chr16:84700978-84701236(+)$1	258	19	31	16.8928
^^^^^^^^^^^^	chr11:72428328-72428584(-)$1	256	79	91	17.1607
qqccc22bb333	chr1:27108405-27108635(+)$1	230	87	99	16.7142
GGGG::::::::	chr1:205686558-205686808(-)$1	250	87	99	17.6964
###ddddnnnnn	chr11:85720666-85720917(-)$1	251	118	130	16.6250
::::::::::::	chr22:41831879-41832120(-)$1	241	53	65	22.7857
qqqqeeeee:::	chr14:103809044-103809314(+)$1	270	75	87	14.9285
^^^^^^^^^^^^	chr21:39472292-39472556(-)$1	264	138	150	14.9285
dmmmmdddd:::	chr19:972545-972784(+)$1	239	55	67	20.5535
I:::::::::::	chr7:148523111-148523350(-)$1	239	37	49	21.6250
^^^^^^^^^^^^	chr15:72875845-72876101(+)$1	256	75	87	21.8035
ttttttttffff	chr6:163994235-163994445(+)$1	210	38	50	14.5714
%==========[	chr7:104703953-104704216(+)$1	263	100	112	17.6071
ggggggg!!ccc	chr6:44217827-44218084(+)$1	257	186	198	18.1428
d22eeeee7777	chr11:32922212-32922503(+)$1	291	259	271	15.6428
BBRRRRRRRRRC	chr4:79837267-79837531(+)$1	264	84	96	15.1071
=========[ee	chr15:93428284-93428579(+)$1	295	106	118	21.3571

#DB
(((((((((((.	chr12:56366290-56366545(+)$1	1	80	92	21.6250
(((...((((..	chr8:130853711-130853953(-)$1	1	39	51	16.2678
..........((	chr12:57923752-57923998(+)$1	1	198	210	17.2500
......))))))	chr6:109688647-109688896(-)$1	1	41	53	15.4642
............	chr22:22024810-22025090(+)$1	1	23	35	18.1428
))..........	chr6:17646104-17646362(-)$1	1	226	238	20.0178
(((((((((...	chr17:40023470-40023713(-)$1	1	5	17	18.5000
..))).......	chr11:46765114-46765378(-)$1	1	81	93	17.5178
))))).......	chr12:54632020-54632266(-)$1	1	137	149	16.8035
............	chr3:141622386-141622659(+)$1	1	58	70	17.6964
))).........	chr20:31025927-31026180(+)$1	1	62	74	17.4285
...((((.....	chr4:17625499-17625772(+)$1	1	143	155	17.3392
))))).......	chr20:33474417-33474703(+)$1	1	46	58	18.5000
.........)))	chr15:57384030-57384360(+)$1	1	115	127	15.5535
)).))))))...	chr3:10168011-10168261(+)$1	1	84	96	22.7857
.....((((((.	chr8:48812757-48813018(-)$1	1	91	103	14.9285
............	chr6:31785553-31785806(+)$1	1	87	99	18.9464
(.(((((((...	chr1:32508359-32508594(+)$1	1	113	125	21.3571
............	chr21:38885863-38886118(+)$1	1	232	244	17.6964
(...........	chr15:64980338-64980571(-)$1	1	86	98	17.8750
))....((((.(	chr15:32930173-32930453(+)$1	1	59	71	17.6964
).(((((((...	chr10:102121443-102121671(+)$1	1	66	78	19.2142
.......((((.	chr6:41067082-41067381(+)$1	1	266	278	17.5178
............	chr1:155226974-155227232(-)$1	1	83	95	19.0357
.))))....)))	chr17:66527768-66528023(+)$1	1	235	247	18.3214
(.(((..(((((	chr7:30407083-30407363(+)$1	1	9	21	15.1071
...)))).....	chr11:70281286-70281536(+)$1	1	65	77	18.2321
))..........	chr1:242013822-242014082(+)$1	1	244	256	17.6964
.(((((((....	chr1:2239064-2239340(+)$1	1	61	73	21.8035
(((((((.....	chr7:97493398-97493630(-)$1	1	82	94	15.1071
(..(((......	chrX:123042822-123043049(+)$1	1	50	62	17.5178
............	chr12:6857391-6857650(-)$1	1	87	99	18.5000
.)))........	chr1:207863359-207863628(+)$1	1	59	71	17.8750
............	chr17:34051214-34051471(+)$1	1	88	100	22.7857
))))))((((..	chr2:65497253-65497500(+)$1	1	61	73	23.5892
((((((((((((	chr1:213341239-213341507(+)$1	1	100	112	15.2857
(.......((((	chr20:39752613-39752863(+)$1	1	7	19	17.3392
)))...))))))	chr11:2979733-2979970(-)$1	1	84	96	16.0892
......((((..	chr19:1435121-1435350(+)$1	1	64	76	21.9821
.(....((((((	chr16:84700978-84701236(+)$1	1	19	31	16.8928
............	chr11:72428328-72428584(-)$1	1	79	91	17.1607
..)))..))...	chr1:27108405-27108635(+)$1	1	87	99	16.7142
((((........	chr1:205686558-205686808(-)$1	1	87	99	17.6964
...((((.....	chr11:85720666-85720917(-)$1	1	118	130	16.6250
............	chr22:41831879-41832120(-)$1	1	53	65	22.7857
....)))))...	chr14:103809044-103809314(+)$1	1	75	87	14.9285
............	chr21:39472292-39472556(-)$1	1	138	150	14.9285
(....))))...	chr19:972545-972784(+)$1	1	55	67	20.5535
(...........	chr7:148523111-148523350(-)$1	1	37	49	21.6250
............	chr15:72875845-72876101(+)$1	1	75	87	21.8035
........))))	chr6:163994235-163994445(+)$1	1	38	50	14.5714
.((((((((((.	chr7:104703953-104704216(+)$1	1	100	112	17.6071
(((((((..(((	chr6:44217827-44218084(+)$1	1	186	198	18.1428
)..)))))....	chr11:32922212-32922503(+)$1	1	259	271	15.6428
((.........(	chr4:79837267-79837531(+)$1	1	84	96	15.1071
(((((((((.((	chr15:93428284-93428579(+)$1	1	106	118	21.3571

#PSSM
U : 0.82	A : 0.03	C : 0.03	u : 0.03	G : 0.03	a : 0.03	
U : 0.80	A : 0.05	G : 0.05	u : 0.05	g : 0.01	C : 0.01	
U : 0.87	u : 0.07	C : 0.03	A : 0.01	
U : 0.82	A : 0.07	u : 0.07	C : 0.03	
U : 0.83	u : 0.07	A : 0.05	G : 0.01	C : 0.01	
C : 0.48	U : 0.26	A : 0.10	G : 0.05	c : 0.03	a : 0.01	u : 0.01	g : 0.01	
U : 0.82	u : 0.08	C : 0.03	A : 0.03	G : 0.01	
U : 0.85	u : 0.07	C : 0.03	A : 0.01	g : 0.01	
C : 0.41	U : 0.33	A : 0.10	G : 0.05	u : 0.05	c : 0.01	g : 0.01	
A : 0.41	U : 0.30	C : 0.14	G : 0.05	a : 0.05	u : 0.03	
U : 0.82	u : 0.07	G : 0.05	A : 0.03	a : 0.01	
U : 0.82	u : 0.08	G : 0.05	C : 0.01	A : 0.01	

#score	1016.5357142857151
#seq	56
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_transcript_m1_run2.nuc.txt

#NT
GCUGAG	chr11:5290961-5291214(-)$1	253	109	115	14.5740
ACUGAG	chr11:5289642-5289871(-)$1	229	168	174	10.9629
gcugag	chr7:120887311-120887593(+)$1	282	264	270	14.5740
GCAGAG	chr11:812698-812942(+)$1	244	60	66	11.3333
GCUGAA	chr11:62284060-62284273(-)$1	213	199	205	11.1481
GCUGAC	chr7:97481392-97481639(-)$1	247	35	41	11.3333
GCUGAG	chr11:62300894-62301151(-)$1	257	246	252	14.5740
gcagag	chr2:168740640-168740888(-)$1	248	27	33	11.3333
GCUGAG	chr19:4657706-4657989(-)$1	283	204	210	14.5740
CCUGAG	chr7:128411348-128411576(+)$1	228	15	21	11.4259
GCUGAG	chr15:66797024-66797272(-)$1	248	110	116	14.5740
GCUGAA	chr11:62284215-62284446(-)$1	231	14	20	11.1481
UCUGAG	chr17:56408159-56408411(-)$1	252	174	180	11.1481
ACUGAG	chr11:5289627-5289839(-)$1	212	136	142	10.9629
GCUGAG	chr12:120878385-120878626(+)$1	241	160	166	14.5740
GCCGAG	chr19:49122295-49122533(-)$1	238	113	119	11.1481
GCCGAG	chr19:58898591-58898809(+)$1	218	80	86	11.1481
GCUGAA	chr12:96259679-96260001(+)$1	322	276	282	11.1481
gcugag	chr3:6624588-6624889(+)$1	301	150	156	14.5740
GCUGAG	chr12:54058874-54059141(-)$1	267	229	235	14.5740
GCAGAG	chr8:58118255-58118530(+)$1	275	171	177	11.3333
CCUGAG	chr11:62298465-62298735(-)$1	270	18	24	11.4259
gccgag	chr16:88709610-88709920(-)$1	310	52	58	11.1481
GCUGAC	chr12:49666951-49667206(+)$1	255	26	32	11.3333
GCUGAA	chr3:37366554-37366861(+)$1	307	110	116	11.1481
UCUGAG	chr19:10406316-10406578(+)$1	262	6	12	11.1481
gcugag	chr7:120887393-120887677(+)$1	284	182	188	14.5740
gcugaa	chr8:91268914-91269174(+)$1	260	221	227	11.1481
GCUGAG	chr9:140137939-140138242(+)$1	303	48	54	14.5740
GCAGAG	chr7:120897476-120897751(+)$1	275	46	52	11.3333
GCUGAC	chr19:58898538-58898791(+)$1	253	44	50	11.3333
GCUGAC	chrX:153609540-153609763(+)$1	223	68	74	11.3333
GCUGAG	chr11:5269494-5269750(-)$1	256	236	242	14.5740
GCUGAG	chr12:56553924-56554200(+)$1	276	34	40	14.5740
GCUGAC	chr19:36145438-36145672(+)$1	234	8	14	11.3333
gcugag	chr19:50437002-50437268(+)$1	266	258	264	14.5740
GCAGAG	chr14:50052567-50052780(-)$1	213	147	153	11.3333
CCUGAG	chr11:5274406-5274688(-)$1	282	110	116	11.4259
CCUGAG	chr11:62294343-62294588(-)$1	245	125	131	11.4259
GCAGAG	chr3:9519598-9519849(+)$1	251	22	28	11.3333
CCUGAG	chr11:62392275-62392520(-)$1	245	39	45	11.4259
GCUGAG	chr11:5290937-5291161(-)$1	224	56	62	14.5740
GCUGAC	chr12:49666910-49667151(+)$1	241	67	73	11.3333
CCUGAG	chr2:98263714-98263961(+)$1	247	4	10	11.4259
GCCGAG	chr11:62341202-62341430(-)$1	228	80	86	11.1481
gcugag	chr3:6624689-6624928(+)$1	239	49	55	14.5740
CCUGAG	chr15:44086058-44086290(+)$1	232	33	39	11.4259
GCCGAG	chr15:44063392-44063642(+)$1	250	124	130	11.1481
GCUGAG	chr16:88876057-88876305(-)$1	248	98	104	14.5740
GCUGAC	chrX:153609563-153609816(+)$1	253	45	51	11.3333
UCUGAG	chr22:21998434-21998668(+)$1	234	25	31	11.1481
gcagag	chr2:168740712-168740947(-)$1	235	86	92	11.3333
UCugag	chr5:132202587-132202829(+)$1	242	209	215	11.1481

#otherMatches

#Struct PSSM
dddd[a	chr16:204289-204594(+)$1	305	105	111	14.5740
mmmmbb	chr11:5290961-5291214(-)$1	253	109	115	14.5740
dddd[a	chr11:5289642-5289871(-)$1	229	168	174	10.9629
cc::::	chr7:120887311-120887593(+)$1	282	264	270	14.5740
======	chr11:812698-812942(+)$1	244	60	66	11.3333
DDDD??	chr11:62284060-62284273(-)$1	213	199	205	11.1481
ffffff	chr7:97481392-97481639(-)$1	247	35	41	11.3333
DD~~~~	chr11:62300894-62301151(-)$1	257	246	252	14.5740
::::::	chr2:168740640-168740888(-)$1	248	27	33	11.3333
hhh"""	chr19:4657706-4657989(-)$1	283	204	210	14.5740
CKKCCC	chr7:128411348-128411576(+)$1	228	15	21	11.4259
cccooo	chr15:66797024-66797272(-)$1	248	110	116	14.5740
mccc::	chr11:62284215-62284446(-)$1	231	14	20	11.1481
hhh22c	chr17:56408159-56408411(-)$1	252	174	180	11.1481
dddd[a	chr11:5289627-5289839(-)$1	212	136	142	10.9629
DDDDDD	chr12:120878385-120878626(+)$1	241	160	166	14.5740
dddd""	chr19:49122295-49122533(-)$1	238	113	119	11.1481
dddccc	chr19:58898591-58898809(+)$1	218	80	86	11.1481
c]eeee	chr12:96259679-96260001(+)$1	322	276	282	11.1481
eee[a"	chr3:6624588-6624889(+)$1	301	150	156	14.5740
ddd!!d	chr12:54058874-54059141(-)$1	267	229	235	14.5740
2a22cc	chr8:58118255-58118530(+)$1	275	171	177	11.3333
beeeee	chr11:62298465-62298735(-)$1	270	18	24	11.4259
CC{EEE	chr16:88709610-88709920(-)$1	310	52	58	11.1481
d!!eee	chr12:49666951-49667206(+)$1	255	26	32	11.3333
EEE:::	chr3:37366554-37366861(+)$1	307	110	116	11.1481
BB:ggg	chr19:10406316-10406578(+)$1	262	6	12	11.1481
DD||||	chr7:120887393-120887677(+)$1	284	182	188	14.5740
nnnnne	chr8:91268914-91269174(+)$1	260	221	227	11.1481
ggg###	chr9:140137939-140138242(+)$1	303	48	54	14.5740
4dddd]	chr7:120897476-120897751(+)$1	275	46	52	11.3333
d:dddd	chr19:58898538-58898791(+)$1	253	44	50	11.3333
ggg::g	chrX:153609540-153609763(+)$1	223	68	74	11.3333
dddDDD	chr11:5269494-5269750(-)$1	256	236	242	14.5740
BB:::b	chr12:56553924-56554200(+)$1	276	34	40	14.5740
nnnnnb	chr19:36145438-36145672(+)$1	234	8	14	11.3333
gggggg	chr19:50437002-50437268(+)$1	266	258	264	14.5740
JJJJJ}	chr14:50052567-50052780(-)$1	213	147	153	11.3333
nnnnnd	chr11:5274406-5274688(-)$1	282	110	116	11.4259
B{BB:d	chr11:62294343-62294588(-)$1	245	125	131	11.4259
CCNNNN	chr3:9519598-9519849(+)$1	251	22	28	11.3333
dddd22	chr11:62392275-62392520(-)$1	245	39	45	11.4259
mmmmbb	chr11:5290937-5291161(-)$1	224	56	62	14.5740
d!!eee	chr12:49666910-49667151(+)$1	241	67	73	11.3333
::EEEE	chr2:98263714-98263961(+)$1	247	4	10	11.4259
GGGGGL	chr11:62341202-62341430(-)$1	228	80	86	11.1481
eee[a"	chr3:6624689-6624928(+)$1	239	49	55	14.5740
d4444c	chr15:44086058-44086290(+)$1	232	33	39	11.4259
ooofff	chr15:44063392-44063642(+)$1	250	124	130	11.1481
cc:III	chr16:88876057-88876305(-)$1	248	98	104	14.5740
ggg::g	chrX:153609563-153609816(+)$1	253	45	51	11.3333
[annnn	chr22:21998434-21998668(+)$1	234	25	31	11.1481
BB::::	chr2:168740712-168740947(-)$1	235	86	92	11.3333
DDDYYC	chr5:132202587-132202829(+)$1	242	209	215	11.1481

#DB
((((.(	chr16:204289-204594(+)$1	1	105	111	14.5740
....))	chr11:5290961-5291214(-)$1	1	109	115	14.5740
((((.(	chr11:5289642-5289871(-)$1	1	168	174	10.9629
))....	chr7:120887311-120887593(+)$1	1	264	270	14.5740
))))))	chr11:812698-812942(+)$1	1	60	66	11.3333
))))..	chr11:62284060-62284273(-)$1	1	199	205	11.1481
((((((	chr7:97481392-97481639(-)$1	1	35	41	11.3333
))....	chr11:62300894-62301151(-)$1	1	246	252	14.5740
......	chr2:168740640-168740888(-)$1	1	27	33	11.3333
(((...	chr19:4657706-4657989(-)$1	1	204	210	14.5740
(..(((	chr7:128411348-128411576(+)$1	1	15	21	11.4259
(((...	chr15:66797024-66797272(-)$1	1	110	116	14.5740
.)))..	chr11:62284215-62284446(-)$1	1	14	20	11.1481
)))..)	chr17:56408159-56408411(-)$1	1	174	180	11.1481
((((.(	chr11:5289627-5289839(-)$1	1	136	142	10.9629
))))))	chr12:120878385-120878626(+)$1	1	160	166	14.5740
((((..	chr19:49122295-49122533(-)$1	1	113	119	11.1481
((((((	chr19:58898591-58898809(+)$1	1	80	86	11.1481
).))))	chr12:96259679-96260001(+)$1	1	276	282	11.1481
(((.(.	chr3:6624588-6624889(+)$1	1	150	156	14.5740
(((..(	chr12:54058874-54059141(-)$1	1	229	235	14.5740
.)..))	chr8:58118255-58118530(+)$1	1	171	177	11.3333
((((((	chr11:62298465-62298735(-)$1	1	18	24	11.4259
((.(((	chr16:88709610-88709920(-)$1	1	52	58	11.1481
(..(((	chr12:49666951-49667206(+)$1	1	26	32	11.3333
(((...	chr3:37366554-37366861(+)$1	1	110	116	11.1481
((.(((	chr19:10406316-10406578(+)$1	1	6	12	11.1481
))....	chr7:120887393-120887677(+)$1	1	182	188	14.5740
.....)	chr8:91268914-91269174(+)$1	1	221	227	11.1481
(((...	chr9:140137939-140138242(+)$1	1	48	54	14.5740
.)))).	chr7:120897476-120897751(+)$1	1	46	52	11.3333
).((((	chr19:58898538-58898791(+)$1	1	44	50	11.3333
)))..(	chrX:153609540-153609763(+)$1	1	68	74	11.3333
))))))	chr11:5269494-5269750(-)$1	1	236	242	14.5740
((...(	chr12:56553924-56554200(+)$1	1	34	40	14.5740
.....)	chr19:36145438-36145672(+)$1	1	8	14	11.3333
))))))	chr19:50437002-50437268(+)$1	1	258	264	14.5740
))))).	chr14:50052567-50052780(-)$1	1	147	153	11.3333
.....)	chr11:5274406-5274688(-)$1	1	110	116	11.4259
(.((.(	chr11:62294343-62294588(-)$1	1	125	131	11.4259
((....	chr3:9519598-9519849(+)$1	1	22	28	11.3333
))))..	chr11:62392275-62392520(-)$1	1	39	45	11.4259
....))	chr11:5290937-5291161(-)$1	1	56	62	14.5740
(..(((	chr12:49666910-49667151(+)$1	1	67	73	11.3333
..((((	chr2:98263714-98263961(+)$1	1	4	10	11.4259
(((((.	chr11:62341202-62341430(-)$1	1	80	86	11.1481
(((.(.	chr3:6624689-6624928(+)$1	1	49	55	14.5740
)....)	chr15:44086058-44086290(+)$1	1	33	39	11.4259
...)))	chr15:44063392-44063642(+)$1	1	124	130	11.1481
)).(((	chr16:88876057-88876305(-)$1	1	98	104	14.5740
)))..(	chrX:153609563-153609816(+)$1	1	45	51	11.3333
.(....	chr22:21998434-21998668(+)$1	1	25	31	11.1481
((....	chr2:168740712-168740947(-)$1	1	86	92	11.3333
)))..)	chr5:132202587-132202829(+)$1	1	209	215	11.1481

#PSSM
G : 0.59	g : 0.16	C : 0.12	U : 0.07	A : 0.03	
C : 0.83	c : 0.16	
U : 0.64	u : 0.12	A : 0.09	C : 0.07	a : 0.03	c : 0.01	
G : 0.81	g : 0.18	
A : 0.81	a : 0.18	
G : 0.61	g : 0.16	C : 0.12	A : 0.07	a : 0.01	

#score	664.4074074074068
#seq	54
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_transcript_m1_run2.nuc.txt

#NT
gcuggugcaaguacaaugguauuuacaacuuauugaucacaaacaguuacagauuccuuuguucuuucuccacccccacugcuucacuugacuagccuuuAAAA	chr20:23438136-23438352(-)$1	216	31	135	228.3749
guugggccgagugcagugguguuuacaaauaauugaucacaaccagcuauagacuucuuuguuucuucucuaucuccuuugcuucacuugacuagccuuAAAAA	chr2:42084392-42084603(-)$1	211	92	196	214.2500
gcuggucugagugcauugguguuuacaacuaauugaucauaaucaguuacagauuucuuuauucauucuccacucccacugcuucacuugacuagccuaaaaaa	chr14:50553678-50553898(+)$1	220	22	126	246.2499
gcuggucugagugcagugguguuuacaacuaauugaucacaagcaguuacaggucucuuuguuccuucuccacucccacugcuucacuugacuagccuaaaaaa	chr14:21147525-21147728(+)$1	203	45	149	254.6249
guugggccgagugcagugguguuuacaaauaauugaucacaaccagcuauagacuucuuuguuucuucucuaucuccuuugcuucacuugacuagccuuAAAAA	chr2:42084381-42084592(-)$1	211	81	185	214.2500
gcugguccgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuuUGCU	chr7:148680793-148681041(+)$1	248	54	158	251.7500
gcuggugcaaguacaaugguauuuacaacuuauugaucacaaacaguuacagauuccuuuguucuuucuccacccccacugcuucacuugacuagccuuuAAAA	chr20:23438122-23438336(-)$1	214	15	119	228.3749
gcugguccaagugcagugguguuuacagguaaccgaucacaaccaguuacagauuuuguuucuccuucuccacucccacugcuucacuugacuagucAAAAAAA	chr4:154187975-154188196(-)$1	221	35	139	226.2499
gcugguccaaaugcagugguguuuacaacuaauugaucacaucccguuauggauuucuuuguuuccuuuccacucccacugcuucacuugacuagccuAAGAAA	chr13:49669490-49669733(+)$1	243	37	141	228.6250
gcuuguccgagugcagugguguuuacaauuaauugaugacaaucaguuacagauuuuuuuguuccuucuccauucccacugcuucacuugacuagUUAAAACCA	chr18:12760679-12760914(+)$1	235	37	141	226.2499
gcugguccaagugcagugguguuuacagguaaccgaucacaaccaguuacagauuuuguuucuccuucuccacucccacugcuucacuugacuagucAAAAAAA	chr4:154187963-154188175(-)$1	212	14	118	226.2499
gcugcuucgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuCUUAA	chr12:42848480-42848703(+)$1	223	42	146	249.7499
gcugguccgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuuUGCU	chr7:148680746-148680990(+)$1	244	101	205	251.7500
gcugguccgagugcagugguguuuacaacgacgugaucacaaucaguuauggaugucuuuguucuuucuccacucccacugcuucauuuugacuagcUGaaaaa	chrX:16930335-16930540(-)$1	205	101	205	203.6249
gcugguccgagugcagugguguuuacaacgacgugaucacaaucaguuauggaugucuuuguucuuucuccacucccacugcuucauuuugacuagcUGaaaaa	chrX:16930309-16930535(-)$1	226	96	200	203.6249
gcugcuucgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuCUUAA	chr12:42848504-42848722(+)$1	218	18	122	249.7499
gcuggucugagugcagugguguuuacaacucauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucauuugacuagucuuaaaaa	chr1:153758103-153758343(-)$1	240	47	151	253.6249
gcuggucaaagugcaacggucuuuacaacuaauugaucacaaccaguuacagauuuuuuuguuccuucuccacuccaacugcuucacuugacuagcAUAAGGAA	chr7:99928301-99928510(-)$1	209	11	115	230.3749
gcugguccaagugcagugguguuuacgacuaauuugucauaaccaguuauagauuucuuuguuccuuuuccacucccacugcuucacuugacuagccuuuGAAA	chr17:43148771-43149015(+)$1	244	39	143	235.1250
gcuggucugagugcagugguguuuacaacuaauugaucacaagcaguuacaggucucuuuguuccuucuccacucccacugcuucacuugacuagccuaaaaaa	chr14:21147564-21147769(+)$1	205	6	110	254.6249
gcugguccgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuucacuuugacugcuucacucggcuagccAGAAAAA	chrX:117048165-117048418(-)$1	253	111	215	235.9999
guugguccgaguacagagguauuugcaacugauugauuacaacuaguuacagauuuguuuguuccuucuccacucccacugcuucacuugacuagccuAAAAAA	chr10:21770604-21770844(+)$1	240	41	145	230.1249
gcugguccgagugcaguggaguuuacaacuaauuaauuacaaccaguuacagauuuauuuguuccuucucuacucccacugcuucacuugacuagccaaaaaua	chr14:50058853-50059098(-)$1	245	44	148	239.7499
gccggcucgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagucuuuAAAA	chr20:16651190-16651395(-)$1	205	9	113	249.9999
gcuggucugagugcagugguauuuacaacuaauugaucacaaucaguuauagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuuuaaa	chr14:100049310-100049556(+)$1	246	44	148	251.1249
gcuggucugagugcauugguguuuacaacuaauugaucauaaucaguuacagauuucuuuauucauucuccacucccacugcuucacuugacuagccuaaaaaa	chr14:50553660-50553878(+)$1	218	40	144	246.2499
gcuggucugagugcaguggugcuuacaacuaauuggucacaaccaauuacagauuuauuuguucauuuuccacuccuacugcuucaguugacuagccaaaaaca	chr12:45274620-45274853(-)$1	233	102	206	225.1249
gcaggucccagugcagagguguuuacaacuaauuaaucacaaccaguuacagauugccuuguuucuucuccucucccacugcuucacuugacuagccuAAAAAA	chr12:97373209-97373439(-)$1	230	33	137	234.5000
gcugguccgagugcagugguguuuacaacuagcugaucacaaccaguuacugaugucauuguuccuucuccacucccacugcuucacuugccuUUACAAAAAGU	chr10:128609264-128609510(+)$1	246	112	216	220.9999
gcuggucugagugcagugguguuuacaacuaauugaucacaagcaguuacaggucucuuuguuccuucuccacucccacugcuucacuugacuagccuaaaaaa	chr14:21147528-21147764(+)$1	236	42	146	254.6249
gcugguccaagugcagugguguuuacaacuaauuguucacaaccaguuacauauuucuuuguuccuucuccacucccacugcuucacuugacuauccuaauaaa	chr19:6572888-6573107(-)$1	219	40	144	250.2499
gcugguccuagugcagugguguuuacaacuaauucaucacaaccaguuagagauuucuuucuuccuucuccacucccacugcuucacuugacuagccuuAAAAA	chr17:48463407-48463657(-)$1	250	51	155	251.9999
gcugguccgaauacaguaguguuuacaacuaauugaucacaaccaguuacagauuucuuggucccuucuccacucccacugcuucacuugacuagccuuAAAAU	chr11:64063470-64063707(+)$1	237	39	143	241.7499
ggcugucugagugcagugguguuuacaacaaauugaucacaaccaguuacagguuucuuuguuccuucuccacucccacuguuucacuuggcuuaccuuaaaaa	chr5:149477876-149478086(+)$1	210	92	196	230.3749
ggcugucugagugcagugguguuuacaacaaauugaucacaaccaguuacagguuucuuuguuccuucuccacucccacuguuucacuuggcuuaccuuaaaaa	chr5:149477886-149478099(+)$1	213	82	186	230.3749
ggcuggucccauacagugguguuuacaacuaauugaucacaaccaguuacagacuucuuuguuucuucuccacucccacugcuucacuugacuagccCuaauaa	chr4:41305155-41305389(-)$1	234	35	139	217.1249
gccggucugaguacagugguauuuacaacuaacugaucacaaaaacuaauagauuuauuuguuccuucuccacucccacugcuucacuugacuagaaaaaaaaa	chr14:90051965-90052203(+)$1	238	41	145	216.6249
gcugguccgagugcagugguguuuacaacuaauugaucacaaccaguuacagauuucuuuguuccuucuccacucccacugcuucacuugacuagccuuuUGCU	chr7:148680841-148681044(+)$1	203	6	110	251.7500
gcugguccaagugcagugguguuuacaacuaauuguucacaaccaguuacauauuucuuuguuccuucuccacucccacugcuucacuugacuauccuaauaaa	chr19:6572871-6573088(-)$1	217	21	125	250.2499

#otherMatches

#Struct PSSM
iiiiiii[ddddggggggg[bb!!ggggggg++++++++++++ddddmmmmddddggggggg999999999bb22ggggggg333ddddiiiiiiiii55555c	chr11:107955586-107955844(+)$1	258	54	158	239.9999
mmffffffccc[dddd[bb[dddd!!dddd!!cccmmmmccc22dddd22dddd]bb]dddd]ccc:::::EEEEEA}DDDD::::::::::::CCC:::::::	chr20:23438136-23438352(-)$1	216	31	135	228.3749
HHHHHKKFFFFFF{CCCcccbb"""cccmmmmccc333bb]ccc::::::ddddoooooodddd::::::::::::::::CCC}FFFFFF}HHHHHHHH:::::	chr2:42084392-42084603(-)$1	211	92	196	214.2500
IIIIIIIIKKCCCLLLFFFFFF:::::::hhhhhhhhmmmmhhhhhhhh:::::::::::::::::::::::::::::::::::::::::::ffffff^^^^^^	chr14:50553678-50553898(+)$1	220	22	126	246.2499
HHHHHHHDDDD{GGGGGGG:::::::dddd!!cccmmmmccc22dddd::cccssssssssssccc:::::::::GGGGGGGDDDDZZZHHHHHHHH@@@@@@@	chr14:21147525-21147728(+)$1	203	45	149	254.6249
ff]ccc:FFFFFF{CCCcccbb"""cccmmmmccc333bb]ccc::::::ddddoooooodddd::::::::::::::::CCC}FFFFFFZZZEEEEE::::::	chr2:42084381-42084592(-)$1	211	81	185	214.2500
HHHHHHH{EEEEE{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}EEEEEHHHHHHHHeeeeedd	chr7:148680793-148681041(+)$1	248	54	158	251.7500
iiiiii[eeeeedddd[bb[dddd!!dddd!!cccmmmmccc22dddd22dddd]bb]dddd>>>>>>>>>>>>>>>>>>>>>>>eeeeeiiiiiiiii:::::	chr20:23438122-23438336(-)$1	214	15	119	228.3749
iiiiiii[ddddggggggg[bb####ccc[ccc[ddddvvvvvvvvvvvvvdddd22ccc333ccc55555bb22ggggggg333ddddiiiiiiiii::::::	chr4:154187975-154188196(-)$1	221	35	139	226.2499
ggggggg$$$$$ggggggg[bb####ccc$$$$$dddd[cccoooooocccdddd55555ccc88888888bb22ggggggg7777777ggggggg:=======	chr13:49669490-49669733(+)$1	243	37	141	228.6250
EEEE{BB{FFFFFFEEEEE::::::::::hhhhhhhhmmmmhhhhhhhhddddmmmmdddd::::::::::::::EEEEEeeeee[ccc%%%%%%ffffffppp	chr18:12760679-12760914(+)$1	235	37	141	226.2499
iiiiiii[ddddggggggg[bb####ccc[ccc[ddddvvvvvvvvvvvvvdddd22ccc333ccc55555bb22ggggggg333ddddiiiiiiiii::::::	chr4:154187963-154188175(-)$1	212	14	118	226.2499
EEEEKKGGGGGGG{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}GGGGGGG}EEEEE:::::::	chr12:42848480-42848703(+)$1	223	42	146	249.7499
HHHHHHH{EEEEE{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}EEEEEHHHHHHHHJJJJJJJ	chr7:148680746-148680990(+)$1	244	101	205	251.7500
hhhhhhh[ddddggggggg[bb!!dddd[eeeee[bb[bbnnnnnbb]bb22eeeee]dddd999999999bb22ggggggg333dddd]hhhhhhhh::::::	chrX:16930335-16930540(-)$1	205	101	205	203.6249
iiiii::::dddd[eeeee[a"""dddd[eeeee[bb[bbnnnnnbb]bb22eeeee]dddd55555a]eeeee22ddddBB}CCCZZZFFFFFF:::::::::	chrX:16930309-16930535(-)$1	226	96	200	203.6249
EEEEKKGGGGGGG{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}GGGGGGG}EEEEE:::::::	chr12:42848504-42848722(+)$1	218	18	122	249.7499
gggggg[bb[a!!eeeeebbpppppppbb]eeeee22a]bbggggggg22eeeee]dddd]bb]bb:::eeeeeccc[bb))))))))))ffffff''''''''	chr1:153758103-153758343(-)$1	240	47	151	253.6249
hhhhuuuuuuuuuuuuhhhhhhhh:::::ffffffqqqqqqqqffffffbb!!ggggggg[ffffff%%%%%%ccc"""ddddbbmmmmbb22dddd333ccc>	chr7:99928301-99928510(-)$1	209	11	115	230.3749
i[ccc"""ccc[dddd[bb[eeeee[dddd!!bboooooobb22dddd]eeeee]bb]dddd22ccc22ccc333iiiiiiiii333bb22bb]==========	chr17:43148771-43149015(+)$1	244	39	143	235.1250
HHHHHHHDDDD{GGGGGGG:::::::dddd!!cccmmmmccc22dddd::cccssssssssssccc:::::::::GGGGGGGDDDDZZZHHHHHHHH:::::::	chr14:21147564-21147769(+)$1	205	6	110	254.6249
HHHHH{GGGGGGG{FFFFFF::::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee:::::::::::::::FFFFFF}GGGGGGGHHHHHHHH@@@@@	chrX:117048165-117048418(-)$1	253	111	215	235.9999
hhhhhhh[ddddeeeee[a[eeeee[eeeee[cccmmmmccc]eeeee]eeeee]a]eeeee>>>>>>>>>>>>>>>>>>>>>>>ddddhhhhhhhh>>>>>>>	chr10:21770604-21770844(+)$1	240	41	145	230.1249
ggggggg[ddddgggggggccc++++++++++++++++++++++bb!!eeeeemmmmeeeee22bb55555ccc]ggggggg333ddddggggggga:::::::	chr14:50058853-50059098(-)$1	245	44	148	239.7499
DCCC{AGGGGGGG{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}GGGGGGG::::eeeeellle	chr20:16651190-16651395(-)$1	205	9	113	249.9999
iiiiiiidddd[ggggggg[eeeee[dddd[ddddmmmmdddd]dddd]eeeee>>>>>>>>>>>>>>>>>>>>>gggggggdddd333iiiiiiiiigggggg	chr14:100049310-100049556(+)$1	246	44	148	251.1249
IIIIIIIIKKCCCLLLFFFFFF:::::::hhhhhhhhmmmmhhhhhhhh:::::::::::::::::::::::::::::::::::::::::::ffffff^^^^^^	chr14:50553660-50553878(+)$1	218	40	144	246.2499
IIIIIIIDDDD{GGGGGGG::::::::::hhhhhhhhmmmmhhhhhhhhddddmmmmdddd::::::::::::::GGGGGGGDDDDZZZIIIIIIIII::::::	chr12:45274620-45274853(-)$1	233	102	206	225.1249
dd[dddd[eeeee[eeeee[a$$$$$ccc####eeeeevvvvvvvvvvvvveeeee4444ccc4444a]eeeee22eeeee88888888dddd]dddd::::::	chr12:97373209-97373439(-)$1	230	33	137	234.5000
eeeee55555bb]cccdddddddd:::::ffffffqqqqqqqqffffff:GGGGGGG}CCC@@@@@@@@@@@DDDDZZZFFFFFF:bb[dddd!!bbnnnnnbb	chr10:128609264-128609510(+)$1	246	112	216	220.9999
HHHHHHHDDDD{GGGGGGG:::::::dddd!!cccmmmmccc22dddd::cccssssssssssccc:::::::::GGGGGGGDDDDZZZHHHHHHHH:::::::	chr14:21147528-21147764(+)$1	236	42	146	254.6249
E{EEEEE{DDDDGGGGGGGccc!!ddddmmmmdddd22ccc:::bb!!cccqqqqqqqqccc22bb:::::::::GGGGGGGZZZDDDDEEEEE}EEEEE::::	chr19:6572888-6573107(-)$1	219	40	144	250.2499
DD{CCCLLLDDDD::ffffffvvvvvvvvvvvvvffffff::::bb!!eeeeemmmmeeeee22bb::::DDDDZZZCCCDDDDJJJJJJJJJJJ}HHHHHHHH	chr17:48463407-48463657(-)$1	250	51	155	251.9999
hhhhhh!!bb"""ddddcccpppppppccc]dddd]bb333hhhhhhhh:::::::::::FFFFFF::::CCCGGGGGGG{BB:::::ccc"""eeeee!!eee	chr11:64063470-64063707(+)$1	237	39	143	241.7499
ggggg!!dddd[ggggggg[bb####ffffff!!bb####ddddpppppppddddbbffffff88888888bb22gggggggdddd22ggggggg:::::::::	chr5:149477876-149478086(+)$1	210	92	196	230.3749
ggggg!!dddd[ggggggg[bb####ffffff!!bb####ddddpppppppddddbbffffff88888888bb22gggggggdddd22ggggggg:::::::::	chr5:149477886-149478099(+)$1	213	82	186	230.3749
HHHHHHHHOOOOOOGGGGGGG::::::::ffffffqqqqqqqqffffff:ddddoooooodddd::::::::::::GGGGGGG______HHHHHHHH:::::::	chr4:41305155-41305389(-)$1	234	35	139	217.1249
f!!ffffffccc"""eeeeexxxxxxxxxxxxxxxeeeee4444ccc22ffffff22ffffff22cccdddddddd22eeeee:::ccc!!bb^^^^^^^^^^^	chr14:90051965-90052203(+)$1	238	41	145	216.6249
HHHHHHH{EEEEE{GGGGGGG:::::dddd!!cccmmmmccc22ddddeeeeemmmmeeeee::::::::::::::GGGGGGG}EEEEEHHHHHHHH::::eee	chr7:148680841-148681044(+)$1	203	6	110	251.7500
E{EEEEE{DDDDGGGGGGGccc!!ddddmmmmdddd22ccc:::bb!!cccqqqqqqqqccc22bb:::::::::GGGGGGGZZZDDDDEEEEE}EEEEE::::	chr19:6572871-6573088(-)$1	217	21	125	250.2499

#DB
(((((((.(((((((((((.((..(((((((............((((....))))))))))).........))..)))))))...))))))))))))).....)	chr11:107955586-107955844(+)$1	1	54	158	239.9999
..))))))(((.((((.((.((((..((((..(((....)))..))))..)))).)).)))).))).....)))))).))))............(((.......	chr20:23438136-23438352(-)$1	1	31	135	228.3749
(((((..((((((.((((((((...(((....)))...)).)))......((((......))))................))).)))))).)))))))).....	chr2:42084392-42084603(-)$1	1	92	196	214.2500
((((((((..(((...((((((.......((((((((....))))))))...........................................((((((......	chr14:50553678-50553898(+)$1	1	22	126	246.2499
(((((((((((.(((((((.......((((..(((....)))..))))..(((..........))).........)))))))))))...)))))))).......	chr14:21147525-21147728(+)$1	1	45	149	254.6249
)).))).((((((.((((((((...(((....)))...)).)))......((((......))))................))).))))))...)))))......	chr2:42084381-42084592(-)$1	1	81	185	214.2500
(((((((.(((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).)))))))))))))(((((((	chr7:148680793-148681041(+)$1	1	54	158	251.7500
((((((.(((((((((.((.((((..((((..(((....)))..))))..)))).)).)))).......................)))))))))))))).....	chr20:23438122-23438336(-)$1	1	15	119	228.3749
(((((((.(((((((((((.((....(((.(((.((((.............))))..)))...))).....))..)))))))...)))))))))))))......	chr4:154187975-154188196(-)$1	1	35	139	226.2499
(((((((.....(((((((.((....(((.....((((.(((......))))))).....)))........))..))))))).......))))))).(((((((	chr13:49669490-49669733(+)$1	1	37	141	228.6250
((((.((.(((((((((((..........((((((((....))))))))((((....))))..............)))))(((((.(((......((((((...	chr18:12760679-12760914(+)$1	1	37	141	226.2499
(((((((.(((((((((((.((....(((.(((.((((.............))))..)))...))).....))..)))))))...)))))))))))))......	chr4:154187963-154188175(-)$1	1	14	118	226.2499
((((..(((((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).))))))).))))).......	chr12:42848480-42848703(+)$1	1	42	146	249.7499
(((((((.(((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).))))))))))))))))))))	chr7:148680746-148680990(+)$1	1	101	205	251.7500
(((((((.(((((((((((.((..((((.(((((.((.((.....)).))..))))).)))).........))..)))))))...)))).))))))))......	chrX:16930335-16930540(-)$1	1	101	205	203.6249
)))))....((((.(((((.(...((((.(((((.((.((.....)).))..))))).)))).....).)))))..)))))).)))...)))))).........	chrX:16930309-16930535(-)$1	1	96	200	203.6249
((((..(((((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).))))))).))))).......	chr12:42848504-42848722(+)$1	1	18	122	249.7499
((((((.((.(..(((((((.......)).)))))..).)))))))))..))))).)))).)).))...((((((((.((..........((((((........	chr1:153758103-153758343(-)$1	1	47	151	253.6249
((((............)))))))).....((((((........))))))((..(((((((.((((((......(((...((((((....))..))))...))).	chr7:99928301-99928510(-)$1	1	11	115	230.3749
(.(((...(((.((((.((.(((((.((((..((......))..)))).))))).)).))))..)))..)))...)))))))))...))..)).))))))))))	chr17:43148771-43149015(+)$1	1	39	143	235.1250
(((((((((((.(((((((.......((((..(((....)))..))))..(((..........))).........)))))))))))...)))))))).......	chr14:21147564-21147769(+)$1	1	6	110	254.6249
(((((.(((((((.((((((......((((..(((....)))..))))(((((....)))))...............)))))).))))))))))))))).....	chrX:117048165-117048418(-)$1	1	111	215	235.9999
(((((((.(((((((((.(.(((((.(((((.(((....))).))))).))))).).))))).......................)))))))))))).......	chr10:21770604-21770844(+)$1	1	41	145	230.1249
(((((((.((((((((((((((......................((..(((((....)))))..)).....))).)))))))...)))))))))))).......	chr14:50058853-50059098(-)$1	1	44	148	239.7499
((((.((((((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).)))))))....(((((...)	chr20:16651190-16651395(-)$1	1	9	113	249.9999
(((((((((((.(((((((.(((((.((((.((((....)))).)))).))))).....................)))))))))))...)))))))))((((((	chr14:100049310-100049556(+)$1	1	44	148	251.1249
((((((((..(((...((((((.......((((((((....))))))))...........................................((((((......	chr14:50553660-50553878(+)$1	1	40	144	246.2499
(((((((((((.(((((((..........((((((((....))))))))((((....))))..............)))))))))))...)))))))))......	chr12:45274620-45274853(-)$1	1	102	206	225.1249
((.((((.(((((.(((((.(.....(((....(((((.............)))))....)))....).)))))..)))))........)))).))))......	chr12:97373209-97373439(-)$1	1	33	137	234.5000
))))).....)).))))))))))).....((((((........)))))).))))))).)))...........))))...)))))).((.((((..((.....))	chr10:128609264-128609510(+)$1	1	112	216	220.9999
(((((((((((.(((((((.......((((..(((....)))..))))..(((..........))).........)))))))))))...)))))))).......	chr14:21147528-21147764(+)$1	1	42	146	254.6249
(.(((((.((((((((((((((..((((....))))..)))...((..(((........)))..)).........)))))))...))))))))).)))))....	chr19:6572888-6573107(-)$1	1	40	144	250.2499
((.(((...((((..((((((.............))))))....((..(((((....)))))..))....))))...)))))))))))))))))).))))))))	chr17:48463407-48463657(-)$1	1	51	155	251.9999
((((((..((...(((((((.......))).)))).))...))))))))...........))))))....((((((((((.((.....(((...(((((..(((	chr11:64063470-64063707(+)$1	1	39	143	241.7499
(((((..((((.(((((((.((....((((((..((....((((.......))))))))))))........))..)))))))))))..))))))).........	chr5:149477876-149478086(+)$1	1	92	196	230.3749
(((((..((((.(((((((.((....((((((..((....((((.......))))))))))))........))..)))))))))))..))))))).........	chr5:149477886-149478099(+)$1	1	82	186	230.3749
((((((((......(((((((........((((((........)))))).((((......))))............)))))))......)))))))).......	chr4:41305155-41305389(-)$1	1	35	139	217.1249
(..(((((((((...(((((...............)))))....)))..))))))..))))))..)))))))))))..)))))...(((..((...........	chr14:90051965-90052203(+)$1	1	41	145	216.6249
(((((((.(((((.(((((((.....((((..(((....)))..))))(((((....)))))..............))))))).)))))))))))))....(((	chr7:148680841-148681044(+)$1	1	6	110	251.7500
(.(((((.((((((((((((((..((((....))))..)))...((..(((........)))..)).........)))))))...))))))))).)))))....	chr19:6572871-6573088(-)$1	1	21	125	250.2499

#PSSM
g : 1.00	
c : 0.85	u : 0.07	g : 0.07	
u : 0.85	c : 0.12	a : 0.02	
g : 0.90	u : 0.10	
g : 0.95	c : 0.05	
u : 0.90	g : 0.07	c : 0.02	
c : 0.85	u : 0.10	g : 0.05	
c : 0.70	u : 0.27	a : 0.02	
g : 0.67	a : 0.24	c : 0.05	u : 0.02	
a : 0.97	c : 0.02	
g : 0.92	a : 0.07	
u : 1.00	
g : 0.85	a : 0.15	
c : 1.00	
a : 1.00	
g : 0.87	a : 0.07	u : 0.05	
u : 0.92	a : 0.05	c : 0.02	
g : 0.97	a : 0.02	
g : 1.00	
u : 0.97	a : 0.02	
g : 0.85	a : 0.12	c : 0.02	
u : 0.97	c : 0.02	
u : 1.00	
u : 1.00	
a : 0.97	g : 0.02	
c : 1.00	
a : 0.97	g : 0.02	
a : 0.95	g : 0.05	
c : 0.87	a : 0.05	g : 0.05	u : 0.02	
u : 0.90	g : 0.05	a : 0.05	
a : 0.90	u : 0.05	c : 0.02	g : 0.02	
a : 0.92	c : 0.05	g : 0.02	
u : 0.85	c : 0.10	g : 0.05	
u : 0.95	c : 0.05	
g : 0.87	a : 0.07	u : 0.02	c : 0.02	
a : 0.90	g : 0.05	u : 0.05	
u : 1.00	
c : 0.92	u : 0.05	g : 0.02	
a : 1.00	
c : 0.92	u : 0.07	
a : 1.00	
a : 0.97	u : 0.02	
c : 0.70	u : 0.15	a : 0.07	g : 0.07	
c : 0.95	u : 0.02	a : 0.02	
a : 0.97	c : 0.02	
g : 0.92	u : 0.02	a : 0.02	c : 0.02	
u : 0.95	c : 0.05	
u : 0.97	a : 0.02	
a : 1.00	
c : 0.77	u : 0.19	g : 0.02	
a : 0.90	g : 0.07	u : 0.02	
g : 0.95	u : 0.05	
a : 0.87	g : 0.12	
u : 0.92	c : 0.07	
u : 0.82	g : 0.10	c : 0.07	
u : 0.92	c : 0.05	g : 0.02	
c : 0.77	a : 0.10	u : 0.10	g : 0.02	
u : 0.87	g : 0.07	c : 0.02	a : 0.02	
u : 1.00	
u : 0.97	g : 0.02	
g : 0.87	a : 0.05	u : 0.05	c : 0.02	
u : 0.95	c : 0.05	
u : 0.97	c : 0.02	
c : 0.87	u : 0.12	
c : 0.82	u : 0.10	a : 0.07	
u : 0.97	c : 0.02	
u : 1.00	
c : 0.92	u : 0.07	
u : 1.00	
c : 0.97	u : 0.02	
c : 0.92	u : 0.07	
a : 0.97	u : 0.02	
c : 0.92	u : 0.07	
u : 0.90	c : 0.10	
c : 0.92	u : 0.07	
c : 0.97	u : 0.02	
c : 0.92	a : 0.02	g : 0.02	u : 0.02	
a : 0.95	u : 0.05	
c : 0.95	u : 0.05	
u : 1.00	
g : 1.00	
c : 0.95	u : 0.05	
u : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
c : 0.90	u : 0.07	g : 0.02	
u : 1.00	
u : 0.97	c : 0.02	
g : 0.95	u : 0.05	
a : 0.85	g : 0.12	c : 0.02	
c : 0.95	a : 0.05	
u : 0.95	c : 0.05	
a : 0.87	u : 0.10	U : 0.02	
g : 0.82	a : 0.10	u : 0.05	U : 0.02	
c : 0.77	u : 0.10	g : 0.05	U : 0.02	A : 0.02	a : 0.02	
c : 0.90	U : 0.02	A : 0.02	C : 0.02	a : 0.02	
u : 0.70	A : 0.12	U : 0.07	a : 0.07	C : 0.02	
u : 0.47	a : 0.24	A : 0.19	G : 0.07	
a : 0.40	A : 0.32	u : 0.22	C : 0.05	
A : 0.35	a : 0.35	U : 0.12	G : 0.07	u : 0.07	c : 0.02	
a : 0.42	A : 0.37	G : 0.10	U : 0.05	C : 0.02	u : 0.02	
A : 0.42	a : 0.40	C : 0.10	u : 0.02	c : 0.02	G : 0.02	
a : 0.45	A : 0.42	U : 0.12	

#score	9446.499999999998
#seq	40
#width	104
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_transcript_m3_run1.nuc.txt

#NT
UUUUUUUCACUUUGUUUGCUAGUCGACAGCAAGAAAUAGAAGAAAAACUCAUCGAGGAAGAAACAGCACGAAGAGUAGAAGAAUUGGUAGCAAAAAGGGUGGAGGAAGAACUGGAGAAAAGGAAGGAUGAAAUUGAACGAGAAGUUCUCCGAAGGGUGGAGGAAGCCAAACGCAUCAUGGAAAAGCAGUUGCUCGAAGAACUCGAGCGACAGAGACAAGCUGAGCUUGCCGCACAAAAAGCUAGAGAGGUAACGCUCGGUCGUUUGGAAAGUAGAGACAGUCCAUGGCAAAACUUUCAGUGUUG	chr13:107211692-107212027(-)$1	335	0	304	422.0000

#otherMatches

#Struct PSSM
GGGGGGGddddccc!!eeeeennnnneeeee333ccc333dddddddd[bb[dddd%%%%%%eeeee$$$$$ccc[dddd[ccc$$$$$eeeeemmmmeeeee55555ccc]dddd]ccc22eeeee4444dddd]bbdddd::::::::ggggggg&&&&&&&ddddoooooodddd7777777gggggggCCCKKJJJJJJJJJJ:::ccc%%%%%%ccc!!aqqqqqqqqa22ccc666666ccc:::bboooooobb:JJJJJJJJJJZZZCCC@@@@@@@@@@GGGGGGG?????EEEE	chr17:48823799-48824127(+)$1	328	6	310	422.0000
hhhhhhhh!!ccc[ffffffpppppppffffffccc22hhhhhhhhdddd[ccc[assssssssssa]ccc]dddd::::FFFFFFKKDDDDQQQQQQQQEEEEE{FFFFFF{BB{AMMMMEEEEE::::::::::::::::::gggggggnnnnnggggggg:DDDD:::bbtttttttttttbb:iiiiiiiiinnnnniiiiiiiii::dddd!!gggggggeeeeezzzzzzzzzzzzzzzzzeeeee]ggggggg]ddddccc!!bbmmmmbb22ccc:DDDD~~~~EEEEEYYA}BB}	chr13:107211692-107212027(-)$1	335	0	304	422.0000

#DB
((((((((((((((..(((((.....)))))...)))...))))((((.((.((((......(((((.....(((.((((.(((.....(((((....))))).....))).)))).)))..)))))....)))).))))))........(((((((.......((((......)))).......)))))))(((..((((((((((...(((......(((..(........)..)))......)))...((......)).))))))))))...)))..........))))))).....))))	chr17:48823799-48824127(+)$1	1	6	310	422.0000
((((((((..(((.((((((.......)))))))))..))))))))((((.(((.(..........).))).))))....((((((..((((........(((((.((((((.((.(....(((((..................(((((((.....))))))).((((...((...........)).(((((((((.....)))))))))..((((..((((((((((((.................))))).))))))).))))(((..((....))..))).))))....)))))..).)).	chr13:107211692-107212027(-)$1	1	0	304	422.0000

#PSSM
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	

#score	844.0
#seq	2
#width	304
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_UTR_m3_run1.nuc.txt

#NT
UGGGGCUGG	chr4:140651490-140651775(+)$1	285	206	215	16.0384
GGGGGCGGA	chr16:67977485-67977742(-)$1	257	104	113	17.1923
gggggucgg	chr6:36098133-36098453(+)$1	320	149	158	15.1730
GGGGGCCGG	chr6:32157586-32157918(-)$1	332	18	27	18.8269
gggggcggg	chr9:35690593-35690886(-)$1	293	145	154	21.4230
gggcgcggg	chr12:58005533-58005817(+)$1	284	121	130	17.5769
ggcggcugg	chr14:23791026-23791299(+)$1	273	32	41	15.4615
GGGGGCAGG	chr8:144687540-144687864(-)$1	324	129	138	18.8269
GUGGGCGGG	chr19:10464578-10464833(-)$1	255	116	125	16.9038
GGGGGUGGG	chr16:67977139-67977392(-)$1	253	185	194	17.7692
GGGGGCGUG	chr2:242707479-242707735(+)$1	256	92	101	16.8076
gggggcggg	chr17:36955690-36955949(-)$1	259	45	54	21.4230
GGGGGCGGG	chr17:4851244-4851532(-)$1	288	40	49	21.4230
GGGAGCUGG	chr22:38203065-38203279(+)$1	214	196	205	16.1346
GGGGGCUGC	chr8:27468385-27468649(-)$1	264	5	14	16.0384
GGGAGCUGG	chr22:38203128-38203345(+)$1	217	133	142	16.1346
GGGGGCUGC	chr19:18547563-18547883(-)$1	320	256	265	16.0384
GGGCGCUGG	chr16:8951958-8952225(-)$1	267	104	113	16.2307
GGAGGCGGG	chr8:145168988-145169317(+)$1	329	200	209	16.9038
GGGGGCGGG	chr6:149639415-149639679(+)$1	264	123	132	21.4230
GGGGGCUGG	chr11:46403264-46403531(+)$1	267	95	104	20.0769
GGAGGCUGG	chr22:35743540-35743848(+)$1	308	62	71	15.5576
GGGGGUGGG	chr6:31867287-31867553(-)$1	266	235	244	17.7692
GGGGGUGGG	chr8:144917570-144917871(-)$1	301	221	230	17.7692
GGGGGCGGG	chr19:50880381-50880655(+)$1	274	219	228	21.4230
GGGGGCGGG	chr14:103987666-103987979(-)$1	313	133	142	21.4230
GGGAGCUGG	chr19:49964694-49965003(+)$1	309	247	256	16.1346
GGGGGCGUG	chr2:220151224-220151487(+)$1	263	117	126	16.8076
gggggcggg	chr17:36955857-36956130(-)$1	273	226	235	21.4230
GGGGGCUGG	chr19:49605876-49606148(+)$1	272	44	53	20.0769
gcgggcugg	chr17:42276986-42277253(-)$1	267	88	97	15.4615
GGGGGCGGC	chr8:145691473-145691722(+)$1	249	218	227	17.3846
GGGGACGGG	chr22:50945405-50945665(-)$1	260	48	57	16.6153
GGGGGUGGG	chr12:123465318-123465588(+)$1	270	212	221	17.7692
UGGGGCAGG	chr16:28847496-28847746(+)$1	250	55	64	14.7884
gggggcggg	chr4:52709643-52709970(+)$1	327	284	293	21.4230
UGGGGCUGG	chr16:2648410-2648688(+)$1	278	110	119	16.0384
GGGGGCGGA	chr16:67977586-67977830(-)$1	244	192	201	17.1923
GUGGGCGGG	chr11:65374346-65374609(-)$1	263	30	39	16.9038
GGGGGUGGG	chr9:139904715-139905014(-)$1	299	50	59	17.7692
GGGGGUGGG	chr19:41770997-41771301(+)$1	304	125	134	17.7692
gggggccgg	chr19:42788122-42788370(+)$1	248	1	10	18.8269
uggggcugg	chr9:139917833-139918125(-)$1	292	157	166	16.0384
GGGGGCGGG	chr9:99539971-99540261(-)$1	290	7	16	21.4230
GGGUGCUGG	chr12:56554583-56554811(+)$1	228	102	111	15.9423
gggcgcggg	chr6:33588698-33589012(+)$1	314	283	292	17.5769
GGGGGCGGG	chr19:50880576-50880848(+)$1	272	24	33	21.4230
GGGGGCAGG	chr19:58991583-58991819(-)$1	236	173	182	18.8269
GGGGGCGGC	chr8:145691604-145691892(+)$1	288	87	96	17.3846
AGGGGCUGG	chr11:18034123-18034463(-)$1	340	48	57	15.7500
GGGCGCGGG	chr10:102759112-102759359(+)$1	247	3	12	17.5769

#otherMatches

#Struct PSSM
====]iiii	chr3:176914140-176914419(-)$1	279	123	132	17.0961
dbbcccccc	chr4:140651490-140651775(+)$1	285	206	215	16.0384
ffffff[cc	chr16:67977485-67977742(-)$1	257	104	113	17.1923
ggg!!dddd	chr6:36098133-36098453(+)$1	320	149	158	15.1730
JJJJJJJJJ	chr6:32157586-32157918(-)$1	332	18	27	18.8269
ddd]ccc::	chr9:35690593-35690886(-)$1	293	145	154	21.4230
ccc]ggggg	chr12:58005533-58005817(+)$1	284	121	130	17.5769
gggnnnnng	chr14:23791026-23791299(+)$1	273	32	41	15.4615
iiiii]ddd	chr8:144687540-144687864(-)$1	324	129	138	18.8269
rrrrrrbb2	chr19:10464578-10464833(-)$1	255	116	125	16.9038
DDDD}BBa[	chr16:67977139-67977392(-)$1	253	185	194	17.7692
eeeebbppp	chr2:242707479-242707735(+)$1	256	92	101	16.8076
lllbb]a]g	chr17:36955690-36955949(-)$1	259	45	54	21.4230
{A=======	chr17:4851244-4851532(-)$1	288	40	49	21.4230
eellleeee	chr22:38203065-38203279(+)$1	214	196	205	16.1346
f"""fffff	chr8:27468385-27468649(-)$1	264	5	14	16.0384
eellleeee	chr22:38203128-38203345(+)$1	217	133	142	16.1346
ffff[gggg	chr19:18547563-18547883(-)$1	320	256	265	16.0384
333ccc]dd	chr16:8951958-8952225(-)$1	267	104	113	16.2307
:eeeeeddd	chr8:145168988-145169317(+)$1	329	200	209	16.9038
=========	chr6:149639415-149639679(+)$1	264	123	132	21.4230
e]bbddddg	chr11:46403264-46403531(+)$1	267	95	104	20.0769
gggggggcc	chr22:35743540-35743848(+)$1	308	62	71	15.5576
=======44	chr6:31867287-31867553(-)$1	266	235	244	17.7692
GGGGG{DDD	chr8:144917570-144917871(-)$1	301	221	230	17.7692
::::ccc[e	chr19:50880381-50880655(+)$1	274	219	228	21.4230
fffffbbbb	chr14:103987666-103987979(-)$1	313	133	142	21.4230
qqqiiiiii	chr19:49964694-49965003(+)$1	309	247	256	16.1346
:::dddd[f	chr2:220151224-220151487(+)$1	263	117	126	16.8076
g:GGGGGGG	chr17:36955857-36956130(-)$1	273	226	235	21.4230
::::eeeee	chr19:49605876-49606148(+)$1	272	44	53	20.0769
bbqqqqqqq	chr17:42276986-42277253(-)$1	267	88	97	15.4615
mmmmfffff	chr8:145691473-145691722(+)$1	249	218	227	17.3846
dddoooooo	chr22:50945405-50945665(-)$1	260	48	57	16.6153
E}FFFFFFB	chr12:123465318-123465588(+)$1	270	212	221	17.7692
eeeeBB{DD	chr16:28847496-28847746(+)$1	250	55	64	14.7884
~~~~CCC}A	chr4:52709643-52709970(+)$1	327	284	293	21.4230
FF{FFFFFF	chr16:2648410-2648688(+)$1	278	110	119	16.0384
FEEEEEZZZ	chr16:67977586-67977830(-)$1	244	192	201	17.1923
[ddddaddd	chr11:65374346-65374609(-)$1	263	30	39	16.9038
a[ddddlll	chr9:139904715-139905014(-)$1	299	50	59	17.7692
ff:::::::	chr19:41770997-41771301(+)$1	304	125	134	17.7692
:CCC{CCCE	chr19:42788122-42788370(+)$1	248	1	10	18.8269
d]eeeee22	chr9:139917833-139918125(-)$1	292	157	166	16.0384
eeeeeeeee	chr9:99539971-99540261(-)$1	290	7	16	21.4230
:bb[ggggg	chr12:56554583-56554811(+)$1	228	102	111	15.9423
eeee]a:::	chr6:33588698-33589012(+)$1	314	283	292	17.5769
LEEEEE:ff	chr19:50880576-50880848(+)$1	272	24	33	21.4230
BBDDDD}BB	chr19:58991583-58991819(-)$1	236	173	182	18.8269
gggg=====	chr8:145691604-145691892(+)$1	288	87	96	17.3846
{JJJJJJJJ	chr11:18034123-18034463(-)$1	340	48	57	15.7500
CCC{BBKKC	chr10:102759112-102759359(+)$1	247	3	12	17.5769

#DB
)))).))))	chr3:176914140-176914419(-)$1	1	123	132	17.0961
(((((((((	chr4:140651490-140651775(+)$1	1	206	215	16.0384
((((((.((	chr16:67977485-67977742(-)$1	1	104	113	17.1923
(((..((((	chr6:36098133-36098453(+)$1	1	149	158	15.1730
(((((((((	chr6:32157586-32157918(-)$1	1	18	27	18.8269
))).)))..	chr9:35690593-35690886(-)$1	1	145	154	21.4230
))).)))))	chr12:58005533-58005817(+)$1	1	121	130	17.5769
(((.....)	chr14:23791026-23791299(+)$1	1	32	41	15.4615
))))).)))	chr8:144687540-144687864(-)$1	1	129	138	18.8269
......)).	chr19:10464578-10464833(-)$1	1	116	125	16.9038
)))).))(.	chr16:67977139-67977392(-)$1	1	185	194	17.7692
((((((...	chr2:242707479-242707735(+)$1	1	92	101	16.8076
...)).).)	chr17:36955690-36955949(-)$1	1	45	54	21.4230
.((((((((	chr17:4851244-4851532(-)$1	1	40	49	21.4230
((...))))	chr22:38203065-38203279(+)$1	1	196	205	16.1346
(...(((((	chr8:27468385-27468649(-)$1	1	5	14	16.0384
((...))))	chr22:38203128-38203345(+)$1	1	133	142	16.1346
((((.((((	chr19:18547563-18547883(-)$1	1	256	265	16.0384
...))).))	chr16:8951958-8952225(-)$1	1	104	113	16.2307
.((((((((	chr8:145168988-145169317(+)$1	1	200	209	16.9038
)))))))))	chr6:149639415-149639679(+)$1	1	123	132	21.4230
).))(((((	chr11:46403264-46403531(+)$1	1	95	104	20.0769
(((((((((	chr22:35743540-35743848(+)$1	1	62	71	15.5576
)))))))..	chr6:31867287-31867553(-)$1	1	235	244	17.7692
(((((.(((	chr8:144917570-144917871(-)$1	1	221	230	17.7692
....(((.(	chr19:50880381-50880655(+)$1	1	219	228	21.4230
)))))))))	chr14:103987666-103987979(-)$1	1	133	142	21.4230
...))))))	chr19:49964694-49965003(+)$1	1	247	256	16.1346
...((((.(	chr2:220151224-220151487(+)$1	1	117	126	16.8076
).)))))))	chr17:36955857-36956130(-)$1	1	226	235	21.4230
....(((((	chr19:49605876-49606148(+)$1	1	44	53	20.0769
((.......	chr17:42276986-42277253(-)$1	1	88	97	15.4615
....)))))	chr8:145691473-145691722(+)$1	1	218	227	17.3846
(((......	chr22:50945405-50945665(-)$1	1	48	57	16.6153
).)))))))	chr12:123465318-123465588(+)$1	1	212	221	17.7692
))))((.((	chr16:28847496-28847746(+)$1	1	55	64	14.7884
....))).)	chr4:52709643-52709970(+)$1	1	284	293	21.4230
((.((((((	chr16:2648410-2648688(+)$1	1	110	119	16.0384
))))))...	chr16:67977586-67977830(-)$1	1	192	201	17.1923
.((((((((	chr11:65374346-65374609(-)$1	1	30	39	16.9038
(.((((...	chr9:139904715-139905014(-)$1	1	50	59	17.7692
)).......	chr19:41770997-41771301(+)$1	1	125	134	17.7692
.(((.((((	chr19:42788122-42788370(+)$1	1	1	10	18.8269
).)))))..	chr9:139917833-139918125(-)$1	1	157	166	16.0384
(((((((((	chr9:99539971-99540261(-)$1	1	7	16	21.4230
.((.(((((	chr12:56554583-56554811(+)$1	1	102	111	15.9423
)))).)...	chr6:33588698-33589012(+)$1	1	283	292	17.5769
.(((((.((	chr19:50880576-50880848(+)$1	1	24	33	21.4230
)))))).))	chr19:58991583-58991819(-)$1	1	173	182	18.8269
))))(((((	chr8:145691604-145691892(+)$1	1	87	96	17.3846
.((((((((	chr11:18034123-18034463(-)$1	1	48	57	15.7500
(((.((..(	chr10:102759112-102759359(+)$1	1	3	12	17.5769

#PSSM
G : 0.69	g : 0.19	U : 0.05	c : 0.01	u : 0.01	A : 0.01	
G : 0.73	g : 0.21	U : 0.03	c : 0.01	
G : 0.73	g : 0.21	A : 0.03	c : 0.01	
G : 0.65	g : 0.19	A : 0.05	c : 0.03	C : 0.03	U : 0.01	
G : 0.75	g : 0.23	A : 0.01	
C : 0.65	c : 0.21	U : 0.11	u : 0.01	
G : 0.44	U : 0.24	g : 0.13	u : 0.05	A : 0.05	c : 0.03	C : 0.01	
G : 0.73	g : 0.23	U : 0.03	
G : 0.65	g : 0.23	C : 0.07	A : 0.03	

#score	929.1923076923082
#seq	52
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_transcript_m2_run1.nuc.txt

#NT
GCAGGCAGGGGCAGGAG	chr10:121631567-121631887(-)$1	320	22	39	15.4736
GCUCGGAGGGUGUGGUG	chr17:80050787-80051047(-)$1	260	167	184	15.8245
CCGGCGUUGGGGCGGGG	chr21:47648431-47648684(-)$1	253	124	141	14.8596
gacaggugggggagggg	chr19:56652943-56653218(+)$1	275	101	118	19.2456
GCUGGUUGGGAGAGAGG	chr7:100174287-100174521(-)$1	234	43	60	16.7894
GCUCCGUGGGGGAGGGG	chr17:48797125-48797396(+)$1	271	98	115	19.5964
GCUugguggugguggug	chr12:50480064-50480323(+)$1	259	195	212	17.3157
GCUAGGUGUGGGGGUGG	chr22:20101510-20101781(-)$1	271	81	98	16.1754
GCCGGGCGGGGCUGGAG	chr9:135978954-135979214(-)$1	260	89	106	19.5964
GGAGGCCGGGGCCGGGG	chr1:206775495-206775794(-)$1	299	129	146	16.6140
GCUGGGCCGGGCUAGGG	chr14:21550137-21550385(+)$1	248	66	83	18.4561
CCUGGGGGUGGGCAGGG	chr16:1828215-1828500(-)$1	285	110	127	15.6491
GGUGGAAGGGUCUGGGG	chr11:62340998-62341290(-)$1	292	180	197	16.5263
gccgggcggggguugag	chr15:73925277-73925531(-)$1	254	88	105	18.0175
ccugggggguccugggg	chr21:44488399-44488690(-)$1	291	127	144	14.3333
gcugccagcgggugggg	chr9:136652795-136653057(-)$1	262	152	169	17.3157
gccgggcgggcgggagg	chr2:61764436-61764686(-)$1	250	35	52	15.2982
GCUGGUGGGGCCUGGGG	chr19:2126960-2127204(-)$1	244	182	199	18.9824
GAUGGCUGGGAAUGGGG	chrX:118986511-118986792(-)$1	281	113	130	17.8421
GCUGGAGGAGGGUGAGC	chr17:80042464-80042703(-)$1	239	18	35	13.2807
GCUUGGGGAGGCAGGGG	chr17:72862287-72862602(-)$1	315	55	72	16.7017
GCCUGGUUAGGGUGGGG	chr1:44071655-44071960(+)$1	305	22	39	16.2631
GUGAGGUGGGGCUGUGG	chr8:145113622-145113912(-)$1	290	241	258	14.7719
GCUGCCUGGGGAUGGGG	chr12:57581192-57581460(+)$1	268	54	71	19.9473
GCUGGGGGGCAGGUGGG	chr17:80050585-80050864(-)$1	279	117	134	14.1578
UCAGCCUGGGGGCGGGG	chr2:21266016-21266276(-)$1	260	101	118	15.5614
gcaggcugggggccugg	chr17:65240971-65241303(-)$1	332	159	176	15.5614
GCUGGGUGGGGGUGGGG	chr3:184032410-184032675(+)$1	265	242	259	28.9824
CAUGUGUUGGGGUGGGG	chr3:52831902-52832118(+)$1	216	142	159	15.8245
GGGGGAUGGGGGGGGGG	chr1:91487052-91487293(-)$1	241	85	102	19.9473
GAUGGGUGGGGCCGGGA	chr14:105856108-105856377(+)$1	269	26	43	18.9824
CCUGGCUGGGGACAGGG	chr21:46895393-46895625(+)$1	232	183	200	15.5614
GGCGGGAGGGGCUGGGC	chr1:26232579-26232850(-)$1	271	30	47	16.1754
GAUGGGGAGGGCAGGGA	chr20:39980846-39981122(+)$1	276	65	82	13.5438
GAGGGGAGGGGGCUGGG	chr1:6269181-6269443(+)$1	262	92	109	18.0175
GCCGAGAGGGGGUUGAG	chr22:29664419-29664787(+)$1	368	17	34	13.9824
GGCGGGUUGGGGCGGGG	chr20:62370415-62370638(+)$1	223	74	91	19.2456
GUUGGGAGGAAGUGGGG	chr9:130214299-130214570(+)$1	271	207	224	16.1754
GAUGGGUGAGGGUUGUG	chr18:47803014-47803263(-)$1	249	87	104	16.2631
GAGAGGAGGGGGCGGGG	chr1:21113494-21113773(-)$1	279	189	206	17.7543
UCUGGAUAGGGGGAGGG	chr16:3721355-3721618(-)$1	263	122	139	14.1578
GCUGGAGGGCGGCGGGG	chr18:3247808-3248124(+)$1	316	161	178	19.3333
GCUGGGGCUUGGUGGGG	chr16:4715172-4715427(+)$1	255	64	81	16.2631
gcuggaggagggcgggg	chr1:113249529-113249786(-)$1	257	5	22	20.2105
AAGGGAUGGGGGUGUGG	chr2:75101026-75101271(+)$1	245	81	98	14.8596
GCCcggccgggcugggg	chr20:40246721-40246961(-)$1	240	125	142	16.0877
CCUGGGCGGGGCUGGAG	chr16:599807-600074(+)$1	267	197	214	18.4561
GCUGGAGGGGGCUCUGG	chr15:89871725-89872004(-)$1	279	96	113	16.0000
GAUGGGCGGGAGAGGGG	chr16:4727480-4727726(+)$1	246	117	134	19.4210
Gggggcuggggcugggg	chr17:21205276-21205541(+)$1	265	81	98	20.2105
GAUGGCUGUGGGGGGUG	chr20:25440078-25440374(-)$1	296	40	57	15.3859
UCUGGAUUGGGGAUGGG	chr1:40771718-40771962(-)$1	244	17	34	14.6842
CCAGAGUGAGGCUGGGG	chr21:46912925-46913173(+)$1	248	3	20	14.0701
ACGGGUUCUGGGUGGGG	chr16:28847467-28847751(+)$1	284	97	114	13.4561
UCGGGGUCGGGGUCGGG	chr21:46293153-46293482(-)$1	329	124	141	16.3508
GUAGGGUGGGGGGGGUG	chr20:2819670-2819922(-)$1	252	172	189	18.0175

#otherMatches

#Struct PSSM
ccc55555ffffffddd	chr3:9438891-9439175(-)$1	284	63	80	15.9122
{A:ffffffbb[ccc[c	chr10:121631567-121631887(-)$1	320	22	39	15.4736
bb####ffffffeeeee	chr17:80050787-80051047(-)$1	260	167	184	15.8245
JJJJ{EEEEEFFFFFFK	chr21:47648431-47648684(-)$1	253	124	141	14.8596
DDDKKFFFFFF:ddddq	chr19:56652943-56653218(+)$1	275	101	118	19.2456
ggggg!!dddd[a[bb[	chr7:100174287-100174521(-)$1	234	43	60	16.7894
!ddddqqqqqqqqdddd	chr17:48797125-48797396(+)$1	271	98	115	19.5964
meeeee]ddddbb4444	chr12:50480064-50480323(+)$1	259	195	212	17.3157
!dddd[eeeeerrrrrr	chr22:20101510-20101781(-)$1	271	81	98	16.1754
]ddddBBEEEEE{BB{B	chr9:135978954-135979214(-)$1	260	89	106	19.5964
"""cccmmmmccc22dd	chr1:206775495-206775794(-)$1	299	129	146	16.6140
cccc::::CCCKKJJJJ	chr14:21550137-21550385(+)$1	248	66	83	18.4561
iiiiiiiii"""bbddd	chr16:1828215-1828500(-)$1	285	110	127	15.6491
ccc333a]ffffff]cc	chr11:62340998-62341290(-)$1	292	180	197	16.5263
ccc22bb22a22eeeee	chr15:73925277-73925531(-)$1	254	88	105	18.0175
hhhhh:::a[=======	chr21:44488399-44488690(-)$1	291	127	144	14.3333
ccc]eeeee::::::::	chr9:136652795-136653057(-)$1	262	152	169	17.3157
!ccc[bb[cccqqqqqq	chr2:61764436-61764686(-)$1	250	35	52	15.2982
dd[eeeee=========	chr19:2126960-2127204(-)$1	244	182	199	18.9824
b]ffffff333bb]ddd	chrX:118986511-118986792(-)$1	281	113	130	17.8421
mmmeeeee:eeeeebba	chr17:80042464-80042703(-)$1	239	18	35	13.2807
[ccclllccc]eeeee]	chr17:72862287-72862602(-)$1	315	55	72	16.7017
22gggggggccc:====	chr1:44071655-44071960(+)$1	305	22	39	16.2631
gg22ccc]iiiiiiiii	chr8:145113622-145113912(-)$1	290	241	258	14.7719
555eeeeeccc]ccc::	chr12:57581192-57581460(+)$1	268	54	71	19.9473
:hhhhhhhh[dddd[a!	chr17:80050585-80050864(-)$1	279	117	134	14.1578
2bbccc]bbIIIIIIII	chr2:21266016-21266276(-)$1	260	101	118	15.5614
DDDDAYYEEEEEccc[d	chr17:65240971-65241303(-)$1	332	159	176	15.5614
cc]ccc]==========	chr3:184032410-184032675(+)$1	265	242	259	28.9824
dd]bbffffff]a]fff	chr3:52831902-52832118(+)$1	216	142	159	15.8245
WWWWWWWWWWWWWWWWW	chr1:91487052-91487293(-)$1	241	85	102	19.9473
:::::::EEEEE{DDDD	chr14:105856108-105856377(+)$1	269	26	43	18.9824
c]ddddccc4444eeee	chr21:46895393-46895625(+)$1	232	183	200	15.5614
cccpppppppccc]ggg	chr1:26232579-26232850(-)$1	271	30	47	16.1754
nndddd333ccc:::::	chr20:39980846-39981122(+)$1	276	65	82	13.5438
HHHHHHDDDDYYCCC}A	chr1:6269181-6269443(+)$1	262	92	109	18.0175
FFFFFF{A{EEEEEKKA	chr22:29664419-29664787(+)$1	368	17	34	13.9824
iiiiiiii:DDDDgggg	chr20:62370415-62370638(+)$1	223	74	91	19.2456
JJJJJYYBBYYDDDDFF	chr9:130214299-130214570(+)$1	271	207	224	16.1754
ffffff[ffffff[ccc	chr18:47803014-47803263(-)$1	249	87	104	16.2631
===========hhhhhh	chr1:21113494-21113773(-)$1	279	189	206	17.7543
cccooooooccc4444d	chr16:3721355-3721618(-)$1	263	122	139	14.1578
bb]dddddddd[ddddl	chr18:3247808-3248124(+)$1	316	161	178	19.3333
ccc]ffffffccc[ggg	chr16:4715172-4715427(+)$1	255	64	81	16.2631
hhhhhhhh[ddddeeee	chr1:113249529-113249786(-)$1	257	5	22	20.2105
eeeeccc[ccc======	chr2:75101026-75101271(+)$1	245	81	98	14.8596
iiiiiiii]ccc]ccc6	chr20:40246721-40246961(-)$1	240	125	142	16.0877
eeeee[eeeee[bb###	chr16:599807-600074(+)$1	267	197	214	18.4561
]bb]dddd333hhhhhh	chr15:89871725-89872004(-)$1	279	96	113	16.0000
pppiiiiiiiii]a]ee	chr16:4727480-4727726(+)$1	246	117	134	19.4210
###gggggggffffffc	chr17:21205276-21205541(+)$1	265	81	98	20.2105
FFFFFPPPPPPPBB{BB	chr20:25440078-25440374(-)$1	296	40	57	15.3859
eeee333dddd::DDDD	chr1:40771718-40771962(-)$1	244	17	34	14.6842
:::::::::========	chr21:46912925-46913173(+)$1	248	3	20	14.0701
ccEEEEEJJJJJJJJJJ	chr16:28847467-28847751(+)$1	284	97	114	13.4561
===!!ffffff[dddd[	chr21:46293153-46293482(-)$1	329	124	141	16.3508
nnnnccc]ccc333ccc	chr20:2819670-2819922(-)$1	252	172	189	18.0175

#DB
))).....)))))))))	chr3:9438891-9439175(-)$1	1	63	80	15.9122
.(.((((((((.(((.(	chr10:121631567-121631887(-)$1	1	22	39	15.4736
((....(((((((((((	chr17:80050787-80051047(-)$1	1	167	184	15.8245
((((.(((((((((((.	chr21:47648431-47648684(-)$1	1	124	141	14.8596
(((..((((((.((((.	chr19:56652943-56653218(+)$1	1	101	118	19.2456
(((((..((((.(.((.	chr7:100174287-100174521(-)$1	1	43	60	16.7894
.((((........))))	chr17:48797125-48797396(+)$1	1	98	115	19.5964
.))))).))))))....	chr12:50480064-50480323(+)$1	1	195	212	17.3157
.((((.(((((......	chr22:20101510-20101781(-)$1	1	81	98	16.1754
.))))(((((((.((.(	chr9:135978954-135979214(-)$1	1	89	106	19.5964
...(((....)))..))	chr1:206775495-206775794(-)$1	1	129	146	16.6140
))))....(((..((((	chr14:21550137-21550385(+)$1	1	66	83	18.4561
(((((((((...(((((	chr16:1828215-1828500(-)$1	1	110	127	15.6491
)))...).)))))).))	chr11:62340998-62341290(-)$1	1	180	197	16.5263
)))..))..)..)))))	chr15:73925277-73925531(-)$1	1	88	105	18.0175
)))))...(.(((((((	chr21:44488399-44488690(-)$1	1	127	144	14.3333
))).)))))........	chr9:136652795-136653057(-)$1	1	152	169	17.3157
.(((.((.(((......	chr2:61764436-61764686(-)$1	1	35	52	15.2982
((.((((((((((((((	chr19:2126960-2127204(-)$1	1	182	199	18.9824
).))))))...)).)))	chrX:118986511-118986792(-)$1	1	113	130	17.8421
...))))).((((((((	chr17:80042464-80042703(-)$1	1	18	35	13.2807
.(((...))).))))).	chr17:72862287-72862602(-)$1	1	55	72	16.7017
..)))))))))).((((	chr1:44071655-44071960(+)$1	1	22	39	16.2631
))..))).)))))))))	chr8:145113622-145113912(-)$1	1	241	258	14.7719
...)))))))).)))..	chr12:57581192-57581460(+)$1	1	54	71	19.9473
.((((((((.((((.(.	chr17:80050585-80050864(-)$1	1	117	134	14.1578
.))))).))))))))))	chr2:21266016-21266276(-)$1	1	101	118	15.5614
)))))..)))))(((.(	chr17:65240971-65241303(-)$1	1	159	176	15.5614
)).))).))))))))))	chr3:184032410-184032675(+)$1	1	242	259	28.9824
)).)))))))).).)))	chr3:52831902-52832118(+)$1	1	142	159	15.8245
.................	chr1:91487052-91487293(-)$1	1	85	102	19.9473
.......(((((.((((	chr14:105856108-105856377(+)$1	1	26	43	18.9824
).)))))))....))))	chr21:46895393-46895625(+)$1	1	183	200	15.5614
(((.......))).)))	chr1:26232579-26232850(-)$1	1	30	47	16.1754
..))))...))).....	chr20:39980846-39981122(+)$1	1	65	82	13.5438
))))))))))..))).)	chr1:6269181-6269443(+)$1	1	92	109	18.0175
((((((.(.(((((..(	chr22:29664419-29664787(+)$1	1	17	34	13.9824
)))))))).((((((((	chr20:62370415-62370638(+)$1	1	74	91	19.2456
)))))..))..))))))	chr9:130214299-130214570(+)$1	1	207	224	16.1754
((((((.((((((.(((	chr18:47803014-47803263(-)$1	1	87	104	16.2631
(((((((((((((((((	chr1:21113494-21113773(-)$1	1	189	206	17.7543
(((......)))....)	chr16:3721355-3721618(-)$1	1	122	139	14.1578
)).))))((((.((((.	chr18:3247808-3248124(+)$1	1	161	178	19.3333
))).))))))(((.(((	chr16:4715172-4715427(+)$1	1	64	81	16.2631
((((((((.((((((((	chr1:113249529-113249786(-)$1	1	5	22	20.2105
(((((((.(((((((((	chr2:75101026-75101271(+)$1	1	81	98	14.8596
)))))))).))).))).	chr20:40246721-40246961(-)$1	1	125	142	16.0877
(((((.(((((.((...	chr16:599807-600074(+)$1	1	197	214	18.4561
.)).))))...))))))	chr15:89871725-89872004(-)$1	1	96	113	16.0000
...))))))))).).))	chr16:4727480-4727726(+)$1	1	117	134	19.4210
...((((((((((((((	chr17:21205276-21205541(+)$1	1	81	98	20.2105
(((((.......((.((	chr20:25440078-25440374(-)$1	1	40	57	15.3859
))))...))))..((((	chr1:40771718-40771962(-)$1	1	17	34	14.6842
.........((((((((	chr21:46912925-46913173(+)$1	1	3	20	14.0701
))(((((((((((((((	chr16:28847467-28847751(+)$1	1	97	114	13.4561
(((..((((((.((((.	chr21:46293153-46293482(-)$1	1	124	141	16.3508
....))).)))...)))	chr20:2819670-2819922(-)$1	1	172	189	18.0175

#PSSM
G : 0.66	C : 0.10	g : 0.10	U : 0.07	A : 0.03	c : 0.01	
C : 0.54	A : 0.17	c : 0.10	G : 0.08	U : 0.05	a : 0.01	g : 0.01	
U : 0.52	G : 0.14	C : 0.10	A : 0.08	c : 0.05	u : 0.05	a : 0.01	g : 0.01	
G : 0.68	g : 0.12	A : 0.07	C : 0.03	U : 0.03	a : 0.01	u : 0.01	c : 0.01	
G : 0.70	g : 0.15	C : 0.07	A : 0.03	c : 0.01	U : 0.01	
G : 0.50	A : 0.14	C : 0.12	g : 0.10	U : 0.05	c : 0.05	a : 0.01	
U : 0.43	G : 0.15	A : 0.14	C : 0.08	u : 0.07	c : 0.05	g : 0.03	a : 0.01	
G : 0.61	g : 0.15	U : 0.08	C : 0.07	A : 0.05	c : 0.01	
G : 0.64	g : 0.14	U : 0.08	A : 0.08	c : 0.01	a : 0.01	
G : 0.75	g : 0.14	u : 0.03	C : 0.03	A : 0.01	U : 0.01	
G : 0.68	g : 0.14	A : 0.08	U : 0.03	c : 0.03	C : 0.01	
G : 0.52	C : 0.24	g : 0.12	c : 0.05	A : 0.05	
U : 0.40	C : 0.17	A : 0.14	u : 0.10	G : 0.10	c : 0.03	a : 0.01	g : 0.01	
G : 0.63	g : 0.14	U : 0.08	A : 0.07	C : 0.03	u : 0.01	c : 0.01	
G : 0.70	g : 0.14	U : 0.07	A : 0.03	C : 0.01	a : 0.01	u : 0.01	
G : 0.68	g : 0.14	A : 0.07	U : 0.07	u : 0.01	a : 0.01	
G : 0.75	g : 0.17	C : 0.03	A : 0.03	

#score	963.4912280701766
#seq	57
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_transcript_m1_run2.nuc.txt

#NT
auuuaaaauuuuuuguagagacggcgucuuacuauguuggccaggcuggucucagacuccugac	chr4:1895820-1896128(+)$1	308	30	94	94.9687
cuuuuuuuuuuuuuuuugagacagagucuugcucuguugaccaggcuggagugcaguggcacga	chr11:101989155-101989418(+)$1	263	40	104	81.0625
uuuuuguauuuuuaguagagaugggguuucaccauguuggccaggcuggggccuuaaacuccug	chr5:133714051-133714321(+)$1	270	66	130	79.6562
uuuuuaaauuuuauguagagacagggucucguuauguugcucaggcuggucuugaacuccuggc	chr13:33279949-33280205(+)$1	256	21	85	100.6718
uuuuuuuuuuuuuuuuugagacagagucuugcccugucacccaugcuggagugcaguugcguga	chr9:33830069-33830361(+)$1	292	87	151	79.8125
uuuuuguguuuuuaguagagauaggguuucacuguguuggccaggcuggucuugaaugccuguu	chr16:89481920-89482153(-)$1	233	67	131	102.2343
uuaaaauuuuuuuuguagagacagggucuugcuauguugcccagccuggucucgaacucuuggg	chr16:4725237-4725505(+)$1	268	41	105	98.9531
uuuguauuuguuuuguagagaugggauuuugccauguuaccugggcuggucucaaacuccugga	chr17:74043494-74043791(-)$1	297	76	140	94.3437
cuuuuuuuuuuuuuuuugggacaggguuuugcugugucacccaggcuggaguguggaaugugau	chr1:1814527-1814776(-)$1	249	42	106	69.3437
uuuuuauauuuuuuguagagauaggaucucacuauguugcccaggcuagucucaaauuccuggc	chr13:113505932-113506227(+)$1	295	71	135	108.4062
uuuuuguauuuuuaguagagacgggguuucuccaugaugaccaggcuggucuugaacuccugac	chr2:176023677-176023984(-)$1	307	88	152	106.0625
uuuuuguauuuuuaguaaagaugagguuucaacauguuggccaugcuggucuugaacuccuuac	chr22:42241047-42241340(+)$1	293	54	118	93.2500
uaaaaacaauuuuuuuagagauggggucucacuguguuguccagacuggucuugaacuccuggg	chr22:50812394-50812709(+)$1	315	85	149	82.7812
uauuuuuauuuuugcuagagaugggauuuugccauguugcccaggcuggucuagaacuucugag	chr20:18121600-18121860(+)$1	260	89	153	100.7500
cuuuuuuuuuuuuuuuugagacagagucuugcucuguugaccaggcuggagugcaguggcacga	chr11:101989118-101989355(+)$1	237	77	141	81.0625
uuucuuucuuuuuuuaagaaacaggguuuugccauguuccccaggcuggucuugaacuccuggg	chr1:109938306-109938554(-)$1	248	7	71	101.0625
uuuguauuuuuuuuguagaguugagguuucauaaugaugcccaggcugaucuugaacuccugag	chr10:21888595-21888889(+)$1	294	68	132	88.9531
cuuuucuuuuuuuuuuugagacagggucucacuuugucacccaggcuggagggcaguggugugg	chr11:43704247-43704499(+)$1	252	87	151	71.3750
uuuauuuauuuguuuuugagacauugucuugcugugucacccaggcuggaguucagugcaugau	chrX:122999520-122999774(+)$1	254	86	150	72.6250
aauuuuuauuuuuuguagauacagggucuugccauguuucccaggcuagucucaaauucuuggg	chr12:50918587-50918846(+)$1	259	88	152	96.2187
UCUCUCuuuuuuuuuuggagagagggucucacucugucacucaggcuggagugcagugguguga	chr2:70448463-70448672(-)$1	209	54	118	64.1093
uuuuguuuuguuuuguaaagaugggguuuugccguguugcccaggcugguuucgaauuuuuggg	chr1:8854620-8854894(-)$1	274	88	152	93.7968
uuuuuucuuuuuuuguagacacagggucuugcuguguugcccaugcuggucuugaauuccuggc	chr2:120732786-120733090(+)$1	304	72	136	102.7812
auuuuuguguuuuguuagagaugagguuuugccauauugcccaggcucgucuugaacaccgggg	chr1:28826073-28826324(+)$1	251	81	145	84.9687
uuuuuuuacuuuuuguggagacaggguuuugccauguugcccaggcuggucucaaacuccuagg	chr4:39717989-39718276(+)$1	287	46	110	109.4218
uucuuuuuuuuuucuuugagacggaaucuuacucugucacccaggcuggagagcaguggcauga	chr2:32401753-32402004(+)$1	251	89	153	65.2031
uuuguuuguuuguuuuugagauggaguauugcugugucacccaggcuggagugcaguguuggcg	chr12:31722957-31723232(-)$1	275	86	150	66.8437
uuucuggguuuuuuuuggagauagggucucccucugucacccaagcuggagugcaguggcacaa	chr14:24692452-24692709(-)$1	257	88	152	65.0468
uuuuuguauguuuuguagagacuguguuuugccacguugcccaggcuauucucaaacuccugag	chr15:50652911-50653166(+)$1	255	21	85	94.7343
ucuuuuauauuuuaguggagaugggguuucaccauguugcccaagcuugucucgaacuccugag	chr7:1193197-1193473(-)$1	276	42	106	94.1093
cuuuuguauuuuuagaagagacaggguuucuccauguuggucaggcuggucucgaacucccgac	chr17:78294326-78294598(+)$1	272	30	94	97.3906
cuuuuuuauuuuuaguagagaugagguuuuaccauguugaccaggcuggucuugaacuccugac	chr3:135888528-135888817(-)$1	289	68	132	106.3750
uuuauuauuuuuuuguggagacggggauucgccauguugcccaggcugguuucaaauuccuggg	chr16:71838530-71838851(-)$1	321	81	145	101.1406
uuuuuguauuuuuaguagagagggaguuucaccaugguggccaggguggucucuaacuccugac	chr17:53365596-53365917(+)$1	321	79	143	98.3281
uuuuuguguguuuuuuugagacagggucucccucuguugcccagcuuggagugcagugggguga	chr17:80586430-80586675(-)$1	245	86	150	68.6406
ccuggcuaauuuuuguagagacaggguuucaccauguugcccaggcuggucucaaacuccuggg	chr7:6168357-6168684(+)$1	327	252	316	99.7343
uuuuuuuuuuuuucauagagacaggaucucacuauguuacccaggcuggucucgaauuccuggg	chr22:42045271-42045531(+)$1	260	75	139	107.0000
guuuucuaauuuuuuuagaguugggaucucacuauguugcuuagacuggucuugaacuccuggc	chr15:25227870-25228126(+)$1	256	38	102	86.7656
UGUUGAuuuuuuuuuaagagacacguguuuacuauguuacccaggcuggacuccaacuccugga	chr7:99810311-99810596(-)$1	285	73	137	85.0468
uuuguuuuaauuuuguagagauggaguuuugcuguguuucccaaacuggucucaaacuccugga	chr3:185474447-185474700(-)$1	253	89	153	90.0468
uuuuuauauuuuuaguaaaggcaggguuucaccacguuggccggacuggucuuaaacuccugac	chr2:42419348-42419613(+)$1	265	198	262	90.8281
cuuuuguauuuuuuguagagacgggguuuugccauguuggccaggcucuacuuugagcccaggc	chr1:31529880-31530168(-)$1	288	67	131	87.0781
UGUAuuuauuuauuuuugagacagagucuugcucugaugcccaggcuggagugcaguggcguga	chr17:4190186-4190449(-)$1	263	87	151	71.5312
uucuuguauuuuuuguagaaaugggguuucaccauguugaccgggcuggucucgaacuccgggc	chr6:34288228-34288532(-)$1	304	71	135	99.7343
uuuuuguauuuuuaguagagacaggguuucacuauguuggccaaccuggucucaaacuccugac	chr13:98904092-98904346(+)$1	254	176	240	105.8281
aauuuuuauuuuuuguagauacagggucuugccauguuucccaggcuagucucaaauucuuggg	chr12:50918650-50918917(+)$1	267	25	89	96.2187
uuuuuguauuuuuaauagagacaggguuucacuauguuggccaggcuggucuugaacuccuggc	chr4:1888071-1888338(+)$1	267	29	93	112.6250
uuuguauuuuugauugauagagaugguuuugccacguugcccaggcuggucuuaaacuccuggg	chr17:76418711-76418962(+)$1	251	36	100	84.6562
uuuuuguguuuuuaguauagacggaguuuugccauguuggccaggcugguauugaacuuguggu	chr9:84293390-84293664(-)$1	274	84	148	94.2656
uuuuuguauuuuuaguagagauggggcuucaccauguuggccaggcuggucucgaacuccugag	chr2:38809672-38809944(-)$1	272	32	96	109.8125
uuuuuguauuuuuaguggagaugggguuuugccauguuggcuaggcuggucucaaaccccugac	chr5:138917681-138917982(+)$1	301	54	118	102.7812
uuuuuuuuuuuuugguagagagagggucucacuauguugccuaggcuggucuugaacuucuggg	chr3:126497684-126497950(+)$1	266	92	156	106.3750
uuuuugcauuuuuaguagagacaggguuucaucuuguuggccaggcugguuuugaacuccugac	chr7:139064419-139064717(+)$1	298	59	123	99.5781
uuucuuuuuuuuauuuugaggcagggccucacucugucacccaggcuggaguaaaguggcccag	chr11:70917910-70918152(-)$1	242	4	68	65.9062
GAuuuuuuuuuuuuuuugagauggagucucacuguaucacccaggcuggagugcaguggcauga	chr14:24566731-24567002(+)$1	271	66	130	68.1718
uuuuuguauuuuuaguagagauggaguuucaccauguuggccaggcuggucucgaacuccugac	chrX:123116200-123116488(+)$1	288	203	267	111.1406
uuuuuuuuuuuuuuguagagauagggucuugucauguugcccaggcugcucucaaacuccuggg	chr6:5365662-5365966(+)$1	304	89	153	110.2031
auauuuuuucucuacaagagauggaguuuugccauguugcccaggcuggucucaaacuccuggc	chr2:10949416-10949716(-)$1	300	64	128	91.3750
uuuauuuauuuauuuuagagauggggucucgcuuuguugcccaggcuagucucgaacuccuggg	chr18:708233-708603(-)$1	370	82	146	103.7968
uuuuuuuuuuuuuaauagagacgaaaucucacucuguuggccagguuggucuugaacuccuggc	chr4:74080334-74080599(-)$1	265	22	86	95.6718
uuuuucacuuuuuuauagagaugaggucuugcuuuguugcccagguugaucucgaauuccuggg	chr22:29301068-29301320(+)$1	252	23	87	92.5468
auuuuucuauuuuucuggagacgagauuuugcuauguugcccaagcuggucucaaauuccuggg	chr19:45587011-45587264(+)$1	253	12	76	91.0625
uuuucuuuuuuuuaguagagauaggacuucaccauguuggccggacuggucucaaacuccugac	chr17:27617282-27617605(-)$1	323	82	146	93.7187

#otherMatches

#Struct PSSM
^^^^^^^^^^^^^^bb]a]dddd]ccc22dddd4444dddd::eeeeemmmmeeeee:eeeeeq	chr19:10275604-10275866(-)$1	262	74	138	88.1718
++++++++++++++bb[eeeeellleeeeebb4444iiiiiiiii]dddd22bb]bb]dddd::	chr4:1895820-1896128(+)$1	308	30	94	94.9687
cc+++++++++++++++++hhhhhhhhlllhhhhhhhh4444ccc22ddddhhhhhhhhuuuuu	chr11:101989155-101989418(+)$1	263	40	104	81.0625
33dddd:::::::::::bb[ddddpppppppdddd]bbggggggg"""dddd''''''''dddd	chr5:133714051-133714321(+)$1	270	66	130	79.6562
+++++++++++dddd!!eeeeellleeeee22dddd22ccc22cccdddd22bb::::::ffff	chr13:33279949-33280205(+)$1	256	21	85	100.6718
^^^^^^^^^^^^^^^^ffffff:::BBLLLHHHHHHHHCCCLLLEEEEE:ggggggg[bb[bbm	chr9:33830069-33830361(+)$1	292	87	151	79.8125
ttttttttttteeeee:::::::dddd!!iiiiiiiii[a[ggggggg[ccceeeee[eeeee&	chr16:89481920-89482153(-)$1	233	67	131	102.2343
:eeeeemmmmeeeee::eeeee[dddd"""bboooooobb333dddd]eeeee:eeeeelllee	chr16:4725237-4725505(+)$1	268	41	105	98.9531
::JJJJJJJJJJJ{CCChhhhhhhh"""dddd!!bb"""bb[ccc[bbmmmmbb333ccc]bb3	chr17:74043494-74043791(-)$1	297	76	140	94.3437
:::::::::::::::::bbdddd[ccclllccc]dddd]bbggggggg[dddd$$$$$ffffff	chr1:1814527-1814776(-)$1	249	42	106	69.3437
:gggggggnnnnngggggggddddpppppppddddeeeee!!gggggggssssssssssggggg	chr13:113505932-113506227(+)$1	295	71	135	108.4062
GGGGG{IIIIIIIIIGGGGGGGddddllldddd::::::::ggggggg!!eeeeesssssssss	chr2:176023677-176023984(-)$1	307	88	152	106.0625
ggggggbbmmmmbb]ggggggg22eeeee333dddd]ddddeeeee:::::::::::BB{BB{F	chr22:42241047-42241340(+)$1	293	54	118	93.2500
hhhhhhnnnnnhhhhhhhh:::dddd!!eeeee$$$$$ffffff"""cccnnnnnccc]fffff	chr22:50812394-50812709(+)$1	315	85	149	82.7812
^^^^^^^^^^^dddd22ccc]ccc55555dddd]dddd]dddd]dddd]ccc]bb4444ddddE	chr20:18121600-18121860(+)$1	260	89	153	100.7500
:::::::::::::::::::hhhhhhhhlllhhhhhhhh::::dddd[ddddhhhhhhhhuuuuu	chr11:101989118-101989355(+)$1	237	77	141	81.0625
:::::eeeeennnnneeeeeccc[ccclllccc]ccc:::FFFFFF:bbrrrrrrrrrbb:ddd	chr1:109938306-109938554(-)$1	248	7	71	101.0625
EEEEE{IIIIIIIII::eeeee[ccc[dddd!!bb[a[bbmmmmbba]bb22dddd22ccc]ee	chr10:21888595-21888889(+)$1	294	68	132	88.9531
ffff22eeeee22eeeee:::::ccc!!ffffff[a!!ggggggg[a[ddddeeeeebbfffff	chr11:43704247-43704499(+)$1	252	87	151	71.3750
fff]ggggggg]hhhhhhhh55555hhhhhhhh]ccc22a]===========]eeeee::====	chrX:122999520-122999774(+)$1	254	86	150	72.6250
####eeeeennnnneeeee4444dddd:FFFFFFOOOOOOFFFFFFiiiiiiiiieeeee[ddd	chr12:50918587-50918846(+)$1	259	88	152	96.2187
:hhhhhhhhppppppphhhhhhhhFFFFFFFFFFFFLLLBB{DDDD{DDDDhhhhhhhh[bbpp	chr2:70448463-70448672(-)$1	209	54	118	64.1093
++eeeee####eeeeeeeeee[dddd&&&&&&&ccc!!ffffff"""ccc++++++++++++ii	chr1:8854620-8854894(-)$1	274	88	152	93.7968
^^^^^^^^^^^^^^^^^^^^^^^dddd22ggggggg]dddd22bb]iiiiiiiii333a]ccc:	chr2:120732786-120733090(+)$1	304	72	136	102.7812
::::::ffffff$$$$$hhhhhhhh[bb!!bboooooobb22bb]hhhhhhhhffffff::ddd	chr1:28826073-28826324(+)$1	251	81	145	84.9687
::::eeeeennnnneeeeedddd[ccclllccc]ddddA}FFFFFFDDDD:::::ffffff[==	chr4:39717989-39718276(+)$1	287	46	110	109.4218
:::::::::::::::::::ffffffpppppppffffff::FFFFFFCCC:::ffffffbb[bbm	chr2:32401753-32402004(+)$1	251	89	153	65.2031
ggg:::::::::::::::::::dddd[ggggggg[a!!ddddccc[eeeeeggggggg!!cccp	chr12:31722957-31723232(-)$1	275	86	150	66.8437
::::eeeee&&&&&&&fffffflllffffff7777777eeeeeFFFFFF{CCC{IIIIIIIII:	chr14:24692452-24692709(-)$1	257	88	152	65.0468
PPPPEEEEELLLGGGGGGGBB{GGGGGGG{BBccc"""bb[ddddvvvvvvvvvvvvvdddd]b	chr15:50652911-50653166(+)$1	255	21	85	94.7343
::::::::::::::::CCC{HHHHHHHHKKCCCKKBB{BB{BB{GGGGGGG:::::::ddddmm	chr7:1193197-1193473(-)$1	276	42	106	94.1093
ffffffooooooffffff]ccc]dddd::CCCKKEEEEE{GGGGGGG{DDDD{GGGGGGG::::	chr17:78294326-78294598(+)$1	272	30	94	97.3906
eeeggggggglllggggggg:ggggggg))))))))))eeeeellleeeee0000000000ggg	chr3:135888528-135888817(-)$1	289	68	132	106.3750
::::::::::::::::DDDD}EEEEE::::dddd[cccnnnnncccdddd:::==========[	chr16:71838530-71838851(-)$1	321	81	145	101.1406
ttttttttttteeeee:CCC}EEEEEYYDDDDYYCCC}A}FFFFFF:::::::::::ffffff[	chr17:53365596-53365917(+)$1	321	79	143	98.3281
fffwwwwwwwwwwwwwwffffff]ccc:::::::CCCYYFFFFFFBBDDDD}DDDD}BBCCCEE	chr17:80586430-80586675(-)$1	245	86	150	68.6406
fffff[dddd####bb[eeeeellleeeeebb333dddd]ffffffeeeee]a22bb22cccbb	chr7:6168357-6168684(+)$1	327	252	316	99.7343
eeee[eeeeeooooooeeeee]eeeee22bb4444dddd]ffffffdddd22bb666666ffff	chr22:42045271-42045531(+)$1	260	75	139	107.0000
JJJJJJJJJJOOOOOOHHHHHHHHdddd"""cccpppppppccc333dddd:::::::ffffff	chr15:25227870-25228126(+)$1	256	38	102	86.7656
:ccc!!cccooooooccc]ccceeeeennnnneeeee:::eeeee[ccclllccc333eeeee:	chr7:99810311-99810596(-)$1	285	73	137	85.0468
ggggtttttttttttgggggggggggggg[dddd[ddddllldddddddd333gggggggccc[	chr3:185474447-185474700(-)$1	253	89	153	90.0468
::::::::::::::::::cccdddddddd[dddd[cccnnnnncccdddd333dddd]dddd]c	chr2:42419348-42419613(+)$1	265	198	262	90.8281
===>>>>>>>>>>>>>>eeeeedddd22ddddbbccc[dddd[eeeeeooooooeeeee22ddd	chr1:31529880-31530168(-)$1	288	67	131	87.0781
>>>>>>>>ccc]eeeee]ccc22iiiiiiiii]ccc]eeeee]ggggggg:hhhhhhhh[cccm	chr17:4190186-4190449(-)$1	263	87	151	71.5312
77eeeeehhhhhhhh[bb"""hhhhhhhh[dddd[cccnnnnncccdddd333hhhhhhhh22b	chr6:34288228-34288532(-)$1	304	71	135	99.7343
hh"""bb%%%%%%ccc[eeeee[eeeee"""aooooooa333eeeee]eeeee22ccc4444bb	chr13:98904092-98904346(+)$1	254	176	240	105.8281
::::eeeeennnnneeeee::::ccc[bb[ccc[bbnnnnnbbccc]bb]ccc:::::bb[ddd	chr12:50918650-50918917(+)$1	267	25	89	96.2187
gggggggpppppppggggggg::dddd[eeeee[bb!!ggggggg!!cccnnnnncccgggggg	chr4:1888071-1888338(+)$1	267	29	93	112.6250
::a[ddddpppppppdddd]affffffeeeee%%%%%%ggggggg!!cccnnnnncccgggggg	chr17:76418711-76418962(+)$1	251	36	100	84.6562
vvvvvdddd:::::CCC~~~~DDDD~~~~CCC~~~~DDDDYYGGGGGGG::::::eeeeeoooo	chr9:84293390-84293664(-)$1	274	84	148	94.2656
ttttttttttteeeee:eeeee[bb[bb"""ccclllccc22bb]bb]eeeeedddd[ddddmm	chr2:38809672-38809944(-)$1	272	32	96	109.8125
:::::iiiiiiiiibb[eeeee"""ccc[===========[bbbb[ccc[ccc!!ggggggg[a	chr5:138917681-138917982(+)$1	301	54	118	102.7812
zzzzzzzzzzffffff]ccc:::dddd!!bblllbb22dddd:dddd[ddddccc[ccc[dddd	chr3:126497684-126497950(+)$1	266	92	156	106.3750
CC{EEEEE{FFFFFF::::hhhhhhhhlllhhhhhhhhdddddddd[ccc"""bb[a!!cccmm	chr7:139064419-139064717(+)$1	298	59	123	99.5781
::::::::::::::EEEEEccc[eeeee[aeeeeecccnnnnnccc]eeeee333a]eeeee]c	chr11:70917910-70918152(-)$1	242	4	68	65.9062
tt=========================]bb]bb]ccc22===================bb[bbm	chr14:24566731-24567002(+)$1	271	66	130	68.1718
="""bb"""eeeeepppppppeeeee333bb4444===========ddddCCCCCCYYBB}CCC	chrX:123116200-123116488(+)$1	288	203	267	111.1406
vvvvvdddd]ccc]eeeee::::EEEEEKKBBCCC:::ggggggg!!aqqqqqqqqa]gggggg	chr6:5365662-5365966(+)$1	304	89	153	110.2031
::::::::eeeeellleeeee:ggggggg[dddd[cccnnnnncccdddd333gggggggFFFF	chr2:10949416-10949716(-)$1	300	64	128	91.3750
""bboooooobb4444ccc]ddddbb%%%%%%dddd!!ggggggg!!cccnnnnncccgggggg	chr18:708233-708603(-)$1	370	82	146	103.7968
:::::::::::::ggggggg!!bbmmmmbb]ggggggghhhhhhhheeeee[a!!bb[dddd&&	chr4:74080334-74080599(-)$1	265	22	86	95.6718
:::::::ddddnnnnndddd::dddd!!ffffff####gggggggcccmmmmccc333gggggg	chr22:29301068-29301320(+)$1	252	23	87	92.5468
brrrrrrrrrbb22ccceeeee[bb$$$$$bboooooobb55555bb]eeeee::FFFFFF{A{	chr19:45587011-45587264(+)$1	253	12	76	91.0625
::::::::::::::FFFFFF:::bboooooobbCCC{FFFFFF::::ddddssssssssssddd	chr17:27617282-27617605(-)$1	323	82	146	93.7187

#DB
..............)).).)))).)))..))))....))))..(((((....))))).(((((.	chr19:10275604-10275866(-)$1	1	74	138	88.1718
..............((.(((((...)))))))....))))))))).))))..)).)).))))..	chr4:1895820-1896128(+)$1	1	30	94	94.9687
((.................((((((((...))))))))....)))..))))((((((((.....	chr11:101989155-101989418(+)$1	1	40	104	81.0625
..))))...........((.((((.......)))).))(((((((...((((........((((	chr5:133714051-133714321(+)$1	1	66	130	79.6562
...........((((..(((((...)))))..))))..)))..)))))))..))......((((	chr13:33279949-33280205(+)$1	1	21	85	100.6718
................))))))...((...(((((((((((...(((((.(((((((.((.((.	chr9:33830069-33830361(+)$1	1	87	151	79.8125
...........))))).......((((..(((((((((.(.(((((((.((((((((.(((((.	chr16:89481920-89482153(-)$1	1	67	131	102.2343
.(((((....)))))..(((((.((((...((......))...)))).))))).(((((...))	chr16:4725237-4725505(+)$1	1	41	105	98.9531
..(((((((((((.(((((((((((...((((..((...((.(((.((....))...))).)).	chr17:74043494-74043791(-)$1	1	76	140	94.3437
.................((((((.(((...))).)))).))(((((((.((((.....((((((	chr1:1814527-1814776(-)$1	1	42	106	69.3437
.(((((((.....)))))))((((.......))))(((((..(((((((..........)))))	chr13:113505932-113506227(+)$1	1	71	135	108.4062
(((((.((((((((((((((((((((...))))........(((((((..(((((.........	chr2:176023677-176023984(-)$1	1	88	152	106.0625
((((((((....)).)))))))..)))))...)))).)))))))))...........((.((.(	chr22:42241047-42241340(+)$1	1	54	118	93.2500
((((((.....))))))))...((((..(((((.....((((((...(((.....))).)))))	chr22:50812394-50812709(+)$1	1	85	149	82.7812
...........))))..))).))).....)))).)))).)))).)))).))).))....))))(	chr20:18121600-18121860(+)$1	1	89	153	100.7500
...................((((((((...))))))))....((((.((((((((((((.....	chr11:101989118-101989355(+)$1	1	77	141	81.0625
.....(((((.....)))))(((.(((...))).)))...((((((.((.........)).(((	chr1:109938306-109938554(-)$1	1	7	71	101.0625
(((((.(((((((((..(((((.(((.((((..((.(.((....))).))..))))..))).))	chr10:21888595-21888889(+)$1	1	68	132	88.9531
))))..)))))..))))).....(((..((((((.(..(((((((.(.((((((((((((((((	chr11:43704247-43704499(+)$1	1	87	151	71.3750
))).))))))).)))))))).....)))))))).)))..).))))))))))).)))))..((((	chrX:122999520-122999774(+)$1	1	86	150	72.6250
....(((((.....)))))....)))).((((((......((((((((((((((((((((.(((	chr12:50918587-50918846(+)$1	1	88	152	96.2187
.((((((((.......))))))))((((((((((((...((.((((.((((((((((((.((..	chr2:70448463-70448672(-)$1	1	54	118	64.1093
..(((((....((((((((((.((((.......(((..((((((...(((............((	chr1:8854620-8854894(-)$1	1	88	152	93.7968
.......................))))..))))))).))))..)).)))))))))...).))).	chr2:120732786-120733090(+)$1	1	72	136	102.7812
......((((((.....((((((((.((..((......))..)).))))))))))))))..(((	chr1:28826073-28826324(+)$1	1	81	145	84.9687
....(((((.....)))))((((.(((...))).))))).)))))))))).....((((((.((	chr4:39717989-39718276(+)$1	1	46	110	109.4218
...................((((((.......))))))..(((((((((...((((((((.((.	chr2:32401753-32402004(+)$1	1	89	153	65.2031
)))...................((((.(((((((.(..(((((((.((((((((((((..(((.	chr12:31722957-31723232(-)$1	1	86	150	66.8437
....(((((.......((((((...)))))).......)))))((((((.(((.(((((((((.	chr14:24692452-24692709(-)$1	1	88	152	65.0468
....(((((...(((((((((.(((((((.(((((...((.((((.............)))).)	chr15:50652911-50653166(+)$1	1	21	85	94.7343
................(((.((((((((..(((..((.((.((.(((((((.......((((..	chr7:1193197-1193473(-)$1	1	42	106	94.1093
((((((......)))))).))).))))..(((..(((((.(((((((.((((.(((((((....	chr17:78294326-78294598(+)$1	1	30	94	97.3906
)))(((((((...))))))).(((((((..........(((((...)))))..........)))	chr3:135888528-135888817(-)$1	1	68	132	106.3750
................)))).)))))....((((.(((.....)))))))...((((((((((.	chr16:71838530-71838851(-)$1	1	81	145	101.1406
...........))))).))).)))))..))))..))).).))))))...........((((((.	chr17:53365596-53365917(+)$1	1	79	143	98.3281
(((..............)))))).))).......)))..)))))))))))).)))).)))))))	chr17:80586430-80586675(-)$1	1	86	150	68.6406
(((((.((((....((.(((((...)))))))...)))).))))))))))).)..))..)))))	chr7:6168357-6168684(+)$1	1	252	316	99.7343
((((.(((((......))))).)))))..))....)))).))))))))))..))......))))	chr22:42045271-42045531(+)$1	1	75	139	107.0000
((((((((((......((((((((((((...(((.......)))...)))).......((((((	chr15:25227870-25228126(+)$1	1	38	102	86.7656
.(((..(((......))).)))(((((.....)))))...(((((.(((...)))...))))).	chr7:99810311-99810596(-)$1	1	73	137	85.0468
((((...........)))))))(((((((.((((.((((...))))))))...)))))))(((.	chr3:185474447-185474700(-)$1	1	89	153	90.0468
..................(((((((((((.((((.(((.....)))))))...)))).)))).)	chr2:42419348-42419613(+)$1	1	198	262	90.8281
)))..............)))))))))..))))(((((.((((.(((((......)))))..)))	chr1:31529880-31530168(-)$1	1	67	131	87.0781
........))).))))).)))..))))))))).))).))))).))))))).((((((((.(((.	chr17:4190186-4190449(-)$1	1	87	151	71.5312
..)))))((((((((.((...((((((((.((((.(((.....)))))))...))))))))..)	chr6:34288228-34288532(-)$1	1	71	135	99.7343
((...((......(((.(((((.(((((...(......)...))))).)))))..)))....))	chr13:98904092-98904346(+)$1	1	176	240	105.8281
....(((((.....)))))....(((.((.(((.((.....))))).)).))).....((.(((	chr12:50918650-50918917(+)$1	1	25	89	96.2187
(((((((.......)))))))..((((.(((((.((..(((((((..(((.....)))))))))	chr4:1888071-1888338(+)$1	1	29	93	112.6250
..(.((((.......)))).)(((((((((((......(((((((..(((.....)))))))))	chr17:76418711-76418962(+)$1	1	36	100	84.6562
.....)))).....)))....))))....)))....))))..)))))))......(((((....	chr9:84293390-84293664(-)$1	1	84	148	94.2656
...........))))).(((((.((.((...(((...)))..)).)).)))))((((.((((..	chr2:38809672-38809944(-)$1	1	32	96	109.8125
.....(((((((((((.(((((...(((.(((((((((((.((((.(((.(((..(((((((.(	chr5:138917681-138917982(+)$1	1	54	118	102.7812
..........)))))).)))...((((..((...))..)))).((((.(((((((.(((.((((	chr3:126497684-126497950(+)$1	1	92	156	106.3750
((.(((((.((((((....((((((((...))))))))((((((((.(((...((.(..(((..	chr7:139064419-139064717(+)$1	1	59	123	99.5781
..............((((((((.(((((.(((((((((.....))).)))))...).))))).)	chr11:70917910-70918152(-)$1	1	4	68	65.9062
..))))))))))))))))))))))))).)).)).)))..)))))))))))))))))))((.((.	chr14:24566731-24567002(+)$1	1	66	130	68.1718
(...((...(((((.......)))))...))....)))))))))))))))))))))..)).)))	chrX:123116200-123116488(+)$1	1	203	267	111.1406
.....)))).))).)))))....(((((..(((((...(((((((..(........).))))))	chr6:5365662-5365966(+)$1	1	89	153	110.2031
........(((((...))))).(((((((.((((.(((.....)))))))...)))))))))))	chr2:10949416-10949716(-)$1	1	64	128	91.3750
..((......))....))).))))((......((((..(((((((..(((.....)))))))))	chr18:708233-708603(-)$1	1	82	146	103.7968
.............(((((((..((....)).)))))))(((((((((((((.(..((.((((..	chr4:74080334-74080599(-)$1	1	22	86	95.6718
.......((((.....))))..((((..((((((....((((((((((....)))...))))))	chr22:29301068-29301320(+)$1	1	23	87	92.5468
(.........))..)))(((((.((.....((......)).....)).)))))..((((((.(.	chr19:45587011-45587264(+)$1	1	12	76	91.0625
..............))))))...((......))(((.((((((....((((..........)))	chr17:27617282-27617605(-)$1	1	82	146	93.7187

#PSSM
u : 0.70	c : 0.12	a : 0.09	U : 0.04	g : 0.01	G : 0.01	
u : 0.84	a : 0.06	c : 0.03	G : 0.03	C : 0.01	A : 0.01	
u : 0.87	a : 0.04	U : 0.04	c : 0.03	
u : 0.73	g : 0.09	a : 0.07	c : 0.04	C : 0.01	U : 0.01	A : 0.01	
u : 0.87	a : 0.04	g : 0.03	U : 0.01	G : 0.01	c : 0.01	
u : 0.48	g : 0.28	a : 0.14	c : 0.06	C : 0.01	A : 0.01	
u : 0.81	a : 0.09	c : 0.06	g : 0.03	
a : 0.46	u : 0.42	g : 0.07	c : 0.03	
u : 0.87	a : 0.09	g : 0.01	c : 0.01	
u : 0.90	g : 0.06	a : 0.01	c : 0.01	
u : 1.00	
u : 0.90	g : 0.04	a : 0.03	c : 0.01	
u : 0.95	a : 0.04	
u : 0.62	a : 0.29	g : 0.04	c : 0.03	
g : 0.56	u : 0.32	a : 0.06	c : 0.04	
u : 0.92	a : 0.06	g : 0.01	
a : 0.70	u : 0.18	g : 0.10	
g : 0.92	a : 0.04	u : 0.03	
a : 0.98	g : 0.01	
g : 0.92	a : 0.03	u : 0.03	c : 0.01	
a : 0.93	u : 0.03	g : 0.03	
c : 0.51	u : 0.42	g : 0.06	
a : 0.51	g : 0.46	u : 0.01	
g : 0.84	a : 0.10	u : 0.03	c : 0.01	
g : 0.75	a : 0.20	u : 0.03	c : 0.01	
g : 0.84	a : 0.14	u : 0.01	
u : 0.92	c : 0.04	a : 0.01	g : 0.01	
u : 0.56	c : 0.42	a : 0.01	
u : 1.00	
u : 0.50	c : 0.50	
g : 0.48	a : 0.45	u : 0.03	c : 0.03	
c : 0.92	u : 0.06	a : 0.01	
c : 0.50	u : 0.48	a : 0.01	
a : 0.64	c : 0.15	g : 0.14	u : 0.06	
u : 0.95	c : 0.04	
g : 0.96	a : 0.03	
u : 0.93	a : 0.04	g : 0.01	
u : 0.84	c : 0.15	
g : 0.73	a : 0.20	u : 0.04	c : 0.01	
c : 0.64	g : 0.26	a : 0.07	u : 0.01	
c : 0.93	u : 0.06	
c : 0.93	u : 0.06	
a : 0.93	g : 0.06	
g : 0.87	a : 0.07	u : 0.04	
g : 0.87	a : 0.07	c : 0.04	
c : 0.93	u : 0.04	g : 0.01	
u : 1.00	
g : 0.87	a : 0.07	c : 0.03	u : 0.01	
g : 0.92	a : 0.03	u : 0.03	c : 0.01	
u : 0.73	a : 0.25	g : 0.01	
c : 0.70	g : 0.23	u : 0.04	a : 0.01	
u : 0.95	c : 0.01	g : 0.01	a : 0.01	
c : 0.46	u : 0.31	g : 0.18	a : 0.03	
g : 0.42	a : 0.31	c : 0.20	u : 0.06	
a : 0.92	g : 0.06	u : 0.01	
a : 0.76	g : 0.21	u : 0.01	
c : 0.59	u : 0.35	a : 0.03	g : 0.01	
u : 0.70	g : 0.20	a : 0.06	c : 0.03	
c : 0.71	g : 0.17	u : 0.09	a : 0.01	
c : 0.79	u : 0.12	g : 0.04	a : 0.03	
u : 0.71	g : 0.12	a : 0.09	c : 0.06	
g : 0.76	u : 0.14	c : 0.07	a : 0.01	
g : 0.60	a : 0.32	c : 0.03	u : 0.03	
g : 0.40	c : 0.34	a : 0.18	u : 0.06	

#score	5858.15625
#seq	64
#width	64
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800XSC_GNL3_transcript_m1_run1.nuc.txt

#NT
AUU	chr15:74222553-74222761(+)$1	208	72	75	8.9999
AUU	chr4:83816904-83817169(-)$1	265	10	13	8.9999
auu	chrM:4347-4557(+)$1	210	22	25	8.9999
auu	chr15:72150877-72151102(+)$1	225	11	14	8.9999
AUU	chrM:4324-4547(+)$1	223	1	4	8.9999
AUU	chr12:48416393-48416608(+)$1	215	96	99	8.9999
auu	chr3:193373466-193373676(+)$1	210	65	68	8.9999
AUU	chr1:173835344-173835554(-)$1	210	8	11	8.9999
AUU	chr14:32954185-32954427(+)$1	242	9	12	8.9999
auu	chr3:193373476-193373688(+)$1	212	55	58	8.9999
AUU	chr7:103029312-103029525(-)$1	213	5	8	8.9999
auu	chr6:31958179-31958384(+)$1	205	71	74	8.9999
AUU	chr7:103029306-103029512(-)$1	206	23	26	8.9999
AUU	chr12:48416389-48416593(+)$1	204	100	103	8.9999
AUU	chr6:27860378-27860619(-)$1	241	145	148	8.9999
AUU	chr9:139565014-139565228(+)$1	214	17	20	8.9999
AUU	chr9:139565003-139565214(+)$1	211	28	31	8.9999
auu	chr14:102706557-102706760(-)$1	203	162	165	8.9999
AUU	chr1:173835354-173835573(-)$1	219	14	17	8.9999
AUU	chr13:92003225-92003447(+)$1	222	2	5	8.9999
AUU	chrM:12176-12400(+)$1	224	24	27	8.9999
AUU	chrM:516-721(+)$1	205	157	160	8.9999
AUU	chr6:27792114-27792355(+)$1	241	196	199	8.9999
auu	chr11:106689567-106689780(-)$1	213	156	159	8.9999
AUU	chrM:4193-4430(+)$1	237	10	13	8.9999
auu	chr11:106689580-106689788(-)$1	208	164	167	8.9999
AUU	chr13:92003090-92003315(+)$1	225	10	13	8.9999
AUU	chr15:74222561-74222772(+)$1	211	64	67	8.9999
AUU	chrM:9852-10078(+)$1	226	26	29	8.9999
AUU	chr19:893479-893691(+)$1	212	0	3	8.9999
AUU	chr12:69236346-69236554(-)$1	208	49	52	8.9999
AUU	chr10:128256276-128256488(-)$1	212	0	3	8.9999

#otherMatches

#Struct PSSM
cqq	chrM:488-713(+)$1	225	185	188	8.9999
hhh	chr15:74222553-74222761(+)$1	208	72	75	8.9999
:::	chr4:83816904-83817169(-)$1	265	10	13	8.9999
fff	chrM:4347-4557(+)$1	210	22	25	8.9999
^^^	chr15:72150877-72151102(+)$1	225	11	14	8.9999
:::	chrM:4324-4547(+)$1	223	1	4	8.9999
ff2	chr12:48416393-48416608(+)$1	215	96	99	8.9999
!!e	chr3:193373466-193373676(+)$1	210	65	68	8.9999
:::	chr1:173835344-173835554(-)$1	210	8	11	8.9999
fff	chr14:32954185-32954427(+)$1	242	9	12	8.9999
!!e	chr3:193373476-193373688(+)$1	212	55	58	8.9999
GGL	chr7:103029312-103029525(-)$1	213	5	8	8.9999
emm	chr6:31958179-31958384(+)$1	205	71	74	8.9999
g::	chr7:103029306-103029512(-)$1	206	23	26	8.9999
)))	chr12:48416389-48416593(+)$1	204	100	103	8.9999
::c	chr6:27860378-27860619(-)$1	241	145	148	8.9999
KCC	chr9:139565014-139565228(+)$1	214	17	20	8.9999
rrr	chr9:139565003-139565214(+)$1	211	28	31	8.9999
]ff	chr14:102706557-102706760(-)$1	203	162	165	8.9999
ppp	chr1:173835354-173835573(-)$1	219	14	17	8.9999
dd[	chr13:92003225-92003447(+)$1	222	2	5	8.9999
:::	chrM:12176-12400(+)$1	224	24	27	8.9999
cqq	chrM:516-721(+)$1	205	157	160	8.9999
???	chr6:27792114-27792355(+)$1	241	196	199	8.9999
[gg	chr11:106689567-106689780(-)$1	213	156	159	8.9999
{CC	chrM:4193-4430(+)$1	237	10	13	8.9999
[gg	chr11:106689580-106689788(-)$1	208	164	167	8.9999
f++	chr13:92003090-92003315(+)$1	225	10	13	8.9999
hhh	chr15:74222561-74222772(+)$1	211	64	67	8.9999
^^^	chrM:9852-10078(+)$1	226	26	29	8.9999
:::	chr19:893479-893691(+)$1	212	0	3	8.9999
eee	chr12:69236346-69236554(-)$1	208	49	52	8.9999
:::	chr10:128256276-128256488(-)$1	212	0	3	8.9999

#DB
(..	chrM:488-713(+)$1	1	185	188	8.9999
)))	chr15:74222553-74222761(+)$1	1	72	75	8.9999
...	chr4:83816904-83817169(-)$1	1	10	13	8.9999
)))	chrM:4347-4557(+)$1	1	22	25	8.9999
...	chr15:72150877-72151102(+)$1	1	11	14	8.9999
...	chrM:4324-4547(+)$1	1	1	4	8.9999
)).	chr12:48416393-48416608(+)$1	1	96	99	8.9999
..(	chr3:193373466-193373676(+)$1	1	65	68	8.9999
...	chr1:173835344-173835554(-)$1	1	8	11	8.9999
(((	chr14:32954185-32954427(+)$1	1	9	12	8.9999
..(	chr3:193373476-193373688(+)$1	1	55	58	8.9999
((.	chr7:103029312-103029525(-)$1	1	5	8	8.9999
(..	chr6:31958179-31958384(+)$1	1	71	74	8.9999
)..	chr7:103029306-103029512(-)$1	1	23	26	8.9999
...	chr12:48416389-48416593(+)$1	1	100	103	8.9999
..(	chr6:27860378-27860619(-)$1	1	145	148	8.9999
.((	chr9:139565014-139565228(+)$1	1	17	20	8.9999
...	chr9:139565003-139565214(+)$1	1	28	31	8.9999
.))	chr14:102706557-102706760(-)$1	1	162	165	8.9999
...	chr1:173835354-173835573(-)$1	1	14	17	8.9999
((.	chr13:92003225-92003447(+)$1	1	2	5	8.9999
...	chrM:12176-12400(+)$1	1	24	27	8.9999
(..	chrM:516-721(+)$1	1	157	160	8.9999
...	chr6:27792114-27792355(+)$1	1	196	199	8.9999
.((	chr11:106689567-106689780(-)$1	1	156	159	8.9999
.((	chrM:4193-4430(+)$1	1	10	13	8.9999
.((	chr11:106689580-106689788(-)$1	1	164	167	8.9999
(..	chr13:92003090-92003315(+)$1	1	10	13	8.9999
)))	chr15:74222561-74222772(+)$1	1	64	67	8.9999
...	chrM:9852-10078(+)$1	1	26	29	8.9999
...	chr19:893479-893691(+)$1	1	0	3	8.9999
(((	chr12:69236346-69236554(-)$1	1	49	52	8.9999
...	chr10:128256276-128256488(-)$1	1	0	3	8.9999

#PSSM
A : 0.75	a : 0.24	
U : 0.75	u : 0.24	
U : 0.75	u : 0.24	

#score	296.99999999999994
#seq	33
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_CDS_m3_run1.nuc.txt

#NT
GCCC	chr4:1317277-1317526(+)$1	249	133	137	11.9999
GCCC	chr1:228329268-228329579(+)$1	311	150	154	11.9999
GCCC	chr1:36788084-36788341(+)$1	257	18	22	11.9999
GCCC	chr19:41312888-41313167(+)$1	279	31	35	11.9999
GCCC	chr19:1468350-1468635(-)$1	285	70	74	11.9999
GCCC	chr19:36517709-36517988(+)$1	279	136	140	11.9999
GCCC	chr11:63883596-63883850(-)$1	254	133	137	11.9999
GCCC	chr22:50016818-50017058(-)$1	240	21	25	11.9999
GCCC	chr22:45130936-45131204(+)$1	268	80	84	11.9999
GCCC	chr16:2580595-2580934(+)$1	339	54	58	11.9999
GCCC	chr7:5569289-5569537(-)$1	248	22	26	11.9999
GCCC	chr19:2270568-2270794(+)$1	226	63	67	11.9999
GCCC	chr8:144566868-144567119(-)$1	251	201	205	11.9999
GCCC	chr19:1416336-1416617(+)$1	281	205	209	11.9999
GCCC	chr11:2005485-2005800(+)$1	315	75	79	11.9999
GCCC	chr11:2400250-2400496(+)$1	246	14	18	11.9999
GCCC	chr11:557748-558010(+)$1	262	2	6	11.9999
GCCC	chr22:50018399-50018709(-)$1	310	32	36	11.9999
GCCC	chr17:76116726-76116953(-)$1	227	8	12	11.9999
gccc	chr15:23086204-23086501(-)$1	297	8	12	11.9999
GCCC	chr21:46954288-46954555(-)$1	267	40	44	11.9999
GCCC	chr19:3543069-3543335(-)$1	266	131	135	11.9999
GCCC	chr19:1433639-1433874(+)$1	235	14	18	11.9999
GCCC	chr2:172379715-172379968(+)$1	253	78	82	11.9999
GCCC	chr5:154135352-154135593(+)$1	241	60	64	11.9999
GCCC	chr22:20110054-20110315(+)$1	261	71	75	11.9999
GCCC	chr17:76117142-76117453(-)$1	311	135	139	11.9999
GCCC	chr11:637278-637537(+)$1	259	9	13	11.9999
GCCC	chr19:14273421-14273669(+)$1	248	14	18	11.9999
GCCC	chrX:152957466-152957750(+)$1	284	6	10	11.9999
GCCC	chr20:31172308-31172546(-)$1	238	53	57	11.9999
GCCC	chr17:79385262-79385502(+)$1	240	4	8	11.9999
GCCC	chr16:31724701-31724982(+)$1	281	145	149	11.9999
GCCC	chr11:126146291-126146529(+)$1	238	17	21	11.9999
GCCC	chrX:152938524-152938824(-)$1	300	233	237	11.9999
GCCC	chr16:448097-448371(+)$1	274	200	204	11.9999
GCCC	chr1:1190482-1190692(-)$1	210	23	27	11.9999
GCCC	chr14:104165104-104165389(+)$1	285	205	209	11.9999
GCCC	chr19:36523007-36523336(+)$1	329	25	29	11.9999
GCCC	chr19:55856218-55856478(+)$1	260	168	172	11.9999
GCCC	chr22:50020347-50020610(-)$1	263	145	149	11.9999
GCCC	chr22:37622737-37623078(-)$1	341	178	182	11.9999
GCCC	chr1:1691151-1691409(-)$1	258	39	43	11.9999
gccc	chrX:152939467-152939804(-)$1	337	105	109	11.9999
GCCC	chr19:18547792-18548093(-)$1	301	74	78	11.9999
GCCC	chr7:77166711-77166985(+)$1	274	236	240	11.9999
GCCC	chr16:4431716-4431974(-)$1	258	241	245	11.9999
GCCC	chr16:85392784-85393080(+)$1	296	58	62	11.9999
GCCC	chr17:80789394-80789647(+)$1	253	68	72	11.9999
GCCC	chr21:45562978-45563236(+)$1	258	229	233	11.9999
GCCC	chr11:3069073-3069311(-)$1	238	37	41	11.9999
GCCC	chr19:18548472-18548747(-)$1	275	7	11	11.9999
GCCC	chr16:89643723-89644054(+)$1	331	57	61	11.9999
GCCC	chr7:127670360-127670609(+)$1	249	12	16	11.9999
GCCC	chr11:639270-639549(+)$1	279	24	28	11.9999
GCCC	chr11:1309661-1309955(-)$1	294	167	171	11.9999
GCCC	chr20:32251201-32251446(-)$1	245	16	20	11.9999
GCCC	chr7:1887149-1887398(-)$1	249	24	28	11.9999
GCCC	chr16:1835523-1835781(+)$1	258	67	71	11.9999
GCCC	chr16:4664672-4664952(-)$1	280	256	260	11.9999
GCCC	chr1:155658041-155658333(-)$1	292	35	39	11.9999
GCCC	chr19:577689-577966(+)$1	277	30	34	11.9999
GCCC	chr3:49049845-49050125(+)$1	280	37	41	11.9999
GCCC	chr22:50646902-50647154(+)$1	252	115	119	11.9999
GCCC	chr17:80788496-80788787(+)$1	291	157	161	11.9999
gccc	chr9:101867329-101867617(+)$1	288	2	6	11.9999
GCCC	chr15:80214936-80215252(-)$1	316	0	4	11.9999
GCCC	chr12:133295286-133295547(+)$1	261	237	241	11.9999
GCCC	chr17:80054218-80054516(-)$1	298	21	25	11.9999
GCCC	chr7:923820-924052(+)$1	232	30	34	11.9999
GCCC	chr17:46627702-46628017(+)$1	315	123	127	11.9999
GCCC	chr22:50018199-50018437(-)$1	238	128	132	11.9999
GCCC	chr19:1468752-1469027(-)$1	275	31	35	11.9999
gccc	chr19:1475380-1475619(-)$1	239	71	75	11.9999
GCCC	chr11:126146194-126146433(+)$1	239	114	118	11.9999
GCCC	chr11:63884393-63884647(-)$1	254	248	252	11.9999
GCCC	chr4:891781-892047(-)$1	266	10	14	11.9999
GCcc	chr17:36861787-36862080(+)$1	293	14	18	11.9999
GCCC	chr16:4431602-4431878(-)$1	276	145	149	11.9999
gccc	chr22:50017035-50017299(-)$1	264	173	177	11.9999
GCCC	chr2:242839124-242839440(+)$1	316	148	152	11.9999
GCCC	chr19:18548350-18548616(-)$1	266	82	86	11.9999
GCCC	chr16:725957-726270(+)$1	313	128	132	11.9999
GCCC	chr11:1983449-1983695(+)$1	246	113	117	11.9999
GCCC	chr19:1467744-1467982(-)$1	238	50	54	11.9999
gccc	chr11:2407199-2407452(+)$1	253	53	57	11.9999
GCCC	chr9:139756783-139757022(-)$1	239	106	110	11.9999
GCCC	chr11:558491-558758(+)$1	267	135	139	11.9999
gccc	chr19:10222217-10222508(+)$1	291	102	106	11.9999
GCCC	chr7:127670525-127670759(+)$1	234	41	45	11.9999
GCCC	chr5:154135495-154135744(+)$1	249	45	49	11.9999
GCCC	chr19:863004-863284(+)$1	280	57	61	11.9999
GCCC	chr20:32255370-32255636(-)$1	266	54	58	11.9999

#otherMatches

#Struct PSSM
bb]b	chr12:132402968-132403223(+)$1	255	48	52	11.9999
!ccc	chr4:1317277-1317526(+)$1	249	133	137	11.9999
EEEE	chr1:228329268-228329579(+)$1	311	150	154	11.9999
[fff	chr1:36788084-36788341(+)$1	257	18	22	11.9999
BBBB	chr19:41312888-41313167(+)$1	279	31	35	11.9999
ffff	chr19:1468350-1468635(-)$1	285	70	74	11.9999
gggg	chr19:36517709-36517988(+)$1	279	136	140	11.9999
eeee	chr11:63883596-63883850(-)$1	254	133	137	11.9999
EEEE	chr22:50016818-50017058(-)$1	240	21	25	11.9999
FFFC	chr22:45130936-45131204(+)$1	268	80	84	11.9999
ffff	chr16:2580595-2580934(+)$1	339	54	58	11.9999
HHHH	chr7:5569289-5569537(-)$1	248	22	26	11.9999
ffff	chr19:2270568-2270794(+)$1	226	63	67	11.9999
ccoo	chr8:144566868-144567119(-)$1	251	201	205	11.9999
ffcc	chr19:1416336-1416617(+)$1	281	205	209	11.9999
mddd	chr11:2005485-2005800(+)$1	315	75	79	11.9999
ffff	chr11:2400250-2400496(+)$1	246	14	18	11.9999
{FFF	chr11:557748-558010(+)$1	262	2	6	11.9999
:CCC	chr22:50018399-50018709(-)$1	310	32	36	11.9999
::FF	chr17:76116726-76116953(-)$1	227	8	12	11.9999
CCCK	chr15:23086204-23086501(-)$1	297	8	12	11.9999
FFFF	chr21:46954288-46954555(-)$1	267	40	44	11.9999
2ccc	chr19:3543069-3543335(-)$1	266	131	135	11.9999
DDDD	chr19:1433639-1433874(+)$1	235	14	18	11.9999
]eee	chr2:172379715-172379968(+)$1	253	78	82	11.9999
]ccc	chr5:154135352-154135593(+)$1	241	60	64	11.9999
EEEE	chr22:20110054-20110315(+)$1	261	71	75	11.9999
====	chr17:76117142-76117453(-)$1	311	135	139	11.9999
ddEE	chr11:637278-637537(+)$1	259	9	13	11.9999
KKCC	chr19:14273421-14273669(+)$1	248	14	18	11.9999
HHOO	chrX:152957466-152957750(+)$1	284	6	10	11.9999
FFFD	chr20:31172308-31172546(-)$1	238	53	57	11.9999
cqqq	chr17:79385262-79385502(+)$1	240	4	8	11.9999
eee[	chr16:31724701-31724982(+)$1	281	145	149	11.9999
cccc	chr11:126146291-126146529(+)$1	238	17	21	11.9999
]bb]	chrX:152938524-152938824(-)$1	300	233	237	11.9999
eee]	chr16:448097-448371(+)$1	274	200	204	11.9999
bbcc	chr1:1190482-1190692(-)$1	210	23	27	11.9999
ccc2	chr14:104165104-104165389(+)$1	285	205	209	11.9999
dddd	chr19:36523007-36523336(+)$1	329	25	29	11.9999
####	chr19:55856218-55856478(+)$1	260	168	172	11.9999
bb]d	chr22:50020347-50020610(-)$1	263	145	149	11.9999
bbcc	chr22:37622737-37623078(-)$1	341	178	182	11.9999
::::	chr1:1691151-1691409(-)$1	258	39	43	11.9999
2bb3	chrX:152939467-152939804(-)$1	337	105	109	11.9999
eeee	chr19:18547792-18548093(-)$1	301	74	78	11.9999
F}EE	chr7:77166711-77166985(+)$1	274	236	240	11.9999
HHHH	chr16:4431716-4431974(-)$1	258	241	245	11.9999
dddc	chr16:85392784-85393080(+)$1	296	58	62	11.9999
dddd	chr17:80789394-80789647(+)$1	253	68	72	11.9999
dddc	chr21:45562978-45563236(+)$1	258	229	233	11.9999
HHH:	chr11:3069073-3069311(-)$1	238	37	41	11.9999
GGGG	chr19:18548472-18548747(-)$1	275	7	11	11.9999
cccc	chr16:89643723-89644054(+)$1	331	57	61	11.9999
eeoo	chr7:127670360-127670609(+)$1	249	12	16	11.9999
gggg	chr11:639270-639549(+)$1	279	24	28	11.9999
eeee	chr11:1309661-1309955(-)$1	294	167	171	11.9999
lccc	chr20:32251201-32251446(-)$1	245	16	20	11.9999
ccc"	chr7:1887149-1887398(-)$1	249	24	28	11.9999
eebb	chr16:1835523-1835781(+)$1	258	67	71	11.9999
GGGG	chr16:4664672-4664952(-)$1	280	256	260	11.9999
{FFF	chr1:155658041-155658333(-)$1	292	35	39	11.9999
GGGG	chr19:577689-577966(+)$1	277	30	34	11.9999
ccca	chr3:49049845-49050125(+)$1	280	37	41	11.9999
dddd	chr22:50646902-50647154(+)$1	252	115	119	11.9999
}CCC	chr17:80788496-80788787(+)$1	291	157	161	11.9999
EEEE	chr9:101867329-101867617(+)$1	288	2	6	11.9999
HHHH	chr15:80214936-80215252(-)$1	316	0	4	11.9999
eeee	chr12:133295286-133295547(+)$1	261	237	241	11.9999
EEEE	chr17:80054218-80054516(-)$1	298	21	25	11.9999
GLLL	chr7:923820-924052(+)$1	232	30	34	11.9999
IIII	chr17:46627702-46628017(+)$1	315	123	127	11.9999
!ccc	chr22:50018199-50018437(-)$1	238	128	132	11.9999
ffff	chr19:1468752-1469027(-)$1	275	31	35	11.9999
fff+	chr19:1475380-1475619(-)$1	239	71	75	11.9999
dddd	chr11:126146194-126146433(+)$1	239	114	118	11.9999
cccc	chr11:63884393-63884647(-)$1	254	248	252	11.9999
FFF:	chr4:891781-892047(-)$1	266	10	14	11.9999
HHHF	chr17:36861787-36862080(+)$1	293	14	18	11.9999
hhhh	chr16:4431602-4431878(-)$1	276	145	149	11.9999
dddd	chr22:50017035-50017299(-)$1	264	173	177	11.9999
eeee	chr2:242839124-242839440(+)$1	316	148	152	11.9999
ccc[	chr19:18548350-18548616(-)$1	266	82	86	11.9999
2eee	chr16:725957-726270(+)$1	313	128	132	11.9999
mmmf	chr11:1983449-1983695(+)$1	246	113	117	11.9999
EEEK	chr19:1467744-1467982(-)$1	238	50	54	11.9999
ffmm	chr11:2407199-2407452(+)$1	253	53	57	11.9999
CCC{	chr9:139756783-139757022(-)$1	239	106	110	11.9999
iiii	chr11:558491-558758(+)$1	267	135	139	11.9999
]ddd	chr19:10222217-10222508(+)$1	291	102	106	11.9999
KABB	chr7:127670525-127670759(+)$1	234	41	45	11.9999
cccl	chr5:154135495-154135744(+)$1	249	45	49	11.9999
fppp	chr19:863004-863284(+)$1	280	57	61	11.9999
FFKK	chr20:32255370-32255636(-)$1	266	54	58	11.9999

#DB
)).)	chr12:132402968-132403223(+)$1	1	48	52	11.9999
.(((	chr4:1317277-1317526(+)$1	1	133	137	11.9999
))))	chr1:228329268-228329579(+)$1	1	150	154	11.9999
.(((	chr1:36788084-36788341(+)$1	1	18	22	11.9999
((((	chr19:41312888-41313167(+)$1	1	31	35	11.9999
))))	chr19:1468350-1468635(-)$1	1	70	74	11.9999
))))	chr19:36517709-36517988(+)$1	1	136	140	11.9999
))))	chr11:63883596-63883850(-)$1	1	133	137	11.9999
((((	chr22:50016818-50017058(-)$1	1	21	25	11.9999
((((	chr22:45130936-45131204(+)$1	1	80	84	11.9999
((((	chr16:2580595-2580934(+)$1	1	54	58	11.9999
((((	chr7:5569289-5569537(-)$1	1	22	26	11.9999
((((	chr19:2270568-2270794(+)$1	1	63	67	11.9999
((..	chr8:144566868-144567119(-)$1	1	201	205	11.9999
((((	chr19:1416336-1416617(+)$1	1	205	209	11.9999
.)))	chr11:2005485-2005800(+)$1	1	75	79	11.9999
((((	chr11:2400250-2400496(+)$1	1	14	18	11.9999
.(((	chr11:557748-558010(+)$1	1	2	6	11.9999
.(((	chr22:50018399-50018709(-)$1	1	32	36	11.9999
..((	chr17:76116726-76116953(-)$1	1	8	12	11.9999
(((.	chr15:23086204-23086501(-)$1	1	8	12	11.9999
((((	chr21:46954288-46954555(-)$1	1	40	44	11.9999
.)))	chr19:3543069-3543335(-)$1	1	131	135	11.9999
((((	chr19:1433639-1433874(+)$1	1	14	18	11.9999
.)))	chr2:172379715-172379968(+)$1	1	78	82	11.9999
.)))	chr5:154135352-154135593(+)$1	1	60	64	11.9999
((((	chr22:20110054-20110315(+)$1	1	71	75	11.9999
))))	chr17:76117142-76117453(-)$1	1	135	139	11.9999
))((	chr11:637278-637537(+)$1	1	9	13	11.9999
..((	chr19:14273421-14273669(+)$1	1	14	18	11.9999
((..	chrX:152957466-152957750(+)$1	1	6	10	11.9999
((((	chr20:31172308-31172546(-)$1	1	53	57	11.9999
(...	chr17:79385262-79385502(+)$1	1	4	8	11.9999
(((.	chr16:31724701-31724982(+)$1	1	145	149	11.9999
((((	chr11:126146291-126146529(+)$1	1	17	21	11.9999
.)).	chrX:152938524-152938824(-)$1	1	233	237	11.9999
))).	chr16:448097-448371(+)$1	1	200	204	11.9999
((((	chr1:1190482-1190692(-)$1	1	23	27	11.9999
))).	chr14:104165104-104165389(+)$1	1	205	209	11.9999
((((	chr19:36523007-36523336(+)$1	1	25	29	11.9999
....	chr19:55856218-55856478(+)$1	1	168	172	11.9999
)).)	chr22:50020347-50020610(-)$1	1	145	149	11.9999
))))	chr22:37622737-37623078(-)$1	1	178	182	11.9999
....	chr1:1691151-1691409(-)$1	1	39	43	11.9999
.)).	chrX:152939467-152939804(-)$1	1	105	109	11.9999
((((	chr19:18547792-18548093(-)$1	1	74	78	11.9999
).))	chr7:77166711-77166985(+)$1	1	236	240	11.9999
))))	chr16:4431716-4431974(-)$1	1	241	245	11.9999
((((	chr16:85392784-85393080(+)$1	1	58	62	11.9999
((((	chr17:80789394-80789647(+)$1	1	68	72	11.9999
))))	chr21:45562978-45563236(+)$1	1	229	233	11.9999
(((.	chr11:3069073-3069311(-)$1	1	37	41	11.9999
((((	chr19:18548472-18548747(-)$1	1	7	11	11.9999
)))(	chr16:89643723-89644054(+)$1	1	57	61	11.9999
((..	chr7:127670360-127670609(+)$1	1	12	16	11.9999
((((	chr11:639270-639549(+)$1	1	24	28	11.9999
))))	chr11:1309661-1309955(-)$1	1	167	171	11.9999
.)))	chr20:32251201-32251446(-)$1	1	16	20	11.9999
(((.	chr7:1887149-1887398(-)$1	1	24	28	11.9999
))))	chr16:1835523-1835781(+)$1	1	67	71	11.9999
))))	chr16:4664672-4664952(-)$1	1	256	260	11.9999
.(((	chr1:155658041-155658333(-)$1	1	35	39	11.9999
((((	chr19:577689-577966(+)$1	1	30	34	11.9999
((((	chr3:49049845-49050125(+)$1	1	37	41	11.9999
))))	chr22:50646902-50647154(+)$1	1	115	119	11.9999
.)))	chr17:80788496-80788787(+)$1	1	157	161	11.9999
((((	chr9:101867329-101867617(+)$1	1	2	6	11.9999
((((	chr15:80214936-80215252(-)$1	1	0	4	11.9999
))))	chr12:133295286-133295547(+)$1	1	237	241	11.9999
((((	chr17:80054218-80054516(-)$1	1	21	25	11.9999
(...	chr7:923820-924052(+)$1	1	30	34	11.9999
((((	chr17:46627702-46628017(+)$1	1	123	127	11.9999
.(((	chr22:50018199-50018437(-)$1	1	128	132	11.9999
))))	chr19:1468752-1469027(-)$1	1	31	35	11.9999
(((.	chr19:1475380-1475619(-)$1	1	71	75	11.9999
))))	chr11:126146194-126146433(+)$1	1	114	118	11.9999
))))	chr11:63884393-63884647(-)$1	1	248	252	11.9999
(((.	chr4:891781-892047(-)$1	1	10	14	11.9999
((((	chr17:36861787-36862080(+)$1	1	14	18	11.9999
((((	chr16:4431602-4431878(-)$1	1	145	149	11.9999
((((	chr22:50017035-50017299(-)$1	1	173	177	11.9999
))))	chr2:242839124-242839440(+)$1	1	148	152	11.9999
(((.	chr19:18548350-18548616(-)$1	1	82	86	11.9999
.)))	chr16:725957-726270(+)$1	1	128	132	11.9999
...)	chr11:1983449-1983695(+)$1	1	113	117	11.9999
(((.	chr19:1467744-1467982(-)$1	1	50	54	11.9999
((..	chr11:2407199-2407452(+)$1	1	53	57	11.9999
(((.	chr9:139756783-139757022(-)$1	1	106	110	11.9999
))))	chr11:558491-558758(+)$1	1	135	139	11.9999
.)))	chr19:10222217-10222508(+)$1	1	102	106	11.9999
.(((	chr7:127670525-127670759(+)$1	1	41	45	11.9999
(((.	chr5:154135495-154135744(+)$1	1	45	49	11.9999
(...	chr19:863004-863284(+)$1	1	57	61	11.9999
((..	chr20:32255370-32255636(-)$1	1	54	58	11.9999

#PSSM
G : 0.92	g : 0.07	
C : 0.92	c : 0.07	
C : 0.91	c : 0.08	
C : 0.91	c : 0.08	

#score	1127.9999999999998
#seq	94
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_UTR_m2_run1.nuc.txt

#NT
GGA	chr16:1360089-1360339(+)$1	250	22	25	9.0000
GGA	chr1:20235585-20235827(+)$1	242	78	81	9.0000
GGA	chr1:20235810-20236025(+)$1	215	7	10	9.0000
GGA	chr1:20235025-20235264(+)$1	239	9	12	9.0000
GGA	chr1:246646837-246647078(-)$1	241	4	7	9.0000
GGA	chr2:169721739-169721991(-)$1	252	56	59	9.0000
GGA	chr7:104752495-104752757(-)$1	262	34	37	9.0000
GGA	chr7:104752407-104752657(-)$1	250	24	27	9.0000
GGA	chr1:20235671-20235937(+)$1	266	29	32	9.0000
GGA	chr1:20236681-20236934(+)$1	253	31	34	9.0000
GGA	chr7:104752274-104752544(-)$1	270	13	16	9.0000
GGA	chr11:120207732-120208063(+)$1	331	22	25	9.0000
GGA	chr15:28508123-28508384(-)$1	261	86	89	9.0000
GGA	chr1:20236166-20236405(+)$1	239	141	144	9.0000
GGA	chr12:49085194-49085430(-)$1	236	52	55	9.0000
GGA	chr17:29632159-29632448(+)$1	289	2	5	9.0000
GGA	chr17:79507613-79507843(-)$1	230	75	78	9.0000
GGA	chr1:40840181-40840450(+)$1	269	55	58	9.0000
GGA	chr17:29632440-29632688(+)$1	248	23	26	9.0000
GGA	chr1:20234862-20235130(+)$1	268	9	12	9.0000
gga	chr16:81031841-81032055(-)$1	214	38	41	9.0000
GGA	chr5:151151923-151152181(+)$1	258	60	63	9.0000
GGA	chr3:197476852-197477158(+)$1	306	17	20	9.0000
GGA	chr12:49085095-49085321(-)$1	226	108	111	9.0000
GGA	chr20:23357353-23357589(-)$1	236	2	5	9.0000
GGA	chr12:133404759-133405024(-)$1	265	4	7	9.0000
GGA	chr1:15988711-15988966(+)$1	255	45	48	9.0000
GGA	chr17:29632280-29632538(+)$1	258	183	186	9.0000
GGA	chr8:102217052-102217370(-)$1	318	27	30	9.0000
GGA	chr19:9785537-9785788(-)$1	251	0	3	9.0000
GGA	chr7:104753068-104753344(-)$1	276	40	43	9.0000
GGA	chr22:45714200-45714466(+)$1	266	56	59	9.0000
GGA	chr1:20234939-20235191(+)$1	252	12	15	9.0000
GGA	chr7:923631-923877(+)$1	246	62	65	9.0000
GGA	chr20:34252564-34252818(-)$1	254	14	17	9.0000
GGA	chr1:20237098-20237344(+)$1	246	92	95	9.0000
GGA	chr15:93443364-93443621(+)$1	257	15	18	9.0000
GGA	chr1:20236622-20236849(+)$1	227	7	10	9.0000
GGA	chr3:17741296-17741607(-)$1	311	5	8	9.0000
gga	chr4:1386517-1386792(+)$1	275	12	15	9.0000
GGA	chr11:3010357-3010617(-)$1	260	64	67	9.0000
GGA	chr10:98984780-98985033(-)$1	253	54	57	9.0000
GGA	chr20:23357389-23357623(-)$1	234	36	39	9.0000
GGA	chr12:133404892-133405105(-)$1	213	85	88	9.0000
GGA	chr1:20237218-20237509(+)$1	291	1	4	9.0000
GGA	chr10:90580133-90580359(+)$1	226	13	16	9.0000
GGA	chr7:104752577-104752880(-)$1	303	22	25	9.0000
GGA	chr10:103577977-103578211(-)$1	234	12	15	9.0000
GGA	chr11:3011088-3011328(-)$1	240	32	35	9.0000
GGA	chr12:49084936-49085236(-)$1	300	23	26	9.0000
GGA	chr9:33935558-33935803(-)$1	245	18	21	9.0000
GGA	chr5:137688299-137688597(+)$1	298	73	76	9.0000
GGA	chr1:20235102-20235313(+)$1	211	4	7	9.0000
GGA	chr2:223726327-223726577(+)$1	250	46	49	9.0000
GGA	chr1:246646682-246646929(-)$1	247	164	167	9.0000
GGA	chr12:49085681-49085904(-)$1	223	35	38	9.0000
GGA	chr4:3513056-3513333(-)$1	277	22	25	9.0000
GGA	chr11:3010980-3011203(-)$1	223	21	24	9.0000
gga	chr4:1386821-1387063(+)$1	242	19	22	9.0000
GGA	chr2:61763616-61763853(-)$1	237	64	67	9.0000
gga	chr1:155532349-155532628(-)$1	279	2	5	9.0000
GGA	chr1:20236808-20237048(+)$1	240	4	7	9.0000
GGA	chr7:104752960-104753191(-)$1	231	50	53	9.0000
GGA	chr5:112350348-112350588(+)$1	240	13	16	9.0000
GGA	chr1:20235995-20236245(+)$1	250	3	6	9.0000
GGA	chr16:2028578-2028786(+)$1	208	23	26	9.0000
GGA	chr11:3011271-3011531(-)$1	260	235	238	9.0000
gga	chr11:14358563-14358806(-)$1	243	136	139	9.0000
GGA	chr1:155532054-155532297(-)$1	243	23	26	9.0000
GGA	chr1:155658346-155658600(-)$1	254	6	9	9.0000
GGA	chr21:38458801-38459057(+)$1	256	115	118	9.0000
GGA	chr3:196075382-196075634(-)$1	252	74	77	9.0000
gga	chr2:169721822-169722137(-)$1	315	39	42	9.0000
GGA	chr1:20236103-20236366(+)$1	263	204	207	9.0000
gga	chr11:88056656-88056906(-)$1	250	71	74	9.0000
GGA	chr21:30671610-30671852(+)$1	242	155	158	9.0000
GGA	chr1:246646952-246647228(-)$1	276	6	9	9.0000
GGA	chr1:225614985-225615269(-)$1	284	47	50	9.0000
gga	chr20:30947293-30947530(+)$1	237	3	6	9.0000
gga	chr1:27022737-27022991(+)$1	254	1	4	9.0000
GGA	chr21:30671967-30672219(+)$1	252	67	70	9.0000
GGA	chr7:104752833-104753078(-)$1	245	58	61	9.0000
GGA	chr12:54630888-54631140(-)$1	252	11	14	9.0000
GGA	chr19:57862812-57863090(+)$1	278	6	9	9.0000
GGA	chr1:155658225-155658511(-)$1	286	4	7	9.0000
gga	chr11:3011845-3012071(-)$1	226	10	13	9.0000
GGA	chr16:2028586-2028798(+)$1	212	15	18	9.0000
GGA	chr1:20235285-20235518(+)$1	233	52	55	9.0000
GGA	chr20:23357259-23357550(-)$1	291	140	143	9.0000
gga	chr1:207523414-207523643(+)$1	229	102	105	9.0000
GGA	chr1:20235825-20236060(+)$1	235	5	8	9.0000
gga	chr4:1386696-1386961(+)$1	265	85	88	9.0000
GGA	chr17:29632117-29632359(+)$1	242	9	12	9.0000
GGA	chr1:20235206-20235454(+)$1	248	61	64	9.0000
GGA	chr7:155571386-155571628(+)$1	242	7	10	9.0000
GGA	chr1:20236791-20237008(+)$1	217	12	15	9.0000
GGA	chr20:23355375-23355619(-)$1	244	49	52	9.0000

#otherMatches

#Struct PSSM
H:g	chr4:1386063-1386340(+)$1	277	132	135	9.0000
FFF	chr16:1360089-1360339(+)$1	250	22	25	9.0000
{DD	chr1:20235585-20235827(+)$1	242	78	81	9.0000
ccc	chr1:20235810-20236025(+)$1	215	7	10	9.0000
GGG	chr1:20235025-20235264(+)$1	239	9	12	9.0000
bb"	chr1:246646837-246647078(-)$1	241	4	7	9.0000
ccc	chr2:169721739-169721991(-)$1	252	56	59	9.0000
fff	chr7:104752495-104752757(-)$1	262	34	37	9.0000
JJJ	chr7:104752407-104752657(-)$1	250	24	27	9.0000
fff	chr1:20235671-20235937(+)$1	266	29	32	9.0000
fff	chr1:20236681-20236934(+)$1	253	31	34	9.0000
)))	chr7:104752274-104752544(-)$1	270	13	16	9.0000
hhh	chr11:120207732-120208063(+)$1	331	22	25	9.0000
]dd	chr15:28508123-28508384(-)$1	261	86	89	9.0000
mmm	chr1:20236166-20236405(+)$1	239	141	144	9.0000
iii	chr12:49085194-49085430(-)$1	236	52	55	9.0000
:::	chr17:29632159-29632448(+)$1	289	2	5	9.0000
cc2	chr17:79507613-79507843(-)$1	230	75	78	9.0000
gg:	chr1:40840181-40840450(+)$1	269	55	58	9.0000
e[b	chr17:29632440-29632688(+)$1	248	23	26	9.0000
dd[	chr1:20234862-20235130(+)$1	268	9	12	9.0000
>>>	chr16:81031841-81032055(-)$1	214	38	41	9.0000
eee	chr5:151151923-151152181(+)$1	258	60	63	9.0000
III	chr3:197476852-197477158(+)$1	306	17	20	9.0000
iii	chr12:49085095-49085321(-)$1	226	108	111	9.0000
eee	chr20:23357353-23357589(-)$1	236	2	5	9.0000
CC:	chr12:133404759-133405024(-)$1	265	4	7	9.0000
ddd	chr1:15988711-15988966(+)$1	255	45	48	9.0000
e[b	chr17:29632280-29632538(+)$1	258	183	186	9.0000
bb!	chr8:102217052-102217370(-)$1	318	27	30	9.0000
DDD	chr19:9785537-9785788(-)$1	251	0	3	9.0000
[a[	chr7:104753068-104753344(-)$1	276	40	43	9.0000
ccc	chr22:45714200-45714466(+)$1	266	56	59	9.0000
===	chr1:20234939-20235191(+)$1	252	12	15	9.0000
d!!	chr7:923631-923877(+)$1	246	62	65	9.0000
BBK	chr20:34252564-34252818(-)$1	254	14	17	9.0000
ggg	chr1:20237098-20237344(+)$1	246	92	95	9.0000
::J	chr15:93443364-93443621(+)$1	257	15	18	9.0000
KKC	chr1:20236622-20236849(+)$1	227	7	10	9.0000
GGG	chr3:17741296-17741607(-)$1	311	5	8	9.0000
fff	chr4:1386517-1386792(+)$1	275	12	15	9.0000
e[e	chr11:3010357-3010617(-)$1	260	64	67	9.0000
ppp	chr10:98984780-98985033(-)$1	253	54	57	9.0000
Cee	chr20:23357389-23357623(-)$1	234	36	39	9.0000
ggg	chr12:133404892-133405105(-)$1	213	85	88	9.0000
:FF	chr1:20237218-20237509(+)$1	291	1	4	9.0000
EEK	chr10:90580133-90580359(+)$1	226	13	16	9.0000
ddd	chr7:104752577-104752880(-)$1	303	22	25	9.0000
CCR	chr10:103577977-103578211(-)$1	234	12	15	9.0000
GGG	chr11:3011088-3011328(-)$1	240	32	35	9.0000
ddd	chr12:49084936-49085236(-)$1	300	23	26	9.0000
bb:	chr9:33935558-33935803(-)$1	245	18	21	9.0000
{BB	chr5:137688299-137688597(+)$1	298	73	76	9.0000
III	chr1:20235102-20235313(+)$1	211	4	7	9.0000
ff2	chr2:223726327-223726577(+)$1	250	46	49	9.0000
JJJ	chr1:246646682-246646929(-)$1	247	164	167	9.0000
JJJ	chr12:49085681-49085904(-)$1	223	35	38	9.0000
EEE	chr4:3513056-3513333(-)$1	277	22	25	9.0000
[hh	chr11:3010980-3011203(-)$1	223	21	24	9.0000
DDD	chr4:1386821-1387063(+)$1	242	19	22	9.0000
JJJ	chr2:61763616-61763853(-)$1	237	64	67	9.0000
:::	chr1:155532349-155532628(-)$1	279	2	5	9.0000
:::	chr1:20236808-20237048(+)$1	240	4	7	9.0000
b]c	chr7:104752960-104753191(-)$1	231	50	53	9.0000
:::	chr5:112350348-112350588(+)$1	240	13	16	9.0000
:::	chr1:20235995-20236245(+)$1	250	3	6	9.0000
ccc	chr16:2028578-2028786(+)$1	208	23	26	9.0000
eee	chr11:3011271-3011531(-)$1	260	235	238	9.0000
DDD	chr11:14358563-14358806(-)$1	243	136	139	9.0000
ccc	chr1:155532054-155532297(-)$1	243	23	26	9.0000
LLL	chr1:155658346-155658600(-)$1	254	6	9	9.0000
ggg	chr21:38458801-38459057(+)$1	256	115	118	9.0000
b!!	chr3:196075382-196075634(-)$1	252	74	77	9.0000
DDD	chr2:169721822-169722137(-)$1	315	39	42	9.0000
mmm	chr1:20236103-20236366(+)$1	263	204	207	9.0000
cc"	chr11:88056656-88056906(-)$1	250	71	74	9.0000
ooo	chr21:30671610-30671852(+)$1	242	155	158	9.0000
mmm	chr1:246646952-246647228(-)$1	276	6	9	9.0000
nnn	chr1:225614985-225615269(-)$1	284	47	50	9.0000
:::	chr20:30947293-30947530(+)$1	237	3	6	9.0000
:::	chr1:27022737-27022991(+)$1	254	1	4	9.0000
fff	chr21:30671967-30672219(+)$1	252	67	70	9.0000
ddd	chr7:104752833-104753078(-)$1	245	58	61	9.0000
IIh	chr12:54630888-54631140(-)$1	252	11	14	9.0000
ccc	chr19:57862812-57863090(+)$1	278	6	9	9.0000
:::	chr1:155658225-155658511(-)$1	286	4	7	9.0000
dtt	chr11:3011845-3012071(-)$1	226	10	13	9.0000
ccc	chr16:2028586-2028798(+)$1	212	15	18	9.0000
cc:	chr1:20235285-20235518(+)$1	233	52	55	9.0000
c]i	chr20:23357259-23357550(-)$1	291	140	143	9.0000
ccs	chr1:207523414-207523643(+)$1	229	102	105	9.0000
F:c	chr1:20235825-20236060(+)$1	235	5	8	9.0000
===	chr4:1386696-1386961(+)$1	265	85	88	9.0000
b((	chr17:29632117-29632359(+)$1	242	9	12	9.0000
ccc	chr1:20235206-20235454(+)$1	248	61	64	9.0000
:ii	chr7:155571386-155571628(+)$1	242	7	10	9.0000
+++	chr1:20236791-20237008(+)$1	217	12	15	9.0000
CLL	chr20:23355375-23355619(-)$1	244	49	52	9.0000

#DB
).(	chr4:1386063-1386340(+)$1	1	132	135	9.0000
(((	chr16:1360089-1360339(+)$1	1	22	25	9.0000
.((	chr1:20235585-20235827(+)$1	1	78	81	9.0000
(((	chr1:20235810-20236025(+)$1	1	7	10	9.0000
(((	chr1:20235025-20235264(+)$1	1	9	12	9.0000
((.	chr1:246646837-246647078(-)$1	1	4	7	9.0000
(((	chr2:169721739-169721991(-)$1	1	56	59	9.0000
)))	chr7:104752495-104752757(-)$1	1	34	37	9.0000
(((	chr7:104752407-104752657(-)$1	1	24	27	9.0000
(((	chr1:20235671-20235937(+)$1	1	29	32	9.0000
(((	chr1:20236681-20236934(+)$1	1	31	34	9.0000
...	chr7:104752274-104752544(-)$1	1	13	16	9.0000
)))	chr11:120207732-120208063(+)$1	1	22	25	9.0000
.))	chr15:28508123-28508384(-)$1	1	86	89	9.0000
...	chr1:20236166-20236405(+)$1	1	141	144	9.0000
)))	chr12:49085194-49085430(-)$1	1	52	55	9.0000
...	chr17:29632159-29632448(+)$1	1	2	5	9.0000
)).	chr17:79507613-79507843(-)$1	1	75	78	9.0000
)).	chr1:40840181-40840450(+)$1	1	55	58	9.0000
(.(	chr17:29632440-29632688(+)$1	1	23	26	9.0000
((.	chr1:20234862-20235130(+)$1	1	9	12	9.0000
...	chr16:81031841-81032055(-)$1	1	38	41	9.0000
(((	chr5:151151923-151152181(+)$1	1	60	63	9.0000
(((	chr3:197476852-197477158(+)$1	1	17	20	9.0000
(((	chr12:49085095-49085321(-)$1	1	108	111	9.0000
(((	chr20:23357353-23357589(-)$1	1	2	5	9.0000
((.	chr12:133404759-133405024(-)$1	1	4	7	9.0000
(((	chr1:15988711-15988966(+)$1	1	45	48	9.0000
(.(	chr17:29632280-29632538(+)$1	1	183	186	9.0000
((.	chr8:102217052-102217370(-)$1	1	27	30	9.0000
(((	chr19:9785537-9785788(-)$1	1	0	3	9.0000
.(.	chr7:104753068-104753344(-)$1	1	40	43	9.0000
(((	chr22:45714200-45714466(+)$1	1	56	59	9.0000
(((	chr1:20234939-20235191(+)$1	1	12	15	9.0000
(..	chr7:923631-923877(+)$1	1	62	65	9.0000
((.	chr20:34252564-34252818(-)$1	1	14	17	9.0000
)))	chr1:20237098-20237344(+)$1	1	92	95	9.0000
..(	chr15:93443364-93443621(+)$1	1	15	18	9.0000
..(	chr1:20236622-20236849(+)$1	1	7	10	9.0000
(((	chr3:17741296-17741607(-)$1	1	5	8	9.0000
(((	chr4:1386517-1386792(+)$1	1	12	15	9.0000
(.(	chr11:3010357-3010617(-)$1	1	64	67	9.0000
...	chr10:98984780-98985033(-)$1	1	54	57	9.0000
(((	chr20:23357389-23357623(-)$1	1	36	39	9.0000
(((	chr12:133404892-133405105(-)$1	1	85	88	9.0000
.((	chr1:20237218-20237509(+)$1	1	1	4	9.0000
((.	chr10:90580133-90580359(+)$1	1	13	16	9.0000
(((	chr7:104752577-104752880(-)$1	1	22	25	9.0000
((.	chr10:103577977-103578211(-)$1	1	12	15	9.0000
(((	chr11:3011088-3011328(-)$1	1	32	35	9.0000
)))	chr12:49084936-49085236(-)$1	1	23	26	9.0000
)).	chr9:33935558-33935803(-)$1	1	18	21	9.0000
.((	chr5:137688299-137688597(+)$1	1	73	76	9.0000
(((	chr1:20235102-20235313(+)$1	1	4	7	9.0000
)).	chr2:223726327-223726577(+)$1	1	46	49	9.0000
)))	chr1:246646682-246646929(-)$1	1	164	167	9.0000
(((	chr12:49085681-49085904(-)$1	1	35	38	9.0000
(((	chr4:3513056-3513333(-)$1	1	22	25	9.0000
.((	chr11:3010980-3011203(-)$1	1	21	24	9.0000
(((	chr4:1386821-1387063(+)$1	1	19	22	9.0000
(((	chr2:61763616-61763853(-)$1	1	64	67	9.0000
...	chr1:155532349-155532628(-)$1	1	2	5	9.0000
...	chr1:20236808-20237048(+)$1	1	4	7	9.0000
).)	chr7:104752960-104753191(-)$1	1	50	53	9.0000
...	chr5:112350348-112350588(+)$1	1	13	16	9.0000
...	chr1:20235995-20236245(+)$1	1	3	6	9.0000
(((	chr16:2028578-2028786(+)$1	1	23	26	9.0000
)))	chr11:3011271-3011531(-)$1	1	235	238	9.0000
)))	chr11:14358563-14358806(-)$1	1	136	139	9.0000
)))	chr1:155532054-155532297(-)$1	1	23	26	9.0000
...	chr1:155658346-155658600(-)$1	1	6	9	9.0000
)))	chr21:38458801-38459057(+)$1	1	115	118	9.0000
(..	chr3:196075382-196075634(-)$1	1	74	77	9.0000
(((	chr2:169721822-169722137(-)$1	1	39	42	9.0000
...	chr1:20236103-20236366(+)$1	1	204	207	9.0000
((.	chr11:88056656-88056906(-)$1	1	71	74	9.0000
...	chr21:30671610-30671852(+)$1	1	155	158	9.0000
...	chr1:246646952-246647228(-)$1	1	6	9	9.0000
...	chr1:225614985-225615269(-)$1	1	47	50	9.0000
...	chr20:30947293-30947530(+)$1	1	3	6	9.0000
...	chr1:27022737-27022991(+)$1	1	1	4	9.0000
(((	chr21:30671967-30672219(+)$1	1	67	70	9.0000
)))	chr7:104752833-104753078(-)$1	1	58	61	9.0000
(((	chr12:54630888-54631140(-)$1	1	11	14	9.0000
(((	chr19:57862812-57863090(+)$1	1	6	9	9.0000
...	chr1:155658225-155658511(-)$1	1	4	7	9.0000
(..	chr11:3011845-3012071(-)$1	1	10	13	9.0000
(((	chr16:2028586-2028798(+)$1	1	15	18	9.0000
)).	chr1:20235285-20235518(+)$1	1	52	55	9.0000
).)	chr20:23357259-23357550(-)$1	1	140	143	9.0000
((.	chr1:207523414-207523643(+)$1	1	102	105	9.0000
(.(	chr1:20235825-20236060(+)$1	1	5	8	9.0000
(((	chr4:1386696-1386961(+)$1	1	85	88	9.0000
(..	chr17:29632117-29632359(+)$1	1	9	12	9.0000
(((	chr1:20235206-20235454(+)$1	1	61	64	9.0000
.((	chr7:155571386-155571628(+)$1	1	7	10	9.0000
...	chr1:20236791-20237008(+)$1	1	12	15	9.0000
(..	chr20:23355375-23355619(-)$1	1	49	52	9.0000

#PSSM
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
A : 0.86	a : 0.13	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_transcript_m1_run1.nuc.txt

#NT
cuggag	chr22:42042942-42043185(+)$1	243	206	212	17.9999
CUGGAG	chr17:80039524-80039762(-)$1	238	153	159	17.9999
CUGGAG	chr1:186344003-186344312(-)$1	309	176	182	17.9999
CUGGAG	chr10:71143988-71144211(+)$1	223	24	30	17.9999
CUGGAG	chrX:53631567-53631819(-)$1	252	90	96	17.9999
CUGGAG	chr19:59060673-59060921(+)$1	248	168	174	17.9999
CUGGAG	chr17:80044254-80044484(-)$1	230	208	214	17.9999
CUGGAG	chr8:98656823-98657073(+)$1	250	34	40	17.9999
CUGGAG	chr14:65259739-65259985(-)$1	246	8	14	17.9999
CUGGAG	chr6:31599990-31600229(+)$1	239	11	17	17.9999
CUGGAG	chr16:29808174-29808456(+)$1	282	202	208	17.9999
CUGGAG	chrX:39931757-39932023(-)$1	266	125	131	17.9999
CUGGAG	chr22:23595971-23596263(+)$1	292	178	184	17.9999
CUGGAG	chr2:55646717-55646981(-)$1	264	23	29	17.9999
CUGGAG	chrX:153593144-153593382(-)$1	238	121	127	17.9999
CUGGAG	chr3:58139084-58139360(+)$1	276	256	262	17.9999
CUGGAG	chr19:52714479-52714728(+)$1	249	39	45	17.9999
CUGGAG	chr16:89346552-89346789(-)$1	237	23	29	17.9999
CUGGAG	chr14:102510578-102510798(+)$1	220	152	158	17.9999
CUGGAG	chr22:23523963-23524204(+)$1	241	3	9	17.9999
CUGGAG	chr17:80039388-80039633(-)$1	245	24	30	17.9999
CUGGAG	chr17:80045762-80045994(-)$1	232	95	101	17.9999
CUGGAG	chr19:11101725-11101977(+)$1	252	142	148	17.9999
CUGGAG	chr1:19464551-19464776(-)$1	225	179	185	17.9999
CUGGAG	chr17:80048153-80048375(-)$1	222	66	72	17.9999
CUGGAG	chr15:22999238-22999495(+)$1	257	60	66	17.9999
CUGGAG	chr11:118923357-118923640(-)$1	283	121	127	17.9999

#otherMatches

#Struct PSSM
eeeemm	chr1:220267669-220267924(+)$1	255	141	147	17.9999
dddnnn	chr22:42042942-42043185(+)$1	243	206	212	17.9999
33eeee	chr17:80039524-80039762(-)$1	238	153	159	17.9999
NNEEEE	chr1:186344003-186344312(-)$1	309	176	182	17.9999
FFFF{C	chr10:71143988-71144211(+)$1	223	24	30	17.9999
nndddd	chrX:53631567-53631819(-)$1	252	90	96	17.9999
dddJJJ	chr19:59060673-59060921(+)$1	248	168	174	17.9999
======	chr17:80044254-80044484(-)$1	230	208	214	17.9999
e:bb[d	chr8:98656823-98657073(+)$1	250	34	40	17.9999
eeee[b	chr14:65259739-65259985(-)$1	246	8	14	17.9999
DDDIII	chr6:31599990-31600229(+)$1	239	11	17	17.9999
ddddqq	chr16:29808174-29808456(+)$1	282	202	208	17.9999
ffffff	chrX:39931757-39932023(-)$1	266	125	131	17.9999
ee333d	chr22:23595971-23596263(+)$1	292	178	184	17.9999
DDDLLL	chr2:55646717-55646981(-)$1	264	23	29	17.9999
ppppee	chrX:153593144-153593382(-)$1	238	121	127	17.9999
b::HHH	chr3:58139084-58139360(+)$1	276	256	262	17.9999
GGGGG{	chr19:52714479-52714728(+)$1	249	39	45	17.9999
gggggg	chr16:89346552-89346789(-)$1	237	23	29	17.9999
"fffff	chr14:102510578-102510798(+)$1	220	152	158	17.9999
gggg[c	chr22:23523963-23524204(+)$1	241	3	9	17.9999
ddddFF	chr17:80039388-80039633(-)$1	245	24	30	17.9999
ggg]bb	chr17:80045762-80045994(-)$1	232	95	101	17.9999
dddmmm	chr19:11101725-11101977(+)$1	252	142	148	17.9999
55555e	chr1:19464551-19464776(-)$1	225	179	185	17.9999
dddd[c	chr17:80048153-80048375(-)$1	222	66	72	17.9999
cmmmmc	chr15:22999238-22999495(+)$1	257	60	66	17.9999
f[dddd	chr11:118923357-118923640(-)$1	283	121	127	17.9999

#DB
((((..	chr1:220267669-220267924(+)$1	1	141	147	17.9999
(((...	chr22:42042942-42043185(+)$1	1	206	212	17.9999
..))))	chr17:80039524-80039762(-)$1	1	153	159	17.9999
..((((	chr1:186344003-186344312(-)$1	1	176	182	17.9999
((((.(	chr10:71143988-71144211(+)$1	1	24	30	17.9999
..))))	chrX:53631567-53631819(-)$1	1	90	96	17.9999
))))))	chr19:59060673-59060921(+)$1	1	168	174	17.9999
))))))	chr17:80044254-80044484(-)$1	1	208	214	17.9999
).((.(	chr8:98656823-98657073(+)$1	1	34	40	17.9999
((((.(	chr14:65259739-65259985(-)$1	1	8	14	17.9999
((((((	chr6:31599990-31600229(+)$1	1	11	17	17.9999
((((..	chr16:29808174-29808456(+)$1	1	202	208	17.9999
((((((	chrX:39931757-39932023(-)$1	1	125	131	17.9999
))...)	chr22:23595971-23596263(+)$1	1	178	184	17.9999
(((...	chr2:55646717-55646981(-)$1	1	23	29	17.9999
....))	chrX:153593144-153593382(-)$1	1	121	127	17.9999
)..)))	chr3:58139084-58139360(+)$1	1	256	262	17.9999
(((((.	chr19:52714479-52714728(+)$1	1	39	45	17.9999
((((((	chr16:89346552-89346789(-)$1	1	23	29	17.9999
.(((((	chr14:102510578-102510798(+)$1	1	152	158	17.9999
((((.(	chr22:23523963-23524204(+)$1	1	3	9	17.9999
))))((	chr17:80039388-80039633(-)$1	1	24	30	17.9999
))).))	chr17:80045762-80045994(-)$1	1	95	101	17.9999
(((...	chr19:11101725-11101977(+)$1	1	142	148	17.9999
.....)	chr1:19464551-19464776(-)$1	1	179	185	17.9999
((((.(	chr17:80048153-80048375(-)$1	1	66	72	17.9999
(....)	chr15:22999238-22999495(+)$1	1	60	66	17.9999
(.((((	chr11:118923357-118923640(-)$1	1	121	127	17.9999

#PSSM
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	

#score	503.99999999999994
#seq	28
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_transcript_m2_run1.nuc.txt

#NT
uucu	chr17:7571951-7572249(-)$1	298	67	71	12.0000
UUCU	chr9:95012611-95012884(-)$1	273	213	217	12.0000
UUCU	chr8:134269162-134269420(-)$1	258	86	90	12.0000
UUCU	chr4:184192116-184192372(+)$1	256	71	75	12.0000
UUCU	chr6:35446935-35447213(-)$1	278	105	109	12.0000
UUCU	chr6:109591137-109591390(+)$1	253	56	60	12.0000
UUCU	chr6:144908692-144908955(+)$1	263	247	251	12.0000
UUCU	chr16:546960-547248(+)$1	288	236	240	12.0000
UUCU	chr17:30696796-30697037(+)$1	241	23	27	12.0000
UUCU	chr11:65203905-65204143(+)$1	238	73	77	12.0000
UUCU	chr2:70454801-70455083(-)$1	282	80	84	12.0000
UUCU	chr1:22828678-22828927(+)$1	249	24	28	12.0000
UUCU	chr6:43501725-43501978(-)$1	253	6	10	12.0000
UUCU	chrX:153627864-153628092(+)$1	228	82	86	12.0000
UUCU	chr2:128084191-128084504(-)$1	313	3	7	12.0000
UUCU	chr17:7080337-7080575(-)$1	238	151	155	12.0000
UUCU	chr20:33027836-33028134(+)$1	298	62	66	12.0000
UUCU	chr12:10862561-10862825(-)$1	264	53	57	12.0000
UUCU	chr2:208598552-208598809(+)$1	257	93	97	12.0000
UUCU	chr5:65451769-65452041(+)$1	272	51	55	12.0000
UUCU	chr14:24034439-24034699(-)$1	260	223	227	12.0000
UUCU	chr2:234178535-234178781(+)$1	246	38	42	12.0000
UUCU	chr3:9431922-9432168(-)$1	246	10	14	12.0000
UUCU	chr1:226053557-226053780(-)$1	223	2	6	12.0000
UUCU	chr16:52551265-52551525(-)$1	260	10	14	12.0000
UUCU	chr7:155573324-155573569(+)$1	245	239	243	12.0000
UUCU	chr10:7749055-7749260(+)$1	205	21	25	12.0000
uucu	chr11:65202028-65202242(+)$1	214	0	4	12.0000
UUCU	chr7:155573703-155573976(+)$1	273	203	207	12.0000
UUCU	chr14:24035485-24035731(-)$1	246	63	67	12.0000
UUCU	chr3:52838618-52838836(+)$1	218	81	85	12.0000
UUCU	chr14:35482901-35483162(+)$1	261	67	71	12.0000
UUCU	chr5:134126048-134126275(+)$1	227	37	41	12.0000
UUCU	chr11:47493559-47493831(-)$1	272	84	88	12.0000
UUCU	chr14:36169392-36169642(-)$1	250	42	46	12.0000
UUCU	chr15:63829364-63829617(+)$1	253	4	8	12.0000
UUCU	chr3:9516639-9516888(+)$1	249	56	60	12.0000
uucu	chr16:88728422-88728686(-)$1	264	84	88	12.0000
UUCU	chr5:38886195-38886522(+)$1	327	243	247	12.0000
UUCU	chr3:197581145-197581408(+)$1	263	82	86	12.0000
uucu	chrX:108887324-108887598(-)$1	274	94	98	12.0000
UUCU	chr12:121766159-121766421(-)$1	262	52	56	12.0000
UUCU	chr14:45565695-45565978(+)$1	283	14	18	12.0000
UUCU	chr10:121339382-121339656(-)$1	274	122	126	12.0000
UUCU	chr2:201778023-201778253(-)$1	230	35	39	12.0000
UUCU	chr20:47626654-47626926(+)$1	272	35	39	12.0000
UUCU	chr11:67946953-67947225(-)$1	272	1	5	12.0000
UUCU	chr12:69663188-69663426(+)$1	238	47	51	12.0000
UUCU	chr2:27425698-27425938(-)$1	240	158	162	12.0000
UUCU	chr2:209176826-209177106(+)$1	280	51	55	12.0000
UUCU	chr10:70515952-70516202(+)$1	250	60	64	12.0000
UUCU	chr2:179462319-179462608(+)$1	289	34	38	12.0000
UUCU	chr20:33437692-33437982(-)$1	290	19	23	12.0000
UUCU	chr2:191761188-191761462(+)$1	274	46	50	12.0000
UUCU	chr6:17785423-17785692(-)$1	269	128	132	12.0000
UUCU	chr20:33334568-33334838(-)$1	270	10	14	12.0000
UUCU	chr10:79579058-79579328(-)$1	270	83	87	12.0000
UUCU	chr12:72004729-72004985(-)$1	256	17	21	12.0000
UUCU	chr20:62572416-62572633(-)$1	217	40	44	12.0000
UUCU	chr11:10879326-10879588(-)$1	262	81	85	12.0000
UUCU	chr11:2943219-2943510(+)$1	291	87	91	12.0000
UUCU	chrX:23802321-23802545(+)$1	224	10	14	12.0000
UUCU	chr6:31500587-31500813(-)$1	226	7	11	12.0000
UUCU	chr17:73236351-73236603(-)$1	252	80	84	12.0000
UUCU	chr22:42294786-42295040(+)$1	254	29	33	12.0000
UUCU	chr10:70515903-70516152(+)$1	249	3	7	12.0000
UUCU	chr20:30136327-30136571(+)$1	244	7	11	12.0000
UUCU	chr16:8728779-8729046(+)$1	267	61	65	12.0000
UUCU	chr11:65191017-65191224(+)$1	207	103	107	12.0000
UUCU	chr2:209169464-209169754(+)$1	290	20	24	12.0000
UUCU	chr14:24031290-24031517(-)$1	227	82	86	12.0000
UUCU	chr20:17599225-17599442(-)$1	217	66	70	12.0000
uucu	chr14:24614851-24615110(-)$1	259	93	97	12.0000
UUCU	chr14:39618641-39618894(-)$1	253	52	56	12.0000
uucu	chr6:36507843-36508092(-)$1	249	65	69	12.0000
UUCU	chr17:56076659-56076981(-)$1	322	63	67	12.0000
UUCU	chr7:138209883-138210130(+)$1	247	3	7	12.0000
UUCU	chr1:19437012-19437281(-)$1	269	104	108	12.0000
UUCU	chr8:30567271-30567526(-)$1	255	242	246	12.0000
UUCU	chr14:24910836-24911115(-)$1	279	103	107	12.0000
UUCU	chrX:151127032-151127292(-)$1	260	3	7	12.0000
UUCU	chr11:63714300-63714560(+)$1	260	106	110	12.0000
UUCU	chr8:19708995-19709292(+)$1	297	30	34	12.0000
UUCU	chr6:168348409-168348716(+)$1	307	241	245	12.0000
UUCU	chr6:4064484-4064745(+)$1	261	77	81	12.0000

#otherMatches

#Struct PSSM
yyyy	chr11:70255824-70256090(+)$1	266	34	38	12.0000
^^^^	chr17:7571951-7572249(-)$1	298	67	71	12.0000
uuuu	chr9:95012611-95012884(-)$1	273	213	217	12.0000
uuuu	chr8:134269162-134269420(-)$1	258	86	90	12.0000
e22c	chr4:184192116-184192372(+)$1	256	71	75	12.0000
EELL	chr6:35446935-35447213(-)$1	278	105	109	12.0000
e]cc	chr6:109591137-109591390(+)$1	253	56	60	12.0000
}BBC	chr6:144908692-144908955(+)$1	263	247	251	12.0000
hhhh	chr16:546960-547248(+)$1	288	236	240	12.0000
::::	chr17:30696796-30697037(+)$1	241	23	27	12.0000
^^^^	chr11:65203905-65204143(+)$1	238	73	77	12.0000
rrrr	chr2:70454801-70455083(-)$1	282	80	84	12.0000
:::e	chr1:22828678-22828927(+)$1	249	24	28	12.0000
EEEE	chr6:43501725-43501978(-)$1	253	6	10	12.0000
$bb#	chrX:153627864-153628092(+)$1	228	82	86	12.0000
::HH	chr2:128084191-128084504(-)$1	313	3	7	12.0000
4444	chr17:7080337-7080575(-)$1	238	151	155	12.0000
hhho	chr20:33027836-33028134(+)$1	298	62	66	12.0000
:::f	chr12:10862561-10862825(-)$1	264	53	57	12.0000
OBB{	chr2:208598552-208598809(+)$1	257	93	97	12.0000
IIII	chr5:65451769-65452041(+)$1	272	51	55	12.0000
>>gg	chr14:24034439-24034699(-)$1	260	223	227	12.0000
DDDD	chr2:234178535-234178781(+)$1	246	38	42	12.0000
KCCC	chr3:9431922-9432168(-)$1	246	10	14	12.0000
{DDD	chr1:226053557-226053780(-)$1	223	2	6	12.0000
::::	chr16:52551265-52551525(-)$1	260	10	14	12.0000
::::	chr7:155573324-155573569(+)$1	245	239	243	12.0000
gggg	chr10:7749055-7749260(+)$1	205	21	25	12.0000
:::f	chr11:65202028-65202242(+)$1	214	0	4	12.0000
iiii	chr7:155573703-155573976(+)$1	273	203	207	12.0000
nnnc	chr14:24035485-24035731(-)$1	246	63	67	12.0000
GGGG	chr3:52838618-52838836(+)$1	218	81	85	12.0000
ggg#	chr14:35482901-35483162(+)$1	261	67	71	12.0000
""a"	chr5:134126048-134126275(+)$1	227	37	41	12.0000
HHH{	chr11:47493559-47493831(-)$1	272	84	88	12.0000
SSSS	chr14:36169392-36169642(-)$1	250	42	46	12.0000
::dd	chr15:63829364-63829617(+)$1	253	4	8	12.0000
"eee	chr3:9516639-9516888(+)$1	249	56	60	12.0000
EWWW	chr16:88728422-88728686(-)$1	264	84	88	12.0000
EEE}	chr5:38886195-38886522(+)$1	327	243	247	12.0000
HHHH	chr3:197581145-197581408(+)$1	263	82	86	12.0000
III:	chrX:108887324-108887598(-)$1	274	94	98	12.0000
fDDD	chr12:121766159-121766421(-)$1	262	52	56	12.0000
nndd	chr14:45565695-45565978(+)$1	283	14	18	12.0000
[eee	chr10:121339382-121339656(-)$1	274	122	126	12.0000
gggg	chr2:201778023-201778253(-)$1	230	35	39	12.0000
::::	chr20:47626654-47626926(+)$1	272	35	39	12.0000
::::	chr11:67946953-67947225(-)$1	272	1	5	12.0000
22ee	chr12:69663188-69663426(+)$1	238	47	51	12.0000
DDZZ	chr2:27425698-27425938(-)$1	240	158	162	12.0000
vvvv	chr2:209176826-209177106(+)$1	280	51	55	12.0000
5555	chr10:70515952-70516202(+)$1	250	60	64	12.0000
cbbd	chr2:179462319-179462608(+)$1	289	34	38	12.0000
ffff	chr20:33437692-33437982(-)$1	290	19	23	12.0000
dddu	chr2:191761188-191761462(+)$1	274	46	50	12.0000
>>>>	chr6:17785423-17785692(-)$1	269	128	132	12.0000
ffff	chr20:33334568-33334838(-)$1	270	10	14	12.0000
++++	chr10:79579058-79579328(-)$1	270	83	87	12.0000
DDD{	chr12:72004729-72004985(-)$1	256	17	21	12.0000
gggg	chr20:62572416-62572633(-)$1	217	40	44	12.0000
>>>>	chr11:10879326-10879588(-)$1	262	81	85	12.0000
F{A:	chr11:2943219-2943510(+)$1	291	87	91	12.0000
%%%%	chrX:23802321-23802545(+)$1	224	10	14	12.0000
GGGG	chr6:31500587-31500813(-)$1	226	7	11	12.0000
::::	chr17:73236351-73236603(-)$1	252	80	84	12.0000
eecc	chr22:42294786-42295040(+)$1	254	29	33	12.0000
::::	chr10:70515903-70516152(+)$1	249	3	7	12.0000
::::	chr20:30136327-30136571(+)$1	244	7	11	12.0000
qqqq	chr16:8728779-8729046(+)$1	267	61	65	12.0000
ooof	chr11:65191017-65191224(+)$1	207	103	107	12.0000
::::	chr2:209169464-209169754(+)$1	290	20	24	12.0000
QQQQ	chr14:24031290-24031517(-)$1	227	82	86	12.0000
oooo	chr20:17599225-17599442(-)$1	217	66	70	12.0000
"eee	chr14:24614851-24615110(-)$1	259	93	97	12.0000
::::	chr14:39618641-39618894(-)$1	253	52	56	12.0000
^^^^	chr6:36507843-36508092(-)$1	249	65	69	12.0000
IIII	chr17:56076659-56076981(-)$1	322	63	67	12.0000
::::	chr7:138209883-138210130(+)$1	247	3	7	12.0000
I::b	chr1:19437012-19437281(-)$1	269	104	108	12.0000
::::	chr8:30567271-30567526(-)$1	255	242	246	12.0000
ddde	chr14:24910836-24911115(-)$1	279	103	107	12.0000
GGGG	chrX:151127032-151127292(-)$1	260	3	7	12.0000
::::	chr11:63714300-63714560(+)$1	260	106	110	12.0000
FF::	chr8:19708995-19709292(+)$1	297	30	34	12.0000
ggg3	chr6:168348409-168348716(+)$1	307	241	245	12.0000
^^^^	chr6:4064484-4064745(+)$1	261	77	81	12.0000

#DB
....	chr11:70255824-70256090(+)$1	1	34	38	12.0000
....	chr17:7571951-7572249(-)$1	1	67	71	12.0000
....	chr9:95012611-95012884(-)$1	1	213	217	12.0000
....	chr8:134269162-134269420(-)$1	1	86	90	12.0000
)..)	chr4:184192116-184192372(+)$1	1	71	75	12.0000
((..	chr6:35446935-35447213(-)$1	1	105	109	12.0000
).))	chr6:109591137-109591390(+)$1	1	56	60	12.0000
.)))	chr6:144908692-144908955(+)$1	1	247	251	12.0000
))))	chr16:546960-547248(+)$1	1	236	240	12.0000
....	chr17:30696796-30697037(+)$1	1	23	27	12.0000
....	chr11:65203905-65204143(+)$1	1	73	77	12.0000
....	chr2:70454801-70455083(-)$1	1	80	84	12.0000
...(	chr1:22828678-22828927(+)$1	1	24	28	12.0000
((((	chr6:43501725-43501978(-)$1	1	6	10	12.0000
.((.	chrX:153627864-153628092(+)$1	1	82	86	12.0000
..((	chr2:128084191-128084504(-)$1	1	3	7	12.0000
....	chr17:7080337-7080575(-)$1	1	151	155	12.0000
(((.	chr20:33027836-33028134(+)$1	1	62	66	12.0000
...(	chr12:10862561-10862825(-)$1	1	53	57	12.0000
.((.	chr2:208598552-208598809(+)$1	1	93	97	12.0000
((((	chr5:65451769-65452041(+)$1	1	51	55	12.0000
..))	chr14:24034439-24034699(-)$1	1	223	227	12.0000
((((	chr2:234178535-234178781(+)$1	1	38	42	12.0000
.(((	chr3:9431922-9432168(-)$1	1	10	14	12.0000
.(((	chr1:226053557-226053780(-)$1	1	2	6	12.0000
....	chr16:52551265-52551525(-)$1	1	10	14	12.0000
....	chr7:155573324-155573569(+)$1	1	239	243	12.0000
))))	chr10:7749055-7749260(+)$1	1	21	25	12.0000
...(	chr11:65202028-65202242(+)$1	1	0	4	12.0000
))))	chr7:155573703-155573976(+)$1	1	203	207	12.0000
...)	chr14:24035485-24035731(-)$1	1	63	67	12.0000
((((	chr3:52838618-52838836(+)$1	1	81	85	12.0000
(((.	chr14:35482901-35483162(+)$1	1	67	71	12.0000
..(.	chr5:134126048-134126275(+)$1	1	37	41	12.0000
(((.	chr11:47493559-47493831(-)$1	1	84	88	12.0000
....	chr14:36169392-36169642(-)$1	1	42	46	12.0000
..((	chr15:63829364-63829617(+)$1	1	4	8	12.0000
.(((	chr3:9516639-9516888(+)$1	1	56	60	12.0000
(...	chr16:88728422-88728686(-)$1	1	84	88	12.0000
))).	chr5:38886195-38886522(+)$1	1	243	247	12.0000
((((	chr3:197581145-197581408(+)$1	1	82	86	12.0000
(((.	chrX:108887324-108887598(-)$1	1	94	98	12.0000
)(((	chr12:121766159-121766421(-)$1	1	52	56	12.0000
..))	chr14:45565695-45565978(+)$1	1	14	18	12.0000
.(((	chr10:121339382-121339656(-)$1	1	122	126	12.0000
))))	chr2:201778023-201778253(-)$1	1	35	39	12.0000
....	chr20:47626654-47626926(+)$1	1	35	39	12.0000
....	chr11:67946953-67947225(-)$1	1	1	5	12.0000
..))	chr12:69663188-69663426(+)$1	1	47	51	12.0000
))..	chr2:27425698-27425938(-)$1	1	158	162	12.0000
....	chr2:209176826-209177106(+)$1	1	51	55	12.0000
....	chr10:70515952-70516202(+)$1	1	60	64	12.0000
((((	chr2:179462319-179462608(+)$1	1	34	38	12.0000
((((	chr20:33437692-33437982(-)$1	1	19	23	12.0000
(((.	chr2:191761188-191761462(+)$1	1	46	50	12.0000
....	chr6:17785423-17785692(-)$1	1	128	132	12.0000
((((	chr20:33334568-33334838(-)$1	1	10	14	12.0000
....	chr10:79579058-79579328(-)$1	1	83	87	12.0000
(((.	chr12:72004729-72004985(-)$1	1	17	21	12.0000
))))	chr20:62572416-62572633(-)$1	1	40	44	12.0000
....	chr11:10879326-10879588(-)$1	1	81	85	12.0000
(.(.	chr11:2943219-2943510(+)$1	1	87	91	12.0000
....	chrX:23802321-23802545(+)$1	1	10	14	12.0000
((((	chr6:31500587-31500813(-)$1	1	7	11	12.0000
....	chr17:73236351-73236603(-)$1	1	80	84	12.0000
((((	chr22:42294786-42295040(+)$1	1	29	33	12.0000
....	chr10:70515903-70516152(+)$1	1	3	7	12.0000
....	chr20:30136327-30136571(+)$1	1	7	11	12.0000
....	chr16:8728779-8729046(+)$1	1	61	65	12.0000
...)	chr11:65191017-65191224(+)$1	1	103	107	12.0000
....	chr2:209169464-209169754(+)$1	1	20	24	12.0000
....	chr14:24031290-24031517(-)$1	1	82	86	12.0000
....	chr20:17599225-17599442(-)$1	1	66	70	12.0000
.(((	chr14:24614851-24615110(-)$1	1	93	97	12.0000
....	chr14:39618641-39618894(-)$1	1	52	56	12.0000
....	chr6:36507843-36508092(-)$1	1	65	69	12.0000
((((	chr17:56076659-56076981(-)$1	1	63	67	12.0000
....	chr7:138209883-138210130(+)$1	1	3	7	12.0000
(..(	chr1:19437012-19437281(-)$1	1	104	108	12.0000
....	chr8:30567271-30567526(-)$1	1	242	246	12.0000
))))	chr14:24910836-24911115(-)$1	1	103	107	12.0000
((((	chrX:151127032-151127292(-)$1	1	3	7	12.0000
....	chr11:63714300-63714560(+)$1	1	106	110	12.0000
((..	chr8:19708995-19709292(+)$1	1	30	34	12.0000
))).	chr6:168348409-168348716(+)$1	1	241	245	12.0000
....	chr6:4064484-4064745(+)$1	1	77	81	12.0000

#PSSM
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
C : 0.93	c : 0.06	
U : 0.93	u : 0.06	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_transcript_m2_run1.nuc.txt

#NT
cccuuccuuuuccccuucccuuccuuuuucccuucccuucccauucccuuccccuucccucccccuucccuuccccuucccuuccccuuccauuccccuuccccuucccuuuccccuucccuuccuuucccuuucccuuccccuucccuuccccuuggcuuuccccuucucuucccuucccuuccccuuucucuuccccuuccccuuccuuuuccccuuccccuuucccuuccUUCCUUAuuuucuuucuuuugacagggucucacucugccccccaggcuggagugcaguagugcuaucugcucacugcagcuuugacuucccaggcucaagcgauccucccaccu	chr10:99010720-99011085(-)$1	365	17	364	556.0000

#otherMatches

#Struct PSSM
:iiiiiiiii[dddd####dddd[dddd"""ccc''''''''ffffff[ffffff%%%%%%bb####bb####ffffff[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]ffffff333bb4444bbffffffffffff4444ccc22dddddddd4444dddd666666iiiiiiiii::::::::::::ccc!!bbnnnnnbb333cc	chr16:87733951-87734304(-)$1	353	5	352	556.0000
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ADDDDDDDD::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::bbqqqqqqqqbbfffffflllffffff::::a[ffffff[dddd[eeeeeooooooeeeeedddd]ffffff]a:::::::DDDD}DDDD}A::::::::::::	chr10:99010720-99011085(-)$1	365	17	364	556.0000

#DB
.(((((((((.((((....((((.((((...(((........((((((.((((((......((....((....((((((.((((..............................................................................................................................................................)))).))))))...))....))))))))))))))....)))..))))))))....))))......)))))))))............(((..((.....))...))	chr16:87733951-87734304(-)$1	1	5	352	556.0000
........................................................................................................................................................(((((((((..................................................................................((........))((((((...))))))....(.((((((.((((.(((((......))))))))).)))))).).......)))).)))).)............	chr10:99010720-99011085(-)$1	1	17	364	556.0000

#PSSM
u : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
g : 0.50	u : 0.50	
c : 0.50	u : 0.50	
c : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
a : 0.50	u : 0.50	
a : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
u : 0.50	c : 0.50	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
c : 1.00	
g : 0.50	u : 0.50	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
u : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
c : 1.00	
u : 0.50	c : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
u : 0.50	a : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
c : 1.00	
a : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 0.50	u : 0.50	
g : 0.50	u : 0.50	
u : 0.50	c : 0.50	
u : 0.50	c : 0.50	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
u : 0.50	c : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
a : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
u : 0.50	c : 0.50	
u : 0.50	c : 0.50	
u : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
u : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 1.00	
u : 0.50	c : 0.50	
u : 0.50	c : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
u : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
c : 1.00	
u : 0.50	c : 0.50	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
a : 0.50	u : 0.50	
c : 1.00	
c : 1.00	
c : 1.00	
u : 0.50	c : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
u : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 0.50	c : 0.50	
a : 0.50	u : 0.50	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
c : 1.00	
u : 0.50	c : 0.50	
c : 1.00	
u : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
c : 1.00	
u : 0.50	c : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
u : 0.50	c : 0.50	
c : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
u : 0.50	g : 0.50	
c : 0.50	g : 0.50	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
c : 1.00	
u : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
a : 0.50	u : 0.50	
c : 0.50	u : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
u : 0.50	c : 0.50	
u : 0.50	c : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
u : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
a : 0.50	u : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 1.00	
u : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
c : 1.00	
u : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
a : 0.50	u : 0.50	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
c : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
c : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	u : 0.50	
U : 0.50	u : 0.50	
G : 0.50	u : 0.50	
G : 0.50	u : 0.50	
A : 0.50	c : 0.50	
A : 0.50	u : 0.50	
U : 0.50	u : 0.50	
C : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	u : 0.50	
G : 0.50	u : 0.50	
U : 0.50	u : 0.50	
C : 0.50	g : 0.50	
U : 0.50	a : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	u : 0.50	
U : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	c : 0.50	
G : 0.50	c : 0.50	
A : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	u : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
U : 0.50	g : 0.50	
A : 0.50	c : 0.50	
A : 0.50	u : 0.50	
A : 0.50	a : 0.50	
G : 0.50	u : 0.50	
G : 0.50	c : 0.50	
U : 0.50	u : 0.50	
A : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
C : 0.50	a : 0.50	
A : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	u : 0.50	
G : 0.50	u : 0.50	
G : 0.50	u : 0.50	
C : 0.50	g : 0.50	
A : 0.50	a : 0.50	
U : 0.50	c : 0.50	
C : 0.50	u : 0.50	
A : 0.50	u : 0.50	
U : 0.50	c : 0.50	
G : 0.50	c : 0.50	
A : 0.50	c : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	u : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
A : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
U : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
G : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
G : 0.50	u : 0.50	

#score	1112.0
#seq	2
#width	347
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_transcript_m1_run1.nuc.txt

#NT
GGGU	chr2:85772114-85772332(+)$1	218	36	40	12.0000
GGGU	chr16:1496028-1496255(-)$1	227	152	156	12.0000
GGGU	chr19:2271188-2271434(+)$1	246	48	52	12.0000
gggu	chr18:2765487-2765777(+)$1	290	142	146	12.0000
GGGU	chr19:2232080-2232359(+)$1	279	82	86	12.0000
GGGU	chr16:595605-595854(+)$1	249	37	41	12.0000
GGGU	chr17:56408573-56408876(-)$1	303	94	98	12.0000
GGGU	chr10:103342184-103342480(-)$1	296	14	18	12.0000
GGGU	chr1:2225027-2225301(+)$1	274	148	152	12.0000
gggu	chr6:89021484-89021768(-)$1	284	25	29	12.0000
GGGU	chr16:85649012-85649268(+)$1	256	8	12	12.0000
GGGU	chr4:83816905-83817165(-)$1	260	251	255	12.0000
GGGU	chrX:70362104-70362359(+)$1	255	127	131	12.0000
gggu	chr7:71877044-71877301(-)$1	257	56	60	12.0000
GGGU	chr19:1410922-1411137(+)$1	215	64	68	12.0000
GGGU	chr1:1431246-1431590(+)$1	344	35	39	12.0000
GGGU	chr12:133134119-133134364(+)$1	245	67	71	12.0000
gggu	chr6:16266091-16266294(+)$1	203	3	7	12.0000
gggu	chr6:157297718-157298018(+)$1	300	49	53	12.0000
GGGU	chr6:4777167-4777410(+)$1	243	63	67	12.0000
GGGU	chr3:48227208-48227476(-)$1	268	193	197	12.0000
GGGU	chr19:1415883-1416127(+)$1	244	8	12	12.0000
GGGU	chr1:109642748-109642953(+)$1	205	89	93	12.0000
GGGU	chr2:131879766-131880062(+)$1	296	205	209	12.0000
GGGU	chr16:583980-584231(+)$1	251	52	56	12.0000
gggu	chr2:12563750-12564035(+)$1	285	160	164	12.0000
GGGU	chr3:9519600-9519878(+)$1	278	49	53	12.0000
GGGU	chr22:45737281-45737635(+)$1	354	62	66	12.0000
GGGU	chr18:2692994-2693280(+)$1	286	58	62	12.0000
GGGU	chr19:579293-579526(+)$1	233	140	144	12.0000
gggu	chr21:46493856-46494174(+)$1	318	37	41	12.0000
GGGU	chr7:101460979-101461238(+)$1	259	33	37	12.0000
GGGU	chr19:49606814-49607059(+)$1	245	94	98	12.0000
GGGU	chr9:139559507-139559799(+)$1	292	103	107	12.0000
GGGU	chr3:6717501-6717760(+)$1	259	19	23	12.0000
GGGU	chr19:10406383-10406643(+)$1	260	51	55	12.0000
GGGU	chr1:1154824-1155061(-)$1	237	4	8	12.0000
gggu	chr16:85675886-85676121(+)$1	235	5	9	12.0000
gggu	chr12:11121263-11121614(-)$1	351	180	184	12.0000
GGGU	chr16:89042112-89042348(-)$1	236	114	118	12.0000
GGGU	chr16:85646593-85646830(+)$1	237	11	15	12.0000
GGGU	chr6:26123545-26123783(-)$1	238	142	146	12.0000
GGGU	chr2:219140918-219141179(-)$1	261	71	75	12.0000
gggu	chr3:44689421-44689700(+)$1	279	67	71	12.0000
GGGU	chr14:102515941-102516215(+)$1	274	2	6	12.0000
GGGU	chr1:109642866-109643075(+)$1	209	23	27	12.0000
GGGU	chr7:100171653-100171895(-)$1	242	21	25	12.0000
GGGU	chr16:85647389-85647654(+)$1	265	20	24	12.0000
GGGU	chr6:26123583-26123833(-)$1	250	192	196	12.0000
GGGU	chr3:187461946-187462202(-)$1	256	82	86	12.0000
GGGU	chr19:10406443-10406710(+)$1	267	18	22	12.0000
gggu	chr2:71565691-71565944(+)$1	253	126	130	12.0000
GGGU	chr4:1239088-1239321(-)$1	233	166	170	12.0000
GGGU	chr7:100171055-100171334(-)$1	279	216	220	12.0000
GGGU	chr17:62501969-62502234(-)$1	265	2	6	12.0000
GGGU	chr11:69187003-69187276(+)$1	273	103	107	12.0000
GGGU	chr11:294550-294809(+)$1	259	137	141	12.0000
GGGU	chr1:113177388-113177607(+)$1	219	105	109	12.0000
GGGU	chrX:39950224-39950482(-)$1	258	125	129	12.0000
GGGU	chrX:48830079-48830383(-)$1	304	146	150	12.0000
GGGU	chr16:590558-590809(+)$1	251	107	111	12.0000
GGGU	chr16:85685144-85685387(+)$1	243	109	113	12.0000
GGGU	chr22:50015630-50015868(-)$1	238	100	104	12.0000
GGGU	chr3:128211110-128211357(+)$1	247	205	209	12.0000
GGGU	chr22:50016606-50016877(-)$1	271	108	112	12.0000
GGGU	chr14:35330518-35330789(-)$1	271	178	182	12.0000
gggu	chr14:61306100-61306424(+)$1	324	199	203	12.0000
gggu	chr1:169913551-169913856(-)$1	305	28	32	12.0000
gggu	chr5:53674378-53674654(+)$1	276	266	270	12.0000
GGGU	chr16:1427213-1427446(-)$1	233	91	95	12.0000
GGGU	chr4:78078360-78078621(+)$1	261	48	52	12.0000
gggu	chr19:57914771-57915119(+)$1	348	162	166	12.0000
gggu	chr6:16266437-16266646(+)$1	209	126	130	12.0000
GGGU	chr2:97534700-97534984(-)$1	284	41	45	12.0000
GGGU	chr16:85681120-85681354(+)$1	234	63	67	12.0000
GGGU	chrX:3756255-3756496(-)$1	241	162	166	12.0000

#otherMatches

#Struct PSSM
bb[d	chr1:113177363-113177588(+)$1	225	130	134	12.0000
ggii	chr2:85772114-85772332(+)$1	218	36	40	12.0000
fff:	chr16:1496028-1496255(-)$1	227	152	156	12.0000
GGGG	chr19:2271188-2271434(+)$1	246	48	52	12.0000
dd[e	chr18:2765487-2765777(+)$1	290	142	146	12.0000
LA{I	chr19:2232080-2232359(+)$1	279	82	86	12.0000
DDDD	chr16:595605-595854(+)$1	249	37	41	12.0000
eeee	chr17:56408573-56408876(-)$1	303	94	98	12.0000
eepp	chr10:103342184-103342480(-)$1	296	14	18	12.0000
DDD:	chr1:2225027-2225301(+)$1	274	148	152	12.0000
qddd	chr6:89021484-89021768(-)$1	284	25	29	12.0000
eecc	chr16:85649012-85649268(+)$1	256	8	12	12.0000
:EEE	chr4:83816905-83817165(-)$1	260	251	255	12.0000
dddd	chrX:70362104-70362359(+)$1	255	127	131	12.0000
{CCC	chr7:71877044-71877301(-)$1	257	56	60	12.0000
iiii	chr19:1410922-1411137(+)$1	215	64	68	12.0000
hhhh	chr1:1431246-1431590(+)$1	344	35	39	12.0000
HHHH	chr12:133134119-133134364(+)$1	245	67	71	12.0000
dddd	chr6:16266091-16266294(+)$1	203	3	7	12.0000
dddd	chr6:157297718-157298018(+)$1	300	49	53	12.0000
bb[a	chr6:4777167-4777410(+)$1	243	63	67	12.0000
ddcc	chr3:48227208-48227476(-)$1	268	193	197	12.0000
HH{C	chr19:1415883-1416127(+)$1	244	8	12	12.0000
333e	chr1:109642748-109642953(+)$1	205	89	93	12.0000
fffl	chr2:131879766-131880062(+)$1	296	205	209	12.0000
dd[e	chr16:583980-584231(+)$1	251	52	56	12.0000
eeee	chr2:12563750-12564035(+)$1	285	160	164	12.0000
iiii	chr3:9519600-9519878(+)$1	278	49	53	12.0000
ccce	chr22:45737281-45737635(+)$1	354	62	66	12.0000
gggg	chr18:2692994-2693280(+)$1	286	58	62	12.0000
eeee	chr19:579293-579526(+)$1	233	140	144	12.0000
ccc2	chr21:46493856-46494174(+)$1	318	37	41	12.0000
nnnn	chr7:101460979-101461238(+)$1	259	33	37	12.0000
EDDD	chr19:49606814-49607059(+)$1	245	94	98	12.0000
ffff	chr9:139559507-139559799(+)$1	292	103	107	12.0000
cccc	chr3:6717501-6717760(+)$1	259	19	23	12.0000
ggoo	chr19:10406383-10406643(+)$1	260	51	55	12.0000
HHHH	chr1:1154824-1155061(-)$1	237	4	8	12.0000
:III	chr16:85675886-85676121(+)$1	235	5	9	12.0000
ffff	chr12:11121263-11121614(-)$1	351	180	184	12.0000
gggg	chr16:89042112-89042348(-)$1	236	114	118	12.0000
DDDK	chr16:85646593-85646830(+)$1	237	11	15	12.0000
EEEE	chr6:26123545-26123783(-)$1	238	142	146	12.0000
BBFF	chr2:219140918-219141179(-)$1	261	71	75	12.0000
eeee	chr3:44689421-44689700(+)$1	279	67	71	12.0000
GGGG	chr14:102515941-102516215(+)$1	274	2	6	12.0000
DDDD	chr1:109642866-109643075(+)$1	209	23	27	12.0000
pppp	chr7:100171653-100171895(-)$1	242	21	25	12.0000
gggg	chr16:85647389-85647654(+)$1	265	20	24	12.0000
EEEE	chr6:26123583-26123833(-)$1	250	192	196	12.0000
====	chr3:187461946-187462202(-)$1	256	82	86	12.0000
[ccc	chr19:10406443-10406710(+)$1	267	18	22	12.0000
leee	chr2:71565691-71565944(+)$1	253	126	130	12.0000
hmmm	chr4:1239088-1239321(-)$1	233	166	170	12.0000
4hhh	chr7:100171055-100171334(-)$1	279	216	220	12.0000
:fff	chr17:62501969-62502234(-)$1	265	2	6	12.0000
ffff	chr11:69187003-69187276(+)$1	273	103	107	12.0000
ffbb	chr11:294550-294809(+)$1	259	137	141	12.0000
bb[d	chr1:113177388-113177607(+)$1	219	105	109	12.0000
22bb	chrX:39950224-39950482(-)$1	258	125	129	12.0000
HHHH	chrX:48830079-48830383(-)$1	304	146	150	12.0000
EEEE	chr16:590558-590809(+)$1	251	107	111	12.0000
lccc	chr16:85685144-85685387(+)$1	243	109	113	12.0000
====	chr22:50015630-50015868(-)$1	238	100	104	12.0000
HHHH	chr3:128211110-128211357(+)$1	247	205	209	12.0000
ddd]	chr22:50016606-50016877(-)$1	271	108	112	12.0000
ggg:	chr14:35330518-35330789(-)$1	271	178	182	12.0000
dddd	chr14:61306100-61306424(+)$1	324	199	203	12.0000
GGGG	chr1:169913551-169913856(-)$1	305	28	32	12.0000
eeee	chr5:53674378-53674654(+)$1	276	266	270	12.0000
C{DD	chr16:1427213-1427446(-)$1	233	91	95	12.0000
JJJJ	chr4:78078360-78078621(+)$1	261	48	52	12.0000
[ddd	chr19:57914771-57915119(+)$1	348	162	166	12.0000
aggg	chr6:16266437-16266646(+)$1	209	126	130	12.0000
%%%g	chr2:97534700-97534984(-)$1	284	41	45	12.0000
bccc	chr16:85681120-85681354(+)$1	234	63	67	12.0000
dppp	chrX:3756255-3756496(-)$1	241	162	166	12.0000

#DB
((.(	chr1:113177363-113177588(+)$1	1	130	134	12.0000
))((	chr2:85772114-85772332(+)$1	1	36	40	12.0000
))).	chr16:1496028-1496255(-)$1	1	152	156	12.0000
((((	chr19:2271188-2271434(+)$1	1	48	52	12.0000
((.(	chr18:2765487-2765777(+)$1	1	142	146	12.0000
.(.(	chr19:2232080-2232359(+)$1	1	82	86	12.0000
((((	chr16:595605-595854(+)$1	1	37	41	12.0000
))))	chr17:56408573-56408876(-)$1	1	94	98	12.0000
((..	chr10:103342184-103342480(-)$1	1	14	18	12.0000
))).	chr1:2225027-2225301(+)$1	1	148	152	12.0000
.)))	chr6:89021484-89021768(-)$1	1	25	29	12.0000
((((	chr16:85649012-85649268(+)$1	1	8	12	12.0000
.)))	chr4:83816905-83817165(-)$1	1	251	255	12.0000
))))	chrX:70362104-70362359(+)$1	1	127	131	12.0000
.(((	chr7:71877044-71877301(-)$1	1	56	60	12.0000
))))	chr19:1410922-1411137(+)$1	1	64	68	12.0000
))))	chr1:1431246-1431590(+)$1	1	35	39	12.0000
((((	chr12:133134119-133134364(+)$1	1	67	71	12.0000
((((	chr6:16266091-16266294(+)$1	1	3	7	12.0000
))))	chr6:157297718-157298018(+)$1	1	49	53	12.0000
((.(	chr6:4777167-4777410(+)$1	1	63	67	12.0000
))))	chr3:48227208-48227476(-)$1	1	193	197	12.0000
((.(	chr19:1415883-1416127(+)$1	1	8	12	12.0000
...)	chr1:109642748-109642953(+)$1	1	89	93	12.0000
(((.	chr2:131879766-131880062(+)$1	1	205	209	12.0000
((.(	chr16:583980-584231(+)$1	1	52	56	12.0000
((((	chr2:12563750-12564035(+)$1	1	160	164	12.0000
))))	chr3:9519600-9519878(+)$1	1	49	53	12.0000
((((	chr22:45737281-45737635(+)$1	1	62	66	12.0000
((((	chr18:2692994-2693280(+)$1	1	58	62	12.0000
((((	chr19:579293-579526(+)$1	1	140	144	12.0000
))).	chr21:46493856-46494174(+)$1	1	37	41	12.0000
....	chr7:101460979-101461238(+)$1	1	33	37	12.0000
((((	chr19:49606814-49607059(+)$1	1	94	98	12.0000
))))	chr9:139559507-139559799(+)$1	1	103	107	12.0000
))))	chr3:6717501-6717760(+)$1	1	19	23	12.0000
((..	chr19:10406383-10406643(+)$1	1	51	55	12.0000
((((	chr1:1154824-1155061(-)$1	1	4	8	12.0000
.(((	chr16:85675886-85676121(+)$1	1	5	9	12.0000
((((	chr12:11121263-11121614(-)$1	1	180	184	12.0000
((((	chr16:89042112-89042348(-)$1	1	114	118	12.0000
(((.	chr16:85646593-85646830(+)$1	1	11	15	12.0000
))))	chr6:26123545-26123783(-)$1	1	142	146	12.0000
((((	chr2:219140918-219141179(-)$1	1	71	75	12.0000
((((	chr3:44689421-44689700(+)$1	1	67	71	12.0000
((((	chr14:102515941-102516215(+)$1	1	2	6	12.0000
((((	chr1:109642866-109643075(+)$1	1	23	27	12.0000
....	chr7:100171653-100171895(-)$1	1	21	25	12.0000
((((	chr16:85647389-85647654(+)$1	1	20	24	12.0000
))))	chr6:26123583-26123833(-)$1	1	192	196	12.0000
))))	chr3:187461946-187462202(-)$1	1	82	86	12.0000
.(((	chr19:10406443-10406710(+)$1	1	18	22	12.0000
.)))	chr2:71565691-71565944(+)$1	1	126	130	12.0000
(...	chr4:1239088-1239321(-)$1	1	166	170	12.0000
.)))	chr7:100171055-100171334(-)$1	1	216	220	12.0000
.(((	chr17:62501969-62502234(-)$1	1	2	6	12.0000
((((	chr11:69187003-69187276(+)$1	1	103	107	12.0000
))))	chr11:294550-294809(+)$1	1	137	141	12.0000
((.(	chr1:113177388-113177607(+)$1	1	105	109	12.0000
..))	chrX:39950224-39950482(-)$1	1	125	129	12.0000
((((	chrX:48830079-48830383(-)$1	1	146	150	12.0000
((((	chr16:590558-590809(+)$1	1	107	111	12.0000
.)))	chr16:85685144-85685387(+)$1	1	109	113	12.0000
((((	chr22:50015630-50015868(-)$1	1	100	104	12.0000
))))	chr3:128211110-128211357(+)$1	1	205	209	12.0000
))).	chr22:50016606-50016877(-)$1	1	108	112	12.0000
))).	chr14:35330518-35330789(-)$1	1	178	182	12.0000
))))	chr14:61306100-61306424(+)$1	1	199	203	12.0000
((((	chr1:169913551-169913856(-)$1	1	28	32	12.0000
))))	chr5:53674378-53674654(+)$1	1	266	270	12.0000
(.((	chr16:1427213-1427446(-)$1	1	91	95	12.0000
((((	chr4:78078360-78078621(+)$1	1	48	52	12.0000
.(((	chr19:57914771-57915119(+)$1	1	162	166	12.0000
))))	chr6:16266437-16266646(+)$1	1	126	130	12.0000
...(	chr2:97534700-97534984(-)$1	1	41	45	12.0000
))))	chr16:85681120-85681354(+)$1	1	63	67	12.0000
(...	chrX:3756255-3756496(-)$1	1	162	166	12.0000

#PSSM
G : 0.79	g : 0.20	
G : 0.79	g : 0.20	
G : 0.79	g : 0.20	
U : 0.79	u : 0.20	

#score	924.0000000000001
#seq	77
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_CDS_m1_run1.nuc.txt

#NT
GGCGCGGGGGCCGGGGGUC	chr19:1468580-1468829(-)$1	249	90	109	20.1818
ggagccgggcccggggcgg	chr8:145687775-145688071(-)$1	296	118	137	28.8181
GUGGGCGGGCCCCGUGCGG	chr19:538656-538923(+)$1	267	134	153	21.0909
ggggcugggugcggggcgg	chr17:41622773-41623039(+)$1	266	103	122	29.0454
AGGGCUGGGGGGCGGGCGA	chr8:103424361-103424610(-)$1	249	82	101	23.1363
ggggcuggggccagggccu	chr19:1585110-1585430(-)$1	320	49	68	24.0454
cgggccggggcggcggcgc	chr14:23790595-23790854(+)$1	259	139	158	24.5000
ACGGUGGGGGGAGGGGCGG	chr16:2029100-2029389(+)$1	289	91	110	23.8181
AUGCGCggggcgggggcgg	chr11:65325159-65325437(-)$1	278	49	68	23.1363
cgggccggggccgggggcg	chr8:30669833-30670093(-)$1	260	73	92	26.7727
AGGGCGGGGAGCGGGGCGG	chr1:36788412-36788683(+)$1	271	55	74	28.5909
AGGGUGGGGGCCUGGGUGG	chr3:49755246-49755516(+)$1	270	102	121	23.5909
CUGGCUgggcgcgggccgg	chr11:637269-637528(+)$1	259	71	90	21.5454
GGGGUGGGGGCUGUGGCCG	chr1:27320165-27320415(+)$1	250	17	36	21.3181
ACGGCCGAGGGCCGGGCGG	chr16:4664336-4664608(-)$1	272	214	233	23.5909
ggcgcggggcccggggcgg	chr2:231902423-231902682(+)$1	259	73	92	28.1363
UGGGCGGGGGCGGGGACGG	chr1:234614071-234614338(-)$1	267	3	22	26.5454
ggguccgcggcccgggcgu	chr16:89788070-89788313(+)$1	243	185	204	21.0909
GCGGGCGGGGUCGCGGAGG	chr20:32255459-32255706(-)$1	247	103	122	20.1818
GUGGGCGGGGGCGGGACGA	chr5:138629655-138629972(+)$1	317	176	195	22.2272
UGGGCCGGGGCCGGGGCGG	chr19:1467299-1467542(-)$1	243	91	110	33.5909

#otherMatches

#Struct PSSM
HHHHHH:ffffff!!bbnn	chr2:20423850-20424122(-)$1	272	55	74	22.2272
oohhhhhhhh333bb]iii	chr19:1468580-1468829(-)$1	249	90	109	20.1818
gggggg]aiiiiiiiii[g	chr8:145687775-145688071(-)$1	296	118	137	28.8181
::ffffff"""bb[bb[gg	chr19:538656-538923(+)$1	267	134	153	21.0909
CCJJJJJJJJJJ{DDDD{B	chr17:41622773-41623039(+)$1	266	103	122	29.0454
e::CCC{BB{FFFFFF{CC	chr8:103424361-103424610(-)$1	249	82	101	23.1363
LLEEEEE{CCC:cccnnnn	chr19:1585110-1585430(-)$1	320	49	68	24.0454
JJJJJJJ:ddddmmmmddd	chr14:23790595-23790854(+)$1	259	139	158	24.5000
::ggggggg"""eeeee$$	chr16:2029100-2029389(+)$1	289	91	110	23.8181
CC::ddddeeeee[hhhhh	chr11:65325159-65325437(-)$1	278	49	68	23.1363
c22ccc333dddd22a]ee	chr8:30669833-30670093(-)$1	260	73	92	26.7727
MBBKKGGGGGGG:::dddd	chr1:36788412-36788683(+)$1	271	55	74	28.5909
MBB:JJJJJJJJJJ::fff	chr3:49755246-49755516(+)$1	270	102	121	23.5909
aggggggg[allla]gggg	chr11:637269-637528(+)$1	259	71	90	21.5454
JJJJJJJJJJMMMMBB:bb	chr1:27320165-27320415(+)$1	250	17	36	21.3181
nccca]ddddGGGGGGG}C	chr16:4664336-4664608(-)$1	272	214	233	23.5909
$$eeeee!!ddddiiiiii	chr2:231902423-231902682(+)$1	259	73	92	28.1363
GGGGGKKDDDDLLLEEEEE	chr1:234614071-234614338(-)$1	267	3	22	26.5454
BBa[iiiiiiiii[cccpp	chr16:89788070-89788313(+)$1	243	185	204	21.0909
qccc]ccc22bbccc::::	chr20:32255459-32255706(-)$1	247	103	122	20.1818
bb]ccc]a]aeeeee[ann	chr5:138629655-138629972(+)$1	317	176	195	22.2272
ff]bb]bb22ccc]bb]ff	chr19:1467299-1467542(-)$1	243	91	110	33.5909

#DB
((((((.((((((..((..	chr2:20423850-20424122(-)$1	1	55	74	22.2272
..))))))))...)).)))	chr19:1468580-1468829(-)$1	1	90	109	20.1818
)))))).)(((((((((.(	chr8:145687775-145688071(-)$1	1	118	137	28.8181
..((((((...((.((.((	chr19:538656-538923(+)$1	1	134	153	21.0909
((((((((((((.((((.(	chr17:41622773-41623039(+)$1	1	103	122	29.0454
)..(((.((.((((((.((	chr8:103424361-103424610(-)$1	1	82	101	23.1363
..(((((.(((.(((....	chr19:1585110-1585430(-)$1	1	49	68	24.0454
(((((((.((((....)))	chr14:23790595-23790854(+)$1	1	139	158	24.5000
..(((((((...(((((..	chr16:2029100-2029389(+)$1	1	91	110	23.8181
((..(((((((((.(((((	chr11:65325159-65325437(-)$1	1	49	68	23.1363
)..)))...))))..).))	chr8:30669833-30670093(-)$1	1	73	92	26.7727
.((..(((((((...((((	chr1:36788412-36788683(+)$1	1	55	74	28.5909
.((.((((((((((..(((	chr3:49755246-49755516(+)$1	1	102	121	23.5909
((((((((.(...).))))	chr11:637269-637528(+)$1	1	71	90	21.5454
((((((((((....((.((	chr1:27320165-27320415(+)$1	1	17	36	21.3181
.)))).))))))))))).)	chr16:4664336-4664608(-)$1	1	214	233	23.5909
..(((((..((((((((((	chr2:231902423-231902682(+)$1	1	73	92	28.1363
(((((..((((...(((((	chr1:234614071-234614338(-)$1	1	3	22	26.5454
))(.(((((((((.(((..	chr16:89788070-89788313(+)$1	1	185	204	21.0909
.))).)))..)))))....	chr20:32255459-32255706(-)$1	1	103	122	20.1818
)).))).).)(((((.(..	chr5:138629655-138629972(+)$1	1	176	195	22.2272
)).)).))..))).)).))	chr19:1467299-1467542(-)$1	1	91	110	33.5909

#PSSM
g : 0.27	A : 0.27	G : 0.22	c : 0.09	U : 0.09	C : 0.04	
G : 0.31	g : 0.31	U : 0.18	C : 0.13	c : 0.04	
G : 0.59	g : 0.27	C : 0.04	a : 0.04	c : 0.04	
G : 0.59	g : 0.31	C : 0.04	u : 0.04	
c : 0.36	C : 0.31	G : 0.18	U : 0.13	
G : 0.27	C : 0.27	c : 0.22	u : 0.09	U : 0.09	g : 0.04	
G : 0.54	g : 0.45	
G : 0.50	g : 0.40	A : 0.04	c : 0.04	
G : 0.54	g : 0.40	c : 0.04	
G : 0.45	g : 0.27	c : 0.13	C : 0.04	u : 0.04	A : 0.04	
c : 0.36	C : 0.27	G : 0.22	g : 0.09	U : 0.04	
C : 0.36	c : 0.31	g : 0.13	G : 0.09	A : 0.04	U : 0.04	
g : 0.36	G : 0.36	C : 0.13	a : 0.04	U : 0.04	c : 0.04	
G : 0.45	g : 0.40	c : 0.04	U : 0.04	C : 0.04	
G : 0.50	g : 0.40	a : 0.04	U : 0.04	
G : 0.45	g : 0.40	A : 0.09	c : 0.04	
c : 0.40	C : 0.40	G : 0.04	g : 0.04	U : 0.04	A : 0.04	
G : 0.45	g : 0.36	c : 0.09	U : 0.04	C : 0.04	
G : 0.40	g : 0.31	A : 0.09	u : 0.09	C : 0.04	c : 0.04	

#score	537.1818181818181
#seq	22
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_CDS_m1_run1.nuc.txt

#NT
GGGGCAGGGA	chr11:66039527-66039741(+)$1	214	18	28	15.6557
GGCGCGGAGC	chr11:747438-747668(+)$1	230	148	158	14.9180
GGGGCGAGGC	chr7:140396406-140396723(+)$1	317	96	106	18.0327
GGGGCCGGGC	chr10:102746814-102747072(-)$1	258	232	242	18.5245
GGGGCGGCGC	chr1:156024566-156024840(+)$1	274	222	232	18.4426
GGGGGGAGGC	chr19:49458855-49459134(+)$1	279	117	127	14.1803
gcggcggggc	chr13:113862834-113863074(-)$1	240	18	28	19.0983
GGGGAGGGGA	chr19:39926412-39926638(-)$1	226	174	184	15.9016
GGGGUGGGGG	chr11:66039177-66039429(+)$1	252	1	11	15.8196
AGGGCGGGGC	chr22:42084696-42084973(-)$1	277	17	27	18.5245
UGGCCGGGGC	chr8:146017277-146017516(-)$1	239	151	161	14.1803
GGGGAGCGGC	chr14:58666776-58667113(+)$1	337	179	189	14.2622
ggggCGGAGC	chr15:75165491-75165772(-)$1	281	1	11	18.8524
GGGGCGCAGC	chr2:231921580-231921858(+)$1	278	148	158	14.3442
GGGCCGGGGU	chr10:102289422-102289649(-)$1	227	54	64	15.0819
GGGGCGGGGA	chr17:79650465-79650729(-)$1	264	56	66	19.6721
GAAGCGGGGC	chr1:155231806-155232136(-)$1	330	84	94	15.1639
gggguggggc	chr11:65686287-65686579(-)$1	292	107	117	18.7704
GCGGCUGGGC	chr2:84686209-84686490(-)$1	281	270	280	15.0819
GGGGCGGGGC	chr9:124132302-124132624(-)$1	322	52	62	22.5409
GGGGCGGGUU	chr2:20251142-20251482(-)$1	340	82	92	14.6721
ggggcggggc	chr5:218340-218634(+)$1	294	213	223	22.5409
GGGGAUGGGC	chr16:89717891-89718155(-)$1	264	52	62	14.7540
GGGGAGGGGU	chr1:52344121-52344449(-)$1	328	38	48	15.4918
AGGGCGGGGC	chr19:4670128-4670468(-)$1	340	3	13	18.5245
GAggcggggc	chr5:171433350-171433607(-)$1	257	78	88	18.9344
GAUGCGGGGC	chr12:120966725-120967018(-)$1	293	133	143	14.9180
GGGGUGGGGG	chr12:104324206-104324443(+)$1	237	24	34	15.8196
CGGGCGGGGC	chr17:40118701-40119006(+)$1	305	213	223	18.3606
GGGGCGGAGG	chr2:47403507-47403750(-)$1	243	81	91	15.9016
GCGGGGGGGC	chr1:37980157-37980452(-)$1	295	33	43	15.2459
GCGGCGGGGC	chr17:29151440-29151816(-)$1	376	39	49	19.0983
GGGUCGGGGC	chr6:27100735-27101002(+)$1	267	242	252	18.1147
ggggcggggc	chr7:116139668-116140055(+)$1	387	73	83	22.5409
ggggcggggC	chr16:838194-838458(-)$1	264	47	57	22.5409
GGGGCGGGGC	chr15:41624526-41624875(-)$1	349	67	77	22.5409
UGAGCGGGGC	chrX:150565598-150565934(+)$1	336	242	252	14.5901
GAGGCGGGGC	chr16:30441100-30441429(-)$1	329	65	75	18.9344
AGGCCGGGGC	chr17:6915894-6916180(+)$1	286	3	13	14.3442
GGGGCCGAGC	chr14:93673579-93673841(+)$1	262	24	34	14.8360
gggggagggc	chr18:72920778-72921176(-)$1	398	31	41	14.6721
GCUGCGGGGC	chr3:93692421-93692696(-)$1	275	122	132	15.0819
GGGGCAGGGG	chr12:122750754-122751021(-)$1	267	43	53	15.5737
GGCGCGGGGA	chr18:71958996-71959285(-)$1	289	79	89	15.7377
ggggccgggg	chr6:133135807-133136018(+)$1	211	123	133	15.5737
GGGGCGGCGG	chr3:25824711-25825016(-)$1	305	103	113	15.4918
GCGGCGGGGC	chr4:79697514-79697801(+)$1	287	13	23	19.0983
GAGCCGGGGC	chr21:45139025-45139355(+)$1	330	49	59	14.7540
Cgggcggggc	chr20:57582054-57582394(-)$1	340	67	77	18.3606
GGAGCGGGGC	chr16:75600276-75600519(+)$1	243	227	237	18.7704
GCGGCUGGGC	chr15:77224176-77224425(+)$1	249	8	18	15.0819
GGGGCGGGCA	chr16:2256018-2256296(+)$1	278	210	220	15.1639
GGAGCGGGGA	chr2:178077403-178077672(+)$1	269	257	267	15.9016
GGGGCGGGCC	chr17:3571679-3571951(-)$1	272	25	35	18.0327
GGGACGGGGA	chr2:153573767-153573996(-)$1	229	167	177	15.2459
GGCGCGGGGC	chr1:154947064-154947334(+)$1	270	123	133	18.6065
AGGGUGGGGC	chr20:60718258-60718487(-)$1	229	21	31	14.7540
ggagcggggc	chr9:140149776-140150074(+)$1	298	64	74	18.7704
GGGGCGGAGC	chr13:73301575-73301874(-)$1	299	23	33	18.8524
GGGGCGGAGA	chr1:32687936-32688146(+)$1	210	21	31	15.9836

#otherMatches

#Struct PSSM
F}EEEEE:cc	chr1:11994757-11995014(+)$1	257	173	183	15.0000
eeeebbdddd	chr11:66039527-66039741(+)$1	214	18	28	15.6557
EEEE:ddddf	chr11:747438-747668(+)$1	230	148	158	14.9180
EYYBBCCCCC	chr7:140396406-140396723(+)$1	317	96	106	18.0327
xxeeeee]dd	chr10:102746814-102747072(-)$1	258	232	242	18.5245
oooggggggg	chr1:156024566-156024840(+)$1	274	222	232	18.4426
fff]dddd::	chr19:49458855-49459134(+)$1	279	117	127	14.1803
C{GGGGGGGK	chr13:113862834-113863074(-)$1	240	18	28	19.0983
JJJJJJJJYY	chr19:39926412-39926638(-)$1	226	174	184	15.9016
BB{DDDDDDD	chr11:66039177-66039429(+)$1	252	1	11	15.8196
nnnffffff2	chr22:42084696-42084973(-)$1	277	17	27	18.5245
iiiiiiii[b	chr8:146017277-146017516(-)$1	239	151	161	14.1803
]ahhhhhhhh	chr14:58666776-58667113(+)$1	337	179	189	14.2622
hhhhhhhddd	chr15:75165491-75165772(-)$1	281	1	11	18.8524
ccc[dddd[a	chr2:231921580-231921858(+)$1	278	148	158	14.3442
22cccHHHHH	chr10:102289422-102289649(-)$1	227	54	64	15.0819
qqqqdddd22	chr17:79650465-79650729(-)$1	264	56	66	19.6721
DDD{DDDDbb	chr1:155231806-155232136(-)$1	330	84	94	15.1639
qqqqqqqa]f	chr11:65686287-65686579(-)$1	292	107	117	18.7704
F}BBYYDDDD	chr2:84686209-84686490(-)$1	281	270	280	15.0819
{HHHHHHHH{	chr9:124132302-124132624(-)$1	322	52	62	22.5409
:::dddd[cc	chr2:20251142-20251482(-)$1	340	82	92	14.6721
GGGGYYDDDD	chr5:218340-218634(+)$1	294	213	223	22.5409
ffdddd!!bb	chr16:89717891-89718155(-)$1	264	52	62	14.7540
fffff[dddd	chr1:52344121-52344449(-)$1	328	38	48	15.4918
:=========	chr19:4670128-4670468(-)$1	340	3	13	18.5245
ddeeeeeccc	chr5:171433350-171433607(-)$1	257	78	88	18.9344
HHHH}A}DDD	chr12:120966725-120967018(-)$1	293	133	143	14.9180
mmmmdddd:I	chr12:104324206-104324443(+)$1	237	24	34	15.8196
:HHHHHHHH}	chr17:40118701-40119006(+)$1	305	213	223	18.3606
ee]ffffff]	chr2:47403507-47403750(-)$1	243	81	91	15.9016
ddddgggggg	chr1:37980157-37980452(-)$1	295	33	43	15.2459
CC{CCC{EEE	chr17:29151440-29151816(-)$1	376	39	49	19.0983
GGGYYDDDD}	chr6:27100735-27101002(+)$1	267	242	252	18.1147
HHHHHHGGGG	chr7:116139668-116140055(+)$1	387	73	83	22.5409
""eeeee[cc	chr16:838194-838458(-)$1	264	47	57	22.5409
bb]bbddddb	chr15:41624526-41624875(-)$1	349	67	77	22.5409
nnnnnccchh	chrX:150565598-150565934(+)$1	336	242	252	14.5901
mmmm======	chr16:30441100-30441429(-)$1	329	65	75	18.9344
:::::eeeee	chr17:6915894-6916180(+)$1	286	3	13	14.3442
d:hhhhhhhh	chr14:93673579-93673841(+)$1	262	24	34	14.8360
CCCEEEEEhh	chr18:72920778-72921176(-)$1	398	31	41	14.6721
========22	chr3:93692421-93692696(-)$1	275	122	132	15.0819
========dd	chr12:122750754-122751021(-)$1	267	43	53	15.5737
eee]eeeee:	chr18:71958996-71959285(-)$1	289	79	89	15.7377
33eeeee]cc	chr6:133135807-133136018(+)$1	211	123	133	15.5737
"eeeee[fff	chr3:25824711-25825016(-)$1	305	103	113	15.4918
[a[bb[eeee	chr4:79697514-79697801(+)$1	287	13	23	19.0983
GGGG{EEEEE	chr21:45139025-45139355(+)$1	330	49	59	14.7540
d[dddd[ccc	chr20:57582054-57582394(-)$1	340	67	77	18.3606
EEEEEEEEEE	chr16:75600276-75600519(+)$1	243	227	237	18.7704
eeeee[bb[e	chr15:77224176-77224425(+)$1	249	8	18	15.0819
ee[bb[aooo	chr16:2256018-2256296(+)$1	278	210	220	15.1639
IIIIIIIIYY	chr2:178077403-178077672(+)$1	269	257	267	15.9016
ECCCIIIIII	chr17:3571679-3571951(-)$1	272	25	35	18.0327
dddd]bbiii	chr2:153573767-153573996(-)$1	229	167	177	15.2459
ccc]ffffff	chr1:154947064-154947334(+)$1	270	123	133	18.6065
[ffffffccc	chr20:60718258-60718487(-)$1	229	21	31	14.7540
qqqbb22ggg	chr9:140149776-140150074(+)$1	298	64	74	18.7704
dd:::DDDDC	chr13:73301575-73301874(-)$1	299	23	33	18.8524
cccppppppp	chr1:32687936-32688146(+)$1	210	21	31	15.9836

#DB
).))))).((	chr1:11994757-11995014(+)$1	1	173	183	15.0000
((((((((((	chr11:66039527-66039741(+)$1	1	18	28	15.6557
)))).(((((	chr11:747438-747668(+)$1	1	148	158	14.9180
)..))(((((	chr7:140396406-140396723(+)$1	1	96	106	18.0327
..))))).))	chr10:102746814-102747072(-)$1	1	232	242	18.5245
...)))))))	chr1:156024566-156024840(+)$1	1	222	232	18.4426
))).))))..	chr19:49458855-49459134(+)$1	1	117	127	14.1803
(.(((((((.	chr13:113862834-113863074(-)$1	1	18	28	19.0983
))))))))..	chr19:39926412-39926638(-)$1	1	174	184	15.9016
((.(((((((	chr11:66039177-66039429(+)$1	1	1	11	15.8196
...)))))).	chr22:42084696-42084973(-)$1	1	17	27	18.5245
((((((((.(	chr8:146017277-146017516(-)$1	1	151	161	14.1803
.)))))))))	chr14:58666776-58667113(+)$1	1	179	189	14.2622
((((((((((	chr15:75165491-75165772(-)$1	1	1	11	18.8524
(((.((((.(	chr2:231921580-231921858(+)$1	1	148	158	14.3442
..)))(((((	chr10:102289422-102289649(-)$1	1	54	64	15.0819
....))))..	chr17:79650465-79650729(-)$1	1	56	66	19.6721
(((.((((((	chr1:155231806-155232136(-)$1	1	84	94	15.1639
.......).)	chr11:65686287-65686579(-)$1	1	107	117	18.7704
).))..))))	chr2:84686209-84686490(-)$1	1	270	280	15.0819
.((((((((.	chr9:124132302-124132624(-)$1	1	52	62	22.5409
...((((.((	chr2:20251142-20251482(-)$1	1	82	92	14.6721
))))..))))	chr5:218340-218634(+)$1	1	213	223	22.5409
((((((..((	chr16:89717891-89718155(-)$1	1	52	62	14.7540
(((((.((((	chr1:52344121-52344449(-)$1	1	38	48	15.4918
.(((((((((	chr19:4670128-4670468(-)$1	1	3	13	18.5245
))))))))))	chr5:171433350-171433607(-)$1	1	78	88	18.9344
)))).).)))	chr12:120966725-120967018(-)$1	1	133	143	14.9180
....)))).(	chr12:104324206-104324443(+)$1	1	24	34	15.8196
.)))))))).	chr17:40118701-40119006(+)$1	1	213	223	18.3606
)).)))))).	chr2:47403507-47403750(-)$1	1	81	91	15.9016
))))((((((	chr1:37980157-37980452(-)$1	1	33	43	15.2459
((.(((.(((	chr17:29151440-29151816(-)$1	1	39	49	19.0983
)))..)))).	chr6:27100735-27101002(+)$1	1	242	252	18.1147
((((((((((	chr7:116139668-116140055(+)$1	1	73	83	22.5409
..(((((.((	chr16:838194-838458(-)$1	1	47	57	22.5409
)).)))))))	chr15:41624526-41624875(-)$1	1	67	77	22.5409
.....)))))	chrX:150565598-150565934(+)$1	1	242	252	14.5901
....))))))	chr16:30441100-30441429(-)$1	1	65	75	18.9344
.....(((((	chr17:6915894-6916180(+)$1	1	3	13	14.3442
).((((((((	chr14:93673579-93673841(+)$1	1	24	34	14.8360
((((((((((	chr18:72920778-72921176(-)$1	1	31	41	14.6721
))))))))..	chr3:93692421-93692696(-)$1	1	122	132	15.0819
((((((((((	chr12:122750754-122751021(-)$1	1	43	53	15.5737
))).))))).	chr18:71958996-71959285(-)$1	1	79	89	15.7377
..))))).))	chr6:133135807-133136018(+)$1	1	123	133	15.5737
.(((((.(((	chr3:25824711-25825016(-)$1	1	103	113	15.4918
.(.((.((((	chr4:79697514-79697801(+)$1	1	13	23	19.0983
((((.(((((	chr21:45139025-45139355(+)$1	1	49	59	14.7540
(.((((.(((	chr20:57582054-57582394(-)$1	1	67	77	18.3606
))))))))))	chr16:75600276-75600519(+)$1	1	227	237	18.7704
(((((.((.(	chr15:77224176-77224425(+)$1	1	8	18	15.0819
((.((.(...	chr16:2256018-2256296(+)$1	1	210	220	15.1639
))))))))..	chr2:178077403-178077672(+)$1	1	257	267	15.9016
((((((((((	chr17:3571679-3571951(-)$1	1	25	35	18.0327
)))).))(((	chr2:153573767-153573996(-)$1	1	167	177	15.2459
))).))))))	chr1:154947064-154947334(+)$1	1	123	133	18.6065
.(((((((((	chr20:60718258-60718487(-)$1	1	21	31	14.7540
...))..)))	chr9:140149776-140150074(+)$1	1	64	74	18.7704
))...(((((	chr13:73301575-73301874(-)$1	1	23	33	18.8524
(((.......	chr1:32687936-32688146(+)$1	1	21	31	15.9836

#PSSM
G : 0.72	g : 0.14	A : 0.06	U : 0.03	C : 0.03	
G : 0.65	g : 0.14	C : 0.09	A : 0.08	c : 0.01	
G : 0.67	g : 0.16	A : 0.06	C : 0.04	U : 0.03	a : 0.01	
G : 0.72	g : 0.18	C : 0.06	U : 0.01	A : 0.01	
C : 0.68	c : 0.13	A : 0.06	U : 0.04	G : 0.03	u : 0.01	g : 0.01	
G : 0.72	g : 0.13	U : 0.04	A : 0.03	C : 0.03	a : 0.01	c : 0.01	
G : 0.77	g : 0.16	A : 0.03	C : 0.03	
G : 0.68	g : 0.16	A : 0.11	C : 0.03	
G : 0.77	g : 0.16	C : 0.03	A : 0.01	U : 0.01	
C : 0.57	A : 0.13	c : 0.13	G : 0.09	U : 0.04	g : 0.01	

#score	1034.2622950819682
#seq	61
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_CDS_m2_run1.nuc.txt

#NT
UCUUU	chr5:37027361-37027616(+)$1	255	81	86	15.0000
UCUUU	chr17:35620512-35620764(-)$1	252	72	77	15.0000
UCUUU	chr2:32710609-32710836(+)$1	227	73	78	15.0000
UCUUU	chr12:6691273-6691517(-)$1	244	47	52	15.0000
UCUUU	chr4:85701229-85701531(-)$1	302	68	73	15.0000
UCUUU	chr10:21875150-21875369(+)$1	219	53	58	15.0000
UCUUU	chr12:12333882-12334134(-)$1	252	32	37	15.0000
UCUUU	chr5:139908473-139908731(+)$1	258	115	120	15.0000
UCUUU	chr1:19474957-19475191(-)$1	234	84	89	15.0000
UCUUU	chr1:39916652-39916946(+)$1	294	97	102	15.0000
UCUUU	chr16:2140586-2140868(-)$1	282	96	101	15.0000
UCUUU	chr8:100513814-100514077(+)$1	263	239	244	15.0000
UCUUU	chr18:13052816-13053057(+)$1	241	93	98	15.0000
UCUUU	chr15:28422125-28422369(-)$1	244	30	35	15.0000
UCUUU	chr12:26864025-26864242(-)$1	217	32	37	15.0000
UCUUU	chr3:184049157-184049443(+)$1	286	44	49	15.0000
UCUUU	chr12:103306505-103306776(-)$1	271	261	266	15.0000
UCUUU	chr4:122617634-122617880(-)$1	246	91	96	15.0000
UCUUU	chr3:184049029-184049253(+)$1	224	172	177	15.0000
UCUUU	chr12:122995555-122995835(-)$1	280	194	199	15.0000
ucuuu	chr4:151835345-151835593(-)$1	248	90	95	15.0000
UCUUU	chr2:85553600-85553845(-)$1	245	144	149	15.0000
UCUUU	chr8:100108514-100108761(+)$1	247	3	8	15.0000
UCUUU	chr10:71921533-71921789(-)$1	256	121	126	15.0000
UCUUU	chr11:63960445-63960676(+)$1	231	42	47	15.0000
UCUUU	chr8:100115080-100115326(+)$1	246	80	85	15.0000
UCUUU	chr10:19884022-19884244(+)$1	222	90	95	15.0000
UCUUU	chr5:14366935-14367177(+)$1	242	184	189	15.0000
UCUUU	chr12:62929290-62929591(+)$1	301	5	10	15.0000
UCUUU	chr3:98312230-98312570(-)$1	340	114	119	15.0000
UCUUU	chr14:39645237-39645453(+)$1	216	34	39	15.0000
UCUUU	chr4:141300168-141300400(+)$1	232	193	198	15.0000
UCUUU	chr15:62212375-62212625(-)$1	250	131	136	15.0000
UCUUU	chr1:154574922-154575177(-)$1	255	49	54	15.0000
UCUUU	chr6:90452776-90453010(-)$1	234	33	38	15.0000
UCUUU	chr1:19512934-19513169(-)$1	235	147	152	15.0000
UCUUU	chr12:112654737-112654962(-)$1	225	148	153	15.0000
UCUUU	chr12:101776847-101777154(+)$1	307	283	288	15.0000
UCUUU	chr7:151851004-151851280(-)$1	276	25	30	15.0000
UCUUU	chr12:112654610-112654826(-)$1	216	12	17	15.0000
UCUUU	chr16:18830845-18831073(-)$1	228	3	8	15.0000
UCUUU	chr14:73542925-73543154(+)$1	229	90	95	15.0000
UCUUU	chr7:91674247-91674544(+)$1	297	59	64	15.0000
UCUUU	chr8:48769616-48769847(-)$1	231	100	105	15.0000
UCUUU	chr10:19676550-19676787(+)$1	237	211	216	15.0000
UCUUU	chr2:201677829-201678095(+)$1	266	105	110	15.0000
UCUUU	chr5:174919010-174919285(+)$1	275	78	83	15.0000
UCUUU	chr6:56351809-56352105(-)$1	296	213	218	15.0000

#otherMatches

#Struct PSSM
ccc!!	chr6:56330850-56331095(-)$1	245	80	85	15.0000
ooooo	chr5:37027361-37027616(+)$1	255	81	86	15.0000
fffff	chr17:35620512-35620764(-)$1	252	72	77	15.0000
g::::	chr2:32710609-32710836(+)$1	227	73	78	15.0000
WWWWW	chr12:6691273-6691517(-)$1	244	47	52	15.0000
nnnnn	chr4:85701229-85701531(-)$1	302	68	73	15.0000
ff!!e	chr10:21875150-21875369(+)$1	219	53	58	15.0000
FFfff	chr12:12333882-12334134(-)$1	252	32	37	15.0000
Bhhhh	chr5:139908473-139908731(+)$1	258	115	120	15.0000
nnncc	chr1:19474957-19475191(-)$1	234	84	89	15.0000
{DDDD	chr1:39916652-39916946(+)$1	294	97	102	15.0000
c####	chr16:2140586-2140868(-)$1	282	96	101	15.0000
nnnnn	chr8:100513814-100514077(+)$1	263	239	244	15.0000
hhhhh	chr18:13052816-13053057(+)$1	241	93	98	15.0000
ddd""	chr15:28422125-28422369(-)$1	244	30	35	15.0000
eeee$	chr12:26864025-26864242(-)$1	217	32	37	15.0000
dd]dd	chr3:184049157-184049443(+)$1	286	44	49	15.0000
ZZGGG	chr12:103306505-103306776(-)$1	271	261	266	15.0000
dd:FF	chr4:122617634-122617880(-)$1	246	91	96	15.0000
dd]ee	chr3:184049029-184049253(+)$1	224	172	177	15.0000
:::::	chr12:122995555-122995835(-)$1	280	194	199	15.0000
:::::	chr4:151835345-151835593(-)$1	248	90	95	15.0000
HHHHH	chr2:85553600-85553845(-)$1	245	144	149	15.0000
dddd!	chr8:100108514-100108761(+)$1	247	3	8	15.0000
]eeee	chr10:71921533-71921789(-)$1	256	121	126	15.0000
FOOOO	chr11:63960445-63960676(+)$1	231	42	47	15.0000
eeee:	chr8:100115080-100115326(+)$1	246	80	85	15.0000
sssss	chr10:19884022-19884244(+)$1	222	90	95	15.0000
G::::	chr5:14366935-14367177(+)$1	242	184	189	15.0000
::ggg	chr12:62929290-62929591(+)$1	301	5	10	15.0000
leeee	chr3:98312230-98312570(-)$1	340	114	119	15.0000
:dddd	chr14:39645237-39645453(+)$1	216	34	39	15.0000
dddd8	chr4:141300168-141300400(+)$1	232	193	198	15.0000
eee22	chr15:62212375-62212625(-)$1	250	131	136	15.0000
wwwww	chr1:154574922-154575177(-)$1	255	49	54	15.0000
UUUUU	chr6:90452776-90453010(-)$1	234	33	38	15.0000
c333e	chr1:19512934-19513169(-)$1	235	147	152	15.0000
dd:::	chr12:112654737-112654962(-)$1	225	148	153	15.0000
bb[ff	chr12:101776847-101777154(+)$1	307	283	288	15.0000
e[ddd	chr7:151851004-151851280(-)$1	276	25	30	15.0000
dd:::	chr12:112654610-112654826(-)$1	216	12	17	15.0000
:::::	chr16:18830845-18831073(-)$1	228	3	8	15.0000
gqqqq	chr14:73542925-73543154(+)$1	229	90	95	15.0000
$$$$e	chr7:91674247-91674544(+)$1	297	59	64	15.0000
cccnn	chr8:48769616-48769847(-)$1	231	100	105	15.0000
GGGGG	chr10:19676550-19676787(+)$1	237	211	216	15.0000
!dddd	chr2:201677829-201678095(+)$1	266	105	110	15.0000
2====	chr5:174919010-174919285(+)$1	275	78	83	15.0000
===="	chr6:56351809-56352105(-)$1	296	213	218	15.0000

#DB
(((..	chr6:56330850-56331095(-)$1	1	80	85	15.0000
.....	chr5:37027361-37027616(+)$1	1	81	86	15.0000
(((((	chr17:35620512-35620764(-)$1	1	72	77	15.0000
)....	chr2:32710609-32710836(+)$1	1	73	78	15.0000
.....	chr12:6691273-6691517(-)$1	1	47	52	15.0000
.....	chr4:85701229-85701531(-)$1	1	68	73	15.0000
((..(	chr10:21875150-21875369(+)$1	1	53	58	15.0000
(((((	chr12:12333882-12334134(-)$1	1	32	37	15.0000
(((((	chr5:139908473-139908731(+)$1	1	115	120	15.0000
...))	chr1:19474957-19475191(-)$1	1	84	89	15.0000
.((((	chr1:39916652-39916946(+)$1	1	97	102	15.0000
(....	chr16:2140586-2140868(-)$1	1	96	101	15.0000
.....	chr8:100513814-100514077(+)$1	1	239	244	15.0000
)))))	chr18:13052816-13053057(+)$1	1	93	98	15.0000
(((..	chr15:28422125-28422369(-)$1	1	30	35	15.0000
((((.	chr12:26864025-26864242(-)$1	1	32	37	15.0000
)).))	chr3:184049157-184049443(+)$1	1	44	49	15.0000
..)))	chr12:103306505-103306776(-)$1	1	261	266	15.0000
)).))	chr4:122617634-122617880(-)$1	1	91	96	15.0000
)).))	chr3:184049029-184049253(+)$1	1	172	177	15.0000
.....	chr12:122995555-122995835(-)$1	1	194	199	15.0000
.....	chr4:151835345-151835593(-)$1	1	90	95	15.0000
)))))	chr2:85553600-85553845(-)$1	1	144	149	15.0000
((((.	chr8:100108514-100108761(+)$1	1	3	8	15.0000
.))))	chr10:71921533-71921789(-)$1	1	121	126	15.0000
(....	chr11:63960445-63960676(+)$1	1	42	47	15.0000
)))).	chr8:100115080-100115326(+)$1	1	80	85	15.0000
.....	chr10:19884022-19884244(+)$1	1	90	95	15.0000
)....	chr5:14366935-14367177(+)$1	1	184	189	15.0000
..(((	chr12:62929290-62929591(+)$1	1	5	10	15.0000
.))))	chr3:98312230-98312570(-)$1	1	114	119	15.0000
.((((	chr14:39645237-39645453(+)$1	1	34	39	15.0000
)))).	chr4:141300168-141300400(+)$1	1	193	198	15.0000
)))..	chr15:62212375-62212625(-)$1	1	131	136	15.0000
.....	chr1:154574922-154575177(-)$1	1	49	54	15.0000
.....	chr6:90452776-90453010(-)$1	1	33	38	15.0000
)...)	chr1:19512934-19513169(-)$1	1	147	152	15.0000
))...	chr12:112654737-112654962(-)$1	1	148	153	15.0000
((.((	chr12:101776847-101777154(+)$1	1	283	288	15.0000
(.(((	chr7:151851004-151851280(-)$1	1	25	30	15.0000
))...	chr12:112654610-112654826(-)$1	1	12	17	15.0000
.....	chr16:18830845-18831073(-)$1	1	3	8	15.0000
(....	chr14:73542925-73543154(+)$1	1	90	95	15.0000
....(	chr7:91674247-91674544(+)$1	1	59	64	15.0000
(((..	chr8:48769616-48769847(-)$1	1	100	105	15.0000
)))))	chr10:19676550-19676787(+)$1	1	211	216	15.0000
.((((	chr2:201677829-201678095(+)$1	1	105	110	15.0000
.))))	chr5:174919010-174919285(+)$1	1	78	83	15.0000
((((.	chr6:56351809-56352105(-)$1	1	213	218	15.0000

#PSSM
U : 0.97	u : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
U : 0.97	u : 0.02	
U : 0.97	u : 0.02	

#score	735.0000000000001
#seq	49
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_UTR_m2_run1.nuc.txt

#NT
gggacgg	chr3:14989009-14989269(-)$1	260	41	48	13.7586
gggccgg	chr9:130331080-130331356(-)$1	276	111	118	17.5517
gggccgg	chr2:54197770-54198043(-)$1	273	71	78	17.5517
GGCCCGG	chr19:4038738-4038998(+)$1	260	128	135	13.2413
GGGCGGG	chr7:77166503-77166748(+)$1	245	65	72	13.7586
GGGCCAG	chr22:50016293-50016538(-)$1	245	40	47	14.1896
GGGCCGG	chr16:3767279-3767620(-)$1	341	231	238	17.5517
gggcggg	chr20:35491717-35491998(-)$1	281	0	7	13.7586
GGGUCGG	chr5:138629435-138629694(+)$1	259	84	91	13.8448
GGGCAGG	chr11:61583857-61584097(-)$1	240	56	63	13.7586
GGGGCGG	chr16:89787368-89787710(+)$1	342	83	90	13.8448
GGGACGG	chr7:6522977-6523228(-)$1	251	35	42	13.7586
GGGCCGG	chr7:150777503-150777865(-)$1	362	179	186	17.5517
gggcugg	chr22:50013874-50014166(-)$1	292	93	100	13.9310
GGGUCGG	chr8:102217054-102217310(-)$1	256	103	110	13.8448
GGGCCCG	chr6:167369852-167370093(-)$1	241	185	192	14.1034
GGGGCGG	chr5:176738850-176739091(-)$1	241	47	54	13.8448
GGGCCGG	chr6:3259155-3259417(+)$1	262	79	86	17.5517
gggccgg	chr19:19739423-19739658(-)$1	235	28	35	17.5517
GGGCCGG	chr1:212458793-212459051(+)$1	258	91	98	17.5517
GGGCCGG	chr12:109124817-109125064(-)$1	247	42	49	17.5517
GGGCCAg	chr19:50985396-50985651(+)$1	255	68	75	14.1896
GGGCCUG	chr22:50050787-50051042(-)$1	255	113	120	14.1896
gggccgg	chrX:152954283-152954576(+)$1	293	167	174	17.5517
GGGCCUG	chr22:50050721-50050960(-)$1	239	31	38	14.1896
GGGCUGG	chr19:55543601-55543909(+)$1	308	177	184	13.9310
GGGCCAG	chr19:4037881-4038138(+)$1	257	41	48	14.1896
GGGCCGG	chr19:2425978-2426265(-)$1	287	248	255	17.5517
GGGCAGG	chr22:50016199-50016431(-)$1	232	176	183	13.7586
GGGACGG	chr22:20105348-20105583(+)$1	235	115	122	13.7586
GGGGCGG	chr22:20004133-20004419(-)$1	286	32	39	13.8448
GGGCCUG	chr17:75212399-75212674(+)$1	275	182	189	14.1896
GGGCCCG	chr19:2270264-2270523(+)$1	259	2	9	14.1034
GGGCGGG	chr1:155532127-155532412(-)$1	285	18	25	13.7586
GGGCCGG	chr16:1428942-1429178(-)$1	236	104	111	17.5517
GGGCUGG	chr20:62330182-62330422(-)$1	240	119	126	13.9310
GGGCCGG	chr1:182360387-182360648(-)$1	261	146	153	17.5517
GGCCCGG	chr1:1510060-1510323(-)$1	263	208	215	13.2413
gggccgg	chr1:22263565-22263826(-)$1	261	106	113	17.5517
GGGUCGG	chr5:138629494-138629738(+)$1	244	25	32	13.8448
ggcccgg	chr12:116714790-116715053(-)$1	263	8	15	13.2413
gggccgg	chr8:102217356-102217609(-)$1	253	2	9	17.5517
GGGUCGG	chr17:7476586-7476837(+)$1	251	78	85	13.8448
GGGCCGG	chr6:158244244-158244495(+)$1	251	201	208	17.5517
GGGCCAG	chr1:1190003-1190264(-)$1	261	169	176	14.1896
GGGCCGG	chr10:43891997-43892284(-)$1	287	78	85	17.5517
GGGCCGG	chr1:1822247-1822549(-)$1	302	125	132	17.5517
GGGCCGG	chr9:131873722-131874006(+)$1	284	210	217	17.5517
GGGCCAG	chr22:20067968-20068234(+)$1	266	249	256	14.1896
GGGCCUG	chr17:75211637-75211875(+)$1	238	58	65	14.1896
GGGCUGG	chr7:1577326-1577614(+)$1	288	70	77	13.9310
GGGCCUG	chr7:5569343-5569620(-)$1	277	125	132	14.1896
gggcagg	chr6:86352561-86352821(-)$1	260	35	42	13.7586
GGGCUGG	chr7:933171-933479(+)$1	308	292	299	13.9310
gggcccg	chr5:154136560-154136852(+)$1	292	86	93	14.1034
GGGGCGG	chr19:1104622-1104880(+)$1	258	91	98	13.8448
GGCCCGG	chr19:2425637-2425864(-)$1	227	169	176	13.2413

#otherMatches

#Struct PSSM
B{HHHHH	chr7:5569474-5569812(-)$1	338	113	120	14.1034
ccooooo	chr3:14989009-14989269(-)$1	260	41	48	13.7586
333bb22	chr9:130331080-130331356(-)$1	276	111	118	17.5517
]dddd]a	chr2:54197770-54198043(-)$1	273	71	78	17.5517
EEEE}BB	chr19:4038738-4038998(+)$1	260	128	135	13.2413
ggggggg	chr7:77166503-77166748(+)$1	245	65	72	13.7586
ggg22dd	chr22:50016293-50016538(-)$1	245	40	47	14.1896
GGG}DDD	chr16:3767279-3767620(-)$1	341	231	238	17.5517
:::::::	chr20:35491717-35491998(-)$1	281	0	7	13.7586
ccc[bb[	chr5:138629435-138629694(+)$1	259	84	91	13.8448
eddddll	chr11:61583857-61584097(-)$1	240	56	63	13.7586
FFFFFFD	chr16:89787368-89787710(+)$1	342	83	90	13.8448
nnbb333	chr7:6522977-6523228(-)$1	251	35	42	13.7586
fcccfff	chr7:150777503-150777865(-)$1	362	179	186	17.5517
:CCCA{I	chr22:50013874-50014166(-)$1	292	93	100	13.9310
ggggg^^	chr8:102217054-102217310(-)$1	256	103	110	13.8448
[eeeeeb	chr6:167369852-167370093(-)$1	241	185	192	14.1034
hhhhhhh	chr5:176738850-176739091(-)$1	241	47	54	13.8448
]dddd]c	chr6:3259155-3259417(+)$1	262	79	86	17.5517
llccc22	chr19:19739423-19739658(-)$1	235	28	35	17.5517
55dddd2	chr1:212458793-212459051(+)$1	258	91	98	17.5517
+++bb[c	chr12:109124817-109125064(-)$1	247	42	49	17.5517
EDDDD{C	chr19:50985396-50985651(+)$1	255	68	75	14.1896
e[eeeee	chr22:50050787-50051042(-)$1	255	113	120	14.1896
eeee]ee	chrX:152954283-152954576(+)$1	293	167	174	17.5517
ddddooo	chr22:50050721-50050960(-)$1	239	31	38	14.1896
hhhhhhc	chr19:55543601-55543909(+)$1	308	177	184	13.9310
bbeeeee	chr19:4037881-4038138(+)$1	257	41	48	14.1896
ffff[cc	chr19:2425978-2426265(-)$1	287	248	255	17.5517
eefffff	chr22:50016199-50016431(-)$1	232	176	183	13.7586
HHHYYEE	chr22:20105348-20105583(+)$1	235	115	122	13.7586
cceeeee	chr22:20004133-20004419(-)$1	286	32	39	13.8448
ffffff3	chr17:75212399-75212674(+)$1	275	182	189	14.1896
EEEHHHH	chr19:2270264-2270523(+)$1	259	2	9	14.1034
eee[add	chr1:155532127-155532412(-)$1	285	18	25	13.7586
b]ccc]e	chr16:1428942-1429178(-)$1	236	104	111	17.5517
ppeeeee	chr20:62330182-62330422(-)$1	240	119	126	13.9310
mdddd:i	chr1:182360387-182360648(-)$1	261	146	153	17.5517
ffffa!!	chr1:1510060-1510323(-)$1	263	208	215	13.2413
b22ccc]	chr1:22263565-22263826(-)$1	261	106	113	17.5517
ccc[bb[	chr5:138629494-138629738(+)$1	244	25	32	13.8448
IIKKCCC	chr12:116714790-116715053(-)$1	263	8	15	13.2413
BB{GGGG	chr8:102217356-102217609(-)$1	253	2	9	17.5517
qeeeee]	chr17:7476586-7476837(+)$1	251	78	85	13.8448
eeee[cc	chr6:158244244-158244495(+)$1	251	201	208	17.5517
]eeeee5	chr1:1190003-1190264(-)$1	261	169	176	14.1896
eeeeggg	chr10:43891997-43892284(-)$1	287	78	85	17.5517
c[dddd[	chr1:1822247-1822549(-)$1	302	125	132	17.5517
}GGGGGG	chr9:131873722-131874006(+)$1	284	210	217	17.5517
eeeee::	chr22:20067968-20068234(+)$1	266	249	256	14.1896
mccc]a]	chr17:75211637-75211875(+)$1	238	58	65	14.1896
C{BBCCC	chr7:1577326-1577614(+)$1	288	70	77	13.9310
gg####c	chr7:5569343-5569620(-)$1	277	125	132	14.1896
LCCCLLL	chr6:86352561-86352821(-)$1	260	35	42	13.7586
eeebb]a	chr7:933171-933479(+)$1	308	292	299	13.9310
e[ggggg	chr5:154136560-154136852(+)$1	292	86	93	14.1034
eebbeee	chr19:1104622-1104880(+)$1	258	91	98	13.8448
eee22a]	chr19:2425637-2425864(-)$1	227	169	176	13.2413

#DB
(.(((((	chr7:5569474-5569812(-)$1	1	113	120	14.1034
((.....	chr3:14989009-14989269(-)$1	1	41	48	13.7586
...))..	chr9:130331080-130331356(-)$1	1	111	118	17.5517
.)))).)	chr2:54197770-54198043(-)$1	1	71	78	17.5517
)))).))	chr19:4038738-4038998(+)$1	1	128	135	13.2413
(((((((	chr7:77166503-77166748(+)$1	1	65	72	13.7586
)))..))	chr22:50016293-50016538(-)$1	1	40	47	14.1896
))).)))	chr16:3767279-3767620(-)$1	1	231	238	17.5517
.......	chr20:35491717-35491998(-)$1	1	0	7	13.7586
(((.((.	chr5:138629435-138629694(+)$1	1	84	91	13.8448
(((((..	chr11:61583857-61584097(-)$1	1	56	63	13.7586
(((((((	chr16:89787368-89787710(+)$1	1	83	90	13.8448
..))...	chr7:6522977-6523228(-)$1	1	35	42	13.7586
)((((((	chr7:150777503-150777865(-)$1	1	179	186	17.5517
.((((.(	chr22:50013874-50014166(-)$1	1	93	100	13.9310
(((((..	chr8:102217054-102217310(-)$1	1	103	110	13.8448
.((((((	chr6:167369852-167370093(-)$1	1	185	192	14.1034
)))))))	chr5:176738850-176739091(-)$1	1	47	54	13.8448
.)))).)	chr6:3259155-3259417(+)$1	1	79	86	17.5517
..)))..	chr19:19739423-19739658(-)$1	1	28	35	17.5517
..)))).	chr1:212458793-212459051(+)$1	1	91	98	17.5517
...((.(	chr12:109124817-109125064(-)$1	1	42	49	17.5517
(((((.(	chr19:50985396-50985651(+)$1	1	68	75	14.1896
(.(((((	chr22:50050787-50051042(-)$1	1	113	120	14.1896
)))).))	chrX:152954283-152954576(+)$1	1	167	174	17.5517
((((...	chr22:50050721-50050960(-)$1	1	31	38	14.1896
))))))(	chr19:55543601-55543909(+)$1	1	177	184	13.9310
(((((((	chr19:4037881-4038138(+)$1	1	41	48	14.1896
((((.((	chr19:2425978-2426265(-)$1	1	248	255	17.5517
))(((((	chr22:50016199-50016431(-)$1	1	176	183	13.7586
)))..))	chr22:20105348-20105583(+)$1	1	115	122	13.7586
))(((((	chr22:20004133-20004419(-)$1	1	32	39	13.8448
)))))).	chr17:75212399-75212674(+)$1	1	182	189	14.1896
(((((((	chr19:2270264-2270523(+)$1	1	2	9	14.1034
(((.(((	chr1:155532127-155532412(-)$1	1	18	25	13.7586
).))).)	chr16:1428942-1429178(-)$1	1	104	111	17.5517
..)))))	chr20:62330182-62330422(-)$1	1	119	126	13.9310
.)))).(	chr1:182360387-182360648(-)$1	1	146	153	17.5517
(((((..	chr1:1510060-1510323(-)$1	1	208	215	13.2413
)..))).	chr1:22263565-22263826(-)$1	1	106	113	17.5517
(((.((.	chr5:138629494-138629738(+)$1	1	25	32	13.8448
((..(((	chr12:116714790-116715053(-)$1	1	8	15	13.2413
((.((((	chr8:102217356-102217609(-)$1	1	2	9	17.5517
.))))).	chr17:7476586-7476837(+)$1	1	78	85	13.8448
((((.((	chr6:158244244-158244495(+)$1	1	201	208	17.5517
.))))).	chr1:1190003-1190264(-)$1	1	169	176	14.1896
)))))))	chr10:43891997-43892284(-)$1	1	78	85	17.5517
(.((((.	chr1:1822247-1822549(-)$1	1	125	132	17.5517
.))))))	chr9:131873722-131874006(+)$1	1	210	217	17.5517
)))))..	chr22:20067968-20068234(+)$1	1	249	256	14.1896
.))).).	chr17:75211637-75211875(+)$1	1	58	65	14.1896
(.(((((	chr7:1577326-1577614(+)$1	1	70	77	13.9310
((....(	chr7:5569343-5569620(-)$1	1	125	132	14.1896
.(((...	chr6:86352561-86352821(-)$1	1	35	42	13.7586
))))).)	chr7:933171-933479(+)$1	1	292	299	13.9310
(.(((((	chr5:154136560-154136852(+)$1	1	86	93	14.1034
)))))))	chr19:1104622-1104880(+)$1	1	91	98	13.8448
)))..).	chr19:2425637-2425864(-)$1	1	169	176	13.2413

#PSSM
G : 0.79	g : 0.20	
G : 0.79	g : 0.20	
G : 0.74	g : 0.18	C : 0.05	c : 0.01	
C : 0.62	c : 0.18	U : 0.06	G : 0.06	A : 0.03	a : 0.01	
C : 0.65	c : 0.15	U : 0.06	G : 0.03	A : 0.03	g : 0.01	u : 0.01	a : 0.01	
G : 0.56	g : 0.18	A : 0.08	U : 0.08	C : 0.05	c : 0.01	
G : 0.77	g : 0.22	

#score	871.4482758620691
#seq	58
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_transcript_m2_run2.nuc.txt

#NT
CCCAGCCCCGCCAGGC	chr16:88870315-88870551(+)$1	236	11	27	29.8367
cccggcgcggcgcggc	chr3:141595429-141595715(+)$1	286	37	53	16.6734
ccgacccccgccggcc	chr12:120972416-120972682(+)$1	266	109	125	20.7551
ACCCACCCCGCCAAGC	chr1:35657975-35658214(-)$1	239	61	77	18.4081
CUCGGCCCCGCCCGCC	chr1:35658199-35658561(-)$1	362	297	313	21.0612
CCCAGCCCCGCCGGGC	chr1:109643002-109643220(+)$1	218	14	30	29.1224
CCCCGUGUCCCCAGGC	chr19:3983012-3983303(-)$1	291	273	289	15.2448
CCCAGCCCCGCCAGGC	chr16:88870214-88870492(+)$1	278	112	128	29.8367
CCCAGCGGCGCGACGC	chr7:5570061-5570331(-)$1	270	77	93	16.5714
CCCUGCGGGGCCCGGC	chr1:109643020-109643250(+)$1	230	118	134	16.5714
CCCGGCCCCGCCGCGC	chr19:6424621-6424892(-)$1	271	163	179	25.2448
ccccgcgcccccagcc	chr16:58231517-58231871(-)$1	354	46	62	20.2448
CCCCUCCCCACCGUGC	chr16:30079896-30080121(+)$1	225	202	218	19.3265
CCAGGCCCCGACAGGC	chr16:2015132-2015366(+)$1	234	163	179	20.1428
ccgAGCCCCUCCAGGU	chr16:29818320-29818640(+)$1	320	18	34	19.1224
CCCAGCCCCGCCAGGC	chr16:88870116-88870414(+)$1	298	210	226	29.8367
CGCAGCCGCCCCCCGC	chr17:80049218-80049476(-)$1	258	109	125	16.1632
CCGCGCCCCGCUAGGC	chrX:152953477-152953693(+)$1	216	164	180	22.4897
CCGCGCCCCGCUAGGC	chrX:152953601-152953886(+)$1	285	40	56	22.4897
GCCUCUCCCGCCGGGC	chr5:70883206-70883427(+)$1	221	88	104	17.1836
UCCUGCCCCGCGGCGC	chr6:37138029-37138340(+)$1	311	34	50	17.5918
CCCCUCCUCCCCCGGC	chr2:55276819-55277078(-)$1	259	72	88	19.8367
CCCUCCCGCUCCAGCC	chr7:75677322-75677621(+)$1	299	140	156	16.8775
CCCUCUcccgcccgcc	chr12:53845876-53846170(+)$1	294	52	68	18.9183
CCCCUCCUCCCCCGGC	chr2:55276878-55277193(-)$1	315	187	203	19.8367
CCCCACCCCGGCCGGC	chr11:61734777-61735183(-)$1	406	150	166	21.0612
CCCAGCCCCGCCGGGC	chr1:109642901-109643142(+)$1	241	115	131	29.1224
GCCACCCCCGCCAACC	chr1:32479388-32479656(+)$1	268	129	145	17.1836
ccgAGCCCCUCCAGGU	chr16:29818267-29818520(+)$1	253	71	87	19.1224
CCCGUCCCCGCCACCC	chr20:62152052-62152310(+)$1	258	140	156	20.7551
CCCCGCCCCCCCAGCC	chr19:50354486-50354835(+)$1	349	306	322	24.1224
CCCAGCCCCGCCGGGC	chr1:109642946-109643170(+)$1	224	70	86	29.1224
CCCCUCCCCACCGUGC	chr16:30080038-30080308(+)$1	270	60	76	19.3265
ccccggcccucccggc	chr20:57466518-57466792(+)$1	274	180	196	21.5714
CUCGGCCCCGCCCGCC	chr1:35658087-35658361(-)$1	274	97	113	21.0612
CCCAGCCCCGGCACUC	chr8:101733713-101733973(-)$1	260	88	104	19.1224
CCGAUccgcgcccgcc	chr1:156721254-156721539(-)$1	285	122	138	17.5918
ccucggcccgccaggc	chr11:2398561-2398877(+)$1	316	110	126	21.2653
CCCAGCUCCCCCCGCC	chr6:34212678-34212944(+)$1	266	211	227	19.9387
CCCAUCCCCGCUUCGC	chr11:2160295-2160563(-)$1	268	189	205	19.0204
CCCGGCCCCGCCGUGG	chr15:75230176-75230486(-)$1	310	215	231	20.0408
GCCUCUCCCGCCGGGC	chr5:70883202-70883406(+)$1	204	92	108	17.1836
UCCUGCCCCGCGGCGC	chr6:37137955-37138229(+)$1	274	108	124	17.5918
CCCAGCCCCGCCGGGC	chr1:109642970-109643202(+)$1	232	46	62	29.1224
CCGCGCCCCGCUAGGC	chrX:152953540-152953801(+)$1	261	101	117	22.4897
CCCACCCCCGCCCCAC	chr12:6875608-6875935(+)$1	327	64	80	20.4489
cccggccggccccggc	chr11:2160379-2160642(-)$1	263	51	67	18.0000
CCGAGCCACGCGCGGC	chr11:810132-810381(+)$1	249	6	22	18.9183

#otherMatches

#Struct PSSM
bpppppppbb:hhhhh	chr2:70314566-70314898(+)$1	332	39	55	15.5510
DDKKCCC{BBNNNNNE	chr16:88870315-88870551(+)$1	236	11	27	29.8367
f:iiiiiiiii[ccc[	chr3:141595429-141595715(+)$1	286	37	53	16.6734
b[eeeee!!bbacccp	chr12:120972416-120972682(+)$1	266	109	125	20.7551
::::gggggggooooo	chr1:35657975-35658214(-)$1	239	61	77	18.4081
cc]bb4444bba]ccc	chr1:35658199-35658561(-)$1	362	297	313	21.0612
BBKKGGGGGGG{FFFF	chr1:109643002-109643220(+)$1	218	14	30	29.1224
FFFFF}BBYYFFFFFF	chr19:3983012-3983303(-)$1	291	273	289	15.2448
b"""bb"""bb!!ccc	chr16:88870214-88870492(+)$1	278	112	128	29.8367
rrrbb]eeeeefffff	chr7:5570061-5570331(-)$1	270	77	93	16.5714
FFF}GGGGGGG:::a[	chr1:109643020-109643250(+)$1	230	118	134	16.5714
dddd[hhhhhhhh[bb	chr19:6424621-6424892(-)$1	271	163	179	25.2448
nnnneeeeebb]dddd	chr16:58231517-58231871(-)$1	354	46	62	20.2448
BDDDDYYDDDD}BBFF	chr16:30079896-30080121(+)$1	225	202	218	19.3265
ggggggg[bb[a[ddd	chr16:2015132-2015366(+)$1	234	163	179	20.1428
HHdddd"""cccmmmm	chr16:29818320-29818640(+)$1	320	18	34	19.1224
ppppbb333a]fffff	chr16:88870116-88870414(+)$1	298	210	226	29.8367
DDYYFFFFFFBBBBCC	chr17:80049218-80049476(-)$1	258	109	125	16.1632
=========:::dddd	chrX:152953477-152953693(+)$1	216	164	180	22.4897
eee"""dddd!!dddd	chrX:152953601-152953886(+)$1	285	40	56	22.4897
bbpppppppbbeeeee	chr5:70883206-70883427(+)$1	221	88	104	17.1836
TTTEEEEE{A{BB{II	chr6:37138029-37138340(+)$1	311	34	50	17.5918
xxxxxxxxxxxxxddd	chr2:55276819-55277078(-)$1	259	72	88	19.8367
c:DDDD::DDDD{CCC	chr7:75677322-75677621(+)$1	299	140	156	16.8775
:::::::::bb!!bb!	chr12:53845876-53846170(+)$1	294	52	68	18.9183
xxxxxxxxxxxxxddd	chr2:55276878-55277193(-)$1	315	187	203	19.8367
bb:::::::ccc[ccc	chr11:61734777-61735183(-)$1	406	150	166	21.0612
:EEEEE{CCC:ddddm	chr1:109642901-109643142(+)$1	241	115	131	29.1224
cccdddd:CCC:::::	chr1:32479388-32479656(+)$1	268	129	145	17.1836
g[ddddbb"""ddddm	chr16:29818267-29818520(+)$1	253	71	87	19.1224
JJJJJJJJBBIIIIII	chr20:62152052-62152310(+)$1	258	140	156	20.7551
c:::FFFFFF::eeee	chr19:50354486-50354835(+)$1	349	306	322	24.1224
::::GGGGGGG{FFFF	chr1:109642946-109643170(+)$1	224	70	86	29.1224
55ffffffddddffff	chr16:30080038-30080308(+)$1	270	60	76	19.3265
b22dddddddd::ccc	chr20:57466518-57466792(+)$1	274	180	196	21.5714
cc]bb4444bba]ccc	chr1:35658087-35658361(-)$1	274	97	113	21.0612
::::ccca[ccc[a[b	chr8:101733713-101733973(-)$1	260	88	104	19.1224
BZZZEEEEE}GGGGGG	chr1:156721254-156721539(-)$1	285	122	138	17.5918
EE{DDDD::ccc[ccc	chr11:2398561-2398877(+)$1	316	110	126	21.2653
555dddd]affffff]	chr6:34212678-34212944(+)$1	266	211	227	19.9387
^^^^^^^^^^^^^^^^	chr11:2160295-2160563(-)$1	268	189	205	19.0204
d[ddddllldddd]dd	chr15:75230176-75230486(-)$1	310	215	231	20.0408
bbpppppppbbeeeee	chr5:70883202-70883406(+)$1	204	92	108	17.1836
b]dddd333bb]bbee	chr6:37137955-37138229(+)$1	274	108	124	17.5918
BBKKGGGGGGG{FFFF	chr1:109642970-109643202(+)$1	232	46	62	29.1224
hhhhh:dddd!!dddd	chrX:152953540-152953801(+)$1	261	101	117	22.4897
fff:IIIIIIIII{CC	chr12:6875608-6875935(+)$1	327	64	80	20.4489
dd[bb[ccc"""eeee	chr11:2160379-2160642(-)$1	263	51	67	18.0000
e[ccc!!eeeeedddd	chr11:810132-810381(+)$1	249	6	22	18.9183

#DB
(.......)).(((((	chr2:70314566-70314898(+)$1	1	39	55	15.5510
((..(((.((.....(	chr16:88870315-88870551(+)$1	1	11	27	29.8367
).(((((((((.(((.	chr3:141595429-141595715(+)$1	1	37	53	16.6734
(.(((((..((((((.	chr12:120972416-120972682(+)$1	1	109	125	20.7551
....(((((((.....	chr1:35657975-35658214(-)$1	1	61	77	18.4081
)).))....))).)))	chr1:35658199-35658561(-)$1	1	297	313	21.0612
((..(((((((.((((	chr1:109643002-109643220(+)$1	1	14	30	29.1224
))))).))..))))))	chr19:3983012-3983303(-)$1	1	273	289	15.2448
(...((...((..(((	chr16:88870214-88870492(+)$1	1	112	128	29.8367
...)).)))))(((((	chr7:5570061-5570331(-)$1	1	77	93	16.5714
))).)))))))...(.	chr1:109643020-109643250(+)$1	1	118	134	16.5714
((((.((((((((.((	chr19:6424621-6424892(-)$1	1	163	179	25.2448
....))))))).))))	chr16:58231517-58231871(-)$1	1	46	62	20.2448
)))))..)))).))))	chr16:30079896-30080121(+)$1	1	202	218	19.3265
(((((((.((.(.(((	chr16:2015132-2015366(+)$1	1	163	179	20.1428
((((((...(((....	chr16:29818320-29818640(+)$1	1	18	34	19.1224
....))...).)))))	chr16:88870116-88870414(+)$1	1	210	226	29.8367
))..))))))))))))	chr17:80049218-80049476(-)$1	1	109	125	16.1632
)))))))))...((((	chrX:152953477-152953693(+)$1	1	164	180	22.4897
(((...((((..((((	chrX:152953601-152953886(+)$1	1	40	56	22.4897
((.......)))))))	chr5:70883206-70883427(+)$1	1	88	104	17.1836
...(((((.(.((.((	chr6:37138029-37138340(+)$1	1	34	50	17.5918
.............)))	chr2:55276819-55277078(-)$1	1	72	88	19.8367
).))))..((((.(((	chr7:75677322-75677621(+)$1	1	140	156	16.8775
.........((..((.	chr12:53845876-53846170(+)$1	1	52	68	18.9183
.............)))	chr2:55276878-55277193(-)$1	1	187	203	19.8367
)).......(((.(((	chr11:61734777-61735183(-)$1	1	150	166	21.0612
.(((((.(((.((((.	chr1:109642901-109643142(+)$1	1	115	131	29.1224
))))))).))).....	chr1:32479388-32479656(+)$1	1	129	145	17.1836
(.((((((...((((.	chr16:29818267-29818520(+)$1	1	71	87	19.1224
((((((((((((((((	chr20:62152052-62152310(+)$1	1	140	156	20.7551
)...))))))..((((	chr19:50354486-50354835(+)$1	1	306	322	24.1224
....(((((((.((((	chr1:109642946-109643170(+)$1	1	70	86	29.1224
..))))))))))((((	chr16:30080038-30080308(+)$1	1	60	76	19.3265
)..))))))))..(((	chr20:57466518-57466792(+)$1	1	180	196	21.5714
)).))....))).)))	chr1:35658087-35658361(-)$1	1	97	113	21.0612
....((((.(((.(.(	chr8:101733713-101733973(-)$1	1	88	104	19.1224
)...))))).))))))	chr1:156721254-156721539(-)$1	1	122	138	17.5918
((.((((..(((.(((	chr11:2398561-2398877(+)$1	1	110	126	21.2653
...)))).))))))).	chr6:34212678-34212944(+)$1	1	211	227	19.9387
................	chr11:2160295-2160563(-)$1	1	189	205	19.0204
(.((((...)))).))	chr15:75230176-75230486(-)$1	1	215	231	20.0408
((.......)))))))	chr5:70883202-70883406(+)$1	1	92	108	17.1836
).))))...)).))))	chr6:37137955-37138229(+)$1	1	108	124	17.5918
((..(((((((.((((	chr1:109642970-109643202(+)$1	1	46	62	29.1224
))))).((((..((((	chrX:152953540-152953801(+)$1	1	101	117	22.4897
))).(((((((((.((	chr12:6875608-6875935(+)$1	1	64	80	20.4489
((.((.(((...((((	chr11:2160379-2160642(-)$1	1	51	67	18.0000
(.(((..(((((((((	chr11:810132-810381(+)$1	1	6	22	18.9183

#PSSM
C : 0.71	c : 0.16	G : 0.06	U : 0.04	A : 0.02	
C : 0.77	c : 0.16	U : 0.04	G : 0.02	
C : 0.71	G : 0.10	c : 0.08	g : 0.06	A : 0.02	u : 0.02	
A : 0.38	C : 0.22	U : 0.14	G : 0.12	c : 0.06	g : 0.04	a : 0.02	
G : 0.57	U : 0.14	C : 0.12	g : 0.10	A : 0.04	c : 0.02	
C : 0.75	c : 0.10	U : 0.08	g : 0.04	A : 0.02	
C : 0.75	c : 0.12	G : 0.06	g : 0.04	U : 0.02	
C : 0.67	c : 0.12	G : 0.08	U : 0.06	g : 0.04	A : 0.02	
C : 0.79	c : 0.12	G : 0.04	g : 0.04	
G : 0.59	C : 0.14	g : 0.10	U : 0.06	c : 0.04	A : 0.04	u : 0.02	
C : 0.77	c : 0.16	G : 0.04	A : 0.02	
C : 0.65	c : 0.14	G : 0.10	U : 0.08	g : 0.02	
A : 0.36	G : 0.24	C : 0.20	c : 0.10	a : 0.04	g : 0.02	U : 0.02	
G : 0.55	C : 0.18	g : 0.16	U : 0.06	A : 0.04	
G : 0.65	C : 0.14	g : 0.08	c : 0.08	U : 0.02	A : 0.02	
C : 0.77	c : 0.16	U : 0.04	G : 0.02	

#score	1018.1224489795924
#seq	49
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_UTR_m1_run1.nuc.txt

#NT
ugugugugugcacgugugugugugugugugugugugugugugugu	chr19:47278250-47278485(-)$1	235	125	170	112.2413
ugugugugugcgugcaugugugugugugugugugugugugugugu	chr17:36882462-36882717(+)$1	255	146	191	110.8620
UCugugugugugugugugugugugugugugugugugugugugugu	chr6:47592373-47592637(+)$1	264	40	85	119.2241
ugugugugugugugugugugugugugugugugugugugugugugu	chr16:14529575-14529888(-)$1	313	87	132	123.2758
ugugugugugugugugugugugugugugugugugugugugugugu	chr3:48597157-48597480(-)$1	323	97	142	123.2758
ugugugcguguguguaugugugcaugugugugugugugugugugu	chr1:31186081-31186416(-)$1	335	144	189	104.8275
ugugugcccgugugugugugugugugugugugugugugugugugu	chr9:139099055-139099364(-)$1	309	107	152	109.6551
ugugugugugcacgugugugugugugugugugugugugugugugu	chr19:47278165-47278372(-)$1	207	12	57	112.2413
UGGGAgugugugugagugugugugugugugugugugugugugugu	chr19:54024498-54024776(+)$1	278	72	117	110.4310
Ggugugugugugugugugugugugugugugugugugugugugugu	chr19:17397398-17397665(+)$1	267	57	102	119.7413
ugugugugugugugugugugugugugugugugugugugugugugu	chr19:11664191-11664508(-)$1	317	62	107	123.2758
ugugugugugugugugugugugugugugugugugugugugugugA	chr12:109994365-109994616(-)$1	251	119	164	120.3448
UAGCUCuguguguguguguguguguguguguguguguguguguAA	chr12:53806636-53806896(+)$1	260	72	117	98.8793
AGGguguguguguguguguguguguguguaugugcgugugcgugc	chr3:5025386-5025634(+)$1	248	125	170	100.0000
ugugugugugugugugugugugugugugugugugugugugugugu	chr16:14529688-14529945(-)$1	257	144	189	123.2758
ugugugugugugugugugugugugugugugugugugugugugugu	chr9:131570606-131570896(+)$1	290	82	127	123.2758
ugugugugugugugugugugugugugugugugugugugugugugC	chr22:26122812-26123082(+)$1	270	68	113	120.6034
ugugugugugugugugugugugugugugugugugugugugugugu	chr16:23478556-23478798(-)$1	242	43	88	123.2758
ugugugugugugugugugugugugugugugugugugugugugugu	chr2:135208260-135208588(+)$1	328	95	140	123.2758
ugugugugugugugugugugugugugugugugugugugugugugA	chr12:109994309-109994565(-)$1	256	68	113	120.3448
AGAGUUAgugugugugugugugugugugugugugugugugugugc	chr2:37072882-37073160(-)$1	278	58	103	104.1379
uguguguguguguguguguguguguguguguguguguguaugugu	chr19:34718539-34718806(+)$1	267	156	201	118.6206
ugugugugugcacgugugugugugugugugugugugugugugugu	chr19:47278228-47278450(-)$1	222	90	135	112.2413
ugugugugugcaugugugugugugugugugugugugugugugugu	chr7:92243935-92244193(-)$1	258	138	183	116.2068
uguguguguguguguguguguguguguguguguguacgcgcgugu	chr20:1165102-1165374(-)$1	272	74	119	105.3448
ugugugugggggugugugugugugugugugugugugugugugugu	chr1:67874921-67875206(-)$1	285	92	137	114.8275
uguguguguguguguguguguguguguguguaugugugugugugu	chr1:32372179-32372456(-)$1	277	69	114	118.4482
UUuguguguuuguguguguguguguguguguguguguguguguga	chr6:160526811-160527135(+)$1	324	116	161	111.8965
AGAgugugugugugugugugugugugugugugugugugugugugC	chr5:138207590-138207908(+)$1	318	123	168	113.2758
AGGguguguguguguguguguguguguguaugugcgugugcgugc	chr3:5025492-5025720(+)$1	228	19	64	100.0000
ugugugugugugugugugugugugugugugugugugugugugugc	chr19:47774827-47775044(+)$1	217	119	164	120.6034
uguguguggauguguguguguguguguguguguuuguguguaugu	chr5:176492747-176493046(+)$1	299	102	147	104.6551
ugugugugugugugugcgugcguguguguguguguguccgugugu	chr10:102308660-102308912(+)$1	252	141	186	104.5689
uguguguguguguguguguguguguguguguguguacgcgcgugu	chr20:1165207-1165450(-)$1	243	150	195	105.3448
ugugugugcgugcguguguguguguguaugugcguaugugugugu	chr22:21801883-21802152(+)$1	269	174	219	100.7758
ugugugugugugugugugugugugugugugugugugugugugugc	chr19:47774880-47775141(+)$1	261	66	111	120.6034
Aguguguauguguguguguguguguguguguguguguuugugugu	chr17:38175388-38175677(-)$1	289	212	257	110.5172
ugugugugugugugugugugugugugugugugugugugugugugc	chr19:47774844-47775080(+)$1	236	102	147	120.6034
GUGCugugugugugugugugugugugugugugugugugugugugg	chr22:20110119-20110364(+)$1	245	123	168	104.9137
CUAUugugugugugugugugugugugugugugugugugugugugG	chr22:39126914-39127205(+)$1	291	97	142	104.0517
ugugugugugugugugugugugugugugugugugugugugugugu	chr10:52514530-52514787(+)$1	257	122	167	123.2758
ugugugugugugugugugugugugugugugugugugugugugugu	chr10:52514587-52514855(+)$1	268	65	110	123.2758
Ggugggugugugugugugugugugugugugugugugugugugugu	chr6:31619979-31620250(-)$1	271	108	153	115.0862
UUuguguguguguguauguguguguguguguguguguguguguga	chr12:122459787-122460074(+)$1	287	33	78	112.3275
GUGCugugugugugugugugugugugugugugugugugugugugg	chr22:20110056-20110319(+)$1	263	186	231	104.9137
Ggugugugugugugugugugugugugugugugugugugugugugu	chr19:17397259-17397507(+)$1	248	196	241	119.7413
ugugugagagugugugugugugugugugugugugugugugugugu	chr21:45323782-45324055(+)$1	273	155	200	114.3103
UCGguguguguguguguguguguguguguguguguguguguAUUU	chr7:4810437-4810694(+)$1	257	55	100	106.2931
ugugugugugugugugugugugugugugugugugugugugugugu	chr16:23478598-23478820(-)$1	222	65	110	123.2758
ugugugugugcacgugugugugugugugugugugugugugugugu	chr19:47278136-47278365(-)$1	229	5	50	112.2413
ugugugugugugugugugugaguguguguguguguguuugugugc	chr3:51701938-51702199(+)$1	261	143	188	111.2931
UUuguguguguguguauguguguguguguguguguguguguguga	chr12:122459753-122459987(+)$1	234	67	112	112.3275
ugugugugugugugugugugugugugugugugugugugugugugu	chr5:126250401-126250658(-)$1	257	154	199	123.2758
AGUGAAUGUGCCugugugugugugugugugugugugugugugugu	chr10:73059711-73059978(+)$1	267	63	108	103.0172
ugugugugugcacgugugugugugugugugugugugugugugugu	chr19:47278190-47278428(-)$1	238	68	113	112.2413
uguguguguguguguguguguguguguguguguguguguaugugu	chr19:34718619-34718924(+)$1	305	76	121	118.6206
ugugugugugcaugugugugugugugugugugugugugugugugu	chr7:92243871-92244135(-)$1	264	80	125	116.2068

#otherMatches

#Struct PSSM
cc####ccc[dddd[bb[bb[dddd[dddd[a[ccc"""bb[a[b	chr5:96366223-96366515(+)$1	292	101	146	123.2758
G{BB:::::ddddoooooodddd::::::::::::::::::::cc	chr19:47278250-47278485(-)$1	235	125	170	112.2413
bb]bb::::hhhhhhhhoooooohhhhhhhh::::::::::::BB	chr17:36882462-36882717(+)$1	255	146	191	110.8620
b]gggggggIIIIIIIII{CCC{BB================mmmm	chr6:47592373-47592637(+)$1	264	40	85	119.2241
[bb"""dddd[bb[cccccc[a!!bb[aeeeee[dddd[bb[fff	chr16:14529575-14529888(-)$1	313	87	132	123.2758
nnnnnbb]a]ccc]a]ccc::::EEEEE{CCC{BBKKBBbb[a[e	chr3:48597157-48597480(-)$1	323	97	142	123.2758
:::::::::::==============^^^^^^^^^^^^^^^^^^==	chr1:31186081-31186416(-)$1	335	144	189	104.8275
3dddd]dddd333ccc]ffffff]ccc]cccccc[a$$$$$dddd	chr9:139099055-139099364(-)$1	309	107	152	109.6551
[bb####a[eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:47278165-47278372(-)$1	207	12	57	112.2413
KCCCKKCCC{CCC::::::::::::::bb[a[bb[bb[cccoooo	chr19:54024498-54024776(+)$1	278	72	117	110.4310
dd22ccc]ccc22eeeee::::::::::::::::A{CCC{A{A{C	chr19:17397398-17397665(+)$1	267	57	102	119.7413
oooooa22dddd:::::::::::::::::::::::::::::::::	chr19:11664191-11664508(-)$1	317	62	107	123.2758
:::::::::::::::::::::::::::::::::::::::::ccc[	chr12:109994365-109994616(-)$1	251	119	164	120.3448
::::JJJJJJJJJJ::::::::::::::::::::::::::ccc!!	chr12:53806636-53806896(+)$1	260	72	117	98.8793
FFFFF}A::::::::::::DDDD==========oooooo======	chr3:5025386-5025634(+)$1	248	125	170	100.0000
C:::::CCCLLLCCC{DDDD{BB{CCCdddd[dddd[bb[fffff	chr16:14529688-14529945(-)$1	257	144	189	123.2758
qa]dddd]bb:::::::::::::::::::::::::::::ccc[a[	chr9:131570606-131570896(+)$1	290	82	127	123.2758
ndddd]bb]ccc]bb]bb]ccc]dddda!!dddd[ddddmmmmdd	chr22:26122812-26123082(+)$1	270	68	113	120.6034
nnnnna]dddd]ccc:::::::eeeee$$$$$a[a[a[a[bbooo	chr16:23478556-23478798(-)$1	242	43	88	123.2758
gggg[a[bb!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:135208260-135208588(+)$1	328	95	140	123.2758
:::::::::::::::::::::::::::::::::::::::::ccc[	chr12:109994309-109994565(-)$1	256	68	113	120.3448
a[annnnna]a]a]a]a]a]a]eeeee]a==========mmmm==	chr2:37072882-37073160(-)$1	278	58	103	104.1379
d]ccc]ccc::::::::::::::::CCC}CCC?????DDDD}CCC	chr19:34718539-34718806(+)$1	267	156	201	118.6206
fffffmmmmffffff::::::::::::::::::::::::::::cc	chr19:47278228-47278450(-)$1	222	90	135	112.2413
dddoooooodddd666666ccc333bb22a]bb]bb]ccc22ddd	chr7:92243935-92244193(-)$1	258	138	183	116.2068
nnndddd]a]a::::::::ccc[ccc!!a[ccc[gggggggmmmm	chr20:1165102-1165374(-)$1	272	74	119	105.3448
fffdddd[ccc[ccc[eeeee"""a[dddd[a[bb++++++++++	chr1:67874921-67875206(-)$1	285	92	137	114.8275
ccc333eeeeeBBKKDDDD{EEEEEBB{GGGGGGG:iiiiiiiii	chr1:32372179-32372456(-)$1	277	69	114	118.4482
d22hhhhhhhh]ggggggg]bb]a]bb]bb333dddd22gggggg	chr6:160526811-160527135(+)$1	324	116	161	111.8965
CCC{CCCLLLEEEEEKKBBKKEEEEE:::::::ddddoooooodd	chr5:138207590-138207908(+)$1	318	123	168	113.2758
HHIIIIIIIII::::::::::::==========oooooo======	chr3:5025492-5025720(+)$1	228	19	64	100.0000
d[a[bb[============================qqqqqqqq==	chr19:47774827-47775044(+)$1	217	119	164	120.6034
2ccc333eeeee]a]ccc:bb[ccc"""ccceeeee[bb[ddddb	chr5:176492747-176493046(+)$1	299	102	147	104.6551
9999999eeeee]hhhhhhhh::::::::a!!bb[ccc[eeeee[	chr10:102308660-102308912(+)$1	252	141	186	104.5689
nnndddd]a]bb]a]ccc:::::::::::::bb[gggggggmmmm	chr20:1165207-1165450(-)$1	243	150	195	105.3448
==============ssssssssss==============]ccc===	chr22:21801883-21802152(+)$1	269	174	219	100.7758
]bb22a]ccc:============================mmmm==	chr19:47774880-47775141(+)$1	261	66	111	120.6034
nnnneeeee]bbBB}A}CCC}DDDD@@@@@@@@@@@@@@@@@@@@	chr17:38175388-38175677(-)$1	289	212	257	110.5172
d[a[bb[============================qqqqqqqq==	chr19:47774844-47775080(+)$1	236	102	147	120.6034
bb]dddd::::::::::::::::::::::::::BB}BB}DDDD}F	chr22:20110119-20110364(+)$1	245	123	168	104.9137
ccc22a]bb]bb]eeeee55555ggggggg]ccc]a]a55555dd	chr22:39126914-39127205(+)$1	291	97	142	104.0517
ddd####a!!dddd(((((((((ggggggg!!ccc''''''''gg	chr10:52514530-52514787(+)$1	257	122	167	123.2758
[bb!!dddd####a!!dddd(((((((((ggggggg!!ccc!!gg	chr10:52514587-52514855(+)$1	268	65	110	123.2758
=======[ccc!!bb"""ccc[eeeee[bbccc[a"""bb[ffff	chr6:31619979-31620250(-)$1	271	108	153	115.0862
nnnnnbb]bb]a]bb333ggggggg]bb]bb]bb]ffffff:CCC	chr12:122459787-122460074(+)$1	287	33	78	112.3275
=========:::::::::::A}GGGGGGG~~~~BB}CCC}EEEEE	chr22:20110056-20110319(+)$1	263	186	231	104.9137
dd22ccc]ccc22eeeee]a]bb::::::::::::::::::EEEE	chr19:17397259-17397507(+)$1	248	196	241	119.7413
:::GGGGGGG}BB}EEEEEZZZEEEEE}FFFFFF}AYYBB}A}A}	chr21:45323782-45324055(+)$1	273	155	200	114.3103
iiii::::::dddd"""ccc(((((((((a[dddd"""ddddsss	chr7:4810437-4810694(+)$1	257	55	100	106.2931
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^a]dddd]ccc66	chr16:23478598-23478820(-)$1	222	65	110	123.2758
gg[a[a[bb[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:47278136-47278365(-)$1	229	5	50	112.2413
:::::::::::=============[bbyyyyyyyyyyyyyyyybb	chr3:51701938-51702199(+)$1	261	143	188	111.2931
nnnnnbb]bb]a]bb333ggggggg]bb:::::::::::::::::	chr12:122459753-122459987(+)$1	234	67	112	112.3275
ggggg4444ccc4444dddda[eeeee[ccc[ccc[eeeee[a[c	chr5:126250401-126250658(-)$1	257	154	199	123.2758
qqqqqqbb]ccc333eeeee]ffffff]ccc==========mmmm	chr10:73059711-73059978(+)$1	267	63	108	103.0172
fffffmmmmffffff]a::::::::::::::::::::::::EEEE	chr19:47278190-47278428(-)$1	238	68	113	112.2413
d]ccc]ccc:::CCC{BB{ANNNNNDDDDLLLJJJJJJJJJJJJ{	chr19:34718619-34718924(+)$1	305	76	121	118.6206
:::::CCC{CCC{DDDD{CCC::::::::::::::::::::::::	chr7:92243871-92244135(-)$1	264	80	125	116.2068

#DB
((....(((.((((.((.((.((((.((((.(.(((...((.(.(	chr5:96366223-96366515(+)$1	1	101	146	123.2758
(.((.....((((......))))....................((	chr19:47278250-47278485(-)$1	1	125	170	112.2413
)).))....((((((((......))))))))............))	chr17:36882462-36882717(+)$1	1	146	191	110.8620
).)))))))(((((((((.(((.((((((((((((((((((....	chr6:47592373-47592637(+)$1	1	40	85	119.2241
.((...((((.((.((((((.(..((.((((((.((((.((.(((	chr16:14529575-14529888(-)$1	1	87	132	123.2758
.....)).).))).).)))....(((((.(((.((..((((.(.(	chr3:48597157-48597480(-)$1	1	97	142	123.2758
...........((((((((((((((..................))	chr1:31186081-31186416(-)$1	1	144	189	104.8275
.)))).))))...))).)))))).))).)))(((.(.....((((	chr9:139099055-139099364(-)$1	1	107	152	109.6551
.((....(.(((((...............................	chr19:47278165-47278372(-)$1	1	12	57	112.2413
.(((..(((.(((..............((.(.((.((.(((....	chr19:54024498-54024776(+)$1	1	72	117	110.4310
))..))).)))..)))))................(.(((.(.(.(	chr19:17397398-17397665(+)$1	1	57	102	119.7413
.....)..)))).................................	chr19:11664191-11664508(-)$1	1	62	107	123.2758
.........................................(((.	chr12:109994365-109994616(-)$1	1	119	164	120.3448
....((((((((((..........................(((..	chr12:53806636-53806896(+)$1	1	72	117	98.8793
))))).)............((((((((((((((......))))))	chr3:5025386-5025634(+)$1	1	125	170	100.0000
).....(((...(((.((((.((.(((((((.((((.((.(((((	chr16:14529688-14529945(-)$1	1	144	189	123.2758
.).)))).)).............................(((.(.	chr9:131570606-131570896(+)$1	1	82	127	123.2758
.)))).)).))).)).)).))).))))(..((((.((((....))	chr22:26122812-26123082(+)$1	1	68	113	120.6034
.....).)))).))).......(((((.....(.(.(.(.((...	chr16:23478556-23478798(-)$1	1	43	88	123.2758
((((.(.((..(((...............................	chr2:135208260-135208588(+)$1	1	95	140	123.2758
.........................................(((.	chr12:109994309-109994565(-)$1	1	68	113	120.3448
(.(.....).).).).).).).))))).)((((((((((....))	chr2:37072882-37073160(-)$1	1	58	103	104.1379
).))).)))................))).))).....)))).)))	chr19:34718539-34718806(+)$1	1	156	201	118.6206
(((((....))))))............................((	chr19:47278228-47278450(-)$1	1	90	135	112.2413
(((......))))......)))...))..).)).)).)))..)))	chr7:92243935-92244193(-)$1	1	138	183	116.2068
...)))).).)........(((.(((..(.(((.(((((((....	chr20:1165102-1165374(-)$1	1	74	119	105.3448
(((((((.(((.(((.(((((...(.((((.(.((..........	chr1:67874921-67875206(-)$1	1	92	137	114.8275
)))...)))))((..((((.(((((((.(((((((.(((((((((	chr1:32372179-32372456(-)$1	1	69	114	118.4482
)..)))))))).))))))).)).).)).))...))))..))))))	chr6:160526811-160527135(+)$1	1	116	161	111.8965
(((.(((...(((((..((..(((((.......((((......))	chr5:138207590-138207908(+)$1	1	123	168	113.2758
(((((((((((............((((((((((......))))))	chr3:5025492-5025720(+)$1	1	19	64	100.0000
(.(.((.((((((((((((((((((((((((((((........))	chr19:47774827-47775044(+)$1	1	119	164	120.6034
.)))...))))).).))).((.(((...((((((((.((.(((((	chr5:176492747-176493046(+)$1	1	102	147	104.6551
.......))))).))))))))........(..((.(((.(((((.	chr10:102308660-102308912(+)$1	1	141	186	104.5689
...)))).).)).).))).............((.(((((((....	chr20:1165207-1165450(-)$1	1	150	195	105.3448
((((((((((((((..........)))))))))))))).)))(((	chr22:21801883-21802152(+)$1	1	174	219	100.7758
.))..).))).((((((((((((((((((((((((((((....))	chr19:47774880-47775141(+)$1	1	66	111	120.6034
....))))).)))).).))).))))....................	chr17:38175388-38175677(-)$1	1	212	257	110.5172
(.(.((.((((((((((((((((((((((((((((........))	chr19:47774844-47775080(+)$1	1	102	147	120.6034
)).))))..........................)).)).)))).)	chr22:20110119-20110364(+)$1	1	123	168	104.9137
)))..).)).)).))))).....))))))).))).).).....))	chr22:39126914-39127205(+)$1	1	97	142	104.0517
(((....(..((((.........(((((((..(((........((	chr10:52514530-52514787(+)$1	1	122	167	123.2758
.((..((((....(..((((.........(((((((..(((..((	chr10:52514587-52514855(+)$1	1	65	110	123.2758
(((((((.(((..((...(((.(((((.(((((.(...((.((((	chr6:31619979-31620250(-)$1	1	108	153	115.0862
.....)).)).).))...))))))).)).)).)).)))))).(((	chr12:122459787-122460074(+)$1	1	33	78	112.3275
)))))))))...........).)))))))....)).))).)))))	chr22:20110056-20110319(+)$1	1	186	231	104.9137
))..))).)))..))))).).))..................))))	chr19:17397259-17397507(+)$1	1	196	241	119.7413
...))))))).)).)))))...))))).)))))).)..)).).).	chr21:45323782-45324055(+)$1	1	155	200	114.3103
))))......((((...(((.........(.((((...((((...	chr7:4810437-4810694(+)$1	1	55	100	106.2931
.................................).)))).)))..	chr16:23478598-23478820(-)$1	1	65	110	123.2758
((.(.(.((.((((...............................	chr19:47278136-47278365(-)$1	1	5	50	112.2413
...........(((((((((((((.((................))	chr3:51701938-51702199(+)$1	1	143	188	111.2931
.....)).)).).))...))))))).)).................	chr12:122459753-122459987(+)$1	1	67	112	112.3275
)))))....)))....))))(.(((((.(((.(((.(((((.(.(	chr5:126250401-126250658(-)$1	1	154	199	123.2758
......)).)))...))))).)))))).)))((((((((((....	chr10:73059711-73059978(+)$1	1	63	108	103.0172
(((((....)))))).)........................))))	chr19:47278190-47278428(-)$1	1	68	113	112.2413
).))).)))...(((.((.(.....((((...((((((((((((.	chr19:34718619-34718924(+)$1	1	76	121	118.6206
.....(((.(((.((((.(((........................	chr7:92243871-92244135(-)$1	1	80	125	116.2068

#PSSM
u : 0.67	U : 0.12	A : 0.10	G : 0.08	C : 0.01	
g : 0.74	G : 0.10	U : 0.10	C : 0.03	A : 0.01	
u : 0.81	G : 0.12	A : 0.05	U : 0.01	
g : 0.87	G : 0.05	C : 0.05	U : 0.01	
u : 0.91	A : 0.03	U : 0.03	g : 0.01	
g : 0.94	C : 0.01	U : 0.01	A : 0.01	
u : 0.91	c : 0.03	A : 0.01	a : 0.01	U : 0.01	
g : 0.94	c : 0.01	a : 0.01	G : 0.01	
u : 0.89	c : 0.03	g : 0.03	a : 0.01	U : 0.01	
g : 0.94	u : 0.01	a : 0.01	G : 0.01	
u : 0.82	c : 0.13	g : 0.01	C : 0.01	
g : 0.86	a : 0.12	C : 0.01	
u : 0.89	c : 0.10	
g : 1.00	
u : 0.96	c : 0.01	a : 0.01	
g : 0.93	a : 0.06	
u : 0.98	c : 0.01	
g : 1.00	
u : 1.00	
g : 1.00	
u : 0.96	c : 0.01	a : 0.01	
g : 1.00	
u : 0.98	c : 0.01	
g : 0.98	a : 0.01	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.98	a : 0.01	
u : 1.00	
g : 0.96	a : 0.03	
u : 1.00	
g : 0.98	a : 0.01	
u : 0.98	c : 0.01	
g : 0.98	u : 0.01	
u : 0.96	c : 0.03	
g : 0.94	a : 0.05	
u : 0.96	c : 0.03	
g : 0.94	u : 0.03	c : 0.01	
u : 0.94	c : 0.05	
g : 0.96	a : 0.03	
u : 0.93	c : 0.06	
g : 0.96	a : 0.01	A : 0.01	
u : 0.98	U : 0.01	
g : 0.96	A : 0.01	U : 0.01	
u : 0.67	c : 0.12	A : 0.05	a : 0.05	C : 0.03	g : 0.03	G : 0.01	U : 0.01	

#score	6608.965517241389
#seq	58
#width	45
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_transcript_m2_run2.nuc.txt

#NT
UUUUC	chr17:40632569-40632842(+)$1	273	62	67	15.0000
UUUUC	chr6:99848035-99848276(-)$1	241	71	76	15.0000
uuuuC	chr1:183481861-183482110(+)$1	249	98	103	15.0000
UUUUC	chr3:152173736-152174015(+)$1	279	71	76	15.0000
UUUUC	chr5:134116718-134116949(+)$1	231	223	228	15.0000
UUUUC	chr14:53569631-53569883(-)$1	252	31	36	15.0000
UUUUC	chr5:133725803-133726073(+)$1	270	28	33	15.0000
UUUUC	chr10:103571701-103571949(-)$1	248	22	27	15.0000
UUUUC	chr6:83891526-83891778(-)$1	252	98	103	15.0000
UUUUC	chr12:21665112-21665370(+)$1	258	42	47	15.0000
UUUUC	chr13:33096254-33096513(-)$1	259	242	247	15.0000
uuuuc	chr17:3727205-3727502(-)$1	297	62	67	15.0000
UUUUC	chr15:51770390-51770657(-)$1	267	38	43	15.0000
UUUUC	chr3:194170844-194171112(-)$1	268	52	57	15.0000
UUUUC	chr15:63967182-63967483(-)$1	301	12	17	15.0000
UUUUC	chr17:74731093-74731349(-)$1	256	96	101	15.0000
UUUUC	chr6:135306399-135306654(-)$1	255	11	16	15.0000
UUUUC	chr22:42262724-42262987(+)$1	263	27	32	15.0000
UUUUC	chr1:171560618-171560867(+)$1	249	78	83	15.0000
UUUUC	chr2:232323009-232323264(-)$1	255	87	92	15.0000
UUUUC	chr5:167922248-167922508(+)$1	260	83	88	15.0000
UUUUC	chr1:26799863-26800132(+)$1	269	27	32	15.0000
uuuuc	chr3:152881369-152881617(+)$1	248	68	73	15.0000
UUUUC	chr12:131361369-131361617(+)$1	248	19	24	15.0000
UUUUC	chr3:42671521-42671762(+)$1	241	124	129	15.0000
UUUUC	chr1:93804716-93804954(-)$1	238	18	23	15.0000
UUUUC	chr1:200587173-200587420(-)$1	247	166	171	15.0000
UUUUC	chr1:207943556-207943805(+)$1	249	8	13	15.0000
UUUUC	chr1:51912815-51913055(-)$1	240	87	92	15.0000
UUUUC	chr1:3807473-3807731(-)$1	258	98	103	15.0000
UUUUC	chr4:6825800-6826047(+)$1	247	40	45	15.0000
UUUUC	chr11:87006715-87006966(+)$1	251	32	37	15.0000
UUUUC	chr18:2750236-2750483(+)$1	247	18	23	15.0000
uuuuc	chr13:95860333-95860596(-)$1	263	47	52	15.0000
UUUUC	chr6:133100380-133100654(-)$1	274	37	42	15.0000
UUUUC	chr12:51394236-51394527(-)$1	291	133	138	15.0000
UUUUC	chr3:38539012-38539278(+)$1	266	12	17	15.0000
uuuuc	chr4:74043118-74043437(-)$1	319	93	98	15.0000
UUUUC	chrX:13334591-13334855(+)$1	264	71	76	15.0000
UUUUC	chr7:12412005-12412264(-)$1	259	95	100	15.0000
UUUUC	chr6:83896645-83896907(-)$1	262	91	96	15.0000
uuuuc	chr18:23663987-23664248(-)$1	261	90	95	15.0000
uuuuc	chr11:85346780-85347029(+)$1	249	54	59	15.0000
UUUUC	chr6:168323411-168323687(+)$1	276	91	96	15.0000
UUUUC	chr19:10915356-10915643(+)$1	287	107	112	15.0000
UUUUC	chr12:72007056-72007316(-)$1	260	23	28	15.0000
UUUUC	chr14:23794344-23794592(+)$1	248	3	8	15.0000
UUUUC	chr5:167922174-167922448(+)$1	274	157	162	15.0000
UUUUC	chr5:179048012-179048287(-)$1	275	214	219	15.0000
UUUUC	chr10:69832800-69833057(-)$1	257	74	79	15.0000
UUUUC	chr3:42672553-42672816(+)$1	263	6	11	15.0000
UUUUC	chr18:9104055-9104269(+)$1	214	39	44	15.0000
UUUUC	chr5:179049792-179050046(-)$1	254	2	7	15.0000
UUUUC	chr1:17735556-17735805(-)$1	249	9	14	15.0000
UUUUC	chr17:61876825-61877087(+)$1	262	115	120	15.0000
UUUUC	chr12:69643482-69643818(+)$1	336	70	75	15.0000
UUUUC	chr6:26138166-26138435(+)$1	269	43	48	15.0000
UUUUC	chr11:47843214-47843492(-)$1	278	19	24	15.0000
UUUUC	chr10:1038319-1038575(+)$1	256	93	98	15.0000
UUUUC	chr10:103552525-103552769(-)$1	244	55	60	15.0000
UUUUC	chr4:139101821-139102059(-)$1	238	72	77	15.0000
UUUUC	chr7:5752350-5752615(-)$1	265	68	73	15.0000
UUUUC	chr2:170425609-170425868(-)$1	259	214	219	15.0000
UUUUC	chr17:25634655-25634887(+)$1	232	81	86	15.0000
UUUUC	chr1:213061211-213061460(+)$1	249	209	214	15.0000
uuuuc	chr14:23795058-23795286(+)$1	228	123	128	15.0000

#otherMatches

#Struct PSSM
:::::	chr11:62430667-62430919(-)$1	252	34	39	15.0000
HHHHH	chr17:40632569-40632842(+)$1	273	62	67	15.0000
2ccc:	chr6:99848035-99848276(-)$1	241	71	76	15.0000
:::::	chr1:183481861-183482110(+)$1	249	98	103	15.0000
[bbmm	chr3:152173736-152174015(+)$1	279	71	76	15.0000
ggggg	chr5:134116718-134116949(+)$1	231	223	228	15.0000
i&&&&	chr14:53569631-53569883(-)$1	252	31	36	15.0000
ooooo	chr5:133725803-133726073(+)$1	270	28	33	15.0000
GGGLL	chr10:103571701-103571949(-)$1	248	22	27	15.0000
:::::	chr6:83891526-83891778(-)$1	252	98	103	15.0000
:::::	chr12:21665112-21665370(+)$1	258	42	47	15.0000
iiiii	chr13:33096254-33096513(-)$1	259	242	247	15.0000
]dddd	chr17:3727205-3727502(-)$1	297	62	67	15.0000
88888	chr15:51770390-51770657(-)$1	267	38	43	15.0000
:::::	chr3:194170844-194171112(-)$1	268	52	57	15.0000
qqqqq	chr15:63967182-63967483(-)$1	301	12	17	15.0000
HHHHH	chr17:74731093-74731349(-)$1	256	96	101	15.0000
:::::	chr6:135306399-135306654(-)$1	255	11	16	15.0000
=====	chr22:42262724-42262987(+)$1	263	27	32	15.0000
mmbbd	chr1:171560618-171560867(+)$1	249	78	83	15.0000
dd###	chr2:232323009-232323264(-)$1	255	87	92	15.0000
===%%	chr5:167922248-167922508(+)$1	260	83	88	15.0000
eeeee	chr1:26799863-26800132(+)$1	269	27	32	15.0000
=====	chr3:152881369-152881617(+)$1	248	68	73	15.0000
BOOOO	chr12:131361369-131361617(+)$1	248	19	24	15.0000
m====	chr3:42671521-42671762(+)$1	241	124	129	15.0000
JJJJJ	chr1:93804716-93804954(-)$1	238	18	23	15.0000
iiiii	chr1:200587173-200587420(-)$1	247	166	171	15.0000
eeebb	chr1:207943556-207943805(+)$1	249	8	13	15.0000
CNNNN	chr1:51912815-51913055(-)$1	240	87	92	15.0000
DDKKC	chr1:3807473-3807731(-)$1	258	98	103	15.0000
==ooo	chr4:6825800-6826047(+)$1	247	40	45	15.0000
::eee	chr11:87006715-87006966(+)$1	251	32	37	15.0000
IIIII	chr18:2750236-2750483(+)$1	247	18	23	15.0000
:::DD	chr13:95860333-95860596(-)$1	263	47	52	15.0000
EE:::	chr6:133100380-133100654(-)$1	274	37	42	15.0000
EE:dd	chr12:51394236-51394527(-)$1	291	133	138	15.0000
C::::	chr3:38539012-38539278(+)$1	266	12	17	15.0000
:::::	chr4:74043118-74043437(-)$1	319	93	98	15.0000
HHH:e	chrX:13334591-13334855(+)$1	264	71	76	15.0000
d0000	chr7:12412005-12412264(-)$1	259	95	100	15.0000
JJJJ:	chr6:83896645-83896907(-)$1	262	91	96	15.0000
:::::	chr18:23663987-23664248(-)$1	261	90	95	15.0000
HHHHH	chr11:85346780-85347029(+)$1	249	54	59	15.0000
GGGGG	chr6:168323411-168323687(+)$1	276	91	96	15.0000
GGGMM	chr19:10915356-10915643(+)$1	287	107	112	15.0000
:::::	chr12:72007056-72007316(-)$1	260	23	28	15.0000
HHHHH	chr14:23794344-23794592(+)$1	248	3	8	15.0000
===%%	chr5:167922174-167922448(+)$1	274	157	162	15.0000
]eeee	chr5:179048012-179048287(-)$1	275	214	219	15.0000
b]fff	chr10:69832800-69833057(-)$1	257	74	79	15.0000
GG{BB	chr3:42672553-42672816(+)$1	263	6	11	15.0000
GGGG:	chr18:9104055-9104269(+)$1	214	39	44	15.0000
:::ff	chr5:179049792-179050046(-)$1	254	2	7	15.0000
GGGGG	chr1:17735556-17735805(-)$1	249	9	14	15.0000
g!!ee	chr17:61876825-61877087(+)$1	262	115	120	15.0000
sssss	chr12:69643482-69643818(+)$1	336	70	75	15.0000
+++++	chr6:26138166-26138435(+)$1	269	43	48	15.0000
FFFFF	chr11:47843214-47843492(-)$1	278	19	24	15.0000
:::ee	chr10:1038319-1038575(+)$1	256	93	98	15.0000
:::::	chr10:103552525-103552769(-)$1	244	55	60	15.0000
!!ccc	chr4:139101821-139102059(-)$1	238	72	77	15.0000
ooooo	chr7:5752350-5752615(-)$1	265	68	73	15.0000
fffff	chr2:170425609-170425868(-)$1	259	214	219	15.0000
nnnnn	chr17:25634655-25634887(+)$1	232	81	86	15.0000
=====	chr1:213061211-213061460(+)$1	249	209	214	15.0000
99999	chr14:23795058-23795286(+)$1	228	123	128	15.0000

#DB
.....	chr11:62430667-62430919(-)$1	1	34	39	15.0000
(((((	chr17:40632569-40632842(+)$1	1	62	67	15.0000
.))).	chr6:99848035-99848276(-)$1	1	71	76	15.0000
.....	chr1:183481861-183482110(+)$1	1	98	103	15.0000
.((..	chr3:152173736-152174015(+)$1	1	71	76	15.0000
)))))	chr5:134116718-134116949(+)$1	1	223	228	15.0000
(....	chr14:53569631-53569883(-)$1	1	31	36	15.0000
.....	chr5:133725803-133726073(+)$1	1	28	33	15.0000
(((..	chr10:103571701-103571949(-)$1	1	22	27	15.0000
.....	chr6:83891526-83891778(-)$1	1	98	103	15.0000
.....	chr12:21665112-21665370(+)$1	1	42	47	15.0000
)))))	chr13:33096254-33096513(-)$1	1	242	247	15.0000
.))))	chr17:3727205-3727502(-)$1	1	62	67	15.0000
.....	chr15:51770390-51770657(-)$1	1	38	43	15.0000
.....	chr3:194170844-194171112(-)$1	1	52	57	15.0000
.....	chr15:63967182-63967483(-)$1	1	12	17	15.0000
(((((	chr17:74731093-74731349(-)$1	1	96	101	15.0000
.....	chr6:135306399-135306654(-)$1	1	11	16	15.0000
(((((	chr22:42262724-42262987(+)$1	1	27	32	15.0000
..)))	chr1:171560618-171560867(+)$1	1	78	83	15.0000
((...	chr2:232323009-232323264(-)$1	1	87	92	15.0000
(((..	chr5:167922248-167922508(+)$1	1	83	88	15.0000
(((((	chr1:26799863-26800132(+)$1	1	27	32	15.0000
)))))	chr3:152881369-152881617(+)$1	1	68	73	15.0000
(....	chr12:131361369-131361617(+)$1	1	19	24	15.0000
.))))	chr3:42671521-42671762(+)$1	1	124	129	15.0000
(((((	chr1:93804716-93804954(-)$1	1	18	23	15.0000
(((((	chr1:200587173-200587420(-)$1	1	166	171	15.0000
(((((	chr1:207943556-207943805(+)$1	1	8	13	15.0000
(....	chr1:51912815-51913055(-)$1	1	87	92	15.0000
((..(	chr1:3807473-3807731(-)$1	1	98	103	15.0000
((...	chr4:6825800-6826047(+)$1	1	40	45	15.0000
..(((	chr11:87006715-87006966(+)$1	1	32	37	15.0000
(((((	chr18:2750236-2750483(+)$1	1	18	23	15.0000
...((	chr13:95860333-95860596(-)$1	1	47	52	15.0000
((...	chr6:133100380-133100654(-)$1	1	37	42	15.0000
)).((	chr12:51394236-51394527(-)$1	1	133	138	15.0000
(....	chr3:38539012-38539278(+)$1	1	12	17	15.0000
.....	chr4:74043118-74043437(-)$1	1	93	98	15.0000
(((.(	chrX:13334591-13334855(+)$1	1	71	76	15.0000
)....	chr7:12412005-12412264(-)$1	1	95	100	15.0000
((((.	chr6:83896645-83896907(-)$1	1	91	96	15.0000
.....	chr18:23663987-23664248(-)$1	1	90	95	15.0000
(((((	chr11:85346780-85347029(+)$1	1	54	59	15.0000
(((((	chr6:168323411-168323687(+)$1	1	91	96	15.0000
(((..	chr19:10915356-10915643(+)$1	1	107	112	15.0000
.....	chr12:72007056-72007316(-)$1	1	23	28	15.0000
(((((	chr14:23794344-23794592(+)$1	1	3	8	15.0000
(((..	chr5:167922174-167922448(+)$1	1	157	162	15.0000
.))))	chr5:179048012-179048287(-)$1	1	214	219	15.0000
).)))	chr10:69832800-69833057(-)$1	1	74	79	15.0000
((.((	chr3:42672553-42672816(+)$1	1	6	11	15.0000
((((.	chr18:9104055-9104269(+)$1	1	39	44	15.0000
...((	chr5:179049792-179050046(-)$1	1	2	7	15.0000
(((((	chr1:17735556-17735805(-)$1	1	9	14	15.0000
(..((	chr17:61876825-61877087(+)$1	1	115	120	15.0000
.....	chr12:69643482-69643818(+)$1	1	70	75	15.0000
.....	chr6:26138166-26138435(+)$1	1	43	48	15.0000
(((((	chr11:47843214-47843492(-)$1	1	19	24	15.0000
...((	chr10:1038319-1038575(+)$1	1	93	98	15.0000
.....	chr10:103552525-103552769(-)$1	1	55	60	15.0000
..(((	chr4:139101821-139102059(-)$1	1	72	77	15.0000
.....	chr7:5752350-5752615(-)$1	1	68	73	15.0000
)))))	chr2:170425609-170425868(-)$1	1	214	219	15.0000
.....	chr17:25634655-25634887(+)$1	1	81	86	15.0000
)))))	chr1:213061211-213061460(+)$1	1	209	214	15.0000
.....	chr14:23795058-23795286(+)$1	1	123	128	15.0000

#PSSM
U : 0.88	u : 0.11	
U : 0.88	u : 0.11	
U : 0.88	u : 0.11	
U : 0.88	u : 0.11	
C : 0.89	c : 0.10	

#score	1005.0000000000001
#seq	67
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_UTR_m2_run1.nuc.txt

#NT
UUUG	chr7:150028498-150028734(+)$1	236	34	38	11.9999
uuuG	chr12:123779012-123779281(-)$1	269	97	101	11.9999
UUUG	chr17:48828668-48828916(+)$1	248	95	99	11.9999
UUUG	chr4:147110781-147111041(+)$1	260	89	93	11.9999
uuuG	chr15:52357854-52358120(+)$1	266	75	79	11.9999
UUUG	chr16:89712156-89712405(-)$1	249	10	14	11.9999
UUUG	chr5:137842084-137842337(-)$1	253	31	35	11.9999
UUUG	chr4:100869325-100869579(-)$1	254	60	64	11.9999
UUUG	chr19:6441058-6441310(-)$1	252	77	81	11.9999
UUUG	chr1:33146019-33146245(+)$1	226	55	59	11.9999
UUUG	chr10:75881905-75882185(-)$1	280	53	57	11.9999
UUUG	chr17:61671282-61671532(+)$1	250	16	20	11.9999
UUUG	chr5:167975776-167976047(-)$1	271	56	60	11.9999
UUUG	chr1:154931032-154931288(-)$1	256	94	98	11.9999
UUUG	chr10:70863995-70864218(+)$1	223	97	101	11.9999
UUUG	chr1:23636636-23636863(-)$1	227	20	24	11.9999
uuug	chr19:47569257-47569530(-)$1	273	41	45	11.9999
UUUG	chr4:80827485-80827774(-)$1	289	75	79	11.9999
UUUG	chr2:85549621-85549878(-)$1	257	86	90	11.9999
UUUG	chr19:13054858-13055095(+)$1	237	4	8	11.9999
UUUG	chrX:70280188-70280436(-)$1	248	16	20	11.9999
UUUG	chr13:113977484-113977743(+)$1	259	82	86	11.9999
UUUG	chr21:15857710-15857955(-)$1	245	5	9	11.9999
UUUG	chr10:102120854-102121079(+)$1	225	135	139	11.9999
UUUG	chrX:102930508-102930769(-)$1	261	76	80	11.9999
UUUG	chr14:35498415-35498644(+)$1	229	13	17	11.9999
UUUG	chr10:35858120-35858363(+)$1	243	26	30	11.9999
UUUG	chr6:18225712-18225946(-)$1	234	32	36	11.9999
UUUG	chr1:163325349-163325605(+)$1	256	146	150	11.9999
UUUG	chr8:11696118-11696334(+)$1	216	7	11	11.9999
UUUG	chr9:86584107-86584326(-)$1	219	156	160	11.9999
UUUG	chr5:14693451-14693704(+)$1	253	4	8	11.9999
UUUG	chr1:32373882-32374111(-)$1	229	25	29	11.9999
UUUG	chr1:45976777-45977019(-)$1	242	187	191	11.9999
UUUG	chr3:128211872-128212116(+)$1	244	41	45	11.9999
UUUG	chr17:56082452-56082675(-)$1	223	77	81	11.9999
UUUG	chr11:66394329-66394561(+)$1	232	117	121	11.9999
UUUG	chr17:48828725-48828954(+)$1	229	38	42	11.9999
UUUG	chr4:71847757-71847966(+)$1	209	77	81	11.9999
UUUG	chr7:73609918-73610165(+)$1	247	50	54	11.9999
UUUG	chr4:174252767-174253013(-)$1	246	94	98	11.9999
UUUG	chr5:10679312-10679568(-)$1	256	149	153	11.9999
UUUG	chrX:123042364-123042647(+)$1	283	115	119	11.9999
UUUG	chr7:139107366-139107578(+)$1	212	26	30	11.9999
UUUG	chr1:1327789-1328097(-)$1	308	118	122	11.9999
UUUG	chr9:123942503-123942747(-)$1	244	10	14	11.9999
UUUG	chr5:167975938-167976180(-)$1	242	189	193	11.9999
UUUG	chr15:52842833-52843055(-)$1	222	29	33	11.9999
UUUG	chr18:56995036-56995286(-)$1	250	139	143	11.9999
UUUG	chr1:203823043-203823287(+)$1	244	12	16	11.9999
UUUG	chr2:47129506-47129786(-)$1	280	19	23	11.9999
UUUG	chr7:27565034-27565297(-)$1	263	5	9	11.9999
UUUG	chr22:39910614-39910866(+)$1	252	12	16	11.9999
UUUG	chr18:57571315-57571608(+)$1	293	150	154	11.9999
UUUG	chr8:102211211-102211444(-)$1	233	160	164	11.9999
UUUG	chr14:50361281-50361508(+)$1	227	31	35	11.9999
UUUG	chr7:135612195-135612408(-)$1	213	76	80	11.9999
UUUG	chr3:41281404-41281674(+)$1	270	51	55	11.9999
UUUG	chr10:74035340-74035549(+)$1	209	34	38	11.9999
UUUG	chr7:27565487-27565739(-)$1	252	14	18	11.9999
UUUG	chr2:87002379-87002683(+)$1	304	32	36	11.9999
UUUG	chr8:126011430-126011684(+)$1	254	140	144	11.9999
UUUG	chr12:49086198-49086425(-)$1	227	101	105	11.9999
UUUG	chr19:2321429-2321662(-)$1	233	95	99	11.9999
UUUG	chr1:193054754-193054992(+)$1	238	112	116	11.9999
UUUG	chr1:27730768-27730997(-)$1	229	127	131	11.9999
UUUG	chr2:30482709-30482956(+)$1	247	93	97	11.9999
UUUG	chr1:41236753-41237037(+)$1	284	74	78	11.9999
UUUG	chrX:70794592-70794860(+)$1	268	98	102	11.9999
UUUG	chr16:88766868-88767111(-)$1	243	91	95	11.9999
UUUG	chr19:48885870-48886088(-)$1	218	91	95	11.9999
UUUG	chr21:34930874-34931142(+)$1	268	46	50	11.9999
UUUG	chr3:41281707-41281930(+)$1	223	39	43	11.9999
UUUG	chr7:150070934-150071184(+)$1	250	181	185	11.9999
UUUG	chr5:96371085-96371314(+)$1	229	47	51	11.9999
UUUG	chr12:49413440-49413681(-)$1	241	33	37	11.9999
UUUG	chr8:124221551-124221798(+)$1	247	162	166	11.9999
UUUG	chr19:39874193-39874419(+)$1	226	117	121	11.9999
UUUG	chr6:31785553-31785806(+)$1	253	13	17	11.9999
UUUG	chr8:26267990-26268253(+)$1	263	2	6	11.9999
UUUG	chr1:112003701-112003971(+)$1	270	42	46	11.9999
UUUG	chr9:140476573-140476828(-)$1	255	75	79	11.9999
UUUG	chr7:106800055-106800323(+)$1	268	40	44	11.9999
UUUG	chr3:113440334-113440609(-)$1	275	188	192	11.9999

#otherMatches

#Struct PSSM
qqqq	chrX:18258243-18258489(-)$1	246	108	112	11.9999
nnnc	chr7:150028498-150028734(+)$1	236	34	38	11.9999
hhhh	chr12:123779012-123779281(-)$1	269	97	101	11.9999
22bb	chr17:48828668-48828916(+)$1	248	95	99	11.9999
]ddd	chr4:147110781-147111041(+)$1	260	89	93	11.9999
22dd	chr15:52357854-52358120(+)$1	266	75	79	11.9999
FF{A	chr16:89712156-89712405(-)$1	249	10	14	11.9999
"eee	chr5:137842084-137842337(-)$1	253	31	35	11.9999
GLLL	chr4:100869325-100869579(-)$1	254	60	64	11.9999
FFFF	chr19:6441058-6441310(-)$1	252	77	81	11.9999
::::	chr1:33146019-33146245(+)$1	226	55	59	11.9999
::BB	chr10:75881905-75882185(-)$1	280	53	57	11.9999
LHHH	chr17:61671282-61671532(+)$1	250	16	20	11.9999
2fff	chr5:167975776-167976047(-)$1	271	56	60	11.9999
66bb	chr1:154931032-154931288(-)$1	256	94	98	11.9999
:eee	chr10:70863995-70864218(+)$1	223	97	101	11.9999
LLBB	chr1:23636636-23636863(-)$1	227	20	24	11.9999
::FF	chr19:47569257-47569530(-)$1	273	41	45	11.9999
gppp	chr4:80827485-80827774(-)$1	289	75	79	11.9999
DDDK	chr2:85549621-85549878(-)$1	257	86	90	11.9999
xxxx	chr19:13054858-13055095(+)$1	237	4	8	11.9999
::GG	chrX:70280188-70280436(-)$1	248	16	20	11.9999
=333	chr13:113977484-113977743(+)$1	259	82	86	11.9999
ffff	chr21:15857710-15857955(-)$1	245	5	9	11.9999
qqqq	chr10:102120854-102121079(+)$1	225	135	139	11.9999
gg::	chrX:102930508-102930769(-)$1	261	76	80	11.9999
FFFF	chr14:35498415-35498644(+)$1	229	13	17	11.9999
FFFF	chr10:35858120-35858363(+)$1	243	26	30	11.9999
gg[b	chr6:18225712-18225946(-)$1	234	32	36	11.9999
^^^e	chr1:163325349-163325605(+)$1	256	146	150	11.9999
NNNC	chr8:11696118-11696334(+)$1	216	7	11	11.9999
"""e	chr9:86584107-86584326(-)$1	219	156	160	11.9999
hhhh	chr5:14693451-14693704(+)$1	253	4	8	11.9999
B{EE	chr1:32373882-32374111(-)$1	229	25	29	11.9999
eee]	chr1:45976777-45977019(-)$1	242	187	191	11.9999
:::e	chr3:128211872-128212116(+)$1	244	41	45	11.9999
e[ee	chr17:56082452-56082675(-)$1	223	77	81	11.9999
!ccc	chr11:66394329-66394561(+)$1	232	117	121	11.9999
^^^c	chr17:48828725-48828954(+)$1	229	38	42	11.9999
7777	chr4:71847757-71847966(+)$1	209	77	81	11.9999
====	chr7:73609918-73610165(+)$1	247	50	54	11.9999
!!bb	chr4:174252767-174253013(-)$1	246	94	98	11.9999
ggg'	chr5:10679312-10679568(-)$1	256	149	153	11.9999
ggg:	chrX:123042364-123042647(+)$1	283	115	119	11.9999
::::	chr7:139107366-139107578(+)$1	212	26	30	11.9999
c]ee	chr1:1327789-1328097(-)$1	308	118	122	11.9999
::::	chr9:123942503-123942747(-)$1	244	10	14	11.9999
2fff	chr5:167975938-167976180(-)$1	242	189	193	11.9999
d!!d	chr15:52842833-52843055(-)$1	222	29	33	11.9999
bb[g	chr18:56995036-56995286(-)$1	250	139	143	11.9999
iiii	chr1:203823043-203823287(+)$1	244	12	16	11.9999
gggg	chr2:47129506-47129786(-)$1	280	19	23	11.9999
HHHH	chr7:27565034-27565297(-)$1	263	5	9	11.9999
HH{B	chr22:39910614-39910866(+)$1	252	12	16	11.9999
:::d	chr18:57571315-57571608(+)$1	293	150	154	11.9999
gggs	chr8:102211211-102211444(-)$1	233	160	164	11.9999
NNNE	chr14:50361281-50361508(+)$1	227	31	35	11.9999
]fff	chr7:135612195-135612408(-)$1	213	76	80	11.9999
KEEE	chr3:41281404-41281674(+)$1	270	51	55	11.9999
III{	chr10:74035340-74035549(+)$1	209	34	38	11.9999
IIII	chr7:27565487-27565739(-)$1	252	14	18	11.9999
ccco	chr2:87002379-87002683(+)$1	304	32	36	11.9999
###a	chr8:126011430-126011684(+)$1	254	140	144	11.9999
!===	chr12:49086198-49086425(-)$1	227	101	105	11.9999
::::	chr19:2321429-2321662(-)$1	233	95	99	11.9999
dddd	chr1:193054754-193054992(+)$1	238	112	116	11.9999
xxxx	chr1:27730768-27730997(-)$1	229	127	131	11.9999
OOOO	chr2:30482709-30482956(+)$1	247	93	97	11.9999
^^^^	chr1:41236753-41237037(+)$1	284	74	78	11.9999
CCLL	chrX:70794592-70794860(+)$1	268	98	102	11.9999
$$$c	chr16:88766868-88767111(-)$1	243	91	95	11.9999
a22f	chr19:48885870-48886088(-)$1	218	91	95	11.9999
====	chr21:34930874-34931142(+)$1	268	46	50	11.9999
fffm	chr3:41281707-41281930(+)$1	223	39	43	11.9999
hhhh	chr7:150070934-150071184(+)$1	250	181	185	11.9999
:::d	chr5:96371085-96371314(+)$1	229	47	51	11.9999
ggg]	chr12:49413440-49413681(-)$1	241	33	37	11.9999
eeee	chr8:124221551-124221798(+)$1	247	162	166	11.9999
mmmc	chr19:39874193-39874419(+)$1	226	117	121	11.9999
&&&&	chr6:31785553-31785806(+)$1	253	13	17	11.9999
:eee	chr8:26267990-26268253(+)$1	263	2	6	11.9999
JJJJ	chr1:112003701-112003971(+)$1	270	42	46	11.9999
:eee	chr9:140476573-140476828(-)$1	255	75	79	11.9999
gggg	chr7:106800055-106800323(+)$1	268	40	44	11.9999
mmbb	chr3:113440334-113440609(-)$1	275	188	192	11.9999

#DB
....	chrX:18258243-18258489(-)$1	1	108	112	11.9999
...)	chr7:150028498-150028734(+)$1	1	34	38	11.9999
((((	chr12:123779012-123779281(-)$1	1	97	101	11.9999
..))	chr17:48828668-48828916(+)$1	1	95	99	11.9999
.)))	chr4:147110781-147111041(+)$1	1	89	93	11.9999
..))	chr15:52357854-52358120(+)$1	1	75	79	11.9999
((.(	chr16:89712156-89712405(-)$1	1	10	14	11.9999
.(((	chr5:137842084-137842337(-)$1	1	31	35	11.9999
(...	chr4:100869325-100869579(-)$1	1	60	64	11.9999
((((	chr19:6441058-6441310(-)$1	1	77	81	11.9999
....	chr1:33146019-33146245(+)$1	1	55	59	11.9999
..((	chr10:75881905-75882185(-)$1	1	53	57	11.9999
.(((	chr17:61671282-61671532(+)$1	1	16	20	11.9999
.)))	chr5:167975776-167976047(-)$1	1	56	60	11.9999
..))	chr1:154931032-154931288(-)$1	1	94	98	11.9999
.(((	chr10:70863995-70864218(+)$1	1	97	101	11.9999
..((	chr1:23636636-23636863(-)$1	1	20	24	11.9999
..((	chr19:47569257-47569530(-)$1	1	41	45	11.9999
(...	chr4:80827485-80827774(-)$1	1	75	79	11.9999
(((.	chr2:85549621-85549878(-)$1	1	86	90	11.9999
....	chr19:13054858-13055095(+)$1	1	4	8	11.9999
..((	chrX:70280188-70280436(-)$1	1	16	20	11.9999
)...	chr13:113977484-113977743(+)$1	1	82	86	11.9999
((((	chr21:15857710-15857955(-)$1	1	5	9	11.9999
....	chr10:102120854-102121079(+)$1	1	135	139	11.9999
))..	chrX:102930508-102930769(-)$1	1	76	80	11.9999
((((	chr14:35498415-35498644(+)$1	1	13	17	11.9999
((((	chr10:35858120-35858363(+)$1	1	26	30	11.9999
((.(	chr6:18225712-18225946(-)$1	1	32	36	11.9999
...)	chr1:163325349-163325605(+)$1	1	146	150	11.9999
...(	chr8:11696118-11696334(+)$1	1	7	11	11.9999
...(	chr9:86584107-86584326(-)$1	1	156	160	11.9999
((((	chr5:14693451-14693704(+)$1	1	4	8	11.9999
(.((	chr1:32373882-32374111(-)$1	1	25	29	11.9999
))).	chr1:45976777-45977019(-)$1	1	187	191	11.9999
...(	chr3:128211872-128212116(+)$1	1	41	45	11.9999
(.((	chr17:56082452-56082675(-)$1	1	77	81	11.9999
.(((	chr11:66394329-66394561(+)$1	1	117	121	11.9999
...)	chr17:48828725-48828954(+)$1	1	38	42	11.9999
....	chr4:71847757-71847966(+)$1	1	77	81	11.9999
((((	chr7:73609918-73610165(+)$1	1	50	54	11.9999
..((	chr4:174252767-174253013(-)$1	1	94	98	11.9999
(((.	chr5:10679312-10679568(-)$1	1	149	153	11.9999
))).	chrX:123042364-123042647(+)$1	1	115	119	11.9999
....	chr7:139107366-139107578(+)$1	1	26	30	11.9999
).))	chr1:1327789-1328097(-)$1	1	118	122	11.9999
....	chr9:123942503-123942747(-)$1	1	10	14	11.9999
.)))	chr5:167975938-167976180(-)$1	1	189	193	11.9999
(..(	chr15:52842833-52843055(-)$1	1	29	33	11.9999
((.(	chr18:56995036-56995286(-)$1	1	139	143	11.9999
((((	chr1:203823043-203823287(+)$1	1	12	16	11.9999
((((	chr2:47129506-47129786(-)$1	1	19	23	11.9999
((((	chr7:27565034-27565297(-)$1	1	5	9	11.9999
((.(	chr22:39910614-39910866(+)$1	1	12	16	11.9999
...(	chr18:57571315-57571608(+)$1	1	150	154	11.9999
(((.	chr8:102211211-102211444(-)$1	1	160	164	11.9999
...(	chr14:50361281-50361508(+)$1	1	31	35	11.9999
.)))	chr7:135612195-135612408(-)$1	1	76	80	11.9999
.(((	chr3:41281404-41281674(+)$1	1	51	55	11.9999
(((.	chr10:74035340-74035549(+)$1	1	34	38	11.9999
((((	chr7:27565487-27565739(-)$1	1	14	18	11.9999
(((.	chr2:87002379-87002683(+)$1	1	32	36	11.9999
...(	chr8:126011430-126011684(+)$1	1	140	144	11.9999
.(((	chr12:49086198-49086425(-)$1	1	101	105	11.9999
....	chr19:2321429-2321662(-)$1	1	95	99	11.9999
((((	chr1:193054754-193054992(+)$1	1	112	116	11.9999
....	chr1:27730768-27730997(-)$1	1	127	131	11.9999
....	chr2:30482709-30482956(+)$1	1	93	97	11.9999
....	chr1:41236753-41237037(+)$1	1	74	78	11.9999
((..	chrX:70794592-70794860(+)$1	1	98	102	11.9999
...(	chr16:88766868-88767111(-)$1	1	91	95	11.9999
)..)	chr19:48885870-48886088(-)$1	1	91	95	11.9999
))))	chr21:34930874-34931142(+)$1	1	46	50	11.9999
(((.	chr3:41281707-41281930(+)$1	1	39	43	11.9999
))))	chr7:150070934-150071184(+)$1	1	181	185	11.9999
...(	chr5:96371085-96371314(+)$1	1	47	51	11.9999
))).	chr12:49413440-49413681(-)$1	1	33	37	11.9999
)))(	chr8:124221551-124221798(+)$1	1	162	166	11.9999
...)	chr19:39874193-39874419(+)$1	1	117	121	11.9999
....	chr6:31785553-31785806(+)$1	1	13	17	11.9999
.(((	chr8:26267990-26268253(+)$1	1	2	6	11.9999
((((	chr1:112003701-112003971(+)$1	1	42	46	11.9999
.(((	chr9:140476573-140476828(-)$1	1	75	79	11.9999
((((	chr7:106800055-106800323(+)$1	1	40	44	11.9999
..))	chr3:113440334-113440609(-)$1	1	188	192	11.9999

#PSSM
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	
G : 0.98	g : 0.01	

#score	1019.9999999999998
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_UTR_m1_run2.nuc.txt

#NT
UUUUUUGU	chr22:36906836-36907079(-)$1	243	15	23	15.9999
UUUUUUUU	chr5:43705384-43705681(+)$1	297	84	92	20.6428
UUUUUUUU	chr10:126086210-126086460(-)$1	250	60	68	20.6428
UUUUUUUU	chr17:73132002-73132292(-)$1	290	222	230	20.6428
UUUUUGUU	chr2:177202399-177202679(+)$1	280	210	218	16.0714
UUUUAUUU	chr19:10800232-10800512(+)$1	280	178	186	16.9285
CUUUUUUU	chr7:106800001-106800268(+)$1	267	137	145	16.0714
AUUUUUUU	chr2:85876116-85876393(+)$1	277	11	19	16.2142
UUUUUUUU	chr22:39079830-39080070(+)$1	240	90	98	20.6428
UGUUUUUU	chr3:156260625-156260866(-)$1	241	30	38	16.2857
UUUUUUUU	chrX:22012649-22012870(+)$1	221	0	8	20.6428
uuuauuuu	chr14:35786484-35786735(+)$1	251	230	238	16.4285
UAUUUUUU	chr18:19209041-19209293(+)$1	252	95	103	16.2142
UUUUUUCU	chr1:33145261-33145513(+)$1	252	79	87	15.9999
UUUGUUUU	chr3:142775302-142775572(+)$1	270	29	37	16.4999
UUUUUUUU	chr16:75327583-75327832(-)$1	249	91	99	20.6428
UUUUUUUU	chr17:79477058-79477294(-)$1	236	166	174	20.6428
UUUUUUUU	chr12:104341555-104341779(+)$1	224	47	55	20.6428
UUUUAUUU	chr12:54864934-54865161(-)$1	227	58	66	16.9285
UUUUAUUU	chr6:8079826-8080101(-)$1	275	128	136	16.9285
AUUUUUUU	chr20:47730050-47730375(-)$1	325	315	323	16.2142
UUUUUUUU	chr20:60709240-60709548(+)$1	308	290	298	20.6428
AUUUUUUU	chr15:85212947-85213200(-)$1	253	212	220	16.2142
UUUGUUUU	chr10:74035327-74035573(+)$1	246	90	98	16.4999
UUUUUAUU	chrX:40465677-40465954(+)$1	277	52	60	16.0714
UUUUCUUU	chr2:74442185-74442467(+)$1	282	185	193	16.9285
UUAUUUUU	chr3:128888410-128888646(-)$1	236	81	89	16.1428
UUUUGUUU	chr7:42956924-42957178(-)$1	254	71	79	17.0714
uuuuguuu	chr15:76508573-76508824(-)$1	251	239	247	17.0714
UUUUUUUU	chr11:65622241-65622548(-)$1	307	28	36	20.6428
UCUUUUUU	chr7:54825114-54825385(-)$1	271	79	87	16.1428
UUGUUUUU	chr5:134670392-134670614(-)$1	222	99	107	16.2857
UUUAUUUU	chr12:120936025-120936261(+)$1	236	189	197	16.4285
uuuuuuuu	chr10:75135578-75135854(-)$1	276	8	16	20.6428
UUUUUUAU	chr19:10244016-10244270(-)$1	254	139	147	16.0714
UUCUUUUU	chr1:186282906-186283188(-)$1	282	12	20	16.2142
UUUUUUUU	chr1:17735330-17735588(-)$1	258	200	208	20.6428
UUUUUUUU	chr3:179333669-179333938(+)$1	269	84	92	20.6428
UUGUUUUU	chr20:35869758-35870003(+)$1	245	99	107	16.2857
UUUUUUUU	chr3:128996365-128996627(+)$1	262	29	37	20.6428
UUUUAUUU	chr2:118588398-118588657(+)$1	259	67	75	16.9285
UUUCUUUU	chr1:226334054-226334316(-)$1	262	66	74	16.2857
UGUUUUUU	chr15:35148715-35148969(-)$1	254	32	40	16.2857
UUUUGUUU	chr21:34896828-34897075(-)$1	247	134	142	17.0714
UUCUUUUU	chr7:158523674-158523956(-)$1	282	53	61	16.2142
UUUUUUUU	chr6:52128836-52129067(-)$1	231	47	55	20.6428
UAUUUUUU	chr10:70706378-70706668(+)$1	290	131	139	16.2142
UUUAUUUU	chr2:198351558-198351836(-)$1	278	268	276	16.4285
UUUUGUUU	chr12:98994865-98995090(+)$1	225	37	45	17.0714
UUUGUUUU	chr1:203839054-203839274(+)$1	220	46	54	16.4999
uuuuuuuu	chr2:232319387-232319626(-)$1	239	35	43	20.6428
UGUUUUUU	chr3:150260362-150260607(-)$1	245	95	103	16.2857
UUGUUUUU	chr4:103717109-103717384(-)$1	275	252	260	16.2857
UUUUUUUU	chr19:34891177-34891416(+)$1	239	77	85	20.6428
UUUUUUAU	chr19:10244070-10244318(-)$1	248	187	195	16.0714
UUUUCUUU	chr11:122929844-122930070(-)$1	226	59	67	16.9285
GUUUUUUU	chr10:73576964-73577196(-)$1	232	38	46	16.0714
UUUUGUUU	chr16:70605731-70605976(+)$1	245	23	31	17.0714
UUUUUUUU	chr1:153634434-153634678(-)$1	244	125	133	20.6428
UUUUUUUU	chr6:75949972-75950201(-)$1	229	76	84	20.6428
UUUUUAUU	chr6:49572885-49573140(-)$1	255	90	98	16.0714
UUUUUUUU	chr14:69847017-69847268(-)$1	251	210	218	20.6428
UUUUCUUU	chr2:44115413-44115666(-)$1	253	19	27	16.9285
UUUGUUUU	chr13:29252132-29252376(+)$1	244	18	26	16.4999
UUUUUUUU	chr12:54678556-54678821(+)$1	265	29	37	20.6428
UUUUUGUU	chr11:32623820-32624068(+)$1	248	141	149	16.0714
UUUUCUUU	chr6:114261940-114262166(-)$1	226	4	12	16.9285
UUUUUUUU	chr22:20114629-20114920(+)$1	291	88	96	20.6428
UUUUGUUU	chr8:87570838-87571072(+)$1	234	82	90	17.0714

#otherMatches

#Struct PSSM
wwwwwwww	chr11:114320641-114320908(+)$1	267	108	116	20.6428
::::dddd	chr22:36906836-36907079(-)$1	243	15	23	15.9999
eeeooooo	chr5:43705384-43705681(+)$1	297	84	92	20.6428
EEEMMMMI	chr10:126086210-126086460(-)$1	250	60	68	20.6428
ggggg::f	chr17:73132002-73132292(-)$1	290	222	230	20.6428
::::ffff	chr2:177202399-177202679(+)$1	280	210	218	16.0714
lggggggg	chr19:10800232-10800512(+)$1	280	178	186	16.9285
DZZZDDDD	chr7:106800001-106800268(+)$1	267	137	145	16.0714
PPPPPPPF	chr2:85876116-85876393(+)$1	277	11	19	16.2142
JJJJJJJ:	chr22:39079830-39080070(+)$1	240	90	98	20.6428
:::::JJJ	chr3:156260625-156260866(-)$1	241	30	38	16.2857
::::::::	chrX:22012649-22012870(+)$1	221	0	8	20.6428
nnnnnfff	chr14:35786484-35786735(+)$1	251	230	238	16.4285
eee$$$$$	chr18:19209041-19209293(+)$1	252	95	103	16.2142
EEEYYEEE	chr1:33145261-33145513(+)$1	252	79	87	15.9999
dd[ddddp	chr3:142775302-142775572(+)$1	270	29	37	16.4999
::::::::	chr16:75327583-75327832(-)$1	249	91	99	20.6428
:::::eee	chr17:79477058-79477294(-)$1	236	166	174	20.6428
ggg%%%%%	chr12:104341555-104341779(+)$1	224	47	55	20.6428
HHKKAKKC	chr12:54864934-54865161(-)$1	227	58	66	16.9285
deeeee22	chr6:8079826-8080101(-)$1	275	128	136	16.9285
::::::::	chr20:47730050-47730375(-)$1	325	315	323	16.2142
???HHHHH	chr20:60709240-60709548(+)$1	308	290	298	20.6428
::::::::	chr15:85212947-85213200(-)$1	253	212	220	16.2142
++gggggg	chr10:74035327-74035573(+)$1	246	90	98	16.4999
lffffffc	chrX:40465677-40465954(+)$1	277	52	60	16.0714
EEZZZCCC	chr2:74442185-74442467(+)$1	282	185	193	16.9285
bbhhhhhh	chr3:128888410-128888646(-)$1	236	81	89	16.1428
heeeeell	chr7:42956924-42957178(-)$1	254	71	79	17.0714
dddd]ddd	chr15:76508573-76508824(-)$1	251	239	247	17.0714
::::::::	chr11:65622241-65622548(-)$1	307	28	36	20.6428
bb:::::D	chr7:54825114-54825385(-)$1	271	79	87	16.1428
oooooodd	chr5:134670392-134670614(-)$1	222	99	107	16.2857
^^^^^^^^	chr12:120936025-120936261(+)$1	236	189	197	16.4285
!!iiiiii	chr10:75135578-75135854(-)$1	276	8	16	20.6428
lleeeee2	chr19:10244016-10244270(-)$1	254	139	147	16.0714
:=======	chr1:186282906-186283188(-)$1	282	12	20	16.2142
^^^^^^^^	chr1:17735330-17735588(-)$1	258	200	208	20.6428
yyyyyyyy	chr3:179333669-179333938(+)$1	269	84	92	20.6428
hhhhhhhh	chr20:35869758-35870003(+)$1	245	99	107	16.2857
tttttttt	chr3:128996365-128996627(+)$1	262	29	37	20.6428
uuuuuuuu	chr2:118588398-118588657(+)$1	259	67	75	16.9285
eeeee::d	chr1:226334054-226334316(-)$1	262	66	74	16.2857
^^^^^^^^	chr15:35148715-35148969(-)$1	254	32	40	16.2857
##eeeee!	chr21:34896828-34897075(-)$1	247	134	142	17.0714
::::::::	chr7:158523674-158523956(-)$1	282	53	61	16.2142
========	chr6:52128836-52129067(-)$1	231	47	55	20.6428
hhhhhhhl	chr10:70706378-70706668(+)$1	290	131	139	16.2142
GGGGGGG:	chr2:198351558-198351836(-)$1	278	268	276	16.4285
33hhhhhh	chr12:98994865-98995090(+)$1	225	37	45	17.0714
eeeemmmm	chr1:203839054-203839274(+)$1	220	46	54	16.4999
EEEE{III	chr2:232319387-232319626(-)$1	239	35	43	20.6428
gbb333dd	chr3:150260362-150260607(-)$1	245	95	103	16.2857
ddd]iiii	chr4:103717109-103717384(-)$1	275	252	260	16.2857
d7777777	chr19:34891177-34891416(+)$1	239	77	85	20.6428
lleeeee2	chr19:10244070-10244318(-)$1	248	187	195	16.0714
eepppppp	chr11:122929844-122930070(-)$1	226	59	67	16.9285
ccqqqqqq	chr10:73576964-73577196(-)$1	232	38	46	16.0714
fffff[bb	chr16:70605731-70605976(+)$1	245	23	31	17.0714
ooooooff	chr1:153634434-153634678(-)$1	244	125	133	20.6428
dd"""ccc	chr6:75949972-75950201(-)$1	229	76	84	20.6428
c!!fffff	chr6:49572885-49573140(-)$1	255	90	98	16.0714
C:::::::	chr14:69847017-69847268(-)$1	251	210	218	20.6428
:::bb!!g	chr2:44115413-44115666(-)$1	253	19	27	16.9285
mmmeeeee	chr13:29252132-29252376(+)$1	244	18	26	16.4999
DNNNNNEE	chr12:54678556-54678821(+)$1	265	29	37	20.6428
g[ccc"""	chr11:32623820-32624068(+)$1	248	141	149	16.0714
fffffnnn	chr6:114261940-114262166(-)$1	226	4	12	16.9285
22ccc]hh	chr22:20114629-20114920(+)$1	291	88	96	20.6428
ffff!!bb	chr8:87570838-87571072(+)$1	234	82	90	17.0714

#DB
........	chr11:114320641-114320908(+)$1	1	108	116	20.6428
....((((	chr22:36906836-36907079(-)$1	1	15	23	15.9999
(((.....	chr5:43705384-43705681(+)$1	1	84	92	20.6428
(((....(	chr10:126086210-126086460(-)$1	1	60	68	20.6428
)))))..(	chr17:73132002-73132292(-)$1	1	222	230	20.6428
....((((	chr2:177202399-177202679(+)$1	1	210	218	16.0714
.)))))))	chr19:10800232-10800512(+)$1	1	178	186	16.9285
)...))))	chr7:106800001-106800268(+)$1	1	137	145	16.0714
.......(	chr2:85876116-85876393(+)$1	1	11	19	16.2142
))))))).	chr22:39079830-39080070(+)$1	1	90	98	20.6428
.....(((	chr3:156260625-156260866(-)$1	1	30	38	16.2857
........	chrX:22012649-22012870(+)$1	1	0	8	20.6428
.....)))	chr14:35786484-35786735(+)$1	1	230	238	16.4285
(((.....	chr18:19209041-19209293(+)$1	1	95	103	16.2142
)))..)))	chr1:33145261-33145513(+)$1	1	79	87	15.9999
((.((((.	chr3:142775302-142775572(+)$1	1	29	37	16.4999
........	chr16:75327583-75327832(-)$1	1	91	99	20.6428
.....(((	chr17:79477058-79477294(-)$1	1	166	174	20.6428
(((.....	chr12:104341555-104341779(+)$1	1	47	55	20.6428
((..(..(	chr12:54864934-54865161(-)$1	1	58	66	16.9285
))))))..	chr6:8079826-8080101(-)$1	1	128	136	16.9285
........	chr20:47730050-47730375(-)$1	1	315	323	16.2142
...)))))	chr20:60709240-60709548(+)$1	1	290	298	20.6428
........	chr15:85212947-85213200(-)$1	1	212	220	16.2142
..((((((	chr10:74035327-74035573(+)$1	1	90	98	16.4999
.)))))))	chrX:40465677-40465954(+)$1	1	52	60	16.0714
))...)))	chr2:74442185-74442467(+)$1	1	185	193	16.9285
))))))))	chr3:128888410-128888646(-)$1	1	81	89	16.1428
((((((..	chr7:42956924-42957178(-)$1	1	71	79	17.0714
)))).)))	chr15:76508573-76508824(-)$1	1	239	247	17.0714
........	chr11:65622241-65622548(-)$1	1	28	36	20.6428
)).....(	chr7:54825114-54825385(-)$1	1	79	87	16.1428
......))	chr5:134670392-134670614(-)$1	1	99	107	16.2857
........	chr12:120936025-120936261(+)$1	1	189	197	16.4285
..((((((	chr10:75135578-75135854(-)$1	1	8	16	20.6428
..))))).	chr19:10244016-10244270(-)$1	1	139	147	16.0714
.(((((((	chr1:186282906-186283188(-)$1	1	12	20	16.2142
........	chr1:17735330-17735588(-)$1	1	200	208	20.6428
........	chr3:179333669-179333938(+)$1	1	84	92	20.6428
))))))))	chr20:35869758-35870003(+)$1	1	99	107	16.2857
........	chr3:128996365-128996627(+)$1	1	29	37	20.6428
........	chr2:118588398-118588657(+)$1	1	67	75	16.9285
)))))..(	chr1:226334054-226334316(-)$1	1	66	74	16.2857
........	chr15:35148715-35148969(-)$1	1	32	40	16.2857
..(((((.	chr21:34896828-34897075(-)$1	1	134	142	17.0714
........	chr7:158523674-158523956(-)$1	1	53	61	16.2142
((((((((	chr6:52128836-52129067(-)$1	1	47	55	20.6428
(((((((.	chr10:70706378-70706668(+)$1	1	131	139	16.2142
))))))).	chr2:198351558-198351836(-)$1	1	268	276	16.4285
..))))))	chr12:98994865-98995090(+)$1	1	37	45	17.0714
((((....	chr1:203839054-203839274(+)$1	1	46	54	16.4999
((((.(((	chr2:232319387-232319626(-)$1	1	35	43	20.6428
)))...))	chr3:150260362-150260607(-)$1	1	95	103	16.2857
))).))))	chr4:103717109-103717384(-)$1	1	252	260	16.2857
).......	chr19:34891177-34891416(+)$1	1	77	85	20.6428
..))))).	chr19:10244070-10244318(-)$1	1	187	195	16.0714
((......	chr11:122929844-122930070(-)$1	1	59	67	16.9285
((......	chr10:73576964-73577196(-)$1	1	38	46	16.0714
(((((.((	chr16:70605731-70605976(+)$1	1	23	31	17.0714
......))	chr1:153634434-153634678(-)$1	1	125	133	20.6428
((...(((	chr6:75949972-75950201(-)$1	1	76	84	20.6428
(..(((((	chr6:49572885-49573140(-)$1	1	90	98	16.0714
).......	chr14:69847017-69847268(-)$1	1	210	218	20.6428
...((..(	chr2:44115413-44115666(-)$1	1	19	27	16.9285
...)))))	chr13:29252132-29252376(+)$1	1	18	26	16.4999
(.....((	chr12:54678556-54678821(+)$1	1	29	37	20.6428
(.(((...	chr11:32623820-32624068(+)$1	1	141	149	16.0714
(((((...	chr6:114261940-114262166(-)$1	1	4	12	16.9285
..))).))	chr22:20114629-20114920(+)$1	1	88	96	20.6428
((((..((	chr8:87570838-87571072(+)$1	1	82	90	17.0714

#PSSM
U : 0.87	u : 0.05	A : 0.04	C : 0.01	G : 0.01	
U : 0.85	u : 0.05	G : 0.04	A : 0.02	C : 0.01	
U : 0.85	u : 0.05	G : 0.04	C : 0.02	A : 0.01	
U : 0.84	G : 0.05	u : 0.04	A : 0.02	a : 0.01	C : 0.01	
U : 0.75	G : 0.07	A : 0.05	C : 0.05	u : 0.04	g : 0.01	
U : 0.88	u : 0.05	G : 0.02	A : 0.02	
U : 0.88	u : 0.05	A : 0.02	G : 0.01	C : 0.01	
U : 0.94	u : 0.05	

#score	1248.2857142857117
#seq	70
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_transcript_m2_run1.nuc.txt

#NT
CCAGG	chr16:74678224-74678496(-)$1	272	54	59	14.9999
CCAGG	chr8:132980550-132980863(+)$1	313	14	19	14.9999
CCAGG	chr18:47812197-47812456(-)$1	259	61	66	14.9999
CCAGG	chr1:161479790-161480094(+)$1	304	266	271	14.9999
CCAGG	chr8:23425847-23426130(+)$1	283	60	65	14.9999
CCAGG	chr2:171806136-171806465(+)$1	329	43	48	14.9999
CCAGG	chr19:59059943-59060192(+)$1	249	12	17	14.9999
CCAGG	chr3:9482316-9482616(+)$1	300	116	121	14.9999
CCAGG	chr19:7712319-7712573(+)$1	254	42	47	14.9999
CCAGG	chr8:144894220-144894470(-)$1	250	218	223	14.9999
CCAGG	chr16:2086811-2087100(+)$1	289	83	88	14.9999
CCAGG	chr5:68470191-68470432(+)$1	241	73	78	14.9999
CCAGG	chr2:74734165-74734432(-)$1	267	18	23	14.9999
CCAGG	chr19:13050594-13050844(+)$1	250	187	192	14.9999
CCAGG	chr3:12956430-12956681(-)$1	251	157	162	14.9999
CCAGG	chr5:137518109-137518362(+)$1	253	161	166	14.9999
CCAGG	chr17:79663707-79663935(+)$1	228	66	71	14.9999
CCAGG	chr1:33138380-33138665(+)$1	285	229	234	14.9999
CCAGG	chrX:48339528-48339785(+)$1	257	178	183	14.9999
CCAGG	chr22:50686619-50686876(-)$1	257	122	127	14.9999
CCAGG	chr16:67915408-67915670(+)$1	262	24	29	14.9999
CCAGG	chr11:65305639-65305929(+)$1	290	10	15	14.9999
CCAGG	chr16:89871497-89871818(-)$1	321	113	118	14.9999
CCAGG	chr17:27438534-27438837(-)$1	303	25	30	14.9999
CCAGG	chr2:131878361-131878677(+)$1	316	9	14	14.9999
CCAGG	chr12:133147071-133147320(+)$1	249	39	44	14.9999
CCAGG	chr17:79660942-79661240(+)$1	298	222	227	14.9999
CCAGG	chr20:60906359-60906672(-)$1	313	145	150	14.9999
CCAGG	chr16:28845919-28846153(+)$1	234	47	52	14.9999
CCAGG	chr19:42721530-42721850(-)$1	320	40	45	14.9999
CCAGG	chr11:62444783-62445050(-)$1	267	15	20	14.9999
CCAGG	chr3:49050525-49050778(+)$1	253	5	10	14.9999
CCAGG	chr3:184082774-184083072(+)$1	298	236	241	14.9999
CCAGG	chr19:39963888-39964161(+)$1	273	74	79	14.9999
CCAGG	chr7:100228286-100228591(-)$1	305	76	81	14.9999
CCAGG	chr22:20106602-20106877(+)$1	275	134	139	14.9999
ccagg	chr17:40821061-40821316(-)$1	255	43	48	14.9999
CCAGG	chr19:34857694-34857955(+)$1	261	0	5	14.9999
CCAGG	chr11:62651853-62652117(+)$1	264	116	121	14.9999
CCAGG	chr8:144657403-144657643(-)$1	240	92	97	14.9999
CCAGG	chr2:183821973-183822236(-)$1	263	8	13	14.9999
CCAGG	chr17:7127528-7127785(+)$1	257	52	57	14.9999
CCAGG	chr4:68410849-68411121(-)$1	272	86	91	14.9999
CCAGG	chr19:3203760-3204091(+)$1	331	38	43	14.9999
CCAGG	chr11:66133211-66133481(-)$1	270	84	89	14.9999
CCAGG	chr7:100482391-100482638(+)$1	247	241	246	14.9999
CCAGG	chr21:46909302-46909606(+)$1	304	164	169	14.9999
CCAGG	chr19:10220986-10221275(+)$1	289	48	53	14.9999
CCAGG	chr6:42977127-42977390(+)$1	263	134	139	14.9999
ccagg	chr14:50300865-50301124(-)$1	259	153	158	14.9999
CCAGG	chr6:31607946-31608200(-)$1	254	113	118	14.9999
CCAGG	chr1:43896699-43896987(+)$1	288	273	278	14.9999
CCAGG	chr12:48184864-48185117(-)$1	253	86	91	14.9999

#otherMatches

#Struct PSSM
E{EEE	chr2:27651526-27651834(+)$1	308	80	85	14.9999
bb[cc	chr16:74678224-74678496(-)$1	272	54	59	14.9999
BBa[c	chr8:132980550-132980863(+)$1	313	14	19	14.9999
:eeee	chr18:47812197-47812456(-)$1	259	61	66	14.9999
FF@@@	chr1:161479790-161480094(+)$1	304	266	271	14.9999
eennn	chr8:23425847-23426130(+)$1	283	60	65	14.9999
ccc]b	chr2:171806136-171806465(+)$1	329	43	48	14.9999
fffff	chr19:59059943-59060192(+)$1	249	12	17	14.9999
ddppp	chr3:9482316-9482616(+)$1	300	116	121	14.9999
FFFFF	chr19:7712319-7712573(+)$1	254	42	47	14.9999
ffqqq	chr8:144894220-144894470(-)$1	250	218	223	14.9999
!!eee	chr16:2086811-2087100(+)$1	289	83	88	14.9999
ooocc	chr5:68470191-68470432(+)$1	241	73	78	14.9999
ee:cc	chr2:74734165-74734432(-)$1	267	18	23	14.9999
ca]ee	chr19:13050594-13050844(+)$1	250	187	192	14.9999
###ee	chr3:12956430-12956681(-)$1	251	157	162	14.9999
mmmdd	chr5:137518109-137518362(+)$1	253	161	166	14.9999
SSSFF	chr17:79663707-79663935(+)$1	228	66	71	14.9999
8iiii	chr1:33138380-33138665(+)$1	285	229	234	14.9999
c:HHH	chrX:48339528-48339785(+)$1	257	178	183	14.9999
###bb	chr22:50686619-50686876(-)$1	257	122	127	14.9999
hhhhh	chr16:67915408-67915670(+)$1	262	24	29	14.9999
c"""b	chr11:65305639-65305929(+)$1	290	10	15	14.9999
CCC{G	chr16:89871497-89871818(-)$1	321	113	118	14.9999
GGGBB	chr17:27438534-27438837(-)$1	303	25	30	14.9999
ddnnn	chr2:131878361-131878677(+)$1	316	9	14	14.9999
eeeee	chr12:133147071-133147320(+)$1	249	39	44	14.9999
e333b	chr17:79660942-79661240(+)$1	298	222	227	14.9999
JJJJJ	chr20:60906359-60906672(-)$1	313	145	150	14.9999
JJJJJ	chr16:28845919-28846153(+)$1	234	47	52	14.9999
f[ccc	chr19:42721530-42721850(-)$1	320	40	45	14.9999
ooodd	chr11:62444783-62445050(-)$1	267	15	20	14.9999
eeeee	chr3:49050525-49050778(+)$1	253	5	10	14.9999
ennnn	chr3:184082774-184083072(+)$1	298	236	241	14.9999
nnnbb	chr19:39963888-39964161(+)$1	273	74	79	14.9999
ddd$$	chr7:100228286-100228591(-)$1	305	76	81	14.9999
dd333	chr22:20106602-20106877(+)$1	275	134	139	14.9999
dd[dd	chr17:40821061-40821316(-)$1	255	43	48	14.9999
::FFF	chr19:34857694-34857955(+)$1	261	0	5	14.9999
ddd]c	chr11:62651853-62652117(+)$1	264	116	121	14.9999
]eeee	chr8:144657403-144657643(-)$1	240	92	97	14.9999
:EEEE	chr2:183821973-183822236(-)$1	263	8	13	14.9999
EEEEg	chr17:7127528-7127785(+)$1	257	52	57	14.9999
gggg[	chr4:68410849-68411121(-)$1	272	86	91	14.9999
dddd[	chr19:3203760-3204091(+)$1	331	38	43	14.9999
cccmm	chr11:66133211-66133481(-)$1	270	84	89	14.9999
bb]bb	chr7:100482391-100482638(+)$1	247	241	246	14.9999
B{FFF	chr21:46909302-46909606(+)$1	304	164	169	14.9999
CFFFF	chr19:10220986-10221275(+)$1	289	48	53	14.9999
BDDDD	chr6:42977127-42977390(+)$1	263	134	139	14.9999
ddddn	chr14:50300865-50301124(-)$1	259	153	158	14.9999
mmeee	chr6:31607946-31608200(-)$1	254	113	118	14.9999
FFFFF	chr1:43896699-43896987(+)$1	288	273	278	14.9999
ee:dd	chr12:48184864-48185117(-)$1	253	86	91	14.9999

#DB
(.(((	chr2:27651526-27651834(+)$1	1	80	85	14.9999
((.((	chr16:74678224-74678496(-)$1	1	54	59	14.9999
(((.(	chr8:132980550-132980863(+)$1	1	14	19	14.9999
.((((	chr18:47812197-47812456(-)$1	1	61	66	14.9999
))...	chr1:161479790-161480094(+)$1	1	266	271	14.9999
((...	chr8:23425847-23426130(+)$1	1	60	65	14.9999
))).)	chr2:171806136-171806465(+)$1	1	43	48	14.9999
)))))	chr19:59059943-59060192(+)$1	1	12	17	14.9999
((...	chr3:9482316-9482616(+)$1	1	116	121	14.9999
(((((	chr19:7712319-7712573(+)$1	1	42	47	14.9999
((...	chr8:144894220-144894470(-)$1	1	218	223	14.9999
..(((	chr16:2086811-2087100(+)$1	1	83	88	14.9999
...))	chr5:68470191-68470432(+)$1	1	73	78	14.9999
)).((	chr2:74734165-74734432(-)$1	1	18	23	14.9999
)).))	chr19:13050594-13050844(+)$1	1	187	192	14.9999
...((	chr3:12956430-12956681(-)$1	1	157	162	14.9999
...))	chr5:137518109-137518362(+)$1	1	161	166	14.9999
...((	chr17:79663707-79663935(+)$1	1	66	71	14.9999
.))))	chr1:33138380-33138665(+)$1	1	229	234	14.9999
).)))	chrX:48339528-48339785(+)$1	1	178	183	14.9999
...((	chr22:50686619-50686876(-)$1	1	122	127	14.9999
(((((	chr16:67915408-67915670(+)$1	1	24	29	14.9999
(...(	chr11:65305639-65305929(+)$1	1	10	15	14.9999
(((.(	chr16:89871497-89871818(-)$1	1	113	118	14.9999
(((((	chr17:27438534-27438837(-)$1	1	25	30	14.9999
((...	chr2:131878361-131878677(+)$1	1	9	14	14.9999
)))))	chr12:133147071-133147320(+)$1	1	39	44	14.9999
)...)	chr17:79660942-79661240(+)$1	1	222	227	14.9999
(((((	chr20:60906359-60906672(-)$1	1	145	150	14.9999
(((((	chr16:28845919-28846153(+)$1	1	47	52	14.9999
(.(((	chr19:42721530-42721850(-)$1	1	40	45	14.9999
...))	chr11:62444783-62445050(-)$1	1	15	20	14.9999
(((((	chr3:49050525-49050778(+)$1	1	5	10	14.9999
(....	chr3:184082774-184083072(+)$1	1	236	241	14.9999
...))	chr19:39963888-39964161(+)$1	1	74	79	14.9999
(((..	chr7:100228286-100228591(-)$1	1	76	81	14.9999
))...	chr22:20106602-20106877(+)$1	1	134	139	14.9999
((.((	chr17:40821061-40821316(-)$1	1	43	48	14.9999
..(((	chr19:34857694-34857955(+)$1	1	0	5	14.9999
))).)	chr11:62651853-62652117(+)$1	1	116	121	14.9999
.))))	chr8:144657403-144657643(-)$1	1	92	97	14.9999
.((((	chr2:183821973-183822236(-)$1	1	8	13	14.9999
(((((	chr17:7127528-7127785(+)$1	1	52	57	14.9999
((((.	chr4:68410849-68411121(-)$1	1	86	91	14.9999
((((.	chr19:3203760-3204091(+)$1	1	38	43	14.9999
(((..	chr11:66133211-66133481(-)$1	1	84	89	14.9999
)).))	chr7:100482391-100482638(+)$1	1	241	246	14.9999
(.(((	chr21:46909302-46909606(+)$1	1	164	169	14.9999
(((((	chr19:10220986-10221275(+)$1	1	48	53	14.9999
(((((	chr6:42977127-42977390(+)$1	1	134	139	14.9999
((((.	chr14:50300865-50301124(-)$1	1	153	158	14.9999
..)))	chr6:31607946-31608200(-)$1	1	113	118	14.9999
)))))	chr1:43896699-43896987(+)$1	1	273	278	14.9999
)).((	chr12:48184864-48185117(-)$1	1	86	91	14.9999

#PSSM
C : 0.96	c : 0.03	
C : 0.96	c : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	809.9999999999995
#seq	54
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_transcript_m3_run2.nuc.txt

#NT
aaccugu	chr19:45981798-45982021(-)$1	223	114	121	9.9090
aggcugg	chr1:151175393-151175644(+)$1	251	60	67	9.9090
AGCCUUU	chr7:149286068-149286300(-)$1	232	179	186	8.9090
ggccugg	chr10:43492990-43493201(+)$1	211	43	50	11.0000
acccuga	chr6:76735915-76736142(-)$1	227	24	31	10.5454
AGCCUGC	chr19:45981757-45981971(-)$1	214	187	194	13.4545
agccuca	chr6:31958179-31958383(+)$1	204	113	120	9.3636
AGCCUGU	chrM:1177-1382(+)$1	205	25	32	13.0000
AGCCAGG	chr1:45187452-45187665(-)$1	213	67	74	10.0909
AACCUGU	chr5:140090800-140091031(+)$1	231	111	118	9.9090
GGCCUGA	chr11:75115118-75115352(+)$1	234	57	64	10.2727
AGCCAGG	chr1:45187465-45187674(-)$1	209	76	83	10.0909
AACCUGC	chr10:128256276-128256488(-)$1	212	17	24	10.3636
AGCCAGG	chr20:36027093-36027357(+)$1	264	4	11	10.0909
AUCCUGG	chr1:227087882-227088095(+)$1	213	14	21	11.3636
ACCCUGA	chrM:12176-12380(+)$1	204	191	198	10.5454
UGCCUGA	chr11:75115614-75115831(+)$1	217	173	180	9.9090
AUCCUGG	chr10:64573513-64573723(-)$1	210	2	9	11.3636
ACCCUGA	chrM:12180-12398(+)$1	218	187	194	10.5454
AGCCUGC	chr10:81074843-81075127(+)$1	284	141	148	13.4545
AGCCUUU	chr7:149286059-149286268(-)$1	209	147	154	8.9090
AUCCUGA	chr15:45492508-45492745(-)$1	237	192	199	10.6363
AACCUGU	chr5:140090781-140090996(+)$1	215	130	137	9.9090
AGCCUGA	chrX:16185913-16186162(-)$1	249	134	141	13.6363
ggccugc	chr1:90390444-90390734(+)$1	290	19	26	10.0909
AGCCUUG	chr21:42006116-42006339(-)$1	223	8	15	10.2727
AGCCUCG	chr10:79793520-79793765(+)$1	245	13	20	10.0909
GGCCUGG	chr12:133451183-133451460(-)$1	277	11	18	11.0000
AGCCUGG	chr17:33430286-33430572(-)$1	286	116	123	14.3636
UGCCUGG	chr1:4771981-4772204(+)$1	223	20	27	10.6363
AUCCUGG	chr1:227087874-227088080(+)$1	206	22	29	11.3636
UGCCUGG	chr5:180692567-180692776(+)$1	209	0	7	10.6363
ggccugc	chr1:90390387-90390644(+)$1	257	76	83	10.0909
GGCCUGG	chr20:36026940-36027238(+)$1	298	79	86	11.0000
AGCCUGC	chr11:72414344-72414560(-)$1	216	1	8	13.4545
CGCCUGG	chr4:39459954-39460161(-)$1	207	4	11	10.4545
AGCCUGA	chr17:26919458-26919700(-)$1	242	96	103	13.6363
AGCCUGU	chrM:1162-1377(+)$1	215	40	47	13.0000
AGGCUGG	chr1:569796-570078(-)$1	282	6	13	9.9090
AGCCUGA	chrX:16185900-16186113(-)$1	213	85	92	13.6363
ACCCUGG	chr9:138901415-138901662(-)$1	247	85	92	11.2727
aggcugg	chr10:18934731-18934984(-)$1	253	52	59	9.9090
AACCUGC	chr10:128256268-128256476(-)$1	208	5	12	10.3636
ggccugg	chr10:43492980-43493190(+)$1	210	53	60	11.0000
agccagg	chr17:73029931-73030188(+)$1	257	106	113	10.0909
AGCCUUA	chr4:39460410-39460632(-)$1	222	18	25	9.5454
AUCCUGC	chr16:18801528-18801755(-)$1	227	175	182	10.4545
AGCCUGA	chrX:16185864-16186100(-)$1	236	72	79	13.6363
ACCCUGC	chr17:8125488-8125719(-)$1	231	23	30	10.3636
AGCCUGC	chr19:45981775-45981998(-)$1	223	214	221	13.4545
AGCCUGA	chr19:14280678-14280944(-)$1	266	170	177	13.6363
AGCCUGC	chr11:9481795-9482048(-)$1	253	139	146	13.4545
AGCCUGC	chr19:45981771-45981975(-)$1	204	191	198	13.4545
AUCCUGG	chr10:64573524-64573735(-)$1	211	14	21	11.3636

#otherMatches

#Struct PSSM
mmcccgg	chr17:26919409-26919658(-)$1	249	54	61	13.6363
ppfffff	chr19:45981798-45982021(-)$1	223	114	121	9.9090
fff!!cc	chr1:151175393-151175644(+)$1	251	60	67	9.9090
!!hhhhh	chr7:149286068-149286300(-)$1	232	179	186	8.9090
eeeehhh	chr10:43492990-43493201(+)$1	211	43	50	11.0000
dddd:::	chr6:76735915-76736142(-)$1	227	24	31	10.5454
ffppppp	chr19:45981757-45981971(-)$1	214	187	194	13.4545
JJJ::::	chr6:31958179-31958383(+)$1	204	113	120	9.3636
eeedddd	chrM:1177-1382(+)$1	205	25	32	13.0000
ddddqqq	chr1:45187452-45187665(-)$1	213	67	74	10.0909
hhhhhmm	chr5:140090800-140091031(+)$1	231	111	118	9.9090
DDDD{CC	chr11:75115118-75115352(+)$1	234	57	64	10.2727
iiiiiii	chr1:45187465-45187674(-)$1	209	76	83	10.0909
qqqqccc	chr10:128256276-128256488(-)$1	212	17	24	10.3636
GGGGGG:	chr20:36027093-36027357(+)$1	264	4	11	10.0909
EELLLEE	chr1:227087882-227088095(+)$1	213	14	21	11.3636
:::CCC:	chrM:12176-12380(+)$1	204	191	198	10.5454
GG:::::	chr11:75115614-75115831(+)$1	217	173	180	9.9090
::::ddd	chr10:64573513-64573723(-)$1	210	2	9	11.3636
:::CCC:	chrM:12180-12398(+)$1	218	187	194	10.5454
cc"""cc	chr10:81074843-81075127(+)$1	284	141	148	13.4545
^^^^^^^	chr7:149286059-149286268(-)$1	209	147	154	8.9090
:ccc###	chr15:45492508-45492745(-)$1	237	192	199	10.6363
hhhhhmm	chr5:140090781-140090996(+)$1	215	130	137	9.9090
mbbffff	chrX:16185913-16186162(-)$1	249	134	141	13.6363
FFFbb[b	chr1:90390444-90390734(+)$1	290	19	26	10.0909
NNNNIII	chr21:42006116-42006339(-)$1	223	8	15	10.2727
dddd[ee	chr10:79793520-79793765(+)$1	245	13	20	10.0909
JJJJJJJ	chr12:133451183-133451460(-)$1	277	11	18	11.0000
[a!!fff	chr17:33430286-33430572(-)$1	286	116	123	14.3636
:bb[ddd	chr1:4771981-4772204(+)$1	223	20	27	10.6363
eeeeeEE	chr1:227087874-227088080(+)$1	206	22	29	11.3636
:::::::	chr5:180692567-180692776(+)$1	209	0	7	10.6363
FFFFFFI	chr1:90390387-90390644(+)$1	257	76	83	10.0909
qqdddd]	chr20:36026940-36027238(+)$1	298	79	86	11.0000
DDD{CCC	chr11:72414344-72414560(-)$1	216	1	8	13.4545
dddd!!d	chr4:39459954-39460161(-)$1	207	4	11	10.4545
hhhh[ff	chr17:26919458-26919700(-)$1	242	96	103	13.6363
eeedddd	chrM:1162-1377(+)$1	215	40	47	13.0000
!!cccnn	chr1:569796-570078(-)$1	282	6	13	9.9090
mbbffff	chrX:16185900-16186113(-)$1	213	85	92	13.6363
::::DDD	chr9:138901415-138901662(-)$1	247	85	92	11.2727
eccc!!b	chr10:18934731-18934984(-)$1	253	52	59	9.9090
:::::CC	chr10:128256268-128256476(-)$1	208	5	12	10.3636
eeeehhh	chr10:43492980-43493190(+)$1	210	53	60	11.0000
peeeee:	chr17:73029931-73030188(+)$1	257	106	113	10.0909
eeeehhh	chr4:39460410-39460632(-)$1	222	18	25	9.5454
66666bb	chr16:18801528-18801755(-)$1	227	175	182	10.4545
mbbffff	chrX:16185864-16186100(-)$1	236	72	79	13.6363
HHHHHHK	chr17:8125488-8125719(-)$1	231	23	30	10.3636
~~EEEEE	chr19:45981775-45981998(-)$1	223	214	221	13.4545
]dddd22	chr19:14280678-14280944(-)$1	266	170	177	13.6363
3ccc]bb	chr11:9481795-9482048(-)$1	253	139	146	13.4545
JJJJJJJ	chr19:45981771-45981975(-)$1	204	191	198	13.4545
ooodddd	chr10:64573524-64573735(-)$1	211	14	21	11.3636

#DB
..)))))	chr17:26919409-26919658(-)$1	1	54	61	13.6363
..)))))	chr19:45981798-45982021(-)$1	1	114	121	9.9090
(((..((	chr1:151175393-151175644(+)$1	1	60	67	9.9090
..(((((	chr7:149286068-149286300(-)$1	1	179	186	8.9090
(((((((	chr10:43492990-43493201(+)$1	1	43	50	11.0000
))))...	chr6:76735915-76736142(-)$1	1	24	31	10.5454
((.....	chr19:45981757-45981971(-)$1	1	187	194	13.4545
)))....	chr6:31958179-31958383(+)$1	1	113	120	9.3636
)))))))	chrM:1177-1382(+)$1	1	25	32	13.0000
((((...	chr1:45187452-45187665(-)$1	1	67	74	10.0909
(((((..	chr5:140090800-140091031(+)$1	1	111	118	9.9090
((((.((	chr11:75115118-75115352(+)$1	1	57	64	10.2727
(((((((	chr1:45187465-45187674(-)$1	1	76	83	10.0909
....)))	chr10:128256276-128256488(-)$1	1	17	24	10.3636
((((((.	chr20:36027093-36027357(+)$1	1	4	11	10.0909
((...((	chr1:227087882-227088095(+)$1	1	14	21	11.3636
...))).	chrM:12176-12380(+)$1	1	191	198	10.5454
)).....	chr11:75115614-75115831(+)$1	1	173	180	9.9090
....(((	chr10:64573513-64573723(-)$1	1	2	9	11.3636
...))).	chrM:12180-12398(+)$1	1	187	194	10.5454
((...((	chr10:81074843-81075127(+)$1	1	141	148	13.4545
.......	chr7:149286059-149286268(-)$1	1	147	154	8.9090
.(((...	chr15:45492508-45492745(-)$1	1	192	199	10.6363
(((((..	chr5:140090781-140090996(+)$1	1	130	137	9.9090
.))))))	chrX:16185913-16186162(-)$1	1	134	141	13.6363
(((((.(	chr1:90390444-90390734(+)$1	1	19	26	10.0909
....(((	chr21:42006116-42006339(-)$1	1	8	15	10.2727
((((.((	chr10:79793520-79793765(+)$1	1	13	20	10.0909
(((((((	chr12:133451183-133451460(-)$1	1	11	18	11.0000
.(..(((	chr17:33430286-33430572(-)$1	1	116	123	14.3636
.((.(((	chr1:4771981-4772204(+)$1	1	20	27	10.6363
)))))((	chr1:227087874-227088080(+)$1	1	22	29	11.3636
.......	chr5:180692567-180692776(+)$1	1	0	7	10.6363
(((((((	chr1:90390387-90390644(+)$1	1	76	83	10.0909
..)))).	chr20:36026940-36027238(+)$1	1	79	86	11.0000
(((.(((	chr11:72414344-72414560(-)$1	1	1	8	13.4545
((((..(	chr4:39459954-39460161(-)$1	1	4	11	10.4545
((((.((	chr17:26919458-26919700(-)$1	1	96	103	13.6363
)))))))	chrM:1162-1377(+)$1	1	40	47	13.0000
..(((..	chr1:569796-570078(-)$1	1	6	13	9.9090
.))))))	chrX:16185900-16186113(-)$1	1	85	92	13.6363
....(((	chr9:138901415-138901662(-)$1	1	85	92	11.2727
((((..(	chr10:18934731-18934984(-)$1	1	52	59	9.9090
.....((	chr10:128256268-128256476(-)$1	1	5	12	10.3636
(((((((	chr10:43492980-43493190(+)$1	1	53	60	11.0000
.))))).	chr17:73029931-73030188(+)$1	1	106	113	10.0909
))))(((	chr4:39460410-39460632(-)$1	1	18	25	9.5454
.....))	chr16:18801528-18801755(-)$1	1	175	182	10.4545
.))))))	chrX:16185864-16186100(-)$1	1	72	79	13.6363
((((((.	chr17:8125488-8125719(-)$1	1	23	30	10.3636
..)))))	chr19:45981775-45981998(-)$1	1	214	221	13.4545
.))))..	chr19:14280678-14280944(-)$1	1	170	177	13.6363
.))).))	chr11:9481795-9482048(-)$1	1	139	146	13.4545
)))))))	chr19:45981771-45981975(-)$1	1	191	198	13.4545
...))))	chr10:64573524-64573735(-)$1	1	14	21	11.3636

#PSSM
A : 0.69	a : 0.10	g : 0.07	G : 0.05	U : 0.05	C : 0.01	
G : 0.56	g : 0.14	U : 0.10	A : 0.07	C : 0.07	a : 0.01	c : 0.01	
C : 0.80	c : 0.14	g : 0.03	G : 0.01	
C : 0.81	c : 0.18	
U : 0.76	u : 0.16	A : 0.05	a : 0.01	
G : 0.72	g : 0.16	U : 0.07	c : 0.01	C : 0.01	
G : 0.30	A : 0.21	C : 0.18	U : 0.10	g : 0.09	a : 0.03	c : 0.03	u : 0.01	

#score	616.4545454545456
#seq	55
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_CDS_m3_run1.nuc.txt

#NT
GGA	chr7:128142495-128142797(+)$1	302	49	52	8.9999
GGA	chr16:447772-448041(+)$1	269	26	29	8.9999
GGA	chr15:38776738-38777014(+)$1	276	2	5	8.9999
GGA	chr1:150598054-150598286(-)$1	232	20	23	8.9999
GGA	chr21:46954417-46954715(-)$1	298	228	231	8.9999
GGA	chr11:62293156-62293424(-)$1	268	86	89	8.9999
GGA	chr5:126889444-126889738(+)$1	294	144	147	8.9999
GGA	chr11:64894400-64894674(+)$1	274	47	50	8.9999
GGA	chr22:20110048-20110318(+)$1	270	110	113	8.9999
GGA	chr9:139249995-139250264(+)$1	269	1	4	8.9999
GGA	chr17:37561438-37561682(-)$1	244	2	5	8.9999
GGA	chr16:69390010-69390294(-)$1	284	123	126	8.9999
GGA	chr19:6413618-6413867(-)$1	249	141	144	8.9999
gga	chr19:1555249-1555530(-)$1	281	22	25	8.9999
GGA	chr16:448890-449114(+)$1	224	32	35	8.9999
GGA	chr12:122186052-122186352(+)$1	300	269	272	8.9999
GGA	chr11:126146857-126147104(+)$1	247	3	6	8.9999
GGA	chr16:31501538-31501783(-)$1	245	69	72	8.9999
GGA	chr16:448121-448349(+)$1	228	4	7	8.9999
GGA	chr4:77957792-77958073(+)$1	281	148	151	8.9999
GGA	chr22:39917442-39917683(+)$1	241	49	52	8.9999
GGA	chr1:183521997-183522262(+)$1	265	164	167	8.9999
GGA	chr11:62290069-62290320(-)$1	251	81	84	8.9999
GGA	chr7:24690015-24690277(+)$1	262	145	148	8.9999
GGA	chr1:205683472-205683717(-)$1	245	140	143	8.9999
GGA	chr19:14203459-14203724(-)$1	265	145	148	8.9999
GGA	chr17:73314702-73314972(-)$1	270	5	8	8.9999
GGA	chr17:79826291-79826563(-)$1	272	55	58	8.9999
GGA	chr19:49964856-49965141(+)$1	285	86	89	8.9999
GGA	chr2:54197770-54198041(-)$1	271	41	44	8.9999
gga	chr19:1592529-1592779(-)$1	250	7	10	8.9999
GGA	chr17:79396527-79396785(+)$1	258	9	12	8.9999
GGA	chr10:124924399-124924703(+)$1	304	11	14	8.9999
GGA	chr19:49841154-49841502(-)$1	348	33	36	8.9999
GGA	chr12:133295179-133295465(+)$1	286	153	156	8.9999
GGA	chr11:62289984-62290239(-)$1	255	0	3	8.9999
GGA	chr1:117957233-117957476(+)$1	243	21	24	8.9999
GGA	chr11:118472290-118472576(+)$1	286	10	13	8.9999
GGA	chr2:44547513-44547776(-)$1	263	31	34	8.9999
gga	chr15:38776583-38776805(+)$1	222	1	4	8.9999
GGA	chr7:77166715-77166997(+)$1	282	150	153	8.9999
GGA	chr22:39131168-39131454(-)$1	286	63	66	8.9999
GGA	chr11:62296915-62297194(-)$1	279	58	61	8.9999
GGA	chr1:154148602-154148824(-)$1	222	131	134	8.9999
GGA	chr8:27143492-27143757(-)$1	265	64	67	8.9999
GGA	chr19:2425969-2426221(-)$1	252	143	146	8.9999
GGA	chr22:30732916-30733223(-)$1	307	130	133	8.9999
GGA	chr11:62393450-62393679(-)$1	229	17	20	8.9999
GGA	chr1:205683414-205683671(-)$1	257	94	97	8.9999
GGA	chr8:30669762-30670091(-)$1	329	156	159	8.9999
GGA	chr19:45912810-45913092(+)$1	282	60	63	8.9999
GGA	chr1:156713859-156714085(-)$1	226	21	24	8.9999
GGA	chr11:126146252-126146497(+)$1	245	64	67	8.9999
GGA	chr1:32377221-32377438(-)$1	217	10	13	8.9999
GGA	chr2:37429952-37430208(+)$1	256	23	26	8.9999
gga	chr17:55333992-55334256(+)$1	264	2	5	8.9999
gga	chr2:54197716-54197970(-)$1	254	5	8	8.9999
GGA	chr16:69165154-69165468(-)$1	314	8	11	8.9999
GGA	chr12:132402960-132403244(+)$1	284	22	25	8.9999
GGA	chr19:6413377-6413656(-)$1	279	40	43	8.9999
GGA	chr11:126146110-126146397(+)$1	287	17	20	8.9999
GGA	chr19:49964946-49965219(+)$1	273	15	18	8.9999
GGA	chr16:2867275-2867541(+)$1	266	42	45	8.9999
GGA	chr19:7705434-7705718(+)$1	284	114	117	8.9999
GGA	chr22:39918027-39918261(+)$1	234	81	84	8.9999
GGA	chr5:159492169-159492444(+)$1	275	162	165	8.9999
GGA	chr17:37561380-37561638(-)$1	258	44	47	8.9999
GGA	chr10:75008950-75009190(-)$1	240	32	35	8.9999
gga	chr19:47778067-47778305(+)$1	238	4	7	8.9999
GGA	chr14:105235803-105236125(-)$1	322	4	7	8.9999
GGA	chr11:62291333-62291624(-)$1	291	26	29	8.9999
gga	chr19:49964743-49965003(+)$1	260	5	8	8.9999
GGA	chr19:2270419-2270680(+)$1	261	22	25	8.9999
gga	chr15:38776641-38776895(+)$1	254	0	3	8.9999
GGA	chr19:5130925-5131211(+)$1	286	52	55	8.9999
GGA	chr19:18548493-18548731(-)$1	238	24	27	8.9999
GGA	chr19:2270531-2270772(+)$1	241	25	28	8.9999
GGA	chr11:62482708-62482948(-)$1	240	18	21	8.9999
GGA	chr19:18653591-18653870(-)$1	279	16	19	8.9999
GGA	chr1:156713856-156714059(-)$1	203	20	23	8.9999
GGA	chr1:43850074-43850323(-)$1	249	11	14	8.9999
GGA	chr11:62482646-62482883(-)$1	237	61	64	8.9999
GGA	chr12:132402869-132403160(+)$1	291	0	3	8.9999
GGA	chr12:120534321-120534585(-)$1	264	2	5	8.9999
GGA	chr2:37429824-37430072(+)$1	248	151	154	8.9999
GGA	chr1:183522093-183522333(+)$1	240	68	71	8.9999
GGA	chr6:34840097-34840334(+)$1	237	60	63	8.9999
GGA	chr4:52709720-52709983(+)$1	263	15	18	8.9999
GGA	chr8:23431091-23431352(+)$1	261	1	4	8.9999
GGA	chr6:24720015-24720250(-)$1	235	101	104	8.9999
gga	chr5:137688423-137688669(+)$1	246	10	13	8.9999
GGA	chr11:62292794-62293048(-)$1	254	102	105	8.9999
GGA	chr11:63525707-63525965(+)$1	258	41	44	8.9999
GGA	chr19:14203524-14203788(-)$1	264	9	12	8.9999
GGA	chr19:2270300-2270560(+)$1	260	25	28	8.9999
GGA	chr5:126889387-126889643(+)$1	256	201	204	8.9999

#otherMatches

#Struct PSSM
fff	chr7:128607277-128607534(-)$1	257	132	135	8.9999
ggg	chr7:128142495-128142797(+)$1	302	49	52	8.9999
ooo	chr16:447772-448041(+)$1	269	26	29	8.9999
DDL	chr15:38776738-38777014(+)$1	276	2	5	8.9999
FFF	chr1:150598054-150598286(-)$1	232	20	23	8.9999
333	chr21:46954417-46954715(-)$1	298	228	231	8.9999
DDD	chr11:62293156-62293424(-)$1	268	86	89	8.9999
ccc	chr5:126889444-126889738(+)$1	294	144	147	8.9999
GGG	chr11:64894400-64894674(+)$1	274	47	50	8.9999
cco	chr22:20110048-20110318(+)$1	270	110	113	8.9999
GGG	chr9:139249995-139250264(+)$1	269	1	4	8.9999
hhh	chr17:37561438-37561682(-)$1	244	2	5	8.9999
qqq	chr16:69390010-69390294(-)$1	284	123	126	8.9999
ff^	chr19:6413618-6413867(-)$1	249	141	144	8.9999
amm	chr19:1555249-1555530(-)$1	281	22	25	8.9999
NNN	chr16:448890-449114(+)$1	224	32	35	8.9999
cc:	chr12:122186052-122186352(+)$1	300	269	272	8.9999
HHH	chr11:126146857-126147104(+)$1	247	3	6	8.9999
iii	chr16:31501538-31501783(-)$1	245	69	72	8.9999
DDD	chr16:448121-448349(+)$1	228	4	7	8.9999
fff	chr4:77957792-77958073(+)$1	281	148	151	8.9999
ggg	chr22:39917442-39917683(+)$1	241	49	52	8.9999
DDK	chr1:183521997-183522262(+)$1	265	164	167	8.9999
ccd	chr11:62290069-62290320(-)$1	251	81	84	8.9999
c]c	chr7:24690015-24690277(+)$1	262	145	148	8.9999
ddd	chr1:205683472-205683717(-)$1	245	140	143	8.9999
ddd	chr19:14203459-14203724(-)$1	265	145	148	8.9999
KKI	chr17:73314702-73314972(-)$1	270	5	8	8.9999
eeg	chr17:79826291-79826563(-)$1	272	55	58	8.9999
ee]	chr19:49964856-49965141(+)$1	285	86	89	8.9999
nnn	chr2:54197770-54198041(-)$1	271	41	44	8.9999
F::	chr19:1592529-1592779(-)$1	250	7	10	8.9999
bb[	chr17:79396527-79396785(+)$1	258	9	12	8.9999
GGG	chr10:124924399-124924703(+)$1	304	11	14	8.9999
sse	chr19:49841154-49841502(-)$1	348	33	36	8.9999
hhh	chr12:133295179-133295465(+)$1	286	153	156	8.9999
::d	chr11:62289984-62290239(-)$1	255	0	3	8.9999
DLL	chr1:117957233-117957476(+)$1	243	21	24	8.9999
EEE	chr11:118472290-118472576(+)$1	286	10	13	8.9999
ccc	chr2:44547513-44547776(-)$1	263	31	34	8.9999
:::	chr15:38776583-38776805(+)$1	222	1	4	8.9999
ddd	chr7:77166715-77166997(+)$1	282	150	153	8.9999
ppp	chr22:39131168-39131454(-)$1	286	63	66	8.9999
iii	chr11:62296915-62297194(-)$1	279	58	61	8.9999
[a[	chr1:154148602-154148824(-)$1	222	131	134	8.9999
ffD	chr8:27143492-27143757(-)$1	265	64	67	8.9999
33e	chr19:2425969-2426221(-)$1	252	143	146	8.9999
cc2	chr22:30732916-30733223(-)$1	307	130	133	8.9999
eev	chr11:62393450-62393679(-)$1	229	17	20	8.9999
III	chr1:205683414-205683671(-)$1	257	94	97	8.9999
bnn	chr8:30669762-30670091(-)$1	329	156	159	8.9999
mmm	chr19:45912810-45913092(+)$1	282	60	63	8.9999
HHH	chr1:156713859-156714085(-)$1	226	21	24	8.9999
2ff	chr11:126146252-126146497(+)$1	245	64	67	8.9999
dd[	chr1:32377221-32377438(-)$1	217	10	13	8.9999
fff	chr2:37429952-37430208(+)$1	256	23	26	8.9999
:::	chr17:55333992-55334256(+)$1	264	2	5	8.9999
ggg	chr2:54197716-54197970(-)$1	254	5	8	8.9999
:::	chr16:69165154-69165468(-)$1	314	8	11	8.9999
!dd	chr12:132402960-132403244(+)$1	284	22	25	8.9999
bb&	chr19:6413377-6413656(-)$1	279	40	43	8.9999
sss	chr11:126146110-126146397(+)$1	287	17	20	8.9999
e::	chr19:49964946-49965219(+)$1	273	15	18	8.9999
!!d	chr16:2867275-2867541(+)$1	266	42	45	8.9999
a[a	chr19:7705434-7705718(+)$1	284	114	117	8.9999
ddd	chr22:39918027-39918261(+)$1	234	81	84	8.9999
ggg	chr5:159492169-159492444(+)$1	275	162	165	8.9999
eee	chr17:37561380-37561638(-)$1	258	44	47	8.9999
BBI	chr10:75008950-75009190(-)$1	240	32	35	8.9999
cmm	chr19:47778067-47778305(+)$1	238	4	7	8.9999
CCC	chr14:105235803-105236125(-)$1	322	4	7	8.9999
bb]	chr11:62291333-62291624(-)$1	291	26	29	8.9999
EEE	chr19:49964743-49965003(+)$1	260	5	8	8.9999
CCC	chr19:2270419-2270680(+)$1	261	22	25	8.9999
:::	chr15:38776641-38776895(+)$1	254	0	3	8.9999
gg:	chr19:5130925-5131211(+)$1	286	52	55	8.9999
b66	chr19:18548493-18548731(-)$1	238	24	27	8.9999
hhh	chr19:2270531-2270772(+)$1	241	25	28	8.9999
!!d	chr11:62482708-62482948(-)$1	240	18	21	8.9999
ddd	chr19:18653591-18653870(-)$1	279	16	19	8.9999
DDK	chr1:156713856-156714059(-)$1	203	20	23	8.9999
FFF	chr1:43850074-43850323(-)$1	249	11	14	8.9999
LCC	chr11:62482646-62482883(-)$1	237	61	64	8.9999
:::	chr12:132402869-132403160(+)$1	291	0	3	8.9999
iii	chr12:120534321-120534585(-)$1	264	2	5	8.9999
fff	chr2:37429824-37430072(+)$1	248	151	154	8.9999
bb:	chr1:183522093-183522333(+)$1	240	68	71	8.9999
cc:	chr6:34840097-34840334(+)$1	237	60	63	8.9999
cc:	chr4:52709720-52709983(+)$1	263	15	18	8.9999
:::	chr8:23431091-23431352(+)$1	261	1	4	8.9999
fff	chr6:24720015-24720250(-)$1	235	101	104	8.9999
fff	chr5:137688423-137688669(+)$1	246	10	13	8.9999
ccc	chr11:62292794-62293048(-)$1	254	102	105	8.9999
===	chr11:63525707-63525965(+)$1	258	41	44	8.9999
ff[	chr19:14203524-14203788(-)$1	264	9	12	8.9999
"""	chr19:2270300-2270560(+)$1	260	25	28	8.9999
hqq	chr5:126889387-126889643(+)$1	256	201	204	8.9999

#DB
)))	chr7:128607277-128607534(-)$1	1	132	135	8.9999
(((	chr7:128142495-128142797(+)$1	1	49	52	8.9999
...	chr16:447772-448041(+)$1	1	26	29	8.9999
((.	chr15:38776738-38777014(+)$1	1	2	5	8.9999
(((	chr1:150598054-150598286(-)$1	1	20	23	8.9999
...	chr21:46954417-46954715(-)$1	1	228	231	8.9999
)))	chr11:62293156-62293424(-)$1	1	86	89	8.9999
)))	chr5:126889444-126889738(+)$1	1	144	147	8.9999
(((	chr11:64894400-64894674(+)$1	1	47	50	8.9999
((.	chr22:20110048-20110318(+)$1	1	110	113	8.9999
(((	chr9:139249995-139250264(+)$1	1	1	4	8.9999
(((	chr17:37561438-37561682(-)$1	1	2	5	8.9999
...	chr16:69390010-69390294(-)$1	1	123	126	8.9999
((.	chr19:6413618-6413867(-)$1	1	141	144	8.9999
(..	chr19:1555249-1555530(-)$1	1	22	25	8.9999
...	chr16:448890-449114(+)$1	1	32	35	8.9999
)).	chr12:122186052-122186352(+)$1	1	269	272	8.9999
(((	chr11:126146857-126147104(+)$1	1	3	6	8.9999
(((	chr16:31501538-31501783(-)$1	1	69	72	8.9999
(((	chr16:448121-448349(+)$1	1	4	7	8.9999
)))	chr4:77957792-77958073(+)$1	1	148	151	8.9999
(((	chr22:39917442-39917683(+)$1	1	49	52	8.9999
((.	chr1:183521997-183522262(+)$1	1	164	167	8.9999
))(	chr11:62290069-62290320(-)$1	1	81	84	8.9999
).)	chr7:24690015-24690277(+)$1	1	145	148	8.9999
(((	chr1:205683472-205683717(-)$1	1	140	143	8.9999
(((	chr19:14203459-14203724(-)$1	1	145	148	8.9999
..(	chr17:73314702-73314972(-)$1	1	5	8	8.9999
(((	chr17:79826291-79826563(-)$1	1	55	58	8.9999
)).	chr19:49964856-49965141(+)$1	1	86	89	8.9999
...	chr2:54197770-54198041(-)$1	1	41	44	8.9999
(..	chr19:1592529-1592779(-)$1	1	7	10	8.9999
((.	chr17:79396527-79396785(+)$1	1	9	12	8.9999
(((	chr10:124924399-124924703(+)$1	1	11	14	8.9999
..)	chr19:49841154-49841502(-)$1	1	33	36	8.9999
(((	chr12:133295179-133295465(+)$1	1	153	156	8.9999
..(	chr11:62289984-62290239(-)$1	1	0	3	8.9999
(..	chr1:117957233-117957476(+)$1	1	21	24	8.9999
(((	chr11:118472290-118472576(+)$1	1	10	13	8.9999
(((	chr2:44547513-44547776(-)$1	1	31	34	8.9999
...	chr15:38776583-38776805(+)$1	1	1	4	8.9999
(((	chr7:77166715-77166997(+)$1	1	150	153	8.9999
...	chr22:39131168-39131454(-)$1	1	63	66	8.9999
)))	chr11:62296915-62297194(-)$1	1	58	61	8.9999
.(.	chr1:154148602-154148824(-)$1	1	131	134	8.9999
))(	chr8:27143492-27143757(-)$1	1	64	67	8.9999
..)	chr19:2425969-2426221(-)$1	1	143	146	8.9999
)).	chr22:30732916-30733223(-)$1	1	130	133	8.9999
((.	chr11:62393450-62393679(-)$1	1	17	20	8.9999
(((	chr1:205683414-205683671(-)$1	1	94	97	8.9999
(..	chr8:30669762-30670091(-)$1	1	156	159	8.9999
...	chr19:45912810-45913092(+)$1	1	60	63	8.9999
(((	chr1:156713859-156714085(-)$1	1	21	24	8.9999
.))	chr11:126146252-126146497(+)$1	1	64	67	8.9999
((.	chr1:32377221-32377438(-)$1	1	10	13	8.9999
(((	chr2:37429952-37430208(+)$1	1	23	26	8.9999
...	chr17:55333992-55334256(+)$1	1	2	5	8.9999
(((	chr2:54197716-54197970(-)$1	1	5	8	8.9999
...	chr16:69165154-69165468(-)$1	1	8	11	8.9999
.((	chr12:132402960-132403244(+)$1	1	22	25	8.9999
((.	chr19:6413377-6413656(-)$1	1	40	43	8.9999
...	chr11:126146110-126146397(+)$1	1	17	20	8.9999
)..	chr19:49964946-49965219(+)$1	1	15	18	8.9999
..(	chr16:2867275-2867541(+)$1	1	42	45	8.9999
(.(	chr19:7705434-7705718(+)$1	1	114	117	8.9999
)))	chr22:39918027-39918261(+)$1	1	81	84	8.9999
(((	chr5:159492169-159492444(+)$1	1	162	165	8.9999
(((	chr17:37561380-37561638(-)$1	1	44	47	8.9999
(((	chr10:75008950-75009190(-)$1	1	32	35	8.9999
(..	chr19:47778067-47778305(+)$1	1	4	7	8.9999
(((	chr14:105235803-105236125(-)$1	1	4	7	8.9999
)).	chr11:62291333-62291624(-)$1	1	26	29	8.9999
(((	chr19:49964743-49965003(+)$1	1	5	8	8.9999
(((	chr19:2270419-2270680(+)$1	1	22	25	8.9999
...	chr15:38776641-38776895(+)$1	1	0	3	8.9999
)).	chr19:5130925-5131211(+)$1	1	52	55	8.9999
)..	chr19:18548493-18548731(-)$1	1	24	27	8.9999
(((	chr19:2270531-2270772(+)$1	1	25	28	8.9999
..(	chr11:62482708-62482948(-)$1	1	18	21	8.9999
(((	chr19:18653591-18653870(-)$1	1	16	19	8.9999
((.	chr1:156713856-156714059(-)$1	1	20	23	8.9999
(((	chr1:43850074-43850323(-)$1	1	11	14	8.9999
.((	chr11:62482646-62482883(-)$1	1	61	64	8.9999
...	chr12:132402869-132403160(+)$1	1	0	3	8.9999
(((	chr12:120534321-120534585(-)$1	1	2	5	8.9999
(((	chr2:37429824-37430072(+)$1	1	151	154	8.9999
)).	chr1:183522093-183522333(+)$1	1	68	71	8.9999
)).	chr6:34840097-34840334(+)$1	1	60	63	8.9999
)).	chr4:52709720-52709983(+)$1	1	15	18	8.9999
...	chr8:23431091-23431352(+)$1	1	1	4	8.9999
(((	chr6:24720015-24720250(-)$1	1	101	104	8.9999
(((	chr5:137688423-137688669(+)$1	1	10	13	8.9999
(((	chr11:62292794-62293048(-)$1	1	102	105	8.9999
(((	chr11:63525707-63525965(+)$1	1	41	44	8.9999
((.	chr19:14203524-14203788(-)$1	1	9	12	8.9999
...	chr19:2270300-2270560(+)$1	1	25	28	8.9999
(..	chr5:126889387-126889643(+)$1	1	201	204	8.9999

#PSSM
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	
A : 0.90	a : 0.09	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_CDS_m1_run1.nuc.txt

#NT
UGGG	chrX:118603816-118604059(+)$1	243	129	133	11.9999
UGGG	chr17:7415444-7415689(+)$1	245	9	13	11.9999
UGGG	chr19:34890523-34890726(+)$1	203	41	45	11.9999
UGGG	chr17:76182927-76183171(-)$1	244	188	192	11.9999
UGGG	chr12:116714783-116715074(-)$1	291	156	160	11.9999
UGGG	chr19:59057156-59057361(+)$1	205	192	196	11.9999
UGGG	chr9:35714543-35714753(-)$1	210	17	21	11.9999
UGGG	chr9:35101087-35101368(-)$1	281	25	29	11.9999
UGGG	chr11:65622665-65622910(-)$1	245	60	64	11.9999
UGGG	chr17:80039856-80040080(-)$1	224	3	7	11.9999
UGGG	chr1:1684190-1684446(-)$1	256	155	159	11.9999
UGGG	chr16:3711917-3712233(-)$1	316	14	18	11.9999
UGGG	chr12:6646649-6646855(+)$1	206	5	9	11.9999
UGGG	chr1:8923199-8923439(-)$1	240	0	4	11.9999
UGGG	chrX:71493550-71493777(-)$1	227	148	152	11.9999
UGGG	chr12:120636362-120636581(-)$1	219	73	77	11.9999
UGGG	chr8:144662592-144662836(-)$1	244	166	170	11.9999
UGGG	chr7:75614866-75615127(+)$1	261	232	236	11.9999
UGGG	chr1:65858288-65858596(+)$1	308	26	30	11.9999
UGGG	chrX:153594330-153594541(-)$1	211	192	196	11.9999
UGGG	chr1:44447397-44447691(+)$1	294	38	42	11.9999
UGGG	chr17:80036908-80037171(-)$1	263	248	252	11.9999
UGGG	chr19:11546828-11547113(+)$1	285	146	150	11.9999
UGGG	chr19:50905373-50905701(+)$1	328	95	99	11.9999
UGGG	chr7:99686812-99687054(+)$1	242	56	60	11.9999
UGGG	chr22:50898862-50899098(-)$1	236	72	76	11.9999
UGGG	chr19:11547117-11547383(+)$1	266	14	18	11.9999
UGGG	chr7:150645489-150645729(-)$1	240	34	38	11.9999
UGGG	chr7:100410323-100410565(-)$1	242	81	85	11.9999
UGGG	chr7:100276217-100276444(+)$1	227	28	32	11.9999
UGGG	chr17:41173851-41174087(-)$1	236	109	113	11.9999
UGGG	chr22:24237140-24237465(+)$1	325	124	128	11.9999
UGGG	chr7:933268-933533(+)$1	265	26	30	11.9999
UGGG	chr14:102515780-102516017(+)$1	237	55	59	11.9999
UGGG	chr15:90631761-90632040(-)$1	279	32	36	11.9999
UGGG	chr9:133760253-133760480(+)$1	227	206	210	11.9999
UGGG	chr6:30688177-30688412(+)$1	235	0	4	11.9999
UGGG	chr11:61579962-61580238(-)$1	276	8	12	11.9999
UGGG	chr11:812473-812693(+)$1	220	22	26	11.9999
UGGG	chr19:36037920-36038154(+)$1	234	228	232	11.9999
UGGG	chr10:71154617-71154892(+)$1	275	117	121	11.9999
UGGG	chr12:124839892-124840143(-)$1	251	41	45	11.9999
UGGG	chr19:3983009-3983233(-)$1	224	134	138	11.9999
UGGG	chr19:34890012-34890305(+)$1	293	3	7	11.9999
UGGG	chr9:134340260-134340492(+)$1	232	213	217	11.9999
UGGG	chrX:153590567-153590787(-)$1	220	3	7	11.9999
UGGG	chr3:49137361-49137600(-)$1	239	5	9	11.9999
UGGG	chr22:41752299-41752560(+)$1	261	240	244	11.9999
UGGG	chr1:8926430-8926653(-)$1	223	10	14	11.9999
UGGG	chr6:31617000-31617259(-)$1	259	3	7	11.9999
UGGG	chr8:145625754-145625987(-)$1	233	12	16	11.9999
UGGG	chr8:124219296-124219562(+)$1	266	216	220	11.9999
UGGG	chr5:180668435-180668732(-)$1	297	116	120	11.9999
UGGG	chr11:64875334-64875568(+)$1	234	12	16	11.9999
UGGG	chr17:79892443-79892657(-)$1	214	65	69	11.9999
UGGG	chr19:18499388-18499672(+)$1	284	97	101	11.9999
UGGG	chr1:11861290-11861542(-)$1	252	23	27	11.9999
UGGG	chr19:46190667-46190958(-)$1	291	263	267	11.9999
UGGG	chr11:61068285-61068505(-)$1	220	41	45	11.9999
uggg	chr17:26883764-26884058(-)$1	294	10	14	11.9999
UGGG	chr5:180666423-180666682(-)$1	259	37	41	11.9999
UGGG	chr22:42301436-42301665(+)$1	229	148	152	11.9999
UGGG	chrX:153581430-153581664(-)$1	234	46	50	11.9999
UGGG	chr14:101200597-101200851(+)$1	254	47	51	11.9999
UGGG	chr5:154179333-154179553(+)$1	220	23	27	11.9999
UGGG	chr19:11134093-11134303(+)$1	210	87	91	11.9999
UGGG	chr17:33998726-33999016(+)$1	290	47	51	11.9999
UGGG	chr16:30078879-30079082(+)$1	203	0	4	11.9999
UGGG	chr22:37425419-37425684(+)$1	265	67	71	11.9999
UGGG	chr16:30081108-30081379(+)$1	271	128	132	11.9999
UGGG	chr6:33382633-33382897(+)$1	264	19	23	11.9999
UGGG	chr19:50904993-50905222(+)$1	229	60	64	11.9999
UGGG	chr17:79671585-79671846(+)$1	261	114	118	11.9999
UGGG	chr3:53274207-53274449(-)$1	242	3	7	11.9999
UGGG	chr19:49993391-49993623(+)$1	232	49	53	11.9999
UGGG	chr7:98988538-98988785(+)$1	247	29	33	11.9999
UGGG	chr1:32694635-32694865(+)$1	230	107	111	11.9999
UGGG	chr19:581463-581679(+)$1	216	44	48	11.9999
UGGG	chr16:30078673-30078906(+)$1	233	33	37	11.9999
UGGG	chr22:21799176-21799399(+)$1	223	44	48	11.9999
UGGG	chr17:80042668-80042914(-)$1	246	206	210	11.9999
UGGG	chr19:1619213-1619422(-)$1	209	7	11	11.9999
UGGG	chr11:130013206-130013461(+)$1	255	176	180	11.9999

#otherMatches

#Struct PSSM
DDDD	chr19:50906241-50906498(+)$1	257	20	24	11.9999
]bbF	chrX:118603816-118604059(+)$1	243	129	133	11.9999
Jddd	chr17:7415444-7415689(+)$1	245	9	13	11.9999
{BBL	chr19:34890523-34890726(+)$1	203	41	45	11.9999
eeee	chr17:76182927-76183171(-)$1	244	188	192	11.9999
ddd]	chr12:116714783-116715074(-)$1	291	156	160	11.9999
DDDD	chr19:59057156-59057361(+)$1	205	192	196	11.9999
bGGG	chr9:35714543-35714753(-)$1	210	17	21	11.9999
fff"	chr9:35101087-35101368(-)$1	281	25	29	11.9999
gggg	chr11:65622665-65622910(-)$1	245	60	64	11.9999
dddd	chr17:80039856-80040080(-)$1	224	3	7	11.9999
cccp	chr1:1684190-1684446(-)$1	256	155	159	11.9999
:fff	chr16:3711917-3712233(-)$1	316	14	18	11.9999
ffff	chr12:6646649-6646855(+)$1	206	5	9	11.9999
dddd	chr1:8923199-8923439(-)$1	240	0	4	11.9999
ffff	chrX:71493550-71493777(-)$1	227	148	152	11.9999
ffff	chr12:120636362-120636581(-)$1	219	73	77	11.9999
e[cc	chr8:144662592-144662836(-)$1	244	166	170	11.9999
dd[f	chr7:75614866-75615127(+)$1	261	232	236	11.9999
=ppp	chr1:65858288-65858596(+)$1	308	26	30	11.9999
]eee	chrX:153594330-153594541(-)$1	211	192	196	11.9999
:fff	chr1:44447397-44447691(+)$1	294	38	42	11.9999
ffff	chr17:80036908-80037171(-)$1	263	248	252	11.9999
dddd	chr19:11546828-11547113(+)$1	285	146	150	11.9999
dddd	chr19:50905373-50905701(+)$1	328	95	99	11.9999
====	chr7:99686812-99687054(+)$1	242	56	60	11.9999
eeee	chr22:50898862-50899098(-)$1	236	72	76	11.9999
E:GG	chr19:11547117-11547383(+)$1	266	14	18	11.9999
JJJJ	chr7:150645489-150645729(-)$1	240	34	38	11.9999
peee	chr7:100410323-100410565(-)$1	242	81	85	11.9999
ccc]	chr7:100276217-100276444(+)$1	227	28	32	11.9999
nnnd	chr17:41173851-41174087(-)$1	236	109	113	11.9999
eeee	chr22:24237140-24237465(+)$1	325	124	128	11.9999
eeee	chr7:933268-933533(+)$1	265	26	30	11.9999
gggg	chr14:102515780-102516017(+)$1	237	55	59	11.9999
D{BB	chr15:90631761-90632040(-)$1	279	32	36	11.9999
DDDD	chr9:133760253-133760480(+)$1	227	206	210	11.9999
dddd	chr6:30688177-30688412(+)$1	235	0	4	11.9999
{FFF	chr11:61579962-61580238(-)$1	276	8	12	11.9999
ffcc	chr11:812473-812693(+)$1	220	22	26	11.9999
YCCC	chr19:36037920-36038154(+)$1	234	228	232	11.9999
GGGG	chr10:71154617-71154892(+)$1	275	117	121	11.9999
cccb	chr12:124839892-124840143(-)$1	251	41	45	11.9999
EECC	chr19:3983009-3983233(-)$1	224	134	138	11.9999
:eee	chr19:34890012-34890305(+)$1	293	3	7	11.9999
]ggg	chr9:134340260-134340492(+)$1	232	213	217	11.9999
::FF	chrX:153590567-153590787(-)$1	220	3	7	11.9999
eedd	chr3:49137361-49137600(-)$1	239	5	9	11.9999
:DDD	chr22:41752299-41752560(+)$1	261	240	244	11.9999
!bb[	chr1:8926430-8926653(-)$1	223	10	14	11.9999
EE{C	chr6:31617000-31617259(-)$1	259	3	7	11.9999
MMII	chr8:145625754-145625987(-)$1	233	12	16	11.9999
HHHH	chr8:124219296-124219562(+)$1	266	216	220	11.9999
ffhh	chr5:180668435-180668732(-)$1	297	116	120	11.9999
HHHH	chr11:64875334-64875568(+)$1	234	12	16	11.9999
gggg	chr17:79892443-79892657(-)$1	214	65	69	11.9999
""cc	chr19:18499388-18499672(+)$1	284	97	101	11.9999
dddd	chr1:11861290-11861542(-)$1	252	23	27	11.9999
2iii	chr19:46190667-46190958(-)$1	291	263	267	11.9999
fffb	chr11:61068285-61068505(-)$1	220	41	45	11.9999
ggg[	chr17:26883764-26884058(-)$1	294	10	14	11.9999
eeen	chr5:180666423-180666682(-)$1	259	37	41	11.9999
]ccc	chr22:42301436-42301665(+)$1	229	148	152	11.9999
mmbb	chrX:153581430-153581664(-)$1	234	46	50	11.9999
ffff	chr14:101200597-101200851(+)$1	254	47	51	11.9999
rfff	chr5:154179333-154179553(+)$1	220	23	27	11.9999
gggg	chr19:11134093-11134303(+)$1	210	87	91	11.9999
JJJJ	chr17:33998726-33999016(+)$1	290	47	51	11.9999
:::d	chr16:30078879-30079082(+)$1	203	0	4	11.9999
iiib	chr22:37425419-37425684(+)$1	265	67	71	11.9999
dddd	chr16:30081108-30081379(+)$1	271	128	132	11.9999
D{FF	chr6:33382633-33382897(+)$1	264	19	23	11.9999
f:GG	chr19:50904993-50905222(+)$1	229	60	64	11.9999
FFFF	chr17:79671585-79671846(+)$1	261	114	118	11.9999
DKKB	chr3:53274207-53274449(-)$1	242	3	7	11.9999
5555	chr19:49993391-49993623(+)$1	232	49	53	11.9999
:eee	chr7:98988538-98988785(+)$1	247	29	33	11.9999
ffff	chr1:32694635-32694865(+)$1	230	107	111	11.9999
PFFF	chr19:581463-581679(+)$1	216	44	48	11.9999
eeee	chr16:30078673-30078906(+)$1	233	33	37	11.9999
gg]a	chr22:21799176-21799399(+)$1	223	44	48	11.9999
IIII	chr17:80042668-80042914(-)$1	246	206	210	11.9999
!eee	chr19:1619213-1619422(-)$1	209	7	11	11.9999
b[cc	chr11:130013206-130013461(+)$1	255	176	180	11.9999

#DB
((((	chr19:50906241-50906498(+)$1	1	20	24	11.9999
.)))	chrX:118603816-118604059(+)$1	1	129	133	11.9999
((((	chr17:7415444-7415689(+)$1	1	9	13	11.9999
.((.	chr19:34890523-34890726(+)$1	1	41	45	11.9999
((((	chr17:76182927-76183171(-)$1	1	188	192	11.9999
))).	chr12:116714783-116715074(-)$1	1	156	160	11.9999
))))	chr19:59057156-59057361(+)$1	1	192	196	11.9999
)(((	chr9:35714543-35714753(-)$1	1	17	21	11.9999
(((.	chr9:35101087-35101368(-)$1	1	25	29	11.9999
))))	chr11:65622665-65622910(-)$1	1	60	64	11.9999
((((	chr17:80039856-80040080(-)$1	1	3	7	11.9999
(((.	chr1:1684190-1684446(-)$1	1	155	159	11.9999
.(((	chr16:3711917-3712233(-)$1	1	14	18	11.9999
((((	chr12:6646649-6646855(+)$1	1	5	9	11.9999
((((	chr1:8923199-8923439(-)$1	1	0	4	11.9999
((((	chrX:71493550-71493777(-)$1	1	148	152	11.9999
))))	chr12:120636362-120636581(-)$1	1	73	77	11.9999
(.((	chr8:144662592-144662836(-)$1	1	166	170	11.9999
((.(	chr7:75614866-75615127(+)$1	1	232	236	11.9999
(...	chr1:65858288-65858596(+)$1	1	26	30	11.9999
.)))	chrX:153594330-153594541(-)$1	1	192	196	11.9999
.(((	chr1:44447397-44447691(+)$1	1	38	42	11.9999
))))	chr17:80036908-80037171(-)$1	1	248	252	11.9999
))))	chr19:11546828-11547113(+)$1	1	146	150	11.9999
))))	chr19:50905373-50905701(+)$1	1	95	99	11.9999
))))	chr7:99686812-99687054(+)$1	1	56	60	11.9999
((((	chr22:50898862-50899098(-)$1	1	72	76	11.9999
(.((	chr19:11547117-11547383(+)$1	1	14	18	11.9999
((((	chr7:150645489-150645729(-)$1	1	34	38	11.9999
.)))	chr7:100410323-100410565(-)$1	1	81	85	11.9999
))).	chr7:100276217-100276444(+)$1	1	28	32	11.9999
...)	chr17:41173851-41174087(-)$1	1	109	113	11.9999
((((	chr22:24237140-24237465(+)$1	1	124	128	11.9999
((((	chr7:933268-933533(+)$1	1	26	30	11.9999
))))	chr14:102515780-102516017(+)$1	1	55	59	11.9999
(.((	chr15:90631761-90632040(-)$1	1	32	36	11.9999
))))	chr9:133760253-133760480(+)$1	1	206	210	11.9999
((((	chr6:30688177-30688412(+)$1	1	0	4	11.9999
.(((	chr11:61579962-61580238(-)$1	1	8	12	11.9999
))((	chr11:812473-812693(+)$1	1	22	26	11.9999
.)))	chr19:36037920-36038154(+)$1	1	228	232	11.9999
((((	chr10:71154617-71154892(+)$1	1	117	121	11.9999
))))	chr12:124839892-124840143(-)$1	1	41	45	11.9999
))))	chr19:3983009-3983233(-)$1	1	134	138	11.9999
.(((	chr19:34890012-34890305(+)$1	1	3	7	11.9999
.)))	chr9:134340260-134340492(+)$1	1	213	217	11.9999
..((	chrX:153590567-153590787(-)$1	1	3	7	11.9999
((((	chr3:49137361-49137600(-)$1	1	5	9	11.9999
.)))	chr22:41752299-41752560(+)$1	1	240	244	11.9999
.((.	chr1:8926430-8926653(-)$1	1	10	14	11.9999
((.(	chr6:31617000-31617259(-)$1	1	3	7	11.9999
..((	chr8:145625754-145625987(-)$1	1	12	16	11.9999
))))	chr8:124219296-124219562(+)$1	1	216	220	11.9999
))((	chr5:180668435-180668732(-)$1	1	116	120	11.9999
((((	chr11:64875334-64875568(+)$1	1	12	16	11.9999
((((	chr17:79892443-79892657(-)$1	1	65	69	11.9999
..((	chr19:18499388-18499672(+)$1	1	97	101	11.9999
))))	chr1:11861290-11861542(-)$1	1	23	27	11.9999
.)))	chr19:46190667-46190958(-)$1	1	263	267	11.9999
((((	chr11:61068285-61068505(-)$1	1	41	45	11.9999
(((.	chr17:26883764-26884058(-)$1	1	10	14	11.9999
(((.	chr5:180666423-180666682(-)$1	1	37	41	11.9999
.)))	chr22:42301436-42301665(+)$1	1	148	152	11.9999
..))	chrX:153581430-153581664(-)$1	1	46	50	11.9999
))))	chr14:101200597-101200851(+)$1	1	47	51	11.9999
.)))	chr5:154179333-154179553(+)$1	1	23	27	11.9999
))))	chr19:11134093-11134303(+)$1	1	87	91	11.9999
((((	chr17:33998726-33999016(+)$1	1	47	51	11.9999
...(	chr16:30078879-30079082(+)$1	1	0	4	11.9999
))))	chr22:37425419-37425684(+)$1	1	67	71	11.9999
((((	chr16:30081108-30081379(+)$1	1	128	132	11.9999
(.((	chr6:33382633-33382897(+)$1	1	19	23	11.9999
).((	chr19:50904993-50905222(+)$1	1	60	64	11.9999
((((	chr17:79671585-79671846(+)$1	1	114	118	11.9999
(..(	chr3:53274207-53274449(-)$1	1	3	7	11.9999
....	chr19:49993391-49993623(+)$1	1	49	53	11.9999
.(((	chr7:98988538-98988785(+)$1	1	29	33	11.9999
))))	chr1:32694635-32694865(+)$1	1	107	111	11.9999
.(((	chr19:581463-581679(+)$1	1	44	48	11.9999
((((	chr16:30078673-30078906(+)$1	1	33	37	11.9999
)).)	chr22:21799176-21799399(+)$1	1	44	48	11.9999
))))	chr17:80042668-80042914(-)$1	1	206	210	11.9999
.(((	chr19:1619213-1619422(-)$1	1	7	11	11.9999
(.((	chr11:130013206-130013461(+)$1	1	176	180	11.9999

#PSSM
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	

#score	1007.9999999999995
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_UTR_m3_run2.nuc.txt

#NT
ACUUUUCUCU	chr2:128948101-128948401(+)$1	300	239	249	18.3333
CCAUUUCUCU	chr10:81073494-81073754(+)$1	260	1	11	16.1764
UCUUUCCUGU	chr10:82280223-82280481(+)$1	258	95	105	14.4117
CCAUUUCUCU	chr10:81073428-81073694(+)$1	266	67	77	16.1764
UCCUUCCUCU	chr17:76967391-76967607(-)$1	216	22	32	14.5098
uuuuuucucu	chr6:33268955-33269195(-)$1	240	204	214	17.3529
UGUUUUAUCU	chr7:94296471-94296695(+)$1	224	29	39	13.8235
UCUUUUCUCU	chr1:20808969-20809207(-)$1	238	31	41	21.1764
UCUUUGCUCU	chr3:23958537-23958765(+)$1	228	144	154	16.7647
GCGUUUCUCU	chr21:46270966-46271218(-)$1	252	74	84	15.6862
UCUUUUUUGU	chr7:6501608-6501858(-)$1	250	72	82	15.2941
UCUUUCUUCU	chr16:68225222-68225479(+)$1	257	28	38	13.8235
UACUUUCUUU	chr2:188329526-188329792(-)$1	266	7	17	12.3529
ucauuucugu	chr10:101611486-101611746(+)$1	260	180	190	15.5882
CCUUUUCUCU	chr8:22277343-22277578(+)$1	235	95	105	19.1176
UCCCUUCUCU	chr17:39847106-39847380(+)$1	274	26	36	14.2156
GCGUUUCUCU	chr21:46271019-46271236(-)$1	217	92	102	15.6862
UGUUUUAUCU	chr7:94296294-94296566(+)$1	272	206	216	13.8235
UCUUGUCUGU	chr1:116946959-116947201(+)$1	242	51	61	13.8235
UGUUUUUUCU	chr14:21819662-21819955(-)$1	293	225	235	14.2156
CCUUUUCUCU	chr8:22277292-22277543(+)$1	251	146	156	19.1176
UGUUUUCUUU	chr17:28793569-28793826(+)$1	257	46	56	15.0980
CCCUUUCUUU	chr10:101911291-101911543(-)$1	252	103	113	14.2156
GCUUUUCUCU	chr8:22278520-22278772(+)$1	252	232	242	18.9215
GCUUUUCUCU	chr8:22278712-22278948(+)$1	236	40	50	18.9215
CCCUUUCUCU	chr7:128410300-128410545(+)$1	245	28	38	16.5686
CCUUUUCUCC	chr17:6588654-6588925(-)$1	271	216	226	14.8039
UCUUUUCUCU	chr12:46752651-46752902(-)$1	251	77	87	21.1764
UCUUUUCUUA	chr5:71516464-71516838(-)$1	374	206	216	14.6078
UCUUUUAUUU	chr19:6414512-6414775(-)$1	263	66	76	15.1960
CCUUUUCUCA	chr5:78075994-78076250(-)$1	256	79	89	14.9019
UCUUUUCUGU	chr5:32228987-32229382(-)$1	395	152	162	18.5294
UCAUUUCUUU	chr20:48741368-48741623(-)$1	255	203	213	15.8823
GCUUUUCUCU	chr9:132901227-132901546(+)$1	319	138	148	18.9215
UCUUCUUUCU	chr2:216226175-216226396(-)$1	221	206	216	13.2352
UCUUUUCUUA	chr13:95055515-95055779(+)$1	264	13	23	14.6078
GUUUUUCUCU	chr12:53854748-53854957(+)$1	209	13	23	15.0980
GCUUUUCCCU	chr8:101716461-101716677(-)$1	216	157	167	14.1176
ucucuucucu	chr12:66218289-66218567(+)$1	278	199	209	16.7647
ACUGUUCUCU	chr16:70696328-70696558(-)$1	230	56	66	13.9215
UCCUUCCUCU	chr17:76967407-76967669(-)$1	262	84	94	14.5098
UUUGUUCUCU	chr4:74272260-74272480(+)$1	220	10	20	12.9411
UCAUUUCUCU	chr22:29190588-29190839(-)$1	251	33	43	18.2352
UCUUUUGUUU	chr16:2012052-2012303(-)$1	251	17	27	15.0000
UCUUUUUUUU	chr11:102269174-102269434(-)$1	260	94	104	15.5882
GCCUUUCUGU	chr16:450314-450606(+)$1	292	189	199	13.7254
UCUUUUUUUU	chr11:102269255-102269499(-)$1	244	159	169	15.5882
CAUUUUCUCU	chr2:102794538-102794847(+)$1	309	46	56	15.1960
CCCUUUCUCU	chr19:34890972-34891226(+)$1	254	2	12	16.5686
UCCUUUCUCC	chrX:118925435-118925671(-)$1	236	87	97	14.3137

#otherMatches

#Struct PSSM
H::::::JJJ	chr5:32125832-32126190(-)$1	358	9	19	15.2941
:::::ccc[d	chr2:128948101-128948401(+)$1	300	239	249	18.3333
::::::::::	chr10:81073494-81073754(+)$1	260	1	11	16.1764
eaooooooa]	chr10:82280223-82280481(+)$1	258	95	105	14.4117
bttttttttt	chr10:81073428-81073694(+)$1	266	67	77	16.1764
DDDD::ccc[	chr17:76967391-76967607(-)$1	216	22	32	14.5098
:::::cccmm	chr6:33268955-33269195(-)$1	240	204	214	17.3529
JJJ:::::::	chr7:94296471-94296695(+)$1	224	29	39	13.8235
::::::cccq	chr1:20808969-20809207(-)$1	238	31	41	21.1764
55555cccgg	chr3:23958537-23958765(+)$1	228	144	154	16.7647
wwwwwwwwwg	chr21:46270966-46271218(-)$1	252	74	84	15.6862
qqqqqqqddd	chr7:6501608-6501858(-)$1	250	72	82	15.2941
::::::DDDD	chr16:68225222-68225479(+)$1	257	28	38	13.8235
EEEE::::cc	chr2:188329526-188329792(-)$1	266	7	17	12.3529
EEEEZZZCCC	chr10:101611486-101611746(+)$1	260	180	190	15.5882
wwwwwwwwww	chr8:22277343-22277578(+)$1	235	95	105	19.1176
ooooddddcc	chr17:39847106-39847380(+)$1	274	26	36	14.2156
wwwwwwwwwg	chr21:46271019-46271236(-)$1	217	92	102	15.6862
~~IIIIIIII	chr7:94296294-94296566(+)$1	272	206	216	13.8235
eeee]ccc22	chr1:116946959-116947201(+)$1	242	51	61	13.8235
ZCCC@@@@@@	chr14:21819662-21819955(-)$1	293	225	235	14.2156
wwwwwwwwww	chr8:22277292-22277543(+)$1	251	146	156	19.1176
rrrrrrrrrg	chr17:28793569-28793826(+)$1	257	46	56	15.0980
DDLLLDDDDf	chr10:101911291-101911543(-)$1	252	103	113	14.2156
JJJJJJJJ::	chr8:22278520-22278772(+)$1	252	232	242	18.9215
::ffffffpp	chr8:22278712-22278948(+)$1	236	40	50	18.9215
eeee22dddd	chr7:128410300-128410545(+)$1	245	28	38	16.5686
:::::iiiii	chr17:6588654-6588925(-)$1	271	216	226	14.8039
========::	chr12:46752651-46752902(-)$1	251	77	87	21.1764
[ddddmmmmd	chr5:71516464-71516838(-)$1	374	206	216	14.6078
^^^^^^^^^^	chr19:6414512-6414775(-)$1	263	66	76	15.1960
::::::::::	chr5:78075994-78076250(-)$1	256	79	89	14.9019
vvvvvvvbb]	chr5:32228987-32229382(-)$1	395	152	162	18.5294
ccc:::::::	chr20:48741368-48741623(-)$1	255	203	213	15.8823
FZZZDDDDCC	chr9:132901227-132901546(+)$1	319	138	148	18.9215
hhhhhh::::	chr2:216226175-216226396(-)$1	221	206	216	13.2352
::::::::::	chr13:95055515-95055779(+)$1	264	13	23	14.6078
DDDD{HHHHH	chr12:53854748-53854957(+)$1	209	13	23	15.0980
bb55555eee	chr8:101716461-101716677(-)$1	216	157	167	14.1176
:=========	chr12:66218289-66218567(+)$1	278	199	209	16.7647
ffff:GGGGG	chr16:70696328-70696558(-)$1	230	56	66	13.9215
dddd333fff	chr17:76967407-76967669(-)$1	262	84	94	14.5098
IIIIII::::	chr4:74272260-74272480(+)$1	220	10	20	12.9411
gggggg::::	chr22:29190588-29190839(-)$1	251	33	43	18.2352
dddd&&&&&&	chr16:2012052-2012303(-)$1	251	17	27	15.0000
iiiivvvvvv	chr11:102269174-102269434(-)$1	260	94	104	15.5882
dd####bbqq	chr16:450314-450606(+)$1	292	189	199	13.7254
c::::::::e	chr11:102269255-102269499(-)$1	244	159	169	15.5882
CCNNNNNHHH	chr2:102794538-102794847(+)$1	309	46	56	15.1960
::::::::::	chr19:34890972-34891226(+)$1	254	2	12	16.5686
KAMMMMFFFF	chrX:118925435-118925671(-)$1	236	87	97	14.3137

#DB
(......(((	chr5:32125832-32126190(-)$1	1	9	19	15.2941
.....(((.(	chr2:128948101-128948401(+)$1	1	239	249	18.3333
..........	chr10:81073494-81073754(+)$1	1	1	11	16.1764
((......).	chr10:82280223-82280481(+)$1	1	95	105	14.4117
(.........	chr10:81073428-81073694(+)$1	1	67	77	16.1764
((((..(((.	chr17:76967391-76967607(-)$1	1	22	32	14.5098
.....(((..	chr6:33268955-33269195(-)$1	1	204	214	17.3529
(((.......	chr7:94296471-94296695(+)$1	1	29	39	13.8235
......(((.	chr1:20808969-20809207(-)$1	1	31	41	21.1764
.....)))))	chr3:23958537-23958765(+)$1	1	144	154	16.7647
.........)	chr21:46270966-46271218(-)$1	1	74	84	15.6862
.......)))	chr7:6501608-6501858(-)$1	1	72	82	15.2941
......((((	chr16:68225222-68225479(+)$1	1	28	38	13.8235
((((....((	chr2:188329526-188329792(-)$1	1	7	17	12.3529
))))...)))	chr10:101611486-101611746(+)$1	1	180	190	15.5882
..........	chr8:22277343-22277578(+)$1	1	95	105	19.1176
....))))))	chr17:39847106-39847380(+)$1	1	26	36	14.2156
.........)	chr21:46271019-46271236(-)$1	1	92	102	15.6862
..))))))))	chr7:94296294-94296566(+)$1	1	206	216	13.8235
)))).)))..	chr1:116946959-116947201(+)$1	1	51	61	13.8235
.)))......	chr14:21819662-21819955(-)$1	1	225	235	14.2156
..........	chr8:22277292-22277543(+)$1	1	146	156	19.1176
.........)	chr17:28793569-28793826(+)$1	1	46	56	15.0980
((...(((((	chr10:101911291-101911543(-)$1	1	103	113	14.2156
))))))))..	chr8:22278520-22278772(+)$1	1	232	242	18.9215
..((((((..	chr8:22278712-22278948(+)$1	1	40	50	18.9215
))))..))))	chr7:128410300-128410545(+)$1	1	28	38	16.5686
.....(((((	chr17:6588654-6588925(-)$1	1	216	226	14.8039
))))))))..	chr12:46752651-46752902(-)$1	1	77	87	21.1764
.((((....)	chr5:71516464-71516838(-)$1	1	206	216	14.6078
..........	chr19:6414512-6414775(-)$1	1	66	76	15.1960
..........	chr5:78075994-78076250(-)$1	1	79	89	14.9019
.......)).	chr5:32228987-32229382(-)$1	1	152	162	18.5294
))).......	chr20:48741368-48741623(-)$1	1	203	213	15.8823
)...))))))	chr9:132901227-132901546(+)$1	1	138	148	18.9215
))))))....	chr2:216226175-216226396(-)$1	1	206	216	13.2352
..........	chr13:95055515-95055779(+)$1	1	13	23	14.6078
((((.(((((	chr12:53854748-53854957(+)$1	1	13	23	15.0980
)).....)))	chr8:101716461-101716677(-)$1	1	157	167	14.1176
.(((((((((	chr12:66218289-66218567(+)$1	1	199	209	16.7647
)))).)))))	chr16:70696328-70696558(-)$1	1	56	66	13.9215
))))...)))	chr17:76967407-76967669(-)$1	1	84	94	14.5098
((((((....	chr4:74272260-74272480(+)$1	1	10	20	12.9411
))))))....	chr22:29190588-29190839(-)$1	1	33	43	18.2352
((((......	chr16:2012052-2012303(-)$1	1	17	27	15.0000
((((......	chr11:102269174-102269434(-)$1	1	94	104	15.5882
((....((..	chr16:450314-450606(+)$1	1	189	199	13.7254
)........(	chr11:102269255-102269499(-)$1	1	159	169	15.5882
((.....(((	chr2:102794538-102794847(+)$1	1	46	56	15.1960
..........	chr19:34890972-34891226(+)$1	1	2	12	16.5686
.(....((((	chrX:118925435-118925671(-)$1	1	87	97	14.3137

#PSSM
U : 0.54	C : 0.19	G : 0.15	u : 0.05	A : 0.03	
C : 0.78	G : 0.07	A : 0.03	c : 0.03	U : 0.03	u : 0.01	
U : 0.64	C : 0.17	A : 0.07	u : 0.03	G : 0.03	a : 0.01	
U : 0.88	u : 0.03	G : 0.03	C : 0.01	c : 0.01	
U : 0.90	u : 0.05	G : 0.01	C : 0.01	
U : 0.84	C : 0.07	u : 0.05	G : 0.01	
C : 0.72	U : 0.13	c : 0.05	A : 0.05	G : 0.01	
U : 0.92	u : 0.05	C : 0.01	
C : 0.62	U : 0.19	G : 0.11	c : 0.03	g : 0.01	
U : 0.84	u : 0.05	A : 0.05	C : 0.03	

#score	803.9215686274515
#seq	51
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_transcript_m1_run1.nuc.txt

#NT
AGGAGGAUG	chr16:89363880-89364175(-)$1	295	106	115	16.7777
AGGAGUGGG	chr16:89483959-89484234(-)$1	275	234	243	14.5555
AGGAUGGUG	chr16:31198562-31198847(+)$1	285	43	52	18.0000
UGGAGGGGG	chr19:28919972-28920263(-)$1	291	98	107	14.6666
GGGAGGGGG	chr20:33508530-33508861(+)$1	331	64	73	14.7777
AGGAGAGGG	chr19:34874139-34874369(+)$1	230	50	59	14.6666
aggaaggug	chr15:66922890-66923180(+)$1	290	92	101	18.5555
AGAAGGGUG	chr1:93297810-93298080(+)$1	270	101	110	16.7777
AGGAAGGUG	chr10:3170443-3170701(+)$1	258	183	192	18.5555
GGGAGGGGG	chr2:132056449-132056718(+)$1	269	64	73	14.7777
UGGAGGGUG	chr9:139620915-139621180(-)$1	265	112	121	17.3333
aggagguug	chr16:89477796-89478073(-)$1	277	127	136	17.1111
AGGAAGGUG	chrX:77380557-77380865(+)$1	308	46	55	18.5555
AGGAGGUUG	chr16:1795005-1795278(+)$1	273	74	83	17.1111
AGGAGGGUG	chr17:80419979-80420282(+)$1	303	183	192	21.1111
AGGAAAGUG	chr1:198126783-198127057(+)$1	274	63	72	14.7777
aggagggug	chr15:38776589-38776843(+)$1	254	87	96	21.1111
uggaggggg	chr1:54837909-54838196(-)$1	287	90	99	14.6666
aggagggug	chr11:3070160-3070409(-)$1	249	112	121	21.1111
AGCAGGGUG	chr22:49932586-49932832(-)$1	246	93	102	16.7777
AGGAAGGGG	chr1:2198680-2198956(+)$1	276	139	148	15.8888
AGGAAGGUG	chr11:65194715-65194965(+)$1	250	39	48	18.5555
AGGAGGUUG	chr16:89360643-89360877(-)$1	234	212	221	17.1111
CGGAGGGUG	chr22:50050001-50050245(-)$1	244	80	89	17.1111
AGGAGGGUC	chr1:228276760-228277022(+)$1	262	94	103	16.4444
AGGAUGGUG	chr7:99001411-99001673(-)$1	262	186	195	18.0000
AGGAGGGUG	chr1:155283137-155283370(+)$1	233	43	52	21.1111
AGGAGAGUG	chr5:138635346-138635665(+)$1	319	64	73	17.3333
AGGUGGGUG	chr22:23540403-23540641(+)$1	238	7	16	16.3333
AGGAGGGUU	chr11:66391338-66391604(+)$1	266	220	229	16.4444
AGGAAGGAG	chr17:80421492-80421781(+)$1	289	101	110	15.5555
aggauggag	chr22:26966499-26966750(-)$1	251	1	10	15.0000
GGGAAGGUG	chr19:34878763-34879033(+)$1	270	18	27	14.8888
AGGAGGUUG	chr19:34882998-34883269(+)$1	271	94	103	17.1111
AGGAGGGAG	chr22:49982887-49983155(-)$1	268	81	90	18.1111
agaagggug	chr17:41466242-41466502(-)$1	260	63	72	16.7777
AGGAGGGUG	chr9:136137586-136137861(-)$1	275	249	258	21.1111
AGGAAGGGG	chr5:34190991-34191204(-)$1	213	68	77	15.8888
aggagggug	chr16:81516924-81517191(+)$1	267	61	70	21.1111
aggauggug	chr19:3390803-3391073(+)$1	270	128	137	18.0000
AGCAGGGUG	chr4:763941-764198(-)$1	257	35	44	16.7777
AGGAGUGUG	chr4:10094446-10094720(-)$1	274	157	166	17.2222
AGGAGUGUG	chr7:158702535-158702836(+)$1	301	90	99	17.2222
GGGAGGGAG	chr21:46364441-46364710(+)$1	269	122	131	14.4444

#otherMatches

#Struct PSSM
FF{DDDDii	chr11:587577-587847(+)$1	270	111	120	14.3333
ggggggg]b	chr16:89363880-89364175(-)$1	295	106	115	16.7777
======[bb	chr16:89483959-89484234(-)$1	275	234	243	14.5555
&&&&&ccc[	chr16:31198562-31198847(+)$1	285	43	52	18.0000
{HHHHHHHH	chr19:28919972-28920263(-)$1	291	98	107	14.6666
ffffffBBK	chr20:33508530-33508861(+)$1	331	64	73	14.7777
:dddda[ee	chr19:34874139-34874369(+)$1	230	50	59	14.6666
(((((dddd	chr15:66922890-66923180(+)$1	290	92	101	18.5555
"""ccc[bb	chr1:93297810-93298080(+)$1	270	101	110	16.7777
dddoooooo	chr10:3170443-3170701(+)$1	258	183	192	18.5555
ffffff[cc	chr2:132056449-132056718(+)$1	269	64	73	14.7777
ggnnnnngg	chr9:139620915-139621180(-)$1	265	112	121	17.3333
========s	chr16:89477796-89478073(-)$1	277	127	136	17.1111
::::::::=	chrX:77380557-77380865(+)$1	308	46	55	18.5555
SSSSDDDDM	chr16:1795005-1795278(+)$1	273	74	83	17.1111
ma333ffff	chr17:80419979-80420282(+)$1	303	183	192	21.1111
$$$$$dddd	chr1:198126783-198127057(+)$1	274	63	72	14.7777
:::::::::	chr15:38776589-38776843(+)$1	254	87	96	21.1111
HHHHHHHOO	chr1:54837909-54838196(-)$1	287	90	99	14.6666
Da[a[a[cc	chr11:3070160-3070409(-)$1	249	112	121	21.1111
f333ddddf	chr22:49932586-49932832(-)$1	246	93	102	16.7777
{IIIIIIII	chr1:2198680-2198956(+)$1	276	139	148	15.8888
IIIIIII:C	chr11:65194715-65194965(+)$1	250	39	48	18.5555
EEE______	chr16:89360643-89360877(-)$1	234	212	221	17.1111
ff22dddd2	chr22:50050001-50050245(-)$1	244	80	89	17.1111
JJJJJJJJ:	chr1:228276760-228277022(+)$1	262	94	103	16.4444
4dddd]ccc	chr7:99001411-99001673(-)$1	262	186	195	18.0000
nnnnddddd	chr1:155283137-155283370(+)$1	233	43	52	21.1111
D::eeeee%	chr5:138635346-138635665(+)$1	319	64	73	17.3333
BB:dddd[c	chr22:23540403-23540641(+)$1	238	7	16	16.3333
:::ffffff	chr11:66391338-66391604(+)$1	266	220	229	16.4444
!!bb%%%%%	chr17:80421492-80421781(+)$1	289	101	110	15.5555
::::::::F	chr22:26966499-26966750(-)$1	251	1	10	15.0000
nnnnccc:C	chr19:34878763-34879033(+)$1	270	18	27	14.8888
eee[ddddo	chr19:34882998-34883269(+)$1	271	94	103	17.1111
f]ggggggg	chr22:49982887-49983155(-)$1	268	81	90	18.1111
mmmmggggg	chr17:41466242-41466502(-)$1	260	63	72	16.7777
gg!!a[bbn	chr9:136137586-136137861(-)$1	275	249	258	21.1111
ccc"""ggg	chr5:34190991-34191204(-)$1	213	68	77	15.8888
HHHHHHH{B	chr16:81516924-81517191(+)$1	267	61	70	21.1111
a[ccc[bbm	chr19:3390803-3391073(+)$1	270	128	137	18.0000
$$$$eeeee	chr4:763941-764198(-)$1	257	35	44	16.7777
[bb[bb[bb	chr4:10094446-10094720(-)$1	274	157	166	17.2222
b[ffffff!	chr7:158702535-158702836(+)$1	301	90	99	17.2222
ddffffff]	chr21:46364441-46364710(+)$1	269	122	131	14.4444

#DB
((.((((((	chr11:587577-587847(+)$1	1	111	120	14.3333
))))))).)	chr16:89363880-89364175(-)$1	1	106	115	16.7777
((((((.((	chr16:89483959-89484234(-)$1	1	234	243	14.5555
.....(((.	chr16:31198562-31198847(+)$1	1	43	52	18.0000
.((((((((	chr19:28919972-28920263(-)$1	1	98	107	14.6666
))))))((.	chr20:33508530-33508861(+)$1	1	64	73	14.7777
.(((((.((	chr19:34874139-34874369(+)$1	1	50	59	14.6666
.....((((	chr15:66922890-66923180(+)$1	1	92	101	18.5555
...(((.((	chr1:93297810-93298080(+)$1	1	101	110	16.7777
(((......	chr10:3170443-3170701(+)$1	1	183	192	18.5555
((((((.((	chr2:132056449-132056718(+)$1	1	64	73	14.7777
((.....))	chr9:139620915-139621180(-)$1	1	112	121	17.3333
((((((((.	chr16:89477796-89478073(-)$1	1	127	136	17.1111
........(	chrX:77380557-77380865(+)$1	1	46	55	18.5555
....((((.	chr16:1795005-1795278(+)$1	1	74	83	17.1111
.)...))))	chr17:80419979-80420282(+)$1	1	183	192	21.1111
.....((((	chr1:198126783-198127057(+)$1	1	63	72	14.7777
.........	chr15:38776589-38776843(+)$1	1	87	96	21.1111
(((((((..	chr1:54837909-54838196(-)$1	1	90	99	14.6666
((.(.(.((	chr11:3070160-3070409(-)$1	1	112	121	21.1111
)...))))(	chr22:49932586-49932832(-)$1	1	93	102	16.7777
.((((((((	chr1:2198680-2198956(+)$1	1	139	148	15.8888
(((((((.(	chr11:65194715-65194965(+)$1	1	39	48	18.5555
)))......	chr16:89360643-89360877(-)$1	1	212	221	17.1111
))..)))).	chr22:50050001-50050245(-)$1	1	80	89	17.1111
((((((((.	chr1:228276760-228277022(+)$1	1	94	103	16.4444
.)))).)))	chr7:99001411-99001673(-)$1	1	186	195	18.0000
....)))))	chr1:155283137-155283370(+)$1	1	43	52	21.1111
(..(((((.	chr5:138635346-138635665(+)$1	1	64	73	17.3333
((.((((.(	chr22:23540403-23540641(+)$1	1	7	16	16.3333
...((((((	chr11:66391338-66391604(+)$1	1	220	229	16.4444
..((.....	chr17:80421492-80421781(+)$1	1	101	110	15.5555
........(	chr22:26966499-26966750(-)$1	1	1	10	15.0000
....))).(	chr19:34878763-34879033(+)$1	1	18	27	14.8888
(((.((((.	chr19:34882998-34883269(+)$1	1	94	103	17.1111
).)))))))	chr22:49982887-49983155(-)$1	1	81	90	18.1111
....)))))	chr17:41466242-41466502(-)$1	1	63	72	16.7777
((..(.((.	chr9:136137586-136137861(-)$1	1	249	258	21.1111
(((...(((	chr5:34190991-34191204(-)$1	1	68	77	15.8888
(((((((.(	chr16:81516924-81517191(+)$1	1	61	70	21.1111
(.(((.((.	chr19:3390803-3391073(+)$1	1	128	137	18.0000
....(((((	chr4:763941-764198(-)$1	1	35	44	16.7777
.((.((.((	chr4:10094446-10094720(-)$1	1	157	166	17.2222
(.((((((.	chr7:158702535-158702836(+)$1	1	90	99	17.2222
)))))))).	chr21:46364441-46364710(+)$1	1	122	131	14.4444

#PSSM
A : 0.64	a : 0.17	G : 0.08	U : 0.04	u : 0.02	C : 0.02	
G : 0.80	g : 0.20	
G : 0.73	g : 0.17	C : 0.04	A : 0.02	a : 0.02	
A : 0.77	a : 0.20	U : 0.02	
G : 0.57	A : 0.17	g : 0.13	U : 0.04	u : 0.04	a : 0.02	
G : 0.64	g : 0.20	A : 0.08	U : 0.06	
G : 0.71	g : 0.17	U : 0.06	A : 0.02	u : 0.02	
U : 0.55	G : 0.15	u : 0.15	A : 0.08	g : 0.02	a : 0.02	
G : 0.75	g : 0.20	C : 0.02	U : 0.02	

#score	769.6666666666667
#seq	45
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_transcript_m3_run2.nuc.txt

#NT
CCUCC	chr16:89334960-89335239(-)$1	279	133	138	15.0000
ccucc	chr14:24031716-24031938(-)$1	222	50	55	15.0000
CCUCC	chr22:38014334-38014578(+)$1	244	7	12	15.0000
CCUCC	chr17:79681821-79682104(+)$1	283	73	78	15.0000
CCUCC	chr16:22319295-22319544(+)$1	249	164	169	15.0000
CCUCC	chr16:555346-555621(+)$1	275	98	103	15.0000
CCUCC	chr9:140347516-140347775(-)$1	259	22	27	15.0000
CCUCC	chr14:24032957-24033257(-)$1	300	280	285	15.0000
CCUCC	chr22:50898083-50898362(-)$1	279	163	168	15.0000
CCUCC	chr19:50363087-50363363(+)$1	276	16	21	15.0000
CCUCC	chr21:47615576-47615830(-)$1	254	153	158	15.0000
CCUCC	chr22:46751168-46751423(+)$1	255	247	252	15.0000
CCUCC	chr6:31748815-31749053(-)$1	238	133	138	15.0000
CCUCC	chr19:6710757-6711007(-)$1	250	41	46	15.0000
CCUCC	chr7:99627707-99627959(+)$1	252	22	27	15.0000
CCUCC	chr2:54874061-54874316(+)$1	255	114	119	15.0000
CCUCC	chr11:823498-823774(+)$1	276	14	19	15.0000
CCUCC	chr19:10270503-10270762(-)$1	259	170	175	15.0000
CCUCC	chr19:8315783-8316068(+)$1	285	49	54	15.0000
CCUCC	chr12:125298836-125299102(-)$1	266	34	39	15.0000
CCUCC	chr1:226046939-226047221(-)$1	282	193	198	15.0000
CCUCC	chr9:130880216-130880556(-)$1	340	19	24	15.0000
CCUCC	chr2:11732735-11733003(+)$1	268	29	34	15.0000
CCUCC	chr22:50657240-50657507(-)$1	267	15	20	15.0000
CCUCC	chr17:40065245-40065516(-)$1	271	181	186	15.0000
ccucc	chr14:75572598-75572825(-)$1	227	3	8	15.0000
CCUCC	chr16:30104014-30104271(-)$1	257	140	145	15.0000
CCUCC	chr20:62371579-62371829(+)$1	250	101	106	15.0000
CCUCC	chr3:52832075-52832345(+)$1	270	14	19	15.0000
ccucc	chr9:136674270-136674522(-)$1	252	7	12	15.0000
CCUCC	chr11:64011284-64011540(+)$1	256	82	87	15.0000
CCUCC	chr19:1823700-1823960(-)$1	260	71	76	15.0000
CCUCC	chr1:155880509-155880765(-)$1	256	154	159	15.0000
CCUCC	chr19:2111245-2111488(-)$1	243	174	179	15.0000
CCUCC	chr6:31111107-31111357(-)$1	250	14	19	15.0000
CCUCC	chr19:1270989-1271233(+)$1	244	93	98	15.0000
CCUCC	chr6:43006312-43006591(-)$1	279	98	103	15.0000
CCUCC	chr11:70280926-70281161(+)$1	235	68	73	15.0000
CCUCC	chr19:2271196-2271466(+)$1	270	199	204	15.0000
CCUCC	chr19:2189571-2189817(+)$1	246	98	103	15.0000
CCUCC	chr20:36022102-36022372(+)$1	270	75	80	15.0000
CCUCC	chr19:48258457-48258703(+)$1	246	40	45	15.0000
CCUCC	chr1:27326124-27326364(+)$1	240	88	93	15.0000
CCUCC	chr2:128180169-128180410(+)$1	241	222	227	15.0000
CCUCC	chr17:79866806-79867050(-)$1	244	76	81	15.0000
CCUCC	chr14:103570103-103570342(+)$1	239	223	228	15.0000
CCUCC	chr10:1052801-1053055(+)$1	254	84	89	15.0000
CCUCC	chr8:125568541-125568813(-)$1	272	116	121	15.0000
CCUCC	chr20:35467693-35468028(-)$1	335	131	136	15.0000
CCUCC	chr2:101618977-101619226(+)$1	249	164	169	15.0000
CCUCC	chr17:8065591-8065861(-)$1	270	61	66	15.0000
CCUCC	chr19:1255256-1255513(+)$1	257	243	248	15.0000
CCUCC	chr20:34327375-34327599(-)$1	224	176	181	15.0000
CCUCC	chr13:113512281-113512530(+)$1	249	163	168	15.0000
CCUCC	chr17:73625464-73625699(-)$1	235	33	38	15.0000

#otherMatches

#Struct PSSM
:::::	chr11:69458444-69458677(+)$1	233	4	9	15.0000
BBKKD	chr16:89334960-89335239(-)$1	279	133	138	15.0000
::::f	chr14:24031716-24031938(-)$1	222	50	55	15.0000
:::::	chr22:38014334-38014578(+)$1	244	7	12	15.0000
ggggg	chr17:79681821-79682104(+)$1	283	73	78	15.0000
cc]ee	chr16:22319295-22319544(+)$1	249	164	169	15.0000
bhhhh	chr16:555346-555621(+)$1	275	98	103	15.0000
hhhhh	chr9:140347516-140347775(-)$1	259	22	27	15.0000
JJJJJ	chr14:24032957-24033257(-)$1	300	280	285	15.0000
ooccc	chr22:50898083-50898362(-)$1	279	163	168	15.0000
LLBBK	chr19:50363087-50363363(+)$1	276	16	21	15.0000
CC}HH	chr21:47615576-47615830(-)$1	254	153	158	15.0000
~A}EE	chr22:46751168-46751423(+)$1	255	247	252	15.0000
dddd]	chr6:31748815-31749053(-)$1	238	133	138	15.0000
GGG::	chr19:6710757-6711007(-)$1	250	41	46	15.0000
EEEEE	chr7:99627707-99627959(+)$1	252	22	27	15.0000
::iii	chr2:54874061-54874316(+)$1	255	114	119	15.0000
B{EEE	chr11:823498-823774(+)$1	276	14	19	15.0000
qqqqq	chr19:10270503-10270762(-)$1	259	170	175	15.0000
HHBBB	chr19:8315783-8316068(+)$1	285	49	54	15.0000
fffff	chr12:125298836-125299102(-)$1	266	34	39	15.0000
dddff	chr1:226046939-226047221(-)$1	282	193	198	15.0000
MMMMI	chr9:130880216-130880556(-)$1	340	19	24	15.0000
d::::	chr2:11732735-11733003(+)$1	268	29	34	15.0000
DD{CC	chr22:50657240-50657507(-)$1	267	15	20	15.0000
EEE}A	chr17:40065245-40065516(-)$1	271	181	186	15.0000
::eee	chr14:75572598-75572825(-)$1	227	3	8	15.0000
!!ddd	chr16:30104014-30104271(-)$1	257	140	145	15.0000
bb:II	chr20:62371579-62371829(+)$1	250	101	106	15.0000
[eeee	chr3:52832075-52832345(+)$1	270	14	19	15.0000
CC{BB	chr9:136674270-136674522(-)$1	252	7	12	15.0000
eee33	chr11:64011284-64011540(+)$1	256	82	87	15.0000
[bb!!	chr19:1823700-1823960(-)$1	260	71	76	15.0000
cc"""	chr1:155880509-155880765(-)$1	256	154	159	15.0000
E____	chr19:2111245-2111488(-)$1	243	174	179	15.0000
EEEEE	chr6:31111107-31111357(-)$1	250	14	19	15.0000
hhhhh	chr19:1270989-1271233(+)$1	244	93	98	15.0000
:::::	chr6:43006312-43006591(-)$1	279	98	103	15.0000
fffff	chr11:70280926-70281161(+)$1	235	68	73	15.0000
ddd55	chr19:2271196-2271466(+)$1	270	199	204	15.0000
qqqqq	chr19:2189571-2189817(+)$1	246	98	103	15.0000
:::::	chr20:36022102-36022372(+)$1	270	75	80	15.0000
!!bb[	chr19:48258457-48258703(+)$1	246	40	45	15.0000
]ffff	chr1:27326124-27326364(+)$1	240	88	93	15.0000
ddd==	chr2:128180169-128180410(+)$1	241	222	227	15.0000
dd333	chr17:79866806-79867050(-)$1	244	76	81	15.0000
FF}DD	chr14:103570103-103570342(+)$1	239	223	228	15.0000
fffff	chr10:1052801-1053055(+)$1	254	84	89	15.0000
]ffff	chr8:125568541-125568813(-)$1	272	116	121	15.0000
dd]ee	chr20:35467693-35468028(-)$1	335	131	136	15.0000
ffffa	chr2:101618977-101619226(+)$1	249	164	169	15.0000
fffff	chr17:8065591-8065861(-)$1	270	61	66	15.0000
::::D	chr19:1255256-1255513(+)$1	257	243	248	15.0000
bbooo	chr20:34327375-34327599(-)$1	224	176	181	15.0000
###cc	chr13:113512281-113512530(+)$1	249	163	168	15.0000
C::::	chr17:73625464-73625699(-)$1	235	33	38	15.0000

#DB
.....	chr11:69458444-69458677(+)$1	1	4	9	15.0000
((..(	chr16:89334960-89335239(-)$1	1	133	138	15.0000
....(	chr14:24031716-24031938(-)$1	1	50	55	15.0000
.....	chr22:38014334-38014578(+)$1	1	7	12	15.0000
)))))	chr17:79681821-79682104(+)$1	1	73	78	15.0000
)).))	chr16:22319295-22319544(+)$1	1	164	169	15.0000
(((((	chr16:555346-555621(+)$1	1	98	103	15.0000
(((((	chr9:140347516-140347775(-)$1	1	22	27	15.0000
)))))	chr14:24032957-24033257(-)$1	1	280	285	15.0000
..)))	chr22:50898083-50898362(-)$1	1	163	168	15.0000
..((.	chr19:50363087-50363363(+)$1	1	16	21	15.0000
)).))	chr21:47615576-47615830(-)$1	1	153	158	15.0000
.).))	chr22:46751168-46751423(+)$1	1	247	252	15.0000
)))).	chr6:31748815-31749053(-)$1	1	133	138	15.0000
(((..	chr19:6710757-6711007(-)$1	1	41	46	15.0000
(((((	chr7:99627707-99627959(+)$1	1	22	27	15.0000
..(((	chr2:54874061-54874316(+)$1	1	114	119	15.0000
(.(((	chr11:823498-823774(+)$1	1	14	19	15.0000
.....	chr19:10270503-10270762(-)$1	1	170	175	15.0000
(((((	chr19:8315783-8316068(+)$1	1	49	54	15.0000
(((((	chr12:125298836-125299102(-)$1	1	34	39	15.0000
(((((	chr1:226046939-226047221(-)$1	1	193	198	15.0000
....(	chr9:130880216-130880556(-)$1	1	19	24	15.0000
)....	chr2:11732735-11733003(+)$1	1	29	34	15.0000
((.((	chr22:50657240-50657507(-)$1	1	15	20	15.0000
))).)	chr17:40065245-40065516(-)$1	1	181	186	15.0000
..(((	chr14:75572598-75572825(-)$1	1	3	8	15.0000
..(((	chr16:30104014-30104271(-)$1	1	140	145	15.0000
)).))	chr20:62371579-62371829(+)$1	1	101	106	15.0000
.((((	chr3:52832075-52832345(+)$1	1	14	19	15.0000
((.((	chr9:136674270-136674522(-)$1	1	7	12	15.0000
)))..	chr11:64011284-64011540(+)$1	1	82	87	15.0000
.((..	chr19:1823700-1823960(-)$1	1	71	76	15.0000
((...	chr1:155880509-155880765(-)$1	1	154	159	15.0000
)....	chr19:2111245-2111488(-)$1	1	174	179	15.0000
(((((	chr6:31111107-31111357(-)$1	1	14	19	15.0000
)))))	chr19:1270989-1271233(+)$1	1	93	98	15.0000
.....	chr6:43006312-43006591(-)$1	1	98	103	15.0000
(((((	chr11:70280926-70281161(+)$1	1	68	73	15.0000
)))..	chr19:2271196-2271466(+)$1	1	199	204	15.0000
.....	chr19:2189571-2189817(+)$1	1	98	103	15.0000
.....	chr20:36022102-36022372(+)$1	1	75	80	15.0000
..((.	chr19:48258457-48258703(+)$1	1	40	45	15.0000
.))))	chr1:27326124-27326364(+)$1	1	88	93	15.0000
)))))	chr2:128180169-128180410(+)$1	1	222	227	15.0000
))...	chr17:79866806-79867050(-)$1	1	76	81	15.0000
)).))	chr14:103570103-103570342(+)$1	1	223	228	15.0000
(((((	chr10:1052801-1053055(+)$1	1	84	89	15.0000
.))))	chr8:125568541-125568813(-)$1	1	116	121	15.0000
)).))	chr20:35467693-35468028(-)$1	1	131	136	15.0000
)))))	chr2:101618977-101619226(+)$1	1	164	169	15.0000
(((((	chr17:8065591-8065861(-)$1	1	61	66	15.0000
....)	chr19:1255256-1255513(+)$1	1	243	248	15.0000
((...	chr20:34327375-34327599(-)$1	1	176	181	15.0000
...((	chr13:113512281-113512530(+)$1	1	163	168	15.0000
(....	chr17:73625464-73625699(-)$1	1	33	38	15.0000

#PSSM
C : 0.94	c : 0.05	
C : 0.94	c : 0.05	
U : 0.94	u : 0.05	
C : 0.94	c : 0.05	
C : 0.94	c : 0.05	

#score	840.0000000000005
#seq	56
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_transcript_m2_run2.nuc.txt

#NT
GGAGAAGGAG	chr2:54856094-54856353(+)$1	259	141	151	19.2307
ggaggaggag	chr2:227664132-227664389(-)$1	257	1	11	23.2692
AGAGGAAGAG	chr10:120809210-120809438(-)$1	228	83	93	16.6346
GGAAGAGGAG	chr16:88851342-88851698(-)$1	356	199	209	19.5192
ggaagaagag	chr5:179151560-179151846(+)$1	286	159	169	16.1538
ggaggaggag	chr12:6878990-6879262(+)$1	272	95	105	23.2692
GGAGGCGGGG	chr2:61764493-61764743(-)$1	250	237	247	15.9615
ggACGCGGAG	chr16:447132-447396(+)$1	264	207	217	15.3846
GGAGGAAGAG	chr17:27003135-27003439(+)$1	304	123	133	19.9038
GGUGGACGAG	chr17:80193757-80193985(+)$1	228	141	151	15.6730
GCAGCAGGAG	chr17:48784871-48785244(-)$1	373	255	265	15.3846
GAAGGAGGAG	chr17:37360677-37361017(+)$1	340	172	182	19.2307
GGAGCAGGAG	chr9:137241144-137241413(+)$1	269	99	109	19.6153
AGAGGAAGAG	chr10:120809328-120809600(-)$1	272	245	255	16.6346
ggcggcggag	chr10:105614882-105615357(-)$1	475	43	53	15.9615
gaaggaagag	chr1:87380266-87380599(+)$1	333	106	116	15.8653
ggAGGCGGAG	chr19:18392132-18392382(-)$1	250	77	87	19.3269
GGCGGAGGAG	chr17:48943258-48943624(-)$1	366	265	275	19.9038
GGUGAAGGAG	chr15:90328470-90328821(-)$1	351	187	197	15.6730
GGCGGAGGAG	chr19:45411715-45412023(+)$1	308	146	156	19.9038
ggaggaggcg	chr6:34664390-34664660(-)$1	270	21	31	19.5192
ggaggaggcg	chr1:27022878-27023116(+)$1	238	111	121	19.5192
AGAGGAGGGG	chr11:2152407-2152614(-)$1	207	125	135	16.6346
ggagccggag	chr10:102759453-102759750(+)$1	297	175	185	15.6730
UGAGGAGGAG	chr6:44219738-44220025(+)$1	287	172	182	19.5192
gGAGGAGGAG	chr10:98346576-98346890(-)$1	314	252	262	23.2692
GGAGCAGGAG	chr2:232576572-232576794(+)$1	222	41	51	19.6153
GGAGGAAGGG	chr14:31676503-31676798(-)$1	295	41	51	16.5384
CGUGGAGGAG	chr6:167369867-167370136(-)$1	269	142	152	15.9615
gagggaggag	chr7:134632375-134632621(+)$1	246	63	73	15.3846
UGAAGAGGAG	chr1:156713841-156714162(-)$1	321	179	189	15.7692
GGAGGAGGAG	chr19:14200626-14200893(-)$1	267	173	183	23.2692
GGAGGAGAAG	chr4:76580159-76580533(-)$1	374	196	206	18.4615
GGCGGAGGAG	chr22:36685224-36685444(-)$1	220	106	116	19.9038
GGAGGAAGAG	chr20:278121-278416(+)$1	295	126	136	19.9038
cgaggaagag	chr17:19015775-19016049(-)$1	274	178	188	16.1538
ggcggAGGAG	chr1:150947128-150947402(-)$1	274	153	163	19.9038
GAAAGAGGAG	chr9:131590918-131591210(-)$1	292	72	82	15.4807
GGAGGAGGAG	chr20:3175857-3176095(-)$1	238	98	108	23.2692
GGACGAGGCG	chr19:55628673-55629013(-)$1	340	293	303	15.5769
GGUGGAGGAG	chr6:114181337-114181595(+)$1	258	207	217	19.7115
ggaagaggag	chr17:4575245-4575587(-)$1	342	13	23	19.5192
AGAGGUGGAG	chr15:72501951-72502233(-)$1	282	44	54	15.6730
AGAGGAGGGG	chr11:2152312-2152542(-)$1	230	53	63	16.6346
AGAGGAGGGG	chr11:2152414-2152619(-)$1	205	130	140	16.6346
GCAGGAGGGG	chr11:61106639-61106907(+)$1	268	22	32	15.6730
GGAGGAGGAG	chr16:9057069-9057340(-)$1	271	74	84	23.2692
GGACCAGGAG	chr21:47565094-47565375(-)$1	281	148	158	15.6730
AGAGGAGGGG	chr11:2152375-2152607(-)$1	232	118	128	16.6346
ggagcaggag	chr19:953968-954235(+)$1	267	115	125	19.6153
GGAGGAGGAG	chr20:40161613-40162071(-)$1	458	84	94	23.2692

#otherMatches

#Struct PSSM
iiiiiiii[a	chr22:36685150-36685424(-)$1	274	86	96	19.9038
eee::ddddn	chr2:54856094-54856353(+)$1	259	141	151	19.2307
CC{BB{FFFF	chr2:227664132-227664389(-)$1	257	1	11	23.2692
::::::ffff	chr10:120809210-120809438(-)$1	228	83	93	16.6346
::::::bb##	chr16:88851342-88851698(-)$1	356	199	209	19.5192
dd::::::::	chr5:179151560-179151846(+)$1	286	159	169	16.1538
ggggg]dddd	chr12:6878990-6879262(+)$1	272	95	105	23.2692
YYCCC:::::	chr2:61764493-61764743(-)$1	250	237	247	15.9615
ZZZGGGGGGG	chr16:447132-447396(+)$1	264	207	217	15.3846
66bb22eeee	chr17:27003135-27003439(+)$1	304	123	133	19.9038
[ammmma]a]	chr17:80193757-80193985(+)$1	228	141	151	15.6730
eDDDD::::=	chr17:48784871-48785244(-)$1	373	255	265	15.3846
c!!eeeee%%	chr17:37360677-37361017(+)$1	340	172	182	19.2307
cc::dddd[b	chr9:137241144-137241413(+)$1	269	99	109	19.6153
::::a!!ccc	chr10:120809328-120809600(-)$1	272	245	255	16.6346
dbbggggggg	chr10:105614882-105615357(-)$1	475	43	53	15.9615
::::::::ee	chr1:87380266-87380599(+)$1	333	106	116	15.8653
gggg::eeee	chr19:18392132-18392382(-)$1	250	77	87	19.3269
YHHHHHHHHf	chr17:48943258-48943624(-)$1	366	265	275	19.9038
fffff&&&&&	chr15:90328470-90328821(-)$1	351	187	197	15.6730
EEEEE}EEEE	chr19:45411715-45412023(+)$1	308	146	156	19.9038
PPPPPPA{AM	chr6:34664390-34664660(-)$1	270	21	31	19.5192
d22bb]ffff	chr1:27022878-27023116(+)$1	238	111	121	19.5192
ldddd22eee	chr11:2152407-2152614(-)$1	207	125	135	16.6346
dd22dddd22	chr10:102759453-102759750(+)$1	297	175	185	15.6730
^^^^^^^^^^	chr6:44219738-44220025(+)$1	287	172	182	19.5192
bbqqqqqqqq	chr10:98346576-98346890(-)$1	314	252	262	23.2692
=:::ffffff	chr2:232576572-232576794(+)$1	222	41	51	19.6153
ldddd:::cc	chr14:31676503-31676798(-)$1	295	41	51	16.5384
dqqqqqqqqd	chr6:167369867-167370136(-)$1	269	142	152	15.9615
ccc:::::::	chr7:134632375-134632621(+)$1	246	63	73	15.3846
EEE{A{BB::	chr1:156713841-156714162(-)$1	321	179	189	15.7692
HYYAYYAYYC	chr19:14200626-14200893(-)$1	267	173	183	23.2692
ggggggg[bb	chr4:76580159-76580533(-)$1	374	196	206	18.4615
iiiiiiii[a	chr22:36685224-36685444(-)$1	220	106	116	19.9038
fffff:::ee	chr20:278121-278416(+)$1	295	126	136	19.9038
bbdddd[eee	chr17:19015775-19016049(-)$1	274	178	188	16.1538
DDCCC}JJJJ	chr1:150947128-150947402(-)$1	274	153	163	19.9038
:::::::ddd	chr9:131590918-131591210(-)$1	292	72	82	15.4807
]affffffdd	chr20:3175857-3176095(-)$1	238	98	108	23.2692
++++++gggg	chr19:55628673-55629013(-)$1	340	293	303	15.5769
::::::::::	chr6:114181337-114181595(+)$1	258	207	217	19.7115
BBMMMMBBKK	chr17:4575245-4575587(-)$1	342	13	23	19.5192
mmmmdddd]d	chr15:72501951-72502233(-)$1	282	44	54	15.6730
ldddd22eee	chr11:2152312-2152542(-)$1	230	53	63	16.6346
ldddd22eee	chr11:2152414-2152619(-)$1	205	130	140	16.6346
DLLLGGGGGG	chr11:61106639-61106907(+)$1	268	22	32	15.6730
bb[bb[bb[b	chr16:9057069-9057340(-)$1	271	74	84	23.2692
ee]bb]bb]g	chr21:47565094-47565375(-)$1	281	148	158	15.6730
ccEEEEEJJJ	chr11:2152375-2152607(-)$1	232	118	128	16.6346
333dddd:::	chr19:953968-954235(+)$1	267	115	125	19.6153
88dddd:::c	chr20:40161613-40162071(-)$1	458	84	94	23.2692

#DB
((((((((.(	chr22:36685150-36685424(-)$1	1	86	96	19.9038
)))..((((.	chr2:54856094-54856353(+)$1	1	141	151	19.2307
((.((.((((	chr2:227664132-227664389(-)$1	1	1	11	23.2692
......((((	chr10:120809210-120809438(-)$1	1	83	93	16.6346
......((..	chr16:88851342-88851698(-)$1	1	199	209	19.5192
))........	chr5:179151560-179151846(+)$1	1	159	169	16.1538
))))).))))	chr12:6878990-6879262(+)$1	1	95	105	23.2692
..))).....	chr2:61764493-61764743(-)$1	1	237	247	15.9615
...)))))))	chr16:447132-447396(+)$1	1	207	217	15.3846
..))..))))	chr17:27003135-27003439(+)$1	1	123	133	19.9038
.(....).).	chr17:80193757-80193985(+)$1	1	141	151	15.6730
)((((....(	chr17:48784871-48785244(-)$1	1	255	265	15.3846
(..(((((..	chr17:37360677-37361017(+)$1	1	172	182	19.2307
))..((((.(	chr9:137241144-137241413(+)$1	1	99	109	19.6153
....(..(((	chr10:120809328-120809600(-)$1	1	245	255	16.6346
))))))))))	chr10:105614882-105615357(-)$1	1	43	53	15.9615
........((	chr1:87380266-87380599(+)$1	1	106	116	15.8653
))))..((((	chr19:18392132-18392382(-)$1	1	77	87	19.3269
.))))))))(	chr17:48943258-48943624(-)$1	1	265	275	19.9038
(((((.....	chr15:90328470-90328821(-)$1	1	187	197	15.6730
))))).))))	chr19:45411715-45412023(+)$1	1	146	156	19.9038
......(.(.	chr6:34664390-34664660(-)$1	1	21	31	19.5192
)..)).))))	chr1:27022878-27023116(+)$1	1	111	121	19.5192
.))))..)))	chr11:2152407-2152614(-)$1	1	125	135	16.6346
))..))))..	chr10:102759453-102759750(+)$1	1	175	185	15.6730
..........	chr6:44219738-44220025(+)$1	1	172	182	19.5192
((........	chr10:98346576-98346890(-)$1	1	252	262	23.2692
)...((((((	chr2:232576572-232576794(+)$1	1	41	51	19.6153
.))))...((	chr14:31676503-31676798(-)$1	1	41	51	16.5384
(........)	chr6:167369867-167370136(-)$1	1	142	152	15.9615
))).......	chr7:134632375-134632621(+)$1	1	63	73	15.3846
(((.(.((..	chr1:156713841-156714162(-)$1	1	179	189	15.7692
)..)..)..)	chr19:14200626-14200893(-)$1	1	173	183	23.2692
(((((((.((	chr4:76580159-76580533(-)$1	1	196	206	18.4615
((((((((.(	chr22:36685224-36685444(-)$1	1	106	116	19.9038
)))))...((	chr20:278121-278416(+)$1	1	126	136	19.9038
))((((.(((	chr17:19015775-19016049(-)$1	1	178	188	16.1538
))))).))))	chr1:150947128-150947402(-)$1	1	153	163	19.9038
.......(((	chr9:131590918-131591210(-)$1	1	72	82	15.4807
.)))))))))	chr20:3175857-3176095(-)$1	1	98	108	23.2692
......((((	chr19:55628673-55629013(-)$1	1	293	303	15.5769
..........	chr6:114181337-114181595(+)$1	1	207	217	19.7115
((....((..	chr17:4575245-4575587(-)$1	1	13	23	19.5192
....)))).)	chr15:72501951-72502233(-)$1	1	44	54	15.6730
.))))..)))	chr11:2152312-2152542(-)$1	1	53	63	16.6346
.))))..)))	chr11:2152414-2152619(-)$1	1	130	140	16.6346
(...((((((	chr11:61106639-61106907(+)$1	1	22	32	15.6730
((.((.((.(	chr16:9057069-9057340(-)$1	1	74	84	23.2692
)).)).)).)	chr21:47565094-47565375(-)$1	1	148	158	15.6730
))))))))))	chr11:2152375-2152607(-)$1	1	118	128	16.6346
...))))...	chr19:953968-954235(+)$1	1	115	125	19.6153
..))))...(	chr20:40161613-40162071(-)$1	1	84	94	23.2692

#PSSM
G : 0.49	g : 0.28	A : 0.13	U : 0.03	C : 0.01	c : 0.01	
G : 0.63	g : 0.24	C : 0.03	A : 0.03	a : 0.03	
A : 0.59	a : 0.19	C : 0.07	U : 0.07	c : 0.03	g : 0.01	
G : 0.63	g : 0.21	A : 0.05	C : 0.05	a : 0.03	
G : 0.63	g : 0.21	C : 0.07	A : 0.03	c : 0.03	
A : 0.69	a : 0.19	C : 0.05	c : 0.03	U : 0.01	
G : 0.65	g : 0.17	A : 0.09	a : 0.05	C : 0.01	
G : 0.75	g : 0.23	A : 0.01	
A : 0.61	a : 0.19	G : 0.13	c : 0.03	C : 0.01	
G : 0.76	g : 0.23	

#score	954.0384615384619
#seq	52
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_UTR_m2_run2.nuc.txt

#NT
GAAGGAC	chr2:55237169-55237424(-)$1	255	191	198	13.5000
UAAGGAG	chr22:50050802-50051039(-)$1	237	91	98	14.0555
gaaggag	chr6:86352565-86352827(-)$1	262	23	30	17.9444
gaaggag	chr2:20550327-20550587(-)$1	260	74	81	17.9444
GAAGGAG	chr3:15901014-15901315(-)$1	301	122	129	17.9444
CAAGGAG	chr2:132044905-132045160(+)$1	255	34	41	14.3333
GAAGGAG	chr19:50168058-50168449(-)$1	391	263	270	17.9444
GAGGGAG	chr1:2325730-2325966(+)$1	236	30	37	14.3333
GACGGAG	chr6:33168761-33169071(+)$1	310	170	177	14.0555
GAAAGAG	chr6:109702652-109702980(-)$1	328	48	55	13.5000
GAAGGAG	chr22:50050325-50050606(-)$1	281	161	168	17.9444
GAAGCAG	chr12:123463994-123464266(+)$1	272	65	72	13.5000
gaaggag	chr22:50013828-50014094(-)$1	266	115	122	17.9444
GAGGGAG	chr6:43589449-43589702(-)$1	253	5	12	14.3333
CAAGGAG	chr1:2325389-2325643(+)$1	254	94	101	14.3333
gaaggug	chr1:2325766-2326036(+)$1	270	152	159	14.0555
gaaggag	chr22:50013894-50014168(-)$1	274	189	196	17.9444

#otherMatches

#Struct PSSM
333a]cc	chr17:75212404-75212672(+)$1	268	183	190	14.0555
==dddd[	chr2:55237169-55237424(-)$1	255	191	198	13.5000
~~~~DDD	chr22:50050802-50051039(-)$1	237	91	98	14.0555
CNNNNNG	chr6:86352565-86352827(-)$1	262	23	30	17.9444
JJJJJJJ	chr2:20550327-20550587(-)$1	260	74	81	17.9444
GGGGG::	chr3:15901014-15901315(-)$1	301	122	129	17.9444
FFFFF:e	chr2:132044905-132045160(+)$1	255	34	41	14.3333
:::::::	chr19:50168058-50168449(-)$1	391	263	270	17.9444
HHHHHCC	chr1:2325730-2325966(+)$1	236	30	37	14.3333
iiiiiii	chr6:33168761-33169071(+)$1	310	170	177	14.0555
ff:::::	chr6:109702652-109702980(-)$1	328	48	55	13.5000
GGGGGG:	chr22:50050325-50050606(-)$1	281	161	168	17.9444
hhhhh:c	chr12:123463994-123464266(+)$1	272	65	72	13.5000
!!eeeee	chr22:50013828-50014094(-)$1	266	115	122	17.9444
::GGGGG	chr6:43589449-43589702(-)$1	253	5	12	14.3333
c4444dd	chr1:2325389-2325643(+)$1	254	94	101	14.3333
[a[a[ee	chr1:2325766-2326036(+)$1	270	152	159	14.0555
!!eeeee	chr22:50013894-50014168(-)$1	274	189	196	17.9444

#DB
...).))	chr17:75212404-75212672(+)$1	1	183	190	14.0555
((((((.	chr2:55237169-55237424(-)$1	1	191	198	13.5000
....)))	chr22:50050802-50051039(-)$1	1	91	98	14.0555
(.....(	chr6:86352565-86352827(-)$1	1	23	30	17.9444
(((((((	chr2:20550327-20550587(-)$1	1	74	81	17.9444
(((((..	chr3:15901014-15901315(-)$1	1	122	129	17.9444
(((((.(	chr2:132044905-132045160(+)$1	1	34	41	14.3333
.......	chr19:50168058-50168449(-)$1	1	263	270	17.9444
(((((((	chr1:2325730-2325966(+)$1	1	30	37	14.3333
(((((((	chr6:33168761-33169071(+)$1	1	170	177	14.0555
)).....	chr6:109702652-109702980(-)$1	1	48	55	13.5000
)))))).	chr22:50050325-50050606(-)$1	1	161	168	17.9444
))))).(	chr12:123463994-123464266(+)$1	1	65	72	13.5000
..(((((	chr22:50013828-50014094(-)$1	1	115	122	17.9444
..(((((	chr6:43589449-43589702(-)$1	1	5	12	14.3333
)....))	chr1:2325389-2325643(+)$1	1	94	101	14.3333
.(.(.((	chr1:2325766-2326036(+)$1	1	152	159	14.0555
..(((((	chr22:50013894-50014168(-)$1	1	189	196	17.9444

#PSSM
G : 0.55	g : 0.27	C : 0.11	U : 0.05	
A : 0.72	a : 0.27	
A : 0.55	a : 0.27	G : 0.11	C : 0.05	
G : 0.66	g : 0.27	A : 0.05	
G : 0.66	g : 0.27	C : 0.05	
A : 0.66	a : 0.22	U : 0.05	u : 0.05	
G : 0.66	g : 0.27	C : 0.05	

#score	279.66666666666674
#seq	18
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_UTR_m3_run2.nuc.txt

#NT
UCUUUU	chr1:84964097-84964357(-)$1	260	38	44	13.9433
UGUUUU	chr2:26587014-26587310(+)$1	296	252	258	15.4528
UAUUUU	chr7:155510928-155511239(+)$1	311	63	69	14.1320
UCUUUU	chr5:167932913-167933158(+)$1	245	73	79	13.9433
UGUUUU	chr20:34294979-34295230(-)$1	251	240	246	15.4528
UGUUUU	chr14:56118453-56118771(+)$1	318	285	291	15.4528
UGUUUU	chr1:224599126-224599411(-)$1	285	106	112	15.4528
UGuuuu	chr6:36569633-36569877(+)$1	244	72	78	15.4528
UCUUUU	chr2:198284251-198284526(-)$1	275	68	74	13.9433
UGUUUU	chr3:195794882-195795154(-)$1	272	140	146	15.4528
UGUUUU	chr7:925522-925810(+)$1	288	83	89	15.4528
uauuuu	chr2:38527298-38527566(-)$1	268	7	13	14.1320
UAUUUU	chr12:27128457-27128735(-)$1	278	94	100	14.1320
UCUUUU	chr12:50410404-50410656(-)$1	252	98	104	13.9433
UCUUUU	chr17:8108592-8108852(-)$1	260	58	64	13.9433
uguuuu	chr19:52592135-52592411(-)$1	276	96	102	15.4528
UGUUUU	chr3:15122083-15122419(-)$1	336	95	101	15.4528
UAUUUU	chr17:17171152-17171439(-)$1	287	63	69	14.1320
UGUUUU	chr7:86792395-86792634(+)$1	239	138	144	15.4528
UGUUUU	chrX:48434018-48434264(+)$1	246	96	102	15.4528
UGUUUU	chr1:93580130-93580379(+)$1	249	60	66	15.4528
UAUUUU	chr11:85373636-85373882(-)$1	246	19	25	14.1320
UGUUUU	chr1:155173175-155173477(-)$1	302	127	133	15.4528
UGUUUU	chr1:174244853-174245149(+)$1	296	288	294	15.4528
UAUUUU	chr7:151891520-151891795(-)$1	275	37	43	14.1320
UGUUUU	chr16:20851505-20851773(+)$1	268	133	139	15.4528
UAUUUU	chr8:95888305-95888565(+)$1	260	80	86	14.1320
UCUUUU	chr11:47194894-47195184(-)$1	290	39	45	13.9433
UUUUUU	chr12:76461178-76461415(-)$1	237	148	154	13.4716
UAUUUU	chr10:121339397-121339672(-)$1	275	50	56	14.1320
UGUUUU	chr1:11893405-11893697(+)$1	292	82	88	15.4528
UAUUUU	chr1:76200319-76200590(+)$1	271	69	75	14.1320
UGUUUU	chr15:60646284-60646546(-)$1	262	224	230	15.4528
UAUUUU	chr17:45729916-45730203(+)$1	287	109	115	14.1320
UUUUUU	chr11:20448159-20448440(+)$1	281	47	53	13.4716
UGUUUU	chr2:201824053-201824307(-)$1	254	77	83	15.4528
UGUUUU	chr18:9588727-9589006(-)$1	279	203	209	15.4528
UGUUUU	chr17:30678670-30678901(+)$1	231	73	79	15.4528
UGUUUU	chr9:135810273-135810639(-)$1	366	141	147	15.4528
UGUUUU	chr1:161183812-161184071(+)$1	259	72	78	15.4528
UGUUUU	chr9:134107587-134107823(+)$1	236	211	217	15.4528
UCUUUU	chr15:58302858-58303129(-)$1	271	5	11	13.9433
UCUUUU	chr17:62498203-62498436(-)$1	233	82	88	13.9433
UAUUUU	chr17:53013876-53014151(+)$1	275	93	99	14.1320
uuuuuu	chrX:153279571-153279831(-)$1	260	0	6	13.4716
UCUUUU	chr1:24975191-24975473(+)$1	282	147	153	13.9433
uuuuuu	chr21:45213038-45213318(+)$1	280	52	58	13.4716
UUUUUU	chr14:24613542-24613817(-)$1	275	62	68	13.4716
UGUUUU	chr1:93649381-93649683(+)$1	302	132	138	15.4528
UAUUUU	chr17:62498087-62498347(-)$1	260	87	93	14.1320
UCUUUU	chr17:48559301-48559560(+)$1	259	139	145	13.9433
UGUUUU	chr12:110936542-110936815(-)$1	273	252	258	15.4528

#otherMatches

#Struct PSSM
bb]eee	chr16:1910308-1910630(-)$1	322	116	122	15.4528
{EEEEE	chr1:84964097-84964357(-)$1	260	38	44	13.9433
nbb444	chr2:26587014-26587310(+)$1	296	252	258	15.4528
nnnnne	chr7:155510928-155511239(+)$1	311	63	69	14.1320
&&&&&&	chr5:167932913-167933158(+)$1	245	73	79	13.9433
::::::	chr20:34294979-34295230(-)$1	251	240	246	15.4528
hhhhhh	chr14:56118453-56118771(+)$1	318	285	291	15.4528
gggg[b	chr1:224599126-224599411(-)$1	285	106	112	15.4528
ccc:ii	chr6:36569633-36569877(+)$1	244	72	78	15.4528
::::::	chr2:198284251-198284526(-)$1	275	68	74	13.9433
gg::::	chr3:195794882-195795154(-)$1	272	140	146	15.4528
:hhhhh	chr7:925522-925810(+)$1	288	83	89	15.4528
IIIIII	chr2:38527298-38527566(-)$1	268	7	13	14.1320
eeeee[	chr12:27128457-27128735(-)$1	278	94	100	14.1320
iiiii#	chr12:50410404-50410656(-)$1	252	98	104	13.9433
666666	chr17:8108592-8108852(-)$1	260	58	64	13.9433
eeee33	chr19:52592135-52592411(-)$1	276	96	102	15.4528
4ccc::	chr3:15122083-15122419(-)$1	336	95	101	15.4528
hhhhhr	chr17:17171152-17171439(-)$1	287	63	69	14.1320
5=====	chr7:86792395-86792634(+)$1	239	138	144	15.4528
====::	chrX:48434018-48434264(+)$1	246	96	102	15.4528
ggglll	chr1:93580130-93580379(+)$1	249	60	66	15.4528
ssssss	chr11:85373636-85373882(-)$1	246	19	25	14.1320
::::::	chr1:155173175-155173477(-)$1	302	127	133	15.4528
}BB:::	chr1:174244853-174245149(+)$1	296	288	294	15.4528
::::::	chr7:151891520-151891795(-)$1	275	37	43	14.1320
ssssss	chr16:20851505-20851773(+)$1	268	133	139	15.4528
fffff:	chr8:95888305-95888565(+)$1	260	80	86	14.1320
eee:hh	chr11:47194894-47195184(-)$1	290	39	45	13.9433
dddppp	chr12:76461178-76461415(-)$1	237	148	154	13.4716
++++++	chr10:121339397-121339672(-)$1	275	50	56	14.1320
DDLLLD	chr1:11893405-11893697(+)$1	292	82	88	15.4528
ppp===	chr1:76200319-76200590(+)$1	271	69	75	14.1320
HHHHHH	chr15:60646284-60646546(-)$1	262	224	230	15.4528
ff!!cc	chr17:45729916-45730203(+)$1	287	109	115	14.1320
iiiiii	chr11:20448159-20448440(+)$1	281	47	53	13.4716
qqqqqq	chr2:201824053-201824307(-)$1	254	77	83	15.4528
======	chr18:9588727-9589006(-)$1	279	203	209	15.4528
xxxxxx	chr17:30678670-30678901(+)$1	231	73	79	15.4528
]a]===	chr9:135810273-135810639(-)$1	366	141	147	15.4528
dddqqq	chr1:161183812-161184071(+)$1	259	72	78	15.4528
ccmmmm	chr9:134107587-134107823(+)$1	236	211	217	15.4528
::::::	chr15:58302858-58303129(-)$1	271	5	11	13.9433
c22bb]	chr17:62498203-62498436(-)$1	233	82	88	13.9433
WWWWWW	chr17:53013876-53014151(+)$1	275	93	99	14.1320
::::::	chrX:153279571-153279831(-)$1	260	0	6	13.4716
D{EEEE	chr1:24975191-24975473(+)$1	282	147	153	13.9433
wwwwww	chr21:45213038-45213318(+)$1	280	52	58	13.4716
ffffmm	chr14:24613542-24613817(-)$1	275	62	68	13.4716
pppppd	chr1:93649381-93649683(+)$1	302	132	138	15.4528
iiiii2	chr17:62498087-62498347(-)$1	260	87	93	14.1320
ggg888	chr17:48559301-48559560(+)$1	259	139	145	13.9433
e[bbrr	chr12:110936542-110936815(-)$1	273	252	258	15.4528

#DB
)).)))	chr16:1910308-1910630(-)$1	1	116	122	15.4528
.(((((	chr1:84964097-84964357(-)$1	1	38	44	13.9433
.))...	chr2:26587014-26587310(+)$1	1	252	258	15.4528
.....)	chr7:155510928-155511239(+)$1	1	63	69	14.1320
......	chr5:167932913-167933158(+)$1	1	73	79	13.9433
......	chr20:34294979-34295230(-)$1	1	240	246	15.4528
((((((	chr14:56118453-56118771(+)$1	1	285	291	15.4528
((((.(	chr1:224599126-224599411(-)$1	1	106	112	15.4528
))).((	chr6:36569633-36569877(+)$1	1	72	78	15.4528
......	chr2:198284251-198284526(-)$1	1	68	74	13.9433
))....	chr3:195794882-195795154(-)$1	1	140	146	15.4528
.(((((	chr7:925522-925810(+)$1	1	83	89	15.4528
((((((	chr2:38527298-38527566(-)$1	1	7	13	14.1320
(((((.	chr12:27128457-27128735(-)$1	1	94	100	14.1320
(((((.	chr12:50410404-50410656(-)$1	1	98	104	13.9433
......	chr17:8108592-8108852(-)$1	1	58	64	13.9433
))))..	chr19:52592135-52592411(-)$1	1	96	102	15.4528
.)))..	chr3:15122083-15122419(-)$1	1	95	101	15.4528
(((((.	chr17:17171152-17171439(-)$1	1	63	69	14.1320
.)))))	chr7:86792395-86792634(+)$1	1	138	144	15.4528
))))..	chrX:48434018-48434264(+)$1	1	96	102	15.4528
(((...	chr1:93580130-93580379(+)$1	1	60	66	15.4528
......	chr11:85373636-85373882(-)$1	1	19	25	14.1320
......	chr1:155173175-155173477(-)$1	1	127	133	15.4528
.))...	chr1:174244853-174245149(+)$1	1	288	294	15.4528
......	chr7:151891520-151891795(-)$1	1	37	43	14.1320
......	chr16:20851505-20851773(+)$1	1	133	139	15.4528
))))).	chr8:95888305-95888565(+)$1	1	80	86	14.1320
))).((	chr11:47194894-47195184(-)$1	1	39	45	13.9433
(((...	chr12:76461178-76461415(-)$1	1	148	154	13.4716
......	chr10:121339397-121339672(-)$1	1	50	56	14.1320
((...(	chr1:11893405-11893697(+)$1	1	82	88	15.4528
...)))	chr1:76200319-76200590(+)$1	1	69	75	14.1320
))))))	chr15:60646284-60646546(-)$1	1	224	230	15.4528
((..((	chr17:45729916-45730203(+)$1	1	109	115	14.1320
((((((	chr11:20448159-20448440(+)$1	1	47	53	13.4716
......	chr2:201824053-201824307(-)$1	1	77	83	15.4528
))))))	chr18:9588727-9589006(-)$1	1	203	209	15.4528
......	chr17:30678670-30678901(+)$1	1	73	79	15.4528
.).)))	chr9:135810273-135810639(-)$1	1	141	147	15.4528
(((...	chr1:161183812-161184071(+)$1	1	72	78	15.4528
((....	chr9:134107587-134107823(+)$1	1	211	217	15.4528
......	chr15:58302858-58303129(-)$1	1	5	11	13.9433
)..)).	chr17:62498203-62498436(-)$1	1	82	88	13.9433
......	chr17:53013876-53014151(+)$1	1	93	99	14.1320
......	chrX:153279571-153279831(-)$1	1	0	6	13.4716
(.((((	chr1:24975191-24975473(+)$1	1	147	153	13.9433
......	chr21:45213038-45213318(+)$1	1	52	58	13.4716
((((..	chr14:24613542-24613817(-)$1	1	62	68	13.4716
.....)	chr1:93649381-93649683(+)$1	1	132	138	15.4528
))))).	chr17:62498087-62498347(-)$1	1	87	93	14.1320
)))...	chr17:48559301-48559560(+)$1	1	139	145	13.9433
(.((..	chr12:110936542-110936815(-)$1	1	252	258	15.4528

#PSSM
U : 0.92	u : 0.07	
G : 0.47	A : 0.20	C : 0.18	U : 0.05	u : 0.03	a : 0.01	g : 0.01	
U : 0.90	u : 0.09	
U : 0.90	u : 0.09	
U : 0.90	u : 0.09	
U : 0.90	u : 0.09	

#score	778.1509433962268
#seq	53
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_UTR_m3_run2.nuc.txt

#NT
ACAGCCGGGUGGGG	chr19:575243-575523(+)$1	280	130	144	16.5918
gccgccgcgcgcgg	chr20:49547275-49547552(-)$1	277	201	215	17.7142
UCGGCCGGAAGGGG	chr7:5569455-5569695(-)$1	240	37	51	17.3061
ccggcggcgcgggg	chr19:5719720-5720101(-)$1	381	238	252	19.3469
GCGUCGCGGUGGGG	chr7:150779628-150779857(-)$1	229	85	99	14.0408
gcggcgacgcgggg	chr2:97535541-97535801(-)$1	260	107	121	18.8367
GCGGGCCGGCGAGG	chr4:174255111-174255413(-)$1	302	112	126	17.1020
UCGGCCUUGGGGGG	chr19:2270202-2270434(+)$1	232	32	46	14.5510
GCGGCUGGGUCGGG	chr17:7477067-7477321(+)$1	254	186	200	19.2448
GCGGUCGCCCGGGG	chr6:31802927-31803205(+)$1	278	88	102	17.9183
GCGGCUCGUGGGGG	chr16:31044940-31045257(+)$1	317	59	73	14.5510
UCGGCCUUGGGGGG	chr19:2270097-2270395(+)$1	298	137	151	14.5510
CUGGCCGGGUGCGG	chr12:109124822-109125061(-)$1	239	156	170	14.5510
GCggccgggccggg	chr9:126692129-126692438(-)$1	309	277	291	24.2448
gcgggcaggcgggc	chr1:110527543-110527808(+)$1	265	55	69	16.5918
GCGGCCGGCCAAGG	chr5:138629681-138629966(+)$1	285	60	74	16.6938
gcggcggcggcggg	chr1:1822248-1822535(-)$1	287	69	83	17.7142
gcggccgggcuggg	chr8:30669838-30670090(-)$1	252	109	123	23.6326
GGGGUCAGGCGGGG	chr12:109124501-109124760(-)$1	259	176	190	15.7755
gcggccgagcgcgg	chr22:19418918-19419254(-)$1	336	59	73	21.0816
guggccgggccggg	chrX:152954279-152954567(+)$1	288	165	179	20.1632
gcggcggcgCGGGA	chr6:34360101-34360373(-)$1	272	39	53	18.5306
GCGGAAGGGUGAGG	chr8:87354877-87355141(+)$1	264	198	212	15.1632
UCCGCGGGGCGAGG	chr19:18547997-18548296(-)$1	299	5	19	14.0408
GCGGCCGGCCCGGC	chr7:5569348-5569622(-)$1	274	194	208	17.0000
ccgggcgggugggg	chr1:27022552-27022811(+)$1	259	232	246	18.6326
gcggcagggcccgg	chr8:102217325-102217606(-)$1	281	64	78	18.3265
gcggccgggcggag	chr7:151216103-151216386(-)$1	283	74	88	23.1224
ccgggcgggcggag	chr15:64752848-64753083(+)$1	235	148	162	16.8979
GGGGGCGGGUCGGG	chr11:118927499-118927773(-)$1	274	107	121	15.2653
GCGGCCGGACGCGC	chr1:26232172-26232446(-)$1	274	69	83	17.0000
GCGGCCGGGCUCGC	chr12:116714894-116715192(-)$1	298	234	248	17.1020
gcggaCGCGCGagg	chr6:86352565-86352819(-)$1	254	59	73	18.2244
gcggccgcggggag	chr1:245026158-245026465(-)$1	307	77	91	18.7346
GCGGGCGCGCGGAG	chr19:34287171-34287445(+)$1	274	164	178	18.1224
UCGGCCGGAAGGGG	chr7:5569495-5569749(-)$1	254	91	105	17.3061
CCGGCCGAGCGGGC	chr2:54197784-54198040(-)$1	256	125	139	16.8979
gcggccgggcccgg	chr11:3013145-3013465(-)$1	320	27	41	21.3877
GCGGCUGUGGGGAG	chr19:1407621-1407886(+)$1	265	57	71	15.1632
GCGGUGGGGUGGGG	chr19:18668655-18668969(+)$1	314	165	179	19.3469
gccgcggcgcuggg	chr5:154136577-154136852(+)$1	275	39	53	15.0612
GCGGCUGUUGGGGG	chr21:46644319-46644582(+)$1	263	137	151	15.5714
gcggccgggcgggg	chr8:30669986-30670267(-)$1	281	85	99	27.0000
GGGGCGGCUCGGGG	chr19:18548429-18548688(-)$1	259	60	74	15.2653
GCGGCGGGAGGGGG	chr19:16187751-16188015(+)$1	264	59	73	19.1428
GAgggcgggcgcgg	chr1:150947039-150947330(-)$1	291	98	112	17.2040
GAGGCCGGGCGGGC	chr20:35491744-35491989(-)$1	245	186	200	19.2448
GCGGCGGGUCCGGG	chr5:179248031-179248276(+)$1	245	16	30	18.6326

#otherMatches

#Struct PSSM
HHHHHHH{BBffff	chr19:10829098-10829349(+)$1	251	3	17	17.7142
FF:::dddd"""cc	chr19:575243-575523(+)$1	280	130	144	16.5918
bb[ffffffqqqqq	chr20:49547275-49547552(-)$1	277	201	215	17.7142
eeeea[eeeeea[c	chr7:5569455-5569695(-)$1	240	37	51	17.3061
YYDDDD}FFFFFF:	chr19:5719720-5720101(-)$1	381	238	252	19.3469
5dddd]a::::::f	chr7:150779628-150779857(-)$1	229	85	99	14.0408
eeeee:::bbmmmm	chr2:97535541-97535801(-)$1	260	107	121	18.8367
b]ffffff:A{JJJ	chr4:174255111-174255413(-)$1	302	112	126	17.1020
HH{AAA{BBHHHHH	chr19:2270202-2270434(+)$1	232	32	46	14.5510
bb[hhhhhhhh[ap	chr17:7477067-7477321(+)$1	254	186	200	19.2448
GGGGGGccc[dddd	chr6:31802927-31803205(+)$1	278	88	102	17.9183
fffiiiiiiiii!!	chr16:31044940-31045257(+)$1	317	59	73	14.5510
gggggggmmmmggg	chr19:2270097-2270395(+)$1	298	137	151	14.5510
eeeecccmmmmccc	chr12:109124822-109125061(-)$1	239	156	170	14.5510
ccc[dddd[ddddo	chr9:126692129-126692438(-)$1	309	277	291	24.2448
FFDDDD{BBKKEEE	chr1:110527543-110527808(+)$1	265	55	69	16.5918
[a[ccc[bb"""==	chr5:138629681-138629966(+)$1	285	60	74	16.6938
accc]bb]dddd]a	chr1:1822248-1822535(-)$1	287	69	83	17.7142
33ggggggg]ffff	chr8:30669838-30670090(-)$1	252	109	123	23.6326
ffffff22gggggg	chr12:109124501-109124760(-)$1	259	176	190	15.7755
ggggggg[bbmmmm	chr22:19418918-19419254(-)$1	336	59	73	21.0816
ffff]eeeee]eee	chrX:152954279-152954567(+)$1	288	165	179	20.1632
:BBKKBB{EEEEE:	chr6:34360101-34360373(-)$1	272	39	53	18.5306
dddd!!eeeeemmm	chr8:87354877-87355141(+)$1	264	198	212	15.1632
IIIIILLLBBLLLD	chr19:18547997-18548296(-)$1	299	5	19	14.0408
ee:HHHHHHHH}FF	chr7:5569348-5569622(-)$1	274	194	208	17.0000
::CCC}FFFFFFEE	chr1:27022552-27022811(+)$1	259	232	246	18.6326
""ffffffffffff	chr8:102217325-102217606(-)$1	281	64	78	18.3265
2eeeee22======	chr7:151216103-151216386(-)$1	283	74	88	23.1224
ffffff]a22dddd	chr15:64752848-64753083(+)$1	235	148	162	16.8979
JJJJJJJJJJJ:bb	chr11:118927499-118927773(-)$1	274	107	121	15.2653
dddoooooodddd]	chr1:26232172-26232446(-)$1	274	69	83	17.0000
ccooooooccc]dd	chr12:116714894-116715192(-)$1	298	234	248	17.1020
cccmmmmccc::::	chr6:86352565-86352819(-)$1	254	59	73	18.2244
[dddd[dddd[a[d	chr1:245026158-245026465(-)$1	307	77	91	18.7346
d]hhhhhhhha!!b	chr19:34287171-34287445(+)$1	274	164	178	18.1224
ddd[bbnnnnnbb]	chr7:5569495-5569749(-)$1	254	91	105	17.3061
ccc]ffffff::ff	chr2:54197784-54198040(-)$1	256	125	139	16.8979
JJJJJJJJJJffff	chr11:3013145-3013465(-)$1	320	27	41	21.3877
eeeee]dddd]a22	chr19:1407621-1407886(+)$1	265	57	71	15.1632
]eeeee]eeeee]a	chr19:18668655-18668969(+)$1	314	165	179	19.3469
cc[dddd[hhhhhh	chr5:154136577-154136852(+)$1	275	39	53	15.0612
nnnneeeee]dddd	chr21:46644319-46644582(+)$1	263	137	151	15.5714
a[bba[dddd[ccc	chr8:30669986-30670267(-)$1	281	85	99	27.0000
ddd[bbddddqqqq	chr19:18548429-18548688(-)$1	259	60	74	15.2653
ff[ccc[bbrrrrr	chr19:16187751-16188015(+)$1	264	59	73	19.1428
D{DDDDLLLBB{FF	chr1:150947039-150947330(-)$1	291	98	112	17.2040
d[dddd"""a[eee	chr20:35491744-35491989(-)$1	245	186	200	19.2448
======[a"""eee	chr5:179248031-179248276(+)$1	245	16	30	18.6326

#DB
(((((((.((((((	chr19:10829098-10829349(+)$1	1	3	17	17.7142
((...((((...((	chr19:575243-575523(+)$1	1	130	144	16.5918
((.((((((.....	chr20:49547275-49547552(-)$1	1	201	215	17.7142
(((((.((((((.(	chr7:5569455-5569695(-)$1	1	37	51	17.3061
..)))).)))))).	chr19:5719720-5720101(-)$1	1	238	252	19.3469
.)))).)......(	chr7:150779628-150779857(-)$1	1	85	99	14.0408
)))))...((....	chr2:97535541-97535801(-)$1	1	107	121	18.8367
).)))))).(.(((	chr4:174255111-174255413(-)$1	1	112	126	17.1020
((.(((.(((((((	chr19:2270202-2270434(+)$1	1	32	46	14.5510
((.((((((((.(.	chr17:7477067-7477321(+)$1	1	186	200	19.2448
(((((((((.((((	chr6:31802927-31803205(+)$1	1	88	102	17.9183
((((((((((((..	chr16:31044940-31045257(+)$1	1	59	73	14.5510
(((((((....)))	chr19:2270097-2270395(+)$1	1	137	151	14.5510
))))(((....)))	chr12:109124822-109125061(-)$1	1	156	170	14.5510
(((.((((.((((.	chr9:126692129-126692438(-)$1	1	277	291	24.2448
((((((.((..(((	chr1:110527543-110527808(+)$1	1	55	69	16.5918
.(.(((.((...((	chr5:138629681-138629966(+)$1	1	60	74	16.6938
)))).)).)))).)	chr1:1822248-1822535(-)$1	1	69	83	17.7142
..))))))).))))	chr8:30669838-30670090(-)$1	1	109	123	23.6326
))))))..))))))	chr12:109124501-109124760(-)$1	1	176	190	15.7755
(((((((.((....	chr22:19418918-19419254(-)$1	1	59	73	21.0816
)))).))))).)))	chrX:152954279-152954567(+)$1	1	165	179	20.1632
.((..((.(((((.	chr6:34360101-34360373(-)$1	1	39	53	18.5306
((((..(((((...	chr8:87354877-87355141(+)$1	1	198	212	15.1632
(((((...((...(	chr19:18547997-18548296(-)$1	1	5	19	14.0408
)).)))))))).))	chr7:5569348-5569622(-)$1	1	194	208	17.0000
..))).))))))))	chr1:27022552-27022811(+)$1	1	232	246	18.6326
..((((((((((((	chr8:102217325-102217606(-)$1	1	64	78	18.3265
.)))))..))))))	chr7:151216103-151216386(-)$1	1	74	88	23.1224
)))))).)..))))	chr15:64752848-64753083(+)$1	1	148	162	16.8979
(((((((((((.((	chr11:118927499-118927773(-)$1	1	107	121	15.2653
(((......)))).	chr1:26232172-26232446(-)$1	1	69	83	17.0000
((......))).))	chr12:116714894-116715192(-)$1	1	234	248	17.1020
(((....)))....	chr6:86352565-86352819(-)$1	1	59	73	18.2244
.((((.((((.(.(	chr1:245026158-245026465(-)$1	1	77	91	18.7346
).))))))))(..(	chr19:34287171-34287445(+)$1	1	164	178	18.1224
(((.((.....)).	chr7:5569495-5569749(-)$1	1	91	105	17.3061
))).))))))..((	chr2:54197784-54198040(-)$1	1	125	139	16.8979
((((((((((((((	chr11:3013145-3013465(-)$1	1	27	41	21.3877
))))).)))).)..	chr19:1407621-1407886(+)$1	1	57	71	15.1632
.))))).))))).)	chr19:18668655-18668969(+)$1	1	165	179	19.3469
((.((((.((((((	chr5:154136577-154136852(+)$1	1	39	53	15.0612
....))))).))))	chr21:46644319-46644582(+)$1	1	137	151	15.5714
(.(((.((((.(((	chr8:30669986-30670267(-)$1	1	85	99	27.0000
(((.((((((....	chr19:18548429-18548688(-)$1	1	60	74	15.2653
((.(((.((.....	chr19:16187751-16188015(+)$1	1	59	73	19.1428
(.((((...((.((	chr1:150947039-150947330(-)$1	1	98	112	17.2040
(.((((...(.(((	chr20:35491744-35491989(-)$1	1	186	200	19.2448
((((((.(...(((	chr5:179248031-179248276(+)$1	1	16	30	18.6326

#PSSM
G : 0.46	g : 0.30	U : 0.10	c : 0.06	C : 0.04	A : 0.02	
C : 0.51	c : 0.34	G : 0.06	A : 0.04	U : 0.02	u : 0.02	
G : 0.55	g : 0.36	c : 0.04	A : 0.02	C : 0.02	
G : 0.57	g : 0.40	U : 0.02	
C : 0.42	c : 0.30	G : 0.08	g : 0.08	U : 0.06	A : 0.02	a : 0.02	
C : 0.38	c : 0.26	G : 0.12	g : 0.10	U : 0.08	A : 0.02	a : 0.02	
G : 0.48	g : 0.34	C : 0.06	a : 0.04	U : 0.04	A : 0.02	
G : 0.42	g : 0.22	c : 0.14	U : 0.08	C : 0.08	a : 0.02	A : 0.02	
G : 0.38	g : 0.38	A : 0.08	U : 0.08	C : 0.06	
c : 0.30	C : 0.30	U : 0.16	G : 0.12	A : 0.04	g : 0.04	u : 0.02	
G : 0.51	g : 0.22	c : 0.10	C : 0.08	u : 0.04	A : 0.02	U : 0.02	
G : 0.46	g : 0.26	c : 0.10	A : 0.08	C : 0.06	a : 0.02	
G : 0.55	g : 0.32	a : 0.06	A : 0.04	C : 0.02	
G : 0.48	g : 0.36	C : 0.10	c : 0.02	A : 0.02	

#score	873.3061224489802
#seq	49
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_UTR_m3_run2.nuc.txt

#NT
gggccggggc	chr9:139702498-139702742(+)$1	244	54	64	21.3333
ggagcggggc	chrX:20284801-20285056(-)$1	255	238	248	21.7777
gcggcggGGC	chr22:23522681-23522953(+)$1	272	103	113	22.1111
ggggcugggg	chr5:159848894-159849142(+)$1	248	92	102	19.5555
ggggcggggc	chr2:242255216-242255534(+)$1	318	84	94	25.8888
ggggcggggc	chr9:139560093-139560346(+)$1	253	55	65	25.8888
ggggcggggc	chr1:21113612-21113897(-)$1	285	84	94	25.8888
GGGGCGGGGC	chr11:64014151-64014405(-)$1	254	68	78	25.8888
GGGGCGGGGA	chr20:57466409-57466666(+)$1	257	140	150	22.2222
GGGGUGGGGC	chr8:28748266-28748554(+)$1	288	123	133	21.4444
GGGGCUGGGC	chr3:38206938-38207266(+)$1	328	126	136	22.2222
ggggcggggc	chr6:15663027-15663314(-)$1	287	87	97	25.8888
GGGGCGGGGG	chr19:51869422-51869736(-)$1	314	80	90	23.2222
GGAGCGGGGC	chr1:1822234-1822584(-)$1	350	154	164	21.7777
GGGGCGGGGC	chr17:73401554-73401849(-)$1	295	35	45	25.8888
GGGGCGGGGC	chr11:535377-535653(-)$1	276	1	11	25.8888
ggggcugggg	chr2:183902912-183903185(-)$1	273	76	86	19.5555
GGGGCGGGGC	chr8:42911375-42911654(+)$1	279	70	80	25.8888
GGAGCGGGGC	chr3:195808606-195808864(-)$1	258	105	115	21.7777
GCGGCGGGGC	chr7:102715521-102715882(+)$1	361	290	300	22.1111
ggggcggggg	chr2:159313387-159313632(+)$1	245	198	208	23.2222
GGGGCGGGGG	chr9:139734941-139735239(+)$1	298	57	67	23.2222
UGGGCGGGGC	chr1:46049635-46049962(+)$1	327	26	36	21.1111
GGGGCGGGGG	chr1:213031653-213031961(+)$1	308	103	113	23.2222
gcggcggggc	chr5:179718767-179719147(-)$1	380	170	180	22.1111
GAGGCGGGGC	chr7:5569459-5569721(-)$1	262	192	202	21.6666
GGUGCGGGGC	chr19:49588745-49588965(+)$1	220	178	188	21.5555
GCGGCGGGGC	chr3:25705697-25705984(-)$1	287	118	128	22.1111
ggggccgggc	chr22:39853268-39853534(+)$1	266	113	123	21.8888
ggggcggggc	chr12:109125103-109125366(-)$1	263	4	14	25.8888
GGGGUGGGGC	chr19:18547536-18547851(-)$1	315	88	98	21.4444
gggccggggc	chr8:30669790-30670096(-)$1	306	77	87	21.3333
ggggcggggg	chr1:27022557-27022812(+)$1	255	171	181	23.2222
GGGGCGGAGC	chr4:2845497-2845818(+)$1	321	169	179	21.3333
GGGGCUGGGC	chr4:120987739-120988063(-)$1	324	20	30	22.2222
ggggcggggg	chr11:66025446-66025765(+)$1	319	46	56	23.2222
GGCGCGGGGC	chr5:162864640-162864911(+)$1	271	226	236	21.5555
ggggcggggc	chr1:226250321-226250563(+)$1	242	50	60	25.8888
GGGGCCGGGC	chr12:133404825-133405099(-)$1	274	167	177	21.8888
ggggcggagc	chr9:101558616-101558914(-)$1	298	82	92	21.3333
ggggcugggg	chr19:1585122-1585439(-)$1	317	58	68	19.5555
GGGGAGGGGC	chr19:974672-974897(+)$1	225	17	27	21.3333
GGGGCGGGGC	chr20:57607200-57607496(-)$1	296	34	44	25.8888
gcggcggggg	chr19:59069656-59069915(-)$1	259	99	109	19.4444

#otherMatches

#Struct PSSM
JJJJJJJJYY	chr16:777075-777421(+)$1	346	135	145	25.8888
hhhhhhhccc	chr9:139702498-139702742(+)$1	244	54	64	21.3333
cc]ddddbb]	chrX:20284801-20285056(-)$1	255	238	248	21.7777
B{DDDDHHHH	chr22:23522681-23522953(+)$1	272	103	113	22.1111
iiiiiiii[c	chr5:159848894-159849142(+)$1	248	92	102	19.5555
==!!bbhhhh	chr2:242255216-242255534(+)$1	318	84	94	25.8888
c[cccqqqqq	chr9:139560093-139560346(+)$1	253	55	65	25.8888
BKKCCCdddd	chr1:21113612-21113897(-)$1	285	84	94	25.8888
::ccc!!ccc	chr11:64014151-64014405(-)$1	254	68	78	25.8888
======[aqq	chr20:57466409-57466666(+)$1	257	140	150	22.2222
qqqqqqqq==	chr8:28748266-28748554(+)$1	288	123	133	21.4444
::dddd[fff	chr3:38206938-38207266(+)$1	328	126	136	22.2222
eqqqqqqqqe	chr6:15663027-15663314(-)$1	287	87	97	25.8888
FFKKHHHHHH	chr19:51869422-51869736(-)$1	314	80	90	23.2222
bb!!ccc[dd	chr1:1822234-1822584(-)$1	350	154	164	21.7777
mmmggggggg	chr17:73401554-73401849(-)$1	295	35	45	25.8888
CCCCCC{EEE	chr11:535377-535653(-)$1	276	1	11	25.8888
ee::dddd[b	chr2:183902912-183903185(-)$1	273	76	86	19.5555
A{CCCEEEEE	chr8:42911375-42911654(+)$1	279	70	80	25.8888
333bb4444d	chr3:195808606-195808864(-)$1	258	105	115	21.7777
hhhhhhhh]a	chr7:102715521-102715882(+)$1	361	290	300	22.1111
bbeeeee]bb	chr2:159313387-159313632(+)$1	245	198	208	23.2222
pppppppfff	chr9:139734941-139735239(+)$1	298	57	67	23.2222
e::ccc[ccc	chr1:46049635-46049962(+)$1	327	26	36	21.1111
c%%%%%%a[e	chr1:213031653-213031961(+)$1	308	103	113	23.2222
ddd]gggggg	chr5:179718767-179719147(-)$1	380	170	180	22.1111
!!ccclllcc	chr7:5569459-5569721(-)$1	262	192	202	21.6666
eee"""ccco	chr19:49588745-49588965(+)$1	220	178	188	21.5555
DDffffffcc	chr3:25705697-25705984(-)$1	287	118	128	22.1111
eeee22cccf	chr22:39853268-39853534(+)$1	266	113	123	21.8888
[ddddllldd	chr12:109125103-109125366(-)$1	263	4	14	25.8888
ggg!!a[iii	chr19:18547536-18547851(-)$1	315	88	98	21.4444
22ccc333dd	chr8:30669790-30670096(-)$1	306	77	87	21.3333
ee========	chr1:27022557-27022812(+)$1	255	171	181	23.2222
bb[dddd[dd	chr4:2845497-2845818(+)$1	321	169	179	21.3333
bb[bbfffff	chr4:120987739-120988063(-)$1	324	20	30	22.2222
EEEccc[bb[	chr11:66025446-66025765(+)$1	319	46	56	23.2222
========[a	chr5:162864640-162864911(+)$1	271	226	236	21.5555
B{BB{JJJJJ	chr1:226250321-226250563(+)$1	242	50	60	25.8888
JJJJJJJJJJ	chr12:133404825-133405099(-)$1	274	167	177	21.8888
mmmmdddddd	chr9:101558616-101558914(-)$1	298	82	92	21.3333
b!!bb[eeee	chr19:1585122-1585439(-)$1	317	58	68	19.5555
fffffffddd	chr19:974672-974897(+)$1	225	17	27	21.3333
MMMHHHHHHH	chr20:57607200-57607496(-)$1	296	34	44	25.8888
[bb[bb[fff	chr19:59069656-59069915(-)$1	259	99	109	19.4444

#DB
))))))))..	chr16:777075-777421(+)$1	1	135	145	25.8888
)))))))(((	chr9:139702498-139702742(+)$1	1	54	64	21.3333
)).)))))).	chrX:20284801-20285056(-)$1	1	238	248	21.7777
(.((((((((	chr22:23522681-23522953(+)$1	1	103	113	22.1111
((((((((.(	chr5:159848894-159849142(+)$1	1	92	102	19.5555
((..((((((	chr2:242255216-242255534(+)$1	1	84	94	25.8888
(.(((.....	chr9:139560093-139560346(+)$1	1	55	65	25.8888
(..(((((((	chr1:21113612-21113897(-)$1	1	84	94	25.8888
..(((..(((	chr11:64014151-64014405(-)$1	1	68	78	25.8888
((((((.(..	chr20:57466409-57466666(+)$1	1	140	150	22.2222
........))	chr8:28748266-28748554(+)$1	1	123	133	21.4444
..((((.(((	chr3:38206938-38207266(+)$1	1	126	136	22.2222
(........)	chr6:15663027-15663314(-)$1	1	87	97	25.8888
((..((((((	chr19:51869422-51869736(-)$1	1	80	90	23.2222
((..(((.((	chr1:1822234-1822584(-)$1	1	154	164	21.7777
...)))))))	chr17:73401554-73401849(-)$1	1	35	45	25.8888
((((((.(((	chr11:535377-535653(-)$1	1	1	11	25.8888
))..((((.(	chr2:183902912-183903185(-)$1	1	76	86	19.5555
(.((((((((	chr8:42911375-42911654(+)$1	1	70	80	25.8888
...))....)	chr3:195808606-195808864(-)$1	1	105	115	21.7777
)))))))).)	chr7:102715521-102715882(+)$1	1	290	300	22.1111
))))))).))	chr2:159313387-159313632(+)$1	1	198	208	23.2222
.......)))	chr9:139734941-139735239(+)$1	1	57	67	23.2222
)..(((.(((	chr1:46049635-46049962(+)$1	1	26	36	21.1111
(......(.(	chr1:213031653-213031961(+)$1	1	103	113	23.2222
))).))))))	chr5:179718767-179719147(-)$1	1	170	180	22.1111
..(((...))	chr7:5569459-5569721(-)$1	1	192	202	21.6666
(((...(((.	chr19:49588745-49588965(+)$1	1	178	188	21.5555
))((((((((	chr3:25705697-25705984(-)$1	1	118	128	22.1111
))))..)))(	chr22:39853268-39853534(+)$1	1	113	123	21.8888
.((((...))	chr12:109125103-109125366(-)$1	1	4	14	25.8888
(((..(.(((	chr19:18547536-18547851(-)$1	1	88	98	21.4444
..)))...))	chr8:30669790-30670096(-)$1	1	77	87	21.3333
))))))))))	chr1:27022557-27022812(+)$1	1	171	181	23.2222
((.((((.((	chr4:2845497-2845818(+)$1	1	169	179	21.3333
((.(((((((	chr4:120987739-120988063(-)$1	1	20	30	22.2222
((((((.((.	chr11:66025446-66025765(+)$1	1	46	56	23.2222
((((((((.(	chr5:162864640-162864911(+)$1	1	226	236	21.5555
(.((.(((((	chr1:226250321-226250563(+)$1	1	50	60	25.8888
))))))))))	chr12:133404825-133405099(-)$1	1	167	177	21.8888
....))))))	chr9:101558616-101558914(-)$1	1	82	92	21.3333
(..((.((((	chr19:1585122-1585439(-)$1	1	58	68	19.5555
((((((((((	chr19:974672-974897(+)$1	1	17	27	21.3333
...(((((((	chr20:57607200-57607496(-)$1	1	34	44	25.8888
.((.((.(((	chr19:59069656-59069915(-)$1	1	99	109	19.4444

#PSSM
G : 0.51	g : 0.46	U : 0.02	
G : 0.46	g : 0.39	c : 0.06	C : 0.04	A : 0.02	
g : 0.44	G : 0.44	A : 0.04	a : 0.02	U : 0.02	C : 0.02	
G : 0.53	g : 0.42	c : 0.04	
c : 0.46	C : 0.46	U : 0.04	A : 0.02	
G : 0.46	g : 0.37	u : 0.06	U : 0.04	c : 0.02	C : 0.02	
G : 0.53	g : 0.46	
G : 0.53	g : 0.42	A : 0.02	a : 0.02	
G : 0.55	g : 0.44	
C : 0.46	c : 0.28	g : 0.15	G : 0.06	A : 0.02	

#score	1027.7777777777774
#seq	45
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_UTR_m3_run1.nuc.txt

#NT
GGGAGUGGG	chr17:38078019-38078272(-)$1	253	49	58	18.3333
GGGAGGUGG	chr12:56990677-56990938(-)$1	261	123	132	18.4444
GGGAGGGGG	chr16:88718527-88718805(-)$1	278	112	121	22.5555
GGGAGGGAG	chr21:46932733-46932981(+)$1	248	90	99	18.5555
CGGAGGGGG	chr1:154530974-154531230(-)$1	256	34	43	17.8888
GGGAGGGGC	chr22:39131736-39132027(-)$1	291	120	129	18.2222
GGGAGGGGU	chr3:52468573-52468933(-)$1	360	125	134	18.1111
GGAAGGGGG	chr8:145159427-145159739(+)$1	312	84	93	18.2222
GGGCGGGGG	chr12:12764948-12765223(+)$1	275	77	86	18.7777
GGGAGGAGG	chr3:49052690-49052953(+)$1	263	129	138	18.5555
gggcggggg	chr1:1284440-1284728(-)$1	288	139	148	18.7777
gggaggggg	chr3:48699911-48700183(-)$1	272	35	44	22.5555
GGCAGGGGG	chr11:404727-404989(+)$1	262	39	48	18.2222
GGGAGGGAG	chr14:24776796-24777095(+)$1	299	14	23	18.5555
GGGAGGGAG	chr11:74916270-74916552(+)$1	282	154	163	18.5555
GGGAGAGGG	chr9:139820828-139821112(+)$1	284	99	108	18.2222
GGGAGGAGG	chr2:99224977-99225295(+)$1	318	157	166	18.5555
ggguggggg	chr2:242758516-242758763(+)$1	247	52	61	18.6666
gggagggag	chr18:29077974-29078289(+)$1	315	122	131	18.5555
GGGAGGCGG	chr3:195635532-195635869(-)$1	337	41	50	18.3333
GGCAGGGGG	chr9:136229434-136229661(-)$1	227	154	163	18.2222
GGGAGCGGG	chr12:111180483-111180692(-)$1	209	33	42	18.3333
GGGAUGGGG	chr2:231743157-231743449(+)$1	292	12	21	18.6666
gggcggggg	chr1:1284338-1284616(-)$1	278	27	36	18.7777
GGGAAGGGG	chr22:39131075-39131323(-)$1	248	152	161	18.4444
GGAAGGGGG	chr16:1749167-1749456(+)$1	289	88	97	18.2222
GGGAGCGGG	chr12:111180542-111180782(-)$1	240	123	132	18.3333
GGGAUGGGG	chr9:136627567-136627842(-)$1	275	47	56	18.6666
GGGAUGGGG	chr2:241570319-241570620(+)$1	301	216	225	18.6666
GGGAGGAGG	chr11:65365313-65365592(-)$1	279	130	139	18.5555
GGGAGGGGG	chr9:117032907-117033120(+)$1	213	20	29	22.5555
GAGAGGGGG	chr17:7835449-7835721(+)$1	272	121	130	17.7777
GGGAGGGGC	chr17:41009506-41009812(+)$1	306	129	138	18.2222
GGGAGGGGA	chr11:47199157-47199459(-)$1	302	118	127	18.1111
GGGAUGGGG	chr22:24812582-24812894(+)$1	312	109	118	18.6666
GGGAGGGUG	chr4:3769728-3769964(+)$1	236	109	118	18.2222
GGGAAGGGG	chr11:85668926-85669179(-)$1	253	107	116	18.4444
GGGUGGGGG	chr11:66112779-66113042(-)$1	263	227	236	18.6666
GGGCGGGGG	chr16:29917177-29917398(+)$1	221	134	143	18.7777
gggaggggg	chr8:30669813-30670099(-)$1	286	102	111	22.5555
GGGAGGGGG	chr9:35756797-35757154(+)$1	357	174	183	22.5555
GGGUGGGGG	chr6:16305587-16305876(-)$1	289	140	149	18.6666
AGGAGGGGG	chr1:20978671-20978925(-)$1	254	93	102	17.8888
GGGAGGUGG	chr6:33739813-33740133(-)$1	320	95	104	18.4444

#otherMatches

#Struct PSSM
a[a[fffff	chr16:30535264-30535534(-)$1	270	94	103	18.3333
dddd]a]ab	chr17:38078019-38078272(-)$1	253	49	58	18.3333
gggggg]cc	chr12:56990677-56990938(-)$1	261	123	132	18.4444
rrrrrrrrr	chr16:88718527-88718805(-)$1	278	112	121	22.5555
CCAKKEEEE	chr21:46932733-46932981(+)$1	248	90	99	18.5555
:ccc[cccm	chr1:154530974-154531230(-)$1	256	34	43	17.8888
iisssssss	chr22:39131736-39132027(-)$1	291	120	129	18.2222
iiiiiiii]	chr3:52468573-52468933(-)$1	360	125	134	18.1111
J:::eeeee	chr8:145159427-145159739(+)$1	312	84	93	18.2222
ccEEEEEcc	chr12:12764948-12765223(+)$1	275	77	86	18.7777
fffff!!bb	chr3:49052690-49052953(+)$1	263	129	138	18.5555
oooooobb]	chr1:1284440-1284728(-)$1	288	139	148	18.7777
oooooofff	chr3:48699911-48700183(-)$1	272	35	44	22.5555
B{BB{EEEE	chr11:404727-404989(+)$1	262	39	48	18.2222
JJJJJJJJJ	chr14:24776796-24777095(+)$1	299	14	23	18.5555
==22ccc::	chr11:74916270-74916552(+)$1	282	154	163	18.5555
FFFFFFCCC	chr9:139820828-139821112(+)$1	284	99	108	18.2222
eeee!!ggg	chr2:99224977-99225295(+)$1	318	157	166	18.5555
ccc[fffff	chr2:242758516-242758763(+)$1	247	52	61	18.6666
e:::A}JJJ	chr18:29077974-29078289(+)$1	315	122	131	18.5555
eeeeqqqqq	chr3:195635532-195635869(-)$1	337	41	50	18.3333
mmccc]bb]	chr9:136229434-136229661(-)$1	227	154	163	18.2222
bb!!ddddh	chr12:111180483-111180692(-)$1	209	33	42	18.3333
JJJJJJJJJ	chr2:231743157-231743449(+)$1	292	12	21	18.6666
beeeee[ee	chr1:1284338-1284616(-)$1	278	27	36	18.7777
dddGGGGGG	chr22:39131075-39131323(-)$1	248	152	161	18.4444
eee22a]a]	chr16:1749167-1749456(+)$1	289	88	97	18.2222
bb!!ddddh	chr12:111180542-111180782(-)$1	240	123	132	18.3333
C{EEEEEKK	chr9:136627567-136627842(-)$1	275	47	56	18.6666
ooooodddd	chr2:241570319-241570620(+)$1	301	216	225	18.6666
EEYYCCCAC	chr11:65365313-65365592(-)$1	279	130	139	18.5555
ccbb=====	chr9:117032907-117033120(+)$1	213	20	29	22.5555
eee[bb!!f	chr17:7835449-7835721(+)$1	272	121	130	17.7777
gggghhhhh	chr17:41009506-41009812(+)$1	306	129	138	18.2222
cc[eeeeen	chr11:47199157-47199459(-)$1	302	118	127	18.1111
lllffffff	chr22:24812582-24812894(+)$1	312	109	118	18.6666
gggggg]a]	chr4:3769728-3769964(+)$1	236	109	118	18.2222
==ddddhhh	chr11:85668926-85669179(-)$1	253	107	116	18.4444
ma]a]ffff	chr11:66112779-66113042(-)$1	263	227	236	18.6666
JJJJJJJJJ	chr16:29917177-29917398(+)$1	221	134	143	18.7777
5555iiiii	chr8:30669813-30670099(-)$1	286	102	111	22.5555
DDDKKFFFF	chr9:35756797-35757154(+)$1	357	174	183	22.5555
JJJJJJJJ:	chr6:16305587-16305876(-)$1	289	140	149	18.6666
::ccc[eee	chr1:20978671-20978925(-)$1	254	93	102	17.8888
ee333dddd	chr6:33739813-33740133(-)$1	320	95	104	18.4444

#DB
(.(.(((((	chr16:30535264-30535534(-)$1	1	94	103	18.3333
)))).).))	chr17:38078019-38078272(-)$1	1	49	58	18.3333
)))))).))	chr12:56990677-56990938(-)$1	1	123	132	18.4444
.........	chr16:88718527-88718805(-)$1	1	112	121	22.5555
(((..((((	chr21:46932733-46932981(+)$1	1	90	99	18.5555
.(((.(((.	chr1:154530974-154531230(-)$1	1	34	43	17.8888
((.......	chr22:39131736-39132027(-)$1	1	120	129	18.2222
)))))))).	chr3:52468573-52468933(-)$1	1	125	134	18.1111
(...(((((	chr8:145159427-145159739(+)$1	1	84	93	18.2222
))(((((((	chr12:12764948-12765223(+)$1	1	77	86	18.7777
(((((..((	chr3:49052690-49052953(+)$1	1	129	138	18.5555
......)).	chr1:1284440-1284728(-)$1	1	139	148	18.7777
......)))	chr3:48699911-48700183(-)$1	1	35	44	22.5555
(.((.((((	chr11:404727-404989(+)$1	1	39	48	18.2222
(((((((((	chr14:24776796-24777095(+)$1	1	14	23	18.5555
))..)))..	chr11:74916270-74916552(+)$1	1	154	163	18.5555
))))))(((	chr9:139820828-139821112(+)$1	1	99	108	18.2222
((((..(((	chr2:99224977-99225295(+)$1	1	157	166	18.5555
(((.(((((	chr2:242758516-242758763(+)$1	1	52	61	18.6666
)...).)))	chr18:29077974-29078289(+)$1	1	122	131	18.5555
((((.....	chr3:195635532-195635869(-)$1	1	41	50	18.3333
..))).)).	chr9:136229434-136229661(-)$1	1	154	163	18.2222
((..(((((	chr12:111180483-111180692(-)$1	1	33	42	18.3333
(((((((((	chr2:231743157-231743449(+)$1	1	12	21	18.6666
((((((.((	chr1:1284338-1284616(-)$1	1	27	36	18.7777
)))))))))	chr22:39131075-39131323(-)$1	1	152	161	18.4444
)))..).).	chr16:1749167-1749456(+)$1	1	88	97	18.2222
((..(((((	chr12:111180542-111180782(-)$1	1	123	132	18.3333
(.(((((..	chr9:136627567-136627842(-)$1	1	47	56	18.6666
.....))))	chr2:241570319-241570620(+)$1	1	216	225	18.6666
))..)))))	chr11:65365313-65365592(-)$1	1	130	139	18.5555
(((((((((	chr9:117032907-117033120(+)$1	1	20	29	22.5555
(((.((..(	chr17:7835449-7835721(+)$1	1	121	130	17.7777
(((((((((	chr17:41009506-41009812(+)$1	1	129	138	18.2222
((.(((((.	chr11:47199157-47199459(-)$1	1	118	127	18.1111
...))))))	chr22:24812582-24812894(+)$1	1	109	118	18.6666
)))))).).	chr4:3769728-3769964(+)$1	1	109	118	18.2222
)))))))))	chr11:85668926-85669179(-)$1	1	107	116	18.4444
.).).))))	chr11:66112779-66113042(-)$1	1	227	236	18.6666
)))))))))	chr16:29917177-29917398(+)$1	1	134	143	18.7777
....)))))	chr8:30669813-30670099(-)$1	1	102	111	22.5555
(((..((((	chr9:35756797-35757154(+)$1	1	174	183	22.5555
((((((((.	chr6:16305587-16305876(-)$1	1	140	149	18.6666
..(((.(((	chr1:20978671-20978925(-)$1	1	93	102	17.8888
))...))))	chr6:33739813-33740133(-)$1	1	95	104	18.4444

#PSSM
G : 0.82	g : 0.13	C : 0.02	A : 0.02	
G : 0.84	g : 0.13	A : 0.02	
G : 0.77	g : 0.13	A : 0.04	C : 0.04	
A : 0.77	a : 0.06	C : 0.04	c : 0.04	U : 0.04	u : 0.02	
G : 0.73	g : 0.13	U : 0.08	A : 0.04	
G : 0.75	g : 0.13	U : 0.04	C : 0.04	A : 0.02	
G : 0.73	g : 0.13	A : 0.06	U : 0.04	C : 0.02	
G : 0.77	g : 0.11	A : 0.06	a : 0.02	U : 0.02	
G : 0.77	g : 0.13	C : 0.04	U : 0.02	A : 0.02	

#score	849.4444444444446
#seq	45
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_UTR_m2_run1.nuc.txt

#NT
GCAGGGGCCG	chr22:46508660-46508915(+)$1	255	138	148	18.5714
GCGGUGGCUG	chr12:62997004-62997266(+)$1	262	208	218	15.7142
gcaggggcug	chr6:86352558-86352822(-)$1	264	38	48	21.2500
GCAGGGACAG	chr17:79860502-79860766(-)$1	264	168	178	14.1964
GCCGGGGCUG	chr8:144676551-144676794(-)$1	243	219	229	19.4642
UGAGGGGCUG	chr3:184044979-184045233(+)$1	254	198	208	14.5535
GGAGGGGCUG	chr10:88516563-88516873(+)$1	310	139	149	18.7500
GCUGGGGCAG	chr12:57505065-57505311(-)$1	246	163	173	16.0714
GCCGAGGCUG	chr3:49057803-49058052(-)$1	249	125	135	15.8928
CCCGGGGCUG	chr11:61582539-61582782(-)$1	243	172	182	15.0000
GCAGGCGCUG	chr2:242707714-242707989(+)$1	275	14	24	16.7857
GCAGCGGCCG	chr16:53164967-53165230(+)$1	263	75	85	15.0892
GCAGCGGCAG	chr20:62331308-62331613(-)$1	305	38	48	15.0000
ggaggggGUG	chr20:57467338-57467615(+)$1	277	94	104	14.5535
GGAGGGGCUG	chr3:184079613-184079862(+)$1	249	76	86	18.7500
GCCUGGGCUG	chr20:361884-362138(+)$1	254	120	130	15.0892
GCAGGGCCUG	chr16:30205863-30206161(+)$1	298	54	64	17.3214
ggcggggcgg	chr1:245026144-245026426(-)$1	282	2	12	14.1964
GCGGUGGCUG	chr12:62997101-62997376(+)$1	275	111	121	15.7142
GCGGGGCCUG	chr20:62572812-62573062(-)$1	250	79	89	15.4464
GGAGAGGCUG	chr17:80192616-80192893(+)$1	277	204	214	15.1785
GCUCGGGCUG	chr13:113863080-113863323(+)$1	243	28	38	14.2857
GCAGGGGCCG	chr22:41487714-41487983(+)$1	269	207	217	18.5714
GGAGGGGAUG	chr17:7082186-7082421(-)$1	235	36	46	14.2857
GCUggggccg	chr2:101767639-101767902(-)$1	263	154	164	16.1607
GCGGCGGCUG	chr8:103424328-103424631(-)$1	303	73	83	15.8928
GCAGGGCCUG	chr3:184080521-184080770(+)$1	249	52	62	17.3214
GCGGGGGCGG	chr16:89787350-89787602(+)$1	252	98	108	16.6071
gaaggggcgg	chr19:42788119-42788373(+)$1	254	43	53	15.0000
GCGGGGGCGG	chr16:89787402-89787640(+)$1	238	46	56	16.6071
UCAGGGGCAG	chr17:28444058-28444277(+)$1	219	158	168	14.2857
UCAGGGGCAG	chr17:28444041-28444258(+)$1	217	175	185	14.2857
GCCGGGGCUG	chr2:61405213-61405439(+)$1	226	102	112	19.4642
UCAGGGGCAG	chr17:28444012-28444237(+)$1	225	204	214	14.2857
GGCGGGGCUG	chr7:5569350-5569605(-)$1	255	78	88	16.9642
GCGGUGGCUG	chr12:62997066-62997288(+)$1	222	146	156	15.7142
GCAGGGCCCG	chr19:2270133-2270422(+)$1	289	130	140	14.6428
GCGGGCGCUG	chr11:96122467-96122766(-)$1	299	205	215	14.9107
GGAGGGUCUG	chr3:49050843-49051138(+)$1	295	211	221	14.4642
GGGGGGGCGG	chr6:32938734-32939010(+)$1	276	39	49	14.1071
GCAGGGCCUG	chr1:205418851-205419098(-)$1	247	190	200	17.3214
GCAGGGGGGG	chr1:90308941-90309197(+)$1	256	38	48	14.2857
ggagggggug	chr2:54197724-54198040(-)$1	316	89	99	14.5535
gccggggcug	chr4:2935780-2936125(-)$1	345	66	76	19.4642
GGAGGGGCUA	chr7:150935645-150935908(+)$1	263	52	62	14.1071
GCUGGGGGUG	chr17:7082221-7082570(-)$1	349	93	103	14.6428
GGAGGGGCUG	chr3:184080669-184080945(+)$1	276	91	101	18.7500
GCCUGGGCUG	chr20:361771-362025(+)$1	254	233	243	15.0892
GCAGAGGCUG	chr1:2122104-2122376(-)$1	272	89	99	17.6785
gcggcggcug	chr9:101558650-101558912(-)$1	262	213	223	15.8928
GCAGCGGCUC	chr7:77166501-77166754(+)$1	253	116	126	13.2142
GAAGGGGCUC	chr4:1303118-1303357(+)$1	239	5	15	13.2142
gcaggggccg	chr6:170123967-170124242(-)$1	275	60	70	18.5714
GCCUGGGCUG	chr7:5569512-5569746(-)$1	234	64	74	15.0892
GCCGAGGCUG	chr3:49057852-49058091(-)$1	239	164	174	15.8928

#otherMatches

#Struct PSSM
pppppa]bb]	chr12:19592491-19592784(+)$1	293	130	140	14.1071
ddd[eeeee%	chr22:46508660-46508915(+)$1	255	138	148	18.5714
=======]bb	chr12:62997004-62997266(+)$1	262	208	218	15.7142
bb####ccc[	chr6:86352558-86352822(-)$1	264	38	48	21.2500
]a22dddd99	chr17:79860502-79860766(-)$1	264	168	178	14.1964
eee]ccc]dd	chr8:144676551-144676794(-)$1	243	219	229	19.4642
eeeeefffff	chr3:184044979-184045233(+)$1	254	198	208	14.5535
cc22dddddd	chr10:88516563-88516873(+)$1	310	139	149	18.7500
gggggeeeee	chr12:57505065-57505311(-)$1	246	163	173	16.0714
dd]fffffff	chr3:49057803-49058052(-)$1	249	125	135	15.8928
BGGGGGGGDD	chr11:61582539-61582782(-)$1	243	172	182	15.0000
{A:FFFFFFD	chr2:242707714-242707989(+)$1	275	14	24	16.7857
fffffmmmmf	chr16:53164967-53165230(+)$1	263	75	85	15.0892
bb]a]ccc]c	chr20:62331308-62331613(-)$1	305	38	48	15.0000
eeeeedddd2	chr20:57467338-57467615(+)$1	277	94	104	14.5535
EEEEEDDDD{	chr3:184079613-184079862(+)$1	249	76	86	18.7500
gggggg]a33	chr20:361884-362138(+)$1	254	120	130	15.0892
mccc:GGGGG	chr16:30205863-30206161(+)$1	298	54	64	17.3214
[ffffff[dd	chr1:245026144-245026426(-)$1	282	2	12	14.1964
=======]bb	chr12:62997101-62997376(+)$1	275	111	121	15.7142
eeddddnnnn	chr20:62572812-62573062(-)$1	250	79	89	15.4464
qqqqqqdddd	chr17:80192616-80192893(+)$1	277	204	214	15.1785
cc]ffffff3	chr13:113863080-113863323(+)$1	243	28	38	14.2857
FF}A}EEEEE	chr22:41487714-41487983(+)$1	269	207	217	18.5714
gggg^^^^^^	chr17:7082186-7082421(-)$1	235	36	46	14.2857
======]aFF	chr2:101767639-101767902(-)$1	263	154	164	16.1607
DDD:EEEEEE	chr8:103424328-103424631(-)$1	303	73	83	15.8928
NBB{CCCCCC	chr3:184080521-184080770(+)$1	249	52	62	17.3214
bbmmmmbb]b	chr16:89787350-89787602(+)$1	252	98	108	16.6071
MMMMDDDDNN	chr19:42788119-42788373(+)$1	254	43	53	15.0000
HHHHHCCC{F	chr16:89787402-89787640(+)$1	238	46	56	16.6071
:ggggggg[b	chr17:28444058-28444277(+)$1	219	158	168	14.2857
:ggggggg[b	chr17:28444041-28444258(+)$1	217	175	185	14.2857
ccffffff]a	chr2:61405213-61405439(+)$1	226	102	112	19.4642
cccdddd]ff	chr17:28444012-28444237(+)$1	225	204	214	14.2857
FFF{HHHHHH	chr7:5569350-5569605(-)$1	255	78	88	16.9642
=======]bb	chr12:62997066-62997288(+)$1	222	146	156	15.7142
GGGGGGHHHH	chr19:2270133-2270422(+)$1	289	130	140	14.6428
eeeeeccc[b	chr11:96122467-96122766(-)$1	299	205	215	14.9107
##a[ddddnn	chr3:49050843-49051138(+)$1	295	211	221	14.4642
mdddd22eee	chr6:32938734-32939010(+)$1	276	39	49	14.1071
eeeeeddddE	chr1:205418851-205419098(-)$1	247	190	200	17.3214
QQGGGGGGGd	chr1:90308941-90309197(+)$1	256	38	48	14.2857
KBB:ccc[a[	chr2:54197724-54198040(-)$1	316	89	99	14.5535
ddd]eeeee]	chr4:2935780-2936125(-)$1	345	66	76	19.4642
bb[ffffffc	chr7:150935645-150935908(+)$1	263	52	62	14.1071
ccc]eeeee3	chr17:7082221-7082570(-)$1	349	93	103	14.6428
JJJJJJJJJJ	chr3:184080669-184080945(+)$1	276	91	101	18.7500
ddd:EEEEEY	chr20:361771-362025(+)$1	254	233	243	15.0892
ddddlllddd	chr1:2122104-2122376(-)$1	272	89	99	17.6785
========]f	chr9:101558650-101558912(-)$1	262	213	223	15.8928
333bb22ggg	chr7:77166501-77166754(+)$1	253	116	126	13.2142
mmcccEEEEE	chr4:1303118-1303357(+)$1	239	5	15	13.2142
bb!!bb[bb[	chr6:170123967-170124242(-)$1	275	60	70	18.5714
ddddoooooo	chr7:5569512-5569746(-)$1	234	64	74	15.0892
ddddmmmmdd	chr3:49057852-49058091(-)$1	239	164	174	15.8928

#DB
.....).)).	chr12:19592491-19592784(+)$1	1	130	140	14.1071
(((.(((((.	chr22:46508660-46508915(+)$1	1	138	148	18.5714
))))))).))	chr12:62997004-62997266(+)$1	1	208	218	15.7142
((....(((.	chr6:86352558-86352822(-)$1	1	38	48	21.2500
.)..))))..	chr17:79860502-79860766(-)$1	1	168	178	14.1964
))).))).))	chr8:144676551-144676794(-)$1	1	219	229	19.4642
((((((((((	chr3:184044979-184045233(+)$1	1	198	208	14.5535
))..))))))	chr10:88516563-88516873(+)$1	1	139	149	18.7500
)))))(((((	chr12:57505065-57505311(-)$1	1	163	173	16.0714
)).)))))))	chr3:49057803-49058052(-)$1	1	125	135	15.8928
))))))))))	chr11:61582539-61582782(-)$1	1	172	182	15.0000
.(.(((((((	chr2:242707714-242707989(+)$1	1	14	24	16.7857
(((((....)	chr16:53164967-53165230(+)$1	1	75	85	15.0892
)).).))).)	chr20:62331308-62331613(-)$1	1	38	48	15.0000
))))))))).	chr20:57467338-57467615(+)$1	1	94	104	14.5535
(((((((((.	chr3:184079613-184079862(+)$1	1	76	86	18.7500
)))))).)..	chr20:361884-362138(+)$1	1	120	130	15.0892
.))).(((((	chr16:30205863-30206161(+)$1	1	54	64	17.3214
.((((((.((	chr1:245026144-245026426(-)$1	1	2	12	14.1964
))))))).))	chr12:62997101-62997376(+)$1	1	111	121	15.7142
((((((....	chr20:62572812-62573062(-)$1	1	79	89	15.4464
......))))	chr17:80192616-80192893(+)$1	1	204	214	15.1785
)).)))))).	chr13:113863080-113863323(+)$1	1	28	38	14.2857
)).).)))))	chr22:41487714-41487983(+)$1	1	207	217	18.5714
((((......	chr17:7082186-7082421(-)$1	1	36	46	14.2857
)))))).)))	chr2:101767639-101767902(-)$1	1	154	164	16.1607
))).((((((	chr8:103424328-103424631(-)$1	1	73	83	15.8928
.((.((((((	chr3:184080521-184080770(+)$1	1	52	62	17.3214
((....)).)	chr16:89787350-89787602(+)$1	1	98	108	16.6071
....((((..	chr19:42788119-42788373(+)$1	1	43	53	15.0000
((((((((.(	chr16:89787402-89787640(+)$1	1	46	56	16.6071
.(((((((.(	chr17:28444058-28444277(+)$1	1	158	168	14.2857
.(((((((.(	chr17:28444041-28444258(+)$1	1	175	185	14.2857
)))))))).)	chr2:61405213-61405439(+)$1	1	102	112	19.4642
))))))).))	chr17:28444012-28444237(+)$1	1	204	214	14.2857
(((.((((((	chr7:5569350-5569605(-)$1	1	78	88	16.9642
))))))).))	chr12:62997066-62997288(+)$1	1	146	156	15.7142
((((((((((	chr19:2270133-2270422(+)$1	1	130	140	14.6428
((((((((.(	chr11:96122467-96122766(-)$1	1	205	215	14.9107
..(.((((..	chr3:49050843-49051138(+)$1	1	211	221	14.4642
.))))..)))	chr6:32938734-32939010(+)$1	1	39	49	14.1071
))))))))))	chr1:205418851-205419098(-)$1	1	190	200	17.3214
..((((((((	chr1:90308941-90309197(+)$1	1	38	48	14.2857
.((.(((.(.	chr2:54197724-54198040(-)$1	1	89	99	14.5535
))).))))).	chr4:2935780-2936125(-)$1	1	66	76	19.4642
((.(((((((	chr7:150935645-150935908(+)$1	1	52	62	14.1071
))).))))).	chr17:7082221-7082570(-)$1	1	93	103	14.6428
((((((((((	chr3:184080669-184080945(+)$1	1	91	101	18.7500
))).))))).	chr20:361771-362025(+)$1	1	233	243	15.0892
((((...)))	chr1:2122104-2122376(-)$1	1	89	99	17.6785
)))))))).)	chr9:101558650-101558912(-)$1	1	213	223	15.8928
...))..)))	chr7:77166501-77166754(+)$1	1	116	126	13.2142
..)))(((((	chr4:1303118-1303357(+)$1	1	5	15	13.2142
((..((.((.	chr6:170123967-170124242(-)$1	1	60	70	18.5714
((((......	chr7:5569512-5569746(-)$1	1	64	74	15.0892
((((....))	chr3:49057852-49058091(-)$1	1	164	174	15.8928

#PSSM
G : 0.75	g : 0.16	U : 0.07	C : 0.01	
C : 0.64	G : 0.17	c : 0.08	g : 0.05	a : 0.01	A : 0.01	
A : 0.44	G : 0.16	C : 0.16	a : 0.10	U : 0.07	c : 0.03	g : 0.01	
G : 0.75	g : 0.17	U : 0.05	C : 0.01	
G : 0.62	g : 0.16	A : 0.07	C : 0.07	U : 0.05	c : 0.01	
G : 0.78	g : 0.16	C : 0.05	
G : 0.71	g : 0.16	C : 0.08	A : 0.01	U : 0.01	
C : 0.78	c : 0.12	G : 0.05	A : 0.01	g : 0.01	
U : 0.58	A : 0.10	C : 0.08	u : 0.07	G : 0.07	g : 0.03	c : 0.03	
G : 0.80	g : 0.14	C : 0.03	A : 0.01	

#score	892.3214285714284
#seq	56
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_transcript_m2_run1.nuc.txt

#NT
UGCUG	chr1:980517-980753(+)$1	236	85	90	15.0000
UGCUG	chr9:116997791-116998033(+)$1	242	70	75	15.0000
UGCUG	chr8:145001651-145001963(-)$1	312	201	206	15.0000
UGCUG	chr12:9251105-9251320(-)$1	215	60	65	15.0000
UGCUG	chr16:46956088-46956449(+)$1	361	136	141	15.0000
UGCUG	chr16:30081218-30081424(+)$1	206	7	12	15.0000
UGCUG	chr2:216234916-216235121(-)$1	205	143	148	15.0000
UGCUG	chr6:168366379-168366658(+)$1	279	133	138	15.0000
UGCUG	chr7:45928255-45928487(+)$1	232	39	44	15.0000
UGCUG	chr20:47896781-47897018(+)$1	237	73	78	15.0000
UGCUG	chr3:186338671-186338921(+)$1	250	135	140	15.0000
UGCUG	chrY:10037678-10037893(+)$1	215	27	32	15.0000
UGCUG	chr4:155527783-155528045(-)$1	262	115	120	15.0000
UGCUG	chr19:6679320-6679532(-)$1	212	107	112	15.0000
UGCUG	chr3:133477918-133478143(+)$1	225	36	41	15.0000
UGCUG	chr19:45409804-45410024(+)$1	220	99	104	15.0000
UGCUG	chr13:98995922-98996220(+)$1	298	112	117	15.0000
UGCUG	chr2:11772927-11773194(+)$1	267	32	37	15.0000
UGCUG	chr8:134256497-134256734(-)$1	237	229	234	15.0000
UGCUG	chr2:21228146-21228387(-)$1	241	152	157	15.0000
UGCUG	chr2:63091826-63092083(+)$1	257	241	246	15.0000
UGCUG	chr2:36583338-36583622(+)$1	284	155	160	15.0000
ugcug	chr14:23792109-23792331(+)$1	222	17	22	15.0000
UGCUG	chr2:54876128-54876390(+)$1	262	54	59	15.0000
UGCUG	chr3:120393729-120393937(-)$1	208	133	138	15.0000
UGCUG	chr20:60903374-60903599(-)$1	225	179	184	15.0000
UGCUG	chr19:6697256-6697470(-)$1	214	61	66	15.0000
UGCUG	chr2:21252680-21252936(-)$1	256	84	89	15.0000
UGCUG	chr21:47630512-47630760(-)$1	248	72	77	15.0000
UGCUG	chr6:7577911-7578161(+)$1	250	92	97	15.0000
UGCUG	chrX:132826329-132826577(-)$1	248	152	157	15.0000
UGCUG	chr2:54876971-54877227(+)$1	256	179	184	15.0000
UGCUG	chr11:129998849-129999184(+)$1	335	184	189	15.0000
UGCUG	chr20:60889766-60889977(-)$1	211	4	9	15.0000
UGCUG	chr3:133476654-133476890(+)$1	236	22	27	15.0000
UGCUG	chr16:18478804-18479127(-)$1	323	18	23	15.0000
UGCUG	chr1:116937631-116937884(+)$1	253	36	41	15.0000
UGCUG	chr7:45928395-45928628(+)$1	233	197	202	15.0000
UGCUG	chr4:74274996-74275227(+)$1	231	177	182	15.0000
UGCUG	chr13:77900694-77900959(-)$1	265	189	194	15.0000
UGCUG	chr8:27457240-27457518(-)$1	278	130	135	15.0000
UGCUG	chr19:47290776-47291077(-)$1	301	18	23	15.0000
UGCUG	chr16:30078842-30079082(+)$1	240	0	5	15.0000
UGCUG	chr1:230845765-230846008(-)$1	243	19	24	15.0000
UGCUG	chr2:97482740-97482979(+)$1	239	100	105	15.0000
UGCUG	chr11:1776126-1776357(-)$1	231	131	136	15.0000
UGCUG	chr10:101567143-101567374(+)$1	231	73	78	15.0000
UGCUG	chr3:133474112-133474368(+)$1	256	84	89	15.0000
UGCUG	chr3:186334897-186335105(+)$1	208	120	125	15.0000
UGCUG	chr3:120393662-120393907(-)$1	245	103	108	15.0000
UGCUG	chr12:76449711-76450007(-)$1	296	48	53	15.0000
UGCUG	chr12:9227184-9227421(-)$1	237	118	123	15.0000
UGCUG	chr3:52831791-52832049(+)$1	258	78	83	15.0000
UGCUG	chr19:6696503-6696743(-)$1	240	2	7	15.0000
UGCUG	chr11:71146718-71146986(-)$1	268	159	164	15.0000
UGCUG	chr2:11758888-11759138(+)$1	250	134	139	15.0000

#otherMatches

#Struct PSSM
dddd:	chr12:26816526-26816801(-)$1	275	74	79	15.0000
EEKKB	chr1:980517-980753(+)$1	236	85	90	15.0000
cccoo	chr9:116997791-116998033(+)$1	242	70	75	15.0000
ggggg	chr8:145001651-145001963(-)$1	312	201	206	15.0000
ddd]a	chr12:9251105-9251320(-)$1	215	60	65	15.0000
IIIII	chr16:46956088-46956449(+)$1	361	136	141	15.0000
C{CCC	chr16:30081218-30081424(+)$1	206	7	12	15.0000
eeqqq	chr2:216234916-216235121(-)$1	205	143	148	15.0000
dnnnn	chr6:168366379-168366658(+)$1	279	133	138	15.0000
hhhhh	chr7:45928255-45928487(+)$1	232	39	44	15.0000
(====	chr20:47896781-47897018(+)$1	237	73	78	15.0000
d]ccc	chr3:186338671-186338921(+)$1	250	135	140	15.0000
eeebb	chrY:10037678-10037893(+)$1	215	27	32	15.0000
iiiii	chr4:155527783-155528045(-)$1	262	115	120	15.0000
ooooo	chr19:6679320-6679532(-)$1	212	107	112	15.0000
lccc]	chr3:133477918-133478143(+)$1	225	36	41	15.0000
fffff	chr19:45409804-45410024(+)$1	220	99	104	15.0000
]bbee	chr13:98995922-98996220(+)$1	298	112	117	15.0000
eee[g	chr2:11772927-11773194(+)$1	267	32	37	15.0000
FFF::	chr8:134256497-134256734(-)$1	237	229	234	15.0000
fffff	chr2:21228146-21228387(-)$1	241	152	157	15.0000
~~~EE	chr2:63091826-63092083(+)$1	257	241	246	15.0000
=====	chr2:36583338-36583622(+)$1	284	155	160	15.0000
%%%dd	chr14:23792109-23792331(+)$1	222	17	22	15.0000
FFFFF	chr2:54876128-54876390(+)$1	262	54	59	15.0000
cccll	chr3:120393729-120393937(-)$1	208	133	138	15.0000
d333c	chr20:60903374-60903599(-)$1	225	179	184	15.0000
mmmmd	chr19:6697256-6697470(-)$1	214	61	66	15.0000
:bbqq	chr2:21252680-21252936(-)$1	256	84	89	15.0000
bb[dd	chr21:47630512-47630760(-)$1	248	72	77	15.0000
:::HH	chr6:7577911-7578161(+)$1	250	92	97	15.0000
CCCYY	chrX:132826329-132826577(-)$1	248	152	157	15.0000
nneee	chr2:54876971-54877227(+)$1	256	179	184	15.0000
B}DDD	chr11:129998849-129999184(+)$1	335	184	189	15.0000
eqqqq	chr20:60889766-60889977(-)$1	211	4	9	15.0000
%%%%%	chr3:133476654-133476890(+)$1	236	22	27	15.0000
]cccD	chr16:18478804-18479127(-)$1	323	18	23	15.0000
^^^^^	chr1:116937631-116937884(+)$1	253	36	41	15.0000
cccgg	chr7:45928395-45928628(+)$1	233	197	202	15.0000
[cccn	chr4:74274996-74275227(+)$1	231	177	182	15.0000
ggbb[	chr13:77900694-77900959(-)$1	265	189	194	15.0000
2eeee	chr8:27457240-27457518(-)$1	278	130	135	15.0000
{BB{F	chr19:47290776-47291077(-)$1	301	18	23	15.0000
:HHHH	chr16:30078842-30079082(+)$1	240	0	5	15.0000
PA{JJ	chr1:230845765-230846008(-)$1	243	19	24	15.0000
]bbcc	chr2:97482740-97482979(+)$1	239	100	105	15.0000
ccc[g	chr11:1776126-1776357(-)$1	231	131	136	15.0000
GGGGG	chr10:101567143-101567374(+)$1	231	73	78	15.0000
EEKKI	chr3:133474112-133474368(+)$1	256	84	89	15.0000
ee[bb	chr3:186334897-186335105(+)$1	208	120	125	15.0000
cccll	chr3:120393662-120393907(-)$1	245	103	108	15.0000
zzzzz	chr12:76449711-76450007(-)$1	296	48	53	15.0000
GGGGG	chr12:9227184-9227421(-)$1	237	118	123	15.0000
GGGGL	chr3:52831791-52832049(+)$1	258	78	83	15.0000
bccc!	chr19:6696503-6696743(-)$1	240	2	7	15.0000
]eeee	chr11:71146718-71146986(-)$1	268	159	164	15.0000
mmddd	chr2:11758888-11759138(+)$1	250	134	139	15.0000

#DB
)))).	chr12:26816526-26816801(-)$1	1	74	79	15.0000
((..(	chr1:980517-980753(+)$1	1	85	90	15.0000
(((..	chr9:116997791-116998033(+)$1	1	70	75	15.0000
)))))	chr8:145001651-145001963(-)$1	1	201	206	15.0000
))).)	chr12:9251105-9251320(-)$1	1	60	65	15.0000
(((((	chr16:46956088-46956449(+)$1	1	136	141	15.0000
(.(((	chr16:30081218-30081424(+)$1	1	7	12	15.0000
((...	chr2:216234916-216235121(-)$1	1	143	148	15.0000
(....	chr6:168366379-168366658(+)$1	1	133	138	15.0000
(((((	chr7:45928255-45928487(+)$1	1	39	44	15.0000
.((((	chr20:47896781-47897018(+)$1	1	73	78	15.0000
).)))	chr3:186338671-186338921(+)$1	1	135	140	15.0000
(((((	chrY:10037678-10037893(+)$1	1	27	32	15.0000
)))))	chr4:155527783-155528045(-)$1	1	115	120	15.0000
.....	chr19:6679320-6679532(-)$1	1	107	112	15.0000
.))).	chr3:133477918-133478143(+)$1	1	36	41	15.0000
(((((	chr19:45409804-45410024(+)$1	1	99	104	15.0000
.))))	chr13:98995922-98996220(+)$1	1	112	117	15.0000
(((.(	chr2:11772927-11773194(+)$1	1	32	37	15.0000
)))..	chr8:134256497-134256734(-)$1	1	229	234	15.0000
(((((	chr2:21228146-21228387(-)$1	1	152	157	15.0000
...))	chr2:63091826-63092083(+)$1	1	241	246	15.0000
)))))	chr2:36583338-36583622(+)$1	1	155	160	15.0000
...((	chr14:23792109-23792331(+)$1	1	17	22	15.0000
)))))	chr2:54876128-54876390(+)$1	1	54	59	15.0000
(((..	chr3:120393729-120393937(-)$1	1	133	138	15.0000
)...)	chr20:60903374-60903599(-)$1	1	179	184	15.0000
....)	chr19:6697256-6697470(-)$1	1	61	66	15.0000
.((..	chr2:21252680-21252936(-)$1	1	84	89	15.0000
((.((	chr21:47630512-47630760(-)$1	1	72	77	15.0000
...((	chr6:7577911-7578161(+)$1	1	92	97	15.0000
)))..	chrX:132826329-132826577(-)$1	1	152	157	15.0000
..)))	chr2:54876971-54877227(+)$1	1	179	184	15.0000
).)))	chr11:129998849-129999184(+)$1	1	184	189	15.0000
(....	chr20:60889766-60889977(-)$1	1	4	9	15.0000
.....	chr3:133476654-133476890(+)$1	1	22	27	15.0000
.)))(	chr16:18478804-18479127(-)$1	1	18	23	15.0000
.....	chr1:116937631-116937884(+)$1	1	36	41	15.0000
)))))	chr7:45928395-45928628(+)$1	1	197	202	15.0000
.(((.	chr4:74274996-74275227(+)$1	1	177	182	15.0000
((((.	chr13:77900694-77900959(-)$1	1	189	194	15.0000
.))))	chr8:27457240-27457518(-)$1	1	130	135	15.0000
.((.(	chr19:47290776-47291077(-)$1	1	18	23	15.0000
.((((	chr16:30078842-30079082(+)$1	1	0	5	15.0000
.(.((	chr1:230845765-230846008(-)$1	1	19	24	15.0000
.))))	chr2:97482740-97482979(+)$1	1	100	105	15.0000
(((.(	chr11:1776126-1776357(-)$1	1	131	136	15.0000
(((((	chr10:101567143-101567374(+)$1	1	73	78	15.0000
((..(	chr3:133474112-133474368(+)$1	1	84	89	15.0000
((.((	chr3:186334897-186335105(+)$1	1	120	125	15.0000
(((..	chr3:120393662-120393907(-)$1	1	103	108	15.0000
.....	chr12:76449711-76450007(-)$1	1	48	53	15.0000
(((((	chr12:9227184-9227421(-)$1	1	118	123	15.0000
((((.	chr3:52831791-52832049(+)$1	1	78	83	15.0000
((((.	chr19:6696503-6696743(-)$1	1	2	7	15.0000
.))))	chr11:71146718-71146986(-)$1	1	159	164	15.0000
..)))	chr2:11758888-11759138(+)$1	1	134	139	15.0000

#PSSM
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	855.0000000000005
#seq	57
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_CDS_m1_run2.nuc.txt

#NT
GGAG	chr3:48625704-48626044(-)$1	340	46	50	12.0000
GGAG	chr8:145621761-145622012(-)$1	251	30	34	12.0000
ggag	chr8:30669829-30670045(-)$1	216	3	7	12.0000
GGAG	chr17:36865319-36865580(+)$1	261	31	35	12.0000
GGAG	chr8:145693803-145694073(+)$1	270	41	45	12.0000
GGAG	chr6:42984812-42985089(+)$1	277	141	145	12.0000
GGAG	chr12:120587319-120587559(-)$1	240	1	5	12.0000
GGAG	chr13:79945886-79946165(-)$1	279	108	112	12.0000
GGAG	chr17:80543865-80544125(+)$1	260	182	186	12.0000
GGAG	chr17:40937185-40937440(+)$1	255	140	144	12.0000
GGAG	chr11:372594-372824(+)$1	230	110	114	12.0000
GGAG	chr12:6439533-6439831(-)$1	298	84	88	12.0000
GGAG	chr22:20127263-20127521(+)$1	258	129	133	12.0000
GGAG	chr22:51017488-51017782(-)$1	294	5	9	12.0000
GGAG	chr1:110163583-110163877(+)$1	294	19	23	12.0000
GGAG	chr17:74099642-74099881(-)$1	239	65	69	12.0000
GGAG	chr11:61630430-61630634(+)$1	204	82	86	12.0000
GGAG	chr20:32247328-32247580(-)$1	252	94	98	12.0000
GGAG	chr2:27255813-27256089(+)$1	276	51	55	12.0000
GGAG	chr7:117824218-117824527(+)$1	309	73	77	12.0000
GGAG	chr16:9185793-9186062(+)$1	269	61	65	12.0000
ggag	chr12:123466250-123466528(+)$1	278	38	42	12.0000
ggag	chr17:55333982-55334231(+)$1	249	6	10	12.0000
GGAG	chr15:80215406-80215667(-)$1	261	84	88	12.0000
GGAG	chrX:106045941-106046197(+)$1	256	55	59	12.0000
GGAG	chr12:110719431-110719698(+)$1	267	40	44	12.0000
GGAG	chr1:31902466-31902682(+)$1	216	55	59	12.0000
GGAG	chr14:23792137-23792365(+)$1	228	95	99	12.0000
GGAG	chr19:55752658-55752938(-)$1	280	81	85	12.0000
GGAG	chr16:16280915-16281163(-)$1	248	202	206	12.0000
ggag	chr19:54967044-54967277(+)$1	233	10	14	12.0000
GGAG	chr19:10227304-10227597(-)$1	293	66	70	12.0000
GGAG	chr20:60907632-60907868(-)$1	236	16	20	12.0000
GGAG	chr4:26322415-26322773(+)$1	358	112	116	12.0000
ggag	chr3:48699925-48700212(-)$1	287	17	21	12.0000
GGAG	chr7:100136879-100137106(+)$1	227	13	17	12.0000
GGAG	chr16:88725020-88725300(-)$1	280	28	32	12.0000
GGAG	chr20:2635297-2635508(+)$1	211	48	52	12.0000
GGAG	chr1:155657868-155658100(-)$1	232	141	145	12.0000
GGAG	chr12:6690214-6690439(-)$1	225	160	164	12.0000
GGAG	chr1:155151189-155151484(-)$1	295	5	9	12.0000
GGAG	chr9:111674592-111674855(-)$1	263	258	262	12.0000
GGAG	chr17:79953733-79954003(+)$1	270	19	23	12.0000
GGAG	chr1:11082278-11082517(+)$1	239	73	77	12.0000
GGAG	chr17:2598695-2598959(-)$1	264	18	22	12.0000
GGAG	chr2:85768114-85768383(+)$1	269	16	20	12.0000
GGAG	chr14:105167798-105168054(+)$1	256	74	78	12.0000
GGAG	chr10:70166414-70166781(-)$1	367	100	104	12.0000
GGAG	chr12:49959891-49960201(-)$1	310	89	93	12.0000
GGAG	chr1:227171071-227171356(+)$1	285	113	117	12.0000
GGAG	chr20:17640912-17641135(-)$1	223	25	29	12.0000
GGAG	chr10:1046516-1046807(+)$1	291	135	139	12.0000
GGAG	chr16:88922659-88922969(-)$1	310	12	16	12.0000
GGAG	chr14:24911815-24912062(-)$1	247	108	112	12.0000
GGAG	chr14:21542973-21543250(+)$1	277	33	37	12.0000
GGAG	chr16:67979569-67979786(-)$1	217	59	63	12.0000
ggag	chr17:34171853-34172125(+)$1	272	7	11	12.0000
GGAG	chr2:232326456-232326676(-)$1	220	143	147	12.0000
GGAG	chr19:40485960-40486312(+)$1	352	23	27	12.0000
ggag	chr2:220252379-220252683(-)$1	304	0	4	12.0000
GGAG	chr1:35653472-35653705(-)$1	233	20	24	12.0000
GGAG	chr17:37866199-37866474(+)$1	275	14	18	12.0000
GGAG	chr9:117051101-117051338(+)$1	237	97	101	12.0000
GGAG	chr17:80016442-80016724(-)$1	282	247	251	12.0000
GGAG	chr19:42365074-42365346(+)$1	272	34	38	12.0000
GGAG	chr3:58106870-58107178(+)$1	308	119	123	12.0000
GGAG	chrX:54835637-54835878(+)$1	241	47	51	12.0000
GGAG	chr19:1271448-1271657(+)$1	209	68	72	12.0000
ggag	chr17:34171689-34171994(+)$1	305	15	19	12.0000
GGAG	chr19:18653606-18653843(-)$1	237	4	8	12.0000
GGAG	chr7:5754666-5754923(-)$1	257	37	41	12.0000
ggag	chr12:7342415-7342691(+)$1	276	20	24	12.0000
GGAG	chr15:80214976-80215256(-)$1	280	56	60	12.0000
GGAG	chr11:93474454-93474679(-)$1	225	37	41	12.0000
GGAG	chr1:146740340-146740622(+)$1	282	77	81	12.0000
GGAG	chr19:2270408-2270664(+)$1	256	106	110	12.0000
GGAG	chr6:32157431-32157683(-)$1	252	59	63	12.0000
GGAG	chr2:220435284-220435571(-)$1	287	45	49	12.0000
GGAG	chr17:41622503-41622810(+)$1	307	12	16	12.0000
GGAG	chr1:245026822-245027055(-)$1	233	76	80	12.0000
GGAG	chr2:153484715-153485019(+)$1	304	52	56	12.0000
GGAG	chr4:1804539-1804798(+)$1	259	121	125	12.0000
GGAG	chr1:17945770-17946033(+)$1	263	70	74	12.0000
GGAG	chr5:176517186-176517508(+)$1	322	76	80	12.0000
GGAG	chr11:62482702-62482953(-)$1	251	23	27	12.0000
GGAG	chr3:184043166-184043393(+)$1	227	160	164	12.0000
GGAG	chr5:176981009-176981290(-)$1	281	4	8	12.0000
GGAG	chr14:23398402-23398665(-)$1	263	87	91	12.0000
GGAG	chr19:52693344-52693630(+)$1	286	87	91	12.0000
GGAG	chr17:39976454-39976719(+)$1	265	1	5	12.0000
GGAG	chr11:126146272-126146523(+)$1	251	83	87	12.0000

#otherMatches

#Struct PSSM
[a[e	chr6:24666897-24667209(-)$1	312	34	38	12.0000
::::	chr3:48625704-48626044(-)$1	340	46	50	12.0000
G::g	chr8:145621761-145622012(-)$1	251	30	34	12.0000
ee""	chr8:30669829-30670045(-)$1	216	3	7	12.0000
BB{H	chr17:36865319-36865580(+)$1	261	31	35	12.0000
bb33	chr8:145693803-145694073(+)$1	270	41	45	12.0000
ee::	chr6:42984812-42985089(+)$1	277	141	145	12.0000
:ddd	chr12:120587319-120587559(-)$1	240	1	5	12.0000
tbb2	chr13:79945886-79946165(-)$1	279	108	112	12.0000
eeee	chr17:80543865-80544125(+)$1	260	182	186	12.0000
b"""	chr17:40937185-40937440(+)$1	255	140	144	12.0000
d!!b	chr11:372594-372824(+)$1	230	110	114	12.0000
d]bb	chr12:6439533-6439831(-)$1	298	84	88	12.0000
hh]f	chr22:20127263-20127521(+)$1	258	129	133	12.0000
fmmm	chr22:51017488-51017782(-)$1	294	5	9	12.0000
ssss	chr1:110163583-110163877(+)$1	294	19	23	12.0000
b:::	chr17:74099642-74099881(-)$1	239	65	69	12.0000
FFFF	chr11:61630430-61630634(+)$1	204	82	86	12.0000
:eee	chr20:32247328-32247580(-)$1	252	94	98	12.0000
ssss	chr2:27255813-27256089(+)$1	276	51	55	12.0000
ccc:	chr7:117824218-117824527(+)$1	309	73	77	12.0000
mmbb	chr16:9185793-9186062(+)$1	269	61	65	12.0000
::::	chr12:123466250-123466528(+)$1	278	38	42	12.0000
LDDD	chr17:55333982-55334231(+)$1	249	6	10	12.0000
eedd	chr15:80215406-80215667(-)$1	261	84	88	12.0000
{AQQ	chrX:106045941-106046197(+)$1	256	55	59	12.0000
bb##	chr12:110719431-110719698(+)$1	267	40	44	12.0000
!fff	chr1:31902466-31902682(+)$1	216	55	59	12.0000
!bb[	chr14:23792137-23792365(+)$1	228	95	99	12.0000
ee:g	chr19:55752658-55752938(-)$1	280	81	85	12.0000
EEEZ	chr16:16280915-16281163(-)$1	248	202	206	12.0000
AKKA	chr19:54967044-54967277(+)$1	233	10	14	12.0000
::ee	chr19:10227304-10227597(-)$1	293	66	70	12.0000
CC{C	chr20:60907632-60907868(-)$1	236	16	20	12.0000
eeee	chr4:26322415-26322773(+)$1	358	112	116	12.0000
IIII	chr3:48699925-48700212(-)$1	287	17	21	12.0000
mmmm	chr7:100136879-100137106(+)$1	227	13	17	12.0000
gggg	chr16:88725020-88725300(-)$1	280	28	32	12.0000
ee]i	chr20:2635297-2635508(+)$1	211	48	52	12.0000
gggg	chr1:155657868-155658100(-)$1	232	141	145	12.0000
f]bb	chr12:6690214-6690439(-)$1	225	160	164	12.0000
::::	chr1:155151189-155151484(-)$1	295	5	9	12.0000
FFFF	chr9:111674592-111674855(-)$1	263	258	262	12.0000
HH::	chr17:79953733-79954003(+)$1	270	19	23	12.0000
LLLG	chr1:11082278-11082517(+)$1	239	73	77	12.0000
ddd3	chr17:2598695-2598959(-)$1	264	18	22	12.0000
OOOO	chr2:85768114-85768383(+)$1	269	16	20	12.0000
HHHH	chr14:105167798-105168054(+)$1	256	74	78	12.0000
:::b	chr10:70166414-70166781(-)$1	367	100	104	12.0000
nnnd	chr12:49959891-49960201(-)$1	310	89	93	12.0000
hhhh	chr1:227171071-227171356(+)$1	285	113	117	12.0000
OOOO	chr20:17640912-17641135(-)$1	223	25	29	12.0000
IIII	chr10:1046516-1046807(+)$1	291	135	139	12.0000
lccc	chr16:88922659-88922969(-)$1	310	12	16	12.0000
FFFF	chr14:24911815-24912062(-)$1	247	108	112	12.0000
hh%%	chr14:21542973-21543250(+)$1	277	33	37	12.0000
rrrr	chr16:67979569-67979786(-)$1	217	59	63	12.0000
::::	chr17:34171853-34172125(+)$1	272	7	11	12.0000
DDDc	chr2:232326456-232326676(-)$1	220	143	147	12.0000
KBBg	chr19:40485960-40486312(+)$1	352	23	27	12.0000
::::	chr2:220252379-220252683(-)$1	304	0	4	12.0000
MMMC	chr1:35653472-35653705(-)$1	233	20	24	12.0000
B{FF	chr17:37866199-37866474(+)$1	275	14	18	12.0000
iidd	chr9:117051101-117051338(+)$1	237	97	101	12.0000
cc::	chr17:80016442-80016724(-)$1	282	247	251	12.0000
d:ff	chr19:42365074-42365346(+)$1	272	34	38	12.0000
]eee	chr3:58106870-58107178(+)$1	308	119	123	12.0000
JJJJ	chrX:54835637-54835878(+)$1	241	47	51	12.0000
ddd]	chr19:1271448-1271657(+)$1	209	68	72	12.0000
$$$$	chr17:34171689-34171994(+)$1	305	15	19	12.0000
::II	chr19:18653606-18653843(-)$1	237	4	8	12.0000
eeee	chr7:5754666-5754923(-)$1	257	37	41	12.0000
HHH{	chr12:7342415-7342691(+)$1	276	20	24	12.0000
]ccc	chr15:80214976-80215256(-)$1	280	56	60	12.0000
ggoo	chr11:93474454-93474679(-)$1	225	37	41	12.0000
gggg	chr1:146740340-146740622(+)$1	282	77	81	12.0000
f!!a	chr19:2270408-2270664(+)$1	256	106	110	12.0000
FFKK	chr6:32157431-32157683(-)$1	252	59	63	12.0000
DDKK	chr2:220435284-220435571(-)$1	287	45	49	12.0000
IIIE	chr17:41622503-41622810(+)$1	307	12	16	12.0000
ee[a	chr1:245026822-245027055(-)$1	233	76	80	12.0000
eeee	chr2:153484715-153485019(+)$1	304	52	56	12.0000
cc[c	chr4:1804539-1804798(+)$1	259	121	125	12.0000
mmmm	chr1:17945770-17946033(+)$1	263	70	74	12.0000
ffff	chr5:176517186-176517508(+)$1	322	76	80	12.0000
!!dd	chr11:62482702-62482953(-)$1	251	23	27	12.0000
ffff	chr3:184043166-184043393(+)$1	227	160	164	12.0000
e!!b	chr5:176981009-176981290(-)$1	281	4	8	12.0000
ccc:	chr14:23398402-23398665(-)$1	263	87	91	12.0000
dddd	chr19:52693344-52693630(+)$1	286	87	91	12.0000
ffff	chr17:39976454-39976719(+)$1	265	1	5	12.0000
gggg	chr11:126146272-126146523(+)$1	251	83	87	12.0000

#DB
.(.(	chr6:24666897-24667209(-)$1	1	34	38	12.0000
....	chr3:48625704-48626044(-)$1	1	46	50	12.0000
(..(	chr8:145621761-145622012(-)$1	1	30	34	12.0000
((..	chr8:30669829-30670045(-)$1	1	3	7	12.0000
((.(	chr17:36865319-36865580(+)$1	1	31	35	12.0000
))..	chr8:145693803-145694073(+)$1	1	41	45	12.0000
))..	chr6:42984812-42985089(+)$1	1	141	145	12.0000
.(((	chr12:120587319-120587559(-)$1	1	1	5	12.0000
.)).	chr13:79945886-79946165(-)$1	1	108	112	12.0000
))))	chr17:80543865-80544125(+)$1	1	182	186	12.0000
(...	chr17:40937185-40937440(+)$1	1	140	144	12.0000
(..(	chr11:372594-372824(+)$1	1	110	114	12.0000
).))	chr12:6439533-6439831(-)$1	1	84	88	12.0000
)).)	chr22:20127263-20127521(+)$1	1	129	133	12.0000
(...	chr22:51017488-51017782(-)$1	1	5	9	12.0000
....	chr1:110163583-110163877(+)$1	1	19	23	12.0000
)...	chr17:74099642-74099881(-)$1	1	65	69	12.0000
((((	chr11:61630430-61630634(+)$1	1	82	86	12.0000
.(((	chr20:32247328-32247580(-)$1	1	94	98	12.0000
....	chr2:27255813-27256089(+)$1	1	51	55	12.0000
))).	chr7:117824218-117824527(+)$1	1	73	77	12.0000
..))	chr16:9185793-9186062(+)$1	1	61	65	12.0000
....	chr12:123466250-123466528(+)$1	1	38	42	12.0000
.(((	chr17:55333982-55334231(+)$1	1	6	10	12.0000
))((	chr15:80215406-80215667(-)$1	1	84	88	12.0000
.(..	chrX:106045941-106046197(+)$1	1	55	59	12.0000
((..	chr12:110719431-110719698(+)$1	1	40	44	12.0000
.(((	chr1:31902466-31902682(+)$1	1	55	59	12.0000
.((.	chr14:23792137-23792365(+)$1	1	95	99	12.0000
)).(	chr19:55752658-55752938(-)$1	1	81	85	12.0000
))).	chr16:16280915-16281163(-)$1	1	202	206	12.0000
(..(	chr19:54967044-54967277(+)$1	1	10	14	12.0000
..((	chr19:10227304-10227597(-)$1	1	66	70	12.0000
((.(	chr20:60907632-60907868(-)$1	1	16	20	12.0000
))))	chr4:26322415-26322773(+)$1	1	112	116	12.0000
((((	chr3:48699925-48700212(-)$1	1	17	21	12.0000
....	chr7:100136879-100137106(+)$1	1	13	17	12.0000
))))	chr16:88725020-88725300(-)$1	1	28	32	12.0000
)).)	chr20:2635297-2635508(+)$1	1	48	52	12.0000
))))	chr1:155657868-155658100(-)$1	1	141	145	12.0000
).))	chr12:6690214-6690439(-)$1	1	160	164	12.0000
....	chr1:155151189-155151484(-)$1	1	5	9	12.0000
))))	chr9:111674592-111674855(-)$1	1	258	262	12.0000
((..	chr17:79953733-79954003(+)$1	1	19	23	12.0000
...(	chr1:11082278-11082517(+)$1	1	73	77	12.0000
))).	chr17:2598695-2598959(-)$1	1	18	22	12.0000
....	chr2:85768114-85768383(+)$1	1	16	20	12.0000
))))	chr14:105167798-105168054(+)$1	1	74	78	12.0000
...(	chr10:70166414-70166781(-)$1	1	100	104	12.0000
...)	chr12:49959891-49960201(-)$1	1	89	93	12.0000
((((	chr1:227171071-227171356(+)$1	1	113	117	12.0000
....	chr20:17640912-17641135(-)$1	1	25	29	12.0000
((((	chr10:1046516-1046807(+)$1	1	135	139	12.0000
.)))	chr16:88922659-88922969(-)$1	1	12	16	12.0000
((((	chr14:24911815-24912062(-)$1	1	108	112	12.0000
((..	chr14:21542973-21543250(+)$1	1	33	37	12.0000
....	chr16:67979569-67979786(-)$1	1	59	63	12.0000
....	chr17:34171853-34172125(+)$1	1	7	11	12.0000
((((	chr2:232326456-232326676(-)$1	1	143	147	12.0000
.(((	chr19:40485960-40486312(+)$1	1	23	27	12.0000
....	chr2:220252379-220252683(-)$1	1	0	4	12.0000
...(	chr1:35653472-35653705(-)$1	1	20	24	12.0000
(.((	chr17:37866199-37866474(+)$1	1	14	18	12.0000
))))	chr9:117051101-117051338(+)$1	1	97	101	12.0000
))..	chr17:80016442-80016724(-)$1	1	247	251	12.0000
).((	chr19:42365074-42365346(+)$1	1	34	38	12.0000
.)))	chr3:58106870-58107178(+)$1	1	119	123	12.0000
((((	chrX:54835637-54835878(+)$1	1	47	51	12.0000
))).	chr19:1271448-1271657(+)$1	1	68	72	12.0000
....	chr17:34171689-34171994(+)$1	1	15	19	12.0000
..((	chr19:18653606-18653843(-)$1	1	4	8	12.0000
((((	chr7:5754666-5754923(-)$1	1	37	41	12.0000
(((.	chr12:7342415-7342691(+)$1	1	20	24	12.0000
.)))	chr15:80214976-80215256(-)$1	1	56	60	12.0000
((..	chr11:93474454-93474679(-)$1	1	37	41	12.0000
((((	chr1:146740340-146740622(+)$1	1	77	81	12.0000
(..(	chr19:2270408-2270664(+)$1	1	106	110	12.0000
((..	chr6:32157431-32157683(-)$1	1	59	63	12.0000
((..	chr2:220435284-220435571(-)$1	1	45	49	12.0000
((((	chr17:41622503-41622810(+)$1	1	12	16	12.0000
((.(	chr1:245026822-245027055(-)$1	1	76	80	12.0000
((((	chr2:153484715-153485019(+)$1	1	52	56	12.0000
((.(	chr4:1804539-1804798(+)$1	1	121	125	12.0000
....	chr1:17945770-17946033(+)$1	1	70	74	12.0000
((((	chr5:176517186-176517508(+)$1	1	76	80	12.0000
..((	chr11:62482702-62482953(-)$1	1	23	27	12.0000
))))	chr3:184043166-184043393(+)$1	1	160	164	12.0000
(..(	chr5:176981009-176981290(-)$1	1	4	8	12.0000
))).	chr14:23398402-23398665(-)$1	1	87	91	12.0000
((((	chr19:52693344-52693630(+)$1	1	87	91	12.0000
((((	chr17:39976454-39976719(+)$1	1	1	5	12.0000
))))	chr11:126146272-126146523(+)$1	1	83	87	12.0000

#PSSM
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	
A : 0.90	a : 0.09	
G : 0.90	g : 0.09	

#score	1104.0000000000005
#seq	92
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_transcript_m2_run1.nuc.txt

#NT
CAG	chr1:36068701-36069002(-)$1	301	24	27	9.0000
CAG	chr18:43667038-43667282(-)$1	244	99	102	9.0000
CAG	chr11:14529100-14529356(-)$1	256	41	44	9.0000
CAG	chr12:56554337-56554554(+)$1	217	69	72	9.0000
CAG	chr5:233559-233809(+)$1	250	29	32	9.0000
cag	chr12:53291072-53291329(-)$1	257	12	15	9.0000
CAG	chr6:26124754-26124998(+)$1	244	18	21	9.0000
CAG	chr10:75157838-75158139(-)$1	301	0	3	9.0000
CAG	chr20:60962566-60962778(+)$1	212	97	100	9.0000
CAG	chr12:98992253-98992506(+)$1	253	8	11	9.0000
CAG	chr18:57026241-57026566(-)$1	325	12	15	9.0000
CAG	chr1:160276172-160276384(-)$1	212	39	42	9.0000
CAG	chr6:26204850-26205120(+)$1	270	103	106	9.0000
CAG	chr2:26437902-26438144(-)$1	242	77	80	9.0000
CAG	chr19:19638824-19639090(+)$1	266	64	67	9.0000
CAG	chr5:233614-233860(+)$1	246	41	44	9.0000
CAG	chr22:29693785-29694041(+)$1	256	28	31	9.0000
CAG	chr2:55459845-55460072(+)$1	227	95	98	9.0000
CAG	chr11:18422292-18422590(+)$1	298	144	147	9.0000
CAG	chr10:73588548-73588802(-)$1	254	16	19	9.0000
CAG	chr17:16285593-16285835(+)$1	242	0	3	9.0000
CAG	chr12:56553753-56554007(+)$1	254	2	5	9.0000
CAG	chr19:8551011-8551286(+)$1	275	22	25	9.0000
CAG	chr1:182353504-182353753(-)$1	249	54	57	9.0000
CAG	chr2:73476896-73477144(+)$1	248	68	71	9.0000
CAG	chr1:182354794-182355009(-)$1	215	11	14	9.0000
CAG	chr16:88713407-88713669(-)$1	262	20	23	9.0000
CAG	chr16:88876436-88876656(-)$1	220	14	17	9.0000
CAG	chr12:56553948-56554199(+)$1	251	75	78	9.0000
CAG	chr8:100904081-100904344(-)$1	263	84	87	9.0000
CAG	chr11:61069681-61069933(-)$1	252	74	77	9.0000
CAG	chr11:18422283-18422492(+)$1	209	153	156	9.0000
CAG	chr16:88876375-88876613(-)$1	238	54	57	9.0000
CAG	chrX:119005794-119006058(+)$1	264	24	27	9.0000
CAG	chr11:61067406-61067679(-)$1	273	25	28	9.0000
CAG	chr10:73579501-73579720(-)$1	219	60	63	9.0000
CAG	chr17:26903718-26903962(-)$1	244	42	45	9.0000
CAG	chrX:64949446-64949674(+)$1	228	51	54	9.0000
CAG	chr7:135614600-135614861(-)$1	261	58	61	9.0000
CAG	chr2:97559636-97559889(-)$1	253	12	15	9.0000
CAG	chr6:26124352-26124604(+)$1	252	5	8	9.0000
CAG	chr2:73461342-73461589(+)$1	247	200	203	9.0000
CAG	chr7:10978334-10978556(-)$1	222	112	115	9.0000
CAG	chr11:61732252-61732461(-)$1	209	19	22	9.0000
CAG	chr22:21271915-21272199(+)$1	284	7	10	9.0000
CAG	chr6:170852662-170852905(-)$1	243	84	87	9.0000
CAG	chr6:30691540-30691789(+)$1	249	31	34	9.0000
CAG	chr11:118925835-118926079(-)$1	244	25	28	9.0000
CAG	chr15:45003664-45003915(+)$1	251	64	67	9.0000
CAG	chr12:98993632-98993899(+)$1	267	3	6	9.0000
CAG	chrX:118603815-118604061(+)$1	246	37	40	9.0000
CAG	chr15:45007678-45008001(+)$1	323	89	92	9.0000
CAG	chr5:137902610-137902849(-)$1	239	52	55	9.0000
CAG	chr11:18428687-18428926(+)$1	239	30	33	9.0000
CAG	chr1:24021155-24021381(+)$1	226	28	31	9.0000
CAG	chr6:37138811-37139084(+)$1	273	8	11	9.0000
CAG	chr6:27114043-27114295(-)$1	252	3	6	9.0000
CAG	chr19:13049895-13050134(+)$1	239	15	18	9.0000
CAG	chr1:110561154-110561373(+)$1	219	16	19	9.0000
CAG	chr11:61081752-61082029(-)$1	277	31	34	9.0000
CAG	chr11:64084714-64084938(-)$1	224	15	18	9.0000
CAG	chr6:33257512-33257783(+)$1	271	31	34	9.0000
CAG	chr10:126097355-126097612(-)$1	257	103	106	9.0000
CAG	chrX:48758406-48758657(+)$1	251	57	60	9.0000
CAG	chr1:120277235-120277488(+)$1	253	18	21	9.0000
CAG	chr22:38072927-38073165(+)$1	238	14	17	9.0000
CAG	chr11:18428616-18428883(+)$1	267	44	47	9.0000
CAG	chr12:50149317-50149551(+)$1	234	9	12	9.0000
CAG	chr2:63833013-63833264(+)$1	251	9	12	9.0000
CAG	chr1:173456773-173457030(+)$1	257	220	223	9.0000
CAG	chr2:62104025-62104272(-)$1	247	34	37	9.0000
CAG	chr7:97481547-97481800(-)$1	253	17	20	9.0000
CAG	chr1:113498640-113498926(-)$1	286	86	89	9.0000
CAG	chr1:11072613-11072870(+)$1	257	40	43	9.0000
CAG	chr8:11667234-11667459(+)$1	225	7	10	9.0000
CAG	chr1:156712444-156712697(-)$1	253	8	11	9.0000
CAG	chr10:73581582-73581827(-)$1	245	15	18	9.0000
CAG	chr9:19380091-19380333(-)$1	242	127	130	9.0000
CAG	chr8:11687651-11687881(+)$1	230	109	112	9.0000
CAG	chr1:156105902-156106151(+)$1	249	41	44	9.0000
CAG	chr1:228284979-228285252(+)$1	273	0	3	9.0000
CAG	chr16:85838592-85838811(+)$1	219	47	50	9.0000
CAG	chr17:46972994-46973278(+)$1	284	19	22	9.0000
CAG	chr16:30080168-30080395(+)$1	227	69	72	9.0000
CAG	chr19:13051578-13051797(+)$1	219	10	13	9.0000
CAG	chr1:228645307-228645551(-)$1	244	51	54	9.0000
CAG	chr5:137906619-137906877(-)$1	258	1	4	9.0000
CAG	chr21:27107064-27107316(-)$1	252	88	91	9.0000
CAG	chr17:7210824-7211114(+)$1	290	30	33	9.0000
CAG	chr1:1167171-1167447(-)$1	276	204	207	9.0000
CAG	chr6:26104172-26104424(+)$1	252	84	87	9.0000
CAG	chrX:141292848-141293092(-)$1	244	0	3	9.0000
CAG	chr17:73774790-73775033(-)$1	243	26	29	9.0000
CAG	chr10:126092369-126092590(-)$1	221	42	45	9.0000
CAG	chr7:93633409-93633646(-)$1	237	114	117	9.0000
CAG	chr19:41268784-41269032(+)$1	248	18	21	9.0000
CAG	chr12:69990838-69991094(+)$1	256	45	48	9.0000
CAG	chr15:72501069-72501332(-)$1	263	11	14	9.0000
CAG	chrX:64951599-64951816(+)$1	217	14	17	9.0000

#otherMatches

#Struct PSSM
ggg	chr19:38799771-38800013(-)$1	242	13	16	9.0000
ooo	chr1:36068701-36069002(-)$1	301	24	27	9.0000
ddd	chr18:43667038-43667282(-)$1	244	99	102	9.0000
GGG	chr11:14529100-14529356(-)$1	256	41	44	9.0000
22f	chr12:56554337-56554554(+)$1	217	69	72	9.0000
bb]	chr5:233559-233809(+)$1	250	29	32	9.0000
!bb	chr12:53291072-53291329(-)$1	257	12	15	9.0000
"ee	chr6:26124754-26124998(+)$1	244	18	21	9.0000
::i	chr10:75157838-75158139(-)$1	301	0	3	9.0000
FFF	chr20:60962566-60962778(+)$1	212	97	100	9.0000
:::	chr12:98992253-98992506(+)$1	253	8	11	9.0000
DDD	chr18:57026241-57026566(-)$1	325	12	15	9.0000
FFF	chr1:160276172-160276384(-)$1	212	39	42	9.0000
fff	chr6:26204850-26205120(+)$1	270	103	106	9.0000
rrr	chr2:26437902-26438144(-)$1	242	77	80	9.0000
#dd	chr19:19638824-19639090(+)$1	266	64	67	9.0000
$$$	chr5:233614-233860(+)$1	246	41	44	9.0000
BBD	chr22:29693785-29694041(+)$1	256	28	31	9.0000
::e	chr2:55459845-55460072(+)$1	227	95	98	9.0000
!!b	chr11:18422292-18422590(+)$1	298	144	147	9.0000
ddd	chr10:73588548-73588802(-)$1	254	16	19	9.0000
FFF	chr17:16285593-16285835(+)$1	242	0	3	9.0000
ddd	chr12:56553753-56554007(+)$1	254	2	5	9.0000
ppc	chr19:8551011-8551286(+)$1	275	22	25	9.0000
iii	chr1:182353504-182353753(-)$1	249	54	57	9.0000
]bb	chr2:73476896-73477144(+)$1	248	68	71	9.0000
EEE	chr1:182354794-182355009(-)$1	215	11	14	9.0000
KKB	chr16:88713407-88713669(-)$1	262	20	23	9.0000
H:B	chr16:88876436-88876656(-)$1	220	14	17	9.0000
bb!	chr12:56553948-56554199(+)$1	251	75	78	9.0000
a[f	chr8:100904081-100904344(-)$1	263	84	87	9.0000
ccc	chr11:61069681-61069933(-)$1	252	74	77	9.0000
bnn	chr11:18422283-18422492(+)$1	209	153	156	9.0000
GGG	chr16:88876375-88876613(-)$1	238	54	57	9.0000
CC{	chrX:119005794-119006058(+)$1	264	24	27	9.0000
:::	chr11:61067406-61067679(-)$1	273	25	28	9.0000
4bb	chr10:73579501-73579720(-)$1	219	60	63	9.0000
DDD	chr17:26903718-26903962(-)$1	244	42	45	9.0000
eee	chrX:64949446-64949674(+)$1	228	51	54	9.0000
%bb	chr7:135614600-135614861(-)$1	261	58	61	9.0000
::D	chr2:97559636-97559889(-)$1	253	12	15	9.0000
EEF	chr6:26124352-26124604(+)$1	252	5	8	9.0000
iib	chr2:73461342-73461589(+)$1	247	200	203	9.0000
hhh	chr7:10978334-10978556(-)$1	222	112	115	9.0000
ddd	chr11:61732252-61732461(-)$1	209	19	22	9.0000
MFF	chr22:21271915-21272199(+)$1	284	7	10	9.0000
ddd	chr6:170852662-170852905(-)$1	243	84	87	9.0000
ddd	chr6:30691540-30691789(+)$1	249	31	34	9.0000
nnb	chr11:118925835-118926079(-)$1	244	25	28	9.0000
!!b	chr15:45003664-45003915(+)$1	251	64	67	9.0000
fff	chr12:98993632-98993899(+)$1	267	3	6	9.0000
F::	chrX:118603815-118604061(+)$1	246	37	40	9.0000
$ee	chr15:45007678-45008001(+)$1	323	89	92	9.0000
ccb	chr5:137902610-137902849(-)$1	239	52	55	9.0000
%%f	chr11:18428687-18428926(+)$1	239	30	33	9.0000
c::	chr1:24021155-24021381(+)$1	226	28	31	9.0000
EEE	chr6:37138811-37139084(+)$1	273	8	11	9.0000
CCC	chr6:27114043-27114295(-)$1	252	3	6	9.0000
CCC	chr19:13049895-13050134(+)$1	239	15	18	9.0000
:::	chr1:110561154-110561373(+)$1	219	16	19	9.0000
FFF	chr11:61081752-61082029(-)$1	277	31	34	9.0000
JJJ	chr11:64084714-64084938(-)$1	224	15	18	9.0000
^^^	chr6:33257512-33257783(+)$1	271	31	34	9.0000
eee	chr10:126097355-126097612(-)$1	257	103	106	9.0000
BB{	chrX:48758406-48758657(+)$1	251	57	60	9.0000
bee	chr1:120277235-120277488(+)$1	253	18	21	9.0000
B::	chr22:38072927-38073165(+)$1	238	14	17	9.0000
IIF	chr11:18428616-18428883(+)$1	267	44	47	9.0000
hhh	chr12:50149317-50149551(+)$1	234	9	12	9.0000
DD{	chr2:63833013-63833264(+)$1	251	9	12	9.0000
EE}	chr1:173456773-173457030(+)$1	257	220	223	9.0000
fff	chr2:62104025-62104272(-)$1	247	34	37	9.0000
##e	chr7:97481547-97481800(-)$1	253	17	20	9.0000
pdd	chr1:113498640-113498926(-)$1	286	86	89	9.0000
]dd	chr1:11072613-11072870(+)$1	257	40	43	9.0000
eee	chr8:11667234-11667459(+)$1	225	7	10	9.0000
GGG	chr1:156712444-156712697(-)$1	253	8	11	9.0000
===	chr10:73581582-73581827(-)$1	245	15	18	9.0000
ddd	chr9:19380091-19380333(-)$1	242	127	130	9.0000
iii	chr8:11687651-11687881(+)$1	230	109	112	9.0000
fbb	chr1:156105902-156106151(+)$1	249	41	44	9.0000
::c	chr1:228284979-228285252(+)$1	273	0	3	9.0000
EBB	chr16:85838592-85838811(+)$1	219	47	50	9.0000
:EE	chr17:46972994-46973278(+)$1	284	19	22	9.0000
eee	chr16:30080168-30080395(+)$1	227	69	72	9.0000
crr	chr19:13051578-13051797(+)$1	219	10	13	9.0000
GEE	chr1:228645307-228645551(-)$1	244	51	54	9.0000
:cc	chr5:137906619-137906877(-)$1	258	1	4	9.0000
C}D	chr21:27107064-27107316(-)$1	252	88	91	9.0000
EKK	chr17:7210824-7211114(+)$1	290	30	33	9.0000
I:d	chr1:1167171-1167447(-)$1	276	204	207	9.0000
d:a	chr6:26104172-26104424(+)$1	252	84	87	9.0000
::i	chrX:141292848-141293092(-)$1	244	0	3	9.0000
:::	chr17:73774790-73775033(-)$1	243	26	29	9.0000
FKK	chr10:126092369-126092590(-)$1	221	42	45	9.0000
]bb	chr7:93633409-93633646(-)$1	237	114	117	9.0000
::G	chr19:41268784-41269032(+)$1	248	18	21	9.0000
:cc	chr12:69990838-69991094(+)$1	256	45	48	9.0000
e[b	chr15:72501069-72501332(-)$1	263	11	14	9.0000
fff	chrX:64951599-64951816(+)$1	217	14	17	9.0000

#DB
(((	chr19:38799771-38800013(-)$1	1	13	16	9.0000
...	chr1:36068701-36069002(-)$1	1	24	27	9.0000
)))	chr18:43667038-43667282(-)$1	1	99	102	9.0000
(((	chr11:14529100-14529356(-)$1	1	41	44	9.0000
..)	chr12:56554337-56554554(+)$1	1	69	72	9.0000
)).	chr5:233559-233809(+)$1	1	29	32	9.0000
.((	chr12:53291072-53291329(-)$1	1	12	15	9.0000
.((	chr6:26124754-26124998(+)$1	1	18	21	9.0000
..(	chr10:75157838-75158139(-)$1	1	0	3	9.0000
(((	chr20:60962566-60962778(+)$1	1	97	100	9.0000
...	chr12:98992253-98992506(+)$1	1	8	11	9.0000
(((	chr18:57026241-57026566(-)$1	1	12	15	9.0000
(((	chr1:160276172-160276384(-)$1	1	39	42	9.0000
)))	chr6:26204850-26205120(+)$1	1	103	106	9.0000
...	chr2:26437902-26438144(-)$1	1	77	80	9.0000
.((	chr19:19638824-19639090(+)$1	1	64	67	9.0000
...	chr5:233614-233860(+)$1	1	41	44	9.0000
(((	chr22:29693785-29694041(+)$1	1	28	31	9.0000
..(	chr2:55459845-55460072(+)$1	1	95	98	9.0000
..(	chr11:18422292-18422590(+)$1	1	144	147	9.0000
)))	chr10:73588548-73588802(-)$1	1	16	19	9.0000
(((	chr17:16285593-16285835(+)$1	1	0	3	9.0000
(((	chr12:56553753-56554007(+)$1	1	2	5	9.0000
..)	chr19:8551011-8551286(+)$1	1	22	25	9.0000
)))	chr1:182353504-182353753(-)$1	1	54	57	9.0000
.))	chr2:73476896-73477144(+)$1	1	68	71	9.0000
(((	chr1:182354794-182355009(-)$1	1	11	14	9.0000
..(	chr16:88713407-88713669(-)$1	1	20	23	9.0000
(.(	chr16:88876436-88876656(-)$1	1	14	17	9.0000
((.	chr12:56553948-56554199(+)$1	1	75	78	9.0000
(.(	chr8:100904081-100904344(-)$1	1	84	87	9.0000
(((	chr11:61069681-61069933(-)$1	1	74	77	9.0000
(..	chr11:18422283-18422492(+)$1	1	153	156	9.0000
(((	chr16:88876375-88876613(-)$1	1	54	57	9.0000
((.	chrX:119005794-119006058(+)$1	1	24	27	9.0000
...	chr11:61067406-61067679(-)$1	1	25	28	9.0000
.))	chr10:73579501-73579720(-)$1	1	60	63	9.0000
(((	chr17:26903718-26903962(-)$1	1	42	45	9.0000
)))	chrX:64949446-64949674(+)$1	1	51	54	9.0000
.((	chr7:135614600-135614861(-)$1	1	58	61	9.0000
..(	chr2:97559636-97559889(-)$1	1	12	15	9.0000
(((	chr6:26124352-26124604(+)$1	1	5	8	9.0000
))(	chr2:73461342-73461589(+)$1	1	200	203	9.0000
)))	chr7:10978334-10978556(-)$1	1	112	115	9.0000
)))	chr11:61732252-61732461(-)$1	1	19	22	9.0000
.((	chr22:21271915-21272199(+)$1	1	7	10	9.0000
)))	chr6:170852662-170852905(-)$1	1	84	87	9.0000
(((	chr6:30691540-30691789(+)$1	1	31	34	9.0000
..)	chr11:118925835-118926079(-)$1	1	25	28	9.0000
..(	chr15:45003664-45003915(+)$1	1	64	67	9.0000
(((	chr12:98993632-98993899(+)$1	1	3	6	9.0000
(..	chrX:118603815-118604061(+)$1	1	37	40	9.0000
.((	chr15:45007678-45008001(+)$1	1	89	92	9.0000
)))	chr5:137902610-137902849(-)$1	1	52	55	9.0000
..(	chr11:18428687-18428926(+)$1	1	30	33	9.0000
)..	chr1:24021155-24021381(+)$1	1	28	31	9.0000
(((	chr6:37138811-37139084(+)$1	1	8	11	9.0000
(((	chr6:27114043-27114295(-)$1	1	3	6	9.0000
(((	chr19:13049895-13050134(+)$1	1	15	18	9.0000
...	chr1:110561154-110561373(+)$1	1	16	19	9.0000
(((	chr11:61081752-61082029(-)$1	1	31	34	9.0000
(((	chr11:64084714-64084938(-)$1	1	15	18	9.0000
...	chr6:33257512-33257783(+)$1	1	31	34	9.0000
(((	chr10:126097355-126097612(-)$1	1	103	106	9.0000
((.	chrX:48758406-48758657(+)$1	1	57	60	9.0000
(((	chr1:120277235-120277488(+)$1	1	18	21	9.0000
(..	chr22:38072927-38073165(+)$1	1	14	17	9.0000
(((	chr11:18428616-18428883(+)$1	1	44	47	9.0000
(((	chr12:50149317-50149551(+)$1	1	9	12	9.0000
((.	chr2:63833013-63833264(+)$1	1	9	12	9.0000
)).	chr1:173456773-173457030(+)$1	1	220	223	9.0000
)))	chr2:62104025-62104272(-)$1	1	34	37	9.0000
..(	chr7:97481547-97481800(-)$1	1	17	20	9.0000
.))	chr1:113498640-113498926(-)$1	1	86	89	9.0000
.))	chr1:11072613-11072870(+)$1	1	40	43	9.0000
(((	chr8:11667234-11667459(+)$1	1	7	10	9.0000
(((	chr1:156712444-156712697(-)$1	1	8	11	9.0000
(((	chr10:73581582-73581827(-)$1	1	15	18	9.0000
)))	chr9:19380091-19380333(-)$1	1	127	130	9.0000
)))	chr8:11687651-11687881(+)$1	1	109	112	9.0000
(((	chr1:156105902-156106151(+)$1	1	41	44	9.0000
..(	chr1:228284979-228285252(+)$1	1	0	3	9.0000
(((	chr16:85838592-85838811(+)$1	1	47	50	9.0000
.((	chr17:46972994-46973278(+)$1	1	19	22	9.0000
)))	chr16:30080168-30080395(+)$1	1	69	72	9.0000
(..	chr19:13051578-13051797(+)$1	1	10	13	9.0000
(((	chr1:228645307-228645551(-)$1	1	51	54	9.0000
.((	chr5:137906619-137906877(-)$1	1	1	4	9.0000
).)	chr21:27107064-27107316(-)$1	1	88	91	9.0000
(..	chr17:7210824-7211114(+)$1	1	30	33	9.0000
).(	chr1:1167171-1167447(-)$1	1	204	207	9.0000
).(	chr6:26104172-26104424(+)$1	1	84	87	9.0000
..(	chrX:141292848-141293092(-)$1	1	0	3	9.0000
...	chr17:73774790-73775033(-)$1	1	26	29	9.0000
(..	chr10:126092369-126092590(-)$1	1	42	45	9.0000
.))	chr7:93633409-93633646(-)$1	1	114	117	9.0000
..(	chr19:41268784-41269032(+)$1	1	18	21	9.0000
.((	chr12:69990838-69991094(+)$1	1	45	48	9.0000
(.(	chr15:72501069-72501332(-)$1	1	11	14	9.0000
(((	chrX:64951599-64951816(+)$1	1	14	17	9.0000

#PSSM
C : 0.99	c : 0.01	
A : 0.99	a : 0.01	
G : 0.99	g : 0.01	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_transcript_m2_run2.nuc.txt

#NT
ACuuuuuuuuuauuuuuuuuuugagacaaagccacacucugucuccuuggcuggaguguggugg	chr4:166263423-166263637(+)$1	214	83	147	103.1320
uuuuuuuuuuuuuuuuggaggggagauagggucucacccugucccccaggcuggagugcagugg	chr14:103072872-103073178(+)$1	306	92	156	103.5094
auuuuuuuauuuuuuauuuuuggagauggagucucacucugucgcccaggcuggagugcagugg	chr17:80425268-80425520(+)$1	252	91	155	122.7547
ucuuucuuuuguuuuuuuuugagacacagcgucuugcucuguugcucaggcuguagugcggugg	chr2:242250422-242250635(-)$1	213	85	149	100.4905
AGACCUGuuuucuuuuuuuuucuagacagagucuggcucuguugucuaggcuggagugcagugg	chr2:168784617-168784891(-)$1	274	160	224	100.8679
UCuuuuuuuuuuuuuuuuuuuuuggagauggagucgcucuguugcccaggcuggagugcagugg	chr1:28834026-28834263(+)$1	237	84	148	118.3207
uuuuuuuuuuuuuuuuuuuuuugagacagagucuugcucuguugcccaggcuuggaguguggug	chr1:246343892-246344168(-)$1	276	85	149	106.6226
uuuuuuuuuuuuuuuuuuuuuuuugaggcagugucucacugucucccaggcuggaguguggugu	chr7:104719895-104720143(+)$1	248	69	133	110.0188
uuuuuuguuuuuguuuuuuuuugagacagagucuugcucuguugcccaggcuggcgugcagugg	chr11:27516821-27517126(-)$1	305	85	149	127.6603
CCuuuuuuuuuuuuuuuuuuuuuagacggagucucccucugucgcccaggcuggagugcaaugc	chr4:39706437-39706666(+)$1	229	50	114	125.6792
UGCuuuuuuuuuuuuuucuuuugagacagggucucacugugucgccuaggccggaaugcagugg	chr21:23643104-23643382(+)$1	278	85	149	113.7924
uuuuuuuuuauuauuauuauuuuugagacagucucacuguguugcccaggcuggaaugcaguug	chr12:93780623-93780884(+)$1	261	82	146	103.2264
uuuuuuuuuuuuuuuuuuuuuugagccggagucucacucggucgcccaggcuggagugcagugg	chr3:43745441-43745693(+)$1	252	84	148	130.8679
uuuuuuuuuuuuuuuuuuuuuugagauggagucuugcucugucucccgggcuggagugcaaugg	chr11:85772266-85772478(-)$1	212	84	148	127.0943
UGCuuuuuuuuuuuuuuuuuuggagacagcaucucacuguguugcccauacuggagugcagugg	chr7:138151118-138151376(+)$1	258	87	151	111.9056
uuuuguuuuguuuaauuuuuuucggauggagucucgcucuguugcccagguuggagugcuaugg	chr11:85749213-85749468(-)$1	255	84	148	102.7547
uuuuuuuuuuuuuuuuuuuuuuuugagacagucuagcucugucacccaggcuggugugcaguag	chr5:81572854-81573102(-)$1	248	81	145	120.6792
uuuuuuuuuuuuuuuuuucaccaagauggagucucacucuguugcccagacuggagugcagugg	chr7:91610832-91611099(+)$1	267	87	151	113.1320
uuuucuuuuuuuuuuuuuuuuugagacugugucucacuaugucacccaggcaaaaugcaguggu	chr22:19390466-19390730(-)$1	264	84	148	84.5471
Cuuuuuuuuuuuuuuuuuuuuugaggcaggaccucacucuguugcccaggcuggaguacagugg	chr13:20283157-20283405(-)$1	248	85	149	119.1698
uuuuuuuuuuuuuuuuuuuuuuguggcaaggucucacucugucacccaggcuggaaggcuggag	chr1:167936871-167937127(+)$1	256	85	149	109.6415
uuuuuuuuuuuuuuuuuuuuuugagacagggucuuucucuguugcccaggcuagagugcacugg	chr7:56147870-56148185(+)$1	315	84	148	128.6981
ccuuuuuuuuuuuuuuuuuuuugagacagagucucauucugccauccaggcuggagugcaagug	chr4:32084802-32085067(+)$1	265	84	148	111.6226
cuuuuuuuuuuuuuuuuuuuuuuugaugaagucuugcuguguugcccaggcuggagugcgcugg	chr11:28117574-28117825(-)$1	251	81	145	117.1886
AGACCUGuuuucuuuuuuuuucuagacagagucuggcucuguugucuaggcuggagugcagugg	chr2:168784599-168784817(-)$1	218	86	150	100.8679
guuuuuuuuuuuuuuuuuuuuuuugauggaguguugcucuguugcccaggcuaaagugacccca	chr10:21992862-21993129(+)$1	267	82	146	96.5283
uucuuuuucuuuuuuuuuuuuugagacagagucucacucugacaccuaggcuggagugaguggc	chr12:132481727-132481998(+)$1	271	84	148	107.5660
aucguuuugccuuuucuuuuuugagacagggucucgcuuugucauccaggcuggagggcagugg	chr5:39056580-39056870(-)$1	290	110	174	98.7924
CCAUGUGGAuuuuuuuuuuuuugagacagagucucguucugucacccaggcuggagugcagugg	chr15:66077295-66077568(-)$1	273	83	147	110.9622
cuuuuuuucuuuuuuuuuuuuugagacggagucuugcucugucaccaaggcuggagugcagugg	chr4:60957-61248(+)$1	291	84	148	127.2830
uuuuuuauuuuuauuuuuuuuugagacagagucuugcuuugucccccaggcuggaguguagcag	chr7:140157331-140157604(-)$1	273	85	149	115.6792
uucuuuucuuuuuuuuuuuuuugagacagagucucucucuguugcccaggcuggagugcagugg	chr17:40732902-40733161(-)$1	259	83	147	132.2830
CCuuuuuuuuuuuuuuuuuuuuuagacggagucucccucugucgcccaggcuggagugcaaugc	chr4:39706404-39706637(+)$1	233	83	147	125.6792
Auuuuuuuuuuuuuuuuuuuuugagacggagucucgcuuuguagcccaggccggagugcagugg	chr3:10137490-10137753(+)$1	263	71	135	128.4150
uuaauuuuuuuuuuuuuuacuuuagagacagggucucacuguuacccaggcuggagugcagugg	chr22:22841642-22841893(-)$1	251	86	150	103.7924
ACuuuuuuuuuuuuuuuuuuuuuuuuucugaucuugcuuuguugcccaggcuggauugcaguga	chr11:34481911-34482170(+)$1	259	80	144	95.7735
ucuuuccuuuuuuuuuuuuuuuuugacagugucuugcucuguugcccagccuggagugcagugg	chr4:56270124-56270384(+)$1	260	81	145	117.5660
uuuuuuuuuuuuuuuuuuuuuggagacagagucucacuuuguuacccuggcuggagugcagugg	chr10:76987247-76987518(+)$1	271	88	152	128.7924
uuuuuuuuuuuuuuuuuuuuuuuugaggcagugucucacugucucccaggcuggaguguggugu	chr7:104719880-104720095(+)$1	215	84	148	110.0188
ggauuuuuuuuuuuuuuuuuuggagacagagucuugcugugucgcccaggcuggagugcagugg	chr12:120636043-120636263(-)$1	220	53	117	124.9245
uuuuuuuuuuuuuuuuuuuuuugagacggagucucgcucugucgcccuaggcuggagugcaugu	chr14:21735100-21735361(-)$1	261	85	149	90.2075
uuuuuuuuuuuuuuuuuuuuuugagacagagucuugcucugucacccagguuggagugaggugg	chr10:70339988-70340286(+)$1	298	85	149	128.6037
uuuuuucuuuaauuuuuuuuuuuugagacagugucucacugucacccagacuggagugcagugg	chr4:39724579-39724835(+)$1	256	80	144	105.0188
Guuuuuuuuuuuuuuuuuuuuugagacggagucuugcucugucacccaggcugcuggagugcag	chr1:28906709-28906926(-)$1	217	85	149	105.1132
uuuuuuuuuuuuuuuuuuuuuuuuuugagacagggucucuguugcccaggcuggagugcagugg	chr7:139048656-139048873(+)$1	217	67	131	105.2075
UACuuuuuuuuuuuuuuuuuuuaagacggagucucacucugucaccuaggagugagugcagugg	chr21:40674574-40674785(-)$1	211	83	147	113.2264
uuuuuauuuuuuuauuuuuuuugagacggagucuugcucuguugcccaggcaggagugcagugg	chr11:65180375-65180662(+)$1	287	89	153	125.5849
uuuuuuuuuuuuuuuuuuuuuugagacgaggucuuacuauguagcccaggcuggucuugaacuc	chr16:23927457-23927736(+)$1	279	84	148	97.9433
uuuuuuuuuuuuuuuuuuuuuugagacagagucuugcucugucacccaggcuggagugcagugg	chr15:41572623-41572896(+)$1	273	85	149	139.3584
uccuuuuuuuuuuuuuuuuuuuuugagacagggucuugcucuuacccaagcuggagugcagcgg	chr12:76471615-76471866(-)$1	251	82	146	94.7358
CUACuuuuuuuuuuuuuuuuaacagacagggucucacucuguugccuggacuggagagccgugg	chr16:89879668-89879921(-)$1	253	84	148	98.3207
GGuuuuauuauuauuuuuuuuugagauggggucucacucugucacccaggcuggagugcagugg	chr1:45220538-45220788(+)$1	250	84	148	115.5849

#otherMatches

#Struct PSSM
::::::::::::::::::::::ccc"""dddd[dddd!!bb!!ggggggg!!ddddqqqqqqqq	chr10:104209487-104209737(+)$1	250	87	151	90.3018
:::::::::::::::::::::ffffff"""==========cccnnnnnccc]==========66	chr4:166263423-166263637(+)$1	214	83	147	103.1320
:::::::::::::::::::dddd[hhhhhhhhlllhhhhhhhhddddffffff!!iiiiiiiii	chr14:103072872-103073178(+)$1	306	92	156	103.5094
::::::::::::ddddmmmmddddhhhhhhhhlllhhhhhhhh::GGGGGGGddddggggggg[	chr17:80425268-80425520(+)$1	252	91	155	122.7547
:::::::::ffffffnnnnnffffff:ffffff!!dddd####ggggggg[eeeeehhhhhhhh	chr2:242250422-242250635(-)$1	213	85	149	100.4905
ffff:::::::::::::::::gggggggddddllldddd333gggggggccc[dddd[ccc[dd	chr2:168784617-168784891(-)$1	274	160	224	100.8679
fffff^^^^^^^^^^^^^^^^^^ffffff:hhhhhhhhbb"""dddddddd[dddd[ggggggg	chr1:28834026-28834263(+)$1	237	84	148	118.3207
::::::::::::::::::::::::hhhhhhhhlllhhhhhhhh:::::DDDD{FFFFFFFFFFF	chr1:246343892-246344168(-)$1	276	85	149	106.6226
::::::::::::::::::::::::iiiiiiiiillliiiiiiiii::ffffff[dddd[a[ccc	chr7:104719895-104720143(+)$1	248	69	133	110.0188
>>>>eeeee]eeeee:::::::::hhhhhhhhlllhhhhhhhhEEEEEJJJJJJJJJJ::ffff	chr11:27516821-27517126(-)$1	305	85	149	127.6603
::::::::::::::::::::::::gggggggnnnnngggggggdddddddd[ddddccc!!bb[	chr4:39706437-39706666(+)$1	229	50	114	125.6792
KCCC::::::::::ddddmmmmdddd:ffffff!!ccc%%%%%%ffffff[bba!!gggggggb	chr21:23643104-23643382(+)$1	278	85	149	113.7924
cc]ggggggg::::::::::::eeeee[ccc!!eeeee[bb"""bb[dddd[bb!!ffffff[a	chr12:93780623-93780884(+)$1	261	82	146	103.2264
iiiii:::::::::::::::GGGGGGGDDDD{A::::::ddddnnnnnddddddddccc[cccb	chr3:43745441-43745693(+)$1	252	84	148	130.8679
:::::::::::::::::::::hhhhhhhh!!bbddddcccddddllldddd]ccc22dddd]bb	chr11:85772266-85772478(-)$1	212	84	148	127.0943
ddddddxxxxxxxxxxxxxxxdddd]ddddHHHHHHHH::::::FFFFFF:eeeeehhhhhhhh	chr7:138151118-138151376(+)$1	258	87	151	111.9056
22dddd22bb::::::::::::::cccdddd!!eeeee[bb!!ggggggg[eeeee%%%%%%ee	chr11:85749213-85749468(-)$1	255	84	148	102.7547
[dddd^^^^^^^^^^^^^^^^^^^dddd]eeeee::::::DDDD}DDDDiiiiiiiii[ccc[d	chr5:81572854-81573102(-)$1	248	81	145	120.6792
^^^^^^^^^^^^^^^^^^^^^ffffffBB}CCCCCC::::eeeee!!cccbbdddd[dddd[cc	chr7:91610832-91611099(+)$1	267	87	151	113.1320
^^^^^^^^^^^^^^^^^^^^^^dddd22ffffff22eeeeeccc"""dddd####hhhhhhhh[	chr22:19390466-19390730(-)$1	264	84	148	84.5471
c:::::::::::::::::::::bbbb[ffffff!!ccc[bb!!ggggggg[a[ccc!!eeeeeb	chr13:20283157-20283405(-)$1	248	85	149	119.1698
::::::::::::::::::::::FFFFFFMMMMA{CCC{DDDDKKEEEEEccc[ccc[bb[dddd	chr1:167936871-167937127(+)$1	256	85	149	109.6415
4444ccc]ggggggg::::HHHHHHHH:ddddtttttttttttdddd===========!!cccp	chr7:56147870-56148185(+)$1	315	84	148	128.6981
eee::::::::::::::::::fffffflllffffff::::cccnnnnncccGGGGGGGYYHHHH	chr4:32084802-32085067(+)$1	265	84	148	111.6226
g^^^^^^^^^^^^^^^^^^^^^^^ggggggg::::ffffffddddddddbboooooobb]dddd	chr11:28117574-28117825(-)$1	251	81	145	117.1886
ffffffffffvvvvvvvvvvvvvffffffgggggggaooooooa]ggggggg:dddd[ccc[dd	chr2:168784599-168784817(-)$1	218	86	150	100.8679
::::::::::::::::::::::::hhhhhhhhlllhhhhhhhhbb!!eeeee!!eeeeeppppp	chr10:21992862-21993129(+)$1	267	82	146	96.5283
:::::::ddddtttttttttttddddfffffflllffffff:::::GGGGGGG}GGGGGGG:EE	chr12:132481727-132481998(+)$1	271	84	148	107.5660
::::::::::::::bboooooobbhhhhhhhhlllhhhhhhhh:ffffff[a[ddddffffffb	chr5:39056580-39056870(-)$1	290	110	174	98.7924
uuuudddd666666iiiiiiiii:gggggggnnnnnggggggg::::dddd[ddddhhhhhhhh	chr15:66077295-66077568(-)$1	273	83	147	110.9622
cc::::::::::::::::::::::hhhhhhhhlllhhhhhhhh::::CCC{EEEEEgggggggb	chr4:60957-61248(+)$1	291	84	148	127.2830
=:::::::::::::::::::::::hhhhhhhhlllhhhhhhhhEEEEEccc[dddd[bb[ffff	chr7:140157331-140157604(-)$1	273	85	149	115.6792
::::::::::::::::::::::::gggggggnnnnnggggggg:::eeeee[ddddgggggggb	chr17:40732902-40733161(-)$1	259	83	147	132.2830
::::::::::::::::::::::::gggggggnnnnngggggggdddddddd[ddddccc!!bb[	chr4:39706404-39706637(+)$1	233	83	147	125.6792
fffff>>>>>>>>>>>>>ccc]bb22eeeee::eeeee[a[eeeee[dddd[ddddgggggggc	chr3:10137490-10137753(+)$1	263	71	135	128.4150
eeeee]==============::::eeeeellleeeee::::::::::HHHHHHHH}EEEEEGGG	chr22:22841642-22841893(-)$1	251	86	150	103.7924
CCC::::::::::::::::::bboooooobb::::dddd[a!!ggggggg!!ffffff[bb)))	chr11:34481911-34482170(+)$1	259	80	144	95.7735
E:::::::::::::::::::::ccc[ffffffbb$$$$$ccc[eeeee!!cccnnnnnccceee	chr4:56270124-56270384(+)$1	260	81	145	117.5660
ff:::::::::::::::::::bb[hhhhhhhhlllhhhhhhhh]bb:dddd[ddddhhhhhhhh	chr10:76987247-76987518(+)$1	271	88	152	128.7924
::::::::::::::::::::::::iiiiiiiiillliiiiiiiii::ffffff[dddd[a[ccc	chr7:104719880-104720095(+)$1	215	84	148	110.0188
3ccc]dddd>>>>>>>>>>>>bbggggggg::::bb[dddd!!dddddddd[eeeeeffffffb	chr12:120636043-120636263(-)$1	220	53	117	124.9245
^^^^^^^^^^^^^^^^^^^^^^eeeeedddd!!eeeee[bb!!dddd[dddd[dddddddd###	chr14:21735100-21735361(-)$1	261	85	149	90.2075
^^^^^^^^^^^^^^^^^^^^ddddhhhhhhhhlllhhhhhhhh::FFFFFF}HHHHHHHH::GG	chr10:70339988-70340286(+)$1	298	85	149	128.6037
::::::::::::::::::::::::::ggggggglllggggggg:::ccc"""bb[hhhhhhhhb	chr4:39724579-39724835(+)$1	256	80	144	105.0188
::::::::::::::::::IIIIIIIIIdddd!!eeeee[bb!!ggggggg!!bb[ddddccc[c	chr1:28906709-28906926(-)$1	217	85	149	105.1132
=22dddd]ccc22eeeee22ffffff]ddddffffff[bb"""ggggggg[eeeee[ffffffb	chr7:139048656-139048873(+)$1	217	67	131	105.2075
::::::::::::::::::::::::hhhhhhhhlllhhhhhhhh::::ccc"""ddddggggggg	chr21:40674574-40674785(-)$1	211	83	147	113.2264
::::::::::::::::::::JJJJJJJJJJJffffff[cccnnnnncccffffff:gggggggb	chr11:65180375-65180662(+)$1	287	89	153	125.5849
:::::::::::::::::::::fffffflllffffff::::::::::HHHHHHHH::::eeeeea	chr16:23927457-23927736(+)$1	279	84	148	97.9433
^^^^^^^^^^^^^^^^^^^dddd:hhhhhhhhlllhhhhhhhh::::ggggggg[bbggggggg	chr15:41572623-41572896(+)$1	273	85	149	139.3584
::::::::::::::::::::::eeeee[dddda!!eeeee"""eeeeebb!!dddd[bb[ffff	chr12:76471615-76471866(-)$1	251	82	146	94.7358
^^^^^^^^^ffffff]dddd333iiiiiiiii4444ccc==========]ffffff]bb]dddd	chr16:89879668-89879921(-)$1	253	84	148	98.3207
======:::::::::::::::dddd[eeeee!!ffffff$$$$$ffffff[eeeeeiiiiiiii	chr1:45220538-45220788(+)$1	250	84	148	115.5849

#DB
......................(((...((((.((((..((..(((((((..((((........	chr10:104209487-104209737(+)$1	1	87	151	90.3018
.....................((((((...(((((((((((((.....))).))))))))))..	chr4:166263423-166263637(+)$1	1	83	147	103.1320
...................((((.((((((((...))))))))))))((((((..(((((((((	chr14:103072872-103073178(+)$1	1	92	156	103.5094
............((((....))))((((((((...))))))))..)))))))(((((((((((.	chr17:80425268-80425520(+)$1	1	91	155	122.7547
.........((((((.....)))))).((((((..((((....(((((((.(((((((((((((	chr2:242250422-242250635(-)$1	1	85	149	100.4905
)))).................(((((((((((...))))...)))))))(((.((((.(((.((	chr2:168784617-168784891(-)$1	1	160	224	100.8679
(((((..................)))))).((((((((((...((((((((.((((.(((((((	chr1:28834026-28834263(+)$1	1	84	148	118.3207
........................((((((((...)))))))).....((((.(((((((((((	chr1:246343892-246344168(-)$1	1	85	149	106.6226
........................(((((((((...)))))))))..((((((.((((.(.(((	chr7:104719895-104720143(+)$1	1	69	133	110.0188
....))))).))))).........((((((((...)))))))))))))((((((((((..((((	chr11:27516821-27517126(-)$1	1	85	149	127.6603
........................(((((((.....)))))))((((((((.(((((((..((.	chr4:39706437-39706666(+)$1	1	50	114	125.6792
.(((..........((((....)))).((((((..(((......((((((.(((..((((((((	chr21:23643104-23643382(+)$1	1	85	149	113.7924
)).)))))))............(((((.(((..(((((.((...((.((((.((..((((((.(	chr12:93780623-93780884(+)$1	1	82	146	103.2264
)))))...............(((((((((((.(......((((.....))))(((((((.((((	chr3:43745441-43745693(+)$1	1	84	148	130.8679
.....................((((((((..(((((((((((((...)))).)))..)))).))	chr11:85772266-85772478(-)$1	1	84	148	127.0943
((((((...............)))).))))))))))))......((((((.(((((((((((((	chr7:138151118-138151376(+)$1	1	87	151	111.9056
..))))..))..............(((((((..(((((.((..(((((((.(((((......((	chr11:85749213-85749468(-)$1	1	84	148	102.7547
.((((...................)))).)))))......)))).))))(((((((((.(((.(	chr5:81572854-81573102(-)$1	1	81	145	120.6792
.....................)))))))).))))))....(((((..(((((((((.((((.((	chr7:91610832-91611099(+)$1	1	87	151	113.1320
......................))))..))))))..)))))(((...((((....((((((((.	chr22:19390466-19390730(-)$1	1	84	148	84.5471
).....................((((.((((((..(((.((..(((((((.(.(((..((((((	chr13:20283157-20283405(-)$1	1	85	149	119.1698
......................((((((....(.(((.((((..((((((((.(((.((.((((	chr1:167936871-167937127(+)$1	1	85	149	109.6415
....))).)))))))....((((((((.((((...........))))(((((((((((..(((.	chr7:56147870-56148185(+)$1	1	84	148	128.6981
)))..................((((((...))))))....(((.....))))))))))..))))	chr4:32084802-32085067(+)$1	1	84	148	111.6226
(.......................)))))))....((((((((((((((((......)).))))	chr11:28117574-28117825(-)$1	1	81	145	117.1886
))))((((((.............))))))((((((((......).))))))).((((.(((.((	chr2:168784599-168784817(-)$1	1	86	150	100.8679
........................((((((((...))))))))((..(((((..(((((.....	chr10:21992862-21993129(+)$1	1	82	146	96.5283
.......((((...........))))((((((...)))))).....))))))).))))))).((	chr12:132481727-132481998(+)$1	1	84	148	107.5660
..............((......))((((((((...)))))))).((((((.(.(((((((((((	chr5:39056580-39056870(-)$1	1	110	174	98.7924
....))))......))))))))).(((((((.....)))))))....((((.((((((((((((	chr15:66077295-66077568(-)$1	1	83	147	110.9622
))......................((((((((...))))))))....(((.(((((((((((((	chr4:60957-61248(+)$1	1	84	148	127.2830
).......................((((((((...))))))))((((((((.((((.((.((((	chr7:140157331-140157604(-)$1	1	85	149	115.6792
........................(((((((.....)))))))...(((((.((((((((((((	chr17:40732902-40733161(-)$1	1	83	147	132.2830
........................(((((((.....)))))))((((((((.(((((((..((.	chr4:39706404-39706637(+)$1	1	83	147	125.6792
))))).............))).))..)))))..(((((.(.(((((.((((.((((((((((((	chr3:10137490-10137753(+)$1	1	71	135	128.4150
))))).))))))))))))))....(((((...)))))..........)))))))).))))))))	chr22:22841642-22841893(-)$1	1	86	150	103.7924
(((..................((......))....((((.(..(((((((..((((((.((...	chr11:34481911-34482170(+)$1	1	80	144	95.7735
(.....................(((.((((((((.....(((.(((((..(((.....))))))	chr4:56270124-56270384(+)$1	1	81	145	117.5660
))...................((.((((((((...)))))))).)).((((.((((((((((((	chr10:76987247-76987518(+)$1	1	88	152	128.7924
........................(((((((((...)))))))))..((((((.((((.(.(((	chr7:104719880-104720095(+)$1	1	84	148	110.0188
.))).))))............)))))))))....((.((((..((((((((.((((((((((((	chr12:120636043-120636263(-)$1	1	53	117	124.9245
......................)))))((((..(((((.((..((((.((((.((((((((...	chr14:21735100-21735361(-)$1	1	85	149	90.2075
....................))))((((((((...))))))))..)))))).))))))))..((	chr10:70339988-70340286(+)$1	1	85	149	128.6037
..........................(((((((...)))))))...(((...((.(((((((((	chr4:39724579-39724835(+)$1	1	80	144	105.0188
..................)))))))))((((..(((((.((..(((((((..((.(((((((.(	chr1:28906709-28906926(-)$1	1	85	149	105.1132
)..)))).)))..)))))..)))))).))))((((((.((...(((((((.(((((.(((((((	chr7:139048656-139048873(+)$1	1	67	131	105.2075
........................((((((((...))))))))....(((...(((((((((((	chr21:40674574-40674785(-)$1	1	83	147	113.2264
....................(((((((((((((((((.(((.....))))))))).((((((((	chr11:65180375-65180662(+)$1	1	89	153	125.5849
.....................((((((...))))))..........))))))))....((((((	chr16:23927457-23927736(+)$1	1	84	148	97.9433
...................)))).((((((((...))))))))....(((((((.(((((((((	chr15:41572623-41572896(+)$1	1	85	149	139.3584
......................(((((.(((((..(((((...(((((((..((((.((.((((	chr12:76471615-76471866(-)$1	1	82	146	94.7358
.........)))))).))))...)))))))))....))))))))))))).)))))).)).))))	chr16:89879668-89879921(-)$1	1	84	148	98.3207
))))))...............((((.(((((..((((((.....((((((.(((((((((((((	chr1:45220538-45220788(+)$1	1	84	148	115.5849

#PSSM
u : 0.56	A : 0.09	C : 0.09	U : 0.07	c : 0.05	a : 0.03	g : 0.03	G : 0.03	
u : 0.66	C : 0.11	G : 0.09	c : 0.07	g : 0.01	A : 0.01	U : 0.01	
u : 0.75	A : 0.07	c : 0.07	C : 0.05	a : 0.03	
u : 0.88	C : 0.05	g : 0.01	U : 0.01	a : 0.01	
u : 0.90	C : 0.03	g : 0.01	c : 0.01	G : 0.01	
u : 0.88	U : 0.05	c : 0.03	a : 0.01	
u : 0.84	G : 0.05	a : 0.03	c : 0.03	g : 0.01	
u : 0.96	G : 0.01	c : 0.01	
u : 0.90	c : 0.03	a : 0.01	g : 0.01	A : 0.01	
u : 0.92	a : 0.03	g : 0.01	c : 0.01	
u : 0.94	g : 0.01	c : 0.01	a : 0.01	
u : 0.92	a : 0.03	c : 0.03	
u : 0.92	a : 0.05	g : 0.01	
u : 0.96	a : 0.03	
u : 0.98	a : 0.01	
u : 0.94	a : 0.03	c : 0.01	
u : 0.98	g : 0.01	
u : 0.96	g : 0.01	c : 0.01	
u : 0.92	a : 0.05	c : 0.01	
u : 0.92	g : 0.03	a : 0.01	c : 0.01	
u : 0.92	g : 0.03	c : 0.01	a : 0.01	
u : 0.79	g : 0.09	a : 0.05	c : 0.05	
g : 0.60	u : 0.32	c : 0.03	a : 0.03	
a : 0.73	u : 0.22	g : 0.03	
g : 0.94	u : 0.03	c : 0.01	
a : 0.90	g : 0.03	u : 0.03	c : 0.01	
c : 0.66	u : 0.16	g : 0.16	
a : 0.60	g : 0.35	u : 0.01	c : 0.01	
g : 0.75	c : 0.13	a : 0.07	u : 0.03	
a : 0.69	g : 0.22	c : 0.03	u : 0.03	
g : 0.92	a : 0.05	c : 0.01	
u : 0.88	c : 0.03	a : 0.03	g : 0.03	
c : 0.83	g : 0.15	u : 0.01	
u : 0.96	a : 0.01	g : 0.01	
c : 0.60	u : 0.32	g : 0.05	a : 0.01	
g : 0.47	a : 0.33	u : 0.15	c : 0.03	
c : 0.94	u : 0.05	
u : 0.86	a : 0.07	c : 0.03	g : 0.01	
c : 0.75	g : 0.09	u : 0.09	a : 0.05	
u : 0.98	g : 0.01	
g : 0.98	c : 0.01	
u : 0.96	c : 0.01	a : 0.01	
c : 0.50	u : 0.45	a : 0.03	
g : 0.56	a : 0.32	u : 0.07	c : 0.03	
c : 0.92	u : 0.07	
c : 0.98	u : 0.01	
c : 0.83	u : 0.15	a : 0.01	
a : 0.90	u : 0.05	g : 0.03	
g : 0.94	a : 0.03	u : 0.01	
g : 0.90	a : 0.07	c : 0.01	
c : 0.92	u : 0.03	g : 0.01	a : 0.01	
u : 0.88	c : 0.05	a : 0.03	g : 0.01	
g : 0.88	u : 0.05	a : 0.05	
g : 0.92	a : 0.03	u : 0.01	c : 0.01	
a : 0.86	u : 0.07	g : 0.03	c : 0.01	
g : 0.83	a : 0.09	c : 0.03	u : 0.03	
u : 0.86	g : 0.11	a : 0.01	
g : 0.86	u : 0.05	c : 0.03	a : 0.03	
c : 0.77	u : 0.07	g : 0.07	a : 0.07	
a : 0.71	g : 0.15	u : 0.07	c : 0.05	
g : 0.75	a : 0.15	c : 0.05	u : 0.03	
u : 0.79	c : 0.11	g : 0.09	
g : 0.81	u : 0.07	a : 0.07	c : 0.03	
g : 0.79	u : 0.09	c : 0.07	a : 0.03	

#score	5947.509433962275
#seq	53
#width	64
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_UTR_m1_run2.nuc.txt

#NT
GAUGCUU	chr17:7481292-7481499(+)$1	207	78	85	13.5735
GAUGAUG	chr6:31802993-31803196(+)$1	203	49	56	14.9705
gaugauu	chr8:33370954-33371160(+)$1	206	61	68	17.7647
AAUGAUU	chr15:25227038-25227282(+)$1	244	135	142	13.4264
GAUGACU	chr2:216232510-216232747(-)$1	237	23	30	13.5735
AAUGAUU	chr15:25227082-25227299(+)$1	217	91	98	13.4264
GCUGAUU	chr4:74279232-74279447(+)$1	215	51	58	13.6470
gaugaug	chr11:122929542-122929749(-)$1	207	53	60	14.9705
GCUGAUU	chr4:74279199-74279432(+)$1	233	84	91	13.6470
GAUGAUU	chr4:74280719-74280980(+)$1	261	203	210	17.7647
GAUGCUU	chr3:133472373-133472645(+)$1	272	110	117	13.5735
gaugauu	chr8:33370976-33371188(+)$1	212	39	46	17.7647
gaugaug	chr11:122929556-122929776(-)$1	220	80	87	14.9705
GAUGAUU	chr5:85916223-85916459(+)$1	236	28	35	17.7647
GAUGAUG	chr18:47017941-47018154(-)$1	213	59	66	14.9705
gaugagu	chr11:122929954-122930162(-)$1	208	39	46	13.7205
gaugauu	chr17:8076724-8076929(-)$1	205	79	86	17.7647
gaugauu	chr17:8076712-8076914(-)$1	202	64	71	17.7647
CAUGAUU	chr4:74272257-74272490(+)$1	233	8	15	13.4264
gaugauu	chr17:8076734-8076940(-)$1	206	90	97	17.7647
GUUGAUU	chr11:93464054-93464258(-)$1	204	111	118	13.5000
gaugagu	chr11:122929983-122930187(-)$1	204	64	71	13.7205
GGUGAUU	chr17:7481240-7481473(+)$1	233	38	45	13.5000
gaugaug	chr11:122929549-122929756(-)$1	207	60	67	14.9705
GAUGAUG	chr2:216230150-216230366(-)$1	216	83	90	14.9705
gaugauu	chr17:8076721-8076924(-)$1	203	74	81	17.7647
GAUGAUG	chr11:75111404-75111618(+)$1	214	42	49	14.9705
gaugauu	chr17:8076761-8076969(-)$1	208	119	126	17.7647
GAUGUUU	chr3:195789624-195789903(-)$1	279	244	251	13.5000
GAUGAUU	chr17:64224096-64224335(-)$1	239	35	42	17.7647
gaugauu	chr17:8076769-8076972(-)$1	203	122	129	17.7647
gaugauu	chr17:8076746-8076961(-)$1	215	111	118	17.7647
GAUGUUU	chr6:31508852-31509055(-)$1	203	107	114	13.5000
CAUGAUU	chr4:74272247-74272457(+)$1	210	18	25	13.4264
GAUGAUG	chr6:31802976-31803178(+)$1	202	66	73	14.9705
gaugauu	chr8:33370960-33371164(+)$1	204	55	62	17.7647
gaugagu	chr11:122929967-122930183(-)$1	216	60	67	13.7205
gaugauu	chr8:33370964-33371168(+)$1	204	51	58	17.7647
gaugauu	chr17:8076714-8076916(-)$1	202	66	73	17.7647
gaugagu	chr11:122929987-122930195(-)$1	208	72	79	13.7205
GGUGAUU	chr17:7481273-7481476(+)$1	203	5	12	13.5000
GAUGAUG	chr11:75111371-75111588(+)$1	217	75	82	14.9705
gaugauu	chr17:8076668-8076890(-)$1	222	40	47	17.7647
gaugauu	chr8:33370927-33371134(+)$1	207	88	95	17.7647
GAUGAUU	chr6:31804811-31805021(+)$1	210	47	54	17.7647
GAUGUUU	chr6:31508793-31509034(-)$1	241	86	93	13.5000
GAUGCUU	chr17:7481300-7481509(+)$1	209	70	77	13.5735
gaugaug	chr5:179132596-179132863(+)$1	267	158	165	14.9705
gaugauu	chr17:8076692-8076898(-)$1	206	48	55	17.7647
gaugagu	chr11:122929949-122930154(-)$1	205	31	38	13.7205
GAUGAUU	chr6:31804788-31805011(+)$1	223	70	77	17.7647
gaugauu	chr17:8076690-8076892(-)$1	202	42	49	17.7647
GAUGAUG	chr6:31802978-31803193(+)$1	215	64	71	14.9705
GAUGACU	chr2:216232626-216232842(-)$1	216	118	125	13.5735
GUUGAUU	chr4:74283154-74283398(+)$1	244	6	13	13.5000
GAUGAUU	chr6:31804762-31804988(+)$1	226	96	103	17.7647
GCUGAUU	chr17:27050645-27050853(+)$1	208	96	103	13.6470
GAUGAUG	chr2:216230166-216230390(-)$1	224	107	114	14.9705
GAUGAUG	chr11:75111425-75111677(+)$1	252	21	28	14.9705
GAUGACU	chr2:216232547-216232788(-)$1	241	64	71	13.5735
gaugauu	chr8:33370968-33371172(+)$1	204	47	54	17.7647
GCUGAUU	chr4:74279148-74279389(+)$1	241	135	142	13.6470
GAUGCUU	chr17:27050617-27050837(+)$1	220	17	24	13.5735
AAUGAUU	chr15:25227104-25227355(+)$1	251	69	76	13.4264
CAUGAUU	chr4:152024897-152025126(+)$1	229	61	68	13.4264
gaugauu	chr17:8076698-8076905(-)$1	207	55	62	17.7647
GAUGAUG	chr11:75111388-75111595(+)$1	207	58	65	14.9705

#otherMatches

#Struct PSSM
"""bb[b	chr18:47017965-47018198(-)$1	233	103	110	14.9705
dlllddd	chr17:7481292-7481499(+)$1	207	78	85	13.5735
^^^^^^^	chr6:31802993-31803196(+)$1	203	49	56	14.9705
=[cccqq	chr8:33370954-33371160(+)$1	206	61	68	17.7647
::::::e	chr15:25227038-25227282(+)$1	244	135	142	13.4264
cc[dddd	chr2:216232510-216232747(-)$1	237	23	30	13.5735
:::gggg	chr15:25227082-25227299(+)$1	217	91	98	13.4264
leeeee:	chr4:74279232-74279447(+)$1	215	51	58	13.6470
LLLJJJJ	chr11:122929542-122929749(-)$1	207	53	60	14.9705
cc[ccc[	chr4:74279199-74279432(+)$1	233	84	91	13.6470
ebb22==	chr4:74280719-74280980(+)$1	261	203	210	17.7647
///HHHH	chr3:133472373-133472645(+)$1	272	110	117	13.5735
=[cccqq	chr8:33370976-33371188(+)$1	212	39	46	17.7647
gg!!ddd	chr11:122929556-122929776(-)$1	220	80	87	14.9705
xxxxxxx	chr5:85916223-85916459(+)$1	236	28	35	17.7647
CCCKKBB	chr18:47017941-47018154(-)$1	213	59	66	14.9705
CCCeeee	chr11:122929954-122930162(-)$1	208	39	46	13.7205
dddCCC{	chr17:8076724-8076929(-)$1	205	79	86	17.7647
dddCCC{	chr17:8076712-8076914(-)$1	202	64	71	17.7647
DDIIIII	chr4:74272257-74272490(+)$1	233	8	15	13.4264
dddCCC{	chr17:8076734-8076940(-)$1	206	90	97	17.7647
fffmmmm	chr11:93464054-93464258(-)$1	204	111	118	13.5000
CCCeeee	chr11:122929983-122930187(-)$1	204	64	71	13.7205
e[bb$$$	chr17:7481240-7481473(+)$1	233	38	45	13.5000
LLLJJJJ	chr11:122929549-122929756(-)$1	207	60	67	14.9705
iiiiiii	chr2:216230150-216230366(-)$1	216	83	90	14.9705
MMMCCC{	chr17:8076721-8076924(-)$1	203	74	81	17.7647
eeee$$$	chr11:75111404-75111618(+)$1	214	42	49	14.9705
OOOCCC{	chr17:8076761-8076969(-)$1	208	119	126	17.7647
DDDDYYB	chr3:195789624-195789903(-)$1	279	244	251	13.5000
HHHHH::	chr17:64224096-64224335(-)$1	239	35	42	17.7647
DDDCCC{	chr17:8076769-8076972(-)$1	203	122	129	17.7647
dddCCC{	chr17:8076746-8076961(-)$1	215	111	118	17.7647
ATTTTTT	chr6:31508852-31509055(-)$1	203	107	114	13.5000
GGGG{CC	chr4:74272247-74272457(+)$1	210	18	25	13.4264
^^^^^^^	chr6:31802976-31803178(+)$1	202	66	73	14.9705
=[cccqq	chr8:33370960-33371164(+)$1	204	55	62	17.7647
CCCeeee	chr11:122929967-122930183(-)$1	216	60	67	13.7205
=[cccqq	chr8:33370964-33371168(+)$1	204	51	58	17.7647
MMMCCC{	chr17:8076714-8076916(-)$1	202	66	73	17.7647
CCCeeee	chr11:122929987-122930195(-)$1	208	72	79	13.7205
dddd[ff	chr17:7481273-7481476(+)$1	203	5	12	13.5000
eeee$$$	chr11:75111371-75111588(+)$1	217	75	82	14.9705
GGNNNNN	chr17:8076668-8076890(-)$1	222	40	47	17.7647
=[cccqq	chr8:33370927-33371134(+)$1	207	88	95	17.7647
bbdddd[	chr6:31804811-31805021(+)$1	210	47	54	17.7647
ATTTTTT	chr6:31508793-31509034(-)$1	241	86	93	13.5000
dlllddd	chr17:7481300-7481509(+)$1	209	70	77	13.5735
[bbmmmm	chr5:179132596-179132863(+)$1	267	158	165	14.9705
{CCC:::	chr17:8076692-8076898(-)$1	206	48	55	17.7647
CCCeeee	chr11:122929949-122930154(-)$1	205	31	38	13.7205
bbdddd[	chr6:31804788-31805011(+)$1	223	70	77	17.7647
{CCC:::	chr17:8076690-8076892(-)$1	202	42	49	17.7647
^^^^^^^	chr6:31802978-31803193(+)$1	215	64	71	14.9705
IIIIIII	chr2:216232626-216232842(-)$1	216	118	125	13.5735
:::::::	chr4:74283154-74283398(+)$1	244	6	13	13.5000
bbdddd[	chr6:31804762-31804988(+)$1	226	96	103	17.7647
DDDD::f	chr17:27050645-27050853(+)$1	208	96	103	13.6470
iiiiiii	chr2:216230166-216230390(-)$1	224	107	114	14.9705
eeee$$$	chr11:75111425-75111677(+)$1	252	21	28	14.9705
22eeeee	chr2:216232547-216232788(-)$1	241	64	71	13.5735
=[cccqq	chr8:33370968-33371172(+)$1	204	47	54	17.7647
leeeee:	chr4:74279148-74279389(+)$1	241	135	142	13.6470
AKKGGGG	chr17:27050617-27050837(+)$1	220	17	24	13.5735
EEEEEPP	chr15:25227104-25227355(+)$1	251	69	76	13.4264
dddnnnn	chr4:152024897-152025126(+)$1	229	61	68	13.4264
dddCCC{	chr17:8076698-8076905(-)$1	207	55	62	17.7647
eeee$$$	chr11:75111388-75111595(+)$1	207	58	65	14.9705

#DB
...((.(	chr18:47017965-47018198(-)$1	1	103	110	14.9705
(...)))	chr17:7481292-7481499(+)$1	1	78	85	13.5735
.......	chr6:31802993-31803196(+)$1	1	49	56	14.9705
(.(((..	chr8:33370954-33371160(+)$1	1	61	68	17.7647
......(	chr15:25227038-25227282(+)$1	1	135	142	13.4264
((.((((	chr2:216232510-216232747(-)$1	1	23	30	13.5735
...((((	chr15:25227082-25227299(+)$1	1	91	98	13.4264
.))))).	chr4:74279232-74279447(+)$1	1	51	58	13.6470
...((((	chr11:122929542-122929749(-)$1	1	53	60	14.9705
((.(((.	chr4:74279199-74279432(+)$1	1	84	91	13.6470
)))..))	chr4:74280719-74280980(+)$1	1	203	210	17.7647
...))))	chr3:133472373-133472645(+)$1	1	110	117	13.5735
(.(((..	chr8:33370976-33371188(+)$1	1	39	46	17.7647
((..(((	chr11:122929556-122929776(-)$1	1	80	87	14.9705
.......	chr5:85916223-85916459(+)$1	1	28	35	17.7647
(((..((	chr18:47017941-47018154(-)$1	1	59	66	14.9705
(((((((	chr11:122929954-122930162(-)$1	1	39	46	13.7205
)))(((.	chr17:8076724-8076929(-)$1	1	79	86	17.7647
)))(((.	chr17:8076712-8076914(-)$1	1	64	71	17.7647
(((((((	chr4:74272257-74272490(+)$1	1	8	15	13.4264
)))(((.	chr17:8076734-8076940(-)$1	1	90	97	17.7647
(((....	chr11:93464054-93464258(-)$1	1	111	118	13.5000
(((((((	chr11:122929983-122930187(-)$1	1	64	71	13.7205
(.((...	chr17:7481240-7481473(+)$1	1	38	45	13.5000
...((((	chr11:122929549-122929756(-)$1	1	60	67	14.9705
(((((((	chr2:216230150-216230366(-)$1	1	83	90	14.9705
...(((.	chr17:8076721-8076924(-)$1	1	74	81	17.7647
((((...	chr11:75111404-75111618(+)$1	1	42	49	14.9705
...(((.	chr17:8076761-8076969(-)$1	1	119	126	17.7647
))))..)	chr3:195789624-195789903(-)$1	1	244	251	13.5000
(((((..	chr17:64224096-64224335(-)$1	1	35	42	17.7647
)))(((.	chr17:8076769-8076972(-)$1	1	122	129	17.7647
)))(((.	chr17:8076746-8076961(-)$1	1	111	118	17.7647
(......	chr6:31508852-31509055(-)$1	1	107	114	13.5000
((((.((	chr4:74272247-74272457(+)$1	1	18	25	13.4264
.......	chr6:31802976-31803178(+)$1	1	66	73	14.9705
(.(((..	chr8:33370960-33371164(+)$1	1	55	62	17.7647
(((((((	chr11:122929967-122930183(-)$1	1	60	67	13.7205
(.(((..	chr8:33370964-33371168(+)$1	1	51	58	17.7647
...(((.	chr17:8076714-8076916(-)$1	1	66	73	17.7647
(((((((	chr11:122929987-122930195(-)$1	1	72	79	13.7205
((((.((	chr17:7481273-7481476(+)$1	1	5	12	13.5000
((((...	chr11:75111371-75111588(+)$1	1	75	82	14.9705
((.....	chr17:8076668-8076890(-)$1	1	40	47	17.7647
(.(((..	chr8:33370927-33371134(+)$1	1	88	95	17.7647
((((((.	chr6:31804811-31805021(+)$1	1	47	54	17.7647
(......	chr6:31508793-31509034(-)$1	1	86	93	13.5000
(...)))	chr17:7481300-7481509(+)$1	1	70	77	13.5735
.((....	chr5:179132596-179132863(+)$1	1	158	165	14.9705
.(((...	chr17:8076692-8076898(-)$1	1	48	55	17.7647
(((((((	chr11:122929949-122930154(-)$1	1	31	38	13.7205
((((((.	chr6:31804788-31805011(+)$1	1	70	77	17.7647
.(((...	chr17:8076690-8076892(-)$1	1	42	49	17.7647
.......	chr6:31802978-31803193(+)$1	1	64	71	14.9705
)))))))	chr2:216232626-216232842(-)$1	1	118	125	13.5735
.......	chr4:74283154-74283398(+)$1	1	6	13	13.5000
((((((.	chr6:31804762-31804988(+)$1	1	96	103	17.7647
((((..(	chr17:27050645-27050853(+)$1	1	96	103	13.6470
(((((((	chr2:216230166-216230390(-)$1	1	107	114	14.9705
((((...	chr11:75111425-75111677(+)$1	1	21	28	14.9705
..)))))	chr2:216232547-216232788(-)$1	1	64	71	13.5735
(.(((..	chr8:33370968-33371172(+)$1	1	47	54	17.7647
.))))).	chr4:74279148-74279389(+)$1	1	135	142	13.6470
(..((((	chr17:27050617-27050837(+)$1	1	17	24	13.5735
(((((..	chr15:25227104-25227355(+)$1	1	69	76	13.4264
(((....	chr4:152024897-152025126(+)$1	1	61	68	13.4264
)))(((.	chr17:8076698-8076905(-)$1	1	55	62	17.7647
((((...	chr11:75111388-75111595(+)$1	1	58	65	14.9705

#PSSM
G : 0.51	g : 0.39	A : 0.04	C : 0.04	
A : 0.48	a : 0.39	C : 0.05	U : 0.02	G : 0.02	
U : 0.60	u : 0.39	
G : 0.60	g : 0.39	
A : 0.50	a : 0.39	C : 0.05	U : 0.04	
U : 0.55	u : 0.32	g : 0.07	C : 0.04	
U : 0.44	u : 0.33	G : 0.16	g : 0.05	

#score	1044.1764705882354
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_transcript_m2_run2.nuc.txt

#NT
GGGCAGG	chr9:139260140-139260395(-)$1	255	81	88	18.7173
GGGCAGG	chr16:85669163-85669404(+)$1	241	105	112	18.7173
GGGCAGG	chr5:665459-665714(+)$1	255	28	35	18.7173
GGGCAGG	chr17:80054868-80055124(-)$1	256	132	139	18.7173
GGGCAGG	chrX:152937408-152937655(-)$1	247	88	95	18.7173
AGGCAGG	chr8:128910509-128910878(+)$1	369	240	247	15.1304
CGGCAGG	chr19:1035860-1036110(+)$1	250	156	163	14.8043
AGGCAGG	chr11:65819843-65820086(+)$1	243	232	239	15.1304
GGGCAGG	chr22:49993768-49994016(-)$1	248	118	125	18.7173
GGGAAGG	chr9:133760246-133760491(+)$1	245	152	159	15.7826
AGGCAGG	chr16:2814478-2814754(+)$1	276	228	235	15.1304
GGGCAGG	chr7:1063897-1064173(-)$1	276	197	204	18.7173
gggcagg	chr16:85677502-85677774(+)$1	272	149	156	18.7173
GGGCAGG	chr11:431994-432247(-)$1	253	125	132	18.7173
ggguagg	chr16:85680827-85681083(+)$1	256	136	143	15.1304
GGGCAGG	chr22:19752059-19752313(+)$1	254	172	179	18.7173
GGGCAGG	chr16:85669036-85669326(+)$1	290	232	239	18.7173
UGGCAGG	chr7:1883704-1884013(-)$1	309	89	96	15.1304
GGGCAGG	chr20:32441263-32441513(+)$1	250	174	181	18.7173
gggcagg	chr20:25836829-25837069(-)$1	240	130	137	18.7173
GGGGAGG	chr3:128210089-128210338(+)$1	249	218	225	15.4565
GGGCAGG	chr21:47831093-47831378(+)$1	285	246	253	18.7173
GGGCAGG	chr16:85647234-85647472(+)$1	238	68	75	18.7173
GGGCAGG	chr19:56181740-56181992(+)$1	252	213	220	18.7173
AGGCAGG	chr17:80807418-80807663(+)$1	245	225	232	15.1304
GGGAAGG	chr16:2104408-2104664(+)$1	256	92	99	15.7826
GGGAAGG	chr16:85680096-85680370(+)$1	274	125	132	15.7826
GGGCAGG	chr11:820084-820337(+)$1	253	62	69	18.7173
GGGCAGG	chr9:139836319-139836557(-)$1	238	114	121	18.7173
GGGCAGG	chr12:133138693-133138928(+)$1	235	48	55	18.7173
GGGAAGG	chr20:60899209-60899451(-)$1	242	58	65	15.7826
GGGAAGG	chr3:128211706-128211984(+)$1	278	8	15	15.7826
GGGGAGG	chr5:149776051-149776303(+)$1	252	128	135	15.4565
GGGAAGG	chr17:80802840-80803089(+)$1	249	48	55	15.7826
GGGCAGG	chr16:85679344-85679608(+)$1	264	6	13	18.7173
gggcagg	chr19:37500403-37500660(+)$1	257	127	134	18.7173
GGGAAGG	chr5:180650618-180650901(+)$1	283	35	42	15.7826
GGGGAGG	chr7:1064799-1065034(-)$1	235	201	208	15.4565
UGGCAGG	chr16:57200904-57201194(-)$1	290	165	172	15.1304
UGGCAGG	chr1:2161760-2162010(+)$1	250	14	21	15.1304
GGGCAGG	chr19:2229068-2229337(+)$1	269	26	33	18.7173
GGGCAGG	chr5:34191750-34192024(-)$1	274	23	30	18.7173
GGGCAGG	chr8:145650507-145650760(-)$1	253	96	103	18.7173
UGGCAGG	chr16:85668338-85668631(+)$1	293	104	111	15.1304
GGGGAGG	chr16:88993940-88994192(-)$1	252	61	68	15.4565

#otherMatches

#Struct PSSM
ooooocc	chr22:50030945-50031202(-)$1	257	53	60	18.7173
GGGGGGB	chr9:139260140-139260395(-)$1	255	81	88	18.7173
]hhhhhh	chr16:85669163-85669404(+)$1	241	105	112	18.7173
eeepppp	chr5:665459-665714(+)$1	255	28	35	18.7173
ddd[ddd	chr17:80054868-80055124(-)$1	256	132	139	18.7173
cc]dddd	chrX:152937408-152937655(-)$1	247	88	95	18.7173
llbb22b	chr8:128910509-128910878(+)$1	369	240	247	15.1304
llddddg	chr19:1035860-1036110(+)$1	250	156	163	14.8043
}CCC}FF	chr11:65819843-65820086(+)$1	243	232	239	15.1304
eebb::c	chr22:49993768-49994016(-)$1	248	118	125	18.7173
ccc!!dd	chr9:133760246-133760491(+)$1	245	152	159	15.7826
fffffmm	chr16:2814478-2814754(+)$1	276	228	235	15.1304
"a[eeee	chr7:1063897-1064173(-)$1	276	197	204	18.7173
ddggggg	chr16:85677502-85677774(+)$1	272	149	156	18.7173
:::eeee	chr11:431994-432247(-)$1	253	125	132	18.7173
eeee!!c	chr16:85680827-85681083(+)$1	256	136	143	15.1304
HHHH}AB	chr22:19752059-19752313(+)$1	254	172	179	18.7173
]hhhhhh	chr16:85669036-85669326(+)$1	290	232	239	18.7173
DDDDDDD	chr7:1883704-1884013(-)$1	309	89	96	15.1304
hh]bb]d	chr20:32441263-32441513(+)$1	250	174	181	18.7173
hheeeee	chr20:25836829-25837069(-)$1	240	130	137	18.7173
3ffffff	chr3:128210089-128210338(+)$1	249	218	225	15.4565
E}BBHHH	chr21:47831093-47831378(+)$1	285	246	253	18.7173
dddd:::	chr16:85647234-85647472(+)$1	238	68	75	18.7173
cchhhhh	chr19:56181740-56181992(+)$1	252	213	220	18.7173
dd[dddd	chr17:80807418-80807663(+)$1	245	225	232	15.1304
]a]dddd	chr16:2104408-2104664(+)$1	256	92	99	15.7826
llbb]a]	chr16:85680096-85680370(+)$1	274	125	132	15.7826
iiiiiii	chr11:820084-820337(+)$1	253	62	69	18.7173
ggggggd	chr9:139836319-139836557(-)$1	238	114	121	18.7173
EEEEKKF	chr12:133138693-133138928(+)$1	235	48	55	18.7173
iii:::G	chr20:60899209-60899451(-)$1	242	58	65	15.7826
:::::::	chr3:128211706-128211984(+)$1	278	8	15	15.7826
ddddlll	chr5:149776051-149776303(+)$1	252	128	135	15.4565
gggggg]	chr17:80802840-80803089(+)$1	249	48	55	15.7826
ddd[ggg	chr16:85679344-85679608(+)$1	264	6	13	18.7173
ccddddm	chr19:37500403-37500660(+)$1	257	127	134	18.7173
]a:::::	chr5:180650618-180650901(+)$1	283	35	42	15.7826
EEEEEdd	chr7:1064799-1065034(-)$1	235	201	208	15.4565
ffff###	chr16:57200904-57201194(-)$1	290	165	172	15.1304
C{EEEEE	chr1:2161760-2162010(+)$1	250	14	21	15.1304
fffff[c	chr19:2229068-2229337(+)$1	269	26	33	18.7173
dGGGGGG	chr5:34191750-34192024(-)$1	274	23	30	18.7173
JJJJJJJ	chr8:145650507-145650760(-)$1	253	96	103	18.7173
a]eeeee	chr16:85668338-85668631(+)$1	293	104	111	15.1304
ffff"""	chr16:88993940-88994192(-)$1	252	61	68	15.4565

#DB
.....))	chr22:50030945-50031202(-)$1	1	53	60	18.7173
)))))))	chr9:139260140-139260395(-)$1	1	81	88	18.7173
.))))))	chr16:85669163-85669404(+)$1	1	105	112	18.7173
(((....	chr5:665459-665714(+)$1	1	28	35	18.7173
(((.(((	chr17:80054868-80055124(-)$1	1	132	139	18.7173
)).))))	chrX:152937408-152937655(-)$1	1	88	95	18.7173
..))..)	chr8:128910509-128910878(+)$1	1	240	247	15.1304
..))))(	chr19:1035860-1036110(+)$1	1	156	163	14.8043
.))).))	chr11:65819843-65820086(+)$1	1	232	239	15.1304
))))..(	chr22:49993768-49994016(-)$1	1	118	125	18.7173
(((..((	chr9:133760246-133760491(+)$1	1	152	159	15.7826
(((((..	chr16:2814478-2814754(+)$1	1	228	235	15.1304
.(.((((	chr7:1063897-1064173(-)$1	1	197	204	18.7173
(((((((	chr16:85677502-85677774(+)$1	1	149	156	18.7173
...((((	chr11:431994-432247(-)$1	1	125	132	18.7173
((((..(	chr16:85680827-85681083(+)$1	1	136	143	15.1304
)))).))	chr22:19752059-19752313(+)$1	1	172	179	18.7173
.))))))	chr16:85669036-85669326(+)$1	1	232	239	18.7173
)))))))	chr7:1883704-1884013(-)$1	1	89	96	15.1304
)).)).)	chr20:32441263-32441513(+)$1	1	174	181	18.7173
)))))))	chr20:25836829-25837069(-)$1	1	130	137	18.7173
.))))))	chr3:128210089-128210338(+)$1	1	218	225	15.4565
).)))))	chr21:47831093-47831378(+)$1	1	246	253	18.7173
))))...	chr16:85647234-85647472(+)$1	1	68	75	18.7173
)))))))	chr19:56181740-56181992(+)$1	1	213	220	18.7173
((.((((	chr17:80807418-80807663(+)$1	1	225	232	15.1304
.).))))	chr16:2104408-2104664(+)$1	1	92	99	15.7826
..)).).	chr16:85680096-85680370(+)$1	1	125	132	15.7826
)))))))	chr11:820084-820337(+)$1	1	62	69	18.7173
))))))(	chr9:139836319-139836557(-)$1	1	114	121	18.7173
((((..(	chr12:133138693-133138928(+)$1	1	48	55	18.7173
)))...(	chr20:60899209-60899451(-)$1	1	58	65	15.7826
.......	chr3:128211706-128211984(+)$1	1	8	15	15.7826
((((...	chr5:149776051-149776303(+)$1	1	128	135	15.4565
)))))).	chr17:80802840-80803089(+)$1	1	48	55	15.7826
(((.(((	chr16:85679344-85679608(+)$1	1	6	13	18.7173
((((((.	chr19:37500403-37500660(+)$1	1	127	134	18.7173
.).....	chr5:180650618-180650901(+)$1	1	35	42	15.7826
)))))((	chr7:1064799-1065034(-)$1	1	201	208	15.4565
((((...	chr16:57200904-57201194(-)$1	1	165	172	15.1304
(.(((((	chr1:2161760-2162010(+)$1	1	14	21	15.1304
(((((.(	chr19:2229068-2229337(+)$1	1	26	33	18.7173
)((((((	chr5:34191750-34192024(-)$1	1	23	30	18.7173
(((((((	chr8:145650507-145650760(-)$1	1	96	103	18.7173
).)))))	chr16:85668338-85668631(+)$1	1	104	111	15.1304
((((...	chr16:88993940-88994192(-)$1	1	61	68	15.4565

#PSSM
G : 0.71	A : 0.08	g : 0.08	U : 0.08	C : 0.02	
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	
C : 0.67	A : 0.15	G : 0.08	c : 0.06	u : 0.02	
A : 0.91	a : 0.08	
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	

#score	791.2173913043466
#seq	46
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_UTR_m2_run1.nuc.txt

#NT
auauauguauau	chr20:4681905-4682181(+)$1	276	1	13	15.9000
CUGUAGAGAUAU	chr2:36776059-36776311(+)$1	252	45	57	13.1000
AUUUAUAAAGAU	chr16:2569993-2570292(+)$1	299	43	55	17.8000
CUGUUUAAAUAA	chr1:55315272-55315576(-)$1	304	246	258	13.9000
AUAUGUAAAUAU	chr5:133291337-133291585(-)$1	248	80	92	19.2000
AUGUAUGAAGUU	chr2:10923910-10924136(-)$1	226	155	167	12.9000
AUUUAUCAAUUU	chr2:216225695-216225937(-)$1	242	174	186	14.3000
AAGAAUAAAAAU	chr4:166419235-166419535(+)$1	300	83	95	11.4000
GUGUAUUAAUGU	chr6:64291104-64291328(+)$1	224	101	113	13.9000
AUUUUUAAGUAU	chr21:27253443-27253705(-)$1	262	203	215	14.1000
auauaucuauau	chr20:48808770-48809032(+)$1	262	1	13	15.7000
AUAUAUUAAUAU	chr10:7791288-7791556(+)$1	268	32	44	19.2000
AUAUGUAAAUAU	chr5:133291223-133291537(-)$1	314	32	44	19.2000
uuauauaaauau	chr2:20648242-20648505(+)$1	263	61	73	19.6000
UUUUUUAAAUAU	chr13:113977480-113977714(+)$1	234	48	60	16.2000
UGUUAUAAAAAU	chr10:73576920-73577161(-)$1	241	56	68	11.4000
AUGUAGCAAUAA	chr2:43449904-43450201(-)$1	297	120	132	12.2000
CUAUAUAAAUAU	chr12:49414160-49414436(-)$1	276	219	231	19.3000
AGGUUGAAAUAU	chr3:145787294-145787570(-)$1	276	206	218	12.7000
augugugaauau	chr17:56167575-56167830(+)$1	255	7	19	17.6000
AGGUAAAAAUAU	chr4:166418913-166419160(+)$1	247	4	16	15.4000
AUuuauuaauau	chrX:131506498-131506847(-)$1	349	304	316	18.6000
GUGUAUUAAUGU	chr6:64291171-64291424(+)$1	253	34	46	13.9000
UUGUAAAGAUAU	chr7:103112483-103112745(-)$1	262	60	72	13.3000
UUAUAUUAAGAU	chr17:53470261-53470535(-)$1	274	45	57	13.2000
auguauaaauau	chr19:54379490-54379751(+)$1	261	47	59	23.4000
CUGUAUUUAUAU	chr19:18499791-18500045(+)$1	254	63	75	14.8000
UUGUCUAAAGAU	chr7:103112445-103112647(-)$1	202	116	128	14.0000
AUAUAUACAUAU	chr22:38203104-38203326(+)$1	222	118	130	18.5000
AUGCUUAAAUAA	chr7:103112166-103112450(-)$1	284	184	196	12.3000
UGUUGUAAAUAU	chr2:97525465-97525707(-)$1	242	178	190	12.3000
auguauaaauau	chr19:54379351-54379608(+)$1	257	186	198	23.4000
AUAUAUUAAUAU	chr10:7791241-7791488(+)$1	247	79	91	19.2000
AUGUGUAAUUGU	chr20:35869729-35870041(+)$1	312	253	265	12.2000
auauauauauau	chr12:108962907-108963161(+)$1	254	194	206	18.9000
UAGUGUAAAUAU	chr12:46752006-46752278(-)$1	272	171	183	14.2000
AUUUGUAAAUAU	chr11:64894800-64895099(-)$1	299	278	290	18.6000
auguauauauau	chr7:45932720-45932952(+)$1	232	60	72	20.3000
AUGGUUAAAUAU	chr2:106709704-106709987(-)$1	283	179	191	16.2000
AAGUAUAAAAAA	chr6:119500512-119500759(-)$1	247	193	205	11.7000
AUAUAUACAUAU	chr22:38203127-38203377(+)$1	250	95	107	18.5000
GUAUAUAAAUAU	chr8:126034278-126034511(+)$1	233	61	73	19.3000
AUGUACAUAUAU	chr12:46752272-46752596(-)$1	324	73	85	16.2000
AUGUAUGAAGUU	chr2:10923936-10924157(-)$1	221	176	188	12.9000
AUGUACAAAAAU	chr5:137088284-137088555(-)$1	271	194	206	15.6000
AUAAAUGAAUAU	chr2:20192567-20192908(-)$1	341	7	19	14.7000
CUGUUUAUAUAU	chr17:66526556-66526803(+)$1	247	150	162	14.8000
AUGUAUAACUUU	chr8:117858093-117858388(-)$1	295	176	188	15.0000
GUGCAUACAUAU	chr16:18802939-18803249(-)$1	310	152	164	12.9000

#otherMatches

#Struct PSSM
ccrrrrrrrrrc	chr1:31404286-31404548(-)$1	262	74	86	12.3000
::::::EEEEE{	chr20:4681905-4682181(+)$1	276	1	13	15.9000
ee]ggggggg]e	chr2:36776059-36776311(+)$1	252	45	57	13.1000
eeeeeffffff:	chr16:2569993-2570292(+)$1	299	43	55	17.8000
EE}DDDD/////	chr1:55315272-55315576(-)$1	304	246	258	13.9000
ddddmmmmdddd	chr5:133291337-133291585(-)$1	248	80	92	19.2000
:::eeeee[bbq	chr2:10923910-10924136(-)$1	226	155	167	12.9000
[dddd[hhhhhh	chr2:216225695-216225937(-)$1	242	174	186	14.3000
ppppdddd5555	chr4:166419235-166419535(+)$1	300	83	95	11.4000
dddd333fffff	chr6:64291104-64291328(+)$1	224	101	113	13.9000
::::::gggggg	chr21:27253443-27253705(-)$1	262	203	215	14.1000
:::EEEEE::::	chr20:48808770-48809032(+)$1	262	1	13	15.7000
eeeemmmmeeee	chr10:7791288-7791556(+)$1	268	32	44	19.2000
hhhhhhh!!eee	chr5:133291223-133291537(-)$1	314	32	44	19.2000
eecccmmmmccc	chr2:20648242-20648505(+)$1	263	61	73	19.6000
fff!!dddd[ii	chr13:113977480-113977714(+)$1	234	48	60	16.2000
hhhhhhhh####	chr10:73576920-73577161(-)$1	241	56	68	11.4000
c]dddd]ccc33	chr2:43449904-43450201(-)$1	297	120	132	12.2000
lffffff:DDDD	chr12:49414160-49414436(-)$1	276	219	231	19.3000
cca]iiiiiiii	chr3:145787294-145787570(-)$1	276	206	218	12.7000
hhhhh"""gggg	chr17:56167575-56167830(+)$1	255	7	19	17.6000
::::::::hhhh	chr4:166418913-166419160(+)$1	247	4	16	15.4000
::==========	chrX:131506498-131506847(-)$1	349	304	316	18.6000
EEEEE:::::GG	chr6:64291171-64291424(+)$1	253	34	46	13.9000
eeeee:eeeeel	chr7:103112483-103112745(-)$1	262	60	72	13.3000
ffflllffffff	chr17:53470261-53470535(-)$1	274	45	57	13.2000
ggggggg]hhhh	chr19:54379490-54379751(+)$1	261	47	59	23.4000
bbtttttttttt	chr19:18499791-18500045(+)$1	254	63	75	14.8000
eeeee"""dddd	chr7:103112445-103112647(-)$1	202	116	128	14.0000
==========22	chr22:38203104-38203326(+)$1	222	118	130	18.5000
::::dddd[ggg	chr7:103112166-103112450(-)$1	284	184	196	12.3000
====eeeee[bb	chr2:97525465-97525707(-)$1	242	178	190	12.3000
ggggggg]hhhh	chr19:54379351-54379608(+)$1	257	186	198	23.4000
eeooooooeeee	chr10:7791241-7791488(+)$1	247	79	91	19.2000
5bb]dddd22cc	chr20:35869729-35870041(+)$1	312	253	265	12.2000
ffffmmmmffff	chr12:108962907-108963161(+)$1	254	194	206	18.9000
ddd]bb]eeeee	chr12:46752006-46752278(-)$1	272	171	183	14.2000
gggggggppppp	chr11:64894800-64895099(-)$1	299	278	290	18.6000
ooo=========	chr7:45932720-45932952(+)$1	232	60	72	20.3000
2bbffffffqqq	chr2:106709704-106709987(-)$1	283	179	191	16.2000
^^^^^^^^^^^^	chr6:119500512-119500759(-)$1	247	193	205	11.7000
==========::	chr22:38203127-38203377(+)$1	250	95	107	18.5000
hh"""eeeee[g	chr8:126034278-126034511(+)$1	233	61	73	19.3000
ii[dddd[dddd	chr12:46752272-46752596(-)$1	324	73	85	16.2000
eeeeffffff::	chr2:10923936-10924157(-)$1	221	176	188	12.9000
hhhhhh"""bb[	chr5:137088284-137088555(-)$1	271	194	206	15.6000
::::::::::DD	chr2:20192567-20192908(-)$1	341	7	19	14.7000
IIIIIIII::ii	chr17:66526556-66526803(+)$1	247	150	162	14.8000
:::=========	chr8:117858093-117858388(-)$1	295	176	188	15.0000
:::BB}FFFFFF	chr16:18802939-18803249(-)$1	310	152	164	12.9000

#DB
((.........)	chr1:31404286-31404548(-)$1	1	74	86	12.3000
......(((((.	chr20:4681905-4682181(+)$1	1	1	13	15.9000
)).))))))).)	chr2:36776059-36776311(+)$1	1	45	57	13.1000
))))))))))).	chr16:2569993-2570292(+)$1	1	43	55	17.8000
)).)))).....	chr1:55315272-55315576(-)$1	1	246	258	13.9000
((((....))))	chr5:133291337-133291585(-)$1	1	80	92	19.2000
...(((((.((.	chr2:10923910-10924136(-)$1	1	155	167	12.9000
.((((.((((((	chr2:216225695-216225937(-)$1	1	174	186	14.3000
....))))....	chr4:166419235-166419535(+)$1	1	83	95	11.4000
))))...)))))	chr6:64291104-64291328(+)$1	1	101	113	13.9000
......((((((	chr21:27253443-27253705(-)$1	1	203	215	14.1000
...(((((....	chr20:48808770-48809032(+)$1	1	1	13	15.7000
((((....))))	chr10:7791288-7791556(+)$1	1	32	44	19.2000
(((((((..(((	chr5:133291223-133291537(-)$1	1	32	44	19.2000
(((((....)))	chr2:20648242-20648505(+)$1	1	61	73	19.6000
(((..((((.((	chr13:113977480-113977714(+)$1	1	48	60	16.2000
((((((((....	chr10:73576920-73577161(-)$1	1	56	68	11.4000
).)))).)))..	chr2:43449904-43450201(-)$1	1	120	132	12.2000
.)))))).))))	chr12:49414160-49414436(-)$1	1	219	231	19.3000
))).))))))))	chr3:145787294-145787570(-)$1	1	206	218	12.7000
(((((...((((	chr17:56167575-56167830(+)$1	1	7	19	17.6000
........((((	chr4:166418913-166419160(+)$1	1	4	16	15.4000
..((((((((((	chrX:131506498-131506847(-)$1	1	304	316	18.6000
(((((.....((	chr6:64291171-64291424(+)$1	1	34	46	13.9000
))))).(((((.	chr7:103112483-103112745(-)$1	1	60	72	13.3000
(((...))))))	chr17:53470261-53470535(-)$1	1	45	57	13.2000
))))))).))))	chr19:54379490-54379751(+)$1	1	47	59	23.4000
((..........	chr19:18499791-18500045(+)$1	1	63	75	14.8000
(((((...((((	chr7:103112445-103112647(-)$1	1	116	128	14.0000
))))))))))..	chr22:38203104-38203326(+)$1	1	118	130	18.5000
....((((.(((	chr7:103112166-103112450(-)$1	1	184	196	12.3000
(((((((((.((	chr2:97525465-97525707(-)$1	1	178	190	12.3000
))))))).))))	chr19:54379351-54379608(+)$1	1	186	198	23.4000
((......))))	chr10:7791241-7791488(+)$1	1	79	91	19.2000
.)).))))..))	chr20:35869729-35870041(+)$1	1	253	265	12.2000
((((....))))	chr12:108962907-108963161(+)$1	1	194	206	18.9000
))).)).)))))	chr12:46752006-46752278(-)$1	1	171	183	14.2000
(((((((.....	chr11:64894800-64895099(-)$1	1	278	290	18.6000
...)))))))))	chr7:45932720-45932952(+)$1	1	60	72	20.3000
.))((((((...	chr2:106709704-106709987(-)$1	1	179	191	16.2000
............	chr6:119500512-119500759(-)$1	1	193	205	11.7000
))))))))))..	chr22:38203127-38203377(+)$1	1	95	107	18.5000
((...(((((.(	chr8:126034278-126034511(+)$1	1	61	73	19.3000
((.((((.((((	chr12:46752272-46752596(-)$1	1	73	85	16.2000
))))))))))..	chr2:10923936-10924157(-)$1	1	176	188	12.9000
((((((...((.	chr5:137088284-137088555(-)$1	1	194	206	15.6000
..........((	chr2:20192567-20192908(-)$1	1	7	19	14.7000
((((((((..((	chr17:66526556-66526803(+)$1	1	150	162	14.8000
...(((((((((	chr8:117858093-117858388(-)$1	1	176	188	15.0000
...)).))))))	chr16:18802939-18803249(-)$1	1	152	164	12.9000

#PSSM
A : 0.50	a : 0.14	U : 0.14	G : 0.10	C : 0.10	u : 0.02	
U : 0.70	u : 0.16	G : 0.08	A : 0.06	
G : 0.48	A : 0.19	U : 0.14	a : 0.08	g : 0.08	u : 0.02	
U : 0.72	u : 0.18	A : 0.04	C : 0.04	G : 0.02	
A : 0.54	a : 0.16	U : 0.14	G : 0.12	g : 0.02	C : 0.02	
U : 0.68	u : 0.18	G : 0.06	A : 0.04	C : 0.04	
A : 0.60	U : 0.12	a : 0.10	G : 0.06	g : 0.04	C : 0.04	c : 0.02	u : 0.02	
A : 0.66	a : 0.10	u : 0.08	U : 0.06	C : 0.06	G : 0.04	
A : 0.74	a : 0.18	U : 0.04	G : 0.02	C : 0.02	
U : 0.64	u : 0.18	G : 0.10	A : 0.08	
A : 0.68	a : 0.18	U : 0.08	G : 0.06	
U : 0.72	u : 0.18	A : 0.10	

#score	786.2000000000006
#seq	50
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_CDS_m3_run1.nuc.txt

#NT
GUGA	chr7:75615490-75615767(+)$1	277	69	73	11.9999
GUGA	chr19:45563709-45563935(+)$1	226	16	20	11.9999
GUGA	chr14:64921483-64921778(+)$1	295	194	198	11.9999
GUGA	chr3:52473977-52474215(-)$1	238	2	6	11.9999
GUGA	chr9:139886926-139887202(+)$1	276	88	92	11.9999
GUGA	chr1:89279305-89279572(+)$1	267	111	115	11.9999
GUGA	chr20:30136848-30137149(+)$1	301	69	73	11.9999
GUGA	chr7:72721370-72721638(-)$1	268	10	14	11.9999
GUGA	chr11:72407541-72407819(-)$1	278	226	230	11.9999
GUGA	chr12:57492547-57492803(-)$1	256	6	10	11.9999
GUGA	chr1:981385-981655(+)$1	270	83	87	11.9999
GUGA	chr18:47812400-47812651(-)$1	251	99	103	11.9999
GUGA	chr14:74761681-74761988(-)$1	307	35	39	11.9999
GUGA	chr3:128890272-128890528(-)$1	256	195	199	11.9999
GUGA	chr9:107554075-107554333(-)$1	258	9	13	11.9999
GUGA	chr6:31601508-31601808(+)$1	300	156	160	11.9999
guga	chr16:22339692-22339976(+)$1	284	7	11	11.9999
GUGA	chr3:49161939-49162192(-)$1	253	59	63	11.9999
GUGA	chr14:24656876-24657124(-)$1	248	129	133	11.9999
GUGA	chr8:145001402-145001658(-)$1	256	239	243	11.9999
GUGA	chr6:24290991-24291300(-)$1	309	98	102	11.9999
guga	chr7:100850878-100851182(-)$1	304	25	29	11.9999
GUGA	chr14:105916453-105916731(+)$1	278	208	212	11.9999
GUGA	chr4:75023922-75024240(+)$1	318	71	75	11.9999
guga	chr3:53213691-53213981(+)$1	290	199	203	11.9999
GUGA	chr16:28847414-28847667(+)$1	253	29	33	11.9999
GUGA	chr5:141009204-141009496(-)$1	292	70	74	11.9999
GUGA	chr7:100275228-100275479(+)$1	251	55	59	11.9999
GUGA	chr20:3781226-3781495(+)$1	269	163	167	11.9999
GUGA	chr3:48462021-48462293(-)$1	272	37	41	11.9999
GUGA	chr22:22049060-22049345(+)$1	285	46	50	11.9999
GUGA	chr19:39924122-39924380(-)$1	258	76	80	11.9999
GUGA	chr8:145140016-145140302(+)$1	286	25	29	11.9999
GUGA	chr5:1321595-1321943(-)$1	348	194	198	11.9999
GUGA	chr11:118899771-118900033(-)$1	262	102	106	11.9999
GUGA	chr9:116270696-116270956(+)$1	260	164	168	11.9999
GUGA	chr17:17716456-17716720(-)$1	264	39	43	11.9999
GUGA	chr5:138629682-138629974(+)$1	292	35	39	11.9999
GUGA	chr17:33463062-33463382(-)$1	320	2	6	11.9999
GUGA	chr11:72408423-72408663(-)$1	240	21	25	11.9999
GUGA	chr6:33169376-33169638(+)$1	262	57	61	11.9999
GUGA	chr2:241513017-241513329(+)$1	312	26	30	11.9999
GUGA	chr16:67693147-67693390(-)$1	243	113	117	11.9999
GUGA	chr2:219143800-219144112(-)$1	312	7	11	11.9999
GUGA	chr16:67979038-67979300(-)$1	262	29	33	11.9999
GUGA	chr19:46026991-46027250(+)$1	259	144	148	11.9999
GUGA	chr1:40777658-40777913(-)$1	255	157	161	11.9999
GUGA	chr8:145620270-145620509(-)$1	239	197	201	11.9999
GUGA	chr17:43011871-43012152(-)$1	281	40	44	11.9999
GUGA	chr11:47269956-47270223(-)$1	267	188	192	11.9999
GUGA	chr17:79662134-79662380(+)$1	246	114	118	11.9999
GUGA	chr7:73021239-73021531(-)$1	292	66	70	11.9999
GUGA	chr21:47976854-47977133(+)$1	279	46	50	11.9999
GUGA	chr6:31937124-31937429(+)$1	305	73	77	11.9999
GUGA	chr16:66839569-66839863(-)$1	294	49	53	11.9999
GUGA	chr3:128628978-128629270(+)$1	292	14	18	11.9999
GUGA	chr7:2414122-2414368(+)$1	246	151	155	11.9999
GUGA	chr6:33164003-33164256(-)$1	253	46	50	11.9999
GUGA	chr14:24108973-24109186(+)$1	213	111	115	11.9999
GUGA	chr16:88785772-88786087(-)$1	315	289	293	11.9999
GUGA	chr9:136661528-136661795(-)$1	267	245	249	11.9999
GUGA	chr17:80045686-80045931(-)$1	245	95	99	11.9999
GUGA	chr20:60885720-60885989(-)$1	269	32	36	11.9999
GUGA	chr6:43596564-43596830(-)$1	266	117	121	11.9999
GUGA	chr17:79650981-79651237(+)$1	256	4	8	11.9999
GUGA	chr19:10218481-10218773(+)$1	292	49	53	11.9999
GUGA	chr20:39795158-39795430(+)$1	272	77	81	11.9999
GUGA	chr11:63992889-63993144(-)$1	255	219	223	11.9999
GUGA	chr19:50365764-50366009(-)$1	245	215	219	11.9999
GUGA	chr19:11512704-11512994(-)$1	290	104	108	11.9999
GUGA	chr16:1370544-1370796(+)$1	252	232	236	11.9999
GUGA	chr17:40266154-40266400(-)$1	246	25	29	11.9999
GUGA	chr22:50721773-50722015(-)$1	242	76	80	11.9999
GUGA	chr3:38413970-38414270(+)$1	300	257	261	11.9999

#otherMatches

#Struct PSSM
c:::	chr6:37138567-37138862(+)$1	295	88	92	11.9999
EECC	chr7:75615490-75615767(+)$1	277	69	73	11.9999
llcc	chr19:45563709-45563935(+)$1	226	16	20	11.9999
gggg	chr14:64921483-64921778(+)$1	295	194	198	11.9999
B{BB	chr3:52473977-52474215(-)$1	238	2	6	11.9999
nnnn	chr9:139886926-139887202(+)$1	276	88	92	11.9999
hhhh	chr1:89279305-89279572(+)$1	267	111	115	11.9999
JJ::	chr20:30136848-30137149(+)$1	301	69	73	11.9999
VVVV	chr7:72721370-72721638(-)$1	268	10	14	11.9999
====	chr11:72407541-72407819(-)$1	278	226	230	11.9999
DDDD	chr12:57492547-57492803(-)$1	256	6	10	11.9999
ddd2	chr1:981385-981655(+)$1	270	83	87	11.9999
!!==	chr18:47812400-47812651(-)$1	251	99	103	11.9999
GGGG	chr14:74761681-74761988(-)$1	307	35	39	11.9999
!!dd	chr3:128890272-128890528(-)$1	256	195	199	11.9999
gggg	chr9:107554075-107554333(-)$1	258	9	13	11.9999
$$$$	chr6:31601508-31601808(+)$1	300	156	160	11.9999
HH::	chr16:22339692-22339976(+)$1	284	7	11	11.9999
hhhh	chr3:49161939-49162192(-)$1	253	59	63	11.9999
FDDD	chr14:24656876-24657124(-)$1	248	129	133	11.9999
ddd:	chr8:145001402-145001658(-)$1	256	239	243	11.9999
ee]a	chr6:24290991-24291300(-)$1	309	98	102	11.9999
ee%%	chr7:100850878-100851182(-)$1	304	25	29	11.9999
HHHH	chr14:105916453-105916731(+)$1	278	208	212	11.9999
IIII	chr4:75023922-75024240(+)$1	318	71	75	11.9999
JJJ}	chr3:53213691-53213981(+)$1	290	199	203	11.9999
ddnn	chr16:28847414-28847667(+)$1	253	29	33	11.9999
EEVV	chr5:141009204-141009496(-)$1	292	70	74	11.9999
EEKK	chr7:100275228-100275479(+)$1	251	55	59	11.9999
eeee	chr20:3781226-3781495(+)$1	269	163	167	11.9999
ggcc	chr3:48462021-48462293(-)$1	272	37	41	11.9999
CCa!	chr22:22049060-22049345(+)$1	285	46	50	11.9999
cooo	chr19:39924122-39924380(-)$1	258	76	80	11.9999
dddm	chr8:145140016-145140302(+)$1	286	25	29	11.9999
ffff	chr5:1321595-1321943(-)$1	348	194	198	11.9999
DDYY	chr11:118899771-118900033(-)$1	262	102	106	11.9999
ddd]	chr9:116270696-116270956(+)$1	260	164	168	11.9999
cc[b	chr17:17716456-17716720(-)$1	264	39	43	11.9999
qqqq	chr5:138629682-138629974(+)$1	292	35	39	11.9999
:EEE	chr17:33463062-33463382(-)$1	320	2	6	11.9999
DDD{	chr11:72408423-72408663(-)$1	240	21	25	11.9999
bb!!	chr6:33169376-33169638(+)$1	262	57	61	11.9999
hhhh	chr2:241513017-241513329(+)$1	312	26	30	11.9999
a22d	chr16:67693147-67693390(-)$1	243	113	117	11.9999
DD{D	chr2:219143800-219144112(-)$1	312	7	11	11.9999
bbmm	chr16:67979038-67979300(-)$1	262	29	33	11.9999
>>>>	chr19:46026991-46027250(+)$1	259	144	148	11.9999
cc22	chr1:40777658-40777913(-)$1	255	157	161	11.9999
b]dd	chr8:145620270-145620509(-)$1	239	197	201	11.9999
D{FF	chr17:43011871-43012152(-)$1	281	40	44	11.9999
====	chr11:47269956-47270223(-)$1	267	188	192	11.9999
cccc	chr17:79662134-79662380(+)$1	246	114	118	11.9999
ffff	chr7:73021239-73021531(-)$1	292	66	70	11.9999
ffff	chr21:47976854-47977133(+)$1	279	46	50	11.9999
ccmm	chr6:31937124-31937429(+)$1	305	73	77	11.9999
FFFF	chr16:66839569-66839863(-)$1	294	49	53	11.9999
HHHH	chr3:128628978-128629270(+)$1	292	14	18	11.9999
ccc]	chr7:2414122-2414368(+)$1	246	151	155	11.9999
a[cc	chr6:33164003-33164256(-)$1	253	46	50	11.9999
ee!!	chr14:24108973-24109186(+)$1	213	111	115	11.9999
ddd:	chr16:88785772-88786087(-)$1	315	289	293	11.9999
CC}G	chr9:136661528-136661795(-)$1	267	245	249	11.9999
b[bb	chr17:80045686-80045931(-)$1	245	95	99	11.9999
B{DD	chr20:60885720-60885989(-)$1	269	32	36	11.9999
}DDD	chr6:43596564-43596830(-)$1	266	117	121	11.9999
eee[	chr17:79650981-79651237(+)$1	256	4	8	11.9999
eee:	chr19:10218481-10218773(+)$1	292	49	53	11.9999
mmff	chr20:39795158-39795430(+)$1	272	77	81	11.9999
CCC}	chr11:63992889-63993144(-)$1	255	219	223	11.9999
gg22	chr19:50365764-50366009(-)$1	245	215	219	11.9999
C}A}	chr19:11512704-11512994(-)$1	290	104	108	11.9999
b22b	chr16:1370544-1370796(+)$1	252	232	236	11.9999
EEKK	chr17:40266154-40266400(-)$1	246	25	29	11.9999
ee::	chr22:50721773-50722015(-)$1	242	76	80	11.9999
eeee	chr3:38413970-38414270(+)$1	300	257	261	11.9999

#DB
)...	chr6:37138567-37138862(+)$1	1	88	92	11.9999
((((	chr7:75615490-75615767(+)$1	1	69	73	11.9999
..))	chr19:45563709-45563935(+)$1	1	16	20	11.9999
((((	chr14:64921483-64921778(+)$1	1	194	198	11.9999
(.((	chr3:52473977-52474215(-)$1	1	2	6	11.9999
....	chr9:139886926-139887202(+)$1	1	88	92	11.9999
))))	chr1:89279305-89279572(+)$1	1	111	115	11.9999
((..	chr20:30136848-30137149(+)$1	1	69	73	11.9999
....	chr7:72721370-72721638(-)$1	1	10	14	11.9999
))))	chr11:72407541-72407819(-)$1	1	226	230	11.9999
((((	chr12:57492547-57492803(-)$1	1	6	10	11.9999
))).	chr1:981385-981655(+)$1	1	83	87	11.9999
..((	chr18:47812400-47812651(-)$1	1	99	103	11.9999
((((	chr14:74761681-74761988(-)$1	1	35	39	11.9999
..((	chr3:128890272-128890528(-)$1	1	195	199	11.9999
((((	chr9:107554075-107554333(-)$1	1	9	13	11.9999
....	chr6:31601508-31601808(+)$1	1	156	160	11.9999
((..	chr16:22339692-22339976(+)$1	1	7	11	11.9999
((((	chr3:49161939-49162192(-)$1	1	59	63	11.9999
((((	chr14:24656876-24657124(-)$1	1	129	133	11.9999
))).	chr8:145001402-145001658(-)$1	1	239	243	11.9999
)).)	chr6:24290991-24291300(-)$1	1	98	102	11.9999
((..	chr7:100850878-100851182(-)$1	1	25	29	11.9999
))))	chr14:105916453-105916731(+)$1	1	208	212	11.9999
((((	chr4:75023922-75024240(+)$1	1	71	75	11.9999
))).	chr3:53213691-53213981(+)$1	1	199	203	11.9999
((..	chr16:28847414-28847667(+)$1	1	29	33	11.9999
((..	chr5:141009204-141009496(-)$1	1	70	74	11.9999
((..	chr7:100275228-100275479(+)$1	1	55	59	11.9999
((((	chr20:3781226-3781495(+)$1	1	163	167	11.9999
))((	chr3:48462021-48462293(-)$1	1	37	41	11.9999
(((.	chr22:22049060-22049345(+)$1	1	46	50	11.9999
(...	chr19:39924122-39924380(-)$1	1	76	80	11.9999
(((.	chr8:145140016-145140302(+)$1	1	25	29	11.9999
))))	chr5:1321595-1321943(-)$1	1	194	198	11.9999
))..	chr11:118899771-118900033(-)$1	1	102	106	11.9999
))).	chr9:116270696-116270956(+)$1	1	164	168	11.9999
((.(	chr17:17716456-17716720(-)$1	1	39	43	11.9999
....	chr5:138629682-138629974(+)$1	1	35	39	11.9999
.(((	chr17:33463062-33463382(-)$1	1	2	6	11.9999
(((.	chr11:72408423-72408663(-)$1	1	21	25	11.9999
((..	chr6:33169376-33169638(+)$1	1	57	61	11.9999
((((	chr2:241513017-241513329(+)$1	1	26	30	11.9999
)..)	chr16:67693147-67693390(-)$1	1	113	117	11.9999
((.(	chr2:219143800-219144112(-)$1	1	7	11	11.9999
((..	chr16:67979038-67979300(-)$1	1	29	33	11.9999
....	chr19:46026991-46027250(+)$1	1	144	148	11.9999
))..	chr1:40777658-40777913(-)$1	1	157	161	11.9999
).))	chr8:145620270-145620509(-)$1	1	197	201	11.9999
(.((	chr17:43011871-43012152(-)$1	1	40	44	11.9999
((((	chr11:47269956-47270223(-)$1	1	188	192	11.9999
((((	chr17:79662134-79662380(+)$1	1	114	118	11.9999
((((	chr7:73021239-73021531(-)$1	1	66	70	11.9999
))))	chr21:47976854-47977133(+)$1	1	46	50	11.9999
((..	chr6:31937124-31937429(+)$1	1	73	77	11.9999
((((	chr16:66839569-66839863(-)$1	1	49	53	11.9999
((((	chr3:128628978-128629270(+)$1	1	14	18	11.9999
))).	chr7:2414122-2414368(+)$1	1	151	155	11.9999
(.((	chr6:33164003-33164256(-)$1	1	46	50	11.9999
((..	chr14:24108973-24109186(+)$1	1	111	115	11.9999
))).	chr16:88785772-88786087(-)$1	1	289	293	11.9999
)).)	chr9:136661528-136661795(-)$1	1	245	249	11.9999
(.((	chr17:80045686-80045931(-)$1	1	95	99	11.9999
(.((	chr20:60885720-60885989(-)$1	1	32	36	11.9999
.)))	chr6:43596564-43596830(-)$1	1	117	121	11.9999
(((.	chr17:79650981-79651237(+)$1	1	4	8	11.9999
))).	chr19:10218481-10218773(+)$1	1	49	53	11.9999
..))	chr20:39795158-39795430(+)$1	1	77	81	11.9999
))).	chr11:63992889-63993144(-)$1	1	219	223	11.9999
))..	chr19:50365764-50366009(-)$1	1	215	219	11.9999
).).	chr19:11512704-11512994(-)$1	1	104	108	11.9999
)..)	chr16:1370544-1370796(+)$1	1	232	236	11.9999
((..	chr17:40266154-40266400(-)$1	1	25	29	11.9999
))..	chr22:50721773-50722015(-)$1	1	76	80	11.9999
))))	chr3:38413970-38414270(+)$1	1	257	261	11.9999

#PSSM
G : 0.95	g : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	

#score	899.9999999999995
#seq	75
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_transcript_m1_run1.nuc.txt

#NT
GGU	chr16:2591342-2591603(+)$1	261	8	11	9.0000
GGU	chr11:3012757-3013011(-)$1	254	47	50	9.0000
ggu	chr4:454931-455200(-)$1	269	7	10	9.0000
GGU	chr8:109260306-109260563(-)$1	257	20	23	9.0000
GGU	chr2:232573827-232574071(+)$1	244	118	121	9.0000
GGU	chr1:2174373-2174624(+)$1	251	27	30	9.0000
GGU	chr14:103071381-103071667(+)$1	286	114	117	9.0000
ggu	chr13:20615396-20615637(+)$1	241	19	22	9.0000
GGU	chr19:29021034-29021261(-)$1	227	151	154	9.0000
ggu	chr8:126029124-126029422(+)$1	298	3	6	9.0000
GGU	chr18:77887867-77888135(+)$1	268	58	61	9.0000
GGU	chr10:126832350-126832620(-)$1	270	12	15	9.0000
ggu	chr2:15661769-15662021(-)$1	252	87	90	9.0000
ggu	chr10:131951825-131952131(+)$1	306	2	5	9.0000
GGU	chr16:81483504-81483739(+)$1	235	45	48	9.0000
ggu	chr11:102287994-102288256(-)$1	262	75	78	9.0000
GGU	chr1:246109486-246109753(-)$1	267	96	99	9.0000
GGU	chr8:141536840-141537097(-)$1	257	18	21	9.0000
ggu	chr1:180667048-180667305(+)$1	257	17	20	9.0000
ggu	chr6:45274063-45274367(-)$1	304	12	15	9.0000
GGU	chr7:6074903-6075141(-)$1	238	6	9	9.0000
ggu	chr1:41644438-41644693(-)$1	255	49	52	9.0000
GGU	chr15:28509592-28509834(-)$1	242	90	93	9.0000
GGU	chr19:18964830-18965119(+)$1	289	16	19	9.0000
GGU	chr9:135819023-135819280(-)$1	257	112	115	9.0000
ggu	chr12:62733676-62733926(+)$1	250	63	66	9.0000
ggu	chr7:76195439-76195689(+)$1	250	8	11	9.0000
ggu	chr1:207523585-207523850(+)$1	265	111	114	9.0000
GGU	chr19:45981778-45981984(-)$1	206	30	33	9.0000
ggu	chr13:114194892-114195156(+)$1	264	68	71	9.0000
ggu	chr22:17276826-17277074(-)$1	248	203	206	9.0000
GGU	chr22:23534355-23534610(+)$1	255	65	68	9.0000
GGU	chr16:89499668-89499968(-)$1	300	64	67	9.0000
ggu	chr6:4874981-4875259(+)$1	278	22	25	9.0000
ggu	chr17:19851477-19851729(-)$1	252	87	90	9.0000
GGU	chr16:88658330-88658582(+)$1	252	25	28	9.0000
GGU	chr7:127391619-127391903(+)$1	284	93	96	9.0000
GGU	chr2:9143201-9143485(-)$1	284	4	7	9.0000
GGU	chr14:104162792-104163035(+)$1	243	34	37	9.0000
ggu	chr8:97696629-97696900(+)$1	271	1	4	9.0000
GGU	chr13:33162906-33163164(+)$1	258	133	136	9.0000
ggu	chrX:73186097-73186383(+)$1	286	11	14	9.0000
GGU	chr11:47193964-47194241(-)$1	277	46	49	9.0000
ggu	chr7:8108802-8109102(+)$1	300	39	42	9.0000
GGU	chr21:44267582-44267834(-)$1	252	217	220	9.0000
ggu	chr3:123638244-123638530(-)$1	286	4	7	9.0000
ggu	chr22:17275383-17275672(-)$1	289	18	21	9.0000
ggu	chr13:20617537-20617795(+)$1	258	4	7	9.0000
ggu	chr22:19815123-19815395(-)$1	272	41	44	9.0000
GGU	chr9:96295585-96295856(+)$1	271	77	80	9.0000
GGU	chr2:236404297-236404585(+)$1	288	44	47	9.0000
GGU	chr6:7150696-7150943(+)$1	247	66	69	9.0000
ggu	chr5:95115033-95115298(+)$1	265	39	42	9.0000
GGU	chr9:4855255-4855654(+)$1	399	27	30	9.0000
GGU	chr14:105240763-105241009(-)$1	246	99	102	9.0000
GGU	chrX:151141794-151142078(-)$1	284	67	70	9.0000
GGU	chr6:158981954-158982216(+)$1	262	5	8	9.0000
GGU	chr13:113968362-113968596(+)$1	234	199	202	9.0000
ggu	chr22:20109534-20109799(+)$1	265	21	24	9.0000
GGU	chr7:774926-775177(+)$1	251	22	25	9.0000
GGU	chr9:134271283-134271537(+)$1	254	135	138	9.0000
ggu	chr8:100058679-100058959(+)$1	280	9	12	9.0000
ggu	chr22:50262708-50262977(+)$1	269	3	6	9.0000
GGU	chr5:1330958-1331230(-)$1	272	12	15	9.0000
GGU	chr22:50693333-50693669(-)$1	336	133	136	9.0000
ggu	chr2:44219499-44219778(-)$1	279	103	106	9.0000
GGU	chr12:132476963-132477218(+)$1	255	10	13	9.0000
GGU	chr11:989819-990065(+)$1	246	9	12	9.0000
GGU	chr12:121159746-121159994(+)$1	248	55	58	9.0000
ggu	chr16:23863369-23863690(+)$1	321	118	121	9.0000
ggu	chr7:921599-921846(+)$1	247	75	78	9.0000
GGU	chr12:133369019-133369365(-)$1	346	3	6	9.0000
ggu	chr1:52765195-52765458(+)$1	263	9	12	9.0000
GGU	chr16:48417473-48417724(-)$1	251	0	3	9.0000
ggu	chr15:59199649-59199920(-)$1	271	108	111	9.0000
GGU	chr7:152131590-152131889(-)$1	299	66	69	9.0000
GGU	chr13:113870304-113870571(+)$1	267	12	15	9.0000
GGU	chr16:1428245-1428525(-)$1	280	8	11	9.0000
GGU	chr3:15887830-15888079(-)$1	249	13	16	9.0000
GGU	chr5:1803341-1803632(+)$1	291	41	44	9.0000
ggu	chr15:51822283-51822536(-)$1	253	7	10	9.0000
GGU	chr19:6421800-6422068(-)$1	268	26	29	9.0000
GGU	chr16:88995528-88995781(-)$1	253	10	13	9.0000
GGU	chr21:44395377-44395637(+)$1	260	7	10	9.0000
GGU	chr1:228275917-228276193(+)$1	276	0	3	9.0000
GGU	chr8:6592453-6592721(+)$1	268	89	92	9.0000
ggu	chr1:46402007-46402258(+)$1	251	79	82	9.0000
GGU	chr1:29241561-29241838(+)$1	277	7	10	9.0000
GGU	chr10:17486429-17486788(-)$1	359	39	42	9.0000
GGU	chr1:114312243-114312501(-)$1	258	98	101	9.0000
ggu	chr20:36709889-36710120(+)$1	231	110	113	9.0000
GGU	chr7:158551636-158551899(-)$1	263	165	168	9.0000
ggu	chr4:1901728-1901993(+)$1	265	74	77	9.0000
GGU	chr5:95085375-95085628(+)$1	253	36	39	9.0000
GGU	chr11:64846254-64846505(-)$1	251	6	9	9.0000
GGU	chr11:692889-693147(-)$1	258	7	10	9.0000
ggu	chr12:132481275-132481590(+)$1	315	78	81	9.0000
ggu	chr2:38555250-38555543(-)$1	293	128	131	9.0000
GGU	chr7:26238867-26239112(-)$1	245	163	166	9.0000

#otherMatches

#Struct PSSM
ddd	chr19:574872-575121(+)$1	249	0	3	9.0000
:bb	chr16:2591342-2591603(+)$1	261	8	11	9.0000
ddd	chr11:3012757-3013011(-)$1	254	47	50	9.0000
hhh	chr4:454931-455200(-)$1	269	7	10	9.0000
ma2	chr8:109260306-109260563(-)$1	257	20	23	9.0000
:::	chr2:232573827-232574071(+)$1	244	118	121	9.0000
GGG	chr1:2174373-2174624(+)$1	251	27	30	9.0000
nnn	chr14:103071381-103071667(+)$1	286	114	117	9.0000
ccc	chr13:20615396-20615637(+)$1	241	19	22	9.0000
vvv	chr19:29021034-29021261(-)$1	227	151	154	9.0000
GGG	chr8:126029124-126029422(+)$1	298	3	6	9.0000
ddd	chr18:77887867-77888135(+)$1	268	58	61	9.0000
KHH	chr10:126832350-126832620(-)$1	270	12	15	9.0000
2ee	chr2:15661769-15662021(-)$1	252	87	90	9.0000
::H	chr10:131951825-131952131(+)$1	306	2	5	9.0000
ggg	chr16:81483504-81483739(+)$1	235	45	48	9.0000
eeu	chr11:102287994-102288256(-)$1	262	75	78	9.0000
:::	chr1:246109486-246109753(-)$1	267	96	99	9.0000
DD{	chr8:141536840-141537097(-)$1	257	18	21	9.0000
eee	chr1:180667048-180667305(+)$1	257	17	20	9.0000
hhh	chr6:45274063-45274367(-)$1	304	12	15	9.0000
cc[	chr7:6074903-6075141(-)$1	238	6	9	9.0000
eee	chr1:41644438-41644693(-)$1	255	49	52	9.0000
DDH	chr15:28509592-28509834(-)$1	242	90	93	9.0000
EEE	chr19:18964830-18965119(+)$1	289	16	19	9.0000
{II	chr9:135819023-135819280(-)$1	257	112	115	9.0000
bb[	chr12:62733676-62733926(+)$1	250	63	66	9.0000
eee	chr7:76195439-76195689(+)$1	250	8	11	9.0000
iii	chr1:207523585-207523850(+)$1	265	111	114	9.0000
FFF	chr19:45981778-45981984(-)$1	206	30	33	9.0000
ii5	chr13:114194892-114195156(+)$1	264	68	71	9.0000
hhh	chr22:17276826-17277074(-)$1	248	203	206	9.0000
::c	chr22:23534355-23534610(+)$1	255	65	68	9.0000
eee	chr16:89499668-89499968(-)$1	300	64	67	9.0000
HH{	chr6:4874981-4875259(+)$1	278	22	25	9.0000
lhh	chr17:19851477-19851729(-)$1	252	87	90	9.0000
mmm	chr16:88658330-88658582(+)$1	252	25	28	9.0000
hhh	chr7:127391619-127391903(+)$1	284	93	96	9.0000
d!!	chr2:9143201-9143485(-)$1	284	4	7	9.0000
dd!	chr14:104162792-104163035(+)$1	243	34	37	9.0000
B{A	chr8:97696629-97696900(+)$1	271	1	4	9.0000
LLL	chr13:33162906-33163164(+)$1	258	133	136	9.0000
FFF	chrX:73186097-73186383(+)$1	286	11	14	9.0000
MMC	chr11:47193964-47194241(-)$1	277	46	49	9.0000
GGG	chr7:8108802-8109102(+)$1	300	39	42	9.0000
dd[	chr21:44267582-44267834(-)$1	252	217	220	9.0000
enn	chr3:123638244-123638530(-)$1	286	4	7	9.0000
ddd	chr22:17275383-17275672(-)$1	289	18	21	9.0000
:ii	chr13:20617537-20617795(+)$1	258	4	7	9.0000
fff	chr22:19815123-19815395(-)$1	272	41	44	9.0000
ddd	chr9:96295585-96295856(+)$1	271	77	80	9.0000
dd]	chr2:236404297-236404585(+)$1	288	44	47	9.0000
5cc	chr6:7150696-7150943(+)$1	247	66	69	9.0000
4cc	chr5:95115033-95115298(+)$1	265	39	42	9.0000
ggg	chr9:4855255-4855654(+)$1	399	27	30	9.0000
EEE	chr14:105240763-105241009(-)$1	246	99	102	9.0000
hho	chrX:151141794-151142078(-)$1	284	67	70	9.0000
ggo	chr6:158981954-158982216(+)$1	262	5	8	9.0000
qqa	chr13:113968362-113968596(+)$1	234	199	202	9.0000
hhh	chr22:20109534-20109799(+)$1	265	21	24	9.0000
GGG	chr7:774926-775177(+)$1	251	22	25	9.0000
]a2	chr9:134271283-134271537(+)$1	254	135	138	9.0000
{EE	chr8:100058679-100058959(+)$1	280	9	12	9.0000
:JJ	chr22:50262708-50262977(+)$1	269	3	6	9.0000
GGG	chr5:1330958-1331230(-)$1	272	12	15	9.0000
ddd	chr22:50693333-50693669(-)$1	336	133	136	9.0000
fff	chr2:44219499-44219778(-)$1	279	103	106	9.0000
!!b	chr12:132476963-132477218(+)$1	255	10	13	9.0000
DRR	chr11:989819-990065(+)$1	246	9	12	9.0000
ggg	chr12:121159746-121159994(+)$1	248	55	58	9.0000
gg]	chr16:23863369-23863690(+)$1	321	118	121	9.0000
dd&	chr7:921599-921846(+)$1	247	75	78	9.0000
FFF	chr12:133369019-133369365(-)$1	346	3	6	9.0000
enn	chr1:52765195-52765458(+)$1	263	9	12	9.0000
HHH	chr16:48417473-48417724(-)$1	251	0	3	9.0000
ddd	chr15:59199649-59199920(-)$1	271	108	111	9.0000
FFF	chr7:152131590-152131889(-)$1	299	66	69	9.0000
hhh	chr13:113870304-113870571(+)$1	267	12	15	9.0000
fff	chr16:1428245-1428525(-)$1	280	8	11	9.0000
FFF	chr3:15887830-15888079(-)$1	249	13	16	9.0000
{AK	chr5:1803341-1803632(+)$1	291	41	44	9.0000
bbn	chr15:51822283-51822536(-)$1	253	7	10	9.0000
eee	chr19:6421800-6422068(-)$1	268	26	29	9.0000
DDD	chr16:88995528-88995781(-)$1	253	10	13	9.0000
h[e	chr21:44395377-44395637(+)$1	260	7	10	9.0000
bb[	chr1:228275917-228276193(+)$1	276	0	3	9.0000
===	chr8:6592453-6592721(+)$1	268	89	92	9.0000
ddd	chr1:46402007-46402258(+)$1	251	79	82	9.0000
f!!	chr1:29241561-29241838(+)$1	277	7	10	9.0000
ppp	chr10:17486429-17486788(-)$1	359	39	42	9.0000
ddd	chr1:114312243-114312501(-)$1	258	98	101	9.0000
e22	chr20:36709889-36710120(+)$1	231	110	113	9.0000
:dd	chr7:158551636-158551899(-)$1	263	165	168	9.0000
ccc	chr4:1901728-1901993(+)$1	265	74	77	9.0000
BBL	chr5:95085375-95085628(+)$1	253	36	39	9.0000
eee	chr11:64846254-64846505(-)$1	251	6	9	9.0000
ddd	chr11:692889-693147(-)$1	258	7	10	9.0000
c!!	chr12:132481275-132481590(+)$1	315	78	81	9.0000
gg[	chr2:38555250-38555543(-)$1	293	128	131	9.0000
fcc	chr7:26238867-26239112(-)$1	245	163	166	9.0000

#DB
(((	chr19:574872-575121(+)$1	1	0	3	9.0000
.((	chr16:2591342-2591603(+)$1	1	8	11	9.0000
)))	chr11:3012757-3013011(-)$1	1	47	50	9.0000
(((	chr4:454931-455200(-)$1	1	7	10	9.0000
.).	chr8:109260306-109260563(-)$1	1	20	23	9.0000
...	chr2:232573827-232574071(+)$1	1	118	121	9.0000
(((	chr1:2174373-2174624(+)$1	1	27	30	9.0000
...	chr14:103071381-103071667(+)$1	1	114	117	9.0000
(((	chr13:20615396-20615637(+)$1	1	19	22	9.0000
...	chr19:29021034-29021261(-)$1	1	151	154	9.0000
(((	chr8:126029124-126029422(+)$1	1	3	6	9.0000
(((	chr18:77887867-77888135(+)$1	1	58	61	9.0000
.((	chr10:126832350-126832620(-)$1	1	12	15	9.0000
.))	chr2:15661769-15662021(-)$1	1	87	90	9.0000
..(	chr10:131951825-131952131(+)$1	1	2	5	9.0000
(((	chr16:81483504-81483739(+)$1	1	45	48	9.0000
((.	chr11:102287994-102288256(-)$1	1	75	78	9.0000
...	chr1:246109486-246109753(-)$1	1	96	99	9.0000
((.	chr8:141536840-141537097(-)$1	1	18	21	9.0000
(((	chr1:180667048-180667305(+)$1	1	17	20	9.0000
(((	chr6:45274063-45274367(-)$1	1	12	15	9.0000
((.	chr7:6074903-6075141(-)$1	1	6	9	9.0000
)))	chr1:41644438-41644693(-)$1	1	49	52	9.0000
(((	chr15:28509592-28509834(-)$1	1	90	93	9.0000
(((	chr19:18964830-18965119(+)$1	1	16	19	9.0000
.((	chr9:135819023-135819280(-)$1	1	112	115	9.0000
((.	chr12:62733676-62733926(+)$1	1	63	66	9.0000
(((	chr7:76195439-76195689(+)$1	1	8	11	9.0000
(((	chr1:207523585-207523850(+)$1	1	111	114	9.0000
(((	chr19:45981778-45981984(-)$1	1	30	33	9.0000
)).	chr13:114194892-114195156(+)$1	1	68	71	9.0000
)))	chr22:17276826-17277074(-)$1	1	203	206	9.0000
..(	chr22:23534355-23534610(+)$1	1	65	68	9.0000
(((	chr16:89499668-89499968(-)$1	1	64	67	9.0000
((.	chr6:4874981-4875259(+)$1	1	22	25	9.0000
.))	chr17:19851477-19851729(-)$1	1	87	90	9.0000
...	chr16:88658330-88658582(+)$1	1	25	28	9.0000
(((	chr7:127391619-127391903(+)$1	1	93	96	9.0000
(..	chr2:9143201-9143485(-)$1	1	4	7	9.0000
((.	chr14:104162792-104163035(+)$1	1	34	37	9.0000
(.(	chr8:97696629-97696900(+)$1	1	1	4	9.0000
...	chr13:33162906-33163164(+)$1	1	133	136	9.0000
(((	chrX:73186097-73186383(+)$1	1	11	14	9.0000
..(	chr11:47193964-47194241(-)$1	1	46	49	9.0000
(((	chr7:8108802-8109102(+)$1	1	39	42	9.0000
((.	chr21:44267582-44267834(-)$1	1	217	220	9.0000
(..	chr3:123638244-123638530(-)$1	1	4	7	9.0000
(((	chr22:17275383-17275672(-)$1	1	18	21	9.0000
.((	chr13:20617537-20617795(+)$1	1	4	7	9.0000
)))	chr22:19815123-19815395(-)$1	1	41	44	9.0000
)))	chr9:96295585-96295856(+)$1	1	77	80	9.0000
)).	chr2:236404297-236404585(+)$1	1	44	47	9.0000
.))	chr6:7150696-7150943(+)$1	1	66	69	9.0000
.))	chr5:95115033-95115298(+)$1	1	39	42	9.0000
(((	chr9:4855255-4855654(+)$1	1	27	30	9.0000
)))	chr14:105240763-105241009(-)$1	1	99	102	9.0000
((.	chrX:151141794-151142078(-)$1	1	67	70	9.0000
((.	chr6:158981954-158982216(+)$1	1	5	8	9.0000
..)	chr13:113968362-113968596(+)$1	1	199	202	9.0000
(((	chr22:20109534-20109799(+)$1	1	21	24	9.0000
(((	chr7:774926-775177(+)$1	1	22	25	9.0000
.).	chr9:134271283-134271537(+)$1	1	135	138	9.0000
.((	chr8:100058679-100058959(+)$1	1	9	12	9.0000
.((	chr22:50262708-50262977(+)$1	1	3	6	9.0000
(((	chr5:1330958-1331230(-)$1	1	12	15	9.0000
(((	chr22:50693333-50693669(-)$1	1	133	136	9.0000
)))	chr2:44219499-44219778(-)$1	1	103	106	9.0000
..(	chr12:132476963-132477218(+)$1	1	10	13	9.0000
(..	chr11:989819-990065(+)$1	1	9	12	9.0000
(((	chr12:121159746-121159994(+)$1	1	55	58	9.0000
)).	chr16:23863369-23863690(+)$1	1	118	121	9.0000
((.	chr7:921599-921846(+)$1	1	75	78	9.0000
(((	chr12:133369019-133369365(-)$1	1	3	6	9.0000
(..	chr1:52765195-52765458(+)$1	1	9	12	9.0000
(((	chr16:48417473-48417724(-)$1	1	0	3	9.0000
(((	chr15:59199649-59199920(-)$1	1	108	111	9.0000
(((	chr7:152131590-152131889(-)$1	1	66	69	9.0000
(((	chr13:113870304-113870571(+)$1	1	12	15	9.0000
(((	chr16:1428245-1428525(-)$1	1	8	11	9.0000
(((	chr3:15887830-15888079(-)$1	1	13	16	9.0000
.(.	chr5:1803341-1803632(+)$1	1	41	44	9.0000
((.	chr15:51822283-51822536(-)$1	1	7	10	9.0000
(((	chr19:6421800-6422068(-)$1	1	26	29	9.0000
(((	chr16:88995528-88995781(-)$1	1	10	13	9.0000
(.(	chr21:44395377-44395637(+)$1	1	7	10	9.0000
((.	chr1:228275917-228276193(+)$1	1	0	3	9.0000
)))	chr8:6592453-6592721(+)$1	1	89	92	9.0000
)))	chr1:46402007-46402258(+)$1	1	79	82	9.0000
(..	chr1:29241561-29241838(+)$1	1	7	10	9.0000
...	chr10:17486429-17486788(-)$1	1	39	42	9.0000
(((	chr1:114312243-114312501(-)$1	1	98	101	9.0000
)..	chr20:36709889-36710120(+)$1	1	110	113	9.0000
.((	chr7:158551636-158551899(-)$1	1	165	168	9.0000
(((	chr4:1901728-1901993(+)$1	1	74	77	9.0000
((.	chr5:95085375-95085628(+)$1	1	36	39	9.0000
(((	chr11:64846254-64846505(-)$1	1	6	9	9.0000
(((	chr11:692889-693147(-)$1	1	7	10	9.0000
(..	chr12:132481275-132481590(+)$1	1	78	81	9.0000
((.	chr2:38555250-38555543(-)$1	1	128	131	9.0000
(((	chr7:26238867-26239112(-)$1	1	163	166	9.0000

#PSSM
G : 0.62	g : 0.38	
G : 0.62	g : 0.38	
U : 0.62	u : 0.38	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_UTR_m1_run1.nuc.txt

#NT
AGUaagaa	chr4:190864255-190864524(+)$1	269	99	107	15.6037
AGGAAAAA	chr12:104341365-104341589(+)$1	224	211	219	15.6981
AGGAAGAA	chr14:31588842-31589161(-)$1	319	87	95	20.0377
AGGAAGAG	chr5:891174-891448(-)$1	274	44	52	15.6981
AGGCAGAA	chr2:220097759-220098107(+)$1	348	54	62	15.4150
aggaagaa	chr8:61193486-61193807(-)$1	321	162	170	20.0377
AAGAAGAA	chr1:160188072-160188331(-)$1	259	107	115	17.1132
AGGAAGAU	chr1:114447178-114447501(-)$1	323	156	164	15.5094
AUGAAGAA	chr15:69727933-69728211(+)$1	278	163	171	16.9245
AGGAACAA	chr2:153532975-153533232(-)$1	257	211	219	15.5094
AAGAAGAA	chr12:57910117-57910459(+)$1	342	232	240	17.1132
AGGAUGAA	chr5:137891318-137891534(-)$1	216	60	68	16.0754
AUGAAGAA	chr5:65474546-65474844(+)$1	298	112	120	16.9245
GGGAAGAA	chr12:76442879-76443081(-)$1	202	55	63	15.6037
AGGAGGAA	chr12:76449762-76449989(-)$1	227	46	54	15.9811
AUGAAGAA	chr12:93881172-93881500(+)$1	328	131	139	16.9245
GGGAAGAA	chr1:6585812-6586164(-)$1	352	269	277	15.6037
CGGAAGAA	chr1:206905888-206906154(+)$1	266	130	138	15.5094
AGGAAAAA	chr5:148904599-148904834(-)$1	235	111	119	15.6981
AGGAAGCA	chr15:59179446-59179738(-)$1	292	281	289	15.3207
AAGAAGAA	chr20:2638507-2638752(+)$1	245	88	96	17.1132
AGGAAGAA	chr17:27000287-27000546(+)$1	259	169	177	20.0377
AGGAAGAA	chr6:37344600-37344840(+)$1	240	129	137	20.0377
AGCAAGAA	chr3:195792213-195792453(-)$1	240	49	57	15.5094
aagaagaa	chr15:93545432-93545646(+)$1	214	13	21	17.1132
aggaagaa	chr14:102551023-102551231(-)$1	208	26	34	20.0377
AGGAAAAA	chr17:27001456-27001681(+)$1	225	212	220	15.6981
AGGAGGAA	chr1:155883829-155884168(-)$1	339	135	143	15.9811
AGGAAGAA	chr2:100019019-100019317(-)$1	298	52	60	20.0377
AGGGAGAA	chrX:53438972-53439246(-)$1	274	41	49	15.4150
aggaagaa	chr4:174253102-174253323(-)$1	221	43	51	20.0377
AGGAUGAA	chr1:156303246-156303466(-)$1	220	84	92	16.0754
AGGAUGAA	chr6:31504233-31504468(-)$1	235	42	50	16.0754
AAGAAGAA	chr19:10291353-10291561(-)$1	208	91	99	17.1132
AGGAAGAA	chr10:70525596-70525826(+)$1	230	46	54	20.0377
AGGAAGAA	chr10:70545869-70546075(+)$1	206	32	40	20.0377
AAGAAGAA	chr8:104454920-104455236(+)$1	316	157	165	17.1132
AGGAAGAA	chr4:1729698-1729960(+)$1	262	92	100	20.0377
AUGAAGAA	chr3:196666024-196666316(-)$1	292	20	28	16.9245
AGGAGGAA	chr19:10229262-10229485(-)$1	223	133	141	15.9811
aagaagaa	chr14:102550988-102551196(-)$1	208	17	25	17.1132
AGAAAGAA	chr7:140477730-140477976(-)$1	246	215	223	15.5094
AUGAAGAA	chr8:124383382-124383605(-)$1	223	61	69	16.9245
AUGAAGAA	chr3:195780224-195780499(-)$1	275	181	189	16.9245
AGGAAGAG	chr6:111279867-111280071(+)$1	204	151	159	15.6981
AGGAAGAA	chr14:102550075-102550344(-)$1	269	113	121	20.0377
AAGAAGAA	chr9:123232289-123232499(-)$1	210	91	99	17.1132
UGGAAGAA	chr1:145441079-145441325(+)$1	246	144	152	15.5094
AGGAUGAA	chr16:11941495-11941723(-)$1	228	113	121	16.0754
AGUAAGAA	chr4:39905590-39905867(-)$1	277	61	69	15.6037
AGGUAGAA	chr12:76442140-76442344(-)$1	204	58	66	15.4150
AGGAAGGA	chr17:38784938-38785218(-)$1	280	81	89	15.3207

#otherMatches

#Struct PSSM
DDD{EEEE	chr13:79894607-79894879(-)$1	272	38	46	15.6981
]ffffff:	chr4:190864255-190864524(+)$1	269	99	107	15.6037
GGGGYYFF	chr12:104341365-104341589(+)$1	224	211	219	15.6981
eeee$$$$	chr14:31588842-31589161(-)$1	319	87	95	20.0377
nbb]dddd	chr5:891174-891448(-)$1	274	44	52	15.6981
3ffffff:	chr2:220097759-220098107(+)$1	348	54	62	15.4150
:DDDDKKE	chr8:61193486-61193807(-)$1	321	162	170	20.0377
dddd]ddd	chr1:160188072-160188331(-)$1	259	107	115	17.1132
DDHHHHHH	chr1:114447178-114447501(-)$1	323	156	164	15.5094
hh[cccmm	chr15:69727933-69728211(+)$1	278	163	171	16.9245
gggggggD	chr2:153532975-153533232(-)$1	257	211	219	15.5094
JJJJJJJJ	chr12:57910117-57910459(+)$1	342	232	240	17.1132
hhhhhh33	chr5:137891318-137891534(-)$1	216	60	68	16.0754
bb888888	chr5:65474546-65474844(+)$1	298	112	120	16.9245
c:EEEEEM	chr12:76442879-76443081(-)$1	202	55	63	15.6037
!bb^^^^^	chr12:76449762-76449989(-)$1	227	46	54	15.9811
:HHHHHHH	chr12:93881172-93881500(+)$1	328	131	139	16.9245
ggggggll	chr1:6585812-6586164(-)$1	352	269	277	15.6037
]ccc::::	chr1:206905888-206906154(+)$1	266	130	138	15.5094
dddd::::	chr5:148904599-148904834(-)$1	235	111	119	15.6981
ffff::::	chr15:59179446-59179738(-)$1	292	281	289	15.3207
::::::::	chr20:2638507-2638752(+)$1	245	88	96	17.1132
dddddd]c	chr17:27000287-27000546(+)$1	259	169	177	20.0377
"ccc####	chr6:37344600-37344840(+)$1	240	129	137	20.0377
JJJJJJJJ	chr3:195792213-195792453(-)$1	240	49	57	15.5094
HHH:::::	chr15:93545432-93545646(+)$1	214	13	21	17.1132
c+++++++	chr14:102551023-102551231(-)$1	208	26	34	20.0377
\\\\\\\D	chr17:27001456-27001681(+)$1	225	212	220	15.6981
HHHHHKKB	chr1:155883829-155884168(-)$1	339	135	143	15.9811
dddd]ccc	chr2:100019019-100019317(-)$1	298	52	60	20.0377
5ffffff:	chrX:53438972-53439246(-)$1	274	41	49	15.4150
::::::::	chr4:174253102-174253323(-)$1	221	43	51	20.0377
bdddd333	chr1:156303246-156303466(-)$1	220	84	92	16.0754
======22	chr6:31504233-31504468(-)$1	235	42	50	16.0754
h:::::::	chr19:10291353-10291561(-)$1	208	91	99	17.1132
fff333cc	chr10:70525596-70525826(+)$1	230	46	54	20.0377
DDDDOOOO	chr10:70545869-70546075(+)$1	206	32	40	20.0377
vvvvvvvv	chr8:104454920-104455236(+)$1	316	157	165	17.1132
EEE:::::	chr4:1729698-1729960(+)$1	262	92	100	20.0377
::::::::	chr3:196666024-196666316(-)$1	292	20	28	16.9245
:dddd[a[	chr19:10229262-10229485(-)$1	223	133	141	15.9811
^^^^^^^^	chr14:102550988-102551196(-)$1	208	17	25	17.1132
nffffffG	chr7:140477730-140477976(-)$1	246	215	223	15.5094
cccccc::	chr8:124383382-124383605(-)$1	223	61	69	16.9245
CCC}DDDD	chr3:195780224-195780499(-)$1	275	181	189	16.9245
:::::::b	chr6:111279867-111280071(+)$1	204	151	159	15.6981
YYFFFFFF	chr14:102550075-102550344(-)$1	269	113	121	20.0377
iiiiiiii	chr9:123232289-123232499(-)$1	210	91	99	17.1132
a]dddd]=	chr1:145441079-145441325(+)$1	246	144	152	15.5094
dddddddd	chr16:11941495-11941723(-)$1	228	113	121	16.0754
hhhhhhh3	chr4:39905590-39905867(-)$1	277	61	69	15.6037
!!ccc+++	chr12:76442140-76442344(-)$1	204	58	66	15.4150
HHHHHHbb	chr17:38784938-38785218(-)$1	280	81	89	15.3207

#DB
(((.((((	chr13:79894607-79894879(-)$1	1	38	46	15.6981
.)))))).	chr4:190864255-190864524(+)$1	1	99	107	15.6037
))))..))	chr12:104341365-104341589(+)$1	1	211	219	15.6981
((((....	chr14:31588842-31589161(-)$1	1	87	95	20.0377
.)).))))	chr5:891174-891448(-)$1	1	44	52	15.6981
.)))))).	chr2:220097759-220098107(+)$1	1	54	62	15.4150
.((((..(	chr8:61193486-61193807(-)$1	1	162	170	20.0377
)))).)))	chr1:160188072-160188331(-)$1	1	107	115	17.1132
))))))))	chr1:114447178-114447501(-)$1	1	156	164	15.5094
((.(((..	chr15:69727933-69728211(+)$1	1	163	171	16.9245
))))))))	chr2:153532975-153533232(-)$1	1	211	219	15.5094
))))))))	chr12:57910117-57910459(+)$1	1	232	240	17.1132
))))))..	chr5:137891318-137891534(-)$1	1	60	68	16.0754
))......	chr5:65474546-65474844(+)$1	1	112	120	16.9245
).(((((.	chr12:76442879-76443081(-)$1	1	55	63	15.6037
.((.....	chr12:76449762-76449989(-)$1	1	46	54	15.9811
.(((((((	chr12:93881172-93881500(+)$1	1	131	139	16.9245
((((((..	chr1:6585812-6586164(-)$1	1	269	277	15.6037
.)))....	chr1:206905888-206906154(+)$1	1	130	138	15.5094
))))....	chr5:148904599-148904834(-)$1	1	111	119	15.6981
))))....	chr15:59179446-59179738(-)$1	1	281	289	15.3207
........	chr20:2638507-2638752(+)$1	1	88	96	17.1132
)))))).)	chr17:27000287-27000546(+)$1	1	169	177	20.0377
.(((....	chr6:37344600-37344840(+)$1	1	129	137	20.0377
((((((((	chr3:195792213-195792453(-)$1	1	49	57	15.5094
(((.....	chr15:93545432-93545646(+)$1	1	13	21	17.1132
(.......	chr14:102551023-102551231(-)$1	1	26	34	20.0377
.......)	chr17:27001456-27001681(+)$1	1	212	220	15.6981
(((((..(	chr1:155883829-155884168(-)$1	1	135	143	15.9811
)))).)))	chr2:100019019-100019317(-)$1	1	52	60	20.0377
.)))))).	chrX:53438972-53439246(-)$1	1	41	49	15.4150
........	chr4:174253102-174253323(-)$1	1	43	51	20.0377
)))))...	chr1:156303246-156303466(-)$1	1	84	92	16.0754
))))))..	chr6:31504233-31504468(-)$1	1	42	50	16.0754
).......	chr19:10291353-10291561(-)$1	1	91	99	17.1132
)))...))	chr10:70525596-70525826(+)$1	1	46	54	20.0377
((((....	chr10:70545869-70546075(+)$1	1	32	40	20.0377
........	chr8:104454920-104455236(+)$1	1	157	165	17.1132
(((.....	chr4:1729698-1729960(+)$1	1	92	100	20.0377
........	chr3:196666024-196666316(-)$1	1	20	28	16.9245
.((((.(.	chr19:10229262-10229485(-)$1	1	133	141	15.9811
........	chr14:102550988-102551196(-)$1	1	17	25	17.1132
.)))))))	chr7:140477730-140477976(-)$1	1	215	223	15.5094
))))))..	chr8:124383382-124383605(-)$1	1	61	69	16.9245
))).))))	chr3:195780224-195780499(-)$1	1	181	189	16.9245
.......(	chr6:111279867-111280071(+)$1	1	151	159	15.6981
..))))))	chr14:102550075-102550344(-)$1	1	113	121	20.0377
((((((((	chr9:123232289-123232499(-)$1	1	91	99	17.1132
).)))).)	chr1:145441079-145441325(+)$1	1	144	152	15.5094
((((((((	chr16:11941495-11941723(-)$1	1	113	121	16.0754
))))))).	chr4:39905590-39905867(-)$1	1	61	69	15.6037
..(((...	chr12:76442140-76442344(-)$1	1	58	66	15.4150
((((((((	chr17:38784938-38785218(-)$1	1	81	89	15.3207

#PSSM
A : 0.83	a : 0.09	G : 0.03	C : 0.01	U : 0.01	
G : 0.67	A : 0.11	U : 0.11	g : 0.05	a : 0.03	
G : 0.83	g : 0.09	U : 0.03	C : 0.01	A : 0.01	
A : 0.83	a : 0.11	C : 0.01	G : 0.01	U : 0.01	
A : 0.75	a : 0.11	U : 0.07	G : 0.05	
G : 0.81	g : 0.11	A : 0.05	C : 0.01	
A : 0.84	a : 0.11	C : 0.01	G : 0.01	
A : 0.81	a : 0.11	G : 0.05	U : 0.01	

#score	897.6603773584908
#seq	53
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_UTR_m1_run1.nuc.txt

#NT
GCCGCUG	chr2:220408156-220408422(-)$1	266	13	20	13.8703
GCCCCAG	chr20:60911307-60911584(-)$1	277	162	169	14.1481
GCCCCUG	chr16:89839605-89839850(-)$1	245	101	108	17.4814
GCCCCUG	chr9:116997787-116998016(+)$1	229	174	181	17.4814
ggcccug	chr1:44003767-44004005(+)$1	238	112	119	13.8703
CCCCCUG	chr21:46915235-46915447(+)$1	212	16	23	13.5925
GCCCCUG	chr9:128003449-128003675(-)$1	226	179	186	17.4814
CCCCCUG	chr20:17608143-17608393(-)$1	250	14	21	13.5925
GCCCCAG	chr2:11484516-11484760(-)$1	244	126	133	14.1481
GCCCCUG	chr9:116831879-116832089(-)$1	210	12	19	17.4814
GGCCCUG	chr6:43109569-43109847(+)$1	278	1	8	13.8703
GUCCCUG	chr7:2671530-2671798(+)$1	268	181	188	13.8703
GCCUCUG	chr9:116999160-116999366(+)$1	206	147	154	13.8703
GCCCCAG	chr9:117032907-117033160(+)$1	253	14	21	14.1481
GCCCCUG	chr17:46052495-46052763(+)$1	268	248	255	17.4814
GCCCCGG	chr6:119670186-119670424(-)$1	238	20	27	13.6851
GCCUCUG	chr17:27047497-27047725(+)$1	228	58	65	13.8703
GCCCCUG	chr9:116997816-116998032(+)$1	216	145	152	17.4814
GCCCCUG	chr16:2802588-2802878(+)$1	290	109	116	17.4814
GCCUCUG	chr9:116999166-116999409(+)$1	243	141	148	13.8703
GCCCCCG	chr17:79918551-79918888(-)$1	337	6	13	13.6851
GCCCCAG	chr17:79812989-79813207(-)$1	218	197	204	14.1481
GGCCCUG	chr9:117062261-117062503(+)$1	242	9	16	13.8703
GCCCCUG	chr7:45928138-45928456(+)$1	318	86	93	17.4814
GCCGCUG	chr9:35072260-35072512(-)$1	252	46	53	13.8703
GCCGCUG	chr9:117027601-117027841(+)$1	240	188	195	13.8703
CCCCCUG	chr2:220435942-220436229(-)$1	287	41	48	13.5925
GCCCCGG	chr9:117052428-117052708(+)$1	280	95	102	13.6851
GUCCCUG	chr17:76968289-76968551(-)$1	262	224	231	13.8703
GCCCCAG	chr20:60889758-60889985(-)$1	227	4	11	14.1481
GUCCCUG	chr9:117044668-117044912(+)$1	244	107	114	13.8703
gcccccg	chr9:117002399-117002642(+)$1	243	63	70	13.6851
GCCCCAG	chr16:88851453-88851675(-)$1	222	72	79	14.1481
GCCUCUG	chr17:27047493-27047697(+)$1	204	62	69	13.8703
GCCCCUG	chr9:116997779-116997987(+)$1	208	182	189	17.4814
ACCCCUG	chr17:26697113-26697386(-)$1	273	167	174	13.3148
GUCCCUG	chr17:76968194-76968440(-)$1	246	113	120	13.8703
GCCCCUG	chr9:117005724-117005941(+)$1	217	19	26	17.4814
GUCCCUG	chr9:117073226-117073444(+)$1	218	117	124	13.8703
GCCCCAG	chr8:11705147-11705433(-)$1	286	42	49	14.1481
GCCUCUG	chr4:1809190-1809416(+)$1	226	159	166	13.8703
CCCCCUG	chr21:46915171-46915394(+)$1	223	80	87	13.5925
GCCGCUG	chr6:24357741-24358074(-)$1	333	29	36	13.8703
GCCCCUG	chr11:67810657-67810935(+)$1	278	211	218	17.4814
CCCCCUG	chr11:118921645-118921920(-)$1	275	4	11	13.5925
ACCCCUG	chr9:117015063-117015311(+)$1	248	125	132	13.3148
GCCCCUG	chr9:96009765-96010121(+)$1	356	223	230	17.4814
GCCCCUG	chr17:80193757-80193980(+)$1	223	169	176	17.4814
GCCCCUG	chr16:89839650-89839893(-)$1	243	144	151	17.4814
GCCGCUG	chr6:167369764-167370029(-)$1	265	222	229	13.8703
GCCCCUG	chr1:11994685-11994925(+)$1	240	156	163	17.4814
GGCCCUG	chr9:116840348-116840591(-)$1	243	116	123	13.8703
GGCCCUG	chr17:76969076-76969292(-)$1	216	160	167	13.8703

#otherMatches

#Struct PSSM
ccccccm	chr1:43996623-43996864(+)$1	241	123	130	17.4814
G{EEEEE	chr2:220408156-220408422(-)$1	266	13	20	13.8703
offffff	chr20:60911307-60911584(-)$1	277	162	169	14.1481
bbccc]c	chr16:89839605-89839850(-)$1	245	101	108	17.4814
cc333dd	chr9:116997787-116998016(+)$1	229	174	181	17.4814
GG:DDDD	chr1:44003767-44004005(+)$1	238	112	119	13.8703
:eeeee"	chr21:46915235-46915447(+)$1	212	16	23	13.5925
FFFFFcc	chr9:128003449-128003675(-)$1	226	179	186	17.4814
dddmmmm	chr20:17608143-17608393(-)$1	250	14	21	13.5925
BB:bb""	chr2:11484516-11484760(-)$1	244	126	133	14.1481
F::::ee	chr9:116831879-116832089(-)$1	210	12	19	17.4814
CCLLLEE	chr6:43109569-43109847(+)$1	278	1	8	13.8703
&eeeee"	chr7:2671530-2671798(+)$1	268	181	188	13.8703
!!bbooo	chr9:116999160-116999366(+)$1	206	147	154	13.8703
c]ddddF	chr9:117032907-117033160(+)$1	253	14	21	14.1481
JJJJJJJ	chr17:46052495-46052763(+)$1	268	248	255	17.4814
GGGG:cc	chr6:119670186-119670424(-)$1	238	20	27	13.6851
ccc[eee	chr17:27047497-27047725(+)$1	228	58	65	13.8703
cc333dd	chr9:116997816-116998032(+)$1	216	145	152	17.4814
]cccbb2	chr16:2802588-2802878(+)$1	290	109	116	17.4814
!!bbooo	chr9:116999166-116999409(+)$1	243	141	148	13.8703
EEEE{BB	chr17:79918551-79918888(-)$1	337	6	13	13.6851
EE}HHHH	chr17:79812989-79813207(-)$1	218	197	204	14.1481
FFFFFdd	chr9:117062261-117062503(+)$1	242	9	16	13.8703
c[bbccc	chr7:45928138-45928456(+)$1	318	86	93	17.4814
dd]bb]c	chr9:35072260-35072512(-)$1	252	46	53	13.8703
ddddddd	chr9:117027601-117027841(+)$1	240	188	195	13.8703
bb]dddd	chr2:220435942-220436229(-)$1	287	41	48	13.5925
fffffcc	chr9:117052428-117052708(+)$1	280	95	102	13.6851
rrrrrbb	chr17:76968289-76968551(-)$1	262	224	231	13.8703
HHHHccc	chr20:60889758-60889985(-)$1	227	4	11	14.1481
dddd]cc	chr9:117044668-117044912(+)$1	244	107	114	13.8703
CCCMMMM	chr9:117002399-117002642(+)$1	243	63	70	13.6851
=====::	chr16:88851453-88851675(-)$1	222	72	79	14.1481
ccc[eee	chr17:27047493-27047697(+)$1	204	62	69	13.8703
DAADDDD	chr9:116997779-116997987(+)$1	208	182	189	17.4814
$$$$$ee	chr17:26697113-26697386(-)$1	273	167	174	13.3148
CCCKKHH	chr17:76968194-76968440(-)$1	246	113	120	13.8703
ddd"""f	chr9:117005724-117005941(+)$1	217	19	26	17.4814
[eeeeel	chr9:117073226-117073444(+)$1	218	117	124	13.8703
JJJJJJJ	chr8:11705147-11705433(-)$1	286	42	49	14.1481
eeggggg	chr4:1809190-1809416(+)$1	226	159	166	13.8703
:eeeee"	chr21:46915171-46915394(+)$1	223	80	87	13.5925
HHHHHHH	chr6:24357741-24358074(-)$1	333	29	36	13.8703
HHHHHH:	chr11:67810657-67810935(+)$1	278	211	218	17.4814
llccc::	chr11:118921645-118921920(-)$1	275	4	11	13.5925
ccceeee	chr9:117015063-117015311(+)$1	248	125	132	13.3148
ffffffb	chr9:96009765-96010121(+)$1	356	223	230	17.4814
C?????C	chr17:80193757-80193980(+)$1	223	169	176	17.4814
bbccc]c	chr16:89839650-89839893(-)$1	243	144	151	17.4814
iiiiiff	chr6:167369764-167370029(-)$1	265	222	229	13.8703
eemmmme	chr1:11994685-11994925(+)$1	240	156	163	17.4814
ffff!!b	chr9:116840348-116840591(-)$1	243	116	123	13.8703
ccccccn	chr17:76969076-76969292(-)$1	216	160	167	13.8703

#DB
((((((.	chr1:43996623-43996864(+)$1	1	123	130	17.4814
(.(((((	chr2:220408156-220408422(-)$1	1	13	20	13.8703
.))))))	chr20:60911307-60911584(-)$1	1	162	169	14.1481
))))).)	chr16:89839605-89839850(-)$1	1	101	108	17.4814
))...))	chr9:116997787-116998016(+)$1	1	174	181	17.4814
)).((((	chr1:44003767-44004005(+)$1	1	112	119	13.8703
.(((((.	chr21:46915235-46915447(+)$1	1	16	23	13.5925
)))))((	chr9:128003449-128003675(-)$1	1	179	186	17.4814
(((....	chr20:17608143-17608393(-)$1	1	14	21	13.5925
)).((..	chr2:11484516-11484760(-)$1	1	126	133	14.1481
(....((	chr9:116831879-116832089(-)$1	1	12	19	17.4814
((...((	chr6:43109569-43109847(+)$1	1	1	8	13.8703
.(((((.	chr7:2671530-2671798(+)$1	1	181	188	13.8703
..((...	chr9:116999160-116999366(+)$1	1	147	154	13.8703
).))))(	chr9:117032907-117033160(+)$1	1	14	21	14.1481
)))))))	chr17:46052495-46052763(+)$1	1	248	255	17.4814
((((.((	chr6:119670186-119670424(-)$1	1	20	27	13.6851
(((.(((	chr17:27047497-27047725(+)$1	1	58	65	13.8703
))...))	chr9:116997816-116998032(+)$1	1	145	152	17.4814
.))))).	chr16:2802588-2802878(+)$1	1	109	116	17.4814
..((...	chr9:116999166-116999409(+)$1	1	141	148	13.8703
((((.((	chr17:79918551-79918888(-)$1	1	6	13	13.6851
)).))))	chr17:79812989-79813207(-)$1	1	197	204	14.1481
(((((((	chr9:117062261-117062503(+)$1	1	9	16	13.8703
(.(((((	chr7:45928138-45928456(+)$1	1	86	93	17.4814
)).)).)	chr9:35072260-35072512(-)$1	1	46	53	13.8703
(((((((	chr9:117027601-117027841(+)$1	1	188	195	13.8703
)).))))	chr2:220435942-220436229(-)$1	1	41	48	13.5925
)))))))	chr9:117052428-117052708(+)$1	1	95	102	13.6851
.....))	chr17:76968289-76968551(-)$1	1	224	231	13.8703
(((((((	chr20:60889758-60889985(-)$1	1	4	11	14.1481
)))).))	chr9:117044668-117044912(+)$1	1	107	114	13.8703
(((....	chr9:117002399-117002642(+)$1	1	63	70	13.6851
)))))..	chr16:88851453-88851675(-)$1	1	72	79	14.1481
(((.(((	chr17:27047493-27047697(+)$1	1	62	69	13.8703
)))))))	chr9:116997779-116997987(+)$1	1	182	189	17.4814
.....((	chr17:26697113-26697386(-)$1	1	167	174	13.3148
(((..((	chr17:76968194-76968440(-)$1	1	113	120	13.8703
(((...(	chr9:117005724-117005941(+)$1	1	19	26	17.4814
.(((((.	chr9:117073226-117073444(+)$1	1	117	124	13.8703
(((((((	chr8:11705147-11705433(-)$1	1	42	49	14.1481
)))))))	chr4:1809190-1809416(+)$1	1	159	166	13.8703
.(((((.	chr21:46915171-46915394(+)$1	1	80	87	13.5925
(((((((	chr6:24357741-24358074(-)$1	1	29	36	13.8703
)))))).	chr11:67810657-67810935(+)$1	1	211	218	17.4814
..)))..	chr11:118921645-118921920(-)$1	1	4	11	13.5925
)))))))	chr9:117015063-117015311(+)$1	1	125	132	13.3148
)))))))	chr9:96009765-96010121(+)$1	1	223	230	17.4814
).....)	chr17:80193757-80193980(+)$1	1	169	176	17.4814
))))).)	chr16:89839650-89839893(-)$1	1	144	151	17.4814
)))))((	chr6:167369764-167370029(-)$1	1	222	229	13.8703
((....)	chr1:11994685-11994925(+)$1	1	156	163	17.4814
((((..(	chr9:116840348-116840591(-)$1	1	116	123	13.8703
((((((.	chr17:76969076-76969292(-)$1	1	160	167	13.8703

#PSSM
G : 0.83	C : 0.09	g : 0.03	A : 0.03	
C : 0.79	U : 0.09	G : 0.07	g : 0.01	c : 0.01	
C : 0.96	c : 0.03	
C : 0.77	G : 0.09	U : 0.09	c : 0.03	
C : 0.96	c : 0.03	
U : 0.77	A : 0.12	G : 0.03	u : 0.01	C : 0.01	c : 0.01	
G : 0.96	g : 0.03	

#score	805.4814814814803
#seq	54
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_transcript_m3_run1.nuc.txt

#NT
cccccaccgccccuc	chr16:88534301-88534610(+)$1	309	111	126	21.4285
CCCCCGCCGGCCCCC	chr19:5237739-5237990(-)$1	251	123	138	21.5306
cgccguccgcccccg	chr8:87355084-87355370(+)$1	286	168	183	20.4081
GGCCCGCCGCCCCCU	chr3:184032592-184032827(+)$1	235	201	216	21.0204
CCCCCUCCGCUCGCC	chr16:30935101-30935357(+)$1	256	82	97	18.7755
CGCCCCCUUCCCCGC	chr19:1478878-1479174(-)$1	296	249	264	16.6326
cgccccgcgcccccg	chr7:101459831-101460043(+)$1	212	33	48	21.0204
CUCCCUGCGCCCCUG	chr16:81526364-81526666(+)$1	302	230	245	15.4081
uccccgccgccgccc	chr2:240322463-240322743(-)$1	280	132	147	19.0816
cgcccccgggccccg	chr2:201171571-201171830(+)$1	259	19	34	16.3265
CGCCGUCCUCCCCGC	chr2:241499690-241499930(-)$1	240	109	124	17.1428
cgcccucccgccgcc	chr13:33160998-33161259(+)$1	261	122	137	17.0408
CUCCCUGCCCCCUCC	chr9:94183676-94183949(-)$1	273	204	219	15.0000
CCCCCUCCGCUCCUC	chr22:20785786-20786061(-)$1	275	214	229	19.5918
CGUCCCCCGCACCCC	chr7:158379439-158379755(-)$1	316	290	305	20.3061
GGCGCUCCGGCGCCC	chr6:89791370-89791634(+)$1	264	161	176	15.5102
CCCCGUCCGCCCCCC	chr10:98592969-98593227(+)$1	258	38	53	21.7346
CGCUCCCGGCUCCCC	chr10:15412319-15412584(-)$1	265	25	40	17.0408
CGCCCGCAGCCCCGC	chr19:19779811-19780099(+)$1	288	185	200	20.2040
cggccgccgccccgc	chr2:68478960-68479234(-)$1	274	221	236	20.9183
GGCCCAGCGCCGCCC	chr6:151187465-151187749(+)$1	284	192	207	17.9591
CGGCCACCGCUGCCC	chr19:4066380-4066624(-)$1	244	9	24	17.2448
CUGUCUCCGCCGCCC	chr17:36955687-36955938(-)$1	251	213	228	15.4081
CGCCCCUCCCCCUCC	chr19:926927-927183(+)$1	256	113	128	16.5306
cgcccuccgcccccc	chr3:136470613-136470866(-)$1	253	198	213	28.3673
CCCGCUCCUCCCCGC	chr7:111202046-111202263(-)$1	217	72	87	16.1224
cgcgcgccccucccc	chr1:205718750-205719042(-)$1	292	149	164	17.8571
CGCCCUGCACCUCCC	chr17:79918200-79918452(-)$1	252	0	15	17.5510
UGCCCACCGCUGCCC	chr14:105337186-105337479(+)$1	293	79	94	17.6530
CGCUCCCCGGCCCCC	chr7:101459288-101459565(+)$1	277	248	263	20.5102
GGCCCUGCGGCCUCC	chr9:132252150-132252484(+)$1	334	73	88	14.6938
CGCCCGCCGCCUCAC	chr14:32546770-32547018(+)$1	248	194	209	20.2040
ggccccccgccccuc	chr2:25564034-25564274(-)$1	240	172	187	21.6326
UCCCCGCCGCCCCCA	chr6:158244659-158244908(+)$1	249	203	218	18.2653
ggcgCCCCGCUCCCC	chr6:16761024-16761306(-)$1	282	170	185	18.6734
GGCcccccgcccccu	chr5:92920552-92920811(+)$1	259	57	72	21.2244
GGUGCACCGCCCCCC	chr19:460147-460412(-)$1	265	137	152	17.3469
cgcccgcggccgcgc	chr7:105028782-105029043(-)$1	261	0	15	17.1428
UGCGCCCCGCCCCCC	chr20:3153781-3154046(-)$1	265	182	197	21.5306
CCCCCUAAGCCCCCC	chr12:49453412-49453657(-)$1	245	143	158	18.0612
CGCCCUGCCCCCUCC	chr14:103576038-103576321(+)$1	283	152	167	17.8571
ccgccgccgccgccc	chr9:140513757-140513979(+)$1	222	58	73	18.6734
CUUCCCCCGCCCCCC	chrX:16805156-16805441(+)$1	285	97	112	21.1224
CGGGCACCGCCCCCU	chr9:136856524-136856814(-)$1	290	136	151	16.6326
cggccgccgcccccg	chr7:101460120-101460354(+)$1	234	4	19	20.5102
cgccccccgcgcccc	chr19:460830-461083(-)$1	253	121	136	24.0816
CUCCCUCCGCGCCAC	chr3:197281820-197282099(-)$1	279	21	36	18.2653
agcccugcccacccc	chr11:2008419-2008714(-)$1	295	227	242	14.6938

#otherMatches

#Struct PSSM
LLDDDD{HHHHHHHH	chr19:7968979-7969218(+)$1	239	83	98	19.5918
qqqqqqqqbb::ccc	chr16:88534301-88534610(+)$1	309	111	126	21.4285
bggggggg22eeeee	chr19:5237739-5237990(-)$1	251	123	138	21.5306
======:CCCDDDDd	chr8:87355084-87355370(+)$1	286	168	183	20.4081
GGGGGYYCCCDDDD}	chr3:184032592-184032827(+)$1	235	201	216	21.0204
========cccbbdd	chr16:30935101-30935357(+)$1	256	82	97	18.7755
FFFFFF}HHHHHHHH	chr19:1478878-1479174(-)$1	296	249	264	16.6326
D{A{GGGGGGGKKDD	chr7:101459831-101460043(+)$1	212	33	48	21.0204
GGGGGGGA}DDDD::	chr16:81526364-81526666(+)$1	302	230	245	15.4081
mmmmbb22bb:bb[b	chr2:240322463-240322743(-)$1	280	132	147	19.0816
fffff$$$$$ggggg	chr2:201171571-201171830(+)$1	259	19	34	16.3265
JJJJJJ:::::dddd	chr2:241499690-241499930(-)$1	240	109	124	17.1428
===]a333eeeee==	chr13:33160998-33161259(+)$1	261	122	137	17.0408
eeeffffffccc]dd	chr9:94183676-94183949(-)$1	273	204	219	15.0000
cccaddddcccbb]b	chr22:20785786-20786061(-)$1	275	214	229	19.5918
:::::eeeeeqqqqq	chr7:158379439-158379755(-)$1	316	290	305	20.3061
II}BB}CCCBB}CCC	chr6:89791370-89791634(+)$1	264	161	176	15.5102
==========a[ccc	chr10:98592969-98593227(+)$1	258	38	53	21.7346
ddd]cccbb::eeee	chr10:15412319-15412584(-)$1	265	25	40	17.0408
JJJJJJ:::ffffff	chr19:19779811-19780099(+)$1	288	185	200	20.2040
eeee]==========	chr2:68478960-68479234(-)$1	274	221	236	20.9183
ggggdddd]ffffff	chr6:151187465-151187749(+)$1	284	192	207	17.9591
dddllldddd]bbDD	chr19:4066380-4066624(-)$1	244	9	24	17.2448
FFFFFFBB}AFFFFF	chr17:36955687-36955938(-)$1	251	213	228	15.4081
:ggggggg"""dddd	chr19:926927-927183(+)$1	256	113	128	16.5306
FFFZZZEEEEE}A}F	chr3:136470613-136470866(-)$1	253	198	213	28.3673
oooeeeee:::::dd	chr7:111202046-111202263(-)$1	217	72	87	16.1224
fffffcccbbggggg	chr1:205718750-205719042(-)$1	292	149	164	17.8571
:eeeee####ggggg	chr17:79918200-79918452(-)$1	252	0	15	17.5510
xxxxxxggggggg55	chr14:105337186-105337479(+)$1	293	79	94	17.6530
fff22ffffffdddd	chr7:101459288-101459565(+)$1	277	248	263	20.5102
ggggccc[bblllbb	chr9:132252150-132252484(+)$1	334	73	88	14.6938
EDDDD:ggggggg[c	chr14:32546770-32547018(+)$1	248	194	209	20.2040
=======22======	chr2:25564034-25564274(-)$1	240	172	187	21.6326
YYHHHHHHHH}GGGG	chr6:158244659-158244908(+)$1	249	203	218	18.2653
lllcccffffffeee	chr6:16761024-16761306(-)$1	282	170	185	18.6734
fflllffffff5555	chr5:92920552-92920811(+)$1	259	57	72	21.2244
LCCC{BBeeeeeddd	chr19:460147-460412(-)$1	265	137	152	17.3469
:::DDDD{CCCDDDD	chr7:105028782-105029043(-)$1	261	0	15	17.1428
fff]dddd]eeeee]	chr20:3153781-3154046(-)$1	265	182	197	21.5306
E::::::ddddeeee	chr12:49453412-49453657(-)$1	245	143	158	18.0612
::::::FFFFFFKKH	chr14:103576038-103576321(+)$1	283	152	167	17.8571
ddd!!ccc!!a[fff	chr9:140513757-140513979(+)$1	222	58	73	18.6734
B{EEEEE{EEEEEff	chrX:16805156-16805441(+)$1	285	97	112	21.1224
eeee####dddd$$$	chr9:136856524-136856814(-)$1	290	136	151	16.6326
E{DDDDMMMMDDDDe	chr7:101460120-101460354(+)$1	234	4	19	20.5102
CCCCCCBB}HHHHHH	chr19:460830-461083(-)$1	253	121	136	24.0816
ffff[ccc[bb&&&&	chr3:197281820-197282099(-)$1	279	21	36	18.2653
!bb"""bbqqqqqqq	chr11:2008419-2008714(-)$1	295	227	242	14.6938

#DB
..((((.((((((((	chr19:7968979-7969218(+)$1	1	83	98	19.5918
........))..(((	chr16:88534301-88534610(+)$1	1	111	126	21.4285
))))))))..)))))	chr19:5237739-5237990(-)$1	1	123	138	21.5306
)))))).)))))))(	chr8:87355084-87355370(+)$1	1	168	183	20.4081
)))))..))))))).	chr3:184032592-184032827(+)$1	1	201	216	21.0204
))))))))(((((((	chr16:30935101-30935357(+)$1	1	82	97	18.7755
)))))).))))))))	chr19:1478878-1479174(-)$1	1	249	264	16.6326
(.(.(((((((..((	chr7:101459831-101460043(+)$1	1	33	48	21.0204
)))))))).))))..	chr16:81526364-81526666(+)$1	1	230	245	15.4081
....))..)).((.(	chr2:240322463-240322743(-)$1	1	132	147	19.0816
(((((.....(((((	chr2:201171571-201171830(+)$1	1	19	34	16.3265
((((((.....((((	chr2:241499690-241499930(-)$1	1	109	124	17.1428
))).)...)))))))	chr13:33160998-33161259(+)$1	1	122	137	17.0408
)))))))))))).))	chr9:94183676-94183949(-)$1	1	204	219	15.0000
))))))))))))).)	chr22:20785786-20786061(-)$1	1	214	229	19.5918
.....(((((.....	chr7:158379439-158379755(-)$1	1	290	305	20.3061
)).)).))))).)))	chr6:89791370-89791634(+)$1	1	161	176	15.5102
(((((((((((.(((	chr10:98592969-98593227(+)$1	1	38	53	21.7346
))).)))))..((((	chr10:15412319-15412584(-)$1	1	25	40	17.0408
((((((...((((((	chr19:19779811-19780099(+)$1	1	185	200	20.2040
)))).))))))))))	chr2:68478960-68479234(-)$1	1	221	236	20.9183
)))))))).))))))	chr6:151187465-151187749(+)$1	1	192	207	17.9591
(((...)))).))((	chr19:4066380-4066624(-)$1	1	9	24	17.2448
)))))))).))))))	chr17:36955687-36955938(-)$1	1	213	228	15.4081
.(((((((...((((	chr19:926927-927183(+)$1	1	113	128	16.5306
)))...))))).).)	chr3:136470613-136470866(-)$1	1	198	213	28.3673
...))))).....((	chr7:111202046-111202263(-)$1	1	72	87	16.1224
)))))))))))))))	chr1:205718750-205719042(-)$1	1	149	164	17.8571
.(((((....(((((	chr17:79918200-79918452(-)$1	1	0	15	17.5510
......)))))))..	chr14:105337186-105337479(+)$1	1	79	94	17.6530
)))..))))))))))	chr7:101459288-101459565(+)$1	1	248	263	20.5102
(((((((.((...))	chr9:132252150-132252484(+)$1	1	73	88	14.6938
))))).(((((((.(	chr14:32546770-32547018(+)$1	1	194	209	20.2040
)))))))..))))))	chr2:25564034-25564274(-)$1	1	172	187	21.6326
..)))))))).))))	chr6:158244659-158244908(+)$1	1	203	218	18.2653
...))))))))))))	chr6:16761024-16761306(-)$1	1	170	185	18.6734
((...))))))....	chr5:92920552-92920811(+)$1	1	57	72	21.2244
.(((.((((((((((	chr19:460147-460412(-)$1	1	137	152	17.3469
...((((.(((((((	chr7:105028782-105029043(-)$1	1	0	15	17.1428
))).)))).))))).	chr20:3153781-3154046(-)$1	1	182	197	21.5306
(......((((((((	chr12:49453412-49453657(-)$1	1	143	158	18.0612
......((((((..(	chr14:103576038-103576321(+)$1	1	152	167	17.8571
(((..(((..(.(((	chr9:140513757-140513979(+)$1	1	58	73	18.6734
(.(((((.(((((((	chrX:16805156-16805441(+)$1	1	97	112	21.1224
((((....((((...	chr9:136856524-136856814(-)$1	1	136	151	16.6326
(.((((....(((((	chr7:101460120-101460354(+)$1	1	4	19	20.5102
)))))))).))))))	chr19:460830-461083(-)$1	1	121	136	24.0816
((((.(((.((....	chr3:197281820-197282099(-)$1	1	21	36	18.2653
.((...((.......	chr11:2008419-2008714(-)$1	1	227	242	14.6938

#PSSM
C : 0.46	c : 0.24	G : 0.12	U : 0.06	u : 0.04	g : 0.04	a : 0.02	
G : 0.40	g : 0.26	C : 0.14	U : 0.10	c : 0.08	
C : 0.53	c : 0.28	U : 0.06	g : 0.06	G : 0.06	
C : 0.46	c : 0.30	G : 0.10	U : 0.06	g : 0.04	u : 0.02	
C : 0.61	c : 0.32	G : 0.04	g : 0.02	
U : 0.28	C : 0.16	g : 0.12	u : 0.10	G : 0.10	c : 0.10	A : 0.10	a : 0.02	
C : 0.48	c : 0.30	G : 0.12	g : 0.04	U : 0.02	A : 0.02	
C : 0.57	c : 0.30	g : 0.04	A : 0.04	U : 0.02	G : 0.02	
G : 0.51	g : 0.28	U : 0.06	c : 0.06	C : 0.06	A : 0.02	
C : 0.57	c : 0.30	G : 0.08	g : 0.04	
C : 0.48	c : 0.28	U : 0.12	A : 0.02	u : 0.02	g : 0.02	G : 0.02	a : 0.02	
C : 0.51	c : 0.28	G : 0.10	g : 0.06	U : 0.04	
C : 0.55	c : 0.32	U : 0.08	G : 0.02	g : 0.02	
C : 0.48	c : 0.26	G : 0.08	u : 0.04	U : 0.04	g : 0.04	A : 0.04	
C : 0.57	c : 0.24	g : 0.08	U : 0.04	G : 0.02	A : 0.02	u : 0.02	

#score	921.5306122448984
#seq	49
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_CDS_m1_run2.nuc.txt

#NT
GCGAAUAGCCACUGCCAACAUGCUGGGCAUACGGAAAGUACUGAGCCCAUAUGACUUGACCCACAAGGGGAAAUACUGGGGCAAGUUCUACAUGCCCAAACGUGUGUAGUGAGUGUAGGAGAUAACUGUAUAUAGGCUACUGAAAGAAGGAUUCUGCAUUUCUAUUCCCCUCAGCCUACCCACUGAAGUCUUUGGGUAGCUCUUAAGCCAUAACUAAGGAGCAGCAUUUGAGUAGAUUUCUGAAAAACAAUGUUAUUUGUUGAUUUAAAAAGAAAACUGuauuuuuauuaaauaaaauuuaaaCAUCACUUCAGG	chr11:59573607-59573933(-)$1	326	5	320	410.0000

#otherMatches

#Struct PSSM
eeeeeooooooeeeeeCCC{EEEEE::hhhhhhhhoooooohhhhhhhh:hhhhhhhhnnnnnhhhhhhhh:FFFFFFLLLCCC::FFFFFF{DDDD{A{DDDDKKBB:::::::::::::ffffffmmmmffffffeeeee[a[bb[ccc[eeeee!!cccqqqqqqqqccc4444eeeee]ccc]bb]a]eeeeeBBYYDDDD}AZZZDDDDFFFFFF:::::::::::::::::::hhhhhhhhqqqqqqqqhhhhhhhh::::ffffffqqqqqqqqffffff::::CCCYYFFFFFFEEEEE}CCC::::	chr1:43629912-43630231(-)$1	319	3	318	410.0000
E{FFFFFF:ffffff!!eeeee[ggggggg!!ccc####ccc!!dddd####a!!bb!!cccmmmmccc22bb22a22dddd]cccccc22ggggggg22eeeeeffffffiiiiiiiii$$$$$bb$$$$$cccmmmmccc55555bb22iiiiiiiii:FFFFFFYYEEEEE::ffffff!!ammmma22ffffffffffff[bboooooobb]ffffff:::::::::::::::ggggggg$$$$$eeeee''''''''ffffff[eeeeepppppppeeeee]ffffff88888888eeeee333gggggg	chr11:59573607-59573933(-)$1	326	5	320	410.0000

#DB
(((((......)))))(((.(((((..((((((((......)))))))).((((((((.....)))))))).((((((...(((..((((((.((((.(.((((..((.............((((((....))))))(((((.(.((.(((.(((((..(((........)))....))))).))).)).).)))))))..)))).)...))))))))))...................((((((((........))))))))....((((((........))))))....)))..))))))))))).)))....	chr1:43629912-43630231(-)$1	1	3	318	410.0000
(.((((((.((((((..(((((.(((((((..(((....(((..((((....(..((..(((....)))..))..)..)))).))))))..)))))))..)))))))))))(((((((((.....((.....(((....))).....))..))))))))).))))))..)))))..((((((..(....)..))))))((((((.((......)).))))))...............(((((((.....(((((........((((((.(((((.......))))).))))))........)))))...))))))	chr11:59573607-59573933(-)$1	1	5	320	410.0000

#PSSM
G : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
C : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	u : 0.50	
A : 0.50	a : 0.50	
A : 0.50	u : 0.50	
G : 0.50	u : 0.50	
A : 0.50	u : 0.50	
U : 0.50	u : 0.50	
U : 0.50	u : 0.50	
G : 0.50	a : 0.50	
A : 0.50	u : 0.50	
G : 0.50	u : 0.50	
A : 0.50	a : 0.50	
A : 0.50	a : 0.50	
G : 0.50	a : 0.50	
U : 0.50	u : 0.50	
U : 0.50	a : 0.50	
A : 0.50	a : 0.50	
C : 0.50	a : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
U : 0.50	u : 0.50	
C : 0.50	u : 0.50	
C : 0.50	a : 0.50	
A : 0.50	a : 0.50	
U : 0.50	a : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	

#score	820.0
#seq	2
#width	315
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_CDS_m3_run1.nuc.txt

#NT
GUCUGUG	chr1:45981292-45981562(-)$1	270	41	48	13.1052
GGCCGUG	chr17:7479777-7480032(+)$1	255	196	203	12.4912
GGCUGUG	chr22:21984044-21984292(-)$1	248	84	91	16.9649
GGCUGUG	chr6:26056406-26056629(-)$1	223	110	117	16.9649
GCCUGUG	chr16:227296-227529(+)$1	233	225	232	13.1929
GGCUUUG	chr6:30691540-30691789(+)$1	249	103	110	12.7543
AGCUGUG	chr19:38800123-38800384(-)$1	261	20	27	12.8421
GGAUGUG	chrX:55035623-55035869(-)$1	246	136	143	12.4912
GGCCGUG	chr22:29694683-29694950(+)$1	267	86	93	12.4912
GCCUGUG	chr1:8922871-8923097(-)$1	226	178	185	13.1929
GGCUGUG	chrX:47062840-47063124(+)$1	284	117	124	16.9649
GGAUGUG	chrX:64949350-64949603(+)$1	253	17	24	12.4912
GUCUGUG	chr13:47354007-47354255(-)$1	248	86	93	13.1052
AGCUGUG	chr5:137909354-137909601(-)$1	247	32	39	12.8421
GGCGGUG	chr6:150117477-150117737(+)$1	260	155	162	12.4035
CGCUGUG	chr2:98264445-98264676(+)$1	231	78	85	12.6666
GACUGUG	chr2:62104025-62104272(-)$1	247	98	105	13.1052
GACUGUG	chrX:77369479-77369716(+)$1	237	52	59	13.1052
GGCUGUG	chr7:5568160-5568410(-)$1	250	107	114	16.9649
GGCUGGG	chr12:6643906-6644127(+)$1	221	135	142	13.9824
GGCUGUG	chr10:73579922-73580149(-)$1	227	8	15	16.9649
agcugug	chr18:43671588-43671882(-)$1	294	2	9	12.8421
GGCUGUG	chr3:127335808-127336046(+)$1	238	35	42	16.9649
GGCUGUG	chr12:21791249-21791504(-)$1	255	101	108	16.9649
GGCUGAG	chr3:48637009-48637243(-)$1	234	43	50	13.8070
GGCUGGG	chr11:67351534-67351740(+)$1	206	141	148	13.9824
GGCUGAG	chr16:88713407-88713669(-)$1	262	49	56	13.8070
ggcuggg	chr1:228284979-228285252(+)$1	273	9	16	13.9824
GGCUCUG	chr1:87379607-87379896(-)$1	289	41	48	12.7543
GGCUGUG	chr11:763283-763544(+)$1	261	120	127	16.9649
GGCUGGG	chr7:5569117-5569342(-)$1	225	188	195	13.9824
CGCUGUG	chr7:99690591-99690816(-)$1	225	148	155	12.6666
GGGUGUG	chr17:39914894-39915142(-)$1	248	233	240	12.4035
GGCUGGG	chr10:74034416-74034676(+)$1	260	153	160	13.9824
GGCUGUC	chr7:127724724-127724979(+)$1	255	225	232	12.1403
GGCUGGG	chr7:5569065-5569271(-)$1	206	117	124	13.9824
GGCUGUG	chr18:43669431-43669666(-)$1	235	66	73	16.9649
GCCUGUG	chr1:201104631-201104898(-)$1	267	219	226	13.1929
GGCUGUG	chr19:41265385-41265602(+)$1	217	72	79	16.9649
GGCUGAG	chr11:64084459-64084719(-)$1	260	46	53	13.8070
GCCUGUG	chr1:8922897-8923103(-)$1	206	184	191	13.1929
GGCAGUG	chr17:73842931-73843166(-)$1	235	190	197	12.4035
GGCUGAG	chr19:40330772-40331043(-)$1	271	13	20	13.8070
GGCUGGG	chr16:56642450-56642696(+)$1	246	151	158	13.9824
GGUUGUG	chr7:75686627-75686871(+)$1	244	138	145	12.4035
GUCUGUG	chr7:75694019-75694289(+)$1	270	84	91	13.1052
AGCUGUG	chr16:3715873-3716119(-)$1	246	155	162	12.8421
GGCUUUG	chr6:10725121-10725347(+)$1	226	91	98	12.7543
GGCUGAG	chr19:581405-581665(+)$1	260	112	119	13.8070
GGCUGGG	chr19:5894613-5894898(-)$1	285	113	120	13.9824
GGCUCUG	chr19:13051271-13051522(+)$1	251	12	19	12.7543
GACUGUG	chr5:10262599-10262831(+)$1	232	183	190	13.1052
GGCUGAG	chr12:56555069-56555298(+)$1	229	124	131	13.8070
GGCUGUG	chr10:73610838-73611063(-)$1	225	188	195	16.9649
GGCUCUG	chr19:2269423-2269650(+)$1	227	4	11	12.7543
GGCUUUG	chr15:76566658-76566936(-)$1	278	130	137	12.7543

#otherMatches

#Struct PSSM
EEEEE}B	chr17:26902387-26902663(-)$1	276	205	212	13.3684
DDAJJJJ	chr1:45981292-45981562(-)$1	270	41	48	13.1052
22dddd]	chr17:7479777-7480032(+)$1	255	196	203	12.4912
DDD}HHH	chr22:21984044-21984292(-)$1	248	84	91	16.9649
dddd]dd	chr6:26056406-26056629(-)$1	223	110	117	16.9649
CCC}BB:	chr16:227296-227529(+)$1	233	225	232	13.1929
gggggg'	chr6:30691540-30691789(+)$1	249	103	110	12.7543
dd=====	chr19:38800123-38800384(-)$1	261	20	27	12.8421
ggggg$$	chrX:55035623-55035869(-)$1	246	136	143	12.4912
BBKKCCC	chr22:29694683-29694950(+)$1	267	86	93	12.4912
gggFFFF	chr1:8922871-8923097(-)$1	226	178	185	13.1929
dddd]bb	chrX:47062840-47063124(+)$1	284	117	124	16.9649
e"""fff	chrX:64949350-64949603(+)$1	253	17	24	12.4912
ddd####	chr13:47354007-47354255(-)$1	248	86	93	13.1052
eeqqqqq	chr5:137909354-137909601(-)$1	247	32	39	12.8421
dd]ccc:	chr6:150117477-150117737(+)$1	260	155	162	12.4035
:ddddcc	chr2:98264445-98264676(+)$1	231	78	85	12.6666
ccc333c	chr2:62104025-62104272(-)$1	247	98	105	13.1052
dd[bb!!	chrX:77369479-77369716(+)$1	237	52	59	13.1052
ddd[ddd	chr7:5568160-5568410(-)$1	250	107	114	16.9649
dd[a[ff	chr12:6643906-6644127(+)$1	221	135	142	13.9824
EEEEKKA	chr10:73579922-73580149(-)$1	227	8	15	16.9649
EEEEE{B	chr18:43671588-43671882(-)$1	294	2	9	12.8421
!ffffff	chr3:127335808-127336046(+)$1	238	35	42	16.9649
lldddd]	chr12:21791249-21791504(-)$1	255	101	108	16.9649
iiiiii[	chr3:48637009-48637243(-)$1	234	43	50	13.8070
hhhhhdd	chr11:67351534-67351740(+)$1	206	141	148	13.9824
[eeeeec	chr16:88713407-88713669(-)$1	262	49	56	13.8070
ee####b	chr1:228284979-228285252(+)$1	273	9	16	13.9824
dd[eeee	chr1:87379607-87379896(-)$1	289	41	48	12.7543
eeemmmm	chr11:763283-763544(+)$1	261	120	127	16.9649
c]ddddb	chr7:5569117-5569342(-)$1	225	188	195	13.9824
lccc]cc	chr7:99690591-99690816(-)$1	225	148	155	12.6666
EEE}EEE	chr17:39914894-39915142(-)$1	248	233	240	12.4035
HH::ddd	chr10:74034416-74034676(+)$1	260	153	160	13.9824
lffffff	chr7:127724724-127724979(+)$1	255	225	232	12.1403
eeee]bb	chr7:5569065-5569271(-)$1	206	117	124	13.9824
i[cccmm	chr18:43669431-43669666(-)$1	235	66	73	16.9649
BBCCC}J	chr1:201104631-201104898(-)$1	267	219	226	13.1929
:cccooo	chr19:41265385-41265602(+)$1	217	72	79	16.9649
HHHHHHH	chr11:64084459-64084719(-)$1	260	46	53	13.8070
gggFFFF	chr1:8922897-8923103(-)$1	206	184	191	13.1929
eee:DDD	chr17:73842931-73843166(-)$1	235	190	197	12.4035
ccclllc	chr19:40330772-40331043(-)$1	271	13	20	13.8070
gggCCCC	chr16:56642450-56642696(+)$1	246	151	158	13.9824
yyyyyyy	chr7:75686627-75686871(+)$1	244	138	145	12.4035
FFFFFCC	chr7:75694019-75694289(+)$1	270	84	91	13.1052
eeellle	chr16:3715873-3716119(-)$1	246	155	162	12.8421
JJJJJJJ	chr6:10725121-10725347(+)$1	226	91	98	12.7543
ff[cccd	chr19:581405-581665(+)$1	260	112	119	13.8070
i[dddd[	chr19:5894613-5894898(-)$1	285	113	120	13.9824
{BBLLLI	chr19:13051271-13051522(+)$1	251	12	19	12.7543
b[bbmmm	chr5:10262599-10262831(+)$1	232	183	190	13.1052
eeeee[c	chr12:56555069-56555298(+)$1	229	124	131	13.8070
FFFFF}F	chr10:73610838-73611063(-)$1	225	188	195	16.9649
dddd[==	chr19:2269423-2269650(+)$1	227	4	11	12.7543
[bb!!dd	chr15:76566658-76566936(-)$1	278	130	137	12.7543

#DB
))))).)	chr17:26902387-26902663(-)$1	1	205	212	13.3684
(((((((	chr1:45981292-45981562(-)$1	1	41	48	13.1052
..)))).	chr17:7479777-7480032(+)$1	1	196	203	12.4912
))).)))	chr22:21984044-21984292(-)$1	1	84	91	16.9649
)))).))	chr6:26056406-26056629(-)$1	1	110	117	16.9649
))).)).	chr16:227296-227529(+)$1	1	225	232	13.1929
((((((.	chr6:30691540-30691789(+)$1	1	103	110	12.7543
(((((((	chr19:38800123-38800384(-)$1	1	20	27	12.8421
(((((..	chrX:55035623-55035869(-)$1	1	136	143	12.4912
((..(((	chr22:29694683-29694950(+)$1	1	86	93	12.4912
)))))))	chr1:8922871-8923097(-)$1	1	178	185	13.1929
)))).))	chrX:47062840-47063124(+)$1	1	117	124	16.9649
(...(((	chrX:64949350-64949603(+)$1	1	17	24	12.4912
(((....	chr13:47354007-47354255(-)$1	1	86	93	13.1052
((.....	chr5:137909354-137909601(-)$1	1	32	39	12.8421
)).))).	chr6:150117477-150117737(+)$1	1	155	162	12.4035
.((((((	chr2:98264445-98264676(+)$1	1	78	85	12.6666
)))...)	chr2:62104025-62104272(-)$1	1	98	105	13.1052
((.((..	chrX:77369479-77369716(+)$1	1	52	59	13.1052
(((.(((	chr7:5568160-5568410(-)$1	1	107	114	16.9649
((.(.((	chr12:6643906-6644127(+)$1	1	135	142	13.9824
((((..(	chr10:73579922-73580149(-)$1	1	8	15	16.9649
(((((.(	chr18:43671588-43671882(-)$1	1	2	9	12.8421
.((((((	chr3:127335808-127336046(+)$1	1	35	42	16.9649
..)))).	chr12:21791249-21791504(-)$1	1	101	108	16.9649
((((((.	chr3:48637009-48637243(-)$1	1	43	50	13.8070
(((((((	chr11:67351534-67351740(+)$1	1	141	148	13.9824
.((((((	chr16:88713407-88713669(-)$1	1	49	56	13.8070
((....(	chr1:228284979-228285252(+)$1	1	9	16	13.9824
((.((((	chr1:87379607-87379896(-)$1	1	41	48	12.7543
(((....	chr11:763283-763544(+)$1	1	120	127	16.9649
).)))))	chr7:5569117-5569342(-)$1	1	188	195	13.9824
.))).))	chr7:99690591-99690816(-)$1	1	148	155	12.6666
))).)))	chr17:39914894-39915142(-)$1	1	233	240	12.4035
((..(((	chr10:74034416-74034676(+)$1	1	153	160	13.9824
.))))))	chr7:127724724-127724979(+)$1	1	225	232	12.1403
)))).))	chr7:5569065-5569271(-)$1	1	117	124	13.9824
(.(((..	chr18:43669431-43669666(-)$1	1	66	73	16.9649
))))).)	chr1:201104631-201104898(-)$1	1	219	226	13.1929
.(((...	chr19:41265385-41265602(+)$1	1	72	79	16.9649
(((((((	chr11:64084459-64084719(-)$1	1	46	53	13.8070
)))))))	chr1:8922897-8923103(-)$1	1	184	191	13.1929
))).)))	chr17:73842931-73843166(-)$1	1	190	197	12.4035
(((...)	chr19:40330772-40331043(-)$1	1	13	20	13.8070
)))))))	chr16:56642450-56642696(+)$1	1	151	158	13.9824
.......	chr7:75686627-75686871(+)$1	1	138	145	12.4035
(((((((	chr7:75694019-75694289(+)$1	1	84	91	13.1052
(((...)	chr16:3715873-3716119(-)$1	1	155	162	12.8421
)))))))	chr6:10725121-10725347(+)$1	1	91	98	12.7543
((.((((	chr19:581405-581665(+)$1	1	112	119	13.8070
(.((((.	chr19:5894613-5894898(-)$1	1	113	120	13.9824
.((...(	chr19:13051271-13051522(+)$1	1	12	19	12.7543
(.((...	chr5:10262599-10262831(+)$1	1	183	190	13.1052
(((((.(	chr12:56555069-56555298(+)$1	1	124	131	13.8070
))))).)	chr10:73610838-73611063(-)$1	1	188	195	16.9649
((((.((	chr19:2269423-2269650(+)$1	1	4	11	12.7543
.((..((	chr15:76566658-76566936(-)$1	1	130	137	12.7543

#PSSM
G : 0.87	A : 0.05	C : 0.03	a : 0.01	g : 0.01	
G : 0.78	C : 0.07	U : 0.05	A : 0.05	g : 0.03	
C : 0.89	A : 0.03	c : 0.03	G : 0.01	U : 0.01	
U : 0.89	C : 0.03	u : 0.03	G : 0.01	A : 0.01	
G : 0.85	U : 0.05	C : 0.05	g : 0.03	
U : 0.71	G : 0.12	A : 0.10	C : 0.01	u : 0.01	g : 0.01	
G : 0.94	g : 0.03	C : 0.01	

#score	791.0350877192996
#seq	57
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_UTR_m1_run1.nuc.txt

#NT
AGGAGAA	chr5:179228202-179228434(-)$1	232	60	67	14.6250
AGAAGAG	chr16:89799687-89799963(+)$1	276	33	40	12.8750
AGGAGAA	chr7:150774389-150774655(-)$1	266	211	218	14.6250
GGGAGAG	chr1:40210945-40211322(+)$1	377	100	107	13.2500
aggaggg	chr13:79979967-79980233(-)$1	266	241	248	12.6250
aggugag	chr19:1808190-1808426(-)$1	236	204	211	13.3750
AGGAGAA	chr19:10468580-10468817(-)$1	237	1	8	14.6250
UGGAGAG	chr5:14678681-14678997(+)$1	316	164	171	13.2500
AGGAGAG	chr12:80180103-80180365(-)$1	262	62	69	17.1250
AGGAGAG	chr20:61438447-61438696(+)$1	249	88	95	17.1250
AGGUGAG	chr5:140048818-140049034(+)$1	216	13	20	13.3750
GGGAGAG	chr11:61188590-61188851(-)$1	261	30	37	13.2500
AGGAGAU	chr5:151170341-151170604(+)$1	263	246	253	14.3750
AGGAGAA	chr11:46404291-46404517(+)$1	226	16	23	14.6250
AGGAAAG	chr2:38804490-38804728(-)$1	238	58	65	12.3750
AGGAGAG	chr16:70588841-70589090(+)$1	249	237	244	17.1250
AGGAGAC	chr17:42478172-42478451(-)$1	279	44	51	14.3750
AGGAGAG	chr12:51393057-51393312(-)$1	255	188	195	17.1250
AGGUGAG	chr16:90106548-90106845(+)$1	297	116	123	13.3750
AGGAGAA	chr4:71686409-71686688(-)$1	279	11	18	14.6250
AGGAGAC	chr19:10505845-10506114(-)$1	269	158	165	14.3750
AGGUGAG	chr5:179050401-179050688(-)$1	287	50	57	13.3750
AGGAGAG	chr16:89348964-89349240(-)$1	276	87	94	17.1250
AGGAGAU	chr1:1190713-1190977(-)$1	264	108	115	14.3750
AGGAGAG	chr6:31931312-31931556(+)$1	244	127	134	17.1250
AGGAGAG	chr8:21849245-21849534(+)$1	289	131	138	17.1250
UGGAGAG	chr7:2583030-2583329(-)$1	299	45	52	13.2500
AGGAGAC	chr17:17717597-17717860(-)$1	263	134	141	14.3750
GGGAGAG	chr2:27884121-27884378(-)$1	257	129	136	13.2500
AGGAGAG	chr22:32002260-32002565(+)$1	305	186	193	17.1250
aggagau	chr14:39562281-39562553(-)$1	272	253	260	14.3750
AGGAGAG	chr8:21953693-21953983(+)$1	290	81	88	17.1250
AGAAGAG	chr3:183860517-183860772(+)$1	255	68	75	12.8750
AGAAGAG	chr1:202406838-202407117(+)$1	279	136	143	12.8750
AGGAGAU	chr11:5275359-5275646(-)$1	287	133	140	14.3750
AGGAGAC	chr11:65820046-65820286(+)$1	240	187	194	14.3750
UGGAGAG	chr19:1881855-1882114(-)$1	259	112	119	13.2500
AGGUGAG	chr17:28804397-28804690(+)$1	293	83	90	13.3750
AGGAGGG	chr7:158449246-158449502(-)$1	256	137	144	12.6250

#otherMatches

#Struct PSSM
nnnnbb:	chr15:74917164-74917464(+)$1	300	170	177	14.6250
eee333b	chr5:179228202-179228434(-)$1	232	60	67	14.6250
hhhhhhh	chr16:89799687-89799963(+)$1	276	33	40	12.8750
sssssss	chr7:150774389-150774655(-)$1	266	211	218	14.6250
=======	chr1:40210945-40211322(+)$1	377	100	107	13.2500
]bbcccD	chr13:79979967-79980233(-)$1	266	241	248	12.6250
!bb[eee	chr19:1808190-1808426(-)$1	236	204	211	13.3750
dddssss	chr19:10468580-10468817(-)$1	237	1	8	14.6250
g22hhhh	chr5:14678681-14678997(+)$1	316	164	171	13.2500
""iiiii	chr12:80180103-80180365(-)$1	262	62	69	17.1250
ccc:::c	chr20:61438447-61438696(+)$1	249	88	95	17.1250
eeeeppp	chr5:140048818-140049034(+)$1	216	13	20	13.3750
BB{CCC:	chr11:61188590-61188851(-)$1	261	30	37	13.2500
ddmmmmd	chr5:151170341-151170604(+)$1	263	246	253	14.3750
NDDDD::	chr11:46404291-46404517(+)$1	226	16	23	14.6250
fffff[d	chr2:38804490-38804728(-)$1	238	58	65	12.3750
ccc:::B	chr16:70588841-70589090(+)$1	249	237	244	17.1250
KEEEEE:	chr17:42478172-42478451(-)$1	279	44	51	14.3750
ZFFFFFF	chr12:51393057-51393312(-)$1	255	188	195	17.1250
ooooood	chr16:90106548-90106845(+)$1	297	116	123	13.3750
HHHH:::	chr4:71686409-71686688(-)$1	279	11	18	14.6250
"""ccc!	chr19:10505845-10506114(-)$1	269	158	165	14.3750
eeedddd	chr5:179050401-179050688(-)$1	287	50	57	13.3750
mmbbddd	chr16:89348964-89349240(-)$1	276	87	94	17.1250
mmdddd7	chr1:1190713-1190977(-)$1	264	108	115	14.3750
eee%%%%	chr6:31931312-31931556(+)$1	244	127	134	17.1250
nnnffff	chr8:21849245-21849534(+)$1	289	131	138	17.1250
GGGGG{A	chr7:2583030-2583329(-)$1	299	45	52	13.2500
ddd''''	chr17:17717597-17717860(-)$1	263	134	141	14.3750
d"""bbd	chr2:27884121-27884378(-)$1	257	129	136	13.2500
FFFFCCC	chr22:32002260-32002565(+)$1	305	186	193	17.1250
mmmmddd	chr14:39562281-39562553(-)$1	272	253	260	14.3750
ccc[hhh	chr8:21953693-21953983(+)$1	290	81	88	17.1250
=======	chr3:183860517-183860772(+)$1	255	68	75	12.8750
=======	chr1:202406838-202407117(+)$1	279	136	143	12.8750
eeee:::	chr11:5275359-5275646(-)$1	287	133	140	14.3750
lldddd>	chr11:65820046-65820286(+)$1	240	187	194	14.3750
lccciii	chr19:1881855-1882114(-)$1	259	112	119	13.2500
ccc:::d	chr17:28804397-28804690(+)$1	293	83	90	13.3750
gg[dddd	chr7:158449246-158449502(-)$1	256	137	144	12.6250

#DB
....)).	chr15:74917164-74917464(+)$1	1	170	177	14.6250
)))...)	chr5:179228202-179228434(-)$1	1	60	67	14.6250
)))))))	chr16:89799687-89799963(+)$1	1	33	40	12.8750
.......	chr7:150774389-150774655(-)$1	1	211	218	14.6250
)))))))	chr1:40210945-40211322(+)$1	1	100	107	13.2500
.))))))	chr13:79979967-79980233(-)$1	1	241	248	12.6250
.((.(((	chr19:1808190-1808426(-)$1	1	204	211	13.3750
(((....	chr19:10468580-10468817(-)$1	1	1	8	14.6250
)..))))	chr5:14678681-14678997(+)$1	1	164	171	13.2500
..(((((	chr12:80180103-80180365(-)$1	1	62	69	17.1250
)))...(	chr20:61438447-61438696(+)$1	1	88	95	17.1250
((((...	chr5:140048818-140049034(+)$1	1	13	20	13.3750
((.(((.	chr11:61188590-61188851(-)$1	1	30	37	13.2500
((....)	chr5:151170341-151170604(+)$1	1	246	253	14.3750
.((((..	chr11:46404291-46404517(+)$1	1	16	23	14.6250
(((((.(	chr2:38804490-38804728(-)$1	1	58	65	12.3750
)))...)	chr16:70588841-70589090(+)$1	1	237	244	17.1250
.(((((.	chr17:42478172-42478451(-)$1	1	44	51	14.3750
.))))))	chr12:51393057-51393312(-)$1	1	188	195	17.1250
......)	chr16:90106548-90106845(+)$1	1	116	123	13.3750
((((...	chr4:71686409-71686688(-)$1	1	11	18	14.6250
...(((.	chr19:10505845-10506114(-)$1	1	158	165	14.3750
)))))))	chr5:179050401-179050688(-)$1	1	50	57	13.3750
..))(((	chr16:89348964-89349240(-)$1	1	87	94	17.1250
..)))).	chr1:1190713-1190977(-)$1	1	108	115	14.3750
(((....	chr6:31931312-31931556(+)$1	1	127	134	17.1250
...))))	chr8:21849245-21849534(+)$1	1	131	138	17.1250
(((((.(	chr7:2583030-2583329(-)$1	1	45	52	13.2500
(((....	chr17:17717597-17717860(-)$1	1	134	141	14.3750
(...(((	chr2:27884121-27884378(-)$1	1	129	136	13.2500
)))))))	chr22:32002260-32002565(+)$1	1	186	193	17.1250
....)))	chr14:39562281-39562553(-)$1	1	253	260	14.3750
(((.(((	chr8:21953693-21953983(+)$1	1	81	88	17.1250
)))))))	chr3:183860517-183860772(+)$1	1	68	75	12.8750
)))))))	chr1:202406838-202407117(+)$1	1	136	143	12.8750
))))...	chr11:5275359-5275646(-)$1	1	133	140	14.3750
..)))).	chr11:65820046-65820286(+)$1	1	187	194	14.3750
.))))))	chr19:1881855-1882114(-)$1	1	112	119	13.2500
)))...(	chr17:28804397-28804690(+)$1	1	83	90	13.3750
((.((((	chr7:158449246-158449502(-)$1	1	137	144	12.6250

#PSSM
A : 0.77	G : 0.07	a : 0.07	U : 0.07	
G : 0.92	g : 0.07	
G : 0.85	A : 0.07	g : 0.07	
A : 0.82	U : 0.10	a : 0.05	u : 0.02	
G : 0.90	g : 0.07	A : 0.02	
A : 0.90	a : 0.05	g : 0.02	G : 0.02	
G : 0.60	A : 0.15	C : 0.10	U : 0.07	g : 0.05	u : 0.02	

#score	579.5000000000001
#seq	40
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_CDS_m1_run2.nuc.txt

#NT
GAGGGGG	chr17:37009226-37009434(-)$1	208	6	13	12.7142
GUGGGGG	chr17:7127405-7127660(+)$1	255	0	7	16.9999
GUGGCGG	chr12:117476878-117477187(-)$1	309	128	135	12.9999
GUGGGGA	chr19:1407569-1407878(+)$1	309	115	122	12.5714
CUGGGGG	chr6:33383629-33383934(+)$1	305	115	122	13.2857
CUGGGGG	chr10:104180922-104181225(+)$1	303	85	92	13.2857
GUAGGGG	chr11:67817869-67818147(+)$1	278	26	33	12.7142
UUGGGGG	chr7:934872-935120(+)$1	248	42	49	13.2142
GUGGGAG	chr17:79993818-79994098(-)$1	280	41	48	12.9999
GUCGGGG	chr17:79526315-79526540(-)$1	225	142	149	12.6428
AUGGGGG	chrM:14222-14443(-)$1	221	11	18	12.9285
CUGGGGG	chr19:18544940-18545222(+)$1	282	15	22	13.2857
GUGUGGG	chr1:150531382-150531623(+)$1	241	66	73	12.4285
GUUGGGG	chr1:12089605-12089925(+)$1	320	131	138	12.6428
GUGGGGG	chr11:639269-639549(+)$1	280	97	104	16.9999
GAGGGGG	chr16:89977515-89977774(+)$1	259	107	114	12.7142
GUGGUGG	chr16:31202251-31202498(+)$1	247	56	63	13.4285
UUGGGGG	chr22:50018406-50018666(-)$1	260	45	52	13.2142
UUGGGGG	chr1:1155930-1156230(-)$1	300	219	226	13.2142
GUGGCGG	chr11:639706-639991(+)$1	285	38	45	12.9999
GUGGGAG	chr1:156109470-156109770(+)$1	300	108	115	12.9999
GUAGGGG	chr21:45223340-45223615(+)$1	275	114	121	12.7142
GUAGGGG	chr19:50162936-50163186(-)$1	250	138	145	12.7142
GUGGGUG	chr19:18546275-18546521(-)$1	246	59	66	12.6428
gcggggg	chr19:10407083-10407366(+)$1	283	143	150	12.5714
UUGGGGG	chr19:1468354-1468632(-)$1	278	131	138	13.2142
guggggg	chr19:49611416-49611734(+)$1	318	150	157	16.9999
GUGGGGG	chr20:60884671-60884893(-)$1	222	144	151	16.9999
GUGGGGC	chr17:76109122-76109396(-)$1	274	0	7	12.5714
GUGAGGG	chr11:67379512-67379786(+)$1	274	113	120	12.5714
CUGGGGG	chr22:19711584-19711816(+)$1	232	222	229	13.2857
GUGGUGG	chr11:290841-291082(+)$1	241	101	108	13.4285
UUGGGGG	chrM:14366-14575(-)$1	209	37	44	13.2142
GUGAGGG	chr11:67379598-67379837(+)$1	239	27	34	12.5714
GUGGUGG	chr17:37009220-37009424(-)$1	204	69	76	13.4285
GUGGGGU	chrM:14201-14422(-)$1	221	27	34	12.5714
GUGGUGG	chr16:31202298-31202532(+)$1	234	9	16	13.4285
GUGGGCG	chr19:18547582-18547850(-)$1	268	68	75	12.6428
GUGGGGG	chr22:50016766-50017051(-)$1	285	143	150	16.9999
GUUGGGG	chr1:32827583-32827856(-)$1	273	100	107	12.6428
GUGGGGG	chr16:23700407-23700691(+)$1	284	174	181	16.9999
GUGGGAG	chr19:1227712-1228044(+)$1	332	124	131	12.9999
GUGGGGG	chr16:778841-779078(+)$1	237	84	91	16.9999
GUGAGGG	chr6:33259695-33260047(-)$1	352	98	105	12.5714
GUGGGGG	chr16:778878-779142(+)$1	264	47	54	16.9999
GUCGGGG	chr22:50873283-50873574(+)$1	291	68	75	12.6428
GUGGGAG	chr14:102515941-102516215(+)$1	274	30	37	12.9999
GUGGGGA	chr8:145106190-145106464(-)$1	274	10	17	12.5714
GAGGGGG	chr17:46628023-46628315(+)$1	292	34	41	12.7142
GUGGGAG	chr2:74689769-74690015(-)$1	246	14	21	12.9999
CUGGGGG	chr11:294058-294295(+)$1	237	3	10	13.2857
GUGGUGG	chr17:37009178-37009420(-)$1	242	65	72	13.4285
GUGGUGG	chrX:153195388-153195773(-)$1	385	239	246	13.4285
GUGGGGG	chr11:637327-637590(+)$1	263	91	98	16.9999
GUGGGGG	chr9:140005006-140005300(-)$1	294	175	182	16.9999
GUGGUGG	chrX:48652237-48652505(+)$1	268	97	104	13.4285
GCGGGGG	chr6:31937182-31937470(+)$1	288	198	205	12.5714
GUGGGAG	chr19:10406926-10407198(+)$1	272	15	22	12.9999
GUGGGGG	chr9:140005100-140005335(-)$1	235	210	217	16.9999
GUGGGGG	chr16:67862303-67862563(-)$1	260	204	211	16.9999
GUGGUGG	chr8:145617871-145618139(+)$1	268	69	76	13.4285
GUGGGGG	chr17:73823401-73823770(-)$1	369	99	106	16.9999
GUGGAGG	chr17:80443423-80443631(+)$1	208	82	89	12.9999
GUGGGGU	chr19:2425982-2426253(-)$1	271	91	98	12.5714
GUGGAGG	chr3:49052870-49053183(+)$1	313	164	171	12.9999
CUGGGGG	chr19:2270329-2270593(+)$1	264	189	196	13.2857
GUGCGGG	chr19:798402-798726(+)$1	324	133	140	12.4285
GAGGGGG	chr16:31201982-31202227(+)$1	245	154	161	12.7142
GUGGGGG	chr16:67862274-67862503(-)$1	229	144	151	16.9999

#otherMatches

#Struct PSSM
ffff]a]	chr16:722617-722845(+)$1	228	208	215	12.5714
=======	chr17:37009226-37009434(-)$1	208	6	13	12.7142
ggggggg	chr17:7127405-7127660(+)$1	255	0	7	16.9999
JJJJJJJ	chr12:117476878-117477187(-)$1	309	128	135	12.9999
HHHHHHH	chr19:1407569-1407878(+)$1	309	115	122	12.5714
2eeeeed	chr6:33383629-33383934(+)$1	305	115	122	13.2857
dd[iiii	chr10:104180922-104181225(+)$1	303	85	92	13.2857
DD:====	chr11:67817869-67818147(+)$1	278	26	33	12.7142
gggggee	chr7:934872-935120(+)$1	248	42	49	13.2142
======7	chr17:79993818-79994098(-)$1	280	41	48	12.9999
:::IIII	chr17:79526315-79526540(-)$1	225	142	149	12.6428
BKKFFFF	chrM:14222-14443(-)$1	221	11	18	12.9285
IIIeeee	chr19:18544940-18545222(+)$1	282	15	22	13.2857
ffff[a"	chr1:150531382-150531623(+)$1	241	66	73	12.4285
eeeeFFF	chr1:12089605-12089925(+)$1	320	131	138	12.6428
{IIIIII	chr11:639269-639549(+)$1	280	97	104	16.9999
eeeeddd	chr16:89977515-89977774(+)$1	259	107	114	12.7142
dd[eeee	chr16:31202251-31202498(+)$1	247	56	63	13.4285
pppppdd	chr22:50018406-50018666(-)$1	260	45	52	13.2142
!!ggggg	chr1:1155930-1156230(-)$1	300	219	226	13.2142
FFFF{EE	chr11:639706-639991(+)$1	285	38	45	12.9999
eee22bb	chr1:156109470-156109770(+)$1	300	108	115	12.9999
sssssss	chr21:45223340-45223615(+)$1	275	114	121	12.7142
CC{GGGG	chr19:50162936-50163186(-)$1	250	138	145	12.7142
]cccccc	chr19:18546275-18546521(-)$1	246	59	66	12.6428
]a55555	chr19:10407083-10407366(+)$1	283	143	150	12.5714
(((((gg	chr19:1468354-1468632(-)$1	278	131	138	13.2142
bb"""cc	chr19:49611416-49611734(+)$1	318	150	157	16.9999
iiiiiii	chr20:60884671-60884893(-)$1	222	144	151	16.9999
::FFFFF	chr17:76109122-76109396(-)$1	274	0	7	12.5714
mmmmddd	chr11:67379512-67379786(+)$1	274	113	120	12.5714
eeeeFFF	chr22:19711584-19711816(+)$1	232	222	229	13.2857
"""hhhh	chr11:290841-291082(+)$1	241	101	108	13.4285
iiiiiii	chrM:14366-14575(-)$1	209	37	44	13.2142
EEE{BBc	chr11:67379598-67379837(+)$1	239	27	34	12.5714
iiiiiFF	chr17:37009220-37009424(-)$1	204	69	76	13.4285
ff####a	chrM:14201-14422(-)$1	221	27	34	12.5714
[bbmmmm	chr16:31202298-31202532(+)$1	234	9	16	13.4285
cceeeee	chr19:18547582-18547850(-)$1	268	68	75	12.6428
ccggggg	chr22:50016766-50017051(-)$1	285	143	150	16.9999
55fffff	chr1:32827583-32827856(-)$1	273	100	107	12.6428
EFFFFFF	chr16:23700407-23700691(+)$1	284	174	181	16.9999
b]ccc]f	chr19:1227712-1228044(+)$1	332	124	131	12.9999
dddd]ii	chr16:778841-779078(+)$1	237	84	91	16.9999
pppppgg	chr6:33259695-33260047(-)$1	352	98	105	12.5714
dddd]ii	chr16:778878-779142(+)$1	264	47	54	16.9999
hhhhhhh	chr22:50873283-50873574(+)$1	291	68	75	12.6428
HHHHBBB	chr14:102515941-102516215(+)$1	274	30	37	12.9999
{A{HHHH	chr8:145106190-145106464(-)$1	274	10	17	12.5714
ddd!!a[	chr17:46628023-46628315(+)$1	292	34	41	12.7142
ooddddd	chr2:74689769-74690015(-)$1	246	14	21	12.9999
:FFFFFF	chr11:294058-294295(+)$1	237	3	10	13.2857
iiiii]b	chr17:37009178-37009420(-)$1	242	65	72	13.4285
A{GGGGG	chrX:153195388-153195773(-)$1	385	239	246	13.4285
=====[b	chr11:637327-637590(+)$1	263	91	98	16.9999
=======	chr9:140005006-140005300(-)$1	294	175	182	16.9999
]bb]ggg	chrX:48652237-48652505(+)$1	268	97	104	13.4285
dd[cccb	chr6:31937182-31937470(+)$1	288	198	205	12.5714
ddddddd	chr19:10406926-10407198(+)$1	272	15	22	12.9999
]ccc333	chr9:140005100-140005335(-)$1	235	210	217	16.9999
H}DDDDY	chr16:67862303-67862563(-)$1	260	204	211	16.9999
d[eeeee	chr8:145617871-145618139(+)$1	268	69	76	13.4285
f]=====	chr17:73823401-73823770(-)$1	369	99	106	16.9999
ffffffa	chr17:80443423-80443631(+)$1	208	82	89	12.9999
{CCCKKF	chr19:2425982-2426253(-)$1	271	91	98	12.5714
ccc!!cc	chr3:49052870-49053183(+)$1	313	164	171	12.9999
ggggggg	chr19:2270329-2270593(+)$1	264	189	196	13.2857
ooooooc	chr19:798402-798726(+)$1	324	133	140	12.4285
ooooccc	chr16:31201982-31202227(+)$1	245	154	161	12.7142
H}CCCdd	chr16:67862274-67862503(-)$1	229	144	151	16.9999

#DB
)))).).	chr16:722617-722845(+)$1	1	208	215	12.5714
(((((((	chr17:37009226-37009434(-)$1	1	6	13	12.7142
(((((((	chr17:7127405-7127660(+)$1	1	0	7	16.9999
(((((((	chr12:117476878-117477187(-)$1	1	128	135	12.9999
(((((((	chr19:1407569-1407878(+)$1	1	115	122	12.5714
.))))))	chr6:33383629-33383934(+)$1	1	115	122	13.2857
((.((((	chr10:104180922-104181225(+)$1	1	85	92	13.2857
((.((((	chr11:67817869-67818147(+)$1	1	26	33	12.7142
(((((((	chr7:934872-935120(+)$1	1	42	49	13.2142
)))))).	chr17:79993818-79994098(-)$1	1	41	48	12.9999
...))))	chr17:79526315-79526540(-)$1	1	142	149	12.6428
(..((((	chrM:14222-14443(-)$1	1	11	18	12.9285
(((((((	chr19:18544940-18545222(+)$1	1	15	22	13.2857
((((.(.	chr1:150531382-150531623(+)$1	1	66	73	12.4285
)))))))	chr1:12089605-12089925(+)$1	1	131	138	12.6428
.((((((	chr11:639269-639549(+)$1	1	97	104	16.9999
)))))))	chr16:89977515-89977774(+)$1	1	107	114	12.7142
((.((((	chr16:31202251-31202498(+)$1	1	56	63	13.4285
.....))	chr22:50018406-50018666(-)$1	1	45	52	13.2142
..(((((	chr1:1155930-1156230(-)$1	1	219	226	13.2142
((((.((	chr11:639706-639991(+)$1	1	38	45	12.9999
)))..))	chr1:156109470-156109770(+)$1	1	108	115	12.9999
.......	chr21:45223340-45223615(+)$1	1	114	121	12.7142
((.((((	chr19:50162936-50163186(-)$1	1	138	145	12.7142
.))))))	chr19:18546275-18546521(-)$1	1	59	66	12.6428
.).....	chr19:10407083-10407366(+)$1	1	143	150	12.5714
.....((	chr19:1468354-1468632(-)$1	1	131	138	13.2142
((...((	chr19:49611416-49611734(+)$1	1	150	157	16.9999
(((((((	chr20:60884671-60884893(-)$1	1	144	151	16.9999
..(((((	chr17:76109122-76109396(-)$1	1	0	7	12.5714
....)))	chr11:67379512-67379786(+)$1	1	113	120	12.5714
)))))))	chr22:19711584-19711816(+)$1	1	222	229	13.2857
...((((	chr11:290841-291082(+)$1	1	101	108	13.4285
(((((((	chrM:14366-14575(-)$1	1	37	44	13.2142
(((.(((	chr11:67379598-67379837(+)$1	1	27	34	12.5714
)))))((	chr17:37009220-37009424(-)$1	1	69	76	13.4285
((....(	chrM:14201-14422(-)$1	1	27	34	12.5714
.((....	chr16:31202298-31202532(+)$1	1	9	16	13.4285
)))))))	chr19:18547582-18547850(-)$1	1	68	75	12.6428
)))))))	chr22:50016766-50017051(-)$1	1	143	150	16.9999
..)))))	chr1:32827583-32827856(-)$1	1	100	107	12.6428
)))))))	chr16:23700407-23700691(+)$1	1	174	181	16.9999
).))).)	chr19:1227712-1228044(+)$1	1	124	131	12.9999
)))).))	chr16:778841-779078(+)$1	1	84	91	16.9999
.....))	chr6:33259695-33260047(-)$1	1	98	105	12.5714
)))).))	chr16:778878-779142(+)$1	1	47	54	16.9999
(((((((	chr22:50873283-50873574(+)$1	1	68	75	12.6428
(((((((	chr14:102515941-102516215(+)$1	1	30	37	12.9999
.(.((((	chr8:145106190-145106464(-)$1	1	10	17	12.5714
(((..(.	chr17:46628023-46628315(+)$1	1	34	41	12.7142
..))))(	chr2:74689769-74690015(-)$1	1	14	21	12.9999
.((((((	chr11:294058-294295(+)$1	1	3	10	13.2857
))))).)	chr17:37009178-37009420(-)$1	1	65	72	13.4285
(.(((((	chrX:153195388-153195773(-)$1	1	239	246	13.4285
(((((.(	chr11:637327-637590(+)$1	1	91	98	16.9999
(((((((	chr9:140005006-140005300(-)$1	1	175	182	16.9999
.)).)))	chrX:48652237-48652505(+)$1	1	97	104	13.4285
((.((((	chr6:31937182-31937470(+)$1	1	198	205	12.5714
(((((((	chr19:10406926-10407198(+)$1	1	15	22	12.9999
.)))...	chr9:140005100-140005335(-)$1	1	210	217	16.9999
).)))).	chr16:67862303-67862563(-)$1	1	204	211	16.9999
(.(((((	chr8:145617871-145618139(+)$1	1	69	76	13.4285
).)))))	chr17:73823401-73823770(-)$1	1	99	106	16.9999
))))))(	chr17:80443423-80443631(+)$1	1	82	89	12.9999
.(((..(	chr19:2425982-2426253(-)$1	1	91	98	12.5714
(((..((	chr3:49052870-49053183(+)$1	1	164	171	12.9999
(((((((	chr19:2270329-2270593(+)$1	1	189	196	13.2857
......)	chr19:798402-798726(+)$1	1	133	140	12.4285
....)))	chr16:31201982-31202227(+)$1	1	154	161	12.7142
).)))((	chr16:67862274-67862503(-)$1	1	144	151	16.9999

#PSSM
G : 0.79	C : 0.08	U : 0.07	g : 0.02	A : 0.01	
U : 0.89	A : 0.05	c : 0.01	u : 0.01	C : 0.01	
G : 0.87	A : 0.04	C : 0.02	U : 0.02	g : 0.02	
G : 0.89	A : 0.04	g : 0.02	U : 0.01	C : 0.01	
G : 0.79	U : 0.11	C : 0.02	g : 0.02	A : 0.02	
G : 0.85	A : 0.08	g : 0.02	U : 0.01	C : 0.01	
G : 0.88	C : 0.02	A : 0.02	g : 0.02	U : 0.02	

#score	962.1428571428563
#seq	70
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_CDS_m1_run1.nuc.txt

#NT
GACGCCAAUCGCGACGAGGCUUCGCCCCGUGGCGCGGUUUGAAAUUUUGCGGGGCUCAACGGCUCGCGGAGCGGCUACGCGGAGUGACAUCGCCGGUGUUUGCGGGUGGUUGUUGCUCUCGGGGCCGUGUGGAGUAGGUCUGGACCUGGACUCACGGCUGCUUGGAGCGUCCGCCAUGAGGAGAAGGUGCGGGUUGCGGGGAAAUCGAGGGGACGCGGGAGGGAGCGACGCUCGUUUCGGCUGCGGGGCCUGUUCAGGGGUGCGGGACCCGUGCGGGGUCCCGGG	chr15:91537536-91537823(-)$1	287	1	286	387.5000

#otherMatches

#Struct PSSM
eeeeeeeeeennnnneeeee]eeeee::::::cccrrrrrrrrrcccDDDDKKEEEEEKKGGGGGGGCCC::ffffff[bbpppppppbbffffff::::GGGGGGGeeeee[ccclllccc]eeeeeCCCKKEEEEEBB{DDDDKKBB{BB{CCCEEEEE{DDDDdddd[ccc!!a[bbqqqqqqqqbb]a22ccc]dddd:::::::ddddmmmmdddd::fffffflllffffffDDDD}EEEEE}CCC}BB}BBDDDD}BBYYEEEEEYYCCCGGGGGGG~	chr10:103912058-103912373(+)$1	315	0	285	387.5000
b[cccnnnnnccc]bb:::DDDD{BB{GGGGGGGKKDDDD{BB::hhhhhhhh[annnnna]hhhhhhhhcccmmmmccciiiiiiiiieeeee[bbmmmmbb]eeeee]iiiiiiiii:a[ggggggg[bb!!eeeeemmmmeeeee22bbggggggg]aBB}DDDDZZZGGGGGGG}BB}DDDDa[ffffffeeeee[dddd[dddd[a!!cccqqqqqqqqccc]a]dddddddd22eeeee22ffffff]a::::bb[hhhhhhhhnnnnnhhhhhhhh]b	chr15:91537536-91537823(-)$1	287	1	286	387.5000

#DB
((((((((((.....))))).)))))......(((.........)))((((..(((((..((((((((((..((((((.((.......))))))))....((((((((((((.(((...))).)))))(((..(((((((.((((..((.((.((((((((.((((((((.(((..(.((........)).)..))).)))).......((((....))))..((((((...)))))))))).))))).))).)).)))))).))..)))))..)))))))))).	chr10:103912058-103912373(+)$1	1	0	285	387.5000
(.(((.....))).))...((((.((.(((((((..((((.((..((((((((.(.....).))))))))(((....)))((((((((((((((.((....)).))))).))))))))).(.(((((((.((..(((((....)))))..))))))))).))).))))...))))))).)).))))(.(((((((((((.((((.((((.(..(((........))).).))))))))..)))))..)))))).)....((.((((((((.....)))))))).)	chr15:91537536-91537823(-)$1	1	1	286	387.5000

#PSSM
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
U : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	

#score	775.0
#seq	2
#width	285
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_CDS_m3_run1.nuc.txt

#NT
GCCC	chr2:172016766-172017024(-)$1	258	0	4	12.0000
GCCC	chr9:116930968-116931255(+)$1	287	6	10	12.0000
gccc	chr17:7416689-7416947(+)$1	258	127	131	12.0000
GCCC	chr15:56535305-56535578(-)$1	273	54	58	12.0000
GCCC	chr8:145065321-145065581(+)$1	260	141	145	12.0000
GCCC	chr7:73013883-73014119(-)$1	236	51	55	12.0000
GCCC	chr5:665957-666222(+)$1	265	19	23	12.0000
GCCC	chr19:36211769-36212012(+)$1	243	19	23	12.0000
GCCC	chr17:79972825-79973101(+)$1	276	40	44	12.0000
gccc	chr16:30748622-30748945(+)$1	323	104	108	12.0000
GCCC	chr12:57919424-57919676(+)$1	252	20	24	12.0000
GCCC	chr19:14203530-14203805(-)$1	275	36	40	12.0000
GCCC	chr4:2831209-2831480(+)$1	271	12	16	12.0000
GCCC	chr21:45879937-45880190(+)$1	253	62	66	12.0000
GCCC	chrX:152957489-152957726(+)$1	237	109	113	12.0000
GCCC	chr17:7751305-7751583(+)$1	278	66	70	12.0000
gccc	chr17:7417214-7417493(+)$1	279	106	110	12.0000
GCCC	chr14:105173848-105174118(+)$1	270	63	67	12.0000
gccc	chr17:48746075-48746319(+)$1	244	32	36	12.0000
GCCC	chr7:1028332-1028577(+)$1	245	23	27	12.0000
GCCC	chr9:140115418-140115693(-)$1	275	31	35	12.0000
GCCC	chr19:46393968-46394216(-)$1	248	107	111	12.0000
GCCC	chr19:16940357-16940707(+)$1	350	9	13	12.0000
GCCC	chr11:60899155-60899454(-)$1	299	63	67	12.0000
GCCC	chr12:7045611-7045869(+)$1	258	33	37	12.0000
gccc	chr16:28834437-28834703(+)$1	266	35	39	12.0000
GCCC	chr11:8661895-8662170(-)$1	275	167	171	12.0000
GCCC	chr9:116930636-116930917(+)$1	281	30	34	12.0000
GCCC	chr5:31526539-31526855(-)$1	316	17	21	12.0000
GCCC	chr8:22432282-22432528(+)$1	246	35	39	12.0000
GCCC	chr17:79826180-79826423(-)$1	243	26	30	12.0000
gccc	chr1:171526836-171527108(+)$1	272	19	23	12.0000
GCCC	chr19:2248274-2248555(+)$1	281	1	5	12.0000
GCCC	chr19:15355130-15355407(-)$1	277	29	33	12.0000
GCCC	chr5:31526449-31526727(-)$1	278	125	129	12.0000
GCCC	chr22:51019866-51020170(-)$1	304	55	59	12.0000
gccc	chr17:7417010-7417274(+)$1	264	49	53	12.0000
GCCC	chr8:145065493-145065747(+)$1	254	15	19	12.0000
GCCC	chr3:47452428-47452701(+)$1	273	19	23	12.0000
GCCC	chr11:61048205-61048519(-)$1	314	18	22	12.0000
GCCC	chr11:118769486-118769736(-)$1	250	57	61	12.0000
GCCC	chr9:126144059-126144421(-)$1	362	21	25	12.0000
GCCC	chr7:73011732-73011971(-)$1	239	5	9	12.0000
GCCC	chr19:39876025-39876319(+)$1	294	136	140	12.0000
GCCC	chr3:47452030-47452271(+)$1	241	11	15	12.0000
gccc	chrX:129147814-129148068(+)$1	254	4	8	12.0000
GCCC	chr3:47458973-47459237(-)$1	264	25	29	12.0000
GCCC	chr14:55529691-55529991(+)$1	300	140	144	12.0000
GCCC	chr19:2248125-2248433(+)$1	308	42	46	12.0000
GCCC	chr3:47452084-47452380(+)$1	296	45	49	12.0000
GCCC	chr19:2247967-2248265(+)$1	298	1	5	12.0000
GCCC	chr12:111800572-111800914(-)$1	342	1	5	12.0000
GCCC	chr19:7935461-7935730(-)$1	269	0	4	12.0000
GCCC	chr3:48461515-48461804(-)$1	289	105	109	12.0000
GCCC	chr1:33236670-33236921(+)$1	251	30	34	12.0000
GCCC	chr19:45898776-45899074(-)$1	298	67	71	12.0000
GCCC	chr11:61183552-61183825(-)$1	273	84	88	12.0000
GCCC	chr1:33236505-33236844(+)$1	339	11	15	12.0000
GCCC	chr17:40947162-40947441(+)$1	279	2	6	12.0000
GCCC	chr6:110423033-110423337(-)$1	304	156	160	12.0000
gccc	chr20:2816670-2816938(-)$1	268	126	130	12.0000
GCCC	chr19:2248368-2248634(+)$1	266	104	108	12.0000
GCCC	chr2:242163227-242163467(+)$1	240	4	8	12.0000
gccc	chr20:42176536-42176859(+)$1	323	158	162	12.0000
GCCC	chr14:21538901-21539145(+)$1	244	56	60	12.0000
GCCC	chr22:20937029-20937297(+)$1	268	38	42	12.0000
GCCC	chr19:15350637-15350897(-)$1	260	31	35	12.0000
GCCC	chr2:242756716-242756994(+)$1	278	92	96	12.0000
GCCC	chr12:7045390-7045649(+)$1	259	3	7	12.0000
GCCC	chr2:172016835-172017095(-)$1	260	71	75	12.0000
gccc	chr19:36211439-36211703(+)$1	264	37	41	12.0000
GCCC	chr11:722506-722789(+)$1	283	37	41	12.0000
gccc	chr20:3776985-3777321(+)$1	336	10	14	12.0000
GCCC	chr19:15353851-15354090(-)$1	239	27	31	12.0000
gccc	chr1:171526908-171527235(+)$1	327	1	5	12.0000
gccc	chr17:7417074-7417340(+)$1	266	6	10	12.0000
Gccc	chr17:19285337-19285623(+)$1	286	4	8	12.0000
GCCC	chr9:116930481-116930794(+)$1	313	146	150	12.0000
GCCC	chr12:57111145-57111421(-)$1	276	6	10	12.0000
GCCC	chr7:4829665-4829963(+)$1	298	4	8	12.0000
GCCC	chr19:2247801-2248074(+)$1	273	25	29	12.0000
GCCC	chr16:28878086-28878330(+)$1	244	112	116	12.0000
GCCC	chr9:116945201-116945417(+)$1	216	50	54	12.0000
GCCC	chr12:56558123-56558412(-)$1	289	133	137	12.0000
GCCC	chr2:204305008-204305267(-)$1	259	57	61	12.0000
GCCC	chr17:7751102-7751358(+)$1	256	41	45	12.0000
GCCC	chr16:30734839-30735095(+)$1	256	70	74	12.0000
GCCC	chr2:71159720-71160005(+)$1	285	74	78	12.0000
GCCC	chr7:73010943-73011194(-)$1	251	32	36	12.0000
gccc	chr17:36896527-36896799(-)$1	272	12	16	12.0000
GCCC	chr16:30735027-30735323(+)$1	296	62	66	12.0000
GCCC	chr7:75052148-75052405(-)$1	257	24	28	12.0000
GCCC	chr20:32250169-32250421(-)$1	252	97	101	12.0000
GCCC	chr5:175956959-175957206(-)$1	247	61	65	12.0000

#otherMatches

#Struct PSSM
CCMM	chr19:48197406-48197692(+)$1	286	28	32	12.0000
:::E	chr2:172016766-172017024(-)$1	258	0	4	12.0000
::::	chr9:116930968-116931255(+)$1	287	6	10	12.0000
::::	chr17:7416689-7416947(+)$1	258	127	131	12.0000
EEKK	chr15:56535305-56535578(-)$1	273	54	58	12.0000
gfff	chr8:145065321-145065581(+)$1	260	141	145	12.0000
DDDD	chr7:73013883-73014119(-)$1	236	51	55	12.0000
::::	chr5:665957-666222(+)$1	265	19	23	12.0000
d!!a	chr19:36211769-36212012(+)$1	243	19	23	12.0000
nddd	chr17:79972825-79973101(+)$1	276	40	44	12.0000
c(((	chr16:30748622-30748945(+)$1	323	104	108	12.0000
KEEE	chr12:57919424-57919676(+)$1	252	20	24	12.0000
++++	chr19:14203530-14203805(-)$1	275	36	40	12.0000
GGGG	chr4:2831209-2831480(+)$1	271	12	16	12.0000
rrrr	chr21:45879937-45880190(+)$1	253	62	66	12.0000
:bb[	chrX:152957489-152957726(+)$1	237	109	113	12.0000
BBLL	chr17:7751305-7751583(+)$1	278	66	70	12.0000
^^^^	chr17:7417214-7417493(+)$1	279	106	110	12.0000
dd::	chr14:105173848-105174118(+)$1	270	63	67	12.0000
HHHH	chr17:48746075-48746319(+)$1	244	32	36	12.0000
dd:d	chr7:1028332-1028577(+)$1	245	23	27	12.0000
e:::	chr9:140115418-140115693(-)$1	275	31	35	12.0000
b!!a	chr19:46393968-46394216(-)$1	248	107	111	12.0000
fqqq	chr19:16940357-16940707(+)$1	350	9	13	12.0000
JSSS	chr11:60899155-60899454(-)$1	299	63	67	12.0000
HH::	chr12:7045611-7045869(+)$1	258	33	37	12.0000
gg::	chr16:28834437-28834703(+)$1	266	35	39	12.0000
mmmc	chr11:8661895-8662170(-)$1	275	167	171	12.0000
:ggg	chr9:116930636-116930917(+)$1	281	30	34	12.0000
::::	chr5:31526539-31526855(-)$1	316	17	21	12.0000
bb[b	chr8:22432282-22432528(+)$1	246	35	39	12.0000
DDKK	chr17:79826180-79826423(-)$1	243	26	30	12.0000
qqqq	chr1:171526836-171527108(+)$1	272	19	23	12.0000
cc""	chr19:2248274-2248555(+)$1	281	1	5	12.0000
dd""	chr19:15355130-15355407(-)$1	277	29	33	12.0000
::::	chr5:31526449-31526727(-)$1	278	125	129	12.0000
c###	chr22:51019866-51020170(-)$1	304	55	59	12.0000
qqqq	chr17:7417010-7417274(+)$1	264	49	53	12.0000
GGGG	chr8:145065493-145065747(+)$1	254	15	19	12.0000
csss	chr3:47452428-47452701(+)$1	273	19	23	12.0000
BBBB	chr11:61048205-61048519(-)$1	314	18	22	12.0000
""bb	chr11:118769486-118769736(-)$1	250	57	61	12.0000
mmag	chr9:126144059-126144421(-)$1	362	21	25	12.0000
EEE:	chr7:73011732-73011971(-)$1	239	5	9	12.0000
HHHD	chr19:39876025-39876319(+)$1	294	136	140	12.0000
ddBB	chr3:47452030-47452271(+)$1	241	11	15	12.0000
::::	chrX:129147814-129148068(+)$1	254	4	8	12.0000
%%%c	chr3:47458973-47459237(-)$1	264	25	29	12.0000
eeee	chr14:55529691-55529991(+)$1	300	140	144	12.0000
EEEE	chr19:2248125-2248433(+)$1	308	42	46	12.0000
f:::	chr3:47452084-47452380(+)$1	296	45	49	12.0000
cc##	chr19:2247967-2248265(+)$1	298	1	5	12.0000
EEEE	chr12:111800572-111800914(-)$1	342	1	5	12.0000
CCC:	chr19:7935461-7935730(-)$1	269	0	4	12.0000
::::	chr3:48461515-48461804(-)$1	289	105	109	12.0000
e!!a	chr1:33236670-33236921(+)$1	251	30	34	12.0000
nnnn	chr19:45898776-45899074(-)$1	298	67	71	12.0000
E:::	chr11:61183552-61183825(-)$1	273	84	88	12.0000
eeoo	chr1:33236505-33236844(+)$1	339	11	15	12.0000
CLLL	chr17:40947162-40947441(+)$1	279	2	6	12.0000
IIII	chr6:110423033-110423337(-)$1	304	156	160	12.0000
cc::	chr20:2816670-2816938(-)$1	268	126	130	12.0000
>>>>	chr19:2248368-2248634(+)$1	266	104	108	12.0000
EAEE	chr2:242163227-242163467(+)$1	240	4	8	12.0000
dddd	chr20:42176536-42176859(+)$1	323	158	162	12.0000
JJJJ	chr14:21538901-21539145(+)$1	244	56	60	12.0000
ccdd	chr22:20937029-20937297(+)$1	268	38	42	12.0000
dddd	chr19:15350637-15350897(-)$1	260	31	35	12.0000
b%%%	chr2:242756716-242756994(+)$1	278	92	96	12.0000
DD::	chr12:7045390-7045649(+)$1	259	3	7	12.0000
cc[f	chr2:172016835-172017095(-)$1	260	71	75	12.0000
DD::	chr19:36211439-36211703(+)$1	264	37	41	12.0000
FFFF	chr11:722506-722789(+)$1	283	37	41	12.0000
ddd:	chr20:3776985-3777321(+)$1	336	10	14	12.0000
ccss	chr19:15353851-15354090(-)$1	239	27	31	12.0000
::::	chr1:171526908-171527235(+)$1	327	1	5	12.0000
pppp	chr17:7417074-7417340(+)$1	266	6	10	12.0000
DD{C	chr17:19285337-19285623(+)$1	286	4	8	12.0000
bbll	chr9:116930481-116930794(+)$1	313	146	150	12.0000
MMMM	chr12:57111145-57111421(-)$1	276	6	10	12.0000
d%%%	chr7:4829665-4829963(+)$1	298	4	8	12.0000
eddd	chr19:2247801-2248074(+)$1	273	25	29	12.0000
ffff	chr16:28878086-28878330(+)$1	244	112	116	12.0000
ccc]	chr9:116945201-116945417(+)$1	216	50	54	12.0000
ggg!	chr12:56558123-56558412(-)$1	289	133	137	12.0000
::::	chr2:204305008-204305267(-)$1	259	57	61	12.0000
ccc!	chr17:7751102-7751358(+)$1	256	41	45	12.0000
pppp	chr16:30734839-30735095(+)$1	256	70	74	12.0000
bbtt	chr2:71159720-71160005(+)$1	285	74	78	12.0000
oeee	chr7:73010943-73011194(-)$1	251	32	36	12.0000
"""c	chr17:36896527-36896799(-)$1	272	12	16	12.0000
cccq	chr16:30735027-30735323(+)$1	296	62	66	12.0000
WWWW	chr7:75052148-75052405(-)$1	257	24	28	12.0000
vvvv	chr20:32250169-32250421(-)$1	252	97	101	12.0000
dd44	chr5:175956959-175957206(-)$1	247	61	65	12.0000

#DB
((..	chr19:48197406-48197692(+)$1	1	28	32	12.0000
...(	chr2:172016766-172017024(-)$1	1	0	4	12.0000
....	chr9:116930968-116931255(+)$1	1	6	10	12.0000
....	chr17:7416689-7416947(+)$1	1	127	131	12.0000
((..	chr15:56535305-56535578(-)$1	1	54	58	12.0000
))))	chr8:145065321-145065581(+)$1	1	141	145	12.0000
((((	chr7:73013883-73014119(-)$1	1	51	55	12.0000
....	chr5:665957-666222(+)$1	1	19	23	12.0000
(..(	chr19:36211769-36212012(+)$1	1	19	23	12.0000
.)))	chr17:79972825-79973101(+)$1	1	40	44	12.0000
(...	chr16:30748622-30748945(+)$1	1	104	108	12.0000
.(((	chr12:57919424-57919676(+)$1	1	20	24	12.0000
....	chr19:14203530-14203805(-)$1	1	36	40	12.0000
((((	chr4:2831209-2831480(+)$1	1	12	16	12.0000
....	chr21:45879937-45880190(+)$1	1	62	66	12.0000
.((.	chrX:152957489-152957726(+)$1	1	109	113	12.0000
((..	chr17:7751305-7751583(+)$1	1	66	70	12.0000
....	chr17:7417214-7417493(+)$1	1	106	110	12.0000
))..	chr14:105173848-105174118(+)$1	1	63	67	12.0000
((((	chr17:48746075-48746319(+)$1	1	32	36	12.0000
)).(	chr7:1028332-1028577(+)$1	1	23	27	12.0000
)...	chr9:140115418-140115693(-)$1	1	31	35	12.0000
(..(	chr19:46393968-46394216(-)$1	1	107	111	12.0000
(...	chr19:16940357-16940707(+)$1	1	9	13	12.0000
(...	chr11:60899155-60899454(-)$1	1	63	67	12.0000
((..	chr12:7045611-7045869(+)$1	1	33	37	12.0000
))..	chr16:28834437-28834703(+)$1	1	35	39	12.0000
...)	chr11:8661895-8662170(-)$1	1	167	171	12.0000
.(((	chr9:116930636-116930917(+)$1	1	30	34	12.0000
....	chr5:31526539-31526855(-)$1	1	17	21	12.0000
((.(	chr8:22432282-22432528(+)$1	1	35	39	12.0000
((..	chr17:79826180-79826423(-)$1	1	26	30	12.0000
....	chr1:171526836-171527108(+)$1	1	19	23	12.0000
((..	chr19:2248274-2248555(+)$1	1	1	5	12.0000
((..	chr19:15355130-15355407(-)$1	1	29	33	12.0000
....	chr5:31526449-31526727(-)$1	1	125	129	12.0000
(...	chr22:51019866-51020170(-)$1	1	55	59	12.0000
....	chr17:7417010-7417274(+)$1	1	49	53	12.0000
((((	chr8:145065493-145065747(+)$1	1	15	19	12.0000
(...	chr3:47452428-47452701(+)$1	1	19	23	12.0000
((((	chr11:61048205-61048519(-)$1	1	18	22	12.0000
..((	chr11:118769486-118769736(-)$1	1	57	61	12.0000
..))	chr9:126144059-126144421(-)$1	1	21	25	12.0000
(((.	chr7:73011732-73011971(-)$1	1	5	9	12.0000
((((	chr19:39876025-39876319(+)$1	1	136	140	12.0000
))((	chr3:47452030-47452271(+)$1	1	11	15	12.0000
....	chrX:129147814-129148068(+)$1	1	4	8	12.0000
...(	chr3:47458973-47459237(-)$1	1	25	29	12.0000
))))	chr14:55529691-55529991(+)$1	1	140	144	12.0000
((((	chr19:2248125-2248433(+)$1	1	42	46	12.0000
)...	chr3:47452084-47452380(+)$1	1	45	49	12.0000
((..	chr19:2247967-2248265(+)$1	1	1	5	12.0000
((((	chr12:111800572-111800914(-)$1	1	1	5	12.0000
(((.	chr19:7935461-7935730(-)$1	1	0	4	12.0000
....	chr3:48461515-48461804(-)$1	1	105	109	12.0000
(..(	chr1:33236670-33236921(+)$1	1	30	34	12.0000
....	chr19:45898776-45899074(-)$1	1	67	71	12.0000
(...	chr11:61183552-61183825(-)$1	1	84	88	12.0000
((..	chr1:33236505-33236844(+)$1	1	11	15	12.0000
(...	chr17:40947162-40947441(+)$1	1	2	6	12.0000
((((	chr6:110423033-110423337(-)$1	1	156	160	12.0000
))..	chr20:2816670-2816938(-)$1	1	126	130	12.0000
....	chr19:2248368-2248634(+)$1	1	104	108	12.0000
((((	chr2:242163227-242163467(+)$1	1	4	8	12.0000
((((	chr20:42176536-42176859(+)$1	1	158	162	12.0000
((((	chr14:21538901-21539145(+)$1	1	56	60	12.0000
))))	chr22:20937029-20937297(+)$1	1	38	42	12.0000
))))	chr19:15350637-15350897(-)$1	1	31	35	12.0000
(...	chr2:242756716-242756994(+)$1	1	92	96	12.0000
((..	chr12:7045390-7045649(+)$1	1	3	7	12.0000
((.(	chr2:172016835-172017095(-)$1	1	71	75	12.0000
((..	chr19:36211439-36211703(+)$1	1	37	41	12.0000
((((	chr11:722506-722789(+)$1	1	37	41	12.0000
))).	chr20:3776985-3777321(+)$1	1	10	14	12.0000
((..	chr19:15353851-15354090(-)$1	1	27	31	12.0000
....	chr1:171526908-171527235(+)$1	1	1	5	12.0000
....	chr17:7417074-7417340(+)$1	1	6	10	12.0000
((.(	chr17:19285337-19285623(+)$1	1	4	8	12.0000
((..	chr9:116930481-116930794(+)$1	1	146	150	12.0000
....	chr12:57111145-57111421(-)$1	1	6	10	12.0000
(...	chr7:4829665-4829963(+)$1	1	4	8	12.0000
)(((	chr19:2247801-2248074(+)$1	1	25	29	12.0000
))))	chr16:28878086-28878330(+)$1	1	112	116	12.0000
))).	chr9:116945201-116945417(+)$1	1	50	54	12.0000
(((.	chr12:56558123-56558412(-)$1	1	133	137	12.0000
....	chr2:204305008-204305267(-)$1	1	57	61	12.0000
(((.	chr17:7751102-7751358(+)$1	1	41	45	12.0000
....	chr16:30734839-30735095(+)$1	1	70	74	12.0000
((..	chr2:71159720-71160005(+)$1	1	74	78	12.0000
.)))	chr7:73010943-73011194(-)$1	1	32	36	12.0000
...(	chr17:36896527-36896799(-)$1	1	12	16	12.0000
(((.	chr16:30735027-30735323(+)$1	1	62	66	12.0000
....	chr7:75052148-75052405(-)$1	1	24	28	12.0000
....	chr20:32250169-32250421(-)$1	1	97	101	12.0000
))..	chr5:175956959-175957206(-)$1	1	61	65	12.0000

#PSSM
G : 0.84	g : 0.15	
C : 0.83	c : 0.16	
C : 0.83	c : 0.16	
C : 0.83	c : 0.16	

#score	1140.0000000000002
#seq	95
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_transcript_m1_run1.nuc.txt

#NT
CCGAGGAAgccccgccccgcgcagccccgucccgccccUUCCCAUCGUGUACGGUCCCGCGUGGCUGCGCGCGGCGCUCUGGGAGUACGACAUGGCGCGCGAGCUGCGGGCGCUGCUGCUGUGGGGCCGCCGCCUGCGGCCUUUGCUGCGGGCGCCGGCGCUGGCGGCCGUGCCGGGAGGUGAGGGCGUCCUGGCUGGACGGGCAGCGGGCGGGCCGGGCCACGGAGACGGCAGGGACGUCCCUGUGCUCCGGGGAGCGAGGCGCCGGCACCUGCUUCACAGGCGUGGGAGGUCCGGCGAGGCCAAGCGCGGCAGACGCGU	chr16:3767279-3767620(-)$1	341	20	341	495.5000

#otherMatches

#Struct PSSM
:BBLLLCCCLLLDDDD::bbcccnnnnnccc]bb::GGGGGGG{IIIIIIIII::a[cccooooooccc]a:::cccooooooccc:IIIIIIIII}GGGGGGG}DDDDZZZCCCZZZBBggggggg[eeeee!!dddd[ccc[eeeee[ggggggg[dddd[accc[a[eeeee!!bb[bb[a[eeeeellleeeee]a]bb]bb22eeeee]a]ccc4444a]dddd]ggggggg]eeeee]cccdddd4444eeeee22ggggggg::::::==============[cccddddbbdddd[a[bb[ddddmmmmdddd	chr9:126030503-126030863(-)$1	360	2	323	495.5000
H{AKKEEEEELLLCCCKKDDDD{BBDDDD{GGGGGGG:::eeeee"""cccddddeeeee!!dddd[ffffff[bb"""bboooooobb333bb]ffffffddddeeeee]dddd]ccc]eeeeedddd[==========mmmm==========]dddddddd[a[accc[ggggggg[bbmmmmbb]gggggggccc]a]a]ddddGGGGGGG}DDDDbb[eeeee[bb[eeeeemmmmeeeeebbeeeeebb::BBZZZDDDD}CCC~~~~EEEEE}A}HHHHHHHH}CCCYYDDDDYYBB:::eeeeennnnneeeee	chr16:3767279-3767620(-)$1	341	20	341	495.5000

#DB
.((...(((...((((..(((((.....))).))..(((((((.(((((((((..(.(((......))).)...(((......))).))))))))).))))))).))))...)))...))(((((((.(((((..((((.(((.(((((.(((((((.((((.((((.(.(((((..((.((.(.(((((...))))).).)).))..))))).).)))....).)))).))))))).))))).)))))))....)))))..)))))))......((((((((((((((.(((((((((((((.(.((.((((....))))	chr9:126030503-126030863(-)$1	1	2	323	495.5000
(.(..(((((...(((..((((.((((((.(((((((...(((((...((((((((((((..((((.((((((.((...((......))...)).))))))))))))))).)))).))).)))))((((.((((((((((....)))))))))).))))((((.(.((((.(((((((.((....)).)))))))))).).).))))))))))).))))((.(((((.((.(((((....))))))))))))))..))...)))).)))....))))).).)))))))).)))..))))..))...(((((.....)))))	chr16:3767279-3767620(-)$1	1	20	341	495.5000

#PSSM
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
c : 0.50	A : 0.50	
c : 0.50	A : 0.50	
g : 1.00	
g : 0.50	c : 0.50	
a : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 1.00	
c : 0.50	g : 0.50	
g : 0.50	c : 0.50	
c : 1.00	
g : 0.50	c : 0.50	
a : 0.50	c : 0.50	
g : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
c : 0.50	a : 0.50	
a : 0.50	g : 0.50	
c : 1.00	
c : 1.00	
a : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
g : 0.50	u : 0.50	
c : 1.00	
a : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 0.50	g : 0.50	
a : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
g : 0.50	U : 0.50	
c : 0.50	U : 0.50	
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	U : 0.50	
c : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
c : 0.50	U : 0.50	
g : 0.50	A : 0.50	
c : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	
u : 0.50	C : 0.50	
g : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	U : 0.50	
a : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	A : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
g : 0.50	C : 0.50	
g : 0.50	A : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
u : 0.50	U : 0.50	
a : 0.50	G : 0.50	
c : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	U : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
u : 0.50	G : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	A : 0.50	
u : 0.50	G : 0.50	
u : 0.50	C : 0.50	
a : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
u : 0.50	G : 0.50	
u : 0.50	A : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	A : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	A : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	

#score	991.0
#seq	2
#width	321
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_transcript_m3_run1.nuc.txt

#NT
auauuuuguuaaggaguuuugcaucuaugcucaugagagauauguuugucguuuuccuuucuucuaguacauuuuucugguuuugguauuaggauaaugcuggcuucaucacgugaauuaguaaguguuccuuuugcuucuguuuucuggaagagauuguagagaauugguauuucauucucaaauguuuaguagaauucacccuagagcccaucugugcaugaugcuuuuuauuuuugaagauuauuaacuuuugguuccauuucuuuaguauauauggauccauucacgucauuuauugcuccuuauguaaguuuuu	chr14:31447147-31447498(-)$1	351	27	346	419.5000

#otherMatches

#Struct PSSM
::::::::eeeee[a[iiiiiiiii[eeeee####ffffff!!eeeeeccc!!cccoooooocccccc]eeeee55555ffffff333eeeee333iiiiiiiii]a22eeeee:::::::FFFFFFDDDDMMMMCCCdddd[eeeee[a!!eeeee[bbhhhhhhhh[ffffff[ccc[ccc[eeeee[ddddoooooodddd]eeeee999999999ccc]ccc]ffffff22hhhhhhhh333bb]eeeee22aeeeeedddd::::::::::::::::::::gggggggooooooggggggg::CCCYYDDDD::	chr7:34729537-34729961(-)$1	424	103	422	419.5000
B{DDDDLLLHHHHHHHH:::EEEEE{DDDD{BB{BB::ddddmmmmdddd:::::::==========[ccc+++++++++++++dddd!!dddd!!bbeeeee[eeeeellleeeeeeeeee22bb22dddd22dddd22ccc333==========:::::ffffff[bbmmmmbbffffff::::dddd!!cccqqqqqqqqcccdddd:::BBBB}DDDDEEEEEffffffmmmmffffff:::::::::::ccc[eeeeevvvvvvvvvvvvveeeee]ccc:::::::::::::::HHHHHHHHZZZDDDD}BB}	chr14:31447147-31447498(-)$1	351	27	346	419.5000

#DB
........(((((.(.(((((((((.(((((....((((((..((((((((..(((......)))))).))))).....))))))...)))))...))))))))).)..))))).......))))))((((....(((((((.(((((.(..(((((.((((((((((.((((((.(((.(((.(((((.((((......)))).))))).........))).))).))))))..))))))))...)).)))))..))))))))))....................(((((((......)))))))..)))..))))..	chr7:34729537-34729961(-)$1	1	103	422	419.5000
(.((((...((((((((...(((((.((((.((.((..((((....)))).......((((((((((.(((.............((((..((((..(((((((.(((((...))))))))))..))..))))..))))..)))...)))))))))).....((((((.((....))))))))....((((..(((........)))))))...)))).)))))))))((((((....))))))...........(((.(((((.............))))).)))...............))))))))...)))).)).	chr14:31447147-31447498(-)$1	1	27	346	419.5000

#PSSM
c : 0.50	a : 0.50	
u : 1.00	
u : 0.50	a : 0.50	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 0.50	g : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
c : 0.50	a : 0.50	
a : 1.00	
u : 0.50	g : 0.50	
c : 0.50	g : 0.50	
u : 0.50	a : 0.50	
g : 1.00	
a : 0.50	u : 0.50	
g : 0.50	u : 0.50	
g : 0.50	u : 0.50	
a : 0.50	u : 0.50	
g : 1.00	
a : 0.50	c : 0.50	
u : 0.50	a : 0.50	
g : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 0.50	u : 0.50	
u : 0.50	a : 0.50	
a : 0.50	u : 0.50	
u : 0.50	g : 0.50	
a : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 0.50	c : 0.50	
u : 0.50	a : 0.50	
u : 1.00	
a : 0.50	g : 0.50	
u : 0.50	a : 0.50	
g : 1.00	
u : 0.50	a : 0.50	
u : 0.50	g : 0.50	
g : 0.50	a : 0.50	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
a : 0.50	g : 0.50	
a : 0.50	u : 0.50	
g : 0.50	u : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
c : 0.50	u : 0.50	
c : 1.00	
u : 0.50	g : 0.50	
u : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
g : 0.50	u : 0.50	
a : 0.50	c : 0.50	
u : 0.50	c : 0.50	
u : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
g : 0.50	c : 0.50	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
g : 1.00	
g : 0.50	u : 0.50	
u : 0.50	a : 0.50	
g : 0.50	c : 0.50	
c : 0.50	a : 0.50	
u : 1.00	
u : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
a : 0.50	u : 0.50	
g : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
g : 1.00	
c : 0.50	u : 0.50	
a : 0.50	u : 0.50	
a : 0.50	u : 0.50	
c : 0.50	u : 0.50	
g : 1.00	
a : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	a : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
g : 0.50	a : 0.50	
u : 0.50	g : 0.50	
a : 0.50	g : 0.50	
u : 0.50	a : 0.50	
a : 0.50	u : 0.50	
a : 1.00	
g : 0.50	a : 0.50	
c : 0.50	u : 0.50	
g : 1.00	
u : 0.50	c : 0.50	
u : 1.00	
u : 0.50	g : 0.50	
c : 0.50	g : 0.50	
u : 0.50	c : 0.50	
u : 1.00	
g : 0.50	u : 0.50	
g : 0.50	c : 0.50	
u : 0.50	a : 0.50	
a : 0.50	u : 0.50	
a : 0.50	c : 0.50	
u : 0.50	a : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
a : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
c : 0.50	u : 0.50	
u : 0.50	a : 0.50	
u : 0.50	g : 0.50	
u : 1.00	
g : 0.50	a : 0.50	
u : 0.50	a : 0.50	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
g : 0.50	u : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
u : 1.00	
u : 1.00	
c : 0.50	g : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
a : 0.50	u : 0.50	
a : 0.50	c : 0.50	
a : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
g : 0.50	u : 0.50	
g : 0.50	c : 0.50	
u : 1.00	
u : 0.50	g : 0.50	
g : 1.00	
u : 0.50	a : 0.50	
a : 1.00	
g : 1.00	
u : 0.50	a : 0.50	
a : 0.50	g : 0.50	
g : 0.50	a : 0.50	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
u : 0.50	g : 0.50	
a : 1.00	
c : 0.50	g : 0.50	
u : 0.50	a : 0.50	
g : 0.50	a : 0.50	
g : 0.50	u : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
a : 0.50	g : 0.50	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
g : 0.50	u : 0.50	
a : 0.50	u : 0.50	
g : 0.50	c : 0.50	
g : 0.50	a : 0.50	
a : 0.50	u : 0.50	
g : 0.50	u : 0.50	
g : 0.50	c : 0.50	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 0.50	a : 0.50	
a : 1.00	
c : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
c : 0.50	a : 0.50	
c : 0.50	g : 0.50	
u : 1.00	
a : 1.00	
u : 0.50	g : 0.50	
a : 1.00	
a : 1.00	
g : 0.50	u : 0.50	
g : 0.50	u : 0.50	
c : 1.00	
u : 0.50	a : 0.50	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
u : 1.00	
g : 0.50	a : 0.50	
g : 1.00	
c : 0.50	a : 0.50	
a : 0.50	g : 0.50	
g : 0.50	c : 0.50	
a : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	a : 0.50	
u : 1.00	
c : 1.00	
u : 1.00	
c : 0.50	g : 0.50	
a : 0.50	u : 0.50	
g : 1.00	
g : 0.50	c : 0.50	
a : 1.00	
g : 0.50	u : 0.50	
g : 1.00	
c : 0.50	a : 0.50	
u : 1.00	
u : 0.50	g : 0.50	
a : 0.50	c : 0.50	
u : 1.00	
u : 1.00	
a : 0.50	u : 0.50	
c : 0.50	u : 0.50	
a : 0.50	u : 0.50	
u : 0.50	a : 0.50	
u : 1.00	
u : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
a : 0.50	g : 0.50	
g : 0.50	a : 0.50	
u : 0.50	a : 0.50	
g : 1.00	
c : 0.50	a : 0.50	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	a : 0.50	
g : 0.50	u : 0.50	
c : 0.50	u : 0.50	
a : 1.00	
g : 0.50	a : 0.50	
u : 0.50	c : 0.50	
u : 1.00	
a : 0.50	u : 0.50	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
c : 0.50	g : 0.50	
a : 0.50	u : 0.50	
u : 1.00	
c : 1.00	
a : 0.50	c : 0.50	
g : 0.50	a : 0.50	
a : 0.50	u : 0.50	
u : 1.00	
u : 1.00	
u : 0.50	c : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
u : 1.00	
u : 0.50	a : 0.50	
u : 0.50	g : 0.50	
c : 0.50	u : 0.50	
u : 0.50	a : 0.50	
u : 1.00	
u : 0.50	a : 0.50	
u : 1.00	
c : 0.50	a : 0.50	
c : 0.50	u : 0.50	
u : 0.50	g : 0.50	
u : 0.50	g : 0.50	
u : 0.50	a : 0.50	
u : 1.00	
u : 0.50	c : 0.50	
u : 0.50	c : 0.50	
u : 0.50	a : 0.50	
u : 1.00	
u : 1.00	
u : 0.50	c : 0.50	
u : 0.50	a : 0.50	
u : 0.50	c : 0.50	
u : 0.50	g : 0.50	
a : 0.50	u : 0.50	
a : 0.50	c : 0.50	
u : 0.50	a : 0.50	
u : 1.00	
u : 1.00	
u : 1.00	
u : 0.50	a : 0.50	
u : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
a : 0.50	c : 0.50	
g : 0.50	u : 0.50	
a : 0.50	c : 0.50	
g : 0.50	c : 0.50	
a : 0.50	u : 0.50	
c : 0.50	u : 0.50	
a : 1.00	
g : 0.50	u : 0.50	
g : 1.00	
g : 0.50	u : 0.50	
u : 0.50	a : 0.50	
c : 0.50	a : 0.50	
c : 0.50	g : 0.50	
c : 0.50	u : 0.50	
a : 0.50	u : 0.50	
c : 0.50	u : 0.50	
u : 1.00	
u : 1.00	

#score	839.0
#seq	2
#width	319
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_UTR_m1_run1.nuc.txt

#NT
CCCAG	chr12:117468338-117468639(+)$1	301	10	15	14.9999
CCCAG	chr6:38121364-38121709(+)$1	345	179	184	14.9999
cccag	chr1:19542567-19542833(-)$1	266	125	130	14.9999
cccag	chr1:36067660-36067875(-)$1	215	84	89	14.9999
cccag	chr5:174956156-174956473(+)$1	317	66	71	14.9999
cccag	chrX:53263356-53263619(-)$1	263	13	18	14.9999
cccag	chr1:19585490-19585752(+)$1	262	13	18	14.9999
CCCAG	chr19:4360722-4360981(-)$1	259	125	130	14.9999
cccag	chr22:41996048-41996284(-)$1	236	124	129	14.9999
CCCAG	chr17:40556459-40556708(-)$1	249	140	145	14.9999
CCCAG	chr3:14713450-14713725(+)$1	275	245	250	14.9999
CCCAG	chr7:588768-589073(-)$1	305	116	121	14.9999
CCCAG	chr19:19223355-19223604(+)$1	249	0	5	14.9999
CCCAG	chr16:29822053-29822341(+)$1	288	268	273	14.9999
CCCAG	chr1:36806945-36807190(-)$1	245	175	180	14.9999
CCCAG	chr3:39138205-39138532(-)$1	327	79	84	14.9999
CCCAG	chr22:22051755-22052061(+)$1	306	276	281	14.9999
CCCAG	chr19:7977411-7977644(+)$1	233	205	210	14.9999
CCCAG	chr17:40176007-40176242(+)$1	235	34	39	14.9999
cccag	chr19:39358889-39359175(-)$1	286	91	96	14.9999
CCCAG	chr11:66044063-66044309(+)$1	246	66	71	14.9999
CCCAG	chr19:13251441-13251683(+)$1	242	84	89	14.9999
CCCAG	chr11:47186616-47186892(-)$1	276	201	206	14.9999
CCCAG	chr17:47126691-47126970(+)$1	279	53	58	14.9999
CCCAG	chr1:6694984-6695254(-)$1	270	116	121	14.9999
CCCAG	chr1:12071693-12071915(+)$1	222	50	55	14.9999
CCCAG	chr2:131131424-131131669(+)$1	245	232	237	14.9999
CCCAG	chr7:935311-935575(+)$1	264	173	178	14.9999
cccag	chr2:99812840-99813089(+)$1	249	13	18	14.9999
CCCAG	chr3:39138418-39138736(-)$1	318	283	288	14.9999
CCCAG	chr7:2291791-2292090(-)$1	299	76	81	14.9999
cccag	chr11:767672-767951(-)$1	279	5	10	14.9999
cccag	chr19:6379900-6380183(-)$1	283	44	49	14.9999
cccag	chr12:133297974-133298236(+)$1	262	87	92	14.9999
cccag	chr17:76106405-76106645(-)$1	240	113	118	14.9999
CCCAG	chr19:1854027-1854320(-)$1	293	125	130	14.9999
CCCAG	chr2:219139609-219139900(-)$1	291	135	140	14.9999
CCCAG	chr22:39128920-39129213(+)$1	293	168	173	14.9999
cccag	chr1:160967738-160968011(-)$1	273	78	83	14.9999
CCCAG	chr22:41642106-41642384(-)$1	278	1	6	14.9999
cccag	chr2:47130421-47130676(-)$1	255	113	118	14.9999
cccag	chr4:2940159-2940429(-)$1	270	221	226	14.9999
CCCAG	chr22:43563725-43564089(-)$1	364	192	197	14.9999
CCCAG	chr3:39138655-39138901(-)$1	246	49	54	14.9999
CCCAG	chr16:2508168-2508418(+)$1	250	77	82	14.9999
CCCAG	chr14:23441271-23441659(-)$1	388	39	44	14.9999
CCCAG	chr5:140895485-140895806(-)$1	321	26	31	14.9999
CCCAG	chr1:154929544-154929796(-)$1	252	8	13	14.9999
cccag	chr11:769227-769483(-)$1	256	27	32	14.9999
CCCAG	chr1:160184198-160184461(+)$1	263	129	134	14.9999
CCCAG	chr3:49758001-49758253(-)$1	252	83	88	14.9999
CCCAG	chr17:2593166-2593436(-)$1	270	17	22	14.9999
CCCAG	chr5:175955584-175955842(-)$1	258	163	168	14.9999
CCCAG	chr19:6414429-6414696(-)$1	267	87	92	14.9999
cccag	chr1:38327383-38327652(-)$1	269	85	90	14.9999
CCCAG	chr15:74701810-74702055(-)$1	245	132	137	14.9999
cccag	chr9:133579727-133580016(+)$1	289	72	77	14.9999
CCCAG	chr12:133298905-133299244(+)$1	339	260	265	14.9999
CCCAG	chr3:48556290-48556550(-)$1	260	70	75	14.9999
CCCAG	chr16:2648395-2648645(+)$1	250	174	179	14.9999
CCCAG	chr11:67022742-67022988(+)$1	246	146	151	14.9999
CCCAG	chr7:4804567-4804911(+)$1	344	336	341	14.9999
CCCAG	chr11:62392650-62392958(-)$1	308	8	13	14.9999
CCCAG	chr6:38121106-38121338(+)$1	232	118	123	14.9999
CCCAG	chr9:136229347-136229717(-)$1	370	139	144	14.9999
cccag	chr16:29679562-29679818(+)$1	256	106	111	14.9999
CCCAG	chr9:140176070-140176347(+)$1	277	0	5	14.9999

#otherMatches

#Struct PSSM
B{DDD	chr1:17734331-17734633(-)$1	302	50	55	14.9999
wwwww	chr12:117468338-117468639(+)$1	301	10	15	14.9999
fffff	chr6:38121364-38121709(+)$1	345	179	184	14.9999
fffff	chr1:19542567-19542833(-)$1	266	125	130	14.9999
FFFFF	chr1:36067660-36067875(-)$1	215	84	89	14.9999
dddqq	chr5:174956156-174956473(+)$1	317	66	71	14.9999
:::::	chrX:53263356-53263619(-)$1	263	13	18	14.9999
mcccb	chr1:19585490-19585752(+)$1	262	13	18	14.9999
ooood	chr19:4360722-4360981(-)$1	259	125	130	14.9999
eeeee	chr22:41996048-41996284(-)$1	236	124	129	14.9999
qqqbb	chr17:40556459-40556708(-)$1	249	140	145	14.9999
mmmmg	chr3:14713450-14713725(+)$1	275	245	250	14.9999
f]bbc	chr7:588768-589073(-)$1	305	116	121	14.9999
cccmm	chr19:19223355-19223604(+)$1	249	0	5	14.9999
ZBB}E	chr16:29822053-29822341(+)$1	288	268	273	14.9999
rrrrr	chr1:36806945-36807190(-)$1	245	175	180	14.9999
a]ggg	chr3:39138205-39138532(-)$1	327	79	84	14.9999
glllg	chr22:22051755-22052061(+)$1	306	276	281	14.9999
emmmm	chr19:7977411-7977644(+)$1	233	205	210	14.9999
c333b	chr17:40176007-40176242(+)$1	235	34	39	14.9999
!!bb[	chr19:39358889-39359175(-)$1	286	91	96	14.9999
cgggg	chr11:66044063-66044309(+)$1	246	66	71	14.9999
666ee	chr19:13251441-13251683(+)$1	242	84	89	14.9999
ggooo	chr11:47186616-47186892(-)$1	276	201	206	14.9999
JJJJJ	chr17:47126691-47126970(+)$1	279	53	58	14.9999
ccc77	chr1:6694984-6695254(-)$1	270	116	121	14.9999
ppbb]	chr1:12071693-12071915(+)$1	222	50	55	14.9999
::JJJ	chr2:131131424-131131669(+)$1	245	232	237	14.9999
EEEYY	chr7:935311-935575(+)$1	264	173	178	14.9999
c!!ee	chr2:99812840-99813089(+)$1	249	13	18	14.9999
a]ggg	chr3:39138418-39138736(-)$1	318	283	288	14.9999
55ddd	chr7:2291791-2292090(-)$1	299	76	81	14.9999
::::B	chr11:767672-767951(-)$1	279	5	10	14.9999
nneee	chr19:6379900-6380183(-)$1	283	44	49	14.9999
dffff	chr12:133297974-133298236(+)$1	262	87	92	14.9999
b22ee	chr17:76106405-76106645(-)$1	240	113	118	14.9999
ddd33	chr19:1854027-1854320(-)$1	293	125	130	14.9999
::::g	chr2:219139609-219139900(-)$1	291	135	140	14.9999
::::d	chr22:39128920-39129213(+)$1	293	168	173	14.9999
6dddd	chr1:160967738-160968011(-)$1	273	78	83	14.9999
baggg	chr22:41642106-41642384(-)$1	278	1	6	14.9999
:ffff	chr2:47130421-47130676(-)$1	255	113	118	14.9999
cc]==	chr4:2940159-2940429(-)$1	270	221	226	14.9999
dd22d	chr22:43563725-43564089(-)$1	364	192	197	14.9999
hhhhh	chr3:39138655-39138901(-)$1	246	49	54	14.9999
EEEEE	chr16:2508168-2508418(+)$1	250	77	82	14.9999
b]hhh	chr14:23441271-23441659(-)$1	388	39	44	14.9999
dmmmm	chr5:140895485-140895806(-)$1	321	26	31	14.9999
"""ee	chr1:154929544-154929796(-)$1	252	8	13	14.9999
DDa!!	chr11:769227-769483(-)$1	256	27	32	14.9999
::::b	chr1:160184198-160184461(+)$1	263	129	134	14.9999
fffff	chr3:49758001-49758253(-)$1	252	83	88	14.9999
GGGGG	chr17:2593166-2593436(-)$1	270	17	22	14.9999
iiiiB	chr5:175955584-175955842(-)$1	258	163	168	14.9999
ddddb	chr19:6414429-6414696(-)$1	267	87	92	14.9999
hhhhh	chr1:38327383-38327652(-)$1	269	85	90	14.9999
]hhhh	chr15:74701810-74702055(-)$1	245	132	137	14.9999
fffff	chr9:133579727-133580016(+)$1	289	72	77	14.9999
FFFFF	chr12:133298905-133299244(+)$1	339	260	265	14.9999
fff%%	chr3:48556290-48556550(-)$1	260	70	75	14.9999
fffff	chr16:2648395-2648645(+)$1	250	174	179	14.9999
ddddd	chr11:67022742-67022988(+)$1	246	146	151	14.9999
c:CCC	chr7:4804567-4804911(+)$1	344	336	341	14.9999
nnnnd	chr11:62392650-62392958(-)$1	308	8	13	14.9999
nnnnd	chr6:38121106-38121338(+)$1	232	118	123	14.9999
ff::b	chr9:136229347-136229717(-)$1	370	139	144	14.9999
d[hhh	chr16:29679562-29679818(+)$1	256	106	111	14.9999
::iii	chr9:140176070-140176347(+)$1	277	0	5	14.9999

#DB
(.(((	chr1:17734331-17734633(-)$1	1	50	55	14.9999
.....	chr12:117468338-117468639(+)$1	1	10	15	14.9999
)))))	chr6:38121364-38121709(+)$1	1	179	184	14.9999
(((((	chr1:19542567-19542833(-)$1	1	125	130	14.9999
(((((	chr1:36067660-36067875(-)$1	1	84	89	14.9999
(((..	chr5:174956156-174956473(+)$1	1	66	71	14.9999
.....	chrX:53263356-53263619(-)$1	1	13	18	14.9999
.))))	chr1:19585490-19585752(+)$1	1	13	18	14.9999
....)	chr19:4360722-4360981(-)$1	1	125	130	14.9999
)))))	chr22:41996048-41996284(-)$1	1	124	129	14.9999
...))	chr17:40556459-40556708(-)$1	1	140	145	14.9999
....)	chr3:14713450-14713725(+)$1	1	245	250	14.9999
).)))	chr7:588768-589073(-)$1	1	116	121	14.9999
(((..	chr19:19223355-19223604(+)$1	1	0	5	14.9999
.)).)	chr16:29822053-29822341(+)$1	1	268	273	14.9999
.....	chr1:36806945-36807190(-)$1	1	175	180	14.9999
).)))	chr3:39138205-39138532(-)$1	1	79	84	14.9999
(...)	chr22:22051755-22052061(+)$1	1	276	281	14.9999
(....	chr19:7977411-7977644(+)$1	1	205	210	14.9999
)...)	chr17:40176007-40176242(+)$1	1	34	39	14.9999
..((.	chr19:39358889-39359175(-)$1	1	91	96	14.9999
)))))	chr11:66044063-66044309(+)$1	1	66	71	14.9999
...))	chr19:13251441-13251683(+)$1	1	84	89	14.9999
((...	chr11:47186616-47186892(-)$1	1	201	206	14.9999
(((((	chr17:47126691-47126970(+)$1	1	53	58	14.9999
)))..	chr1:6694984-6695254(-)$1	1	116	121	14.9999
..)).	chr1:12071693-12071915(+)$1	1	50	55	14.9999
..)))	chr2:131131424-131131669(+)$1	1	232	237	14.9999
)))..	chr7:935311-935575(+)$1	1	173	178	14.9999
(..((	chr2:99812840-99813089(+)$1	1	13	18	14.9999
).)))	chr3:39138418-39138736(-)$1	1	283	288	14.9999
..)))	chr7:2291791-2292090(-)$1	1	76	81	14.9999
....(	chr11:767672-767951(-)$1	1	5	10	14.9999
..)))	chr19:6379900-6380183(-)$1	1	44	49	14.9999
(((((	chr12:133297974-133298236(+)$1	1	87	92	14.9999
)..))	chr17:76106405-76106645(-)$1	1	113	118	14.9999
)))..	chr19:1854027-1854320(-)$1	1	125	130	14.9999
....(	chr2:219139609-219139900(-)$1	1	135	140	14.9999
....(	chr22:39128920-39129213(+)$1	1	168	173	14.9999
.))))	chr1:160967738-160968011(-)$1	1	78	83	14.9999
(((((	chr22:41642106-41642384(-)$1	1	1	6	14.9999
.((((	chr2:47130421-47130676(-)$1	1	113	118	14.9999
)).))	chr4:2940159-2940429(-)$1	1	221	226	14.9999
))..)	chr22:43563725-43564089(-)$1	1	192	197	14.9999
(((((	chr3:39138655-39138901(-)$1	1	49	54	14.9999
(((((	chr16:2508168-2508418(+)$1	1	77	82	14.9999
).)))	chr14:23441271-23441659(-)$1	1	39	44	14.9999
(....	chr5:140895485-140895806(-)$1	1	26	31	14.9999
...((	chr1:154929544-154929796(-)$1	1	8	13	14.9999
(((..	chr11:769227-769483(-)$1	1	27	32	14.9999
....(	chr1:160184198-160184461(+)$1	1	129	134	14.9999
(((((	chr3:49758001-49758253(-)$1	1	83	88	14.9999
(((((	chr17:2593166-2593436(-)$1	1	17	22	14.9999
)))))	chr5:175955584-175955842(-)$1	1	163	168	14.9999
)))))	chr19:6414429-6414696(-)$1	1	87	92	14.9999
)))))	chr1:38327383-38327652(-)$1	1	85	90	14.9999
.))))	chr15:74701810-74702055(-)$1	1	132	137	14.9999
(((((	chr9:133579727-133580016(+)$1	1	72	77	14.9999
)))))	chr12:133298905-133299244(+)$1	1	260	265	14.9999
(((..	chr3:48556290-48556550(-)$1	1	70	75	14.9999
)))))	chr16:2648395-2648645(+)$1	1	174	179	14.9999
)))))	chr11:67022742-67022988(+)$1	1	146	151	14.9999
).)))	chr7:4804567-4804911(+)$1	1	336	341	14.9999
....)	chr11:62392650-62392958(-)$1	1	8	13	14.9999
....)	chr6:38121106-38121338(+)$1	1	118	123	14.9999
))..(	chr9:136229347-136229717(-)$1	1	139	144	14.9999
(.(((	chr16:29679562-29679818(+)$1	1	106	111	14.9999
..(((	chr9:140176070-140176347(+)$1	1	0	5	14.9999

#PSSM
C : 0.72	c : 0.27	
C : 0.72	c : 0.27	
C : 0.72	c : 0.27	
A : 0.72	a : 0.27	
G : 0.72	g : 0.27	

#score	1019.9999999999995
#seq	68
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_transcript_m1_run1.nuc.txt

#NT
GGUUUUU	chr12:56119133-56119368(-)$1	235	76	83	12.7692
UGAUUUU	chr2:61272783-61273070(+)$1	287	132	139	12.9999
UGUUCUU	chr6:30551920-30552189(+)$1	269	82	89	12.7692
UCUUUUU	chr17:80544611-80544868(+)$1	257	189	196	13.3076
UGUUUUU	chr4:79202475-79202687(+)$1	212	34	41	17.0769
UGUUUUA	chr8:48696216-48696471(-)$1	255	38	45	12.8461
UUUUUUU	chr20:46284837-46285081(+)$1	244	32	39	13.6153
UGUUCUU	chr5:126889448-126889721(+)$1	273	223	230	12.7692
UGUAUUU	chr12:123782486-123782748(-)$1	262	5	12	12.7692
UGUUAUU	chr7:103301869-103302074(-)$1	205	34	41	12.6923
uauuuuu	chr16:3241944-3242147(+)$1	203	123	130	13.6153
UGUUUUU	chr8:141856604-141856865(-)$1	261	62	69	17.0769
UGUUUUG	chr2:231742066-231742349(+)$1	283	38	45	12.9999
uguuugu	chr6:132175366-132175642(+)$1	276	58	65	12.6153
UGUUUCU	chr5:179143033-179143258(+)$1	225	60	67	12.6923
UGUUUUC	chr2:47707860-47708111(+)$1	251	161	168	12.8461
UGUUAUU	chr2:128890671-128890918(+)$1	247	28	35	12.6923
UAUUUUU	chr5:1318274-1318533(-)$1	259	99	106	13.6153
UGUUUUU	chr1:156343573-156343822(+)$1	249	127	134	17.0769
UGUUCUU	chr20:21314100-21314354(+)$1	254	70	77	12.7692
UUUUUUU	chr6:86243328-86243613(-)$1	285	84	91	13.6153
UUUUUUU	chr10:11567283-11567491(-)$1	208	3	10	13.6153
UGUUUUU	chr9:74299649-74299933(-)$1	284	108	115	17.0769
GGUUUUU	chr1:207940257-207940468(+)$1	211	201	208	12.7692
AGUUUUU	chr12:53691550-53691809(+)$1	259	55	62	12.6923
UGUAUUU	chr8:38934724-38934961(+)$1	237	70	77	12.7692
CGUUUUU	chr9:4711543-4711802(-)$1	259	221	228	12.6153
UGUGUUU	chr6:160494193-160494421(+)$1	228	19	26	12.5384
UGUUUUU	chr5:141380791-141381076(-)$1	285	224	231	17.0769
UGUUUUU	chr2:128950041-128950282(+)$1	241	136	143	17.0769
uuuuuuu	chr2:47554965-47555218(-)$1	253	180	187	13.6153
UGUUUUU	chr8:57892511-57892855(-)$1	344	85	92	17.0769
UGUUUUU	chr3:186303040-186303305(+)$1	265	231	238	17.0769
UGAUUUU	chr6:160448172-160448444(+)$1	272	34	41	12.9999
UUUUUUU	chr12:9258766-9258981(-)$1	215	21	28	13.6153
UGUUUUG	chr11:1774333-1774582(-)$1	249	0	7	12.9999
UGUUUCU	chr12:1881911-1882174(+)$1	263	74	81	12.6923
UGCUUUU	chr10:1086226-1086598(-)$1	372	85	92	12.7692
UGUUUUC	chr21:18931191-18931462(+)$1	271	87	94	12.8461
UGUUUUU	chr15:69072171-69072410(-)$1	239	32	39	17.0769
UGUUUUG	chr15:58919798-58920040(-)$1	242	132	139	12.9999
UGUUUGU	chrX:99890585-99890834(-)$1	249	63	70	12.6153
UGUUUUA	chr10:98286869-98287091(-)$1	222	32	39	12.8461
UGUUUUU	chr11:22777330-22777599(+)$1	269	194	201	17.0769
UUUUUUU	chr8:38940120-38940342(+)$1	222	23	30	13.6153
UAUUUUU	chr3:57562941-57563166(-)$1	225	57	64	13.6153
GGUUUUU	chr17:45247194-45247442(-)$1	248	0	7	12.7692
UGUUUUU	chr1:116930651-116930857(+)$1	206	16	23	17.0769
UGUAUUU	chr19:51835520-51835789(-)$1	269	116	123	12.7692
UGUUGUU	chr17:53362962-53363228(+)$1	266	225	232	12.6153
UGUUUUU	chr3:145841824-145842035(-)$1	211	162	169	17.0769
UGUUUUG	chr3:133483648-133483851(+)$1	203	149	156	12.9999
UGAUUUU	chrX:153275894-153276158(-)$1	264	102	109	12.9999
UGUUUUU	chr11:35313863-35314137(-)$1	274	45	52	17.0769
UGAUUUU	chr3:49823165-49823444(-)$1	279	47	54	12.9999
UCUUUUU	chr15:59189245-59189493(-)$1	248	186	193	13.3076
UGUAUUU	chr10:105360951-105361193(-)$1	242	86	93	12.7692
AGUUUUU	chr19:1981000-1981299(+)$1	299	225	232	12.6923
UGUUUCU	chr1:55316788-55317026(-)$1	238	97	104	12.6923
UGAUUUU	chr5:74016365-74016610(+)$1	245	231	238	12.9999
UAUUUUU	chr2:242445647-242445914(-)$1	267	21	28	13.6153
UGUUUUU	chr2:21231010-21231243(-)$1	233	34	41	17.0769
UAUUUUU	chr4:155530802-155531015(-)$1	213	31	38	13.6153
UGCUUUU	chr3:185364026-185364298(-)$1	272	32	39	12.7692

#otherMatches

#Struct PSSM
:::::::	chr6:29913144-29913363(+)$1	219	68	75	13.6153
cc+++++	chr12:56119133-56119368(-)$1	235	76	83	12.7692
llhhhhh	chr2:61272783-61273070(+)$1	287	132	139	12.9999
c[fffff	chr6:30551920-30552189(+)$1	269	82	89	12.7692
ggggggb	chr17:80544611-80544868(+)$1	257	189	196	13.3076
JJJJJJ:	chr4:79202475-79202687(+)$1	212	34	41	17.0769
:DDDDLL	chr8:48696216-48696471(-)$1	255	38	45	12.8461
]dddd::	chr20:46284837-46285081(+)$1	244	32	39	13.6153
ppppppp	chr5:126889448-126889721(+)$1	273	223	230	12.7692
:::::CC	chr12:123782486-123782748(-)$1	262	5	12	12.7692
::::::d	chr7:103301869-103302074(-)$1	205	34	41	12.6923
eemmmme	chr16:3241944-3242147(+)$1	203	123	130	13.6153
=======	chr8:141856604-141856865(-)$1	261	62	69	17.0769
dqqqqqq	chr2:231742066-231742349(+)$1	283	38	45	12.9999
bbggggg	chr6:132175366-132175642(+)$1	276	58	65	12.6153
:::::::	chr5:179143033-179143258(+)$1	225	60	67	12.6923
dddmmmm	chr2:47707860-47708111(+)$1	251	161	168	12.8461
f"""fff	chr2:128890671-128890918(+)$1	247	28	35	12.6923
2dddd22	chr5:1318274-1318533(-)$1	259	99	106	13.6153
=======	chr1:156343573-156343822(+)$1	249	127	134	17.0769
dddda[c	chr20:21314100-21314354(+)$1	254	70	77	12.7692
mmmmbb]	chr6:86243328-86243613(-)$1	285	84	91	13.6153
fff!!dd	chr10:11567283-11567491(-)$1	208	3	10	13.6153
bccc]dd	chr9:74299649-74299933(-)$1	284	108	115	17.0769
HH:::::	chr1:207940257-207940468(+)$1	211	201	208	12.7692
DDKKHHH	chr12:53691550-53691809(+)$1	259	55	62	12.6923
{EEEEEN	chr8:38934724-38934961(+)$1	237	70	77	12.7692
:HHHHHH	chr9:4711543-4711802(-)$1	259	221	228	12.6153
VVVVVVV	chr6:160494193-160494421(+)$1	228	19	26	12.5384
:::::::	chr5:141380791-141381076(-)$1	285	224	231	17.0769
>>>iiii	chr2:128950041-128950282(+)$1	241	136	143	17.0769
eeeee::	chr2:47554965-47555218(-)$1	253	180	187	13.6153
ggggggg	chr8:57892511-57892855(-)$1	344	85	92	17.0769
>>>ffff	chr3:186303040-186303305(+)$1	265	231	238	17.0769
d55555e	chr6:160448172-160448444(+)$1	272	34	41	12.9999
ooooooc	chr12:9258766-9258981(-)$1	215	21	28	13.6153
:::::::	chr11:1774333-1774582(-)$1	249	0	7	12.9999
ee::ggg	chr12:1881911-1882174(+)$1	263	74	81	12.6923
dssssss	chr10:1086226-1086598(-)$1	372	85	92	12.7692
gggggbb	chr21:18931191-18931462(+)$1	271	87	94	12.8461
:::hhhh	chr15:69072171-69072410(-)$1	239	32	39	17.0769
b]ddddB	chr15:58919798-58920040(-)$1	242	132	139	12.9999
eee::bb	chrX:99890585-99890834(-)$1	249	63	70	12.6153
]ffffff	chr10:98286869-98287091(-)$1	222	32	39	12.8461
GGGGG~~	chr11:22777330-22777599(+)$1	269	194	201	17.0769
dd[eeee	chr8:38940120-38940342(+)$1	222	23	30	13.6153
::=====	chr3:57562941-57563166(-)$1	225	57	64	13.6153
GGGGGGG	chr17:45247194-45247442(-)$1	248	0	7	12.7692
+++++++	chr1:116930651-116930857(+)$1	206	16	23	17.0769
e[eeeee	chr19:51835520-51835789(-)$1	269	116	123	12.7692
ff]ccc2	chr17:53362962-53363228(+)$1	266	225	232	12.6153
ddnnnnn	chr3:145841824-145842035(-)$1	211	162	169	17.0769
oooooff	chr3:133483648-133483851(+)$1	203	149	156	12.9999
ccc]hhh	chrX:153275894-153276158(-)$1	264	102	109	12.9999
DOOOOOO	chr11:35313863-35314137(-)$1	274	45	52	17.0769
BMMMMGG	chr3:49823165-49823444(-)$1	279	47	54	12.9999
rrrrrr=	chr15:59189245-59189493(-)$1	248	186	193	13.3076
eddddrr	chr10:105360951-105361193(-)$1	242	86	93	12.7692
eeee]gg	chr19:1981000-1981299(+)$1	299	225	232	12.6923
oooooob	chr1:55316788-55317026(-)$1	238	97	104	12.6923
JJJJJJJ	chr5:74016365-74016610(+)$1	245	231	238	12.9999
fqqqqqq	chr2:242445647-242445914(-)$1	267	21	28	13.6153
TTTTTEE	chr2:21231010-21231243(-)$1	233	34	41	17.0769
iiiiicc	chr4:155530802-155531015(-)$1	213	31	38	13.6153
[ddddrr	chr3:185364026-185364298(-)$1	272	32	39	12.7692

#DB
.......	chr6:29913144-29913363(+)$1	1	68	75	13.6153
((.....	chr12:56119133-56119368(-)$1	1	76	83	12.7692
..)))))	chr2:61272783-61273070(+)$1	1	132	139	12.9999
(.(((((	chr6:30551920-30552189(+)$1	1	82	89	12.7692
))))))(	chr17:80544611-80544868(+)$1	1	189	196	13.3076
((((((.	chr4:79202475-79202687(+)$1	1	34	41	17.0769
.((((..	chr8:48696216-48696471(-)$1	1	38	45	12.8461
.))))..	chr20:46284837-46285081(+)$1	1	32	39	13.6153
.......	chr5:126889448-126889721(+)$1	1	223	230	12.7692
.....((	chr12:123782486-123782748(-)$1	1	5	12	12.7692
......(	chr7:103301869-103302074(-)$1	1	34	41	12.6923
((....)	chr16:3241944-3242147(+)$1	1	123	130	13.6153
(((((((	chr8:141856604-141856865(-)$1	1	62	69	17.0769
(......	chr2:231742066-231742349(+)$1	1	38	45	12.9999
)))))))	chr6:132175366-132175642(+)$1	1	58	65	12.6153
.......	chr5:179143033-179143258(+)$1	1	60	67	12.6923
(((....	chr2:47707860-47708111(+)$1	1	161	168	12.8461
(...(((	chr2:128890671-128890918(+)$1	1	28	35	12.6923
.))))..	chr5:1318274-1318533(-)$1	1	99	106	13.6153
)))))))	chr1:156343573-156343822(+)$1	1	127	134	17.0769
(((((.(	chr20:21314100-21314354(+)$1	1	70	77	12.7692
....)).	chr6:86243328-86243613(-)$1	1	84	91	13.6153
(((..((	chr10:11567283-11567491(-)$1	1	3	10	13.6153
)))).))	chr9:74299649-74299933(-)$1	1	108	115	17.0769
)).....	chr1:207940257-207940468(+)$1	1	201	208	12.7692
((..(((	chr12:53691550-53691809(+)$1	1	55	62	12.6923
.(((((.	chr8:38934724-38934961(+)$1	1	70	77	12.7692
.))))))	chr9:4711543-4711802(-)$1	1	221	228	12.6153
.......	chr6:160494193-160494421(+)$1	1	19	26	12.5384
.......	chr5:141380791-141381076(-)$1	1	224	231	17.0769
...))))	chr2:128950041-128950282(+)$1	1	136	143	17.0769
)))))..	chr2:47554965-47555218(-)$1	1	180	187	13.6153
(((((((	chr8:57892511-57892855(-)$1	1	85	92	17.0769
...))))	chr3:186303040-186303305(+)$1	1	231	238	17.0769
).....)	chr6:160448172-160448444(+)$1	1	34	41	12.9999
......)	chr12:9258766-9258981(-)$1	1	21	28	13.6153
.......	chr11:1774333-1774582(-)$1	1	0	7	12.9999
))..(((	chr12:1881911-1882174(+)$1	1	74	81	12.6923
(......	chr10:1086226-1086598(-)$1	1	85	92	12.7692
(((((((	chr21:18931191-18931462(+)$1	1	87	94	12.8461
...((((	chr15:69072171-69072410(-)$1	1	32	39	17.0769
).))))(	chr15:58919798-58920040(-)$1	1	132	139	12.9999
)))..((	chrX:99890585-99890834(-)$1	1	63	70	12.6153
.))))))	chr10:98286869-98287091(-)$1	1	32	39	12.8461
)))))..	chr11:22777330-22777599(+)$1	1	194	201	17.0769
((.((((	chr8:38940120-38940342(+)$1	1	23	30	13.6153
..(((((	chr3:57562941-57563166(-)$1	1	57	64	13.6153
(((((((	chr17:45247194-45247442(-)$1	1	0	7	12.7692
.......	chr1:116930651-116930857(+)$1	1	16	23	17.0769
(.(((((	chr19:51835520-51835789(-)$1	1	116	123	12.7692
)).))).	chr17:53362962-53363228(+)$1	1	225	232	12.6153
((.....	chr3:145841824-145842035(-)$1	1	162	169	17.0769
.....))	chr3:133483648-133483851(+)$1	1	149	156	12.9999
))).)))	chrX:153275894-153276158(-)$1	1	102	109	12.9999
(......	chr11:35313863-35314137(-)$1	1	45	52	17.0769
(....((	chr3:49823165-49823444(-)$1	1	47	54	12.9999
......)	chr15:59189245-59189493(-)$1	1	186	193	13.3076
(((((..	chr10:105360951-105361193(-)$1	1	86	93	12.7692
)))).))	chr19:1981000-1981299(+)$1	1	225	232	12.6923
......)	chr1:55316788-55317026(-)$1	1	97	104	12.6923
)))))))	chr5:74016365-74016610(+)$1	1	231	238	12.9999
(......	chr2:242445647-242445914(-)$1	1	21	28	13.6153
.....((	chr2:21231010-21231243(-)$1	1	34	41	17.0769
)))))))	chr4:155530802-155531015(-)$1	1	31	38	13.6153
.((((..	chr3:185364026-185364298(-)$1	1	32	39	12.7692

#PSSM
U : 0.86	G : 0.04	u : 0.04	A : 0.03	C : 0.01	
G : 0.76	A : 0.07	U : 0.07	C : 0.03	a : 0.01	g : 0.01	u : 0.01	
U : 0.84	A : 0.07	u : 0.04	C : 0.03	
U : 0.87	A : 0.06	u : 0.04	G : 0.01	
U : 0.86	C : 0.04	u : 0.04	A : 0.03	G : 0.01	
U : 0.89	C : 0.04	u : 0.03	g : 0.01	G : 0.01	
U : 0.83	G : 0.06	u : 0.04	A : 0.03	C : 0.03	

#score	902.5384615384605
#seq	65
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_CDS_m1_run2.nuc.txt

#NT
GCCCU	chr1:214169892-214170163(+)$1	271	7	12	14.9999
GCCCU	chr20:4679970-4680249(+)$1	279	23	28	14.9999
GCCCU	chr6:30711634-30711886(-)$1	252	92	97	14.9999
GCCCU	chr22:29192964-29193226(-)$1	262	129	134	14.9999
GCCCU	chr15:44086061-44086286(+)$1	225	28	33	14.9999
GCCCU	chr20:52199147-52199453(-)$1	306	276	281	14.9999
GCCCU	chr7:6505613-6505898(-)$1	285	250	255	14.9999
GCCCU	chr1:145440943-145441153(+)$1	210	51	56	14.9999
GCCCU	chr22:29196303-29196563(-)$1	260	153	158	14.9999
GCCCU	chr3:186760849-186761160(+)$1	311	56	61	14.9999
GCCCU	chr13:113760961-113761265(+)$1	304	147	152	14.9999
GCCCU	chr20:278163-278466(+)$1	303	17	22	14.9999
GCCCU	chr2:171572746-171572982(+)$1	236	141	146	14.9999
GCCCU	chr22:29196261-29196498(-)$1	237	88	93	14.9999
GCCCU	chr7:100172805-100173066(-)$1	261	153	158	14.9999
GCCCU	chr2:235951239-235951550(+)$1	311	223	228	14.9999
GCCCU	chr16:56643143-56643390(+)$1	247	46	51	14.9999
GCCCU	chr22:29196364-29196621(-)$1	257	211	216	14.9999
GCCCU	chr14:35873629-35873919(-)$1	290	260	265	14.9999
GCCCU	chr2:171573810-171574077(+)$1	267	104	109	14.9999
GCCCU	chr14:35873556-35873829(-)$1	273	170	175	14.9999
GCCCU	chr22:29193026-29193287(-)$1	261	190	195	14.9999
GCCCU	chr1:20980053-20980330(-)$1	277	97	102	14.9999
GCCCU	chr22:29196236-29196461(-)$1	225	51	56	14.9999
GCCCU	chr6:30712038-30712284(-)$1	246	236	241	14.9999
GCCCU	chr16:31102269-31102561(-)$1	292	107	112	14.9999
GCCCU	chr20:30193189-30193443(+)$1	254	163	168	14.9999
GCCCU	chr19:18704233-18704490(-)$1	257	53	58	14.9999

#otherMatches

#Struct PSSM
{GGGG	chr22:29196197-29196436(-)$1	239	26	31	14.9999
!afff	chr1:214169892-214170163(+)$1	271	7	12	14.9999
ggggg	chr20:4679970-4680249(+)$1	279	23	28	14.9999
ddbb$	chr6:30711634-30711886(-)$1	252	92	97	14.9999
ddd[d	chr22:29192964-29193226(-)$1	262	129	134	14.9999
ddrrr	chr15:44086061-44086286(+)$1	225	28	33	14.9999
fffff	chr20:52199147-52199453(-)$1	306	276	281	14.9999
hhrrr	chr7:6505613-6505898(-)$1	285	250	255	14.9999
c[bb#	chr1:145440943-145441153(+)$1	210	51	56	14.9999
ddeee	chr22:29196303-29196563(-)$1	260	153	158	14.9999
ccc::	chr3:186760849-186761160(+)$1	311	56	61	14.9999
fffff	chr13:113760961-113761265(+)$1	304	147	152	14.9999
ffff:	chr20:278163-278466(+)$1	303	17	22	14.9999
dddd!	chr2:171572746-171572982(+)$1	236	141	146	14.9999
ddeee	chr22:29196261-29196498(-)$1	237	88	93	14.9999
eeeee	chr7:100172805-100173066(-)$1	261	153	158	14.9999
ggggg	chr2:235951239-235951550(+)$1	311	223	228	14.9999
eeeee	chr16:56643143-56643390(+)$1	247	46	51	14.9999
DDDD}	chr22:29196364-29196621(-)$1	257	211	216	14.9999
dd[cc	chr14:35873629-35873919(-)$1	290	260	265	14.9999
a]ggg	chr2:171573810-171574077(+)$1	267	104	109	14.9999
hhhhh	chr14:35873556-35873829(-)$1	273	170	175	14.9999
qccc]	chr22:29193026-29193287(-)$1	261	190	195	14.9999
cccDD	chr1:20980053-20980330(-)$1	277	97	102	14.9999
ddeee	chr22:29196236-29196461(-)$1	225	51	56	14.9999
EE:::	chr6:30712038-30712284(-)$1	246	236	241	14.9999
a]ddd	chr16:31102269-31102561(-)$1	292	107	112	14.9999
EEEYY	chr20:30193189-30193443(+)$1	254	163	168	14.9999
88888	chr19:18704233-18704490(-)$1	257	53	58	14.9999

#DB
.((((	chr22:29196197-29196436(-)$1	1	26	31	14.9999
.((((	chr1:214169892-214170163(+)$1	1	7	12	14.9999
)))))	chr20:4679970-4680249(+)$1	1	23	28	14.9999
((((.	chr6:30711634-30711886(-)$1	1	92	97	14.9999
(((.(	chr22:29192964-29193226(-)$1	1	129	134	14.9999
((...	chr15:44086061-44086286(+)$1	1	28	33	14.9999
)))))	chr20:52199147-52199453(-)$1	1	276	281	14.9999
((...	chr7:6505613-6505898(-)$1	1	250	255	14.9999
(.((.	chr1:145440943-145441153(+)$1	1	51	56	14.9999
))(((	chr22:29196303-29196563(-)$1	1	153	158	14.9999
)))..	chr3:186760849-186761160(+)$1	1	56	61	14.9999
)))))	chr13:113760961-113761265(+)$1	1	147	152	14.9999
)))).	chr20:278163-278466(+)$1	1	17	22	14.9999
((((.	chr2:171572746-171572982(+)$1	1	141	146	14.9999
))(((	chr22:29196261-29196498(-)$1	1	88	93	14.9999
(((((	chr7:100172805-100173066(-)$1	1	153	158	14.9999
)))))	chr2:235951239-235951550(+)$1	1	223	228	14.9999
(((((	chr16:56643143-56643390(+)$1	1	46	51	14.9999
)))).	chr22:29196364-29196621(-)$1	1	211	216	14.9999
((.((	chr14:35873629-35873919(-)$1	1	260	265	14.9999
).)))	chr2:171573810-171574077(+)$1	1	104	109	14.9999
(((((	chr14:35873556-35873829(-)$1	1	170	175	14.9999
.))).	chr22:29193026-29193287(-)$1	1	190	195	14.9999
)))((	chr1:20980053-20980330(-)$1	1	97	102	14.9999
))(((	chr22:29196236-29196461(-)$1	1	51	56	14.9999
))...	chr6:30712038-30712284(-)$1	1	236	241	14.9999
).)))	chr16:31102269-31102561(-)$1	1	107	112	14.9999
)))..	chr20:30193189-30193443(+)$1	1	163	168	14.9999
.....	chr19:18704233-18704490(-)$1	1	53	58	14.9999

#PSSM
G : 0.99	
C : 0.99	
C : 0.99	
C : 0.99	
U : 0.99	

#score	434.99999999999994
#seq	29
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_UTR_m3_run1.nuc.txt

#NT
AUUGUAAA	chr12:104341409-104341685(+)$1	276	24	32	17.5416
AUUAUAAA	chr5:179147314-179147562(+)$1	248	197	205	13.5833
AUUGUAAA	chr13:107196029-107196277(-)$1	248	211	219	17.5416
AGUGUAAA	chr11:75111333-75111659(+)$1	326	44	52	13.1666
AUUGUAAU	chr19:8532318-8532535(+)$1	217	87	95	13.9999
AUUGAAAG	chr12:76449748-76449964(-)$1	216	28	36	13.1666
AUUGAAAA	chr18:9255445-9255700(+)$1	255	241	249	16.7083
AUGGAAAA	chr17:27047465-27047735(+)$1	270	111	119	12.1249
AUUGAAAG	chr12:76449740-76449948(-)$1	208	12	20	13.1666
AUUGGAGA	chr14:102549270-102549477(-)$1	207	85	93	12.1249
auuggaga	chr17:8076671-8076902(-)$1	231	56	64	12.1249
AUUGGGAA	chr6:31804772-31805004(+)$1	232	77	85	12.1249
AUUGAAAA	chr2:187368764-187369056(+)$1	292	18	26	16.7083
AUUGAGAA	chr12:21788376-21788670(-)$1	294	39	47	12.9583
AUUGUAAA	chr12:104341332-104341586(+)$1	254	101	109	17.5416
CUUGAAAA	chr10:70546202-70546434(+)$1	232	187	195	12.3333
auuauaaa	chr8:124348512-124348762(-)$1	250	232	240	13.5833
AUUGUAAC	chr1:16199905-16200159(+)$1	254	190	198	13.7916
UUUGUAAA	chr6:31797644-31797946(+)$1	302	119	127	13.1666
AUUUUAAA	chr10:79800301-79800545(+)$1	244	25	33	13.3749
AUUGUGAA	chr15:66795598-66795830(-)$1	232	65	73	13.7916
auuggaga	chr17:8076658-8076871(-)$1	213	25	33	12.1249
AAUGAAAA	chr18:47017930-47018195(-)$1	265	135	143	12.3333

#otherMatches

#Struct PSSM
::eeeee[	chr8:97243080-97243373(-)$1	293	200	208	13.9999
$$ffffff	chr12:104341409-104341685(+)$1	276	24	32	17.5416
hhhhhh::	chr5:179147314-179147562(+)$1	248	197	205	13.5833
::::::::	chr13:107196029-107196277(-)$1	248	211	219	17.5416
FFFFFF::	chr11:75111333-75111659(+)$1	326	44	52	13.1666
yyyyyyyy	chr19:8532318-8532535(+)$1	217	87	95	13.9999
!ggggggg	chr12:76449748-76449964(-)$1	216	28	36	13.1666
EEBB::::	chr18:9255445-9255700(+)$1	255	241	249	16.7083
[ccc++++	chr17:27047465-27047735(+)$1	270	111	119	12.1249
!ggggggg	chr12:76449740-76449948(-)$1	208	12	20	13.1666
[ffffff'	chr14:102549270-102549477(-)$1	207	85	93	12.1249
:::DDDDe	chr17:8076671-8076902(-)$1	231	56	64	12.1249
g[dddd""	chr6:31804772-31805004(+)$1	232	77	85	12.1249
FFFFMMMM	chr2:187368764-187369056(+)$1	292	18	26	16.7083
iiiiii[b	chr12:21788376-21788670(-)$1	294	39	47	12.9583
$$ffffff	chr12:104341332-104341586(+)$1	254	101	109	17.5416
oooooodd	chr10:70546202-70546434(+)$1	232	187	195	12.3333
GGGGGG}D	chr8:124348512-124348762(-)$1	250	232	240	13.5833
eeerrrrr	chr1:16199905-16200159(+)$1	254	190	198	13.7916
ooobb]dd	chr6:31797644-31797946(+)$1	302	119	127	13.1666
f[dddd!!	chr10:79800301-79800545(+)$1	244	25	33	13.3749
::gggggg	chr15:66795598-66795830(-)$1	232	65	73	13.7916
:::DDDDe	chr17:8076658-8076871(-)$1	213	25	33	12.1249
::::::dd	chr18:47017930-47018195(-)$1	265	135	143	12.3333

#DB
..(((((.	chr8:97243080-97243373(-)$1	1	200	208	13.9999
..((((((	chr12:104341409-104341685(+)$1	1	24	32	17.5416
))))))..	chr5:179147314-179147562(+)$1	1	197	205	13.5833
........	chr13:107196029-107196277(-)$1	1	211	219	17.5416
((((((..	chr11:75111333-75111659(+)$1	1	44	52	13.1666
........	chr19:8532318-8532535(+)$1	1	87	95	13.9999
.(((((((	chr12:76449748-76449964(-)$1	1	28	36	13.1666
))))....	chr18:9255445-9255700(+)$1	1	241	249	16.7083
.(((....	chr17:27047465-27047735(+)$1	1	111	119	12.1249
.(((((((	chr12:76449740-76449948(-)$1	1	12	20	13.1666
.((((((.	chr14:102549270-102549477(-)$1	1	85	93	12.1249
...(((((	chr17:8076671-8076902(-)$1	1	56	64	12.1249
(.((((..	chr6:31804772-31805004(+)$1	1	77	85	12.1249
((((....	chr2:187368764-187369056(+)$1	1	18	26	16.7083
((((((.(	chr12:21788376-21788670(-)$1	1	39	47	12.9583
..((((((	chr12:104341332-104341586(+)$1	1	101	109	17.5416
......))	chr10:70546202-70546434(+)$1	1	187	195	12.3333
)))))).)	chr8:124348512-124348762(-)$1	1	232	240	13.5833
(((.....	chr1:16199905-16200159(+)$1	1	190	198	13.7916
...)).))	chr6:31797644-31797946(+)$1	1	119	127	13.1666
(.((((..	chr10:79800301-79800545(+)$1	1	25	33	13.3749
..((((((	chr15:66795598-66795830(-)$1	1	65	73	13.7916
...(((((	chr17:8076658-8076871(-)$1	1	25	33	12.1249
......((	chr18:47017930-47018195(-)$1	1	135	143	12.3333

#PSSM
A : 0.79	a : 0.12	C : 0.04	U : 0.04	
U : 0.79	u : 0.12	G : 0.04	A : 0.04	
U : 0.83	u : 0.12	G : 0.04	
G : 0.79	g : 0.08	A : 0.04	a : 0.04	U : 0.04	
U : 0.45	A : 0.33	G : 0.08	g : 0.08	u : 0.04	
A : 0.74	a : 0.12	G : 0.12	
A : 0.83	g : 0.08	G : 0.04	a : 0.04	
A : 0.66	a : 0.12	U : 0.08	G : 0.08	C : 0.04	

#score	333.0833333333333
#seq	24
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_CDS_m1_run1.nuc.txt

#NT
UGCUG	chr3:186335001-186335234(+)$1	233	16	21	15.0000
UGCUG	chr4:74279205-74279419(+)$1	214	56	61	15.0000
UGCUG	chr1:230839973-230840183(-)$1	210	129	134	15.0000
UGCUG	chr17:42429608-42429858(+)$1	250	106	111	15.0000
UGCUG	chr3:186336268-186336485(+)$1	217	144	149	15.0000
UGCUG	chr6:132271466-132271694(-)$1	228	199	204	15.0000
UGCUG	chr11:63676497-63676724(+)$1	227	39	44	15.0000
UGCUG	chr1:116935420-116935692(+)$1	272	109	114	15.0000
UGCUG	chr17:27050607-27050834(+)$1	227	133	138	15.0000
UGCUG	chr3:186336232-186336448(+)$1	216	180	185	15.0000
UGCUG	chr2:216251327-216251623(-)$1	296	282	287	15.0000
UGCUG	chr2:216300324-216300541(-)$1	217	41	46	15.0000
UGCUG	chr1:980493-980760(+)$1	267	109	114	15.0000
UGCUG	chr9:124083444-124083695(+)$1	251	64	69	15.0000
UGCUG	chr3:133476512-133476726(+)$1	214	164	169	15.0000
UGCUG	chr17:27050600-27050807(+)$1	207	140	145	15.0000
UGCUG	chr2:216248653-216248935(-)$1	282	128	133	15.0000
UGCUG	chr2:216259216-216259450(-)$1	234	81	86	15.0000
UGCUG	chr1:230845951-230846193(-)$1	242	204	209	15.0000
UGCUG	chr2:216300278-216300524(-)$1	246	24	29	15.0000
UGCUG	chr12:57598344-57598575(+)$1	231	57	62	15.0000
UGCUG	chr8:27457234-27457491(-)$1	257	103	108	15.0000
UGCUG	chr3:186336224-186336432(+)$1	208	188	193	15.0000
UGCUG	chr1:8926451-8926661(-)$1	210	130	135	15.0000
UGCUG	chr1:955514-955786(+)$1	272	75	80	15.0000
UGCUG	chr10:73587755-73587992(-)$1	237	131	136	15.0000
UGCUG	chr8:11704493-11704767(-)$1	274	212	217	15.0000
UGCUG	chr2:216271784-216272023(-)$1	239	103	108	15.0000
UGCUG	chr1:8931857-8932069(-)$1	212	37	42	15.0000
UGCUG	chr3:186336248-186336468(+)$1	220	164	169	15.0000
UGCUG	chr6:132271814-132272059(-)$1	245	9	14	15.0000
UGCUG	chr2:216286789-216287023(-)$1	234	213	218	15.0000
UGCUG	chr3:133475025-133475272(+)$1	247	16	21	15.0000
UGCUG	chr17:26697115-26697386(-)$1	271	196	201	15.0000
UGCUG	chr19:49993123-49993366(+)$1	243	50	55	15.0000
UGCUG	chr1:230839951-230840164(-)$1	213	110	115	15.0000
ugcug	chr9:124065095-124065404(+)$1	309	6	11	15.0000
UGCUG	chr14:95089953-95090230(+)$1	277	44	49	15.0000

#otherMatches

#Struct PSSM
[dddd	chr2:216259198-216259416(-)$1	218	47	52	15.0000
GGGGL	chr3:186335001-186335234(+)$1	233	16	21	15.0000
!bb""	chr4:74279205-74279419(+)$1	214	56	61	15.0000
c[eee	chr1:230839973-230840183(-)$1	210	129	134	15.0000
fffff	chr17:42429608-42429858(+)$1	250	106	111	15.0000
ddd]b	chr3:186336268-186336485(+)$1	217	144	149	15.0000
2bb]a	chr6:132271466-132271694(-)$1	228	199	204	15.0000
eeeoo	chr11:63676497-63676724(+)$1	227	39	44	15.0000
FGGGG	chr1:116935420-116935692(+)$1	272	109	114	15.0000
ZCCC:	chr17:27050607-27050834(+)$1	227	133	138	15.0000
eeeeF	chr3:186336232-186336448(+)$1	216	180	185	15.0000
EEEEE	chr2:216251327-216251623(-)$1	296	282	287	15.0000
g]bbC	chr2:216300324-216300541(-)$1	217	41	46	15.0000
mmmmc	chr1:980493-980760(+)$1	267	109	114	15.0000
]ffff	chr9:124083444-124083695(+)$1	251	64	69	15.0000
ZDDDD	chr3:133476512-133476726(+)$1	214	164	169	15.0000
ccca]	chr17:27050600-27050807(+)$1	207	140	145	15.0000
fffff	chr2:216248653-216248935(-)$1	282	128	133	15.0000
eeeee	chr2:216259216-216259450(-)$1	234	81	86	15.0000
ffffb	chr1:230845951-230846193(-)$1	242	204	209	15.0000
g]bbb	chr2:216300278-216300524(-)$1	246	24	29	15.0000
CGGGG	chr12:57598344-57598575(+)$1	231	57	62	15.0000
2eeee	chr8:27457234-27457491(-)$1	257	103	108	15.0000
pbbdd	chr3:186336224-186336432(+)$1	208	188	193	15.0000
odddd	chr1:8926451-8926661(-)$1	210	130	135	15.0000
===tt	chr1:955514-955786(+)$1	272	75	80	15.0000
ccc]b	chr10:73587755-73587992(-)$1	237	131	136	15.0000
ppeee	chr8:11704493-11704767(-)$1	274	212	217	15.0000
ellle	chr2:216271784-216272023(-)$1	239	103	108	15.0000
e[ccc	chr1:8931857-8932069(-)$1	212	37	42	15.0000
eeeeF	chr3:186336248-186336468(+)$1	220	164	169	15.0000
cc[cc	chr6:132271814-132272059(-)$1	245	9	14	15.0000
ddd:B	chr2:216286789-216287023(-)$1	234	213	218	15.0000
E:eee	chr3:133475025-133475272(+)$1	247	16	21	15.0000
444ee	chr17:26697115-26697386(-)$1	271	196	201	15.0000
CCCDD	chr19:49993123-49993366(+)$1	243	50	55	15.0000
c[eee	chr1:230839951-230840164(-)$1	213	110	115	15.0000
FFFFF	chr9:124065095-124065404(+)$1	309	6	11	15.0000
fffff	chr14:95089953-95090230(+)$1	277	44	49	15.0000

#DB
.((((	chr2:216259198-216259416(-)$1	1	47	52	15.0000
((((.	chr3:186335001-186335234(+)$1	1	16	21	15.0000
.((..	chr4:74279205-74279419(+)$1	1	56	61	15.0000
(.(((	chr1:230839973-230840183(-)$1	1	129	134	15.0000
(((((	chr17:42429608-42429858(+)$1	1	106	111	15.0000
))).)	chr3:186336268-186336485(+)$1	1	144	149	15.0000
.)).)	chr6:132271466-132271694(-)$1	1	199	204	15.0000
(((..	chr11:63676497-63676724(+)$1	1	39	44	15.0000
)))))	chr1:116935420-116935692(+)$1	1	109	114	15.0000
.))).	chr17:27050607-27050834(+)$1	1	133	138	15.0000
)))))	chr3:186336232-186336448(+)$1	1	180	185	15.0000
)))))	chr2:216251327-216251623(-)$1	1	282	287	15.0000
).))(	chr2:216300324-216300541(-)$1	1	41	46	15.0000
....)	chr1:980493-980760(+)$1	1	109	114	15.0000
.))))	chr9:124083444-124083695(+)$1	1	64	69	15.0000
.))))	chr3:133476512-133476726(+)$1	1	164	169	15.0000
)))).	chr17:27050600-27050807(+)$1	1	140	145	15.0000
(((((	chr2:216248653-216248935(-)$1	1	128	133	15.0000
)))))	chr2:216259216-216259450(-)$1	1	81	86	15.0000
)))))	chr1:230845951-230846193(-)$1	1	204	209	15.0000
).)))	chr2:216300278-216300524(-)$1	1	24	29	15.0000
(((((	chr12:57598344-57598575(+)$1	1	57	62	15.0000
.))))	chr8:27457234-27457491(-)$1	1	103	108	15.0000
.))))	chr3:186336224-186336432(+)$1	1	188	193	15.0000
.))))	chr1:8926451-8926661(-)$1	1	130	135	15.0000
(((..	chr1:955514-955786(+)$1	1	75	80	15.0000
))).)	chr10:73587755-73587992(-)$1	1	131	136	15.0000
..)))	chr8:11704493-11704767(-)$1	1	212	217	15.0000
(...)	chr2:216271784-216272023(-)$1	1	103	108	15.0000
(.(((	chr1:8931857-8932069(-)$1	1	37	42	15.0000
)))))	chr3:186336248-186336468(+)$1	1	164	169	15.0000
((.((	chr6:132271814-132272059(-)$1	1	9	14	15.0000
))).)	chr2:216286789-216287023(-)$1	1	213	218	15.0000
(.(((	chr3:133475025-133475272(+)$1	1	16	21	15.0000
...))	chr17:26697115-26697386(-)$1	1	196	201	15.0000
(((((	chr19:49993123-49993366(+)$1	1	50	55	15.0000
(.(((	chr1:230839951-230840164(-)$1	1	110	115	15.0000
(((((	chr9:124065095-124065404(+)$1	1	6	11	15.0000
(((((	chr14:95089953-95090230(+)$1	1	44	49	15.0000

#PSSM
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	

#score	585.0000000000001
#seq	39
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_transcript_m2_run2.nuc.txt

#NT
gggccagggccucggggcggggcgggggaggggccg	chrX:102470509-102470788(+)$1	279	2	38	22.4791
aggaagcggggcccggggcgcgccggggccgggcgc	chr19:3062181-3062463(-)$1	282	63	99	23.9374
CCGGGGAAGGCCCCCGCGAGCGCAGGGAGGGGCCGG	chr3:195635820-195636063(-)$1	243	154	190	17.5833
GUGGGACGGGGGUUGGGGGGAGCUCGGAGGCCGUGG	chr12:132401655-132401930(+)$1	275	179	215	21.5416
GCGAGACGGGGCUAGAGGAGGCGGAGCUGGGAGCGG	chrX:149108406-149108656(+)$1	250	5	41	18.9374
CGGCGGCGGUAGGUGGCGCGCGGGUCCGGCGGGCGG	chr19:47634055-47634387(+)$1	332	52	88	19.0416
AGUGGGCGGGGCUAGAGCCGGGCUUGGUGUGGCCGG	chr19:46174223-46174498(+)$1	275	173	209	19.4583
gggguccuggguggggugcgugcugggugggggugu	chr12:133295117-133295370(+)$1	253	41	77	22.8958
GGCCCGCGGGCGCACGGGCGAGCGGGCCGGGAGCCG	chr8:98788087-98788348(+)$1	261	12	48	20.3958
gggcggcggcugcggcggggcuauggcgagcggcgg	chr2:220043020-220043333(+)$1	313	32	68	21.9583
AUAGCUCCUGCCCGGGCGggcgcgcggcggcggcgg	chr5:139027853-139028130(+)$1	277	52	88	16.8541
ggagggugggaaggggcgggAGGUUUUCUGGGGUGG	chr19:1148267-1148563(-)$1	296	44	80	17.4791
GUGAGUGGGAccgcggggcgcgggcuggggcggcgg	chr18:44702510-44702731(-)$1	221	174	210	21.4374
CGGGGCGGGGCCAGGGCGGGUGCgcggcggcggcgg	chr1:6845435-6845745(+)$1	310	50	86	28.8333
ggugggauggggagagguggggagaggugggguggg	chr20:60735377-60735612(+)$1	235	33	69	18.9374
GCGUGCCAGCUCCGGGAGGCCGCGGUGAGGGGCCGG	chr7:108210274-108210662(+)$1	388	154	190	17.4791
ggggggcgggaccgggggcgcgcggggugggggcgg	chr4:2936006-2936281(-)$1	275	55	91	46.4375
UGAGUGAGGGGCUGGGGGCAGGCGUGAGGGUAGCGG	chr1:1051216-1051511(-)$1	295	73	109	18.6250
gaggaguggggggaggagggggaggagugggggagg	chr1:1179966-1180221(-)$1	255	76	112	24.5625
CGGGAGGGGCUGCCAGGGGGCGCUGGCCGGGCGCCG	chr16:89555968-89556183(-)$1	215	73	109	16.6458
AGGGGACCUGGAGGGGGCCGAGCUGGGUGGGUGGUG	chr7:150780135-150780397(-)$1	262	110	146	16.7499
cggcggcgguagaggcggcggcggcggcggcagcgg	chr17:7210819-7211061(+)$1	242	153	189	21.6458
GCGAggcgccgcggggcccgcgcucggagccggcgg	chrX:39955207-39955520(-)$1	313	157	193	20.9166
CUGAggcggcggcggcggcggcggcggcggcggcgU	chr7:77166502-77166764(+)$1	262	14	50	21.6458
GGGGUGUGGGACCGGGUGGGCCCCUGCCUGGGCGGG	chr19:2271144-2271453(+)$1	309	91	127	17.4791
gguggcaggugggggcgguugggagguugggggggg	chr13:108867606-108867861(-)$1	255	45	81	17.1666
gggaggggcgugcgcgugugggaggggcgggugcgg	chr10:111986983-111987228(+)$1	245	52	88	25.3958
GGGAUACGGGGCCCGGGGCGGGAGAGGUUGGGGUAG	chr11:62368812-62369055(-)$1	243	177	213	26.1249
gggcggcgggcucgggcgcgggcggcggcggcUCGG	chr14:96001321-96001588(+)$1	267	193	229	26.9583
GAAGAUUGGGGAGGAGUGGGGGAGGGGUGGGGGCGG	chrX:41194236-41194530(+)$1	294	64	100	22.9999
GGGGGGCACCGUCCGGGGCGCCUGAUUUGCGGGAGG	chr19:2269868-2270105(+)$1	237	107	143	14.6666
GGGUGGUGGACCUGGGGCCGAGGAGGCUAGAGGAGG	chr22:35736190-35736456(+)$1	266	17	53	17.8958
aggaagcggggcccggggcgcgccggggccgggcgc	chr19:3062263-3062521(-)$1	258	121	157	23.9374
AGGCGGCGGCGGCGGCGCUGCGGCGGGUUCGGUGGG	chr1:1208945-1209221(-)$1	276	21	57	16.4375
GAGGGCCAGGUGCUGGGGCGGGAGAGUCGGGUGCUG	chr21:46927268-46927560(+)$1	292	104	140	19.7708
ggagggugcggcggggagggugcggcggggaggcug	chr11:1308454-1308737(-)$1	283	9	45	24.1458
GGAAGACGGCGCGGCGGGGCCGCGAGCAGGGGGCAG	chr6:42750351-42750659(+)$1	308	171	207	20.7083
CGGCCCCGGGACCAAGGAGGUGAGGGGUGGGGGCGG	chr19:56632442-56632729(-)$1	287	170	206	23.2083
gguggggggagcggacgggaggcgggguggaggugg	chr17:77812512-77812787(-)$1	275	56	92	23.2083
UGGGGGUGCGAACGGAGGGGUGCGGGGACGGGCAGG	chr16:2867727-2868036(+)$1	309	245	281	20.3958
gggcggcgcgcgcgcgcgcgcgAGAGGCGGCUGUUG	chr6:111136245-111136499(-)$1	254	33	69	20.2916
GGGGGGCUGGGCGUGCAGAGGGUUAGAGGGGGGCUG	chr5:1098022-1098320(-)$1	298	10	46	20.9166
ugguggcggcggcggcggaggcggcgguggcggcgg	chr7:65338240-65338499(+)$1	259	3	39	27.2708
GGUGGGGGGGAACGGCGGCCGCGGGUGGUGCGGAGG	chr5:137688347-137688603(+)$1	256	17	53	17.0624
gaggggagggccggggcgggcgggcggugugagcgg	chr3:195636323-195636567(-)$1	244	82	118	28.4166
GGGGGGAGGGCCCGGGAAAAGGGGGAGUUGGAGCCG	chr2:28974736-28974996(+)$1	260	105	141	19.5624
ggguggcucggcgggggcucggcgggggcucggcgg	chr21:46493848-46494163(+)$1	315	45	81	20.7083

#otherMatches

#Struct PSSM
[bb"""gggggggssssssssssggggggg333bb]	chr22:50033004-50033300(-)$1	296	232	268	17.3749
:DDDD{FFFFFFeeeee[dddd[dddd!!eeeee[a	chrX:102470509-102470788(+)$1	279	2	38	22.4791
:::::dddd!!hhhhhhhh[eeeee!!ccc!!dddd	chr19:3062181-3062463(-)$1	282	63	99	23.9374
ffff[a####cccdddd"""a[ccc%%%%%%fffff	chr3:195635820-195636063(-)$1	243	154	190	17.5833
[dddd++++++++++++++hhhhhhhh"""ddddll	chr12:132401655-132401930(+)$1	275	179	215	21.5416
CCMMMMCCC{EEEEENNNNNBBLLLCCC{BB{BBKK	chrX:149108406-149108656(+)$1	250	5	41	18.9374
ffmmmmffffff::A{EEEEE{EEEEE::eeeeenn	chr19:47634055-47634387(+)$1	332	52	88	19.0416
gggggggcccccc"""eeeee[apppppppa]eeee	chr19:46174223-46174498(+)$1	275	173	209	19.4583
GGGGGGG{BB{EEEEE{CCC{AKKFFFFFFKKA{CC	chr12:133295117-133295370(+)$1	253	41	77	22.8958
ggggggg!!bboooooobb22gggggggBBKKEEEE	chr8:98788087-98788348(+)$1	261	12	48	20.3958
ddddahhhhhhhh:hhhhhhhh[dddd!!ffffffe	chr2:220043020-220043333(+)$1	313	32	68	21.9583
llccc22iiiiiiiii:GGGGGGG{CCCEEEEE{CC	chr5:139027853-139028130(+)$1	277	52	88	16.8541
CCC{CCCQQQQQQQQBBMMMMJJJJJJJJJJJJJLL	chr19:1148267-1148563(-)$1	296	44	80	17.4791
ddddccc]bb]iiiiiiiii]ffffff22ggggggg	chr18:44702510-44702731(-)$1	221	174	210	21.4374
ffbb[ggggggg[eeeee[ddddbb[bb[bb[bb!!	chr1:6845435-6845745(+)$1	310	50	86	28.8333
A{DDDDCCC::::::eeeee"""ffffff%%%%%%h	chr20:60735377-60735612(+)$1	235	33	69	18.9374
]a]a]bb22eeeee333ccc:eeeee"""ddddlll	chr7:108210274-108210662(+)$1	388	154	190	17.4791
c]a333ccc22ccc333ffffffffffff[a[bb[d	chr4:2936006-2936281(-)$1	275	55	91	46.4375
::::::::EEEEEFFFFFF{DDDDFFFFFFKKGGGG	chr1:1051216-1051511(-)$1	295	73	109	18.6250
d"""dddd%%%%%%bb[dddd[ccc[ffffff$$$$	chr1:1179966-1180221(-)$1	255	76	112	24.5625
e4444ffffff]bb:JJJJJJJJJJJ:::ffffff[	chr16:89555968-89556183(-)$1	215	73	109	16.6458
AKKFFFFFF::::ffffff!!hhhhhhhhqqqqqqq	chr7:150780135-150780397(-)$1	262	110	146	16.7499
b[bb[bb[bbmmmmbb]bb]bb]bb]bb]bb:====	chr17:7210819-7211061(+)$1	242	153	189	21.6458
ccc[ccc[ammmma]cccccc]ccc333ccchhhhh	chrX:39955207-39955520(-)$1	313	157	193	20.9166
D::JJJJJJJJJJ{IIIIIIIII{DDDD:bb[bb[e	chr7:77166502-77166764(+)$1	262	14	50	21.6458
iiiii::BBKKHHHHHHHH==========[ccceee	chr19:2271144-2271453(+)$1	309	91	127	17.4791
ooooccc88888888bb]dddd333ffffff]ffff	chr13:108867606-108867861(-)$1	255	45	81	17.1666
nnnnna]==========]a55555a]ccc]bb]a::	chr10:111986983-111987228(+)$1	245	52	88	25.3958
FFFZZZHHHHHHHH}FFFFFFYYA}EEEEEYYBBEE	chr11:62368812-62369055(-)$1	243	177	213	26.1249
nnnnnccc]hhhhhhhh]aDDDD}BB}JJJJJJJJJ	chr14:96001321-96001588(+)$1	267	193	229	26.9583
]ffffffeeeee[bb[eeeee[ccc[a[eeeee[hh	chrX:41194236-41194530(+)$1	294	64	100	22.9999
zzzzzeeeeedddd55555iiiiiiiii]a22bb]f	chr19:2269868-2270105(+)$1	237	107	143	14.6666
EEMMMMCCC{DDDD::ccc"""ccc[bbnnnnnbb]	chr22:35736190-35736456(+)$1	266	17	53	17.8958
:::::dddd!!hhhhhhhh[eeeee!!ccc!!dddd	chr19:3062263-3062521(-)$1	258	121	157	23.9374
::bb[ffffffmmmmffffff]bbdddd[ccc[fff	chr1:1208945-1209221(-)$1	276	21	57	16.4375
c!!a[eeeee!!ccc[cccccc[eeeeegggggggs	chr21:46927268-46927560(+)$1	292	104	140	19.7708
ppppppccc]ddddDDDD{BBeeeeeooooooeeee	chr11:1308454-1308737(-)$1	283	9	45	24.1458
JJJJJJJJJfffffflllffffff::::EEEEEKKF	chr6:42750351-42750659(+)$1	308	171	207	20.7083
hhhhccc[bb[eeeee!!ccc%%%%%%a[ffffff[	chr19:56632442-56632729(-)$1	287	170	206	23.2083
DDDD:==========bb[bb[ggggggg####bb[d	chr17:77812512-77812787(-)$1	275	56	92	23.2083
fff22dddd333bbccca333ddddbb22ggggggg	chr16:2867727-2868036(+)$1	309	245	281	20.3958
cnnnnnccc]ccc]ccc]ccc55555ddddeeeee%	chr6:111136245-111136499(-)$1	254	33	69	20.2916
EEEEECCCCCC{DDDD::::GGGGGGG:::eeeee[	chr5:1098022-1098320(-)$1	298	10	46	20.9166
EE{A:bb[bb[bb[bbmmmmbb]bb]bb]bbccc[b	chr7:65338240-65338499(+)$1	259	3	39	27.2708
MEEEEE{BB{A{JJJJJJJJJJKKBBKKCCC{A{HH	chr5:137688347-137688603(+)$1	256	17	53	17.0624
d[bb####ffffff!!ccc[a[dddd%%%%%%bb!!	chr3:195636323-195636567(-)$1	244	82	118	28.4166
ff]aEEEEEEEEEEFFFFFFGGGGGGG?????CCC~	chr2:28974736-28974996(+)$1	260	105	141	19.5624
eeeeedddd[bb[ccc[ccc[bb[ccc[ccc[bb[c	chr21:46493848-46494163(+)$1	315	45	81	20.7083

#DB
.((...(((((((..........)))))))...)).	chr22:50033004-50033300(-)$1	1	232	268	17.3749
.((((.(((((((((((.((((.((((..(((((.(	chrX:102470509-102470788(+)$1	1	2	38	22.4791
.....((((..((((((((.(((((..(((..((((	chr19:3062181-3062463(-)$1	1	63	99	23.9374
((((.(....(((((((...(.(((......(((((	chr3:195635820-195636063(-)$1	1	154	190	17.5833
.((((..............((((((((...((((..	chr12:132401655-132401930(+)$1	1	179	215	21.5416
((....(((.(((((.....((...(((.((.((..	chrX:149108406-149108656(+)$1	1	5	41	18.9374
((....))))))..(.(((((.(((((..(((((..	chr19:47634055-47634387(+)$1	1	52	88	19.0416
(((((((((((((...(((((.(.......).))))	chr19:46174223-46174498(+)$1	1	173	209	19.4583
(((((((.((.(((((.(((.(..((((((..(.((	chr12:133295117-133295370(+)$1	1	41	77	22.8958
(((((((..((......))..)))))))((..((((	chr8:98788087-98788348(+)$1	1	12	48	20.3958
))))))))))))).((((((((.((((..(((((((	chr2:220043020-220043333(+)$1	1	32	68	21.9583
..)))..))))))))).(((((((.((((((((.((	chr5:139027853-139028130(+)$1	1	52	88	16.8541
(((.(((........((....(((((((((((((..	chr19:1148267-1148563(-)$1	1	44	80	17.4791
))))))).)).))))))))).))))))..)))))))	chr18:44702510-44702731(-)$1	1	174	210	21.4374
((((.(((((((.(((((.((((((.((.((.((..	chr1:6845435-6845745(+)$1	1	50	86	28.8333
(.(((((((......(((((...((((((......(	chr20:60735377-60735612(+)$1	1	33	69	18.9374
.).).))..)))))...))).(((((...((((...	chr7:108210274-108210662(+)$1	1	154	190	17.4791
).)...)))..)))...))))))((((((.(.((.(	chr4:2936006-2936281(-)$1	1	55	91	46.4375
........(((((((((((.((((((((((..((((	chr1:1051216-1051511(-)$1	1	73	109	18.6250
(...((((......((.((((.(((.((((((....	chr1:1179966-1180221(-)$1	1	76	112	24.5625
)....)))))).)).(((((((((((...((((((.	chr16:89555968-89556183(-)$1	1	73	109	16.6458
(..((((((....((((((..((((((((.......	chr7:150780135-150780397(-)$1	1	110	146	16.7499
(.((.((.((....)).)).)).)).)).)).((((	chr17:7210819-7211061(+)$1	1	153	189	21.6458
(((.(((.(....).)))))).)))...)))(((((	chrX:39955207-39955520(-)$1	1	157	193	20.9166
(..((((((((((.(((((((((.((((.((.((.(	chr7:77166502-77166764(+)$1	1	14	50	21.6458
)))))..((..((((((((((((((((((.((((((	chr19:2271144-2271453(+)$1	1	91	127	17.4791
....)))........)).))))...)))))).))))	chr13:108867606-108867861(-)$1	1	45	81	17.1666
.....).)))))))))).).....).))).)).)..	chr10:111986983-111987228(+)$1	1	52	88	25.3958
)))...)))))))).))))))..).)))))..))))	chr11:62368812-62369055(-)$1	1	177	213	26.1249
.....))).)))))))).))))).)).)))))))))	chr14:96001321-96001588(+)$1	1	193	229	26.9583
.))))))(((((.((.(((((.(((.(.(((((.((	chrX:41194236-41194530(+)$1	1	64	100	22.9999
.....))))))))).....))))))))).)..)).)	chr19:2269868-2270105(+)$1	1	107	143	14.6666
((....(((.((((..(((...(((.((.....)).	chr22:35736190-35736456(+)$1	1	17	53	17.8958
.....((((..((((((((.(((((..(((..((((	chr19:3062263-3062521(-)$1	1	121	157	23.9374
..((.((((((....)))))).))((((.(((.(((	chr1:1208945-1209221(-)$1	1	21	57	16.4375
(..(.(((((..(((.((((((.((((((((((((.	chr21:46927268-46927560(+)$1	1	104	140	19.7708
......))).))))((((.(((((((......))))	chr11:1308454-1308737(-)$1	1	9	45	24.1458
(((((((((((((((...))))))....(((((..(	chr6:42750351-42750659(+)$1	1	171	207	20.7083
))))(((.((.(((((..(((......(.((((((.	chr19:56632442-56632729(-)$1	1	170	206	23.2083
((((.((((((((((((.((.(((((((....((.(	chr17:77812512-77812787(-)$1	1	56	92	23.2083
)))..))))...))))))...))))))..)))))))	chr16:2867727-2868036(+)$1	1	245	281	20.3958
(.....))).))).))).))).....))))(((((.	chr6:111136245-111136499(-)$1	1	33	69	20.2916
(((((((((((.((((....(((((((...(((((.	chr5:1098022-1098320(-)$1	1	10	46	20.9166
((.(.((.((.((.((....)).)).)).))(((.(	chr7:65338240-65338499(+)$1	1	3	39	27.2708
.(((((.((.(.((((((((((..((..(((.(.((	chr5:137688347-137688603(+)$1	1	17	53	17.0624
(.((....((((((..(((.(.((((......((..	chr3:195636323-195636567(-)$1	1	82	118	28.4166
)).)))))))))))))))))))))))).....))).	chr2:28974736-28974996(+)$1	1	105	141	19.5624
(((((((((.((.(((.(((.((.(((.(((.((.(	chr21:46493848-46494163(+)$1	1	45	81	20.7083

#PSSM
G : 0.35	g : 0.31	C : 0.12	A : 0.08	a : 0.04	U : 0.04	c : 0.02	u : 0.02	
G : 0.39	g : 0.35	C : 0.08	U : 0.08	a : 0.04	A : 0.04	
G : 0.45	g : 0.29	A : 0.08	u : 0.06	U : 0.04	a : 0.04	C : 0.02	
G : 0.33	g : 0.18	A : 0.14	c : 0.10	C : 0.08	a : 0.06	U : 0.04	u : 0.04	
G : 0.39	g : 0.33	a : 0.06	C : 0.06	U : 0.06	A : 0.04	c : 0.02	u : 0.02	
g : 0.37	G : 0.31	A : 0.10	C : 0.08	U : 0.06	c : 0.04	a : 0.02	
C : 0.33	c : 0.25	G : 0.08	U : 0.08	g : 0.06	A : 0.06	u : 0.06	a : 0.06	
G : 0.39	g : 0.37	A : 0.10	u : 0.06	C : 0.04	U : 0.02	
G : 0.47	g : 0.33	c : 0.10	U : 0.04	C : 0.04	
G : 0.39	g : 0.27	c : 0.10	C : 0.10	A : 0.04	u : 0.04	U : 0.02	a : 0.02	
G : 0.25	g : 0.25	C : 0.12	c : 0.10	A : 0.10	a : 0.06	U : 0.06	u : 0.04	
C : 0.31	c : 0.18	g : 0.18	G : 0.12	A : 0.08	u : 0.06	a : 0.02	U : 0.02	
C : 0.29	c : 0.20	g : 0.20	G : 0.12	U : 0.10	a : 0.04	A : 0.02	
g : 0.37	G : 0.29	C : 0.08	U : 0.08	A : 0.08	c : 0.06	a : 0.02	
G : 0.41	g : 0.37	C : 0.06	A : 0.06	a : 0.04	c : 0.04	
G : 0.41	g : 0.33	c : 0.12	A : 0.06	C : 0.06	
G : 0.33	g : 0.27	c : 0.10	C : 0.08	U : 0.06	A : 0.06	u : 0.04	a : 0.04	
G : 0.39	g : 0.37	C : 0.10	c : 0.06	A : 0.04	u : 0.02	
C : 0.22	c : 0.20	g : 0.18	G : 0.18	A : 0.08	u : 0.06	U : 0.02	a : 0.02	
G : 0.41	g : 0.41	C : 0.06	A : 0.04	u : 0.02	a : 0.02	c : 0.02	
g : 0.22	c : 0.18	G : 0.18	C : 0.16	A : 0.12	U : 0.06	u : 0.04	
G : 0.45	g : 0.37	C : 0.08	c : 0.06	u : 0.02	
C : 0.25	c : 0.22	G : 0.16	g : 0.12	A : 0.10	a : 0.08	U : 0.04	
g : 0.33	G : 0.31	U : 0.14	u : 0.06	c : 0.04	A : 0.04	C : 0.04	a : 0.02	
G : 0.27	g : 0.27	c : 0.16	A : 0.14	U : 0.10	C : 0.02	a : 0.02	
G : 0.39	g : 0.37	U : 0.10	c : 0.04	C : 0.02	u : 0.02	a : 0.02	A : 0.02	
g : 0.41	G : 0.27	C : 0.14	U : 0.08	A : 0.04	c : 0.02	u : 0.02	
U : 0.20	g : 0.16	u : 0.16	C : 0.14	A : 0.10	c : 0.10	G : 0.08	a : 0.02	
G : 0.35	g : 0.33	U : 0.14	c : 0.08	a : 0.04	A : 0.02	C : 0.02	
G : 0.45	g : 0.35	c : 0.06	C : 0.06	u : 0.04	U : 0.02	
G : 0.43	g : 0.22	c : 0.18	C : 0.06	a : 0.04	U : 0.02	A : 0.02	
g : 0.37	G : 0.35	A : 0.08	U : 0.06	C : 0.04	a : 0.04	u : 0.02	c : 0.02	
G : 0.41	g : 0.41	C : 0.10	U : 0.04	u : 0.02	
c : 0.33	C : 0.31	U : 0.10	A : 0.08	G : 0.06	u : 0.04	g : 0.04	a : 0.02	
g : 0.39	G : 0.35	C : 0.08	U : 0.08	A : 0.04	c : 0.02	u : 0.02	
G : 0.56	g : 0.35	c : 0.04	u : 0.02	U : 0.02	

#score	1028.5833333333333
#seq	48
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_CDS_m2_run2.nuc.txt

#NT
CCUUCCC	chr6:31611764-31612055(-)$1	291	158	165	12.8461
CCUCCCC	chr17:17723517-17723808(-)$1	291	176	183	16.9999
CCUUCCC	chr7:73011586-73011821(-)$1	235	67	74	12.8461
CCUGCCC	chr2:74653310-74653624(-)$1	314	30	37	12.9999
CCUCCAC	chr11:319633-319960(-)$1	327	19	26	13.3846
CCUCCCG	chr1:230841606-230841898(-)$1	292	227	234	12.7692
CCUCCCC	chr19:48894504-48894799(-)$1	295	47	54	16.9999
CCUCCCA	chr14:101200405-101200669(+)$1	264	127	134	12.7692
CCUCCCC	chr7:73011659-73011938(-)$1	279	18	25	16.9999
CCUCCAC	chr2:220404152-220404376(-)$1	224	76	83	13.3846
CCUCCCG	chr1:230841578-230841806(-)$1	228	135	142	12.7692
CCUCCCC	chr16:30079903-30080121(+)$1	218	197	204	16.9999
CCUCCCC	chr2:171822199-171822524(+)$1	325	123	130	16.9999
ccacccc	chr6:31895698-31896005(+)$1	307	286	293	13.3846
CCGCCCC	chr11:2156497-2156699(-)$1	202	23	30	13.0769
ccacccc	chr16:29818395-29818640(+)$1	245	116	123	13.3846
CCUCCGC	chr5:176524513-176524771(+)$1	258	22	29	13.2307
CCUCCCC	chr7:100771592-100771854(+)$1	262	20	27	16.9999
CCUUCCC	chr20:35827431-35827723(+)$1	292	125	132	12.8461
ccacccc	chr6:34212675-34212951(+)$1	276	107	114	13.3846
CCUCCUC	chr17:79826318-79826566(-)$1	248	12	19	13.3846
ccuccgc	chr12:106641222-106641501(-)$1	279	125	132	13.2307
CCUCCCC	chr11:61048214-61048518(-)$1	304	6	13	16.9999
CCUCCCA	chr19:45452374-45452661(+)$1	287	231	238	12.7692
CCUCCCC	chr11:72425137-72425431(-)$1	294	159	166	16.9999
CCUCCCC	chrX:152966210-152966504(-)$1	294	123	130	16.9999
CCUCCCC	chr17:37872406-37872720(+)$1	314	104	111	16.9999
CGUCCCC	chr6:34212862-34213083(+)$1	221	113	120	12.3846
CGUCCCC	chr3:186338367-186338601(+)$1	234	83	90	12.3846
CCUCUCC	chr12:57598849-57599093(+)$1	244	109	116	12.6153
CCUCCAC	chr11:64897373-64897646(-)$1	273	160	167	13.3846
CCUCCCU	chr17:73842630-73842936(-)$1	306	131	138	12.9230
ucucccc	chr17:80708516-80708887(+)$1	371	157	164	12.4615
CCUCCUC	chr7:75614060-75614349(+)$1	289	193	200	13.3846
CCUCCAC	chrX:152955725-152955979(+)$1	254	91	98	13.3846
CCUCGCC	chr19:45411832-45412069(+)$1	237	182	189	12.6923
UCUCCCC	chr19:36640813-36641108(+)$1	295	157	164	12.4615
CCUCUCC	chr22:42273214-42273470(+)$1	256	104	111	12.6153
CCUCCUC	chr12:125284600-125284890(-)$1	290	281	288	13.3846
CCUGCCC	chr11:2154237-2154523(-)$1	286	154	161	12.9999
CCUCACC	chr19:6677781-6678029(-)$1	248	232	239	12.5384
CCUCCCC	chr3:48461198-48461433(-)$1	235	104	111	16.9999
CCUCCUC	chr1:11986188-11986449(-)$1	261	217	224	13.3846
CCUCGCC	chr19:45411986-45412230(+)$1	244	28	35	12.6923
ccuccgc	chr8:145149895-145150169(+)$1	274	259	266	13.2307
CCACCCC	chr17:79915584-79915863(-)$1	279	59	66	13.3846
UCUCCCC	chr11:116707747-116707973(-)$1	226	81	88	12.4615
CCACCCC	chr19:14203527-14203827(-)$1	300	24	31	13.3846
CCUGCCC	chr12:9268260-9268528(-)$1	268	136	143	12.9999
CCUCCUC	chr20:2442226-2442551(-)$1	325	162	169	13.3846
CCUCCCU	chr14:95053738-95053995(+)$1	257	10	17	12.9230
ccgcccc	chrX:152953958-152954215(+)$1	257	17	24	13.0769
CCGCCCC	chrX:152913467-152913745(+)$1	278	153	160	13.0769
CCUCCCU	chr17:80046277-80046509(-)$1	232	55	62	12.9230
CCCCCCC	chr16:29817954-29818179(+)$1	225	99	106	12.9230
CCUCCCU	chr17:42153302-42153604(+)$1	302	120	127	12.9230
CCUCCCC	chr15:90328375-90328699(-)$1	324	224	231	16.9999
CCUGCCC	chr6:31901556-31901810(+)$1	254	16	23	12.9999
CCUGCCC	chr6:42897241-42897501(+)$1	260	198	205	12.9999
CCUCGCC	chr19:45411769-45412025(+)$1	256	245	252	12.6923
CCUCCAC	chr12:53298479-53298795(-)$1	316	10	17	13.3846
CCACCCC	chr16:2817808-2818086(+)$1	278	117	124	13.3846
CCACCCC	chr3:48461369-48461614(-)$1	245	24	31	13.3846
ccucccc	chr20:2816682-2816958(-)$1	276	156	163	16.9999

#otherMatches

#Struct PSSM
C::HHHH	chr12:125292257-125292516(-)$1	259	85	92	12.3076
hhhhhho	chr6:31611764-31612055(-)$1	291	158	165	12.8461
^^^^^^^	chr17:17723517-17723808(-)$1	291	176	183	16.9999
e::::::	chr7:73011586-73011821(-)$1	235	67	74	12.8461
ff:::::	chr2:74653310-74653624(-)$1	314	30	37	12.9999
GGGGccc	chr11:319633-319960(-)$1	327	19	26	13.3846
bbmmmmb	chr1:230841606-230841898(-)$1	292	227	234	12.7692
^^^^^^^	chr19:48894504-48894799(-)$1	295	47	54	16.9999
lllccc3	chr14:101200405-101200669(+)$1	264	127	134	12.7692
VVVVVVV	chr7:73011659-73011938(-)$1	279	18	25	16.9999
gggg333	chr2:220404152-220404376(-)$1	224	76	83	13.3846
bbmmmmb	chr1:230841578-230841806(-)$1	228	135	142	12.7692
cc]accc	chr16:30079903-30080121(+)$1	218	197	204	16.9999
b::::::	chr2:171822199-171822524(+)$1	325	123	130	16.9999
llldddd	chr6:31895698-31896005(+)$1	307	286	293	13.3846
eeeeeac	chr11:2156497-2156699(-)$1	202	23	30	13.0769
bpppppp	chr16:29818395-29818640(+)$1	245	116	123	13.3846
:gggggg	chr5:176524513-176524771(+)$1	258	22	29	13.2307
CCC::::	chr7:100771592-100771854(+)$1	262	20	27	16.9999
[dddd!!	chr20:35827431-35827723(+)$1	292	125	132	12.8461
:::::::	chr6:34212675-34212951(+)$1	276	107	114	13.3846
c!!a!!b	chr17:79826318-79826566(-)$1	248	12	19	13.3846
cc]====	chr12:106641222-106641501(-)$1	279	125	132	13.2307
CCCCCCD	chr11:61048214-61048518(-)$1	304	6	13	16.9999
}EEEEE:	chr19:45452374-45452661(+)$1	287	231	238	12.7692
KKDDDDK	chr11:72425137-72425431(-)$1	294	159	166	16.9999
JJJJJJJ	chrX:152966210-152966504(-)$1	294	123	130	16.9999
d::::::	chr17:37872406-37872720(+)$1	314	104	111	16.9999
"iiiiii	chr6:34212862-34213083(+)$1	221	113	120	12.3846
yyyyyyy	chr3:186338367-186338601(+)$1	234	83	90	12.3846
e"""hhh	chr12:57598849-57599093(+)$1	244	109	116	12.6153
ddsssss	chr11:64897373-64897646(-)$1	273	160	167	13.3846
e::::::	chr17:73842630-73842936(-)$1	306	131	138	12.9230
:::::::	chr17:80708516-80708887(+)$1	371	157	164	12.4615
+++++++	chr7:75614060-75614349(+)$1	289	193	200	13.3846
ffffff"	chrX:152955725-152955979(+)$1	254	91	98	13.3846
ff::DDD	chr19:45411832-45412069(+)$1	237	182	189	12.6923
EE@@@@@	chr19:36640813-36641108(+)$1	295	157	164	12.4615
fffff&&	chr22:42273214-42273470(+)$1	256	104	111	12.6153
FFFFF::	chr12:125284600-125284890(-)$1	290	281	288	13.3846
}FFFFFF	chr11:2154237-2154523(-)$1	286	154	161	12.9999
2ccc]bb	chr19:6677781-6678029(-)$1	248	232	239	12.5384
DD:::::	chr3:48461198-48461433(-)$1	235	104	111	16.9999
EE}AYYE	chr1:11986188-11986449(-)$1	261	217	224	13.3846
lllccc2	chr19:45411986-45412230(+)$1	244	28	35	12.6923
ggg22dd	chr8:145149895-145150169(+)$1	274	259	266	13.2307
ggggggg	chr17:79915584-79915863(-)$1	279	59	66	13.3846
==:::::	chr11:116707747-116707973(-)$1	226	81	88	12.4615
:::::::	chr19:14203527-14203827(-)$1	300	24	31	13.3846
b[ccc%%	chr12:9268260-9268528(-)$1	268	136	143	12.9999
d::DDDD	chr20:2442226-2442551(-)$1	325	162	169	13.3846
GGGGGGG	chr14:95053738-95053995(+)$1	257	10	17	12.9230
cddddqq	chrX:152953958-152954215(+)$1	257	17	24	13.0769
ddd####	chrX:152913467-152913745(+)$1	278	153	160	13.0769
zzzzzzz	chr17:80046277-80046509(-)$1	232	55	62	12.9230
ee:::::	chr16:29817954-29818179(+)$1	225	99	106	12.9230
D::::::	chr17:42153302-42153604(+)$1	302	120	127	12.9230
eeepppp	chr15:90328375-90328699(-)$1	324	224	231	16.9999
CCC{DDD	chr6:31901556-31901810(+)$1	254	16	23	12.9999
cccBB}E	chr6:42897241-42897501(+)$1	260	198	205	12.9999
eEEEEED	chr19:45411769-45412025(+)$1	256	245	252	12.6923
cc:::::	chr12:53298479-53298795(-)$1	316	10	17	13.3846
:FFFFFF	chr16:2817808-2818086(+)$1	278	117	124	13.3846
EE:dddd	chr3:48461369-48461614(-)$1	245	24	31	13.3846
::::::D	chr20:2816682-2816958(-)$1	276	156	163	16.9999

#DB
)..((((	chr12:125292257-125292516(-)$1	1	85	92	12.3076
((((((.	chr6:31611764-31612055(-)$1	1	158	165	12.8461
.......	chr17:17723517-17723808(-)$1	1	176	183	16.9999
)......	chr7:73011586-73011821(-)$1	1	67	74	12.8461
)).....	chr2:74653310-74653624(-)$1	1	30	37	12.9999
(((((((	chr11:319633-319960(-)$1	1	19	26	13.3846
((....)	chr1:230841606-230841898(-)$1	1	227	234	12.7692
.......	chr19:48894504-48894799(-)$1	1	47	54	16.9999
...))).	chr14:101200405-101200669(+)$1	1	127	134	12.7692
.......	chr7:73011659-73011938(-)$1	1	18	25	16.9999
))))...	chr2:220404152-220404376(-)$1	1	76	83	13.3846
((....)	chr1:230841578-230841806(-)$1	1	135	142	12.7692
)).))))	chr16:30079903-30080121(+)$1	1	197	204	16.9999
)......	chr2:171822199-171822524(+)$1	1	123	130	16.9999
...))))	chr6:31895698-31896005(+)$1	1	286	293	13.3846
(((((((	chr11:2156497-2156699(-)$1	1	23	30	13.0769
(......	chr16:29818395-29818640(+)$1	1	116	123	13.3846
.((((((	chr5:176524513-176524771(+)$1	1	22	29	13.2307
(((....	chr7:100771592-100771854(+)$1	1	20	27	16.9999
.((((..	chr20:35827431-35827723(+)$1	1	125	132	12.8461
.......	chr6:34212675-34212951(+)$1	1	107	114	13.3846
(..(..(	chr17:79826318-79826566(-)$1	1	12	19	13.3846
)).))))	chr12:106641222-106641501(-)$1	1	125	132	13.2307
(((((((	chr11:61048214-61048518(-)$1	1	6	13	16.9999
.))))).	chr19:45452374-45452661(+)$1	1	231	238	12.7692
..((((.	chr11:72425137-72425431(-)$1	1	159	166	16.9999
)))))))	chrX:152966210-152966504(-)$1	1	123	130	16.9999
)......	chr17:37872406-37872720(+)$1	1	104	111	16.9999
.((((((	chr6:34212862-34213083(+)$1	1	113	120	12.3846
.......	chr3:186338367-186338601(+)$1	1	83	90	12.3846
(...(((	chr12:57598849-57599093(+)$1	1	109	116	12.6153
((.....	chr11:64897373-64897646(-)$1	1	160	167	13.3846
)......	chr17:73842630-73842936(-)$1	1	131	138	12.9230
.......	chr17:80708516-80708887(+)$1	1	157	164	12.4615
.......	chr7:75614060-75614349(+)$1	1	193	200	13.3846
((((((.	chrX:152955725-152955979(+)$1	1	91	98	13.3846
))..)))	chr19:45411832-45412069(+)$1	1	182	189	12.6923
)).....	chr19:36640813-36641108(+)$1	1	157	164	12.4615
(((((..	chr22:42273214-42273470(+)$1	1	104	111	12.6153
)))))..	chr12:125284600-125284890(-)$1	1	281	288	13.3846
.))))))	chr11:2154237-2154523(-)$1	1	154	161	12.9999
.))).))	chr19:6677781-6678029(-)$1	1	232	239	12.5384
((.....	chr3:48461198-48461433(-)$1	1	104	111	16.9999
)).)..)	chr1:11986188-11986449(-)$1	1	217	224	13.3846
...))).	chr19:45411986-45412230(+)$1	1	28	35	12.6923
)))..))	chr8:145149895-145150169(+)$1	1	259	266	13.2307
(((((((	chr17:79915584-79915863(-)$1	1	59	66	13.3846
)).....	chr11:116707747-116707973(-)$1	1	81	88	12.4615
.......	chr19:14203527-14203827(-)$1	1	24	31	13.3846
(.(((..	chr12:9268260-9268528(-)$1	1	136	143	12.9999
)..))))	chr20:2442226-2442551(-)$1	1	162	169	13.3846
(((((((	chr14:95053738-95053995(+)$1	1	10	17	12.9230
(((((..	chrX:152953958-152954215(+)$1	1	17	24	13.0769
(((....	chrX:152913467-152913745(+)$1	1	153	160	13.0769
.......	chr17:80046277-80046509(-)$1	1	55	62	12.9230
)).....	chr16:29817954-29818179(+)$1	1	99	106	12.9230
(......	chr17:42153302-42153604(+)$1	1	120	127	12.9230
(((....	chr15:90328375-90328699(-)$1	1	224	231	16.9999
(((.(((	chr6:31901556-31901810(+)$1	1	16	23	12.9999
))))).)	chr6:42897241-42897501(+)$1	1	198	205	12.9999
)))))))	chr19:45411769-45412025(+)$1	1	245	252	12.6923
)).....	chr12:53298479-53298795(-)$1	1	10	17	13.3846
.((((((	chr16:2817808-2818086(+)$1	1	117	124	13.3846
((.((((	chr3:48461369-48461614(-)$1	1	24	31	13.3846
......)	chr20:2816682-2816958(-)$1	1	156	163	16.9999

#PSSM
C : 0.84	c : 0.10	U : 0.03	u : 0.01	
C : 0.83	c : 0.12	G : 0.03	A : 0.01	
U : 0.76	u : 0.06	A : 0.06	a : 0.04	G : 0.03	g : 0.01	C : 0.01	
C : 0.75	c : 0.12	G : 0.07	U : 0.04	
C : 0.78	c : 0.12	G : 0.04	U : 0.03	A : 0.01	
C : 0.70	c : 0.09	A : 0.07	U : 0.07	g : 0.03	G : 0.01	
C : 0.75	c : 0.12	U : 0.06	G : 0.03	A : 0.03	

#score	896.9999999999993
#seq	65
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_transcript_m3_run1.nuc.txt

#NT
ACA	chr17:57754418-57754648(+)$1	230	36	39	8.9999
ACA	chr8:48772154-48772391(-)$1	237	14	17	8.9999
ACA	chr2:242174804-242175107(-)$1	303	42	45	8.9999
aca	chr9:35724193-35724431(-)$1	238	0	3	8.9999
ACA	chr11:62296597-62296820(-)$1	223	15	18	8.9999
ACA	chr4:74014504-74014866(-)$1	362	133	136	8.9999
ACA	chr11:62290069-62290326(-)$1	257	37	40	8.9999
ACA	chr1:19446700-19446942(-)$1	242	3	6	8.9999
ACA	chr5:154181645-154181896(+)$1	251	66	69	8.9999
ACA	chr1:19490646-19490870(-)$1	224	153	156	8.9999
ACA	chr11:62297569-62297823(-)$1	254	7	10	8.9999
ACA	chr2:44206947-44207187(-)$1	240	96	99	8.9999
ACA	chr22:23630183-23630460(+)$1	277	104	107	8.9999
ACA	chr11:62299926-62300176(-)$1	250	55	58	8.9999
ACA	chr19:47424780-47425072(+)$1	292	129	132	8.9999
ACA	chr14:102548642-102548881(-)$1	239	27	30	8.9999
ACA	chr5:71493262-71493519(+)$1	257	172	175	8.9999
ACA	chr2:54871530-54871788(+)$1	258	34	37	8.9999
ACA	chr17:1577738-1577980(-)$1	242	7	10	8.9999
ACA	chr17:7414712-7414972(+)$1	260	8	11	8.9999
ACA	chrX:41076373-41076603(+)$1	230	0	3	8.9999
ACA	chr5:37351281-37351556(-)$1	275	13	16	8.9999
ACA	chr15:63932279-63932553(-)$1	274	22	25	8.9999
ACA	chrX:53589745-53589989(-)$1	244	19	22	8.9999
ACA	chrX:153583193-153583464(-)$1	271	78	81	8.9999
ACA	chr8:48800978-48801181(-)$1	203	20	23	8.9999
ACA	chr14:102505683-102505947(+)$1	264	67	70	8.9999
ACA	chr1:19503047-19503314(-)$1	267	95	98	8.9999
ACA	chrM:12055-12300(+)$1	245	5	8	8.9999
ACA	chrX:53596563-53596813(-)$1	250	67	70	8.9999
ACA	chrX:153585809-153586063(-)$1	254	66	69	8.9999
ACA	chr2:61715622-61715875(-)$1	253	26	29	8.9999
ACA	chr1:19505492-19505732(-)$1	240	19	22	8.9999
ACA	chr17:57746149-57746387(+)$1	238	205	208	8.9999
ACA	chr10:71148853-71149105(+)$1	252	25	28	8.9999
ACA	chr5:71495143-71495462(+)$1	319	34	37	8.9999
ACA	chr17:1582814-1583060(-)$1	246	37	40	8.9999
ACA	chr12:111159858-111160173(-)$1	315	7	10	8.9999
ACA	chr5:145537007-145537274(-)$1	267	37	40	8.9999
ACA	chr17:26951217-26951493(-)$1	276	91	94	8.9999
ACA	chr11:120350770-120351054(+)$1	284	8	11	8.9999
ACA	chr17:78321631-78321926(+)$1	295	33	36	8.9999
ACA	chr17:57756657-57756886(+)$1	229	9	12	8.9999
ACA	chr21:30699098-30699445(+)$1	347	24	27	8.9999
ACA	chr11:62296659-62296917(-)$1	258	8	11	8.9999
ACA	chrX:123182797-123183028(+)$1	231	24	27	8.9999
ACA	chr5:118485828-118486118(+)$1	290	74	77	8.9999
ACA	chr7:72903424-72903667(-)$1	243	139	142	8.9999
ACA	chr17:26961882-26962208(-)$1	326	156	159	8.9999
ACA	chr6:168311936-168312214(+)$1	278	23	26	8.9999
ACA	chr6:31753281-31753557(-)$1	276	43	46	8.9999
ACA	chr17:45747982-45748231(+)$1	249	61	64	8.9999
ACA	chr21:34922944-34923213(+)$1	269	20	23	8.9999
ACA	chrX:153583150-153583381(-)$1	231	97	100	8.9999
ACA	chr2:32655835-32656126(+)$1	291	61	64	8.9999
ACA	chr11:62298041-62298288(-)$1	247	5	8	8.9999
ACA	chr2:183866753-183867002(-)$1	249	23	26	8.9999
ACA	chr1:19493574-19493807(-)$1	233	106	109	8.9999
ACA	chr21:34922333-34922601(+)$1	268	47	50	8.9999
ACA	chr9:35720739-35720992(-)$1	253	117	120	8.9999
ACA	chr14:31585392-31585692(-)$1	300	102	105	8.9999
ACA	chr1:19500803-19501041(-)$1	238	157	160	8.9999
ACA	chr5:154172183-154172416(+)$1	233	0	3	8.9999
ACA	chr8:48801560-48801808(-)$1	248	11	14	8.9999
ACA	chr3:9512269-9512566(+)$1	297	43	46	8.9999
ACA	chr12:116423970-116424229(-)$1	259	235	238	8.9999
ACA	chr8:48772071-48772288(-)$1	217	7	10	8.9999
ACA	chr17:38556107-38556334(-)$1	227	52	55	8.9999
ACA	chr8:48800007-48800236(-)$1	229	47	50	8.9999
ACA	chr7:157023716-157024074(+)$1	358	19	22	8.9999
ACA	chr17:78306011-78306290(+)$1	279	76	79	8.9999
ACA	chr17:57756686-57756922(+)$1	236	171	174	8.9999
ACA	chr17:78343225-78343524(+)$1	299	39	42	8.9999
ACA	chr1:19499892-19500169(-)$1	277	127	130	8.9999
ACA	chr2:54147933-54148285(-)$1	352	115	118	8.9999
ACA	chrX:153588154-153588366(-)$1	212	43	46	8.9999
ACA	chr9:134454839-134455102(-)$1	263	28	31	8.9999
ACA	chr15:62254862-62255148(-)$1	286	81	84	8.9999
ACA	chr19:59060406-59060651(+)$1	245	30	33	8.9999
ACA	chrX:41055744-41055983(+)$1	239	103	106	8.9999
ACA	chr7:128486292-128486563(+)$1	271	25	28	8.9999
ACA	chrX:153587804-153588048(-)$1	244	166	169	8.9999
ACA	chr3:47719590-47719882(-)$1	292	25	28	8.9999
ACA	chrX:153578388-153578617(-)$1	229	18	21	8.9999
ACA	chr17:1576277-1576535(-)$1	258	16	19	8.9999
ACA	chr10:120824835-120825092(-)$1	257	112	115	8.9999
ACA	chr11:62297627-62297903(-)$1	276	87	90	8.9999
ACA	chr9:95042944-95043221(-)$1	277	19	22	8.9999
ACA	chr1:55604184-55604466(-)$1	282	4	7	8.9999
ACA	chr17:1581774-1582026(-)$1	252	141	144	8.9999
ACA	chr17:57759045-57759299(+)$1	254	122	125	8.9999
ACA	chr2:96952756-96952997(-)$1	241	23	26	8.9999
ACA	chr9:133748165-133748411(+)$1	246	19	22	8.9999
ACA	chrX:153581583-153581854(-)$1	271	1	4	8.9999
ACA	chr1:236727711-236727954(-)$1	243	33	36	8.9999

#otherMatches

#Struct PSSM
eeb	chr16:58590672-58590927(-)$1	255	44	47	8.9999
MMM	chr17:57754418-57754648(+)$1	230	36	39	8.9999
eee	chr8:48772154-48772391(-)$1	237	14	17	8.9999
GLL	chr2:242174804-242175107(-)$1	303	42	45	8.9999
:::	chr9:35724193-35724431(-)$1	238	0	3	8.9999
III	chr11:62296597-62296820(-)$1	223	15	18	8.9999
ddd	chr4:74014504-74014866(-)$1	362	133	136	8.9999
HHH	chr11:62290069-62290326(-)$1	257	37	40	8.9999
coo	chr1:19446700-19446942(-)$1	242	3	6	8.9999
nnn	chr5:154181645-154181896(+)$1	251	66	69	8.9999
fff	chr1:19490646-19490870(-)$1	224	153	156	8.9999
EEE	chr11:62297569-62297823(-)$1	254	7	10	8.9999
ccc	chr2:44206947-44207187(-)$1	240	96	99	8.9999
$gg	chr22:23630183-23630460(+)$1	277	104	107	8.9999
hhh	chr11:62299926-62300176(-)$1	250	55	58	8.9999
JJJ	chr19:47424780-47425072(+)$1	292	129	132	8.9999
pii	chr14:102548642-102548881(-)$1	239	27	30	8.9999
g::	chr5:71493262-71493519(+)$1	257	172	175	8.9999
!ee	chr2:54871530-54871788(+)$1	258	34	37	8.9999
C::	chr17:1577738-1577980(-)$1	242	7	10	8.9999
$gg	chr17:7414712-7414972(+)$1	260	8	11	8.9999
:::	chrX:41076373-41076603(+)$1	230	0	3	8.9999
mmm	chr5:37351281-37351556(-)$1	275	13	16	8.9999
:::	chr15:63932279-63932553(-)$1	274	22	25	8.9999
c]c	chrX:53589745-53589989(-)$1	244	19	22	8.9999
DNN	chrX:153583193-153583464(-)$1	271	78	81	8.9999
2dd	chr8:48800978-48801181(-)$1	203	20	23	8.9999
%%%	chr14:102505683-102505947(+)$1	264	67	70	8.9999
ffd	chr1:19503047-19503314(-)$1	267	95	98	8.9999
:::	chrM:12055-12300(+)$1	245	5	8	8.9999
^^^	chrX:53596563-53596813(-)$1	250	67	70	8.9999
$$$	chrX:153585809-153586063(-)$1	254	66	69	8.9999
PPP	chr2:61715622-61715875(-)$1	253	26	29	8.9999
{BB	chr1:19505492-19505732(-)$1	240	19	22	8.9999
ff3	chr17:57746149-57746387(+)$1	238	205	208	8.9999
qcc	chr10:71148853-71149105(+)$1	252	25	28	8.9999
[bb	chr5:71495143-71495462(+)$1	319	34	37	8.9999
EEE	chr17:1582814-1583060(-)$1	246	37	40	8.9999
HHH	chr12:111159858-111160173(-)$1	315	7	10	8.9999
44e	chr5:145537007-145537274(-)$1	267	37	40	8.9999
[aq	chr17:26951217-26951493(-)$1	276	91	94	8.9999
KDD	chr11:120350770-120351054(+)$1	284	8	11	8.9999
:ii	chr17:78321631-78321926(+)$1	295	33	36	8.9999
::e	chr17:57756657-57756886(+)$1	229	9	12	8.9999
:cc	chr21:30699098-30699445(+)$1	347	24	27	8.9999
:EE	chr11:62296659-62296917(-)$1	258	8	11	8.9999
%%%	chrX:123182797-123183028(+)$1	231	24	27	8.9999
ddd	chr5:118485828-118486118(+)$1	290	74	77	8.9999
pdd	chr7:72903424-72903667(-)$1	243	139	142	8.9999
dd]	chr17:26961882-26962208(-)$1	326	156	159	8.9999
EEE	chr6:168311936-168312214(+)$1	278	23	26	8.9999
:dd	chr6:31753281-31753557(-)$1	276	43	46	8.9999
7ff	chr17:45747982-45748231(+)$1	249	61	64	8.9999
FFF	chr21:34922944-34923213(+)$1	269	20	23	8.9999
fff	chrX:153583150-153583381(-)$1	231	97	100	8.9999
:::	chr2:32655835-32656126(+)$1	291	61	64	8.9999
:EE	chr11:62298041-62298288(-)$1	247	5	8	8.9999
oee	chr2:183866753-183867002(-)$1	249	23	26	8.9999
CCC	chr1:19493574-19493807(-)$1	233	106	109	8.9999
nnn	chr21:34922333-34922601(+)$1	268	47	50	8.9999
ppp	chr9:35720739-35720992(-)$1	253	117	120	8.9999
bb[	chr14:31585392-31585692(-)$1	300	102	105	8.9999
odd	chr1:19500803-19501041(-)$1	238	157	160	8.9999
:EE	chr5:154172183-154172416(+)$1	233	0	3	8.9999
&&&	chr8:48801560-48801808(-)$1	248	11	14	8.9999
:::	chr3:9512269-9512566(+)$1	297	43	46	8.9999
iim	chr12:116423970-116424229(-)$1	259	235	238	8.9999
FKK	chr8:48772071-48772288(-)$1	217	7	10	8.9999
ooo	chr17:38556107-38556334(-)$1	227	52	55	8.9999
ddl	chr8:48800007-48800236(-)$1	229	47	50	8.9999
III	chr7:157023716-157024074(+)$1	358	19	22	8.9999
nnn	chr17:78306011-78306290(+)$1	279	76	79	8.9999
ggg	chr17:57756686-57756922(+)$1	236	171	174	8.9999
fff	chr17:78343225-78343524(+)$1	299	39	42	8.9999
ggg	chr1:19499892-19500169(-)$1	277	127	130	8.9999
ddd	chr2:54147933-54148285(-)$1	352	115	118	8.9999
!a[	chrX:153588154-153588366(-)$1	212	43	46	8.9999
NNN	chr9:134454839-134455102(-)$1	263	28	31	8.9999
555	chr15:62254862-62255148(-)$1	286	81	84	8.9999
cmm	chr19:59060406-59060651(+)$1	245	30	33	8.9999
:::	chrX:41055744-41055983(+)$1	239	103	106	8.9999
b!!	chr7:128486292-128486563(+)$1	271	25	28	8.9999
^^^	chrX:153587804-153588048(-)$1	244	166	169	8.9999
NNN	chr3:47719590-47719882(-)$1	292	25	28	8.9999
iii	chrX:153578388-153578617(-)$1	229	18	21	8.9999
FFF	chr17:1576277-1576535(-)$1	258	16	19	8.9999
ndd	chr10:120824835-120825092(-)$1	257	112	115	8.9999
]dd	chr11:62297627-62297903(-)$1	276	87	90	8.9999
fff	chr9:95042944-95043221(-)$1	277	19	22	8.9999
:::	chr1:55604184-55604466(-)$1	282	4	7	8.9999
qqq	chr17:1581774-1582026(-)$1	252	141	144	8.9999
qqq	chr17:57759045-57759299(+)$1	254	122	125	8.9999
:::	chr2:96952756-96952997(-)$1	241	23	26	8.9999
:ff	chr9:133748165-133748411(+)$1	246	19	22	8.9999
:BB	chrX:153581583-153581854(-)$1	271	1	4	8.9999
ggg	chr1:236727711-236727954(-)$1	243	33	36	8.9999

#DB
(((	chr16:58590672-58590927(-)$1	1	44	47	8.9999
...	chr17:57754418-57754648(+)$1	1	36	39	8.9999
(((	chr8:48772154-48772391(-)$1	1	14	17	8.9999
(..	chr2:242174804-242175107(-)$1	1	42	45	8.9999
...	chr9:35724193-35724431(-)$1	1	0	3	8.9999
(((	chr11:62296597-62296820(-)$1	1	15	18	8.9999
)))	chr4:74014504-74014866(-)$1	1	133	136	8.9999
(((	chr11:62290069-62290326(-)$1	1	37	40	8.9999
(..	chr1:19446700-19446942(-)$1	1	3	6	8.9999
...	chr5:154181645-154181896(+)$1	1	66	69	8.9999
)))	chr1:19490646-19490870(-)$1	1	153	156	8.9999
(((	chr11:62297569-62297823(-)$1	1	7	10	8.9999
)))	chr2:44206947-44207187(-)$1	1	96	99	8.9999
.((	chr22:23630183-23630460(+)$1	1	104	107	8.9999
)))	chr11:62299926-62300176(-)$1	1	55	58	8.9999
(((	chr19:47424780-47425072(+)$1	1	129	132	8.9999
.))	chr14:102548642-102548881(-)$1	1	27	30	8.9999
)..	chr5:71493262-71493519(+)$1	1	172	175	8.9999
.((	chr2:54871530-54871788(+)$1	1	34	37	8.9999
(..	chr17:1577738-1577980(-)$1	1	7	10	8.9999
.((	chr17:7414712-7414972(+)$1	1	8	11	8.9999
...	chrX:41076373-41076603(+)$1	1	0	3	8.9999
...	chr5:37351281-37351556(-)$1	1	13	16	8.9999
...	chr15:63932279-63932553(-)$1	1	22	25	8.9999
).)	chrX:53589745-53589989(-)$1	1	19	22	8.9999
(..	chrX:153583193-153583464(-)$1	1	78	81	8.9999
.))	chr8:48800978-48801181(-)$1	1	20	23	8.9999
...	chr14:102505683-102505947(+)$1	1	67	70	8.9999
))(	chr1:19503047-19503314(-)$1	1	95	98	8.9999
...	chrM:12055-12300(+)$1	1	5	8	8.9999
...	chrX:53596563-53596813(-)$1	1	67	70	8.9999
...	chrX:153585809-153586063(-)$1	1	66	69	8.9999
...	chr2:61715622-61715875(-)$1	1	26	29	8.9999
.((	chr1:19505492-19505732(-)$1	1	19	22	8.9999
)).	chr17:57746149-57746387(+)$1	1	205	208	8.9999
.))	chr10:71148853-71149105(+)$1	1	25	28	8.9999
.((	chr5:71495143-71495462(+)$1	1	34	37	8.9999
(((	chr17:1582814-1583060(-)$1	1	37	40	8.9999
(((	chr12:111159858-111160173(-)$1	1	7	10	8.9999
..)	chr5:145537007-145537274(-)$1	1	37	40	8.9999
.(.	chr17:26951217-26951493(-)$1	1	91	94	8.9999
.((	chr11:120350770-120351054(+)$1	1	8	11	8.9999
.((	chr17:78321631-78321926(+)$1	1	33	36	8.9999
..(	chr17:57756657-57756886(+)$1	1	9	12	8.9999
.((	chr21:30699098-30699445(+)$1	1	24	27	8.9999
.((	chr11:62296659-62296917(-)$1	1	8	11	8.9999
...	chrX:123182797-123183028(+)$1	1	24	27	8.9999
)))	chr5:118485828-118486118(+)$1	1	74	77	8.9999
.))	chr7:72903424-72903667(-)$1	1	139	142	8.9999
)).	chr17:26961882-26962208(-)$1	1	156	159	8.9999
(((	chr6:168311936-168312214(+)$1	1	23	26	8.9999
.((	chr6:31753281-31753557(-)$1	1	43	46	8.9999
.))	chr17:45747982-45748231(+)$1	1	61	64	8.9999
(((	chr21:34922944-34923213(+)$1	1	20	23	8.9999
)))	chrX:153583150-153583381(-)$1	1	97	100	8.9999
...	chr2:32655835-32656126(+)$1	1	61	64	8.9999
.((	chr11:62298041-62298288(-)$1	1	5	8	8.9999
.))	chr2:183866753-183867002(-)$1	1	23	26	8.9999
)))	chr1:19493574-19493807(-)$1	1	106	109	8.9999
...	chr21:34922333-34922601(+)$1	1	47	50	8.9999
...	chr9:35720739-35720992(-)$1	1	117	120	8.9999
((.	chr14:31585392-31585692(-)$1	1	102	105	8.9999
.))	chr1:19500803-19501041(-)$1	1	157	160	8.9999
.((	chr5:154172183-154172416(+)$1	1	0	3	8.9999
...	chr8:48801560-48801808(-)$1	1	11	14	8.9999
...	chr3:9512269-9512566(+)$1	1	43	46	8.9999
((.	chr12:116423970-116424229(-)$1	1	235	238	8.9999
(..	chr8:48772071-48772288(-)$1	1	7	10	8.9999
...	chr17:38556107-38556334(-)$1	1	52	55	8.9999
((.	chr8:48800007-48800236(-)$1	1	47	50	8.9999
(((	chr7:157023716-157024074(+)$1	1	19	22	8.9999
...	chr17:78306011-78306290(+)$1	1	76	79	8.9999
)))	chr17:57756686-57756922(+)$1	1	171	174	8.9999
(((	chr17:78343225-78343524(+)$1	1	39	42	8.9999
(((	chr1:19499892-19500169(-)$1	1	127	130	8.9999
)))	chr2:54147933-54148285(-)$1	1	115	118	8.9999
.(.	chrX:153588154-153588366(-)$1	1	43	46	8.9999
...	chr9:134454839-134455102(-)$1	1	28	31	8.9999
...	chr15:62254862-62255148(-)$1	1	81	84	8.9999
(..	chr19:59060406-59060651(+)$1	1	30	33	8.9999
...	chrX:41055744-41055983(+)$1	1	103	106	8.9999
(..	chr7:128486292-128486563(+)$1	1	25	28	8.9999
...	chrX:153587804-153588048(-)$1	1	166	169	8.9999
...	chr3:47719590-47719882(-)$1	1	25	28	8.9999
(((	chrX:153578388-153578617(-)$1	1	18	21	8.9999
(((	chr17:1576277-1576535(-)$1	1	16	19	8.9999
.))	chr10:120824835-120825092(-)$1	1	112	115	8.9999
.))	chr11:62297627-62297903(-)$1	1	87	90	8.9999
)))	chr9:95042944-95043221(-)$1	1	19	22	8.9999
...	chr1:55604184-55604466(-)$1	1	4	7	8.9999
...	chr17:1581774-1582026(-)$1	1	141	144	8.9999
...	chr17:57759045-57759299(+)$1	1	122	125	8.9999
...	chr2:96952756-96952997(-)$1	1	23	26	8.9999
.((	chr9:133748165-133748411(+)$1	1	19	22	8.9999
.((	chrX:153581583-153581854(-)$1	1	1	4	8.9999
(((	chr1:236727711-236727954(-)$1	1	33	36	8.9999

#PSSM
A : 0.98	a : 0.01	
C : 0.98	c : 0.01	
A : 0.98	a : 0.01	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_transcript_m1_run1.nuc.txt

#NT
GGGAG	chr12:6645559-6645798(+)$1	239	24	29	14.9999
gggag	chr20:60962076-60962292(+)$1	216	162	167	14.9999
gggag	chr11:85779915-85780219(-)$1	304	15	20	14.9999
gggag	chr4:56963491-56963728(+)$1	237	148	153	14.9999
GGGAG	chr11:18548268-18548566(-)$1	298	182	187	14.9999
GGGAG	chr6:26158312-26158602(+)$1	290	30	35	14.9999
GGGAG	chr4:100871265-100871530(-)$1	265	73	78	14.9999
GGGAG	chr6:27775856-27776113(+)$1	257	151	156	14.9999
GGGAG	chr8:74204911-74205132(-)$1	221	37	42	14.9999
GGGAG	chr22:20110909-20111260(+)$1	351	220	225	14.9999
GGGAG	chr1:109642821-109643025(+)$1	204	3	8	14.9999
GGGAG	chr11:63742000-63742245(+)$1	245	2	7	14.9999
GGGAG	chr1:111991988-111992304(+)$1	316	281	286	14.9999
GGGAG	chr6:26285544-26285845(-)$1	301	156	161	14.9999
GGGAG	chr19:47731985-47732287(-)$1	302	95	100	14.9999
GGGAG	chr15:63449498-63449762(-)$1	264	120	125	14.9999
GGGAG	chr11:122932670-122932931(-)$1	261	195	200	14.9999
gggag	chr8:28387857-28388118(+)$1	261	154	159	14.9999
GGGAG	chr17:26903758-26904015(-)$1	257	23	28	14.9999
GGGAG	chr10:7830042-7830320(+)$1	278	50	55	14.9999
GGGAG	chr1:26232785-26233010(-)$1	225	193	198	14.9999
GGGAG	chr7:98479274-98479516(+)$1	242	145	150	14.9999
GGGAG	chr2:98262431-98262750(+)$1	319	12	17	14.9999
GGGAG	chr17:26903718-26903958(-)$1	240	55	60	14.9999
GGGAG	chr15:41576109-41576408(+)$1	299	166	171	14.9999
GGGAG	chr1:46049624-46049885(+)$1	261	18	23	14.9999
GGGAG	chr7:5569906-5570151(-)$1	245	136	141	14.9999
GGGAG	chr20:42295774-42296004(+)$1	230	181	186	14.9999
GGGAG	chr11:65211480-65211747(+)$1	267	109	114	14.9999
GGGAG	chr6:31703977-31704257(-)$1	280	14	19	14.9999
GGGAG	chr11:63448939-63449226(+)$1	287	253	258	14.9999
GGGAG	chr5:1801446-1801708(+)$1	262	191	196	14.9999
GGGAG	chr19:45981760-45981976(-)$1	216	177	182	14.9999
GGGAG	chr5:132202239-132202480(+)$1	241	181	186	14.9999
GGGAG	chr12:6976647-6976905(+)$1	258	150	155	14.9999
GGGAG	chr12:56122635-56122890(-)$1	255	2	7	14.9999
GGGAG	chr2:231577593-231577913(+)$1	320	15	20	14.9999
GGGAG	chr3:23958537-23958766(+)$1	229	19	24	14.9999
GGGAG	chr15:64385842-64386171(-)$1	329	275	280	14.9999
GGGAG	chr12:49523373-49523606(-)$1	233	159	164	14.9999
GGGAG	chr19:45981776-45982009(-)$1	233	210	215	14.9999
GGGAG	chr12:111180546-111180789(-)$1	243	111	116	14.9999
gggag	chrX:68892266-68892515(+)$1	249	140	145	14.9999
GGGAG	chr11:67351841-67352102(+)$1	261	223	228	14.9999
gggag	chr12:104518970-104519184(+)$1	214	127	132	14.9999
GGGAG	chr1:109642766-109642971(+)$1	205	0	5	14.9999
GGGAG	chr10:105156063-105156305(-)$1	242	58	63	14.9999
GGGAG	chr6:88411577-88411847(-)$1	270	152	157	14.9999
GGGAG	chrX:77359649-77359902(+)$1	253	44	49	14.9999
GGGAG	chr19:49999594-49999824(+)$1	230	195	200	14.9999
GGGAG	chr1:987792-988140(+)$1	348	79	84	14.9999
GGGAG	chr20:2451244-2451532(-)$1	288	131	136	14.9999
GGGAG	chr11:17099065-17099318(-)$1	253	193	198	14.9999
GGGAG	chr12:111180494-111180746(-)$1	252	68	73	14.9999
GGGAG	chr12:96252645-96252923(+)$1	278	63	68	14.9999
GGGAG	chr2:176046283-176046528(-)$1	245	161	166	14.9999
GGGAG	chr19:36139135-36139405(+)$1	270	25	30	14.9999
GGGAG	chr1:26232779-26232985(-)$1	206	168	173	14.9999
GGGAG	chr6:31704057-31704309(-)$1	252	16	21	14.9999
GGGAG	chr7:25164717-25164985(-)$1	268	37	42	14.9999
gggag	chr8:30669989-30670286(-)$1	297	247	252	14.9999
GGGAG	chr4:103748513-103748787(-)$1	274	50	55	14.9999

#otherMatches

#Struct PSSM
mffff	chr17:72199765-72199985(+)$1	220	15	20	14.9999
iiiii	chr12:6645559-6645798(+)$1	239	24	29	14.9999
FFFBB	chr20:60962076-60962292(+)$1	216	162	167	14.9999
FFKKA	chr11:85779915-85780219(-)$1	304	15	20	14.9999
]cccb	chr4:56963491-56963728(+)$1	237	148	153	14.9999
JJJJJ	chr11:18548268-18548566(-)$1	298	182	187	14.9999
iiiii	chr6:26158312-26158602(+)$1	290	30	35	14.9999
))ggg	chr4:100871265-100871530(-)$1	265	73	78	14.9999
ggggg	chr6:27775856-27776113(+)$1	257	151	156	14.9999
BRRRR	chr8:74204911-74205132(-)$1	221	37	42	14.9999
lffff	chr22:20110909-20111260(+)$1	351	220	225	14.9999
ccqqq	chr1:109642821-109643025(+)$1	204	3	8	14.9999
ggggg	chr11:63742000-63742245(+)$1	245	2	7	14.9999
EEZZZ	chr1:111991988-111992304(+)$1	316	281	286	14.9999
22fff	chr6:26285544-26285845(-)$1	301	156	161	14.9999
ccca[	chr19:47731985-47732287(-)$1	302	95	100	14.9999
IIIII	chr15:63449498-63449762(-)$1	264	120	125	14.9999
==ddd	chr11:122932670-122932931(-)$1	261	195	200	14.9999
cbbcc	chr8:28387857-28388118(+)$1	261	154	159	14.9999
ddd:=	chr17:26903758-26904015(-)$1	257	23	28	14.9999
ee!!a	chr10:7830042-7830320(+)$1	278	50	55	14.9999
ccc[b	chr1:26232785-26233010(-)$1	225	193	198	14.9999
ddd:d	chr7:98479274-98479516(+)$1	242	145	150	14.9999
D{A{A	chr2:98262431-98262750(+)$1	319	12	17	14.9999
ddIII	chr17:26903718-26903958(-)$1	240	55	60	14.9999
g::::	chr15:41576109-41576408(+)$1	299	166	171	14.9999
ffBB{	chr1:46049624-46049885(+)$1	261	18	23	14.9999
b]ccc	chr7:5569906-5570151(-)$1	245	136	141	14.9999
ggggg	chr20:42295774-42296004(+)$1	230	181	186	14.9999
=====	chr11:65211480-65211747(+)$1	267	109	114	14.9999
DDDgg	chr6:31703977-31704257(-)$1	280	14	19	14.9999
edddd	chr11:63448939-63449226(+)$1	287	253	258	14.9999
ddd[f	chr5:1801446-1801708(+)$1	262	191	196	14.9999
ddhhh	chr19:45981760-45981976(-)$1	216	177	182	14.9999
ffmmm	chr5:132202239-132202480(+)$1	241	181	186	14.9999
AA}BB	chr12:6976647-6976905(+)$1	258	150	155	14.9999
::A{D	chr12:56122635-56122890(-)$1	255	2	7	14.9999
ddd!!	chr2:231577593-231577913(+)$1	320	15	20	14.9999
HHHHH	chr3:23958537-23958766(+)$1	229	19	24	14.9999
eee[e	chr15:64385842-64386171(-)$1	329	275	280	14.9999
eee55	chr12:49523373-49523606(-)$1	233	159	164	14.9999
ddhhh	chr19:45981776-45982009(-)$1	233	210	215	14.9999
ddddh	chr12:111180546-111180789(-)$1	243	111	116	14.9999
]bb::	chrX:68892266-68892515(+)$1	249	140	145	14.9999
EEE}H	chr11:67351841-67352102(+)$1	261	223	228	14.9999
EEEEe	chr12:104518970-104519184(+)$1	214	127	132	14.9999
:::::	chr1:109642766-109642971(+)$1	205	0	5	14.9999
Ieeee	chr10:105156063-105156305(-)$1	242	58	63	14.9999
f[ccc	chr6:88411577-88411847(-)$1	270	152	157	14.9999
effff	chrX:77359649-77359902(+)$1	253	44	49	14.9999
III:d	chr19:49999594-49999824(+)$1	230	195	200	14.9999
:::::	chr1:987792-988140(+)$1	348	79	84	14.9999
ddd22	chr20:2451244-2451532(-)$1	288	131	136	14.9999
fffff	chr11:17099065-17099318(-)$1	253	193	198	14.9999
ddddh	chr12:111180494-111180746(-)$1	252	68	73	14.9999
beeee	chr12:96252645-96252923(+)$1	278	63	68	14.9999
ccc:F	chr2:176046283-176046528(-)$1	245	161	166	14.9999
fffff	chr19:36139135-36139405(+)$1	270	25	30	14.9999
fff[c	chr1:26232779-26232985(-)$1	206	168	173	14.9999
ccppp	chr6:31704057-31704309(-)$1	252	16	21	14.9999
mmmmd	chr7:25164717-25164985(-)$1	268	37	42	14.9999
ccc]d	chr8:30669989-30670286(-)$1	297	247	252	14.9999
dd"""	chr4:103748513-103748787(-)$1	274	50	55	14.9999

#DB
.))))	chr17:72199765-72199985(+)$1	1	15	20	14.9999
(((((	chr12:6645559-6645798(+)$1	1	24	29	14.9999
)))))	chr20:60962076-60962292(+)$1	1	162	167	14.9999
((..(	chr11:85779915-85780219(-)$1	1	15	20	14.9999
.))))	chr4:56963491-56963728(+)$1	1	148	153	14.9999
(((((	chr11:18548268-18548566(-)$1	1	182	187	14.9999
(((((	chr6:26158312-26158602(+)$1	1	30	35	14.9999
..(((	chr4:100871265-100871530(-)$1	1	73	78	14.9999
(((((	chr6:27775856-27776113(+)$1	1	151	156	14.9999
(....	chr8:74204911-74205132(-)$1	1	37	42	14.9999
.))))	chr22:20110909-20111260(+)$1	1	220	225	14.9999
((...	chr1:109642821-109643025(+)$1	1	3	8	14.9999
(((((	chr11:63742000-63742245(+)$1	1	2	7	14.9999
))...	chr1:111991988-111992304(+)$1	1	281	286	14.9999
..)))	chr6:26285544-26285845(-)$1	1	156	161	14.9999
((((.	chr19:47731985-47732287(-)$1	1	95	100	14.9999
)))))	chr15:63449498-63449762(-)$1	1	120	125	14.9999
))(((	chr11:122932670-122932931(-)$1	1	195	200	14.9999
(((((	chr8:28387857-28388118(+)$1	1	154	159	14.9999
))).(	chr17:26903758-26904015(-)$1	1	23	28	14.9999
((..(	chr10:7830042-7830320(+)$1	1	50	55	14.9999
(((.(	chr1:26232785-26233010(-)$1	1	193	198	14.9999
))).(	chr7:98479274-98479516(+)$1	1	145	150	14.9999
(.(.(	chr2:98262431-98262750(+)$1	1	12	17	14.9999
))(((	chr17:26903718-26903958(-)$1	1	55	60	14.9999
)....	chr15:41576109-41576408(+)$1	1	166	171	14.9999
))((.	chr1:46049624-46049885(+)$1	1	18	23	14.9999
).)))	chr7:5569906-5570151(-)$1	1	136	141	14.9999
(((((	chr20:42295774-42296004(+)$1	1	181	186	14.9999
)))))	chr11:65211480-65211747(+)$1	1	109	114	14.9999
(((((	chr6:31703977-31704257(-)$1	1	14	19	14.9999
)))))	chr11:63448939-63449226(+)$1	1	253	258	14.9999
(((.(	chr5:1801446-1801708(+)$1	1	191	196	14.9999
)))))	chr19:45981760-45981976(-)$1	1	177	182	14.9999
((...	chr5:132202239-132202480(+)$1	1	181	186	14.9999
)).))	chr12:6976647-6976905(+)$1	1	150	155	14.9999
..(.(	chr12:56122635-56122890(-)$1	1	2	7	14.9999
(((..	chr2:231577593-231577913(+)$1	1	15	20	14.9999
(((((	chr3:23958537-23958766(+)$1	1	19	24	14.9999
(((.(	chr15:64385842-64386171(-)$1	1	275	280	14.9999
)))..	chr12:49523373-49523606(-)$1	1	159	164	14.9999
)))))	chr19:45981776-45982009(-)$1	1	210	215	14.9999
)))))	chr12:111180546-111180789(-)$1	1	111	116	14.9999
.))..	chrX:68892266-68892515(+)$1	1	140	145	14.9999
))).)	chr11:67351841-67352102(+)$1	1	223	228	14.9999
(((((	chr12:104518970-104519184(+)$1	1	127	132	14.9999
.....	chr1:109642766-109642971(+)$1	1	0	5	14.9999
(((((	chr10:105156063-105156305(-)$1	1	58	63	14.9999
(.(((	chr6:88411577-88411847(-)$1	1	152	157	14.9999
(((((	chrX:77359649-77359902(+)$1	1	44	49	14.9999
))).(	chr19:49999594-49999824(+)$1	1	195	200	14.9999
.....	chr1:987792-988140(+)$1	1	79	84	14.9999
)))..	chr20:2451244-2451532(-)$1	1	131	136	14.9999
)))))	chr11:17099065-17099318(-)$1	1	193	198	14.9999
)))))	chr12:111180494-111180746(-)$1	1	68	73	14.9999
)))))	chr12:96252645-96252923(+)$1	1	63	68	14.9999
))).)	chr2:176046283-176046528(-)$1	1	161	166	14.9999
)))))	chr19:36139135-36139405(+)$1	1	25	30	14.9999
(((.(	chr1:26232779-26232985(-)$1	1	168	173	14.9999
((...	chr6:31704057-31704309(-)$1	1	16	21	14.9999
....)	chr7:25164717-25164985(-)$1	1	37	42	14.9999
))).)	chr8:30669989-30670286(-)$1	1	247	252	14.9999
((...	chr4:103748513-103748787(-)$1	1	50	55	14.9999

#PSSM
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
A : 0.88	a : 0.11	
G : 0.88	g : 0.11	

#score	944.9999999999995
#seq	63
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_CDS_m1_run2.nuc.txt

#NT
GGA	chr1:245018788-245019011(-)$1	223	10	13	9.0000
GGA	chr9:117014773-117015022(+)$1	249	17	20	9.0000
GGA	chr11:67810715-67811052(+)$1	337	71	74	9.0000
GGA	chr22:41545777-41546099(+)$1	322	48	51	9.0000
GGA	chr2:220435706-220435980(-)$1	274	43	46	9.0000
GGA	chr4:1806517-1806754(+)$1	237	41	44	9.0000
GGA	chr1:35652573-35652833(-)$1	260	8	11	9.0000
GGA	chr14:31604213-31604488(-)$1	275	121	124	9.0000
GGA	chr20:60913049-60913287(-)$1	238	34	37	9.0000
GGA	chr6:52143441-52143712(-)$1	271	20	23	9.0000
GGA	chr1:19487436-19487687(-)$1	251	21	24	9.0000
GGA	chr1:19487983-19488226(-)$1	243	23	26	9.0000
GGA	chr1:19483293-19483520(-)$1	227	60	63	9.0000
GGA	chr19:57325487-57325717(-)$1	230	23	26	9.0000
GGA	chr1:35652702-35652951(-)$1	249	81	84	9.0000
GGA	chr3:52836262-52836495(+)$1	233	16	19	9.0000
GGA	chr9:116929961-116930193(+)$1	232	11	14	9.0000
GGA	chr7:148702157-148702375(-)$1	218	0	3	9.0000
GGA	chr11:130013183-130013419(+)$1	236	141	144	9.0000
GGA	chr14:102548629-102548883(-)$1	254	6	9	9.0000
GGA	chr7:127341134-127341411(+)$1	277	138	141	9.0000
GGA	chr14:102452074-102452338(+)$1	264	50	53	9.0000
GGA	chrX:152955823-152956064(+)$1	241	44	47	9.0000
GGA	chr9:116994001-116994239(+)$1	238	100	103	9.0000
GGA	chr1:67895721-67896023(-)$1	302	13	16	9.0000
GGA	chr17:75484225-75484478(+)$1	253	103	106	9.0000
GGA	chr7:103629635-103629887(-)$1	252	86	89	9.0000
GGA	chr20:60885227-60885462(-)$1	235	40	43	9.0000
GGA	chr1:19452997-19453249(-)$1	252	40	43	9.0000
GGA	chr1:8926237-8926458(-)$1	221	6	9	9.0000
GGA	chr20:60913433-60913664(-)$1	231	21	24	9.0000
GGA	chr1:113231953-113232207(+)$1	254	100	103	9.0000
GGA	chr17:79803647-79803853(-)$1	206	3	6	9.0000
GGA	chr2:232325103-232325348(-)$1	245	13	16	9.0000
GGA	chr20:60903825-60904055(-)$1	230	8	11	9.0000
GGA	chr16:30721201-30721466(+)$1	265	4	7	9.0000
GGA	chr2:11755225-11755468(+)$1	243	51	54	9.0000
gga	chr14:23792136-23792370(+)$1	234	0	3	9.0000
GGA	chr3:184044922-184045214(+)$1	292	80	83	9.0000
GGA	chr17:80193762-80194054(+)$1	292	51	54	9.0000
GGA	chr3:49722141-49722410(-)$1	269	51	54	9.0000
GGA	chr6:144745101-144745314(+)$1	213	22	25	9.0000
GGA	chr2:232326498-232326771(-)$1	273	9	12	9.0000
GGA	chr16:28847471-28847734(+)$1	263	4	7	9.0000
GGA	chr20:43029850-43030149(+)$1	299	41	44	9.0000
GGA	chr1:979483-979740(+)$1	257	19	22	9.0000
GGA	chr19:51857296-51857633(-)$1	337	90	93	9.0000
GGA	chr1:19474425-19474680(-)$1	255	58	61	9.0000
GGA	chr14:39648426-39648640(+)$1	214	38	41	9.0000
GGA	chr14:24113938-24114166(+)$1	228	104	107	9.0000
GGA	chr20:60913524-60913760(-)$1	236	16	19	9.0000
GGA	chr2:27606290-27606569(-)$1	279	38	41	9.0000
GGA	chr1:67880748-67881031(-)$1	283	32	35	9.0000
GGA	chr9:712423-712691(+)$1	268	48	51	9.0000
GGA	chr7:148711901-148712129(-)$1	228	34	37	9.0000
GGA	chr2:54849382-54849624(+)$1	242	11	14	9.0000
gga	chr14:102550932-102551190(-)$1	258	1	4	9.0000
GGA	chr3:48456292-48456542(-)$1	250	13	16	9.0000
GGA	chr7:148717958-148718168(-)$1	210	8	11	9.0000
GGA	chr20:60913185-60913422(-)$1	237	17	20	9.0000
GGA	chr2:232326431-232326673(-)$1	242	140	143	9.0000
gga	chr9:100777605-100777868(+)$1	263	41	44	9.0000
GGA	chrX:128645800-128646041(-)$1	241	52	55	9.0000
GGA	chr9:116931317-116931552(+)$1	235	13	16	9.0000
GGA	chr20:34309609-34309854(-)$1	245	100	103	9.0000
GGA	chr9:116930028-116930252(+)$1	224	2	5	9.0000
GGA	chr1:19444252-19444503(-)$1	251	117	120	9.0000
GGA	chr20:62904670-62905013(+)$1	343	4	7	9.0000
GGA	chr1:19490652-19490888(-)$1	236	33	36	9.0000
GGA	chr12:57567503-57567741(+)$1	238	10	13	9.0000
GGA	chr7:2403166-2403450(+)$1	284	6	9	9.0000
GGA	chr17:74383439-74383714(+)$1	275	8	11	9.0000
GGA	chr9:116958164-116958379(+)$1	215	102	105	9.0000
GGA	chr20:31022371-31022647(+)$1	276	67	70	9.0000
GGA	chr22:36690062-36690303(-)$1	241	9	12	9.0000
GGA	chr3:58084337-58084594(+)$1	257	79	82	9.0000
GGA	chr19:51856276-51856562(-)$1	286	17	20	9.0000
GGA	chr14:102551608-102551860(-)$1	252	109	112	9.0000
GGA	chr20:31022794-31023039(+)$1	245	48	51	9.0000
GGA	chr1:19474956-19475210(-)$1	254	45	48	9.0000
GGA	chr1:19523554-19523823(-)$1	269	100	103	9.0000
GGA	chr2:54856638-54856894(+)$1	256	2	5	9.0000
GGA	chr9:117050890-117051131(+)$1	241	109	112	9.0000
GGA	chr21:46915219-46915445(+)$1	226	62	65	9.0000
GGA	chr2:232326205-232326473(-)$1	268	35	38	9.0000
GGA	chr1:19484306-19484553(-)$1	247	82	85	9.0000
GGA	chr10:101603535-101603757(+)$1	222	48	51	9.0000
GGA	chr19:57325237-57325471(-)$1	234	5	8	9.0000
GGA	chr7:103276709-103276944(-)$1	235	39	42	9.0000
GGA	chr11:130011740-130012027(+)$1	287	41	44	9.0000
GGA	chr20:60905444-60905667(-)$1	223	89	92	9.0000
GGA	chr8:124381215-124381517(-)$1	302	185	188	9.0000
GGA	chr1:245021406-245021671(-)$1	265	5	8	9.0000
GGA	chr1:171510113-171510367(+)$1	254	0	3	9.0000
GGA	chr1:234565838-234566131(-)$1	293	83	86	9.0000
GGA	chr5:138661102-138661446(+)$1	344	28	31	9.0000
GGA	chr14:39648306-39648551(+)$1	245	2	5	9.0000

#otherMatches

#Struct PSSM
CCC	chr1:245027002-245027293(-)$1	291	2	5	9.0000
bb[	chr1:245018788-245019011(-)$1	223	10	13	9.0000
EE:	chr9:117014773-117015022(+)$1	249	17	20	9.0000
F::	chr11:67810715-67811052(+)$1	337	71	74	9.0000
[cc	chr22:41545777-41546099(+)$1	322	48	51	9.0000
ff[	chr2:220435706-220435980(-)$1	274	43	46	9.0000
F{B	chr4:1806517-1806754(+)$1	237	41	44	9.0000
BB{	chr1:35652573-35652833(-)$1	260	8	11	9.0000
666	chr14:31604213-31604488(-)$1	275	121	124	9.0000
!!e	chr20:60913049-60913287(-)$1	238	34	37	9.0000
e::	chr6:52143441-52143712(-)$1	271	20	23	9.0000
iii	chr1:19487436-19487687(-)$1	251	21	24	9.0000
dee	chr1:19487983-19488226(-)$1	243	23	26	9.0000
ee:	chr1:19483293-19483520(-)$1	227	60	63	9.0000
ccc	chr19:57325487-57325717(-)$1	230	23	26	9.0000
:::	chr1:35652702-35652951(-)$1	249	81	84	9.0000
bb[	chr3:52836262-52836495(+)$1	233	16	19	9.0000
HHH	chr9:116929961-116930193(+)$1	232	11	14	9.0000
fff	chr7:148702157-148702375(-)$1	218	0	3	9.0000
c[a	chr11:130013183-130013419(+)$1	236	141	144	9.0000
::D	chr14:102548629-102548883(-)$1	254	6	9	9.0000
eee	chr7:127341134-127341411(+)$1	277	138	141	9.0000
c[c	chr14:102452074-102452338(+)$1	264	50	53	9.0000
ggg	chrX:152955823-152956064(+)$1	241	44	47	9.0000
fff	chr9:116994001-116994239(+)$1	238	100	103	9.0000
FFF	chr1:67895721-67896023(-)$1	302	13	16	9.0000
eee	chr17:75484225-75484478(+)$1	253	103	106	9.0000
eee	chr7:103629635-103629887(-)$1	252	86	89	9.0000
ggg	chr20:60885227-60885462(-)$1	235	40	43	9.0000
cc4	chr1:19452997-19453249(-)$1	252	40	43	9.0000
hh[	chr1:8926237-8926458(-)$1	221	6	9	9.0000
EE{	chr20:60913433-60913664(-)$1	231	21	24	9.0000
cc5	chr1:113231953-113232207(+)$1	254	100	103	9.0000
GGG	chr17:79803647-79803853(-)$1	206	3	6	9.0000
b[b	chr2:232325103-232325348(-)$1	245	13	16	9.0000
BB{	chr20:60903825-60904055(-)$1	230	8	11	9.0000
EE:	chr16:30721201-30721466(+)$1	265	4	7	9.0000
3ii	chr2:11755225-11755468(+)$1	243	51	54	9.0000
eee	chr14:23792136-23792370(+)$1	234	0	3	9.0000
EEE	chr3:184044922-184045214(+)$1	292	80	83	9.0000
gg]	chr17:80193762-80194054(+)$1	292	51	54	9.0000
bb:	chr3:49722141-49722410(-)$1	269	51	54	9.0000
EEK	chr6:144745101-144745314(+)$1	213	22	25	9.0000
FF:	chr2:232326498-232326771(-)$1	273	9	12	9.0000
mmm	chr16:28847471-28847734(+)$1	263	4	7	9.0000
a!!	chr20:43029850-43030149(+)$1	299	41	44	9.0000
hhh	chr1:979483-979740(+)$1	257	19	22	9.0000
GGG	chr19:51857296-51857633(-)$1	337	90	93	9.0000
LGG	chr1:19474425-19474680(-)$1	255	58	61	9.0000
BKK	chr14:39648426-39648640(+)$1	214	38	41	9.0000
dd3	chr14:24113938-24114166(+)$1	228	104	107	9.0000
DDM	chr20:60913524-60913760(-)$1	236	16	19	9.0000
ggg	chr2:27606290-27606569(-)$1	279	38	41	9.0000
coo	chr1:67880748-67881031(-)$1	283	32	35	9.0000
GGG	chr9:712423-712691(+)$1	268	48	51	9.0000
dd:	chr7:148711901-148712129(-)$1	228	34	37	9.0000
CC{	chr2:54849382-54849624(+)$1	242	11	14	9.0000
BB{	chr14:102550932-102551190(-)$1	258	1	4	9.0000
ccc	chr3:48456292-48456542(-)$1	250	13	16	9.0000
DDD	chr7:148717958-148718168(-)$1	210	8	11	9.0000
EEE	chr20:60913185-60913422(-)$1	237	17	20	9.0000
DDD	chr2:232326431-232326673(-)$1	242	140	143	9.0000
gg2	chr9:100777605-100777868(+)$1	263	41	44	9.0000
FFF	chrX:128645800-128646041(-)$1	241	52	55	9.0000
ff:	chr9:116931317-116931552(+)$1	235	13	16	9.0000
EEE	chr20:34309609-34309854(-)$1	245	100	103	9.0000
ggg	chr9:116930028-116930252(+)$1	224	2	5	9.0000
JEE	chr1:19444252-19444503(-)$1	251	117	120	9.0000
GGG	chr20:62904670-62905013(+)$1	343	4	7	9.0000
ddd	chr1:19490652-19490888(-)$1	236	33	36	9.0000
eee	chr12:57567503-57567741(+)$1	238	10	13	9.0000
g[b	chr7:2403166-2403450(+)$1	284	6	9	9.0000
ee[	chr17:74383439-74383714(+)$1	275	8	11	9.0000
fff	chr9:116958164-116958379(+)$1	215	102	105	9.0000
ooo	chr20:31022371-31022647(+)$1	276	67	70	9.0000
EEE	chr22:36690062-36690303(-)$1	241	9	12	9.0000
H::	chr3:58084337-58084594(+)$1	257	79	82	9.0000
DDD	chr19:51856276-51856562(-)$1	286	17	20	9.0000
ccc	chr14:102551608-102551860(-)$1	252	109	112	9.0000
ccc	chr20:31022794-31023039(+)$1	245	48	51	9.0000
IIg	chr1:19474956-19475210(-)$1	254	45	48	9.0000
gg]	chr1:19523554-19523823(-)$1	269	100	103	9.0000
BNN	chr2:54856638-54856894(+)$1	256	2	5	9.0000
eee	chr9:117050890-117051131(+)$1	241	109	112	9.0000
cc>	chr21:46915219-46915445(+)$1	226	62	65	9.0000
:::	chr2:232326205-232326473(-)$1	268	35	38	9.0000
ggg	chr1:19484306-19484553(-)$1	247	82	85	9.0000
2cc	chr10:101603535-101603757(+)$1	222	48	51	9.0000
dff	chr19:57325237-57325471(-)$1	234	5	8	9.0000
ccc	chr7:103276709-103276944(-)$1	235	39	42	9.0000
hh:	chr11:130011740-130012027(+)$1	287	41	44	9.0000
eee	chr20:60905444-60905667(-)$1	223	89	92	9.0000
fff	chr8:124381215-124381517(-)$1	302	185	188	9.0000
d!!	chr1:245021406-245021671(-)$1	265	5	8	9.0000
:::	chr1:171510113-171510367(+)$1	254	0	3	9.0000
d22	chr1:234565838-234566131(-)$1	293	83	86	9.0000
CCC	chr5:138661102-138661446(+)$1	344	28	31	9.0000
:::	chr14:39648306-39648551(+)$1	245	2	5	9.0000

#DB
(((	chr1:245027002-245027293(-)$1	1	2	5	9.0000
((.	chr1:245018788-245019011(-)$1	1	10	13	9.0000
((.	chr9:117014773-117015022(+)$1	1	17	20	9.0000
(..	chr11:67810715-67811052(+)$1	1	71	74	9.0000
.((	chr22:41545777-41546099(+)$1	1	48	51	9.0000
((.	chr2:220435706-220435980(-)$1	1	43	46	9.0000
(.(	chr4:1806517-1806754(+)$1	1	41	44	9.0000
((.	chr1:35652573-35652833(-)$1	1	8	11	9.0000
...	chr14:31604213-31604488(-)$1	1	121	124	9.0000
..(	chr20:60913049-60913287(-)$1	1	34	37	9.0000
)..	chr6:52143441-52143712(-)$1	1	20	23	9.0000
(((	chr1:19487436-19487687(-)$1	1	21	24	9.0000
)))	chr1:19487983-19488226(-)$1	1	23	26	9.0000
)).	chr1:19483293-19483520(-)$1	1	60	63	9.0000
(((	chr19:57325487-57325717(-)$1	1	23	26	9.0000
...	chr1:35652702-35652951(-)$1	1	81	84	9.0000
((.	chr3:52836262-52836495(+)$1	1	16	19	9.0000
(((	chr9:116929961-116930193(+)$1	1	11	14	9.0000
(((	chr7:148702157-148702375(-)$1	1	0	3	9.0000
(.(	chr11:130013183-130013419(+)$1	1	141	144	9.0000
..(	chr14:102548629-102548883(-)$1	1	6	9	9.0000
)))	chr7:127341134-127341411(+)$1	1	138	141	9.0000
(.(	chr14:102452074-102452338(+)$1	1	50	53	9.0000
(((	chrX:152955823-152956064(+)$1	1	44	47	9.0000
)))	chr9:116994001-116994239(+)$1	1	100	103	9.0000
(((	chr1:67895721-67896023(-)$1	1	13	16	9.0000
)))	chr17:75484225-75484478(+)$1	1	103	106	9.0000
)))	chr7:103629635-103629887(-)$1	1	86	89	9.0000
(((	chr20:60885227-60885462(-)$1	1	40	43	9.0000
)).	chr1:19452997-19453249(-)$1	1	40	43	9.0000
((.	chr1:8926237-8926458(-)$1	1	6	9	9.0000
((.	chr20:60913433-60913664(-)$1	1	21	24	9.0000
)).	chr1:113231953-113232207(+)$1	1	100	103	9.0000
(((	chr17:79803647-79803853(-)$1	1	3	6	9.0000
(.(	chr2:232325103-232325348(-)$1	1	13	16	9.0000
((.	chr20:60903825-60904055(-)$1	1	8	11	9.0000
((.	chr16:30721201-30721466(+)$1	1	4	7	9.0000
.))	chr2:11755225-11755468(+)$1	1	51	54	9.0000
(((	chr14:23792136-23792370(+)$1	1	0	3	9.0000
(((	chr3:184044922-184045214(+)$1	1	80	83	9.0000
)).	chr17:80193762-80194054(+)$1	1	51	54	9.0000
)).	chr3:49722141-49722410(-)$1	1	51	54	9.0000
((.	chr6:144745101-144745314(+)$1	1	22	25	9.0000
((.	chr2:232326498-232326771(-)$1	1	9	12	9.0000
...	chr16:28847471-28847734(+)$1	1	4	7	9.0000
(..	chr20:43029850-43030149(+)$1	1	41	44	9.0000
(((	chr1:979483-979740(+)$1	1	19	22	9.0000
(((	chr19:51857296-51857633(-)$1	1	90	93	9.0000
.((	chr1:19474425-19474680(-)$1	1	58	61	9.0000
(..	chr14:39648426-39648640(+)$1	1	38	41	9.0000
)).	chr14:24113938-24114166(+)$1	1	104	107	9.0000
((.	chr20:60913524-60913760(-)$1	1	16	19	9.0000
(((	chr2:27606290-27606569(-)$1	1	38	41	9.0000
(..	chr1:67880748-67881031(-)$1	1	32	35	9.0000
(((	chr9:712423-712691(+)$1	1	48	51	9.0000
)).	chr7:148711901-148712129(-)$1	1	34	37	9.0000
((.	chr2:54849382-54849624(+)$1	1	11	14	9.0000
((.	chr14:102550932-102551190(-)$1	1	1	4	9.0000
(((	chr3:48456292-48456542(-)$1	1	13	16	9.0000
(((	chr7:148717958-148718168(-)$1	1	8	11	9.0000
(((	chr20:60913185-60913422(-)$1	1	17	20	9.0000
(((	chr2:232326431-232326673(-)$1	1	140	143	9.0000
)).	chr9:100777605-100777868(+)$1	1	41	44	9.0000
(((	chrX:128645800-128646041(-)$1	1	52	55	9.0000
)).	chr9:116931317-116931552(+)$1	1	13	16	9.0000
(((	chr20:34309609-34309854(-)$1	1	100	103	9.0000
(((	chr9:116930028-116930252(+)$1	1	2	5	9.0000
)))	chr1:19444252-19444503(-)$1	1	117	120	9.0000
(((	chr20:62904670-62905013(+)$1	1	4	7	9.0000
(((	chr1:19490652-19490888(-)$1	1	33	36	9.0000
(((	chr12:57567503-57567741(+)$1	1	10	13	9.0000
(.(	chr7:2403166-2403450(+)$1	1	6	9	9.0000
((.	chr17:74383439-74383714(+)$1	1	8	11	9.0000
)))	chr9:116958164-116958379(+)$1	1	102	105	9.0000
...	chr20:31022371-31022647(+)$1	1	67	70	9.0000
(((	chr22:36690062-36690303(-)$1	1	9	12	9.0000
)..	chr3:58084337-58084594(+)$1	1	79	82	9.0000
(((	chr19:51856276-51856562(-)$1	1	17	20	9.0000
(((	chr14:102551608-102551860(-)$1	1	109	112	9.0000
(((	chr20:31022794-31023039(+)$1	1	48	51	9.0000
(((	chr1:19474956-19475210(-)$1	1	45	48	9.0000
)).	chr1:19523554-19523823(-)$1	1	100	103	9.0000
(..	chr2:54856638-54856894(+)$1	1	2	5	9.0000
(((	chr9:117050890-117051131(+)$1	1	109	112	9.0000
)).	chr21:46915219-46915445(+)$1	1	62	65	9.0000
...	chr2:232326205-232326473(-)$1	1	35	38	9.0000
)))	chr1:19484306-19484553(-)$1	1	82	85	9.0000
.))	chr10:101603535-101603757(+)$1	1	48	51	9.0000
(((	chr19:57325237-57325471(-)$1	1	5	8	9.0000
(((	chr7:103276709-103276944(-)$1	1	39	42	9.0000
)).	chr11:130011740-130012027(+)$1	1	41	44	9.0000
)))	chr20:60905444-60905667(-)$1	1	89	92	9.0000
)))	chr8:124381215-124381517(-)$1	1	185	188	9.0000
(..	chr1:245021406-245021671(-)$1	1	5	8	9.0000
...	chr1:171510113-171510367(+)$1	1	0	3	9.0000
)..	chr1:234565838-234566131(-)$1	1	83	86	9.0000
(((	chr5:138661102-138661446(+)$1	1	28	31	9.0000
...	chr14:39648306-39648551(+)$1	1	2	5	9.0000

#PSSM
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	

#score	882.0000000000002
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_transcript_m1_run2.nuc.txt

#NT
auuuu	chr10:46080725-46081003(-)$1	278	126	131	14.9999
AUUUU	chr5:65447467-65447733(+)$1	266	117	122	14.9999
auuuu	chr2:183863867-183864117(-)$1	250	67	72	14.9999
auuuu	chr7:135795673-135795943(+)$1	270	93	98	14.9999
auuuu	chrX:74346689-74347032(-)$1	343	32	37	14.9999
auuuu	chr18:13043351-13043604(+)$1	253	204	209	14.9999
auuuu	chr2:33199686-33199973(+)$1	287	110	115	14.9999
auuuu	chr5:74829560-74829830(+)$1	270	93	98	14.9999
auuuu	chr15:58317195-58317459(-)$1	264	89	94	14.9999
auuuu	chr11:76654515-76654734(+)$1	219	61	66	14.9999
auuuu	chr18:9229241-9229499(+)$1	258	98	103	14.9999
auuuu	chr7:120813467-120813675(+)$1	208	200	205	14.9999
auuuu	chr21:46288530-46288806(-)$1	276	267	272	14.9999
auuuu	chr10:65150460-65150699(-)$1	239	98	103	14.9999
auuuu	chr2:109074416-109074672(+)$1	256	53	58	14.9999
auuuu	chr5:131097637-131097890(-)$1	253	86	91	14.9999
auuuu	chr8:90747279-90747527(-)$1	248	203	208	14.9999
auuuu	chr6:20592769-20593029(+)$1	260	96	101	14.9999
AUUUU	chr1:246345978-246346240(-)$1	262	55	60	14.9999
auuuu	chr6:143495621-143495846(+)$1	225	173	178	14.9999
auuuu	chr2:45790862-45791145(-)$1	283	193	198	14.9999
auuuu	chr6:143493305-143493562(+)$1	257	167	172	14.9999
auuuu	chr4:151799404-151799639(-)$1	235	2	7	14.9999
auuuu	chr7:91613188-91613411(+)$1	223	25	30	14.9999
AUUUU	chr1:155532054-155532297(-)$1	243	91	96	14.9999
auuuu	chr10:74782771-74783043(-)$1	272	58	63	14.9999
auuuu	chr11:5285479-5285752(-)$1	273	101	106	14.9999
AUUUU	chr7:127359487-127359740(+)$1	253	101	106	14.9999
auuuu	chr1:46400655-46400888(+)$1	233	82	87	14.9999
auuuu	chr6:108697842-108698075(+)$1	233	2	7	14.9999
auuuu	chr7:16456133-16456389(-)$1	256	71	76	14.9999
auuuu	chr5:37529713-37530001(+)$1	288	58	63	14.9999
auuuu	chr12:28441090-28441325(+)$1	235	197	202	14.9999
AUUUU	chrX:40948045-40948293(+)$1	248	2	7	14.9999
auuuu	chr1:93184403-93184661(-)$1	258	162	167	14.9999
auuuu	chr1:213312788-213313008(+)$1	220	64	69	14.9999
AUUUU	chr8:26151867-26152127(+)$1	260	39	44	14.9999
auuuu	chr5:61775491-61775752(+)$1	261	35	40	14.9999
auuuu	chr2:183836485-183836728(-)$1	243	81	86	14.9999
AUUUU	chr7:155541301-155541631(+)$1	330	108	113	14.9999
auuuu	chr1:180667357-180667593(+)$1	236	58	63	14.9999
auuuu	chr4:456699-456944(-)$1	245	168	173	14.9999
auuuu	chr12:62683388-62683644(+)$1	256	222	227	14.9999
auuuu	chr10:17698953-17699195(+)$1	242	145	150	14.9999
auuuu	chr7:772375-772611(+)$1	236	198	203	14.9999
auuuu	chr5:53551687-53551974(-)$1	287	81	86	14.9999
auuuu	chr1:207522017-207522272(+)$1	255	65	70	14.9999
auuuu	chr2:209155204-209155450(+)$1	246	125	130	14.9999
auuuu	chr5:34241043-34241287(-)$1	244	41	46	14.9999
auuuu	chr6:143494090-143494300(+)$1	210	35	40	14.9999
auuuu	chr1:246106326-246106577(-)$1	251	37	42	14.9999
auuuu	chr18:1282448-1282718(-)$1	270	32	37	14.9999
auuuu	chr6:8032326-8032597(-)$1	271	5	10	14.9999
auuuu	chr10:24942791-24943062(-)$1	271	1	6	14.9999
auuuu	chr10:74783409-74783660(-)$1	251	131	136	14.9999
auuuu	chr1:225119817-225120066(+)$1	249	3	8	14.9999
AUUUU	chr10:28883835-28884141(+)$1	306	36	41	14.9999
auuuu	chr5:150116998-150117259(-)$1	261	249	254	14.9999
auuuu	chr3:101153253-101153484(-)$1	231	72	77	14.9999
auuuu	chr1:176046340-176046588(-)$1	248	8	13	14.9999
auuuu	chr1:180666386-180666620(+)$1	234	84	89	14.9999
auuuu	chr1:193139797-193140070(+)$1	273	37	42	14.9999
auuuu	chr4:68521804-68522035(-)$1	231	30	35	14.9999
auuuu	chr2:173978271-173978501(+)$1	230	71	76	14.9999
auuuu	chr2:209156820-209157126(+)$1	306	4	9	14.9999
auuuu	chr7:135797622-135797890(+)$1	268	36	41	14.9999
auuuu	chr19:21342435-21342666(+)$1	231	86	91	14.9999
AUUUU	chr15:28836193-28836476(+)$1	283	86	91	14.9999
auuuu	chr1:100837138-100837377(+)$1	239	122	127	14.9999
auuuu	chr22:17275554-17275802(-)$1	248	17	22	14.9999
auuuu	chr6:45282306-45282535(-)$1	229	3	8	14.9999
auuuu	chr4:151798744-151798989(-)$1	245	26	31	14.9999
auuuu	chr10:135221480-135221859(+)$1	379	44	49	14.9999
auuuu	chr7:156500253-156500513(-)$1	260	59	64	14.9999
auuuu	chr15:58317009-58317248(-)$1	239	91	96	14.9999
auuuu	chr2:109075309-109075555(+)$1	246	19	24	14.9999
auuuu	chr17:15956120-15956387(-)$1	267	87	92	14.9999
AUUUU	chr1:230220107-230220361(+)$1	254	157	162	14.9999
auuuu	chrX:80025980-80026254(-)$1	274	211	216	14.9999

#otherMatches

#Struct PSSM
ee[cc	chr13:114194387-114194682(+)$1	295	23	28	14.9999
eemmm	chr10:46080725-46081003(-)$1	278	126	131	14.9999
eeee]	chr5:65447467-65447733(+)$1	266	117	122	14.9999
ooooo	chr2:183863867-183864117(-)$1	250	67	72	14.9999
cc[gg	chr7:135795673-135795943(+)$1	270	93	98	14.9999
=====	chrX:74346689-74347032(-)$1	343	32	37	14.9999
ddddf	chr18:13043351-13043604(+)$1	253	204	209	14.9999
f::::	chr2:33199686-33199973(+)$1	287	110	115	14.9999
qqqqq	chr5:74829560-74829830(+)$1	270	93	98	14.9999
:::::	chr15:58317195-58317459(-)$1	264	89	94	14.9999
$ffff	chr11:76654515-76654734(+)$1	219	61	66	14.9999
c333b	chr18:9229241-9229499(+)$1	258	98	103	14.9999
JJJJJ	chr7:120813467-120813675(+)$1	208	200	205	14.9999
ppppd	chr21:46288530-46288806(-)$1	276	267	272	14.9999
FFfff	chr10:65150460-65150699(-)$1	239	98	103	14.9999
qqqqq	chr2:109074416-109074672(+)$1	256	53	58	14.9999
dd!!c	chr5:131097637-131097890(-)$1	253	86	91	14.9999
:::::	chr8:90747279-90747527(-)$1	248	203	208	14.9999
:::::	chr6:20592769-20593029(+)$1	260	96	101	14.9999
ee!!c	chr1:246345978-246346240(-)$1	262	55	60	14.9999
d4444	chr6:143495621-143495846(+)$1	225	173	178	14.9999
F}DDD	chr2:45790862-45791145(-)$1	283	193	198	14.9999
cmmmm	chr6:143493305-143493562(+)$1	257	167	172	14.9999
:::::	chr4:151799404-151799639(-)$1	235	2	7	14.9999
F::::	chr7:91613188-91613411(+)$1	223	25	30	14.9999
:::::	chr1:155532054-155532297(-)$1	243	91	96	14.9999
qqqqq	chr10:74782771-74783043(-)$1	272	58	63	14.9999
fffff	chr11:5285479-5285752(-)$1	273	101	106	14.9999
]a22c	chr7:127359487-127359740(+)$1	253	101	106	14.9999
vvvvv	chr1:46400655-46400888(+)$1	233	82	87	14.9999
::fff	chr6:108697842-108698075(+)$1	233	2	7	14.9999
gxxxx	chr7:16456133-16456389(-)$1	256	71	76	14.9999
ppppe	chr5:37529713-37530001(+)$1	288	58	63	14.9999
oooo=	chr12:28441090-28441325(+)$1	235	197	202	14.9999
EEEKK	chrX:40948045-40948293(+)$1	248	2	7	14.9999
cc333	chr1:93184403-93184661(-)$1	258	162	167	14.9999
b::::	chr1:213312788-213313008(+)$1	220	64	69	14.9999
:::::	chr8:26151867-26152127(+)$1	260	39	44	14.9999
ooooo	chr5:61775491-61775752(+)$1	261	35	40	14.9999
ooodd	chr2:183836485-183836728(-)$1	243	81	86	14.9999
gg:::	chr7:155541301-155541631(+)$1	330	108	113	14.9999
:::::	chr1:180667357-180667593(+)$1	236	58	63	14.9999
wwwwc	chr4:456699-456944(-)$1	245	168	173	14.9999
dd:::	chr12:62683388-62683644(+)$1	256	222	227	14.9999
^^^^^	chr10:17698953-17699195(+)$1	242	145	150	14.9999
444dd	chr7:772375-772611(+)$1	236	198	203	14.9999
:::::	chr5:53551687-53551974(-)$1	287	81	86	14.9999
g::::	chr1:207522017-207522272(+)$1	255	65	70	14.9999
:::::	chr2:209155204-209155450(+)$1	246	125	130	14.9999
&&&&&	chr5:34241043-34241287(-)$1	244	41	46	14.9999
e::::	chr6:143494090-143494300(+)$1	210	35	40	14.9999
:::::	chr1:246106326-246106577(-)$1	251	37	42	14.9999
[iiii	chr18:1282448-1282718(-)$1	270	32	37	14.9999
ffppp	chr6:8032326-8032597(-)$1	271	5	10	14.9999
::::E	chr10:24942791-24943062(-)$1	271	1	6	14.9999
ee333	chr10:74783409-74783660(-)$1	251	131	136	14.9999
JJJJJ	chr1:225119817-225120066(+)$1	249	3	8	14.9999
iiiii	chr10:28883835-28884141(+)$1	306	36	41	14.9999
JJJJ:	chr5:150116998-150117259(-)$1	261	249	254	14.9999
c!!cc	chr3:101153253-101153484(-)$1	231	72	77	14.9999
CLLLH	chr1:176046340-176046588(-)$1	248	8	13	14.9999
ee###	chr1:180666386-180666620(+)$1	234	84	89	14.9999
NNIII	chr1:193139797-193140070(+)$1	273	37	42	14.9999
=====	chr4:68521804-68522035(-)$1	231	30	35	14.9999
ll===	chr2:173978271-173978501(+)$1	230	71	76	14.9999
IIIII	chr2:209156820-209157126(+)$1	306	4	9	14.9999
FFFFF	chr7:135797622-135797890(+)$1	268	36	41	14.9999
HH:::	chr19:21342435-21342666(+)$1	231	86	91	14.9999
DDD::	chr15:28836193-28836476(+)$1	283	86	91	14.9999
!bb[f	chr1:100837138-100837377(+)$1	239	122	127	14.9999
EE:::	chr22:17275554-17275802(-)$1	248	17	22	14.9999
:::ff	chr6:45282306-45282535(-)$1	229	3	8	14.9999
FFKKE	chr4:151798744-151798989(-)$1	245	26	31	14.9999
PPPPP	chr10:135221480-135221859(+)$1	379	44	49	14.9999
5555e	chr7:156500253-156500513(-)$1	260	59	64	14.9999
dddd2	chr15:58317009-58317248(-)$1	239	91	96	14.9999
coooo	chr2:109075309-109075555(+)$1	246	19	24	14.9999
cclll	chr17:15956120-15956387(-)$1	267	87	92	14.9999
:::::	chr1:230220107-230220361(+)$1	254	157	162	14.9999
g::::	chrX:80025980-80026254(-)$1	274	211	216	14.9999

#DB
((.((	chr13:114194387-114194682(+)$1	1	23	28	14.9999
((...	chr10:46080725-46081003(-)$1	1	126	131	14.9999
)))).	chr5:65447467-65447733(+)$1	1	117	122	14.9999
.....	chr2:183863867-183864117(-)$1	1	67	72	14.9999
((.((	chr7:135795673-135795943(+)$1	1	93	98	14.9999
(((((	chrX:74346689-74347032(-)$1	1	32	37	14.9999
)))))	chr18:13043351-13043604(+)$1	1	204	209	14.9999
)....	chr2:33199686-33199973(+)$1	1	110	115	14.9999
.....	chr5:74829560-74829830(+)$1	1	93	98	14.9999
.....	chr15:58317195-58317459(-)$1	1	89	94	14.9999
.((((	chr11:76654515-76654734(+)$1	1	61	66	14.9999
)...)	chr18:9229241-9229499(+)$1	1	98	103	14.9999
)))))	chr7:120813467-120813675(+)$1	1	200	205	14.9999
....)	chr21:46288530-46288806(-)$1	1	267	272	14.9999
(((((	chr10:65150460-65150699(-)$1	1	98	103	14.9999
.....	chr2:109074416-109074672(+)$1	1	53	58	14.9999
((..(	chr5:131097637-131097890(-)$1	1	86	91	14.9999
.....	chr8:90747279-90747527(-)$1	1	203	208	14.9999
.....	chr6:20592769-20593029(+)$1	1	96	101	14.9999
((..(	chr1:246345978-246346240(-)$1	1	55	60	14.9999
)....	chr6:143495621-143495846(+)$1	1	173	178	14.9999
).)))	chr2:45790862-45791145(-)$1	1	193	198	14.9999
(....	chr6:143493305-143493562(+)$1	1	167	172	14.9999
.....	chr4:151799404-151799639(-)$1	1	2	7	14.9999
(....	chr7:91613188-91613411(+)$1	1	25	30	14.9999
.....	chr1:155532054-155532297(-)$1	1	91	96	14.9999
.....	chr10:74782771-74783043(-)$1	1	58	63	14.9999
(((((	chr11:5285479-5285752(-)$1	1	101	106	14.9999
.)..)	chr7:127359487-127359740(+)$1	1	101	106	14.9999
.....	chr1:46400655-46400888(+)$1	1	82	87	14.9999
..(((	chr6:108697842-108698075(+)$1	1	2	7	14.9999
(....	chr7:16456133-16456389(-)$1	1	71	76	14.9999
....)	chr5:37529713-37530001(+)$1	1	58	63	14.9999
....)	chr12:28441090-28441325(+)$1	1	197	202	14.9999
(((..	chrX:40948045-40948293(+)$1	1	2	7	14.9999
))...	chr1:93184403-93184661(-)$1	1	162	167	14.9999
)....	chr1:213312788-213313008(+)$1	1	64	69	14.9999
.....	chr8:26151867-26152127(+)$1	1	39	44	14.9999
.....	chr5:61775491-61775752(+)$1	1	35	40	14.9999
...))	chr2:183836485-183836728(-)$1	1	81	86	14.9999
))...	chr7:155541301-155541631(+)$1	1	108	113	14.9999
.....	chr1:180667357-180667593(+)$1	1	58	63	14.9999
....)	chr4:456699-456944(-)$1	1	168	173	14.9999
))...	chr12:62683388-62683644(+)$1	1	222	227	14.9999
.....	chr10:17698953-17699195(+)$1	1	145	150	14.9999
...))	chr7:772375-772611(+)$1	1	198	203	14.9999
.....	chr5:53551687-53551974(-)$1	1	81	86	14.9999
)....	chr1:207522017-207522272(+)$1	1	65	70	14.9999
.....	chr2:209155204-209155450(+)$1	1	125	130	14.9999
.....	chr5:34241043-34241287(-)$1	1	41	46	14.9999
)....	chr6:143494090-143494300(+)$1	1	35	40	14.9999
.....	chr1:246106326-246106577(-)$1	1	37	42	14.9999
.((((	chr18:1282448-1282718(-)$1	1	32	37	14.9999
((...	chr6:8032326-8032597(-)$1	1	5	10	14.9999
....(	chr10:24942791-24943062(-)$1	1	1	6	14.9999
))...	chr10:74783409-74783660(-)$1	1	131	136	14.9999
(((((	chr1:225119817-225120066(+)$1	1	3	8	14.9999
)))))	chr10:28883835-28884141(+)$1	1	36	41	14.9999
)))).	chr5:150116998-150117259(-)$1	1	249	254	14.9999
(..((	chr3:101153253-101153484(-)$1	1	72	77	14.9999
(...(	chr1:176046340-176046588(-)$1	1	8	13	14.9999
((...	chr1:180666386-180666620(+)$1	1	84	89	14.9999
..(((	chr1:193139797-193140070(+)$1	1	37	42	14.9999
(((((	chr4:68521804-68522035(-)$1	1	30	35	14.9999
..)))	chr2:173978271-173978501(+)$1	1	71	76	14.9999
(((((	chr2:209156820-209157126(+)$1	1	4	9	14.9999
(((((	chr7:135797622-135797890(+)$1	1	36	41	14.9999
))...	chr19:21342435-21342666(+)$1	1	86	91	14.9999
(((..	chr15:28836193-28836476(+)$1	1	86	91	14.9999
.((.(	chr1:100837138-100837377(+)$1	1	122	127	14.9999
((...	chr22:17275554-17275802(-)$1	1	17	22	14.9999
...((	chr6:45282306-45282535(-)$1	1	3	8	14.9999
((..(	chr4:151798744-151798989(-)$1	1	26	31	14.9999
.....	chr10:135221480-135221859(+)$1	1	44	49	14.9999
....)	chr7:156500253-156500513(-)$1	1	59	64	14.9999
)))).	chr15:58317009-58317248(-)$1	1	91	96	14.9999
(....	chr2:109075309-109075555(+)$1	1	19	24	14.9999
((...	chr17:15956120-15956387(-)$1	1	87	92	14.9999
.....	chr1:230220107-230220361(+)$1	1	157	162	14.9999
)....	chrX:80025980-80026254(-)$1	1	211	216	14.9999

#PSSM
a : 0.87	A : 0.12	
u : 0.87	U : 0.12	
u : 0.87	U : 0.12	
u : 0.87	U : 0.12	
u : 0.87	U : 0.12	

#score	1199.9999999999995
#seq	80
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_UTR_m2_run2.nuc.txt

#NT
UUUUUUUUU	chr16:3777286-3777566(-)$1	280	50	59	20.0612
UUUUUGUUU	chr4:48500680-48500982(-)$1	302	101	110	20.2653
UUUUUGUUU	chr2:70167202-70167450(+)$1	248	9	18	20.2653
UUUUUUUUU	chr6:33377443-33377663(+)$1	220	191	200	20.0612
UAUUUCUUU	chr6:32136010-32136295(-)$1	285	91	100	18.6326
UAUUUAUUU	chr16:3072147-3072413(+)$1	266	171	180	16.4897
UGUUUCUUU	chr16:69151836-69152149(-)$1	313	208	217	18.2244
UUUUUCUUA	chr7:6201415-6201691(-)$1	276	47	56	17.6122
uuuuuuuuu	chr5:177577311-177577542(+)$1	231	74	83	20.0612
UUUUUAUUU	chr1:228285652-228285944(+)$1	292	221	230	20.1632
uuuuucuuu	chr2:68405926-68406174(-)$1	248	14	23	22.3061
UUUUUGUUU	chrX:77082191-77082558(-)$1	367	106	115	20.2653
UUUUUUUUU	chr5:133707179-133707410(+)$1	231	68	77	20.0612
UUUUUAUUU	chr6:32083197-32083482(-)$1	285	248	257	20.1632
UUUUCCUUU	chrX:141290418-141290743(-)$1	325	249	258	17.7142
UUUUUGUUU	chr15:90170752-90171066(+)$1	314	90	99	20.2653
UUUCUCUUU	chr16:88763155-88763456(-)$1	301	237	246	17.8163
uuuuucuuu	chr14:50050225-50050494(-)$1	269	255	264	22.3061
UUUUUCUUU	chr17:7474879-7475198(+)$1	319	69	78	22.3061
UUUGUCUUU	chrX:70459432-70459714(-)$1	282	242	251	17.7142
UUUUUGUUU	chr3:47058007-47058289(-)$1	282	117	126	20.2653
CUUUUCUUU	chr17:61909564-61909810(-)$1	246	87	96	17.8163
UUUUUCCUU	chr3:13358849-13359082(-)$1	233	108	117	17.8163
UUUUACUUU	chr12:57910296-57910543(-)$1	247	177	186	17.7142
UAUUUCUUU	chr11:9610500-9610743(+)$1	243	79	88	18.6326
UUUUUCUUU	chr17:27207113-27207344(-)$1	231	31	40	22.3061
UUUUUCCUU	chr20:62906770-62907022(+)$1	252	78	87	17.8163
uuuuuuuuu	chr6:44122996-44123283(+)$1	287	192	201	20.0612
UUAUUCUUU	chr22:20105346-20105586(+)$1	240	204	213	17.5102
GUUUUCUUU	chr17:79876081-79876370(-)$1	289	182	191	17.9183
UUUUUCUUU	chr21:45564846-45565090(+)$1	244	92	101	22.3061
UAUUUAUUU	chr2:97525466-97525723(-)$1	257	186	195	16.4897
UUUUUCAUU	chr1:44456551-44456905(+)$1	354	29	38	17.7142
UUUUUCUUU	chr16:4853163-4853427(-)$1	264	32	41	22.3061
UUUUUGUUU	chr4:83739845-83740137(-)$1	292	89	98	20.2653
uuuuuguuu	chr7:100466353-100466588(+)$1	235	220	229	20.2653
GUUUUGUUU	chr19:1258767-1258996(+)$1	229	0	9	15.8775
UUUUUCUAU	chr8:23429817-23430058(+)$1	241	4	13	17.5102
UUUUGCUUU	chr9:131018086-131018337(-)$1	251	192	201	17.7142
UAUUUCUUU	chr19:1434924-1435186(+)$1	262	159	168	18.6326
UUUUUCUUG	chr1:26604734-26605039(+)$1	305	91	100	17.6122
UCUUUCUUU	chr1:43391996-43392249(-)$1	253	90	99	18.3265
uuuuuuuuu	chr2:130948086-130948333(+)$1	247	228	237	20.0612
UUUCUCUUU	chr17:40128500-40128831(-)$1	331	31	40	17.8163
UCUUUCUUU	chr4:39460410-39460631(-)$1	221	95	104	18.3265
UUUUUCUUU	chr14:75548832-75549122(-)$1	290	108	117	22.3061
AUUUUAUUU	chr2:70902160-70902519(-)$1	359	314	323	15.6734
UUUUUAUUU	chr19:46030008-46030262(+)$1	254	70	79	20.1632

#otherMatches

#Struct PSSM
========o	chr6:26599177-26599452(+)$1	275	194	203	20.1632
ccppppppp	chr16:3777286-3777566(-)$1	280	50	59	20.0612
=========	chr4:48500680-48500982(-)$1	302	101	110	20.2653
ggggggg[b	chr2:70167202-70167450(+)$1	248	9	18	20.2653
g::::::::	chr6:33377443-33377663(+)$1	220	191	200	20.0612
^^^^^^^^^	chr6:32136010-32136295(-)$1	285	91	100	18.6326
>>>>>>>>f	chr16:3072147-3072413(+)$1	266	171	180	16.4897
:::::::::	chr16:69151836-69152149(-)$1	313	208	217	18.2244
22hhhhhhh	chr7:6201415-6201691(-)$1	276	47	56	17.6122
gggggg666	chr5:177577311-177577542(+)$1	231	74	83	20.0612
e[eeeeenn	chr1:228285652-228285944(+)$1	292	221	230	20.1632
JJJJ::::d	chr2:68405926-68406174(-)$1	248	14	23	22.3061
gggggg666	chrX:77082191-77082558(-)$1	367	106	115	20.2653
+++++++++	chr5:133707179-133707410(+)$1	231	68	77	20.0612
9999ggggg	chr6:32083197-32083482(-)$1	285	248	257	20.1632
88888888d	chrX:141290418-141290743(-)$1	325	249	258	17.7142
IIIIIII::	chr15:90170752-90171066(+)$1	314	90	99	20.2653
fffff[ddd	chr16:88763155-88763456(-)$1	301	237	246	17.8163
:::::::::	chr14:50050225-50050494(-)$1	269	255	264	22.3061
===oooooo	chr17:7474879-7475198(+)$1	319	69	78	22.3061
eeee]eeee	chrX:70459432-70459714(-)$1	282	242	251	17.7142
g"""ccc!!	chr3:47058007-47058289(-)$1	282	117	126	20.2653
ccc]eeeee	chr17:61909564-61909810(-)$1	246	87	96	17.8163
:::::bb##	chr3:13358849-13359082(-)$1	233	108	117	17.8163
nnnneeeee	chr12:57910296-57910543(-)$1	247	177	186	17.7142
dd!!ccc!!	chr11:9610500-9610743(+)$1	243	79	88	18.6326
+++++++++	chr17:27207113-27207344(-)$1	231	31	40	22.3061
+++++++++	chr20:62906770-62907022(+)$1	252	78	87	17.8163
iiiiii:::	chr6:44122996-44123283(+)$1	287	192	201	20.0612
wwwwwwwww	chr22:20105346-20105586(+)$1	240	204	213	17.5102
==ppppppp	chr17:79876081-79876370(-)$1	289	182	191	17.9183
::ddddooo	chr21:45564846-45565090(+)$1	244	92	101	22.3061
c[=======	chr2:97525466-97525723(-)$1	257	186	195	16.4897
B{IIIIIII	chr1:44456551-44456905(+)$1	354	29	38	17.7142
sggggggg2	chr16:4853163-4853427(-)$1	264	32	41	22.3061
[========	chr4:83739845-83740137(-)$1	292	89	98	20.2653
g:JJJJJJJ	chr7:100466353-100466588(+)$1	235	220	229	20.2653
:iiiiiiii	chr19:1258767-1258996(+)$1	229	0	9	15.8775
::::::fff	chr8:23429817-23430058(+)$1	241	4	13	17.5102
hhhhhssss	chr9:131018086-131018337(-)$1	251	192	201	17.7142
fffff[ccc	chr19:1434924-1435186(+)$1	262	159	168	18.6326
cpppppppc	chr1:26604734-26605039(+)$1	305	91	100	17.6122
^^^^^^^^^	chr1:43391996-43392249(-)$1	253	90	99	18.3265
:::::::::	chr2:130948086-130948333(+)$1	247	228	237	20.0612
+ffffff[d	chr17:40128500-40128831(-)$1	331	31	40	17.8163
gggg[ffff	chr4:39460410-39460631(-)$1	221	95	104	18.3265
d::::::::	chr14:75548832-75549122(-)$1	290	108	117	22.3061
dpppppppd	chr2:70902160-70902519(-)$1	359	314	323	15.6734
hhhhhhh22	chr19:46030008-46030262(+)$1	254	70	79	20.1632

#DB
((((((((.	chr6:26599177-26599452(+)$1	1	194	203	20.1632
((.......	chr16:3777286-3777566(-)$1	1	50	59	20.0612
)))))))))	chr4:48500680-48500982(-)$1	1	101	110	20.2653
(((((((.(	chr2:70167202-70167450(+)$1	1	9	18	20.2653
)........	chr6:33377443-33377663(+)$1	1	191	200	20.0612
.........	chr6:32136010-32136295(-)$1	1	91	100	18.6326
........)	chr16:3072147-3072413(+)$1	1	171	180	16.4897
.........	chr16:69151836-69152149(-)$1	1	208	217	18.2244
..)))))))	chr7:6201415-6201691(-)$1	1	47	56	17.6122
))))))...	chr5:177577311-177577542(+)$1	1	74	83	20.0612
(.(((((..	chr1:228285652-228285944(+)$1	1	221	230	20.1632
((((....(	chr2:68405926-68406174(-)$1	1	14	23	22.3061
))))))...	chrX:77082191-77082558(-)$1	1	106	115	20.2653
.........	chr5:133707179-133707410(+)$1	1	68	77	20.0612
....)))))	chr6:32083197-32083482(-)$1	1	248	257	20.1632
........)	chrX:141290418-141290743(-)$1	1	249	258	17.7142
(((((((..	chr15:90170752-90171066(+)$1	1	90	99	20.2653
(((((.(((	chr16:88763155-88763456(-)$1	1	237	246	17.8163
.........	chr14:50050225-50050494(-)$1	1	255	264	22.3061
(((......	chr17:7474879-7475198(+)$1	1	69	78	22.3061
)))).))))	chrX:70459432-70459714(-)$1	1	242	251	17.7142
(...(((..	chr3:47058007-47058289(-)$1	1	117	126	20.2653
))).)))))	chr17:61909564-61909810(-)$1	1	87	96	17.8163
.....((..	chr3:13358849-13359082(-)$1	1	108	117	17.8163
....)))))	chr12:57910296-57910543(-)$1	1	177	186	17.7142
((..(((..	chr11:9610500-9610743(+)$1	1	79	88	18.6326
.........	chr17:27207113-27207344(-)$1	1	31	40	22.3061
.........	chr20:62906770-62907022(+)$1	1	78	87	17.8163
))))))...	chr6:44122996-44123283(+)$1	1	192	201	20.0612
.........	chr22:20105346-20105586(+)$1	1	204	213	17.5102
((.......	chr17:79876081-79876370(-)$1	1	182	191	17.9183
..((((...	chr21:45564846-45565090(+)$1	1	92	101	22.3061
(.(((((((	chr2:97525466-97525723(-)$1	1	186	195	16.4897
(.(((((((	chr1:44456551-44456905(+)$1	1	29	38	17.7142
.))))))).	chr16:4853163-4853427(-)$1	1	32	41	22.3061
.((((((((	chr4:83739845-83740137(-)$1	1	89	98	20.2653
).)))))))	chr7:100466353-100466588(+)$1	1	220	229	20.2653
.((((((((	chr19:1258767-1258996(+)$1	1	0	9	15.8775
......(((	chr8:23429817-23430058(+)$1	1	4	13	17.5102
(((((....	chr9:131018086-131018337(-)$1	1	192	201	17.7142
(((((.(((	chr19:1434924-1435186(+)$1	1	159	168	18.6326
(.......)	chr1:26604734-26605039(+)$1	1	91	100	17.6122
.........	chr1:43391996-43392249(-)$1	1	90	99	18.3265
.........	chr2:130948086-130948333(+)$1	1	228	237	20.0612
.((((((.(	chr17:40128500-40128831(-)$1	1	31	40	17.8163
((((.((((	chr4:39460410-39460631(-)$1	1	95	104	18.3265
)........	chr14:75548832-75549122(-)$1	1	108	117	22.3061
(.......)	chr2:70902160-70902519(-)$1	1	314	323	15.6734
)))))))..	chr19:46030008-46030262(+)$1	1	70	79	20.1632

#PSSM
U : 0.79	u : 0.12	G : 0.04	C : 0.02	A : 0.02	
U : 0.71	u : 0.12	A : 0.10	C : 0.04	G : 0.02	
U : 0.85	u : 0.12	A : 0.02	
U : 0.81	u : 0.12	C : 0.04	G : 0.02	
U : 0.81	u : 0.12	C : 0.02	A : 0.02	G : 0.02	
C : 0.53	A : 0.14	G : 0.14	U : 0.06	u : 0.06	c : 0.04	g : 0.02	
U : 0.81	u : 0.12	C : 0.04	A : 0.02	
U : 0.85	u : 0.12	A : 0.02	
U : 0.83	u : 0.12	A : 0.02	G : 0.02	

#score	940.1428571428577
#seq	49
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_transcript_m2_run2.nuc.txt

#NT
GGGGGGGG	chr4:38666206-38666477(+)$1	271	5	13	16.3015
gggucggg	chr19:21295886-21296119(-)$1	233	125	133	15.9047
ggggccgg	chr7:148580695-148580982(-)$1	287	39	47	16.2222
GGGGCGCG	chr1:162467538-162467821(+)$1	283	274	282	16.3809
GGGGCGCG	chr12:56122010-56122239(-)$1	229	201	209	16.3809
GGGGCGGG	chr17:80478114-80478376(+)$1	262	81	89	20.7460
GGGGCUGG	chr8:145650730-145651010(-)$1	280	104	112	16.4603
GGGGCGGC	chr11:16760121-16760443(+)$1	322	36	44	16.3015
ggggcggg	chr1:1243139-1243406(-)$1	267	70	78	20.7460
GGUGCGGG	chr19:50180394-50180674(+)$1	280	130	138	16.1428
gaggCGGG	chr1:87380366-87380605(+)$1	239	19	27	16.7777
GCGGCGGG	chr1:245026667-245026910(-)$1	243	17	25	16.6190
GGGGCGUG	chr8:17941466-17941707(-)$1	241	60	68	16.3809
GGGGCGGA	chr3:183602431-183602779(-)$1	348	334	342	16.3809
gaggcggg	chr16:2587900-2588217(+)$1	317	309	317	16.7777
GGGGUGGG	chr18:77867064-77867406(+)$1	342	137	145	16.3809
GGGGCGGG	chr17:55333991-55334261(+)$1	270	93	101	20.7460
GGGGCGGG	chr7:5569887-5570167(-)$1	280	250	258	20.7460
GGGGCGGG	chr3:42845817-42846087(-)$1	270	206	214	20.7460
GGGGCGGG	chr7:148580936-148581194(-)$1	258	195	203	20.7460
GGGGCUGG	chr3:37284660-37284985(+)$1	325	140	148	16.4603
GGGGCGGG	chr7:140098119-140098410(-)$1	291	232	240	20.7460
GGGGCGAG	chr19:5719788-5720057(-)$1	269	155	163	16.3809
cgggcggg	chr19:56166205-56166472(+)$1	267	69	77	16.3809
GGGGCUGG	chr1:16939857-16940138(-)$1	281	99	107	16.4603
GGGGCGGG	chr19:1269236-1269507(+)$1	271	41	49	20.7460
GGGGCGGG	chr6:111136445-111136688(-)$1	243	6	14	20.7460
GAGGCGGG	chr12:125398683-125398946(-)$1	263	2	10	16.7777
GGGGCGGC	chr22:26985815-26986070(-)$1	255	66	74	16.3015
GGGGCGGG	chr6:16129259-16129557(+)$1	298	12	20	20.7460
AGGGCGGG	chr17:62502001-62502242(-)$1	241	96	104	16.5396
GAGGCGGG	chr3:122785815-122786174(+)$1	359	77	85	16.7777
GGGGCGGG	chr3:195808803-195809051(-)$1	248	42	50	20.7460
GGGGCGGG	chr19:18548149-18548396(-)$1	247	44	52	20.7460
GGGGAGGG	chr1:40839980-40840236(+)$1	256	121	129	16.4603
GGGGCGGA	chr7:111202348-111202594(-)$1	246	4	12	16.3809
Agggcggg	chr7:111202238-111202521(-)$1	283	8	16	16.5396
UGGGCGGG	chr9:140149654-140149968(+)$1	314	4	12	16.5396
GGGGCGGG	chr12:30907473-30907727(-)$1	254	163	171	20.7460
GGGGCGGG	chr19:49606801-49607061(+)$1	260	96	104	20.7460
GGGGCGGG	chr11:62432687-62432933(+)$1	246	49	57	20.7460
GAGGCGGG	chr5:176980302-176980544(-)$1	242	69	77	16.7777
GCGGCGGG	chr17:79373147-79373416(+)$1	269	18	26	16.6190
GGAGCGGG	chr3:160117338-160117591(+)$1	253	136	144	16.0634
ggggcggg	chr11:85779964-85780214(-)$1	250	5	13	20.7460
GGGGCGGA	chr16:75018806-75019087(-)$1	281	3	11	16.3809
UGGGCGGG	chr12:56693895-56694180(-)$1	285	7	15	16.5396
GGGGCGGG	chr3:32726578-32726870(+)$1	292	35	43	20.7460
UGGGCGGG	chr11:2018862-2019127(-)$1	265	6	14	16.5396
GGGGCGUG	chr1:247095052-247095317(-)$1	265	51	59	16.3809
GGGGAGGG	chr11:292905-293158(+)$1	253	105	113	16.4603
GGGGCUGG	chr3:195808608-195808869(-)$1	261	10	18	16.4603
ggggcggg	chr22:42229065-42229339(+)$1	274	19	27	20.7460
ggugcggg	chr20:5591231-5591489(-)$1	258	18	26	16.1428
GGGGCGGG	chr1:109289227-109289509(+)$1	282	46	54	20.7460
GGGGCGGG	chr19:5719967-5720250(-)$1	283	190	198	20.7460
GGGGCGGG	chr12:30907426-30907673(-)$1	247	109	117	20.7460
ggggcgag	chr9:101867328-101867596(+)$1	268	81	89	16.3809
Agggcggg	chr1:150947034-150947297(-)$1	263	66	74	16.5396
GGGGCGGG	chr20:34252555-34252826(-)$1	271	210	218	20.7460
GGGGUGGG	chrX:102941445-102941726(-)$1	281	173	181	16.3809
GCGGCGGG	chr7:102119210-102119445(-)$1	235	127	135	16.6190

#otherMatches

#Struct PSSM
A}DDDD}A	chr2:61765237-61765499(-)$1	262	247	255	16.4603
DDDDEEEE	chr4:38666206-38666477(+)$1	271	5	13	16.3015
hhhhlllh	chr19:21295886-21296119(-)$1	233	125	133	15.9047
===cccqq	chr7:148580695-148580982(-)$1	287	39	47	16.2222
=====DDD	chr1:162467538-162467821(+)$1	283	274	282	16.3809
ggggffff	chr12:56122010-56122239(-)$1	229	201	209	16.3809
GGGGGEEE	chr17:80478114-80478376(+)$1	262	81	89	20.7460
gggg!!dd	chr8:145650730-145651010(-)$1	280	104	112	16.4603
c!!eeeee	chr11:16760121-16760443(+)$1	322	36	44	16.3015
eeee:A{E	chr1:1243139-1243406(-)$1	267	70	78	20.7460
:::::::d	chr19:50180394-50180674(+)$1	280	130	138	16.1428
"""cccii	chr1:87380366-87380605(+)$1	239	19	27	16.7777
g[cccnnn	chr1:245026667-245026910(-)$1	243	17	25	16.6190
a22=====	chr8:17941466-17941707(-)$1	241	60	68	16.3809
JJJJJJJJ	chr3:183602431-183602779(-)$1	348	334	342	16.3809
]ccc]a::	chr16:2587900-2588217(+)$1	317	309	317	16.7777
EEEFFFFF	chr18:77867064-77867406(+)$1	342	137	145	16.3809
i]eeeee3	chr17:55333991-55334261(+)$1	270	93	101	20.7460
======:D	chr7:5569887-5570167(-)$1	280	250	258	20.7460
C}FFFFFF	chr3:42845817-42846087(-)$1	270	206	214	20.7460
DDIIIIII	chr7:148580936-148581194(-)$1	258	195	203	20.7460
eeedddd!	chr3:37284660-37284985(+)$1	325	140	148	16.4603
II}DDDD:	chr7:140098119-140098410(-)$1	291	232	240	20.7460
nnnnffff	chr19:5719788-5720057(-)$1	269	155	163	16.3809
foooooof	chr19:56166205-56166472(+)$1	267	69	77	16.3809
CCC}BBCC	chr1:16939857-16940138(-)$1	281	99	107	16.4603
FFFF::ii	chr19:1269236-1269507(+)$1	271	41	49	20.7460
!!gggggg	chr6:111136445-111136688(-)$1	243	6	14	20.7460
!!eeeee[	chr12:125398683-125398946(-)$1	263	2	10	16.7777
eeeee[bb	chr22:26985815-26986070(-)$1	255	66	74	16.3015
ccCCCEEE	chr6:16129259-16129557(+)$1	298	12	20	20.7460
fff$$$$$	chr17:62502001-62502242(-)$1	241	96	104	16.5396
d:BB}EEE	chr3:122785815-122786174(+)$1	359	77	85	16.7777
EEEECCCd	chr3:195808803-195809051(-)$1	248	42	50	20.7460
ff!!a!!a	chr19:18548149-18548396(-)$1	247	44	52	20.7460
FFFYYFFF	chr1:40839980-40840236(+)$1	256	121	129	16.4603
KKEEEEE{	chr7:111202348-111202594(-)$1	246	4	12	16.3809
rrrrrrrf	chr7:111202238-111202521(-)$1	283	8	16	16.5396
d[ccc[gg	chr9:140149654-140149968(+)$1	314	4	12	16.5396
eqqqqqqq	chr12:30907473-30907727(-)$1	254	163	171	20.7460
ZZZEEEEE	chr19:49606801-49607061(+)$1	260	96	104	20.7460
LLCCCKKD	chr11:62432687-62432933(+)$1	246	49	57	20.7460
44gggggg	chr5:176980302-176980544(-)$1	242	69	77	16.7777
[ccc[aoo	chr17:79373147-79373416(+)$1	269	18	26	16.6190
GGGbbeee	chr3:160117338-160117591(+)$1	253	136	144	16.0634
KFFFFFFK	chr11:85779964-85780214(-)$1	250	5	13	20.7460
DDDD{EEE	chr16:75018806-75019087(-)$1	281	3	11	16.3809
GGGGGddd	chr12:56693895-56694180(-)$1	285	7	15	16.5396
====####	chr3:32726578-32726870(+)$1	292	35	43	20.7460
d"""bb!!	chr11:2018862-2019127(-)$1	265	6	14	16.5396
&eeeee[c	chr1:247095052-247095317(-)$1	265	51	59	16.3809
ee333ggg	chr11:292905-293158(+)$1	253	105	113	16.4603
EEELLLCC	chr3:195808608-195808869(-)$1	261	10	18	16.4603
hhhhhhhh	chr22:42229065-42229339(+)$1	274	19	27	20.7460
GGGGGGBB	chr20:5591231-5591489(-)$1	258	18	26	16.1428
eeee:a[g	chr1:109289227-109289509(+)$1	282	46	54	20.7460
CC}CCCEE	chr19:5719967-5720250(-)$1	283	190	198	20.7460
fff]a:bb	chr12:30907426-30907673(-)$1	247	109	117	20.7460
ffffff++	chr9:101867328-101867596(+)$1	268	81	89	16.3809
{DDDDLLL	chr1:150947034-150947297(-)$1	263	66	74	16.5396
}FFFFFF~	chr20:34252555-34252826(-)$1	271	210	218	20.7460
DDDD}GGG	chrX:102941445-102941726(-)$1	281	173	181	16.3809
DDbb[ccc	chr7:102119210-102119445(-)$1	235	127	135	16.6190

#DB
).)))).)	chr2:61765237-61765499(-)$1	1	247	255	16.4603
((((((((	chr4:38666206-38666477(+)$1	1	5	13	16.3015
((((...)	chr19:21295886-21296119(-)$1	1	125	133	15.9047
((((((..	chr7:148580695-148580982(-)$1	1	39	47	16.2222
))))))))	chr1:162467538-162467821(+)$1	1	274	282	16.3809
))))((((	chr12:56122010-56122239(-)$1	1	201	209	16.3809
((((((((	chr17:80478114-80478376(+)$1	1	81	89	20.7460
((((..((	chr8:145650730-145651010(-)$1	1	104	112	16.4603
(..(((((	chr11:16760121-16760443(+)$1	1	36	44	16.3015
)))).(.(	chr1:1243139-1243406(-)$1	1	70	78	20.7460
.......(	chr19:50180394-50180674(+)$1	1	130	138	16.1428
...(((((	chr1:87380366-87380605(+)$1	1	19	27	16.7777
(.(((...	chr1:245026667-245026910(-)$1	1	17	25	16.6190
)..)))))	chr8:17941466-17941707(-)$1	1	60	68	16.3809
))))))))	chr3:183602431-183602779(-)$1	1	334	342	16.3809
.))).)..	chr16:2587900-2588217(+)$1	1	309	317	16.7777
)))(((((	chr18:77867064-77867406(+)$1	1	137	145	16.3809
).))))).	chr17:55333991-55334261(+)$1	1	93	101	20.7460
)))))).)	chr7:5569887-5570167(-)$1	1	250	258	20.7460
).))))))	chr3:42845817-42846087(-)$1	1	206	214	20.7460
))))))))	chr7:148580936-148581194(-)$1	1	195	203	20.7460
(((((((.	chr3:37284660-37284985(+)$1	1	140	148	16.4603
)).)))).	chr7:140098119-140098410(-)$1	1	232	240	20.7460
....))))	chr19:5719788-5720057(-)$1	1	155	163	16.3809
(......)	chr19:56166205-56166472(+)$1	1	69	77	16.3809
))).))))	chr1:16939857-16940138(-)$1	1	99	107	16.4603
((((..((	chr19:1269236-1269507(+)$1	1	41	49	20.7460
..((((((	chr6:111136445-111136688(-)$1	1	6	14	20.7460
..(((((.	chr12:125398683-125398946(-)$1	1	2	10	16.7777
(((((.((	chr22:26985815-26986070(-)$1	1	66	74	16.3015
))((((((	chr6:16129259-16129557(+)$1	1	12	20	20.7460
(((.....	chr17:62502001-62502242(-)$1	1	96	104	16.5396
).)).)))	chr3:122785815-122786174(+)$1	1	77	85	16.7777
((((((((	chr3:195808803-195809051(-)$1	1	42	50	20.7460
((..(..(	chr19:18548149-18548396(-)$1	1	44	52	20.7460
)))..)))	chr1:40839980-40840236(+)$1	1	121	129	16.4603
..(((((.	chr7:111202348-111202594(-)$1	1	4	12	16.3809
.......)	chr7:111202238-111202521(-)$1	1	8	16	16.5396
(.(((.((	chr9:140149654-140149968(+)$1	1	4	12	16.5396
(.......	chr12:30907473-30907727(-)$1	1	163	171	20.7460
...)))))	chr19:49606801-49607061(+)$1	1	96	104	20.7460
..(((..(	chr11:62432687-62432933(+)$1	1	49	57	20.7460
..))))))	chr5:176980302-176980544(-)$1	1	69	77	16.7777
.(((.(..	chr17:79373147-79373416(+)$1	1	18	26	16.6190
((((((((	chr3:160117338-160117591(+)$1	1	136	144	16.0634
.((((((.	chr11:85779964-85780214(-)$1	1	5	13	20.7460
((((.(((	chr16:75018806-75019087(-)$1	1	3	11	16.3809
((((((((	chr12:56693895-56694180(-)$1	1	7	15	16.5396
((((....	chr3:32726578-32726870(+)$1	1	35	43	20.7460
(...((..	chr11:2018862-2019127(-)$1	1	6	14	16.5396
.(((((.(	chr1:247095052-247095317(-)$1	1	51	59	16.3809
))...)))	chr11:292905-293158(+)$1	1	105	113	16.4603
(((...((	chr3:195808608-195808869(-)$1	1	10	18	16.4603
((((((((	chr22:42229065-42229339(+)$1	1	19	27	20.7460
((((((((	chr20:5591231-5591489(-)$1	1	18	26	16.1428
)))).(.(	chr1:109289227-109289509(+)$1	1	46	54	20.7460
)).)))))	chr19:5719967-5720250(-)$1	1	190	198	20.7460
))).).((	chr12:30907426-30907673(-)$1	1	109	117	20.7460
((((((..	chr9:101867328-101867596(+)$1	1	81	89	16.3809
.((((...	chr1:150947034-150947297(-)$1	1	66	74	16.5396
.)))))).	chr20:34252555-34252826(-)$1	1	210	218	20.7460
)))).)))	chrX:102941445-102941726(-)$1	1	173	181	16.3809
((((.(((	chr7:102119210-102119445(-)$1	1	127	135	16.6190

#PSSM
G : 0.74	g : 0.14	A : 0.04	U : 0.04	c : 0.01	
G : 0.71	g : 0.15	C : 0.04	A : 0.04	a : 0.03	
G : 0.77	g : 0.17	U : 0.01	A : 0.01	u : 0.01	
G : 0.80	g : 0.17	u : 0.01	
C : 0.73	c : 0.17	A : 0.04	U : 0.03	G : 0.01	
G : 0.76	g : 0.15	U : 0.06	c : 0.01	
G : 0.74	g : 0.15	C : 0.03	U : 0.03	A : 0.01	a : 0.01	
G : 0.74	g : 0.17	A : 0.04	C : 0.03	

#score	1130.5714285714273
#seq	63
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_CDS_m2_run1.nuc.txt

#NT
GAG	chr19:10224165-10224415(+)$1	250	3	6	8.9999
GAG	chr20:36014323-36014601(+)$1	278	42	45	8.9999
GAG	chr1:226053556-226053828(-)$1	272	35	38	8.9999
GAG	chr11:1008923-1009217(+)$1	294	16	19	8.9999
GAG	chr19:799227-799516(+)$1	289	30	33	8.9999
GAG	chr12:57909770-57910010(+)$1	240	6	9	8.9999
GAG	chr22:50882111-50882405(+)$1	294	9	12	8.9999
gag	chr9:127620235-127620498(-)$1	263	5	8	8.9999
GAG	chr2:101648729-101649011(-)$1	282	158	161	8.9999
GAG	chrX:70518224-70518459(+)$1	235	74	77	8.9999
gag	chr1:1686029-1686325(-)$1	296	30	33	8.9999
gag	chr15:91475216-91475494(-)$1	278	19	22	8.9999
GAG	chr19:11143815-11144090(+)$1	275	46	49	8.9999
GAG	chr9:140166379-140166645(+)$1	266	8	11	8.9999
GAG	chr1:26152942-26153206(+)$1	264	9	12	8.9999
GAG	chr7:100855116-100855375(-)$1	259	22	25	8.9999
GAG	chr4:83763509-83763790(-)$1	281	76	79	8.9999
GAG	chr16:2313172-2313458(-)$1	286	51	54	8.9999
GAG	chr1:153719656-153719906(+)$1	250	127	130	8.9999
GAG	chr20:60589656-60589928(-)$1	272	24	27	8.9999
GAG	chr16:46962663-46962931(+)$1	268	33	36	8.9999
GAG	chr10:3822310-3822583(-)$1	273	15	18	8.9999
gag	chr9:34648592-34648886(+)$1	294	43	46	8.9999
GAG	chr10:101576881-101577202(+)$1	321	4	7	8.9999
GAG	chr16:67981951-67982219(-)$1	268	9	12	8.9999
GAG	chr16:16101493-16101779(+)$1	286	69	72	8.9999
GAG	chr17:77081850-77082139(+)$1	289	15	18	8.9999
GAG	chr20:42194887-42195214(+)$1	327	15	18	8.9999
GAG	chr22:22313484-22313756(-)$1	272	96	99	8.9999
GAG	chr6:31918812-31919043(+)$1	231	40	43	8.9999
GAG	chr17:39976369-39976636(+)$1	267	87	90	8.9999
GAG	chr19:19636844-19637052(+)$1	208	10	13	8.9999
GAG	chr17:171092-171368(-)$1	276	112	115	8.9999
GAG	chr17:42155932-42156210(-)$1	278	26	29	8.9999
GAG	chr21:46696954-46697236(-)$1	282	0	3	8.9999
GAG	chr20:39791442-39791711(+)$1	269	54	57	8.9999
GAG	chr11:644546-644804(-)$1	258	22	25	8.9999
GAG	chr9:116831952-116832193(-)$1	241	18	21	8.9999
GAG	chr19:35502210-35502483(+)$1	273	90	93	8.9999
GAG	chr3:49459597-49459877(-)$1	280	92	95	8.9999
GAG	chrX:152958310-152958596(+)$1	286	58	61	8.9999
GAG	chr6:3289995-3290292(-)$1	297	14	17	8.9999
GAG	chr9:139686225-139686515(+)$1	290	34	37	8.9999
GAG	chr20:47629938-47630211(+)$1	273	51	54	8.9999
GAG	chr3:48459343-48459621(-)$1	278	65	68	8.9999
GAG	chr3:14180509-14180783(+)$1	274	29	32	8.9999
GAG	chr2:74593640-74593904(-)$1	264	29	32	8.9999
GAG	chr9:117130768-117131037(-)$1	269	79	82	8.9999
GAG	chr13:113976410-113976715(+)$1	305	12	15	8.9999
GAG	chr1:45323377-45323625(-)$1	248	16	19	8.9999
GAG	chr22:50885561-50885827(-)$1	266	2	5	8.9999
GAG	chr9:130570900-130571180(+)$1	280	5	8	8.9999
GAG	chr10:95353686-95353926(-)$1	240	66	69	8.9999
GAG	chr2:21257667-21257919(-)$1	252	67	70	8.9999
GAG	chr7:966163-966433(-)$1	270	4	7	8.9999
GAG	chr22:31493098-31493355(+)$1	257	13	16	8.9999
GAG	chr1:37947027-37947305(+)$1	278	12	15	8.9999
GAG	chr22:21075585-21075864(-)$1	279	19	22	8.9999
GAG	chr12:6950595-6950861(+)$1	266	2	5	8.9999
GAG	chr11:2943193-2943495(+)$1	302	1	4	8.9999
GAG	chr1:896533-896773(+)$1	240	4	7	8.9999
GAG	chr6:28872313-28872593(-)$1	280	72	75	8.9999
GAG	chr10:101591572-101591845(+)$1	273	189	192	8.9999
GAG	chr13:113835440-113835712(-)$1	272	46	49	8.9999
GAG	chr9:37429538-37429838(+)$1	300	55	58	8.9999
GAG	chr1:19422037-19422296(-)$1	259	5	8	8.9999
GAG	chr16:4727293-4727565(+)$1	272	108	111	8.9999
GAG	chr20:39791844-39792128(+)$1	284	5	8	8.9999
GAG	chr2:242611431-242611708(+)$1	277	75	78	8.9999
GAG	chr2:75107227-75107504(+)$1	277	23	26	8.9999
GAG	chr12:6471302-6471556(-)$1	254	208	211	8.9999
GAG	chr11:3041458-3041699(-)$1	241	8	11	8.9999
GAG	chr12:6657223-6657467(-)$1	244	159	162	8.9999
GAG	chr19:19459543-19459815(+)$1	272	3	6	8.9999
GAG	chr2:27448821-27449115(+)$1	294	15	18	8.9999
GAG	chr12:1909117-1909368(-)$1	251	16	19	8.9999
GAG	chr1:111991265-111991599(-)$1	334	44	47	8.9999
GAG	chrX:47106857-47107111(+)$1	254	32	35	8.9999
GAG	chr17:77809393-77809689(-)$1	296	4	7	8.9999
GAG	chr1:156236040-156236316(-)$1	276	77	80	8.9999
GAG	chr6:32147642-32147896(+)$1	254	41	44	8.9999
GAG	chr6:4953978-4954240(+)$1	262	20	23	8.9999
GAG	chr3:8675513-8675787(-)$1	274	160	163	8.9999
GAG	chr1:227077538-227077837(+)$1	299	11	14	8.9999
gag	chr17:7216900-7217189(-)$1	289	114	117	8.9999
GAG	chr3:15091307-15091601(-)$1	294	41	44	8.9999
GAG	chr17:27050428-27050694(+)$1	266	84	87	8.9999
GAG	chr11:121483293-121483579(+)$1	286	41	44	8.9999
GAG	chr16:81737382-81737684(+)$1	302	7	10	8.9999
GAG	chr1:165865272-165865550(+)$1	278	158	161	8.9999
GAG	chr7:47467854-47468121(-)$1	267	72	75	8.9999
gag	chr12:132393299-132393549(+)$1	250	97	100	8.9999
GAG	chr16:88599048-88599310(+)$1	262	32	35	8.9999
GAG	chr6:43028873-43029178(+)$1	305	5	8	8.9999
GAG	chr16:87367787-87368042(-)$1	255	0	3	8.9999
GAG	chr20:37125829-37126118(+)$1	289	0	3	8.9999

#otherMatches

#Struct PSSM
:ff	chr12:112605610-112605885(-)$1	275	6	9	8.9999
b[e	chr19:10224165-10224415(+)$1	250	3	6	8.9999
::J	chr20:36014323-36014601(+)$1	278	42	45	8.9999
guu	chr1:226053556-226053828(-)$1	272	35	38	8.9999
ggg	chr11:1008923-1009217(+)$1	294	16	19	8.9999
!!c	chr19:799227-799516(+)$1	289	30	33	8.9999
FFF	chr12:57909770-57910010(+)$1	240	6	9	8.9999
J{C	chr22:50882111-50882405(+)$1	294	9	12	8.9999
:::	chr9:127620235-127620498(-)$1	263	5	8	8.9999
JJJ	chr2:101648729-101649011(-)$1	282	158	161	8.9999
bb!	chrX:70518224-70518459(+)$1	235	74	77	8.9999
:::	chr1:1686029-1686325(-)$1	296	30	33	8.9999
DDC	chr15:91475216-91475494(-)$1	278	19	22	8.9999
iii	chr19:11143815-11144090(+)$1	275	46	49	8.9999
FCC	chr9:140166379-140166645(+)$1	266	8	11	8.9999
oob	chr1:26152942-26153206(+)$1	264	9	12	8.9999
eee	chr7:100855116-100855375(-)$1	259	22	25	8.9999
iii	chr4:83763509-83763790(-)$1	281	76	79	8.9999
hhh	chr16:2313172-2313458(-)$1	286	51	54	8.9999
===	chr1:153719656-153719906(+)$1	250	127	130	8.9999
FFF	chr20:60589656-60589928(-)$1	272	24	27	8.9999
d[c	chr16:46962663-46962931(+)$1	268	33	36	8.9999
eee	chr10:3822310-3822583(-)$1	273	15	18	8.9999
ggg	chr9:34648592-34648886(+)$1	294	43	46	8.9999
EEE	chr10:101576881-101577202(+)$1	321	4	7	8.9999
GGG	chr16:67981951-67982219(-)$1	268	9	12	8.9999
hhh	chr16:16101493-16101779(+)$1	286	69	72	8.9999
III	chr17:77081850-77082139(+)$1	289	15	18	8.9999
ff[	chr20:42194887-42195214(+)$1	327	15	18	8.9999
B{B	chr22:22313484-22313756(-)$1	272	96	99	8.9999
[a[	chr6:31918812-31919043(+)$1	231	40	43	8.9999
fff	chr17:39976369-39976636(+)$1	267	87	90	8.9999
ddd	chr19:19636844-19637052(+)$1	208	10	13	8.9999
dqq	chr17:171092-171368(-)$1	276	112	115	8.9999
bbq	chr17:42155932-42156210(-)$1	278	26	29	8.9999
:::	chr21:46696954-46697236(-)$1	282	0	3	8.9999
ddd	chr20:39791442-39791711(+)$1	269	54	57	8.9999
hhn	chr11:644546-644804(-)$1	258	22	25	8.9999
&&&	chr9:116831952-116832193(-)$1	241	18	21	8.9999
###	chr19:35502210-35502483(+)$1	273	90	93	8.9999
ccc	chr3:49459597-49459877(-)$1	280	92	95	8.9999
ebb	chrX:152958310-152958596(+)$1	286	58	61	8.9999
#bb	chr6:3289995-3290292(-)$1	297	14	17	8.9999
eee	chr9:139686225-139686515(+)$1	290	34	37	8.9999
ddd	chr20:47629938-47630211(+)$1	273	51	54	8.9999
[ap	chr3:48459343-48459621(-)$1	278	65	68	8.9999
b]d	chr3:14180509-14180783(+)$1	274	29	32	8.9999
dd[	chr2:74593640-74593904(-)$1	264	29	32	8.9999
ttb	chr9:117130768-117131037(-)$1	269	79	82	8.9999
hhh	chr13:113976410-113976715(+)$1	305	12	15	8.9999
b[d	chr1:45323377-45323625(-)$1	248	16	19	8.9999
FFF	chr22:50885561-50885827(-)$1	266	2	5	8.9999
{A{	chr9:130570900-130571180(+)$1	280	5	8	8.9999
ccc	chr10:95353686-95353926(-)$1	240	66	69	8.9999
c:b	chr2:21257667-21257919(-)$1	252	67	70	8.9999
dd[	chr7:966163-966433(-)$1	270	4	7	8.9999
eee	chr22:31493098-31493355(+)$1	257	13	16	8.9999
$$$	chr1:37947027-37947305(+)$1	278	12	15	8.9999
DCC	chr22:21075585-21075864(-)$1	279	19	22	8.9999
::C	chr12:6950595-6950861(+)$1	266	2	5	8.9999
GGG	chr11:2943193-2943495(+)$1	302	1	4	8.9999
DLL	chr1:896533-896773(+)$1	240	4	7	8.9999
===	chr6:28872313-28872593(-)$1	280	72	75	8.9999
ggg	chr10:101591572-101591845(+)$1	273	189	192	8.9999
hh+	chr13:113835440-113835712(-)$1	272	46	49	8.9999
EEE	chr9:37429538-37429838(+)$1	300	55	58	8.9999
ggg	chr1:19422037-19422296(-)$1	259	5	8	8.9999
hhh	chr16:4727293-4727565(+)$1	272	108	111	8.9999
ggg	chr20:39791844-39792128(+)$1	284	5	8	8.9999
fff	chr2:242611431-242611708(+)$1	277	75	78	8.9999
DDD	chr2:75107227-75107504(+)$1	277	23	26	8.9999
22c	chr12:6471302-6471556(-)$1	254	208	211	8.9999
ell	chr11:3041458-3041699(-)$1	241	8	11	8.9999
eee	chr12:6657223-6657467(-)$1	244	159	162	8.9999
C{D	chr19:19459543-19459815(+)$1	272	3	6	8.9999
b[g	chr2:27448821-27449115(+)$1	294	15	18	8.9999
d[f	chr12:1909117-1909368(-)$1	251	16	19	8.9999
b::	chr1:111991265-111991599(-)$1	334	44	47	8.9999
nnn	chrX:47106857-47107111(+)$1	254	32	35	8.9999
E:e	chr17:77809393-77809689(-)$1	296	4	7	8.9999
dd[	chr1:156236040-156236316(-)$1	276	77	80	8.9999
DDD	chr6:32147642-32147896(+)$1	254	41	44	8.9999
nnn	chr6:4953978-4954240(+)$1	262	20	23	8.9999
ddd	chr3:8675513-8675787(-)$1	274	160	163	8.9999
HHH	chr1:227077538-227077837(+)$1	299	11	14	8.9999
fff	chr17:7216900-7217189(-)$1	289	114	117	8.9999
ccc	chr3:15091307-15091601(-)$1	294	41	44	8.9999
III	chr17:27050428-27050694(+)$1	266	84	87	8.9999
^^^	chr11:121483293-121483579(+)$1	286	41	44	8.9999
fff	chr16:81737382-81737684(+)$1	302	7	10	8.9999
fff	chr1:165865272-165865550(+)$1	278	158	161	8.9999
c[=	chr7:47467854-47468121(-)$1	267	72	75	8.9999
ggg	chr12:132393299-132393549(+)$1	250	97	100	8.9999
EEE	chr16:88599048-88599310(+)$1	262	32	35	8.9999
hhh	chr6:43028873-43029178(+)$1	305	5	8	8.9999
DDD	chr16:87367787-87368042(-)$1	255	0	3	8.9999
:BB	chr20:37125829-37126118(+)$1	289	0	3	8.9999

#DB
.((	chr12:112605610-112605885(-)$1	1	6	9	8.9999
(.(	chr19:10224165-10224415(+)$1	1	3	6	8.9999
..(	chr20:36014323-36014601(+)$1	1	42	45	8.9999
(..	chr1:226053556-226053828(-)$1	1	35	38	8.9999
(((	chr11:1008923-1009217(+)$1	1	16	19	8.9999
..(	chr19:799227-799516(+)$1	1	30	33	8.9999
(((	chr12:57909770-57910010(+)$1	1	6	9	8.9999
(.(	chr22:50882111-50882405(+)$1	1	9	12	8.9999
...	chr9:127620235-127620498(-)$1	1	5	8	8.9999
)))	chr2:101648729-101649011(-)$1	1	158	161	8.9999
((.	chrX:70518224-70518459(+)$1	1	74	77	8.9999
...	chr1:1686029-1686325(-)$1	1	30	33	8.9999
(((	chr15:91475216-91475494(-)$1	1	19	22	8.9999
(((	chr19:11143815-11144090(+)$1	1	46	49	8.9999
(((	chr9:140166379-140166645(+)$1	1	8	11	8.9999
..)	chr1:26152942-26153206(+)$1	1	9	12	8.9999
(((	chr7:100855116-100855375(-)$1	1	22	25	8.9999
(((	chr4:83763509-83763790(-)$1	1	76	79	8.9999
(((	chr16:2313172-2313458(-)$1	1	51	54	8.9999
)))	chr1:153719656-153719906(+)$1	1	127	130	8.9999
(((	chr20:60589656-60589928(-)$1	1	24	27	8.9999
(.(	chr16:46962663-46962931(+)$1	1	33	36	8.9999
)))	chr10:3822310-3822583(-)$1	1	15	18	8.9999
(((	chr9:34648592-34648886(+)$1	1	43	46	8.9999
(((	chr10:101576881-101577202(+)$1	1	4	7	8.9999
(((	chr16:67981951-67982219(-)$1	1	9	12	8.9999
(((	chr16:16101493-16101779(+)$1	1	69	72	8.9999
(((	chr17:77081850-77082139(+)$1	1	15	18	8.9999
((.	chr20:42194887-42195214(+)$1	1	15	18	8.9999
(.(	chr22:22313484-22313756(-)$1	1	96	99	8.9999
.(.	chr6:31918812-31919043(+)$1	1	40	43	8.9999
(((	chr17:39976369-39976636(+)$1	1	87	90	8.9999
(((	chr19:19636844-19637052(+)$1	1	10	13	8.9999
(..	chr17:171092-171368(-)$1	1	112	115	8.9999
((.	chr17:42155932-42156210(-)$1	1	26	29	8.9999
...	chr21:46696954-46697236(-)$1	1	0	3	8.9999
)))	chr20:39791442-39791711(+)$1	1	54	57	8.9999
((.	chr11:644546-644804(-)$1	1	22	25	8.9999
...	chr9:116831952-116832193(-)$1	1	18	21	8.9999
...	chr19:35502210-35502483(+)$1	1	90	93	8.9999
)))	chr3:49459597-49459877(-)$1	1	92	95	8.9999
(((	chrX:152958310-152958596(+)$1	1	58	61	8.9999
.((	chr6:3289995-3290292(-)$1	1	14	17	8.9999
(((	chr9:139686225-139686515(+)$1	1	34	37	8.9999
(((	chr20:47629938-47630211(+)$1	1	51	54	8.9999
.(.	chr3:48459343-48459621(-)$1	1	65	68	8.9999
).)	chr3:14180509-14180783(+)$1	1	29	32	8.9999
((.	chr2:74593640-74593904(-)$1	1	29	32	8.9999
..)	chr9:117130768-117131037(-)$1	1	79	82	8.9999
(((	chr13:113976410-113976715(+)$1	1	12	15	8.9999
(.(	chr1:45323377-45323625(-)$1	1	16	19	8.9999
(((	chr22:50885561-50885827(-)$1	1	2	5	8.9999
.(.	chr9:130570900-130571180(+)$1	1	5	8	8.9999
(((	chr10:95353686-95353926(-)$1	1	66	69	8.9999
).(	chr2:21257667-21257919(-)$1	1	67	70	8.9999
((.	chr7:966163-966433(-)$1	1	4	7	8.9999
)))	chr22:31493098-31493355(+)$1	1	13	16	8.9999
...	chr1:37947027-37947305(+)$1	1	12	15	8.9999
(((	chr22:21075585-21075864(-)$1	1	19	22	8.9999
..(	chr12:6950595-6950861(+)$1	1	2	5	8.9999
(((	chr11:2943193-2943495(+)$1	1	1	4	8.9999
(..	chr1:896533-896773(+)$1	1	4	7	8.9999
(((	chr6:28872313-28872593(-)$1	1	72	75	8.9999
)))	chr10:101591572-101591845(+)$1	1	189	192	8.9999
((.	chr13:113835440-113835712(-)$1	1	46	49	8.9999
(((	chr9:37429538-37429838(+)$1	1	55	58	8.9999
(((	chr1:19422037-19422296(-)$1	1	5	8	8.9999
(((	chr16:4727293-4727565(+)$1	1	108	111	8.9999
(((	chr20:39791844-39792128(+)$1	1	5	8	8.9999
(((	chr2:242611431-242611708(+)$1	1	75	78	8.9999
(((	chr2:75107227-75107504(+)$1	1	23	26	8.9999
..)	chr12:6471302-6471556(-)$1	1	208	211	8.9999
(..	chr11:3041458-3041699(-)$1	1	8	11	8.9999
)))	chr12:6657223-6657467(-)$1	1	159	162	8.9999
(.(	chr19:19459543-19459815(+)$1	1	3	6	8.9999
(.(	chr2:27448821-27449115(+)$1	1	15	18	8.9999
(.(	chr12:1909117-1909368(-)$1	1	16	19	8.9999
)..	chr1:111991265-111991599(-)$1	1	44	47	8.9999
...	chrX:47106857-47107111(+)$1	1	32	35	8.9999
(.(	chr17:77809393-77809689(-)$1	1	4	7	8.9999
((.	chr1:156236040-156236316(-)$1	1	77	80	8.9999
(((	chr6:32147642-32147896(+)$1	1	41	44	8.9999
...	chr6:4953978-4954240(+)$1	1	20	23	8.9999
)))	chr3:8675513-8675787(-)$1	1	160	163	8.9999
(((	chr1:227077538-227077837(+)$1	1	11	14	8.9999
(((	chr17:7216900-7217189(-)$1	1	114	117	8.9999
(((	chr3:15091307-15091601(-)$1	1	41	44	8.9999
)))	chr17:27050428-27050694(+)$1	1	84	87	8.9999
...	chr11:121483293-121483579(+)$1	1	41	44	8.9999
(((	chr16:81737382-81737684(+)$1	1	7	10	8.9999
(((	chr1:165865272-165865550(+)$1	1	158	161	8.9999
(.(	chr7:47467854-47468121(-)$1	1	72	75	8.9999
(((	chr12:132393299-132393549(+)$1	1	97	100	8.9999
(((	chr16:88599048-88599310(+)$1	1	32	35	8.9999
(((	chr6:43028873-43029178(+)$1	1	5	8	8.9999
(((	chr16:87367787-87368042(-)$1	1	0	3	8.9999
.((	chr20:37125829-37126118(+)$1	1	0	3	8.9999

#PSSM
G : 0.92	g : 0.07	
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_transcript_m3_run2.nuc.txt

#NT
CUGG	chr12:110719310-110719663(+)$1	353	27	31	12.0000
cugg	chr8:9629474-9629789(+)$1	315	296	300	12.0000
CUGG	chr2:203142732-203142979(+)$1	247	204	208	12.0000
CUGG	chr17:80045175-80045413(-)$1	238	64	68	12.0000
CUGG	chr1:28905192-28905433(-)$1	241	100	104	12.0000
CUGG	chr1:173835929-173836179(-)$1	250	6	10	12.0000
CUGG	chr19:3982436-3982662(-)$1	226	35	39	12.0000
CUGG	chr12:123994742-123995032(-)$1	290	151	155	12.0000
CUGG	chr8:1780087-1780376(+)$1	289	81	85	12.0000
CUGG	chr2:203141052-203141317(+)$1	265	207	211	12.0000
CUGG	chr19:12814338-12814589(-)$1	251	13	17	12.0000
CUGg	chr11:93454578-93454874(+)$1	296	250	254	12.0000
CUGG	chr22:19418924-19419268(-)$1	344	289	293	12.0000
CUGg	chr11:93454801-93455112(+)$1	311	27	31	12.0000
CUGG	chr19:10220349-10220572(+)$1	223	17	21	12.0000
CUGG	chrX:20154135-20154420(-)$1	285	38	42	12.0000
CUGG	chr16:89023319-89023608(-)$1	289	60	64	12.0000
cugg	chr16:85689999-85690336(+)$1	337	112	116	12.0000
CUGG	chr22:23522678-23522941(+)$1	263	55	59	12.0000
CUGG	chr1:28907247-28907486(-)$1	239	174	178	12.0000
CUGG	chr13:92000677-92000958(+)$1	281	149	153	12.0000
CUGG	chr17:16342770-16343036(+)$1	266	30	34	12.0000
CUGG	chr1:234744798-234745071(-)$1	273	254	258	12.0000
CUGG	chr6:133136352-133136583(+)$1	231	201	205	12.0000
cugg	chr8:9629638-9629902(+)$1	264	132	136	12.0000
CUGG	chr17:2232359-2232588(-)$1	229	52	56	12.0000
CUGG	chr19:4037223-4037473(+)$1	250	3	7	12.0000
CUGG	chr16:2809272-2809501(+)$1	229	214	218	12.0000
CUGG	chr9:139734826-139735104(+)$1	278	76	80	12.0000
CUGG	chr13:92000553-92000789(+)$1	236	59	63	12.0000
CUGG	chr1:31440966-31441180(-)$1	214	98	102	12.0000
CUGG	chr17:27050608-27050830(+)$1	222	11	15	12.0000
CUGG	chr1:31440943-31441165(-)$1	222	83	87	12.0000
CUGG	chr22:21800173-21800439(+)$1	266	47	51	12.0000
CUGG	chr17:27049499-27049711(+)$1	212	67	71	12.0000
CUGG	chr19:10220339-10220549(+)$1	210	27	31	12.0000
CUGG	chr17:27047463-27047725(+)$1	262	12	16	12.0000
cugg	chr1:1284370-1284623(-)$1	253	24	28	12.0000
CUGG	chr7:45144136-45144441(-)$1	305	46	50	12.0000
CUGG	chrX:20154220-20154509(-)$1	289	127	131	12.0000
CUGG	chr10:35625521-35625813(+)$1	292	96	100	12.0000

#otherMatches

#Struct PSSM
ccbb	chr8:144940390-144940802(-)$1	412	38	42	12.0000
=mmm	chr12:110719310-110719663(+)$1	353	27	31	12.0000
ccrr	chr8:9629474-9629789(+)$1	315	296	300	12.0000
qqqq	chr2:203142732-203142979(+)$1	247	204	208	12.0000
EEEE	chr17:80045175-80045413(-)$1	238	64	68	12.0000
bb[e	chr1:28905192-28905433(-)$1	241	100	104	12.0000
ggg#	chr1:173835929-173836179(-)$1	250	6	10	12.0000
CC{D	chr19:3982436-3982662(-)$1	226	35	39	12.0000
3ddd	chr12:123994742-123995032(-)$1	290	151	155	12.0000
ff:b	chr8:1780087-1780376(+)$1	289	81	85	12.0000
#ccc	chr2:203141052-203141317(+)$1	265	207	211	12.0000
ssee	chr19:12814338-12814589(-)$1	251	13	17	12.0000
nnnf	chr11:93454578-93454874(+)$1	296	250	254	12.0000
ddd[	chr22:19418924-19419268(-)$1	344	289	293	12.0000
MMFF	chr11:93454801-93455112(+)$1	311	27	31	12.0000
eeee	chr19:10220349-10220572(+)$1	223	17	21	12.0000
B{CC	chrX:20154135-20154420(-)$1	285	38	42	12.0000
dd22	chr16:89023319-89023608(-)$1	289	60	64	12.0000
eeee	chr16:85689999-85690336(+)$1	337	112	116	12.0000
ffff	chr22:23522678-23522941(+)$1	263	55	59	12.0000
dbb]	chr1:28907247-28907486(-)$1	239	174	178	12.0000
cc22	chr13:92000677-92000958(+)$1	281	149	153	12.0000
ddd:	chr17:16342770-16343036(+)$1	266	30	34	12.0000
dddd	chr1:234744798-234745071(-)$1	273	254	258	12.0000
ddll	chr6:133136352-133136583(+)$1	231	201	205	12.0000
cccb	chr8:9629638-9629902(+)$1	264	132	136	12.0000
gggl	chr17:2232359-2232588(-)$1	229	52	56	12.0000
ffff	chr19:4037223-4037473(+)$1	250	3	7	12.0000
rrrr	chr16:2809272-2809501(+)$1	229	214	218	12.0000
EEEE	chr9:139734826-139735104(+)$1	278	76	80	12.0000
d[cc	chr13:92000553-92000789(+)$1	236	59	63	12.0000
ffff	chr1:31440966-31441180(-)$1	214	98	102	12.0000
::CC	chr17:27050608-27050830(+)$1	222	11	15	12.0000
ffff	chr1:31440943-31441165(-)$1	222	83	87	12.0000
BB{F	chr22:21800173-21800439(+)$1	266	47	51	12.0000
====	chr17:27049499-27049711(+)$1	212	67	71	12.0000
eeee	chr19:10220339-10220549(+)$1	210	27	31	12.0000
QQFF	chr17:27047463-27047725(+)$1	262	12	16	12.0000
hhhh	chr1:1284370-1284623(-)$1	253	24	28	12.0000
GGGG	chr7:45144136-45144441(-)$1	305	46	50	12.0000
dd44	chrX:20154220-20154509(-)$1	289	127	131	12.0000
dddd	chr10:35625521-35625813(+)$1	292	96	100	12.0000

#DB
((((	chr8:144940390-144940802(-)$1	1	38	42	12.0000
(...	chr12:110719310-110719663(+)$1	1	27	31	12.0000
((..	chr8:9629474-9629789(+)$1	1	296	300	12.0000
....	chr2:203142732-203142979(+)$1	1	204	208	12.0000
((((	chr17:80045175-80045413(-)$1	1	64	68	12.0000
((.(	chr1:28905192-28905433(-)$1	1	100	104	12.0000
(((.	chr1:173835929-173836179(-)$1	1	6	10	12.0000
((.(	chr19:3982436-3982662(-)$1	1	35	39	12.0000
.)))	chr12:123994742-123995032(-)$1	1	151	155	12.0000
)).(	chr8:1780087-1780376(+)$1	1	81	85	12.0000
.(((	chr2:203141052-203141317(+)$1	1	207	211	12.0000
..))	chr19:12814338-12814589(-)$1	1	13	17	12.0000
...)	chr11:93454578-93454874(+)$1	1	250	254	12.0000
(((.	chr22:19418924-19419268(-)$1	1	289	293	12.0000
..((	chr11:93454801-93455112(+)$1	1	27	31	12.0000
((((	chr19:10220349-10220572(+)$1	1	17	21	12.0000
(.((	chrX:20154135-20154420(-)$1	1	38	42	12.0000
))..	chr16:89023319-89023608(-)$1	1	60	64	12.0000
((((	chr16:85689999-85690336(+)$1	1	112	116	12.0000
))))	chr22:23522678-23522941(+)$1	1	55	59	12.0000
))).	chr1:28907247-28907486(-)$1	1	174	178	12.0000
))..	chr13:92000677-92000958(+)$1	1	149	153	12.0000
))).	chr17:16342770-16343036(+)$1	1	30	34	12.0000
))))	chr1:234744798-234745071(-)$1	1	254	258	12.0000
((..	chr6:133136352-133136583(+)$1	1	201	205	12.0000
)))(	chr8:9629638-9629902(+)$1	1	132	136	12.0000
(((.	chr17:2232359-2232588(-)$1	1	52	56	12.0000
((((	chr19:4037223-4037473(+)$1	1	3	7	12.0000
....	chr16:2809272-2809501(+)$1	1	214	218	12.0000
((((	chr9:139734826-139735104(+)$1	1	76	80	12.0000
(.((	chr13:92000553-92000789(+)$1	1	59	63	12.0000
((((	chr1:31440966-31441180(-)$1	1	98	102	12.0000
..((	chr17:27050608-27050830(+)$1	1	11	15	12.0000
((((	chr1:31440943-31441165(-)$1	1	83	87	12.0000
((.(	chr22:21800173-21800439(+)$1	1	47	51	12.0000
((((	chr17:27049499-27049711(+)$1	1	67	71	12.0000
((((	chr19:10220339-10220549(+)$1	1	27	31	12.0000
..((	chr17:27047463-27047725(+)$1	1	12	16	12.0000
((((	chr1:1284370-1284623(-)$1	1	24	28	12.0000
((((	chr7:45144136-45144441(-)$1	1	46	50	12.0000
))..	chrX:20154220-20154509(-)$1	1	127	131	12.0000
))))	chr10:35625521-35625813(+)$1	1	96	100	12.0000

#PSSM
C : 0.90	c : 0.09	
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	
G : 0.85	g : 0.14	

#score	504.00000000000006
#seq	42
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_UTR_m1_run1.nuc.txt

#NT
CUCU	chr19:41131752-41132006(+)$1	254	140	144	11.9999
CUCU	chr2:10924337-10924552(-)$1	215	21	25	11.9999
CUCU	chr12:8085539-8085816(-)$1	277	126	130	11.9999
CUCU	chr22:35799139-35799423(+)$1	284	12	16	11.9999
CUCU	chr11:1774634-1774898(-)$1	264	19	23	11.9999
CUCU	chr1:19948533-19948741(+)$1	208	50	54	11.9999
CUCU	chr7:100858269-100858501(-)$1	232	170	174	11.9999
CUCU	chr19:14675789-14676019(+)$1	230	79	83	11.9999
CUCU	chr6:150070930-150071184(+)$1	254	35	39	11.9999
CUCU	chr1:155981510-155981779(-)$1	269	106	110	11.9999
CUCU	chr19:14675913-14676127(+)$1	214	150	154	11.9999
CUCU	chr17:1673133-1673390(+)$1	257	172	176	11.9999
CUCU	chr11:118921658-118921922(-)$1	264	18	22	11.9999
CUCU	chr1:161479508-161479780(+)$1	272	34	38	11.9999
CUCU	chr1:165712303-165712545(-)$1	242	35	39	11.9999
CUCU	chr4:99997754-99997978(-)$1	224	24	28	11.9999
cucu	chr5:179146638-179146874(+)$1	236	216	220	11.9999
CUCU	chr11:118922913-118923193(-)$1	280	43	47	11.9999
CUCU	chr1:165712345-165712629(-)$1	284	119	123	11.9999
cucu	chr14:68159053-68159313(-)$1	260	235	239	11.9999
CUCU	chr5:133944003-133944294(-)$1	291	47	51	11.9999
CUCU	chr16:74503782-74504041(-)$1	259	55	59	11.9999
CUCU	chr19:14675542-14675771(+)$1	229	110	114	11.9999
CUCU	chr7:56142177-56142430(+)$1	253	115	119	11.9999
CUCU	chr11:62652725-62652929(+)$1	204	199	203	11.9999
CUCU	chr12:46754762-46755092(-)$1	330	83	87	11.9999
CUCU	chr3:195791124-195791341(-)$1	217	22	26	11.9999
CUCU	chr4:110972665-110972932(-)$1	267	93	97	11.9999
CUCU	chr1:120254509-120254845(+)$1	336	54	58	11.9999
CUCU	chr6:30690601-30690843(+)$1	242	5	9	11.9999
CUCU	chr17:79805106-79805323(-)$1	217	84	88	11.9999
CUCU	chr1:43212279-43212588(-)$1	309	33	37	11.9999
CUCU	chr5:179149823-179150032(+)$1	209	88	92	11.9999
CUCU	chr3:195794802-195795016(-)$1	214	209	213	11.9999
CUCU	chr17:26883744-26883982(-)$1	238	33	37	11.9999
CUCU	chr11:118921722-118921960(-)$1	238	56	60	11.9999
CUCU	chr11:118920394-118920649(-)$1	255	152	156	11.9999
CUCU	chr3:33110214-33110489(-)$1	275	198	202	11.9999
CUCU	chr10:106027019-106027265(+)$1	246	99	103	11.9999
CUCU	chr1:160969348-160969632(-)$1	284	224	228	11.9999
CUCU	chr11:62397752-62397975(-)$1	223	96	100	11.9999
CUCU	chr12:56119237-56119499(-)$1	262	19	23	11.9999
CUCU	chr12:56120383-56120660(-)$1	277	74	78	11.9999
CUCU	chr11:62402356-62402567(-)$1	211	1	5	11.9999
CUCU	chr19:35657052-35657257(+)$1	205	73	77	11.9999
CUCU	chr6:26205073-26205345(+)$1	272	88	92	11.9999
CUCU	chr7:6513723-6513940(-)$1	217	19	23	11.9999
CUCU	chr19:49408969-49409241(+)$1	272	28	32	11.9999
CUCU	chr19:18287847-18288097(+)$1	250	0	4	11.9999
CUCU	chr16:74502743-74502988(-)$1	245	71	75	11.9999
CUCU	chr19:14675660-14675881(+)$1	221	92	96	11.9999
CUCU	chrX:153663384-153663630(+)$1	246	39	43	11.9999
CUCU	chr15:45007727-45007940(+)$1	213	75	79	11.9999
CUCU	chr15:44053525-44053735(+)$1	210	144	148	11.9999
cucu	chr3:14499359-14499574(+)$1	215	40	44	11.9999
CUCU	chr1:165712429-165712648(-)$1	219	11	15	11.9999
CUCU	chr17:28789287-28789588(+)$1	301	271	275	11.9999
CUCU	chr12:58089694-58089921(+)$1	227	9	13	11.9999
CUCU	chr11:63520440-63520662(+)$1	222	198	202	11.9999
CUCU	chr1:155987971-155988245(-)$1	274	190	194	11.9999
CUCU	chr15:89444681-89444895(-)$1	214	18	22	11.9999
CUCU	chr17:57888965-57889238(+)$1	273	55	59	11.9999
CUCU	chr11:130003495-130003723(+)$1	228	3	7	11.9999
CUCU	chr15:79227217-79227450(-)$1	233	152	156	11.9999
CUCU	chr3:195789624-195789830(-)$1	206	11	15	11.9999
CUCU	chr5:179143157-179143389(+)$1	232	224	228	11.9999
CUCU	chrX:153662636-153662850(+)$1	214	54	58	11.9999
CUCU	chr12:58089644-58089858(+)$1	214	59	63	11.9999
CUCU	chr1:181059133-181059415(+)$1	282	14	18	11.9999
CUCU	chr5:179135891-179136132(+)$1	241	73	77	11.9999
CUCU	chr12:56120852-56121084(-)$1	232	44	48	11.9999
CUCU	chr1:160969945-160970215(-)$1	270	66	70	11.9999
CUCU	chr12:98993730-98993984(+)$1	254	22	26	11.9999
CUCU	chrX:65393498-65393740(+)$1	242	124	128	11.9999

#otherMatches

#Struct PSSM
gggg	chr4:145039777-145040006(-)$1	229	129	133	11.9999
b22f	chr19:41131752-41132006(+)$1	254	140	144	11.9999
==++	chr2:10924337-10924552(-)$1	215	21	25	11.9999
oooo	chr12:8085539-8085816(-)$1	277	126	130	11.9999
eee[	chr22:35799139-35799423(+)$1	284	12	16	11.9999
FFFF	chr11:1774634-1774898(-)$1	264	19	23	11.9999
ccoo	chr1:19948533-19948741(+)$1	208	50	54	11.9999
gggg	chr7:100858269-100858501(-)$1	232	170	174	11.9999
====	chr19:14675789-14676019(+)$1	230	79	83	11.9999
mmmm	chr6:150070930-150071184(+)$1	254	35	39	11.9999
nnnn	chr1:155981510-155981779(-)$1	269	106	110	11.9999
D~~~	chr19:14675913-14676127(+)$1	214	150	154	11.9999
qqqq	chr17:1673133-1673390(+)$1	257	172	176	11.9999
ff[b	chr11:118921658-118921922(-)$1	264	18	22	11.9999
%%%c	chr1:161479508-161479780(+)$1	272	34	38	11.9999
^^^^	chr1:165712303-165712545(-)$1	242	35	39	11.9999
ee!!	chr4:99997754-99997978(-)$1	224	24	28	11.9999
====	chr5:179146638-179146874(+)$1	236	216	220	11.9999
A{CC	chr11:118922913-118923193(-)$1	280	43	47	11.9999
::II	chr1:165712345-165712629(-)$1	284	119	123	11.9999
HHHH	chr14:68159053-68159313(-)$1	260	235	239	11.9999
FFFF	chr5:133944003-133944294(-)$1	291	47	51	11.9999
fccc	chr16:74503782-74504041(-)$1	259	55	59	11.9999
^^^^	chr19:14675542-14675771(+)$1	229	110	114	11.9999
c333	chr7:56142177-56142430(+)$1	253	115	119	11.9999
gggg	chr11:62652725-62652929(+)$1	204	199	203	11.9999
deee	chr12:46754762-46755092(-)$1	330	83	87	11.9999
^^^^	chr3:195791124-195791341(-)$1	217	22	26	11.9999
eell	chr4:110972665-110972932(-)$1	267	93	97	11.9999
dddd	chr1:120254509-120254845(+)$1	336	54	58	11.9999
::::	chr6:30690601-30690843(+)$1	242	5	9	11.9999
fhhh	chr17:79805106-79805323(-)$1	217	84	88	11.9999
BEEE	chr1:43212279-43212588(-)$1	309	33	37	11.9999
d]a:	chr5:179149823-179150032(+)$1	209	88	92	11.9999
::::	chr3:195794802-195795016(-)$1	214	209	213	11.9999
+++d	chr17:26883744-26883982(-)$1	238	33	37	11.9999
ff[b	chr11:118921722-118921960(-)$1	238	56	60	11.9999
dddd	chr11:118920394-118920649(-)$1	255	152	156	11.9999
ddd]	chr3:33110214-33110489(-)$1	275	198	202	11.9999
gggb	chr10:106027019-106027265(+)$1	246	99	103	11.9999
mmmm	chr1:160969348-160969632(-)$1	284	224	228	11.9999
gggg	chr11:62397752-62397975(-)$1	223	96	100	11.9999
::::	chr12:56119237-56119499(-)$1	262	19	23	11.9999
ee55	chr12:56120383-56120660(-)$1	277	74	78	11.9999
::::	chr11:62402356-62402567(-)$1	211	1	5	11.9999
dd]d	chr19:35657052-35657257(+)$1	205	73	77	11.9999
neee	chr6:26205073-26205345(+)$1	272	88	92	11.9999
:hhh	chr7:6513723-6513940(-)$1	217	19	23	11.9999
eeee	chr19:49408969-49409241(+)$1	272	28	32	11.9999
::::	chr19:18287847-18288097(+)$1	250	0	4	11.9999
JJJJ	chr16:74502743-74502988(-)$1	245	71	75	11.9999
dddd	chr19:14675660-14675881(+)$1	221	92	96	11.9999
ggee	chrX:153663384-153663630(+)$1	246	39	43	11.9999
dddd	chr15:45007727-45007940(+)$1	213	75	79	11.9999
ccll	chr15:44053525-44053735(+)$1	210	144	148	11.9999
''''	chr3:14499359-14499574(+)$1	215	40	44	11.9999
::::	chr1:165712429-165712648(-)$1	219	11	15	11.9999
b]==	chr17:28789287-28789588(+)$1	301	271	275	11.9999
{DDD	chr12:58089694-58089921(+)$1	227	9	13	11.9999
gggg	chr11:63520440-63520662(+)$1	222	198	202	11.9999
eea[	chr1:155987971-155988245(-)$1	274	190	194	11.9999
%%%h	chr15:89444681-89444895(-)$1	214	18	22	11.9999
bb]f	chr17:57888965-57889238(+)$1	273	55	59	11.9999
CCCC	chr11:130003495-130003723(+)$1	228	3	7	11.9999
dd44	chr15:79227217-79227450(-)$1	233	152	156	11.9999
::::	chr3:195789624-195789830(-)$1	206	11	15	11.9999
ff::	chr5:179143157-179143389(+)$1	232	224	228	11.9999
b22f	chrX:153662636-153662850(+)$1	214	54	58	11.9999
EEEE	chr12:58089644-58089858(+)$1	214	59	63	11.9999
EEEE	chr1:181059133-181059415(+)$1	282	14	18	11.9999
JJJJ	chr5:179135891-179136132(+)$1	241	73	77	11.9999
CCDD	chr12:56120852-56121084(-)$1	232	44	48	11.9999
tttt	chr1:160969945-160970215(-)$1	270	66	70	11.9999
GGGG	chr12:98993730-98993984(+)$1	254	22	26	11.9999
ffff	chrX:65393498-65393740(+)$1	242	124	128	11.9999

#DB
))))	chr4:145039777-145040006(-)$1	1	129	133	11.9999
)..)	chr19:41131752-41132006(+)$1	1	140	144	11.9999
((..	chr2:10924337-10924552(-)$1	1	21	25	11.9999
....	chr12:8085539-8085816(-)$1	1	126	130	11.9999
(((.	chr22:35799139-35799423(+)$1	1	12	16	11.9999
((((	chr11:1774634-1774898(-)$1	1	19	23	11.9999
((..	chr1:19948533-19948741(+)$1	1	50	54	11.9999
((((	chr7:100858269-100858501(-)$1	1	170	174	11.9999
))))	chr19:14675789-14676019(+)$1	1	79	83	11.9999
....	chr6:150070930-150071184(+)$1	1	35	39	11.9999
....	chr1:155981510-155981779(-)$1	1	106	110	11.9999
)...	chr19:14675913-14676127(+)$1	1	150	154	11.9999
....	chr17:1673133-1673390(+)$1	1	172	176	11.9999
((.(	chr11:118921658-118921922(-)$1	1	18	22	11.9999
...(	chr1:161479508-161479780(+)$1	1	34	38	11.9999
....	chr1:165712303-165712545(-)$1	1	35	39	11.9999
((..	chr4:99997754-99997978(-)$1	1	24	28	11.9999
))))	chr5:179146638-179146874(+)$1	1	216	220	11.9999
(.((	chr11:118922913-118923193(-)$1	1	43	47	11.9999
..))	chr1:165712345-165712629(-)$1	1	119	123	11.9999
))))	chr14:68159053-68159313(-)$1	1	235	239	11.9999
((((	chr5:133944003-133944294(-)$1	1	47	51	11.9999
((((	chr16:74503782-74504041(-)$1	1	55	59	11.9999
....	chr19:14675542-14675771(+)$1	1	110	114	11.9999
)...	chr7:56142177-56142430(+)$1	1	115	119	11.9999
))))	chr11:62652725-62652929(+)$1	1	199	203	11.9999
))))	chr12:46754762-46755092(-)$1	1	83	87	11.9999
....	chr3:195791124-195791341(-)$1	1	22	26	11.9999
((..	chr4:110972665-110972932(-)$1	1	93	97	11.9999
))))	chr1:120254509-120254845(+)$1	1	54	58	11.9999
....	chr6:30690601-30690843(+)$1	1	5	9	11.9999
))))	chr17:79805106-79805323(-)$1	1	84	88	11.9999
((((	chr1:43212279-43212588(-)$1	1	33	37	11.9999
).).	chr5:179149823-179150032(+)$1	1	88	92	11.9999
....	chr3:195794802-195795016(-)$1	1	209	213	11.9999
...(	chr17:26883744-26883982(-)$1	1	33	37	11.9999
((.(	chr11:118921722-118921960(-)$1	1	56	60	11.9999
))))	chr11:118920394-118920649(-)$1	1	152	156	11.9999
))).	chr3:33110214-33110489(-)$1	1	198	202	11.9999
((((	chr10:106027019-106027265(+)$1	1	99	103	11.9999
....	chr1:160969348-160969632(-)$1	1	224	228	11.9999
))))	chr11:62397752-62397975(-)$1	1	96	100	11.9999
....	chr12:56119237-56119499(-)$1	1	19	23	11.9999
))..	chr12:56120383-56120660(-)$1	1	74	78	11.9999
....	chr11:62402356-62402567(-)$1	1	1	5	11.9999
)).)	chr19:35657052-35657257(+)$1	1	73	77	11.9999
.)))	chr6:26205073-26205345(+)$1	1	88	92	11.9999
.(((	chr7:6513723-6513940(-)$1	1	19	23	11.9999
((((	chr19:49408969-49409241(+)$1	1	28	32	11.9999
....	chr19:18287847-18288097(+)$1	1	0	4	11.9999
))))	chr16:74502743-74502988(-)$1	1	71	75	11.9999
((((	chr19:14675660-14675881(+)$1	1	92	96	11.9999
))))	chrX:153663384-153663630(+)$1	1	39	43	11.9999
))))	chr15:45007727-45007940(+)$1	1	75	79	11.9999
((..	chr15:44053525-44053735(+)$1	1	144	148	11.9999
....	chr3:14499359-14499574(+)$1	1	40	44	11.9999
....	chr1:165712429-165712648(-)$1	1	11	15	11.9999
).))	chr17:28789287-28789588(+)$1	1	271	275	11.9999
.(((	chr12:58089694-58089921(+)$1	1	9	13	11.9999
))))	chr11:63520440-63520662(+)$1	1	198	202	11.9999
(((.	chr1:155987971-155988245(-)$1	1	190	194	11.9999
...(	chr15:89444681-89444895(-)$1	1	18	22	11.9999
)).)	chr17:57888965-57889238(+)$1	1	55	59	11.9999
((((	chr11:130003495-130003723(+)$1	1	3	7	11.9999
))..	chr15:79227217-79227450(-)$1	1	152	156	11.9999
....	chr3:195789624-195789830(-)$1	1	11	15	11.9999
))..	chr5:179143157-179143389(+)$1	1	224	228	11.9999
)..)	chrX:153662636-153662850(+)$1	1	54	58	11.9999
((((	chr12:58089644-58089858(+)$1	1	59	63	11.9999
((((	chr1:181059133-181059415(+)$1	1	14	18	11.9999
))))	chr5:179135891-179136132(+)$1	1	73	77	11.9999
((((	chr12:56120852-56121084(-)$1	1	44	48	11.9999
....	chr1:160969945-160970215(-)$1	1	66	70	11.9999
((((	chr12:98993730-98993984(+)$1	1	22	26	11.9999
((((	chrX:65393498-65393740(+)$1	1	124	128	11.9999

#PSSM
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	

#score	899.9999999999995
#seq	75
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_UTR_m3_run2.nuc.txt

#NT
GCGGCCGCAGGGCG	chr2:54197770-54198043(-)$1	273	19	33	18.0204
gcgggcgccgggcg	chr20:35491717-35491998(-)$1	281	2	16	18.2244
GCCGCCGCCUAGGG	chr7:77166503-77166748(+)$1	245	196	210	17.0000
GCCGCCCCCUGGCA	chr19:1881799-1882052(-)$1	253	152	166	18.0204
GCGGCCGACGGGCG	chr1:212458793-212459051(+)$1	258	19	33	17.7142
gcggccuccucccc	chrX:152954283-152954576(+)$1	293	27	41	14.3469
GCUUCCGCCUGGGC	chr20:31172321-31172553(-)$1	232	111	125	17.2040
GCCACCGCCUGUCC	chr11:2160059-2160333(-)$1	274	124	138	14.5510
gccgccgcccggcc	chr12:116714790-116715053(-)$1	263	39	53	19.9591
ACGGCCUCCGGGCC	chr19:1104622-1104880(+)$1	258	36	50	15.1632
GAGGCAGCCUGGCC	chr16:1428942-1429178(-)$1	236	133	147	17.3061
GCUGACACCUGGUC	chr11:611793-612058(+)$1	265	149	163	13.3265
gccgccgcugGGCA	chr9:126030503-126030863(-)$1	360	49	63	14.7551
GCGGCCGCCAUGUU	chr5:138629435-138629694(+)$1	259	225	239	14.7551
gcggcccgcgggcc	chr5:154136560-154136852(+)$1	292	18	32	16.5918
GCCCCGGCCUGGCA	chr19:1852839-1853083(-)$1	244	176	190	13.1224
GCCCGCGCCUGGGC	chr7:106809415-106809700(+)$1	285	182	196	14.3469
GCUGCCGCGUGGGC	chr7:1889383-1889623(-)$1	240	53	67	17.4081
GCGCCAGCCUcgcc	chr3:14989009-14989269(-)$1	260	195	209	14.0408
GCGCCCGCCGUGGU	chr2:97535532-97535817(-)$1	285	13	27	13.0204
GUGGCCGGCUGCGC	chr7:6522977-6523228(-)$1	251	65	79	12.2040
GCGGCCGCGUGAGG	chr17:7476586-7476837(+)$1	251	152	166	14.7551
GCGGCCUCCUUGUG	chr19:1418628-1418878(+)$1	250	119	133	15.4693
gcgggcggcgggcg	chr1:22263565-22263826(-)$1	261	124	138	14.3469
GCGGCCGCAUGGUG	chr3:128211675-128211981(+)$1	306	210	224	17.9183
GAGGCCACCUGGGC	chr19:50985396-50985651(+)$1	255	241	255	17.0000
GCCGUCGCCUAGGC	chr4:140098113-140098347(-)$1	234	5	19	13.8367
GCGGCUCCGUGGCG	chr5:176738850-176739091(-)$1	241	76	90	13.8367
GCUGCCCCCUCCCC	chr1:36787658-36787932(+)$1	274	50	64	12.3061
gcggccggcuggag	chr9:130331080-130331356(-)$1	276	7	21	18.0204
GCAGCCCCCGAGCC	chr5:154134902-154135257(+)$1	355	46	60	13.8367
GGGGCUGCGUGGCC	chr8:102217054-102217310(-)$1	256	10	24	13.6326
ggcgcccccuggcg	chr7:5569343-5569620(-)$1	277	235	249	15.3673
GCGGCCGCCAUGUU	chr5:138629494-138629738(+)$1	244	166	180	14.7551
GCCGCCGCCUGCGG	chr16:3767279-3767620(-)$1	341	145	159	16.7959
gcgggccccgggcc	chr22:20067968-20068234(+)$1	266	134	148	16.6938
GCUUCCACCUGGUG	chr17:75212399-75212674(+)$1	275	147	161	12.6122
GCGGCCGCGUGGAC	chr22:20004133-20004419(-)$1	286	169	183	19.2448
GCGCCAACCUGGAC	chr22:19712074-19712316(+)$1	242	0	14	12.9183
GCGGCCGCCUGGCC	chr12:109124505-109124766(-)$1	261	111	125	24.7551
GGGGCCGCCGGGGA	chr19:2270264-2270523(+)$1	259	239	253	15.9795
GUGGCUGCCUGCAC	chr17:75211637-75211875(+)$1	238	29	43	11.6938
GCUGCCACCCGGGU	chr19:2425978-2426265(-)$1	287	216	230	13.4285
GCGGCUCCCGGGCG	chr7:5569474-5569812(-)$1	338	178	192	15.7755
GUGGCCGCCCUGAC	chr17:7387947-7388219(+)$1	272	43	57	13.0204
GCGGGCGCCUGGCU	chr1:182360387-182360648(-)$1	261	245	259	18.9387
GCGGCCGGCGGGGG	chr17:62501964-62502237(-)$1	273	107	121	17.0000
GCGGCAGCCAGGCC	chr16:89787368-89787710(+)$1	342	192	206	18.3265

#otherMatches

#Struct PSSM
hhhhhh&&&&&&&c	chr19:55543601-55543909(+)$1	308	199	213	13.6326
[a&&&&&&&dddd!	chr2:54197770-54198043(-)$1	273	19	33	18.0204
::::::FFFFFF{B	chr20:35491717-35491998(-)$1	281	2	16	18.2244
JJJJJJJJJJCCCe	chr7:77166503-77166748(+)$1	245	196	210	17.0000
ccc22dddddddd:	chr19:1881799-1882052(-)$1	253	152	166	18.0204
hhhhhh!!eeeee[	chr1:212458793-212459051(+)$1	258	19	33	17.7142
FFFFFFBBDDDDFF	chrX:152954283-152954576(+)$1	293	27	41	14.3469
ddmmmmdddd]bb]	chr20:31172321-31172553(-)$1	232	111	125	17.2040
mmdddddddduuuu	chr11:2160059-2160333(-)$1	274	124	138	14.5510
{BBKKA{BBIIIII	chr12:116714790-116715053(-)$1	263	39	53	19.9591
####eeeee[cccf	chr19:1104622-1104880(+)$1	258	36	50	15.1632
a]ddddbb22bb:g	chr16:1428942-1429178(-)$1	236	133	147	17.3061
ee[cccnnnnnccc	chr11:611793-612058(+)$1	265	149	163	13.3265
IIIIII::a[ccco	chr9:126030503-126030863(-)$1	360	49	63	14.7551
fffffccc]dddd]	chr5:138629435-138629694(+)$1	259	225	239	14.7551
ffffffmmmmffff	chr5:154136560-154136852(+)$1	292	18	32	16.5918
cccpppppppccc]	chr19:1852839-1853083(-)$1	244	176	190	13.1224
eee22a]bb::::e	chr7:106809415-106809700(+)$1	285	182	196	14.3469
eeee::FFFFFFDD	chr7:1889383-1889623(-)$1	240	53	67	17.4081
gggg:::hhhhhhh	chr3:14989009-14989269(-)$1	260	195	209	14.0408
eeeeeaooooooa]	chr2:97535532-97535817(-)$1	285	13	27	13.0204
!!a[bb[hhhhhhh	chr7:6522977-6523228(-)$1	251	65	79	12.2040
iiiiiii:ccc[dd	chr17:7476586-7476837(+)$1	251	152	166	14.7551
peeeee]ffffff]	chr19:1418628-1418878(+)$1	250	119	133	15.4693
ggg[bbnnnnnbb]	chr1:22263565-22263826(-)$1	261	124	138	14.3469
BB}EEEEE}A}HHH	chr3:128211675-128211981(+)$1	306	210	224	17.9183
~~DDDD}EEEEE::	chr19:50985396-50985651(+)$1	255	241	255	17.0000
IIIII{CCCKKDDD	chr4:140098113-140098347(-)$1	234	5	19	13.8367
]dddd]ddddDDDD	chr5:176738850-176739091(-)$1	241	76	90	13.8367
EEEEEccc[eeeee	chr1:36787658-36787932(+)$1	274	50	64	12.3061
FFFFFFddddeeee	chr9:130331080-130331356(-)$1	276	7	21	18.0204
[a[ggggggg[ccc	chr5:154134902-154135257(+)$1	355	46	60	13.8367
hhhhhhmmmmhhhh	chr8:102217054-102217310(-)$1	256	10	24	13.6326
DDDCCCDDDDGGGG	chr7:5569343-5569620(-)$1	277	235	249	15.3673
ccagggggggcccp	chr5:138629494-138629738(+)$1	244	166	180	14.7551
dddd[=========	chr16:3767279-3767620(-)$1	341	145	159	16.7959
nnnnndddd]eeee	chr22:20067968-20068234(+)$1	266	134	148	16.6938
hhhccceeeeea]d	chr17:75212399-75212674(+)$1	275	147	161	12.6122
fffffbbeeeeeqq	chr22:20004133-20004419(-)$1	286	169	183	19.2448
FFFFFF::::FFFF	chr22:19712074-19712316(+)$1	242	0	14	12.9183
bb22ffffff]fff	chr12:109124505-109124766(-)$1	261	111	125	24.7551
JJJJJJJJEEEEE:	chr19:2270264-2270523(+)$1	259	239	253	15.9795
{AKKHHHHHHHH:c	chr17:75211637-75211875(+)$1	238	29	43	11.6938
DDDD:::ggggggg	chr19:2425978-2426265(-)$1	287	216	230	13.4285
EEEEEHHHHHHHH}	chr7:5569474-5569812(-)$1	338	178	192	15.7755
d]bbEEEEENNNNN	chr17:7387947-7388219(+)$1	272	43	57	13.0204
iiiiiiHHHHHHHH	chr1:182360387-182360648(-)$1	261	245	259	18.9387
==!!dddd[ggggg	chr17:62501964-62502237(-)$1	273	107	121	17.0000
c]ffffff::EEEE	chr16:89787368-89787710(+)$1	342	192	206	18.3265

#DB
((((((.......(	chr19:55543601-55543909(+)$1	1	199	213	13.6326
.(.......((((.	chr2:54197770-54198043(-)$1	1	19	33	18.0204
......((((((.(	chr20:35491717-35491998(-)$1	1	2	16	18.2244
)))))))))))))(	chr7:77166503-77166748(+)$1	1	196	210	17.0000
)))..)))))))).	chr19:1881799-1882052(-)$1	1	152	166	18.0204
((((((..(((((.	chr1:212458793-212459051(+)$1	1	19	33	17.7142
((((((((((((((	chrX:152954283-152954576(+)$1	1	27	41	14.3469
((....)))).)).	chr20:31172321-31172553(-)$1	1	111	125	17.2040
..))))((((....	chr11:2160059-2160333(-)$1	1	124	138	14.5510
.((..(.(((((((	chr12:116714790-116715053(-)$1	1	39	53	19.9591
....(((((.((((	chr19:1104622-1104880(+)$1	1	36	50	15.1632
).))))))..)).(	chr16:1428942-1429178(-)$1	1	133	147	17.3061
((.(((.....)))	chr11:611793-612058(+)$1	1	149	163	13.3265
((((((..(.(((.	chr9:126030503-126030863(-)$1	1	49	63	14.7551
)))))))).)))).	chr5:138629435-138629694(+)$1	1	225	239	14.7551
((((((....))))	chr5:154136560-154136852(+)$1	1	18	32	16.5918
(((.......))).	chr19:1852839-1853083(-)$1	1	176	190	13.1224
)))..).))....(	chr7:106809415-106809700(+)$1	1	182	196	14.3469
))))..((((((((	chr7:1889383-1889623(-)$1	1	53	67	17.4081
))))...(((((((	chr3:14989009-14989269(-)$1	1	195	209	14.0408
((((((......).	chr2:97535532-97535817(-)$1	1	13	27	13.0204
..(.((.(((((((	chr7:6522977-6523228(-)$1	1	65	79	12.2040
))))))).(((.((	chr17:7476586-7476837(+)$1	1	152	166	14.7551
.))))).)))))).	chr19:1418628-1418878(+)$1	1	119	133	15.4693
(((.((.....)).	chr1:22263565-22263826(-)$1	1	124	138	14.3469
)).))))).).)))	chr3:128211675-128211981(+)$1	1	210	224	17.9183
..)))).)))))..	chr19:50985396-50985651(+)$1	1	241	255	17.0000
(((((.(((..(((	chr4:140098113-140098347(-)$1	1	5	19	13.8367
.)))).))))))))	chr5:176738850-176739091(-)$1	1	76	90	13.8367
((((((((.(((((	chr1:36787658-36787932(+)$1	1	50	64	12.3061
((((((((((((((	chr9:130331080-130331356(-)$1	1	7	21	18.0204
.(.(((((((.(((	chr5:154134902-154135257(+)$1	1	46	60	13.8367
((((((....))))	chr8:102217054-102217310(-)$1	1	10	24	13.6326
))))))))))))))	chr7:5569343-5569620(-)$1	1	235	249	15.3673
(((((((((((((.	chr5:138629494-138629738(+)$1	1	166	180	14.7551
((((.(((((((((	chr16:3767279-3767620(-)$1	1	145	159	16.7959
.....)))).))))	chr22:20067968-20068234(+)$1	1	134	148	16.6938
)))))))))))).)	chr17:75212399-75212674(+)$1	1	147	161	12.6122
((((((((((((..	chr22:20004133-20004419(-)$1	1	169	183	19.2448
((((((....((((	chr22:19712074-19712316(+)$1	1	0	14	12.9183
))..)))))).)))	chr12:109124505-109124766(-)$1	1	111	125	24.7551
))))))))))))).	chr19:2270264-2270523(+)$1	1	239	253	15.9795
.(..((((((((.(	chr17:75211637-75211875(+)$1	1	29	43	11.6938
((((...(((((((	chr19:2425978-2426265(-)$1	1	216	230	13.4285
))))))))))))).	chr7:5569474-5569812(-)$1	1	178	192	15.7755
).))(((((.....	chr17:7387947-7388219(+)$1	1	43	57	13.0204
))))))))))))))	chr1:182360387-182360648(-)$1	1	245	259	18.9387
((..((((.(((((	chr17:62501964-62502237(-)$1	1	107	121	17.0000
).))))))..))))	chr16:89787368-89787710(+)$1	1	192	206	18.3265

#PSSM
G : 0.79	g : 0.18	A : 0.02	
C : 0.65	c : 0.16	A : 0.06	U : 0.06	G : 0.04	g : 0.02	
G : 0.51	C : 0.16	g : 0.12	U : 0.12	c : 0.06	A : 0.02	
G : 0.63	g : 0.18	C : 0.12	U : 0.04	A : 0.02	
C : 0.73	c : 0.12	g : 0.06	G : 0.04	A : 0.02	U : 0.02	
C : 0.63	c : 0.18	A : 0.08	U : 0.08	G : 0.02	
G : 0.57	g : 0.10	C : 0.10	A : 0.10	c : 0.06	U : 0.04	u : 0.02	
C : 0.75	c : 0.12	g : 0.06	G : 0.04	A : 0.02	
C : 0.67	c : 0.16	G : 0.10	A : 0.04	u : 0.02	
U : 0.55	G : 0.16	g : 0.10	u : 0.06	A : 0.06	C : 0.04	c : 0.02	
G : 0.63	g : 0.14	U : 0.10	A : 0.06	c : 0.04	C : 0.02	
G : 0.69	g : 0.16	C : 0.08	c : 0.02	U : 0.02	A : 0.02	
C : 0.32	G : 0.26	c : 0.16	U : 0.12	A : 0.10	a : 0.02	
C : 0.40	G : 0.22	c : 0.10	U : 0.10	g : 0.08	A : 0.08	

#score	766.9795918367354
#seq	49
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_UTR_m2_run2.nuc.txt

#NT
UUUGUGUUUU	chr5:137088274-137088556(-)$1	282	28	38	21.1224
UUUGUUUUUU	chr17:47128505-47128752(+)$1	247	14	24	25.1020
UUUGUUUUUU	chr19:1258684-1258928(+)$1	244	155	165	25.1020
UUUAUAUUUU	chr15:77242025-77242307(+)$1	282	91	101	19.4897
UUUAUAUUUU	chr5:38937946-38938234(-)$1	288	0	10	19.4897
UUUCuuuuuu	chr3:128338890-128339159(-)$1	269	84	94	22.3469
uuuauuuuuu	chr8:90945704-90945981(-)$1	277	14	24	23.2653
uuuuuuuuuu	chr19:18390666-18390885(-)$1	219	8	18	22.4489
UUUUUUUUUU	chr6:37142966-37143259(+)$1	293	189	199	22.4489
UUUGUUUUUU	chr4:109588793-109589044(+)$1	251	194	204	25.1020
UUUUUAUUUU	chr7:26231265-26231533(-)$1	268	86	96	18.6734
UUUGUUUUUU	chr7:100278803-100279081(-)$1	278	73	83	25.1020
UUUAUUUUUU	chr8:101734082-101734294(-)$1	212	135	145	23.2653
UUUGUUUUUU	chr8:101715439-101715686(-)$1	247	77	87	25.1020
UUUGUUUUUU	chr8:101715417-101715639(-)$1	222	30	40	25.1020
UUUGUCUUUU	chr14:56150920-56151169(+)$1	249	17	27	21.1224
UUUGGUUUUU	chr6:33377426-33377716(+)$1	290	203	213	21.0204
UUUGUUUUUG	chr15:77241869-77242152(+)$1	283	63	73	20.8163
UUUGUUUUUU	chr16:4307125-4307413(-)$1	288	216	226	25.1020
UUUAUUUUUU	chr7:5646097-5646351(+)$1	254	91	101	23.2653
UUUGCUUUUU	chr1:203823020-203823281(+)$1	261	87	97	20.9183
UUUCUAUUUU	chr11:47491703-47491931(-)$1	228	157	167	18.5714
UUUGUUUUUG	chr1:162569462-162569710(+)$1	248	14	24	20.8163
UUUGGUUUUU	chr16:2821252-2821486(+)$1	234	93	103	21.0204
UUUUUUUUUU	chr7:127231546-127231814(+)$1	268	89	99	22.4489
UUUGUUGUUU	chr1:32508369-32508613(+)$1	244	109	119	21.2244
UUUAUUUUUC	chr8:23429807-23430070(+)$1	263	10	20	18.9795
UUUGUUUCUU	chr6:16148229-16148465(+)$1	236	54	64	20.5102
UUUAUUUUUU	chr8:101734116-101734344(-)$1	228	185	195	23.2653
UUUAUUUUUU	chr8:101734057-101734282(-)$1	225	123	133	23.2653
UUUAUUUUUU	chr8:101734094-101734316(-)$1	222	157	167	23.2653
UUUGUUGUUU	chr1:32508413-32508627(+)$1	214	65	75	21.2244
uuucuuuuuu	chr2:68405914-68406198(-)$1	284	46	56	22.3469
UUUGUUUCUU	chr6:16148272-16148538(+)$1	266	11	21	20.5102
UUUGUUGUUU	chr10:74035222-74035599(+)$1	377	188	198	21.2244
UUUGGUUUUU	chr6:33377541-33377786(+)$1	245	88	98	21.0204
UUUAAUUUUU	chr14:70238190-70238477(+)$1	287	275	285	18.9795
UUUGCUUUUU	chr8:128753520-128753767(+)$1	247	77	87	20.9183
UUUGUUUUUA	chr1:78413984-78414248(-)$1	264	5	15	20.7142
UUUGUUCUUU	chr9:135973042-135973335(-)$1	293	245	255	20.8163
UUUGUUGUUU	chr1:32508427-32508681(+)$1	254	51	61	21.2244
UUUAUUUUUC	chr8:23429727-23430007(+)$1	280	90	100	18.9795
UUUGUGUUUU	chr4:83274927-83275217(-)$1	290	114	124	21.1224
UUUGUUUUUU	chr8:101715364-101715617(-)$1	253	8	18	25.1020
UGUGUUUUUU	chr5:126172502-126172792(+)$1	290	133	143	20.3061
UUUGUCUUUU	chr1:151376538-151376834(-)$1	296	280	290	21.1224
UUUAUUUUUU	chr19:10578460-10578707(+)$1	247	73	83	23.2653
UUAGUUUUUU	chr5:151184283-151184535(+)$1	252	61	71	20.3061

#otherMatches

#Struct PSSM
=####bb"""	chr6:17615407-17615629(-)$1	222	44	54	21.2244
::::::::::	chr5:137088274-137088556(-)$1	282	28	38	21.1224
:::::hhhhh	chr17:47128505-47128752(+)$1	247	14	24	25.1020
eeee####ii	chr19:1258684-1258928(+)$1	244	155	165	25.1020
===dddd!!d	chr15:77242025-77242307(+)$1	282	91	101	19.4897
::::::::::	chr5:38937946-38938234(-)$1	288	0	10	19.4897
==========	chr3:128338890-128339159(-)$1	269	84	94	22.3469
FFFF::::::	chr8:90945704-90945981(-)$1	277	14	24	23.2653
::========	chr19:18390666-18390885(-)$1	219	8	18	22.4489
qqq=======	chr6:37142966-37143259(+)$1	293	189	199	22.4489
))ddddqqqq	chr4:109588793-109589044(+)$1	251	194	204	25.1020
hhhhhh[ccc	chr7:26231265-26231533(-)$1	268	86	96	18.6734
eee!!eeeee	chr7:100278803-100279081(-)$1	278	73	83	25.1020
fffff^^^^^	chr8:101734082-101734294(-)$1	212	135	145	23.2653
gggggvvvvv	chr8:101715439-101715686(-)$1	247	77	87	25.1020
hhhhhvvvvv	chr8:101715417-101715639(-)$1	222	30	40	25.1020
:HHHHHHHH:	chr14:56150920-56151169(+)$1	249	17	27	21.1224
gggggg::::	chr6:33377426-33377716(+)$1	290	203	213	21.0204
gggggg####	chr15:77241869-77242152(+)$1	283	63	73	20.8163
::::::::::	chr16:4307125-4307413(-)$1	288	216	226	25.1020
b[ccc####b	chr7:5646097-5646351(+)$1	254	91	101	23.2653
::ffffff%%	chr1:203823020-203823281(+)$1	261	87	97	20.9183
$ffffffmmm	chr11:47491703-47491931(-)$1	228	157	167	18.5714
mmmffffff2	chr1:162569462-162569710(+)$1	248	14	24	20.8163
ggg"""ffff	chr16:2821252-2821486(+)$1	234	93	103	21.0204
==========	chr7:127231546-127231814(+)$1	268	89	99	22.4489
ggg####ddd	chr1:32508369-32508613(+)$1	244	109	119	21.2244
::::::::::	chr8:23429807-23430070(+)$1	263	10	20	18.9795
ssssssssss	chr6:16148229-16148465(+)$1	236	54	64	20.5102
::::::::::	chr8:101734116-101734344(-)$1	228	185	195	23.2653
444ggggggg	chr8:101734057-101734282(-)$1	225	123	133	23.2653
fffff^^^^^	chr8:101734094-101734316(-)$1	222	157	167	23.2653
ggg####ddd	chr1:32508413-32508627(+)$1	214	65	75	21.2244
dddd$$$$$d	chr2:68405914-68406198(-)$1	284	46	56	22.3469
KJJJJJJJJJ	chr6:16148272-16148538(+)$1	266	11	21	20.5102
JJJJJ:bb[g	chr10:74035222-74035599(+)$1	377	188	198	21.2244
gggggg::::	chr6:33377541-33377786(+)$1	245	88	98	21.0204
::::::::::	chr14:70238190-70238477(+)$1	287	275	285	18.9795
nneeeee22d	chr8:128753520-128753767(+)$1	247	77	87	20.9183
LLLDDDDLLL	chr1:78413984-78414248(-)$1	264	5	15	20.7142
ZZEEEEEYYE	chr9:135973042-135973335(-)$1	293	245	255	20.8163
ggg####ddd	chr1:32508427-32508681(+)$1	254	51	61	21.2244
hhhhhhhh::	chr8:23429727-23430007(+)$1	280	90	100	18.9795
ccc[ffffff	chr4:83274927-83275217(-)$1	290	114	124	21.1224
hhhhhvvvvv	chr8:101715364-101715617(-)$1	253	8	18	25.1020
ndddd]eeee	chr5:126172502-126172792(+)$1	290	133	143	20.3061
mmmmccc]cc	chr1:151376538-151376834(-)$1	296	280	290	21.1224
ddd[hhhhhh	chr19:10578460-10578707(+)$1	247	73	83	23.2653
iiiiii:eee	chr5:151184283-151184535(+)$1	252	61	71	20.3061

#DB
(....((...	chr6:17615407-17615629(-)$1	1	44	54	21.2244
..........	chr5:137088274-137088556(-)$1	1	28	38	21.1224
.....(((((	chr17:47128505-47128752(+)$1	1	14	24	25.1020
((((....((	chr19:1258684-1258928(+)$1	1	155	165	25.1020
)))((((..(	chr15:77242025-77242307(+)$1	1	91	101	19.4897
..........	chr5:38937946-38938234(-)$1	1	0	10	19.4897
((((((((((	chr3:128338890-128339159(-)$1	1	84	94	22.3469
((((......	chr8:90945704-90945981(-)$1	1	14	24	23.2653
..((((((((	chr19:18390666-18390885(-)$1	1	8	18	22.4489
...)))))))	chr6:37142966-37143259(+)$1	1	189	199	22.4489
..((((....	chr4:109588793-109589044(+)$1	1	194	204	25.1020
((((((.(((	chr7:26231265-26231533(-)$1	1	86	96	18.6734
(((..(((((	chr7:100278803-100279081(-)$1	1	73	83	25.1020
(((((.....	chr8:101734082-101734294(-)$1	1	135	145	23.2653
(((((.....	chr8:101715439-101715686(-)$1	1	77	87	25.1020
(((((.....	chr8:101715417-101715639(-)$1	1	30	40	25.1020
.((((((((.	chr14:56150920-56151169(+)$1	1	17	27	21.1224
))))))....	chr6:33377426-33377716(+)$1	1	203	213	21.0204
((((((....	chr15:77241869-77242152(+)$1	1	63	73	20.8163
..........	chr16:4307125-4307413(-)$1	1	216	226	25.1020
(.(((....(	chr7:5646097-5646351(+)$1	1	91	101	23.2653
..((((((..	chr1:203823020-203823281(+)$1	1	87	97	20.9183
.((((((...	chr11:47491703-47491931(-)$1	1	157	167	18.5714
...)))))).	chr1:162569462-162569710(+)$1	1	14	24	20.8163
(((...((((	chr16:2821252-2821486(+)$1	1	93	103	21.0204
((((((((((	chr7:127231546-127231814(+)$1	1	89	99	22.4489
(((....(((	chr1:32508369-32508613(+)$1	1	109	119	21.2244
..........	chr8:23429807-23430070(+)$1	1	10	20	18.9795
..........	chr6:16148229-16148465(+)$1	1	54	64	20.5102
..........	chr8:101734116-101734344(-)$1	1	185	195	23.2653
...)))))))	chr8:101734057-101734282(-)$1	1	123	133	23.2653
(((((.....	chr8:101734094-101734316(-)$1	1	157	167	23.2653
(((....(((	chr1:32508413-32508627(+)$1	1	65	75	21.2244
((((.....(	chr2:68405914-68406198(-)$1	1	46	56	22.3469
.(((((((((	chr6:16148272-16148538(+)$1	1	11	21	20.5102
(((((.((.(	chr10:74035222-74035599(+)$1	1	188	198	21.2244
))))))....	chr6:33377541-33377786(+)$1	1	88	98	21.0204
..........	chr14:70238190-70238477(+)$1	1	275	285	18.9795
..)))))..)	chr8:128753520-128753767(+)$1	1	77	87	20.9183
...((((...	chr1:78413984-78414248(-)$1	1	5	15	20.7142
..)))))..)	chr9:135973042-135973335(-)$1	1	245	255	20.8163
(((....(((	chr1:32508427-32508681(+)$1	1	51	61	21.2244
))))))))..	chr8:23429727-23430007(+)$1	1	90	100	18.9795
(((.((((((	chr4:83274927-83275217(-)$1	1	114	124	21.1224
(((((.....	chr8:101715364-101715617(-)$1	1	8	18	25.1020
.)))).))))	chr5:126172502-126172792(+)$1	1	133	143	20.3061
....))).))	chr1:151376538-151376834(-)$1	1	280	290	21.1224
(((.((((((	chr19:10578460-10578707(+)$1	1	73	83	23.2653
)))))).(((	chr5:151184283-151184535(+)$1	1	61	71	20.3061

#PSSM
U : 0.93	u : 0.06	
U : 0.91	u : 0.06	G : 0.02	
U : 0.91	u : 0.06	A : 0.02	
G : 0.61	A : 0.22	U : 0.06	C : 0.04	a : 0.02	u : 0.02	c : 0.02	
U : 0.79	u : 0.08	G : 0.06	C : 0.04	A : 0.02	
U : 0.75	A : 0.08	u : 0.08	G : 0.04	C : 0.04	
U : 0.79	G : 0.10	u : 0.08	C : 0.02	
U : 0.87	u : 0.08	C : 0.04	
U : 0.91	u : 0.08	
U : 0.81	u : 0.08	G : 0.04	C : 0.04	A : 0.02	

#score	1069.1836734693886
#seq	49
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_UTR_m2_run2.nuc.txt

#NT
GCC	chrX:153592530-153592755(-)$1	225	29	32	9.0000
GCC	chr3:127334655-127334894(+)$1	239	55	58	9.0000
gcc	chr6:168227704-168227984(+)$1	280	5	8	9.0000
GCC	chr21:38573979-38574250(+)$1	271	84	87	9.0000
GCC	chr17:7387874-7388126(+)$1	252	49	52	9.0000
GCC	chr3:184039486-184039721(+)$1	235	15	18	9.0000
GCC	chr11:4148304-4148557(+)$1	253	59	62	9.0000
GCC	chrX:153590575-153590800(-)$1	225	170	173	9.0000
GCC	chr7:2402183-2402439(+)$1	256	48	51	9.0000
GCC	chr1:220219683-220219906(-)$1	223	137	140	9.0000
GCC	chr14:102553248-102553481(-)$1	233	45	48	9.0000
GCC	chr19:14551881-14552163(+)$1	282	78	81	9.0000
GCC	chr5:151151400-151151701(+)$1	301	12	15	9.0000
gcc	chr16:23847386-23847701(+)$1	315	73	76	9.0000
GCC	chr2:73461338-73461587(+)$1	249	147	150	9.0000
GCC	chr3:184040778-184041002(+)$1	224	22	25	9.0000
GCC	chr1:156280761-156281056(-)$1	295	11	14	9.0000
gcc	chr2:225449612-225449884(-)$1	272	0	3	9.0000
GCC	chr16:2821766-2822049(-)$1	283	13	16	9.0000
GCC	chr11:70116734-70117037(+)$1	303	244	247	9.0000
GCC	chr19:59056323-59056562(+)$1	239	12	15	9.0000
GCC	chr1:186344003-186344312(-)$1	309	0	3	9.0000
GCC	chr16:23847228-23847494(+)$1	266	19	22	9.0000
GCC	chr15:30114104-30114418(-)$1	314	45	48	9.0000
GCC	chr3:41240891-41241198(+)$1	307	1	4	9.0000
GCC	chr2:96940509-96940776(-)$1	267	64	67	9.0000
GCC	chr17:1587994-1588253(-)$1	259	58	61	9.0000
GCC	chrX:153582712-153582948(-)$1	236	18	21	9.0000
GCC	chr20:30327152-30327453(+)$1	301	2	5	9.0000
GCC	chr3:47887658-47887904(+)$1	246	20	23	9.0000
GCC	chr9:139733799-139734037(+)$1	238	9	12	9.0000
GCC	chr17:45727705-45727910(+)$1	205	160	163	9.0000
GCC	chr1:154574788-154575067(-)$1	279	36	39	9.0000
GCC	chr1:156100407-156100665(+)$1	258	79	82	9.0000
GCC	chr17:1587973-1588194(-)$1	221	71	74	9.0000
GCC	chr5:138260179-138260431(+)$1	252	164	167	9.0000
GCC	chr8:48872532-48872814(-)$1	282	0	3	9.0000
GCC	chr9:134351309-134351583(+)$1	274	177	180	9.0000
gcc	chr19:59055944-59056207(+)$1	263	134	137	9.0000
GCC	chr19:8550498-8550793(+)$1	295	42	45	9.0000
GCC	chr11:122929398-122929638(-)$1	240	118	121	9.0000
GCC	chr11:65819748-65819985(+)$1	237	29	32	9.0000
GCC	chr11:61077240-61077488(-)$1	248	64	67	9.0000
GCC	chr19:19638904-19639173(+)$1	269	1	4	9.0000
GCC	chr5:154173591-154173829(+)$1	238	67	70	9.0000
GCC	chr7:30671820-30672070(+)$1	250	47	50	9.0000
GCC	chr11:62368860-62369131(-)$1	271	39	42	9.0000
GCC	chr20:418979-419225(-)$1	246	112	115	9.0000
GCC	chr3:184045118-184045333(+)$1	215	56	59	9.0000
GCC	chr5:138260940-138261181(+)$1	241	8	11	9.0000
GCC	chr2:96874188-96874550(-)$1	362	25	28	9.0000
GCC	chr7:2402607-2402860(+)$1	253	21	24	9.0000
GCC	chr12:46384034-46384339(-)$1	305	38	41	9.0000
GCC	chr19:39669945-39670205(+)$1	260	4	7	9.0000
GCC	chr9:134351394-134351624(+)$1	230	92	95	9.0000
GCC	chr1:214776480-214776742(+)$1	262	120	123	9.0000
GCC	chrX:153587639-153587870(-)$1	231	27	30	9.0000
GCC	chr1:156104896-156105161(+)$1	265	12	15	9.0000
GCC	chr8:48686794-48687019(-)$1	225	109	112	9.0000
GCC	chr7:156931687-156931997(+)$1	310	3	6	9.0000
GCC	chrX:153592923-153593139(-)$1	216	68	71	9.0000
GCC	chr9:134351204-134351447(+)$1	243	30	33	9.0000
GCC	chr9:134351141-134351388(+)$1	247	93	96	9.0000
GCC	chr22:19711730-19712033(+)$1	303	111	114	9.0000
GCC	chr16:28855234-28855477(-)$1	243	16	19	9.0000
GCC	chr3:184040918-184041129(+)$1	211	33	36	9.0000
GCC	chrX:153586547-153586778(-)$1	231	54	57	9.0000
GCC	chr3:47887925-47888197(+)$1	272	72	75	9.0000
GCC	chr1:226595507-226595796(-)$1	289	27	30	9.0000
GCC	chr20:56100013-56100302(-)$1	289	9	12	9.0000
gcc	chr15:64752851-64753141(+)$1	290	37	40	9.0000
GCC	chr5:139781407-139781651(+)$1	244	214	217	9.0000
GCC	chrX:153588368-153588594(-)$1	226	44	47	9.0000
GCC	chr2:111435454-111435739(-)$1	285	251	254	9.0000
GCC	chr16:84778741-84778985(+)$1	244	14	17	9.0000
GCC	chr1:245027497-245027759(-)$1	262	35	38	9.0000
GCC	chrX:153588099-153588323(-)$1	224	20	23	9.0000
GCC	chr3:184046596-184046827(+)$1	231	112	115	9.0000
GCC	chrX:153583268-153583498(-)$1	230	70	73	9.0000
GCC	chr8:48873979-48874324(+)$1	345	19	22	9.0000
GCC	chr1:160312879-160313140(-)$1	261	45	48	9.0000
GCC	chr19:46857058-46857342(+)$1	284	8	11	9.0000
GCC	chr4:122744779-122745034(-)$1	255	34	37	9.0000
gcc	chr7:105162447-105162792(-)$1	345	22	25	9.0000
GCC	chrX:153587254-153587466(-)$1	212	16	19	9.0000
gcc	chr14:102430807-102431065(+)$1	258	33	36	9.0000
GCC	chr11:14521196-14521451(-)$1	255	54	57	9.0000
GCC	chr9:95055841-95056072(-)$1	231	32	35	9.0000
GCC	chr6:31750019-31750278(-)$1	259	27	30	9.0000
GCC	chr5:71403198-71403503(+)$1	305	35	38	9.0000
GCC	chr9:139734867-139735142(+)$1	275	26	29	9.0000
GCC	chr5:132387636-132387889(+)$1	253	80	83	9.0000
GCC	chr3:184043272-184043528(+)$1	256	6	9	9.0000
GCC	chr17:1553987-1554230(-)$1	243	56	59	9.0000
GCC	chr6:31760675-31760933(-)$1	258	31	34	9.0000
GCC	chr3:184041092-184041334(+)$1	242	2	5	9.0000
GCC	chr7:74072131-74072445(+)$1	314	0	3	9.0000

#otherMatches

#Struct PSSM
FFF	chr5:132387726-132387981(+)$1	255	5	8	9.0000
eee	chrX:153592530-153592755(-)$1	225	29	32	9.0000
ddd	chr3:127334655-127334894(+)$1	239	55	58	9.0000
CCE	chr6:168227704-168227984(+)$1	280	5	8	9.0000
ddd	chr21:38573979-38574250(+)$1	271	84	87	9.0000
ccc	chr17:7387874-7388126(+)$1	252	49	52	9.0000
bbc	chr3:184039486-184039721(+)$1	235	15	18	9.0000
DDD	chr11:4148304-4148557(+)$1	253	59	62	9.0000
ff:	chrX:153590575-153590800(-)$1	225	170	173	9.0000
==b	chr7:2402183-2402439(+)$1	256	48	51	9.0000
fff	chr1:220219683-220219906(-)$1	223	137	140	9.0000
]bb	chr14:102553248-102553481(-)$1	233	45	48	9.0000
b::	chr19:14551881-14552163(+)$1	282	78	81	9.0000
dde	chr5:151151400-151151701(+)$1	301	12	15	9.0000
fff	chr16:23847386-23847701(+)$1	315	73	76	9.0000
HHH	chr2:73461338-73461587(+)$1	249	147	150	9.0000
[am	chr3:184040778-184041002(+)$1	224	22	25	9.0000
FF:	chr1:156280761-156281056(-)$1	295	11	14	9.0000
ccc	chr2:225449612-225449884(-)$1	272	0	3	9.0000
DDD	chr16:2821766-2822049(-)$1	283	13	16	9.0000
ddd	chr11:70116734-70117037(+)$1	303	244	247	9.0000
dd[	chr19:59056323-59056562(+)$1	239	12	15	9.0000
EEE	chr1:186344003-186344312(-)$1	309	0	3	9.0000
ppp	chr16:23847228-23847494(+)$1	266	19	22	9.0000
CYY	chr15:30114104-30114418(-)$1	314	45	48	9.0000
CCC	chr3:41240891-41241198(+)$1	307	1	4	9.0000
DDK	chr2:96940509-96940776(-)$1	267	64	67	9.0000
{FF	chr17:1587994-1588253(-)$1	259	58	61	9.0000
dd]	chrX:153582712-153582948(-)$1	236	18	21	9.0000
DDD	chr20:30327152-30327453(+)$1	301	2	5	9.0000
ooo	chr3:47887658-47887904(+)$1	246	20	23	9.0000
FFF	chr9:139733799-139734037(+)$1	238	9	12	9.0000
bbo	chr17:45727705-45727910(+)$1	205	160	163	9.0000
hhh	chr1:154574788-154575067(-)$1	279	36	39	9.0000
eee	chr1:156100407-156100665(+)$1	258	79	82	9.0000
===	chr17:1587973-1588194(-)$1	221	71	74	9.0000
eee	chr5:138260179-138260431(+)$1	252	164	167	9.0000
:DD	chr8:48872532-48872814(-)$1	282	0	3	9.0000
III	chr9:134351309-134351583(+)$1	274	177	180	9.0000
eee	chr19:59055944-59056207(+)$1	263	134	137	9.0000
ccc	chr19:8550498-8550793(+)$1	295	42	45	9.0000
eee	chr11:122929398-122929638(-)$1	240	118	121	9.0000
Ecc	chr11:65819748-65819985(+)$1	237	29	32	9.0000
fff	chr11:61077240-61077488(-)$1	248	64	67	9.0000
:::	chr19:19638904-19639173(+)$1	269	1	4	9.0000
!!e	chr5:154173591-154173829(+)$1	238	67	70	9.0000
:::	chr7:30671820-30672070(+)$1	250	47	50	9.0000
[dd	chr11:62368860-62369131(-)$1	271	39	42	9.0000
CCC	chr20:418979-419225(-)$1	246	112	115	9.0000
"cc	chr3:184045118-184045333(+)$1	215	56	59	9.0000
DDD	chr5:138260940-138261181(+)$1	241	8	11	9.0000
DDD	chr2:96874188-96874550(-)$1	362	25	28	9.0000
ccc	chr7:2402607-2402860(+)$1	253	21	24	9.0000
EEE	chr12:46384034-46384339(-)$1	305	38	41	9.0000
ddd	chr19:39669945-39670205(+)$1	260	4	7	9.0000
cc2	chr9:134351394-134351624(+)$1	230	92	95	9.0000
KBB	chr1:214776480-214776742(+)$1	262	120	123	9.0000
CCC	chrX:153587639-153587870(-)$1	231	27	30	9.0000
qqq	chr1:156104896-156105161(+)$1	265	12	15	9.0000
ffm	chr8:48686794-48687019(-)$1	225	109	112	9.0000
:::	chr7:156931687-156931997(+)$1	310	3	6	9.0000
bbi	chrX:153592923-153593139(-)$1	216	68	71	9.0000
qqc	chr9:134351204-134351447(+)$1	243	30	33	9.0000
dd]	chr9:134351141-134351388(+)$1	247	93	96	9.0000
ddd	chr22:19711730-19712033(+)$1	303	111	114	9.0000
FFF	chr16:28855234-28855477(-)$1	243	16	19	9.0000
ggg	chr3:184040918-184041129(+)$1	211	33	36	9.0000
dd[	chrX:153586547-153586778(-)$1	231	54	57	9.0000
D::	chr3:47887925-47888197(+)$1	272	72	75	9.0000
GGG	chr1:226595507-226595796(-)$1	289	27	30	9.0000
:BB	chr20:56100013-56100302(-)$1	289	9	12	9.0000
ccc	chr15:64752851-64753141(+)$1	290	37	40	9.0000
ttt	chr5:139781407-139781651(+)$1	244	214	217	9.0000
cc[	chrX:153588368-153588594(-)$1	226	44	47	9.0000
eel	chr2:111435454-111435739(-)$1	285	251	254	9.0000
22e	chr16:84778741-84778985(+)$1	244	14	17	9.0000
bb]	chr1:245027497-245027759(-)$1	262	35	38	9.0000
:::	chrX:153588099-153588323(-)$1	224	20	23	9.0000
:EE	chr3:184046596-184046827(+)$1	231	112	115	9.0000
[bb	chrX:153583268-153583498(-)$1	230	70	73	9.0000
CCC	chr8:48873979-48874324(+)$1	345	19	22	9.0000
DDD	chr1:160312879-160313140(-)$1	261	45	48	9.0000
fff	chr19:46857058-46857342(+)$1	284	8	11	9.0000
ecc	chr4:122744779-122745034(-)$1	255	34	37	9.0000
FF{	chr7:105162447-105162792(-)$1	345	22	25	9.0000
{CC	chrX:153587254-153587466(-)$1	212	16	19	9.0000
DDD	chr14:102430807-102431065(+)$1	258	33	36	9.0000
KCC	chr11:14521196-14521451(-)$1	255	54	57	9.0000
cff	chr9:95055841-95056072(-)$1	231	32	35	9.0000
FFF	chr6:31750019-31750278(-)$1	259	27	30	9.0000
eee	chr5:71403198-71403503(+)$1	305	35	38	9.0000
FFF	chr9:139734867-139735142(+)$1	275	26	29	9.0000
ddd	chr5:132387636-132387889(+)$1	253	80	83	9.0000
DDb	chr3:184043272-184043528(+)$1	256	6	9	9.0000
bbd	chr17:1553987-1554230(-)$1	243	56	59	9.0000
Dee	chr6:31760675-31760933(-)$1	258	31	34	9.0000
DDD	chr3:184041092-184041334(+)$1	242	2	5	9.0000
BB{	chr7:74072131-74072445(+)$1	314	0	3	9.0000

#DB
(((	chr5:132387726-132387981(+)$1	1	5	8	9.0000
(((	chrX:153592530-153592755(-)$1	1	29	32	9.0000
(((	chr3:127334655-127334894(+)$1	1	55	58	9.0000
(((	chr6:168227704-168227984(+)$1	1	5	8	9.0000
(((	chr21:38573979-38574250(+)$1	1	84	87	9.0000
)))	chr17:7387874-7388126(+)$1	1	49	52	9.0000
(((	chr3:184039486-184039721(+)$1	1	15	18	9.0000
(((	chr11:4148304-4148557(+)$1	1	59	62	9.0000
)).	chrX:153590575-153590800(-)$1	1	170	173	9.0000
(((	chr7:2402183-2402439(+)$1	1	48	51	9.0000
)))	chr1:220219683-220219906(-)$1	1	137	140	9.0000
.))	chr14:102553248-102553481(-)$1	1	45	48	9.0000
)..	chr19:14551881-14552163(+)$1	1	78	81	9.0000
))(	chr5:151151400-151151701(+)$1	1	12	15	9.0000
(((	chr16:23847386-23847701(+)$1	1	73	76	9.0000
)))	chr2:73461338-73461587(+)$1	1	147	150	9.0000
.(.	chr3:184040778-184041002(+)$1	1	22	25	9.0000
((.	chr1:156280761-156281056(-)$1	1	11	14	9.0000
(((	chr2:225449612-225449884(-)$1	1	0	3	9.0000
(((	chr16:2821766-2822049(-)$1	1	13	16	9.0000
)))	chr11:70116734-70117037(+)$1	1	244	247	9.0000
((.	chr19:59056323-59056562(+)$1	1	12	15	9.0000
(((	chr1:186344003-186344312(-)$1	1	0	3	9.0000
...	chr16:23847228-23847494(+)$1	1	19	22	9.0000
)..	chr15:30114104-30114418(-)$1	1	45	48	9.0000
(((	chr3:41240891-41241198(+)$1	1	1	4	9.0000
((.	chr2:96940509-96940776(-)$1	1	64	67	9.0000
.((	chr17:1587994-1588253(-)$1	1	58	61	9.0000
)).	chrX:153582712-153582948(-)$1	1	18	21	9.0000
(((	chr20:30327152-30327453(+)$1	1	2	5	9.0000
...	chr3:47887658-47887904(+)$1	1	20	23	9.0000
(((	chr9:139733799-139734037(+)$1	1	9	12	9.0000
((.	chr17:45727705-45727910(+)$1	1	160	163	9.0000
)))	chr1:154574788-154575067(-)$1	1	36	39	9.0000
)))	chr1:156100407-156100665(+)$1	1	79	82	9.0000
(((	chr17:1587973-1588194(-)$1	1	71	74	9.0000
(((	chr5:138260179-138260431(+)$1	1	164	167	9.0000
.((	chr8:48872532-48872814(-)$1	1	0	3	9.0000
(((	chr9:134351309-134351583(+)$1	1	177	180	9.0000
)))	chr19:59055944-59056207(+)$1	1	134	137	9.0000
)))	chr19:8550498-8550793(+)$1	1	42	45	9.0000
(((	chr11:122929398-122929638(-)$1	1	118	121	9.0000
(((	chr11:65819748-65819985(+)$1	1	29	32	9.0000
(((	chr11:61077240-61077488(-)$1	1	64	67	9.0000
...	chr19:19638904-19639173(+)$1	1	1	4	9.0000
..(	chr5:154173591-154173829(+)$1	1	67	70	9.0000
...	chr7:30671820-30672070(+)$1	1	47	50	9.0000
.((	chr11:62368860-62369131(-)$1	1	39	42	9.0000
(((	chr20:418979-419225(-)$1	1	112	115	9.0000
.((	chr3:184045118-184045333(+)$1	1	56	59	9.0000
(((	chr5:138260940-138261181(+)$1	1	8	11	9.0000
(((	chr2:96874188-96874550(-)$1	1	25	28	9.0000
)))	chr7:2402607-2402860(+)$1	1	21	24	9.0000
(((	chr12:46384034-46384339(-)$1	1	38	41	9.0000
(((	chr19:39669945-39670205(+)$1	1	4	7	9.0000
)).	chr9:134351394-134351624(+)$1	1	92	95	9.0000
.((	chr1:214776480-214776742(+)$1	1	120	123	9.0000
(((	chrX:153587639-153587870(-)$1	1	27	30	9.0000
...	chr1:156104896-156105161(+)$1	1	12	15	9.0000
((.	chr8:48686794-48687019(-)$1	1	109	112	9.0000
...	chr7:156931687-156931997(+)$1	1	3	6	9.0000
(((	chrX:153592923-153593139(-)$1	1	68	71	9.0000
..)	chr9:134351204-134351447(+)$1	1	30	33	9.0000
)).	chr9:134351141-134351388(+)$1	1	93	96	9.0000
(((	chr22:19711730-19712033(+)$1	1	111	114	9.0000
(((	chr16:28855234-28855477(-)$1	1	16	19	9.0000
(((	chr3:184040918-184041129(+)$1	1	33	36	9.0000
((.	chrX:153586547-153586778(-)$1	1	54	57	9.0000
)..	chr3:47887925-47888197(+)$1	1	72	75	9.0000
(((	chr1:226595507-226595796(-)$1	1	27	30	9.0000
.((	chr20:56100013-56100302(-)$1	1	9	12	9.0000
)))	chr15:64752851-64753141(+)$1	1	37	40	9.0000
...	chr5:139781407-139781651(+)$1	1	214	217	9.0000
((.	chrX:153588368-153588594(-)$1	1	44	47	9.0000
((.	chr2:111435454-111435739(-)$1	1	251	254	9.0000
..)	chr16:84778741-84778985(+)$1	1	14	17	9.0000
)).	chr1:245027497-245027759(-)$1	1	35	38	9.0000
...	chrX:153588099-153588323(-)$1	1	20	23	9.0000
.))	chr3:184046596-184046827(+)$1	1	112	115	9.0000
.((	chrX:153583268-153583498(-)$1	1	70	73	9.0000
(((	chr8:48873979-48874324(+)$1	1	19	22	9.0000
(((	chr1:160312879-160313140(-)$1	1	45	48	9.0000
(((	chr19:46857058-46857342(+)$1	1	8	11	9.0000
)((	chr4:122744779-122745034(-)$1	1	34	37	9.0000
((.	chr7:105162447-105162792(-)$1	1	22	25	9.0000
.((	chrX:153587254-153587466(-)$1	1	16	19	9.0000
(((	chr14:102430807-102431065(+)$1	1	33	36	9.0000
.((	chr11:14521196-14521451(-)$1	1	54	57	9.0000
(((	chr9:95055841-95056072(-)$1	1	32	35	9.0000
(((	chr6:31750019-31750278(-)$1	1	27	30	9.0000
)))	chr5:71403198-71403503(+)$1	1	35	38	9.0000
(((	chr9:139734867-139735142(+)$1	1	26	29	9.0000
(((	chr5:132387636-132387889(+)$1	1	80	83	9.0000
(((	chr3:184043272-184043528(+)$1	1	6	9	9.0000
)))	chr17:1553987-1554230(-)$1	1	56	59	9.0000
(((	chr6:31760675-31760933(-)$1	1	31	34	9.0000
(((	chr3:184041092-184041334(+)$1	1	2	5	9.0000
((.	chr7:74072131-74072445(+)$1	1	0	3	9.0000

#PSSM
G : 0.92	g : 0.07	
C : 0.92	c : 0.07	
C : 0.92	c : 0.07	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_UTR_m2_run1.nuc.txt

#NT
ugucacucaggcuggagugcagugacaugaucucagcucacugcaaccuccgcuuccuggguucaagcaauucucaugccucagccuccuga	chr3:196557672-196557926(+)$1	254	120	212	186.2941
uuuugcccagucuggagugcaguggcaugaucucagcucacugcaaccuccacccacuggguucaagcgauucuucugccucagccucccga	chr10:72637484-72637739(+)$1	255	122	214	190.5588
uguuacccaggcuggcgugcaguggugugaucucugcucacugcagccuccaccucccagguucaagugauucuccugucucagccucccga	chr10:69828134-69828346(-)$1	212	120	212	191.4411
uguugcccaggcuggagugcaguggcacacucuccgcucacugcaagcuccgccucccagguucaugcgauucuccugccucagccucucga	chr12:133349016-133349232(-)$1	216	120	212	190.9999
cagguuggaguguggagugcaguggcgcgaucugggcucacugcaaccuccaccucccagguucaagcgauucuccugccucaaccugccaa	chr1:21101332-21101587(-)$1	255	128	220	165.8529
ugucacccaggcuggaacgcacuggugugaucacggcucacugcagccuugaccucccuggcucaagcaauccucccagcucagccuccuga	chr16:1830644-1830906(+)$1	262	124	216	151.1470
ugucgccagucuggagugcuaguggcgcgaucuuggcuuacugcagccuccacuucccaaguucaagcgauucuccugccucagccucccga	chr7:48003353-48003605(-)$1	252	120	212	140.9999
cugucgccuggcuggagugcaguggcgugaucucagcucacugcaaccuccgcuuccuggguucaagcaauucuccucccucagucuccuga	chr11:61133853-61134110(+)$1	257	121	213	181.4411
uguugcccaggcuggagugcaguggcacacucuccgcucacugcaagcuccgccucccagguucaugcgauucuccugccucagccucucga	chr12:133348981-133349216(-)$1	235	104	196	190.9999
ugucgcccuggcuggggugcaguggugcgauuuuggcuaacugcaaccuccgccucccagguucaagcgauucuccugucucauccuucaga	chr19:5909405-5909619(+)$1	214	120	212	177.0294
ugucucccaggcuggagugcaguggcgcgaucucggcucacugugaccuccgccuccuggguucaagcaauucuccuuccucagccuccuga	chrX:122736716-122736966(-)$1	250	126	218	191.4411
ugucacucaggcuggagugcggugguauaaucucagcucacugcaaucucugccuaccagguucaagcgauucucgugccucagccucucga	chr16:23477142-23477368(-)$1	226	124	216	176.2941
uguugcccaggcuggagugcaauagcacgaucuuggcucaccgcaaccucugccuaccggguucaagugauucuugugccucagccuccuga	chr4:175239118-175239364(+)$1	246	131	223	179.5294
uguugcccagaauggagugcagugacaccaucuuggcucgcugcaaacucuuccuccuggguucaagugauucuugugccucagccucccgg	chr20:43560099-43560339(+)$1	240	71	163	163.9411
cuguugccagguuggagugcaguggugugaucucggcucacugcaaccccugccuccccgguucaagggauucuccugccucagccuccuga	chr9:94056682-94056936(-)$1	254	124	216	180.5588
cugucgccaggcuggagugcguuggcacaaucucggcucacugcaaccuccgccuccuggguucaaucgauucuccugccucagccuccuga	chr4:38945602-38945825(+)$1	223	122	214	185.5588
uguugccuaggcuggaguggaauggcgugauuucggcucacugcaaccucugccucccagguucaagugauucuccugccucagccucccga	chr5:179265531-179265777(-)$1	246	119	211	192.0294
cuuugcccaggcuggagugugguggcucgaucucagcuuacugcaaccuccgccuuccagguucaggcaauucuccugccucagccucccga	chr19:8467452-8467687(+)$1	235	129	221	187.0294
ugucccucaggcuagaauguguuggcgugaucuccacucacugcaaccuccaccuccuagguucaagugauucuagugccucagccucccaa	chr17:66418716-66418975(-)$1	259	123	215	164.5294
ugucgcccuggcuggggugcaguggugcgauuuuggcuaacugcaaccuccgccucccagguucaagcgauucuccugucucauccuucaga	chr19:5909419-5909658(+)$1	239	106	198	177.0294
ucuugcccaggcuggagugcaguggcacgaucuuggcucacugcaaccuccaucuccuggguugaagugauucugccucagccucccaagua	chr7:44102784-44103063(+)$1	279	134	226	143.3529
gccugggcuggauggagugcaguggcguaaucucagcucacuacaaccuccaccaccuggguucaggcaauucuccugccucagccucccaa	chr22:41324116-41324375(+)$1	259	129	221	165.9999
cugucuccaggcuggagugcaguggcaugaucuuggcucacugcaaccuccacuuuccagguucaagcaguucuccugccucaaccucccga	chr14:21928598-21928850(-)$1	252	124	216	179.0882
uguugcccaggcugcagugcaauggcgcgaucucggcucaccacaaccucugccuccuggguucaagcaauucuccugccucagccuccuga	chr6:158438354-158438601(+)$1	247	127	219	189.8235
uguuacccaggcuggcgugcaguggugugaucucugcucacugcagccuccaccucccagguucaagugauucuccugucucagccucccga	chr10:69828093-69828334(-)$1	241	108	200	191.4411
cucuggccuggcugaagugcaguggcgugaucagagcucacugcagccucgaacuccugggcucaagugauccucgcuccucagacugcuaa	chr14:21733064-21733276(-)$1	212	118	210	138.2058
uguugcccaggcuugagugcaguggcgcgaucucagcucacugcaaccuccgccucccagguucacgcaauucuccugccucggccucccga	chr12:123741917-123742176(-)$1	259	131	223	197.6176
uguugcccaggcuggagugcaaugguguggucucagcucacugcaaccuccgccucuuggguucaagugauucuccuaccucagccuccuga	chr15:44089500-44089750(+)$1	250	125	217	188.7941
cuuugcccaggcuggagugugguggcucgaucucagcuuacugcaaccuccgccuuccagguucaggcaauucuccugccucagccucccga	chr19:8467487-8467707(+)$1	220	94	186	187.0294
ugugcccuagacuggagugcaauggcgccaucucggcuuacugcaaccuccaccucccaggugcaagcgauuccccugccucagcuucccga	chr19:48984694-48984931(+)$1	237	110	202	176.1470
caacgcccaggcuggagugcaauggcacuaucucagcucgcugcaaccuucaccuccuggguucaagcaauucuccugccucagccuccuga	chr14:75598950-75599205(-)$1	255	132	224	181.7352
cugucaccaggccggagugcaguggugucaucucagaucacugcaaccuccaccucccagguucaagcgauuccccugccucagccugccaa	chr19:37035966-37036222(-)$1	256	118	210	173.6470
cugucgccaggcuggagugcguuggcacaaucucggcucacugcaaccuccgccuccuggguucaaucgauucuccugccucagccuccuga	chr4:38945625-38945853(+)$1	228	99	191	185.5588

#otherMatches

#Struct PSSM
::::::::dddd[eeeeeffffffbb[bbmmmmbbbb]ffffff22eeeeedddd::ddddvvvvvvvvvvvvvdddd:ffffff!!ammmm	chr19:50431632-50431881(-)$1	249	125	217	200.2647
ggg:ggggggg[eeeeehhhhhhhh!!bbmmmmbb22hhhhhhhh22eeeee333ggggggg::::HHHHHHHH:::::eeeeemmmmeeee	chr3:196557672-196557926(+)$1	254	120	212	186.2941
$$$$ggggggg[eeeeegggggggbb[bbmmmmbbbb]ggggggg22eeeee333ggggggg333eeeee333eeeee]eeeee::::::EE	chr10:72637484-72637739(+)$1	255	122	214	190.5588
hhhh]affffffccc]eeeee22ffffff::::::::eeeee!!eeeeerrrrrrrrreeeee22eeeee:::::::HHHHHHHH:::::::	chr10:69828134-69828346(-)$1	212	120	212	191.4411
bb!!ccc[dddd[eeeeeffffffbbrrrrrrrrrbb]ffffff22eeeeedddd4444ccc]bb]dddd22bb]ccc]eeeee:::::FFF	chr12:133349016-133349232(-)$1	216	120	212	190.9999
EEE{A:dddd[ffffffgggggggbb[annnnna]bb]ggggggg22ffffffddddffffff"""cccpppppppccc333ffffff::::	chr1:21101332-21101587(-)$1	255	128	220	165.8529
ccnnnnncccffffffddddmmmmdddd::ccc[ddddoooooodddd]ccc:::JJJJJJJJJJJJ::::::eeeeeffffffmmmmffff	chr16:1830644-1830906(+)$1	262	124	216	151.1470
hhhh22ccc::eeeee[ccceeeee[bbpppppppbbeeeee22ccceeeee::::EEEEEYYGGGGGGG~~~~BBZZZBB}CCC}BBYYCC	chr7:48003353-48003605(-)$1	252	120	212	140.9999
hhhhh::::ccc[ddddgggggggbb[bbmmmmbbbb]ggggggg22ddddcccBBYYGGGGGGG}BBffffff$$$$$eeeeemmmmeeee	chr11:61133853-61134110(+)$1	257	121	213	181.4411
bb!!ccc[dddd[eeeeeffffffbbrrrrrrrrrbb]ffffff22eeeeedddd4444ccc]bb]dddd22bb]ccc]eeeee::::::::	chr12:133348981-133349216(-)$1	235	104	196	190.9999
333==========ggggggg:::dddd[bb!!cccqqqqqqqqccc22bbdddd:::ddddvvvvvvvvvvvvvdddd:cccqqqqqqqqcc	chr19:5909405-5909619(+)$1	214	120	212	177.0294
d####ffffff[eeeee[ffffffbb[bbmmmmbbbb]ffffff333eeeee333ffffff4444dddd::::::::ccc[dddd!!ammmm	chrX:122736716-122736966(-)$1	250	126	218	191.4411
fcccnnnnnccc]ffffff]aFFFFFF?????CCC}GGGGGGG?????DDDD::ccc[ccc[bbmmmmbb]ccc]ccc:ffffff!!ammmm	chr16:23477142-23477368(-)$1	226	124	216	176.2941
bb!!dddddddd[ddddccc"""ccc[bbmmmmbbccc4444ccc22dddddddd333dddd]bbeeeee22ccc333dddd22eeeee]cc	chr4:175239118-175239364(+)$1	246	131	223	179.5294
hhhh22ffffff:eeeeeggggggg!!ccclllccc]ggggggg22eeeee:::::cccccc[ddddnnnnndddd]ccc]ccc::ffffff	chr20:43560099-43560339(+)$1	240	71	163	163.9411
hhhhh:::DDDD{DDDDhhhhhhhh[bbpppppppbbhhhhhhhh::ddddcccnnnnnccc333dddd:::DDDD}DDDD}EEEEE}CCC:	chr9:94056682-94056936(-)$1	254	124	216	180.5588
hhhhh:eeeee[eeeeedddd[bbbb[aooooooabb]bb]dddd22eeeee333eeeee::::::::::::::EEEEEffffff!!ammmm	chr4:38945602-38945825(+)$1	223	122	214	185.5588
4dddd22ffffffggggggg::GGGGGGG:::::bb[eeeee!!eeeeerrrrrrrrreeeee22eeeee]bb::::::ffffff!!ammmm	chr5:179265531-179265777(-)$1	246	119	211	192.0294
bb!!ccc[dddd[ddddgggggggccc[ammmmaccc]ggggggg22dddddddd4444ccc22bbcccddddiiiiiiiii]bb:eeeeeo	chr19:8467452-8467687(+)$1	235	129	221	187.0294
hhhh]eeeeeHHHHHHHHbbmmmmbbcccnnnnnccc:dddd!!eeeeerrrrrrrrreeeee22ddddHHHHHHHHhhhhhhhh!!ammmm	chr17:66418716-66418975(-)$1	259	123	215	164.5294
333==========ggggggg:DDDD{CCC::::a[ccc"""bb[eeeeerrrrrrrrreeeeebbccc]a::::eeeee"""dddd!!cccn	chr19:5909419-5909658(+)$1	239	106	198	177.0294
bb!!ggggggg[eeeeegggggggbb[bbmmmmbbbb]ggggggg22eeeee333ggggggg]bbeeeee22bb]bb:DDDD::::ddddhh	chr7:44102784-44103063(+)$1	279	134	226	143.3529
]bb:ccc[ccc[eeeeebb[ddddbbrrrrrrrrrbb]dddd]bb22eeeeecccccceeeee[eeeeepppppppeeeee]eeeeeddddo	chr22:41324116-41324375(+)$1	259	129	221	165.9999
cccc]iiiiiiiii]===========]===========4444bb::::ddddbbccc[eeeee"""ddddnnnnndddd333eeeee333cc	chr14:21928598-21928850(-)$1	252	124	216	179.0882
bb!!ggggggg!!dddd[a"""ccc[bbpppppppbb333ccc4444a]dddd22ggggggg]bbeeeee::HHHHHHHHddddmmmmdddd	chr6:158438354-158438601(+)$1	247	127	219	189.8235
hhhh]affffffccc]eeeee22ffffff::::::::eeeee!!eeeeerrrrrrrrreeeee22eeeee:::::::hhhhhhhh!!ammmm	chr10:69828093-69828334(-)$1	241	108	200	191.4411
eeeeeCCCYYBB}DDDD}FFFFFFcccccc"""ddddeeeee!!eeeee[annnnna]eeeee22eeeee55555dddd]ccc333ccc:::	chr14:21733064-21733276(-)$1	212	118	210	138.2058
}CCC::FFFFFF{BB{CCCKKA{EEEEEJJJJJJJJJJ:::bb[eeeeerrrrrrrrreeeeebb:cccpppppppccceeeeemmmmeeee	chr12:123741917-123742176(-)$1	259	131	223	197.6176
2gggggggdddd[dddddddd[ccc!!bbmmmmbb22ccc]dddd22dddddddd::eeeee[a!!hhhhhhhh[dddd[ddddmmmmdddd	chr15:44089500-44089750(+)$1	250	125	217	188.7941
2ggggggg]ccc:BB{JJJJJJJJJJKKJJJJJJJJJJ{CCCbbpppppppbb:::::eeeee[eeeeepppppppeeeee]eeeee::::C	chr19:8467487-8467707(+)$1	220	94	186	187.0294
gggggg"""bb[eeeeedddd[ccc[cccnnnnncccccc]dddd22eeeee22bb333ggggggga]gggggggbb::gggggggqqqqqq	chr19:48984694-48984931(+)$1	237	110	202	176.1470
$$$$ggggggg[eeeeedddd[bbbbrrrrrrrrrbb]bb]dddd22eeeee333ggggggg333eeeee22dddd22dddd22hhhhhhhh	chr14:75598950-75599205(-)$1	255	132	224	181.7352
hhhhhGGGGGGG}BB}DDDD}EEEEE}DDDD~~~~GGGGGGG:::::::::::::::ffffff"""cccpppppppccc333ffffff:ccc	chr19:37035966-37036222(-)$1	256	118	210	173.6470
hhhhh:eeeee[eeeeedddd[bbbb[aooooooabb]bb]dddd22eeeee333eeeee::::::::::::::::CCCeeeeemmmmeeee	chr4:38945625-38945853(+)$1	228	99	191	185.5588

#DB
........((((.(((((((((((((.((....)))).))))))..)))))))))..((((.............)))).((((((..(....	chr19:50431632-50431881(-)$1	1	125	217	200.2647
))).(((((((.(((((((((((((..((....))..))))))))..)))))...)))))))....)))))))).....(((((....))))	chr3:196557672-196557926(+)$1	1	120	212	186.2941
....(((((((.((((((((((((((.((....)))).)))))))..)))))...)))))))...)))))...))))).)))))......))	chr10:72637484-72637739(+)$1	1	122	214	190.5588
)))).)))))))))).)))))..))))))........(((((..(((((.........)))))..))))).......)))))))).......	chr10:69828134-69828346(-)$1	1	120	212	191.4411
((..(((.((((.(((((((((((((.........)).))))))..)))))))))....))).)).))))..)).))).))))).....)))	chr12:133349016-133349232(-)$1	1	120	212	190.9999
(((.(.((((.(((((((((((((((.(.....).)).)))))))..))))))))))((((((...(((.......)))...))))))....	chr1:21101332-21101587(-)$1	1	128	220	165.8529
((.....)))))))))((((....))))..(((.((((......)))).)))...))))))))))))......(((((((((((....))))	chr16:1830644-1830906(+)$1	1	124	216	151.1470
))))..)))..(((((.((((((((.((.......)))))))..))))))))....)))))..)))))))....))...)).))).))..))	chr7:48003353-48003605(-)$1	1	120	212	140.9999
)))))....(((.(((((((((((((.((....)))).)))))))..)))))))))..))))))).))((((((.....(((((....))))	chr11:61133853-61134110(+)$1	1	121	213	181.4411
((..(((.((((.(((((((((((((.........)).))))))..)))))))))....))).)).))))..)).))).)))))........	chr12:133348981-133349216(-)$1	1	104	196	190.9999
...)))))))))))))))))...((((.((..(((........)))..))))))...((((.............)))).(((........))	chr19:5909405-5909619(+)$1	1	120	212	177.0294
(....((((((.(((((.((((((((.((....)))).))))))...)))))...))))))....))))........(((.((((..(....	chrX:122736716-122736966(-)$1	1	126	218	191.4411
((((.....))).)))))).))))))).....))).))))))).....))))..(((.(((.((....)).))).))).((((((..(....	chr16:23477142-23477368(-)$1	1	124	216	176.2941
((..((((((((.(((((((...(((.((....)))))....)))..))))))))...)))).)))))))..)))...))))..))))).))	chr4:175239118-175239364(+)$1	1	131	223	179.5294
))))..)))))).((((((((((((..(((...))).)))))))..))))).....((((((.((((.....)))).))).)))..((((((	chr20:43560099-43560339(+)$1	1	71	163	163.9411
)))))...((((.((((((((((((.((.......))))))))))..(((((((.....)))...))))...)))).)))).))))).))).	chr9:94056682-94056936(-)$1	1	124	216	180.5588
))))).(((((.(((((((((.((((.(......))).)).))))..)))))...)))))..............)))))((((((..(....	chr4:38945602-38945825(+)$1	1	122	214	185.5588
.))))..)))))))))))))..(((((((.....((.(((((..(((((.........)))))..))))).))......((((((..(....	chr5:179265531-179265777(-)$1	1	119	211	192.0294
((..(((.((((.((((((((((((((.(....)))).)))))))..))))))))....)))..)))))))))))))))))).)).(((((.	chr19:8467452-8467687(+)$1	1	129	221	187.0294
)))).)))))((((((((((....))(((.....))).((((..(((((.........)))))..))))))))))))((((((((..(....	chr17:66418716-66418975(-)$1	1	123	215	164.5294
...))))))))))))))))).((((.(((....(.(((...((.(((((.........)))))))))).)....(((((...((((..(((.	chr19:5909419-5909658(+)$1	1	106	198	177.0294
((..(((((((.((((((((((((((.((....)))).)))))))..)))))...))))))).)))))))..)).)).))))....((((((	chr7:44102784-44103063(+)$1	1	134	226	143.3529
.)).(((.(((.(((((((.((((((.........)).)))).))..)))))))))))(((((.(((((.......))))).)))))((((.	chr22:41324116-41324375(+)$1	1	129	221	165.9999
)))).))))))))).))))))))))).)))))))))))....))....(((((((((.(((((...((((.....))))...)))))...))	chr14:21928598-21928850(-)$1	1	124	216	179.0882
((..(((((((..((((.(...(((.((.......))...)))....).))))..))))))).)))))))..))))))))((((....))))	chr6:158438354-158438601(+)$1	1	127	219	189.8235
)))).)))))))))).)))))..))))))........(((((..(((((.........)))))..))))).......((((((((..(....	chr10:69828093-69828334(-)$1	1	108	200	191.4411
))))))))..)).)))).))))))((((((...(((((((((..(((((.(.....).)))))..))))).....)))).)))...)))...	chr14:21733064-21733276(-)$1	1	118	210	138.2058
.)))..((((((.((.(((..(.(((((((((((((((...((.(((((.........))))))).(((.......)))(((((....))))	chr12:123741917-123742176(-)$1	1	131	223	197.6176
.)))))))((((.((((((((.(((..((....))..))).))))..))))))))..(((((.(..((((((((.((((.((((....))))	chr15:44089500-44089750(+)$1	1	125	217	188.7941
.))))))).))).((.((((((((((..((((((((((.(((((.......)).....(((((.(((((.......))))).)))))....)	chr19:8467487-8467707(+)$1	1	94	186	187.0294
((((((...((.(((((((((.(((.(((.....)))))).))))..)))))..))...)))))))).)))))))))..(((((((......	chr19:48984694-48984931(+)$1	1	110	202	176.1470
....(((((((.(((((((((.((((.........)).)).))))..)))))...)))))))...)))))..))))..))))..))))))))	chr14:75598950-75599205(-)$1	1	132	224	181.7352
)))))))))))).)).)))).))))).))))....)))))))...............((((((...(((.......)))...)))))).(((	chr19:37035966-37036222(-)$1	1	118	210	173.6470
))))).(((((.(((((((((.((((.(......))).)).))))..)))))...)))))................)))(((((....))))	chr4:38945625-38945853(+)$1	1	99	191	185.5588

#PSSM
u : 0.64	c : 0.32	g : 0.02	
g : 0.58	u : 0.29	a : 0.05	c : 0.05	
u : 0.70	g : 0.20	c : 0.05	a : 0.02	
u : 0.64	c : 0.29	g : 0.05	
g : 0.55	c : 0.20	a : 0.14	u : 0.08	
c : 0.73	g : 0.17	u : 0.05	a : 0.02	
c : 0.85	u : 0.08	g : 0.05	
c : 0.88	u : 0.05	g : 0.02	a : 0.02	
a : 0.82	u : 0.14	g : 0.02	
g : 0.97	u : 0.02	
g : 0.85	u : 0.05	a : 0.05	c : 0.02	
c : 0.85	u : 0.05	a : 0.05	g : 0.02	
u : 0.94	g : 0.02	c : 0.02	
g : 0.94	a : 0.02	u : 0.02	
g : 0.91	a : 0.05	c : 0.02	
a : 0.85	g : 0.08	c : 0.05	
g : 0.91	a : 0.05	u : 0.02	
u : 0.94	c : 0.02	g : 0.02	
g : 0.97	c : 0.02	
c : 0.85	u : 0.11	g : 0.02	
a : 0.82	g : 0.17	
g : 0.70	a : 0.17	u : 0.08	c : 0.02	
u : 1.00	
g : 0.97	a : 0.02	
g : 0.94	a : 0.05	
c : 0.73	u : 0.26	
g : 0.58	a : 0.35	u : 0.05	
c : 0.55	u : 0.44	
g : 0.70	a : 0.17	c : 0.08	u : 0.02	
a : 0.91	c : 0.05	g : 0.02	
u : 1.00	
c : 0.91	u : 0.08	
u : 0.94	a : 0.05	
c : 0.73	u : 0.20	g : 0.05	
g : 0.50	a : 0.35	c : 0.08	u : 0.05	
g : 0.97	a : 0.02	
c : 0.97	a : 0.02	
u : 1.00	
c : 0.82	u : 0.11	a : 0.05	
a : 0.94	g : 0.05	
c : 1.00	
u : 0.94	c : 0.05	
g : 0.94	a : 0.05	
c : 0.97	u : 0.02	
a : 0.97	g : 0.02	
a : 0.85	g : 0.14	
c : 0.85	a : 0.05	g : 0.05	u : 0.02	
c : 1.00	
u : 0.97	c : 0.02	
c : 0.94	u : 0.05	
c : 0.76	u : 0.17	g : 0.05	
g : 0.55	a : 0.41	u : 0.02	
c : 0.94	u : 0.02	a : 0.02	
c : 0.88	u : 0.11	
u : 0.94	c : 0.02	a : 0.02	
c : 0.82	a : 0.08	u : 0.08	
c : 0.97	u : 0.02	
c : 0.58	u : 0.41	
a : 0.52	g : 0.41	u : 0.02	c : 0.02	
g : 0.97	a : 0.02	
g : 1.00	
u : 0.94	c : 0.05	
u : 0.97	g : 0.02	
c : 0.97	g : 0.02	
a : 1.00	
a : 0.79	g : 0.08	c : 0.05	u : 0.05	
g : 0.94	u : 0.05	
c : 0.70	u : 0.26	g : 0.02	
g : 0.64	a : 0.32	c : 0.02	
a : 0.97	g : 0.02	
u : 1.00	
u : 0.94	c : 0.05	
c : 1.00	
u : 0.94	c : 0.05	
c : 0.85	u : 0.08	a : 0.02	g : 0.02	
c : 0.82	g : 0.14	a : 0.02	
u : 0.91	c : 0.08	
g : 0.82	u : 0.08	a : 0.05	c : 0.02	
c : 0.85	u : 0.11	g : 0.02	
c : 0.97	a : 0.02	
u : 0.97	g : 0.02	
c : 1.00	
a : 0.94	c : 0.02	g : 0.02	
g : 0.85	u : 0.08	a : 0.05	
c : 0.94	u : 0.02	a : 0.02	
c : 0.97	u : 0.02	
u : 0.97	c : 0.02	
c : 0.82	g : 0.08	u : 0.05	a : 0.02	
c : 0.88	u : 0.08	a : 0.02	
c : 0.55	u : 0.35	a : 0.05	g : 0.02	
g : 0.82	a : 0.14	u : 0.02	
a : 0.97	g : 0.02	

#score	6063.411764705868
#seq	34
#width	92
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_transcript_m3_run2.nuc.txt

#NT
CUGG	chr19:1411954-1412235(+)$1	281	91	95	12.0000
CUGG	chr19:1019584-1019846(-)$1	262	1	5	12.0000
CUGG	chr22:41487712-41487990(+)$1	278	94	98	12.0000
CUGG	chr1:2178054-2178318(+)$1	264	25	29	12.0000
cugg	chr2:191513665-191513935(+)$1	270	168	172	12.0000
CUGG	chr11:65194644-65194862(+)$1	218	161	165	12.0000
cugg	chr9:137317370-137317621(+)$1	251	75	79	12.0000
cugg	chr10:32175814-32176097(-)$1	283	147	151	12.0000
CUGG	chr19:1648415-1648690(-)$1	275	70	74	12.0000
CUGG	chr19:56631948-56632186(-)$1	238	121	125	12.0000
CUGG	chr2:234762558-234762891(-)$1	333	19	23	12.0000
CUGG	chr5:177658849-177659126(-)$1	277	8	12	12.0000
CUGG	chrX:153235618-153235871(-)$1	253	126	130	12.0000
CUGG	chr19:50190903-50191164(+)$1	261	38	42	12.0000
cugg	chr1:2200300-2200517(+)$1	217	112	116	12.0000
CUGG	chr1:198126484-198126767(+)$1	283	146	150	12.0000
CUGG	chr1:212957405-212957709(-)$1	304	2	6	12.0000
CUGG	chr6:74227080-74227335(-)$1	255	151	155	12.0000
CUGG	chr1:27928071-27928309(-)$1	238	36	40	12.0000
CUGG	chr2:113999252-113999548(+)$1	296	51	55	12.0000
CUGG	chr1:2207407-2207669(+)$1	262	15	19	12.0000
CUGG	chr3:196477415-196477692(+)$1	277	256	260	12.0000
CUGG	chr11:991824-992105(+)$1	281	8	12	12.0000
CUGG	chr8:142426078-142426355(+)$1	277	6	10	12.0000
CUGG	chr11:2412413-2412682(+)$1	269	0	4	12.0000
CUGG	chr17:79390312-79390626(+)$1	314	185	189	12.0000
CUGG	chr5:34192092-34192340(-)$1	248	16	20	12.0000
CUGG	chr17:79231818-79232110(-)$1	292	35	39	12.0000
CUGG	chr1:1180799-1181088(-)$1	289	49	53	12.0000
CUGG	chr10:71929938-71930164(-)$1	226	42	46	12.0000
CUGG	chr16:89366931-89367210(-)$1	279	4	8	12.0000
CUGG	chr11:2405826-2406098(+)$1	272	1	5	12.0000
CUGG	chr11:64511565-64511827(-)$1	262	15	19	12.0000
CUGG	chr1:2323498-2323799(+)$1	301	106	110	12.0000
CUGG	chr10:80829563-80829837(+)$1	274	58	62	12.0000
CUGG	chr10:49515076-49515407(+)$1	331	181	185	12.0000
CUGG	chr1:1497154-1497415(-)$1	261	134	138	12.0000
CUGG	chr12:54389691-54389953(+)$1	262	244	248	12.0000
CUGG	chr17:42401406-42401661(-)$1	255	17	21	12.0000
CUGG	chr1:2162075-2162322(+)$1	247	226	230	12.0000
CUGG	chr1:36787636-36787908(+)$1	272	100	104	12.0000
CUGG	chrX:129216538-129216790(-)$1	252	31	35	12.0000
CUGG	chr22:50050847-50051111(-)$1	264	179	183	12.0000
cugg	chr7:1480077-1480314(-)$1	237	105	109	12.0000
CUGG	chr19:2270895-2271108(+)$1	213	157	161	12.0000
CUGG	chr16:4661300-4661549(-)$1	249	43	47	12.0000
CUGG	chr4:111119077-111119327(-)$1	250	5	9	12.0000
CUGG	chr1:22415383-22415652(+)$1	269	130	134	12.0000
CUGG	chr16:88561953-88562200(+)$1	247	13	17	12.0000
CUGG	chr13:113207144-113207411(-)$1	267	10	14	12.0000
CUGG	chr1:27918488-27918740(-)$1	252	0	4	12.0000
cugg	chr17:20945120-20945392(-)$1	272	20	24	12.0000
cugg	chr19:1645398-1645664(-)$1	266	227	231	12.0000
CUGG	chr19:5052290-5052589(+)$1	299	2	6	12.0000
CUGG	chr4:719959-720227(+)$1	268	117	121	12.0000
CUGG	chr14:105631424-105631702(-)$1	278	84	88	12.0000
cugg	chr19:1087348-1087630(-)$1	282	44	48	12.0000
CUGG	chr11:2014337-2014606(+)$1	269	66	70	12.0000
CUGG	chr19:576873-577137(+)$1	264	117	121	12.0000
CUGG	chr1:183441783-183442094(+)$1	311	19	23	12.0000
CUGG	chrX:47053370-47053710(+)$1	340	84	88	12.0000
CUGG	chr13:114538964-114539233(-)$1	269	90	94	12.0000
cugg	chr9:139560089-139560364(+)$1	275	234	238	12.0000
CUGG	chr19:2011052-2011311(-)$1	259	132	136	12.0000
CUGG	chr16:1728343-1728648(+)$1	305	275	279	12.0000
CUGG	chr1:2333430-2333701(+)$1	271	146	150	12.0000
CUGG	chr5:176739416-176739715(-)$1	299	97	101	12.0000
cugg	chr20:35486055-35486292(-)$1	237	116	120	12.0000
cugg	chr4:8596196-8596439(+)$1	243	21	25	12.0000
CUGG	chr12:132389255-132389503(+)$1	248	11	15	12.0000
CUGG	chr20:60928928-60929207(-)$1	279	31	35	12.0000
CUGG	chr3:51997975-51998247(-)$1	272	81	85	12.0000
CUGG	chr1:54819760-54820014(-)$1	254	31	35	12.0000
cugg	chr11:69177003-69177278(+)$1	275	238	242	12.0000
CUGG	chr5:1110751-1111035(-)$1	284	67	71	12.0000
CUGG	chr19:56147723-56147979(+)$1	256	115	119	12.0000
CUGG	chr13:114163126-114163363(+)$1	237	98	102	12.0000
CUGG	chr13:113889435-113889712(+)$1	277	67	71	12.0000
CUGG	chr3:196755572-196755823(-)$1	251	96	100	12.0000
CUGG	chr1:27920060-27920329(-)$1	269	39	43	12.0000
CUGG	chr14:105632463-105632705(-)$1	242	6	10	12.0000
CUGG	chr7:5635395-5635635(+)$1	240	70	74	12.0000
CUGG	chr20:55968331-55968591(+)$1	260	72	76	12.0000
CUGG	chr1:228276854-228277095(+)$1	241	58	62	12.0000
cugg	chr20:60725625-60725872(+)$1	247	174	178	12.0000
CUGG	chr12:133319064-133319477(-)$1	413	393	397	12.0000
CUGG	chrX:153979532-153979827(-)$1	295	210	214	12.0000
CUGG	chr1:228329464-228329716(+)$1	252	59	63	12.0000

#otherMatches

#Struct PSSM
!!ff	chr2:242830301-242830588(+)$1	287	219	223	12.0000
addd	chr19:1411954-1412235(+)$1	281	91	95	12.0000
::CC	chr19:1019584-1019846(-)$1	262	1	5	12.0000
hhhh	chr22:41487712-41487990(+)$1	278	94	98	12.0000
22cc	chr1:2178054-2178318(+)$1	264	25	29	12.0000
cc77	chr2:191513665-191513935(+)$1	270	168	172	12.0000
B}CC	chr11:65194644-65194862(+)$1	218	161	165	12.0000
eee!	chr9:137317370-137317621(+)$1	251	75	79	12.0000
mmee	chr10:32175814-32176097(-)$1	283	147	151	12.0000
::::	chr19:1648415-1648690(-)$1	275	70	74	12.0000
eeed	chr19:56631948-56632186(-)$1	238	121	125	12.0000
LLGG	chr2:234762558-234762891(-)$1	333	19	23	12.0000
B{EE	chr5:177658849-177659126(-)$1	277	8	12	12.0000
cccc	chrX:153235618-153235871(-)$1	253	126	130	12.0000
##bb	chr19:50190903-50191164(+)$1	261	38	42	12.0000
!!dd	chr1:2200300-2200517(+)$1	217	112	116	12.0000
ccbb	chr1:198126484-198126767(+)$1	283	146	150	12.0000
:===	chr1:212957405-212957709(-)$1	304	2	6	12.0000
d[bb	chr6:74227080-74227335(-)$1	255	151	155	12.0000
bb""	chr1:27928071-27928309(-)$1	238	36	40	12.0000
::cc	chr2:113999252-113999548(+)$1	296	51	55	12.0000
EEE:	chr1:2207407-2207669(+)$1	262	15	19	12.0000
6ddd	chr3:196477415-196477692(+)$1	277	256	260	12.0000
GGGG	chr11:991824-992105(+)$1	281	8	12	12.0000
JJJJ	chr8:142426078-142426355(+)$1	277	6	10	12.0000
:FFF	chr11:2412413-2412682(+)$1	269	0	4	12.0000
dddb	chr17:79390312-79390626(+)$1	314	185	189	12.0000
ii!!	chr5:34192092-34192340(-)$1	248	16	20	12.0000
bb]b	chr17:79231818-79232110(-)$1	292	35	39	12.0000
eeee	chr1:1180799-1181088(-)$1	289	49	53	12.0000
D{DD	chr10:71929938-71930164(-)$1	226	42	46	12.0000
JJJJ	chr16:89366931-89367210(-)$1	279	4	8	12.0000
CCC:	chr11:2405826-2406098(+)$1	272	1	5	12.0000
ffff	chr11:64511565-64511827(-)$1	262	15	19	12.0000
bb]a	chr1:2323498-2323799(+)$1	301	106	110	12.0000
BKKG	chr10:80829563-80829837(+)$1	274	58	62	12.0000
gggg	chr10:49515076-49515407(+)$1	331	181	185	12.0000
eeee	chr1:1497154-1497415(-)$1	261	134	138	12.0000
dddB	chr12:54389691-54389953(+)$1	262	244	248	12.0000
gggg	chr17:42401406-42401661(-)$1	255	17	21	12.0000
ffff	chr1:2162075-2162322(+)$1	247	226	230	12.0000
nnnn	chr1:36787636-36787908(+)$1	272	100	104	12.0000
eeee	chrX:129216538-129216790(-)$1	252	31	35	12.0000
FFFF	chr22:50050847-50051111(-)$1	264	179	183	12.0000
{EEE	chr7:1480077-1480314(-)$1	237	105	109	12.0000
c]dd	chr19:2270895-2271108(+)$1	213	157	161	12.0000
h]bb	chr16:4661300-4661549(-)$1	249	43	47	12.0000
:::D	chr4:111119077-111119327(-)$1	250	5	9	12.0000
22gg	chr1:22415383-22415652(+)$1	269	130	134	12.0000
ffll	chr16:88561953-88562200(+)$1	247	13	17	12.0000
dd[b	chr13:113207144-113207411(-)$1	267	10	14	12.0000
:eee	chr1:27918488-27918740(-)$1	252	0	4	12.0000
cc::	chr17:20945120-20945392(-)$1	272	20	24	12.0000
EE}A	chr19:1645398-1645664(-)$1	266	227	231	12.0000
B{FF	chr19:5052290-5052589(+)$1	299	2	6	12.0000
HHHb	chr4:719959-720227(+)$1	268	117	121	12.0000
eeem	chr14:105631424-105631702(-)$1	278	84	88	12.0000
:CCC	chr19:1087348-1087630(-)$1	282	44	48	12.0000
iDDD	chr11:2014337-2014606(+)$1	269	66	70	12.0000
DDFF	chr19:576873-577137(+)$1	264	117	121	12.0000
dd[b	chr1:183441783-183442094(+)$1	311	19	23	12.0000
iiie	chrX:47053370-47053710(+)$1	340	84	88	12.0000
llbb	chr13:114538964-114539233(-)$1	269	90	94	12.0000
==]a	chr9:139560089-139560364(+)$1	275	234	238	12.0000
bb[e	chr19:2011052-2011311(-)$1	259	132	136	12.0000
]ddd	chr16:1728343-1728648(+)$1	305	275	279	12.0000
eeem	chr1:2333430-2333701(+)$1	271	146	150	12.0000
dddd	chr5:176739416-176739715(-)$1	299	97	101	12.0000
JJJJ	chr20:35486055-35486292(-)$1	237	116	120	12.0000
ffff	chr4:8596196-8596439(+)$1	243	21	25	12.0000
ddd[	chr12:132389255-132389503(+)$1	248	11	15	12.0000
fff[	chr20:60928928-60929207(-)$1	279	31	35	12.0000
44dd	chr3:51997975-51998247(-)$1	272	81	85	12.0000
cc!!	chr1:54819760-54820014(-)$1	254	31	35	12.0000
FFFF	chr11:69177003-69177278(+)$1	275	238	242	12.0000
dmmm	chr5:1110751-1111035(-)$1	284	67	71	12.0000
hh:i	chr19:56147723-56147979(+)$1	256	115	119	12.0000
cc33	chr13:114163126-114163363(+)$1	237	98	102	12.0000
a[cc	chr13:113889435-113889712(+)$1	277	67	71	12.0000
YYCC	chr3:196755572-196755823(-)$1	251	96	100	12.0000
qqqe	chr1:27920060-27920329(-)$1	269	39	43	12.0000
HHee	chr14:105632463-105632705(-)$1	242	6	10	12.0000
eee]	chr7:5635395-5635635(+)$1	240	70	74	12.0000
cc]e	chr20:55968331-55968591(+)$1	260	72	76	12.0000
DDDE	chr1:228276854-228277095(+)$1	241	58	62	12.0000
[a[c	chr20:60725625-60725872(+)$1	247	174	178	12.0000
::CC	chr12:133319064-133319477(-)$1	413	393	397	12.0000
oddd	chrX:153979532-153979827(-)$1	295	210	214	12.0000
====	chr1:228329464-228329716(+)$1	252	59	63	12.0000

#DB
..((	chr2:242830301-242830588(+)$1	1	219	223	12.0000
))))	chr19:1411954-1412235(+)$1	1	91	95	12.0000
..((	chr19:1019584-1019846(-)$1	1	1	5	12.0000
))))	chr22:41487712-41487990(+)$1	1	94	98	12.0000
..))	chr1:2178054-2178318(+)$1	1	25	29	12.0000
))..	chr2:191513665-191513935(+)$1	1	168	172	12.0000
).))	chr11:65194644-65194862(+)$1	1	161	165	12.0000
(((.	chr9:137317370-137317621(+)$1	1	75	79	12.0000
..))	chr10:32175814-32176097(-)$1	1	147	151	12.0000
....	chr19:1648415-1648690(-)$1	1	70	74	12.0000
((((	chr19:56631948-56632186(-)$1	1	121	125	12.0000
..((	chr2:234762558-234762891(-)$1	1	19	23	12.0000
(.((	chr5:177658849-177659126(-)$1	1	8	12	12.0000
))))	chrX:153235618-153235871(-)$1	1	126	130	12.0000
..((	chr19:50190903-50191164(+)$1	1	38	42	12.0000
..((	chr1:2200300-2200517(+)$1	1	112	116	12.0000
((((	chr1:198126484-198126767(+)$1	1	146	150	12.0000
.(((	chr1:212957405-212957709(-)$1	1	2	6	12.0000
(.((	chr6:74227080-74227335(-)$1	1	151	155	12.0000
((..	chr1:27928071-27928309(-)$1	1	36	40	12.0000
..((	chr2:113999252-113999548(+)$1	1	51	55	12.0000
(((.	chr1:2207407-2207669(+)$1	1	15	19	12.0000
.)))	chr3:196477415-196477692(+)$1	1	256	260	12.0000
((((	chr11:991824-992105(+)$1	1	8	12	12.0000
((((	chr8:142426078-142426355(+)$1	1	6	10	12.0000
.(((	chr11:2412413-2412682(+)$1	1	0	4	12.0000
))))	chr17:79390312-79390626(+)$1	1	185	189	12.0000
((..	chr5:34192092-34192340(-)$1	1	16	20	12.0000
)).)	chr17:79231818-79232110(-)$1	1	35	39	12.0000
((((	chr1:1180799-1181088(-)$1	1	49	53	12.0000
(.((	chr10:71929938-71930164(-)$1	1	42	46	12.0000
((((	chr16:89366931-89367210(-)$1	1	4	8	12.0000
(((.	chr11:2405826-2406098(+)$1	1	1	5	12.0000
((((	chr11:64511565-64511827(-)$1	1	15	19	12.0000
)).)	chr1:2323498-2323799(+)$1	1	106	110	12.0000
(..(	chr10:80829563-80829837(+)$1	1	58	62	12.0000
((((	chr10:49515076-49515407(+)$1	1	181	185	12.0000
))))	chr1:1497154-1497415(-)$1	1	134	138	12.0000
))))	chr12:54389691-54389953(+)$1	1	244	248	12.0000
((((	chr17:42401406-42401661(-)$1	1	17	21	12.0000
))))	chr1:2162075-2162322(+)$1	1	226	230	12.0000
....	chr1:36787636-36787908(+)$1	1	100	104	12.0000
))))	chrX:129216538-129216790(-)$1	1	31	35	12.0000
))))	chr22:50050847-50051111(-)$1	1	179	183	12.0000
.(((	chr7:1480077-1480314(-)$1	1	105	109	12.0000
).))	chr19:2270895-2271108(+)$1	1	157	161	12.0000
).))	chr16:4661300-4661549(-)$1	1	43	47	12.0000
...(	chr4:111119077-111119327(-)$1	1	5	9	12.0000
..))	chr1:22415383-22415652(+)$1	1	130	134	12.0000
((..	chr16:88561953-88562200(+)$1	1	13	17	12.0000
((.(	chr13:113207144-113207411(-)$1	1	10	14	12.0000
.(((	chr1:27918488-27918740(-)$1	1	0	4	12.0000
))..	chr17:20945120-20945392(-)$1	1	20	24	12.0000
)).)	chr19:1645398-1645664(-)$1	1	227	231	12.0000
(.((	chr19:5052290-5052589(+)$1	1	2	6	12.0000
((((	chr4:719959-720227(+)$1	1	117	121	12.0000
(((.	chr14:105631424-105631702(-)$1	1	84	88	12.0000
.(((	chr19:1087348-1087630(-)$1	1	44	48	12.0000
)(((	chr11:2014337-2014606(+)$1	1	66	70	12.0000
((((	chr19:576873-577137(+)$1	1	117	121	12.0000
((.(	chr1:183441783-183442094(+)$1	1	19	23	12.0000
((((	chrX:47053370-47053710(+)$1	1	84	88	12.0000
..))	chr13:114538964-114539233(-)$1	1	90	94	12.0000
)).)	chr9:139560089-139560364(+)$1	1	234	238	12.0000
((.(	chr19:2011052-2011311(-)$1	1	132	136	12.0000
.)))	chr16:1728343-1728648(+)$1	1	275	279	12.0000
(((.	chr1:2333430-2333701(+)$1	1	146	150	12.0000
((((	chr5:176739416-176739715(-)$1	1	97	101	12.0000
((((	chr20:35486055-35486292(-)$1	1	116	120	12.0000
((((	chr4:8596196-8596439(+)$1	1	21	25	12.0000
(((.	chr12:132389255-132389503(+)$1	1	11	15	12.0000
(((.	chr20:60928928-60929207(-)$1	1	31	35	12.0000
..))	chr3:51997975-51998247(-)$1	1	81	85	12.0000
((..	chr1:54819760-54820014(-)$1	1	31	35	12.0000
))))	chr11:69177003-69177278(+)$1	1	238	242	12.0000
(...	chr5:1110751-1111035(-)$1	1	67	71	12.0000
)).(	chr19:56147723-56147979(+)$1	1	115	119	12.0000
))..	chr13:114163126-114163363(+)$1	1	98	102	12.0000
(.((	chr13:113889435-113889712(+)$1	1	67	71	12.0000
..))	chr3:196755572-196755823(-)$1	1	96	100	12.0000
...)	chr1:27920060-27920329(-)$1	1	39	43	12.0000
((((	chr14:105632463-105632705(-)$1	1	6	10	12.0000
))).	chr7:5635395-5635635(+)$1	1	70	74	12.0000
)).)	chr20:55968331-55968591(+)$1	1	72	76	12.0000
((((	chr1:228276854-228277095(+)$1	1	58	62	12.0000
.(.(	chr20:60725625-60725872(+)$1	1	174	178	12.0000
..))	chr12:133319064-133319477(-)$1	1	393	397	12.0000
.)))	chrX:153979532-153979827(-)$1	1	210	214	12.0000
((((	chr1:228329464-228329716(+)$1	1	59	63	12.0000

#PSSM
C : 0.85	c : 0.14	
U : 0.85	u : 0.14	
G : 0.85	g : 0.14	
G : 0.85	g : 0.14	

#score	1068.0000000000005
#seq	89
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_CDS_m1_run1.nuc.txt

#NT
AAGGAAGAG	chr20:55027720-55028026(+)$1	306	291	300	16.8214
CAGGAAGAU	chr2:174230106-174230421(+)$1	315	70	79	15.5714
GAGGCAGAG	chr14:103806782-103806999(+)$1	217	59	68	14.1428
CAGGAAGGA	chr1:171511064-171511317(+)$1	253	234	243	11.7321
CAGGAGGAG	chr15:44109476-44109701(-)$1	225	201	210	16.3750
CAGGAGGAA	chrX:70349492-70349726(+)$1	234	73	82	13.3392
CAGGCUGAG	chr7:2257495-2257750(-)$1	255	3	12	12.4464
AAAGAAGAG	chr2:71654294-71654547(+)$1	253	9	18	13.2500
CAGGCGGAG	chr22:20078865-20079121(+)$1	256	208	217	13.0714
AAAGAAGAG	chr19:10794032-10794306(+)$1	274	134	143	13.2500
CAGGUGGAG	chr19:10230269-10230476(-)$1	207	122	131	12.5357
CAGGAAGAA	chr12:72037769-72038065(-)$1	296	128	137	16.2857
UAGGAUGAG	chr2:97274499-97274812(-)$1	313	8	17	12.9821
CUGGCAGAG	chr1:154145540-154145765(-)$1	225	81	90	11.7321
CAGGAACAA	chr10:91511042-91511284(+)$1	242	113	122	12.0000
GAGGAAGAA	chr7:139796358-139796654(-)$1	296	116	125	14.4107
CAGGAAGAA	chr8:103300300-103300530(-)$1	230	84	93	16.2857
CAGGAGCAG	chr11:110108203-110108457(-)$1	254	229	238	12.0892
CAGGGAGAG	chr12:132490612-132490880(+)$1	268	66	75	15.7500
CAGGAGGAG	chr2:135920541-135920770(+)$1	229	101	110	16.3750
GAGGAAGAG	chr17:49083345-49083579(-)$1	234	117	126	17.4464
CAGGAAGAG	chr10:75003475-75003752(-)$1	277	68	77	19.3214
CAAGAACAG	chr1:229461006-229461258(-)$1	252	123	132	11.4642
gaggaagag	chr11:129991504-129991741(+)$1	237	133	142	17.4464
CAUGAAGAG	chr4:1919949-1920223(+)$1	274	178	187	15.5714
GAUGAAGAG	chr4:39870915-39871158(-)$1	243	112	121	13.6964
GGGGAAGAG	chr20:62577060-62577293(-)$1	233	75	84	12.9821
CAGAAAGAG	chr6:116979868-116980107(-)$1	239	84	93	14.8571
GAGGAAGAA	chr7:72397253-72397600(+)$1	347	201	210	14.4107
GAGGAAGAG	chr2:232577051-232577257(+)$1	206	103	112	17.4464
CAGGCAAAG	chr19:47233888-47234188(-)$1	300	66	75	11.6428
GAGGAAGAG	chr1:154525456-154525737(-)$1	281	122	131	17.4464
CAUGAAGAA	chr2:113416391-113416677(+)$1	286	75	84	12.5357
gaggaagag	chr6:44217927-44218149(+)$1	222	142	151	17.4464
AAGGAAGUG	chr14:102452878-102453140(+)$1	262	111	120	12.4464
GAGAAAGAG	chr6:168352130-168352395(+)$1	265	151	160	12.9821
CAGGGAGAU	chr4:174254119-174254323(-)$1	204	23	32	12.0000
CAGGAGGAG	chr17:8396950-8397227(-)$1	277	33	42	16.3750
CAGGAAGAG	chr6:10912805-10913028(+)$1	223	1	10	19.3214
CAGGAAGUG	chr22:36699943-36700172(-)$1	229	126	135	14.9464
CAGGCGGAG	chr19:54625151-54625420(+)$1	269	186	195	13.0714
ucggaagag	chr9:116170923-116171279(-)$1	356	90	99	12.0892
CAGGAGGAG	chr1:36754913-36755198(+)$1	285	93	102	16.3750
CAUGAAGAA	chr8:124383408-124383629(-)$1	221	84	93	12.5357
GAAGAAGAG	chr6:87964829-87965099(+)$1	270	65	74	13.8750
CAGGAAAAG	chr19:10781727-10781959(+)$1	232	72	81	14.9464
AAGGAAGAG	chr6:129962868-129963160(-)$1	292	265	274	16.8214
GAGAAAGAG	chr1:160200993-160201265(-)$1	272	87	96	12.9821
CUGGAAGAG	chr7:135290869-135291074(+)$1	205	95	104	15.0357
CAGGCUGAG	chr9:35685647-35685878(-)$1	231	98	107	12.4464
CAAGAAGAG	chr14:20923971-20924213(+)$1	242	111	120	15.7500
CAGGGGGAG	chr1:32645869-32646163(+)$1	294	275	284	12.8035
CAGGGAGAG	chrX:122866705-122866953(-)$1	248	136	145	15.7500
caagaagaa	chr2:100019331-100019644(-)$1	313	130	139	12.7142
AUGGAAGAG	chr11:46811621-46811836(-)$1	215	193	202	12.5357

#otherMatches

#Struct PSSM
33a]bb]dd	chrX:122756894-122757112(-)$1	218	112	121	12.1785
ZDDDD}DDD	chr20:55027720-55028026(+)$1	306	291	300	16.8214
GCCC::eee	chr2:174230106-174230421(+)$1	315	70	79	15.5714
!!a[ggggg	chr14:103806782-103806999(+)$1	217	59	68	14.1428
CYYEEEEEZ	chr1:171511064-171511317(+)$1	253	234	243	11.7321
dddd:DDDD	chr15:44109476-44109701(-)$1	225	201	210	16.3750
ammmma22d	chrX:70349492-70349726(+)$1	234	73	82	13.3392
::EEEEE{D	chr7:2257495-2257750(-)$1	255	3	12	12.4464
NNNNCCC{A	chr2:71654294-71654547(+)$1	253	9	18	13.2500
ccc]a]fff	chr22:20078865-20079121(+)$1	256	208	217	13.0714
2ccc22eee	chr19:10794032-10794306(+)$1	274	134	143	13.2500
a22gggggg	chr19:10230269-10230476(-)$1	207	122	131	12.5357
:::::::::	chr12:72037769-72038065(-)$1	296	128	137	16.2857
FFFFFLLLE	chr2:97274499-97274812(-)$1	313	8	17	12.9821
DDD{A:eee	chr1:154145540-154145765(-)$1	225	81	90	11.7321
44ffffff:	chr10:91511042-91511284(+)$1	242	113	122	12.0000
dddd::ccc	chr7:139796358-139796654(-)$1	296	116	125	14.4107
a''''''''	chr8:103300300-103300530(-)$1	230	84	93	16.2857
c]bb]ffff	chr11:110108203-110108457(-)$1	254	229	238	12.0892
epppppppe	chr12:132490612-132490880(+)$1	268	66	75	15.7500
:::::ccc[	chr2:135920541-135920770(+)$1	229	101	110	16.3750
[bb!!hhhh	chr17:49083345-49083579(-)$1	234	117	126	17.4464
qqqqqqqqd	chr10:75003475-75003752(-)$1	277	68	77	19.3214
bb]ccca]e	chr1:229461006-229461258(-)$1	252	123	132	11.4642
dddd:::::	chr11:129991504-129991741(+)$1	237	133	142	17.4464
HHHH}HHHH	chr4:1919949-1920223(+)$1	274	178	187	15.5714
ccc22a]bb	chr4:39870915-39871158(-)$1	243	112	121	13.6964
dddd22ccc	chr20:62577060-62577293(-)$1	233	75	84	12.9821
ddddrrrrr	chr6:116979868-116980107(-)$1	239	84	93	14.8571
}BB~~~~DD	chr7:72397253-72397600(+)$1	347	201	210	14.4107
oobb]gggg	chr2:232577051-232577257(+)$1	206	103	112	17.4464
EEEE:::::	chr19:47233888-47234188(-)$1	300	66	75	11.6428
3ccc::::G	chr1:154525456-154525737(-)$1	281	122	131	17.4464
EEEOOOOOO	chr2:113416391-113416677(+)$1	286	75	84	12.5357
fff]a6666	chr6:44217927-44218149(+)$1	222	142	151	17.4464
>>>>>>>ff	chr14:102452878-102453140(+)$1	262	111	120	12.4464
^^^^^^^^^	chr6:168352130-168352395(+)$1	265	151	160	12.9821
JJJJJJJJ{	chr4:174254119-174254323(-)$1	204	23	32	12.0000
{GGGGGGGK	chr17:8396950-8397227(-)$1	277	33	42	16.3750
GGGGGGEEE	chr6:10912805-10913028(+)$1	223	1	10	19.3214
eeeee[ccc	chr22:36699943-36700172(-)$1	229	126	135	14.9464
e[apppppp	chr19:54625151-54625420(+)$1	269	186	195	13.0714
ccmmmmccc	chr9:116170923-116171279(-)$1	356	90	99	12.0892
b[eeeee[a	chr1:36754913-36755198(+)$1	285	93	102	16.3750
2ccccccdd	chr8:124383408-124383629(-)$1	221	84	93	12.5357
c7777777e	chr6:87964829-87965099(+)$1	270	65	74	13.8750
{JJJJJJJJ	chr19:10781727-10781959(+)$1	232	72	81	14.9464
77777ccc]	chr6:129962868-129963160(-)$1	292	265	274	16.8214
b[bb"""a[	chr1:160200993-160201265(-)$1	272	87	96	12.9821
cclllccc]	chr7:135290869-135291074(+)$1	205	95	104	15.0357
mmbba]ddd	chr9:35685647-35685878(-)$1	231	98	107	12.4464
a]ddddfff	chr14:20923971-20924213(+)$1	242	111	120	15.7500
JJJJJJJJJ	chr1:32645869-32646163(+)$1	294	275	284	12.8035
dd]bb4444	chrX:122866705-122866953(-)$1	248	136	145	15.7500
:::::::::	chr2:100019331-100019644(-)$1	313	130	139	12.7142
:eeeeelll	chr11:46811621-46811836(-)$1	215	193	202	12.5357

#DB
..).)).))	chrX:122756894-122757112(-)$1	1	112	121	12.1785
.)))).)))	chr20:55027720-55028026(+)$1	1	291	300	16.8214
((((..(((	chr2:174230106-174230421(+)$1	1	70	79	15.5714
..(.(((((	chr14:103806782-103806999(+)$1	1	59	68	14.1428
)..))))).	chr1:171511064-171511317(+)$1	1	234	243	11.7321
)))).))))	chr15:44109476-44109701(-)$1	1	201	210	16.3750
(....)..)	chrX:70349492-70349726(+)$1	1	73	82	13.3392
..(((((.(	chr7:2257495-2257750(-)$1	1	3	12	12.4464
....(((.(	chr2:71654294-71654547(+)$1	1	9	18	13.2500
))).).)))	chr22:20078865-20079121(+)$1	1	208	217	13.0714
.)))..)))	chr19:10794032-10794306(+)$1	1	134	143	13.2500
)..))))))	chr19:10230269-10230476(-)$1	1	122	131	12.5357
.........	chr12:72037769-72038065(-)$1	1	128	137	16.2857
(((((...(	chr2:97274499-97274812(-)$1	1	8	17	12.9821
(((.(.(((	chr1:154145540-154145765(-)$1	1	81	90	11.7321
..)))))).	chr10:91511042-91511284(+)$1	1	113	122	12.0000
))))..(((	chr7:139796358-139796654(-)$1	1	116	125	14.4107
(........	chr8:103300300-103300530(-)$1	1	84	93	16.2857
).)).))))	chr11:110108203-110108457(-)$1	1	229	238	12.0892
(.......)	chr12:132490612-132490880(+)$1	1	66	75	15.7500
.....(((.	chr2:135920541-135920770(+)$1	1	101	110	16.3750
.((..((((	chr17:49083345-49083579(-)$1	1	117	126	17.4464
........)	chr10:75003475-75003752(-)$1	1	68	77	19.3214
)).)))).)	chr1:229461006-229461258(-)$1	1	123	132	11.4642
)))).....	chr11:129991504-129991741(+)$1	1	133	142	17.4464
)))).))))	chr4:1919949-1920223(+)$1	1	178	187	15.5714
)))..).))	chr4:39870915-39871158(-)$1	1	112	121	13.6964
))))..)))	chr20:62577060-62577293(-)$1	1	75	84	12.9821
((((.....	chr6:116979868-116980107(-)$1	1	84	93	14.8571
.))....))	chr7:72397253-72397600(+)$1	1	201	210	14.4107
..)).))))	chr2:232577051-232577257(+)$1	1	103	112	17.4464
((((.....	chr19:47233888-47234188(-)$1	1	66	75	11.6428
.)))....(	chr1:154525456-154525737(-)$1	1	122	131	17.4464
(((......	chr2:113416391-113416677(+)$1	1	75	84	12.5357
))).)....	chr6:44217927-44218149(+)$1	1	142	151	17.4464
.......))	chr14:102452878-102453140(+)$1	1	111	120	12.4464
.........	chr6:168352130-168352395(+)$1	1	151	160	12.9821
((((((((.	chr4:174254119-174254323(-)$1	1	23	32	12.0000
.(((((((.	chr17:8396950-8397227(-)$1	1	33	42	16.3750
(((((((((	chr6:10912805-10913028(+)$1	1	1	10	19.3214
(((((.(((	chr22:36699943-36700172(-)$1	1	126	135	14.9464
(.(......	chr19:54625151-54625420(+)$1	1	186	195	13.0714
((....)))	chr9:116170923-116171279(-)$1	1	90	99	12.0892
(.(((((.(	chr1:36754913-36755198(+)$1	1	93	102	16.3750
.))))))))	chr8:124383408-124383629(-)$1	1	84	93	12.5357
).......)	chr6:87964829-87965099(+)$1	1	65	74	13.8750
.((((((((	chr19:10781727-10781959(+)$1	1	72	81	14.9464
.....))).	chr6:129962868-129963160(-)$1	1	265	274	16.8214
(.((...(.	chr1:160200993-160201265(-)$1	1	87	96	12.9821
((...))).	chr7:135290869-135291074(+)$1	1	95	104	15.0357
..))).)))	chr9:35685647-35685878(-)$1	1	98	107	12.4464
).)))))))	chr14:20923971-20924213(+)$1	1	111	120	15.7500
)))))))))	chr1:32645869-32646163(+)$1	1	275	284	12.8035
)).))....	chrX:122866705-122866953(-)$1	1	136	145	15.7500
.........	chr2:100019331-100019644(-)$1	1	130	139	12.7142
.(((((...	chr11:46811621-46811836(-)$1	1	193	202	12.5357

#PSSM
C : 0.58	G : 0.19	A : 0.10	U : 0.03	g : 0.03	u : 0.01	c : 0.01	
A : 0.85	U : 0.05	a : 0.05	G : 0.01	c : 0.01	
G : 0.76	A : 0.08	U : 0.07	g : 0.05	a : 0.01	
G : 0.87	g : 0.07	A : 0.05	
A : 0.71	C : 0.12	G : 0.07	a : 0.07	U : 0.01	
A : 0.69	G : 0.17	a : 0.07	U : 0.05	
G : 0.83	g : 0.07	C : 0.05	A : 0.03	
A : 0.85	a : 0.07	U : 0.05	G : 0.01	
G : 0.73	A : 0.16	g : 0.05	U : 0.03	a : 0.01	

#score	804.1428571428573
#seq	56
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_CDS_m2_run2.nuc.txt

#NT
GGGAGCGGUGCG	chr14:96968695-96968950(+)$1	255	95	107	16.8620
UGGGGCAGGGCC	chr19:1012067-1012335(-)$1	268	85	97	16.1724
GCGGGCGGGCCG	chr16:3767366-3767623(-)$1	257	228	240	15.9137
gggggccgggga	chr2:54197795-54198044(-)$1	249	70	82	15.6551
GGCUGCGGGGCC	chr15:91537544-91537831(-)$1	287	247	259	16.8620
GGGGGUGUGGCC	chr8:37756810-37757066(-)$1	256	3	15	17.4655
GGAGGCGGCGCC	chr21:47878917-47879215(+)$1	298	150	162	17.8103
gggggugggggg	chr5:133707165-133707394(+)$1	229	58	70	18.5862
GGCGGCGGGGGC	chr19:39138196-39138519(+)$1	323	255	267	18.0689
GGGGGCGGAGGC	chr3:183602431-183602779(-)$1	348	333	345	18.4137
gggagcggcgcc	chr8:30669827-30670092(-)$1	265	60	72	17.5517
GGGCGAGGGGCU	chr18:43678037-43678293(-)$1	256	240	252	14.8793
GGGGGCCCGGCC	chr1:202976424-202976705(+)$1	281	176	188	16.1724
GUGGGCGGGGCC	chr12:56693895-56694180(-)$1	285	6	18	20.7413
GGGGGCGGGGAA	chr19:6739607-6739900(+)$1	293	11	23	19.1034
GGGGGUGGGGGG	chr5:137688338-137688618(+)$1	280	23	35	18.5862
GGCGGCGGGGCG	chr15:101835271-101835546(-)$1	275	77	89	20.5689
GUGGGCGGAGCC	chr19:18547571-18547847(-)$1	276	65	77	17.5517
GGCGGCGGGACU	chr20:49307563-49307864(-)$1	301	162	174	14.3620
GUGGGCAGGGCC	chr11:67810665-67810942(+)$1	277	48	60	16.6896
GAGAGCGGGGCG	chr19:18548493-18548757(-)$1	264	123	135	16.5172
GGGGGCAGGGCC	chr1:40626956-40627284(+)$1	328	52	64	20.4827
GGGGGUGGGGCA	chr1:109289227-109289509(+)$1	282	20	32	19.9655
GGgggccgggcc	chr19:1605261-1605549(-)$1	288	276	288	20.5689
aggggcggggcc	chr16:30134333-30134598(-)$1	265	6	18	20.3103
GGGAGCGGCGCG	chr19:5719967-5720250(-)$1	283	139	151	17.1206
GCGGGCCGGGCG	chr16:447202-447481(+)$1	279	6	18	16.3448
GGGGGCGGGGCC	chr7:99686488-99686804(+)$1	316	91	103	24.5344
GGGGGCGGGGGG	chr17:55333991-55334261(+)$1	270	92	104	21.1724
GGGGGUGGAGCA	chr22:21348451-21348719(+)$1	268	119	131	16.7758
GGAGGCGGGGAG	chr3:122785815-122786174(+)$1	359	76	88	17.2931
gggggcggcggg	chr16:2587900-2588217(+)$1	317	79	91	17.8103
GGGGGCUGGGGC	chr2:111435459-111435729(-)$1	270	216	228	17.3793
GGGGCCGGAGCG	chr19:12845270-12845568(-)$1	298	47	59	16.4310
gggggcggagcc	chr9:101558621-101558914(-)$1	293	81	93	21.3448
GGGGGUGGUGCC	chrX:77380693-77380954(+)$1	261	198	210	18.3275
GCGGGCGGGACC	chr6:166755853-166756149(-)$1	296	68	80	16.3448
GGAGGUGGGGCA	chr17:57232261-57232556(-)$1	295	120	132	16.6034
GGAGGAGGGGCC	chr12:49524976-49525276(-)$1	300	9	21	17.8965
GAGGGAGGGGCG	chr1:68151561-68151874(+)$1	313	56	68	16.8620
UGUGGCGGGGCC	chr9:15422774-15423066(+)$1	292	251	263	16.6034
GGGGGUGGGGAC	chr11:85779704-85780015(-)$1	311	112	124	18.4999
GGUGGCGGGUCC	chr1:201798183-201798499(+)$1	316	108	120	16.4310
CGGGCCGGGGCG	chr19:49990766-49991003(+)$1	237	149	161	15.2241
GGGAGUGGGGCG	chr5:176981013-176981268(-)$1	255	79	91	17.8965
GGAAGCGGGGCC	chr16:28962291-28962545(+)$1	254	57	69	17.5517
GCGGGCGGAGCG	chr1:231114754-231115043(+)$1	289	107	119	17.1206
aggggcggggcc	chr1:894494-894738(-)$1	244	35	47	20.3103
GGGGGCGGGGAG	chr4:129208779-129209059(-)$1	280	76	88	20.6551
GGGGGCGCGCCG	chr12:56122010-56122239(-)$1	229	200	212	15.3103
GUGGGAGGGGCG	chr10:7830054-7830326(+)$1	272	36	48	17.0344
GGGAGCGAGGCC	chr16:88729360-88729637(-)$1	277	255	267	16.5172
GGGGCCGAGGCC	chr19:5719788-5720057(-)$1	269	77	89	15.6551
ggagguggggcg	chr9:101867328-101867596(+)$1	268	75	87	18.1551
AGGGGCGGAGCC	chr16:75018806-75019087(-)$1	281	2	14	17.1206
GGGGGUGGCGGG	chr17:27224488-27224741(-)$1	253	52	64	15.2241
GGGGGUGGGGGG	chr6:32095846-32096103(-)$1	257	102	114	18.5862

#otherMatches

#Struct PSSM
bb]iiiiiiiii	chr5:131132508-131132810(-)$1	302	122	134	20.4827
bmmmmbb]ccc2	chr14:96968695-96968950(+)$1	255	95	107	16.8620
LLLFFFFFFggg	chr19:1012067-1012335(-)$1	268	85	97	16.1724
EEEEEEEEEEDD	chr16:3767366-3767623(-)$1	257	228	240	15.9137
GG{CCCKKACCC	chr2:54197795-54198044(-)$1	249	70	82	15.6551
ddddmmmmdddd	chr15:91537544-91537831(-)$1	287	247	259	16.8620
[annnnna]ccc	chr8:37756810-37757066(-)$1	256	3	15	17.4655
bb:GGGGGGG}C	chr21:47878917-47879215(+)$1	298	150	162	17.8103
::DDDD{DDDD:	chr5:133707165-133707394(+)$1	229	58	70	18.5862
]cccbb]eeeee	chr19:39138196-39138519(+)$1	323	255	267	18.0689
}JJJJJJJJJJJ	chr3:183602431-183602779(-)$1	348	333	345	18.4137
ammmma22a]cc	chr8:30669827-30670092(-)$1	265	60	72	17.5517
GGGEEEEEEEEE	chr18:43678037-43678293(-)$1	256	240	252	14.8793
B{HHHHHHHHLL	chr1:202976424-202976705(+)$1	281	176	188	16.1724
GGGGGGdddddd	chr12:56693895-56694180(-)$1	285	6	18	20.7413
DDEEEEE{CCC:	chr19:6739607-6739900(+)$1	293	11	23	19.1034
yyyyyyyyyyyy	chr5:137688338-137688618(+)$1	280	23	35	18.5862
[cccoooooocc	chr15:101835271-101835546(-)$1	275	77	89	20.5689
cceeeee22ccc	chr19:18547571-18547847(-)$1	276	65	77	17.5517
nna]dddd22dd	chr20:49307563-49307864(-)$1	301	162	174	14.3620
55==========	chr11:67810665-67810942(+)$1	277	48	60	16.6896
$$$$cccccc!!	chr19:18548493-18548757(-)$1	264	123	135	16.5172
D{EEEEE{DDDD	chr1:40626956-40627284(+)$1	328	52	64	20.4827
{AKKHHHHHHHH	chr1:109289227-109289509(+)$1	282	20	32	19.9655
5eeeee]eeeee	chr19:1605261-1605549(-)$1	288	276	288	20.5689
MBB{EEEEE{BB	chr16:30134333-30134598(-)$1	265	6	18	20.3103
E}AYYFFFFFF}	chr19:5719967-5720250(-)$1	283	139	151	17.1206
========[a%%	chr16:447202-447481(+)$1	279	6	18	16.3448
uuuccc4444cc	chr7:99686488-99686804(+)$1	316	91	103	24.5344
ii]eeeee333e	chr17:55333991-55334261(+)$1	270	92	104	21.1724
IIYYCCC}GGGG	chr22:21348451-21348719(+)$1	268	119	131	16.7758
dd:BB}EEEEEJ	chr3:122785815-122786174(+)$1	359	76	88	17.2931
a[dddd$$$$$c	chr16:2587900-2588217(+)$1	317	79	91	17.8103
DZZZHHHHHHHH	chr2:111435459-111435729(-)$1	270	216	228	17.3793
IIIIIIbbnnnn	chr19:12845270-12845568(-)$1	298	47	59	16.4310
iiiiiii22ddd	chr9:101558621-101558914(-)$1	293	81	93	21.3448
a]gggggggeee	chrX:77380693-77380954(+)$1	261	198	210	18.3275
hh"""a[eeeee	chr6:166755853-166756149(-)$1	296	68	80	16.3448
EEEEEEEECCC{	chr17:57232261-57232556(-)$1	295	120	132	16.6034
HH:hhhhhhhh!	chr12:49524976-49525276(-)$1	300	9	21	17.8965
MMCCC{FFFFFF	chr1:68151561-68151874(+)$1	313	56	68	16.8620
FFFFFFZZZDDD	chr9:15422774-15423066(+)$1	292	251	263	16.6034
2eeeee:ggggg	chr11:85779704-85780015(-)$1	311	112	124	18.4999
lggggggg]eee	chr1:201798183-201798499(+)$1	316	108	120	16.4310
neeeeeIIIIII	chr19:49990766-49991003(+)$1	237	149	161	15.2241
IIIIIII{BB:D	chr5:176981013-176981268(-)$1	255	79	91	17.8965
ddd[a[======	chr16:28962291-28962545(+)$1	254	57	69	17.5517
ffffffoooooo	chr1:231114754-231115043(+)$1	289	107	119	17.1206
JJ::ccc[ccc[	chr1:894494-894738(-)$1	244	35	47	20.3103
==========::	chr4:129208779-129209059(-)$1	280	76	88	20.6551
gggggffffffn	chr12:56122010-56122239(-)$1	229	200	212	15.3103
eeee!!a[ccc[	chr10:7830054-7830326(+)$1	272	36	48	17.0344
}AYYEEEEE}DD	chr16:88729360-88729637(-)$1	277	255	267	16.5172
####iiiiiiii	chr19:5719788-5720057(-)$1	269	77	89	15.6551
[dddd[ffffff	chr9:101867328-101867596(+)$1	268	75	87	18.1551
:DDDD{EEEEE:	chr16:75018806-75019087(-)$1	281	2	14	17.1206
lllffffff]bb	chr17:27224488-27224741(-)$1	253	52	64	15.2241
iiiiiiii:GGG	chr6:32095846-32096103(-)$1	257	102	114	18.5862

#DB
)).)))))))))	chr5:131132508-131132810(-)$1	1	122	134	20.4827
(....)).))).	chr14:96968695-96968950(+)$1	1	95	107	16.8620
...(((((((((	chr19:1012067-1012335(-)$1	1	85	97	16.1724
))))))))))))	chr16:3767366-3767623(-)$1	1	228	240	15.9137
((.(((..((((	chr2:54197795-54198044(-)$1	1	70	82	15.6551
((((....))))	chr15:91537544-91537831(-)$1	1	247	259	16.8620
.(.....).)))	chr8:37756810-37757066(-)$1	1	3	15	17.4655
)).))))))).)	chr21:47878917-47879215(+)$1	1	150	162	17.8103
..((((.((((.	chr5:133707165-133707394(+)$1	1	58	70	18.5862
.))))).)))))	chr19:39138196-39138519(+)$1	1	255	267	18.0689
.)))))))))))	chr3:183602431-183602779(-)$1	1	333	345	18.4137
(....)..).))	chr8:30669827-30670092(-)$1	1	60	72	17.5517
))))))))))))	chr18:43678037-43678293(-)$1	1	240	252	14.8793
(.((((((((..	chr1:202976424-202976705(+)$1	1	176	188	16.1724
((((((((((((	chr12:56693895-56694180(-)$1	1	6	18	20.7413
(((((((.(((.	chr19:6739607-6739900(+)$1	1	11	23	19.1034
............	chr5:137688338-137688618(+)$1	1	23	35	18.5862
.(((......))	chr15:101835271-101835546(-)$1	1	77	89	20.5689
)))))))..)))	chr19:18547571-18547847(-)$1	1	65	77	17.5517
..).))))..))	chr20:49307563-49307864(-)$1	1	162	174	14.3620
..))))))))))	chr11:67810665-67810942(+)$1	1	48	60	16.6896
....((((((..	chr19:18548493-18548757(-)$1	1	123	135	16.5172
(.(((((.((((	chr1:40626956-40627284(+)$1	1	52	64	20.4827
.(..((((((((	chr1:109289227-109289509(+)$1	1	20	32	19.9655
.))))).)))))	chr19:1605261-1605549(-)$1	1	276	288	20.5689
.((.(((((.((	chr16:30134333-30134598(-)$1	1	6	18	20.3103
).)..)))))).	chr19:5719967-5720250(-)$1	1	139	151	17.1206
((((((((.(..	chr16:447202-447481(+)$1	1	6	18	16.3448
...)))....))	chr7:99686488-99686804(+)$1	1	91	103	24.5344
)).)))))...)	chr17:55333991-55334261(+)$1	1	92	104	21.1724
))..))).))))	chr22:21348451-21348719(+)$1	1	119	131	16.7758
)).)).))))))	chr3:122785815-122786174(+)$1	1	76	88	17.2931
(.((((.....(	chr16:2587900-2588217(+)$1	1	79	91	17.8103
)...))))))))	chr2:111435459-111435729(-)$1	1	216	228	17.3793
((((((((....	chr19:12845270-12845568(-)$1	1	47	59	16.4310
)))))))..)))	chr9:101558621-101558914(-)$1	1	81	93	21.3448
).)))))))(((	chrX:77380693-77380954(+)$1	1	198	210	18.3275
((...(.(((((	chr6:166755853-166756149(-)$1	1	68	80	16.3448
(((((((((((.	chr17:57232261-57232556(-)$1	1	120	132	16.6034
((.((((((((.	chr12:49524976-49525276(-)$1	1	9	21	17.8965
..(((.((((((	chr1:68151561-68151874(+)$1	1	56	68	16.8620
))))))...)))	chr9:15422774-15423066(+)$1	1	251	263	16.6034
.))))).(((((	chr11:85779704-85780015(-)$1	1	112	124	18.4999
.))))))).)))	chr1:201798183-201798499(+)$1	1	108	120	16.4310
.)))))))))))	chr19:49990766-49991003(+)$1	1	149	161	15.2241
(((((((.((.(	chr5:176981013-176981268(-)$1	1	79	91	17.8965
(((.(.((((((	chr16:28962291-28962545(+)$1	1	57	69	17.5517
((((((......	chr1:231114754-231115043(+)$1	1	107	119	17.1206
((..(((.(((.	chr1:894494-894738(-)$1	1	35	47	20.3103
))))))))))..	chr4:129208779-129209059(-)$1	1	76	88	20.6551
)))))((((((.	chr12:56122010-56122239(-)$1	1	200	212	15.3103
((((..(.(((.	chr10:7830054-7830326(+)$1	1	36	48	17.0344
.)..))))).))	chr16:88729360-88729637(-)$1	1	255	267	16.5172
....((((((((	chr19:5719788-5720057(-)$1	1	77	89	15.6551
.((((.((((((	chr9:101867328-101867596(+)$1	1	75	87	18.1551
.((((.(((((.	chr16:75018806-75019087(-)$1	1	2	14	17.1206
...)))))).))	chr17:27224488-27224741(-)$1	1	52	64	15.2241
)))))))).(((	chr6:32095846-32096103(-)$1	1	102	114	18.5862

#PSSM
G : 0.79	g : 0.10	U : 0.03	a : 0.03	C : 0.01	A : 0.01	
G : 0.68	g : 0.13	C : 0.06	U : 0.06	A : 0.03	
G : 0.63	g : 0.13	A : 0.08	C : 0.06	U : 0.05	a : 0.01	
G : 0.70	g : 0.13	A : 0.10	U : 0.01	a : 0.01	C : 0.01	
G : 0.79	g : 0.15	C : 0.05	
C : 0.60	U : 0.17	c : 0.12	A : 0.06	u : 0.03	
G : 0.74	g : 0.12	A : 0.05	c : 0.03	C : 0.03	U : 0.01	
G : 0.75	g : 0.15	C : 0.03	A : 0.03	U : 0.01	
G : 0.65	g : 0.10	A : 0.10	C : 0.05	U : 0.03	c : 0.03	a : 0.01	
G : 0.75	g : 0.15	C : 0.03	A : 0.03	U : 0.01	
C : 0.65	G : 0.12	c : 0.10	A : 0.06	g : 0.05	
C : 0.39	G : 0.34	c : 0.08	A : 0.06	g : 0.05	U : 0.03	a : 0.01	

#score	1032.4827586206895
#seq	58
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_transcript_m2_run2.nuc.txt

#NT
ugug	chrX:53199654-53199931(+)$1	277	32	36	11.9999
UGUG	chr12:123994418-123994684(-)$1	266	24	28	11.9999
UGUG	chr9:134373547-134373786(+)$1	239	170	174	11.9999
UGUG	chr4:1810373-1810610(+)$1	237	229	233	11.9999
ugug	chr20:30153419-30153680(+)$1	261	115	119	11.9999
UGUG	chr1:234742587-234742823(-)$1	236	89	93	11.9999
UGUG	chr13:33091761-33092022(-)$1	261	63	67	11.9999
UGUG	chr3:49721307-49721580(-)$1	273	77	81	11.9999
UGUG	chr15:34819330-34819573(-)$1	243	227	231	11.9999
UGUG	chr10:300353-300620(+)$1	267	109	113	11.9999
UGUG	chr2:42990383-42990595(-)$1	212	91	95	11.9999
UGUG	chr4:110661836-110662079(-)$1	243	34	38	11.9999
UGUG	chr2:220074112-220074390(+)$1	278	32	36	11.9999
UGUG	chr14:75548810-75549104(-)$1	294	288	292	11.9999
UGUG	chr3:140698365-140698617(+)$1	252	181	185	11.9999
UGUG	chr12:56119526-56119783(-)$1	257	85	89	11.9999
ugug	chr16:80295832-80296104(-)$1	272	253	257	11.9999
ugug	chr7:100738556-100738872(+)$1	316	52	56	11.9999
UGUG	chr20:57253795-57254039(+)$1	244	130	134	11.9999
UGUG	chr3:167726792-167727036(-)$1	244	52	56	11.9999
UGUG	chr3:9519598-9519847(+)$1	249	41	45	11.9999
UGUG	chr15:101844080-101844391(-)$1	311	143	147	11.9999
UGUG	chr6:167455700-167455989(+)$1	289	19	23	11.9999
UGUG	chr1:8412461-8412711(-)$1	250	171	175	11.9999
UGUG	chr2:74652928-74653159(-)$1	231	111	115	11.9999
UGUG	chr2:198256611-198256888(-)$1	277	136	140	11.9999
UGUG	chr1:206906351-206906597(+)$1	246	59	63	11.9999
UGUG	chr11:65203234-65203456(+)$1	222	151	155	11.9999
UGUG	chr14:24029363-24029601(-)$1	238	128	132	11.9999
UGUG	chr6:5109453-5109799(-)$1	346	52	56	11.9999
UGUG	chr11:62370238-62370537(-)$1	299	168	172	11.9999
UGUG	chr11:65194611-65194823(+)$1	212	55	59	11.9999
UGUG	chr2:20786214-20786476(-)$1	262	25	29	11.9999
UGUG	chr16:4853164-4853435(-)$1	271	0	4	11.9999
UGUG	chr17:165313-165583(-)$1	270	41	45	11.9999
UGUG	chr1:19401090-19401381(-)$1	291	123	127	11.9999
UGUG	chr11:2965989-2966248(-)$1	259	53	57	11.9999
UGUG	chr16:27375237-27375511(+)$1	274	205	209	11.9999
UGUG	chr15:34672850-34673106(-)$1	256	13	17	11.9999
UGUG	chrX:41209280-41209533(+)$1	253	130	134	11.9999
UGUG	chr3:123632507-123632750(-)$1	243	86	90	11.9999
UGUG	chr12:131625771-131626089(+)$1	318	191	195	11.9999
UGUG	chr2:182795182-182795479(+)$1	297	40	44	11.9999
UGUG	chr1:1322448-1322698(-)$1	250	183	187	11.9999
UGUG	chr5:118877766-118878074(+)$1	308	202	206	11.9999
UGUG	chr16:67918058-67918308(+)$1	250	151	155	11.9999
UGUG	chr22:22051574-22051845(+)$1	271	33	37	11.9999
UGUG	chr11:727496-727767(+)$1	271	137	141	11.9999
UGUG	chr2:85825946-85826227(-)$1	281	178	182	11.9999
UGUG	chr2:191557192-191557485(+)$1	293	65	69	11.9999
UGUG	chr11:727332-727669(+)$1	337	301	305	11.9999
UGUG	chrX:132669789-132670005(-)$1	216	101	105	11.9999
UGUG	chrX:18911348-18911584(-)$1	236	67	71	11.9999
UGUG	chr5:52782771-52783017(+)$1	246	113	117	11.9999
ugug	chr7:158258732-158258996(-)$1	264	4	8	11.9999
UGUG	chr2:153512282-153512539(-)$1	257	147	151	11.9999
UGUG	chr19:2273160-2273399(+)$1	239	109	113	11.9999
UGUG	chr4:17609318-17609592(+)$1	274	199	203	11.9999
UGUG	chr3:49067122-49067396(-)$1	274	138	142	11.9999
UGUG	chr11:65194703-65194911(+)$1	208	41	45	11.9999
ugug	chr6:30893994-30894309(+)$1	315	88	92	11.9999
UGUG	chr1:25568763-25569047(-)$1	284	67	71	11.9999
UGUG	chr11:45950379-45950717(+)$1	338	135	139	11.9999
UGUG	chr13:22066752-22067040(-)$1	288	235	239	11.9999
UGUG	chrY:15032205-15032466(+)$1	261	138	142	11.9999
UGUG	chr9:131152640-131152898(+)$1	258	137	141	11.9999
UGUG	chr20:33867346-33867605(-)$1	259	63	67	11.9999
UGUG	chr16:30003325-30003626(+)$1	301	65	69	11.9999
UGUG	chrX:18912252-18912495(-)$1	243	232	236	11.9999
UGUG	chr15:85682040-85682376(+)$1	336	281	285	11.9999
UGUG	chr19:941188-941403(+)$1	215	62	66	11.9999
UGUG	chr3:52526511-52526817(+)$1	306	50	54	11.9999
UGUG	chr14:21464963-21465249(+)$1	286	28	32	11.9999
UGUG	chr20:34292162-34292429(-)$1	267	187	191	11.9999
UGUG	chr11:65194737-65194944(+)$1	207	7	11	11.9999
UGUG	chr5:43291855-43292116(-)$1	261	103	107	11.9999
UGUG	chr12:120565198-120565470(-)$1	272	15	19	11.9999
UGUG	chr1:1322401-1322648(-)$1	247	133	137	11.9999
UGUG	chr6:351157-351426(+)$1	269	11	15	11.9999
UGUG	chr15:34819532-34819781(-)$1	249	67	71	11.9999
UGUG	chr12:123997904-123998168(-)$1	264	4	8	11.9999
UGUG	chr10:101611352-101611593(+)$1	241	14	18	11.9999
UGUG	chr3:51426497-51426816(+)$1	319	136	140	11.9999
UGUG	chr6:31321589-31321842(-)$1	253	207	211	11.9999
UGUG	chr9:117071608-117071858(+)$1	250	28	32	11.9999
UGUG	chr3:78963515-78963828(-)$1	313	104	108	11.9999
UGUG	chr6:134490429-134490718(-)$1	289	278	282	11.9999

#otherMatches

#Struct PSSM
444d	chr20:60756795-60757033(+)$1	238	74	78	11.9999
nncc	chrX:53199654-53199931(+)$1	277	32	36	11.9999
"ccc	chr12:123994418-123994684(-)$1	266	24	28	11.9999
fccc	chr9:134373547-134373786(+)$1	239	170	174	11.9999
ffff	chr4:1810373-1810610(+)$1	237	229	233	11.9999
bb]b	chr20:30153419-30153680(+)$1	261	115	119	11.9999
gggg	chr1:234742587-234742823(-)$1	236	89	93	11.9999
[ddd	chr13:33091761-33092022(-)$1	261	63	67	11.9999
bb!!	chr3:49721307-49721580(-)$1	273	77	81	11.9999
oa]b	chr15:34819330-34819573(-)$1	243	227	231	11.9999
dddd	chr10:300353-300620(+)$1	267	109	113	11.9999
2ccc	chr2:42990383-42990595(-)$1	212	91	95	11.9999
eee:	chr4:110661836-110662079(-)$1	243	34	38	11.9999
eooo	chr2:220074112-220074390(+)$1	278	32	36	11.9999
HHHH	chr14:75548810-75549104(-)$1	294	288	292	11.9999
fff]	chr3:140698365-140698617(+)$1	252	181	185	11.9999
e22c	chr12:56119526-56119783(-)$1	257	85	89	11.9999
Dddd	chr16:80295832-80296104(-)$1	272	253	257	11.9999
na]b	chr7:100738556-100738872(+)$1	316	52	56	11.9999
CKKD	chr20:57253795-57254039(+)$1	244	130	134	11.9999
pppp	chr3:167726792-167727036(-)$1	244	52	56	11.9999
gggm	chr3:9519598-9519847(+)$1	249	41	45	11.9999
::::	chr15:101844080-101844391(-)$1	311	143	147	11.9999
GGGG	chr6:167455700-167455989(+)$1	289	19	23	11.9999
ffff	chr1:8412461-8412711(-)$1	250	171	175	11.9999
dddd	chr2:74652928-74653159(-)$1	231	111	115	11.9999
efff	chr2:198256611-198256888(-)$1	277	136	140	11.9999
ffff	chr1:206906351-206906597(+)$1	246	59	63	11.9999
!!cc	chr11:65203234-65203456(+)$1	222	151	155	11.9999
=[bb	chr14:24029363-24029601(-)$1	238	128	132	11.9999
bb[f	chr6:5109453-5109799(-)$1	346	52	56	11.9999
dooo	chr11:62370238-62370537(-)$1	299	168	172	11.9999
^^^^	chr11:65194611-65194823(+)$1	212	55	59	11.9999
{GGG	chr2:20786214-20786476(-)$1	262	25	29	11.9999
::::	chr16:4853164-4853435(-)$1	271	0	4	11.9999
c[a[	chr17:165313-165583(-)$1	270	41	45	11.9999
ddnn	chr1:19401090-19401381(-)$1	291	123	127	11.9999
GGGF	chr11:2965989-2966248(-)$1	259	53	57	11.9999
ggmm	chr16:27375237-27375511(+)$1	274	205	209	11.9999
{CCC	chr15:34672850-34673106(-)$1	256	13	17	11.9999
nfff	chrX:41209280-41209533(+)$1	253	130	134	11.9999
ff]d	chr3:123632507-123632750(-)$1	243	86	90	11.9999
2bb]	chr12:131625771-131626089(+)$1	318	191	195	11.9999
hhhr	chr2:182795182-182795479(+)$1	297	40	44	11.9999
EE}F	chr1:1322448-1322698(-)$1	250	183	187	11.9999
ggg[	chr5:118877766-118878074(+)$1	308	202	206	11.9999
[bb[	chr16:67918058-67918308(+)$1	250	151	155	11.9999
eee5	chr22:22051574-22051845(+)$1	271	33	37	11.9999
f!!=	chr11:727496-727767(+)$1	271	137	141	11.9999
:DDD	chr2:85825946-85826227(-)$1	281	178	182	11.9999
geee	chr2:191557192-191557485(+)$1	293	65	69	11.9999
FFFF	chr11:727332-727669(+)$1	337	301	305	11.9999
"""g	chrX:132669789-132670005(-)$1	216	101	105	11.9999
ddoo	chrX:18911348-18911584(-)$1	236	67	71	11.9999
mmdd	chr5:52782771-52783017(+)$1	246	113	117	11.9999
FFFF	chr7:158258732-158258996(-)$1	264	4	8	11.9999
====	chr2:153512282-153512539(-)$1	257	147	151	11.9999
$$ff	chr19:2273160-2273399(+)$1	239	109	113	11.9999
eee[	chr4:17609318-17609592(+)$1	274	199	203	11.9999
oood	chr3:49067122-49067396(-)$1	274	138	142	11.9999
booo	chr11:65194703-65194911(+)$1	208	41	45	11.9999
mmmd	chr6:30893994-30894309(+)$1	315	88	92	11.9999
JJJJ	chr1:25568763-25569047(-)$1	284	67	71	11.9999
MMJJ	chr11:45950379-45950717(+)$1	338	135	139	11.9999
####	chr13:22066752-22067040(-)$1	288	235	239	11.9999
neee	chrY:15032205-15032466(+)$1	261	138	142	11.9999
DDDD	chr9:131152640-131152898(+)$1	258	137	141	11.9999
ddd3	chr20:33867346-33867605(-)$1	259	63	67	11.9999
fff[	chr16:30003325-30003626(+)$1	301	65	69	11.9999
JJJJ	chrX:18912252-18912495(-)$1	243	232	236	11.9999
hhhh	chr15:85682040-85682376(+)$1	336	281	285	11.9999
ddmm	chr19:941188-941403(+)$1	215	62	66	11.9999
:DDD	chr3:52526511-52526817(+)$1	306	50	54	11.9999
IIII	chr14:21464963-21465249(+)$1	286	28	32	11.9999
llcc	chr20:34292162-34292429(-)$1	267	187	191	11.9999
DDDC	chr11:65194737-65194944(+)$1	207	7	11	11.9999
c]a]	chr5:43291855-43292116(-)$1	261	103	107	11.9999
lllg	chr12:120565198-120565470(-)$1	272	15	19	11.9999
ffff	chr1:1322401-1322648(-)$1	247	133	137	11.9999
:bb!	chr6:351157-351426(+)$1	269	11	15	11.9999
uccc	chr15:34819532-34819781(-)$1	249	67	71	11.9999
dddd	chr12:123997904-123998168(-)$1	264	4	8	11.9999
dddd	chr10:101611352-101611593(+)$1	241	14	18	11.9999
[a[d	chr3:51426497-51426816(+)$1	319	136	140	11.9999
pddd	chr6:31321589-31321842(-)$1	253	207	211	11.9999
#a[c	chr9:117071608-117071858(+)$1	250	28	32	11.9999
{EEE	chr3:78963515-78963828(-)$1	313	104	108	11.9999
pahh	chr6:134490429-134490718(-)$1	289	278	282	11.9999

#DB
...)	chr20:60756795-60757033(+)$1	1	74	78	11.9999
..))	chrX:53199654-53199931(+)$1	1	32	36	11.9999
.(((	chr12:123994418-123994684(-)$1	1	24	28	11.9999
))))	chr9:134373547-134373786(+)$1	1	170	174	11.9999
))))	chr4:1810373-1810610(+)$1	1	229	233	11.9999
)).)	chr20:30153419-30153680(+)$1	1	115	119	11.9999
))))	chr1:234742587-234742823(-)$1	1	89	93	11.9999
.(((	chr13:33091761-33092022(-)$1	1	63	67	11.9999
((..	chr3:49721307-49721580(-)$1	1	77	81	11.9999
.).)	chr15:34819330-34819573(-)$1	1	227	231	11.9999
))))	chr10:300353-300620(+)$1	1	109	113	11.9999
.)))	chr2:42990383-42990595(-)$1	1	91	95	11.9999
))).	chr4:110661836-110662079(-)$1	1	34	38	11.9999
(...	chr2:220074112-220074390(+)$1	1	32	36	11.9999
))))	chr14:75548810-75549104(-)$1	1	288	292	11.9999
))).	chr3:140698365-140698617(+)$1	1	181	185	11.9999
)..)	chr12:56119526-56119783(-)$1	1	85	89	11.9999
)(((	chr16:80295832-80296104(-)$1	1	253	257	11.9999
.).)	chr7:100738556-100738872(+)$1	1	52	56	11.9999
(..(	chr20:57253795-57254039(+)$1	1	130	134	11.9999
....	chr3:167726792-167727036(-)$1	1	52	56	11.9999
(((.	chr3:9519598-9519847(+)$1	1	41	45	11.9999
....	chr15:101844080-101844391(-)$1	1	143	147	11.9999
((((	chr6:167455700-167455989(+)$1	1	19	23	11.9999
))))	chr1:8412461-8412711(-)$1	1	171	175	11.9999
((((	chr2:74652928-74653159(-)$1	1	111	115	11.9999
)(((	chr2:198256611-198256888(-)$1	1	136	140	11.9999
((((	chr1:206906351-206906597(+)$1	1	59	63	11.9999
..((	chr11:65203234-65203456(+)$1	1	151	155	11.9999
(.((	chr14:24029363-24029601(-)$1	1	128	132	11.9999
((.(	chr6:5109453-5109799(-)$1	1	52	56	11.9999
(...	chr11:62370238-62370537(-)$1	1	168	172	11.9999
....	chr11:65194611-65194823(+)$1	1	55	59	11.9999
.(((	chr2:20786214-20786476(-)$1	1	25	29	11.9999
....	chr16:4853164-4853435(-)$1	1	0	4	11.9999
(.(.	chr17:165313-165583(-)$1	1	41	45	11.9999
((..	chr1:19401090-19401381(-)$1	1	123	127	11.9999
((((	chr11:2965989-2966248(-)$1	1	53	57	11.9999
((..	chr16:27375237-27375511(+)$1	1	205	209	11.9999
.(((	chr15:34672850-34673106(-)$1	1	13	17	11.9999
.)))	chrX:41209280-41209533(+)$1	1	130	134	11.9999
)).)	chr3:123632507-123632750(-)$1	1	86	90	11.9999
.)).	chr12:131625771-131626089(+)$1	1	191	195	11.9999
(((.	chr2:182795182-182795479(+)$1	1	40	44	11.9999
)).)	chr1:1322448-1322698(-)$1	1	183	187	11.9999
(((.	chr5:118877766-118878074(+)$1	1	202	206	11.9999
.((.	chr16:67918058-67918308(+)$1	1	151	155	11.9999
))).	chr22:22051574-22051845(+)$1	1	33	37	11.9999
(..(	chr11:727496-727767(+)$1	1	137	141	11.9999
.)))	chr2:85825946-85826227(-)$1	1	178	182	11.9999
)(((	chr2:191557192-191557485(+)$1	1	65	69	11.9999
))))	chr11:727332-727669(+)$1	1	301	305	11.9999
...(	chrX:132669789-132670005(-)$1	1	101	105	11.9999
((..	chrX:18911348-18911584(-)$1	1	67	71	11.9999
..))	chr5:52782771-52783017(+)$1	1	113	117	11.9999
((((	chr7:158258732-158258996(-)$1	1	4	8	11.9999
))))	chr2:153512282-153512539(-)$1	1	147	151	11.9999
..((	chr19:2273160-2273399(+)$1	1	109	113	11.9999
(((.	chr4:17609318-17609592(+)$1	1	199	203	11.9999
...)	chr3:49067122-49067396(-)$1	1	138	142	11.9999
(...	chr11:65194703-65194911(+)$1	1	41	45	11.9999
...)	chr6:30893994-30894309(+)$1	1	88	92	11.9999
((((	chr1:25568763-25569047(-)$1	1	67	71	11.9999
..((	chr11:45950379-45950717(+)$1	1	135	139	11.9999
....	chr13:22066752-22067040(-)$1	1	235	239	11.9999
.)))	chrY:15032205-15032466(+)$1	1	138	142	11.9999
))))	chr9:131152640-131152898(+)$1	1	137	141	11.9999
))).	chr20:33867346-33867605(-)$1	1	63	67	11.9999
(((.	chr16:30003325-30003626(+)$1	1	65	69	11.9999
))))	chrX:18912252-18912495(-)$1	1	232	236	11.9999
))))	chr15:85682040-85682376(+)$1	1	281	285	11.9999
((..	chr19:941188-941403(+)$1	1	62	66	11.9999
.(((	chr3:52526511-52526817(+)$1	1	50	54	11.9999
((((	chr14:21464963-21465249(+)$1	1	28	32	11.9999
..))	chr20:34292162-34292429(-)$1	1	187	191	11.9999
((((	chr11:65194737-65194944(+)$1	1	7	11	11.9999
).).	chr5:43291855-43292116(-)$1	1	103	107	11.9999
...)	chr12:120565198-120565470(-)$1	1	15	19	11.9999
((((	chr1:1322401-1322648(-)$1	1	133	137	11.9999
.((.	chr6:351157-351426(+)$1	1	11	15	11.9999
.)))	chr15:34819532-34819781(-)$1	1	67	71	11.9999
((((	chr12:123997904-123998168(-)$1	1	4	8	11.9999
((((	chr10:101611352-101611593(+)$1	1	14	18	11.9999
.(.(	chr3:51426497-51426816(+)$1	1	136	140	11.9999
.)))	chr6:31321589-31321842(-)$1	1	207	211	11.9999
.(.(	chr9:117071608-117071858(+)$1	1	28	32	11.9999
.(((	chr3:78963515-78963828(-)$1	1	104	108	11.9999
.)))	chr6:134490429-134490718(-)$1	1	278	282	11.9999

#PSSM
U : 0.93	u : 0.06	
G : 0.93	g : 0.06	
U : 0.93	u : 0.06	
G : 0.93	g : 0.06	

#score	1055.9999999999998
#seq	88
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_transcript_m1_run1.nuc.txt

#NT
CUGGA	chr15:80215398-80215658(-)$1	260	133	138	15.0000
CUGGA	chr21:34923257-34923493(+)$1	236	23	28	15.0000
CUGGA	chr2:238499125-238499370(-)$1	245	161	166	15.0000
CUGGA	chr14:23451073-23451287(-)$1	214	19	24	15.0000
CUGGA	chr22:39917807-39918066(+)$1	259	56	61	15.0000
CUGGA	chr1:8074101-8074345(-)$1	244	176	181	15.0000
cugga	chr14:24105758-24105966(+)$1	208	1	6	15.0000
CUGGA	chr8:121823799-121824101(-)$1	302	93	98	15.0000
CUGGA	chr20:377273-377510(+)$1	237	7	12	15.0000
CUGGA	chr3:32932822-32933083(+)$1	261	102	107	15.0000
CUGGA	chr2:208633213-208633430(-)$1	217	159	164	15.0000
CUGGA	chr10:45472794-45473041(-)$1	247	93	98	15.0000
CUGGA	chr10:97380755-97380992(-)$1	237	133	138	15.0000
CUGGA	chr21:34923312-34923541(+)$1	229	40	45	15.0000
CUGGA	chr7:150935333-150935605(+)$1	272	209	214	15.0000
CUGGA	chr19:18977954-18978247(+)$1	293	51	56	15.0000
CUGGA	chr6:32940421-32940665(+)$1	244	130	135	15.0000
CUGGA	chr1:151259158-151259407(+)$1	249	52	57	15.0000
CUGGA	chr21:34923341-34923574(+)$1	233	11	16	15.0000
CUGGA	chr8:40011518-40011762(+)$1	244	0	5	15.0000
CUGGA	chr10:102743360-102743596(+)$1	236	214	219	15.0000
CUGGA	chr10:74034723-74034964(+)$1	241	64	69	15.0000
CUGGA	chr20:62679938-62680215(-)$1	277	43	48	15.0000
CUGGA	chr3:184096045-184096352(+)$1	307	15	20	15.0000
CUGGA	chr11:821223-821471(+)$1	248	66	71	15.0000
CUGGA	chr18:30350392-30350634(+)$1	242	154	159	15.0000
CUGGA	chr12:49443935-49444186(-)$1	251	149	154	15.0000
CUGGA	chr10:75551957-75552200(+)$1	243	179	184	15.0000
CUGGA	chr6:7542327-7542585(+)$1	258	54	59	15.0000
CUGGA	chr20:43058426-43058713(+)$1	287	66	71	15.0000
CUGGA	chr6:142630661-142630894(+)$1	233	143	148	15.0000
CUGGA	chr6:11190706-11190967(-)$1	261	75	80	15.0000
CUGGA	chr9:115422190-115422435(+)$1	245	78	83	15.0000
CUGGA	chr12:76425043-76425325(-)$1	282	177	182	15.0000
CUGGA	chr19:33792093-33792386(-)$1	293	8	13	15.0000
CUGGA	chr12:89745236-89745490(-)$1	254	67	72	15.0000
CUGGA	chr17:18167813-18168049(+)$1	236	112	117	15.0000
CUGGA	chr20:419185-419438(-)$1	253	167	172	15.0000
CUGGA	chr14:50360496-50360744(+)$1	248	18	23	15.0000
CUGGA	chr7:150068936-150069173(+)$1	237	3	8	15.0000
CUGGA	chr20:56140528-56140805(+)$1	277	71	76	15.0000
CUGGA	chr7:150934916-150935149(+)$1	233	74	79	15.0000
CUGGA	chr16:22337050-22337308(+)$1	258	105	110	15.0000
CUGGA	chr14:23537139-23537388(-)$1	249	165	170	15.0000
CUGGA	chr2:238483279-238483521(-)$1	242	122	127	15.0000
CUGGA	chr16:71961810-71962076(+)$1	266	250	255	15.0000
CUGGA	chr20:61833796-61834053(-)$1	257	22	27	15.0000
CUGGA	chr1:16475151-16475369(-)$1	218	55	60	15.0000
CUGGA	chr6:32940062-32940285(+)$1	223	89	94	15.0000
CUGGA	chr2:220082882-220083115(-)$1	233	56	61	15.0000
CUGGA	chr2:202003091-202003361(+)$1	270	121	126	15.0000
CUGGA	chr17:53345122-53345448(+)$1	326	21	26	15.0000
CUGGA	chr19:18499159-18499361(+)$1	202	196	201	15.0000
CUGGA	chr7:73096571-73096876(-)$1	305	65	70	15.0000
CUGGA	chr14:54417196-54417432(-)$1	236	53	58	15.0000
CUGGA	chr17:74372660-74372899(+)$1	239	18	23	15.0000
CUGGA	chr9:124534837-124535085(+)$1	248	238	243	15.0000

#otherMatches

#Struct PSSM
!a[dd	chr16:89629412-89629651(+)$1	239	189	194	15.0000
cc444	chr15:80215398-80215658(-)$1	260	133	138	15.0000
FFLLL	chr21:34923257-34923493(+)$1	236	23	28	15.0000
a]bb2	chr2:238499125-238499370(-)$1	245	161	166	15.0000
a[ccc	chr14:23451073-23451287(-)$1	214	19	24	15.0000
DDDDP	chr22:39917807-39918066(+)$1	259	56	61	15.0000
ppbb]	chr1:8074101-8074345(-)$1	244	176	181	15.0000
:cccn	chr14:24105758-24105966(+)$1	208	1	6	15.0000
{CCCK	chr8:121823799-121824101(-)$1	302	93	98	15.0000
FFFFF	chr20:377273-377510(+)$1	237	7	12	15.0000
dd]ee	chr3:32932822-32933083(+)$1	261	102	107	15.0000
[dddd	chr2:208633213-208633430(-)$1	217	159	164	15.0000
EEEE:	chr10:45472794-45473041(-)$1	247	93	98	15.0000
ccooo	chr10:97380755-97380992(-)$1	237	133	138	15.0000
BBggg	chr21:34923312-34923541(+)$1	229	40	45	15.0000
fff!!	chr7:150935333-150935605(+)$1	272	209	214	15.0000
=====	chr19:18977954-18978247(+)$1	293	51	56	15.0000
3ccc]	chr6:32940421-32940665(+)$1	244	130	135	15.0000
$$bb!	chr1:151259158-151259407(+)$1	249	52	57	15.0000
dddd:	chr21:34923341-34923574(+)$1	233	11	16	15.0000
:::::	chr8:40011518-40011762(+)$1	244	0	5	15.0000
ddmmm	chr10:102743360-102743596(+)$1	236	214	219	15.0000
dddd]	chr10:74034723-74034964(+)$1	241	64	69	15.0000
c[ddd	chr20:62679938-62680215(-)$1	277	43	48	15.0000
D{BB{	chr3:184096045-184096352(+)$1	307	15	20	15.0000
{CCCH	chr11:821223-821471(+)$1	248	66	71	15.0000
ee]a]	chr18:30350392-30350634(+)$1	242	154	159	15.0000
!!ccc	chr12:49443935-49444186(-)$1	251	149	154	15.0000
f4444	chr10:75551957-75552200(+)$1	243	179	184	15.0000
ooeee	chr6:7542327-7542585(+)$1	258	54	59	15.0000
ccbb:	chr20:43058426-43058713(+)$1	287	66	71	15.0000
ddeee	chr6:142630661-142630894(+)$1	233	143	148	15.0000
eeeee	chr6:11190706-11190967(-)$1	261	75	80	15.0000
b[ann	chr9:115422190-115422435(+)$1	245	78	83	15.0000
ffff2	chr12:76425043-76425325(-)$1	282	177	182	15.0000
B{EEE	chr19:33792093-33792386(-)$1	293	8	13	15.0000
eelll	chr12:89745236-89745490(-)$1	254	67	72	15.0000
JJJJJ	chr17:18167813-18168049(+)$1	236	112	117	15.0000
ccc55	chr20:419185-419438(-)$1	253	167	172	15.0000
bCCC{	chr14:50360496-50360744(+)$1	248	18	23	15.0000
DDDD{	chr7:150068936-150069173(+)$1	237	3	8	15.0000
ggggg	chr20:56140528-56140805(+)$1	277	71	76	15.0000
ggggg	chr7:150934916-150935149(+)$1	233	74	79	15.0000
hhh[c	chr16:22337050-22337308(+)$1	258	105	110	15.0000
mffff	chr14:23537139-23537388(-)$1	249	165	170	15.0000
ccc!!	chr2:238483279-238483521(-)$1	242	122	127	15.0000
]ccc:	chr16:71961810-71962076(+)$1	266	250	255	15.0000
ceeee	chr20:61833796-61834053(-)$1	257	22	27	15.0000
pppdd	chr1:16475151-16475369(-)$1	218	55	60	15.0000
dddd]	chr6:32940062-32940285(+)$1	223	89	94	15.0000
ggggr	chr2:220082882-220083115(-)$1	233	56	61	15.0000
HHHHH	chr2:202003091-202003361(+)$1	270	121	126	15.0000
HHHH{	chr17:53345122-53345448(+)$1	326	21	26	15.0000
ddd::	chr19:18499159-18499361(+)$1	202	196	201	15.0000
ggggg	chr7:73096571-73096876(-)$1	305	65	70	15.0000
cccDD	chr14:54417196-54417432(-)$1	236	53	58	15.0000
LLLBB	chr17:74372660-74372899(+)$1	239	18	23	15.0000
YYCCC	chr9:124534837-124535085(+)$1	248	238	243	15.0000

#DB
.(.((	chr16:89629412-89629651(+)$1	1	189	194	15.0000
))...	chr15:80215398-80215658(-)$1	1	133	138	15.0000
((...	chr21:34923257-34923493(+)$1	1	23	28	15.0000
).)).	chr2:238499125-238499370(-)$1	1	161	166	15.0000
(.(((	chr14:23451073-23451287(-)$1	1	19	24	15.0000
((((.	chr22:39917807-39918066(+)$1	1	56	61	15.0000
..)).	chr1:8074101-8074345(-)$1	1	176	181	15.0000
.(((.	chr14:24105758-24105966(+)$1	1	1	6	15.0000
.(((.	chr8:121823799-121824101(-)$1	1	93	98	15.0000
(((((	chr20:377273-377510(+)$1	1	7	12	15.0000
)).))	chr3:32932822-32933083(+)$1	1	102	107	15.0000
.((((	chr2:208633213-208633430(-)$1	1	159	164	15.0000
((((.	chr10:45472794-45473041(-)$1	1	93	98	15.0000
((...	chr10:97380755-97380992(-)$1	1	133	138	15.0000
(((((	chr21:34923312-34923541(+)$1	1	40	45	15.0000
(((..	chr7:150935333-150935605(+)$1	1	209	214	15.0000
(((((	chr19:18977954-18978247(+)$1	1	51	56	15.0000
.))).	chr6:32940421-32940665(+)$1	1	130	135	15.0000
..((.	chr1:151259158-151259407(+)$1	1	52	57	15.0000
)))).	chr21:34923341-34923574(+)$1	1	11	16	15.0000
.....	chr8:40011518-40011762(+)$1	1	0	5	15.0000
((...	chr10:102743360-102743596(+)$1	1	214	219	15.0000
)))).	chr10:74034723-74034964(+)$1	1	64	69	15.0000
(.(((	chr20:62679938-62680215(-)$1	1	43	48	15.0000
(.((.	chr3:184096045-184096352(+)$1	1	15	20	15.0000
.((((	chr11:821223-821471(+)$1	1	66	71	15.0000
)).).	chr18:30350392-30350634(+)$1	1	154	159	15.0000
..(((	chr12:49443935-49444186(-)$1	1	149	154	15.0000
)....	chr10:75551957-75552200(+)$1	1	179	184	15.0000
..)))	chr6:7542327-7542585(+)$1	1	54	59	15.0000
)))).	chr20:43058426-43058713(+)$1	1	66	71	15.0000
)))))	chr6:142630661-142630894(+)$1	1	143	148	15.0000
(((((	chr6:11190706-11190967(-)$1	1	75	80	15.0000
(.(..	chr9:115422190-115422435(+)$1	1	78	83	15.0000
)))).	chr12:76425043-76425325(-)$1	1	177	182	15.0000
(.(((	chr19:33792093-33792386(-)$1	1	8	13	15.0000
((...	chr12:89745236-89745490(-)$1	1	67	72	15.0000
)))))	chr17:18167813-18168049(+)$1	1	112	117	15.0000
)))..	chr20:419185-419438(-)$1	1	167	172	15.0000
)(((.	chr14:50360496-50360744(+)$1	1	18	23	15.0000
((((.	chr7:150068936-150069173(+)$1	1	3	8	15.0000
)))))	chr20:56140528-56140805(+)$1	1	71	76	15.0000
(((((	chr7:150934916-150935149(+)$1	1	74	79	15.0000
(((.(	chr16:22337050-22337308(+)$1	1	105	110	15.0000
.))))	chr14:23537139-23537388(-)$1	1	165	170	15.0000
(((..	chr2:238483279-238483521(-)$1	1	122	127	15.0000
.))).	chr16:71961810-71962076(+)$1	1	250	255	15.0000
)((((	chr20:61833796-61834053(-)$1	1	22	27	15.0000
...))	chr1:16475151-16475369(-)$1	1	55	60	15.0000
)))).	chr6:32940062-32940285(+)$1	1	89	94	15.0000
((((.	chr2:220082882-220083115(-)$1	1	56	61	15.0000
)))))	chr2:202003091-202003361(+)$1	1	121	126	15.0000
((((.	chr17:53345122-53345448(+)$1	1	21	26	15.0000
)))..	chr19:18499159-18499361(+)$1	1	196	201	15.0000
(((((	chr7:73096571-73096876(-)$1	1	65	70	15.0000
)))((	chr14:54417196-54417432(-)$1	1	53	58	15.0000
...((	chr17:74372660-74372899(+)$1	1	18	23	15.0000
..)))	chr9:124534837-124535085(+)$1	1	238	243	15.0000

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	
A : 0.98	a : 0.01	

#score	870.0000000000001
#seq	58
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_UTR_m1_run1.nuc.txt

#NT
uuuuuucuu	chr17:40126364-40126614(+)$1	250	82	91	19.3770
uuuuuuuuu	chr14:102231705-102231949(+)$1	244	200	209	23.6393
uuuucuuuu	chr13:21355265-21355490(-)$1	225	48	57	19.7868
UUUUGUUUU	chr2:65315109-65315351(-)$1	242	22	31	19.5409
UUUAUUUUU	chr2:239355268-239355545(+)$1	277	238	247	19.2131
UUUUUUUUU	chrX:150574250-150574523(+)$1	273	169	178	23.6393
UUUUUUUGU	chr8:130853666-130853911(-)$1	245	49	58	19.0491
UCUUUUUUU	chr2:153511803-153512061(-)$1	258	46	55	18.9672
UUUUAUUUU	chr5:137088286-137088539(-)$1	253	200	209	19.5409
UUUUAUUUU	chr19:10800354-10800585(+)$1	231	56	65	19.5409
AUUUUUUUU	chr7:115898527-115898760(+)$1	233	87	96	19.2131
UUUUUUUUU	chr12:76440106-76440396(-)$1	290	117	126	23.6393
UUUCUUUUU	chr14:81642960-81643215(-)$1	255	29	38	19.2131
UUUUCUUUU	chr17:62501349-62501601(-)$1	252	63	72	19.7868
uuuuuuuuu	chr2:29023031-29023246(+)$1	215	61	70	23.6393
UUUUUUUUU	chr9:110092553-110092805(+)$1	252	89	98	23.6393
UUUUUCUUU	chr11:130014309-130014551(+)$1	242	168	177	19.3770
UUUUUUUAU	chr1:235274369-235274604(-)$1	235	79	88	19.0491
UUUUUUUUU	chr14:100744550-100744807(+)$1	257	87	96	23.6393
UUUUGUUUU	chr7:100400386-100400641(-)$1	255	81	90	19.5409
UUAUUUUUU	chr1:182352085-182352298(-)$1	213	45	54	19.0491
UUUUUAUUU	chr2:65496340-65496586(+)$1	246	135	144	19.6229
UAUUUUUUU	chr11:65622379-65622609(-)$1	230	87	96	19.0491
uuuuuuuuu	chr2:68405969-68406200(-)$1	231	52	61	23.6393
UUUUUUUUU	chr22:20114628-20114838(+)$1	210	89	98	23.6393
UUUCUUUUU	chr6:31637662-31637902(+)$1	240	79	88	19.2131
uuguuuuuu	chr11:5632425-5632741(+)$1	316	249	258	18.9672
UUUUCUUUU	chr1:202696544-202696802(-)$1	258	22	31	19.7868
UUUUUUUUU	chr12:76441887-76442134(-)$1	247	33	42	23.6393
UUUUUUUUU	chr9:97222878-97223112(+)$1	234	86	95	23.6393
UUUUCUUUU	chr1:180853923-180854166(+)$1	243	55	64	19.7868
UUUUCUUUU	chr20:31437688-31437940(+)$1	252	28	37	19.7868
UUUUUAUUU	chr6:43147608-43147864(+)$1	256	27	36	19.6229
UUAUUUUUU	chr1:182352017-182352285(-)$1	268	32	41	19.0491
UUUUUAUUU	chr6:49572886-49573135(-)$1	249	85	94	19.6229
uuuuuuuuu	chr15:52842644-52842911(-)$1	267	88	97	23.6393
uuuuuuuuu	chr19:13054829-13055039(+)$1	210	74	83	23.6393
GUUUUUUUU	chr9:100433446-100433754(+)$1	308	59	68	19.0491
AUUUUUUUU	chr7:143003667-143003919(+)$1	252	71	80	19.2131
UUUUUUUUU	chr14:103809044-103809314(+)$1	270	71	80	23.6393
uuuauuuuu	chr17:66527946-66528199(+)$1	253	3	12	19.2131
UUUUUUGUU	chr12:69667909-69668182(+)$1	273	243	252	19.2131
UUUUUAUUU	chr1:228285812-228286051(+)$1	239	61	70	19.6229
uuuuuuuuu	chr18:12986729-12986968(+)$1	239	0	9	23.6393
uuuuuuuuu	chr1:150192358-150192604(-)$1	246	76	85	23.6393
uuuuuuuuu	chr14:31364056-31364359(-)$1	303	48	57	23.6393
uuuuuuuuu	chr3:33132257-33132508(-)$1	251	80	89	23.6393
UUUUUUAUU	chr14:20925727-20925964(+)$1	237	97	106	19.2950
UUUUUUAUU	chr6:109688455-109688708(-)$1	253	83	92	19.2950
UUUUUUUCU	chr14:75548806-75549085(-)$1	279	69	78	19.1311
UUUGUUUUU	chr2:198256844-198257107(-)$1	263	236	245	19.1311
UUUUUUCUU	chr1:38147292-38147532(-)$1	240	81	90	19.3770
UUUUUCUUU	chr6:109688647-109688896(-)$1	249	75	84	19.3770
AUUUUUUUU	chr12:31433707-31433984(-)$1	277	184	193	19.2131
UUUUUUUCU	chr3:138409724-138409958(-)$1	234	208	217	19.1311
UAUUUUUUU	chr17:30704942-30705204(+)$1	262	88	97	19.0491
UUUUUAUUU	chr3:13358734-13358976(-)$1	242	92	101	19.6229
Uuuuuuuuu	chr17:44108467-44108760(-)$1	293	60	69	23.6393
UUUUUUUUU	chr7:130146140-130146415(-)$1	275	74	83	23.6393
UUUUUUUUU	chr12:53873345-53873562(+)$1	217	110	119	23.6393

#otherMatches

#Struct PSSM
iiiieeeee	chr22:24967878-24968196(+)$1	318	94	103	19.3770
===vvvvvv	chr17:40126364-40126614(+)$1	250	82	91	19.3770
h::::::::	chr14:102231705-102231949(+)$1	244	200	209	23.6393
GGGG{EEEE	chr13:21355265-21355490(-)$1	225	48	57	19.7868
nnniiiiii	chr2:65315109-65315351(-)$1	242	22	31	19.5409
eee:::FFF	chr2:239355268-239355545(+)$1	277	238	247	19.2131
ooooggggg	chrX:150574250-150574523(+)$1	273	169	178	23.6393
pppppppbb	chr8:130853666-130853911(-)$1	245	49	58	19.0491
2iiiiiiii	chr2:153511803-153512061(-)$1	258	46	55	18.9672
((cccmmmm	chr5:137088286-137088539(-)$1	253	200	209	19.5409
cc55555ff	chr19:10800354-10800585(+)$1	231	56	65	19.5409
qqqqccc33	chr7:115898527-115898760(+)$1	233	87	96	19.2131
b22bb::::	chr12:76440106-76440396(-)$1	290	117	126	23.6393
"""cccooo	chr14:81642960-81643215(-)$1	255	29	38	19.2131
:::::::::	chr17:62501349-62501601(-)$1	252	63	72	19.7868
:::::::::	chr2:29023031-29023246(+)$1	215	61	70	23.6393
[iiiiiiii	chr9:110092553-110092805(+)$1	252	89	98	23.6393
d####eeee	chr11:130014309-130014551(+)$1	242	168	177	19.3770
======:::	chr1:235274369-235274604(-)$1	235	79	88	19.0491
dgggggggl	chr14:100744550-100744807(+)$1	257	87	96	23.6393
ddCCCYYFF	chr7:100400386-100400641(-)$1	255	81	90	19.5409
oooooofff	chr1:182352085-182352298(-)$1	213	45	54	19.0491
deeeeemmm	chr2:65496340-65496586(+)$1	246	135	144	19.6229
:::::::::	chr11:65622379-65622609(-)$1	230	87	96	19.0491
$$$$$dddd	chr2:68405969-68406200(-)$1	231	52	61	23.6393
22ccc]hhh	chr22:20114628-20114838(+)$1	210	89	98	23.6393
dddd####b	chr6:31637662-31637902(+)$1	240	79	88	19.2131
ddd::::::	chr11:5632425-5632741(+)$1	316	249	258	18.9672
ee[eeeee'	chr1:202696544-202696802(-)$1	258	22	31	19.7868
%%%%iiiii	chr12:76441887-76442134(-)$1	247	33	42	23.6393
>>>>>>>gg	chr9:97222878-97223112(+)$1	234	86	95	23.6393
RRRRRRRII	chr1:180853923-180854166(+)$1	243	55	64	19.7868
=((((((((	chr20:31437688-31437940(+)$1	252	28	37	19.7868
fff::::::	chr6:43147608-43147864(+)$1	256	27	36	19.6229
oooooofff	chr1:182352017-182352285(-)$1	268	32	41	19.0491
c!!ffffff	chr6:49572886-49573135(-)$1	249	85	94	19.6229
:::::::::	chr15:52842644-52842911(-)$1	267	88	97	23.6393
:::::::::	chr19:13054829-13055039(+)$1	210	74	83	23.6393
gmmmmgggg	chr9:100433446-100433754(+)$1	308	59	68	19.0491
eeeoooooo	chr7:143003667-143003919(+)$1	252	71	80	19.2131
qqqqqqqqe	chr14:103809044-103809314(+)$1	270	71	80	23.6393
eeeexxxxx	chr17:66527946-66528199(+)$1	253	3	12	19.2131
d:::::III	chr12:69667909-69668182(+)$1	273	243	252	19.2131
e[eeeeenn	chr1:228285812-228286051(+)$1	239	61	70	19.6229
:::::::::	chr18:12986729-12986968(+)$1	239	0	9	23.6393
:::::::::	chr1:150192358-150192604(-)$1	246	76	85	23.6393
mmmmfffff	chr14:31364056-31364359(-)$1	303	48	57	23.6393
::::ggggg	chr3:33132257-33132508(-)$1	251	80	89	23.6393
22ggggggg	chr14:20925727-20925964(+)$1	237	97	106	19.2950
JJJJJJJJJ	chr6:109688455-109688708(-)$1	253	83	92	19.2950
ggg333eee	chr14:75548806-75549085(-)$1	279	69	78	19.1311
qqqccceee	chr2:198256844-198257107(-)$1	263	236	245	19.1311
zzzzzzzze	chr1:38147292-38147532(-)$1	240	81	90	19.3770
ssssccc22	chr6:109688647-109688896(-)$1	249	75	84	19.3770
hhhh99999	chr12:31433707-31433984(-)$1	277	184	193	19.2131
eehhhhhhh	chr3:138409724-138409958(-)$1	234	208	217	19.1311
:::::::::	chr17:30704942-30705204(+)$1	262	88	97	19.0491
d::::::::	chr3:13358734-13358976(-)$1	242	92	101	19.6229
ddd333ggg	chr17:44108467-44108760(-)$1	293	60	69	23.6393
:::::JJJJ	chr7:130146140-130146415(-)$1	275	74	83	23.6393
:::::::::	chr12:53873345-53873562(+)$1	217	110	119	23.6393

#DB
)))))))))	chr22:24967878-24968196(+)$1	1	94	103	19.3770
(((......	chr17:40126364-40126614(+)$1	1	82	91	19.3770
)........	chr14:102231705-102231949(+)$1	1	200	209	23.6393
((((.((((	chr13:21355265-21355490(-)$1	1	48	57	19.7868
...))))))	chr2:65315109-65315351(-)$1	1	22	31	19.5409
)))...)))	chr2:239355268-239355545(+)$1	1	238	247	19.2131
....)))))	chrX:150574250-150574523(+)$1	1	169	178	23.6393
.......))	chr8:130853666-130853911(-)$1	1	49	58	19.0491
.))))))))	chr2:153511803-153512061(-)$1	1	46	55	18.9672
..(((....	chr5:137088286-137088539(-)$1	1	200	209	19.5409
)).....))	chr19:10800354-10800585(+)$1	1	56	65	19.5409
....)))..	chr7:115898527-115898760(+)$1	1	87	96	19.2131
)..))....	chr12:76440106-76440396(-)$1	1	117	126	23.6393
...(((...	chr14:81642960-81643215(-)$1	1	29	38	19.2131
.........	chr17:62501349-62501601(-)$1	1	63	72	19.7868
.........	chr2:29023031-29023246(+)$1	1	61	70	23.6393
.((((((((	chr9:110092553-110092805(+)$1	1	89	98	23.6393
(....((((	chr11:130014309-130014551(+)$1	1	168	177	19.3770
))))))...	chr1:235274369-235274604(-)$1	1	79	88	19.0491
)(((((((.	chr14:100744550-100744807(+)$1	1	87	96	23.6393
)))))..))	chr7:100400386-100400641(-)$1	1	81	90	19.5409
......)))	chr1:182352085-182352298(-)$1	1	45	54	19.0491
((((((...	chr2:65496340-65496586(+)$1	1	135	144	19.6229
.........	chr11:65622379-65622609(-)$1	1	87	96	19.0491
.....((((	chr2:68405969-68406200(-)$1	1	52	61	23.6393
..))).)))	chr22:20114628-20114838(+)$1	1	89	98	23.6393
((((....(	chr6:31637662-31637902(+)$1	1	79	88	19.2131
)))......	chr11:5632425-5632741(+)$1	1	249	258	18.9672
((.(((((.	chr1:202696544-202696802(-)$1	1	22	31	19.7868
....(((((	chr12:76441887-76442134(-)$1	1	33	42	23.6393
.......))	chr9:97222878-97223112(+)$1	1	86	95	23.6393
.......((	chr1:180853923-180854166(+)$1	1	55	64	19.7868
(........	chr20:31437688-31437940(+)$1	1	28	37	19.7868
)))......	chr6:43147608-43147864(+)$1	1	27	36	19.6229
......)))	chr1:182352017-182352285(-)$1	1	32	41	19.0491
(..((((((	chr6:49572886-49573135(-)$1	1	85	94	19.6229
.........	chr15:52842644-52842911(-)$1	1	88	97	23.6393
.........	chr19:13054829-13055039(+)$1	1	74	83	23.6393
(....))))	chr9:100433446-100433754(+)$1	1	59	68	19.0491
(((......	chr7:143003667-143003919(+)$1	1	71	80	19.2131
........)	chr14:103809044-103809314(+)$1	1	71	80	23.6393
((((.....	chr17:66527946-66528199(+)$1	1	3	12	19.2131
).....)))	chr12:69667909-69668182(+)$1	1	243	252	19.2131
(.(((((..	chr1:228285812-228286051(+)$1	1	61	70	19.6229
.........	chr18:12986729-12986968(+)$1	1	0	9	23.6393
.........	chr1:150192358-150192604(-)$1	1	76	85	23.6393
....)))))	chr14:31364056-31364359(-)$1	1	48	57	23.6393
....(((((	chr3:33132257-33132508(-)$1	1	80	89	23.6393
..)))))))	chr14:20925727-20925964(+)$1	1	97	106	19.2950
(((((((((	chr6:109688455-109688708(-)$1	1	83	92	19.2950
)))...)))	chr14:75548806-75549085(-)$1	1	69	78	19.1311
...))))))	chr2:198256844-198257107(-)$1	1	236	245	19.1311
........)	chr1:38147292-38147532(-)$1	1	81	90	19.3770
....)))..	chr6:109688647-109688896(-)$1	1	75	84	19.3770
)))).....	chr12:31433707-31433984(-)$1	1	184	193	19.2131
)))))))))	chr3:138409724-138409958(-)$1	1	208	217	19.1311
.........	chr17:30704942-30705204(+)$1	1	88	97	19.0491
)........	chr3:13358734-13358976(-)$1	1	92	101	19.6229
)))...)))	chr17:44108467-44108760(-)$1	1	60	69	23.6393
.....((((	chr7:130146140-130146415(-)$1	1	74	83	23.6393
.........	chr12:53873345-53873562(+)$1	1	110	119	23.6393

#PSSM
U : 0.72	u : 0.21	A : 0.04	G : 0.01	
U : 0.72	u : 0.22	A : 0.03	C : 0.01	
U : 0.73	u : 0.21	A : 0.03	g : 0.01	
U : 0.70	u : 0.21	C : 0.03	A : 0.01	a : 0.01	G : 0.01	
U : 0.63	u : 0.21	C : 0.06	G : 0.03	A : 0.03	c : 0.01	
U : 0.65	u : 0.22	A : 0.08	C : 0.03	
U : 0.68	u : 0.21	C : 0.03	A : 0.03	c : 0.01	G : 0.01	
U : 0.70	u : 0.22	C : 0.03	G : 0.01	A : 0.01	
U : 0.77	u : 0.22	

#score	1265.8524590163947
#seq	61
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_transcript_m2_run1.nuc.txt

#NT
gggugggu	chr22:49975069-49975342(-)$1	273	44	52	16.1739
AGGUGGGG	chr22:45129343-45129590(+)$1	247	58	66	16.1014
GAGUGGGG	chr19:4034619-4034827(+)$1	208	64	72	16.4637
GGGAGGGG	chr3:13374850-13375112(-)$1	262	114	122	16.3913
GGGUGGCG	chr3:128211819-128212051(+)$1	232	25	33	16.1739
GGGUGGGG	chr3:129612250-129612502(-)$1	252	230	238	20.5217
GGGUGGUG	chr22:35736112-35736369(+)$1	257	95	103	16.3188
GGGUGGUG	chr10:72468246-72468496(+)$1	250	24	32	16.3188
AGGUGGGG	chr7:1925450-1925746(-)$1	296	81	89	16.1014
GUGUGGGG	chr10:133765838-133766107(+)$1	269	9	17	16.7536
GGGCGGGG	chr1:27883740-27883964(-)$1	224	18	26	16.3913
GGGUGGGC	chr4:10094810-10095081(-)$1	271	19	27	16.1014
ggcugggg	chr12:122186003-122186278(+)$1	275	6	14	16.1014
GGGUGAGG	chr16:1405916-1406200(+)$1	284	52	60	16.1014
GUGUGGGG	chr16:89023723-89023989(-)$1	266	39	47	16.7536
GCGUGGGG	chr19:1104071-1104309(+)$1	238	129	137	16.5362
GGCUGGGG	chr22:20122834-20123080(+)$1	246	119	127	16.1014
GGGUGAGG	chr1:31380170-31380451(-)$1	281	41	49	16.1014
GGGUGGGG	chr10:43904349-43904599(-)$1	250	70	78	20.5217
GGGUGGGG	chr9:123639022-123639272(-)$1	250	43	51	20.5217
gggucggg	chr9:139560433-139560697(+)$1	264	23	31	15.8840
AGGUGGGG	chr9:136132902-136133126(-)$1	224	113	121	16.1014
GGGUGGGG	chr19:12811283-12811564(-)$1	281	94	102	20.5217
GGGUGGGG	chr22:50040147-50040444(-)$1	297	274	282	20.5217
GAGUGGGG	chr1:36787654-36787903(+)$1	249	37	45	16.4637
GGGUGGGG	chr15:40758374-40758664(+)$1	290	270	278	20.5217
GGGUGGGG	chr4:1216344-1216590(-)$1	246	210	218	20.5217
GGGCGGGG	chr7:1498572-1498834(-)$1	262	70	78	16.3913
GGGUGUGG	chr22:19996030-19996293(-)$1	263	87	95	16.0289
GUGUGGGG	chr10:133766101-133766340(+)$1	239	88	96	16.7536
GGGUGGGG	chr4:8613207-8613472(+)$1	265	2	10	20.5217
GGGUGGGG	chrX:149107496-149107788(+)$1	292	90	98	20.5217
GGGUGGUG	chr2:160569285-160569571(+)$1	286	85	93	16.3188
GGGUGGAG	chr4:715218-715463(+)$1	245	63	71	16.1014
GGGUGGGG	chr9:139904712-139904986(-)$1	274	24	32	20.5217
GCGUGGGG	chr20:361849-362071(+)$1	222	204	212	16.5362
GGGUGGGA	chr12:56554114-56554409(+)$1	295	185	193	16.0289
GGGUGGGU	chr14:32546365-32546619(+)$1	254	35	43	16.1739
gggugggg	chr21:46856491-46856754(+)$1	263	69	77	20.5217
GGGUGGGG	chr22:50696140-50696405(-)$1	265	101	109	20.5217
GGGUGGCG	chr20:362087-362319(+)$1	232	124	132	16.1739
GGGUGGUG	chr10:80829495-80829732(+)$1	237	16	24	16.3188
GGGUGGGG	chr19:47280738-47280967(-)$1	229	178	186	20.5217
GCGUGGGG	chr16:1828219-1828486(-)$1	267	55	63	16.5362
GUGUGGGG	chr19:1602933-1603266(-)$1	333	57	65	16.7536
gggugggg	chr7:65338587-65338861(+)$1	274	23	31	20.5217
GGGUAGGG	chr22:50011593-50011907(-)$1	314	133	141	15.8115
GGGAGGGG	chr4:1238050-1238395(-)$1	345	61	69	16.3913
GGGCGGGG	chr1:228328094-228328411(+)$1	317	171	179	16.3913
GGGUGGGG	chr4:56412451-56412716(-)$1	265	26	34	20.5217
gggugugg	chr22:20110507-20110765(+)$1	258	6	14	16.0289
GUGUGGGG	chr16:591197-591439(+)$1	242	102	110	16.7536
GGGUGGGG	chr22:50032822-50033073(-)$1	251	55	63	20.5217
GGGUGGGG	chr4:39700257-39700531(+)$1	274	73	81	20.5217
GGGUGGGG	chr19:2445351-2445612(-)$1	261	19	27	20.5217
GGCUGGGG	chr22:50355736-50356026(+)$1	290	25	33	16.1014
gggagggg	chr12:132316763-132317087(+)$1	324	121	129	16.3913
GGGUGGGG	chr21:46644321-46644608(+)$1	287	86	94	20.5217
AGGUGGGG	chr12:132398557-132398816(+)$1	259	139	147	16.1014
GGCUGGGG	chr2:232573574-232573817(+)$1	243	207	215	16.1014
GGGUGGGG	chr19:4034939-4035252(+)$1	313	95	103	20.5217
GGGUGGGC	chr22:22047810-22048059(+)$1	249	209	217	16.1014
gggugagg	chr17:75465328-75465601(+)$1	273	6	14	16.1014
GGGCGGGG	chr16:88730027-88730396(+)$1	369	360	368	16.3913
GGGUGGGU	chr1:1181512-1181763(-)$1	251	95	103	16.1739
GGGUGGGG	chr11:75047188-75047516(-)$1	328	96	104	20.5217
GGGAGGGG	chr6:33266569-33266843(-)$1	274	117	125	16.3913
GGGUCGGG	chr7:77166748-77166983(+)$1	235	0	8	15.8840

#otherMatches

#Struct PSSM
]abb]bbE	chr16:88826508-88826785(-)$1	277	247	255	16.7536
C{IIIIII	chr22:49975069-49975342(-)$1	273	44	52	16.1739
33bb333b	chr22:45129343-45129590(+)$1	247	58	66	16.1014
oooooggg	chr19:4034619-4034827(+)$1	208	64	72	16.4637
hhhhhhee	chr3:13374850-13375112(-)$1	262	114	122	16.3913
annnnna]	chr3:128211819-128212051(+)$1	232	25	33	16.1739
nnffffff	chr3:129612250-129612502(-)$1	252	230	238	20.5217
bb]bb555	chr22:35736112-35736369(+)$1	257	95	103	16.3188
DDDDbb[d	chr10:72468246-72468496(+)$1	250	24	32	16.3188
22bbiiii	chr7:1925450-1925746(-)$1	296	81	89	16.1014
[ffffff%	chr10:133765838-133766107(+)$1	269	9	17	16.7536
"""hhhhh	chr1:27883740-27883964(-)$1	224	18	26	16.3913
JJJJTTTT	chr4:10094810-10095081(-)$1	271	19	27	16.1014
ffffff[b	chr12:122186003-122186278(+)$1	275	6	14	16.1014
cccttttt	chr16:1405916-1406200(+)$1	284	52	60	16.1014
eeeeHHHH	chr16:89023723-89023989(-)$1	266	39	47	16.7536
b[a[eeee	chr19:1104071-1104309(+)$1	238	129	137	16.5362
eee]ccc3	chr22:20122834-20123080(+)$1	246	119	127	16.1014
::::::::	chr1:31380170-31380451(-)$1	281	41	49	16.1014
EEEE{CCC	chr10:43904349-43904599(-)$1	250	70	78	20.5217
EEEEGGGG	chr9:123639022-123639272(-)$1	250	43	51	20.5217
iiiiii[f	chr9:139560433-139560697(+)$1	264	23	31	15.8840
#ggggggg	chr9:136132902-136133126(-)$1	224	113	121	16.1014
A}JJJJJJ	chr19:12811283-12811564(-)$1	281	94	102	20.5217
dddd333=	chr22:50040147-50040444(-)$1	297	274	282	20.5217
ggggggee	chr1:36787654-36787903(+)$1	249	37	45	16.4637
EEEEEYYA	chr15:40758374-40758664(+)$1	290	270	278	20.5217
iiiiiiii	chr4:1216344-1216590(-)$1	246	210	218	20.5217
dd22ffff	chr7:1498572-1498834(-)$1	262	70	78	16.3913
====####	chr22:19996030-19996293(-)$1	263	87	95	16.0289
ooofffff	chr10:133766101-133766340(+)$1	239	88	96	16.7536
CC{BB{BB	chr4:8613207-8613472(+)$1	265	2	10	20.5217
2dddd:ee	chrX:149107496-149107788(+)$1	292	90	98	20.5217
]ffffff:	chr2:160569285-160569571(+)$1	286	85	93	16.3188
=(((((((	chr4:715218-715463(+)$1	245	63	71	16.1014
ffff[aad	chr9:139904712-139904986(-)$1	274	24	32	20.5217
l=======	chr20:361849-362071(+)$1	222	204	212	16.5362
!ffffff!	chr12:56554114-56554409(+)$1	295	185	193	16.0289
CCC{BB{B	chr14:32546365-32546619(+)$1	254	35	43	16.1739
========	chr21:46856491-46856754(+)$1	263	69	77	20.5217
iiiiiiii	chr22:50696140-50696405(-)$1	265	101	109	20.5217
:::a[fff	chr20:362087-362319(+)$1	232	124	132	16.1739
CCBBKKDD	chr10:80829495-80829732(+)$1	237	16	24	16.3188
}A}A}BBY	chr19:47280738-47280967(-)$1	229	178	186	20.5217
ddd[eeee	chr16:1828219-1828486(-)$1	267	55	63	16.5362
BBKKA{CC	chr19:1602933-1603266(-)$1	333	57	65	16.7536
gg"""hhh	chr7:65338587-65338861(+)$1	274	23	31	20.5217
ffffff]a	chr22:50011593-50011907(-)$1	314	133	141	15.8115
CCC{DDDD	chr4:1238050-1238395(-)$1	345	61	69	16.3913
nnnfffff	chr1:228328094-228328411(+)$1	317	171	179	16.3913
{CCC:III	chr4:56412451-56412716(-)$1	265	26	34	20.5217
[a[a[a[b	chr22:20110507-20110765(+)$1	258	6	14	16.0289
ee]fffff	chr16:591197-591439(+)$1	242	102	110	16.7536
ccc[hhhh	chr22:50032822-50033073(-)$1	251	55	63	20.5217
i::::CCC	chr4:39700257-39700531(+)$1	274	73	81	20.5217
CC{DDDDK	chr19:2445351-2445612(-)$1	261	19	27	20.5217
ggggg[a[	chr22:50355736-50356026(+)$1	290	25	33	16.1014
JJJJJJJ{	chr12:132316763-132317087(+)$1	324	121	129	16.3913
'''''''h	chr21:46644321-46644608(+)$1	287	86	94	20.5217
[ccc"""d	chr12:132398557-132398816(+)$1	259	139	147	16.1014
nnnnnccc	chr2:232573574-232573817(+)$1	243	207	215	16.1014
D{BB{A:e	chr19:4034939-4035252(+)$1	313	95	103	20.5217
FFFFFFFF	chr22:22047810-22048059(+)$1	249	209	217	16.1014
qqqqqqqq	chr17:75465328-75465601(+)$1	273	6	14	16.1014
]ggggggg	chr16:88730027-88730396(+)$1	369	360	368	16.3913
ee22bb]e	chr1:1181512-1181763(-)$1	251	95	103	16.1739
EEE{FFFF	chr11:75047188-75047516(-)$1	328	96	104	20.5217
hhhhhhhh	chr6:33266569-33266843(-)$1	274	117	125	16.3913
:BB{DDDD	chr7:77166748-77166983(+)$1	235	0	8	15.8840

#DB
.))).)))	chr16:88826508-88826785(-)$1	1	247	255	16.7536
(.((((((	chr22:49975069-49975342(-)$1	1	44	52	16.1739
..))...)	chr22:45129343-45129590(+)$1	1	58	66	16.1014
.....)))	chr19:4034619-4034827(+)$1	1	64	72	16.4637
((((((((	chr3:13374850-13375112(-)$1	1	114	122	16.3913
(.....).	chr3:128211819-128212051(+)$1	1	25	33	16.1739
..))))))	chr3:129612250-129612502(-)$1	1	230	238	20.5217
)).))...	chr22:35736112-35736369(+)$1	1	95	103	16.3188
((((((.(	chr10:72468246-72468496(+)$1	1	24	32	16.3188
..))))))	chr7:1925450-1925746(-)$1	1	81	89	16.1014
.((((((.	chr10:133765838-133766107(+)$1	1	9	17	16.7536
...(((((	chr1:27883740-27883964(-)$1	1	18	26	16.3913
((((....	chr4:10094810-10095081(-)$1	1	19	27	16.1014
((((((.(	chr12:122186003-122186278(+)$1	1	6	14	16.1014
(((.....	chr16:1405916-1406200(+)$1	1	52	60	16.1014
))))))))	chr16:89023723-89023989(-)$1	1	39	47	16.7536
(.(.((((	chr19:1104071-1104309(+)$1	1	129	137	16.5362
))).))).	chr22:20122834-20123080(+)$1	1	119	127	16.1014
........	chr1:31380170-31380451(-)$1	1	41	49	16.1014
((((.(((	chr10:43904349-43904599(-)$1	1	70	78	20.5217
((((((((	chr9:123639022-123639272(-)$1	1	43	51	20.5217
((((((.(	chr9:139560433-139560697(+)$1	1	23	31	15.8840
.(((((((	chr9:136132902-136133126(-)$1	1	113	121	16.1014
).))))))	chr19:12811283-12811564(-)$1	1	94	102	20.5217
))))...)	chr22:50040147-50040444(-)$1	1	274	282	20.5217
))))))((	chr1:36787654-36787903(+)$1	1	37	45	16.4637
)))))..)	chr15:40758374-40758664(+)$1	1	270	278	20.5217
))))))))	chr4:1216344-1216590(-)$1	1	210	218	20.5217
))..))))	chr7:1498572-1498834(-)$1	1	70	78	16.3913
((((....	chr22:19996030-19996293(-)$1	1	87	95	16.0289
...)))))	chr10:133766101-133766340(+)$1	1	88	96	16.7536
((.((.((	chr4:8613207-8613472(+)$1	1	2	10	20.5217
.)))).((	chrX:149107496-149107788(+)$1	1	90	98	20.5217
.)))))).	chr2:160569285-160569571(+)$1	1	85	93	16.3188
(.......	chr4:715218-715463(+)$1	1	63	71	16.1014
((((.(((	chr9:139904712-139904986(-)$1	1	24	32	20.5217
.)))))))	chr20:361849-362071(+)$1	1	204	212	16.5362
.((((((.	chr12:56554114-56554409(+)$1	1	185	193	16.0289
(((.((.(	chr14:32546365-32546619(+)$1	1	35	43	16.1739
))))))))	chr21:46856491-46856754(+)$1	1	69	77	20.5217
((((((((	chr22:50696140-50696405(-)$1	1	101	109	20.5217
...(.(((	chr20:362087-362319(+)$1	1	124	132	16.1739
((((..((	chr10:80829495-80829732(+)$1	1	16	24	16.3188
.).).)).	chr19:47280738-47280967(-)$1	1	178	186	20.5217
(((.((((	chr16:1828219-1828486(-)$1	1	55	63	16.5362
((..(.((	chr19:1602933-1603266(-)$1	1	57	65	16.7536
((...(((	chr7:65338587-65338861(+)$1	1	23	31	20.5217
)))))).)	chr22:50011593-50011907(-)$1	1	133	141	15.8115
(((.((((	chr4:1238050-1238395(-)$1	1	61	69	16.3913
...)))))	chr1:228328094-228328411(+)$1	1	171	179	16.3913
.(((.(((	chr4:56412451-56412716(-)$1	1	26	34	20.5217
.(.(.(.(	chr22:20110507-20110765(+)$1	1	6	14	16.0289
)).)))))	chr16:591197-591439(+)$1	1	102	110	16.7536
(((.((((	chr22:50032822-50033073(-)$1	1	55	63	20.5217
)....(((	chr4:39700257-39700531(+)$1	1	73	81	20.5217
((.((((.	chr19:2445351-2445612(-)$1	1	19	27	20.5217
(((((.(.	chr22:50355736-50356026(+)$1	1	25	33	16.1014
(((((((.	chr12:132316763-132317087(+)$1	1	121	129	16.3913
.......(	chr21:46644321-46644608(+)$1	1	86	94	20.5217
.(((...(	chr12:132398557-132398816(+)$1	1	139	147	16.1014
.....)))	chr2:232573574-232573817(+)$1	1	207	215	16.1014
(.((.(.(	chr19:4034939-4035252(+)$1	1	95	103	20.5217
))))))))	chr22:22047810-22048059(+)$1	1	209	217	16.1014
........	chr17:75465328-75465601(+)$1	1	6	14	16.1014
.)))))))	chr16:88730027-88730396(+)$1	1	360	368	16.3913
))..)).)	chr1:1181512-1181763(-)$1	1	95	103	16.1739
(((.((((	chr11:75047188-75047516(-)$1	1	96	104	20.5217
((((((((	chr6:33266569-33266843(-)$1	1	117	125	16.3913
.((.((((	chr7:77166748-77166983(+)$1	1	0	8	15.8840

#PSSM
G : 0.82	g : 0.11	A : 0.05	
G : 0.72	g : 0.11	U : 0.08	C : 0.04	A : 0.02	
G : 0.84	g : 0.10	C : 0.04	c : 0.01	
U : 0.78	u : 0.10	C : 0.05	A : 0.04	a : 0.01	
G : 0.85	g : 0.10	c : 0.01	A : 0.01	C : 0.01	
G : 0.84	g : 0.08	A : 0.02	U : 0.01	u : 0.01	a : 0.01	
G : 0.78	g : 0.11	U : 0.05	C : 0.02	A : 0.01	
G : 0.81	g : 0.10	C : 0.02	U : 0.02	u : 0.01	A : 0.01	

#score	1212.3768115942014
#seq	69
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_CDS_m2_run2.nuc.txt

#NT
CCU	chr2:153515255-153515582(-)$1	327	42	45	9.0000
CCU	chr9:116997772-116998009(+)$1	237	10	13	9.0000
CCU	chr2:219143695-219143940(-)$1	245	10	13	9.0000
CCU	chr16:68389673-68389969(+)$1	296	20	23	9.0000
CCU	chr3:184046587-184046876(+)$1	289	33	36	9.0000
CCU	chr2:98275819-98276063(-)$1	244	102	105	9.0000
CCU	chr9:80921292-80921634(+)$1	342	72	75	9.0000
CCU	chr17:17722912-17723152(-)$1	240	46	49	9.0000
CCU	chr1:1685505-1685792(-)$1	287	1	4	9.0000
CCU	chr3:50327765-50328035(-)$1	270	13	16	9.0000
CCU	chr11:376287-376550(+)$1	263	40	43	9.0000
CCU	chr12:132391927-132392179(+)$1	252	1	4	9.0000
CCU	chr17:73127019-73127272(-)$1	253	24	27	9.0000
CCU	chr12:6670846-6671105(-)$1	259	0	3	9.0000
CCU	chr16:69419246-69419552(-)$1	306	3	6	9.0000
CCU	chr17:79953707-79953996(+)$1	289	67	70	9.0000
CCU	chr14:24030535-24030782(-)$1	247	116	119	9.0000
CCU	chr14:24034785-24035066(-)$1	281	15	18	9.0000
CCU	chr9:116981968-116982225(+)$1	257	11	14	9.0000
CCU	chr16:2014231-2014478(-)$1	247	59	62	9.0000
CCU	chr5:175958840-175959114(-)$1	274	4	7	9.0000
CCU	chr5:140021286-140021552(+)$1	266	31	34	9.0000
CCU	chr11:62652766-62653063(+)$1	297	11	14	9.0000
CCU	chr22:50355023-50355288(+)$1	265	83	86	9.0000
CCU	chr1:45097869-45098159(+)$1	290	96	99	9.0000
CCU	chr9:131750194-131750463(+)$1	269	12	15	9.0000
CCU	chr9:140347019-140347231(-)$1	212	21	24	9.0000
CCU	chr16:28847414-28847667(+)$1	253	2	5	9.0000
CCU	chr12:122296570-122296834(-)$1	264	17	20	9.0000
CCU	chr16:87426011-87426270(+)$1	259	14	17	9.0000
CCU	chrX:47104266-47104527(+)$1	261	36	39	9.0000
CCU	chr16:67234401-67234677(+)$1	276	17	20	9.0000
CCU	chr22:50689205-50689469(-)$1	264	77	80	9.0000
CCU	chr2:152266765-152267041(+)$1	276	29	32	9.0000
CCU	chr1:40771306-40771554(-)$1	248	55	58	9.0000
CCU	chr21:47420988-47421271(+)$1	283	10	13	9.0000
CCU	chr20:61436277-61436554(+)$1	277	130	133	9.0000
CCU	chr22:42017973-42018223(+)$1	250	15	18	9.0000
CCU	chr11:64882266-64882506(+)$1	240	25	28	9.0000
CCU	chr9:116270756-116270995(+)$1	239	2	5	9.0000
CCU	chr7:44609394-44609659(-)$1	265	17	20	9.0000
CCU	chr1:205495849-205496106(+)$1	257	61	64	9.0000
CCU	chr16:3070404-3070672(+)$1	268	29	32	9.0000
CCU	chr19:11038948-11039259(-)$1	311	19	22	9.0000
CCU	chrX:44941817-44942068(+)$1	251	165	168	9.0000
CCU	chr2:97530500-97530735(-)$1	235	59	62	9.0000
CCU	chr9:130710326-130710578(-)$1	252	13	16	9.0000
CCU	chr7:100174287-100174521(-)$1	234	28	31	9.0000
CCU	chr1:150939854-150940146(-)$1	292	22	25	9.0000
CCU	chr12:122296486-122296770(-)$1	284	4	7	9.0000
CCU	chr4:1800921-1801196(+)$1	275	28	31	9.0000
CCU	chr6:30893140-30893441(+)$1	301	38	41	9.0000
CCU	chr6:31612083-31612329(-)$1	246	6	9	9.0000
CCU	chr6:35446939-35447214(-)$1	275	6	9	9.0000
CCU	chr14:50246282-50246538(+)$1	256	20	23	9.0000
CCU	chr20:47682741-47683004(+)$1	263	118	121	9.0000
CCU	chr9:117031399-117031674(+)$1	275	4	7	9.0000
CCU	chr17:42266824-42267120(+)$1	296	3	6	9.0000
CCU	chr17:36871931-36872272(+)$1	341	34	37	9.0000
CCU	chr9:117050910-117051131(+)$1	221	24	27	9.0000
CCU	chr14:35872870-35873122(-)$1	252	8	11	9.0000
CCU	chr17:39976061-39976361(+)$1	300	19	22	9.0000
CCU	chr16:2818877-2819100(+)$1	223	15	18	9.0000
CCU	chr3:52727310-52727557(+)$1	247	80	83	9.0000
CCU	chr16:81694428-81694707(+)$1	279	34	37	9.0000
CCU	chr22:50354807-50355070(+)$1	263	114	117	9.0000
CCU	chr16:89265072-89265306(-)$1	234	2	5	9.0000
CCU	chr16:88781320-88781574(+)$1	254	29	32	9.0000
CCU	chr19:19767526-19767766(-)$1	240	150	153	9.0000
CCU	chr17:74099378-74099634(-)$1	256	79	82	9.0000
CCU	chr17:41150762-41151008(+)$1	246	23	26	9.0000
CCU	chr17:73871843-73872099(-)$1	256	43	46	9.0000
CCU	chr20:32661539-32661797(+)$1	258	22	25	9.0000
CCU	chr7:100285114-100285391(-)$1	277	14	17	9.0000
CCU	chr14:24620544-24620861(+)$1	317	100	103	9.0000
CCU	chr2:97493532-97493828(+)$1	296	56	59	9.0000
CCU	chr17:76200897-76201155(+)$1	258	15	18	9.0000
CCU	chr11:89943600-89943871(-)$1	271	34	37	9.0000
CCU	chr16:67976989-67977262(-)$1	273	29	32	9.0000
CCU	chr19:49458798-49459115(+)$1	317	43	46	9.0000
CCU	chr16:2577620-2577895(+)$1	275	8	11	9.0000
CCU	chr16:1816756-1817043(+)$1	287	6	9	9.0000
CCU	chr20:10625801-10626060(-)$1	259	45	48	9.0000
CCU	chr22:19393157-19393424(-)$1	267	7	10	9.0000
CCU	chr19:35991265-35991538(-)$1	273	41	44	9.0000
CCU	chr16:2014143-2014407(-)$1	264	11	14	9.0000
CCU	chr16:58576106-58576396(-)$1	290	38	41	9.0000
CCU	chr17:48560957-48561229(+)$1	272	12	15	9.0000
CCU	chr14:103568868-103569146(+)$1	278	58	61	9.0000
CCU	chrX:53227702-53227987(-)$1	285	13	16	9.0000
CCU	chr6:30698189-30698419(-)$1	230	64	67	9.0000
CCU	chr17:36878291-36878540(+)$1	249	75	78	9.0000
CCU	chr3:47458481-47458733(-)$1	252	21	24	9.0000
CCU	chr3:53892621-53892868(+)$1	247	106	109	9.0000
CCU	chr15:65114474-65114733(-)$1	259	19	22	9.0000
CCU	chr6:30888856-30889126(+)$1	270	2	5	9.0000
CCU	chr14:75348618-75348916(+)$1	298	19	22	9.0000
CCU	chr16:279151-279390(-)$1	239	1	4	9.0000
CCU	chr6:31602097-31602363(+)$1	266	10	13	9.0000

#otherMatches

#Struct PSSM
f$$	chr17:40715042-40715311(+)$1	269	40	43	9.0000
"ee	chr2:153515255-153515582(-)$1	327	42	45	9.0000
DDK	chr9:116997772-116998009(+)$1	237	10	13	9.0000
fff	chr2:219143695-219143940(-)$1	245	10	13	9.0000
CC{	chr16:68389673-68389969(+)$1	296	20	23	9.0000
eee	chr3:184046587-184046876(+)$1	289	33	36	9.0000
bb]	chr2:98275819-98276063(-)$1	244	102	105	9.0000
ttt	chr9:80921292-80921634(+)$1	342	72	75	9.0000
fff	chr17:17722912-17723152(-)$1	240	46	49	9.0000
:::	chr1:1685505-1685792(-)$1	287	1	4	9.0000
bbf	chr3:50327765-50328035(-)$1	270	13	16	9.0000
]dd	chr11:376287-376550(+)$1	263	40	43	9.0000
FFF	chr12:132391927-132392179(+)$1	252	1	4	9.0000
ggn	chr17:73127019-73127272(-)$1	253	24	27	9.0000
BB{	chr12:6670846-6671105(-)$1	259	0	3	9.0000
FFF	chr16:69419246-69419552(-)$1	306	3	6	9.0000
ee6	chr17:79953707-79953996(+)$1	289	67	70	9.0000
hhh	chr14:24030535-24030782(-)$1	247	116	119	9.0000
eee	chr14:24034785-24035066(-)$1	281	15	18	9.0000
ppp	chr9:116981968-116982225(+)$1	257	11	14	9.0000
mmm	chr16:2014231-2014478(-)$1	247	59	62	9.0000
DDD	chr5:175958840-175959114(-)$1	274	4	7	9.0000
fff	chr5:140021286-140021552(+)$1	266	31	34	9.0000
DFF	chr11:62652766-62653063(+)$1	297	11	14	9.0000
MMA	chr22:50355023-50355288(+)$1	265	83	86	9.0000
eee	chr1:45097869-45098159(+)$1	290	96	99	9.0000
GGG	chr9:131750194-131750463(+)$1	269	12	15	9.0000
qqq	chr9:140347019-140347231(-)$1	212	21	24	9.0000
GGG	chr16:28847414-28847667(+)$1	253	2	5	9.0000
===	chr12:122296570-122296834(-)$1	264	17	20	9.0000
GGG	chr16:87426011-87426270(+)$1	259	14	17	9.0000
DDD	chrX:47104266-47104527(+)$1	261	36	39	9.0000
===	chr16:67234401-67234677(+)$1	276	17	20	9.0000
33f	chr22:50689205-50689469(-)$1	264	77	80	9.0000
eee	chr2:152266765-152267041(+)$1	276	29	32	9.0000
ccg	chr1:40771306-40771554(-)$1	248	55	58	9.0000
:::	chr21:47420988-47421271(+)$1	283	10	13	9.0000
ccd	chr20:61436277-61436554(+)$1	277	130	133	9.0000
iii	chr22:42017973-42018223(+)$1	250	15	18	9.0000
cmm	chr11:64882266-64882506(+)$1	240	25	28	9.0000
eee	chr9:116270756-116270995(+)$1	239	2	5	9.0000
ddd	chr7:44609394-44609659(-)$1	265	17	20	9.0000
ddd	chr1:205495849-205496106(+)$1	257	61	64	9.0000
fff	chr16:3070404-3070672(+)$1	268	29	32	9.0000
CCC	chr19:11038948-11039259(-)$1	311	19	22	9.0000
cc#	chrX:44941817-44942068(+)$1	251	165	168	9.0000
:dd	chr2:97530500-97530735(-)$1	235	59	62	9.0000
bb[	chr9:130710326-130710578(-)$1	252	13	16	9.0000
f[b	chr7:100174287-100174521(-)$1	234	28	31	9.0000
c[d	chr1:150939854-150940146(-)$1	292	22	25	9.0000
:II	chr12:122296486-122296770(-)$1	284	4	7	9.0000
JJ{	chr4:1800921-1801196(+)$1	275	28	31	9.0000
ccc	chr6:30893140-30893441(+)$1	301	38	41	9.0000
mmm	chr6:31612083-31612329(-)$1	246	6	9	9.0000
amm	chr6:35446939-35447214(-)$1	275	6	9	9.0000
III	chr14:50246282-50246538(+)$1	256	20	23	9.0000
:EE	chr20:47682741-47683004(+)$1	263	118	121	9.0000
AGG	chr9:117031399-117031674(+)$1	275	4	7	9.0000
:FF	chr17:42266824-42267120(+)$1	296	3	6	9.0000
(((	chr17:36871931-36872272(+)$1	341	34	37	9.0000
ggg	chr9:117050910-117051131(+)$1	221	24	27	9.0000
:::	chr14:35872870-35873122(-)$1	252	8	11	9.0000
FFF	chr17:39976061-39976361(+)$1	300	19	22	9.0000
III	chr16:2818877-2819100(+)$1	223	15	18	9.0000
ood	chr3:52727310-52727557(+)$1	247	80	83	9.0000
EEE	chr16:81694428-81694707(+)$1	279	34	37	9.0000
FFF	chr22:50354807-50355070(+)$1	263	114	117	9.0000
DDD	chr16:89265072-89265306(-)$1	234	2	5	9.0000
dd]	chr16:88781320-88781574(+)$1	254	29	32	9.0000
ddd	chr19:19767526-19767766(-)$1	240	150	153	9.0000
===	chr17:74099378-74099634(-)$1	256	79	82	9.0000
EEE	chr17:41150762-41151008(+)$1	246	23	26	9.0000
cc]	chr17:73871843-73872099(-)$1	256	43	46	9.0000
ddd	chr20:32661539-32661797(+)$1	258	22	25	9.0000
DDD	chr7:100285114-100285391(-)$1	277	14	17	9.0000
ddG	chr14:24620544-24620861(+)$1	317	100	103	9.0000
nnn	chr2:97493532-97493828(+)$1	296	56	59	9.0000
d[c	chr17:76200897-76201155(+)$1	258	15	18	9.0000
e]b	chr11:89943600-89943871(-)$1	271	34	37	9.0000
ddd	chr16:67976989-67977262(-)$1	273	29	32	9.0000
FNN	chr19:49458798-49459115(+)$1	317	43	46	9.0000
bb!	chr16:2577620-2577895(+)$1	275	8	11	9.0000
ee[	chr16:1816756-1817043(+)$1	287	6	9	9.0000
ccc	chr20:10625801-10626060(-)$1	259	45	48	9.0000
ccc	chr22:19393157-19393424(-)$1	267	7	10	9.0000
ddd	chr19:35991265-35991538(-)$1	273	41	44	9.0000
bbq	chr16:2014143-2014407(-)$1	264	11	14	9.0000
ggg	chr16:58576106-58576396(-)$1	290	38	41	9.0000
GG{	chr17:48560957-48561229(+)$1	272	12	15	9.0000
ddd	chr14:103568868-103569146(+)$1	278	58	61	9.0000
##=	chrX:53227702-53227987(-)$1	285	13	16	9.0000
ggg	chr6:30698189-30698419(-)$1	230	64	67	9.0000
hhh	chr17:36878291-36878540(+)$1	249	75	78	9.0000
eed	chr3:47458481-47458733(-)$1	252	21	24	9.0000
cc:	chr3:53892621-53892868(+)$1	247	106	109	9.0000
rrr	chr15:65114474-65114733(-)$1	259	19	22	9.0000
{CC	chr6:30888856-30889126(+)$1	270	2	5	9.0000
GKK	chr14:75348618-75348916(+)$1	298	19	22	9.0000
CC{	chr16:279151-279390(-)$1	239	1	4	9.0000
BB:	chr6:31602097-31602363(+)$1	266	10	13	9.0000

#DB
(..	chr17:40715042-40715311(+)$1	1	40	43	9.0000
.((	chr2:153515255-153515582(-)$1	1	42	45	9.0000
((.	chr9:116997772-116998009(+)$1	1	10	13	9.0000
(((	chr2:219143695-219143940(-)$1	1	10	13	9.0000
((.	chr16:68389673-68389969(+)$1	1	20	23	9.0000
(((	chr3:184046587-184046876(+)$1	1	33	36	9.0000
)).	chr2:98275819-98276063(-)$1	1	102	105	9.0000
...	chr9:80921292-80921634(+)$1	1	72	75	9.0000
(((	chr17:17722912-17723152(-)$1	1	46	49	9.0000
...	chr1:1685505-1685792(-)$1	1	1	4	9.0000
(((	chr3:50327765-50328035(-)$1	1	13	16	9.0000
.))	chr11:376287-376550(+)$1	1	40	43	9.0000
(((	chr12:132391927-132392179(+)$1	1	1	4	9.0000
((.	chr17:73127019-73127272(-)$1	1	24	27	9.0000
((.	chr12:6670846-6671105(-)$1	1	0	3	9.0000
(((	chr16:69419246-69419552(-)$1	1	3	6	9.0000
)).	chr17:79953707-79953996(+)$1	1	67	70	9.0000
)))	chr14:24030535-24030782(-)$1	1	116	119	9.0000
(((	chr14:24034785-24035066(-)$1	1	15	18	9.0000
...	chr9:116981968-116982225(+)$1	1	11	14	9.0000
...	chr16:2014231-2014478(-)$1	1	59	62	9.0000
(((	chr5:175958840-175959114(-)$1	1	4	7	9.0000
(((	chr5:140021286-140021552(+)$1	1	31	34	9.0000
(((	chr11:62652766-62653063(+)$1	1	11	14	9.0000
..(	chr22:50355023-50355288(+)$1	1	83	86	9.0000
)))	chr1:45097869-45098159(+)$1	1	96	99	9.0000
(((	chr9:131750194-131750463(+)$1	1	12	15	9.0000
...	chr9:140347019-140347231(-)$1	1	21	24	9.0000
(((	chr16:28847414-28847667(+)$1	1	2	5	9.0000
(((	chr12:122296570-122296834(-)$1	1	17	20	9.0000
(((	chr16:87426011-87426270(+)$1	1	14	17	9.0000
(((	chrX:47104266-47104527(+)$1	1	36	39	9.0000
(((	chr16:67234401-67234677(+)$1	1	17	20	9.0000
..)	chr22:50689205-50689469(-)$1	1	77	80	9.0000
)))	chr2:152266765-152267041(+)$1	1	29	32	9.0000
)))	chr1:40771306-40771554(-)$1	1	55	58	9.0000
...	chr21:47420988-47421271(+)$1	1	10	13	9.0000
)))	chr20:61436277-61436554(+)$1	1	130	133	9.0000
(((	chr22:42017973-42018223(+)$1	1	15	18	9.0000
(..	chr11:64882266-64882506(+)$1	1	25	28	9.0000
(((	chr9:116270756-116270995(+)$1	1	2	5	9.0000
(((	chr7:44609394-44609659(-)$1	1	17	20	9.0000
)))	chr1:205495849-205496106(+)$1	1	61	64	9.0000
(((	chr16:3070404-3070672(+)$1	1	29	32	9.0000
(((	chr19:11038948-11039259(-)$1	1	19	22	9.0000
((.	chrX:44941817-44942068(+)$1	1	165	168	9.0000
.((	chr2:97530500-97530735(-)$1	1	59	62	9.0000
((.	chr9:130710326-130710578(-)$1	1	13	16	9.0000
(.(	chr7:100174287-100174521(-)$1	1	28	31	9.0000
(.(	chr1:150939854-150940146(-)$1	1	22	25	9.0000
.((	chr12:122296486-122296770(-)$1	1	4	7	9.0000
((.	chr4:1800921-1801196(+)$1	1	28	31	9.0000
)))	chr6:30893140-30893441(+)$1	1	38	41	9.0000
...	chr6:31612083-31612329(-)$1	1	6	9	9.0000
(..	chr6:35446939-35447214(-)$1	1	6	9	9.0000
(((	chr14:50246282-50246538(+)$1	1	20	23	9.0000
.((	chr20:47682741-47683004(+)$1	1	118	121	9.0000
(((	chr9:117031399-117031674(+)$1	1	4	7	9.0000
.((	chr17:42266824-42267120(+)$1	1	3	6	9.0000
...	chr17:36871931-36872272(+)$1	1	34	37	9.0000
(((	chr9:117050910-117051131(+)$1	1	24	27	9.0000
...	chr14:35872870-35873122(-)$1	1	8	11	9.0000
(((	chr17:39976061-39976361(+)$1	1	19	22	9.0000
(((	chr16:2818877-2819100(+)$1	1	15	18	9.0000
..)	chr3:52727310-52727557(+)$1	1	80	83	9.0000
(((	chr16:81694428-81694707(+)$1	1	34	37	9.0000
(((	chr22:50354807-50355070(+)$1	1	114	117	9.0000
(((	chr16:89265072-89265306(-)$1	1	2	5	9.0000
)).	chr16:88781320-88781574(+)$1	1	29	32	9.0000
(((	chr19:19767526-19767766(-)$1	1	150	153	9.0000
)))	chr17:74099378-74099634(-)$1	1	79	82	9.0000
(((	chr17:41150762-41151008(+)$1	1	23	26	9.0000
)).	chr17:73871843-73872099(-)$1	1	43	46	9.0000
)))	chr20:32661539-32661797(+)$1	1	22	25	9.0000
(((	chr7:100285114-100285391(-)$1	1	14	17	9.0000
)))	chr14:24620544-24620861(+)$1	1	100	103	9.0000
...	chr2:97493532-97493828(+)$1	1	56	59	9.0000
(.(	chr17:76200897-76201155(+)$1	1	15	18	9.0000
).)	chr11:89943600-89943871(-)$1	1	34	37	9.0000
)))	chr16:67976989-67977262(-)$1	1	29	32	9.0000
(..	chr19:49458798-49459115(+)$1	1	43	46	9.0000
((.	chr16:2577620-2577895(+)$1	1	8	11	9.0000
((.	chr16:1816756-1817043(+)$1	1	6	9	9.0000
)))	chr20:10625801-10626060(-)$1	1	45	48	9.0000
(((	chr22:19393157-19393424(-)$1	1	7	10	9.0000
(((	chr19:35991265-35991538(-)$1	1	41	44	9.0000
((.	chr16:2014143-2014407(-)$1	1	11	14	9.0000
(((	chr16:58576106-58576396(-)$1	1	38	41	9.0000
((.	chr17:48560957-48561229(+)$1	1	12	15	9.0000
(((	chr14:103568868-103569146(+)$1	1	58	61	9.0000
..(	chrX:53227702-53227987(-)$1	1	13	16	9.0000
)))	chr6:30698189-30698419(-)$1	1	64	67	9.0000
(((	chr17:36878291-36878540(+)$1	1	75	78	9.0000
))(	chr3:47458481-47458733(-)$1	1	21	24	9.0000
)).	chr3:53892621-53892868(+)$1	1	106	109	9.0000
...	chr15:65114474-65114733(-)$1	1	19	22	9.0000
.((	chr6:30888856-30889126(+)$1	1	2	5	9.0000
(..	chr14:75348618-75348916(+)$1	1	19	22	9.0000
((.	chr16:279151-279390(-)$1	1	1	4	9.0000
((.	chr6:31602097-31602363(+)$1	1	10	13	9.0000

#PSSM
C : 1.00	
C : 1.00	
U : 1.00	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_CDS_m1_run2.nuc.txt

#NT
GGCCUGG	chr22:50017055-50017295(-)$1	240	111	118	17.0000
GUCCUGG	chr16:89043056-89043321(-)$1	265	50	57	12.6666
GGCAUGG	chrM:14259-14470(-)$1	211	35	42	13.6666
ggccagg	chr20:57581994-57582255(-)$1	261	85	92	13.2500
gggcugg	chr8:9629756-9630018(+)$1	262	11	18	12.3333
GGCCUGG	chr5:179247988-179248234(+)$1	246	123	130	17.0000
GGCCAGG	chr11:57509206-57509453(+)$1	247	33	40	13.2500
GGCCAGG	chr6:166755806-166756080(-)$1	274	138	145	13.2500
UGCCUGG	chr19:4037213-4037476(+)$1	263	67	74	13.4166
UGCCUGG	chr2:216270974-216271242(-)$1	268	132	139	13.4166
GCCCUGG	chr19:47249399-47249656(-)$1	257	42	49	12.5833
GUCCUGG	chr12:123997756-123998008(-)$1	252	112	119	12.6666
GGCCUGG	chr19:17355915-17356262(-)$1	347	33	40	17.0000
GUCCUGG	chr16:3767290-3767590(-)$1	300	177	184	12.6666
GGCAUGG	chrM:14362-14573(-)$1	211	138	145	13.6666
GGCCUGA	chr3:13418913-13419165(-)$1	252	68	75	12.6666
GGCGUGG	chr7:45928444-45928689(+)$1	245	20	27	13.1666
CGCCUGG	chr1:11986052-11986325(-)$1	273	17	24	13.0833
GGCAUGG	chrM:14223-14450(-)$1	227	15	22	13.6666
GGCAUGG	chrM:14290-14500(-)$1	210	65	72	13.6666
ggccggg	chr11:64013976-64014219(-)$1	243	126	133	13.1666
UGCCUGG	chr1:229694147-229694416(-)$1	269	31	38	13.4166
GGCCUGG	chr6:31760725-31760998(-)$1	273	247	254	17.0000
AGCCUGG	chr2:216239985-216240211(-)$1	226	206	213	13.1666
UGCCUGG	chr16:70428840-70429072(-)$1	232	58	65	13.4166
GGCAUGG	chr1:44441402-44441622(+)$1	220	112	119	13.6666
GGCCCGG	chr19:2015513-2015791(-)$1	278	143	150	13.2500
GGCCUUG	chr22:19711744-19712005(+)$1	261	96	103	12.2500
GGCCUGG	chr2:97482325-97482579(+)$1	254	100	107	17.0000
GGCCCGG	chr16:28877636-28877877(+)$1	241	18	25	13.2500
GGCUUGG	chr11:65350861-65351124(+)$1	263	131	138	13.1666
GGGCUGG	chr15:41786026-41786293(+)$1	267	62	69	12.3333
GGCUUGG	chr20:62371657-62371968(+)$1	311	99	106	13.1666
GGCAUGG	chrM:14395-14601(-)$1	206	166	173	13.6666
ugccugg	chr4:74283705-74283943(+)$1	238	16	23	13.4166
AGCCUGG	chr2:216263894-216264165(-)$1	271	94	101	13.1666
GGCCUGG	chr7:2394471-2394725(+)$1	254	24	31	17.0000
GGCCUGG	chr12:49666592-49666876(+)$1	284	225	232	17.0000
GGCCUGA	chr19:6714262-6714492(-)$1	230	199	206	12.6666
GGCCUGG	chr22:21982894-21983127(-)$1	233	15	22	17.0000
ggccggg	chr11:64013917-64014152(-)$1	235	59	66	13.1666
GGCGUGG	chr7:45928263-45928524(+)$1	261	201	208	13.1666
GGCCUGG	chr19:803388-803670(+)$1	282	128	135	17.0000
AGCCUGG	chr19:6697304-6697566(-)$1	262	35	42	13.1666
GGCAUGG	chrM:14253-14459(-)$1	206	24	31	13.6666
GGCCUGG	chr22:50018090-50018335(-)$1	245	178	185	17.0000
GGCCUGC	chr22:21983237-21983519(-)$1	282	213	220	12.5000
UGCCUGG	chr20:5986851-5987129(+)$1	278	170	177	13.4166
ggcccgg	chr7:2394563-2394902(+)$1	339	108	115	13.2500
GGCAUGG	chrM:14270-14475(-)$1	205	40	47	13.6666
GGCCUGA	chrM:6827-7032(+)$1	205	130	137	12.6666
GGCCUGU	chr1:1155984-1156227(-)$1	243	7	14	12.5000
GGCCUGG	chr2:11484091-11484339(-)$1	248	230	237	17.0000
GGCCUAG	chrM:10586-10794(+)$1	208	103	110	12.2500
GCCCUGG	chr7:155090082-155090329(+)$1	247	207	214	12.5833
CGCCUGG	chr7:45928191-45928452(+)$1	261	51	58	13.0833
GGCCUGG	chr8:145149927-145150237(+)$1	310	282	289	17.0000
GGCCCGG	chr19:18530345-18530622(+)$1	277	20	27	13.2500
GGCCAGG	chr2:21228768-21229014(-)$1	246	123	130	13.2500

#otherMatches

#Struct PSSM
======q	chr18:12376923-12377176(-)$1	253	122	129	13.1666
cc]ccc3	chr22:50017055-50017295(-)$1	240	111	118	17.0000
!bboooo	chr16:89043056-89043321(-)$1	265	50	57	12.6666
iiiii##	chrM:14259-14470(-)$1	211	35	42	13.6666
mccc333	chr20:57581994-57582255(-)$1	261	85	92	13.2500
DDDDDD{	chr8:9629756-9630018(+)$1	262	11	18	12.3333
d[eeeee	chr5:179247988-179248234(+)$1	246	123	130	17.0000
]dddd22	chr11:57509206-57509453(+)$1	247	33	40	13.2500
}GGGGGG	chr6:166755806-166756080(-)$1	274	138	145	13.2500
fdddd]e	chr19:4037213-4037476(+)$1	263	67	74	13.4166
!ffffff	chr2:216270974-216271242(-)$1	268	132	139	13.4166
e####cc	chr19:47249399-47249656(-)$1	257	42	49	12.5833
hhhhhhh	chr12:123997756-123998008(-)$1	252	112	119	12.6666
dddd[bb	chr19:17355915-17356262(-)$1	347	33	40	17.0000
_____CC	chr16:3767290-3767590(-)$1	300	177	184	12.6666
iiiii##	chrM:14362-14573(-)$1	211	138	145	13.6666
FFFFFLL	chr3:13418913-13419165(-)$1	252	68	75	12.6666
hhbblll	chr7:45928444-45928689(+)$1	245	20	27	13.1666
D:=====	chr1:11986052-11986325(-)$1	273	17	24	13.0833
A{BBKKF	chrM:14223-14450(-)$1	227	15	22	13.6666
iiiii##	chrM:14290-14500(-)$1	210	65	72	13.6666
ddddddd	chr11:64013976-64014219(-)$1	243	126	133	13.1666
cbb]ccc	chr1:229694147-229694416(-)$1	269	31	38	13.4166
]a22a]f	chr6:31760725-31760998(-)$1	273	247	254	17.0000
DDDDddd	chr2:216239985-216240211(-)$1	226	206	213	13.1666
EEEEECC	chr16:70428840-70429072(-)$1	232	58	65	13.4166
DDDDDDD	chr1:44441402-44441622(+)$1	220	112	119	13.6666
DDD::dd	chr19:2015513-2015791(-)$1	278	143	150	13.2500
dddd22d	chr22:19711744-19712005(+)$1	261	96	103	12.2500
ggggggg	chr2:97482325-97482579(+)$1	254	100	107	17.0000
fff!!bb	chr16:28877636-28877877(+)$1	241	18	25	13.2500
eeeee!!	chr11:65350861-65351124(+)$1	263	131	138	13.1666
eeeeemm	chr15:41786026-41786293(+)$1	267	62	69	12.3333
hhhhlll	chr20:62371657-62371968(+)$1	311	99	106	13.1666
ffffCCC	chrM:14395-14601(-)$1	206	166	173	13.6666
ff!!ggg	chr4:74283705-74283943(+)$1	238	16	23	13.4166
d:FFFFF	chr2:216263894-216264165(-)$1	271	94	101	13.1666
!!bb[bb	chr7:2394471-2394725(+)$1	254	24	31	17.0000
dddd]cc	chr12:49666592-49666876(+)$1	284	225	232	17.0000
dd[a[bb	chr19:6714262-6714492(-)$1	230	199	206	12.6666
FFFF:bb	chr22:21982894-21983127(-)$1	233	15	22	17.0000
ffffffB	chr11:64013917-64014152(-)$1	235	59	66	13.1666
hhbblll	chr7:45928263-45928524(+)$1	261	201	208	13.1666
GGBB{CC	chr19:803388-803670(+)$1	282	128	135	17.0000
GGGGGCC	chr19:6697304-6697566(-)$1	262	35	42	13.1666
iiiii##	chrM:14253-14459(-)$1	206	24	31	13.6666
[gggggg	chr22:50018090-50018335(-)$1	245	178	185	17.0000
gggggg]	chr22:21983237-21983519(-)$1	282	213	220	12.5000
ddd[ggg	chr20:5986851-5987129(+)$1	278	170	177	13.4166
!!ccc[b	chr7:2394563-2394902(+)$1	339	108	115	13.2500
iiiii##	chrM:14270-14475(-)$1	205	40	47	13.6666
EEZZZBB	chrM:6827-7032(+)$1	205	130	137	12.6666
gg"""bb	chr1:1155984-1156227(-)$1	243	7	14	12.5000
peeeee2	chr2:11484091-11484339(-)$1	248	230	237	17.0000
dddllld	chrM:10586-10794(+)$1	208	103	110	12.2500
FFF}CCC	chr7:155090082-155090329(+)$1	247	207	214	12.5833
mbb22a]	chr7:45928191-45928452(+)$1	261	51	58	13.0833
hhhhhhh	chr8:145149927-145150237(+)$1	310	282	289	17.0000
odddd]d	chr19:18530345-18530622(+)$1	277	20	27	13.2500
cc22eee	chr2:21228768-21229014(-)$1	246	123	130	13.2500

#DB
((((((.	chr18:12376923-12377176(-)$1	1	122	129	13.1666
)).))).	chr22:50017055-50017295(-)$1	1	111	118	17.0000
.((....	chr16:89043056-89043321(-)$1	1	50	57	12.6666
(((((..	chrM:14259-14470(-)$1	1	35	42	13.6666
.)))...	chr20:57581994-57582255(-)$1	1	85	92	13.2500
((((((.	chr8:9629756-9630018(+)$1	1	11	18	12.3333
(.(((((	chr5:179247988-179248234(+)$1	1	123	130	17.0000
.))))..	chr11:57509206-57509453(+)$1	1	33	40	13.2500
.))))))	chr6:166755806-166756080(-)$1	1	138	145	13.2500
))))).)	chr19:4037213-4037476(+)$1	1	67	74	13.4166
.((((((	chr2:216270974-216271242(-)$1	1	132	139	13.4166
(....((	chr19:47249399-47249656(-)$1	1	42	49	12.5833
(((((((	chr12:123997756-123998008(-)$1	1	112	119	12.6666
((((.((	chr19:17355915-17356262(-)$1	1	33	40	17.0000
.....))	chr16:3767290-3767590(-)$1	1	177	184	12.6666
(((((..	chrM:14362-14573(-)$1	1	138	145	13.6666
(((((..	chr3:13418913-13419165(-)$1	1	68	75	12.6666
((((...	chr7:45928444-45928689(+)$1	1	20	27	13.1666
(.(((((	chr1:11986052-11986325(-)$1	1	17	24	13.0833
(.((..(	chrM:14223-14450(-)$1	1	15	22	13.6666
(((((..	chrM:14290-14500(-)$1	1	65	72	13.6666
)))))))	chr11:64013976-64014219(-)$1	1	126	133	13.1666
))).)))	chr1:229694147-229694416(-)$1	1	31	38	13.4166
.)..).)	chr6:31760725-31760998(-)$1	1	247	254	17.0000
))))(((	chr2:216239985-216240211(-)$1	1	206	213	13.1666
(((((((	chr16:70428840-70429072(-)$1	1	58	65	13.4166
(((((((	chr1:44441402-44441622(+)$1	1	112	119	13.6666
(((..((	chr19:2015513-2015791(-)$1	1	143	150	13.2500
))))..)	chr22:19711744-19712005(+)$1	1	96	103	12.2500
(((((((	chr2:97482325-97482579(+)$1	1	100	107	17.0000
(((..((	chr16:28877636-28877877(+)$1	1	18	25	13.2500
(((((..	chr11:65350861-65351124(+)$1	1	131	138	13.1666
(((((..	chr15:41786026-41786293(+)$1	1	62	69	12.3333
((((...	chr20:62371657-62371968(+)$1	1	99	106	13.1666
)))))))	chrM:14395-14601(-)$1	1	166	173	13.6666
((..(((	chr4:74283705-74283943(+)$1	1	16	23	13.4166
).(((((	chr2:216263894-216264165(-)$1	1	94	101	13.1666
..((.((	chr7:2394471-2394725(+)$1	1	24	31	17.0000
)))).))	chr12:49666592-49666876(+)$1	1	225	232	17.0000
((.(.((	chr19:6714262-6714492(-)$1	1	199	206	12.6666
((((.((	chr22:21982894-21983127(-)$1	1	15	22	17.0000
)))))))	chr11:64013917-64014152(-)$1	1	59	66	13.1666
((((...	chr7:45928263-45928524(+)$1	1	201	208	13.1666
((((.((	chr19:803388-803670(+)$1	1	128	135	17.0000
(((((((	chr19:6697304-6697566(-)$1	1	35	42	13.1666
(((((..	chrM:14253-14459(-)$1	1	24	31	13.6666
.((((((	chr22:50018090-50018335(-)$1	1	178	185	17.0000
)))))).	chr22:21983237-21983519(-)$1	1	213	220	12.5000
(((.(((	chr20:5986851-5987129(+)$1	1	170	177	13.4166
..(((.(	chr7:2394563-2394902(+)$1	1	108	115	13.2500
(((((..	chrM:14270-14475(-)$1	1	40	47	13.6666
))...))	chrM:6827-7032(+)$1	1	130	137	12.6666
((...((	chr1:1155984-1156227(-)$1	1	7	14	12.5000
.))))).	chr2:11484091-11484339(-)$1	1	230	237	17.0000
(((...)	chrM:10586-10794(+)$1	1	103	110	12.2500
))).)))	chr7:155090082-155090329(+)$1	1	207	214	12.5833
.))..).	chr7:45928191-45928452(+)$1	1	51	58	13.0833
)))))))	chr8:145149927-145150237(+)$1	1	282	289	17.0000
.)))).)	chr19:18530345-18530622(+)$1	1	20	27	13.2500
))..)))	chr2:21228768-21229014(-)$1	1	123	130	13.2500

#PSSM
G : 0.73	g : 0.08	U : 0.08	A : 0.05	C : 0.03	u : 0.01	
G : 0.81	g : 0.09	U : 0.05	C : 0.03	
C : 0.88	c : 0.08	g : 0.01	G : 0.01	
C : 0.70	A : 0.13	c : 0.09	G : 0.03	U : 0.03	
U : 0.78	A : 0.05	C : 0.05	u : 0.03	g : 0.03	G : 0.01	a : 0.01	c : 0.01	
G : 0.86	g : 0.09	U : 0.01	A : 0.01	
G : 0.81	g : 0.09	A : 0.05	C : 0.01	U : 0.01	

#score	833.0000000000009
#seq	60
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_UTR_m3_run2.nuc.txt

#NT
GGGAAG	chr15:34671256-34671500(-)$1	244	30	36	15.7173
GGGAAG	chr3:9956289-9956555(+)$1	266	194	200	15.7173
GGGAAG	chr7:100218585-100218843(-)$1	258	22	28	15.7173
GGGAAG	chr14:21485027-21485318(-)$1	291	144	150	15.7173
GGGCAG	chr20:61599510-61599764(+)$1	254	10	16	14.1956
GGGGAG	chr10:99218309-99218576(-)$1	267	12	18	14.0869
GGGCAG	chr14:24032498-24032768(-)$1	270	2	8	14.1956
GGGCAG	chr1:156219136-156219460(-)$1	324	136	142	14.1956
GGGAAG	chr12:7030670-7030906(+)$1	236	28	34	15.7173
GGGAAG	chr14:20915270-20915537(-)$1	267	13	19	15.7173
GGGCAG	chr8:145699230-145699474(+)$1	244	7	13	14.1956
GGGAAG	chr19:39221646-39221937(-)$1	291	223	229	15.7173
GGGAAG	chr2:220077094-220077313(-)$1	219	118	124	15.7173
GGGGAG	chr16:31201496-31201706(+)$1	210	2	8	14.0869
GGGAAG	chr7:926918-927246(+)$1	328	183	189	15.7173
GGGGAG	chr6:31937187-31937446(+)$1	259	49	55	14.0869
GGGGAG	chr17:37881867-37882174(+)$1	307	178	184	14.0869
GGGAAG	chr22:19318601-19318916(-)$1	315	150	156	15.7173
GGGAAG	chr3:184052905-184053161(+)$1	256	187	193	15.7173
GGGAAG	chr16:89809189-89809445(-)$1	256	185	191	15.7173
GGGCAG	chr16:31201336-31201562(+)$1	226	72	78	14.1956
GGGGAG	chr10:3821010-3821341(-)$1	331	60	66	14.0869
GGGCAG	chr1:156219079-156219336(-)$1	257	12	18	14.1956
GGGAAG	chr11:62360767-62361015(-)$1	248	11	17	15.7173
GGGGAG	chr13:111294636-111294955(-)$1	319	25	31	14.0869
GGGCAG	chr7:73008077-73008300(-)$1	223	68	74	14.1956
GGGAAG	chr12:57492990-57493290(-)$1	300	12	18	15.7173
GGGAAG	chrX:153609535-153609838(+)$1	303	62	68	15.7173
GGGAAG	chr3:49719067-49719339(+)$1	272	40	46	15.7173
GGGGAG	chr3:127790100-127790337(+)$1	237	43	49	14.0869
GGGAAG	chr19:34890874-34891138(+)$1	264	203	209	15.7173
GGGAAG	chr3:184107173-184107503(+)$1	330	83	89	15.7173
GGGGAG	chr7:934986-935282(+)$1	296	28	34	14.0869
GGGCAG	chr16:4740212-4740461(+)$1	249	180	186	14.1956
GGGAAG	chr9:117073375-117073629(+)$1	254	121	127	15.7173
GGGAAG	chr19:6751200-6751469(+)$1	269	36	42	15.7173
GGGGAG	chr16:30016811-30017101(+)$1	290	201	207	14.0869
GGGAAG	chr14:23794626-23794845(+)$1	219	62	68	15.7173
GGGAAG	chr20:17594343-17594549(-)$1	206	79	85	15.7173
GGGGAG	chr11:725696-725945(+)$1	249	3	9	14.0869
GGGCAG	chr9:117002399-117002622(+)$1	223	169	175	14.1956
GGGCAG	chr5:179263641-179263929(+)$1	288	91	97	14.1956
GGGCAG	chr22:32007028-32007295(+)$1	267	175	181	14.1956
gggaag	chr7:73007894-73008155(-)$1	261	242	248	15.7173
GGGAAG	chr5:176734395-176734660(-)$1	265	256	262	15.7173

#otherMatches

#Struct PSSM
abb"""	chr20:17594300-17594508(-)$1	208	38	44	15.7173
:::CCC	chr15:34671256-34671500(-)$1	244	30	36	15.7173
fff]cc	chr3:9956289-9956555(+)$1	266	194	200	15.7173
HHHH{C	chr7:100218585-100218843(-)$1	258	22	28	15.7173
bboooo	chr14:21485027-21485318(-)$1	291	144	150	15.7173
ccc:::	chr20:61599510-61599764(+)$1	254	10	16	14.1956
EEEEE{	chr10:99218309-99218576(-)$1	267	12	18	14.0869
fffff#	chr14:24032498-24032768(-)$1	270	2	8	14.1956
""bb!!	chr1:156219136-156219460(-)$1	324	136	142	14.1956
bb!!ee	chr12:7030670-7030906(+)$1	236	28	34	15.7173
gggggg	chr14:20915270-20915537(-)$1	267	13	19	15.7173
EEEEE{	chr8:145699230-145699474(+)$1	244	7	13	14.1956
dddd[f	chr19:39221646-39221937(-)$1	291	223	229	15.7173
gggggg	chr2:220077094-220077313(-)$1	219	118	124	15.7173
EEELLL	chr16:31201496-31201706(+)$1	210	2	8	14.0869
bb!!gg	chr7:926918-927246(+)$1	328	183	189	15.7173
eee[bb	chr6:31937187-31937446(+)$1	259	49	55	14.0869
eeee[b	chr17:37881867-37882174(+)$1	307	178	184	14.0869
hhhsss	chr22:19318601-19318916(-)$1	315	150	156	15.7173
hha22a	chr3:184052905-184053161(+)$1	256	187	193	15.7173
a]dddd	chr16:89809189-89809445(-)$1	256	185	191	15.7173
ddtttt	chr16:31201336-31201562(+)$1	226	72	78	14.1956
EENNNN	chr10:3821010-3821341(-)$1	331	60	66	14.0869
::eeee	chr1:156219079-156219336(-)$1	257	12	18	14.1956
JJJJEE	chr11:62360767-62361015(-)$1	248	11	17	15.7173
ddd444	chr13:111294636-111294955(-)$1	319	25	31	14.0869
gggggg	chr7:73008077-73008300(-)$1	223	68	74	14.1956
FFFF{E	chr12:57492990-57493290(-)$1	300	12	18	15.7173
lldddd	chrX:153609535-153609838(+)$1	303	62	68	15.7173
cc!!dd	chr3:49719067-49719339(+)$1	272	40	46	15.7173
fff::A	chr3:127790100-127790337(+)$1	237	43	49	14.0869
ccc[gg	chr19:34890874-34891138(+)$1	264	203	209	15.7173
DDDKKA	chr3:184107173-184107503(+)$1	330	83	89	15.7173
gggg%%	chr7:934986-935282(+)$1	296	28	34	14.0869
======	chr16:4740212-4740461(+)$1	249	180	186	14.1956
eeee[b	chr9:117073375-117073629(+)$1	254	121	127	15.7173
HHHHHH	chr19:6751200-6751469(+)$1	269	36	42	15.7173
JJJJJJ	chr16:30016811-30017101(+)$1	290	201	207	14.0869
((((((	chr14:23794626-23794845(+)$1	219	62	68	15.7173
abb"""	chr20:17594343-17594549(-)$1	206	79	85	15.7173
EEEE{G	chr11:725696-725945(+)$1	249	3	9	14.0869
dddd::	chr9:117002399-117002622(+)$1	223	169	175	14.1956
EEEEEB	chr5:179263641-179263929(+)$1	288	91	97	14.1956
}CCC}E	chr22:32007028-32007295(+)$1	267	175	181	14.1956
====22	chr7:73007894-73008155(-)$1	261	242	248	15.7173
CCC}DD	chr5:176734395-176734660(-)$1	265	256	262	15.7173

#DB
(((...	chr20:17594300-17594508(-)$1	1	38	44	15.7173
...(((	chr15:34671256-34671500(-)$1	1	30	36	15.7173
))).))	chr3:9956289-9956555(+)$1	1	194	200	15.7173
((((.(	chr7:100218585-100218843(-)$1	1	22	28	15.7173
((....	chr14:21485027-21485318(-)$1	1	144	150	15.7173
)))...	chr20:61599510-61599764(+)$1	1	10	16	14.1956
(((((.	chr10:99218309-99218576(-)$1	1	12	18	14.0869
(((((.	chr14:24032498-24032768(-)$1	1	2	8	14.1956
..((..	chr1:156219136-156219460(-)$1	1	136	142	14.1956
((..((	chr12:7030670-7030906(+)$1	1	28	34	15.7173
((((((	chr14:20915270-20915537(-)$1	1	13	19	15.7173
(((((.	chr8:145699230-145699474(+)$1	1	7	13	14.1956
((((.(	chr19:39221646-39221937(-)$1	1	223	229	15.7173
))))))	chr2:220077094-220077313(-)$1	1	118	124	15.7173
(((...	chr16:31201496-31201706(+)$1	1	2	8	14.0869
((..((	chr7:926918-927246(+)$1	1	183	189	15.7173
(((.((	chr6:31937187-31937446(+)$1	1	49	55	14.0869
((((.(	chr17:37881867-37882174(+)$1	1	178	184	14.0869
(((...	chr22:19318601-19318916(-)$1	1	150	156	15.7173
)))..)	chr3:184052905-184053161(+)$1	1	187	193	15.7173
).))))	chr16:89809189-89809445(-)$1	1	185	191	15.7173
((....	chr16:31201336-31201562(+)$1	1	72	78	14.1956
((....	chr10:3821010-3821341(-)$1	1	60	66	14.0869
..((((	chr1:156219079-156219336(-)$1	1	12	18	14.1956
((((((	chr11:62360767-62361015(-)$1	1	11	17	15.7173
)))...	chr13:111294636-111294955(-)$1	1	25	31	14.0869
((((((	chr7:73008077-73008300(-)$1	1	68	74	14.1956
((((.(	chr12:57492990-57493290(-)$1	1	12	18	15.7173
..))))	chrX:153609535-153609838(+)$1	1	62	68	15.7173
((..((	chr3:49719067-49719339(+)$1	1	40	46	15.7173
)))..(	chr3:127790100-127790337(+)$1	1	43	49	14.0869
(((.((	chr19:34890874-34891138(+)$1	1	203	209	15.7173
(((..(	chr3:184107173-184107503(+)$1	1	83	89	15.7173
((((..	chr7:934986-935282(+)$1	1	28	34	14.0869
))))))	chr16:4740212-4740461(+)$1	1	180	186	14.1956
((((.(	chr9:117073375-117073629(+)$1	1	121	127	15.7173
((((((	chr19:6751200-6751469(+)$1	1	36	42	15.7173
))))))	chr16:30016811-30017101(+)$1	1	201	207	14.0869
......	chr14:23794626-23794845(+)$1	1	62	68	15.7173
(((...	chr20:17594343-17594549(-)$1	1	79	85	15.7173
((((.(	chr11:725696-725945(+)$1	1	3	9	14.0869
))))..	chr9:117002399-117002622(+)$1	1	169	175	14.1956
((((((	chr5:179263641-179263929(+)$1	1	91	97	14.1956
.))).)	chr22:32007028-32007295(+)$1	1	175	181	14.1956
))))..	chr7:73007894-73008155(-)$1	1	242	248	15.7173
))).))	chr5:176734395-176734660(-)$1	1	256	262	15.7173

#PSSM
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
A : 0.52	C : 0.23	G : 0.21	a : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	

#score	689.9565217391303
#seq	46
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_UTR_m2_run1.nuc.txt

#NT
GUGGGCU	chr9:140174409-140174657(+)$1	248	65	72	12.6417
CUGGGCU	chr5:137782268-137782606(+)$1	338	51	58	16.9701
CAGGGCU	chr17:37076366-37076623(+)$1	257	234	241	13.1641
UUGGGCU	chr14:65405889-65406187(-)$1	298	172	179	12.6417
CUGGUCU	chr9:136198218-136198601(-)$1	383	150	157	13.0149
CUGUGCU	chr16:70191180-70191423(+)$1	243	108	115	12.9402
CAGGGCU	chr9:136628141-136628436(-)$1	295	222	229	13.1641
CUGAGCU	chr17:46137813-46138036(+)$1	223	9	16	12.9402
CUGGGGU	chr5:78075990-78076246(-)$1	256	1	8	12.5671
CUGGGCC	chr8:143817797-143818052(+)$1	255	43	50	13.4626
UUGGGCU	chr3:39136790-39137064(+)$1	274	12	19	12.6417
CUCGGCU	chr17:40556461-40556709(-)$1	248	68	75	12.4179
CUGGGCC	chr11:66044228-66044465(+)$1	237	109	116	13.4626
CUGGCCU	chr2:220084436-220084795(-)$1	359	149	156	13.0895
CUGGGGU	chr12:50156810-50157071(+)$1	261	67	74	12.5671
CUGGGCU	chr17:75495708-75495955(+)$1	247	81	88	16.9701
CUGGGCC	chr11:65179020-65179288(+)$1	268	49	56	13.4626
CUGUGCU	chr3:9848129-9848363(+)$1	234	39	46	12.9402
CUGGACU	chr5:172377748-172377972(+)$1	224	5	12	13.0895
CUGGUCU	chr11:770754-770996(-)$1	242	213	220	13.0149
CUGGGAU	chr1:55317230-55317461(-)$1	231	109	116	12.4925
CUGGACU	chr17:3513197-3513468(-)$1	271	101	108	13.0895
CUGGGCC	chr16:4561910-4562165(-)$1	255	17	24	13.4626
CUGGGCC	chr5:154194016-154194266(+)$1	250	127	134	13.4626
CUGGCCU	chr11:46693869-46694118(+)$1	249	228	235	13.0895
CUGAGCU	chr1:29652667-29652924(+)$1	257	145	152	12.9402
cugggau	chr19:11256985-11257242(-)$1	257	49	56	12.4925
CUGGACU	chr10:3821393-3821712(-)$1	319	188	195	13.0895
CUGUGCU	chr17:74078730-74078968(-)$1	238	110	117	12.9402
CUCGGCU	chr16:87864338-87864594(-)$1	256	67	74	12.4179
CUGGGCC	chr11:64621341-64621648(-)$1	307	0	7	13.4626
CUGGGCU	chr16:87865414-87865638(-)$1	224	186	193	16.9701
gugggcu	chr9:131910042-131910315(+)$1	273	216	223	12.6417
CUGGACU	chr16:68294745-68295022(+)$1	277	56	63	13.0895
cuaggcu	chr17:26654086-26654316(+)$1	230	136	143	12.3432
CUGGGCA	chr2:73453355-73453641(+)$1	286	247	254	12.8656
CUGGGCU	chr16:87863686-87863924(-)$1	238	222	229	16.9701
CUGGUCU	chr19:1497264-1497609(+)$1	345	238	245	13.0149
cagggcu	chr16:30363209-30363482(-)$1	273	32	39	13.1641
CUGUGCU	chr12:50158270-50158484(+)$1	214	158	165	12.9402
CUGGGCU	chr9:140003103-140003377(+)$1	274	61	68	16.9701
CAGGGCU	chr4:183812195-183812465(-)$1	270	149	156	13.1641
CUGGCCU	chr9:137328529-137328791(+)$1	262	28	35	13.0895
CUGAGCU	chr9:134453774-134454044(-)$1	270	12	19	12.9402
CUGGGCU	chr16:71961698-71961971(+)$1	273	140	147	16.9701
CAGGGCU	chr19:12810071-12810328(-)$1	257	134	141	13.1641
CAGGGCU	chr11:61213763-61214077(+)$1	314	201	208	13.1641
CUGGGCU	chr2:220151334-220151655(+)$1	321	224	231	16.9701
CUUGGCU	chr16:46963741-46963995(+)$1	254	223	230	12.3432
CUGGGCG	chr9:140174537-140174812(+)$1	275	110	117	12.8656
CUGGGGU	chr16:4562160-4562426(-)$1	266	146	153	12.5671
CUGGGCC	chr22:41641989-41642295(-)$1	306	16	23	13.4626
CUGGGCU	chr11:74916547-74916818(+)$1	271	138	145	16.9701
CUGAGCU	chr5:175954597-175954850(-)$1	253	69	76	12.9402
CUGGCCU	chr2:97498909-97499190(+)$1	281	94	101	13.0895
CUGGGCC	chr20:61598925-61599171(+)$1	246	135	142	13.4626
CUGGGCU	chr16:23585091-23585337(+)$1	246	16	23	16.9701
CAGGGCU	chr17:79825944-79826297(-)$1	353	230	237	13.1641
CUGGGCU	chr16:31142726-31143044(-)$1	318	104	111	16.9701
CAGGGCU	chr20:36757227-36757554(-)$1	327	296	303	13.1641
CUGGGCC	chr19:8468739-8468999(+)$1	260	109	116	13.4626
CUGGGCU	chr2:71214877-71215118(-)$1	241	163	170	16.9701
CUGGGCU	chr9:95883923-95884245(-)$1	322	294	301	16.9701
CUGCGCU	chr11:63971614-63971949(+)$1	335	136	143	12.7164
GUGGGCU	chr20:43571039-43571428(-)$1	389	7	14	12.6417
UUGGGCU	chr19:48886133-48886399(-)$1	266	31	38	12.6417

#otherMatches

#Struct PSSM
ffffffF	chr1:15755441-15755696(+)$1	255	27	34	16.9701
=[eeeee	chr9:140174409-140174657(+)$1	248	65	72	12.6417
mmmcccc	chr5:137782268-137782606(+)$1	338	51	58	16.9701
HHHGGGG	chr17:37076366-37076623(+)$1	257	234	241	13.1641
::GGGGG	chr14:65405889-65406187(-)$1	298	172	179	12.6417
HHHHH::	chr9:136198218-136198601(-)$1	383	150	157	13.0149
fff]eee	chr16:70191180-70191423(+)$1	243	108	115	12.9402
FFFFFF}	chr9:136628141-136628436(-)$1	295	222	229	13.1641
mbb]ddd	chr17:46137813-46138036(+)$1	223	9	16	12.9402
::EEEEE	chr5:78075990-78076246(-)$1	256	1	8	12.5671
eeeebb[	chr8:143817797-143818052(+)$1	255	43	50	13.4626
iiiiqqq	chr3:39136790-39137064(+)$1	274	12	19	12.6417
hhhhhhh	chr17:40556461-40556709(-)$1	248	68	75	12.4179
bdddd[d	chr11:66044228-66044465(+)$1	237	109	116	13.4626
ffff333	chr2:220084436-220084795(-)$1	359	149	156	13.0895
%gggggg	chr12:50156810-50157071(+)$1	261	67	74	12.5671
ffffff!	chr17:75495708-75495955(+)$1	247	81	88	16.9701
EEEEDDD	chr11:65179020-65179288(+)$1	268	49	56	13.4626
eeee]bb	chr3:9848129-9848363(+)$1	234	39	46	12.9402
FFKKCCC	chr5:172377748-172377972(+)$1	224	5	12	13.0895
eeee]cc	chr11:770754-770996(-)$1	242	213	220	13.0149
oodddd:	chr1:55317230-55317461(-)$1	231	109	116	12.4925
[cccooo	chr17:3513197-3513468(-)$1	271	101	108	13.0895
cc!!ccc	chr16:4561910-4562165(-)$1	255	17	24	13.4626
55fffff	chr5:154194016-154194266(+)$1	250	127	134	13.4626
EE~~~~C	chr11:46693869-46694118(+)$1	249	228	235	13.0895
3eeeee:	chr1:29652667-29652924(+)$1	257	145	152	12.9402
oeeeee:	chr19:11256985-11257242(-)$1	257	49	56	12.4925
[cccnnn	chr10:3821393-3821712(-)$1	319	188	195	13.0895
dddddd2	chr17:74078730-74078968(-)$1	238	110	117	12.9402
eeennnn	chr16:87864338-87864594(-)$1	256	67	74	12.4179
:::CCCK	chr11:64621341-64621648(-)$1	307	0	7	13.4626
eeeeeoo	chr16:87865414-87865638(-)$1	224	186	193	16.9701
ddHHHHH	chr9:131910042-131910315(+)$1	273	216	223	12.6417
ccooooo	chr16:68294745-68295022(+)$1	277	56	63	13.0895
dd]ccc4	chr17:26654086-26654316(+)$1	230	136	143	12.3432
}EEEEEY	chr2:73453355-73453641(+)$1	286	247	254	12.8656
FFFFBBC	chr16:87863686-87863924(-)$1	238	222	229	16.9701
EEEE:::	chr19:1497264-1497609(+)$1	345	238	245	13.0149
ffffffm	chr16:30363209-30363482(-)$1	273	32	39	13.1641
dd!!bbn	chr12:50158270-50158484(+)$1	214	158	165	12.9402
ggggggg	chr9:140003103-140003377(+)$1	274	61	68	16.9701
dddd]a4	chr4:183812195-183812465(-)$1	270	149	156	13.1641
HHHHHUU	chr9:137328529-137328791(+)$1	262	28	35	13.0895
c[dddd"	chr9:134453774-134454044(-)$1	270	12	19	12.9402
eeeebbr	chr16:71961698-71961971(+)$1	273	140	147	16.9701
Cddddff	chr19:12810071-12810328(-)$1	257	134	141	13.1641
eeee"""	chr11:61213763-61214077(+)$1	314	201	208	13.1641
dlllddd	chr2:220151334-220151655(+)$1	321	224	231	16.9701
ggggggD	chr16:46963741-46963995(+)$1	254	223	230	12.3432
mmeeeee	chr9:140174537-140174812(+)$1	275	110	117	12.8656
fffff!!	chr16:4562160-4562426(-)$1	266	146	153	12.5671
g[ccc!!	chr22:41641989-41642295(-)$1	306	16	23	13.4626
KKJJJJJ	chr11:74916547-74916818(+)$1	271	138	145	16.9701
KKDDDD{	chr5:175954597-175954850(-)$1	253	69	76	12.9402
f]eeeee	chr2:97498909-97499190(+)$1	281	94	101	13.0895
iiiiiii	chr20:61598925-61599171(+)$1	246	135	142	13.4626
ffffffs	chr16:23585091-23585337(+)$1	246	16	23	16.9701
33fffff	chr17:79825944-79826297(-)$1	353	230	237	13.1641
gggggg2	chr16:31142726-31143044(-)$1	318	104	111	16.9701
FFFFF::	chr20:36757227-36757554(-)$1	327	296	303	13.1641
ggggggg	chr19:8468739-8468999(+)$1	260	109	116	13.4626
[dddd[e	chr2:71214877-71215118(-)$1	241	163	170	16.9701
c]dddd]	chr9:95883923-95884245(-)$1	322	294	301	16.9701
$$ccc[b	chr11:63971614-63971949(+)$1	335	136	143	12.7164
mmdddd:	chr20:43571039-43571428(-)$1	389	7	14	12.6417
====bb!	chr19:48886133-48886399(-)$1	266	31	38	12.6417

#DB
))))))(	chr1:15755441-15755696(+)$1	1	27	34	16.9701
(.(((((	chr9:140174409-140174657(+)$1	1	65	72	12.6417
...))))	chr5:137782268-137782606(+)$1	1	51	58	16.9701
)))))))	chr17:37076366-37076623(+)$1	1	234	241	13.1641
..)))))	chr14:65405889-65406187(-)$1	1	172	179	12.6417
(((((..	chr9:136198218-136198601(-)$1	1	150	157	13.0149
))).)))	chr16:70191180-70191423(+)$1	1	108	115	12.9402
)))))).	chr9:136628141-136628436(-)$1	1	222	229	13.1641
.)).)))	chr17:46137813-46138036(+)$1	1	9	16	12.9402
..(((((	chr5:78075990-78076246(-)$1	1	1	8	12.5671
((((((.	chr8:143817797-143818052(+)$1	1	43	50	13.4626
((((...	chr3:39136790-39137064(+)$1	1	12	19	12.6417
(((((((	chr17:40556461-40556709(-)$1	1	68	75	12.4179
(((((.(	chr11:66044228-66044465(+)$1	1	109	116	13.4626
))))...	chr2:220084436-220084795(-)$1	1	149	156	13.0895
.((((((	chr12:50156810-50157071(+)$1	1	67	74	12.5671
((((((.	chr17:75495708-75495955(+)$1	1	81	88	16.9701
(((((((	chr11:65179020-65179288(+)$1	1	49	56	13.4626
)))).))	chr3:9848129-9848363(+)$1	1	39	46	12.9402
((..(((	chr5:172377748-172377972(+)$1	1	5	12	13.0895
)))).))	chr11:770754-770996(-)$1	1	213	220	13.0149
..)))).	chr1:55317230-55317461(-)$1	1	109	116	12.4925
.(((...	chr17:3513197-3513468(-)$1	1	101	108	13.0895
((..(((	chr16:4561910-4562165(-)$1	1	17	24	13.4626
..)))))	chr5:154194016-154194266(+)$1	1	127	134	13.4626
))....)	chr11:46693869-46694118(+)$1	1	228	235	13.0895
.))))).	chr1:29652667-29652924(+)$1	1	145	152	12.9402
.))))).	chr19:11256985-11257242(-)$1	1	49	56	12.4925
.(((...	chr10:3821393-3821712(-)$1	1	188	195	13.0895
)))))).	chr17:74078730-74078968(-)$1	1	110	117	12.9402
(((....	chr16:87864338-87864594(-)$1	1	67	74	12.4179
...(((.	chr11:64621341-64621648(-)$1	1	0	7	13.4626
(((((..	chr16:87865414-87865638(-)$1	1	186	193	16.9701
)))))))	chr9:131910042-131910315(+)$1	1	216	223	12.6417
((.....	chr16:68294745-68295022(+)$1	1	56	63	13.0895
)).))).	chr17:26654086-26654316(+)$1	1	136	143	12.3432
.))))).	chr2:73453355-73453641(+)$1	1	247	254	12.8656
)))))))	chr16:87863686-87863924(-)$1	1	222	229	16.9701
((((...	chr19:1497264-1497609(+)$1	1	238	245	13.0149
((((((.	chr16:30363209-30363482(-)$1	1	32	39	13.1641
((..((.	chr12:50158270-50158484(+)$1	1	158	165	12.9402
)))))))	chr9:140003103-140003377(+)$1	1	61	68	16.9701
)))).).	chr4:183812195-183812465(-)$1	1	149	156	13.1641
(((((..	chr9:137328529-137328791(+)$1	1	28	35	13.0895
(.((((.	chr9:134453774-134454044(-)$1	1	12	19	12.9402
((((((.	chr16:71961698-71961971(+)$1	1	140	147	16.9701
)((((((	chr19:12810071-12810328(-)$1	1	134	141	13.1641
((((...	chr11:61213763-61214077(+)$1	1	201	208	13.1641
(...)))	chr2:220151334-220151655(+)$1	1	224	231	16.9701
)))))))	chr16:46963741-46963995(+)$1	1	223	230	12.3432
..)))))	chr9:140174537-140174812(+)$1	1	110	117	12.8656
(((((..	chr16:4562160-4562426(-)$1	1	146	153	12.5671
(.(((..	chr22:41641989-41642295(-)$1	1	16	23	13.4626
..(((((	chr11:74916547-74916818(+)$1	1	138	145	16.9701
..((((.	chr5:175954597-175954850(-)$1	1	69	76	12.9402
).)))))	chr2:97498909-97499190(+)$1	1	94	101	13.0895
)))))))	chr20:61598925-61599171(+)$1	1	135	142	13.4626
((((((.	chr16:23585091-23585337(+)$1	1	16	23	16.9701
..)))))	chr17:79825944-79826297(-)$1	1	230	237	13.1641
)))))).	chr16:31142726-31143044(-)$1	1	104	111	16.9701
)))))..	chr20:36757227-36757554(-)$1	1	296	303	13.1641
)))))))	chr19:8468739-8468999(+)$1	1	109	116	13.4626
.((((.(	chr2:71214877-71215118(-)$1	1	163	170	16.9701
).)))).	chr9:95883923-95884245(-)$1	1	294	301	16.9701
..(((.(	chr11:63971614-63971949(+)$1	1	136	143	12.7164
..)))).	chr20:43571039-43571428(-)$1	1	7	14	12.6417
))))((.	chr19:48886133-48886399(-)$1	1	31	38	12.6417

#PSSM
C : 0.86	U : 0.04	c : 0.04	G : 0.02	g : 0.01	
U : 0.83	A : 0.10	u : 0.04	a : 0.01	
G : 0.89	g : 0.04	C : 0.02	a : 0.01	U : 0.01	
G : 0.80	U : 0.05	A : 0.05	g : 0.05	C : 0.01	
G : 0.77	C : 0.05	A : 0.05	g : 0.05	U : 0.04	
C : 0.88	G : 0.04	c : 0.04	A : 0.01	a : 0.01	
U : 0.77	C : 0.13	u : 0.05	A : 0.01	G : 0.01	

#score	920.880597014926
#seq	67
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_transcript_m3_run2.nuc.txt

#NT
gcuggag	chr17:36872285-36872541(+)$1	256	163	170	13.7118
GCUGGGG	chr1:27676734-27676979(+)$1	245	72	79	17.2711
GCUGGGU	chr21:45735941-45736237(+)$1	296	51	58	13.4576
CCUGGGG	chrX:153627651-153627916(+)$1	265	198	205	13.8813
gcugggg	chr1:19200947-19201224(-)$1	277	92	99	17.2711
GCUGGCG	chr20:17601354-17601583(-)$1	229	4	11	13.3728
GCUGGUG	chr20:17923755-17923979(-)$1	224	27	34	13.4576
GCUGGGG	chr19:39334447-39334744(-)$1	297	143	150	17.2711
ggugggg	chr21:47565391-47565643(-)$1	252	12	19	12.9491
GCUGGAG	chr12:6619465-6619687(+)$1	222	111	118	13.7118
GCUGGGG	chr9:139730048-139730323(+)$1	275	86	93	17.2711
GCUGGGC	chr3:52838496-52838789(+)$1	293	50	57	13.4576
ucugggg	chr16:71956258-71956504(+)$1	246	60	67	13.5423
GCUGGGA	chr1:169525974-169526259(-)$1	285	194	201	13.2881
CCUGGGG	chr19:16974342-16974600(+)$1	258	104	111	13.8813
GCUGGGG	chr7:5434121-5434384(-)$1	263	52	59	17.2711
GCUGGGG	chr16:89805438-89805698(+)$1	260	57	64	17.2711
CCUGGGG	chr19:10226636-10226919(-)$1	283	101	108	13.8813
GCUGGGG	chr14:23533544-23533859(-)$1	315	228	235	17.2711
GCUGGAG	chr14:103570928-103571177(+)$1	249	22	29	13.7118
GCUGGAG	chr14:23444215-23444482(-)$1	267	115	122	13.7118
GCUGUGG	chr16:30080473-30080726(+)$1	253	84	91	13.0338
GCUGGGU	chr6:28872342-28872608(-)$1	266	103	110	13.4576
GCUGAGG	chr16:29708353-29708636(+)$1	283	47	54	13.2881
GCUGGGG	chr16:89961303-89961560(+)$1	257	90	97	17.2711
GGUGGGG	chr20:31606678-31606909(+)$1	231	41	48	12.9491
CCUGGGG	chr19:15793043-15793298(+)$1	255	39	46	13.8813
GCUGGGG	chr6:160509981-160510233(+)$1	252	117	124	17.2711
GCUGGGC	chr16:89911552-89911831(+)$1	279	34	41	13.4576
GCUGGGU	chr21:46276175-46276415(-)$1	240	81	88	13.4576
CCUGGGG	chr20:62595954-62596222(-)$1	268	91	98	13.8813
GCUGGGG	chr17:7011792-7012036(-)$1	244	62	69	17.2711
GCUGAGG	chr10:95360158-95360404(-)$1	246	122	129	13.2881
UCUGGGG	chr17:21215309-21215555(+)$1	246	105	112	13.5423
UCUGGGG	chr16:72054891-72055127(+)$1	236	141	148	13.5423
CCUGGGG	chr20:33594278-33594534(-)$1	256	224	231	13.8813
GCUGGUG	chr20:17600271-17600562(-)$1	291	63	70	13.4576
GCUGGGU	chr20:17606137-17606423(-)$1	286	26	33	13.4576
GCUGGGG	chr12:57627193-57627433(+)$1	240	10	17	17.2711
GGUGGGG	chr16:88719726-88719959(-)$1	233	222	229	12.9491
GCUGGGG	chr20:60908450-60908682(-)$1	232	86	93	17.2711
GCUGUGG	chr6:170064593-170064867(-)$1	274	168	175	13.0338
GCUGGGC	chr18:683242-683546(-)$1	304	26	33	13.4576
GCUGGUG	chr17:72769068-72769334(-)$1	266	60	67	13.4576
GCUGGGG	chr8:25246406-25246716(+)$1	310	105	112	17.2711
ACUGGGG	chr9:117068652-117068886(+)$1	234	69	76	13.4576
GCUGGCG	chr12:133148699-133148974(+)$1	275	13	20	13.3728
GCUGGAG	chr10:7763485-7763702(+)$1	217	53	60	13.7118
GCUGGGA	chr7:1529220-1529498(-)$1	278	73	80	13.2881
GCUGGGG	chr14:105240210-105240458(-)$1	248	216	223	17.2711
CCUGGGG	chr17:43013620-43013896(-)$1	276	127	134	13.8813
GCUGGGC	chr3:53856556-53856816(-)$1	260	49	56	13.4576
GGUGGGG	chr20:36030691-36030933(+)$1	242	46	53	12.9491
GCUGAGG	chr2:242437672-242437917(-)$1	245	11	18	13.2881
GCUGGAG	chr12:6619386-6619613(+)$1	227	190	197	13.7118
GCUGAGG	chr19:46201651-46201897(+)$1	246	101	108	13.2881
GCUGGGG	chr1:156351672-156351950(+)$1	278	40	47	17.2711
gcugagg	chr16:71956107-71956362(+)$1	255	72	79	13.2881

#otherMatches

#Struct PSSM
::EEEEE	chr19:19758229-19758480(-)$1	251	199	206	13.4576
EEEEEEE	chr17:36872285-36872541(+)$1	256	163	170	13.7118
iiiiiii	chr1:27676734-27676979(+)$1	245	72	79	17.2711
eeeeeee	chr21:45735941-45736237(+)$1	296	51	58	13.4576
66ddddb	chrX:153627651-153627916(+)$1	265	198	205	13.8813
ee"""dd	chr1:19200947-19201224(-)$1	277	92	99	17.2711
:DDDD{D	chr20:17601354-17601583(-)$1	229	4	11	13.3728
gggssss	chr20:17923755-17923979(-)$1	224	27	34	13.4576
bb[ffff	chr19:39334447-39334744(-)$1	297	143	150	17.2711
BB:gggg	chr21:47565391-47565643(-)$1	252	12	19	12.9491
====[bb	chr12:6619465-6619687(+)$1	222	111	118	13.7118
JJJJJ}B	chr9:139730048-139730323(+)$1	275	86	93	17.2711
eeeiiii	chr3:52838496-52838789(+)$1	293	50	57	13.4576
EE{CCCL	chr16:71956258-71956504(+)$1	246	60	67	13.5423
FFF:hhh	chr1:169525974-169526259(-)$1	285	194	201	13.2881
555ccce	chr19:16974342-16974600(+)$1	258	104	111	13.8813
dddFFFF	chr7:5434121-5434384(-)$1	263	52	59	17.2711
=====[f	chr16:89805438-89805698(+)$1	260	57	64	17.2711
e::::FF	chr19:10226636-10226919(-)$1	283	101	108	13.8813
eeeeemm	chr14:23533544-23533859(-)$1	315	228	235	17.2711
=======	chr14:103570928-103571177(+)$1	249	22	29	13.7118
cc[ffff	chr14:23444215-23444482(-)$1	267	115	122	13.7118
gggggg2	chr16:30080473-30080726(+)$1	253	84	91	13.0338
ffffff[	chr6:28872342-28872608(-)$1	266	103	110	13.4576
ccmmmmc	chr16:29708353-29708636(+)$1	283	47	54	13.2881
d!!eeee	chr16:89961303-89961560(+)$1	257	90	97	17.2711
:dddd[c	chr20:31606678-31606909(+)$1	231	41	48	12.9491
fffffrr	chr19:15793043-15793298(+)$1	255	39	46	13.8813
tttffff	chr6:160509981-160510233(+)$1	252	117	124	17.2711
GGGGG::	chr16:89911552-89911831(+)$1	279	34	41	13.4576
BBKKDDD	chr21:46276175-46276415(-)$1	240	81	88	13.4576
cc]gggg	chr20:62595954-62596222(-)$1	268	91	98	13.8813
cccffff	chr17:7011792-7012036(-)$1	244	62	69	17.2711
d]bb666	chr10:95360158-95360404(-)$1	246	122	129	13.2881
:::eeee	chr17:21215309-21215555(+)$1	246	105	112	13.5423
GGGGGGG	chr16:72054891-72055127(+)$1	236	141	148	13.5423
GGGGGGG	chr20:33594278-33594534(-)$1	256	224	231	13.8813
$$$dddd	chr20:17600271-17600562(-)$1	291	63	70	13.4576
nnnnnee	chr20:17606137-17606423(-)$1	286	26	33	13.4576
CCCLLLC	chr12:57627193-57627433(+)$1	240	10	17	17.2711
mmmffff	chr16:88719726-88719959(-)$1	233	222	229	12.9491
d[fffff	chr20:60908450-60908682(-)$1	232	86	93	17.2711
ccc[ddd	chr6:170064593-170064867(-)$1	274	168	175	13.0338
BB{A{GG	chr18:683242-683546(-)$1	304	26	33	13.4576
eeeeqqq	chr17:72769068-72769334(-)$1	266	60	67	13.4576
bbggggg	chr8:25246406-25246716(+)$1	310	105	112	17.2711
::EEEEE	chr9:117068652-117068886(+)$1	234	69	76	13.4576
GGGGG{B	chr12:133148699-133148974(+)$1	275	13	20	13.3728
ccc"""e	chr10:7763485-7763702(+)$1	217	53	60	13.7118
eeeeell	chr7:1529220-1529498(-)$1	278	73	80	13.2881
==]bb==	chr14:105240210-105240458(-)$1	248	216	223	17.2711
gggggg[	chr17:43013620-43013896(-)$1	276	127	134	13.8813
FFFFFF:	chr3:53856556-53856816(-)$1	260	49	56	13.4576
hhhhhhh	chr20:36030691-36030933(+)$1	242	46	53	12.9491
eeeeemm	chr2:242437672-242437917(-)$1	245	11	18	13.2881
====[bb	chr12:6619386-6619613(+)$1	227	190	197	13.7118
ddd[iii	chr19:46201651-46201897(+)$1	246	101	108	13.2881
lleeeee	chr1:156351672-156351950(+)$1	278	40	47	17.2711
b!!dddd	chr16:71956107-71956362(+)$1	255	72	79	13.2881

#DB
..)))))	chr19:19758229-19758480(-)$1	1	199	206	13.4576
)))))))	chr17:36872285-36872541(+)$1	1	163	170	13.7118
(((((((	chr1:27676734-27676979(+)$1	1	72	79	17.2711
(((((((	chr21:45735941-45736237(+)$1	1	51	58	13.4576
..))))(	chrX:153627651-153627916(+)$1	1	198	205	13.8813
((...((	chr1:19200947-19201224(-)$1	1	92	99	17.2711
.((((.(	chr20:17601354-17601583(-)$1	1	4	11	13.3728
(((....	chr20:17923755-17923979(-)$1	1	27	34	13.4576
((.((((	chr19:39334447-39334744(-)$1	1	143	150	17.2711
((.((((	chr21:47565391-47565643(-)$1	1	12	19	12.9491
((((.((	chr12:6619465-6619687(+)$1	1	111	118	13.7118
))))).)	chr9:139730048-139730323(+)$1	1	86	93	17.2711
(((((((	chr3:52838496-52838789(+)$1	1	50	57	13.4576
((.(((.	chr16:71956258-71956504(+)$1	1	60	67	13.5423
(((.(((	chr1:169525974-169526259(-)$1	1	194	201	13.2881
...))))	chr19:16974342-16974600(+)$1	1	104	111	13.8813
)))((((	chr7:5434121-5434384(-)$1	1	52	59	17.2711
(((((.(	chr16:89805438-89805698(+)$1	1	57	64	17.2711
)....((	chr19:10226636-10226919(-)$1	1	101	108	13.8813
(((((..	chr14:23533544-23533859(-)$1	1	228	235	17.2711
)))))))	chr14:103570928-103571177(+)$1	1	22	29	13.7118
((.((((	chr14:23444215-23444482(-)$1	1	115	122	13.7118
)))))).	chr16:30080473-30080726(+)$1	1	84	91	13.0338
((((((.	chr6:28872342-28872608(-)$1	1	103	110	13.4576
((....)	chr16:29708353-29708636(+)$1	1	47	54	13.2881
(..((((	chr16:89961303-89961560(+)$1	1	90	97	17.2711
.((((.(	chr20:31606678-31606909(+)$1	1	41	48	12.9491
(((((..	chr19:15793043-15793298(+)$1	1	39	46	13.8813
...))))	chr6:160509981-160510233(+)$1	1	117	124	17.2711
(((((..	chr16:89911552-89911831(+)$1	1	34	41	13.4576
((..(((	chr21:46276175-46276415(-)$1	1	81	88	13.4576
)).))))	chr20:62595954-62596222(-)$1	1	91	98	13.8813
)))((((	chr17:7011792-7012036(-)$1	1	62	69	17.2711
).))...	chr10:95360158-95360404(-)$1	1	122	129	13.2881
...((((	chr17:21215309-21215555(+)$1	1	105	112	13.5423
)))))))	chr16:72054891-72055127(+)$1	1	141	148	13.5423
)))))))	chr20:33594278-33594534(-)$1	1	224	231	13.8813
...((((	chr20:17600271-17600562(-)$1	1	63	70	13.4576
.....))	chr20:17606137-17606423(-)$1	1	26	33	13.4576
(((...(	chr12:57627193-57627433(+)$1	1	10	17	17.2711
...))))	chr16:88719726-88719959(-)$1	1	222	229	12.9491
(.(((((	chr20:60908450-60908682(-)$1	1	86	93	17.2711
(((.(((	chr6:170064593-170064867(-)$1	1	168	175	13.0338
((.(.((	chr18:683242-683546(-)$1	1	26	33	13.4576
((((...	chr17:72769068-72769334(-)$1	1	60	67	13.4576
(((((((	chr8:25246406-25246716(+)$1	1	105	112	17.2711
..(((((	chr9:117068652-117068886(+)$1	1	69	76	13.4576
(((((.(	chr12:133148699-133148974(+)$1	1	13	20	13.3728
(((...(	chr10:7763485-7763702(+)$1	1	53	60	13.7118
(((((..	chr7:1529220-1529498(-)$1	1	73	80	13.2881
)).))((	chr14:105240210-105240458(-)$1	1	216	223	17.2711
((((((.	chr17:43013620-43013896(-)$1	1	127	134	13.8813
((((((.	chr3:53856556-53856816(-)$1	1	49	56	13.4576
)))))))	chr20:36030691-36030933(+)$1	1	46	53	12.9491
(((((..	chr2:242437672-242437917(-)$1	1	11	18	13.2881
((((.((	chr12:6619386-6619613(+)$1	1	190	197	13.7118
(((.(((	chr19:46201651-46201897(+)$1	1	101	108	13.2881
..)))))	chr1:156351672-156351950(+)$1	1	40	47	17.2711
(..((((	chr16:71956107-71956362(+)$1	1	72	79	13.2881

#PSSM
G : 0.72	C : 0.11	g : 0.06	A : 0.03	U : 0.03	u : 0.01	
C : 0.86	c : 0.06	G : 0.05	g : 0.01	
U : 0.91	u : 0.08	
G : 0.91	g : 0.08	
G : 0.81	g : 0.06	A : 0.06	U : 0.03	a : 0.01	
G : 0.74	A : 0.08	g : 0.06	U : 0.05	C : 0.03	a : 0.01	
G : 0.74	g : 0.08	U : 0.06	C : 0.06	A : 0.03	

#score	851.7118644067793
#seq	59
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_CDS_m3_run1.nuc.txt

#NT
CUGCC	chr11:14666373-14666617(+)$1	244	15	20	15.0000
CUGCC	chr9:101983855-101984087(-)$1	232	133	138	15.0000
CUGCC	chr3:53275080-53275373(-)$1	293	236	241	15.0000
CUGCC	chr6:28219424-28219755(-)$1	331	309	314	15.0000
CUGCC	chr17:54991166-54991413(-)$1	247	108	113	15.0000
CUGCC	chr19:50412682-50412928(-)$1	246	171	176	15.0000
CUGCC	chr15:72491921-72492157(-)$1	236	13	18	15.0000
CUGCC	chr8:103664155-103664382(-)$1	227	196	201	15.0000
CUGCC	chr11:119206891-119207153(+)$1	262	86	91	15.0000
CUGCC	chr1:228645200-228645441(-)$1	241	101	106	15.0000
CUGCC	chr19:54682453-54682712(-)$1	259	209	214	15.0000
CUGCC	chr1:225600134-225600363(-)$1	229	196	201	15.0000
CUGCC	chr11:209031-209277(+)$1	246	123	128	15.0000
CUGCC	chr1:36752561-36752812(+)$1	251	128	133	15.0000
CUGCC	chr12:49432493-49432723(-)$1	230	6	11	15.0000
CUGCC	chr1:20987610-20987874(-)$1	264	79	84	15.0000
CUGCC	chr17:76210257-76210523(+)$1	266	162	167	15.0000
CUGCC	chr19:14523673-14523939(-)$1	266	171	176	15.0000
cugcc	chr19:41858745-41858998(-)$1	253	73	78	15.0000
CUGCC	chr2:70527945-70528236(-)$1	291	107	112	15.0000
CUGCC	chr3:50645000-50645218(-)$1	218	120	125	15.0000
CUGCC	chr11:34492829-34493077(+)$1	248	39	44	15.0000
CUGCC	chr2:10188280-10188518(+)$1	238	210	215	15.0000
CUGCC	chr22:39910208-39910461(+)$1	253	214	219	15.0000
CUGCC	chr1:47746206-47746512(-)$1	306	162	167	15.0000
CUGCC	chr11:289746-290012(+)$1	266	104	109	15.0000
CUGCC	chr6:30691013-30691228(+)$1	215	209	214	15.0000
CUGCC	chr12:69652423-69652699(+)$1	276	26	31	15.0000
CUGCC	chr20:376932-377174(+)$1	242	184	189	15.0000
CUGCC	chr9:138831466-138831699(-)$1	233	54	59	15.0000
CUGCC	chr16:89966972-89967251(+)$1	279	173	178	15.0000
CUGCC	chr20:3102166-3102453(-)$1	287	0	5	15.0000
CUGCC	chr19:14627537-14627774(-)$1	237	156	161	15.0000
CUGCC	chr22:19865496-19865765(-)$1	269	235	240	15.0000
CUGCC	chr22:19028595-19028898(-)$1	303	40	45	15.0000
CUGCC	chr13:20356634-20356883(-)$1	249	228	233	15.0000
CUGCC	chr7:142561943-142562235(+)$1	292	268	273	15.0000
CUGCC	chr14:23344981-23345255(+)$1	274	231	236	15.0000
CUGCC	chr9:140137386-140137611(+)$1	225	185	190	15.0000
CUGCC	chr6:16129474-16129711(+)$1	237	153	158	15.0000
CUGCC	chr19:2736929-2737178(-)$1	249	112	117	15.0000
CUGCC	chr22:21799106-21799364(+)$1	258	38	43	15.0000
CUGCC	chr17:40265653-40265908(-)$1	255	39	44	15.0000
CUGCC	chr19:18499277-18499513(+)$1	236	170	175	15.0000
CUGCC	chr11:58391577-58391819(+)$1	242	164	169	15.0000
CUGCC	chr4:77969441-77969692(-)$1	251	121	126	15.0000
CUGCC	chr7:6080465-6080681(-)$1	216	40	45	15.0000
CUGCC	chr1:40041444-40041676(-)$1	232	178	183	15.0000
CUGCC	chr16:67197133-67197396(+)$1	263	31	36	15.0000
CUGCC	chr8:103663628-103663898(-)$1	270	157	162	15.0000
CUGCC	chr1:167381262-167381526(+)$1	264	32	37	15.0000
CUGCC	chr11:14665748-14665977(+)$1	229	25	30	15.0000

#otherMatches

#Struct PSSM
eeeeo	chr15:49036368-49036612(-)$1	244	106	111	15.0000
cc]ff	chr11:14666373-14666617(+)$1	244	15	20	15.0000
c[fff	chr9:101983855-101984087(-)$1	232	133	138	15.0000
ooooo	chr3:53275080-53275373(-)$1	293	236	241	15.0000
cccc2	chr6:28219424-28219755(-)$1	331	309	314	15.0000
b]ccc	chr17:54991166-54991413(-)$1	247	108	113	15.0000
fffff	chr19:50412682-50412928(-)$1	246	171	176	15.0000
eee:G	chr15:72491921-72492157(-)$1	236	13	18	15.0000
GGG@@	chr8:103664155-103664382(-)$1	227	196	201	15.0000
eeeeE	chr11:119206891-119207153(+)$1	262	86	91	15.0000
nnnnd	chr1:228645200-228645441(-)$1	241	101	106	15.0000
dccce	chr19:54682453-54682712(-)$1	259	209	214	15.0000
DDDDY	chr1:225600134-225600363(-)$1	229	196	201	15.0000
2dddd	chr11:209031-209277(+)$1	246	123	128	15.0000
:::::	chr1:36752561-36752812(+)$1	251	128	133	15.0000
mmddd	chr12:49432493-49432723(-)$1	230	6	11	15.0000
eeeee	chr1:20987610-20987874(-)$1	264	79	84	15.0000
]dddd	chr17:76210257-76210523(+)$1	266	162	167	15.0000
ee[cc	chr19:14523673-14523939(-)$1	266	171	176	15.0000
cceee	chr19:41858745-41858998(-)$1	253	73	78	15.0000
fff::	chr2:70527945-70528236(-)$1	291	107	112	15.0000
3cccd	chr3:50645000-50645218(-)$1	218	120	125	15.0000
eeee[	chr11:34492829-34493077(+)$1	248	39	44	15.0000
]ccc:	chr2:10188280-10188518(+)$1	238	210	215	15.0000
ccccc	chr22:39910208-39910461(+)$1	253	214	219	15.0000
uua22	chr1:47746206-47746512(-)$1	306	162	167	15.0000
eeee:	chr11:289746-290012(+)$1	266	104	109	15.0000
eeeee	chr6:30691013-30691228(+)$1	215	209	214	15.0000
MMCCC	chr12:69652423-69652699(+)$1	276	26	31	15.0000
bffff	chr20:376932-377174(+)$1	242	184	189	15.0000
bbeee	chr9:138831466-138831699(-)$1	233	54	59	15.0000
ccc[d	chr16:89966972-89967251(+)$1	279	173	178	15.0000
:dddd	chr20:3102166-3102453(-)$1	287	0	5	15.0000
eennn	chr19:14627537-14627774(-)$1	237	156	161	15.0000
ggg]e	chr22:19865496-19865765(-)$1	269	235	240	15.0000
eeee!	chr22:19028595-19028898(-)$1	303	40	45	15.0000
mccc]	chr13:20356634-20356883(-)$1	249	228	233	15.0000
fJJJJ	chr7:142561943-142562235(+)$1	292	268	273	15.0000
!bb[e	chr14:23344981-23345255(+)$1	274	231	236	15.0000
ddd:D	chr9:140137386-140137611(+)$1	225	185	190	15.0000
ggggg	chr6:16129474-16129711(+)$1	237	153	158	15.0000
gggg!	chr19:2736929-2737178(-)$1	249	112	117	15.0000
FFFFC	chr22:21799106-21799364(+)$1	258	38	43	15.0000
cc555	chr17:40265653-40265908(-)$1	255	39	44	15.0000
FFFFF	chr19:18499277-18499513(+)$1	236	170	175	15.0000
FFFFF	chr11:58391577-58391819(+)$1	242	164	169	15.0000
qqqqq	chr4:77969441-77969692(-)$1	251	121	126	15.0000
dddd!	chr7:6080465-6080681(-)$1	216	40	45	15.0000
f22ee	chr1:40041444-40041676(-)$1	232	178	183	15.0000
e$$$$	chr16:67197133-67197396(+)$1	263	31	36	15.0000
%%ccc	chr8:103663628-103663898(-)$1	270	157	162	15.0000
:ffff	chr1:167381262-167381526(+)$1	264	32	37	15.0000
yyeee	chr11:14665748-14665977(+)$1	229	25	30	15.0000

#DB
((((.	chr15:49036368-49036612(-)$1	1	106	111	15.0000
)).))	chr11:14666373-14666617(+)$1	1	15	20	15.0000
(.(((	chr9:101983855-101984087(-)$1	1	133	138	15.0000
.....	chr3:53275080-53275373(-)$1	1	236	241	15.0000
)))).	chr6:28219424-28219755(-)$1	1	309	314	15.0000
).)))	chr17:54991166-54991413(-)$1	1	108	113	15.0000
(((((	chr19:50412682-50412928(-)$1	1	171	176	15.0000
))).(	chr15:72491921-72492157(-)$1	1	13	18	15.0000
)))..	chr8:103664155-103664382(-)$1	1	196	201	15.0000
))))(	chr11:119206891-119207153(+)$1	1	86	91	15.0000
....)	chr1:228645200-228645441(-)$1	1	101	106	15.0000
)))))	chr19:54682453-54682712(-)$1	1	209	214	15.0000
)))).	chr1:225600134-225600363(-)$1	1	196	201	15.0000
.))))	chr11:209031-209277(+)$1	1	123	128	15.0000
.....	chr1:36752561-36752812(+)$1	1	128	133	15.0000
..)))	chr12:49432493-49432723(-)$1	1	6	11	15.0000
)))))	chr1:20987610-20987874(-)$1	1	79	84	15.0000
.))))	chr17:76210257-76210523(+)$1	1	162	167	15.0000
((.((	chr19:14523673-14523939(-)$1	1	171	176	15.0000
(((((	chr19:41858745-41858998(-)$1	1	73	78	15.0000
)))..	chr2:70527945-70528236(-)$1	1	107	112	15.0000
.))))	chr3:50645000-50645218(-)$1	1	120	125	15.0000
((((.	chr11:34492829-34493077(+)$1	1	39	44	15.0000
.))).	chr2:10188280-10188518(+)$1	1	210	215	15.0000
)))))	chr22:39910208-39910461(+)$1	1	214	219	15.0000
..)..	chr1:47746206-47746512(-)$1	1	162	167	15.0000
)))).	chr11:289746-290012(+)$1	1	104	109	15.0000
)))))	chr6:30691013-30691228(+)$1	1	209	214	15.0000
..(((	chr12:69652423-69652699(+)$1	1	26	31	15.0000
)))))	chr20:376932-377174(+)$1	1	184	189	15.0000
(((((	chr9:138831466-138831699(-)$1	1	54	59	15.0000
(((.(	chr16:89966972-89967251(+)$1	1	173	178	15.0000
.((((	chr20:3102166-3102453(-)$1	1	0	5	15.0000
((...	chr19:14627537-14627774(-)$1	1	156	161	15.0000
))).)	chr22:19865496-19865765(-)$1	1	235	240	15.0000
((((.	chr22:19028595-19028898(-)$1	1	40	45	15.0000
.))).	chr13:20356634-20356883(-)$1	1	228	233	15.0000
)))))	chr7:142561943-142562235(+)$1	1	268	273	15.0000
.((.(	chr14:23344981-23345255(+)$1	1	231	236	15.0000
))).)	chr9:140137386-140137611(+)$1	1	185	190	15.0000
)))))	chr6:16129474-16129711(+)$1	1	153	158	15.0000
((((.	chr19:2736929-2737178(-)$1	1	112	117	15.0000
(((((	chr22:21799106-21799364(+)$1	1	38	43	15.0000
))...	chr17:40265653-40265908(-)$1	1	39	44	15.0000
)))))	chr19:18499277-18499513(+)$1	1	170	175	15.0000
)))))	chr11:58391577-58391819(+)$1	1	164	169	15.0000
.....	chr4:77969441-77969692(-)$1	1	121	126	15.0000
((((.	chr7:6080465-6080681(-)$1	1	40	45	15.0000
)..))	chr1:40041444-40041676(-)$1	1	178	183	15.0000
(....	chr16:67197133-67197396(+)$1	1	31	36	15.0000
..(((	chr8:103663628-103663898(-)$1	1	157	162	15.0000
.((((	chr1:167381262-167381526(+)$1	1	32	37	15.0000
..)))	chr11:14665748-14665977(+)$1	1	25	30	15.0000

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	

#score	795.0
#seq	53
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_transcript_m2_run1.nuc.txt

#NT
AGAAAG	chr2:234184532-234184735(+)$1	203	124	130	10.7857
aggaac	chr3:169437875-169438095(-)$1	220	2	8	10.5714
AGGAAA	chr17:62496827-62497048(-)$1	221	11	17	10.5714
AGGAAG	chr17:38183722-38183957(-)$1	235	67	73	14.4285
GGGAAG	chr17:7080311-7080572(-)$1	261	61	67	10.8571
uggaag	chr5:32309746-32309975(+)$1	229	52	58	10.7857
UGGAAG	chr5:179041871-179042112(-)$1	241	189	195	10.7857
AGGAAU	chrX:20154109-20154324(-)$1	215	7	13	10.5714
aggaag	chr17:18965298-18965547(+)$1	249	6	12	14.4285
AGGAAC	chr9:117054285-117054525(+)$1	240	141	147	10.5714
AGGAAG	chr3:169482317-169482533(-)$1	216	52	58	14.4285
AGGAAG	chr20:61588453-61588691(+)$1	238	88	94	14.4285
AGGAAG	chr14:95999710-95999936(-)$1	226	46	52	14.4285
AGGAAG	chr17:75446994-75447256(+)$1	262	84	90	14.4285
aggaug	chr10:107294391-107294623(+)$1	232	94	100	10.2857
AGAAAG	chr2:234197224-234197448(+)$1	224	18	24	10.7857
GGGAAG	chr17:7809285-7809655(+)$1	370	59	65	10.8571
AGGAAC	chr12:6619487-6619697(+)$1	210	125	131	10.5714
agggag	chrX:71596787-71597028(-)$1	241	118	124	10.3571
AGGGAG	chr10:34049826-34050055(-)$1	229	113	119	10.3571
AGGAAG	chr17:79970130-79970362(+)$1	232	106	112	14.4285
AGGAAA	chr16:31199455-31199705(+)$1	250	30	36	10.5714
UGGAAG	chr12:46758252-46758491(-)$1	239	186	192	10.7857
agaaag	chr1:245207208-245207422(+)$1	214	180	186	10.7857
agggag	chr18:9518118-9518329(-)$1	211	131	137	10.3571
aggaug	chr18:66526142-66526379(+)$1	237	97	103	10.2857
AGGAAG	chr15:25333703-25333951(+)$1	248	124	130	14.4285
AGUAAG	chr14:95999642-95999857(-)$1	215	88	94	10.4285
AGGAAU	chr11:93454847-93455053(+)$1	206	51	57	10.5714
AGAAAG	chr5:27484896-27485120(+)$1	224	29	35	10.7857
AGUAAG	chr14:95999607-95999814(-)$1	207	45	51	10.4285
AGAAAG	chr2:234184450-234184668(+)$1	218	206	212	10.7857
AGGAAG	chr5:179047917-179048173(-)$1	256	75	81	14.4285
GGGAAG	chr2:97533543-97533808(-)$1	265	25	31	10.8571
GGGAAG	chr9:137029525-137029738(-)$1	213	39	45	10.8571
AGGAUG	chr4:1976302-1976514(+)$1	212	20	26	10.2857
AGGAAG	chr3:169482296-169482516(-)$1	220	35	41	14.4285
aggaug	chr3:194935509-194935724(+)$1	215	75	81	10.2857
AGGAAG	chr14:95999820-96000023(-)$1	203	133	139	14.4285
aggaaa	chr14:70827531-70827746(+)$1	215	156	162	10.5714
AGGAAG	chr17:41464656-41464868(-)$1	212	69	75	14.4285
AGGAAG	chr12:120730885-120731102(-)$1	217	16	22	14.4285
AGGAAG	chr14:95999798-96000012(-)$1	214	122	128	14.4285
UGGAAG	chr12:6619301-6619525(+)$1	224	24	30	10.7857
AGGGAG	chr7:2674519-2674784(+)$1	265	89	95	10.3571
AGAAAG	chr2:234184474-234184677(+)$1	203	182	188	10.7857
AGGAAG	chr17:41464606-41464815(-)$1	209	16	22	14.4285
GGGAAG	chr8:144675853-144676109(-)$1	256	87	93	10.8571
AGGAAU	chr2:101889372-101889583(-)$1	211	76	82	10.5714
GGGAAG	chr11:62609115-62609320(-)$1	205	1	7	10.8571
AGGUAG	chrX:20154136-20154402(-)$1	266	72	78	9.9999
AGGAAA	chr12:120599791-120600040(-)$1	249	10	16	10.5714
AGAAAG	chr2:234184468-234184674(+)$1	206	188	194	10.7857
aggaug	chr19:893455-893690(+)$1	235	97	103	10.2857
agggag	chr3:73160100-73160342(+)$1	242	151	157	10.3571
agggag	chr7:53843822-53844051(+)$1	229	115	121	10.3571
AGCAAG	chr17:7809455-7809737(+)$1	282	84	90	10.4999
AGGAAU	chr2:101889299-101889507(-)$1	208	0	6	10.5714
UGGAAG	chr17:80187989-80188261(+)$1	272	17	23	10.7857
AGGAAG	chr14:95999772-95999985(-)$1	213	95	101	14.4285
AGGAAG	chr3:169482333-169482542(-)$1	209	61	67	14.4285
AGGAAG	chr14:95999691-95999899(-)$1	208	9	15	14.4285
AGGAUG	chr7:22896156-22896406(+)$1	250	81	87	10.2857
UGGAAG	chr11:62609147-62609352(-)$1	205	25	31	10.7857
AGCAAG	chr4:1976331-1976546(+)$1	215	82	88	10.4999
AGCAAG	chr4:1976346-1976592(+)$1	246	67	73	10.4999
AGGAAG	chr5:135382388-135382640(+)$1	252	149	155	14.4285
AGGAAG	chr17:27050366-27050609(+)$1	243	158	164	14.4285
GGGAAG	chr9:137029542-137029747(-)$1	205	48	54	10.8571

#otherMatches

#Struct PSSM
eee22f	chr11:62609093-62609310(-)$1	217	202	208	10.5714
%dddd#	chr2:234184532-234184735(+)$1	203	124	130	10.7857
::::::	chr3:169437875-169438095(-)$1	220	2	8	10.5714
DDDDee	chr17:62496827-62497048(-)$1	221	11	17	10.5714
hdddd[	chr17:38183722-38183957(-)$1	235	67	73	14.4285
uuuuuu	chr17:7080311-7080572(-)$1	261	61	67	10.8571
^^dddd	chr5:32309746-32309975(+)$1	229	52	58	10.7857
EEEYYB	chr5:179041871-179042112(-)$1	241	189	195	10.7857
HHHHH:	chrX:20154109-20154324(-)$1	215	7	13	10.5714
dddd[e	chr17:18965298-18965547(+)$1	249	6	12	14.4285
EEEE__	chr9:117054285-117054525(+)$1	240	141	147	10.5714
hhhhhh	chr3:169482317-169482533(-)$1	216	52	58	14.4285
vvvvvv	chr20:61588453-61588691(+)$1	238	88	94	14.4285
iiiiii	chr14:95999710-95999936(-)$1	226	46	52	14.4285
f4444b	chr17:75446994-75447256(+)$1	262	84	90	14.4285
::::::	chr10:107294391-107294623(+)$1	232	94	100	10.2857
((((((	chr2:234197224-234197448(+)$1	224	18	24	10.7857
hhhhhh	chr17:7809285-7809655(+)$1	370	59	65	10.8571
JJJJJ}	chr12:6619487-6619697(+)$1	210	125	131	10.5714
GEEEEE	chrX:71596787-71597028(-)$1	241	118	124	10.3571
]ggggg	chr10:34049826-34050055(-)$1	229	113	119	10.3571
YYIIII	chr17:79970130-79970362(+)$1	232	106	112	14.4285
JJJJJJ	chr16:31199455-31199705(+)$1	250	30	36	10.5714
===::d	chr12:46758252-46758491(-)$1	239	186	192	10.7857
:::::e	chr1:245207208-245207422(+)$1	214	180	186	10.7857
c[dddd	chr18:9518118-9518329(-)$1	211	131	137	10.3571
ddd444	chr18:66526142-66526379(+)$1	237	97	103	10.2857
eeennn	chr15:25333703-25333951(+)$1	248	124	130	14.4285
ggg333	chr14:95999642-95999857(-)$1	215	88	94	10.4285
IIIIII	chr11:93454847-93455053(+)$1	206	51	57	10.5714
ddd[dd	chr5:27484896-27485120(+)$1	224	29	35	10.7857
D{AMMM	chr14:95999607-95999814(-)$1	207	45	51	10.4285
HHHHHH	chr2:234184450-234184668(+)$1	218	206	212	10.7857
ffffff	chr5:179047917-179048173(-)$1	256	75	81	14.4285
cc::ee	chr2:97533543-97533808(-)$1	265	25	31	10.8571
bbmmmm	chr9:137029525-137029738(-)$1	213	39	45	10.8571
gggggb	chr4:1976302-1976514(+)$1	212	20	26	10.2857
hhhhhh	chr3:169482296-169482516(-)$1	220	35	41	14.4285
ccc444	chr3:194935509-194935724(+)$1	215	75	81	10.2857
iiiiii	chr14:95999820-96000023(-)$1	203	133	139	14.4285
occc]c	chr14:70827531-70827746(+)$1	215	156	162	10.5714
bb4444	chr17:41464656-41464868(-)$1	212	69	75	14.4285
GGGGGG	chr12:120730885-120731102(-)$1	217	16	22	14.4285
iiiiii	chr14:95999798-96000012(-)$1	214	122	128	14.4285
gggg[d	chr12:6619301-6619525(+)$1	224	24	30	10.7857
[iiiii	chr7:2674519-2674784(+)$1	265	89	95	10.3571
dd::::	chr2:234184474-234184677(+)$1	203	182	188	10.7857
dd!!dd	chr17:41464606-41464815(-)$1	209	16	22	14.4285
GGGGGG	chr8:144675853-144676109(-)$1	256	87	93	10.8571
JJJOOO	chr2:101889372-101889583(-)$1	211	76	82	10.5714
::::bb	chr11:62609115-62609320(-)$1	205	1	7	10.8571
JJJJKK	chrX:20154136-20154402(-)$1	266	72	78	9.9999
FF::::	chr12:120599791-120600040(-)$1	249	10	16	10.5714
dd::::	chr2:234184468-234184674(+)$1	206	188	194	10.7857
ccc444	chr19:893455-893690(+)$1	235	97	103	10.2857
%%dddd	chr3:73160100-73160342(+)$1	242	151	157	10.3571
gggg==	chr7:53843822-53844051(+)$1	229	115	121	10.3571
llccc]	chr17:7809455-7809737(+)$1	282	84	90	10.4999
:::::e	chr2:101889299-101889507(-)$1	208	0	6	10.5714
eennnn	chr17:80187989-80188261(+)$1	272	17	23	10.7857
iiiiii	chr14:95999772-95999985(-)$1	213	95	101	14.4285
hhhhhh	chr3:169482333-169482542(-)$1	209	61	67	14.4285
iiiiii	chr14:95999691-95999899(-)$1	208	9	15	14.4285
ccc[dd	chr7:22896156-22896406(+)$1	250	81	87	10.2857
777777	chr11:62609147-62609352(-)$1	205	25	31	10.7857
fff22c	chr4:1976331-1976546(+)$1	215	82	88	10.4999
fff22c	chr4:1976346-1976592(+)$1	246	67	73	10.4999
JJJJJJ	chr5:135382388-135382640(+)$1	252	149	155	14.4285
YA}DDD	chr17:27050366-27050609(+)$1	243	158	164	14.4285
bbmmmm	chr9:137029542-137029747(-)$1	205	48	54	10.8571

#DB
)))..)	chr11:62609093-62609310(-)$1	1	202	208	10.5714
.((((.	chr2:234184532-234184735(+)$1	1	124	130	10.7857
......	chr3:169437875-169438095(-)$1	1	2	8	10.5714
((((((	chr17:62496827-62497048(-)$1	1	11	17	10.5714
(((((.	chr17:38183722-38183957(-)$1	1	67	73	14.4285
......	chr17:7080311-7080572(-)$1	1	61	67	10.8571
..))))	chr5:32309746-32309975(+)$1	1	52	58	10.7857
)))..)	chr5:179041871-179042112(-)$1	1	189	195	10.7857
(((((.	chrX:20154109-20154324(-)$1	1	7	13	10.5714
((((.(	chr17:18965298-18965547(+)$1	1	6	12	14.4285
))))..	chr9:117054285-117054525(+)$1	1	141	147	10.5714
((((((	chr3:169482317-169482533(-)$1	1	52	58	14.4285
......	chr20:61588453-61588691(+)$1	1	88	94	14.4285
((((((	chr14:95999710-95999936(-)$1	1	46	52	14.4285
)....)	chr17:75446994-75447256(+)$1	1	84	90	14.4285
......	chr10:107294391-107294623(+)$1	1	94	100	10.2857
......	chr2:234197224-234197448(+)$1	1	18	24	10.7857
((((((	chr17:7809285-7809655(+)$1	1	59	65	10.8571
))))).	chr12:6619487-6619697(+)$1	1	125	131	10.5714
)(((((	chrX:71596787-71597028(-)$1	1	118	124	10.3571
.)))))	chr10:34049826-34050055(-)$1	1	113	119	10.3571
..))))	chr17:79970130-79970362(+)$1	1	106	112	14.4285
((((((	chr16:31199455-31199705(+)$1	1	30	36	10.5714
)))..(	chr12:46758252-46758491(-)$1	1	186	192	10.7857
.....(	chr1:245207208-245207422(+)$1	1	180	186	10.7857
(.((((	chr18:9518118-9518329(-)$1	1	131	137	10.3571
)))...	chr18:66526142-66526379(+)$1	1	97	103	10.2857
(((...	chr15:25333703-25333951(+)$1	1	124	130	14.4285
)))...	chr14:95999642-95999857(-)$1	1	88	94	10.4285
((((((	chr11:93454847-93455053(+)$1	1	51	57	10.5714
(((.((	chr5:27484896-27485120(+)$1	1	29	35	10.7857
(.(...	chr14:95999607-95999814(-)$1	1	45	51	10.4285
))))))	chr2:234184450-234184668(+)$1	1	206	212	10.7857
))))))	chr5:179047917-179048173(-)$1	1	75	81	14.4285
))..((	chr2:97533543-97533808(-)$1	1	25	31	10.8571
((....	chr9:137029525-137029738(-)$1	1	39	45	10.8571
((((((	chr4:1976302-1976514(+)$1	1	20	26	10.2857
((((((	chr3:169482296-169482516(-)$1	1	35	41	14.4285
)))...	chr3:194935509-194935724(+)$1	1	75	81	10.2857
((((((	chr14:95999820-96000023(-)$1	1	133	139	14.4285
.))).)	chr14:70827531-70827746(+)$1	1	156	162	10.5714
))....	chr17:41464656-41464868(-)$1	1	69	75	14.4285
((((((	chr12:120730885-120731102(-)$1	1	16	22	14.4285
((((((	chr14:95999798-96000012(-)$1	1	122	128	14.4285
((((.(	chr12:6619301-6619525(+)$1	1	24	30	10.7857
.(((((	chr7:2674519-2674784(+)$1	1	89	95	10.3571
))....	chr2:234184474-234184677(+)$1	1	182	188	10.7857
((..((	chr17:41464606-41464815(-)$1	1	16	22	14.4285
((((((	chr8:144675853-144676109(-)$1	1	87	93	10.8571
(((...	chr2:101889372-101889583(-)$1	1	76	82	10.5714
....((	chr11:62609115-62609320(-)$1	1	1	7	10.8571
((((..	chrX:20154136-20154402(-)$1	1	72	78	9.9999
((....	chr12:120599791-120600040(-)$1	1	10	16	10.5714
))....	chr2:234184468-234184674(+)$1	1	188	194	10.7857
)))...	chr19:893455-893690(+)$1	1	97	103	10.2857
..((((	chr3:73160100-73160342(+)$1	1	151	157	10.3571
((((((	chr7:53843822-53844051(+)$1	1	115	121	10.3571
..))).	chr17:7809455-7809737(+)$1	1	84	90	10.4999
.....(	chr2:101889299-101889507(-)$1	1	0	6	10.5714
((....	chr17:80187989-80188261(+)$1	1	17	23	10.7857
((((((	chr14:95999772-95999985(-)$1	1	95	101	14.4285
((((((	chr3:169482333-169482542(-)$1	1	61	67	14.4285
((((((	chr14:95999691-95999899(-)$1	1	9	15	14.4285
(((.((	chr7:22896156-22896406(+)$1	1	81	87	10.2857
......	chr11:62609147-62609352(-)$1	1	25	31	10.7857
)))..)	chr4:1976331-1976546(+)$1	1	82	88	10.4999
)))..)	chr4:1976346-1976592(+)$1	1	67	73	10.4999
))))))	chr5:135382388-135382640(+)$1	1	149	155	14.4285
.).)))	chr17:27050366-27050609(+)$1	1	158	164	14.4285
((....	chr9:137029542-137029747(-)$1	1	48	54	10.8571

#PSSM
A : 0.62	a : 0.18	G : 0.10	U : 0.07	u : 0.01	
G : 0.79	g : 0.20	
G : 0.64	g : 0.18	A : 0.08	C : 0.04	U : 0.02	a : 0.01	
A : 0.75	a : 0.14	g : 0.05	G : 0.02	U : 0.01	
A : 0.77	a : 0.14	u : 0.05	U : 0.02	
G : 0.67	g : 0.15	U : 0.05	A : 0.04	c : 0.02	C : 0.02	a : 0.01	

#score	817.8571428571431
#seq	70
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_CDS_m1_run1.nuc.txt

#NT
gaagaaaaagaagaggaagaggaugaaaaaagugaaga	chr1:94341823-94342084(-)$1	261	145	183	52.4693
gaggaggaugaggaugaggaugaagaugaagaugaagC	chr1:150198839-150199108(-)$1	269	64	102	61.3469
gaagaggaagaagaugaugaugaagaugaagaugaaga	chr19:14199936-14200224(-)$1	288	80	118	73.8979
UAUgaggaggaagaggaagaggaagaggaggaagaaga	chr7:128434301-128434581(+)$1	280	123	161	60.0204
gaaggagaagaagaugaugaugaugaugaagaggagga	chr9:131456196-131456417(+)$1	221	5	43	60.6326
GGGGGUGAUGAAGAUGGUUAUGAAGAAGAAGAAGAUGA	chr17:73664500-73664813(+)$1	313	151	189	48.7959
gaggaggcugaagaggacgaugaagaagaagaagaaga	chr2:27606746-27607013(-)$1	267	123	161	62.7755
ggagaggaggaagaugaaggggaagaagaaggugggga	chr12:6879030-6879258(+)$1	228	104	142	53.1836
gaaaaggaagacaaagaagaagaaaaagaaaaagaaga	chr14:102551064-102551304(-)$1	240	14	52	56.9591
gaagaggaagaggaugaagaggaggaagaagaggaaga	chr10:76781704-76782056(+)$1	352	168	206	66.5510
Aaagaagaagaaaaagaagaagaagcacaagaagaagc	chr1:31836829-31837137(+)$1	308	162	200	52.1632
Aaagaagaagaugaagaugaugaagaagcagaagagga	chr1:235377051-235377354(-)$1	303	26	64	57.5714
GAAGAGAAAGAAGAUGCUGAGAAAGAAAACAUUGAAAA	chr7:104782781-104783042(-)$1	261	122	160	42.4693
gaaggugaagaagaugaagaugaugaugaaggggagga	chr9:131456217-131456421(+)$1	204	59	97	57.5714
gaggagguggaggaagaagaagaagaugaugaugaaga	chr1:52305876-52306147(-)$1	271	58	96	60.4285
gaagaggaagaugaggaugccgaaggaaaagaugaaga	chr2:29169490-29169765(+)$1	275	29	67	55.6326
AAAGAGGAAGAAGAAAGACAGAAGAGAGAAGAGGAAGA	chr2:99980189-99980426(+)$1	237	52	90	42.8775
gaagaggaagaagaaaaaguggcagaagaagaagaaac	chr2:203167633-203167881(+)$1	248	15	53	52.6734
aaagaagaggaagaaaaaaagaaacaucaagaggaaga	chr10:12077037-12077324(-)$1	287	166	204	44.6122
cuggaagaagaagaacagaaugaagaggaagaaguaga	chr9:116171005-116171267(-)$1	262	132	170	47.4693
gaggaggaggaagaggaggaagaagaagaagaggaaga	chr6:31857143-31857449(-)$1	306	109	147	67.1632
cuagaggaagaggaggagaaagaagaggaggaggaaga	chr1:36216749-36217093(-)$1	344	189	227	53.1836
gaggaggaagaagaggaggaagaagagggcgacgagga	chr17:7788077-7788380(+)$1	303	101	139	56.7551
UAGGAGGAAGAUGAAGAUUUUGAAGAAGAAAGUGAUGA	chr11:94703048-94703361(-)$1	313	98	136	46.7551
GUaaaagaagaugaugaaccagaggaagaagaugaaga	chr12:123820869-123821153(-)$1	284	127	165	49.9183
gaagaugaagaagaugaagaugaagaagaagaugaUGA	chr13:31035379-31035665(-)$1	286	124	162	69.1020
CAAGAACaugaagaugauggugaagaugaagaugauga	chr8:124381990-124382291(-)$1	301	50	88	53.7959
ggaguggaagaagauguggaggaagaugaagaaguaga	chr4:69202683-69203058(-)$1	375	40	78	56.5510
gaaaaggaagacaaagaagaagaaaaagaaaaagaaga	chr14:102551186-102551425(-)$1	239	135	173	56.9591
gaggaggaugaagaugaugaagaugaugaagaggaaga	chrX:64737824-64738092(-)$1	268	72	110	65.2244
gaaaaggaagacaaagaagaagaaaaagaaaaagaaga	chr14:102551166-102551386(-)$1	220	96	134	56.9591
gaagaggaagaagaggaagaagaagaagaggaagaaga	chr17:4575468-4575723(-)$1	255	111	149	71.5510
GGUGAGGAAGAGGAUGGAGAUGAAGAUGAGGAAGCUGA	chr2:232577058-232577268(+)$1	210	93	131	52.7755
ggugagaaagaagaggaagauaaagaugaugaagaaaa	chr6:44218005-44218223(+)$1	218	76	114	55.1224
ggugagaaagaagaggaagauaaagaugaugaagaaaa	chr6:44217998-44218205(+)$1	207	83	121	55.1224
gaagaggaagaagaagaugaagaaagugaagaagagga	chr2:99992716-99992995(+)$1	279	155	193	63.7959
gaggagguggaggaagaagaagaagaugaugaugaaga	chr1:52305947-52306221(-)$1	274	132	170	60.4285
GGAGAUGAUGAAGAUUGGGAAGAAGAUGAUGCUGAAGA	chr11:9461935-9462252(+)$1	317	149	187	49.6122
aaagagagagaagauggaaaagaagaugaagguggaaa	chrX:80370056-80370379(-)$1	323	79	117	44.1020
Aaggaugaagaagaugaugaugacuauguugaagaagg	chr1:150195410-150195666(-)$1	256	97	135	46.9591
gaaaaggaagacaaagaagaagaaaaagaaaaagaaga	chr14:102551117-102551354(-)$1	237	64	102	56.9591
gaggaggaggaagaggaggaggaagaUGAAAAUGAUGA	chrX:76907530-76907929(-)$1	399	137	175	61.0408
gaaggagaagaagaugaugaugaugaugaagaggagga	chr9:131456113-131456340(+)$1	227	88	126	60.6326
ggugagaaagaagaggaagauaaagaugaugaagaaaa	chr6:44218023-44218290(+)$1	267	58	96	55.1224
gaagaggaagaagaagaugaagaaagugaagaagagga	chr2:99992795-99993118(+)$1	323	76	114	63.7959
gacgacgacgaagaugaugaagaugaugaugaugaaga	chr2:232325279-232325482(-)$1	203	33	71	58.4897
gaagaggaacaacaagaagaaggagaagaagaugaaga	chr8:95541195-95541527(-)$1	332	70	108	60.7346
gaggaggaggaagaagaagaugaagaugaggaggaaga	chr4:174253133-174253372(-)$1	239	85	123	66.7551

#otherMatches

#Struct PSSM
:::DDDDYYJJJJJJJJJJ:::::::::::::::::::	chr2:232325425-232325663(-)$1	238	178	216	58.6938
:::::::::::::::::::::ffffffwwwwwwwwwww	chr1:94341823-94342084(-)$1	261	145	183	52.4693
^^bb]dddd]bb:::::::::::::::::::::GGGGG	chr1:150198839-150199108(-)$1	269	64	102	61.3469
c::EEEEEEEEEECCC::::::::::::::::::::::	chr19:14199936-14200224(-)$1	288	80	118	73.8979
emmmmeeeee::::::::::::::::::::::::::ee	chr7:128434301-128434581(+)$1	280	123	161	60.0204
::::::::::HHHHHHHH{DDDDNNNNNEEEEE:::::	chr9:131456196-131456417(+)$1	221	5	43	60.6326
FFFFFFZZZHHHHHHHH}BBYYFFFFFFGGGGGGG}HH	chr17:73664500-73664813(+)$1	313	151	189	48.7959
OOOOOOCCC:::::::bb[bb^^^^^^^^^^^^^^^^^	chr2:27606746-27607013(-)$1	267	123	161	62.7755
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:6879030-6879258(+)$1	228	104	142	53.1836
::::::::::::::::::::::::::::::::::::::	chr14:102551064-102551304(-)$1	240	14	52	56.9591
:::::bb!!a!!ccc"""a[bb[ccc####ccc"""cc	chr10:76781704-76782056(+)$1	352	168	206	66.5510
::::::::::::::::::::::::bbssssssssssbb	chr1:31836829-31837137(+)$1	308	162	200	52.1632
:::::::::::::::::::::::::::CCCLLLCCCKK	chr1:235377051-235377354(-)$1	303	26	64	57.5714
fff:::::::::::::bbnnnnnbb::::ddddooooo	chr7:104782781-104783042(-)$1	261	122	160	42.4693
gg!!eeeee%%%%%%dddd[bb[a!!bb!!ccc!!bb!	chr9:131456217-131456421(+)$1	204	59	97	57.5714
UUUUUEEEEE::::bb####dddd!!aqqqqqqqqa22	chr1:52305876-52306147(-)$1	271	58	96	60.4285
xxxxxxxxxxxxxxxddddbb:::::::::::::::::	chr2:29169490-29169765(+)$1	275	29	67	55.6326
5555ccc:::::DDDDKKEEEEELLLGGGGGGGEEEEE	chr2:99980189-99980426(+)$1	237	52	90	42.8775
LLFFFFFFCCC{DDDD:::a[eeeeevvvvvvvvvvvv	chr2:203167633-203167881(+)$1	248	15	53	52.6734
::::::::::::::::::::::::::::::::::::::	chr10:12077037-12077324(-)$1	287	166	204	44.6122
cccuuuuuuuuuuuuccc::::::::::::::ccc"""	chr9:116171005-116171267(-)$1	262	132	170	47.4693
ddddddd]dddd]ccc88888888bb55555ddddccc	chr6:31857143-31857449(-)$1	306	109	147	67.1632
bb::::::::::::::::::::::::::::::::::::	chr1:36216749-36217093(-)$1	344	189	227	53.1836
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd:::::	chr17:7788077-7788380(+)$1	303	101	139	56.7551
cccdddd55555ggggggg::::::HHHHHHHH}A}FF	chr11:94703048-94703361(-)$1	313	98	136	46.7551
::ggggggg"""bb[ffffff[ggggggg"""ccc$$$	chr12:123820869-123821153(-)$1	284	127	165	49.9183
b[eeeee####ffffff####============!!bb$	chr13:31035379-31035665(-)$1	286	124	162	69.1020
c:::::ccc[a!!bb[bb[bb[a!!bb[a!!bb[bbmm	chr8:124381990-124382291(-)$1	301	50	88	53.7959
DDD{EEEEENNNNNCCC{CCC::::::::::::cccqq	chr4:69202683-69203058(-)$1	375	40	78	56.5510
C:::::::::::::::::::::::::::::::::::::	chr14:102551186-102551425(-)$1	239	135	173	56.9591
:::::::::::::bb[bbmmmmbb]bb:::::::::::	chrX:64737824-64738092(-)$1	268	72	110	65.2244
::::::::::::::::::::::::::::::::::::::	chr14:102551166-102551386(-)$1	220	96	134	56.9591
EYYCCC::::::::::::::::::::::::::::::::	chr17:4575468-4575723(-)$1	255	111	149	71.5510
wwwwwwwwwwwwwwffffff]ccc333dddd:eeeeel	chr2:232577058-232577268(+)$1	210	93	131	52.7755
:::::::::::::::::::::::::::::::::::::f	chr6:44218005-44218223(+)$1	218	76	114	55.1224
:::::::::::::::::::::::::::::::::::::f	chr6:44217998-44218205(+)$1	207	83	121	55.1224
:::::::::::::::::::::::::DDDDZZZCCC|||	chr2:99992716-99992995(+)$1	279	155	193	63.7959
D}GGGGGGGYYA}CCC@@@@@@@@@@@@@EEEEE????	chr1:52305947-52306221(-)$1	274	132	170	60.4285
))))bb[bb[bbeeeeedddd(((((((((ccc!!ddd	chr11:9461935-9462252(+)$1	317	149	187	49.6122
:::::::::::::::::::::::::IIIIIIIII::::	chrX:80370056-80370379(-)$1	323	79	117	44.1020
]bb22ffffff::DDDD{JJJJJJJJJJJJ::::::::	chr1:150195410-150195666(-)$1	256	97	135	46.9591
55===========22ccc::::::::::::::::::::	chr14:102551117-102551354(-)$1	237	64	102	56.9591
}EEEEEDDDD{BBffffff[ddddwwwwwwwwwwwwww	chrX:76907530-76907929(-)$1	399	137	175	61.0408
====]a]bb::::bb[bbmmmmbb]bb::::::::::G	chr9:131456113-131456340(+)$1	227	88	126	60.6326
::::::::::::::::::::::::ccc!!bbsssssss	chr6:44218023-44218290(+)$1	267	58	96	55.1224
::::::::::::::::::::::::::::::::::::::	chr2:99992795-99993118(+)$1	323	76	114	63.7959
[ccc[a[eeeee[bb####ccc[bb####a!!dddd[e	chr2:232325279-232325482(-)$1	203	33	71	58.4897
::::::::::::::::::::::::::::::::::::::	chr8:95541195-95541527(-)$1	332	70	108	60.7346
:::::::::::::::DDDDPPPPPPPDDDD:::::hhh	chr4:174253133-174253372(-)$1	239	85	123	66.7551

#DB
...))))..))))))))))...................	chr2:232325425-232325663(-)$1	1	178	216	58.6938
.....................((((((...........	chr1:94341823-94342084(-)$1	1	145	183	52.4693
..)).)))).)).....................(((((	chr1:150198839-150199108(-)$1	1	64	102	61.3469
)..)))))))))))))......................	chr19:14199936-14200224(-)$1	1	80	118	73.8979
(....)))))..........................((	chr7:128434301-128434581(+)$1	1	123	161	60.0204
..........((((((((.((((.....(((((.....	chr9:131456196-131456417(+)$1	1	5	43	60.6326
))))))...)))))))).))..))))))))))))).))	chr17:73664500-73664813(+)$1	1	151	189	48.7959
......(((.......((.((.................	chr2:27606746-27607013(-)$1	1	123	161	62.7755
......................................	chr12:6879030-6879258(+)$1	1	104	142	53.1836
......................................	chr14:102551064-102551304(-)$1	1	14	52	56.9591
.....((..(..(((...(.((.(((....(((...((	chr10:76781704-76782056(+)$1	1	168	206	66.5510
........................((..........))	chr1:31836829-31837137(+)$1	1	162	200	52.1632
...........................(((...(((..	chr1:235377051-235377354(-)$1	1	26	64	57.5714
))).............((.....))....((((.....	chr7:104782781-104783042(-)$1	1	122	160	42.4693
((..(((((......((((.((.(..((..(((..((.	chr9:131456217-131456421(+)$1	1	59	97	57.5714
.....(((((....((....((((..(........)..	chr1:52305876-52306147(-)$1	1	58	96	60.4285
...............)))))).................	chr2:29169490-29169765(+)$1	1	29	67	55.6326
....))).....((((..(((((...((((((((((((	chr2:99980189-99980426(+)$1	1	52	90	42.8775
..(((((((((.((((...(.(((((............	chr2:203167633-203167881(+)$1	1	15	53	52.6734
......................................	chr10:12077037-12077324(-)$1	1	166	204	44.6122
(((............)))..............(((...	chr9:116171005-116171267(-)$1	1	132	170	47.4693
))))))).)))).)))........)).....)))))))	chr6:31857143-31857449(-)$1	1	109	147	67.1632
))....................................	chr1:36216749-36217093(-)$1	1	189	227	53.1836
.............................)))).....	chr17:7788077-7788380(+)$1	1	101	139	56.7551
))))))).....)))))))......)))))))).).))	chr11:94703048-94703361(-)$1	1	98	136	46.7551
..(((((((...((.((((((.(((((((...(((...	chr12:123820869-123821153(-)$1	1	127	165	49.9183
(.(((((....((((((....((((((((((((..((.	chr13:31035379-31035665(-)$1	1	124	162	69.1020
).....(((.(..((.((.((.(..((.(..((.((..	chr8:124381990-124382291(-)$1	1	50	88	53.7959
(((.(((((.....(((.(((............(((..	chr4:69202683-69203058(-)$1	1	40	78	56.5510
).....................................	chr14:102551186-102551425(-)$1	1	135	173	56.9591
.............((.((....)).))...........	chrX:64737824-64738092(-)$1	1	72	110	65.2244
......................................	chr14:102551166-102551386(-)$1	1	96	134	56.9591
)..)))................................	chr17:4575468-4575723(-)$1	1	111	149	71.5510
..............)))))).)))...)))).(((((.	chr2:232577058-232577268(+)$1	1	93	131	52.7755
.....................................(	chr6:44218005-44218223(+)$1	1	76	114	55.1224
.....................................(	chr6:44217998-44218205(+)$1	1	83	121	55.1224
.........................))))...)))...	chr2:99992716-99992995(+)$1	1	155	193	63.7959
).)))))))..).))).............)))))....	chr1:52305947-52306221(-)$1	1	132	170	60.4285
....((.((.(((((((((((.........(((..(((	chr11:9461935-9462252(+)$1	1	149	187	49.6122
.........................(((((((((....	chrX:80370056-80370379(-)$1	1	79	117	44.1020
.))..))))))..((((.((((((((((((........	chr1:150195410-150195666(-)$1	1	97	135	46.9591
..)))))))))))..)))....................	chr14:102551117-102551354(-)$1	1	64	102	56.9591
.)))))((((.((((((((.((((..............	chrX:76907530-76907929(-)$1	1	137	175	61.0408
)))).).))....((.((....)).))..........)	chr9:131456113-131456340(+)$1	1	88	126	60.6326
........................(((..((.......	chr6:44218023-44218290(+)$1	1	58	96	55.1224
......................................	chr2:99992795-99993118(+)$1	1	76	114	63.7959
.(((.(.(((((.((....(((.((....(..((((.(	chr2:232325279-232325482(-)$1	1	33	71	58.4897
......................................	chr8:95541195-95541527(-)$1	1	70	108	60.7346
...............((((.......((((.....(((	chr4:174253133-174253372(-)$1	1	85	123	66.7551

#PSSM
g : 0.67	G : 0.10	A : 0.08	U : 0.04	a : 0.04	c : 0.04	C : 0.02	
a : 0.67	A : 0.10	g : 0.10	G : 0.06	u : 0.04	U : 0.02	
a : 0.53	g : 0.22	A : 0.08	u : 0.06	U : 0.04	G : 0.04	c : 0.02	
g : 0.75	G : 0.14	a : 0.10	
a : 0.77	A : 0.12	g : 0.06	G : 0.02	u : 0.02	
g : 0.59	a : 0.16	u : 0.08	G : 0.08	U : 0.04	A : 0.02	c : 0.02	
g : 0.75	a : 0.10	G : 0.10	A : 0.02	C : 0.02	
a : 0.79	A : 0.12	u : 0.04	c : 0.02	g : 0.02	
a : 0.61	g : 0.16	u : 0.08	A : 0.08	U : 0.04	c : 0.02	
g : 0.85	G : 0.12	c : 0.02	
a : 0.87	A : 0.12	
a : 0.63	g : 0.10	A : 0.08	c : 0.08	u : 0.06	U : 0.02	G : 0.02	
g : 0.75	G : 0.12	a : 0.10	c : 0.02	
a : 0.87	A : 0.12	
u : 0.30	a : 0.30	g : 0.26	U : 0.08	A : 0.04	
g : 0.81	G : 0.08	a : 0.04	A : 0.02	c : 0.02	U : 0.02	
a : 0.83	G : 0.08	C : 0.02	A : 0.02	u : 0.02	g : 0.02	
a : 0.46	u : 0.24	g : 0.14	U : 0.06	A : 0.04	c : 0.02	G : 0.02	
g : 0.77	a : 0.08	G : 0.06	U : 0.04	C : 0.02	c : 0.02	
a : 0.77	A : 0.10	g : 0.04	c : 0.04	u : 0.02	U : 0.02	
a : 0.36	u : 0.32	g : 0.16	U : 0.06	G : 0.04	c : 0.02	A : 0.02	
g : 0.79	G : 0.08	a : 0.08	A : 0.04	
a : 0.83	A : 0.12	c : 0.02	g : 0.02	
a : 0.67	u : 0.12	A : 0.10	g : 0.06	G : 0.02	c : 0.02	
g : 0.71	a : 0.12	G : 0.10	A : 0.02	c : 0.02	u : 0.02	
a : 0.79	A : 0.10	g : 0.06	c : 0.02	G : 0.02	
u : 0.40	a : 0.34	g : 0.08	A : 0.08	U : 0.06	c : 0.02	
g : 0.77	G : 0.12	a : 0.04	c : 0.04	A : 0.02	
a : 0.79	A : 0.14	c : 0.02	g : 0.02	u : 0.02	
a : 0.59	u : 0.14	g : 0.10	A : 0.08	C : 0.02	c : 0.02	G : 0.02	U : 0.02	
g : 0.75	a : 0.10	G : 0.08	A : 0.06	
a : 0.77	g : 0.08	A : 0.08	U : 0.02	G : 0.02	C : 0.02	
a : 0.36	u : 0.28	g : 0.18	U : 0.08	A : 0.04	G : 0.02	c : 0.02	
g : 0.85	G : 0.14	
a : 0.77	A : 0.12	g : 0.04	u : 0.04	C : 0.02	
a : 0.63	g : 0.16	U : 0.10	A : 0.06	c : 0.02	u : 0.02	
g : 0.73	G : 0.14	a : 0.10	A : 0.02	
a : 0.75	A : 0.16	c : 0.04	C : 0.02	g : 0.02	

#score	2784.1632653061274
#seq	49
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_transcript_m2_run2.nuc.txt

#NT
GCCCAGGCCA	chr1:201452901-201453164(-)$1	263	142	152	13.7254
UGCCAGCCCC	chr5:32228961-32229274(-)$1	313	56	66	15.0980
CCCCAGCUCC	chr6:31595745-31595980(+)$1	235	55	65	14.6078
UCUCAGCCCC	chr17:45993507-45993794(+)$1	287	157	167	14.1176
GCCUAACCCC	chr12:124081876-124082110(+)$1	234	69	79	13.2352
UCCCAGCUCC	chr16:66965928-66966208(-)$1	280	144	154	14.9019
GCCCACACCC	chr3:47454485-47454755(+)$1	270	245	255	14.3137
GCCUACCCCC	chr16:28846403-28846608(+)$1	205	82	92	13.7254
gcccagcucg	chr22:17094887-17095117(+)$1	230	8	18	12.9411
GCCCAGCCAA	chr19:15945423-15945666(+)$1	243	168	178	12.9411
GCCCGGCCCC	chr1:8418576-8418937(-)$1	361	120	130	17.5490
GCCCACCCCU	chr19:2037899-2038167(-)$1	268	148	158	13.9215
GCCGGGCCCC	chr16:2303755-2304011(-)$1	256	190	200	13.0392
GGCCAGCUCC	chr2:70315292-70315519(+)$1	227	143	153	13.4313
ACACAGCCCC	chr19:41811558-41811860(+)$1	302	71	81	13.6274
ACCCAUCCCC	chr10:35819028-35819271(+)$1	243	166	176	14.8039
GACCAGCCCA	chr5:139622938-139623188(+)$1	250	61	71	13.5294
GCCCUGUCCC	chr19:48887635-48887839(-)$1	204	56	66	14.7058
ACCCACCCCC	chr1:116947002-116947256(+)$1	254	115	125	15.3921
GCCCCGGCCC	chr1:150947072-150947336(-)$1	264	214	224	14.2156
GCCCAACCUC	chr17:7483359-7483660(+)$1	301	167	177	13.6274
UCCCUUCCCC	chr17:7560328-7560582(+)$1	254	68	78	12.2549
GCCCCGCCCC	chr19:49843574-49843916(+)$1	342	33	43	17.7450
GCCCUGCGCC	chr6:33271974-33272238(-)$1	264	5	15	13.9215
GUCCAGCCCC	chr19:15350476-15350731(-)$1	255	120	130	17.0588
ccccagcccc	chr19:15353714-15353962(-)$1	248	20	30	18.5294
CCCCAGCCUC	chr16:4924926-4925193(+)$1	267	108	118	14.5098
GACCAGCCUC	chr6:7881923-7882195(-)$1	272	224	234	13.3333
UCCCAGUCCC	chr12:53856180-53856393(+)$1	213	90	100	15.4901
ccccagcccc	chr1:171526764-171527032(+)$1	268	224	234	18.5294
GCCCAGUGCC	chr5:36962126-36962370(+)$1	244	154	164	13.6274
GCCAAGCCUC	chr19:15353665-15353901(-)$1	236	121	131	12.5490
UCCCAACCCC	chr8:124027139-124027416(-)$1	277	126	136	15.3921
GCCCUGGCCC	chr12:120118199-120118436(+)$1	237	203	213	14.5098
CCCCACCCCC	chr16:81744563-81744814(+)$1	251	58	68	15.5882
GACCAGUCCC	chr11:34117965-34118205(+)$1	240	86	96	14.0196
GCCCCGUCCC	chr19:50372817-50373141(-)$1	324	0	10	14.4117
CCCCAGCCCA	chr5:154194210-154194450(+)$1	240	114	124	14.7058
GCCCUCCCCC	chr17:79478430-79478665(-)$1	235	157	167	15.0980
GCCCAGCCCC	chr11:64571387-64571635(-)$1	248	107	117	21.0784
GCCCUGCCCC	chr6:34213653-34213862(+)$1	209	171	181	18.0392
gcccacccgc	chr19:17430377-17430712(+)$1	335	134	144	13.8235
GCCCUGCCCA	chr12:121137330-121137577(+)$1	247	200	210	14.2156
GGCCAGCCCC	chr16:30678762-30679043(+)$1	281	4	14	17.3529
AGCCAGCCCC	chr1:27057891-27058158(+)$1	267	39	49	14.6078
GCCCAGUCCC	chr16:28846841-28847074(+)$1	233	136	146	17.7450
UCCCAGCACC	chr14:77978162-77978439(-)$1	277	147	157	14.6078
UCCCCGCCCC	chr17:39911291-39911540(-)$1	249	49	59	15.4901
GACCAGCCCC	chr11:63743759-63744013(+)$1	254	65	75	17.3529
GCCCACCCCC	chr12:54763183-54763454(-)$1	271	157	167	18.1372

#otherMatches

#Struct PSSM
cc::ccciii	chr6:37141851-37142091(+)$1	240	161	171	15.2941
====oooooo	chr1:201452901-201453164(-)$1	263	142	152	13.7254
cbb]eeeeee	chr5:32228961-32229274(-)$1	313	56	66	15.0980
:::::CCCHH	chr6:31595745-31595980(+)$1	235	55	65	14.6078
ccc!!bbmmm	chr17:45993507-45993794(+)$1	287	157	167	14.1176
eeeee88888	chr12:124081876-124082110(+)$1	234	69	79	13.2352
ddcccdddd:	chr16:66965928-66966208(-)$1	280	144	154	14.9019
EEEE~~~~BB	chr3:47454485-47454755(+)$1	270	245	255	14.3137
d"""bb[a[c	chr16:28846403-28846608(+)$1	205	82	92	13.7254
EEEEFFFFFF	chr22:17094887-17095117(+)$1	230	8	18	12.9411
qqqqqdddd:	chr19:15945423-15945666(+)$1	243	168	178	12.9411
%%%%ccc!!b	chr1:8418576-8418937(-)$1	361	120	130	17.5490
qhhhhhhhh:	chr19:2037899-2038167(-)$1	268	148	158	13.9215
ffffflllff	chr16:2303755-2304011(-)$1	256	190	200	13.0392
dddd[dddda	chr2:70315292-70315519(+)$1	227	143	153	13.4313
mmmmeeeee:	chr19:41811558-41811860(+)$1	302	71	81	13.6274
ooffffff::	chr10:35819028-35819271(+)$1	243	166	176	14.8039
ee]dddd]dd	chr5:139622938-139623188(+)$1	250	61	71	13.5294
DDDKKCCCRR	chr19:48887635-48887839(-)$1	204	56	66	14.7058
$$dddd"""b	chr1:116947002-116947256(+)$1	254	115	125	15.3921
FFFFBBDDDD	chr1:150947072-150947336(-)$1	264	214	224	14.2156
uuuuuuuccc	chr17:7483359-7483660(+)$1	301	167	177	13.6274
HJJJJJJJJJ	chr17:7560328-7560582(+)$1	254	68	78	12.2549
F::::dddd[	chr19:49843574-49843916(+)$1	342	33	43	17.7450
GG{GGGGGGG	chr6:33271974-33272238(-)$1	264	5	15	13.9215
d22ccc333b	chr19:15350476-15350731(-)$1	255	120	130	17.0588
^^^^^^^^^^	chr19:15353714-15353962(-)$1	248	20	30	18.5294
qqqqqqqbb]	chr16:4924926-4925193(+)$1	267	108	118	14.5098
99999999ii	chr6:7881923-7882195(-)$1	272	224	234	13.3333
ppppddddcc	chr12:53856180-53856393(+)$1	213	90	100	15.4901
bmmmmbb333	chr1:171526764-171527032(+)$1	268	224	234	18.5294
2eeeee:bb[	chr5:36962126-36962370(+)$1	244	154	164	13.6274
e::::bbmmm	chr19:15353665-15353901(-)$1	236	121	131	12.5490
^^^^^^^^^^	chr8:124027139-124027416(-)$1	277	126	136	15.3921
eeeee22ccc	chr12:120118199-120118436(+)$1	237	203	213	14.5098
::::::::::	chr16:81744563-81744814(+)$1	251	58	68	15.5882
:::::eeeee	chr11:34117965-34118205(+)$1	240	86	96	14.0196
CCCDDDD:::	chr19:50372817-50373141(-)$1	324	0	10	14.4117
FFFFF:::::	chr5:154194210-154194450(+)$1	240	114	124	14.7058
ffffff::::	chr17:79478430-79478665(-)$1	235	157	167	15.0980
cffffff:::	chr11:64571387-64571635(-)$1	248	107	117	21.0784
eellleeeee	chr6:34213653-34213862(+)$1	209	171	181	18.0392
cceeeee]bb	chr19:17430377-17430712(+)$1	335	134	144	13.8235
ffffffmmmm	chr12:121137330-121137577(+)$1	247	200	210	14.2156
EMMMMEEEEE	chr16:30678762-30679043(+)$1	281	4	14	17.3529
eeee^^^^^^	chr1:27057891-27058158(+)$1	267	39	49	14.6078
ssssseeeee	chr16:28846841-28847074(+)$1	233	136	146	17.7450
::ffffff##	chr14:77978162-77978439(-)$1	277	147	157	14.6078
:::::::EEE	chr17:39911291-39911540(-)$1	249	49	59	15.4901
ccdddd$$$$	chr11:63743759-63744013(+)$1	254	65	75	17.3529
a22ffffff]	chr12:54763183-54763454(-)$1	271	157	167	18.1372

#DB
))..((((((	chr6:37141851-37142091(+)$1	1	161	171	15.2941
((((......	chr1:201452901-201453164(-)$1	1	142	152	13.7254
))).)))))(	chr5:32228961-32229274(-)$1	1	56	66	15.0980
.....(((((	chr6:31595745-31595980(+)$1	1	55	65	14.6078
(((..((...	chr17:45993507-45993794(+)$1	1	157	167	14.1176
))))).....	chr12:124081876-124082110(+)$1	1	69	79	13.2352
))))))))).	chr16:66965928-66966208(-)$1	1	144	154	14.9019
))))....))	chr3:47454485-47454755(+)$1	1	245	255	14.3137
(...((.(.(	chr16:28846403-28846608(+)$1	1	82	92	13.7254
((((((((((	chr22:17094887-17095117(+)$1	1	8	18	12.9411
.....)))).	chr19:15945423-15945666(+)$1	1	168	178	12.9411
....(((..(	chr1:8418576-8418937(-)$1	1	120	130	17.5490
.)))))))).	chr19:2037899-2038167(-)$1	1	148	158	13.9215
(((((...))	chr16:2303755-2304011(-)$1	1	190	200	13.0392
((((.(((((	chr2:70315292-70315519(+)$1	1	143	153	13.4313
....))))).	chr19:41811558-41811860(+)$1	1	71	81	13.6274
..))))))..	chr10:35819028-35819271(+)$1	1	166	176	14.8039
)).)))).))	chr5:139622938-139623188(+)$1	1	61	71	13.5294
(((..(((..	chr19:48887635-48887839(-)$1	1	56	66	14.7058
..((((...(	chr1:116947002-116947256(+)$1	1	115	125	15.3921
))))))))))	chr1:150947072-150947336(-)$1	1	214	224	14.2156
.......)))	chr17:7483359-7483660(+)$1	1	167	177	13.6274
((((((((((	chr17:7560328-7560582(+)$1	1	68	78	12.2549
(....((((.	chr19:49843574-49843916(+)$1	1	33	43	17.7450
((.(((((((	chr6:33271974-33272238(-)$1	1	5	15	13.9215
)..)))...)	chr19:15350476-15350731(-)$1	1	120	130	17.0588
..........	chr19:15353714-15353962(-)$1	1	20	30	18.5294
.......)).	chr16:4924926-4925193(+)$1	1	108	118	14.5098
........))	chr6:7881923-7882195(-)$1	1	224	234	13.3333
....))))((	chr12:53856180-53856393(+)$1	1	90	100	15.4901
(....))...	chr1:171526764-171527032(+)$1	1	224	234	18.5294
.))))).((.	chr5:36962126-36962370(+)$1	1	154	164	13.6274
)....((...	chr19:15353665-15353901(-)$1	1	121	131	12.5490
..........	chr8:124027139-124027416(-)$1	1	126	136	15.3921
)))))..)))	chr12:120118199-120118436(+)$1	1	203	213	14.5098
..........	chr16:81744563-81744814(+)$1	1	58	68	15.5882
.....(((((	chr11:34117965-34118205(+)$1	1	86	96	14.0196
(((((((...	chr19:50372817-50373141(-)$1	1	0	10	14.4117
(((((.....	chr5:154194210-154194450(+)$1	1	114	124	14.7058
))))))....	chr17:79478430-79478665(-)$1	1	157	167	15.0980
)))))))...	chr11:64571387-64571635(-)$1	1	107	117	21.0784
((...)))))	chr6:34213653-34213862(+)$1	1	171	181	18.0392
))))))).))	chr19:17430377-17430712(+)$1	1	134	144	13.8235
((((((....	chr12:121137330-121137577(+)$1	1	200	210	14.2156
(....(((((	chr16:30678762-30679043(+)$1	1	4	14	17.3529
((((......	chr1:27057891-27058158(+)$1	1	39	49	14.6078
.....)))))	chr16:28846841-28847074(+)$1	1	136	146	17.7450
..((((((..	chr14:77978162-77978439(-)$1	1	147	157	14.6078
.......(((	chr17:39911291-39911540(-)$1	1	49	59	15.4901
((((((....	chr11:63743759-63744013(+)$1	1	65	75	17.3529
)..)))))).	chr12:54763183-54763454(-)$1	1	157	167	18.1372

#PSSM
G : 0.58	U : 0.17	C : 0.07	A : 0.07	g : 0.03	c : 0.03	
C : 0.74	G : 0.07	c : 0.07	A : 0.07	U : 0.01	
C : 0.88	c : 0.07	U : 0.01	A : 0.01	
C : 0.84	c : 0.07	U : 0.03	G : 0.01	A : 0.01	
A : 0.66	U : 0.13	a : 0.07	C : 0.07	G : 0.03	
G : 0.68	C : 0.13	A : 0.05	g : 0.05	U : 0.03	c : 0.01	
C : 0.70	U : 0.11	G : 0.07	c : 0.07	A : 0.01	
C : 0.80	U : 0.05	c : 0.05	G : 0.03	u : 0.01	A : 0.01	
C : 0.82	U : 0.07	c : 0.05	A : 0.01	g : 0.01	
C : 0.80	A : 0.09	c : 0.05	g : 0.01	U : 0.01	

#score	766.4705882352946
#seq	51
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_UTR_m2_run2.nuc.txt

#NT
uuuuu	chr11:85346784-85347060(+)$1	276	59	64	15.0000
UUUUU	chr3:140692446-140692706(+)$1	260	97	102	15.0000
UUUUU	chr1:52870221-52870508(+)$1	287	135	140	15.0000
UUUUU	chr5:38975577-38975838(-)$1	261	251	256	15.0000
UUUUU	chr10:28884516-28884778(+)$1	262	88	93	15.0000
UUUUU	chr1:167511398-167511656(-)$1	258	60	65	15.0000
UUUUU	chr17:57917026-57917269(+)$1	243	42	47	15.0000
UUUUU	chr3:160129601-160129866(+)$1	265	94	99	15.0000
UUUUU	chr18:55226345-55226632(-)$1	287	19	24	15.0000
UUUUU	chr17:46632845-46633093(-)$1	248	92	97	15.0000
uuuuu	chr7:11101343-11101563(+)$1	220	38	43	15.0000
UUUUU	chr12:76443175-76443419(-)$1	244	80	85	15.0000
UUUUU	chr8:61102402-61102658(-)$1	256	9	14	15.0000
UUUUU	chr10:69832793-69833054(-)$1	261	69	74	15.0000
UUUUU	chr2:28561193-28561498(+)$1	305	95	100	15.0000
UUUUU	chr10:69833299-69833554(-)$1	255	224	229	15.0000
UUUUU	chr11:47843203-47843496(-)$1	293	99	104	15.0000
UUUUU	chr11:62566016-62566279(-)$1	263	85	90	15.0000
UUUUU	chr19:10229494-10229746(-)$1	252	96	101	15.0000
UUUUU	chr3:43743598-43743839(+)$1	241	30	35	15.0000
UUUUU	chr2:8823688-8823974(+)$1	286	202	207	15.0000
UUUUU	chr14:55528285-55528549(+)$1	264	76	81	15.0000
UUUUU	chr8:29921286-29921547(-)$1	261	78	83	15.0000
UUUUU	chr8:74650437-74650696(-)$1	259	112	117	15.0000
UUUUU	chr7:155493552-155493819(+)$1	267	91	96	15.0000
UUUUU	chr11:3381633-3381911(-)$1	278	8	13	15.0000
UUUUU	chr17:46651258-46651473(-)$1	215	193	198	15.0000
uuuuu	chr14:45565513-45565771(+)$1	258	0	5	15.0000
UUUUU	chr7:77236441-77236705(+)$1	264	16	21	15.0000
UUUUU	chr12:57926663-57926918(-)$1	255	224	229	15.0000
UUUUU	chr2:8887958-8888250(-)$1	292	95	100	15.0000
UUUUU	chr17:42960386-42960716(-)$1	330	83	88	15.0000
UUUUU	chr6:43523552-43523817(-)$1	265	250	255	15.0000
UUUUU	chr3:37407458-37407738(+)$1	280	66	71	15.0000
UUUUU	chr17:46651224-46651458(-)$1	234	178	183	15.0000
UUUUU	chr4:139104305-139104537(-)$1	232	219	224	15.0000
UUUUU	chr11:85725873-85726116(-)$1	243	96	101	15.0000
UUUUU	chr1:27105436-27105660(+)$1	224	70	75	15.0000
UUUUU	chr3:38539013-38539278(+)$1	265	60	65	15.0000
UUUUU	chr4:139101808-139102048(-)$1	240	39	44	15.0000
UUUUU	chr15:23052554-23052865(-)$1	311	26	31	15.0000
UUUUU	chr16:28969914-28970191(+)$1	277	196	201	15.0000
UUUUU	chr1:67405592-67405863(+)$1	271	21	26	15.0000
UUUUU	chr3:112727142-112727397(-)$1	255	23	28	15.0000
UUUUU	chr22:32880935-32881208(+)$1	273	54	59	15.0000
UUUUU	chr11:111728287-111728580(-)$1	293	39	44	15.0000
UUUUU	chr3:197023955-197024224(-)$1	269	90	95	15.0000
UUUUU	chr5:159437400-159437619(+)$1	219	9	14	15.0000
UUUUU	chr5:179044755-179045011(-)$1	256	91	96	15.0000
UUUUU	chr8:141856616-141856900(-)$1	284	77	82	15.0000
UUUUU	chr13:111932757-111933064(+)$1	307	79	84	15.0000
UUUUU	chr2:198284881-198285151(-)$1	270	69	74	15.0000
uuuuu	chr1:110888808-110889057(+)$1	249	65	70	15.0000
UUUUU	chr1:71530667-71530931(-)$1	264	225	230	15.0000
UUUUU	chr1:153949212-153949492(-)$1	280	81	86	15.0000
UUUUU	chr17:65214784-65215066(-)$1	282	130	135	15.0000
UUUUU	chr1:224573935-224574206(-)$1	271	152	157	15.0000
UUUUU	chr3:25656940-25657185(-)$1	245	98	103	15.0000
UUUUU	chr12:111895010-111895268(-)$1	258	88	93	15.0000
uuuuu	chr1:155884160-155884377(-)$1	217	2	7	15.0000
UUUUU	chr18:33746950-33747254(+)$1	304	119	124	15.0000
UUUUU	chr8:124361558-124361785(-)$1	227	87	92	15.0000
UUUUU	chr3:33877406-33877681(+)$1	275	31	36	15.0000
UUUUU	chr19:7995936-7996189(-)$1	253	109	114	15.0000
UUUUU	chr3:44826255-44826504(+)$1	249	100	105	15.0000
UUUUU	chr18:9104016-9104280(+)$1	264	77	82	15.0000

#otherMatches

#Struct PSSM
F{DDD	chr12:57909818-57910062(+)$1	244	80	85	15.0000
:::::	chr11:85346784-85347060(+)$1	276	59	64	15.0000
dd:ii	chr3:140692446-140692706(+)$1	260	97	102	15.0000
ttttt	chr1:52870221-52870508(+)$1	287	135	140	15.0000
HHHHH	chr5:38975577-38975838(-)$1	261	251	256	15.0000
7777e	chr10:28884516-28884778(+)$1	262	88	93	15.0000
c####	chr1:167511398-167511656(-)$1	258	60	65	15.0000
GGGGG	chr17:57917026-57917269(+)$1	243	42	47	15.0000
bb22e	chr3:160129601-160129866(+)$1	265	94	99	15.0000
+++++	chr18:55226345-55226632(-)$1	287	19	24	15.0000
::::h	chr17:46632845-46633093(-)$1	248	92	97	15.0000
D::::	chr7:11101343-11101563(+)$1	220	38	43	15.0000
ddd]f	chr12:76443175-76443419(-)$1	244	80	85	15.0000
:::::	chr8:61102402-61102658(-)$1	256	9	14	15.0000
tbb]f	chr10:69832793-69833054(-)$1	261	69	74	15.0000
:::::	chr2:28561193-28561498(+)$1	305	95	100	15.0000
JJJJJ	chr10:69833299-69833554(-)$1	255	224	229	15.0000
>>>>>	chr11:47843203-47843496(-)$1	293	99	104	15.0000
:::::	chr11:62566016-62566279(-)$1	263	85	90	15.0000
hhhh$	chr19:10229494-10229746(-)$1	252	96	101	15.0000
:::::	chr3:43743598-43743839(+)$1	241	30	35	15.0000
:::::	chr2:8823688-8823974(+)$1	286	202	207	15.0000
uuuub	chr14:55528285-55528549(+)$1	264	76	81	15.0000
f]ddd	chr8:29921286-29921547(-)$1	261	78	83	15.0000
nnnne	chr8:74650437-74650696(-)$1	259	112	117	15.0000
nnnng	chr7:155493552-155493819(+)$1	267	91	96	15.0000
gnnnn	chr11:3381633-3381911(-)$1	278	8	13	15.0000
=====	chr17:46651258-46651473(-)$1	215	193	198	15.0000
:::::	chr14:45565513-45565771(+)$1	258	0	5	15.0000
mmmmf	chr7:77236441-77236705(+)$1	264	16	21	15.0000
ZZZDD	chr12:57926663-57926918(-)$1	255	224	229	15.0000
GGGG{	chr2:8887958-8888250(-)$1	292	95	100	15.0000
eee!!	chr17:42960386-42960716(-)$1	330	83	88	15.0000
:::::	chr6:43523552-43523817(-)$1	265	250	255	15.0000
5555d	chr3:37407458-37407738(+)$1	280	66	71	15.0000
fff44	chr17:46651224-46651458(-)$1	234	178	183	15.0000
fff::	chr4:139104305-139104537(-)$1	232	219	224	15.0000
=====	chr11:85725873-85726116(-)$1	243	96	101	15.0000
::fff	chr1:27105436-27105660(+)$1	224	70	75	15.0000
MMMMJ	chr3:38539013-38539278(+)$1	265	60	65	15.0000
CC{II	chr4:139101808-139102048(-)$1	240	39	44	15.0000
ggggg	chr15:23052554-23052865(-)$1	311	26	31	15.0000
dd!!b	chr16:28969914-28970191(+)$1	277	196	201	15.0000
'''''	chr1:67405592-67405863(+)$1	271	21	26	15.0000
ddmmm	chr3:112727142-112727397(-)$1	255	23	28	15.0000
=====	chr22:32880935-32881208(+)$1	273	54	59	15.0000
dd###	chr11:111728287-111728580(-)$1	293	39	44	15.0000
iiiii	chr3:197023955-197024224(-)$1	269	90	95	15.0000
KFFFF	chr5:159437400-159437619(+)$1	219	9	14	15.0000
d$$$$	chr5:179044755-179045011(-)$1	256	91	96	15.0000
h++++	chr8:141856616-141856900(-)$1	284	77	82	15.0000
66666	chr13:111932757-111933064(+)$1	307	79	84	15.0000
!eeee	chr2:198284881-198285151(-)$1	270	69	74	15.0000
eee""	chr1:110888808-110889057(+)$1	249	65	70	15.0000
:::::	chr1:71530667-71530931(-)$1	264	225	230	15.0000
=====	chr1:153949212-153949492(-)$1	280	81	86	15.0000
dmmmm	chr17:65214784-65215066(-)$1	282	130	135	15.0000
lgggg	chr1:224573935-224574206(-)$1	271	152	157	15.0000
qqqqq	chr3:25656940-25657185(-)$1	245	98	103	15.0000
+++++	chr12:111895010-111895268(-)$1	258	88	93	15.0000
:::::	chr1:155884160-155884377(-)$1	217	2	7	15.0000
55555	chr18:33746950-33747254(+)$1	304	119	124	15.0000
:::::	chr8:124361558-124361785(-)$1	227	87	92	15.0000
mmccc	chr3:33877406-33877681(+)$1	275	31	36	15.0000
=====	chr19:7995936-7996189(-)$1	253	109	114	15.0000
=====	chr3:44826255-44826504(+)$1	249	100	105	15.0000
GGGGG	chr18:9104016-9104280(+)$1	264	77	82	15.0000

#DB
(.(((	chr12:57909818-57910062(+)$1	1	80	85	15.0000
.....	chr11:85346784-85347060(+)$1	1	59	64	15.0000
)).((	chr3:140692446-140692706(+)$1	1	97	102	15.0000
.....	chr1:52870221-52870508(+)$1	1	135	140	15.0000
)))))	chr5:38975577-38975838(-)$1	1	251	256	15.0000
....)	chr10:28884516-28884778(+)$1	1	88	93	15.0000
(....	chr1:167511398-167511656(-)$1	1	60	65	15.0000
(((((	chr17:57917026-57917269(+)$1	1	42	47	15.0000
))..)	chr3:160129601-160129866(+)$1	1	94	99	15.0000
.....	chr18:55226345-55226632(-)$1	1	19	24	15.0000
....(	chr17:46632845-46633093(-)$1	1	92	97	15.0000
(....	chr7:11101343-11101563(+)$1	1	38	43	15.0000
))).)	chr12:76443175-76443419(-)$1	1	80	85	15.0000
.....	chr8:61102402-61102658(-)$1	1	9	14	15.0000
.)).)	chr10:69832793-69833054(-)$1	1	69	74	15.0000
.....	chr2:28561193-28561498(+)$1	1	95	100	15.0000
)))))	chr10:69833299-69833554(-)$1	1	224	229	15.0000
.....	chr11:47843203-47843496(-)$1	1	99	104	15.0000
.....	chr11:62566016-62566279(-)$1	1	85	90	15.0000
((((.	chr19:10229494-10229746(-)$1	1	96	101	15.0000
.....	chr3:43743598-43743839(+)$1	1	30	35	15.0000
.....	chr2:8823688-8823974(+)$1	1	202	207	15.0000
....)	chr14:55528285-55528549(+)$1	1	76	81	15.0000
).)))	chr8:29921286-29921547(-)$1	1	78	83	15.0000
....)	chr8:74650437-74650696(-)$1	1	112	117	15.0000
....)	chr7:155493552-155493819(+)$1	1	91	96	15.0000
(....	chr11:3381633-3381911(-)$1	1	8	13	15.0000
)))))	chr17:46651258-46651473(-)$1	1	193	198	15.0000
.....	chr14:45565513-45565771(+)$1	1	0	5	15.0000
....)	chr7:77236441-77236705(+)$1	1	16	21	15.0000
...))	chr12:57926663-57926918(-)$1	1	224	229	15.0000
((((.	chr2:8887958-8888250(-)$1	1	95	100	15.0000
(((..	chr17:42960386-42960716(-)$1	1	83	88	15.0000
.....	chr6:43523552-43523817(-)$1	1	250	255	15.0000
....)	chr3:37407458-37407738(+)$1	1	66	71	15.0000
)))..	chr17:46651224-46651458(-)$1	1	178	183	15.0000
)))..	chr4:139104305-139104537(-)$1	1	219	224	15.0000
)))))	chr11:85725873-85726116(-)$1	1	96	101	15.0000
..(((	chr1:27105436-27105660(+)$1	1	70	75	15.0000
....(	chr3:38539013-38539278(+)$1	1	60	65	15.0000
((.((	chr4:139101808-139102048(-)$1	1	39	44	15.0000
)))))	chr15:23052554-23052865(-)$1	1	26	31	15.0000
((..(	chr16:28969914-28970191(+)$1	1	196	201	15.0000
.....	chr1:67405592-67405863(+)$1	1	21	26	15.0000
((...	chr3:112727142-112727397(-)$1	1	23	28	15.0000
)))))	chr22:32880935-32881208(+)$1	1	54	59	15.0000
((...	chr11:111728287-111728580(-)$1	1	39	44	15.0000
)))))	chr3:197023955-197024224(-)$1	1	90	95	15.0000
.((((	chr5:159437400-159437619(+)$1	1	9	14	15.0000
(....	chr5:179044755-179045011(-)$1	1	91	96	15.0000
(....	chr8:141856616-141856900(-)$1	1	77	82	15.0000
.....	chr13:111932757-111933064(+)$1	1	79	84	15.0000
.((((	chr2:198284881-198285151(-)$1	1	69	74	15.0000
(((..	chr1:110888808-110889057(+)$1	1	65	70	15.0000
.....	chr1:71530667-71530931(-)$1	1	225	230	15.0000
(((((	chr1:153949212-153949492(-)$1	1	81	86	15.0000
(....	chr17:65214784-65215066(-)$1	1	130	135	15.0000
.))))	chr1:224573935-224574206(-)$1	1	152	157	15.0000
.....	chr3:25656940-25657185(-)$1	1	98	103	15.0000
.....	chr12:111895010-111895268(-)$1	1	88	93	15.0000
.....	chr1:155884160-155884377(-)$1	1	2	7	15.0000
.....	chr18:33746950-33747254(+)$1	1	119	124	15.0000
.....	chr8:124361558-124361785(-)$1	1	87	92	15.0000
..)))	chr3:33877406-33877681(+)$1	1	31	36	15.0000
)))))	chr19:7995936-7996189(-)$1	1	109	114	15.0000
(((((	chr3:44826255-44826504(+)$1	1	100	105	15.0000
(((((	chr18:9104016-9104280(+)$1	1	77	82	15.0000

#PSSM
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	

#score	1005.0000000000005
#seq	67
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_UTR_m2_run1.nuc.txt

#NT
CUG	chr22:32353179-32353427(+)$1	248	44	47	9.0000
CUG	chr20:62152106-62152312(+)$1	206	28	31	9.0000
CUG	chr17:49243753-49243958(+)$1	205	7	10	9.0000
CUG	chr20:62152124-62152335(+)$1	211	10	13	9.0000
CUG	chr7:107533580-107533824(+)$1	244	118	121	9.0000
CUG	chr22:21976749-21976969(+)$1	220	20	23	9.0000
CUG	chr22:38259178-38259384(+)$1	206	73	76	9.0000
CUG	chr7:4806662-4806888(+)$1	226	40	43	9.0000
CUG	chr12:56119907-56120126(-)$1	219	89	92	9.0000
CUG	chr7:100274874-100275077(+)$1	203	72	75	9.0000
CUG	chr1:19746127-19746341(-)$1	214	55	58	9.0000
CUG	chr1:31206215-31206464(-)$1	249	49	52	9.0000
CUG	chr14:23393587-23393795(-)$1	208	1	4	9.0000
CUG	chr5:95091162-95091408(+)$1	246	1	4	9.0000
CUG	chr17:56423085-56423333(-)$1	248	49	52	9.0000
CUG	chr5:180218093-180218343(-)$1	250	8	11	9.0000
cug	chr12:123998777-123999042(-)$1	265	12	15	9.0000
CUG	chr16:2013051-2013254(-)$1	203	21	24	9.0000
CUG	chr5:154196652-154196868(+)$1	216	68	71	9.0000
CUG	chr11:62459752-62460048(-)$1	296	10	13	9.0000
CUG	chr16:449312-449528(+)$1	216	6	9	9.0000
CUG	chr1:17733543-17733760(-)$1	217	46	49	9.0000
CUG	chr3:38183395-38183684(+)$1	289	24	27	9.0000
CUG	chr1:36807402-36807647(-)$1	245	0	3	9.0000
CUG	chr4:151186088-151186338(-)$1	250	117	120	9.0000
CUG	chr13:42044681-42044929(+)$1	248	21	24	9.0000
CUG	chr2:73466752-73466965(+)$1	213	49	52	9.0000
CUG	chr17:16247848-16248094(-)$1	246	55	58	9.0000
CUG	chr17:42928622-42928837(-)$1	215	20	23	9.0000
CUG	chr10:120921754-120921985(-)$1	231	11	14	9.0000
CUG	chr2:73466765-73466985(+)$1	220	36	39	9.0000
CUG	chr6:2838787-2839013(-)$1	226	141	144	9.0000
CUG	chr15:45897524-45897756(+)$1	232	105	108	9.0000
CUG	chr1:173446429-173446636(+)$1	207	32	35	9.0000
CUG	chr1:6292024-6292268(-)$1	244	91	94	9.0000
cug	chr5:177576733-177576939(-)$1	206	19	22	9.0000
CUG	chr22:29965107-29965344(-)$1	237	23	26	9.0000
CUG	chr21:40550353-40550633(-)$1	280	10	13	9.0000
CUG	chr19:5896827-5897085(-)$1	258	48	51	9.0000
CUG	chr6:43608201-43608464(+)$1	263	101	104	9.0000
CUG	chr12:49397439-49397728(-)$1	289	4	7	9.0000
CUG	chr17:8283015-8283221(-)$1	206	79	82	9.0000
CUG	chr3:12877476-12877685(-)$1	209	28	31	9.0000
CUG	chr20:57484503-57484712(+)$1	209	40	43	9.0000
CUG	chr18:9512897-9513179(+)$1	282	30	33	9.0000
CUG	chr1:70716639-70716851(+)$1	212	59	62	9.0000
CUG	chr5:180669230-180669445(-)$1	215	56	59	9.0000
CUG	chr14:77975434-77975712(-)$1	278	184	187	9.0000
CUG	chr1:167392725-167392994(+)$1	269	15	18	9.0000
cug	chr4:177250404-177250621(+)$1	217	58	61	9.0000
CUG	chr5:179147349-179147565(+)$1	216	9	12	9.0000
CUG	chr11:62327132-62327334(-)$1	202	7	10	9.0000
CUG	chr10:11893943-11894200(+)$1	257	19	22	9.0000
CUG	chr2:242275289-242275492(+)$1	203	19	22	9.0000
CUG	chr2:48027384-48027648(+)$1	264	83	86	9.0000
CUG	chr1:113456312-113456544(-)$1	232	28	31	9.0000
CUG	chr14:64867416-64867687(+)$1	271	32	35	9.0000
CUG	chr5:180666404-180666611(-)$1	207	23	26	9.0000
CUG	chr8:124346016-124346308(-)$1	292	8	11	9.0000
CUG	chr12:57626426-57626639(+)$1	213	32	35	9.0000
CUG	chr17:34842459-34842730(+)$1	271	33	36	9.0000
CUG	chr1:183522890-183523143(+)$1	253	67	70	9.0000
CUG	chr10:106072533-106072760(-)$1	227	9	12	9.0000
CUG	chr12:7054931-7055190(+)$1	259	50	53	9.0000
CUG	chr1:8938551-8938756(-)$1	205	16	19	9.0000
CUG	chr1:45244248-45244455(+)$1	207	174	177	9.0000
CUG	chr12:56119926-56120145(-)$1	219	108	111	9.0000
CUG	chr2:220118490-220118721(-)$1	231	91	94	9.0000
CUG	chr18:9536471-9536730(+)$1	259	8	11	9.0000
CUG	chr17:42928990-42929200(-)$1	210	22	25	9.0000
CUG	chr1:22404822-22405038(+)$1	216	15	18	9.0000
CUG	chr9:376874-377134(+)$1	260	48	51	9.0000
CUG	chr14:102552347-102552555(-)$1	208	61	64	9.0000
CUG	chr7:56145694-56145929(+)$1	235	33	36	9.0000
CUG	chr6:116892671-116892892(+)$1	221	10	13	9.0000
CUG	chr1:36806498-36806738(-)$1	240	8	11	9.0000
CUG	chr5:134696102-134696331(-)$1	229	12	15	9.0000
CUG	chr14:102323009-102323213(+)$1	204	2	5	9.0000
CUG	chr19:13209783-13210021(-)$1	238	102	105	9.0000
CUG	chr16:29709331-29709596(+)$1	265	110	113	9.0000
CUG	chr6:34204953-34205168(+)$1	215	7	10	9.0000
CUG	chr10:71962737-71962969(-)$1	232	17	20	9.0000
CUG	chr14:24612511-24612787(-)$1	276	60	63	9.0000
CUG	chr19:6391837-6392069(-)$1	232	21	24	9.0000
CUG	chr12:49087944-49088190(-)$1	246	130	133	9.0000
CUG	chr1:109780497-109780709(+)$1	212	19	22	9.0000
CUG	chr12:24966414-24966666(-)$1	252	74	77	9.0000
CUG	chr22:41923864-41924089(+)$1	225	29	32	9.0000
CUG	chr13:25915479-25915747(+)$1	268	19	22	9.0000
CUG	chr19:6361779-6361985(+)$1	206	44	47	9.0000
CUG	chr16:89627995-89628207(+)$1	212	33	36	9.0000
CUG	chr6:36446797-36447019(+)$1	222	48	51	9.0000
CUG	chr3:184040770-184041009(+)$1	239	11	14	9.0000
CUG	chr11:126147441-126147680(+)$1	239	18	21	9.0000
CUG	chr14:35031555-35031782(-)$1	227	8	11	9.0000
CUG	chr3:20017033-20017283(+)$1	250	59	62	9.0000
CUG	chr16:30094758-30094963(+)$1	205	43	46	9.0000
CUG	chr16:30785968-30786285(+)$1	317	0	3	9.0000
CUG	chr8:101965395-101965694(-)$1	299	10	13	9.0000

#otherMatches

#Struct PSSM
CCC	chr7:150710223-150710523(+)$1	300	0	3	9.0000
33b	chr22:32353179-32353427(+)$1	248	44	47	9.0000
:::	chr20:62152106-62152312(+)$1	206	28	31	9.0000
[ii	chr17:49243753-49243958(+)$1	205	7	10	9.0000
ooo	chr20:62152124-62152335(+)$1	211	10	13	9.0000
:dd	chr7:107533580-107533824(+)$1	244	118	121	9.0000
""c	chr22:21976749-21976969(+)$1	220	20	23	9.0000
cc2	chr22:38259178-38259384(+)$1	206	73	76	9.0000
ccc	chr7:4806662-4806888(+)$1	226	40	43	9.0000
E{F	chr12:56119907-56120126(-)$1	219	89	92	9.0000
ggE	chr7:100274874-100275077(+)$1	203	72	75	9.0000
::D	chr1:19746127-19746341(-)$1	214	55	58	9.0000
b[b	chr1:31206215-31206464(-)$1	249	49	52	9.0000
eee	chr14:23393587-23393795(-)$1	208	1	4	9.0000
::c	chr5:95091162-95091408(+)$1	246	1	4	9.0000
cc2	chr17:56423085-56423333(-)$1	248	49	52	9.0000
ccc	chr5:180218093-180218343(-)$1	250	8	11	9.0000
ccc	chr12:123998777-123999042(-)$1	265	12	15	9.0000
[a[	chr16:2013051-2013254(-)$1	203	21	24	9.0000
sss	chr5:154196652-154196868(+)$1	216	68	71	9.0000
ddd	chr11:62459752-62460048(-)$1	296	10	13	9.0000
lll	chr16:449312-449528(+)$1	216	6	9	9.0000
===	chr1:17733543-17733760(-)$1	217	46	49	9.0000
:::	chr3:38183395-38183684(+)$1	289	24	27	9.0000
EEE	chr1:36807402-36807647(-)$1	245	0	3	9.0000
:::	chr4:151186088-151186338(-)$1	250	117	120	9.0000
{FF	chr13:42044681-42044929(+)$1	248	21	24	9.0000
fff	chr2:73466752-73466965(+)$1	213	49	52	9.0000
eee	chr17:16247848-16248094(-)$1	246	55	58	9.0000
FFF	chr17:42928622-42928837(-)$1	215	20	23	9.0000
fff	chr10:120921754-120921985(-)$1	231	11	14	9.0000
eee	chr2:73466765-73466985(+)$1	220	36	39	9.0000
[cc	chr6:2838787-2839013(-)$1	226	141	144	9.0000
555	chr15:45897524-45897756(+)$1	232	105	108	9.0000
===	chr1:173446429-173446636(+)$1	207	32	35	9.0000
eee	chr1:6292024-6292268(-)$1	244	91	94	9.0000
eee	chr5:177576733-177576939(-)$1	206	19	22	9.0000
KKC	chr22:29965107-29965344(-)$1	237	23	26	9.0000
GGG	chr21:40550353-40550633(-)$1	280	10	13	9.0000
d[a	chr19:5896827-5897085(-)$1	258	48	51	9.0000
!!c	chr6:43608201-43608464(+)$1	263	101	104	9.0000
HHH	chr12:49397439-49397728(-)$1	289	4	7	9.0000
777	chr17:8283015-8283221(-)$1	206	79	82	9.0000
FFF	chr3:12877476-12877685(-)$1	209	28	31	9.0000
ddd	chr20:57484503-57484712(+)$1	209	40	43	9.0000
JJJ	chr18:9512897-9513179(+)$1	282	30	33	9.0000
ccc	chr1:70716639-70716851(+)$1	212	59	62	9.0000
cc2	chr5:180669230-180669445(-)$1	215	56	59	9.0000
===	chr14:77975434-77975712(-)$1	278	184	187	9.0000
HHH	chr1:167392725-167392994(+)$1	269	15	18	9.0000
ccc	chr4:177250404-177250621(+)$1	217	58	61	9.0000
KKH	chr5:179147349-179147565(+)$1	216	9	12	9.0000
JJJ	chr11:62327132-62327334(-)$1	202	7	10	9.0000
ddd	chr10:11893943-11894200(+)$1	257	19	22	9.0000
dd:	chr2:242275289-242275492(+)$1	203	19	22	9.0000
FFF	chr2:48027384-48027648(+)$1	264	83	86	9.0000
C:b	chr1:113456312-113456544(-)$1	232	28	31	9.0000
^^^	chr14:64867416-64867687(+)$1	271	32	35	9.0000
PPP	chr5:180666404-180666611(-)$1	207	23	26	9.0000
EEE	chr8:124346016-124346308(-)$1	292	8	11	9.0000
22f	chr12:57626426-57626639(+)$1	213	32	35	9.0000
hhh	chr17:34842459-34842730(+)$1	271	33	36	9.0000
!bb	chr1:183522890-183523143(+)$1	253	67	70	9.0000
$$$	chr10:106072533-106072760(-)$1	227	9	12	9.0000
ccc	chr12:7054931-7055190(+)$1	259	50	53	9.0000
ccc	chr1:8938551-8938756(-)$1	205	16	19	9.0000
CDD	chr1:45244248-45244455(+)$1	207	174	177	9.0000
ddd	chr12:56119926-56120145(-)$1	219	108	111	9.0000
fdd	chr2:220118490-220118721(-)$1	231	91	94	9.0000
B{D	chr18:9536471-9536730(+)$1	259	8	11	9.0000
ddd	chr17:42928990-42929200(-)$1	210	22	25	9.0000
c!!	chr1:22404822-22405038(+)$1	216	15	18	9.0000
KKD	chr9:376874-377134(+)$1	260	48	51	9.0000
!cc	chr14:102552347-102552555(-)$1	208	61	64	9.0000
ebb	chr7:56145694-56145929(+)$1	235	33	36	9.0000
==n	chr6:116892671-116892892(+)$1	221	10	13	9.0000
""f	chr1:36806498-36806738(-)$1	240	8	11	9.0000
CCC	chr5:134696102-134696331(-)$1	229	12	15	9.0000
::D	chr14:102323009-102323213(+)$1	204	2	5	9.0000
ff$	chr19:13209783-13210021(-)$1	238	102	105	9.0000
cc]	chr16:29709331-29709596(+)$1	265	110	113	9.0000
eee	chr6:34204953-34205168(+)$1	215	7	10	9.0000
qqc	chr10:71962737-71962969(-)$1	232	17	20	9.0000
ddd	chr14:24612511-24612787(-)$1	276	60	63	9.0000
[a[	chr19:6391837-6392069(-)$1	232	21	24	9.0000
eee	chr12:49087944-49088190(-)$1	246	130	133	9.0000
ggg	chr1:109780497-109780709(+)$1	212	19	22	9.0000
r==	chr12:24966414-24966666(-)$1	252	74	77	9.0000
eee	chr22:41923864-41924089(+)$1	225	29	32	9.0000
DDD	chr13:25915479-25915747(+)$1	268	19	22	9.0000
F:h	chr19:6361779-6361985(+)$1	206	44	47	9.0000
hhh	chr16:89627995-89628207(+)$1	212	33	36	9.0000
cc]	chr6:36446797-36447019(+)$1	222	48	51	9.0000
B{G	chr3:184040770-184041009(+)$1	239	11	14	9.0000
GGG	chr11:126147441-126147680(+)$1	239	18	21	9.0000
::J	chr14:35031555-35031782(-)$1	227	8	11	9.0000
!!e	chr3:20017033-20017283(+)$1	250	59	62	9.0000
f[e	chr16:30094758-30094963(+)$1	205	43	46	9.0000
:dd	chr16:30785968-30786285(+)$1	317	0	3	9.0000
ggg	chr8:101965395-101965694(-)$1	299	10	13	9.0000

#DB
(((	chr7:150710223-150710523(+)$1	1	0	3	9.0000
..)	chr22:32353179-32353427(+)$1	1	44	47	9.0000
...	chr20:62152106-62152312(+)$1	1	28	31	9.0000
.((	chr17:49243753-49243958(+)$1	1	7	10	9.0000
...	chr20:62152124-62152335(+)$1	1	10	13	9.0000
.((	chr7:107533580-107533824(+)$1	1	118	121	9.0000
..(	chr22:21976749-21976969(+)$1	1	20	23	9.0000
)).	chr22:38259178-38259384(+)$1	1	73	76	9.0000
(((	chr7:4806662-4806888(+)$1	1	40	43	9.0000
(.(	chr12:56119907-56120126(-)$1	1	89	92	9.0000
))(	chr7:100274874-100275077(+)$1	1	72	75	9.0000
..)	chr1:19746127-19746341(-)$1	1	55	58	9.0000
(.(	chr1:31206215-31206464(-)$1	1	49	52	9.0000
(((	chr14:23393587-23393795(-)$1	1	1	4	9.0000
..(	chr5:95091162-95091408(+)$1	1	1	4	9.0000
)).	chr17:56423085-56423333(-)$1	1	49	52	9.0000
(((	chr5:180218093-180218343(-)$1	1	8	11	9.0000
(((	chr12:123998777-123999042(-)$1	1	12	15	9.0000
.(.	chr16:2013051-2013254(-)$1	1	21	24	9.0000
...	chr5:154196652-154196868(+)$1	1	68	71	9.0000
(((	chr11:62459752-62460048(-)$1	1	10	13	9.0000
...	chr16:449312-449528(+)$1	1	6	9	9.0000
(((	chr1:17733543-17733760(-)$1	1	46	49	9.0000
...	chr3:38183395-38183684(+)$1	1	24	27	9.0000
(((	chr1:36807402-36807647(-)$1	1	0	3	9.0000
...	chr4:151186088-151186338(-)$1	1	117	120	9.0000
.((	chr13:42044681-42044929(+)$1	1	21	24	9.0000
(((	chr2:73466752-73466965(+)$1	1	49	52	9.0000
(((	chr17:16247848-16248094(-)$1	1	55	58	9.0000
(((	chr17:42928622-42928837(-)$1	1	20	23	9.0000
(((	chr10:120921754-120921985(-)$1	1	11	14	9.0000
)))	chr2:73466765-73466985(+)$1	1	36	39	9.0000
.((	chr6:2838787-2839013(-)$1	1	141	144	9.0000
...	chr15:45897524-45897756(+)$1	1	105	108	9.0000
(((	chr1:173446429-173446636(+)$1	1	32	35	9.0000
(((	chr1:6292024-6292268(-)$1	1	91	94	9.0000
(((	chr5:177576733-177576939(-)$1	1	19	22	9.0000
..(	chr22:29965107-29965344(-)$1	1	23	26	9.0000
(((	chr21:40550353-40550633(-)$1	1	10	13	9.0000
(.(	chr19:5896827-5897085(-)$1	1	48	51	9.0000
..(	chr6:43608201-43608464(+)$1	1	101	104	9.0000
(((	chr12:49397439-49397728(-)$1	1	4	7	9.0000
...	chr17:8283015-8283221(-)$1	1	79	82	9.0000
(((	chr3:12877476-12877685(-)$1	1	28	31	9.0000
)))	chr20:57484503-57484712(+)$1	1	40	43	9.0000
(((	chr18:9512897-9513179(+)$1	1	30	33	9.0000
(((	chr1:70716639-70716851(+)$1	1	59	62	9.0000
)).	chr5:180669230-180669445(-)$1	1	56	59	9.0000
(((	chr14:77975434-77975712(-)$1	1	184	187	9.0000
(((	chr1:167392725-167392994(+)$1	1	15	18	9.0000
(((	chr4:177250404-177250621(+)$1	1	58	61	9.0000
..(	chr5:179147349-179147565(+)$1	1	9	12	9.0000
(((	chr11:62327132-62327334(-)$1	1	7	10	9.0000
)))	chr10:11893943-11894200(+)$1	1	19	22	9.0000
)).	chr2:242275289-242275492(+)$1	1	19	22	9.0000
(((	chr2:48027384-48027648(+)$1	1	83	86	9.0000
(.(	chr1:113456312-113456544(-)$1	1	28	31	9.0000
...	chr14:64867416-64867687(+)$1	1	32	35	9.0000
...	chr5:180666404-180666611(-)$1	1	23	26	9.0000
(((	chr8:124346016-124346308(-)$1	1	8	11	9.0000
..)	chr12:57626426-57626639(+)$1	1	32	35	9.0000
(((	chr17:34842459-34842730(+)$1	1	33	36	9.0000
.((	chr1:183522890-183523143(+)$1	1	67	70	9.0000
...	chr10:106072533-106072760(-)$1	1	9	12	9.0000
(((	chr12:7054931-7055190(+)$1	1	50	53	9.0000
(((	chr1:8938551-8938756(-)$1	1	16	19	9.0000
)))	chr1:45244248-45244455(+)$1	1	174	177	9.0000
)))	chr12:56119926-56120145(-)$1	1	108	111	9.0000
(((	chr2:220118490-220118721(-)$1	1	91	94	9.0000
(.(	chr18:9536471-9536730(+)$1	1	8	11	9.0000
(((	chr17:42928990-42929200(-)$1	1	22	25	9.0000
(..	chr1:22404822-22405038(+)$1	1	15	18	9.0000
..(	chr9:376874-377134(+)$1	1	48	51	9.0000
.((	chr14:102552347-102552555(-)$1	1	61	64	9.0000
(((	chr7:56145694-56145929(+)$1	1	33	36	9.0000
((.	chr6:116892671-116892892(+)$1	1	10	13	9.0000
..(	chr1:36806498-36806738(-)$1	1	8	11	9.0000
(((	chr5:134696102-134696331(-)$1	1	12	15	9.0000
..(	chr14:102323009-102323213(+)$1	1	2	5	9.0000
((.	chr19:13209783-13210021(-)$1	1	102	105	9.0000
)).	chr16:29709331-29709596(+)$1	1	110	113	9.0000
(((	chr6:34204953-34205168(+)$1	1	7	10	9.0000
..)	chr10:71962737-71962969(-)$1	1	17	20	9.0000
)))	chr14:24612511-24612787(-)$1	1	60	63	9.0000
.(.	chr19:6391837-6392069(-)$1	1	21	24	9.0000
)))	chr12:49087944-49088190(-)$1	1	130	133	9.0000
(((	chr1:109780497-109780709(+)$1	1	19	22	9.0000
.))	chr12:24966414-24966666(-)$1	1	74	77	9.0000
)))	chr22:41923864-41924089(+)$1	1	29	32	9.0000
(((	chr13:25915479-25915747(+)$1	1	19	22	9.0000
(.(	chr19:6361779-6361985(+)$1	1	44	47	9.0000
(((	chr16:89627995-89628207(+)$1	1	33	36	9.0000
)).	chr6:36446797-36447019(+)$1	1	48	51	9.0000
(.(	chr3:184040770-184041009(+)$1	1	11	14	9.0000
(((	chr11:126147441-126147680(+)$1	1	18	21	9.0000
..(	chr14:35031555-35031782(-)$1	1	8	11	9.0000
..(	chr3:20017033-20017283(+)$1	1	59	62	9.0000
(.(	chr16:30094758-30094963(+)$1	1	43	46	9.0000
.((	chr16:30785968-30786285(+)$1	1	0	3	9.0000
(((	chr8:101965395-101965694(-)$1	1	10	13	9.0000

#PSSM
C : 0.97	c : 0.03	
U : 0.97	u : 0.03	
G : 0.97	g : 0.03	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_transcript_m3_run1.nuc.txt

#NT
uuuuauuaucuuuca	chr9:37200047-37200283(+)$1	236	169	184	18.3653
UUUGCUUCUCUGUUU	chr17:6900445-6900771(-)$1	326	118	133	21.6346
UUUUCUCCUCUGUCU	chr6:32153754-32153979(-)$1	225	117	132	20.7692
ucuccuuuucuuuua	chr3:128452370-128452653(+)$1	283	141	156	19.0384
UUUUUUAUUCUAUUU	chr3:141245163-141245453(+)$1	290	18	33	21.3461
uguucguuucuuuuu	chr7:7240240-7240538(+)$1	298	76	91	22.3076
UUUUCUUCUCUUCUU	chr16:30733716-30734005(+)$1	289	85	100	25.2884
UUUCCUUUUCCCUUU	chr9:101985334-101985663(+)$1	329	136	151	19.9038
uuuucuuuccucucu	chr11:32919490-32919742(+)$1	252	103	118	22.5961
gucucuuuccuuucu	chr19:18457213-18457463(+)$1	250	116	131	17.9807
uuuuguuuacuguuu	chr7:110902184-110902441(-)$1	257	231	246	20.2884
CUUCCUUUUCUUGUU	chr2:120689622-120689912(+)$1	290	105	120	18.9423
uucucuucucuuuuu	chr2:109217316-109217555(+)$1	239	63	78	26.0576
ucuucucuucuuuug	chr1:65785385-65785666(+)$1	281	113	128	20.0961
UGUUCUAUUCUUUCU	chr6:36173015-36173276(+)$1	261	117	132	21.3461
uuuucuucccuuuuc	chrX:11384848-11385166(-)$1	318	0	15	21.5384
uuuucuauucuuugc	chr22:22213985-22214269(-)$1	284	95	110	20.3846
uuguuuuuuccuUUu	chr21:40842911-40843205(+)$1	294	78	93	20.1923
UUUUUUCCUCUUCUU	chr19:45911951-45912223(-)$1	272	1	16	19.5192
UUUUCCCAUCUUUAU	chr2:210872290-210872553(+)$1	263	80	95	17.8846
uucuuuuuuguuucu	chr5:59975150-59975417(-)$1	267	41	56	18.8461
uuuucuuuucuuuug	chr13:19596738-19597031(-)$1	293	141	156	27.1153
uuuucuuuccuuccu	chr4:68696303-68696568(+)$1	265	92	107	21.5384
uuuuuucuucuuuuu	chr16:78759947-78760250(+)$1	303	175	190	25.1923
uuuuuuguucuuuug	chrX:40581632-40581902(-)$1	270	205	220	20.6730
uuuucuuuucuuuuu	chr2:69643021-69643326(-)$1	305	80	95	30.9615
UUAUCUUUUCUUUAG	chrX:65421111-65421413(+)$1	302	263	278	20.4807
UUCUCUUCCCUUUUU	chr11:63607221-63607459(+)$1	238	90	105	22.4999
UUUCCUCUUCUCUUU	chr3:142055143-142055385(-)$1	242	111	126	21.3461
UUCUCUCUUCUCUUU	chr12:53909533-53909783(-)$1	250	167	182	22.1153
UUUUCUUCUUUCUUU	chr8:106481488-106481745(+)$1	257	162	177	22.3076
UUUUCCUCUCCUUUU	chr7:140532136-140532420(-)$1	284	131	146	20.5769
uuuuauucucuccuu	chr18:9918378-9918675(+)$1	297	18	33	19.0384
CCUUCUUUUCUAUUU	chr19:19498430-19498698(+)$1	268	108	123	19.4230
UUUUCUUCUGUUUAU	chr3:43455422-43455726(-)$1	304	114	129	22.0192
auuucuuuucuuuau	chr5:70914264-70914546(+)$1	282	250	265	23.7499
uucuguauucuuucu	chr4:56829229-56829476(+)$1	247	10	25	19.1346
cuuucuuuucuuucu	chr19:6814629-6814891(+)$1	262	3	18	24.9038
uuuccuugucuucuu	chr8:74501987-74502301(-)$1	314	105	120	20.0961
uucuuuuuucuuuuu	chr12:39823482-39823753(-)$1	271	56	71	25.0961
uuuuuuuuuuuuucu	chr13:21359773-21360072(-)$1	299	251	266	22.1153
uuuucuucucucucu	chr11:107667902-107668212(-)$1	310	93	108	24.3269
uugucuuuuuuuuuu	chr2:240924704-240924995(-)$1	291	85	100	23.3653
uuugccuugcuuuuu	chr7:50414148-50414422(+)$1	274	94	109	18.6538
uuuucuucucucucu	chr13:101104291-101104639(+)$1	348	160	175	24.3269
uuuucuucacuugcu	chr15:72405631-72405932(-)$1	301	113	128	19.0384
UUGUUUUUUCUUUUU	chr10:88518891-88519198(+)$1	307	284	299	24.6153
ucuuccuuucuuuuu	chrX:108956055-108956302(-)$1	247	81	96	22.7884
uuuucuucucuuuuu	chr4:170575232-170575574(+)$1	342	92	107	29.1346
cucucuuuuuuuuuu	chr1:227326006-227326295(-)$1	289	52	67	19.8076
uuuucuuuucucuuu	chr9:35713566-35713822(-)$1	256	91	106	28.1730

#otherMatches

#Struct PSSM
oooobb:::::::::	chr15:44919577-44919862(-)$1	285	93	108	21.0576
:::::::::::::::	chr9:37200047-37200283(+)$1	236	169	184	18.3653
:::bboooooobb::	chr17:6900445-6900771(-)$1	326	118	133	21.6346
xxxxxxxxxxxdddd	chr6:32153754-32153979(-)$1	225	117	132	20.7692
wwwwwwwwwwwwwgg	chr3:128452370-128452653(+)$1	283	141	156	19.0384
^^^^^^^^^^^^^^^	chr3:141245163-141245453(+)$1	290	18	33	21.3461
ccc::::::::::::	chr7:7240240-7240538(+)$1	298	76	91	22.3076
4==========dddd	chr16:30733716-30734005(+)$1	289	85	100	25.2884
:::::::::::::::	chr9:101985334-101985663(+)$1	329	136	151	19.9038
:::::::::::::::	chr11:32919490-32919742(+)$1	252	103	118	22.5961
:::::::::::::::	chr19:18457213-18457463(+)$1	250	116	131	17.9807
iii::::eeeeerrr	chr7:110902184-110902441(-)$1	257	231	246	20.2884
^^^^^^^^^^eeeee	chr2:120689622-120689912(+)$1	290	105	120	18.9423
:::::::::::::::	chr2:109217316-109217555(+)$1	239	63	78	26.0576
:::::::::::::::	chr1:65785385-65785666(+)$1	281	113	128	20.0961
:::::::::::eeee	chr6:36173015-36173276(+)$1	261	117	132	21.3461
:::::IIIIIIIII:	chrX:11384848-11385166(-)$1	318	0	15	21.5384
^^^^^^^^^^^^ddd	chr22:22213985-22214269(-)$1	284	95	110	20.3846
qqqqqqeeeee::::	chr21:40842911-40843205(+)$1	294	78	93	20.1923
:::::::::::::::	chr19:45911951-45912223(-)$1	272	1	16	19.5192
::::::::::hhhhh	chr2:210872290-210872553(+)$1	263	80	95	17.8846
FWWWWWWWWWWWWWW	chr5:59975150-59975417(-)$1	267	41	56	18.8461
^^^^^^^^^^^^^^^	chr13:19596738-19597031(-)$1	293	141	156	27.1153
oggggggg4444eee	chr4:68696303-68696568(+)$1	265	92	107	21.5384
^^^^^^^^^^^^^^^	chr16:78759947-78760250(+)$1	303	175	190	25.1923
:::::::::::::::	chrX:40581632-40581902(-)$1	270	205	220	20.6730
:::::::::::::::	chr2:69643021-69643326(-)$1	305	80	95	30.9615
]ggggggg55555bb	chrX:65421111-65421413(+)$1	302	263	278	20.4807
e^^^^^^^^^^^^^^	chr11:63607221-63607459(+)$1	238	90	105	22.4999
:::::::::::::::	chr3:142055143-142055385(-)$1	242	111	126	21.3461
^^^^^^^^^^^^^^^	chr12:53909533-53909783(-)$1	250	167	182	22.1153
:::::::::::::::	chr8:106481488-106481745(+)$1	257	162	177	22.3076
:::::::::FFFFFF	chr7:140532136-140532420(-)$1	284	131	146	20.5769
:::::::::::::::	chr18:9918378-9918675(+)$1	297	18	33	19.0384
888888dddd00000	chr19:19498430-19498698(+)$1	268	108	123	19.4230
vvvvvvvvva22ccc	chr3:43455422-43455726(-)$1	304	114	129	22.0192
EEEEFFFFFF:::::	chr5:70914264-70914546(+)$1	282	250	265	23.7499
:::::::::::::::	chr4:56829229-56829476(+)$1	247	10	25	19.1346
:::::::::::::::	chr19:6814629-6814891(+)$1	262	3	18	24.9038
::::FFFFFF:::::	chr8:74501987-74502301(-)$1	314	105	120	20.0961
+++++++++++++++	chr12:39823482-39823753(-)$1	271	56	71	25.0961
xxxxxxxxxxxxxxe	chr13:21359773-21360072(-)$1	299	251	266	22.1153
:::::::::::::::	chr11:107667902-107668212(-)$1	310	93	108	24.3269
dddxxxxxxxxxxxx	chr2:240924704-240924995(-)$1	291	85	100	23.3653
mmmbb:::EEEEE??	chr7:50414148-50414422(+)$1	274	94	109	18.6538
:::::::::::::::	chr13:101104291-101104639(+)$1	348	160	175	24.3269
uuuuuuuuuuuuddd	chr15:72405631-72405932(-)$1	301	113	128	19.0384
:::::::::::::::	chr10:88518891-88519198(+)$1	307	284	299	24.6153
:::::::::::::::	chrX:108956055-108956302(-)$1	247	81	96	22.7884
:::::::::::::::	chr4:170575232-170575574(+)$1	342	92	107	29.1346
:::::::::::::::	chr1:227326006-227326295(-)$1	289	52	67	19.8076
:::::::::::::::	chr9:35713566-35713822(-)$1	256	91	106	28.1730

#DB
....)).........	chr15:44919577-44919862(-)$1	1	93	108	21.0576
...............	chr9:37200047-37200283(+)$1	1	169	184	18.3653
...((......))..	chr17:6900445-6900771(-)$1	1	118	133	21.6346
...........))))	chr6:32153754-32153979(-)$1	1	117	132	20.7692
.............))	chr3:128452370-128452653(+)$1	1	141	156	19.0384
...............	chr3:141245163-141245453(+)$1	1	18	33	21.3461
)))............	chr7:7240240-7240538(+)$1	1	76	91	22.3076
.))))))))))))))	chr16:30733716-30734005(+)$1	1	85	100	25.2884
...............	chr9:101985334-101985663(+)$1	1	136	151	19.9038
...............	chr11:32919490-32919742(+)$1	1	103	118	22.5961
...............	chr19:18457213-18457463(+)$1	1	116	131	17.9807
)))....(((((...	chr7:110902184-110902441(-)$1	1	231	246	20.2884
..........)))))	chr2:120689622-120689912(+)$1	1	105	120	18.9423
...............	chr2:109217316-109217555(+)$1	1	63	78	26.0576
...............	chr1:65785385-65785666(+)$1	1	113	128	20.0961
...........((((	chr6:36173015-36173276(+)$1	1	117	132	21.3461
.....(((((((((.	chrX:11384848-11385166(-)$1	1	0	15	21.5384
............)))	chr22:22213985-22214269(-)$1	1	95	110	20.3846
......)))))....	chr21:40842911-40843205(+)$1	1	78	93	20.1923
...............	chr19:45911951-45912223(-)$1	1	1	16	19.5192
..........(((((	chr2:210872290-210872553(+)$1	1	80	95	17.8846
(..............	chr5:59975150-59975417(-)$1	1	41	56	18.8461
...............	chr13:19596738-19597031(-)$1	1	141	156	27.1153
.)))))))....)))	chr4:68696303-68696568(+)$1	1	92	107	21.5384
...............	chr16:78759947-78760250(+)$1	1	175	190	25.1923
...............	chrX:40581632-40581902(-)$1	1	205	220	20.6730
...............	chr2:69643021-69643326(-)$1	1	80	95	30.9615
.))))))).....))	chrX:65421111-65421413(+)$1	1	263	278	20.4807
(..............	chr11:63607221-63607459(+)$1	1	90	105	22.4999
...............	chr3:142055143-142055385(-)$1	1	111	126	21.3461
...............	chr12:53909533-53909783(-)$1	1	167	182	22.1153
...............	chr8:106481488-106481745(+)$1	1	162	177	22.3076
.........))))))	chr7:140532136-140532420(-)$1	1	131	146	20.5769
...............	chr18:9918378-9918675(+)$1	1	18	33	19.0384
......)))).....	chr19:19498430-19498698(+)$1	1	108	123	19.4230
.........)..)))	chr3:43455422-43455726(-)$1	1	114	129	22.0192
)))))))))).....	chr5:70914264-70914546(+)$1	1	250	265	23.7499
...............	chr4:56829229-56829476(+)$1	1	10	25	19.1346
...............	chr19:6814629-6814891(+)$1	1	3	18	24.9038
....((((((.....	chr8:74501987-74502301(-)$1	1	105	120	20.0961
...............	chr12:39823482-39823753(-)$1	1	56	71	25.0961
..............)	chr13:21359773-21360072(-)$1	1	251	266	22.1153
...............	chr11:107667902-107668212(-)$1	1	93	108	24.3269
(((............	chr2:240924704-240924995(-)$1	1	85	100	23.3653
...))...)))))..	chr7:50414148-50414422(+)$1	1	94	109	18.6538
...............	chr13:101104291-101104639(+)$1	1	160	175	24.3269
............)))	chr15:72405631-72405932(-)$1	1	113	128	19.0384
...............	chr10:88518891-88519198(+)$1	1	284	299	24.6153
...............	chrX:108956055-108956302(-)$1	1	81	96	22.7884
...............	chr4:170575232-170575574(+)$1	1	92	107	29.1346
...............	chr1:227326006-227326295(-)$1	1	52	67	19.8076
...............	chr9:35713566-35713822(-)$1	1	91	106	28.1730

#PSSM
u : 0.57	U : 0.30	C : 0.03	c : 0.03	g : 0.01	a : 0.01	
u : 0.57	U : 0.30	c : 0.05	g : 0.01	G : 0.01	C : 0.01	
u : 0.49	U : 0.26	c : 0.11	g : 0.03	C : 0.03	A : 0.01	G : 0.01	
u : 0.59	U : 0.26	C : 0.05	c : 0.03	G : 0.01	g : 0.01	
c : 0.44	C : 0.28	u : 0.11	g : 0.05	U : 0.05	a : 0.03	
u : 0.59	U : 0.30	C : 0.03	c : 0.03	g : 0.01	
u : 0.53	U : 0.21	C : 0.09	c : 0.05	A : 0.03	a : 0.03	g : 0.01	
u : 0.48	U : 0.17	C : 0.15	c : 0.13	a : 0.01	A : 0.01	g : 0.01	
u : 0.49	U : 0.32	c : 0.09	a : 0.03	C : 0.01	g : 0.01	
c : 0.57	C : 0.30	u : 0.05	g : 0.01	U : 0.01	G : 0.01	
u : 0.63	U : 0.30	C : 0.03	c : 0.01	
u : 0.53	U : 0.19	c : 0.09	C : 0.07	G : 0.03	A : 0.03	g : 0.01	
u : 0.55	U : 0.30	c : 0.05	C : 0.03	G : 0.01	g : 0.01	
u : 0.38	U : 0.26	c : 0.21	A : 0.05	C : 0.03	g : 0.01	a : 0.01	
u : 0.51	U : 0.32	g : 0.05	a : 0.03	c : 0.03	G : 0.01	

#score	1139.9999999999993
#seq	52
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_CDS_m3_run2.nuc.txt

#NT
ACUCCUAC	chrM:7926-8134(+)$1	208	15	23	20.0344
ACUCCUAC	chrM:10756-10983(+)$1	227	216	224	20.0344
ACUCCUAC	chrM:7777-7983(+)$1	206	164	172	20.0344
ACCCCUAC	chrM:10172-10406(+)$1	234	105	113	16.7586
ACUCCUGC	chrM:8594-8842(+)$1	248	190	198	17.7931
ACUCCUAC	chrM:10783-10991(+)$1	208	189	197	20.0344
ACUCCUAC	chrM:7793-8004(+)$1	211	148	156	20.0344
ACUCCAGC	chrM:9490-9751(+)$1	261	24	32	13.1379
ACUCCUAC	chrM:7804-8041(+)$1	237	137	145	20.0344
ACUCAUGC	chrM:9029-9279(+)$1	250	4	12	13.1379
ACUCCUAG	chrM:15566-15817(+)$1	251	158	166	15.7241
ACCCCUGC	chr19:4037224-4037474(+)$1	250	6	14	14.5172
AGUCCUAC	chrM:6473-6699(+)$1	226	6	14	15.7241
ACUCCUAC	chrM:7783-7993(+)$1	210	158	166	20.0344
ACCCCUAC	chrM:10148-10372(+)$1	224	129	137	16.7586
CCUCCUAC	chrM:9652-9867(+)$1	215	76	84	15.7241
ACUCCUAC	chrM:7742-7977(+)$1	235	199	207	20.0344
ACUCCUAC	chrM:10804-11048(+)$1	244	168	176	20.0344
ACUCCUAG	chrM:15617-15873(+)$1	256	107	115	15.7241
ACUUCUGC	chr4:110745473-110745739(+)$1	266	143	151	13.1379
ACUCCUAC	chrM:5311-5535(+)$1	224	163	171	20.0344
ACUCCUAC	chrM:5335-5594(+)$1	259	139	147	20.0344
ACCCCUAC	chrM:10206-10416(+)$1	210	71	79	16.7586
ACCCCUAC	chrM:10126-10348(+)$1	222	151	159	16.7586
AUUCCUGC	chrM:13132-13377(+)$1	245	179	187	13.6551
ACUCCUAC	chrM:10792-11004(+)$1	212	180	188	20.0344
AUUCCUGC	chrM:13177-13404(+)$1	227	134	142	13.6551
CCUCCUAC	chrM:9720-9938(+)$1	218	8	16	15.7241

#otherMatches

#Struct PSSM
::::DDDD	chrM:8566-8794(+)$1	228	218	226	17.7931
F{BB::::	chrM:7926-8134(+)$1	208	15	23	20.0344
::::::::	chrM:10756-10983(+)$1	227	216	224	20.0344
::::::::	chrM:7777-7983(+)$1	206	164	172	20.0344
$$$$$ccc	chrM:10172-10406(+)$1	234	105	113	16.7586
::::::cc	chrM:8594-8842(+)$1	248	190	198	17.7931
::::::::	chrM:10783-10991(+)$1	208	189	197	20.0344
^^^^^^^^	chrM:7793-8004(+)$1	211	148	156	20.0344
:::::::e	chrM:9490-9751(+)$1	261	24	32	13.1379
^^^^^^^^	chrM:7804-8041(+)$1	237	137	145	20.0344
::EEEEE:	chrM:9029-9279(+)$1	250	4	12	13.1379
]bb22ccc	chrM:15566-15817(+)$1	251	158	166	15.7241
[cccccca	chr19:4037224-4037474(+)$1	250	6	14	14.5172
ggg"""cc	chrM:6473-6699(+)$1	226	6	14	15.7241
^^^^^^^^	chrM:7783-7993(+)$1	210	158	166	20.0344
^^^^^^^^	chrM:10148-10372(+)$1	224	129	137	16.7586
::CCCLLL	chrM:9652-9867(+)$1	215	76	84	15.7241
::::::::	chrM:7742-7977(+)$1	235	199	207	20.0344
::::::::	chrM:10804-11048(+)$1	244	168	176	20.0344
]bb22ccc	chrM:15617-15873(+)$1	256	107	115	15.7241
eqqqqqqq	chr4:110745473-110745739(+)$1	266	143	151	13.1379
::::::::	chrM:5311-5535(+)$1	224	163	171	20.0344
::::::::	chrM:5335-5594(+)$1	259	139	147	20.0344
$$$$$ccc	chrM:10206-10416(+)$1	210	71	79	16.7586
::::::::	chrM:10126-10348(+)$1	222	151	159	16.7586
EE::::ff	chrM:13132-13377(+)$1	245	179	187	13.6551
::::::::	chrM:10792-11004(+)$1	212	180	188	20.0344
::::::ff	chrM:13177-13404(+)$1	227	134	142	13.6551
::::::::	chrM:9720-9938(+)$1	218	8	16	15.7241

#DB
....))))	chrM:8566-8794(+)$1	1	218	226	17.7931
(.((....	chrM:7926-8134(+)$1	1	15	23	20.0344
........	chrM:10756-10983(+)$1	1	216	224	20.0344
........	chrM:7777-7983(+)$1	1	164	172	20.0344
.....(((	chrM:10172-10406(+)$1	1	105	113	16.7586
......((	chrM:8594-8842(+)$1	1	190	198	17.7931
........	chrM:10783-10991(+)$1	1	189	197	20.0344
........	chrM:7793-8004(+)$1	1	148	156	20.0344
.......(	chrM:9490-9751(+)$1	1	24	32	13.1379
........	chrM:7804-8041(+)$1	1	137	145	20.0344
..(((((.	chrM:9029-9279(+)$1	1	4	12	13.1379
.))..)))	chrM:15566-15817(+)$1	1	158	166	15.7241
.(((((((	chr19:4037224-4037474(+)$1	1	6	14	14.5172
(((...((	chrM:6473-6699(+)$1	1	6	14	15.7241
........	chrM:7783-7993(+)$1	1	158	166	20.0344
........	chrM:10148-10372(+)$1	1	129	137	16.7586
..(((...	chrM:9652-9867(+)$1	1	76	84	15.7241
........	chrM:7742-7977(+)$1	1	199	207	20.0344
........	chrM:10804-11048(+)$1	1	168	176	20.0344
.))..)))	chrM:15617-15873(+)$1	1	107	115	15.7241
(.......	chr4:110745473-110745739(+)$1	1	143	151	13.1379
........	chrM:5311-5535(+)$1	1	163	171	20.0344
........	chrM:5335-5594(+)$1	1	139	147	20.0344
.....(((	chrM:10206-10416(+)$1	1	71	79	16.7586
........	chrM:10126-10348(+)$1	1	151	159	16.7586
))....((	chrM:13132-13377(+)$1	1	179	187	13.6551
........	chrM:10792-11004(+)$1	1	180	188	20.0344
......((	chrM:13177-13404(+)$1	1	134	142	13.6551
........	chrM:9720-9938(+)$1	1	8	16	15.7241

#PSSM
A : 0.93	C : 0.06	
C : 0.89	U : 0.06	G : 0.03	
U : 0.82	C : 0.17	
C : 0.96	U : 0.03	
C : 0.96	A : 0.03	
U : 0.96	A : 0.03	
A : 0.72	G : 0.27	
C : 0.93	G : 0.06	

#score	502.8965517241379
#seq	29
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_CDS_m1_run1.nuc.txt

#NT
AAAUUGUA	chr11:28143523-28143798(+)$1	275	53	61	12.1818
AAAGUUUA	chr2:181851949-181852217(+)$1	268	159	167	12.7878
UAAUUUUU	chr7:148514170-148514435(-)$1	265	241	249	13.5454
CUAUUUUA	chr17:25634688-25634946(+)$1	258	31	39	11.9545
UAAUUUUG	chr12:11285968-11286254(-)$1	286	160	168	13.5454
AAAUUUUA	chr3:169888898-169889231(-)$1	333	104	112	16.8030
GAAUUUUU	chr10:69832720-69832985(-)$1	265	79	87	12.1818
CAAUUUUA	chr8:124789440-124789789(+)$1	349	102	110	15.4393
UAAUUUUA	chr13:20593657-20593960(+)$1	303	275	283	17.1818
UAUUUUUA	chr6:160174255-160174600(+)$1	345	40	48	13.0909
UAAUUUAA	chr7:11150829-11151078(+)$1	249	3	11	12.4090
AAAUUUUU	chr10:64952799-64953076(-)$1	277	90	98	13.1666
GGAUUUUA	chr11:85689018-85689346(-)$1	328	85	93	11.8787
GACUUUUA	chr1:215754225-215754485(+)$1	260	72	80	11.8787
UAAUUUUA	chr3:119180592-119180915(-)$1	323	131	139	17.1818
UAAGUUUA	chr17:62510448-62510709(+)$1	261	29	37	13.1666
AAAUUUUA	chr2:166781029-166781307(-)$1	278	4	12	16.8030
GAAUUUUU	chr12:27089297-27089633(-)$1	336	179	187	12.1818
UACUUUUA	chr13:20277186-20277455(-)$1	269	195	203	13.2424
GAAUUUUG	chr13:53261864-53262155(+)$1	291	177	185	12.1818
AAAUUUUC	chr2:97297103-97297386(-)$1	283	29	37	13.0151
AAAUCUUA	chr5:115238576-115238984(+)$1	408	360	368	12.1818
AUAUUUUA	chr2:136407339-136407599(+)$1	260	6	14	13.3181
AAAUUUUA	chr12:62959611-62959920(+)$1	309	24	32	16.8030
GUAUUUUA	chr2:109102760-109103006(+)$1	246	133	141	12.3333
UAAUUUUC	chr3:171851284-171851547(+)$1	263	137	145	13.3939
UAAUUUUA	chr3:179092840-179093117(+)$1	277	18	26	17.1818
UAAUUUUA	chr2:165584596-165584882(-)$1	286	195	203	17.1818
AAAUGUUA	chr8:99718502-99718815(-)$1	313	144	152	12.3333
UACUUUUA	chr12:49666901-49667204(+)$1	303	120	128	13.2424
UAGUUUUA	chr2:15747093-15747442(+)$1	349	22	30	12.9393
ACAUUUUA	chr7:157023912-157024251(+)$1	339	156	164	13.1666
UAAGUUUA	chr17:62518668-62518929(+)$1	261	31	39	13.1666
AAAUUUUA	chr4:95376455-95376733(+)$1	278	95	103	16.8030
UAUUUUUA	chr5:130785620-130786023(-)$1	403	60	68	13.0909
AAACUUUA	chr4:187513768-187514021(-)$1	253	40	48	12.6363
GAAUUUUG	chr12:100955406-100955774(+)$1	368	69	77	12.1818
AAAUUUUG	chr12:69663164-69663392(+)$1	228	108	116	13.1666
UUAUUUUA	chr14:58734041-58734338(-)$1	297	1	9	13.6969
UAAUUUUC	chr10:75984192-75984531(+)$1	339	80	88	13.3939
GAAUUUUG	chr2:228416515-228416780(+)$1	265	21	29	12.1818
UCAUUUUA	chr1:1326841-1327062(-)$1	221	97	105	13.5454
CUAUUUUA	chr16:24803033-24803346(+)$1	313	113	121	11.9545
AAAUUUCA	chr3:183479934-183480207(+)$1	273	155	163	12.0303
UCAUUUUA	chr1:1326801-1327041(-)$1	240	76	84	13.5454
AAAGUUUA	chr9:19379202-19379475(-)$1	273	184	192	12.7878
AAACUUUA	chr13:96251562-96251942(-)$1	380	10	18	12.6363
UAAUUUUA	chr1:89271300-89271570(+)$1	270	204	212	17.1818
GAAUUUUA	chr21:40670111-40670449(-)$1	338	245	253	15.8181
AACUUUUA	chr9:111681066-111681331(-)$1	265	94	102	12.8636
GUAUUUUA	chr1:150318507-150318813(+)$1	306	193	201	12.3333
UACUUUUA	chr22:36334721-36335027(-)$1	306	265	273	13.2424
UAUUUUUA	chr3:42661031-42661257(+)$1	226	79	87	13.0909
ACAUUUUA	chr2:160253480-160253821(-)$1	341	1	9	13.1666
CAAUUUUA	chr15:62160025-62160316(-)$1	291	278	286	15.4393
AAAUGUUA	chr4:113189445-113189774(+)$1	329	156	164	12.3333
UAAUUGUA	chr4:140640574-140640855(+)$1	281	32	40	12.5606
UAAUUUUA	chrX:122757334-122757630(-)$1	296	231	239	17.1818
AAAUGUUA	chr6:91254237-91254529(-)$1	292	66	74	12.3333
UAAUUUUU	chr20:5996005-5996260(+)$1	255	212	220	13.5454
UCAUUUUA	chr8:42914053-42914356(+)$1	303	106	114	13.5454
UAAUUUUA	chr11:14535769-14536078(-)$1	309	41	49	17.1818
AAAGUUUA	chr3:180688753-180689047(+)$1	294	8	16	12.7878
CUAUUUUA	chr17:25634665-25634888(+)$1	223	54	62	11.9545
UAAUUAUA	chr2:159389847-159390115(+)$1	268	92	100	12.4848

#otherMatches

#Struct PSSM
GGGGKKCC	chr12:112525214-112525613(-)$1	399	22	30	12.6363
::::::::	chr11:28143523-28143798(+)$1	275	53	61	12.1818
:eeeee[e	chr2:181851949-181852217(+)$1	268	159	167	12.7878
ooooooee	chr7:148514170-148514435(-)$1	265	241	249	13.5454
ccoooooo	chr17:25634688-25634946(+)$1	258	31	39	11.9545
::::::::	chr12:11285968-11286254(-)$1	286	160	168	13.5454
$eeeeemm	chr3:169888898-169889231(-)$1	333	104	112	16.8030
dmmmmddd	chr10:69832720-69832985(-)$1	265	79	87	12.1818
qdddd22c	chr8:124789440-124789789(+)$1	349	102	110	15.4393
:GGGGGGG	chr13:20593657-20593960(+)$1	303	275	283	17.1818
::::::::	chr6:160174255-160174600(+)$1	345	40	48	13.0909
eellleee	chr7:11150829-11151078(+)$1	249	3	11	12.4090
e[bbpppp	chr10:64952799-64953076(-)$1	277	90	98	13.1666
ppeeeee]	chr11:85689018-85689346(-)$1	328	85	93	11.8787
[ggggggg	chr1:215754225-215754485(+)$1	260	72	80	11.8787
:::::::f	chr3:119180592-119180915(-)$1	323	131	139	17.1818
QQIIIIII	chr17:62510448-62510709(+)$1	261	29	37	13.1666
:::::FFF	chr2:166781029-166781307(-)$1	278	4	12	16.8030
::::::::	chr12:27089297-27089633(-)$1	336	179	187	12.1818
5ffffff5	chr13:20277186-20277455(-)$1	269	195	203	13.2424
{AKKJJJJ	chr13:53261864-53262155(+)$1	291	177	185	12.1818
:::::ccc	chr2:97297103-97297386(-)$1	283	29	37	13.0151
vvvv====	chr5:115238576-115238984(+)$1	408	360	368	12.1818
qqqqqqqq	chr2:136407339-136407599(+)$1	260	6	14	13.3181
EEEEEKKD	chr12:62959611-62959920(+)$1	309	24	32	16.8030
dddd22ee	chr2:109102760-109103006(+)$1	246	133	141	12.3333
33gggggg	chr3:171851284-171851547(+)$1	263	137	145	13.3939
::::::::	chr3:179092840-179093117(+)$1	277	18	26	17.1818
333dddd2	chr2:165584596-165584882(-)$1	286	195	203	17.1818
nnnnneee	chr8:99718502-99718815(-)$1	313	144	152	12.3333
hhhhhhh]	chr12:49666901-49667204(+)$1	303	120	128	13.2424
::::::::	chr2:15747093-15747442(+)$1	349	22	30	12.9393
5555eeee	chr7:157023912-157024251(+)$1	339	156	164	13.1666
odddd22h	chr17:62518668-62518929(+)$1	261	31	39	13.1666
wwwweeee	chr4:95376455-95376733(+)$1	278	95	103	16.8030
ggggggll	chr5:130785620-130786023(-)$1	403	60	68	13.0909
+++++++c	chr4:187513768-187514021(-)$1	253	40	48	12.6363
qqqqqqqq	chr12:100955406-100955774(+)$1	368	69	77	12.1818
YYJJJJJJ	chr12:69663164-69663392(+)$1	228	108	116	13.1666
FFFFF{FF	chr14:58734041-58734338(-)$1	297	1	9	13.6969
oooggggg	chr10:75984192-75984531(+)$1	339	80	88	13.3939
(((((((c	chr2:228416515-228416780(+)$1	265	21	29	12.1818
ddd"""dd	chr1:1326841-1327062(-)$1	221	97	105	13.5454
eqqqqqqq	chr16:24803033-24803346(+)$1	313	113	121	11.9545
dddd!!bb	chr3:183479934-183480207(+)$1	273	155	163	12.0303
ddd"""dd	chr1:1326801-1327041(-)$1	240	76	84	13.5454
zzzfffff	chr9:19379202-19379475(-)$1	273	184	192	12.7878
!!eeeee"	chr13:96251562-96251942(-)$1	380	10	18	12.6363
ffmmmmff	chr1:89271300-89271570(+)$1	270	204	212	17.1818
hhhheeee	chr21:40670111-40670449(-)$1	338	245	253	15.8181
''ffffff	chr9:111681066-111681331(-)$1	265	94	102	12.8636
333dddd2	chr1:150318507-150318813(+)$1	306	193	201	12.3333
gggsssss	chr22:36334721-36335027(-)$1	306	265	273	13.2424
HHHHHHHH	chr3:42661031-42661257(+)$1	226	79	87	13.0909
JJJJJJJJ	chr2:160253480-160253821(-)$1	341	1	9	13.1666
ggggg:::	chr15:62160025-62160316(-)$1	291	278	286	15.4393
LLLEEEEE	chr4:113189445-113189774(+)$1	329	156	164	12.3333
::::::::	chr4:140640574-140640855(+)$1	281	32	40	12.5606
i:::::::	chrX:122757334-122757630(-)$1	296	231	239	17.1818
::eeeeel	chr6:91254237-91254529(-)$1	292	66	74	12.3333
nnnnnfff	chr20:5996005-5996260(+)$1	255	212	220	13.5454
FFF/////	chr8:42914053-42914356(+)$1	303	106	114	13.5454
========	chr11:14535769-14536078(-)$1	309	41	49	17.1818
::::::::	chr3:180688753-180689047(+)$1	294	8	16	12.7878
FFFFFLLL	chr17:25634665-25634888(+)$1	223	54	62	11.9545
mccc333h	chr2:159389847-159390115(+)$1	268	92	100	12.4848

#DB
((((..((	chr12:112525214-112525613(-)$1	1	22	30	12.6363
........	chr11:28143523-28143798(+)$1	1	53	61	12.1818
.(((((.(	chr2:181851949-181852217(+)$1	1	159	167	12.7878
......))	chr7:148514170-148514435(-)$1	1	241	249	13.5454
((......	chr17:25634688-25634946(+)$1	1	31	39	11.9545
........	chr12:11285968-11286254(-)$1	1	160	168	13.5454
.(((((..	chr3:169888898-169889231(-)$1	1	104	112	16.8030
(....)))	chr10:69832720-69832985(-)$1	1	79	87	12.1818
.))))..)	chr8:124789440-124789789(+)$1	1	102	110	15.4393
.)))))))	chr13:20593657-20593960(+)$1	1	275	283	17.1818
........	chr6:160174255-160174600(+)$1	1	40	48	13.0909
((...)))	chr7:11150829-11151078(+)$1	1	3	11	12.4090
(.((....	chr10:64952799-64953076(-)$1	1	90	98	13.1666
..))))).	chr11:85689018-85689346(-)$1	1	85	93	11.8787
.(((((((	chr1:215754225-215754485(+)$1	1	72	80	11.8787
.......(	chr3:119180592-119180915(-)$1	1	131	139	17.1818
..((((((	chr17:62510448-62510709(+)$1	1	29	37	13.1666
.....(((	chr2:166781029-166781307(-)$1	1	4	12	16.8030
........	chr12:27089297-27089633(-)$1	1	179	187	12.1818
.)))))).	chr13:20277186-20277455(-)$1	1	195	203	13.2424
.(..((((	chr13:53261864-53262155(+)$1	1	177	185	12.1818
.....(((	chr2:97297103-97297386(-)$1	1	29	37	13.0151
....))))	chr5:115238576-115238984(+)$1	1	360	368	12.1818
........	chr2:136407339-136407599(+)$1	1	6	14	13.3181
(((((..(	chr12:62959611-62959920(+)$1	1	24	32	16.8030
))))..))	chr2:109102760-109103006(+)$1	1	133	141	12.3333
..))))))	chr3:171851284-171851547(+)$1	1	137	145	13.3939
........	chr3:179092840-179093117(+)$1	1	18	26	17.1818
...)))).	chr2:165584596-165584882(-)$1	1	195	203	17.1818
.....)))	chr8:99718502-99718815(-)$1	1	144	152	12.3333
))))))).	chr12:49666901-49667204(+)$1	1	120	128	13.2424
........	chr2:15747093-15747442(+)$1	1	22	30	12.9393
....))))	chr7:157023912-157024251(+)$1	1	156	164	13.1666
.))))..)	chr17:62518668-62518929(+)$1	1	31	39	13.1666
....))))	chr4:95376455-95376733(+)$1	1	95	103	16.8030
((((((..	chr5:130785620-130786023(-)$1	1	60	68	13.0909
.......(	chr4:187513768-187514021(-)$1	1	40	48	12.6363
........	chr12:100955406-100955774(+)$1	1	69	77	12.1818
..))))))	chr12:69663164-69663392(+)$1	1	108	116	13.1666
(((((.((	chr14:58734041-58734338(-)$1	1	1	9	13.6969
...)))))	chr10:75984192-75984531(+)$1	1	80	88	13.3939
.......(	chr2:228416515-228416780(+)$1	1	21	29	12.1818
(((...((	chr1:1326841-1327062(-)$1	1	97	105	13.5454
(.......	chr16:24803033-24803346(+)$1	1	113	121	11.9545
((((..((	chr3:183479934-183480207(+)$1	1	155	163	12.0303
(((...((	chr1:1326801-1327041(-)$1	1	76	84	13.5454
...)))))	chr9:19379202-19379475(-)$1	1	184	192	12.7878
..(((((.	chr13:96251562-96251942(-)$1	1	10	18	12.6363
((....))	chr1:89271300-89271570(+)$1	1	204	212	17.1818
((((((((	chr21:40670111-40670449(-)$1	1	245	253	15.8181
..((((((	chr9:111681066-111681331(-)$1	1	94	102	12.8636
...)))).	chr1:150318507-150318813(+)$1	1	193	201	12.3333
(((.....	chr22:36334721-36335027(-)$1	1	265	273	13.2424
((((((((	chr3:42661031-42661257(+)$1	1	79	87	13.0909
((((((((	chr2:160253480-160253821(-)$1	1	1	9	13.1666
)))))...	chr15:62160025-62160316(-)$1	1	278	286	15.4393
...(((((	chr4:113189445-113189774(+)$1	1	156	164	12.3333
........	chr4:140640574-140640855(+)$1	1	32	40	12.5606
).......	chrX:122757334-122757630(-)$1	1	231	239	17.1818
..(((((.	chr6:91254237-91254529(-)$1	1	66	74	12.3333
.....)))	chr20:5996005-5996260(+)$1	1	212	220	13.5454
))).....	chr8:42914053-42914356(+)$1	1	106	114	13.5454
))))))))	chr11:14535769-14536078(-)$1	1	41	49	17.1818
........	chr3:180688753-180689047(+)$1	1	8	16	12.7878
(((((...	chr17:25634665-25634888(+)$1	1	54	62	11.9545
.)))...)	chr2:159389847-159390115(+)$1	1	92	100	12.4848

#PSSM
U : 0.42	A : 0.34	G : 0.15	C : 0.07	
A : 0.80	U : 0.10	C : 0.07	G : 0.01	
A : 0.86	C : 0.07	U : 0.04	G : 0.01	
U : 0.87	G : 0.07	C : 0.04	
U : 0.93	G : 0.04	C : 0.01	
U : 0.95	G : 0.03	A : 0.01	
U : 0.96	A : 0.01	C : 0.01	
A : 0.80	U : 0.07	G : 0.07	C : 0.04	

#score	898.3939393939384
#seq	66
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_CDS_m2_run2.nuc.txt

#NT
GCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGGAGAGGGGUCAGGGUUGAU	chrM:14249-14466(-)$1	217	100	196	288.0000
GCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGGAGAGGGGUCAGGGUUGAU	chrM:14241-14447(-)$1	206	81	177	288.0000
GCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGGAGAGGGGUCAGGGUUGAU	chrM:14266-14469(-)$1	203	103	199	288.0000
GCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGGAGAGGGGUCAGGGUUGAU	chrM:14247-14449(-)$1	202	83	179	288.0000
GCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGGAGAGGGGUCAGGGUUGAU	chrM:14222-14432(-)$1	210	66	162	288.0000
GCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGGAGAGGGGUCAGGGUUGAU	chrM:14203-14413(-)$1	210	47	143	288.0000
GCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGGAGAGGGGUCAGGGUUGAU	chrM:14270-14498(-)$1	228	132	228	288.0000
GCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGGAGAGGGGUCAGGGUUGAU	chrM:14213-14418(-)$1	205	52	148	288.0000

#otherMatches

#Struct PSSM
ddd[bb[cccooooooccc22bb]dddd]eeeee]a55555eeeee4444bb22a4444ffffff22ffffff]dddd::::ffffffmmmmffff	chrM:14232-14441(-)$1	209	75	171	288.0000
ddd[bb[cccooooooccc22bb]dddd]eeeee]a55555eeeee4444bb22a4444ffffff22ffffff]dddd4444bb]bb]bb]bb22g	chrM:14249-14466(-)$1	217	100	196	288.0000
ddd[bb[cccooooooccc22bb]dddd]eeeee]a55555eeeee4444bb22a4444ffffff22ffffff]dddd::::ffffffmmmmffff	chrM:14241-14447(-)$1	206	81	177	288.0000
eee[apppppppa]eeeee]a:::CCC}BB}IIIIIIIII::eeeee%%%%%%cccmmmmccc999999999eeeee:::::ffffffmmmmffff	chrM:14266-14469(-)$1	203	103	199	288.0000
ddd[bb[cccooooooccc22bb]dddd]eeeee]a55555eeeee4444bb22a4444ffffff22ffffff]dddd4444bb]bb]bb]bb22g	chrM:14247-14449(-)$1	202	83	179	288.0000
ddd[bb[cccooooooccc22bb]dddd]eeeee]a55555eeeee4444bb22a4444ffffff22ffffff]dddd7777777dddd22ggggg	chrM:14222-14432(-)$1	210	66	162	288.0000
ddd[bb[cccooooooccc22bb]dddd]eeeee]a55555eeeee4444bb22a4444ffffff22ffffff]dddd::::ffffffmmmmffff	chrM:14203-14413(-)$1	210	47	143	288.0000
ddd[bb[cccooooooccc22bb]dddd]eeeee]a55555eeeee4444bb22a4444ffffff22ffffff]dddd4444bb]bb:::::::::	chrM:14270-14498(-)$1	228	132	228	288.0000
ddd[bb[cccooooooccc22bb]dddd]eeeee]a55555eeeee4444bb22a4444ffffff22ffffff]dddd::::ffffffmmmmffff	chrM:14213-14418(-)$1	205	52	148	288.0000

#DB
(((.((.(((......)))..)).)))).))))).).....)))))....))..)....))))))..)))))).))))....((((((....))))	chrM:14232-14441(-)$1	1	75	171	288.0000
(((.((.(((......)))..)).)))).))))).).....)))))....))..)....))))))..)))))).))))....)).)).)).))..)	chrM:14249-14466(-)$1	1	100	196	288.0000
(((.((.(((......)))..)).)))).))))).).....)))))....))..)....))))))..)))))).))))....((((((....))))	chrM:14241-14447(-)$1	1	81	177	288.0000
(((.(.......).))))).)...))).)).)))))))))..(((((......(((....))).........))))).....((((((....))))	chrM:14266-14469(-)$1	1	103	199	288.0000
(((.((.(((......)))..)).)))).))))).).....)))))....))..)....))))))..)))))).))))....)).)).)).))..)	chrM:14247-14449(-)$1	1	83	179	288.0000
(((.((.(((......)))..)).)))).))))).).....)))))....))..)....))))))..)))))).)))).......))))..)))))	chrM:14222-14432(-)$1	1	66	162	288.0000
(((.((.(((......)))..)).)))).))))).).....)))))....))..)....))))))..)))))).))))....((((((....))))	chrM:14203-14413(-)$1	1	47	143	288.0000
(((.((.(((......)))..)).)))).))))).).....)))))....))..)....))))))..)))))).))))....)).)).........	chrM:14270-14498(-)$1	1	132	228	288.0000
(((.((.(((......)))..)).)))).))))).).....)))))....))..)....))))))..)))))).))))....((((((....))))	chrM:14213-14418(-)$1	1	52	148	288.0000

#PSSM
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	

#score	2592.0000000000005
#seq	9
#width	96
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_CDS_m2_run1.nuc.txt

#NT
CAG	chr2:73466670-73466877(+)$1	207	46	49	8.9999
CAG	chr13:47361055-47361259(-)$1	204	65	68	8.9999
CAG	chr13:48832161-48832374(+)$1	213	41	44	8.9999
CAG	chr22:38206030-38206256(+)$1	226	0	3	8.9999
CAG	chr1:17313600-17313842(-)$1	242	16	19	8.9999
CAG	chrX:153764275-153764493(-)$1	218	18	21	8.9999
CAG	chr5:95091162-95091408(+)$1	246	8	11	8.9999
CAG	chr16:767162-767459(+)$1	297	12	15	8.9999
CAG	chr14:103988632-103988851(-)$1	219	6	9	8.9999
CAG	chr15:66791883-66792090(-)$1	207	58	61	8.9999
CAG	chr17:48470060-48470284(-)$1	224	83	86	8.9999
CAG	chr1:31426500-31426721(-)$1	221	53	56	8.9999
CAG	chr9:125920510-125920734(-)$1	224	65	68	8.9999
CAG	chr8:144696859-144697109(-)$1	250	21	24	8.9999
CAG	chr15:85326548-85326804(+)$1	256	0	3	8.9999
CAG	chr6:26199928-26200136(+)$1	208	133	136	8.9999
CAG	chr16:81129714-81129923(-)$1	209	133	136	8.9999
CAG	chr16:167199-167410(-)$1	211	33	36	8.9999
CAG	chr1:206619438-206619713(+)$1	275	56	59	8.9999
CAG	chr15:52161312-52161550(+)$1	238	7	10	8.9999
CAG	chr20:57484925-57485128(+)$1	203	21	24	8.9999
CAG	chr10:79795224-79795434(+)$1	210	75	78	8.9999
CAG	chrX:153061871-153062091(+)$1	220	14	17	8.9999
CAG	chr2:242195688-242195908(-)$1	220	44	47	8.9999
CAG	chr19:18672821-18673029(+)$1	208	21	24	8.9999
CAG	chr5:71591310-71591513(-)$1	203	137	140	8.9999
CAG	chr2:70503767-70504056(+)$1	289	152	155	8.9999
CAG	chr1:149858043-149858247(-)$1	204	123	126	8.9999
CAG	chr15:90991704-90991996(+)$1	292	97	100	8.9999
CAG	chr6:31636298-31636519(+)$1	221	14	17	8.9999
CAG	chr21:38537750-38538012(+)$1	262	6	9	8.9999
CAG	chr14:93685477-93685794(+)$1	317	77	80	8.9999
CAG	chr8:95521992-95522246(-)$1	254	75	78	8.9999
CAG	chr8:56985553-56985767(-)$1	214	34	37	8.9999
CAG	chr17:80053099-80053309(-)$1	210	44	47	8.9999
CAG	chr19:10935748-10935987(+)$1	239	5	8	8.9999
CAG	chr12:56525432-56525637(+)$1	205	97	100	8.9999
CAG	chr1:193094173-193094419(+)$1	246	9	12	8.9999
CAG	chr15:65555473-65555723(-)$1	250	62	65	8.9999
CAG	chr3:40500074-40500304(+)$1	230	94	97	8.9999
CAG	chr17:76182953-76183158(-)$1	205	21	24	8.9999
CAG	chr12:110902809-110903090(-)$1	281	6	9	8.9999
CAG	chr1:234744308-234744522(-)$1	214	10	13	8.9999
CAG	chr5:54624460-54624725(+)$1	265	40	43	8.9999
CAG	chr15:102190122-102190384(-)$1	262	17	20	8.9999
CAG	chr7:23339075-23339326(+)$1	251	13	16	8.9999
CAG	chr1:151397370-151397616(-)$1	246	20	23	8.9999
CAG	chr11:10823156-10823387(-)$1	231	75	78	8.9999
CAG	chr9:110045836-110046060(+)$1	224	5	8	8.9999
CAG	chr14:75139430-75139681(-)$1	251	23	26	8.9999
CAG	chr1:45407206-45407432(-)$1	226	92	95	8.9999
CAG	chrX:118145719-118145971(+)$1	252	55	58	8.9999
CAG	chr1:19746085-19746327(-)$1	242	80	83	8.9999
CAG	chr17:80011109-80011336(+)$1	227	4	7	8.9999
CAG	chr5:180001063-180001296(+)$1	233	19	22	8.9999
CAG	chr2:26417380-26417592(-)$1	212	32	35	8.9999
CAG	chr9:35707085-35707318(-)$1	233	5	8	8.9999
CAG	chr19:39214179-39214386(+)$1	207	71	74	8.9999
CAG	chr5:917062-917284(+)$1	222	2	5	8.9999
CAG	chr12:58111560-58111794(+)$1	234	56	59	8.9999
CAG	chr1:35919057-35919285(-)$1	228	12	15	8.9999
CAG	chr9:131744868-131745080(+)$1	212	53	56	8.9999
CAG	chr11:57100176-57100394(-)$1	218	4	7	8.9999
CAG	chr13:30109854-30110075(-)$1	221	36	39	8.9999
CAG	chr11:72468801-72469032(-)$1	231	100	103	8.9999
CAG	chr10:17277222-17277431(+)$1	209	32	35	8.9999
CAG	chr2:242194385-242194616(-)$1	231	115	118	8.9999
CAG	chr2:47643342-47643575(+)$1	233	119	122	8.9999
CAG	chr19:47342725-47342935(-)$1	210	81	84	8.9999
CAG	chr17:18160155-18160417(-)$1	262	46	49	8.9999
CAG	chr7:44250521-44250789(+)$1	268	6	9	8.9999
CAG	chr3:179134228-179134444(-)$1	216	109	112	8.9999
CAG	chr12:120660369-120660594(-)$1	225	15	18	8.9999
CAG	chr12:112572447-112572764(+)$1	317	5	8	8.9999
CAG	chr1:54675522-54675747(+)$1	225	64	67	8.9999
CAG	chr15:40293093-40293354(+)$1	261	71	74	8.9999
CAG	chr11:67165948-67166183(-)$1	235	31	34	8.9999
CAG	chr10:79781254-79781479(-)$1	225	60	63	8.9999
CAG	chr11:9431450-9431657(+)$1	207	21	24	8.9999
CAG	chr16:50357449-50357710(-)$1	261	29	32	8.9999
CAG	chr7:105738209-105738443(-)$1	234	119	122	8.9999
CAG	chr22:21084090-21084339(-)$1	249	37	40	8.9999
CAG	chr16:30080544-30080749(+)$1	205	8	11	8.9999
CAG	chr1:40529884-40530142(+)$1	258	45	48	8.9999
CAG	chr15:75182842-75183095(+)$1	253	123	126	8.9999
CAG	chr18:18625152-18625404(-)$1	252	100	103	8.9999
CAG	chr6:27114434-27114660(-)$1	226	60	63	8.9999
CAG	chr6:26199885-26200091(+)$1	206	42	45	8.9999
CAG	chr14:23420720-23420951(-)$1	231	50	53	8.9999
CAG	chr20:20006217-20006489(+)$1	272	8	11	8.9999
CAG	chr19:8038617-8038839(-)$1	222	4	7	8.9999
CAG	chr11:62296304-62296573(-)$1	269	35	38	8.9999
CAG	chr11:47800502-47800769(-)$1	267	29	32	8.9999
CAG	chr5:71490609-71490857(+)$1	248	2	5	8.9999
CAG	chr6:116421975-116422229(+)$1	254	5	8	8.9999
CAG	chr1:115275181-115275402(-)$1	221	92	95	8.9999

#otherMatches

#Struct PSSM
fff	chr21:44479272-44479513(-)$1	241	6	9	8.9999
GGG	chr2:73466670-73466877(+)$1	207	46	49	8.9999
ddd	chr13:47361055-47361259(-)$1	204	65	68	8.9999
:ff	chr13:48832161-48832374(+)$1	213	41	44	8.9999
:cc	chr22:38206030-38206256(+)$1	226	0	3	8.9999
ddd	chr1:17313600-17313842(-)$1	242	16	19	8.9999
bbf	chrX:153764275-153764493(-)$1	218	18	21	8.9999
fff	chr5:95091162-95091408(+)$1	246	8	11	8.9999
lle	chr16:767162-767459(+)$1	297	12	15	8.9999
::E	chr14:103988632-103988851(-)$1	219	6	9	8.9999
mm=	chr15:66791883-66792090(-)$1	207	58	61	8.9999
CCC	chr17:48470060-48470284(-)$1	224	83	86	8.9999
dd]	chr1:31426500-31426721(-)$1	221	53	56	8.9999
ddd	chr9:125920510-125920734(-)$1	224	65	68	8.9999
eee	chr8:144696859-144697109(-)$1	250	21	24	8.9999
:FF	chr15:85326548-85326804(+)$1	256	0	3	8.9999
]ff	chr6:26199928-26200136(+)$1	208	133	136	8.9999
ddB	chr16:81129714-81129923(-)$1	209	133	136	8.9999
::e	chr16:167199-167410(-)$1	211	33	36	8.9999
sss	chr1:206619438-206619713(+)$1	275	56	59	8.9999
LEE	chr15:52161312-52161550(+)$1	238	7	10	8.9999
:cc	chr20:57484925-57485128(+)$1	203	21	24	8.9999
eee	chr10:79795224-79795434(+)$1	210	75	78	8.9999
f[c	chrX:153061871-153062091(+)$1	220	14	17	8.9999
B{B	chr2:242195688-242195908(-)$1	220	44	47	8.9999
fff	chr19:18672821-18673029(+)$1	208	21	24	8.9999
iii	chr5:71591310-71591513(-)$1	203	137	140	8.9999
eee	chr2:70503767-70504056(+)$1	289	152	155	8.9999
^^^	chr1:149858043-149858247(-)$1	204	123	126	8.9999
EEE	chr15:90991704-90991996(+)$1	292	97	100	8.9999
fff	chr6:31636298-31636519(+)$1	221	14	17	8.9999
ooo	chr21:38537750-38538012(+)$1	262	6	9	8.9999
!!b	chr14:93685477-93685794(+)$1	317	77	80	8.9999
b]c	chr8:95521992-95522246(-)$1	254	75	78	8.9999
fff	chr8:56985553-56985767(-)$1	214	34	37	8.9999
eee	chr17:80053099-80053309(-)$1	210	44	47	8.9999
D:f	chr19:10935748-10935987(+)$1	239	5	8	8.9999
ccc	chr12:56525432-56525637(+)$1	205	97	100	8.9999
eee	chr1:193094173-193094419(+)$1	246	9	12	8.9999
lld	chr15:65555473-65555723(-)$1	250	62	65	8.9999
ccc	chr3:40500074-40500304(+)$1	230	94	97	8.9999
C:a	chr17:76182953-76183158(-)$1	205	21	24	8.9999
FFF	chr12:110902809-110903090(-)$1	281	6	9	8.9999
CCg	chr1:234744308-234744522(-)$1	214	10	13	8.9999
[ee	chr5:54624460-54624725(+)$1	265	40	43	8.9999
ee!	chr15:102190122-102190384(-)$1	262	17	20	8.9999
ggg	chr7:23339075-23339326(+)$1	251	13	16	8.9999
===	chr1:151397370-151397616(-)$1	246	20	23	8.9999
nff	chr11:10823156-10823387(-)$1	231	75	78	8.9999
DKK	chr9:110045836-110046060(+)$1	224	5	8	8.9999
KA{	chr14:75139430-75139681(-)$1	251	23	26	8.9999
cco	chr1:45407206-45407432(-)$1	226	92	95	8.9999
FFF	chrX:118145719-118145971(+)$1	252	55	58	8.9999
ccc	chr1:19746085-19746327(-)$1	242	80	83	8.9999
EEE	chr17:80011109-80011336(+)$1	227	4	7	8.9999
III	chr5:180001063-180001296(+)$1	233	19	22	8.9999
EEE	chr2:26417380-26417592(-)$1	212	32	35	8.9999
uuu	chr9:35707085-35707318(-)$1	233	5	8	8.9999
ddd	chr19:39214179-39214386(+)$1	207	71	74	8.9999
FFF	chr5:917062-917284(+)$1	222	2	5	8.9999
cpp	chr12:58111560-58111794(+)$1	234	56	59	8.9999
ddd	chr1:35919057-35919285(-)$1	228	12	15	8.9999
cee	chr9:131744868-131745080(+)$1	212	53	56	8.9999
ee[	chr11:57100176-57100394(-)$1	218	4	7	8.9999
hhh	chr13:30109854-30110075(-)$1	221	36	39	8.9999
qqc	chr11:72468801-72469032(-)$1	231	100	103	8.9999
DDD	chr10:17277222-17277431(+)$1	209	32	35	8.9999
]ee	chr2:242194385-242194616(-)$1	231	115	118	8.9999
bbd	chr2:47643342-47643575(+)$1	233	119	122	8.9999
eee	chr19:47342725-47342935(-)$1	210	81	84	8.9999
ee[	chr17:18160155-18160417(-)$1	262	46	49	8.9999
GGG	chr7:44250521-44250789(+)$1	268	6	9	8.9999
:::	chr3:179134228-179134444(-)$1	216	109	112	8.9999
mgg	chr12:120660369-120660594(-)$1	225	15	18	8.9999
HHH	chr12:112572447-112572764(+)$1	317	5	8	8.9999
!ee	chr1:54675522-54675747(+)$1	225	64	67	8.9999
ccl	chr15:40293093-40293354(+)$1	261	71	74	8.9999
ffo	chr11:67165948-67166183(-)$1	235	31	34	8.9999
===	chr10:79781254-79781479(-)$1	225	60	63	8.9999
NDD	chr11:9431450-9431657(+)$1	207	21	24	8.9999
MMC	chr16:50357449-50357710(-)$1	261	29	32	8.9999
}CC	chr7:105738209-105738443(-)$1	234	119	122	8.9999
xxx	chr22:21084090-21084339(-)$1	249	37	40	8.9999
BA{	chr16:30080544-30080749(+)$1	205	8	11	8.9999
::c	chr1:40529884-40530142(+)$1	258	45	48	8.9999
bb!	chr15:75182842-75183095(+)$1	253	123	126	8.9999
ddc	chr18:18625152-18625404(-)$1	252	100	103	8.9999
""d	chr6:27114434-27114660(-)$1	226	60	63	8.9999
a22	chr6:26199885-26200091(+)$1	206	42	45	8.9999
eeo	chr14:23420720-23420951(-)$1	231	50	53	8.9999
DDD	chr20:20006217-20006489(+)$1	272	8	11	8.9999
[ff	chr19:8038617-8038839(-)$1	222	4	7	8.9999
ccm	chr11:62296304-62296573(-)$1	269	35	38	8.9999
EEE	chr11:47800502-47800769(-)$1	267	29	32	8.9999
::B	chr5:71490609-71490857(+)$1	248	2	5	8.9999
KKB	chr6:116421975-116422229(+)$1	254	5	8	8.9999
tee	chr1:115275181-115275402(-)$1	221	92	95	8.9999

#DB
(((	chr21:44479272-44479513(-)$1	1	6	9	8.9999
(((	chr2:73466670-73466877(+)$1	1	46	49	8.9999
(((	chr13:47361055-47361259(-)$1	1	65	68	8.9999
.((	chr13:48832161-48832374(+)$1	1	41	44	8.9999
.((	chr22:38206030-38206256(+)$1	1	0	3	8.9999
)))	chr1:17313600-17313842(-)$1	1	16	19	8.9999
)))	chrX:153764275-153764493(-)$1	1	18	21	8.9999
(((	chr5:95091162-95091408(+)$1	1	8	11	8.9999
..)	chr16:767162-767459(+)$1	1	12	15	8.9999
..(	chr14:103988632-103988851(-)$1	1	6	9	8.9999
..)	chr15:66791883-66792090(-)$1	1	58	61	8.9999
(((	chr17:48470060-48470284(-)$1	1	83	86	8.9999
)).	chr1:31426500-31426721(-)$1	1	53	56	8.9999
(((	chr9:125920510-125920734(-)$1	1	65	68	8.9999
(((	chr8:144696859-144697109(-)$1	1	21	24	8.9999
.((	chr15:85326548-85326804(+)$1	1	0	3	8.9999
.))	chr6:26199928-26200136(+)$1	1	133	136	8.9999
)))	chr16:81129714-81129923(-)$1	1	133	136	8.9999
..(	chr16:167199-167410(-)$1	1	33	36	8.9999
...	chr1:206619438-206619713(+)$1	1	56	59	8.9999
.((	chr15:52161312-52161550(+)$1	1	7	10	8.9999
.((	chr20:57484925-57485128(+)$1	1	21	24	8.9999
)))	chr10:79795224-79795434(+)$1	1	75	78	8.9999
(.(	chrX:153061871-153062091(+)$1	1	14	17	8.9999
(.(	chr2:242195688-242195908(-)$1	1	44	47	8.9999
)))	chr19:18672821-18673029(+)$1	1	21	24	8.9999
(((	chr5:71591310-71591513(-)$1	1	137	140	8.9999
)))	chr2:70503767-70504056(+)$1	1	152	155	8.9999
...	chr1:149858043-149858247(-)$1	1	123	126	8.9999
(((	chr15:90991704-90991996(+)$1	1	97	100	8.9999
(((	chr6:31636298-31636519(+)$1	1	14	17	8.9999
...	chr21:38537750-38538012(+)$1	1	6	9	8.9999
..(	chr14:93685477-93685794(+)$1	1	77	80	8.9999
).)	chr8:95521992-95522246(-)$1	1	75	78	8.9999
(((	chr8:56985553-56985767(-)$1	1	34	37	8.9999
(((	chr17:80053099-80053309(-)$1	1	44	47	8.9999
(.(	chr19:10935748-10935987(+)$1	1	5	8	8.9999
)))	chr12:56525432-56525637(+)$1	1	97	100	8.9999
(((	chr1:193094173-193094419(+)$1	1	9	12	8.9999
..)	chr15:65555473-65555723(-)$1	1	62	65	8.9999
(((	chr3:40500074-40500304(+)$1	1	94	97	8.9999
(.(	chr17:76182953-76183158(-)$1	1	21	24	8.9999
(((	chr12:110902809-110903090(-)$1	1	6	9	8.9999
(((	chr1:234744308-234744522(-)$1	1	10	13	8.9999
.((	chr5:54624460-54624725(+)$1	1	40	43	8.9999
((.	chr15:102190122-102190384(-)$1	1	17	20	8.9999
)))	chr7:23339075-23339326(+)$1	1	13	16	8.9999
)))	chr1:151397370-151397616(-)$1	1	20	23	8.9999
.))	chr11:10823156-10823387(-)$1	1	75	78	8.9999
(..	chr9:110045836-110046060(+)$1	1	5	8	8.9999
.(.	chr14:75139430-75139681(-)$1	1	23	26	8.9999
((.	chr1:45407206-45407432(-)$1	1	92	95	8.9999
(((	chrX:118145719-118145971(+)$1	1	55	58	8.9999
(((	chr1:19746085-19746327(-)$1	1	80	83	8.9999
(((	chr17:80011109-80011336(+)$1	1	4	7	8.9999
(((	chr5:180001063-180001296(+)$1	1	19	22	8.9999
(((	chr2:26417380-26417592(-)$1	1	32	35	8.9999
...	chr9:35707085-35707318(-)$1	1	5	8	8.9999
)))	chr19:39214179-39214386(+)$1	1	71	74	8.9999
(((	chr5:917062-917284(+)$1	1	2	5	8.9999
(..	chr12:58111560-58111794(+)$1	1	56	59	8.9999
(((	chr1:35919057-35919285(-)$1	1	12	15	8.9999
)((	chr9:131744868-131745080(+)$1	1	53	56	8.9999
((.	chr11:57100176-57100394(-)$1	1	4	7	8.9999
(((	chr13:30109854-30110075(-)$1	1	36	39	8.9999
..)	chr11:72468801-72469032(-)$1	1	100	103	8.9999
(((	chr10:17277222-17277431(+)$1	1	32	35	8.9999
.))	chr2:242194385-242194616(-)$1	1	115	118	8.9999
(((	chr2:47643342-47643575(+)$1	1	119	122	8.9999
(((	chr19:47342725-47342935(-)$1	1	81	84	8.9999
((.	chr17:18160155-18160417(-)$1	1	46	49	8.9999
(((	chr7:44250521-44250789(+)$1	1	6	9	8.9999
...	chr3:179134228-179134444(-)$1	1	109	112	8.9999
.))	chr12:120660369-120660594(-)$1	1	15	18	8.9999
(((	chr12:112572447-112572764(+)$1	1	5	8	8.9999
.((	chr1:54675522-54675747(+)$1	1	64	67	8.9999
((.	chr15:40293093-40293354(+)$1	1	71	74	8.9999
((.	chr11:67165948-67166183(-)$1	1	31	34	8.9999
(((	chr10:79781254-79781479(-)$1	1	60	63	8.9999
.((	chr11:9431450-9431657(+)$1	1	21	24	8.9999
..(	chr16:50357449-50357710(-)$1	1	29	32	8.9999
.))	chr7:105738209-105738443(-)$1	1	119	122	8.9999
...	chr22:21084090-21084339(-)$1	1	37	40	8.9999
((.	chr16:30080544-30080749(+)$1	1	8	11	8.9999
..(	chr1:40529884-40530142(+)$1	1	45	48	8.9999
((.	chr15:75182842-75183095(+)$1	1	123	126	8.9999
(((	chr18:18625152-18625404(-)$1	1	100	103	8.9999
..(	chr6:27114434-27114660(-)$1	1	60	63	8.9999
)..	chr6:26199885-26200091(+)$1	1	42	45	8.9999
((.	chr14:23420720-23420951(-)$1	1	50	53	8.9999
(((	chr20:20006217-20006489(+)$1	1	8	11	8.9999
.((	chr19:8038617-8038839(-)$1	1	4	7	8.9999
((.	chr11:62296304-62296573(-)$1	1	35	38	8.9999
(((	chr11:47800502-47800769(-)$1	1	29	32	8.9999
..(	chr5:71490609-71490857(+)$1	1	2	5	8.9999
..(	chr6:116421975-116422229(+)$1	1	5	8	8.9999
.))	chr1:115275181-115275402(-)$1	1	92	95	8.9999

#PSSM
C : 0.99	
A : 0.99	
G : 0.99	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_transcript_m1_run2.nuc.txt

#NT
GCCCU	chr21:46888567-46888800(+)$1	233	4	9	15.0000
GCCCU	chr4:184129064-184129374(+)$1	310	127	132	15.0000
GCCCU	chr2:216242824-216243063(-)$1	239	62	67	15.0000
GCCCU	chr7:75615593-75615847(+)$1	254	9	14	15.0000
GCCCU	chr20:61460706-61460912(+)$1	206	72	77	15.0000
GCCCU	chr6:144747325-144747673(+)$1	348	186	191	15.0000
GCCCU	chr20:17608164-17608395(-)$1	231	202	207	15.0000
GCCCU	chr9:117027600-117027849(+)$1	249	161	166	15.0000
GCCCU	chr20:60886569-60886798(-)$1	229	195	200	15.0000
GCCCU	chr19:6714262-6714468(-)$1	206	73	78	15.0000
GCCCU	chr2:21245610-21245813(-)$1	203	40	45	15.0000
GCCCU	chr19:6712299-6712516(-)$1	217	53	58	15.0000
GCCCU	chr19:6686112-6686350(-)$1	238	111	116	15.0000
GCCCU	chr16:30079865-30080122(+)$1	257	177	182	15.0000
GCCCU	chr21:46917414-46917633(+)$1	219	107	112	15.0000
GCCCU	chr20:60887683-60887915(-)$1	232	52	57	15.0000
GCCCU	chr14:101200385-101200625(+)$1	240	23	28	15.0000
GCCCU	chr6:132271361-132271634(-)$1	273	95	100	15.0000
GCCCU	chr3:133486783-133487016(+)$1	233	14	19	15.0000
GCCCU	chr7:100771576-100771862(+)$1	286	76	81	15.0000
GCCCU	chr2:216239840-216240114(-)$1	274	148	153	15.0000
GCCCU	chr21:46916313-46916559(+)$1	246	87	92	15.0000
GCCCU	chr11:68192529-68192774(+)$1	245	92	97	15.0000
GCCCU	chr20:60942114-60942376(-)$1	262	215	220	15.0000
GCCCU	chr2:216296569-216296781(-)$1	212	59	64	15.0000
GCCCU	chr2:216285349-216285595(-)$1	246	207	212	15.0000
GCCCU	chr16:30080036-30080308(+)$1	272	6	11	15.0000
GCCCU	chr2:216296534-216296756(-)$1	222	34	39	15.0000
GCCCU	chr21:47630512-47630760(-)$1	248	14	19	15.0000
GCCCU	chr1:977235-977517(+)$1	282	113	118	15.0000
GCCCU	chr6:132271461-132271709(-)$1	248	170	175	15.0000
GCCCU	chr17:64224145-64224354(-)$1	209	28	33	15.0000
GCCCU	chr16:30081337-30081550(+)$1	213	7	12	15.0000
GCCCU	chr4:1808198-1808446(+)$1	248	228	233	15.0000
GCCCU	chr1:17952349-17952602(+)$1	253	53	58	15.0000
GCCCU	chr12:862122-862386(+)$1	264	166	171	15.0000
GCCCU	chr14:24606807-24607056(+)$1	249	203	208	15.0000
GCCCU	chr9:116997779-116997991(+)$1	212	194	199	15.0000
GCCCU	chr19:6718313-6718521(-)$1	208	81	86	15.0000
GCCCU	chr11:121420623-121420900(+)$1	277	140	145	15.0000

#otherMatches

#Struct PSSM
DDDdd	chr19:34870322-34870610(+)$1	288	127	132	15.0000
::EEE	chr21:46888567-46888800(+)$1	233	4	9	15.0000
cc!!c	chr4:184129064-184129374(+)$1	310	127	132	15.0000
bb:FF	chr2:216242824-216243063(-)$1	239	62	67	15.0000
DDDHH	chr7:75615593-75615847(+)$1	254	9	14	15.0000
eeea!	chr20:61460706-61460912(+)$1	206	72	77	15.0000
ccooo	chr6:144747325-144747673(+)$1	348	186	191	15.0000
eeee[	chr20:17608164-17608395(-)$1	231	202	207	15.0000
:hhhh	chr9:117027600-117027849(+)$1	249	161	166	15.0000
bbeee	chr20:60886569-60886798(-)$1	229	195	200	15.0000
gg22c	chr19:6714262-6714468(-)$1	206	73	78	15.0000
ccc::	chr2:21245610-21245813(-)$1	203	40	45	15.0000
FFFFF	chr19:6712299-6712516(-)$1	217	53	58	15.0000
(((bb	chr19:6686112-6686350(-)$1	238	111	116	15.0000
hhhee	chr16:30079865-30080122(+)$1	257	177	182	15.0000
dddd2	chr21:46917414-46917633(+)$1	219	107	112	15.0000
]eeee	chr20:60887683-60887915(-)$1	232	52	57	15.0000
d]eee	chr14:101200385-101200625(+)$1	240	23	28	15.0000
cHHHH	chr6:132271361-132271634(-)$1	273	95	100	15.0000
DDD{B	chr3:133486783-133487016(+)$1	233	14	19	15.0000
=''''	chr7:100771576-100771862(+)$1	286	76	81	15.0000
ccccc	chr2:216239840-216240114(-)$1	274	148	153	15.0000
BB::d	chr21:46916313-46916559(+)$1	246	87	92	15.0000
dddd:	chr11:68192529-68192774(+)$1	245	92	97	15.0000
eebb:	chr20:60942114-60942376(-)$1	262	215	220	15.0000
====F	chr2:216296569-216296781(-)$1	212	59	64	15.0000
BB:==	chr2:216285349-216285595(-)$1	246	207	212	15.0000
DDDD:	chr16:30080036-30080308(+)$1	272	6	11	15.0000
DDDDF	chr2:216296534-216296756(-)$1	222	34	39	15.0000
{HHHH	chr21:47630512-47630760(-)$1	248	14	19	15.0000
EE:::	chr1:977235-977517(+)$1	282	113	118	15.0000
FFFFY	chr6:132271461-132271709(-)$1	248	170	175	15.0000
bb[bb	chr17:64224145-64224354(-)$1	209	28	33	15.0000
DDCCC	chr16:30081337-30081550(+)$1	213	7	12	15.0000
CCGGG	chr4:1808198-1808446(+)$1	248	228	233	15.0000
hhhhh	chr1:17952349-17952602(+)$1	253	53	58	15.0000
iibb[	chr12:862122-862386(+)$1	264	166	171	15.0000
qqqqq	chr14:24606807-24607056(+)$1	249	203	208	15.0000
DDDDD	chr9:116997779-116997991(+)$1	212	194	199	15.0000
ddddh	chr19:6718313-6718521(-)$1	208	81	86	15.0000
CCChh	chr11:121420623-121420900(+)$1	277	140	145	15.0000

#DB
(((((	chr19:34870322-34870610(+)$1	1	127	132	15.0000
..(((	chr21:46888567-46888800(+)$1	1	4	9	15.0000
((..(	chr4:184129064-184129374(+)$1	1	127	132	15.0000
)).((	chr2:216242824-216243063(-)$1	1	62	67	15.0000
(((((	chr7:75615593-75615847(+)$1	1	9	14	15.0000
((((.	chr20:61460706-61460912(+)$1	1	72	77	15.0000
((...	chr6:144747325-144747673(+)$1	1	186	191	15.0000
((((.	chr20:17608164-17608395(-)$1	1	202	207	15.0000
.((((	chr9:117027600-117027849(+)$1	1	161	166	15.0000
)))))	chr20:60886569-60886798(-)$1	1	195	200	15.0000
))..)	chr19:6714262-6714468(-)$1	1	73	78	15.0000
)))..	chr2:21245610-21245813(-)$1	1	40	45	15.0000
(((((	chr19:6712299-6712516(-)$1	1	53	58	15.0000
...((	chr19:6686112-6686350(-)$1	1	111	116	15.0000
)))))	chr16:30079865-30080122(+)$1	1	177	182	15.0000
)))).	chr21:46917414-46917633(+)$1	1	107	112	15.0000
.))))	chr20:60887683-60887915(-)$1	1	52	57	15.0000
).)))	chr14:101200385-101200625(+)$1	1	23	28	15.0000
)((((	chr6:132271361-132271634(-)$1	1	95	100	15.0000
(((.(	chr3:133486783-133487016(+)$1	1	14	19	15.0000
(....	chr7:100771576-100771862(+)$1	1	76	81	15.0000
(((((	chr2:216239840-216240114(-)$1	1	148	153	15.0000
))..(	chr21:46916313-46916559(+)$1	1	87	92	15.0000
)))).	chr11:68192529-68192774(+)$1	1	92	97	15.0000
)))).	chr20:60942114-60942376(-)$1	1	215	220	15.0000
))))(	chr2:216296569-216296781(-)$1	1	59	64	15.0000
)).((	chr2:216285349-216285595(-)$1	1	207	212	15.0000
((((.	chr16:30080036-30080308(+)$1	1	6	11	15.0000
(((((	chr2:216296534-216296756(-)$1	1	34	39	15.0000
.((((	chr21:47630512-47630760(-)$1	1	14	19	15.0000
))...	chr1:977235-977517(+)$1	1	113	118	15.0000
)))).	chr6:132271461-132271709(-)$1	1	170	175	15.0000
((.((	chr17:64224145-64224354(-)$1	1	28	33	15.0000
(((((	chr16:30081337-30081550(+)$1	1	7	12	15.0000
)))))	chr4:1808198-1808446(+)$1	1	228	233	15.0000
(((((	chr1:17952349-17952602(+)$1	1	53	58	15.0000
((((.	chr12:862122-862386(+)$1	1	166	171	15.0000
.....	chr14:24606807-24607056(+)$1	1	203	208	15.0000
)))))	chr9:116997779-116997991(+)$1	1	194	199	15.0000
)))))	chr19:6718313-6718521(-)$1	1	81	86	15.0000
(((((	chr11:121420623-121420900(+)$1	1	140	145	15.0000

#PSSM
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	

#score	615.0000000000001
#seq	41
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_transcript_m1_run2.nuc.txt

#NT
ugaggaggg	chr4:87891956-87892264(+)$1	308	95	104	17.1190
UGGGGAGCG	chr16:89360358-89360623(-)$1	265	87	96	16.6428
uagggaggg	chr6:159040458-159040763(+)$1	305	120	129	16.5238
uggggcggg	chr22:19389344-19389638(-)$1	294	135	144	18.0714
UGGGGAGGG	chr2:236431035-236431327(+)$1	292	131	140	21.1666
ugaggaugg	chr4:107008372-107008681(-)$1	309	59	68	13.7857
uggggaugu	chr1:212932919-212933215(-)$1	296	153	162	14.6190
UGAGGAGGU	chr19:34882458-34882765(+)$1	307	134	143	13.9047
UGGGGUGGG	chrX:73338766-73339063(-)$1	297	131	140	18.1904
UGGGGCUGG	chr16:1361765-1362030(+)$1	265	98	107	14.7380
UGGGGUGGG	chr17:76821450-76821820(-)$1	370	158	167	18.1904
UGGGGAGGC	chr19:8545994-8546470(+)$1	476	355	364	17.4761
UGGGGAAGG	chr6:89791452-89791724(+)$1	272	124	133	17.3571
UGGGGCUGG	chr16:89511796-89512070(-)$1	274	162	171	14.7380
cggggaggg	chr21:45099025-45099291(+)$1	266	129	138	17.1190
UCGGGAGGG	chr2:61764264-61764566(-)$1	302	78	87	16.5238
aggggaggg	chr19:57346307-57346563(-)$1	256	11	20	17.1190
UGGGGCGGG	chr19:57350724-57351014(-)$1	290	36	45	18.0714
GGGGGAGGG	chr20:57467342-57467612(+)$1	270	237	246	17.1190
UGGGAAGGG	chr19:8517362-8517714(+)$1	352	175	184	17.0000
AGGGGUGGG	chr14:39736267-39736545(+)$1	278	103	112	14.1428
GGGGGAGGG	chrY:15017053-15017448(+)$1	395	165	174	17.1190
UGGGGAGGC	chr3:187462660-187462948(-)$1	288	66	75	17.4761
uggguuggg	chr20:13791642-13791950(+)$1	308	56	65	14.1428
CGGGGAGGG	chr2:118846106-118846360(+)$1	254	229	238	17.1190
UGGGGAGCG	chr12:133402597-133402857(-)$1	260	61	70	16.6428
ugggcaggg	chr1:212933433-212933675(-)$1	242	84	93	17.2380
uggugaggg	chr5:14404075-14404377(+)$1	302	10	19	16.4047
UGGGGAGGG	chr2:239356625-239356976(+)$1	351	199	208	21.1666
UGGGCAUGG	chr15:57222256-57222581(+)$1	325	107	116	13.9047
uggggaagg	chr6:3319067-3319390(-)$1	323	170	179	17.3571
UGGGGAGGU	chr7:1909025-1909283(-)$1	258	144	153	17.9523
UGGGGUGGG	chr20:34248953-34249203(-)$1	250	156	165	18.1904
UGGGCAGGG	chr16:87520885-87521171(-)$1	286	148	157	17.2380
UGGGGAGGG	chr2:236431127-236431420(+)$1	293	39	48	21.1666
UGGGGCGGG	chr17:80223882-80224163(-)$1	281	145	154	18.0714
UGGGUAGGU	chr19:34877329-34877648(+)$1	319	285	294	13.9047
UGGGGUUGG	chr19:58195240-58195557(+)$1	317	127	136	14.8571
UGGGGAGGU	chr16:84803320-84803598(+)$1	278	5	14	17.9523
UGGGGAGGG	chr6:167344779-167345082(-)$1	303	51	60	21.1666
UGAGGAGGU	chr19:34883280-34883527(+)$1	247	10	19	13.9047

#otherMatches

#Struct PSSM
BB:::::::	chr21:46281381-46281704(-)$1	323	24	33	17.3571
d::JJJJJJ	chr4:87891956-87892264(+)$1	308	95	104	17.1190
b####bb[b	chr16:89360358-89360623(-)$1	265	87	96	16.6428
FF:BBKKJJ	chr6:159040458-159040763(+)$1	305	120	129	16.5238
sssssffff	chr22:19389344-19389638(-)$1	294	135	144	18.0714
eexxxxxxx	chr2:236431035-236431327(+)$1	292	131	140	21.1666
=========	chr4:107008372-107008681(-)$1	309	59	68	13.7857
ggDDDDYYF	chr1:212932919-212933215(-)$1	296	153	162	14.6190
======###	chr19:34882458-34882765(+)$1	307	134	143	13.9047
e]bb]bbee	chrX:73338766-73339063(-)$1	297	131	140	18.1904
gggg::fff	chr16:1361765-1362030(+)$1	265	98	107	14.7380
ZEEEEE}CC	chr17:76821450-76821820(-)$1	370	158	167	18.1904
xxxccc]ff	chr19:8545994-8546470(+)$1	476	355	364	17.4761
boooooobb	chr6:89791452-89791724(+)$1	272	124	133	17.3571
t========	chr16:89511796-89512070(-)$1	274	162	171	14.7380
CCFFFFFFK	chr21:45099025-45099291(+)$1	266	129	138	17.1190
FFF{A{DDD	chr2:61764264-61764566(-)$1	302	78	87	16.5238
$$$bb!!cc	chr19:57346307-57346563(-)$1	256	11	20	17.1190
!!iiiiiii	chr19:57350724-57351014(-)$1	290	36	45	18.0714
uuuuuuuuu	chr20:57467342-57467612(+)$1	270	237	246	17.1190
eeeeddddb	chr19:8517362-8517714(+)$1	352	175	184	17.0000
ddhhhhhhh	chr14:39736267-39736545(+)$1	278	103	112	14.1428
gggccc[a=	chrY:15017053-15017448(+)$1	395	165	174	17.1190
::::::ccc	chr3:187462660-187462948(-)$1	288	66	75	17.4761
dda]dddd:	chr20:13791642-13791950(+)$1	308	56	65	14.1428
e7777777e	chr2:118846106-118846360(+)$1	254	229	238	17.1190
EEEEDDDDf	chr12:133402597-133402857(-)$1	260	61	70	16.6428
dd]bbiiii	chr1:212933433-212933675(-)$1	242	84	93	17.2380
a[bbooooo	chr5:14404075-14404377(+)$1	302	10	19	16.4047
555a]a]ee	chr2:239356625-239356976(+)$1	351	199	208	21.1666
d]ccc]bbb	chr15:57222256-57222581(+)$1	325	107	116	13.9047
d]bb::::f	chr6:3319067-3319390(-)$1	323	170	179	17.3571
EEE~~~~DD	chr7:1909025-1909283(-)$1	258	144	153	17.9523
=dddd]iii	chr20:34248953-34249203(-)$1	250	156	165	18.1904
bqqqqqqqq	chr16:87520885-87521171(-)$1	286	148	157	17.2380
c4444dddd	chr2:236431127-236431420(+)$1	293	39	48	21.1666
======!!b	chr17:80223882-80224163(-)$1	281	145	154	18.0714
dddd]dddd	chr19:34877329-34877648(+)$1	319	285	294	13.9047
e[ffffffb	chr19:58195240-58195557(+)$1	317	127	136	14.8571
KDDDDKKCC	chr16:84803320-84803598(+)$1	278	5	14	17.9523
eeeee%%%%	chr6:167344779-167345082(-)$1	303	51	60	21.1666
mmmmbb]dd	chr19:34883280-34883527(+)$1	247	10	19	13.9047

#DB
((.......	chr21:46281381-46281704(-)$1	1	24	33	17.3571
)..((((((	chr4:87891956-87892264(+)$1	1	95	104	17.1190
(....((.(	chr16:89360358-89360623(-)$1	1	87	96	16.6428
)).((..((	chr6:159040458-159040763(+)$1	1	120	129	16.5238
.....))))	chr22:19389344-19389638(-)$1	1	135	144	18.0714
((.......	chr2:236431035-236431327(+)$1	1	131	140	21.1666
)))))))))	chr4:107008372-107008681(-)$1	1	59	68	13.7857
))))))..)	chr1:212932919-212933215(-)$1	1	153	162	14.6190
((((((...	chr19:34882458-34882765(+)$1	1	134	143	13.9047
).)).))((	chrX:73338766-73339063(-)$1	1	131	140	18.1904
))))..(((	chr16:1361765-1362030(+)$1	1	98	107	14.7380
.))))).))	chr17:76821450-76821820(-)$1	1	158	167	18.1904
...))).))	chr19:8545994-8546470(+)$1	1	355	364	17.4761
(......))	chr6:89791452-89791724(+)$1	1	124	133	17.3571
.))))))))	chr16:89511796-89512070(-)$1	1	162	171	14.7380
((((((((.	chr21:45099025-45099291(+)$1	1	129	138	17.1190
(((.(.(((	chr2:61764264-61764566(-)$1	1	78	87	16.5238
...((..((	chr19:57346307-57346563(-)$1	1	11	20	17.1190
..(((((((	chr19:57350724-57351014(-)$1	1	36	45	18.0714
.........	chr20:57467342-57467612(+)$1	1	237	246	17.1190
)))))))))	chr19:8517362-8517714(+)$1	1	175	184	17.0000
)))))))))	chr14:39736267-39736545(+)$1	1	103	112	14.1428
)))(((.((	chrY:15017053-15017448(+)$1	1	165	174	17.1190
......(((	chr3:187462660-187462948(-)$1	1	66	75	17.4761
))).)))).	chr20:13791642-13791950(+)$1	1	56	65	14.1428
).......)	chr2:118846106-118846360(+)$1	1	229	238	17.1190
(((((((((	chr12:133402597-133402857(-)$1	1	61	70	16.6428
)).))((((	chr1:212933433-212933675(-)$1	1	84	93	17.2380
(.((.....	chr5:14404075-14404377(+)$1	1	10	19	16.4047
...).).))	chr2:239356625-239356976(+)$1	1	199	208	21.1666
).))).))(	chr15:57222256-57222581(+)$1	1	107	116	13.9047
).))....(	chr6:3319067-3319390(-)$1	1	170	179	17.3571
)))....))	chr7:1909025-1909283(-)$1	1	144	153	17.9523
))))).)))	chr20:34248953-34249203(-)$1	1	156	165	18.1904
(........	chr16:87520885-87521171(-)$1	1	148	157	17.2380
)....))))	chr2:236431127-236431420(+)$1	1	39	48	21.1666
((((((..(	chr17:80223882-80224163(-)$1	1	145	154	18.0714
)))).))))	chr19:34877329-34877648(+)$1	1	285	294	13.9047
(.(((((((	chr19:58195240-58195557(+)$1	1	127	136	14.8571
.((((..((	chr16:84803320-84803598(+)$1	1	5	14	17.9523
(((((....	chr6:167344779-167345082(-)$1	1	51	60	21.1666
....)).))	chr19:34883280-34883527(+)$1	1	10	19	13.9047

#PSSM
U : 0.64	u : 0.21	G : 0.04	c : 0.02	a : 0.02	A : 0.02	C : 0.02	
G : 0.71	g : 0.23	a : 0.02	C : 0.02	
G : 0.69	g : 0.21	a : 0.04	A : 0.04	
G : 0.73	g : 0.23	u : 0.02	
G : 0.64	g : 0.21	C : 0.04	A : 0.02	u : 0.02	c : 0.02	U : 0.02	
A : 0.52	a : 0.21	U : 0.11	C : 0.09	c : 0.02	u : 0.02	
G : 0.61	g : 0.19	U : 0.09	u : 0.04	A : 0.02	a : 0.02	
G : 0.69	g : 0.26	C : 0.04	
G : 0.54	g : 0.23	U : 0.11	C : 0.04	A : 0.02	u : 0.02	

#score	709.9523809523814
#seq	42
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_transcript_m2_run1.nuc.txt

#NT
GGGGCCUGCGGGUGG	chr21:45739240-45739466(+)$1	226	193	208	17.3000
GGGGUGUGGGCGGGG	chr19:1882000-1882272(-)$1	272	154	169	20.2000
GAUGUGGGGGGGGGG	chr17:230843-231108(-)$1	265	96	111	20.4000
GGUGGGGGGGGGUGG	chrX:16804798-16805126(+)$1	328	66	81	23.8000
GGUGUGAGUGGGUGG	chr13:30118061-30118324(-)$1	263	110	125	19.5000
gggaugugggggagg	chr7:5454713-5454993(-)$1	280	210	225	21.1000
GGGGUGUGGAGGGCG	chr19:49607046-49607286(+)$1	240	91	106	16.6000
GGGGGGGGGGGGUGG	chr6:143265365-143265609(-)$1	244	99	114	27.0000
gcgagugggggGUGG	chr13:113761051-113761290(+)$1	239	7	22	16.4000
gggguaggggcgugg	chr2:98205557-98205876(-)$1	319	168	183	21.4000
GGGGCGGGGGGCCGG	chr19:2227548-2227810(+)$1	262	1	16	20.7000
AGGCUGGCGGGGAGG	chr19:33555383-33555690(-)$1	307	147	162	16.7000
GGGGUGGGGGGGUGG	chr4:74123546-74123798(-)$1	252	109	124	29.4000
AAGGUGGAGGGGUGG	chr19:5697763-5698027(-)$1	264	21	36	17.5000
GGCCUGGGGGCGGGG	chr11:64879634-64879963(+)$1	329	145	160	17.2000
ggggcggcucggugg	chr21:47565675-47565906(-)$1	231	140	155	16.6000
GGGGUGGGAAGGGGG	chr16:28996205-28996459(+)$1	254	98	113	20.6000
gggcuggggagcugg	chr7:158197500-158197782(-)$1	282	225	240	19.4000
UGGGCGGCGGGCUGG	chr20:36014878-36015136(+)$1	258	18	33	15.7000
GGCGGGGGCGGGUGG	chr19:7678085-7678419(+)$1	334	4	19	20.3000
GGAGUGGGUGGAGGG	chr9:130159961-130160272(+)$1	311	154	169	17.1000
UGGCUGAGGGGGUGG	chr1:21934423-21934728(-)$1	305	140	155	19.5000
GGAGUGGGGGAGUGG	chr16:4744391-4744693(+)$1	302	101	116	21.9000
GGGAAGGGGCGGAGG	chr17:79963664-79963891(+)$1	227	17	32	17.4000
gggcugggcggggag	chr8:145638332-145638602(-)$1	270	26	41	17.6000
GUGGGGGUGGGGUGG	chr20:5172881-5173165(+)$1	284	106	121	19.0000
GGUGUAGGCGGGAGG	chr17:73873521-73873838(-)$1	317	147	162	16.8000
GGGGUCUCAGGGUGG	chr20:34798031-34798305(+)$1	274	236	251	15.7000
GAGGAGAGGGGAUGG	chr9:134488251-134488499(-)$1	248	111	126	15.4000
GGAUUGGGGGGAAGG	chrX:153197583-153197879(-)$1	296	209	224	16.8000
GGGGUGUGGGGGCUG	chr3:127388107-127388460(+)$1	353	180	195	19.6000
gggauggagggaugg	chr6:170049863-170050229(-)$1	366	230	245	18.7000
ggggcgggugggugc	chr22:33155960-33156301(-)$1	341	108	123	19.5000
GGGGUGGGGUGGAGG	chr17:1648289-1648555(+)$1	266	87	102	23.3000
UGGGUUGGGGGGUUG	chr3:125093585-125093834(-)$1	249	93	108	17.4000
ggggugggggggugg	chr3:140660937-140661200(+)$1	263	83	98	29.4000
GAGCUGGGGAGGUGG	chr2:170684862-170685171(+)$1	309	154	169	19.6000
GGGCUGGGGUGGGAG	chr17:77082321-77082595(+)$1	274	228	243	17.1000
gggcuuggggugugg	chr22:50316405-50316719(+)$1	314	99	114	18.7000
GGGCUGGGAGGGCAG	chr11:66628855-66629064(-)$1	209	69	84	16.9000
GGAUUGGGCGGGUGG	chr8:125675497-125675785(-)$1	288	31	46	19.9000
GGGGCGGCGGGGGGA	chr17:79986598-79986938(+)$1	340	125	140	17.1000
ggaacgggggggugg	chr14:105351150-105351401(+)$1	251	26	41	21.3000
GGGGCCUGGGGGUGC	chr17:79913402-79913653(-)$1	251	7	22	16.0000
GGUGGGAGGGGGUGG	chr8:145578703-145578969(-)$1	266	106	121	20.4000
gcggcgguggggggg	chr19:47733482-47733747(-)$1	265	74	89	17.5000
GGAGCAGGGAGGUGG	chr9:137244019-137244279(+)$1	260	112	127	16.9000
UGGGGGUGGGGGUGG	chr12:69202383-69202713(+)$1	330	119	134	20.0000
ggggugggguggugg	chr17:6766086-6766350(+)$1	264	136	151	25.7000

#otherMatches

#Struct PSSM
2a666666eeeee22	chr17:2608609-2608873(-)$1	264	78	93	19.6000
EEEE}DDDDCCC}CC	chr21:45739240-45739466(+)$1	226	193	208	17.3000
=========[aqqqq	chr19:1882000-1882272(-)$1	272	154	169	20.2000
!!a[a[a[a%%%%%%	chr17:230843-231108(-)$1	265	96	111	20.4000
33==========]gg	chrX:16804798-16805126(+)$1	328	66	81	23.8000
ccc!!eeeee[ffff	chr13:30118061-30118324(-)$1	263	110	125	19.5000
fffff[gggggggpp	chr7:5454713-5454993(-)$1	280	210	225	21.1000
fffffhhhhhhhh]i	chr19:49607046-49607286(+)$1	240	91	106	16.6000
eeee[bb[hhhhhhh	chr6:143265365-143265609(-)$1	244	99	114	27.0000
QQQQQQIIIIIIIII	chr13:113761051-113761290(+)$1	239	7	22	16.4000
3bb]dddd]bb]a33	chr2:98205557-98205876(-)$1	319	168	183	21.4000
{GGGGGGGDDDD{EE	chr19:2227548-2227810(+)$1	262	1	16	20.7000
3eeeeecccFFFFFF	chr19:33555383-33555690(-)$1	307	147	162	16.7000
ccc[bb"""iiiiii	chr4:74123546-74123798(-)$1	252	109	124	29.4000
""bb[ffffff[ddd	chr19:5697763-5698027(-)$1	264	21	36	17.5000
""ccc!!eeeeexxx	chr11:64879634-64879963(+)$1	329	145	160	17.2000
mdddd]bb22dddd2	chr21:47565675-47565906(-)$1	231	140	155	16.6000
gggg55555======	chr16:28996205-28996459(+)$1	254	98	113	20.6000
3dddd4444dddd33	chr7:158197500-158197782(-)$1	282	225	240	19.4000
EEEE{BB{CCCKKCC	chr20:36014878-36015136(+)$1	258	18	33	15.7000
DDDMMMMBBLLLDDD	chr19:7678085-7678419(+)$1	334	4	19	20.3000
ffff]ffffff]ccc	chr9:130159961-130160272(+)$1	311	154	169	17.1000
a[cccnnnnnccc]a	chr1:21934423-21934728(-)$1	305	140	155	19.5000
qqqqqqqdddd]ccc	chr16:4744391-4744693(+)$1	302	101	116	21.9000
qbb]ffffff:CCC{	chr17:79963664-79963891(+)$1	227	17	32	17.4000
eeeee!!bb%%%%%%	chr8:145638332-145638602(-)$1	270	26	41	17.6000
EEEE{DDDD:CCC{E	chr20:5172881-5173165(+)$1	284	106	121	19.0000
ddd[ccc[a[bbooo	chr17:73873521-73873838(-)$1	317	147	162	16.8000
ggmmmmggggggg]a	chr20:34798031-34798305(+)$1	274	236	251	15.7000
llbb:JJJJJJJJJJ	chr9:134488251-134488499(-)$1	248	111	126	15.4000
dd[ccc[a[ccc$$$	chrX:153197583-153197879(-)$1	296	209	224	16.8000
55ccc]ccc]cccee	chr3:127388107-127388460(+)$1	353	180	195	19.6000
^^^^^^^^^^^^^^^	chr6:170049863-170050229(-)$1	366	230	245	18.7000
h[a[annnnna]a]h	chr22:33155960-33156301(-)$1	341	108	123	19.5000
iiiiiiiii"""fff	chr17:1648289-1648555(+)$1	266	87	102	23.3000
c]dddd22bb]ccc:	chr3:125093585-125093834(-)$1	249	93	108	17.4000
22dddd]a]a]bb55	chr3:140660937-140661200(+)$1	263	83	98	29.4000
ggggggg55555ggg	chr2:170684862-170685171(+)$1	309	154	169	19.6000
hhhhhhhh22bb]dd	chr17:77082321-77082595(+)$1	274	228	243	17.1000
"dddd[ccc[a[bb!	chr22:50316405-50316719(+)$1	314	99	114	18.7000
]ffffffFFFFFFDD	chr11:66628855-66629064(-)$1	209	69	84	16.9000
FFFF:dddd[ccc[d	chr8:125675497-125675785(-)$1	288	31	46	19.9000
eeee:JJJJJJJJJJ	chr17:79986598-79986938(+)$1	340	125	140	17.1000
nnnnbb]ffffff::	chr14:105351150-105351401(+)$1	251	26	41	21.3000
HHHHHHHH{EEEEE:	chr17:79913402-79913653(-)$1	251	7	22	16.0000
JJJJJJ{CCCfffff	chr8:145578703-145578969(-)$1	266	106	121	20.4000
{A{A{FFFFFFbb[b	chr19:47733482-47733747(-)$1	265	74	89	17.5000
JJJJJJJJJJJJ{CC	chr9:137244019-137244279(+)$1	260	112	127	16.9000
[bb[ccc####gggg	chr12:69202383-69202713(+)$1	330	119	134	20.0000
tttttttdddd]ddd	chr17:6766086-6766350(+)$1	264	136	151	25.7000

#DB
.)......)))))..	chr17:2608609-2608873(-)$1	1	78	93	19.6000
)))).))))))).))	chr21:45739240-45739466(+)$1	1	193	208	17.3000
(((((((((.(....	chr19:1882000-1882272(-)$1	1	154	169	20.2000
..(.(.(.(......	chr17:230843-231108(-)$1	1	96	111	20.4000
..)))))))))).))	chrX:16804798-16805126(+)$1	1	66	81	23.8000
(((..(((((.((((	chr13:30118061-30118324(-)$1	1	110	125	19.5000
(((((.(((((((..	chr7:5454713-5454993(-)$1	1	210	225	21.1000
))))))))))))).)	chr19:49607046-49607286(+)$1	1	91	106	16.6000
((((.((.(((((((	chr6:143265365-143265609(-)$1	1	99	114	27.0000
......(((((((((	chr13:113761051-113761290(+)$1	1	7	22	16.4000
.)).)))).)).)..	chr2:98205557-98205876(-)$1	1	168	183	21.4000
.(((((((((((.((	chr19:2227548-2227810(+)$1	1	1	16	20.7000
.))))))))))))))	chr19:33555383-33555690(-)$1	1	147	162	16.7000
(((.((...((((((	chr4:74123546-74123798(-)$1	1	109	124	29.4000
..((.((((((.(((	chr19:5697763-5698027(-)$1	1	21	36	17.5000
..(((..(((((...	chr11:64879634-64879963(+)$1	1	145	160	17.2000
.)))).))..)))).	chr21:47565675-47565906(-)$1	1	140	155	16.6000
)))).....))))))	chr16:28996205-28996459(+)$1	1	98	113	20.6000
.))))....))))..	chr7:158197500-158197782(-)$1	1	225	240	19.4000
((((.((.(((..((	chr20:36014878-36015136(+)$1	1	18	33	15.7000
(((....((...(((	chr19:7678085-7678419(+)$1	1	4	19	20.3000
)))).)))))).)))	chr9:130159961-130160272(+)$1	1	154	169	17.1000
(.(((.....))).)	chr1:21934423-21934728(-)$1	1	140	155	19.5000
.......)))).)))	chr16:4744391-4744693(+)$1	1	101	116	21.9000
.)).)))))).(((.	chr17:79963664-79963891(+)$1	1	17	32	17.4000
(((((..((......	chr8:145638332-145638602(-)$1	1	26	41	17.6000
((((.((((.(((.(	chr20:5172881-5173165(+)$1	1	106	121	19.0000
(((.(((.(.((...	chr17:73873521-73873838(-)$1	1	147	162	16.8000
((....))))))).)	chr20:34798031-34798305(+)$1	1	236	251	15.7000
..)).))))))))))	chr9:134488251-134488499(-)$1	1	111	126	15.4000
((.(((.(.(((...	chrX:153197583-153197879(-)$1	1	209	224	16.8000
..))).))).)))))	chr3:127388107-127388460(+)$1	1	180	195	19.6000
...............	chr6:170049863-170050229(-)$1	1	230	245	18.7000
(.(.(.....).).)	chr22:33155960-33156301(-)$1	1	108	123	19.5000
(((((((((...(((	chr17:1648289-1648555(+)$1	1	87	102	23.3000
).))))..)).))).	chr3:125093585-125093834(-)$1	1	93	108	17.4000
..)))).).).))..	chr3:140660937-140661200(+)$1	1	83	98	29.4000
))))))).....)))	chr2:170684862-170685171(+)$1	1	154	169	19.6000
))))))))..)).))	chr17:77082321-77082595(+)$1	1	228	243	17.1000
.((((.(((.(.((.	chr22:50316405-50316719(+)$1	1	99	114	18.7000
.))))))((((((((	chr11:66628855-66629064(-)$1	1	69	84	16.9000
((((.((((.(((.(	chr8:125675497-125675785(-)$1	1	31	46	19.9000
)))).))))))))))	chr17:79986598-79986938(+)$1	1	125	140	17.1000
....)).))))))..	chr14:105351150-105351401(+)$1	1	26	41	21.3000
((((((((.(((((.	chr17:79913402-79913653(-)$1	1	7	22	16.0000
((((((.((((((((	chr8:145578703-145578969(-)$1	1	106	121	20.4000
.(.(.((((((((.(	chr19:47733482-47733747(-)$1	1	74	89	17.5000
((((((((((((.((	chr9:137244019-137244279(+)$1	1	112	127	16.9000
.((.(((....((((	chr12:69202383-69202713(+)$1	1	119	134	20.0000
.......)))).)))	chr17:6766086-6766350(+)$1	1	136	151	25.7000

#PSSM
G : 0.60	g : 0.27	U : 0.08	A : 0.04	
G : 0.62	g : 0.21	A : 0.08	c : 0.06	U : 0.02	
G : 0.48	g : 0.25	U : 0.10	A : 0.10	C : 0.04	a : 0.02	
G : 0.54	g : 0.14	C : 0.12	a : 0.08	c : 0.06	U : 0.04	A : 0.02	
U : 0.44	u : 0.18	C : 0.12	G : 0.12	c : 0.08	A : 0.04	g : 0.02	
G : 0.60	g : 0.21	C : 0.06	u : 0.04	A : 0.04	a : 0.02	U : 0.02	
G : 0.50	g : 0.25	U : 0.14	A : 0.08	u : 0.02	
G : 0.60	g : 0.21	C : 0.08	A : 0.02	c : 0.02	U : 0.02	a : 0.02	u : 0.02	
G : 0.54	g : 0.19	C : 0.08	A : 0.06	U : 0.04	u : 0.04	a : 0.02	c : 0.02	
G : 0.58	g : 0.21	A : 0.08	U : 0.04	c : 0.02	a : 0.02	C : 0.02	u : 0.02	
G : 0.66	g : 0.23	C : 0.04	c : 0.02	A : 0.02	u : 0.02	
G : 0.64	g : 0.21	A : 0.06	C : 0.04	c : 0.02	a : 0.02	
U : 0.42	u : 0.18	G : 0.16	A : 0.10	C : 0.06	g : 0.04	c : 0.02	a : 0.02	
G : 0.64	g : 0.23	U : 0.04	A : 0.04	C : 0.02	a : 0.02	
G : 0.70	g : 0.23	c : 0.02	A : 0.02	C : 0.02	

#score	969.6000000000012
#seq	50
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_transcript_m3_run2.nuc.txt

#NT
GAGGAGGAAG	chr11:35684483-35684749(+)$1	266	98	108	16.7346
GAGGAAGAAG	chr11:3023673-3023933(-)$1	260	117	127	20.3061
GAGGGAGAGC	chr19:45899333-45899605(-)$1	272	140	150	17.9591
GAGGAAGAGU	chr2:3244832-3245074(-)$1	242	162	172	20.6122
gaagaagagg	chr2:232325441-232325677(-)$1	236	198	208	20.1020
gaggaagagg	chr17:4575257-4575595(-)$1	338	19	29	24.1836
gaggcagagg	chr19:37500403-37500660(+)$1	257	158	168	21.1224
gaggaagaag	chr9:100777582-100777870(+)$1	288	65	75	20.3061
gagggagagg	chr7:158664003-158664287(+)$1	284	26	36	20.9183
GAGGCACAGG	chr16:85673516-85673827(+)$1	311	16	26	16.3265
GAGGCAGAGA	chr9:123624983-123625268(-)$1	285	148	158	17.5510
GGGGAAGAGC	chr16:85660264-85660501(+)$1	237	71	81	16.6326
CAGGGAGAGG	chr22:50018559-50018895(-)$1	336	68	78	16.5306
CAGGAAGAGC	chr16:89038164-89038408(-)$1	244	158	168	16.8367
gaggaagagg	chr1:94341723-94341981(-)$1	258	54	64	24.1836
gaggaagaug	chr1:186295138-186295353(-)$1	215	1	11	20.2040
GAGGAGGCGG	chr16:89350128-89350409(-)$1	281	120	130	16.4285
GGGGAAGAGC	chr16:89030474-89030721(-)$1	247	108	118	16.6326
GAGGGUGAGG	chr12:132445031-132445279(+)$1	248	202	212	17.4489
GAGGACGAGG	chr22:50875244-50875512(+)$1	268	202	212	20.3061
GAGGAGGGGG	chr19:50284934-50285182(+)$1	248	180	190	16.2244
gaggaagugg	chr19:15366773-15367023(-)$1	250	60	70	19.7959
GAGGGAGAGU	chr22:50017533-50017773(-)$1	240	114	124	17.3469
GAAGAAGAGG	chr14:94545464-94545908(-)$1	444	66	76	20.1020
GAGGCAGAGG	chr12:46320134-46320394(-)$1	260	128	138	21.1224
GAGGAAGAAC	chr13:107211694-107211929(-)$1	235	3	13	17.3469
GAGGAAGAGG	chr19:49376796-49377015(+)$1	219	183	193	24.1836
GAGGAAGAGG	chr19:49377876-49378111(+)$1	235	84	94	24.1836
gaggaagagg	chr16:85701855-85702128(+)$1	273	69	79	24.1836
gaggaagaga	chr4:13338729-13338975(+)$1	246	62	72	20.6122
GAGGAAGAGC	chr22:50011776-50012067(-)$1	291	117	127	21.2244
GAGGAUGAUG	chr12:6709632-6709860(-)$1	228	28	38	16.7346
GAAGAAGAGG	chr6:4032034-4032332(+)$1	298	149	159	20.1020
GAGGAAGAGG	chr8:144889647-144889940(-)$1	293	210	220	24.1836
gaggaagagg	chr4:174253129-174253346(-)$1	217	89	99	24.1836
GAGGCAGAGC	chr22:36684315-36684551(-)$1	236	104	114	18.1632
gaggaugagg	chr11:129992098-129992328(+)$1	230	162	172	20.7142
gaggaagagg	chr4:174253122-174253329(-)$1	207	72	82	24.1836
GAUGAGGAGG	chr22:19708818-19709051(+)$1	233	104	114	16.2244
gaggaagagg	chr6:31857144-31857446(-)$1	302	112	122	24.1836
GAGGAAGCGG	chr16:85647234-85647472(+)$1	238	215	225	20.0000
GAGGAUGAGG	chr15:93552329-93552588(+)$1	259	53	63	20.7142
CAGGAAGAGG	chr12:133365610-133365888(-)$1	278	80	90	19.7959
gaggaagagg	chr4:69202661-69203005(-)$1	344	74	84	24.1836
gaagaagagg	chr3:184039713-184039955(+)$1	242	39	49	20.1020
GAGGCAGAGG	chr1:171510473-171510700(+)$1	227	162	172	21.1224
GAGGAUGAUG	chrX:53588643-53588918(-)$1	275	33	43	16.7346
gaggcagagg	chr19:943514-943778(+)$1	264	122	132	21.1224

#otherMatches

#Struct PSSM
::::::CCC{	chr17:61895477-61895743(+)$1	266	57	67	17.0408
++++++++++	chr11:35684483-35684749(+)$1	266	98	108	16.7346
eeee::::::	chr11:3023673-3023933(-)$1	260	117	127	20.3061
!!bb####bb	chr19:45899333-45899605(-)$1	272	140	150	17.9591
==========	chr2:3244832-3245074(-)$1	242	162	172	20.6122
DYYJJJJJJJ	chr2:232325441-232325677(-)$1	236	198	208	20.1020
:::::ddddq	chr17:4575257-4575595(-)$1	338	19	29	24.1836
{EEEEEffff	chr19:37500403-37500660(+)$1	257	158	168	21.1224
g22bb333cc	chr9:100777582-100777870(+)$1	288	65	75	20.3061
{FFFFFFKKC	chr7:158664003-158664287(+)$1	284	26	36	20.9183
G{CCC:::::	chr16:85673516-85673827(+)$1	311	16	26	16.3265
c]dddddddd	chr9:123624983-123625268(-)$1	285	148	158	17.5510
ddpppppppd	chr16:85660264-85660501(+)$1	237	71	81	16.6326
:::::::::a	chr22:50018559-50018895(-)$1	336	68	78	16.5306
BYYFFFFFF}	chr16:89038164-89038408(-)$1	244	158	168	16.8367
BFFFFFF::f	chr1:94341723-94341981(-)$1	258	54	64	24.1836
:::::BB{CC	chr1:186295138-186295353(-)$1	215	1	11	20.2040
ttttttbb]a	chr16:89350128-89350409(-)$1	281	120	130	16.4285
dd::::eeee	chr16:89030474-89030721(-)$1	247	108	118	16.6326
::eeeee[bb	chr12:132445031-132445279(+)$1	248	202	212	17.4489
gggg:A}EEE	chr22:50875244-50875512(+)$1	268	202	212	20.3061
IIIIIIIICC	chr19:50284934-50285182(+)$1	248	180	190	16.2244
DDD{DDDDEE	chr19:15366773-15367023(-)$1	250	60	70	19.7959
IIIIII:::c	chr22:50017533-50017773(-)$1	240	114	124	17.3469
::::::::HH	chr14:94545464-94545908(-)$1	444	66	76	20.1020
ddd]eeeee:	chr12:46320134-46320394(-)$1	260	128	138	21.1224
EEEE{FFFFF	chr13:107211694-107211929(-)$1	235	3	13	17.3469
55555fffff	chr19:49376796-49377015(+)$1	219	183	193	24.1836
C{CCC{A{BB	chr19:49377876-49378111(+)$1	235	84	94	24.1836
22bb::::::	chr16:85701855-85702128(+)$1	273	69	79	24.1836
::::::::::	chr4:13338729-13338975(+)$1	246	62	72	20.6122
[bboooooob	chr22:50011776-50012067(-)$1	291	117	127	21.2244
EEEEE{BB{C	chr12:6709632-6709860(-)$1	228	28	38	16.7346
nnnnndddd2	chr6:4032034-4032332(+)$1	298	149	159	20.1020
]ccc::FFFF	chr8:144889647-144889940(-)$1	293	210	220	24.1836
:::::hhhhh	chr4:174253129-174253346(-)$1	217	89	99	24.1836
eeee22dddd	chr22:36684315-36684551(-)$1	236	104	114	18.1632
:EEEEE}JJJ	chr11:129992098-129992328(+)$1	230	162	172	20.7142
:::::hhhhh	chr4:174253122-174253329(-)$1	207	72	82	24.1836
qqa22a22ff	chr22:19708818-19709051(+)$1	233	104	114	16.2244
d]dddd]ccc	chr6:31857144-31857446(-)$1	302	112	122	24.1836
444a22====	chr16:85647234-85647472(+)$1	238	215	225	20.0000
]aJJJJJJJJ	chr15:93552329-93552588(+)$1	259	53	63	20.7142
dddppppppp	chr12:133365610-133365888(-)$1	278	80	90	19.7959
PPPPPPPDDD	chr4:69202661-69203005(-)$1	344	74	84	24.1836
::::::::::	chr3:184039713-184039955(+)$1	242	39	49	20.1020
EEEEEA}CCC	chr1:171510473-171510700(+)$1	227	162	172	21.1224
vvvvvvvvvv	chrX:53588643-53588918(-)$1	275	33	43	16.7346
IIIBBYYIII	chr19:943514-943778(+)$1	264	122	132	21.1224

#DB
......(((.	chr17:61895477-61895743(+)$1	1	57	67	17.0408
..........	chr11:35684483-35684749(+)$1	1	98	108	16.7346
))))......	chr11:3023673-3023933(-)$1	1	117	127	20.3061
..((....((	chr19:45899333-45899605(-)$1	1	140	150	17.9591
((((((((((	chr2:3244832-3245074(-)$1	1	162	172	20.6122
)..)))))))	chr2:232325441-232325677(-)$1	1	198	208	20.1020
.....((((.	chr17:4575257-4575595(-)$1	1	19	29	24.1836
.(((((((((	chr19:37500403-37500660(+)$1	1	158	168	21.1224
)..))...))	chr9:100777582-100777870(+)$1	1	65	75	20.3061
.((((((..(	chr7:158664003-158664287(+)$1	1	26	36	20.9183
(.(((.....	chr16:85673516-85673827(+)$1	1	16	26	16.3265
).))))))))	chr9:123624983-123625268(-)$1	1	148	158	17.5510
((.......)	chr16:85660264-85660501(+)$1	1	71	81	16.6326
.........(	chr22:50018559-50018895(-)$1	1	68	78	16.5306
)..)))))).	chr16:89038164-89038408(-)$1	1	158	168	16.8367
(((((((..(	chr1:94341723-94341981(-)$1	1	54	64	24.1836
.....((.((	chr1:186295138-186295353(-)$1	1	1	11	20.2040
......)).)	chr16:89350128-89350409(-)$1	1	120	130	16.4285
))....((((	chr16:89030474-89030721(-)$1	1	108	118	16.6326
..(((((.((	chr12:132445031-132445279(+)$1	1	202	212	17.4489
)))).).)))	chr22:50875244-50875512(+)$1	1	202	212	20.3061
))))))))))	chr19:50284934-50285182(+)$1	1	180	190	16.2244
(((.((((((	chr19:15366773-15367023(-)$1	1	60	70	19.7959
))))))...(	chr22:50017533-50017773(-)$1	1	114	124	17.3469
........))	chr14:94545464-94545908(-)$1	1	66	76	20.1020
))).))))).	chr12:46320134-46320394(-)$1	1	128	138	21.1224
((((.(((((	chr13:107211694-107211929(-)$1	1	3	13	17.3469
.....)))))	chr19:49376796-49377015(+)$1	1	183	193	24.1836
(.(((.(.((	chr19:49377876-49378111(+)$1	1	84	94	24.1836
..))......	chr16:85701855-85702128(+)$1	1	69	79	24.1836
..........	chr4:13338729-13338975(+)$1	1	62	72	20.6122
.((......)	chr22:50011776-50012067(-)$1	1	117	127	21.2244
(((((.((.(	chr12:6709632-6709860(-)$1	1	28	38	16.7346
.....)))).	chr6:4032034-4032332(+)$1	1	149	159	20.1020
.)))..))))	chr8:144889647-144889940(-)$1	1	210	220	24.1836
.....(((((	chr4:174253129-174253346(-)$1	1	89	99	24.1836
))))..))))	chr22:36684315-36684551(-)$1	1	104	114	18.1632
.))))).)))	chr11:129992098-129992328(+)$1	1	162	172	20.7142
.....(((((	chr4:174253122-174253329(-)$1	1	72	82	24.1836
..)..)..))	chr22:19708818-19709051(+)$1	1	104	114	16.2244
).)))).)))	chr6:31857144-31857446(-)$1	1	112	122	24.1836
...)..))))	chr16:85647234-85647472(+)$1	1	215	225	20.0000
.)((((((((	chr15:93552329-93552588(+)$1	1	53	63	20.7142
(((.......	chr12:133365610-133365888(-)$1	1	80	90	19.7959
.......(((	chr4:69202661-69203005(-)$1	1	74	84	24.1836
..........	chr3:184039713-184039955(+)$1	1	39	49	20.1020
)))))).)))	chr1:171510473-171510700(+)$1	1	162	172	21.1224
..........	chrX:53588643-53588918(-)$1	1	33	43	16.7346
)))))..)))	chr19:943514-943778(+)$1	1	122	132	21.1224

#PSSM
G : 0.59	g : 0.34	C : 0.06	
A : 0.61	a : 0.34	G : 0.04	
G : 0.59	g : 0.30	a : 0.04	A : 0.04	U : 0.02	
G : 0.65	g : 0.34	
A : 0.46	a : 0.28	C : 0.10	G : 0.08	c : 0.04	g : 0.02	
A : 0.46	a : 0.32	G : 0.08	U : 0.08	C : 0.02	u : 0.02	
G : 0.63	g : 0.34	C : 0.02	
A : 0.57	a : 0.32	C : 0.06	G : 0.02	u : 0.02	
G : 0.55	g : 0.30	A : 0.06	U : 0.04	a : 0.02	u : 0.02	
G : 0.42	g : 0.32	C : 0.16	U : 0.04	A : 0.02	a : 0.02	

#score	977.1428571428567
#seq	49
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_transcript_m3_run1.nuc.txt

#NT
CUGU	chr11:61555579-61555850(+)$1	271	44	48	12.0000
CUGU	chr5:137088284-137088555(-)$1	271	69	73	12.0000
CUGU	chr10:7791241-7791488(+)$1	247	102	106	12.0000
CUGU	chr16:2569993-2570292(+)$1	299	60	64	12.0000
CUGU	chr2:220403745-220403984(-)$1	239	20	24	12.0000
cugu	chr19:56181690-56182014(+)$1	324	104	108	12.0000
CUGU	chr21:46282857-46283070(-)$1	213	22	26	12.0000
CUGU	chr19:18704233-18704490(-)$1	257	43	47	12.0000
CUGU	chr12:46752272-46752596(-)$1	324	3	7	12.0000
cugu	chr13:111314373-111314609(-)$1	236	206	210	12.0000
CUGU	chr6:170686094-170686310(+)$1	216	26	30	12.0000
CUGU	chr17:66526556-66526803(+)$1	247	22	26	12.0000
CUGU	chr13:113380513-113380751(+)$1	238	82	86	12.0000
CUGU	chr14:69847080-69847336(-)$1	256	141	145	12.0000
CUGU	chrX:131506498-131506847(-)$1	349	56	60	12.0000
CUGU	chr3:48664457-48664779(-)$1	322	48	52	12.0000
CUGU	chr2:130919691-130919978(-)$1	287	28	32	12.0000
CUGU	chr2:240287769-240287998(-)$1	229	33	37	12.0000
CUGU	chr5:139646445-139646721(-)$1	276	9	13	12.0000
CUGU	chr2:171573458-171573682(+)$1	224	83	87	12.0000
CUGU	chr12:66359808-66360071(+)$1	263	40	44	12.0000
CUGU	chr7:1193813-1194118(-)$1	305	67	71	12.0000
CUGU	chr2:130878538-130878850(-)$1	312	36	40	12.0000
CUGU	chr22:38203104-38203326(+)$1	222	94	98	12.0000
CUGU	chrX:132669805-132670064(-)$1	259	16	20	12.0000
CUGU	chr17:61822863-61823137(-)$1	274	132	136	12.0000
CUGU	chr2:240287317-240287580(-)$1	263	38	42	12.0000
CUGU	chr15:44063545-44063825(+)$1	280	3	7	12.0000
CUGU	chr15:44063396-44063644(+)$1	248	152	156	12.0000
CUGU	chr2:240287380-240287638(-)$1	258	35	39	12.0000
CUGU	chr22:33156420-33156693(-)$1	273	65	69	12.0000
CUGU	chr20:34633684-34633928(-)$1	244	59	63	12.0000
CUGU	chr4:719377-719698(+)$1	321	13	17	12.0000
cugu	chr7:100172941-100173218(-)$1	277	62	66	12.0000
CUGU	chr6:131201056-131201264(-)$1	208	6	10	12.0000
CUGU	chr6:30711634-30711886(-)$1	252	73	77	12.0000
CUGU	chr22:29190656-29190890(-)$1	234	148	152	12.0000
cugu	chr17:80807681-80807927(+)$1	246	72	76	12.0000
CUGU	chr1:43392208-43392450(-)$1	242	18	22	12.0000
CUGU	chr13:113760339-113760597(+)$1	258	12	16	12.0000
CUGU	chr20:43955681-43955941(-)$1	260	197	201	12.0000
cugu	chr19:18390494-18390736(-)$1	242	75	79	12.0000
CUGU	chr14:70238524-70238769(+)$1	245	163	167	12.0000
CUGU	chr6:142767043-142767431(+)$1	388	43	47	12.0000
CUGU	chr6:33171733-33172018(+)$1	285	71	75	12.0000
CUGU	chr2:96850973-96851219(-)$1	246	116	120	12.0000
CUGU	chr12:46752006-46752278(-)$1	272	188	192	12.0000
CUGU	chr19:42752313-42752542(-)$1	229	131	135	12.0000
CUGU	chr5:52781897-52782150(+)$1	253	59	63	12.0000
CUGU	chr1:55530327-55530596(+)$1	269	0	4	12.0000
CUGU	chr2:132268146-132268429(+)$1	283	32	36	12.0000
CUGU	chr1:145440943-145441153(+)$1	210	129	133	12.0000
cugu	chr16:3104146-3104421(-)$1	275	11	15	12.0000
CUGU	chr12:46751940-46752206(-)$1	266	116	120	12.0000
CUGU	chr22:29196303-29196563(-)$1	260	108	112	12.0000
CUGU	chr16:87740364-87740602(-)$1	238	107	111	12.0000
CUGU	chr2:102508245-102508511(+)$1	266	165	169	12.0000
CUGU	chr20:48808770-48809032(+)$1	262	227	231	12.0000
CUGU	chr2:43453579-43453839(-)$1	260	15	19	12.0000
CUGU	chr20:60710058-60710370(+)$1	312	45	49	12.0000
CUGU	chr14:24114555-24114807(+)$1	252	236	240	12.0000
cugu	chr16:3104259-3104499(-)$1	240	21	25	12.0000
CUGU	chr22:50357488-50357731(+)$1	243	3	7	12.0000
CUGU	chr10:74035504-74035776(+)$1	272	181	185	12.0000
CUGU	chr10:120927197-120927446(-)$1	249	236	240	12.0000
CUGU	chr20:30193925-30194175(+)$1	250	33	37	12.0000
CUGU	chr7:6505613-6505898(-)$1	285	46	50	12.0000
CUGU	chr2:135206772-135207065(+)$1	293	107	111	12.0000
CUGU	chr15:44086061-44086286(+)$1	225	140	144	12.0000
CUGU	chr17:8369180-8369479(+)$1	299	17	21	12.0000
CUGU	chr1:43392302-43392551(-)$1	249	33	37	12.0000
CUGU	chr13:113380061-113380306(+)$1	245	39	43	12.0000
CUGU	chr10:724285-724583(-)$1	298	223	227	12.0000
CUGU	chr1:44088990-44089266(+)$1	276	112	116	12.0000
CUGU	chr17:48940563-48940813(-)$1	250	119	123	12.0000

#otherMatches

#Struct PSSM
eeee	chr6:41757421-41757701(+)$1	280	95	99	12.0000
HHHH	chr11:61555579-61555850(+)$1	271	44	48	12.0000
dd]c	chr5:137088284-137088555(-)$1	271	69	73	12.0000
dddd	chr10:7791241-7791488(+)$1	247	102	106	12.0000
KKBB	chr16:2569993-2570292(+)$1	299	60	64	12.0000
hhh[	chr2:220403745-220403984(-)$1	239	20	24	12.0000
::::	chr19:56181690-56182014(+)$1	324	104	108	12.0000
A{DD	chr21:46282857-46283070(-)$1	213	22	26	12.0000
b22a	chr19:18704233-18704490(-)$1	257	43	47	12.0000
ffff	chr12:46752272-46752596(-)$1	324	3	7	12.0000
iiii	chr13:111314373-111314609(-)$1	236	206	210	12.0000
:::F	chr6:170686094-170686310(+)$1	216	26	30	12.0000
eeee	chr17:66526556-66526803(+)$1	247	22	26	12.0000
cc]a	chr13:113380513-113380751(+)$1	238	82	86	12.0000
ccqq	chr14:69847080-69847336(-)$1	256	141	145	12.0000
ccoo	chrX:131506498-131506847(-)$1	349	56	60	12.0000
hhhh	chr3:48664457-48664779(-)$1	322	48	52	12.0000
gggg	chr2:130919691-130919978(-)$1	287	28	32	12.0000
nnnn	chr2:240287769-240287998(-)$1	229	33	37	12.0000
ccc$	chr5:139646445-139646721(-)$1	276	9	13	12.0000
b[bb	chr2:171573458-171573682(+)$1	224	83	87	12.0000
dddd	chr12:66359808-66360071(+)$1	263	40	44	12.0000
ddd>	chr7:1193813-1194118(-)$1	305	67	71	12.0000
22ee	chr2:130878538-130878850(-)$1	312	36	40	12.0000
cc!!	chr22:38203104-38203326(+)$1	222	94	98	12.0000
bbdd	chrX:132669805-132670064(-)$1	259	16	20	12.0000
mccc	chr17:61822863-61823137(-)$1	274	132	136	12.0000
))))	chr2:240287317-240287580(-)$1	263	38	42	12.0000
CCNN	chr15:44063545-44063825(+)$1	280	3	7	12.0000
eee[	chr15:44063396-44063644(+)$1	248	152	156	12.0000
D{BB	chr2:240287380-240287638(-)$1	258	35	39	12.0000
ccc]	chr22:33156420-33156693(-)$1	273	65	69	12.0000
eee!	chr20:34633684-34633928(-)$1	244	59	63	12.0000
b[gg	chr4:719377-719698(+)$1	321	13	17	12.0000
CCC{	chr7:100172941-100173218(-)$1	277	62	66	12.0000
ffff	chr6:131201056-131201264(-)$1	208	6	10	12.0000
mmcc	chr6:30711634-30711886(-)$1	252	73	77	12.0000
mmff	chr22:29190656-29190890(-)$1	234	148	152	12.0000
::dd	chr17:80807681-80807927(+)$1	246	72	76	12.0000
EECC	chr1:43392208-43392450(-)$1	242	18	22	12.0000
ggg%	chr13:113760339-113760597(+)$1	258	12	16	12.0000
:::=	chr20:43955681-43955941(-)$1	260	197	201	12.0000
::::	chr19:18390494-18390736(-)$1	242	75	79	12.0000
iiii	chr14:70238524-70238769(+)$1	245	163	167	12.0000
dppp	chr6:142767043-142767431(+)$1	388	43	47	12.0000
eedd	chr6:33171733-33172018(+)$1	285	71	75	12.0000
eooo	chr2:96850973-96851219(-)$1	246	116	120	12.0000
::ee	chr12:46752006-46752278(-)$1	272	188	192	12.0000
yyyy	chr19:42752313-42752542(-)$1	229	131	135	12.0000
$$==	chr5:52781897-52782150(+)$1	253	59	63	12.0000
BBKK	chr1:55530327-55530596(+)$1	269	0	4	12.0000
b"""	chr2:132268146-132268429(+)$1	283	32	36	12.0000
ii55	chr1:145440943-145441153(+)$1	210	129	133	12.0000
::==	chr16:3104146-3104421(-)$1	275	11	15	12.0000
22bb	chr12:46751940-46752206(-)$1	266	116	120	12.0000
gggg	chr22:29196303-29196563(-)$1	260	108	112	12.0000
bb]a	chr16:87740364-87740602(-)$1	238	107	111	12.0000
ff22	chr2:102508245-102508511(+)$1	266	165	169	12.0000
555f	chr20:48808770-48809032(+)$1	262	227	231	12.0000
a]ff	chr2:43453579-43453839(-)$1	260	15	19	12.0000
ffff	chr20:60710058-60710370(+)$1	312	45	49	12.0000
||||	chr14:24114555-24114807(+)$1	252	236	240	12.0000
::==	chr16:3104259-3104499(-)$1	240	21	25	12.0000
::::	chr22:50357488-50357731(+)$1	243	3	7	12.0000
dccc	chr10:74035504-74035776(+)$1	272	181	185	12.0000
]ddd	chr10:120927197-120927446(-)$1	249	236	240	12.0000
ff]e	chr20:30193925-30194175(+)$1	250	33	37	12.0000
^^^^	chr7:6505613-6505898(-)$1	285	46	50	12.0000
dddd	chr2:135206772-135207065(+)$1	293	107	111	12.0000
b"""	chr15:44086061-44086286(+)$1	225	140	144	12.0000
bfff	chr17:8369180-8369479(+)$1	299	17	21	12.0000
hhhh	chr1:43392302-43392551(-)$1	249	33	37	12.0000
eeee	chr13:113380061-113380306(+)$1	245	39	43	12.0000
DDDD	chr10:724285-724583(-)$1	298	223	227	12.0000
fffl	chr1:44088990-44089266(+)$1	276	112	116	12.0000
neee	chr17:48940563-48940813(-)$1	250	119	123	12.0000

#DB
((((	chr6:41757421-41757701(+)$1	1	95	99	12.0000
((((	chr11:61555579-61555850(+)$1	1	44	48	12.0000
)).)	chr5:137088284-137088555(-)$1	1	69	73	12.0000
((((	chr10:7791241-7791488(+)$1	1	102	106	12.0000
..((	chr16:2569993-2570292(+)$1	1	60	64	12.0000
(((.	chr2:220403745-220403984(-)$1	1	20	24	12.0000
....	chr19:56181690-56182014(+)$1	1	104	108	12.0000
(.((	chr21:46282857-46283070(-)$1	1	22	26	12.0000
)..)	chr19:18704233-18704490(-)$1	1	43	47	12.0000
((((	chr12:46752272-46752596(-)$1	1	3	7	12.0000
((((	chr13:111314373-111314609(-)$1	1	206	210	12.0000
...(	chr6:170686094-170686310(+)$1	1	26	30	12.0000
))))	chr17:66526556-66526803(+)$1	1	22	26	12.0000
)).)	chr13:113380513-113380751(+)$1	1	82	86	12.0000
((..	chr14:69847080-69847336(-)$1	1	141	145	12.0000
((..	chrX:131506498-131506847(-)$1	1	56	60	12.0000
))))	chr3:48664457-48664779(-)$1	1	48	52	12.0000
((((	chr2:130919691-130919978(-)$1	1	28	32	12.0000
....	chr2:240287769-240287998(-)$1	1	33	37	12.0000
(((.	chr5:139646445-139646721(-)$1	1	9	13	12.0000
(.((	chr2:171573458-171573682(+)$1	1	83	87	12.0000
))))	chr12:66359808-66360071(+)$1	1	40	44	12.0000
))).	chr7:1193813-1194118(-)$1	1	67	71	12.0000
..))	chr2:130878538-130878850(-)$1	1	36	40	12.0000
((..	chr22:38203104-38203326(+)$1	1	94	98	12.0000
((((	chrX:132669805-132670064(-)$1	1	16	20	12.0000
.)))	chr17:61822863-61823137(-)$1	1	132	136	12.0000
....	chr2:240287317-240287580(-)$1	1	38	42	12.0000
((..	chr15:44063545-44063825(+)$1	1	3	7	12.0000
(((.	chr15:44063396-44063644(+)$1	1	152	156	12.0000
(.((	chr2:240287380-240287638(-)$1	1	35	39	12.0000
))).	chr22:33156420-33156693(-)$1	1	65	69	12.0000
(((.	chr20:34633684-34633928(-)$1	1	59	63	12.0000
(.((	chr4:719377-719698(+)$1	1	13	17	12.0000
(((.	chr7:100172941-100173218(-)$1	1	62	66	12.0000
((((	chr6:131201056-131201264(-)$1	1	6	10	12.0000
..))	chr6:30711634-30711886(-)$1	1	73	77	12.0000
..))	chr22:29190656-29190890(-)$1	1	148	152	12.0000
..((	chr17:80807681-80807927(+)$1	1	72	76	12.0000
((((	chr1:43392208-43392450(-)$1	1	18	22	12.0000
(((.	chr13:113760339-113760597(+)$1	1	12	16	12.0000
...(	chr20:43955681-43955941(-)$1	1	197	201	12.0000
....	chr19:18390494-18390736(-)$1	1	75	79	12.0000
))))	chr14:70238524-70238769(+)$1	1	163	167	12.0000
(...	chr6:142767043-142767431(+)$1	1	43	47	12.0000
))((	chr6:33171733-33172018(+)$1	1	71	75	12.0000
(...	chr2:96850973-96851219(-)$1	1	116	120	12.0000
..((	chr12:46752006-46752278(-)$1	1	188	192	12.0000
....	chr19:42752313-42752542(-)$1	1	131	135	12.0000
..((	chr5:52781897-52782150(+)$1	1	59	63	12.0000
((..	chr1:55530327-55530596(+)$1	1	0	4	12.0000
(...	chr2:132268146-132268429(+)$1	1	32	36	12.0000
))..	chr1:145440943-145441153(+)$1	1	129	133	12.0000
..((	chr16:3104146-3104421(-)$1	1	11	15	12.0000
..))	chr12:46751940-46752206(-)$1	1	116	120	12.0000
))))	chr22:29196303-29196563(-)$1	1	108	112	12.0000
)).)	chr16:87740364-87740602(-)$1	1	107	111	12.0000
))..	chr2:102508245-102508511(+)$1	1	165	169	12.0000
...)	chr20:48808770-48809032(+)$1	1	227	231	12.0000
).))	chr2:43453579-43453839(-)$1	1	15	19	12.0000
((((	chr20:60710058-60710370(+)$1	1	45	49	12.0000
....	chr14:24114555-24114807(+)$1	1	236	240	12.0000
..((	chr16:3104259-3104499(-)$1	1	21	25	12.0000
....	chr22:50357488-50357731(+)$1	1	3	7	12.0000
((((	chr10:74035504-74035776(+)$1	1	181	185	12.0000
.)))	chr10:120927197-120927446(-)$1	1	236	240	12.0000
)).)	chr20:30193925-30194175(+)$1	1	33	37	12.0000
....	chr7:6505613-6505898(-)$1	1	46	50	12.0000
))))	chr2:135206772-135207065(+)$1	1	107	111	12.0000
(...	chr15:44086061-44086286(+)$1	1	140	144	12.0000
((((	chr17:8369180-8369479(+)$1	1	17	21	12.0000
((((	chr1:43392302-43392551(-)$1	1	33	37	12.0000
((((	chr13:113380061-113380306(+)$1	1	39	43	12.0000
))))	chr10:724285-724583(-)$1	1	223	227	12.0000
(((.	chr1:44088990-44089266(+)$1	1	112	116	12.0000
.)))	chr17:48940563-48940813(-)$1	1	119	123	12.0000

#PSSM
C : 0.90	c : 0.09	
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	
U : 0.90	u : 0.09	

#score	912.0000000000002
#seq	76
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_CDS_m3_run1.nuc.txt

#NT
UGUUU	chr6:168314720-168314954(+)$1	234	85	90	15.0000
UGUUU	chr9:97209109-97209320(+)$1	211	47	52	15.0000
UGUUU	chr4:17825289-17825559(+)$1	270	171	176	15.0000
UGUUU	chr5:38945626-38945883(-)$1	257	33	38	15.0000
UGUUU	chr17:28618155-28618398(-)$1	243	236	241	15.0000
uguuu	chr18:12986729-12986968(+)$1	239	19	24	15.0000
UGUUU	chr12:111160076-111160352(-)$1	276	176	181	15.0000
UGUUU	chr3:194174796-194175092(-)$1	296	256	261	15.0000
UGUUU	chr14:54898751-54898991(-)$1	240	39	44	15.0000
UGUUU	chr5:118451930-118452287(+)$1	357	270	275	15.0000
UGUUU	chr10:98286867-98287123(-)$1	256	64	69	15.0000
UGUUU	chr3:182603637-182603888(+)$1	251	5	10	15.0000
UGUUU	chr17:60087728-60087988(-)$1	260	222	227	15.0000
UGUUU	chrX:122757431-122757713(-)$1	282	143	148	15.0000
UGUUU	chr4:122737813-122738092(-)$1	279	142	147	15.0000
UGUUU	chr11:9309880-9310172(-)$1	292	174	179	15.0000
UGUUU	chr2:131904236-131904487(+)$1	251	181	186	15.0000
UGUUU	chr1:54275265-54275518(-)$1	253	52	57	15.0000
UGUUU	chr1:1190466-1190731(-)$1	265	75	80	15.0000
UGUUU	chr17:48828136-48828389(+)$1	253	83	88	15.0000
UGUUU	chr17:46972960-46973227(+)$1	267	132	137	15.0000
UGUUU	chr6:80721438-80721746(+)$1	308	0	5	15.0000
UGUUU	chr1:53692632-53692885(-)$1	253	118	123	15.0000
UGUUU	chr9:86584165-86584394(-)$1	229	181	186	15.0000
uguuu	chr14:23057770-23057990(-)$1	220	193	198	15.0000
UGUUU	chr21:34932069-34932331(+)$1	262	96	101	15.0000
UGUUU	chr14:81686745-81687001(-)$1	256	8	13	15.0000
UGUUU	chrX:13337534-13337781(+)$1	247	133	138	15.0000
UGUUU	chr3:15073859-15074117(+)$1	258	243	248	15.0000
UGUUU	chr11:13734492-13734747(+)$1	255	103	108	15.0000
UGUUU	chr4:95376465-95376730(+)$1	265	132	137	15.0000
UGUUU	chr6:28872139-28872413(-)$1	274	91	96	15.0000
UGUUU	chr6:105733263-105733536(-)$1	273	62	67	15.0000
UGUUU	chr15:85234752-85234975(-)$1	223	84	89	15.0000
UGUUU	chr8:124221598-124221906(+)$1	308	156	161	15.0000
UGUUU	chr2:97405518-97405782(-)$1	264	53	58	15.0000
UGUUU	chr7:6513713-6513933(-)$1	220	7	12	15.0000
UGUUU	chr21:47690225-47690454(-)$1	229	194	199	15.0000
UGUUU	chr5:179249760-179249994(+)$1	234	83	88	15.0000
UGUUU	chr11:34119222-34119473(+)$1	251	221	226	15.0000
UGUUU	chr10:116623294-116623620(+)$1	326	64	69	15.0000
UGUUU	chr3:194140505-194140746(-)$1	241	24	29	15.0000
UGUUU	chr7:883120-883359(+)$1	239	72	77	15.0000
UGUUU	chr7:2583078-2583329(-)$1	251	148	153	15.0000
UGUUU	chr7:6509280-6509486(-)$1	206	80	85	15.0000
UGUUU	chr20:33859535-33859835(-)$1	300	89	94	15.0000
UGUUU	chr5:118469063-118469336(+)$1	273	0	5	15.0000
UGUUU	chr5:68470119-68470351(+)$1	232	176	181	15.0000
UGUUU	chr7:6509213-6509480(-)$1	267	74	79	15.0000
UGUUU	chr20:33645222-33645464(-)$1	242	176	181	15.0000
UGUUU	chr1:53333195-53333443(+)$1	248	190	195	15.0000
UGUUU	chr17:29592254-29592583(+)$1	329	116	121	15.0000
UGUUU	chr2:176042879-176043129(-)$1	250	75	80	15.0000
UGUUU	chr5:176732866-176733086(+)$1	220	22	27	15.0000
UGUUU	chr8:124221551-124221798(+)$1	247	203	208	15.0000
UGUUU	chr2:74383610-74383873(-)$1	263	180	185	15.0000
UGUUU	chr3:14487155-14487400(+)$1	245	99	104	15.0000
UGUUU	chr6:4056556-4056784(+)$1	228	184	189	15.0000
UGUUU	chr19:12776503-12776719(-)$1	216	80	85	15.0000

#otherMatches

#Struct PSSM
::::e	chr16:58577306-58577591(-)$1	285	201	206	15.0000
hhhh$	chr6:168314720-168314954(+)$1	234	85	90	15.0000
CCGGG	chr9:97209109-97209320(+)$1	211	47	52	15.0000
III:f	chr4:17825289-17825559(+)$1	270	171	176	15.0000
c]eee	chr5:38945626-38945883(-)$1	257	33	38	15.0000
JJJJJ	chr17:28618155-28618398(-)$1	243	236	241	15.0000
CC:::	chr18:12986729-12986968(+)$1	239	19	24	15.0000
fffff	chr12:111160076-111160352(-)$1	276	176	181	15.0000
$bbpp	chr3:194174796-194175092(-)$1	296	256	261	15.0000
ooooo	chr14:54898751-54898991(-)$1	240	39	44	15.0000
IIIII	chr5:118451930-118452287(+)$1	357	270	275	15.0000
==qqq	chr10:98286867-98287123(-)$1	256	64	69	15.0000
:eeee	chr3:182603637-182603888(+)$1	251	5	10	15.0000
]eeee	chr17:60087728-60087988(-)$1	260	222	227	15.0000
qeeee	chrX:122757431-122757713(-)$1	282	143	148	15.0000
&&&&&	chr4:122737813-122738092(-)$1	279	142	147	15.0000
rrrrr	chr11:9309880-9310172(-)$1	292	174	179	15.0000
dddd"	chr2:131904236-131904487(+)$1	251	181	186	15.0000
2ffff	chr1:54275265-54275518(-)$1	253	52	57	15.0000
ee[ee	chr1:1190466-1190731(-)$1	265	75	80	15.0000
=====	chr17:48828136-48828389(+)$1	253	83	88	15.0000
HHHHH	chr17:46972960-46973227(+)$1	267	132	137	15.0000
::::f	chr6:80721438-80721746(+)$1	308	0	5	15.0000
sssss	chr1:53692632-53692885(-)$1	253	118	123	15.0000
DDD::	chr9:86584165-86584394(-)$1	229	181	186	15.0000
bbmmm	chr14:23057770-23057990(-)$1	220	193	198	15.0000
EE:::	chr21:34932069-34932331(+)$1	262	96	101	15.0000
:::::	chr14:81686745-81687001(-)$1	256	8	13	15.0000
mdddd	chrX:13337534-13337781(+)$1	247	133	138	15.0000
:::::	chr3:15073859-15074117(+)$1	258	243	248	15.0000
ggggg	chr11:13734492-13734747(+)$1	255	103	108	15.0000
:::::	chr4:95376465-95376730(+)$1	265	132	137	15.0000
EEEKK	chr6:28872139-28872413(-)$1	274	91	96	15.0000
=====	chr6:105733263-105733536(-)$1	273	62	67	15.0000
ooooo	chr15:85234752-85234975(-)$1	223	84	89	15.0000
ssssc	chr8:124221598-124221906(+)$1	308	156	161	15.0000
dddd3	chr2:97405518-97405782(-)$1	264	53	58	15.0000
::ddd	chr7:6513713-6513933(-)$1	220	7	12	15.0000
c7777	chr21:47690225-47690454(-)$1	229	194	199	15.0000
fffff	chr5:179249760-179249994(+)$1	234	83	88	15.0000
neeee	chr11:34119222-34119473(+)$1	251	221	226	15.0000
EEEES	chr10:116623294-116623620(+)$1	326	64	69	15.0000
:iiii	chr3:194140505-194140746(-)$1	241	24	29	15.0000
=====	chr7:883120-883359(+)$1	239	72	77	15.0000
ccppp	chr7:2583078-2583329(-)$1	251	148	153	15.0000
^^^^^	chr7:6509280-6509486(-)$1	206	80	85	15.0000
fssss	chr20:33859535-33859835(-)$1	300	89	94	15.0000
:::::	chr5:118469063-118469336(+)$1	273	0	5	15.0000
JJJJJ	chr5:68470119-68470351(+)$1	232	176	181	15.0000
^^^^^	chr7:6509213-6509480(-)$1	267	74	79	15.0000
ddeee	chr20:33645222-33645464(-)$1	242	176	181	15.0000
=====	chr1:53333195-53333443(+)$1	248	190	195	15.0000
ggggg	chr17:29592254-29592583(+)$1	329	116	121	15.0000
A{HHH	chr2:176042879-176043129(-)$1	250	75	80	15.0000
))))e	chr5:176732866-176733086(+)$1	220	22	27	15.0000
ssssc	chr8:124221551-124221798(+)$1	247	203	208	15.0000
IIIII	chr2:74383610-74383873(-)$1	263	180	185	15.0000
eee22	chr3:14487155-14487400(+)$1	245	99	104	15.0000
ccc==	chr6:4056556-4056784(+)$1	228	184	189	15.0000
HHH:f	chr19:12776503-12776719(-)$1	216	80	85	15.0000

#DB
....(	chr16:58577306-58577591(-)$1	1	201	206	15.0000
((((.	chr6:168314720-168314954(+)$1	1	85	90	15.0000
(((((	chr9:97209109-97209320(+)$1	1	47	52	15.0000
))).(	chr4:17825289-17825559(+)$1	1	171	176	15.0000
).)))	chr5:38945626-38945883(-)$1	1	33	38	15.0000
)))))	chr17:28618155-28618398(-)$1	1	236	241	15.0000
((...	chr18:12986729-12986968(+)$1	1	19	24	15.0000
(((((	chr12:111160076-111160352(-)$1	1	176	181	15.0000
.((..	chr3:194174796-194175092(-)$1	1	256	261	15.0000
.....	chr14:54898751-54898991(-)$1	1	39	44	15.0000
(((((	chr5:118451930-118452287(+)$1	1	270	275	15.0000
((...	chr10:98286867-98287123(-)$1	1	64	69	15.0000
.((((	chr3:182603637-182603888(+)$1	1	5	10	15.0000
.))))	chr17:60087728-60087988(-)$1	1	222	227	15.0000
.))))	chrX:122757431-122757713(-)$1	1	143	148	15.0000
.....	chr4:122737813-122738092(-)$1	1	142	147	15.0000
.....	chr11:9309880-9310172(-)$1	1	174	179	15.0000
((((.	chr2:131904236-131904487(+)$1	1	181	186	15.0000
.))))	chr1:54275265-54275518(-)$1	1	52	57	15.0000
((.((	chr1:1190466-1190731(-)$1	1	75	80	15.0000
)))))	chr17:48828136-48828389(+)$1	1	83	88	15.0000
)))))	chr17:46972960-46973227(+)$1	1	132	137	15.0000
....(	chr6:80721438-80721746(+)$1	1	0	5	15.0000
.....	chr1:53692632-53692885(-)$1	1	118	123	15.0000
)))..	chr9:86584165-86584394(-)$1	1	181	186	15.0000
((...	chr14:23057770-23057990(-)$1	1	193	198	15.0000
((...	chr21:34932069-34932331(+)$1	1	96	101	15.0000
.....	chr14:81686745-81687001(-)$1	1	8	13	15.0000
.))))	chrX:13337534-13337781(+)$1	1	133	138	15.0000
.....	chr3:15073859-15074117(+)$1	1	243	248	15.0000
(((((	chr11:13734492-13734747(+)$1	1	103	108	15.0000
.....	chr4:95376465-95376730(+)$1	1	132	137	15.0000
(((..	chr6:28872139-28872413(-)$1	1	91	96	15.0000
)))))	chr6:105733263-105733536(-)$1	1	62	67	15.0000
.....	chr15:85234752-85234975(-)$1	1	84	89	15.0000
....)	chr8:124221598-124221906(+)$1	1	156	161	15.0000
)))).	chr2:97405518-97405782(-)$1	1	53	58	15.0000
..(((	chr7:6513713-6513933(-)$1	1	7	12	15.0000
)....	chr21:47690225-47690454(-)$1	1	194	199	15.0000
(((((	chr5:179249760-179249994(+)$1	1	83	88	15.0000
.))))	chr11:34119222-34119473(+)$1	1	221	226	15.0000
((((.	chr10:116623294-116623620(+)$1	1	64	69	15.0000
.((((	chr3:194140505-194140746(-)$1	1	24	29	15.0000
(((((	chr7:883120-883359(+)$1	1	72	77	15.0000
((...	chr7:2583078-2583329(-)$1	1	148	153	15.0000
.....	chr7:6509280-6509486(-)$1	1	80	85	15.0000
(....	chr20:33859535-33859835(-)$1	1	89	94	15.0000
.....	chr5:118469063-118469336(+)$1	1	0	5	15.0000
)))))	chr5:68470119-68470351(+)$1	1	176	181	15.0000
.....	chr7:6509213-6509480(-)$1	1	74	79	15.0000
)))))	chr20:33645222-33645464(-)$1	1	176	181	15.0000
(((((	chr1:53333195-53333443(+)$1	1	190	195	15.0000
)))))	chr17:29592254-29592583(+)$1	1	116	121	15.0000
(.(((	chr2:176042879-176043129(-)$1	1	75	80	15.0000
....(	chr5:176732866-176733086(+)$1	1	22	27	15.0000
....)	chr8:124221551-124221798(+)$1	1	203	208	15.0000
)))))	chr2:74383610-74383873(-)$1	1	180	185	15.0000
)))..	chr3:14487155-14487400(+)$1	1	99	104	15.0000
)))))	chr6:4056556-4056784(+)$1	1	184	189	15.0000
(((.(	chr19:12776503-12776719(-)$1	1	80	85	15.0000

#PSSM
U : 0.95	u : 0.05	
G : 0.95	g : 0.05	
U : 0.95	u : 0.05	
U : 0.95	u : 0.05	
U : 0.95	u : 0.05	

#score	900.0000000000005
#seq	60
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_transcript_m2_run2.nuc.txt

#NT
GCUGC	chr19:36213412-36213680(+)$1	268	10	15	11.2658
GCUGA	chr1:201839798-201840078(+)$1	280	225	230	11.3924
GCUGG	chr14:21822593-21822799(-)$1	206	201	206	11.2658
GCUGG	chr22:31822581-31822841(+)$1	260	129	134	11.2658
GCUGU	chr15:50731142-50731466(+)$1	324	134	139	11.0759
GCUGC	chr12:124862682-124862947(-)$1	265	77	82	11.2658
GCUGA	chr20:45877990-45878218(-)$1	228	46	51	11.3924
GCUGC	chr13:113508682-113508931(+)$1	249	45	50	11.2658
GCUGA	chr13:41532870-41533101(-)$1	231	0	5	11.3924
GCUGG	chr8:141710833-141711067(-)$1	234	49	54	11.2658
GCUGG	chr16:30764717-30764992(+)$1	275	15	20	11.2658
GCUGA	chr20:20022988-20023230(-)$1	242	133	138	11.3924
GCUGG	chr8:98703078-98703325(+)$1	247	143	148	11.2658
GCUGC	chr21:37315640-37315950(-)$1	310	219	224	11.2658
GCUGU	chr2:101622435-101622676(+)$1	241	12	17	11.0759
GCUGA	chr16:28845424-28845632(+)$1	208	26	31	11.3924
GCUGU	chr16:70589980-70590220(+)$1	240	80	85	11.0759
GCUGA	chr17:7214666-7214890(+)$1	224	1	6	11.3924
GCUGC	chr10:96352095-96352373(+)$1	278	58	63	11.2658
GCUGG	chr9:116993259-116993512(+)$1	253	192	197	11.2658
GCUGG	chr19:3960904-3961201(-)$1	297	150	155	11.2658
GCUGC	chr19:42407405-42407653(+)$1	248	28	33	11.2658
GCUGA	chr17:47866057-47866307(+)$1	250	1	6	11.3924
GCUGA	chr1:93913686-93913963(+)$1	277	49	54	11.3924
GCUGC	chr9:114133812-114134041(-)$1	229	104	109	11.2658
GCUGA	chr14:64453109-64453436(+)$1	327	27	32	11.3924
GCUGU	chr6:31504290-31504503(-)$1	213	46	51	11.0759
GCUGU	chr2:232326464-232326673(-)$1	209	53	58	11.0759
GCUGC	chr2:130932448-130932673(-)$1	225	50	55	11.2658
GCUGG	chr5:10748147-10748411(-)$1	264	33	38	11.2658
GCUGA	chr20:45849865-45850086(-)$1	221	95	100	11.3924
GCUGU	chr2:96965002-96965254(-)$1	252	158	163	11.0759
GCUGA	chr3:121435559-121435809(-)$1	250	21	26	11.3924
GCUGG	chr2:170460470-170460715(+)$1	245	225	230	11.2658
GCUGA	chr8:38145982-38146282(-)$1	300	44	49	11.3924
GCUGA	chr16:72131476-72131767(+)$1	291	284	289	11.3924
GCUGA	chr18:9522067-9522321(+)$1	254	184	189	11.3924
GCUGG	chr20:47837965-47838211(+)$1	246	34	39	11.2658
GCUGC	chr2:200812915-200813307(-)$1	392	220	225	11.2658
GCUGC	chr3:127842392-127842718(-)$1	326	107	112	11.2658
GCUGG	chr20:44523208-44523435(+)$1	227	37	42	11.2658
GCUGC	chr3:154032729-154032992(-)$1	263	234	239	11.2658
GCUGU	chr20:34317291-34317507(-)$1	216	176	181	11.0759
GCUGG	chr3:156867027-156867273(-)$1	246	14	19	11.2658
GCUGC	chr11:64012304-64012535(-)$1	231	103	108	11.2658
GCUGA	chr7:139086782-139087022(+)$1	240	193	198	11.3924
GCUGU	chr22:31658482-31658800(+)$1	318	136	141	11.0759
GCUGG	chrX:70516751-70516980(+)$1	229	11	16	11.2658
GCUGU	chr9:91929984-91930209(+)$1	225	83	88	11.0759
GCUGG	chr17:79967260-79967487(+)$1	227	164	169	11.2658
GCUGC	chr8:48878840-48879089(+)$1	249	62	67	11.2658
GCUGU	chr10:95360353-95360598(-)$1	245	19	24	11.0759
GCUGU	chr10:115662141-115662455(+)$1	314	57	62	11.0759
GCUGA	chr14:75284867-75285118(+)$1	251	69	74	11.3924
GCUGA	chr9:136674138-136674359(-)$1	221	74	79	11.3924
GCUGA	chr14:20917214-20917523(-)$1	309	187	192	11.3924
GCUGG	chr20:45938721-45938936(-)$1	215	148	153	11.2658
GCUGC	chr9:86592598-86592801(-)$1	203	64	69	11.2658
GCUGC	chr1:93580154-93580420(+)$1	266	8	13	11.2658
GCUGC	chr22:46733675-46733939(+)$1	264	256	261	11.2658
GCUGU	chr1:16632194-16632464(-)$1	270	85	90	11.0759
GCUGA	chr14:105929422-105929697(+)$1	275	112	117	11.3924
GCUGA	chr2:160112695-160112987(-)$1	292	120	125	11.3924
GCUGC	chr6:33162335-33162616(-)$1	281	19	24	11.2658
GCUGU	chr1:19437136-19437396(-)$1	260	183	188	11.0759
GCUGC	chr17:41573473-41573735(+)$1	262	52	57	11.2658
GCUGG	chr22:37891720-37891974(-)$1	254	225	230	11.2658
GCUGC	chr9:139311450-139311719(+)$1	269	29	34	11.2658
GCUGG	chr4:151842249-151842474(-)$1	225	38	43	11.2658
GCUGA	chrX:53409106-53409347(-)$1	241	200	205	11.3924
GCUGA	chr22:43287054-43287276(-)$1	222	54	59	11.3924
GCUGU	chr10:120802006-120802305(-)$1	299	12	17	11.0759
GCUGC	chr12:105600776-105601080(-)$1	304	181	186	11.2658
GCUGG	chr16:68344533-68344792(-)$1	259	172	177	11.2658
GCUGU	chr16:67179374-67179631(+)$1	257	17	22	11.0759
GCUGG	chr2:27609855-27610075(-)$1	220	73	78	11.2658
GCUGU	chr6:155579064-155579319(-)$1	255	145	150	11.0759
GCUGU	chr14:24687318-24687521(-)$1	203	19	24	11.0759

#otherMatches

#Struct PSSM
fffff	chr1:26228000-26228262(-)$1	262	9	14	11.2658
!!bb[	chr19:36213412-36213680(+)$1	268	10	15	11.2658
ddddd	chr1:201839798-201840078(+)$1	280	225	230	11.3924
EEEE:	chr14:21822593-21822799(-)$1	206	201	206	11.2658
uuuuu	chr22:31822581-31822841(+)$1	260	129	134	11.2658
[bb!!	chr15:50731142-50731466(+)$1	324	134	139	11.0759
dddde	chr12:124862682-124862947(-)$1	265	77	82	11.2658
ccc44	chr20:45877990-45878218(-)$1	228	46	51	11.3924
eeenn	chr13:113508682-113508931(+)$1	249	45	50	11.2658
::ccc	chr13:41532870-41533101(-)$1	231	0	5	11.3924
a!!dd	chr8:141710833-141711067(-)$1	234	49	54	11.2658
eeell	chr16:30764717-30764992(+)$1	275	15	20	11.2658
44a]h	chr20:20022988-20023230(-)$1	242	133	138	11.3924
iii]c	chr8:98703078-98703325(+)$1	247	143	148	11.2658
wwwww	chr21:37315640-37315950(-)$1	310	219	224	11.2658
c::::	chr2:101622435-101622676(+)$1	241	12	17	11.0759
BBBMM	chr16:28845424-28845632(+)$1	208	26	31	11.3924
"ffff	chr16:70589980-70590220(+)$1	240	80	85	11.0759
dddd[	chr17:7214666-7214890(+)$1	224	1	6	11.3924
{EEEE	chr10:96352095-96352373(+)$1	278	58	63	11.2658
:ffff	chr9:116993259-116993512(+)$1	253	192	197	11.2658
mdddd	chr19:3960904-3961201(-)$1	297	150	155	11.2658
!eeee	chr19:42407405-42407653(+)$1	248	28	33	11.2658
EEEE{	chr17:47866057-47866307(+)$1	250	1	6	11.3924
b22cc	chr1:93913686-93913963(+)$1	277	49	54	11.3924
c]eee	chr9:114133812-114134041(-)$1	229	104	109	11.2658
eeeee	chr14:64453109-64453436(+)$1	327	27	32	11.3924
!!===	chr6:31504290-31504503(-)$1	213	46	51	11.0759
ggggg	chr2:232326464-232326673(-)$1	209	53	58	11.0759
b!!==	chr2:130932448-130932673(-)$1	225	50	55	11.2658
hh]bb	chr5:10748147-10748411(-)$1	264	33	38	11.2658
dddd]	chr20:45849865-45850086(-)$1	221	95	100	11.3924
nnnnd	chr2:96965002-96965254(-)$1	252	158	163	11.0759
eeepp	chr3:121435559-121435809(-)$1	250	21	26	11.3924
CDDDD	chr2:170460470-170460715(+)$1	245	225	230	11.2658
fff55	chr8:38145982-38146282(-)$1	300	44	49	11.3924
EEE}C	chr16:72131476-72131767(+)$1	291	284	289	11.3924
f::::	chr18:9522067-9522321(+)$1	254	184	189	11.3924
ooeee	chr20:47837965-47838211(+)$1	246	34	39	11.2658
ccppp	chr2:200812915-200813307(-)$1	392	220	225	11.2658
ee[a[	chr3:127842392-127842718(-)$1	326	107	112	11.2658
HHHHH	chr20:44523208-44523435(+)$1	227	37	42	11.2658
dddd[	chr3:154032729-154032992(-)$1	263	234	239	11.2658
GGGGG	chr20:34317291-34317507(-)$1	216	176	181	11.0759
=====	chr3:156867027-156867273(-)$1	246	14	19	11.2658
gccc!	chr11:64012304-64012535(-)$1	231	103	108	11.2658
eeeeo	chr7:139086782-139087022(+)$1	240	193	198	11.3924
2bbhh	chr22:31658482-31658800(+)$1	318	136	141	11.0759
ttttt	chrX:70516751-70516980(+)$1	229	11	16	11.2658
bbiii	chr9:91929984-91930209(+)$1	225	83	88	11.0759
AYYEE	chr17:79967260-79967487(+)$1	227	164	169	11.2658
cceee	chr8:48878840-48879089(+)$1	249	62	67	11.2658
EE:::	chr10:95360353-95360598(-)$1	245	19	24	11.0759
mmmbb	chr10:115662141-115662455(+)$1	314	57	62	11.0759
g]ccc	chr14:75284867-75285118(+)$1	251	69	74	11.3924
ccc22	chr9:136674138-136674359(-)$1	221	74	79	11.3924
bb]cc	chr14:20917214-20917523(-)$1	309	187	192	11.3924
CCCFF	chr20:45938721-45938936(-)$1	215	148	153	11.2658
gccc]	chr9:86592598-86592801(-)$1	203	64	69	11.2658
DD{CC	chr1:93580154-93580420(+)$1	266	8	13	11.2658
dddd:	chr22:46733675-46733939(+)$1	264	256	261	11.2658
cc::g	chr1:16632194-16632464(-)$1	270	85	90	11.0759
c[ccc	chr14:105929422-105929697(+)$1	275	112	117	11.3924
!dddd	chr2:160112695-160112987(-)$1	292	120	125	11.3924
ccmmm	chr6:33162335-33162616(-)$1	281	19	24	11.2658
eeeee	chr1:19437136-19437396(-)$1	260	183	188	11.0759
eeeeE	chr17:41573473-41573735(+)$1	262	52	57	11.2658
ldddd	chr22:37891720-37891974(-)$1	254	225	230	11.2658
fffff	chr9:139311450-139311719(+)$1	269	29	34	11.2658
[====	chr4:151842249-151842474(-)$1	225	38	43	11.2658
DDD::	chrX:53409106-53409347(-)$1	241	200	205	11.3924
cclll	chr22:43287054-43287276(-)$1	222	54	59	11.3924
ccc[a	chr10:120802006-120802305(-)$1	299	12	17	11.0759
JJJJJ	chr12:105600776-105601080(-)$1	304	181	186	11.2658
dddd"	chr16:68344533-68344792(-)$1	259	172	177	11.2658
eefff	chr16:67179374-67179631(+)$1	257	17	22	11.0759
dd:ff	chr2:27609855-27610075(-)$1	220	73	78	11.2658
eeee!	chr6:155579064-155579319(-)$1	255	145	150	11.0759
CCCFF	chr14:24687318-24687521(-)$1	203	19	24	11.0759

#DB
(((((	chr1:26228000-26228262(-)$1	1	9	14	11.2658
..((.	chr19:36213412-36213680(+)$1	1	10	15	11.2658
(((((	chr1:201839798-201840078(+)$1	1	225	230	11.3924
)))).	chr14:21822593-21822799(-)$1	1	201	206	11.2658
.....	chr22:31822581-31822841(+)$1	1	129	134	11.2658
.((..	chr15:50731142-50731466(+)$1	1	134	139	11.0759
))))(	chr12:124862682-124862947(-)$1	1	77	82	11.2658
)))..	chr20:45877990-45878218(-)$1	1	46	51	11.3924
(((..	chr13:113508682-113508931(+)$1	1	45	50	11.2658
..(((	chr13:41532870-41533101(-)$1	1	0	5	11.3924
(..((	chr8:141710833-141711067(-)$1	1	49	54	11.2658
(((..	chr16:30764717-30764992(+)$1	1	15	20	11.2658
..).)	chr20:20022988-20023230(-)$1	1	133	138	11.3924
))).)	chr8:98703078-98703325(+)$1	1	143	148	11.2658
.....	chr21:37315640-37315950(-)$1	1	219	224	11.2658
)....	chr2:101622435-101622676(+)$1	1	12	17	11.0759
(((..	chr16:28845424-28845632(+)$1	1	26	31	11.3924
.((((	chr16:70589980-70590220(+)$1	1	80	85	11.0759
((((.	chr17:7214666-7214890(+)$1	1	1	6	11.3924
.((((	chr10:96352095-96352373(+)$1	1	58	63	11.2658
.((((	chr9:116993259-116993512(+)$1	1	192	197	11.2658
.))))	chr19:3960904-3961201(-)$1	1	150	155	11.2658
.((((	chr19:42407405-42407653(+)$1	1	28	33	11.2658
((((.	chr17:47866057-47866307(+)$1	1	1	6	11.3924
)..))	chr1:93913686-93913963(+)$1	1	49	54	11.3924
).)))	chr9:114133812-114134041(-)$1	1	104	109	11.2658
(((((	chr14:64453109-64453436(+)$1	1	27	32	11.3924
..(((	chr6:31504290-31504503(-)$1	1	46	51	11.0759
(((((	chr2:232326464-232326673(-)$1	1	53	58	11.0759
(..((	chr2:130932448-130932673(-)$1	1	50	55	11.2658
)).))	chr5:10748147-10748411(-)$1	1	33	38	11.2658
)))).	chr20:45849865-45850086(-)$1	1	95	100	11.3924
....)	chr2:96965002-96965254(-)$1	1	158	163	11.0759
(((..	chr3:121435559-121435809(-)$1	1	21	26	11.3924
)))))	chr2:170460470-170460715(+)$1	1	225	230	11.2658
)))..	chr8:38145982-38146282(-)$1	1	44	49	11.3924
))).)	chr16:72131476-72131767(+)$1	1	284	289	11.3924
)....	chr18:9522067-9522321(+)$1	1	184	189	11.3924
..)))	chr20:47837965-47838211(+)$1	1	34	39	11.2658
((...	chr2:200812915-200813307(-)$1	1	220	225	11.2658
((.(.	chr3:127842392-127842718(-)$1	1	107	112	11.2658
(((((	chr20:44523208-44523435(+)$1	1	37	42	11.2658
((((.	chr3:154032729-154032992(-)$1	1	234	239	11.2658
)))))	chr20:34317291-34317507(-)$1	1	176	181	11.0759
(((((	chr3:156867027-156867273(-)$1	1	14	19	11.2658
((((.	chr11:64012304-64012535(-)$1	1	103	108	11.2658
((((.	chr7:139086782-139087022(+)$1	1	193	198	11.3924
.))))	chr22:31658482-31658800(+)$1	1	136	141	11.0759
.....	chrX:70516751-70516980(+)$1	1	11	16	11.2658
)))))	chr9:91929984-91930209(+)$1	1	83	88	11.0759
)..))	chr17:79967260-79967487(+)$1	1	164	169	11.2658
))(((	chr8:48878840-48879089(+)$1	1	62	67	11.2658
((...	chr10:95360353-95360598(-)$1	1	19	24	11.0759
...))	chr10:115662141-115662455(+)$1	1	57	62	11.0759
).)))	chr14:75284867-75285118(+)$1	1	69	74	11.3924
)))..	chr9:136674138-136674359(-)$1	1	74	79	11.3924
)).))	chr14:20917214-20917523(-)$1	1	187	192	11.3924
)))))	chr20:45938721-45938936(-)$1	1	148	153	11.2658
)))).	chr9:86592598-86592801(-)$1	1	64	69	11.2658
((.((	chr1:93580154-93580420(+)$1	1	8	13	11.2658
)))).	chr22:46733675-46733939(+)$1	1	256	261	11.2658
))..(	chr1:16632194-16632464(-)$1	1	85	90	11.0759
(.(((	chr14:105929422-105929697(+)$1	1	112	117	11.3924
.((((	chr2:160112695-160112987(-)$1	1	120	125	11.3924
((...	chr6:33162335-33162616(-)$1	1	19	24	11.2658
)))))	chr1:19437136-19437396(-)$1	1	183	188	11.0759
))))(	chr17:41573473-41573735(+)$1	1	52	57	11.2658
.))))	chr22:37891720-37891974(-)$1	1	225	230	11.2658
)))))	chr9:139311450-139311719(+)$1	1	29	34	11.2658
.((((	chr4:151842249-151842474(-)$1	1	38	43	11.2658
)))..	chrX:53409106-53409347(-)$1	1	200	205	11.3924
((...	chr22:43287054-43287276(-)$1	1	54	59	11.3924
(((.(	chr10:120802006-120802305(-)$1	1	12	17	11.0759
(((((	chr12:105600776-105601080(-)$1	1	181	186	11.2658
((((.	chr16:68344533-68344792(-)$1	1	172	177	11.2658
(((((	chr16:67179374-67179631(+)$1	1	17	22	11.0759
)).((	chr2:27609855-27610075(-)$1	1	73	78	11.2658
((((.	chr6:155579064-155579319(-)$1	1	145	150	11.0759
(((((	chr14:24687318-24687521(-)$1	1	19	24	11.0759

#PSSM
G : 0.98	g : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
A : 0.27	C : 0.25	G : 0.24	U : 0.21	g : 0.01	

#score	889.5569620253145
#seq	79
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_UTR_m2_run2.nuc.txt

#NT
UGAUUCUG	chr3:50098912-50099160(+)$1	248	4	12	10.1111
UCCGGCUG	chr4:83812052-83812313(-)$1	261	48	56	9.2777
UGAAUCUG	chr1:25570455-25570717(-)$1	262	180	188	9.1388
UGAUGUUG	chr12:132195918-132196167(+)$1	249	131	139	10.9444
UGAGGAUG	chr5:180664426-180664677(-)$1	251	200	208	12.1944
UGACGGUG	chr1:11083311-11083571(+)$1	260	70	78	9.8333
AGAUGCUG	chr17:80441576-80441870(+)$1	294	58	66	12.0555
AGAUGCUG	chr17:30697064-30697294(+)$1	230	91	99	12.0555
UGAAGAUG	chr5:86690674-86690930(-)$1	256	27	35	9.9722
GGCGGCUG	chr12:125398953-125399187(-)$1	234	206	214	9.4166
UGUGGGUG	chr7:42974664-42974963(+)$1	299	87	95	9.2777
UGAUGCUU	chr2:61753369-61753629(-)$1	260	17	25	9.8333
UGUAGCUG	chr12:54678034-54678282(+)$1	248	133	141	10.3888
UGUUGCUG	chr17:74730954-74731215(-)$1	261	152	160	11.3611
UAAUGCUG	chr11:85372497-85372753(-)$1	256	35	43	11.9166
AAAGGCUG	chr12:9907049-9907258(-)$1	209	164	172	10.6666
AAAGGCUG	chr12:9907008-9907249(-)$1	241	155	163	10.6666
UCAGGCUG	chr11:71719548-71719813(-)$1	265	132	140	12.7500
UUAGGCUG	chr7:26230497-26230748(-)$1	251	147	155	12.6111
CAAGGCUG	chr1:1019491-1019808(-)$1	317	41	49	10.2500
UGAAGCUG	chr11:61732663-61732914(-)$1	251	24	32	13.5833
UGAGGGUG	chr16:4871188-4871446(-)$1	258	109	117	12.4722
UGAGGUUG	chr6:31937123-31937379(+)$1	256	43	51	12.1944
UGGGGCUG	chr11:8706368-8706608(+)$1	240	37	45	12.4722
CAAGGCUG	chr14:21462988-21463249(+)$1	261	14	22	10.2500
GCAGGCUG	chr5:179050393-179050675(-)$1	282	150	158	9.8333
ugauggug	chr14:21731296-21731540(-)$1	244	177	185	11.2222
AGGGGCUG	chr16:28847368-28847618(+)$1	250	171	179	9.9722
UAAGGCUG	chr17:39846373-39846627(+)$1	254	161	169	13.1666
GGGGGCUG	chr16:2014642-2014875(-)$1	233	189	197	9.5555
UGAGGCUG	chr3:50137412-50137683(+)$1	271	48	56	15.8055
UGAGGCUG	chr16:720283-720560(+)$1	277	149	157	15.8055
CGAGGCUG	chr19:51307649-51307908(-)$1	259	144	152	12.8888
UGUUGCUG	chr6:31509554-31509798(-)$1	244	38	46	11.3611
UUAUGCUG	chr10:64937295-64937547(-)$1	252	25	33	11.3611

#otherMatches

#Struct PSSM
FFFFEEEE	chr17:30697028-30697264(+)$1	236	127	135	12.0555
[a[hhhhh	chr3:50098912-50099160(+)$1	248	4	12	10.1111
::::GGGG	chr4:83812052-83812313(-)$1	261	48	56	9.2777
ccc!!ccc	chr1:25570455-25570717(-)$1	262	180	188	9.1388
cc!!ccce	chr12:132195918-132196167(+)$1	249	131	139	10.9444
gggggmmm	chr5:180664426-180664677(-)$1	251	200	208	12.1944
lccchhhh	chr1:11083311-11083571(+)$1	260	70	78	9.8333
eee[eeee	chr17:80441576-80441870(+)$1	294	58	66	12.0555
lhhhhhhh	chr17:30697064-30697294(+)$1	230	91	99	12.0555
ccc[dddd	chr5:86690674-86690930(-)$1	256	27	35	9.9722
obbFFFFF	chr12:125398953-125399187(-)$1	234	206	214	9.4166
=======3	chr7:42974664-42974963(+)$1	299	87	95	9.2777
d:GGGGGG	chr2:61753369-61753629(-)$1	260	17	25	9.8333
ddd[bbqq	chr12:54678034-54678282(+)$1	248	133	141	10.3888
~FFFFFF~	chr17:74730954-74731215(-)$1	261	152	160	11.3611
cc[dddd!	chr11:85372497-85372753(-)$1	256	35	43	11.9166
eeeecccg	chr12:9907049-9907258(-)$1	209	164	172	10.6666
eeeecccg	chr12:9907008-9907249(-)$1	241	155	163	10.6666
hh!!dddd	chr11:71719548-71719813(-)$1	265	132	140	12.7500
qqqa]ddd	chr7:26230497-26230748(-)$1	251	147	155	12.6111
:::fffff	chr1:1019491-1019808(-)$1	317	41	49	10.2500
hhhhh&&&	chr11:61732663-61732914(-)$1	251	24	32	13.5833
i4444eee	chr16:4871188-4871446(-)$1	258	109	117	12.4722
c[arrrrr	chr6:31937123-31937379(+)$1	256	43	51	12.1944
HHHHH:cc	chr11:8706368-8706608(+)$1	240	37	45	12.4722
"""bbmmm	chr14:21462988-21463249(+)$1	261	14	22	10.2500
iiiiiiib	chr5:179050393-179050675(-)$1	282	150	158	9.8333
========	chr14:21731296-21731540(-)$1	244	177	185	11.2222
ff333bb]	chr16:28847368-28847618(+)$1	250	171	179	9.9722
FYYGGGGG	chr17:39846373-39846627(+)$1	254	161	169	13.1666
ffffff::	chr16:2014642-2014875(-)$1	233	189	197	9.5555
:dddd!!d	chr3:50137412-50137683(+)$1	271	48	56	15.8055
fffff[ff	chr16:720283-720560(+)$1	277	149	157	15.8055
F::fffff	chr19:51307649-51307908(-)$1	259	144	152	12.8888
ccc[bbmm	chr6:31509554-31509798(-)$1	244	38	46	11.3611
mmeeeeee	chr10:64937295-64937547(-)$1	252	25	33	11.3611

#DB
))))))))	chr17:30697028-30697264(+)$1	1	127	135	12.0555
.(.(((((	chr3:50098912-50099160(+)$1	1	4	12	10.1111
....))))	chr4:83812052-83812313(-)$1	1	48	56	9.2777
(((..(((	chr1:25570455-25570717(-)$1	1	180	188	9.1388
((..((((	chr12:132195918-132196167(+)$1	1	131	139	10.9444
(((((...	chr5:180664426-180664677(-)$1	1	200	208	12.1944
.)))((((	chr1:11083311-11083571(+)$1	1	70	78	9.8333
(((.((((	chr17:80441576-80441870(+)$1	1	58	66	12.0555
.)))))))	chr17:30697064-30697294(+)$1	1	91	99	12.0555
(((.((((	chr5:86690674-86690930(-)$1	1	27	35	9.9722
.)))))))	chr12:125398953-125399187(-)$1	1	206	214	9.4166
))))))).	chr7:42974664-42974963(+)$1	1	87	95	9.2777
).((((((	chr2:61753369-61753629(-)$1	1	17	25	9.8333
(((.((..	chr12:54678034-54678282(+)$1	1	133	141	10.3888
.)))))).	chr17:74730954-74731215(-)$1	1	152	160	11.3611
((.((((.	chr11:85372497-85372753(-)$1	1	35	43	11.9166
)))))))(	chr12:9907049-9907258(-)$1	1	164	172	10.6666
)))))))(	chr12:9907008-9907249(-)$1	1	155	163	10.6666
((..((((	chr11:71719548-71719813(-)$1	1	132	140	12.7500
...).)))	chr7:26230497-26230748(-)$1	1	147	155	12.6111
...(((((	chr1:1019491-1019808(-)$1	1	41	49	10.2500
(((((...	chr11:61732663-61732914(-)$1	1	24	32	13.5833
)....)))	chr16:4871188-4871446(-)$1	1	109	117	12.4722
(.(.....	chr6:31937123-31937379(+)$1	1	43	51	12.1944
(((((.((	chr11:8706368-8706608(+)$1	1	37	45	12.4722
...((...	chr14:21462988-21463249(+)$1	1	14	22	10.2500
((((((((	chr5:179050393-179050675(-)$1	1	150	158	9.8333
))))))))	chr14:21731296-21731540(-)$1	1	177	185	11.2222
))...)).	chr16:28847368-28847618(+)$1	1	171	179	9.9722
)..)))))	chr17:39846373-39846627(+)$1	1	161	169	13.1666
))))))..	chr16:2014642-2014875(-)$1	1	189	197	9.5555
.((((..(	chr3:50137412-50137683(+)$1	1	48	56	15.8055
(((((.((	chr16:720283-720560(+)$1	1	149	157	15.8055
(..(((((	chr19:51307649-51307908(-)$1	1	144	152	12.8888
(((.((..	chr6:31509554-31509798(-)$1	1	38	46	11.3611
..)))))(	chr10:64937295-64937547(-)$1	1	25	33	11.3611

#PSSM
U : 0.63	A : 0.16	G : 0.08	C : 0.08	u : 0.02	
G : 0.66	A : 0.16	C : 0.08	U : 0.05	g : 0.02	
A : 0.72	U : 0.11	G : 0.08	C : 0.05	a : 0.02	
G : 0.55	U : 0.27	A : 0.11	C : 0.02	u : 0.02	
G : 0.91	U : 0.05	g : 0.02	
C : 0.77	G : 0.08	U : 0.05	A : 0.05	g : 0.02	
U : 0.97	u : 0.02	
G : 0.94	U : 0.02	g : 0.02	

#score	408.7222222222224
#seq	36
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_CDS_m3_run1.nuc.txt

#NT
GGUGGAGCGGCAGGCUGUCCCCCAGGCCAACCACACAGAGUCCUGUCACGAAUGUGGCCGGGUGGGACCCGGACAUACGAGAGAUUGUCCUCAUCGUGGCCAUGAUGACAUUGUCAACUUCGAGAGGCAGGAGCAGGAGGGAGAGCAGUACCGUUCCCAGAGGGACCCACUGGAGGGCAAGCGGGACCGGAGCAAGGCCAGGUCUCCGUACUCGCCAGCCGAGGAGGAUGCCUUGUUUAUGGAUUUACCCACUGGCCCAAGAGGCCAGCAGGCACAGCCCCAACGGGCAGAGAAGAAUGGAAUGCUGCCUGCCUCAUAUGGCC	chr11:16847789-16848181(-)$1	392	56	379	381.5000

#otherMatches

#Struct PSSM
gggg"""ccc[cccnnnnncccccc]gggggggEEEEE:CCCKKDDDDMMMMGGGGGGG{AHHHHHHHH{BBeeeeennnnneeeeebb[eeeeemmmmeeeeebb::BB}HHHHHHHH:hhhhhhhh[ccccccmmmmccc]ccc333hhhhhhhheeeeellleeeee:A}GGGGGGGDDDDYYCCC:::dddd[ffffffnnnnnffffff]ddddEEEEEccc[ffffffeeeee[cccccc$$$$$ccc!!eeeeesssssssssseeeee22ccc4444ccc7777777ccc]eeeee]ffffff]ccc:ddddlll	chr4:3317836-3318185(+)$1	349	17	340	381.5000
3bb333eeeeeeeeeeeeeeebb[eeeee$$$$$ddddmmmmdddd88888888eeeee]bb]eeeee::eeeee!!ammmma22eeeeeBB{BB{CCCEEEEE:ddddllldddd:ddddqqqqqqqqdddd:::DDDD{BB{FFFFFFFFFFFFdddd[bblllbb]dddd::ccc!!eeeee!!eeeeeaqqqqqqqqa]eeeee22eeeee22cccbb[ddddllldddd]bb::cccoooooocccffffffnnnnnffffff::::::::ddddmmmmdddd::::::FFFFFFYYFFFFFFBB}DDDD}EEEEE}C	chr11:16847789-16848181(-)$1	392	56	379	381.5000

#DB
((((...(((.(((.....)))))).)))))))(((((.(((..((((....(((((((.(((((((((.(((((((.....)))))((.(((((....)))))))..)).)))))))).((((((((.((((((....))).)))...))))))))(((((...))))).).)))))))))))..)))...((((.((((((.....)))))).)))))))))(((.(((((((((((.((((((.....(((..(((((..........)))))..)))....))).......))).))))).)))))).))).((((...	chr4:3317836-3318185(+)$1	1	17	340	381.5000
.))...))))))))))(((((((.(((((.....((((....))))........))))).)).)))))..(((((..(....)..)))))((.((.((((((((.((((...)))).((((........))))...((((.((.((((((((((((((((.((...)).))))..(((..(((((..((((((........).)))))..)))))..)))((.((((...)))).))..(((......)))((((((.....))))))........((((....))))......))))))..)))))))).)))).))))).)	chr11:16847789-16848181(-)$1	1	56	379	381.5000

#PSSM
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	

#score	763.0
#seq	2
#width	323
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_CDS_m3_run1.nuc.txt

#NT
GAGG	chr19:5719919-5720189(-)$1	270	167	171	11.9999
GAGG	chr11:71725391-71725661(-)$1	270	29	33	11.9999
GAGG	chr8:94745897-94746124(-)$1	227	6	10	11.9999
GAGG	chr8:94752437-94752733(-)$1	296	51	55	11.9999
GAGG	chr11:62298247-62298515(-)$1	268	50	54	11.9999
GAGG	chr1:16259372-16259624(+)$1	252	140	144	11.9999
GAGG	chr1:2160051-2160335(+)$1	284	4	8	11.9999
GAGG	chr2:3322504-3322743(-)$1	239	181	185	11.9999
GAGG	chr7:128454650-128454952(+)$1	302	137	141	11.9999
GAGG	chr22:50278929-50279202(+)$1	273	223	227	11.9999
GAGG	chr19:16687272-16687527(-)$1	255	71	75	11.9999
GAGG	chr8:94746092-94746349(-)$1	257	108	112	11.9999
GAGG	chr3:9851513-9851805(+)$1	292	72	76	11.9999
GAGG	chr8:94748322-94748567(-)$1	245	20	24	11.9999
GAGG	chr11:62288115-62288367(-)$1	252	111	115	11.9999
GAGG	chr7:100731644-100731898(+)$1	254	59	63	11.9999
GAGG	chr14:102452439-102452736(+)$1	297	154	158	11.9999
GAGG	chr13:108518281-108518545(-)$1	264	40	44	11.9999
GAGG	chr13:108518612-108518877(-)$1	265	31	35	11.9999
GAGG	chr8:94745977-94746239(-)$1	262	73	77	11.9999
GAGG	chr8:144999727-144999997(-)$1	270	29	33	11.9999
GAGG	chr8:94746619-94746836(-)$1	217	19	23	11.9999
GAGG	chr6:7246667-7246947(+)$1	280	69	73	11.9999
GAGG	chr22:23523116-23523381(+)$1	265	55	59	11.9999
GAGG	chr8:144945604-144945819(-)$1	215	86	90	11.9999
GAGG	chr8:94748210-94748473(-)$1	263	16	20	11.9999
GAGG	chr16:31091061-31091337(+)$1	276	4	8	11.9999
GAGG	chr12:72057249-72057553(-)$1	304	32	36	11.9999
GAGG	chr11:62285990-62286266(-)$1	276	122	126	11.9999
GAGG	chr19:14268986-14269284(+)$1	298	74	78	11.9999
GAGG	chr19:1978149-1978406(+)$1	257	43	47	11.9999
GAGG	chr11:71724050-71724311(-)$1	261	107	111	11.9999
GAGG	chr16:89348145-89348365(-)$1	220	167	171	11.9999
GAGG	chr9:138379410-138379668(+)$1	258	98	102	11.9999
GAGG	chr10:71144113-71144334(+)$1	221	5	9	11.9999
GAGG	chr19:5587775-5588032(-)$1	257	78	82	11.9999
GAGG	chr9:134350850-134351119(+)$1	269	20	24	11.9999
GAGG	chr6:30680698-30680991(-)$1	293	2	6	11.9999
GAGG	chr17:17071004-17071283(+)$1	279	75	79	11.9999
GAGG	chr7:1887139-1887409(-)$1	270	80	84	11.9999
GAGG	chr11:62285137-62285373(-)$1	236	187	191	11.9999
GAGG	chr16:89348880-89349126(-)$1	246	35	39	11.9999
GAGG	chr4:13602644-13602931(-)$1	287	0	4	11.9999
GAGG	chr21:46918285-46918596(+)$1	311	143	147	11.9999
GAGG	chr9:138379053-138379289(+)$1	236	19	23	11.9999
GAGG	chr7:150784074-150784305(+)$1	231	33	37	11.9999
GAGG	chr22:21800177-21800439(+)$1	262	96	100	11.9999
GAGG	chr5:5462270-5462564(+)$1	294	211	215	11.9999
GAGG	chr8:37729093-37729397(-)$1	304	104	108	11.9999
GAGG	chr11:62290645-62290890(-)$1	245	111	115	11.9999
gagg	chr1:27023005-27023284(+)$1	279	0	4	11.9999
GAGG	chr22:21799745-21800020(+)$1	275	108	112	11.9999
GAGG	chr1:16258601-16258918(+)$1	317	20	24	11.9999
GAGG	chr11:62291291-62291516(-)$1	225	143	147	11.9999
GAGG	chr22:50277366-50277658(+)$1	292	19	23	11.9999
GAGG	chr8:144946858-144947100(-)$1	242	96	100	11.9999
GAGG	chr1:16256749-16256981(+)$1	232	114	118	11.9999
GAGG	chr11:65547088-65547338(-)$1	250	59	63	11.9999
GAGG	chr8:144999472-144999816(-)$1	344	7	11	11.9999
gagg	chr22:50017017-50017273(-)$1	256	135	139	11.9999
GAGG	chr8:144940499-144940780(-)$1	281	19	23	11.9999
gagg	chr16:89788065-89788322(+)$1	257	102	106	11.9999
GAGG	chr8:144941591-144941886(-)$1	295	16	20	11.9999
GAGG	chr1:16258117-16258367(+)$1	250	33	37	11.9999
GAGG	chr10:71129262-71129481(+)$1	219	1	5	11.9999
GAGG	chr11:62285336-62285605(-)$1	269	146	150	11.9999
gagg	chr13:108518837-108519094(-)$1	257	1	5	11.9999
GAGG	chr11:62298721-62298966(-)$1	245	117	121	11.9999
GAGG	chr8:94752533-94752819(-)$1	286	137	141	11.9999
GAGG	chr14:105715538-105715822(-)$1	284	12	16	11.9999
GAGG	chr8:144996917-144997168(-)$1	251	32	36	11.9999
GAGG	chr10:129906003-129906267(-)$1	264	178	182	11.9999
GAGG	chr8:144943327-144943597(-)$1	270	6	10	11.9999
GAGG	chr5:668075-668329(+)$1	254	20	24	11.9999
GAGG	chr19:5719804-5720060(-)$1	256	38	42	11.9999
GAGG	chr22:21799977-21800224(+)$1	247	131	135	11.9999
GAGG	chr11:62286126-62286359(-)$1	233	215	219	11.9999
GAGG	chr8:144940371-144940699(-)$1	328	67	71	11.9999
GAGG	chr1:16256263-16256472(+)$1	209	99	103	11.9999

#otherMatches

#Struct PSSM
"eee	chr18:8783559-8783903(+)$1	344	10	14	11.9999
MMMM	chr19:5719919-5720189(-)$1	270	167	171	11.9999
MMMD	chr11:71725391-71725661(-)$1	270	29	33	11.9999
::::	chr8:94745897-94746124(-)$1	227	6	10	11.9999
wwwd	chr8:94752437-94752733(-)$1	296	51	55	11.9999
ggg!	chr11:62298247-62298515(-)$1	268	50	54	11.9999
D}CC	chr1:16259372-16259624(+)$1	252	140	144	11.9999
d"""	chr1:2160051-2160335(+)$1	284	4	8	11.9999
H}BB	chr2:3322504-3322743(-)$1	239	181	185	11.9999
EEEE	chr7:128454650-128454952(+)$1	302	137	141	11.9999
e22g	chr22:50278929-50279202(+)$1	273	223	227	11.9999
eeee	chr19:16687272-16687527(-)$1	255	71	75	11.9999
ddoo	chr8:94746092-94746349(-)$1	257	108	112	11.9999
::::	chr3:9851513-9851805(+)$1	292	72	76	11.9999
:fff	chr8:94748322-94748567(-)$1	245	20	24	11.9999
qqee	chr11:62288115-62288367(-)$1	252	111	115	11.9999
::::	chr7:100731644-100731898(+)$1	254	59	63	11.9999
"""d	chr14:102452439-102452736(+)$1	297	154	158	11.9999
c22b	chr13:108518281-108518545(-)$1	264	40	44	11.9999
HHHH	chr13:108518612-108518877(-)$1	265	31	35	11.9999
8888	chr8:94745977-94746239(-)$1	262	73	77	11.9999
####	chr8:144999727-144999997(-)$1	270	29	33	11.9999
::::	chr8:94746619-94746836(-)$1	217	19	23	11.9999
pppc	chr6:7246667-7246947(+)$1	280	69	73	11.9999
a]gg	chr22:23523116-23523381(+)$1	265	55	59	11.9999
[a[b	chr8:144945604-144945819(-)$1	215	86	90	11.9999
ccff	chr8:94748210-94748473(-)$1	263	16	20	11.9999
:::D	chr16:31091061-31091337(+)$1	276	4	8	11.9999
=!!c	chr12:72057249-72057553(-)$1	304	32	36	11.9999
hhhh	chr11:62285990-62286266(-)$1	276	122	126	11.9999
EEEE	chr19:14268986-14269284(+)$1	298	74	78	11.9999
ffff	chr19:1978149-1978406(+)$1	257	43	47	11.9999
\\\\	chr11:71724050-71724311(-)$1	261	107	111	11.9999
[bbm	chr16:89348145-89348365(-)$1	220	167	171	11.9999
DDDC	chr9:138379410-138379668(+)$1	258	98	102	11.9999
c[cc	chr10:71144113-71144334(+)$1	221	5	9	11.9999
IIII	chr19:5587775-5588032(-)$1	257	78	82	11.9999
MMGG	chr9:134350850-134351119(+)$1	269	20	24	11.9999
:::d	chr6:30680698-30680991(-)$1	293	2	6	11.9999
33dd	chr17:17071004-17071283(+)$1	279	75	79	11.9999
22cc	chr7:1887139-1887409(-)$1	270	80	84	11.9999
iiii	chr11:62285137-62285373(-)$1	236	187	191	11.9999
DDDD	chr16:89348880-89349126(-)$1	246	35	39	11.9999
::::	chr4:13602644-13602931(-)$1	287	0	4	11.9999
ccc[	chr21:46918285-46918596(+)$1	311	143	147	11.9999
bbEE	chr9:138379053-138379289(+)$1	236	19	23	11.9999
cccc	chr7:150784074-150784305(+)$1	231	33	37	11.9999
rrrr	chr22:21800177-21800439(+)$1	262	96	100	11.9999
eeee	chr5:5462270-5462564(+)$1	294	211	215	11.9999
qfff	chr8:37729093-37729397(-)$1	304	104	108	11.9999
bbqq	chr11:62290645-62290890(-)$1	245	111	115	11.9999
:::c	chr1:27023005-27023284(+)$1	279	0	4	11.9999
DDDD	chr22:21799745-21800020(+)$1	275	108	112	11.9999
ccc!	chr1:16258601-16258918(+)$1	317	20	24	11.9999
bbff	chr11:62291291-62291516(-)$1	225	143	147	11.9999
::EE	chr22:50277366-50277658(+)$1	292	19	23	11.9999
PPDD	chr8:144946858-144947100(-)$1	242	96	100	11.9999
ECCC	chr1:16256749-16256981(+)$1	232	114	118	11.9999
cc:g	chr11:65547088-65547338(-)$1	250	59	63	11.9999
ccqq	chr8:144999472-144999816(-)$1	344	7	11	11.9999
2eee	chr22:50017017-50017273(-)$1	256	135	139	11.9999
b[ii	chr8:144940499-144940780(-)$1	281	19	23	11.9999
hhhh	chr16:89788065-89788322(+)$1	257	102	106	11.9999
::::	chr8:144941591-144941886(-)$1	295	16	20	11.9999
====	chr1:16258117-16258367(+)$1	250	33	37	11.9999
:::d	chr10:71129262-71129481(+)$1	219	1	5	11.9999
hhhh	chr11:62285336-62285605(-)$1	269	146	150	11.9999
::::	chr13:108518837-108519094(-)$1	257	1	5	11.9999
[ccc	chr11:62298721-62298966(-)$1	245	117	121	11.9999
eeed	chr8:94752533-94752819(-)$1	286	137	141	11.9999
qccc	chr14:105715538-105715822(-)$1	284	12	16	11.9999
::II	chr8:144996917-144997168(-)$1	251	32	36	11.9999
33dd	chr10:129906003-129906267(-)$1	264	178	182	11.9999
gg[e	chr8:144943327-144943597(-)$1	270	6	10	11.9999
BB{B	chr5:668075-668329(+)$1	254	20	24	11.9999
CKKB	chr19:5719804-5720060(-)$1	256	38	42	11.9999
]ggg	chr22:21799977-21800224(+)$1	247	131	135	11.9999
hhhh	chr11:62286126-62286359(-)$1	233	215	219	11.9999
E{EE	chr8:144940371-144940699(-)$1	328	67	71	11.9999
dddd	chr1:16256263-16256472(+)$1	209	99	103	11.9999

#DB
.(((	chr18:8783559-8783903(+)$1	1	10	14	11.9999
....	chr19:5719919-5720189(-)$1	1	167	171	11.9999
...(	chr11:71725391-71725661(-)$1	1	29	33	11.9999
....	chr8:94745897-94746124(-)$1	1	6	10	11.9999
...)	chr8:94752437-94752733(-)$1	1	51	55	11.9999
(((.	chr11:62298247-62298515(-)$1	1	50	54	11.9999
).))	chr1:16259372-16259624(+)$1	1	140	144	11.9999
(...	chr1:2160051-2160335(+)$1	1	4	8	11.9999
).))	chr2:3322504-3322743(-)$1	1	181	185	11.9999
))))	chr7:128454650-128454952(+)$1	1	137	141	11.9999
)..)	chr22:50278929-50279202(+)$1	1	223	227	11.9999
((((	chr19:16687272-16687527(-)$1	1	71	75	11.9999
((..	chr8:94746092-94746349(-)$1	1	108	112	11.9999
....	chr3:9851513-9851805(+)$1	1	72	76	11.9999
.(((	chr8:94748322-94748567(-)$1	1	20	24	11.9999
..))	chr11:62288115-62288367(-)$1	1	111	115	11.9999
....	chr7:100731644-100731898(+)$1	1	59	63	11.9999
...(	chr14:102452439-102452736(+)$1	1	154	158	11.9999
)..)	chr13:108518281-108518545(-)$1	1	40	44	11.9999
((((	chr13:108518612-108518877(-)$1	1	31	35	11.9999
....	chr8:94745977-94746239(-)$1	1	73	77	11.9999
....	chr8:144999727-144999997(-)$1	1	29	33	11.9999
....	chr8:94746619-94746836(-)$1	1	19	23	11.9999
...)	chr6:7246667-7246947(+)$1	1	69	73	11.9999
).))	chr22:23523116-23523381(+)$1	1	55	59	11.9999
.(.(	chr8:144945604-144945819(-)$1	1	86	90	11.9999
((((	chr8:94748210-94748473(-)$1	1	16	20	11.9999
...(	chr16:31091061-31091337(+)$1	1	4	8	11.9999
(..(	chr12:72057249-72057553(-)$1	1	32	36	11.9999
))))	chr11:62285990-62286266(-)$1	1	122	126	11.9999
))((	chr19:14268986-14269284(+)$1	1	74	78	11.9999
((((	chr19:1978149-1978406(+)$1	1	43	47	11.9999
....	chr11:71724050-71724311(-)$1	1	107	111	11.9999
.((.	chr16:89348145-89348365(-)$1	1	167	171	11.9999
((((	chr9:138379410-138379668(+)$1	1	98	102	11.9999
(.((	chr10:71144113-71144334(+)$1	1	5	9	11.9999
((((	chr19:5587775-5588032(-)$1	1	78	82	11.9999
..((	chr9:134350850-134351119(+)$1	1	20	24	11.9999
...(	chr6:30680698-30680991(-)$1	1	2	6	11.9999
..))	chr17:17071004-17071283(+)$1	1	75	79	11.9999
..))	chr7:1887139-1887409(-)$1	1	80	84	11.9999
))))	chr11:62285137-62285373(-)$1	1	187	191	11.9999
((((	chr16:89348880-89349126(-)$1	1	35	39	11.9999
....	chr4:13602644-13602931(-)$1	1	0	4	11.9999
(((.	chr21:46918285-46918596(+)$1	1	143	147	11.9999
))((	chr9:138379053-138379289(+)$1	1	19	23	11.9999
((((	chr7:150784074-150784305(+)$1	1	33	37	11.9999
....	chr22:21800177-21800439(+)$1	1	96	100	11.9999
))))	chr5:5462270-5462564(+)$1	1	211	215	11.9999
.)))	chr8:37729093-37729397(-)$1	1	104	108	11.9999
((..	chr11:62290645-62290890(-)$1	1	111	115	11.9999
...(	chr1:27023005-27023284(+)$1	1	0	4	11.9999
((((	chr22:21799745-21800020(+)$1	1	108	112	11.9999
(((.	chr1:16258601-16258918(+)$1	1	20	24	11.9999
))((	chr11:62291291-62291516(-)$1	1	143	147	11.9999
..((	chr22:50277366-50277658(+)$1	1	19	23	11.9999
..((	chr8:144946858-144947100(-)$1	1	96	100	11.9999
((((	chr1:16256749-16256981(+)$1	1	114	118	11.9999
)).(	chr11:65547088-65547338(-)$1	1	59	63	11.9999
((..	chr8:144999472-144999816(-)$1	1	7	11	11.9999
.)))	chr22:50017017-50017273(-)$1	1	135	139	11.9999
(.((	chr8:144940499-144940780(-)$1	1	19	23	11.9999
))))	chr16:89788065-89788322(+)$1	1	102	106	11.9999
....	chr8:144941591-144941886(-)$1	1	16	20	11.9999
))))	chr1:16258117-16258367(+)$1	1	33	37	11.9999
...(	chr10:71129262-71129481(+)$1	1	1	5	11.9999
((((	chr11:62285336-62285605(-)$1	1	146	150	11.9999
....	chr13:108518837-108519094(-)$1	1	1	5	11.9999
.(((	chr11:62298721-62298966(-)$1	1	117	121	11.9999
((((	chr8:94752533-94752819(-)$1	1	137	141	11.9999
.)))	chr14:105715538-105715822(-)$1	1	12	16	11.9999
..((	chr8:144996917-144997168(-)$1	1	32	36	11.9999
..))	chr10:129906003-129906267(-)$1	1	178	182	11.9999
((.(	chr8:144943327-144943597(-)$1	1	6	10	11.9999
((.(	chr5:668075-668329(+)$1	1	20	24	11.9999
(..(	chr19:5719804-5720060(-)$1	1	38	42	11.9999
.)))	chr22:21799977-21800224(+)$1	1	131	135	11.9999
))))	chr11:62286126-62286359(-)$1	1	215	219	11.9999
(.((	chr8:144940371-144940699(-)$1	1	67	71	11.9999
((((	chr1:16256263-16256472(+)$1	1	99	103	11.9999

#PSSM
G : 0.94	g : 0.05	
A : 0.94	a : 0.05	
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	

#score	959.9999999999998
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_UTR_m1_run1.nuc.txt

#NT
CCUGGG	chr19:45412375-45412681(+)$1	306	229	235	18.0000
CCUGGG	chr8:142441182-142441415(+)$1	233	144	150	18.0000
CCUGGG	chr19:45853202-45853485(-)$1	283	141	147	18.0000
CCUGGG	chr17:61909617-61909866(-)$1	249	189	195	18.0000
CCUGGG	chr17:61909570-61909817(-)$1	247	140	146	18.0000
CCUGGG	chr19:3490914-3491193(-)$1	279	256	262	18.0000
CCUGGG	chr19:2754682-2754941(-)$1	259	52	58	18.0000
CCUGGG	chr6:41902864-41903138(-)$1	274	238	244	18.0000
CCUGGG	chr19:10800328-10800570(+)$1	242	208	214	18.0000
CCUGGG	chr17:79524154-79524423(-)$1	269	170	176	18.0000
CCUGGG	chr1:22149124-22149375(-)$1	251	64	70	18.0000
CCUGGG	chr9:140476581-140476838(-)$1	257	227	233	18.0000
CCUGGG	chr5:176910490-176910786(-)$1	296	258	264	18.0000
CCUGGG	chr1:11741005-11741281(-)$1	276	30	36	18.0000
CCUGGG	chr3:184052644-184052893(+)$1	249	215	221	18.0000
CCUGGG	chr1:44443549-44443780(+)$1	231	180	186	18.0000
CCUGGG	chr1:153931731-153931989(-)$1	258	99	105	18.0000
CCUGGG	chr8:144898492-144898759(-)$1	267	247	253	18.0000
CCUGGG	chr7:100276491-100276783(+)$1	292	160	166	18.0000
CCUGGG	chr19:9959975-9960327(+)$1	352	63	69	18.0000
CCUGGG	chr10:104240312-104240608(-)$1	296	133	139	18.0000
ccuggg	chr5:177577303-177577556(+)$1	253	168	174	18.0000
CCUGGG	chr19:18280187-18280524(+)$1	337	302	308	18.0000
CCUGGG	chr19:40721230-40721528(+)$1	298	57	63	18.0000
CCUGGG	chr1:156109482-156109768(+)$1	286	156	162	18.0000
CCUGGG	chrX:53221481-53221729(-)$1	248	223	229	18.0000
CCUGGG	chr19:12907735-12907955(-)$1	220	130	136	18.0000
CCUGGG	chr9:139566917-139567168(+)$1	251	116	122	18.0000
CCUGGG	chr1:1228426-1228673(-)$1	247	9	15	18.0000
CCUGGG	chr20:62331059-62331346(-)$1	287	140	146	18.0000
CCUGGG	chr7:45139685-45139961(-)$1	276	223	229	18.0000
CCUGGG	chr16:89663170-89663457(+)$1	287	250	256	18.0000
CCUGGG	chr5:1461574-1461875(-)$1	301	190	196	18.0000
ccuggg	chr21:46189150-46189397(-)$1	247	56	62	18.0000
CCUGGG	chr17:7306875-7307109(-)$1	234	28	34	18.0000
CCUGGG	chr16:30535528-30535773(-)$1	245	142	148	18.0000
CCUGGG	chr7:98993830-98994095(-)$1	265	84	90	18.0000
CCUGGG	chr19:50363433-50363687(+)$1	254	193	199	18.0000
CCUGGG	chr16:1375108-1375385(+)$1	277	118	124	18.0000
CCUGGG	chr19:50060032-50060282(-)$1	250	43	49	18.0000
CCUGGG	chr12:132335591-132335935(+)$1	344	304	310	18.0000
CCUGGG	chr8:27316431-27316764(+)$1	333	157	163	18.0000
CCUGGG	chr8:144694969-144695229(-)$1	260	15	21	18.0000
CCUGGG	chr17:7307218-7307484(-)$1	266	42	48	18.0000
CCUGGG	chr13:27830295-27830536(+)$1	241	153	159	18.0000
CCUGGG	chr16:30003325-30003597(+)$1	272	33	39	18.0000
CCUGGG	chr16:417483-417792(-)$1	309	298	304	18.0000
CCUGGG	chr17:38613521-38613761(+)$1	240	190	196	18.0000

#otherMatches

#Struct PSSM
:ggggg	chr9:140006291-140006551(-)$1	260	173	179	18.0000
BB}EEE	chr19:45412375-45412681(+)$1	306	229	235	18.0000
YYEEEE	chr8:142441182-142441415(+)$1	233	144	150	18.0000
======	chr19:45853202-45853485(-)$1	283	141	147	18.0000
c[cccm	chr17:61909617-61909866(-)$1	249	189	195	18.0000
e!!bb[	chr17:61909570-61909817(-)$1	247	140	146	18.0000
cccnnn	chr19:3490914-3491193(-)$1	279	256	262	18.0000
JJJJJJ	chr19:2754682-2754941(-)$1	259	52	58	18.0000
d::ddd	chr6:41902864-41903138(-)$1	274	238	244	18.0000
c22fff	chr19:10800328-10800570(+)$1	242	208	214	18.0000
KFFFFF	chr17:79524154-79524423(-)$1	269	170	176	18.0000
%%eeee	chr1:22149124-22149375(-)$1	251	64	70	18.0000
JJJFFF	chr9:140476581-140476838(-)$1	257	227	233	18.0000
CCC}EE	chr5:176910490-176910786(-)$1	296	258	264	18.0000
FFF{AF	chr1:11741005-11741281(-)$1	276	30	36	18.0000
CCC}FF	chr3:184052644-184052893(+)$1	249	215	221	18.0000
:::fff	chr1:44443549-44443780(+)$1	231	180	186	18.0000
bhhhhh	chr1:153931731-153931989(-)$1	258	99	105	18.0000
FFFFF}	chr8:144898492-144898759(-)$1	267	247	253	18.0000
======	chr7:100276491-100276783(+)$1	292	160	166	18.0000
eEEEEE	chr19:9959975-9960327(+)$1	352	63	69	18.0000
]bb::=	chr10:104240312-104240608(-)$1	296	133	139	18.0000
mmmmhh	chr5:177577303-177577556(+)$1	253	168	174	18.0000
FFFFFF	chr19:18280187-18280524(+)$1	337	302	308	18.0000
cccddd	chr19:40721230-40721528(+)$1	298	57	63	18.0000
ffff##	chr1:156109482-156109768(+)$1	286	156	162	18.0000
JJJJJJ	chrX:53221481-53221729(-)$1	248	223	229	18.0000
gggggg	chr19:12907735-12907955(-)$1	220	130	136	18.0000
DDDLLL	chr9:139566917-139567168(+)$1	251	116	122	18.0000
fffddd	chr1:1228426-1228673(-)$1	247	9	15	18.0000
BB}FFF	chr20:62331059-62331346(-)$1	287	140	146	18.0000
clllcc	chr7:45139685-45139961(-)$1	276	223	229	18.0000
CCFFFF	chr16:89663170-89663457(+)$1	287	250	256	18.0000
dd[ddd	chr5:1461574-1461875(-)$1	301	190	196	18.0000
ffffff	chr21:46189150-46189397(-)$1	247	56	62	18.0000
FFFFFF	chr17:7306875-7307109(-)$1	234	28	34	18.0000
dddd::	chr16:30535528-30535773(-)$1	245	142	148	18.0000
JJJJJJ	chr7:98993830-98994095(-)$1	265	84	90	18.0000
CCDDDD	chr19:50363433-50363687(+)$1	254	193	199	18.0000
gggggg	chr16:1375108-1375385(+)$1	277	118	124	18.0000
lleeee	chr19:50060032-50060282(-)$1	250	43	49	18.0000
JJJJJJ	chr12:132335591-132335935(+)$1	344	304	310	18.0000
cccggg	chr8:27316431-27316764(+)$1	333	157	163	18.0000
DDDDKK	chr8:144694969-144695229(-)$1	260	15	21	18.0000
ffffff	chr17:7307218-7307484(-)$1	266	42	48	18.0000
gggggc	chr13:27830295-27830536(+)$1	241	153	159	18.0000
HHHHHH	chr16:30003325-30003597(+)$1	272	33	39	18.0000
ffffff	chr16:417483-417792(-)$1	309	298	304	18.0000
mmmbb]	chr17:38613521-38613761(+)$1	240	190	196	18.0000

#DB
.(((((	chr9:140006291-140006551(-)$1	1	173	179	18.0000
)).)))	chr19:45412375-45412681(+)$1	1	229	235	18.0000
..))))	chr8:142441182-142441415(+)$1	1	144	150	18.0000
((((((	chr19:45853202-45853485(-)$1	1	141	147	18.0000
(.(((.	chr17:61909617-61909866(-)$1	1	189	195	18.0000
(..((.	chr17:61909570-61909817(-)$1	1	140	146	18.0000
(((...	chr19:3490914-3491193(-)$1	1	256	262	18.0000
((((((	chr19:2754682-2754941(-)$1	1	52	58	18.0000
)..(((	chr6:41902864-41903138(-)$1	1	238	244	18.0000
)..)))	chr19:10800328-10800570(+)$1	1	208	214	18.0000
.(((((	chr17:79524154-79524423(-)$1	1	170	176	18.0000
..((((	chr1:22149124-22149375(-)$1	1	64	70	18.0000
))))))	chr9:140476581-140476838(-)$1	1	227	233	18.0000
))).))	chr5:176910490-176910786(-)$1	1	258	264	18.0000
(((.((	chr1:11741005-11741281(-)$1	1	30	36	18.0000
))).))	chr3:184052644-184052893(+)$1	1	215	221	18.0000
...(((	chr1:44443549-44443780(+)$1	1	180	186	18.0000
))))))	chr1:153931731-153931989(-)$1	1	99	105	18.0000
))))).	chr8:144898492-144898759(-)$1	1	247	253	18.0000
((((((	chr7:100276491-100276783(+)$1	1	160	166	18.0000
)(((((	chr19:9959975-9960327(+)$1	1	63	69	18.0000
.))..(	chr10:104240312-104240608(-)$1	1	133	139	18.0000
....))	chr5:177577303-177577556(+)$1	1	168	174	18.0000
))))))	chr19:18280187-18280524(+)$1	1	302	308	18.0000
))))))	chr19:40721230-40721528(+)$1	1	57	63	18.0000
((((..	chr1:156109482-156109768(+)$1	1	156	162	18.0000
))))))	chrX:53221481-53221729(-)$1	1	223	229	18.0000
((((((	chr19:12907735-12907955(-)$1	1	130	136	18.0000
(((...	chr9:139566917-139567168(+)$1	1	116	122	18.0000
((((((	chr1:1228426-1228673(-)$1	1	9	15	18.0000
)).)))	chr20:62331059-62331346(-)$1	1	140	146	18.0000
(...))	chr7:45139685-45139961(-)$1	1	223	229	18.0000
))))))	chr16:89663170-89663457(+)$1	1	250	256	18.0000
((.(((	chr5:1461574-1461875(-)$1	1	190	196	18.0000
))))))	chr21:46189150-46189397(-)$1	1	56	62	18.0000
((((((	chr17:7306875-7307109(-)$1	1	28	34	18.0000
))))..	chr16:30535528-30535773(-)$1	1	142	148	18.0000
((((((	chr7:98993830-98994095(-)$1	1	84	90	18.0000
))))))	chr19:50363433-50363687(+)$1	1	193	199	18.0000
((((((	chr16:1375108-1375385(+)$1	1	118	124	18.0000
..))))	chr19:50060032-50060282(-)$1	1	43	49	18.0000
))))))	chr12:132335591-132335935(+)$1	1	304	310	18.0000
))))))	chr8:27316431-27316764(+)$1	1	157	163	18.0000
((((..	chr8:144694969-144695229(-)$1	1	15	21	18.0000
))))))	chr17:7307218-7307484(-)$1	1	42	48	18.0000
((((((	chr13:27830295-27830536(+)$1	1	153	159	18.0000
((((((	chr16:30003325-30003597(+)$1	1	33	39	18.0000
))))))	chr16:417483-417792(-)$1	1	298	304	18.0000
...)).	chr17:38613521-38613761(+)$1	1	190	196	18.0000

#PSSM
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	

#score	882.0000000000003
#seq	49
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_transcript_m3_run2.nuc.txt

#NT
UUUUCCUU	chr17:34942442-34942724(+)$1	282	241	249	15.6071
uuuccuuu	chrX:49131977-49132309(+)$1	332	56	64	15.6071
GUUUCUUU	chr1:165728658-165728916(-)$1	258	42	50	15.5178
uuuuauuu	chr14:53106738-53106999(-)$1	261	93	101	16.0535
UUUGCUUU	chr6:18236634-18236900(-)$1	266	243	251	15.8750
UUUUCUGU	chr1:114939109-114939395(-)$1	286	74	82	15.7857
UUUUCUUA	chr2:105961671-105962032(+)$1	361	255	263	15.4285
uuuuauuu	chr15:44696816-44697083(+)$1	267	75	83	16.0535
UUUUCUUG	chr22:22114767-22115104(-)$1	337	82	90	15.4285
UUUUUUUU	chr9:131456113-131456340(+)$1	227	46	54	16.4107
UUUUUUUU	chr9:134019180-134019428(+)$1	248	19	27	16.4107
UUUUUUUU	chr9:131456088-131456311(+)$1	223	71	79	16.4107
UUGUCUUU	chr16:4909760-4910073(+)$1	313	88	96	15.3392
UUUUCUUU	chr8:128753354-128753617(+)$1	263	45	53	19.8928
uuuGCUUU	chr2:99992795-99993118(+)$1	323	1	9	15.8750
UUUUCUUA	chr5:135518132-135518409(+)$1	277	24	32	15.4285
UGUUCUUU	chr11:94703048-94703361(-)$1	313	90	98	15.3392
UUUUGUUU	chr9:115449463-115449796(-)$1	333	88	96	16.1428
UUUUCUUU	chr6:31857143-31857449(-)$1	306	4	12	19.8928
UUUUUUUU	chr12:46357788-46358045(-)$1	257	7	15	16.4107
UUUUCUUU	chr21:40668423-40668755(-)$1	332	294	302	19.8928
UUUUCUUU	chr2:232325463-232325677(-)$1	214	24	32	19.8928
uuuucugu	chr7:29685517-29685791(-)$1	274	54	62	15.7857
uuaucuuu	chr12:42755656-42756009(+)$1	353	76	84	15.4285
UUUUCUCU	chr1:207968643-207968925(+)$1	282	34	42	15.6071
AUUUCUUU	chr6:99847738-99847991(-)$1	253	8	16	15.5178
UCUUCUUU	chr11:34120412-34120672(+)$1	260	231	239	15.3392
UUUUCUCU	chr22:22024356-22024604(+)$1	248	182	190	15.6071
UUAUCUUU	chrX:123225457-123225745(+)$1	288	238	246	15.4285
UUUUCUUU	chr1:70716026-70716282(+)$1	256	221	229	19.8928
UUUUCUGU	chr5:102538649-102538986(+)$1	337	158	166	15.7857
UUUUUUUU	chr13:31035379-31035665(-)$1	286	188	196	16.4107
UUUUUUUU	chr16:10576051-10576334(+)$1	283	80	88	16.4107
UAUUCUUU	chr12:123075910-123076211(+)$1	301	95	103	15.4285
UUUACUUU	chr12:76449743-76449996(-)$1	253	209	217	15.6964
AUUUCUUU	chr4:38695972-38696271(+)$1	299	262	270	15.5178
UUUUCUUU	chr14:102551166-102551386(-)$1	220	38	46	19.8928
UUUUCCUU	chr17:20783423-20783764(+)$1	341	270	278	15.6071
UUUUCCUU	chr6:147526477-147526759(+)$1	282	208	216	15.6071
UUUUCUGU	chr14:70238175-70238424(+)$1	249	98	106	15.7857
uuugcuuu	chr15:91505355-91505611(+)$1	256	62	70	15.8750
UUUUCAUU	chr8:117861137-117861371(-)$1	234	54	62	15.5178
UUUACUUU	chr5:68473322-68473636(+)$1	314	213	221	15.6964
UUCUCUUU	chr21:33053584-33053894(-)$1	310	57	65	15.3392
UUUUCUUU	chr12:8929189-8929499(+)$1	310	82	90	19.8928
UUUUCUUU	chr13:111545234-111545488(-)$1	254	169	177	19.8928
UUUUCUUG	chr1:155882857-155883124(-)$1	267	61	69	15.4285
UUUUCUUU	chr9:131456821-131457052(+)$1	231	87	95	19.8928
UUUUGUUU	chr21:34930178-34930424(+)$1	246	30	38	16.1428
UUUGCUUU	chr2:178080780-178081027(+)$1	247	87	95	15.8750
UAUUCUUU	chr1:214787036-214787356(+)$1	320	8	16	15.4285
CUUUCUUU	chr3:195776066-195776361(-)$1	295	103	111	15.4285
GUUUCUUU	chr11:129991479-129991802(+)$1	323	18	26	15.5178
UUUUCUUU	chr2:170668310-170668599(+)$1	289	280	288	19.8928
UUUUGUUU	chr2:170668075-170668376(+)$1	301	237	245	16.1428

#otherMatches

#Struct PSSM
fppppppp	chr21:35478150-35478455(+)$1	305	186	194	15.5178
dddggggg	chr17:34942442-34942724(+)$1	282	241	249	15.6071
::::::::	chrX:49131977-49132309(+)$1	332	56	64	15.6071
========	chr1:165728658-165728916(-)$1	258	42	50	15.5178
::::::::	chr14:53106738-53106999(-)$1	261	93	101	16.0535
fffff:::	chr6:18236634-18236900(-)$1	266	243	251	15.8750
::::::::	chr1:114939109-114939395(-)$1	286	74	82	15.7857
ggggggg]	chr2:105961671-105962032(+)$1	361	255	263	15.4285
tttttttt	chr15:44696816-44697083(+)$1	267	75	83	16.0535
CC{BBGGG	chr22:22114767-22115104(-)$1	337	82	90	15.4285
========	chr9:131456113-131456340(+)$1	227	46	54	16.4107
:::::::J	chr9:134019180-134019428(+)$1	248	19	27	16.4107
========	chr9:131456088-131456311(+)$1	223	71	79	16.4107
ggggdddd	chr16:4909760-4910073(+)$1	313	88	96	15.3392
::::FFFF	chr8:128753354-128753617(+)$1	263	45	53	19.8928
:GGGGGGG	chr2:99992795-99993118(+)$1	323	1	9	15.8750
HHHHH{CC	chr5:135518132-135518409(+)$1	277	24	32	15.4285
ccoooooo	chr11:94703048-94703361(-)$1	313	90	98	15.3392
iiii[ccc	chr9:115449463-115449796(-)$1	333	88	96	16.1428
hhhhhhhh	chr6:31857143-31857449(-)$1	306	4	12	19.8928
========	chr12:46357788-46358045(-)$1	257	7	15	16.4107
zzzzzzzz	chr21:40668423-40668755(-)$1	332	294	302	19.8928
JJJJJJJJ	chr2:232325463-232325677(-)$1	214	24	32	19.8928
5555bb22	chr7:29685517-29685791(-)$1	274	54	62	15.7857
eeee::::	chr12:42755656-42756009(+)$1	353	76	84	15.4285
pppfffff	chr1:207968643-207968925(+)$1	282	34	42	15.6071
!bb####g	chr6:99847738-99847991(-)$1	253	8	16	15.5178
eeccc:::	chr11:34120412-34120672(+)$1	260	231	239	15.3392
@GGGGGGG	chr22:22024356-22024604(+)$1	248	182	190	15.6071
vvvvvvvv	chrX:123225457-123225745(+)$1	288	238	246	15.4285
GGGFFFFF	chr1:70716026-70716282(+)$1	256	221	229	19.8928
iiiiiiii	chr5:102538649-102538986(+)$1	337	158	166	15.7857
========	chr13:31035379-31035665(-)$1	286	188	196	16.4107
yyyyyyyy	chr16:10576051-10576334(+)$1	283	80	88	16.4107
C::ggggg	chr12:123075910-123076211(+)$1	301	95	103	15.4285
###=====	chr12:76449743-76449996(-)$1	253	209	217	15.6964
@@@@@@@@	chr4:38695972-38696271(+)$1	299	262	270	15.5178
hhhhhhhh	chr14:102551166-102551386(-)$1	220	38	46	19.8928
e7777777	chr17:20783423-20783764(+)$1	341	270	278	15.6071
ffffmmmm	chr6:147526477-147526759(+)$1	282	208	216	15.6071
0000000e	chr14:70238175-70238424(+)$1	249	98	106	15.7857
HH{DDDDK	chr15:91505355-91505611(+)$1	256	62	70	15.8750
fffff[dd	chr8:117861137-117861371(-)$1	234	54	62	15.5178
::::::::	chr5:68473322-68473636(+)$1	314	213	221	15.6964
hhhhhhhh	chr21:33053584-33053894(-)$1	310	57	65	15.3392
22ccc333	chr12:8929189-8929499(+)$1	310	82	90	19.8928
c]======	chr13:111545234-111545488(-)$1	254	169	177	19.8928
:::::fff	chr1:155882857-155883124(-)$1	267	61	69	15.4285
::::::::	chr9:131456821-131457052(+)$1	231	87	95	19.8928
gggggmmm	chr21:34930178-34930424(+)$1	246	30	38	16.1428
dddd====	chr2:178080780-178081027(+)$1	247	87	95	15.8750
eeeedddd	chr1:214787036-214787356(+)$1	320	8	16	15.4285
b]ccc333	chr3:195776066-195776361(-)$1	295	103	111	15.4285
[a&&&&&&	chr11:129991479-129991802(+)$1	323	18	26	15.5178
JJJJJJJ:	chr2:170668310-170668599(+)$1	289	280	288	19.8928
:DDDDYYF	chr2:170668075-170668376(+)$1	301	237	245	16.1428

#DB
(.......	chr21:35478150-35478455(+)$1	1	186	194	15.5178
))))))))	chr17:34942442-34942724(+)$1	1	241	249	15.6071
........	chrX:49131977-49132309(+)$1	1	56	64	15.6071
((((((((	chr1:165728658-165728916(-)$1	1	42	50	15.5178
........	chr14:53106738-53106999(-)$1	1	93	101	16.0535
)))))...	chr6:18236634-18236900(-)$1	1	243	251	15.8750
........	chr1:114939109-114939395(-)$1	1	74	82	15.7857
))))))).	chr2:105961671-105962032(+)$1	1	255	263	15.4285
........	chr15:44696816-44697083(+)$1	1	75	83	16.0535
((.(((((	chr22:22114767-22115104(-)$1	1	82	90	15.4285
((((((((	chr9:131456113-131456340(+)$1	1	46	54	16.4107
.......(	chr9:134019180-134019428(+)$1	1	19	27	16.4107
((((((((	chr9:131456088-131456311(+)$1	1	71	79	16.4107
))))((((	chr16:4909760-4910073(+)$1	1	88	96	15.3392
....((((	chr8:128753354-128753617(+)$1	1	45	53	19.8928
.(((((((	chr2:99992795-99993118(+)$1	1	1	9	15.8750
(((((.((	chr5:135518132-135518409(+)$1	1	24	32	15.4285
((......	chr11:94703048-94703361(-)$1	1	90	98	15.3392
((((.(((	chr9:115449463-115449796(-)$1	1	88	96	16.1428
((((((((	chr6:31857143-31857449(-)$1	1	4	12	19.8928
((((((((	chr12:46357788-46358045(-)$1	1	7	15	16.4107
........	chr21:40668423-40668755(-)$1	1	294	302	19.8928
((((((((	chr2:232325463-232325677(-)$1	1	24	32	19.8928
....))..	chr7:29685517-29685791(-)$1	1	54	62	15.7857
))))....	chr12:42755656-42756009(+)$1	1	76	84	15.4285
...)))))	chr1:207968643-207968925(+)$1	1	34	42	15.6071
.((....(	chr6:99847738-99847991(-)$1	1	8	16	15.5178
)))))...	chr11:34120412-34120672(+)$1	1	231	239	15.3392
.)))))))	chr22:22024356-22024604(+)$1	1	182	190	15.6071
........	chrX:123225457-123225745(+)$1	1	238	246	15.4285
))))))))	chr1:70716026-70716282(+)$1	1	221	229	19.8928
))))))))	chr5:102538649-102538986(+)$1	1	158	166	15.7857
))))))))	chr13:31035379-31035665(-)$1	1	188	196	16.4107
........	chr16:10576051-10576334(+)$1	1	80	88	16.4107
(..(((((	chr12:123075910-123076211(+)$1	1	95	103	15.4285
...(((((	chr12:76449743-76449996(-)$1	1	209	217	15.6964
........	chr4:38695972-38696271(+)$1	1	262	270	15.5178
((((((((	chr14:102551166-102551386(-)$1	1	38	46	19.8928
).......	chr17:20783423-20783764(+)$1	1	270	278	15.6071
((((....	chr6:147526477-147526759(+)$1	1	208	216	15.6071
.......)	chr14:70238175-70238424(+)$1	1	98	106	15.7857
((.((((.	chr15:91505355-91505611(+)$1	1	62	70	15.8750
(((((.((	chr8:117861137-117861371(-)$1	1	54	62	15.5178
........	chr5:68473322-68473636(+)$1	1	213	221	15.6964
))))))))	chr21:33053584-33053894(-)$1	1	57	65	15.3392
..)))...	chr12:8929189-8929499(+)$1	1	82	90	19.8928
).))))))	chr13:111545234-111545488(-)$1	1	169	177	19.8928
.....(((	chr1:155882857-155883124(-)$1	1	61	69	15.4285
........	chr9:131456821-131457052(+)$1	1	87	95	19.8928
(((((...	chr21:34930178-34930424(+)$1	1	30	38	16.1428
))))))))	chr2:178080780-178081027(+)$1	1	87	95	15.8750
((((((((	chr1:214787036-214787356(+)$1	1	8	16	15.4285
).)))...	chr3:195776066-195776361(-)$1	1	103	111	15.4285
.(......	chr11:129991479-129991802(+)$1	1	18	26	15.5178
))))))).	chr2:170668310-170668599(+)$1	1	280	288	19.8928
.))))..)	chr2:170668075-170668376(+)$1	1	237	245	16.1428

#PSSM
U : 0.78	u : 0.12	G : 0.03	A : 0.03	C : 0.01	
U : 0.80	u : 0.12	A : 0.03	G : 0.01	C : 0.01	
U : 0.82	u : 0.10	G : 0.01	a : 0.01	A : 0.01	C : 0.01	
U : 0.80	u : 0.07	G : 0.05	A : 0.03	c : 0.01	g : 0.01	
C : 0.73	U : 0.10	c : 0.07	G : 0.05	a : 0.03	
U : 0.80	u : 0.10	C : 0.05	A : 0.03	
U : 0.80	u : 0.08	G : 0.05	C : 0.03	g : 0.01	
U : 0.82	u : 0.10	A : 0.03	G : 0.03	

#score	922.9285714285718
#seq	56
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_CDS_m3_run1.nuc.txt

#NT
AAGGAGUUACUU	chr2:145157097-145157406(-)$1	309	154	166	9.0000
GUUCAGUUUCUA	chr2:152319594-152319919(+)$1	325	38	50	10.2500
AUUCAGGAUCUU	chr11:5443360-5443645(-)$1	285	236	248	9.5000
CAUCUGUGUUUC	chr22:19431811-19432082(-)$1	271	76	88	8.6250
AGUCUGAUUCUA	chr2:170493232-170493585(+)$1	353	43	55	8.7500
UAUGAGUUUUUC	chr21:38537785-38538081(+)$1	296	133	145	10.8750
AAUCUGUGCUUC	chr1:197072614-197072896(-)$1	282	49	61	8.6250
AAACAUUUUUCC	chr2:55253744-55254018(-)$1	274	214	226	8.0000
UUUCAGUAUUUC	chr11:5423936-5424208(-)$1	272	99	111	8.7500
AAACUGUUUCUC	chr12:46320921-46321191(-)$1	270	10	22	14.2500
AAUCAGCAUCUG	chr1:203767153-203767404(+)$1	251	197	209	11.7500
AAGCAGCUUCCC	chr10:119043418-119043721(-)$1	303	68	80	10.5000
AAACAGAAGCUC	chr2:55252969-55253247(-)$1	278	78	90	9.8750
AACCAGAUCAUC	chr10:70333083-70333369(+)$1	286	36	48	9.8750
AAUCAGGCUGUC	chr2:109380765-109381053(+)$1	288	178	190	11.2500
AGUCAUUUAUUC	chr6:136596694-136596941(-)$1	247	227	239	7.6250
CAGCAGUUUGUC	chr11:65349316-65349628(+)$1	312	82	94	12.0000
GAUCAGAUCCUC	chr2:170493740-170494003(+)$1	263	166	178	11.1250
CCCCAGUUUUUC	chr17:27613805-27614096(-)$1	291	103	115	9.0000
AGACAGUUUCUC	chr1:155451016-155451285(-)$1	269	133	145	14.5000
AAGCAGAGUCUU	chr1:46073433-46073660(+)$1	227	36	48	11.2500
AAUCAGUUUCUC	chr2:55252254-55252510(-)$1	256	68	80	19.3750
CAUCAGUUUCUA	chr1:111494799-111495117(-)$1	318	0	12	13.8750
AAAGAGAUACUC	chr3:47164783-47165034(-)$1	251	59	71	9.0000
AAUCAGUUUCUC	chr2:55252344-55252637(-)$1	293	195	207	19.3750
AGUCAGUAUAUC	chr13:33110140-33110393(-)$1	253	34	46	11.6250
AAGCAGUAUUUU	chr1:111490755-111491014(-)$1	259	121	133	12.1250
AAGCAGAGUCUU	chr1:46073460-46073739(+)$1	279	9	21	11.2500
AAUCCUUUUUUU	chr17:27614505-27614764(-)$1	259	6	18	8.3750
AAUCAGGUUCAU	chr2:152319888-152320131(+)$1	243	166	178	11.0000
AAACAGGUUUUU	chr3:160143809-160144057(+)$1	248	217	229	12.1250
AGUCAGUUUCAU	chr1:40703500-40703820(+)$1	320	163	175	10.3750
GAUCAGAUCCUC	chr2:170493659-170493936(+)$1	277	247	259	11.1250
AAACUGUUCAUC	chr15:40916935-40917211(+)$1	276	250	262	8.8750
ACAGAGUUUCUU	chr8:53569095-53569403(-)$1	308	43	55	8.8750
CAGCAGAUUGUC	chr8:17814953-17815234(+)$1	281	89	101	10.2500
AAUCAGAAUCUG	chr1:214814853-214815099(+)$1	246	113	125	12.7500
AAUCUUUUUCUA	chr6:83877574-83877875(-)$1	301	15	27	9.6250
AAUGAGUUAAUG	chr6:4032031-4032329(+)$1	298	83	95	7.7500

#otherMatches

#Struct PSSM
ppppppgggggg	chr7:91690501-91690774(+)$1	273	17	29	9.1250
feeeeeoooooo	chr2:145157097-145157406(-)$1	309	154	166	9.0000
:HHHHHHHHMMM	chr2:152319594-152319919(+)$1	325	38	50	10.2500
eeeee::IIIII	chr11:5443360-5443645(-)$1	285	236	248	9.5000
HHHHHHCCC}BB	chr22:19431811-19432082(-)$1	271	76	88	8.6250
d:::iiiiiiii	chr2:170493232-170493585(+)$1	353	43	55	8.7500
ggghhhhhhhho	chr21:38537785-38538081(+)$1	296	133	145	10.8750
::hhhhhhhhbb	chr1:197072614-197072896(-)$1	282	49	61	8.6250
:::::::fffff	chr2:55253744-55254018(-)$1	274	214	226	8.0000
ooooccc::ddd	chr11:5423936-5424208(-)$1	272	99	111	8.7500
F::HHHHHHHH:	chr12:46320921-46321191(-)$1	270	10	22	14.2500
mmcccbb]ccc:	chr1:203767153-203767404(+)$1	251	197	209	11.7500
dddd333ccc]e	chr10:119043418-119043721(-)$1	303	68	80	10.5000
:::eeeeeccc^	chr2:55252969-55253247(-)$1	278	78	90	9.8750
neeeee:eeeee	chr10:70333083-70333369(+)$1	286	36	48	9.8750
::bb[ccc[fff	chr2:109380765-109381053(+)$1	288	178	190	11.2500
GG::::::::::	chr6:136596694-136596941(-)$1	247	227	239	7.6250
ffff:GGGGGGG	chr11:65349316-65349628(+)$1	312	82	94	12.0000
22ccc22dddd]	chr2:170493740-170494003(+)$1	263	166	178	11.1250
::::IIIIIIII	chr17:27613805-27614096(-)$1	291	103	115	9.0000
eeeee]eeeee2	chr1:155451016-155451285(-)$1	269	133	145	14.5000
MMDDDD:fffff	chr1:46073433-46073660(+)$1	227	36	48	11.2500
fnnnnnffffff	chr2:55252254-55252510(-)$1	256	68	80	19.3750
:::EEEEEMMMM	chr1:111494799-111495117(-)$1	318	0	12	13.8750
ee:gggggggpp	chr3:47164783-47165034(-)$1	251	59	71	9.0000
IIIIIIIIIZZZ	chr2:55252344-55252637(-)$1	293	195	207	19.3750
JJJJJJJJJJJ:	chr13:33110140-33110393(-)$1	253	34	46	11.6250
::::FFFFFFLL	chr1:111490755-111491014(-)$1	259	121	133	12.1250
DDLLLGGGGGGG	chr1:46073460-46073739(+)$1	279	9	21	11.2500
GGGCCCKKGGGG	chr17:27614505-27614764(-)$1	259	6	18	8.3750
hhhhhhhh5555	chr2:152319888-152320131(+)$1	243	166	178	11.0000
:::IIIIIIIII	chr3:160143809-160144057(+)$1	248	217	229	12.1250
KDDDD:hhhhhh	chr1:40703500-40703820(+)$1	320	163	175	10.3750
22ccc22dddd]	chr2:170493659-170493936(+)$1	277	247	259	11.1250
fff]ffffff::	chr15:40916935-40917211(+)$1	276	250	262	8.8750
:eeeeellleee	chr8:53569095-53569403(-)$1	308	43	55	8.8750
gg[a"""ddddf	chr8:17814953-17815234(+)$1	281	89	101	10.2500
:eeeeellleee	chr1:214814853-214815099(+)$1	246	113	125	12.7500
::::::::::::	chr6:83877574-83877875(-)$1	301	15	27	9.6250
:bb[bb####dd	chr6:4032031-4032329(+)$1	298	83	95	7.7500

#DB
......))))))	chr7:91690501-91690774(+)$1	1	17	29	9.1250
)(((((......	chr2:145157097-145157406(-)$1	1	154	166	9.0000
.((((((((...	chr2:152319594-152319919(+)$1	1	38	50	10.2500
)))))..)))))	chr11:5443360-5443645(-)$1	1	236	248	9.5000
))))))))).))	chr22:19431811-19432082(-)$1	1	76	88	8.6250
)...((((((((	chr2:170493232-170493585(+)$1	1	43	55	8.7500
)))((((((((.	chr21:38537785-38538081(+)$1	1	133	145	10.8750
..((((((((((	chr1:197072614-197072896(-)$1	1	49	61	8.6250
.......(((((	chr2:55253744-55254018(-)$1	1	214	226	8.0000
....)))..(((	chr11:5423936-5424208(-)$1	1	99	111	8.7500
(..((((((((.	chr12:46320921-46321191(-)$1	1	10	22	14.2500
..))))).))).	chr1:203767153-203767404(+)$1	1	197	209	11.7500
))))...))).)	chr10:119043418-119043721(-)$1	1	68	80	10.5000
...((((((((.	chr2:55252969-55253247(-)$1	1	78	90	9.8750
.))))).(((((	chr10:70333083-70333369(+)$1	1	36	48	9.8750
..((.(((.(((	chr2:109380765-109381053(+)$1	1	178	190	11.2500
))..........	chr6:136596694-136596941(-)$1	1	227	239	7.6250
)))).)))))))	chr11:65349316-65349628(+)$1	1	82	94	12.0000
..)))..)))).	chr2:170493740-170494003(+)$1	1	166	178	11.1250
....((((((((	chr17:27613805-27614096(-)$1	1	103	115	9.0000
))))).))))).	chr1:155451016-155451285(-)$1	1	133	145	14.5000
..((((.(((((	chr1:46073433-46073660(+)$1	1	36	48	11.2500
(.....))))))	chr2:55252254-55252510(-)$1	1	68	80	19.3750
...(((((....	chr1:111494799-111495117(-)$1	1	0	12	13.8750
)).(((((((..	chr3:47164783-47165034(-)$1	1	59	71	9.0000
)))))))))...	chr2:55252344-55252637(-)$1	1	195	207	19.3750
(((((((((((.	chr13:33110140-33110393(-)$1	1	34	46	11.6250
....((((((..	chr1:111490755-111491014(-)$1	1	121	133	12.1250
((...(((((((	chr1:46073460-46073739(+)$1	1	9	21	11.2500
((((((..((((	chr17:27614505-27614764(-)$1	1	6	18	8.3750
))))))))....	chr2:152319888-152320131(+)$1	1	166	178	11.0000
...)))))))))	chr3:160143809-160144057(+)$1	1	217	229	12.1250
.((((.((((((	chr1:40703500-40703820(+)$1	1	163	175	10.3750
..)))..)))).	chr2:170493659-170493936(+)$1	1	247	259	11.1250
))).))))))..	chr15:40916935-40917211(+)$1	1	250	262	8.8750
.(((((...)))	chr8:53569095-53569403(-)$1	1	43	55	8.8750
((.(...(((((	chr8:17814953-17815234(+)$1	1	89	101	10.2500
.(((((...)))	chr1:214814853-214815099(+)$1	1	113	125	12.7500
............	chr6:83877574-83877875(-)$1	1	15	27	9.6250
.((.((....((	chr6:4032031-4032329(+)$1	1	83	95	7.7500

#PSSM
A : 0.75	C : 0.12	G : 0.07	U : 0.05	
A : 0.75	G : 0.12	U : 0.07	C : 0.05	
U : 0.55	A : 0.19	G : 0.17	C : 0.07	
C : 0.85	G : 0.12	U : 0.02	
A : 0.82	U : 0.15	C : 0.02	
G : 0.90	U : 0.10	
U : 0.60	A : 0.24	G : 0.10	C : 0.05	
U : 0.67	A : 0.19	G : 0.10	C : 0.02	
U : 0.75	C : 0.12	A : 0.10	G : 0.02	
C : 0.55	U : 0.27	A : 0.10	G : 0.07	
U : 0.90	C : 0.05	A : 0.05	
C : 0.57	U : 0.24	A : 0.10	G : 0.07	

#score	432.25000000000006
#seq	40
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_transcript_m1_run1.nuc.txt

#NT
AGGGGUCGGGGUAGGGGGG	chr9:139815766-139816033(+)$1	267	97	116	23.7307
ggggcugggcggggcgagg	chr10:103589181-103589473(-)$1	292	56	75	20.4615
GGUGGCUGGGGUGGCGAGG	chr19:3694288-3694538(-)$1	250	87	106	20.5576
ggagugggggguggaggag	chr1:54412707-54412986(+)$1	279	67	86	22.1923
uggggggugggugggggca	chr9:140463523-140463778(-)$1	255	2	21	21.2307
UGGGGUGGGGCUGGGGGGU	chrX:149107381-149107633(+)$1	252	203	222	25.5576
gggggugggggugggggug	chr12:125048887-125049158(-)$1	271	70	89	33.0576
gagggggaggguggaggga	chr11:2328156-2328466(+)$1	310	78	97	19.8846
GGGGGAAAGGGUGGGGGUA	chr1:156531840-156532136(-)$1	296	223	242	20.5576
UGGGGAAGGGGUGGGGGCU	chr19:18535594-18535840(+)$1	246	91	110	21.9999
GGAGGAGGGGGUGGGUGGG	chr20:31367527-31367799(+)$1	272	89	108	26.0384
GCAGGUGGGGGAGGGGGCC	chr19:10479005-10479316(-)$1	311	105	124	23.4423
GGGGUUGGGGGUGGGGACU	chr16:1422292-1422540(-)$1	248	22	41	26.6153
AGGGGAGGGGGUGUGGCCG	chr17:76124231-76124508(-)$1	277	84	103	21.4230
GGGGGUGGGGGCUGGGAGU	chr3:42845636-42845929(-)$1	293	95	114	24.9807
GGAGGUGGGGGAGGGGAGG	chr16:19718739-19719069(-)$1	330	70	89	28.5384
AGGGCCGGGGGCGGGGAGU	chr20:1165576-1165857(-)$1	281	119	138	20.3653
UAGGGUGGGAGUGGGGGUU	chr1:52811929-52812198(+)$1	269	83	102	19.9807
gaacaugggggugggggga	chr19:18535376-18535630(+)$1	254	31	50	19.5961
GGGGGUGUGGUUGGCGAGG	chr1:27918609-27918918(-)$1	309	145	164	21.8076
CGGGCUGGGGCUGGGGUGU	chr20:60627432-60627704(-)$1	272	119	138	20.2692
gaggguggcgguggcgccg	chr1:229407159-229407457(+)$1	298	44	63	20.7499
AGGGCAGGGGGUGGGGCAG	chr11:404660-404978(+)$1	318	104	123	23.2499
gcggggcggggcggggggc	chr1:245026253-245026519(-)$1	266	96	115	21.2307
gggauugggggucgggggc	chr3:43146923-43147198(-)$1	275	117	136	21.4230
GGAGCUGGGGGUGGCGCAC	chr19:2270414-2270659(+)$1	245	100	119	21.1346
ggggcugggguuggggcug	chr7:105925000-105925276(-)$1	276	82	101	24.2115
ggaggaggggcugggggcc	chr19:49675017-49675383(+)$1	366	81	100	23.1538
ggugagcgggguggggggg	chr4:920463-920739(-)$1	276	56	75	22.8653
gggggagggggcggggggg	chr19:40791079-40791365(-)$1	286	89	108	30.8461
GCGGGUGGGGGGUGGGGGG	chrX:53710625-53710897(-)$1	272	86	105	24.8846
GGGGAUGGGGGAGGAGGAG	chr8:26240675-26240933(+)$1	258	98	117	25.0769
gggggggggggggggggag	chr17:6817863-6818143(-)$1	280	75	94	28.6346
GGGGGUGGGGUUGGGUGCA	chr1:228588823-228589074(-)$1	251	65	84	22.9615
GGCGGCGGGGGAGGACGGG	chr1:55505778-55506078(+)$1	300	96	115	19.4038
CGGGGCGGGGGAGUGGUGG	chr9:94648655-94648944(-)$1	289	79	98	19.5961
agggguggggguggaguug	chr1:6065382-6065702(+)$1	320	83	102	23.8269
GGAGGUGGGAGCUGGGAGG	chr16:3071328-3071620(+)$1	292	98	117	20.0769
GAAGGAGGGGGCGGGGGGC	chr15:89451937-89452271(-)$1	334	130	149	23.1538
ggugguuggggggggguau	chr2:131967817-131968077(+)$1	260	83	102	19.4038
gggaggggaggagggggag	chr1:27930315-27930553(-)$1	238	82	101	20.3653
GGUGCUGGGGCUGGGGCAG	chr8:142430157-142430395(+)$1	238	54	73	21.8076
GGGGAUGGCGGUGGCGGGG	chr11:394463-394711(+)$1	248	82	101	24.4999
GUGUGUGGGGGUGGGGAGC	chr7:158656426-158656692(+)$1	266	158	177	23.3461
GAGGGUGGGAgcgggggcc	chr21:38740053-38740315(+)$1	262	87	106	21.9999
GAGGCUGGGGGAAGGGGAG	chr7:150066302-150066605(+)$1	303	111	130	21.6153
GGGGCAGGGGGAGGUGGCG	chr17:17589548-17589836(+)$1	288	91	110	23.2499
gguggaggaggugaggggc	chr22:21343986-21344261(+)$1	275	49	68	19.1153
GGGGGUGAGGGUGGGGAGG	chr16:1749167-1749436(+)$1	269	93	112	29.0192
GGGGGUCGGGGCGGGCCCA	chr5:6601563-6601851(-)$1	288	96	115	18.7307
gugggugggGGAAGGGGAG	chr5:139030904-139031158(+)$1	254	82	101	23.7307

#otherMatches

#Struct PSSM
dddccc]eeeee]bb:DDD	chr21:45734185-45734505(+)$1	320	90	109	22.5769
"""bb[bb[==========	chr9:139815766-139816033(+)$1	267	97	116	23.7307
{BBCCC::::dddd[ccc=	chr10:103589181-103589473(-)$1	292	56	75	20.4615
dddd[eeeee[a!!a[bb!	chr19:3694288-3694538(-)$1	250	87	106	20.5576
^^^^ffffff]a::::ddd	chr1:54412707-54412986(+)$1	279	67	86	22.1923
:iiiiiiiii[bb[iiiii	chr9:140463523-140463778(-)$1	255	2	21	21.2307
e22eeeee22bb4444ccc	chrX:149107381-149107633(+)$1	252	203	222	25.5576
iiiiiiii22eeeeeGGGG	chr12:125048887-125049158(-)$1	271	70	89	33.0576
bbffffff[ccc"""eeee	chr11:2328156-2328466(+)$1	310	78	97	19.8846
tttttttttccc22dddd:	chr1:156531840-156532136(-)$1	296	223	242	20.5576
cc%%%%%%===========	chr19:18535594-18535840(+)$1	246	91	110	21.9999
=="""ggggggg[dddd[a	chr20:31367527-31367799(+)$1	272	89	108	26.0384
]a]iiiiiiiiieeeee[c	chr19:10479005-10479316(-)$1	311	105	124	23.4423
eeeeFFFFFF{A{FFFFFF	chr16:1422292-1422540(-)$1	248	22	41	26.6153
eccc22dddd]eeeeebbo	chr17:76124231-76124508(-)$1	277	84	103	21.4230
J:dddd[ccc[bb[bb!!e	chr3:42845636-42845929(-)$1	293	95	114	24.9807
EEEEE{FFFFFFKKFFFFF	chr16:19718739-19719069(-)$1	330	70	89	28.5384
Iffffffdddd!!ccc!!b	chr20:1165576-1165857(-)$1	281	119	138	20.3653
GGGGGGG}EEEEEZZZGGG	chr1:52811929-52812198(+)$1	269	83	102	19.9807
dddd666666ccc::::::	chr19:18535376-18535630(+)$1	254	31	50	19.5961
rrrrrccc]ccc]bb22cc	chr1:27918609-27918918(-)$1	309	145	164	21.8076
a[cccmmmmccc]a]eeee	chr20:60627432-60627704(-)$1	272	119	138	20.2692
::bb[eeeeemmmmeeeee	chr1:229407159-229407457(+)$1	298	44	63	20.7499
qqqqqqffffffGGGGGGG	chr11:404660-404978(+)$1	318	104	123	23.2499
2ggggggg]a::GGGGGGG	chr1:245026253-245026519(-)$1	266	96	115	21.2307
d333iiiiiiiii::::cc	chr3:43146923-43147198(-)$1	275	117	136	21.4230
f!!a[a[fffffflllfff	chr19:2270414-2270659(+)$1	245	100	119	21.1346
[a[ccc####bb[dddda[	chr7:105925000-105925276(-)$1	276	82	101	24.2115
777777ccc]ccciiiiii	chr19:49675017-49675383(+)$1	366	81	100	23.1538
:BB{CCCJJJJJJJJJJ{C	chr4:920463-920739(-)$1	276	56	75	22.8653
e[bb!!bb[eeeee[bb[c	chr19:40791079-40791365(-)$1	286	89	108	30.8461
bbdddd"""bb[dddd[ee	chrX:53710625-53710897(-)$1	272	86	105	24.8846
ddd:::dddd!!aoooooo	chr8:26240675-26240933(+)$1	258	98	117	25.0769
:::::::A{A{A{FFFFFF	chr17:6817863-6818143(-)$1	280	75	94	28.6346
++++++++++++dddd[==	chr1:228588823-228589074(-)$1	251	65	84	22.9615
aBB{DDDDKKDDDD{DDDD	chr1:55505778-55506078(+)$1	300	96	115	19.4038
d4444ffffff]bbccc]c	chr9:94648655-94648944(-)$1	289	79	98	19.5961
:JJJJJJJJJJ{CCC{BB{	chr1:6065382-6065702(+)$1	320	83	102	23.8269
]eeeeeBB{JJJJJJJJJJ	chr16:3071328-3071620(+)$1	292	98	117	20.0769
ppppppffffff]bbffff	chr15:89451937-89452271(-)$1	334	130	149	23.1538
eeeedddd[ccc[bbcccp	chr2:131967817-131968077(+)$1	260	83	102	19.4038
bb"""ccc[bb[bb[bb!!	chr1:27930315-27930553(-)$1	238	82	101	20.3653
bb]ffffff]affffff33	chr8:142430157-142430395(+)$1	238	54	73	21.8076
ddd22ggggggg22bb22a	chr11:394463-394711(+)$1	248	82	101	24.4999
[ccc"""bb[bb[ffffff	chr7:158656426-158656692(+)$1	266	158	177	23.3461
EEEEE{FFFFFFEEEEE::	chr21:38740053-38740315(+)$1	262	87	106	21.9999
&&&&bboooooobb55555	chr7:150066302-150066605(+)$1	303	111	130	21.6153
=======hhhhhhhhqqqq	chr17:17589548-17589836(+)$1	288	91	110	23.2499
cc[ddddeeeee!!ccc""	chr22:21343986-21344261(+)$1	275	49	68	19.1153
a]a]eeeee::::EEEEED	chr16:1749167-1749436(+)$1	269	93	112	29.0192
]ffffff]a]bb:::ccc[	chr5:6601563-6601851(-)$1	288	96	115	18.7307
JJJJJJJJJJKKJJJJJJJ	chr5:139030904-139031158(+)$1	254	82	101	23.7307

#DB
)))))).))))).)).)))	chr21:45734185-45734505(+)$1	1	90	109	22.5769
...((.((.((((((((((	chr9:139815766-139816033(+)$1	1	97	116	23.7307
.(((((....((((.((((	chr10:103589181-103589473(-)$1	1	56	75	20.4615
((((.(((((.(..(.((.	chr19:3694288-3694538(-)$1	1	87	106	20.5576
....)))))).)....(((	chr1:54412707-54412986(+)$1	1	67	86	22.1923
.(((((((((.((.(((((	chr9:140463523-140463778(-)$1	1	2	21	21.2307
)..)))))..))....)))	chrX:149107381-149107633(+)$1	1	203	222	25.5576
))))))))..)))))))))	chr12:125048887-125049158(-)$1	1	70	89	33.0576
((((((((.(((...((((	chr11:2328156-2328466(+)$1	1	78	97	19.8846
.........)))..)))).	chr1:156531840-156532136(-)$1	1	223	242	20.5576
((......(((((((((((	chr19:18535594-18535840(+)$1	1	91	110	21.9999
((...(((((((.((((.(	chr20:31367527-31367799(+)$1	1	89	108	26.0384
.).)))))))))(((((.(	chr19:10479005-10479316(-)$1	1	105	124	23.4423
))))((((((.(.((((((	chr16:1422292-1422540(-)$1	1	22	41	26.6153
))))..)))).)))))((.	chr17:76124231-76124508(-)$1	1	84	103	21.4230
(.((((.(((.((.((..(	chr3:42845636-42845929(-)$1	1	95	114	24.9807
(((((.((((((..(((((	chr16:19718739-19719069(-)$1	1	70	89	28.5384
(((((((((((..(((..(	chr20:1165576-1165857(-)$1	1	119	138	20.3653
))))))).)))))...)))	chr1:52811929-52812198(+)$1	1	83	102	19.9807
))))......)))......	chr19:18535376-18535630(+)$1	1	31	50	19.5961
.....))).))).))..))	chr1:27918609-27918918(-)$1	1	145	164	21.8076
(.(((....))).).))))	chr20:60627432-60627704(-)$1	1	119	138	20.2692
..((.(((((....)))))	chr1:229407159-229407457(+)$1	1	44	63	20.7499
......))))))(((((((	chr11:404660-404978(+)$1	1	104	123	23.2499
.))))))).)..(((((((	chr1:245026253-245026519(-)$1	1	96	115	21.2307
)...)))))))))....((	chr3:43146923-43147198(-)$1	1	117	136	21.4230
(..(.(.((((((...)))	chr19:2270414-2270659(+)$1	1	100	119	21.1346
.(.(((....((.(((((.	chr7:105925000-105925276(-)$1	1	82	101	24.2115
......))).)))((((((	chr19:49675017-49675383(+)$1	1	81	100	23.1538
.((.(((((((((((((.(	chr4:920463-920739(-)$1	1	56	75	22.8653
(.((..((.(((((.((.(	chr19:40791079-40791365(-)$1	1	89	108	30.8461
((((((...((.((((.((	chrX:53710625-53710897(-)$1	1	86	105	24.8846
)))...((((..(......	chr8:26240675-26240933(+)$1	1	98	117	25.0769
.......(.(.(.((((((	chr17:6817863-6818143(-)$1	1	75	94	28.6346
............((((.((	chr1:228588823-228589074(-)$1	1	65	84	22.9615
)((.((((..((((.((((	chr1:55505778-55506078(+)$1	1	96	115	19.4038
)....)))))).))))).)	chr9:94648655-94648944(-)$1	1	79	98	19.5961
.((((((((((.(((.((.	chr1:6065382-6065702(+)$1	1	83	102	23.8269
.)))))((.((((((((((	chr16:3071328-3071620(+)$1	1	98	117	20.0769
......)))))).))))))	chr15:89451937-89452271(-)$1	1	130	149	23.1538
))))((((.(((.(((((.	chr2:131967817-131968077(+)$1	1	83	102	19.4038
((...(((.((.((.((..	chr1:27930315-27930553(-)$1	1	82	101	20.3653
)).)))))).)))))))..	chr8:142430157-142430395(+)$1	1	54	73	21.8076
)))..)))))))..))..)	chr11:394463-394711(+)$1	1	82	101	24.4999
.(((...((.((.((((((	chr7:158656426-158656692(+)$1	1	158	177	23.3461
(((((.(((((((((((..	chr21:38740053-38740315(+)$1	1	87	106	21.9999
....((......)).....	chr7:150066302-150066605(+)$1	1	111	130	21.6153
(((((((((((((((....	chr17:17589548-17589836(+)$1	1	91	110	23.2499
((.(((((((((..(((..	chr22:21343986-21344261(+)$1	1	49	68	19.1153
).).)))))....)))))(	chr16:1749167-1749436(+)$1	1	93	112	29.0192
.)))))).).))...(((.	chr5:6601563-6601851(-)$1	1	96	115	18.7307
((((((((((..(((((((	chr5:139030904-139031158(+)$1	1	82	101	23.7307

#PSSM
G : 0.46	g : 0.32	A : 0.07	U : 0.05	C : 0.03	u : 0.01	a : 0.01	
G : 0.49	g : 0.26	A : 0.07	a : 0.05	C : 0.03	c : 0.01	U : 0.01	u : 0.01	
G : 0.44	g : 0.24	A : 0.11	a : 0.05	u : 0.05	C : 0.03	U : 0.03	
G : 0.59	g : 0.30	U : 0.03	a : 0.03	c : 0.01	
G : 0.44	g : 0.24	C : 0.13	c : 0.03	u : 0.03	a : 0.03	A : 0.03	U : 0.01	
U : 0.42	u : 0.17	g : 0.13	A : 0.13	C : 0.07	a : 0.05	
G : 0.53	g : 0.30	C : 0.03	A : 0.03	c : 0.03	U : 0.01	u : 0.01	
G : 0.57	g : 0.32	A : 0.03	u : 0.01	a : 0.01	U : 0.01	
G : 0.61	g : 0.30	a : 0.03	c : 0.01	C : 0.01	
G : 0.59	g : 0.32	A : 0.05	c : 0.01	
G : 0.53	g : 0.32	C : 0.05	U : 0.03	u : 0.01	c : 0.01	
U : 0.36	u : 0.23	A : 0.15	C : 0.09	g : 0.05	c : 0.05	G : 0.01	a : 0.01	
G : 0.51	g : 0.34	A : 0.05	U : 0.05	c : 0.01	
G : 0.59	g : 0.34	U : 0.03	a : 0.01	
G : 0.48	g : 0.26	C : 0.09	a : 0.05	c : 0.03	A : 0.03	U : 0.01	
G : 0.55	g : 0.36	U : 0.03	C : 0.03	
G : 0.30	g : 0.26	A : 0.19	C : 0.09	U : 0.03	c : 0.03	u : 0.03	a : 0.01	
G : 0.34	g : 0.15	C : 0.13	A : 0.11	a : 0.07	c : 0.07	u : 0.05	U : 0.03	
G : 0.36	g : 0.19	U : 0.13	c : 0.09	C : 0.07	a : 0.05	A : 0.05	u : 0.01	

#score	1188.2307692307686
#seq	52
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_UTR_m3_run1.nuc.txt

#NT
GUUGUC	chr12:49085095-49085321(-)$1	226	27	33	9.7857
GUUGGG	chr2:61763836-61764097(-)$1	261	103	109	9.7857
GUUGUG	chr7:104753296-104753543(-)$1	247	221	227	13.7857
GUUGUG	chr7:104753068-104753344(-)$1	276	22	28	13.7857
gcUGUG	chr21:30671610-30671852(+)$1	242	46	52	9.9999
GUAGUG	chr1:155532349-155532628(-)$1	279	106	112	9.8571
GUUGUC	chr1:20235995-20236245(+)$1	250	34	40	9.7857
UUUGUG	chr3:197476958-197477196(+)$1	238	52	58	9.7142
GUAGUG	chr1:20236681-20236934(+)$1	253	110	116	9.8571
AUUGUG	chr1:20235825-20236060(+)$1	235	9	15	9.6428
GUUGUG	chr1:246646682-246646929(-)$1	247	149	155	13.7857
guggug	chr2:169721822-169722137(-)$1	315	42	48	10.0714
GUUGUU	chr15:28508123-28508384(-)$1	261	35	41	9.4999
uuugug	chr4:1385787-1386036(+)$1	249	25	31	9.7142
GUUGUG	chr15:93443364-93443621(+)$1	257	144	150	13.7857
GCUGUG	chr1:20235922-20236195(+)$1	273	20	26	9.9999
GAUGUG	chr6:170844171-170844435(-)$1	264	41	47	9.9285
gaugug	chr4:1386821-1387063(+)$1	242	39	45	9.9285
CUUGUG	chr19:57862812-57863090(+)$1	278	92	98	9.5714
UUUGUG	chr7:104752274-104752544(-)$1	270	50	56	9.7142
GUUAUG	chr20:23356303-23356553(-)$1	250	93	99	9.6428
GUUUUG	chr5:112350348-112350588(+)$1	240	46	52	9.9999
CUUGUG	chr16:1360089-1360339(+)$1	250	174	180	9.5714
GAUGUG	chr12:49084047-49084296(-)$1	249	37	43	9.9285
ggugug	chr11:14358563-14358806(-)$1	243	24	30	9.8571
GUUGGG	chr3:196075382-196075634(-)$1	252	113	119	9.7857
GUGGUG	chr20:34252564-34252818(-)$1	254	18	24	10.0714
GUUGGG	chr1:246646952-246647228(-)$1	276	9	15	9.7857
GUGGUG	chr1:20234939-20235191(+)$1	252	23	29	10.0714
GUGGUG	chr1:20236808-20237048(+)$1	240	14	20	10.0714
GUAGUG	chr11:3009228-3009472(-)$1	244	60	66	9.8571
GUUGUA	chr7:104752927-104753160(-)$1	233	30	36	9.6428
GUUGUC	chr12:133404892-133405105(-)$1	213	183	189	9.7857
GGUGUG	chr7:923631-923877(+)$1	246	182	188	9.8571
GUUCUG	chr7:104752495-104752757(-)$1	262	39	45	9.8571
GUUUUG	chr7:104752577-104752880(-)$1	303	0	6	9.9999
GCUGUG	chr3:197477070-197477322(+)$1	252	109	115	9.9999
UUUGUG	chr20:23357353-23357589(-)$1	236	103	109	9.7142
GGUGUG	chr16:1362463-1362685(+)$1	222	204	210	9.8571
GAUGUG	chr1:20235463-20235687(+)$1	224	45	51	9.9285
GUUGUG	chr21:38458801-38459057(+)$1	256	84	90	13.7857
AUUGUG	chr21:30671967-30672219(+)$1	252	60	66	9.6428
GUUGUC	chr1:20236622-20236849(+)$1	227	39	45	9.7857
GUUGGG	chr8:102217052-102217370(-)$1	318	176	182	9.7857
GUUUUG	chr5:151151923-151152181(+)$1	258	163	169	9.9999
GUUUUG	chr20:23355375-23355619(-)$1	244	94	100	9.9999
GUUGUG	chr17:29632159-29632448(+)$1	289	56	62	13.7857
GUUGUC	chr12:72234774-72235014(+)$1	240	72	78	9.7857
GUUGGG	chr1:20234862-20235130(+)$1	268	85	91	9.7857
GUGGUG	chr1:155657635-155657891(-)$1	256	142	148	10.0714
GUUGUA	chr7:104752960-104753191(-)$1	231	61	67	9.6428
GCUGUG	chr20:23357702-23357962(-)$1	260	100	106	9.9999
guuuug	chr12:72255091-72255351(+)$1	260	19	25	9.9999
guucug	chr4:1386696-1386961(+)$1	265	16	22	9.8571
AUUGUG	chr1:20235810-20236025(+)$1	215	24	30	9.6428
GCUGUG	chr19:9785537-9785788(-)$1	251	36	42	9.9999
GUUGUG	chr11:3011202-3011442(-)$1	240	102	108	13.7857
GUUGUG	chr1:246646591-246646879(-)$1	288	99	105	13.7857
GUGGUG	chr1:155658225-155658511(-)$1	286	183	189	10.0714
GUUGGG	chr1:155657981-155658195(-)$1	214	2	8	9.7857
GUUCUG	chr1:40840181-40840450(+)$1	269	2	8	9.8571
guuuug	chr4:1386517-1386792(+)$1	275	120	126	9.9999
GUAGUG	chr1:20236791-20237008(+)$1	217	0	6	9.8571
GUUGUA	chr1:20235102-20235313(+)$1	211	94	100	9.6428
GUUCUG	chr7:104752833-104753078(-)$1	245	33	39	9.8571
guggug	chr4:1386354-1386645(+)$1	291	116	122	10.0714
GUUGUG	chr17:29632338-29632613(+)$1	275	134	140	13.7857
GUUGUG	chr2:38603474-38603736(-)$1	262	90	96	13.7857
GUUGGG	chr20:30947293-30947530(+)$1	237	180	186	9.7857

#otherMatches

#Struct PSSM
EEEEE}	chr11:3011271-3011531(-)$1	260	191	197	13.7857
emmmme	chr12:49085095-49085321(-)$1	226	27	33	9.7857
[bb[dd	chr2:61763836-61764097(-)$1	261	103	109	9.7857
hhhhhh	chr7:104753296-104753543(-)$1	247	221	227	13.7857
[dddd[	chr7:104753068-104753344(-)$1	276	22	28	13.7857
dd[ccc	chr21:30671610-30671852(+)$1	242	46	52	9.9999
ccc]a:	chr1:155532349-155532628(-)$1	279	106	112	9.8571
eeeess	chr1:20235995-20236245(+)$1	250	34	40	9.7857
dddmmm	chr3:197476958-197477196(+)$1	238	52	58	9.7142
444fff	chr1:20236681-20236934(+)$1	253	110	116	9.8571
c[dddd	chr1:20235825-20236060(+)$1	235	9	15	9.6428
g:::::	chr1:246646682-246646929(-)$1	247	149	155	13.7857
DKKDDD	chr2:169721822-169722137(-)$1	315	42	48	10.0714
[eeeee	chr15:28508123-28508384(-)$1	261	35	41	9.4999
qqqqqb	chr4:1385787-1386036(+)$1	249	25	31	9.7142
mmmma]	chr15:93443364-93443621(+)$1	257	144	150	13.7857
cbb]cc	chr1:20235922-20236195(+)$1	273	20	26	9.9999
CCCeee	chr6:170844171-170844435(-)$1	264	41	47	9.9285
odddd2	chr4:1386821-1387063(+)$1	242	39	45	9.9285
::::dd	chr19:57862812-57863090(+)$1	278	92	98	9.5714
hhhhhh	chr7:104752274-104752544(-)$1	270	50	56	9.7142
ddd]a]	chr20:23356303-23356553(-)$1	250	93	99	9.6428
======	chr5:112350348-112350588(+)$1	240	46	52	9.9999
:EEEEE	chr16:1360089-1360339(+)$1	250	174	180	9.5714
EELLLC	chr12:49084047-49084296(-)$1	249	37	43	9.9285
ddd[cc	chr11:14358563-14358806(-)$1	243	24	30	9.8571
======	chr3:196075382-196075634(-)$1	252	113	119	9.7857
BB{DDD	chr20:34252564-34252818(-)$1	254	18	24	10.0714
mdddd:	chr1:246646952-246647228(-)$1	276	9	15	9.7857
[cccss	chr1:20234939-20235191(+)$1	252	23	29	10.0714
====[c	chr1:20236808-20237048(+)$1	240	14	20	10.0714
:BB{JJ	chr11:3009228-3009472(-)$1	244	60	66	9.8571
:fffff	chr7:104752927-104753160(-)$1	233	30	36	9.6428
:eeeee	chr12:133404892-133405105(-)$1	213	183	189	9.7857
eeee:B	chr7:923631-923877(+)$1	246	182	188	9.8571
ccc:::	chr7:104752495-104752757(-)$1	262	39	45	9.8571
::::::	chr7:104752577-104752880(-)$1	303	0	6	9.9999
fffff]	chr3:197477070-197477322(+)$1	252	109	115	9.9999
!!dddd	chr20:23357353-23357589(-)$1	236	103	109	9.7142
dddd:C	chr16:1362463-1362685(+)$1	222	204	210	9.8571
fffff:	chr1:20235463-20235687(+)$1	224	45	51	9.9285
nneeee	chr21:38458801-38459057(+)$1	256	84	90	13.7857
:::::f	chr21:30671967-30672219(+)$1	252	60	66	9.6428
mmmccc	chr1:20236622-20236849(+)$1	227	39	45	9.7857
^^^^^^	chr8:102217052-102217370(-)$1	318	176	182	9.7857
""eeee	chr5:151151923-151152181(+)$1	258	163	169	9.9999
22bb]c	chr20:23355375-23355619(-)$1	244	94	100	9.9999
ccc]cc	chr17:29632159-29632448(+)$1	289	56	62	13.7857
e&&&&&	chr12:72234774-72235014(+)$1	240	72	78	9.7857
ffffff	chr1:20234862-20235130(+)$1	268	85	91	9.7857
hhhhh:	chr1:155657635-155657891(-)$1	256	142	148	10.0714
dd]eee	chr7:104752960-104753191(-)$1	231	61	67	9.6428
22dddd	chr20:23357702-23357962(-)$1	260	100	106	9.9999
EEEEEE	chr12:72255091-72255351(+)$1	260	19	25	9.9999
cc!!dd	chr4:1386696-1386961(+)$1	265	16	22	9.8571
ffffff	chr1:20235810-20236025(+)$1	215	24	30	9.6428
cc]eee	chr19:9785537-9785788(-)$1	251	36	42	9.9999
EEEEE{	chr11:3011202-3011442(-)$1	240	102	108	13.7857
g:::::	chr1:246646591-246646879(-)$1	288	99	105	13.7857
ooccc]	chr1:155658225-155658511(-)$1	286	183	189	10.0714
======	chr1:155657981-155658195(-)$1	214	2	8	9.7857
:hhhhh	chr1:40840181-40840450(+)$1	269	2	8	9.8571
ff4444	chr4:1386517-1386792(+)$1	275	120	126	9.9999
ccc[cc	chr1:20236791-20237008(+)$1	217	0	6	9.8571
e!!ccc	chr1:20235102-20235313(+)$1	211	94	100	9.6428
adddd"	chr7:104752833-104753078(-)$1	245	33	39	9.8571
hhhhhh	chr4:1386354-1386645(+)$1	291	116	122	10.0714
qqqbb]	chr17:29632338-29632613(+)$1	275	134	140	13.7857
hhbbdd	chr2:38603474-38603736(-)$1	262	90	96	13.7857
mmmmee	chr20:30947293-30947530(+)$1	237	180	186	9.7857

#DB
))))).	chr11:3011271-3011531(-)$1	1	191	197	13.7857
(....)	chr12:49085095-49085321(-)$1	1	27	33	9.7857
.((.((	chr2:61763836-61764097(-)$1	1	103	109	9.7857
))))))	chr7:104753296-104753543(-)$1	1	221	227	13.7857
.((((.	chr7:104753068-104753344(-)$1	1	22	28	13.7857
((.(((	chr21:30671610-30671852(+)$1	1	46	52	9.9999
))).).	chr1:155532349-155532628(-)$1	1	106	112	9.8571
((((..	chr1:20235995-20236245(+)$1	1	34	40	9.7857
(((...	chr3:197476958-197477196(+)$1	1	52	58	9.7142
...)))	chr1:20236681-20236934(+)$1	1	110	116	9.8571
(.((((	chr1:20235825-20236060(+)$1	1	9	15	9.6428
).....	chr1:246646682-246646929(-)$1	1	149	155	13.7857
(..(((	chr2:169721822-169722137(-)$1	1	42	48	10.0714
.(((((	chr15:28508123-28508384(-)$1	1	35	41	9.4999
.....)	chr4:1385787-1386036(+)$1	1	25	31	9.7142
....).	chr15:93443364-93443621(+)$1	1	144	150	13.7857
))).))	chr1:20235922-20236195(+)$1	1	20	26	9.9999
((((((	chr6:170844171-170844435(-)$1	1	41	47	9.9285
.)))).	chr4:1386821-1387063(+)$1	1	39	45	9.9285
....((	chr19:57862812-57863090(+)$1	1	92	98	9.5714
))))))	chr7:104752274-104752544(-)$1	1	50	56	9.7142
))).).	chr20:23356303-23356553(-)$1	1	93	99	9.6428
))))))	chr5:112350348-112350588(+)$1	1	46	52	9.9999
.)))))	chr16:1360089-1360339(+)$1	1	174	180	9.5714
((...(	chr12:49084047-49084296(-)$1	1	37	43	9.9285
(((.((	chr11:14358563-14358806(-)$1	1	24	30	9.8571
((((((	chr3:196075382-196075634(-)$1	1	113	119	9.7857
((.(((	chr20:34252564-34252818(-)$1	1	18	24	10.0714
.)))).	chr1:246646952-246647228(-)$1	1	9	15	9.7857
.(((..	chr1:20234939-20235191(+)$1	1	23	29	10.0714
((((.(	chr1:20236808-20237048(+)$1	1	14	20	10.0714
.((.((	chr11:3009228-3009472(-)$1	1	60	66	9.8571
.(((((	chr7:104752927-104753160(-)$1	1	30	36	9.6428
.(((((	chr12:133404892-133405105(-)$1	1	183	189	9.7857
)))).)	chr7:923631-923877(+)$1	1	182	188	9.8571
)))...	chr7:104752495-104752757(-)$1	1	39	45	9.8571
......	chr7:104752577-104752880(-)$1	1	0	6	9.9999
))))).	chr3:197477070-197477322(+)$1	1	109	115	9.9999
..((((	chr20:23357353-23357589(-)$1	1	103	109	9.7142
)))).)	chr16:1362463-1362685(+)$1	1	204	210	9.8571
))))).	chr1:20235463-20235687(+)$1	1	45	51	9.9285
..))))	chr21:38458801-38459057(+)$1	1	84	90	13.7857
.....(	chr21:30671967-30672219(+)$1	1	60	66	9.6428
...)))	chr1:20236622-20236849(+)$1	1	39	45	9.7857
......	chr8:102217052-102217370(-)$1	1	176	182	9.7857
..((((	chr5:151151923-151152181(+)$1	1	163	169	9.9999
..)).)	chr20:23355375-23355619(-)$1	1	94	100	9.9999
))).))	chr17:29632159-29632448(+)$1	1	56	62	13.7857
(.....	chr12:72234774-72235014(+)$1	1	72	78	9.7857
))))))	chr1:20234862-20235130(+)$1	1	85	91	9.7857
))))).	chr1:155657635-155657891(-)$1	1	142	148	10.0714
)).)))	chr7:104752960-104753191(-)$1	1	61	67	9.6428
..))))	chr20:23357702-23357962(-)$1	1	100	106	9.9999
((((((	chr12:72255091-72255351(+)$1	1	19	25	9.9999
((..((	chr4:1386696-1386961(+)$1	1	16	22	9.8571
((((((	chr1:20235810-20236025(+)$1	1	24	30	9.6428
)).)))	chr19:9785537-9785788(-)$1	1	36	42	9.9999
(((((.	chr11:3011202-3011442(-)$1	1	102	108	13.7857
).....	chr1:246646591-246646879(-)$1	1	99	105	13.7857
..))).	chr1:155658225-155658511(-)$1	1	183	189	10.0714
((((((	chr1:155657981-155658195(-)$1	1	2	8	9.7857
.(((((	chr1:40840181-40840450(+)$1	1	2	8	9.8571
))....	chr4:1386517-1386792(+)$1	1	120	126	9.9999
(((.((	chr1:20236791-20237008(+)$1	1	0	6	9.8571
(..(((	chr1:20235102-20235313(+)$1	1	94	100	9.6428
(((((.	chr7:104752833-104753078(-)$1	1	33	39	9.8571
))))))	chr4:1386354-1386645(+)$1	1	116	122	10.0714
...)).	chr17:29632338-29632613(+)$1	1	134	140	13.7857
))((((	chr2:38603474-38603736(-)$1	1	90	96	13.7857
....))	chr20:30947293-30947530(+)$1	1	180	186	9.7857

#PSSM
G : 0.75	g : 0.11	U : 0.04	A : 0.04	C : 0.02	u : 0.01	
U : 0.74	u : 0.08	C : 0.05	A : 0.04	G : 0.02	c : 0.01	a : 0.01	g : 0.01	
U : 0.75	u : 0.08	G : 0.07	A : 0.05	g : 0.02	
G : 0.77	g : 0.07	U : 0.05	C : 0.04	u : 0.02	A : 0.01	c : 0.01	
U : 0.78	u : 0.11	G : 0.10	
G : 0.75	g : 0.11	C : 0.07	A : 0.04	U : 0.01	

#score	732.7142857142851
#seq	70
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_CDS_m2_run2.nuc.txt

#NT
GCUGGGGGCG	chr3:195622002-195622281(-)$1	279	141	151	17.2340
GCGCGGGCGG	chr16:4664672-4664952(-)$1	280	109	119	15.4255
GCUGGUGAGG	chr5:154135352-154135593(+)$1	241	33	43	16.7021
GCUGGGGCUG	chr16:4387421-4387698(-)$1	277	59	69	19.1489
GCUGGGGCAG	chr1:228329268-228329579(+)$1	311	133	143	19.3617
GCAGGGGCUG	chr19:1468752-1469027(-)$1	275	68	78	16.0638
GCUGGGCUGG	chr19:1467818-1468101(-)$1	283	100	110	15.7446
gccggggagg	chr2:54197737-54198042(-)$1	305	72	82	17.9787
GCUAGGGUGG	chr19:2425975-2426264(-)$1	289	3	13	15.2127
GCUGGUGAGG	chr22:19704745-19705029(+)$1	284	219	229	16.7021
GCUGGGGCCG	chr16:2059546-2059791(-)$1	245	163	173	19.4680
CCUGGGGAGG	chr17:76117142-76117453(-)$1	311	79	89	16.5957
GCCGGGGAGG	chr12:123464926-123465211(+)$1	285	26	36	17.9787
GCUGGGCAGG	chr11:63884393-63884647(-)$1	254	101	111	16.8085
GCCGGGGAGG	chr7:100027919-100028175(+)$1	256	68	78	17.9787
gcuggggcag	chr19:10222217-10222508(+)$1	291	91	101	19.3617
GCGGGGGCGG	chr16:85646851-85647098(+)$1	247	234	244	20.0000
GCUGGGGCGG	chr19:18548350-18548616(-)$1	266	119	129	22.3404
GCUGGGGGGG	chr19:55856218-55856478(+)$1	260	194	204	20.1063
GUUGGGGAGG	chr15:80214936-80215252(-)$1	316	144	154	16.0638
GCGGGGGAGG	chrX:152938524-152938824(-)$1	300	60	70	18.4042
CCUGGGGCCG	chrX:152939467-152939804(-)$1	337	312	322	15.3191
GCUGGGGCAG	chr22:45130936-45131204(+)$1	268	129	139	19.3617
GCCGGGCCGG	chr16:31724701-31724982(+)$1	281	202	212	15.6382
gcuggcgggg	chr19:10407078-10407354(+)$1	276	109	119	16.1702
GCGGGGGCGG	chr5:138629682-138629979(+)$1	297	153	163	20.0000
gcgggcgcgg	chr5:154135495-154135744(+)$1	249	146	156	16.0638
GCUGGGCAGG	chr17:80676113-80676430(+)$1	317	166	176	16.8085
GCAGGGGCGG	chr6:111136047-111136312(-)$1	265	107	117	19.2553
GCUGGGGCGG	chr19:18548472-18548747(-)$1	275	250	260	22.3404
GCUGGGGCAG	chr1:228329203-228329462(+)$1	259	198	208	19.3617
GCUGGGCAGG	chr11:637278-637537(+)$1	259	116	126	16.8085
CCUGGGGGGG	chrX:41193840-41194081(+)$1	241	31	41	15.9574
GCGGGGGCGG	chr18:3451874-3452133(+)$1	259	164	174	20.0000
gcugaggcgg	chr19:1592441-1592724(-)$1	283	20	30	17.5531
GAUGGGGCGG	chr1:1689857-1690114(-)$1	257	143	153	17.6595
GCUGGGGAGG	chr11:557748-558010(+)$1	262	88	98	20.7446
GCGGGGGCCG	chr19:2270395-2270671(+)$1	276	105	115	17.1276
gcuggggggg	chr15:38776579-38776840(+)$1	261	51	61	20.1063
GCUGGGGCGG	chr16:448097-448371(+)$1	274	131	141	22.3404
GCUGGAGCCG	chr19:1468583-1468863(-)$1	280	74	84	15.4255
GCUGGAGGGG	chr7:1887149-1887398(-)$1	249	122	132	16.0638
GCGGGGGCCG	chr19:2270335-2270595(+)$1	260	165	175	17.1276
GCCAGGGCGG	chr1:1691151-1691409(-)$1	258	127	137	15.1063
GCGGGCGCGG	chr15:23086204-23086501(-)$1	297	75	85	16.0638
CCUGGGGCAG	chr16:89367185-89367437(-)$1	252	88	98	15.2127

#otherMatches

#Struct PSSM
dddd[ccca[	chr11:63885659-63885898(-)$1	239	97	107	19.1489
HHH{A{CCCB	chr3:195622002-195622281(-)$1	279	141	151	17.2340
eeeee22bb4	chr16:4664672-4664952(-)$1	280	109	119	15.4255
ggggggg[bb	chr5:154135352-154135593(+)$1	241	33	43	16.7021
LDDDD{GGGG	chr16:4387421-4387698(-)$1	277	59	69	19.1489
ffff]ccc]f	chr1:228329268-228329579(+)$1	311	133	143	19.3617
eeee[bba!!	chr19:1468752-1469027(-)$1	275	68	78	16.0638
hhhh[eeeee	chr19:1467818-1468101(-)$1	283	100	110	15.7446
ddd]a:::::	chr2:54197737-54198042(-)$1	305	72	82	17.9787
DDD{DDDD:I	chr19:2425975-2426264(-)$1	289	3	13	15.2127
ccc]a22eee	chr22:19704745-19705029(+)$1	284	219	229	16.7021
hh::::::FF	chr16:2059546-2059791(-)$1	245	163	173	19.4680
ff:=======	chr17:76117142-76117453(-)$1	311	79	89	16.5957
ccc[======	chr12:123464926-123465211(+)$1	285	26	36	17.9787
GGGGGGG{CC	chr11:63884393-63884647(-)$1	254	101	111	16.8085
dddffffff[	chr7:100027919-100028175(+)$1	256	68	78	17.9787
[bboooooob	chr19:10222217-10222508(+)$1	291	91	101	19.3617
ddddcccFFF	chr16:85646851-85647098(+)$1	247	234	244	20.0000
ccffffff[a	chr19:18548350-18548616(-)$1	266	119	129	22.3404
eeee:::FFF	chr19:55856218-55856478(+)$1	260	194	204	20.1063
fff::::::J	chr15:80214936-80215252(-)$1	316	144	154	16.0638
IIIIIIIIID	chrX:152938524-152938824(-)$1	300	60	70	18.4042
EEEE}DDDDe	chrX:152939467-152939804(-)$1	337	312	322	15.3191
ddd]dddd::	chr22:45130936-45131204(+)$1	268	129	139	19.3617
CCCggggggg	chr16:31724701-31724982(+)$1	281	202	212	15.6382
!!dddd[a[b	chr19:10407078-10407354(+)$1	276	109	119	16.1702
fffff"""bb	chr5:138629682-138629979(+)$1	297	153	163	20.0000
eeeee"""ee	chr5:154135495-154135744(+)$1	249	146	156	16.0638
EEEE}CCC}A	chr17:80676113-80676430(+)$1	317	166	176	16.8085
[a!!gggggg	chr6:111136047-111136312(-)$1	265	107	117	19.2553
ccffffff[a	chr19:18548472-18548747(-)$1	275	250	260	22.3404
ffff]ccc]e	chr1:228329203-228329462(+)$1	259	198	208	19.3617
hhh]aIIIII	chr11:637278-637537(+)$1	259	116	126	16.8085
vvva22====	chrX:41193840-41194081(+)$1	241	31	41	15.9574
eeeeeeeeee	chr18:3451874-3452133(+)$1	259	164	174	20.0000
CCCEEEEE{B	chr19:1592441-1592724(-)$1	283	20	30	17.5531
!!ddddbbdd	chr1:1689857-1690114(-)$1	257	143	153	17.6595
ggggggg22c	chr11:557748-558010(+)$1	262	88	98	20.7446
c[ccc[bb[f	chr19:2270395-2270671(+)$1	276	105	115	17.1276
ccc:::::::	chr15:38776579-38776840(+)$1	261	51	61	20.1063
ffffffoooo	chr16:448097-448371(+)$1	274	131	141	22.3404
abb]eeeee]	chr19:1468583-1468863(-)$1	280	74	84	15.4255
eeeeDDDDCC	chr7:1887149-1887398(-)$1	249	122	132	16.0638
JJJJJJJJ::	chr19:2270335-2270595(+)$1	260	165	175	17.1276
GG{BBKKEEE	chr1:1691151-1691409(-)$1	258	127	137	15.1063
ggggg333cc	chr15:23086204-23086501(-)$1	297	75	85	16.0638
777bb]dddd	chr16:89367185-89367437(-)$1	252	88	98	15.2127

#DB
((((.((((.	chr11:63885659-63885898(-)$1	1	97	107	19.1489
(((.(.((((	chr3:195622002-195622281(-)$1	1	141	151	17.2340
)))))..)).	chr16:4664672-4664952(-)$1	1	109	119	15.4255
(((((((.((	chr5:154135352-154135593(+)$1	1	33	43	16.7021
.((((.((((	chr16:4387421-4387698(-)$1	1	59	69	19.1489
)))).))).)	chr1:228329268-228329579(+)$1	1	133	143	19.3617
((((.(((..	chr19:1468752-1469027(-)$1	1	68	78	16.0638
((((.(((((	chr19:1467818-1468101(-)$1	1	100	110	15.7446
))).).....	chr2:54197737-54198042(-)$1	1	72	82	17.9787
(((.((((.(	chr19:2425975-2426264(-)$1	1	3	13	15.2127
))).)..)))	chr22:19704745-19705029(+)$1	1	219	229	16.7021
))......))	chr16:2059546-2059791(-)$1	1	163	173	19.4680
)).(((((((	chr17:76117142-76117453(-)$1	1	79	89	16.5957
(((.((((((	chr12:123464926-123465211(+)$1	1	26	36	17.9787
(((((((.((	chr11:63884393-63884647(-)$1	1	101	111	16.8085
)))((((((.	chr7:100027919-100028175(+)$1	1	68	78	17.9787
.((......)	chr19:10222217-10222508(+)$1	1	91	101	19.3617
))))))))))	chr16:85646851-85647098(+)$1	1	234	244	20.0000
))((((((.(	chr19:18548350-18548616(-)$1	1	119	129	22.3404
))))...)))	chr19:55856218-55856478(+)$1	1	194	204	20.1063
)))......)	chr15:80214936-80215252(-)$1	1	144	154	16.0638
((((((((((	chrX:152938524-152938824(-)$1	1	60	70	18.4042
)))).))))(	chrX:152939467-152939804(-)$1	1	312	322	15.3191
))).))))..	chr22:45130936-45131204(+)$1	1	129	139	19.3617
)))(((((((	chr16:31724701-31724982(+)$1	1	202	212	15.6382
..((((.(.(	chr19:10407078-10407354(+)$1	1	109	119	16.1702
(((((...((	chr5:138629682-138629979(+)$1	1	153	163	20.0000
(((((...((	chr5:154135495-154135744(+)$1	1	146	156	16.0638
)))).))).)	chr17:80676113-80676430(+)$1	1	166	176	16.8085
.(..((((((	chr6:111136047-111136312(-)$1	1	107	117	19.2553
))((((((.(	chr19:18548472-18548747(-)$1	1	250	260	22.3404
)))).))).)	chr1:228329203-228329462(+)$1	1	198	208	19.3617
))).)(((((	chr11:637278-637537(+)$1	1	116	126	16.8085
...)..))))	chrX:41193840-41194081(+)$1	1	31	41	15.9574
)))))(((((	chr18:3451874-3452133(+)$1	1	164	174	20.0000
((((((((.(	chr19:1592441-1592724(-)$1	1	20	30	17.5531
..((((((((	chr1:1689857-1690114(-)$1	1	143	153	17.6595
)))))))..)	chr11:557748-558010(+)$1	1	88	98	20.7446
(.(((.((.(	chr19:2270395-2270671(+)$1	1	105	115	17.1276
))).......	chr15:38776579-38776840(+)$1	1	51	61	20.1063
((((((....	chr16:448097-448371(+)$1	1	131	141	22.3404
))).))))).	chr19:1468583-1468863(-)$1	1	74	84	15.4255
))))((((((	chr7:1887149-1887398(-)$1	1	122	132	16.0638
))))))))..	chr19:2270335-2270595(+)$1	1	165	175	17.1276
((.((..(((	chr1:1691151-1691409(-)$1	1	127	137	15.1063
)))))...))	chr15:23086204-23086501(-)$1	1	75	85	16.0638
...)).))))	chr16:89367185-89367437(-)$1	1	88	98	15.2127

#PSSM
G : 0.78	g : 0.12	C : 0.08	
C : 0.82	c : 0.12	U : 0.02	A : 0.02	
U : 0.57	G : 0.17	C : 0.08	u : 0.08	A : 0.04	c : 0.02	g : 0.02	
G : 0.80	g : 0.12	A : 0.04	C : 0.02	
G : 0.87	g : 0.10	a : 0.02	
G : 0.76	g : 0.08	U : 0.04	c : 0.04	A : 0.04	C : 0.02	
G : 0.76	g : 0.12	C : 0.10	
C : 0.51	A : 0.23	G : 0.08	c : 0.06	U : 0.04	g : 0.04	a : 0.02	
G : 0.59	C : 0.12	g : 0.10	A : 0.08	U : 0.06	a : 0.02	
G : 0.87	g : 0.12	

#score	837.4468085106384
#seq	47
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_transcript_m2_run1.nuc.txt

#NT
uuuauuuuuua	chr5:74654681-74654920(+)$1	239	173	184	15.9464
uuucuuuuuuu	chr11:61133855-61134064(+)$1	209	84	95	17.4642
UUUCAUUUUUU	chr2:183821973-183822221(-)$1	248	85	96	13.5357
UAAGUUUUUAU	chr14:102551433-102551722(-)$1	289	89	100	10.6785
UUUGUUUCUGA	chr22:20958945-20959192(-)$1	247	155	166	13.7142
UUUAUUUAUUU	chr7:129815164-129815416(-)$1	252	90	101	13.0000
UUUACUUUUUA	chr2:109100704-109101016(+)$1	312	83	94	12.2857
UACGUUUUUAU	chr3:195781741-195782006(-)$1	265	74	85	10.5000
UUUGGUUCUAG	chrX:70471989-70472267(-)$1	278	199	210	9.8750
uuugugcuuug	chr1:10342481-10342773(+)$1	292	245	256	11.5714
UAUGUGUUUAG	chr1:247365051-247365309(-)$1	258	43	54	10.8571
uuucuuuuuuu	chr3:101401071-101401316(-)$1	245	91	102	17.4642
UUUCUUCUUGG	chrX:146993708-146993973(+)$1	265	88	99	11.6607
UUUGUUUUUGU	chr22:38895052-38895307(-)$1	255	62	73	18.6250
UCUGUUUUUCU	chr5:137514791-137515007(+)$1	216	182	193	15.0535
UUUGCUUUUUG	chr21:35286563-35286831(-)$1	268	250	261	15.5892
UCUGUCUUUCC	chr7:99755252-99755500(-)$1	248	95	106	10.5000
UGUGUUUCUGU	chr2:234749039-234749308(-)$1	269	59	70	11.9285
UGUGUUUUUCC	chr9:139116524-139116820(-)$1	296	48	59	14.9642
uguguguuugu	chr11:57267879-57268151(-)$1	272	118	129	12.1964
UUUGUCGUUUC	chr1:38478560-38478892(+)$1	332	154	165	11.0357
AAUGUUUUUAG	chr9:33036996-33037255(+)$1	259	5	16	9.8750
UUUUUUUUUUU	chr1:110555059-110555300(+)$1	241	79	90	17.0178
UUUGUUUUUAU	chr16:24769629-24769933(+)$1	304	14	25	18.0892
uuuguuuguuu	chr3:47129314-47129559(-)$1	245	74	85	15.8571
UUUCUUUUUUC	chr17:62496939-62497158(-)$1	219	90	101	16.9285
UUUUUUUUUGG	chr3:195788181-195788467(-)$1	286	114	125	15.3214
UGUCUUUUUGG	chr11:61179089-61179362(-)$1	273	249	260	12.9107
UUUCUGUUUUA	chr2:122161743-122162049(-)$1	306	18	29	12.8214
uuuguuuuuua	chr8:95878492-95878741(+)$1	249	23	34	18.7142
UUUUUUUUUUC	chr10:5762730-5762983(+)$1	253	36	47	16.4821
UGUGUGUUUGG	chr1:24973588-24973838(+)$1	250	98	109	11.6607
GUUGUUUUUCG	chr11:62621896-62622125(-)$1	229	139	150	13.1785
UGUGUUUUGUU	chr3:186504094-186504338(+)$1	244	44	55	12.2857
UUUAUUUGUGG	chr2:32678899-32679149(+)$1	250	227	238	11.3928
UUUGUUUAUGC	chr4:48603869-48604154(-)$1	285	164	175	14.0714
UUUGUUAUUUC	chr21:33975266-33975544(-)$1	278	107	118	15.0535
UGUGUUCUUGC	chr1:29064133-29064404(+)$1	271	209	220	11.1250
UUUGUUAUUGC	chr11:66999321-66999578(+)$1	257	242	253	13.8928
uuuuuuuuuuu	chr8:92083407-92083682(+)$1	275	185	196	17.0178
UAGGUUUUUCG	chr2:61413642-61413892(+)$1	250	41	52	10.2321
ucuguuuucuc	chr19:35648410-35648658(+)$1	248	182	193	11.3928
UUAGGUUUUUC	chr17:45736148-45736380(+)$1	232	94	105	11.1250
UUAGGUUUUAU	chr15:44920702-44920977(-)$1	275	230	241	9.9642
UUUGCUGUUUC	chr15:63915755-63916022(-)$1	267	150	161	11.3928
UUUCUUUUUCU	chr1:15890729-15891075(+)$1	346	147	158	16.0357
UGUGUUUUUCA	chr2:38973685-38973930(-)$1	245	16	27	14.4285
AUUGCUUUUCC	chr3:184035185-184035416(+)$1	231	177	188	9.6071
UUUGUGUCUGG	chr19:11030723-11030998(+)$1	275	226	237	10.6785
UUUCUUUUUUG	chr11:89938338-89938620(-)$1	282	92	103	16.9285
UUUACUUUUUA	chr12:95421954-95422204(-)$1	250	53	64	12.2857
UUUGAGUUUUC	chr6:36568928-36569163(+)$1	235	178	189	11.7500
UUUCUUUUUCU	chr20:21224851-21225126(+)$1	275	101	112	16.0357
uuuuuuuuuuu	chr19:16769976-16770196(-)$1	220	81	92	17.0178
uuuguuuguuu	chr1:113641324-113641580(+)$1	256	219	230	15.8571

#otherMatches

#Struct PSSM
fffff"""ccc	chr6:34385981-34386229(-)$1	248	99	110	12.7321
JJJJJJJJJ}D	chr5:74654681-74654920(+)$1	239	173	184	15.9464
:::::::::::	chr11:61133855-61134064(+)$1	209	84	95	17.4642
DLLLJJJJJJJ	chr2:183821973-183822221(-)$1	248	85	96	13.5357
ddd::::::::	chr14:102551433-102551722(-)$1	289	89	100	10.6785
ffffffooooo	chr22:20958945-20959192(-)$1	247	155	166	13.7142
yyyyyyyyyyy	chr7:129815164-129815416(-)$1	252	90	101	13.0000
ii:::::::::	chr2:109100704-109101016(+)$1	312	83	94	12.2857
========$$$	chr3:195781741-195782006(-)$1	265	74	85	10.5000
mmmdddd]ddd	chrX:70471989-70472267(-)$1	278	199	210	9.8750
eeeeffffff3	chr1:10342481-10342773(+)$1	292	245	256	11.5714
!bbccc[ffff	chr1:247365051-247365309(-)$1	258	43	54	10.8571
::ddddnnnnn	chr3:101401071-101401316(-)$1	245	91	102	17.4642
MMMA{CCCfff	chrX:146993708-146993973(+)$1	265	88	99	11.6607
::::::::::J	chr22:38895052-38895307(-)$1	255	62	73	18.6250
$$$appppppp	chr5:137514791-137515007(+)$1	216	182	193	15.0535
}DDDD::::::	chr21:35286563-35286831(-)$1	268	250	261	15.5892
ggggggrrrrr	chr7:99755252-99755500(-)$1	248	95	106	10.5000
FFFFFNNNNNH	chr2:234749039-234749308(-)$1	269	59	70	11.9285
"gggggggxxx	chr9:139116524-139116820(-)$1	296	48	59	14.9642
+++++++++++	chr11:57267879-57268151(-)$1	272	118	129	12.1964
mmmmbb]iiii	chr1:38478560-38478892(+)$1	332	154	165	11.0357
FKKFFFFFF::	chr9:33036996-33037255(+)$1	259	5	16	9.8750
oo=========	chr1:110555059-110555300(+)$1	241	79	90	17.0178
JJJJJJJJJJJ	chr16:24769629-24769933(+)$1	304	14	25	18.0892
===========	chr3:47129314-47129559(-)$1	245	74	85	15.8571
ffffff%%%%%	chr17:62496939-62497158(-)$1	219	90	101	16.9285
qqhhhhhhhh:	chr3:195788181-195788467(-)$1	286	114	125	15.3214
fffffdddd]b	chr11:61179089-61179362(-)$1	273	249	260	12.9107
{IIIIIIIII:	chr2:122161743-122162049(-)$1	306	18	29	12.8214
ffff:::::::	chr8:95878492-95878741(+)$1	249	23	34	18.7142
ssssssssssf	chr10:5762730-5762983(+)$1	253	36	47	16.4821
llffffffa]d	chr1:24973588-24973838(+)$1	250	98	109	11.6607
iiiiiiii::H	chr11:62621896-62622125(-)$1	229	139	150	13.1785
oooccc]ffff	chr3:186504094-186504338(+)$1	244	44	55	12.2857
==ccc333eee	chr2:32678899-32679149(+)$1	250	227	238	11.3928
ccc!!hhhhhh	chr4:48603869-48604154(-)$1	285	164	175	14.0714
=!!ccc[dddd	chr21:33975266-33975544(-)$1	278	107	118	15.0535
ggggg4444cc	chr1:29064133-29064404(+)$1	271	209	220	11.1250
c]eeeee22cc	chr11:66999321-66999578(+)$1	257	242	253	13.8928
dddd]======	chr8:92083407-92083682(+)$1	275	185	196	17.0178
!ffffff[bbn	chr2:61413642-61413892(+)$1	250	41	52	10.2321
gggg:::::::	chr19:35648410-35648658(+)$1	248	182	193	11.3928
eeeee####cc	chr17:45736148-45736380(+)$1	232	94	105	11.1250
22a]eeeee::	chr15:44920702-44920977(-)$1	275	230	241	9.9642
oooffffff22	chr15:63915755-63916022(-)$1	267	150	161	11.3928
:::::::::::	chr1:15890729-15891075(+)$1	346	147	158	16.0357
!cccnnnnncc	chr2:38973685-38973930(-)$1	245	16	27	14.4285
HHHHHHH}EEE	chr3:184035185-184035416(+)$1	231	177	188	9.6071
:::::::::EE	chr19:11030723-11030998(+)$1	275	226	237	10.6785
mmmggggggg:	chr11:89938338-89938620(-)$1	282	92	103	16.9285
EEEbb[ggggg	chr12:95421954-95422204(-)$1	250	53	64	12.2857
gggggmmmmgg	chr6:36568928-36569163(+)$1	235	178	189	11.7500
d]hhhhhhhh:	chr20:21224851-21225126(+)$1	275	101	112	16.0357
^^^^^^^^^^^	chr19:16769976-16770196(-)$1	220	81	92	17.0178
}FFFFFF}BB}	chr1:113641324-113641580(+)$1	256	219	230	15.8571

#DB
(((((...(((	chr6:34385981-34386229(-)$1	1	99	110	12.7321
))))))))).)	chr5:74654681-74654920(+)$1	1	173	184	15.9464
...........	chr11:61133855-61134064(+)$1	1	84	95	17.4642
(...(((((((	chr2:183821973-183822221(-)$1	1	85	96	13.5357
)))........	chr14:102551433-102551722(-)$1	1	89	100	10.6785
((((((.....	chr22:20958945-20959192(-)$1	1	155	166	13.7142
...........	chr7:129815164-129815416(-)$1	1	90	101	13.0000
)).........	chr2:109100704-109101016(+)$1	1	83	94	12.2857
((((((((...	chr3:195781741-195782006(-)$1	1	74	85	10.5000
...)))).)))	chrX:70471989-70472267(-)$1	1	199	210	9.8750
)))))))))).	chr1:10342481-10342773(+)$1	1	245	256	11.5714
.(((((.((((	chr1:247365051-247365309(-)$1	1	43	54	10.8571
..((((.....	chr3:101401071-101401316(-)$1	1	91	102	17.4642
...(.((((((	chrX:146993708-146993973(+)$1	1	88	99	11.6607
..........)	chr22:38895052-38895307(-)$1	1	62	73	18.6250
...(.......	chr5:137514791-137515007(+)$1	1	182	193	15.0535
.))))......	chr21:35286563-35286831(-)$1	1	250	261	15.5892
((((((.....	chr7:99755252-99755500(-)$1	1	95	106	10.5000
(((((.....(	chr2:234749039-234749308(-)$1	1	59	70	11.9285
.(((((((...	chr9:139116524-139116820(-)$1	1	48	59	14.9642
...........	chr11:57267879-57268151(-)$1	1	118	129	12.1964
....)).))))	chr1:38478560-38478892(+)$1	1	154	165	11.0357
(..((((((..	chr9:33036996-33037255(+)$1	1	5	16	9.8750
..)))))))))	chr1:110555059-110555300(+)$1	1	79	90	17.0178
(((((((((((	chr16:24769629-24769933(+)$1	1	14	25	18.0892
)))))))))))	chr3:47129314-47129559(-)$1	1	74	85	15.8571
((((((.....	chr17:62496939-62497158(-)$1	1	90	101	16.9285
..)))))))).	chr3:195788181-195788467(-)$1	1	114	125	15.3214
))))))))).)	chr11:61179089-61179362(-)$1	1	249	260	12.9107
.(((((((((.	chr2:122161743-122162049(-)$1	1	18	29	12.8214
)))).......	chr8:95878492-95878741(+)$1	1	23	34	18.7142
..........)	chr10:5762730-5762983(+)$1	1	36	47	16.4821
..))))))).)	chr1:24973588-24973838(+)$1	1	98	109	11.6607
))))))))..)	chr11:62621896-62622125(-)$1	1	139	150	13.1785
...))).))))	chr3:186504094-186504338(+)$1	1	44	55	12.2857
)))))...)))	chr2:32678899-32679149(+)$1	1	227	238	11.3928
(((..((((((	chr4:48603869-48604154(-)$1	1	164	175	14.0714
(..(((.((((	chr21:33975266-33975544(-)$1	1	107	118	15.0535
)))))....))	chr1:29064133-29064404(+)$1	1	209	220	11.1250
).)))))..))	chr11:66999321-66999578(+)$1	1	242	253	13.8928
)))).))))))	chr8:92083407-92083682(+)$1	1	185	196	17.0178
.((((((.((.	chr2:61413642-61413892(+)$1	1	41	52	10.2321
)))).......	chr19:35648410-35648658(+)$1	1	182	193	11.3928
(((((....((	chr17:45736148-45736380(+)$1	1	94	105	11.1250
..).)))))..	chr15:44920702-44920977(-)$1	1	230	241	9.9642
...))))))..	chr15:63915755-63916022(-)$1	1	150	161	11.3928
...........	chr1:15890729-15891075(+)$1	1	147	158	16.0357
.(((.....))	chr2:38973685-38973930(-)$1	1	16	27	14.4285
))))))).)))	chr3:184035185-184035416(+)$1	1	177	188	9.6071
.........))	chr19:11030723-11030998(+)$1	1	226	237	10.6785
...))))))).	chr11:89938338-89938620(-)$1	1	92	103	16.9285
(((((.(((((	chr12:95421954-95422204(-)$1	1	53	64	12.2857
(((((....))	chr6:36568928-36569163(+)$1	1	178	189	11.7500
).)))))))).	chr20:21224851-21225126(+)$1	1	101	112	16.0357
...........	chr19:16769976-16770196(-)$1	1	81	92	17.0178
.)))))).)).	chr1:113641324-113641580(+)$1	1	219	230	15.8571

#PSSM
U : 0.75	u : 0.19	A : 0.03	G : 0.01	
U : 0.55	u : 0.16	G : 0.12	A : 0.08	C : 0.03	g : 0.01	c : 0.01	
U : 0.71	u : 0.19	A : 0.05	C : 0.01	G : 0.01	
G : 0.53	C : 0.14	g : 0.10	A : 0.07	U : 0.05	c : 0.03	u : 0.03	a : 0.01	
U : 0.62	u : 0.19	C : 0.08	G : 0.05	A : 0.03	
U : 0.67	u : 0.16	G : 0.08	g : 0.03	C : 0.03	
U : 0.69	u : 0.17	C : 0.03	G : 0.03	A : 0.03	c : 0.01	
U : 0.67	u : 0.16	C : 0.07	A : 0.03	g : 0.03	G : 0.01	
U : 0.76	u : 0.17	C : 0.01	G : 0.01	c : 0.01	
U : 0.28	G : 0.21	C : 0.17	u : 0.17	A : 0.12	g : 0.01	
U : 0.23	G : 0.23	C : 0.23	u : 0.12	A : 0.10	a : 0.03	g : 0.01	c : 0.01	

#score	759.6071428571432
#seq	56
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_CDS_m3_run2.nuc.txt

#NT
UUUA	chr10:45984646-45984920(-)$1	274	10	14	12.0000
UUUA	chr4:174222955-174223312(+)$1	357	101	105	12.0000
UUUA	chr7:107545192-107545459(+)$1	267	7	11	12.0000
uuua	chr19:21560774-21561064(+)$1	290	2	6	12.0000
uuua	chr11:10876370-10876646(-)$1	276	7	11	12.0000
UUUA	chr5:68473055-68473373(+)$1	318	194	198	12.0000
UUUA	chr8:23298884-23299215(-)$1	331	177	181	12.0000
UUUA	chr3:197579388-197579705(+)$1	317	163	167	12.0000
UUUA	chr2:135677332-135677614(+)$1	282	76	80	12.0000
UUUA	chr18:9584717-9584978(-)$1	261	56	60	12.0000
uuua	chr10:75003172-75003499(-)$1	327	21	25	12.0000
UUUA	chr15:66819589-66819872(+)$1	283	22	26	12.0000
UUUA	chr2:61412888-61413152(+)$1	264	102	106	12.0000
UUUA	chr11:108005650-108005993(+)$1	343	70	74	12.0000
UUUA	chr17:56082268-56082507(-)$1	239	74	78	12.0000
UUUA	chr5:89989526-89989817(+)$1	291	72	76	12.0000
UUUA	chr8:103309067-103309298(-)$1	231	61	65	12.0000
UUUA	chr10:11527782-11528130(-)$1	348	16	20	12.0000
UUUA	chr7:157000526-157000807(+)$1	281	97	101	12.0000
uuua	chr3:133337164-133337440(-)$1	276	20	24	12.0000
UUUA	chr2:207634702-207634955(+)$1	253	18	22	12.0000
UUUA	chr1:29342159-29342408(+)$1	249	31	35	12.0000
UUUA	chr11:13734512-13734743(+)$1	231	75	79	12.0000
UUUA	chr1:35577402-35577697(+)$1	295	222	226	12.0000
UUUA	chr12:69152749-69153040(+)$1	291	76	80	12.0000
UUUA	chr6:90411386-90411732(-)$1	346	56	60	12.0000
UUUA	chr5:179048138-179048364(-)$1	226	128	132	12.0000
UUUA	chr17:57958353-57958675(-)$1	322	45	49	12.0000
UUUA	chr9:6477697-6477989(+)$1	292	62	66	12.0000
uuua	chr17:62914700-62914993(-)$1	293	0	4	12.0000
UUUA	chr15:57213181-57213510(+)$1	329	165	169	12.0000
UUUA	chr6:97613130-97613391(-)$1	261	21	25	12.0000
UUUA	chr6:112397367-112397636(-)$1	269	5	9	12.0000
UUUA	chr6:99852308-99852522(-)$1	214	2	6	12.0000
UUUA	chr10:94392339-94392661(+)$1	322	32	36	12.0000
UUUA	chr18:2577754-2578067(+)$1	313	118	122	12.0000
UUUA	chr6:127636029-127636393(-)$1	364	54	58	12.0000
UUUA	chr1:51826925-51827285(-)$1	360	117	121	12.0000
UUUA	chr1:21267557-21267853(-)$1	296	22	26	12.0000
UUUA	chr2:100024314-100024603(-)$1	289	210	214	12.0000
UUUA	chr12:62715294-62715557(+)$1	263	80	84	12.0000
UUUA	chr10:133757270-133757604(+)$1	334	196	200	12.0000
UUUA	chr6:132014655-132015016(+)$1	361	122	126	12.0000
UUUA	chr15:63935144-63935442(-)$1	298	12	16	12.0000
UUUA	chr8:68076415-68076736(+)$1	321	124	128	12.0000
UUUA	chr21:40670232-40670471(-)$1	239	70	74	12.0000
UUUA	chr4:74042816-74043207(-)$1	391	94	98	12.0000
UUUA	chr3:44819554-44819846(+)$1	292	16	20	12.0000
UUUA	chr10:69647001-69647278(+)$1	277	52	56	12.0000
UUUA	chr7:148514783-148515087(-)$1	304	143	147	12.0000
UUUA	chr1:6601722-6602007(-)$1	285	5	9	12.0000
UUUA	chr15:22848738-22848993(+)$1	255	34	38	12.0000
UUUA	chr6:101090263-101090557(-)$1	294	151	155	12.0000
UUUA	chr11:47813262-47813589(-)$1	327	39	43	12.0000
UUUA	chr6:10958899-10959149(+)$1	250	42	46	12.0000
UUUA	chr14:50146276-50146523(-)$1	247	136	140	12.0000
UUUA	chr3:196986942-196987263(-)$1	321	4	8	12.0000
UUUA	chr14:50923055-50923336(-)$1	281	115	119	12.0000
UUUA	chr12:94794643-94794933(-)$1	290	52	56	12.0000
UUUA	chr2:223493346-223493657(-)$1	311	26	30	12.0000
UUUA	chr4:502638-502967(+)$1	329	89	93	12.0000
UUUA	chr13:39602194-39602480(-)$1	286	62	66	12.0000
UUUA	chr4:144127272-144127554(+)$1	282	93	97	12.0000
UUUA	chr10:32132204-32132490(-)$1	286	176	180	12.0000
UUUA	chr15:80423576-80423861(+)$1	285	79	83	12.0000
UUUA	chr11:85345156-85345463(+)$1	307	172	176	12.0000
UUUA	chr2:114500064-114500381(-)$1	317	121	125	12.0000
UUUA	chr19:30503347-30503637(+)$1	290	107	111	12.0000
UUUA	chr15:49327743-49328081(-)$1	338	14	18	12.0000
UUUA	chr11:85689017-85689290(-)$1	273	33	37	12.0000
UUUA	chr5:89988346-89988631(+)$1	285	19	23	12.0000
UUUA	chr2:203152322-203152672(+)$1	350	4	8	12.0000
UUUA	chr12:72008676-72009099(-)$1	423	45	49	12.0000
UUUA	chr14:91936975-91937290(-)$1	315	126	130	12.0000
UUUA	chr17:58011695-58012002(+)$1	307	31	35	12.0000
UUUA	chr1:38046760-38047075(-)$1	315	158	162	12.0000
UUUA	chr1:46099805-46100136(-)$1	331	157	161	12.0000
UUUA	chr1:244583487-244583739(-)$1	252	70	74	12.0000
UUUA	chr10:129921000-129921265(-)$1	265	204	208	12.0000
UUUA	chr2:29129340-29129623(+)$1	283	41	45	12.0000
UUUA	chr19:32871311-32871706(+)$1	395	106	110	12.0000
UUUA	chr3:122942297-122942559(+)$1	262	21	25	12.0000
UUUA	chr15:60745622-60745892(-)$1	270	10	14	12.0000
UUUA	chr3:128890029-128890289(-)$1	260	8	12	12.0000
UUUA	chr3:72861836-72862124(-)$1	288	1	5	12.0000
UUUA	chr1:111717464-111717774(+)$1	310	222	226	12.0000
UUUA	chr8:30924577-30924847(+)$1	270	138	142	12.0000
UUUA	chr4:68527741-68527968(-)$1	227	75	79	12.0000
UUUA	chr2:203157494-203157739(+)$1	245	140	144	12.0000
UUUA	chr2:33036184-33036498(+)$1	314	188	192	12.0000
uuua	chr8:110348129-110348478(+)$1	349	22	26	12.0000

#otherMatches

#Struct PSSM
ffff	chr3:33612074-33612291(-)$1	217	79	83	12.0000
%%%g	chr10:45984646-45984920(-)$1	274	10	14	12.0000
7===	chr4:174222955-174223312(+)$1	357	101	105	12.0000
hmmm	chr7:107545192-107545459(+)$1	267	7	11	12.0000
::::	chr19:21560774-21561064(+)$1	290	2	6	12.0000
gggm	chr11:10876370-10876646(-)$1	276	7	11	12.0000
c>>>	chr5:68473055-68473373(+)$1	318	194	198	12.0000
JJJ:	chr8:23298884-23299215(-)$1	331	177	181	12.0000
"""e	chr3:197579388-197579705(+)$1	317	163	167	12.0000
"""d	chr2:135677332-135677614(+)$1	282	76	80	12.0000
qqcc	chr18:9584717-9584978(-)$1	261	56	60	12.0000
GGGg	chr10:75003172-75003499(-)$1	327	21	25	12.0000
rrrr	chr15:66819589-66819872(+)$1	283	22	26	12.0000
gggg	chr2:61412888-61413152(+)$1	264	102	106	12.0000
::JJ	chr11:108005650-108005993(+)$1	343	70	74	12.0000
hhhh	chr17:56082268-56082507(-)$1	239	74	78	12.0000
ttgg	chr5:89989526-89989817(+)$1	291	72	76	12.0000
FFFF	chr8:103309067-103309298(-)$1	231	61	65	12.0000
c]dd	chr10:11527782-11528130(-)$1	348	16	20	12.0000
eeeq	chr7:157000526-157000807(+)$1	281	97	101	12.0000
oooe	chr3:133337164-133337440(-)$1	276	20	24	12.0000
====	chr2:207634702-207634955(+)$1	253	18	22	12.0000
====	chr1:29342159-29342408(+)$1	249	31	35	12.0000
KKCC	chr11:13734512-13734743(+)$1	231	75	79	12.0000
nncc	chr1:35577402-35577697(+)$1	295	222	226	12.0000
!!ff	chr12:69152749-69153040(+)$1	291	76	80	12.0000
e:::	chr6:90411386-90411732(-)$1	346	56	60	12.0000
cccd	chr5:179048138-179048364(-)$1	226	128	132	12.0000
::::	chr17:57958353-57958675(-)$1	322	45	49	12.0000
::::	chr9:6477697-6477989(+)$1	292	62	66	12.0000
:III	chr17:62914700-62914993(-)$1	293	0	4	12.0000
]ccc	chr15:57213181-57213510(+)$1	329	165	169	12.0000
22bb	chr6:97613130-97613391(-)$1	261	21	25	12.0000
::::	chr6:112397367-112397636(-)$1	269	5	9	12.0000
:fff	chr6:99852308-99852522(-)$1	214	2	6	12.0000
::::	chr10:94392339-94392661(+)$1	322	32	36	12.0000
HHHH	chr18:2577754-2578067(+)$1	313	118	122	12.0000
oooo	chr6:127636029-127636393(-)$1	364	54	58	12.0000
====	chr1:51826925-51827285(-)$1	360	117	121	12.0000
ddd[	chr1:21267557-21267853(-)$1	296	22	26	12.0000
iipp	chr2:100024314-100024603(-)$1	289	210	214	12.0000
dmmm	chr12:62715294-62715557(+)$1	263	80	84	12.0000
CCCZ	chr10:133757270-133757604(+)$1	334	196	200	12.0000
b!!e	chr6:132014655-132015016(+)$1	361	122	126	12.0000
EMMM	chr15:63935144-63935442(-)$1	298	12	16	12.0000
IIII	chr8:68076415-68076736(+)$1	321	124	128	12.0000
eedd	chr21:40670232-40670471(-)$1	239	70	74	12.0000
fffm	chr4:74042816-74043207(-)$1	391	94	98	12.0000
rrrr	chr3:44819554-44819846(+)$1	292	16	20	12.0000
gggg	chr10:69647001-69647278(+)$1	277	52	56	12.0000
ffff	chr7:148514783-148515087(-)$1	304	143	147	12.0000
::::	chr1:6601722-6602007(-)$1	285	5	9	12.0000
eeee	chr15:22848738-22848993(+)$1	255	34	38	12.0000
gggg	chr6:101090263-101090557(-)$1	294	151	155	12.0000
333h	chr11:47813262-47813589(-)$1	327	39	43	12.0000
dppp	chr6:10958899-10959149(+)$1	250	42	46	12.0000
f!!b	chr14:50146276-50146523(-)$1	247	136	140	12.0000
e[bb	chr3:196986942-196987263(-)$1	321	4	8	12.0000
===5	chr14:50923055-50923336(-)$1	281	115	119	12.0000
::::	chr12:94794643-94794933(-)$1	290	52	56	12.0000
JJNN	chr2:223493346-223493657(-)$1	311	26	30	12.0000
ggg2	chr4:502638-502967(+)$1	329	89	93	12.0000
::::	chr13:39602194-39602480(-)$1	286	62	66	12.0000
qqqq	chr4:144127272-144127554(+)$1	282	93	97	12.0000
333e	chr10:32132204-32132490(-)$1	286	176	180	12.0000
d&&&	chr15:80423576-80423861(+)$1	285	79	83	12.0000
gmmm	chr11:85345156-85345463(+)$1	307	172	176	12.0000
::::	chr2:114500064-114500381(-)$1	317	121	125	12.0000
[fff	chr19:30503347-30503637(+)$1	290	107	111	12.0000
::::	chr15:49327743-49328081(-)$1	338	14	18	12.0000
HHH{	chr11:85689017-85689290(-)$1	273	33	37	12.0000
####	chr5:89988346-89988631(+)$1	285	19	23	12.0000
::::	chr2:203152322-203152672(+)$1	350	4	8	12.0000
cc]b	chr12:72008676-72009099(-)$1	423	45	49	12.0000
uuuu	chr14:91936975-91937290(-)$1	315	126	130	12.0000
e!!g	chr17:58011695-58012002(+)$1	307	31	35	12.0000
66ee	chr1:38046760-38047075(-)$1	315	158	162	12.0000
33ee	chr1:46099805-46100136(-)$1	331	157	161	12.0000
wwww	chr1:244583487-244583739(-)$1	252	70	74	12.0000
xxxx	chr10:129921000-129921265(-)$1	265	204	208	12.0000
e:::	chr2:29129340-29129623(+)$1	283	41	45	12.0000
dd[c	chr19:32871311-32871706(+)$1	395	106	110	12.0000
FKKE	chr3:122942297-122942559(+)$1	262	21	25	12.0000
::::	chr15:60745622-60745892(-)$1	270	10	14	12.0000
pppp	chr3:128890029-128890289(-)$1	260	8	12	12.0000
::::	chr3:72861836-72862124(-)$1	288	1	5	12.0000
!iii	chr1:111717464-111717774(+)$1	310	222	226	12.0000
dddd	chr8:30924577-30924847(+)$1	270	138	142	12.0000
gggg	chr4:68527741-68527968(-)$1	227	75	79	12.0000
IZZZ	chr2:203157494-203157739(+)$1	245	140	144	12.0000
FFFF	chr2:33036184-33036498(+)$1	314	188	192	12.0000
eeeo	chr8:110348129-110348478(+)$1	349	22	26	12.0000

#DB
((((	chr3:33612074-33612291(-)$1	1	79	83	12.0000
...(	chr10:45984646-45984920(-)$1	1	10	14	12.0000
.)))	chr4:174222955-174223312(+)$1	1	101	105	12.0000
(...	chr7:107545192-107545459(+)$1	1	7	11	12.0000
....	chr19:21560774-21561064(+)$1	1	2	6	12.0000
(((.	chr11:10876370-10876646(-)$1	1	7	11	12.0000
)...	chr5:68473055-68473373(+)$1	1	194	198	12.0000
))).	chr8:23298884-23299215(-)$1	1	177	181	12.0000
...(	chr3:197579388-197579705(+)$1	1	163	167	12.0000
...(	chr2:135677332-135677614(+)$1	1	76	80	12.0000
..))	chr18:9584717-9584978(-)$1	1	56	60	12.0000
((((	chr10:75003172-75003499(-)$1	1	21	25	12.0000
....	chr15:66819589-66819872(+)$1	1	22	26	12.0000
((((	chr2:61412888-61413152(+)$1	1	102	106	12.0000
..((	chr11:108005650-108005993(+)$1	1	70	74	12.0000
((((	chr17:56082268-56082507(-)$1	1	74	78	12.0000
..))	chr5:89989526-89989817(+)$1	1	72	76	12.0000
((((	chr8:103309067-103309298(-)$1	1	61	65	12.0000
).))	chr10:11527782-11528130(-)$1	1	16	20	12.0000
(((.	chr7:157000526-157000807(+)$1	1	97	101	12.0000
...)	chr3:133337164-133337440(-)$1	1	20	24	12.0000
((((	chr2:207634702-207634955(+)$1	1	18	22	12.0000
))))	chr1:29342159-29342408(+)$1	1	31	35	12.0000
..((	chr11:13734512-13734743(+)$1	1	75	79	12.0000
..))	chr1:35577402-35577697(+)$1	1	222	226	12.0000
..((	chr12:69152749-69153040(+)$1	1	76	80	12.0000
)...	chr6:90411386-90411732(-)$1	1	56	60	12.0000
))))	chr5:179048138-179048364(-)$1	1	128	132	12.0000
....	chr17:57958353-57958675(-)$1	1	45	49	12.0000
....	chr9:6477697-6477989(+)$1	1	62	66	12.0000
.(((	chr17:62914700-62914993(-)$1	1	0	4	12.0000
.)))	chr15:57213181-57213510(+)$1	1	165	169	12.0000
..))	chr6:97613130-97613391(-)$1	1	21	25	12.0000
....	chr6:112397367-112397636(-)$1	1	5	9	12.0000
.(((	chr6:99852308-99852522(-)$1	1	2	6	12.0000
....	chr10:94392339-94392661(+)$1	1	32	36	12.0000
((((	chr18:2577754-2578067(+)$1	1	118	122	12.0000
....	chr6:127636029-127636393(-)$1	1	54	58	12.0000
((((	chr1:51826925-51827285(-)$1	1	117	121	12.0000
(((.	chr1:21267557-21267853(-)$1	1	22	26	12.0000
((..	chr2:100024314-100024603(-)$1	1	210	214	12.0000
(...	chr12:62715294-62715557(+)$1	1	80	84	12.0000
))).	chr10:133757270-133757604(+)$1	1	196	200	12.0000
(..(	chr6:132014655-132015016(+)$1	1	122	126	12.0000
(...	chr15:63935144-63935442(-)$1	1	12	16	12.0000
((((	chr8:68076415-68076736(+)$1	1	124	128	12.0000
))))	chr21:40670232-40670471(-)$1	1	70	74	12.0000
(((.	chr4:74042816-74043207(-)$1	1	94	98	12.0000
....	chr3:44819554-44819846(+)$1	1	16	20	12.0000
((((	chr10:69647001-69647278(+)$1	1	52	56	12.0000
((((	chr7:148514783-148515087(-)$1	1	143	147	12.0000
....	chr1:6601722-6602007(-)$1	1	5	9	12.0000
((((	chr15:22848738-22848993(+)$1	1	34	38	12.0000
((((	chr6:101090263-101090557(-)$1	1	151	155	12.0000
...)	chr11:47813262-47813589(-)$1	1	39	43	12.0000
(...	chr6:10958899-10959149(+)$1	1	42	46	12.0000
(..(	chr14:50146276-50146523(-)$1	1	136	140	12.0000
(.((	chr3:196986942-196987263(-)$1	1	4	8	12.0000
))).	chr14:50923055-50923336(-)$1	1	115	119	12.0000
....	chr12:94794643-94794933(-)$1	1	52	56	12.0000
((..	chr2:223493346-223493657(-)$1	1	26	30	12.0000
))).	chr4:502638-502967(+)$1	1	89	93	12.0000
....	chr13:39602194-39602480(-)$1	1	62	66	12.0000
....	chr4:144127272-144127554(+)$1	1	93	97	12.0000
...)	chr10:32132204-32132490(-)$1	1	176	180	12.0000
(...	chr15:80423576-80423861(+)$1	1	79	83	12.0000
(...	chr11:85345156-85345463(+)$1	1	172	176	12.0000
....	chr2:114500064-114500381(-)$1	1	121	125	12.0000
.(((	chr19:30503347-30503637(+)$1	1	107	111	12.0000
....	chr15:49327743-49328081(-)$1	1	14	18	12.0000
(((.	chr11:85689017-85689290(-)$1	1	33	37	12.0000
....	chr5:89988346-89988631(+)$1	1	19	23	12.0000
....	chr2:203152322-203152672(+)$1	1	4	8	12.0000
)).)	chr12:72008676-72009099(-)$1	1	45	49	12.0000
....	chr14:91936975-91937290(-)$1	1	126	130	12.0000
(..(	chr17:58011695-58012002(+)$1	1	31	35	12.0000
..))	chr1:38046760-38047075(-)$1	1	158	162	12.0000
..))	chr1:46099805-46100136(-)$1	1	157	161	12.0000
....	chr1:244583487-244583739(-)$1	1	70	74	12.0000
....	chr10:129921000-129921265(-)$1	1	204	208	12.0000
)...	chr2:29129340-29129623(+)$1	1	41	45	12.0000
((.(	chr19:32871311-32871706(+)$1	1	106	110	12.0000
(..(	chr3:122942297-122942559(+)$1	1	21	25	12.0000
....	chr15:60745622-60745892(-)$1	1	10	14	12.0000
....	chr3:128890029-128890289(-)$1	1	8	12	12.0000
....	chr3:72861836-72862124(-)$1	1	1	5	12.0000
.(((	chr1:111717464-111717774(+)$1	1	222	226	12.0000
((((	chr8:30924577-30924847(+)$1	1	138	142	12.0000
((((	chr4:68527741-68527968(-)$1	1	75	79	12.0000
)...	chr2:203157494-203157739(+)$1	1	140	144	12.0000
((((	chr2:33036184-33036498(+)$1	1	188	192	12.0000
(((.	chr8:110348129-110348478(+)$1	1	22	26	12.0000

#PSSM
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
A : 0.93	a : 0.06	

#score	1104.0000000000005
#seq	92
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_transcript_m3_run2.nuc.txt

#NT
gcugu	chr13:113400176-113400511(+)$1	335	254	259	15.0000
gcugu	chr10:65176829-65177131(-)$1	302	205	210	15.0000
GCUGU	chr19:1415888-1416170(+)$1	282	141	146	15.0000
GCUGU	chr4:1222926-1223178(-)$1	252	9	14	15.0000
GCUGU	chr16:81523027-81523251(+)$1	224	101	106	15.0000
GCUGU	chr16:78551253-78551509(+)$1	256	121	126	15.0000
GCUGU	chr19:576959-577210(+)$1	251	55	60	15.0000
gcugu	chr3:128486905-128487298(+)$1	393	179	184	15.0000
GCUGU	chr16:50632846-50633069(+)$1	223	212	217	15.0000
GCUGU	chr17:1302886-1303137(-)$1	251	115	120	15.0000
GCUGU	chr2:240300990-240301275(-)$1	285	113	118	15.0000
GCUGU	chr10:114891412-114891642(+)$1	230	119	124	15.0000
GCUGU	chr1:2164745-2165013(+)$1	268	58	63	15.0000
GCUGU	chr16:88568029-88568269(+)$1	240	233	238	15.0000
GCUGU	chr19:954031-954283(+)$1	252	104	109	15.0000
GCUGU	chr19:1035154-1035425(+)$1	271	174	179	15.0000
GCUGU	chr2:129029933-129030190(-)$1	257	54	59	15.0000
GCUGU	chr6:144655547-144655836(+)$1	289	217	222	15.0000
gcugu	chr16:50606404-50606720(+)$1	316	145	150	15.0000
gcugu	chr2:236986225-236986495(+)$1	270	249	254	15.0000
GCUGU	chr2:10306584-10306878(+)$1	294	40	45	15.0000
GCUGU	chr5:34191252-34191529(-)$1	277	75	80	15.0000
GCUGU	chr5:74162099-74162359(-)$1	260	254	259	15.0000
GCUGU	chr2:236479849-236480136(+)$1	287	133	138	15.0000
GCUGU	chr2:62940022-62940279(+)$1	257	116	121	15.0000
GCUGU	chr2:65631688-65632040(-)$1	352	26	31	15.0000
GCUGU	chr2:134878958-134879248(+)$1	290	0	5	15.0000
GCUGU	chr7:158239057-158239306(-)$1	249	55	60	15.0000
GCUGU	chr8:144678733-144678978(-)$1	245	30	35	15.0000
GCUGU	chr15:51386066-51386330(+)$1	264	192	197	15.0000
GCUGU	chr2:236672546-236672909(+)$1	363	90	95	15.0000
GCUGU	chr16:2568577-2568850(+)$1	273	14	19	15.0000
GCUGU	chr21:40178139-40178440(+)$1	301	159	164	15.0000
GCUGU	chr16:87881839-87882074(-)$1	235	34	39	15.0000
GCUGU	chr1:165814512-165814809(+)$1	297	80	85	15.0000
gcugU	chr2:11465026-11465333(-)$1	307	91	96	15.0000
GCUGU	chr2:236486208-236486470(+)$1	262	27	32	15.0000
GCUGU	chr2:236451832-236452154(+)$1	322	221	226	15.0000
gcugu	chr8:97516836-97517086(+)$1	250	215	220	15.0000
GCUGU	chr7:47603181-47603487(-)$1	306	215	220	15.0000
GCUGU	chr13:50698853-50699121(-)$1	268	109	114	15.0000
gcugu	chr16:81518601-81518818(+)$1	217	93	98	15.0000
GCUGU	chr17:55364694-55364951(+)$1	257	103	108	15.0000
GCUGU	chr2:235863676-235863893(+)$1	217	22	27	15.0000
GCUGU	chr22:37957845-37958108(+)$1	263	191	196	15.0000
GCUGU	chr1:1821605-1821847(-)$1	242	202	207	15.0000
GCUGU	chr20:43017027-43017305(+)$1	278	162	167	15.0000
GCUGU	chr7:150797215-150797449(+)$1	234	90	95	15.0000
GCUGU	chr21:47559412-47559668(-)$1	256	53	58	15.0000
GCUGU	chr1:246488927-246489207(-)$1	280	23	28	15.0000

#otherMatches

#Struct PSSM
:::::	chr6:37797465-37797729(+)$1	264	46	51	15.0000
hhhhh	chr13:113400176-113400511(+)$1	335	254	259	15.0000
dddd]	chr10:65176829-65177131(-)$1	302	205	210	15.0000
eee!!	chr19:1415888-1416170(+)$1	282	141	146	15.0000
DDD::	chr4:1222926-1223178(-)$1	252	9	14	15.0000
]hhhh	chr16:81523027-81523251(+)$1	224	101	106	15.0000
hhhh]	chr16:78551253-78551509(+)$1	256	121	126	15.0000
dddhh	chr19:576959-577210(+)$1	251	55	60	15.0000
fffff	chr3:128486905-128487298(+)$1	393	179	184	15.0000
FFFZZ	chr16:50632846-50633069(+)$1	223	212	217	15.0000
iiiii	chr17:1302886-1303137(-)$1	251	115	120	15.0000
DDDD{	chr2:240300990-240301275(-)$1	285	113	118	15.0000
c!!bb	chr10:114891412-114891642(+)$1	230	119	124	15.0000
{BB::	chr1:2164745-2165013(+)$1	268	58	63	15.0000
hhhhh	chr16:88568029-88568269(+)$1	240	233	238	15.0000
ccc]a	chr19:954031-954283(+)$1	252	104	109	15.0000
fffff	chr19:1035154-1035425(+)$1	271	174	179	15.0000
ffffq	chr2:129029933-129030190(-)$1	257	54	59	15.0000
IIIII	chr6:144655547-144655836(+)$1	289	217	222	15.0000
BB:ee	chr16:50606404-50606720(+)$1	316	145	150	15.0000
CCCYY	chr2:236986225-236986495(+)$1	270	249	254	15.0000
HHH{F	chr2:10306584-10306878(+)$1	294	40	45	15.0000
2bb]a	chr5:34191252-34191529(-)$1	277	75	80	15.0000
ccc::	chr5:74162099-74162359(-)$1	260	254	259	15.0000
ddddb	chr2:236479849-236480136(+)$1	287	133	138	15.0000
eeedd	chr2:62940022-62940279(+)$1	257	116	121	15.0000
eeeee	chr2:65631688-65632040(-)$1	352	26	31	15.0000
::GGG	chr2:134878958-134879248(+)$1	290	0	5	15.0000
ccc!!	chr7:158239057-158239306(-)$1	249	55	60	15.0000
ndddd	chr8:144678733-144678978(-)$1	245	30	35	15.0000
hhhhh	chr15:51386066-51386330(+)$1	264	192	197	15.0000
eeeee	chr2:236672546-236672909(+)$1	363	90	95	15.0000
EEEII	chr16:2568577-2568850(+)$1	273	14	19	15.0000
ff[dd	chr21:40178139-40178440(+)$1	301	159	164	15.0000
GGGGG	chr16:87881839-87882074(-)$1	235	34	39	15.0000
ddd::	chr1:165814512-165814809(+)$1	297	80	85	15.0000
JJJJJ	chr2:11465026-11465333(-)$1	307	91	96	15.0000
gggg[	chr2:236486208-236486470(+)$1	262	27	32	15.0000
GGGGG	chr2:236451832-236452154(+)$1	322	221	226	15.0000
CC}EE	chr8:97516836-97517086(+)$1	250	215	220	15.0000
ddddd	chr7:47603181-47603487(-)$1	306	215	220	15.0000
mmmbb	chr13:50698853-50699121(-)$1	268	109	114	15.0000
4ccc]	chr16:81518601-81518818(+)$1	217	93	98	15.0000
f]ccc	chr17:55364694-55364951(+)$1	257	103	108	15.0000
d]eee	chr2:235863676-235863893(+)$1	217	22	27	15.0000
EEHHH	chr22:37957845-37958108(+)$1	263	191	196	15.0000
coooo	chr1:1821605-1821847(-)$1	242	202	207	15.0000
c[a[b	chr20:43017027-43017305(+)$1	278	162	167	15.0000
mmccc	chr7:150797215-150797449(+)$1	234	90	95	15.0000
^^^^^	chr21:47559412-47559668(-)$1	256	53	58	15.0000
cc::H	chr1:246488927-246489207(-)$1	280	23	28	15.0000

#DB
.....	chr6:37797465-37797729(+)$1	1	46	51	15.0000
(((((	chr13:113400176-113400511(+)$1	1	254	259	15.0000
)))).	chr10:65176829-65177131(-)$1	1	205	210	15.0000
(((..	chr19:1415888-1416170(+)$1	1	141	146	15.0000
(((..	chr4:1222926-1223178(-)$1	1	9	14	15.0000
.))))	chr16:81523027-81523251(+)$1	1	101	106	15.0000
)))).	chr16:78551253-78551509(+)$1	1	121	126	15.0000
)))((	chr19:576959-577210(+)$1	1	55	60	15.0000
(((((	chr3:128486905-128487298(+)$1	1	179	184	15.0000
)))..	chr16:50632846-50633069(+)$1	1	212	217	15.0000
)))))	chr17:1302886-1303137(-)$1	1	115	120	15.0000
((((.	chr2:240300990-240301275(-)$1	1	113	118	15.0000
(..((	chr10:114891412-114891642(+)$1	1	119	124	15.0000
.((..	chr1:2164745-2165013(+)$1	1	58	63	15.0000
)))))	chr16:88568029-88568269(+)$1	1	233	238	15.0000
))).)	chr19:954031-954283(+)$1	1	104	109	15.0000
)))))	chr19:1035154-1035425(+)$1	1	174	179	15.0000
((((.	chr2:129029933-129030190(-)$1	1	54	59	15.0000
)))))	chr6:144655547-144655836(+)$1	1	217	222	15.0000
((.((	chr16:50606404-50606720(+)$1	1	145	150	15.0000
)))..	chr2:236986225-236986495(+)$1	1	249	254	15.0000
(((.(	chr2:10306584-10306878(+)$1	1	40	45	15.0000
.)).)	chr5:34191252-34191529(-)$1	1	75	80	15.0000
)))..	chr5:74162099-74162359(-)$1	1	254	259	15.0000
)))))	chr2:236479849-236480136(+)$1	1	133	138	15.0000
)))((	chr2:62940022-62940279(+)$1	1	116	121	15.0000
(((((	chr2:65631688-65632040(-)$1	1	26	31	15.0000
..(((	chr2:134878958-134879248(+)$1	1	0	5	15.0000
(((..	chr7:158239057-158239306(-)$1	1	55	60	15.0000
.))))	chr8:144678733-144678978(-)$1	1	30	35	15.0000
)))))	chr15:51386066-51386330(+)$1	1	192	197	15.0000
)))))	chr2:236672546-236672909(+)$1	1	90	95	15.0000
(((((	chr16:2568577-2568850(+)$1	1	14	19	15.0000
((.((	chr21:40178139-40178440(+)$1	1	159	164	15.0000
(((((	chr16:87881839-87882074(-)$1	1	34	39	15.0000
)))..	chr1:165814512-165814809(+)$1	1	80	85	15.0000
(((((	chr2:11465026-11465333(-)$1	1	91	96	15.0000
((((.	chr2:236486208-236486470(+)$1	1	27	32	15.0000
)))))	chr2:236451832-236452154(+)$1	1	221	226	15.0000
)).))	chr8:97516836-97517086(+)$1	1	215	220	15.0000
))(((	chr7:47603181-47603487(-)$1	1	215	220	15.0000
...))	chr13:50698853-50699121(-)$1	1	109	114	15.0000
.))).	chr16:81518601-81518818(+)$1	1	93	98	15.0000
).)))	chr17:55364694-55364951(+)$1	1	103	108	15.0000
).)))	chr2:235863676-235863893(+)$1	1	22	27	15.0000
)))))	chr22:37957845-37958108(+)$1	1	191	196	15.0000
(....	chr1:1821605-1821847(-)$1	1	202	207	15.0000
(.(.(	chr20:43017027-43017305(+)$1	1	162	167	15.0000
..)))	chr7:150797215-150797449(+)$1	1	90	95	15.0000
.....	chr21:47559412-47559668(-)$1	1	53	58	15.0000
))..(	chr1:246488927-246489207(-)$1	1	23	28	15.0000

#PSSM
G : 0.84	g : 0.15	
C : 0.84	c : 0.15	
U : 0.84	u : 0.15	
G : 0.84	g : 0.15	
U : 0.86	u : 0.13	

#score	765.0000000000001
#seq	51
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_UTR_m1_run2.nuc.txt

#NT
gggcggcgggcggcgggc	chr6:160769216-160769475(+)$1	259	212	230	29.7843
GGGCGGCGGGGGCAGGAC	chr1:202776256-202776489(-)$1	233	0	18	22.1372
ggcugccgggcgggggcc	chr4:183838131-183838411(-)$1	280	38	56	20.4705
gggcggcgggcggagggg	chr2:106361296-106361576(+)$1	280	95	113	30.5686
gcgcgcagggcgggggag	chr13:114239466-114239728(+)$1	262	43	61	23.1176
GGGCGGGAUGCGGAGGGG	chr8:145064811-145065104(+)$1	293	145	163	21.5490
GGGUGGGGGGUGGGGGUG	chr6:37142127-37142421(+)$1	294	19	37	25.4705
GGGUGGGAGGCGGGGCUG	chr19:1472442-1472688(-)$1	246	90	108	19.9803
ggguggcgggcgggcgga	chr3:185542660-185542935(-)$1	275	63	81	26.0588
GGGAGGUGGGAGGCGGAC	chr16:75298581-75298849(-)$1	268	10	28	20.7647
GGGCAGCUGGCGGGGACC	chr19:2231956-2232235(+)$1	279	167	185	19.9803
gggcagcgggcggcugag	chr12:131356688-131356951(+)$1	263	88	106	22.7254
cggcggcggcccgggggA	chr5:176873691-176874001(-)$1	310	130	148	19.2941
GUGCGGGGGGGGAGGGGG	chr6:149639327-149639627(+)$1	300	78	96	22.0392
gggcggggggccggggcg	chr17:38278461-38278739(+)$1	278	8	26	27.5294
GGGGCGGGGACGGGGGAG	chr19:42757907-42758149(-)$1	242	47	65	20.9607
Aggcggggggcggcgggg	chr16:53164973-53165237(+)$1	264	178	196	25.4705
GGGCGGAAGGCGGAggcc	chr2:174828659-174828909(-)$1	250	34	52	23.0196
GGGAGGCGGGCGGGCGGA	chr22:31741769-31742094(-)$1	325	239	257	25.5686
GCGGGGAGGGUGGGGGGU	chr12:49414181-49414448(-)$1	267	75	93	20.7647
GGGCCGGGGUCGGGGGUC	chr19:1104352-1104652(+)$1	300	78	96	21.9411
GGCCAGCGGGAGGUGGGG	chr16:73081628-73081906(-)$1	278	104	122	19.5882
GAGCAGAGGGCGGGGGAA	chr11:12696159-12696432(+)$1	273	147	165	21.5490
UGGCGGCGGGGGCGGGGG	chr4:124319278-124319537(+)$1	259	229	247	22.6274
gcgcggcggggggagggg	chr19:42788118-42788373(+)$1	255	60	78	24.3921
GCGCGGCGGGUGGGAGGC	chr12:104531186-104531512(-)$1	326	113	131	23.1176
GGGCGGGUGGCUGGGGAG	chr16:4661246-4661498(-)$1	252	98	116	23.9019
gggcagcgggcgagagac	chr3:14989004-14989274(-)$1	270	0	18	21.0588
GCGCGGCGGGAGCGGGCG	chr11:842829-843068(+)$1	239	43	61	22.2352
gggcggcggggugggcgg	chr12:58149062-58149371(-)$1	309	258	276	22.3333
ggggggagggcgggcggg	chr3:100428660-100428952(+)$1	292	82	100	25.8627
GGGCGGGGGGAGGUGGCU	chr14:32546353-32546620(+)$1	267	109	127	23.7058
GGGGGGCUggcggcggcg	chr1:155532433-155532695(-)$1	262	0	18	23.4117
gggcgggggccgggcggc	chr9:127020390-127020633(+)$1	243	26	44	24.2941
GGGUGACGGGCGGGCGGA	chr3:33481577-33481851(-)$1	274	92	110	21.9411
GGGGGGCGAGCGGGAGAG	chr6:32936910-32937156(+)$1	246	74	92	22.1372
gggcgccgggcgcggggc	chr6:41703075-41703343(-)$1	268	18	36	24.8823
GGGUGGCGUGGGGGAGGG	chr1:154193653-154193999(+)$1	346	321	339	20.6666
gggcggguggggagggca	chr1:27022785-27022996(+)$1	211	1	19	19.8823
GGGCGAGGGGCUGGGGGC	chr11:75161664-75161960(-)$1	296	148	166	23.6078
CGGCGGCGGGAGGGAGGC	chr3:196729536-196729796(-)$1	260	32	50	22.6274
gggcgguaggcgggggcC	chr19:6424230-6424494(-)$1	264	156	174	25.6666
GGGGAGCUGGCGGGAGGG	chr17:54968708-54969019(-)$1	311	79	97	20.8627
GGGCGCGGGGAGGGGGAG	chr22:18256641-18256924(-)$1	283	101	119	25.1764
GGGCGGGGGGUGGAGGAA	chr13:111366326-111366599(+)$1	273	109	127	24.3921
GGGGAGAGGGUGGGGGUU	chr12:120654360-120654619(-)$1	259	72	90	19.1960
GGGCGGGGGUCGGcggcc	chr20:62371074-62371331(+)$1	257	93	111	23.6078
gggcccggggccggggga	chr17:40428158-40428441(-)$1	283	199	217	19.4901
cggcggcgggcgggugcg	chr19:39833103-39833387(+)$1	284	233	251	24.6862
ggguggcgggcgggggcu	chr2:95825194-95825457(-)$1	263	39	57	27.8235

#otherMatches

#Struct PSSM
nnn==========::hhh	chr14:103801527-103801802(+)$1	275	102	120	21.2549
3ddddbb]cccA}JJJJJ	chr6:160769216-160769475(+)$1	259	212	230	29.7843
DDDDKKFFFFFFKKIIII	chr1:202776256-202776489(-)$1	233	0	18	22.1372
[cccmmmmccc]bb]ddd	chr4:183838131-183838411(-)$1	280	38	56	20.4705
]ffffff]eeeee]bb]a	chr2:106361296-106361576(+)$1	280	95	113	30.5686
ffffff[dddd[ccc"""	chr13:114239466-114239728(+)$1	262	43	61	23.1176
iiii]ccc:ggggggg""	chr8:145064811-145065104(+)$1	293	145	163	21.5490
FFF{JJJJJJJJJJJJNN	chr6:37142127-37142421(+)$1	294	19	37	25.4705
hhhhHHHHHHHH:ggggg	chr19:1472442-1472688(-)$1	246	90	108	19.9803
===]ddddBB{BB{BBLL	chr3:185542660-185542935(-)$1	275	63	81	26.0588
:EEEEE{GGGGGGGdddd	chr16:75298581-75298849(-)$1	268	10	28	20.7647
JJJJJJJJJ}ACCCKKEE	chr19:2231956-2232235(+)$1	279	167	185	19.9803
###ddddnnnnndddd66	chr12:131356688-131356951(+)$1	263	88	106	22.7254
ffff]dddd]eeeeebb]	chr5:176873691-176874001(-)$1	310	130	148	19.2941
CJJJJJJJJJJJ::::::	chr6:149639327-149639627(+)$1	300	78	96	22.0392
IIII{CCC{DDDDLLLBB	chr17:38278461-38278739(+)$1	278	8	26	27.5294
dddd:EEEEEKKEEEEE{	chr19:42757907-42758149(-)$1	242	47	65	20.9607
eeee:BB}HHHHHHHH}E	chr16:53164973-53165237(+)$1	264	178	196	25.4705
b[bb[a!!cccmmmmccc	chr2:174828659-174828909(-)$1	250	34	52	23.0196
ddd22bb22=========	chr22:31741769-31742094(-)$1	325	239	257	25.5686
]aHHHHHHHHKKFFFFFF	chr12:49414181-49414448(-)$1	267	75	93	20.7647
JJJJJJJJJJGGGGGGGU	chr19:1104352-1104652(+)$1	300	78	96	21.9411
ee333bb4444ccc]ggg	chr16:73081628-73081906(-)$1	278	104	122	19.5882
22bb:ccc!!eeeee[dd	chr11:12696159-12696432(+)$1	273	147	165	21.5490
e:EEEEE}CCC}AFFFFF	chr4:124319278-124319537(+)$1	259	229	247	22.6274
EE::ffffff[ccc[ccc	chr19:42788118-42788373(+)$1	255	60	78	24.3921
na]ccc]bbccc]a]hhh	chr12:104531186-104531512(-)$1	326	113	131	23.1176
""ffffff$$$$$bb[dd	chr16:4661246-4661498(-)$1	252	98	116	23.9019
BBBB{CCC{CCCSSSSSS	chr3:14989004-14989274(-)$1	270	0	18	21.0588
mmmmccca22bbgggggg	chr11:842829-843068(+)$1	239	43	61	22.2352
ooooooa]dddd]a]eee	chr12:58149062-58149371(-)$1	309	258	276	22.3333
iiii$$$$$bb"""bb[f	chr3:100428660-100428952(+)$1	292	82	100	25.8627
bb[bbqqqqqqqqbb]bb	chr14:32546353-32546620(+)$1	267	109	127	23.7058
:::::FFFFFF{BB{BBK	chr1:155532433-155532695(-)$1	262	0	18	23.4117
vvvvvvvvvffffff]hh	chr9:127020390-127020633(+)$1	243	26	44	24.2941
bnnnnnbb22eeeee]bb	chr3:33481577-33481851(-)$1	274	92	110	21.9411
hhHHHHHHHH{DDDDQQQ	chr6:32936910-32937156(+)$1	246	74	92	22.1372
E{BB{CCCCCC{CCCEEE	chr6:41703075-41703343(-)$1	268	18	36	24.8823
ggg]ccceeeeecccfff	chr1:154193653-154193999(+)$1	346	321	339	20.6666
:EEEEE{CCCBB{CCCKK	chr1:27022785-27022996(+)$1	211	1	19	19.8823
"ccc[eeeee$$$$$ccc	chr11:75161664-75161960(-)$1	296	148	166	23.6078
a]ccc::GGGGGGG{DDD	chr3:196729536-196729796(-)$1	260	32	50	22.6274
nccc55555dddd]bb==	chr19:6424230-6424494(-)$1	264	156	174	25.6666
eeeee55555ahhhhhhh	chr17:54968708-54969019(-)$1	311	79	97	20.8627
dd]dddd]hhhhhhhh]a	chr22:18256641-18256924(-)$1	283	101	119	25.1764
ppp==========22ddd	chr13:111366326-111366599(+)$1	273	109	127	24.3921
JJJJJJJJJJ{CCCcccn	chr12:120654360-120654619(-)$1	259	72	90	19.1960
ggggg[bb[bb[a[dddd	chr20:62371074-62371331(+)$1	257	93	111	23.6078
ddddbb!!dddd[bbmmm	chr17:40428158-40428441(-)$1	283	199	217	19.4901
a]a]bb]ggggggg]bb]	chr19:39833103-39833387(+)$1	284	233	251	24.6862
EEEE{A{EEEEE{EEEEE	chr2:95825194-95825457(-)$1	263	39	57	27.8235

#DB
...))))))))))..(((	chr14:103801527-103801802(+)$1	1	102	120	21.2549
.)))))).)))).)))))	chr6:160769216-160769475(+)$1	1	212	230	29.7843
((((..((((((..((((	chr1:202776256-202776489(-)$1	1	0	18	22.1372
.(((....))).)).)))	chr4:183838131-183838411(-)$1	1	38	56	20.4705
.)))))).))))).)).)	chr2:106361296-106361576(+)$1	1	95	113	30.5686
((((((.((((.(((...	chr13:114239466-114239728(+)$1	1	43	61	23.1176
)))).))).(((((((..	chr8:145064811-145065104(+)$1	1	145	163	21.5490
(((.((((((((((((..	chr6:37142127-37142421(+)$1	1	19	37	25.4705
))))((((((((.(((((	chr19:1472442-1472688(-)$1	1	90	108	19.9803
))).))))((.((.((..	chr3:185542660-185542935(-)$1	1	63	81	26.0588
.(((((.(((((((((((	chr16:75298581-75298849(-)$1	1	10	28	20.7647
))))))))).)(((..((	chr19:2231956-2232235(+)$1	1	167	185	19.9803
...((((.....))))..	chr12:131356688-131356951(+)$1	1	88	106	22.7254
)))).)))).))))))).	chr5:176873691-176874001(-)$1	1	130	148	19.2941
((((((((((((......	chr6:149639327-149639627(+)$1	1	78	96	22.0392
((((.(((.((((...((	chr17:38278461-38278739(+)$1	1	8	26	27.5294
)))).(((((..(((((.	chr19:42757907-42758149(-)$1	1	47	65	20.9607
)))).)).)))))))).)	chr16:53164973-53165237(+)$1	1	178	196	25.4705
(.((.(..(((....)))	chr2:174828659-174828909(-)$1	1	34	52	23.0196
)))..))..)))))))))	chr22:31741769-31742094(-)$1	1	239	257	25.5686
.)((((((((..((((((	chr12:49414181-49414448(-)$1	1	75	93	20.7647
(((((((((((((((((.	chr19:1104352-1104652(+)$1	1	78	96	21.9411
))...))....))).)))	chr16:73081628-73081906(-)$1	1	104	122	19.5882
..)).(((..(((((.((	chr11:12696159-12696432(+)$1	1	147	165	21.5490
).))))).))).))))))	chr4:124319278-124319537(+)$1	1	229	247	22.6274
((..((((((.(((.(((	chr19:42788118-42788373(+)$1	1	60	78	24.3921
.).))).))))).).)))	chr12:104531186-104531512(-)$1	1	113	131	23.1176
..((((((.....((.((	chr16:4661246-4661498(-)$1	1	98	116	23.9019
((((.(((.(((......	chr3:14989004-14989274(-)$1	1	0	18	21.0588
....))))..))))))))	chr11:842829-843068(+)$1	1	43	61	22.2352
......).)))).).)))	chr12:58149062-58149371(-)$1	1	258	276	22.3333
((((.....((...((.(	chr3:100428660-100428952(+)$1	1	82	100	25.8627
((.((........)).))	chr14:32546353-32546620(+)$1	1	109	127	23.7058
.....((((((.((.((.	chr1:155532433-155532695(-)$1	1	0	18	23.4117
.........)))))).))	chr9:127020390-127020633(+)$1	1	26	44	24.2941
(.....))..))))).))	chr3:33481577-33481851(-)$1	1	92	110	21.9411
))((((((((.((((...	chr6:32936910-32937156(+)$1	1	74	92	22.1372
(.((.((((((.((((((	chr6:41703075-41703343(-)$1	1	18	36	24.8823
))).))))))))))))))	chr1:154193653-154193999(+)$1	1	321	339	20.6666
.(((((.(((((.(((..	chr1:27022785-27022996(+)$1	1	1	19	19.8823
.(((.(((((.....(((	chr11:75161664-75161960(-)$1	1	148	166	23.6078
).)))..(((((((.(((	chr3:196729536-196729796(-)$1	1	32	50	22.6274
.))).....)))).))))	chr19:6424230-6424494(-)$1	1	156	174	25.6666
))))).....))))))))	chr17:54968708-54969019(-)$1	1	79	97	20.8627
)).)))).)))))))).)	chr22:18256641-18256924(-)$1	1	101	119	25.1764
...))))))))))..)))	chr13:111366326-111366599(+)$1	1	109	127	24.3921
((((((((((.((((((.	chr12:120654360-120654619(-)$1	1	72	90	19.1960
(((((.((.((.(.((((	chr20:62371074-62371331(+)$1	1	93	111	23.6078
((((((..((((.((...	chr17:40428158-40428441(-)$1	1	199	217	19.4901
).).)).))))))).)).	chr19:39833103-39833387(+)$1	1	233	251	24.6862
((((.(.(((((.(((((	chr2:95825194-95825457(-)$1	1	39	57	27.8235

#PSSM
G : 0.56	g : 0.33	c : 0.03	A : 0.01	U : 0.01	C : 0.01	
G : 0.49	g : 0.35	C : 0.07	c : 0.03	U : 0.01	A : 0.01	
G : 0.58	g : 0.37	c : 0.01	C : 0.01	
C : 0.35	c : 0.31	G : 0.13	U : 0.07	u : 0.05	A : 0.03	g : 0.01	
G : 0.47	g : 0.33	A : 0.09	a : 0.03	C : 0.03	c : 0.01	
G : 0.54	g : 0.31	c : 0.07	A : 0.03	C : 0.01	
C : 0.25	c : 0.23	G : 0.23	g : 0.09	A : 0.07	U : 0.03	a : 0.03	u : 0.01	
G : 0.47	g : 0.35	U : 0.07	A : 0.05	u : 0.01	a : 0.01	
G : 0.52	g : 0.41	U : 0.03	A : 0.01	
G : 0.52	g : 0.37	c : 0.03	U : 0.03	A : 0.01	
c : 0.35	C : 0.29	A : 0.11	U : 0.09	G : 0.07	g : 0.05	
G : 0.54	g : 0.33	c : 0.05	U : 0.03	u : 0.01	
G : 0.50	g : 0.35	C : 0.05	a : 0.03	A : 0.01	c : 0.01	
G : 0.41	g : 0.29	c : 0.09	A : 0.07	C : 0.03	a : 0.03	U : 0.03	
G : 0.41	g : 0.33	A : 0.09	c : 0.05	u : 0.03	C : 0.03	a : 0.01	
G : 0.50	g : 0.43	C : 0.01	A : 0.01	c : 0.01	
G : 0.23	g : 0.21	A : 0.17	c : 0.17	U : 0.07	a : 0.05	C : 0.05	
G : 0.27	g : 0.19	C : 0.15	c : 0.13	A : 0.09	a : 0.05	U : 0.05	u : 0.01	

#score	1175.1764705882354
#seq	51
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_transcript_m1_run1.nuc.txt

#NT
CCUCAG	chr10:75528717-75528953(+)$1	236	41	47	15.1428
CCCCAG	chr6:31759569-31759793(-)$1	224	39	45	13.3061
CCCCAG	chr3:58123963-58124229(+)$1	266	144	150	13.3061
CCGCAG	chr5:37370898-37371145(-)$1	247	112	118	12.7959
GCUCAG	chr5:176665257-176665590(+)$1	333	31	37	11.5714
CCUCAG	chrX:53223459-53223718(-)$1	259	16	22	15.1428
GCUCAG	chr17:26960971-26961201(-)$1	230	48	54	11.5714
CCCCAG	chr19:59057037-59057267(+)$1	230	118	124	13.3061
CCUCAG	chr1:19467228-19467472(-)$1	244	233	239	15.1428
CCUCAG	chr5:132387645-132387984(+)$1	339	185	191	15.1428
CCACAG	chr12:120594652-120594896(-)$1	244	61	67	12.8979
CCCCAG	chr19:14574589-14574873(+)$1	284	44	50	13.3061
CCUCAG	chr15:90931382-90931729(+)$1	347	163	169	15.1428
CCACAG	chr1:186342398-186342683(-)$1	285	122	128	12.8979
CCUCAG	chr5:71495217-71495462(+)$1	245	118	124	15.1428
CCUCAG	chr6:7247131-7247393(+)$1	262	170	176	15.1428
CCUCAG	chr9:35714657-35714887(-)$1	230	36	42	15.1428
GCUCAG	chr19:18956790-18957028(+)$1	238	147	153	11.5714
CCACAG	chr19:18546835-18547096(-)$1	261	33	39	12.8979
CCGCAG	chr8:48873595-48873854(+)$1	259	237	243	12.7959
CCUCAG	chr17:26960465-26960703(-)$1	238	24	30	15.1428
CCCCAG	chr3:184026395-184026600(+)$1	205	164	170	13.3061
CCCCAG	chr19:6418611-6418876(-)$1	265	39	45	13.3061
CCCCAG	chr2:230705437-230705719(-)$1	282	125	131	13.3061
GCUCAG	chr11:65347452-65347711(+)$1	259	25	31	11.5714
CCUCAG	chr17:7405275-7405528(+)$1	253	176	182	15.1428
CCCCAG	chr1:151278631-151278900(-)$1	269	55	61	13.3061
CCUCAG	chr19:39207686-39207948(+)$1	262	221	227	15.1428
CCUCAG	chr19:59060821-59061050(+)$1	229	45	51	15.1428
CCUCAG	chr8:144992409-144992658(-)$1	249	231	237	15.1428
CCGCAG	chr6:160210432-160210687(-)$1	255	216	222	12.7959
CCUCAG	chr9:139349998-139350262(-)$1	264	11	17	15.1428
ccgcAG	chr1:234744747-234745007(-)$1	260	97	103	12.7959
GCUCAG	chr3:33840285-33840530(+)$1	245	69	75	11.5714
ccucag	chr3:196538172-196538423(+)$1	251	193	199	15.1428
GCUCAG	chr5:71482370-71482622(+)$1	252	38	44	11.5714
CCGCAG	chr1:6485032-6485301(+)$1	269	50	56	12.7959
CCCCAG	chr3:58116491-58116735(+)$1	244	13	19	13.3061
CCUCAG	chr21:33719236-33719512(-)$1	276	69	75	15.1428
CCUCAG	chr3:58110046-58110317(+)$1	271	105	111	15.1428
CCCCAG	chr8:48771441-48771647(-)$1	206	15	21	13.3061
CCACAG	chr12:49521705-49521974(-)$1	269	19	25	12.8979
CCUCAG	chr7:128483366-128483602(+)$1	236	89	95	15.1428
CCACAG	chr15:22969127-22969418(+)$1	291	29	35	12.8979
GCUCAG	chrX:53607807-53608067(-)$1	260	88	94	11.5714
CCUCAG	chr19:33096637-33096922(-)$1	285	109	115	15.1428
CCACAG	chr17:78311283-78311513(+)$1	230	33	39	12.8979
CCUCAG	chr9:35714259-35714469(-)$1	210	130	136	15.1428

#otherMatches

#Struct PSSM
nnnndd	chr8:124408419-124408701(-)$1	282	187	193	15.1428
ee[ccc	chr10:75528717-75528953(+)$1	236	41	47	15.1428
DDD:bb	chr6:31759569-31759793(-)$1	224	39	45	13.3061
ddd::g	chr3:58123963-58124229(+)$1	266	144	150	13.3061
eeee]d	chr5:37370898-37371145(-)$1	247	112	118	12.7959
CCHHHH	chr5:176665257-176665590(+)$1	333	31	37	11.5714
{CCC:A	chrX:53223459-53223718(-)$1	259	16	22	15.1428
GGGGG{	chr17:26960971-26961201(-)$1	230	48	54	11.5714
bbaddd	chr19:59057037-59057267(+)$1	230	118	124	13.3061
HHHHHH	chr1:19467228-19467472(-)$1	244	233	239	15.1428
ccc]cc	chr5:132387645-132387984(+)$1	339	185	191	15.1428
NFFFFF	chr12:120594652-120594896(-)$1	244	61	67	12.8979
dmmmmd	chr19:14574589-14574873(+)$1	284	44	50	13.3061
nnnncc	chr15:90931382-90931729(+)$1	347	163	169	15.1428
a]dddd	chr1:186342398-186342683(-)$1	285	122	128	12.8979
4ccc22	chr5:71495217-71495462(+)$1	245	118	124	15.1428
ccccoo	chr6:7247131-7247393(+)$1	262	170	176	15.1428
b::::E	chr9:35714657-35714887(-)$1	230	36	42	15.1428
mmmeee	chr19:18956790-18957028(+)$1	238	147	153	11.5714
EEEEEB	chr19:18546835-18547096(-)$1	261	33	39	12.8979
GGGGGG	chr8:48873595-48873854(+)$1	259	237	243	12.7959
:::::B	chr17:26960465-26960703(-)$1	238	24	30	15.1428
eooooo	chr3:184026395-184026600(+)$1	205	164	170	13.3061
ggg!!b	chr19:6418611-6418876(-)$1	265	39	45	13.3061
eebbpp	chr2:230705437-230705719(-)$1	282	125	131	13.3061
ff[ggg	chr11:65347452-65347711(+)$1	259	25	31	11.5714
ggbbff	chr17:7405275-7405528(+)$1	253	176	182	15.1428
hhhhhh	chr1:151278631-151278900(-)$1	269	55	61	13.3061
CC}CCC	chr19:39207686-39207948(+)$1	262	221	227	15.1428
ccc!!c	chr19:59060821-59061050(+)$1	229	45	51	15.1428
gggg::	chr8:144992409-144992658(-)$1	249	231	237	15.1428
JJJJJJ	chr6:160210432-160210687(-)$1	255	216	222	12.7959
CC{EEE	chr9:139349998-139350262(-)$1	264	11	17	15.1428
b[bb[d	chr1:234744747-234745007(-)$1	260	97	103	12.7959
bblllb	chr3:33840285-33840530(+)$1	245	69	75	11.5714
ddd$$$	chr3:196538172-196538423(+)$1	251	193	199	15.1428
B{DDDD	chr5:71482370-71482622(+)$1	252	38	44	11.5714
cc[ddd	chr1:6485032-6485301(+)$1	269	50	56	12.7959
KEEEEE	chr3:58116491-58116735(+)$1	244	13	19	13.3061
EKKCCC	chr21:33719236-33719512(-)$1	276	69	75	15.1428
22dddd	chr3:58110046-58110317(+)$1	271	105	111	15.1428
dd"""b	chr8:48771441-48771647(-)$1	206	15	21	13.3061
FFFggg	chr12:49521705-49521974(-)$1	269	19	25	12.8979
[ccc[a	chr7:128483366-128483602(+)$1	236	89	95	15.1428
e[ccc[	chr15:22969127-22969418(+)$1	291	29	35	12.8979
ccc[a[	chrX:53607807-53608067(-)$1	260	88	94	11.5714
:::::c	chr19:33096637-33096922(-)$1	285	109	115	15.1428
{DDDDd	chr17:78311283-78311513(+)$1	230	33	39	12.8979
rrrccc	chr9:35714259-35714469(-)$1	210	130	136	15.1428

#DB
....))	chr8:124408419-124408701(-)$1	1	187	193	15.1428
((.(((	chr10:75528717-75528953(+)$1	1	41	47	15.1428
(((.((	chr6:31759569-31759793(-)$1	1	39	45	13.3061
)))..(	chr3:58123963-58124229(+)$1	1	144	150	13.3061
)))).)	chr5:37370898-37371145(-)$1	1	112	118	12.7959
((((((	chr5:176665257-176665590(+)$1	1	31	37	11.5714
.(((.(	chrX:53223459-53223718(-)$1	1	16	22	15.1428
(((((.	chr17:26960971-26961201(-)$1	1	48	54	11.5714
))))))	chr19:59057037-59057267(+)$1	1	118	124	13.3061
))))))	chr1:19467228-19467472(-)$1	1	233	239	15.1428
))).))	chr5:132387645-132387984(+)$1	1	185	191	15.1428
.(((((	chr12:120594652-120594896(-)$1	1	61	67	12.8979
(....)	chr19:14574589-14574873(+)$1	1	44	50	13.3061
....))	chr15:90931382-90931729(+)$1	1	163	169	15.1428
).))))	chr1:186342398-186342683(-)$1	1	122	128	12.8979
.)))..	chr5:71495217-71495462(+)$1	1	118	124	15.1428
((((..	chr6:7247131-7247393(+)$1	1	170	176	15.1428
)....(	chr9:35714657-35714887(-)$1	1	36	42	15.1428
...)))	chr19:18956790-18957028(+)$1	1	147	153	11.5714
((((((	chr19:18546835-18547096(-)$1	1	33	39	12.8979
))))))	chr8:48873595-48873854(+)$1	1	237	243	12.7959
.....(	chr17:26960465-26960703(-)$1	1	24	30	15.1428
(.....	chr3:184026395-184026600(+)$1	1	164	170	13.3061
(((..(	chr19:6418611-6418876(-)$1	1	39	45	13.3061
((((..	chr2:230705437-230705719(-)$1	1	125	131	13.3061
((.(((	chr11:65347452-65347711(+)$1	1	25	31	11.5714
((((((	chr17:7405275-7405528(+)$1	1	176	182	15.1428
))))))	chr1:151278631-151278900(-)$1	1	55	61	13.3061
)).)))	chr19:39207686-39207948(+)$1	1	221	227	15.1428
(((..(	chr19:59060821-59061050(+)$1	1	45	51	15.1428
))))..	chr8:144992409-144992658(-)$1	1	231	237	15.1428
))))))	chr6:160210432-160210687(-)$1	1	216	222	12.7959
((.(((	chr9:139349998-139350262(-)$1	1	11	17	15.1428
(.((.(	chr1:234744747-234745007(-)$1	1	97	103	12.7959
((...)	chr3:33840285-33840530(+)$1	1	69	75	11.5714
(((...	chr3:196538172-196538423(+)$1	1	193	199	15.1428
(.((((	chr5:71482370-71482622(+)$1	1	38	44	11.5714
((.(((	chr1:6485032-6485301(+)$1	1	50	56	12.7959
.(((((	chr3:58116491-58116735(+)$1	1	13	19	13.3061
(..(((	chr21:33719236-33719512(-)$1	1	69	75	15.1428
..))))	chr3:58110046-58110317(+)$1	1	105	111	15.1428
((...(	chr8:48771441-48771647(-)$1	1	15	21	13.3061
((((((	chr12:49521705-49521974(-)$1	1	19	25	12.8979
.(((.(	chr7:128483366-128483602(+)$1	1	89	95	15.1428
(.(((.	chr15:22969127-22969418(+)$1	1	29	35	12.8979
(((.(.	chrX:53607807-53608067(-)$1	1	88	94	11.5714
.....(	chr19:33096637-33096922(-)$1	1	109	115	15.1428
.(((((	chr17:78311283-78311513(+)$1	1	33	39	12.8979
...)))	chr9:35714259-35714469(-)$1	1	130	136	15.1428

#PSSM
C : 0.81	G : 0.14	c : 0.04	
C : 0.95	c : 0.04	
U : 0.55	C : 0.20	A : 0.12	G : 0.08	g : 0.02	u : 0.02	
C : 0.95	c : 0.04	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	

#score	673.4285714285718
#seq	49
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_transcript_m2_run1.nuc.txt

#NT
acagaaaaca	chr8:91265841-91266085(+)$1	244	29	39	14.3859
ACAGAAAACA	chr11:65268651-65268854(+)$1	203	136	146	14.3859
GAAGAUAAAA	chr2:9096965-9097244(-)$1	279	181	191	15.1754
AUagaaagaa	chr2:178232198-178232474(-)$1	276	249	259	13.8596
aaagaauaac	chr16:23949343-23949603(+)$1	260	162	172	13.9473
aaagagaaua	chr7:119433994-119434271(-)$1	277	136	146	15.2631
aaagaaaaaa	chr8:91270311-91270553(+)$1	242	152	162	22.1929
agagagaaaa	chr7:119346548-119346792(-)$1	244	129	139	15.0000
aaaaaaaaaa	chr6:147617271-147617572(+)$1	301	88	98	18.6842
aaaggagaaa	chr21:39470651-39470933(-)$1	282	156	166	14.6491
AAAGAAAACA	chr2:152321442-152321689(+)$1	247	46	56	18.4210
aaaguuaaaa	chr3:6616010-6616265(+)$1	255	80	90	15.4385
AAAGAUAAAA	chr11:65266718-65266923(+)$1	205	27	37	18.9473
aaagaaacca	chr1:198182216-198182530(+)$1	314	171	181	14.3859
aaaauaaaaa	chr7:120887316-120887589(+)$1	273	66	76	15.1754
aaagaaaaaa	chr3:6629418-6629689(+)$1	271	74	84	22.1929
AAUGGAAAAA	chr11:65269341-65269545(+)$1	204	97	107	14.6491
acagaaagaa	chr2:168747931-168748198(-)$1	267	162	172	14.1228
AAAGAGAAAC	chr21:45453864-45454169(+)$1	305	110	120	15.0877
caaaaaaaaa	chr6:147616947-147617214(+)$1	267	251	261	14.7368
aaagcaacaa	chr16:20692748-20693041(+)$1	293	276	286	14.6491
aaaggcaaaa	chr2:168766473-168766737(-)$1	264	59	69	15.2631
AAAGAAAAAA	chr3:37366209-37366475(+)$1	266	77	87	22.1929
aaagaaaauc	chr7:119432952-119433211(-)$1	259	79	89	14.1228
AAAGAAAAAG	chr1:29505203-29505467(-)$1	264	182	192	17.8947
aaacaaaaAA	chr4:770468-770771(-)$1	303	205	215	18.3333
aaagaacaaa	chr18:1365193-1365448(-)$1	255	189	199	17.8947
AAAGCAAAAA	chr1:214819808-214820064(+)$1	256	212	222	18.6842
AAAGAAAACA	chr18:9257991-9258247(+)$1	256	170	180	18.4210
agagaaacaa	chr7:120898194-120898445(+)$1	251	199	209	13.9473
aaagucaaaa	chr8:91273012-91273255(+)$1	243	19	29	15.1754
aaaaauaaaa	chr16:47329820-47330082(-)$1	262	63	73	15.4385
aaagaaaaaa	chr8:91270377-91270642(+)$1	265	86	96	22.1929
AAUGGAAAAA	chr11:65269318-65269536(+)$1	218	120	130	14.6491
aaagagaaaa	chr7:119434168-119434417(-)$1	249	31	41	19.2105
caagaaaaua	chr12:62908861-62909139(+)$1	278	180	190	14.2982
GAAGAAAUAA	chr1:39800999-39801251(+)$1	252	57	67	14.2982
AAUGGAAAAA	chr11:65269359-65269561(+)$1	202	79	89	14.6491
AAAGCGAAAA	chr11:65270430-65270637(+)$1	207	26	36	15.7017
gaagaauaaa	chr7:119427459-119427710(-)$1	251	208	218	14.2982
AAAGAUAAAA	chr11:65266671-65266878(+)$1	207	74	84	18.9473
AAAGCGAAAA	chr11:65270437-65270649(+)$1	212	19	29	15.7017
acagaaaaaa	chr8:91270465-91270710(+)$1	245	60	70	18.1578
aaacaaaaac	chr7:119344792-119345158(-)$1	366	340	350	14.2105
AAAGAAAUGA	chr15:40913964-40914222(+)$1	258	43	53	13.9473
aaaaaaaaaa	chr7:119546639-119546898(-)$1	259	18	28	18.6842
AAAAAAaaaa	chr8:91273652-91273928(+)$1	276	60	70	18.6842
AAAGAAGAAG	chr2:152320603-152320891(+)$1	288	108	118	13.7719
aaagaaagaa	chr8:91384487-91384746(+)$1	259	150	160	18.1578
GAAGAGAAAA	chr7:119429565-119429824(-)$1	259	150	160	15.4385
caagaaaaaa	chr7:119346878-119347124(-)$1	246	104	114	18.2456
aaacaagaaa	chr6:10940986-10941332(+)$1	346	282	292	14.2105
AAAGAAAAAA	chr3:37367418-37367694(+)$1	276	45	55	22.1929
UAAAAAAAAA	chr7:119435462-119435724(-)$1	262	0	10	14.5614
AAUGAAUAAA	chr19:21631277-21631596(-)$1	319	224	234	13.9473
AAAGUGAAAA	chr11:62292795-62293047(-)$1	252	228	238	15.7017

#otherMatches

#Struct PSSM
wwdddd::::	chr2:55253544-55253784(-)$1	240	26	36	14.2982
[bbrrrrrrr	chr8:91265841-91266085(+)$1	244	29	39	14.3859
qqqqqqqccc	chr11:65268651-65268854(+)$1	203	136	146	14.3859
JJJJJJ::::	chr2:9096965-9097244(-)$1	279	181	191	15.1754
EEE::::::e	chr2:178232198-178232474(-)$1	276	249	259	13.8596
mdddd55555	chr16:23949343-23949603(+)$1	260	162	172	13.9473
iiiiiiiii2	chr7:119433994-119434271(-)$1	277	136	146	15.2631
:::::::::C	chr8:91270311-91270553(+)$1	242	152	162	22.1929
eeeee:::::	chr7:119346548-119346792(-)$1	244	129	139	15.0000
^^^^^^^^^^	chr6:147617271-147617572(+)$1	301	88	98	18.6842
::GGGGGGG:	chr21:39470651-39470933(-)$1	282	156	166	14.6491
::::::::::	chr2:152321442-152321689(+)$1	247	46	56	18.4210
::::::::::	chr3:6616010-6616265(+)$1	255	80	90	15.4385
wwwwwwwwww	chr11:65266718-65266923(+)$1	205	27	37	18.9473
:::::::III	chr1:198182216-198182530(+)$1	314	171	181	14.3859
0000000000	chr7:120887316-120887589(+)$1	273	66	76	15.1754
::::::::::	chr3:6629418-6629689(+)$1	271	74	84	22.1929
oooccc22dd	chr11:65269341-65269545(+)$1	204	97	107	14.6491
666666gggg	chr2:168747931-168748198(-)$1	267	162	172	14.1228
ppeeeee]dd	chr21:45453864-45454169(+)$1	305	110	120	15.0877
::::::::::	chr6:147616947-147617214(+)$1	267	251	261	14.7368
eeeeeHHHHH	chr16:20692748-20693041(+)$1	293	276	286	14.6491
%%%%bb!!dd	chr2:168766473-168766737(-)$1	264	59	69	15.2631
::::::::::	chr3:37366209-37366475(+)$1	266	77	87	22.1929
oooggggggg	chr7:119432952-119433211(-)$1	259	79	89	14.1228
++++++++cc	chr1:29505203-29505467(-)$1	264	182	192	17.8947
h!!hhhhhhh	chr4:770468-770771(-)$1	303	205	215	18.3333
::::::::::	chr18:1365193-1365448(-)$1	255	189	199	17.8947
++++++++++	chr1:214819808-214820064(+)$1	256	212	222	18.6842
!!dddd[ccc	chr18:9257991-9258247(+)$1	256	170	180	18.4210
66ffffff::	chr7:120898194-120898445(+)$1	251	199	209	13.9473
:GGGGGGGLL	chr8:91273012-91273255(+)$1	243	19	29	15.1754
::::::::::	chr16:47329820-47330082(-)$1	262	63	73	15.4385
""eeeeeuuu	chr8:91270377-91270642(+)$1	265	86	96	22.1929
oooccc22dd	chr11:65269318-65269536(+)$1	218	120	130	14.6491
PPPPPFFFFF	chr7:119434168-119434417(-)$1	249	31	41	19.2105
:::::::ddd	chr12:62908861-62909139(+)$1	278	180	190	14.2982
::::::::::	chr1:39800999-39801251(+)$1	252	57	67	14.2982
oooccc22dd	chr11:65269359-65269561(+)$1	202	79	89	14.6491
::::::::::	chr11:65270430-65270637(+)$1	207	26	36	15.7017
::::::::::	chr7:119427459-119427710(-)$1	251	208	218	14.2982
wwwwwwwwww	chr11:65266671-65266878(+)$1	207	74	84	18.9473
::::::::::	chr11:65270437-65270649(+)$1	212	19	29	15.7017
eeee::::::	chr8:91270465-91270710(+)$1	245	60	70	18.1578
b]ffffff::	chr7:119344792-119345158(-)$1	366	340	350	14.2105
:::CCC{DDD	chr15:40913964-40914222(+)$1	258	43	53	13.9473
::::::::::	chr7:119546639-119546898(-)$1	259	18	28	18.6842
::::::::::	chr8:91273652-91273928(+)$1	276	60	70	18.6842
sssccc22gg	chr2:152320603-152320891(+)$1	288	108	118	13.7719
e[bboooooo	chr8:91384487-91384746(+)$1	259	150	160	18.1578
##cccnnnnn	chr7:119429565-119429824(-)$1	259	150	160	15.4385
CC:::::::b	chr7:119346878-119347124(-)$1	246	104	114	18.2456
:::::::===	chr6:10940986-10941332(+)$1	346	282	292	14.2105
MMEEEEE:::	chr3:37367418-37367694(+)$1	276	45	55	22.1929
::::::::::	chr7:119435462-119435724(-)$1	262	0	10	14.5614
oooffffff:	chr19:21631277-21631596(-)$1	319	224	234	13.9473
@@@@DDDDZZ	chr11:62292795-62293047(-)$1	252	228	238	15.7017

#DB
..))))....	chr2:55253544-55253784(-)$1	1	26	36	14.2982
.((.......	chr8:91265841-91266085(+)$1	1	29	39	14.3859
.......)))	chr11:65268651-65268854(+)$1	1	136	146	14.3859
((((((....	chr2:9096965-9097244(-)$1	1	181	191	15.1754
)))......(	chr2:178232198-178232474(-)$1	1	249	259	13.8596
.)))).....	chr16:23949343-23949603(+)$1	1	162	172	13.9473
))))))))).	chr7:119433994-119434271(-)$1	1	136	146	15.2631
.........)	chr8:91270311-91270553(+)$1	1	152	162	22.1929
))))).....	chr7:119346548-119346792(-)$1	1	129	139	15.0000
..........	chr6:147617271-147617572(+)$1	1	88	98	18.6842
..(((((((.	chr21:39470651-39470933(-)$1	1	156	166	14.6491
..........	chr2:152321442-152321689(+)$1	1	46	56	18.4210
..........	chr3:6616010-6616265(+)$1	1	80	90	15.4385
..........	chr11:65266718-65266923(+)$1	1	27	37	18.9473
.......)))	chr1:198182216-198182530(+)$1	1	171	181	14.3859
..........	chr7:120887316-120887589(+)$1	1	66	76	15.1754
..........	chr3:6629418-6629689(+)$1	1	74	84	22.1929
...)))..))	chr11:65269341-65269545(+)$1	1	97	107	14.6491
......))))	chr2:168747931-168748198(-)$1	1	162	172	14.1228
..))))).))	chr21:45453864-45454169(+)$1	1	110	120	15.0877
..........	chr6:147616947-147617214(+)$1	1	251	261	14.7368
))))))))))	chr16:20692748-20693041(+)$1	1	276	286	14.6491
....((..((	chr2:168766473-168766737(-)$1	1	59	69	15.2631
..........	chr3:37366209-37366475(+)$1	1	77	87	22.1929
...)))))))	chr7:119432952-119433211(-)$1	1	79	89	14.1228
........((	chr1:29505203-29505467(-)$1	1	182	192	17.8947
(..(((((((	chr4:770468-770771(-)$1	1	205	215	18.3333
..........	chr18:1365193-1365448(-)$1	1	189	199	17.8947
..........	chr1:214819808-214820064(+)$1	1	212	222	18.6842
..((((.(((	chr18:9257991-9258247(+)$1	1	170	180	18.4210
..))))))..	chr7:120898194-120898445(+)$1	1	199	209	13.9473
.(((((((..	chr8:91273012-91273255(+)$1	1	19	29	15.1754
..........	chr16:47329820-47330082(-)$1	1	63	73	15.4385
..(((((...	chr8:91270377-91270642(+)$1	1	86	96	22.1929
...)))..))	chr11:65269318-65269536(+)$1	1	120	130	14.6491
.....(((((	chr7:119434168-119434417(-)$1	1	31	41	19.2105
.......(((	chr12:62908861-62909139(+)$1	1	180	190	14.2982
..........	chr1:39800999-39801251(+)$1	1	57	67	14.2982
...)))..))	chr11:65269359-65269561(+)$1	1	79	89	14.6491
..........	chr11:65270430-65270637(+)$1	1	26	36	15.7017
..........	chr7:119427459-119427710(-)$1	1	208	218	14.2982
..........	chr11:65266671-65266878(+)$1	1	74	84	18.9473
..........	chr11:65270437-65270649(+)$1	1	19	29	15.7017
))))......	chr8:91270465-91270710(+)$1	1	60	70	18.1578
).))))))..	chr7:119344792-119345158(-)$1	1	340	350	14.2105
...(((.(((	chr15:40913964-40914222(+)$1	1	43	53	13.9473
..........	chr7:119546639-119546898(-)$1	1	18	28	18.6842
..........	chr8:91273652-91273928(+)$1	1	60	70	18.6842
...)))..))	chr2:152320603-152320891(+)$1	1	108	118	13.7719
(.((......	chr8:91384487-91384746(+)$1	1	150	160	18.1578
..(((.....	chr7:119429565-119429824(-)$1	1	150	160	15.4385
((.......(	chr7:119346878-119347124(-)$1	1	104	114	18.2456
.......(((	chr6:10940986-10941332(+)$1	1	282	292	14.2105
..(((((...	chr3:37367418-37367694(+)$1	1	45	55	22.1929
..........	chr7:119435462-119435724(-)$1	1	0	10	14.5614
...)))))).	chr19:21631277-21631596(-)$1	1	224	234	13.9473
....))))..	chr11:62292795-62293047(-)$1	1	228	238	15.7017

#PSSM
a : 0.47	A : 0.36	G : 0.07	c : 0.05	g : 0.01	U : 0.01	
a : 0.45	A : 0.42	c : 0.05	g : 0.03	C : 0.01	U : 0.01	
a : 0.56	A : 0.35	U : 0.08	
g : 0.42	G : 0.40	a : 0.08	c : 0.05	A : 0.03	
a : 0.45	A : 0.31	u : 0.05	G : 0.05	C : 0.05	g : 0.03	c : 0.01	U : 0.01	
a : 0.43	A : 0.29	G : 0.08	U : 0.05	g : 0.05	u : 0.03	c : 0.03	
a : 0.49	A : 0.38	u : 0.03	g : 0.03	c : 0.01	G : 0.01	U : 0.01	
a : 0.47	A : 0.38	g : 0.05	c : 0.05	U : 0.03	
a : 0.47	A : 0.36	C : 0.05	u : 0.05	c : 0.03	G : 0.01	
a : 0.50	A : 0.38	c : 0.05	G : 0.03	C : 0.01	

#score	930.8771929824561
#seq	57
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_UTR_m1_run2.nuc.txt

#NT
uuuuuucuuuuuuuuuuuuuuuuuuuA	chr5:148875180-148875412(-)$1	232	79	106	63.4999
ucuuucuuuuuuuuuuuuuuuuuuuuu	chr3:152881388-152881617(+)$1	229	59	86	60.2592
GAAAuuuuuuuuuuuuuuuuuuuuuga	chr19:973018-973287(+)$1	269	82	109	54.9814
GCuucuuuuuuuuuuuuuuuuuuuuGG	chrX:48770614-48770939(-)$1	325	83	110	56.7407
uuuuuuuuuuuuuuuuuuuuuuuuuua	chr17:17115683-17115894(-)$1	211	79	106	67.4814
ucuuuuuuuuuuuuucuuuucuuuucu	chr4:77996929-77997146(-)$1	217	84	111	53.8703
uuuguuuuuguuuuuuuuuuuuuuuga	chr6:21232149-21232443(+)$1	294	81	108	59.8888
UCAAuuuuuuuuuuuuuuuuuuuuuga	chr6:150047394-150047638(-)$1	244	81	108	60.5370
uguugguuuuuuuuuuuuuuuuuuuAA	chr1:33145904-33146144(+)$1	240	48	75	56.5555
uuuuuuuuuucuuuuuuuuuuuuuuuA	chr17:79845685-79845939(-)$1	254	79	106	62.6666
ucuuuuuuuuuuuuuuuuuuuuuuuGA	chr2:29023057-29023273(+)$1	216	33	60	68.1296
uuuuuuuuuuuuuuuuuuuuuuuuuGU	chr3:196659531-196659783(+)$1	252	71	98	66.0925
uuuuuuuuuuuuuuuuuuuuuuuuuua	chr1:193057234-193057467(+)$1	233	63	90	67.4814
UCuuuuuuuuuuuuuuuuuuuuuuuuu	chr11:62360765-62361019(-)$1	254	79	106	64.8888
UCuuuuuuucuuuuuuuuuuuuuuuuu	chr1:113212896-113213163(+)$1	267	78	105	60.5370
ucuuuuuuuuuuuuuuuuuuuuuuuGA	chr2:29023009-29023257(+)$1	248	81	108	68.1296
aguuuuuuuuuuuuuuucuuuuuuuga	chr7:117825223-117825493(+)$1	270	82	109	58.4999
ucuuuuuuuuuuuuuuuuuuuuuuuga	chr7:56147870-56148185(+)$1	315	81	108	68.1296
uuuuuuuuuuuuuuuuuuuuuuuuuGU	chr3:196659520-196659731(+)$1	211	82	109	66.0925
UCuuuuuuuuuuuuuuuuuuuuuuuuu	chr3:10142982-10143239(+)$1	257	77	104	64.8888
uuguuuuuuguuuuuguuuuuuuuuga	chr11:27516821-27517126(-)$1	305	82	109	55.6296
uuuuuuuuuuuuuuuuuuuuGUCUUGA	chr1:36386800-36387016(+)$1	216	84	111	59.0555
uuuuuuuuuuuuuuuuuuuuuuuuuuA	chr1:12677569-12677829(-)$1	260	9	36	67.4814
uuuuuuuuuuuuuuuuuuuuuuuuuGC	chr12:22839707-22839986(+)$1	279	81	108	65.2592
uuguuuuuuuuuuuuuuuuuuuuuuga	chr12:133348986-133349236(-)$1	250	82	109	64.6111
UCCUuucuuuuuuuuuuuuuuuuuuuu	chr1:3806125-3806353(-)$1	228	61	88	57.2037
uuuuuuuuuuuuuuuuuuuuuuuuuga	chr17:30701149-30701411(+)$1	262	82	109	68.4074
uguugguuuuuuuuuuuuuuuuuuuAA	chr1:33145873-33146104(+)$1	231	79	106	56.5555
uuuuuuuuuuuuuuuuuuuuuuuuuGC	chr7:100277606-100277895(-)$1	289	82	109	65.2592
ucuuuuuuuuuuuuuuuuuuuaauuau	chr3:197401578-197401831(-)$1	253	31	58	54.4259
UCuuuuuuuuuguuuuuuuuuuguuuu	chr1:203771757-203772006(+)$1	249	83	110	55.8148
uuuuuucuuuuuuuuuuuuuuuuuuuA	chr5:148875165-148875373(-)$1	208	40	67	63.4999
uuuuuuuuuuuuuuuuuuuuuuuuuua	chr1:193057216-193057434(+)$1	218	81	108	67.4814
uguuuuuuuuuguuuuuuuuuuuuuga	chr21:45179969-45180232(+)$1	263	81	108	62.8518
ACUUCUAuuuuuuuuuuuuuuuuuuga	chr5:36183280-36183537(+)$1	257	81	108	55.7222
UGUAuuuuuuuuuuuuuuuuuuuuuga	chr1:1498763-1499024(-)$1	261	82	109	63.1296
ugucuuuuuuuuuuuuuuuuuuuuuAA	chr3:9848116-9848363(+)$1	247	80	107	60.9999
uuuuuuuuuuuuuuuuuuuuuuuuuga	chr3:160154423-160154692(-)$1	269	82	109	68.4074
UGUUUUUUGGUUUUUUUUUUUUUUUUA	chr7:100278770-100279029(-)$1	259	23	50	57.4814
uGAGuuuuuuuuuuuuuuuuuuuuGGA	chr6:24719240-24719490(-)$1	250	83	110	54.7962
ucuuuuuucuuguuuuuuuuuuuuuuu	chr2:188330076-188330297(-)$1	221	51	78	55.9074
uuuuuuuuuuuuuuuuuuuuuuuuuAA	chr2:29170651-29170933(+)$1	282	79	106	66.4629
GCuucuuuuuuuuuuuuuuuuuuuuGG	chrX:48770824-48771115(-)$1	291	259	286	56.7407
UAAuuuuucuuuuuuuuuuuuuuuuga	chr6:33269245-33269498(-)$1	253	123	150	58.6851
AGAuuuuuuuuuuuuuuuuuuuuuuAA	chr3:9519289-9519511(+)$1	222	71	98	57.9444
ucuuuuuuuuuuuuuuuuuuuuuuuga	chr11:65764639-65764905(-)$1	266	83	110	68.1296
AGAuuuuuuuuuuuuuuuuuuuuuuAA	chr3:9519311-9519526(+)$1	215	49	76	57.9444
uuuucuuuucuuuuuuuuuuuuuuuga	chr11:61133852-61134111(+)$1	259	81	108	59.9814
uuuuuuuuuuuuuuuuuuuuuuuuuga	chr19:33203201-33203465(+)$1	264	83	110	68.4074
UCCUuucuuuuuuuuuuuuuuuuuuuu	chr1:3806153-3806370(-)$1	217	78	105	57.2037
ucuuuuuuuuuuuuuuuuuuuuuuuuA	chr19:12833191-12833478(-)$1	287	77	104	67.2037
uuuuuucuuuuuuuuuuuuuuuuuuuA	chr5:148875173-148875380(-)$1	207	47	74	63.4999
UACuuuuuuuuuuuuuuuuuuuuuugc	chr6:7287010-7287257(-)$1	247	83	110	59.7962

#otherMatches

#Struct PSSM
77777=============:::::eeee	chr12:54627821-54628070(-)$1	249	83	110	68.4074
JJJJCCC::::::::::::::::::::	chr5:148875180-148875412(-)$1	232	79	106	63.4999
================]ccc::::::d	chr3:152881388-152881617(+)$1	229	59	86	60.2592
f++++++++++++++++++++++++++	chr19:973018-973287(+)$1	269	82	109	54.9814
cc:::::::::::::::::::::::GG	chrX:48770614-48770939(-)$1	325	83	110	56.7407
ddd::::::::::::eeeeeooooooe	chr17:17115683-17115894(-)$1	211	79	106	67.4814
^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr4:77996929-77997146(-)$1	217	84	111	53.8703
999ggggggg55555ccc22eeeee]c	chr6:21232149-21232443(+)$1	294	81	108	59.8888
============>>>>>>>>>>>ffff	chr6:150047394-150047638(-)$1	244	81	108	60.5370
JJJJJJJJJ{HHHHHHHH:::::::gg	chr1:33145904-33146144(+)$1	240	48	75	56.5555
ggg666666dddd]dddd7777777cc	chr17:79845685-79845939(-)$1	254	79	106	62.6666
:::::::::::::::::::::::::::	chr2:29023057-29023273(+)$1	216	33	60	68.1296
::HHHHHHHHQQQQQQQQJJJJJJJJJ	chr3:196659531-196659783(+)$1	252	71	98	66.0925
::::::::::::::::::::::::HHH	chr1:193057234-193057467(+)$1	233	63	90	67.4814
ggg>>>>>>>>>>>>>>>>>>>>====	chr11:62360765-62361019(-)$1	254	79	106	64.8888
dd:::::::::::::::::::::::::	chr1:113212896-113213163(+)$1	267	78	105	60.5370
::::::::::::::::::eeeee[bb!	chr2:29023009-29023257(+)$1	248	81	108	68.1296
hhhhhhh333eeeee]eeeee333ccc	chr7:117825223-117825493(+)$1	270	82	109	58.4999
ddd4444ccc]ggggggg::::HHHHH	chr7:56147870-56148185(+)$1	315	81	108	68.1296
:::::::::::::::::::::::EEEE	chr3:196659520-196659731(+)$1	211	82	109	66.0925
f[eeeee^^^^^^^^^^^^^^^^^^^^	chr3:10142982-10143239(+)$1	257	77	104	64.8888
>>>>>>>eeeee]eeeee:::::::::	chr11:27516821-27517126(-)$1	305	82	109	55.6296
^^^^^^^^^^^^^^^^^^^^dddd:ff	chr1:36386800-36387016(+)$1	216	84	111	59.0555
:::::::::::::::::::::::::::	chr1:12677569-12677829(-)$1	260	9	36	67.4814
:::::::::::================	chr12:22839707-22839986(+)$1	279	81	108	65.2592
iiiiiii^^^^^^^^^^^^^^^^^^ii	chr12:133348986-133349236(-)$1	250	82	109	64.6111
c[dddd+++++++++++++++++++++	chr1:3806125-3806353(-)$1	228	61	88	57.2037
dd^^^^^^^^^^^^^^^^^^^^^^^dd	chr17:30701149-30701411(+)$1	262	82	109	68.4074
JJJJJJJJJ{HHHHHHHH:::::::gg	chr1:33145873-33146104(+)$1	231	79	106	56.5555
^^^^^^^^^^^^^^^^^^^^^^^^^ff	chr7:100277606-100277895(-)$1	289	82	109	65.2592
:::::::::::::::::::::::::::	chr3:197401578-197401831(-)$1	253	31	58	54.4259
g::::::::::::::::::ggggggg&	chr1:203771757-203772006(+)$1	249	83	110	55.8148
JJJJCCC::::::::::::::::::::	chr5:148875165-148875373(-)$1	208	40	67	63.4999
:::::::::::::::::::::::::::	chr1:193057216-193057434(+)$1	218	81	108	67.4814
a[bb^^^^^^^^^^^^^^^^^^^^^bb	chr21:45179969-45180232(+)$1	263	81	108	62.8518
^^^^^^^^^^ggggggg]hhhhhhhh:	chr5:36183280-36183537(+)$1	257	81	108	55.7222
mccc:::::::::::::::::::::::	chr1:1498763-1499024(-)$1	261	82	109	63.1296
:::::::::::::::::::::::::HH	chr3:9848116-9848363(+)$1	247	80	107	60.9999
:::::::::::::::::::::::::::	chr3:160154423-160154692(-)$1	269	82	109	68.4074
e!!eeeee[=============mmmm=	chr7:100278770-100279029(-)$1	259	23	50	57.4814
C}CCC::::::::::::::::::HHHH	chr6:24719240-24719490(-)$1	250	83	110	54.7962
:::::::::::::::::::::::::::	chr2:188330076-188330297(-)$1	221	51	78	55.9074
fffff::::::::ffffffooooooff	chr2:29170651-29170933(+)$1	282	79	106	66.4629
EEEE@@@@@@@@@@@@@@@@@@@@DDD	chrX:48770824-48771115(-)$1	291	259	286	56.7407
ooooooffffff::::::::::::fff	chr6:33269245-33269498(-)$1	253	123	150	58.6851
HHHH:::::::::::::::::::::::	chr3:9519289-9519511(+)$1	222	71	98	57.9444
ffffff^^^^^^^^^^^^^^^^^^^ff	chr11:65764639-65764905(-)$1	266	83	110	68.1296
HHHH:::::::::::::::::::::::	chr3:9519311-9519526(+)$1	215	49	76	57.9444
:::::::::::::::::::::::::::	chr11:61133852-61134111(+)$1	259	81	108	59.9814
::::::::::::::::::::::::ggg	chr19:33203201-33203465(+)$1	264	83	110	68.4074
c[dddd+++++++++++++++++++++	chr1:3806153-3806370(-)$1	217	78	105	57.2037
:::::::::::::::::::::::::::	chr19:12833191-12833478(-)$1	287	77	104	67.2037
JJJJCCC::::::::::::::::::::	chr5:148875173-148875380(-)$1	207	47	74	63.4999
ggggg::::::::::::::::::::::	chr6:7287010-7287257(-)$1	247	83	110	59.7962

#DB
.....))))))))))))).....((((	chr12:54627821-54628070(-)$1	1	83	110	68.4074
(((((((....................	chr5:148875180-148875412(-)$1	1	79	106	63.4999
)))))))))))))))).)))......(	chr3:152881388-152881617(+)$1	1	59	86	60.2592
(..........................	chr19:973018-973287(+)$1	1	82	109	54.9814
)).......................))	chrX:48770614-48770939(-)$1	1	83	110	56.7407
)))............(((((......)	chr17:17115683-17115894(-)$1	1	79	106	67.4814
...........................	chr4:77996929-77997146(-)$1	1	84	111	53.8703
...))))))).....)))..))))).)	chr6:21232149-21232443(+)$1	1	81	108	59.8888
))))))))))))...........))))	chr6:150047394-150047638(-)$1	1	81	108	60.5370
(((((((((.((((((((.......((	chr1:33145904-33146144(+)$1	1	48	75	56.5555
)))......)))).)))).......))	chr17:79845685-79845939(-)$1	1	79	106	62.6666
...........................	chr2:29023057-29023273(+)$1	1	33	60	68.1296
..((((((((........(((((((((	chr3:196659531-196659783(+)$1	1	71	98	66.0925
........................(((	chr1:193057234-193057467(+)$1	1	63	90	67.4814
)))....................))))	chr11:62360765-62361019(-)$1	1	79	106	64.8888
)).........................	chr1:113212896-113213163(+)$1	1	78	105	60.5370
..................(((((.((.	chr2:29023009-29023257(+)$1	1	81	108	68.1296
)))))))...))))).)))))...)))	chr7:117825223-117825493(+)$1	1	82	109	58.4999
)))....))).)))))))....(((((	chr7:56147870-56148185(+)$1	1	81	108	68.1296
.......................))))	chr3:196659520-196659731(+)$1	1	82	109	66.0925
(.(((((....................	chr3:10142982-10143239(+)$1	1	77	104	64.8888
.......))))).))))).........	chr11:27516821-27517126(-)$1	1	82	109	55.6296
....................)))).((	chr1:36386800-36387016(+)$1	1	84	111	59.0555
...........................	chr1:12677569-12677829(-)$1	1	9	36	67.4814
...........((((((((((((((((	chr12:22839707-22839986(+)$1	1	81	108	65.2592
(((((((..................))	chr12:133348986-133349236(-)$1	1	82	109	64.6111
(.((((.....................	chr1:3806125-3806353(-)$1	1	61	88	57.2037
((.......................))	chr17:30701149-30701411(+)$1	1	82	109	68.4074
(((((((((.((((((((.......((	chr1:33145873-33146104(+)$1	1	79	106	56.5555
.........................))	chr7:100277606-100277895(-)$1	1	82	109	65.2592
...........................	chr3:197401578-197401831(-)$1	1	31	58	54.4259
)..................(((((((.	chr1:203771757-203772006(+)$1	1	83	110	55.8148
(((((((....................	chr5:148875165-148875373(-)$1	1	40	67	63.4999
...........................	chr1:193057216-193057434(+)$1	1	81	108	67.4814
(.((.....................))	chr21:45179969-45180232(+)$1	1	81	108	62.8518
..........))))))).)))))))).	chr5:36183280-36183537(+)$1	1	81	108	55.7222
.))).......................	chr1:1498763-1499024(-)$1	1	82	109	63.1296
.........................((	chr3:9848116-9848363(+)$1	1	80	107	60.9999
...........................	chr3:160154423-160154692(-)$1	1	82	109	68.4074
(..(((((.(((((((((((((....)	chr7:100278770-100279029(-)$1	1	23	50	57.4814
).)))..................((((	chr6:24719240-24719490(-)$1	1	83	110	54.7962
...........................	chr2:188330076-188330297(-)$1	1	51	78	55.9074
)))))........((((((......))	chr2:29170651-29170933(+)$1	1	79	106	66.4629
))))....................)))	chrX:48770824-48771115(-)$1	1	259	286	56.7407
......))))))............(((	chr6:33269245-33269498(-)$1	1	123	150	58.6851
((((.......................	chr3:9519289-9519511(+)$1	1	71	98	57.9444
((((((...................))	chr11:65764639-65764905(-)$1	1	83	110	68.1296
((((.......................	chr3:9519311-9519526(+)$1	1	49	76	57.9444
...........................	chr11:61133852-61134111(+)$1	1	81	108	59.9814
........................(((	chr19:33203201-33203465(+)$1	1	83	110	68.4074
(.((((.....................	chr1:3806153-3806370(-)$1	1	78	105	57.2037
...........................	chr19:12833191-12833478(-)$1	1	77	104	67.2037
(((((((....................	chr5:148875173-148875380(-)$1	1	47	74	63.4999
)))))......................	chr6:7287010-7287257(-)$1	1	83	110	59.7962

#PSSM
u : 0.66	U : 0.20	G : 0.05	A : 0.05	a : 0.01	
u : 0.40	C : 0.18	c : 0.16	g : 0.09	G : 0.09	A : 0.05	
u : 0.74	A : 0.11	C : 0.05	U : 0.05	g : 0.03	
u : 0.81	U : 0.07	A : 0.05	g : 0.01	c : 0.01	G : 0.01	
u : 0.87	c : 0.05	g : 0.03	C : 0.01	U : 0.01	
u : 0.90	g : 0.03	U : 0.03	c : 0.01	
u : 0.87	c : 0.09	A : 0.01	U : 0.01	
u : 0.98	U : 0.01	
u : 0.94	c : 0.03	G : 0.01	
u : 0.90	g : 0.03	c : 0.03	G : 0.01	
u : 0.96	c : 0.01	U : 0.01	
u : 0.92	g : 0.05	U : 0.01	
u : 0.98	U : 0.01	
u : 0.98	U : 0.01	
u : 0.98	U : 0.01	
u : 0.94	c : 0.01	g : 0.01	U : 0.01	
u : 0.98	U : 0.01	
u : 0.96	c : 0.01	U : 0.01	
u : 0.98	U : 0.01	
u : 0.98	U : 0.01	
u : 0.94	c : 0.01	G : 0.01	U : 0.01	
u : 0.94	U : 0.03	a : 0.01	
u : 0.92	C : 0.01	a : 0.01	g : 0.01	U : 0.01	
u : 0.96	U : 0.03	
u : 0.94	U : 0.03	G : 0.01	
g : 0.33	u : 0.31	G : 0.18	A : 0.11	c : 0.01	a : 0.01	U : 0.01	
a : 0.37	A : 0.31	u : 0.18	G : 0.03	U : 0.03	C : 0.03	c : 0.01	

#score	3339.7407407407372
#seq	54
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_transcript_m1_run1.nuc.txt

#NT
ucucucucuuucucucucucucucugucucucugucucucu	chr13:94625063-94625375(+)$1	312	83	124	59.0204
cuuuucuuuucuuuucuuccuuucuucuuuccuuuuuuucu	chr5:60659753-60660029(+)$1	276	75	116	48.1020
uucuuuccuuucuuuuucuuuuuuucucuuuccuuccuuuc	chr10:20075935-20076201(+)$1	266	85	126	48.0000
uuccuuucuuucuuucuuuuuuucguucguucguuccuucc	chr13:21095287-21095588(-)$1	301	256	297	59.4285
uuucuuucuuucuuucuuucuuucuuucuuucuuucuuucu	chr6:148628121-148628370(+)$1	249	39	80	83.2040
uuucucucucucucuccuucucuccccuuccuuuucucucu	chr2:128704441-128704725(-)$1	284	109	150	49.0204
uuuccucccuuccuuccuucuuuccuuucuucuuucuuucu	chr2:72889015-72889294(-)$1	279	89	130	55.5510
uuuuucucucucucucuuucucauuuccuuuucucccuucu	chr22:25908348-25908578(+)$1	230	49	90	47.3877
uuucuuucuuucuuucuuucuuucuuucuuucuuucuuucu	chr7:78606565-78606878(-)$1	313	36	77	83.2040
uucuuucuuuucuuucuuuccuucuuuucuuucuucuuucu	chr19:55710879-55711126(-)$1	247	112	153	57.7959
uuucucucucucucucuuuccuuccuuccuuccuucuuuuc	chr16:78759950-78760237(+)$1	287	119	160	56.2653
uguuuucuuuucuuucuuucuuucuuucuuucuuucucuuu	chr3:196687445-196687669(-)$1	224	24	65	65.4489
uuccuuccuuccuuucuuuccuuuuuucuuucuuuucuuuu	chr5:141967919-141968179(+)$1	260	44	85	61.6734
cuucucccucccucccuuccuuccuuccuuccuuucuuuuu	chr4:129241520-129241816(+)$1	296	34	75	49.0204
ucucuuuuucucuuucucucuuucucuuucugugucucucu	chr16:78759731-78760082(+)$1	351	297	338	54.9387
GUUCGUUCGuucuuucuuucuuucuuucuuucuuucucucu	chr2:39713761-39714019(+)$1	258	188	229	68.0000
uuccuuccuuccuuucaucuuuuuucuuccucuuucuuucc	chr17:53107564-53107880(+)$1	316	100	141	50.2448
uuccuuucuuuuccauuuucuuuccuucuuuuuuuuuuuuu	chr8:25175854-25176125(+)$1	271	226	267	50.0408
uuccuuccuuccuuccucucucucucucuuucuuUCuuucu	chr12:110606750-110607029(+)$1	279	120	161	68.4081
uuucuuucuuucuuucuuucuuucuuucuuucuuucuuucu	chr6:37864229-37864493(+)$1	264	61	102	83.2040
uccuucccucucuuucucucucuuucucuuucacucucucu	chr18:18535999-18536289(-)$1	290	118	159	51.5714
uuucuuucuuucuuucuuucuuucuuucuuucuuucuuucu	chr20:22542410-22542691(-)$1	281	80	121	83.2040
uuccuuucucccuuucuccuucucuccuuuucuuucucucu	chr15:41981431-41981741(+)$1	310	127	168	56.3673
uuucuuucuuucuuucuuucuuucuuucuuucuuucuuucu	chr18:55901282-55901565(+)$1	283	3	44	83.2040
uuucuuucuuucuuucuuucuuucucuuucucucuuucucu	chr7:104691035-104691324(+)$1	289	77	118	68.2040
Cuucuuucuuucucccuuuccuuuccucucucuguuuuucu	chr10:114923147-114923377(+)$1	230	34	75	52.7959
uuccuuccuuccuuccaaucuuccuuccuuccuuccuuccu	chr6:4852680-4852964(+)$1	284	70	111	48.5102
uuucucugucucuuucuuuuucucuuuccuuuuuucuucau	chr12:23778852-23779107(-)$1	255	48	89	55.0408
UGUUUUUCUCUCUCUCAUACUCUUUUUCUUUcucuccuucu	chr6:111744567-111744816(-)$1	249	76	117	52.8979
uuuccuccuucucucccuucuuuccuucuuucuuucccucc	chr4:79111620-79111938(+)$1	318	80	121	47.7959
uuccucucucucucuccuuccuuccuccuugcuuucuuUAU	chr11:10329777-10330059(+)$1	282	116	157	53.5102
ucucucucuuucucucucucucucucucucucucucucucc	chr6:151390278-151390566(+)$1	288	99	140	57.6938
uuccucucucucucucucucucucucuuuuucucucuUUCU	chr2:217391750-217392097(+)$1	347	163	204	63.4081
uuucuuucugcuuucccuucucucuauucuucccucuuucu	chr4:159785823-159786087(+)$1	264	207	248	50.2448
cuuccuccuuccuuccuucccuccuuucuuuuuuccuuccu	chr1:177919736-177920027(-)$1	291	1	42	47.0816
uuucuuucuuucuuucuuucuuucuuucuuucuuucuuucu	chr19:52360450-52360724(-)$1	274	42	83	83.2040
uucuuuucuuucuuucuuucuuuucuuuuuucuuuucuuuu	chrX:119577706-119577942(-)$1	236	10	51	60.0408
uuucuuucuuucuuucuuucuuucuuucuuucuuucuuucu	chr17:56482948-56483170(-)$1	222	44	85	83.2040
uuccucccuuccuuucuuccucuuuuucuuuucuucucucu	chr17:42495338-42495636(-)$1	298	84	125	60.3469
ccucucucuuucuuucucucucucuuucucuuucuuuguuu	chr10:15177735-15178003(-)$1	268	59	100	51.6734
cuucuuucuuucuuucuuuuucuuucuuucuuucucuuucc	chr17:64220524-64220764(-)$1	240	18	59	55.1428
uuccuuccuuccuuccuuccuuccuuuccuuccuuccuucu	chr1:162258963-162259233(+)$1	270	80	121	58.3061
ucucuuucuuucuuucuuucuuucuuucuuucuuucuuucu	chr2:203249198-203249464(+)$1	266	53	94	79.8367
uucguucuuuccuuucuuccuuccucucuuuuucucucucu	chr17:49128161-49128465(-)$1	304	133	174	54.7346
uuucuaucucucucucuuucuuucucucuuugacuuucugu	chr5:142473011-142473297(+)$1	286	44	85	54.6326
ucucugccucucuuccucugucucucucucccucucugucu	chr6:11037054-11037330(-)$1	276	44	85	46.6734
uuccuuuccuucuuuccuuccuucuuucuucucuucucucu	chr12:131469276-131469626(+)$1	350	130	171	59.3265
uuucuuucuuucuuucuuucuuucuuucuuucuuucuuucu	chr11:70445800-70446058(-)$1	258	3	44	83.2040

#otherMatches

#Struct PSSM
:::::::::::::::::::::::::::::::::::::::::	chr10:98672234-98672553(+)$1	319	115	156	57.7959
]a666666eeeee::::::::::::BB{HHHHHHHH:::::	chr13:94625063-94625375(+)$1	312	83	124	59.0204
:::::::::::::::::::::::::::::::::::::::::	chr5:60659753-60660029(+)$1	276	75	116	48.1020
:::::::::::::::::::::::::::::::::::::::::	chr10:20075935-20076201(+)$1	266	85	126	48.0000
:::::::::::::::::::::::bboooooobb::::GGGG	chr13:21095287-21095588(-)$1	301	256	297	59.4285
:::::::::::::::::::::::::::::::::::::::::	chr6:148628121-148628370(+)$1	249	39	80	83.2040
:::::::::::::::::::::::::::::::::::::::::	chr2:128704441-128704725(-)$1	284	109	150	49.0204
:::::::::::::::::::::::::::::::::::::::::	chr2:72889015-72889294(-)$1	279	89	130	55.5510
::::::::::::::::::::ffffff"""eeeee[eeeee"	chr22:25908348-25908578(+)$1	230	49	90	47.3877
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:78606565-78606878(-)$1	313	36	77	83.2040
:::::::::::::::::::::::::::::::::::::::EE	chr19:55710879-55711126(-)$1	247	112	153	57.7959
:::::::::::::::::::::::::::::::::::::::::	chr16:78759950-78760237(+)$1	287	119	160	56.2653
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:196687445-196687669(-)$1	224	24	65	65.4489
:::::::::::::::::::::::::::::::::::::::::	chr5:141967919-141968179(+)$1	260	44	85	61.6734
:::::::::::::::::::::::::::::::::::::::::	chr4:129241520-129241816(+)$1	296	34	75	49.0204
:::::::::::::::::::::::::::::::::::::::::	chr16:78759731-78760082(+)$1	351	297	338	54.9387
cc:::CCC}EEEEE}IIIIIIIIIYYJJJJJJJJJJJJJJJ	chr2:39713761-39714019(+)$1	258	188	229	68.0000
FFFFF::::::::::::::::::::::::::::::::::::	chr17:53107564-53107880(+)$1	316	100	141	50.2448
:::::::::::::::::::::::::::::::::::::::::	chr8:25175854-25176125(+)$1	271	226	267	50.0408
::ccc[bb####dddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:110606750-110607029(+)$1	279	120	161	68.4081
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:37864229-37864493(+)$1	264	61	102	83.2040
$$$$$ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr18:18535999-18536289(-)$1	290	118	159	51.5714
gggggggg]===========22eeeeeJJJJJJJJJJJJA{	chr20:22542410-22542691(-)$1	281	80	121	83.2040
:::::::::::::::::::::::::::::::::::::::::	chr15:41981431-41981741(+)$1	310	127	168	56.3673
:::::::::::::::::::::::::::::::::::::::::	chr18:55901282-55901565(+)$1	283	3	44	83.2040
:::::::::::::::::::::::::::::::::::::::::	chr7:104691035-104691324(+)$1	289	77	118	68.2040
b22bb:::::::::::::::::::FFFFFFLLLEEEEE:::	chr10:114923147-114923377(+)$1	230	34	75	52.7959
:::::::::::::::::::::::::::::::::::::::::	chr6:4852680-4852964(+)$1	284	70	111	48.5102
JJ:::::::::::::::::::::::::::::::::::::::	chr12:23778852-23779107(-)$1	255	48	89	55.0408
ggggggg::::::::::::::::::::::::::::::::::	chr6:111744567-111744816(-)$1	249	76	117	52.8979
^^^^^^^^^^^^^^^^^^^ddddeeeee:::::::::::::	chr4:79111620-79111938(+)$1	318	80	121	47.7959
hhh[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:10329777-10330059(+)$1	282	116	157	53.5102
:::::::::::::::::::::::::::::::::::::::::	chr6:151390278-151390566(+)$1	288	99	140	57.6938
:::::::::::::::::::::::::::::::::::::::::	chr2:217391750-217392097(+)$1	347	163	204	63.4081
:::::::::::::::::::::::::::::::::::::::::	chr4:159785823-159786087(+)$1	264	207	248	50.2448
:::::::::::::::::::::::::::::::::::::::::	chr1:177919736-177920027(-)$1	291	1	42	47.0816
:::::::::::::::::::::::::::::::::::::::::	chr19:52360450-52360724(-)$1	274	42	83	83.2040
:::::::::::::::::::::::::::::::::::::::::	chrX:119577706-119577942(-)$1	236	10	51	60.0408
:::::::::::::::::::::::::::::::::::::::::	chr17:56482948-56483170(-)$1	222	44	85	83.2040
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:42495338-42495636(-)$1	298	84	125	60.3469
fff22a]dddd::::::::::::::::::::::::::::::	chr10:15177735-15178003(-)$1	268	59	100	51.6734
:::::::::::::::::::::::::::::::::::::::::	chr17:64220524-64220764(-)$1	240	18	59	55.1428
:::::::::::::::::::::::::::::::::::::::::	chr1:162258963-162259233(+)$1	270	80	121	58.3061
:::::::::::::::::::::::::::::::::::::::::	chr2:203249198-203249464(+)$1	266	53	94	79.8367
::::::::::::::::::::::::DDDD{GGGGGGG::bb!	chr17:49128161-49128465(-)$1	304	133	174	54.7346
:::::::::::::::::::::::::::::::cccnnnnncc	chr5:142473011-142473297(+)$1	286	44	85	54.6326
PPPPEEEEE::::::::::::::::::::::::::::::::	chr6:11037054-11037330(-)$1	276	44	85	46.6734
D::::::::::::::::::::::::::::::::::::::::	chr12:131469276-131469626(+)$1	350	130	171	59.3265
:::::::::::::::::::::::::::::::::::::::::	chr11:70445800-70446058(-)$1	258	3	44	83.2040

#DB
.........................................	chr10:98672234-98672553(+)$1	1	115	156	57.7959
.)......)))))............((.((((((((.....	chr13:94625063-94625375(+)$1	1	83	124	59.0204
.........................................	chr5:60659753-60660029(+)$1	1	75	116	48.1020
.........................................	chr10:20075935-20076201(+)$1	1	85	126	48.0000
.......................((......))....))))	chr13:21095287-21095588(-)$1	1	256	297	59.4285
.........................................	chr6:148628121-148628370(+)$1	1	39	80	83.2040
.........................................	chr2:128704441-128704725(-)$1	1	109	150	49.0204
.........................................	chr2:72889015-72889294(-)$1	1	89	130	55.5510
....................((((((...(((((.(((((.	chr22:25908348-25908578(+)$1	1	49	90	47.3877
.........................................	chr7:78606565-78606878(-)$1	1	36	77	83.2040
.......................................((	chr19:55710879-55711126(-)$1	1	112	153	57.7959
.........................................	chr16:78759950-78760237(+)$1	1	119	160	56.2653
.........................................	chr3:196687445-196687669(-)$1	1	24	65	65.4489
.........................................	chr5:141967919-141968179(+)$1	1	44	85	61.6734
.........................................	chr4:129241520-129241816(+)$1	1	34	75	49.0204
.........................................	chr16:78759731-78760082(+)$1	1	297	338	54.9387
))...))).))))).)))))))))..)))))))))))))))	chr2:39713761-39714019(+)$1	1	188	229	68.0000
(((((....................................	chr17:53107564-53107880(+)$1	1	100	141	50.2448
.........................................	chr8:25175854-25176125(+)$1	1	226	267	50.0408
..(((.((....((((.........................	chr12:110606750-110607029(+)$1	1	120	161	68.4081
.........................................	chr6:37864229-37864493(+)$1	1	61	102	83.2040
.....(((.................................	chr18:18535999-18536289(-)$1	1	118	159	51.5714
)))))))).)))))))))))..)))))(((((((((((((.	chr20:22542410-22542691(-)$1	1	80	121	83.2040
.........................................	chr15:41981431-41981741(+)$1	1	127	168	56.3673
.........................................	chr18:55901282-55901565(+)$1	1	3	44	83.2040
.........................................	chr7:104691035-104691324(+)$1	1	77	118	68.2040
)..))...................((((((...(((((...	chr10:114923147-114923377(+)$1	1	34	75	52.7959
.........................................	chr6:4852680-4852964(+)$1	1	70	111	48.5102
((.......................................	chr12:23778852-23779107(-)$1	1	48	89	55.0408
)))))))..................................	chr6:111744567-111744816(-)$1	1	76	117	52.8979
...................))))))))).............	chr4:79111620-79111938(+)$1	1	80	121	47.7959
(((.((...................................	chr11:10329777-10330059(+)$1	1	116	157	53.5102
.........................................	chr6:151390278-151390566(+)$1	1	99	140	57.6938
.........................................	chr2:217391750-217392097(+)$1	1	163	204	63.4081
.........................................	chr4:159785823-159786087(+)$1	1	207	248	50.2448
.........................................	chr1:177919736-177920027(-)$1	1	1	42	47.0816
.........................................	chr19:52360450-52360724(-)$1	1	42	83	83.2040
.........................................	chrX:119577706-119577942(-)$1	1	10	51	60.0408
.........................................	chr17:56482948-56483170(-)$1	1	44	85	83.2040
.........................................	chr17:42495338-42495636(-)$1	1	84	125	60.3469
)))..).))))..............................	chr10:15177735-15178003(-)$1	1	59	100	51.6734
.........................................	chr17:64220524-64220764(-)$1	1	18	59	55.1428
.........................................	chr1:162258963-162259233(+)$1	1	80	121	58.3061
.........................................	chr2:203249198-203249464(+)$1	1	53	94	79.8367
........................((((.(((((((..((.	chr17:49128161-49128465(-)$1	1	133	174	54.7346
...............................(((.....))	chr5:142473011-142473297(+)$1	1	44	85	54.6326
....(((((................................	chr6:11037054-11037330(-)$1	1	44	85	46.6734
(........................................	chr12:131469276-131469626(+)$1	1	130	171	59.3265
.........................................	chr11:70445800-70446058(-)$1	1	3	44	83.2040

#PSSM
u : 0.83	c : 0.10	G : 0.02	C : 0.02	U : 0.02	
u : 0.79	c : 0.14	g : 0.02	U : 0.02	G : 0.02	
u : 0.59	c : 0.36	U : 0.04	
c : 0.79	u : 0.14	C : 0.02	U : 0.02	g : 0.02	
u : 0.89	c : 0.06	G : 0.02	U : 0.02	
u : 0.65	c : 0.26	U : 0.04	a : 0.02	g : 0.02	
u : 0.63	c : 0.32	U : 0.04	
c : 0.83	u : 0.10	C : 0.04	g : 0.02	
u : 0.91	c : 0.04	G : 0.02	U : 0.02	
u : 0.71	c : 0.24	C : 0.02	g : 0.02	
u : 0.69	c : 0.28	U : 0.02	
c : 0.89	u : 0.08	C : 0.02	
u : 0.91	c : 0.06	U : 0.02	
u : 0.75	c : 0.22	C : 0.02	
u : 0.77	c : 0.18	a : 0.02	U : 0.02	
c : 0.93	u : 0.04	C : 0.02	
u : 0.81	c : 0.12	a : 0.04	A : 0.02	
u : 0.75	c : 0.20	a : 0.02	U : 0.02	
u : 0.79	c : 0.18	A : 0.02	
c : 0.83	u : 0.12	C : 0.02	g : 0.02	
u : 0.83	c : 0.14	U : 0.02	
u : 0.69	c : 0.28	C : 0.02	
u : 0.83	c : 0.12	a : 0.02	U : 0.02	
c : 0.79	u : 0.18	U : 0.02	
u : 0.79	c : 0.16	g : 0.02	U : 0.02	
u : 0.63	c : 0.30	g : 0.02	U : 0.02	a : 0.02	
u : 0.81	c : 0.16	U : 0.02	
c : 0.73	u : 0.24	C : 0.02	
u : 0.81	c : 0.14	g : 0.02	U : 0.02	
u : 0.77	c : 0.20	U : 0.02	
u : 0.81	c : 0.14	U : 0.02	g : 0.02	
c : 0.73	u : 0.22	g : 0.04	
u : 0.77	c : 0.16	a : 0.04	g : 0.02	
u : 0.71	c : 0.22	g : 0.06	
u : 0.89	c : 0.08	U : 0.02	
c : 0.81	u : 0.16	C : 0.02	
u : 0.83	c : 0.16	
u : 0.65	c : 0.28	g : 0.04	U : 0.02	
u : 0.87	c : 0.08	U : 0.04	
c : 0.75	u : 0.16	a : 0.02	A : 0.02	C : 0.02	g : 0.02	
u : 0.81	c : 0.14	U : 0.04	

#score	2957.612244897964
#seq	49
#width	41
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_CDS_m3_run1.nuc.txt

#NT
GGAGCUGCG	chr9:101569942-101570380(+)$1	438	304	313	16.3518
GGAGCUGGC	chr19:34919232-34919495(+)$1	263	131	140	20.0555
GGAGCUGGA	chr6:31371352-31371637(+)$1	285	250	259	19.4999
GGAGCAGGU	chr9:139357280-139357577(-)$1	297	106	115	15.0555
GGCGCUGGC	chr16:88717258-88717512(-)$1	254	129	138	16.8148
GGAGCCGGC	chr19:55897973-55898227(+)$1	254	35	44	15.7037
ggggcuggg	chr3:196295789-196296102(+)$1	313	84	93	16.1666
GGAGCUGUG	chr8:48711715-48711984(-)$1	269	118	127	16.2592
ggaggugga	chr19:40331266-40331525(-)$1	259	226	235	15.7037
GGAGCUGGC	chr19:8550707-8551005(+)$1	298	216	225	20.0555
GGAGCUGGC	chr19:8550805-8551049(+)$1	244	118	127	20.0555
GCAGCUggg	chr17:80866136-80866390(+)$1	254	46	55	15.1481
GGAGCUGGC	chr16:74330666-74330962(+)$1	296	151	160	20.0555
ggagcgggc	chr16:2301213-2301457(-)$1	244	61	70	15.9814
GGAGCUGAG	chr1:24118938-24119273(+)$1	335	288	297	15.9814
GGAGCUGGU	chr4:6642859-6643086(+)$1	227	74	83	19.4074
ggcgcuggu	chr7:74489402-74489659(-)$1	257	88	97	16.1666
GGAGCUGGA	chr19:47549171-47549437(-)$1	266	105	114	19.4999
GGCGCUGGG	chr2:74691996-74692401(-)$1	405	202	211	16.7222
GGAGAUGGU	chr9:140446425-140446710(+)$1	285	269	278	15.3333
GGCGCUGGG	chr4:520777-521058(+)$1	281	152	161	16.7222
GGAGCUGGA	chr19:8551122-8551339(+)$1	217	107	116	19.4999
GGAGGUGGA	chr7:104752719-104752984(-)$1	265	126	135	15.7037
GGAGCUCGC	chr5:137089641-137089900(-)$1	259	107	116	15.4259
GGAGCUGGC	chr19:8550849-8551139(+)$1	290	74	83	20.0555
ggcgcuggu	chr7:129710288-129710649(+)$1	361	249	258	16.1666
GGAGCGGGG	chr22:21212832-21213156(-)$1	324	102	111	15.8888
GGAGCUGGG	chr6:109764643-109764923(+)$1	280	125	134	19.9629
GGAGCUGGG	chr17:80789598-80789920(+)$1	322	304	313	19.9629
ggcgcuggc	chr6:170123880-170124234(-)$1	354	23	32	16.8148
GGAGCUGGA	chr19:8551017-8551241(+)$1	224	212	221	19.4999
GGAGCUGUA	chr2:201728827-201729098(-)$1	271	138	147	15.7962
GGCGCUGGC	chr9:131418761-131419066(-)$1	305	117	126	16.8148
GGAGCUGCC	chr21:45432186-45432494(+)$1	308	68	77	16.4444
GGCGCUGGG	chr11:59382807-59383100(-)$1	293	209	218	16.7222
GGAGCUGGU	chr2:11484151-11484474(-)$1	323	125	134	19.4074
GGGGCUGGG	chr16:841744-842018(+)$1	274	129	138	16.1666
GGAGAUGGA	chr17:80789333-80789590(+)$1	257	101	110	15.4259
GGAGCUGCA	chr6:90503375-90503656(-)$1	281	67	76	15.8888
GGAGCUGUC	chr11:108093067-108093362(-)$1	295	30	39	16.3518
GGAGUUGGG	chr7:6071033-6071337(-)$1	304	142	151	15.7962
GGUGCUGGG	chr14:103593470-103593864(+)$1	394	40	49	16.0740
GGAGCUGGC	chr2:97482543-97482864(+)$1	321	301	310	20.0555
GGAGCUCGG	chr11:940787-941074(+)$1	287	226	235	15.3333
GGAGCUGCU	chr9:37784684-37785100(-)$1	416	154	163	15.7962
GGAGCUGUC	chr17:80788533-80788836(+)$1	303	129	138	16.3518
GGAGGUGGU	chr11:61644789-61645083(-)$1	294	146	155	15.6111
GGAGCUGGA	chr7:65446929-65447298(-)$1	369	244	253	19.4999
GGAGGUGGU	chr15:28519468-28519705(-)$1	237	221	230	15.6111
GGAGCUGGA	chr19:8551139-8551370(+)$1	231	90	99	19.4999
ggagcgggc	chr16:2301257-2301524(-)$1	267	128	137	15.9814
GGAGCGGGC	chr20:5986972-5987288(+)$1	316	163	172	15.9814
GGAGCUGCG	chr16:2059503-2059750(-)$1	247	82	91	16.3518

#otherMatches

#Struct PSSM
[dddddddd	chr15:28519431-28519668(-)$1	237	184	193	15.6111
rrrr=====	chr9:101569942-101570380(+)$1	438	304	313	16.3518
ffff22fff	chr19:34919232-34919495(+)$1	263	131	140	20.0555
bb[ddddmm	chr6:31371352-31371637(+)$1	285	250	259	19.4999
ggggggggg	chr9:139357280-139357577(-)$1	297	106	115	15.0555
EEE}BB}BB	chr16:88717258-88717512(-)$1	254	129	138	16.8148
nnnccc]dd	chr19:55897973-55898227(+)$1	254	35	44	15.7037
gggggggll	chr3:196295789-196296102(+)$1	313	84	93	16.1666
22dddd444	chr8:48711715-48711984(-)$1	269	118	127	16.2592
EEEEYYBB:	chr19:40331266-40331525(-)$1	259	226	235	15.7037
hhhhh]ddd	chr19:8550707-8551005(+)$1	298	216	225	20.0555
hhhhh::bb	chr19:8550805-8551049(+)$1	244	118	127	20.0555
ee[cccddd	chr17:80866136-80866390(+)$1	254	46	55	15.1481
FF:ddddgg	chr16:74330666-74330962(+)$1	296	151	160	20.0555
]ccc]bb]b	chr16:2301213-2301457(-)$1	244	61	70	15.9814
bb333hhhh	chr1:24118938-24119273(+)$1	335	288	297	15.9814
dddnnnnnd	chr4:6642859-6643086(+)$1	227	74	83	19.4074
JJJJJJJJJ	chr7:74489402-74489659(-)$1	257	88	97	16.1666
mmmccc:::	chr19:47549171-47549437(-)$1	266	105	114	19.4999
eeeee[fff	chr2:74691996-74692401(-)$1	405	202	211	16.7222
::DDDDZZZ	chr9:140446425-140446710(+)$1	285	269	278	15.3333
eeee[dddd	chr4:520777-521058(+)$1	281	152	161	16.7222
ffffffddd	chr19:8551122-8551339(+)$1	217	107	116	19.4999
b[ffffff%	chr7:104752719-104752984(-)$1	265	126	135	15.7037
####ccc[f	chr5:137089641-137089900(-)$1	259	107	116	15.4259
mmmma22ee	chr19:8550849-8551139(+)$1	290	74	83	20.0555
BB~~~~HHH	chr7:129710288-129710649(+)$1	361	249	258	16.1666
IKKEEEEEK	chr22:21212832-21213156(-)$1	324	102	111	15.8888
!!ccc[===	chr6:109764643-109764923(+)$1	280	125	134	19.9629
F}A}BB}DD	chr17:80789598-80789920(+)$1	322	304	313	19.9629
ddd[bb[bb	chr6:170123880-170124234(-)$1	354	23	32	16.8148
hh:CCC}EE	chr19:8551017-8551241(+)$1	224	212	221	19.4999
===ccc]ee	chr2:201728827-201729098(-)$1	271	138	147	15.7962
ccc]eeeee	chr9:131418761-131419066(-)$1	305	117	126	16.8148
c]ggggggg	chr21:45432186-45432494(+)$1	308	68	77	16.4444
ggg]bb]bb	chr11:59382807-59383100(-)$1	293	209	218	16.7222
bb]ddddEE	chr2:11484151-11484474(-)$1	323	125	134	19.4074
eeGGGGGGG	chr16:841744-842018(+)$1	274	129	138	16.1666
qqqqqqqqe	chr17:80789333-80789590(+)$1	257	101	110	15.4259
ee::FFFFF	chr6:90503375-90503656(-)$1	281	67	76	15.8888
clllccc]=	chr11:108093067-108093362(-)$1	295	30	39	16.3518
EEEEE}EEE	chr7:6071033-6071337(-)$1	304	142	151	15.7962
[a[bb!!ee	chr14:103593470-103593864(+)$1	394	40	49	16.0740
cc]bbbbdd	chr2:97482543-97482864(+)$1	321	301	310	20.0555
ggggg::ee	chr11:940787-941074(+)$1	287	226	235	15.3333
eeeelllee	chr9:37784684-37785100(-)$1	416	154	163	15.7962
dddpppppp	chr17:80788533-80788836(+)$1	303	129	138	16.3518
a[eeeee[b	chr11:61644789-61645083(-)$1	294	146	155	15.6111
cc[cccmmm	chr7:65446929-65447298(-)$1	369	244	253	19.4999
eeeeeeeee	chr15:28519468-28519705(-)$1	237	221	230	15.6111
ffffffddd	chr19:8551139-8551370(+)$1	231	90	99	19.4999
gggggg[cc	chr16:2301257-2301524(-)$1	267	128	137	15.9814
eeeee333d	chr20:5986972-5987288(+)$1	316	163	172	15.9814
iiiiiiii]	chr16:2059503-2059750(-)$1	247	82	91	16.3518

#DB
.((((((((	chr15:28519431-28519668(-)$1	1	184	193	15.6111
....)))))	chr9:101569942-101570380(+)$1	1	304	313	16.3518
))))..)))	chr19:34919232-34919495(+)$1	1	131	140	20.0555
((.((((..	chr6:31371352-31371637(+)$1	1	250	259	19.4999
(((((((((	chr9:139357280-139357577(-)$1	1	106	115	15.0555
))).)).))	chr16:88717258-88717512(-)$1	1	129	138	16.8148
...))).))	chr19:55897973-55898227(+)$1	1	35	44	15.7037
(((((((..	chr3:196295789-196296102(+)$1	1	84	93	16.1666
..))))...	chr8:48711715-48711984(-)$1	1	118	127	16.2592
))))..)).	chr19:40331266-40331525(-)$1	1	226	235	15.7037
))))).)))	chr19:8550707-8551005(+)$1	1	216	225	20.0555
)))))..((	chr19:8550805-8551049(+)$1	1	118	127	20.0555
((.((((((	chr17:80866136-80866390(+)$1	1	46	55	15.1481
((.((((((	chr16:74330666-74330962(+)$1	1	151	160	20.0555
.))).)).)	chr16:2301213-2301457(-)$1	1	61	70	15.9814
))...))))	chr1:24118938-24119273(+)$1	1	288	297	15.9814
(((.....)	chr4:6642859-6643086(+)$1	1	74	83	19.4074
)))))))))	chr7:74489402-74489659(-)$1	1	88	97	16.1666
...)))...	chr19:47549171-47549437(-)$1	1	105	114	19.4999
(((((.(((	chr2:74691996-74692401(-)$1	1	202	211	16.7222
..))))...	chr9:140446425-140446710(+)$1	1	269	278	15.3333
((((.((((	chr4:520777-521058(+)$1	1	152	161	16.7222
)))))))))	chr19:8551122-8551339(+)$1	1	107	116	19.4999
(.((((((.	chr7:104752719-104752984(-)$1	1	126	135	15.7037
....(((.(	chr5:137089641-137089900(-)$1	1	107	116	15.4259
....)..))	chr19:8550849-8551139(+)$1	1	74	83	20.0555
))....)))	chr7:129710288-129710649(+)$1	1	249	258	16.1666
(..(((((.	chr22:21212832-21213156(-)$1	1	102	111	15.8888
..(((.(((	chr6:109764643-109764923(+)$1	1	125	134	19.9629
).).)).))	chr17:80789598-80789920(+)$1	1	304	313	19.9629
(((.((.((	chr6:170123880-170124234(-)$1	1	23	32	16.8148
)).))).))	chr19:8551017-8551241(+)$1	1	212	221	19.4999
)))))).))	chr2:201728827-201729098(-)$1	1	138	147	15.7962
))).)))))	chr9:131418761-131419066(-)$1	1	117	126	16.8148
).)))))))	chr21:45432186-45432494(+)$1	1	68	77	16.4444
))).)).))	chr11:59382807-59383100(-)$1	1	209	218	16.7222
)).))))((	chr2:11484151-11484474(-)$1	1	125	134	19.4074
)))))))))	chr16:841744-842018(+)$1	1	129	138	16.1666
........)	chr17:80789333-80789590(+)$1	1	101	110	15.4259
))..)))))	chr6:90503375-90503656(-)$1	1	67	76	15.8888
(...))).)	chr11:108093067-108093362(-)$1	1	30	39	16.3518
))))).)))	chr7:6071033-6071337(-)$1	1	142	151	15.7962
.(.((..((	chr14:103593470-103593864(+)$1	1	40	49	16.0740
)).))))))	chr2:97482543-97482864(+)$1	1	301	310	20.0555
)))))..((	chr11:940787-941074(+)$1	1	226	235	15.3333
((((...))	chr9:37784684-37785100(-)$1	1	154	163	15.7962
(((......	chr17:80788533-80788836(+)$1	1	129	138	16.3518
(.(((((.(	chr11:61644789-61645083(-)$1	1	146	155	15.6111
((.(((...	chr7:65446929-65447298(-)$1	1	244	253	19.4999
)))))))))	chr15:28519468-28519705(-)$1	1	221	230	15.6111
)))))))))	chr19:8551139-8551370(+)$1	1	90	99	19.4999
((((((.((	chr16:2301257-2301524(-)$1	1	128	137	15.9814
)))))...)	chr20:5986972-5987288(+)$1	1	163	172	15.9814
)))))))).	chr16:2059503-2059750(-)$1	1	82	91	16.3518

#PSSM
G : 0.87	g : 0.12	
G : 0.85	g : 0.12	C : 0.01	
A : 0.74	C : 0.09	a : 0.05	c : 0.05	g : 0.01	G : 0.01	U : 0.01	
G : 0.87	g : 0.12	
C : 0.74	c : 0.11	G : 0.07	A : 0.03	g : 0.01	U : 0.01	
U : 0.79	u : 0.09	g : 0.03	G : 0.03	A : 0.01	C : 0.01	
G : 0.81	g : 0.14	C : 0.03	
G : 0.66	g : 0.14	C : 0.09	U : 0.07	A : 0.01	
G : 0.25	C : 0.25	A : 0.18	U : 0.14	c : 0.05	g : 0.03	u : 0.03	a : 0.01	

#score	924.2962962962955
#seq	54
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_CDS_m2_run2.nuc.txt

#NT
AGGAUG	chr2:198358038-198358287(-)$1	249	89	95	10.8571
AGGUUG	chr15:66169571-66169829(+)$1	258	218	224	10.9464
UGGCUG	chr9:36190910-36191158(+)$1	248	66	72	10.4107
AGGCUG	chr1:36101855-36102104(-)$1	249	125	131	14.3392
AGGCUG	chr12:120637178-120637388(-)$1	210	194	200	14.3392
AAGCUG	chrX:153580459-153580703(-)$1	244	140	146	11.2142
AGGGUG	chr1:109957835-109958088(-)$1	253	137	143	10.8571
AGGCUG	chr2:73479705-73479978(+)$1	273	174	180	14.3392
AGGCUG	chr11:75115107-75115346(+)$1	239	1	7	14.3392
Uggcug	chr2:44209275-44209494(-)$1	219	153	159	10.4107
AUGCUG	chr11:75113295-75113498(+)$1	203	104	110	11.4821
AGGAUG	chr6:75949943-75950172(-)$1	229	72	78	10.8571
AGGCUG	chr17:79479053-79479259(-)$1	206	67	73	14.3392
AGGGUG	chr12:120638432-120638666(-)$1	234	142	148	10.8571
AGGCUG	chr2:73466747-73467013(+)$1	266	117	123	14.3392
AGGAUG	chr3:49133321-49133606(-)$1	285	0	6	10.8571
AGGAUG	chr6:133138518-133138722(+)$1	204	125	131	10.8571
AAGCUG	chr18:43667984-43668270(-)$1	286	117	123	11.2142
AGGCUG	chr1:155260319-155260569(-)$1	250	149	155	14.3392
AGGGUG	chr11:118888060-118888310(-)$1	250	2	8	10.8571
AGACUG	chr21:35275740-35276043(-)$1	303	98	104	10.5892
AUGCUG	chr11:77783969-77784227(-)$1	258	118	124	11.4821
AUGCUG	chr4:109543228-109543448(+)$1	220	1	7	11.4821
AAGCUG	chr7:100861363-100861599(+)$1	236	0	6	11.2142
AGACUG	chr2:55461215-55461440(+)$1	225	59	65	10.5892
AGGUUG	chr17:47490516-47490753(-)$1	237	11	17	10.9464
AGGCUG	chr5:149827046-149827265(-)$1	219	154	160	14.3392
AGACUG	chr8:117669351-117669592(-)$1	241	83	89	10.5892
AUGCUG	chr12:56553744-56553990(+)$1	246	55	61	11.4821
AGACUG	chr12:69995004-69995334(+)$1	330	173	179	10.5892
UGGCUG	chr5:162868123-162868400(+)$1	277	6	12	10.4107
AAGCUG	chr1:173455294-173455551(+)$1	257	123	129	11.2142
AGGCUG	chr8:100899617-100899870(-)$1	253	109	115	14.3392
AGGUUG	chr2:55460449-55460653(+)$1	204	47	53	10.9464
UGGCUG	chr11:125442302-125442563(+)$1	261	122	128	10.4107
AGGUUG	chr2:55460398-55460613(+)$1	215	98	104	10.9464
AGACUG	chr6:26027079-26027313(-)$1	234	71	77	10.5892
AUGCUG	chr11:75115615-75115828(+)$1	213	126	132	11.4821
AUGCUG	chr11:67374340-67374597(+)$1	257	135	141	11.4821
AUGCUG	chr11:75113307-75113523(+)$1	216	92	98	11.4821
UGGCUG	chr11:32617464-32617692(+)$1	228	212	218	10.4107
AGACUG	chr6:33243699-33243940(+)$1	241	92	98	10.5892
AGGCUG	chr2:98263792-98264006(+)$1	214	103	109	14.3392
AGGUUG	chr2:55460421-55460649(+)$1	228	75	81	10.9464
AUGCUG	chr1:8044856-8045129(+)$1	273	7	13	11.4821
aggcug	chr9:140006040-140006307(-)$1	267	243	249	14.3392
UGGCUG	chr12:21791186-21791400(-)$1	214	186	192	10.4107
AGGCUG	chr1:19455425-19455669(-)$1	244	99	105	14.3392
AGGGUG	chrX:48433454-48433685(+)$1	231	214	220	10.8571
AAGCUG	chrX:55035560-55035791(-)$1	231	17	23	11.2142
AUGCUG	chr17:37006348-37006568(-)$1	220	164	170	11.4821
AGACUG	chr11:75111637-75111848(+)$1	211	32	38	10.5892
AGGCUG	chr17:65739936-65740249(+)$1	313	225	231	14.3392
AGGCUG	chr9:139735204-139735463(+)$1	259	99	105	14.3392
AAGCUG	chr12:21794862-21795128(-)$1	266	6	12	11.2142

#otherMatches

#Struct PSSM
IIIIII	chr16:28854100-28854412(-)$1	312	204	210	14.3392
::::GG	chr2:198358038-198358287(-)$1	249	89	95	10.8571
dooooo	chr15:66169571-66169829(+)$1	258	218	224	10.9464
{JJJJJ	chr9:36190910-36191158(+)$1	248	66	72	10.4107
=]ccc2	chr1:36101855-36102104(-)$1	249	125	131	14.3392
33eeee	chr12:120637178-120637388(-)$1	210	194	200	14.3392
mmccc6	chrX:153580459-153580703(-)$1	244	140	146	11.2142
mmeeee	chr1:109957835-109958088(-)$1	253	137	143	10.8571
gggggg	chr2:73479705-73479978(+)$1	273	174	180	14.3392
:::BB{	chr11:75115107-75115346(+)$1	239	1	7	14.3392
fff]ff	chr2:44209275-44209494(-)$1	219	153	159	10.4107
nnccc2	chr11:75113295-75113498(+)$1	203	104	110	11.4821
d]iiii	chr6:75949943-75950172(-)$1	229	72	78	10.8571
""ccc"	chr17:79479053-79479259(-)$1	206	67	73	14.3392
a]dddd	chr12:120638432-120638666(-)$1	234	142	148	10.8571
fffeee	chr2:73466747-73467013(+)$1	266	117	123	14.3392
:IIIII	chr3:49133321-49133606(-)$1	285	0	6	10.8571
====="	chr6:133138518-133138722(+)$1	204	125	131	10.8571
IIIIII	chr18:43667984-43668270(-)$1	286	117	123	11.2142
"fffff	chr1:155260319-155260569(-)$1	250	149	155	14.3392
:CCC{F	chr11:118888060-118888310(-)$1	250	2	8	10.8571
ffffff	chr21:35275740-35276043(-)$1	303	98	104	10.5892
eecccd	chr11:77783969-77784227(-)$1	258	118	124	11.4821
:::BBK	chr4:109543228-109543448(+)$1	220	1	7	11.4821
GGGGGG	chr7:100861363-100861599(+)$1	236	0	6	11.2142
iiimmm	chr2:55461215-55461440(+)$1	225	59	65	10.5892
::::::	chr17:47490516-47490753(-)$1	237	11	17	10.9464
55ccc]	chr5:149827046-149827265(-)$1	219	154	160	14.3392
hhhhh!	chr8:117669351-117669592(-)$1	241	83	89	10.5892
cc]ddd	chr12:56553744-56553990(+)$1	246	55	61	11.4821
]cccGG	chr12:69995004-69995334(+)$1	330	173	179	10.5892
oooooe	chr5:162868123-162868400(+)$1	277	6	12	10.4107
fffff3	chr1:173455294-173455551(+)$1	257	123	129	11.2142
nnnbb]	chr8:100899617-100899870(-)$1	253	109	115	14.3392
qqffff	chr2:55460449-55460653(+)$1	204	47	53	10.9464
b]eeee	chr11:125442302-125442563(+)$1	261	122	128	10.4107
qqffff	chr2:55460398-55460613(+)$1	215	98	104	10.9464
:ggggg	chr6:26027079-26027313(-)$1	234	71	77	10.5892
]bb]ee	chr11:75115615-75115828(+)$1	213	126	132	11.4821
hhhhhh	chr11:67374340-67374597(+)$1	257	135	141	11.4821
nnccc2	chr11:75113307-75113523(+)$1	216	92	98	11.4821
efffff	chr11:32617464-32617692(+)$1	228	212	218	10.4107
!a[ccc	chr6:33243699-33243940(+)$1	241	92	98	10.5892
eee'''	chr2:98263792-98264006(+)$1	214	103	109	14.3392
cc22cc	chr2:55460421-55460649(+)$1	228	75	81	10.9464
MMEEEE	chr1:8044856-8045129(+)$1	273	7	13	11.4821
======	chr9:140006040-140006307(-)$1	267	243	249	14.3392
GYYCCC	chr12:21791186-21791400(-)$1	214	186	192	10.4107
55eeee	chr1:19455425-19455669(-)$1	244	99	105	14.3392
fffJJJ	chrX:48433454-48433685(+)$1	231	214	220	10.8571
EEEE:B	chrX:55035560-55035791(-)$1	231	17	23	11.2142
gggggl	chr17:37006348-37006568(-)$1	220	164	170	11.4821
EEE::f	chr11:75111637-75111848(+)$1	211	32	38	10.5892
e[dddd	chr17:65739936-65740249(+)$1	313	225	231	14.3392
CC}BBD	chr9:139735204-139735463(+)$1	259	99	105	14.3392
Eeeeee	chr12:21794862-21795128(-)$1	266	6	12	11.2142

#DB
((((((	chr16:28854100-28854412(-)$1	1	204	210	14.3392
....((	chr2:198358038-198358287(-)$1	1	89	95	10.8571
(.....	chr15:66169571-66169829(+)$1	1	218	224	10.9464
.(((((	chr9:36190910-36191158(+)$1	1	66	72	10.4107
).))).	chr1:36101855-36102104(-)$1	1	125	131	14.3392
..))))	chr12:120637178-120637388(-)$1	1	194	200	14.3392
..))).	chrX:153580459-153580703(-)$1	1	140	146	11.2142
..))))	chr1:109957835-109958088(-)$1	1	137	143	10.8571
))))))	chr2:73479705-73479978(+)$1	1	174	180	14.3392
...((.	chr11:75115107-75115346(+)$1	1	1	7	14.3392
))).))	chr2:44209275-44209494(-)$1	1	153	159	10.4107
..))).	chr11:75113295-75113498(+)$1	1	104	110	11.4821
).))))	chr6:75949943-75950172(-)$1	1	72	78	10.8571
..(((.	chr17:79479053-79479259(-)$1	1	67	73	14.3392
).))))	chr12:120638432-120638666(-)$1	1	142	148	10.8571
((((((	chr2:73466747-73467013(+)$1	1	117	123	14.3392
.(((((	chr3:49133321-49133606(-)$1	1	0	6	10.8571
(((((.	chr6:133138518-133138722(+)$1	1	125	131	10.8571
((((((	chr18:43667984-43668270(-)$1	1	117	123	11.2142
.(((((	chr1:155260319-155260569(-)$1	1	149	155	14.3392
.(((.(	chr11:118888060-118888310(-)$1	1	2	8	10.8571
))))))	chr21:35275740-35276043(-)$1	1	98	104	10.5892
))))))	chr11:77783969-77784227(-)$1	1	118	124	11.4821
...((.	chr4:109543228-109543448(+)$1	1	1	7	11.4821
((((((	chr7:100861363-100861599(+)$1	1	0	6	11.2142
(((...	chr2:55461215-55461440(+)$1	1	59	65	10.5892
......	chr17:47490516-47490753(-)$1	1	11	17	10.9464
..))).	chr5:149827046-149827265(-)$1	1	154	160	14.3392
(((((.	chr8:117669351-117669592(-)$1	1	83	89	10.5892
)).)))	chr12:56553744-56553990(+)$1	1	55	61	11.4821
.)))((	chr12:69995004-69995334(+)$1	1	173	179	10.5892
.....)	chr5:162868123-162868400(+)$1	1	6	12	10.4107
))))).	chr1:173455294-173455551(+)$1	1	123	129	11.2142
...)).	chr8:100899617-100899870(-)$1	1	109	115	14.3392
..))))	chr2:55460449-55460653(+)$1	1	47	53	10.9464
).))))	chr11:125442302-125442563(+)$1	1	122	128	10.4107
..))))	chr2:55460398-55460613(+)$1	1	98	104	10.9464
.(((((	chr6:26027079-26027313(-)$1	1	71	77	10.5892
.)).))	chr11:75115615-75115828(+)$1	1	126	132	11.4821
))))))	chr11:67374340-67374597(+)$1	1	135	141	11.4821
..))).	chr11:75113307-75113523(+)$1	1	92	98	11.4821
))))))	chr11:32617464-32617692(+)$1	1	212	218	10.4107
.(.(((	chr6:33243699-33243940(+)$1	1	92	98	10.5892
(((...	chr2:98263792-98264006(+)$1	1	103	109	14.3392
))..))	chr2:55460421-55460649(+)$1	1	75	81	10.9464
..((((	chr1:8044856-8045129(+)$1	1	7	13	11.4821
))))))	chr9:140006040-140006307(-)$1	1	243	249	14.3392
)..)))	chr12:21791186-21791400(-)$1	1	186	192	10.4107
..))))	chr1:19455425-19455669(-)$1	1	99	105	14.3392
))))))	chrX:48433454-48433685(+)$1	1	214	220	10.8571
((((.(	chrX:55035560-55035791(-)$1	1	17	23	11.2142
(((((.	chr17:37006348-37006568(-)$1	1	164	170	11.4821
(((..(	chr11:75111637-75111848(+)$1	1	32	38	10.5892
(.((((	chr17:65739936-65740249(+)$1	1	225	231	14.3392
)).))(	chr9:139735204-139735463(+)$1	1	99	105	14.3392
((((((	chr12:21794862-21795128(-)$1	1	6	12	11.2142

#PSSM
A : 0.87	U : 0.10	a : 0.01	
G : 0.69	U : 0.16	A : 0.10	g : 0.03	
G : 0.83	A : 0.12	g : 0.03	
C : 0.73	U : 0.08	A : 0.07	G : 0.07	c : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	

#score	663.892857142858
#seq	56
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_UTR_m2_run2.nuc.txt

#NT
AUUU	chr3:150261659-150261908(-)$1	249	9	13	11.9999
AUUU	chr12:54634553-54634792(-)$1	239	20	24	11.9999
AUUU	chr18:71920519-71920802(-)$1	283	89	93	11.9999
AUUU	chr14:21819666-21819947(-)$1	281	26	30	11.9999
AUUU	chr7:135611511-135611730(-)$1	219	62	66	11.9999
AUUU	chr2:27263901-27264194(+)$1	293	117	121	11.9999
AUUU	chr5:95129764-95130065(+)$1	301	259	263	11.9999
AUUU	chr3:73114807-73115095(+)$1	288	68	72	11.9999
auuu	chr22:39415170-39415437(+)$1	267	202	206	11.9999
AUUU	chr22:21304160-21304402(+)$1	242	41	45	11.9999
AUUU	chr2:85547605-85547868(-)$1	263	166	170	11.9999
AUUU	chr17:65105382-65105669(-)$1	287	105	109	11.9999
AUUU	chr8:99054786-99055036(-)$1	250	1	5	11.9999
AUUU	chr9:114803219-114803480(-)$1	261	107	111	11.9999
AUUU	chr14:81670143-81670414(-)$1	271	7	11	11.9999
AUUU	chr5:112354711-112354966(+)$1	255	58	62	11.9999
AUUU	chr2:171910221-171910464(-)$1	243	2	6	11.9999
AUUU	chr1:205057272-205057545(-)$1	273	1	5	11.9999
AUUU	chr2:74383379-74383642(-)$1	263	231	235	11.9999
AUUU	chr2:26358333-26358574(+)$1	241	24	28	11.9999
AUUU	chr6:38644865-38645112(-)$1	247	6	10	11.9999
AUUU	chr1:40539211-40539481(-)$1	270	102	106	11.9999
AUUU	chr4:79793767-79794051(+)$1	284	191	195	11.9999
AUUU	chrX:154506895-154507149(-)$1	254	92	96	11.9999
AUUU	chr2:188329719-188329993(-)$1	274	90	94	11.9999
AUUU	chr18:19446489-19446780(+)$1	291	203	207	11.9999
AUUU	chr3:98298865-98299123(-)$1	258	29	33	11.9999
auuu	chr4:57326508-57326720(+)$1	212	43	47	11.9999
AUUU	chr5:43291014-43291284(-)$1	270	140	144	11.9999
AUUU	chr17:34051552-34051800(+)$1	248	37	41	11.9999
AUUU	chr11:14526456-14526700(-)$1	244	143	147	11.9999
AUUU	chr5:179036816-179037105(+)$1	289	3	7	11.9999
AUUU	chr16:23583139-23583423(+)$1	284	193	197	11.9999
AUUU	chr12:104742845-104743097(+)$1	252	27	31	11.9999
AUUU	chr4:48424074-48424369(+)$1	295	121	125	11.9999
AUUU	chr5:108670842-108671113(-)$1	271	9	13	11.9999
AUUU	chr2:74441461-74441729(+)$1	268	26	30	11.9999
AUUU	chr2:242291987-242292262(+)$1	275	223	227	11.9999
AUUU	chr17:34001135-34001391(+)$1	256	95	99	11.9999
AUUU	chr10:101910749-101911022(-)$1	273	91	95	11.9999
AUUU	chr13:98046204-98046462(+)$1	258	10	14	11.9999
AUUU	chr7:139107858-139108121(+)$1	263	89	93	11.9999
AUUU	chr3:14239622-14239884(+)$1	262	2	6	11.9999
AUUU	chr4:83860641-83860988(-)$1	347	17	21	11.9999
AUUU	chr17:48458876-48459163(-)$1	287	25	29	11.9999
AUUU	chr22:30730120-30730466(-)$1	346	122	126	11.9999
AUUU	chr2:69552815-69553127(-)$1	312	60	64	11.9999
AUUU	chr12:69235718-69235982(+)$1	264	175	179	11.9999
auuu	chr8:109240416-109240640(-)$1	224	3	7	11.9999
AUUU	chr6:41065377-41065701(+)$1	324	11	15	11.9999
AUUU	chr10:93038516-93038831(+)$1	315	0	4	11.9999
AUUU	chr18:3256001-3256310(+)$1	309	18	22	11.9999
AUUU	chr16:28844717-28844929(+)$1	212	19	23	11.9999
AUUU	chr1:167510428-167510688(-)$1	260	209	213	11.9999
AUUU	chr10:71962619-71962838(-)$1	219	18	22	11.9999
AUUU	chr9:123942390-123942655(-)$1	265	75	79	11.9999
AUUU	chr15:65869973-65870263(+)$1	290	19	23	11.9999
AUUU	chr17:27587684-27587947(-)$1	263	29	33	11.9999
AUUU	chr20:1350337-1350585(-)$1	248	80	84	11.9999
AUUU	chr1:10479803-10480053(+)$1	250	88	92	11.9999
AUUU	chr5:112353572-112353909(+)$1	337	20	24	11.9999
AUUU	chr7:75956107-75956354(-)$1	247	77	81	11.9999
AUUU	chrX:154007146-154007412(-)$1	266	2	6	11.9999
AUUU	chr3:141464137-141464413(+)$1	276	139	143	11.9999
AUUU	chr8:101721586-101721788(-)$1	202	142	146	11.9999
AUUU	chr16:69727804-69728069(+)$1	265	240	244	11.9999
AUUU	chr2:114715895-114716132(+)$1	237	99	103	11.9999
AUUU	chr11:95564337-95564637(+)$1	300	101	105	11.9999
AUUU	chr9:97221927-97222190(+)$1	263	172	176	11.9999
AUUU	chr19:11242700-11242945(+)$1	245	140	144	11.9999
AUUU	chr3:194125979-194126232(-)$1	253	71	75	11.9999
AUUU	chr1:205686141-205686396(-)$1	255	78	82	11.9999
auuu	chr2:70132003-70132260(+)$1	257	86	90	11.9999
AUUU	chr11:6635349-6635629(-)$1	280	88	92	11.9999
AUUU	chr6:109689740-109689958(-)$1	218	16	20	11.9999
AUUU	chr7:106800521-106800803(+)$1	282	71	75	11.9999
AUUU	chr1:110943796-110944046(-)$1	250	0	4	11.9999
AUUU	chr1:229439677-229439957(+)$1	280	80	84	11.9999
auuu	chr5:71501238-71501520(+)$1	282	21	25	11.9999
AUUU	chr3:5221071-5221310(+)$1	239	63	67	11.9999
AUUU	chr17:79476928-79477169(-)$1	241	0	4	11.9999
AUUU	chr16:87438066-87438343(+)$1	277	74	78	11.9999
AUUU	chr2:65539845-65540121(-)$1	276	93	97	11.9999
AUUU	chr19:33088171-33088447(-)$1	276	22	26	11.9999
AUUU	chr12:123745522-123745904(-)$1	382	6	10	11.9999
AUUU	chr15:68479778-68480029(+)$1	251	15	19	11.9999
AUUU	chr8:99054771-99054986(-)$1	215	178	182	11.9999
AUUU	chr1:193059933-193060195(+)$1	262	79	83	11.9999
AUUU	chr1:167511230-167511505(-)$1	275	152	156	11.9999
AUUU	chr6:158734307-158734591(+)$1	284	72	76	11.9999
AUUU	chr22:21305641-21305887(+)$1	246	55	59	11.9999
AUUU	chr5:133942236-133942514(-)$1	278	16	20	11.9999
AUUU	chr5:179156567-179156778(+)$1	211	1	5	11.9999

#otherMatches

#Struct PSSM
::::	chr22:22116492-22116753(-)$1	261	9	13	11.9999
oooo	chr3:150261659-150261908(-)$1	249	9	13	11.9999
rrrr	chr12:54634553-54634792(-)$1	239	20	24	11.9999
ccqq	chr18:71920519-71920802(-)$1	283	89	93	11.9999
RRRR	chr14:21819666-21819947(-)$1	281	26	30	11.9999
eee:	chr7:135611511-135611730(-)$1	219	62	66	11.9999
::::	chr2:27263901-27264194(+)$1	293	117	121	11.9999
::FF	chr5:95129764-95130065(+)$1	301	259	263	11.9999
hhhh	chr3:73114807-73115095(+)$1	288	68	72	11.9999
llee	chr22:39415170-39415437(+)$1	267	202	206	11.9999
c::G	chr22:21304160-21304402(+)$1	242	41	45	11.9999
hhhh	chr2:85547605-85547868(-)$1	263	166	170	11.9999
RIII	chr17:65105382-65105669(-)$1	287	105	109	11.9999
::::	chr8:99054786-99055036(-)$1	250	1	5	11.9999
B{EE	chr9:114803219-114803480(-)$1	261	107	111	11.9999
::cc	chr14:81670143-81670414(-)$1	271	7	11	11.9999
vvvv	chr5:112354711-112354966(+)$1	255	58	62	11.9999
::::	chr2:171910221-171910464(-)$1	243	2	6	11.9999
::::	chr1:205057272-205057545(-)$1	273	1	5	11.9999
::::	chr2:74383379-74383642(-)$1	263	231	235	11.9999
((((	chr2:26358333-26358574(+)$1	241	24	28	11.9999
ffff	chr6:38644865-38645112(-)$1	247	6	10	11.9999
JJJJ	chr1:40539211-40539481(-)$1	270	102	106	11.9999
::::	chr4:79793767-79794051(+)$1	284	191	195	11.9999
]eee	chrX:154506895-154507149(-)$1	254	92	96	11.9999
22gg	chr2:188329719-188329993(-)$1	274	90	94	11.9999
hhhh	chr18:19446489-19446780(+)$1	291	203	207	11.9999
wwww	chr3:98298865-98299123(-)$1	258	29	33	11.9999
gggl	chr4:57326508-57326720(+)$1	212	43	47	11.9999
ffff	chr5:43291014-43291284(-)$1	270	140	144	11.9999
pppp	chr17:34051552-34051800(+)$1	248	37	41	11.9999
::::	chr11:14526456-14526700(-)$1	244	143	147	11.9999
ffff	chr5:179036816-179037105(+)$1	289	3	7	11.9999
D~~~	chr16:23583139-23583423(+)$1	284	193	197	11.9999
SSSS	chr12:104742845-104743097(+)$1	252	27	31	11.9999
hhhh	chr4:48424074-48424369(+)$1	295	121	125	11.9999
llee	chr5:108670842-108671113(-)$1	271	9	13	11.9999
ii[e	chr2:74441461-74441729(+)$1	268	26	30	11.9999
====	chr2:242291987-242292262(+)$1	275	223	227	11.9999
gggg	chr17:34001135-34001391(+)$1	256	95	99	11.9999
pppp	chr10:101910749-101911022(-)$1	273	91	95	11.9999
::::	chr13:98046204-98046462(+)$1	258	10	14	11.9999
55dd	chr7:139107858-139108121(+)$1	263	89	93	11.9999
::::	chr3:14239622-14239884(+)$1	262	2	6	11.9999
:DDD	chr4:83860641-83860988(-)$1	347	17	21	11.9999
cooo	chr17:48458876-48459163(-)$1	287	25	29	11.9999
!!gg	chr22:30730120-30730466(-)$1	346	122	126	11.9999
iiii	chr2:69552815-69553127(-)$1	312	60	64	11.9999
[ccc	chr12:69235718-69235982(+)$1	264	175	179	11.9999
HHHH	chr8:109240416-109240640(-)$1	224	3	7	11.9999
:::I	chr6:41065377-41065701(+)$1	324	11	15	11.9999
:FFF	chr10:93038516-93038831(+)$1	315	0	4	11.9999
LHHH	chr18:3256001-3256310(+)$1	309	18	22	11.9999
eeee	chr16:28844717-28844929(+)$1	212	19	23	11.9999
gggg	chr1:167510428-167510688(-)$1	260	209	213	11.9999
::::	chr10:71962619-71962838(-)$1	219	18	22	11.9999
F{FF	chr9:123942390-123942655(-)$1	265	75	79	11.9999
eeee	chr15:65869973-65870263(+)$1	290	19	23	11.9999
e"""	chr17:27587684-27587947(-)$1	263	29	33	11.9999
bqqq	chr20:1350337-1350585(-)$1	248	80	84	11.9999
''''	chr1:10479803-10480053(+)$1	250	88	92	11.9999
EEEE	chr5:112353572-112353909(+)$1	337	20	24	11.9999
9999	chr7:75956107-75956354(-)$1	247	77	81	11.9999
:::C	chrX:154007146-154007412(-)$1	266	2	6	11.9999
55dd	chr3:141464137-141464413(+)$1	276	139	143	11.9999
99ee	chr8:101721586-101721788(-)$1	202	142	146	11.9999
::::	chr16:69727804-69728069(+)$1	265	240	244	11.9999
g"""	chr2:114715895-114716132(+)$1	237	99	103	11.9999
::::	chr11:95564337-95564637(+)$1	300	101	105	11.9999
::::	chr9:97221927-97222190(+)$1	263	172	176	11.9999
pppp	chr19:11242700-11242945(+)$1	245	140	144	11.9999
ffff	chr3:194125979-194126232(-)$1	253	71	75	11.9999
:::a	chr1:205686141-205686396(-)$1	255	78	82	11.9999
eeee	chr2:70132003-70132260(+)$1	257	86	90	11.9999
iiii	chr11:6635349-6635629(-)$1	280	88	92	11.9999
sssc	chr6:109689740-109689958(-)$1	218	16	20	11.9999
5555	chr7:106800521-106800803(+)$1	282	71	75	11.9999
::::	chr1:110943796-110944046(-)$1	250	0	4	11.9999
ffuu	chr1:229439677-229439957(+)$1	280	80	84	11.9999
gggg	chr5:71501238-71501520(+)$1	282	21	25	11.9999
qqqd	chr3:5221071-5221310(+)$1	239	63	67	11.9999
::::	chr17:79476928-79477169(-)$1	241	0	4	11.9999
HHHH	chr16:87438066-87438343(+)$1	277	74	78	11.9999
::::	chr2:65539845-65540121(-)$1	276	93	97	11.9999
TTTT	chr19:33088171-33088447(-)$1	276	22	26	11.9999
HHHH	chr12:123745522-123745904(-)$1	382	6	10	11.9999
:::E	chr15:68479778-68480029(+)$1	251	15	19	11.9999
bb22	chr8:99054771-99054986(-)$1	215	178	182	11.9999
::ee	chr1:193059933-193060195(+)$1	262	79	83	11.9999
::::	chr1:167511230-167511505(-)$1	275	152	156	11.9999
ee22	chr6:158734307-158734591(+)$1	284	72	76	11.9999
uuuu	chr22:21305641-21305887(+)$1	246	55	59	11.9999
[ggg	chr5:133942236-133942514(-)$1	278	16	20	11.9999
::::	chr5:179156567-179156778(+)$1	211	1	5	11.9999

#DB
....	chr22:22116492-22116753(-)$1	1	9	13	11.9999
....	chr3:150261659-150261908(-)$1	1	9	13	11.9999
....	chr12:54634553-54634792(-)$1	1	20	24	11.9999
((..	chr18:71920519-71920802(-)$1	1	89	93	11.9999
....	chr14:21819666-21819947(-)$1	1	26	30	11.9999
))).	chr7:135611511-135611730(-)$1	1	62	66	11.9999
....	chr2:27263901-27264194(+)$1	1	117	121	11.9999
..))	chr5:95129764-95130065(+)$1	1	259	263	11.9999
((((	chr3:73114807-73115095(+)$1	1	68	72	11.9999
..))	chr22:39415170-39415437(+)$1	1	202	206	11.9999
)..(	chr22:21304160-21304402(+)$1	1	41	45	11.9999
((((	chr2:85547605-85547868(-)$1	1	166	170	11.9999
.(((	chr17:65105382-65105669(-)$1	1	105	109	11.9999
....	chr8:99054786-99055036(-)$1	1	1	5	11.9999
(.((	chr9:114803219-114803480(-)$1	1	107	111	11.9999
..((	chr14:81670143-81670414(-)$1	1	7	11	11.9999
....	chr5:112354711-112354966(+)$1	1	58	62	11.9999
....	chr2:171910221-171910464(-)$1	1	2	6	11.9999
....	chr1:205057272-205057545(-)$1	1	1	5	11.9999
....	chr2:74383379-74383642(-)$1	1	231	235	11.9999
....	chr2:26358333-26358574(+)$1	1	24	28	11.9999
((((	chr6:38644865-38645112(-)$1	1	6	10	11.9999
((((	chr1:40539211-40539481(-)$1	1	102	106	11.9999
....	chr4:79793767-79794051(+)$1	1	191	195	11.9999
.)))	chrX:154506895-154507149(-)$1	1	92	96	11.9999
..))	chr2:188329719-188329993(-)$1	1	90	94	11.9999
((((	chr18:19446489-19446780(+)$1	1	203	207	11.9999
....	chr3:98298865-98299123(-)$1	1	29	33	11.9999
(((.	chr4:57326508-57326720(+)$1	1	43	47	11.9999
((((	chr5:43291014-43291284(-)$1	1	140	144	11.9999
....	chr17:34051552-34051800(+)$1	1	37	41	11.9999
....	chr11:14526456-14526700(-)$1	1	143	147	11.9999
((((	chr5:179036816-179037105(+)$1	1	3	7	11.9999
)...	chr16:23583139-23583423(+)$1	1	193	197	11.9999
....	chr12:104742845-104743097(+)$1	1	27	31	11.9999
((((	chr4:48424074-48424369(+)$1	1	121	125	11.9999
..))	chr5:108670842-108671113(-)$1	1	9	13	11.9999
((.(	chr2:74441461-74441729(+)$1	1	26	30	11.9999
((((	chr2:242291987-242292262(+)$1	1	223	227	11.9999
((((	chr17:34001135-34001391(+)$1	1	95	99	11.9999
....	chr10:101910749-101911022(-)$1	1	91	95	11.9999
....	chr13:98046204-98046462(+)$1	1	10	14	11.9999
..))	chr7:139107858-139108121(+)$1	1	89	93	11.9999
....	chr3:14239622-14239884(+)$1	1	2	6	11.9999
.(((	chr4:83860641-83860988(-)$1	1	17	21	11.9999
(...	chr17:48458876-48459163(-)$1	1	25	29	11.9999
..((	chr22:30730120-30730466(-)$1	1	122	126	11.9999
))))	chr2:69552815-69553127(-)$1	1	60	64	11.9999
.(((	chr12:69235718-69235982(+)$1	1	175	179	11.9999
((((	chr8:109240416-109240640(-)$1	1	3	7	11.9999
...(	chr6:41065377-41065701(+)$1	1	11	15	11.9999
.(((	chr10:93038516-93038831(+)$1	1	0	4	11.9999
.(((	chr18:3256001-3256310(+)$1	1	18	22	11.9999
((((	chr16:28844717-28844929(+)$1	1	19	23	11.9999
((((	chr1:167510428-167510688(-)$1	1	209	213	11.9999
....	chr10:71962619-71962838(-)$1	1	18	22	11.9999
(.((	chr9:123942390-123942655(-)$1	1	75	79	11.9999
((((	chr15:65869973-65870263(+)$1	1	19	23	11.9999
(...	chr17:27587684-27587947(-)$1	1	29	33	11.9999
(...	chr20:1350337-1350585(-)$1	1	80	84	11.9999
....	chr1:10479803-10480053(+)$1	1	88	92	11.9999
((((	chr5:112353572-112353909(+)$1	1	20	24	11.9999
....	chr7:75956107-75956354(-)$1	1	77	81	11.9999
...(	chrX:154007146-154007412(-)$1	1	2	6	11.9999
..))	chr3:141464137-141464413(+)$1	1	139	143	11.9999
..))	chr8:101721586-101721788(-)$1	1	142	146	11.9999
....	chr16:69727804-69728069(+)$1	1	240	244	11.9999
(...	chr2:114715895-114716132(+)$1	1	99	103	11.9999
....	chr11:95564337-95564637(+)$1	1	101	105	11.9999
....	chr9:97221927-97222190(+)$1	1	172	176	11.9999
....	chr19:11242700-11242945(+)$1	1	140	144	11.9999
))))	chr3:194125979-194126232(-)$1	1	71	75	11.9999
...(	chr1:205686141-205686396(-)$1	1	78	82	11.9999
))))	chr2:70132003-70132260(+)$1	1	86	90	11.9999
))))	chr11:6635349-6635629(-)$1	1	88	92	11.9999
...)	chr6:109689740-109689958(-)$1	1	16	20	11.9999
....	chr7:106800521-106800803(+)$1	1	71	75	11.9999
....	chr1:110943796-110944046(-)$1	1	0	4	11.9999
((..	chr1:229439677-229439957(+)$1	1	80	84	11.9999
))))	chr5:71501238-71501520(+)$1	1	21	25	11.9999
...)	chr3:5221071-5221310(+)$1	1	63	67	11.9999
....	chr17:79476928-79477169(-)$1	1	0	4	11.9999
((((	chr16:87438066-87438343(+)$1	1	74	78	11.9999
....	chr2:65539845-65540121(-)$1	1	93	97	11.9999
....	chr19:33088171-33088447(-)$1	1	22	26	11.9999
((((	chr12:123745522-123745904(-)$1	1	6	10	11.9999
...(	chr15:68479778-68480029(+)$1	1	15	19	11.9999
))..	chr8:99054771-99054986(-)$1	1	178	182	11.9999
..((	chr1:193059933-193060195(+)$1	1	79	83	11.9999
....	chr1:167511230-167511505(-)$1	1	152	156	11.9999
))..	chr6:158734307-158734591(+)$1	1	72	76	11.9999
....	chr22:21305641-21305887(+)$1	1	55	59	11.9999
.(((	chr5:133942236-133942514(-)$1	1	16	20	11.9999
....	chr5:179156567-179156778(+)$1	1	1	5	11.9999

#PSSM
A : 0.94	a : 0.05	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	

#score	1127.9999999999995
#seq	94
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_transcript_m1_run2.nuc.txt

#NT
UCA	chr16:28847368-28847618(+)$1	250	29	32	9.0000
UCA	chr19:46178019-46178308(+)$1	289	129	132	9.0000
UCA	chr2:69572859-69573108(-)$1	249	52	55	9.0000
UCA	chr1:6711406-6711664(-)$1	258	45	48	9.0000
UCA	chr6:18249701-18249952(-)$1	251	38	41	9.0000
UCA	chr16:2820158-2820409(+)$1	251	111	114	9.0000
UCA	chr3:186502416-186502656(+)$1	240	37	40	9.0000
UCA	chr19:893462-893666(+)$1	204	12	15	9.0000
UCA	chr11:66367052-66367314(+)$1	262	22	25	9.0000
UCA	chr16:81703793-81704005(+)$1	212	17	20	9.0000
UCA	chr1:11083311-11083571(+)$1	260	29	32	9.0000
UCA	chr7:12432999-12433290(-)$1	291	27	30	9.0000
UCA	chr11:71719548-71719813(-)$1	265	67	70	9.0000
UCA	chr12:46764368-46764621(-)$1	253	89	92	9.0000
UCA	chr11:5290513-5290753(-)$1	240	65	68	9.0000
UCA	chr12:125270684-125270965(-)$1	281	40	43	9.0000
UCA	chr1:182847238-182847511(+)$1	273	40	43	9.0000
UCA	chr17:80039304-80039543(-)$1	239	114	117	9.0000
UCA	chr1:47779504-47779786(-)$1	282	59	62	9.0000
UCA	chr15:58357501-58357793(-)$1	292	0	3	9.0000
UCA	chr5:180664426-180664677(-)$1	251	4	7	9.0000
UCA	chr6:133136158-133136405(+)$1	247	14	17	9.0000
UCA	chr3:122101823-122102084(-)$1	261	79	82	9.0000
UCA	chr1:226373851-226374161(-)$1	310	65	68	9.0000
UCA	chr5:43298440-43298692(-)$1	252	34	37	9.0000
UCA	chr20:33438855-33439106(-)$1	251	56	59	9.0000
UCA	chr1:156304304-156304581(-)$1	277	6	9	9.0000
UCA	chr16:28844758-28845009(+)$1	251	14	17	9.0000
UCA	chr1:93299146-93299422(+)$1	276	60	63	9.0000
UCA	chr1:22021346-22021632(-)$1	286	46	49	9.0000
UCA	chr2:70454679-70454938(-)$1	259	11	14	9.0000
UCA	chr2:85768798-85769048(+)$1	250	4	7	9.0000
UCA	chr3:3188236-3188507(+)$1	271	24	27	9.0000
UCA	chr9:135854159-135854418(+)$1	259	134	137	9.0000
UCA	chr9:136217110-136217347(+)$1	237	24	27	9.0000
UCA	chr12:109050893-109051158(-)$1	265	26	29	9.0000
UCA	chr2:162242020-162242290(+)$1	270	37	40	9.0000
UCA	chr9:134090670-134090936(+)$1	266	17	20	9.0000
UCA	chr7:44839005-44839293(+)$1	288	43	46	9.0000
UCA	chr1:245011915-245012159(-)$1	244	125	128	9.0000
UCA	chr17:57741276-57741532(+)$1	256	20	23	9.0000
UCA	chr12:104336505-104336748(+)$1	243	43	46	9.0000
UCA	chr13:46732472-46732726(-)$1	254	30	33	9.0000
UCA	chr12:120106116-120106390(+)$1	274	87	90	9.0000
UCA	chr6:53160302-53160511(-)$1	209	10	13	9.0000
UCA	chr22:20112891-20113134(+)$1	243	106	109	9.0000
UCA	chr8:67579853-67580143(+)$1	290	34	37	9.0000
UCA	chr1:39920699-39920953(+)$1	254	3	6	9.0000
UCA	chr3:5022025-5022289(+)$1	264	57	60	9.0000
uca	chr19:45981755-45981960(-)$1	205	28	31	9.0000
UCA	chr9:133489659-133489911(+)$1	252	100	103	9.0000
UCA	chr8:128751188-128751473(+)$1	285	101	104	9.0000
UCA	chr5:167922356-167922638(+)$1	282	23	26	9.0000
UCA	chr16:85691171-85691436(+)$1	265	75	78	9.0000
UCA	chrX:154003474-154003770(+)$1	296	92	95	9.0000
UCA	chr15:93536156-93536439(+)$1	283	23	26	9.0000
UCA	chr3:13393169-13393452(-)$1	283	12	15	9.0000
UCA	chr19:1021487-1021715(+)$1	228	158	161	9.0000
UCA	chr16:81685899-81686146(+)$1	247	26	29	9.0000
uca	chr12:38557143-38557386(-)$1	243	82	85	9.0000
UCA	chr6:49583163-49583404(-)$1	241	46	49	9.0000
UCA	chr1:173836917-173837157(-)$1	240	121	124	9.0000
UCA	chr9:123628946-123629218(-)$1	272	43	46	9.0000
UCA	chr19:11218114-11218384(+)$1	270	4	7	9.0000
UCA	chr2:54119759-54120015(-)$1	256	39	42	9.0000
UCA	chr2:61621812-61622059(-)$1	247	122	125	9.0000
UCA	chr11:61732574-61732821(-)$1	247	4	7	9.0000
UCA	chr2:170429963-170430248(-)$1	285	14	17	9.0000
UCA	chr16:56969156-56969409(+)$1	253	37	40	9.0000
UCA	chr15:93444458-93444708(+)$1	250	81	84	9.0000
UCA	chr2:61753369-61753629(-)$1	260	56	59	9.0000
UCA	chr12:125398953-125399187(-)$1	234	48	51	9.0000
uca	chr12:112845844-112846115(-)$1	271	215	218	9.0000
UCA	chr12:57039433-57039689(-)$1	256	0	3	9.0000
UCA	chr18:216291-216555(-)$1	264	84	87	9.0000
UCA	chr16:68358680-68358968(+)$1	288	7	10	9.0000
UCA	chr1:197091328-197091588(-)$1	260	13	16	9.0000
uca	chr2:32439424-32439631(-)$1	207	4	7	9.0000
UCA	chr1:40035068-40035320(-)$1	252	189	192	9.0000
UCA	chr7:86820271-86820529(+)$1	258	18	21	9.0000
UCA	chr6:30690350-30690610(+)$1	260	95	98	9.0000
UCA	chr17:7476116-7476383(+)$1	267	41	44	9.0000
UCA	chr2:44128238-44128529(-)$1	291	24	27	9.0000
UCA	chr15:72559638-72559894(-)$1	256	114	117	9.0000
UCA	chr16:58593933-58594191(-)$1	258	72	75	9.0000
UCA	chr7:140086479-140086721(-)$1	242	3	6	9.0000
UCA	chr6:49585605-49585857(-)$1	252	12	15	9.0000
UCA	chr1:26799949-26800198(+)$1	249	74	77	9.0000
UCA	chr10:76982092-76982348(+)$1	256	40	43	9.0000
UCA	chr11:810335-810563(+)$1	228	14	17	9.0000
UCA	chr16:2312082-2312351(-)$1	269	104	107	9.0000
UCA	chr6:49582202-49582470(-)$1	268	18	21	9.0000
UCA	chr12:125398987-125399199(-)$1	212	60	63	9.0000
UCA	chr12:110883081-110883328(-)$1	247	9	12	9.0000
UCA	chr17:62532789-62533051(+)$1	262	212	215	9.0000
UCA	chr11:118633724-118633991(-)$1	267	43	46	9.0000
UCA	chr1:40656450-40656705(+)$1	255	15	18	9.0000
UCA	chr6:53160264-53160502(-)$1	238	1	4	9.0000
UCA	chr6:43746583-43746877(+)$1	294	173	176	9.0000

#otherMatches

#Struct PSSM
:::	chr8:103357441-103357696(-)$1	255	42	45	9.0000
DKK	chr16:28847368-28847618(+)$1	250	29	32	9.0000
rrr	chr19:46178019-46178308(+)$1	289	129	132	9.0000
eee	chr2:69572859-69573108(-)$1	249	52	55	9.0000
ff]	chr1:6711406-6711664(-)$1	258	45	48	9.0000
fff	chr6:18249701-18249952(-)$1	251	38	41	9.0000
b!!	chr16:2820158-2820409(+)$1	251	111	114	9.0000
GGG	chr3:186502416-186502656(+)$1	240	37	40	9.0000
:::	chr19:893462-893666(+)$1	204	12	15	9.0000
fdd	chr11:66367052-66367314(+)$1	262	22	25	9.0000
ddd	chr16:81703793-81704005(+)$1	212	17	20	9.0000
II:	chr1:11083311-11083571(+)$1	260	29	32	9.0000
fff	chr7:12432999-12433290(-)$1	291	27	30	9.0000
]dd	chr11:71719548-71719813(-)$1	265	67	70	9.0000
e55	chr12:46764368-46764621(-)$1	253	89	92	9.0000
CCC	chr11:5290513-5290753(-)$1	240	65	68	9.0000
zzz	chr12:125270684-125270965(-)$1	281	40	43	9.0000
ddd	chr1:182847238-182847511(+)$1	273	40	43	9.0000
:ee	chr17:80039304-80039543(-)$1	239	114	117	9.0000
D{D	chr1:47779504-47779786(-)$1	282	59	62	9.0000
:::	chr15:58357501-58357793(-)$1	292	0	3	9.0000
:::	chr5:180664426-180664677(-)$1	251	4	7	9.0000
bbo	chr6:133136158-133136405(+)$1	247	14	17	9.0000
fff	chr3:122101823-122102084(-)$1	261	79	82	9.0000
cll	chr1:226373851-226374161(-)$1	310	65	68	9.0000
hhh	chr5:43298440-43298692(-)$1	252	34	37	9.0000
ccc	chr20:33438855-33439106(-)$1	251	56	59	9.0000
E{B	chr1:156304304-156304581(-)$1	277	6	9	9.0000
:::	chr16:28844758-28845009(+)$1	251	14	17	9.0000
fff	chr1:93299146-93299422(+)$1	276	60	63	9.0000
dnn	chr1:22021346-22021632(-)$1	286	46	49	9.0000
HH:	chr2:70454679-70454938(-)$1	259	11	14	9.0000
[ff	chr2:85768798-85769048(+)$1	250	4	7	9.0000
ddm	chr3:3188236-3188507(+)$1	271	24	27	9.0000
%%%	chr9:135854159-135854418(+)$1	259	134	137	9.0000
[bb	chr9:136217110-136217347(+)$1	237	24	27	9.0000
G::	chr12:109050893-109051158(-)$1	265	26	29	9.0000
e[d	chr2:162242020-162242290(+)$1	270	37	40	9.0000
:::	chr9:134090670-134090936(+)$1	266	17	20	9.0000
[dd	chr7:44839005-44839293(+)$1	288	43	46	9.0000
cc!	chr1:245011915-245012159(-)$1	244	125	128	9.0000
BBK	chr17:57741276-57741532(+)$1	256	20	23	9.0000
fff	chr12:104336505-104336748(+)$1	243	43	46	9.0000
{FF	chr13:46732472-46732726(-)$1	254	30	33	9.0000
444	chr12:120106116-120106390(+)$1	274	87	90	9.0000
::e	chr6:53160302-53160511(-)$1	209	10	13	9.0000
ggg	chr22:20112891-20113134(+)$1	243	106	109	9.0000
ccc	chr8:67579853-67580143(+)$1	290	34	37	9.0000
EEE	chr1:39920699-39920953(+)$1	254	3	6	9.0000
dd!	chr3:5022025-5022289(+)$1	264	57	60	9.0000
fff	chr19:45981755-45981960(-)$1	205	28	31	9.0000
ee:	chr9:133489659-133489911(+)$1	252	100	103	9.0000
d55	chr8:128751188-128751473(+)$1	285	101	104	9.0000
DD:	chr5:167922356-167922638(+)$1	282	23	26	9.0000
ee]	chr16:85691171-85691436(+)$1	265	75	78	9.0000
ddd	chrX:154003474-154003770(+)$1	296	92	95	9.0000
eee	chr15:93536156-93536439(+)$1	283	23	26	9.0000
GAL	chr3:13393169-13393452(-)$1	283	12	15	9.0000
EEE	chr19:1021487-1021715(+)$1	228	158	161	9.0000
BBK	chr16:81685899-81686146(+)$1	247	26	29	9.0000
ccg	chr12:38557143-38557386(-)$1	243	82	85	9.0000
ccc	chr6:49583163-49583404(-)$1	241	46	49	9.0000
"""	chr1:173836917-173837157(-)$1	240	121	124	9.0000
FFK	chr9:123628946-123629218(-)$1	272	43	46	9.0000
ddd	chr19:11218114-11218384(+)$1	270	4	7	9.0000
JJJ	chr2:54119759-54120015(-)$1	256	39	42	9.0000
ddd	chr2:61621812-61622059(-)$1	247	122	125	9.0000
BB:	chr11:61732574-61732821(-)$1	247	4	7	9.0000
KEE	chr2:170429963-170430248(-)$1	285	14	17	9.0000
cpp	chr16:56969156-56969409(+)$1	253	37	40	9.0000
%%%	chr15:93444458-93444708(+)$1	250	81	84	9.0000
%%a	chr2:61753369-61753629(-)$1	260	56	59	9.0000
CC{	chr12:125398953-125399187(-)$1	234	48	51	9.0000
e44	chr12:112845844-112846115(-)$1	271	215	218	9.0000
:::	chr12:57039433-57039689(-)$1	256	0	3	9.0000
fff	chr18:216291-216555(-)$1	264	84	87	9.0000
:::	chr16:68358680-68358968(+)$1	288	7	10	9.0000
GGG	chr1:197091328-197091588(-)$1	260	13	16	9.0000
ccn	chr2:32439424-32439631(-)$1	207	4	7	9.0000
GGG	chr1:40035068-40035320(-)$1	252	189	192	9.0000
qqq	chr7:86820271-86820529(+)$1	258	18	21	9.0000
EFF	chr6:30690350-30690610(+)$1	260	95	98	9.0000
DD{	chr17:7476116-7476383(+)$1	267	41	44	9.0000
ddd	chr2:44128238-44128529(-)$1	291	24	27	9.0000
ccc	chr15:72559638-72559894(-)$1	256	114	117	9.0000
'''	chr16:58593933-58594191(-)$1	258	72	75	9.0000
:::	chr7:140086479-140086721(-)$1	242	3	6	9.0000
$$$	chr6:49585605-49585857(-)$1	252	12	15	9.0000
GG:	chr1:26799949-26800198(+)$1	249	74	77	9.0000
3gg	chr10:76982092-76982348(+)$1	256	40	43	9.0000
CC:	chr11:810335-810563(+)$1	228	14	17	9.0000
f::	chr16:2312082-2312351(-)$1	269	104	107	9.0000
ff[	chr6:49582202-49582470(-)$1	268	18	21	9.0000
CC{	chr12:125398987-125399199(-)$1	212	60	63	9.0000
:::	chr12:110883081-110883328(-)$1	247	9	12	9.0000
fff	chr17:62532789-62533051(+)$1	262	212	215	9.0000
###	chr11:118633724-118633991(-)$1	267	43	46	9.0000
hhh	chr1:40656450-40656705(+)$1	255	15	18	9.0000
eee	chr6:53160264-53160502(-)$1	238	1	4	9.0000
lff	chr6:43746583-43746877(+)$1	294	173	176	9.0000

#DB
...	chr8:103357441-103357696(-)$1	1	42	45	9.0000
(..	chr16:28847368-28847618(+)$1	1	29	32	9.0000
...	chr19:46178019-46178308(+)$1	1	129	132	9.0000
(((	chr2:69572859-69573108(-)$1	1	52	55	9.0000
)).	chr1:6711406-6711664(-)$1	1	45	48	9.0000
(((	chr6:18249701-18249952(-)$1	1	38	41	9.0000
(..	chr16:2820158-2820409(+)$1	1	111	114	9.0000
(((	chr3:186502416-186502656(+)$1	1	37	40	9.0000
...	chr19:893462-893666(+)$1	1	12	15	9.0000
)))	chr11:66367052-66367314(+)$1	1	22	25	9.0000
)))	chr16:81703793-81704005(+)$1	1	17	20	9.0000
((.	chr1:11083311-11083571(+)$1	1	29	32	9.0000
)))	chr7:12432999-12433290(-)$1	1	27	30	9.0000
.))	chr11:71719548-71719813(-)$1	1	67	70	9.0000
)..	chr12:46764368-46764621(-)$1	1	89	92	9.0000
(((	chr11:5290513-5290753(-)$1	1	65	68	9.0000
...	chr12:125270684-125270965(-)$1	1	40	43	9.0000
)))	chr1:182847238-182847511(+)$1	1	40	43	9.0000
.((	chr17:80039304-80039543(-)$1	1	114	117	9.0000
(.(	chr1:47779504-47779786(-)$1	1	59	62	9.0000
...	chr15:58357501-58357793(-)$1	1	0	3	9.0000
...	chr5:180664426-180664677(-)$1	1	4	7	9.0000
((.	chr6:133136158-133136405(+)$1	1	14	17	9.0000
)))	chr3:122101823-122102084(-)$1	1	79	82	9.0000
(..	chr1:226373851-226374161(-)$1	1	65	68	9.0000
)))	chr5:43298440-43298692(-)$1	1	34	37	9.0000
)))	chr20:33438855-33439106(-)$1	1	56	59	9.0000
(.(	chr1:156304304-156304581(-)$1	1	6	9	9.0000
...	chr16:28844758-28845009(+)$1	1	14	17	9.0000
)))	chr1:93299146-93299422(+)$1	1	60	63	9.0000
(..	chr1:22021346-22021632(-)$1	1	46	49	9.0000
((.	chr2:70454679-70454938(-)$1	1	11	14	9.0000
.((	chr2:85768798-85769048(+)$1	1	4	7	9.0000
((.	chr3:3188236-3188507(+)$1	1	24	27	9.0000
...	chr9:135854159-135854418(+)$1	1	134	137	9.0000
.((	chr9:136217110-136217347(+)$1	1	24	27	9.0000
(..	chr12:109050893-109051158(-)$1	1	26	29	9.0000
(.(	chr2:162242020-162242290(+)$1	1	37	40	9.0000
...	chr9:134090670-134090936(+)$1	1	17	20	9.0000
.((	chr7:44839005-44839293(+)$1	1	43	46	9.0000
((.	chr1:245011915-245012159(-)$1	1	125	128	9.0000
((.	chr17:57741276-57741532(+)$1	1	20	23	9.0000
)))	chr12:104336505-104336748(+)$1	1	43	46	9.0000
.((	chr13:46732472-46732726(-)$1	1	30	33	9.0000
...	chr12:120106116-120106390(+)$1	1	87	90	9.0000
..(	chr6:53160302-53160511(-)$1	1	10	13	9.0000
)))	chr22:20112891-20113134(+)$1	1	106	109	9.0000
)))	chr8:67579853-67580143(+)$1	1	34	37	9.0000
(((	chr1:39920699-39920953(+)$1	1	3	6	9.0000
((.	chr3:5022025-5022289(+)$1	1	57	60	9.0000
(((	chr19:45981755-45981960(-)$1	1	28	31	9.0000
)).	chr9:133489659-133489911(+)$1	1	100	103	9.0000
)..	chr8:128751188-128751473(+)$1	1	101	104	9.0000
((.	chr5:167922356-167922638(+)$1	1	23	26	9.0000
)).	chr16:85691171-85691436(+)$1	1	75	78	9.0000
)))	chrX:154003474-154003770(+)$1	1	92	95	9.0000
)))	chr15:93536156-93536439(+)$1	1	23	26	9.0000
((.	chr3:13393169-13393452(-)$1	1	12	15	9.0000
)))	chr19:1021487-1021715(+)$1	1	158	161	9.0000
((.	chr16:81685899-81686146(+)$1	1	26	29	9.0000
(((	chr12:38557143-38557386(-)$1	1	82	85	9.0000
(((	chr6:49583163-49583404(-)$1	1	46	49	9.0000
...	chr1:173836917-173837157(-)$1	1	121	124	9.0000
((.	chr9:123628946-123629218(-)$1	1	43	46	9.0000
(((	chr19:11218114-11218384(+)$1	1	4	7	9.0000
(((	chr2:54119759-54120015(-)$1	1	39	42	9.0000
(((	chr2:61621812-61622059(-)$1	1	122	125	9.0000
((.	chr11:61732574-61732821(-)$1	1	4	7	9.0000
.((	chr2:170429963-170430248(-)$1	1	14	17	9.0000
(..	chr16:56969156-56969409(+)$1	1	37	40	9.0000
...	chr15:93444458-93444708(+)$1	1	81	84	9.0000
..(	chr2:61753369-61753629(-)$1	1	56	59	9.0000
((.	chr12:125398953-125399187(-)$1	1	48	51	9.0000
)..	chr12:112845844-112846115(-)$1	1	215	218	9.0000
...	chr12:57039433-57039689(-)$1	1	0	3	9.0000
(((	chr18:216291-216555(-)$1	1	84	87	9.0000
...	chr16:68358680-68358968(+)$1	1	7	10	9.0000
(((	chr1:197091328-197091588(-)$1	1	13	16	9.0000
((.	chr2:32439424-32439631(-)$1	1	4	7	9.0000
)))	chr1:40035068-40035320(-)$1	1	189	192	9.0000
...	chr7:86820271-86820529(+)$1	1	18	21	9.0000
)))	chr6:30690350-30690610(+)$1	1	95	98	9.0000
((.	chr17:7476116-7476383(+)$1	1	41	44	9.0000
)))	chr2:44128238-44128529(-)$1	1	24	27	9.0000
)))	chr15:72559638-72559894(-)$1	1	114	117	9.0000
...	chr16:58593933-58594191(-)$1	1	72	75	9.0000
...	chr7:140086479-140086721(-)$1	1	3	6	9.0000
...	chr6:49585605-49585857(-)$1	1	12	15	9.0000
((.	chr1:26799949-26800198(+)$1	1	74	77	9.0000
.))	chr10:76982092-76982348(+)$1	1	40	43	9.0000
((.	chr11:810335-810563(+)$1	1	14	17	9.0000
)..	chr16:2312082-2312351(-)$1	1	104	107	9.0000
((.	chr6:49582202-49582470(-)$1	1	18	21	9.0000
((.	chr12:125398987-125399199(-)$1	1	60	63	9.0000
...	chr12:110883081-110883328(-)$1	1	9	12	9.0000
(((	chr17:62532789-62533051(+)$1	1	212	215	9.0000
...	chr11:118633724-118633991(-)$1	1	43	46	9.0000
(((	chr1:40656450-40656705(+)$1	1	15	18	9.0000
(((	chr6:53160264-53160502(-)$1	1	1	4	9.0000
.))	chr6:43746583-43746877(+)$1	1	173	176	9.0000

#PSSM
U : 0.96	u : 0.04	
C : 0.96	c : 0.04	
A : 0.96	a : 0.04	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF854NXI_HNRNPU_transcript_m2_run1.nuc.txt

#NT
GGGA	chr8:121687836-121688112(-)$1	276	86	90	11.9999
GGGA	chr11:2683461-2683711(-)$1	250	51	55	11.9999
ggga	chr20:47548982-47549255(+)$1	273	75	79	11.9999
GGGA	chr19:46368741-46369020(+)$1	279	85	89	11.9999
ggga	chr16:30013493-30013764(+)$1	271	2	6	11.9999
ggga	chrX:132923126-132923370(-)$1	244	112	116	11.9999
ggga	chr1:23750195-23750470(-)$1	275	49	53	11.9999
ggga	chr11:14520968-14521225(-)$1	257	25	29	11.9999
ggga	chrX:133072263-133072489(-)$1	226	153	157	11.9999
GGGA	chr2:102334986-102335250(+)$1	264	32	36	11.9999
GGGA	chr11:2712085-2712315(-)$1	230	169	173	11.9999
GGGA	chr11:2700406-2700632(-)$1	226	154	158	11.9999
GGGA	chr17:1465385-1465655(-)$1	270	140	144	11.9999
GGGA	chr12:125269217-125269495(-)$1	278	146	150	11.9999
ggga	chr3:49045978-49046226(+)$1	248	71	75	11.9999
ggga	chr20:36134504-36134759(-)$1	255	218	222	11.9999
ggga	chr20:47548629-47548873(+)$1	244	38	42	11.9999
GGGA	chr16:30014035-30014305(+)$1	270	95	99	11.9999
GGGA	chr19:39138491-39138814(+)$1	323	6	10	11.9999
ggga	chr8:128843752-128844056(+)$1	304	33	37	11.9999
GGGA	chr2:231906634-231906913(+)$1	279	4	8	11.9999
GGGA	chr2:134892071-134892329(+)$1	258	15	19	11.9999
GGGA	chr11:2712943-2713203(-)$1	260	41	45	11.9999
GGGA	chr10:77472109-77472368(+)$1	259	64	68	11.9999
ggga	chr22:31657761-31658088(+)$1	327	102	106	11.9999
ggga	chr2:11729616-11729850(+)$1	234	108	112	11.9999
GGGA	chr17:56456728-56456993(-)$1	265	211	215	11.9999
ggga	chrX:132712246-132712498(-)$1	252	32	36	11.9999
GGGA	chr17:70570919-70571178(-)$1	259	10	14	11.9999
ggga	chr21:47565488-47565737(-)$1	249	28	32	11.9999
GGGA	chrX:133056085-133056340(-)$1	255	22	26	11.9999
ggga	chr11:10529746-10529978(-)$1	232	192	196	11.9999
GGGA	chr17:70546559-70546828(-)$1	269	12	16	11.9999
GGGA	chr11:2713003-2713254(-)$1	251	28	32	11.9999
GGGA	chr11:2704183-2704436(-)$1	253	19	23	11.9999
ggga	chr20:47546427-47546689(+)$1	262	50	54	11.9999
ggga	chr2:191074272-191074586(-)$1	314	141	145	11.9999
GGGA	chr16:81598021-81598280(+)$1	259	95	99	11.9999
GGGA	chr19:35535263-35535541(+)$1	278	2	6	11.9999
GGGA	chr15:101998647-101998944(-)$1	297	21	25	11.9999
ggga	chr16:50646829-50647112(+)$1	283	0	4	11.9999
GGGA	chr2:102349664-102349918(+)$1	254	50	54	11.9999
GGGA	chr2:153255445-153255686(+)$1	241	56	60	11.9999
GGGA	chr11:2713171-2713433(-)$1	262	207	211	11.9999
GGGA	chr11:2700432-2700652(-)$1	220	174	178	11.9999
GGGA	chr19:8303169-8303499(+)$1	330	4	8	11.9999
GGGA	chr16:50650543-50650795(+)$1	252	114	118	11.9999
ggga	chr14:34908035-34908322(-)$1	287	2	6	11.9999
ggga	chr20:47547037-47547302(+)$1	265	13	17	11.9999
GGGA	chr17:55390870-55391147(+)$1	277	101	105	11.9999
GGGA	chr20:25528962-25529243(-)$1	281	23	27	11.9999
ggga	chr16:50602257-50602491(+)$1	234	100	104	11.9999
GGGA	chr17:76818945-76819236(-)$1	291	29	33	11.9999
GGGA	chr2:242209828-242210080(-)$1	252	52	56	11.9999
ggga	chr19:39140183-39140487(+)$1	304	1	5	11.9999
GGGA	chr17:36748179-36748438(-)$1	259	28	32	11.9999
GGGA	chr17:79915457-79915706(-)$1	249	17	21	11.9999
gggA	chr1:231981041-231981322(+)$1	281	90	94	11.9999
GGGA	chr11:2702629-2702868(-)$1	239	8	12	11.9999
GGGA	chr19:56146707-56146980(+)$1	273	4	8	11.9999
GGGA	chr17:45024424-45024710(+)$1	286	23	27	11.9999
ggga	chr16:50626613-50626874(+)$1	261	44	48	11.9999
GGGA	chrX:132910520-132910777(-)$1	257	0	4	11.9999
GGGA	chr11:2686345-2686609(-)$1	264	99	103	11.9999
GGGA	chr2:75781154-75781393(-)$1	239	111	115	11.9999
GGGA	chr6:2217245-2217584(-)$1	339	81	85	11.9999
GGGA	chr2:71345322-71345612(-)$1	290	55	59	11.9999
GGGA	chr5:95294733-95295007(-)$1	274	9	13	11.9999
GGGA	chr3:187874122-187874408(+)$1	286	28	32	11.9999
GGGA	chr16:50589010-50589251(+)$1	241	52	56	11.9999
GGGA	chr6:119643152-119643467(-)$1	315	178	182	11.9999
GGGA	chr16:50650686-50650937(+)$1	251	188	192	11.9999
GGGA	chr11:75192954-75193224(-)$1	270	50	54	11.9999
ggga	chr6:52414808-52415193(-)$1	385	26	30	11.9999
GGGA	chr2:129063589-129063838(-)$1	249	7	11	11.9999
GGGA	chr16:50631900-50632231(+)$1	331	23	27	11.9999
GGGA	chr22:22121532-22121821(-)$1	289	1	5	11.9999
ggga	chr20:32587066-32587335(+)$1	269	36	40	11.9999
GGGA	chr1:46767353-46767640(-)$1	287	21	25	11.9999
ggga	chr15:102015064-102015314(-)$1	250	23	27	11.9999
ggga	chr16:20711618-20711873(+)$1	255	121	125	11.9999
GGGA	chr2:102321648-102321957(+)$1	309	130	134	11.9999
GGGA	chr16:50652718-50652990(+)$1	272	42	46	11.9999
GGGA	chr11:120083644-120083917(+)$1	273	59	63	11.9999
GGGA	chr7:137646558-137646850(-)$1	292	60	64	11.9999
GGGA	chr11:2709380-2709602(-)$1	222	4	8	11.9999
GGGA	chr20:32657941-32658234(+)$1	293	129	133	11.9999

#otherMatches

#Struct PSSM
C{DD	chr2:101470179-101470442(+)$1	263	16	20	11.9999
c666	chr8:121687836-121688112(-)$1	276	86	90	11.9999
hhha	chr11:2683461-2683711(-)$1	250	51	55	11.9999
c[ee	chr20:47548982-47549255(+)$1	273	75	79	11.9999
ffff	chr19:46368741-46369020(+)$1	279	85	89	11.9999
HHHH	chr16:30013493-30013764(+)$1	271	2	6	11.9999
{BB{	chrX:132923126-132923370(-)$1	244	112	116	11.9999
::::	chr1:23750195-23750470(-)$1	275	49	53	11.9999
gggg	chr11:14520968-14521225(-)$1	257	25	29	11.9999
ffff	chrX:133072263-133072489(-)$1	226	153	157	11.9999
d[a#	chr2:102334986-102335250(+)$1	264	32	36	11.9999
EEEE	chr11:2712085-2712315(-)$1	230	169	173	11.9999
===d	chr11:2700406-2700632(-)$1	226	154	158	11.9999
aooo	chr17:1465385-1465655(-)$1	270	140	144	11.9999
FFF:	chr12:125269217-125269495(-)$1	278	146	150	11.9999
mmdd	chr3:49045978-49046226(+)$1	248	71	75	11.9999
ZAYY	chr20:36134504-36134759(-)$1	255	218	222	11.9999
GGGG	chr20:47548629-47548873(+)$1	244	38	42	11.9999
CCCK	chr16:30014035-30014305(+)$1	270	95	99	11.9999
FFFF	chr19:39138491-39138814(+)$1	323	6	10	11.9999
]ccc	chr8:128843752-128844056(+)$1	304	33	37	11.9999
ff$$	chr2:231906634-231906913(+)$1	279	4	8	11.9999
mmmm	chr2:134892071-134892329(+)$1	258	15	19	11.9999
ccnn	chr11:2712943-2713203(-)$1	260	41	45	11.9999
qccc	chr10:77472109-77472368(+)$1	259	64	68	11.9999
FFFF	chr22:31657761-31658088(+)$1	327	102	106	11.9999
ddd5	chr2:11729616-11729850(+)$1	234	108	112	11.9999
CCC}	chr17:56456728-56456993(-)$1	265	211	215	11.9999
::::	chrX:132712246-132712498(-)$1	252	32	36	11.9999
JJJJ	chr17:70570919-70571178(-)$1	259	10	14	11.9999
pppp	chr21:47565488-47565737(-)$1	249	28	32	11.9999
dddd	chrX:133056085-133056340(-)$1	255	22	26	11.9999
ffff	chr11:10529746-10529978(-)$1	232	192	196	11.9999
c!!c	chr17:70546559-70546828(-)$1	269	12	16	11.9999
oooo	chr11:2713003-2713254(-)$1	251	28	32	11.9999
eeec	chr11:2704183-2704436(-)$1	253	19	23	11.9999
::GG	chr20:47546427-47546689(+)$1	262	50	54	11.9999
bddd	chr2:191074272-191074586(-)$1	314	141	145	11.9999
ggg4	chr16:81598021-81598280(+)$1	259	95	99	11.9999
GGGG	chr19:35535263-35535541(+)$1	278	2	6	11.9999
bb]b	chr15:101998647-101998944(-)$1	297	21	25	11.9999
::::	chr16:50646829-50647112(+)$1	283	0	4	11.9999
KKA:	chr2:102349664-102349918(+)$1	254	50	54	11.9999
bb!!	chr2:153255445-153255686(+)$1	241	56	60	11.9999
oooo	chr11:2713171-2713433(-)$1	262	207	211	11.9999
===3	chr11:2700432-2700652(-)$1	220	174	178	11.9999
KBBM	chr19:8303169-8303499(+)$1	330	4	8	11.9999
GGGG	chr16:50650543-50650795(+)$1	252	114	118	11.9999
eeee	chr14:34908035-34908322(-)$1	287	2	6	11.9999
b"""	chr20:47547037-47547302(+)$1	265	13	17	11.9999
bb]a	chr17:55390870-55391147(+)$1	277	101	105	11.9999
cc[a	chr20:25528962-25529243(-)$1	281	23	27	11.9999
ffff	chr16:50602257-50602491(+)$1	234	100	104	11.9999
ffff	chr17:76818945-76819236(-)$1	291	29	33	11.9999
ddd]	chr2:242209828-242210080(-)$1	252	52	56	11.9999
DDD:	chr19:39140183-39140487(+)$1	304	1	5	11.9999
llld	chr17:36748179-36748438(-)$1	259	28	32	11.9999
pppp	chr17:79915457-79915706(-)$1	249	17	21	11.9999
dd44	chr1:231981041-231981322(+)$1	281	90	94	11.9999
C{DD	chr11:2702629-2702868(-)$1	239	8	12	11.9999
tttt	chr19:56146707-56146980(+)$1	273	4	8	11.9999
FKKB	chr17:45024424-45024710(+)$1	286	23	27	11.9999
ffnn	chr16:50626613-50626874(+)$1	261	44	48	11.9999
eeee	chrX:132910520-132910777(-)$1	257	0	4	11.9999
hhh[	chr11:2686345-2686609(-)$1	264	99	103	11.9999
ee22	chr2:75781154-75781393(-)$1	239	111	115	11.9999
ee''	chr6:2217245-2217584(-)$1	339	81	85	11.9999
]bb]	chr2:71345322-71345612(-)$1	290	55	59	11.9999
ff$$	chr5:95294733-95295007(-)$1	274	9	13	11.9999
DDD{	chr3:187874122-187874408(+)$1	286	28	32	11.9999
A:::	chr16:50589010-50589251(+)$1	241	52	56	11.9999
ddd"	chr6:119643152-119643467(-)$1	315	178	182	11.9999
ddd:	chr16:50650686-50650937(+)$1	251	188	192	11.9999
FFFF	chr11:75192954-75193224(-)$1	270	50	54	11.9999
CCCN	chr6:52414808-52415193(-)$1	385	26	30	11.9999
oooo	chr2:129063589-129063838(-)$1	249	7	11	11.9999
$ddd	chr16:50631900-50632231(+)$1	331	23	27	11.9999
BBCC	chr22:22121532-22121821(-)$1	289	1	5	11.9999
####	chr20:32587066-32587335(+)$1	269	36	40	11.9999
mmmm	chr1:46767353-46767640(-)$1	287	21	25	11.9999
GGGG	chr15:102015064-102015314(-)$1	250	23	27	11.9999
::::	chr16:20711618-20711873(+)$1	255	121	125	11.9999
====	chr2:102321648-102321957(+)$1	309	130	134	11.9999
9999	chr16:50652718-50652990(+)$1	272	42	46	11.9999
C{CC	chr11:120083644-120083917(+)$1	273	59	63	11.9999
qqqq	chr7:137646558-137646850(-)$1	292	60	64	11.9999
::::	chr11:2709380-2709602(-)$1	222	4	8	11.9999
eecc	chr20:32657941-32658234(+)$1	293	129	133	11.9999

#DB
(.((	chr2:101470179-101470442(+)$1	1	16	20	11.9999
)...	chr8:121687836-121688112(-)$1	1	86	90	11.9999
))))	chr11:2683461-2683711(-)$1	1	51	55	11.9999
(.((	chr20:47548982-47549255(+)$1	1	75	79	11.9999
((((	chr19:46368741-46369020(+)$1	1	85	89	11.9999
((((	chr16:30013493-30013764(+)$1	1	2	6	11.9999
.((.	chrX:132923126-132923370(-)$1	1	112	116	11.9999
....	chr1:23750195-23750470(-)$1	1	49	53	11.9999
))))	chr11:14520968-14521225(-)$1	1	25	29	11.9999
((((	chrX:133072263-133072489(-)$1	1	153	157	11.9999
(.(.	chr2:102334986-102335250(+)$1	1	32	36	11.9999
))))	chr11:2712085-2712315(-)$1	1	169	173	11.9999
)))(	chr11:2700406-2700632(-)$1	1	154	158	11.9999
(...	chr17:1465385-1465655(-)$1	1	140	144	11.9999
(((.	chr12:125269217-125269495(-)$1	1	146	150	11.9999
..))	chr3:49045978-49046226(+)$1	1	71	75	11.9999
.)..	chr20:36134504-36134759(-)$1	1	218	222	11.9999
((((	chr20:47548629-47548873(+)$1	1	38	42	11.9999
(((.	chr16:30014035-30014305(+)$1	1	95	99	11.9999
((((	chr19:39138491-39138814(+)$1	1	6	10	11.9999
.)))	chr8:128843752-128844056(+)$1	1	33	37	11.9999
((..	chr2:231906634-231906913(+)$1	1	4	8	11.9999
....	chr2:134892071-134892329(+)$1	1	15	19	11.9999
((..	chr11:2712943-2713203(-)$1	1	41	45	11.9999
.)))	chr10:77472109-77472368(+)$1	1	64	68	11.9999
((((	chr22:31657761-31658088(+)$1	1	102	106	11.9999
))).	chr2:11729616-11729850(+)$1	1	108	112	11.9999
))).	chr17:56456728-56456993(-)$1	1	211	215	11.9999
....	chrX:132712246-132712498(-)$1	1	32	36	11.9999
((((	chr17:70570919-70571178(-)$1	1	10	14	11.9999
....	chr21:47565488-47565737(-)$1	1	28	32	11.9999
((((	chrX:133056085-133056340(-)$1	1	22	26	11.9999
))))	chr11:10529746-10529978(-)$1	1	192	196	11.9999
(..(	chr17:70546559-70546828(-)$1	1	12	16	11.9999
....	chr11:2713003-2713254(-)$1	1	28	32	11.9999
((((	chr11:2704183-2704436(-)$1	1	19	23	11.9999
..((	chr20:47546427-47546689(+)$1	1	50	54	11.9999
))))	chr2:191074272-191074586(-)$1	1	141	145	11.9999
))).	chr16:81598021-81598280(+)$1	1	95	99	11.9999
((((	chr19:35535263-35535541(+)$1	1	2	6	11.9999
)).)	chr15:101998647-101998944(-)$1	1	21	25	11.9999
....	chr16:50646829-50647112(+)$1	1	0	4	11.9999
..(.	chr2:102349664-102349918(+)$1	1	50	54	11.9999
((..	chr2:153255445-153255686(+)$1	1	56	60	11.9999
....	chr11:2713171-2713433(-)$1	1	207	211	11.9999
))).	chr11:2700432-2700652(-)$1	1	174	178	11.9999
.((.	chr19:8303169-8303499(+)$1	1	4	8	11.9999
))))	chr16:50650543-50650795(+)$1	1	114	118	11.9999
((((	chr14:34908035-34908322(-)$1	1	2	6	11.9999
(...	chr20:47547037-47547302(+)$1	1	13	17	11.9999
)).)	chr17:55390870-55391147(+)$1	1	101	105	11.9999
((.(	chr20:25528962-25529243(-)$1	1	23	27	11.9999
((((	chr16:50602257-50602491(+)$1	1	100	104	11.9999
))))	chr17:76818945-76819236(-)$1	1	29	33	11.9999
))).	chr2:242209828-242210080(-)$1	1	52	56	11.9999
(((.	chr19:39140183-39140487(+)$1	1	1	5	11.9999
...)	chr17:36748179-36748438(-)$1	1	28	32	11.9999
....	chr17:79915457-79915706(-)$1	1	17	21	11.9999
))..	chr1:231981041-231981322(+)$1	1	90	94	11.9999
(.((	chr11:2702629-2702868(-)$1	1	8	12	11.9999
....	chr19:56146707-56146980(+)$1	1	4	8	11.9999
(..(	chr17:45024424-45024710(+)$1	1	23	27	11.9999
((..	chr16:50626613-50626874(+)$1	1	44	48	11.9999
((((	chrX:132910520-132910777(-)$1	1	0	4	11.9999
(((.	chr11:2686345-2686609(-)$1	1	99	103	11.9999
))..	chr2:75781154-75781393(-)$1	1	111	115	11.9999
((..	chr6:2217245-2217584(-)$1	1	81	85	11.9999
.)).	chr2:71345322-71345612(-)$1	1	55	59	11.9999
((..	chr5:95294733-95295007(-)$1	1	9	13	11.9999
(((.	chr3:187874122-187874408(+)$1	1	28	32	11.9999
(...	chr16:50589010-50589251(+)$1	1	52	56	11.9999
(((.	chr6:119643152-119643467(-)$1	1	178	182	11.9999
))).	chr16:50650686-50650937(+)$1	1	188	192	11.9999
((((	chr11:75192954-75193224(-)$1	1	50	54	11.9999
(((.	chr6:52414808-52415193(-)$1	1	26	30	11.9999
....	chr2:129063589-129063838(-)$1	1	7	11	11.9999
.(((	chr16:50631900-50632231(+)$1	1	23	27	11.9999
((((	chr22:22121532-22121821(-)$1	1	1	5	11.9999
....	chr20:32587066-32587335(+)$1	1	36	40	11.9999
....	chr1:46767353-46767640(-)$1	1	21	25	11.9999
((((	chr15:102015064-102015314(-)$1	1	23	27	11.9999
....	chr16:20711618-20711873(+)$1	1	121	125	11.9999
((((	chr2:102321648-102321957(+)$1	1	130	134	11.9999
....	chr16:50652718-50652990(+)$1	1	42	46	11.9999
(.((	chr11:120083644-120083917(+)$1	1	59	63	11.9999
....	chr7:137646558-137646850(-)$1	1	60	64	11.9999
....	chr11:2709380-2709602(-)$1	1	4	8	11.9999
((((	chr20:32657941-32658234(+)$1	1	129	133	11.9999

#PSSM
G : 0.68	g : 0.31	
G : 0.68	g : 0.31	
G : 0.68	g : 0.31	
A : 0.69	a : 0.30	

#score	1055.9999999999998
#seq	88
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_transcript_m2_run1.nuc.txt

#NT
ccggc	chr19:10406933-10407183(+)$1	250	144	149	14.9999
CCGGC	chr1:1509798-1510060(-)$1	262	2	7	14.9999
ccggc	chr14:105886166-105886469(+)$1	303	145	150	14.9999
ccggc	chr17:40428237-40428496(-)$1	259	70	75	14.9999
CCGGC	chr15:90645424-90645676(-)$1	252	58	63	14.9999
CCGGC	chr14:102430977-102431233(+)$1	256	195	200	14.9999
ccggc	chr20:29519339-29519606(-)$1	267	87	92	14.9999
ccggc	chr19:18392290-18392527(-)$1	237	209	214	14.9999
CCGGC	chr9:115095185-115095460(-)$1	275	149	154	14.9999
CCGGC	chr12:7037369-7037628(+)$1	259	234	239	14.9999
CCGGC	chr7:127729575-127729822(+)$1	247	50	55	14.9999
CCGGc	chr16:2563918-2564199(+)$1	281	115	120	14.9999
CCGGC	chr11:126138517-126138790(-)$1	273	56	61	14.9999
CCGGC	chr16:29818688-29818988(+)$1	300	67	72	14.9999
CCGGC	chr1:8938537-8938776(-)$1	239	65	70	14.9999
ccggc	chr19:18392069-18392307(-)$1	238	134	139	14.9999
CCGGC	chr21:46855490-46855827(+)$1	337	205	210	14.9999
CCGGC	chr5:137688296-137688636(+)$1	340	14	19	14.9999
ccggc	chr7:105028770-105029029(-)$1	259	27	32	14.9999
CCGGC	chr9:140006888-140007116(-)$1	228	8	13	14.9999
CCGGC	chr22:19711343-19711593(+)$1	250	86	91	14.9999
CCGGC	chr1:155658208-155658485(-)$1	277	61	66	14.9999
ccggc	chr10:33246738-33247039(-)$1	301	45	50	14.9999
ccggc	chr12:123873366-123873700(+)$1	334	242	247	14.9999
ccggc	chr16:84733890-84734182(+)$1	292	167	172	14.9999
CCGGC	chr19:3359617-3359920(+)$1	303	30	35	14.9999
CCGGC	chr8:102217716-102217963(-)$1	247	159	164	14.9999
CCGGC	chr19:1104617-1104868(+)$1	251	241	246	14.9999
CCGGC	chr7:117824226-117824530(+)$1	304	227	232	14.9999
CCGGC	chr4:1217310-1217575(-)$1	265	244	249	14.9999
ccggc	chr19:55918855-55919077(-)$1	222	55	60	14.9999
CCGGC	chr1:1509860-1510109(-)$1	249	51	56	14.9999
CCGGC	chr10:81107156-81107432(+)$1	276	248	253	14.9999
CCGGC	chr11:2004403-2004651(+)$1	248	92	97	14.9999
CCGGC	chr6:64282433-64282717(+)$1	284	144	149	14.9999
CCGGC	chr7:2394588-2394900(+)$1	312	23	28	14.9999
ccggc	chr16:447145-447414(+)$1	269	187	192	14.9999
CCGGC	chr16:16043361-16043650(+)$1	289	90	95	14.9999
CCGGC	chr11:8704241-8704463(+)$1	222	19	24	14.9999
CCGGC	chr18:811782-812031(-)$1	249	80	85	14.9999
CCGGC	chr8:144940503-144940774(-)$1	271	62	67	14.9999
CCGGC	chr17:76122108-76122364(-)$1	256	38	43	14.9999
CCGGC	chr2:240322464-240322757(-)$1	293	10	15	14.9999
CCGGC	chr2:114647594-114647919(+)$1	325	130	135	14.9999
CCGGC	chr12:120907128-120907356(-)$1	228	84	89	14.9999
ccggc	chr16:29817747-29817975(+)$1	228	14	19	14.9999
CCGGC	chr3:154041929-154042207(-)$1	278	154	159	14.9999
CCGGC	chr1:17764899-17765119(-)$1	220	199	204	14.9999
CCGGC	chr19:811070-811295(+)$1	225	186	191	14.9999
CCGGC	chr22:20849281-20849535(-)$1	254	142	147	14.9999
CCGGC	chr7:75156981-75157289(-)$1	308	253	258	14.9999
CCGGC	chr7:5570052-5570274(-)$1	222	126	131	14.9999
CCGGC	chr22:19711584-19711849(+)$1	265	95	100	14.9999
CCGGC	chr5:612494-612801(+)$1	307	274	279	14.9999
ccggc	chr17:77813009-77813291(-)$1	282	106	111	14.9999
ccggc	chr14:105261510-105261814(-)$1	304	167	172	14.9999
CCGGC	chr6:167369673-167369944(-)$1	271	76	81	14.9999
CCGGC	chr1:19811671-19811945(-)$1	274	39	44	14.9999
CCGGC	chr22:18121463-18121816(+)$1	353	26	31	14.9999
CCGGC	chr1:201951896-201952181(+)$1	285	52	57	14.9999
CCGGC	chr5:148737736-148738025(+)$1	289	22	27	14.9999
CCGGC	chr11:118272230-118272474(+)$1	244	34	39	14.9999

#otherMatches

#Struct PSSM
rrccc	chr6:33378692-33378967(+)$1	275	10	15	14.9999
ddccc	chr19:10406933-10407183(+)$1	250	144	149	14.9999
EEEEE	chr1:1509798-1510060(-)$1	262	2	7	14.9999
:dddd	chr14:105886166-105886469(+)$1	303	145	150	14.9999
eeeee	chr17:40428237-40428496(-)$1	259	70	75	14.9999
hhhhh	chr15:90645424-90645676(-)$1	252	58	63	14.9999
iiiii	chr14:102430977-102431233(+)$1	256	195	200	14.9999
!!ccc	chr20:29519339-29519606(-)$1	267	87	92	14.9999
dddll	chr19:18392290-18392527(-)$1	237	209	214	14.9999
eeeee	chr9:115095185-115095460(-)$1	275	149	154	14.9999
JJJJJ	chr12:7037369-7037628(+)$1	259	234	239	14.9999
eeeee	chr7:127729575-127729822(+)$1	247	50	55	14.9999
ceeee	chr16:2563918-2564199(+)$1	281	115	120	14.9999
occc]	chr11:126138517-126138790(-)$1	273	56	61	14.9999
eee22	chr16:29818688-29818988(+)$1	300	67	72	14.9999
cccee	chr1:8938537-8938776(-)$1	239	65	70	14.9999
ggg[c	chr19:18392069-18392307(-)$1	238	134	139	14.9999
ccc]a	chr21:46855490-46855827(+)$1	337	205	210	14.9999
LLCCC	chr5:137688296-137688636(+)$1	340	14	19	14.9999
hhhhh	chr7:105028770-105029029(-)$1	259	27	32	14.9999
BCCC{	chr9:140006888-140007116(-)$1	228	8	13	14.9999
!!ddd	chr22:19711343-19711593(+)$1	250	86	91	14.9999
ff!!d	chr1:155658208-155658485(-)$1	277	61	66	14.9999
ccc[b	chr10:33246738-33247039(-)$1	301	45	50	14.9999
b]bb]	chr12:123873366-123873700(+)$1	334	242	247	14.9999
dddd[	chr16:84733890-84734182(+)$1	292	167	172	14.9999
FFF{A	chr19:3359617-3359920(+)$1	303	30	35	14.9999
dddFF	chr8:102217716-102217963(-)$1	247	159	164	14.9999
eee]c	chr19:1104617-1104868(+)$1	251	241	246	14.9999
dddd]	chr7:117824226-117824530(+)$1	304	227	232	14.9999
33ccc	chr4:1217310-1217575(-)$1	265	244	249	14.9999
dd!!b	chr19:55918855-55919077(-)$1	222	55	60	14.9999
ee]bb	chr1:1509860-1510109(-)$1	249	51	56	14.9999
FFFFF	chr10:81107156-81107432(+)$1	276	248	253	14.9999
:cccn	chr11:2004403-2004651(+)$1	248	92	97	14.9999
]dddd	chr6:64282433-64282717(+)$1	284	144	149	14.9999
HHHHH	chr7:2394588-2394900(+)$1	312	23	28	14.9999
==[cc	chr16:447145-447414(+)$1	269	187	192	14.9999
!dddd	chr16:16043361-16043650(+)$1	289	90	95	14.9999
:eeee	chr11:8704241-8704463(+)$1	222	19	24	14.9999
bbggg	chr18:811782-812031(-)$1	249	80	85	14.9999
ccc""	chr8:144940503-144940774(-)$1	271	62	67	14.9999
:::FF	chr17:76122108-76122364(-)$1	256	38	43	14.9999
ECCCB	chr2:240322464-240322757(-)$1	293	10	15	14.9999
DDDEE	chr2:114647594-114647919(+)$1	325	130	135	14.9999
e:fff	chr12:120907128-120907356(-)$1	228	84	89	14.9999
JJJJJ	chr16:29817747-29817975(+)$1	228	14	19	14.9999
ddddm	chr3:154041929-154042207(-)$1	278	154	159	14.9999
hhhhh	chr1:17764899-17765119(-)$1	220	199	204	14.9999
nneee	chr19:811070-811295(+)$1	225	186	191	14.9999
d[fff	chr22:20849281-20849535(-)$1	254	142	147	14.9999
DA}EE	chr7:75156981-75157289(-)$1	308	253	258	14.9999
b]ccc	chr7:5570052-5570274(-)$1	222	126	131	14.9999
EEEEE	chr22:19711584-19711849(+)$1	265	95	100	14.9999
EEEE}	chr5:612494-612801(+)$1	307	274	279	14.9999
eeeee	chr17:77813009-77813291(-)$1	282	106	111	14.9999
ccooo	chr14:105261510-105261814(-)$1	304	167	172	14.9999
==bb[	chr6:167369673-167369944(-)$1	271	76	81	14.9999
:bbbb	chr1:19811671-19811945(-)$1	274	39	44	14.9999
:dddd	chr22:18121463-18121816(+)$1	353	26	31	14.9999
"iiii	chr1:201951896-201952181(+)$1	285	52	57	14.9999
ggttt	chr5:148737736-148738025(+)$1	289	22	27	14.9999
HHHHH	chr11:118272230-118272474(+)$1	244	34	39	14.9999

#DB
..)))	chr6:33378692-33378967(+)$1	1	10	15	14.9999
))(((	chr19:10406933-10407183(+)$1	1	144	149	14.9999
(((((	chr1:1509798-1510060(-)$1	1	2	7	14.9999
.((((	chr14:105886166-105886469(+)$1	1	145	150	14.9999
(((((	chr17:40428237-40428496(-)$1	1	70	75	14.9999
(((((	chr15:90645424-90645676(-)$1	1	58	63	14.9999
)))))	chr14:102430977-102431233(+)$1	1	195	200	14.9999
..(((	chr20:29519339-29519606(-)$1	1	87	92	14.9999
(((..	chr19:18392290-18392527(-)$1	1	209	214	14.9999
)))))	chr9:115095185-115095460(-)$1	1	149	154	14.9999
)))))	chr12:7037369-7037628(+)$1	1	234	239	14.9999
(((((	chr7:127729575-127729822(+)$1	1	50	55	14.9999
)))))	chr16:2563918-2564199(+)$1	1	115	120	14.9999
.))).	chr11:126138517-126138790(-)$1	1	56	61	14.9999
)))..	chr16:29818688-29818988(+)$1	1	67	72	14.9999
)))))	chr1:8938537-8938776(-)$1	1	65	70	14.9999
(((.(	chr19:18392069-18392307(-)$1	1	134	139	14.9999
))).)	chr21:46855490-46855827(+)$1	1	205	210	14.9999
..(((	chr5:137688296-137688636(+)$1	1	14	19	14.9999
(((((	chr7:105028770-105029029(-)$1	1	27	32	14.9999
((((.	chr9:140006888-140007116(-)$1	1	8	13	14.9999
..(((	chr22:19711343-19711593(+)$1	1	86	91	14.9999
((..(	chr1:155658208-155658485(-)$1	1	61	66	14.9999
(((.(	chr10:33246738-33247039(-)$1	1	45	50	14.9999
).)).	chr12:123873366-123873700(+)$1	1	242	247	14.9999
((((.	chr16:84733890-84734182(+)$1	1	167	172	14.9999
(((.(	chr19:3359617-3359920(+)$1	1	30	35	14.9999
)))))	chr8:102217716-102217963(-)$1	1	159	164	14.9999
))).)	chr19:1104617-1104868(+)$1	1	241	246	14.9999
)))).	chr7:117824226-117824530(+)$1	1	227	232	14.9999
..)))	chr4:1217310-1217575(-)$1	1	244	249	14.9999
((..(	chr19:55918855-55919077(-)$1	1	55	60	14.9999
)).))	chr1:1509860-1510109(-)$1	1	51	56	14.9999
)))))	chr10:81107156-81107432(+)$1	1	248	253	14.9999
.(((.	chr11:2004403-2004651(+)$1	1	92	97	14.9999
.))))	chr6:64282433-64282717(+)$1	1	144	149	14.9999
(((((	chr7:2394588-2394900(+)$1	1	23	28	14.9999
((.((	chr16:447145-447414(+)$1	1	187	192	14.9999
.((((	chr16:16043361-16043650(+)$1	1	90	95	14.9999
.((((	chr11:8704241-8704463(+)$1	1	19	24	14.9999
))(((	chr18:811782-812031(-)$1	1	80	85	14.9999
(((..	chr8:144940503-144940774(-)$1	1	62	67	14.9999
...((	chr17:76122108-76122364(-)$1	1	38	43	14.9999
(((((	chr2:240322464-240322757(-)$1	1	10	15	14.9999
(((((	chr2:114647594-114647919(+)$1	1	130	135	14.9999
).(((	chr12:120907128-120907356(-)$1	1	84	89	14.9999
(((((	chr16:29817747-29817975(+)$1	1	14	19	14.9999
((((.	chr3:154041929-154042207(-)$1	1	154	159	14.9999
)))))	chr1:17764899-17765119(-)$1	1	199	204	14.9999
..)))	chr19:811070-811295(+)$1	1	186	191	14.9999
(.(((	chr22:20849281-20849535(-)$1	1	142	147	14.9999
)).))	chr7:75156981-75157289(-)$1	1	253	258	14.9999
).)))	chr7:5570052-5570274(-)$1	1	126	131	14.9999
)))))	chr22:19711584-19711849(+)$1	1	95	100	14.9999
)))).	chr5:612494-612801(+)$1	1	274	279	14.9999
)))))	chr17:77813009-77813291(-)$1	1	106	111	14.9999
((...	chr14:105261510-105261814(-)$1	1	167	172	14.9999
((((.	chr6:167369673-167369944(-)$1	1	76	81	14.9999
.((((	chr1:19811671-19811945(-)$1	1	39	44	14.9999
.((((	chr22:18121463-18121816(+)$1	1	26	31	14.9999
.((((	chr1:201951896-201952181(+)$1	1	52	57	14.9999
((...	chr5:148737736-148738025(+)$1	1	22	27	14.9999
(((((	chr11:118272230-118272474(+)$1	1	34	39	14.9999

#PSSM
C : 0.74	c : 0.25	
C : 0.74	c : 0.25	
G : 0.74	g : 0.25	
G : 0.74	g : 0.25	
C : 0.73	c : 0.26	

#score	944.9999999999999
#seq	63
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_UTR_m3_run1.nuc.txt

#NT
GUUUUGUU	chr14:103377574-103377853(+)$1	279	86	94	15.9999
CUUUUGUU	chr2:206858414-206858665(-)$1	251	25	33	15.9999
UUUUUGUU	chr14:39501335-39501637(-)$1	302	86	94	20.0769
UUUUUGUU	chr7:6501368-6501612(-)$1	244	8	16	20.0769
UUUUUAUU	chr21:38574374-38574649(+)$1	275	106	114	16.9230
UUUUUGCU	chr14:21927087-21927329(-)$1	242	97	105	15.9230
UUUUUCUU	chr12:74934755-74934995(+)$1	240	225	233	16.6153
AUUUUGUU	chr5:130730155-130730416(+)$1	261	29	37	16.3076
UUUuuguu	chr7:92243387-92243626(-)$1	239	97	105	20.0769
UUUUUGGU	chr17:53399232-53399579(+)$1	347	91	99	15.9999
UUUUUGUA	chr15:99507478-99507771(+)$1	293	94	102	15.7692
UUUUUGUU	chr6:150139968-150140330(-)$1	362	73	81	20.0769
UUUUUAUU	chr9:33112326-33112589(-)$1	263	0	8	16.9230
GUUUUGUU	chr11:33762458-33762784(-)$1	326	117	125	15.9999
UUUUUGCU	chr20:61431623-61431914(+)$1	291	124	132	15.9230
UUUAUGUU	chr17:49254860-49255112(-)$1	252	188	196	15.3846
UUUUUGUU	chr2:177202455-177202735(+)$1	280	154	162	20.0769
UUGUUGUU	chr7:151163723-151163974(-)$1	251	49	57	15.3076
UCUUUGUU	chr1:235330434-235330674(-)$1	240	127	135	15.6153
UUUUUUUU	chr1:111489946-111490231(-)$1	285	134	142	16.6153
UUUUUGUA	chr13:25915969-25916294(+)$1	325	101	109	15.7692
UUUUUGUU	chr2:62451595-62451841(+)$1	246	188	196	20.0769
AUUUUGUU	chr5:167975547-167975775(-)$1	228	194	202	16.3076
UUUUUCUU	chr12:74934851-74935130(+)$1	279	129	137	16.6153
CUUUUGUU	chr1:92146436-92146719(-)$1	283	71	79	15.9999
UCUUUGUU	chr4:83345726-83345993(-)$1	267	97	105	15.6153
UUUUUGUU	chr13:24881044-24881299(+)$1	255	50	58	20.0769
UUUUUCUU	chr12:116397342-116397606(-)$1	264	3	11	16.6153
UUUUUGUU	chr19:16663396-16663662(-)$1	266	184	192	20.0769
UUUUUUUU	chr2:87004386-87004690(+)$1	304	79	87	16.6153
UUUUUAUU	chr6:24537259-24537505(+)$1	246	225	233	16.9230
uuuuuuuu	chr18:8639176-8639431(+)$1	255	0	8	16.6153
AUUUUGUU	chr5:171289963-171290211(-)$1	248	25	33	16.3076
AUUUUGUU	chr5:171290011-171290286(-)$1	275	100	108	16.3076
UUUUUAUU	chr7:137563666-137563942(-)$1	276	99	107	16.9230
UUUUUCUU	chr2:160624035-160624304(+)$1	269	58	66	16.6153
UUUUUGUG	chr9:21332594-21332854(-)$1	260	81	89	15.6923
UUUUUGAU	chr8:42274514-42274841(-)$1	327	187	195	16.0769
UUUUUGUU	chr12:93802950-93803239(-)$1	289	93	101	20.0769
UUUUUGAU	chr7:139246300-139246568(-)$1	268	113	121	16.0769
UUUUUGUU	chr6:11576240-11576542(+)$1	302	15	23	20.0769
UAUUUGUU	chr15:69561978-69562301(+)$1	323	136	144	15.6153
uuuuuGUA	chr12:46299741-46300012(+)$1	271	0	8	15.7692
UUUGUGUU	chr14:64150859-64151181(-)$1	322	169	177	15.4615
UUUUUGUU	chr12:65641390-65641636(+)$1	246	90	98	20.0769
UUUUUAUU	chr9:74970670-74970927(-)$1	257	89	97	16.9230
UGUUUGUU	chr8:98863728-98863977(+)$1	249	71	79	15.5384
UUAUUGUU	chrX:150575428-150575719(+)$1	291	184	192	15.3076
UUUUUUUU	chr2:227600314-227600605(-)$1	291	145	153	16.6153
UUUUUGAU	chr14:53194298-53194553(+)$1	255	49	57	16.0769
UUUGUGUU	chr18:56995916-56996263(-)$1	347	187	195	15.4615
UUUUUGUU	chr1:36322889-36323226(+)$1	337	145	153	20.0769
UAUUUGUU	chr11:27518333-27518598(-)$1	265	113	121	15.6153
UUUUUGUU	chr6:31785390-31785714(+)$1	324	89	97	20.0769
UUUUUGUG	chr2:86830640-86830925(-)$1	285	29	37	15.6923
AUUUUGUU	chr2:42558608-42558825(+)$1	217	52	60	16.3076
UUUUUGAU	chr4:166419251-166419536(+)$1	285	20	28	16.0769
UUUUUGUC	chr2:70107144-70107426(+)$1	282	41	49	15.6153
UUUUUAUU	chr5:179203963-179204236(+)$1	273	178	186	16.9230
UUUUUGGU	chr1:31404831-31405081(-)$1	250	43	51	15.9999
UUUUUGUU	chr12:49666923-49667212(+)$1	289	132	140	20.0769
UUUUUAUU	chr15:102182343-102182604(-)$1	261	96	104	16.9230
AUUUUGUU	chr13:113918755-113919026(+)$1	271	90	98	16.3076
UUUUUAUU	chr15:102182057-102182330(-)$1	273	31	39	16.9230

#otherMatches

#Struct PSSM
hhhhhhh[	chr14:39501691-39501936(-)$1	245	62	70	15.9999
dd22bb]e	chr14:103377574-103377853(+)$1	279	86	94	15.9999
bttttttt	chr2:206858414-206858665(-)$1	251	25	33	15.9999
^^^^^^^^	chr14:39501335-39501637(-)$1	302	86	94	20.0769
HHHHHHH:	chr7:6501368-6501612(-)$1	244	8	16	20.0769
qqqqqqqq	chr21:38574374-38574649(+)$1	275	106	114	16.9230
dd333eee	chr14:21927087-21927329(-)$1	242	97	105	15.9230
}IIIIIII	chr12:74934755-74934995(+)$1	240	225	233	16.6153
DDD:dddd	chr5:130730155-130730416(+)$1	261	29	37	16.3076
hhhhh>>>	chr7:92243387-92243626(-)$1	239	97	105	20.0769
GGG{CCCL	chr17:53399232-53399579(+)$1	347	91	99	15.9999
fffff$$$	chr15:99507478-99507771(+)$1	293	94	102	15.7692
iiiiiiii	chr6:150139968-150140330(-)$1	362	73	81	20.0769
::::::::	chr9:33112326-33112589(-)$1	263	0	8	16.9230
bb22eeee	chr11:33762458-33762784(-)$1	326	117	125	15.9999
000000ee	chr20:61431623-61431914(+)$1	291	124	132	15.9230
hhhhhhhh	chr17:49254860-49255112(-)$1	252	188	196	15.3846
emmmmeee	chr2:177202455-177202735(+)$1	280	154	162	20.0769
e[bb[bb#	chr7:151163723-151163974(-)$1	251	49	57	15.3076
%%%%%bb[	chr1:235330434-235330674(-)$1	240	127	135	15.6153
eee####f	chr1:111489946-111490231(-)$1	285	134	142	16.6153
JJJJJ{BB	chr13:25915969-25916294(+)$1	325	101	109	15.7692
:::=====	chr2:62451595-62451841(+)$1	246	188	196	20.0769
ggffffff	chr5:167975547-167975775(-)$1	228	194	202	16.3076
77hhhhhh	chr12:74934851-74935130(+)$1	279	129	137	16.6153
vvvvvvvv	chr1:92146436-92146719(-)$1	283	71	79	15.9999
::::::::	chr4:83345726-83345993(-)$1	267	97	105	15.6153
fffeeeee	chr13:24881044-24881299(+)$1	255	50	58	20.0769
:::::EEE	chr12:116397342-116397606(-)$1	264	3	11	16.6153
:hhhhhhh	chr19:16663396-16663662(-)$1	266	184	192	20.0769
ddoooooo	chr2:87004386-87004690(+)$1	304	79	87	16.6153
mmmccc22	chr6:24537259-24537505(+)$1	246	225	233	16.9230
::::::::	chr18:8639176-8639431(+)$1	255	0	8	16.6153
boooooob	chr5:171289963-171290211(-)$1	248	25	33	16.3076
bb]dddd4	chr5:171290011-171290286(-)$1	275	100	108	16.3076
iiiiiiii	chr7:137563666-137563942(-)$1	276	99	107	16.9230
RRRRRRRR	chr2:160624035-160624304(+)$1	269	58	66	16.6153
=====444	chr9:21332594-21332854(-)$1	260	81	89	15.6923
hhhhhh[e	chr8:42274514-42274841(-)$1	327	187	195	16.0769
###dddd^	chr12:93802950-93803239(-)$1	289	93	101	20.0769
:::::::g	chr7:139246300-139246568(-)$1	268	113	121	16.0769
:::::DDD	chr6:11576240-11576542(+)$1	302	15	23	20.0769
tttttttt	chr15:69561978-69562301(+)$1	323	136	144	15.6153
:::::III	chr12:46299741-46300012(+)$1	271	0	8	15.7692
EEEEKKGG	chr14:64150859-64151181(-)$1	322	169	177	15.4615
iiiiiiii	chr12:65641390-65641636(+)$1	246	90	98	20.0769
RRRRRGGG	chr9:74970670-74970927(-)$1	257	89	97	16.9230
!bb####b	chr8:98863728-98863977(+)$1	249	71	79	15.5384
fffff!!f	chrX:150575428-150575719(+)$1	291	184	192	15.3076
gppppppp	chr2:227600314-227600605(-)$1	291	145	153	16.6153
gggggg!!	chr14:53194298-53194553(+)$1	255	49	57	16.0769
KKBB:ddd	chr18:56995916-56996263(-)$1	347	187	195	15.4615
qqqqqqqq	chr1:36322889-36323226(+)$1	337	145	153	20.0769
fffff]ee	chr11:27518333-27518598(-)$1	265	113	121	15.6153
ssssshhh	chr6:31785390-31785714(+)$1	324	89	97	20.0769
nnnfffff	chr2:86830640-86830925(-)$1	285	29	37	15.6923
gg:::ggg	chr2:42558608-42558825(+)$1	217	52	60	16.3076
ddlllddd	chr4:166419251-166419536(+)$1	285	20	28	16.0769
iiiiilll	chr2:70107144-70107426(+)$1	282	41	49	15.6153
gggg[bbm	chr5:179203963-179204236(+)$1	273	178	186	16.9230
hhhhhhhh	chr1:31404831-31405081(-)$1	250	43	51	15.9999
ddhhhhhh	chr12:49666923-49667212(+)$1	289	132	140	20.0769
::GGGGGG	chr15:102182343-102182604(-)$1	261	96	104	16.9230
ggggg[bb	chr13:113918755-113919026(+)$1	271	90	98	16.3076
a!!a[ccc	chr15:102182057-102182330(-)$1	273	31	39	16.9230

#DB
(((((((.	chr14:39501691-39501936(-)$1	1	62	70	15.9999
))..)).)	chr14:103377574-103377853(+)$1	1	86	94	15.9999
(.......	chr2:206858414-206858665(-)$1	1	25	33	15.9999
........	chr14:39501335-39501637(-)$1	1	86	94	20.0769
(((((((.	chr7:6501368-6501612(-)$1	1	8	16	20.0769
........	chr21:38574374-38574649(+)$1	1	106	114	16.9230
))...)))	chr14:21927087-21927329(-)$1	1	97	105	15.9230
.)))))))	chr12:74934755-74934995(+)$1	1	225	233	16.6153
(((.((((	chr5:130730155-130730416(+)$1	1	29	37	16.3076
)))))...	chr7:92243387-92243626(-)$1	1	97	105	20.0769
(((.(((.	chr17:53399232-53399579(+)$1	1	91	99	15.9999
(((((...	chr15:99507478-99507771(+)$1	1	94	102	15.7692
))))))))	chr6:150139968-150140330(-)$1	1	73	81	20.0769
........	chr9:33112326-33112589(-)$1	1	0	8	16.9230
))..))))	chr11:33762458-33762784(-)$1	1	117	125	15.9999
......))	chr20:61431623-61431914(+)$1	1	124	132	15.9230
))))))))	chr17:49254860-49255112(-)$1	1	188	196	15.3846
(....)))	chr2:177202455-177202735(+)$1	1	154	162	20.0769
(.((.((.	chr7:151163723-151163974(-)$1	1	49	57	15.3076
.....((.	chr1:235330434-235330674(-)$1	1	127	135	15.6153
(((....(	chr1:111489946-111490231(-)$1	1	134	142	16.6153
(((((.((	chr13:25915969-25916294(+)$1	1	101	109	15.7692
...(((((	chr2:62451595-62451841(+)$1	1	188	196	20.0769
((((((((	chr5:167975547-167975775(-)$1	1	194	202	16.3076
..))))))	chr12:74934851-74935130(+)$1	1	129	137	16.6153
........	chr1:92146436-92146719(-)$1	1	71	79	15.9999
........	chr4:83345726-83345993(-)$1	1	97	105	15.6153
((((((((	chr13:24881044-24881299(+)$1	1	50	58	20.0769
.....(((	chr12:116397342-116397606(-)$1	1	3	11	16.6153
.(((((((	chr19:16663396-16663662(-)$1	1	184	192	20.0769
((......	chr2:87004386-87004690(+)$1	1	79	87	16.6153
...)))..	chr6:24537259-24537505(+)$1	1	225	233	16.9230
........	chr18:8639176-8639431(+)$1	1	0	8	16.6153
(......)	chr5:171289963-171290211(-)$1	1	25	33	16.3076
)).)))).	chr5:171290011-171290286(-)$1	1	100	108	16.3076
))))))))	chr7:137563666-137563942(-)$1	1	99	107	16.9230
........	chr2:160624035-160624304(+)$1	1	58	66	16.6153
)))))...	chr9:21332594-21332854(-)$1	1	81	89	15.6923
((((((.(	chr8:42274514-42274841(-)$1	1	187	195	16.0769
...((((.	chr12:93802950-93803239(-)$1	1	93	101	20.0769
.......(	chr7:139246300-139246568(-)$1	1	113	121	16.0769
.....(((	chr6:11576240-11576542(+)$1	1	15	23	20.0769
........	chr15:69561978-69562301(+)$1	1	136	144	15.6153
.....(((	chr12:46299741-46300012(+)$1	1	0	8	15.7692
((((..((	chr14:64150859-64151181(-)$1	1	169	177	15.4615
((((((((	chr12:65641390-65641636(+)$1	1	90	98	20.0769
.....(((	chr9:74970670-74970927(-)$1	1	89	97	16.9230
.((....(	chr8:98863728-98863977(+)$1	1	71	79	15.5384
(((((..(	chrX:150575428-150575719(+)$1	1	184	192	15.3076
(.......	chr2:227600314-227600605(-)$1	1	145	153	16.6153
((((((..	chr14:53194298-53194553(+)$1	1	49	57	16.0769
..((.(((	chr18:56995916-56996263(-)$1	1	187	195	15.4615
........	chr1:36322889-36323226(+)$1	1	145	153	20.0769
))))).))	chr11:27518333-27518598(-)$1	1	113	121	15.6153
.....)))	chr6:31785390-31785714(+)$1	1	89	97	20.0769
...)))))	chr2:86830640-86830925(-)$1	1	29	37	15.6923
))...(((	chr2:42558608-42558825(+)$1	1	52	60	16.3076
((...)))	chr4:166419251-166419536(+)$1	1	20	28	16.0769
(((((...	chr2:70107144-70107426(+)$1	1	41	49	15.6153
((((.((.	chr5:179203963-179204236(+)$1	1	178	186	16.9230
((((((((	chr1:31404831-31405081(-)$1	1	43	51	15.9999
))))))))	chr12:49666923-49667212(+)$1	1	132	140	20.0769
..((((((	chr15:102182343-102182604(-)$1	1	96	104	16.9230
(((((.((	chr13:113918755-113919026(+)$1	1	90	98	16.3076
(..(.(((	chr15:102182057-102182330(-)$1	1	31	39	16.9230

#PSSM
U : 0.81	A : 0.09	G : 0.03	C : 0.03	u : 0.03	
U : 0.89	C : 0.03	u : 0.03	A : 0.03	G : 0.01	
U : 0.93	u : 0.03	G : 0.01	A : 0.01	
U : 0.90	u : 0.04	G : 0.03	A : 0.01	
U : 0.95	u : 0.04	
G : 0.73	A : 0.12	C : 0.06	U : 0.04	g : 0.01	u : 0.01	
U : 0.83	A : 0.06	G : 0.04	C : 0.03	u : 0.03	
U : 0.87	A : 0.04	u : 0.03	G : 0.03	C : 0.01	

#score	1104.6153846153836
#seq	65
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_transcript_m2_run2.nuc.txt

#NT
AGUAAUUUAAUAUAAAUAAUCUACUUGGUACUUCUUGGUUUUAUGUUAAAUUGACUAAUCAUUUGGUAUGAAAUCCUUUUGUGCAGCAUGUUUGUGAGUCUGAAGACAGGGAAGAAGUGGUGGUGUGUGAACUGUGUGAAUGCAGCGUCGUCAGCUUCAAUCAGCACAUGAAGAGAAACCAUCCAGGCUGUGGGCGCAGUGCAAACCGCCAGGGCUAUCGCAGCAAUGGUUCCUAUGUGGAUGGCUGGUUUGGCGGUGAAUGUGGGAGUGGAAAUCCGUACUACCUGUUAU	chr15:63954006-63954322(-)$1	316	16	307	390.5000

#otherMatches

#Struct PSSM
:::::::HHHHHHHH:::::ccc!!hhhhhhhhsssssssssshhhhhhhh22ccccccooooooccc::::cccooooooccc:HHHHHHHH:GGGGGGG:::::::::::::ffffff####bb[cccmmmmcccbb4444ffffff::::eeeee!!dddd[bb[ccc[ddddbb[cccbbccc!!eeeee(((((((((ffffffqqqqqqqqffffff333eeeee]ccc22bb4444cccbb4444ddddccc]bbdddd333eeeee:GGGGGGG:::::::::	chr5:33459699-33459993(+)$1	294	2	293	390.5000
eeee!!cccpppppppccc22eeeee:dddd$$$$$===============[bbmmmmbb===============55555dddd:dddd"""ddddffffff++++++++++++++++ffffff''''''''ddddccc[bb[cccpppppppccc]bb]ccc]dddd999999999ffffffffffff55555dddddddd::hhhhhhhhggggggg[bb[bb[ccclllcccbbbbggggggg333hhhhhhhh::::dddd"""cccmmmmccc22dddd:IIIIII	chr15:63954006-63954322(-)$1	316	16	307	390.5000

#DB
.......((((((((.....(((..((((((((..........))))))))..)))(((......)))....(((......))).)))))))).(((((((.............((((((....((.(((....)))))....))))))....(((((..((((.((.(((.((((((.((((((((..(((((.........((((((........))))))...))))).)))..))....)))))....))))))).))))))...))))).))))))).........	chr5:33459699-33459993(+)$1	1	2	293	390.5000
((((..(((.......)))..))))).((((.....(((((((((((((((.((....))))))))))))))))).....)))).((((...((((((((((................((((((........(((((((.((.(((.......))).)).))).)))).........)))))))))))).....))))))))..(((((((((((((((.((.((.(((...))))))))))))))...))))))))....((((...(((....)))..)))).))))))	chr15:63954006-63954322(-)$1	1	16	307	390.5000

#PSSM
u : 0.50	A : 0.50	
u : 0.50	G : 0.50	
u : 0.50	U : 0.50	
c : 0.50	A : 0.50	
a : 0.50	A : 0.50	
u : 0.50	U : 0.50	
g : 0.50	U : 0.50	
a : 0.50	U : 0.50	
g : 0.50	A : 0.50	
a : 0.50	A : 0.50	
g : 0.50	U : 0.50	
a : 0.50	A : 0.50	
g : 0.50	U : 0.50	
u : 0.50	A : 0.50	
a : 0.50	A : 0.50	
u : 0.50	A : 0.50	
a : 0.50	U : 0.50	
a : 0.50	A : 0.50	
a : 0.50	A : 0.50	
a : 0.50	U : 0.50	
u : 0.50	C : 0.50	
c : 0.50	U : 0.50	
a : 0.50	A : 0.50	
c : 0.50	C : 0.50	
u : 0.50	U : 0.50	
c : 0.50	U : 0.50	
u : 0.50	G : 0.50	
u : 0.50	G : 0.50	
u : 0.50	U : 0.50	
a : 0.50	A : 0.50	
a : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 1.00	

#score	781.0
#seq	2
#width	291
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_CDS_m3_run1.nuc.txt

#NT
ggagggcggggagggggaagggcgcuguuggg	chr21:47565651-47565894(-)$1	243	205	237	20.4594
GGAGGGCAGCCACGGGGAGGGCGGGCACGGGG	chr8:144672182-144672445(-)$1	263	84	116	24.6486
GGGCCccgggcccggggcgggccggccggagc	chr2:42275452-42275696(+)$1	244	105	137	24.1081
GAGCGGCGGGCGUGCGUCGUGCCCGCCGGGGG	chr19:2015468-2015751(-)$1	283	63	95	15.4594
ggggcggggcucgguggcggggacaccggggc	chr2:242447735-242448008(-)$1	273	212	244	21.6756
GGGUCCGGCACCGGGGGCGGCCCGGGCUUGGG	chr7:99755794-99756072(-)$1	278	118	150	16.4054
gaggcgcagggcgcgggcgccuacgguuggcg	chr15:78369834-78370042(-)$1	208	6	38	19.2432
GGGGCCCAGCGCGGGGUCCGGGGGAGGCGGCU	chr17:30264209-30264498(+)$1	289	97	129	17.7567
GGUGGCCAGGUCCGGGACCGGCGGGCAGGGGG	chr19:45801024-45801274(+)$1	250	21	53	23.2972
GGGGAGUGGGUGGAGGGGGAGGAUGGGCUGCG	chr9:130160098-130160349(+)$1	251	15	47	14.6486
CCGGUCUGGGCCGGGGUCCGGGCGGCCUGGGG	chr3:98451681-98451921(+)$1	240	201	233	21.0000
AGGGGCUGUUGGGGGGGCUGGCAGGCAGUGGG	chr17:36878231-36878475(+)$1	244	101	133	17.2162
GGGGUGCCGGGCGACUGCGGCGCGGCCACGGC	chr1:27320725-27320996(+)$1	271	141	173	18.4324
gaggaggccggcgggggcggcccggccgcggg	chr8:145687815-145688067(-)$1	252	42	74	25.1891
CGGCUGUGGGGCGGAUGCGGGCAGAGAGGCGG	chr22:39134582-39134837(+)$1	255	86	118	14.2432
gggagggcgcgccgggcggggggcgcACGGGC	chr6:37138568-37138883(+)$1	315	108	140	16.6756
gggggccggccggcgagcggggcgcaggcggg	chr11:65325150-65325431(-)$1	281	128	160	17.7567
GCCGGGCCGGGGGCGGGAGUGAAGGGACCGGG	chr9:74979420-74979699(-)$1	279	130	162	16.8108
AGGGCGGUGGGGAGGAGGAGGGAGCCGCGGGG	chr7:77166705-77166977(+)$1	272	4	36	17.0810
ggggagcaggucgggggcgggcaggcACGGGG	chr22:50722318-50722570(-)$1	252	91	123	37.6216
ccgcccggggccggggccggggagccgcgcgg	chr2:42275202-42275460(+)$1	258	78	110	17.0810
CGGcggcccggccagcccggcccggcccggGG	chr20:62371148-62371379(+)$1	231	29	61	15.8648
GCUGCgcggggacggcucggucggggcgcggg	chr16:89895051-89895309(+)$1	258	104	136	16.8108
GAGGGGAAGGGAGGGGGCGGGCAGGUGCAGCG	chr22:31741485-31741706(-)$1	221	58	90	25.4594
AGUUAGCGGGCGCGGGGCAGGGAGGCCGGGGC	chr9:97767347-97767605(+)$1	258	19	51	19.2432
GACGGGCGGGUAUGGGCCGCGCGGGCGCAGGC	chr19:1104601-1104871(+)$1	270	121	153	16.8108
GGAGUGGGUGUCGGGGGCGCGGGGCCAGCGCG	chr17:73512685-73512930(+)$1	245	30	62	17.2162
GGGCGGGAGGGAGCGGGCGGAGCGGGAGGGCU	chr19:460830-461083(-)$1	253	3	35	19.6486
gaggcgcagggcgcgggcgccuacgguuggcg	chr15:78369842-78370059(-)$1	217	23	55	19.2432
ggggugcggggugcggggugcggggcgcgggg	chr9:136223066-136223330(-)$1	264	84	116	25.5945
GAGGGGCAGGGUGGGCCCCGGGAGGGUUGAGC	chr1:227164984-227165296(+)$1	312	261	293	18.2972
GGGGCUCAGCACGGGCGGAGGGAGGCCCUGGU	chr9:139102935-139103226(-)$1	291	138	170	18.8378
cgagggcagcgcgggcggcgggcggcgcgcgg	chr3:52567609-52567899(-)$1	290	109	141	19.6486
AAAGCACAGGUGGGUGGCGGGCAGGCUGGGUG	chr19:7679887-7680177(+)$1	290	81	113	16.8108
gaggcgcagggcgcgggcgccuacgguuggcg	chr15:78369860-78370070(-)$1	210	34	66	19.2432
GUCGCGGAGGCCGGGCCCAGGCGGGACCGGGG	chr20:61847050-61847321(-)$1	271	191	223	20.0540

#otherMatches

#Struct PSSM
e$$$$$dddd[bb[bbnnnnnbbbbdddd555	chr6:34857057-34857318(+)$1	261	89	121	20.4594
DD}EEEEE}BBBB}CCCZZZCCC:::::::::	chr21:47565651-47565894(-)$1	243	205	237	20.4594
nnnffffff4444ccchhhhhhhhcccbb[bb	chr8:144672182-144672445(-)$1	263	84	116	24.6486
clllccc==========[ggggggg!!bb[gg	chr2:42275452-42275696(+)$1	244	105	137	24.1081
A{BBHHHHHHHH{FFFFFF{DDDDJJJJJJJJ	chr19:2015468-2015751(-)$1	283	63	95	15.4594
HHDDDD:a[gggggggpppppppggggggg]a	chr2:242447735-242448008(-)$1	273	212	244	21.6756
bb22eeeee]ddddHHHHHHHH{DDDD::ggg	chr7:99755794-99756072(-)$1	278	118	150	16.4054
mmmdddd:a[dddd[cccpppppppccc]ddd	chr15:78369834-78370042(-)$1	208	6	38	19.2432
[ffffffooooooffffff]cccA}JJJJJJJ	chr17:30264209-30264498(+)$1	289	97	129	17.7567
ddddbb::EEEEE::::JJJJJJJJJJJJJJg	chr19:45801024-45801274(+)$1	250	21	53	23.2972
nnnnnffffffeeeee:EEEEE::ddddmmmm	chr9:130160098-130160349(+)$1	251	15	47	14.6486
dd:hhhhhhhhmmmmhhhhhhhhJJJJJJJJJ	chr3:98451681-98451921(+)$1	240	201	233	21.0000
:FFFFFF:::ccc[bb[gggggggeeeeehhh	chr17:36878231-36878475(+)$1	244	101	133	17.2162
ffffff[eeeee"""bb[ccc[bbmmmmbbcc	chr1:27320725-27320996(+)$1	271	141	173	18.4324
d]a22dddd]a]a]ffffffhhhhhhhhgggg	chr8:145687815-145688067(-)$1	252	42	74	25.1891
:DDDD:::ffffff[cccdddd####ccc[bb	chr22:39134582-39134837(+)$1	255	86	118	14.2432
[annnnna]dddd22ffffff]bb]cccdddd	chr6:37138568-37138883(+)$1	315	108	140	16.6756
KFFFFFF:GGGGGGG:::ggggggg!!eeeee	chr11:65325150-65325431(-)$1	281	128	160	17.7567
============]aeeeee]a22ccc]dddd:	chr9:74979420-74979699(-)$1	279	130	162	16.8108
doooooodddd:CCC{GGGGGGGDDDD{DDDD	chr7:77166705-77166977(+)$1	272	4	36	17.0810
hhhhhh"""dddd!!bb[bb[bbrrrrrrrrr	chr22:50722318-50722570(-)$1	252	91	123	37.6216
''bbeeeee[ggggggg[ggggggg[ccc[dd	chr2:42275202-42275460(+)$1	258	78	110	17.0810
b[a[dddd[ddddnnnnndddd]dddda]bb]	chr20:62371148-62371379(+)$1	231	29	61	15.8648
ee]bb]bb]bb]ffffff:HHHHHHHHeeeee	chr16:89895051-89895309(+)$1	258	104	136	16.8108
mbbffffff]a]ccc]ddddCCC}DDDDYYEE	chr22:31741485-31741706(-)$1	221	58	90	25.4594
ffff[eeeee[dddd####bbmmmmbb4444d	chr9:97767347-97767605(+)$1	258	19	51	19.2432
::dddd[dddd[bbffffffbb!!bb[a[eee	chr19:1104601-1104871(+)$1	270	121	153	16.8108
{DDDDCCC{AKKJJJJJJJJJJJJ{FFFFFF:	chr17:73512685-73512930(+)$1	245	30	62	17.2162
HHHHHBB{CCC{CCCKKCCC:ccceeeeemmm	chr19:460830-461083(-)$1	253	3	35	19.6486
mmmdddd]bb]ccc22ffffff::::::dddd	chr15:78369842-78370059(-)$1	217	23	55	19.2432
ddbb[eeeee[bb!!bb[a[ffffff[aoooo	chr9:136223066-136223330(-)$1	264	84	116	25.5945
gggggFFFFFFDDDD:::::bb[gggggggnn	chr1:227164984-227165296(+)$1	312	261	293	18.2972
gggggg:::EEEEE}GGGGGGG}CCCYYEEEE	chr9:139102935-139103226(-)$1	291	138	170	18.8378
c[ggggggg[a[eeeeecccffffff[fffff	chr3:52567609-52567899(-)$1	290	109	141	19.6486
^^^dddd]ccc]dddd]a:::BB}HHHHHHHH	chr19:7679887-7680177(+)$1	290	81	113	16.8108
mmmdddd]bb]ccc22ffffff:ccceeeee[	chr15:78369860-78370070(-)$1	210	34	66	19.2432
gggggg!!dddd[eeeee"""ffffffmmmmf	chr20:61847050-61847321(-)$1	271	191	223	20.0540

#DB
(.....((((.((.((.....))))))))...	chr6:34857057-34857318(+)$1	1	89	121	20.4594
)).))))).)))).)))...))).........	chr21:47565651-47565894(-)$1	1	205	237	20.4594
...))))))....)))(((((((((((((.((	chr8:144672182-144672445(-)$1	1	84	116	24.6486
(...)))((((((((((.(((((((..((.((	chr2:42275452-42275696(+)$1	1	105	137	24.1081
(.((((((((((.((((((.((((((((((((	chr19:2015468-2015751(-)$1	1	63	95	15.4594
)))))).(.(((((((.......))))))).)	chr2:242447735-242448008(-)$1	1	212	244	21.6756
))..))))).))))((((((((.((((..(((	chr7:99755794-99756072(-)$1	1	118	150	16.4054
...)))).(.((((.(((.......))).)))	chr15:78369834-78370042(-)$1	1	6	38	19.2432
.((((((......)))))).)))).)))))))	chr17:30264209-30264498(+)$1	1	97	129	17.7567
))))))..(((((....(((((((((((((((	chr19:45801024-45801274(+)$1	1	21	53	23.2972
.....))))))))))).(((((..((((....	chr9:130160098-130160349(+)$1	1	15	47	14.6486
)).((((((((....)))))))))))))))))	chr3:98451681-98451921(+)$1	1	201	233	21.0000
.))))))...(((.((.(((((((((((((((	chr17:36878231-36878475(+)$1	1	101	133	17.2162
((((((.(((((...((.(((.((....))))	chr1:27320725-27320996(+)$1	1	141	173	18.4324
).)..)))).).).))))))((((((((((((	chr8:145687815-145688067(-)$1	1	42	74	25.1891
.((((...((((((.(((((((....(((.((	chr22:39134582-39134837(+)$1	1	86	118	14.2432
.(.....).))))..)))))).)).)))((((	chr6:37138568-37138883(+)$1	1	108	140	16.6756
.((((((.(((((((...(((((((..(((((	chr11:65325150-65325431(-)$1	1	128	160	17.7567
)))))))))))).)))))).)..))).)))).	chr9:74979420-74979699(-)$1	1	130	162	16.8108
(......)))).(((.(((((((((((.((((	chr7:77166705-77166977(+)$1	1	4	36	17.0810
((((((...((((..((.((.((.........	chr22:50722318-50722570(-)$1	1	91	123	37.6216
..(((((((.(((((((.(((((((.(((.((	chr2:42275202-42275460(+)$1	1	78	110	17.0810
(.(.((((.((((.....)))).))))).)).	chr20:62371148-62371379(+)$1	1	29	61	15.8648
)).)).)).)).)))))).(((((((((((((	chr16:89895051-89895309(+)$1	1	104	136	16.8108
.)))))))).).))).))))))).))))..))	chr22:31741485-31741706(-)$1	1	58	90	25.4594
((((.(((((.((((....((....))....)	chr9:97767347-97767605(+)$1	1	19	51	19.2432
..((((.((((.((((((((((..((.(.(((	chr19:1104601-1104871(+)$1	1	121	153	16.8108
.(((((((.(..((((((((((((.((((((.	chr17:73512685-73512930(+)$1	1	30	62	17.2162
(((((((.(((.(((..(((.((((((((...	chr19:460830-461083(-)$1	1	3	35	19.6486
...)))).)).)))..))))))......((((	chr15:78369842-78370059(-)$1	1	23	55	19.2432
((((.(((((.((..((.(.((((((.(....	chr9:136223066-136223330(-)$1	1	84	116	25.5945
))))))))))))))).....((.(((((((..	chr1:227164984-227165296(+)$1	1	261	293	18.2972
))))))...))))).))))))).)))..))))	chr9:139102935-139103226(-)$1	1	138	170	18.8378
(.(((((((.(.((((((((((((((.(((((	chr3:52567609-52567899(-)$1	1	109	141	19.6486
...)))).))).)))).)...)).))))))))	chr19:7679887-7680177(+)$1	1	81	113	16.8108
...)))).)).)))..)))))).((((((((.	chr15:78369860-78370070(-)$1	1	34	66	19.2432
((((((..((((.(((((...((((((....)	chr20:61847050-61847321(-)$1	1	191	223	20.0540

#PSSM
G : 0.48	g : 0.27	A : 0.10	C : 0.08	c : 0.05	
G : 0.43	g : 0.18	A : 0.13	a : 0.10	C : 0.08	c : 0.02	U : 0.02	
G : 0.43	g : 0.27	A : 0.08	U : 0.08	C : 0.08	a : 0.05	
G : 0.48	g : 0.27	C : 0.10	U : 0.05	c : 0.05	a : 0.02	
G : 0.24	C : 0.21	g : 0.13	c : 0.13	U : 0.10	A : 0.08	a : 0.05	u : 0.02	
G : 0.40	g : 0.32	C : 0.13	c : 0.08	U : 0.02	A : 0.02	
c : 0.29	C : 0.29	G : 0.16	g : 0.10	U : 0.10	A : 0.02	
G : 0.27	A : 0.24	g : 0.18	a : 0.13	c : 0.08	C : 0.05	U : 0.02	
G : 0.51	g : 0.35	U : 0.05	c : 0.05	C : 0.02	
G : 0.45	g : 0.29	c : 0.10	C : 0.08	A : 0.02	U : 0.02	
g : 0.27	G : 0.24	U : 0.16	C : 0.16	c : 0.08	u : 0.05	A : 0.02	
c : 0.29	C : 0.27	G : 0.18	A : 0.10	a : 0.05	g : 0.02	u : 0.02	U : 0.02	
G : 0.40	g : 0.29	C : 0.10	c : 0.10	U : 0.05	A : 0.02	
G : 0.45	g : 0.24	c : 0.13	A : 0.08	C : 0.05	a : 0.02	
G : 0.48	g : 0.37	C : 0.05	u : 0.02	A : 0.02	U : 0.02	
G : 0.40	g : 0.29	C : 0.10	c : 0.08	U : 0.05	a : 0.02	A : 0.02	
G : 0.40	g : 0.29	U : 0.08	c : 0.08	C : 0.08	A : 0.02	u : 0.02	
C : 0.43	c : 0.29	G : 0.10	g : 0.08	A : 0.05	a : 0.02	
G : 0.35	g : 0.32	C : 0.10	A : 0.10	a : 0.02	U : 0.02	u : 0.02	c : 0.02	
G : 0.43	g : 0.32	U : 0.08	c : 0.08	C : 0.05	A : 0.02	
G : 0.51	g : 0.21	c : 0.16	C : 0.05	u : 0.02	A : 0.02	
G : 0.29	C : 0.27	g : 0.18	c : 0.13	u : 0.08	A : 0.02	
A : 0.27	C : 0.16	c : 0.16	G : 0.16	a : 0.16	g : 0.08	
G : 0.54	g : 0.27	c : 0.13	C : 0.02	U : 0.02	
G : 0.48	g : 0.29	c : 0.08	A : 0.05	C : 0.05	a : 0.02	
C : 0.35	c : 0.24	G : 0.18	g : 0.10	u : 0.02	a : 0.02	U : 0.02	A : 0.02	
A : 0.24	C : 0.21	g : 0.13	c : 0.13	G : 0.13	u : 0.08	U : 0.05	
C : 0.32	G : 0.21	g : 0.13	u : 0.10	c : 0.10	U : 0.08	A : 0.02	
G : 0.37	g : 0.24	U : 0.13	C : 0.08	c : 0.08	A : 0.05	u : 0.02	
G : 0.59	g : 0.27	c : 0.05	a : 0.02	C : 0.02	A : 0.02	
G : 0.51	g : 0.24	C : 0.13	c : 0.08	U : 0.02	
G : 0.45	g : 0.27	C : 0.13	U : 0.08	c : 0.05	

#score	726.0540540540543
#seq	37
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_transcript_m1_run1.nuc.txt

#NT
GGAGGGGGCGAGUGUAGUGCUGCGCGGGGCAGGCGGGAGGUG	chr3:138553461-138553737(-)$1	276	50	92	20.7321
ggggguacgggugggggugcgggucggggugggggcggaggg	chr11:14520976-14521223(-)$1	247	71	113	27.6071
GGCGGAGCCCUGGGCCGGGGUGGGGCGGGAUGGGAGAUGGGG	chr19:18547571-18547847(-)$1	276	68	110	27.8749
GGCGGAGGCCGCGGCUGGUACUGGGAGGGUGGCAGGGAGGGA	chr1:153930840-153931111(-)$1	271	84	126	26.1785
ggcggcggcggcggAAGCCGAGGGGUgggcagggcgggggcg	chr13:42846192-42846440(+)$1	248	3	45	35.5535
GAGGAAGGAgccggcggcgcggggggcagcgcgggcgccggg	chr19:5719788-5720057(-)$1	269	184	226	21.7142
AgccgccgccgccgcgccgcuggggggggUGGGGGGAGCUAG	chr2:230786504-230786756(-)$1	252	64	106	24.9285
GGAGGCGCAGGCGCAGGCGCAGUGGGGGUGAGGGCGCGUGGG	chr1:249153072-249153315(-)$1	243	148	190	24.3035
GCGGGAGGGCGCCGCGGUGAGGGUGGGGGAGGGGGCGCGGGG	chr1:245026667-245026910(-)$1	243	91	133	33.7678
GGGCGGGGAAGAGUCUGGGGUgggcggggccgggcggggcgg	chr19:6739607-6739900(+)$1	293	13	55	28.7678
ggggguggggggagcggacgggaggcgggguggagguggggu	chr17:77812533-77812779(-)$1	246	45	87	29.7499
gggugagccggggcgggagcaggcggggacgggACGGAGAGG	chr11:66495390-66495665(-)$1	275	147	189	27.0714
CGCCGGGUGGAGGUUGGCGCGGGUAGGGGAGGGUGUGGGGCG	chr17:43024913-43025181(-)$1	268	55	97	21.7142
ggcccgggacgcggcgggccuggggcgucggggccgaggcgc	chr20:5591231-5591489(-)$1	258	67	109	22.6071
cggggcgggcgcgggggcgggcgcgggggcgggcgcgggcCA	chr15:27333344-27333601(+)$1	257	47	89	30.1964
ggugggagggggcgguaagcgggggcuggggggagggggcgg	chr19:40791074-40791368(-)$1	294	64	106	28.4107
CGCGGCCGGCGUUGCGCCGCGGCGGAGGGUGGGCGCGCGGGG	chr4:78078369-78078626(+)$1	257	63	105	24.3928
ugcugcgagagcggcggcggcggcgcgggucggcagcgggag	chr7:44887469-44887718(-)$1	249	67	109	26.8035
gccgggggugggggcggaagggcggcgggcggaaggcaggag	chr2:183902904-183903208(-)$1	304	117	159	29.1249
GCCGCUGUAGGGGGAGGAgccgcgggcgggcggcgggaggga	chr1:245026464-245026712(-)$1	248	69	111	24.7499
CGGCCGGGAAGGGGCGGUGCGGGAGGCGGGGUGUGGGGCGGU	chrX:77359654-77359919(+)$1	265	19	61	22.8749
cucgcucgggccggcgggggUGGGGGGUGGGGGGAGUGGGUG	chr17:79373147-79373416(+)$1	269	69	111	23.8571
GGGAGCCGGAGGACCGgagcgggcgcgcgagggaggcggcgg	chr10:7452754-7453066(-)$1	312	90	132	26.0892
GGCAGUGCACGGGGCCUGGGUGGGGGGUGCGGGUGUGGGUGG	chr13:115000302-115000568(+)$1	266	66	108	27.1607
agcggcgcccgggccggggccgggggcggguggggagggggg	chr8:30669827-30670092(-)$1	265	63	105	34.7499
ggccccggccccggcggggcgggcgUUGCCGGGAGGCGGAGG	chr7:111202348-111202594(-)$1	246	199	241	30.4642
GGUGGCGGAGGGGGAUGGGCGGGGGCGGGGAUGAGGGCGGCG	chr1:87380273-87380566(+)$1	293	3	45	33.2321
ACCCgcggcggcggcggcggcggcggcggcggcggcggGGCU	chr1:247094690-247094957(-)$1	267	139	181	29.4821
ggccccggccccggcggggcgggcgUUGCCGGGAGGCGGAGG	chr7:111202238-111202521(-)$1	283	126	168	30.4642
ggggcgggcgggcgccgaggcggcgcgggcgggacgagcggu	chr1:1243139-1243406(-)$1	267	101	143	25.9999
GGCGGCGGGGGCGGGGGGAGAGGUGGUGAACGCGAGGGGCAG	chr18:43678109-43678357(-)$1	248	3	45	25.1071
CGCGGCGGCGUCCCCAGAGGCGCGUGGGGCGGGCGGGGCUGG	chr15:42867759-42868022(+)$1	263	29	71	23.4107
ggaggaggaggagaaggagagagggagggcggagggcggagg	chr11:64949279-64949544(+)$1	265	50	92	29.1249
gcgcgcgugcgcagggcaggucggggggggggggggggcggg	chr2:47142760-47143053(-)$1	293	65	107	27.6964
gcaggcgagcgcgaggggggugggggcagagggaggugggga	chr6:149638676-149638943(+)$1	267	79	121	25.1071
gggggaggacgcggaagaggagcugugggaagggggaggagg	chr17:43225810-43226081(+)$1	271	78	120	27.4285
GGCUGCGCGGGAGGAGGGGACCAGUCGCGCUGGGGGUGGGCG	chr18:77867064-77867406(+)$1	342	105	147	21.2678
GGGCAAGGAGUGGCUGGAGAGAGGGCGGGAGUGGGGGCGGGG	chr16:30662130-30662417(+)$1	287	16	58	23.9464
GGCGCUCGGGGUGGGGGAGCCAGGAGGGGCGGGAGACGGGCG	chr19:1104627-1104870(+)$1	243	61	103	28.4999
ggcgggggggugggggcugcgcgggggcgggAGUGGCGGAGG	chr2:139259405-139259702(+)$1	297	2	44	27.4285
GUCAGAGGCGGCGGCGGGAGCAGCGGGGACUGCAGGCCGGGG	chr10:129924495-129924745(-)$1	250	174	216	23.9464
GGCCGCGGUGGAGCUAGCAGGCGGGCGGGCGGGAGCGGGCGC	chr3:122785815-122786174(+)$1	359	113	155	24.9285
gcgcgggggcggggcggcgccgggggcggggggcggcgggcg	chr16:2587900-2588217(+)$1	317	51	93	38.3214
ggcggccggagcggcccgcgaggaggcggggagggggugggg	chr17:77812782-77813016(-)$1	234	60	102	25.9999
GGCGGCUGCGGCGGUGACACCGGCCGGGGGCUGGGGGAAGGG	chr4:140097803-140098061(-)$1	258	86	128	22.2499
agaaggggaggcggcagggaagggggugggggCCUGGCGGGG	chr2:46926276-46926541(+)$1	265	84	126	26.8035
GGCCUGGGCUGGGGCGAAGGCGGGCUCGGCCGGAAGGGGUGG	chr7:5569565-5569810(-)$1	245	127	169	24.8392
GCCGGGGAGGGGACGGGAAAGGGGUGgggggugaagggggug	chr1:52195390-52195699(+)$1	309	64	106	21.1785
GGCCGGGAGGGCGGAGGGACGAGGGAAGUCGGCGAGAGGGAG	chr1:52344249-52344519(-)$1	270	57	99	21.7142
gggcuggcgggcggccgggcuggggcggggcggggcggggcg	chr5:179049794-179050037(-)$1	243	49	91	32.5178
gguggcggcuguggcggcggaggggggcgcgggccggcgaug	chr22:19419049-19419362(-)$1	313	180	222	31.5357
GGCUGCGGCGGCCUCGGUCGGCGCGGCGGAGGGAGGCGGCUG	chr12:30907473-30907727(-)$1	254	52	94	25.6428
GGCAGUccgcggggagcggccggggagggcgggcggcggcga	chr18:9613961-9614245(-)$1	284	49	91	27.9642
ggaggaggagggggaggagaaggaggaggugggguggggggg	chr2:20550435-20550706(-)$1	271	175	217	36.2678
ggccuacaaggaggcggggccggcgggggcggggccgggcUC	chr7:1498959-1499207(-)$1	248	25	67	25.1071

#otherMatches

#Struct PSSM
b[bbmmmmbb]bb]iiiiiiiii]bbhhhhhhhhJJJJJJJJ	chrX:153686525-153686889(+)$1	364	106	148	31.0892
4444a333bb22================]a:::cccpppppp	chr3:138553461-138553737(-)$1	276	50	92	20.7321
GGGGGGKKCCC{CCCeeeeeccc[==========[bb"""dd	chr11:14520976-14521223(-)$1	247	71	113	27.6071
eeee22ccc]bbggggggg!!a[iiiiiiiii''''''''gg	chr19:18547571-18547847(-)$1	276	68	110	27.8749
hhhmmmmhhhhhhhhbb[ddddnnnnndddd]bb::::::::	chr1:153930840-153931111(-)$1	271	84	126	26.1785
DDD{CCC:ddddmmmmdddd:A{HHHHHHHH{A{CCC{A{A{	chr13:42846192-42846440(+)$1	248	3	45	35.5535
DDDD}EEEEEYYDDDD}FFFFFFddddeeeee[a!!ffffff	chr19:5719788-5720057(-)$1	269	184	226	21.7142
KKBB{BB{EEEEE{A{BBccc[bb[bb[dddd[bb!!cccoo	chr2:230786504-230786756(-)$1	252	64	106	24.9285
mmmbb]bb]cccffffff]a333dddd]bb22bb55555fff	chr1:249153072-249153315(-)$1	243	148	190	24.3035
ccc333dddd]bb88888888ffffff4444iiiiiiiii44	chr1:245026667-245026910(-)$1	243	91	133	33.7678
EEEEE{CCC:::::::dddd[dddd!!eeeee"""ggggggg	chr19:6739607-6739900(+)$1	293	13	55	28.7678
b]dddd::==========bb[bb[ggggggg####bb[dddd	chr17:77812533-77812779(-)$1	246	45	87	29.7499
hhh]dddd22ggggggg]bb:ccc[bb[gggggggppppppp	chr11:66495390-66495665(-)$1	275	147	189	27.0714
2iiiiiiiii::CCC{FFFFFFLLLBBiiiiiiiiillliii	chr17:43024913-43025181(-)$1	268	55	97	21.7142
ggggggdddd[a[bba[dddd[bb[annnnna]bb]dddd]a	chr20:5591231-5591489(-)$1	258	67	109	22.6071
A::bb[ffffff[hhhhhhhhccc"""ccc[a[ccc"""ccc	chr15:27333344-27333601(+)$1	257	47	89	30.1964
DDDDLLLBB{GGGGGGG{DDDD{CCC{BB{Aa[a[bb[dddd	chr19:40791074-40791368(-)$1	294	64	106	28.4107
eeeeccc[bb[bb[cccmmmmccc]bb]bb]ccc]eeeeecc	chr4:78078369-78078626(+)$1	257	63	105	24.3928
ffffffmmmmffffff]dddd]bb:::a[eeeee[ccc[amm	chr7:44887469-44887718(-)$1	249	67	109	26.8035
]dddd:EEEEE}EEEEEZZZFFFFFF}EEEEE::eeeeemmm	chr2:183902904-183903208(-)$1	304	117	159	29.1249
fff:bbqqqqqqqqbb::iiiiiiiii[ccc!!ddddooooo	chr1:245026464-245026712(-)$1	248	69	111	24.7499
GGGGGCCC{EEEEEEEEEE::ffffff=============""	chrX:77359654-77359919(+)$1	265	19	61	22.8749
qqqbb]ffffffggggggg]dddd::::GGGGGGG{EEEEEK	chr17:79373147-79373416(+)$1	269	69	111	23.8571
DDD{EEEEE{DDDD{A{CCC{EEEEEbb!!ffffffbb[ccc	chr10:7452754-7453066(-)$1	312	90	132	26.0892
hhhhh]bb4444a]eeeee::eeeee[ggggggg[aoooooo	chr13:115000302-115000568(+)$1	266	66	108	27.1607
mma22a]ccc22ccc333dddd22a]eeeee55555======	chr8:30669827-30670092(-)$1	265	63	105	34.7499
GGGGGGG}BBCCC}CCCGGGGGGG}EEEEE?????BB:::::	chr7:111202348-111202594(-)$1	246	199	241	30.4642
{BB{BB{BB{AMMMMCCCdddd!!ccc[aqqqqqqqqa22cc	chr1:87380273-87380566(+)$1	293	3	45	33.2321
:eeeee[bb[bb[bb[bbmmmmbb]bb]bb]bb]eeeeeeee	chr1:247094690-247094957(-)$1	267	139	181	29.4821
bbggggggghhhhhhhh[ammmma]hhhhhhhhdddd"""ff	chr7:111202238-111202521(-)$1	283	126	168	30.4642
bba[ggggggg!!dddd[a[dddd[eeeee[aooooooa]ee	chr1:1243139-1243406(-)$1	267	101	143	25.9999
C{DDDDKKBBBBdddd[ddddccc[a[a!!gggggggbbccc	chr18:43678109-43678357(-)$1	248	3	45	25.1071
g[a[cccbb[bbmmmmbb]bb]ccc]a]ggggggg]bbgggg	chr15:42867759-42868022(+)$1	263	29	71	23.4107
E{BBKKBBCCCKKFFFFFFLLLBBLLLCCCFFFFFFKKA{DD	chr11:64949279-64949544(+)$1	265	50	92	29.1249
bb]ccc]ccc]bb]ccc22ffffff::HHHHHHHH{A{DDDD	chr2:47142760-47143053(-)$1	293	65	107	27.6964
I::dddd[bbbb[bb[ccc[ggggggg[bb[bb[eeeee[a!	chr6:149638676-149638943(+)$1	267	79	121	25.1071
c[aooooooa]ccc:::::a[ggggggg"""bb[ffffff[c	chr17:43225810-43226081(+)$1	271	78	120	27.4285
=oooooo=============::CCC}A}BBEEEEEFFFFFF{	chr18:77867064-77867406(+)$1	342	105	147	21.2678
ffff::::::::DDDD{DDDDLLLBB{CCCKKHHHHHHHHee	chr16:30662130-30662417(+)$1	287	16	58	23.9464
lllccceeeeeffffff]ccc]eeeeebbeeeee::dddd[d	chr19:1104627-1104870(+)$1	243	61	103	28.4999
:::EEEEE{BBKKDDDD{A{BBKKFFFFFF{EEEEECCC:GG	chr2:139259405-139259702(+)$1	297	2	44	27.4285
ii$$$$$bbmmmmbb7777777iiiiiiiii333ddddeeee	chr10:129924495-129924745(-)$1	250	174	216	23.9464
nggggggg:EEEEEKKEEEEE{EEEEE{FFFFFFCCC:ffff	chr3:122785815-122786174(+)$1	359	113	155	24.9285
==[apppppppa]===========ccc[a[dddd$$$$$ccc	chr16:2587900-2588217(+)$1	317	51	93	38.3214
KKAKKCCCKKBB::eeeeeooooooeeeee::eeeee[hhhh	chr17:77812782-77813016(-)$1	234	60	102	25.9999
e22dddd]bbdddd]eeeee]ccc22eeeee]eeeee::fff	chr4:140097803-140098061(-)$1	258	86	128	22.2499
:::::DDDD{A{CCCKKCCCKKBB{DDDD::==========[	chr2:46926276-46926541(+)$1	265	84	126	26.8035
:ddddoooooodddd:::eeeee[dddd[bbnnnnnbb]ddd	chr7:5569565-5569810(-)$1	245	127	169	24.8392
nnnnnggggggg]bb666666bb]ccca[dddd[ccc[cccb	chr1:52195390-52195699(+)$1	309	64	106	21.1785
b[bbmmmmbb]bb22bbdddd333bb22eeeee]addddddd	chr1:52344249-52344519(-)$1	270	57	99	21.7142
JJJBBggggggg[ggggggg!!ffffff[ddddbb[ccc"""	chr5:179049794-179050037(-)$1	243	49	91	32.5178
DDD}BBDDDD}AYYBBYYBBYYFFFFFF:a[eeeee[bb[a[	chr22:19419049-19419362(-)$1	313	180	222	31.5357
======!!a[ffffff!!ffffffccc[a####dddd[ccc[	chr12:30907473-30907727(-)$1	254	52	94	25.6428
e[a!!ccc[cccpppppppccc]ccc]a]eeeee]bb]hhhh	chr18:9613961-9614245(-)$1	284	49	91	27.9642
ffff333eeeee]dddd4444eeeee>>>>>>>>>>>>a]bb	chr2:20550435-20550706(-)$1	271	175	217	36.2678
d[dddd!!eeeee[dddd[eeeeerrrrrrrrreeeee]ddd	chr7:1498959-1499207(-)$1	248	25	67	25.1071

#DB
(.((....)).)).))))))))).))))))))))))))))))	chrX:153686525-153686889(+)$1	1	106	148	31.0892
....)...))..)))))))))))))))).)...(((......	chr3:138553461-138553737(-)$1	1	50	92	20.7321
((((((..(((.(((((((((((.((((((((((.((...((	chr11:14520976-14521223(-)$1	1	71	113	27.6071
))))..))).))(((((((..(.(((((((((........((	chr19:18547571-18547847(-)$1	1	68	110	27.8749
(((....))))))))((.((((.....)))).))........	chr1:153930840-153931111(-)$1	1	84	126	26.1785
(((.(((.((((....)))).(.((((((((.(.(((.(.(.	chr13:42846192-42846440(+)$1	1	3	45	35.5535
)))).)))))..)))).))))))(((((((((.(..((((((	chr19:5719788-5720057(-)$1	1	184	226	21.7142
..((.((.(((((.(.(((((.((.((.((((.((..(((..	chr2:230786504-230786756(-)$1	1	64	106	24.9285
...)).)).))))))))).)...)))).))..)).....)))	chr1:249153072-249153315(-)$1	1	148	190	24.3035
)))...)))).))........))))))....)))))))))..	chr1:245026667-245026910(-)$1	1	91	133	33.7678
(((((.(((.......((((.((((..(((((...(((((((	chr19:6739607-6739900(+)$1	1	13	55	28.7678
).))))..((((((((((((.((.(((((((....((.((((	chr17:77812533-77812779(-)$1	1	45	87	29.7499
))).))))..))))))).)).(((.((.(((((((.......	chr11:66495390-66495665(-)$1	1	147	189	27.0714
.)))))))))..(((.((((((...(((((((((((...)))	chr17:43024913-43025181(-)$1	1	55	97	21.7142
((((((((((.(.(((.((((.((.(.....).)).)))).)	chr20:5591231-5591489(-)$1	1	67	109	22.6071
(..((.((((((.(((((((((((...(((.(.(((...(((	chr15:27333344-27333601(+)$1	1	47	89	30.1964
((((...((.(((((((.((((.(((.((.((.(.((.((((	chr19:40791074-40791368(-)$1	1	64	106	28.4107
(((((((.((.((.(((....))).)).)).))).)))))))	chr4:78078369-78078626(+)$1	1	63	105	24.3928
((((((....)))))).)))).))...(.(((((.(((.(..	chr7:44887469-44887718(-)$1	1	67	109	26.8035
.)))).))))).)))))...)))))).)))))..(((((...	chr2:183902904-183903208(-)$1	1	117	159	29.1249
))).((........))..(((((((((.(((..((((.....	chr1:245026464-245026712(-)$1	1	69	111	24.7499
((((((((.((((((((((..(((((((((((((((((((..	chrX:77359654-77359919(+)$1	1	19	61	22.8749
...)).))))))))))))).))))....(((((((.(((((.	chr17:79373147-79373416(+)$1	1	69	111	23.8571
(((.(((((.((((.(.(((.(((((((..((((((((.(((	chr10:7452754-7453066(-)$1	1	90	132	26.0892
))))).))....).)))))..(((((.(((((((.(......	chr13:115000302-115000568(+)$1	1	66	108	27.1607
..)..).)))..)))...))))..).))))).....))))))	chr8:30669827-30670092(-)$1	1	63	105	34.7499
))))))).))))).)))))))))).))))).....)).....	chr7:111202348-111202594(-)$1	1	199	241	30.4642
.((.((.((.(....(((((((..(((.(........)..))	chr1:87380273-87380566(+)$1	1	3	45	33.2321
.(((((.((.((.((.((....)).)).)).)).)))))(((	chr1:247094690-247094957(-)$1	1	139	181	29.4821
)))))))))((((((((.(....).))))))))((((...((	chr7:111202238-111202521(-)$1	1	126	168	30.4642
(((.(((((((..((((.(.((((.(((((.(......).))	chr1:1243139-1243406(-)$1	1	101	143	25.9999
(.((((..((((((((.(((((((.(.(..((((((((((((	chr18:43678109-43678357(-)$1	1	3	45	25.1071
(.(.(((((.((....)).)).))).).))))))).))((((	chr15:42867759-42868022(+)$1	1	29	71	23.4107
(.((..(((((..((((((...((...(((((((((..(.((	chr11:64949279-64949544(+)$1	1	50	92	29.1249
)).))).))).)).)))..))))))..((((((((.(.((((	chr2:47142760-47143053(-)$1	1	65	107	27.6964
(..((((.((((.((.(((.(((((((.((.((.(((((.(.	chr6:149638676-149638943(+)$1	1	79	121	25.1071
(.(......).))).....(.(((((((...((.((((((.(	chr17:43225810-43226081(+)$1	1	78	120	27.4285
(......)))))))))))))..))).).)))))))((((((.	chr18:77867064-77867406(+)$1	1	105	147	21.2678
))))........((((.((((...((.(((..((((((((((	chr16:30662130-30662417(+)$1	1	16	58	23.9464
...)))))))))))))).))).))))))))))))..((((.(	chr19:1104627-1104870(+)$1	1	61	103	28.4999
...(((((.((..((((.(.((..((((((.((((((((.((	chr2:139259405-139259702(+)$1	1	2	44	27.4285
((.....((....)).......)))))))))...))))((((	chr10:129924495-129924745(-)$1	1	174	216	23.9464
.))))))).(((((..(((((.(((((.(((((((((.((((	chr3:122785815-122786174(+)$1	1	113	155	24.9285
((.(.......).)))))))))))(((.(.((((.....(((	chr16:2587900-2588217(+)$1	1	51	93	38.3214
..(..(((..((..(((((......)))))..(((((.((((	chr17:77812782-77813016(-)$1	1	60	102	25.9999
)..)))).)))))).))))).)))..))))).)))))..(((	chr4:140097803-140098061(-)$1	1	86	128	22.2499
.....((((.(.(((..(((..((.((((..((((((((((.	chr2:46926276-46926541(+)$1	1	84	126	26.8035
.((((......))))...(((((.((((.((.....)).)))	chr7:5569565-5569810(-)$1	1	127	169	24.8392
.....))))))).))......)).)))(.((((.(((.((((	chr1:52195390-52195699(+)$1	1	64	106	21.1785
(.((....)).))..))))))...))..))))).))))))))	chr1:52344249-52344519(-)$1	1	57	99	21.7142
((((((((((((.(((((((..((((((.((((((.(((...	chr5:179049794-179050037(-)$1	1	49	91	32.5178
))).)))))).)..))..))..)))))).(.(((((.((.(.	chr22:19419049-19419362(-)$1	1	180	222	31.5357
((((((..(.((((((..(((((((((.(....((((.(((.	chr12:30907473-30907727(-)$1	1	52	94	25.6428
(.(..(((.(((.......))).))).).))))).)).))))	chr18:9613961-9614245(-)$1	1	49	91	27.9642
))))...))))).))))....)))))............).))	chr2:20550435-20550706(-)$1	1	175	217	36.2678
(.((((..(((((.((((.(((((.........))))).)))	chr7:1498959-1499207(-)$1	1	25	67	25.1071

#PSSM
G : 0.41	g : 0.39	C : 0.07	A : 0.03	c : 0.03	a : 0.03	u : 0.01	
g : 0.41	G : 0.39	C : 0.07	c : 0.07	A : 0.01	u : 0.01	U : 0.01	
C : 0.33	c : 0.23	g : 0.16	G : 0.10	a : 0.07	A : 0.03	u : 0.03	U : 0.01	
g : 0.30	G : 0.24	c : 0.14	C : 0.14	A : 0.07	u : 0.03	U : 0.03	a : 0.01	
g : 0.39	G : 0.37	c : 0.08	C : 0.05	A : 0.03	u : 0.03	U : 0.01	
c : 0.23	C : 0.17	g : 0.14	G : 0.12	A : 0.10	a : 0.08	U : 0.07	u : 0.05	
g : 0.41	G : 0.39	c : 0.08	C : 0.05	a : 0.03	U : 0.01	
g : 0.37	G : 0.32	c : 0.08	C : 0.07	a : 0.05	U : 0.03	A : 0.03	u : 0.01	
g : 0.23	c : 0.17	G : 0.16	C : 0.14	A : 0.14	a : 0.10	u : 0.01	U : 0.01	
g : 0.30	G : 0.28	c : 0.19	C : 0.08	A : 0.05	a : 0.03	U : 0.01	u : 0.01	
g : 0.46	G : 0.35	c : 0.07	U : 0.05	A : 0.03	u : 0.01	
c : 0.30	G : 0.19	g : 0.17	C : 0.16	A : 0.05	u : 0.03	U : 0.03	a : 0.03	
g : 0.46	G : 0.32	c : 0.05	C : 0.05	U : 0.03	a : 0.03	A : 0.03	
g : 0.48	G : 0.28	C : 0.10	U : 0.05	c : 0.03	a : 0.03	
c : 0.33	C : 0.21	g : 0.12	A : 0.10	U : 0.08	a : 0.07	G : 0.05	
g : 0.41	G : 0.30	A : 0.07	U : 0.05	c : 0.05	u : 0.03	C : 0.03	a : 0.03	
g : 0.44	G : 0.37	c : 0.08	A : 0.03	a : 0.01	C : 0.01	U : 0.01	
g : 0.19	a : 0.17	G : 0.16	c : 0.14	C : 0.10	A : 0.10	U : 0.07	u : 0.03	
g : 0.49	G : 0.26	A : 0.10	c : 0.05	C : 0.03	U : 0.01	a : 0.01	
c : 0.30	g : 0.21	G : 0.17	C : 0.16	A : 0.08	a : 0.05	
g : 0.21	G : 0.17	c : 0.14	C : 0.12	a : 0.10	U : 0.08	u : 0.08	A : 0.05	
g : 0.48	G : 0.28	c : 0.07	A : 0.07	C : 0.05	U : 0.01	a : 0.01	
g : 0.48	G : 0.33	C : 0.05	c : 0.05	u : 0.01	U : 0.01	a : 0.01	A : 0.01	
g : 0.32	G : 0.30	c : 0.16	u : 0.05	U : 0.05	C : 0.05	a : 0.03	A : 0.01	
g : 0.53	G : 0.28	C : 0.05	U : 0.05	c : 0.03	A : 0.03	
g : 0.33	G : 0.24	c : 0.14	C : 0.08	U : 0.07	A : 0.05	a : 0.03	u : 0.01	
g : 0.39	G : 0.30	c : 0.12	C : 0.05	U : 0.05	u : 0.03	A : 0.01	a : 0.01	
g : 0.46	G : 0.37	c : 0.05	a : 0.03	U : 0.03	u : 0.01	C : 0.01	
g : 0.51	G : 0.32	c : 0.03	U : 0.03	C : 0.03	A : 0.03	a : 0.01	
c : 0.23	g : 0.21	C : 0.19	A : 0.10	G : 0.08	u : 0.05	U : 0.05	a : 0.05	
g : 0.39	G : 0.28	c : 0.08	A : 0.05	U : 0.05	C : 0.05	a : 0.03	u : 0.03	
g : 0.48	G : 0.37	U : 0.07	c : 0.01	A : 0.01	a : 0.01	u : 0.01	
g : 0.46	G : 0.39	C : 0.08	a : 0.03	c : 0.01	
g : 0.24	G : 0.17	A : 0.17	a : 0.12	c : 0.12	C : 0.07	U : 0.07	
G : 0.35	g : 0.33	c : 0.10	A : 0.08	C : 0.03	a : 0.03	U : 0.01	u : 0.01	
G : 0.39	g : 0.35	c : 0.12	C : 0.05	U : 0.03	a : 0.01	A : 0.01	
g : 0.30	G : 0.28	C : 0.12	c : 0.10	A : 0.05	a : 0.05	u : 0.03	U : 0.03	
g : 0.39	G : 0.30	C : 0.10	A : 0.07	c : 0.05	a : 0.03	U : 0.01	u : 0.01	
G : 0.42	g : 0.41	c : 0.05	C : 0.05	a : 0.01	U : 0.01	A : 0.01	
G : 0.32	g : 0.30	c : 0.12	U : 0.07	A : 0.07	C : 0.05	a : 0.05	
g : 0.32	G : 0.32	C : 0.10	U : 0.07	c : 0.05	A : 0.05	a : 0.03	u : 0.03	
G : 0.44	g : 0.33	a : 0.05	A : 0.03	u : 0.03	U : 0.03	C : 0.03	c : 0.01	

#score	1519.749999999998
#seq	56
#width	42
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_CDS_m2_run1.nuc.txt

#NT
GGA	chr20:31021569-31021796(+)$1	227	2	5	8.9999
GGA	chr22:38061593-38061873(+)$1	280	6	9	8.9999
GGA	chr6:11190990-11191234(-)$1	244	51	54	8.9999
GGA	chr14:23567086-23567333(+)$1	247	2	5	8.9999
GGA	chr17:53345122-53345448(+)$1	326	11	14	8.9999
GGA	chr6:139694551-139694771(-)$1	220	8	11	8.9999
ggA	chr6:3456391-3456653(-)$1	262	3	6	8.9999
GGA	chr3:5025186-5025446(+)$1	260	201	204	8.9999
GGA	chr6:88411155-88411418(-)$1	263	25	28	8.9999
GGA	chr17:74308922-74309170(-)$1	248	72	75	8.9999
GGA	chr6:36651932-36652228(+)$1	296	20	23	8.9999
GGA	chr16:30976162-30976428(+)$1	266	18	21	8.9999
GGA	chr1:110884396-110884610(+)$1	214	84	87	8.9999
GGA	chr6:31600408-31600632(+)$1	224	4	7	8.9999
GGA	chr18:60191750-60191986(+)$1	236	116	119	8.9999
GGA	chr1:46751651-46751893(-)$1	242	163	166	8.9999
GGA	chr9:140137368-140137622(+)$1	254	53	56	8.9999
GGA	chr17:74307481-74307738(-)$1	257	22	25	8.9999
GGA	chr2:26257455-26257715(+)$1	260	69	72	8.9999
GGA	chr2:97482252-97482593(+)$1	341	4	7	8.9999
GGA	chr14:31364548-31364791(-)$1	243	29	32	8.9999
GGA	chr8:8234139-8234363(-)$1	224	16	19	8.9999
GGA	chr20:54978493-54978753(+)$1	260	44	47	8.9999
GGA	chr16:70697589-70697832(-)$1	243	33	36	8.9999
GGA	chr17:27076021-27076262(+)$1	241	30	33	8.9999
GGA	chr16:30566992-30567237(-)$1	245	37	40	8.9999
GGA	chr7:2577805-2578156(-)$1	351	168	171	8.9999
GGA	chr13:52549092-52549388(-)$1	296	25	28	8.9999
GGA	chr21:34924876-34925181(+)$1	305	149	152	8.9999
GGA	chr7:5427614-5427903(-)$1	289	59	62	8.9999
GGA	chr7:150068798-150069022(+)$1	224	47	50	8.9999
GGA	chr12:104336876-104337094(+)$1	218	46	49	8.9999
GGA	chr2:138721965-138722290(+)$1	325	16	19	8.9999
GGA	chr18:60241777-60242009(+)$1	232	0	3	8.9999
GGA	chr1:8073914-8074125(-)$1	211	79	82	8.9999
GGA	chr2:42557153-42557453(+)$1	300	16	19	8.9999
GGA	chr18:60242619-60242867(+)$1	248	1	4	8.9999
GGA	chr6:114178776-114179090(+)$1	314	111	114	8.9999
GGA	chr18:30350091-30350333(+)$1	242	13	16	8.9999
GGA	chr14:31598439-31598695(-)$1	256	44	47	8.9999
GGA	chr6:139694652-139694901(-)$1	249	46	49	8.9999
GGA	chr20:61542636-61542853(-)$1	217	11	14	8.9999
GGA	chr1:211751524-211751777(-)$1	253	10	13	8.9999
GGA	chr9:140137211-140137440(+)$1	229	210	213	8.9999
GGA	chr20:58514115-58514377(-)$1	262	86	89	8.9999
GGA	chr9:124534837-124535085(+)$1	248	93	96	8.9999
GGA	chr21:34921687-34921917(+)$1	230	12	15	8.9999
GGA	chr18:21136296-21136593(-)$1	297	15	18	8.9999
GGA	chr6:139694571-139694811(-)$1	240	48	51	8.9999
GGA	chr18:60242432-60242680(+)$1	248	83	86	8.9999
GGA	chr9:14775763-14776011(-)$1	248	43	46	8.9999
GGA	chr2:110373027-110373251(+)$1	224	48	51	8.9999
GGA	chr20:52198201-52198442(-)$1	241	18	21	8.9999
GGA	chr20:61528086-61528316(-)$1	230	222	225	8.9999
GGA	chr6:158516591-158516832(+)$1	241	69	72	8.9999
GGA	chr20:44518934-44519150(-)$1	216	35	38	8.9999
GGA	chr1:202702641-202702918(-)$1	277	2	5	8.9999
GGA	chr20:17950441-17950735(+)$1	294	1	4	8.9999
GGA	chr20:31022348-31022605(+)$1	257	1	4	8.9999
GGA	chr11:57569122-57569392(+)$1	270	17	20	8.9999
GGA	chr1:234745021-234745290(-)$1	269	46	49	8.9999
GGA	chr12:49420775-49421051(-)$1	276	5	8	8.9999
GGA	chr7:75051214-75051454(-)$1	240	17	20	8.9999
GGA	chr5:172195946-172196240(-)$1	294	122	125	8.9999
GGA	chr8:121823799-121824101(-)$1	302	12	15	8.9999
GGA	chr14:21702081-21702328(-)$1	247	37	40	8.9999
GGA	chr4:159091634-159091894(-)$1	260	50	53	8.9999
GGA	chr10:133784016-133784291(-)$1	275	0	3	8.9999
GGA	chr6:33372993-33373239(+)$1	246	19	22	8.9999
GGA	chr3:196673969-196674227(-)$1	258	52	55	8.9999
GGA	chr19:46387295-46387545(-)$1	250	33	36	8.9999
GGA	chr2:71351236-71351479(-)$1	243	12	15	8.9999
GGA	chr10:88854281-88854487(-)$1	206	63	66	8.9999
GGA	chr20:48808458-48808739(+)$1	281	2	5	8.9999
GGA	chr6:11185564-11185872(-)$1	308	12	15	8.9999
GGA	chr17:75398035-75398344(+)$1	309	39	42	8.9999
GGA	chr20:31021080-31021296(+)$1	216	51	54	8.9999
GGA	chr2:208632128-208632381(-)$1	253	60	63	8.9999
GGA	chr13:111545244-111545487(-)$1	243	46	49	8.9999
GGA	chr8:23291742-23292001(-)$1	259	33	36	8.9999
GGA	chr1:201845103-201845368(+)$1	265	84	87	8.9999
GGA	chr22:50728433-50728673(-)$1	240	64	67	8.9999
GGA	chr17:70118721-70118967(+)$1	246	0	3	8.9999
GGA	chr19:2226190-2226455(+)$1	265	5	8	8.9999
GGA	chr1:154987222-154987498(+)$1	276	29	32	8.9999
GGA	chr18:3457454-3457707(+)$1	253	33	36	8.9999
GGA	chr13:52548978-52549230(-)$1	252	18	21	8.9999
GGA	chr2:74709409-74709646(-)$1	237	158	161	8.9999
GGA	chr7:148920803-148921057(+)$1	254	37	40	8.9999
GGA	chr6:1312887-1313135(+)$1	248	11	14	8.9999
GGA	chr17:1945862-1946121(+)$1	259	49	52	8.9999
GGA	chr10:43882909-43883170(-)$1	261	21	24	8.9999
GGA	chr8:8235194-8235430(-)$1	236	29	32	8.9999
GGA	chr1:16475151-16475369(-)$1	218	21	24	8.9999
GGA	chr2:171573341-171573554(+)$1	213	110	113	8.9999
GGA	chr2:20647705-20647940(+)$1	235	12	15	8.9999
GGA	chr4:39436012-39436261(+)$1	249	19	22	8.9999
GGA	chr17:14205200-14205444(+)$1	244	32	35	8.9999

#otherMatches

#Struct PSSM
ee[	chr21:34922690-34922947(+)$1	257	22	25	8.9999
GGG	chr20:31021569-31021796(+)$1	227	2	5	8.9999
$$$	chr22:38061593-38061873(+)$1	280	6	9	8.9999
fff	chr6:11190990-11191234(-)$1	244	51	54	8.9999
cc"	chr14:23567086-23567333(+)$1	247	2	5	8.9999
BB:	chr17:53345122-53345448(+)$1	326	11	14	8.9999
CCK	chr6:139694551-139694771(-)$1	220	8	11	8.9999
ggg	chr6:3456391-3456653(-)$1	262	3	6	8.9999
ee:	chr3:5025186-5025446(+)$1	260	201	204	8.9999
eee	chr6:88411155-88411418(-)$1	263	25	28	8.9999
ddd	chr17:74308922-74309170(-)$1	248	72	75	8.9999
GG:	chr6:36651932-36652228(+)$1	296	20	23	8.9999
eeq	chr16:30976162-30976428(+)$1	266	18	21	8.9999
bb!	chr1:110884396-110884610(+)$1	214	84	87	8.9999
ccc	chr6:31600408-31600632(+)$1	224	4	7	8.9999
enn	chr18:60191750-60191986(+)$1	236	116	119	8.9999
mmf	chr1:46751651-46751893(-)$1	242	163	166	8.9999
fff	chr9:140137368-140137622(+)$1	254	53	56	8.9999
ppp	chr17:74307481-74307738(-)$1	257	22	25	8.9999
qqq	chr2:26257455-26257715(+)$1	260	69	72	8.9999
d!!	chr2:97482252-97482593(+)$1	341	4	7	8.9999
B::	chr14:31364548-31364791(-)$1	243	29	32	8.9999
EE:	chr8:8234139-8234363(-)$1	224	16	19	8.9999
]a]	chr20:54978493-54978753(+)$1	260	44	47	8.9999
GGM	chr16:70697589-70697832(-)$1	243	33	36	8.9999
fff	chr17:27076021-27076262(+)$1	241	30	33	8.9999
eee	chr16:30566992-30567237(-)$1	245	37	40	8.9999
fff	chr7:2577805-2578156(-)$1	351	168	171	8.9999
ggg	chr13:52549092-52549388(-)$1	296	25	28	8.9999
eee	chr21:34924876-34925181(+)$1	305	149	152	8.9999
hhh	chr7:5427614-5427903(-)$1	289	59	62	8.9999
eee	chr7:150068798-150069022(+)$1	224	47	50	8.9999
ea]	chr12:104336876-104337094(+)$1	218	46	49	8.9999
DDD	chr2:138721965-138722290(+)$1	325	16	19	8.9999
BBN	chr18:60241777-60242009(+)$1	232	0	3	8.9999
c!!	chr1:8073914-8074125(-)$1	211	79	82	8.9999
ggg	chr2:42557153-42557453(+)$1	300	16	19	8.9999
ddd	chr18:60242619-60242867(+)$1	248	1	4	8.9999
bb:	chr6:114178776-114179090(+)$1	314	111	114	8.9999
FFc	chr18:30350091-30350333(+)$1	242	13	16	8.9999
ccc	chr14:31598439-31598695(-)$1	256	44	47	8.9999
FF:	chr6:139694652-139694901(-)$1	249	46	49	8.9999
###	chr20:61542636-61542853(-)$1	217	11	14	8.9999
doo	chr1:211751524-211751777(-)$1	253	10	13	8.9999
fff	chr9:140137211-140137440(+)$1	229	210	213	8.9999
fff	chr20:58514115-58514377(-)$1	262	86	89	8.9999
bb:	chr9:124534837-124535085(+)$1	248	93	96	8.9999
C::	chr21:34921687-34921917(+)$1	230	12	15	8.9999
III	chr18:21136296-21136593(-)$1	297	15	18	8.9999
EEK	chr6:139694571-139694811(-)$1	240	48	51	8.9999
ddd	chr18:60242432-60242680(+)$1	248	83	86	8.9999
ggg	chr9:14775763-14776011(-)$1	248	43	46	8.9999
DDB	chr2:110373027-110373251(+)$1	224	48	51	8.9999
sss	chr20:52198201-52198442(-)$1	241	18	21	8.9999
D::	chr20:61528086-61528316(-)$1	230	222	225	8.9999
CC{	chr6:158516591-158516832(+)$1	241	69	72	8.9999
:::	chr20:44518934-44519150(-)$1	216	35	38	8.9999
ddd	chr1:202702641-202702918(-)$1	277	2	5	8.9999
:::	chr20:17950441-17950735(+)$1	294	1	4	8.9999
eee	chr20:31022348-31022605(+)$1	257	1	4	8.9999
eee	chr11:57569122-57569392(+)$1	270	17	20	8.9999
mbb	chr1:234745021-234745290(-)$1	269	46	49	8.9999
ccc	chr12:49420775-49421051(-)$1	276	5	8	8.9999
fff	chr7:75051214-75051454(-)$1	240	17	20	8.9999
eee	chr5:172195946-172196240(-)$1	294	122	125	8.9999
:::	chr8:121823799-121824101(-)$1	302	12	15	8.9999
eee	chr14:21702081-21702328(-)$1	247	37	40	8.9999
ddd	chr4:159091634-159091894(-)$1	260	50	53	8.9999
CCC	chr10:133784016-133784291(-)$1	275	0	3	8.9999
nnn	chr6:33372993-33373239(+)$1	246	19	22	8.9999
DDM	chr3:196673969-196674227(-)$1	258	52	55	8.9999
hh]	chr19:46387295-46387545(-)$1	250	33	36	8.9999
hhh	chr2:71351236-71351479(-)$1	243	12	15	8.9999
FFF	chr10:88854281-88854487(-)$1	206	63	66	8.9999
FFF	chr20:48808458-48808739(+)$1	281	2	5	8.9999
Ddd	chr6:11185564-11185872(-)$1	308	12	15	8.9999
gg:	chr17:75398035-75398344(+)$1	309	39	42	8.9999
ppp	chr20:31021080-31021296(+)$1	216	51	54	8.9999
ee]	chr2:208632128-208632381(-)$1	253	60	63	8.9999
fff	chr13:111545244-111545487(-)$1	243	46	49	8.9999
occ	chr8:23291742-23292001(-)$1	259	33	36	8.9999
ggg	chr1:201845103-201845368(+)$1	265	84	87	8.9999
eee	chr22:50728433-50728673(-)$1	240	64	67	8.9999
ggg	chr17:70118721-70118967(+)$1	246	0	3	8.9999
eep	chr19:2226190-2226455(+)$1	265	5	8	8.9999
CKK	chr1:154987222-154987498(+)$1	276	29	32	8.9999
ggg	chr18:3457454-3457707(+)$1	253	33	36	8.9999
%%%	chr13:52548978-52549230(-)$1	252	18	21	8.9999
:::	chr2:74709409-74709646(-)$1	237	158	161	8.9999
ggg	chr7:148920803-148921057(+)$1	254	37	40	8.9999
&&&	chr6:1312887-1313135(+)$1	248	11	14	8.9999
bbd	chr17:1945862-1946121(+)$1	259	49	52	8.9999
c[d	chr10:43882909-43883170(-)$1	261	21	24	8.9999
dd:	chr8:8235194-8235430(-)$1	236	29	32	8.9999
eee	chr1:16475151-16475369(-)$1	218	21	24	8.9999
uuu	chr2:171573341-171573554(+)$1	213	110	113	8.9999
BB{	chr2:20647705-20647940(+)$1	235	12	15	8.9999
bb!	chr4:39436012-39436261(+)$1	249	19	22	8.9999
dbb	chr17:14205200-14205444(+)$1	244	32	35	8.9999

#DB
((.	chr21:34922690-34922947(+)$1	1	22	25	8.9999
(((	chr20:31021569-31021796(+)$1	1	2	5	8.9999
...	chr22:38061593-38061873(+)$1	1	6	9	8.9999
)))	chr6:11190990-11191234(-)$1	1	51	54	8.9999
((.	chr14:23567086-23567333(+)$1	1	2	5	8.9999
((.	chr17:53345122-53345448(+)$1	1	11	14	8.9999
((.	chr6:139694551-139694771(-)$1	1	8	11	8.9999
(((	chr6:3456391-3456653(-)$1	1	3	6	8.9999
)).	chr3:5025186-5025446(+)$1	1	201	204	8.9999
(((	chr6:88411155-88411418(-)$1	1	25	28	8.9999
)))	chr17:74308922-74309170(-)$1	1	72	75	8.9999
((.	chr6:36651932-36652228(+)$1	1	20	23	8.9999
((.	chr16:30976162-30976428(+)$1	1	18	21	8.9999
((.	chr1:110884396-110884610(+)$1	1	84	87	8.9999
(((	chr6:31600408-31600632(+)$1	1	4	7	8.9999
(..	chr18:60191750-60191986(+)$1	1	116	119	8.9999
..)	chr1:46751651-46751893(-)$1	1	163	166	8.9999
)))	chr9:140137368-140137622(+)$1	1	53	56	8.9999
...	chr17:74307481-74307738(-)$1	1	22	25	8.9999
...	chr2:26257455-26257715(+)$1	1	69	72	8.9999
(..	chr2:97482252-97482593(+)$1	1	4	7	8.9999
(..	chr14:31364548-31364791(-)$1	1	29	32	8.9999
((.	chr8:8234139-8234363(-)$1	1	16	19	8.9999
.).	chr20:54978493-54978753(+)$1	1	44	47	8.9999
((.	chr16:70697589-70697832(-)$1	1	33	36	8.9999
(((	chr17:27076021-27076262(+)$1	1	30	33	8.9999
(((	chr16:30566992-30567237(-)$1	1	37	40	8.9999
)))	chr7:2577805-2578156(-)$1	1	168	171	8.9999
(((	chr13:52549092-52549388(-)$1	1	25	28	8.9999
(((	chr21:34924876-34925181(+)$1	1	149	152	8.9999
(((	chr7:5427614-5427903(-)$1	1	59	62	8.9999
)))	chr7:150068798-150069022(+)$1	1	47	50	8.9999
)).	chr12:104336876-104337094(+)$1	1	46	49	8.9999
(((	chr2:138721965-138722290(+)$1	1	16	19	8.9999
((.	chr18:60241777-60242009(+)$1	1	0	3	8.9999
(..	chr1:8073914-8074125(-)$1	1	79	82	8.9999
)))	chr2:42557153-42557453(+)$1	1	16	19	8.9999
(((	chr18:60242619-60242867(+)$1	1	1	4	8.9999
)).	chr6:114178776-114179090(+)$1	1	111	114	8.9999
(((	chr18:30350091-30350333(+)$1	1	13	16	8.9999
(((	chr14:31598439-31598695(-)$1	1	44	47	8.9999
((.	chr6:139694652-139694901(-)$1	1	46	49	8.9999
...	chr20:61542636-61542853(-)$1	1	11	14	8.9999
(..	chr1:211751524-211751777(-)$1	1	10	13	8.9999
)))	chr9:140137211-140137440(+)$1	1	210	213	8.9999
(((	chr20:58514115-58514377(-)$1	1	86	89	8.9999
)).	chr9:124534837-124535085(+)$1	1	93	96	8.9999
(..	chr21:34921687-34921917(+)$1	1	12	15	8.9999
(((	chr18:21136296-21136593(-)$1	1	15	18	8.9999
((.	chr6:139694571-139694811(-)$1	1	48	51	8.9999
(((	chr18:60242432-60242680(+)$1	1	83	86	8.9999
)))	chr9:14775763-14776011(-)$1	1	43	46	8.9999
(((	chr2:110373027-110373251(+)$1	1	48	51	8.9999
...	chr20:52198201-52198442(-)$1	1	18	21	8.9999
)..	chr20:61528086-61528316(-)$1	1	222	225	8.9999
((.	chr6:158516591-158516832(+)$1	1	69	72	8.9999
...	chr20:44518934-44519150(-)$1	1	35	38	8.9999
(((	chr1:202702641-202702918(-)$1	1	2	5	8.9999
...	chr20:17950441-17950735(+)$1	1	1	4	8.9999
(((	chr20:31022348-31022605(+)$1	1	1	4	8.9999
(((	chr11:57569122-57569392(+)$1	1	17	20	8.9999
.))	chr1:234745021-234745290(-)$1	1	46	49	8.9999
(((	chr12:49420775-49421051(-)$1	1	5	8	8.9999
)))	chr7:75051214-75051454(-)$1	1	17	20	8.9999
)))	chr5:172195946-172196240(-)$1	1	122	125	8.9999
...	chr8:121823799-121824101(-)$1	1	12	15	8.9999
)))	chr14:21702081-21702328(-)$1	1	37	40	8.9999
)))	chr4:159091634-159091894(-)$1	1	50	53	8.9999
(((	chr10:133784016-133784291(-)$1	1	0	3	8.9999
...	chr6:33372993-33373239(+)$1	1	19	22	8.9999
((.	chr3:196673969-196674227(-)$1	1	52	55	8.9999
)).	chr19:46387295-46387545(-)$1	1	33	36	8.9999
(((	chr2:71351236-71351479(-)$1	1	12	15	8.9999
(((	chr10:88854281-88854487(-)$1	1	63	66	8.9999
(((	chr20:48808458-48808739(+)$1	1	2	5	8.9999
(((	chr6:11185564-11185872(-)$1	1	12	15	8.9999
)).	chr17:75398035-75398344(+)$1	1	39	42	8.9999
...	chr20:31021080-31021296(+)$1	1	51	54	8.9999
)).	chr2:208632128-208632381(-)$1	1	60	63	8.9999
)))	chr13:111545244-111545487(-)$1	1	46	49	8.9999
.))	chr8:23291742-23292001(-)$1	1	33	36	8.9999
(((	chr1:201845103-201845368(+)$1	1	84	87	8.9999
)))	chr22:50728433-50728673(-)$1	1	64	67	8.9999
(((	chr17:70118721-70118967(+)$1	1	0	3	8.9999
((.	chr19:2226190-2226455(+)$1	1	5	8	8.9999
(..	chr1:154987222-154987498(+)$1	1	29	32	8.9999
(((	chr18:3457454-3457707(+)$1	1	33	36	8.9999
...	chr13:52548978-52549230(-)$1	1	18	21	8.9999
...	chr2:74709409-74709646(-)$1	1	158	161	8.9999
)))	chr7:148920803-148921057(+)$1	1	37	40	8.9999
...	chr6:1312887-1313135(+)$1	1	11	14	8.9999
)))	chr17:1945862-1946121(+)$1	1	49	52	8.9999
(.(	chr10:43882909-43883170(-)$1	1	21	24	8.9999
)).	chr8:8235194-8235430(-)$1	1	29	32	8.9999
)))	chr1:16475151-16475369(-)$1	1	21	24	8.9999
...	chr2:171573341-171573554(+)$1	1	110	113	8.9999
((.	chr2:20647705-20647940(+)$1	1	12	15	8.9999
((.	chr4:39436012-39436261(+)$1	1	19	22	8.9999
)))	chr17:14205200-14205444(+)$1	1	32	35	8.9999

#PSSM
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	
A : 0.99	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_transcript_m2_run2.nuc.txt

#NT
CCUGG	chr22:20111807-20112056(+)$1	249	206	211	15.0000
CCUGG	chr5:21482187-21482441(+)$1	254	216	221	15.0000
CCUGG	chr10:3170443-3170701(+)$1	258	232	237	15.0000
CCUGG	chr22:50050802-50051039(-)$1	237	113	118	15.0000
CCUGG	chr17:73889504-73889744(-)$1	240	130	135	15.0000
CCUGG	chr21:45163798-45164072(+)$1	274	95	100	15.0000
ccUGG	chr12:62951080-62951342(+)$1	262	193	198	15.0000
CCUGG	chr19:34883430-34883676(+)$1	246	29	34	15.0000
CCUGG	chr1:1689098-1689365(-)$1	267	129	134	15.0000
CCUGG	chr22:49925227-49925481(-)$1	254	196	201	15.0000
CCUGG	chr20:62513241-62513507(+)$1	266	185	190	15.0000
ccugg	chr22:19433768-19434071(-)$1	303	8	13	15.0000
CCUGG	chr19:18532011-18532282(+)$1	271	177	182	15.0000
CCUGG	chr16:31198877-31199148(+)$1	271	202	207	15.0000
CCUGG	chr7:157036237-157036566(+)$1	329	19	24	15.0000
CCUGG	chr1:2325730-2325966(+)$1	236	40	45	15.0000
CCUGG	chr16:85663326-85663592(+)$1	266	106	111	15.0000
CCUGG	chr16:31197672-31197912(+)$1	240	60	65	15.0000
CCUGG	chr10:72471914-72472167(+)$1	253	58	63	15.0000
CCUGG	chr19:34881654-34881885(+)$1	231	50	55	15.0000
ccugg	chr16:89477796-89478073(-)$1	277	40	45	15.0000
CCUGG	chr21:45729208-45729492(+)$1	284	30	35	15.0000
CCUGG	chr2:236466573-236466848(+)$1	275	3	8	15.0000
CCUGG	chr5:21483123-21483379(+)$1	256	87	92	15.0000
CCUGG	chr19:34883557-34883830(+)$1	273	115	120	15.0000
CCUGG	chr17:80877731-80878007(+)$1	276	199	204	15.0000
CCUGG	chr12:123463994-123464266(+)$1	272	237	242	15.0000
CCUGG	chr2:236431066-236431331(+)$1	265	84	89	15.0000
CCUGG	chr19:1410753-1411048(+)$1	295	92	97	15.0000
ccugg	chr9:136149301-136149569(-)$1	268	193	198	15.0000
ccugg	chr16:23979651-23979931(+)$1	280	153	158	15.0000
CCUGG	chr3:195419071-195419383(+)$1	312	73	78	15.0000
ccugg	chr22:23558825-23559109(+)$1	284	263	268	15.0000
ccugg	chr22:19389445-19389717(-)$1	272	205	210	15.0000
ccugg	chr5:138635346-138635665(+)$1	319	260	265	15.0000
CCUGG	chr19:34882300-34882639(+)$1	339	160	165	15.0000
ccugg	chr19:3390803-3391073(+)$1	270	250	255	15.0000
CCUGG	chr11:65191190-65191417(+)$1	227	17	22	15.0000
ccugg	chr21:45337953-45338275(+)$1	322	257	262	15.0000
CCUGG	chr20:33508530-33508861(+)$1	331	28	33	15.0000
CCUGG	chr16:31198206-31198452(+)$1	246	105	110	15.0000
CCUGG	chrX:13333166-13333392(+)$1	226	193	198	15.0000
CCUGG	chr5:34192094-34192340(-)$1	246	57	62	15.0000
CCUGG	chr22:49980981-49981245(-)$1	264	58	63	15.0000
CCUGG	chr11:587577-587847(+)$1	270	2	7	15.0000
CCUGG	chr16:31199028-31199274(+)$1	246	51	56	15.0000

#otherMatches

#Struct PSSM
ccnnn	chr4:10113041-10113333(-)$1	292	148	153	15.0000
ccc55	chr22:20111807-20112056(+)$1	249	206	211	15.0000
ccc22	chr5:21482187-21482441(+)$1	254	216	221	15.0000
GGGGG	chr10:3170443-3170701(+)$1	258	232	237	15.0000
eeee!	chr22:50050802-50051039(-)$1	237	113	118	15.0000
NNNGG	chr17:73889504-73889744(-)$1	240	130	135	15.0000
dddd:	chr21:45163798-45164072(+)$1	274	95	100	15.0000
3gggg	chr12:62951080-62951342(+)$1	262	193	198	15.0000
cbbbb	chr19:34883430-34883676(+)$1	246	29	34	15.0000
ddddf	chr1:1689098-1689365(-)$1	267	129	134	15.0000
HHHZZ	chr22:49925227-49925481(-)$1	254	196	201	15.0000
b22cc	chr20:62513241-62513507(+)$1	266	185	190	15.0000
CCC{E	chr22:19433768-19434071(-)$1	303	8	13	15.0000
ddddd	chr19:18532011-18532282(+)$1	271	177	182	15.0000
=====	chr16:31198877-31199148(+)$1	271	202	207	15.0000
eee]b	chr7:157036237-157036566(+)$1	329	19	24	15.0000
ceeee	chr1:2325730-2325966(+)$1	236	40	45	15.0000
ccc]d	chr16:85663326-85663592(+)$1	266	106	111	15.0000
fffff	chr16:31197672-31197912(+)$1	240	60	65	15.0000
eeeee	chr10:72471914-72472167(+)$1	253	58	63	15.0000
eeeeb	chr19:34881654-34881885(+)$1	231	50	55	15.0000
eeeee	chr16:89477796-89478073(-)$1	277	40	45	15.0000
ddd""	chr21:45729208-45729492(+)$1	284	30	35	15.0000
FFF::	chr2:236466573-236466848(+)$1	275	3	8	15.0000
dddd[	chr5:21483123-21483379(+)$1	256	87	92	15.0000
ff]ff	chr19:34883557-34883830(+)$1	273	115	120	15.0000
GGGGG	chr17:80877731-80878007(+)$1	276	199	204	15.0000
iiioo	chr12:123463994-123464266(+)$1	272	237	242	15.0000
DDDOO	chr2:236431066-236431331(+)$1	265	84	89	15.0000
dddd:	chr19:1410753-1411048(+)$1	295	92	97	15.0000
ggggn	chr9:136149301-136149569(-)$1	268	193	198	15.0000
eeee2	chr16:23979651-23979931(+)$1	280	153	158	15.0000
qccc]	chr3:195419071-195419383(+)$1	312	73	78	15.0000
ddd22	chr22:23558825-23559109(+)$1	284	263	268	15.0000
ffffs	chr22:19389445-19389717(-)$1	272	205	210	15.0000
bccc]	chr5:138635346-138635665(+)$1	319	260	265	15.0000
ee[bb	chr19:34882300-34882639(+)$1	339	160	165	15.0000
GGG}D	chr19:3390803-3391073(+)$1	270	250	255	15.0000
GG:::	chr11:65191190-65191417(+)$1	227	17	22	15.0000
glllg	chr21:45337953-45338275(+)$1	322	257	262	15.0000
eeccc	chr20:33508530-33508861(+)$1	331	28	33	15.0000
DD{FF	chr16:31198206-31198452(+)$1	246	105	110	15.0000
llfff	chrX:13333166-13333392(+)$1	226	193	198	15.0000
====[	chr5:34192094-34192340(-)$1	246	57	62	15.0000
ffff!	chr22:49980981-49981245(-)$1	264	58	63	15.0000
CC{GG	chr11:587577-587847(+)$1	270	2	7	15.0000
iiiii	chr16:31199028-31199274(+)$1	246	51	56	15.0000

#DB
((...	chr4:10113041-10113333(-)$1	1	148	153	15.0000
)))..	chr22:20111807-20112056(+)$1	1	206	211	15.0000
)))..	chr5:21482187-21482441(+)$1	1	216	221	15.0000
)))))	chr10:3170443-3170701(+)$1	1	232	237	15.0000
((((.	chr22:50050802-50051039(-)$1	1	113	118	15.0000
...((	chr17:73889504-73889744(-)$1	1	130	135	15.0000
)))).	chr21:45163798-45164072(+)$1	1	95	100	15.0000
.))))	chr12:62951080-62951342(+)$1	1	193	198	15.0000
(((((	chr19:34883430-34883676(+)$1	1	29	34	15.0000
))))(	chr1:1689098-1689365(-)$1	1	129	134	15.0000
)))..	chr22:49925227-49925481(-)$1	1	196	201	15.0000
)..))	chr20:62513241-62513507(+)$1	1	185	190	15.0000
(((.(	chr22:19433768-19434071(-)$1	1	8	13	15.0000
))))(	chr19:18532011-18532282(+)$1	1	177	182	15.0000
(((((	chr16:31198877-31199148(+)$1	1	202	207	15.0000
))).)	chr7:157036237-157036566(+)$1	1	19	24	15.0000
(((((	chr1:2325730-2325966(+)$1	1	40	45	15.0000
))).)	chr16:85663326-85663592(+)$1	1	106	111	15.0000
(((((	chr16:31197672-31197912(+)$1	1	60	65	15.0000
)))))	chr10:72471914-72472167(+)$1	1	58	63	15.0000
)))))	chr19:34881654-34881885(+)$1	1	50	55	15.0000
)))))	chr16:89477796-89478073(-)$1	1	40	45	15.0000
(((..	chr21:45729208-45729492(+)$1	1	30	35	15.0000
(((..	chr2:236466573-236466848(+)$1	1	3	8	15.0000
((((.	chr5:21483123-21483379(+)$1	1	87	92	15.0000
)).))	chr19:34883557-34883830(+)$1	1	115	120	15.0000
)))))	chr17:80877731-80878007(+)$1	1	199	204	15.0000
(((..	chr12:123463994-123464266(+)$1	1	237	242	15.0000
(((..	chr2:236431066-236431331(+)$1	1	84	89	15.0000
)))).	chr19:1410753-1411048(+)$1	1	92	97	15.0000
((((.	chr9:136149301-136149569(-)$1	1	193	198	15.0000
)))).	chr16:23979651-23979931(+)$1	1	153	158	15.0000
.))).	chr3:195419071-195419383(+)$1	1	73	78	15.0000
)))..	chr22:23558825-23559109(+)$1	1	263	268	15.0000
((((.	chr22:19389445-19389717(-)$1	1	205	210	15.0000
)))).	chr5:138635346-138635665(+)$1	1	260	265	15.0000
((.((	chr19:34882300-34882639(+)$1	1	160	165	15.0000
))).)	chr19:3390803-3391073(+)$1	1	250	255	15.0000
((...	chr11:65191190-65191417(+)$1	1	17	22	15.0000
(...)	chr21:45337953-45338275(+)$1	1	257	262	15.0000
))(((	chr20:33508530-33508861(+)$1	1	28	33	15.0000
((.((	chr16:31198206-31198452(+)$1	1	105	110	15.0000
..)))	chrX:13333166-13333392(+)$1	1	193	198	15.0000
((((.	chr5:34192094-34192340(-)$1	1	57	62	15.0000
((((.	chr22:49980981-49981245(-)$1	1	58	63	15.0000
((.((	chr11:587577-587847(+)$1	1	2	7	15.0000
(((((	chr16:31199028-31199274(+)$1	1	51	56	15.0000

#PSSM
C : 0.78	c : 0.21	
C : 0.78	c : 0.21	
U : 0.80	u : 0.19	
G : 0.80	g : 0.19	
G : 0.80	g : 0.19	

#score	705.0000000000001
#seq	47
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_CDS_m3_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
ggddddmmmmdddd22gggggggBBPPPPPPPGGGGGGGLLLEEEEEKKCCC:::::::::::::::::eeeeeqqqqqqqqeeeee:CCCCCCCCC{CCC::bbmmmmbb::::eeeeennnnneeeeeddddnnnnndddd::ccc"""ffffffnnnnnffffffccc::bbeeeeemmmmeeeee]bb::::::::::ffffffnnnnnffffffCCC}CCC}CCC}CCC}CCCEEEEEZZZGGGGGGG?????BB:hhhhhhhh[bb[ccc[ddddrrrrrrrrrdddd]ccc]bb]hhhhh	chr17:5336262-5336578(-)$1	316	5	312	921.0000

#DB
((((((....))))..)))))))((.......(((((((...(((((..(((.................(((((........))))).(((((((((.(((..((....))....(((((.....)))))((((.....))))..(((...((((((.....)))))))))..(((((((....))))).))..........((((((.....))))))))).))).))).))).))))))))...))))))).....)).((((((((.((.(((.((((.........)))).))).)).)))))	chr17:5336262-5336578(-)$1	1	5	312	921.0000

#PSSM
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	

#score	921.0
#seq	1
#width	307
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_transcript_m3_run2.nuc.txt

#NT
GGCC	chr19:7709186-7709484(+)$1	298	138	142	12.0000
GGCC	chr22:50037839-50038092(-)$1	253	108	112	12.0000
GGCC	chr2:97548470-97548710(-)$1	240	6	10	12.0000
GGCC	chr5:142782920-142783230(-)$1	310	22	26	12.0000
GGCC	chr2:242707710-242707991(+)$1	281	8	12	12.0000
GGCC	chr7:76124991-76125306(+)$1	315	130	134	12.0000
GGCC	chr8:25315623-25315952(-)$1	329	10	14	12.0000
GGCC	chr19:3062263-3062521(-)$1	258	24	28	12.0000
GGCC	chr22:50015535-50015894(-)$1	359	119	123	12.0000
GGCC	chr16:85660234-85660503(+)$1	269	83	87	12.0000
ggCC	chr12:56716566-56716829(-)$1	263	94	98	12.0000
GGCC	chr22:50040965-50041212(-)$1	247	200	204	12.0000
GGCC	chr22:49845233-49845488(-)$1	255	137	141	12.0000
GGCC	chrX:39954230-39954524(-)$1	294	166	170	12.0000
ggcc	chr22:38054706-38055049(+)$1	343	62	66	12.0000
GGCC	chr8:15397783-15398069(+)$1	286	9	13	12.0000
GGCC	chr11:205852-206146(-)$1	294	1	5	12.0000
GGCC	chr16:85645406-85645653(+)$1	247	211	215	12.0000
GGCC	chr5:137688347-137688603(+)$1	256	33	37	12.0000
GGCC	chr19:940058-940296(+)$1	238	92	96	12.0000
GGCC	chr4:83294837-83295165(-)$1	328	24	28	12.0000
GGCC	chr19:4034902-4035307(+)$1	405	46	50	12.0000
GGCC	chr1:999792-1000075(+)$1	283	14	18	12.0000
GGCC	chr16:447330-447630(+)$1	300	43	47	12.0000
GGCC	chr3:195635820-195636063(-)$1	243	16	20	12.0000
GGCC	chr17:43225892-43226156(+)$1	264	133	137	12.0000
GGCC	chr16:85648076-85648325(+)$1	249	23	27	12.0000
GGCC	chr21:46854807-46855047(+)$1	240	9	13	12.0000
GGCC	chr11:62368812-62369055(-)$1	243	11	15	12.0000
GGCC	chr22:20110913-20111210(+)$1	297	251	255	12.0000
ggcc	chr11:65739156-65739409(+)$1	253	136	140	12.0000
GGCC	chr1:1208945-1209221(-)$1	276	4	8	12.0000
GGCC	chr20:30539573-30539876(-)$1	303	205	209	12.0000
GGCC	chr1:205718982-205719196(-)$1	214	102	106	12.0000
ggcc	chr6:149638909-149639174(+)$1	265	27	31	12.0000
GGCC	chr3:160283039-160283342(-)$1	303	42	46	12.0000
GGCC	chr16:85648125-85648412(+)$1	287	67	71	12.0000
GGCC	chr19:1147642-1147881(-)$1	239	91	95	12.0000
GGCC	chr5:60458049-60458329(-)$1	280	21	25	12.0000
GGCC	chr16:11036097-11036387(-)$1	290	20	24	12.0000
GGCC	chr21:46841100-46841342(+)$1	242	11	15	12.0000
GGCC	chr1:173793756-173794015(+)$1	259	151	155	12.0000
GGCC	chr16:66586429-66586752(+)$1	323	243	247	12.0000
gGCC	chr20:60735377-60735612(+)$1	235	99	103	12.0000
GGCC	chr16:88589009-88589283(+)$1	274	92	96	12.0000
GGCC	chr19:13261893-13262168(+)$1	275	57	61	12.0000
ggcc	chr2:55234758-55234997(-)$1	239	186	190	12.0000
GGCC	chr2:145273639-145273887(-)$1	248	237	241	12.0000
GGCC	chr17:42277150-42277443(-)$1	293	5	9	12.0000
GGCC	chr12:6602178-6602461(-)$1	283	49	53	12.0000
GGCC	chr21:47733628-47733924(-)$1	296	76	80	12.0000
GGCC	chr19:4456703-4456982(-)$1	279	12	16	12.0000
GGCC	chr16:57279073-57279391(+)$1	318	8	12	12.0000
GGCC	chr16:88827965-88828255(-)$1	290	22	26	12.0000
GGCC	chr19:1408174-1408476(+)$1	302	28	32	12.0000
GGCC	chr17:46128235-46128530(+)$1	295	52	56	12.0000
GGCC	chr22:50035126-50035391(-)$1	265	90	94	12.0000
GGCC	chr12:58145880-58146155(-)$1	275	53	57	12.0000
GGCC	chr19:2236052-2236281(-)$1	229	6	10	12.0000
GGCC	chr17:61851499-61851767(+)$1	268	54	58	12.0000
GGCC	chr21:46861921-46862195(+)$1	274	70	74	12.0000
GGCC	chr1:16199698-16199952(+)$1	254	4	8	12.0000
GGCC	chr2:20550364-20550590(-)$1	226	218	222	12.0000
GGCC	chr22:50018375-50018652(-)$1	277	25	29	12.0000
GGCC	chr21:46850458-46850735(+)$1	277	123	127	12.0000
GGCC	chrX:54835511-54835757(+)$1	246	207	211	12.0000
GGCC	chr5:176074553-176074803(+)$1	250	15	19	12.0000
ggcc	chr11:638841-639096(+)$1	255	62	66	12.0000
GGCC	chr15:40987394-40987708(+)$1	314	10	14	12.0000
GGCC	chr19:41770839-41771095(+)$1	256	14	18	12.0000
GGCC	chr9:139428624-139428863(-)$1	239	48	52	12.0000
GGCC	chr15:79170454-79170702(+)$1	248	124	128	12.0000
GGCC	chr14:50360162-50360445(+)$1	283	22	26	12.0000
GGCC	chr16:1422245-1422495(-)$1	250	7	11	12.0000
GGCC	chr2:28974736-28974996(+)$1	260	10	14	12.0000
ggcc	chr7:99036642-99036901(+)$1	259	38	42	12.0000
GGCC	chr19:8385657-8385891(-)$1	234	72	76	12.0000
GGCC	chr1:87380370-87380636(+)$1	266	123	127	12.0000
GGCC	chr3:17783869-17784117(-)$1	248	28	32	12.0000
ggcc	chr14:74180762-74181031(-)$1	269	16	20	12.0000
GGCC	chr21:46233814-46234120(-)$1	306	76	80	12.0000

#otherMatches

#Struct PSSM
fff[	chr7:23338931-23339323(+)$1	392	44	48	12.0000
d]cc	chr19:7709186-7709484(+)$1	298	138	142	12.0000
hhhh	chr22:50037839-50038092(-)$1	253	108	112	12.0000
DDDD	chr2:97548470-97548710(-)$1	240	6	10	12.0000
UHHH	chr5:142782920-142783230(-)$1	310	22	26	12.0000
JJJJ	chr2:242707710-242707991(+)$1	281	8	12	12.0000
{AAC	chr7:76124991-76125306(+)$1	315	130	134	12.0000
Dddd	chr8:25315623-25315952(-)$1	329	10	14	12.0000
{CCC	chr19:3062263-3062521(-)$1	258	24	28	12.0000
eeee	chr22:50015535-50015894(-)$1	359	119	123	12.0000
ffff	chr16:85660234-85660503(+)$1	269	83	87	12.0000
^bb2	chr12:56716566-56716829(-)$1	263	94	98	12.0000
iiii	chr22:50040965-50041212(-)$1	247	200	204	12.0000
g[cc	chr22:49845233-49845488(-)$1	255	137	141	12.0000
ddd:	chrX:39954230-39954524(-)$1	294	166	170	12.0000
ffff	chr22:38054706-38055049(+)$1	343	62	66	12.0000
KKBB	chr8:15397783-15398069(+)$1	286	9	13	12.0000
FFFF	chr11:205852-206146(-)$1	294	1	5	12.0000
}GGG	chr16:85645406-85645653(+)$1	247	211	215	12.0000
JJJJ	chr5:137688347-137688603(+)$1	256	33	37	12.0000
eeee	chr19:940058-940296(+)$1	238	92	96	12.0000
gggg	chr4:83294837-83295165(-)$1	328	24	28	12.0000
!!ee	chr19:4034902-4035307(+)$1	405	46	50	12.0000
eeee	chr1:999792-1000075(+)$1	283	14	18	12.0000
ccc4	chr16:447330-447630(+)$1	300	43	47	12.0000
##gg	chr3:195635820-195636063(-)$1	243	16	20	12.0000
mccc	chr17:43225892-43226156(+)$1	264	133	137	12.0000
KEEE	chr16:85648076-85648325(+)$1	249	23	27	12.0000
D{GG	chr21:46854807-46855047(+)$1	240	9	13	12.0000
HHHH	chr11:62368812-62369055(-)$1	243	11	15	12.0000
sssc	chr22:20110913-20111210(+)$1	297	251	255	12.0000
cccn	chr11:65739156-65739409(+)$1	253	136	140	12.0000
eeee	chr1:1208945-1209221(-)$1	276	4	8	12.0000
nccc	chr20:30539573-30539876(-)$1	303	205	209	12.0000
dddd	chr1:205718982-205719196(-)$1	214	102	106	12.0000
[eee	chr6:149638909-149639174(+)$1	265	27	31	12.0000
eeee	chr3:160283039-160283342(-)$1	303	42	46	12.0000
eeee	chr16:85648125-85648412(+)$1	287	67	71	12.0000
:EEE	chr19:1147642-1147881(-)$1	239	91	95	12.0000
HHHH	chr5:60458049-60458329(-)$1	280	21	25	12.0000
ooee	chr16:11036097-11036387(-)$1	290	20	24	12.0000
EEEE	chr21:46841100-46841342(+)$1	242	11	15	12.0000
ffff	chr1:173793756-173794015(+)$1	259	151	155	12.0000
::bb	chr16:66586429-66586752(+)$1	323	243	247	12.0000
qqqe	chr20:60735377-60735612(+)$1	235	99	103	12.0000
d444	chr16:88589009-88589283(+)$1	274	92	96	12.0000
88ee	chr19:13261893-13262168(+)$1	275	57	61	12.0000
eddd	chr2:55234758-55234997(-)$1	239	186	190	12.0000
~~FF	chr2:145273639-145273887(-)$1	248	237	241	12.0000
EEEE	chr17:42277150-42277443(-)$1	293	5	9	12.0000
Gccc	chr12:6602178-6602461(-)$1	283	49	53	12.0000
ffff	chr21:47733628-47733924(-)$1	296	76	80	12.0000
!ggg	chr19:4456703-4456982(-)$1	279	12	16	12.0000
DD{E	chr16:57279073-57279391(+)$1	318	8	12	12.0000
a[ee	chr16:88827965-88828255(-)$1	290	22	26	12.0000
ffff	chr19:1408174-1408476(+)$1	302	28	32	12.0000
hhh"	chr17:46128235-46128530(+)$1	295	52	56	12.0000
iiig	chr22:50035126-50035391(-)$1	265	90	94	12.0000
HHHP	chr12:58145880-58146155(-)$1	275	53	57	12.0000
KKGG	chr19:2236052-2236281(-)$1	229	6	10	12.0000
:eee	chr17:61851499-61851767(+)$1	268	54	58	12.0000
ccco	chr21:46861921-46862195(+)$1	274	70	74	12.0000
dddd	chr1:16199698-16199952(+)$1	254	4	8	12.0000
}EEE	chr2:20550364-20550590(-)$1	226	218	222	12.0000
DDDD	chr22:50018375-50018652(-)$1	277	25	29	12.0000
ff[b	chr21:46850458-46850735(+)$1	277	123	127	12.0000
33bb	chrX:54835511-54835757(+)$1	246	207	211	12.0000
dddd	chr5:176074553-176074803(+)$1	250	15	19	12.0000
ee]h	chr11:638841-639096(+)$1	255	62	66	12.0000
cc!!	chr15:40987394-40987708(+)$1	314	10	14	12.0000
ffff	chr19:41770839-41771095(+)$1	256	14	18	12.0000
HHHH	chr9:139428624-139428863(-)$1	239	48	52	12.0000
dddd	chr15:79170454-79170702(+)$1	248	124	128	12.0000
HHHH	chr14:50360162-50360445(+)$1	283	22	26	12.0000
JJJJ	chr16:1422245-1422495(-)$1	250	7	11	12.0000
GGGM	chr2:28974736-28974996(+)$1	260	10	14	12.0000
EE:f	chr7:99036642-99036901(+)$1	259	38	42	12.0000
f+++	chr19:8385657-8385891(-)$1	234	72	76	12.0000
JJJ{	chr1:87380370-87380636(+)$1	266	123	127	12.0000
hhhl	chr3:17783869-17784117(-)$1	248	28	32	12.0000
JJJJ	chr14:74180762-74181031(-)$1	269	16	20	12.0000
[eee	chr21:46233814-46234120(-)$1	306	76	80	12.0000

#DB
(((.	chr7:23338931-23339323(+)$1	1	44	48	12.0000
).))	chr19:7709186-7709484(+)$1	1	138	142	12.0000
((((	chr22:50037839-50038092(-)$1	1	108	112	12.0000
((((	chr2:97548470-97548710(-)$1	1	6	10	12.0000
.(((	chr5:142782920-142783230(-)$1	1	22	26	12.0000
((((	chr2:242707710-242707991(+)$1	1	8	12	12.0000
.(((	chr7:76124991-76125306(+)$1	1	130	134	12.0000
((((	chr8:25315623-25315952(-)$1	1	10	14	12.0000
.(((	chr19:3062263-3062521(-)$1	1	24	28	12.0000
((((	chr22:50015535-50015894(-)$1	1	119	123	12.0000
((((	chr16:85660234-85660503(+)$1	1	83	87	12.0000
.)).	chr12:56716566-56716829(-)$1	1	94	98	12.0000
))))	chr22:50040965-50041212(-)$1	1	200	204	12.0000
(.((	chr22:49845233-49845488(-)$1	1	137	141	12.0000
))).	chrX:39954230-39954524(-)$1	1	166	170	12.0000
((((	chr22:38054706-38055049(+)$1	1	62	66	12.0000
..((	chr8:15397783-15398069(+)$1	1	9	13	12.0000
((((	chr11:205852-206146(-)$1	1	1	5	12.0000
.)))	chr16:85645406-85645653(+)$1	1	211	215	12.0000
((((	chr5:137688347-137688603(+)$1	1	33	37	12.0000
))))	chr19:940058-940296(+)$1	1	92	96	12.0000
((((	chr4:83294837-83295165(-)$1	1	24	28	12.0000
..((	chr19:4034902-4035307(+)$1	1	46	50	12.0000
((((	chr1:999792-1000075(+)$1	1	14	18	12.0000
))).	chr16:447330-447630(+)$1	1	43	47	12.0000
..((	chr3:195635820-195636063(-)$1	1	16	20	12.0000
.)))	chr17:43225892-43226156(+)$1	1	133	137	12.0000
.(((	chr16:85648076-85648325(+)$1	1	23	27	12.0000
(.((	chr21:46854807-46855047(+)$1	1	9	13	12.0000
((((	chr11:62368812-62369055(-)$1	1	11	15	12.0000
...)	chr22:20110913-20111210(+)$1	1	251	255	12.0000
(((.	chr11:65739156-65739409(+)$1	1	136	140	12.0000
((((	chr1:1208945-1209221(-)$1	1	4	8	12.0000
.)))	chr20:30539573-30539876(-)$1	1	205	209	12.0000
((((	chr1:205718982-205719196(-)$1	1	102	106	12.0000
.(((	chr6:149638909-149639174(+)$1	1	27	31	12.0000
((((	chr3:160283039-160283342(-)$1	1	42	46	12.0000
((((	chr16:85648125-85648412(+)$1	1	67	71	12.0000
.(((	chr19:1147642-1147881(-)$1	1	91	95	12.0000
((((	chr5:60458049-60458329(-)$1	1	21	25	12.0000
..))	chr16:11036097-11036387(-)$1	1	20	24	12.0000
((((	chr21:46841100-46841342(+)$1	1	11	15	12.0000
((((	chr1:173793756-173794015(+)$1	1	151	155	12.0000
..((	chr16:66586429-66586752(+)$1	1	243	247	12.0000
...)	chr20:60735377-60735612(+)$1	1	99	103	12.0000
)...	chr16:88589009-88589283(+)$1	1	92	96	12.0000
..))	chr19:13261893-13262168(+)$1	1	57	61	12.0000
))))	chr2:55234758-55234997(-)$1	1	186	190	12.0000
..))	chr2:145273639-145273887(-)$1	1	237	241	12.0000
((((	chr17:42277150-42277443(-)$1	1	5	9	12.0000
((((	chr12:6602178-6602461(-)$1	1	49	53	12.0000
((((	chr21:47733628-47733924(-)$1	1	76	80	12.0000
.(((	chr19:4456703-4456982(-)$1	1	12	16	12.0000
((.(	chr16:57279073-57279391(+)$1	1	8	12	12.0000
(.((	chr16:88827965-88828255(-)$1	1	22	26	12.0000
))))	chr19:1408174-1408476(+)$1	1	28	32	12.0000
(((.	chr17:46128235-46128530(+)$1	1	52	56	12.0000
((((	chr22:50035126-50035391(-)$1	1	90	94	12.0000
(((.	chr12:58145880-58146155(-)$1	1	53	57	12.0000
..((	chr19:2236052-2236281(-)$1	1	6	10	12.0000
.(((	chr17:61851499-61851767(+)$1	1	54	58	12.0000
(((.	chr21:46861921-46862195(+)$1	1	70	74	12.0000
((((	chr1:16199698-16199952(+)$1	1	4	8	12.0000
.)))	chr2:20550364-20550590(-)$1	1	218	222	12.0000
((((	chr22:50018375-50018652(-)$1	1	25	29	12.0000
((.(	chr21:46850458-46850735(+)$1	1	123	127	12.0000
..))	chrX:54835511-54835757(+)$1	1	207	211	12.0000
((((	chr5:176074553-176074803(+)$1	1	15	19	12.0000
)).)	chr11:638841-639096(+)$1	1	62	66	12.0000
((..	chr15:40987394-40987708(+)$1	1	10	14	12.0000
((((	chr19:41770839-41771095(+)$1	1	14	18	12.0000
((((	chr9:139428624-139428863(-)$1	1	48	52	12.0000
((((	chr15:79170454-79170702(+)$1	1	124	128	12.0000
((((	chr14:50360162-50360445(+)$1	1	22	26	12.0000
((((	chr16:1422245-1422495(-)$1	1	7	11	12.0000
(((.	chr2:28974736-28974996(+)$1	1	10	14	12.0000
((.(	chr7:99036642-99036901(+)$1	1	38	42	12.0000
(...	chr19:8385657-8385891(-)$1	1	72	76	12.0000
(((.	chr1:87380370-87380636(+)$1	1	123	127	12.0000
(((.	chr3:17783869-17784117(-)$1	1	28	32	12.0000
((((	chr14:74180762-74181031(-)$1	1	16	20	12.0000
.(((	chr21:46233814-46234120(-)$1	1	76	80	12.0000

#PSSM
G : 0.89	g : 0.10	
G : 0.90	g : 0.09	
C : 0.91	c : 0.08	
C : 0.91	c : 0.08	

#score	984.0000000000001
#seq	82
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_UTR_m1_run2.nuc.txt

#NT
GAGGCGGCGGCGGG	chr12:125051859-125052113(-)$1	254	116	130	23.0169
gcggcgggggcggc	chr2:10588154-10588409(-)$1	255	67	81	25.3050
AGGGCGGGGGAGGG	chr17:75211498-75211788(+)$1	290	118	132	20.7288
GAggcccgggcggc	chr1:215740736-215741034(+)$1	298	23	37	17.9322
GGGAGGGGGGCGCC	chr19:1205989-1206266(+)$1	277	139	153	17.5932
CAggccggggcggg	chr15:91445894-91446143(+)$1	249	30	44	18.1016
GGGGAUGGGGCGGA	chr19:16187748-16187998(+)$1	250	16	30	18.9491
GGGGCUCgggcggc	chrX:20284774-20285016(-)$1	242	181	195	20.7288
gggguggggguggg	chr19:50985390-50985643(+)$1	253	85	99	20.3050
GGGACCGGGGCGUC	chr19:1206237-1206504(+)$1	267	139	153	17.3389
ggcgcgggggcugg	chr3:33481515-33481766(-)$1	251	142	156	19.7966
GGGCCGGGGGCGGG	chr19:18530345-18530622(+)$1	277	181	195	24.2881
GGGGCGGGGGAGGG	chr7:5634090-5634325(+)$1	235	69	83	24.7966
ggggcgggcucggg	chr7:156931810-156932053(+)$1	243	7	21	21.1525
cgggcggggccgcg	chr5:149380426-149380694(+)$1	268	111	125	18.2711
gcggcgggggcggc	chr2:10588299-10588552(-)$1	253	210	224	25.3050
ggggccgcggcgug	chr11:70116720-70117070(+)$1	350	167	181	19.1186
ggggcaggggggac	chr19:41859577-41859817(-)$1	240	71	85	17.5084
GGGGAGGGCGCGGG	chr17:7477031-7477316(+)$1	285	98	112	21.1525
ggggcgggcucggg	chr7:156931672-156931985(+)$1	313	145	159	21.1525
GGGGCGCGCGCGCG	chr6:86352570-86352822(-)$1	252	117	131	18.7796
GAGGCGGUGGCGCA	chr11:64014049-64014310(-)$1	261	111	125	18.1864
ggggcgggggcggg	chr1:2126017-2126311(-)$1	294	55	69	28.6949
CGGGCGGUGGAGGG	chr9:139743356-139743618(+)$1	262	13	27	17.7627
agggcgggggcggg	chr3:20081790-20082102(+)$1	312	29	43	24.6271
GGGGCCGGAGCGGA	chr9:139702318-139702567(+)$1	249	127	141	19.6271
cgggcgggggcgcc	chr1:1284352-1284629(-)$1	277	39	53	22.3389
ggggcgggggccgg	chr2:159313482-159313804(+)$1	322	103	117	24.5423
GAggcggccgcggc	chr1:228675175-228675445(+)$1	270	242	256	19.6271
gcggcggcggcggc	chr12:116714992-116715235(-)$1	243	16	30	22.7627
GGGGUGCGGGCGCC	chr2:21266761-21267027(-)$1	266	60	74	17.9322
GGGGCGGGCGCGCA	chr5:154135174-154135469(+)$1	295	128	142	21.1525
ggggcgggggggag	chr1:27022570-27022816(+)$1	246	158	172	21.4915
GGGAGGGGGGCGCC	chr19:1205896-1206156(+)$1	260	232	246	17.5932
GAGGCGGGGGAGGC	chr5:154135053-154135313(+)$1	260	207	221	21.6610
gaggcggcggcggc	chr19:3062107-3062360(-)$1	253	36	50	23.0169
GGGGAGGGGGCGGG	chr11:64014144-64014445(-)$1	301	102	116	24.5423
GGGCCGGAGGCGAg	chr10:105727017-105727340(+)$1	323	226	240	17.8474
GGAGCGGGAGCGGC	chr19:14552003-14552274(+)$1	271	40	54	20.3898
GGAGCGGGAGCGGC	chr19:14551859-14552125(+)$1	266	184	198	20.3898
ggggcggggggcgc	chrX:152953467-152953738(+)$1	271	105	119	20.6440
ggggcggggccgcc	chr9:139560091-139560352(+)$1	261	62	76	22.0847
GGGGCGCGGGCCCG	chr7:100171074-100171355(-)$1	281	15	29	18.0169
Ugggccgcggcggc	chr11:65658089-65658331(+)$1	242	119	133	18.4406
GGGGCGGCGGCGGC	chr1:234745079-234745357(-)$1	278	52	66	26.1525
GCGGCGGCGGCGGA	chr19:18433727-18433995(-)$1	268	119	133	21.1525
GGGGCGCUGGCGGC	chr22:19711744-19712005(+)$1	261	66	80	21.4915
ggggcggggccggg	chr6:170123996-170124245(-)$1	249	95	109	24.6271
GAGGCGGCGGCGGG	chr11:62368813-62369055(-)$1	242	112	126	23.0169
GGGGCGGGGUCGGC	chr19:2270195-2270431(+)$1	236	30	44	24.5423
GGGGCGGAGGCACU	chr20:34252567-34252897(-)$1	330	150	164	16.7457
ggggcgggcccggc	chr17:80477550-80477817(+)$1	267	9	23	21.2372
CGGGCGGAGGCGGG	chr7:5569341-5569637(-)$1	296	102	116	21.7457
GGCGCAGCGGCGGC	chr20:62331382-62331632(-)$1	250	78	92	17.6779
GGGGCGGGGGCCGG	chr16:89006338-89006582(-)$1	244	227	241	24.5423
GUggcgggcgcgca	chr3:52567610-52567866(-)$1	256	27	41	17.4237
Ugggcggcggcggc	chrX:153686584-153686856(+)$1	272	42	56	22.0847
GCGGCGGGGGCGGU	chr5:179247988-179248234(+)$1	246	169	183	23.4406

#otherMatches

#Struct PSSM
fffffgggggggcc	chr16:29821450-29821669(+)$1	219	48	62	19.7966
cc]dddd]cccddd	chr12:125051859-125052113(-)$1	254	116	130	23.0169
bb[iiiiiiiiioo	chr2:10588154-10588409(-)$1	255	67	81	25.3050
iiiii!!bbooooo	chr17:75211498-75211788(+)$1	290	118	132	20.7288
::::EEEEE{EEEE	chr1:215740736-215741034(+)$1	298	23	37	17.9322
iii::::hhhhhhh	chr19:1205989-1206266(+)$1	277	139	153	17.5932
ddd!!iiiiiiiii	chr15:91445894-91446143(+)$1	249	30	44	18.1016
33bb:::FFFFFF{	chr19:16187748-16187998(+)$1	250	16	30	18.9491
mmccc333gggggg	chrX:20284774-20285016(-)$1	242	181	195	20.7288
FFFF{EEEEE{CCC	chr19:50985390-50985643(+)$1	253	85	99	20.3050
aeeeeehhhhhhhh	chr19:1206237-1206504(+)$1	267	139	153	17.3389
!!ffffff[eeeee	chr3:33481515-33481766(-)$1	251	142	156	19.7966
D}DDDD}DDDD}A}	chr19:18530345-18530622(+)$1	277	181	195	24.2881
=============f	chr7:5634090-5634325(+)$1	235	69	83	24.7966
==========[ccc	chr7:156931810-156932053(+)$1	243	7	21	21.1525
{FFFFFFddddmmm	chr5:149380426-149380694(+)$1	268	111	125	18.2711
hhhhhhhheeeee]	chr2:10588299-10588552(-)$1	253	210	224	25.3050
d]eeeee]ccc===	chr11:70116720-70117070(+)$1	350	167	181	19.1186
eeeee:ffffff!!	chr19:41859577-41859817(-)$1	240	71	85	17.5084
]ffffff]iiiiii	chr17:7477031-7477316(+)$1	285	98	112	21.1525
mmmmffffffdddd	chr7:156931672-156931985(+)$1	313	145	159	21.1525
a[cccccc[bb[bb	chr6:86352570-86352822(-)$1	252	117	131	18.7796
E}FFFFFF}BBCCC	chr11:64014049-64014310(-)$1	261	111	125	18.1864
HHHHHHHHCCCEEE	chr1:2126017-2126311(-)$1	294	55	69	28.6949
b[a[bb[a[eeeee	chr9:139743356-139743618(+)$1	262	13	27	17.7627
HH{IIIIIIIII{B	chr3:20081790-20082102(+)$1	312	29	43	24.6271
cc!!dddd[ggggg	chr9:139702318-139702567(+)$1	249	127	141	19.6271
boooooobb]hhhh	chr1:1284352-1284629(-)$1	277	39	53	22.3389
JJJJGGGGGGGEEE	chr2:159313482-159313804(+)$1	322	103	117	24.5423
22bb]ddddaccc]	chr1:228675175-228675445(+)$1	270	242	256	19.6271
A{JJJJJJJJJJ{A	chr12:116714992-116715235(-)$1	243	16	30	22.7627
GGGGGGAffffffe	chr2:21266761-21267027(-)$1	266	60	74	17.9322
OOOGGGGGGGBBMM	chr5:154135174-154135469(+)$1	295	128	142	21.1525
ee==========]e	chr1:27022570-27022816(+)$1	246	158	172	21.4915
iii:FFFFFFYYBB	chr19:1205896-1206156(+)$1	260	232	246	17.5932
iiiii[aooooooa	chr5:154135053-154135313(+)$1	260	207	221	21.6610
i!!ccc[ddddagg	chr19:3062107-3062360(-)$1	253	36	50	23.0169
ECCC{BB{GGGGGG	chr11:64014144-64014445(-)$1	301	102	116	24.5423
DDDDHHHHHHHH}C	chr10:105727017-105727340(+)$1	323	226	240	17.8474
b[ffffff[a[ccc	chr19:14552003-14552274(+)$1	271	40	54	20.3898
ddCCCDDDD}HHHH	chr19:14551859-14552125(+)$1	266	184	198	20.3898
==========[ass	chrX:152953467-152953738(+)$1	271	105	119	20.6440
hhhh]ffffff]bb	chr9:139560091-139560352(+)$1	261	62	76	22.0847
eddddmmmmddddb	chr7:100171074-100171355(-)$1	281	15	29	18.0169
]bb]eeeee=====	chr11:65658089-65658331(+)$1	242	119	133	18.4406
mma]eeeee]bbdd	chr1:234745079-234745357(-)$1	278	52	66	26.1525
:bb[dddd[bbmmm	chr19:18433727-18433995(-)$1	268	119	133	21.1525
hhhhhhh]ffffff	chr22:19711744-19712005(+)$1	261	66	80	21.4915
fffff]bb]bb333	chr6:170123996-170124245(-)$1	249	95	109	24.6271
mmmmdddd]ccc]c	chr11:62368813-62369055(-)$1	242	112	126	23.0169
VVVHHHHHHHH{AA	chr19:2270195-2270431(+)$1	236	30	44	24.5423
mmccc]bbccc]cc	chr20:34252567-34252897(-)$1	330	150	164	16.7457
========"""ggg	chr17:80477550-80477817(+)$1	267	9	23	21.2372
:DDDDFFFFFF{HH	chr7:5569341-5569637(-)$1	296	102	116	21.7457
c[cccmmmmccc]c	chr20:62331382-62331632(-)$1	250	78	92	17.6779
GGGG}CCCDDDD::	chr16:89006338-89006582(-)$1	244	227	241	24.5423
:::eeeee[dddd"	chr3:52567610-52567866(-)$1	256	27	41	17.4237
iii[bb[bbmmmmb	chrX:153686584-153686856(+)$1	272	42	56	22.0847
I{BB{IIIIIIIII	chr5:179247988-179248234(+)$1	246	169	183	23.4406

#DB
)))))(((((((((	chr16:29821450-29821669(+)$1	1	48	62	19.7966
)).)))).)))(((	chr12:125051859-125052113(-)$1	1	116	130	23.0169
((.(((((((((..	chr2:10588154-10588409(-)$1	1	67	81	25.3050
(((((..((.....	chr17:75211498-75211788(+)$1	1	118	132	20.7288
....(((((.((((	chr1:215740736-215741034(+)$1	1	23	37	17.9322
)))....(((((((	chr19:1205989-1206266(+)$1	1	139	153	17.5932
(((..(((((((((	chr15:91445894-91446143(+)$1	1	30	44	18.1016
..))...((((((.	chr19:16187748-16187998(+)$1	1	16	30	18.9491
..)))...))))))	chrX:20284774-20285016(-)$1	1	181	195	20.7288
((((.(((((.(((	chr19:50985390-50985643(+)$1	1	85	99	20.3050
))))))((((((((	chr19:1206237-1206504(+)$1	1	139	153	17.3389
..((((((.(((((	chr3:33481515-33481766(-)$1	1	142	156	19.7966
).)))).)))).).	chr19:18530345-18530622(+)$1	1	181	195	24.2881
)))))))))))))(	chr7:5634090-5634325(+)$1	1	69	83	24.7966
((((((((((.(((	chr7:156931810-156932053(+)$1	1	7	21	21.1525
.((((((((((...	chr5:149380426-149380694(+)$1	1	111	125	18.2711
))))))))))))).	chr2:10588299-10588552(-)$1	1	210	224	25.3050
).))))).))))))	chr11:70116720-70117070(+)$1	1	167	181	19.1186
))))).((((((..	chr19:41859577-41859817(-)$1	1	71	85	17.5084
.)))))).))))))	chr17:7477031-7477316(+)$1	1	98	112	21.1525
....))))))((((	chr7:156931672-156931985(+)$1	1	145	159	21.1525
(.((((((.((.((	chr6:86352570-86352822(-)$1	1	117	131	18.7796
).)))))).)))))	chr11:64014049-64014310(-)$1	1	111	125	18.1864
((((((((((((((	chr1:2126017-2126311(-)$1	1	55	69	28.6949
(.(.((.(.(((((	chr9:139743356-139743618(+)$1	1	13	27	17.7627
((.(((((((((.(	chr3:20081790-20082102(+)$1	1	29	43	24.6271
((..((((.(((((	chr9:139702318-139702567(+)$1	1	127	141	19.6271
(......)).))))	chr1:1284352-1284629(-)$1	1	39	53	22.3389
((((((((((((((	chr2:159313482-159313804(+)$1	1	103	117	24.5423
..)).)))))))).	chr1:228675175-228675445(+)$1	1	242	256	19.6271
(.((((((((((.(	chr12:116714992-116715235(-)$1	1	16	30	22.7627
((((((((((((((	chr2:21266761-21267027(-)$1	1	60	74	17.9322
...(((((((((..	chr5:154135174-154135469(+)$1	1	128	142	21.1525
)))))))))))).)	chr1:27022570-27022816(+)$1	1	158	172	21.4915
))).))))))..))	chr19:1205896-1206156(+)$1	1	232	246	17.5932
(((((.(......)	chr5:154135053-154135313(+)$1	1	207	221	21.6610
(..(((.(((((((	chr19:3062107-3062360(-)$1	1	36	50	23.0169
((((.((.((((((	chr11:64014144-64014445(-)$1	1	102	116	24.5423
)))))))))))).)	chr10:105727017-105727340(+)$1	1	226	240	17.8474
(.((((((.(.(((	chr19:14552003-14552274(+)$1	1	40	54	20.3898
))))))))).))))	chr19:14551859-14552125(+)$1	1	184	198	20.3898
((((((((((.(..	chrX:152953467-152953738(+)$1	1	105	119	20.6440
)))).)))))).))	chr9:139560091-139560352(+)$1	1	62	76	22.0847
)((((....))))(	chr7:100171074-100171355(-)$1	1	15	29	18.0169
.)).))))))))))	chr11:65658089-65658331(+)$1	1	119	133	18.4406
..).))))).))))	chr1:234745079-234745357(-)$1	1	52	66	26.1525
.((.((((.((...	chr19:18433727-18433995(-)$1	1	119	133	21.1525
))))))).))))))	chr22:19711744-19712005(+)$1	1	66	80	21.4915
))))).)).))...	chr6:170123996-170124245(-)$1	1	95	109	24.6271
....)))).))).)	chr11:62368813-62369055(-)$1	1	112	126	23.0169
...((((((((.((	chr19:2270195-2270431(+)$1	1	30	44	24.5423
..))).))))).))	chr20:34252567-34252897(-)$1	1	150	164	16.7457
((((((((...(((	chr17:80477550-80477817(+)$1	1	9	23	21.2372
.((((((((((.((	chr7:5569341-5569637(-)$1	1	102	116	21.7457
(.(((....))).)	chr20:62331382-62331632(-)$1	1	78	92	17.6779
)))).)))))))..	chr16:89006338-89006582(-)$1	1	227	241	24.5423
...(((((.((((.	chr3:52567610-52567866(-)$1	1	27	41	17.4237
(((.((.((....)	chrX:153686584-153686856(+)$1	1	42	56	22.0847
(.((.(((((((((	chr5:179247988-179248234(+)$1	1	169	183	23.4406

#PSSM
G : 0.55	g : 0.28	C : 0.05	c : 0.03	U : 0.03	A : 0.01	a : 0.01	
G : 0.45	g : 0.30	A : 0.11	c : 0.05	C : 0.03	a : 0.01	U : 0.01	
G : 0.50	g : 0.42	A : 0.03	c : 0.01	C : 0.01	
G : 0.47	g : 0.44	A : 0.05	C : 0.03	
C : 0.45	c : 0.42	A : 0.05	G : 0.03	u : 0.01	U : 0.01	
G : 0.47	g : 0.35	c : 0.06	U : 0.03	C : 0.03	a : 0.01	A : 0.01	
G : 0.47	g : 0.42	C : 0.08	c : 0.01	
g : 0.35	G : 0.33	c : 0.10	C : 0.08	A : 0.06	U : 0.05	
G : 0.44	g : 0.37	c : 0.08	C : 0.05	A : 0.05	
G : 0.52	g : 0.35	c : 0.06	u : 0.03	U : 0.01	
C : 0.45	c : 0.38	A : 0.06	g : 0.05	G : 0.01	u : 0.01	
G : 0.49	g : 0.40	c : 0.03	C : 0.03	u : 0.01	A : 0.01	
G : 0.37	g : 0.33	C : 0.13	c : 0.06	a : 0.03	U : 0.01	u : 0.01	A : 0.01	
c : 0.23	g : 0.22	G : 0.20	C : 0.18	A : 0.08	U : 0.05	a : 0.01	

#score	1240.3728813559321
#seq	59
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_CDS_m2_run2.nuc.txt

#NT
GGUAAGU	chr6:30557353-30557607(+)$1	254	143	150	15.6363
GGUGAGU	chr2:27448947-27449185(+)$1	238	93	100	18.2727
GGUGAGU	chr10:129921118-129921404(-)$1	286	49	56	18.2727
GGUGAGC	chr11:65632137-65632447(+)$1	310	148	155	15.5454
GGUGAGU	chr1:235403493-235403757(-)$1	264	129	136	18.2727
GGUGAGU	chr3:48580824-48581194(-)$1	370	181	188	18.2727
GGUGAGC	chr1:986905-987212(+)$1	307	119	126	15.5454
GGUAAGU	chr2:55883331-55883596(-)$1	265	156	163	15.6363
GGUGAGU	chr9:35733065-35733376(+)$1	311	74	81	18.2727
GGUAAGU	chr12:49663644-49663939(+)$1	295	114	121	15.6363
GGUGAGU	chr17:73831728-73831975(-)$1	247	39	46	18.2727
GGUGAGU	chr8:145619229-145619523(-)$1	294	195	202	18.2727
GGUGAGA	chr7:73100976-73101262(+)$1	286	84	91	15.1818
GGUGAGU	chr6:167365702-167366079(-)$1	377	103	110	18.2727
GGUGAGG	chr16:66785154-66785439(-)$1	285	51	58	15.2727
GGUAAGU	chr10:21971040-21971312(+)$1	272	145	152	15.6363
GGUGAGG	chr17:8053323-8053611(-)$1	288	83	90	15.2727
GGUGAGC	chr19:12826217-12826560(-)$1	343	36	43	15.5454
GGUGAGA	chr16:30779274-30779550(+)$1	276	61	68	15.1818
GGUGAGA	chr6:31726141-31726423(+)$1	282	80	87	15.1818
GGUGAGG	chr8:145737997-145738241(-)$1	244	11	18	15.2727
GGUAAGU	chr1:43830339-43830610(-)$1	271	11	18	15.6363
GGUGAGC	chr22:19164453-19164736(-)$1	283	103	110	15.5454
GGUGAGU	chr6:31937193-31937446(+)$1	253	3	10	18.2727
GGUGAGU	chr7:128480702-128481013(+)$1	311	25	32	18.2727
GGUGAGU	chr11:64674589-64674847(-)$1	258	120	127	18.2727
GGUGAGC	chr8:145667215-145667541(-)$1	326	121	128	15.5454
GGUAAGU	chr7:102963010-102963284(-)$1	274	134	141	15.6363
GGUAAGU	chr2:61725871-61726148(-)$1	277	148	155	15.6363
GGUGAGG	chr5:176794723-176795027(+)$1	304	102	109	15.2727
GGUGAGU	chr11:62651990-62652247(+)$1	257	6	13	18.2727
GGUGAGU	chr2:178081146-178081434(+)$1	288	173	180	18.2727
GGUAAGU	chr6:30675216-30675523(-)$1	307	180	187	15.6363
GGUGAGU	chr19:652180-652486(-)$1	306	253	260	18.2727
GGUGAGU	chr17:17722404-17722705(-)$1	301	162	169	18.2727
GGUGAGG	chr11:208995-209276(+)$1	281	21	28	15.2727
GGUAAGU	chr11:125499227-125499488(+)$1	261	127	134	15.6363
GGUAAGU	chr2:219140531-219140849(-)$1	318	100	107	15.6363
GGUGAGU	chr9:131763978-131764307(+)$1	329	276	283	18.2727
GGUGAGC	chr16:1816569-1816832(+)$1	263	118	125	15.5454
GGUAAGU	chr19:1271916-1272187(+)$1	271	133	140	15.6363
GGUAAGU	chr5:37327553-37327853(-)$1	300	122	129	15.6363
GGUGAGu	chr12:123812233-123812508(-)$1	275	69	76	18.2727
GGUGAGA	chr19:41209387-41209717(-)$1	330	97	104	15.1818
GGUGAGC	chr16:3076211-3076485(+)$1	274	77	84	15.5454
GGUGAGU	chr15:28421633-28421884(-)$1	251	51	58	18.2727
GGUGAGU	chr21:46915220-46915556(+)$1	336	125	132	18.2727
GGUGAGU	chr19:6416530-6416767(-)$1	237	18	25	18.2727
GGUGAGU	chr1:228333562-228333922(+)$1	360	205	212	18.2727
GGUGAGU	chr20:33894270-33894586(-)$1	316	117	124	18.2727
GGUGAGC	chr19:10369222-10369470(+)$1	248	138	145	15.5454
GGUGAGU	chr11:591361-591621(+)$1	260	105	112	18.2727
GGUGAGU	chr7:26235987-26236208(-)$1	221	187	194	18.2727
GGUAAGU	chr6:99851462-99851825(-)$1	363	120	127	15.6363

#otherMatches

#Struct PSSM
fffffll	chr1:43898044-43898303(+)$1	259	65	72	18.2727
mmmmfff	chr6:30557353-30557607(+)$1	254	143	150	15.6363
ffff]ee	chr2:27448947-27449185(+)$1	238	93	100	18.2727
FFFF===	chr10:129921118-129921404(-)$1	286	49	56	18.2727
qqqccca	chr11:65632137-65632447(+)$1	310	148	155	15.5454
======"	chr1:235403493-235403757(-)$1	264	129	136	18.2727
dd]a:ee	chr3:48580824-48581194(-)$1	370	181	188	18.2727
FFFKKEE	chr1:986905-987212(+)$1	307	119	126	15.5454
g4444ff	chr2:55883331-55883596(-)$1	265	156	163	15.6363
ffff]cc	chr9:35733065-35733376(+)$1	311	74	81	18.2727
dpppppp	chr12:49663644-49663939(+)$1	295	114	121	15.6363
ff!!bb[	chr17:73831728-73831975(-)$1	247	39	46	18.2727
ccc[a[d	chr8:145619229-145619523(-)$1	294	195	202	18.2727
ddd333e	chr7:73100976-73101262(+)$1	286	84	91	15.1818
fff[bbn	chr6:167365702-167366079(-)$1	377	103	110	18.2727
fffffcc	chr16:66785154-66785439(-)$1	285	51	58	15.2727
CBB{FFF	chr10:21971040-21971312(+)$1	272	145	152	15.6363
ee22fff	chr17:8053323-8053611(-)$1	288	83	90	15.2727
CCLLLGG	chr19:12826217-12826560(-)$1	343	36	43	15.5454
CC{DDDD	chr16:30779274-30779550(+)$1	276	61	68	15.1818
gggggg[	chr6:31726141-31726423(+)$1	282	80	87	15.1818
FFFF{AK	chr8:145737997-145738241(-)$1	244	11	18	15.2727
CCMMMME	chr1:43830339-43830610(-)$1	271	11	18	15.6363
eeecccl	chr22:19164453-19164736(-)$1	283	103	110	15.5454
bb[eeee	chr6:31937193-31937446(+)$1	253	3	10	18.2727
=[a[ccc	chr7:128480702-128481013(+)$1	311	25	32	18.2727
bb[dddd	chr11:64674589-64674847(-)$1	258	120	127	18.2727
pppppa]	chr8:145667215-145667541(-)$1	326	121	128	15.5454
bb####d	chr7:102963010-102963284(-)$1	274	134	141	15.6363
::::::i	chr2:61725871-61726148(-)$1	277	148	155	15.6363
qqqqqqc	chr5:176794723-176795027(+)$1	304	102	109	15.2727
BB{IIII	chr11:62651990-62652247(+)$1	257	6	13	18.2727
odddd33	chr2:178081146-178081434(+)$1	288	173	180	18.2727
fff"""c	chr6:30675216-30675523(-)$1	307	180	187	15.6363
dddd]cc	chr19:652180-652486(-)$1	306	253	260	18.2727
cccbb!!	chr17:17722404-17722705(-)$1	301	162	169	18.2727
FFFFFFF	chr11:208995-209276(+)$1	281	21	28	15.2727
FFFFF::	chr11:125499227-125499488(+)$1	261	127	134	15.6363
[bb"""c	chr2:219140531-219140849(-)$1	318	100	107	15.6363
FFFFFF:	chr9:131763978-131764307(+)$1	329	276	283	18.2727
hhhhhhl	chr16:1816569-1816832(+)$1	263	118	125	15.5454
cc!!ccc	chr19:1271916-1272187(+)$1	271	133	140	15.6363
fffff$$	chr5:37327553-37327853(-)$1	300	122	129	15.6363
fffeeee	chr12:123812233-123812508(-)$1	275	69	76	18.2727
CC{JJJJ	chr19:41209387-41209717(-)$1	330	97	104	15.1818
GGGGG}A	chr16:3076211-3076485(+)$1	274	77	84	15.5454
ccc]bb]	chr15:28421633-28421884(-)$1	251	51	58	18.2727
e]bb]ii	chr21:46915220-46915556(+)$1	336	125	132	18.2727
hhhhhh[	chr19:6416530-6416767(-)$1	237	18	25	18.2727
HHHHHH}	chr1:228333562-228333922(+)$1	360	205	212	18.2727
DDD}BB}	chr20:33894270-33894586(-)$1	316	117	124	18.2727
}EEEEEZ	chr19:10369222-10369470(+)$1	248	138	145	15.5454
ccc[ddd	chr11:591361-591621(+)$1	260	105	112	18.2727
fffgggg	chr7:26235987-26236208(-)$1	221	187	194	18.2727
2bb]bbf	chr6:99851462-99851825(-)$1	363	120	127	15.6363

#DB
(((((..	chr1:43898044-43898303(+)$1	1	65	72	18.2727
....)))	chr6:30557353-30557607(+)$1	1	143	150	15.6363
)))).))	chr2:27448947-27449185(+)$1	1	93	100	18.2727
(((((((	chr10:129921118-129921404(-)$1	1	49	56	18.2727
...))))	chr11:65632137-65632447(+)$1	1	148	155	15.5454
((((((.	chr1:235403493-235403757(-)$1	1	129	136	18.2727
)).).((	chr3:48580824-48581194(-)$1	1	181	188	18.2727
(((..((	chr1:986905-987212(+)$1	1	119	126	15.5454
)....))	chr2:55883331-55883596(-)$1	1	156	163	15.6363
)))).))	chr9:35733065-35733376(+)$1	1	74	81	18.2727
(......	chr12:49663644-49663939(+)$1	1	114	121	15.6363
((..((.	chr17:73831728-73831975(-)$1	1	39	46	18.2727
(((.(.(	chr8:145619229-145619523(-)$1	1	195	202	18.2727
)))...)	chr7:73100976-73101262(+)$1	1	84	91	15.1818
(((.((.	chr6:167365702-167366079(-)$1	1	103	110	18.2727
(((((((	chr16:66785154-66785439(-)$1	1	51	58	15.2727
(((.(((	chr10:21971040-21971312(+)$1	1	145	152	15.6363
))..)))	chr17:8053323-8053611(-)$1	1	83	90	15.2727
((...((	chr19:12826217-12826560(-)$1	1	36	43	15.5454
((.((((	chr16:30779274-30779550(+)$1	1	61	68	15.1818
((((((.	chr6:31726141-31726423(+)$1	1	80	87	15.1818
((((.(.	chr8:145737997-145738241(-)$1	1	11	18	15.2727
((....(	chr1:43830339-43830610(-)$1	1	11	18	15.6363
((((((.	chr22:19164453-19164736(-)$1	1	103	110	15.5454
((.((((	chr6:31937193-31937446(+)$1	1	3	10	18.2727
(.(.(((	chr7:128480702-128481013(+)$1	1	25	32	18.2727
((.((((	chr11:64674589-64674847(-)$1	1	120	127	18.2727
.....).	chr8:145667215-145667541(-)$1	1	121	128	15.5454
((....(	chr7:102963010-102963284(-)$1	1	134	141	15.6363
......(	chr2:61725871-61726148(-)$1	1	148	155	15.6363
......)	chr5:176794723-176795027(+)$1	1	102	109	15.2727
((.((((	chr11:62651990-62652247(+)$1	1	6	13	18.2727
.))))..	chr2:178081146-178081434(+)$1	1	173	180	18.2727
(((...(	chr6:30675216-30675523(-)$1	1	180	187	15.6363
)))).))	chr19:652180-652486(-)$1	1	253	260	18.2727
(((((..	chr17:17722404-17722705(-)$1	1	162	169	18.2727
(((((((	chr11:208995-209276(+)$1	1	21	28	15.2727
(((((..	chr11:125499227-125499488(+)$1	1	127	134	15.6363
.((...(	chr2:219140531-219140849(-)$1	1	100	107	15.6363
)))))).	chr9:131763978-131764307(+)$1	1	276	283	18.2727
((((((.	chr16:1816569-1816832(+)$1	1	118	125	15.5454
((..(((	chr19:1271916-1272187(+)$1	1	133	140	15.6363
(((((..	chr5:37327553-37327853(-)$1	1	122	129	15.6363
)))((((	chr12:123812233-123812508(-)$1	1	69	76	18.2727
((.((((	chr19:41209387-41209717(-)$1	1	97	104	15.1818
))))).)	chr16:3076211-3076485(+)$1	1	77	84	15.5454
))).)).	chr15:28421633-28421884(-)$1	1	51	58	18.2727
).)).))	chr21:46915220-46915556(+)$1	1	125	132	18.2727
((((((.	chr19:6416530-6416767(-)$1	1	18	25	18.2727
)))))).	chr1:228333562-228333922(+)$1	1	205	212	18.2727
))).)).	chr20:33894270-33894586(-)$1	1	117	124	18.2727
.))))).	chr19:10369222-10369470(+)$1	1	138	145	15.5454
(((.(((	chr11:591361-591621(+)$1	1	105	112	18.2727
)))))))	chr7:26235987-26236208(-)$1	1	187	194	18.2727
.)).)))	chr6:99851462-99851825(-)$1	1	120	127	15.6363

#PSSM
G : 1.00	
G : 1.00	
U : 1.00	
G : 0.76	A : 0.23	
A : 1.00	
G : 1.00	
U : 0.67	C : 0.14	G : 0.09	A : 0.07	u : 0.01	

#score	921.5454545454542
#seq	55
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_UTR_m1_run2.nuc.txt

#NT
GGAGG	chr11:57193109-57193351(-)$1	242	41	46	14.9999
GGAGG	chr16:448829-449109(+)$1	280	159	164	14.9999
ggagg	chr17:8076675-8076889(-)$1	214	20	25	14.9999
GGAGG	chr12:56554882-56555138(+)$1	256	102	107	14.9999
GGAGG	chr22:22313474-22313737(-)$1	263	97	102	14.9999
GGAGG	chr3:128514069-128514360(+)$1	291	71	76	14.9999
GGAGG	chr16:1361830-1362077(+)$1	247	96	101	14.9999
GGAGG	chr17:79817158-79817412(-)$1	254	16	21	14.9999
GGAGG	chr17:79479291-79479565(-)$1	274	57	62	14.9999
GGAGG	chr20:32246208-32246522(-)$1	314	30	35	14.9999
GGAGG	chr6:31657361-31657636(-)$1	275	76	81	14.9999
GGAGG	chr22:50018411-50018668(-)$1	257	119	124	14.9999
GGAGG	chr16:89789526-89789799(+)$1	273	48	53	14.9999
GGAGG	chr17:17722953-17723187(-)$1	234	109	114	14.9999
GGAGG	chr10:102762093-102762429(+)$1	336	82	87	14.9999
GGAGG	chrX:153648221-153648490(+)$1	269	55	60	14.9999
GGAGG	chr17:48453257-48453569(+)$1	312	271	276	14.9999
GGAGG	chr1:27105410-27105647(+)$1	237	25	30	14.9999
GGAGG	chr20:60709048-60709325(+)$1	277	80	85	14.9999
GGAGG	chr22:32003766-32004050(+)$1	284	114	119	14.9999
GGAGG	chr4:1359969-1360239(+)$1	270	158	163	14.9999
GGAGG	chr19:54972099-54972340(+)$1	241	20	25	14.9999
GGAGG	chr10:13688932-13689246(+)$1	314	69	74	14.9999
ggagg	chr17:8076646-8076875(-)$1	229	6	11	14.9999
GGAGG	chr15:34651805-34652098(-)$1	293	26	31	14.9999
GGAGG	chr16:89006122-89006418(-)$1	296	15	20	14.9999
GGAGG	chr17:76122911-76123191(-)$1	280	9	14	14.9999
ggagg	chr19:1883581-1883827(-)$1	246	85	90	14.9999
GGAGG	chr12:6715471-6715770(-)$1	299	95	100	14.9999
GGAGG	chr9:134360193-134360464(+)$1	271	47	52	14.9999
GGAGG	chr19:7997705-7997974(-)$1	269	100	105	14.9999
GGAGG	chr14:21731865-21732136(-)$1	271	8	13	14.9999
GGAGG	chr12:132402740-132403005(+)$1	265	217	222	14.9999
GGAGG	chr1:19430996-19431330(-)$1	334	110	115	14.9999
GGAGG	chr14:74206823-74207111(-)$1	288	112	117	14.9999
GGAGG	chr22:22313537-22313757(-)$1	220	117	122	14.9999
GGAGG	chr9:139562549-139562798(+)$1	249	33	38	14.9999
GGAGG	chr19:1881775-1882007(-)$1	232	66	71	14.9999
GGAGG	chr11:129762629-129762906(-)$1	277	50	55	14.9999
GGAGG	chr19:1271400-1271667(+)$1	267	148	153	14.9999
GGAGG	chr20:42088270-42088546(+)$1	276	145	150	14.9999
GGAGG	chr14:20825675-20825926(+)$1	251	21	26	14.9999
GGAGG	chr11:57193206-57193459(-)$1	253	149	154	14.9999
GGAGG	chr17:17131327-17131644(-)$1	317	111	116	14.9999
GGAGG	chr20:62330652-62330902(-)$1	250	62	67	14.9999
GGAGG	chrX:48434391-48434665(+)$1	274	48	53	14.9999
GGAGG	chr16:28847476-28847741(+)$1	265	118	123	14.9999
ggagg	chr2:97535532-97535788(-)$1	256	42	47	14.9999
GGAGG	chr3:129150291-129150572(-)$1	281	10	15	14.9999
GGAGG	chr12:132402870-132403143(+)$1	273	87	92	14.9999
ggagg	chr19:1882327-1882587(-)$1	260	46	51	14.9999
GGAGG	chr7:5569442-5569700(-)$1	258	170	175	14.9999
GGAGG	chr7:5569500-5569751(-)$1	251	221	226	14.9999
GGAGG	chr1:1018238-1018513(-)$1	275	216	221	14.9999
GGAGG	chr8:101962577-101962828(-)$1	251	51	56	14.9999
GGAGG	chr19:49605896-49606146(+)$1	250	106	111	14.9999
GGAGG	chr16:448071-448326(+)$1	255	66	71	14.9999
GGAGG	chr19:40742173-40742451(-)$1	278	52	57	14.9999
GGAGG	chr19:2228245-2228493(+)$1	248	240	245	14.9999
GGAGG	chr17:79479452-79479706(-)$1	254	198	203	14.9999
GGAGG	chr7:150774381-150774657(-)$1	276	211	216	14.9999
GGAGG	chrX:48434092-48434380(+)$1	288	115	120	14.9999
GGAGG	chr22:50016243-50016494(-)$1	251	91	96	14.9999
GGAGG	chr7:143079198-143079506(+)$1	308	201	206	14.9999
GGAGG	chr11:62397328-62397569(-)$1	241	26	31	14.9999
GGAGG	chr8:23425710-23425988(+)$1	278	201	206	14.9999
GGAGG	chr22:50016167-50016411(-)$1	244	8	13	14.9999

#otherMatches

#Struct PSSM
fffff	chr17:27071792-27072034(+)$1	242	30	35	14.9999
ppppp	chr11:57193109-57193351(-)$1	242	41	46	14.9999
A}EEE	chr16:448829-449109(+)$1	280	159	164	14.9999
eeeee	chr17:8076675-8076889(-)$1	214	20	25	14.9999
GGGGG	chr12:56554882-56555138(+)$1	256	102	107	14.9999
[iiii	chr22:22313474-22313737(-)$1	263	97	102	14.9999
hhhhh	chr3:128514069-128514360(+)$1	291	71	76	14.9999
iiiii	chr16:1361830-1362077(+)$1	247	96	101	14.9999
]dddd	chr17:79817158-79817412(-)$1	254	16	21	14.9999
NNNNN	chr17:79479291-79479565(-)$1	274	57	62	14.9999
fff:E	chr20:32246208-32246522(-)$1	314	30	35	14.9999
iiiid	chr6:31657361-31657636(-)$1	275	76	81	14.9999
F}CCC	chr22:50018411-50018668(-)$1	257	119	124	14.9999
eee##	chr16:89789526-89789799(+)$1	273	48	53	14.9999
fffff	chr17:17722953-17723187(-)$1	234	109	114	14.9999
a[eee	chr10:102762093-102762429(+)$1	336	82	87	14.9999
::FFF	chrX:153648221-153648490(+)$1	269	55	60	14.9999
CCCII	chr17:48453257-48453569(+)$1	312	271	276	14.9999
iinnn	chr1:27105410-27105647(+)$1	237	25	30	14.9999
:::dd	chr20:60709048-60709325(+)$1	277	80	85	14.9999
JJJJJ	chr22:32003766-32004050(+)$1	284	114	119	14.9999
:::::	chr4:1359969-1360239(+)$1	270	158	163	14.9999
fffff	chr19:54972099-54972340(+)$1	241	20	25	14.9999
HHHHH	chr10:13688932-13689246(+)$1	314	69	74	14.9999
DDD{E	chr17:8076646-8076875(-)$1	229	6	11	14.9999
EEE:d	chr15:34651805-34652098(-)$1	293	26	31	14.9999
nnnne	chr16:89006122-89006418(-)$1	296	15	20	14.9999
eeeec	chr17:76122911-76123191(-)$1	280	9	14	14.9999
!ccc"	chr19:1883581-1883827(-)$1	246	85	90	14.9999
=====	chr12:6715471-6715770(-)$1	299	95	100	14.9999
d:FFF	chr9:134360193-134360464(+)$1	271	47	52	14.9999
GG:dd	chr19:7997705-7997974(-)$1	269	100	105	14.9999
cccbb	chr14:21731865-21732136(-)$1	271	8	13	14.9999
hhhh]	chr12:132402740-132403005(+)$1	265	217	222	14.9999
a!!cc	chr1:19430996-19431330(-)$1	334	110	115	14.9999
hhhhh	chr14:74206823-74207111(-)$1	288	112	117	14.9999
biiii	chr22:22313537-22313757(-)$1	220	117	122	14.9999
ff22c	chr9:139562549-139562798(+)$1	249	33	38	14.9999
dd!!c	chr19:1881775-1882007(-)$1	232	66	71	14.9999
pppdd	chr11:129762629-129762906(-)$1	277	50	55	14.9999
=====	chr19:1271400-1271667(+)$1	267	148	153	14.9999
ggggg	chr20:42088270-42088546(+)$1	276	145	150	14.9999
iiiii	chr14:20825675-20825926(+)$1	251	21	26	14.9999
beeee	chr11:57193206-57193459(-)$1	253	149	154	14.9999
IIIII	chr17:17131327-17131644(-)$1	317	111	116	14.9999
fffff	chr20:62330652-62330902(-)$1	250	62	67	14.9999
{DDDD	chrX:48434391-48434665(+)$1	274	48	53	14.9999
:::cc	chr16:28847476-28847741(+)$1	265	118	123	14.9999
JJJJ{	chr2:97535532-97535788(-)$1	256	42	47	14.9999
GG:::	chr3:129150291-129150572(-)$1	281	10	15	14.9999
DDDD{	chr12:132402870-132403143(+)$1	273	87	92	14.9999
BBKKC	chr19:1882327-1882587(-)$1	260	46	51	14.9999
i!!cc	chr7:5569442-5569700(-)$1	258	170	175	14.9999
i!!cc	chr7:5569500-5569751(-)$1	251	221	226	14.9999
D}BBE	chr1:1018238-1018513(-)$1	275	216	221	14.9999
MDDDD	chr8:101962577-101962828(-)$1	251	51	56	14.9999
GGGGG	chr19:49605896-49606146(+)$1	250	106	111	14.9999
EEEEE	chr16:448071-448326(+)$1	255	66	71	14.9999
JJJJJ	chr19:40742173-40742451(-)$1	278	52	57	14.9999
cccDD	chr19:2228245-2228493(+)$1	248	240	245	14.9999
4ffff	chr17:79479452-79479706(-)$1	254	198	203	14.9999
bbsss	chr7:150774381-150774657(-)$1	276	211	216	14.9999
=====	chrX:48434092-48434380(+)$1	288	115	120	14.9999
EEEEe	chr22:50016243-50016494(-)$1	251	91	96	14.9999
ff:dd	chr7:143079198-143079506(+)$1	308	201	206	14.9999
HHHHH	chr11:62397328-62397569(-)$1	241	26	31	14.9999
nnnee	chr8:23425710-23425988(+)$1	278	201	206	14.9999
JJJJJ	chr22:50016167-50016411(-)$1	244	8	13	14.9999

#DB
(((((	chr17:27071792-27072034(+)$1	1	30	35	14.9999
.....	chr11:57193109-57193351(-)$1	1	41	46	14.9999
).)))	chr16:448829-449109(+)$1	1	159	164	14.9999
)))))	chr17:8076675-8076889(-)$1	1	20	25	14.9999
(((((	chr12:56554882-56555138(+)$1	1	102	107	14.9999
.((((	chr22:22313474-22313737(-)$1	1	97	102	14.9999
(((((	chr3:128514069-128514360(+)$1	1	71	76	14.9999
(((((	chr16:1361830-1362077(+)$1	1	96	101	14.9999
.))))	chr17:79817158-79817412(-)$1	1	16	21	14.9999
.....	chr17:79479291-79479565(-)$1	1	57	62	14.9999
))).(	chr20:32246208-32246522(-)$1	1	30	35	14.9999
(((((	chr6:31657361-31657636(-)$1	1	76	81	14.9999
).)))	chr22:50018411-50018668(-)$1	1	119	124	14.9999
(((..	chr16:89789526-89789799(+)$1	1	48	53	14.9999
(((((	chr17:17722953-17723187(-)$1	1	109	114	14.9999
(.(((	chr10:102762093-102762429(+)$1	1	82	87	14.9999
..(((	chrX:153648221-153648490(+)$1	1	55	60	14.9999
)))))	chr17:48453257-48453569(+)$1	1	271	276	14.9999
((...	chr1:27105410-27105647(+)$1	1	25	30	14.9999
...((	chr20:60709048-60709325(+)$1	1	80	85	14.9999
)))))	chr22:32003766-32004050(+)$1	1	114	119	14.9999
.....	chr4:1359969-1360239(+)$1	1	158	163	14.9999
)))))	chr19:54972099-54972340(+)$1	1	20	25	14.9999
(((((	chr10:13688932-13689246(+)$1	1	69	74	14.9999
(((.(	chr17:8076646-8076875(-)$1	1	6	11	14.9999
(((.(	chr15:34651805-34652098(-)$1	1	26	31	14.9999
....)	chr16:89006122-89006418(-)$1	1	15	20	14.9999
(((((	chr17:76122911-76123191(-)$1	1	9	14	14.9999
.(((.	chr19:1883581-1883827(-)$1	1	85	90	14.9999
(((((	chr12:6715471-6715770(-)$1	1	95	100	14.9999
).(((	chr9:134360193-134360464(+)$1	1	47	52	14.9999
((.((	chr19:7997705-7997974(-)$1	1	100	105	14.9999
(((((	chr14:21731865-21732136(-)$1	1	8	13	14.9999
)))).	chr12:132402740-132403005(+)$1	1	217	222	14.9999
(..((	chr1:19430996-19431330(-)$1	1	110	115	14.9999
(((((	chr14:74206823-74207111(-)$1	1	112	117	14.9999
(((((	chr22:22313537-22313757(-)$1	1	117	122	14.9999
))..)	chr9:139562549-139562798(+)$1	1	33	38	14.9999
((..(	chr19:1881775-1882007(-)$1	1	66	71	14.9999
...))	chr11:129762629-129762906(-)$1	1	50	55	14.9999
)))))	chr19:1271400-1271667(+)$1	1	148	153	14.9999
)))))	chr20:42088270-42088546(+)$1	1	145	150	14.9999
(((((	chr14:20825675-20825926(+)$1	1	21	26	14.9999
)))))	chr11:57193206-57193459(-)$1	1	149	154	14.9999
)))))	chr17:17131327-17131644(-)$1	1	111	116	14.9999
)))))	chr20:62330652-62330902(-)$1	1	62	67	14.9999
.((((	chrX:48434391-48434665(+)$1	1	48	53	14.9999
...((	chr16:28847476-28847741(+)$1	1	118	123	14.9999
((((.	chr2:97535532-97535788(-)$1	1	42	47	14.9999
((...	chr3:129150291-129150572(-)$1	1	10	15	14.9999
((((.	chr12:132402870-132403143(+)$1	1	87	92	14.9999
((..(	chr19:1882327-1882587(-)$1	1	46	51	14.9999
(..((	chr7:5569442-5569700(-)$1	1	170	175	14.9999
(..((	chr7:5569500-5569751(-)$1	1	221	226	14.9999
).)))	chr1:1018238-1018513(-)$1	1	216	221	14.9999
.((((	chr8:101962577-101962828(-)$1	1	51	56	14.9999
)))))	chr19:49605896-49606146(+)$1	1	106	111	14.9999
(((((	chr16:448071-448326(+)$1	1	66	71	14.9999
(((((	chr19:40742173-40742451(-)$1	1	52	57	14.9999
)))))	chr19:2228245-2228493(+)$1	1	240	245	14.9999
.))))	chr17:79479452-79479706(-)$1	1	198	203	14.9999
((...	chr7:150774381-150774657(-)$1	1	211	216	14.9999
)))))	chrX:48434092-48434380(+)$1	1	115	120	14.9999
(((((	chr22:50016243-50016494(-)$1	1	91	96	14.9999
)).((	chr7:143079198-143079506(+)$1	1	201	206	14.9999
(((((	chr11:62397328-62397569(-)$1	1	26	31	14.9999
...))	chr8:23425710-23425988(+)$1	1	201	206	14.9999
(((((	chr22:50016167-50016411(-)$1	1	8	13	14.9999

#PSSM
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	

#score	1019.9999999999995
#seq	68
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_UTR_m2_run1.nuc.txt

#NT
cccuccuucccuccucucc	chr17:30263987-30264300(+)$1	313	110	129	26.8913
CCCCCUUCUCCCCUGUGCC	chr6:33383521-33383806(+)$1	285	186	205	12.5434
cacuccuccccuccUUCGC	chr17:1247870-1248174(-)$1	304	161	180	24.1739
CCCAGCUCCCCACCCUGGC	chr17:27206450-27206674(-)$1	224	179	198	16.3478
UCCUCCCUCCCUCCCUGCG	chr19:1394402-1394657(+)$1	255	110	129	19.9347
CUCUUCCCUCUUCCUUCCC	chr14:21269563-21269859(-)$1	296	157	176	15.0434
ccccccucgccuucccgcc	chr12:53846029-53846261(+)$1	232	28	47	18.0869
CCCUUGUCCACCCCUCUCC	chrX:47074334-47074595(+)$1	261	18	37	16.1304
CCCUCACCCUCUUCUUUCG	chr6:88411304-88411576(-)$1	272	105	124	15.1521
CCCUCCUUCGCUCCUUCCA	chr7:150070570-150070831(+)$1	261	208	227	23.6304
ccccccuccccuucuccuc	chr17:57697241-57697555(+)$1	314	155	174	19.9347
CCCUCCCCGCUUCCUGACC	chr17:41167809-41168075(-)$1	266	148	167	18.8478
ACCCCAUCCCUUCCUCCCC	chr1:155260168-155260470(-)$1	302	144	163	16.8913
gccucccucccuccuggcc	chr5:10307858-10308119(-)$1	261	126	145	20.8043
uccuccuccucuucuuccu	chr16:2819004-2819360(+)$1	356	126	145	19.2826
ccugucuccccucccuccc	chr19:54377780-54378033(+)$1	253	78	97	18.7391
CCCUCCUCCCCUCCUUGCA	chr16:223530-223767(+)$1	237	118	137	30.0434
CCCUCCCCCACUCCUCUAA	chr9:133761850-133762103(+)$1	253	204	223	18.8478
CCCCCCAGCCCCCCUUCCA	chr3:50296295-50296610(+)$1	315	113	132	19.3913
caccucuccccaccuuacc	chr12:110784689-110784991(+)$1	302	148	167	17.2173
CCCUCCCUCCCUCUCCGCA	chr19:54972709-54972976(+)$1	267	108	127	18.3043
CUUUCCUCCCCUCCUUUAU	chr19:896680-896936(-)$1	256	173	192	17.9782
UCCACCUCCCCUCCCUCCA	chr1:27107240-27107592(+)$1	352	170	189	22.3260
CCCCCCAGCCGUCCCCGCA	chr22:20936807-20937126(+)$1	319	169	188	14.7173
CCUUCCUCCCAUCCUUGUC	chr22:22277271-22277558(-)$1	287	118	137	20.3695
CCCCCAUCCCCACCCCUCA	chr1:44686822-44687107(-)$1	285	85	104	17.3260
ccccccccccgcccUUUGA	chr11:118443036-118443358(+)$1	322	28	47	16.1304
CCCUGCUCCUUUCCCUUCC	chr11:73964677-73964942(+)$1	265	98	117	18.3043
CCCUCCUUCGCUCCUUUUU	chr11:64979135-64979415(+)$1	280	180	199	19.4999
CCCUCCUCCCACCUUCACU	chr1:54412007-54412278(+)$1	271	77	96	17.5434
CCCUCCUUCCCUCUCUUCU	chr6:30036939-30037206(+)$1	267	214	233	21.1304
CCCUCGUCCACCCCCCACA	chr22:43015358-43015636(-)$1	278	130	149	16.1304
UCUUCCUCUCCUCCUUCCC	chr19:56671519-56671800(+)$1	281	130	149	21.4565
CCCACCCCACCUCCCCGGA	chr19:56206692-56206944(+)$1	252	179	198	14.7173
CCCUUCUGGCCCCCUGCCU	chr11:65622668-65622910(-)$1	242	106	125	14.7173
UCCUCCUCCCUGCCCAGCC	chr17:36891490-36891814(-)$1	324	120	139	17.7608
UCCUCGUCCCCGCCCCGCG	chr20:62588013-62588293(-)$1	280	132	151	16.4565
CCCUCUGCCCCUCCUGUCC	chr19:13249189-13249506(+)$1	317	154	173	21.4565
CACCCCUUUCCCCCUUGGC	chr19:41270971-41271311(+)$1	340	143	162	13.7391
uccucccucccuccuuccc	chr20:3777001-3777227(+)$1	226	48	67	23.8478
GCAUCCUCUCCCCCAUGCU	chr1:159888297-159888575(-)$1	278	145	164	13.6304
uccuccacccccccuuccu	chr12:53845883-53846104(+)$1	221	136	155	21.8913
ccuuccucucuuccuuccu	chr5:137089752-137090056(-)$1	304	124	143	19.4999
CCCUCCCGCCCGCUUCCCC	chr11:65325399-65325665(-)$1	266	95	114	17.8695
CUCUCCGCCCCUCCUUGCC	chr6:30654243-30654495(-)$1	252	152	171	24.2826

#otherMatches

#Struct PSSM
22dddd55555hhhhhhhh	chr22:36863158-36863413(-)$1	255	228	247	20.1521
g::DDDD}DDDDDDDDYYD	chr17:30263987-30264300(+)$1	313	110	129	26.8913
dvvvvvvvvvvvvvdddd]	chr6:33383521-33383806(+)$1	285	186	205	12.5434
:::::::::::::::::::	chr17:1247870-1248174(-)$1	304	161	180	24.1739
b]dddd]dddd:::FFFFF	chr17:27206450-27206674(-)$1	224	179	198	16.3478
[a[ccc))))))))))a[c	chr19:1394402-1394657(+)$1	255	110	129	19.9347
}BB::::::dddd[ccc[a	chr14:21269563-21269859(-)$1	296	157	176	15.0434
bpppppppbb333eeeee2	chr12:53846029-53846261(+)$1	232	28	47	18.0869
$$$$cccuuuuuuuuuuuu	chrX:47074334-47074595(+)$1	261	18	37	16.1304
::::::::::::::::ccc	chr6:88411304-88411576(-)$1	272	105	124	15.1521
:::::::::ddddoooooo	chr7:150070570-150070831(+)$1	261	208	227	23.6304
555bbdddd:::iiiiiii	chr17:57697241-57697555(+)$1	314	155	174	19.9347
GGGGGGG============	chr17:41167809-41168075(-)$1	266	148	167	18.8478
ffffccc:::::::::::E	chr1:155260168-155260470(-)$1	302	144	163	16.8913
CCC::::::::::::eeee	chr5:10307858-10308119(-)$1	261	126	145	20.8043
::::::GGGGGGGZZZAYY	chr16:2819004-2819360(+)$1	356	126	145	19.2826
99999ccc:::::::::::	chr19:54377780-54378033(+)$1	253	78	97	18.7391
fff:::::::::::::::e	chr16:223530-223767(+)$1	237	118	137	30.0434
:::BBGGGGGGGccc[eee	chr9:133761850-133762103(+)$1	253	204	223	18.8478
:::::::::::::::::::	chr3:50296295-50296610(+)$1	315	113	132	19.3913
:::::::::::::::::::	chr12:110784689-110784991(+)$1	302	148	167	17.2173
:::::::::::::::::::	chr19:54972709-54972976(+)$1	267	108	127	18.3043
:::::::::::::::::::	chr19:896680-896936(-)$1	256	173	192	17.9782
::::::::::::::FFFFF	chr1:27107240-27107592(+)$1	352	170	189	22.3260
CC}CCC}CCCCCC}EEEEE	chr22:20936807-20937126(+)$1	319	169	188	14.7173
GGGG}EEEEE::HHHHHHH	chr22:22277271-22277558(-)$1	287	118	137	20.3695
e$$$$$eeeee))))))))	chr1:44686822-44687107(-)$1	285	85	104	17.3260
C::::::::::iiiiiiii	chr11:118443036-118443358(+)$1	322	28	47	16.1304
^^^^^^^^^^^^^^^^^ee	chr11:73964677-73964942(+)$1	265	98	117	18.3043
eeee%%%%%%gggggggzz	chr11:64979135-64979415(+)$1	280	180	199	19.4999
JJJJJJJJJJRRRRRRRRR	chr1:54412007-54412278(+)$1	271	77	96	17.5434
:dddd[hhhhhhhh!!bbn	chr6:30036939-30037206(+)$1	267	214	233	21.1304
nnnnnccc0000000000c	chr22:43015358-43015636(-)$1	278	130	149	16.1304
>>>>>>>>>>>>>>>>>cc	chr19:56671519-56671800(+)$1	281	130	149	21.4565
@@@@@@@@@@EEEEE}BB}	chr19:56206692-56206944(+)$1	252	179	198	14.7173
EEEE{DDDDFFFFFFCCC:	chr11:65622668-65622910(-)$1	242	106	125	14.7173
WWWWWWWWWDDDD{CCCKK	chr17:36891490-36891814(-)$1	324	120	139	17.7608
B:::::::ddddiiiiiii	chr20:62588013-62588293(-)$1	280	132	151	16.4565
[dddddddd"""hhhhhhh	chr19:13249189-13249506(+)$1	317	154	173	21.4565
ffvvvvvvvvvvvvvffff	chr19:41270971-41271311(+)$1	340	143	162	13.7391
KKBBWWWWWWWWWWWWWWW	chr20:3777001-3777227(+)$1	226	48	67	23.8478
ddd]dddd:::::::::::	chr1:159888297-159888575(-)$1	278	145	164	13.6304
:::::::::::::::::::	chr12:53845883-53846104(+)$1	221	136	155	21.8913
f::::::::::::::::::	chr5:137089752-137090056(-)$1	304	124	143	19.4999
pppppdddd:::::::::E	chr11:65325399-65325665(-)$1	266	95	114	17.8695
B}JJJJJJJJJJJYYDDDD	chr6:30654243-30654495(-)$1	252	152	171	24.2826

#DB
..)))).....))))))))	chr22:36863158-36863413(-)$1	1	228	247	20.1521
)..)))).))))))))..)	chr17:30263987-30264300(+)$1	1	110	129	26.8913
(.............)))).	chr6:33383521-33383806(+)$1	1	186	205	12.5434
...................	chr17:1247870-1248174(-)$1	1	161	180	24.1739
).)))).))))...)))))	chr17:27206450-27206674(-)$1	1	179	198	16.3478
.(.(((..........(.(	chr19:1394402-1394657(+)$1	1	110	129	19.9347
.))......((((.(((.(	chr14:21269563-21269859(-)$1	1	157	176	15.0434
(.......))...))))).	chr12:53846029-53846261(+)$1	1	28	47	18.0869
....(((............	chrX:47074334-47074595(+)$1	1	18	37	16.1304
................(((	chr6:88411304-88411576(-)$1	1	105	124	15.1521
.........((((......	chr7:150070570-150070831(+)$1	1	208	227	23.6304
...))))))...(((((((	chr17:57697241-57697555(+)$1	1	155	174	19.9347
(((((((((((((((((((	chr17:41167809-41168075(-)$1	1	148	167	18.8478
)))))))...........)	chr1:155260168-155260470(-)$1	1	144	163	16.8913
(((............((((	chr5:10307858-10308119(-)$1	1	126	145	20.8043
......)))))))...)..	chr16:2819004-2819360(+)$1	1	126	145	19.2826
.....)))...........	chr19:54377780-54378033(+)$1	1	78	97	18.7391
)))...............(	chr16:223530-223767(+)$1	1	118	137	30.0434
...)))))))))(((.(((	chr9:133761850-133762103(+)$1	1	204	223	18.8478
...................	chr3:50296295-50296610(+)$1	1	113	132	19.3913
...................	chr12:110784689-110784991(+)$1	1	148	167	17.2173
...................	chr19:54972709-54972976(+)$1	1	108	127	18.3043
...................	chr19:896680-896936(-)$1	1	173	192	17.9782
..............)))))	chr1:27107240-27107592(+)$1	1	170	189	22.3260
)).))).)))))).)))))	chr22:20936807-20937126(+)$1	1	169	188	14.7173
)))).)))))..(((((((	chr22:22277271-22277558(-)$1	1	118	137	20.3695
(.....(((((........	chr1:44686822-44687107(-)$1	1	85	104	17.3260
(..........((((((((	chr11:118443036-118443358(+)$1	1	28	47	16.1304
.................))	chr11:73964677-73964942(+)$1	1	98	117	18.3043
((((......(((((((..	chr11:64979135-64979415(+)$1	1	180	199	19.4999
((((((((((.........	chr1:54412007-54412278(+)$1	1	77	96	17.5434
.((((.((((((((..((.	chr6:30036939-30037206(+)$1	1	214	233	21.1304
.....)))..........)	chr22:43015358-43015636(-)$1	1	130	149	16.1304
.................))	chr19:56671519-56671800(+)$1	1	130	149	21.4565
..........))))).)).	chr19:56206692-56206944(+)$1	1	179	198	14.7173
((((.(((((((((((((.	chr11:65622668-65622910(-)$1	1	106	125	14.7173
.........((((.(((..	chr17:36891490-36891814(-)$1	1	120	139	17.7608
(.......(((((((((((	chr20:62588013-62588293(-)$1	1	132	151	16.4565
.((((((((...(((((((	chr19:13249189-13249506(+)$1	1	154	173	21.4565
((.............))))	chr19:41270971-41271311(+)$1	1	143	162	13.7391
..((...............	chr20:3777001-3777227(+)$1	1	48	67	23.8478
))).))))...........	chr1:159888297-159888575(-)$1	1	145	164	13.6304
...................	chr12:53845883-53846104(+)$1	1	136	155	21.8913
)..................	chr5:137089752-137090056(-)$1	1	124	143	19.4999
.....)))).........(	chr11:65325399-65325665(-)$1	1	95	114	17.8695
).)))))))))))..))))	chr6:30654243-30654495(-)$1	1	152	171	24.2826

#PSSM
C : 0.56	c : 0.17	U : 0.10	u : 0.06	G : 0.04	A : 0.02	g : 0.02	
C : 0.65	c : 0.21	U : 0.06	a : 0.04	A : 0.02	
C : 0.65	c : 0.21	U : 0.06	u : 0.04	A : 0.02	
U : 0.54	u : 0.15	C : 0.13	c : 0.08	A : 0.06	g : 0.02	
C : 0.63	c : 0.21	U : 0.06	G : 0.04	u : 0.04	
C : 0.56	c : 0.26	G : 0.06	A : 0.06	U : 0.04	
U : 0.47	u : 0.17	C : 0.17	c : 0.06	A : 0.04	G : 0.04	a : 0.02	
C : 0.52	c : 0.19	U : 0.13	G : 0.08	u : 0.06	
C : 0.56	c : 0.21	U : 0.10	G : 0.04	g : 0.02	A : 0.02	u : 0.02	
C : 0.56	c : 0.23	U : 0.06	A : 0.06	G : 0.04	u : 0.02	
C : 0.56	c : 0.21	U : 0.10	A : 0.04	G : 0.02	g : 0.02	u : 0.02	
U : 0.45	u : 0.19	C : 0.17	G : 0.06	A : 0.04	c : 0.04	a : 0.02	
C : 0.71	c : 0.19	u : 0.06	U : 0.02	
C : 0.63	c : 0.26	U : 0.10	
U : 0.47	C : 0.26	u : 0.17	c : 0.04	G : 0.02	A : 0.02	
U : 0.45	C : 0.23	u : 0.13	c : 0.06	G : 0.06	g : 0.02	A : 0.02	
G : 0.28	U : 0.21	C : 0.19	c : 0.13	A : 0.08	g : 0.04	u : 0.02	a : 0.02	
C : 0.56	c : 0.19	G : 0.13	A : 0.04	U : 0.04	u : 0.02	
C : 0.34	A : 0.23	c : 0.15	U : 0.13	G : 0.06	u : 0.06	

#score	869.1739130434779
#seq	46
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_UTR_m1_run1.nuc.txt

#NT
UUCCUG	chr5:151122386-151122621(-)$1	235	166	172	16.1428
UUCCUG	chr14:24686121-24686383(-)$1	262	205	211	16.1428
UUCCUG	chr22:18074957-18075357(-)$1	400	202	208	16.1428
UUCCUG	chr1:23884772-23885007(-)$1	235	215	221	16.1428
UUCCUG	chr14:24608015-24608259(+)$1	244	50	56	16.1428
UUCCUG	chr17:79802921-79803129(-)$1	208	68	74	16.1428
UUCCUG	chr7:2704202-2704492(+)$1	290	241	247	16.1428
UUCCUG	chr15:75095236-75095485(+)$1	249	22	28	16.1428
cuccug	chr12:120634434-120634696(-)$1	262	29	35	14.8571
UUCCUG	chr3:197680865-197681110(+)$1	245	118	124	16.1428
UUCCUG	chr19:42801128-42801448(-)$1	320	270	276	16.1428
UUCCUG	chr7:16745914-16746181(+)$1	267	260	266	16.1428
UUCCUG	chr6:42906821-42907063(+)$1	242	229	235	16.1428
UUCCUG	chr20:1424159-1424464(-)$1	305	245	251	16.1428
CUCCUG	chr15:64448110-64448389(-)$1	279	1	7	14.8571
UUCCUG	chr2:85808701-85808945(+)$1	244	213	219	16.1428
UUCCUG	chr16:31202688-31202921(+)$1	233	149	155	16.1428
UUCCUG	chr11:65622492-65622745(-)$1	253	10	16	16.1428
CUCCUG	chr11:46760839-46761065(+)$1	226	139	145	14.8571
CUCCUG	chr3:133497366-133497571(+)$1	205	65	71	14.8571
CUCCUG	chr19:44012050-44012301(-)$1	251	14	20	14.8571
UUCCUG	chr11:62283682-62283901(-)$1	219	135	141	16.1428
CUCCUG	chr16:4432888-4433153(+)$1	265	70	76	14.8571
CUCCUG	chr4:1160754-1161060(-)$1	306	50	56	14.8571
CUCCUG	chr7:75615838-75616061(+)$1	223	9	15	14.8571
CUCCUG	chr19:45422442-45422654(+)$1	212	165	171	14.8571
UUCCUG	chr14:94770511-94770834(-)$1	323	50	56	16.1428
UUCCUG	chr4:6643443-6643734(+)$1	291	102	108	16.1428
UUCCUG	chr19:19638817-19639056(+)$1	239	200	206	16.1428
CUCCUG	chr19:39979080-39979385(+)$1	305	246	252	14.8571
UUCCUG	chr11:67165606-67165829(-)$1	223	5	11	16.1428
CUCCUG	chr3:133497398-133497603(+)$1	205	33	39	14.8571
UUCCUG	chr4:6698727-6698980(+)$1	253	62	68	16.1428
CUCCUG	chr6:33385252-33385506(-)$1	254	21	27	14.8571

#otherMatches

#Struct PSSM
[eeeee	chr10:81915317-81915619(-)$1	302	149	155	14.8571
:::ccc	chr5:151122386-151122621(-)$1	235	166	172	16.1428
$$$$$e	chr14:24686121-24686383(-)$1	262	205	211	16.1428
e[a!!e	chr22:18074957-18075357(-)$1	400	202	208	16.1428
:::::G	chr1:23884772-23885007(-)$1	235	215	221	16.1428
qqqeee	chr14:24608015-24608259(+)$1	244	50	56	16.1428
ffffff	chr17:79802921-79803129(-)$1	208	68	74	16.1428
!!bb[e	chr7:2704202-2704492(+)$1	290	241	247	16.1428
DDDD{C	chr15:75095236-75095485(+)$1	249	22	28	16.1428
b::::e	chr12:120634434-120634696(-)$1	262	29	35	14.8571
ppppdd	chr3:197680865-197681110(+)$1	245	118	124	16.1428
6666cc	chr19:42801128-42801448(-)$1	320	270	276	16.1428
:CCC::	chr7:16745914-16746181(+)$1	267	260	266	16.1428
::::EE	chr6:42906821-42907063(+)$1	242	229	235	16.1428
!ccc!!	chr20:1424159-1424464(-)$1	305	245	251	16.1428
:::CCC	chr15:64448110-64448389(-)$1	279	1	7	14.8571
cccddd	chr2:85808701-85808945(+)$1	244	213	219	16.1428
b####b	chr16:31202688-31202921(+)$1	233	149	155	16.1428
:::::F	chr11:65622492-65622745(-)$1	253	10	16	16.1428
ffffff	chr11:46760839-46761065(+)$1	226	139	145	14.8571
rrrrcc	chr3:133497366-133497571(+)$1	205	65	71	14.8571
eee::e	chr19:44012050-44012301(-)$1	251	14	20	14.8571
:JJJJJ	chr11:62283682-62283901(-)$1	219	135	141	16.1428
::dddd	chr16:4432888-4433153(+)$1	265	70	76	14.8571
ammmma	chr4:1160754-1161060(-)$1	306	50	56	14.8571
::EEEE	chr7:75615838-75616061(+)$1	223	9	15	14.8571
eeee[e	chr19:45422442-45422654(+)$1	212	165	171	14.8571
>>>>cc	chr14:94770511-94770834(-)$1	323	50	56	16.1428
ggggdd	chr4:6643443-6643734(+)$1	291	102	108	16.1428
gg22ff	chr19:19638817-19639056(+)$1	239	200	206	16.1428
hhhhhn	chr19:39979080-39979385(+)$1	305	246	252	14.8571
Ffffff	chr11:67165606-67165829(-)$1	223	5	11	16.1428
rrrrcc	chr3:133497398-133497603(+)$1	205	33	39	14.8571
e[a[cc	chr4:6698727-6698980(+)$1	253	62	68	16.1428
eeeeeb	chr6:33385252-33385506(-)$1	254	21	27	14.8571

#DB
.(((((	chr10:81915317-81915619(-)$1	1	149	155	14.8571
...(((	chr5:151122386-151122621(-)$1	1	166	172	16.1428
.....(	chr14:24686121-24686383(-)$1	1	205	211	16.1428
(.(..(	chr22:18074957-18075357(-)$1	1	202	208	16.1428
.....)	chr1:23884772-23885007(-)$1	1	215	221	16.1428
...)))	chr14:24608015-24608259(+)$1	1	50	56	16.1428
))))))	chr17:79802921-79803129(-)$1	1	68	74	16.1428
..((.(	chr7:2704202-2704492(+)$1	1	241	247	16.1428
((((.(	chr15:75095236-75095485(+)$1	1	22	28	16.1428
)....(	chr12:120634434-120634696(-)$1	1	29	35	14.8571
....))	chr3:197680865-197681110(+)$1	1	118	124	16.1428
....))	chr19:42801128-42801448(-)$1	1	270	276	16.1428
.)))..	chr7:16745914-16746181(+)$1	1	260	266	16.1428
....))	chr6:42906821-42907063(+)$1	1	229	235	16.1428
.(((..	chr20:1424159-1424464(-)$1	1	245	251	16.1428
...(((	chr15:64448110-64448389(-)$1	1	1	7	14.8571
((((((	chr2:85808701-85808945(+)$1	1	213	219	16.1428
(....(	chr16:31202688-31202921(+)$1	1	149	155	16.1428
.....(	chr11:65622492-65622745(-)$1	1	10	16	16.1428
))))))	chr11:46760839-46761065(+)$1	1	139	145	14.8571
....))	chr3:133497366-133497571(+)$1	1	65	71	14.8571
)))..(	chr19:44012050-44012301(-)$1	1	14	20	14.8571
.)))))	chr11:62283682-62283901(-)$1	1	135	141	16.1428
..((((	chr16:4432888-4433153(+)$1	1	70	76	14.8571
(....)	chr4:1160754-1161060(-)$1	1	50	56	14.8571
..((((	chr7:75615838-75616061(+)$1	1	9	15	14.8571
((((.(	chr19:45422442-45422654(+)$1	1	165	171	14.8571
....))	chr14:94770511-94770834(-)$1	1	50	56	16.1428
))))))	chr4:6643443-6643734(+)$1	1	102	108	16.1428
))..))	chr19:19638817-19639056(+)$1	1	200	206	16.1428
(((((.	chr19:39979080-39979385(+)$1	1	246	252	14.8571
((((((	chr11:67165606-67165829(-)$1	1	5	11	16.1428
....))	chr3:133497398-133497603(+)$1	1	33	39	14.8571
(.(.((	chr4:6698727-6698980(+)$1	1	62	68	16.1428
))))))	chr6:33385252-33385506(-)$1	1	21	27	14.8571

#PSSM
U : 0.62	C : 0.34	c : 0.02	
U : 0.97	u : 0.02	
C : 0.97	c : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	

#score	548.2857142857142
#seq	35
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_transcript_m1_run1.nuc.txt

#NT
gaaacaa	chr13:75884787-75885051(-)$1	264	62	69	12.8493
gaaagga	chr7:76220931-76221216(+)$1	285	44	51	12.3698
aaaagaa	chr2:159329086-159329341(+)$1	255	55	62	12.9863
CAAAGAA	chr20:44517263-44517522(-)$1	259	92	99	13.1917
gaaagaa	chr2:138749394-138749694(+)$1	300	138	145	16.7534
CAAAGAA	chr16:87953668-87953921(-)$1	253	39	46	13.1917
GAAAGAA	chr16:23647209-23647491(-)$1	282	64	71	16.7534
gacagaa	chr4:107074523-107074789(-)$1	266	0	7	12.5068
GAUAGAA	chr16:18861541-18861831(-)$1	290	201	208	12.3698
GAAAGAG	chr18:9257128-9257427(+)$1	299	202	209	12.0958
UAAAGAA	chr3:99567879-99568152(-)$1	273	23	30	12.9178
GAAGGAA	chr12:133503594-133503846(-)$1	252	57	64	13.6027
GACAGAA	chr20:45256930-45257189(-)$1	259	244	251	12.5068
gaaggaa	chr15:65974776-65975038(-)$1	262	83	90	13.6027
caaagaa	chr2:128259796-128260030(-)$1	234	37	44	13.1917
GAAAGGA	chr7:99634369-99634607(+)$1	238	52	59	12.3698
GAAAGGA	chr2:71650208-71650512(+)$1	304	132	139	12.3698
gaaaaaa	chr2:99742460-99742754(-)$1	294	49	56	12.9178
GGAAGAA	chr17:65850007-65850265(+)$1	258	91	98	12.2328
gaaaaaa	chr6:2339885-2340211(+)$1	326	277	284	12.9178
gaaggaa	chr2:188355568-188355825(-)$1	257	69	76	13.6027
GAAAGAA	chr2:167142762-167143028(-)$1	266	3	10	16.7534
gagagAA	chr10:133762882-133763118(+)$1	236	2	9	12.5753
GAAAGAA	chr1:155451381-155451637(-)$1	256	94	101	16.7534
GAAAGAA	chr3:37368969-37369253(+)$1	284	5	12	16.7534
GAAGGAA	chr2:61632744-61633005(-)$1	261	69	76	13.6027
GAAAGAC	chr8:94747958-94748209(-)$1	251	4	11	12.0273
GAAACAA	chr2:159404443-159404710(+)$1	267	194	201	12.8493
GAAAGAA	chr17:49328507-49328739(-)$1	232	54	61	16.7534
AAAAGAA	chr2:170493883-170494133(+)$1	250	41	48	12.9863
caaagaa	chr12:2094037-2094298(-)$1	261	25	32	13.1917
GAAACAA	chr13:98013290-98013510(+)$1	220	199	206	12.8493
gaaagga	chr6:2293429-2293723(+)$1	294	31	38	12.3698
gaaauaa	chr6:45242289-45242553(-)$1	264	245	252	12.7808
gagagaa	chr20:1136820-1137061(+)$1	241	49	56	12.5753
CAAAGAA	chr3:121411282-121411518(-)$1	236	180	187	13.1917
gaaggaa	chr7:34428846-34429098(-)$1	252	119	126	13.6027
GAAGGAA	chr4:151773188-151773467(-)$1	279	77	84	13.6027
aaaagaa	chr15:25644893-25645144(-)$1	251	24	31	12.9863
caaagaa	chr6:129909355-129909601(-)$1	246	5	12	13.1917
GAAUGAA	chr15:34818868-34819158(-)$1	290	158	165	12.7808
GAAGGAA	chr1:55637953-55638214(-)$1	261	66	73	13.6027
GAAAGAA	chr1:214815104-214815353(+)$1	249	110	117	16.7534
GAAAGAA	chr10:70333885-70334125(+)$1	240	44	51	16.7534
GUAAGAA	chr10:19571848-19572067(+)$1	219	18	25	12.3013
UAAAGAA	chr3:196693004-196693262(-)$1	258	15	22	12.9178
GAAGGAA	chr17:55183919-55184153(+)$1	234	57	64	13.6027
GUAAGAA	chr2:109389364-109389602(+)$1	238	138	145	12.3013
GAAAUAA	chrX:106310291-106310566(-)$1	275	171	178	12.7808
gcaagaa	chr22:24771032-24771281(+)$1	249	67	74	12.3698
caaagaa	chr2:167124172-167124426(-)$1	254	215	222	13.1917
GAAAGAA	chr1:222838680-222839098(+)$1	418	306	313	16.7534
GAAAGAA	chr6:47949810-47950071(-)$1	261	212	219	16.7534
gaaaaaa	chr18:77124636-77124888(+)$1	252	59	66	12.9178
GCAAGAA	chr2:3475910-3476197(+)$1	287	0	7	12.3698
gaaagaa	chr7:111080985-111081256(-)$1	271	254	261	16.7534
gaaggaa	chr7:64458240-64458469(-)$1	229	65	72	13.6027
GAAGGAA	chr7:51176055-51176331(-)$1	276	55	62	13.6027
GAAAGAG	chr2:166898718-166898969(-)$1	251	60	67	12.0958
GAAAGUA	chr14:39716277-39716523(+)$1	246	8	15	12.1643
GAGAGAA	chr9:72892123-72892405(+)$1	282	269	276	12.5753
UAAAGAA	chr3:27490042-27490282(-)$1	240	97	104	12.9178
gacagaa	chr11:129705300-129705549(+)$1	249	64	71	12.5068
GAAAAAA	chr6:3314954-3315175(-)$1	221	172	179	12.9178
gaaggaa	chr4:770465-770766(-)$1	301	81	88	13.6027
gagagaa	chr3:53894828-53895069(+)$1	241	135	142	12.5753
GAAGgaa	chr16:74347252-74347525(-)$1	273	74	81	13.6027
gaaacaa	chr12:133500916-133501184(-)$1	268	3	10	12.8493
AAAAGAA	chr1:197073671-197073923(-)$1	252	64	71	12.9863
gcaagaa	chr5:1578305-1578573(-)$1	268	61	68	12.3698
GAAGGAA	chr14:32561100-32561382(+)$1	282	64	71	13.6027
gaaaaaa	chr2:188397317-188397570(+)$1	253	46	53	12.9178

#otherMatches

#Struct PSSM
:::::::	chr9:19276223-19276488(+)$1	265	30	37	12.7808
:::::::	chr13:75884787-75885051(-)$1	264	62	69	12.8493
eeeccc$	chr7:76220931-76221216(+)$1	285	44	51	12.3698
ffffff!	chr2:159329086-159329341(+)$1	255	55	62	12.9863
ee::::d	chr20:44517263-44517522(-)$1	259	92	99	13.1917
zzzzzzz	chr2:138749394-138749694(+)$1	300	138	145	16.7534
ee!!a""	chr16:87953668-87953921(-)$1	253	39	46	13.1917
yyyyyyy	chr16:23647209-23647491(-)$1	282	64	71	16.7534
a[ccc&&	chr4:107074523-107074789(-)$1	266	0	7	12.5068
YGGGGGG	chr16:18861541-18861831(-)$1	290	201	208	12.3698
eeeeemm	chr18:9257128-9257427(+)$1	299	202	209	12.0958
CCKKDDD	chr3:99567879-99568152(-)$1	273	23	30	12.9178
fffffff	chr12:133503594-133503846(-)$1	252	57	64	13.6027
FFYYCCC	chr20:45256930-45257189(-)$1	259	244	251	12.5068
BBCCC::	chr15:65974776-65975038(-)$1	262	83	90	13.6027
dd!!iii	chr2:128259796-128260030(-)$1	234	37	44	13.1917
=======	chr7:99634369-99634607(+)$1	238	52	59	12.3698
:::::::	chr2:71650208-71650512(+)$1	304	132	139	12.3698
^^^^^^^	chr2:99742460-99742754(-)$1	294	49	56	12.9178
bb]dddd	chr17:65850007-65850265(+)$1	258	91	98	12.2328
nnnnna]	chr6:2339885-2340211(+)$1	326	277	284	12.9178
FFF}CCC	chr2:188355568-188355825(-)$1	257	69	76	13.6027
:::::::	chr2:167142762-167143028(-)$1	266	3	10	16.7534
GGGGGG:	chr10:133762882-133763118(+)$1	236	2	9	12.5753
CCNNNNN	chr1:155451381-155451637(-)$1	256	94	101	16.7534
:::::::	chr3:37368969-37369253(+)$1	284	5	12	16.7534
gggggg2	chr2:61632744-61633005(-)$1	261	69	76	13.6027
IIIIIII	chr8:94747958-94748209(-)$1	251	4	11	12.0273
f>>>>>>	chr2:159404443-159404710(+)$1	267	194	201	12.8493
zzzzzzz	chr17:49328507-49328739(-)$1	232	54	61	16.7534
EEE{FFF	chr2:170493883-170494133(+)$1	250	41	48	12.9863
::::EEE	chr12:2094037-2094298(-)$1	261	25	32	13.1917
oooobb3	chr13:98013290-98013510(+)$1	220	199	206	12.8493
eennnnn	chr6:2293429-2293723(+)$1	294	31	38	12.3698
dddmmmm	chr6:45242289-45242553(-)$1	264	245	252	12.7808
22bb:::	chr20:1136820-1137061(+)$1	241	49	56	12.5753
ddddnnn	chr3:121411282-121411518(-)$1	236	180	187	13.1917
==[bb[e	chr7:34428846-34429098(-)$1	252	119	126	13.6027
""cccmm	chr4:151773188-151773467(-)$1	279	77	84	13.6027
:::::::	chr15:25644893-25645144(-)$1	251	24	31	12.9863
::::ddd	chr6:129909355-129909601(-)$1	246	5	12	13.1917
ee]bbbb	chr15:34818868-34819158(-)$1	290	158	165	12.7808
hhhhh::	chr1:55637953-55638214(-)$1	261	66	73	13.6027
rrrrrrr	chr1:214815104-214815353(+)$1	249	110	117	16.7534
c]ccc::	chr10:70333885-70334125(+)$1	240	44	51	16.7534
:::::::	chr10:19571848-19572067(+)$1	219	18	25	12.3013
!!fffff	chr3:196693004-196693262(-)$1	258	15	22	12.9178
c''''''	chr17:55183919-55184153(+)$1	234	57	64	13.6027
=======	chr2:109389364-109389602(+)$1	238	138	145	12.3013
gggggg"	chrX:106310291-106310566(-)$1	275	171	178	12.7808
aoooooo	chr22:24771032-24771281(+)$1	249	67	74	12.3698
EEEE:::	chr2:167124172-167124426(-)$1	254	215	222	13.1917
qqqqqqq	chr1:222838680-222839098(+)$1	418	306	313	16.7534
::::BB}	chr6:47949810-47950071(-)$1	261	212	219	16.7534
dd:::::	chr18:77124636-77124888(+)$1	252	59	66	12.9178
bb$$$$$	chr2:3475910-3476197(+)$1	287	0	7	12.3698
E//////	chr7:111080985-111081256(-)$1	271	254	261	16.7534
GGGGGFF	chr7:64458240-64458469(-)$1	229	65	72	13.6027
bb!!a##	chr7:51176055-51176331(-)$1	276	55	62	13.6027
JJ:::hh	chr2:166898718-166898969(-)$1	251	60	67	12.0958
::::DDD	chr14:39716277-39716523(+)$1	246	8	15	12.1643
dddDDDD	chr9:72892123-72892405(+)$1	282	269	276	12.5753
cnnnnnc	chr3:27490042-27490282(-)$1	240	97	104	12.9178
!!ggggg	chr11:129705300-129705549(+)$1	249	64	71	12.5068
cxxxxxx	chr6:3314954-3315175(-)$1	221	172	179	12.9178
c22bb::	chr4:770465-770766(-)$1	301	81	88	13.6027
gBB}CCC	chr3:53894828-53895069(+)$1	241	135	142	12.5753
dddd000	chr16:74347252-74347525(-)$1	273	74	81	13.6027
:::::::	chr12:133500916-133501184(-)$1	268	3	10	12.8493
:::::::	chr1:197073671-197073923(-)$1	252	64	71	12.9863
ee:::::	chr5:1578305-1578573(-)$1	268	61	68	12.3698
ggg[ccc	chr14:32561100-32561382(+)$1	282	64	71	13.6027
qqqqqqq	chr2:188397317-188397570(+)$1	253	46	53	12.9178

#DB
.......	chr9:19276223-19276488(+)$1	1	30	37	12.7808
.......	chr13:75884787-75885051(-)$1	1	62	69	12.8493
)))(((.	chr7:76220931-76221216(+)$1	1	44	51	12.3698
((((((.	chr2:159329086-159329341(+)$1	1	55	62	12.9863
))....(	chr20:44517263-44517522(-)$1	1	92	99	13.1917
.......	chr2:138749394-138749694(+)$1	1	138	145	16.7534
((..(..	chr16:87953668-87953921(-)$1	1	39	46	13.1917
.......	chr16:23647209-23647491(-)$1	1	64	71	16.7534
(.(((..	chr4:107074523-107074789(-)$1	1	0	7	12.5068
.))))))	chr16:18861541-18861831(-)$1	1	201	208	12.3698
(((((..	chr18:9257128-9257427(+)$1	1	202	209	12.0958
((..(((	chr3:99567879-99568152(-)$1	1	23	30	12.9178
))))(((	chr12:133503594-133503846(-)$1	1	57	64	13.6027
))..)))	chr20:45256930-45257189(-)$1	1	244	251	12.5068
(((((..	chr15:65974776-65975038(-)$1	1	83	90	13.6027
((..(((	chr2:128259796-128260030(-)$1	1	37	44	13.1917
(((((((	chr7:99634369-99634607(+)$1	1	52	59	12.3698
.......	chr2:71650208-71650512(+)$1	1	132	139	12.3698
.......	chr2:99742460-99742754(-)$1	1	49	56	12.9178
)).))))	chr17:65850007-65850265(+)$1	1	91	98	12.2328
.....).	chr6:2339885-2340211(+)$1	1	277	284	12.9178
))).)))	chr2:188355568-188355825(-)$1	1	69	76	13.6027
.......	chr2:167142762-167143028(-)$1	1	3	10	16.7534
((((((.	chr10:133762882-133763118(+)$1	1	2	9	12.5753
((.....	chr1:155451381-155451637(-)$1	1	94	101	16.7534
.......	chr3:37368969-37369253(+)$1	1	5	12	16.7534
)))))).	chr2:61632744-61633005(-)$1	1	69	76	13.6027
(((((((	chr8:94747958-94748209(-)$1	1	4	11	12.0273
)......	chr2:159404443-159404710(+)$1	1	194	201	12.8493
.......	chr17:49328507-49328739(-)$1	1	54	61	16.7534
(((.(((	chr2:170493883-170494133(+)$1	1	41	48	12.9863
....(((	chr12:2094037-2094298(-)$1	1	25	32	13.1917
....)).	chr13:98013290-98013510(+)$1	1	199	206	12.8493
((.....	chr6:2293429-2293723(+)$1	1	31	38	12.3698
(((....	chr6:45242289-45242553(-)$1	1	245	252	12.7808
..))...	chr20:1136820-1137061(+)$1	1	49	56	12.5753
((((...	chr3:121411282-121411518(-)$1	1	180	187	13.1917
((.((.(	chr7:34428846-34429098(-)$1	1	119	126	13.6027
..(((..	chr4:151773188-151773467(-)$1	1	77	84	13.6027
.......	chr15:25644893-25645144(-)$1	1	24	31	12.9863
....(((	chr6:129909355-129909601(-)$1	1	5	12	13.1917
)).))))	chr15:34818868-34819158(-)$1	1	158	165	12.7808
)))))..	chr1:55637953-55638214(-)$1	1	66	73	13.6027
.......	chr1:214815104-214815353(+)$1	1	110	117	16.7534
).)))..	chr10:70333885-70334125(+)$1	1	44	51	16.7534
.......	chr10:19571848-19572067(+)$1	1	18	25	12.3013
..(((((	chr3:196693004-196693262(-)$1	1	15	22	12.9178
(......	chr17:55183919-55184153(+)$1	1	57	64	13.6027
(((((((	chr2:109389364-109389602(+)$1	1	138	145	12.3013
((((((.	chrX:106310291-106310566(-)$1	1	171	178	12.7808
(......	chr22:24771032-24771281(+)$1	1	67	74	12.3698
))))...	chr2:167124172-167124426(-)$1	1	215	222	13.1917
.......	chr1:222838680-222839098(+)$1	1	306	313	16.7534
....)).	chr6:47949810-47950071(-)$1	1	212	219	16.7534
)).....	chr18:77124636-77124888(+)$1	1	59	66	12.9178
((.....	chr2:3475910-3476197(+)$1	1	0	7	12.3698
)......	chr7:111080985-111081256(-)$1	1	254	261	16.7534
(((((((	chr7:64458240-64458469(-)$1	1	65	72	13.6027
((..(..	chr7:51176055-51176331(-)$1	1	55	62	13.6027
((...((	chr2:166898718-166898969(-)$1	1	60	67	12.0958
....(((	chr14:39716277-39716523(+)$1	1	8	15	12.1643
)))))))	chr9:72892123-72892405(+)$1	1	269	276	12.5753
(.....)	chr3:27490042-27490282(-)$1	1	97	104	12.9178
..(((((	chr11:129705300-129705549(+)$1	1	64	71	12.5068
(......	chr6:3314954-3315175(-)$1	1	172	179	12.9178
)..))..	chr4:770465-770766(-)$1	1	81	88	13.6027
))).)))	chr3:53894828-53895069(+)$1	1	135	142	12.5753
))))...	chr16:74347252-74347525(-)$1	1	74	81	13.6027
.......	chr12:133500916-133501184(-)$1	1	3	10	12.8493
.......	chr1:197073671-197073923(-)$1	1	64	71	12.9863
)).....	chr5:1578305-1578573(-)$1	1	61	68	12.3698
(((.(((	chr14:32561100-32561382(+)$1	1	64	71	13.6027
.......	chr2:188397317-188397570(+)$1	1	46	53	12.9178

#PSSM
G : 0.49	g : 0.31	c : 0.05	C : 0.04	U : 0.04	a : 0.02	A : 0.02	
A : 0.54	a : 0.36	U : 0.02	c : 0.02	G : 0.01	C : 0.01	
A : 0.56	a : 0.32	g : 0.04	c : 0.02	U : 0.01	C : 0.01	G : 0.01	
A : 0.47	a : 0.32	G : 0.10	g : 0.06	U : 0.01	
G : 0.52	g : 0.31	a : 0.05	U : 0.02	c : 0.02	C : 0.02	u : 0.01	A : 0.01	
A : 0.56	a : 0.36	g : 0.02	G : 0.02	U : 0.01	
A : 0.56	a : 0.39	G : 0.02	C : 0.01	

#score	983.2739726027391
#seq	73
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_CDS_m1_run2.nuc.txt

#NT
UUUUUCUCCU	chr2:32713545-32713804(+)$1	259	77	87	18.6111
UUCUUUUCUU	chr3:122432158-122432420(+)$1	262	97	107	17.4074
UUUUGUUCUU	chr2:191523771-191524063(+)$1	292	20	30	17.0370
UUuuuuuguu	chr9:139279122-139279385(-)$1	263	247	257	18.4259
UGUUUCUUUU	chr18:6239754-6240004(-)$1	250	92	102	15.3703
UCUUUCUCUU	chr3:40571589-40571893(+)$1	304	88	98	18.1481
UUUCUAUCUU	chr17:61876826-61877065(+)$1	239	177	187	16.2962
UUUUUUUCUU	chr20:33026138-33026434(+)$1	296	70	80	21.7592
GUUUUCUCUU	chr6:37140652-37140914(+)$1	262	90	100	18.8888
UUUUUCUCAU	chr22:28256084-28256339(-)$1	255	96	106	18.4259
UUUUUAUUUU	chr1:97250498-97250746(+)$1	248	67	77	17.9629
UUUUUAUCUU	chr15:85641059-85641319(+)$1	260	8	18	20.8333
UUAUUCUCUU	chr4:107151389-107151719(-)$1	330	102	112	18.1481
AUUUUCUCUU	chr10:5494186-5494483(+)$1	297	101	111	18.7037
guuuucuuuu	chr15:78786129-78786389(+)$1	260	1	11	16.0185
UUUUUCUCUU	chr10:121336106-121336357(-)$1	251	11	21	22.6851
CUUUUCUUUU	chr17:48548188-48548500(+)$1	312	102	112	15.9259
CUUUUCUCUU	chr17:42960943-42961207(-)$1	264	88	98	18.7962
UUUUUUCCUU	chr15:63882722-63883013(+)$1	291	108	118	18.2407
UUUUUCCCUU	chr17:19809402-19809655(-)$1	253	164	174	19.1666
uguuucucuu	chr1:2492803-2493049(+)$1	246	88	98	18.2407
UUUUUUUCUU	chr14:75570577-75570812(-)$1	235	98	108	21.7592
UUUUUUUCCU	chr5:154305468-154305781(-)$1	313	88	98	17.6851
UUUUUCUCUC	chr1:155893335-155893596(-)$1	261	80	90	17.8703
UAUUUAUCUU	chr14:31809551-31809801(-)$1	250	68	78	16.2962
GUUUUCUGUU	chr2:233659347-233659601(+)$1	254	4	14	15.5555
UUCUUAUCUU	chr16:50258663-50258921(+)$1	258	79	89	16.4814
UUUUUCCCUU	chr3:105495230-105495509(-)$1	279	103	113	19.1666
UUUUUGCCUU	chr1:227235577-227235831(-)$1	254	10	20	17.3148
UUUUUCUUUU	chr12:32871446-32871715(+)$1	269	108	118	19.8148
UUUCUAUCUU	chrX:31200910-31201165(-)$1	255	30	40	16.2962
UUUUUUCCUU	chr13:37595600-37595854(-)$1	254	66	76	18.2407
UUUUUGUCCU	chr6:131199243-131199498(-)$1	255	43	53	16.7592
UUUUUUCCUU	chr3:9514807-9515053(+)$1	246	97	107	18.2407
UUUUUUUCUU	chr13:76134782-76135037(+)$1	255	81	91	21.7592
UUUUUGUGUU	chr4:71067861-71068137(+)$1	276	98	108	17.4999
AUUUUCUCUU	chr2:27534661-27534888(-)$1	227	55	65	18.7037
GUUUUGUCUU	chr17:16054807-16055050(-)$1	243	102	112	17.0370
UUUUUGCCUU	chr6:43038895-43039159(+)$1	264	95	105	17.3148
UUUUUGUCUU	chr16:15168546-15168837(-)$1	291	104	114	20.8333
UUUUUCUAUU	chr13:25912654-25912922(+)$1	268	96	106	19.0740
UUUUUCUCAU	chrX:24744938-24745185(+)$1	247	152	162	18.4259
UUUUUUUCUU	chr6:26448728-26449015(+)$1	287	83	93	21.7592
UUUUUCCUUU	chr1:6711513-6711772(-)$1	259	92	102	16.2962
UUUAUUUCUU	chr3:156870805-156871060(-)$1	255	94	104	17.1296
UUUUCCUUUU	chr2:61024065-61024347(+)$1	282	97	107	15.0925
UUUUUUUCUU	chr3:56682924-56683209(-)$1	285	28	38	21.7592
uuuuucuuuu	chr4:123249149-123249422(+)$1	273	51	61	19.8148
UUUUUCUUUU	chr8:17132119-17132434(+)$1	315	109	119	19.8148
UUCUUUUCUU	chr1:62582691-62582976(+)$1	285	91	101	17.4074
UUUUUUUCCU	chr5:32417732-32418065(-)$1	333	113	123	17.6851
cuuuucucuu	chr18:12986719-12987022(+)$1	303	64	74	18.7962
UUUUUCUGUU	chr16:14327882-14328151(+)$1	269	60	70	19.3518

#otherMatches

#Struct PSSM
=========[	chr4:40937047-40937299(-)$1	252	73	83	21.7592
JJJJJJJJJJ	chr2:32713545-32713804(+)$1	259	77	87	18.6111
==========	chr3:122432158-122432420(+)$1	262	97	107	17.4074
eeeppppppp	chr2:191523771-191524063(+)$1	292	20	30	17.0370
2bb22ggggg	chr9:139279122-139279385(-)$1	263	247	257	18.4259
2bb22ccc::	chr18:6239754-6240004(-)$1	250	92	102	15.3703
::::::::::	chr3:40571589-40571893(+)$1	304	88	98	18.1481
33bb]eeeee	chr17:61876826-61877065(+)$1	239	177	187	16.2962
!cccoooooo	chr20:33026138-33026434(+)$1	296	70	80	21.7592
::::GGGGGG	chr6:37140652-37140914(+)$1	262	90	100	18.8888
bpppppppbb	chr22:28256084-28256339(-)$1	255	96	106	18.4259
gggguuuuuu	chr1:97250498-97250746(+)$1	248	67	77	17.9629
=======ddd	chr15:85641059-85641319(+)$1	260	8	18	20.8333
^^^^^^^^^^	chr4:107151389-107151719(-)$1	330	102	112	18.1481
^^^^^^^^^^	chr10:5494186-5494483(+)$1	297	101	111	18.7037
FFFFF:::::	chr15:78786129-78786389(+)$1	260	1	11	16.0185
MMDDDDLLLG	chr10:121336106-121336357(-)$1	251	11	21	22.6851
:::cccoooo	chr17:48548188-48548500(+)$1	312	102	112	15.9259
::::::::::	chr17:42960943-42961207(-)$1	264	88	98	18.7962
PPPPPPPIII	chr15:63882722-63883013(+)$1	291	108	118	18.2407
[eeeee!!gg	chr17:19809402-19809655(-)$1	253	164	174	19.1666
^^^^^^^^^^	chr1:2492803-2493049(+)$1	246	88	98	18.2407
iiiiiii::F	chr14:75570577-75570812(-)$1	235	98	108	21.7592
qqqqqqqccc	chr5:154305468-154305781(-)$1	313	88	98	17.6851
:::cccqqqq	chr1:155893335-155893596(-)$1	261	80	90	17.8703
dd"""hhhhh	chr14:31809551-31809801(-)$1	250	68	78	16.2962
EEEEEMMMMF	chr2:233659347-233659601(+)$1	254	4	14	15.5555
!!bbeeeee)	chr16:50258663-50258921(+)$1	258	79	89	16.4814
::dddd!!dd	chr3:105495230-105495509(-)$1	279	103	113	19.1666
%%%%%ccc$$	chr1:227235577-227235831(-)$1	254	10	20	17.3148
iiii!!bb!!	chr12:32871446-32871715(+)$1	269	108	118	19.8148
::::dddd!!	chrX:31200910-31201165(-)$1	255	30	40	16.2962
EEE:::::::	chr13:37595600-37595854(-)$1	254	66	76	18.2407
MMMMFFFFFF	chr6:131199243-131199498(-)$1	255	43	53	16.7592
iiiii(((((	chr3:9514807-9515053(+)$1	246	97	107	18.2407
^^^^^^^^^^	chr13:76134782-76135037(+)$1	255	81	91	21.7592
pppppppeee	chr4:71067861-71068137(+)$1	276	98	108	17.4999
WWWWWWWWWF	chr2:27534661-27534888(-)$1	227	55	65	18.7037
cc$$$$$ddd	chr17:16054807-16055050(-)$1	243	102	112	17.0370
DDDD{EEEEE	chr6:43038895-43039159(+)$1	264	95	105	17.3148
==========	chr16:15168546-15168837(-)$1	291	104	114	20.8333
%%%%dddd!!	chr13:25912654-25912922(+)$1	268	96	106	19.0740
eeeeeeeeeo	chrX:24744938-24745185(+)$1	247	152	162	18.4259
::::::::::	chr6:26448728-26449015(+)$1	287	83	93	21.7592
:::GGGGGGG	chr1:6711513-6711772(-)$1	259	92	102	16.2962
GGGGGKKEEE	chr3:156870805-156871060(-)$1	255	94	104	17.1296
FFFFBB::::	chr2:61024065-61024347(+)$1	282	97	107	15.0925
::::::::::	chr3:56682924-56683209(-)$1	285	28	38	21.7592
c]dddd::::	chr4:123249149-123249422(+)$1	273	51	61	19.8148
++++++++++	chr8:17132119-17132434(+)$1	315	109	119	19.8148
ffff::::::	chr1:62582691-62582976(+)$1	285	91	101	17.4074
::::::::::	chr5:32417732-32418065(-)$1	333	113	123	17.6851
c:::::::::	chr18:12986719-12987022(+)$1	303	64	74	18.7962
:::::::GGG	chr16:14327882-14328151(+)$1	269	60	70	19.3518

#DB
(((((((((.	chr4:40937047-40937299(-)$1	1	73	83	21.7592
((((((((((	chr2:32713545-32713804(+)$1	1	77	87	18.6111
))))))))))	chr3:122432158-122432420(+)$1	1	97	107	17.4074
(((.......	chr2:191523771-191524063(+)$1	1	20	30	17.0370
.))..)))))	chr9:139279122-139279385(-)$1	1	247	257	18.4259
.))..)))..	chr18:6239754-6240004(-)$1	1	92	102	15.3703
..........	chr3:40571589-40571893(+)$1	1	88	98	18.1481
..)).)))))	chr17:61876826-61877065(+)$1	1	177	187	16.2962
.(((......	chr20:33026138-33026434(+)$1	1	70	80	21.7592
....((((((	chr6:37140652-37140914(+)$1	1	90	100	18.8888
(.......))	chr22:28256084-28256339(-)$1	1	96	106	18.4259
((((......	chr1:97250498-97250746(+)$1	1	67	77	17.9629
((((((((((	chr15:85641059-85641319(+)$1	1	8	18	20.8333
..........	chr4:107151389-107151719(-)$1	1	102	112	18.1481
..........	chr10:5494186-5494483(+)$1	1	101	111	18.7037
(((((.....	chr15:78786129-78786389(+)$1	1	1	11	16.0185
..((((...(	chr10:121336106-121336357(-)$1	1	11	21	22.6851
...(((....	chr17:48548188-48548500(+)$1	1	102	112	15.9259
..........	chr17:42960943-42961207(-)$1	1	88	98	18.7962
.......(((	chr15:63882722-63883013(+)$1	1	108	118	18.2407
.(((((..((	chr17:19809402-19809655(-)$1	1	164	174	19.1666
..........	chr1:2492803-2493049(+)$1	1	88	98	18.2407
)))))))..)	chr14:75570577-75570812(-)$1	1	98	108	21.7592
.......)))	chr5:154305468-154305781(-)$1	1	88	98	17.6851
...(((....	chr1:155893335-155893596(-)$1	1	80	90	17.8703
((...(((((	chr14:31809551-31809801(-)$1	1	68	78	16.2962
(((((....(	chr2:233659347-233659601(+)$1	1	4	14	15.5555
..(((((((.	chr16:50258663-50258921(+)$1	1	79	89	16.4814
..((((..((	chr3:105495230-105495509(-)$1	1	103	113	19.1666
.....(((..	chr1:227235577-227235831(-)$1	1	10	20	17.3148
((((..((..	chr12:32871446-32871715(+)$1	1	108	118	19.8148
....((((..	chrX:31200910-31201165(-)$1	1	30	40	16.2962
(((.......	chr13:37595600-37595854(-)$1	1	66	76	18.2407
....((((((	chr6:131199243-131199498(-)$1	1	43	53	16.7592
(((((.....	chr3:9514807-9515053(+)$1	1	97	107	18.2407
..........	chr13:76134782-76135037(+)$1	1	81	91	21.7592
.......)))	chr4:71067861-71068137(+)$1	1	98	108	17.4999
.........(	chr2:27534661-27534888(-)$1	1	55	65	18.7037
((.....(((	chr17:16054807-16055050(-)$1	1	102	112	17.0370
((((.(((((	chr6:43038895-43039159(+)$1	1	95	105	17.3148
((((((((((	chr16:15168546-15168837(-)$1	1	104	114	20.8333
....((((..	chr13:25912654-25912922(+)$1	1	96	106	19.0740
))))(((((.	chrX:24744938-24745185(+)$1	1	152	162	18.4259
..........	chr6:26448728-26449015(+)$1	1	83	93	21.7592
...)))))))	chr1:6711513-6711772(-)$1	1	92	102	16.2962
(((((..(((	chr3:156870805-156871060(-)$1	1	94	104	17.1296
((((((....	chr2:61024065-61024347(+)$1	1	97	107	15.0925
..........	chr3:56682924-56683209(-)$1	1	28	38	21.7592
).))))....	chr4:123249149-123249422(+)$1	1	51	61	19.8148
..........	chr8:17132119-17132434(+)$1	1	109	119	19.8148
))))......	chr1:62582691-62582976(+)$1	1	91	101	17.4074
..........	chr5:32417732-32418065(-)$1	1	113	123	17.6851
).........	chr18:12986719-12987022(+)$1	1	64	74	18.7962
.......(((	chr16:14327882-14328151(+)$1	1	60	70	19.3518

#PSSM
U : 0.77	u : 0.05	G : 0.05	A : 0.03	C : 0.03	g : 0.01	c : 0.01	
U : 0.85	u : 0.07	G : 0.01	C : 0.01	g : 0.01	A : 0.01	
U : 0.81	u : 0.11	C : 0.05	A : 0.01	
U : 0.83	u : 0.11	C : 0.03	A : 0.01	
U : 0.85	u : 0.11	G : 0.01	C : 0.01	
C : 0.40	U : 0.25	A : 0.11	G : 0.11	c : 0.07	u : 0.03	
U : 0.74	C : 0.14	u : 0.11	
C : 0.68	U : 0.12	c : 0.05	G : 0.05	u : 0.03	g : 0.01	A : 0.01	
U : 0.77	u : 0.11	C : 0.07	A : 0.03	
U : 0.87	u : 0.11	C : 0.01	

#score	993.888888888888
#seq	54
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_UTR_m1_run1.nuc.txt

#NT
ACCCCAAAGGCUCUUUUAAGAGCCACUUAAAUUAUCGAUAUUAG	chr6:27114050-27114338(-)$1	288	170	214	64.2297
AAAUCAAAGGCCCUUUUCAGGGCCGCCCACAGUUUUCCGCAAAA	chr6:26205091-26205348(+)$1	257	129	173	59.1621
ACUCCAAAGGCUCUUUUCAGAGCCACCCACCUAAUCACUAGAAA	chr1:149857670-149857939(-)$1	269	178	222	74.6351
ACCCCAAAGGCUCUUUUAAGAGCCACCCAGAUACCCACUAAAAG	chr6:26123600-26123855(-)$1	255	132	176	71.3243
ACCCCAAAGGCUCUUUUCAGAGCCACUCAGUCUUCCCAAAGAGA	chr6:27806730-27806944(+)$1	214	129	173	71.3243
AUCCCAAAGGCUCUUUUAAGAGCCACCCACUUUUUCAGCUAUAG	chr6:26200065-26200292(+)$1	227	122	166	73.0135
AGACAAAAGGCUCUUUUCAGAGCCACCCACCAUUUCUACGGAAG	chr6:27860378-27860621(-)$1	243	116	160	70.4459
AAACAAAAGGCUCUUUUCAGAGCCACCUACCGUCUCAGAAAAAG	chr6:25726191-25726442(-)$1	251	123	167	73.0810
AACCCAAAGGCUCUUUUCAGAGCCCCCCUACCGUUUCAAAGGAA	chr6:26124816-26125063(+)$1	247	72	116	62.8783
AAACCAACGGCUCUUUUCAGGGCCACCCACGUCUUCUCUAAAAG	chr6:27101136-27101368(+)$1	232	149	193	73.4864
GCCCCAAAGGCUCUUUUCAGAGCCACCCAGAGACCUCUAAAAAA	chr6:27834471-27834760(-)$1	289	162	206	63.7567
AAAUCAAAGGCCCUUUUCAGGGCCGCCCACAGUUUUCCGCAAAA	chr6:26205025-26205291(+)$1	266	195	239	59.1621
AUUGAAAAGGCUCUUUUCAGAGCCACUCACAAUUUCACUUAAAA	chr6:26045961-26046195(+)$1	234	107	151	67.8783
AACCCAAAGGCUCUUUUCAGAGCCACCCACACGAUCAAGAAAGG	chr1:228646099-228646358(+)$1	259	131	175	75.9189
ACUCAAAAGGCUCUUUUCAGAGCCACCCACGUUUUCAAAUAAAA	chr1:149813687-149813993(-)$1	306	180	224	76.7972
ACCCCAAAGGCUCUUUUCAGAGCCACUCAGUCUUCCCAAAGAGA	chr6:27806700-27806930(+)$1	230	159	203	71.3243
AACCCAAAGGCUCUUUUCAGAGCCCCCCUACCGUUUCAAAGGAA	chr6:26124750-26124979(+)$1	229	138	182	62.8783
AACCCAAAGGCUCUUUUCAGAGCCACUUAAUGAUUUCAAUUAAG	chr6:26252152-26252401(+)$1	249	122	166	66.5945
ACUCCAAAGGCUCUUUUCAGAGCCACCCACCUAAUCACUAGAAA	chr1:149857633-149857849(-)$1	216	88	132	74.6351
CUUCCAAAGGCUCUUUUCAGAGCCACUUACAUUCUCACUGAGGA	chr6:27858058-27858280(-)$1	222	159	203	63.6216
CUUCCAAAGGCUCUUUUCAGAGCCACUUACAUUCUCACUGAGGA	chr6:27858039-27858258(-)$1	219	137	181	63.6216
AAACCAAAGGCUCUUUUCAGAGCCACCCACCUUUUCUGUAAAGU	chr6:26217459-26217694(+)$1	235	177	221	79.8378
CAACCAAAGGCCCUUUUCAGGGCCGCCCACUUUUUUCAUAAAAG	chr6:26285277-26285486(-)$1	209	104	148	68.6216
CAACCAAAGGCCCUUUUCAGGGCCGCCCACUUUUUUCAUAAAAG	chr6:26285248-26285477(-)$1	229	95	139	68.6216
AACCCAAAGGCCCUUUUCAGGGCCGCUCACAAAGUCGUUUAAAG	chr6:26104348-26104600(+)$1	252	188	232	60.3783
AAUCCAAAGGCUCUUUUCAGAGCCACUCACGCUUCCAGAGAAAG	chr6:27861507-27861762(+)$1	255	132	176	74.4999
AACUCAAAGGCUCUUUUCAGAGCCACUCAAGUCUCACAUAAAGA	chr6:26216372-26216576(-)$1	204	107	151	68.2837
CUUCCAAAGGCUCUUUUCAGAGCCACUUACAUUCUCACUGAGGA	chr6:27857994-27858239(-)$1	245	118	162	63.6216
AGACCAAAGGCUCUUUUUAGAGCCACCCAAGUUUUCAAAAAAAG	chr1:149858807-149859059(+)$1	252	125	169	76.5270
AUCCCAAAGGCUCUUUUAAGAGCCACCCACUUUUUCAGCUAUAG	chr6:26200104-26200315(+)$1	211	83	127	73.0135
AUCCCAAAGGCUCUUUUAAGAGCCACCCACUUUUUCAGCUAUAG	chr6:26200092-26200300(+)$1	208	95	139	73.0135
UUAACAAAGGCUCUUUUCAGAGCCACCCAUGUAUUCCUUAAAAG	chr6:26198977-26199246(-)$1	269	206	250	69.3648
GAACCAAAGGCUCUUUUCAGAGCCACCUACAAUUUUGUGGAAGA	chr6:27776274-27776518(+)$1	244	142	186	65.3108
ACCAAAAAGGUUCUUUUCAGAGCCACCUACUUUUUCACCAAGUA	chr6:27805558-27805834(-)$1	276	148	192	61.8648
AACCCAAAGGCUCUUUUCAGAGCCACUCACUAUUAUCUAAAGAA	chr6:27775158-27775403(-)$1	245	118	162	71.0540
ACCCCAAAGGCUCUUUUCAGAGCCACUUCAGUAAUCGAGAAAGC	chr1:149783334-149783576(-)$1	242	113	157	62.3378
AUCCCAAAGGCUCUUUUAAGAGCCACGCAUGUUUUCAAUAAAUG	chr6:26158665-26158934(+)$1	269	141	185	72.4054
ACCCCAAAGGCUCUUUUCAGAGCCACUCAGUCUUCCCAAAGAGA	chr6:27806765-27806972(+)$1	207	94	138	71.3243
AAACCAAAGGCUCUUUUCAGAGCCACCCACCUUUUCUGUAAAGU	chr6:26217542-26217749(+)$1	207	94	138	79.8378
AACCCAAAGGCUCUUUUCAGAGCCCCCCUACCGUUUCAAAGGAA	chr6:26124779-26125000(+)$1	221	109	153	62.8783
ACCCCAAAGGCUCUUUUAAGAGCCACCAAAGUGUCAAAUGAAGG	chr1:149858918-149859185(-)$1	267	139	183	64.3648
AGACAAAAGGCUCUUUUCAGAGCCACCCACCAUUUCUACGGAAG	chr6:27860421-27860671(-)$1	250	166	210	70.4459
AACCCAAAGGCUCUUUUCAGAGCCACUUAAACAUACUGAAACAG	chr6:25727464-25727672(+)$1	208	80	124	66.3243
GACAUAAAGGCUCUUUUCAGAGCCACCUACUAUCUCGAGAAAAG	chr1:228644966-228645204(-)$1	238	111	155	65.9864
AAACCAACGGCUCUUUUCAGGGCCACCCACGUCUUCUCUAAAAG	chr6:27101168-27101387(+)$1	219	117	161	73.4864
AACCCAAAGGCUCUUUUCAGAGCCACCCACCGCUCUCAGUAAAA	chr6:26157167-26157441(+)$1	274	147	191	72.1351
AACCCAAAGGCUCUUUUCAGAGCCACCUACUUUGUCACAAGGAG	chr6:26043355-26043591(-)$1	236	108	152	74.2297
ACCCAAAAGGCUCUUUUCAGAGCCACCACUGAUCUCAAUAAAAG	chr6:26055872-26056103(-)$1	231	108	152	68.4189
ACCCCAAAGGCUCUUUUCAGAGCCACUCAGUCUUCCCAAAGAGA	chr6:27806744-27806965(+)$1	221	115	159	71.3243
AAUACAACGGCUCUUUUCAGAGCCACCUACUAUUUCUGCGGGAG	chr6:27833422-27833675(+)$1	253	125	169	61.3243
AAACCAAAGGCUCUUUUCAGAGCCACCCACCUUUUCUGUAAAGU	chr6:26217549-26217763(+)$1	214	87	131	79.8378
CAAGCAAAGGCUCUUUUCAGAGCCACCACCUUUUCAAGUAAAGU	chr6:26020995-26021279(+)$1	284	156	200	60.8513
ACUCCAAAGGCUCUUUUCAGAGCCACCCACCUAAUCACUAGAAA	chr1:149857649-149857870(-)$1	221	109	153	74.6351
AAACCAACGGCUCUUUUCAGGGCCACCCACGUCUUCUCUAAAAG	chr6:27101187-27101414(+)$1	227	98	142	73.4864
AACCCAAAGGCUCUUUUCAGAGCCACCCACUUAUUCCAACGAAA	chr6:26031720-26031964(-)$1	244	116	160	78.3513
ACCCCAAAGGCUCUUUUAAGAGCCACCCAGAUACCCACUAAAAG	chr6:26123595-26123800(-)$1	205	77	121	71.3243
ACCCCAAAGGCUCUUUUCAGAGCCACUCAGUCUUCCCAAAGAGA	chr6:27806772-27806986(+)$1	214	87	131	71.3243
AAUCCAAAGGCUCUUUUCAGAGCCACUCACGCUUCCAGAGAAAG	chr6:27861562-27861766(+)$1	204	77	121	74.4999
AACCCAAAGGCUCUUUUCAGAGCCCCCCUACCGUUUCAAAGGAA	chr6:26124801-26125016(+)$1	215	87	131	62.8783
AAACCAAAGGCUCUUUUCAGAGCCACCCACCUUUUCUGUAAAGU	chr6:26217501-26217742(+)$1	241	135	179	79.8378
AAACCAAAGGCUCUUUUCAGAGCCACCAACAAUUUCAGUUGAAA	chr6:26250269-26250527(-)$1	258	131	175	74.7702
AAACCAAAGGCUCUUUUCAGAGCCACCCACCUUUUCUGUAAAGU	chr6:26217494-26217701(+)$1	207	142	186	79.8378
UACCCAAAGGCUCUUUUCAGAGCCACCCACAUGCGCGCUGAAAA	chr6:27778156-27778366(+)$1	210	129	173	69.0945
AACCCAAAGGCUCUUUUCAGAGCCACUUAAACAUACUGAAACAG	chr6:25727431-25727664(+)$1	233	113	157	66.3243
AACUCAAAGGCUCUUUUCAGAGCCACUCAAGUCUCACAUAAAGA	chr6:26216376-26216595(-)$1	219	126	170	68.2837
CAACCAAAGGCCCUUUUCAGGGCCGCCCACUUUUUUCAUAAAAG	chr6:26285310-26285531(-)$1	221	149	193	68.6216
AUCCCAAAGGCUCUUUUAAGAGCCACCCACUUUUUCAGCUAUAG	chr6:26200100-26200304(+)$1	204	87	131	73.0135
ACCCAAAAGGCUCUUUUCAGAGCCACCACUGAUCUCAAUAAAAG	chr6:26055910-26056117(-)$1	207	122	166	68.4189
CAACCAAAGGCCCUUUUCAGGGCCGCCCACUUUUUUCAUAAAAG	chr6:26285290-26285510(-)$1	220	128	172	68.6216
AACUCAAAGGCUCUUUUCAGAGCCACUCAAGUCUCACAUAAAGA	chr6:26216342-26216572(-)$1	230	103	147	68.2837
GACAUAAAGGCUCUUUUCAGAGCCACCUACUAUCUCGAGAAAAG	chr1:228645004-228645246(-)$1	242	153	197	65.9864
ACCCAAAAGGCUCUUUUCAGAGCCACCACUGAUCUCAAUAAAAG	chr6:26055868-26056072(-)$1	204	77	121	68.4189
ACAGCAAAGGCUCUUUUCAGAGCCACCUACGACUUCCAUUAAAU	chr6:26033221-26033504(-)$1	283	155	199	69.6351

#otherMatches

#Struct PSSM
eee:::::ffffffmmmmffffff:::::::ddddlllddddBB	chr6:27100038-27100299(-)$1	261	176	220	65.6486
ssssssssdddd333ffffffbb]dddd>>>>>>>>>>>>dddd	chr6:27114050-27114338(-)$1	288	170	214	64.2297
::::::::ffffffmmmmffffff::::::::::::CCCYYFFF	chr6:26205091-26205348(+)$1	257	129	173	59.1621
mmmmccc:ffffffmmmmffffff::::::cccnnnnnccc:::	chr1:149857670-149857939(-)$1	269	178	222	74.6351
EEEEE:::ffffffmmmmffffff::::::::::ddddssssss	chr6:26123600-26123855(-)$1	255	132	176	71.3243
::::::::ffffffmmmmffffff:::ddddcccooooooccc]	chr6:27806730-27806944(+)$1	214	129	173	71.3243
::::::::ffffffmmmmffffff:::::::::::::CCC}HHH	chr6:26200065-26200292(+)$1	227	122	166	73.0135
::::::::ffffffmmmmffffff:::::::::cccmmmmccc:	chr6:27860378-27860621(-)$1	243	116	160	70.4459
::::::::ffffffmmmmffffff::::::::FFFFFF:::::e	chr6:25726191-25726442(-)$1	251	123	167	73.0810
::::::::ffffffmmmmffffffbb[eeeee&&&&&&&bb!!b	chr6:26124816-26125063(+)$1	247	72	116	62.8783
qqqqqqqqbbccc::::::DDDD~~~~CCCDDDDdddd''''''	chr6:27101136-27101368(+)$1	232	149	193	73.4864
::::::::ffffffmmmmffffffBBDDDDZZZCCCBB______	chr6:27834471-27834760(-)$1	289	162	206	63.7567
::::::::ffffffmmmmffffff:::CCC}GGGGGGGCCCYYG	chr6:26205025-26205291(+)$1	266	195	239	59.1621
oooccc::ffffffmmmmffffff::::ffffffuuuuuuuuuu	chr6:26045961-26046195(+)$1	234	107	151	67.8783
::::::::ffffffmmmmffffffdddd"""aooooooa333dd	chr1:228646099-228646358(+)$1	259	131	175	75.9189
dd%%%%%%ffffffmmmmffffff666666dddd]a:::::::e	chr1:149813687-149813993(-)$1	306	180	224	76.7972
::::::::ffffffmmmmffffff::::::ddddmmmmddddGG	chr6:27806700-27806930(+)$1	230	159	203	71.3243
++++++++ffffffmmmmffffff7777777ffffff333bb22	chr6:26124750-26124979(+)$1	229	138	182	62.8783
::::::::ffffffmmmmffffff:ffffffpppppppffffff	chr6:26252152-26252401(+)$1	249	122	166	66.5945
mmmmccc:ffffffmmmmffffff::::::::::EEEEE}A~~~	chr1:149857633-149857849(-)$1	216	88	132	74.6351
::::::::ffffffmmmmffffff::::::fffffflllfffff	chr6:27858058-27858280(-)$1	222	159	203	63.6216
::::::::ffffffmmmmffffff::::::fffffflllfffff	chr6:27858039-27858258(-)$1	219	137	181	63.6216
fff$$$$$ffffffmmmmffffff88888888ffffff:::::C	chr6:26217459-26217694(+)$1	235	177	221	79.8378
::::::::ffffffmmmmffffff::::::::::::::::::gg	chr6:26285277-26285486(-)$1	209	104	148	68.6216
::::::::ffffffmmmmffffff:::::eeeeennnnneeeee	chr6:26285248-26285477(-)$1	229	95	139	68.6216
::::::::ffffffmmmmffffff:ccc[ccc[a[eeeeerrrr	chr6:26104348-26104600(+)$1	252	188	232	60.3783
ee!!bb[hhhhhhhhccc[ddddpppppppdddd333ccc]hhh	chr6:27861507-27861762(+)$1	255	132	176	74.4999
::::::=========="""ccc[aooooooa]ccc4444=====	chr6:26216372-26216576(-)$1	204	107	151	68.2837
::::::::ffffffmmmmffffff::::::fffffflllfffff	chr6:27857994-27858239(-)$1	245	118	162	63.6216
:::==============[iiiiiiiii[dddd!!eeeee!!ccc	chr1:149858807-149859059(+)$1	252	125	169	76.5270
::::::::ffffffmmmmffffff:::::::::::::CCC}HHH	chr6:26200104-26200315(+)$1	211	83	127	73.0135
b&&&&&&&ffffffmmmmffffff88888888bb88888888cc	chr6:26200092-26200300(+)$1	208	95	139	73.0135
++++++++ffffffmmmmffffff55555ccc]==========:	chr6:26198977-26199246(-)$1	269	206	250	69.3648
cc::::::ffffffmmmmffffff::eeeeemmmmeeeee::::	chr6:27776274-27776518(+)$1	244	142	186	65.3108
ccc:::::ffffffmmmmffffff:::FFFFFFZZZIIIIIIII	chr6:27805558-27805834(-)$1	276	148	192	61.8648
KKDDDD::ffffffmmmmffffff:::::::::::::::::ggg	chr6:27775158-27775403(-)$1	245	118	162	71.0540
CCC:::::ffffffmmmmffffff::::::::::::::::::::	chr1:149783334-149783576(-)$1	242	113	157	62.3378
:DDDD:::ffffffmmmmffffff::::::::::::::::ffff	chr6:26158665-26158934(+)$1	269	141	185	72.4054
::::::::ffffffmmmmffffff::::::ddddmmmmddddGG	chr6:27806765-27806972(+)$1	207	94	138	71.3243
::::::::ffffffmmmmffffff::cccaddddnnnnndddd]	chr6:26217542-26217749(+)$1	207	94	138	79.8378
++++++++ffffffmmmmffffff7777777ffffff333bb22	chr6:26124779-26125000(+)$1	221	109	153	62.8783
:::==============[iiiiiiiii[dddd[eeeee[=====	chr1:149858918-149859185(-)$1	267	139	183	64.3648
::::::::ffffffmmmmffffff:::::::::cccmmmmccc:	chr6:27860421-27860671(-)$1	250	166	210	70.4459
::::::::ffffffmmmmffffff:::::::::::ccclllccc	chr6:25727464-25727672(+)$1	208	80	124	66.3243
b:::::::==========[ccctttttttttttccc22======	chr1:228644966-228645204(-)$1	238	111	155	65.9864
::::::::ffffffmmmmffffff:::::::ddddooooooddd	chr6:27101168-27101387(+)$1	219	117	161	73.4864
RRCCC:::ffffffmmmmffffff::dddd[ffffff!!ccc[b	chr6:26157167-26157441(+)$1	274	147	191	72.1351
::::::::ffffffmmmmffffff:::::eeeeellleeeeeGG	chr6:26043355-26043591(-)$1	236	108	152	74.2297
::::::::ffffffmmmmffffffbb[hhhhhhhhccc[eeeee	chr6:26055872-26056103(-)$1	231	108	152	68.4189
obb:::::ffffffmmmmffffff::::::ddddoooooodddd	chr6:27806744-27806965(+)$1	221	115	159	71.3243
:::::::==========eeeeettttttttttteeeee]=====	chr6:27833422-27833675(+)$1	253	125	169	61.3243
::::::::ffffffmmmmffffff::cccaddddnnnnndddd]	chr6:26217549-26217763(+)$1	214	87	131	79.8378
qqqqqqqqdddd4444ffffff22eeeee:dddd[dddd!!fff	chr6:26020995-26021279(+)$1	284	156	200	60.8513
ZZZBB:::ffffffmmmmffffff:cccdddd"""hhhhhhhh"	chr1:149857649-149857870(-)$1	221	109	153	74.6351
::::::::ffffffmmmmffffff:::::::ddddooooooddd	chr6:27101187-27101414(+)$1	227	98	142	73.4864
::::::::ffffffmmmmffffff::::::::::ccc"""dddd	chr6:26031720-26031964(-)$1	244	116	160	78.3513
EEEEE:::ffffffmmmmffffff::::::::::ddddssssss	chr6:26123595-26123800(-)$1	205	77	121	71.3243
::::::::ffffffmmmmffffff::::::ddddmmmmddddGG	chr6:27806772-27806986(+)$1	214	87	131	71.3243
ee!!bb[hhhhhhhhccc[ddddpppppppdddd333ccc]hhh	chr6:27861562-27861766(+)$1	204	77	121	74.4999
++++++++ffffffmmmmffffff7777777ffffff333bb22	chr6:26124801-26125016(+)$1	215	87	131	62.8783
fff$$$$$ffffffmmmmffffff88888888ffffff4444a]	chr6:26217501-26217742(+)$1	241	135	179	79.8378
KKCCC:::ffffffmmmmffffff::ddddpppppppdddd:::	chr6:26250269-26250527(-)$1	258	131	175	74.7702
fff$$$$$ffffffmmmmffffff88888888ffffff4444a]	chr6:26217494-26217701(+)$1	207	142	186	79.8378
::BBEEEEECCChhhhhhhh[bbbboooooobb]bb]hhhhhhh	chr6:27778156-27778366(+)$1	210	129	173	69.0945
::::::::ffffffmmmmffffff:::::::::::ccclllccc	chr6:25727431-25727664(+)$1	233	113	157	66.3243
::::::=========="""ccc[aooooooa]ccc4444=====	chr6:26216376-26216595(-)$1	219	126	170	68.2837
::::::::ffffffmmmmffffffbb"""eeeeennnnneeeee	chr6:26285310-26285531(-)$1	221	149	193	68.6216
GGGGG:::ffffffmmmmffffff:::::::::::eeeeemmmm	chr6:26200100-26200304(+)$1	204	87	131	73.0135
::::::::ffffffmmmmffffff:::::::::cccpppppppc	chr6:26055910-26056117(-)$1	207	122	166	68.4189
::::::::ffffffmmmmffffffbb"""eeeeennnnneeeee	chr6:26285290-26285510(-)$1	220	128	172	68.6216
eeeddddiiiiiiiii"""ccc[aooooooa]ccc4444iiiii	chr6:26216342-26216572(-)$1	230	103	147	68.2837
e&&&&&&&ffffffmmmmffffff55555eeeee22ccc:gggg	chr1:228645004-228645246(-)$1	242	153	197	65.9864
:DDDD:::ffffffmmmmffffffbb[hhhhhhhhccc[eeeee	chr6:26055868-26056072(-)$1	204	77	121	68.4189
GGGGG:::ffffffmmmmffffff::::::::::::ccclllcc	chr6:26033221-26033504(-)$1	283	155	199	69.6351

#DB
))).....((((((....)))))).......((((...))))))	chr6:27100038-27100299(-)$1	1	176	220	65.6486
........))))...)))))))).))))............))))	chr6:27114050-27114338(-)$1	1	170	214	64.2297
........((((((....))))))............)))..)))	chr6:26205091-26205348(+)$1	1	129	173	59.1621
....))).((((((....))))))......(((.....)))...	chr1:149857670-149857939(-)$1	1	178	222	74.6351
(((((...((((((....))))))..........((((......	chr6:26123600-26123855(-)$1	1	132	176	71.3243
........((((((....))))))...(((((((......))).	chr6:27806730-27806944(+)$1	1	129	173	71.3243
........((((((....)))))).............))).)))	chr6:26200065-26200292(+)$1	1	122	166	73.0135
........((((((....)))))).........(((....))).	chr6:27860378-27860621(-)$1	1	116	160	70.4459
........((((((....))))))........)))))).....(	chr6:25726191-25726442(-)$1	1	123	167	73.0810
........((((((....))))))((.(((((.......((..(	chr6:26124816-26125063(+)$1	1	72	116	62.8783
........)))))......))))....)))))))((((......	chr6:27101136-27101368(+)$1	1	149	193	73.4864
........((((((....))))))))))))...)))))......	chr6:27834471-27834760(-)$1	1	162	206	63.7567
........((((((....))))))...))).))))))))))..)	chr6:26205025-26205291(+)$1	1	195	239	59.1621
...)))..((((((....))))))....((((((..........	chr6:26045961-26046195(+)$1	1	107	151	67.8783
........((((((....))))))((((...(......)...))	chr1:228646099-228646358(+)$1	1	131	175	75.9189
((......((((((....))))))......)))).).......(	chr1:149813687-149813993(-)$1	1	180	224	76.7972
........((((((....))))))......((((....))))))	chr6:27806700-27806930(+)$1	1	159	203	71.3243
........((((((....)))))).......))))))...))..	chr6:26124750-26124979(+)$1	1	138	182	62.8783
........((((((....)))))).((((((.......))))))	chr6:26252152-26252401(+)$1	1	122	166	66.5945
....))).((((((....))))))..........))))).)...	chr1:149857633-149857849(-)$1	1	88	132	74.6351
........((((((....))))))......((((((...)))))	chr6:27858058-27858280(-)$1	1	159	203	63.6216
........((((((....))))))......((((((...)))))	chr6:27858039-27858258(-)$1	1	137	181	63.6216
(((.....((((((....))))))........)))))).....)	chr6:26217459-26217694(+)$1	1	177	221	79.8378
........((((((....))))))..................((	chr6:26285277-26285486(-)$1	1	104	148	68.6216
........((((((....)))))).....(((((.....)))))	chr6:26285248-26285477(-)$1	1	95	139	68.6216
........((((((....)))))).(((.(((.(.(((((....	chr6:26104348-26104600(+)$1	1	188	232	60.3783
((..((.(((((((((((.((((.......))))...))).)))	chr6:27861507-27861762(+)$1	1	132	176	74.4999
......((((((((((...(((.(......).)))....)))))	chr6:26216372-26216576(-)$1	1	107	151	68.2837
........((((((....))))))......((((((...)))))	chr6:27857994-27858239(-)$1	1	118	162	63.6216
...((((((((((((((.(((((((((.((((..(((((..(((	chr1:149858807-149859059(+)$1	1	125	169	76.5270
........((((((....)))))).............))).)))	chr6:26200104-26200315(+)$1	1	83	127	73.0135
(.......((((((....))))))........))........))	chr6:26200092-26200300(+)$1	1	95	139	73.0135
........((((((....)))))).....))).)))))))))).	chr6:26198977-26199246(-)$1	1	206	250	69.3648
))......((((((....))))))..(((((....)))))....	chr6:27776274-27776518(+)$1	1	142	186	65.3108
))).....((((((....))))))...))))))...))))))))	chr6:27805558-27805834(-)$1	1	148	192	61.8648
..((((..((((((....)))))).................(((	chr6:27775158-27775403(-)$1	1	118	162	71.0540
(((.....((((((....))))))....................	chr1:149783334-149783576(-)$1	1	113	157	62.3378
.))))...((((((....))))))................((((	chr6:26158665-26158934(+)$1	1	141	185	72.4054
........((((((....))))))......((((....))))))	chr6:27806765-27806972(+)$1	1	94	138	71.3243
........((((((....))))))..((((((((.....)))).	chr6:26217542-26217749(+)$1	1	94	138	79.8378
........((((((....)))))).......))))))...))..	chr6:26124779-26125000(+)$1	1	109	153	62.8783
...((((((((((((((.(((((((((.((((.(((((.(((((	chr1:149858918-149859185(-)$1	1	139	183	64.3648
........((((((....)))))).........(((....))).	chr6:27860421-27860671(-)$1	1	166	210	70.4459
........((((((....))))))...........(((...)))	chr6:25727464-25727672(+)$1	1	80	124	66.3243
).......((((((((((.(((...........)))..))))))	chr1:228644966-228645204(-)$1	1	111	155	65.9864
........((((((....)))))).......((((......)))	chr6:27101168-27101387(+)$1	1	117	161	73.4864
..(((...((((((....))))))..((((.((((((..(((.(	chr6:26157167-26157441(+)$1	1	147	191	72.1351
........((((((....)))))).....(((((...)))))))	chr6:26043355-26043591(-)$1	1	108	152	74.2297
........((((((....))))))((.(((((((((((.(((((	chr6:26055872-26056103(-)$1	1	108	152	68.4189
.)).....((((((....))))))......((((......))))	chr6:27806744-27806965(+)$1	1	115	159	71.3243
.......(((((((((((((((...........))))).)))))	chr6:27833422-27833675(+)$1	1	125	169	61.3243
........((((((....))))))..((((((((.....)))).	chr6:26217549-26217763(+)$1	1	87	131	79.8378
........))))....))))))..))))).((((.((((..(((	chr6:26020995-26021279(+)$1	1	156	200	60.8513
...))...((((((....)))))).(((((((...((((((((.	chr1:149857649-149857870(-)$1	1	109	153	74.6351
........((((((....)))))).......((((......)))	chr6:27101187-27101414(+)$1	1	98	142	73.4864
........((((((....))))))..........(((...((((	chr6:26031720-26031964(-)$1	1	116	160	78.3513
(((((...((((((....))))))..........((((......	chr6:26123595-26123800(-)$1	1	77	121	71.3243
........((((((....))))))......((((....))))))	chr6:27806772-27806986(+)$1	1	87	131	71.3243
((..((.(((((((((((.((((.......))))...))).)))	chr6:27861562-27861766(+)$1	1	77	121	74.4999
........((((((....)))))).......))))))...))..	chr6:26124801-26125016(+)$1	1	87	131	62.8783
(((.....((((((....))))))........))))))....).	chr6:26217501-26217742(+)$1	1	135	179	79.8378
..(((...((((((....))))))..((((.......))))...	chr6:26250269-26250527(-)$1	1	131	175	74.7702
(((.....((((((....))))))........))))))....).	chr6:26217494-26217701(+)$1	1	142	186	79.8378
..))))))))))((((((((.((((......)).)).)))))))	chr6:27778156-27778366(+)$1	1	129	173	69.0945
........((((((....))))))...........(((...)))	chr6:25727431-25727664(+)$1	1	113	157	66.3243
......((((((((((...(((.(......).)))....)))))	chr6:26216376-26216595(-)$1	1	126	170	68.2837
........((((((....))))))((...(((((.....)))))	chr6:26285310-26285531(-)$1	1	149	193	68.6216
(((((...((((((....))))))...........(((((....	chr6:26200100-26200304(+)$1	1	87	131	73.0135
........((((((....)))))).........(((.......)	chr6:26055910-26056117(-)$1	1	122	166	68.4189
........((((((....))))))((...(((((.....)))))	chr6:26285290-26285510(-)$1	1	128	172	68.6216
((((((((((((((((...(((.(......).)))....)))))	chr6:26216342-26216572(-)$1	1	103	147	68.2837
(.......((((((....)))))).....)))))..))).((((	chr1:228645004-228645246(-)$1	1	153	197	65.9864
.((((...((((((....))))))((.(((((((((((.(((((	chr6:26055868-26056072(-)$1	1	77	121	68.4189
(((((...((((((....))))))............(((...))	chr6:26033221-26033504(-)$1	1	155	199	69.6351

#PSSM
A : 0.81	C : 0.10	G : 0.05	U : 0.02	
A : 0.54	C : 0.28	U : 0.13	G : 0.04	
C : 0.54	A : 0.31	U : 0.14	
C : 0.82	U : 0.06	A : 0.06	G : 0.04	
C : 0.83	A : 0.12	U : 0.04	
A : 0.99	
A : 0.99	
A : 0.93	C : 0.06	
G : 0.99	
G : 0.99	
C : 0.98	U : 0.01	
U : 0.90	C : 0.09	
C : 0.99	
U : 0.99	
U : 0.99	
U : 0.99	
U : 0.99	
C : 0.85	A : 0.13	U : 0.01	
A : 0.99	
G : 0.99	
A : 0.86	G : 0.13	
G : 0.99	
C : 0.99	
C : 0.99	
A : 0.85	G : 0.09	C : 0.05	
C : 0.99	
C : 0.70	U : 0.28	G : 0.01	
C : 0.70	U : 0.21	A : 0.08	
A : 0.87	C : 0.06	U : 0.05	
C : 0.62	A : 0.18	G : 0.10	U : 0.08	
U : 0.29	G : 0.25	A : 0.22	C : 0.21	
U : 0.54	C : 0.18	A : 0.18	G : 0.08	
U : 0.62	A : 0.17	C : 0.10	G : 0.09	
U : 0.70	C : 0.18	A : 0.08	G : 0.02	
U : 0.72	C : 0.21	A : 0.04	G : 0.01	
C : 0.72	U : 0.20	A : 0.06	
A : 0.39	C : 0.33	U : 0.17	G : 0.09	
A : 0.47	C : 0.22	G : 0.22	U : 0.06	
U : 0.48	A : 0.29	G : 0.10	C : 0.10	
A : 0.64	G : 0.16	U : 0.14	C : 0.04	
A : 0.72	G : 0.24	U : 0.02	
A : 0.75	G : 0.14	U : 0.06	C : 0.02	
A : 0.68	G : 0.28	U : 0.02	
G : 0.48	A : 0.40	U : 0.09	C : 0.01	

#score	5152.594594594588
#seq	74
#width	44
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_CDS_m3_run2.nuc.txt

#NT
GCA	chr11:27400204-27400416(-)$1	212	21	24	8.9999
GCA	chr6:160455379-160455620(+)$1	241	118	121	8.9999
GCA	chr12:104333222-104333468(+)$1	246	117	120	8.9999
GCA	chr7:100276216-100276440(+)$1	224	17	20	8.9999
GCA	chr8:48751610-48751868(-)$1	258	23	26	8.9999
GCA	chr2:44128557-44128763(-)$1	206	43	46	8.9999
GCA	chr1:236208672-236208926(-)$1	254	20	23	8.9999
GCA	chr14:102506506-102506819(+)$1	313	53	56	8.9999
GCA	chr7:103155531-103155738(-)$1	207	11	14	8.9999
GCA	chr6:150114642-150114907(+)$1	265	223	226	8.9999
GCA	chr2:129025863-129026138(-)$1	275	26	29	8.9999
GCA	chr4:2935205-2935458(-)$1	253	88	91	8.9999
GCA	chr1:87368921-87369186(-)$1	265	70	73	8.9999
GCA	chr6:143823496-143823803(-)$1	307	112	115	8.9999
GCA	chr2:173340226-173340477(+)$1	251	103	106	8.9999
GCA	chr12:6696446-6696701(-)$1	255	3	6	8.9999
GCA	chr3:186503852-186504070(+)$1	218	135	138	8.9999
GCA	chr4:1902407-1902678(+)$1	271	26	29	8.9999
GCA	chr3:49166063-49166329(-)$1	266	22	25	8.9999
GCA	chr8:25193726-25193991(+)$1	265	65	68	8.9999
GCA	chr13:99040587-99040833(+)$1	246	12	15	8.9999
GCA	chr17:26962192-26962450(-)$1	258	52	55	8.9999
GCA	chr8:38884107-38884335(+)$1	228	29	32	8.9999
GCA	chr4:74315698-74315920(+)$1	222	7	10	8.9999
GCA	chr3:195781889-195782146(-)$1	257	55	58	8.9999
GCA	chr2:216230127-216230350(-)$1	223	159	162	8.9999
GCA	chr8:48701661-48701898(-)$1	237	208	211	8.9999
GCA	chr16:1872818-1873107(-)$1	289	1	4	8.9999
GCA	chr2:54856021-54856287(+)$1	266	138	141	8.9999
GCA	chr2:96964461-96964739(-)$1	278	78	81	8.9999
GCA	chr1:39926243-39926538(+)$1	295	4	7	8.9999
GCA	chr6:30690603-30690837(+)$1	234	94	97	8.9999
GCA	chr15:59189245-59189493(-)$1	248	85	88	8.9999
GCA	chr19:44130919-44131168(-)$1	249	29	32	8.9999
GCA	chr8:48697573-48697785(-)$1	212	153	156	8.9999
GCA	chr18:211079-211345(+)$1	266	15	18	8.9999
GCA	chr2:216274715-216274932(-)$1	217	201	204	8.9999
GCA	chr8:62593432-62593699(-)$1	267	22	25	8.9999
GCA	chr3:148902962-148903219(-)$1	257	31	34	8.9999
GCA	chr17:79804804-79805023(-)$1	219	177	180	8.9999
GCA	chr3:122864942-122865192(+)$1	250	18	21	8.9999
GCA	chr5:134124119-134124381(+)$1	262	5	8	8.9999
gCA	chr11:1774938-1775231(-)$1	293	43	46	8.9999
GCA	chr19:12768802-12769056(-)$1	254	48	51	8.9999
GCA	chr17:40630421-40630671(+)$1	250	88	91	8.9999
GCA	chr15:65822907-65823157(+)$1	250	0	3	8.9999
GCA	chr7:150773322-150773585(+)$1	263	66	69	8.9999
GCA	chr1:206903325-206903543(+)$1	218	197	200	8.9999
GCA	chr4:155506977-155507189(-)$1	212	88	91	8.9999
GCA	chr12:9243907-9244114(-)$1	207	2	5	8.9999
GCA	chr13:77730142-77730438(-)$1	296	269	272	8.9999
GCA	chr13:48827847-48828115(+)$1	268	145	148	8.9999
GCA	chr19:49119345-49119559(-)$1	214	23	26	8.9999
GCA	chr2:21238018-21238232(-)$1	214	15	18	8.9999
GCA	chr19:45412310-45412533(+)$1	223	31	34	8.9999
GCA	chr20:24952047-24952311(-)$1	264	46	49	8.9999
GCA	chr6:34389405-34389608(-)$1	203	112	115	8.9999
GCA	chr2:101869533-101869796(+)$1	263	11	14	8.9999
GCA	chr10:101556908-101557152(+)$1	244	31	34	8.9999
GCA	chr4:74315689-74315898(+)$1	209	16	19	8.9999
GCA	chr11:129980420-129980657(+)$1	237	48	51	8.9999
GCA	chrX:132670208-132670421(-)$1	213	36	39	8.9999
GCA	chr2:44176640-44176898(-)$1	258	72	75	8.9999
GCA	chr2:38545961-38546237(-)$1	276	158	161	8.9999
GCA	chr8:144898565-144898878(-)$1	313	33	36	8.9999
GCA	chr3:127379627-127379885(+)$1	258	36	39	8.9999
gca	chr11:125475421-125475697(+)$1	276	22	25	8.9999
GCA	chr16:84099991-84100251(-)$1	260	33	36	8.9999
GCA	chr7:103202003-103202254(-)$1	251	32	35	8.9999
GCA	chr17:7415437-7415686(+)$1	249	57	60	8.9999
GCA	chr2:219098974-219099219(+)$1	245	17	20	8.9999
GCA	chr19:6694456-6694683(-)$1	227	11	14	8.9999
GCA	chr10:79789061-79789345(-)$1	284	72	75	8.9999
GCA	chr6:160201966-160202236(-)$1	270	90	93	8.9999
GCA	chr6:137524616-137524917(-)$1	301	65	68	8.9999
GCA	chr15:64428424-64428698(+)$1	274	214	217	8.9999
GCA	chr4:187540477-187540724(-)$1	247	37	40	8.9999
GCA	chr11:66114169-66114444(-)$1	275	32	35	8.9999
GCA	chr2:220077043-220077314(-)$1	271	116	119	8.9999
GCA	chr6:32797622-32797881(-)$1	259	9	12	8.9999
GCA	chr11:66114244-66114476(-)$1	232	64	67	8.9999
GCA	chr16:11971283-11971538(-)$1	255	5	8	8.9999
GCA	chr3:186333460-186333673(+)$1	213	12	15	8.9999
GCA	chr19:7621343-7621555(+)$1	212	74	77	8.9999
GCA	chr12:6702255-6702495(-)$1	240	97	100	8.9999
GCA	chr12:64812717-64812975(+)$1	258	144	147	8.9999
GCA	chr5:140963590-140963877(-)$1	287	6	9	8.9999
GCA	chr11:118926371-118926656(-)$1	285	109	112	8.9999
GCA	chr3:133473237-133473440(+)$1	203	97	100	8.9999
GCA	chr5:176764605-176764887(-)$1	282	25	28	8.9999
GCA	chrX:153586714-153586979(-)$1	265	82	85	8.9999
GCA	chr17:26948371-26948617(-)$1	246	124	127	8.9999
GCA	chr15:44048785-44049038(+)$1	253	16	19	8.9999

#otherMatches

#Struct PSSM
fff	chr16:105731-105940(+)$1	209	41	44	8.9999
bb:	chr11:27400204-27400416(-)$1	212	21	24	8.9999
ddd	chr6:160455379-160455620(+)$1	241	118	121	8.9999
doo	chr12:104333222-104333468(+)$1	246	117	120	8.9999
bbq	chr7:100276216-100276440(+)$1	224	17	20	8.9999
ddd	chr8:48751610-48751868(-)$1	258	23	26	8.9999
bb]	chr2:44128557-44128763(-)$1	206	43	46	8.9999
GGh	chr1:236208672-236208926(-)$1	254	20	23	8.9999
H{B	chr14:102506506-102506819(+)$1	313	53	56	8.9999
c[e	chr7:103155531-103155738(-)$1	207	11	14	8.9999
:::	chr6:150114642-150114907(+)$1	265	223	226	8.9999
bbb	chr2:129025863-129026138(-)$1	275	26	29	8.9999
f:E	chr4:2935205-2935458(-)$1	253	88	91	8.9999
c[c	chr1:87368921-87369186(-)$1	265	70	73	8.9999
dd:	chr6:143823496-143823803(-)$1	307	112	115	8.9999
iii	chr2:173340226-173340477(+)$1	251	103	106	8.9999
DDD	chr12:6696446-6696701(-)$1	255	3	6	8.9999
bb"	chr3:186503852-186504070(+)$1	218	135	138	8.9999
A{F	chr4:1902407-1902678(+)$1	271	26	29	8.9999
GG:	chr3:49166063-49166329(-)$1	266	22	25	8.9999
ggg	chr8:25193726-25193991(+)$1	265	65	68	8.9999
EEK	chr13:99040587-99040833(+)$1	246	12	15	8.9999
cc2	chr17:26962192-26962450(-)$1	258	52	55	8.9999
gg[	chr8:38884107-38884335(+)$1	228	29	32	8.9999
:::	chr4:74315698-74315920(+)$1	222	7	10	8.9999
CC:	chr3:195781889-195782146(-)$1	257	55	58	8.9999
ecc	chr2:216230127-216230350(-)$1	223	159	162	8.9999
cc:	chr8:48701661-48701898(-)$1	237	208	211	8.9999
::D	chr16:1872818-1873107(-)$1	289	1	4	8.9999
ggg	chr2:54856021-54856287(+)$1	266	138	141	8.9999
::C	chr2:96964461-96964739(-)$1	278	78	81	8.9999
ee!	chr1:39926243-39926538(+)$1	295	4	7	8.9999
ggg	chr6:30690603-30690837(+)$1	234	94	97	8.9999
!!b	chr15:59189245-59189493(-)$1	248	85	88	8.9999
HHH	chr19:44130919-44131168(-)$1	249	29	32	8.9999
$$$	chr8:48697573-48697785(-)$1	212	153	156	8.9999
FFF	chr18:211079-211345(+)$1	266	15	18	8.9999
DDD	chr2:216274715-216274932(-)$1	217	201	204	8.9999
mmm	chr8:62593432-62593699(-)$1	267	22	25	8.9999
eee	chr3:148902962-148903219(-)$1	257	31	34	8.9999
ggg	chr17:79804804-79805023(-)$1	219	177	180	8.9999
NNN	chr3:122864942-122865192(+)$1	250	18	21	8.9999
CCC	chr5:134124119-134124381(+)$1	262	5	8	8.9999
rrr	chr11:1774938-1775231(-)$1	293	43	46	8.9999
BB{	chr19:12768802-12769056(-)$1	254	48	51	8.9999
nnn	chr17:40630421-40630671(+)$1	250	88	91	8.9999
:::	chr15:65822907-65823157(+)$1	250	0	3	8.9999
ddd	chr7:150773322-150773585(+)$1	263	66	69	8.9999
555	chr1:206903325-206903543(+)$1	218	197	200	8.9999
hhh	chr4:155506977-155507189(-)$1	212	88	91	8.9999
FFF	chr12:9243907-9244114(-)$1	207	2	5	8.9999
bb2	chr13:77730142-77730438(-)$1	296	269	272	8.9999
[bb	chr13:48827847-48828115(+)$1	268	145	148	8.9999
eee	chr19:49119345-49119559(-)$1	214	23	26	8.9999
II{	chr2:21238018-21238232(-)$1	214	15	18	8.9999
bb[	chr19:45412310-45412533(+)$1	223	31	34	8.9999
cFF	chr20:24952047-24952311(-)$1	264	46	49	8.9999
eee	chr6:34389405-34389608(-)$1	203	112	115	8.9999
HHH	chr2:101869533-101869796(+)$1	263	11	14	8.9999
:::	chr10:101556908-101557152(+)$1	244	31	34	8.9999
GGG	chr4:74315689-74315898(+)$1	209	16	19	8.9999
cc!	chr11:129980420-129980657(+)$1	237	48	51	8.9999
ddd	chrX:132670208-132670421(-)$1	213	36	39	8.9999
fff	chr2:44176640-44176898(-)$1	258	72	75	8.9999
BBF	chr2:38545961-38546237(-)$1	276	158	161	8.9999
A{B	chr8:144898565-144898878(-)$1	313	33	36	8.9999
GG{	chr3:127379627-127379885(+)$1	258	36	39	8.9999
ffc	chr11:125475421-125475697(+)$1	276	22	25	8.9999
b]h	chr16:84099991-84100251(-)$1	260	33	36	8.9999
dd"	chr7:103202003-103202254(-)$1	251	32	35	8.9999
eee	chr17:7415437-7415686(+)$1	249	57	60	8.9999
bbm	chr2:219098974-219099219(+)$1	245	17	20	8.9999
cpp	chr19:6694456-6694683(-)$1	227	11	14	8.9999
d]c	chr10:79789061-79789345(-)$1	284	72	75	8.9999
ccc	chr6:160201966-160202236(-)$1	270	90	93	8.9999
coo	chr6:137524616-137524917(-)$1	301	65	68	8.9999
2bb	chr15:64428424-64428698(+)$1	274	214	217	8.9999
ooe	chr4:187540477-187540724(-)$1	247	37	40	8.9999
JJJ	chr11:66114169-66114444(-)$1	275	32	35	8.9999
ccc	chr2:220077043-220077314(-)$1	271	116	119	8.9999
dd#	chr6:32797622-32797881(-)$1	259	9	12	8.9999
JJJ	chr11:66114244-66114476(-)$1	232	64	67	8.9999
:::	chr16:11971283-11971538(-)$1	255	5	8	8.9999
BBD	chr3:186333460-186333673(+)$1	213	12	15	8.9999
ddd	chr19:7621343-7621555(+)$1	212	74	77	8.9999
CC{	chr12:6702255-6702495(-)$1	240	97	100	8.9999
nnn	chr12:64812717-64812975(+)$1	258	144	147	8.9999
CCC	chr5:140963590-140963877(-)$1	287	6	9	8.9999
lld	chr11:118926371-118926656(-)$1	285	109	112	8.9999
%%%	chr3:133473237-133473440(+)$1	203	97	100	8.9999
FF:	chr5:176764605-176764887(-)$1	282	25	28	8.9999
fqq	chrX:153586714-153586979(-)$1	265	82	85	8.9999
fff	chr17:26948371-26948617(-)$1	246	124	127	8.9999
ddd	chr15:44048785-44049038(+)$1	253	16	19	8.9999

#DB
(((	chr16:105731-105940(+)$1	1	41	44	8.9999
)).	chr11:27400204-27400416(-)$1	1	21	24	8.9999
(((	chr6:160455379-160455620(+)$1	1	118	121	8.9999
(..	chr12:104333222-104333468(+)$1	1	117	120	8.9999
((.	chr7:100276216-100276440(+)$1	1	17	20	8.9999
(((	chr8:48751610-48751868(-)$1	1	23	26	8.9999
)).	chr2:44128557-44128763(-)$1	1	43	46	8.9999
(((	chr1:236208672-236208926(-)$1	1	20	23	8.9999
(.(	chr14:102506506-102506819(+)$1	1	53	56	8.9999
(.(	chr7:103155531-103155738(-)$1	1	11	14	8.9999
...	chr6:150114642-150114907(+)$1	1	223	226	8.9999
(((	chr2:129025863-129026138(-)$1	1	26	29	8.9999
).)	chr4:2935205-2935458(-)$1	1	88	91	8.9999
(.(	chr1:87368921-87369186(-)$1	1	70	73	8.9999
)).	chr6:143823496-143823803(-)$1	1	112	115	8.9999
)))	chr2:173340226-173340477(+)$1	1	103	106	8.9999
(((	chr12:6696446-6696701(-)$1	1	3	6	8.9999
((.	chr3:186503852-186504070(+)$1	1	135	138	8.9999
(.(	chr4:1902407-1902678(+)$1	1	26	29	8.9999
((.	chr3:49166063-49166329(-)$1	1	22	25	8.9999
(((	chr8:25193726-25193991(+)$1	1	65	68	8.9999
((.	chr13:99040587-99040833(+)$1	1	12	15	8.9999
)).	chr17:26962192-26962450(-)$1	1	52	55	8.9999
((.	chr8:38884107-38884335(+)$1	1	29	32	8.9999
...	chr4:74315698-74315920(+)$1	1	7	10	8.9999
((.	chr3:195781889-195782146(-)$1	1	55	58	8.9999
)))	chr2:216230127-216230350(-)$1	1	159	162	8.9999
)).	chr8:48701661-48701898(-)$1	1	208	211	8.9999
..(	chr16:1872818-1873107(-)$1	1	1	4	8.9999
)))	chr2:54856021-54856287(+)$1	1	138	141	8.9999
..(	chr2:96964461-96964739(-)$1	1	78	81	8.9999
((.	chr1:39926243-39926538(+)$1	1	4	7	8.9999
(((	chr6:30690603-30690837(+)$1	1	94	97	8.9999
..(	chr15:59189245-59189493(-)$1	1	85	88	8.9999
(((	chr19:44130919-44131168(-)$1	1	29	32	8.9999
...	chr8:48697573-48697785(-)$1	1	153	156	8.9999
(((	chr18:211079-211345(+)$1	1	15	18	8.9999
)))	chr2:216274715-216274932(-)$1	1	201	204	8.9999
...	chr8:62593432-62593699(-)$1	1	22	25	8.9999
)))	chr3:148902962-148903219(-)$1	1	31	34	8.9999
)))	chr17:79804804-79805023(-)$1	1	177	180	8.9999
...	chr3:122864942-122865192(+)$1	1	18	21	8.9999
(((	chr5:134124119-134124381(+)$1	1	5	8	8.9999
...	chr11:1774938-1775231(-)$1	1	43	46	8.9999
((.	chr19:12768802-12769056(-)$1	1	48	51	8.9999
...	chr17:40630421-40630671(+)$1	1	88	91	8.9999
...	chr15:65822907-65823157(+)$1	1	0	3	8.9999
)))	chr7:150773322-150773585(+)$1	1	66	69	8.9999
...	chr1:206903325-206903543(+)$1	1	197	200	8.9999
(((	chr4:155506977-155507189(-)$1	1	88	91	8.9999
(((	chr12:9243907-9244114(-)$1	1	2	5	8.9999
)).	chr13:77730142-77730438(-)$1	1	269	272	8.9999
.((	chr13:48827847-48828115(+)$1	1	145	148	8.9999
)))	chr19:49119345-49119559(-)$1	1	23	26	8.9999
((.	chr2:21238018-21238232(-)$1	1	15	18	8.9999
((.	chr19:45412310-45412533(+)$1	1	31	34	8.9999
)((	chr20:24952047-24952311(-)$1	1	46	49	8.9999
(((	chr6:34389405-34389608(-)$1	1	112	115	8.9999
(((	chr2:101869533-101869796(+)$1	1	11	14	8.9999
...	chr10:101556908-101557152(+)$1	1	31	34	8.9999
(((	chr4:74315689-74315898(+)$1	1	16	19	8.9999
((.	chr11:129980420-129980657(+)$1	1	48	51	8.9999
)))	chrX:132670208-132670421(-)$1	1	36	39	8.9999
(((	chr2:44176640-44176898(-)$1	1	72	75	8.9999
)))	chr2:38545961-38546237(-)$1	1	158	161	8.9999
(.(	chr8:144898565-144898878(-)$1	1	33	36	8.9999
((.	chr3:127379627-127379885(+)$1	1	36	39	8.9999
(((	chr11:125475421-125475697(+)$1	1	22	25	8.9999
).)	chr16:84099991-84100251(-)$1	1	33	36	8.9999
((.	chr7:103202003-103202254(-)$1	1	32	35	8.9999
)))	chr17:7415437-7415686(+)$1	1	57	60	8.9999
((.	chr2:219098974-219099219(+)$1	1	17	20	8.9999
(..	chr19:6694456-6694683(-)$1	1	11	14	8.9999
).)	chr10:79789061-79789345(-)$1	1	72	75	8.9999
(((	chr6:160201966-160202236(-)$1	1	90	93	8.9999
(..	chr6:137524616-137524917(-)$1	1	65	68	8.9999
.))	chr15:64428424-64428698(+)$1	1	214	217	8.9999
..)	chr4:187540477-187540724(-)$1	1	37	40	8.9999
(((	chr11:66114169-66114444(-)$1	1	32	35	8.9999
)))	chr2:220077043-220077314(-)$1	1	116	119	8.9999
((.	chr6:32797622-32797881(-)$1	1	9	12	8.9999
(((	chr11:66114244-66114476(-)$1	1	64	67	8.9999
...	chr16:11971283-11971538(-)$1	1	5	8	8.9999
(((	chr3:186333460-186333673(+)$1	1	12	15	8.9999
)))	chr19:7621343-7621555(+)$1	1	74	77	8.9999
((.	chr12:6702255-6702495(-)$1	1	97	100	8.9999
...	chr12:64812717-64812975(+)$1	1	144	147	8.9999
(((	chr5:140963590-140963877(-)$1	1	6	9	8.9999
..)	chr11:118926371-118926656(-)$1	1	109	112	8.9999
...	chr3:133473237-133473440(+)$1	1	97	100	8.9999
((.	chr5:176764605-176764887(-)$1	1	25	28	8.9999
(..	chrX:153586714-153586979(-)$1	1	82	85	8.9999
)))	chr17:26948371-26948617(-)$1	1	124	127	8.9999
(((	chr15:44048785-44049038(+)$1	1	16	19	8.9999

#PSSM
G : 0.97	g : 0.02	
C : 0.98	c : 0.01	
A : 0.98	a : 0.01	

#score	845.9999999999998
#seq	94
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_CDS_m1_run2.nuc.txt

#NT
CUGU	chr12:123997759-123998014(-)$1	255	208	212	11.9999
CUGU	chr12:76443176-76443421(-)$1	245	195	199	11.9999
CUGU	chr15:44088195-44088536(+)$1	341	170	174	11.9999
CUGU	chr8:95403850-95404112(-)$1	262	150	154	11.9999
CUGU	chr2:27665337-27665625(+)$1	288	237	241	11.9999
CUGU	chr10:133769016-133769312(+)$1	296	148	152	11.9999
CUGU	chr20:31052641-31052903(-)$1	262	3	7	11.9999
CUGU	chr3:148857780-148858055(+)$1	275	220	224	11.9999
CUGU	chr8:42914098-42914360(+)$1	262	24	28	11.9999
CUGU	chr10:133769112-133769394(+)$1	282	52	56	11.9999
CUGU	chr17:16347304-16347560(+)$1	256	15	19	11.9999
CUGU	chr11:93463198-93463471(-)$1	273	257	261	11.9999
CUGU	chr17:26988771-26989098(-)$1	327	0	4	11.9999
CUGU	chr7:32910215-32910532(-)$1	317	217	221	11.9999
CUGU	chr16:2821324-2821616(+)$1	292	60	64	11.9999
CUGU	chr2:153576286-153576552(+)$1	266	259	263	11.9999
CUGU	chr14:71540090-71540388(+)$1	298	178	182	11.9999
CUGU	chr2:58386616-58386852(-)$1	236	164	168	11.9999
CUGU	chr18:33605343-33605664(-)$1	321	144	148	11.9999
CUGU	chr15:64430114-64430385(+)$1	271	34	38	11.9999
CUGU	chr12:9220167-9220403(-)$1	236	19	23	11.9999
CUGU	chr2:58386562-58386816(-)$1	254	128	132	11.9999

#otherMatches

#Struct PSSM
ff]d	chr19:4037221-4037484(+)$1	263	132	136	11.9999
gg]b	chr12:123997759-123998014(-)$1	255	208	212	11.9999
eee:	chr12:76443176-76443421(-)$1	245	195	199	11.9999
>>>>	chr15:44088195-44088536(+)$1	341	170	174	11.9999
dddd	chr8:95403850-95404112(-)$1	262	150	154	11.9999
333e	chr2:27665337-27665625(+)$1	288	237	241	11.9999
eeec	chr10:133769016-133769312(+)$1	296	148	152	11.9999
HHHH	chr20:31052641-31052903(-)$1	262	3	7	11.9999
ccnn	chr3:148857780-148858055(+)$1	275	220	224	11.9999
''''	chr8:42914098-42914360(+)$1	262	24	28	11.9999
GG{C	chr10:133769112-133769394(+)$1	282	52	56	11.9999
ddd:	chr17:16347304-16347560(+)$1	256	15	19	11.9999
/GGG	chr11:93463198-93463471(-)$1	273	257	261	11.9999
::CC	chr17:26988771-26989098(-)$1	327	0	4	11.9999
rrrr	chr7:32910215-32910532(-)$1	317	217	221	11.9999
dddd	chr16:2821324-2821616(+)$1	292	60	64	11.9999
555d	chr2:153576286-153576552(+)$1	266	259	263	11.9999
88bb	chr14:71540090-71540388(+)$1	298	178	182	11.9999
d[cc	chr2:58386616-58386852(-)$1	236	164	168	11.9999
CCCL	chr18:33605343-33605664(-)$1	321	144	148	11.9999
fffd	chr15:64430114-64430385(+)$1	271	34	38	11.9999
cccm	chr12:9220167-9220403(-)$1	236	19	23	11.9999
d[cc	chr2:58386562-58386816(-)$1	254	128	132	11.9999

#DB
)).)	chr19:4037221-4037484(+)$1	1	132	136	11.9999
)).)	chr12:123997759-123998014(-)$1	1	208	212	11.9999
))).	chr12:76443176-76443421(-)$1	1	195	199	11.9999
....	chr15:44088195-44088536(+)$1	1	170	174	11.9999
))))	chr8:95403850-95404112(-)$1	1	150	154	11.9999
...)	chr2:27665337-27665625(+)$1	1	237	241	11.9999
((((	chr10:133769016-133769312(+)$1	1	148	152	11.9999
((((	chr20:31052641-31052903(-)$1	1	3	7	11.9999
((..	chr3:148857780-148858055(+)$1	1	220	224	11.9999
....	chr8:42914098-42914360(+)$1	1	24	28	11.9999
((.(	chr10:133769112-133769394(+)$1	1	52	56	11.9999
))).	chr17:16347304-16347560(+)$1	1	15	19	11.9999
.)))	chr11:93463198-93463471(-)$1	1	257	261	11.9999
..((	chr17:26988771-26989098(-)$1	1	0	4	11.9999
....	chr7:32910215-32910532(-)$1	1	217	221	11.9999
))))	chr16:2821324-2821616(+)$1	1	60	64	11.9999
...)	chr2:153576286-153576552(+)$1	1	259	263	11.9999
..))	chr14:71540090-71540388(+)$1	1	178	182	11.9999
(.((	chr2:58386616-58386852(-)$1	1	164	168	11.9999
(((.	chr18:33605343-33605664(-)$1	1	144	148	11.9999
))))	chr15:64430114-64430385(+)$1	1	34	38	11.9999
(((.	chr12:9220167-9220403(-)$1	1	19	23	11.9999
(.((	chr2:58386562-58386816(-)$1	1	128	132	11.9999

#PSSM
C : 0.99	
U : 0.99	
G : 0.99	
U : 0.99	

#score	275.99999999999994
#seq	23
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_transcript_m3_run2.nuc.txt

#NT
cugagucgggugggugggccgugagucggguggauggacugagucgggugggugggccgugagucggguggauggacugagucguguggguggccgugagucgggugggugggcugugagucggguggguggccgugaguugcguggugggccgugaguugcgugggugggccgugagucgggugggugggccgugagucgggugggGGUGCGGAAUUGGCUGCUAGCGGUGAUGGUGACACAGGGUUACGGAGGAAUCCUCACUCagaugcauuuggacgucuuuguggggaaaugacguggcgccugggauguacuuuacgauucuaauaaagaggag	chr8:144778220-144778572(+)$1	352	11	351	445.0000

#otherMatches

#Struct PSSM
KKBBKKACCCKKHHHHHHHHKKFFFFFF::ffffff!!ccc[bbssssssssssbb22ccc22ffffff:::bb[bb####dddd[bb[ddddmmmmdddd]bb]dddd4444bb]bb:eeeee####eeeee[axxxxxxxxxxxxxxxa]eeeee4444eeeee:FFFFFFYYHHHHHHHH}CCC}AYYBB}EEEEEHHHHHHHH{DDDD:::eeeee"""ccc[dddd[dddd[bbmmmmbbddddddddccc]eeeeeffffff[bbpppppppbb]ffffffccc[a[eeeee####dddd!!ccc[cccooooooccc]ccc22ddddeeeeea	chr5:1468093-1468476(-)$1	383	13	353	445.0000
dddd[cccccc%%%%%%ccc[ccc[ddddrrrrrrrrrdddd]cccccc666666ccc]ccc]dddd88888888cccHHHHHHHH{EEEEEccc[ccc[ccccccooooooccc]ccc]cccccc::bb[eeeee[a[dddd[ffffff[ccc"""ccc[dddd$$$$$ccc[ccc[ccccccooooooccc]ccc]cccccc55555dddd]ccccccffffffdddda]eeeee]bb:ddddffffff!!a"""ggggggg!!eeeeeqqqqqqqqeeeee22ggggggg22a22ffffff]dddd:::::EEEEEHHHHHHHH:::::::::::::	chr8:144778220-144778572(+)$1	352	11	351	445.0000

#DB
..((..((((..((((((((..((((((..((((((..(((.((..........))..)))..))))))...((.((....((((.((.((((....)))).)).))))....)).)).(((((....(((((.(...............).)))))....))))).))))))..)))))))).))).)..)).)))))((((((((.((((...(((((...(((.((((.((((.((....))))))))))))).)))))((((((.((.......)).))))))(((.(.(((((....((((..(((.(((......))).)))..))))))))))	chr5:1468093-1468476(-)$1	1	13	353	445.0000
((((.((((((......(((.(((.((((.........)))).))))))......))).))).))))........)))((((((((.((((((((.(((.((((((......))).))).))))))..((.(((((.(.((((.((((((.(((...(((.((((.....(((.(((.((((((......))).))).)))))).....)))).))))))))))))))))).))))).)).((((((((((..(...(((((((..(((((........)))))..)))))))..)..)))))).)))).....))))))))))))).............	chr8:144778220-144778572(+)$1	1	11	351	445.0000

#PSSM
C : 0.50	c : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	u : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	u : 0.50	
A : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
U : 0.50	c : 0.50	
U : 0.50	c : 0.50	
U : 0.50	g : 0.50	
C : 0.50	u : 0.50	
G : 0.50	g : 0.50	
U : 0.50	a : 0.50	
C : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
U : 0.50	c : 0.50	
U : 0.50	u : 0.50	
C : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	u : 0.50	
A : 0.50	c : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
U : 0.50	g : 0.50	
C : 0.50	u : 0.50	
U : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	u : 0.50	
A : 0.50	c : 0.50	
A : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
C : 0.50	u : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
C : 0.50	a : 0.50	
A : 0.50	c : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	u : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	u : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
C : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	u : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	u : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	c : 0.50	
C : 0.50	g : 0.50	
U : 0.50	u : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	u : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	u : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
U : 0.50	g : 0.50	
C : 0.50	u : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	u : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	u : 0.50	
A : 0.50	u : 0.50	
C : 0.50	u : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
A : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	c : 0.50	
A : 0.50	u : 0.50	
G : 0.50	u : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	u : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	a : 0.50	
G : 0.50	a : 0.50	
G : 0.50	a : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
C : 0.50	u : 0.50	
U : 0.50	g : 0.50	
C : 0.50	u : 0.50	
C : 0.50	a : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	u : 0.50	
A : 0.50	u : 0.50	
A : 0.50	a : 0.50	
G : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
A : 0.50	u : 0.50	
G : 0.50	u : 0.50	
G : 0.50	c : 0.50	
C : 0.50	u : 0.50	
G : 0.50	a : 0.50	
A : 0.50	a : 0.50	
C : 0.50	u : 0.50	
G : 0.50	a : 0.50	
C : 0.50	a : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
U : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	

#score	890.0
#seq	2
#width	340
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_UTR_m1_run2.nuc.txt

#NT
UCUAUUCUUUU	chr2:209169936-209170173(+)$1	237	127	138	14.0869
UGAAUUGUUUU	chr4:104027022-104027300(-)$1	278	147	158	17.2391
UUAAUUUUUUU	chr1:24295722-24296037(-)$1	315	185	196	20.8260
UUAAUAUUUUU	chr2:74334822-74335100(+)$1	278	236	247	16.3695
UUACUCAUUUU	chr3:37216107-37216396(-)$1	289	115	126	15.0652
UUAAUUUUUCU	chr6:4064828-4065059(+)$1	231	178	189	16.4782
UUAAUUCAUUU	chr1:21100272-21100504(-)$1	232	210	221	16.6956
UUAAAUAUAUU	chr21:45524067-45524328(+)$1	261	88	99	16.4782
UUAAUUGUUUU	chr18:33605570-33605857(-)$1	287	110	121	20.7173
AUAACUAUUUU	chr11:9316579-9316810(-)$1	231	80	91	16.8043
UUAAUUCUUUA	chr19:30503347-30503637(+)$1	290	108	119	17.1304
UAAAAUAUUUU	chr6:126360006-126360257(+)$1	251	74	85	16.9130
CCAAUUAUUUU	chr8:124826932-124827178(+)$1	246	220	231	16.3695
cuaauuauauu	chr19:21560774-21561064(+)$1	290	180	191	15.9347
uuaaguauuuu	chr7:63985561-63985809(-)$1	248	59	70	20.0652
UGUAUUAUUUU	chr17:25635495-25635712(+)$1	217	9	20	16.6956
UUAAUUUUUAU	chr1:90493477-90493697(+)$1	220	27	38	16.4782
UUGAAUAUUUU	chr2:172848294-172848519(+)$1	225	95	106	16.8043
UUAAUUAUUUU	chr15:42805348-42805609(+)$1	261	68	79	23.5434
UUAAAUAUUUG	chr12:98929250-98929518(+)$1	268	220	231	16.5869
UUUAUUGUUUU	chr4:146080190-146080495(-)$1	305	213	224	17.3478
UUAAUUCAUUU	chr13:98045357-98045610(+)$1	253	184	195	16.6956
UUAUUUAUUCU	chr8:105501426-105501799(-)$1	373	104	115	15.2826
UCAAUUAUUUG	chr15:59955009-59955297(-)$1	288	18	29	16.0434
AUAAUCAUUUU	chr18:70828860-70829120(-)$1	260	203	214	15.8260
cuaauuauauu	chr19:21560947-21561223(+)$1	276	7	18	15.9347
UGAAGUAUUUU	chr21:34106923-34107235(-)$1	312	201	212	16.5869
UUUUUUCUUUU	chr1:114935347-114935598(-)$1	251	27	38	13.7608
UUAGCUAUUUU	chr4:57897077-57897302(+)$1	225	73	84	16.0434
uuauuuauuua	chr12:88529666-88529959(-)$1	293	251	262	15.7173
UUAAUUAUUUA	chr1:85622979-85623259(-)$1	280	86	97	19.6304
UAAAUUUUUUU	chr3:169888883-169889190(-)$1	307	40	51	17.2391
UUAAUUCUGUU	chr9:86584375-86584601(-)$1	226	34	45	16.8043
ggaauuauuuu	chr15:60743529-60743779(-)$1	250	61	72	16.4782
AUGAUUAUUUU	chr1:229476095-229476346(-)$1	251	214	225	16.3695
AUGAUUAUUUU	chr8:74202700-74202958(-)$1	258	27	38	16.3695
UUAAUUAACUU	chr5:102538621-102538913(+)$1	292	24	35	15.0652
GUAAUUAUUUC	chr1:246489063-246489324(-)$1	261	249	260	15.8260
UUAAAUAUCUU	chr3:101489138-101489495(+)$1	357	43	54	16.3695
UUAACUCUUUU	chr6:139250874-139251171(-)$1	297	91	102	17.7826
UUAACUAUUUG	chr6:4061699-4061955(+)$1	256	84	95	16.3695
UUAAAUAUUUU	chr17:62914700-62914993(-)$1	293	174	185	20.4999
GUAUUUAUUUU	chr10:64927421-64927685(-)$1	264	159	170	16.0434
UAAAUCAUUUU	chr5:133510132-133510375(-)$1	243	127	138	15.7173
UUUAUUAUUAU	chr4:17836031-17836308(+)$1	277	169	180	15.8260

#otherMatches

#Struct PSSM
::::::::::e	chr11:18369416-18369743(+)$1	327	260	271	17.3478
D::::::::::	chr2:209169936-209170173(+)$1	237	127	138	14.0869
::::::::GGG	chr4:104027022-104027300(-)$1	278	147	158	17.2391
ZZCCCZZZFFF	chr1:24295722-24296037(-)$1	315	185	196	20.8260
:::::::::::	chr2:74334822-74335100(+)$1	278	236	247	16.3695
#ccc[ffffff	chr3:37216107-37216396(-)$1	289	115	126	15.0652
:::::::::::	chr6:4064828-4065059(+)$1	231	178	189	16.4782
:::::::::::	chr1:21100272-21100504(-)$1	232	210	221	16.6956
dddd+++++++	chr21:45524067-45524328(+)$1	261	88	99	16.4782
ddeeeee5555	chr18:33605570-33605857(-)$1	287	110	121	20.7173
:::::::ffff	chr11:9316579-9316810(-)$1	231	80	91	16.8043
ffffff[ffff	chr19:30503347-30503637(+)$1	290	108	119	17.1304
+++++++++++	chr6:126360006-126360257(+)$1	251	74	85	16.9130
::hhhhhhhhl	chr8:124826932-124827178(+)$1	246	220	231	16.3695
b[ffffff%%%	chr19:21560774-21561064(+)$1	290	180	191	15.9347
!!fffffflll	chr7:63985561-63985809(-)$1	248	59	70	20.0652
FFFNNNNNFFF	chr17:25635495-25635712(+)$1	217	9	20	16.6956
ddccc[eeeee	chr1:90493477-90493697(+)$1	220	27	38	16.4782
!!cccmmmmcc	chr2:172848294-172848519(+)$1	225	95	106	16.8043
:::::::::::	chr15:42805348-42805609(+)$1	261	68	79	23.5434
fnnnnnfffff	chr12:98929250-98929518(+)$1	268	220	231	16.5869
=========='	chr4:146080190-146080495(-)$1	305	213	224	17.3478
ddddnnnnndd	chr13:98045357-98045610(+)$1	253	184	195	16.6956
fuuuuuuuuuu	chr8:105501426-105501799(-)$1	373	104	115	15.2826
ddddmmmmddd	chr15:59955009-59955297(-)$1	288	18	29	16.0434
dd22dddd444	chr18:70828860-70829120(-)$1	260	203	214	15.8260
[ccc[eeeeeq	chr19:21560947-21561223(+)$1	276	7	18	15.9347
ccc[ddddlll	chr21:34106923-34107235(-)$1	312	201	212	16.5869
:::::::::GG	chr1:114935347-114935598(-)$1	251	27	38	13.7608
::ffffff"""	chr4:57897077-57897302(+)$1	225	73	84	16.0434
:::::::::::	chr12:88529666-88529959(-)$1	293	251	262	15.7173
:::::::::::	chr1:85622979-85623259(-)$1	280	86	97	19.6304
:::::::::::	chr3:169888883-169889190(-)$1	307	40	51	17.2391
:::::::EEEE	chr9:86584375-86584601(-)$1	226	34	45	16.8043
HHHHHHHMMMM	chr15:60743529-60743779(-)$1	250	61	72	16.4782
:::::::::::	chr1:229476095-229476346(-)$1	251	214	225	16.3695
CCCCC::::::	chr8:74202700-74202958(-)$1	258	27	38	16.3695
=======bb!!	chr5:102538621-102538913(+)$1	292	24	35	15.0652
fffff::::::	chr1:246489063-246489324(-)$1	261	249	260	15.8260
hhhhhhbb[gg	chr3:101489138-101489495(+)$1	357	43	54	16.3695
ooooooggggg	chr6:139250874-139251171(-)$1	297	91	102	17.7826
ggg[dddd!!c	chr6:4061699-4061955(+)$1	256	84	95	16.3695
lleeeee22bb	chr17:62914700-62914993(-)$1	293	174	185	20.4999
qqqdddd22gg	chr10:64927421-64927685(-)$1	264	159	170	16.0434
8888hhhhhhh	chr5:133510132-133510375(-)$1	243	127	138	15.7173
JJJJJJJJJJJ	chr4:17836031-17836308(+)$1	277	169	180	15.8260

#DB
..........(	chr11:18369416-18369743(+)$1	1	260	271	17.3478
)..........	chr2:209169936-209170173(+)$1	1	127	138	14.0869
........)))	chr4:104027022-104027300(-)$1	1	147	158	17.2391
..)))...)))	chr1:24295722-24296037(-)$1	1	185	196	20.8260
...........	chr2:74334822-74335100(+)$1	1	236	247	16.3695
.(((.((((((	chr3:37216107-37216396(-)$1	1	115	126	15.0652
...........	chr6:4064828-4065059(+)$1	1	178	189	16.4782
...........	chr1:21100272-21100504(-)$1	1	210	221	16.6956
((((.......	chr21:45524067-45524328(+)$1	1	88	99	16.4782
)))))))....	chr18:33605570-33605857(-)$1	1	110	121	20.7173
.......((((	chr11:9316579-9316810(-)$1	1	80	91	16.8043
((((((.((((	chr19:30503347-30503637(+)$1	1	108	119	17.1304
...........	chr6:126360006-126360257(+)$1	1	74	85	16.9130
..((((((((.	chr8:124826932-124827178(+)$1	1	220	231	16.3695
(.((((((...	chr19:21560774-21561064(+)$1	1	180	191	15.9347
..((((((...	chr7:63985561-63985809(-)$1	1	59	70	20.0652
(((.....(((	chr17:25635495-25635712(+)$1	1	9	20	16.6956
(((((.(((((	chr1:90493477-90493697(+)$1	1	27	38	16.4782
..(((....))	chr2:172848294-172848519(+)$1	1	95	106	16.8043
...........	chr15:42805348-42805609(+)$1	1	68	79	23.5434
(.....)))))	chr12:98929250-98929518(+)$1	1	220	231	16.5869
((((((((((.	chr4:146080190-146080495(-)$1	1	213	224	17.3478
((((.....))	chr13:98045357-98045610(+)$1	1	184	195	16.6956
(..........	chr8:105501426-105501799(-)$1	1	104	115	15.2826
((((....)))	chr15:59955009-59955297(-)$1	1	18	29	16.0434
))..))))...	chr18:70828860-70829120(-)$1	1	203	214	15.8260
.(((.(((((.	chr19:21560947-21561223(+)$1	1	7	18	15.9347
(((.((((...	chr21:34106923-34107235(-)$1	1	201	212	16.5869
.........((	chr1:114935347-114935598(-)$1	1	27	38	13.7608
..((((((...	chr4:57897077-57897302(+)$1	1	73	84	16.0434
...........	chr12:88529666-88529959(-)$1	1	251	262	15.7173
...........	chr1:85622979-85623259(-)$1	1	86	97	19.6304
...........	chr3:169888883-169889190(-)$1	1	40	51	17.2391
.......((((	chr9:86584375-86584601(-)$1	1	34	45	16.8043
(((((((....	chr15:60743529-60743779(-)$1	1	61	72	16.4782
...........	chr1:229476095-229476346(-)$1	1	214	225	16.3695
(((((......	chr8:74202700-74202958(-)$1	1	27	38	16.3695
(((((((((..	chr5:102538621-102538913(+)$1	1	24	35	15.0652
)))))......	chr1:246489063-246489324(-)$1	1	249	260	15.8260
((((((((.((	chr3:101489138-101489495(+)$1	1	43	54	16.3695
......)))))	chr6:139250874-139251171(-)$1	1	91	102	17.7826
(((.((((..(	chr6:4061699-4061955(+)$1	1	84	95	16.3695
..)))))..))	chr17:62914700-62914993(-)$1	1	174	185	20.4999
...))))..))	chr10:64927421-64927685(-)$1	1	159	170	16.0434
....)))))))	chr5:133510132-133510375(-)$1	1	127	138	15.7173
)))))))))))	chr4:17836031-17836308(+)$1	1	169	180	15.8260

#PSSM
U : 0.73	A : 0.08	c : 0.04	u : 0.04	G : 0.04	C : 0.02	g : 0.02	
U : 0.69	u : 0.08	C : 0.06	G : 0.06	A : 0.06	g : 0.02	
A : 0.69	U : 0.13	a : 0.10	G : 0.06	
A : 0.78	a : 0.08	U : 0.06	C : 0.02	G : 0.02	u : 0.02	
U : 0.63	A : 0.13	u : 0.10	C : 0.08	g : 0.02	G : 0.02	
U : 0.78	u : 0.13	C : 0.06	A : 0.02	
A : 0.54	C : 0.15	U : 0.10	a : 0.10	G : 0.06	g : 0.02	
U : 0.80	u : 0.13	A : 0.06	
U : 0.78	u : 0.08	a : 0.04	C : 0.04	A : 0.02	G : 0.02	
U : 0.78	u : 0.13	C : 0.04	A : 0.04	
U : 0.73	u : 0.10	G : 0.06	A : 0.04	a : 0.02	C : 0.02	

#score	776.2608695652169
#seq	46
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_transcript_m3_run2.nuc.txt

#NT
UGC	chr1:226108819-226109047(-)$1	228	15	18	9.0000
UGC	chr11:125476134-125476448(+)$1	314	119	122	9.0000
UGC	chrX:44928859-44929160(+)$1	301	94	97	9.0000
UGC	chr1:31447396-31447641(-)$1	245	47	50	9.0000
UGC	chr10:121658210-121658558(+)$1	348	31	34	9.0000
UGC	chr21:45193896-45194213(-)$1	317	3	6	9.0000
UGC	chr11:85669986-85670203(-)$1	217	153	156	9.0000
ugc	chr16:30735912-30736154(+)$1	242	160	163	9.0000
ugc	chr7:150646456-150646715(-)$1	259	125	128	9.0000
UGC	chr3:183960309-183960564(-)$1	255	43	46	9.0000
UGC	chr16:69776262-69776578(-)$1	316	150	153	9.0000
UGC	chr11:66044399-66044702(+)$1	303	7	10	9.0000
UGC	chr1:10132008-10132324(+)$1	316	35	38	9.0000
ugc	chr3:183890134-183890377(+)$1	243	112	115	9.0000
ugc	chr8:129113152-129113417(+)$1	265	3	6	9.0000
UGC	chr1:228286061-228286288(+)$1	227	54	57	9.0000
UGC	chr5:179157454-179157708(+)$1	254	13	16	9.0000
UGC	chr20:35864981-35865212(+)$1	231	4	7	9.0000
UGC	chr7:4780477-4780754(+)$1	277	74	77	9.0000
UGC	chr5:130500877-130501097(-)$1	220	58	61	9.0000
UGC	chr6:31598343-31598568(+)$1	225	85	88	9.0000
UGC	chr20:44047857-44048103(+)$1	246	95	98	9.0000
UGC	chr21:44328945-44329277(+)$1	332	40	43	9.0000
UGC	chr9:131085645-131085926(+)$1	281	26	29	9.0000
UGC	chr16:56396416-56396679(-)$1	263	69	72	9.0000
UGC	chr6:7301455-7301714(-)$1	259	65	68	9.0000
UGC	chr3:12625397-12625615(-)$1	218	13	16	9.0000
UGC	chr17:57721544-57721806(+)$1	262	164	167	9.0000
UGC	chr19:32975395-32975683(+)$1	288	42	45	9.0000
UGC	chr14:23595182-23595448(-)$1	266	125	128	9.0000
UGC	chr1:138912-139202(-)$1	290	53	56	9.0000
UGC	chr12:56537832-56538085(+)$1	253	55	58	9.0000
UGC	chr5:137842721-137842966(-)$1	245	181	184	9.0000
UGC	chr17:38435105-38435369(+)$1	264	80	83	9.0000
UGC	chr6:30655815-30656133(-)$1	318	0	3	9.0000
UGC	chr12:49522191-49522414(-)$1	223	34	37	9.0000
UGC	chr12:4411244-4411489(+)$1	245	2	5	9.0000
UGC	chr7:73610228-73610444(+)$1	216	139	142	9.0000
UGC	chr19:38873826-38874053(+)$1	227	61	64	9.0000
UGC	chr19:47112357-47112570(+)$1	213	9	12	9.0000
UGC	chrX:40523460-40523801(-)$1	341	165	168	9.0000
UGC	chr5:130500861-130501077(-)$1	216	38	41	9.0000
UGC	chr17:48458563-48458810(-)$1	247	4	7	9.0000
UGC	chr22:37964035-37964332(+)$1	297	61	64	9.0000
UGC	chr20:37146343-37146661(+)$1	318	5	8	9.0000
UGC	chr6:30672047-30672319(-)$1	272	154	157	9.0000
ugc	chr16:4740582-4740875(+)$1	293	1	4	9.0000
UGC	chr17:48458639-48458852(-)$1	213	46	49	9.0000
UGC	chr9:79008908-79009176(-)$1	268	83	86	9.0000
UGC	chr12:7045263-7045515(+)$1	252	27	30	9.0000
UGC	chr9:114994369-114994617(-)$1	248	78	81	9.0000
UGC	chr13:25905563-25905812(+)$1	249	70	73	9.0000
UGC	chr2:86719365-86719800(+)$1	435	71	74	9.0000
UGC	chr19:36640977-36641199(+)$1	222	15	18	9.0000
UGC	chr12:51637085-51637343(+)$1	258	20	23	9.0000
UGC	chr14:100800050-100800289(-)$1	239	42	45	9.0000
UGC	chr10:96997385-96997633(-)$1	248	41	44	9.0000
UGC	chr11:17099065-17099267(-)$1	202	11	14	9.0000
UGC	chr8:124220771-124221026(+)$1	255	5	8	9.0000
ugc	chr5:133996708-133996939(+)$1	231	10	13	9.0000
UGC	chr4:73957057-73957319(-)$1	262	40	43	9.0000
UGC	chr1:26799067-26799313(+)$1	246	17	20	9.0000
UGC	chr22:22127089-22127329(-)$1	240	24	27	9.0000
UGC	chr16:28846568-28846793(+)$1	225	22	25	9.0000
UGC	chr12:24970290-24970548(-)$1	258	24	27	9.0000
UGC	chr20:33866651-33866914(-)$1	263	64	67	9.0000
UGC	chr22:22116632-22116879(-)$1	247	24	27	9.0000
UGC	chr9:137293592-137293830(+)$1	238	92	95	9.0000
UGC	chr9:134133748-134133975(-)$1	227	5	8	9.0000
UGC	chrX:152958884-152959139(+)$1	255	77	80	9.0000
UGC	chr1:152005077-152005299(-)$1	222	114	117	9.0000
UGC	chr9:115024708-115024938(-)$1	230	15	18	9.0000
UGC	chr13:76111799-76112079(-)$1	280	11	14	9.0000
ugc	chr6:37787548-37787883(+)$1	335	140	143	9.0000
UGC	chr9:33953185-33953542(-)$1	357	31	34	9.0000
UGC	chr1:154241191-154241461(+)$1	270	79	82	9.0000
UGC	chr11:85694910-85695116(-)$1	206	9	12	9.0000
UGC	chr17:76202996-76203293(+)$1	297	51	54	9.0000
ugc	chr6:34212722-34212935(+)$1	213	80	83	9.0000
UGC	chr8:101721613-101721868(-)$1	255	84	87	9.0000
UGC	chr1:150938437-150938691(-)$1	254	82	85	9.0000
UGC	chr2:113404440-113404692(+)$1	252	35	38	9.0000
UGC	chr19:54684628-54684937(-)$1	309	26	29	9.0000
UGC	chr20:49201074-49201311(+)$1	237	78	81	9.0000
UGC	chr7:150070541-150070788(+)$1	247	41	44	9.0000
UGC	chr16:30975910-30976179(+)$1	269	8	11	9.0000
UGC	chr7:77256434-77256701(+)$1	267	53	56	9.0000
UGC	chr9:14921670-14921903(-)$1	233	57	60	9.0000
UGC	chrX:77160579-77160827(+)$1	248	230	233	9.0000
UGC	chr19:6211304-6211567(-)$1	263	70	73	9.0000
UGC	chr1:52486338-52486618(-)$1	280	22	25	9.0000
UGC	chr6:44198447-44198671(+)$1	224	60	63	9.0000
UGC	chr19:797999-798218(+)$1	219	81	84	9.0000
UGC	chr7:143079847-143080105(+)$1	258	14	17	9.0000
UGC	chr7:2770021-2770297(-)$1	276	6	9	9.0000
ugc	chr12:56667443-56667678(-)$1	235	5	8	9.0000
UGC	chr1:41228505-41228792(+)$1	287	70	73	9.0000

#otherMatches

#Struct PSSM
:::	chr1:27732733-27732994(-)$1	261	5	8	9.0000
::H	chr1:226108819-226109047(-)$1	228	15	18	9.0000
ccq	chr11:125476134-125476448(+)$1	314	119	122	9.0000
ee#	chrX:44928859-44929160(+)$1	301	94	97	9.0000
ddd	chr1:31447396-31447641(-)$1	245	47	50	9.0000
cco	chr10:121658210-121658558(+)$1	348	31	34	9.0000
JJJ	chr21:45193896-45194213(-)$1	317	3	6	9.0000
ddd	chr11:85669986-85670203(-)$1	217	153	156	9.0000
eee	chr16:30735912-30736154(+)$1	242	160	163	9.0000
obb	chr7:150646456-150646715(-)$1	259	125	128	9.0000
JJJ	chr3:183960309-183960564(-)$1	255	43	46	9.0000
:BB	chr16:69776262-69776578(-)$1	316	150	153	9.0000
:BB	chr11:66044399-66044702(+)$1	303	7	10	9.0000
ggg	chr1:10132008-10132324(+)$1	316	35	38	9.0000
]bb	chr3:183890134-183890377(+)$1	243	112	115	9.0000
:::	chr8:129113152-129113417(+)$1	265	3	6	9.0000
EEE	chr1:228286061-228286288(+)$1	227	54	57	9.0000
:==	chr5:179157454-179157708(+)$1	254	13	16	9.0000
ccd	chr20:35864981-35865212(+)$1	231	4	7	9.0000
dd]	chr7:4780477-4780754(+)$1	277	74	77	9.0000
fff	chr5:130500877-130501097(-)$1	220	58	61	9.0000
cbb	chr6:31598343-31598568(+)$1	225	85	88	9.0000
===	chr20:44047857-44048103(+)$1	246	95	98	9.0000
]bb	chr21:44328945-44329277(+)$1	332	40	43	9.0000
ldd	chr9:131085645-131085926(+)$1	281	26	29	9.0000
eee	chr16:56396416-56396679(-)$1	263	69	72	9.0000
ddd	chr6:7301455-7301714(-)$1	259	65	68	9.0000
LLC	chr3:12625397-12625615(-)$1	218	13	16	9.0000
DDY	chr17:57721544-57721806(+)$1	262	164	167	9.0000
::g	chr19:32975395-32975683(+)$1	288	42	45	9.0000
::E	chr14:23595182-23595448(-)$1	266	125	128	9.0000
"hh	chr1:138912-139202(-)$1	290	53	56	9.0000
eee	chr12:56537832-56538085(+)$1	253	55	58	9.0000
mee	chr5:137842721-137842966(-)$1	245	181	184	9.0000
ee[	chr17:38435105-38435369(+)$1	264	80	83	9.0000
DDD	chr6:30655815-30656133(-)$1	318	0	3	9.0000
""c	chr12:49522191-49522414(-)$1	223	34	37	9.0000
GGG	chr12:4411244-4411489(+)$1	245	2	5	9.0000
!a[	chr7:73610228-73610444(+)$1	216	139	142	9.0000
cc[	chr19:38873826-38874053(+)$1	227	61	64	9.0000
::g	chr19:47112357-47112570(+)$1	213	9	12	9.0000
:cc	chrX:40523460-40523801(-)$1	341	165	168	9.0000
fff	chr5:130500861-130501077(-)$1	216	38	41	9.0000
:CC	chr17:48458563-48458810(-)$1	247	4	7	9.0000
WWW	chr22:37964035-37964332(+)$1	297	61	64	9.0000
CRR	chr20:37146343-37146661(+)$1	318	5	8	9.0000
ddd	chr6:30672047-30672319(-)$1	272	154	157	9.0000
bb[	chr16:4740582-4740875(+)$1	293	1	4	9.0000
cc"	chr17:48458639-48458852(-)$1	213	46	49	9.0000
!a$	chr9:79008908-79009176(-)$1	268	83	86	9.0000
www	chr12:7045263-7045515(+)$1	252	27	30	9.0000
hhh	chr9:114994369-114994617(-)$1	248	78	81	9.0000
ccc	chr13:25905563-25905812(+)$1	249	70	73	9.0000
JJ{	chr2:86719365-86719800(+)$1	435	71	74	9.0000
"ee	chr19:36640977-36641199(+)$1	222	15	18	9.0000
iii	chr12:51637085-51637343(+)$1	258	20	23	9.0000
fff	chr14:100800050-100800289(-)$1	239	42	45	9.0000
ndd	chr10:96997385-96997633(-)$1	248	41	44	9.0000
c::	chr11:17099065-17099267(-)$1	202	11	14	9.0000
FFK	chr8:124220771-124221026(+)$1	255	5	8	9.0000
:::	chr5:133996708-133996939(+)$1	231	10	13	9.0000
DDD	chr4:73957057-73957319(-)$1	262	40	43	9.0000
:cc	chr1:26799067-26799313(+)$1	246	17	20	9.0000
:EE	chr22:22127089-22127329(-)$1	240	24	27	9.0000
MMC	chr16:28846568-28846793(+)$1	225	22	25	9.0000
DDE	chr12:24970290-24970548(-)$1	258	24	27	9.0000
]dd	chr20:33866651-33866914(-)$1	263	64	67	9.0000
FF:	chr22:22116632-22116879(-)$1	247	24	27	9.0000
c[f	chr9:137293592-137293830(+)$1	238	92	95	9.0000
DDD	chr9:134133748-134133975(-)$1	227	5	8	9.0000
DDD	chrX:152958884-152959139(+)$1	255	77	80	9.0000
]ee	chr1:152005077-152005299(-)$1	222	114	117	9.0000
ELL	chr9:115024708-115024938(-)$1	230	15	18	9.0000
[cc	chr13:76111799-76112079(-)$1	280	11	14	9.0000
ccc	chr6:37787548-37787883(+)$1	335	140	143	9.0000
CDD	chr9:33953185-33953542(-)$1	357	31	34	9.0000
III	chr1:154241191-154241461(+)$1	270	79	82	9.0000
ggg	chr11:85694910-85695116(-)$1	206	9	12	9.0000
{EE	chr17:76202996-76203293(+)$1	297	51	54	9.0000
eee	chr6:34212722-34212935(+)$1	213	80	83	9.0000
eee	chr8:101721613-101721868(-)$1	255	84	87	9.0000
ccn	chr1:150938437-150938691(-)$1	254	82	85	9.0000
GGG	chr2:113404440-113404692(+)$1	252	35	38	9.0000
:ee	chr19:54684628-54684937(-)$1	309	26	29	9.0000
cce	chr20:49201074-49201311(+)$1	237	78	81	9.0000
eee	chr7:150070541-150070788(+)$1	247	41	44	9.0000
ddd	chr16:30975910-30976179(+)$1	269	8	11	9.0000
bb[	chr7:77256434-77256701(+)$1	267	53	56	9.0000
DKK	chr9:14921670-14921903(-)$1	233	57	60	9.0000
ccc	chrX:77160579-77160827(+)$1	248	230	233	9.0000
eee	chr19:6211304-6211567(-)$1	263	70	73	9.0000
ccc	chr1:52486338-52486618(-)$1	280	22	25	9.0000
ppp	chr6:44198447-44198671(+)$1	224	60	63	9.0000
55a	chr19:797999-798218(+)$1	219	81	84	9.0000
KBB	chr7:143079847-143080105(+)$1	258	14	17	9.0000
HHH	chr7:2770021-2770297(-)$1	276	6	9	9.0000
MCC	chr12:56667443-56667678(-)$1	235	5	8	9.0000
off	chr1:41228505-41228792(+)$1	287	70	73	9.0000

#DB
...	chr1:27732733-27732994(-)$1	1	5	8	9.0000
..(	chr1:226108819-226109047(-)$1	1	15	18	9.0000
((.	chr11:125476134-125476448(+)$1	1	119	122	9.0000
((.	chrX:44928859-44929160(+)$1	1	94	97	9.0000
(((	chr1:31447396-31447641(-)$1	1	47	50	9.0000
((.	chr10:121658210-121658558(+)$1	1	31	34	9.0000
(((	chr21:45193896-45194213(-)$1	1	3	6	9.0000
(((	chr11:85669986-85670203(-)$1	1	153	156	9.0000
(((	chr16:30735912-30736154(+)$1	1	160	163	9.0000
.))	chr7:150646456-150646715(-)$1	1	125	128	9.0000
(((	chr3:183960309-183960564(-)$1	1	43	46	9.0000
.))	chr16:69776262-69776578(-)$1	1	150	153	9.0000
.((	chr11:66044399-66044702(+)$1	1	7	10	9.0000
)))	chr1:10132008-10132324(+)$1	1	35	38	9.0000
.))	chr3:183890134-183890377(+)$1	1	112	115	9.0000
...	chr8:129113152-129113417(+)$1	1	3	6	9.0000
(((	chr1:228286061-228286288(+)$1	1	54	57	9.0000
.((	chr5:179157454-179157708(+)$1	1	13	16	9.0000
(((	chr20:35864981-35865212(+)$1	1	4	7	9.0000
)).	chr7:4780477-4780754(+)$1	1	74	77	9.0000
)))	chr5:130500877-130501097(-)$1	1	58	61	9.0000
(((	chr6:31598343-31598568(+)$1	1	85	88	9.0000
(((	chr20:44047857-44048103(+)$1	1	95	98	9.0000
.))	chr21:44328945-44329277(+)$1	1	40	43	9.0000
.))	chr9:131085645-131085926(+)$1	1	26	29	9.0000
(((	chr16:56396416-56396679(-)$1	1	69	72	9.0000
(((	chr6:7301455-7301714(-)$1	1	65	68	9.0000
..(	chr3:12625397-12625615(-)$1	1	13	16	9.0000
)).	chr17:57721544-57721806(+)$1	1	164	167	9.0000
..(	chr19:32975395-32975683(+)$1	1	42	45	9.0000
..)	chr14:23595182-23595448(-)$1	1	125	128	9.0000
.((	chr1:138912-139202(-)$1	1	53	56	9.0000
(((	chr12:56537832-56538085(+)$1	1	55	58	9.0000
.))	chr5:137842721-137842966(-)$1	1	181	184	9.0000
((.	chr17:38435105-38435369(+)$1	1	80	83	9.0000
(((	chr6:30655815-30656133(-)$1	1	0	3	9.0000
..(	chr12:49522191-49522414(-)$1	1	34	37	9.0000
(((	chr12:4411244-4411489(+)$1	1	2	5	9.0000
.(.	chr7:73610228-73610444(+)$1	1	139	142	9.0000
((.	chr19:38873826-38874053(+)$1	1	61	64	9.0000
..(	chr19:47112357-47112570(+)$1	1	9	12	9.0000
.((	chrX:40523460-40523801(-)$1	1	165	168	9.0000
)))	chr5:130500861-130501077(-)$1	1	38	41	9.0000
.((	chr17:48458563-48458810(-)$1	1	4	7	9.0000
...	chr22:37964035-37964332(+)$1	1	61	64	9.0000
(..	chr20:37146343-37146661(+)$1	1	5	8	9.0000
)))	chr6:30672047-30672319(-)$1	1	154	157	9.0000
((.	chr16:4740582-4740875(+)$1	1	1	4	9.0000
((.	chr17:48458639-48458852(-)$1	1	46	49	9.0000
.(.	chr9:79008908-79009176(-)$1	1	83	86	9.0000
...	chr12:7045263-7045515(+)$1	1	27	30	9.0000
(((	chr9:114994369-114994617(-)$1	1	78	81	9.0000
(((	chr13:25905563-25905812(+)$1	1	70	73	9.0000
((.	chr2:86719365-86719800(+)$1	1	71	74	9.0000
.((	chr19:36640977-36641199(+)$1	1	15	18	9.0000
(((	chr12:51637085-51637343(+)$1	1	20	23	9.0000
(((	chr14:100800050-100800289(-)$1	1	42	45	9.0000
.))	chr10:96997385-96997633(-)$1	1	41	44	9.0000
)..	chr11:17099065-17099267(-)$1	1	11	14	9.0000
((.	chr8:124220771-124221026(+)$1	1	5	8	9.0000
...	chr5:133996708-133996939(+)$1	1	10	13	9.0000
(((	chr4:73957057-73957319(-)$1	1	40	43	9.0000
.((	chr1:26799067-26799313(+)$1	1	17	20	9.0000
.((	chr22:22127089-22127329(-)$1	1	24	27	9.0000
..(	chr16:28846568-28846793(+)$1	1	22	25	9.0000
(((	chr12:24970290-24970548(-)$1	1	24	27	9.0000
.))	chr20:33866651-33866914(-)$1	1	64	67	9.0000
((.	chr22:22116632-22116879(-)$1	1	24	27	9.0000
(.(	chr9:137293592-137293830(+)$1	1	92	95	9.0000
(((	chr9:134133748-134133975(-)$1	1	5	8	9.0000
(((	chrX:152958884-152959139(+)$1	1	77	80	9.0000
.))	chr1:152005077-152005299(-)$1	1	114	117	9.0000
(..	chr9:115024708-115024938(-)$1	1	15	18	9.0000
.((	chr13:76111799-76112079(-)$1	1	11	14	9.0000
(((	chr6:37787548-37787883(+)$1	1	140	143	9.0000
(((	chr9:33953185-33953542(-)$1	1	31	34	9.0000
(((	chr1:154241191-154241461(+)$1	1	79	82	9.0000
(((	chr11:85694910-85695116(-)$1	1	9	12	9.0000
.((	chr17:76202996-76203293(+)$1	1	51	54	9.0000
(((	chr6:34212722-34212935(+)$1	1	80	83	9.0000
(((	chr8:101721613-101721868(-)$1	1	84	87	9.0000
((.	chr1:150938437-150938691(-)$1	1	82	85	9.0000
(((	chr2:113404440-113404692(+)$1	1	35	38	9.0000
.((	chr19:54684628-54684937(-)$1	1	26	29	9.0000
(((	chr20:49201074-49201311(+)$1	1	78	81	9.0000
(((	chr7:150070541-150070788(+)$1	1	41	44	9.0000
(((	chr16:30975910-30976179(+)$1	1	8	11	9.0000
((.	chr7:77256434-77256701(+)$1	1	53	56	9.0000
(..	chr9:14921670-14921903(-)$1	1	57	60	9.0000
(((	chrX:77160579-77160827(+)$1	1	230	233	9.0000
(((	chr19:6211304-6211567(-)$1	1	70	73	9.0000
(((	chr1:52486338-52486618(-)$1	1	22	25	9.0000
...	chr6:44198447-44198671(+)$1	1	60	63	9.0000
..)	chr19:797999-798218(+)$1	1	81	84	9.0000
.((	chr7:143079847-143080105(+)$1	1	14	17	9.0000
(((	chr7:2770021-2770297(-)$1	1	6	9	9.0000
.((	chr12:56667443-56667678(-)$1	1	5	8	9.0000
.))	chr1:41228505-41228792(+)$1	1	70	73	9.0000

#PSSM
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	
C : 0.90	c : 0.09	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_UTR_m2_run1.nuc.txt

#NT
CUG	chr5:139059858-139060154(+)$1	296	57	60	8.9999
CUG	chr19:2270195-2270431(+)$1	236	23	26	8.9999
CUG	chr6:42981911-42982182(+)$1	271	27	30	8.9999
CUG	chr14:94849182-94849437(-)$1	255	22	25	8.9999
CUG	chr1:201103999-201104241(-)$1	242	13	16	8.9999
CUG	chr12:123997837-123998097(-)$1	260	16	19	8.9999
CUG	chr19:4038174-4038426(+)$1	252	71	74	8.9999
cug	chr17:80477550-80477817(+)$1	267	151	154	8.9999
CUG	chr11:64014049-64014310(-)$1	261	14	17	8.9999
CUG	chr7:156931672-156931985(+)$1	313	16	19	8.9999
CUG	chr19:14551859-14552125(+)$1	266	20	23	8.9999
CUG	chr7:1036611-1036897(-)$1	286	8	11	8.9999
CUG	chr9:139730321-139730589(+)$1	268	14	17	8.9999
CUG	chrX:20284774-20285016(-)$1	242	52	55	8.9999
CUG	chr11:70116720-70117070(+)$1	350	38	41	8.9999
CUG	chr17:7477031-7477316(+)$1	285	86	89	8.9999
CUG	chr7:933229-933500(+)$1	271	104	107	8.9999
cug	chr1:1284352-1284629(-)$1	277	30	33	8.9999
CUG	chr11:111896272-111896536(+)$1	264	36	39	8.9999
CUG	chr19:54971701-54971950(+)$1	249	6	9	8.9999
cug	chr6:170123996-170124245(-)$1	249	8	11	8.9999
CUG	chr7:150778160-150778462(-)$1	302	31	34	8.9999
CUG	chr7:100171074-100171355(-)$1	281	82	85	8.9999
CUG	chr2:10588220-10588472(-)$1	252	30	33	8.9999
CUG	chr12:123998038-123998279(-)$1	241	40	43	8.9999
CUG	chr12:132402733-132403010(+)$1	277	6	9	8.9999
CUG	chr9:139702318-139702567(+)$1	249	92	95	8.9999
CUG	chr5:154135053-154135313(+)$1	260	28	31	8.9999
cug	chr3:33481515-33481766(-)$1	251	129	132	8.9999
CUG	chr11:770339-770639(-)$1	300	7	10	8.9999
CUG	chr16:89367078-89367334(-)$1	256	34	37	8.9999
cug	chr19:2425561-2425807(-)$1	246	3	6	8.9999
CUG	chr16:89980254-89980515(+)$1	261	5	8	8.9999
CUG	chr17:40351542-40351835(-)$1	293	31	34	8.9999
CUG	chr17:40351641-40351880(-)$1	239	4	7	8.9999
CUG	chr4:74270005-74270214(+)$1	209	12	15	8.9999
CUG	chr17:40351685-40351940(-)$1	255	11	14	8.9999
CUG	chr2:21266761-21267027(-)$1	266	27	30	8.9999
CUG	chr19:41859577-41859817(-)$1	240	11	14	8.9999
CUG	chr8:142441405-142441667(+)$1	262	15	18	8.9999
CUG	chr4:74279036-74279240(+)$1	204	20	23	8.9999
CUG	chr19:2270267-2270511(+)$1	244	11	14	8.9999
CUG	chr9:139743356-139743618(+)$1	262	171	174	8.9999
CUG	chr22:50018090-50018335(-)$1	245	12	15	8.9999
CUG	chr17:79879790-79880035(-)$1	245	37	40	8.9999
cug	chr16:89980748-89981028(+)$1	280	14	17	8.9999
CUG	chr17:38153988-38154257(+)$1	269	31	34	8.9999
CUG	chr12:123756066-123756314(-)$1	248	61	64	8.9999
cug	chr2:159313482-159313804(+)$1	322	0	3	8.9999
CUG	chr2:216300520-216300801(-)$1	281	21	24	8.9999
CUG	chr19:2425983-2426256(-)$1	273	10	13	8.9999
cug	chr4:74283705-74283943(+)$1	238	19	22	8.9999
CUG	chr3:133474135-133474436(+)$1	301	20	23	8.9999
CUG	chr9:79009073-79009363(-)$1	290	32	35	8.9999
CUG	chr19:50985390-50985643(+)$1	253	9	12	8.9999
CUG	chr9:139560091-139560352(+)$1	261	47	50	8.9999
cug	chr3:52567610-52567866(-)$1	256	71	74	8.9999
CUG	chr6:62284046-62284284(+)$1	238	47	50	8.9999
CUG	chr16:2043101-2043399(+)$1	298	128	131	8.9999
CUG	chr22:21982894-21983127(-)$1	233	18	21	8.9999
CUG	chr2:97534061-97534319(-)$1	258	25	28	8.9999
CUG	chr22:50016237-50016477(-)$1	240	7	10	8.9999
CUG	chr19:18433727-18433995(-)$1	268	41	44	8.9999
CUG	chr19:59056284-59056560(+)$1	276	14	17	8.9999
cug	chr6:168227628-168227905(+)$1	277	5	8	8.9999
CUG	chr17:75212403-75212676(+)$1	273	136	139	8.9999
CUG	chr9:116822419-116822650(-)$1	231	19	22	8.9999
CUg	chr16:89556637-89556892(-)$1	255	97	100	8.9999
CUG	chrX:152953467-152953738(+)$1	271	132	135	8.9999
CUG	chr16:29821450-29821669(+)$1	219	31	34	8.9999
CUG	chr9:19380090-19380332(-)$1	242	39	42	8.9999
cUG	chr1:201104063-201104303(-)$1	240	15	18	8.9999
CUG	chr17:7154514-7154776(-)$1	262	13	16	8.9999
CUG	chr12:49666592-49666876(+)$1	284	12	15	8.9999
CUG	chr2:10588154-10588409(-)$1	255	0	3	8.9999
cUG	chr12:116714992-116715235(-)$1	243	32	35	8.9999
CUG	chr20:62331382-62331632(-)$1	250	31	34	8.9999
CUG	chr1:2126017-2126311(-)$1	294	7	10	8.9999
CUG	chr9:140175279-140175523(+)$1	244	22	25	8.9999
CUG	chr11:65658089-65658331(+)$1	242	29	32	8.9999
CUG	chr19:2425720-2425989(-)$1	269	36	39	8.9999
CUG	chr17:75211498-75211788(+)$1	290	19	22	8.9999
CUG	chr3:133476588-133476891(+)$1	303	6	9	8.9999
cug	chrX:153686584-153686856(+)$1	272	61	64	8.9999
CUG	chr3:133472376-133472637(+)$1	261	43	46	8.9999
CUG	chr15:91445894-91446143(+)$1	249	7	10	8.9999
CUG	chr16:89006338-89006582(-)$1	244	2	5	8.9999
cug	chr19:1205989-1206266(+)$1	277	20	23	8.9999
CUG	chr5:154135174-154135469(+)$1	295	23	26	8.9999
CUG	chr11:67053563-67053830(+)$1	267	54	57	8.9999
CUG	chr19:1205896-1206156(+)$1	260	8	11	8.9999
CUG	chr22:19711744-19712005(+)$1	261	3	6	8.9999
CUG	chr19:16187748-16187998(+)$1	250	103	106	8.9999
CUG	chr20:34252567-34252897(-)$1	330	41	44	8.9999
CUG	chr1:228675175-228675445(+)$1	270	14	17	8.9999
cug	chr6:86352570-86352822(-)$1	252	28	31	8.9999

#otherMatches

#Struct PSSM
ddc	chr3:20081790-20082102(+)$1	312	123	126	8.9999
===	chr5:139059858-139060154(+)$1	296	57	60	8.9999
VVV	chr19:2270195-2270431(+)$1	236	23	26	8.9999
C{F	chr6:42981911-42982182(+)$1	271	27	30	8.9999
GGG	chr14:94849182-94849437(-)$1	255	22	25	8.9999
f[c	chr1:201103999-201104241(-)$1	242	13	16	8.9999
$$$	chr12:123997837-123998097(-)$1	260	16	19	8.9999
###	chr19:4038174-4038426(+)$1	252	71	74	8.9999
e:d	chr17:80477550-80477817(+)$1	267	151	154	8.9999
C{B	chr11:64014049-64014310(-)$1	261	14	17	8.9999
nnd	chr7:156931672-156931985(+)$1	313	16	19	8.9999
ggg	chr19:14551859-14552125(+)$1	266	20	23	8.9999
fff	chr7:1036611-1036897(-)$1	286	8	11	8.9999
III	chr9:139730321-139730589(+)$1	268	14	17	8.9999
GGK	chrX:20284774-20285016(-)$1	242	52	55	8.9999
iii	chr11:70116720-70117070(+)$1	350	38	41	8.9999
]bb	chr17:7477031-7477316(+)$1	285	86	89	8.9999
ooo	chr7:933229-933500(+)$1	271	104	107	8.9999
hhh	chr1:1284352-1284629(-)$1	277	30	33	8.9999
:::	chr11:111896272-111896536(+)$1	264	36	39	8.9999
ddd	chr19:54971701-54971950(+)$1	249	6	9	8.9999
EEE	chr6:170123996-170124245(-)$1	249	8	11	8.9999
b[e	chr7:150778160-150778462(-)$1	302	31	34	8.9999
ccc	chr7:100171074-100171355(-)$1	281	82	85	8.9999
:ii	chr2:10588220-10588472(-)$1	252	30	33	8.9999
ddd	chr12:123998038-123998279(-)$1	241	40	43	8.9999
ccc	chr12:132402733-132403010(+)$1	277	6	9	8.9999
cc!	chr9:139702318-139702567(+)$1	249	92	95	8.9999
ee!	chr5:154135053-154135313(+)$1	260	28	31	8.9999
a[i	chr3:33481515-33481766(-)$1	251	129	132	8.9999
HHH	chr11:770339-770639(-)$1	300	7	10	8.9999
F:b	chr16:89367078-89367334(-)$1	256	34	37	8.9999
ddd	chr19:2425561-2425807(-)$1	246	3	6	8.9999
C:d	chr16:89980254-89980515(+)$1	261	5	8	8.9999
c[d	chr17:40351542-40351835(-)$1	293	31	34	8.9999
hhh	chr17:40351641-40351880(-)$1	239	4	7	8.9999
:::	chr4:74270005-74270214(+)$1	209	12	15	8.9999
:::	chr17:40351685-40351940(-)$1	255	11	14	8.9999
44e	chr2:21266761-21267027(-)$1	266	27	30	8.9999
CC{	chr19:41859577-41859817(-)$1	240	11	14	8.9999
nee	chr8:142441405-142441667(+)$1	262	15	18	8.9999
ggg	chr4:74279036-74279240(+)$1	204	20	23	8.9999
CCd	chr19:2270267-2270511(+)$1	244	11	14	8.9999
eem	chr9:139743356-139743618(+)$1	262	171	174	8.9999
fff	chr22:50018090-50018335(-)$1	245	12	15	8.9999
iii	chr17:79879790-79880035(-)$1	245	37	40	8.9999
FF:	chr16:89980748-89981028(+)$1	280	14	17	8.9999
nnb	chr17:38153988-38154257(+)$1	269	31	34	8.9999
iii	chr12:123756066-123756314(-)$1	248	61	64	8.9999
:::	chr2:159313482-159313804(+)$1	322	0	3	8.9999
::c	chr2:216300520-216300801(-)$1	281	21	24	8.9999
[gg	chr19:2425983-2426256(-)$1	273	10	13	8.9999
!gg	chr4:74283705-74283943(+)$1	238	19	22	8.9999
FF{	chr3:133474135-133474436(+)$1	301	20	23	8.9999
::=	chr9:79009073-79009363(-)$1	290	32	35	8.9999
ppp	chr19:50985390-50985643(+)$1	253	9	12	8.9999
hh[	chr9:139560091-139560352(+)$1	261	47	50	8.9999
fff	chr3:52567610-52567866(-)$1	256	71	74	8.9999
Cee	chr6:62284046-62284284(+)$1	238	47	50	8.9999
ggg	chr16:2043101-2043399(+)$1	298	128	131	8.9999
F:b	chr22:21982894-21983127(-)$1	233	18	21	8.9999
ccc	chr2:97534061-97534319(-)$1	258	25	28	8.9999
::E	chr22:50016237-50016477(-)$1	240	7	10	8.9999
mmm	chr19:18433727-18433995(-)$1	268	41	44	8.9999
DDL	chr19:59056284-59056560(+)$1	276	14	17	8.9999
BB{	chr6:168227628-168227905(+)$1	277	5	8	8.9999
mmh	chr17:75212403-75212676(+)$1	273	136	139	8.9999
ddd	chr9:116822419-116822650(-)$1	231	19	22	8.9999
FFF	chr16:89556637-89556892(-)$1	255	97	100	8.9999
===	chrX:152953467-152953738(+)$1	271	132	135	8.9999
mmd	chr16:29821450-29821669(+)$1	219	31	34	8.9999
###	chr9:19380090-19380332(-)$1	242	39	42	8.9999
JJJ	chr1:201104063-201104303(-)$1	240	15	18	8.9999
lli	chr17:7154514-7154776(-)$1	262	13	16	8.9999
nnc	chr12:49666592-49666876(+)$1	284	12	15	8.9999
EEE	chr2:10588154-10588409(-)$1	255	0	3	8.9999
DDD	chr12:116714992-116715235(-)$1	243	32	35	8.9999
DD{	chr20:62331382-62331632(-)$1	250	31	34	8.9999
nnn	chr1:2126017-2126311(-)$1	294	7	10	8.9999
[cc	chr9:140175279-140175523(+)$1	244	22	25	8.9999
EE{	chr11:65658089-65658331(+)$1	242	29	32	8.9999
eee	chr19:2425720-2425989(-)$1	269	36	39	8.9999
FFF	chr17:75211498-75211788(+)$1	290	19	22	8.9999
FFF	chr3:133476588-133476891(+)$1	303	6	9	8.9999
iii	chrX:153686584-153686856(+)$1	272	61	64	8.9999
:::	chr3:133472376-133472637(+)$1	261	43	46	8.9999
ccc	chr15:91445894-91446143(+)$1	249	7	10	8.9999
DD:	chr16:89006338-89006582(-)$1	244	2	5	8.9999
FFF	chr19:1205989-1206266(+)$1	277	20	23	8.9999
===	chr5:154135174-154135469(+)$1	295	23	26	8.9999
KKE	chr11:67053563-67053830(+)$1	267	54	57	8.9999
d[a	chr19:1205896-1206156(+)$1	260	8	11	8.9999
!!b	chr22:19711744-19712005(+)$1	261	3	6	8.9999
mmm	chr19:16187748-16187998(+)$1	250	103	106	8.9999
sse	chr20:34252567-34252897(-)$1	330	41	44	8.9999
ggg	chr1:228675175-228675445(+)$1	270	14	17	8.9999
GGG	chr6:86352570-86352822(-)$1	252	28	31	8.9999

#DB
))(	chr3:20081790-20082102(+)$1	1	123	126	8.9999
)))	chr5:139059858-139060154(+)$1	1	57	60	8.9999
...	chr19:2270195-2270431(+)$1	1	23	26	8.9999
(.(	chr6:42981911-42982182(+)$1	1	27	30	8.9999
(((	chr14:94849182-94849437(-)$1	1	22	25	8.9999
(.(	chr1:201103999-201104241(-)$1	1	13	16	8.9999
...	chr12:123997837-123998097(-)$1	1	16	19	8.9999
...	chr19:4038174-4038426(+)$1	1	71	74	8.9999
).(	chr17:80477550-80477817(+)$1	1	151	154	8.9999
(.(	chr11:64014049-64014310(-)$1	1	14	17	8.9999
..)	chr7:156931672-156931985(+)$1	1	16	19	8.9999
)))	chr19:14551859-14552125(+)$1	1	20	23	8.9999
(((	chr7:1036611-1036897(-)$1	1	8	11	8.9999
(((	chr9:139730321-139730589(+)$1	1	14	17	8.9999
((.	chrX:20284774-20285016(-)$1	1	52	55	8.9999
(((	chr11:70116720-70117070(+)$1	1	38	41	8.9999
.))	chr17:7477031-7477316(+)$1	1	86	89	8.9999
...	chr7:933229-933500(+)$1	1	104	107	8.9999
(((	chr1:1284352-1284629(-)$1	1	30	33	8.9999
...	chr11:111896272-111896536(+)$1	1	36	39	8.9999
(((	chr19:54971701-54971950(+)$1	1	6	9	8.9999
(((	chr6:170123996-170124245(-)$1	1	8	11	8.9999
(.(	chr7:150778160-150778462(-)$1	1	31	34	8.9999
(((	chr7:100171074-100171355(-)$1	1	82	85	8.9999
.((	chr2:10588220-10588472(-)$1	1	30	33	8.9999
)))	chr12:123998038-123998279(-)$1	1	40	43	8.9999
(((	chr12:132402733-132403010(+)$1	1	6	9	8.9999
((.	chr9:139702318-139702567(+)$1	1	92	95	8.9999
((.	chr5:154135053-154135313(+)$1	1	28	31	8.9999
(.(	chr3:33481515-33481766(-)$1	1	129	132	8.9999
(((	chr11:770339-770639(-)$1	1	7	10	8.9999
(.(	chr16:89367078-89367334(-)$1	1	34	37	8.9999
(((	chr19:2425561-2425807(-)$1	1	3	6	8.9999
(.(	chr16:89980254-89980515(+)$1	1	5	8	8.9999
(.(	chr17:40351542-40351835(-)$1	1	31	34	8.9999
(((	chr17:40351641-40351880(-)$1	1	4	7	8.9999
...	chr4:74270005-74270214(+)$1	1	12	15	8.9999
...	chr17:40351685-40351940(-)$1	1	11	14	8.9999
..)	chr2:21266761-21267027(-)$1	1	27	30	8.9999
((.	chr19:41859577-41859817(-)$1	1	11	14	8.9999
.))	chr8:142441405-142441667(+)$1	1	15	18	8.9999
)))	chr4:74279036-74279240(+)$1	1	20	23	8.9999
(((	chr19:2270267-2270511(+)$1	1	11	14	8.9999
((.	chr9:139743356-139743618(+)$1	1	171	174	8.9999
(((	chr22:50018090-50018335(-)$1	1	12	15	8.9999
(((	chr17:79879790-79880035(-)$1	1	37	40	8.9999
((.	chr16:89980748-89981028(+)$1	1	14	17	8.9999
..)	chr17:38153988-38154257(+)$1	1	31	34	8.9999
(((	chr12:123756066-123756314(-)$1	1	61	64	8.9999
...	chr2:159313482-159313804(+)$1	1	0	3	8.9999
..(	chr2:216300520-216300801(-)$1	1	21	24	8.9999
.((	chr19:2425983-2426256(-)$1	1	10	13	8.9999
.((	chr4:74283705-74283943(+)$1	1	19	22	8.9999
((.	chr3:133474135-133474436(+)$1	1	20	23	8.9999
..(	chr9:79009073-79009363(-)$1	1	32	35	8.9999
...	chr19:50985390-50985643(+)$1	1	9	12	8.9999
((.	chr9:139560091-139560352(+)$1	1	47	50	8.9999
(((	chr3:52567610-52567866(-)$1	1	71	74	8.9999
(((	chr6:62284046-62284284(+)$1	1	47	50	8.9999
(((	chr16:2043101-2043399(+)$1	1	128	131	8.9999
(.(	chr22:21982894-21983127(-)$1	1	18	21	8.9999
)))	chr2:97534061-97534319(-)$1	1	25	28	8.9999
..(	chr22:50016237-50016477(-)$1	1	7	10	8.9999
...	chr19:18433727-18433995(-)$1	1	41	44	8.9999
((.	chr19:59056284-59056560(+)$1	1	14	17	8.9999
((.	chr6:168227628-168227905(+)$1	1	5	8	8.9999
..)	chr17:75212403-75212676(+)$1	1	136	139	8.9999
(((	chr9:116822419-116822650(-)$1	1	19	22	8.9999
(((	chr16:89556637-89556892(-)$1	1	97	100	8.9999
)))	chrX:152953467-152953738(+)$1	1	132	135	8.9999
..)	chr16:29821450-29821669(+)$1	1	31	34	8.9999
...	chr9:19380090-19380332(-)$1	1	39	42	8.9999
(((	chr1:201104063-201104303(-)$1	1	15	18	8.9999
..)	chr17:7154514-7154776(-)$1	1	13	16	8.9999
..)	chr12:49666592-49666876(+)$1	1	12	15	8.9999
(((	chr2:10588154-10588409(-)$1	1	0	3	8.9999
(((	chr12:116714992-116715235(-)$1	1	32	35	8.9999
((.	chr20:62331382-62331632(-)$1	1	31	34	8.9999
...	chr1:2126017-2126311(-)$1	1	7	10	8.9999
.((	chr9:140175279-140175523(+)$1	1	22	25	8.9999
((.	chr11:65658089-65658331(+)$1	1	29	32	8.9999
(((	chr19:2425720-2425989(-)$1	1	36	39	8.9999
(((	chr17:75211498-75211788(+)$1	1	19	22	8.9999
(((	chr3:133476588-133476891(+)$1	1	6	9	8.9999
)))	chrX:153686584-153686856(+)$1	1	61	64	8.9999
...	chr3:133472376-133472637(+)$1	1	43	46	8.9999
(((	chr15:91445894-91446143(+)$1	1	7	10	8.9999
((.	chr16:89006338-89006582(-)$1	1	2	5	8.9999
(((	chr19:1205989-1206266(+)$1	1	20	23	8.9999
(((	chr5:154135174-154135469(+)$1	1	23	26	8.9999
..(	chr11:67053563-67053830(+)$1	1	54	57	8.9999
(.(	chr19:1205896-1206156(+)$1	1	8	11	8.9999
..(	chr22:19711744-19712005(+)$1	1	3	6	8.9999
...	chr19:16187748-16187998(+)$1	1	103	106	8.9999
..)	chr20:34252567-34252897(-)$1	1	41	44	8.9999
(((	chr1:228675175-228675445(+)$1	1	14	17	8.9999
(((	chr6:86352570-86352822(-)$1	1	28	31	8.9999

#PSSM
C : 0.84	c : 0.15	
U : 0.86	u : 0.13	
G : 0.85	g : 0.14	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_CDS_m3_run1.nuc.txt

#NT
AUG	chr6:13622559-13622821(-)$1	262	39	42	8.9999
AUG	chr12:53860941-53861173(+)$1	232	1	4	8.9999
AUG	chr5:126862208-126862501(+)$1	293	1	4	8.9999
AUG	chr4:83860641-83860988(-)$1	347	82	85	8.9999
AUG	chr9:108483716-108484005(+)$1	289	80	83	8.9999
AUG	chr1:19503995-19504216(-)$1	221	2	5	8.9999
AUG	chr7:6094091-6094363(-)$1	272	34	37	8.9999
AUG	chr6:150004502-150004777(-)$1	275	53	56	8.9999
AUG	chr5:10680810-10681150(-)$1	340	7	10	8.9999
AUG	chr17:65940164-65940453(+)$1	289	28	31	8.9999
AUG	chr3:100463657-100463876(+)$1	219	24	27	8.9999
AUG	chr10:7844178-7844444(+)$1	266	59	62	8.9999
AUG	chr1:231506207-231506461(-)$1	254	126	129	8.9999
aug	chr22:20918842-20919075(+)$1	233	28	31	8.9999
AUG	chr1:202302489-202302776(-)$1	287	35	38	8.9999
AUG	chr7:10973199-10973420(-)$1	221	114	117	8.9999
AUG	chr6:64395335-64395668(+)$1	333	140	143	8.9999
AUG	chr7:104750871-104751148(+)$1	277	17	20	8.9999
AUG	chr1:183514069-183514328(+)$1	259	13	16	8.9999
AUG	chr8:109252141-109252405(-)$1	264	39	42	8.9999
AUG	chr3:33165906-33166167(+)$1	261	56	59	8.9999
AUG	chr1:19504016-19504235(-)$1	219	11	14	8.9999
AUG	chr5:85915177-85915413(+)$1	236	37	40	8.9999
AUG	chr2:65325032-65325301(-)$1	269	102	105	8.9999
AUG	chr2:223773588-223773845(+)$1	257	125	128	8.9999
AUG	chr2:178096495-178096747(-)$1	252	5	8	8.9999
AUG	chr12:53862470-53862685(+)$1	215	25	28	8.9999
AUG	chrX:77160611-77160919(+)$1	308	92	95	8.9999
AUG	chr5:71489672-71489972(+)$1	300	176	179	8.9999
AUG	chr1:111999213-111999459(+)$1	246	93	96	8.9999
AUG	chr12:51173838-51174122(+)$1	284	14	17	8.9999
AUG	chr1:47746061-47746325(-)$1	264	87	90	8.9999
AUG	chr10:70404899-70405162(+)$1	263	17	20	8.9999
AUG	chr13:47356789-47357026(-)$1	237	6	9	8.9999
AUG	chr2:159477670-159477941(+)$1	271	104	107	8.9999
AUG	chr15:59399653-59399962(+)$1	309	2	5	8.9999
AUG	chr14:81670143-81670414(-)$1	271	3	6	8.9999
AUG	chr1:1500050-1500309(-)$1	259	90	93	8.9999
AUG	chr18:29703380-29703605(+)$1	225	25	28	8.9999
AUG	chr5:95091202-95091513(+)$1	311	50	53	8.9999
AUG	chr8:101721301-101721513(-)$1	212	41	44	8.9999
AUG	chr1:47746125-47746413(-)$1	288	36	39	8.9999
AUG	chr1:52257149-52257396(-)$1	247	21	24	8.9999
AUG	chr6:17647951-17648195(-)$1	244	65	68	8.9999
AUG	chr12:7044876-7045161(+)$1	285	137	140	8.9999
AUG	chr1:150938967-150939206(-)$1	239	174	177	8.9999
AUG	chr17:30693655-30693877(+)$1	222	19	22	8.9999
AUG	chr6:135524260-135524563(+)$1	303	36	39	8.9999
AUG	chr7:120935513-120935790(+)$1	277	22	25	8.9999
AUG	chr1:154229727-154229968(+)$1	241	25	28	8.9999
AUG	chr18:9122475-9122780(+)$1	305	18	21	8.9999
AUG	chr1:150938901-150939143(-)$1	242	111	114	8.9999
AUG	chr2:26456983-26457247(-)$1	264	11	14	8.9999
AUG	chr6:42986782-42987003(+)$1	221	73	76	8.9999
aug	chr9:130950104-130950313(-)$1	209	6	9	8.9999
AUG	chr1:109952448-109952737(-)$1	289	104	107	8.9999
AUG	chr2:61577612-61577846(-)$1	234	43	46	8.9999
AUG	chr6:64422727-64423021(+)$1	294	66	69	8.9999
AUG	chr6:159004885-159005176(+)$1	291	38	41	8.9999
AUG	chr16:2813116-2813418(+)$1	302	285	288	8.9999
AUG	chr12:104327849-104328090(+)$1	241	4	7	8.9999
AUG	chr8:116616894-116617182(-)$1	288	52	55	8.9999
AUG	chr3:100466892-100467169(+)$1	277	76	79	8.9999
AUG	chr10:35818800-35819020(+)$1	220	28	31	8.9999
AUG	chr11:118376339-118376590(+)$1	251	16	19	8.9999
AUG	chr16:58614455-58614744(-)$1	289	51	54	8.9999
AUG	chrX:53575082-53575334(-)$1	252	186	189	8.9999
AUG	chr13:28004568-28004849(+)$1	281	174	177	8.9999
AUG	chr7:120767139-120767365(+)$1	226	32	35	8.9999
AUG	chr12:56502920-56503160(+)$1	240	19	22	8.9999
AUG	chr11:63520440-63520679(+)$1	239	6	9	8.9999
AUG	chrX:119575569-119575849(-)$1	280	54	57	8.9999
AUG	chr5:154174769-154174979(+)$1	210	20	23	8.9999
AUG	chr12:46244721-46244958(+)$1	237	0	3	8.9999
AUG	chr1:31438803-31439086(-)$1	283	21	24	8.9999
AUG	chr11:61732867-61733087(-)$1	220	119	122	8.9999
AUG	chr18:9936092-9936310(+)$1	218	16	19	8.9999
AUG	chr9:86276708-86276936(-)$1	228	24	27	8.9999
AUG	chr1:115276252-115276517(-)$1	265	58	61	8.9999
AUG	chr9:86293304-86293615(-)$1	311	18	21	8.9999
AUG	chr7:135269585-135269855(+)$1	270	18	21	8.9999
AUG	chr4:83769856-83770074(-)$1	218	5	8	8.9999
AUG	chr5:36955577-36955840(+)$1	263	59	62	8.9999
AUG	chr1:202987508-202987736(+)$1	228	148	151	8.9999
AUG	chr1:51005244-51005478(-)$1	234	1	4	8.9999
AUG	chr13:39587908-39588134(-)$1	226	181	184	8.9999
AUG	chr1:244868821-244869069(+)$1	248	178	181	8.9999
AUG	chr16:47549331-47549610(+)$1	279	12	15	8.9999
AUG	chr21:47704925-47705195(-)$1	270	56	59	8.9999
AUG	chr2:169707531-169707793(+)$1	262	0	3	8.9999
AUG	chr8:15531166-15531444(+)$1	278	8	11	8.9999
AUG	chr15:44951279-44951589(-)$1	310	29	32	8.9999
AUG	chr3:63999014-63999369(-)$1	355	103	106	8.9999
AUG	chr16:68160347-68160599(+)$1	252	54	57	8.9999
AUG	chr6:88321704-88322026(+)$1	322	30	33	8.9999
AUG	chr2:136673788-136674042(-)$1	254	139	142	8.9999

#otherMatches

#Struct PSSM
III	chr8:109240440-109240655(-)$1	215	10	13	8.9999
d[b	chr6:13622559-13622821(-)$1	262	39	42	8.9999
:CC	chr12:53860941-53861173(+)$1	232	1	4	8.9999
:::	chr5:126862208-126862501(+)$1	293	1	4	8.9999
:::	chr4:83860641-83860988(-)$1	347	82	85	8.9999
fff	chr9:108483716-108484005(+)$1	289	80	83	8.9999
:cc	chr1:19503995-19504216(-)$1	221	2	5	8.9999
LJJ	chr7:6094091-6094363(-)$1	272	34	37	8.9999
]cc	chr6:150004502-150004777(-)$1	275	53	56	8.9999
FFF	chr5:10680810-10681150(-)$1	340	7	10	8.9999
bb[	chr17:65940164-65940453(+)$1	289	28	31	8.9999
:gg	chr3:100463657-100463876(+)$1	219	24	27	8.9999
ff[	chr10:7844178-7844444(+)$1	266	59	62	8.9999
[dd	chr1:231506207-231506461(-)$1	254	126	129	8.9999
EEE	chr22:20918842-20919075(+)$1	233	28	31	8.9999
ggg	chr1:202302489-202302776(-)$1	287	35	38	8.9999
dd]	chr7:10973199-10973420(-)$1	221	114	117	8.9999
ddd	chr6:64395335-64395668(+)$1	333	140	143	8.9999
EEH	chr7:104750871-104751148(+)$1	277	17	20	8.9999
ggg	chr1:183514069-183514328(+)$1	259	13	16	8.9999
GGG	chr8:109252141-109252405(-)$1	264	39	42	8.9999
::d	chr3:33165906-33166167(+)$1	261	56	59	8.9999
:::	chr1:19504016-19504235(-)$1	219	11	14	8.9999
JJJ	chr5:85915177-85915413(+)$1	236	37	40	8.9999
c]d	chr2:65325032-65325301(-)$1	269	102	105	8.9999
]ff	chr2:223773588-223773845(+)$1	257	125	128	8.9999
e!!	chr2:178096495-178096747(-)$1	252	5	8	8.9999
::c	chr12:53862470-53862685(+)$1	215	25	28	8.9999
ggg	chrX:77160611-77160919(+)$1	308	92	95	8.9999
ggg	chr5:71489672-71489972(+)$1	300	176	179	8.9999
vvv	chr1:111999213-111999459(+)$1	246	93	96	8.9999
:::	chr12:51173838-51174122(+)$1	284	14	17	8.9999
ddd	chr1:47746061-47746325(-)$1	264	87	90	8.9999
:dd	chr10:70404899-70405162(+)$1	263	17	20	8.9999
fff	chr13:47356789-47357026(-)$1	237	6	9	8.9999
pdd	chr2:159477670-159477941(+)$1	271	104	107	8.9999
GGG	chr15:59399653-59399962(+)$1	309	2	5	8.9999
EEE	chr14:81670143-81670414(-)$1	271	3	6	8.9999
::d	chr1:1500050-1500309(-)$1	259	90	93	8.9999
f[f	chr18:29703380-29703605(+)$1	225	25	28	8.9999
ccc	chr5:95091202-95091513(+)$1	311	50	53	8.9999
EDD	chr8:101721301-101721513(-)$1	212	41	44	8.9999
c:B	chr1:47746125-47746413(-)$1	288	36	39	8.9999
qqq	chr1:52257149-52257396(-)$1	247	21	24	8.9999
KBB	chr6:17647951-17648195(-)$1	244	65	68	8.9999
c]c	chr12:7044876-7045161(+)$1	285	137	140	8.9999
occ	chr1:150938967-150939206(-)$1	239	174	177	8.9999
::c	chr17:30693655-30693877(+)$1	222	19	22	8.9999
fff	chr6:135524260-135524563(+)$1	303	36	39	8.9999
ddd	chr7:120935513-120935790(+)$1	277	22	25	8.9999
GGG	chr1:154229727-154229968(+)$1	241	25	28	8.9999
:::	chr18:9122475-9122780(+)$1	305	18	21	8.9999
occ	chr1:150938901-150939143(-)$1	242	111	114	8.9999
[bb	chr2:26456983-26457247(-)$1	264	11	14	8.9999
hhh	chr6:42986782-42987003(+)$1	221	73	76	8.9999
ABB	chr9:130950104-130950313(-)$1	209	6	9	8.9999
llc	chr1:109952448-109952737(-)$1	289	104	107	8.9999
]ee	chr2:61577612-61577846(-)$1	234	43	46	8.9999
d]b	chr6:64422727-64423021(+)$1	294	66	69	8.9999
cc=	chr6:159004885-159005176(+)$1	291	38	41	8.9999
ZEE	chr16:2813116-2813418(+)$1	302	285	288	8.9999
:::	chr12:104327849-104328090(+)$1	241	4	7	8.9999
::D	chr8:116616894-116617182(-)$1	288	52	55	8.9999
qqq	chr3:100466892-100467169(+)$1	277	76	79	8.9999
ggg	chr10:35818800-35819020(+)$1	220	28	31	8.9999
GGG	chr11:118376339-118376590(+)$1	251	16	19	8.9999
:GG	chr16:58614455-58614744(-)$1	289	51	54	8.9999
CCC	chrX:53575082-53575334(-)$1	252	186	189	8.9999
ddd	chr13:28004568-28004849(+)$1	281	174	177	8.9999
ttt	chr7:120767139-120767365(+)$1	226	32	35	8.9999
::C	chr12:56502920-56503160(+)$1	240	19	22	8.9999
{HH	chr11:63520440-63520679(+)$1	239	6	9	8.9999
GGG	chrX:119575569-119575849(-)$1	280	54	57	8.9999
$$c	chr5:154174769-154174979(+)$1	210	20	23	8.9999
::b	chr12:46244721-46244958(+)$1	237	0	3	8.9999
33g	chr1:31438803-31439086(-)$1	283	21	24	8.9999
b[c	chr11:61732867-61733087(-)$1	220	119	122	8.9999
KII	chr18:9936092-9936310(+)$1	218	16	19	8.9999
:::	chr9:86276708-86276936(-)$1	228	24	27	8.9999
77f	chr1:115276252-115276517(-)$1	265	58	61	8.9999
ccm	chr9:86293304-86293615(-)$1	311	18	21	8.9999
###	chr7:135269585-135269855(+)$1	270	18	21	8.9999
sss	chr4:83769856-83770074(-)$1	218	5	8	8.9999
000	chr5:36955577-36955840(+)$1	263	59	62	8.9999
bb[	chr1:202987508-202987736(+)$1	228	148	151	8.9999
:ff	chr1:51005244-51005478(-)$1	234	1	4	8.9999
555	chr13:39587908-39588134(-)$1	226	181	184	8.9999
ooo	chr1:244868821-244869069(+)$1	248	178	181	8.9999
eee	chr16:47549331-47549610(+)$1	279	12	15	8.9999
ccc	chr21:47704925-47705195(-)$1	270	56	59	8.9999
:ee	chr2:169707531-169707793(+)$1	262	0	3	8.9999
DDK	chr8:15531166-15531444(+)$1	278	8	11	8.9999
ddd	chr15:44951279-44951589(-)$1	310	29	32	8.9999
ggg	chr3:63999014-63999369(-)$1	355	103	106	8.9999
""d	chr16:68160347-68160599(+)$1	252	54	57	8.9999
:::	chr6:88321704-88322026(+)$1	322	30	33	8.9999
!!b	chr2:136673788-136674042(-)$1	254	139	142	8.9999

#DB
(((	chr8:109240440-109240655(-)$1	1	10	13	8.9999
(.(	chr6:13622559-13622821(-)$1	1	39	42	8.9999
.((	chr12:53860941-53861173(+)$1	1	1	4	8.9999
...	chr5:126862208-126862501(+)$1	1	1	4	8.9999
...	chr4:83860641-83860988(-)$1	1	82	85	8.9999
(((	chr9:108483716-108484005(+)$1	1	80	83	8.9999
.((	chr1:19503995-19504216(-)$1	1	2	5	8.9999
.((	chr7:6094091-6094363(-)$1	1	34	37	8.9999
.))	chr6:150004502-150004777(-)$1	1	53	56	8.9999
(((	chr5:10680810-10681150(-)$1	1	7	10	8.9999
((.	chr17:65940164-65940453(+)$1	1	28	31	8.9999
.((	chr3:100463657-100463876(+)$1	1	24	27	8.9999
((.	chr10:7844178-7844444(+)$1	1	59	62	8.9999
.((	chr1:231506207-231506461(-)$1	1	126	129	8.9999
(((	chr22:20918842-20919075(+)$1	1	28	31	8.9999
(((	chr1:202302489-202302776(-)$1	1	35	38	8.9999
)).	chr7:10973199-10973420(-)$1	1	114	117	8.9999
(((	chr6:64395335-64395668(+)$1	1	140	143	8.9999
(((	chr7:104750871-104751148(+)$1	1	17	20	8.9999
(((	chr1:183514069-183514328(+)$1	1	13	16	8.9999
(((	chr8:109252141-109252405(-)$1	1	39	42	8.9999
..(	chr3:33165906-33166167(+)$1	1	56	59	8.9999
...	chr1:19504016-19504235(-)$1	1	11	14	8.9999
(((	chr5:85915177-85915413(+)$1	1	37	40	8.9999
).)	chr2:65325032-65325301(-)$1	1	102	105	8.9999
.))	chr2:223773588-223773845(+)$1	1	125	128	8.9999
(..	chr2:178096495-178096747(-)$1	1	5	8	8.9999
..(	chr12:53862470-53862685(+)$1	1	25	28	8.9999
)))	chrX:77160611-77160919(+)$1	1	92	95	8.9999
)))	chr5:71489672-71489972(+)$1	1	176	179	8.9999
...	chr1:111999213-111999459(+)$1	1	93	96	8.9999
...	chr12:51173838-51174122(+)$1	1	14	17	8.9999
)))	chr1:47746061-47746325(-)$1	1	87	90	8.9999
.((	chr10:70404899-70405162(+)$1	1	17	20	8.9999
(((	chr13:47356789-47357026(-)$1	1	6	9	8.9999
.))	chr2:159477670-159477941(+)$1	1	104	107	8.9999
(((	chr15:59399653-59399962(+)$1	1	2	5	8.9999
(((	chr14:81670143-81670414(-)$1	1	3	6	8.9999
..(	chr1:1500050-1500309(-)$1	1	90	93	8.9999
(.(	chr18:29703380-29703605(+)$1	1	25	28	8.9999
(((	chr5:95091202-95091513(+)$1	1	50	53	8.9999
(((	chr8:101721301-101721513(-)$1	1	41	44	8.9999
).(	chr1:47746125-47746413(-)$1	1	36	39	8.9999
...	chr1:52257149-52257396(-)$1	1	21	24	8.9999
.((	chr6:17647951-17648195(-)$1	1	65	68	8.9999
).)	chr12:7044876-7045161(+)$1	1	137	140	8.9999
.))	chr1:150938967-150939206(-)$1	1	174	177	8.9999
..(	chr17:30693655-30693877(+)$1	1	19	22	8.9999
(((	chr6:135524260-135524563(+)$1	1	36	39	8.9999
(((	chr7:120935513-120935790(+)$1	1	22	25	8.9999
(((	chr1:154229727-154229968(+)$1	1	25	28	8.9999
...	chr18:9122475-9122780(+)$1	1	18	21	8.9999
.))	chr1:150938901-150939143(-)$1	1	111	114	8.9999
.((	chr2:26456983-26457247(-)$1	1	11	14	8.9999
)))	chr6:42986782-42987003(+)$1	1	73	76	8.9999
(((	chr9:130950104-130950313(-)$1	1	6	9	8.9999
..)	chr1:109952448-109952737(-)$1	1	104	107	8.9999
.))	chr2:61577612-61577846(-)$1	1	43	46	8.9999
).)	chr6:64422727-64423021(+)$1	1	66	69	8.9999
(((	chr6:159004885-159005176(+)$1	1	38	41	8.9999
.))	chr16:2813116-2813418(+)$1	1	285	288	8.9999
...	chr12:104327849-104328090(+)$1	1	4	7	8.9999
..(	chr8:116616894-116617182(-)$1	1	52	55	8.9999
...	chr3:100466892-100467169(+)$1	1	76	79	8.9999
(((	chr10:35818800-35819020(+)$1	1	28	31	8.9999
(((	chr11:118376339-118376590(+)$1	1	16	19	8.9999
.((	chr16:58614455-58614744(-)$1	1	51	54	8.9999
)))	chrX:53575082-53575334(-)$1	1	186	189	8.9999
(((	chr13:28004568-28004849(+)$1	1	174	177	8.9999
...	chr7:120767139-120767365(+)$1	1	32	35	8.9999
..(	chr12:56502920-56503160(+)$1	1	19	22	8.9999
.((	chr11:63520440-63520679(+)$1	1	6	9	8.9999
(((	chrX:119575569-119575849(-)$1	1	54	57	8.9999
..(	chr5:154174769-154174979(+)$1	1	20	23	8.9999
..(	chr12:46244721-46244958(+)$1	1	0	3	8.9999
..)	chr1:31438803-31439086(-)$1	1	21	24	8.9999
(.(	chr11:61732867-61733087(-)$1	1	119	122	8.9999
.((	chr18:9936092-9936310(+)$1	1	16	19	8.9999
...	chr9:86276708-86276936(-)$1	1	24	27	8.9999
..)	chr1:115276252-115276517(-)$1	1	58	61	8.9999
((.	chr9:86293304-86293615(-)$1	1	18	21	8.9999
...	chr7:135269585-135269855(+)$1	1	18	21	8.9999
...	chr4:83769856-83770074(-)$1	1	5	8	8.9999
...	chr5:36955577-36955840(+)$1	1	59	62	8.9999
((.	chr1:202987508-202987736(+)$1	1	148	151	8.9999
.((	chr1:51005244-51005478(-)$1	1	1	4	8.9999
...	chr13:39587908-39588134(-)$1	1	181	184	8.9999
...	chr1:244868821-244869069(+)$1	1	178	181	8.9999
(((	chr16:47549331-47549610(+)$1	1	12	15	8.9999
(((	chr21:47704925-47705195(-)$1	1	56	59	8.9999
.((	chr2:169707531-169707793(+)$1	1	0	3	8.9999
((.	chr8:15531166-15531444(+)$1	1	8	11	8.9999
)))	chr15:44951279-44951589(-)$1	1	29	32	8.9999
)))	chr3:63999014-63999369(-)$1	1	103	106	8.9999
..(	chr16:68160347-68160599(+)$1	1	54	57	8.9999
...	chr6:88321704-88322026(+)$1	1	30	33	8.9999
..(	chr2:136673788-136674042(-)$1	1	139	142	8.9999

#PSSM
A : 0.96	a : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_CDS_m3_run1.nuc.txt

#NT
GGA	chr15:45706651-45706901(+)$1	250	19	22	9.0000
GGA	chr20:34143914-34144157(+)$1	243	118	121	9.0000
GGA	chr22:18080930-18081168(-)$1	238	15	18	9.0000
GGA	chr19:5219143-5219438(-)$1	295	7	10	9.0000
GGA	chr5:140070260-140070555(-)$1	295	31	34	9.0000
GGA	chr17:36875641-36875920(+)$1	279	12	15	9.0000
GGA	chr17:8415812-8416066(-)$1	254	192	195	9.0000
GGA	chr11:64535633-64535863(-)$1	230	39	42	9.0000
GGA	chr1:235345418-235345642(-)$1	224	54	57	9.0000
GGA	chr17:20908141-20908426(-)$1	285	39	42	9.0000
gga	chr7:87514181-87514429(+)$1	248	45	48	9.0000
GGA	chr21:46906682-46906941(+)$1	259	93	96	9.0000
GGA	chrX:53585881-53586099(-)$1	218	13	16	9.0000
GGA	chr12:6938868-6939201(+)$1	333	81	84	9.0000
GGA	chr20:48558146-48558393(+)$1	247	44	47	9.0000
GGA	chr16:23695302-23695549(+)$1	247	67	70	9.0000
GGA	chr9:133572866-133573166(+)$1	300	73	76	9.0000
GGA	chr6:33272264-33272579(-)$1	315	23	26	9.0000
GGA	chr1:186331996-186332221(-)$1	225	76	79	9.0000
GGA	chr6:33248115-33248400(-)$1	285	19	22	9.0000
GGA	chr11:64676429-64676704(-)$1	275	29	32	9.0000
GGA	chr21:47981548-47981822(+)$1	274	157	160	9.0000
GGA	chr1:59139142-59139358(-)$1	216	43	46	9.0000
GGA	chr3:48667478-48667691(-)$1	213	42	45	9.0000
GGA	chrX:117679897-117680136(+)$1	239	85	88	9.0000
GGA	chr5:142678167-142678493(-)$1	326	122	125	9.0000
GGA	chr9:139566270-139566509(+)$1	239	9	12	9.0000
GGA	chr1:52830152-52830393(-)$1	241	123	126	9.0000
GGA	chr6:7230490-7230720(+)$1	230	25	28	9.0000
GGA	chr11:76076715-76077030(-)$1	315	29	32	9.0000
GGA	chr16:2141715-2141976(-)$1	261	26	29	9.0000
GGA	chr17:80041192-80041458(-)$1	266	25	28	9.0000
GGA	chr20:39795074-39795314(+)$1	240	121	124	9.0000
gga	chr17:7232360-7232622(-)$1	262	10	13	9.0000
GGA	chr15:91490919-91491167(+)$1	248	23	26	9.0000
gga	chr1:204495411-204495658(+)$1	247	203	206	9.0000
GGA	chr19:3656405-3656661(-)$1	256	41	44	9.0000
GGA	chr6:125597250-125597496(-)$1	246	32	35	9.0000
GGA	chr7:100283587-100283805(-)$1	218	13	16	9.0000
GGA	chr12:120109978-120110219(+)$1	241	84	87	9.0000
GGA	chr1:179853700-179853998(+)$1	298	127	130	9.0000
GGA	chr20:37580081-37580306(+)$1	225	34	37	9.0000
GGA	chr16:28493456-28493774(-)$1	318	4	7	9.0000
GGA	chr21:34059208-34059501(-)$1	293	47	50	9.0000
GGA	chr8:27290850-27291103(+)$1	253	213	216	9.0000
GGA	chr19:12825761-12826027(-)$1	266	3	6	9.0000
GGA	chr3:193336607-193336837(+)$1	230	16	19	9.0000
GGA	chr11:2416499-2416766(+)$1	267	49	52	9.0000
GGA	chr6:34789535-34789814(+)$1	279	112	115	9.0000
GGA	chr3:183860517-183860772(+)$1	255	48	51	9.0000
GGA	chr17:42164700-42164963(-)$1	263	18	21	9.0000
GGA	chr21:46687308-46687558(-)$1	250	6	9	9.0000
GGA	chr7:65439540-65439846(-)$1	306	57	60	9.0000
GGA	chr12:121878560-121878879(-)$1	319	57	60	9.0000
GGA	chr1:53332079-53332416(+)$1	337	31	34	9.0000
GGA	chr7:100421711-100421966(-)$1	255	5	8	9.0000
GGA	chr19:19232332-19232569(-)$1	237	12	15	9.0000
GGA	chr4:16215334-16215635(-)$1	301	58	61	9.0000
GGA	chr11:6629497-6629788(+)$1	291	75	78	9.0000
GGA	chr2:71653533-71653775(+)$1	242	55	58	9.0000
GGA	chr1:222832863-222833098(+)$1	235	25	28	9.0000
GGA	chr5:176673560-176673828(+)$1	268	11	14	9.0000
GGA	chr10:75549604-75549871(+)$1	267	135	138	9.0000
GGA	chr14:53175058-53175340(+)$1	282	57	60	9.0000
GGA	chr17:3845888-3846113(-)$1	225	27	30	9.0000
GGA	chr1:35915409-35915674(-)$1	265	15	18	9.0000
GGA	chr1:227954683-227954969(+)$1	286	20	23	9.0000
GGA	chr15:59406697-59406910(+)$1	213	31	34	9.0000
GGA	chr9:114685010-114685308(+)$1	298	184	187	9.0000
GGA	chr11:61545101-61545353(+)$1	252	59	62	9.0000
GGA	chr16:53321767-53322011(+)$1	244	101	104	9.0000
GGA	chr1:150477264-150477540(+)$1	276	161	164	9.0000
GGA	chr14:96790169-96790456(-)$1	287	46	49	9.0000
GGA	chr1:203682177-203682449(+)$1	272	4	7	9.0000
GGA	chr17:27413446-27413682(-)$1	236	3	6	9.0000
GGA	chr14:24112210-24112523(+)$1	313	19	22	9.0000
GGA	chr16:2106107-2106332(+)$1	225	64	67	9.0000
GGA	chr20:34262394-34262666(-)$1	272	11	14	9.0000
GGA	chr21:46902612-46902827(+)$1	215	114	117	9.0000
GGA	chr19:10472699-10472944(-)$1	245	1	4	9.0000
gga	chr18:12535426-12535716(-)$1	290	12	15	9.0000
GGA	chr2:239354883-239355160(+)$1	277	90	93	9.0000
gga	chr1:161010493-161010804(-)$1	311	4	7	9.0000
GGA	chr11:47753000-47753229(-)$1	229	43	46	9.0000
GGA	chr20:3008253-3008479(+)$1	226	113	116	9.0000
gga	chr17:1552204-1552460(-)$1	256	4	7	9.0000
GGA	chr14:21882960-21883247(-)$1	287	62	65	9.0000
GGA	chr5:43297081-43297383(-)$1	302	25	28	9.0000
GGA	chr2:48681659-48681951(+)$1	292	46	49	9.0000
GGA	chr9:128000456-128000678(-)$1	222	51	54	9.0000
GGA	chr17:43011653-43011893(-)$1	240	112	115	9.0000
GGA	chr19:1254059-1254322(+)$1	263	36	39	9.0000
GGA	chr11:208975-209286(+)$1	311	31	34	9.0000
GGA	chr1:16058253-16058515(+)$1	262	133	136	9.0000
GGA	chr16:1547266-1547498(+)$1	232	2	5	9.0000
gga	chr7:73106816-73107090(+)$1	274	8	11	9.0000
GGA	chr21:30354535-30354812(-)$1	277	25	28	9.0000

#otherMatches

#Struct PSSM
LLL	chr9:4688410-4688761(+)$1	351	15	18	9.0000
FFF	chr15:45706651-45706901(+)$1	250	19	22	9.0000
{GG	chr20:34143914-34144157(+)$1	243	118	121	9.0000
fff	chr22:18080930-18081168(-)$1	238	15	18	9.0000
ggg	chr19:5219143-5219438(-)$1	295	7	10	9.0000
dde	chr5:140070260-140070555(-)$1	295	31	34	9.0000
==[	chr17:36875641-36875920(+)$1	279	12	15	9.0000
e]b	chr17:8415812-8416066(-)$1	254	192	195	9.0000
cc!	chr11:64535633-64535863(-)$1	230	39	42	9.0000
eee	chr1:235345418-235345642(-)$1	224	54	57	9.0000
ggg	chr17:20908141-20908426(-)$1	285	39	42	9.0000
FFF	chr7:87514181-87514429(+)$1	248	45	48	9.0000
ddd	chr21:46906682-46906941(+)$1	259	93	96	9.0000
FFF	chrX:53585881-53586099(-)$1	218	13	16	9.0000
GGG	chr12:6938868-6939201(+)$1	333	81	84	9.0000
bb]	chr20:48558146-48558393(+)$1	247	44	47	9.0000
dd5	chr16:23695302-23695549(+)$1	247	67	70	9.0000
DDD	chr9:133572866-133573166(+)$1	300	73	76	9.0000
BB{	chr6:33272264-33272579(-)$1	315	23	26	9.0000
hhc	chr1:186331996-186332221(-)$1	225	76	79	9.0000
E{B	chr6:33248115-33248400(-)$1	285	19	22	9.0000
LLL	chr11:64676429-64676704(-)$1	275	29	32	9.0000
lll	chr21:47981548-47981822(+)$1	274	157	160	9.0000
qqq	chr1:59139142-59139358(-)$1	216	43	46	9.0000
ccc	chr3:48667478-48667691(-)$1	213	42	45	9.0000
eee	chrX:117679897-117680136(+)$1	239	85	88	9.0000
ffq	chr5:142678167-142678493(-)$1	326	122	125	9.0000
DD{	chr9:139566270-139566509(+)$1	239	9	12	9.0000
ggg	chr1:52830152-52830393(-)$1	241	123	126	9.0000
CC:	chr6:7230490-7230720(+)$1	230	25	28	9.0000
FFF	chr11:76076715-76077030(-)$1	315	29	32	9.0000
fff	chr16:2141715-2141976(-)$1	261	26	29	9.0000
qqq	chr17:80041192-80041458(-)$1	266	25	28	9.0000
eee	chr20:39795074-39795314(+)$1	240	121	124	9.0000
CC{	chr17:7232360-7232622(-)$1	262	10	13	9.0000
HHH	chr15:91490919-91491167(+)$1	248	23	26	9.0000
DDD	chr1:204495411-204495658(+)$1	247	203	206	9.0000
ccc	chr19:3656405-3656661(-)$1	256	41	44	9.0000
ee:	chr6:125597250-125597496(-)$1	246	32	35	9.0000
MMD	chr7:100283587-100283805(-)$1	218	13	16	9.0000
GGG	chr12:120109978-120110219(+)$1	241	84	87	9.0000
ggg	chr1:179853700-179853998(+)$1	298	127	130	9.0000
ddd	chr20:37580081-37580306(+)$1	225	34	37	9.0000
hhh	chr16:28493456-28493774(-)$1	318	4	7	9.0000
ddd	chr21:34059208-34059501(-)$1	293	47	50	9.0000
ccc	chr8:27290850-27291103(+)$1	253	213	216	9.0000
EEE	chr19:12825761-12826027(-)$1	266	3	6	9.0000
iii	chr3:193336607-193336837(+)$1	230	16	19	9.0000
fnn	chr11:2416499-2416766(+)$1	267	49	52	9.0000
iii	chr6:34789535-34789814(+)$1	279	112	115	9.0000
ccc	chr3:183860517-183860772(+)$1	255	48	51	9.0000
b]c	chr17:42164700-42164963(-)$1	263	18	21	9.0000
DDD	chr21:46687308-46687558(-)$1	250	6	9	9.0000
bcc	chr7:65439540-65439846(-)$1	306	57	60	9.0000
eee	chr12:121878560-121878879(-)$1	319	57	60	9.0000
eee	chr1:53332079-53332416(+)$1	337	31	34	9.0000
eee	chr7:100421711-100421966(-)$1	255	5	8	9.0000
eee	chr19:19232332-19232569(-)$1	237	12	15	9.0000
FFF	chr4:16215334-16215635(-)$1	301	58	61	9.0000
BBK	chr11:6629497-6629788(+)$1	291	75	78	9.0000
c!!	chr2:71653533-71653775(+)$1	242	55	58	9.0000
ddd	chr1:222832863-222833098(+)$1	235	25	28	9.0000
ddd	chr5:176673560-176673828(+)$1	268	11	14	9.0000
eee	chr10:75549604-75549871(+)$1	267	135	138	9.0000
ccc	chr14:53175058-53175340(+)$1	282	57	60	9.0000
!ee	chr17:3845888-3846113(-)$1	225	27	30	9.0000
ooo	chr1:35915409-35915674(-)$1	265	15	18	9.0000
fff	chr1:227954683-227954969(+)$1	286	20	23	9.0000
nnn	chr15:59406697-59406910(+)$1	213	31	34	9.0000
HHH	chr9:114685010-114685308(+)$1	298	184	187	9.0000
fff	chr11:61545101-61545353(+)$1	252	59	62	9.0000
:==	chr16:53321767-53322011(+)$1	244	101	104	9.0000
hhh	chr1:150477264-150477540(+)$1	276	161	164	9.0000
ddd	chr14:96790169-96790456(-)$1	287	46	49	9.0000
eee	chr1:203682177-203682449(+)$1	272	4	7	9.0000
DDL	chr17:27413446-27413682(-)$1	236	3	6	9.0000
qgg	chr14:24112210-24112523(+)$1	313	19	22	9.0000
ddd	chr16:2106107-2106332(+)$1	225	64	67	9.0000
ddd	chr20:34262394-34262666(-)$1	272	11	14	9.0000
ddd	chr21:46902612-46902827(+)$1	215	114	117	9.0000
FFF	chr19:10472699-10472944(-)$1	245	1	4	9.0000
bb[	chr18:12535426-12535716(-)$1	290	12	15	9.0000
bb[	chr2:239354883-239355160(+)$1	277	90	93	9.0000
JJJ	chr1:161010493-161010804(-)$1	311	4	7	9.0000
eee	chr11:47753000-47753229(-)$1	229	43	46	9.0000
ddd	chr20:3008253-3008479(+)$1	226	113	116	9.0000
DDD	chr17:1552204-1552460(-)$1	256	4	7	9.0000
fff	chr14:21882960-21883247(-)$1	287	62	65	9.0000
fff	chr5:43297081-43297383(-)$1	302	25	28	9.0000
hh:	chr2:48681659-48681951(+)$1	292	46	49	9.0000
d##	chr9:128000456-128000678(-)$1	222	51	54	9.0000
bb3	chr17:43011653-43011893(-)$1	240	112	115	9.0000
iii	chr19:1254059-1254322(+)$1	263	36	39	9.0000
JJJ	chr11:208975-209286(+)$1	311	31	34	9.0000
ggg	chr1:16058253-16058515(+)$1	262	133	136	9.0000
cc[	chr16:1547266-1547498(+)$1	232	2	5	9.0000
ddd	chr7:73106816-73107090(+)$1	274	8	11	9.0000
eee	chr21:30354535-30354812(-)$1	277	25	28	9.0000

#DB
...	chr9:4688410-4688761(+)$1	1	15	18	9.0000
(((	chr15:45706651-45706901(+)$1	1	19	22	9.0000
.((	chr20:34143914-34144157(+)$1	1	118	121	9.0000
(((	chr22:18080930-18081168(-)$1	1	15	18	9.0000
(((	chr19:5219143-5219438(-)$1	1	7	10	9.0000
))(	chr5:140070260-140070555(-)$1	1	31	34	9.0000
((.	chr17:36875641-36875920(+)$1	1	12	15	9.0000
).)	chr17:8415812-8416066(-)$1	1	192	195	9.0000
((.	chr11:64535633-64535863(-)$1	1	39	42	9.0000
(((	chr1:235345418-235345642(-)$1	1	54	57	9.0000
(((	chr17:20908141-20908426(-)$1	1	39	42	9.0000
(((	chr7:87514181-87514429(+)$1	1	45	48	9.0000
(((	chr21:46906682-46906941(+)$1	1	93	96	9.0000
(((	chrX:53585881-53586099(-)$1	1	13	16	9.0000
(((	chr12:6938868-6939201(+)$1	1	81	84	9.0000
)).	chr20:48558146-48558393(+)$1	1	44	47	9.0000
)).	chr16:23695302-23695549(+)$1	1	67	70	9.0000
(((	chr9:133572866-133573166(+)$1	1	73	76	9.0000
((.	chr6:33272264-33272579(-)$1	1	23	26	9.0000
(((	chr1:186331996-186332221(-)$1	1	76	79	9.0000
(.(	chr6:33248115-33248400(-)$1	1	19	22	9.0000
...	chr11:64676429-64676704(-)$1	1	29	32	9.0000
...	chr21:47981548-47981822(+)$1	1	157	160	9.0000
...	chr1:59139142-59139358(-)$1	1	43	46	9.0000
(((	chr3:48667478-48667691(-)$1	1	42	45	9.0000
)))	chrX:117679897-117680136(+)$1	1	85	88	9.0000
((.	chr5:142678167-142678493(-)$1	1	122	125	9.0000
((.	chr9:139566270-139566509(+)$1	1	9	12	9.0000
)))	chr1:52830152-52830393(-)$1	1	123	126	9.0000
((.	chr6:7230490-7230720(+)$1	1	25	28	9.0000
(((	chr11:76076715-76077030(-)$1	1	29	32	9.0000
(((	chr16:2141715-2141976(-)$1	1	26	29	9.0000
...	chr17:80041192-80041458(-)$1	1	25	28	9.0000
)))	chr20:39795074-39795314(+)$1	1	121	124	9.0000
((.	chr17:7232360-7232622(-)$1	1	10	13	9.0000
(((	chr15:91490919-91491167(+)$1	1	23	26	9.0000
)))	chr1:204495411-204495658(+)$1	1	203	206	9.0000
(((	chr19:3656405-3656661(-)$1	1	41	44	9.0000
)).	chr6:125597250-125597496(-)$1	1	32	35	9.0000
..(	chr7:100283587-100283805(-)$1	1	13	16	9.0000
(((	chr12:120109978-120110219(+)$1	1	84	87	9.0000
(((	chr1:179853700-179853998(+)$1	1	127	130	9.0000
)))	chr20:37580081-37580306(+)$1	1	34	37	9.0000
(((	chr16:28493456-28493774(-)$1	1	4	7	9.0000
(((	chr21:34059208-34059501(-)$1	1	47	50	9.0000
)))	chr8:27290850-27291103(+)$1	1	213	216	9.0000
(((	chr19:12825761-12826027(-)$1	1	3	6	9.0000
(((	chr3:193336607-193336837(+)$1	1	16	19	9.0000
(..	chr11:2416499-2416766(+)$1	1	49	52	9.0000
(((	chr6:34789535-34789814(+)$1	1	112	115	9.0000
)))	chr3:183860517-183860772(+)$1	1	48	51	9.0000
).)	chr17:42164700-42164963(-)$1	1	18	21	9.0000
(((	chr21:46687308-46687558(-)$1	1	6	9	9.0000
(((	chr7:65439540-65439846(-)$1	1	57	60	9.0000
(((	chr12:121878560-121878879(-)$1	1	57	60	9.0000
)))	chr1:53332079-53332416(+)$1	1	31	34	9.0000
(((	chr7:100421711-100421966(-)$1	1	5	8	9.0000
(((	chr19:19232332-19232569(-)$1	1	12	15	9.0000
(((	chr4:16215334-16215635(-)$1	1	58	61	9.0000
((.	chr11:6629497-6629788(+)$1	1	75	78	9.0000
(..	chr2:71653533-71653775(+)$1	1	55	58	9.0000
(((	chr1:222832863-222833098(+)$1	1	25	28	9.0000
)))	chr5:176673560-176673828(+)$1	1	11	14	9.0000
)))	chr10:75549604-75549871(+)$1	1	135	138	9.0000
(((	chr14:53175058-53175340(+)$1	1	57	60	9.0000
.((	chr17:3845888-3846113(-)$1	1	27	30	9.0000
...	chr1:35915409-35915674(-)$1	1	15	18	9.0000
(((	chr1:227954683-227954969(+)$1	1	20	23	9.0000
...	chr15:59406697-59406910(+)$1	1	31	34	9.0000
)))	chr9:114685010-114685308(+)$1	1	184	187	9.0000
(((	chr11:61545101-61545353(+)$1	1	59	62	9.0000
.((	chr16:53321767-53322011(+)$1	1	101	104	9.0000
)))	chr1:150477264-150477540(+)$1	1	161	164	9.0000
)))	chr14:96790169-96790456(-)$1	1	46	49	9.0000
(((	chr1:203682177-203682449(+)$1	1	4	7	9.0000
((.	chr17:27413446-27413682(-)$1	1	3	6	9.0000
.))	chr14:24112210-24112523(+)$1	1	19	22	9.0000
(((	chr16:2106107-2106332(+)$1	1	64	67	9.0000
(((	chr20:34262394-34262666(-)$1	1	11	14	9.0000
)))	chr21:46902612-46902827(+)$1	1	114	117	9.0000
(((	chr19:10472699-10472944(-)$1	1	1	4	9.0000
((.	chr18:12535426-12535716(-)$1	1	12	15	9.0000
((.	chr2:239354883-239355160(+)$1	1	90	93	9.0000
(((	chr1:161010493-161010804(-)$1	1	4	7	9.0000
)))	chr11:47753000-47753229(-)$1	1	43	46	9.0000
)))	chr20:3008253-3008479(+)$1	1	113	116	9.0000
(((	chr17:1552204-1552460(-)$1	1	4	7	9.0000
(((	chr14:21882960-21883247(-)$1	1	62	65	9.0000
(((	chr5:43297081-43297383(-)$1	1	25	28	9.0000
)).	chr2:48681659-48681951(+)$1	1	46	49	9.0000
(..	chr9:128000456-128000678(-)$1	1	51	54	9.0000
)).	chr17:43011653-43011893(-)$1	1	112	115	9.0000
(((	chr19:1254059-1254322(+)$1	1	36	39	9.0000
(((	chr11:208975-209286(+)$1	1	31	34	9.0000
)))	chr1:16058253-16058515(+)$1	1	133	136	9.0000
((.	chr16:1547266-1547498(+)$1	1	2	5	9.0000
(((	chr7:73106816-73107090(+)$1	1	8	11	9.0000
(((	chr21:30354535-30354812(-)$1	1	25	28	9.0000

#PSSM
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	
A : 0.92	a : 0.07	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_transcript_m1_run1.nuc.txt

#NT
UUUAAA	chr17:71223117-71223401(-)$1	284	189	195	18.0000
UUUAAA	chr2:61561087-61561353(-)$1	266	57	63	18.0000
uuuaaa	chr5:39027925-39028160(-)$1	235	66	72	18.0000
uuUAAA	chr2:55816455-55816725(-)$1	270	161	167	18.0000
UUUAAA	chr3:33655568-33655846(-)$1	278	77	83	18.0000
uuuaaa	chr5:133511145-133511375(-)$1	230	179	185	18.0000
uuuaaa	chr7:156630111-156630423(-)$1	312	137	143	18.0000
UUUAAA	chr4:146080305-146080528(-)$1	223	171	177	18.0000
uuuaaa	chr11:10876606-10876867(-)$1	261	162	168	18.0000
UUUAAA	chr7:119421541-119421791(-)$1	250	39	45	18.0000
uuuaaa	chr8:101958926-101959206(-)$1	280	12	18	18.0000
UUUAAA	chr21:27112926-27113197(+)$1	271	61	67	18.0000
UUUAAA	chr6:170162514-170162826(+)$1	312	185	191	18.0000
uuuaaa	chr18:9570879-9571147(-)$1	268	96	102	18.0000
UUUAAA	chr1:15970160-15970481(+)$1	321	94	100	18.0000
UUUAAA	chr10:21959737-21960000(+)$1	263	39	45	18.0000
UUUAAA	chr15:59975395-59975735(-)$1	340	291	297	18.0000
UUUAAA	chrX:24742571-24742843(+)$1	272	183	189	18.0000
uuuaaa	chr10:70952010-70952266(+)$1	256	199	205	18.0000
UUUAAA	chr6:157271564-157271806(+)$1	242	3	9	18.0000
uuuaaa	chr1:113632688-113632999(+)$1	311	83	89	18.0000
uuuaaa	chr2:176808126-176808386(-)$1	260	42	48	18.0000
uuuaaa	chr2:39550903-39551159(-)$1	256	87	93	18.0000
uuuaaa	chr14:29403762-29404025(+)$1	263	40	46	18.0000
uuuaaa	chr6:71225589-71225904(+)$1	315	55	61	18.0000
UUUAAA	chr7:155532667-155532981(+)$1	314	203	209	18.0000
UUUAAA	chr6:13646018-13646257(-)$1	239	138	144	18.0000
UUUAAA	chr1:29485928-29486178(-)$1	250	22	28	18.0000
uuuaaa	chr7:111099457-111099679(-)$1	222	170	176	18.0000
UUUAAA	chr12:62708122-62708350(+)$1	228	217	223	18.0000
uuuaaa	chr8:30920591-30920890(+)$1	299	127	133	18.0000
uuuaaa	chr7:119453222-119453451(-)$1	229	116	122	18.0000
UUUAAA	chr3:31670847-31671134(+)$1	287	99	105	18.0000
UUUAAA	chr6:24713525-24713789(-)$1	264	73	79	18.0000
UUUAAA	chr4:48596034-48596286(-)$1	252	24	30	18.0000
uuuaaa	chr1:87332309-87332625(-)$1	316	308	314	18.0000
uuuaaa	chr21:23605956-23606184(+)$1	228	18	24	18.0000
UUUAAA	chr2:170865546-170865887(+)$1	341	303	309	18.0000
uuuaaa	chr2:64185092-64185389(-)$1	297	79	85	18.0000
UUUAAA	chr1:227462724-227462975(-)$1	251	92	98	18.0000
UUUAAA	chr2:230699573-230699965(-)$1	392	359	365	18.0000
uuuaaa	chrX:73201479-73201730(+)$1	251	71	77	18.0000
uuuaaa	chr6:86255036-86255265(-)$1	229	162	168	18.0000
UUUAAA	chr5:104583918-104584209(-)$1	291	118	124	18.0000
UUUAAA	chr17:38556244-38556490(-)$1	246	89	95	18.0000
UUUAAA	chr6:99851654-99851924(-)$1	270	20	26	18.0000
UUUAAA	chr21:40576867-40577123(-)$1	256	18	24	18.0000
uuuaaa	chr6:170093799-170094094(-)$1	295	267	273	18.0000
uuuaaa	chr6:83726819-83727050(-)$1	231	105	111	18.0000

#otherMatches

#Struct PSSM
ffff::	chr22:19417242-19417547(-)$1	305	184	190	18.0000
ffffff	chr17:71223117-71223401(-)$1	284	189	195	18.0000
ssssss	chr2:61561087-61561353(-)$1	266	57	63	18.0000
g!!eee	chr5:39027925-39028160(-)$1	235	66	72	18.0000
qqqqhh	chr2:55816455-55816725(-)$1	270	161	167	18.0000
WWWWWW	chr3:33655568-33655846(-)$1	278	77	83	18.0000
oooood	chr5:133511145-133511375(-)$1	230	179	185	18.0000
"""ddd	chr7:156630111-156630423(-)$1	312	137	143	18.0000
8888ee	chr4:146080305-146080528(-)$1	223	171	177	18.0000
+++++h	chr11:10876606-10876867(-)$1	261	162	168	18.0000
^^^^^^	chr7:119421541-119421791(-)$1	250	39	45	18.0000
BKKGGG	chr8:101958926-101959206(-)$1	280	12	18	18.0000
ddllld	chr21:27112926-27113197(+)$1	271	61	67	18.0000
::::::	chr6:170162514-170162826(+)$1	312	185	191	18.0000
fooooo	chr18:9570879-9571147(-)$1	268	96	102	18.0000
dd[hhh	chr1:15970160-15970481(+)$1	321	94	100	18.0000
dqqqqq	chr10:21959737-21960000(+)$1	263	39	45	18.0000
ZZZIII	chr15:59975395-59975735(-)$1	340	291	297	18.0000
ffffff	chrX:24742571-24742843(+)$1	272	183	189	18.0000
""bb[d	chr10:70952010-70952266(+)$1	256	199	205	18.0000
::::::	chr6:157271564-157271806(+)$1	242	3	9	18.0000
ffff44	chr1:113632688-113632999(+)$1	311	83	89	18.0000
qqqqqq	chr2:176808126-176808386(-)$1	260	42	48	18.0000
2ccc]h	chr2:39550903-39551159(-)$1	256	87	93	18.0000
DKKDDD	chr14:29403762-29404025(+)$1	263	40	46	18.0000
GGG::f	chr6:71225589-71225904(+)$1	315	55	61	18.0000
^^^^^^	chr7:155532667-155532981(+)$1	314	203	209	18.0000
mmmmdd	chr6:13646018-13646257(-)$1	239	138	144	18.0000
ggggg"	chr1:29485928-29486178(-)$1	250	22	28	18.0000
>>>>>>	chr7:111099457-111099679(-)$1	222	170	176	18.0000
::::::	chr12:62708122-62708350(+)$1	228	217	223	18.0000
c$$$$$	chr8:30920591-30920890(+)$1	299	127	133	18.0000
f[eeee	chr7:119453222-119453451(-)$1	229	116	122	18.0000
DDKKCC	chr3:31670847-31671134(+)$1	287	99	105	18.0000
NIIIII	chr6:24713525-24713789(-)$1	264	73	79	18.0000
DDDD{E	chr4:48596034-48596286(-)$1	252	24	30	18.0000
::::::	chr1:87332309-87332625(-)$1	316	308	314	18.0000
ooooee	chr21:23605956-23606184(+)$1	228	18	24	18.0000
ggg999	chr2:170865546-170865887(+)$1	341	303	309	18.0000
::::::	chr2:64185092-64185389(-)$1	297	79	85	18.0000
ddd"""	chr1:227462724-227462975(-)$1	251	92	98	18.0000
iii:::	chr2:230699573-230699965(-)$1	392	359	365	18.0000
::::::	chrX:73201479-73201730(+)$1	251	71	77	18.0000
::::::	chr6:86255036-86255265(-)$1	229	162	168	18.0000
EEEEEg	chr5:104583918-104584209(-)$1	291	118	124	18.0000
d66666	chr17:38556244-38556490(-)$1	246	89	95	18.0000
ggg:::	chr6:99851654-99851924(-)$1	270	20	26	18.0000
fffffm	chr21:40576867-40577123(-)$1	256	18	24	18.0000
:::::e	chr6:170093799-170094094(-)$1	295	267	273	18.0000
:::::c	chr6:83726819-83727050(-)$1	231	105	111	18.0000

#DB
))))..	chr22:19417242-19417547(-)$1	1	184	190	18.0000
((((((	chr17:71223117-71223401(-)$1	1	189	195	18.0000
......	chr2:61561087-61561353(-)$1	1	57	63	18.0000
(..(((	chr5:39027925-39028160(-)$1	1	66	72	18.0000
....))	chr2:55816455-55816725(-)$1	1	161	167	18.0000
......	chr3:33655568-33655846(-)$1	1	77	83	18.0000
.....)	chr5:133511145-133511375(-)$1	1	179	185	18.0000
...(((	chr7:156630111-156630423(-)$1	1	137	143	18.0000
....))	chr4:146080305-146080528(-)$1	1	171	177	18.0000
.....(	chr11:10876606-10876867(-)$1	1	162	168	18.0000
......	chr7:119421541-119421791(-)$1	1	39	45	18.0000
(..(((	chr8:101958926-101959206(-)$1	1	12	18	18.0000
((...)	chr21:27112926-27113197(+)$1	1	61	67	18.0000
......	chr6:170162514-170162826(+)$1	1	185	191	18.0000
(.....	chr18:9570879-9571147(-)$1	1	96	102	18.0000
((.(((	chr1:15970160-15970481(+)$1	1	94	100	18.0000
(.....	chr10:21959737-21960000(+)$1	1	39	45	18.0000
...)))	chr15:59975395-59975735(-)$1	1	291	297	18.0000
((((((	chrX:24742571-24742843(+)$1	1	183	189	18.0000
..((.(	chr10:70952010-70952266(+)$1	1	199	205	18.0000
......	chr6:157271564-157271806(+)$1	1	3	9	18.0000
))))..	chr1:113632688-113632999(+)$1	1	83	89	18.0000
......	chr2:176808126-176808386(-)$1	1	42	48	18.0000
.))).)	chr2:39550903-39551159(-)$1	1	87	93	18.0000
(..(((	chr14:29403762-29404025(+)$1	1	40	46	18.0000
(((..(	chr6:71225589-71225904(+)$1	1	55	61	18.0000
......	chr7:155532667-155532981(+)$1	1	203	209	18.0000
....))	chr6:13646018-13646257(-)$1	1	138	144	18.0000
(((((.	chr1:29485928-29486178(-)$1	1	22	28	18.0000
......	chr7:111099457-111099679(-)$1	1	170	176	18.0000
......	chr12:62708122-62708350(+)$1	1	217	223	18.0000
(.....	chr8:30920591-30920890(+)$1	1	127	133	18.0000
(.((((	chr7:119453222-119453451(-)$1	1	116	122	18.0000
((..((	chr3:31670847-31671134(+)$1	1	99	105	18.0000
.(((((	chr6:24713525-24713789(-)$1	1	73	79	18.0000
((((.(	chr4:48596034-48596286(-)$1	1	24	30	18.0000
......	chr1:87332309-87332625(-)$1	1	308	314	18.0000
....))	chr21:23605956-23606184(+)$1	1	18	24	18.0000
)))...	chr2:170865546-170865887(+)$1	1	303	309	18.0000
......	chr2:64185092-64185389(-)$1	1	79	85	18.0000
(((...	chr1:227462724-227462975(-)$1	1	92	98	18.0000
)))...	chr2:230699573-230699965(-)$1	1	359	365	18.0000
......	chrX:73201479-73201730(+)$1	1	71	77	18.0000
......	chr6:86255036-86255265(-)$1	1	162	168	18.0000
((((((	chr5:104583918-104584209(-)$1	1	118	124	18.0000
).....	chr17:38556244-38556490(-)$1	1	89	95	18.0000
)))...	chr6:99851654-99851924(-)$1	1	20	26	18.0000
(((((.	chr21:40576867-40577123(-)$1	1	18	24	18.0000
.....(	chr6:170093799-170094094(-)$1	1	267	273	18.0000
.....(	chr6:83726819-83727050(-)$1	1	105	111	18.0000

#PSSM
U : 0.54	u : 0.46	
U : 0.54	u : 0.46	
U : 0.56	u : 0.44	
A : 0.56	a : 0.44	
A : 0.56	a : 0.44	
A : 0.56	a : 0.44	

#score	900.0000000000001
#seq	50
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_UTR_m2_run2.nuc.txt

#NT
CUGUCCC	chr2:219140646-219140899(-)$1	253	78	85	13.0967
CUGGCCU	chr16:2489687-2489920(+)$1	233	171	178	13.5806
CUGCCCC	chr7:150774962-150775213(-)$1	251	76	83	13.7419
CUGGCCC	chr6:42018973-42019270(+)$1	297	166	173	16.7258
CUGGCCU	chr1:32628795-32629060(+)$1	265	7	14	13.5806
CUGGGCC	chr16:67198891-67199119(+)$1	228	35	42	12.6935
CUGCCCC	chr6:30584607-30584850(-)$1	243	214	221	13.7419
CUAGCCC	chr2:183995030-183995288(+)$1	258	199	206	12.0483
CCGGCCC	chr19:10464332-10464573(-)$1	241	201	208	12.2903
CUGCCCC	chr17:40859876-40860115(-)$1	239	81	88	13.7419
CUGGCCA	chr1:1337491-1337747(-)$1	256	147	154	13.5806
CUGGCCA	chr19:50165059-50165327(-)$1	268	146	153	13.5806
cuugccc	chr1:24106210-24106484(+)$1	274	70	77	12.1290
CUGGCCC	chr17:34859866-34860136(-)$1	270	230	237	16.7258
CUGGGCC	chr17:1942926-1943218(+)$1	292	198	205	12.6935
CUGACCC	chr14:74192625-74192925(-)$1	300	87	94	13.1774
CUGCCCC	chr14:35871936-35872174(-)$1	238	209	216	13.7419
CUGGCCU	chr17:77082450-77082723(+)$1	273	6	13	13.5806
CUGCCCC	chr19:36501778-36502069(-)$1	291	160	167	13.7419
CUGGCCA	chr19:7992508-7992753(-)$1	245	101	108	13.5806
CUGCCCC	chr22:22899478-22899740(-)$1	262	218	225	13.7419
CUGGCCU	chr7:150066561-150066837(+)$1	276	204	211	13.5806
CUGGUCC	chr6:31728863-31729083(+)$1	220	137	144	12.6129
CUGGCCU	chr10:94451876-94452162(+)$1	286	153	160	13.5806
CUGGCCC	chr15:75653808-75654045(-)$1	237	149	156	16.7258
CUGGCCG	chr3:195974212-195974494(-)$1	282	242	249	13.1774
ccggccc	chr5:180288099-180288319(-)$1	220	135	142	12.2903
CUGGCCC	chr17:20914473-20914733(-)$1	260	180	187	16.7258
ccggccC	chr17:73227314-73227570(+)$1	256	6	13	12.2903
CUGGCCC	chr15:42129412-42129693(+)$1	281	44	51	16.7258
cuggccu	chr1:156851124-156851375(+)$1	251	61	68	13.5806
CUGGCCG	chr19:47227988-47228228(-)$1	240	208	215	13.1774
CUGGCCU	chr22:29932518-29932813(-)$1	295	211	218	13.5806
CUGUCCC	chr1:156280357-156280585(-)$1	228	8	15	13.0967
CUGGCUC	chr19:3464838-3465097(+)$1	259	208	215	12.4516
CUGGCAC	chr12:98994845-98995147(+)$1	302	69	76	12.4516
CUGCCCC	chr5:90667110-90667397(-)$1	287	165	172	13.7419
UUGGCCC	chr15:89444847-89445139(-)$1	292	17	24	11.8870
CUUGCCC	chr1:227169649-227169887(+)$1	238	63	70	12.1290
CUGGCAC	chr19:56614410-56614690(-)$1	280	47	54	12.4516
CUGGGCC	chr20:34501107-34501366(+)$1	259	240	247	12.6935
CUGGCCC	chrX:153608999-153609231(+)$1	232	211	218	16.7258
CUGGCAC	chrX:153996556-153996794(+)$1	238	44	51	12.4516
CUGGCCC	chr17:17718507-17718774(-)$1	267	139	146	16.7258
CUGCCCC	chr11:61188590-61188851(-)$1	261	219	226	13.7419
CUGGCCA	chr1:46124671-46124920(-)$1	249	109	116	13.5806
CUGACCC	chr22:42290717-42290961(+)$1	244	106	113	13.1774
CUGCCCC	chr12:56559159-56559401(-)$1	242	53	60	13.7419
CUGGCCC	chrX:153583273-153583507(-)$1	234	31	38	16.7258
CUGGCCA	chr11:61732274-61732510(-)$1	236	25	32	13.5806
CUGGCCA	chr6:30879609-30879831(+)$1	222	211	218	13.5806
CUGGACC	chr12:48499074-48499354(-)$1	280	97	104	12.4516
CUGGGCC	chr2:219433508-219433831(+)$1	323	201	208	12.6935
CUGGUCC	chr8:145650335-145650596(-)$1	261	59	66	12.6129
CUGGCCA	chr12:56677436-56677695(-)$1	259	7	14	13.5806
CUGGCUC	chr8:30034536-30034816(+)$1	280	227	234	12.4516
CGGGCCC	chr3:47890565-47890843(+)$1	278	10	17	12.1290
CUGGCUC	chr12:6879264-6879485(+)$1	221	46	53	12.4516
CUGGUCC	chr8:145650133-145650380(-)$1	247	60	67	12.6129
CUGCCCC	chr16:27497232-27497479(-)$1	247	191	198	13.7419
CUGACCC	chr16:67228196-67228459(+)$1	263	78	85	13.1774

#otherMatches

#Struct PSSM
dddddde	chr19:16629254-16629497(-)$1	243	188	195	16.7258
KJJJJJJ	chr2:219140646-219140899(-)$1	253	78	85	13.0967
rrrrrrr	chr16:2489687-2489920(+)$1	233	171	178	13.5806
hhh5555	chr7:150774962-150775213(-)$1	251	76	83	13.7419
hhh"""c	chr6:42018973-42019270(+)$1	297	166	173	16.7258
GGGGG::	chr1:32628795-32629060(+)$1	265	7	14	13.5806
ccceeee	chr16:67198891-67199119(+)$1	228	35	42	12.6935
cccccc]	chr6:30584607-30584850(-)$1	243	214	221	13.7419
iiiii33	chr2:183995030-183995288(+)$1	258	199	206	12.0483
GGGGGGC	chr19:10464332-10464573(-)$1	241	201	208	12.2903
mmbb:::	chr17:40859876-40860115(-)$1	239	81	88	13.7419
ggggggg	chr1:1337491-1337747(-)$1	256	147	154	13.5806
=======	chr19:50165059-50165327(-)$1	268	146	153	13.5806
GG{CCCM	chr1:24106210-24106484(+)$1	274	70	77	12.1290
mmdddd2	chr17:34859866-34860136(-)$1	270	230	237	16.7258
}DDDDYY	chr17:1942926-1943218(+)$1	292	198	205	12.6935
gggg444	chr14:74192625-74192925(-)$1	300	87	94	13.1774
22bb]ee	chr14:35871936-35872174(-)$1	238	209	216	13.7419
mmdddd:	chr17:77082450-77082723(+)$1	273	6	13	13.5806
ccc[bbm	chr19:36501778-36502069(-)$1	291	160	167	13.7419
###cccl	chr19:7992508-7992753(-)$1	245	101	108	13.5806
GGGGG}E	chr22:22899478-22899740(-)$1	262	218	225	13.7419
ddggggg	chr7:150066561-150066837(+)$1	276	204	211	13.5806
eeeeiii	chr6:31728863-31729083(+)$1	220	137	144	12.6129
mmdddd]	chr10:94451876-94452162(+)$1	286	153	160	13.5806
ggggggg	chr15:75653808-75654045(-)$1	237	149	156	16.7258
]a]dddd	chr3:195974212-195974494(-)$1	282	242	249	13.1774
!!eeeee	chr5:180288099-180288319(-)$1	220	135	142	12.2903
dd[bbee	chr17:20914473-20914733(-)$1	260	180	187	16.7258
::CCCcc	chr17:73227314-73227570(+)$1	256	6	13	12.2903
eeeeebb	chr15:42129412-42129693(+)$1	281	44	51	16.7258
!!dddd[	chr1:156851124-156851375(+)$1	251	61	68	13.5806
dddd22c	chr19:47227988-47228228(-)$1	240	208	215	13.1774
mmeeeee	chr22:29932518-29932813(-)$1	295	211	218	13.5806
DDDD::H	chr1:156280357-156280585(-)$1	228	8	15	13.0967
GGGGGGZ	chr19:3464838-3465097(+)$1	259	208	215	12.4516
ddhhhhh	chr12:98994845-98995147(+)$1	302	69	76	12.4516
dddd:DD	chr5:90667110-90667397(-)$1	287	165	172	13.7419
GGGGeee	chr15:89444847-89445139(-)$1	292	17	24	11.8870
dddd:AG	chr1:227169649-227169887(+)$1	238	63	70	12.1290
KKCCC{C	chr19:56614410-56614690(-)$1	280	47	54	12.4516
mmmdddd	chr20:34501107-34501366(+)$1	259	240	247	12.6935
GGGGGG?	chrX:153608999-153609231(+)$1	232	211	218	16.7258
333dddd	chrX:153996556-153996794(+)$1	238	44	51	12.4516
mmbb]bb	chr17:17718507-17718774(-)$1	267	139	146	16.7258
HHHHHHH	chr11:61188590-61188851(-)$1	261	219	226	13.7419
DDD}BB:	chr1:46124671-46124920(-)$1	249	109	116	13.5806
f''''''	chr22:42290717-42290961(+)$1	244	106	113	13.1774
dddd:::	chr12:56559159-56559401(-)$1	242	53	60	13.7419
ccbbddd	chrX:153583273-153583507(-)$1	234	31	38	16.7258
D:::bb[	chr11:61732274-61732510(-)$1	236	25	32	13.5806
BZZZBB:	chr6:30879609-30879831(+)$1	222	211	218	13.5806
b[ccc##	chr12:48499074-48499354(-)$1	280	97	104	12.4516
DDDDDDD	chr2:219433508-219433831(+)$1	323	201	208	12.6935
ggggggg	chr8:145650335-145650596(-)$1	261	59	66	12.6129
::cccmm	chr12:56677436-56677695(-)$1	259	7	14	13.5806
::bb!!b	chr8:30034536-30034816(+)$1	280	227	234	12.4516
DDDDDDD	chr3:47890565-47890843(+)$1	278	10	17	12.1290
ee!!bbd	chr12:6879264-6879485(+)$1	221	46	53	12.4516
CCEEEEE	chr8:145650133-145650380(-)$1	247	60	67	12.6129
::bb[bb	chr16:27497232-27497479(-)$1	247	191	198	13.7419
ooooeee	chr16:67228196-67228459(+)$1	263	78	85	13.1774

#DB
)))))))	chr19:16629254-16629497(-)$1	1	188	195	16.7258
.((((((	chr2:219140646-219140899(-)$1	1	78	85	13.0967
.......	chr16:2489687-2489920(+)$1	1	171	178	13.5806
)))....	chr7:150774962-150775213(-)$1	1	76	83	13.7419
(((...(	chr6:42018973-42019270(+)$1	1	166	173	16.7258
(((((..	chr1:32628795-32629060(+)$1	1	7	14	13.5806
(((((((	chr16:67198891-67199119(+)$1	1	35	42	12.6935
)))))).	chr6:30584607-30584850(-)$1	1	214	221	13.7419
)))))..	chr2:183995030-183995288(+)$1	1	199	206	12.0483
)))))))	chr19:10464332-10464573(-)$1	1	201	208	12.2903
..))...	chr17:40859876-40860115(-)$1	1	81	88	13.7419
(((((((	chr1:1337491-1337747(-)$1	1	147	154	13.5806
(((((((	chr19:50165059-50165327(-)$1	1	146	153	13.5806
((.(((.	chr1:24106210-24106484(+)$1	1	70	77	12.1290
..)))).	chr17:34859866-34860136(-)$1	1	230	237	16.7258
.))))..	chr17:1942926-1943218(+)$1	1	198	205	12.6935
))))...	chr14:74192625-74192925(-)$1	1	87	94	13.1774
..)).))	chr14:35871936-35872174(-)$1	1	209	216	13.7419
..)))).	chr17:77082450-77082723(+)$1	1	6	13	13.5806
(((.((.	chr19:36501778-36502069(-)$1	1	160	167	13.7419
...(((.	chr19:7992508-7992753(-)$1	1	101	108	13.5806
))))).)	chr22:22899478-22899740(-)$1	1	218	225	13.7419
(((((((	chr7:150066561-150066837(+)$1	1	204	211	13.5806
))))(((	chr6:31728863-31729083(+)$1	1	137	144	12.6129
..)))).	chr10:94451876-94452162(+)$1	1	153	160	13.5806
)))))))	chr15:75653808-75654045(-)$1	1	149	156	16.7258
.).))))	chr3:195974212-195974494(-)$1	1	242	249	13.1774
..(((((	chr5:180288099-180288319(-)$1	1	135	142	12.2903
((.((((	chr17:20914473-20914733(-)$1	1	180	187	16.7258
..(((((	chr17:73227314-73227570(+)$1	1	6	13	12.2903
(((((((	chr15:42129412-42129693(+)$1	1	44	51	16.7258
..((((.	chr1:156851124-156851375(+)$1	1	61	68	13.5806
))))..)	chr19:47227988-47228228(-)$1	1	208	215	13.1774
..)))))	chr22:29932518-29932813(-)$1	1	211	218	13.5806
((((..(	chr1:156280357-156280585(-)$1	1	8	15	13.0967
)))))).	chr19:3464838-3465097(+)$1	1	208	215	12.4516
))(((((	chr12:98994845-98995147(+)$1	1	69	76	12.4516
)))).((	chr5:90667110-90667397(-)$1	1	165	172	13.7419
(((((((	chr15:89444847-89445139(-)$1	1	17	24	11.8870
)))).((	chr1:227169649-227169887(+)$1	1	63	70	12.1290
..(((.(	chr19:56614410-56614690(-)$1	1	47	54	12.4516
...))))	chr20:34501107-34501366(+)$1	1	240	247	12.6935
)))))).	chrX:153608999-153609231(+)$1	1	211	218	16.7258
...))))	chrX:153996556-153996794(+)$1	1	44	51	12.4516
..)).))	chr17:17718507-17718774(-)$1	1	139	146	16.7258
)))))))	chr11:61188590-61188851(-)$1	1	219	226	13.7419
))).)).	chr1:46124671-46124920(-)$1	1	109	116	13.5806
(......	chr22:42290717-42290961(+)$1	1	106	113	13.1774
))))...	chr12:56559159-56559401(-)$1	1	53	60	13.7419
))(((((	chrX:153583273-153583507(-)$1	1	31	38	16.7258
(...((.	chr11:61732274-61732510(-)$1	1	25	32	13.5806
)...)).	chr6:30879609-30879831(+)$1	1	211	218	13.5806
(.(((..	chr12:48499074-48499354(-)$1	1	97	104	12.4516
)))))))	chr2:219433508-219433831(+)$1	1	201	208	12.6935
(((((((	chr8:145650335-145650596(-)$1	1	59	66	12.6129
..(((..	chr12:56677436-56677695(-)$1	1	7	14	13.5806
..((..(	chr8:30034536-30034816(+)$1	1	227	234	12.4516
(((((((	chr3:47890565-47890843(+)$1	1	10	17	12.1290
((..(((	chr12:6879264-6879485(+)$1	1	46	53	12.4516
(((((((	chr8:145650133-145650380(-)$1	1	60	67	12.6129
..((.((	chr16:27497232-27497479(-)$1	1	191	198	13.7419
....)))	chr16:67228196-67228459(+)$1	1	78	85	13.1774

#PSSM
C : 0.91	c : 0.06	U : 0.01	
U : 0.90	u : 0.03	c : 0.03	C : 0.01	G : 0.01	
G : 0.90	g : 0.04	A : 0.01	u : 0.01	U : 0.01	
G : 0.69	C : 0.16	g : 0.06	A : 0.04	U : 0.03	
C : 0.80	G : 0.06	c : 0.06	U : 0.04	A : 0.01	
C : 0.83	c : 0.06	U : 0.04	A : 0.04	
C : 0.70	A : 0.11	U : 0.09	c : 0.03	G : 0.03	u : 0.01	

#score	843.1290322580634
#seq	62
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_CDS_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
bb::EEEEEKKFFFFFFKKDDDD:ccc[eeeeemmmmeeeee]cccEEEEEKKGGGGGGG{BBKKCCC::ffffffhhhhhhhh[annnnna]hhhhhhhh0000000000ffffff::::hhhhhhhh[ggggggg[abbpppppppbb7777777a]ggggggg22hhhhhhhhbbbbcccooooooccc]bb]bb:::::iiiiiiiii####aooooooa333iiiiiiiii:::::::eeeeettttttttttteeeee:CCC}BB}GGGGGGG?????EEEEE~~~~DDDDYYFF	chr22:36685101-36685441(-)$1	340	27	328	903.0000

#DB
))..(((((..((((((..((((.(((.(((((....))))).)))(((((..(((((((.((..(((..((((((((((((((.(.....).))))))))..........))))))....((((((((.(((((((.(((.......)).......).)))))))..))))))))(((((((......))).)).)).....(((((((((....(......)...))))))))).......(((((...........))))).))).)).))))))).....)))))....))))..))	chr22:36685101-36685441(-)$1	1	27	328	903.0000

#PSSM
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	

#score	903.0
#seq	1
#width	301
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_transcript_m3_run2.nuc.txt

#NT
GGCCGUGGG	chr22:49967884-49968162(-)$1	278	260	269	17.1000
AGCUGUGGG	chr3:14468876-14469185(+)$1	309	225	234	15.3000
GUCUGGGGG	chr7:150785229-150785451(+)$1	222	95	104	13.8000
GUCUGGGGG	chr16:88826123-88826354(-)$1	231	169	178	13.8000
ggccgcggg	chr16:89788388-89788679(+)$1	291	73	82	15.4000
GGCUGCGUG	chr5:177632335-177632604(+)$1	269	47	56	14.0000
GGCUGUGUG	chr2:236486228-236486473(+)$1	245	6	15	15.7000
GGCUGAGGU	chr22:20020821-20021069(+)$1	248	206	215	13.6000
GGCUGUGGU	chr22:23554372-23554646(+)$1	274	129	138	15.9000
GUCUGUGGG	chr16:88983523-88983756(-)$1	233	101	110	15.6000
UGCAGUGGG	chr1:1239752-1240017(-)$1	265	90	99	12.6000
GGCUGAGGG	chr16:85655663-85655902(+)$1	239	189	198	17.4000
GGCUGAGGA	chr17:73150128-73150384(-)$1	256	181	190	13.4000
GGCUGUGAG	chr16:89649631-89649857(+)$1	226	164	173	15.7000
GGCUGCGGG	chrX:40033450-40033763(-)$1	313	121	130	18.0000
GGCUGUGGG	chr19:907330-907618(-)$1	288	264	273	19.7000
ggccgcggg	chr12:69633641-69633912(+)$1	271	29	38	15.4000
GGCAGUGGG	chr9:139562747-139562988(+)$1	241	31	40	16.8000
GGCAGGGGG	chr21:45222701-45222961(+)$1	260	130	139	15.0000
GGUUGGGGG	chr17:27223995-27224281(-)$1	286	23	32	13.7000
GGCGGUGGG	chr6:155055356-155055627(+)$1	271	142	151	16.6000
GGCUGAGGG	chr11:65212140-65212388(+)$1	248	14	23	17.4000
ugcaguggg	chr17:76114125-76114428(-)$1	303	115	124	12.6000
GCCUGCGGG	chr7:149977284-149977526(-)$1	242	128	137	13.6000
CGCCGUGGG	chr1:19810837-19811121(-)$1	284	160	169	12.7000
GGCUGUGGG	chr16:15235554-15235832(-)$1	278	253	262	19.7000
GGGCGUGGG	chr1:230203569-230203835(+)$1	266	67	76	13.1000
GGCGGCGGG	chr7:50860732-50860990(-)$1	258	45	54	14.9000
GGCCGUGGG	chr1:167906396-167906682(+)$1	286	79	88	17.1000
GGCUGGAGG	chr19:4066398-4066656(-)$1	258	134	143	13.1000
GGCUGUGGG	chr16:2058688-2058968(-)$1	280	188	197	19.7000
UGCAGUGGG	chr7:148480203-148480462(+)$1	259	201	210	12.6000
GGGUGCGGG	chr8:103424133-103424401(-)$1	268	81	90	14.0000
GGUUGCGGG	chr17:7476141-7476366(+)$1	225	130	139	13.8000
GGGUGUGGG	chr1:1154789-1155028(-)$1	239	229	238	15.7000
GGCUGGGGG	chrX:152973790-152974049(-)$1	259	67	76	17.9000
GUCUGUGGG	chr16:89959167-89959422(+)$1	255	187	196	15.6000
GGCUUUGGG	chr22:38901703-38902036(-)$1	333	43	52	15.0000
GGCUGUGGC	chr9:139562442-139562662(+)$1	220	38	47	15.7000
GGCUGCGGU	chr19:903405-903646(-)$1	241	111	120	14.2000
GGCCAUGGG	chr22:30279787-30280125(+)$1	338	1	10	12.4000
GGCUGGGGG	chr19:3397194-3397472(+)$1	278	249	258	17.9000
GGCUGUGCG	chr12:125051065-125051405(-)$1	340	217	226	15.5000
GGCUGCGGC	chr19:2130969-2131245(-)$1	276	55	64	14.0000
GGCGGUGAG	chr16:89787512-89787773(+)$1	261	178	187	12.6000
GGCUGGGGU	chr2:242691574-242691844(+)$1	270	97	106	14.1000
GGCCGUGAG	chr5:21483431-21483717(+)$1	286	33	42	13.1000
GGGUGUGGG	chr7:50849602-50849888(-)$1	286	122	131	15.7000
GGCUGUGUG	chr22:22048157-22048433(+)$1	276	15	24	15.7000

#otherMatches

#Struct PSSM
ddd]bb:ii	chr2:97554009-97554249(-)$1	240	170	179	13.9000
nnnnfffff	chr22:49967884-49968162(-)$1	278	260	269	17.1000
DDDD}FFFF	chr3:14468876-14469185(+)$1	309	225	234	15.3000
EE{DDDDgg	chr7:150785229-150785451(+)$1	222	95	104	13.8000
[bb[iiiii	chr16:88826123-88826354(-)$1	231	169	178	13.8000
dddd22ddd	chr16:89788388-89788679(+)$1	291	73	82	15.4000
!!ddddmmm	chr5:177632335-177632604(+)$1	269	47	56	14.0000
lcccGGGGG	chr2:236486228-236486473(+)$1	245	6	15	15.7000
JJJJdddd!	chr22:20020821-20021069(+)$1	248	206	215	13.6000
ammmma]cc	chr22:23554372-23554646(+)$1	274	129	138	15.9000
ggGGGGGGG	chr16:88983523-88983756(-)$1	233	101	110	15.6000
eeee]bbcc	chr1:1239752-1240017(-)$1	265	90	99	12.6000
FFFFFFhhh	chr16:85655663-85655902(+)$1	239	189	198	17.4000
hhhh22bb]	chr17:73150128-73150384(-)$1	256	181	190	13.4000
ldddd:::E	chr16:89649631-89649857(+)$1	226	164	173	15.7000
ddd::====	chrX:40033450-40033763(-)$1	313	121	130	18.0000
JJJ}A}DDD	chr19:907330-907618(-)$1	288	264	273	19.7000
ffff[bbdd	chr12:69633641-69633912(+)$1	271	29	38	15.4000
ppccc]ddd	chr9:139562747-139562988(+)$1	241	31	40	16.8000
dd[ffffff	chr21:45222701-45222961(+)$1	260	130	139	15.0000
ca]eeeee:	chr17:27223995-27224281(-)$1	286	23	32	13.7000
ee]ffffff	chr6:155055356-155055627(+)$1	271	142	151	16.6000
a[bb[hhhh	chr11:65212140-65212388(+)$1	248	14	23	17.4000
ggg####ee	chr17:76114125-76114428(-)$1	303	115	124	12.6000
JJJJ::ccc	chr7:149977284-149977526(-)$1	242	128	137	13.6000
=========	chr1:19810837-19811121(-)$1	284	160	169	12.7000
lddddeeee	chr16:15235554-15235832(-)$1	278	253	262	19.7000
EEEE{FFFF	chr1:230203569-230203835(+)$1	266	67	76	13.1000
ffffffeee	chr7:50860732-50860990(-)$1	258	45	54	14.9000
ccc]bb]ee	chr1:167906396-167906682(+)$1	286	79	88	17.1000
a]ccc4444	chr19:4066398-4066656(-)$1	258	134	143	13.1000
eee]bbddd	chr16:2058688-2058968(-)$1	280	188	197	19.7000
ccc]a]ddd	chr7:148480203-148480462(+)$1	259	201	210	12.6000
[ffffffqq	chr8:103424133-103424401(-)$1	268	81	90	14.0000
dddd[ccco	chr17:7476141-7476366(+)$1	225	130	139	13.8000
GGGGGGGBB	chr1:1154789-1155028(-)$1	239	229	238	15.7000
]eeeeeEEE	chrX:152973790-152974049(-)$1	259	67	76	17.9000
gggg[bb[b	chr16:89959167-89959422(+)$1	255	187	196	15.6000
bb333ffff	chr22:38901703-38902036(-)$1	333	43	52	15.0000
cccmmmmcc	chr9:139562442-139562662(+)$1	220	38	47	15.7000
ff####===	chr19:903405-903646(-)$1	241	111	120	14.2000
::CCC{EEE	chr22:30279787-30280125(+)$1	338	1	10	12.4000
]cccdddd!	chr19:3397194-3397472(+)$1	278	249	258	17.9000
eeeeBB}HH	chr12:125051065-125051405(-)$1	340	217	226	15.5000
iiiiiFFFF	chr19:2130969-2131245(-)$1	276	55	64	14.0000
2dddd]a]d	chr16:89787512-89787773(+)$1	261	178	187	12.6000
]hhhhhhhh	chr2:242691574-242691844(+)$1	270	97	106	14.1000
gggggg"""	chr5:21483431-21483717(+)$1	286	33	42	13.1000
hhhhh]bb:	chr7:50849602-50849888(-)$1	286	122	131	15.7000
CCC{DDDDM	chr22:22048157-22048433(+)$1	276	15	24	15.7000

#DB
))).)).((	chr2:97554009-97554249(-)$1	1	170	179	13.9000
....)))))	chr22:49967884-49968162(-)$1	1	260	269	17.1000
)))).))))	chr3:14468876-14469185(+)$1	1	225	234	15.3000
((.((((((	chr7:150785229-150785451(+)$1	1	95	104	13.8000
.((.(((((	chr16:88826123-88826354(-)$1	1	169	178	13.8000
))))..)))	chr16:89788388-89788679(+)$1	1	73	82	15.4000
..((((...	chr5:177632335-177632604(+)$1	1	47	56	14.0000
.)))(((((	chr2:236486228-236486473(+)$1	1	6	15	15.7000
))))((((.	chr22:20020821-20021069(+)$1	1	206	215	13.6000
(....).))	chr22:23554372-23554646(+)$1	1	129	138	15.9000
)))))))))	chr16:88983523-88983756(-)$1	1	101	110	15.6000
)))).))))	chr1:1239752-1240017(-)$1	1	90	99	12.6000
))))))(((	chr16:85655663-85655902(+)$1	1	189	198	17.4000
))))..)).	chr17:73150128-73150384(-)$1	1	181	190	13.4000
.))))...)	chr16:89649631-89649857(+)$1	1	164	173	15.7000
)))..((((	chrX:40033450-40033763(-)$1	1	121	130	18.0000
))).).)))	chr19:907330-907618(-)$1	1	264	273	19.7000
((((.((((	chr12:69633641-69633912(+)$1	1	29	38	15.4000
..))).)))	chr9:139562747-139562988(+)$1	1	31	40	16.8000
((.((((((	chr21:45222701-45222961(+)$1	1	130	139	15.0000
)).))))).	chr17:27223995-27224281(-)$1	1	23	32	13.7000
)).))))))	chr6:155055356-155055627(+)$1	1	142	151	16.6000
(.((.((((	chr11:65212140-65212388(+)$1	1	14	23	17.4000
(((....((	chr17:76114125-76114428(-)$1	1	115	124	12.6000
((((..(((	chr7:149977284-149977526(-)$1	1	128	137	13.6000
(((((((((	chr1:19810837-19811121(-)$1	1	160	169	12.7000
.))))))))	chr16:15235554-15235832(-)$1	1	253	262	19.7000
((((.((((	chr1:230203569-230203835(+)$1	1	67	76	13.1000
(((((((((	chr7:50860732-50860990(-)$1	1	45	54	14.9000
))).)).))	chr1:167906396-167906682(+)$1	1	79	88	17.1000
).)))....	chr19:4066398-4066656(-)$1	1	134	143	13.1000
))).))(((	chr16:2058688-2058968(-)$1	1	188	197	19.7000
))).).)))	chr7:148480203-148480462(+)$1	1	201	210	12.6000
.((((((..	chr8:103424133-103424401(-)$1	1	81	90	14.0000
((((.(((.	chr17:7476141-7476366(+)$1	1	130	139	13.8000
)))))))))	chr1:1154789-1155028(-)$1	1	229	238	15.7000
.)))))(((	chrX:152973790-152974049(-)$1	1	67	76	17.9000
((((.((.(	chr16:89959167-89959422(+)$1	1	187	196	15.6000
))...))))	chr22:38901703-38902036(-)$1	1	43	52	15.0000
(((....))	chr9:139562442-139562662(+)$1	1	38	47	15.7000
((....(((	chr19:903405-903646(-)$1	1	111	120	14.2000
..(((.(((	chr22:30279787-30280125(+)$1	1	1	10	12.4000
.)))((((.	chr19:3397194-3397472(+)$1	1	249	258	17.9000
)))))).))	chr12:125051065-125051405(-)$1	1	217	226	15.5000
)))))((((	chr19:2130969-2131245(-)$1	1	55	64	14.0000
.)))).).)	chr16:89787512-89787773(+)$1	1	178	187	12.6000
.))))))))	chr2:242691574-242691844(+)$1	1	97	106	14.1000
((((((...	chr5:21483431-21483717(+)$1	1	33	42	13.1000
))))).)).	chr7:50849602-50849888(-)$1	1	122	131	15.7000
(((.((((.	chr22:22048157-22048433(+)$1	1	15	24	15.7000

#PSSM
G : 0.86	g : 0.04	U : 0.04	A : 0.02	u : 0.02	C : 0.02	
G : 0.84	U : 0.08	g : 0.06	C : 0.02	
C : 0.82	G : 0.08	c : 0.06	U : 0.04	
U : 0.68	C : 0.12	A : 0.08	G : 0.06	c : 0.04	a : 0.02	
G : 0.90	g : 0.06	U : 0.02	A : 0.02	
U : 0.52	G : 0.18	C : 0.16	A : 0.08	c : 0.04	u : 0.02	
G : 0.92	g : 0.06	A : 0.02	
G : 0.80	g : 0.06	U : 0.06	A : 0.06	C : 0.02	
G : 0.78	U : 0.08	g : 0.06	A : 0.04	C : 0.04	

#score	757.8000000000006
#seq	50
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_UTR_m2_run1.nuc.txt

#NT
GCCGCCGCAGCCC	chr16:50582252-50582569(+)$1	317	195	208	27.4090
CCUGCCGCCGCCG	chr1:225997728-225997976(+)$1	248	111	124	20.5909
GCCGCGGCCGACC	chr21:40752159-40752513(+)$1	354	160	173	22.6363
gccgccgccgccu	chr6:24720314-24720540(-)$1	226	15	28	27.8636
GCCGCCGCUUCCC	chr20:4666999-4667259(+)$1	260	37	50	23.3181
UCCGCCGCUGCCC	chr1:46151982-46152224(-)$1	242	127	140	23.6590
GCCCCCGCCcccg	chr8:125487220-125487487(+)$1	267	49	62	20.9318
UCCCUCGCCGCCC	chr10:104262256-104262564(-)$1	308	54	67	19.6818
GCCGUCGCCGCCC	chr4:123073609-123073838(+)$1	229	41	54	27.0681
GCCGCCGCCGCCU	chr1:205600735-205601003(-)$1	268	97	110	27.8636
gccgccgcggccc	chr16:70719610-70719867(-)$1	257	146	159	27.7499
GCCGCGGCCGCCC	chr7:74072020-74072277(+)$1	257	94	107	27.2954
GCGUCCGCCGCCC	chr22:38668821-38669111(-)$1	290	36	49	22.8636
GCCGCCGCCACCC	chr7:45927997-45928230(+)$1	233	130	143	26.8409
GGCGCCGCGGCCC	chr8:38239599-38239878(-)$1	279	19	32	22.9772
GCCGCCACCGCCC	chr1:182992654-182992910(+)$1	256	59	72	26.4999
CCCGCCGCCGCCC	chr9:90112805-90113080(+)$1	275	124	137	27.2954
CCCGCUGCGGCCC	chr19:7580960-7581239(+)$1	279	6	19	20.0227
GCCGUGGCCGCCC	chr17:79818296-79818521(-)$1	225	201	214	23.3181
GCCGCCGCCGCCG	chr8:136469601-136469965(+)$1	364	348	361	28.7727
GCCGCUGCCGCCG	chr3:98620175-98620431(-)$1	256	166	179	24.7954
gccgccgccgccg	chr5:132298884-132299204(-)$1	320	61	74	28.7727
UCCGCCGCUGCCC	chr1:46152024-46152293(-)$1	269	196	209	23.6590
GCCGCCGCCGCCA	chr2:85838959-85839265(-)$1	306	282	295	27.8636
gccgaggccgccc	chr4:1242729-1243000(-)$1	271	176	189	22.9772
gccgccgccgcgc	chr12:106641600-106641872(-)$1	272	225	238	26.6136
gccgccgccgccg	chr5:14871559-14871876(-)$1	317	28	41	28.7727
gccgccgccgcug	chr17:18087450-18087680(+)$1	230	194	207	24.4545
GCCACCGCCGCCG	chr2:159313546-159313827(+)$1	281	0	13	24.7954
gcccccggcgccc	chr16:52580733-52580983(-)$1	250	67	80	22.7499
gcgcccgccgccc	chr14:95786005-95786319(-)$1	314	141	154	23.2045
gccuccgcggccc	chr17:16256514-16256854(-)$1	340	161	174	23.8863
GCCGUCACCGCCC	chr22:37962036-37962301(+)$1	265	11	24	22.5227
gccgccgccUGCC	chr10:72648187-72648446(-)$1	259	111	124	22.1818
GCCGCAGCCGCCC	chr20:32581616-32581867(+)$1	251	224	237	26.9545
GCCGCCGCAGCAC	chr11:1330607-1330867(-)$1	260	125	138	22.9772
gccgccgccgccg	chr2:235860581-235860913(+)$1	332	123	136	28.7727
GCCGCCGCCACCC	chr10:33246972-33247291(-)$1	319	94	107	26.8409
gccgccgccgccg	chr22:20104946-20105287(+)$1	341	203	216	28.7727
GCAGCCGCCGCUC	chr1:8086180-8086449(-)$1	269	212	225	22.2954
CCCGCCGCCGCCC	chr10:88854294-88854547(-)$1	253	129	142	27.2954
gccgccgccgcca	chr8:119123911-119124160(-)$1	249	187	200	27.8636
gccgccgccgccc	chr2:102314320-102314579(+)$1	259	73	86	31.0454

#otherMatches

#Struct PSSM
dddd!!eeeeenn	chr19:4457632-4457890(-)$1	258	159	172	24.2272
GGGGGGGYYCCC:	chr16:50582252-50582569(+)$1	317	195	208	27.4090
eeeecccbb[ddd	chr1:225997728-225997976(+)$1	248	111	124	20.5909
eedddd[cccnnn	chr21:40752159-40752513(+)$1	354	160	173	22.6363
BBCCC{DDDD{DD	chr6:24720314-24720540(-)$1	226	15	28	27.8636
bbCCC{HHHHHHH	chr20:4666999-4667259(+)$1	260	37	50	23.3181
EEYYBBJJJJJJJ	chr1:46151982-46152224(-)$1	242	127	140	23.6590
eeeee]dddd]ae	chr8:125487220-125487487(+)$1	267	49	62	20.9318
b]ddddffffffp	chr10:104262256-104262564(-)$1	308	54	67	19.6818
[bb[eeeeebb""	chr4:123073609-123073838(+)$1	229	41	54	27.0681
2hhhhhhhh:FFF	chr1:205600735-205601003(-)$1	268	97	110	27.8636
eemmmmeeeee22	chr16:70719610-70719867(-)$1	257	146	159	27.7499
EEEEEHHHHHHHH	chr7:74072020-74072277(+)$1	257	94	107	27.2954
HHH::gggggggt	chr22:38668821-38669111(-)$1	290	36	49	22.8636
cmmmmccc:::::	chr7:45927997-45928230(+)$1	233	130	143	26.8409
!ggggggg[bb!!	chr8:38239599-38239878(-)$1	279	19	32	22.9772
aooooooa]bb]=	chr1:182992654-182992910(+)$1	256	59	72	26.4999
555cccddddlll	chr9:90112805-90113080(+)$1	275	124	137	27.2954
FFFKKA{HHHHHH	chr19:7580960-7581239(+)$1	279	6	19	20.0227
JJJJJJJJDDDDD	chr17:79818296-79818521(-)$1	225	201	214	23.3181
}EEEEEDDDD}DD	chr8:136469601-136469965(+)$1	364	348	361	28.7727
]dddd]cccbb[d	chr3:98620175-98620431(-)$1	256	166	179	24.7954
b]ddddCCC}CCC	chr5:132298884-132299204(-)$1	320	61	74	28.7727
EEYYBBJJJJJJJ	chr1:46152024-46152293(-)$1	269	196	209	23.6590
}CCC}GGGGGGG}	chr2:85838959-85839265(-)$1	306	282	295	27.8636
cc55555ffffff	chr4:1242729-1243000(-)$1	271	176	189	22.9772
EE}DDDD::::dd	chr12:106641600-106641872(-)$1	272	225	238	26.6136
ee]bb]bb]bba:	chr5:14871559-14871876(-)$1	317	28	41	28.7727
cc]cccGGGGGGG	chr17:18087450-18087680(+)$1	230	194	207	24.4545
ffffff[cccmmm	chr2:159313546-159313827(+)$1	281	0	13	24.7954
%%%%%%ffffff[	chr16:52580733-52580983(-)$1	250	67	80	22.7499
hhhhhhh]bb333	chr14:95786005-95786319(-)$1	314	141	154	23.2045
fffnnnnnfffff	chr17:16256514-16256854(-)$1	340	161	174	23.8863
tttttttdddd::	chr22:37962036-37962301(+)$1	265	11	24	22.5227
ggggggFFFFFF:	chr10:72648187-72648446(-)$1	259	111	124	22.1818
ggggg]=======	chr20:32581616-32581867(+)$1	251	224	237	26.9545
bb[ggggggg"""	chr11:1330607-1330867(-)$1	260	125	138	22.9772
fffIIIIIIIII:	chr2:235860581-235860913(+)$1	332	123	136	28.7727
IIIIII}BB::::	chr10:33246972-33247291(-)$1	319	94	107	26.8409
CCC{EEEEEKKDD	chr22:20104946-20105287(+)$1	341	203	216	28.7727
???CCC}CCCGGG	chr1:8086180-8086449(-)$1	269	212	225	22.2954
h::ccccccffff	chr10:88854294-88854547(-)$1	253	129	142	27.2954
22ccc4444ccc]	chr8:119123911-119124160(-)$1	249	187	200	27.8636
ccc"""bba[bbd	chr2:102314320-102314579(+)$1	259	73	86	31.0454

#DB
((((..(((((..	chr19:4457632-4457890(-)$1	1	159	172	24.2272
)))))))..))).	chr16:50582252-50582569(+)$1	1	195	208	27.4090
(((((((((.(((	chr1:225997728-225997976(+)$1	1	111	124	20.5909
((((((.(((...	chr21:40752159-40752513(+)$1	1	160	173	22.6363
(((((.((((.((	chr6:24720314-24720540(-)$1	1	15	28	27.8636
))(((.(((((((	chr20:4666999-4667259(+)$1	1	37	50	23.3181
))..)))))))))	chr1:46151982-46152224(-)$1	1	127	140	23.6590
))))).)))).)(	chr8:125487220-125487487(+)$1	1	49	62	20.9318
).))))((((((.	chr10:104262256-104262564(-)$1	1	54	67	19.6818
.((.(((((((..	chr4:123073609-123073838(+)$1	1	41	54	27.0681
.)))))))).(((	chr1:205600735-205601003(-)$1	1	97	110	27.8636
((....)))))..	chr16:70719610-70719867(-)$1	1	146	159	27.7499
(((((((((((((	chr7:74072020-74072277(+)$1	1	94	107	27.2954
(((..(((((((.	chr22:38668821-38669111(-)$1	1	36	49	22.8636
(....))).....	chr7:45927997-45928230(+)$1	1	130	143	26.8409
.(((((((.((..	chr8:38239599-38239878(-)$1	1	19	32	22.9772
(......).)).)	chr1:182992654-182992910(+)$1	1	59	72	26.4999
...)))((((...	chr9:90112805-90113080(+)$1	1	124	137	27.2954
(((..(.((((((	chr19:7580960-7581239(+)$1	1	6	19	20.0227
)))))))))))))	chr17:79818296-79818521(-)$1	1	201	214	23.3181
.))))))))).))	chr8:136469601-136469965(+)$1	1	348	361	28.7727
.)))).)))((.(	chr3:98620175-98620431(-)$1	1	166	179	24.7954
).))))))).)))	chr5:132298884-132299204(-)$1	1	61	74	28.7727
))..)))))))))	chr1:46152024-46152293(-)$1	1	196	209	23.6590
.))).))))))).	chr2:85838959-85839265(-)$1	1	282	295	27.8636
)).....))))))	chr4:1242729-1243000(-)$1	1	176	189	22.9772
)).))))....((	chr12:106641600-106641872(-)$1	1	225	238	26.6136
)).)).)).))).	chr5:14871559-14871876(-)$1	1	28	41	28.7727
)).))))))))))	chr17:18087450-18087680(+)$1	1	194	207	24.4545
((((((.(((...	chr2:159313546-159313827(+)$1	1	0	13	24.7954
......((((((.	chr16:52580733-52580983(-)$1	1	67	80	22.7499
))))))).))...	chr14:95786005-95786319(-)$1	1	141	154	23.2045
(((.....)))))	chr17:16256514-16256854(-)$1	1	161	174	23.8863
.......))))..	chr22:37962036-37962301(+)$1	1	11	24	22.5227
)))))))))))).	chr10:72648187-72648446(-)$1	1	111	124	22.1818
))))).)))))))	chr20:32581616-32581867(+)$1	1	224	237	26.9545
((.(((((((...	chr11:1330607-1330867(-)$1	1	125	138	22.9772
)))(((((((((.	chr2:235860581-235860913(+)$1	1	123	136	28.7727
)))))).))....	chr10:33246972-33247291(-)$1	1	94	107	26.8409
(((.(((((..((	chr22:20104946-20105287(+)$1	1	203	216	28.7727
...))).))))))	chr1:8086180-8086449(-)$1	1	212	225	22.2954
)..((((((((((	chr10:88854294-88854547(-)$1	1	129	142	27.2954
..)))....))).	chr8:119123911-119124160(-)$1	1	187	200	27.8636
(((...(((.(((	chr2:102314320-102314579(+)$1	1	73	86	31.0454

#PSSM
G : 0.47	g : 0.36	C : 0.09	U : 0.06	
C : 0.61	c : 0.36	G : 0.02	
C : 0.56	c : 0.34	U : 0.02	G : 0.02	g : 0.02	A : 0.02	
G : 0.54	g : 0.27	c : 0.06	C : 0.04	U : 0.02	A : 0.02	u : 0.02	
C : 0.54	c : 0.34	U : 0.09	a : 0.02	
C : 0.49	c : 0.34	G : 0.06	U : 0.04	g : 0.02	A : 0.02	
G : 0.59	g : 0.36	A : 0.04	
C : 0.63	c : 0.34	g : 0.02	
C : 0.47	c : 0.29	g : 0.06	U : 0.06	A : 0.04	G : 0.04	
G : 0.54	g : 0.34	U : 0.04	A : 0.04	c : 0.02	
C : 0.59	c : 0.36	A : 0.02	G : 0.02	
C : 0.59	c : 0.31	g : 0.02	u : 0.02	A : 0.02	U : 0.02	
C : 0.49	c : 0.18	g : 0.13	G : 0.09	u : 0.02	U : 0.02	A : 0.02	a : 0.02	

#score	1108.9545454545446
#seq	44
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_UTR_m3_run1.nuc.txt

#NT
GAA	chr10:99218014-99218308(-)$1	294	13	16	8.9999
GAA	chr13:107196048-107196277(-)$1	229	44	47	8.9999
GAA	chr4:110745690-110745934(+)$1	244	54	57	8.9999
GAA	chr15:76508579-76508799(-)$1	220	19	22	8.9999
GAA	chr11:18428785-18429000(+)$1	215	164	167	8.9999
GAA	chr9:127998679-127998898(-)$1	219	10	13	8.9999
GAA	chr1:21069306-21069559(-)$1	253	12	15	8.9999
GAA	chr15:73043756-73044113(-)$1	357	35	38	8.9999
GAA	chr6:38644074-38644328(-)$1	254	166	169	8.9999
GAA	chr10:99218108-99218372(-)$1	264	2	5	8.9999
GAA	chr3:49396927-49397255(-)$1	328	66	69	8.9999
GAA	chr15:48634237-48634505(+)$1	268	27	30	8.9999
GAA	chr12:4414184-4414486(+)$1	302	87	90	8.9999
GAA	chr17:80724065-80724324(+)$1	259	3	6	8.9999
GAA	chr8:23429821-23430032(+)$1	211	12	15	8.9999
GAA	chr5:134670371-134670618(-)$1	247	5	8	8.9999
GAA	chr1:10479870-10480112(+)$1	242	65	68	8.9999
GAA	chrX:123234378-123234716(+)$1	338	0	3	8.9999
GAA	chr19:18417679-18417912(-)$1	233	97	100	8.9999
GAA	chrX:135956040-135956286(-)$1	246	23	26	8.9999
GAA	chr6:31732355-31732606(+)$1	251	60	63	8.9999
GAA	chr18:43666031-43666296(-)$1	265	87	90	8.9999
GAA	chr20:462915-463170(-)$1	255	86	89	8.9999
GAA	chr9:134371715-134371962(+)$1	247	0	3	8.9999
GAA	chr16:21994552-21994807(+)$1	255	2	5	8.9999
GAA	chr4:761192-761440(-)$1	248	5	8	8.9999
GAA	chr1:113212740-113212968(+)$1	228	4	7	8.9999
GAA	chr2:10924103-10924352(-)$1	249	32	35	8.9999
GAA	chr11:18428963-18429216(+)$1	253	3	6	8.9999
GAA	chr1:183595960-183596274(-)$1	314	15	18	8.9999
GAA	chr16:67263355-67263651(-)$1	296	33	36	8.9999
GAA	chr3:186507408-186507633(+)$1	225	60	63	8.9999
GAA	chr20:32868331-32868592(-)$1	261	11	14	8.9999
GAA	chr5:54720530-54720803(+)$1	273	17	20	8.9999
GAA	chr1:226107526-226107829(-)$1	303	12	15	8.9999
GAA	chr6:160199837-160200115(-)$1	278	3	6	8.9999
GAA	chr2:63834000-63834276(+)$1	276	6	9	8.9999
GAA	chr2:114715123-114715430(+)$1	307	12	15	8.9999
GAA	chr1:156278756-156279025(-)$1	269	64	67	8.9999
GAA	chr17:38328077-38328380(+)$1	303	145	148	8.9999
GAA	chr6:49572919-49573165(-)$1	246	15	18	8.9999
GAA	chr17:47490515-47490754(-)$1	239	17	20	8.9999
gaa	chr11:2152652-2153021(-)$1	369	58	61	8.9999
GAA	chr12:21788290-21788506(-)$1	216	9	12	8.9999
GAA	chr2:84650636-84650954(-)$1	318	54	57	8.9999
GAA	chr10:73576391-73576613(-)$1	222	100	103	8.9999
GAA	chr6:44221404-44221617(+)$1	213	69	72	8.9999
GAA	chr3:49135329-49135588(-)$1	259	159	162	8.9999
GAA	chr3:128996360-128996566(+)$1	206	8	11	8.9999
GAA	chr11:14526504-14526728(-)$1	224	30	33	8.9999
GAA	chr17:62496127-62496403(-)$1	276	51	54	8.9999
GAA	chr5:70952893-70953226(+)$1	333	68	71	8.9999
GAA	chr1:154951537-154951749(+)$1	212	115	118	8.9999
GAA	chr20:34291514-34291776(-)$1	262	42	45	8.9999
GAA	chr12:22218364-22218654(+)$1	290	91	94	8.9999
GAA	chrX:16862985-16863239(-)$1	254	16	19	8.9999
GAA	chr12:98995263-98995476(+)$1	213	15	18	8.9999
GAA	chr7:158526489-158526766(-)$1	277	42	45	8.9999
GAA	chr2:198351586-198351838(-)$1	252	0	3	8.9999
GAA	chr9:138774566-138774814(-)$1	248	17	20	8.9999
GAA	chr12:69995091-69995380(+)$1	289	66	69	8.9999
GAA	chr11:18428819-18429031(+)$1	212	130	133	8.9999
GAA	chr4:104027146-104027473(-)$1	327	139	142	8.9999
GAA	chr1:8045021-8045357(+)$1	336	30	33	8.9999
GAA	chr1:160966002-160966274(-)$1	272	44	47	8.9999
GAA	chr20:32868292-32868504(-)$1	212	79	82	8.9999
GAA	chr16:89629586-89629817(+)$1	231	41	44	8.9999
gaa	chr13:29252090-29252402(+)$1	312	18	21	8.9999
GAA	chrX:154005736-154005999(+)$1	263	53	56	8.9999
GAA	chr10:71962796-71963038(-)$1	242	61	64	8.9999
GAA	chr5:95131211-95131454(+)$1	243	42	45	8.9999
GAA	chr17:74730240-74730502(-)$1	262	152	155	8.9999
GAA	chr2:63834132-63834411(+)$1	279	22	25	8.9999
GAA	chr18:43669510-43669798(-)$1	288	5	8	8.9999
GAA	chr14:101201151-101201486(+)$1	335	30	33	8.9999
GAA	chr2:65495814-65496064(+)$1	250	6	9	8.9999
GAA	chr8:11696274-11696532(+)$1	258	2	5	8.9999
GAA	chr4:48862854-48863119(+)$1	265	137	140	8.9999
GAA	chr11:32608522-32608791(+)$1	269	58	61	8.9999
GAA	chr6:26204758-26205026(+)$1	268	38	41	8.9999
GAA	chr17:40463241-40463514(+)$1	273	11	14	8.9999
GAA	chr12:67706637-67706919(+)$1	282	20	23	8.9999
GAA	chr7:127732102-127732392(+)$1	290	134	137	8.9999
GAA	chr17:79477323-79477573(-)$1	250	20	23	8.9999
GAA	chr17:16284334-16284558(+)$1	224	210	213	8.9999
GAA	chr1:203838979-203839201(+)$1	222	80	83	8.9999
GAA	chr16:2821225-2821455(+)$1	230	25	28	8.9999
GAA	chr14:70238506-70238764(+)$1	258	25	28	8.9999
GAA	chr6:53132354-53132597(-)$1	243	0	3	8.9999
GAA	chr22:24967867-24968158(+)$1	291	28	31	8.9999
GAA	chr11:2152467-2152736(-)$1	269	101	104	8.9999
gaa	chr14:92583744-92584087(-)$1	343	10	13	8.9999
GAA	chr6:31785513-31785771(+)$1	258	46	49	8.9999
GAA	chr16:23592259-23592521(-)$1	262	5	8	8.9999
GAA	chr11:764799-765068(+)$1	269	13	16	8.9999

#otherMatches

#Struct PSSM
C::	chr1:155882920-155883181(-)$1	261	6	9	8.9999
yyy	chr10:99218014-99218308(-)$1	294	13	16	8.9999
eee	chr13:107196048-107196277(-)$1	229	44	47	8.9999
hhh	chr4:110745690-110745934(+)$1	244	54	57	8.9999
hhh	chr15:76508579-76508799(-)$1	220	19	22	8.9999
dd2	chr11:18428785-18429000(+)$1	215	164	167	8.9999
$$$	chr9:127998679-127998898(-)$1	219	10	13	8.9999
vvv	chr1:21069306-21069559(-)$1	253	12	15	8.9999
::i	chr15:73043756-73044113(-)$1	357	35	38	8.9999
f!!	chr6:38644074-38644328(-)$1	254	166	169	8.9999
fff	chr10:99218108-99218372(-)$1	264	2	5	8.9999
JJJ	chr3:49396927-49397255(-)$1	328	66	69	8.9999
rrr	chr15:48634237-48634505(+)$1	268	27	30	8.9999
C::	chr12:4414184-4414486(+)$1	302	87	90	8.9999
:::	chr17:80724065-80724324(+)$1	259	3	6	8.9999
[dd	chr8:23429821-23430032(+)$1	211	12	15	8.9999
eee	chr5:134670371-134670618(-)$1	247	5	8	8.9999
D:d	chr1:10479870-10480112(+)$1	242	65	68	8.9999
:::	chrX:123234378-123234716(+)$1	338	0	3	8.9999
e33	chr19:18417679-18417912(-)$1	233	97	100	8.9999
+++	chrX:135956040-135956286(-)$1	246	23	26	8.9999
ggg	chr6:31732355-31732606(+)$1	251	60	63	8.9999
ee[	chr18:43666031-43666296(-)$1	265	87	90	8.9999
ppp	chr20:462915-463170(-)$1	255	86	89	8.9999
:::	chr9:134371715-134371962(+)$1	247	0	3	8.9999
:::	chr16:21994552-21994807(+)$1	255	2	5	8.9999
:::	chr4:761192-761440(-)$1	248	5	8	8.9999
###	chr1:113212740-113212968(+)$1	228	4	7	8.9999
d[e	chr2:10924103-10924352(-)$1	249	32	35	8.9999
GGG	chr11:18428963-18429216(+)$1	253	3	6	8.9999
###	chr1:183595960-183596274(-)$1	314	15	18	8.9999
""c	chr16:67263355-67263651(-)$1	296	33	36	8.9999
qqq	chr3:186507408-186507633(+)$1	225	60	63	8.9999
BKK	chr20:32868331-32868592(-)$1	261	11	14	8.9999
bbs	chr5:54720530-54720803(+)$1	273	17	20	8.9999
""e	chr1:226107526-226107829(-)$1	303	12	15	8.9999
EEE	chr6:160199837-160200115(-)$1	278	3	6	8.9999
ggg	chr2:63834000-63834276(+)$1	276	6	9	8.9999
GGG	chr2:114715123-114715430(+)$1	307	12	15	8.9999
ccc	chr1:156278756-156279025(-)$1	269	64	67	8.9999
:::	chr17:38328077-38328380(+)$1	303	145	148	8.9999
:::	chr6:49572919-49573165(-)$1	246	15	18	8.9999
%%%	chr17:47490515-47490754(-)$1	239	17	20	8.9999
ppp	chr11:2152652-2153021(-)$1	369	58	61	8.9999
FFF	chr12:21788290-21788506(-)$1	216	9	12	8.9999
ddd	chr2:84650636-84650954(-)$1	318	54	57	8.9999
h[a	chr10:73576391-73576613(-)$1	222	100	103	8.9999
odd	chr6:44221404-44221617(+)$1	213	69	72	8.9999
d!!	chr3:49135329-49135588(-)$1	259	159	162	8.9999
dnn	chr3:128996360-128996566(+)$1	206	8	11	8.9999
cc:	chr11:14526504-14526728(-)$1	224	30	33	8.9999
:::	chr17:62496127-62496403(-)$1	276	51	54	8.9999
ddd	chr5:70952893-70953226(+)$1	333	68	71	8.9999
fff	chr1:154951537-154951749(+)$1	212	115	118	8.9999
ggg	chr20:34291514-34291776(-)$1	262	42	45	8.9999
"ff	chr12:22218364-22218654(+)$1	290	91	94	8.9999
CCC	chrX:16862985-16863239(-)$1	254	16	19	8.9999
nnn	chr12:98995263-98995476(+)$1	213	15	18	8.9999
d::	chr7:158526489-158526766(-)$1	277	42	45	8.9999
:::	chr2:198351586-198351838(-)$1	252	0	3	8.9999
nnn	chr9:138774566-138774814(-)$1	248	17	20	8.9999
d22	chr12:69995091-69995380(+)$1	289	66	69	8.9999
dd2	chr11:18428819-18429031(+)$1	212	130	133	8.9999
ccD	chr4:104027146-104027473(-)$1	327	139	142	8.9999
ggg	chr1:8045021-8045357(+)$1	336	30	33	8.9999
sss	chr1:160966002-160966274(-)$1	272	44	47	8.9999
xxx	chr20:32868292-32868504(-)$1	212	79	82	8.9999
ddd	chr16:89629586-89629817(+)$1	231	41	44	8.9999
===	chr13:29252090-29252402(+)$1	312	18	21	8.9999
ff:	chrX:154005736-154005999(+)$1	263	53	56	8.9999
CCC	chr10:71962796-71963038(-)$1	242	61	64	8.9999
:::	chr5:95131211-95131454(+)$1	243	42	45	8.9999
F::	chr17:74730240-74730502(-)$1	262	152	155	8.9999
eee	chr2:63834132-63834411(+)$1	279	22	25	8.9999
:::	chr18:43669510-43669798(-)$1	288	5	8	8.9999
fff	chr14:101201151-101201486(+)$1	335	30	33	8.9999
FFG	chr2:65495814-65496064(+)$1	250	6	9	8.9999
BB{	chr8:11696274-11696532(+)$1	258	2	5	8.9999
:cc	chr4:48862854-48863119(+)$1	265	137	140	8.9999
===	chr11:32608522-32608791(+)$1	269	58	61	8.9999
ccc	chr6:26204758-26205026(+)$1	268	38	41	8.9999
FFF	chr17:40463241-40463514(+)$1	273	11	14	8.9999
DDD	chr12:67706637-67706919(+)$1	282	20	23	8.9999
dd3	chr7:127732102-127732392(+)$1	290	134	137	8.9999
!ee	chr17:79477323-79477573(-)$1	250	20	23	8.9999
}HH	chr17:16284334-16284558(+)$1	224	210	213	8.9999
""c	chr1:203838979-203839201(+)$1	222	80	83	8.9999
c%%	chr16:2821225-2821455(+)$1	230	25	28	8.9999
FF=	chr14:70238506-70238764(+)$1	258	25	28	8.9999
::g	chr6:53132354-53132597(-)$1	243	0	3	8.9999
[ii	chr22:24967867-24968158(+)$1	291	28	31	8.9999
iii	chr11:2152467-2152736(-)$1	269	101	104	8.9999
III	chr14:92583744-92584087(-)$1	343	10	13	8.9999
fff	chr6:31785513-31785771(+)$1	258	46	49	8.9999
GGG	chr16:23592259-23592521(-)$1	262	5	8	8.9999
CC{	chr11:764799-765068(+)$1	269	13	16	8.9999

#DB
(..	chr1:155882920-155883181(-)$1	1	6	9	8.9999
...	chr10:99218014-99218308(-)$1	1	13	16	8.9999
(((	chr13:107196048-107196277(-)$1	1	44	47	8.9999
(((	chr4:110745690-110745934(+)$1	1	54	57	8.9999
(((	chr15:76508579-76508799(-)$1	1	19	22	8.9999
)).	chr11:18428785-18429000(+)$1	1	164	167	8.9999
...	chr9:127998679-127998898(-)$1	1	10	13	8.9999
...	chr1:21069306-21069559(-)$1	1	12	15	8.9999
..(	chr15:73043756-73044113(-)$1	1	35	38	8.9999
(..	chr6:38644074-38644328(-)$1	1	166	169	8.9999
(((	chr10:99218108-99218372(-)$1	1	2	5	8.9999
(((	chr3:49396927-49397255(-)$1	1	66	69	8.9999
...	chr15:48634237-48634505(+)$1	1	27	30	8.9999
(..	chr12:4414184-4414486(+)$1	1	87	90	8.9999
...	chr17:80724065-80724324(+)$1	1	3	6	8.9999
.((	chr8:23429821-23430032(+)$1	1	12	15	8.9999
(((	chr5:134670371-134670618(-)$1	1	5	8	8.9999
(.(	chr1:10479870-10480112(+)$1	1	65	68	8.9999
...	chrX:123234378-123234716(+)$1	1	0	3	8.9999
)..	chr19:18417679-18417912(-)$1	1	97	100	8.9999
...	chrX:135956040-135956286(-)$1	1	23	26	8.9999
(((	chr6:31732355-31732606(+)$1	1	60	63	8.9999
((.	chr18:43666031-43666296(-)$1	1	87	90	8.9999
...	chr20:462915-463170(-)$1	1	86	89	8.9999
...	chr9:134371715-134371962(+)$1	1	0	3	8.9999
...	chr16:21994552-21994807(+)$1	1	2	5	8.9999
...	chr4:761192-761440(-)$1	1	5	8	8.9999
...	chr1:113212740-113212968(+)$1	1	4	7	8.9999
(.(	chr2:10924103-10924352(-)$1	1	32	35	8.9999
(((	chr11:18428963-18429216(+)$1	1	3	6	8.9999
...	chr1:183595960-183596274(-)$1	1	15	18	8.9999
..(	chr16:67263355-67263651(-)$1	1	33	36	8.9999
...	chr3:186507408-186507633(+)$1	1	60	63	8.9999
(..	chr20:32868331-32868592(-)$1	1	11	14	8.9999
((.	chr5:54720530-54720803(+)$1	1	17	20	8.9999
..(	chr1:226107526-226107829(-)$1	1	12	15	8.9999
(((	chr6:160199837-160200115(-)$1	1	3	6	8.9999
(((	chr2:63834000-63834276(+)$1	1	6	9	8.9999
(((	chr2:114715123-114715430(+)$1	1	12	15	8.9999
)))	chr1:156278756-156279025(-)$1	1	64	67	8.9999
...	chr17:38328077-38328380(+)$1	1	145	148	8.9999
...	chr6:49572919-49573165(-)$1	1	15	18	8.9999
...	chr17:47490515-47490754(-)$1	1	17	20	8.9999
...	chr11:2152652-2153021(-)$1	1	58	61	8.9999
(((	chr12:21788290-21788506(-)$1	1	9	12	8.9999
)))	chr2:84650636-84650954(-)$1	1	54	57	8.9999
(.(	chr10:73576391-73576613(-)$1	1	100	103	8.9999
.))	chr6:44221404-44221617(+)$1	1	69	72	8.9999
(..	chr3:49135329-49135588(-)$1	1	159	162	8.9999
(..	chr3:128996360-128996566(+)$1	1	8	11	8.9999
)).	chr11:14526504-14526728(-)$1	1	30	33	8.9999
...	chr17:62496127-62496403(-)$1	1	51	54	8.9999
)))	chr5:70952893-70953226(+)$1	1	68	71	8.9999
)))	chr1:154951537-154951749(+)$1	1	115	118	8.9999
(((	chr20:34291514-34291776(-)$1	1	42	45	8.9999
.((	chr12:22218364-22218654(+)$1	1	91	94	8.9999
(((	chrX:16862985-16863239(-)$1	1	16	19	8.9999
...	chr12:98995263-98995476(+)$1	1	15	18	8.9999
)..	chr7:158526489-158526766(-)$1	1	42	45	8.9999
...	chr2:198351586-198351838(-)$1	1	0	3	8.9999
...	chr9:138774566-138774814(-)$1	1	17	20	8.9999
)..	chr12:69995091-69995380(+)$1	1	66	69	8.9999
)).	chr11:18428819-18429031(+)$1	1	130	133	8.9999
))(	chr4:104027146-104027473(-)$1	1	139	142	8.9999
)))	chr1:8045021-8045357(+)$1	1	30	33	8.9999
...	chr1:160966002-160966274(-)$1	1	44	47	8.9999
...	chr20:32868292-32868504(-)$1	1	79	82	8.9999
(((	chr16:89629586-89629817(+)$1	1	41	44	8.9999
(((	chr13:29252090-29252402(+)$1	1	18	21	8.9999
)).	chrX:154005736-154005999(+)$1	1	53	56	8.9999
(((	chr10:71962796-71963038(-)$1	1	61	64	8.9999
...	chr5:95131211-95131454(+)$1	1	42	45	8.9999
)..	chr17:74730240-74730502(-)$1	1	152	155	8.9999
)))	chr2:63834132-63834411(+)$1	1	22	25	8.9999
...	chr18:43669510-43669798(-)$1	1	5	8	8.9999
)))	chr14:101201151-101201486(+)$1	1	30	33	8.9999
(((	chr2:65495814-65496064(+)$1	1	6	9	8.9999
((.	chr8:11696274-11696532(+)$1	1	2	5	8.9999
.((	chr4:48862854-48863119(+)$1	1	137	140	8.9999
(((	chr11:32608522-32608791(+)$1	1	58	61	8.9999
)))	chr6:26204758-26205026(+)$1	1	38	41	8.9999
(((	chr17:40463241-40463514(+)$1	1	11	14	8.9999
(((	chr12:67706637-67706919(+)$1	1	20	23	8.9999
)).	chr7:127732102-127732392(+)$1	1	134	137	8.9999
.((	chr17:79477323-79477573(-)$1	1	20	23	8.9999
.))	chr17:16284334-16284558(+)$1	1	210	213	8.9999
..(	chr1:203838979-203839201(+)$1	1	80	83	8.9999
(..	chr16:2821225-2821455(+)$1	1	25	28	8.9999
(((	chr14:70238506-70238764(+)$1	1	25	28	8.9999
..(	chr6:53132354-53132597(-)$1	1	0	3	8.9999
.((	chr22:24967867-24968158(+)$1	1	28	31	8.9999
(((	chr11:2152467-2152736(-)$1	1	101	104	8.9999
(((	chr14:92583744-92584087(-)$1	1	10	13	8.9999
(((	chr6:31785513-31785771(+)$1	1	46	49	8.9999
(((	chr16:23592259-23592521(-)$1	1	5	8	8.9999
((.	chr11:764799-765068(+)$1	1	13	16	8.9999

#PSSM
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	
A : 0.96	a : 0.03	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_transcript_m2_run1.nuc.txt

#NT
UGUGUCU	chr11:9450252-9450474(+)$1	222	21	28	14.1034
ugugugu	chr17:70549693-70549949(-)$1	256	13	20	18.7586
AGUGUGU	chr1:28160905-28161108(+)$1	203	128	135	14.2758
UGUAUGU	chr2:86362998-86363208(+)$1	210	50	57	14.3620
ugugugu	chr8:38627479-38627762(+)$1	283	82	89	18.7586
uuugugu	chr15:40342661-40342992(+)$1	331	269	276	14.9655
UGUGUGU	chr2:234184495-234184705(+)$1	210	28	35	18.7586
ugggugu	chr10:74885781-74885992(-)$1	211	187	194	14.2758
UGGGUGU	chr13:27829443-27829650(+)$1	207	184	191	14.2758
UGUGUGU	chr12:6619394-6619601(+)$1	207	97	104	18.7586
UGUGUUU	chr20:37076624-37076828(+)$1	204	182	189	14.1896
UUugugu	chr19:941677-941933(+)$1	256	86	93	14.9655
UGUAUGU	chr2:86363008-86363228(+)$1	220	40	47	14.3620
ugugugu	chr6:167343791-167344115(-)$1	324	5	12	18.7586
ugugugu	chr17:79143708-79144105(+)$1	397	8	15	18.7586
ugugugu	chr17:7010693-7010960(-)$1	267	8	15	18.7586
UGUGUGU	chr2:234184440-234184651(+)$1	211	83	90	18.7586
ugugugu	chr20:61589041-61589294(+)$1	253	3	10	18.7586
ugugugu	chr17:70549984-70550286(-)$1	302	1	8	18.7586
UCUGUGU	chr9:139621157-139621362(-)$1	205	72	79	14.6206
UCUGUGU	chr9:139621143-139621356(-)$1	213	66	73	14.6206
ugugugu	chr5:856778-856995(-)$1	217	41	48	18.7586
UGUGGGU	chr11:2984966-2985171(-)$1	205	185	192	14.4482
UGUGUGU	chr1:3238005-3238234(+)$1	229	37	44	18.7586
ugugugu	chr19:18881617-18881930(+)$1	313	109	116	18.7586
UGUGGGU	chr20:2635650-2635861(+)$1	211	27	34	14.4482
UUUGUGU	chr5:111497099-111497321(+)$1	222	86	93	14.9655
UGUGUGU	chr2:234184451-234184667(+)$1	216	72	79	18.7586
AGUGUGU	chr16:2012293-2012498(-)$1	205	63	70	14.2758
UGUGUUU	chr20:37076668-37076874(+)$1	206	138	145	14.1896
UUUGUGU	chr5:111497165-111497374(+)$1	209	20	27	14.9655
ugugugu	chr6:1738119-1738376(-)$1	257	7	14	18.7586
uguaugu	chr16:29281593-29281861(+)$1	268	216	223	14.3620
ugugugu	chr16:81583404-81583681(+)$1	277	33	40	18.7586
UGUGAGU	chr2:129050362-129050600(-)$1	238	160	167	14.3620
ugugugu	chr16:81660000-81660379(+)$1	379	23	30	18.7586
UGUGGGU	chr20:2635667-2635882(+)$1	215	10	17	14.4482
UGUUUGU	chr15:25322139-25322375(+)$1	236	194	201	14.1896
ugugugu	chr20:61589217-61589488(+)$1	271	2	9	18.7586
ugugugu	chr1:23718744-23719003(-)$1	259	54	61	18.7586
ugugugu	chr7:158055326-158055654(-)$1	328	20	27	18.7586
ugugugu	chr4:881210-881466(-)$1	256	157	164	18.7586
ugugugu	chr17:7016835-7017092(-)$1	257	19	26	18.7586
uuugugu	chr7:157612948-157613303(-)$1	355	144	151	14.9655
ugugugu	chr7:47514011-47514305(-)$1	294	5	12	18.7586
UGUGUGU	chr2:234184415-234184623(+)$1	208	108	115	18.7586
UGGGUGU	chr16:2012941-2013147(-)$1	206	194	201	14.2758
UGUGAGU	chr9:136216864-136217076(+)$1	212	197	204	14.3620
UGUGUGU	chr16:81660253-81660494(+)$1	241	23	30	18.7586
ugugugu	chr21:45395006-45395294(+)$1	288	232	239	18.7586
UUUGUGU	chr11:93465482-93465698(-)$1	216	172	179	14.9655
ugugugu	chr7:98479380-98479588(+)$1	208	0	7	18.7586
ugugugu	chr10:105596109-105596375(-)$1	266	27	34	18.7586
UGUGUGU	chr17:62223640-62223844(+)$1	204	41	48	18.7586
AGUGUGU	chr8:56986319-56986552(-)$1	233	223	230	14.2758
ugugugu	chr17:7079540-7079806(-)$1	266	4	11	18.7586
ugugugu	chr10:129059991-129060239(+)$1	248	4	11	18.7586

#otherMatches

#Struct PSSM
f[dddd"	chr2:234184405-234184612(+)$1	207	118	125	18.7586
hhsssss	chr11:9450252-9450474(+)$1	222	21	28	14.1034
mmmhhhh	chr17:70549693-70549949(-)$1	256	13	20	18.7586
eeedddd	chr1:28160905-28161108(+)$1	203	128	135	14.2758
eeee[ii	chr2:86362998-86363208(+)$1	210	50	57	14.3620
fffff::	chr8:38627479-38627762(+)$1	283	82	89	18.7586
:::::::	chr15:40342661-40342992(+)$1	331	269	276	14.9655
g[dddd"	chr2:234184495-234184705(+)$1	210	28	35	18.7586
hhhhhhh	chr10:74885781-74885992(-)$1	211	187	194	14.2758
nnnnnii	chr13:27829443-27829650(+)$1	207	184	191	14.2758
eeeeegg	chr12:6619394-6619601(+)$1	207	97	104	18.7586
EEEYYGG	chr20:37076624-37076828(+)$1	204	182	189	14.1896
c[cccmm	chr19:941677-941933(+)$1	256	86	93	14.9655
eeee[ii	chr2:86363008-86363228(+)$1	220	40	47	14.3620
nnnnnee	chr6:167343791-167344115(-)$1	324	5	12	18.7586
:::::::	chr17:79143708-79144105(+)$1	397	8	15	18.7586
H::::::	chr17:7010693-7010960(-)$1	267	8	15	18.7586
f[dddd"	chr2:234184440-234184651(+)$1	211	83	90	18.7586
{AIIIII	chr20:61589041-61589294(+)$1	253	3	10	18.7586
:::JJJJ	chr17:70549984-70550286(-)$1	302	1	8	18.7586
]ddddcc	chr9:139621157-139621362(-)$1	205	72	79	14.6206
]ddddcc	chr9:139621143-139621356(-)$1	213	66	73	14.6206
^^^^^^^	chr5:856778-856995(-)$1	217	41	48	18.7586
GG}DDDD	chr11:2984966-2985171(-)$1	205	185	192	14.4482
=====]c	chr1:3238005-3238234(+)$1	229	37	44	18.7586
JJJJJJJ	chr19:18881617-18881930(+)$1	313	109	116	18.7586
ggggg!!	chr20:2635650-2635861(+)$1	211	27	34	14.4482
gggggg:	chr5:111497099-111497321(+)$1	222	86	93	14.9655
g[dddd"	chr2:234184451-234184667(+)$1	216	72	79	18.7586
DDDDIII	chr16:2012293-2012498(-)$1	205	63	70	14.2758
cc[a"""	chr20:37076668-37076874(+)$1	206	138	145	14.1896
fff[bb!	chr5:111497165-111497374(+)$1	209	20	27	14.9655
JJJJJJJ	chr6:1738119-1738376(-)$1	257	7	14	18.7586
=======	chr16:29281593-29281861(+)$1	268	216	223	14.3620
CC{CCC{	chr16:81583404-81583681(+)$1	277	33	40	18.7586
ffbb444	chr2:129050362-129050600(-)$1	238	160	167	14.3620
b::::::	chr16:81660000-81660379(+)$1	379	23	30	18.7586
ggggg!!	chr20:2635667-2635882(+)$1	215	10	17	14.4482
ooooeee	chr15:25322139-25322375(+)$1	236	194	201	14.1896
:::JJJJ	chr20:61589217-61589488(+)$1	271	2	9	18.7586
LFFFFFF	chr1:23718744-23719003(-)$1	259	54	61	18.7586
::::::d	chr7:158055326-158055654(-)$1	328	20	27	18.7586
fffffcc	chr4:881210-881466(-)$1	256	157	164	18.7586
ppppp==	chr17:7016835-7017092(-)$1	257	19	26	18.7586
CCC}A}J	chr7:157612948-157613303(-)$1	355	144	151	14.9655
:::::::	chr7:47514011-47514305(-)$1	294	5	12	18.7586
f[dddd"	chr2:234184415-234184623(+)$1	208	108	115	18.7586
EEEEE::	chr16:2012941-2013147(-)$1	206	194	201	14.2758
||||||G	chr9:136216864-136217076(+)$1	212	197	204	14.3620
eeeeerr	chr16:81660253-81660494(+)$1	241	23	30	18.7586
=====ll	chr21:45395006-45395294(+)$1	288	232	239	18.7586
DZZZDDD	chr11:93465482-93465698(-)$1	216	172	179	14.9655
CCCEEEE	chr7:98479380-98479588(+)$1	208	0	7	18.7586
e]a6666	chr10:105596109-105596375(-)$1	266	27	34	18.7586
::::GGG	chr17:62223640-62223844(+)$1	204	41	48	18.7586
iiiiiii	chr8:56986319-56986552(-)$1	233	223	230	14.2758
:::::::	chr17:7079540-7079806(-)$1	266	4	11	18.7586
[======	chr10:129059991-129060239(+)$1	248	4	11	18.7586

#DB
(.((((.	chr2:234184405-234184612(+)$1	1	118	125	18.7586
((.....	chr11:9450252-9450474(+)$1	1	21	28	14.1034
...))))	chr17:70549693-70549949(-)$1	1	13	20	18.7586
(((((((	chr1:28160905-28161108(+)$1	1	128	135	14.2758
((((.((	chr2:86362998-86363208(+)$1	1	50	57	14.3620
)))))..	chr8:38627479-38627762(+)$1	1	82	89	18.7586
.......	chr15:40342661-40342992(+)$1	1	269	276	14.9655
(.((((.	chr2:234184495-234184705(+)$1	1	28	35	18.7586
)))))))	chr10:74885781-74885992(-)$1	1	187	194	14.2758
.....))	chr13:27829443-27829650(+)$1	1	184	191	14.2758
)))))))	chr12:6619394-6619601(+)$1	1	97	104	18.7586
)))..))	chr20:37076624-37076828(+)$1	1	182	189	14.1896
(.(((..	chr19:941677-941933(+)$1	1	86	93	14.9655
((((.((	chr2:86363008-86363228(+)$1	1	40	47	14.3620
.....))	chr6:167343791-167344115(-)$1	1	5	12	18.7586
.......	chr17:79143708-79144105(+)$1	1	8	15	18.7586
(......	chr17:7010693-7010960(-)$1	1	8	15	18.7586
(.((((.	chr2:234184440-234184651(+)$1	1	83	90	18.7586
.((((((	chr20:61589041-61589294(+)$1	1	3	10	18.7586
...((((	chr17:70549984-70550286(-)$1	1	1	8	18.7586
.))))))	chr9:139621157-139621362(-)$1	1	72	79	14.6206
.))))))	chr9:139621143-139621356(-)$1	1	66	73	14.6206
.......	chr5:856778-856995(-)$1	1	41	48	18.7586
)).))))	chr11:2984966-2985171(-)$1	1	185	192	14.4482
))))).)	chr1:3238005-3238234(+)$1	1	37	44	18.7586
(((((((	chr19:18881617-18881930(+)$1	1	109	116	18.7586
(((((..	chr20:2635650-2635861(+)$1	1	27	34	14.4482
)))))).	chr5:111497099-111497321(+)$1	1	86	93	14.9655
(.((((.	chr2:234184451-234184667(+)$1	1	72	79	18.7586
(((((((	chr16:2012293-2012498(-)$1	1	63	70	14.2758
((.(...	chr20:37076668-37076874(+)$1	1	138	145	14.1896
(((.((.	chr5:111497165-111497374(+)$1	1	20	27	14.9655
(((((((	chr6:1738119-1738376(-)$1	1	7	14	18.7586
)))))))	chr16:29281593-29281861(+)$1	1	216	223	14.3620
((.(((.	chr16:81583404-81583681(+)$1	1	33	40	18.7586
))))...	chr2:129050362-129050600(-)$1	1	160	167	14.3620
)......	chr16:81660000-81660379(+)$1	1	23	30	18.7586
(((((..	chr20:2635667-2635882(+)$1	1	10	17	14.4482
....)))	chr15:25322139-25322375(+)$1	1	194	201	14.1896
...((((	chr20:61589217-61589488(+)$1	1	2	9	18.7586
.((((((	chr1:23718744-23719003(-)$1	1	54	61	18.7586
......(	chr7:158055326-158055654(-)$1	1	20	27	18.7586
)))))((	chr4:881210-881466(-)$1	1	157	164	18.7586
.....))	chr17:7016835-7017092(-)$1	1	19	26	18.7586
))).).)	chr7:157612948-157613303(-)$1	1	144	151	14.9655
.......	chr7:47514011-47514305(-)$1	1	5	12	18.7586
(.((((.	chr2:234184415-234184623(+)$1	1	108	115	18.7586
)))))..	chr16:2012941-2013147(-)$1	1	194	201	14.2758
......)	chr9:136216864-136217076(+)$1	1	197	204	14.3620
(((((..	chr16:81660253-81660494(+)$1	1	23	30	18.7586
(((((..	chr21:45395006-45395294(+)$1	1	232	239	18.7586
)...)))	chr11:93465482-93465698(-)$1	1	172	179	14.9655
(((((((	chr7:98479380-98479588(+)$1	1	0	7	18.7586
).)....	chr10:105596109-105596375(-)$1	1	27	34	18.7586
....(((	chr17:62223640-62223844(+)$1	1	41	48	18.7586
)))))))	chr8:56986319-56986552(-)$1	1	223	230	14.2758
.......	chr17:7079540-7079806(-)$1	1	4	11	18.7586
.((((((	chr10:129059991-129060239(+)$1	1	4	11	18.7586

#PSSM
U : 0.48	u : 0.46	A : 0.05	
G : 0.43	g : 0.43	U : 0.06	u : 0.03	C : 0.03	
U : 0.48	u : 0.46	G : 0.03	g : 0.01	
G : 0.46	g : 0.46	A : 0.03	a : 0.01	U : 0.01	
u : 0.48	U : 0.43	G : 0.05	A : 0.03	
g : 0.48	G : 0.46	U : 0.03	C : 0.01	
U : 0.51	u : 0.48	

#score	976.7931034482746
#seq	58
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_transcript_m3_run1.nuc.txt

#NT
ccA	chr7:77166718-77166990(+)$1	272	114	117	8.9999
CCA	chr2:128180520-128180764(+)$1	244	96	99	8.9999
CCA	chr16:457353-457644(+)$1	291	7	10	8.9999
CCA	chr8:121819125-121819379(-)$1	254	30	33	8.9999
CCA	chr6:138745222-138745583(-)$1	361	28	31	8.9999
CCA	chr8:129044390-129044701(+)$1	311	48	51	8.9999
cca	chr7:2171947-2172287(-)$1	340	80	83	8.9999
CCA	chr20:62374163-62374432(+)$1	269	11	14	8.9999
CCA	chr19:959591-959884(+)$1	293	99	102	8.9999
CCA	chr7:158342352-158342645(-)$1	293	4	7	8.9999
CCA	chr16:565469-565737(+)$1	268	4	7	8.9999
CCA	chr22:24025816-24026070(-)$1	254	12	15	8.9999
CCA	chr1:94063415-94063668(+)$1	253	2	5	8.9999
CCA	chr8:145579718-145579975(-)$1	257	6	9	8.9999
CCA	chr20:2820860-2821126(-)$1	266	55	58	8.9999
CCA	chr7:72934747-72935002(-)$1	255	47	50	8.9999
CCA	chr11:71724217-71724493(-)$1	276	28	31	8.9999
CCA	chr21:16436954-16437212(-)$1	258	73	76	8.9999
CCA	chr3:99567745-99568043(-)$1	298	73	76	8.9999
CCA	chr11:14521142-14521444(-)$1	302	29	32	8.9999
CCA	chr6:52133787-52134067(-)$1	280	49	52	8.9999
CCA	chr4:1227661-1227938(-)$1	277	27	30	8.9999
CCA	chr7:158349477-158349743(-)$1	266	85	88	8.9999
CCA	chr19:1274299-1274542(+)$1	243	21	24	8.9999
CCA	chr1:2125078-2125387(-)$1	309	1	4	8.9999
CCA	chr2:61405877-61406193(+)$1	316	1	4	8.9999
CCA	chr18:3597696-3597978(+)$1	282	25	28	8.9999
CCA	chr17:75398819-75399075(+)$1	256	28	31	8.9999
CCA	chr14:70238176-70238445(+)$1	269	47	50	8.9999
CCA	chr14:39735782-39736034(+)$1	252	3	6	8.9999
CCA	chr1:150192900-150193164(-)$1	264	13	16	8.9999
CCA	chr4:1227124-1227417(-)$1	293	5	8	8.9999
cca	chr3:82337187-82337520(+)$1	333	63	66	8.9999
CCA	chr17:45037169-45037463(+)$1	294	23	26	8.9999
cca	chr17:78777556-78777884(+)$1	328	25	28	8.9999
CCA	chr18:20827142-20827441(+)$1	299	30	33	8.9999
CCA	chr21:9921775-9922027(-)$1	252	4	7	8.9999
CCA	chr3:184098397-184098683(+)$1	286	60	63	8.9999
CCA	chr2:27593044-27593302(-)$1	258	28	31	8.9999
CCA	chr14:34931174-34931440(-)$1	266	80	83	8.9999
CCA	chr17:28804697-28805025(+)$1	328	150	153	8.9999
cca	chr7:2008054-2008380(-)$1	326	59	62	8.9999
CCA	chr12:26985932-26986192(-)$1	260	1	4	8.9999
CCA	chr17:70588300-70588631(-)$1	331	43	46	8.9999
CCA	chr1:94063325-94063557(+)$1	232	31	34	8.9999
CCA	chr16:52580569-52580815(-)$1	246	69	72	8.9999
CCA	chr4:1229637-1229942(-)$1	305	30	33	8.9999
CCA	chr16:2570668-2570942(+)$1	274	82	85	8.9999
CCA	chr16:24805804-24806066(+)$1	262	2	5	8.9999
CCA	chr16:89463533-89463842(-)$1	309	15	18	8.9999
CCA	chr18:55997915-55998230(+)$1	315	32	35	8.9999
CCA	chr13:113497782-113498060(+)$1	278	44	47	8.9999
CCA	chr4:124319265-124319549(+)$1	284	24	27	8.9999
cca	chr16:67177924-67178206(+)$1	282	3	6	8.9999
CCA	chr20:3869933-3870211(+)$1	278	30	33	8.9999
CCA	chr5:176951951-176952255(-)$1	304	63	66	8.9999
cca	chr19:35513090-35513349(+)$1	259	89	92	8.9999
CCA	chr3:56716851-56717134(-)$1	283	45	48	8.9999
cca	chr2:3476733-3476986(+)$1	253	15	18	8.9999
CCA	chr16:24802721-24802990(+)$1	269	17	20	8.9999
cca	chr16:2819786-2820018(+)$1	232	12	15	8.9999
CCA	chr7:158213246-158213542(-)$1	296	33	36	8.9999
CCA	chr17:53371888-53372151(+)$1	263	90	93	8.9999
CCA	chr3:13386315-13386563(-)$1	248	44	47	8.9999
CCA	chr21:9908942-9909196(-)$1	254	4	7	8.9999
CCA	chr22:45723845-45724092(+)$1	247	1	4	8.9999
CCA	chr15:76551948-76552205(-)$1	257	105	108	8.9999
CCA	chr9:117030129-117030408(+)$1	279	23	26	8.9999
CCA	chr7:29252424-29252702(+)$1	278	14	17	8.9999
cca	chr14:23777936-23778229(+)$1	293	23	26	8.9999
CCA	chr21:9912404-9912680(-)$1	276	20	23	8.9999
CCA	chr8:94746584-94746916(-)$1	332	3	6	8.9999
CCA	chr6:33239892-33240148(+)$1	256	2	5	8.9999
CCA	chr4:83347514-83347719(-)$1	205	195	198	8.9999
CCA	chr17:75454936-75455209(+)$1	273	33	36	8.9999
CCA	chr7:158349281-158349530(-)$1	249	173	176	8.9999
CCA	chr3:126170847-126171145(-)$1	298	7	10	8.9999
CCA	chr21:46194565-46194823(-)$1	258	103	106	8.9999
CCA	chr5:177658682-177658954(-)$1	272	10	13	8.9999
CCA	chr15:99320669-99320942(+)$1	273	74	77	8.9999
CCA	chr2:238488377-238488638(-)$1	261	18	21	8.9999
CCA	chr17:27075949-27076270(+)$1	321	6	9	8.9999
CCA	chr6:117923173-117923507(-)$1	334	54	57	8.9999
CCA	chr17:40271488-40271693(-)$1	205	79	82	8.9999
CCA	chr19:942713-942969(+)$1	256	1	4	8.9999
CCA	chr21:46918749-46919024(+)$1	275	136	139	8.9999
CCA	chr16:70714028-70714309(-)$1	281	113	116	8.9999
CCA	chr14:24108989-24109201(+)$1	212	92	95	8.9999
CCA	chr21:9922288-9922539(-)$1	251	8	11	8.9999
CCA	chr18:55712208-55712430(+)$1	222	41	44	8.9999
CCA	chr8:145979019-145979284(-)$1	265	32	35	8.9999
CCA	chr20:34302118-34302345(-)$1	227	53	56	8.9999
CCA	chr14:23528288-23528517(-)$1	229	96	99	8.9999
CCA	chr16:68265771-68266090(-)$1	319	1	4	8.9999
CCA	chr17:79966335-79966583(+)$1	248	10	13	8.9999
cca	chr8:121795825-121796111(-)$1	286	77	80	8.9999

#otherMatches

#Struct PSSM
FFF	chr9:117008781-117009073(+)$1	292	10	13	8.9999
cc]	chr7:77166718-77166990(+)$1	272	114	117	8.9999
eee	chr2:128180520-128180764(+)$1	244	96	99	8.9999
GGG	chr16:457353-457644(+)$1	291	7	10	8.9999
mff	chr8:121819125-121819379(-)$1	254	30	33	8.9999
BB:	chr6:138745222-138745583(-)$1	361	28	31	8.9999
d::	chr8:129044390-129044701(+)$1	311	48	51	8.9999
EEE	chr7:2171947-2172287(-)$1	340	80	83	8.9999
:::	chr20:62374163-62374432(+)$1	269	11	14	8.9999
eee	chr19:959591-959884(+)$1	293	99	102	8.9999
HHH	chr7:158342352-158342645(-)$1	293	4	7	8.9999
eem	chr16:565469-565737(+)$1	268	4	7	8.9999
OOC	chr22:24025816-24026070(-)$1	254	12	15	8.9999
HHH	chr1:94063415-94063668(+)$1	253	2	5	8.9999
eee	chr8:145579718-145579975(-)$1	257	6	9	8.9999
666	chr20:2820860-2821126(-)$1	266	55	58	8.9999
ccc	chr7:72934747-72935002(-)$1	255	47	50	8.9999
B{D	chr11:71724217-71724493(-)$1	276	28	31	8.9999
C::	chr21:16436954-16437212(-)$1	258	73	76	8.9999
ecc	chr3:99567745-99568043(-)$1	298	73	76	8.9999
HHH	chr11:14521142-14521444(-)$1	302	29	32	8.9999
fff	chr6:52133787-52134067(-)$1	280	49	52	8.9999
GGG	chr4:1227661-1227938(-)$1	277	27	30	8.9999
BKK	chr7:158349477-158349743(-)$1	266	85	88	8.9999
{II	chr19:1274299-1274542(+)$1	243	21	24	8.9999
EEE	chr1:2125078-2125387(-)$1	309	1	4	8.9999
CCh	chr2:61405877-61406193(+)$1	316	1	4	8.9999
eee	chr18:3597696-3597978(+)$1	282	25	28	8.9999
bb[	chr17:75398819-75399075(+)$1	256	28	31	8.9999
ddd	chr14:70238176-70238445(+)$1	269	47	50	8.9999
:::	chr14:39735782-39736034(+)$1	252	3	6	8.9999
cc:	chr1:150192900-150193164(-)$1	264	13	16	8.9999
!!e	chr4:1227124-1227417(-)$1	293	5	8	8.9999
fff	chr3:82337187-82337520(+)$1	333	63	66	8.9999
dd#	chr17:45037169-45037463(+)$1	294	23	26	8.9999
EEE	chr17:78777556-78777884(+)$1	328	25	28	8.9999
III	chr18:20827142-20827441(+)$1	299	30	33	8.9999
fff	chr21:9921775-9922027(-)$1	252	4	7	8.9999
nnn	chr3:184098397-184098683(+)$1	286	60	63	8.9999
!dd	chr2:27593044-27593302(-)$1	258	28	31	8.9999
fff	chr14:34931174-34931440(-)$1	266	80	83	8.9999
dd]	chr17:28804697-28805025(+)$1	328	150	153	8.9999
ddd	chr7:2008054-2008380(-)$1	326	59	62	8.9999
ccl	chr12:26985932-26986192(-)$1	260	1	4	8.9999
ddd	chr17:70588300-70588631(-)$1	331	43	46	8.9999
ccc	chr1:94063325-94063557(+)$1	232	31	34	8.9999
ddd	chr16:52580569-52580815(-)$1	246	69	72	8.9999
ddd	chr4:1229637-1229942(-)$1	305	30	33	8.9999
ff:	chr16:2570668-2570942(+)$1	274	82	85	8.9999
ccm	chr16:24805804-24806066(+)$1	262	2	5	8.9999
QQQ	chr16:89463533-89463842(-)$1	309	15	18	8.9999
h:B	chr18:55997915-55998230(+)$1	315	32	35	8.9999
ddd	chr13:113497782-113498060(+)$1	278	44	47	8.9999
{A{	chr4:124319265-124319549(+)$1	284	24	27	8.9999
::H	chr16:67177924-67178206(+)$1	282	3	6	8.9999
III	chr20:3869933-3870211(+)$1	278	30	33	8.9999
c""	chr5:176951951-176952255(-)$1	304	63	66	8.9999
b::	chr19:35513090-35513349(+)$1	259	89	92	8.9999
aa[	chr3:56716851-56717134(-)$1	283	45	48	8.9999
mmm	chr2:3476733-3476986(+)$1	253	15	18	8.9999
cc:	chr16:24802721-24802990(+)$1	269	17	20	8.9999
:::	chr16:2819786-2820018(+)$1	232	12	15	8.9999
FFK	chr7:158213246-158213542(-)$1	296	33	36	8.9999
===	chr17:53371888-53372151(+)$1	263	90	93	8.9999
CCC	chr3:13386315-13386563(-)$1	248	44	47	8.9999
ccc	chr21:9908942-9909196(-)$1	254	4	7	8.9999
CC{	chr22:45723845-45724092(+)$1	247	1	4	8.9999
ttt	chr15:76551948-76552205(-)$1	257	105	108	8.9999
:::	chr9:117030129-117030408(+)$1	279	23	26	8.9999
eee	chr7:29252424-29252702(+)$1	278	14	17	8.9999
DDD	chr14:23777936-23778229(+)$1	293	23	26	8.9999
ee:	chr21:9912404-9912680(-)$1	276	20	23	8.9999
B{D	chr8:94746584-94746916(-)$1	332	3	6	8.9999
:::	chr6:33239892-33240148(+)$1	256	2	5	8.9999
:::	chr4:83347514-83347719(-)$1	205	195	198	8.9999
33i	chr17:75454936-75455209(+)$1	273	33	36	8.9999
"dd	chr7:158349281-158349530(-)$1	249	173	176	8.9999
JJJ	chr3:126170847-126171145(-)$1	298	7	10	8.9999
CCC	chr21:46194565-46194823(-)$1	258	103	106	8.9999
{BB	chr5:177658682-177658954(-)$1	272	10	13	8.9999
cco	chr15:99320669-99320942(+)$1	273	74	77	8.9999
:::	chr2:238488377-238488638(-)$1	261	18	21	8.9999
eee	chr17:27075949-27076270(+)$1	321	6	9	8.9999
###	chr6:117923173-117923507(-)$1	334	54	57	8.9999
epp	chr17:40271488-40271693(-)$1	205	79	82	8.9999
:::	chr19:942713-942969(+)$1	256	1	4	8.9999
ffq	chr21:46918749-46919024(+)$1	275	136	139	8.9999
=""	chr16:70714028-70714309(-)$1	281	113	116	8.9999
eee	chr14:24108989-24109201(+)$1	212	92	95	8.9999
f[c	chr21:9922288-9922539(-)$1	251	8	11	8.9999
FFF	chr18:55712208-55712430(+)$1	222	41	44	8.9999
III	chr8:145979019-145979284(-)$1	265	32	35	8.9999
eee	chr20:34302118-34302345(-)$1	227	53	56	8.9999
bb:	chr14:23528288-23528517(-)$1	229	96	99	8.9999
:::	chr16:68265771-68266090(-)$1	319	1	4	8.9999
ff!	chr17:79966335-79966583(+)$1	248	10	13	8.9999
eef	chr8:121795825-121796111(-)$1	286	77	80	8.9999

#DB
(((	chr9:117008781-117009073(+)$1	1	10	13	8.9999
)).	chr7:77166718-77166990(+)$1	1	114	117	8.9999
(((	chr2:128180520-128180764(+)$1	1	96	99	8.9999
(((	chr16:457353-457644(+)$1	1	7	10	8.9999
.))	chr8:121819125-121819379(-)$1	1	30	33	8.9999
((.	chr6:138745222-138745583(-)$1	1	28	31	8.9999
)..	chr8:129044390-129044701(+)$1	1	48	51	8.9999
)))	chr7:2171947-2172287(-)$1	1	80	83	8.9999
...	chr20:62374163-62374432(+)$1	1	11	14	8.9999
(((	chr19:959591-959884(+)$1	1	99	102	8.9999
(((	chr7:158342352-158342645(-)$1	1	4	7	8.9999
((.	chr16:565469-565737(+)$1	1	4	7	8.9999
..(	chr22:24025816-24026070(-)$1	1	12	15	8.9999
(((	chr1:94063415-94063668(+)$1	1	2	5	8.9999
(((	chr8:145579718-145579975(-)$1	1	6	9	8.9999
...	chr20:2820860-2821126(-)$1	1	55	58	8.9999
(((	chr7:72934747-72935002(-)$1	1	47	50	8.9999
(.(	chr11:71724217-71724493(-)$1	1	28	31	8.9999
(..	chr21:16436954-16437212(-)$1	1	73	76	8.9999
)))	chr3:99567745-99568043(-)$1	1	73	76	8.9999
(((	chr11:14521142-14521444(-)$1	1	29	32	8.9999
(((	chr6:52133787-52134067(-)$1	1	49	52	8.9999
(((	chr4:1227661-1227938(-)$1	1	27	30	8.9999
(..	chr7:158349477-158349743(-)$1	1	85	88	8.9999
.((	chr19:1274299-1274542(+)$1	1	21	24	8.9999
(((	chr1:2125078-2125387(-)$1	1	1	4	8.9999
(((	chr2:61405877-61406193(+)$1	1	1	4	8.9999
(((	chr18:3597696-3597978(+)$1	1	25	28	8.9999
((.	chr17:75398819-75399075(+)$1	1	28	31	8.9999
(((	chr14:70238176-70238445(+)$1	1	47	50	8.9999
...	chr14:39735782-39736034(+)$1	1	3	6	8.9999
)).	chr1:150192900-150193164(-)$1	1	13	16	8.9999
..(	chr4:1227124-1227417(-)$1	1	5	8	8.9999
)))	chr3:82337187-82337520(+)$1	1	63	66	8.9999
((.	chr17:45037169-45037463(+)$1	1	23	26	8.9999
(((	chr17:78777556-78777884(+)$1	1	25	28	8.9999
(((	chr18:20827142-20827441(+)$1	1	30	33	8.9999
(((	chr21:9921775-9922027(-)$1	1	4	7	8.9999
...	chr3:184098397-184098683(+)$1	1	60	63	8.9999
.((	chr2:27593044-27593302(-)$1	1	28	31	8.9999
(((	chr14:34931174-34931440(-)$1	1	80	83	8.9999
)).	chr17:28804697-28805025(+)$1	1	150	153	8.9999
)))	chr7:2008054-2008380(-)$1	1	59	62	8.9999
((.	chr12:26985932-26986192(-)$1	1	1	4	8.9999
(((	chr17:70588300-70588631(-)$1	1	43	46	8.9999
(((	chr1:94063325-94063557(+)$1	1	31	34	8.9999
(((	chr16:52580569-52580815(-)$1	1	69	72	8.9999
(((	chr4:1229637-1229942(-)$1	1	30	33	8.9999
)).	chr16:2570668-2570942(+)$1	1	82	85	8.9999
((.	chr16:24805804-24806066(+)$1	1	2	5	8.9999
...	chr16:89463533-89463842(-)$1	1	15	18	8.9999
).(	chr18:55997915-55998230(+)$1	1	32	35	8.9999
(((	chr13:113497782-113498060(+)$1	1	44	47	8.9999
.(.	chr4:124319265-124319549(+)$1	1	24	27	8.9999
..(	chr16:67177924-67178206(+)$1	1	3	6	8.9999
(((	chr20:3869933-3870211(+)$1	1	30	33	8.9999
(..	chr5:176951951-176952255(-)$1	1	63	66	8.9999
)..	chr19:35513090-35513349(+)$1	1	89	92	8.9999
((.	chr3:56716851-56717134(-)$1	1	45	48	8.9999
...	chr2:3476733-3476986(+)$1	1	15	18	8.9999
)).	chr16:24802721-24802990(+)$1	1	17	20	8.9999
...	chr16:2819786-2820018(+)$1	1	12	15	8.9999
((.	chr7:158213246-158213542(-)$1	1	33	36	8.9999
(((	chr17:53371888-53372151(+)$1	1	90	93	8.9999
(((	chr3:13386315-13386563(-)$1	1	44	47	8.9999
(((	chr21:9908942-9909196(-)$1	1	4	7	8.9999
((.	chr22:45723845-45724092(+)$1	1	1	4	8.9999
...	chr15:76551948-76552205(-)$1	1	105	108	8.9999
...	chr9:117030129-117030408(+)$1	1	23	26	8.9999
(((	chr7:29252424-29252702(+)$1	1	14	17	8.9999
(((	chr14:23777936-23778229(+)$1	1	23	26	8.9999
)).	chr21:9912404-9912680(-)$1	1	20	23	8.9999
(.(	chr8:94746584-94746916(-)$1	1	3	6	8.9999
...	chr6:33239892-33240148(+)$1	1	2	5	8.9999
...	chr4:83347514-83347719(-)$1	1	195	198	8.9999
..)	chr17:75454936-75455209(+)$1	1	33	36	8.9999
.((	chr7:158349281-158349530(-)$1	1	173	176	8.9999
(((	chr3:126170847-126171145(-)$1	1	7	10	8.9999
(((	chr21:46194565-46194823(-)$1	1	103	106	8.9999
.((	chr5:177658682-177658954(-)$1	1	10	13	8.9999
((.	chr15:99320669-99320942(+)$1	1	74	77	8.9999
...	chr2:238488377-238488638(-)$1	1	18	21	8.9999
(((	chr17:27075949-27076270(+)$1	1	6	9	8.9999
...	chr6:117923173-117923507(-)$1	1	54	57	8.9999
(..	chr17:40271488-40271693(-)$1	1	79	82	8.9999
...	chr19:942713-942969(+)$1	1	1	4	8.9999
((.	chr21:46918749-46919024(+)$1	1	136	139	8.9999
(..	chr16:70714028-70714309(-)$1	1	113	116	8.9999
(((	chr14:24108989-24109201(+)$1	1	92	95	8.9999
(.(	chr21:9922288-9922539(-)$1	1	8	11	8.9999
(((	chr18:55712208-55712430(+)$1	1	41	44	8.9999
(((	chr8:145979019-145979284(-)$1	1	32	35	8.9999
(((	chr20:34302118-34302345(-)$1	1	53	56	8.9999
)).	chr14:23528288-23528517(-)$1	1	96	99	8.9999
...	chr16:68265771-68266090(-)$1	1	1	4	8.9999
((.	chr17:79966335-79966583(+)$1	1	10	13	8.9999
(((	chr8:121795825-121796111(-)$1	1	77	80	8.9999

#PSSM
C : 0.88	c : 0.11	
C : 0.88	c : 0.11	
A : 0.89	a : 0.10	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_transcript_m2_run2.nuc.txt

#NT
AGGGCAGGGGG	chr7:2674540-2674789(+)$1	249	81	92	17.8181
UGGGGAGGGUU	chr1:3468066-3468332(-)$1	266	86	97	16.4545
GGGAGAGGGGC	chr13:113380630-113380881(+)$1	251	39	50	17.4545
gggggaggagg	chrX:132922546-132922817(-)$1	271	34	45	18.2727
UGGGGAGGGGA	chr13:41202453-41202725(-)$1	272	89	100	21.7272
uggggaggggg	chr21:47563054-47563304(-)$1	250	15	26	22.2727
UGGGGCGGGGC	chr8:144677791-144678029(-)$1	238	181	192	16.5454
CGGGGGGGGGG	chr17:80190707-80190978(+)$1	271	86	97	16.1818
AGGGGAGGGGC	chr16:50637930-50638155(+)$1	225	51	62	21.0000
GGGGGACGGGG	chr17:79966166-79966448(+)$1	282	94	105	18.6363
GGGGCAGGGGU	chr2:10310504-10310815(+)$1	311	86	97	17.4545
AGGGAAGGGGG	chr11:70675973-70676245(-)$1	272	81	92	17.8181
UGAGGAGGGGC	chr11:65197269-65197479(+)$1	210	54	65	17.8181
GGGGGAGGGAU	chr7:26239011-26239256(-)$1	245	2	13	16.9090
UGGGGAGGAGC	chr16:75284026-75284272(-)$1	246	110	121	16.8181
UGGggaaggga	chr7:79081759-79082013(-)$1	254	10	21	17.8181
uggggagaggg	chr7:128217704-128218017(+)$1	313	54	65	17.7272
AGGGAAGGGGA	chr11:65193461-65193693(+)$1	232	31	42	17.2727
gggggaugggg	chr17:75464952-75465210(+)$1	258	90	101	19.0000
GGGGGAGGGGA	chr17:63555178-63555487(-)$1	309	243	254	22.1818
ggaggaggggu	chr2:118867944-118868244(+)$1	300	80	91	18.1818
UGAGGAGGGGG	chr17:70484061-70484328(-)$1	267	40	51	18.8181
UGGGGAUGGGA	chr17:75374539-75374797(+)$1	258	109	120	18.0000
gggggaugggg	chr2:102335005-102335240(+)$1	235	53	64	19.0000
AGGUGAGGGGA	chr17:70548960-70549215(-)$1	255	121	132	17.0000
UGGGGAGUGGG	chr16:8958688-8958932(-)$1	244	107	118	17.9090
GGGGGAGGGGG	chr11:65211550-65211764(+)$1	214	83	94	22.7272
UGGAGAGGGGC	chr2:129068336-129068582(-)$1	246	109	120	17.0000
GGUGGAGGGGG	chr11:65190342-65190558(+)$1	216	182	193	18.7272
GGAGGAGGGGA	chr6:7108016-7108272(+)$1	256	118	129	18.7272
AGAGGAGGGGU	chr19:45599870-45600171(+)$1	301	45	56	17.4545
GUGGGAGGGGA	chr22:29413973-29414219(+)$1	246	87	98	18.0000
GGGGGAUGGGU	chr16:81515116-81515346(+)$1	230	82	93	17.9090
GGCGGAGGGGC	chr2:101436975-101437230(+)$1	255	5	16	17.8181
CGGGGAGGGGA	chr8:17658249-17658521(-)$1	272	45	56	20.3636
AGGGAAGGGGA	chr11:65193453-65193661(+)$1	208	39	50	17.2727
AGGGGAAGGGG	chr2:242755391-242755673(+)$1	282	38	49	18.0909
GGAGGAGGGGG	chr3:113464003-113464275(-)$1	272	37	48	19.2727
UGGAGAGGGGG	chr17:75372093-75372353(+)$1	260	185	196	18.0000
AGGGGAGGGGC	chr16:50637857-50638117(+)$1	260	124	135	21.0000
UGGGGAGGGGA	chr18:77675144-77675416(-)$1	272	86	97	21.7272
GUGGGAGGGGG	chr17:79884536-79884815(-)$1	279	80	91	18.5454
UGGGGAGGGGA	chr11:782550-782879(+)$1	329	232	243	21.7272
UUGGGAGGGGG	chrX:132899744-132899967(-)$1	223	25	36	18.0909
aggggagugga	chr9:14843077-14843363(-)$1	286	55	66	17.0909
gggggaggagg	chr16:81581138-81581396(+)$1	258	76	87	18.2727
GUGGGAGGGGU	chr19:39140342-39140593(+)$1	251	210	221	17.4545
AGGGGAAGGGU	chr20:62668315-62668546(+)$1	231	62	73	17.0000
UGGGCAGGGGC	chr16:73080919-73081187(-)$1	268	52	63	17.0909
AGAGGAGGGGA	chr16:81526381-81526637(+)$1	256	11	22	18.0000
AGCGGAGGGGC	chr11:819914-820180(+)$1	266	63	74	17.0909
aggggaugggg	chr17:17731292-17731580(-)$1	288	107	118	18.2727
GAGGGAGGGGA	chr4:1238110-1238370(-)$1	260	34	45	17.7272
GGGCGAGGGGG	chr20:46130693-46130967(+)$1	274	100	111	18.2727

#otherMatches

#Struct PSSM
KKFFFFFFKKC	chr11:2158447-2158681(-)$1	234	65	76	17.2727
ddccc"""eee	chr7:2674540-2674789(+)$1	249	81	92	17.8181
eeeee]ggggg	chr1:3468066-3468332(-)$1	266	86	97	16.4545
FF:::::hhhh	chr13:113380630-113380881(+)$1	251	39	50	17.4545
:::::::::::	chrX:132922546-132922817(-)$1	271	34	45	18.2727
e]a::::::::	chr13:41202453-41202725(-)$1	272	89	100	21.7272
EEEEE::AKKG	chr21:47563054-47563304(-)$1	250	15	26	22.2727
b[ddddqqqqq	chr8:144677791-144678029(-)$1	238	181	192	16.5454
bb[a####hhh	chr17:80190707-80190978(+)$1	271	86	97	16.1818
dddd]bbffff	chr16:50637930-50638155(+)$1	225	51	62	21.0000
dddbb]agggg	chr17:79966166-79966448(+)$1	282	94	105	18.6363
gghhhhhhhh$	chr2:10310504-10310815(+)$1	311	86	97	17.4545
=wwwwwwwwww	chr11:70675973-70676245(-)$1	272	81	92	17.8181
hhhhhGGGGGG	chr11:65197269-65197479(+)$1	210	54	65	17.8181
A{HHHHHHHHN	chr7:26239011-26239256(-)$1	245	2	13	16.9090
c55555a]ddd	chr16:75284026-75284272(-)$1	246	110	121	16.8181
f^^^^^^^^^^	chr7:79081759-79082013(-)$1	254	10	21	17.8181
C{HHHHHHHH{	chr7:128217704-128218017(+)$1	313	54	65	17.7272
JJJJJJJJJLL	chr11:65193461-65193693(+)$1	232	31	42	17.2727
eeeee]a]ddd	chr17:75464952-75465210(+)$1	258	90	101	19.0000
dd"""dddd!!	chr17:63555178-63555487(-)$1	309	243	254	22.1818
]ccceeeee]b	chr2:118867944-118868244(+)$1	300	80	91	18.1818
g:::::::::c	chr17:70484061-70484328(-)$1	267	40	51	18.8181
hhCCC{A{EEE	chr17:75374539-75374797(+)$1	258	109	120	18.0000
gggggg[ffff	chr2:102335005-102335240(+)$1	235	53	64	19.0000
ddd]bb]eeee	chr17:70548960-70549215(-)$1	255	121	132	17.0000
:::CCCKKDDD	chr16:8958688-8958932(-)$1	244	107	118	17.9090
hhhhhhaccc[	chr11:65211550-65211764(+)$1	214	83	94	22.7272
&eeeee[eeee	chr2:129068336-129068582(-)$1	246	109	120	17.0000
mmmbbbbeeee	chr11:65190342-65190558(+)$1	216	182	193	18.7272
{HHHHHHHH::	chr6:7108016-7108272(+)$1	256	118	129	18.7272
::dddd[bb!!	chr19:45599870-45600171(+)$1	301	45	56	17.4545
]ggggggg22f	chr22:29413973-29414219(+)$1	246	87	98	18.0000
ffffffcccnn	chr16:81515116-81515346(+)$1	230	82	93	17.9090
[dddd####dd	chr2:101436975-101437230(+)$1	255	5	16	17.8181
KKGGGGGGGKK	chr8:17658249-17658521(-)$1	272	45	56	20.3636
cccHHHHHHHH	chr11:65193453-65193661(+)$1	208	39	50	17.2727
KFFFFFF:::d	chr2:242755391-242755673(+)$1	282	38	49	18.0909
EEEEECCC{BB	chr3:113464003-113464275(-)$1	272	37	48	19.2727
eee22hhhhhh	chr17:75372093-75372353(+)$1	260	185	196	18.0000
4ccc4444ggg	chr16:50637857-50638117(+)$1	260	124	135	21.0000
eeeee22ccc]	chr18:77675144-77675416(-)$1	272	86	97	21.7272
LLCCC{BBEEE	chr17:79884536-79884815(-)$1	279	80	91	18.5454
[ggggggg$$$	chr11:782550-782879(+)$1	329	232	243	21.7272
dddd22a333e	chrX:132899744-132899967(-)$1	223	25	36	18.0909
HHHHHHH{III	chr9:14843077-14843363(-)$1	286	55	66	17.0909
:::ccc"""a[	chr16:81581138-81581396(+)$1	258	76	87	18.2727
fffff[eeeee	chr19:39140342-39140593(+)$1	251	210	221	17.4545
===[a[dddd!	chr20:62668315-62668546(+)$1	231	62	73	17.0000
f&&&&&&&===	chr16:73080919-73081187(-)$1	268	52	63	17.0909
:::::::::::	chr16:81526381-81526637(+)$1	256	11	22	18.0000
mmffffff22d	chr11:819914-820180(+)$1	266	63	74	17.0909
=====%%%%%%	chr17:17731292-17731580(-)$1	288	107	118	18.2727
::CCC{DDDD{	chr4:1238110-1238370(-)$1	260	34	45	17.7272
C{BBSSSSSSS	chr20:46130693-46130967(+)$1	274	100	111	18.2727

#DB
..((((((..(	chr11:2158447-2158681(-)$1	1	65	76	17.2727
(((((...(((	chr7:2674540-2674789(+)$1	1	81	92	17.8181
))))).)))))	chr1:3468066-3468332(-)$1	1	86	97	16.4545
((.....((((	chr13:113380630-113380881(+)$1	1	39	50	17.4545
...........	chrX:132922546-132922817(-)$1	1	34	45	18.2727
).)........	chr13:41202453-41202725(-)$1	1	89	100	21.7272
(((((..(..(	chr21:47563054-47563304(-)$1	1	15	26	22.2727
(.((((.....	chr8:144677791-144678029(-)$1	1	181	192	16.5454
((.(....(((	chr17:80190707-80190978(+)$1	1	86	97	16.1818
)))).))))))	chr16:50637930-50638155(+)$1	1	51	62	21.0000
))))).)))))	chr17:79966166-79966448(+)$1	1	94	105	18.6363
))((((((((.	chr2:10310504-10310815(+)$1	1	86	97	17.4545
(..........	chr11:70675973-70676245(-)$1	1	81	92	17.8181
)))))((((((	chr11:65197269-65197479(+)$1	1	54	65	17.8181
(.((((((((.	chr7:26239011-26239256(-)$1	1	2	13	16.9090
).....).)))	chr16:75284026-75284272(-)$1	1	110	121	16.8181
(..........	chr7:79081759-79082013(-)$1	1	10	21	17.8181
(.((((((((.	chr7:128217704-128218017(+)$1	1	54	65	17.7272
(((((((((..	chr11:65193461-65193693(+)$1	1	31	42	17.2727
))))).).)))	chr17:75464952-75465210(+)$1	1	90	101	19.0000
((...((((..	chr17:63555178-63555487(-)$1	1	243	254	22.1818
.)))))))).)	chr2:118867944-118868244(+)$1	1	80	91	18.1818
).........(	chr17:70484061-70484328(-)$1	1	40	51	18.8181
))(((.(.(((	chr17:75374539-75374797(+)$1	1	109	120	18.0000
((((((.((((	chr2:102335005-102335240(+)$1	1	53	64	19.0000
))).)).))))	chr17:70548960-70549215(-)$1	1	121	132	17.0000
...(((..(((	chr16:8958688-8958932(-)$1	1	107	118	17.9090
((((((((((.	chr11:65211550-65211764(+)$1	1	83	94	22.7272
.(((((.((((	chr2:129068336-129068582(-)$1	1	109	120	17.0000
...))))))))	chr11:65190342-65190558(+)$1	1	182	193	18.7272
.((((((((..	chr6:7108016-7108272(+)$1	1	118	129	18.7272
..((((.((..	chr19:45599870-45600171(+)$1	1	45	56	17.4545
.)))))))..)	chr22:29413973-29414219(+)$1	1	87	98	18.0000
(((((((((..	chr16:81515116-81515346(+)$1	1	82	93	17.9090
.((((....((	chr2:101436975-101437230(+)$1	1	5	16	17.8181
..(((((((..	chr8:17658249-17658521(-)$1	1	45	56	20.3636
)))((((((((	chr11:65193453-65193661(+)$1	1	39	50	17.2727
.((((((...(	chr2:242755391-242755673(+)$1	1	38	49	18.0909
((((((((.((	chr3:113464003-113464275(-)$1	1	37	48	19.2727
)))..))))))	chr17:75372093-75372353(+)$1	1	185	196	18.0000
.)))....)))	chr16:50637857-50638117(+)$1	1	124	135	21.0000
)))))..))).	chr18:77675144-77675416(-)$1	1	86	97	21.7272
..(((.(((((	chr17:79884536-79884815(-)$1	1	80	91	18.5454
.(((((((...	chr11:782550-782879(+)$1	1	232	243	21.7272
))))..)...)	chrX:132899744-132899967(-)$1	1	25	36	18.0909
(((((((.(((	chr9:14843077-14843363(-)$1	1	55	66	17.0909
...(((...(.	chr16:81581138-81581396(+)$1	1	76	87	18.2727
(((((.(((((	chr19:39140342-39140593(+)$1	1	210	221	17.4545
(((.(.((((.	chr20:62668315-62668546(+)$1	1	62	73	17.0000
(.......(((	chr16:73080919-73081187(-)$1	1	52	63	17.0909
...........	chr16:81526381-81526637(+)$1	1	11	22	18.0000
..))))))..)	chr11:819914-820180(+)$1	1	63	74	17.0909
(((((......	chr17:17731292-17731580(-)$1	1	107	118	18.2727
..(((.((((.	chr4:1238110-1238370(-)$1	1	34	45	17.7272
(.((.......	chr20:46130693-46130967(+)$1	1	100	111	18.2727

#PSSM
G : 0.30	U : 0.27	A : 0.21	g : 0.09	u : 0.03	C : 0.03	a : 0.03	
G : 0.74	g : 0.16	U : 0.07	A : 0.01	
G : 0.67	g : 0.14	A : 0.10	C : 0.03	a : 0.01	U : 0.01	
G : 0.72	g : 0.18	A : 0.05	U : 0.01	C : 0.01	
G : 0.70	g : 0.18	C : 0.05	A : 0.05	
A : 0.78	a : 0.18	C : 0.01	G : 0.01	
G : 0.72	g : 0.10	u : 0.05	U : 0.03	A : 0.03	C : 0.01	a : 0.01	
G : 0.78	g : 0.14	U : 0.03	a : 0.01	u : 0.01	
G : 0.80	g : 0.14	a : 0.03	A : 0.01	
G : 0.78	g : 0.18	U : 0.01	A : 0.01	
G : 0.25	A : 0.23	C : 0.18	U : 0.14	g : 0.12	a : 0.03	u : 0.01	

#score	1012.0909090909096
#seq	55
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_CDS_m3_run2.nuc.txt

#NT
GAAGUCGCUCAGGAAGUCGACAAGAUGGUAGAAGACGAAGUGGGAAUAGAAAUCGAUCAAGAAGUGGGGGCCACAAACGGAGUUUUGACUGAGUAUUUGAUAGUUAAUCUACCAGUGUGAGCUUGCCUAUUUCUGCCUAAUCAUGUACAUUAUCCACCAAAAAUUAGGUCAUCAUAGUUGAGGUAUGUGUCUGCUAUUUGCAAAGAAGUUGGUCGUAUUUUUUUAAAAAGUAUUUCACAAGAAUGGAACAAAUCUACUUAUCCAGUUAUACCUUUGAAUAAAAAAACCUCCU	chr10:70706281-70706604(+)$1	323	13	305	406.0000

#otherMatches

#Struct PSSM
MMMEEEEE{BBLLLDDDD:ffffffssssssssssffffffbb[bb[ccc%%%%%%dddd[bboooooobbdddd88888888ccc]bb]bb:eeeee!!ffffff[dddd!!bboooooobb333dddd22ffffff]eeeeecccmmmmccc:::::::::::::::::::::::hhhhhhhh[cccmmmmccchhhhhhhh:::::::DDDD}BBEEEEE}FFFFFF}DDDDYYDDDD:::::::eeeee&&&&&&&dddd[ddddmmmmdddd]dddd55555eeeee	chr3:129155416-129155733(-)$1	317	22	314	406.0000
oooddddccc::::::::::::JJJJJJJJJJJJ:::::eeeeeccc####bb[ccc!!iiiiiiiiicccdddd"""bbbb!!ggggggg[ammmma22ggggggg]bb]bb22dddd]ccc22iiiiiiiii55555cccbb4444ccc]eeeee::::::::DDDDSSSSSSSSSSHHHHHHHH::::cccnnnnnccc::::::ccca!!hhhhhhhhlllhhhhhhhh22a]ccc:::ddddvvvvvvvvvvvvvdddd::HHHHHHHH@@@@@@@@@@@DDDD}JJ	chr10:70706281-70706604(+)$1	323	13	305	406.0000

#DB
...(((((.((...((((.((((((..........))))))((.((.(((......((((.((......))))))........))).)).)).(((((..((((((.((((..((......))...))))..)))))).)))))(((....))).......................((((((((.(((....))))))))))).......)))).))))))).)))))).))))..)))).......(((((.......((((.((((....)))).)))).....)))))	chr3:129155416-129155733(-)$1	1	22	314	406.0000
...)))))))............((((((((((((.....((((((((....((.(((..((((((((((((((((...((((..(((((((.(....)..))))))).)).))..)))).)))..))))))))).....)))))....))).)))))........((((..........((((((((....(((.....)))......((((..((((((((...))))))))..).)))...((((.............))))..))))))))...........)))).))	chr10:70706281-70706604(+)$1	1	13	305	406.0000

#PSSM
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
A : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	

#score	812.0
#seq	2
#width	292
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_UTR_m3_run1.nuc.txt

#NT
cagc	chr7:1006198-1006484(-)$1	286	20	24	12.0000
CAGC	chr7:1887656-1887908(-)$1	252	36	40	12.0000
CAGC	chr16:87736083-87736342(-)$1	259	12	16	12.0000
CAGC	chr7:1888838-1889078(-)$1	240	0	4	12.0000
CAGC	chr16:87733212-87733515(-)$1	303	8	12	12.0000
CAGC	chr12:124809040-124809363(-)$1	323	42	46	12.0000
CAGC	chr16:89348127-89348411(-)$1	284	204	208	12.0000
CAGC	chr9:134350659-134350947(+)$1	288	147	151	12.0000
CAGC	chr16:89346585-89346860(-)$1	275	108	112	12.0000
CAGC	chr16:89348867-89349114(-)$1	247	64	68	12.0000
CAGC	chr14:105713567-105713827(-)$1	260	180	184	12.0000
CAGC	chr7:1131212-1131475(-)$1	263	125	129	12.0000
CAGC	chr1:144931745-144931962(-)$1	217	8	12	12.0000
CAGC	chr10:71075446-71075713(+)$1	267	27	31	12.0000
CAGC	chr7:1132622-1132891(-)$1	269	78	82	12.0000
CAGC	chr19:55558594-55558900(+)$1	306	209	213	12.0000
CAGC	chr16:89350802-89351075(-)$1	273	69	73	12.0000
CAGC	chr16:89349833-89350150(-)$1	317	214	218	12.0000
CAGC	chr5:71490506-71490752(+)$1	246	105	109	12.0000
CAGC	chr8:94752685-94752943(-)$1	258	16	20	12.0000
CAGC	chr16:89350039-89350291(-)$1	252	14	18	12.0000
CAGC	chr7:100730254-100730506(+)$1	252	126	130	12.0000
CAGC	chr16:89347434-89347678(-)$1	244	53	57	12.0000
CAGC	chr16:89347152-89347422(-)$1	270	221	225	12.0000
CAGC	chr8:94752885-94753182(-)$1	297	37	41	12.0000
CAGC	chrX:153592597-153592830(-)$1	233	46	50	12.0000
cagc	chr4:1228556-1228826(-)$1	270	1	5	12.0000
cagc	chr22:50013845-50014161(-)$1	316	164	168	12.0000
CAGC	chr16:89347086-89347350(-)$1	264	149	153	12.0000
CAGC	chr16:89347358-89347609(-)$1	251	68	72	12.0000
CAGC	chr22:20050697-20050991(+)$1	294	164	168	12.0000
CAGC	chr7:1887361-1887627(-)$1	266	77	81	12.0000
CAGC	chr7:1133231-1133471(-)$1	240	65	69	12.0000
CAGC	chr9:134351607-134351899(+)$1	292	48	52	12.0000
CAGC	chr17:20799309-20799614(+)$1	305	57	61	12.0000
CAGC	chr19:2270320-2270598(+)$1	278	218	222	12.0000
cagc	chr20:25843563-25843811(-)$1	248	69	73	12.0000
CAGC	chr16:87734510-87734761(-)$1	251	67	71	12.0000
CAGC	chr19:11172458-11172716(+)$1	258	18	22	12.0000
CAGC	chr1:144932076-144932361(-)$1	285	183	187	12.0000
CAGC	chr9:134350836-134351116(+)$1	280	243	247	12.0000
CAGC	chr16:89348258-89348499(-)$1	241	73	77	12.0000
CAGC	chr16:89350307-89350602(-)$1	295	161	165	12.0000
CAGC	chr16:89346985-89347212(-)$1	227	11	15	12.0000
CAGC	chr9:139560096-139560352(+)$1	256	8	12	12.0000
CAGC	chr22:21801092-21801341(+)$1	249	12	16	12.0000
CAGC	chr4:1230108-1230372(-)$1	264	117	121	12.0000
CAGC	chr4:1229566-1229800(-)$1	234	63	67	12.0000
CAGC	chr16:87735153-87735409(-)$1	256	215	219	12.0000
CAGC	chr16:89346897-89347146(-)$1	249	13	17	12.0000
CAGC	chr9:134349890-134350156(+)$1	266	2	6	12.0000
cagc	chr19:39138284-39138537(+)$1	253	8	12	12.0000
CAGC	chr19:13264606-13264852(+)$1	246	23	27	12.0000
CAGC	chr16:89349416-89349667(-)$1	251	101	105	12.0000
CAGC	chr8:94753045-94753286(-)$1	241	141	145	12.0000
cagc	chr14:105714222-105714487(-)$1	265	100	104	12.0000
CAGC	chr7:1887475-1887711(-)$1	236	7	11	12.0000
CAGC	chr4:1229196-1229413(-)$1	217	17	21	12.0000
CAGC	chr7:1132490-1132768(-)$1	278	112	116	12.0000

#otherMatches

#Struct PSSM
EEEE	chr16:87733377-87733640(-)$1	263	23	27	12.0000
d:CC	chr7:1006198-1006484(-)$1	286	20	24	12.0000
cccf	chr7:1887656-1887908(-)$1	252	36	40	12.0000
GG{B	chr16:87736083-87736342(-)$1	259	12	16	12.0000
:ddd	chr7:1888838-1889078(-)$1	240	0	4	12.0000
ccce	chr16:87733212-87733515(-)$1	303	8	12	12.0000
hhhh	chr12:124809040-124809363(-)$1	323	42	46	12.0000
dddd	chr16:89348127-89348411(-)$1	284	204	208	12.0000
a22d	chr9:134350659-134350947(+)$1	288	147	151	12.0000
::bb	chr16:89346585-89346860(-)$1	275	108	112	12.0000
c333	chr16:89348867-89349114(-)$1	247	64	68	12.0000
nnnc	chr14:105713567-105713827(-)$1	260	180	184	12.0000
====	chr7:1131212-1131475(-)$1	263	125	129	12.0000
EEEE	chr1:144931745-144931962(-)$1	217	8	12	12.0000
ttee	chr10:71075446-71075713(+)$1	267	27	31	12.0000
bb]b	chr7:1132622-1132891(-)$1	269	78	82	12.0000
d:BB	chr19:55558594-55558900(+)$1	306	209	213	12.0000
eeee	chr16:89350802-89351075(-)$1	273	69	73	12.0000
b!!a	chr16:89349833-89350150(-)$1	317	214	218	12.0000
DDMM	chr5:71490506-71490752(+)$1	246	105	109	12.0000
DKKC	chr8:94752685-94752943(-)$1	258	16	20	12.0000
oocc	chr16:89350039-89350291(-)$1	252	14	18	12.0000
nnnf	chr7:100730254-100730506(+)$1	252	126	130	12.0000
::cc	chr16:89347434-89347678(-)$1	244	53	57	12.0000
????	chr16:89347152-89347422(-)$1	270	221	225	12.0000
hhhh	chr8:94752885-94753182(-)$1	297	37	41	12.0000
ddHH	chrX:153592597-153592830(-)$1	233	46	50	12.0000
cc[a	chr4:1228556-1228826(-)$1	270	1	5	12.0000
bb33	chr22:50013845-50014161(-)$1	316	164	168	12.0000
CCCY	chr16:89347086-89347350(-)$1	264	149	153	12.0000
%%dd	chr16:89347358-89347609(-)$1	251	68	72	12.0000
cmmm	chr22:20050697-20050991(+)$1	294	164	168	12.0000
ffff	chr7:1887361-1887627(-)$1	266	77	81	12.0000
ffff	chr7:1133231-1133471(-)$1	240	65	69	12.0000
ccc[	chr9:134351607-134351899(+)$1	292	48	52	12.0000
!!ee	chr17:20799309-20799614(+)$1	305	57	61	12.0000
oooo	chr19:2270320-2270598(+)$1	278	218	222	12.0000
BB{A	chr20:25843563-25843811(-)$1	248	69	73	12.0000
::bb	chr16:87734510-87734761(-)$1	251	67	71	12.0000
::::	chr19:11172458-11172716(+)$1	258	18	22	12.0000
eedd	chr1:144932076-144932361(-)$1	285	183	187	12.0000
__GG	chr9:134350836-134351116(+)$1	280	243	247	12.0000
"ccc	chr16:89348258-89348499(-)$1	241	73	77	12.0000
ennn	chr16:89350307-89350602(-)$1	295	161	165	12.0000
CC{E	chr16:89346985-89347212(-)$1	227	11	15	12.0000
LLLG	chr9:139560096-139560352(+)$1	256	8	12	12.0000
C:::	chr22:21801092-21801341(+)$1	249	12	16	12.0000
E:bb	chr4:1230108-1230372(-)$1	264	117	121	12.0000
pppp	chr4:1229566-1229800(-)$1	234	63	67	12.0000
eeem	chr16:87735153-87735409(-)$1	256	215	219	12.0000
NNEE	chr16:89346897-89347146(-)$1	249	13	17	12.0000
::::	chr9:134349890-134350156(+)$1	266	2	6	12.0000
b[dd	chr19:39138284-39138537(+)$1	253	8	12	12.0000
a[bb	chr19:13264606-13264852(+)$1	246	23	27	12.0000
""cc	chr16:89349416-89349667(-)$1	251	101	105	12.0000
hhhh	chr8:94753045-94753286(-)$1	241	141	145	12.0000
oocc	chr14:105714222-105714487(-)$1	265	100	104	12.0000
GGGG	chr7:1887475-1887711(-)$1	236	7	11	12.0000
b22d	chr4:1229196-1229413(-)$1	217	17	21	12.0000
DDD}	chr7:1132490-1132768(-)$1	278	112	116	12.0000

#DB
((((	chr16:87733377-87733640(-)$1	1	23	27	12.0000
).((	chr7:1006198-1006484(-)$1	1	20	24	12.0000
((((	chr7:1887656-1887908(-)$1	1	36	40	12.0000
((.(	chr16:87736083-87736342(-)$1	1	12	16	12.0000
.(((	chr7:1888838-1889078(-)$1	1	0	4	12.0000
((((	chr16:87733212-87733515(-)$1	1	8	12	12.0000
))))	chr12:124809040-124809363(-)$1	1	42	46	12.0000
((((	chr16:89348127-89348411(-)$1	1	204	208	12.0000
)..)	chr9:134350659-134350947(+)$1	1	147	151	12.0000
..((	chr16:89346585-89346860(-)$1	1	108	112	12.0000
)...	chr16:89348867-89349114(-)$1	1	64	68	12.0000
...)	chr14:105713567-105713827(-)$1	1	180	184	12.0000
))))	chr7:1131212-1131475(-)$1	1	125	129	12.0000
((((	chr1:144931745-144931962(-)$1	1	8	12	12.0000
..))	chr10:71075446-71075713(+)$1	1	27	31	12.0000
)).)	chr7:1132622-1132891(-)$1	1	78	82	12.0000
).))	chr19:55558594-55558900(+)$1	1	209	213	12.0000
((((	chr16:89350802-89351075(-)$1	1	69	73	12.0000
(..(	chr16:89349833-89350150(-)$1	1	214	218	12.0000
((..	chr5:71490506-71490752(+)$1	1	105	109	12.0000
(..(	chr8:94752685-94752943(-)$1	1	16	20	12.0000
..))	chr16:89350039-89350291(-)$1	1	14	18	12.0000
...)	chr7:100730254-100730506(+)$1	1	126	130	12.0000
..((	chr16:89347434-89347678(-)$1	1	53	57	12.0000
....	chr16:89347152-89347422(-)$1	1	221	225	12.0000
))))	chr8:94752885-94753182(-)$1	1	37	41	12.0000
))((	chrX:153592597-153592830(-)$1	1	46	50	12.0000
((.(	chr4:1228556-1228826(-)$1	1	1	5	12.0000
))..	chr22:50013845-50014161(-)$1	1	164	168	12.0000
))).	chr16:89347086-89347350(-)$1	1	149	153	12.0000
..((	chr16:89347358-89347609(-)$1	1	68	72	12.0000
(...	chr22:20050697-20050991(+)$1	1	164	168	12.0000
))))	chr7:1887361-1887627(-)$1	1	77	81	12.0000
))))	chr7:1133231-1133471(-)$1	1	65	69	12.0000
(((.	chr9:134351607-134351899(+)$1	1	48	52	12.0000
..((	chr17:20799309-20799614(+)$1	1	57	61	12.0000
....	chr19:2270320-2270598(+)$1	1	218	222	12.0000
((.(	chr20:25843563-25843811(-)$1	1	69	73	12.0000
..((	chr16:87734510-87734761(-)$1	1	67	71	12.0000
....	chr19:11172458-11172716(+)$1	1	18	22	12.0000
((((	chr1:144932076-144932361(-)$1	1	183	187	12.0000
..))	chr9:134350836-134351116(+)$1	1	243	247	12.0000
.(((	chr16:89348258-89348499(-)$1	1	73	77	12.0000
(...	chr16:89350307-89350602(-)$1	1	161	165	12.0000
((.(	chr16:89346985-89347212(-)$1	1	11	15	12.0000
...(	chr9:139560096-139560352(+)$1	1	8	12	12.0000
(...	chr22:21801092-21801341(+)$1	1	12	16	12.0000
(.((	chr4:1230108-1230372(-)$1	1	117	121	12.0000
....	chr4:1229566-1229800(-)$1	1	63	67	12.0000
(((.	chr16:87735153-87735409(-)$1	1	215	219	12.0000
..((	chr16:89346897-89347146(-)$1	1	13	17	12.0000
....	chr9:134349890-134350156(+)$1	1	2	6	12.0000
(.((	chr19:39138284-39138537(+)$1	1	8	12	12.0000
(.((	chr19:13264606-13264852(+)$1	1	23	27	12.0000
..((	chr16:89349416-89349667(-)$1	1	101	105	12.0000
))))	chr8:94753045-94753286(-)$1	1	141	145	12.0000
..))	chr14:105714222-105714487(-)$1	1	100	104	12.0000
((((	chr7:1887475-1887711(-)$1	1	7	11	12.0000
)..)	chr4:1229196-1229413(-)$1	1	17	21	12.0000
))).	chr7:1132490-1132768(-)$1	1	112	116	12.0000

#PSSM
C : 0.90	c : 0.09	
A : 0.90	a : 0.09	
G : 0.90	g : 0.09	
C : 0.90	c : 0.09	

#score	720.0000000000002
#seq	60
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_UTR_m1_run1.nuc.txt

#NT
GGCCGUGGCCGGGGC	chr9:134350717-134351007(+)$1	290	117	132	18.9830
GGCGGGUGAGGGGUC	chr17:80190022-80190254(+)$1	232	208	223	19.1525
GGGGUGGGCGGAGGU	chr16:1827054-1827309(+)$1	255	94	109	18.2203
GGAGGGCGCGGGCGG	chr6:1312808-1313077(+)$1	269	190	205	18.3050
GGUGGCGGAGGGGGC	chr20:57467309-57467621(+)$1	312	150	165	20.4237
GGCGGGCGCCUGGGC	chr19:13263725-13264008(+)$1	283	128	143	17.6271
GGCGGCGGCGGGGUG	chr7:1177513-1177828(-)$1	315	16	31	22.8813
ggccggggccggggc	chr15:43662878-43663210(-)$1	332	11	26	22.3728
GGCGGGGACAGGUGG	chr17:42255524-42255827(-)$1	303	15	30	16.8644
UGCGGGGGGAGGGGC	chr4:1194934-1195174(-)$1	240	188	203	18.6440
UGCGGGGAGGGGGGC	chr19:1206004-1206293(+)$1	289	120	135	18.6440
UGUGGGGGAGGGGGC	chr8:145013646-145013926(-)$1	280	27	42	19.7457
GGAGGAGGCGGAGGG	chr17:80109767-80110031(-)$1	264	106	121	20.4237
ggcggggcgggaggg	chr18:55711519-55711796(+)$1	277	26	41	19.3220
ggcgggugcggggCG	chr11:849872-850131(+)$1	259	110	125	22.1186
UGCCGGGGCGGGGAG	chr9:139715774-139716050(+)$1	276	85	100	18.6440
cgcgggcgcgggggc	chr14:105715205-105715474(-)$1	269	19	34	21.8644
ggaggaggcggagga	chr17:43225826-43226091(+)$1	265	118	133	19.1525
GAGGGGGGCGAGGGA	chr12:19592489-19592759(+)$1	270	66	81	16.1016
ggcggggcggggggg	chr1:27022509-27022754(+)$1	245	216	231	22.3728
GGGGAGGGCGGGGGG	chr14:32546423-32546668(+)$1	245	34	49	22.6271
ggaggaggcggagga	chr17:43225927-43226209(+)$1	282	17	32	19.1525
GGGGGUGGCGGGGUC	chr19:42758633-42758902(-)$1	269	55	70	20.5084
ggcggcggcgggggc	chr1:2160056-2160328(+)$1	272	80	95	26.3559
GGUGGGGGGUGGGGG	chr10:105361199-105361490(-)$1	291	10	25	19.7457
ggcaguggcgguggg	chr11:63883565-63883873(-)$1	308	104	119	18.3898
ggcgguggcggcggc	chr6:170123970-170124245(-)$1	275	22	37	22.8813
GCCCGGGGCCGGGGC	chr9:134350650-134350917(+)$1	267	55	70	17.6271
ggcgggggcguggcc	chr3:195622690-195622959(-)$1	269	112	127	21.8644
GGAGGGGGUGGGGAA	chr6:32939758-32939974(+)$1	216	118	133	18.6440
GGCGGGAACGCGGGC	chr6:1314084-1314323(+)$1	239	112	127	17.2033
ggcgggugagggggc	chr19:56166196-56166485(+)$1	289	88	103	22.2881
GGCGGCGGCGGGGUG	chr7:1177631-1177906(-)$1	275	94	109	22.8813
ggagggggcagaggg	chr2:242447563-242447868(-)$1	305	49	64	19.9152
ggccggggcggggcc	chr11:706040-706293(-)$1	253	124	139	22.8813
ggcgggggcgggggc	chrX:153774925-153775180(+)$1	255	166	181	29.5762
GGCGGAGCCGGGGAG	chr5:139493572-139493864(+)$1	292	99	114	19.0677
cgcgggcgcgggggc	chr14:105715428-105715730(-)$1	302	275	290	21.8644
GGCGGCGGCGGAGGG	chr12:104697462-104697747(+)$1	285	228	243	22.9661
AGCGAGGGCGGGGGU	chr22:31741630-31741912(-)$1	282	98	113	19.9152
GGUGGGGGCUGGGCU	chr2:202001724-202002101(+)$1	377	206	221	18.5593
GGUGGGGGCGGGGGG	chr17:79860493-79860770(-)$1	277	102	117	26.6949
cgcgggcgcgggggc	chr14:105715317-105715582(-)$1	265	127	142	21.8644
GGCGGGGAGGGCGGU	chr7:76255990-76256273(+)$1	283	109	124	17.7118
ggcgggGGCGGCGUG	chr9:127020433-127020709(+)$1	276	117	132	22.7966
ggcugggccgggggc	chr6:41514189-41514434(+)$1	245	97	112	22.0338
GGCCUGGGCGGAGGG	chr16:87732286-87732540(-)$1	254	130	145	18.4745
ggggcgggcggggag	chrX:20284770-20285040(-)$1	270	239	254	19.1525
ggccggggcggggcu	chr12:104697337-104697643(+)$1	306	108	123	21.3559
ggcggcggcggcggc	chr7:77166514-77166809(+)$1	295	6	21	23.0508
GGUGGGGGGUGGGGG	chr10:105361290-105361572(-)$1	282	92	107	19.7457
ggugggggcggcgac	chr2:242447501-242447763(-)$1	262	30	45	20.5084
GGGGAGGGCUGGGGU	chr4:763946-764202(-)$1	256	101	116	17.7118
GGCUGGGCUGGGGGA	chr7:148921649-148921908(+)$1	259	90	105	16.7796
ggcggaggcgguggg	chr2:200323325-200323593(-)$1	268	81	96	22.3728
AGCGAGGGCGGGGGU	chr22:31741781-31742046(-)$1	265	232	247	19.9152
ggagggagaggggga	chr10:77158319-77158575(-)$1	256	97	112	18.1355
GGGAGGGGCGGGGUC	chr16:8941585-8941855(+)$1	270	106	121	20.0000

#otherMatches

#Struct PSSM
HHHHHHHHEEEEEcc	chr19:59074102-59074382(+)$1	280	114	129	23.4745
ddddddddbb!!ddd	chr9:134350717-134351007(+)$1	290	117	132	18.9830
JJJJJJ}AYYCCCZZ	chr17:80190022-80190254(+)$1	232	208	223	19.1525
HHHH{BBOOOOOOII	chr16:1827054-1827309(+)$1	255	94	109	18.2203
d:::ffffff[bbmm	chr6:1312808-1313077(+)$1	269	190	205	18.3050
]a:ccc[a%%%%%%=	chr20:57467309-57467621(+)$1	312	150	165	20.4237
nneeeee]ccc====	chr19:13263725-13264008(+)$1	283	128	143	17.6271
b[bb[ddddoooooo	chr7:1177513-1177828(-)$1	315	16	31	22.8813
DDDDDDDNNNNNFFF	chr15:43662878-43663210(-)$1	332	11	26	22.3728
qddddcccGGGGGGG	chr17:42255524-42255827(-)$1	303	15	30	16.8644
bb]ccchhhhhhhh]	chr4:1194934-1195174(-)$1	240	188	203	18.6440
dddBB}AYYFFFFFF	chr19:1206004-1206293(+)$1	289	120	135	18.6440
f!!a[==========	chr8:145013646-145013926(-)$1	280	27	42	19.7457
GGGGGG~~~~FFFFF	chr17:80109767-80110031(-)$1	264	106	121	20.4237
E{A{FFFFFF{BBbb	chr18:55711519-55711796(+)$1	277	26	41	19.3220
BB{BB{DDDD::::d	chr11:849872-850131(+)$1	259	110	125	22.1186
==bb"""bboooooo	chr9:139715774-139716050(+)$1	276	85	100	18.6440
[bb"""eeeeellle	chr14:105715205-105715474(-)$1	269	19	34	21.8644
++++++ccc"""bb[	chr17:43225826-43226091(+)$1	265	118	133	19.1525
c[ggggggg!!ccc[	chr12:19592489-19592759(+)$1	270	66	81	16.1016
eeeee==========	chr1:27022509-27022754(+)$1	245	216	231	22.3728
eee!!a[ccc$$$$$	chr14:32546423-32546668(+)$1	245	34	49	22.6271
::::::hhhhhhhh'	chr17:43225927-43226209(+)$1	282	17	32	19.1525
iiiiiiii]dddd::	chr19:42758633-42758902(-)$1	269	55	70	20.5084
ccc:ccc[a[ccc[b	chr1:2160056-2160328(+)$1	272	80	95	26.3559
ggggg[=========	chr10:105361199-105361490(-)$1	291	10	25	19.7457
===="""bboooooo	chr11:63883565-63883873(-)$1	308	104	119	18.3898
mmmmeeeee22bb]h	chr6:170123970-170124245(-)$1	275	22	37	22.8813
eeeeeeeeeFFFFFF	chr9:134350650-134350917(+)$1	267	55	70	17.6271
ccc::ffffff[fff	chr3:195622690-195622959(-)$1	269	112	127	21.8644
bb[eeeee[dddd##	chr6:32939758-32939974(+)$1	216	118	133	18.6440
FFFFFFZZZGGGGGG	chr6:1314084-1314323(+)$1	239	112	127	17.2033
fff22bb7777777a	chr19:56166196-56166485(+)$1	289	88	103	22.2881
II{BB{DDDDdddd!	chr7:1177631-1177906(-)$1	275	94	109	22.8813
a22a]dddd::::::	chr2:242447563-242447868(-)$1	305	49	64	19.9152
ff22hhhhhhhh]ad	chr11:706040-706293(-)$1	253	124	139	22.8813
HHHYYGGGGGGG}BB	chrX:153774925-153775180(+)$1	255	166	181	29.5762
33bb]eeeeeHHHHH	chr5:139493572-139493864(+)$1	292	99	114	19.0677
HHHHH}AGGGGGGGY	chr14:105715428-105715730(-)$1	302	275	290	21.8644
pbbHHHHHHHH::::	chr12:104697462-104697747(+)$1	285	228	243	22.9661
fff!!cccdddd[cc	chr22:31741630-31741912(-)$1	282	98	113	19.9152
::::::iiiiiiiii	chr2:202001724-202002101(+)$1	377	206	221	18.5593
a[gggggggnnnnng	chr17:79860493-79860770(-)$1	277	102	117	26.6949
eee!!iiiiiiiii$	chr14:105715317-105715582(-)$1	265	127	142	21.8644
ffff####a[bbqqq	chr7:76255990-76256273(+)$1	283	109	124	17.7118
HHHHHHHH{A{JJJJ	chr9:127020433-127020709(+)$1	276	117	132	22.7966
qqdddd]eeeeeddd	chr6:41514189-41514434(+)$1	245	97	112	22.0338
ggggggiiiiiiiii	chr16:87732286-87732540(-)$1	254	130	145	18.4745
ddccc]eeeeebb]b	chrX:20284770-20285040(-)$1	270	239	254	19.1525
h22ccc]bbeeeee[	chr12:104697337-104697643(+)$1	306	108	123	21.3559
JJJJJJJJJ{IIIII	chr7:77166514-77166809(+)$1	295	6	21	23.0508
ffffff]ccchhhhh	chr10:105361290-105361572(-)$1	282	92	107	19.7457
ooa]hhhhhhhh::B	chr2:242447501-242447763(-)$1	262	30	45	20.5084
DDD{BB{DDDDEEEE	chr4:763946-764202(-)$1	256	101	116	17.7118
fffff333eeeeea]	chr7:148921649-148921908(+)$1	259	90	105	16.7796
{CCCGGGGGGGLLLE	chr2:200323325-200323593(-)$1	268	81	96	22.3728
obbEEEEE}GGGGGG	chr22:31741781-31742046(-)$1	265	232	247	19.9152
B}A}BB:::::::::	chr10:77158319-77158575(-)$1	256	97	112	18.1355
:EEEEE{A{GGGGGG	chr16:8941585-8941855(+)$1	270	106	121	20.0000

#DB
(((((((((((((((	chr19:59074102-59074382(+)$1	1	114	129	23.4745
))))((((((..(((	chr9:134350717-134351007(+)$1	1	117	132	18.9830
)))))).)..)))..	chr17:80190022-80190254(+)$1	1	208	223	19.1525
((((.((......((	chr16:1827054-1827309(+)$1	1	94	109	18.2203
)...((((((.((..	chr6:1312808-1313077(+)$1	1	190	205	18.3050
.).(((.(......(	chr20:57467309-57467621(+)$1	1	150	165	20.4237
..))))).)))((((	chr19:13263725-13264008(+)$1	1	128	143	17.6271
(.((.((((......	chr7:1177513-1177828(-)$1	1	16	31	22.8813
(((((((.....(((	chr15:43662878-43663210(-)$1	1	11	26	22.3728
.)))))))(((((((	chr17:42255524-42255827(-)$1	1	15	30	16.8644
)).))))))))))).	chr4:1194934-1195174(-)$1	1	188	203	18.6440
))))).)..))))))	chr19:1206004-1206293(+)$1	1	120	135	18.6440
(..(.((((((((((	chr8:145013646-145013926(-)$1	1	27	42	19.7457
))))))....)))))	chr17:80109767-80110031(-)$1	1	106	121	20.4237
(.(.((((((.((((	chr18:55711519-55711796(+)$1	1	26	41	19.3220
((.((.((((....(	chr11:849872-850131(+)$1	1	110	125	22.1186
((((...((......	chr9:139715774-139716050(+)$1	1	85	100	18.6440
.((...(((((...)	chr14:105715205-105715474(-)$1	1	19	34	21.8644
......(((...((.	chr17:43225826-43226091(+)$1	1	118	133	19.1525
(.(((((((..(((.	chr12:19592489-19592759(+)$1	1	66	81	16.1016
)))))))))))))))	chr1:27022509-27022754(+)$1	1	216	231	22.3728
(((..(.(((.....	chr14:32546423-32546668(+)$1	1	34	49	22.6271
......((((((((.	chr17:43225927-43226209(+)$1	1	17	32	19.1525
)))))))).))))..	chr19:42758633-42758902(-)$1	1	55	70	20.5084
))).(((.(.(((.(	chr1:2160056-2160328(+)$1	1	80	95	26.3559
(((((.(((((((((	chr10:105361199-105361490(-)$1	1	10	25	19.7457
((((...((......	chr11:63883565-63883873(-)$1	1	104	119	18.3898
....)))))..)).)	chr6:170123970-170124245(-)$1	1	22	37	22.8813
)))))))))((((((	chr9:134350650-134350917(+)$1	1	55	70	17.6271
)))..((((((.(((	chr3:195622690-195622959(-)$1	1	112	127	21.8644
((.(((((.((((..	chr6:32939758-32939974(+)$1	1	118	133	18.6440
))))))...))))))	chr6:1314084-1314323(+)$1	1	112	127	17.2033
)))..)).......)	chr19:56166196-56166485(+)$1	1	88	103	22.2881
((.((.((((((((.	chr7:1177631-1177906(-)$1	1	94	109	22.8813
)..).))))......	chr2:242447563-242447868(-)$1	1	49	64	19.9152
))..)))))))).)(	chr11:706040-706293(-)$1	1	124	139	22.8813
)))..))))))).))	chrX:153774925-153775180(+)$1	1	166	181	29.5762
..)).))))))))))	chr5:139493572-139493864(+)$1	1	99	114	19.0677
))))).)))))))).	chr14:105715428-105715730(-)$1	1	275	290	21.8644
.))))))))))....	chr12:104697462-104697747(+)$1	1	228	243	22.9661
(((..(((((((.((	chr22:31741630-31741912(-)$1	1	98	113	19.9152
......(((((((((	chr2:202001724-202002101(+)$1	1	206	221	18.5593
(.(((((((.....)	chr17:79860493-79860770(-)$1	1	102	117	26.6949
(((..(((((((((.	chr14:105715317-105715582(-)$1	1	127	142	21.8644
((((....(.((...	chr7:76255990-76256273(+)$1	1	109	124	17.7118
((((((((.(.((((	chr9:127020433-127020709(+)$1	1	117	132	22.7966
..)))).)))))(((	chr6:41514189-41514434(+)$1	1	97	112	22.0338
))))))(((((((((	chr16:87732286-87732540(-)$1	1	130	145	18.4745
))))).))))))).)	chrX:20284770-20285040(-)$1	1	239	254	19.1525
)..))).))(((((.	chr12:104697337-104697643(+)$1	1	108	123	21.3559
(((((((((.(((((	chr7:77166514-77166809(+)$1	1	6	21	23.0508
)))))).))))))))	chr10:105361290-105361572(-)$1	1	92	107	19.7457
..).))))))))..(	chr2:242447501-242447763(-)$1	1	30	45	20.5084
(((.((.((((((((	chr4:763946-764202(-)$1	1	101	116	17.7118
)))))...)))))).	chr7:148921649-148921908(+)$1	1	90	105	16.7796
.((((((((((...(	chr2:200323325-200323593(-)$1	1	81	96	22.3728
.))))))).))))))	chr22:31741781-31742046(-)$1	1	232	247	19.9152
).).)).........	chr10:77158319-77158575(-)$1	1	97	112	18.1355
.(((((.(.((((((	chr16:8941585-8941855(+)$1	1	106	121	20.0000

#PSSM
G : 0.47	g : 0.37	U : 0.06	c : 0.05	A : 0.03	
G : 0.54	g : 0.42	A : 0.01	C : 0.01	
c : 0.32	C : 0.30	G : 0.10	U : 0.10	A : 0.06	a : 0.06	g : 0.01	u : 0.01	
G : 0.47	g : 0.33	C : 0.06	c : 0.05	a : 0.01	u : 0.01	U : 0.01	A : 0.01	
G : 0.47	g : 0.40	A : 0.06	U : 0.03	c : 0.01	
G : 0.44	g : 0.30	C : 0.06	a : 0.05	U : 0.03	A : 0.03	c : 0.03	u : 0.03	
G : 0.52	g : 0.30	c : 0.05	C : 0.03	u : 0.03	U : 0.01	A : 0.01	a : 0.01	
G : 0.47	g : 0.35	A : 0.06	C : 0.05	c : 0.05	
C : 0.42	c : 0.33	G : 0.08	A : 0.05	g : 0.03	U : 0.03	a : 0.03	
G : 0.44	g : 0.37	U : 0.06	C : 0.05	A : 0.03	c : 0.01	a : 0.01	
G : 0.54	g : 0.38	U : 0.01	A : 0.01	u : 0.01	C : 0.01	
G : 0.49	g : 0.25	A : 0.06	a : 0.06	c : 0.05	u : 0.03	C : 0.03	
G : 0.55	g : 0.40	C : 0.01	U : 0.01	
G : 0.42	g : 0.30	U : 0.10	A : 0.05	c : 0.05	C : 0.03	a : 0.03	
G : 0.25	c : 0.22	C : 0.20	U : 0.10	g : 0.10	a : 0.05	A : 0.05	u : 0.01	

#score	1208.559322033898
#seq	59
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_UTR_m3_run1.nuc.txt

#NT
GGGA	chr11:64073967-64074286(+)$1	319	8	12	12.0000
GGGA	chr1:228270370-228270687(+)$1	317	54	58	12.0000
GGGA	chr1:12072316-12072650(+)$1	334	14	18	12.0000
ggga	chr19:49964767-49965078(+)$1	311	16	20	12.0000
GGGA	chr21:47610630-47610942(-)$1	312	76	80	12.0000
GGGA	chr3:197024714-197025086(-)$1	372	48	52	12.0000
GGGA	chr17:72767369-72767668(-)$1	299	67	71	12.0000
ggga	chr17:76794067-76794362(-)$1	295	75	79	12.0000
GGGA	chr16:2820956-2821282(+)$1	326	135	139	12.0000
GGGA	chr18:3451868-3452127(+)$1	259	26	30	12.0000
GGGA	chr19:41306991-41307298(+)$1	307	195	199	12.0000
GGGA	chr19:7978265-7978568(+)$1	303	22	26	12.0000
GGGA	chr19:13263743-13263999(+)$1	256	224	228	12.0000
GGGA	chr22:19431222-19431504(-)$1	282	142	146	12.0000
GGGA	chr14:21967336-21967660(-)$1	324	7	11	12.0000
ggga	chr21:47721047-47721331(-)$1	284	164	168	12.0000
GGGA	chr3:133308225-133308520(+)$1	295	43	47	12.0000
ggga	chr19:10222193-10222511(+)$1	318	107	111	12.0000
GGGA	chr5:139045243-139045539(+)$1	296	108	112	12.0000
GGGA	chr21:45564894-45565182(+)$1	288	20	24	12.0000
GGGA	chr11:2965743-2965969(-)$1	226	168	172	12.0000
GGGA	chr11:295386-295650(+)$1	264	7	11	12.0000
GGGA	chr3:186506812-186507021(+)$1	209	123	127	12.0000
GGGA	chr12:124082108-124082444(+)$1	336	237	241	12.0000
GGGA	chr6:36457025-36457340(+)$1	315	40	44	12.0000
GGGA	chr19:41882620-41882947(+)$1	327	147	151	12.0000
GGGA	chr12:109124803-109125153(-)$1	350	72	76	12.0000
ggga	chr17:76793969-76794267(-)$1	298	9	13	12.0000
GGGA	chr19:47248826-47249132(-)$1	306	4	8	12.0000
GGGA	chr22:20109977-20110226(+)$1	249	14	18	12.0000
GGGA	chr16:28848121-28848384(+)$1	263	16	20	12.0000
GGGA	chr22:21804694-21804960(+)$1	266	188	192	12.0000
GGGA	chr1:228329186-228329462(+)$1	276	189	193	12.0000
GGGA	chr10:69834719-69835009(-)$1	290	129	133	12.0000
GGGA	chr8:144678719-144678995(-)$1	276	42	46	12.0000
GGGA	chr19:1010058-1010355(-)$1	297	74	78	12.0000
GGGA	chr6:52227141-52227399(+)$1	258	19	23	12.0000
GGGA	chr3:49052691-49052968(+)$1	277	89	93	12.0000
GGGA	chr12:51566448-51566855(-)$1	407	158	162	12.0000
GGGA	chr1:23697607-23697993(+)$1	386	120	124	12.0000
GGGA	chr2:172379422-172379700(+)$1	278	11	15	12.0000
GGGA	chr20:1164594-1164857(-)$1	263	13	17	12.0000
GGGA	chr19:2270265-2270515(+)$1	250	59	63	12.0000
GGGA	chr22:50016257-50016551(-)$1	294	49	53	12.0000
GGGA	chr3:186648417-186648727(+)$1	310	48	52	12.0000
GGGA	chr7:5569352-5569582(-)$1	230	75	79	12.0000
GGGA	chr12:30907138-30907450(-)$1	312	34	38	12.0000
GGGA	chr16:1362387-1362694(+)$1	307	115	119	12.0000
GGGA	chr19:2270194-2270439(+)$1	245	2	6	12.0000
GGGA	chr7:155570978-155571262(+)$1	284	133	137	12.0000
GGGA	chr12:58216952-58217253(-)$1	301	165	169	12.0000
GGGA	chr15:93426439-93426691(+)$1	252	17	21	12.0000
GGGA	chr7:1474056-1474374(-)$1	318	283	287	12.0000
GGGA	chr11:404640-404960(+)$1	320	108	112	12.0000
ggga	chr22:50013878-50014189(-)$1	311	73	77	12.0000
GGGA	chr17:80871474-80871735(+)$1	261	83	87	12.0000
GGGA	chr12:112590603-112590925(+)$1	322	82	86	12.0000
GGGA	chr5:6599450-6599742(-)$1	292	114	118	12.0000
GGGA	chr20:1165127-1165394(-)$1	267	219	223	12.0000
GGGA	chr12:76477659-76477924(-)$1	265	23	27	12.0000
GGGA	chr19:41882291-41882631(+)$1	340	83	87	12.0000
GGGA	chr1:1336739-1337076(+)$1	337	14	18	12.0000
GGGA	chr22:20099497-20099784(-)$1	287	12	16	12.0000
GGGA	chr19:50168401-50168663(-)$1	262	1	5	12.0000
GGGA	chr1:200589528-200589859(-)$1	331	0	4	12.0000
GGGA	chr1:150532724-150532997(+)$1	273	51	55	12.0000
GGGA	chr16:89724920-89725218(+)$1	298	47	51	12.0000
GGGA	chr15:30114359-30114724(-)$1	365	121	125	12.0000
GGGA	chr22:22312061-22312320(-)$1	259	96	100	12.0000
GGGA	chr7:50860172-50860453(-)$1	281	41	45	12.0000
GGGA	chrX:151121854-151122188(-)$1	334	218	222	12.0000
GGGA	chr12:109124026-109124319(-)$1	293	34	38	12.0000
GGGA	chr11:57509549-57509823(+)$1	274	56	60	12.0000
GGGA	chr9:138902253-138902551(-)$1	298	21	25	12.0000
GGGA	chr2:196522000-196522300(+)$1	300	81	85	12.0000
GGGA	chr12:31477173-31477521(-)$1	348	31	35	12.0000
GGGA	chr4:76649854-76650118(+)$1	264	59	63	12.0000
ggga	chr19:54970357-54970621(+)$1	264	27	31	12.0000
GGGA	chr10:74034985-74035263(+)$1	278	43	47	12.0000
GGGA	chr15:64980434-64980749(-)$1	315	134	138	12.0000
GGGA	chr8:30669820-30670092(-)$1	272	31	35	12.0000
GGGA	chr6:15248982-15249302(+)$1	320	4	8	12.0000
GGGA	chr17:80231148-80231435(-)$1	287	18	22	12.0000
GGGA	chr17:7477140-7477431(+)$1	291	4	8	12.0000
GGGA	chr20:57467325-57467596(+)$1	271	6	10	12.0000

#otherMatches

#Struct PSSM
oooo	chr4:1945740-1946006(+)$1	266	36	40	12.0000
DDD{	chr11:64073967-64074286(+)$1	319	8	12	12.0000
dd22	chr1:228270370-228270687(+)$1	317	54	58	12.0000
CCCD	chr1:12072316-12072650(+)$1	334	14	18	12.0000
JJJJ	chr19:49964767-49965078(+)$1	311	16	20	12.0000
iiie	chr21:47610630-47610942(-)$1	312	76	80	12.0000
hhhh	chr3:197024714-197025086(-)$1	372	48	52	12.0000
dddd	chr17:72767369-72767668(-)$1	299	67	71	12.0000
ffff	chr17:76794067-76794362(-)$1	295	75	79	12.0000
dddd	chr16:2820956-2821282(+)$1	326	135	139	12.0000
iiii	chr18:3451868-3452127(+)$1	259	26	30	12.0000
ebbd	chr19:41306991-41307298(+)$1	307	195	199	12.0000
CCC:	chr19:7978265-7978568(+)$1	303	22	26	12.0000
DDDD	chr19:13263743-13263999(+)$1	256	224	228	12.0000
hhhh	chr22:19431222-19431504(-)$1	282	142	146	12.0000
EEEE	chr14:21967336-21967660(-)$1	324	7	11	12.0000
CCC}	chr21:47721047-47721331(-)$1	284	164	168	12.0000
c]bb	chr3:133308225-133308520(+)$1	295	43	47	12.0000
ddd3	chr19:10222193-10222511(+)$1	318	107	111	12.0000
4ccc	chr5:139045243-139045539(+)$1	296	108	112	12.0000
nccc	chr21:45564894-45565182(+)$1	288	20	24	12.0000
dDDD	chr11:2965743-2965969(-)$1	226	168	172	12.0000
BB{E	chr11:295386-295650(+)$1	264	7	11	12.0000
22ii	chr3:186506812-186507021(+)$1	209	123	127	12.0000
bb:f	chr12:124082108-124082444(+)$1	336	237	241	12.0000
GGGG	chr6:36457025-36457340(+)$1	315	40	44	12.0000
eeee	chr19:41882620-41882947(+)$1	327	147	151	12.0000
a[cc	chr12:109124803-109125153(-)$1	350	72	76	12.0000
::HH	chr17:76793969-76794267(-)$1	298	9	13	12.0000
:eee	chr19:47248826-47249132(-)$1	306	4	8	12.0000
C{A{	chr22:20109977-20110226(+)$1	249	14	18	12.0000
ffEE	chr16:28848121-28848384(+)$1	263	16	20	12.0000
eccc	chr22:21804694-21804960(+)$1	266	188	192	12.0000
f"""	chr1:228329186-228329462(+)$1	276	189	193	12.0000
FFFF	chr10:69834719-69835009(-)$1	290	129	133	12.0000
dnnn	chr8:144678719-144678995(-)$1	276	42	46	12.0000
HHHH	chr19:1010058-1010355(-)$1	297	74	78	12.0000
a]bb	chr6:52227141-52227399(+)$1	258	19	23	12.0000
xxxx	chr3:49052691-49052968(+)$1	277	89	93	12.0000
:EEE	chr12:51566448-51566855(-)$1	407	158	162	12.0000
[ccc	chr1:23697607-23697993(+)$1	386	120	124	12.0000
B{A{	chr2:172379422-172379700(+)$1	278	11	15	12.0000
gggg	chr20:1164594-1164857(-)$1	263	13	17	12.0000
mmmm	chr19:2270265-2270515(+)$1	250	59	63	12.0000
III:	chr22:50016257-50016551(-)$1	294	49	53	12.0000
nnnc	chr3:186648417-186648727(+)$1	310	48	52	12.0000
bb[=	chr7:5569352-5569582(-)$1	230	75	79	12.0000
EEee	chr12:30907138-30907450(-)$1	312	34	38	12.0000
nnnn	chr16:1362387-1362694(+)$1	307	115	119	12.0000
EEE{	chr19:2270194-2270439(+)$1	245	2	6	12.0000
E{BB	chr7:155570978-155571262(+)$1	284	133	137	12.0000
deee	chr12:58216952-58217253(-)$1	301	165	169	12.0000
lccc	chr15:93426439-93426691(+)$1	252	17	21	12.0000
eee2	chr7:1474056-1474374(-)$1	318	283	287	12.0000
gggg	chr11:404640-404960(+)$1	320	108	112	12.0000
"""e	chr22:50013878-50014189(-)$1	311	73	77	12.0000
DDD{	chr17:80871474-80871735(+)$1	261	83	87	12.0000
]fff	chr12:112590603-112590925(+)$1	322	82	86	12.0000
F:::	chr5:6599450-6599742(-)$1	292	114	118	12.0000
H}A}	chr20:1165127-1165394(-)$1	267	219	223	12.0000
gggg	chr12:76477659-76477924(-)$1	265	23	27	12.0000
DDDK	chr19:41882291-41882631(+)$1	340	83	87	12.0000
DDDD	chr1:1336739-1337076(+)$1	337	14	18	12.0000
qqqq	chr22:20099497-20099784(-)$1	287	12	16	12.0000
::::	chr19:50168401-50168663(-)$1	262	1	5	12.0000
::::	chr1:200589528-200589859(-)$1	331	0	4	12.0000
EEKK	chr1:150532724-150532997(+)$1	273	51	55	12.0000
JJJJ	chr16:89724920-89725218(+)$1	298	47	51	12.0000
!fff	chr15:30114359-30114724(-)$1	365	121	125	12.0000
FFFF	chr22:22312061-22312320(-)$1	259	96	100	12.0000
dddd	chr7:50860172-50860453(-)$1	281	41	45	12.0000
ffcc	chrX:151121854-151122188(-)$1	334	218	222	12.0000
{AKK	chr12:109124026-109124319(-)$1	293	34	38	12.0000
ccc:	chr11:57509549-57509823(+)$1	274	56	60	12.0000
E{AM	chr9:138902253-138902551(-)$1	298	21	25	12.0000
ddd]	chr2:196522000-196522300(+)$1	300	81	85	12.0000
bbgg	chr12:31477173-31477521(-)$1	348	31	35	12.0000
CC{C	chr4:76649854-76650118(+)$1	264	59	63	12.0000
f[bb	chr19:54970357-54970621(+)$1	264	27	31	12.0000
blll	chr10:74034985-74035263(+)$1	278	43	47	12.0000
DDDK	chr15:64980434-64980749(-)$1	315	134	138	12.0000
cc!!	chr8:30669820-30670092(-)$1	272	31	35	12.0000
HHHH	chr6:15248982-15249302(+)$1	320	4	8	12.0000
{BB{	chr17:80231148-80231435(-)$1	287	18	22	12.0000
BB::	chr17:7477140-7477431(+)$1	291	4	8	12.0000
GLLL	chr20:57467325-57467596(+)$1	271	6	10	12.0000

#DB
....	chr4:1945740-1946006(+)$1	1	36	40	12.0000
(((.	chr11:64073967-64074286(+)$1	1	8	12	12.0000
))..	chr1:228270370-228270687(+)$1	1	54	58	12.0000
((((	chr1:12072316-12072650(+)$1	1	14	18	12.0000
((((	chr19:49964767-49965078(+)$1	1	16	20	12.0000
))))	chr21:47610630-47610942(-)$1	1	76	80	12.0000
((((	chr3:197024714-197025086(-)$1	1	48	52	12.0000
))))	chr17:72767369-72767668(-)$1	1	67	71	12.0000
))))	chr17:76794067-76794362(-)$1	1	75	79	12.0000
))))	chr16:2820956-2821282(+)$1	1	135	139	12.0000
((((	chr18:3451868-3452127(+)$1	1	26	30	12.0000
)))(	chr19:41306991-41307298(+)$1	1	195	199	12.0000
(((.	chr19:7978265-7978568(+)$1	1	22	26	12.0000
))))	chr19:13263743-13263999(+)$1	1	224	228	12.0000
))))	chr22:19431222-19431504(-)$1	1	142	146	12.0000
((((	chr14:21967336-21967660(-)$1	1	7	11	12.0000
))).	chr21:47721047-47721331(-)$1	1	164	168	12.0000
).))	chr3:133308225-133308520(+)$1	1	43	47	12.0000
))).	chr19:10222193-10222511(+)$1	1	107	111	12.0000
.)))	chr5:139045243-139045539(+)$1	1	108	112	12.0000
.)))	chr21:45564894-45565182(+)$1	1	20	24	12.0000
))))	chr11:2965743-2965969(-)$1	1	168	172	12.0000
((.(	chr11:295386-295650(+)$1	1	7	11	12.0000
..))	chr3:186506812-186507021(+)$1	1	123	127	12.0000
)).(	chr12:124082108-124082444(+)$1	1	237	241	12.0000
((((	chr6:36457025-36457340(+)$1	1	40	44	12.0000
((((	chr19:41882620-41882947(+)$1	1	147	151	12.0000
(.((	chr12:109124803-109125153(-)$1	1	72	76	12.0000
..((	chr17:76793969-76794267(-)$1	1	9	13	12.0000
.(((	chr19:47248826-47249132(-)$1	1	4	8	12.0000
(.(.	chr22:20109977-20110226(+)$1	1	14	18	12.0000
))((	chr16:28848121-28848384(+)$1	1	16	20	12.0000
))))	chr22:21804694-21804960(+)$1	1	188	192	12.0000
(...	chr1:228329186-228329462(+)$1	1	189	193	12.0000
))))	chr10:69834719-69835009(-)$1	1	129	133	12.0000
(...	chr8:144678719-144678995(-)$1	1	42	46	12.0000
((((	chr19:1010058-1010355(-)$1	1	74	78	12.0000
).))	chr6:52227141-52227399(+)$1	1	19	23	12.0000
....	chr3:49052691-49052968(+)$1	1	89	93	12.0000
.(((	chr12:51566448-51566855(-)$1	1	158	162	12.0000
.(((	chr1:23697607-23697993(+)$1	1	120	124	12.0000
(.(.	chr2:172379422-172379700(+)$1	1	11	15	12.0000
))))	chr20:1164594-1164857(-)$1	1	13	17	12.0000
....	chr19:2270265-2270515(+)$1	1	59	63	12.0000
(((.	chr22:50016257-50016551(-)$1	1	49	53	12.0000
...)	chr3:186648417-186648727(+)$1	1	48	52	12.0000
((.(	chr7:5569352-5569582(-)$1	1	75	79	12.0000
((((	chr12:30907138-30907450(-)$1	1	34	38	12.0000
....	chr16:1362387-1362694(+)$1	1	115	119	12.0000
(((.	chr19:2270194-2270439(+)$1	1	2	6	12.0000
(.((	chr7:155570978-155571262(+)$1	1	133	137	12.0000
)(((	chr12:58216952-58217253(-)$1	1	165	169	12.0000
.)))	chr15:93426439-93426691(+)$1	1	17	21	12.0000
))).	chr7:1474056-1474374(-)$1	1	283	287	12.0000
))))	chr11:404640-404960(+)$1	1	108	112	12.0000
...(	chr22:50013878-50014189(-)$1	1	73	77	12.0000
(((.	chr17:80871474-80871735(+)$1	1	83	87	12.0000
.)))	chr12:112590603-112590925(+)$1	1	82	86	12.0000
)...	chr5:6599450-6599742(-)$1	1	114	118	12.0000
).).	chr20:1165127-1165394(-)$1	1	219	223	12.0000
))))	chr12:76477659-76477924(-)$1	1	23	27	12.0000
(((.	chr19:41882291-41882631(+)$1	1	83	87	12.0000
((((	chr1:1336739-1337076(+)$1	1	14	18	12.0000
....	chr22:20099497-20099784(-)$1	1	12	16	12.0000
....	chr19:50168401-50168663(-)$1	1	1	5	12.0000
....	chr1:200589528-200589859(-)$1	1	0	4	12.0000
((..	chr1:150532724-150532997(+)$1	1	51	55	12.0000
((((	chr16:89724920-89725218(+)$1	1	47	51	12.0000
.(((	chr15:30114359-30114724(-)$1	1	121	125	12.0000
((((	chr22:22312061-22312320(-)$1	1	96	100	12.0000
((((	chr7:50860172-50860453(-)$1	1	41	45	12.0000
))((	chrX:151121854-151122188(-)$1	1	218	222	12.0000
.(..	chr12:109124026-109124319(-)$1	1	34	38	12.0000
))).	chr11:57509549-57509823(+)$1	1	56	60	12.0000
(.(.	chr9:138902253-138902551(-)$1	1	21	25	12.0000
))).	chr2:196522000-196522300(+)$1	1	81	85	12.0000
((((	chr12:31477173-31477521(-)$1	1	31	35	12.0000
((.(	chr4:76649854-76650118(+)$1	1	59	63	12.0000
(.((	chr19:54970357-54970621(+)$1	1	27	31	12.0000
(...	chr10:74034985-74035263(+)$1	1	43	47	12.0000
(((.	chr15:64980434-64980749(-)$1	1	134	138	12.0000
((..	chr8:30669820-30670092(-)$1	1	31	35	12.0000
((((	chr6:15248982-15249302(+)$1	1	4	8	12.0000
.((.	chr17:80231148-80231435(-)$1	1	18	22	12.0000
((..	chr17:7477140-7477431(+)$1	1	4	8	12.0000
(...	chr20:57467325-57467596(+)$1	1	6	10	12.0000

#PSSM
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	
A : 0.91	a : 0.08	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_transcript_m1_run1.nuc.txt

#NT
aagaagaagaagaa	chr1:6679944-6680220(+)$1	276	125	139	29.5510
AAGAAGGCCAAGAA	chr22:30972787-30973070(-)$1	283	8	22	18.5306
aagaagaggaagaa	chr19:14199905-14200266(-)$1	361	120	134	25.8775
aagaagaagaagaa	chr12:121134018-121134362(+)$1	344	148	162	29.5510
AAGAAGAAGGAGAU	chr12:76442912-76443131(-)$1	219	108	122	23.5306
cugaagaagaaggg	chr12:123466316-123466526(+)$1	210	1	15	18.1224
GAGAGGAAGAAGAC	chr11:58379650-58379886(+)$1	236	100	114	21.5918
AAGAAGAAGAAGAA	chr9:133759421-133759720(+)$1	299	68	82	29.5510
UAGAAGGAGAAGUA	chr12:112509622-112509889(-)$1	267	26	40	19.1428
GAGAAGAAGAAGAU	chr19:11118476-11118715(+)$1	239	155	169	25.3673
GAGGAGAAGAAGCC	chr15:66791644-66791857(-)$1	213	89	103	17.4081
AAGAAAUUGAAGAA	chr4:107248517-107248824(+)$1	307	150	164	19.4489
AACAGAAAGAAGAA	chr17:1268116-1268406(-)$1	290	189	203	18.3265
aagaagaagaagaa	chr5:159831344-159831666(-)$1	322	130	144	29.5510
GAGAAGAAGAAGCA	chr4:666991-667203(-)$1	212	60	74	23.2244
AAGAAGCAGAAGAA	chr22:36687973-36688263(-)$1	290	208	222	25.9795
AGGAAGAUAAAGAC	chr11:65732778-65733019(+)$1	241	32	46	16.6938
UUGAGGAAGAAGAC	chr19:18650347-18650555(-)$1	208	36	50	17.2040
AUGAAGGAgaagag	chr19:49657723-49657989(-)$1	266	63	77	21.1836
CAGAAGAGGAGGAG	chr22:36694930-36695188(-)$1	258	149	163	17.3061
aagaaaaagaagaa	chr10:15183356-15183657(-)$1	301	129	143	26.2857
AAGAAGGCGAAGAA	chr6:26156934-26157208(+)$1	274	149	163	22.6122
aagaagaagaagag	chr17:4575309-4575636(-)$1	327	40	54	28.1224
GAGAAGAAAAAGAC	chr10:79796895-79797107(+)$1	212	68	82	21.5918
CAGCAGAAGCAGAA	chr15:44085805-44086063(+)$1	258	118	132	18.6326
GAGAAGAAGAAGAU	chr19:11118515-11118780(+)$1	265	116	130	25.3673
CAGAAAAAGGAGAG	chr15:91524889-91525165(-)$1	276	23	37	18.3265
AAGAAAAAUAAGAA	chr8:98698800-98699083(+)$1	283	98	112	22.1020
aagaagaagaagag	chr17:4575246-4575509(-)$1	263	54	68	28.1224
aaugagaagaagaa	chrX:64956562-64956866(+)$1	304	107	121	21.2857
GAGAAGCAGAAGAG	chr1:151158173-151158511(-)$1	338	185	199	22.3061
AAGAAGGUGAAGAA	chr12:76443458-76443665(-)$1	207	107	121	23.1224
AAGAAAGAGAAGAA	chr1:237025432-237025692(+)$1	260	164	178	23.0204
aagaaaaaaaagac	chr15:43814829-43815167(+)$1	338	79	93	20.5714
AAGCUGUAGAAGAA	chr9:127998779-127999070(-)$1	291	21	35	17.7142
AAAAAGAAGACGAA	chr21:40608422-40608695(-)$1	273	129	143	20.6734
CAGAAGCAGAAGGU	chr15:66727350-66727642(+)$1	292	99	113	17.7142
GAGAAGAACAAGGG	chr17:37054564-37054879(+)$1	315	121	135	17.9183
AAAAGGAAGAAGAC	chr3:133302745-133303002(+)$1	257	105	119	19.6530
AAGUAGAUGGAGAA	chr1:224492605-224492928(-)$1	323	154	168	18.2244
AGGUAGAAGAAGAU	chr12:76442099-76442344(-)$1	245	58	72	19.5510
CUGGAGAAGAAGAG	chr8:144392188-144392490(-)$1	302	107	121	18.0204
ACCAAGAUGAAGAG	chr2:217364649-217364854(+)$1	205	22	36	16.7959
AACAAGAAAGAGAA	chr6:44414241-44414499(+)$1	258	127	141	17.5102
CAGACCAAGAAGAA	chr19:48254705-48254948(+)$1	243	118	132	18.9387
AUGAUGAUGAAGAA	chr17:61842073-61842309(-)$1	236	127	141	18.6326
AAGAAGAAGAAGAG	chr11:47767643-47767935(-)$1	292	86	100	28.1224
aagaagaagaagga	chr9:136905050-136905413(-)$1	363	79	93	25.6734

#otherMatches

#Struct PSSM
dd]eeeee22ccc6	chr7:66456072-66456322(-)$1	250	61	75	18.9387
ddddbb]bb::AYY	chr1:6679944-6680220(+)$1	276	125	139	29.5510
ppppeeeee:ffff	chr22:30972787-30973070(-)$1	283	8	22	18.5306
ccc::EEEEE}CCC	chr19:14199905-14200266(-)$1	361	120	134	25.8775
DDEEEEEMMMMDDD	chr12:121134018-121134362(+)$1	344	148	162	29.5510
hhhhFFFFFF::::	chr12:76442912-76443131(-)$1	219	108	122	23.5306
CC{AOOOOOOEEEE	chr12:123466316-123466526(+)$1	210	1	15	18.1224
dd]ccc::GGGGGG	chr11:58379650-58379886(+)$1	236	100	114	21.5918
ddd:::::::::::	chr9:133759421-133759720(+)$1	299	68	82	29.5510
rra]==========	chr12:112509622-112509889(-)$1	267	26	40	19.1428
FFFFF@@@@@@@@@	chr19:11118476-11118715(+)$1	239	155	169	25.3673
ccccqqqqqqqqcc	chr15:66791644-66791857(-)$1	213	89	103	17.4081
obb:::::::GGGG	chr4:107248517-107248824(+)$1	307	150	164	19.4489
^^^^^^^^bb9999	chr17:1268116-1268406(-)$1	290	189	203	18.3265
::::::::::::::	chr5:159831344-159831666(-)$1	322	130	144	29.5510
++++++dddd!!cc	chr4:666991-667203(-)$1	212	60	74	23.2244
$$$ddddppppppp	chr22:36687973-36688263(-)$1	290	208	222	25.9795
cccttttttttttt	chr11:65732778-65733019(+)$1	241	32	46	16.6938
ccrrrrrrrrrccc	chr19:18650347-18650555(-)$1	208	36	50	17.2040
::::::::::::::	chr19:49657723-49657989(-)$1	266	63	77	21.1836
f####ccc!!bb[b	chr22:36694930-36695188(-)$1	258	149	163	17.3061
::::::::::::::	chr10:15183356-15183657(-)$1	301	129	143	26.2857
:::::cccoooooo	chr6:26156934-26157208(+)$1	274	149	163	22.6122
::::::::::::::	chr17:4575309-4575636(-)$1	327	40	54	28.1224
iiiiiii:::::dd	chr10:79796895-79797107(+)$1	212	68	82	21.5918
22ccc:::::::::	chr15:44085805-44086063(+)$1	258	118	132	18.6326
ccc::::::::FFF	chr19:11118515-11118780(+)$1	265	116	130	25.3673
VVVVVVVVDDDD{F	chr15:91524889-91525165(-)$1	276	23	37	18.3265
ddd]eeeee]dddd	chr8:98698800-98699083(+)$1	283	98	112	22.1020
VVVVVVVVVVVVVE	chr17:4575246-4575509(-)$1	263	54	68	28.1224
zzzzzzzzzzzzzf	chrX:64956562-64956866(+)$1	304	107	121	21.2857
e::::bboooooob	chr1:151158173-151158511(-)$1	338	185	199	22.3061
]ffffff]dddd]d	chr12:76443458-76443665(-)$1	207	107	121	23.1224
rreeeee]bb::::	chr1:237025432-237025692(+)$1	260	164	178	23.0204
ZBB:::::::::::	chr15:43814829-43815167(+)$1	338	79	93	20.5714
ooodddd:::::::	chr9:127998779-127999070(-)$1	291	21	35	17.7142
:::::AYYEEEEE@	chr21:40608422-40608695(-)$1	273	129	143	20.6734
GGGGGGOOOOOOHH	chr15:66727350-66727642(+)$1	292	99	113	17.7142
ccc::eeeeeffff	chr17:37054564-37054879(+)$1	315	121	135	17.9183
fffffeeeee::EE	chr3:133302745-133303002(+)$1	257	105	119	19.6530
IIIIIIII||||||	chr1:224492605-224492928(-)$1	323	154	168	18.2244
!!ccc+++++++++	chr12:76442099-76442344(-)$1	245	58	72	19.5510
ddddbb]hhhhhhh	chr8:144392188-144392490(-)$1	302	107	121	18.0204
dddd[bb[ccc[dd	chr2:217364649-217364854(+)$1	205	22	36	16.7959
d22===========	chr6:44414241-44414499(+)$1	258	127	141	17.5102
44ffffff777777	chr19:48254705-48254948(+)$1	243	118	132	18.9387
##cccqqqqqqqqc	chr17:61842073-61842309(-)$1	236	127	141	18.6326
::::::::::::::	chr11:47767643-47767935(-)$1	292	86	100	28.1224
^^^^^^^^^^^^^^	chr9:136905050-136905413(-)$1	363	79	93	25.6734

#DB
)).)))))..))).	chr7:66456072-66456322(-)$1	1	61	75	18.9387
)))))).))..)..	chr1:6679944-6680220(+)$1	1	125	139	29.5510
....))))).((((	chr22:30972787-30973070(-)$1	1	8	22	18.5306
)))..))))).)))	chr19:14199905-14200266(-)$1	1	120	134	25.8775
(((((((....(((	chr12:121134018-121134362(+)$1	1	148	162	29.5510
))))((((((....	chr12:76442912-76443131(-)$1	1	108	122	23.5306
((.(......((((	chr12:123466316-123466526(+)$1	1	1	15	18.1224
)).)))..))))))	chr11:58379650-58379886(+)$1	1	100	114	21.5918
)))...........	chr9:133759421-133759720(+)$1	1	68	82	29.5510
..).))))))))))	chr12:112509622-112509889(-)$1	1	26	40	19.1428
))))).........	chr19:11118476-11118715(+)$1	1	155	169	25.3673
((((........))	chr15:66791644-66791857(-)$1	1	89	103	17.4081
.)).......))))	chr4:107248517-107248824(+)$1	1	150	164	19.4489
........))....	chr17:1268116-1268406(-)$1	1	189	203	18.3265
..............	chr5:159831344-159831666(-)$1	1	130	144	29.5510
......((((..((	chr4:666991-667203(-)$1	1	60	74	23.2244
...((((.......	chr22:36687973-36688263(-)$1	1	208	222	25.9795
(((...........	chr11:65732778-65733019(+)$1	1	32	46	16.6938
((.........)))	chr19:18650347-18650555(-)$1	1	36	50	17.2040
..............	chr19:49657723-49657989(-)$1	1	63	77	21.1836
(....(((..((.(	chr22:36694930-36695188(-)$1	1	149	163	17.3061
..............	chr10:15183356-15183657(-)$1	1	129	143	26.2857
.....(((......	chr6:26156934-26157208(+)$1	1	149	163	22.6122
..............	chr17:4575309-4575636(-)$1	1	40	54	28.1224
))))))).....((	chr10:79796895-79797107(+)$1	1	68	82	21.5918
..))).........	chr15:44085805-44086063(+)$1	1	118	132	18.6326
)))........)))	chr19:11118515-11118780(+)$1	1	116	130	25.3673
........((((.(	chr15:91524889-91525165(-)$1	1	23	37	18.3265
))).))))).))))	chr8:98698800-98699083(+)$1	1	98	112	22.1020
.............(	chr17:4575246-4575509(-)$1	1	54	68	28.1224
.............)	chrX:64956562-64956866(+)$1	1	107	121	21.2857
)....((......)	chr1:151158173-151158511(-)$1	1	185	199	22.3061
.)))))).)))).)	chr12:76443458-76443665(-)$1	1	107	121	23.1224
..))))).))....	chr1:237025432-237025692(+)$1	1	164	178	23.0204
.))...........	chr15:43814829-43815167(+)$1	1	79	93	20.5714
...)))).......	chr9:127998779-127999070(-)$1	1	21	35	17.7142
.....)..))))).	chr21:40608422-40608695(-)$1	1	129	143	20.6734
((((((......((	chr15:66727350-66727642(+)$1	1	99	113	17.7142
)))..(((((((((	chr17:37054564-37054879(+)$1	1	121	135	17.9183
))))))))))..))	chr3:133302745-133303002(+)$1	1	105	119	19.6530
))))))))......	chr1:224492605-224492928(-)$1	1	154	168	18.2244
..(((.........	chr12:76442099-76442344(-)$1	1	58	72	19.5510
)))))).)))))))	chr8:144392188-144392490(-)$1	1	107	121	18.0204
((((.((.(((.((	chr2:217364649-217364854(+)$1	1	22	36	16.7959
)..)))))))))))	chr6:44414241-44414499(+)$1	1	127	141	17.5102
..))))))......	chr19:48254705-48254948(+)$1	1	118	132	18.9387
..(((........)	chr17:61842073-61842309(-)$1	1	127	141	18.6326
..............	chr11:47767643-47767935(-)$1	1	86	100	28.1224
..............	chr9:136905050-136905413(-)$1	1	79	93	25.6734

#PSSM
A : 0.42	a : 0.20	G : 0.18	C : 0.12	U : 0.04	c : 0.02	
A : 0.63	a : 0.20	U : 0.08	G : 0.04	u : 0.02	C : 0.02	
G : 0.67	g : 0.20	C : 0.06	A : 0.04	u : 0.02	
A : 0.65	a : 0.20	G : 0.04	C : 0.04	U : 0.04	g : 0.02	
A : 0.63	a : 0.22	G : 0.08	U : 0.04	C : 0.02	
G : 0.63	g : 0.18	A : 0.12	a : 0.04	C : 0.02	
A : 0.55	a : 0.22	G : 0.12	C : 0.06	U : 0.04	
A : 0.57	a : 0.20	U : 0.14	C : 0.04	g : 0.02	G : 0.02	
G : 0.63	g : 0.22	A : 0.06	C : 0.04	U : 0.02	a : 0.02	
A : 0.65	a : 0.24	G : 0.08	C : 0.02	
A : 0.71	a : 0.24	G : 0.02	C : 0.02	
G : 0.75	g : 0.24	
A : 0.65	a : 0.20	g : 0.04	C : 0.04	G : 0.04	U : 0.02	
A : 0.36	a : 0.14	G : 0.14	U : 0.12	C : 0.12	g : 0.08	c : 0.02	

#score	1062.693877551021
#seq	49
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_CDS_m2_run1.nuc.txt

#NT
CUCACUCACCCACCACAUUAACAACAUAAAACCCUCAUUCACACGAGAAAACACCCUCAUGUUCAUACACCUAUCCCCCAUUCUCCUCCUAUCCCUCAACCCCGACAUCAUUAC	chrM:11970-12172(+)$1	202	40	154	342.0000
CUCACUCACCCACCACAUUAACAACAUAAAACCCUCAUUCACACGAGAAAACACCCUCAUGUUCAUACACCUAUCCCCCAUUCUCCUCCUAUCCCUCAACCCCGACAUCAUUAC	chrM:11977-12179(+)$1	202	33	147	342.0000

#otherMatches

#Struct PSSM
:::::::::::::::::::::::::::::::::cccqqqqqqqqccc::ddddoooooodddd::::::::::::GGGGGGG::::::::::::::::::ddddssssssssss	chrM:11985-12189(+)$1	204	25	139	342.0000
:::::::::::::::::::::::::::::::::cccqqqqqqqqccc::ddddoooooodddd::::::::::::GGGGGGG::::::::::::::::::ddddssssssssss	chrM:11970-12172(+)$1	202	40	154	342.0000
:::::::::::::::::::::::::::::::::cccqqqqqqqqccc::ddddoooooodddd::::::::::::GGGGGGG::::::::::::::::::ddddssssssssss	chrM:11977-12179(+)$1	202	33	147	342.0000

#DB
.................................(((........)))..((((......))))............)))))))..................((((..........	chrM:11985-12189(+)$1	1	25	139	342.0000
.................................(((........)))..((((......))))............)))))))..................((((..........	chrM:11970-12172(+)$1	1	40	154	342.0000
.................................(((........)))..((((......))))............)))))))..................((((..........	chrM:11977-12179(+)$1	1	33	147	342.0000

#PSSM
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	

#score	1026.0
#seq	3
#width	114
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_CDS_m2_run1.nuc.txt

#NT
GUGGGGUUAUGUGUGUGGGGGUGCAGGCUGGUGGGGUGGUGACUUCUGCUCCCGUCCCCUUCCCCUGCAGUUCUGUGGCACCAUCGUGCUCAUCUUCUUCCUGGAGCUGGCUGUGGCCGUGCUGGCCUUCCUGUUCCAGGACUGGGUGAGGGACCGGUUCCGGGAGUUCUUCGAGAGCAACAUCAAGUCCUACCGGGACGAUAUCGAUCUGCAAAACCUCAUCGACUCCCUUCAGAAAGCUGUAAGCACCUCCCCAGCGGGCCCCCGAUAGAGCAUGCACCUCCCUGUGCUGCCUGGAGCUGAGUCUAGCAGGGGCAUCAGGCCUU	chr10:82268956-82269321(+)$1	365	30	356	410.5000

#otherMatches

#Struct PSSM
h"""gggggggooooooggggggghhhhhhhh::::::::::FFFFFFMMMMDDDD:::::::::dddd[cccpppppppccc]ddddccc!!bb[ccc"""ffffffmmmmffffff4444cccbb22cccCCCFFFFFF{A{GGGGGGGLLLAKKCCCMMMMIIIIIIIII:::::::::eeeeennnnneeeee::::ccc"""hhhhhhhh"""ccc[a[dddd[ddddllldddd22dddd333a]ccc22hhhhhhhhccc::IIIIIIIIIYYCCCYYAZZZGGGGGGG}AZZZFFFFFF}CCCDDDD?????FFFFFF	chr19:45153009-45153346(+)$1	337	9	335	410.5000
D{EEEEEEEEEE{CCC{DDDD{BBLLLCCC{EEEEE{DDDD{CCCA{CCC:CCCKKEEEEE{CCC:::::::::cccddddmmmmdddd]ccc:::::iiiiiiiii[bb####ddddnnnnndddd22bb]iiiiiiiii::CCC}EEEEEYYCCC::::ggggggg!!a[ccc[ccc!!ccc!!eeeeellleeeee666666ccc]ccc55555ccca22ggggggg:::::::CCC}A}CCCDDDD}EEEEE}CCCBBDDDD}CCCYYEEEEE}EEEEEDDDD~~~~JJJJJJJJJJJ}DDDDGGGGGGG:bb[ddddnnnn	chr10:82268956-82269321(+)$1	365	30	356	410.5000

#DB
(...(((((((......)))))))))))))))..........((((((....((((.........((((.(((.......))).))))(((..((.(((...((((((....))))))....)))))..)))(((((((((.(.(((((((...(..(((....(((((((((.........(((((.....)))))....(((...((((((((...(((.(.((((.((((...))))..))))...).)))..)))))))))))..)))))))))..)))..)...))))))).)...)))))).))))))).....))))))	chr19:45153009-45153346(+)$1	1	9	335	410.5000
(.((((((((((.(((.((((.((...(((.(((((.((((.((((.(((.(((..(((((.(((.........(((((((....)))).))).....(((((((((.((....((((.....))))..)).)))))))))..))).)))))..)))....(((((((..(.(((.(((..(((..(((((...)))))......))).))).....))))..))))))).......))).).))))))).))))).))))))))).)))..))))).)))))))))....))))))))))).))))))))))).((.((((....	chr10:82268956-82269321(+)$1	1	30	356	410.5000

#PSSM
A : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	

#score	821.0
#seq	2
#width	326
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_CDS_m3_run2.nuc.txt

#NT
CAGA	chr19:47634133-47634382(+)$1	249	117	121	11.9999
CAGA	chr12:54677494-54677773(+)$1	279	40	44	11.9999
caga	chr12:6979112-6979329(+)$1	217	10	14	11.9999
CAGA	chr4:2886140-2886494(+)$1	354	209	213	11.9999
CAGA	chr21:35284492-35284728(-)$1	236	91	95	11.9999
CAGA	chr6:30690598-30690835(+)$1	237	62	66	11.9999
CAGA	chr6:37403337-37403608(+)$1	271	87	91	11.9999
CAGA	chr21:34947801-34948028(+)$1	227	26	30	11.9999
CAGA	chr17:57758288-57758517(+)$1	229	57	61	11.9999
CAGA	chr2:54843247-54843488(+)$1	241	23	27	11.9999
CAGA	chr16:27517119-27517346(-)$1	227	35	39	11.9999
CAGA	chr22:35806685-35806950(+)$1	265	8	12	11.9999
CAGA	chr6:129950414-129950680(-)$1	266	79	83	11.9999
CAGA	chr15:91017058-91017298(+)$1	240	66	70	11.9999
CAGA	chr14:21550127-21550378(+)$1	251	96	100	11.9999
CAGA	chr2:44126504-44126743(-)$1	239	46	50	11.9999
CAGA	chr3:58124010-58124240(+)$1	230	100	104	11.9999
CAGA	chr5:140954574-140954814(-)$1	240	108	112	11.9999
CAGA	chr7:99696808-99697085(-)$1	277	149	153	11.9999
CAGA	chr1:881681-881932(-)$1	251	112	116	11.9999
CAGA	chr19:13054492-13054731(+)$1	239	38	42	11.9999
CAGA	chr21:47671368-47671693(-)$1	325	179	183	11.9999
CAGA	chr20:17614123-17614337(-)$1	214	80	84	11.9999
CAGA	chr2:74592919-74593146(-)$1	227	38	42	11.9999
CAGA	chr17:34171840-34172135(+)$1	295	37	41	11.9999
CAGA	chr3:58062856-58063082(+)$1	226	38	42	11.9999
CAGA	chr12:56536524-56536765(+)$1	241	25	29	11.9999
CAGA	chrX:108921217-108921440(-)$1	223	156	160	11.9999
CAGA	chr10:97387234-97387441(-)$1	207	186	190	11.9999
CAGA	chr17:27026771-27027011(+)$1	240	50	54	11.9999
CAGA	chr16:67916288-67916568(+)$1	280	40	44	11.9999
CAGA	chr2:219131549-219131804(-)$1	255	18	22	11.9999
CAGA	chrX:53588972-53589227(-)$1	255	184	188	11.9999
CAGA	chr1:19211866-19212133(-)$1	267	78	82	11.9999
CAGA	chr11:62294322-62294576(-)$1	254	141	145	11.9999
CAGA	chr11:18420892-18421133(+)$1	241	2	6	11.9999
CAGA	chr8:48729959-48730195(-)$1	236	125	129	11.9999
CAGA	chr2:26452959-26453185(-)$1	226	75	79	11.9999
CAGA	chr2:26501902-26502189(+)$1	287	29	33	11.9999
CAGA	chr14:23395812-23396062(-)$1	250	67	71	11.9999
CAGA	chr2:118579395-118579680(+)$1	285	160	164	11.9999
CAGA	chr20:55948441-55948738(+)$1	297	119	123	11.9999
CAGA	chr9:86591837-86592067(-)$1	230	98	102	11.9999
CAGA	chr17:40049307-40049527(-)$1	220	153	157	11.9999
CAGA	chr10:102766611-102766880(+)$1	269	117	121	11.9999
CAGA	chr17:45741508-45741735(+)$1	227	122	126	11.9999
CAGA	chr4:57318088-57318318(+)$1	230	94	98	11.9999
CAGA	chr1:27271993-27272248(+)$1	255	28	32	11.9999
CAGA	chr3:184024442-184024723(+)$1	281	20	24	11.9999
CAGA	chr3:128525229-128525496(+)$1	267	38	42	11.9999
CAGA	chr20:54972272-54972521(+)$1	249	35	39	11.9999
CAGA	chr1:120279636-120279875(+)$1	239	181	185	11.9999
CAGA	chr17:35482518-35482762(-)$1	244	95	99	11.9999
caga	chr17:1562554-1562804(-)$1	250	241	245	11.9999
CAGA	chr5:150505883-150506141(-)$1	258	143	147	11.9999
CAGA	chr3:49137597-49137828(-)$1	231	46	50	11.9999
CAGA	chr2:109380787-109381053(+)$1	266	22	26	11.9999
CAGA	chr17:73317638-73317918(-)$1	280	115	119	11.9999
CAGA	chr7:2394718-2395056(+)$1	338	58	62	11.9999
CAGA	chrX:153592958-153593185(-)$1	227	31	35	11.9999
CAGA	chr2:74590020-74590259(-)$1	239	228	232	11.9999
CAGA	chr2:54880799-54881049(+)$1	250	15	19	11.9999
CAGA	chr12:53345428-53345665(+)$1	237	44	48	11.9999
CAGA	chr16:69746835-69747130(-)$1	295	95	99	11.9999
CAGA	chr7:94292899-94293193(+)$1	294	59	63	11.9999
CAGA	chr17:7479839-7480106(+)$1	267	5	9	11.9999
CAGA	chr19:10597280-10597592(-)$1	312	146	150	11.9999
CAGA	chr3:131181431-131181811(-)$1	380	183	187	11.9999
CAGA	chr19:39976944-39977221(+)$1	277	89	93	11.9999
CAGA	chr17:1562629-1562857(-)$1	228	40	44	11.9999
CAGA	chr12:81536785-81537069(+)$1	284	7	11	11.9999
CAGA	chr22:31329946-31330195(-)$1	249	109	113	11.9999
CAGA	chr17:7400574-7400797(+)$1	223	163	167	11.9999
CAGA	chr18:43664221-43664429(-)$1	208	67	71	11.9999
CAGA	chr1:109766516-109766756(+)$1	240	95	99	11.9999
CAGA	chr20:5100125-5100414(-)$1	289	81	85	11.9999
CAGA	chr2:220429918-220430290(-)$1	372	51	55	11.9999
CAGA	chr4:39310324-39310655(-)$1	331	85	89	11.9999
CAGA	chr2:191862482-191862770(-)$1	288	85	89	11.9999
CAGA	chrX:47070346-47070587(+)$1	241	133	137	11.9999
CAGA	chr2:207012376-207012650(-)$1	274	211	215	11.9999
CAGA	chr16:28855450-28855659(-)$1	209	164	168	11.9999
CAGA	chr10:51584546-51584807(+)$1	261	4	8	11.9999

#otherMatches

#Struct PSSM
IIII	chr14:69351395-69351690(-)$1	295	22	26	11.9999
a:::	chr19:47634133-47634382(+)$1	249	117	121	11.9999
ffff	chr12:54677494-54677773(+)$1	279	40	44	11.9999
eee:	chr12:6979112-6979329(+)$1	217	10	14	11.9999
d333	chr4:2886140-2886494(+)$1	354	209	213	11.9999
ccco	chr21:35284492-35284728(-)$1	236	91	95	11.9999
HHH:	chr6:30690598-30690835(+)$1	237	62	66	11.9999
22dd	chr6:37403337-37403608(+)$1	271	87	91	11.9999
"ccc	chr21:34947801-34948028(+)$1	227	26	30	11.9999
NNNN	chr17:57758288-57758517(+)$1	229	57	61	11.9999
e!!d	chr2:54843247-54843488(+)$1	241	23	27	11.9999
tttt	chr16:27517119-27517346(-)$1	227	35	39	11.9999
FFFL	chr22:35806685-35806950(+)$1	265	8	12	11.9999
cccq	chr6:129950414-129950680(-)$1	266	79	83	11.9999
::::	chr15:91017058-91017298(+)$1	240	66	70	11.9999
JJJB	chr14:21550127-21550378(+)$1	251	96	100	11.9999
clll	chr2:44126504-44126743(-)$1	239	46	50	11.9999
!!gg	chr3:58124010-58124240(+)$1	230	100	104	11.9999
dd!!	chr5:140954574-140954814(-)$1	240	108	112	11.9999
:III	chr7:99696808-99697085(-)$1	277	149	153	11.9999
d[ee	chr1:881681-881932(-)$1	251	112	116	11.9999
::::	chr19:13054492-13054731(+)$1	239	38	42	11.9999
ddd]	chr21:47671368-47671693(-)$1	325	179	183	11.9999
fff]	chr20:17614123-17614337(-)$1	214	80	84	11.9999
ddd]	chr2:74592919-74593146(-)$1	227	38	42	11.9999
bb22	chr17:34171840-34172135(+)$1	295	37	41	11.9999
cc::	chr3:58062856-58063082(+)$1	226	38	42	11.9999
FFF:	chr12:56536524-56536765(+)$1	241	25	29	11.9999
~III	chrX:108921217-108921440(-)$1	223	156	160	11.9999
eenn	chr10:97387234-97387441(-)$1	207	186	190	11.9999
FFF:	chr17:27026771-27027011(+)$1	240	50	54	11.9999
FFF:	chr16:67916288-67916568(+)$1	280	40	44	11.9999
ggg:	chr2:219131549-219131804(-)$1	255	18	22	11.9999
cc22	chrX:53588972-53589227(-)$1	255	184	188	11.9999
5555	chr1:19211866-19212133(-)$1	267	78	82	11.9999
::::	chr11:62294322-62294576(-)$1	254	141	145	11.9999
DDdd	chr11:18420892-18421133(+)$1	241	2	6	11.9999
ccc:	chr8:48729959-48730195(-)$1	236	125	129	11.9999
4444	chr2:26452959-26453185(-)$1	226	75	79	11.9999
EEEE	chr2:26501902-26502189(+)$1	287	29	33	11.9999
eee]	chr14:23395812-23396062(-)$1	250	67	71	11.9999
qqqq	chr2:118579395-118579680(+)$1	285	160	164	11.9999
ccc!	chr20:55948441-55948738(+)$1	297	119	123	11.9999
fffm	chr9:86591837-86592067(-)$1	230	98	102	11.9999
]ccc	chr17:40049307-40049527(-)$1	220	153	157	11.9999
yyyy	chr10:102766611-102766880(+)$1	269	117	121	11.9999
gggg	chr17:45741508-45741735(+)$1	227	122	126	11.9999
ffff	chr4:57318088-57318318(+)$1	230	94	98	11.9999
sscc	chr1:27271993-27272248(+)$1	255	28	32	11.9999
LCCC	chr3:184024442-184024723(+)$1	281	20	24	11.9999
mmdd	chr3:128525229-128525496(+)$1	267	38	42	11.9999
ee!!	chr20:54972272-54972521(+)$1	249	35	39	11.9999
F}AY	chr1:120279636-120279875(+)$1	239	181	185	11.9999
8eee	chr17:35482518-35482762(-)$1	244	95	99	11.9999
f:::	chr17:1562554-1562804(-)$1	250	241	245	11.9999
FFFF	chr5:150505883-150506141(-)$1	258	143	147	11.9999
nnnn	chr3:49137597-49137828(-)$1	231	46	50	11.9999
C:::	chr2:109380787-109381053(+)$1	266	22	26	11.9999
ffff	chr17:73317638-73317918(-)$1	280	115	119	11.9999
rrrr	chr7:2394718-2395056(+)$1	338	58	62	11.9999
ccc:	chrX:153592958-153593185(-)$1	227	31	35	11.9999
::::	chr2:74590020-74590259(-)$1	239	228	232	11.9999
gggg	chr2:54880799-54881049(+)$1	250	15	19	11.9999
GGKK	chr12:53345428-53345665(+)$1	237	44	48	11.9999
JJJJ	chr16:69746835-69747130(-)$1	295	95	99	11.9999
eeqq	chr7:94292899-94293193(+)$1	294	59	63	11.9999
ccc[	chr17:7479839-7480106(+)$1	267	5	9	11.9999
ddd2	chr19:10597280-10597592(-)$1	312	146	150	11.9999
ffff	chr3:131181431-131181811(-)$1	380	183	187	11.9999
ddd7	chr19:39976944-39977221(+)$1	277	89	93	11.9999
eee#	chr17:1562629-1562857(-)$1	228	40	44	11.9999
HHHH	chr12:81536785-81537069(+)$1	284	7	11	11.9999
gggg	chr22:31329946-31330195(-)$1	249	109	113	11.9999
bb##	chr17:7400574-7400797(+)$1	223	163	167	11.9999
frrr	chr18:43664221-43664429(-)$1	208	67	71	11.9999
^^^^	chr1:109766516-109766756(+)$1	240	95	99	11.9999
dd22	chr20:5100125-5100414(-)$1	289	81	85	11.9999
::DD	chr2:220429918-220430290(-)$1	372	51	55	11.9999
F:::	chr4:39310324-39310655(-)$1	331	85	89	11.9999
ccc:	chr2:191862482-191862770(-)$1	288	85	89	11.9999
dqqq	chrX:47070346-47070587(+)$1	241	133	137	11.9999
bbff	chr2:207012376-207012650(-)$1	274	211	215	11.9999
c444	chr16:28855450-28855659(-)$1	209	164	168	11.9999
::::	chr10:51584546-51584807(+)$1	261	4	8	11.9999

#DB
((((	chr14:69351395-69351690(-)$1	1	22	26	11.9999
)...	chr19:47634133-47634382(+)$1	1	117	121	11.9999
))))	chr12:54677494-54677773(+)$1	1	40	44	11.9999
))).	chr12:6979112-6979329(+)$1	1	10	14	11.9999
)...	chr4:2886140-2886494(+)$1	1	209	213	11.9999
(((.	chr21:35284492-35284728(-)$1	1	91	95	11.9999
(((.	chr6:30690598-30690835(+)$1	1	62	66	11.9999
..))	chr6:37403337-37403608(+)$1	1	87	91	11.9999
.(((	chr21:34947801-34948028(+)$1	1	26	30	11.9999
....	chr17:57758288-57758517(+)$1	1	57	61	11.9999
(..(	chr2:54843247-54843488(+)$1	1	23	27	11.9999
....	chr16:27517119-27517346(-)$1	1	35	39	11.9999
(((.	chr22:35806685-35806950(+)$1	1	8	12	11.9999
(((.	chr6:129950414-129950680(-)$1	1	79	83	11.9999
....	chr15:91017058-91017298(+)$1	1	66	70	11.9999
((((	chr14:21550127-21550378(+)$1	1	96	100	11.9999
(...	chr2:44126504-44126743(-)$1	1	46	50	11.9999
..((	chr3:58124010-58124240(+)$1	1	100	104	11.9999
((..	chr5:140954574-140954814(-)$1	1	108	112	11.9999
.(((	chr7:99696808-99697085(-)$1	1	149	153	11.9999
(.((	chr1:881681-881932(-)$1	1	112	116	11.9999
....	chr19:13054492-13054731(+)$1	1	38	42	11.9999
))).	chr21:47671368-47671693(-)$1	1	179	183	11.9999
))).	chr20:17614123-17614337(-)$1	1	80	84	11.9999
))).	chr2:74592919-74593146(-)$1	1	38	42	11.9999
))..	chr17:34171840-34172135(+)$1	1	37	41	11.9999
))..	chr3:58062856-58063082(+)$1	1	38	42	11.9999
(((.	chr12:56536524-56536765(+)$1	1	25	29	11.9999
.)))	chrX:108921217-108921440(-)$1	1	156	160	11.9999
((..	chr10:97387234-97387441(-)$1	1	186	190	11.9999
(((.	chr17:27026771-27027011(+)$1	1	50	54	11.9999
(((.	chr16:67916288-67916568(+)$1	1	40	44	11.9999
))).	chr2:219131549-219131804(-)$1	1	18	22	11.9999
))..	chrX:53588972-53589227(-)$1	1	184	188	11.9999
....	chr1:19211866-19212133(-)$1	1	78	82	11.9999
....	chr11:62294322-62294576(-)$1	1	141	145	11.9999
((((	chr11:18420892-18421133(+)$1	1	2	6	11.9999
))).	chr8:48729959-48730195(-)$1	1	125	129	11.9999
....	chr2:26452959-26453185(-)$1	1	75	79	11.9999
((((	chr2:26501902-26502189(+)$1	1	29	33	11.9999
))).	chr14:23395812-23396062(-)$1	1	67	71	11.9999
....	chr2:118579395-118579680(+)$1	1	160	164	11.9999
(((.	chr20:55948441-55948738(+)$1	1	119	123	11.9999
(((.	chr9:86591837-86592067(-)$1	1	98	102	11.9999
.)))	chr17:40049307-40049527(-)$1	1	153	157	11.9999
....	chr10:102766611-102766880(+)$1	1	117	121	11.9999
((((	chr17:45741508-45741735(+)$1	1	122	126	11.9999
))))	chr4:57318088-57318318(+)$1	1	94	98	11.9999
..))	chr1:27271993-27272248(+)$1	1	28	32	11.9999
.(((	chr3:184024442-184024723(+)$1	1	20	24	11.9999
..))	chr3:128525229-128525496(+)$1	1	38	42	11.9999
((..	chr20:54972272-54972521(+)$1	1	35	39	11.9999
).).	chr1:120279636-120279875(+)$1	1	181	185	11.9999
.)))	chr17:35482518-35482762(-)$1	1	95	99	11.9999
)...	chr17:1562554-1562804(-)$1	1	241	245	11.9999
((((	chr5:150505883-150506141(-)$1	1	143	147	11.9999
....	chr3:49137597-49137828(-)$1	1	46	50	11.9999
(...	chr2:109380787-109381053(+)$1	1	22	26	11.9999
((((	chr17:73317638-73317918(-)$1	1	115	119	11.9999
....	chr7:2394718-2395056(+)$1	1	58	62	11.9999
))).	chrX:153592958-153593185(-)$1	1	31	35	11.9999
....	chr2:74590020-74590259(-)$1	1	228	232	11.9999
((((	chr2:54880799-54881049(+)$1	1	15	19	11.9999
((..	chr12:53345428-53345665(+)$1	1	44	48	11.9999
((((	chr16:69746835-69747130(-)$1	1	95	99	11.9999
((..	chr7:94292899-94293193(+)$1	1	59	63	11.9999
(((.	chr17:7479839-7480106(+)$1	1	5	9	11.9999
))).	chr19:10597280-10597592(-)$1	1	146	150	11.9999
((((	chr3:131181431-131181811(-)$1	1	183	187	11.9999
))).	chr19:39976944-39977221(+)$1	1	89	93	11.9999
(((.	chr17:1562629-1562857(-)$1	1	40	44	11.9999
((((	chr12:81536785-81537069(+)$1	1	7	11	11.9999
((((	chr22:31329946-31330195(-)$1	1	109	113	11.9999
((..	chr17:7400574-7400797(+)$1	1	163	167	11.9999
(...	chr18:43664221-43664429(-)$1	1	67	71	11.9999
....	chr1:109766516-109766756(+)$1	1	95	99	11.9999
))..	chr20:5100125-5100414(-)$1	1	81	85	11.9999
..((	chr2:220429918-220430290(-)$1	1	51	55	11.9999
(...	chr4:39310324-39310655(-)$1	1	85	89	11.9999
))).	chr2:191862482-191862770(-)$1	1	85	89	11.9999
(...	chrX:47070346-47070587(+)$1	1	133	137	11.9999
))))	chr2:207012376-207012650(-)$1	1	211	215	11.9999
)...	chr16:28855450-28855659(-)$1	1	164	168	11.9999
....	chr10:51584546-51584807(+)$1	1	4	8	11.9999

#PSSM
C : 0.97	c : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	

#score	1007.9999999999995
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_transcript_m2_run1.nuc.txt

#NT
cuuuauuucuuuc	chr5:67051577-67051832(-)$1	255	178	191	20.1000
cuuuuuuuuuuuu	chr5:79980937-79981208(+)$1	271	82	95	28.3000
cuuuuuuuuuuuu	chr1:92747198-92747448(-)$1	250	82	95	28.3000
cuuuuuguuuuua	chr4:68310535-68310788(-)$1	253	92	105	23.0000
cuuugugguuuua	chr8:11677471-11677730(+)$1	259	10	23	17.5000
cuuguuaguuuuu	chr6:37917746-37917994(+)$1	248	187	200	16.4000
cuuuguucuuuuu	chr1:197669141-197669409(-)$1	268	93	106	23.2000
guuuuuuuuguua	chr3:142727443-142727702(+)$1	259	158	171	18.3000
cauuguuuuuuuu	chr6:13676914-13677163(-)$1	249	204	217	22.0000
cuuuauuuuguug	chr1:143140681-143140935(+)$1	254	101	114	19.3000
cuuuguucuuuuu	chr3:157961010-157961294(+)$1	284	269	282	23.2000
cuguuguuuuuug	chr1:100871511-100871739(+)$1	228	82	95	17.6000
cuuuuuucuuuuu	chr4:80911824-80912046(-)$1	222	192	205	25.3000
cucuuuuuuuuuc	chr2:15484199-15484453(-)$1	254	190	203	21.7000
cuuuuuucuguuu	chr2:178292857-178293098(+)$1	241	24	37	20.9000
cuuuucuuuuuuu	chr8:100059705-100059944(+)$1	239	208	221	24.4000
cuuuuuuuuugua	chr1:179949243-179949475(+)$1	232	178	191	22.0000
guuuuuuuuuugu	chr5:34241043-34241287(-)$1	244	80	93	20.2000
CUUUUAUCUUUUA	chr1:100833629-100833875(+)$1	246	71	84	19.3000
cuuuuuuuuuucg	chr8:11676100-11676338(+)$1	238	97	110	21.8000
aguuuuuuuuuuc	chr1:51249826-51250074(-)$1	248	91	104	17.5000
cuucuuuuuuuug	chr1:213365086-213365312(+)$1	226	72	85	21.5000
Cuuuguuuuuucu	chr2:55262116-55262349(-)$1	233	96	109	21.8000
cuuuguugcuuuu	chr1:213322952-213323195(+)$1	243	85	98	19.3000
cuuuauguuuuuu	chr9:134031111-134031367(+)$1	256	23	36	22.4000
CUUUUAUCUUUUG	chr11:47195054-47195294(-)$1	240	143	156	19.1000
cuuuuuuuuuuuu	chr10:21993458-21993714(+)$1	256	81	94	28.3000
cuuuauuuauuua	chr20:36708875-36709086(+)$1	211	45	58	20.0000
ccuuuuuuuuuuc	chr2:32794806-32795052(+)$1	246	170	183	21.7000
cuuuuuuuauugu	chr8:74595020-74595298(-)$1	278	72	85	20.0000
guuuuuuuuuuuu	chr1:179948438-179948697(+)$1	259	86	99	24.6000
cuuuuuuuuuuuu	chr4:68520397-68520643(-)$1	246	47	60	28.3000
cuguuugguuuuu	chr18:2687412-2687680(+)$1	268	88	101	17.1000
cuuuucuucuuua	chr7:96754345-96754607(+)$1	262	89	102	19.0000
cuuucuguuuguu	chr18:9170880-9171121(+)$1	241	12	25	17.7000
cuuucuuucuuuc	chr6:4840432-4840685(+)$1	253	192	205	19.8000
gauuuuuuuuuua	chr1:246107475-246107708(-)$1	233	93	106	18.5000
cuuuauuucuuuc	chr17:28735801-28736102(+)$1	301	9	22	20.1000
cucuuucuuuuuu	chrX:109319261-109319501(+)$1	240	14	27	20.1000
CUUUCUUUCUUUG	chrX:48572327-48572562(-)$1	235	175	188	19.9000
cauuuuuuguuuu	chr10:99977468-99977732(+)$1	264	56	69	20.1000
cuuuguucuuuuu	chr6:47525455-47525695(+)$1	240	50	63	23.2000
cuuugucuuuuuu	chr19:21296842-21297076(+)$1	234	61	74	22.4000
cuuuguuuuuguu	chr6:143493270-143493505(+)$1	235	74	87	21.8000
cuuuauguuuuug	chr4:104185265-104185499(+)$1	234	10	23	20.3000
cuuuucuuuuuuu	chr17:80153353-80153597(-)$1	244	88	101	24.4000
cuuuguucuuuuu	chr4:129953061-129953327(-)$1	266	122	135	23.2000
guuuucuuuuuuu	chr2:168704672-168704898(-)$1	226	89	102	20.7000
guuuuuauuuuua	chr5:12619294-12619527(+)$1	233	79	92	18.9000

#otherMatches

#Struct PSSM
::::::::::::g	chr22:19991793-19992020(-)$1	227	0	13	28.3000
F______DDDDZZ	chr5:67051577-67051832(-)$1	255	178	191	20.1000
FF:::::::::::	chr5:79980937-79981208(+)$1	271	82	95	28.3000
::::::::::::C	chr1:92747198-92747448(-)$1	250	82	95	28.3000
c:::::IIIIIII	chr4:68310535-68310788(-)$1	253	92	105	23.0000
::::ddddooooo	chr8:11677471-11677730(+)$1	259	10	23	17.5000
E?????JJJJJJJ	chr6:37917746-37917994(+)$1	248	187	200	16.4000
^^^^^^^^^^^^^	chr1:197669141-197669409(-)$1	268	93	106	23.2000
c!!dddd[eeeee	chr3:142727443-142727702(+)$1	259	158	171	18.3000
:::::::::::::	chr6:13676914-13677163(-)$1	249	204	217	22.0000
ctttttttttttc	chr1:143140681-143140935(+)$1	254	101	114	19.3000
ADDDD}EEEEE::	chr3:157961010-157961294(+)$1	284	269	282	23.2000
mmdddd666666d	chr1:100871511-100871739(+)$1	228	82	95	17.6000
buuuuuuuuuuuu	chr4:80911824-80912046(-)$1	222	192	205	25.3000
b::::::::::::	chr2:15484199-15484453(-)$1	254	190	203	21.7000
c4444ddddeeee	chr2:178292857-178293098(+)$1	241	24	37	20.9000
b::::::::::::	chr8:100059705-100059944(+)$1	239	208	221	24.4000
>>>>>>>>>dddd	chr1:179949243-179949475(+)$1	232	178	191	22.0000
]ccc7777777bb	chr5:34241043-34241287(-)$1	244	80	93	20.2000
oooeeeee:::::	chr1:100833629-100833875(+)$1	246	71	84	19.3000
d>>>>>>>>>>>>	chr8:11676100-11676338(+)$1	238	97	110	21.8000
ee!!ddddttttt	chr1:51249826-51250074(-)$1	248	91	104	17.5000
d[ddddooooood	chr1:213365086-213365312(+)$1	226	72	85	21.5000
>>>>>>>>>>>>>	chr2:55262116-55262349(-)$1	233	96	109	21.8000
h:::::::::hhh	chr1:213322952-213323195(+)$1	243	85	98	19.3000
hhhhhh:::::::	chr9:134031111-134031367(+)$1	256	23	36	22.4000
ppppeeeee:hhh	chr11:47195054-47195294(-)$1	240	143	156	19.1000
ggggg>>>>>>>>	chr10:21993458-21993714(+)$1	256	81	94	28.3000
::::::::::::e	chr20:36708875-36709086(+)$1	211	45	58	20.0000
]a666666hhhhh	chr2:32794806-32795052(+)$1	246	170	183	21.7000
d4444eeeee]dd	chr8:74595020-74595298(-)$1	278	72	85	20.0000
:::::::::::::	chr1:179948438-179948697(+)$1	259	86	99	24.6000
d::::::::::::	chr4:68520397-68520643(-)$1	246	47	60	28.3000
::::::BB}FFFF	chr18:2687412-2687680(+)$1	268	88	101	17.1000
h::::::::::::	chr7:96754345-96754607(+)$1	262	89	102	19.0000
::::=========	chr18:9170880-9171121(+)$1	241	12	25	17.7000
f"""a!!bb"""a	chr6:4840432-4840685(+)$1	253	192	205	19.8000
ddddqqqqqqqqd	chr1:246107475-246107708(-)$1	233	93	106	18.5000
HHHHHH:::::::	chr17:28735801-28736102(+)$1	301	9	22	20.1000
HH:::::::gggg	chrX:109319261-109319501(+)$1	240	14	27	20.1000
:::::::::::::	chrX:48572327-48572562(-)$1	235	175	188	19.9000
iiiii"""bbmmm	chr10:99977468-99977732(+)$1	264	56	69	20.1000
eeee::::::::D	chr6:47525455-47525695(+)$1	240	50	63	23.2000
:FFFFFF:hhhhh	chr19:21296842-21297076(+)$1	234	61	74	22.4000
+++cccppppppp	chr6:143493270-143493505(+)$1	235	74	87	21.8000
ctttttttttttc	chr4:104185265-104185499(+)$1	234	10	23	20.3000
eeeebb22dddd]	chr17:80153353-80153597(-)$1	244	88	101	24.4000
cc:::::::::::	chr4:129953061-129953327(-)$1	266	122	135	23.2000
fffff::::::::	chr2:168704672-168704898(-)$1	226	89	102	20.7000
C::::::::ffff	chr5:12619294-12619527(+)$1	233	79	92	18.9000

#DB
............(	chr22:19991793-19992020(-)$1	1	0	13	28.3000
)......))))..	chr5:67051577-67051832(-)$1	1	178	191	20.1000
((...........	chr5:79980937-79981208(+)$1	1	82	95	28.3000
............(	chr1:92747198-92747448(-)$1	1	82	95	28.3000
).....(((((((	chr4:68310535-68310788(-)$1	1	92	105	23.0000
....((((.....	chr8:11677471-11677730(+)$1	1	10	23	17.5000
).....)))))))	chr6:37917746-37917994(+)$1	1	187	200	16.4000
.............	chr1:197669141-197669409(-)$1	1	93	106	23.2000
(..((((.(((((	chr3:142727443-142727702(+)$1	1	158	171	18.3000
.............	chr6:13676914-13677163(-)$1	1	204	217	22.0000
(...........)	chr1:143140681-143140935(+)$1	1	101	114	19.3000
))))).)))))..	chr3:157961010-157961294(+)$1	1	269	282	23.2000
..))))......)	chr1:100871511-100871739(+)$1	1	82	95	17.6000
(............	chr4:80911824-80912046(-)$1	1	192	205	25.3000
)............	chr2:15484199-15484453(-)$1	1	190	203	21.7000
)....))))))))	chr2:178292857-178293098(+)$1	1	24	37	20.9000
)............	chr8:100059705-100059944(+)$1	1	208	221	24.4000
.........))))	chr1:179949243-179949475(+)$1	1	178	191	22.0000
.))).......))	chr5:34241043-34241287(-)$1	1	80	93	20.2000
...))))).....	chr1:100833629-100833875(+)$1	1	71	84	19.3000
)............	chr8:11676100-11676338(+)$1	1	97	110	21.8000
((..((((.....	chr1:51249826-51250074(-)$1	1	91	104	17.5000
(.((((......)	chr1:213365086-213365312(+)$1	1	72	85	21.5000
.............	chr2:55262116-55262349(-)$1	1	96	109	21.8000
).........(((	chr1:213322952-213323195(+)$1	1	85	98	19.3000
)))))).......	chr9:134031111-134031367(+)$1	1	23	36	22.4000
....))))).(((	chr11:47195054-47195294(-)$1	1	143	156	19.1000
)))))........	chr10:21993458-21993714(+)$1	1	81	94	28.3000
............(	chr20:36708875-36709086(+)$1	1	45	58	20.0000
.)......)))))	chr2:32794806-32795052(+)$1	1	170	183	21.7000
)....))))).))	chr8:74595020-74595298(-)$1	1	72	85	20.0000
.............	chr1:179948438-179948697(+)$1	1	86	99	24.6000
)............	chr4:68520397-68520643(-)$1	1	47	60	28.3000
......)).))))	chr18:2687412-2687680(+)$1	1	88	101	17.1000
)............	chr7:96754345-96754607(+)$1	1	89	102	19.0000
....(((((((((	chr18:9170880-9171121(+)$1	1	12	25	17.7000
(...(..((...(	chr6:4840432-4840685(+)$1	1	192	205	19.8000
((((........)	chr1:246107475-246107708(-)$1	1	93	106	18.5000
((((((.......	chr17:28735801-28736102(+)$1	1	9	22	20.1000
((.......((((	chrX:109319261-109319501(+)$1	1	14	27	20.1000
.............	chrX:48572327-48572562(-)$1	1	175	188	19.9000
(((((...((...	chr10:99977468-99977732(+)$1	1	56	69	20.1000
))))........(	chr6:47525455-47525695(+)$1	1	50	63	23.2000
.((((((.(((((	chr19:21296842-21297076(+)$1	1	61	74	22.4000
...(((.......	chr6:143493270-143493505(+)$1	1	74	87	21.8000
(...........)	chr4:104185265-104185499(+)$1	1	10	23	20.3000
))))))..)))).	chr17:80153353-80153597(-)$1	1	88	101	24.4000
))...........	chr4:129953061-129953327(-)$1	1	122	135	23.2000
)))))........	chr2:168704672-168704898(-)$1	1	89	102	20.7000
(........((((	chr5:12619294-12619527(+)$1	1	79	92	18.9000

#PSSM
c : 0.78	g : 0.12	C : 0.08	a : 0.02	
u : 0.84	a : 0.06	U : 0.06	g : 0.02	c : 0.02	
u : 0.86	U : 0.06	g : 0.04	c : 0.04	
u : 0.90	U : 0.06	g : 0.02	c : 0.02	
u : 0.58	g : 0.19	a : 0.12	U : 0.04	c : 0.04	C : 0.02	
u : 0.84	c : 0.08	A : 0.04	g : 0.02	U : 0.02	
u : 0.74	g : 0.12	U : 0.06	a : 0.04	c : 0.04	
u : 0.74	c : 0.12	g : 0.08	C : 0.04	U : 0.02	
u : 0.78	c : 0.10	U : 0.04	a : 0.04	C : 0.02	g : 0.02	
u : 0.88	g : 0.06	U : 0.06	
u : 0.88	g : 0.06	U : 0.06	
u : 0.86	U : 0.06	g : 0.04	c : 0.04	
u : 0.56	a : 0.16	c : 0.12	g : 0.10	G : 0.04	A : 0.02	

#score	1072.800000000001
#seq	50
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_CDS_m2_run2.nuc.txt

#NT
CUC	chr17:36955432-36955743(-)$1	311	22	25	9.0000
CUC	chr11:760139-760348(+)$1	209	25	28	9.0000
CUC	chr7:132481175-132481438(-)$1	263	73	76	9.0000
CUC	chr5:137521564-137521839(+)$1	275	14	17	9.0000
CUC	chr3:185636052-185636309(-)$1	257	97	100	9.0000
CUC	chr9:134330423-134330654(+)$1	231	7	10	9.0000
CUC	chr9:131590910-131591221(-)$1	311	10	13	9.0000
CUC	chr19:10291360-10291592(-)$1	232	55	58	9.0000
CUC	chr1:28564266-28564519(+)$1	253	29	32	9.0000
CUC	chrX:77380345-77380617(+)$1	272	3	6	9.0000
cuc	chr6:44220693-44220916(+)$1	223	1	4	9.0000
CUC	chr20:39728722-39728958(+)$1	236	67	70	9.0000
CUC	chr8:117738155-117738512(-)$1	357	75	78	9.0000
CUC	chr1:156287122-156287411(-)$1	289	115	118	9.0000
CUC	chr17:72205842-72206055(+)$1	213	11	14	9.0000
CUC	chr3:12881539-12881749(-)$1	210	22	25	9.0000
CUC	chr11:3023096-3023384(-)$1	288	64	67	9.0000
CUC	chr3:47663596-47663868(-)$1	272	80	83	9.0000
CUC	chr2:145146924-145147191(-)$1	267	92	95	9.0000
CUC	chr6:33243481-33243707(+)$1	226	78	81	9.0000
CUC	chr19:46879659-46879919(+)$1	260	22	25	9.0000
CUC	chr2:198361786-198362109(-)$1	323	181	184	9.0000
CUC	chr8:124381235-124381467(-)$1	232	55	58	9.0000
CUC	chr6:44219388-44219621(+)$1	233	67	70	9.0000
CUC	chr6:133136023-133136319(+)$1	296	148	151	9.0000
CUC	chr3:184041255-184041479(+)$1	224	150	153	9.0000
CUC	chr22:30975023-30975294(-)$1	271	227	230	9.0000
CUC	chr1:26227463-26227678(-)$1	215	9	12	9.0000
CUC	chr18:9533680-9533923(+)$1	243	6	9	9.0000
CUC	chr7:132523074-132523329(-)$1	255	102	105	9.0000
CUC	chr11:18422280-18422635(+)$1	355	97	100	9.0000
CUC	chr18:47015627-47015872(-)$1	245	31	34	9.0000
cuc	chr17:8396221-8396443(-)$1	222	3	6	9.0000
CUC	chr12:76446923-76447159(-)$1	236	143	146	9.0000
CUC	chr16:11931787-11932056(-)$1	269	20	23	9.0000
CUC	chr22:29935223-29935556(-)$1	333	144	147	9.0000
cuc	chr12:56498364-56498687(+)$1	323	2	5	9.0000
CUC	chr1:245019105-245019327(-)$1	222	12	15	9.0000
CUC	chr17:1268116-1268406(-)$1	290	119	122	9.0000
CUC	chr1:22054965-22055266(-)$1	301	286	289	9.0000
CUC	chr1:45243263-45243520(+)$1	257	9	12	9.0000
CUC	chr17:27011591-27011843(+)$1	252	0	3	9.0000
CUC	chr1:33252480-33252751(-)$1	271	29	32	9.0000
CUC	chr17:49337872-49338142(+)$1	270	57	60	9.0000
CUC	chr1:205687326-205687667(-)$1	341	25	28	9.0000
CUC	chr1:45228130-45228416(+)$1	286	79	82	9.0000
CUC	chr12:123741398-123741746(+)$1	348	1	4	9.0000
CUC	chr11:57093840-57094053(-)$1	213	65	68	9.0000
CUC	chr22:41225546-41225779(-)$1	233	129	132	9.0000
CUC	chr1:153964440-153964658(+)$1	218	79	82	9.0000
CUC	chr3:5024779-5025016(+)$1	237	41	44	9.0000
CUC	chr6:33244069-33244303(+)$1	234	5	8	9.0000
CUC	chr22:20109685-20109895(+)$1	210	36	39	9.0000
CUC	chr15:64791635-64791902(+)$1	267	3	6	9.0000
CUC	chrX:53435941-53436240(-)$1	299	16	19	9.0000
CUC	chr6:26158296-26158612(+)$1	316	5	8	9.0000
CUC	chr15:69072370-69072583(-)$1	213	31	34	9.0000
CUC	chr13:98667702-98667995(+)$1	293	30	33	9.0000
CUC	chr1:154130033-154130299(-)$1	266	15	18	9.0000
CUC	chr2:232324878-232325101(-)$1	223	123	126	9.0000
CUC	chr8:56985627-56985887(-)$1	260	81	84	9.0000
CUC	chr1:180047566-180047850(+)$1	284	21	24	9.0000
CUC	chr7:148709246-148709552(-)$1	306	34	37	9.0000
CUC	chr1:45218807-45219026(+)$1	219	93	96	9.0000
CUC	chr19:6416419-6416647(-)$1	228	38	41	9.0000
CUC	chr14:102498588-102498797(+)$1	209	3	6	9.0000
CUC	chr8:117861099-117861369(-)$1	270	7	10	9.0000
CUC	chr19:49611041-49611334(+)$1	293	1	4	9.0000
CUC	chr19:10260507-10260743(-)$1	236	59	62	9.0000
CUC	chr20:34312489-34312744(-)$1	255	35	38	9.0000
CUC	chr17:37360696-37360909(+)$1	213	25	28	9.0000
CUC	chr10:93716183-93716455(+)$1	272	212	215	9.0000
CUC	chr12:76449734-76449948(-)$1	214	118	121	9.0000
CUC	chr4:6642558-6642834(+)$1	276	115	118	9.0000
CUC	chr11:118454520-118454780(+)$1	260	4	7	9.0000
CUC	chrX:53438881-53439144(-)$1	263	1	4	9.0000
CUC	chr6:31785187-31785541(+)$1	354	17	20	9.0000
CUC	chr15:50781898-50782170(+)$1	272	100	103	9.0000
CUC	chrX:15822141-15822430(+)$1	289	259	262	9.0000
CUC	chr20:30382176-30382438(+)$1	262	6	9	9.0000
CUC	chr2:101622377-101622623(+)$1	246	163	166	9.0000
CUC	chr19:11113603-11113912(+)$1	309	38	41	9.0000
CUC	chr17:26906721-26906954(-)$1	233	72	75	9.0000
CUC	chr7:104742285-104742586(+)$1	301	123	126	9.0000
CUC	chr12:14952471-14952756(-)$1	285	47	50	9.0000
CUC	chr2:232326475-232326714(-)$1	239	27	30	9.0000
CUC	chr2:153533864-153534067(-)$1	203	65	68	9.0000
CUC	chr5:140962710-140962958(-)$1	248	80	83	9.0000
CUC	chr1:55643546-55643901(-)$1	355	18	21	9.0000
CUC	chr1:36096774-36097040(-)$1	266	75	78	9.0000
CUC	chr5:33453324-33453618(+)$1	294	134	137	9.0000
CUC	chr1:93306068-93306281(+)$1	213	61	64	9.0000
CUC	chr19:41798095-41798337(+)$1	242	47	50	9.0000
CUC	chr8:42821515-42821810(+)$1	295	11	14	9.0000
CUC	chr17:48462381-48462663(-)$1	282	53	56	9.0000
CUC	chr5:149777903-149778115(+)$1	212	62	65	9.0000
CUC	chr20:62612536-62612753(+)$1	217	10	13	9.0000
CUC	chr17:57733234-57733488(+)$1	254	34	37	9.0000
CUC	chr18:47016792-47017023(-)$1	231	77	80	9.0000

#otherMatches

#Struct PSSM
:::	chr1:173456773-173457084(+)$1	311	1	4	9.0000
NNN	chr17:36955432-36955743(-)$1	311	22	25	9.0000
b]d	chr11:760139-760348(+)$1	209	25	28	9.0000
e!!	chr7:132481175-132481438(-)$1	263	73	76	9.0000
eee	chr5:137521564-137521839(+)$1	275	14	17	9.0000
ff4	chr3:185636052-185636309(-)$1	257	97	100	9.0000
F{B	chr9:134330423-134330654(+)$1	231	7	10	9.0000
CCD	chr9:131590910-131591221(-)$1	311	10	13	9.0000
fff	chr19:10291360-10291592(-)$1	232	55	58	9.0000
HHH	chr1:28564266-28564519(+)$1	253	29	32	9.0000
:::	chrX:77380345-77380617(+)$1	272	3	6	9.0000
:DD	chr6:44220693-44220916(+)$1	223	1	4	9.0000
ddd	chr20:39728722-39728958(+)$1	236	67	70	9.0000
dd:	chr8:117738155-117738512(-)$1	357	75	78	9.0000
fff	chr1:156287122-156287411(-)$1	289	115	118	9.0000
ffu	chr17:72205842-72206055(+)$1	213	11	14	9.0000
D{B	chr3:12881539-12881749(-)$1	210	22	25	9.0000
ff!	chr11:3023096-3023384(-)$1	288	64	67	9.0000
:ee	chr3:47663596-47663868(-)$1	272	80	83	9.0000
:ff	chr2:145146924-145147191(-)$1	267	92	95	9.0000
===	chr6:33243481-33243707(+)$1	226	78	81	9.0000
coo	chr19:46879659-46879919(+)$1	260	22	25	9.0000
ccc	chr2:198361786-198362109(-)$1	323	181	184	9.0000
ccc	chr8:124381235-124381467(-)$1	232	55	58	9.0000
QCC	chr6:44219388-44219621(+)$1	233	67	70	9.0000
FFF	chr6:133136023-133136319(+)$1	296	148	151	9.0000
bb]	chr3:184041255-184041479(+)$1	224	150	153	9.0000
ddd	chr22:30975023-30975294(-)$1	271	227	230	9.0000
:::	chr1:26227463-26227678(-)$1	215	9	12	9.0000
III	chr18:9533680-9533923(+)$1	243	6	9	9.0000
ffl	chr7:132523074-132523329(-)$1	255	102	105	9.0000
WWW	chr11:18422280-18422635(+)$1	355	97	100	9.0000
===	chr18:47015627-47015872(-)$1	245	31	34	9.0000
GGG	chr17:8396221-8396443(-)$1	222	3	6	9.0000
ccc	chr12:76446923-76447159(-)$1	236	143	146	9.0000
fff	chr16:11931787-11932056(-)$1	269	20	23	9.0000
hhh	chr22:29935223-29935556(-)$1	333	144	147	9.0000
FFF	chr12:56498364-56498687(+)$1	323	2	5	9.0000
ccq	chr1:245019105-245019327(-)$1	222	12	15	9.0000
ccc	chr17:1268116-1268406(-)$1	290	119	122	9.0000
:::	chr1:22054965-22055266(-)$1	301	286	289	9.0000
:::	chr1:45243263-45243520(+)$1	257	9	12	9.0000
:::	chr17:27011591-27011843(+)$1	252	0	3	9.0000
B{G	chr1:33252480-33252751(-)$1	271	29	32	9.0000
ggg	chr17:49337872-49338142(+)$1	270	57	60	9.0000
{II	chr1:205687326-205687667(-)$1	341	25	28	9.0000
vvv	chr1:45228130-45228416(+)$1	286	79	82	9.0000
:::	chr12:123741398-123741746(+)$1	348	1	4	9.0000
llb	chr11:57093840-57094053(-)$1	213	65	68	9.0000
ggo	chr22:41225546-41225779(-)$1	233	129	132	9.0000
:::	chr1:153964440-153964658(+)$1	218	79	82	9.0000
ddd	chr3:5024779-5025016(+)$1	237	41	44	9.0000
QQQ	chr6:33244069-33244303(+)$1	234	5	8	9.0000
ooo	chr22:20109685-20109895(+)$1	210	36	39	9.0000
DDD	chr15:64791635-64791902(+)$1	267	3	6	9.0000
FFF	chrX:53435941-53436240(-)$1	299	16	19	9.0000
cc'	chr6:26158296-26158612(+)$1	316	5	8	9.0000
ee!	chr15:69072370-69072583(-)$1	213	31	34	9.0000
hhh	chr13:98667702-98667995(+)$1	293	30	33	9.0000
G{E	chr1:154130033-154130299(-)$1	266	15	18	9.0000
ooo	chr2:232324878-232325101(-)$1	223	123	126	9.0000
qqq	chr8:56985627-56985887(-)$1	260	81	84	9.0000
c[d	chr1:180047566-180047850(+)$1	284	21	24	9.0000
ggg	chr7:148709246-148709552(-)$1	306	34	37	9.0000
nnn	chr1:45218807-45219026(+)$1	219	93	96	9.0000
fff	chr19:6416419-6416647(-)$1	228	38	41	9.0000
EEK	chr14:102498588-102498797(+)$1	209	3	6	9.0000
ddd	chr8:117861099-117861369(-)$1	270	7	10	9.0000
:EE	chr19:49611041-49611334(+)$1	293	1	4	9.0000
777	chr19:10260507-10260743(-)$1	236	59	62	9.0000
$gg	chr20:34312489-34312744(-)$1	255	35	38	9.0000
]gg	chr17:37360696-37360909(+)$1	213	25	28	9.0000
fff	chr10:93716183-93716455(+)$1	272	212	215	9.0000
::G	chr12:76449734-76449948(-)$1	214	118	121	9.0000
fff	chr4:6642558-6642834(+)$1	276	115	118	9.0000
E{B	chr11:118454520-118454780(+)$1	260	4	7	9.0000
DDD	chrX:53438881-53439144(-)$1	263	1	4	9.0000
GGG	chr6:31785187-31785541(+)$1	354	17	20	9.0000
gg2	chr15:50781898-50782170(+)$1	272	100	103	9.0000
JJJ	chrX:15822141-15822430(+)$1	289	259	262	9.0000
dd&	chr20:30382176-30382438(+)$1	262	6	9	9.0000
cc]	chr2:101622377-101622623(+)$1	246	163	166	9.0000
:dd	chr19:11113603-11113912(+)$1	309	38	41	9.0000
MMM	chr17:26906721-26906954(-)$1	233	72	75	9.0000
ggg	chr7:104742285-104742586(+)$1	301	123	126	9.0000
DDD	chr12:14952471-14952756(-)$1	285	47	50	9.0000
==)	chr2:232326475-232326714(-)$1	239	27	30	9.0000
ccb	chr2:153533864-153534067(-)$1	203	65	68	9.0000
e:F	chr5:140962710-140962958(-)$1	248	80	83	9.0000
ggg	chr1:55643546-55643901(-)$1	355	18	21	9.0000
c!!	chr1:36096774-36097040(-)$1	266	75	78	9.0000
::H	chr5:33453324-33453618(+)$1	294	134	137	9.0000
cmm	chr1:93306068-93306281(+)$1	213	61	64	9.0000
{BB	chr19:41798095-41798337(+)$1	242	47	50	9.0000
:::	chr8:42821515-42821810(+)$1	295	11	14	9.0000
eee	chr17:48462381-48462663(-)$1	282	53	56	9.0000
ccc	chr5:149777903-149778115(+)$1	212	62	65	9.0000
FFF	chr20:62612536-62612753(+)$1	217	10	13	9.0000
d::	chr17:57733234-57733488(+)$1	254	34	37	9.0000
uuu	chr18:47016792-47017023(-)$1	231	77	80	9.0000

#DB
...	chr1:173456773-173457084(+)$1	1	1	4	9.0000
...	chr17:36955432-36955743(-)$1	1	22	25	9.0000
).)	chr11:760139-760348(+)$1	1	25	28	9.0000
(..	chr7:132481175-132481438(-)$1	1	73	76	9.0000
(((	chr5:137521564-137521839(+)$1	1	14	17	9.0000
)).	chr3:185636052-185636309(-)$1	1	97	100	9.0000
(.(	chr9:134330423-134330654(+)$1	1	7	10	9.0000
(((	chr9:131590910-131591221(-)$1	1	10	13	9.0000
)))	chr19:10291360-10291592(-)$1	1	55	58	9.0000
(((	chr1:28564266-28564519(+)$1	1	29	32	9.0000
...	chrX:77380345-77380617(+)$1	1	3	6	9.0000
.((	chr6:44220693-44220916(+)$1	1	1	4	9.0000
)))	chr20:39728722-39728958(+)$1	1	67	70	9.0000
)).	chr8:117738155-117738512(-)$1	1	75	78	9.0000
(((	chr1:156287122-156287411(-)$1	1	115	118	9.0000
((.	chr17:72205842-72206055(+)$1	1	11	14	9.0000
(.(	chr3:12881539-12881749(-)$1	1	22	25	9.0000
((.	chr11:3023096-3023384(-)$1	1	64	67	9.0000
.((	chr3:47663596-47663868(-)$1	1	80	83	9.0000
.((	chr2:145146924-145147191(-)$1	1	92	95	9.0000
(((	chr6:33243481-33243707(+)$1	1	78	81	9.0000
(..	chr19:46879659-46879919(+)$1	1	22	25	9.0000
(((	chr2:198361786-198362109(-)$1	1	181	184	9.0000
(((	chr8:124381235-124381467(-)$1	1	55	58	9.0000
.((	chr6:44219388-44219621(+)$1	1	67	70	9.0000
)))	chr6:133136023-133136319(+)$1	1	148	151	9.0000
)).	chr3:184041255-184041479(+)$1	1	150	153	9.0000
)))	chr22:30975023-30975294(-)$1	1	227	230	9.0000
...	chr1:26227463-26227678(-)$1	1	9	12	9.0000
(((	chr18:9533680-9533923(+)$1	1	6	9	9.0000
((.	chr7:132523074-132523329(-)$1	1	102	105	9.0000
...	chr11:18422280-18422635(+)$1	1	97	100	9.0000
(((	chr18:47015627-47015872(-)$1	1	31	34	9.0000
(((	chr17:8396221-8396443(-)$1	1	3	6	9.0000
)))	chr12:76446923-76447159(-)$1	1	143	146	9.0000
(((	chr16:11931787-11932056(-)$1	1	20	23	9.0000
)))	chr22:29935223-29935556(-)$1	1	144	147	9.0000
(((	chr12:56498364-56498687(+)$1	1	2	5	9.0000
((.	chr1:245019105-245019327(-)$1	1	12	15	9.0000
(((	chr17:1268116-1268406(-)$1	1	119	122	9.0000
...	chr1:22054965-22055266(-)$1	1	286	289	9.0000
...	chr1:45243263-45243520(+)$1	1	9	12	9.0000
...	chr17:27011591-27011843(+)$1	1	0	3	9.0000
(.(	chr1:33252480-33252751(-)$1	1	29	32	9.0000
(((	chr17:49337872-49338142(+)$1	1	57	60	9.0000
.((	chr1:205687326-205687667(-)$1	1	25	28	9.0000
...	chr1:45228130-45228416(+)$1	1	79	82	9.0000
...	chr12:123741398-123741746(+)$1	1	1	4	9.0000
..)	chr11:57093840-57094053(-)$1	1	65	68	9.0000
((.	chr22:41225546-41225779(-)$1	1	129	132	9.0000
...	chr1:153964440-153964658(+)$1	1	79	82	9.0000
(((	chr3:5024779-5025016(+)$1	1	41	44	9.0000
...	chr6:33244069-33244303(+)$1	1	5	8	9.0000
...	chr22:20109685-20109895(+)$1	1	36	39	9.0000
(((	chr15:64791635-64791902(+)$1	1	3	6	9.0000
(((	chrX:53435941-53436240(-)$1	1	16	19	9.0000
((.	chr6:26158296-26158612(+)$1	1	5	8	9.0000
((.	chr15:69072370-69072583(-)$1	1	31	34	9.0000
)))	chr13:98667702-98667995(+)$1	1	30	33	9.0000
(.(	chr1:154130033-154130299(-)$1	1	15	18	9.0000
...	chr2:232324878-232325101(-)$1	1	123	126	9.0000
...	chr8:56985627-56985887(-)$1	1	81	84	9.0000
(.(	chr1:180047566-180047850(+)$1	1	21	24	9.0000
(((	chr7:148709246-148709552(-)$1	1	34	37	9.0000
...	chr1:45218807-45219026(+)$1	1	93	96	9.0000
)))	chr19:6416419-6416647(-)$1	1	38	41	9.0000
((.	chr14:102498588-102498797(+)$1	1	3	6	9.0000
(((	chr8:117861099-117861369(-)$1	1	7	10	9.0000
.((	chr19:49611041-49611334(+)$1	1	1	4	9.0000
...	chr19:10260507-10260743(-)$1	1	59	62	9.0000
.((	chr20:34312489-34312744(-)$1	1	35	38	9.0000
.))	chr17:37360696-37360909(+)$1	1	25	28	9.0000
(((	chr10:93716183-93716455(+)$1	1	212	215	9.0000
..(	chr12:76449734-76449948(-)$1	1	118	121	9.0000
)))	chr4:6642558-6642834(+)$1	1	115	118	9.0000
(.(	chr11:118454520-118454780(+)$1	1	4	7	9.0000
(((	chrX:53438881-53439144(-)$1	1	1	4	9.0000
(((	chr6:31785187-31785541(+)$1	1	17	20	9.0000
)).	chr15:50781898-50782170(+)$1	1	100	103	9.0000
)))	chrX:15822141-15822430(+)$1	1	259	262	9.0000
((.	chr20:30382176-30382438(+)$1	1	6	9	9.0000
)).	chr2:101622377-101622623(+)$1	1	163	166	9.0000
.((	chr19:11113603-11113912(+)$1	1	38	41	9.0000
...	chr17:26906721-26906954(-)$1	1	72	75	9.0000
)))	chr7:104742285-104742586(+)$1	1	123	126	9.0000
(((	chr12:14952471-14952756(-)$1	1	47	50	9.0000
((.	chr2:232326475-232326714(-)$1	1	27	30	9.0000
)))	chr2:153533864-153534067(-)$1	1	65	68	9.0000
).(	chr5:140962710-140962958(-)$1	1	80	83	9.0000
(((	chr1:55643546-55643901(-)$1	1	18	21	9.0000
(..	chr1:36096774-36097040(-)$1	1	75	78	9.0000
..(	chr5:33453324-33453618(+)$1	1	134	137	9.0000
(..	chr1:93306068-93306281(+)$1	1	61	64	9.0000
.((	chr19:41798095-41798337(+)$1	1	47	50	9.0000
...	chr8:42821515-42821810(+)$1	1	11	14	9.0000
)))	chr17:48462381-48462663(-)$1	1	53	56	9.0000
(((	chr5:149777903-149778115(+)$1	1	62	65	9.0000
(((	chr20:62612536-62612753(+)$1	1	10	13	9.0000
)..	chr17:57733234-57733488(+)$1	1	34	37	9.0000
...	chr18:47016792-47017023(-)$1	1	77	80	9.0000

#PSSM
C : 0.97	c : 0.03	
U : 0.97	u : 0.03	
C : 0.97	c : 0.03	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_UTR_m2_run2.nuc.txt

#NT
gAG	chr11:46403262-46403525(+)$1	263	15	18	9.0000
GAG	chr20:34220505-34220766(-)$1	261	30	33	9.0000
GAG	chr7:150038499-150038755(-)$1	256	2	5	9.0000
GAG	chr2:170551107-170551356(+)$1	249	31	34	9.0000
GAG	chr16:1820867-1821170(-)$1	303	4	7	9.0000
GAG	chr17:4800061-4800329(+)$1	268	6	9	9.0000
GAG	chr1:3383395-3383639(+)$1	244	4	7	9.0000
GAG	chr11:61573894-61574182(-)$1	288	49	52	9.0000
GAG	chr17:40266154-40266400(-)$1	246	17	20	9.0000
GAG	chr2:238494432-238494803(-)$1	371	140	143	9.0000
GAG	chr20:62338869-62339164(-)$1	295	0	3	9.0000
GAG	chr5:179251028-179251325(+)$1	297	56	59	9.0000
GAG	chr16:47006739-47006999(-)$1	260	46	49	9.0000
GAG	chr19:15233928-15234192(-)$1	264	9	12	9.0000
GAG	chr7:150774786-150775042(-)$1	256	29	32	9.0000
GAG	chr3:15901006-15901290(-)$1	284	53	56	9.0000
GAG	chr9:139743358-139743598(+)$1	240	3	6	9.0000
GAG	chr19:35500226-35500463(+)$1	237	33	36	9.0000
GAG	chr19:50166651-50166919(-)$1	268	31	34	9.0000
GAG	chr16:70584428-70584701(+)$1	273	11	14	9.0000
GAG	chrX:153059350-153059691(-)$1	341	4	7	9.0000
GAG	chr7:23571268-23571560(-)$1	292	70	73	9.0000
gag	chr14:23790784-23791052(+)$1	268	2	5	9.0000
GAG	chr20:62338711-62338952(-)$1	241	65	68	9.0000
GAG	chr17:74732724-74732960(-)$1	236	71	74	9.0000
GAG	chr1:11866352-11866618(+)$1	266	24	27	9.0000
gag	chr8:102217339-102217604(-)$1	265	47	50	9.0000
GAG	chr20:34252570-34252809(-)$1	239	6	9	9.0000
GAG	chr9:130214402-130214644(+)$1	242	31	34	9.0000
GAG	chr3:184045466-184045731(+)$1	265	37	40	9.0000
GAG	chr17:42272358-42272615(-)$1	257	60	63	9.0000
GAG	chr5:179044830-179045075(-)$1	245	20	23	9.0000
GAG	chr16:2024255-2024529(+)$1	274	25	28	9.0000
GAG	chr7:6523100-6523359(-)$1	259	8	11	9.0000
GAG	chr20:62331752-62332044(-)$1	292	54	57	9.0000
GAG	chr10:121355814-121356082(-)$1	268	20	23	9.0000
GAG	chr2:29118005-29118235(+)$1	230	9	12	9.0000
GAG	chr17:79865258-79865580(-)$1	322	66	69	9.0000
GAG	chr13:50571171-50571423(+)$1	252	6	9	9.0000
GAG	chr8:11725326-11725581(-)$1	255	74	77	9.0000
GAG	chr20:61438739-61439035(+)$1	296	5	8	9.0000
GAG	chr2:235860613-235860864(+)$1	251	34	37	9.0000
GAG	chr2:120124590-120124863(+)$1	273	15	18	9.0000
GAG	chr11:65318817-65319137(-)$1	320	9	12	9.0000
GAG	chr17:79868956-79869200(-)$1	244	5	8	9.0000
GAG	chr17:79650981-79651237(+)$1	256	27	30	9.0000
GAG	chr7:143078455-143078760(+)$1	305	5	8	9.0000
GAG	chr16:88780813-88781097(+)$1	284	113	116	9.0000
GAG	chr17:79866836-79867108(-)$1	272	11	14	9.0000
GAG	chr17:80014562-80014824(+)$1	262	14	17	9.0000
GAG	chr5:138629432-138629701(+)$1	269	22	25	9.0000
GAG	chr12:117479535-117479901(-)$1	366	17	20	9.0000
GAG	chr18:48556770-48557003(+)$1	233	9	12	9.0000
gAG	chr19:11071815-11072102(+)$1	287	78	81	9.0000
GAG	chr2:242694806-242695069(+)$1	263	6	9	9.0000
GAG	chr14:24610481-24610742(-)$1	261	47	50	9.0000
GAG	chrX:20284742-20284961(-)$1	219	38	41	9.0000
GAG	chr22:50684153-50684431(-)$1	278	70	73	9.0000
GAG	chr8:144679178-144679506(-)$1	328	15	18	9.0000
GAG	chr9:116999853-117000108(+)$1	255	98	101	9.0000
GAG	chr19:36104558-36104792(+)$1	234	16	19	9.0000
GAG	chr17:17722912-17723152(-)$1	240	42	45	9.0000
GAG	chr10:124134247-124134522(+)$1	275	19	22	9.0000
GAG	chr10:101189955-101190323(-)$1	368	25	28	9.0000
GAG	chrX:122994081-122994389(+)$1	308	18	21	9.0000
GAG	chr20:60963364-60963610(+)$1	246	3	6	9.0000
GAG	chr16:88922819-88923088(-)$1	269	25	28	9.0000
GAG	chr5:176980287-176980569(-)$1	282	51	54	9.0000
GAG	chr15:69075120-69075400(-)$1	280	7	10	9.0000
GAG	chr19:53589410-53589650(-)$1	240	93	96	9.0000
GAG	chr11:75161664-75161922(-)$1	258	4	7	9.0000
GAG	chr19:1271923-1272185(+)$1	262	4	7	9.0000
gag	chr17:61905251-61905513(+)$1	262	29	32	9.0000
GAG	chr16:89786875-89787139(-)$1	264	1	4	9.0000
GAG	chr7:5569493-5569764(-)$1	271	164	167	9.0000
gag	chr5:133340102-133340396(-)$1	294	35	38	9.0000
GAG	chr17:30697028-30697287(+)$1	259	165	168	9.0000
GAG	chr4:1377768-1378030(+)$1	262	7	10	9.0000
gag	chr12:1025282-1025587(-)$1	305	20	23	9.0000
GAG	chr9:117031399-117031674(+)$1	275	39	42	9.0000
GAG	chr17:39975648-39975900(+)$1	252	8	11	9.0000
GAG	chr7:99156315-99156626(+)$1	311	24	27	9.0000
GAG	chr9:130712556-130712830(-)$1	274	39	42	9.0000
GAG	chr16:84215348-84215621(-)$1	273	68	71	9.0000
GAG	chr20:34220181-34220425(-)$1	244	30	33	9.0000
GAG	chr12:113616712-113617026(-)$1	314	41	44	9.0000
GAG	chr1:249151736-249152023(-)$1	287	20	23	9.0000
GAG	chr11:67160113-67160379(+)$1	266	142	145	9.0000
GAG	chr13:50571223-50571538(+)$1	315	5	8	9.0000
GAG	chr14:89029743-89030029(+)$1	286	9	12	9.0000
GAG	chr16:30077464-30077697(+)$1	233	3	6	9.0000
GAG	chr1:228584506-228584921(-)$1	415	3	6	9.0000
GAG	chr19:46026991-46027250(+)$1	259	8	11	9.0000
GAG	chr19:1104352-1104631(+)$1	279	134	137	9.0000

#otherMatches

#Struct PSSM
DDD	chr4:667532-667796(-)$1	264	0	3	9.0000
GGG	chr11:46403262-46403525(+)$1	263	15	18	9.0000
===	chr20:34220505-34220766(-)$1	261	30	33	9.0000
:::	chr7:150038499-150038755(-)$1	256	2	5	9.0000
555	chr2:170551107-170551356(+)$1	249	31	34	9.0000
::a	chr16:1820867-1821170(-)$1	303	4	7	9.0000
eee	chr17:4800061-4800329(+)$1	268	6	9	9.0000
GGG	chr1:3383395-3383639(+)$1	244	4	7	9.0000
!cc	chr11:61573894-61574182(-)$1	288	49	52	9.0000
HH:	chr17:40266154-40266400(-)$1	246	17	20	9.0000
fff	chr2:238494432-238494803(-)$1	371	140	143	9.0000
:::	chr20:62338869-62339164(-)$1	295	0	3	9.0000
ccc	chr5:179251028-179251325(+)$1	297	56	59	9.0000
h]b	chr16:47006739-47006999(-)$1	260	46	49	9.0000
nne	chr19:15233928-15234192(-)$1	264	9	12	9.0000
g[d	chr7:150774786-150775042(-)$1	256	29	32	9.0000
III	chr3:15901006-15901290(-)$1	284	53	56	9.0000
mmm	chr9:139743358-139743598(+)$1	240	3	6	9.0000
ddc	chr19:35500226-35500463(+)$1	237	33	36	9.0000
ddd	chr19:50166651-50166919(-)$1	268	31	34	9.0000
mee	chr16:70584428-70584701(+)$1	273	11	14	9.0000
:::	chrX:153059350-153059691(-)$1	341	4	7	9.0000
bb]	chr7:23571268-23571560(-)$1	292	70	73	9.0000
c""	chr14:23790784-23791052(+)$1	268	2	5	9.0000
amm	chr20:62338711-62338952(-)$1	241	65	68	9.0000
]ff	chr17:74732724-74732960(-)$1	236	71	74	9.0000
nnc	chr1:11866352-11866618(+)$1	266	24	27	9.0000
dd!	chr8:102217339-102217604(-)$1	265	47	50	9.0000
BKK	chr20:34252570-34252809(-)$1	239	6	9	9.0000
ppp	chr9:130214402-130214644(+)$1	242	31	34	9.0000
AKK	chr3:184045466-184045731(+)$1	265	37	40	9.0000
E{A	chr17:42272358-42272615(-)$1	257	60	63	9.0000
DDF	chr5:179044830-179045075(-)$1	245	20	23	9.0000
E{C	chr16:2024255-2024529(+)$1	274	25	28	9.0000
D{B	chr7:6523100-6523359(-)$1	259	8	11	9.0000
fmm	chr20:62331752-62332044(-)$1	292	54	57	9.0000
EEE	chr10:121355814-121356082(-)$1	268	20	23	9.0000
ddd	chr2:29118005-29118235(+)$1	230	9	12	9.0000
DD{	chr17:79865258-79865580(-)$1	322	66	69	9.0000
FLL	chr13:50571171-50571423(+)$1	252	6	9	9.0000
A{D	chr8:11725326-11725581(-)$1	255	74	77	9.0000
EEE	chr20:61438739-61439035(+)$1	296	5	8	9.0000
22c	chr2:235860613-235860864(+)$1	251	34	37	9.0000
bb!	chr2:120124590-120124863(+)$1	273	15	18	9.0000
LLL	chr11:65318817-65319137(-)$1	320	9	12	9.0000
DDD	chr17:79868956-79869200(-)$1	244	5	8	9.0000
:::	chr17:79650981-79651237(+)$1	256	27	30	9.0000
f""	chr7:143078455-143078760(+)$1	305	5	8	9.0000
JJJ	chr16:88780813-88781097(+)$1	284	113	116	9.0000
FFF	chr17:79866836-79867108(-)$1	272	11	14	9.0000
!dd	chr17:80014562-80014824(+)$1	262	14	17	9.0000
ggg	chr5:138629432-138629701(+)$1	269	22	25	9.0000
[bb	chr12:117479535-117479901(-)$1	366	17	20	9.0000
c[a	chr18:48556770-48557003(+)$1	233	9	12	9.0000
:::	chr19:11071815-11072102(+)$1	287	78	81	9.0000
GDD	chr2:242694806-242695069(+)$1	263	6	9	9.0000
D{C	chr14:24610481-24610742(-)$1	261	47	50	9.0000
"""	chrX:20284742-20284961(-)$1	219	38	41	9.0000
22b	chr22:50684153-50684431(-)$1	278	70	73	9.0000
b!!	chr8:144679178-144679506(-)$1	328	15	18	9.0000
fff	chr9:116999853-117000108(+)$1	255	98	101	9.0000
QQE	chr19:36104558-36104792(+)$1	234	16	19	9.0000
::f	chr17:17722912-17723152(-)$1	240	42	45	9.0000
::e	chr10:124134247-124134522(+)$1	275	19	22	9.0000
ddd	chr10:101189955-101190323(-)$1	368	25	28	9.0000
::c	chrX:122994081-122994389(+)$1	308	18	21	9.0000
ggg	chr20:60963364-60963610(+)$1	246	3	6	9.0000
BBK	chr16:88922819-88923088(-)$1	269	25	28	9.0000
ooo	chr5:176980287-176980569(-)$1	282	51	54	9.0000
&&&	chr15:69075120-69075400(-)$1	280	7	10	9.0000
eHH	chr19:53589410-53589650(-)$1	240	93	96	9.0000
GGG	chr11:75161664-75161922(-)$1	258	4	7	9.0000
{DD	chr19:1271923-1272185(+)$1	262	4	7	9.0000
DDD	chr17:61905251-61905513(+)$1	262	29	32	9.0000
:::	chr16:89786875-89787139(-)$1	264	1	4	9.0000
}CC	chr7:5569493-5569764(-)$1	271	164	167	9.0000
KKG	chr5:133340102-133340396(-)$1	294	35	38	9.0000
bb[	chr17:30697028-30697287(+)$1	259	165	168	9.0000
KKH	chr4:1377768-1378030(+)$1	262	7	10	9.0000
HHH	chr12:1025282-1025587(-)$1	305	20	23	9.0000
)))	chr9:117031399-117031674(+)$1	275	39	42	9.0000
::D	chr17:39975648-39975900(+)$1	252	8	11	9.0000
ooa	chr7:99156315-99156626(+)$1	311	24	27	9.0000
fff	chr9:130712556-130712830(-)$1	274	39	42	9.0000
fff	chr16:84215348-84215621(-)$1	273	68	71	9.0000
ooo	chr20:34220181-34220425(-)$1	244	30	33	9.0000
eee	chr12:113616712-113617026(-)$1	314	41	44	9.0000
HHH	chr1:249151736-249152023(-)$1	287	20	23	9.0000
eee	chr11:67160113-67160379(+)$1	266	142	145	9.0000
EEE	chr13:50571223-50571538(+)$1	315	5	8	9.0000
!dd	chr14:89029743-89030029(+)$1	286	9	12	9.0000
{CC	chr16:30077464-30077697(+)$1	233	3	6	9.0000
eee	chr1:228584506-228584921(-)$1	415	3	6	9.0000
hhh	chr19:46026991-46027250(+)$1	259	8	11	9.0000
[cc	chr19:1104352-1104631(+)$1	279	134	137	9.0000

#DB
(((	chr4:667532-667796(-)$1	1	0	3	9.0000
(((	chr11:46403262-46403525(+)$1	1	15	18	9.0000
)))	chr20:34220505-34220766(-)$1	1	30	33	9.0000
...	chr7:150038499-150038755(-)$1	1	2	5	9.0000
...	chr2:170551107-170551356(+)$1	1	31	34	9.0000
..(	chr16:1820867-1821170(-)$1	1	4	7	9.0000
(((	chr17:4800061-4800329(+)$1	1	6	9	9.0000
(((	chr1:3383395-3383639(+)$1	1	4	7	9.0000
.((	chr11:61573894-61574182(-)$1	1	49	52	9.0000
((.	chr17:40266154-40266400(-)$1	1	17	20	9.0000
)))	chr2:238494432-238494803(-)$1	1	140	143	9.0000
...	chr20:62338869-62339164(-)$1	1	0	3	9.0000
)))	chr5:179251028-179251325(+)$1	1	56	59	9.0000
).)	chr16:47006739-47006999(-)$1	1	46	49	9.0000
..)	chr19:15233928-15234192(-)$1	1	9	12	9.0000
(.(	chr7:150774786-150775042(-)$1	1	29	32	9.0000
(((	chr3:15901006-15901290(-)$1	1	53	56	9.0000
...	chr9:139743358-139743598(+)$1	1	3	6	9.0000
(((	chr19:35500226-35500463(+)$1	1	33	36	9.0000
(((	chr19:50166651-50166919(-)$1	1	31	34	9.0000
.))	chr16:70584428-70584701(+)$1	1	11	14	9.0000
...	chrX:153059350-153059691(-)$1	1	4	7	9.0000
)).	chr7:23571268-23571560(-)$1	1	70	73	9.0000
(..	chr14:23790784-23791052(+)$1	1	2	5	9.0000
(..	chr20:62338711-62338952(-)$1	1	65	68	9.0000
.))	chr17:74732724-74732960(-)$1	1	71	74	9.0000
..)	chr1:11866352-11866618(+)$1	1	24	27	9.0000
((.	chr8:102217339-102217604(-)$1	1	47	50	9.0000
(..	chr20:34252570-34252809(-)$1	1	6	9	9.0000
...	chr9:130214402-130214644(+)$1	1	31	34	9.0000
(..	chr3:184045466-184045731(+)$1	1	37	40	9.0000
(.(	chr17:42272358-42272615(-)$1	1	60	63	9.0000
(((	chr5:179044830-179045075(-)$1	1	20	23	9.0000
(.(	chr16:2024255-2024529(+)$1	1	25	28	9.0000
(.(	chr7:6523100-6523359(-)$1	1	8	11	9.0000
(..	chr20:62331752-62332044(-)$1	1	54	57	9.0000
(((	chr10:121355814-121356082(-)$1	1	20	23	9.0000
)))	chr2:29118005-29118235(+)$1	1	9	12	9.0000
((.	chr17:79865258-79865580(-)$1	1	66	69	9.0000
(..	chr13:50571171-50571423(+)$1	1	6	9	9.0000
(.(	chr8:11725326-11725581(-)$1	1	74	77	9.0000
(((	chr20:61438739-61439035(+)$1	1	5	8	9.0000
..)	chr2:235860613-235860864(+)$1	1	34	37	9.0000
((.	chr2:120124590-120124863(+)$1	1	15	18	9.0000
...	chr11:65318817-65319137(-)$1	1	9	12	9.0000
(((	chr17:79868956-79869200(-)$1	1	5	8	9.0000
...	chr17:79650981-79651237(+)$1	1	27	30	9.0000
(..	chr7:143078455-143078760(+)$1	1	5	8	9.0000
(((	chr16:88780813-88781097(+)$1	1	113	116	9.0000
(((	chr17:79866836-79867108(-)$1	1	11	14	9.0000
.((	chr17:80014562-80014824(+)$1	1	14	17	9.0000
(((	chr5:138629432-138629701(+)$1	1	22	25	9.0000
.((	chr12:117479535-117479901(-)$1	1	17	20	9.0000
(.(	chr18:48556770-48557003(+)$1	1	9	12	9.0000
...	chr19:11071815-11072102(+)$1	1	78	81	9.0000
(((	chr2:242694806-242695069(+)$1	1	6	9	9.0000
(.(	chr14:24610481-24610742(-)$1	1	47	50	9.0000
...	chrX:20284742-20284961(-)$1	1	38	41	9.0000
..)	chr22:50684153-50684431(-)$1	1	70	73	9.0000
(..	chr8:144679178-144679506(-)$1	1	15	18	9.0000
(((	chr9:116999853-117000108(+)$1	1	98	101	9.0000
..(	chr19:36104558-36104792(+)$1	1	16	19	9.0000
..(	chr17:17722912-17723152(-)$1	1	42	45	9.0000
..(	chr10:124134247-124134522(+)$1	1	19	22	9.0000
(((	chr10:101189955-101190323(-)$1	1	25	28	9.0000
..(	chrX:122994081-122994389(+)$1	1	18	21	9.0000
(((	chr20:60963364-60963610(+)$1	1	3	6	9.0000
((.	chr16:88922819-88923088(-)$1	1	25	28	9.0000
...	chr5:176980287-176980569(-)$1	1	51	54	9.0000
...	chr15:69075120-69075400(-)$1	1	7	10	9.0000
)((	chr19:53589410-53589650(-)$1	1	93	96	9.0000
(((	chr11:75161664-75161922(-)$1	1	4	7	9.0000
.((	chr19:1271923-1272185(+)$1	1	4	7	9.0000
(((	chr17:61905251-61905513(+)$1	1	29	32	9.0000
...	chr16:89786875-89787139(-)$1	1	1	4	9.0000
.))	chr7:5569493-5569764(-)$1	1	164	167	9.0000
..(	chr5:133340102-133340396(-)$1	1	35	38	9.0000
((.	chr17:30697028-30697287(+)$1	1	165	168	9.0000
..(	chr4:1377768-1378030(+)$1	1	7	10	9.0000
(((	chr12:1025282-1025587(-)$1	1	20	23	9.0000
...	chr9:117031399-117031674(+)$1	1	39	42	9.0000
..(	chr17:39975648-39975900(+)$1	1	8	11	9.0000
..)	chr7:99156315-99156626(+)$1	1	24	27	9.0000
)))	chr9:130712556-130712830(-)$1	1	39	42	9.0000
(((	chr16:84215348-84215621(-)$1	1	68	71	9.0000
...	chr20:34220181-34220425(-)$1	1	30	33	9.0000
)))	chr12:113616712-113617026(-)$1	1	41	44	9.0000
(((	chr1:249151736-249152023(-)$1	1	20	23	9.0000
(((	chr11:67160113-67160379(+)$1	1	142	145	9.0000
(((	chr13:50571223-50571538(+)$1	1	5	8	9.0000
.((	chr14:89029743-89030029(+)$1	1	9	12	9.0000
.((	chr16:30077464-30077697(+)$1	1	3	6	9.0000
(((	chr1:228584506-228584921(-)$1	1	3	6	9.0000
(((	chr19:46026991-46027250(+)$1	1	8	11	9.0000
.((	chr19:1104352-1104631(+)$1	1	134	137	9.0000

#PSSM
G : 0.92	g : 0.07	
A : 0.94	a : 0.05	
G : 0.94	g : 0.05	

#score	855.0000000000001
#seq	95
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_UTR_m3_run2.nuc.txt

#NT
CGCGCggcggaggccgagggggcgccggggcccggggcgcgcag	chr18:8609556-8609822(+)$1	266	73	117	26.3333
GGCGGGCGGGGGGAUUCGCGGUGGGCGCGGGCGCGGAGCGGAAG	chr5:74162100-74162384(-)$1	284	103	147	21.1111
ggggcgaggagaggaggggGUGACGCUGGGGGGCGCCGUGGUGG	chr20:57467330-57467613(+)$1	283	90	134	19.3333
GGGGUGGGGGACCCGGCGGGGGCGGCGGUCCAGCCGGGGGACAG	chr17:38334121-38334368(+)$1	247	99	143	20.3333
AGGAGGCAGGCGACGGAGGCGCGGAGGGUGCGGGGCGCAGGCGG	chr2:54087066-54087331(-)$1	265	111	155	22.6666
gggccgccggggccaugcgcgcgggcugggcagggggccggcgg	chr2:42275202-42275460(+)$1	258	3	47	30.7777
CGGCCGGCAGAGCGGCGUCGGCGGGGUUGGCCGGGGCGGUGUGG	chr3:33481595-33481861(-)$1	266	11	55	24.3333
ggggcgaagggggccgagcggcgggccgggccgggccgggcagg	chr20:57267709-57267987(+)$1	278	179	223	43.8888
ggggcgaagggggccgagcggcgggccgggccgggccgggcagg	chr20:57267787-57268055(+)$1	268	101	145	43.8888
CGGGAGCCUGGGCGUUAggcccgggcguggcggggccccggcgg	chr2:242447564-242447835(-)$1	271	136	180	27.6666
GGGUCGGCAGAGGCGGAGCUGGGGCACUGGGGGUCAGGGGUCGG	chr12:132414113-132414376(+)$1	263	73	117	20.4444
GAggcggcggcggcggcgcugggggccgcugggcgcccggccUG	chr17:33416031-33416305(-)$1	274	187	231	24.6666
cccgugacggcccccgcgcgcgccggggggcggggcggggccgg	chr19:42788418-42788702(+)$1	284	153	197	23.4444
ccgggcggggcgggggUACGUGGAGCGGGGCCGGGCUGGGGAGC	chr3:197024613-197024855(-)$1	242	81	125	21.4444
ggugcggcggcggcggcgcggagcgcggcggcaggaggaggguu	chr22:41488389-41488640(+)$1	251	58	102	18.7777
AGGAAGGAGGAGAGCCGGCGGGGGUCGCGGAGGAGCCGGGCAGC	chr17:38334271-38334518(+)$1	247	89	133	19.1111
cgggcggcggggcgcgcgggccaggcggggccgggcggcggcag	chr8:8243852-8244099(-)$1	247	6	50	38.8888
GGAGCCAGGAGGGGCGGGAGACGGGCGGGUAUGGGCCGCGCGGG	chr19:1104601-1104871(+)$1	270	102	146	21.0000
gcggggaaggcaggggaggggagggcaaggcgcggcgggggagg	chr2:191513652-191513915(+)$1	263	102	146	27.2222
CGGGAGCCUGGGCGUUAggcccgggcguggcggggccccggcgg	chr2:242447635-242447907(-)$1	272	208	252	27.6666
GCGGCGGCGGUGGCGGCGCUGCAGCAGCGGGCGGGACUGGUAUG	chr5:179921609-179921883(+)$1	274	29	73	20.2222
CGGGCGGGCGCgcagcagcagcggggcggccgaggcaguagcgg	chr5:92920301-92920549(+)$1	248	186	230	20.3333
gggcggagcgguggaucggcgagcggcgggacgggguggguggg	chr1:155947805-155948094(-)$1	289	48	92	17.1111
ccgccgccgccgccgccgcugccgUGGGGCUCgggcggcgacgg	chrX:20284769-20284985(-)$1	216	125	169	20.5555
gggugcggggccugcgggcggcggcccgggcggAGCGUUGGAGG	chr11:65339918-65340202(+)$1	284	141	185	21.4444
ggggcgcgcggggcggcggcgggggccgggggggcccgggcgcg	chr1:2160039-2160323(+)$1	284	86	130	31.7777
uggcgggcgggggcuggcgcgggguggcgggcgggggcuggcgc	chr2:95825186-95825454(-)$1	268	39	83	20.4444
CGGGCAGUGGAGGUGCCGCGGCGGCCGUGGCCGCUCGGGGCGCA	chr2:159314472-159314726(+)$1	254	115	159	18.8888
ggggcggaggccgcgcggaccggggcgggcggagcggagcucgg	chr13:113863704-113864033(+)$1	329	148	192	17.4444
GGGGUGGGGCGGGUUUUGGUGGGGGCGGGGCAAAGGGCUAGGGG	chr19:50815984-50816227(-)$1	243	73	117	17.2222
CCGCGGGCGGGAGGCCUUUGUGGGGCGGGCACGUGGGGCGCUGG	chr12:131356942-131357208(+)$1	266	71	115	18.6666
ccgccgccgccgccgccgcugccgUGGGGCUCgggcggcgacgg	chrX:20284785-20285011(-)$1	226	151	195	20.5555
cgcccGCCGGACUCCGCGAGGGAGGAGGGAGAGGGAGGGGGCGG	chr19:42788308-42788565(+)$1	257	194	238	22.2222
gcggggagggggcgcaggaagcgggcgaggccgggcgcgggagg	chr19:3062229-3062530(-)$1	301	166	210	30.2222
CUgccgggcagggccggggcggugccgaggccgggccggagcgg	chr20:57267624-57267893(+)$1	269	222	266	22.7777
gggaccgagccgggagggccaggggcuggucugggccgggGCGG	chr16:87426130-87426483(+)$1	353	122	166	24.6666
GGGCCGUCUGCCCCUGAGGUGGGGGCUGGGCUGGAGCAGGCUGC	chr2:202001718-202002047(+)$1	329	195	239	18.5555
GGGCAGCCGGUGCGGCGGGGUCGCCACGGCCAGGGGAGCGCUGG	chr1:90308912-90309166(+)$1	254	111	155	17.4444
CCGCGGGCGGGAGGCCUUUGUGGGGCGGGCACGUGGGGCGCUGG	chr12:131356824-131357101(+)$1	277	189	233	18.6666
cgagggggcgggacagaggagaggcggggccugggcggggcggg	chr8:12990823-12991137(-)$1	314	95	139	23.2222
gggcggacggaaccaccggggcggggugggagguaacgggacgg	chr17:36955687-36955938(-)$1	251	95	139	22.2222
gggcggccgaggcaguagcggcggcagcggcggcggcggcggag	chr5:92920398-92920634(+)$1	236	112	156	18.8888
GGGGCGACGGAGGCCACGUGGCCGGCUUGGAGGGCGUCCGCGGG	chr8:144679174-144679420(-)$1	246	84	128	23.1111
cgggcggcgggcggcgcgcggugggcauggcgggugcggggcug	chr3:52567609-52567899(-)$1	290	120	164	32.2222

#otherMatches

#Struct PSSM
dnnnnndddd666666eeeee:bb[a[eeeeemmmmeeeee]a]	chr12:131356618-131356923(+)$1	305	164	208	23.6666
]bb]dddd333a]ccc22ffffffddddffffff:a[ccc[a[c	chr18:8609556-8609822(+)$1	266	73	117	26.3333
[ccc!!bb[bbmmmmbb]bb55555ccc]==========:::cc	chr5:74162100-74162384(-)$1	284	103	147	21.1111
333ccc666666eeeeedddd22a]bb::::::ddddnnnnndd	chr20:57467330-57467613(+)$1	283	90	134	19.3333
iiiiiii####ffffff"""eeeee[bb!!a!!hhhhhhhh[ee	chr17:38334121-38334368(+)$1	247	99	143	20.3333
{DDDD{A{CCCMMMMGGGGGGGLLLHHHHHHHHGGGGGGGDDDD	chr2:54087066-54087331(-)$1	265	111	155	22.6666
bb[ddddbb[ammmma]bb]dddd]bb]a:HHHHHHHH{CCC::	chr2:42275202-42275460(+)$1	258	3	47	30.7777
CC{EEEEELLLCCC{CCC{DDDD:dddd[ccc[ddddddddlll	chr3:33481595-33481861(-)$1	266	11	55	24.3333
ddcccpppppppcccCCC}AEEEEE}FFFFFF}JJJJJJJJJJJ	chr20:57267709-57267987(+)$1	278	179	223	43.8888
BBBB{A{BBKKA{IIIIIIIIIbb[ccc[ccc[ddddooooood	chr20:57267787-57268055(+)$1	268	101	145	43.8888
a::::hhhhhhhhnnnnnhhhhhhhhBB}BBZZZEEEEE}BBYY	chr2:242447564-242447835(-)$1	271	136	180	27.6666
eeeeffffff[a==========ccc[bb!!a[a[dddd!!dddd	chr12:132414113-132414376(+)$1	263	73	117	20.4444
iiiiiiIIIIIIIII::ffffff[cccmmmmccc]ffffffFFF	chr17:33416031-33416305(-)$1	274	187	231	24.6666
lldddd]dddd:eeeee[ccc[=============[dddd[ddd	chr19:42788418-42788702(+)$1	284	153	197	23.4444
JJ:::ffffff[eeeee[ccc&&&&&&&iiiiiiiii[cccooo	chr3:197024613-197024855(-)$1	242	81	125	21.4444
edddd!!a[cccmmmmccc]a]dddd::BB{BB{GGGGGGGLLL	chr22:41488389-41488640(+)$1	251	58	102	18.7777
ppppccc]bb:::BBIIIIIIIIIBB}HHHHHHHH}DDDD}EEE	chr17:38334271-38334518(+)$1	247	89	133	19.1111
FFFFF{BB{BB{CCC{A{DDDDMMMMEEEEE{AKKBB{CCC{DD	chr8:8243852-8244099(-)$1	247	6	50	38.8888
ff]ccc]eeeeebbeeeee::dddd[dddd[bbffffffbb!!b	chr19:1104601-1104871(+)$1	270	102	146	21.0000
iiiii"""ccc[bb[a[a[bb!!dddd!!dddd!!ammmma22d	chr2:191513652-191513915(+)$1	263	102	146	27.2222
a::::hhhhhhhhnnnnnhhhhhhhhBB}BB}GGGGGGG~~~~D	chr2:242447635-242447907(-)$1	272	208	252	27.6666
ffffff[bbmmmmbb]ffffff:hhhhhhhh[a"""ccc[a"""	chr5:179921609-179921883(+)$1	274	29	73	20.2222
JJJJJJJJJ:ccc[bb[bb[bb"""bb[ddddrrrrrrrrrddd	chr5:92920301-92920549(+)$1	248	186	230	20.3333
pdddd::eeeee!!ccc[bb"""bboooooobb22bb]ccc444	chr1:155947805-155948094(-)$1	289	48	92	17.1111
dddd!!ccc[ggggggg"""cccmmmmccc333ggggggg]ccc	chrX:20284769-20284985(-)$1	216	125	169	20.5555
a!!eeeeellleeeee22a]ggggggg]a]ffffff::::::::	chr11:65339918-65340202(+)$1	284	141	185	21.4444
hhhhhhhhEEEEE{FFFFFFKKFFFFFF::::::ffffff"""d	chr1:2160039-2160323(+)$1	284	86	130	31.7777
E{A{EEEEE{EEEEE{A{EEEEE:::bb[cccmmmmccc]bbbb	chr2:95825186-95825454(-)$1	268	39	83	20.4444
dddEEEEE}CCCZZZBB}DDDDYYDDDD}BBEEEEE}CCCZZZF	chr2:159314472-159314726(+)$1	254	115	159	18.8888
ccc[eeeee[ddddccc!!ccc"""ffffff!!bb"""ddddll	chr13:113863704-113864033(+)$1	329	148	192	17.4444
ddd22dddd]ddddgggggggeeeee!!cccnnnnnccc4444e	chr19:50815984-50816227(-)$1	243	73	117	17.2222
cc22gggggggdddd4444ggggggg]dddd22ggggggg333e	chr12:131356942-131357208(+)$1	266	71	115	18.6666
dddd!!ccc[ggggggg"""cccmmmmccc333ggggggg]ccc	chrX:20284785-20285011(-)$1	226	151	195	20.5555
b[ccc[accclllccc]a]ccc]bb]bb]bb]ccc:ffffff[b	chr19:42788308-42788565(+)$1	257	194	238	22.2222
[ccc####a"""cccnnnnnccc22a4444ccc]dddd4444cc	chr19:3062229-3062530(-)$1	301	166	210	30.2222
666eeeee22a]bb]dddd]ggggggghhhhhhhh]ddddFFFF	chr20:57267624-57267893(+)$1	269	222	266	22.7777
g"""ccc[ccc[ccc[ddddllldddd22ccc]cccccc22ggg	chr16:87426130-87426483(+)$1	353	122	166	24.6666
ddccc]dddddddd:::::::::::DDDD}BB~~~~HHHHHHHH	chr2:202001718-202002047(+)$1	329	195	239	18.5555
dddd:bb[bb[iiiiiiiii!!bb"""iiiiiiiii!!eeeee!	chr1:90308912-90309166(+)$1	254	111	155	17.4444
cc22gggggggdddd4444ggggggg]dddd22ggggggg]eee	chr12:131356824-131357101(+)$1	277	189	233	18.6666
bCCC{FFFFFF{BB:::::::ddddllldddd:::bbbb[bb[d	chr8:12990823-12991137(-)$1	314	95	139	23.2222
{BB{FFFFFF:::eeeee[a[bb[ccc[a"""bboooooobb55	chr17:36955687-36955938(-)$1	251	95	139	22.2222
ee!!ggggggg[a[a[ccc[a[dddd[dddd[bb[bbppppppp	chr5:92920398-92920634(+)$1	236	112	156	18.8888
eee[a$$$$$eeeee[affffffdddd[bb[dddd[ggggggg!	chr8:144679174-144679420(-)$1	246	84	128	23.1111
[eeeeecccffffff[ffffff!!bb[dddd"""dddd[ccc[b	chr3:52567609-52567899(-)$1	290	120	164	32.2222

#DB
(.....))))......))))).((.(.(((((....))))).).	chr12:131356618-131356923(+)$1	1	164	208	23.6666
.)).))))...).)))..)))))))))))))))).(.(((.(.(	chr18:8609556-8609822(+)$1	1	73	117	26.3333
.(((..((.((....)).)).....))).))))))))))...((	chr5:74162100-74162384(-)$1	1	103	147	21.1111
...)))......)))))))))..).))......((((.....))	chr20:57467330-57467613(+)$1	1	90	134	19.3333
(((((((....((((((...(((((.((..(..((((((((.((	chr17:38334121-38334368(+)$1	1	99	143	20.3333
.((((.(.(((....(((((((...(((((((((((((((((((	chr2:54087066-54087331(-)$1	1	111	155	22.6666
((.((((((.(....).)).)))).)).).((((((((.(((..	chr2:42275202-42275460(+)$1	1	3	47	30.7777
((.(((((...(((.(((.((((.((((.(((.((((((((...	chr3:33481595-33481861(-)$1	1	11	55	24.3333
))(((.......)))))).)))))).)))))).)))))))))))	chr20:57267709-57267987(+)$1	1	179	223	43.8888
((((.(.((..(.(((((((((((.(((.(((.((((......)	chr20:57267787-57268055(+)$1	1	101	145	43.8888
)....((((((((.....)))))))))).))...))))).))..	chr2:242447564-242447835(-)$1	1	136	180	27.6666
((((((((((.((((((((((((((.((..(.(.((((..((((	chr12:132414113-132414376(+)$1	1	73	117	20.4444
)))))))))))))))..((((((.(((....))).)))))))))	chr17:33416031-33416305(-)$1	1	187	231	24.6666
..)))).)))).(((((.(((.(((((((((((((.((((.(((	chr19:42788418-42788702(+)$1	1	153	197	23.4444
((...((((((.(((((.(((.......(((((((((.(((...	chr3:197024613-197024855(-)$1	1	81	125	21.4444
)((((..(.(((....))).).))))..((.((.(((((((...	chr22:41488389-41488640(+)$1	1	58	102	18.7777
....))).))...))))))))))))).)))))))).)))).)))	chr17:38334271-38334518(+)$1	1	89	133	19.1111
(((((.((.((.(((.(.((((....(((((.(..((.(((.((	chr8:8243852-8244099(-)$1	1	6	50	38.8888
)).))).))))))))))))..((((.((((.((((((((((..(	chr19:1104601-1104871(+)$1	1	102	146	21.0000
(((((...(((.((.(.(.((..((((..((((..(....)..)	chr2:191513652-191513915(+)$1	1	102	146	27.2222
)....((((((((.....)))))))))).)).)))))))....)	chr2:242447635-242447907(-)$1	1	208	252	27.6666
((((((.((....)).)))))).((((((((.(...(((.(...	chr5:179921609-179921883(+)$1	1	29	73	20.2222
))))))))).(((.((.((.((...((.((((.........)))	chr5:92920301-92920549(+)$1	1	186	230	20.3333
.))))..(((((..(((.((...((......))..)).)))...	chr1:155947805-155948094(-)$1	1	48	92	17.1111
((((..(((.(((((((...(((....)))...))))))).)))	chrX:20284769-20284985(-)$1	1	125	169	20.5555
(..(((((...)))))..).))))))).).))))))........	chr11:65339918-65340202(+)$1	1	141	185	21.4444
))))))))(((((.((((((..((((((......((((((...(	chr1:2160039-2160323(+)$1	1	86	130	31.7777
(.(.(((((.(((((.(.(((((...((.(((....))).))((	chr2:95825186-95825454(-)$1	1	39	83	20.4444
)))))))).)))...)).))))..)))).))))))).)))...)	chr2:159314472-159314726(+)$1	1	115	159	18.8888
(((.(((((.(((((((..(((...((((((..((...((((..	chr13:113863704-113864033(+)$1	1	148	192	17.4444
)))..)))).))))((((((((((((..(((.....)))....)	chr19:50815984-50816227(-)$1	1	73	117	17.2222
))..)))))))))))....))))))).))))..)))))))...)	chr12:131356942-131357208(+)$1	1	71	115	18.6666
((((..(((.(((((((...(((....)))...))))))).)))	chrX:20284785-20285011(-)$1	1	151	195	20.5555
(.(((.((((...))).).))).)).)).)).))).((((((.(	chr19:42788308-42788565(+)$1	1	194	238	22.2222
.(((....(...(((.....)))..)....))).))))....))	chr19:3062229-3062530(-)$1	1	166	210	30.2222
...)))))..).)).)))).))))))))))))))).))))))))	chr20:57267624-57267893(+)$1	1	222	266	22.7777
(...(((.(((.(((.((((...))))..))).))))))..)))	chr16:87426130-87426483(+)$1	1	122	166	24.6666
))))).))))))))...........)))).))....))))))))	chr2:202001718-202002047(+)$1	1	195	239	18.5555
)))).((.((.(((((((((..((...(((((((((..(((((.	chr1:90308912-90309166(+)$1	1	111	155	17.4444
))..)))))))))))....))))))).))))..))))))).)))	chr12:131356824-131357101(+)$1	1	189	233	18.6666
)(((.((((((.((.......((((...))))...((((.((.(	chr8:12990823-12991137(-)$1	1	95	139	23.2222
.((.((((((...(((((.(.((.(((.(...((......))..	chr17:36955687-36955938(-)$1	1	95	139	22.2222
((..(((((((.(.(.(((.(.((((.((((.((.((.......	chr5:92920398-92920634(+)$1	1	112	156	18.8888
(((.(.....(((((.(((((((((((.((.((((.(((((((.	chr8:144679174-144679420(-)$1	1	84	128	23.1111
.((((((((((((((.((((((..((.((((...((((.(((.(	chr3:52567609-52567899(-)$1	1	120	164	32.2222

#PSSM
g : 0.31	G : 0.22	c : 0.20	C : 0.20	A : 0.04	u : 0.02	
g : 0.39	G : 0.35	c : 0.13	C : 0.06	A : 0.02	U : 0.02	
g : 0.48	G : 0.35	C : 0.04	c : 0.04	u : 0.02	A : 0.02	a : 0.02	
g : 0.33	G : 0.24	c : 0.20	C : 0.11	A : 0.04	U : 0.02	u : 0.02	a : 0.02	
c : 0.35	C : 0.20	g : 0.20	G : 0.08	A : 0.08	U : 0.04	u : 0.02	
g : 0.51	G : 0.37	c : 0.06	C : 0.02	A : 0.02	
g : 0.28	G : 0.22	a : 0.17	C : 0.13	c : 0.11	A : 0.04	U : 0.02	
c : 0.28	C : 0.24	g : 0.17	G : 0.11	a : 0.11	A : 0.04	U : 0.02	
g : 0.46	G : 0.28	c : 0.08	U : 0.06	A : 0.04	u : 0.02	C : 0.02	
g : 0.44	G : 0.37	a : 0.06	c : 0.06	A : 0.02	C : 0.02	
g : 0.28	c : 0.22	G : 0.15	A : 0.15	a : 0.06	C : 0.06	U : 0.04	
g : 0.42	G : 0.28	c : 0.08	a : 0.06	C : 0.06	A : 0.04	u : 0.02	
g : 0.33	G : 0.20	c : 0.20	C : 0.13	u : 0.04	A : 0.04	U : 0.02	a : 0.02	
c : 0.33	g : 0.20	G : 0.17	C : 0.15	a : 0.06	U : 0.04	A : 0.02	
g : 0.24	c : 0.20	G : 0.15	a : 0.13	C : 0.13	U : 0.11	u : 0.02	
g : 0.39	G : 0.15	C : 0.13	c : 0.11	U : 0.08	u : 0.06	a : 0.02	A : 0.02	
c : 0.22	g : 0.17	a : 0.15	C : 0.13	A : 0.11	G : 0.08	U : 0.08	u : 0.02	
g : 0.57	G : 0.28	U : 0.06	c : 0.04	A : 0.02	
g : 0.31	c : 0.26	C : 0.15	G : 0.11	U : 0.06	A : 0.04	a : 0.04	
G : 0.28	g : 0.26	c : 0.20	U : 0.08	u : 0.06	a : 0.06	C : 0.02	
g : 0.44	G : 0.26	U : 0.11	c : 0.11	u : 0.02	A : 0.02	a : 0.02	
c : 0.28	G : 0.22	g : 0.20	C : 0.15	a : 0.08	U : 0.02	u : 0.02	
g : 0.46	G : 0.28	c : 0.08	A : 0.06	C : 0.04	a : 0.02	u : 0.02	
g : 0.51	G : 0.33	c : 0.06	C : 0.04	u : 0.02	A : 0.02	
g : 0.42	G : 0.26	c : 0.11	C : 0.08	U : 0.06	A : 0.02	u : 0.02	
c : 0.39	C : 0.26	g : 0.13	G : 0.08	A : 0.08	a : 0.02	
G : 0.31	g : 0.28	c : 0.15	U : 0.08	u : 0.06	C : 0.04	a : 0.04	
g : 0.37	G : 0.28	U : 0.08	C : 0.06	u : 0.06	a : 0.06	c : 0.04	
g : 0.51	G : 0.39	U : 0.04	c : 0.04	
g : 0.42	G : 0.26	C : 0.13	c : 0.08	u : 0.04	U : 0.02	A : 0.02	
c : 0.39	C : 0.17	G : 0.11	g : 0.11	A : 0.11	a : 0.04	U : 0.04	
g : 0.26	c : 0.22	C : 0.20	G : 0.11	A : 0.08	U : 0.04	u : 0.04	a : 0.02	
g : 0.48	G : 0.37	a : 0.06	c : 0.04	A : 0.02	
g : 0.51	G : 0.20	C : 0.08	U : 0.06	A : 0.06	c : 0.04	u : 0.02	
g : 0.46	G : 0.31	c : 0.06	C : 0.06	U : 0.02	A : 0.02	a : 0.02	u : 0.02	
c : 0.37	G : 0.20	g : 0.15	C : 0.15	A : 0.06	a : 0.04	
g : 0.28	c : 0.24	G : 0.20	C : 0.13	A : 0.04	U : 0.04	a : 0.02	u : 0.02	
g : 0.39	G : 0.28	c : 0.15	C : 0.06	U : 0.04	a : 0.02	A : 0.02	
g : 0.37	G : 0.20	C : 0.13	c : 0.13	U : 0.06	u : 0.04	A : 0.02	a : 0.02	
g : 0.44	G : 0.37	c : 0.08	a : 0.04	U : 0.02	A : 0.02	
g : 0.28	G : 0.20	C : 0.17	c : 0.15	a : 0.06	U : 0.04	u : 0.04	A : 0.02	
c : 0.33	g : 0.13	U : 0.13	A : 0.11	C : 0.11	a : 0.08	G : 0.08	
g : 0.39	G : 0.35	a : 0.06	A : 0.04	U : 0.04	u : 0.04	c : 0.02	C : 0.02	
g : 0.48	G : 0.37	C : 0.06	u : 0.02	c : 0.02	A : 0.02	

#score	1065.5555555555566
#seq	45
#width	44
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_transcript_m3_run1.nuc.txt

#NT
AACGCUGCUGUCUCGCAGUCACCCCUGCAGGCCGCUCAGGGCAGGGCUCUGGCCUGACGGGGGUUCCUGGACACGCCUCUGAGCCGGCAGCCCCUACCCGCACCCGUGCACCUUCCACGCCCGUCUCCAGCAgccccugcccccacccgcaccccugcaccugccacgccugucuccggcagccccugcccgcacccgcaccccugcaccugccacgcccgucuccggcagcaccugccacgcccgucuccggcagcaccugccacgcccgucuccggcagcaccugccacgcccgucuccggcagccc	chr8:144343829-144344140(+)$1	311	1	310	389.5000

#otherMatches

#Struct PSSM
JJJJJJJ::::::::::::ccc####bbiiiiiiiii[bboooooobb]iiiiiiiii]bb55555ccc:::::dddd$$$$$ffffff[aeeeee!!eeeeennnnneeeee55555eeeee4444a]ffffff4444dddd::::::JJJJJJJJJJ:ccc"""==========nnnnn==========22ccc:::::::::::::gggggggffffff"""ccc!!dddd####bb!!fffffftttttttttttffffff22bb22dddd]ccc22ffffff>>>>>>>>>>>>>>>ggggggg	chr9:35092145-35092458(-)$1	313	3	312	389.5000
:::GGGGGGG::::ddddoooooodddddddd####ddddffffff"""ccc$$$$$hhhhhhhh[eeeee[ccc$$$$$bbbbccc!!bbqqqqqqqqbb22ccc]bb4444bb666666ccc]eeeee]hhhhhhhh7777777ccc333ffffff]dddd4444dddd::::::eeeeellleeeee:ccc"""cccmmmmccc333ccc:ccc!!ccc####eeeee"""eeeeeccc!!ccc####eeeeellleeeeeccc22ccc4444eeeee333eeeeeccc22ccc:::GGGGGGG::	chr8:144343829-144344140(+)$1	311	1	310	389.5000

#DB
(((((((............(((....(((((((((((.((......)).))))))))).)).....))).....((((.....((((((.((((((..(((((.....))))).....)))))....).))))))....))))......)))))))))).(((...((((((((((.....))))))))))..))).............(((((((((((((...(((..((((....((..((((((...........))))))..))..)))).)))..))))))...............)))))))	chr9:35092145-35092458(-)$1	1	3	312	389.5000
...(((((((....((((......))))((((....((((((((((...(((.....((((((((.(((((.(((.....(((((((..((........))..))).))....))......))).))))).)))))))).......)))...)))))).))))....))))......(((((...))))).(((...(((....)))...))).(((..(((....(((((...((((((((..(((....(((((...))))))))..)))....)))))...))))))))..)))...)))))))..	chr8:144343829-144344140(+)$1	1	1	310	389.5000

#PSSM
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	c : 0.50	
U : 0.50	c : 0.50	
U : 0.50	c : 0.50	
C : 0.50	u : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
U : 0.50	a : 0.50	
U : 0.50	c : 0.50	
U : 0.50	c : 0.50	
C : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	a : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
A : 0.50	c : 0.50	
A : 0.50	c : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	a : 0.50	
U : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	c : 0.50	
U : 0.50	u : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
A : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
U : 0.50	a : 0.50	
U : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	u : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
U : 0.50	c : 0.50	
U : 0.50	u : 0.50	
A : 0.50	c : 0.50	
C : 0.50	c : 0.50	
U : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	a : 0.50	
G : 0.50	c : 0.50	
U : 0.50	c : 0.50	
U : 0.50	u : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	c : 0.50	
C : 0.50	a : 0.50	
U : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
U : 0.50	c : 0.50	
G : 0.50	u : 0.50	
U : 0.50	c : 0.50	
U : 0.50	c : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
U : 0.50	c : 0.50	
C : 0.50	a : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	a : 0.50	
G : 0.50	c : 0.50	
A : 0.50	c : 0.50	
U : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	c : 0.50	
U : 0.50	a : 0.50	
U : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
A : 0.50	c : 0.50	
G : 0.50	u : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
U : 0.50	g : 0.50	
C : 0.50	u : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
U : 0.50	c : 0.50	
U : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	c : 0.50	

#score	779.0
#seq	2
#width	309
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_CDS_m3_run2.nuc.txt

#NT
AUC	chr15:63862531-63862824(+)$1	293	105	108	9.0000
AUC	chr19:40748468-40748695(-)$1	227	120	123	9.0000
AUC	chr17:49244119-49244347(+)$1	228	96	99	9.0000
AUC	chr12:22208297-22208528(+)$1	231	62	65	9.0000
AUC	chr1:154306625-154306841(+)$1	216	106	109	9.0000
AUC	chrX:129203355-129203626(-)$1	271	169	172	9.0000
AUC	chr1:149858993-149859199(-)$1	206	66	69	9.0000
AUC	chr9:139906243-139906544(-)$1	301	96	99	9.0000
AUC	chrX:153579286-153579493(-)$1	207	57	60	9.0000
AUC	chr19:1401297-1401567(-)$1	270	61	64	9.0000
AUC	chr17:76182928-76183152(-)$1	224	137	140	9.0000
AUC	chr16:69728997-69729225(+)$1	228	83	86	9.0000
AUC	chr16:1365569-1365793(+)$1	224	16	19	9.0000
AUC	chr11:65623540-65623756(-)$1	216	7	10	9.0000
AUC	chr19:18685618-18685828(+)$1	210	153	156	9.0000
AUC	chr16:28847153-28847357(+)$1	204	118	121	9.0000
AUC	chr16:2013087-2013306(-)$1	219	51	54	9.0000
AUC	chr8:66525532-66525768(-)$1	236	54	57	9.0000
AUC	chr20:1426210-1426430(-)$1	220	28	31	9.0000
AUC	chr12:14577547-14577843(+)$1	296	14	17	9.0000
AUC	chr6:57037409-57037659(+)$1	250	101	104	9.0000
AUC	chr19:5214282-5214531(-)$1	249	40	43	9.0000
AUC	chr1:44442164-44442394(+)$1	230	80	83	9.0000
AUC	chr8:99057073-99057277(-)$1	204	51	54	9.0000
AUC	chr6:170114790-170115011(-)$1	221	151	154	9.0000
AUC	chr20:36789877-36790082(-)$1	205	23	26	9.0000
AUC	chr3:183896657-183896885(+)$1	228	21	24	9.0000
AUC	chr6:47566966-47567235(+)$1	269	5	8	9.0000
AUC	chr9:134738349-134738596(-)$1	247	103	106	9.0000
AUC	chr5:176729484-176729730(-)$1	246	242	245	9.0000
AUC	chr22:26936830-26937113(-)$1	283	93	96	9.0000
AUC	chrX:134947867-134948116(-)$1	249	191	194	9.0000
AUC	chrX:153053244-153053450(-)$1	206	68	71	9.0000
AUC	chr19:3057619-3057826(-)$1	207	63	66	9.0000
AUC	chr2:219610312-219610544(+)$1	232	26	29	9.0000
AUC	chr2:86683827-86684044(+)$1	217	76	79	9.0000
AUC	chr6:30691961-30692165(+)$1	204	18	21	9.0000
AUC	chr5:32403290-32403579(-)$1	289	32	35	9.0000
AUC	chr2:96858880-96859124(-)$1	244	73	76	9.0000
AUC	chr19:8038564-8038817(-)$1	253	28	31	9.0000
AUC	chr21:36164662-36164978(-)$1	316	127	130	9.0000
AUC	chr19:6362359-6362572(+)$1	213	27	30	9.0000
AUC	chr10:74034803-74035023(+)$1	220	92	95	9.0000
AUC	chr17:30321481-30321753(+)$1	272	102	105	9.0000
AUC	chr17:80014061-80014264(+)$1	203	143	146	9.0000
AUC	chr15:65822880-65823122(+)$1	242	96	99	9.0000
AUC	chr16:2825397-2825604(-)$1	207	28	31	9.0000
AUC	chr19:17678218-17678449(+)$1	231	17	20	9.0000
AUC	chr15:41667884-41668119(+)$1	235	94	97	9.0000
AUC	chr1:27092891-27093097(+)$1	206	9	12	9.0000
AUC	chr7:130295815-130296040(-)$1	225	16	19	9.0000
AUC	chr16:75661785-75661991(-)$1	206	89	92	9.0000
AUC	chr4:57839320-57839612(-)$1	292	211	214	9.0000
AUC	chr12:49717900-49718136(+)$1	236	77	80	9.0000
AUC	chr16:2813467-2813671(+)$1	204	94	97	9.0000
AUC	chr6:27101028-27101237(+)$1	209	8	11	9.0000
AUC	chr10:76855245-76855577(-)$1	332	52	55	9.0000
AUC	chr3:100100382-100100642(-)$1	260	2	5	9.0000
AUC	chr9:103055206-103055420(+)$1	214	99	102	9.0000
AUC	chr22:31333520-31333796(-)$1	276	79	82	9.0000
AUC	chr7:99621277-99621510(+)$1	233	96	99	9.0000
AUC	chr4:84382173-84382477(+)$1	304	88	91	9.0000
AUC	chr2:220115389-220115607(-)$1	218	12	15	9.0000
AUC	chr19:11136025-11136265(+)$1	240	5	8	9.0000
AUC	chr20:57480369-57480610(+)$1	241	188	191	9.0000
AUC	chr17:39845969-39846185(+)$1	216	15	18	9.0000
AUC	chr11:59836946-59837153(+)$1	207	86	89	9.0000
AUC	chr19:16339481-16339770(+)$1	289	4	7	9.0000
AUC	chr17:4849840-4850049(-)$1	209	21	24	9.0000
AUC	chr3:50387919-50388161(-)$1	242	96	99	9.0000
AUC	chr21:30439879-30440094(-)$1	215	75	78	9.0000
AUC	chr1:24021096-24021300(+)$1	204	113	116	9.0000
AUC	chr14:68117968-68118273(-)$1	305	33	36	9.0000
AUC	chr9:140652242-140652493(+)$1	251	108	111	9.0000
AUC	chr11:811507-811713(+)$1	206	47	50	9.0000
AUC	chr14:101200881-101201091(+)$1	210	49	52	9.0000
AUC	chr11:47648532-47648736(-)$1	204	119	122	9.0000
AUC	chr1:36921699-36921909(-)$1	210	191	194	9.0000
AUC	chr4:77976370-77976598(-)$1	228	127	130	9.0000
AUC	chr10:120936435-120936646(-)$1	211	165	168	9.0000
AUC	chr6:35840293-35840546(-)$1	253	80	83	9.0000
AUC	chr5:68660869-68661158(-)$1	289	1	4	9.0000
AUC	chr4:83978427-83978662(+)$1	235	118	121	9.0000
AUC	chr1:45241696-45241905(+)$1	209	11	14	9.0000
AUC	chr13:26975611-26975861(+)$1	250	49	52	9.0000
AUC	chrX:47517158-47517362(-)$1	204	95	98	9.0000
AUC	chr6:35837316-35837549(-)$1	233	15	18	9.0000
AUC	chr1:242023748-242024014(+)$1	266	127	130	9.0000
AUC	chr14:77934325-77934553(+)$1	228	57	60	9.0000
AUC	chr8:99054817-99055028(-)$1	211	28	31	9.0000
AUC	chr10:35305106-35305394(-)$1	288	227	230	9.0000

#otherMatches

#Struct PSSM
xxx	chr2:242438000-242438265(-)$1	265	102	105	9.0000
:::	chr15:63862531-63862824(+)$1	293	105	108	9.0000
ddm	chr19:40748468-40748695(-)$1	227	120	123	9.0000
[ee	chr17:49244119-49244347(+)$1	228	96	99	9.0000
2dd	chr12:22208297-22208528(+)$1	231	62	65	9.0000
D{D	chr1:154306625-154306841(+)$1	216	106	109	9.0000
HHH	chrX:129203355-129203626(-)$1	271	169	172	9.0000
:::	chr1:149858993-149859199(-)$1	206	66	69	9.0000
cc[	chr9:139906243-139906544(-)$1	301	96	99	9.0000
%%a	chrX:153579286-153579493(-)$1	207	57	60	9.0000
fff	chr19:1401297-1401567(-)$1	270	61	64	9.0000
22f	chr17:76182928-76183152(-)$1	224	137	140	9.0000
###	chr16:69728997-69729225(+)$1	228	83	86	9.0000
F{B	chr16:1365569-1365793(+)$1	224	16	19	9.0000
dnn	chr11:65623540-65623756(-)$1	216	7	10	9.0000
qqq	chr19:18685618-18685828(+)$1	210	153	156	9.0000
e22	chr16:28847153-28847357(+)$1	204	118	121	9.0000
f33	chr16:2013087-2013306(-)$1	219	51	54	9.0000
:::	chr8:66525532-66525768(-)$1	236	54	57	9.0000
:::	chr20:1426210-1426430(-)$1	220	28	31	9.0000
CCC	chr12:14577547-14577843(+)$1	296	14	17	9.0000
qqq	chr6:57037409-57037659(+)$1	250	101	104	9.0000
eee	chr19:5214282-5214531(-)$1	249	40	43	9.0000
GGG	chr1:44442164-44442394(+)$1	230	80	83	9.0000
oee	chr8:99057073-99057277(-)$1	204	51	54	9.0000
:::	chr6:170114790-170115011(-)$1	221	151	154	9.0000
[bb	chr20:36789877-36790082(-)$1	205	23	26	9.0000
nnn	chr3:183896657-183896885(+)$1	228	21	24	9.0000
FFC	chr6:47566966-47567235(+)$1	269	5	8	9.0000
&&&	chr9:134738349-134738596(-)$1	247	103	106	9.0000
:::	chr5:176729484-176729730(-)$1	246	242	245	9.0000
SSS	chr22:26936830-26937113(-)$1	283	93	96	9.0000
CCC	chrX:134947867-134948116(-)$1	249	191	194	9.0000
www	chrX:153053244-153053450(-)$1	206	68	71	9.0000
e::	chr19:3057619-3057826(-)$1	207	63	66	9.0000
]ii	chr2:219610312-219610544(+)$1	232	26	29	9.0000
eee	chr2:86683827-86684044(+)$1	217	76	79	9.0000
{DD	chr6:30691961-30692165(+)$1	204	18	21	9.0000
WWW	chr5:32403290-32403579(-)$1	289	32	35	9.0000
LLL	chr2:96858880-96859124(-)$1	244	73	76	9.0000
:::	chr19:8038564-8038817(-)$1	253	28	31	9.0000
^^^	chr21:36164662-36164978(-)$1	316	127	130	9.0000
:gg	chr19:6362359-6362572(+)$1	213	27	30	9.0000
$$$	chr10:74034803-74035023(+)$1	220	92	95	9.0000
fff	chr17:30321481-30321753(+)$1	272	102	105	9.0000
33b	chr17:80014061-80014264(+)$1	203	143	146	9.0000
2a]	chr15:65822880-65823122(+)$1	242	96	99	9.0000
fee	chr16:2825397-2825604(-)$1	207	28	31	9.0000
MMM	chr19:17678218-17678449(+)$1	231	17	20	9.0000
ppp	chr15:41667884-41668119(+)$1	235	94	97	9.0000
:::	chr1:27092891-27093097(+)$1	206	9	12	9.0000
JJJ	chr7:130295815-130296040(-)$1	225	16	19	9.0000
fff	chr16:75661785-75661991(-)$1	206	89	92	9.0000
:CC	chr4:57839320-57839612(-)$1	292	211	214	9.0000
:EE	chr12:49717900-49718136(+)$1	236	77	80	9.0000
!!b	chr16:2813467-2813671(+)$1	204	94	97	9.0000
MMM	chr6:27101028-27101237(+)$1	209	8	11	9.0000
[bb	chr10:76855245-76855577(-)$1	332	52	55	9.0000
DD:	chr3:100100382-100100642(-)$1	260	2	5	9.0000
eee	chr9:103055206-103055420(+)$1	214	99	102	9.0000
::I	chr22:31333520-31333796(-)$1	276	79	82	9.0000
]ee	chr7:99621277-99621510(+)$1	233	96	99	9.0000
EEE	chr4:84382173-84382477(+)$1	304	88	91	9.0000
III	chr2:220115389-220115607(-)$1	218	12	15	9.0000
:::	chr19:11136025-11136265(+)$1	240	5	8	9.0000
:::	chr20:57480369-57480610(+)$1	241	188	191	9.0000
fff	chr17:39845969-39846185(+)$1	216	15	18	9.0000
iii	chr11:59836946-59837153(+)$1	207	86	89	9.0000
[cc	chr19:16339481-16339770(+)$1	289	4	7	9.0000
EBB	chr17:4849840-4850049(-)$1	209	21	24	9.0000
ddl	chr3:50387919-50388161(-)$1	242	96	99	9.0000
EEE	chr21:30439879-30440094(-)$1	215	75	78	9.0000
gff	chr1:24021096-24021300(+)$1	204	113	116	9.0000
mmb	chr14:68117968-68118273(-)$1	305	33	36	9.0000
[ee	chr9:140652242-140652493(+)$1	251	108	111	9.0000
mmm	chr11:811507-811713(+)$1	206	47	50	9.0000
eee	chr14:101200881-101201091(+)$1	210	49	52	9.0000
g&&	chr11:47648532-47648736(-)$1	204	119	122	9.0000
~~~	chr1:36921699-36921909(-)$1	210	191	194	9.0000
nnd	chr4:77976370-77976598(-)$1	228	127	130	9.0000
::c	chr10:120936435-120936646(-)$1	211	165	168	9.0000
c]d	chr6:35840293-35840546(-)$1	253	80	83	9.0000
EEE	chr5:68660869-68661158(-)$1	289	1	4	9.0000
cco	chr4:83978427-83978662(+)$1	235	118	121	9.0000
:::	chr1:45241696-45241905(+)$1	209	11	14	9.0000
$$$	chr13:26975611-26975861(+)$1	250	49	52	9.0000
gg[	chrX:47517158-47517362(-)$1	204	95	98	9.0000
HHH	chr6:35837316-35837549(-)$1	233	15	18	9.0000
MCC	chr1:242023748-242024014(+)$1	266	127	130	9.0000
fff	chr14:77934325-77934553(+)$1	228	57	60	9.0000
:::	chr8:99054817-99055028(-)$1	211	28	31	9.0000
}FF	chr10:35305106-35305394(-)$1	288	227	230	9.0000

#DB
...	chr2:242438000-242438265(-)$1	1	102	105	9.0000
...	chr15:63862531-63862824(+)$1	1	105	108	9.0000
((.	chr19:40748468-40748695(-)$1	1	120	123	9.0000
.((	chr17:49244119-49244347(+)$1	1	96	99	9.0000
.))	chr12:22208297-22208528(+)$1	1	62	65	9.0000
(.(	chr1:154306625-154306841(+)$1	1	106	109	9.0000
)))	chrX:129203355-129203626(-)$1	1	169	172	9.0000
...	chr1:149858993-149859199(-)$1	1	66	69	9.0000
((.	chr9:139906243-139906544(-)$1	1	96	99	9.0000
..(	chrX:153579286-153579493(-)$1	1	57	60	9.0000
(((	chr19:1401297-1401567(-)$1	1	61	64	9.0000
..)	chr17:76182928-76183152(-)$1	1	137	140	9.0000
...	chr16:69728997-69729225(+)$1	1	83	86	9.0000
(.(	chr16:1365569-1365793(+)$1	1	16	19	9.0000
(..	chr11:65623540-65623756(-)$1	1	7	10	9.0000
...	chr19:18685618-18685828(+)$1	1	153	156	9.0000
)..	chr16:28847153-28847357(+)$1	1	118	121	9.0000
)..	chr16:2013087-2013306(-)$1	1	51	54	9.0000
...	chr8:66525532-66525768(-)$1	1	54	57	9.0000
...	chr20:1426210-1426430(-)$1	1	28	31	9.0000
(((	chr12:14577547-14577843(+)$1	1	14	17	9.0000
...	chr6:57037409-57037659(+)$1	1	101	104	9.0000
(((	chr19:5214282-5214531(-)$1	1	40	43	9.0000
(((	chr1:44442164-44442394(+)$1	1	80	83	9.0000
.))	chr8:99057073-99057277(-)$1	1	51	54	9.0000
...	chr6:170114790-170115011(-)$1	1	151	154	9.0000
.((	chr20:36789877-36790082(-)$1	1	23	26	9.0000
...	chr3:183896657-183896885(+)$1	1	21	24	9.0000
(((	chr6:47566966-47567235(+)$1	1	5	8	9.0000
...	chr9:134738349-134738596(-)$1	1	103	106	9.0000
...	chr5:176729484-176729730(-)$1	1	242	245	9.0000
...	chr22:26936830-26937113(-)$1	1	93	96	9.0000
)))	chrX:134947867-134948116(-)$1	1	191	194	9.0000
...	chrX:153053244-153053450(-)$1	1	68	71	9.0000
)..	chr19:3057619-3057826(-)$1	1	63	66	9.0000
.))	chr2:219610312-219610544(+)$1	1	26	29	9.0000
(((	chr2:86683827-86684044(+)$1	1	76	79	9.0000
.((	chr6:30691961-30692165(+)$1	1	18	21	9.0000
...	chr5:32403290-32403579(-)$1	1	32	35	9.0000
...	chr2:96858880-96859124(-)$1	1	73	76	9.0000
...	chr19:8038564-8038817(-)$1	1	28	31	9.0000
...	chr21:36164662-36164978(-)$1	1	127	130	9.0000
.((	chr19:6362359-6362572(+)$1	1	27	30	9.0000
...	chr10:74034803-74035023(+)$1	1	92	95	9.0000
)))	chr17:30321481-30321753(+)$1	1	102	105	9.0000
..)	chr17:80014061-80014264(+)$1	1	143	146	9.0000
.).	chr15:65822880-65823122(+)$1	1	96	99	9.0000
(((	chr16:2825397-2825604(-)$1	1	28	31	9.0000
...	chr19:17678218-17678449(+)$1	1	17	20	9.0000
...	chr15:41667884-41668119(+)$1	1	94	97	9.0000
...	chr1:27092891-27093097(+)$1	1	9	12	9.0000
(((	chr7:130295815-130296040(-)$1	1	16	19	9.0000
)))	chr16:75661785-75661991(-)$1	1	89	92	9.0000
.))	chr4:57839320-57839612(-)$1	1	211	214	9.0000
.((	chr12:49717900-49718136(+)$1	1	77	80	9.0000
..(	chr16:2813467-2813671(+)$1	1	94	97	9.0000
...	chr6:27101028-27101237(+)$1	1	8	11	9.0000
.((	chr10:76855245-76855577(-)$1	1	52	55	9.0000
((.	chr3:100100382-100100642(-)$1	1	2	5	9.0000
(((	chr9:103055206-103055420(+)$1	1	99	102	9.0000
..(	chr22:31333520-31333796(-)$1	1	79	82	9.0000
.))	chr7:99621277-99621510(+)$1	1	96	99	9.0000
(((	chr4:84382173-84382477(+)$1	1	88	91	9.0000
(((	chr2:220115389-220115607(-)$1	1	12	15	9.0000
...	chr19:11136025-11136265(+)$1	1	5	8	9.0000
...	chr20:57480369-57480610(+)$1	1	188	191	9.0000
)))	chr17:39845969-39846185(+)$1	1	15	18	9.0000
(((	chr11:59836946-59837153(+)$1	1	86	89	9.0000
.((	chr19:16339481-16339770(+)$1	1	4	7	9.0000
(((	chr17:4849840-4850049(-)$1	1	21	24	9.0000
((.	chr3:50387919-50388161(-)$1	1	96	99	9.0000
)))	chr21:30439879-30440094(-)$1	1	75	78	9.0000
)((	chr1:24021096-24021300(+)$1	1	113	116	9.0000
..)	chr14:68117968-68118273(-)$1	1	33	36	9.0000
.((	chr9:140652242-140652493(+)$1	1	108	111	9.0000
...	chr11:811507-811713(+)$1	1	47	50	9.0000
(((	chr14:101200881-101201091(+)$1	1	49	52	9.0000
(..	chr11:47648532-47648736(-)$1	1	119	122	9.0000
...	chr1:36921699-36921909(-)$1	1	191	194	9.0000
..)	chr4:77976370-77976598(-)$1	1	127	130	9.0000
..(	chr10:120936435-120936646(-)$1	1	165	168	9.0000
).)	chr6:35840293-35840546(-)$1	1	80	83	9.0000
(((	chr5:68660869-68661158(-)$1	1	1	4	9.0000
((.	chr4:83978427-83978662(+)$1	1	118	121	9.0000
...	chr1:45241696-45241905(+)$1	1	11	14	9.0000
...	chr13:26975611-26975861(+)$1	1	49	52	9.0000
((.	chrX:47517158-47517362(-)$1	1	95	98	9.0000
(((	chr6:35837316-35837549(-)$1	1	15	18	9.0000
.((	chr1:242023748-242024014(+)$1	1	127	130	9.0000
(((	chr14:77934325-77934553(+)$1	1	57	60	9.0000
...	chr8:99054817-99055028(-)$1	1	28	31	9.0000
.))	chr10:35305106-35305394(-)$1	1	227	230	9.0000

#PSSM
A : 1.00	
U : 1.00	
C : 1.00	

#score	828.0000000000007
#seq	92
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_UTR_m2_run2.nuc.txt

#NT
AUUC	chr17:57987832-57988101(+)$1	269	3	7	12.0000
AUUC	chr11:64888808-64889060(-)$1	252	216	220	12.0000
AUUC	chr16:111169-111449(-)$1	280	239	243	12.0000
AUUC	chr6:31124787-31125037(-)$1	250	76	80	12.0000
AUUC	chr11:66367835-66368154(+)$1	319	275	279	12.0000
AUUC	chr1:19570309-19570605(-)$1	296	211	215	12.0000
AUUC	chr1:44442116-44442381(+)$1	265	246	250	12.0000
AUUC	chr3:12641475-12641755(-)$1	280	197	201	12.0000
AUUC	chr19:46025920-46026209(+)$1	289	228	232	12.0000
AUUC	chr12:122999468-122999820(-)$1	352	185	189	12.0000
AUUC	chr1:44441357-44441611(+)$1	254	184	188	12.0000
AUUC	chr6:30879425-30879694(+)$1	269	60	64	12.0000
AUUC	chr7:99950459-99950699(+)$1	240	140	144	12.0000
AUUC	chr12:49496599-49496974(-)$1	375	314	318	12.0000
AUUC	chr5:70766147-70766442(+)$1	295	50	54	12.0000
AUUC	chr1:31769939-31770194(+)$1	255	244	248	12.0000
AUUC	chr11:122932304-122932555(-)$1	251	177	181	12.0000
AUUC	chr4:166261434-166261661(+)$1	227	37	41	12.0000
AUUC	chr17:57232243-57232553(-)$1	310	22	26	12.0000
AUUC	chr6:99851462-99851825(-)$1	363	292	296	12.0000
AUUC	chr10:121336414-121336714(-)$1	300	126	130	12.0000
AUUC	chr1:236705921-236706228(+)$1	307	93	97	12.0000
AUUC	chr11:3049956-3050352(-)$1	396	19	23	12.0000
AUUC	chr11:118959780-118960066(+)$1	286	37	41	12.0000
AUUC	chr12:123087203-123087489(+)$1	286	46	50	12.0000
AUUC	chr3:195789323-195789582(-)$1	259	160	164	12.0000
AUUC	chr3:195791027-195791314(-)$1	287	152	156	12.0000
AUUC	chr9:114137254-114137522(-)$1	268	209	213	12.0000
AUUC	chr5:137903109-137903365(-)$1	256	43	47	12.0000
AUUC	chr7:6088253-6088584(-)$1	331	58	62	12.0000
AUUC	chr1:78106944-78107277(-)$1	333	295	299	12.0000
AUUC	chr4:166248937-166249179(+)$1	242	193	197	12.0000
AUUC	chr17:65715873-65716211(+)$1	338	259	263	12.0000
AUUC	chr3:14519979-14520251(+)$1	272	62	66	12.0000
AUUC	chr6:31937193-31937446(+)$1	253	155	159	12.0000
AUUC	chr7:65440826-65441094(-)$1	268	82	86	12.0000
AUUC	chr7:124537033-124537338(-)$1	305	130	134	12.0000
AUUC	chr1:28832458-28832702(+)$1	244	37	41	12.0000
AUUC	chr10:7848834-7849106(+)$1	272	152	156	12.0000
AUUC	chr11:62651853-62652117(+)$1	264	56	60	12.0000
AUUC	chr7:102952448-102952711(+)$1	263	72	76	12.0000
AUUC	chr2:96568638-96568940(-)$1	302	223	227	12.0000
AUUC	chr1:52824924-52825191(-)$1	267	209	213	12.0000
AUUC	chr11:62572517-62572798(-)$1	281	167	171	12.0000
AUUC	chr17:3728100-3728356(-)$1	256	98	102	12.0000
AUUC	chr17:46919103-46919415(+)$1	312	157	161	12.0000
AUUC	chr18:29429363-29429647(-)$1	284	71	75	12.0000
AUUC	chr7:148506334-148506581(-)$1	247	65	69	12.0000
AUUC	chr11:64535637-64535886(-)$1	249	29	33	12.0000
AUUC	chr12:51392940-51393254(-)$1	314	57	61	12.0000
AUUC	chr1:25570519-25570807(-)$1	288	85	89	12.0000
AUUC	chr3:141632500-141632816(+)$1	316	137	141	12.0000
AUUC	chr12:110720437-110720713(+)$1	276	209	213	12.0000
AUUC	chr7:73663916-73664222(-)$1	306	259	263	12.0000
AUUC	chr22:21344709-21344951(+)$1	242	39	43	12.0000
AUUc	chr19:17865091-17865384(+)$1	293	15	19	12.0000
AUUC	chr15:74914762-74915024(+)$1	262	41	45	12.0000
AUUC	chr8:29923274-29923554(-)$1	280	6	10	12.0000
AUUC	chr2:38976473-38976734(-)$1	261	93	97	12.0000
AUUC	chr10:96356598-96357034(+)$1	436	159	163	12.0000
AUUC	chr12:111160120-111160403(-)$1	283	179	183	12.0000
AUUC	chr7:99950499-99950731(+)$1	232	100	104	12.0000
AUUC	chr14:21463999-21464251(+)$1	252	234	238	12.0000
AUUC	chr17:48560969-48561250(+)$1	281	165	169	12.0000
AUUC	chr6:42994941-42995215(+)$1	274	101	105	12.0000
AUUC	chr14:58724508-58724827(+)$1	319	44	48	12.0000

#otherMatches

#Struct PSSM
d[bb	chr16:21973589-21973895(+)$1	306	154	158	12.0000
::::	chr17:57987832-57988101(+)$1	269	3	7	12.0000
eeee	chr11:64888808-64889060(-)$1	252	216	220	12.0000
[a[f	chr16:111169-111449(-)$1	280	239	243	12.0000
gg[e	chr6:31124787-31125037(-)$1	250	76	80	12.0000
iiii	chr11:66367835-66368154(+)$1	319	275	279	12.0000
[ggg	chr1:19570309-19570605(-)$1	296	211	215	12.0000
||||	chr1:44442116-44442381(+)$1	265	246	250	12.0000
hhhh	chr3:12641475-12641755(-)$1	280	197	201	12.0000
::::	chr19:46025920-46026209(+)$1	289	228	232	12.0000
iiii	chr12:122999468-122999820(-)$1	352	185	189	12.0000
mmhh	chr1:44441357-44441611(+)$1	254	184	188	12.0000
====	chr6:30879425-30879694(+)$1	269	60	64	12.0000
cc44	chr7:99950459-99950699(+)$1	240	140	144	12.0000
!!cc	chr12:49496599-49496974(-)$1	375	314	318	12.0000
8888	chr5:70766147-70766442(+)$1	295	50	54	12.0000
]ccc	chr1:31769939-31770194(+)$1	255	244	248	12.0000
333b	chr11:122932304-122932555(-)$1	251	177	181	12.0000
dddd	chr4:166261434-166261661(+)$1	227	37	41	12.0000
eeee	chr17:57232243-57232553(-)$1	310	22	26	12.0000
EZZZ	chr6:99851462-99851825(-)$1	363	292	296	12.0000
dddd	chr10:121336414-121336714(-)$1	300	126	130	12.0000
ggg6	chr1:236705921-236706228(+)$1	307	93	97	12.0000
ggmm	chr11:3049956-3050352(-)$1	396	19	23	12.0000
='''	chr11:118959780-118960066(+)$1	286	37	41	12.0000
KDDD	chr12:123087203-123087489(+)$1	286	46	50	12.0000
::::	chr3:195789323-195789582(-)$1	259	160	164	12.0000
dddd	chr3:195791027-195791314(-)$1	287	152	156	12.0000
6666	chr9:114137254-114137522(-)$1	268	209	213	12.0000
DD:f	chr5:137903109-137903365(-)$1	256	43	47	12.0000
ddd]	chr7:6088253-6088584(-)$1	331	58	62	12.0000
ggmm	chr1:78106944-78107277(-)$1	333	295	299	12.0000
ffff	chr4:166248937-166249179(+)$1	242	193	197	12.0000
ffff	chr17:65715873-65716211(+)$1	338	259	263	12.0000
ffff	chr3:14519979-14520251(+)$1	272	62	66	12.0000
E:ee	chr6:31937193-31937446(+)$1	253	155	159	12.0000
mmmb	chr7:65440826-65441094(-)$1	268	82	86	12.0000
hhhh	chr7:124537033-124537338(-)$1	305	130	134	12.0000
LLLC	chr1:28832458-28832702(+)$1	244	37	41	12.0000
ddd2	chr10:7848834-7849106(+)$1	272	152	156	12.0000
EEEE	chr11:62651853-62652117(+)$1	264	56	60	12.0000
g]bb	chr7:102952448-102952711(+)$1	263	72	76	12.0000
:ddd	chr2:96568638-96568940(-)$1	302	223	227	12.0000
eeee	chr1:52824924-52825191(-)$1	267	209	213	12.0000
dd[b	chr11:62572517-62572798(-)$1	281	167	171	12.0000
GGGG	chr17:3728100-3728356(-)$1	256	98	102	12.0000
====	chr17:46919103-46919415(+)$1	312	157	161	12.0000
::::	chr18:29429363-29429647(-)$1	284	71	75	12.0000
''''	chr7:148506334-148506581(-)$1	247	65	69	12.0000
oobb	chr11:64535637-64535886(-)$1	249	29	33	12.0000
D:::	chr12:51392940-51393254(-)$1	314	57	61	12.0000
ssss	chr1:25570519-25570807(-)$1	288	85	89	12.0000
%%%%	chr3:141632500-141632816(+)$1	316	137	141	12.0000
g:::	chr12:110720437-110720713(+)$1	276	209	213	12.0000
[bbb	chr7:73663916-73664222(-)$1	306	259	263	12.0000
ddd]	chr22:21344709-21344951(+)$1	242	39	43	12.0000
cvvv	chr19:17865091-17865384(+)$1	293	15	19	12.0000
C{EE	chr15:74914762-74915024(+)$1	262	41	45	12.0000
d!!c	chr8:29923274-29923554(-)$1	280	6	10	12.0000
ssss	chr2:38976473-38976734(-)$1	261	93	97	12.0000
::::	chr10:96356598-96357034(+)$1	436	159	163	12.0000
CC}E	chr12:111160120-111160403(-)$1	283	179	183	12.0000
6iii	chr7:99950499-99950731(+)$1	232	100	104	12.0000
GGGG	chr14:21463999-21464251(+)$1	252	234	238	12.0000
ffff	chr17:48560969-48561250(+)$1	281	165	169	12.0000
[ddd	chr6:42994941-42995215(+)$1	274	101	105	12.0000
^^^^	chr14:58724508-58724827(+)$1	319	44	48	12.0000

#DB
(.((	chr16:21973589-21973895(+)$1	1	154	158	12.0000
....	chr17:57987832-57988101(+)$1	1	3	7	12.0000
))))	chr11:64888808-64889060(-)$1	1	216	220	12.0000
.(.(	chr16:111169-111449(-)$1	1	239	243	12.0000
((.(	chr6:31124787-31125037(-)$1	1	76	80	12.0000
))))	chr11:66367835-66368154(+)$1	1	275	279	12.0000
.(((	chr1:19570309-19570605(-)$1	1	211	215	12.0000
....	chr1:44442116-44442381(+)$1	1	246	250	12.0000
))))	chr3:12641475-12641755(-)$1	1	197	201	12.0000
....	chr19:46025920-46026209(+)$1	1	228	232	12.0000
((((	chr12:122999468-122999820(-)$1	1	185	189	12.0000
..))	chr1:44441357-44441611(+)$1	1	184	188	12.0000
))))	chr6:30879425-30879694(+)$1	1	60	64	12.0000
))..	chr7:99950459-99950699(+)$1	1	140	144	12.0000
..((	chr12:49496599-49496974(-)$1	1	314	318	12.0000
....	chr5:70766147-70766442(+)$1	1	50	54	12.0000
.)))	chr1:31769939-31770194(+)$1	1	244	248	12.0000
...)	chr11:122932304-122932555(-)$1	1	177	181	12.0000
((((	chr4:166261434-166261661(+)$1	1	37	41	12.0000
))))	chr17:57232243-57232553(-)$1	1	22	26	12.0000
)...	chr6:99851462-99851825(-)$1	1	292	296	12.0000
))))	chr10:121336414-121336714(-)$1	1	126	130	12.0000
))).	chr1:236705921-236706228(+)$1	1	93	97	12.0000
((..	chr11:3049956-3050352(-)$1	1	19	23	12.0000
(...	chr11:118959780-118960066(+)$1	1	37	41	12.0000
.(((	chr12:123087203-123087489(+)$1	1	46	50	12.0000
....	chr3:195789323-195789582(-)$1	1	160	164	12.0000
((((	chr3:195791027-195791314(-)$1	1	152	156	12.0000
....	chr9:114137254-114137522(-)$1	1	209	213	12.0000
((.(	chr5:137903109-137903365(-)$1	1	43	47	12.0000
))).	chr7:6088253-6088584(-)$1	1	58	62	12.0000
((..	chr1:78106944-78107277(-)$1	1	295	299	12.0000
))))	chr4:166248937-166249179(+)$1	1	193	197	12.0000
))))	chr17:65715873-65716211(+)$1	1	259	263	12.0000
((((	chr3:14519979-14520251(+)$1	1	62	66	12.0000
(.((	chr6:31937193-31937446(+)$1	1	155	159	12.0000
...)	chr7:65440826-65441094(-)$1	1	82	86	12.0000
((((	chr7:124537033-124537338(-)$1	1	130	134	12.0000
...(	chr1:28832458-28832702(+)$1	1	37	41	12.0000
))).	chr10:7848834-7849106(+)$1	1	152	156	12.0000
))))	chr11:62651853-62652117(+)$1	1	56	60	12.0000
).))	chr7:102952448-102952711(+)$1	1	72	76	12.0000
.(((	chr2:96568638-96568940(-)$1	1	223	227	12.0000
((((	chr1:52824924-52825191(-)$1	1	209	213	12.0000
((.(	chr11:62572517-62572798(-)$1	1	167	171	12.0000
((((	chr17:3728100-3728356(-)$1	1	98	102	12.0000
))))	chr17:46919103-46919415(+)$1	1	157	161	12.0000
....	chr18:29429363-29429647(-)$1	1	71	75	12.0000
....	chr7:148506334-148506581(-)$1	1	65	69	12.0000
..))	chr11:64535637-64535886(-)$1	1	29	33	12.0000
(...	chr12:51392940-51393254(-)$1	1	57	61	12.0000
....	chr1:25570519-25570807(-)$1	1	85	89	12.0000
....	chr3:141632500-141632816(+)$1	1	137	141	12.0000
)...	chr12:110720437-110720713(+)$1	1	209	213	12.0000
.(((	chr7:73663916-73664222(-)$1	1	259	263	12.0000
))).	chr22:21344709-21344951(+)$1	1	39	43	12.0000
(...	chr19:17865091-17865384(+)$1	1	15	19	12.0000
(.((	chr15:74914762-74915024(+)$1	1	41	45	12.0000
(..(	chr8:29923274-29923554(-)$1	1	6	10	12.0000
....	chr2:38976473-38976734(-)$1	1	93	97	12.0000
....	chr10:96356598-96357034(+)$1	1	159	163	12.0000
)).)	chr12:111160120-111160403(-)$1	1	179	183	12.0000
.)))	chr7:99950499-99950731(+)$1	1	100	104	12.0000
))))	chr14:21463999-21464251(+)$1	1	234	238	12.0000
((((	chr17:48560969-48561250(+)$1	1	165	169	12.0000
.(((	chr6:42994941-42995215(+)$1	1	101	105	12.0000
....	chr14:58724508-58724827(+)$1	1	44	48	12.0000

#PSSM
A : 1.00	
U : 1.00	
U : 1.00	
C : 0.98	c : 0.01	

#score	804.0000000000002
#seq	67
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF322GPD_SF3B1_CDS_m3_run1.nuc.txt

#NT
AUGGUUGUGGGAG	chr8:23425658-23425967(+)$1	309	290	303	26.5000

#otherMatches

#Struct PSSM
EEEEEZZZCCC}B	chr19:54972215-54972522(+)$1	307	95	108	26.5000
::CCC}GGGGGGG	chr8:23425658-23425967(+)$1	309	290	303	26.5000

#DB
)))))...))).)	chr19:54972215-54972522(+)$1	1	95	108	26.5000
..))).)))))))	chr8:23425658-23425967(+)$1	1	290	303	26.5000

#PSSM
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	

#score	53.0
#seq	2
#width	13
#escape	false
#onStep	111
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_CDS_m1_run1.nuc.txt

#NT
CCA	chrX:153590710-153590942(-)$1	232	131	134	9.0000
CCA	chr10:129904197-129904448(-)$1	251	36	39	9.0000
CCA	chr5:137727346-137727616(+)$1	270	70	73	9.0000
CCA	chr17:1565124-1565361(-)$1	237	24	27	9.0000
CCA	chr8:48887200-48887457(+)$1	257	30	33	9.0000
CCA	chr19:18962947-18963203(+)$1	256	9	12	9.0000
CCA	chr6:15497093-15497363(+)$1	270	20	23	9.0000
CCA	chr5:154179055-154179286(+)$1	231	2	5	9.0000
CCA	chr11:46811918-46812159(-)$1	241	35	38	9.0000
cca	chr1:160263090-160263348(-)$1	258	14	17	9.0000
CCA	chr18:19321479-19321870(+)$1	391	48	51	9.0000
CCA	chr7:2411311-2411528(+)$1	217	64	67	9.0000
CCA	chr2:15614099-15614329(-)$1	230	49	52	9.0000
CCA	chr20:35431258-35431598(-)$1	340	12	15	9.0000
CCA	chr1:19478055-19478287(-)$1	232	106	109	9.0000
CCA	chr2:11484161-11484461(-)$1	300	38	41	9.0000
CCA	chr1:156100312-156100623(+)$1	311	5	8	9.0000
CCA	chr17:27010284-27010503(+)$1	219	15	18	9.0000
CCA	chr9:71789190-71789432(+)$1	242	22	25	9.0000
CCA	chr22:23524120-23524353(+)$1	233	27	30	9.0000
CCA	chrX:135579801-135580059(+)$1	258	52	55	9.0000
CCA	chr5:140958579-140958854(-)$1	275	151	154	9.0000
CCA	chr18:657663-657940(+)$1	277	15	18	9.0000
CCA	chr19:59061421-59061635(+)$1	214	94	97	9.0000
CCA	chr17:1559896-1560140(-)$1	244	59	62	9.0000
CCA	chr19:18965607-18965848(+)$1	241	1	4	9.0000
CCA	chr21:47664843-47665104(-)$1	261	22	25	9.0000
CCA	chr3:127324961-127325198(+)$1	237	41	44	9.0000
CCA	chr1:226573104-226573332(-)$1	228	72	75	9.0000
CCA	chr11:65819792-65820061(+)$1	269	24	27	9.0000
CCA	chr1:19446580-19446824(-)$1	244	7	10	9.0000
CCA	chrX:153585789-153586060(-)$1	271	39	42	9.0000
CCA	chr5:10254694-10254952(+)$1	258	51	54	9.0000
CCA	chr12:124829071-124829319(-)$1	248	6	9	9.0000
cca	chr12:6697466-6697688(-)$1	222	12	15	9.0000
CCA	chrX:153588339-153588564(-)$1	225	28	31	9.0000
CCA	chr11:46811617-46811836(-)$1	219	204	207	9.0000
CCA	chr17:78309881-78310170(+)$1	289	14	17	9.0000
CCA	chr11:9406226-9406493(+)$1	267	9	12	9.0000
CCA	chr11:62296340-62296588(-)$1	248	14	17	9.0000
CCA	chr8:9588331-9588638(+)$1	307	59	62	9.0000
CCA	chr14:94526690-94526943(-)$1	253	26	29	9.0000
CCA	chr1:16174462-16174710(+)$1	248	67	70	9.0000
CCA	chr2:44184426-44184670(-)$1	244	98	101	9.0000
CCA	chr12:120591480-120591714(-)$1	234	34	37	9.0000
CCA	chr7:98602653-98602887(+)$1	234	185	188	9.0000
CCA	chr19:15512233-15512488(-)$1	255	44	47	9.0000
CCA	chr16:3721624-3721875(-)$1	251	79	82	9.0000
CCA	chr19:18942872-18943155(+)$1	283	144	147	9.0000
cca	chr9:35724191-35724429(-)$1	238	42	45	9.0000
CCA	chr2:44209275-44209495(-)$1	220	11	14	9.0000
CCA	chr17:4926671-4926959(+)$1	288	1	4	9.0000
CCA	chr5:126113183-126113565(+)$1	382	15	18	9.0000
CCA	chr11:62300618-62300894(-)$1	276	38	41	9.0000
CCA	chr15:74290440-74290723(+)$1	283	40	43	9.0000
CCA	chr5:154179468-154179698(+)$1	230	2	5	9.0000
CCA	chr9:139349958-139350198(-)$1	240	40	43	9.0000
CCA	chr1:6662607-6662876(-)$1	269	76	79	9.0000
CCA	chr2:96962173-96962385(-)$1	212	29	32	9.0000
CCA	chr6:31599535-31599798(+)$1	263	12	15	9.0000
CCA	chr5:154181701-154181952(+)$1	251	89	92	9.0000
CCA	chr9:35703688-35703914(-)$1	226	9	12	9.0000
CCA	chr21:34923280-34923571(+)$1	291	153	156	9.0000
CCA	chr9:139361308-139361549(-)$1	241	16	19	9.0000
CCA	chr21:33688959-33689204(-)$1	245	17	20	9.0000
CCA	chr3:184025377-184025596(+)$1	219	20	23	9.0000
CCA	chr3:184039517-184039759(+)$1	242	4	7	9.0000
CCA	chrX:53595552-53595767(-)$1	215	7	10	9.0000
CCA	chrX:153581894-153582141(-)$1	247	8	11	9.0000
CCA	chr6:7229786-7230051(+)$1	265	14	17	9.0000
CCA	chr17:35482518-35482761(-)$1	243	47	50	9.0000
CCA	chr7:99692930-99693176(-)$1	246	6	9	9.0000
CCA	chr12:49432041-49432280(-)$1	239	13	16	9.0000
CCA	chr12:120593025-120593250(-)$1	225	10	13	9.0000
CCA	chr2:54853032-54853309(+)$1	277	73	76	9.0000
CCA	chr8:145619119-145619354(-)$1	235	40	43	9.0000
CCA	chr8:48744369-48744587(-)$1	218	42	45	9.0000
CCA	chr19:10893535-10893762(+)$1	227	10	13	9.0000
CCA	chr19:932505-932819(+)$1	314	27	30	9.0000
CCA	chr8:145001603-145001924(-)$1	321	1	4	9.0000
CCA	chrX:123215190-123215429(+)$1	239	31	34	9.0000
CCA	chr3:150127345-150127611(+)$1	266	47	50	9.0000
CCA	chr11:65831071-65831301(+)$1	230	2	5	9.0000
CCA	chr6:31759606-31759843(-)$1	237	30	33	9.0000
CCA	chr6:31750060-31750319(-)$1	259	2	5	9.0000
CCA	chr11:609265-609532(+)$1	267	33	36	9.0000
CCA	chr19:50918695-50918923(+)$1	228	71	74	9.0000
CCA	chr10:75855313-75855580(+)$1	267	23	26	9.0000
CCA	chrX:153581167-153581390(-)$1	223	37	40	9.0000
CCA	chr5:154190975-154191211(+)$1	236	65	68	9.0000
CCA	chr19:59060687-59060913(+)$1	226	29	32	9.0000
CCA	chr17:78290944-78291177(+)$1	233	66	69	9.0000
CCA	chr17:7400146-7400392(+)$1	246	50	53	9.0000
CCA	chr14:102549532-102549739(-)$1	207	52	55	9.0000
CCA	chr8:145001092-145001326(-)$1	234	1	4	9.0000
CCA	chr12:49432093-49432360(-)$1	267	12	15	9.0000
CCA	chr11:62489637-62489878(-)$1	241	60	63	9.0000
CCA	chrX:53431884-53432166(-)$1	282	43	46	9.0000
CCA	chr1:55680414-55680672(-)$1	258	10	13	9.0000

#otherMatches

#Struct PSSM
nnn	chr8:48826451-48826694(-)$1	243	214	217	9.0000
ddd	chrX:153590710-153590942(-)$1	232	131	134	9.0000
bb:	chr10:129904197-129904448(-)$1	251	36	39	9.0000
$$$	chr5:137727346-137727616(+)$1	270	70	73	9.0000
D::	chr17:1565124-1565361(-)$1	237	24	27	9.0000
CCf	chr8:48887200-48887457(+)$1	257	30	33	9.0000
CC:	chr19:18962947-18963203(+)$1	256	9	12	9.0000
dd!	chr6:15497093-15497363(+)$1	270	20	23	9.0000
:::	chr5:154179055-154179286(+)$1	231	2	5	9.0000
bb[	chr11:46811918-46812159(-)$1	241	35	38	9.0000
bbo	chr1:160263090-160263348(-)$1	258	14	17	9.0000
FFF	chr18:19321479-19321870(+)$1	391	48	51	9.0000
eee	chr7:2411311-2411528(+)$1	217	64	67	9.0000
qqq	chr2:15614099-15614329(-)$1	230	49	52	9.0000
ddd	chr20:35431258-35431598(-)$1	340	12	15	9.0000
ooo	chr1:19478055-19478287(-)$1	232	106	109	9.0000
b!!	chr2:11484161-11484461(-)$1	300	38	41	9.0000
:ee	chr1:156100312-156100623(+)$1	311	5	8	9.0000
ddd	chr17:27010284-27010503(+)$1	219	15	18	9.0000
bbm	chr9:71789190-71789432(+)$1	242	22	25	9.0000
###	chr22:23524120-23524353(+)$1	233	27	30	9.0000
bb]	chrX:135579801-135580059(+)$1	258	52	55	9.0000
GGG	chr5:140958579-140958854(-)$1	275	151	154	9.0000
DOO	chr18:657663-657940(+)$1	277	15	18	9.0000
ccn	chr19:59061421-59061635(+)$1	214	94	97	9.0000
fff	chr17:1559896-1560140(-)$1	244	59	62	9.0000
:bb	chr19:18965607-18965848(+)$1	241	1	4	9.0000
ggg	chr21:47664843-47665104(-)$1	261	22	25	9.0000
eee	chr3:127324961-127325198(+)$1	237	41	44	9.0000
bb]	chr1:226573104-226573332(-)$1	228	72	75	9.0000
bbB	chr11:65819792-65820061(+)$1	269	24	27	9.0000
EEE	chr1:19446580-19446824(-)$1	244	7	10	9.0000
dnn	chrX:153585789-153586060(-)$1	271	39	42	9.0000
fff	chr5:10254694-10254952(+)$1	258	51	54	9.0000
bb:	chr12:124829071-124829319(-)$1	248	6	9	9.0000
CCC	chr12:6697466-6697688(-)$1	222	12	15	9.0000
bb]	chrX:153588339-153588564(-)$1	225	28	31	9.0000
:::	chr11:46811617-46811836(-)$1	219	204	207	9.0000
BBM	chr17:78309881-78310170(+)$1	289	14	17	9.0000
DD:	chr11:9406226-9406493(+)$1	267	9	12	9.0000
ccc	chr11:62296340-62296588(-)$1	248	14	17	9.0000
d]e	chr8:9588331-9588638(+)$1	307	59	62	9.0000
C::	chr14:94526690-94526943(-)$1	253	26	29	9.0000
cc]	chr1:16174462-16174710(+)$1	248	67	70	9.0000
::e	chr2:44184426-44184670(-)$1	244	98	101	9.0000
DD:	chr12:120591480-120591714(-)$1	234	34	37	9.0000
ddd	chr7:98602653-98602887(+)$1	234	185	188	9.0000
ooo	chr19:15512233-15512488(-)$1	255	44	47	9.0000
ff:	chr16:3721624-3721875(-)$1	251	79	82	9.0000
CCC	chr19:18942872-18943155(+)$1	283	144	147	9.0000
bb:	chr9:35724191-35724429(-)$1	238	42	45	9.0000
ggg	chr2:44209275-44209495(-)$1	220	11	14	9.0000
EEE	chr17:4926671-4926959(+)$1	288	1	4	9.0000
bb[	chr5:126113183-126113565(+)$1	382	15	18	9.0000
cc:	chr11:62300618-62300894(-)$1	276	38	41	9.0000
OOO	chr15:74290440-74290723(+)$1	283	40	43	9.0000
:::	chr5:154179468-154179698(+)$1	230	2	5	9.0000
ggg	chr9:139349958-139350198(-)$1	240	40	43	9.0000
ddd	chr1:6662607-6662876(-)$1	269	76	79	9.0000
ddd	chr2:96962173-96962385(-)$1	212	29	32	9.0000
dBB	chr6:31599535-31599798(+)$1	263	12	15	9.0000
bee	chr5:154181701-154181952(+)$1	251	89	92	9.0000
hhh	chr9:35703688-35703914(-)$1	226	9	12	9.0000
hhh	chr21:34923280-34923571(+)$1	291	153	156	9.0000
eeb	chr9:139361308-139361549(-)$1	241	16	19	9.0000
ooo	chr21:33688959-33689204(-)$1	245	17	20	9.0000
CCC	chr3:184025377-184025596(+)$1	219	20	23	9.0000
:::	chr3:184039517-184039759(+)$1	242	4	7	9.0000
EE{	chrX:53595552-53595767(-)$1	215	7	10	9.0000
MMM	chrX:153581894-153582141(-)$1	247	8	11	9.0000
rrr	chr6:7229786-7230051(+)$1	265	14	17	9.0000
!==	chr17:35482518-35482761(-)$1	243	47	50	9.0000
!!b	chr7:99692930-99693176(-)$1	246	6	9	9.0000
EEE	chr12:49432041-49432280(-)$1	239	13	16	9.0000
I::	chr12:120593025-120593250(-)$1	225	10	13	9.0000
FFF	chr2:54853032-54853309(+)$1	277	73	76	9.0000
NNN	chr8:145619119-145619354(-)$1	235	40	43	9.0000
:FF	chr8:48744369-48744587(-)$1	218	42	45	9.0000
:::	chr19:10893535-10893762(+)$1	227	10	13	9.0000
ggg	chr19:932505-932819(+)$1	314	27	30	9.0000
EEE	chr8:145001603-145001924(-)$1	321	1	4	9.0000
WWW	chrX:123215190-123215429(+)$1	239	31	34	9.0000
)))	chr3:150127345-150127611(+)$1	266	47	50	9.0000
:::	chr11:65831071-65831301(+)$1	230	2	5	9.0000
!!e	chr6:31759606-31759843(-)$1	237	30	33	9.0000
EEE	chr6:31750060-31750319(-)$1	259	2	5	9.0000
IKK	chr11:609265-609532(+)$1	267	33	36	9.0000
III	chr19:50918695-50918923(+)$1	228	71	74	9.0000
boo	chr10:75855313-75855580(+)$1	267	23	26	9.0000
e]c	chrX:153581167-153581390(-)$1	223	37	40	9.0000
hhh	chr5:154190975-154191211(+)$1	236	65	68	9.0000
amm	chr19:59060687-59060913(+)$1	226	29	32	9.0000
ddd	chr17:78290944-78291177(+)$1	233	66	69	9.0000
ff2	chr17:7400146-7400392(+)$1	246	50	53	9.0000
bb!	chr14:102549532-102549739(-)$1	207	52	55	9.0000
CCC	chr8:145001092-145001326(-)$1	234	1	4	9.0000
ppp	chr12:49432093-49432360(-)$1	267	12	15	9.0000
hhh	chr11:62489637-62489878(-)$1	241	60	63	9.0000
BB{	chrX:53431884-53432166(-)$1	282	43	46	9.0000
FFK	chr1:55680414-55680672(-)$1	258	10	13	9.0000

#DB
...	chr8:48826451-48826694(-)$1	1	214	217	9.0000
(((	chrX:153590710-153590942(-)$1	1	131	134	9.0000
)).	chr10:129904197-129904448(-)$1	1	36	39	9.0000
...	chr5:137727346-137727616(+)$1	1	70	73	9.0000
(..	chr17:1565124-1565361(-)$1	1	24	27	9.0000
(((	chr8:48887200-48887457(+)$1	1	30	33	9.0000
((.	chr19:18962947-18963203(+)$1	1	9	12	9.0000
((.	chr6:15497093-15497363(+)$1	1	20	23	9.0000
...	chr5:154179055-154179286(+)$1	1	2	5	9.0000
((.	chr11:46811918-46812159(-)$1	1	35	38	9.0000
((.	chr1:160263090-160263348(-)$1	1	14	17	9.0000
(((	chr18:19321479-19321870(+)$1	1	48	51	9.0000
(((	chr7:2411311-2411528(+)$1	1	64	67	9.0000
...	chr2:15614099-15614329(-)$1	1	49	52	9.0000
)))	chr20:35431258-35431598(-)$1	1	12	15	9.0000
...	chr1:19478055-19478287(-)$1	1	106	109	9.0000
(..	chr2:11484161-11484461(-)$1	1	38	41	9.0000
.((	chr1:156100312-156100623(+)$1	1	5	8	9.0000
)))	chr17:27010284-27010503(+)$1	1	15	18	9.0000
((.	chr9:71789190-71789432(+)$1	1	22	25	9.0000
...	chr22:23524120-23524353(+)$1	1	27	30	9.0000
)).	chrX:135579801-135580059(+)$1	1	52	55	9.0000
)))	chr5:140958579-140958854(-)$1	1	151	154	9.0000
(..	chr18:657663-657940(+)$1	1	15	18	9.0000
((.	chr19:59061421-59061635(+)$1	1	94	97	9.0000
)))	chr17:1559896-1560140(-)$1	1	59	62	9.0000
.((	chr19:18965607-18965848(+)$1	1	1	4	9.0000
)))	chr21:47664843-47665104(-)$1	1	22	25	9.0000
(((	chr3:127324961-127325198(+)$1	1	41	44	9.0000
)).	chr1:226573104-226573332(-)$1	1	72	75	9.0000
))(	chr11:65819792-65820061(+)$1	1	24	27	9.0000
(((	chr1:19446580-19446824(-)$1	1	7	10	9.0000
(..	chrX:153585789-153586060(-)$1	1	39	42	9.0000
(((	chr5:10254694-10254952(+)$1	1	51	54	9.0000
)).	chr12:124829071-124829319(-)$1	1	6	9	9.0000
(((	chr12:6697466-6697688(-)$1	1	12	15	9.0000
)).	chrX:153588339-153588564(-)$1	1	28	31	9.0000
...	chr11:46811617-46811836(-)$1	1	204	207	9.0000
((.	chr17:78309881-78310170(+)$1	1	14	17	9.0000
((.	chr11:9406226-9406493(+)$1	1	9	12	9.0000
(((	chr11:62296340-62296588(-)$1	1	14	17	9.0000
).)	chr8:9588331-9588638(+)$1	1	59	62	9.0000
(..	chr14:94526690-94526943(-)$1	1	26	29	9.0000
)).	chr1:16174462-16174710(+)$1	1	67	70	9.0000
..(	chr2:44184426-44184670(-)$1	1	98	101	9.0000
((.	chr12:120591480-120591714(-)$1	1	34	37	9.0000
)))	chr7:98602653-98602887(+)$1	1	185	188	9.0000
...	chr19:15512233-15512488(-)$1	1	44	47	9.0000
)).	chr16:3721624-3721875(-)$1	1	79	82	9.0000
(((	chr19:18942872-18943155(+)$1	1	144	147	9.0000
)).	chr9:35724191-35724429(-)$1	1	42	45	9.0000
(((	chr2:44209275-44209495(-)$1	1	11	14	9.0000
(((	chr17:4926671-4926959(+)$1	1	1	4	9.0000
((.	chr5:126113183-126113565(+)$1	1	15	18	9.0000
)).	chr11:62300618-62300894(-)$1	1	38	41	9.0000
...	chr15:74290440-74290723(+)$1	1	40	43	9.0000
...	chr5:154179468-154179698(+)$1	1	2	5	9.0000
)))	chr9:139349958-139350198(-)$1	1	40	43	9.0000
(((	chr1:6662607-6662876(-)$1	1	76	79	9.0000
)))	chr2:96962173-96962385(-)$1	1	29	32	9.0000
)((	chr6:31599535-31599798(+)$1	1	12	15	9.0000
)))	chr5:154181701-154181952(+)$1	1	89	92	9.0000
(((	chr9:35703688-35703914(-)$1	1	9	12	9.0000
)))	chr21:34923280-34923571(+)$1	1	153	156	9.0000
(((	chr9:139361308-139361549(-)$1	1	16	19	9.0000
...	chr21:33688959-33689204(-)$1	1	17	20	9.0000
(((	chr3:184025377-184025596(+)$1	1	20	23	9.0000
...	chr3:184039517-184039759(+)$1	1	4	7	9.0000
((.	chrX:53595552-53595767(-)$1	1	7	10	9.0000
...	chrX:153581894-153582141(-)$1	1	8	11	9.0000
...	chr6:7229786-7230051(+)$1	1	14	17	9.0000
.((	chr17:35482518-35482761(-)$1	1	47	50	9.0000
..(	chr7:99692930-99693176(-)$1	1	6	9	9.0000
(((	chr12:49432041-49432280(-)$1	1	13	16	9.0000
(..	chr12:120593025-120593250(-)$1	1	10	13	9.0000
(((	chr2:54853032-54853309(+)$1	1	73	76	9.0000
...	chr8:145619119-145619354(-)$1	1	40	43	9.0000
.((	chr8:48744369-48744587(-)$1	1	42	45	9.0000
...	chr19:10893535-10893762(+)$1	1	10	13	9.0000
(((	chr19:932505-932819(+)$1	1	27	30	9.0000
(((	chr8:145001603-145001924(-)$1	1	1	4	9.0000
...	chrX:123215190-123215429(+)$1	1	31	34	9.0000
...	chr3:150127345-150127611(+)$1	1	47	50	9.0000
...	chr11:65831071-65831301(+)$1	1	2	5	9.0000
..(	chr6:31759606-31759843(-)$1	1	30	33	9.0000
(((	chr6:31750060-31750319(-)$1	1	2	5	9.0000
(..	chr11:609265-609532(+)$1	1	33	36	9.0000
(((	chr19:50918695-50918923(+)$1	1	71	74	9.0000
(..	chr10:75855313-75855580(+)$1	1	23	26	9.0000
).)	chrX:153581167-153581390(-)$1	1	37	40	9.0000
(((	chr5:154190975-154191211(+)$1	1	65	68	9.0000
(..	chr19:59060687-59060913(+)$1	1	29	32	9.0000
(((	chr17:78290944-78291177(+)$1	1	66	69	9.0000
)).	chr17:7400146-7400392(+)$1	1	50	53	9.0000
((.	chr14:102549532-102549739(-)$1	1	52	55	9.0000
(((	chr8:145001092-145001326(-)$1	1	1	4	9.0000
...	chr12:49432093-49432360(-)$1	1	12	15	9.0000
(((	chr11:62489637-62489878(-)$1	1	60	63	9.0000
((.	chrX:53431884-53432166(-)$1	1	43	46	9.0000
((.	chr1:55680414-55680672(-)$1	1	10	13	9.0000

#PSSM
C : 0.97	c : 0.03	
C : 0.97	c : 0.03	
A : 0.97	a : 0.03	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_transcript_m3_run1.nuc.txt

#NT
gaaaaggagaa	chr14:73570018-73570281(+)$1	263	19	30	18.3571
GACAAAGAACA	chr12:123003306-123003544(-)$1	238	28	39	16.1250
GAAAAGGAAGG	chr13:107211843-107212079(-)$1	236	167	178	17.2857
GAAUAGAAAGA	chr12:104340582-104340819(+)$1	237	87	98	14.6964
UAUAAGGAAAA	chr10:129907068-129907357(-)$1	289	47	58	15.0535
gaagaagaaaa	chr17:16029295-16029582(-)$1	287	137	148	18.9821
GAAAAUUAAAA	chr7:23561625-23561976(-)$1	351	17	28	16.3928
gaaaauggaaa	chr11:65267057-65267263(+)$1	206	8	19	15.5892
GAAGAGGAAGA	chr2:99980158-99980426(+)$1	268	110	121	18.8928
gaagaggaaga	chr4:88255518-88255846(-)$1	328	155	166	18.8928
gagaaggagaa	chr19:4422582-4422892(+)$1	310	142	153	14.9642
GAAAAGCAACG	chr16:57206063-57206343(-)$1	280	133	144	12.9999
gaugaagaaUA	chr4:174253129-174253350(-)$1	221	108	119	12.7321
GAAAGAGAAAA	chr15:93482707-93482926(+)$1	219	147	158	16.7499
GAAAACAAAGA	chr7:72892127-72892371(-)$1	244	30	41	15.3214
GAACAGGAUAA	chr1:24972447-24972663(+)$1	216	39	50	15.5892
GAAAAAGAAAC	chr7:72891991-72892256(-)$1	265	106	117	17.2857
GAAAAGAAAAA	chr6:18249779-18250001(-)$1	222	63	74	19.4285
gaaguggaaaa	chr11:65267084-65267290(+)$1	206	41	52	15.5892
GGAAAGGAAAA	chr10:120809213-120809485(-)$1	272	76	87	18.3571
gaugaagaaga	chr9:100773454-100773665(+)$1	211	151	162	13.8928
GAAAAGGAAAU	chr10:70719723-70719989(+)$1	266	156	167	18.6250
gacaaggaaaa	chr10:127512033-127512408(+)$1	375	219	230	19.1607
GAGAAAAAACA	chr19:2114018-2114274(-)$1	256	91	102	13.0000
GAAAAGGAACA	chr18:47015630-47015882(-)$1	252	100	111	21.1249
gaaaaugaaaa	chr11:65267247-65267450(+)$1	203	90	101	20.4107
gaaaaugaaaa	chr11:65267176-65267383(+)$1	207	161	172	20.4107
GAGAAGGAACA	chr7:155493362-155493690(+)$1	328	250	261	17.7321
GAACAAGAACA	chr17:77808436-77808743(-)$1	307	64	75	17.0178
gaagaggaaga	chr6:52132646-52132866(-)$1	220	192	203	18.8928
GAGAAGGAAAA	chr1:186315289-186315521(-)$1	232	192	203	19.4285
AAAAAGGAAAA	chr6:135786939-135787322(-)$1	383	320	331	18.8035
gaaaagaaaga	chr6:125582097-125582427(+)$1	330	29	40	17.9999
GAAAAGAAAGA	chr5:134109393-134109623(+)$1	230	32	43	17.9999
GAACAGGAACA	chr3:37366062-37366295(+)$1	233	6	17	18.3571
GAGAAAGAAAA	chr16:2808887-2809148(+)$1	261	128	139	18.0892
GGAAAGGAAAA	chr10:120809313-120809544(-)$1	231	135	146	18.3571
GAAAAAGAAGA	chr1:205689598-205689851(-)$1	253	84	95	20.0535
gaaaaagaaaa	chr1:235392467-235392751(-)$1	284	170	181	21.4821
GACCAAGAACa	chr8:124382161-124382365(-)$1	204	121	132	13.3571
GAAAAGAAAGA	chr18:55282950-55283199(-)$1	249	139	150	17.9999
AAAAAUGAAAA	chr11:58379033-58379317(+)$1	284	195	206	16.3928
GAACAGGAACA	chr15:93480723-93480957(+)$1	234	55	66	18.3571
GAAAACGAAAG	chr2:232325135-232325372(-)$1	237	118	129	16.0357
GAACAAGAAAA	chr12:80214451-80214803(-)$1	352	147	158	18.7142
gaagaggaaga	chr22:48249232-48249520(+)$1	288	131	142	18.8928
GAACAGGAAAA	chr7:91706170-91706416(+)$1	246	127	138	20.0535
UAAAAGAAAAA	chr6:90368392-90368711(-)$1	319	93	104	15.3214
GGAGAAGAAAA	chr6:30550083-30550355(+)$1	272	176	187	14.5178
GAAAAGGAUGA	chr3:37367774-37368022(+)$1	248	28	39	16.9285
gaagaagaacc	chr12:104341065-104341284(+)$1	219	38	49	13.0892
AAAAAGGAAAA	chr9:15474000-15474301(-)$1	301	213	224	18.8035
GAGAAGGAACU	chr3:37368778-37369033(+)$1	255	128	139	13.5357
UAAAAAGAAAA	chr6:4032326-4032619(+)$1	293	15	26	17.3750
AAAAAGGAAGA	chr10:12077043-12077324(-)$1	281	97	108	17.3749

#otherMatches

#Struct PSSM
^^^^^^^^^^^	chr15:76165668-76165958(+)$1	290	178	189	21.4821
:::::DDDD::	chr14:73570018-73570281(+)$1	263	19	30	18.3571
DDD::::::a[	chr12:123003306-123003544(-)$1	238	28	39	16.1250
>>>ccc22ccc	chr13:107211843-107212079(-)$1	236	167	178	17.2857
="""ffffff"	chr12:104340582-104340819(+)$1	237	87	98	14.6964
wwwwwwwwwww	chr10:129907068-129907357(-)$1	289	47	58	15.0535
::::::::::A	chr17:16029295-16029582(-)$1	287	137	148	18.9821
LLLDDDDLLLE	chr7:23561625-23561976(-)$1	351	17	28	16.3928
:::::::::::	chr11:65267057-65267263(+)$1	206	8	19	15.5892
GGGGGGEEEEE	chr2:99980158-99980426(+)$1	268	110	121	18.8928
))ccc!!bb[a	chr4:88255518-88255846(-)$1	328	155	166	18.8928
C::::::::::	chr19:4422582-4422892(+)$1	310	142	153	14.9642
EELLLBBLLLB	chr16:57206063-57206343(-)$1	280	133	144	12.9999
"bbrrrrrrrr	chr4:174253129-174253350(-)$1	221	108	119	12.7321
D::::::::::	chr15:93482707-93482926(+)$1	219	147	158	16.7499
cc[dddd!!gg	chr7:72892127-72892371(-)$1	244	30	41	15.3214
{EEEEEKKA{C	chr1:24972447-24972663(+)$1	216	39	50	15.5892
D@@@@@@@@@@	chr7:72891991-72892256(-)$1	265	106	117	17.2857
cc22dddd555	chr6:18249779-18250001(-)$1	222	63	74	19.4285
B::::::::::	chr11:65267084-65267290(+)$1	206	41	52	15.5892
hhhhhhhbb##	chr10:120809213-120809485(-)$1	272	76	87	18.3571
d]dddd>>>>>	chr9:100773454-100773665(+)$1	211	151	162	13.8928
+++++++++++	chr10:70719723-70719989(+)$1	266	156	167	18.6250
DDZZZDDDD~~	chr10:127512033-127512408(+)$1	375	219	230	19.1607
:::::::::::	chr19:2114018-2114274(-)$1	256	91	102	13.0000
b"""ggggggg	chr18:47015630-47015882(-)$1	252	100	111	21.1249
e"""bbmmmmb	chr11:65267247-65267450(+)$1	203	90	101	20.4107
:::::::::::	chr11:65267176-65267383(+)$1	207	161	172	20.4107
ffffff!!bb"	chr7:155493362-155493690(+)$1	328	250	261	17.7321
:::::::::::	chr17:77808436-77808743(-)$1	307	64	75	17.0178
YDDDD~~~~HH	chr6:52132646-52132866(-)$1	220	192	203	18.8928
dd:::aooooo	chr1:186315289-186315521(-)$1	232	192	203	19.4285
77777dddddd	chr6:135786939-135787322(-)$1	383	320	331	18.8035
:::::::::::	chr6:125582097-125582427(+)$1	330	29	40	17.9999
:::::::::::	chr5:134109393-134109623(+)$1	230	32	43	17.9999
:::::::::::	chr3:37366062-37366295(+)$1	233	6	17	18.3571
ggg::::::GG	chr16:2808887-2809148(+)$1	261	128	139	18.0892
:::::::::::	chr10:120809313-120809544(-)$1	231	135	146	18.3571
ee]ffffffa!	chr1:205689598-205689851(-)$1	253	84	95	20.0535
????FFFFFFZ	chr1:235392467-235392751(-)$1	284	170	181	21.4821
mccc0000000	chr8:124382161-124382365(-)$1	204	121	132	13.3571
:::::::::FF	chr18:55282950-55283199(-)$1	249	139	150	17.9999
:::::a[gggg	chr11:58379033-58379317(+)$1	284	195	206	16.3928
]bb22iiiiii	chr15:93480723-93480957(+)$1	234	55	66	18.3571
+++++++++++	chr2:232325135-232325372(-)$1	237	118	129	16.0357
g22ccc333bb	chr12:80214451-80214803(-)$1	352	147	158	18.7142
^^^^^^^^^^^	chr22:48249232-48249520(+)$1	288	131	142	18.8928
cssssssssss	chr7:91706170-91706416(+)$1	246	127	138	20.0535
wwwwwwwwwww	chr6:90368392-90368711(-)$1	319	93	104	15.3214
:::::::::::	chr6:30550083-30550355(+)$1	272	176	187	14.5178
pppppppffff	chr3:37367774-37368022(+)$1	248	28	39	16.9285
^^^^^^^^eee	chr12:104341065-104341284(+)$1	219	38	49	13.0892
uuuuuuuuuuu	chr9:15474000-15474301(-)$1	301	213	224	18.8035
hh!!cccoooo	chr3:37368778-37369033(+)$1	255	128	139	13.5357
:::::::::::	chr6:4032326-4032619(+)$1	293	15	26	17.3750
:::::::::::	chr10:12077043-12077324(-)$1	281	97	108	17.3749

#DB
...........	chr15:76165668-76165958(+)$1	1	178	189	21.4821
.....((((..	chr14:73570018-73570281(+)$1	1	19	30	18.3571
(((......(.	chr12:123003306-123003544(-)$1	1	28	39	16.1250
...)))..)))	chr13:107211843-107212079(-)$1	1	167	178	17.2857
(...((((((.	chr12:104340582-104340819(+)$1	1	87	98	14.6964
...........	chr10:129907068-129907357(-)$1	1	47	58	15.0535
..........(	chr17:16029295-16029582(-)$1	1	137	148	18.9821
...((((...(	chr7:23561625-23561976(-)$1	1	17	28	16.3928
...........	chr11:65267057-65267263(+)$1	1	8	19	15.5892
(((((((((((	chr2:99980158-99980426(+)$1	1	110	121	18.8928
..(((..((.(	chr4:88255518-88255846(-)$1	1	155	166	18.8928
(..........	chr19:4422582-4422892(+)$1	1	142	153	14.9642
((...((...(	chr16:57206063-57206343(-)$1	1	133	144	12.9999
.((........	chr4:174253129-174253350(-)$1	1	108	119	12.7321
)..........	chr15:93482707-93482926(+)$1	1	147	158	16.7499
((.((((..((	chr7:72892127-72892371(-)$1	1	30	41	15.3214
.(((((..(.(	chr1:24972447-24972663(+)$1	1	39	50	15.5892
)..........	chr7:72891991-72892256(-)$1	1	106	117	17.2857
))..))))...	chr6:18249779-18250001(-)$1	1	63	74	19.4285
(..........	chr11:65267084-65267290(+)$1	1	41	52	15.5892
(((((((((..	chr10:120809213-120809485(-)$1	1	76	87	18.3571
).)))).....	chr9:100773454-100773665(+)$1	1	151	162	13.8928
...........	chr10:70719723-70719989(+)$1	1	156	167	18.6250
))...))))..	chr10:127512033-127512408(+)$1	1	219	230	19.1607
...........	chr19:2114018-2114274(-)$1	1	91	102	13.0000
(...(((((((	chr18:47015630-47015882(-)$1	1	100	111	21.1249
(...((....)	chr11:65267247-65267450(+)$1	1	90	101	20.4107
...........	chr11:65267176-65267383(+)$1	1	161	172	20.4107
((((((..((.	chr7:155493362-155493690(+)$1	1	250	261	17.7321
...........	chr17:77808436-77808743(-)$1	1	64	75	17.0178
.))))....))	chr6:52132646-52132866(-)$1	1	192	203	18.8928
))...(.....	chr1:186315289-186315521(-)$1	1	192	203	19.4285
.....))))))	chr6:135786939-135787322(-)$1	1	320	331	18.8035
...........	chr6:125582097-125582427(+)$1	1	29	40	17.9999
...........	chr5:134109393-134109623(+)$1	1	32	43	17.9999
...........	chr3:37366062-37366295(+)$1	1	6	17	18.3571
)))......))	chr16:2808887-2809148(+)$1	1	128	139	18.0892
...........	chr10:120809313-120809544(-)$1	1	135	146	18.3571
)).))))))(.	chr1:205689598-205689851(-)$1	1	84	95	20.0535
....)))))).	chr1:235392467-235392751(-)$1	1	170	181	21.4821
.))).......	chr8:124382161-124382365(-)$1	1	121	132	13.3571
.........))	chr18:55282950-55283199(-)$1	1	139	150	17.9999
.....(.((((	chr11:58379033-58379317(+)$1	1	195	206	16.3928
.))..))))))	chr15:93480723-93480957(+)$1	1	55	66	18.3571
...........	chr2:232325135-232325372(-)$1	1	118	129	16.0357
)..)))...))	chr12:80214451-80214803(-)$1	1	147	158	18.7142
...........	chr22:48249232-48249520(+)$1	1	131	142	18.8928
(..........	chr7:91706170-91706416(+)$1	1	127	138	20.0535
...........	chr6:90368392-90368711(-)$1	1	93	104	15.3214
...........	chr6:30550083-30550355(+)$1	1	176	187	14.5178
.......))))	chr3:37367774-37368022(+)$1	1	28	39	16.9285
........)))	chr12:104341065-104341284(+)$1	1	38	49	13.0892
...........	chr9:15474000-15474301(-)$1	1	213	224	18.8035
((..(((....	chr3:37368778-37369033(+)$1	1	128	139	13.5357
...........	chr6:4032326-4032619(+)$1	1	15	26	17.3750
...........	chr10:12077043-12077324(-)$1	1	97	108	17.3749

#PSSM
G : 0.58	g : 0.28	A : 0.07	U : 0.05	
A : 0.66	a : 0.28	G : 0.05	
A : 0.57	a : 0.21	G : 0.08	C : 0.03	u : 0.03	U : 0.01	g : 0.01	c : 0.01	
A : 0.53	a : 0.14	g : 0.14	C : 0.12	G : 0.03	U : 0.01	
A : 0.69	a : 0.26	G : 0.01	u : 0.01	
G : 0.42	A : 0.21	g : 0.14	a : 0.08	u : 0.05	U : 0.03	C : 0.03	
G : 0.55	g : 0.26	A : 0.12	U : 0.01	C : 0.01	a : 0.01	
A : 0.71	a : 0.26	g : 0.01	
A : 0.67	a : 0.24	g : 0.03	U : 0.03	
A : 0.37	C : 0.17	a : 0.16	G : 0.16	g : 0.08	U : 0.01	c : 0.01	
A : 0.60	a : 0.26	G : 0.05	U : 0.03	C : 0.01	c : 0.01	

#score	968.3571428571429
#seq	56
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_UTR_m2_run2.nuc.txt

#NT
GGAGG	chr16:72142227-72142502(+)$1	275	89	94	14.9999
GGAGG	chr16:23505445-23505722(-)$1	277	198	203	14.9999
GGAGG	chr16:67976993-67977279(-)$1	286	25	30	14.9999
GGAGG	chr13:50571174-50571467(+)$1	293	53	58	14.9999
GGAGG	chr17:77078044-77078299(+)$1	255	77	82	14.9999
GGAGG	chr17:79868892-79869126(-)$1	234	138	143	14.9999
GGAGG	chr2:128180682-128180991(+)$1	309	42	47	14.9999
GGAGG	chr7:150774541-150774786(-)$1	245	104	109	14.9999
GGAGG	chr9:140347388-140347614(-)$1	226	58	63	14.9999
GGAGG	chr17:79865281-79865532(-)$1	251	17	22	14.9999
GGAGG	chr19:54024502-54024758(+)$1	256	10	15	14.9999
ggagg	chr17:74732712-74732968(-)$1	256	112	117	14.9999
ggagg	chr14:23791027-23791290(+)$1	263	11	16	14.9999
GGAGG	chr9:140347334-140347564(-)$1	230	8	13	14.9999
GGAGG	chr9:116138863-116139110(-)$1	247	85	90	14.9999
GGAGG	chr5:179050391-179050697(-)$1	306	145	150	14.9999
GGAGG	chr14:54418396-54418665(-)$1	269	0	5	14.9999
GGAGG	chr9:139904666-139904966(-)$1	300	56	61	14.9999
GGAGG	chr20:57226350-57226602(+)$1	252	0	5	14.9999
GGAGG	chr4:144106170-144106394(+)$1	224	50	55	14.9999
GGAGG	chr7:150777605-150777858(-)$1	253	9	14	14.9999
GGAGG	chr11:67810675-67810936(+)$1	261	17	22	14.9999
GGAGG	chr19:46357608-46357893(-)$1	285	11	16	14.9999
GGAGG	chr16:29816008-29816262(+)$1	254	35	40	14.9999
GGAGG	chr9:135930323-135930613(+)$1	290	216	221	14.9999
GGAGG	chr11:721152-721409(+)$1	257	7	12	14.9999

#otherMatches

#Struct PSSM
bb[cc	chr9:140347364-140347588(-)$1	224	32	37	14.9999
d[ccc	chr16:72142227-72142502(+)$1	275	89	94	14.9999
CCCBB	chr16:23505445-23505722(-)$1	277	198	203	14.9999
CC{BB	chr16:67976993-67977279(-)$1	286	25	30	14.9999
cc]cc	chr13:50571174-50571467(+)$1	293	53	58	14.9999
fffff	chr17:77078044-77078299(+)$1	255	77	82	14.9999
b[eee	chr17:79868892-79869126(-)$1	234	138	143	14.9999
nnnng	chr2:128180682-128180991(+)$1	309	42	47	14.9999
hhhhh	chr7:150774541-150774786(-)$1	245	104	109	14.9999
a[ddd	chr9:140347388-140347614(-)$1	226	58	63	14.9999
nnnnc	chr17:79865281-79865532(-)$1	251	17	22	14.9999
DKKFF	chr19:54024502-54024758(+)$1	256	10	15	14.9999
GGG{D	chr17:74732712-74732968(-)$1	256	112	117	14.9999
JJJJJ	chr14:23791027-23791290(+)$1	263	11	16	14.9999
:::cc	chr9:140347334-140347564(-)$1	230	8	13	14.9999
[ffff	chr9:116138863-116139110(-)$1	247	85	90	14.9999
llddd	chr5:179050391-179050697(-)$1	306	145	150	14.9999
EEEEE	chr14:54418396-54418665(-)$1	269	0	5	14.9999
{AKKB	chr9:139904666-139904966(-)$1	300	56	61	14.9999
:::CC	chr20:57226350-57226602(+)$1	252	0	5	14.9999
eeeee	chr4:144106170-144106394(+)$1	224	50	55	14.9999
DDDDc	chr7:150777605-150777858(-)$1	253	9	14	14.9999
ggggg	chr11:67810675-67810936(+)$1	261	17	22	14.9999
::::e	chr19:46357608-46357893(-)$1	285	11	16	14.9999
gg!!g	chr16:29816008-29816262(+)$1	254	35	40	14.9999
cdddd	chr9:135930323-135930613(+)$1	290	216	221	14.9999
cc[a[	chr11:721152-721409(+)$1	257	7	12	14.9999

#DB
((.((	chr9:140347364-140347588(-)$1	1	32	37	14.9999
(.(((	chr16:72142227-72142502(+)$1	1	89	94	14.9999
)))))	chr16:23505445-23505722(-)$1	1	198	203	14.9999
((.((	chr16:67976993-67977279(-)$1	1	25	30	14.9999
)).))	chr13:50571174-50571467(+)$1	1	53	58	14.9999
(((((	chr17:77078044-77078299(+)$1	1	77	82	14.9999
(.(((	chr17:79868892-79869126(-)$1	1	138	143	14.9999
....)	chr2:128180682-128180991(+)$1	1	42	47	14.9999
)))))	chr7:150774541-150774786(-)$1	1	104	109	14.9999
(.(((	chr9:140347388-140347614(-)$1	1	58	63	14.9999
....)	chr17:79865281-79865532(-)$1	1	17	22	14.9999
(..((	chr19:54024502-54024758(+)$1	1	10	15	14.9999
(((.(	chr17:74732712-74732968(-)$1	1	112	117	14.9999
(((((	chr14:23791027-23791290(+)$1	1	11	16	14.9999
...((	chr9:140347334-140347564(-)$1	1	8	13	14.9999
.((((	chr9:116138863-116139110(-)$1	1	85	90	14.9999
..)))	chr5:179050391-179050697(-)$1	1	145	150	14.9999
(((((	chr14:54418396-54418665(-)$1	1	0	5	14.9999
.(..(	chr9:139904666-139904966(-)$1	1	56	61	14.9999
...((	chr20:57226350-57226602(+)$1	1	0	5	14.9999
(((((	chr4:144106170-144106394(+)$1	1	50	55	14.9999
(((((	chr7:150777605-150777858(-)$1	1	9	14	14.9999
(((((	chr11:67810675-67810936(+)$1	1	17	22	14.9999
....(	chr19:46357608-46357893(-)$1	1	11	16	14.9999
((..(	chr16:29816008-29816262(+)$1	1	35	40	14.9999
(((((	chr9:135930323-135930613(+)$1	1	216	221	14.9999
((.(.	chr11:721152-721409(+)$1	1	7	12	14.9999

#PSSM
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	

#score	404.9999999999999
#seq	27
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_UTR_m1_run1.nuc.txt

#NT
gagg	chr1:15250644-15250898(+)$1	254	97	101	12.0000
GAGG	chr9:139715621-139715894(+)$1	273	51	55	12.0000
GAGG	chr19:2270264-2270515(+)$1	251	200	204	12.0000
GAGG	chr17:42255544-42255813(-)$1	269	16	20	12.0000
GAGG	chr19:2811949-2812266(+)$1	317	18	22	12.0000
GAGG	chr12:96792916-96793159(-)$1	243	34	38	12.0000
gagg	chr1:206858254-206858556(+)$1	302	100	104	12.0000
GAGG	chr12:125398435-125398719(-)$1	284	171	175	12.0000
GAGG	chr12:96793066-96793328(-)$1	262	28	32	12.0000
GAGG	chr4:763292-763532(-)$1	240	16	20	12.0000
GAGG	chr19:1395004-1395272(+)$1	268	81	85	12.0000
GAGG	chr1:2326313-2326585(+)$1	272	105	109	12.0000
GAGG	chr15:74725783-74726056(-)$1	273	50	54	12.0000
GAGG	chr17:73149922-73150245(-)$1	323	46	50	12.0000
GAGG	chr2:20549900-20550249(-)$1	349	62	66	12.0000
GAGG	chr3:171527435-171527775(-)$1	340	138	142	12.0000
GAGG	chr16:4400799-4401058(-)$1	259	39	43	12.0000
GAGG	chr17:39942654-39942892(-)$1	238	90	94	12.0000
GAGG	chr2:242255461-242255706(+)$1	245	70	74	12.0000
GAGG	chr1:1203111-1203335(-)$1	224	7	11	12.0000
GAGG	chr7:1577660-1577901(+)$1	241	151	155	12.0000
GAGG	chr19:2425717-2425962(-)$1	245	0	4	12.0000
GAGG	chr17:79878022-79878254(-)$1	232	52	56	12.0000
GAGG	chr1:36787827-36788081(+)$1	254	242	246	12.0000
GAGG	chr12:122213908-122214185(+)$1	277	223	227	12.0000
GAGG	chr6:31619935-31620210(-)$1	275	231	235	12.0000
GAGG	chr12:132196264-132196535(+)$1	271	147	151	12.0000
GAGG	chr1:36788108-36788386(+)$1	278	153	157	12.0000
GAGG	chr17:17585638-17585915(+)$1	277	53	57	12.0000
GAGG	chr17:7476697-7476955(+)$1	258	36	40	12.0000
GAGG	chr4:1377771-1378031(+)$1	260	4	8	12.0000
GAGG	chr16:4661259-4661492(-)$1	233	47	51	12.0000
GAGG	chr19:41869794-41870103(+)$1	309	91	95	12.0000
GAGG	chr11:64073907-64074158(+)$1	251	28	32	12.0000
GAGG	chr19:41306823-41307075(+)$1	252	20	24	12.0000
GAGG	chr6:53213184-53213495(-)$1	311	130	134	12.0000
GAGG	chr1:1498139-1498392(-)$1	253	190	194	12.0000
GAGG	chr4:763273-763492(-)$1	219	54	58	12.0000
GAGG	chr4:2471457-2471789(+)$1	332	11	15	12.0000
GAGG	chr18:3451767-3452012(+)$1	245	40	44	12.0000
GAGG	chr12:125398519-125398769(-)$1	250	221	225	12.0000
GAGG	chr11:64074038-64074324(+)$1	286	204	208	12.0000
gagg	chr12:133337258-133337530(-)$1	272	71	75	12.0000
gagg	chr9:130331103-130331354(-)$1	251	16	20	12.0000
GAGG	chr22:20105342-20105585(+)$1	243	13	17	12.0000
GAGG	chr6:74229938-74230152(-)$1	214	39	43	12.0000
GAGG	chr16:586011-586236(+)$1	225	104	108	12.0000
GAGG	chr10:3110729-3111060(+)$1	331	43	47	12.0000
GAGG	chr7:100171543-100171849(-)$1	306	66	70	12.0000
GAGG	chr19:4066689-4066987(-)$1	298	4	8	12.0000
GAGG	chr7:157130183-157130460(+)$1	277	17	21	12.0000
GAGG	chr10:43892688-43892978(-)$1	290	279	283	12.0000
GAGG	chr11:66406179-66406450(+)$1	271	14	18	12.0000
GAGG	chr11:34074356-34074679(+)$1	323	19	23	12.0000
GAGG	chr12:31477505-31477784(-)$1	279	47	51	12.0000
GAGG	chr7:140178475-140178764(-)$1	289	27	31	12.0000
GAGG	chr1:38396948-38397241(-)$1	293	31	35	12.0000
GAGG	chr12:123464886-123465170(+)$1	284	53	57	12.0000
GAGG	chr11:66393977-66394232(+)$1	255	189	193	12.0000
GAGG	chr5:137088282-137088523(-)$1	241	12	16	12.0000
GAGG	chr11:34074509-34074801(+)$1	292	24	28	12.0000
GAGG	chr16:1429420-1429683(-)$1	263	210	214	12.0000
gagg	chr19:40788105-40788349(-)$1	244	172	176	12.0000
GAGG	chr1:1498015-1498268(-)$1	253	66	70	12.0000
GAGG	chr1:1509908-1510156(-)$1	248	65	69	12.0000
GAGG	chr20:32251547-32251822(-)$1	275	163	167	12.0000
GAGG	chr16:2579515-2579770(+)$1	255	65	69	12.0000
GAGG	chr11:62476937-62477241(-)$1	304	53	57	12.0000
GAGG	chr11:32914658-32914904(+)$1	246	227	231	12.0000
GAGG	chr1:2122096-2122399(-)$1	303	4	8	12.0000
GAGG	chr17:62501910-62502186(-)$1	276	39	43	12.0000
GAGG	chr18:3451695-3451943(+)$1	248	112	116	12.0000
GAGG	chr4:56411887-56412143(-)$1	256	73	77	12.0000
GAGG	chr8:144678287-144678556(-)$1	269	26	30	12.0000
GAGG	chr11:64073577-64073836(+)$1	259	123	127	12.0000
GAGG	chr5:131132526-131132785(-)$1	259	83	87	12.0000
GAGG	chr17:76116525-76116791(-)$1	266	55	59	12.0000
GAGG	chr2:24714922-24715229(+)$1	307	132	136	12.0000
GAGG	chr20:32256152-32256379(-)$1	227	21	25	12.0000
GAGG	chr7:917584-917861(+)$1	277	96	100	12.0000
GAGG	chr7:924784-925067(+)$1	283	124	128	12.0000
GAGG	chr3:128209080-128209344(+)$1	264	42	46	12.0000
GAGG	chr19:974874-975096(+)$1	222	12	16	12.0000
GAGG	chr11:61583844-61584096(-)$1	252	98	102	12.0000
GAGG	chr17:73149747-73149996(-)$1	249	183	187	12.0000
GAGG	chr10:102759122-102759365(+)$1	243	58	62	12.0000
GAGG	chr2:153574668-153574973(+)$1	305	58	62	12.0000
GAGG	chr16:88942207-88942465(-)$1	258	58	62	12.0000
GAGG	chr2:223726315-223726613(+)$1	298	0	4	12.0000
GAGG	chr22:50018401-50018662(-)$1	261	114	118	12.0000
GAGG	chr3:196044972-196045253(-)$1	281	10	14	12.0000

#otherMatches

#Struct PSSM
GGGG	chr13:28024086-28024488(-)$1	402	4	8	12.0000
""bb	chr1:15250644-15250898(+)$1	254	97	101	12.0000
!!ff	chr9:139715621-139715894(+)$1	273	51	55	12.0000
oooo	chr19:2270264-2270515(+)$1	251	200	204	12.0000
GGGG	chr17:42255544-42255813(-)$1	269	16	20	12.0000
GGGG	chr19:2811949-2812266(+)$1	317	18	22	12.0000
eeee	chr12:96792916-96793159(-)$1	243	34	38	12.0000
Cccc	chr1:206858254-206858556(+)$1	302	100	104	12.0000
Dfff	chr12:125398435-125398719(-)$1	284	171	175	12.0000
"""b	chr12:96793066-96793328(-)$1	262	28	32	12.0000
ccab	chr4:763292-763532(-)$1	240	16	20	12.0000
llee	chr19:1395004-1395272(+)$1	268	81	85	12.0000
}CCC	chr1:2326313-2326585(+)$1	272	105	109	12.0000
mmmb	chr15:74725783-74726056(-)$1	273	50	54	12.0000
::FF	chr17:73149922-73150245(-)$1	323	46	50	12.0000
====	chr2:20549900-20550249(-)$1	349	62	66	12.0000
mmee	chr3:171527435-171527775(-)$1	340	138	142	12.0000
H:hh	chr16:4400799-4401058(-)$1	259	39	43	12.0000
66gg	chr17:39942654-39942892(-)$1	238	90	94	12.0000
fffd	chr2:242255461-242255706(+)$1	245	70	74	12.0000
A{BB	chr1:1203111-1203335(-)$1	224	7	11	12.0000
====	chr7:1577660-1577901(+)$1	241	151	155	12.0000
::::	chr19:2425717-2425962(-)$1	245	0	4	12.0000
FFFF	chr17:79878022-79878254(-)$1	232	52	56	12.0000
gggg	chr1:36787827-36788081(+)$1	254	242	246	12.0000
!!ee	chr12:122213908-122214185(+)$1	277	223	227	12.0000
d:bb	chr6:31619935-31620210(-)$1	275	231	235	12.0000
hhhh	chr12:132196264-132196535(+)$1	271	147	151	12.0000
dddd	chr1:36788108-36788386(+)$1	278	153	157	12.0000
d[dd	chr17:17585638-17585915(+)$1	277	53	57	12.0000
EMMM	chr17:7476697-7476955(+)$1	258	36	40	12.0000
KKHH	chr4:1377771-1378031(+)$1	260	4	8	12.0000
FFFI	chr16:4661259-4661492(-)$1	233	47	51	12.0000
2ddd	chr19:41869794-41870103(+)$1	309	91	95	12.0000
eeem	chr11:64073907-64074158(+)$1	251	28	32	12.0000
f###	chr19:41306823-41307075(+)$1	252	20	24	12.0000
mmmb	chr6:53213184-53213495(-)$1	311	130	134	12.0000
ggg2	chr1:1498139-1498392(-)$1	253	190	194	12.0000
[ddd	chr4:763273-763492(-)$1	219	54	58	12.0000
HHHH	chr4:2471457-2471789(+)$1	332	11	15	12.0000
22ff	chr18:3451767-3452012(+)$1	245	40	44	12.0000
pppp	chr12:125398519-125398769(-)$1	250	221	225	12.0000
g[cc	chr11:64074038-64074324(+)$1	286	204	208	12.0000
====	chr12:133337258-133337530(-)$1	272	71	75	12.0000
eeee	chr9:130331103-130331354(-)$1	251	16	20	12.0000
B{CC	chr22:20105342-20105585(+)$1	243	13	17	12.0000
ccc2	chr6:74229938-74230152(-)$1	214	39	43	12.0000
====	chr16:586011-586236(+)$1	225	104	108	12.0000
dddg	chr10:3110729-3111060(+)$1	331	43	47	12.0000
[ccc	chr7:100171543-100171849(-)$1	306	66	70	12.0000
[bbo	chr19:4066689-4066987(-)$1	298	4	8	12.0000
iiii	chr7:157130183-157130460(+)$1	277	17	21	12.0000
e]bb	chr10:43892688-43892978(-)$1	290	279	283	12.0000
C{BB	chr11:66406179-66406450(+)$1	271	14	18	12.0000
EEEE	chr11:34074356-34074679(+)$1	323	19	23	12.0000
EEEE	chr12:31477505-31477784(-)$1	279	47	51	12.0000
B{EE	chr7:140178475-140178764(-)$1	289	27	31	12.0000
eeee	chr1:38396948-38397241(-)$1	293	31	35	12.0000
::bb	chr12:123464886-123465170(+)$1	284	53	57	12.0000
CCCB	chr11:66393977-66394232(+)$1	255	189	193	12.0000
d[bb	chr5:137088282-137088523(-)$1	241	12	16	12.0000
b[ee	chr11:34074509-34074801(+)$1	292	24	28	12.0000
iiii	chr16:1429420-1429683(-)$1	263	210	214	12.0000
!!gg	chr19:40788105-40788349(-)$1	244	172	176	12.0000
b[ee	chr1:1498015-1498268(-)$1	253	66	70	12.0000
B{CC	chr1:1509908-1510156(-)$1	248	65	69	12.0000
HHHH	chr20:32251547-32251822(-)$1	275	163	167	12.0000
dddd	chr16:2579515-2579770(+)$1	255	65	69	12.0000
AA{F	chr11:62476937-62477241(-)$1	304	53	57	12.0000
DD}B	chr11:32914658-32914904(+)$1	246	227	231	12.0000
::CC	chr1:2122096-2122399(-)$1	303	4	8	12.0000
hhhh	chr17:62501910-62502186(-)$1	276	39	43	12.0000
ffff	chr18:3451695-3451943(+)$1	248	112	116	12.0000
b[cc	chr4:56411887-56412143(-)$1	256	73	77	12.0000
nnnn	chr8:144678287-144678556(-)$1	269	26	30	12.0000
nddd	chr11:64073577-64073836(+)$1	259	123	127	12.0000
c]ee	chr5:131132526-131132785(-)$1	259	83	87	12.0000
GGGG	chr17:76116525-76116791(-)$1	266	55	59	12.0000
]ddd	chr2:24714922-24715229(+)$1	307	132	136	12.0000
b[dd	chr20:32256152-32256379(-)$1	227	21	25	12.0000
eeee	chr7:917584-917861(+)$1	277	96	100	12.0000
eeee	chr7:924784-925067(+)$1	283	124	128	12.0000
IIII	chr3:128209080-128209344(+)$1	264	42	46	12.0000
KKGG	chr19:974874-975096(+)$1	222	12	16	12.0000
BBEE	chr11:61583844-61584096(-)$1	252	98	102	12.0000
ccEE	chr17:73149747-73149996(-)$1	249	183	187	12.0000
]ddd	chr10:102759122-102759365(+)$1	243	58	62	12.0000
EEEE	chr2:153574668-153574973(+)$1	305	58	62	12.0000
==ll	chr16:88942207-88942465(-)$1	258	58	62	12.0000
CCCL	chr2:223726315-223726613(+)$1	298	0	4	12.0000
}CCC	chr22:50018401-50018662(-)$1	261	114	118	12.0000
b[ff	chr3:196044972-196045253(-)$1	281	10	14	12.0000

#DB
((((	chr13:28024086-28024488(-)$1	1	4	8	12.0000
..((	chr1:15250644-15250898(+)$1	1	97	101	12.0000
..((	chr9:139715621-139715894(+)$1	1	51	55	12.0000
....	chr19:2270264-2270515(+)$1	1	200	204	12.0000
((((	chr17:42255544-42255813(-)$1	1	16	20	12.0000
((((	chr19:2811949-2812266(+)$1	1	18	22	12.0000
((((	chr12:96792916-96793159(-)$1	1	34	38	12.0000
((((	chr1:206858254-206858556(+)$1	1	100	104	12.0000
((((	chr12:125398435-125398719(-)$1	1	171	175	12.0000
...(	chr12:96793066-96793328(-)$1	1	28	32	12.0000
((((	chr4:763292-763532(-)$1	1	16	20	12.0000
..))	chr19:1395004-1395272(+)$1	1	81	85	12.0000
.)))	chr1:2326313-2326585(+)$1	1	105	109	12.0000
...)	chr15:74725783-74726056(-)$1	1	50	54	12.0000
..((	chr17:73149922-73150245(-)$1	1	46	50	12.0000
((((	chr2:20549900-20550249(-)$1	1	62	66	12.0000
..))	chr3:171527435-171527775(-)$1	1	138	142	12.0000
(.((	chr16:4400799-4401058(-)$1	1	39	43	12.0000
..))	chr17:39942654-39942892(-)$1	1	90	94	12.0000
((((	chr2:242255461-242255706(+)$1	1	70	74	12.0000
(.((	chr1:1203111-1203335(-)$1	1	7	11	12.0000
((((	chr7:1577660-1577901(+)$1	1	151	155	12.0000
....	chr19:2425717-2425962(-)$1	1	0	4	12.0000
((((	chr17:79878022-79878254(-)$1	1	52	56	12.0000
))))	chr1:36787827-36788081(+)$1	1	242	246	12.0000
..((	chr12:122213908-122214185(+)$1	1	223	227	12.0000
).((	chr6:31619935-31620210(-)$1	1	231	235	12.0000
((((	chr12:132196264-132196535(+)$1	1	147	151	12.0000
))))	chr1:36788108-36788386(+)$1	1	153	157	12.0000
(.((	chr17:17585638-17585915(+)$1	1	53	57	12.0000
(...	chr17:7476697-7476955(+)$1	1	36	40	12.0000
..((	chr4:1377771-1378031(+)$1	1	4	8	12.0000
((((	chr16:4661259-4661492(-)$1	1	47	51	12.0000
.)))	chr19:41869794-41870103(+)$1	1	91	95	12.0000
(((.	chr11:64073907-64074158(+)$1	1	28	32	12.0000
(...	chr19:41306823-41307075(+)$1	1	20	24	12.0000
...)	chr6:53213184-53213495(-)$1	1	130	134	12.0000
))).	chr1:1498139-1498392(-)$1	1	190	194	12.0000
.(((	chr4:763273-763492(-)$1	1	54	58	12.0000
((((	chr4:2471457-2471789(+)$1	1	11	15	12.0000
..))	chr18:3451767-3452012(+)$1	1	40	44	12.0000
....	chr12:125398519-125398769(-)$1	1	221	225	12.0000
(.((	chr11:64074038-64074324(+)$1	1	204	208	12.0000
))))	chr12:133337258-133337530(-)$1	1	71	75	12.0000
((((	chr9:130331103-130331354(-)$1	1	16	20	12.0000
(.((	chr22:20105342-20105585(+)$1	1	13	17	12.0000
))).	chr6:74229938-74230152(-)$1	1	39	43	12.0000
))))	chr16:586011-586236(+)$1	1	104	108	12.0000
)))(	chr10:3110729-3111060(+)$1	1	43	47	12.0000
.(((	chr7:100171543-100171849(-)$1	1	66	70	12.0000
.((.	chr19:4066689-4066987(-)$1	1	4	8	12.0000
((((	chr7:157130183-157130460(+)$1	1	17	21	12.0000
).))	chr10:43892688-43892978(-)$1	1	279	283	12.0000
(.((	chr11:66406179-66406450(+)$1	1	14	18	12.0000
((((	chr11:34074356-34074679(+)$1	1	19	23	12.0000
))))	chr12:31477505-31477784(-)$1	1	47	51	12.0000
(.((	chr7:140178475-140178764(-)$1	1	27	31	12.0000
((((	chr1:38396948-38397241(-)$1	1	31	35	12.0000
..((	chr12:123464886-123465170(+)$1	1	53	57	12.0000
))))	chr11:66393977-66394232(+)$1	1	189	193	12.0000
(.((	chr5:137088282-137088523(-)$1	1	12	16	12.0000
(.((	chr11:34074509-34074801(+)$1	1	24	28	12.0000
))))	chr16:1429420-1429683(-)$1	1	210	214	12.0000
..((	chr19:40788105-40788349(-)$1	1	172	176	12.0000
(.((	chr1:1498015-1498268(-)$1	1	66	70	12.0000
(.((	chr1:1509908-1510156(-)$1	1	65	69	12.0000
))))	chr20:32251547-32251822(-)$1	1	163	167	12.0000
))))	chr16:2579515-2579770(+)$1	1	65	69	12.0000
((.(	chr11:62476937-62477241(-)$1	1	53	57	12.0000
)).)	chr11:32914658-32914904(+)$1	1	227	231	12.0000
..((	chr1:2122096-2122399(-)$1	1	4	8	12.0000
((((	chr17:62501910-62502186(-)$1	1	39	43	12.0000
))))	chr18:3451695-3451943(+)$1	1	112	116	12.0000
(.((	chr4:56411887-56412143(-)$1	1	73	77	12.0000
....	chr8:144678287-144678556(-)$1	1	26	30	12.0000
.)))	chr11:64073577-64073836(+)$1	1	123	127	12.0000
).))	chr5:131132526-131132785(-)$1	1	83	87	12.0000
((((	chr17:76116525-76116791(-)$1	1	55	59	12.0000
.)))	chr2:24714922-24715229(+)$1	1	132	136	12.0000
(.((	chr20:32256152-32256379(-)$1	1	21	25	12.0000
))))	chr7:917584-917861(+)$1	1	96	100	12.0000
((((	chr7:924784-925067(+)$1	1	124	128	12.0000
((((	chr3:128209080-128209344(+)$1	1	42	46	12.0000
..((	chr19:974874-975096(+)$1	1	12	16	12.0000
((((	chr11:61583844-61584096(-)$1	1	98	102	12.0000
))))	chr17:73149747-73149996(-)$1	1	183	187	12.0000
.)))	chr10:102759122-102759365(+)$1	1	58	62	12.0000
((((	chr2:153574668-153574973(+)$1	1	58	62	12.0000
((..	chr16:88942207-88942465(-)$1	1	58	62	12.0000
(((.	chr2:223726315-223726613(+)$1	1	0	4	12.0000
.)))	chr22:50018401-50018662(-)$1	1	114	118	12.0000
(.((	chr3:196044972-196045253(-)$1	1	10	14	12.0000

#PSSM
G : 0.94	g : 0.05	
A : 0.94	a : 0.05	
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	

#score	1104.0000000000005
#seq	92
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_UTR_m2_run1.nuc.txt

#NT
UCGGCCUUGGGGG	chr19:2270097-2270395(+)$1	298	137	150	14.6521
GGGGGCUUGGGUG	chr8:145650750-145651027(-)$1	277	0	13	17.4782
cggggcccgcggg	chr9:126692129-126692438(-)$1	309	219	232	19.9782
CGGGGGCUCGGGG	chr12:109124822-109125061(-)$1	239	56	69	17.4782
AGAGGCCUGGGGG	chr22:20105341-20105596(+)$1	255	55	68	20.5217
cggggccgggggc	chr8:30669838-30670090(-)$1	252	75	88	19.4347
UGGGGUCUGGAGG	chr19:18547577-18547844(-)$1	267	102	115	16.7173
UGGGGCCCGGGGU	chr7:5569495-5569749(-)$1	254	48	61	18.3478
CCGGGACUGGGGG	chr15:64752848-64753083(+)$1	235	213	226	18.6739
AGGGGCCUGGGGG	chr19:18547997-18548296(-)$1	299	223	236	24.1086
caggggcugaggg	chr6:86352565-86352819(-)$1	254	36	49	14.9782
GGGCGCCUGGAGG	chr20:35491744-35491989(-)$1	245	25	38	16.3913
UGGGAGCUGGGGG	chr4:174255111-174255413(-)$1	302	249	262	17.3695
CGGGGCUUGGCGG	chr7:77166711-77166970(+)$1	259	25	38	17.9130
ggcggcccgcggg	chr5:154136577-154136852(+)$1	275	0	13	16.0652
cggggccgggggc	chr8:30669986-30670267(-)$1	281	252	265	19.4347
cggggccUGGAGU	chr3:128211717-128211962(+)$1	245	59	72	17.4782
AAGGGCUUGGGGG	chr1:27022552-27022811(+)$1	259	41	54	17.0434
GGGGUCCUGGGCG	chr17:76116599-76116830(-)$1	231	102	115	17.1521
gcgggccgggcgg	chr7:151216103-151216386(-)$1	283	54	67	15.9565
cggggccuggggc	chr11:3013145-3013465(-)$1	320	160	173	21.6086
UGCGGCCUGGCGG	chr5:179248031-179248276(+)$1	245	77	90	17.0434
ggcggccggaggg	chr22:19418918-19419254(-)$1	336	144	157	15.8478
CCUGGCCAGGGGG	chr7:150779628-150779857(-)$1	229	131	144	15.5217
UGGGGCCGGGGCG	chr12:109124501-109124760(-)$1	259	63	76	18.5652
AGAGGCCUGGGGG	chr22:20105396-20105645(+)$1	249	0	13	20.5217
GGGUGCCGGCGGG	chr2:242255462-242255711(+)$1	249	45	58	15.1956
ccggggcuggggg	chr22:20067992-20068268(+)$1	276	97	110	19.1086
gcgggccggcggg	chr21:46494356-46494613(+)$1	257	90	103	16.9347
AGGGGCCUGGGGG	chr19:18547932-18548197(-)$1	265	124	137	24.1086
GGGGAGCUGGGGG	chr19:2270333-2270600(+)$1	267	179	192	17.8043
uggggccugggcg	chr19:34287171-34287445(+)$1	274	35	48	20.7391
CGGGCCCUGUGGG	chr19:10829098-10829349(+)$1	251	120	133	18.1304
CUGGGCCUGGGGG	chr6:34360101-34360373(-)$1	272	54	67	21.7173
UCGGCCUUGGGGG	chr19:2270202-2270434(+)$1	232	32	45	14.6521
gcgggcccgcggg	chr1:245026158-245026465(-)$1	307	92	105	16.7173
UGGGGCUUGGGGU	chr19:49605893-49606148(+)$1	255	93	106	17.2608
cgggggUUGGGGG	chr1:153918927-153919200(-)$1	273	79	92	18.5652
CGAGGCCUGAGGG	chr5:138629681-138629966(+)$1	285	220	233	18.3478
ggcggcccggggg	chr14:100704552-100704804(-)$1	252	89	102	19.1086
CGGGGCCUCGGAG	chr1:150947039-150947330(-)$1	291	160	173	16.9347
gggggccggggag	chr2:54197784-54198040(-)$1	256	66	79	18.9999
GGAGGCCCGGGAG	chr19:1407621-1407886(+)$1	265	112	125	15.1956
UGGGGACGGCGGG	chr1:26232172-26232446(-)$1	274	112	125	15.6304
GGGGCCCUGGGGC	chr17:46653875-46654119(-)$1	244	114	127	17.6956

#otherMatches

#Struct PSSM
KDDDDLLLDDDDK	chr19:1652281-1652538(-)$1	257	61	74	16.3913
gggggggmmmmgg	chr19:2270097-2270395(+)$1	298	137	150	14.6521
:eeeeeooooooe	chr8:145650750-145651027(-)$1	277	0	13	17.4782
cccbbccc[ffff	chr9:126692129-126692438(-)$1	309	219	232	19.9782
ma]bb]ccc]bb>	chr12:109124822-109125061(-)$1	239	56	69	17.4782
==:::JJJJJJJJ	chr22:20105341-20105596(+)$1	255	55	68	20.5217
c333dddd22a]e	chr8:30669838-30670090(-)$1	252	75	88	19.4347
'''ggggggg[gg	chr19:18547577-18547844(-)$1	267	102	115	16.7173
{BB{HHHHHHHH{	chr7:5569495-5569749(-)$1	254	48	61	18.3478
eeee22ggggggg	chr15:64752848-64753083(+)$1	235	213	226	18.6739
oggggggg333dd	chr19:18547997-18548296(-)$1	299	223	236	24.1086
CLLLHHHHHHHH:	chr6:86352565-86352819(-)$1	254	36	49	14.9782
oooobbdddd22e	chr20:35491744-35491989(-)$1	245	25	38	16.3913
ZEEEEE}EEEEEd	chr4:174255111-174255413(-)$1	302	249	262	17.3695
e:GGGGGGG{AFF	chr7:77166711-77166970(+)$1	259	25	38	17.9130
BB{BBA{FFFFFF	chr5:154136577-154136852(+)$1	275	0	13	16.0652
b22dddd333ccc	chr8:30669986-30670267(-)$1	281	252	265	19.4347
dddd[dddddddd	chr3:128211717-128211962(+)$1	245	59	72	17.4782
mmmmdddd333hh	chr1:27022552-27022811(+)$1	259	41	54	17.0434
JJJJJJJJJJKKB	chr17:76116599-76116830(-)$1	231	102	115	17.1521
==[eeeee[bboo	chr7:151216103-151216386(-)$1	283	54	67	15.9565
b]a]eeeeeiiii	chr11:3013145-3013465(-)$1	320	160	173	21.6086
========22hhh	chr5:179248031-179248276(+)$1	245	77	90	17.0434
c[bb[cccnnnnn	chr22:19418918-19419254(-)$1	336	144	157	15.8478
eeeeeccc]dddd	chr7:150779628-150779857(-)$1	229	131	144	15.5217
=======[bbnnn	chr12:109124501-109124760(-)$1	259	63	76	18.5652
GGGGGGGIIIIII	chr22:20105396-20105645(+)$1	249	0	13	20.5217
ddd[ccc[dddd"	chr2:242255462-242255711(+)$1	249	45	58	15.1956
"""eeeee[dddd	chr22:20067992-20068268(+)$1	276	97	110	19.1086
ccc]eeeee]iii	chr21:46494356-46494613(+)$1	257	90	103	16.9347
eebb####fffff	chr19:18547932-18548197(-)$1	265	124	137	24.1086
hhhhhhhgggggg	chr19:2270333-2270600(+)$1	267	179	192	17.8043
dd[dddd[dddd[	chr19:34287171-34287445(+)$1	274	35	48	20.7391
a]hhhhhhhh:bb	chr19:10829098-10829349(+)$1	251	120	133	18.1304
JJJJJJJJJJJBB	chr6:34360101-34360373(-)$1	272	54	67	21.7173
HH{AAA{BBHHHH	chr19:2270202-2270434(+)$1	232	32	45	14.6521
dd"""ccc[ammm	chr1:245026158-245026465(-)$1	307	92	105	16.7173
bb]a22ffffff]	chr19:49605893-49606148(+)$1	255	93	106	17.2608
eeee]dddd:EEE	chr1:153918927-153919200(-)$1	273	79	92	18.5652
cccc[ccc[bb!!	chr5:138629681-138629966(+)$1	285	220	233	18.3478
gggggg"""hhhh	chr14:100704552-100704804(-)$1	252	89	102	19.1086
e4444dddd333b	chr1:150947039-150947330(-)$1	291	160	173	16.9347
cc]dddd]a::::	chr2:54197784-54198040(-)$1	256	66	79	18.9999
KFFFFFF{BBKKC	chr19:1407621-1407886(+)$1	265	112	125	15.1956
::bb!!a[dddd!	chr1:26232172-26232446(-)$1	274	112	125	15.6304
2eeeeeggggggg	chr17:46653875-46654119(-)$1	244	114	127	17.6956

#DB
.((((...((((.	chr19:1652281-1652538(-)$1	1	61	74	16.3913
(((((((....))	chr19:2270097-2270395(+)$1	1	137	150	14.6521
.(((((......)	chr8:145650750-145651027(-)$1	1	0	13	17.4782
)))(((((.((((	chr9:126692129-126692438(-)$1	1	219	232	19.9782
.).)).))).)).	chr12:109124822-109125061(-)$1	1	56	69	17.4782
))...((((((((	chr22:20105341-20105596(+)$1	1	55	68	20.5217
)...))))..).)	chr8:30669838-30670090(-)$1	1	75	88	19.4347
...(((((((.((	chr19:18547577-18547844(-)$1	1	102	115	16.7173
.((.((((((((.	chr7:5569495-5569749(-)$1	1	48	61	18.3478
))))..)))))))	chr15:64752848-64753083(+)$1	1	213	226	18.6739
.)))))))...))	chr19:18547997-18548296(-)$1	1	223	236	24.1086
(...((((((((.	chr6:86352565-86352819(-)$1	1	36	49	14.9782
....))))))..)	chr20:35491744-35491989(-)$1	1	25	38	16.3913
.))))).)))))(	chr4:174255111-174255413(-)$1	1	249	262	17.3695
).(((((((.(((	chr7:77166711-77166970(+)$1	1	25	38	17.9130
((.(((.((((((	chr5:154136577-154136852(+)$1	1	0	13	16.0652
)..))))...)))	chr8:30669986-30670267(-)$1	1	252	265	19.4347
((((.((((((((	chr3:128211717-128211962(+)$1	1	59	72	17.4782
....))))...))	chr1:27022552-27022811(+)$1	1	41	54	17.0434
((((((((((..(	chr17:76116599-76116830(-)$1	1	102	115	17.1521
((.(((((.((..	chr7:151216103-151216386(-)$1	1	54	67	15.9565
).).)))))((((	chr11:3013145-3013465(-)$1	1	160	173	21.6086
))))))))..)))	chr5:179248031-179248276(+)$1	1	77	90	17.0434
(.((.(((.....	chr22:19418918-19419254(-)$1	1	144	157	15.8478
)))))))).))))	chr7:150779628-150779857(-)$1	1	131	144	15.5217
(((((((.((...	chr12:109124501-109124760(-)$1	1	63	76	18.5652
(((((((((((((	chr22:20105396-20105645(+)$1	1	0	13	20.5217
(((.(((.((((.	chr2:242255462-242255711(+)$1	1	45	58	15.1956
...(((((.((((	chr22:20067992-20068268(+)$1	1	97	110	19.1086
))).))))).)))	chr21:46494356-46494613(+)$1	1	90	103	16.9347
((((....(((((	chr19:18547932-18548197(-)$1	1	124	137	24.1086
(((((((((((((	chr19:2270333-2270600(+)$1	1	179	192	17.8043
((.((((.((((.	chr19:34287171-34287445(+)$1	1	35	48	20.7391
).)))))))).((	chr19:10829098-10829349(+)$1	1	120	133	18.1304
(((((((((((((	chr6:34360101-34360373(-)$1	1	54	67	21.7173
((.(((.((((((	chr19:2270202-2270434(+)$1	1	32	45	14.6521
((...(((.(...	chr1:245026158-245026465(-)$1	1	92	105	16.7173
)).)..)))))).	chr19:49605893-49606148(+)$1	1	93	106	17.2608
)))).)))).(((	chr1:153918927-153919200(-)$1	1	79	92	18.5652
)(((.(((.((..	chr5:138629681-138629966(+)$1	1	220	233	18.3478
((((((...((((	chr14:100704552-100704804(-)$1	1	89	102	19.1086
)....))))...)	chr1:150947039-150947330(-)$1	1	160	173	16.9347
)).)))).)....	chr2:54197784-54198040(-)$1	1	66	79	18.9999
.((((((.((..(	chr19:1407621-1407886(+)$1	1	112	125	15.1956
..((..(.((((.	chr1:26232172-26232446(-)$1	1	112	125	15.6304
.)))))(((((((	chr17:46653875-46654119(-)$1	1	114	127	17.6956

#PSSM
c : 0.19	U : 0.19	C : 0.17	G : 0.15	g : 0.15	A : 0.10	u : 0.02	
G : 0.49	g : 0.26	C : 0.08	c : 0.08	a : 0.02	A : 0.02	U : 0.02	
G : 0.49	g : 0.30	A : 0.08	c : 0.06	C : 0.02	U : 0.02	
G : 0.58	g : 0.36	C : 0.02	U : 0.02	
G : 0.47	g : 0.34	C : 0.08	A : 0.04	c : 0.02	U : 0.02	
C : 0.49	c : 0.30	G : 0.06	g : 0.06	A : 0.04	U : 0.02	
C : 0.49	c : 0.34	U : 0.15	
U : 0.54	g : 0.13	c : 0.10	u : 0.08	G : 0.06	C : 0.04	A : 0.02	
G : 0.63	g : 0.32	C : 0.04	
G : 0.58	g : 0.17	c : 0.10	a : 0.04	C : 0.04	U : 0.02	A : 0.02	
G : 0.56	g : 0.30	A : 0.06	C : 0.04	c : 0.02	
G : 0.56	g : 0.28	C : 0.04	A : 0.04	U : 0.02	c : 0.02	a : 0.02	
G : 0.58	g : 0.26	c : 0.06	U : 0.06	C : 0.02	

#score	825.5217391304344
#seq	46
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_CDS_m3_run2.nuc.txt

#NT
GAG	chr3:195796219-195796492(-)$1	273	3	6	8.9999
GAG	chr19:17449341-17449648(+)$1	307	32	35	8.9999
GAG	chr5:179044718-179045027(-)$1	309	35	38	8.9999
GAG	chr1:31422943-31423182(-)$1	239	117	120	8.9999
GAG	chr15:91527823-91528077(-)$1	254	23	26	8.9999
GAG	chr4:994324-994612(+)$1	288	96	99	8.9999
GAG	chr11:57562986-57563294(+)$1	308	104	107	8.9999
GAG	chr15:63908629-63908887(-)$1	258	163	166	8.9999
GAG	chr21:38852977-38853232(+)$1	255	5	8	8.9999
GAG	chr19:58696969-58697340(+)$1	371	154	157	8.9999
gag	chr6:43738508-43738788(+)$1	280	18	21	8.9999
GAG	chr19:55649303-55649543(-)$1	240	68	71	8.9999
GAG	chr12:56716789-56717093(-)$1	304	15	18	8.9999
GAG	chr1:90470462-90470710(+)$1	248	53	56	8.9999
GAG	chr7:152006997-152007261(-)$1	264	11	14	8.9999
GAG	chr7:139044911-139045181(+)$1	270	188	191	8.9999
GAG	chr4:1741582-1741805(+)$1	223	68	71	8.9999
GAG	chr19:7711064-7711338(+)$1	274	235	238	8.9999
GAG	chr16:67273160-67273454(-)$1	294	26	29	8.9999
GAG	chr11:6625393-6625719(+)$1	326	15	18	8.9999
GAG	chr12:133313406-133313746(-)$1	340	52	55	8.9999
GAG	chr7:128394213-128394496(+)$1	283	51	54	8.9999
GAG	chr2:74684391-74684693(+)$1	302	70	73	8.9999
GAG	chr11:291920-292191(+)$1	271	7	10	8.9999
GAG	chr5:53606096-53606387(-)$1	291	1	4	8.9999
GAG	chr19:8528272-8528490(+)$1	218	147	150	8.9999
GAG	chr7:72418844-72419119(-)$1	275	40	43	8.9999
GAG	chr8:117862759-117863024(-)$1	265	30	33	8.9999
GAG	chr20:42086974-42087241(+)$1	267	177	180	8.9999
GAG	chr16:89971296-89971551(+)$1	255	14	17	8.9999
GAG	chr4:80898653-80898932(-)$1	279	29	32	8.9999
GAG	chr6:31857206-31857459(-)$1	253	38	41	8.9999
GAG	chr6:168352623-168352943(+)$1	320	39	42	8.9999
GAG	chr12:104332043-104332298(+)$1	255	43	46	8.9999
GAG	chr7:150820777-150821054(+)$1	277	16	19	8.9999
GAG	chr12:133373018-133373374(-)$1	356	15	18	8.9999
GAG	chr5:137894145-137894383(-)$1	238	17	20	8.9999
GAG	chr5:225977-226271(+)$1	294	91	94	8.9999
GAG	chrX:70757734-70758026(+)$1	292	30	33	8.9999
GAG	chr17:80151713-80152019(-)$1	306	150	153	8.9999
GAG	chr13:33101417-33101710(-)$1	293	163	166	8.9999
GAG	chr4:59221-59436(+)$1	215	146	149	8.9999
GAG	chr7:99096273-99096531(-)$1	258	8	11	8.9999
GAG	chr17:26910860-26911103(-)$1	243	4	7	8.9999
GAG	chr17:26912452-26912708(-)$1	256	40	43	8.9999
GAG	chr11:65630979-65631241(+)$1	262	0	3	8.9999
GAG	chr7:129098455-129098721(+)$1	266	110	113	8.9999
GAG	chr3:47036714-47036995(+)$1	281	8	11	8.9999
GAG	chr4:16227866-16228186(-)$1	320	22	25	8.9999
GAG	chr4:83349070-83349286(-)$1	216	61	64	8.9999
GAG	chr4:174254034-174254245(-)$1	211	205	208	8.9999
GAG	chrX:64737798-64738078(-)$1	280	1	4	8.9999
GAG	chr6:88411220-88411485(-)$1	265	55	58	8.9999
GAG	chr8:144877110-144877347(-)$1	237	26	29	8.9999
GAG	chr7:128455695-128456042(+)$1	347	7	10	8.9999
GAG	chr5:176981152-176981445(-)$1	293	0	3	8.9999
GAG	chr2:132044607-132044885(+)$1	278	4	7	8.9999
GAG	chr10:75866901-75867148(+)$1	247	67	70	8.9999
GAG	chr6:122792741-122793030(-)$1	289	23	26	8.9999
GAG	chr19:7707549-7707811(+)$1	262	34	37	8.9999
gag	chr18:694133-694413(-)$1	280	13	16	8.9999
GAG	chr14:100819958-100820233(-)$1	275	79	82	8.9999
GAG	chr16:89592720-89592976(+)$1	256	67	70	8.9999
GAG	chr12:133360594-133360983(-)$1	389	35	38	8.9999
GAG	chr9:133470821-133471096(+)$1	275	2	5	8.9999
GAG	chr3:142747259-142747536(+)$1	277	25	28	8.9999
GAG	chr2:233697465-233697724(+)$1	259	37	40	8.9999
GAG	chr17:79167667-79167941(-)$1	274	109	112	8.9999
GAG	chr2:102486031-102486349(+)$1	318	73	76	8.9999
GAG	chr5:145524132-145524370(-)$1	238	40	43	8.9999
GAG	chr19:10405173-10405418(+)$1	245	8	11	8.9999
GAG	chr19:16940517-16940776(+)$1	259	255	258	8.9999
GAG	chr1:45232397-45232648(+)$1	251	118	121	8.9999
GAG	chr11:61919197-61919457(+)$1	260	249	252	8.9999
gag	chr17:47021173-47021434(-)$1	261	33	36	8.9999
GAG	chr12:122615326-122615596(+)$1	270	25	28	8.9999
GAG	chr15:93528745-93529009(+)$1	264	12	15	8.9999
GAG	chr11:65631198-65631455(+)$1	257	87	90	8.9999
GAG	chr19:49669215-49669568(+)$1	353	8	11	8.9999
GAG	chrX:48935321-48935639(-)$1	318	89	92	8.9999
GAG	chr11:67810940-67811217(+)$1	277	26	29	8.9999
GAG	chr18:21047302-21047590(+)$1	288	123	126	8.9999
GAG	chr11:596833-597110(+)$1	277	1	4	8.9999
GAG	chr3:52561917-52562190(-)$1	273	111	114	8.9999
GAG	chr6:99860334-99860602(-)$1	268	32	35	8.9999
GAG	chr7:142651272-142651556(-)$1	284	39	42	8.9999
GAG	chr10:121336023-121336355(-)$1	332	190	193	8.9999
GAG	chr18:55268845-55269109(-)$1	264	93	96	8.9999
GAG	chr11:290463-290677(+)$1	214	16	19	8.9999
GAG	chr7:100284823-100285072(-)$1	249	137	140	8.9999
GAG	chr8:37756497-37756770(-)$1	273	12	15	8.9999
GAG	chr22:50876560-50876816(+)$1	256	60	63	8.9999
GAG	chrX:106359812-106360082(-)$1	270	35	38	8.9999
gag	chr8:145652189-145652444(-)$1	255	26	29	8.9999
GAG	chr7:139083239-139083513(+)$1	274	104	107	8.9999

#otherMatches

#Struct PSSM
fmm	chr17:4575484-4575729(-)$1	245	49	52	8.9999
::D	chr3:195796219-195796492(-)$1	273	3	6	8.9999
eee	chr19:17449341-17449648(+)$1	307	32	35	8.9999
ddd	chr5:179044718-179045027(-)$1	309	35	38	8.9999
uuu	chr1:31422943-31423182(-)$1	239	117	120	8.9999
bb[	chr15:91527823-91528077(-)$1	254	23	26	8.9999
eee	chr4:994324-994612(+)$1	288	96	99	8.9999
777	chr11:57562986-57563294(+)$1	308	104	107	8.9999
eee	chr15:63908629-63908887(-)$1	258	163	166	8.9999
ggg	chr21:38852977-38853232(+)$1	255	5	8	8.9999
:::	chr19:58696969-58697340(+)$1	371	154	157	8.9999
ggg	chr6:43738508-43738788(+)$1	280	18	21	8.9999
ggg	chr19:55649303-55649543(-)$1	240	68	71	8.9999
bbm	chr12:56716789-56717093(-)$1	304	15	18	8.9999
EEE	chr1:90470462-90470710(+)$1	248	53	56	8.9999
HHH	chr7:152006997-152007261(-)$1	264	11	14	8.9999
YYA	chr7:139044911-139045181(+)$1	270	188	191	8.9999
##c	chr4:1741582-1741805(+)$1	223	68	71	8.9999
fff	chr19:7711064-7711338(+)$1	274	235	238	8.9999
ggg	chr16:67273160-67273454(-)$1	294	26	29	8.9999
EDD	chr11:6625393-6625719(+)$1	326	15	18	8.9999
===	chr12:133313406-133313746(-)$1	340	52	55	8.9999
G:e	chr7:128394213-128394496(+)$1	283	51	54	8.9999
::g	chr2:74684391-74684693(+)$1	302	70	73	8.9999
EEE	chr11:291920-292191(+)$1	271	7	10	8.9999
ddd	chr5:53606096-53606387(-)$1	291	1	4	8.9999
i]b	chr19:8528272-8528490(+)$1	218	147	150	8.9999
BBO	chr7:72418844-72419119(-)$1	275	40	43	8.9999
::d	chr8:117862759-117863024(-)$1	265	30	33	8.9999
ccc	chr20:42086974-42087241(+)$1	267	177	180	8.9999
:ii	chr16:89971296-89971551(+)$1	255	14	17	8.9999
qqq	chr4:80898653-80898932(-)$1	279	29	32	8.9999
[a[	chr6:31857206-31857459(-)$1	253	38	41	8.9999
nnn	chr6:168352623-168352943(+)$1	320	39	42	8.9999
oog	chr12:104332043-104332298(+)$1	255	43	46	8.9999
III	chr7:150820777-150821054(+)$1	277	16	19	8.9999
:::	chr12:133373018-133373374(-)$1	356	15	18	8.9999
e[f	chr5:137894145-137894383(-)$1	238	17	20	8.9999
HHH	chr5:225977-226271(+)$1	294	91	94	8.9999
b[a	chrX:70757734-70758026(+)$1	292	30	33	8.9999
ddd	chr17:80151713-80152019(-)$1	306	150	153	8.9999
qqe	chr13:33101417-33101710(-)$1	293	163	166	8.9999
BB}	chr4:59221-59436(+)$1	215	146	149	8.9999
ccc	chr7:99096273-99096531(-)$1	258	8	11	8.9999
DDD	chr17:26910860-26911103(-)$1	243	4	7	8.9999
[cc	chr17:26912452-26912708(-)$1	256	40	43	8.9999
::i	chr11:65630979-65631241(+)$1	262	0	3	8.9999
nna	chr7:129098455-129098721(+)$1	266	110	113	8.9999
F::	chr3:47036714-47036995(+)$1	281	8	11	8.9999
mmm	chr4:16227866-16228186(-)$1	320	22	25	8.9999
III	chr4:83349070-83349286(-)$1	216	61	64	8.9999
EEE	chr4:174254034-174254245(-)$1	211	205	208	8.9999
::e	chrX:64737798-64738078(-)$1	280	1	4	8.9999
ccb	chr6:88411220-88411485(-)$1	265	55	58	8.9999
b[b	chr8:144877110-144877347(-)$1	237	26	29	8.9999
MME	chr7:128455695-128456042(+)$1	347	7	10	8.9999
:::	chr5:176981152-176981445(-)$1	293	0	3	8.9999
::C	chr2:132044607-132044885(+)$1	278	4	7	8.9999
c::	chr10:75866901-75867148(+)$1	247	67	70	8.9999
]ee	chr6:122792741-122793030(-)$1	289	23	26	8.9999
RRR	chr19:7707549-7707811(+)$1	262	34	37	8.9999
fff	chr18:694133-694413(-)$1	280	13	16	8.9999
nnn	chr14:100819958-100820233(-)$1	275	79	82	8.9999
hnn	chr16:89592720-89592976(+)$1	256	67	70	8.9999
fff	chr12:133360594-133360983(-)$1	389	35	38	8.9999
B{C	chr9:133470821-133471096(+)$1	275	2	5	8.9999
HHH	chr3:142747259-142747536(+)$1	277	25	28	8.9999
22g	chr2:233697465-233697724(+)$1	259	37	40	8.9999
::b	chr17:79167667-79167941(-)$1	274	109	112	8.9999
%%%	chr2:102486031-102486349(+)$1	318	73	76	8.9999
mmb	chr5:145524132-145524370(-)$1	238	40	43	8.9999
FFF	chr19:10405173-10405418(+)$1	245	8	11	8.9999
F::	chr19:16940517-16940776(+)$1	259	255	258	8.9999
KKB	chr1:45232397-45232648(+)$1	251	118	121	8.9999
]ff	chr11:61919197-61919457(+)$1	260	249	252	8.9999
hoo	chr17:47021173-47021434(-)$1	261	33	36	8.9999
mmm	chr12:122615326-122615596(+)$1	270	25	28	8.9999
BBE	chr15:93528745-93529009(+)$1	264	12	15	8.9999
b22	chr11:65631198-65631455(+)$1	257	87	90	8.9999
ddd	chr19:49669215-49669568(+)$1	353	8	11	8.9999
qqq	chrX:48935321-48935639(-)$1	318	89	92	8.9999
CCC	chr11:67810940-67811217(+)$1	277	26	29	8.9999
eee	chr18:21047302-21047590(+)$1	288	123	126	8.9999
HHH	chr11:596833-597110(+)$1	277	1	4	8.9999
e##	chr3:52561917-52562190(-)$1	273	111	114	8.9999
:::	chr6:99860334-99860602(-)$1	268	32	35	8.9999
eee	chr7:142651272-142651556(-)$1	284	39	42	8.9999
22f	chr10:121336023-121336355(-)$1	332	190	193	8.9999
ggg	chr18:55268845-55269109(-)$1	264	93	96	8.9999
FFF	chr11:290463-290677(+)$1	214	16	19	8.9999
"""	chr7:100284823-100285072(-)$1	249	137	140	8.9999
!!e	chr8:37756497-37756770(-)$1	273	12	15	8.9999
ccc	chr22:50876560-50876816(+)$1	256	60	63	8.9999
fff	chrX:106359812-106360082(-)$1	270	35	38	8.9999
ggg	chr8:145652189-145652444(-)$1	255	26	29	8.9999
nnn	chr7:139083239-139083513(+)$1	274	104	107	8.9999

#DB
(..	chr17:4575484-4575729(-)$1	1	49	52	8.9999
..(	chr3:195796219-195796492(-)$1	1	3	6	8.9999
)))	chr19:17449341-17449648(+)$1	1	32	35	8.9999
(((	chr5:179044718-179045027(-)$1	1	35	38	8.9999
...	chr1:31422943-31423182(-)$1	1	117	120	8.9999
((.	chr15:91527823-91528077(-)$1	1	23	26	8.9999
(((	chr4:994324-994612(+)$1	1	96	99	8.9999
...	chr11:57562986-57563294(+)$1	1	104	107	8.9999
)))	chr15:63908629-63908887(-)$1	1	163	166	8.9999
(((	chr21:38852977-38853232(+)$1	1	5	8	8.9999
...	chr19:58696969-58697340(+)$1	1	154	157	8.9999
(((	chr6:43738508-43738788(+)$1	1	18	21	8.9999
(((	chr19:55649303-55649543(-)$1	1	68	71	8.9999
((.	chr12:56716789-56717093(-)$1	1	15	18	8.9999
(((	chr1:90470462-90470710(+)$1	1	53	56	8.9999
(((	chr7:152006997-152007261(-)$1	1	11	14	8.9999
..)	chr7:139044911-139045181(+)$1	1	188	191	8.9999
..(	chr4:1741582-1741805(+)$1	1	68	71	8.9999
(((	chr19:7711064-7711338(+)$1	1	235	238	8.9999
(((	chr16:67273160-67273454(-)$1	1	26	29	8.9999
(((	chr11:6625393-6625719(+)$1	1	15	18	8.9999
(((	chr12:133313406-133313746(-)$1	1	52	55	8.9999
(.(	chr7:128394213-128394496(+)$1	1	51	54	8.9999
..(	chr2:74684391-74684693(+)$1	1	70	73	8.9999
(((	chr11:291920-292191(+)$1	1	7	10	8.9999
(((	chr5:53606096-53606387(-)$1	1	1	4	8.9999
).)	chr19:8528272-8528490(+)$1	1	147	150	8.9999
((.	chr7:72418844-72419119(-)$1	1	40	43	8.9999
..(	chr8:117862759-117863024(-)$1	1	30	33	8.9999
(((	chr20:42086974-42087241(+)$1	1	177	180	8.9999
.((	chr16:89971296-89971551(+)$1	1	14	17	8.9999
...	chr4:80898653-80898932(-)$1	1	29	32	8.9999
.(.	chr6:31857206-31857459(-)$1	1	38	41	8.9999
...	chr6:168352623-168352943(+)$1	1	39	42	8.9999
..)	chr12:104332043-104332298(+)$1	1	43	46	8.9999
(((	chr7:150820777-150821054(+)$1	1	16	19	8.9999
...	chr12:133373018-133373374(-)$1	1	15	18	8.9999
(.(	chr5:137894145-137894383(-)$1	1	17	20	8.9999
(((	chr5:225977-226271(+)$1	1	91	94	8.9999
(.(	chrX:70757734-70758026(+)$1	1	30	33	8.9999
(((	chr17:80151713-80152019(-)$1	1	150	153	8.9999
..)	chr13:33101417-33101710(-)$1	1	163	166	8.9999
)).	chr4:59221-59436(+)$1	1	146	149	8.9999
)))	chr7:99096273-99096531(-)$1	1	8	11	8.9999
(((	chr17:26910860-26911103(-)$1	1	4	7	8.9999
.((	chr17:26912452-26912708(-)$1	1	40	43	8.9999
..(	chr11:65630979-65631241(+)$1	1	0	3	8.9999
..)	chr7:129098455-129098721(+)$1	1	110	113	8.9999
(..	chr3:47036714-47036995(+)$1	1	8	11	8.9999
...	chr4:16227866-16228186(-)$1	1	22	25	8.9999
(((	chr4:83349070-83349286(-)$1	1	61	64	8.9999
)))	chr4:174254034-174254245(-)$1	1	205	208	8.9999
..(	chrX:64737798-64738078(-)$1	1	1	4	8.9999
))(	chr6:88411220-88411485(-)$1	1	55	58	8.9999
(.(	chr8:144877110-144877347(-)$1	1	26	29	8.9999
..(	chr7:128455695-128456042(+)$1	1	7	10	8.9999
...	chr5:176981152-176981445(-)$1	1	0	3	8.9999
..(	chr2:132044607-132044885(+)$1	1	4	7	8.9999
)..	chr10:75866901-75867148(+)$1	1	67	70	8.9999
.))	chr6:122792741-122793030(-)$1	1	23	26	8.9999
...	chr19:7707549-7707811(+)$1	1	34	37	8.9999
)))	chr18:694133-694413(-)$1	1	13	16	8.9999
...	chr14:100819958-100820233(-)$1	1	79	82	8.9999
(..	chr16:89592720-89592976(+)$1	1	67	70	8.9999
)))	chr12:133360594-133360983(-)$1	1	35	38	8.9999
(.(	chr9:133470821-133471096(+)$1	1	2	5	8.9999
(((	chr3:142747259-142747536(+)$1	1	25	28	8.9999
..)	chr2:233697465-233697724(+)$1	1	37	40	8.9999
..(	chr17:79167667-79167941(-)$1	1	109	112	8.9999
...	chr2:102486031-102486349(+)$1	1	73	76	8.9999
..)	chr5:145524132-145524370(-)$1	1	40	43	8.9999
(((	chr19:10405173-10405418(+)$1	1	8	11	8.9999
)..	chr19:16940517-16940776(+)$1	1	255	258	8.9999
..(	chr1:45232397-45232648(+)$1	1	118	121	8.9999
.))	chr11:61919197-61919457(+)$1	1	249	252	8.9999
(..	chr17:47021173-47021434(-)$1	1	33	36	8.9999
...	chr12:122615326-122615596(+)$1	1	25	28	8.9999
(((	chr15:93528745-93529009(+)$1	1	12	15	8.9999
)..	chr11:65631198-65631455(+)$1	1	87	90	8.9999
)))	chr19:49669215-49669568(+)$1	1	8	11	8.9999
...	chrX:48935321-48935639(-)$1	1	89	92	8.9999
(((	chr11:67810940-67811217(+)$1	1	26	29	8.9999
)))	chr18:21047302-21047590(+)$1	1	123	126	8.9999
(((	chr11:596833-597110(+)$1	1	1	4	8.9999
(..	chr3:52561917-52562190(-)$1	1	111	114	8.9999
...	chr6:99860334-99860602(-)$1	1	32	35	8.9999
(((	chr7:142651272-142651556(-)$1	1	39	42	8.9999
..)	chr10:121336023-121336355(-)$1	1	190	193	8.9999
)))	chr18:55268845-55269109(-)$1	1	93	96	8.9999
(((	chr11:290463-290677(+)$1	1	16	19	8.9999
...	chr7:100284823-100285072(-)$1	1	137	140	8.9999
..(	chr8:37756497-37756770(-)$1	1	12	15	8.9999
)))	chr22:50876560-50876816(+)$1	1	60	63	8.9999
(((	chrX:106359812-106360082(-)$1	1	35	38	8.9999
(((	chr8:145652189-145652444(-)$1	1	26	29	8.9999
...	chr7:139083239-139083513(+)$1	1	104	107	8.9999

#PSSM
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_CDS_m1_run1.nuc.txt

#NT
UGGG	chr2:74701651-74701925(-)$1	274	155	159	11.9999
UGGG	chr1:46073535-46073847(+)$1	312	148	152	11.9999
UGGG	chr16:89346553-89346829(-)$1	276	163	167	11.9999
UGGG	chr11:116661379-116661660(-)$1	281	68	72	11.9999
UGGG	chr7:150776678-150776973(-)$1	295	69	73	11.9999
UGGG	chr7:26233095-26233349(-)$1	254	117	121	11.9999
UGGG	chr17:40269709-40269932(-)$1	223	160	164	11.9999
UGGG	chr9:117037888-117038148(+)$1	260	113	117	11.9999
UGGG	chr14:23450739-23450992(-)$1	253	16	20	11.9999
UGGG	chr17:61890586-61890918(+)$1	332	237	241	11.9999
UGGG	chr9:131456197-131456421(+)$1	224	181	185	11.9999
UGGG	chr6:52133787-52134067(-)$1	280	11	15	11.9999
UGGG	chr2:86260650-86260930(-)$1	280	125	129	11.9999
UGGG	chr2:232576581-232576787(+)$1	206	29	33	11.9999
uggg	chr9:100777544-100777790(+)$1	246	114	118	11.9999
UGGG	chr20:60898731-60898950(-)$1	219	125	129	11.9999
UGGG	chr13:113980166-113980480(-)$1	314	16	20	11.9999
UGGG	chr10:102748310-102748596(+)$1	286	20	24	11.9999
uggg	chr20:3765553-3765860(-)$1	307	54	58	11.9999
UGGG	chr16:66768063-66768315(-)$1	252	203	207	11.9999
UGGG	chr6:31936968-31937257(+)$1	289	173	177	11.9999
UGGG	chr16:841221-841474(+)$1	253	115	119	11.9999
UGGG	chr2:70056989-70057298(+)$1	309	2	6	11.9999
UGGG	chr6:167412764-167413112(+)$1	348	252	256	11.9999
UGGG	chr20:31022519-31022823(+)$1	304	104	108	11.9999
UGGG	chr20:52198008-52198239(-)$1	231	214	218	11.9999
UGGG	chr20:61542662-61542954(-)$1	292	68	72	11.9999
UGGG	chr14:62162315-62162649(+)$1	334	164	168	11.9999
UGGG	chr6:154831054-154831316(-)$1	262	132	136	11.9999
UGGG	chr8:145579718-145579975(-)$1	257	27	31	11.9999
UGGG	chr14:24900772-24901109(+)$1	337	124	128	11.9999
UGGG	chr22:46685232-46685551(+)$1	319	29	33	11.9999
UGGG	chr14:23528278-23528488(-)$1	210	119	123	11.9999
UGGG	chr9:117052990-117053200(+)$1	210	116	120	11.9999
UGGG	chr11:71724217-71724493(-)$1	276	120	124	11.9999
UGGG	chr20:3893130-3893382(+)$1	252	134	138	11.9999
UGGG	chr14:24109001-24109216(+)$1	215	15	19	11.9999
UGGG	chr22:32007024-32007303(+)$1	279	133	137	11.9999
UGGG	chr16:30002116-30002395(+)$1	279	194	198	11.9999
UGGG	chr18:55711818-55712041(+)$1	223	37	41	11.9999
ugGG	chr11:126145864-126146227(+)$1	363	344	348	11.9999
UGGG	chr16:22019563-22019861(+)$1	298	38	42	11.9999
UGGG	chr22:21799973-21800290(+)$1	317	103	107	11.9999
UGGG	chr5:78373202-78373526(+)$1	324	123	127	11.9999
UGGG	chr17:55184375-55184642(+)$1	267	84	88	11.9999
UGGG	chr6:31857144-31857449(-)$1	305	34	38	11.9999
UGGG	chrX:18942408-18942679(-)$1	271	228	232	11.9999
UGGG	chr17:34856573-34856893(-)$1	320	111	115	11.9999
UGGG	chr16:22337033-22337349(+)$1	316	67	71	11.9999
UGGG	chr2:74709632-74709926(-)$1	294	39	43	11.9999
UGGG	chr9:131456123-131456396(+)$1	273	255	259	11.9999
UGGG	chr8:94746584-94746916(-)$1	332	72	76	11.9999
UGGG	chr11:85375448-85375725(-)$1	277	114	118	11.9999
UGGG	chr2:178129123-178129402(-)$1	279	160	164	11.9999
UGGG	chr1:150192900-150193164(-)$1	264	203	207	11.9999
UGGG	chr12:56490260-56490485(+)$1	225	175	179	11.9999
UGGG	chr18:55997915-55998230(+)$1	315	57	61	11.9999
UGGG	chr20:3869933-3870211(+)$1	278	20	24	11.9999
UGGG	chr22:45724200-45724427(+)$1	227	75	79	11.9999
UGGG	chr17:55183714-55183983(+)$1	269	21	25	11.9999
UGGG	chr17:48629360-48629630(+)$1	270	66	70	11.9999
UGGG	chr16:2570668-2570942(+)$1	274	111	115	11.9999
UGGG	chr2:27593044-27593302(-)$1	258	232	236	11.9999
UGGG	chr4:83347519-83347770(-)$1	251	102	106	11.9999
UGGG	chr9:116999160-116999402(+)$1	242	10	14	11.9999
UGGG	chr20:32247183-32247462(-)$1	279	14	18	11.9999
UGGG	chr22:45724172-45724375(+)$1	203	21	25	11.9999
UGGG	chr11:71942441-71942679(+)$1	238	58	62	11.9999
UGGG	chr3:184098397-184098683(+)$1	286	47	51	11.9999
UGGG	chr6:44279028-44279296(-)$1	268	45	49	11.9999
UGGG	chr17:34171740-34172051(+)$1	311	251	255	11.9999
UGGG	chr12:133360601-133360911(-)$1	310	194	198	11.9999
UGGG	chr9:117046904-117047108(+)$1	204	115	119	11.9999
UGGG	chr22:24036337-24036659(-)$1	322	60	64	11.9999
UGGG	chr7:26233149-26233383(-)$1	234	151	155	11.9999
UGGG	chr2:75937752-75938063(-)$1	311	168	172	11.9999
UGGG	chr20:62311915-62312171(+)$1	256	44	48	11.9999
UGGG	chr2:216946213-216946469(-)$1	256	14	18	11.9999
UGGG	chr6:138753465-138753718(-)$1	253	24	28	11.9999
UGGG	chr1:153617449-153617727(+)$1	278	82	86	11.9999
UGGG	chr3:48670808-48671020(-)$1	212	59	63	11.9999
UGGG	chr20:34302145-34302376(-)$1	231	225	229	11.9999
UGGG	chr2:74708850-74709109(-)$1	259	38	42	11.9999
uggg	chr3:184103733-184103936(+)$1	203	38	42	11.9999
UGGG	chr2:128180564-128180784(+)$1	220	158	162	11.9999
UGGG	chr20:42086969-42087186(+)$1	217	211	215	11.9999
UGGG	chr9:100773458-100773728(+)$1	270	264	268	11.9999
UGGG	chr22:24437557-24437821(+)$1	264	70	74	11.9999
UGGG	chr17:46052789-46053038(+)$1	249	11	15	11.9999

#otherMatches

#Struct PSSM
[eee	chr17:27074138-27074401(+)$1	263	31	35	11.9999
IIII	chr2:74701651-74701925(-)$1	274	155	159	11.9999
e22d	chr1:46073535-46073847(+)$1	312	148	152	11.9999
]eee	chr16:89346553-89346829(-)$1	276	163	167	11.9999
GGFF	chr11:116661379-116661660(-)$1	281	68	72	11.9999
ffff	chr7:150776678-150776973(-)$1	295	69	73	11.9999
ccc2	chr7:26233095-26233349(-)$1	254	117	121	11.9999
}DDD	chr17:40269709-40269932(-)$1	223	160	164	11.9999
!ddd	chr9:117037888-117038148(+)$1	260	113	117	11.9999
gggg	chr14:23450739-23450992(-)$1	253	16	20	11.9999
hhhh	chr17:61890586-61890918(+)$1	332	237	241	11.9999
ga[a	chr9:131456197-131456421(+)$1	224	181	185	11.9999
eeee	chr6:52133787-52134067(-)$1	280	11	15	11.9999
ee::	chr2:86260650-86260930(-)$1	280	125	129	11.9999
iii:	chr2:232576581-232576787(+)$1	206	29	33	11.9999
22hh	chr9:100777544-100777790(+)$1	246	114	118	11.9999
]eee	chr20:60898731-60898950(-)$1	219	125	129	11.9999
[fff	chr13:113980166-113980480(-)$1	314	16	20	11.9999
GHHH	chr10:102748310-102748596(+)$1	286	20	24	11.9999
::::	chr20:3765553-3765860(-)$1	307	54	58	11.9999
FGGG	chr16:66768063-66768315(-)$1	252	203	207	11.9999
3ddd	chr6:31936968-31937257(+)$1	289	173	177	11.9999
GGGG	chr16:841221-841474(+)$1	253	115	119	11.9999
::==	chr2:70056989-70057298(+)$1	309	2	6	11.9999
dd!!	chr6:167412764-167413112(+)$1	348	252	256	11.9999
IIII	chr20:31022519-31022823(+)$1	304	104	108	11.9999
e]a]	chr20:52198008-52198239(-)$1	231	214	218	11.9999
nnnn	chr20:61542662-61542954(-)$1	292	68	72	11.9999
IIII	chr14:62162315-62162649(+)$1	334	164	168	11.9999
44hh	chr6:154831054-154831316(-)$1	262	132	136	11.9999
fffe	chr8:145579718-145579975(-)$1	257	27	31	11.9999
3ccc	chr14:24900772-24901109(+)$1	337	124	128	11.9999
]fff	chr22:46685232-46685551(+)$1	319	29	33	11.9999
bbee	chr14:23528278-23528488(-)$1	210	119	123	11.9999
]ccc	chr9:117052990-117053200(+)$1	210	116	120	11.9999
oooo	chr11:71724217-71724493(-)$1	276	120	124	11.9999
C{DD	chr20:3893130-3893382(+)$1	252	134	138	11.9999
[eee	chr14:24109001-24109216(+)$1	215	15	19	11.9999
ffff	chr22:32007024-32007303(+)$1	279	133	137	11.9999
uuuu	chr16:30002116-30002395(+)$1	279	194	198	11.9999
dd]a	chr18:55711818-55712041(+)$1	223	37	41	11.9999
JJJJ	chr11:126145864-126146227(+)$1	363	344	348	11.9999
hhhh	chr16:22019563-22019861(+)$1	298	38	42	11.9999
====	chr22:21799973-21800290(+)$1	317	103	107	11.9999
====	chr5:78373202-78373526(+)$1	324	123	127	11.9999
oooo	chr17:55184375-55184642(+)$1	267	84	88	11.9999
d$$$	chr6:31857144-31857449(-)$1	305	34	38	11.9999
ffff	chrX:18942408-18942679(-)$1	271	228	232	11.9999
dddd	chr17:34856573-34856893(-)$1	320	111	115	11.9999
mmmh	chr16:22337033-22337349(+)$1	316	67	71	11.9999
:::A	chr2:74709632-74709926(-)$1	294	39	43	11.9999
ccdd	chr9:131456123-131456396(+)$1	273	255	259	11.9999
eeee	chr8:94746584-94746916(-)$1	332	72	76	11.9999
ibbe	chr11:85375448-85375725(-)$1	277	114	118	11.9999
leee	chr2:178129123-178129402(-)$1	279	160	164	11.9999
eee8	chr1:150192900-150193164(-)$1	264	203	207	11.9999
EEEE	chr12:56490260-56490485(+)$1	225	175	179	11.9999
cccm	chr18:55997915-55998230(+)$1	315	57	61	11.9999
mmdd	chr20:3869933-3870211(+)$1	278	20	24	11.9999
hhhh	chr22:45724200-45724427(+)$1	227	75	79	11.9999
EEEB	chr17:55183714-55183983(+)$1	269	21	25	11.9999
====	chr17:48629360-48629630(+)$1	270	66	70	11.9999
dddd	chr16:2570668-2570942(+)$1	274	111	115	11.9999
mmcc	chr2:27593044-27593302(-)$1	258	232	236	11.9999
cc!!	chr4:83347519-83347770(-)$1	251	102	106	11.9999
iiii	chr9:116999160-116999402(+)$1	242	10	14	11.9999
ccee	chr20:32247183-32247462(-)$1	279	14	18	11.9999
hhhh	chr22:45724172-45724375(+)$1	203	21	25	11.9999
ffff	chr11:71942441-71942679(+)$1	238	58	62	11.9999
Cddd	chr3:184098397-184098683(+)$1	286	47	51	11.9999
e::C	chr6:44279028-44279296(-)$1	268	45	49	11.9999
cmmm	chr17:34171740-34172051(+)$1	311	251	255	11.9999
ffff	chr12:133360601-133360911(-)$1	310	194	198	11.9999
~~DD	chr9:117046904-117047108(+)$1	204	115	119	11.9999
leee	chr22:24036337-24036659(-)$1	322	60	64	11.9999
6666	chr7:26233149-26233383(-)$1	234	151	155	11.9999
====	chr2:75937752-75938063(-)$1	311	168	172	11.9999
""dd	chr20:62311915-62312171(+)$1	256	44	48	11.9999
eerr	chr2:216946213-216946469(-)$1	256	14	18	11.9999
:CCC	chr6:138753465-138753718(-)$1	253	24	28	11.9999
##dd	chr1:153617449-153617727(+)$1	278	82	86	11.9999
[eee	chr3:48670808-48671020(-)$1	212	59	63	11.9999
::::	chr20:34302145-34302376(-)$1	231	225	229	11.9999
mmmm	chr2:74708850-74709109(-)$1	259	38	42	11.9999
!ccc	chr3:184103733-184103936(+)$1	203	38	42	11.9999
}CCC	chr2:128180564-128180784(+)$1	220	158	162	11.9999
4ddd	chr20:42086969-42087186(+)$1	217	211	215	11.9999
hhhh	chr9:100773458-100773728(+)$1	270	264	268	11.9999
KBBE	chr22:24437557-24437821(+)$1	264	70	74	11.9999
:HHH	chr17:46052789-46053038(+)$1	249	11	15	11.9999

#DB
.(((	chr17:27074138-27074401(+)$1	1	31	35	11.9999
((((	chr2:74701651-74701925(-)$1	1	155	159	11.9999
)..)	chr1:46073535-46073847(+)$1	1	148	152	11.9999
.)))	chr16:89346553-89346829(-)$1	1	163	167	11.9999
((((	chr11:116661379-116661660(-)$1	1	68	72	11.9999
))))	chr7:150776678-150776973(-)$1	1	69	73	11.9999
))).	chr7:26233095-26233349(-)$1	1	117	121	11.9999
.)))	chr17:40269709-40269932(-)$1	1	160	164	11.9999
.(((	chr9:117037888-117038148(+)$1	1	113	117	11.9999
((((	chr14:23450739-23450992(-)$1	1	16	20	11.9999
))))	chr17:61890586-61890918(+)$1	1	237	241	11.9999
)(.(	chr9:131456197-131456421(+)$1	1	181	185	11.9999
))))	chr6:52133787-52134067(-)$1	1	11	15	11.9999
))..	chr2:86260650-86260930(-)$1	1	125	129	11.9999
))).	chr2:232576581-232576787(+)$1	1	29	33	11.9999
..))	chr9:100777544-100777790(+)$1	1	114	118	11.9999
.)))	chr20:60898731-60898950(-)$1	1	125	129	11.9999
.(((	chr13:113980166-113980480(-)$1	1	16	20	11.9999
((((	chr10:102748310-102748596(+)$1	1	20	24	11.9999
....	chr20:3765553-3765860(-)$1	1	54	58	11.9999
))))	chr16:66768063-66768315(-)$1	1	203	207	11.9999
.)))	chr6:31936968-31937257(+)$1	1	173	177	11.9999
))))	chr16:841221-841474(+)$1	1	115	119	11.9999
..((	chr2:70056989-70057298(+)$1	1	2	6	11.9999
((..	chr6:167412764-167413112(+)$1	1	252	256	11.9999
((((	chr20:31022519-31022823(+)$1	1	104	108	11.9999
).).	chr20:52198008-52198239(-)$1	1	214	218	11.9999
....	chr20:61542662-61542954(-)$1	1	68	72	11.9999
((((	chr14:62162315-62162649(+)$1	1	164	168	11.9999
..))	chr6:154831054-154831316(-)$1	1	132	136	11.9999
))))	chr8:145579718-145579975(-)$1	1	27	31	11.9999
.)))	chr14:24900772-24901109(+)$1	1	124	128	11.9999
.)))	chr22:46685232-46685551(+)$1	1	29	33	11.9999
))))	chr14:23528278-23528488(-)$1	1	119	123	11.9999
.)))	chr9:117052990-117053200(+)$1	1	116	120	11.9999
....	chr11:71724217-71724493(-)$1	1	120	124	11.9999
(.((	chr20:3893130-3893382(+)$1	1	134	138	11.9999
.(((	chr14:24109001-24109216(+)$1	1	15	19	11.9999
))))	chr22:32007024-32007303(+)$1	1	133	137	11.9999
....	chr16:30002116-30002395(+)$1	1	194	198	11.9999
)).)	chr18:55711818-55712041(+)$1	1	37	41	11.9999
))))	chr11:126145864-126146227(+)$1	1	344	348	11.9999
((((	chr16:22019563-22019861(+)$1	1	38	42	11.9999
))))	chr22:21799973-21800290(+)$1	1	103	107	11.9999
((((	chr5:78373202-78373526(+)$1	1	123	127	11.9999
....	chr17:55184375-55184642(+)$1	1	84	88	11.9999
(...	chr6:31857144-31857449(-)$1	1	34	38	11.9999
))))	chrX:18942408-18942679(-)$1	1	228	232	11.9999
((((	chr17:34856573-34856893(-)$1	1	111	115	11.9999
...)	chr16:22337033-22337349(+)$1	1	67	71	11.9999
...(	chr2:74709632-74709926(-)$1	1	39	43	11.9999
))))	chr9:131456123-131456396(+)$1	1	255	259	11.9999
((((	chr8:94746584-94746916(-)$1	1	72	76	11.9999
)(((	chr11:85375448-85375725(-)$1	1	114	118	11.9999
.)))	chr2:178129123-178129402(-)$1	1	160	164	11.9999
))).	chr1:150192900-150193164(-)$1	1	203	207	11.9999
))))	chr12:56490260-56490485(+)$1	1	175	179	11.9999
(((.	chr18:55997915-55998230(+)$1	1	57	61	11.9999
..))	chr20:3869933-3870211(+)$1	1	20	24	11.9999
))))	chr22:45724200-45724427(+)$1	1	75	79	11.9999
((((	chr17:55183714-55183983(+)$1	1	21	25	11.9999
))))	chr17:48629360-48629630(+)$1	1	66	70	11.9999
))))	chr16:2570668-2570942(+)$1	1	111	115	11.9999
..))	chr2:27593044-27593302(-)$1	1	232	236	11.9999
((..	chr4:83347519-83347770(-)$1	1	102	106	11.9999
((((	chr9:116999160-116999402(+)$1	1	10	14	11.9999
((((	chr20:32247183-32247462(-)$1	1	14	18	11.9999
((((	chr22:45724172-45724375(+)$1	1	21	25	11.9999
((((	chr11:71942441-71942679(+)$1	1	58	62	11.9999
((((	chr3:184098397-184098683(+)$1	1	47	51	11.9999
)..(	chr6:44279028-44279296(-)$1	1	45	49	11.9999
(...	chr17:34171740-34172051(+)$1	1	251	255	11.9999
((((	chr12:133360601-133360911(-)$1	1	194	198	11.9999
..))	chr9:117046904-117047108(+)$1	1	115	119	11.9999
.)))	chr22:24036337-24036659(-)$1	1	60	64	11.9999
....	chr7:26233149-26233383(-)$1	1	151	155	11.9999
((((	chr2:75937752-75938063(-)$1	1	168	172	11.9999
..((	chr20:62311915-62312171(+)$1	1	44	48	11.9999
((..	chr2:216946213-216946469(-)$1	1	14	18	11.9999
.(((	chr6:138753465-138753718(-)$1	1	24	28	11.9999
..((	chr1:153617449-153617727(+)$1	1	82	86	11.9999
.(((	chr3:48670808-48671020(-)$1	1	59	63	11.9999
....	chr20:34302145-34302376(-)$1	1	225	229	11.9999
....	chr2:74708850-74709109(-)$1	1	38	42	11.9999
.(((	chr3:184103733-184103936(+)$1	1	38	42	11.9999
.)))	chr2:128180564-128180784(+)$1	1	158	162	11.9999
.)))	chr20:42086969-42087186(+)$1	1	211	215	11.9999
))))	chr9:100773458-100773728(+)$1	1	264	268	11.9999
.(((	chr22:24437557-24437821(+)$1	1	70	74	11.9999
.(((	chr17:46052789-46053038(+)$1	1	11	15	11.9999

#PSSM
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	1079.9999999999995
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_CDS_m3_run2.nuc.txt

#NT
GGUUGAGG	chrM:14366-14601(-)$1	235	181	189	16.7272
GGCGGAGG	chr19:10407083-10407349(+)$1	266	166	174	13.7727
GGUAGAGG	chr15:38776655-38776900(+)$1	245	49	57	14.4545
GGUUGAGA	chr1:109289274-109289508(+)$1	234	153	161	13.0909
GGGUGGGG	chr19:18547582-18547872(-)$1	290	110	118	12.4090
GGAGGAGG	chr2:54197761-54198043(-)$1	282	43	51	14.4545
GGGUGAGC	chrM:3459-3706(+)$1	247	205	213	13.5454
GGAGGAGG	chr7:77166720-77166992(+)$1	272	2	10	14.4545
GGAGGAGG	chrM:6537-6793(+)$1	256	36	44	14.4545
GGGUGAGC	chrM:3519-3749(+)$1	230	145	153	13.5454
ggcggagg	chr8:30669835-30670091(-)$1	256	46	54	13.7727
GGUUGAGG	chrM:14222-14432(-)$1	210	12	20	16.7272
GGAUGAGG	chr9:100774634-100774855(+)$1	221	106	114	16.0454
GGGUGAGC	chrM:3632-3876(+)$1	244	32	40	13.5454
GGUUGAGG	chrM:14218-14422(-)$1	204	2	10	16.7272
GGGAGAGG	chr17:34171422-34171704(+)$1	282	66	74	14.2272
gguagagg	chr15:38776586-38776855(+)$1	269	7	15	14.4545
UGAUGAGG	chrM:9813-10029(+)$1	216	165	173	11.4999
GAUUGAGG	chr15:79165208-79165491(+)$1	283	254	262	12.1818
GGGUGGGG	chr19:1104619-1104865(+)$1	246	77	85	12.4090
GGUGGAGG	chr8:25315656-25315901(-)$1	245	45	53	15.1363

#otherMatches

#Struct PSSM
=====bbv	chrM:3549-3773(+)$1	224	115	123	13.5454
ZZEEEEE}	chrM:14366-14601(-)$1	235	181	189	16.7272
ddd####e	chr19:10407083-10407349(+)$1	266	166	174	13.7727
::::::::	chr15:38776655-38776900(+)$1	245	49	57	14.4545
ggggg!!d	chr1:109289274-109289508(+)$1	234	153	161	13.0909
gg!!a[ii	chr19:18547582-18547872(-)$1	290	110	118	12.4090
nnna4444	chr2:54197761-54198043(-)$1	282	43	51	14.4545
=====bbv	chrM:3459-3706(+)$1	247	205	213	13.5454
::::::::	chr7:77166720-77166992(+)$1	272	2	10	14.4545
iiiiiiii	chrM:6537-6793(+)$1	256	36	44	14.4545
=====bbv	chrM:3519-3749(+)$1	230	145	153	13.5454
]dddd]cc	chr8:30669835-30670091(-)$1	256	46	54	13.7727
""dddd!!	chrM:14222-14432(-)$1	210	12	20	16.7272
EEEEE::c	chr9:100774634-100774855(+)$1	221	106	114	16.0454
=====bbv	chrM:3632-3876(+)$1	244	32	40	13.5454
::::::::	chrM:14218-14422(-)$1	204	2	10	16.7272
bboooooo	chr17:34171422-34171704(+)$1	282	66	74	14.2272
::::::::	chr15:38776586-38776855(+)$1	269	7	15	14.4545
mdddd]cc	chrM:9813-10029(+)$1	216	165	173	11.4999
ooooooa]	chr15:79165208-79165491(+)$1	283	254	262	12.1818
eeefffff	chr19:1104619-1104865(+)$1	246	77	85	12.4090
ddd:::cc	chr8:25315656-25315901(-)$1	245	45	53	15.1363

#DB
(((((((.	chrM:3549-3773(+)$1	1	115	123	13.5454
..))))).	chrM:14366-14601(-)$1	1	181	189	16.7272
(((....(	chr19:10407083-10407349(+)$1	1	166	174	13.7727
........	chr15:38776655-38776900(+)$1	1	49	57	14.4545
(((((..(	chr1:109289274-109289508(+)$1	1	153	161	13.0909
((..(.((	chr19:18547582-18547872(-)$1	1	110	118	12.4090
...)....	chr2:54197761-54198043(-)$1	1	43	51	14.4545
(((((((.	chrM:3459-3706(+)$1	1	205	213	13.5454
........	chr7:77166720-77166992(+)$1	1	2	10	14.4545
))))))))	chrM:6537-6793(+)$1	1	36	44	14.4545
(((((((.	chrM:3519-3749(+)$1	1	145	153	13.5454
.)))).))	chr8:30669835-30670091(-)$1	1	46	54	13.7727
..((((..	chrM:14222-14432(-)$1	1	12	20	16.7272
(((((..(	chr9:100774634-100774855(+)$1	1	106	114	16.0454
(((((((.	chrM:3632-3876(+)$1	1	32	40	13.5454
........	chrM:14218-14422(-)$1	1	2	10	16.7272
((......	chr17:34171422-34171704(+)$1	1	66	74	14.2272
........	chr15:38776586-38776855(+)$1	1	7	15	14.4545
.)))).))	chrM:9813-10029(+)$1	1	165	173	11.4999
......).	chr15:79165208-79165491(+)$1	1	254	262	12.1818
))))))))	chr19:1104619-1104865(+)$1	1	77	85	12.4090
)))...((	chr8:25315656-25315901(-)$1	1	45	53	15.1363

#PSSM
G : 0.86	g : 0.09	U : 0.04	
G : 0.86	g : 0.09	A : 0.04	
G : 0.31	U : 0.31	A : 0.22	C : 0.04	c : 0.04	u : 0.04	
U : 0.59	G : 0.22	A : 0.09	g : 0.04	a : 0.04	
G : 0.90	g : 0.09	
A : 0.81	G : 0.09	a : 0.09	
G : 0.90	g : 0.09	
G : 0.68	C : 0.18	g : 0.09	A : 0.04	

#score	311.18181818181813
#seq	22
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_CDS_m1_run1.nuc.txt

#NT
gccgcggcgggcgcagggcggcc	chr16:89894848-89895104(+)$1	256	137	160	26.1929
cgggcggcgggcggcgggcuggc	chr3:52567609-52567899(-)$1	290	86	109	22.1578
GCGCggggcgggggcggcggggc	chr11:65325150-65325431(-)$1	281	45	68	23.4736
GCGGGAGCGGGAGUGGGGCGGGG	chr5:176981025-176981295(-)$1	270	98	121	22.9473
gcaacggcgggcgccggggcggc	chr17:46985879-46986153(+)$1	274	13	36	28.5614
ggggcggcgggguccggggacgc	chr19:460530-460774(-)$1	244	111	134	28.7368
gcggcugcgggggcggggggccg	chr1:27320426-27320697(+)$1	271	124	147	28.6491
gcggccgcggggcccggcgcggc	chr22:29279698-29279951(+)$1	253	191	214	29.7017
GCAGGGGCCGGGGCCGAGCGGGA	chr13:114144563-114144864(-)$1	301	161	184	23.3859
gggcgggcaggggacgggugggc	chr22:50722318-50722570(-)$1	252	33	56	21.8070
GGGUCGGCCCGGGCACGGGGGGC	chr19:2015468-2015751(-)$1	283	98	121	21.1929
gcgccgggcggggcugggcgggg	chr15:80215315-80215598(-)$1	283	125	148	24.4385
GCCGGGGCCGGGGACGGGGCGGG	chr16:1823165-1823423(+)$1	258	106	129	28.0350
gccgcgggugaggccgggggcgg	chr16:89895051-89895309(+)$1	258	144	167	24.0877
GCGGGCUCGGGGGCAGCGGCGUC	chr11:124669937-124670179(-)$1	242	68	91	21.9824
GCCGCGGCGGGGGGAGUGCUGGG	chr9:130160098-130160349(+)$1	251	103	126	23.4736
gcggcggccggAUCCAGGGCGGG	chr20:62371148-62371379(+)$1	231	3	26	23.7368
GCGGCGCUCGGGGUGGGGGAGCC	chr19:1104601-1104871(+)$1	270	85	108	21.3684
ccggccgcggggcccgcgggcUC	chr8:145687815-145688067(-)$1	252	63	86	21.6315
GCGGCGGCGGCGGAAGGUGGAUC	chrX:53222296-53222536(-)$1	240	75	98	21.8070
gcugggcagggggccggcggggc	chr2:42275202-42275460(+)$1	258	27	50	24.9649
gggcgggcgggcggcgggggggc	chr7:77166705-77166977(+)$1	272	105	128	26.1052
ccggcggcggcgccccgggcggc	chr17:7311430-7311681(+)$1	251	205	228	25.4912
GCGGCGUCCGGGGGAGGGGAGCC	chr9:74979420-74979699(-)$1	279	203	226	24.4385
gcggcggcggcagcagaggcggc	chr16:24741064-24741358(+)$1	294	170	193	27.3333
GCUGCGGUGGGGCGGGGGCUGGC	chr19:3543354-3543603(-)$1	249	50	73	22.4210
UCUGCGGGGGGGGGGGGGGGGGC	chr17:73900659-73900953(-)$1	294	80	103	27.3333
ggcccggcggcggcgcgggcggc	chr19:460830-461083(-)$1	253	225	248	21.6315
ggggcggcgggggcggcggcggc	chr2:231902513-231902748(+)$1	235	34	57	32.3333
gcggcggcggcagcgggcggggc	chr17:46985953-46986204(+)$1	251	53	76	28.9999
GCGGGGGUGGGGGGUGCGGGCGG	chr19:2272816-2273083(+)$1	267	88	111	24.1754
GGGACGGUGGGGGCGGGGGGCCC	chr17:79860506-79860775(-)$1	269	102	125	23.1228
gcggccgcggagcccggggcggg	chr15:78369834-78370042(-)$1	208	111	134	28.8245
gcggccgcggagcccggggcggg	chr15:78369842-78370059(-)$1	217	128	151	28.8245
GCCGAUGAGGAGGCCGCGGGGGG	chr7:150777690-150777949(-)$1	259	92	115	21.5438
gcggggccgagggaugcggggcc	chr16:87426130-87426483(+)$1	353	74	97	19.7894
ACGGCGGUGGGGGAGGGGGCGGC	chr17:30264209-30264498(+)$1	289	72	95	28.1228
gccgucgcgggggccgcggggAG	chr2:42275452-42275696(+)$1	244	29	52	24.1754
gccagggcggggaccgggggcgc	chr22:50354590-50354874(+)$1	284	122	145	25.6666
gccgcggccggggccgaggcgcg	chr20:61847050-61847321(-)$1	271	126	149	26.1929
GCAGCAGCGGGGGUCAGGGGAGG	chr17:79913316-79913634(-)$1	318	166	189	22.3333
GCCGAUGAGGAGGCCGCGGGGGG	chr7:150777598-150777874(-)$1	276	17	40	21.5438
gcuggggcugcgggcggcggggc	chr9:136223066-136223330(-)$1	264	24	47	23.3859
gcggccgcggagcccggggcggg	chr15:78369860-78370070(-)$1	210	139	162	28.8245
GCGGCGGCGCUGGUGGGGGGCGU	chr11:637284-637535(+)$1	251	122	145	23.1228
gcggccgcccgggcgggggAUGG	chr1:28845142-28845411(+)$1	269	11	34	22.3333
gcggcgcccgggccgggccgggc	chr19:1253807-1254083(+)$1	276	151	174	22.9473
gaggaggcggggggcgaggcggc	chr1:27022734-27023050(+)$1	316	256	279	27.3333
ccggguggggggcgcgggggggc	chr12:58005524-58005834(+)$1	310	121	144	23.5614
CCGGAGGCGGGAUgccggggggc	chr7:99755794-99756072(-)$1	278	209	232	21.0175
GCGGAGCCGGAGGCUGGGggcgg	chr14:102786104-102786370(+)$1	266	7	30	24.4385
ggggcggcgggggcggcggcggc	chr2:231902406-231902685(+)$1	279	141	164	32.3333
gcggcggcgggggccgggggggc	chr1:2160039-2160323(+)$1	284	98	121	41.0175
GCUGCAgagcgggccgggggagg	chr2:242447735-242448008(-)$1	273	107	130	22.1578
gcggcggcgcgggcggcuggggc	chr19:460720-460967(-)$1	247	115	138	28.8245
gcggggggaggggcaggggaggc	chr21:47565651-47565894(-)$1	243	169	192	28.0350

#otherMatches

#Struct PSSM
dddd]eeeee]ccc]ccc]dddd	chr9:80646039-80646327(-)$1	288	60	83	21.4561
hhhhhhhh::BB}DDDDYYBB:C	chr16:89894848-89895104(+)$1	256	137	160	26.1929
[eeeee[ddddccc[ffffffcc	chr3:52567609-52567899(-)$1	290	86	109	22.1578
nbb]eeeeebb[hhhhhhhh[cc	chr11:65325150-65325431(-)$1	281	45	68	23.4736
ggEEEEE{CCC{BBbba[dddd[	chr5:176981025-176981295(-)$1	270	98	121	22.9473
EEKKBB::::bb[gggggggnnn	chr17:46985879-46986153(+)$1	274	13	36	28.5614
]ahhhhhhhh[cccmmmmccc]h	chr19:460530-460774(-)$1	244	111	134	28.7368
]a22bb]eeeee]ccc]eeeee]	chr1:27320426-27320697(+)$1	271	124	147	28.6491
e]iiiiiiiii4444ccc=====	chr22:29279698-29279951(+)$1	253	191	214	29.7017
bb"""ddddccc[bbnnnnnbb2	chr13:114144563-114144864(-)$1	301	161	184	23.3859
dddddd[a!!bb[ffffff!!cc	chr22:50722318-50722570(-)$1	252	33	56	21.8070
JJJJDDDD::dddd[eeeeennn	chr19:2015468-2015751(-)$1	283	98	121	21.1929
=====[ccc[ccc!!ccca[fff	chr15:80215315-80215598(-)$1	283	125	148	24.4385
4eeeeedddd!!ccc[aqqqqqq	chr16:1823165-1823423(+)$1	258	106	129	28.0350
iiiiiii$$$$$eeeee!!bbll	chr16:89895051-89895309(+)$1	258	144	167	24.0877
DDD{A{CCCKKCCCLLLGGGGGG	chr11:124669937-124670179(-)$1	242	68	91	21.9824
22hhhhhhhh22dddd]bb]hhh	chr9:130160098-130160349(+)$1	251	103	126	23.4736
DDDFFFFFF:bbbbggggggg[b	chr20:62371148-62371379(+)$1	231	3	26	23.7368
cclllccceeeeeffffff]ccc	chr19:1104601-1104871(+)$1	270	85	108	21.3684
hhhhhhhgggggggmmmmggggg	chr8:145687815-145688067(-)$1	252	63	86	21.6315
bb:bbmmmmbb:::::::DDDD{	chrX:53222296-53222536(-)$1	240	75	98	21.8070
]bb]a:HHHHHHHH{CCC::ccc	chr2:42275202-42275460(+)$1	258	27	50	24.9649
!!ccc!!a[ccc[dddd!!aooo	chr7:77166705-77166977(+)$1	272	105	128	26.1052
::ccca[ccc[dddd[bb[bbmm	chr17:7311430-7311681(+)$1	251	205	228	25.4912
eeeeeaeeeeeccc[ccclllcc	chr9:74979420-74979699(-)$1	279	203	226	24.4385
iiiiiiiiiggggggg!!eeeee	chr16:24741064-24741358(+)$1	294	170	193	27.3333
{DDDD{AKKDDDDLLLGGGGGGG	chr19:3543354-3543603(-)$1	249	50	73	22.4210
cggggggg[==========ffff	chr17:73900659-73900953(-)$1	294	80	103	27.3333
EEEYYJJJJJJJJJJJEEEEE}B	chr19:460830-461083(-)$1	253	225	248	21.6315
cc[ccc[bb"""bb[bbmmmmbb	chr2:231902513-231902748(+)$1	235	34	57	32.3333
e]ffffffhhhhhhhh!!dddd[	chr17:46985953-46986204(+)$1	251	53	76	28.9999
hhhhhbb]ddddiiiiiiiii:h	chr19:2272816-2273083(+)$1	267	88	111	24.1754
GGG}DDDDDDDDEEEEE{CCCDD	chr17:79860506-79860775(-)$1	269	102	125	23.1228
[a[ccc[ccclllccc]ccc]a]	chr15:78369834-78370042(-)$1	208	111	134	28.8245
[a[ccc[ccclllccc]ccc]a]	chr15:78369842-78370059(-)$1	217	128	151	28.8245
CCCMMMMIIIIIIIII::cccmm	chr7:150777690-150777949(-)$1	259	92	115	21.5438
EEEEEEEEE{CCC{EEEEE:::b	chr16:87426130-87426483(+)$1	353	74	97	19.7894
ccmmmmccc666666ffffff:c	chr17:30264209-30264498(+)$1	289	72	95	28.1228
GGGGGGGHHHHHHHHGGGGGGG:	chr2:42275452-42275696(+)$1	244	29	52	24.1754
d"""bbdddd"""fffffflllf	chr22:50354590-50354874(+)$1	284	122	145	25.6666
]dddd:EEEEEKKDDDD{DDDDc	chr20:61847050-61847321(-)$1	271	126	149	26.1929
eeccc:ffffff[ddddbbmmmm	chr17:79913316-79913634(-)$1	318	166	189	22.3333
cccqqqqqqqqccc::ffffffq	chr7:150777598-150777874(-)$1	276	17	40	21.5438
ggmmmmgggggggbb:FFFFFFL	chr9:136223066-136223330(-)$1	264	24	47	23.3859
[a[ccc[ccclllccc]ccc]a]	chr15:78369860-78370070(-)$1	210	139	162	28.8245
II:bb[===========[bbmmm	chr11:637284-637535(+)$1	251	122	145	23.1228
]dddda[===========%%%%%	chr1:28845142-28845411(+)$1	269	11	34	22.3333
#ddddoooooodddd4444ffff	chr19:1253807-1254083(+)$1	276	151	174	22.9473
22bb]ffffff22bb]dddd===	chr1:27022734-27023050(+)$1	316	256	279	27.3333
adddd]cccccc]gggggggccc	chr12:58005524-58005834(+)$1	310	121	144	23.5614
CCCZZZDDDD::a[bb[ffffff	chr7:99755794-99756072(-)$1	278	209	232	21.0175
[bb[cccffffff"""hhhhhhh	chr14:102786104-102786370(+)$1	266	7	30	24.4385
a[ddddeeeeeddddccc[bbmm	chr2:231902406-231902685(+)$1	279	141	164	32.3333
E{FFFFFFKKFFFFFF::::::f	chr1:2160039-2160323(+)$1	284	98	121	41.0175
ccc[bb"""a[ddddoooooodd	chr2:242447735-242448008(-)$1	273	107	130	22.1578
JJJJJJJJJJEEEEE}BB}CCC}	chr19:460720-460967(-)$1	247	115	138	28.8245
eee]eeeee333bb::CCC}CCC	chr21:47565651-47565894(-)$1	243	169	192	28.0350

#DB
)))).))))).))).))).))))	chr9:80646039-80646327(-)$1	1	60	83	21.4561
))))))))..)).))))..)).(	chr16:89894848-89895104(+)$1	1	137	160	26.1929
.(((((.(((((((.((((((((	chr3:52567609-52567899(-)$1	1	86	109	22.1578
.)).)))))((.((((((((.((	chr11:65325150-65325431(-)$1	1	45	68	23.4736
))(((((.(((.(((((.((((.	chr5:176981025-176981295(-)$1	1	98	121	22.9473
((..((....((.(((((((...	chr17:46985879-46986153(+)$1	1	13	36	28.5614
.)((((((((.(((....))).)	chr19:460530-460774(-)$1	1	111	134	28.7368
.)..)).))))).))).))))).	chr1:27320426-27320697(+)$1	1	124	147	28.6491
).)))))))))....))))))))	chr22:29279698-29279951(+)$1	1	191	214	29.7017
((...(((((((.((.....)).	chr13:114144563-114144864(-)$1	1	161	184	23.3859
((((((.(..((.((((((..((	chr22:50722318-50722570(-)$1	1	33	56	21.8070
((((((((..((((.(((((...	chr19:2015468-2015751(-)$1	1	98	121	21.1929
(((((.(((.(((..((((.(((	chr15:80215315-80215598(-)$1	1	125	148	24.4385
.)))))((((..(((.(......	chr16:1823165-1823423(+)$1	1	106	129	28.0350
(((((((.....(((((..((..	chr16:89895051-89895309(+)$1	1	144	167	24.0877
(((.(.(((..(((...((((((	chr11:124669937-124670179(-)$1	1	68	91	21.9824
..))))))))..)))).)).)))	chr9:130160098-130160349(+)$1	1	103	126	23.4736
(((((((((.(((((((((((.(	chr20:62371148-62371379(+)$1	1	3	26	23.7368
((...)))))))))))))).)))	chr19:1104601-1104871(+)$1	1	85	108	21.3684
((((((((((((((....)))))	chr8:145687815-145688067(-)$1	1	63	86	21.6315
)).((....)).......((((.	chrX:53222296-53222536(-)$1	1	75	98	21.8070
.)).).((((((((.(((..(((	chr2:42275202-42275460(+)$1	1	27	50	24.9649
..(((..(.(((.((((..(...	chr7:77166705-77166977(+)$1	1	105	128	26.1052
..((((.(((.((((.((.((..	chr17:7311430-7311681(+)$1	1	205	228	25.4912
)))))))))))(((.(((...))	chr9:74979420-74979699(-)$1	1	203	226	24.4385
)))))))))(((((((..(((((	chr16:24741064-24741358(+)$1	1	170	193	27.3333
.((((.(..((((...(((((((	chr19:3543354-3543603(-)$1	1	50	73	22.4210
((((((((.((((((((((((((	chr17:73900659-73900953(-)$1	1	80	103	27.3333
)))..)))))))))))))))).)	chr19:460830-461083(-)$1	1	225	248	21.6315
((.(((.((...((.((....))	chr2:231902513-231902748(+)$1	1	34	57	32.3333
).))))))((((((((..((((.	chr17:46985953-46986204(+)$1	1	53	76	28.9999
))))))).))))))))))))).(	chr19:2272816-2273083(+)$1	1	88	111	24.1754
))).))))(((((((((.(((((	chr17:79860506-79860775(-)$1	1	102	125	23.1228
.(.(((.(((...))).))).).	chr15:78369834-78370042(-)$1	1	111	134	28.8245
.(.(((.(((...))).))).).	chr15:78369842-78370059(-)$1	1	128	151	28.8245
(((....(((((((((..(((..	chr7:150777690-150777949(-)$1	1	92	115	21.5438
(((((((((.(((.(((((...(	chr16:87426130-87426483(+)$1	1	74	97	19.7894
((....)))......)))))).(	chr17:30264209-30264498(+)$1	1	72	95	28.1228
((((((((((((((((((((((.	chr2:42275452-42275696(+)$1	1	29	52	24.1754
(...((((((...((((((...)	chr22:50354590-50354874(+)$1	1	122	145	25.6666
.)))).(((((..((((.(((((	chr20:61847050-61847321(-)$1	1	126	149	26.1929
))))).((((((.((((((....	chr17:79913316-79913634(-)$1	1	166	189	22.3333
(((........)))..((((((.	chr7:150777598-150777874(-)$1	1	17	40	21.5438
((....))))))))).((((((.	chr9:136223066-136223330(-)$1	1	24	47	23.3859
.(.(((.(((...))).))).).	chr15:78369860-78370070(-)$1	1	139	162	28.8245
((.((.(((((((((((.((...	chr11:637284-637535(+)$1	1	122	145	23.1228
.))))(.(((((((((((.....	chr1:28845142-28845411(+)$1	1	11	34	22.3333
.((((......))))....))))	chr19:1253807-1254083(+)$1	1	151	174	22.9473
..)).))))))..)).)))))))	chr1:27022734-27023050(+)$1	1	256	279	27.3333
))))).)))))).))))))))))	chr12:58005524-58005834(+)$1	1	121	144	23.5614
)))...))))..(.((.((((((	chr7:99755794-99756072(-)$1	1	209	232	21.0175
.((.(((((((((...(((((((	chr14:102786104-102786370(+)$1	1	7	30	24.4385
(.((((((((((((((((.((..	chr2:231902406-231902685(+)$1	1	141	164	32.3333
(.((((((..((((((......(	chr1:2160039-2160323(+)$1	1	98	121	41.0175
(((.((...(.((((......))	chr2:242447735-242448008(-)$1	1	107	130	22.1578
))))))))))))))).)).))).	chr19:460720-460967(-)$1	1	115	138	28.8245
))).)))))...))..))).)))	chr21:47565651-47565894(-)$1	1	169	192	28.0350

#PSSM
g : 0.52	G : 0.33	c : 0.08	U : 0.01	A : 0.01	C : 0.01	
c : 0.45	C : 0.35	g : 0.14	G : 0.03	a : 0.01	
g : 0.45	G : 0.22	c : 0.10	C : 0.07	U : 0.05	A : 0.03	u : 0.03	a : 0.01	
g : 0.50	G : 0.33	c : 0.07	a : 0.03	C : 0.01	U : 0.01	A : 0.01	
c : 0.43	C : 0.21	g : 0.15	G : 0.08	A : 0.07	u : 0.01	a : 0.01	
g : 0.47	G : 0.26	c : 0.12	A : 0.05	u : 0.03	U : 0.03	C : 0.01	
g : 0.59	G : 0.28	c : 0.05	U : 0.03	C : 0.03	
c : 0.52	C : 0.21	g : 0.08	U : 0.08	a : 0.03	A : 0.03	G : 0.01	
g : 0.47	G : 0.26	c : 0.10	C : 0.08	a : 0.03	u : 0.03	
g : 0.57	G : 0.31	c : 0.05	C : 0.03	a : 0.01	
g : 0.49	G : 0.26	c : 0.08	a : 0.07	A : 0.05	C : 0.01	U : 0.01	
g : 0.52	G : 0.31	c : 0.07	A : 0.05	a : 0.03	
g : 0.45	G : 0.31	c : 0.14	U : 0.03	u : 0.01	C : 0.01	a : 0.01	
c : 0.49	C : 0.14	g : 0.12	G : 0.08	U : 0.07	A : 0.05	a : 0.03	
c : 0.40	g : 0.14	G : 0.12	C : 0.10	A : 0.08	u : 0.05	a : 0.05	U : 0.03	
g : 0.57	G : 0.29	c : 0.07	A : 0.03	C : 0.01	
g : 0.49	G : 0.24	c : 0.10	C : 0.07	a : 0.05	A : 0.01	U : 0.01	
g : 0.52	G : 0.33	c : 0.10	U : 0.01	u : 0.01	
g : 0.56	G : 0.26	c : 0.08	C : 0.07	u : 0.01	
g : 0.38	c : 0.21	G : 0.19	C : 0.07	A : 0.05	a : 0.03	U : 0.03	u : 0.01	
g : 0.52	G : 0.24	c : 0.10	C : 0.05	A : 0.03	U : 0.01	a : 0.01	
g : 0.52	G : 0.26	c : 0.08	U : 0.05	C : 0.05	A : 0.01	
c : 0.45	G : 0.17	C : 0.17	g : 0.15	A : 0.01	U : 0.01	

#score	1433.5263157894738
#seq	57
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_transcript_m1_run2.nuc.txt

#NT
CGGGGAGG	chr11:126137840-126138086(-)$1	246	108	116	16.3076
GGGGAAGG	chr15:91455423-91455695(+)$1	272	104	112	15.7692
GGGGGUGG	chrX:70761529-70761810(+)$1	281	138	146	16.6923
GGGGGCGG	chr17:74732714-74732970(-)$1	256	58	66	16.8461
GGGGGAGG	chr17:66031922-66032178(+)$1	256	105	113	20.1538
AGGGGAGG	chr17:79894570-79894827(-)$1	257	0	8	16.3846
GGGGGAGG	chr1:245026385-245026641(-)$1	256	7	15	20.1538
GGGGGAGG	chr1:59247156-59247431(-)$1	275	26	34	20.1538
GGGGGUGG	chr11:568100-568380(-)$1	280	153	161	16.6923
gggggagg	chr3:100428670-100428988(+)$1	318	73	81	20.1538
AGGGGAGG	chr6:43745469-43745712(+)$1	243	57	65	16.3846
GGGGGUGG	chr7:1474538-1474785(-)$1	247	148	156	16.6923
GGGGGCGG	chr7:100479927-100480179(+)$1	252	42	50	16.8461
GGGGGCGG	chr11:66384506-66384784(+)$1	278	41	49	16.8461
GGCGGAGG	chr7:5569356-5569623(-)$1	267	90	98	15.8461
gggggagg	chr1:245026262-245026521(-)$1	259	158	166	20.1538
GGGGGUGG	chrX:70586272-70586623(+)$1	351	76	84	16.6923
GCGGGAGG	chr2:97535375-97535637(-)$1	262	113	121	15.9999
GGGGGAGG	chr5:154136430-154136705(+)$1	275	88	96	20.1538
GGGGGAGG	chrX:41193692-41193942(+)$1	250	117	125	20.1538
CGGGGAGG	chr6:32942491-32942749(+)$1	258	71	79	16.3076
GGGGGAGG	chr2:178077543-178077800(+)$1	257	46	54	20.1538
AGGGGAGG	chr5:43483682-43484015(-)$1	333	123	131	16.3846
GGGGGAGG	chr9:86594450-86594731(-)$1	281	82	90	20.1538
GGGGGAGG	chr16:2809954-2810226(+)$1	272	112	120	20.1538
GGGGGAGG	chr7:139056195-139056448(+)$1	253	111	119	20.1538
GGGGGAGG	chr19:2270024-2270227(+)$1	203	29	37	20.1538
GGGGGCGG	chr19:10406926-10407190(+)$1	264	26	34	16.8461
GGGGCAGG	chr20:42087426-42087677(+)$1	251	66	74	15.6923
GGGGGCGG	chr20:42087100-42087354(+)$1	254	90	98	16.8461
GGGGUAGG	chr17:62501631-62501936(-)$1	305	156	164	15.8461
GCGGGAGG	chr19:18682642-18682916(+)$1	274	109	117	15.9999
GGGGGCGG	chr19:2270116-2270376(+)$1	260	108	116	16.8461
GGGGUAGG	chr1:32832198-32832472(-)$1	274	109	117	15.8461
ggaggagg	chr4:174254766-174255105(-)$1	339	78	86	15.7692
UGGGGAGG	chr5:39073971-39074265(-)$1	294	92	100	16.4615
GGGGGAGG	chr17:73775409-73775671(-)$1	262	205	213	20.1538
UGGGGAGG	chr3:47894658-47894935(-)$1	277	140	148	16.4615
CGGGGAGG	chr10:71929890-71930169(-)$1	279	20	28	16.3076
GUGGGAGG	chr11:72414344-72414560(-)$1	216	71	79	16.1538
gggggugg	chr2:97559889-97560189(-)$1	300	40	48	16.6923
GGGGGAGG	chr4:100870965-100871245(-)$1	280	48	56	20.1538
UGGGGAGG	chr11:62622112-62622344(-)$1	232	96	104	16.4615
GGAGGAGG	chr20:42087583-42087826(+)$1	243	104	112	15.7692
GGCGGAGG	chr7:5569522-5569794(-)$1	272	261	269	15.8461
gggggagg	chr21:44527306-44527608(-)$1	302	154	162	20.1538
GGGAGAGG	chr17:26940991-26941300(-)$1	309	56	64	15.6923
ggUGGAGG	chr6:43738480-43738702(+)$1	222	85	93	15.6923
GGGGGCGG	chr4:71847769-71848022(+)$1	253	110	118	16.8461
GGGGUAGG	chr22:50032850-50033118(-)$1	268	104	112	15.8461
GUGGGAGG	chr6:43745707-43745956(+)$1	249	108	116	16.1538
UGGGGAGG	chr4:26859307-26859598(+)$1	291	160	168	16.4615
gggggugg	chr2:132038631-132038895(+)$1	264	21	29	16.6923
GGGGAAGG	chr7:6066100-6066390(-)$1	290	89	97	15.7692
GUGGGAGG	chr15:91454233-91454476(+)$1	243	112	120	16.1538
AGGGGAGG	chr6:43745896-43746139(+)$1	243	4	12	16.3846
GCGGGAGG	chr17:78311132-78311455(+)$1	323	172	180	15.9999
GGGAGAGG	chr12:123994627-123995021(-)$1	394	306	314	15.6923
UGGGGAGG	chr1:1328454-1328690(-)$1	236	213	221	16.4615
GGGUGAGG	chr19:11200287-11200582(+)$1	295	246	254	15.5384
GGGAGAGG	chr10:124914102-124914367(+)$1	265	49	57	15.6923
GGCGGAGG	chr19:10407044-10407264(+)$1	220	205	213	15.8461
gggggcgg	chr21:40720479-40720712(-)$1	233	39	47	16.8461
GUGGGAGG	chrX:12994441-12994697(+)$1	256	89	97	16.1538

#otherMatches

#Struct PSSM
{BB{EEEE	chr6:43745756-43745983(+)$1	227	59	67	16.1538
:ffffffp	chr11:126137840-126138086(-)$1	246	108	116	16.3076
]bb22fff	chr15:91455423-91455695(+)$1	272	104	112	15.7692
ffffgggg	chrX:70761529-70761810(+)$1	281	138	146	16.6923
b"""bb[f	chr17:74732714-74732970(-)$1	256	58	66	16.8461
qqqfffff	chr17:66031922-66032178(+)$1	256	105	113	20.1538
eeeee[ee	chr17:79894570-79894827(-)$1	257	0	8	16.3846
BBB{JJJJ	chr1:245026385-245026641(-)$1	256	7	15	20.1538
fff####a	chr1:59247156-59247431(-)$1	275	26	34	20.1538
dddbb[cc	chr11:568100-568380(-)$1	280	153	161	16.6923
GG{ALLLC	chr3:100428670-100428988(+)$1	318	73	81	20.1538
fffffccc	chr6:43745469-43745712(+)$1	243	57	65	16.3846
gggg[===	chr7:1474538-1474785(-)$1	247	148	156	16.6923
dJJJJJJJ	chr7:100479927-100480179(+)$1	252	42	50	16.8461
hDDDD{DD	chr11:66384506-66384784(+)$1	278	41	49	16.8461
DDDFFFFF	chr7:5569356-5569623(-)$1	267	90	98	15.8461
b[bb!!bb	chr1:245026262-245026521(-)$1	259	158	166	20.1538
77777a]c	chrX:70586272-70586623(+)$1	351	76	84	16.6923
bb]iiiii	chr2:97535375-97535637(-)$1	262	113	121	15.9999
[bb&&&&&	chr5:154136430-154136705(+)$1	275	88	96	20.1538
]a]eeeee	chrX:41193692-41193942(+)$1	250	117	125	20.1538
ggggg]cc	chr6:32942491-32942749(+)$1	258	71	79	16.3076
ppppppbb	chr2:178077543-178077800(+)$1	257	46	54	20.1538
ee4444bb	chr5:43483682-43484015(-)$1	333	123	131	16.3846
CCGGGGGG	chr9:86594450-86594731(-)$1	281	82	90	20.1538
ccc22ccc	chr16:2809954-2810226(+)$1	272	112	120	20.1538
d[a[bb##	chr7:139056195-139056448(+)$1	253	111	119	20.1538
"""dddd[	chr19:2270024-2270227(+)$1	203	29	37	20.1538
hhhhhhss	chr19:10406926-10407190(+)$1	264	26	34	16.8461
ffoooooo	chr20:42087426-42087677(+)$1	251	66	74	15.6923
=======f	chr20:42087100-42087354(+)$1	254	90	98	16.8461
nndddd22	chr17:62501631-62501936(-)$1	305	156	164	15.8461
hh$$$$$e	chr19:18682642-18682916(+)$1	274	109	117	15.9999
c"""eeee	chr19:2270116-2270376(+)$1	260	108	116	16.8461
ee22iiii	chr1:32832198-32832472(-)$1	274	109	117	15.8461
EEEE{CCC	chr4:174254766-174255105(-)$1	339	78	86	15.7692
eeeee[cc	chr5:39073971-39074265(-)$1	294	92	100	16.4615
bb"""ggg	chr17:73775409-73775671(-)$1	262	205	213	20.1538
ldddd]cc	chr3:47894658-47894935(-)$1	277	140	148	16.4615
blllbb]a	chr10:71929890-71930169(-)$1	279	20	28	16.3076
ttttttte	chr11:72414344-72414560(-)$1	216	71	79	16.1538
a]a4444a	chr2:97559889-97560189(-)$1	300	40	48	16.6923
^^^^^^^^	chr4:100870965-100871245(-)$1	280	48	56	20.1538
ddddeeee	chr11:62622112-62622344(-)$1	232	96	104	16.4615
DDDggggg	chr20:42087583-42087826(+)$1	243	104	112	15.7692
Ebbmmmmb	chr7:5569522-5569794(-)$1	272	261	269	15.8461
"""fffff	chr21:44527306-44527608(-)$1	302	154	162	20.1538
d55555dd	chr17:26940991-26941300(-)$1	309	56	64	15.6923
DD}EEEEE	chr6:43738480-43738702(+)$1	222	85	93	15.6923
peeeeehh	chr4:71847769-71848022(+)$1	253	110	118	16.8461
hhhhhhhh	chr22:50032850-50033118(-)$1	268	104	112	15.8461
==::::::	chr6:43745707-43745956(+)$1	249	108	116	16.1538
odddd22e	chr4:26859307-26859598(+)$1	291	160	168	16.4615
GGGG{BB{	chr2:132038631-132038895(+)$1	264	21	29	16.6923
]dddd:::	chr7:6066100-6066390(-)$1	290	89	97	15.7692
[ggggggg	chr15:91454233-91454476(+)$1	243	112	120	16.1538
:DDDD{II	chr6:43745896-43746139(+)$1	243	4	12	16.3846
ccnnnnnc	chr17:78311132-78311455(+)$1	323	172	180	15.9999
FFFF}A}C	chr12:123994627-123995021(-)$1	394	306	314	15.6923
:EEEEE}A	chr1:1328454-1328690(-)$1	236	213	221	16.4615
dd]a6666	chr19:11200287-11200582(+)$1	295	246	254	15.5384
ggg]====	chr10:124914102-124914367(+)$1	265	49	57	15.6923
Fbbnnnnn	chr19:10407044-10407264(+)$1	220	205	213	15.8461
IIIIIII{	chr21:40720479-40720712(-)$1	233	39	47	16.8461
[a$$$$$c	chrX:12994441-12994697(+)$1	256	89	97	16.1538

#DB
.((.((((	chr6:43745756-43745983(+)$1	1	59	67	16.1538
.((((((.	chr11:126137840-126138086(-)$1	1	108	116	16.3076
.))..)))	chr15:91455423-91455695(+)$1	1	104	112	15.7692
))))((((	chrX:70761529-70761810(+)$1	1	138	146	16.6923
(...((.(	chr17:74732714-74732970(-)$1	1	58	66	16.8461
...)))))	chr17:66031922-66032178(+)$1	1	105	113	20.1538
(((((.((	chr17:79894570-79894827(-)$1	1	0	8	16.3846
(((.((((	chr1:245026385-245026641(-)$1	1	7	15	20.1538
(((....(	chr1:59247156-59247431(-)$1	1	26	34	20.1538
(((((.((	chr11:568100-568380(-)$1	1	153	161	16.6923
((.(...(	chr3:100428670-100428988(+)$1	1	73	81	20.1538
))))))))	chr6:43745469-43745712(+)$1	1	57	65	16.3846
((((.(((	chr7:1474538-1474785(-)$1	1	148	156	16.6923
)(((((((	chr7:100479927-100480179(+)$1	1	42	50	16.8461
)((((.((	chr11:66384506-66384784(+)$1	1	41	49	16.8461
((((((((	chr7:5569356-5569623(-)$1	1	90	98	15.8461
(.((..((	chr1:245026262-245026521(-)$1	1	158	166	20.1538
.....).)	chrX:70586272-70586623(+)$1	1	76	84	16.6923
)).)))))	chr2:97535375-97535637(-)$1	1	113	121	15.9999
.((.....	chr5:154136430-154136705(+)$1	1	88	96	20.1538
.).)))))	chrX:41193692-41193942(+)$1	1	117	125	20.1538
))))).))	chr6:32942491-32942749(+)$1	1	71	79	16.3076
......))	chr2:178077543-178077800(+)$1	1	46	54	20.1538
))....))	chr5:43483682-43484015(-)$1	1	123	131	16.3846
((((((((	chr9:86594450-86594731(-)$1	1	82	90	20.1538
)))..)))	chr16:2809954-2810226(+)$1	1	112	120	20.1538
(.(.((..	chr7:139056195-139056448(+)$1	1	111	119	20.1538
...((((.	chr19:2270024-2270227(+)$1	1	29	37	20.1538
((((((..	chr19:10406926-10407190(+)$1	1	26	34	16.8461
((......	chr20:42087426-42087677(+)$1	1	66	74	15.6923
))))))))	chr20:42087100-42087354(+)$1	1	90	98	16.8461
..))))..	chr17:62501631-62501936(-)$1	1	156	164	15.8461
((.....(	chr19:18682642-18682916(+)$1	1	109	117	15.9999
(...((((	chr19:2270116-2270376(+)$1	1	108	116	16.8461
))..))))	chr1:32832198-32832472(-)$1	1	109	117	15.8461
((((.(((	chr4:174254766-174255105(-)$1	1	78	86	15.7692
(((((.((	chr5:39073971-39074265(-)$1	1	92	100	16.4615
((...(((	chr17:73775409-73775671(-)$1	1	205	213	20.1538
.)))).))	chr3:47894658-47894935(-)$1	1	140	148	16.4615
(...)).)	chr10:71929890-71930169(-)$1	1	20	28	16.3076
.......)	chr11:72414344-72414560(-)$1	1	71	79	16.1538
).)....)	chr2:97559889-97560189(-)$1	1	40	48	16.6923
........	chr4:100870965-100871245(-)$1	1	48	56	20.1538
((((((((	chr11:62622112-62622344(-)$1	1	96	104	16.4615
((((((((	chr20:42087583-42087826(+)$1	1	104	112	15.7692
)((....)	chr7:5569522-5569794(-)$1	1	261	269	15.8461
...(((((	chr21:44527306-44527608(-)$1	1	154	162	20.1538
).....))	chr17:26940991-26941300(-)$1	1	56	64	15.6923
)).)))))	chr6:43738480-43738702(+)$1	1	85	93	15.6923
.)))))((	chr4:71847769-71848022(+)$1	1	110	118	16.8461
((((((((	chr22:50032850-50033118(-)$1	1	104	112	15.8461
))......	chr6:43745707-43745956(+)$1	1	108	116	16.1538
.))))..)	chr4:26859307-26859598(+)$1	1	160	168	16.4615
((((.((.	chr2:132038631-132038895(+)$1	1	21	29	16.6923
.))))...	chr7:6066100-6066390(-)$1	1	89	97	15.7692
.(((((((	chr15:91454233-91454476(+)$1	1	112	120	16.1538
.((((.((	chr6:43745896-43746139(+)$1	1	4	12	16.3846
((.....)	chr17:78311132-78311455(+)$1	1	172	180	15.9999
)))).).)	chr12:123994627-123995021(-)$1	1	306	314	15.6923
.))))).)	chr1:1328454-1328690(-)$1	1	213	221	16.4615
)).)....	chr19:11200287-11200582(+)$1	1	246	254	15.5384
))).))))	chr10:124914102-124914367(+)$1	1	49	57	15.6923
)((.....	chr19:10407044-10407264(+)$1	1	205	213	15.8461
(((((((.	chr21:40720479-40720712(-)$1	1	39	47	16.8461
.(.....(	chrX:12994441-12994697(+)$1	1	89	97	16.1538

#PSSM
G : 0.69	g : 0.12	U : 0.07	A : 0.06	C : 0.04	
G : 0.75	g : 0.12	U : 0.07	C : 0.04	
G : 0.81	g : 0.09	C : 0.04	a : 0.01	A : 0.01	U : 0.01	
G : 0.83	g : 0.10	A : 0.04	U : 0.01	
G : 0.79	g : 0.10	U : 0.04	A : 0.03	C : 0.01	
A : 0.72	C : 0.10	U : 0.06	a : 0.06	u : 0.03	c : 0.01	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	

#score	1114.923076923075
#seq	65
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_UTR_m1_run1.nuc.txt

#NT
GCCUGGGG	chr3:5229660-5229924(+)$1	264	15	23	19.7352
GUCUGGGG	chr3:183911522-183911856(+)$1	334	173	181	15.6911
GCCUGGGG	chr9:130268320-130268663(-)$1	343	138	146	19.7352
GCCUGGGA	chr1:156712713-156712993(-)$1	280	57	65	16.0588
GCCUAGGG	chr15:64980428-64980711(-)$1	283	90	98	15.2499
GCCAGGGG	chr19:3490755-3491093(-)$1	338	25	33	16.3529
GCCCGGGG	chr19:49965807-49966109(+)$1	302	136	144	16.4999
GGCUGGGG	chr10:134595837-134596098(+)$1	261	104	112	15.7647
gccggggg	chr1:1284440-1284728(-)$1	288	51	59	16.6470
gccggggG	chr16:30537744-30538048(-)$1	304	10	18	16.6470
GCCAGGGG	chr19:3490893-3491205(-)$1	312	22	30	16.3529
GCCGGGGG	chr22:37904542-37904781(-)$1	239	103	111	16.6470
GCCUGGGC	chr16:30535264-30535534(-)$1	270	116	124	15.9117
GCCGGGGG	chr19:1271351-1271567(+)$1	216	57	65	16.6470
GCCUGGGG	chr12:120533294-120533601(-)$1	307	296	304	19.7352
GCCUGGGU	chr20:34220689-34220945(-)$1	256	2	10	15.7647
GCCUGGGG	chr11:47488374-47488637(-)$1	263	107	115	19.7352
GCCUGGGC	chr2:231743011-231743324(+)$1	313	80	88	15.9117
GCGUGGGG	chr6:33739935-33740203(-)$1	268	115	123	15.0294
GCCUGGGG	chr2:219139146-219139400(-)$1	254	108	116	19.7352
GCCUGAGG	chr14:24114361-24114581(+)$1	220	144	152	15.3235
GGCUGGGG	chr10:92980420-92980695(+)$1	275	187	195	15.7647
GGCUGGGG	chr1:154530974-154531230(-)$1	256	15	23	15.7647
GCCUGGGG	chr9:130648511-130648776(-)$1	265	53	61	19.7352
GCCCGGGG	chr19:2426746-2426996(-)$1	250	131	139	16.4999
GGCUGGGG	chr1:161736021-161736332(+)$1	311	140	148	15.7647
GCCUGGGG	chr19:13260863-13261197(-)$1	334	188	196	19.7352
CCCUGGGG	chr10:120900425-120900687(-)$1	262	152	160	15.4705
GCCGGGGG	chr1:178994929-178995246(+)$1	317	73	81	16.6470
GCGUGGGG	chr9:6645333-6645600(-)$1	267	119	127	15.0294
GCCUGGGG	chr8:38853775-38854106(-)$1	331	100	108	19.7352
GCCUGGGA	chr19:19039953-19040254(-)$1	301	33	41	16.0588
GCCUGGGA	chr6:24719859-24720105(-)$1	246	93	101	16.0588
gcccgggg	chr19:3094434-3094762(+)$1	328	82	90	16.4999
GCCUUGGG	chr2:241570420-241570682(+)$1	262	5	13	15.1764
GCCUGGAG	chr9:137024440-137024680(+)$1	240	85	93	14.8823
GCCUCGGG	chr3:52290623-52290898(-)$1	275	33	41	15.2499
GUCUGGGG	chr14:24114564-24114806(+)$1	242	127	135	15.6911
GGCUGGGG	chr21:46934152-46934502(-)$1	350	120	128	15.7647
GCCUGGGG	chr19:55998131-55998434(+)$1	303	87	95	19.7352
GCCUGGGU	chr8:28925987-28926303(-)$1	316	62	70	15.7647
GCCUGGGA	chr1:44456461-44456867(+)$1	406	210	218	16.0588
gcccgggg	chr12:118498748-118499037(-)$1	289	131	139	16.4999
GCCAGGGG	chr2:64109518-64109771(+)$1	253	105	113	16.3529
GCCUGAGG	chr16:77232478-77232746(+)$1	268	161	169	15.3235
ACCUGGGG	chr1:16174271-16174572(+)$1	301	112	120	15.3235
GCCUGGGA	chr19:541787-542097(+)$1	310	142	150	16.0588
GUCUGGGG	chr19:973744-973992(+)$1	248	151	159	15.6911
CCCUGGGG	chr9:139687410-139687718(+)$1	308	85	93	15.4705
CCCUGGGG	chr19:4536945-4537229(-)$1	284	96	104	15.4705
GCCUGAGG	chr22:24812582-24812894(+)$1	312	215	223	15.3235
GUCUGGGG	chr14:24114606-24114837(+)$1	231	85	93	15.6911
GCCAGGGG	chr3:179040809-179041109(+)$1	300	68	76	16.3529
gcccgggg	chr3:48699911-48700183(-)$1	272	12	20	16.4999
ACCUGGGG	chr9:117012832-117013044(+)$1	212	193	201	15.3235
gccggggg	chr5:171710833-171711132(-)$1	299	67	75	16.6470
CCCUGGGG	chr16:88874828-88875174(+)$1	346	136	144	15.4705
GCCUCGGG	chr19:8550415-8550749(+)$1	334	125	133	15.2499
GCCUGUGG	chr9:80944234-80944503(+)$1	269	64	72	15.1764
GCCUGGGG	chr9:130268026-130268363(-)$1	337	157	165	19.7352
GCCCGGGG	chr19:2426725-2426946(-)$1	221	81	89	16.4999
GCCUAGGG	chr7:77166694-77166972(+)$1	278	11	19	15.2499
GCCUGGGA	chr1:156712631-156712909(-)$1	278	100	108	16.0588
GCCUGCGG	chr11:66615936-66616250(-)$1	314	23	31	15.1764
GCCUGGGC	chr17:80348085-80348362(-)$1	277	131	139	15.9117
gccggggg	chr18:29077974-29078289(+)$1	315	142	150	16.6470
GCCUGGGC	chr17:80348205-80348461(-)$1	256	230	238	15.9117

#otherMatches

#Struct PSSM
eee]bbcc	chr2:120934802-120935141(+)$1	339	125	133	16.6470
hhhhhhho	chr3:5229660-5229924(+)$1	264	15	23	19.7352
"""ggggg	chr3:183911522-183911856(+)$1	334	173	181	15.6911
HHHHLLLG	chr9:130268320-130268663(-)$1	343	138	146	19.7352
========	chr1:156712713-156712993(-)$1	280	57	65	16.0588
EEEE{DDD	chr15:64980428-64980711(-)$1	283	90	98	15.2499
mbb22a]b	chr19:3490755-3491093(-)$1	338	25	33	16.3529
eeeellle	chr19:49965807-49966109(+)$1	302	136	144	16.4999
ddddnnnn	chr10:134595837-134596098(+)$1	261	104	112	15.7647
[ccc[bb[	chr1:1284440-1284728(-)$1	288	51	59	16.6470
DDD{AEEE	chr16:30537744-30538048(-)$1	304	10	18	16.6470
%bb!!bb$	chr19:3490893-3491205(-)$1	312	22	30	16.3529
ccceeeee	chr22:37904542-37904781(-)$1	239	103	111	16.6470
offffff]	chr16:30535264-30535534(-)$1	270	116	124	15.9117
cccggggg	chr19:1271351-1271567(+)$1	216	57	65	16.6470
HHAYYBB:	chr12:120533294-120533601(-)$1	307	296	304	19.7352
bbeeeee[	chr20:34220689-34220945(-)$1	256	2	10	15.7647
!!hhhhhh	chr11:47488374-47488637(-)$1	263	107	115	19.7352
ccc####i	chr2:231743011-231743324(+)$1	313	80	88	15.9117
cc]dddd]	chr6:33739935-33740203(-)$1	268	115	123	15.0294
dddd!!cc	chr2:219139146-219139400(-)$1	254	108	116	19.7352
fff]cccf	chr14:24114361-24114581(+)$1	220	144	152	15.3235
eeeee444	chr10:92980420-92980695(+)$1	275	187	195	15.7647
{DDDDBB{	chr1:154530974-154531230(-)$1	256	15	23	15.7647
iiiiEEEE	chr9:130648511-130648776(-)$1	265	53	61	19.7352
ca!!eeee	chr19:2426746-2426996(-)$1	250	131	139	16.4999
fffppppp	chr1:161736021-161736332(+)$1	311	140	148	15.7647
=======6	chr19:13260863-13261197(-)$1	334	188	196	19.7352
dddd[bbm	chr10:120900425-120900687(-)$1	262	152	160	15.4705
[ccc####	chr1:178994929-178995246(+)$1	317	73	81	16.6470
B}DDDD}J	chr9:6645333-6645600(-)$1	267	119	127	15.0294
iiiiiiii	chr8:38853775-38854106(-)$1	331	100	108	19.7352
gggg]bb:	chr19:19039953-19040254(-)$1	301	33	41	16.0588
ffffffdd	chr6:24719859-24720105(-)$1	246	93	101	16.0588
hhhhqqqq	chr19:3094434-3094762(+)$1	328	82	90	16.4999
IIIIIIII	chr2:241570420-241570682(+)$1	262	5	13	15.1764
GGGGOOOO	chr9:137024440-137024680(+)$1	240	85	93	14.8823
BB{IIIII	chr3:52290623-52290898(-)$1	275	33	41	15.2499
hhhheeee	chr14:24114564-24114806(+)$1	242	127	135	15.6911
fffffff]	chr21:46934152-46934502(-)$1	350	120	128	15.7647
ee22eeee	chr19:55998131-55998434(+)$1	303	87	95	19.7352
ddd!!===	chr8:28925987-28926303(-)$1	316	62	70	15.7647
ccc!!bb[	chr1:44456461-44456867(+)$1	406	210	218	16.0588
hh[ccc[d	chr12:118498748-118499037(-)$1	289	131	139	16.4999
DDKKFFFF	chr2:64109518-64109771(+)$1	253	105	113	16.3529
dggggggg	chr16:77232478-77232746(+)$1	268	161	169	15.3235
]cccGGGG	chr1:16174271-16174572(+)$1	301	112	120	15.3235
gggggggl	chr19:541787-542097(+)$1	310	142	150	16.0588
ddd:DDDD	chr19:973744-973992(+)$1	248	151	159	15.6911
ddd!!hhh	chr9:139687410-139687718(+)$1	308	85	93	15.4705
hhhhhhhh	chr19:4536945-4537229(-)$1	284	96	104	15.4705
CC}BB}HH	chr22:24812582-24812894(+)$1	312	215	223	15.3235
CLLLJJJJ	chr14:24114606-24114837(+)$1	231	85	93	15.6911
ggglllgg	chr3:179040809-179041109(+)$1	300	68	76	16.3529
{DDDD{BB	chr3:48699911-48700183(-)$1	272	12	20	16.4999
iiGGGGGG	chr9:117012832-117013044(+)$1	212	193	201	15.3235
acccffff	chr5:171710833-171711132(-)$1	299	67	75	16.6470
ggg$$$$$	chr16:88874828-88875174(+)$1	346	136	144	15.4705
ffffeeee	chr19:8550415-8550749(+)$1	334	125	133	15.2499
gg[cccpp	chr9:80944234-80944503(+)$1	269	64	72	15.1764
eeeeeggg	chr9:130268026-130268363(-)$1	337	157	165	19.7352
ca!!eeee	chr19:2426725-2426946(-)$1	221	81	89	16.4999
hhhlllhh	chr7:77166694-77166972(+)$1	278	11	19	15.2499
D::DDDD{	chr1:156712631-156712909(-)$1	278	100	108	16.0588
ffflllff	chr11:66615936-66616250(-)$1	314	23	31	15.1764
oooodddd	chr17:80348085-80348362(-)$1	277	131	139	15.9117
IIIIIIII	chr18:29077974-29078289(+)$1	315	142	150	16.6470
gggggg]b	chr17:80348205-80348461(-)$1	256	230	238	15.9117

#DB
))).))))	chr2:120934802-120935141(+)$1	1	125	133	16.6470
(((((((.	chr3:5229660-5229924(+)$1	1	15	23	19.7352
...(((((	chr3:183911522-183911856(+)$1	1	173	181	15.6911
((((...(	chr9:130268320-130268663(-)$1	1	138	146	19.7352
))))))))	chr1:156712713-156712993(-)$1	1	57	65	16.0588
((((.(((	chr15:64980428-64980711(-)$1	1	90	98	15.2499
.))..).)	chr19:3490755-3491093(-)$1	1	25	33	16.3529
((((...)	chr19:49965807-49966109(+)$1	1	136	144	16.4999
((((....	chr10:134595837-134596098(+)$1	1	104	112	15.7647
.(((.((.	chr1:1284440-1284728(-)$1	1	51	59	16.6470
(((.((((	chr16:30537744-30538048(-)$1	1	10	18	16.6470
.((..((.	chr19:3490893-3491205(-)$1	1	22	30	16.3529
))))))))	chr22:37904542-37904781(-)$1	1	103	111	16.6470
.)))))).	chr16:30535264-30535534(-)$1	1	116	124	15.9117
((((((((	chr19:1271351-1271567(+)$1	1	57	65	16.6470
)))..)).	chr12:120533294-120533601(-)$1	1	296	304	19.7352
(((((((.	chr20:34220689-34220945(-)$1	1	2	10	15.7647
..((((((	chr11:47488374-47488637(-)$1	1	107	115	19.7352
(((....(	chr2:231743011-231743324(+)$1	1	80	88	15.9117
)).)))).	chr6:33739935-33740203(-)$1	1	115	123	15.0294
((((..((	chr2:219139146-219139400(-)$1	1	108	116	19.7352
))).))))	chr14:24114361-24114581(+)$1	1	144	152	15.3235
)))))...	chr10:92980420-92980695(+)$1	1	187	195	15.7647
.((((((.	chr1:154530974-154531230(-)$1	1	15	23	15.7647
))))((((	chr9:130648511-130648776(-)$1	1	53	61	19.7352
((..((((	chr19:2426746-2426996(-)$1	1	131	139	16.4999
(((.....	chr1:161736021-161736332(+)$1	1	140	148	15.7647
))))))).	chr19:13260863-13261197(-)$1	1	188	196	19.7352
((((.((.	chr10:120900425-120900687(-)$1	1	152	160	15.4705
.(((....	chr1:178994929-178995246(+)$1	1	73	81	16.6470
).)))).)	chr9:6645333-6645600(-)$1	1	119	127	15.0294
))))))))	chr8:38853775-38854106(-)$1	1	100	108	19.7352
)))).)).	chr19:19039953-19040254(-)$1	1	33	41	16.0588
))))))))	chr6:24719859-24720105(-)$1	1	93	101	16.0588
((((....	chr19:3094434-3094762(+)$1	1	82	90	16.4999
((((((((	chr2:241570420-241570682(+)$1	1	5	13	15.1764
((((....	chr9:137024440-137024680(+)$1	1	85	93	14.8823
((.(((((	chr3:52290623-52290898(-)$1	1	33	41	15.2499
))))))))	chr14:24114564-24114806(+)$1	1	127	135	15.6911
))))))).	chr21:46934152-46934502(-)$1	1	120	128	15.7647
))..))))	chr19:55998131-55998434(+)$1	1	87	95	19.7352
(((..(((	chr8:28925987-28926303(-)$1	1	62	70	15.7647
(((..((.	chr1:44456461-44456867(+)$1	1	210	218	16.0588
((.(((.(	chr12:118498748-118499037(-)$1	1	131	139	16.4999
((..((((	chr2:64109518-64109771(+)$1	1	105	113	16.3529
))))))))	chr16:77232478-77232746(+)$1	1	161	169	15.3235
.)))))))	chr1:16174271-16174572(+)$1	1	112	120	15.3235
(((((((.	chr19:541787-542097(+)$1	1	142	150	16.0588
))).))))	chr19:973744-973992(+)$1	1	151	159	15.6911
(((..(((	chr9:139687410-139687718(+)$1	1	85	93	15.4705
((((((((	chr19:4536945-4537229(-)$1	1	96	104	15.4705
)).)).))	chr22:24812582-24812894(+)$1	1	215	223	15.3235
(...((((	chr14:24114606-24114837(+)$1	1	85	93	15.6911
(((...))	chr3:179040809-179041109(+)$1	1	68	76	16.3529
.((((.((	chr3:48699911-48700183(-)$1	1	12	20	16.4999
))))))))	chr9:117012832-117013044(+)$1	1	193	201	15.3235
((((((((	chr5:171710833-171711132(-)$1	1	67	75	16.6470
(((.....	chr16:88874828-88875174(+)$1	1	136	144	15.4705
))))))))	chr19:8550415-8550749(+)$1	1	125	133	15.2499
((.(((..	chr9:80944234-80944503(+)$1	1	64	72	15.1764
)))))(((	chr9:130268026-130268363(-)$1	1	157	165	19.7352
((..((((	chr19:2426725-2426946(-)$1	1	81	89	16.4999
(((...))	chr7:77166694-77166972(+)$1	1	11	19	15.2499
)..((((.	chr1:156712631-156712909(-)$1	1	100	108	16.0588
(((...))	chr11:66615936-66616250(-)$1	1	23	31	15.1764
....))))	chr17:80348085-80348362(-)$1	1	131	139	15.9117
))))))))	chr18:29077974-29078289(+)$1	1	142	150	16.6470
)))))).)	chr17:80348205-80348461(-)$1	1	230	238	15.9117

#PSSM
G : 0.80	g : 0.10	C : 0.05	A : 0.02	
C : 0.76	c : 0.10	G : 0.07	U : 0.05	
C : 0.86	c : 0.10	G : 0.02	
U : 0.73	G : 0.05	A : 0.05	g : 0.05	C : 0.04	c : 0.04	
G : 0.82	g : 0.10	A : 0.02	C : 0.02	U : 0.01	
G : 0.82	g : 0.10	A : 0.04	U : 0.01	C : 0.01	
G : 0.88	g : 0.10	A : 0.01	
G : 0.73	A : 0.08	g : 0.08	C : 0.05	U : 0.02	

#score	1118.0294117647045
#seq	68
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_UTR_m2_run2.nuc.txt

#NT
CCUCCCCGU	chr7:75046337-75046605(-)$1	268	136	145	13.3157
CCUUCCCUC	chr11:62392687-62392935(-)$1	248	70	79	14.8070
CCUGCCCCG	chr11:64532026-64532256(-)$1	230	205	214	12.9649
CCUCCCCAG	chr17:38153979-38154249(+)$1	270	20	29	16.1228
UCACCCCUG	chr5:151122386-151122621(-)$1	235	5	14	11.7368
CCUACCCUU	chr6:30032496-30032752(+)$1	256	134	143	13.4035
CCUCCUCUC	chr17:49245581-49245793(+)$1	212	3	12	13.4912
UUUCCCCUG	chr10:7791291-7791505(+)$1	214	46	55	11.9122
CCUCCCAUC	chr6:32136810-32137059(-)$1	249	25	34	13.4035
CCUGCCCUG	chr10:73576659-73576883(-)$1	224	91	100	16.2105
CCUCCCCAC	chr9:139687175-139687420(+)$1	245	191	200	14.7192
CCUCCCCUU	chr3:127291906-127292231(-)$1	325	66	75	17.0000
CCUCCCCCC	chr12:56552382-56552596(+)$1	214	162	171	14.6315
CCUGCACUG	chr2:27873341-27873628(+)$1	287	141	150	11.6491
CCUCUCCUC	chr1:153604151-153604396(+)$1	245	4	13	13.5789
ACUCCCCUC	chr6:44221951-44222270(-)$1	319	172	181	14.3684
CCUCCCCAA	chr17:39979090-39979349(+)$1	259	10	19	13.5789
ACUGCCCUG	chr1:1375785-1376006(+)$1	221	204	213	12.7017
CCUCCCCAG	chr11:118916028-118916285(-)$1	257	191	200	16.1228
CCUCCCCCC	chr22:24237171-24237377(+)$1	206	42	51	14.6315
CCUCCCCAA	chr1:156707042-156707308(-)$1	266	137	146	13.5789
CCUCCCCUU	chr9:130925787-130926120(+)$1	333	258	267	17.0000
CCUUCCCUG	chr1:32799698-32799981(-)$1	283	55	64	16.2105
CCUUCCCUG	chr1:201350316-201350582(-)$1	266	122	131	16.2105
CCUCUCCUU	chr17:4701212-4701521(+)$1	309	71	80	12.7017
CAUCCCCUG	chr1:43392603-43392822(-)$1	219	81	90	14.7192
CCUCCCCUG	chr12:57924117-57924392(-)$1	275	72	81	19.2807
UCUGCCCUG	chr17:80014416-80014640(+)$1	224	76	85	13.2280
UCUCCCCUC	chr17:73842343-73842637(-)$1	294	114	123	14.8947
UCUCUCCUG	chr9:131909922-131910190(+)$1	268	93	102	12.0000
CCUCCCCUC	chr1:6520183-6520524(+)$1	341	122	131	17.8771
CCUUCCCUG	chr16:90071217-90071494(-)$1	277	30	39	16.2105
CCUCCCCCC	chr6:31625781-31625990(+)$1	209	43	52	14.6315
GCUCCCCUG	chr6:34741333-34741578(+)$1	245	121	130	15.6842
CCUCCCCUC	chr8:145067368-145067643(+)$1	275	41	50	17.8771
CCUCCCCCA	chr19:13033474-13033740(-)$1	266	27	36	13.4912
CCUGCCCUC	chr22:45959011-45959271(+)$1	260	181	190	14.8070
CCUUCCCUG	chr12:57606407-57606626(+)$1	219	13	22	16.2105
CCUCCCGUG	chr9:96021200-96021516(+)$1	316	105	114	14.8947
UCUCCCCUC	chr16:18801530-18801735(-)$1	205	65	74	14.8947
UCUCCCCCG	chr19:3053207-3053448(-)$1	241	74	83	13.0526
UUUCCCCUG	chr2:74588320-74588621(-)$1	301	3	12	11.9122
CCUCCCCAG	chr7:100867131-100867393(+)$1	262	38	47	16.1228
ccucccuug	chr11:6634158-6634412(-)$1	254	212	221	14.8947
ACUCCCCUC	chr3:53259730-53259969(-)$1	239	0	9	14.3684
CCUGCCCUG	chrX:70444425-70444712(+)$1	287	21	30	16.2105
CCUCCUCUC	chr14:24114619-24114836(+)$1	217	164	173	13.4912
ccucccuuu	chrX:132669703-132669949(-)$1	246	110	119	12.6140
CCUCCUCUG	chr22:41972970-41973255(-)$1	285	21	30	14.8947
CCUCCCGUG	chr17:79974739-79975023(+)$1	284	31	40	14.8947
GCUUCCCUG	chr2:242757713-242757964(+)$1	251	4	13	12.6140
UCUCUCCUG	chr14:77935450-77935729(+)$1	279	187	196	12.0000
CCACCCCUG	chr20:23614304-23614524(-)$1	220	35	44	14.7192
CUUCCCCUG	chr3:51737926-51738243(+)$1	317	223	232	14.8947
CCUCCCCAG	chr1:27661929-27662206(+)$1	277	237	246	16.1228
CCUUCCCUG	chr6:41757394-41757613(+)$1	219	28	37	16.2105

#otherMatches

#Struct PSSM
DDDDCCCBB	chr19:49464017-49464247(+)$1	230	200	209	14.6315
acccccctt	chr7:75046337-75046605(-)$1	268	136	145	13.3157
ddd333ccc	chr11:62392687-62392935(-)$1	248	70	79	14.8070
eeeee:::F	chr11:64532026-64532256(-)$1	230	205	214	12.9649
CCC{CCC:c	chr17:38153979-38154249(+)$1	270	20	29	16.1228
HHHHHH:cc	chr5:151122386-151122621(-)$1	235	5	14	11.7368
d))))))))	chr6:30032496-30032752(+)$1	256	134	143	13.4035
:CCC{FFFF	chr17:49245581-49245793(+)$1	212	3	12	13.4912
ffffffddd	chr10:7791291-7791505(+)$1	214	46	55	11.9122
ncccccc44	chr6:32136810-32137059(-)$1	249	25	34	13.4035
&&&&ddddm	chr10:73576659-73576883(-)$1	224	91	100	16.2105
eeetttttt	chr9:139687175-139687420(+)$1	245	191	200	14.7192
ooeeeee::	chr3:127291906-127292231(-)$1	325	66	75	17.0000
eeee::FFF	chr12:56552382-56552596(+)$1	214	162	171	14.6315
DDDDA{EEE	chr2:27873341-27873628(+)$1	287	141	150	11.6491
e[bb[ccc#	chr1:153604151-153604396(+)$1	245	4	13	13.5789
]bbffffff	chr6:44221951-44222270(-)$1	319	172	181	14.3684
iiiiccc""	chr17:39979090-39979349(+)$1	259	10	19	13.5789
DYYA}FFFF	chr1:1375785-1376006(+)$1	221	204	213	12.7017
88888bbcc	chr11:118916028-118916285(-)$1	257	191	200	16.1228
7777777dd	chr22:24237171-24237377(+)$1	206	42	51	14.6315
eeFFFFFF}	chr1:156707042-156707308(-)$1	266	137	146	13.5789
JJJJJJJYY	chr9:130925787-130926120(+)$1	333	258	267	17.0000
:::::::::	chr1:32799698-32799981(-)$1	283	55	64	16.2105
5========	chr1:201350316-201350582(-)$1	266	122	131	16.2105
eeee]eeee	chr17:4701212-4701521(+)$1	309	71	80	12.7017
e22eeeee:	chr1:43392603-43392822(-)$1	219	81	90	14.7192
ee:bbaccc	chr12:57924117-57924392(-)$1	275	72	81	19.2807
hhhhheeee	chr17:80014416-80014640(+)$1	224	76	85	13.2280
ddppppppp	chr17:73842343-73842637(-)$1	294	114	123	14.8947
hhhhhh444	chr9:131909922-131910190(+)$1	268	93	102	12.0000
[arrrrrrr	chr1:6520183-6520524(+)$1	341	122	131	17.8771
qqqqqgggg	chr16:90071217-90071494(-)$1	277	30	39	16.2105
:::::::::	chr6:31625781-31625990(+)$1	209	43	52	14.6315
:ggggggg[	chr6:34741333-34741578(+)$1	245	121	130	15.6842
bb^^^^^^^	chr8:145067368-145067643(+)$1	275	41	50	17.8771
ccc!!eeee	chr19:13033474-13033740(-)$1	266	27	36	13.4912
"""ddddmm	chr22:45959011-45959271(+)$1	260	181	190	14.8070
accc[bb[c	chr12:57606407-57606626(+)$1	219	13	22	16.2105
dnnnnnddd	chr9:96021200-96021516(+)$1	316	105	114	14.8947
777777bb2	chr16:18801530-18801735(-)$1	205	65	74	14.8947
ccooooooc	chr19:3053207-3053448(-)$1	241	74	83	13.0526
:::::::::	chr2:74588320-74588621(-)$1	301	3	12	11.9122
e666666bb	chr7:100867131-100867393(+)$1	262	38	47	16.1228
ee22bb22e	chr11:6634158-6634412(-)$1	254	212	221	14.8947
::EEEEE{D	chr3:53259730-53259969(-)$1	239	0	9	14.3684
ccooooooc	chrX:70444425-70444712(+)$1	287	21	30	16.2105
JJJJ:::::	chr14:24114619-24114836(+)$1	217	164	173	13.4912
:::::::::	chrX:132669703-132669949(-)$1	246	110	119	12.6140
qqqqqqqqe	chr22:41972970-41973255(-)$1	285	21	30	14.8947
i$$$$$ddd	chr17:79974739-79975023(+)$1	284	31	40	14.8947
ddd$$$$$e	chr2:242757713-242757964(+)$1	251	4	13	12.6140
:::::DDDD	chr14:77935450-77935729(+)$1	279	187	196	12.0000
xxxxxxxxb	chr20:23614304-23614524(-)$1	220	35	44	14.7192
C}GGGGGGG	chr3:51737926-51738243(+)$1	317	223	232	14.8947
ccccceeee	chr1:27661929-27662206(+)$1	277	237	246	16.1228
::::::ddd	chr6:41757394-41757613(+)$1	219	28	37	16.2105

#DB
)))))))))	chr19:49464017-49464247(+)$1	1	200	209	14.6315
(((((((..	chr7:75046337-75046605(-)$1	1	136	145	13.3157
)))...)))	chr11:62392687-62392935(-)$1	1	70	79	14.8070
)))))...)	chr11:64532026-64532256(-)$1	1	205	214	12.9649
(((.(((.(	chr17:38153979-38154249(+)$1	1	20	29	16.1228
((((((.((	chr5:151122386-151122621(-)$1	1	5	14	11.7368
(........	chr6:30032496-30032752(+)$1	1	134	143	13.4035
.(((.((((	chr17:49245581-49245793(+)$1	1	3	12	13.4912
))))))(((	chr10:7791291-7791505(+)$1	1	46	55	11.9122
.))))))..	chr6:32136810-32137059(-)$1	1	25	34	13.4035
....((((.	chr10:73576659-73576883(-)$1	1	91	100	16.2105
(((......	chr9:139687175-139687420(+)$1	1	191	200	14.7192
..)))))..	chr3:127291906-127292231(-)$1	1	66	75	17.0000
))))..)))	chr12:56552382-56552596(+)$1	1	162	171	14.6315
(((((.(((	chr2:27873341-27873628(+)$1	1	141	150	11.6491
(.((.(((.	chr1:153604151-153604396(+)$1	1	4	13	13.5789
.))))))))	chr6:44221951-44222270(-)$1	1	172	181	14.3684
(((((((..	chr17:39979090-39979349(+)$1	1	10	19	13.5789
)..).))))	chr1:1375785-1376006(+)$1	1	204	213	12.7017
.....))))	chr11:118916028-118916285(-)$1	1	191	200	16.1228
.......))	chr22:24237171-24237377(+)$1	1	42	51	14.6315
)))))))).	chr1:156707042-156707308(-)$1	1	137	146	13.5789
)))))))..	chr9:130925787-130926120(+)$1	1	258	267	17.0000
.........	chr1:32799698-32799981(-)$1	1	55	64	16.2105
.))))))))	chr1:201350316-201350582(-)$1	1	122	131	16.2105
)))).))))	chr17:4701212-4701521(+)$1	1	71	80	12.7017
)..))))).	chr1:43392603-43392822(-)$1	1	81	90	14.7192
)).((((((	chr12:57924117-57924392(-)$1	1	72	81	19.2807
)))))))))	chr17:80014416-80014640(+)$1	1	76	85	13.2280
((.......	chr17:73842343-73842637(-)$1	1	114	123	14.8947
))))))...	chr9:131909922-131910190(+)$1	1	93	102	12.0000
.(.......	chr1:6520183-6520524(+)$1	1	122	131	17.8771
.....))))	chr16:90071217-90071494(-)$1	1	30	39	16.2105
.........	chr6:31625781-31625990(+)$1	1	43	52	14.6315
.(((((((.	chr6:34741333-34741578(+)$1	1	121	130	15.6842
((.......	chr8:145067368-145067643(+)$1	1	41	50	17.8771
(((..((((	chr19:13033474-13033740(-)$1	1	27	36	13.4912
...((((..	chr22:45959011-45959271(+)$1	1	181	190	14.8070
((((.((.(	chr12:57606407-57606626(+)$1	1	13	22	16.2105
(.....)))	chr9:96021200-96021516(+)$1	1	105	114	14.8947
......)).	chr16:18801530-18801735(-)$1	1	65	74	14.8947
((......)	chr19:3053207-3053448(-)$1	1	74	83	13.0526
.........	chr2:74588320-74588621(-)$1	1	3	12	11.9122
)......))	chr7:100867131-100867393(+)$1	1	38	47	16.1228
))..))..)	chr11:6634158-6634412(-)$1	1	212	221	14.8947
..(((((.(	chr3:53259730-53259969(-)$1	1	0	9	14.3684
((......)	chrX:70444425-70444712(+)$1	1	21	30	16.2105
)))).....	chr14:24114619-24114836(+)$1	1	164	173	13.4912
.........	chrX:132669703-132669949(-)$1	1	110	119	12.6140
........)	chr22:41972970-41973255(-)$1	1	21	30	14.8947
(.....(((	chr17:79974739-79975023(+)$1	1	31	40	14.8947
(((.....(	chr2:242757713-242757964(+)$1	1	4	13	12.6140
.....))))	chr14:77935450-77935729(+)$1	1	187	196	12.0000
........)	chr20:23614304-23614524(-)$1	1	35	44	14.7192
).)))))))	chr3:51737926-51738243(+)$1	1	223	232	14.8947
)))))((((	chr1:27661929-27662206(+)$1	1	237	246	16.1228
......(((	chr6:41757394-41757613(+)$1	1	28	37	16.2105

#PSSM
C : 0.70	U : 0.15	c : 0.05	A : 0.05	G : 0.03	
C : 0.87	c : 0.05	U : 0.05	A : 0.01	
U : 0.91	A : 0.03	u : 0.03	g : 0.01	
C : 0.68	U : 0.12	G : 0.12	c : 0.05	A : 0.01	
C : 0.87	U : 0.07	c : 0.05	
C : 0.87	c : 0.05	U : 0.05	A : 0.01	
C : 0.89	G : 0.03	u : 0.03	c : 0.01	A : 0.01	
U : 0.70	A : 0.12	C : 0.10	u : 0.05	G : 0.01	
G : 0.52	C : 0.28	U : 0.08	A : 0.05	g : 0.03	u : 0.01	

#score	830.4035087719311
#seq	57
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_UTR_m3_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
:::::::::::EEEEEBBFFFFFF{CCCeeeeemmmmeeeeebb####gggggggbbnnnnnbb]ggggggg4444bb:::::::::cccooooooccc::::::::CCC}FFFFFF}BBffffffccc[dddd[eeeee[aooooooa]eeeeeddddccc333ffffff::::::::::::::::gggggggpppppppggggggg:::::::::::::::gggggggmmmmgggggggEE	chr16:24802489-24802749(+)$1	260	3	246	729.0000

#DB
...........(((((((((((((.((((((((....)))))((....(((((((((.....)).)))))))....)).........(((......)))........))).)))))).))(((((((((.((((.(((((.(......).))))))))))))...))))))................(((((((.......)))))))...............(((((((....)))))))))	chr16:24802489-24802749(+)$1	1	3	246	729.0000

#PSSM
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	

#score	729.0
#seq	1
#width	243
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_CDS_m3_run2.nuc.txt

#NT
GAAGAAGC	chr2:54856435-54856662(+)$1	227	43	51	16.2448
GAAGAAGC	chr9:139102944-139103282(-)$1	338	138	146	16.2448
GAAGAAGA	chr17:74085151-74085382(-)$1	231	99	107	20.3265
GAAGAAGG	chr12:58112693-58112976(+)$1	283	111	119	15.9387
GAAGAAGA	chr4:1920015-1920317(+)$1	302	247	255	20.3265
GAAGAAGA	chr20:2638712-2638928(+)$1	216	188	196	20.3265
GAGGAAGA	chr1:27269091-27269364(+)$1	273	65	73	16.3469
GAAGAAAA	chr17:80210272-80210577(-)$1	305	221	229	17.0612
gaagaaga	chr6:35838021-35838330(-)$1	309	82	90	20.3265
GAAGAAGA	chr14:24679479-24679740(-)$1	261	126	134	20.3265
GAACAAGA	chr19:57326056-57326287(-)$1	231	33	41	15.8367
GAAGAAAA	chr6:7580051-7580331(+)$1	280	182	190	17.0612
GCAGAAGA	chr21:34918536-34918784(+)$1	248	90	98	15.6326
GAAGACGA	chr2:102493364-102493628(+)$1	264	184	192	15.9387
GAAGAAUA	chr1:97189018-97189251(+)$1	233	58	66	16.6530
GAACAAGA	chr1:19421411-19421619(-)$1	208	112	120	15.8367
gaggaaga	chr9:100777598-100777866(+)$1	268	75	83	16.3469
GAAGAAAA	chr10:79796938-79797163(+)$1	225	27	35	17.0612
GAAGAAGA	chr7:133041024-133041424(+)$1	400	162	170	20.3265
CAAGAAGA	chr12:6692356-6692593(-)$1	237	145	153	16.1428
GAAGAAUA	chr11:71719613-71719886(-)$1	273	258	266	16.6530
AAAGAAGA	chr16:69687127-69687422(+)$1	295	41	49	16.0408
GAAGAAGC	chr2:216974016-216974280(+)$1	264	109	117	16.2448
gaagaaga	chr3:184039649-184039949(+)$1	300	94	102	20.3265
GAGGAAGA	chr19:8531119-8531365(+)$1	246	225	233	16.3469
GGAGAAGA	chr16:67863880-67864222(-)$1	342	323	331	15.6326
GAAGCAGA	chr6:7581058-7581280(+)$1	222	71	79	15.7346
GAAGAAGC	chr15:93467495-93467795(+)$1	300	68	76	16.2448
GAAGAAGA	chr11:47752904-47753190(-)$1	286	150	158	20.3265
GAGGAAGA	chr17:37360759-37360983(+)$1	224	121	129	16.3469
GAAGAAAA	chr2:232322261-232322500(-)$1	239	38	46	17.0612
CAAGAAGA	chr2:232326482-232326720(-)$1	238	138	146	16.1428
GAAGAAGA	chr19:11551965-11552231(+)$1	266	158	166	20.3265
GAAGAAGA	chr16:24802661-24802912(+)$1	251	242	250	20.3265
GAAGAUGA	chr19:5626318-5626600(+)$1	282	103	111	15.9387
gaaaaaga	chr7:134632329-134632621(+)$1	292	103	111	15.7346
GAAGACGA	chr5:138264902-138265135(+)$1	233	107	115	15.9387
GAAGAAUA	chr15:44085147-44085385(+)$1	238	53	61	16.6530
GAAGAUGA	chr12:76449716-76449949(-)$1	233	35	43	15.9387
GAGGAAGA	chr7:73021850-73022079(-)$1	229	87	95	16.3469
GAAGAAGA	chr8:17725960-17726174(-)$1	214	86	94	20.3265
CAAGAAGA	chrX:70517196-70517411(+)$1	215	44	52	16.1428
gaagaaga	chr11:35684935-35685304(+)$1	369	99	107	20.3265
gaagaaaa	chr20:17640781-17641007(-)$1	226	28	36	17.0612
GAAGAAAA	chr5:55251811-55252160(-)$1	349	30	38	17.0612
gaagaaaa	chr20:17640751-17640981(-)$1	230	2	10	17.0612
AAAGAAGA	chr17:1268115-1268438(-)$1	323	226	234	16.0408
GAAGAAGA	chr3:48665812-48666074(-)$1	262	132	140	20.3265

#otherMatches

#Struct PSSM
ee::====	chr16:74955751-74955974(-)$1	223	116	124	15.7346
b22bbccc	chr2:54856435-54856662(+)$1	227	43	51	16.2448
_____FFF	chr9:139102944-139103282(-)$1	338	138	146	16.2448
ddddnnnn	chr17:74085151-74085382(-)$1	231	99	107	20.3265
c55555dd	chr12:58112693-58112976(+)$1	283	111	119	15.9387
bppppppp	chr4:1920015-1920317(+)$1	302	247	255	20.3265
:::::CCC	chr20:2638712-2638928(+)$1	216	188	196	20.3265
DDDD{BBK	chr1:27269091-27269364(+)$1	273	65	73	16.3469
FFFFF:::	chr17:80210272-80210577(-)$1	305	221	229	17.0612
::::::::	chr6:35838021-35838330(-)$1	309	82	90	20.3265
""dddd[f	chr14:24679479-24679740(-)$1	261	126	134	20.3265
EEE:gggg	chr19:57326056-57326287(-)$1	231	33	41	15.8367
ggggqqqq	chr6:7580051-7580331(+)$1	280	182	190	17.0612
eeeee:::	chr21:34918536-34918784(+)$1	248	90	98	15.6326
qdddd]cc	chr2:102493364-102493628(+)$1	264	184	192	15.9387
c$$$$$dd	chr1:97189018-97189251(+)$1	233	58	66	16.6530
nnnnnbb3	chr1:19421411-19421619(-)$1	208	112	120	15.8367
::::::::	chr9:100777598-100777866(+)$1	268	75	83	16.3469
gggccc##	chr10:79796938-79797163(+)$1	225	27	35	17.0612
\\\JJJJJ	chr7:133041024-133041424(+)$1	400	162	170	20.3265
ggg:::EE	chr12:6692356-6692593(-)$1	237	145	153	16.1428
mhhhhhhh	chr11:71719613-71719886(-)$1	273	258	266	16.6530
HHHH::DD	chr16:69687127-69687422(+)$1	295	41	49	16.0408
DKKEEEEE	chr2:216974016-216974280(+)$1	264	109	117	16.2448
eeee]bb2	chr3:184039649-184039949(+)$1	300	94	102	20.3265
4444ccc]	chr19:8531119-8531365(+)$1	246	225	233	16.3469
dddd::::	chr16:67863880-67864222(-)$1	342	323	331	15.6326
NNNNCCCK	chr6:7581058-7581280(+)$1	222	71	79	15.7346
dd####dd	chr15:93467495-93467795(+)$1	300	68	76	16.2448
CCCKKBB:	chr11:47752904-47753190(-)$1	286	150	158	20.3265
nncccddd	chr17:37360759-37360983(+)$1	224	121	129	16.3469
e:::::::	chr2:232322261-232322500(-)$1	239	38	46	17.0612
d22bb]gg	chr2:232326482-232326720(-)$1	238	138	146	16.1428
d&&&&&&&	chr19:11551965-11552231(+)$1	266	158	166	20.3265
::::::::	chr16:24802661-24802912(+)$1	251	242	250	20.3265
ggggg]ee	chr19:5626318-5626600(+)$1	282	103	111	15.9387
::::::::	chr7:134632329-134632621(+)$1	292	103	111	15.7346
E:::::::	chr5:138264902-138265135(+)$1	233	107	115	15.9387
ffffff]b	chr15:44085147-44085385(+)$1	238	53	61	16.6530
HHHHH{CC	chr12:76449716-76449949(-)$1	233	35	43	15.9387
b]bb::::	chr7:73021850-73022079(-)$1	229	87	95	16.3469
$$$$eeee	chr8:17725960-17726174(-)$1	214	86	94	20.3265
KFFFFFFL	chrX:70517196-70517411(+)$1	215	44	52	16.1428
^^^^^^^^	chr11:35684935-35685304(+)$1	369	99	107	20.3265
c:::::::	chr20:17640781-17641007(-)$1	226	28	36	17.0612
BBOOOOOO	chr5:55251811-55252160(-)$1	349	30	38	17.0612
::::::::	chr20:17640751-17640981(-)$1	230	2	10	17.0612
^^^bb999	chr17:1268115-1268438(-)$1	323	226	234	16.0408
bb]dddd:	chr3:48665812-48666074(-)$1	262	132	140	20.3265

#DB
))..((((	chr16:74955751-74955974(-)$1	1	116	124	15.7346
)..)))))	chr2:54856435-54856662(+)$1	1	43	51	16.2448
.....)))	chr9:139102944-139103282(-)$1	1	138	146	16.2448
((((....	chr17:74085151-74085382(-)$1	1	99	107	20.3265
).....))	chr12:58112693-58112976(+)$1	1	111	119	15.9387
(.......	chr4:1920015-1920317(+)$1	1	247	255	20.3265
.....)))	chr20:2638712-2638928(+)$1	1	188	196	20.3265
((((.((.	chr1:27269091-27269364(+)$1	1	65	73	16.3469
)))))...	chr17:80210272-80210577(-)$1	1	221	229	17.0612
........	chr6:35838021-35838330(-)$1	1	82	90	20.3265
..((((.(	chr14:24679479-24679740(-)$1	1	126	134	20.3265
(((.((((	chr19:57326056-57326287(-)$1	1	33	41	15.8367
((((....	chr6:7580051-7580331(+)$1	1	182	190	17.0612
)))))...	chr21:34918536-34918784(+)$1	1	90	98	15.6326
.)))).))	chr2:102493364-102493628(+)$1	1	184	192	15.9387
(.....((	chr1:97189018-97189251(+)$1	1	58	66	16.6530
.....)).	chr1:19421411-19421619(-)$1	1	112	120	15.8367
........	chr9:100777598-100777866(+)$1	1	75	83	16.3469
)))(((..	chr10:79796938-79797163(+)$1	1	27	35	17.0612
...)))))	chr7:133041024-133041424(+)$1	1	162	170	20.3265
)))...((	chr12:6692356-6692593(-)$1	1	145	153	16.1428
.)))))))	chr11:71719613-71719886(-)$1	1	258	266	16.6530
((((..((	chr16:69687127-69687422(+)$1	1	41	49	16.0408
(..(((((	chr2:216974016-216974280(+)$1	1	109	117	16.2448
)))).)).	chr3:184039649-184039949(+)$1	1	94	102	20.3265
....))).	chr19:8531119-8531365(+)$1	1	225	233	16.3469
))))....	chr16:67863880-67864222(-)$1	1	323	331	15.6326
....(((.	chr6:7581058-7581280(+)$1	1	71	79	15.7346
((....((	chr15:93467495-93467795(+)$1	1	68	76	16.2448
(((..((.	chr11:47752904-47753190(-)$1	1	150	158	20.3265
..))))))	chr17:37360759-37360983(+)$1	1	121	129	16.3469
).......	chr2:232322261-232322500(-)$1	1	38	46	17.0612
)..)).))	chr2:232326482-232326720(-)$1	1	138	146	16.1428
(.......	chr19:11551965-11552231(+)$1	1	158	166	20.3265
........	chr16:24802661-24802912(+)$1	1	242	250	20.3265
))))).))	chr19:5626318-5626600(+)$1	1	103	111	15.9387
........	chr7:134632329-134632621(+)$1	1	103	111	15.7346
(.......	chr5:138264902-138265135(+)$1	1	107	115	15.9387
)))))).)	chr15:44085147-44085385(+)$1	1	53	61	16.6530
(((((.((	chr12:76449716-76449949(-)$1	1	35	43	15.9387
).))....	chr7:73021850-73022079(-)$1	1	87	95	16.3469
....((((	chr8:17725960-17726174(-)$1	1	86	94	20.3265
.((((((.	chrX:70517196-70517411(+)$1	1	44	52	16.1428
........	chr11:35684935-35685304(+)$1	1	99	107	20.3265
).......	chr20:17640781-17641007(-)$1	1	28	36	17.0612
((......	chr5:55251811-55252160(-)$1	1	30	38	17.0612
........	chr20:17640751-17640981(-)$1	1	2	10	17.0612
...))...	chr17:1268115-1268438(-)$1	1	226	234	16.0408
)).)))).	chr3:48665812-48666074(-)$1	1	132	140	20.3265

#PSSM
G : 0.75	g : 0.14	C : 0.06	A : 0.04	
A : 0.81	a : 0.14	C : 0.02	G : 0.02	
A : 0.77	a : 0.12	G : 0.08	g : 0.02	
G : 0.81	g : 0.12	C : 0.04	a : 0.02	
A : 0.81	a : 0.14	C : 0.04	
A : 0.77	a : 0.14	C : 0.04	U : 0.04	
G : 0.69	A : 0.10	g : 0.10	U : 0.06	a : 0.04	
A : 0.75	a : 0.14	C : 0.08	G : 0.02	

#score	850.6938775510212
#seq	49
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_UTR_m2_run2.nuc.txt

#NT
GGGGACAGGCAAAGGUGGCUUAAUGAAGAGCAAGGGGUUUUUAGAUGACAUGGUGGUAGUGUUAUUAAUAAACUCUUUUUCCUCUUUAUGCAGCUGGUUCCUGGAGGAGAAGGACCUGAAGUGUGAAUGAGUUUCCUUGACUUACACUAGAUUUUGUUUUGGCUUAUAAUGACAAGAAAAUGGAAUUUUUUUUCCCACUUUCUAAUGUUUAAAUCCCAUAAAGCUAAGUUUCCCGUUAAAGGGAAGUGCUUUGAAGAUGUGUACCCAUUUUUGUAAGUUAAUCAUGAUUAUCCUGGAAAAAGAAGAAAAGAGCUUCUUCUUUGCAGAUGAAAAUA	chr7:32526662-32527002(-)$1	340	4	339	410.0000

#otherMatches

#Struct PSSM
gggggnnnnngggggggIIIIIIIIIBB{FFFFFFiiiiiiiii"""ddddeeeee[dddd"""ddddllldddd0000000000dddd]eeeee]dddd22iiiiiiiii::gggggggddddqqqqqqqqdddd]ggggggg:::::gggggggqqqqqqqqggggggg:ccccccooooooccc]ccc::============ccc"""ccc!!a!!bb[bb[bb[ffffff"""ggggggg[ccciiiiiiiii####bboooooobbiiiiiiiii0000000000cccggggggg333ffffff]bb]bb]bb22a22ccc22ccc]===	chr6:33161603-33161984(-)$1	381	6	341	410.0000
EEECCCKKIIIIIIIIIccc!!hhhhhhhh[iiiiiiiii"""hhhhhhhhppppppphhhhhhhh333iiiiiiiii333hhhhhhhh22ccc:ccc[cccqqqqqqqqcccccc:::eeeee####eeeeennnnneeeeeeeeee:eeeee[ffffff(((((((((ddddeeeee!!ddddoooooodddd333eeeee22dddd999999999ffffff]eeeeeddddoooooodddd:ddddtttttttttttdddd:IIIIIIIIIYYCCC@@@@@@@@@@@EEEEE}A:iiiiiiiiiooooooiiiiiiiii:::::::::::::	chr7:32526662-32527002(-)$1	340	4	339	410.0000

#DB
(((((.....)))))))(((((((((((.(((((((((((((((...(((((((((.((((...((((...))))..........)))).))))).))))..)))))))))..(((((((((((........)))).))))))).....(((((((........))))))).((((((......))).)))..(((((((((((((((...(((..(..((.((.((.((((((...(((((((.((((((((((((....((......)))))))))))..........))))))))))...)))))).)).)).))..)..)))..))).)))	chr6:33161603-33161984(-)$1	1	6	341	410.0000
((((((..((((((((((((..((((((((.(((((((((...((((((((.......))))))))...)))))))))...))))))))..))).(((.(((........))))))...(((((....(((((.....)))))))))).(((((.((((((.........(((((((((..((((......))))...)))))..)))).........)))))).)))))((((......)))).((((...........)))).)))))))))..)))...........))))).).(((((((((......))))))))).............	chr7:32526662-32527002(-)$1	1	4	339	410.0000

#PSSM
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
C : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	

#score	820.0
#seq	2
#width	335
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_transcript_m3_run1.nuc.txt

#NT
cugg	chr7:111928873-111929110(+)$1	237	18	22	11.9999
CUGG	chr1:564775-564979(-)$1	204	185	189	11.9999
CUGG	chr2:97535309-97535554(-)$1	245	46	50	11.9999
CUGG	chr1:569798-570099(-)$1	301	30	34	11.9999
CUGG	chr19:34288071-34288332(+)$1	261	20	24	11.9999
CUGG	chr19:4037224-4037474(+)$1	250	2	6	11.9999
CUGG	chr19:34879665-34879907(+)$1	242	15	19	11.9999
cugg	chr11:47380022-47380303(-)$1	281	166	170	11.9999
CUGG	chr8:1792434-1792707(+)$1	273	15	19	11.9999
CUGG	chr7:932578-932820(+)$1	242	8	12	11.9999
cugg	chr4:56963489-56963703(+)$1	214	133	137	11.9999
CUGG	chr19:1410000-1410265(+)$1	265	26	30	11.9999
cugg	chr1:12642635-12642919(-)$1	284	107	111	11.9999
CUGG	chr12:123994660-123994985(-)$1	325	104	108	11.9999
cugg	chr19:10407089-10407336(+)$1	247	99	103	11.9999
CUGG	chr5:43290991-43291285(-)$1	294	132	136	11.9999
CUGG	chr2:61764458-61764677(-)$1	219	162	166	11.9999
CUGG	chr5:180668721-180668947(-)$1	226	59	63	11.9999
CUGG	chr5:1099393-1099669(-)$1	276	4	8	11.9999
CUGG	chr16:89041012-89041286(-)$1	274	81	85	11.9999
cugg	chr20:29519335-29519599(-)$1	264	91	95	11.9999
cugg	chr6:153741534-153741749(+)$1	215	105	109	11.9999
CUGG	chrM:7246-7454(+)$1	208	131	135	11.9999
CUGG	chr19:1877967-1878232(-)$1	265	123	127	11.9999
cugg	chr14:107092635-107092848(+)$1	213	108	112	11.9999
cugg	chr19:45981755-45981976(-)$1	221	52	56	11.9999
CUGG	chr22:50029057-50029283(-)$1	226	187	191	11.9999
cUGG	chr3:128211661-128211906(+)$1	245	121	125	11.9999
CUGG	chr1:40840028-40840297(+)$1	269	9	13	11.9999
CUGG	chr16:88961914-88962156(-)$1	242	22	26	11.9999
CUGG	chr19:34883328-34883590(+)$1	262	26	30	11.9999
CUGG	chr16:88959377-88959637(-)$1	260	24	28	11.9999
CUGG	chr1:3655688-3655991(-)$1	303	28	32	11.9999
CUGG	chrM:10172-10406(+)$1	234	190	194	11.9999
cugg	chr19:4035408-4035635(+)$1	227	93	97	11.9999
CUGG	chrM:14177-14400(-)$1	223	192	196	11.9999
CUGG	chr2:232573552-232573812(+)$1	260	227	231	11.9999
CUGG	chr16:87771836-87772117(-)$1	281	257	261	11.9999
CUGG	chr16:89020532-89020805(-)$1	273	54	58	11.9999
CUGG	chr9:96435320-96435616(+)$1	296	10	14	11.9999
cugg	chr6:165823007-165823222(+)$1	215	1	5	11.9999
CUGG	chrM:10206-10416(+)$1	210	156	160	11.9999
CUGG	chr4:1238692-1238955(-)$1	263	48	52	11.9999
CUGG	chr4:110745069-110745290(+)$1	221	172	176	11.9999
CUGG	chr19:49605894-49606150(+)$1	256	31	35	11.9999
CUGG	chr22:50018622-50018883(-)$1	261	26	30	11.9999
CUGG	chr5:179248579-179248804(+)$1	225	85	89	11.9999
CUGG	chrM:14203-14422(-)$1	219	214	218	11.9999
CUGG	chr8:1788912-1789226(+)$1	314	77	81	11.9999
CUGG	chr3:128210071-128210334(+)$1	263	120	124	11.9999
cugg	chr12:133272015-133272270(+)$1	255	6	10	11.9999
CUGG	chr16:89022607-89022854(-)$1	247	6	10	11.9999
CUGG	chr17:62501975-62502235(-)$1	260	69	73	11.9999
CUGG	chr22:50021868-50022107(-)$1	239	6	10	11.9999
CUGG	chr21:45945114-45945411(+)$1	297	168	172	11.9999
CUGG	chr22:49975090-49975348(-)$1	258	195	199	11.9999
CUGG	chr7:5569890-5570159(-)$1	269	90	94	11.9999
CUGG	chr19:47733678-47733928(-)$1	250	10	14	11.9999
CUGG	chr16:89555648-89555898(-)$1	250	97	101	11.9999
CUGG	chr19:34882464-34882724(+)$1	260	47	51	11.9999
CUGG	chr16:88561029-88561296(+)$1	267	104	108	11.9999
cugg	chr8:9629516-9629787(+)$1	271	254	258	11.9999
CUGG	chrM:14159-14377(-)$1	218	169	173	11.9999
cugg	chr16:88586272-88586549(+)$1	277	46	50	11.9999
cugg	chr4:56963503-56963730(+)$1	227	119	123	11.9999
CUGG	chr8:143363393-143363729(-)$1	336	31	35	11.9999
CUGG	chr11:639274-639550(+)$1	276	30	34	11.9999
cugg	chr8:1779120-1779385(+)$1	265	50	54	11.9999
cugg	chr8:1779904-1780213(+)$1	309	17	21	11.9999
cugg	chr6:86352569-86352817(-)$1	248	23	27	11.9999
CUGG	chr19:47732769-47733014(-)$1	245	1	5	11.9999
cugg	chr7:57710568-57710825(-)$1	257	140	144	11.9999
CUGG	chr22:50030421-50030683(-)$1	262	5	9	11.9999
CUGG	chr10:35759136-35759421(+)$1	285	168	172	11.9999
CUGG	chr1:564779-565014(-)$1	235	220	224	11.9999
CUGG	chr11:611844-612083(+)$1	239	106	110	11.9999
cUGG	chr3:128211706-128211991(+)$1	285	76	80	11.9999
CUGG	chr1:1283640-1283915(-)$1	275	17	21	11.9999
CUGG	chr22:49974948-49975203(-)$1	255	50	54	11.9999

#otherMatches

#Struct PSSM
gggm	chr5:651667-651926(+)$1	259	22	26	11.9999
[bb#	chr7:111928873-111929110(+)$1	237	18	22	11.9999
FFFF	chr1:564775-564979(-)$1	204	185	189	11.9999
GGKK	chr2:97535309-97535554(-)$1	245	46	50	11.9999
ccc[	chr1:569798-570099(-)$1	301	30	34	11.9999
GG{B	chr19:34288071-34288332(+)$1	261	20	24	11.9999
ffff	chr19:4037224-4037474(+)$1	250	2	6	11.9999
ffff	chr19:34879665-34879907(+)$1	242	15	19	11.9999
iiii	chr11:47380022-47380303(-)$1	281	166	170	11.9999
E{CC	chr8:1792434-1792707(+)$1	273	15	19	11.9999
ggg[	chr7:932578-932820(+)$1	242	8	12	11.9999
3eee	chr4:56963489-56963703(+)$1	214	133	137	11.9999
ffff	chr19:1410000-1410265(+)$1	265	26	30	11.9999
ccc#	chr1:12642635-12642919(-)$1	284	107	111	11.9999
3ccc	chr12:123994660-123994985(-)$1	325	104	108	11.9999
bb]b	chr19:10407089-10407336(+)$1	247	99	103	11.9999
CC{C	chr5:43290991-43291285(-)$1	294	132	136	11.9999
eess	chr2:61764458-61764677(-)$1	219	162	166	11.9999
==""	chr5:180668721-180668947(-)$1	226	59	63	11.9999
DDMM	chr5:1099393-1099669(-)$1	276	4	8	11.9999
cccc	chr16:89041012-89041286(-)$1	274	81	85	11.9999
cddd	chr20:29519335-29519599(-)$1	264	91	95	11.9999
ddd]	chr6:153741534-153741749(+)$1	215	105	109	11.9999
oeee	chrM:7246-7454(+)$1	208	131	135	11.9999
]fff	chr19:1877967-1878232(-)$1	265	123	127	11.9999
dddd	chr14:107092635-107092848(+)$1	213	108	112	11.9999
ffff	chr19:45981755-45981976(-)$1	221	52	56	11.9999
e]cc	chr22:50029057-50029283(-)$1	226	187	191	11.9999
dddd	chr3:128211661-128211906(+)$1	245	121	125	11.9999
llff	chr1:40840028-40840297(+)$1	269	9	13	11.9999
d[ee	chr16:88961914-88962156(-)$1	242	22	26	11.9999
JJJJ	chr19:34883328-34883590(+)$1	262	26	30	11.9999
DDD:	chr16:88959377-88959637(-)$1	260	24	28	11.9999
gg[g	chr1:3655688-3655991(-)$1	303	28	32	11.9999
22cc	chrM:10172-10406(+)$1	234	190	194	11.9999
dd]a	chr19:4035408-4035635(+)$1	227	93	97	11.9999
====	chrM:14177-14400(-)$1	223	192	196	11.9999
gggg	chr2:232573552-232573812(+)$1	260	227	231	11.9999
B:dd	chr16:87771836-87772117(-)$1	281	257	261	11.9999
ffff	chr16:89020532-89020805(-)$1	273	54	58	11.9999
cccC	chr9:96435320-96435616(+)$1	296	10	14	11.9999
BKKH	chr6:165823007-165823222(+)$1	215	1	5	11.9999
22cc	chrM:10206-10416(+)$1	210	156	160	11.9999
CHHH	chr4:1238692-1238955(-)$1	263	48	52	11.9999
hh44	chr4:110745069-110745290(+)$1	221	172	176	11.9999
eeee	chr19:49605894-49606150(+)$1	256	31	35	11.9999
cccp	chr22:50018622-50018883(-)$1	261	26	30	11.9999
{GGG	chr5:179248579-179248804(+)$1	225	85	89	11.9999
::::	chrM:14203-14422(-)$1	219	214	218	11.9999
GGGG	chr8:1788912-1789226(+)$1	314	77	81	11.9999
JJJJ	chr3:128210071-128210334(+)$1	263	120	124	11.9999
GGGG	chr12:133272015-133272270(+)$1	255	6	10	11.9999
FFdd	chr16:89022607-89022854(-)$1	247	6	10	11.9999
mfff	chr17:62501975-62502235(-)$1	260	69	73	11.9999
DDDD	chr22:50021868-50022107(-)$1	239	6	10	11.9999
eee[	chr21:45945114-45945411(+)$1	297	168	172	11.9999
rrrr	chr22:49975090-49975348(-)$1	258	195	199	11.9999
cccn	chr7:5569890-5570159(-)$1	269	90	94	11.9999
g[ee	chr19:47733678-47733928(-)$1	250	10	14	11.9999
ddd'	chr16:89555648-89555898(-)$1	250	97	101	11.9999
c[bb	chr19:34882464-34882724(+)$1	260	47	51	11.9999
eebb	chr16:88561029-88561296(+)$1	267	104	108	11.9999
ccrr	chr8:9629516-9629787(+)$1	271	254	258	11.9999
====	chrM:14159-14377(-)$1	218	169	173	11.9999
cc[a	chr16:88586272-88586549(+)$1	277	46	50	11.9999
ddd]	chr4:56963503-56963730(+)$1	227	119	123	11.9999
cccf	chr8:143363393-143363729(-)$1	336	31	35	11.9999
$$dd	chr11:639274-639550(+)$1	276	30	34	11.9999
DDMM	chr8:1779120-1779385(+)$1	265	50	54	11.9999
GGGM	chr8:1779904-1780213(+)$1	309	17	21	11.9999
GGGK	chr6:86352569-86352817(-)$1	248	23	27	11.9999
ffff	chr19:47732769-47733014(-)$1	245	1	5	11.9999
5555	chr7:57710568-57710825(-)$1	257	140	144	11.9999
gggg	chr22:50030421-50030683(-)$1	262	5	9	11.9999
[bb!	chr10:35759136-35759421(+)$1	285	168	172	11.9999
}CCC	chr1:564779-565014(-)$1	235	220	224	11.9999
!!cc	chr11:611844-612083(+)$1	239	106	110	11.9999
dddx	chr3:128211706-128211991(+)$1	285	76	80	11.9999
KKII	chr1:1283640-1283915(-)$1	275	17	21	11.9999
DEEE	chr22:49974948-49975203(-)$1	255	50	54	11.9999

#DB
(((.	chr5:651667-651926(+)$1	1	22	26	11.9999
.((.	chr7:111928873-111929110(+)$1	1	18	22	11.9999
))))	chr1:564775-564979(-)$1	1	185	189	11.9999
((..	chr2:97535309-97535554(-)$1	1	46	50	11.9999
(((.	chr1:569798-570099(-)$1	1	30	34	11.9999
((.(	chr19:34288071-34288332(+)$1	1	20	24	11.9999
((((	chr19:4037224-4037474(+)$1	1	2	6	11.9999
))))	chr19:34879665-34879907(+)$1	1	15	19	11.9999
))))	chr11:47380022-47380303(-)$1	1	166	170	11.9999
(.((	chr8:1792434-1792707(+)$1	1	15	19	11.9999
(((.	chr7:932578-932820(+)$1	1	8	12	11.9999
.)))	chr4:56963489-56963703(+)$1	1	133	137	11.9999
((((	chr19:1410000-1410265(+)$1	1	26	30	11.9999
(((.	chr1:12642635-12642919(-)$1	1	107	111	11.9999
.)))	chr12:123994660-123994985(-)$1	1	104	108	11.9999
)).)	chr19:10407089-10407336(+)$1	1	99	103	11.9999
((.(	chr5:43290991-43291285(-)$1	1	132	136	11.9999
((..	chr2:61764458-61764677(-)$1	1	162	166	11.9999
((..	chr5:180668721-180668947(-)$1	1	59	63	11.9999
((..	chr5:1099393-1099669(-)$1	1	4	8	11.9999
)))(	chr16:89041012-89041286(-)$1	1	81	85	11.9999
))))	chr20:29519335-29519599(-)$1	1	91	95	11.9999
))).	chr6:153741534-153741749(+)$1	1	105	109	11.9999
.)))	chrM:7246-7454(+)$1	1	131	135	11.9999
.)))	chr19:1877967-1878232(-)$1	1	123	127	11.9999
)(((	chr14:107092635-107092848(+)$1	1	108	112	11.9999
))))	chr19:45981755-45981976(-)$1	1	52	56	11.9999
).))	chr22:50029057-50029283(-)$1	1	187	191	11.9999
((((	chr3:128211661-128211906(+)$1	1	121	125	11.9999
..))	chr1:40840028-40840297(+)$1	1	9	13	11.9999
(.((	chr16:88961914-88962156(-)$1	1	22	26	11.9999
((((	chr19:34883328-34883590(+)$1	1	26	30	11.9999
(((.	chr16:88959377-88959637(-)$1	1	24	28	11.9999
((.(	chr1:3655688-3655991(-)$1	1	28	32	11.9999
..))	chrM:10172-10406(+)$1	1	190	194	11.9999
)).)	chr19:4035408-4035635(+)$1	1	93	97	11.9999
))))	chrM:14177-14400(-)$1	1	192	196	11.9999
((((	chr2:232573552-232573812(+)$1	1	227	231	11.9999
).((	chr16:87771836-87772117(-)$1	1	257	261	11.9999
))))	chr16:89020532-89020805(-)$1	1	54	58	11.9999
)))(	chr9:96435320-96435616(+)$1	1	10	14	11.9999
(..(	chr6:165823007-165823222(+)$1	1	1	5	11.9999
..))	chrM:10206-10416(+)$1	1	156	160	11.9999
((((	chr4:1238692-1238955(-)$1	1	48	52	11.9999
))..	chr4:110745069-110745290(+)$1	1	172	176	11.9999
((((	chr19:49605894-49606150(+)$1	1	31	35	11.9999
(((.	chr22:50018622-50018883(-)$1	1	26	30	11.9999
.(((	chr5:179248579-179248804(+)$1	1	85	89	11.9999
....	chrM:14203-14422(-)$1	1	214	218	11.9999
((((	chr8:1788912-1789226(+)$1	1	77	81	11.9999
((((	chr3:128210071-128210334(+)$1	1	120	124	11.9999
((((	chr12:133272015-133272270(+)$1	1	6	10	11.9999
((((	chr16:89022607-89022854(-)$1	1	6	10	11.9999
.)))	chr17:62501975-62502235(-)$1	1	69	73	11.9999
((((	chr22:50021868-50022107(-)$1	1	6	10	11.9999
(((.	chr21:45945114-45945411(+)$1	1	168	172	11.9999
....	chr22:49975090-49975348(-)$1	1	195	199	11.9999
(((.	chr7:5569890-5570159(-)$1	1	90	94	11.9999
(.((	chr19:47733678-47733928(-)$1	1	10	14	11.9999
(((.	chr16:89555648-89555898(-)$1	1	97	101	11.9999
(.((	chr19:34882464-34882724(+)$1	1	47	51	11.9999
))))	chr16:88561029-88561296(+)$1	1	104	108	11.9999
((..	chr8:9629516-9629787(+)$1	1	254	258	11.9999
))))	chrM:14159-14377(-)$1	1	169	173	11.9999
((.(	chr16:88586272-88586549(+)$1	1	46	50	11.9999
))).	chr4:56963503-56963730(+)$1	1	119	123	11.9999
((((	chr8:143363393-143363729(-)$1	1	31	35	11.9999
..((	chr11:639274-639550(+)$1	1	30	34	11.9999
((..	chr8:1779120-1779385(+)$1	1	50	54	11.9999
(((.	chr8:1779904-1780213(+)$1	1	17	21	11.9999
(((.	chr6:86352569-86352817(-)$1	1	23	27	11.9999
((((	chr19:47732769-47733014(-)$1	1	1	5	11.9999
....	chr7:57710568-57710825(-)$1	1	140	144	11.9999
((((	chr22:50030421-50030683(-)$1	1	5	9	11.9999
.((.	chr10:35759136-35759421(+)$1	1	168	172	11.9999
.)))	chr1:564779-565014(-)$1	1	220	224	11.9999
..((	chr11:611844-612083(+)$1	1	106	110	11.9999
(((.	chr3:128211706-128211991(+)$1	1	76	80	11.9999
..((	chr1:1283640-1283915(-)$1	1	17	21	11.9999
((((	chr22:49974948-49975203(-)$1	1	50	54	11.9999

#PSSM
C : 0.73	c : 0.26	
U : 0.76	u : 0.23	
G : 0.76	g : 0.23	
G : 0.76	g : 0.23	

#score	959.9999999999999
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_CDS_m1_run2.nuc.txt

#NT
GCUG	chr17:28750499-28750755(+)$1	256	85	89	11.9999
GCUG	chr20:32677564-32677798(-)$1	234	218	222	11.9999
GCUG	chr17:65989069-65989330(-)$1	261	10	14	11.9999
GCUG	chr5:149826295-149826507(-)$1	212	48	52	11.9999
GCUG	chr19:59067959-59068198(-)$1	239	179	183	11.9999
GCUG	chr12:7076267-7076480(-)$1	213	178	182	11.9999
GCUG	chr7:103828600-103828893(-)$1	293	111	115	11.9999
gcUG	chr4:2044024-2044246(+)$1	222	7	11	11.9999
GCUG	chr19:1093912-1094140(-)$1	228	42	46	11.9999
GCUG	chr12:58111594-58111841(+)$1	247	125	129	11.9999
GCUG	chr1:32691954-32692162(+)$1	208	102	106	11.9999
GCUG	chr17:42397340-42397569(-)$1	229	108	112	11.9999
GCUG	chr1:15987501-15987761(+)$1	260	17	21	11.9999
GCUG	chr19:33132892-33133120(-)$1	228	96	100	11.9999
GCUG	chr16:24135115-24135337(+)$1	222	162	166	11.9999
GCUG	chr6:30691360-30691577(+)$1	217	126	130	11.9999
GCUG	chrX:53407485-53407729(-)$1	244	13	17	11.9999
GCUG	chr2:27445043-27445251(+)$1	208	34	38	11.9999
GCUG	chr16:89627581-89627785(+)$1	204	33	37	11.9999
GCUG	chr1:220363617-220363831(-)$1	214	132	136	11.9999
GCUG	chr16:87873254-87873527(-)$1	273	59	63	11.9999
GCUG	chr4:109543190-109543413(+)$1	223	41	45	11.9999
GCUG	chr19:14674893-14675110(+)$1	217	76	80	11.9999
GCUG	chr22:20303621-20303842(-)$1	221	10	14	11.9999
GCUG	chr6:33243499-33243707(+)$1	208	179	183	11.9999
GCUG	chr16:29705884-29706086(+)$1	202	79	83	11.9999
GCUG	chr17:40991252-40991497(+)$1	245	1	5	11.9999
GCUG	chr8:48749705-48749922(-)$1	217	5	9	11.9999
GCUG	chr22:38247390-38247597(+)$1	207	120	124	11.9999
GCUG	chr10:103900235-103900501(+)$1	266	1	5	11.9999
GCUG	chr7:56121961-56122187(+)$1	226	201	205	11.9999
GCUG	chr16:2013049-2013251(-)$1	202	109	113	11.9999
GCUG	chr1:12089727-12089946(+)$1	219	19	23	11.9999
GCUG	chr11:118925213-118925440(-)$1	227	115	119	11.9999
GCUG	chr15:34519843-34520141(+)$1	298	51	55	11.9999
GCUG	chr15:77348305-77348561(-)$1	256	60	64	11.9999
GCUG	chr13:98655173-98655390(+)$1	217	7	11	11.9999
GCUG	chr7:98984224-98984444(+)$1	220	201	205	11.9999
GCUG	chr14:102551994-102552196(-)$1	202	5	9	11.9999
GCUG	chr19:47104581-47104794(+)$1	213	36	40	11.9999
GCUG	chr16:89627534-89627737(+)$1	203	23	27	11.9999
GCUG	chr14:20781798-20782017(-)$1	219	99	103	11.9999
GCUG	chr1:116940421-116940631(+)$1	210	39	43	11.9999
GCUG	chr1:36929667-36929873(-)$1	206	20	24	11.9999
GCUG	chr17:37358583-37358789(+)$1	206	17	21	11.9999
GCUG	chr2:42556909-42557155(+)$1	246	219	223	11.9999
GCUG	chr22:24143142-24143364(+)$1	222	139	143	11.9999
GCUG	chr11:67353766-67353986(+)$1	220	60	64	11.9999
GCUG	chr19:39926410-39926620(-)$1	210	102	106	11.9999
GCUG	chr12:56536998-56537213(+)$1	215	55	59	11.9999
GCUG	chr11:71810056-71810288(-)$1	232	3	7	11.9999
GCUG	chr11:71154940-71155169(-)$1	229	3	7	11.9999
GCUG	chr3:52027779-52028004(-)$1	225	110	114	11.9999
GCUG	chr19:18684016-18684233(+)$1	217	206	210	11.9999
GCUG	chr2:85866251-85866487(+)$1	236	154	158	11.9999
GCUG	chr6:27100138-27100352(-)$1	214	125	129	11.9999
GCUG	chr19:39191244-39191449(+)$1	205	87	91	11.9999
GCUG	chr15:41771200-41771456(+)$1	256	112	116	11.9999
GCUG	chr14:102552250-102552477(-)$1	227	78	82	11.9999
GCUG	chr16:1363971-1364197(+)$1	226	175	179	11.9999
GCUG	chr10:72643663-72643883(-)$1	220	1	5	11.9999
GCUG	chr17:34842459-34842730(+)$1	271	32	36	11.9999
GCUG	chr11:64012190-64012395(-)$1	205	13	17	11.9999
GCUG	chr17:75190854-75191094(+)$1	240	60	64	11.9999
GCUG	chr20:32883109-32883331(-)$1	222	62	66	11.9999
GCUG	chr16:58199443-58199668(-)$1	225	70	74	11.9999
GCUG	chr1:11116670-11116901(-)$1	231	25	29	11.9999
GCUG	chr6:160205679-160205954(-)$1	275	109	113	11.9999
GCUG	chr17:27074954-27075164(+)$1	210	30	34	11.9999
GCUG	chr2:27438132-27438343(+)$1	211	5	9	11.9999
GCUG	chr1:229676342-229676571(-)$1	229	75	79	11.9999
GCUG	chr12:123801771-123802002(-)$1	231	21	25	11.9999
GCUG	chr19:1556710-1556964(-)$1	254	42	46	11.9999
GCUG	chr17:7404820-7405028(+)$1	208	50	54	11.9999
GCUG	chr3:57835378-57835644(+)$1	266	105	109	11.9999
GCUG	chr1:182821327-182821567(+)$1	240	15	19	11.9999
GCUG	chr16:69153152-69153413(-)$1	261	246	250	11.9999
GCUG	chr9:77745393-77745636(+)$1	243	173	177	11.9999
GCUG	chr2:242202131-242202389(-)$1	258	161	165	11.9999
GCUG	chr1:36643998-36644242(+)$1	244	23	27	11.9999
GCUG	chr16:2817221-2817430(+)$1	209	76	80	11.9999
GCUG	chr7:56119547-56119778(+)$1	231	50	54	11.9999
GCUG	chr11:118888085-118888308(-)$1	223	164	168	11.9999
GCUG	chr15:30010496-30010750(-)$1	254	62	66	11.9999

#otherMatches

#Struct PSSM
IIII	chr6:90406036-90406247(-)$1	211	15	19	11.9999
GGGG	chr17:28750499-28750755(+)$1	256	85	89	11.9999
cccc	chr20:32677564-32677798(-)$1	234	218	222	11.9999
bb[c	chr17:65989069-65989330(-)$1	261	10	14	11.9999
bb[d	chr5:149826295-149826507(-)$1	212	48	52	11.9999
C:gg	chr19:59067959-59068198(-)$1	239	179	183	11.9999
ffff	chr12:7076267-7076480(-)$1	213	178	182	11.9999
ddss	chr7:103828600-103828893(-)$1	293	111	115	11.9999
[ddd	chr4:2044024-2044246(+)$1	222	7	11	11.9999
ffff	chr19:1093912-1094140(-)$1	228	42	46	11.9999
nccc	chr12:58111594-58111841(+)$1	247	125	129	11.9999
bddd	chr1:32691954-32692162(+)$1	208	102	106	11.9999
d22d	chr17:42397340-42397569(-)$1	229	108	112	11.9999
rddd	chr1:15987501-15987761(+)$1	260	17	21	11.9999
eeee	chr19:33132892-33133120(-)$1	228	96	100	11.9999
dddp	chr16:24135115-24135337(+)$1	222	162	166	11.9999
eeGG	chr6:30691360-30691577(+)$1	217	126	130	11.9999
EEEE	chrX:53407485-53407729(-)$1	244	13	17	11.9999
dddq	chr2:27445043-27445251(+)$1	208	34	38	11.9999
{CCC	chr16:89627581-89627785(+)$1	204	33	37	11.9999
dddd	chr1:220363617-220363831(-)$1	214	132	136	11.9999
oooo	chr16:87873254-87873527(-)$1	273	59	63	11.9999
ea:f	chr4:109543190-109543413(+)$1	223	41	45	11.9999
dddd	chr19:14674893-14675110(+)$1	217	76	80	11.9999
{DDD	chr22:20303621-20303842(-)$1	221	10	14	11.9999
22a]	chr6:33243499-33243707(+)$1	208	179	183	11.9999
iiii	chr16:29705884-29706086(+)$1	202	79	83	11.9999
dddd	chr17:40991252-40991497(+)$1	245	1	5	11.9999
GGGG	chr8:48749705-48749922(-)$1	217	5	9	11.9999
ddd6	chr22:38247390-38247597(+)$1	207	120	124	11.9999
eeee	chr10:103900235-103900501(+)$1	266	1	5	11.9999
[eee	chr7:56121961-56122187(+)$1	226	201	205	11.9999
b::e	chr16:2013049-2013251(-)$1	202	109	113	11.9999
dddd	chr1:12089727-12089946(+)$1	219	19	23	11.9999
bboo	chr11:118925213-118925440(-)$1	227	115	119	11.9999
]bb]	chr15:34519843-34520141(+)$1	298	51	55	11.9999
8888	chr15:77348305-77348561(-)$1	256	60	64	11.9999
BBNN	chr13:98655173-98655390(+)$1	217	7	11	11.9999
eooo	chr7:98984224-98984444(+)$1	220	201	205	11.9999
gggn	chr14:102551994-102552196(-)$1	202	5	9	11.9999
eeee	chr19:47104581-47104794(+)$1	213	36	40	11.9999
bbnn	chr16:89627534-89627737(+)$1	203	23	27	11.9999
ffff	chr14:20781798-20782017(-)$1	219	99	103	11.9999
DDDD	chr1:116940421-116940631(+)$1	210	39	43	11.9999
]bb]	chr1:36929667-36929873(-)$1	206	20	24	11.9999
hhhE	chr17:37358583-37358789(+)$1	206	17	21	11.9999
eeee	chr2:42556909-42557155(+)$1	246	219	223	11.9999
mmdd	chr22:24143142-24143364(+)$1	222	139	143	11.9999
bb]e	chr11:67353766-67353986(+)$1	220	60	64	11.9999
""dd	chr19:39926410-39926620(-)$1	210	102	106	11.9999
tttt	chr12:56536998-56537213(+)$1	215	55	59	11.9999
:::h	chr11:71810056-71810288(-)$1	232	3	7	11.9999
d!!a	chr11:71154940-71155169(-)$1	229	3	7	11.9999
FFFF	chr3:52027779-52028004(-)$1	225	110	114	11.9999
EEEE	chr19:18684016-18684233(+)$1	217	206	210	11.9999
GG}E	chr2:85866251-85866487(+)$1	236	154	158	11.9999
2ccc	chr6:27100138-27100352(-)$1	214	125	129	11.9999
cccd	chr19:39191244-39191449(+)$1	205	87	91	11.9999
]bb2	chr15:41771200-41771456(+)$1	256	112	116	11.9999
eee:	chr14:102552250-102552477(-)$1	227	78	82	11.9999
ccbb	chr16:1363971-1364197(+)$1	226	175	179	11.9999
dddd	chr10:72643663-72643883(-)$1	220	1	5	11.9999
hhhh	chr17:34842459-34842730(+)$1	271	32	36	11.9999
Cddd	chr11:64012190-64012395(-)$1	205	13	17	11.9999
eeee	chr17:75190854-75191094(+)$1	240	60	64	11.9999
cc:e	chr20:32883109-32883331(-)$1	222	62	66	11.9999
eeee	chr16:58199443-58199668(-)$1	225	70	74	11.9999
====	chr1:11116670-11116901(-)$1	231	25	29	11.9999
rrrr	chr6:160205679-160205954(-)$1	275	109	113	11.9999
hhhh	chr17:27074954-27075164(+)$1	210	30	34	11.9999
{DDD	chr2:27438132-27438343(+)$1	211	5	9	11.9999
ddd"	chr1:229676342-229676571(-)$1	229	75	79	11.9999
oooo	chr12:123801771-123802002(-)$1	231	21	25	11.9999
c[bb	chr19:1556710-1556964(-)$1	254	42	46	11.9999
]eee	chr17:7404820-7405028(+)$1	208	50	54	11.9999
ccdd	chr3:57835378-57835644(+)$1	266	105	109	11.9999
cnnn	chr1:182821327-182821567(+)$1	240	15	19	11.9999
eeee	chr16:69153152-69153413(-)$1	261	246	250	11.9999
fffG	chr9:77745393-77745636(+)$1	243	173	177	11.9999
ddHH	chr2:242202131-242202389(-)$1	258	161	165	11.9999
dddc	chr1:36643998-36644242(+)$1	244	23	27	11.9999
ff::	chr16:2817221-2817430(+)$1	209	76	80	11.9999
HH::	chr7:56119547-56119778(+)$1	231	50	54	11.9999
mmmm	chr11:118888085-118888308(-)$1	223	164	168	11.9999
ffff	chr15:30010496-30010750(-)$1	254	62	66	11.9999

#DB
((((	chr6:90406036-90406247(-)$1	1	15	19	11.9999
((((	chr17:28750499-28750755(+)$1	1	85	89	11.9999
))))	chr20:32677564-32677798(-)$1	1	218	222	11.9999
((.(	chr17:65989069-65989330(-)$1	1	10	14	11.9999
((.(	chr5:149826295-149826507(-)$1	1	48	52	11.9999
).((	chr19:59067959-59068198(-)$1	1	179	183	11.9999
))))	chr12:7076267-7076480(-)$1	1	178	182	11.9999
((..	chr7:103828600-103828893(-)$1	1	111	115	11.9999
.(((	chr4:2044024-2044246(+)$1	1	7	11	11.9999
((((	chr19:1093912-1094140(-)$1	1	42	46	11.9999
.)))	chr12:58111594-58111841(+)$1	1	125	129	11.9999
))))	chr1:32691954-32692162(+)$1	1	102	106	11.9999
)..)	chr17:42397340-42397569(-)$1	1	108	112	11.9999
.)))	chr1:15987501-15987761(+)$1	1	17	21	11.9999
((((	chr19:33132892-33133120(-)$1	1	96	100	11.9999
(((.	chr16:24135115-24135337(+)$1	1	162	166	11.9999
))))	chr6:30691360-30691577(+)$1	1	126	130	11.9999
((((	chrX:53407485-53407729(-)$1	1	13	17	11.9999
(((.	chr2:27445043-27445251(+)$1	1	34	38	11.9999
.(((	chr16:89627581-89627785(+)$1	1	33	37	11.9999
))))	chr1:220363617-220363831(-)$1	1	132	136	11.9999
....	chr16:87873254-87873527(-)$1	1	59	63	11.9999
)).(	chr4:109543190-109543413(+)$1	1	41	45	11.9999
))))	chr19:14674893-14675110(+)$1	1	76	80	11.9999
.(((	chr22:20303621-20303842(-)$1	1	10	14	11.9999
..).	chr6:33243499-33243707(+)$1	1	179	183	11.9999
((((	chr16:29705884-29706086(+)$1	1	79	83	11.9999
((((	chr17:40991252-40991497(+)$1	1	1	5	11.9999
((((	chr8:48749705-48749922(-)$1	1	5	9	11.9999
))).	chr22:38247390-38247597(+)$1	1	120	124	11.9999
((((	chr10:103900235-103900501(+)$1	1	1	5	11.9999
.(((	chr7:56121961-56122187(+)$1	1	201	205	11.9999
)..(	chr16:2013049-2013251(-)$1	1	109	113	11.9999
((((	chr1:12089727-12089946(+)$1	1	19	23	11.9999
((..	chr11:118925213-118925440(-)$1	1	115	119	11.9999
.)).	chr15:34519843-34520141(+)$1	1	51	55	11.9999
....	chr15:77348305-77348561(-)$1	1	60	64	11.9999
((..	chr13:98655173-98655390(+)$1	1	7	11	11.9999
(...	chr7:98984224-98984444(+)$1	1	201	205	11.9999
(((.	chr14:102551994-102552196(-)$1	1	5	9	11.9999
((((	chr19:47104581-47104794(+)$1	1	36	40	11.9999
((..	chr16:89627534-89627737(+)$1	1	23	27	11.9999
((((	chr14:20781798-20782017(-)$1	1	99	103	11.9999
((((	chr1:116940421-116940631(+)$1	1	39	43	11.9999
.)).	chr1:36929667-36929873(-)$1	1	20	24	11.9999
)))(	chr17:37358583-37358789(+)$1	1	17	21	11.9999
))))	chr2:42556909-42557155(+)$1	1	219	223	11.9999
..))	chr22:24143142-24143364(+)$1	1	139	143	11.9999
)).)	chr11:67353766-67353986(+)$1	1	60	64	11.9999
..((	chr19:39926410-39926620(-)$1	1	102	106	11.9999
....	chr12:56536998-56537213(+)$1	1	55	59	11.9999
...(	chr11:71810056-71810288(-)$1	1	3	7	11.9999
(..(	chr11:71154940-71155169(-)$1	1	3	7	11.9999
((((	chr3:52027779-52028004(-)$1	1	110	114	11.9999
))))	chr19:18684016-18684233(+)$1	1	206	210	11.9999
)).)	chr2:85866251-85866487(+)$1	1	154	158	11.9999
.)))	chr6:27100138-27100352(-)$1	1	125	129	11.9999
))))	chr19:39191244-39191449(+)$1	1	87	91	11.9999
.)).	chr15:41771200-41771456(+)$1	1	112	116	11.9999
))).	chr14:102552250-102552477(-)$1	1	78	82	11.9999
((((	chr16:1363971-1364197(+)$1	1	175	179	11.9999
((((	chr10:72643663-72643883(-)$1	1	1	5	11.9999
((((	chr17:34842459-34842730(+)$1	1	32	36	11.9999
((((	chr11:64012190-64012395(-)$1	1	13	17	11.9999
))))	chr17:75190854-75191094(+)$1	1	60	64	11.9999
)).(	chr20:32883109-32883331(-)$1	1	62	66	11.9999
((((	chr16:58199443-58199668(-)$1	1	70	74	11.9999
((((	chr1:11116670-11116901(-)$1	1	25	29	11.9999
....	chr6:160205679-160205954(-)$1	1	109	113	11.9999
((((	chr17:27074954-27075164(+)$1	1	30	34	11.9999
.(((	chr2:27438132-27438343(+)$1	1	5	9	11.9999
(((.	chr1:229676342-229676571(-)$1	1	75	79	11.9999
....	chr12:123801771-123802002(-)$1	1	21	25	11.9999
(.((	chr19:1556710-1556964(-)$1	1	42	46	11.9999
.)))	chr17:7404820-7405028(+)$1	1	50	54	11.9999
((((	chr3:57835378-57835644(+)$1	1	105	109	11.9999
(...	chr1:182821327-182821567(+)$1	1	15	19	11.9999
))))	chr16:69153152-69153413(-)$1	1	246	250	11.9999
))))	chr9:77745393-77745636(+)$1	1	173	177	11.9999
))))	chr2:242202131-242202389(-)$1	1	161	165	11.9999
((((	chr1:36643998-36644242(+)$1	1	23	27	11.9999
))..	chr16:2817221-2817430(+)$1	1	76	80	11.9999
((..	chr7:56119547-56119778(+)$1	1	50	54	11.9999
....	chr11:118888085-118888308(-)$1	1	164	168	11.9999
((((	chr15:30010496-30010750(-)$1	1	62	66	11.9999

#PSSM
G : 0.98	g : 0.01	
C : 0.98	c : 0.01	
U : 0.99	
G : 0.99	

#score	1019.9999999999995
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF305BNZ_LARP7_UTR_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
::::::::FFFFFFffffff[ffffffccc[ffffff!!bb!!bb[cccqqqqqqqqccc]bb]bb]ffffffccc]ffffff4444ffffff::ccc[dddd(((((((((bbeeeeellleeeee]bbddddccc:::cccpppppppcccFFFFFFggggggg####ccc[ccc%%%%%%ccc[ccc[bbnnnnnbb]cccccc4444ccc]cccggggggg:::::::	chr7:111928769-111929038(+)$1	269	8	240	696.0000

#DB
........((((((((((((.(((((((((.((((((..((..((.(((........))).)).)).))))))))).))))))....))))))..(((.((((.........(((((((...))))).)))))))))...(((.......)))))))))(((((((....(((.(((......(((.(((.((.....)).))))))....))).)))))))))).......	chr7:111928769-111929038(+)$1	1	8	240	696.0000

#PSSM
a : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	

#score	696.0
#seq	1
#width	232
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_transcript_m2_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
LBBKKEEEEE{BBLLLCCCPPPPPPPHHHHHHHH{GGGGGGG{BB:eeeeeqqqqqqqqeeeee::::::bb"""iiiiiiiiiccc[bbmmmmbb]ccc7777777iiiiiiiii333bbBB}GGGGGGGYYHHHHHHHH|||||||CCC}BB}EEEEEYYBBYYEEEEEZZZDDDD~~~~EEEEE:::::::::::::::ccc"""==========="""bboooooobb333===========4444ccc::	chr5:131549531-131549843(-)$1	312	49	304	765.0000

#DB
.((..(((((.((...(((.......((((((((.(((((((.((.(((((........)))))......((...((((((((((((.((....)).))).......)))))))))...)))).)))))))..)))))))).......))).)).)))))..))..)))))...))))....)))))...............(((...(((((((((((...((......))...)))))))))))....)))..	chr5:131549531-131549843(-)$1	1	49	304	765.0000

#PSSM
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	

#score	765.0
#seq	1
#width	255
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_UTR_m3_run1.nuc.txt

#NT
GGGGGGUCUGC	chr21:46933935-46934215(-)$1	280	38	49	15.9347
GGCAGGGCUGG	chr7:1577316-1577592(+)$1	276	76	87	17.2391
ggcgcggcugc	chr1:1243139-1243406(-)$1	267	150	161	20.9347
GGAGGGGCUGG	chr3:195635834-195636067(-)$1	233	9	20	16.9130
GGCGCGGCGGC	chr13:113863738-113863997(+)$1	259	53	64	19.3043
GGUGAGGCUGC	chr8:144678135-144678384(-)$1	249	102	113	17.0217
GGCGGGGCGGC	chr16:53165002-53165291(+)$1	289	276	287	22.8913
GGCAGGACUGC	chr17:79859480-79859735(-)$1	255	229	240	16.4782
GGUGAGGCUGC	chr8:22224856-22225153(+)$1	297	25	36	17.0217
cgcggggccgc	chr16:4664240-4664496(-)$1	256	40	51	18.1086
GGCGGGGCCCG	chr13:24153372-24153631(+)$1	259	60	71	15.0652
GGCGGUGCCGC	chr22:39916786-39917047(+)$1	261	51	62	18.2173
GGCCUGGCUGC	chr11:703346-703625(-)$1	279	169	180	17.5652
GCCCGGGCUGC	chr8:144679194-144679447(-)$1	253	1	12	17.3478
GGCGGGGGUUC	chr19:1470187-1470438(-)$1	251	82	93	15.9347
ggccgggcucc	chr9:130331109-130331381(-)$1	272	137	148	17.8913
GGCGGGGCGGG	chr19:35491138-35491399(+)$1	261	27	38	19.1956
CGCGGGGCUGG	chr3:48470759-48471037(-)$1	278	33	44	16.4782
ggcggggcggc	chr19:42788121-42788369(+)$1	248	221	232	22.8913
GGCCGGGCUCC	chr3:52567604-52567906(-)$1	302	9	20	17.8913
ggUGGGGCAGC	chr16:4660955-4661201(-)$1	246	108	119	18.3260
ggccgggcggc	chr16:4400900-4401300(-)$1	400	126	137	19.9565
ggcgcggcggc	chr14:32546299-32546558(+)$1	259	31	42	19.3043
ggcggggcugc	chr20:35491842-35492135(-)$1	293	0	11	24.5217
GGCGGCGCUGC	chr17:80190016-80190277(+)$1	261	184	195	20.7173
ggcggcgcugc	chr22:41488086-41488355(+)$1	269	206	217	20.7173
GGAGGCGCUGC	chr19:10613047-10613294(-)$1	247	144	155	16.8043
GGCGGCGCUGC	chr17:80190134-80190409(+)$1	275	66	77	20.7173
GGCGGGGCUGC	chr20:62694437-62694758(+)$1	321	115	126	24.5217
ggccgggcugg	chr8:30669833-30670093(-)$1	260	114	125	17.8913
GGCGCGGCUUC	chr17:79860843-79861134(-)$1	291	169	180	16.9130
ggcggggcccc	chr2:242447571-242447832(-)$1	261	161	172	18.7608
CGUGGGGCUGC	chr20:57267737-57268015(+)$1	278	227	238	16.5869
GGCGGGACGGC	chr12:133405090-133405349(-)$1	259	85	96	18.4347
GGCCGGGCGGC	chr16:4664131-4664440(-)$1	309	55	66	19.9565
GACGGCGCUGC	chr2:242673993-242674363(+)$1	370	241	252	16.2608
GGCUGGGCGGC	chr11:18034155-18034429(-)$1	274	17	28	19.1956
GGCGGGGCUCC	chr17:79825821-79826061(+)$1	240	43	54	20.8260
ggcgcggccgc	chr22:39916980-39917260(+)$1	280	124	135	18.8695
GGCGGGGCGGC	chr17:36955861-36956145(-)$1	284	152	163	22.8913
gguggggccgc	chr11:3013154-3013467(-)$1	313	50	61	18.8695
GGCGGGGCAGC	chr17:41622773-41623039(+)$1	266	46	57	21.9130
GGCGGGGGGGC	chr19:42758624-42758904(-)$1	280	123	134	18.3260
GGCGGGGCUGC	chr6:151187459-151187742(+)$1	283	122	133	24.5217
GCCGGGGCCGC	chr7:5463047-5463306(-)$1	259	173	184	18.2173

#otherMatches

#Struct PSSM
dddccccccff	chr8:144679309-144679553(-)$1	244	107	118	17.3478
IIIIIIDDDD:	chr21:46933935-46934215(-)$1	280	38	49	15.9347
H{CCC{BBCCC	chr7:1577316-1577592(+)$1	276	76	87	17.2391
d]a]dddd22g	chr1:1243139-1243406(-)$1	267	150	161	20.9347
:a[eeeeemmm	chr3:195635834-195636067(-)$1	233	9	20	16.9130
mmmmdddd]bb	chr13:113863738-113863997(+)$1	259	53	64	19.3043
bb]eeeee]bb	chr8:144678135-144678384(-)$1	249	102	113	17.0217
eeeeeffffff	chr16:53165002-53165291(+)$1	289	276	287	22.8913
::eeeee!!bb	chr17:79859480-79859735(-)$1	255	229	240	16.4782
ffff[bbbbii	chr8:22224856-22225153(+)$1	297	25	36	17.0217
llleeeee]cc	chr16:4664240-4664496(-)$1	256	40	51	18.1086
###ggggggg[	chr13:24153372-24153631(+)$1	259	60	71	15.0652
d]bb]a]gggg	chr22:39916786-39917047(+)$1	261	51	62	18.2173
bb[ffffffnn	chr11:703346-703625(-)$1	279	169	180	17.5652
fffff[a!!bb	chr8:144679194-144679447(-)$1	253	1	12	17.3478
"""ccc[eeee	chr19:1470187-1470438(-)$1	251	82	93	15.9347
33bb22eeeee	chr9:130331109-130331381(-)$1	272	137	148	17.8913
JJJJJJJJJJJ	chr19:35491138-35491399(+)$1	261	27	38	19.1956
ff[hhhhhhhh	chr3:48470759-48471037(-)$1	278	33	44	16.4782
CCCZZZCCCYY	chr19:42788121-42788369(+)$1	248	221	232	22.8913
dddd!!eeeee	chr3:52567604-52567906(-)$1	302	9	20	17.8913
hhhhh55555a	chr16:4660955-4661201(-)$1	246	108	119	18.3260
II}FFFFFFBB	chr16:4400900-4401300(-)$1	400	126	137	19.9565
d[ccchhhhhh	chr14:32546299-32546558(+)$1	259	31	42	19.3043
dddd[dddd[c	chr20:35491842-35492135(-)$1	293	0	11	24.5217
dmmmmdddd]c	chr17:80190016-80190277(+)$1	261	184	195	20.7173
======]bb]d	chr22:41488086-41488355(+)$1	269	206	217	20.7173
ee22eeeeegg	chr19:10613047-10613294(-)$1	247	144	155	16.8043
:BB{AKKEEEE	chr17:80190134-80190409(+)$1	275	66	77	20.7173
hhh[dddd[bb	chr20:62694437-62694758(+)$1	321	115	126	24.5217
ggggggg]fff	chr8:30669833-30670093(-)$1	260	114	125	17.8913
ccc]ccc]ccc	chr17:79860843-79861134(-)$1	291	169	180	16.9130
}BBZZZEEEEE	chr2:242447571-242447832(-)$1	261	161	172	18.7608
#eeeee[ccc[	chr20:57267737-57268015(+)$1	278	227	238	16.5869
ffffff!!ccc	chr12:133405090-133405349(-)$1	259	85	96	18.4347
KDDDDDDDDdd	chr16:4664131-4664440(-)$1	309	55	66	19.9565
]bbCCC}BB}G	chr2:242673993-242674363(+)$1	370	241	252	16.2608
llffffff]cc	chr11:18034155-18034429(-)$1	274	17	28	19.1956
d[ddddllldd	chr17:79825821-79826061(+)$1	240	43	54	20.8260
3dddd]iiiii	chr22:39916980-39917260(+)$1	280	124	135	18.8695
GGGGGG::ddd	chr17:36955861-36956145(-)$1	284	152	163	22.8913
oooooa]ccci	chr11:3013154-3013467(-)$1	313	50	61	18.8695
]bbCCCdddde	chr17:41622773-41623039(+)$1	266	46	57	21.9130
ggggggmmmmg	chr19:42758624-42758904(-)$1	280	123	134	18.3260
fffff[dddd[	chr6:151187459-151187742(+)$1	283	122	133	24.5217
4ccc]iiiiii	chr7:5463047-5463306(-)$1	259	173	184	18.2173

#DB
)))))))))))	chr8:144679309-144679553(-)$1	1	107	118	17.3478
((((((((((.	chr21:46933935-46934215(-)$1	1	38	49	15.9347
(.(((.(((((	chr7:1577316-1577592(+)$1	1	76	87	17.2391
).).))))..)	chr1:1243139-1243406(-)$1	1	150	161	20.9347
.(.(((((...	chr3:195635834-195636067(-)$1	1	9	20	16.9130
....)))).))	chr13:113863738-113863997(+)$1	1	53	64	19.3043
)).))))).))	chr8:144678135-144678384(-)$1	1	102	113	17.0217
)))))))))))	chr16:53165002-53165291(+)$1	1	276	287	22.8913
..(((((..((	chr17:79859480-79859735(-)$1	1	229	240	16.4782
((((.((((((	chr8:22224856-22225153(+)$1	1	25	36	17.0217
...))))).))	chr16:4664240-4664496(-)$1	1	40	51	18.1086
...(((((((.	chr13:24153372-24153631(+)$1	1	60	71	15.0652
).)).).))))	chr22:39916786-39917047(+)$1	1	51	62	18.2173
((.((((((..	chr11:703346-703625(-)$1	1	169	180	17.5652
(((((.(..((	chr8:144679194-144679447(-)$1	1	1	12	17.3478
...(((.((((	chr19:1470187-1470438(-)$1	1	82	93	15.9347
..))..)))))	chr9:130331109-130331381(-)$1	1	137	148	17.8913
(((((((((((	chr19:35491138-35491399(+)$1	1	27	38	19.1956
((.((((((((	chr3:48470759-48471037(-)$1	1	33	44	16.4782
)))...)))..	chr19:42788121-42788369(+)$1	1	221	232	22.8913
((((..(((((	chr3:52567604-52567906(-)$1	1	9	20	17.8913
))))).....)	chr16:4660955-4661201(-)$1	1	108	119	18.3260
)).))))))((	chr16:4400900-4401300(-)$1	1	126	137	19.9565
(.(((((((((	chr14:32546299-32546558(+)$1	1	31	42	19.3043
((((.((((.(	chr20:35491842-35492135(-)$1	1	0	11	24.5217
(....)))).)	chr17:80190016-80190277(+)$1	1	184	195	20.7173
)))))).)).)	chr22:41488086-41488355(+)$1	1	206	217	20.7173
))..)))))((	chr19:10613047-10613294(-)$1	1	144	155	16.8043
.((.(..((((	chr17:80190134-80190409(+)$1	1	66	77	20.7173
(((.((((.((	chr20:62694437-62694758(+)$1	1	115	126	24.5217
))))))).)))	chr8:30669833-30670093(-)$1	1	114	125	17.8913
))).))).)))	chr17:79860843-79861134(-)$1	1	169	180	16.9130
.))...)))))	chr2:242447571-242447832(-)$1	1	161	172	18.7608
.(((((.(((.	chr20:57267737-57268015(+)$1	1	227	238	16.5869
((((((..(((	chr12:133405090-133405349(-)$1	1	85	96	18.4347
.((((((((((	chr16:4664131-4664440(-)$1	1	55	66	19.9565
.))))).)).)	chr2:242673993-242674363(+)$1	1	241	252	16.2608
..)))))).))	chr11:18034155-18034429(-)$1	1	17	28	19.1956
(.((((...))	chr17:79825821-79826061(+)$1	1	43	54	20.8260
.)))).)))))	chr22:39916980-39917260(+)$1	1	124	135	18.8695
))))))..(((	chr17:36955861-36956145(-)$1	1	152	163	22.8913
.....).))))	chr11:3013154-3013467(-)$1	1	50	61	18.8695
.))((((((((	chr17:41622773-41623039(+)$1	1	46	57	21.9130
((((((....)	chr19:42758624-42758904(-)$1	1	123	134	18.3260
(((((.((((.	chr6:151187459-151187742(+)$1	1	122	133	24.5217
.))).))))))	chr7:5463047-5463306(-)$1	1	173	184	18.2173

#PSSM
G : 0.67	g : 0.26	C : 0.04	c : 0.02	
G : 0.63	g : 0.28	C : 0.06	A : 0.02	
C : 0.58	c : 0.23	U : 0.08	A : 0.04	G : 0.02	u : 0.02	
G : 0.56	g : 0.19	C : 0.10	c : 0.06	A : 0.04	U : 0.02	
G : 0.63	g : 0.19	c : 0.06	C : 0.04	A : 0.04	U : 0.02	
G : 0.63	g : 0.23	C : 0.08	U : 0.02	c : 0.02	
G : 0.67	g : 0.26	A : 0.04	U : 0.02	
C : 0.69	c : 0.26	G : 0.04	
U : 0.45	G : 0.17	u : 0.10	c : 0.08	C : 0.06	g : 0.06	A : 0.04	
G : 0.63	g : 0.21	C : 0.06	U : 0.04	c : 0.04	
C : 0.63	c : 0.23	G : 0.10	g : 0.02	

#score	871.6956521739125
#seq	46
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_CDS_m1_run2.nuc.txt

#NT
UGGGCCCGGG	chr17:74533296-74533586(-)$1	290	173	183	18.6666
ggggccgggg	chr17:80009414-80009678(+)$1	264	100	110	24.0833
GGAGCCGGGG	chr9:80645337-80645608(-)$1	271	46	56	19.4166
cgggccgggg	chr8:25315648-25315967(-)$1	319	278	288	22.2499
GGGGCCGAGG	chr17:36760676-36760920(-)$1	244	171	181	20.0833
cgggccgggg	chr19:1469420-1469662(-)$1	242	189	199	22.2499
UGGGCCUGGG	chr8:143381907-143382167(-)$1	260	98	108	18.5000
UGGCCCGGGG	chr4:78740054-78740319(-)$1	265	122	132	17.7499
cggggcgggg	chr3:195622838-195623071(-)$1	233	221	231	18.0833
UGGGCCGGGC	chr22:50723193-50723441(-)$1	248	78	88	18.0833
AGGGCUGGGG	chr21:46929292-46929520(-)$1	228	100	110	17.6666
AGGGCGGGGG	chr14:32546428-32546681(+)$1	253	33	43	17.4166
GGGGCCGGGG	chr19:1468580-1468841(-)$1	261	108	118	24.0833
CGGGGCGGGG	chr16:22019507-22019737(+)$1	230	103	113	18.0833
GGGGCCGGGG	chr19:59074107-59074388(+)$1	281	112	122	24.0833
cgggccgggg	chr2:231902554-231902863(+)$1	309	134	144	22.2499
ugggccgcgg	chr16:29818044-29818303(-)$1	259	26	36	18.9166
GGGGCCGCGG	chr2:231902245-231902504(+)$1	259	117	127	20.4166
ggggcagggg	chr21:47565650-47565867(-)$1	217	151	161	19.8333
gggggcgggg	chr4:2819808-2820069(+)$1	261	41	51	19.9166
AGGGCUGGGG	chr14:104165093-104165399(+)$1	306	231	241	17.6666
UGGGGCGGGG	chr22:20786024-20786292(-)$1	268	99	109	18.4166
AAGGCCGGGG	chr13:114144740-114145035(-)$1	295	13	23	17.2499
gaggccgggg	chr2:74684573-74684804(+)$1	231	101	111	19.5833
GGGGCCGAGG	chr17:36760599-36760876(-)$1	277	127	137	20.0833
ggggccgcgg	chr19:56599675-56599900(-)$1	225	113	123	20.4166
GGGGCUGGGG	chr19:41858836-41859087(+)$1	251	187	197	19.9999
ggggccggag	chr19:47778065-47778382(+)$1	317	0	10	19.4999
CCGGCCGGGG	chr16:85646892-85647151(+)$1	259	127	137	17.6666
ggggcccggg	chr2:231902401-231902653(+)$1	252	100	110	20.1666
ggggcccggg	chr1:895958-896236(+)$1	278	174	184	20.1666
ggggccgcgg	chr2:241496664-241496977(-)$1	313	123	133	20.4166
ggggccgggg	chr1:2160057-2160316(+)$1	259	89	99	24.0833
cgggcccggg	chr15:102029726-102029990(-)$1	264	227	237	18.3333
UGGGCCGGGC	chr22:50723241-50723602(-)$1	361	239	249	18.0833
UGGGCCGGGG	chr17:75471570-75471826(+)$1	256	193	203	22.5833
UGGGCCGGGC	chr9:35792332-35792599(+)$1	267	239	249	18.0833
ggggccgggg	chr6:32157536-32157782(-)$1	246	127	137	24.0833
UGGGCCGCGG	chr19:2270573-2270852(+)$1	279	133	143	18.9166
UGGGCCGGGG	chr1:228329286-228329568(+)$1	282	8	18	22.5833
GGGGCCGCGG	chr17:76419833-76420105(+)$1	272	240	250	20.4166
CGGGCCGUGG	chr6:30709904-30710209(-)$1	305	113	123	18.2500
ggggccgggg	chr19:3700175-3700415(-)$1	240	189	199	24.0833
GGGGCCGGGG	chr16:723875-724145(+)$1	270	19	29	24.0833
ugggccgggg	chr10:101379816-101380100(-)$1	284	117	127	22.5833
GGGGCUGGGG	chr11:72384986-72385282(-)$1	296	115	125	19.9999
ggggccgggg	chr16:29818188-29818469(-)$1	281	16	26	24.0833
ggggccgggg	chr17:47841252-47841518(-)$1	266	110	120	24.0833
GUGGCCGGGG	chr20:35491300-35491591(-)$1	291	105	115	19.4999
GGGGCCGGGG	chr10:101379900-101380215(-)$1	315	53	63	24.0833
cgggcCCGGG	chr6:170123777-170124061(-)$1	284	48	58	18.3333
GGAGCCGGGG	chr5:139493607-139493875(+)$1	268	67	77	19.4166
cggggcgggg	chr10:134210601-134210870(+)$1	269	96	106	18.0833
UGGGCCGUGG	chr13:113764914-113765148(+)$1	234	16	26	18.5833
GGGGCCGGAG	chr15:74725829-74726185(-)$1	356	323	333	19.4999
GGGGCAGGGG	chr19:58991365-58991648(-)$1	283	109	119	19.8333
ggggccggug	chr7:5336377-5336678(+)$1	301	85	95	19.4166
ggggccgggg	chr17:47841318-47841588(-)$1	270	180	190	24.0833
GGGGCCUGGG	chr19:18653560-18653839(-)$1	279	205	215	19.9999

#otherMatches

#Struct PSSM
GGHHHHHHHH	chr19:2811919-2812166(+)$1	247	14	24	18.5000
eeebb[bbmm	chr17:74533296-74533586(-)$1	290	173	183	18.6666
EE{GGGGGGG	chr17:80009414-80009678(+)$1	264	100	110	24.0833
"""ddddddd	chr9:80645337-80645608(-)$1	271	46	56	19.4166
bb[dddd"""	chr8:25315648-25315967(-)$1	319	278	288	22.2499
iiiibbmmmm	chr17:36760676-36760920(-)$1	244	171	181	20.0833
h]hhhhhhhh	chr19:1469420-1469662(-)$1	242	189	199	22.2499
eiiiiiiiii	chr8:143381907-143382167(-)$1	260	98	108	18.5000
e!!ddddmmm	chr4:78740054-78740319(-)$1	265	122	132	17.7499
JJJJJJJJJJ	chr3:195622838-195623071(-)$1	233	221	231	18.0833
eeeecccccc	chr22:50723193-50723441(-)$1	248	78	88	18.0833
ppppiiiiii	chr21:46929292-46929520(-)$1	228	100	110	17.6666
$bb[bbqqqq	chr14:32546428-32546681(+)$1	253	33	43	17.4166
hhhh333bb]	chr19:1468580-1468841(-)$1	261	108	118	24.0833
cccccc[eee	chr16:22019507-22019737(+)$1	230	103	113	18.0833
HHHHHEEEEE	chr19:59074107-59074388(+)$1	281	112	122	24.0833
===bbccc]g	chr2:231902554-231902863(+)$1	309	134	144	22.2499
iiiiiiii:c	chr16:29818044-29818303(-)$1	259	26	36	18.9166
nnneeeee33	chr2:231902245-231902504(+)$1	259	117	127	20.4166
555ffffff2	chr21:47565650-47565867(-)$1	217	151	161	19.8333
{BBKKA{FFF	chr4:2819808-2820069(+)$1	261	41	51	19.9166
ccc[ffffff	chr14:104165093-104165399(+)$1	306	231	241	17.6666
CCFFFFFFFF	chr22:20786024-20786292(-)$1	268	99	109	18.4166
::::bb[a[d	chr13:114144740-114145035(-)$1	295	13	23	17.2499
II{FFFFFFC	chr2:74684573-74684804(+)$1	231	101	111	19.5833
GGGGG:::HH	chr17:36760599-36760876(-)$1	277	127	137	20.0833
ddd[hhhhhh	chr19:56599675-56599900(-)$1	225	113	123	20.4166
IIIffffffn	chr19:41858836-41859087(+)$1	251	187	197	19.9999
:GGGGGGG:J	chr19:47778065-47778382(+)$1	317	0	10	19.4999
:ccc!!eeee	chr16:85646892-85647151(+)$1	259	127	137	17.6666
ffffdddd]=	chr2:231902401-231902653(+)$1	252	100	110	20.1666
ffffffdddd	chr1:895958-896236(+)$1	278	174	184	20.1666
mmdddd]ddd	chr2:241496664-241496977(-)$1	313	123	133	20.4166
EEEEEDDDDE	chr1:2160057-2160316(+)$1	259	89	99	24.0833
2=========	chr15:102029726-102029990(-)$1	264	227	237	18.3333
}DDDDDDDD:	chr22:50723241-50723602(-)$1	361	239	249	18.0833
ffffff]bb:	chr17:75471570-75471826(+)$1	256	193	203	22.5833
fffffeeeee	chr9:35792332-35792599(+)$1	267	239	249	18.0833
mmmccc]ddd	chr6:32157536-32157782(-)$1	246	127	137	24.0833
h!!bbdddd!	chr19:2270573-2270852(+)$1	279	133	143	18.9166
DDDEEEEEKK	chr1:228329286-228329568(+)$1	282	8	18	22.5833
ff]a22a]dd	chr17:76419833-76420105(+)$1	272	240	250	20.4166
bb[bb[ffff	chr6:30709904-30710209(-)$1	305	113	123	18.2500
GABB}CCCII	chr19:3700175-3700415(-)$1	240	189	199	24.0833
dda]ffffff	chr16:723875-724145(+)$1	270	19	29	24.0833
b[ddddmmmm	chr10:101379816-101380100(-)$1	284	117	127	22.5833
a]dddd]bb]	chr11:72384986-72385282(-)$1	296	115	125	19.9999
ffffbb"""a	chr16:29818188-29818469(-)$1	281	16	26	24.0833
e"""cccnnn	chr17:47841252-47841518(-)$1	266	110	120	24.0833
[ddddbbbb[	chr20:35491300-35491591(-)$1	291	105	115	19.4999
[ggggggg""	chr10:101379900-101380215(-)$1	315	53	63	24.0833
ddhhhhhhhh	chr6:170123777-170124061(-)$1	284	48	58	18.3333
bIIIIIIIII	chr5:139493607-139493875(+)$1	268	67	77	19.4166
dd[a[bb!!i	chr10:134210601-134210870(+)$1	269	96	106	18.0833
nnbb]bb]ee	chr13:113764914-113765148(+)$1	234	16	26	18.5833
H}EEEEE}DD	chr15:74725829-74726185(-)$1	356	323	333	19.4999
eeeHHHHHHH	chr19:58991365-58991648(-)$1	283	109	119	19.8333
D{AKKBBKKC	chr7:5336377-5336678(+)$1	301	85	95	19.4166
GGGGGGa[cc	chr17:47841318-47841588(-)$1	270	180	190	24.0833
[ffffff"""	chr19:18653560-18653839(-)$1	279	205	215	19.9999

#DB
((((((((((	chr19:2811919-2812166(+)$1	1	14	24	18.5000
(((((.((..	chr17:74533296-74533586(-)$1	1	173	183	18.6666
((.(((((((	chr17:80009414-80009678(+)$1	1	100	110	24.0833
...(((((((	chr9:80645337-80645608(-)$1	1	46	56	19.4166
((.((((...	chr8:25315648-25315967(-)$1	1	278	288	22.2499
))))((....	chr17:36760676-36760920(-)$1	1	171	181	20.0833
).))))))))	chr19:1469420-1469662(-)$1	1	189	199	22.2499
)(((((((((	chr8:143381907-143382167(-)$1	1	98	108	18.5000
(..((((...	chr4:78740054-78740319(-)$1	1	122	132	17.7499
))))))))))	chr3:195622838-195623071(-)$1	1	221	231	18.0833
((((((((((	chr22:50723193-50723441(-)$1	1	78	88	18.0833
....))))))	chr21:46929292-46929520(-)$1	1	100	110	17.6666
.((.((....	chr14:32546428-32546681(+)$1	1	33	43	17.4166
))))...)).	chr19:1468580-1468841(-)$1	1	108	118	24.0833
((((((.(((	chr16:22019507-22019737(+)$1	1	103	113	18.0833
((((((((((	chr19:59074107-59074388(+)$1	1	112	122	24.0833
)))))))).)	chr2:231902554-231902863(+)$1	1	134	144	22.2499
)))))))).(	chr16:29818044-29818303(-)$1	1	26	36	18.9166
...)))))..	chr2:231902245-231902504(+)$1	1	117	127	20.4166
...)))))).	chr21:47565650-47565867(-)$1	1	151	161	19.8333
.((..(.(((	chr4:2819808-2820069(+)$1	1	41	51	19.9166
(((.((((((	chr14:104165093-104165399(+)$1	1	231	241	17.6666
))))))))))	chr22:20786024-20786292(-)$1	1	99	109	18.4166
....((.(.(	chr13:114144740-114145035(-)$1	1	13	23	17.2499
((.(((((((	chr2:74684573-74684804(+)$1	1	101	111	19.5833
)))))...((	chr17:36760599-36760876(-)$1	1	127	137	20.0833
(((.((((((	chr19:56599675-56599900(-)$1	1	113	123	20.4166
)))((((((.	chr19:41858836-41859087(+)$1	1	187	197	19.9999
.(((((((.(	chr19:47778065-47778382(+)$1	1	0	10	19.4999
.(((..((((	chr16:85646892-85647151(+)$1	1	127	137	17.6666
)))))))).)	chr2:231902401-231902653(+)$1	1	100	110	20.1666
((((((((((	chr1:895958-896236(+)$1	1	174	184	20.1666
..)))).)))	chr2:241496664-241496977(-)$1	1	123	133	20.4166
((((((((((	chr1:2160057-2160316(+)$1	1	89	99	24.0833
.)))))))))	chr15:102029726-102029990(-)$1	1	227	237	18.3333
.)))))))).	chr22:50723241-50723602(-)$1	1	239	249	18.0833
)))))).)).	chr17:75471570-75471826(+)$1	1	193	203	22.5833
)))))(((((	chr9:35792332-35792599(+)$1	1	239	249	18.0833
...))).)))	chr6:32157536-32157782(-)$1	1	127	137	24.0833
(..((((((.	chr19:2270573-2270852(+)$1	1	133	143	18.9166
((((((((..	chr1:228329286-228329568(+)$1	1	8	18	22.5833
)).)..).))	chr17:76419833-76420105(+)$1	1	240	250	20.4166
((.((.((((	chr6:30709904-30710209(-)$1	1	113	123	18.2500
)))).)))))	chr19:3700175-3700415(-)$1	1	189	199	24.0833
))).))))))	chr16:723875-724145(+)$1	1	19	29	24.0833
(.((((....	chr10:101379816-101380100(-)$1	1	117	127	22.5833
).)))).)).	chr11:72384986-72385282(-)$1	1	115	125	19.9999
((((((...(	chr16:29818188-29818469(-)$1	1	16	26	24.0833
(...(((...	chr17:47841252-47841518(-)$1	1	110	120	24.0833
.((((((((.	chr20:35491300-35491591(-)$1	1	105	115	19.4999
.(((((((..	chr10:101379900-101380215(-)$1	1	53	63	24.0833
))))))))))	chr6:170123777-170124061(-)$1	1	48	58	18.3333
)(((((((((	chr5:139493607-139493875(+)$1	1	67	77	19.4166
((.(.((..(	chr10:134210601-134210870(+)$1	1	96	106	18.0833
..)).)).))	chr13:113764914-113765148(+)$1	1	16	26	18.5833
).))))).))	chr15:74725829-74726185(-)$1	1	323	333	19.4999
)))(((((((	chr19:58991365-58991648(-)$1	1	109	119	19.8333
(.(..((..(	chr7:5336377-5336678(+)$1	1	85	95	19.4166
))))))(.((	chr17:47841318-47841588(-)$1	1	180	190	24.0833
.((((((...	chr19:18653560-18653839(-)$1	1	205	215	19.9999

#PSSM
g : 0.26	G : 0.26	U : 0.19	c : 0.11	A : 0.06	C : 0.05	u : 0.03	
G : 0.53	g : 0.39	A : 0.01	a : 0.01	C : 0.01	U : 0.01	
G : 0.55	g : 0.41	A : 0.03	
G : 0.56	g : 0.41	C : 0.01	
C : 0.55	c : 0.36	g : 0.05	G : 0.03	
C : 0.49	c : 0.38	U : 0.06	G : 0.01	a : 0.01	A : 0.01	
G : 0.51	g : 0.35	U : 0.05	c : 0.05	C : 0.03	
G : 0.48	g : 0.35	c : 0.05	C : 0.05	A : 0.03	U : 0.03	
G : 0.58	g : 0.36	a : 0.01	A : 0.01	u : 0.01	
G : 0.55	g : 0.39	C : 0.05	

#score	1216.8333333333333
#seq	60
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_CDS_m2_run1.nuc.txt

#NT
CUGCUG	chr11:62648504-62648773(+)$1	269	192	198	18.0000
CUGCUG	chr6:43128466-43128757(+)$1	291	65	71	18.0000
CUGCUG	chr21:46285219-46285439(-)$1	220	10	16	18.0000
CUGCUG	chr11:838081-838379(+)$1	298	128	134	18.0000
CUGCUG	chr8:11706521-11706774(-)$1	253	41	47	18.0000
CUGCUG	chr3:52829518-52829720(+)$1	202	184	190	18.0000
CUGCUG	chr7:75614330-75614617(+)$1	287	144	150	18.0000
CUGCUG	chr15:44058958-44059198(+)$1	240	77	83	18.0000
CUGCUG	chr11:118922701-118922972(-)$1	271	151	157	18.0000
CUGCUG	chr1:230390863-230391150(+)$1	287	38	44	18.0000
CUGCUG	chr15:72500884-72501192(-)$1	308	35	41	18.0000
cugcug	chr19:18717346-18717644(-)$1	298	244	250	18.0000
CUGCUG	chr14:24566113-24566354(+)$1	241	183	189	18.0000
CUGCUG	chr17:39684158-39684438(-)$1	280	161	167	18.0000
CUGCUG	chr11:33731494-33731823(-)$1	329	25	31	18.0000
CUGCUG	chr1:230845787-230846012(-)$1	225	22	28	18.0000
CUGCUG	chr9:116840308-116840547(-)$1	239	85	91	18.0000
CUGCUG	chr1:109940208-109940462(-)$1	254	23	29	18.0000
CUGCUG	chr19:59056062-59056312(+)$1	250	242	248	18.0000
CUGCUG	chr10:82180152-82180497(+)$1	345	141	147	18.0000
CUGCUG	chr17:73132043-73132444(-)$1	401	156	162	18.0000
CUGCUG	chr10:54074084-54074384(+)$1	300	185	191	18.0000
CUGCUG	chr11:61595900-61596152(+)$1	252	202	208	18.0000
CUGCUG	chr10:85909840-85910086(+)$1	246	164	170	18.0000
CUGCUG	chr1:19577828-19578086(-)$1	258	125	131	18.0000
CUGCUG	chr17:80196510-80196755(+)$1	245	150	156	18.0000
CUGCUG	chrX:152966237-152966515(-)$1	278	57	63	18.0000
CUGCUG	chr7:100205516-100205775(+)$1	259	190	196	18.0000
CUGCUG	chr17:42426500-42426750(+)$1	250	151	157	18.0000
CUGCUG	chr12:53344011-53344227(+)$1	216	161	167	18.0000
CUGCUG	chr1:155287886-155288133(+)$1	247	133	139	18.0000
CUGCUG	chr11:64084819-64085070(-)$1	251	93	99	18.0000
CUGCUG	chr15:79603502-79603860(+)$1	358	131	137	18.0000
CUGCUG	chr17:79818206-79818471(-)$1	265	139	145	18.0000
CUGCUG	chr6:31912965-31913207(+)$1	242	32	38	18.0000

#otherMatches

#Struct PSSM
ee[ccc	chr1:8931934-8932145(-)$1	211	112	118	18.0000
fffffl	chr11:62648504-62648773(+)$1	269	192	198	18.0000
{EEEEE	chr6:43128466-43128757(+)$1	291	65	71	18.0000
KA{GGG	chr21:46285219-46285439(-)$1	220	10	16	18.0000
{CCC{B	chr11:838081-838379(+)$1	298	128	134	18.0000
ooobb]	chr8:11706521-11706774(-)$1	253	41	47	18.0000
ccc]gg	chr3:52829518-52829720(+)$1	202	184	190	18.0000
DDFFFF	chr7:75614330-75614617(+)$1	287	144	150	18.0000
!!ccc[	chr15:44058958-44059198(+)$1	240	77	83	18.0000
::ccc!	chr11:118922701-118922972(-)$1	271	151	157	18.0000
ttbb]a	chr1:230390863-230391150(+)$1	287	38	44	18.0000
HHHHBB	chr15:72500884-72501192(-)$1	308	35	41	18.0000
::EEEE	chr19:18717346-18717644(-)$1	298	244	250	18.0000
hhhhhh	chr14:24566113-24566354(+)$1	241	183	189	18.0000
ddddcc	chr17:39684158-39684438(-)$1	280	161	167	18.0000
uuccc]	chr11:33731494-33731823(-)$1	329	25	31	18.0000
c[ffff	chr1:230845787-230846012(-)$1	225	22	28	18.0000
======	chr9:116840308-116840547(-)$1	239	85	91	18.0000
BFFFFF	chr1:109940208-109940462(-)$1	254	23	29	18.0000
F}CCC:	chr19:59056062-59056312(+)$1	250	242	248	18.0000
IIIII:	chr10:82180152-82180497(+)$1	345	141	147	18.0000
KKDDDD	chr17:73132043-73132444(-)$1	401	156	162	18.0000
DDDDee	chr10:54074084-54074384(+)$1	300	185	191	18.0000
ccc]dd	chr11:61595900-61596152(+)$1	252	202	208	18.0000
:::::d	chr10:85909840-85910086(+)$1	246	164	170	18.0000
YYDDDD	chr1:19577828-19578086(-)$1	258	125	131	18.0000
E{CCCd	chr17:80196510-80196755(+)$1	245	150	156	18.0000
gggg[b	chrX:152966237-152966515(-)$1	278	57	63	18.0000
fffggg	chr7:100205516-100205775(+)$1	259	190	196	18.0000
444eee	chr17:42426500-42426750(+)$1	250	151	157	18.0000
dddd]b	chr12:53344011-53344227(+)$1	216	161	167	18.0000
ffff::	chr1:155287886-155288133(+)$1	247	133	139	18.0000
33ccc3	chr11:64084819-64085070(-)$1	251	93	99	18.0000
d[gggg	chr15:79603502-79603860(+)$1	358	131	137	18.0000
oooood	chr17:79818206-79818471(-)$1	265	139	145	18.0000
ff!!bb	chr6:31912965-31913207(+)$1	242	32	38	18.0000

#DB
((.(((	chr1:8931934-8932145(-)$1	1	112	118	18.0000
(((((.	chr11:62648504-62648773(+)$1	1	192	198	18.0000
.(((((	chr6:43128466-43128757(+)$1	1	65	71	18.0000
.(.(((	chr21:46285219-46285439(-)$1	1	10	16	18.0000
.(((.(	chr11:838081-838379(+)$1	1	128	134	18.0000
...)).	chr8:11706521-11706774(-)$1	1	41	47	18.0000
))).))	chr3:52829518-52829720(+)$1	1	184	190	18.0000
))((((	chr7:75614330-75614617(+)$1	1	144	150	18.0000
..(((.	chr15:44058958-44059198(+)$1	1	77	83	18.0000
..(((.	chr11:118922701-118922972(-)$1	1	151	157	18.0000
..)).)	chr1:230390863-230391150(+)$1	1	38	44	18.0000
((((((	chr15:72500884-72501192(-)$1	1	35	41	18.0000
..))))	chr19:18717346-18717644(-)$1	1	244	250	18.0000
((((((	chr14:24566113-24566354(+)$1	1	183	189	18.0000
((((((	chr17:39684158-39684438(-)$1	1	161	167	18.0000
..))).	chr11:33731494-33731823(-)$1	1	25	31	18.0000
(.((((	chr1:230845787-230846012(-)$1	1	22	28	18.0000
((((((	chr9:116840308-116840547(-)$1	1	85	91	18.0000
((((((	chr1:109940208-109940462(-)$1	1	23	29	18.0000
).))).	chr19:59056062-59056312(+)$1	1	242	248	18.0000
(((((.	chr10:82180152-82180497(+)$1	1	141	147	18.0000
..((((	chr17:73132043-73132444(-)$1	1	156	162	18.0000
))))((	chr10:54074084-54074384(+)$1	1	185	191	18.0000
))).))	chr11:61595900-61596152(+)$1	1	202	208	18.0000
.....(	chr10:85909840-85910086(+)$1	1	164	170	18.0000
..))))	chr1:19577828-19578086(-)$1	1	125	131	18.0000
(.((((	chr17:80196510-80196755(+)$1	1	150	156	18.0000
((((.(	chrX:152966237-152966515(-)$1	1	57	63	18.0000
((((((	chr7:100205516-100205775(+)$1	1	190	196	18.0000
...)))	chr17:42426500-42426750(+)$1	1	151	157	18.0000
)))).)	chr12:53344011-53344227(+)$1	1	161	167	18.0000
))))..	chr1:155287886-155288133(+)$1	1	133	139	18.0000
..))).	chr11:64084819-64085070(-)$1	1	93	99	18.0000
(.((((	chr15:79603502-79603860(+)$1	1	131	137	18.0000
.....)	chr17:79818206-79818471(-)$1	1	139	145	18.0000
((..((	chr6:31912965-31913207(+)$1	1	32	38	18.0000

#PSSM
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	

#score	648.0000000000001
#seq	36
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_UTR_m2_run1.nuc.txt

#NT
gucucacucuugcccagaacccaggcuggagugcaguggcccaaucucggcucacugcaaccuccaccucccagguuccagcgauucucaugccucagccuccugaguagcugggacuauaggcaugcaccacca	chr19:33203201-33203465(+)$1	264	118	253	230.8823
gugaagucucgcucugacacccaggcuggcgugcaguggugugaucucggcucacugcaaacuccgcuuccuggguucaagugguucuccugccccagccucccaaguagcugggauuacaggcaugcgccacca	chr21:45179969-45180232(+)$1	263	109	244	259.4117
acagagucuuacuugguugcccaggaugaagugcaauggagcgaucucggcucacugcaaccucugccuccuggguucaagcaauucuccugucucagccucucgaguagcugggauuacaggcgcaugccacca	chrX:73808166-73808453(-)$1	287	151	286	257.9411
guuuugcucuugucgcccaggcuggagugagugcaauggugcgaucuuggcucacugcaaccugcaccucccaggugcaagcgauucuccugccucagccuccggaguagcugggauuacaggcgcccgccacca	chr19:973018-973287(+)$1	269	115	250	231.1764
acagagucuagcucugucgcccaggcuggggugcaguggagugaucucggcucacugcaacuuccgccucccagguuuaagcgauucuccugccucagccuccugaguagcugggauuacaggcguaugccacca	chr1:6582805-6583048(-)$1	243	108	243	274.9999
acagagucucgcucugucgcccaguguggagugcaguggugugaucuuggcucacugcaaacuccgccucccagguucaagcgauucucccaccucagccuccugaguuggguccuacaggcgcacacgaccacg	chr1:21070008-21070230(-)$1	222	80	215	203.5294
agagugucucccuguguugcucaggcuggagugcaguggugugaucucggcucacuguaaccuucaccuacuggguucaaguaacucuccugccucagccucccgaguagcuuggacuacaggcgugcaccacca	chr11:65764639-65764905(-)$1	266	111	246	250.8823
acggagucucgcucugucaccaaggccggagugcaguggugcgaucucggcucacugcaagcuccgccucccagguucacgucauucuccugccucagccucccgacuagcugggacuacaggcgcccaccacca	chr5:36183280-36183537(+)$1	257	109	244	260.8823
ggagucuugcuguugcccaggcuggaguggagugcguggugugaucucggcucacugcaaacuccgccuccuggguucaagcgauucuccuggcccagccuccugaguagcugggauuacaggugugugccaccg	chr11:9303783-9304021(-)$1	238	100	235	219.7058
gacagagucucgcucugucgccuggcuggagugcaguggcgugaucucagcucacugcaaccuccgcuuccuggguucaagcaauucuccucccucagucuccugaguaccugggauuacaggcacgcaccacca	chr11:61133852-61134111(+)$1	259	108	243	221.7647
ggagucuugcuguugcccaggcuggaguggagugcguggugugaucucggcucacugcaaacuccgccuccuggguucaagcgauucuccuggcccagccuccugaguagcugggauuacaggugugugccaccg	chr11:9303752-9303983(-)$1	231	62	197	219.7058
acggugucucgcugcaucacccaggcuggagugcaguggcgcaaucucgccuuccugcagucuccgccuccugaguucaagcgauucuccugccucagccucccaaguagcugggacugcaggcgcgcacaccac	chr22:21304646-21304862(+)$1	216	76	211	230.5882
acagaguuucacucuuguucccuggcuggagugcaauggcacagucucggcucacugcaaccuccaccucccggguucaagugauccucuugccucagccucccaaguagcugggauuacaggcuccugccacca	chr14:102231827-102232080(+)$1	253	98	233	248.5294
acggaaucuugcucugucacccaggcuggagugcaguggccugguaucggcucagugcaacuuuugccucccggguucaagcgauuauccugccucagccuccugaauagcugggauuacaggcaugugccaccu	chr17:29222346-29222618(+)$1	272	97	232	247.3529
agauggaguuucacuguugcccaggcuggggugcaauggugugaucuuggcucacugcagccuccaccucccgaguucaaaugauucuccugccucagcuuccugaguagcugggauuacaggugcaugccacca	chr11:117039438-117039691(+)$1	253	89	224	242.9411
acagagucucgcuuuguugcccaggcuggagugcaguggcacacucuccgcucacugcaagcuccgccucccagguucaugcgauucuccugccucagccucucgaguagcugggauuacaggcgugcgccacua	chr12:133348986-133349236(-)$1	250	110	245	260.5882

#otherMatches

#Struct PSSM
e]ffffffeeeee[bb"""bb[ccc[eeeeeggggggg!!bbpppppppbb]ggggggg22eeeee333ccc]bb22bbeeeee:::GGGGGGGddddmmmmdddd:hhhhhhhh%%%%%%cccmmmmccc6666	chr3:10142982-10143239(+)$1	257	108	243	258.8235
gggggg:::dddd"""eeeee[ccc[eeeeegggggggcccpppppppccc]ggggggg22eeeeeccc4444eeeee22dddd:::::::::eeeeemmmmeeeee::FFFFFF::::::ffffffooooooff	chr19:33203201-33203465(+)$1	264	118	253	230.8823
a]gggggggdddd[ccc[ggggggg!!ddddhhhhhhhh[bbpppppppbbhhhhhhhh55555dddd]gggggggcccdddd::::GGGGGGGBBYYBB}BBddddhhhhhhhh%%%%%%cccmmmmccc6666	chr21:45179969-45180232(+)$1	263	109	244	259.4117
ggggbb!!bb[eeeee!!hhhhhhhh[a[bbdddd"""ddddpppppppdddd22dddd4444bb]a]hhhhhhhheeeee]bb22bb]gggggggCCCYYCCCDDDDZZZDDDD::::::cccmmmmccc::::	chrX:73808166-73808453(-)$1	287	151	286	257.9411
ddllldddd]dddd22ffffffbb[ggggggg[ccc[ccclllccccccggggggg]bb:::ggggggglllgggggggHHHHHHHHYYCCC:cccqqqqqqqqccchhhhhhhh%%%%%%cccmmmmccc6666	chr19:973018-973287(+)$1	269	115	250	231.1764
hhhhhhhlllhhhhhhhh::::dddd[eeeeeffffff[cccpppppppcccffffff]eeeee]dddd::ddddvvvvvvvvvvvvvdddd:eeeeemmmmeeeee:CCCYYHHHHHHHHCCC}BB}DDDD:::	chr1:6582805-6583048(-)$1	243	108	243	274.9999
hhhhhhhlllhhhhhhhh::::bb[gggggggggggggg[bbpppppppbbggggggg22gggggggbb:::ccc[bbmmmmbb]cccdddd[eeeeemmmmeeeee]dddd:::FFFFFF}ACCCYYBB}DDDD	chr1:21070008-21070230(-)$1	222	80	215	203.5294
fff22ffffff:EEEEEYYBBCCCEEEEE::::ffffff[dddd$$$$$bbnnnnnbb55555ddddffffffiiiiiiiii[dddd####bbmmmmbb55555dddd]iiiiiiiii:dddd[cccoooooocc	chr11:65764639-65764905(-)$1	266	111	246	250.8823
hhhhhhhlllhhhhhhhh::::dddd[eeeeeggggggg[bbpppppppbbggggggg22eeeeedddd:::DDDDGGGGGGG::::::::::::::::::::::::hhhhhhhh%%%%%%bboooooobb6666	chr5:36183280-36183537(+)$1	257	109	244	260.8823
dddd!!eeeee"""ggggggg!!bb[ggggggg!!ffffff[apppppppa]ffffff22gggggggbbggggggg333eeeee22dddd:::ffffff!!ammmma22ffffff:::DDDDYYEEEEEYYCCC:	chr11:9303783-9304021(-)$1	238	100	235	219.7058
hhhhhhhhlllhhhhhhhh::::ccc[ddddgggggggbb[bbmmmmbbbb]ggggggg22ddddcccBBYYGGGGGGG}BBffffff$$$$$eeeeemmmmeeeee55555ffffff:A}FFFFFF~~~~BBBB	chr11:61133852-61134111(+)$1	259	108	243	221.7647
dddd!!eeeee"""ggggggg!!bb[ggggggg!!ffffff[apppppppa]ffffff22gggggggbbggggggg333eeeee22dddd:::ffffff!!ammmma22ffffff:::DDDDYYEEEEE?????G	chr11:9303752-9303983(-)$1	231	62	197	219.7058
ffbb[a!!eeeee"""ccc"""dddd[ddddeeeee[ddddoooooodddd333eeeee22dddddddd22ccc55555eeeee22a]bb:ddddccc!!eeeeeooooooeeeeeccc]ddddcccpppppppc	chr22:21304646-21304862(+)$1	216	76	211	230.5882
[bbccc!!eeeee!!bb!!ccc[bb[eeeeedddd[bbbb[aooooooabb]bb]dddd22eeeee333bb]ccc22bbeeeee22ccc]bb]eeeee:::::EEEEEggggggg%%%%%%cccmmmmccc6666	chr14:102231827-102232080(+)$1	253	98	233	248.5294
J:ccc"""eeeee[bb!!dddddddd[eeeeeccc[bbcccpppppppccc]bb]ccc]eeeee]dddd333dddd]bbeeeee333ccc::::ddddmmmmdddd:hhhhhhhh%%%%%%cccmmmmccc6666	chr17:29222346-29222618(+)$1	272	97	232	247.3529
CC{DDDDccc[iiiiiiiiibbpppppppbb]iiiiiiiii]ccc:::ddddooooooddddDDDD}CCC}DDDDYYDDDDggggggg[dddd[ddddmmmmdddddddd22ggggggg::bb[eeeeemmmmee	chr11:117039438-117039691(+)$1	253	89	224	242.9411
iiiiii::dddd!!bb!!ccc[dddd[eeeeeffffffbbrrrrrrrrrbb]ffffff22eeeeedddd4444ccc]bb]dddd::::dddd[ffffff!!ammmma22ffffff4444dddd:FFFFFFYYEEE	chr12:133348986-133349236(-)$1	250	110	245	260.5882

#DB
).))))))(((((.((...((.(((.((((((((((((..((.......)).)))))))..)))))...))).))..)))))))...)))))))((((....)))).((((((((......(((....)))....	chr3:10142982-10143239(+)$1	1	108	243	258.8235
))))))...((((...(((((.(((.(((((((((((((((.......))).)))))))..))))))))....)))))..)))).........(((((....)))))..))))))......((((((......))	chr19:33203201-33203465(+)$1	1	118	253	230.8823
).)))))))((((.(((.(((((((..((((((((((((.((.......)))))))))).....)))).))))))))))))))....)))))))))..)).))((((((((((((......(((....)))....	chr21:45179969-45180232(+)$1	1	109	244	259.4117
((((((..((.(((((..((((((((.(.((((((...((((.......))))..))))....)).).))))))))))))).))..)).))))))))))..)))))))...))))......(((....)))....	chrX:73808166-73808453(-)$1	1	151	286	257.9411
((...)))).))))..))))))((.(((((((.(((.(((...))))))))))))).))...(((((((...)))))))))))))))..))).(((........)))((((((((......(((....)))....	chr19:973018-973287(+)$1	1	115	250	231.1764
(((((((...))))))))....((((.(((((((((((.(((.......))))))))).))))).))))..((((.............)))).(((((....))))).)))..))))))))))).)).))))...	chr1:6582805-6583048(-)$1	1	108	243	274.9999
(((((((...))))))))....((.((((((((((((((.((.......)))))))))..)))))))))...(((.((....)).)))((((.(((((....))))).))))...)))))).))))..)).))))	chr1:21070008-21070230(-)$1	1	80	215	203.5294
)))..)))))).)))))..))))))))))....((((((.((((.....((.....)).....))))))))))(((((((((.((((....((....)).....)))).))))))))).((((.(((......))	chr11:65764639-65764905(-)$1	1	111	246	250.8823
(((((((...))))))))....((((.((((((((((((.((.......)))))))))..)))))))))...)))))))))))........................((((((((......((......))....	chr5:36183280-36183537(+)$1	1	109	244	260.8823
((((..(((((...(((((((..((.(((((((..((((((.(.......).))))))..))))))))))))))))...)))))..))))...((((((..(....)..))))))...))))..)))))..))).	chr11:9303783-9304021(-)$1	1	100	235	219.7058
((((((((...))))))))....(((.(((((((((((((.((....)))).)))))))..)))))))))..))))))).))((((((.....(((((....))))).....)))))).).))))))....))))	chr11:61133852-61134111(+)$1	1	108	243	221.7647
((((..(((((...(((((((..((.(((((((..((((((.(.......).))))))..))))))))))))))))...)))))..))))...((((((..(....)..))))))...))))..))))).....)	chr11:9303752-9303983(-)$1	1	62	197	219.7058
))((.(..(((((...(((...((((.(((((((((.((((......))))...)))))..))))))))..))).....)))))..).)).(((((((..(((((......)))))))).))))(((.......)	chr22:21304646-21304862(+)$1	1	76	211	230.5882
.(((((..(((((..((..(((.((.(((((((((.((((.(......))).)).))))..)))))...)).)))..)))))))..))).)).))))).....)))))(((((((......(((....)))....	chr14:102231827-102232080(+)$1	1	98	233	248.5294
(.(((...(((((.((..((((((((.((((((((.(((((.......))).)).))).))))).))))...)))).)))))))...)))....((((....)))).((((((((......(((....)))....	chr17:29222346-29222618(+)$1	1	97	232	247.3529
((.(((((((.(((((((((((.......)).))))))))).)))...((((......)))))))).))).))))..))))(((((((.((((.((((....))))))))..)))))))..((.(((((....))	chr11:117039438-117039691(+)$1	1	89	224	242.9411
))))))..((((..((..(((.((((.(((((((((((((.........)).))))))..)))))))))....))).)).))))....((((.((((((..(....)..))))))....)))).))))))..)))	chr12:133348986-133349236(-)$1	1	110	245	260.5882

#PSSM
a : 0.64	g : 0.35	
c : 0.52	g : 0.23	u : 0.17	a : 0.05	
a : 0.52	g : 0.29	c : 0.11	u : 0.05	
g : 0.70	u : 0.17	a : 0.11	
a : 0.47	u : 0.29	g : 0.17	c : 0.05	
g : 0.70	a : 0.17	c : 0.11	
u : 0.70	a : 0.11	c : 0.11	g : 0.05	
c : 0.58	u : 0.35	g : 0.05	
u : 0.70	c : 0.17	g : 0.11	
c : 0.58	u : 0.35	a : 0.05	
g : 0.47	u : 0.29	a : 0.11	c : 0.11	
c : 0.70	g : 0.29	
u : 0.82	c : 0.11	a : 0.05	
c : 0.52	u : 0.29	g : 0.17	
u : 0.58	g : 0.23	c : 0.17	
g : 0.58	c : 0.17	a : 0.11	u : 0.11	
u : 0.58	g : 0.17	c : 0.17	a : 0.05	
c : 0.52	u : 0.41	a : 0.05	
a : 0.47	g : 0.35	u : 0.11	c : 0.05	
c : 0.76	g : 0.23	
c : 0.76	g : 0.17	u : 0.05	
c : 0.94	a : 0.05	
a : 0.70	u : 0.29	
g : 1.00	
g : 0.94	u : 0.05	
c : 0.70	a : 0.23	g : 0.05	
u : 0.76	g : 0.17	c : 0.05	
g : 0.82	u : 0.17	
g : 0.94	a : 0.05	
a : 0.70	g : 0.23	c : 0.05	
g : 0.88	a : 0.11	
u : 0.88	g : 0.11	
g : 0.88	u : 0.11	
c : 0.88	g : 0.11	
a : 0.88	c : 0.11	
g : 0.76	a : 0.23	
u : 1.00	
g : 1.00	
g : 0.94	c : 0.05	
u : 0.52	c : 0.35	a : 0.11	
g : 0.76	c : 0.11	a : 0.11	
u : 0.52	c : 0.47	
g : 0.70	a : 0.29	
a : 0.82	g : 0.11	c : 0.05	
u : 1.00	
c : 0.94	a : 0.05	
u : 1.00	
c : 0.76	u : 0.23	
g : 0.88	a : 0.05	c : 0.05	
g : 0.94	c : 0.05	
c : 1.00	
u : 1.00	
c : 0.94	u : 0.05	
a : 0.94	c : 0.05	
c : 0.94	g : 0.05	
u : 1.00	
g : 1.00	
c : 0.94	u : 0.05	
a : 1.00	
a : 0.88	g : 0.11	
c : 0.58	a : 0.23	g : 0.11	u : 0.05	
c : 0.88	u : 0.11	
u : 1.00	
c : 0.82	u : 0.11	g : 0.05	
c : 0.88	u : 0.11	
g : 0.64	a : 0.35	
c : 0.94	u : 0.05	
c : 0.88	u : 0.11	
u : 1.00	
c : 0.94	a : 0.05	
c : 1.00	
c : 0.52	u : 0.47	
g : 0.58	a : 0.41	
g : 0.88	a : 0.11	
g : 1.00	
u : 1.00	
u : 0.94	g : 0.05	
c : 0.94	u : 0.05	
a : 0.94	c : 0.05	
a : 0.88	c : 0.05	u : 0.05	
g : 0.94	a : 0.05	
c : 0.70	u : 0.29	
g : 0.76	a : 0.17	c : 0.05	
a : 0.94	g : 0.05	
u : 0.94	c : 0.05	
u : 0.94	c : 0.05	
c : 0.94	a : 0.05	
u : 1.00	
c : 1.00	
c : 0.88	a : 0.05	u : 0.05	
u : 0.94	c : 0.05	
g : 0.88	a : 0.05	c : 0.05	
c : 0.82	g : 0.11	u : 0.05	
c : 1.00	
u : 0.82	c : 0.17	
c : 1.00	
a : 1.00	
g : 1.00	
c : 0.94	u : 0.05	
c : 0.94	u : 0.05	
u : 1.00	
c : 1.00	
c : 0.88	u : 0.11	
u : 0.52	c : 0.41	g : 0.05	
g : 0.82	a : 0.17	
a : 1.00	
g : 0.88	c : 0.05	a : 0.05	
u : 1.00	
a : 0.94	u : 0.05	
g : 0.94	c : 0.05	
c : 0.94	g : 0.05	
u : 0.94	g : 0.05	
g : 0.88	u : 0.11	
g : 0.94	c : 0.05	
g : 0.94	c : 0.05	
a : 0.94	u : 0.05	
u : 0.64	c : 0.29	a : 0.05	
u : 0.88	g : 0.05	c : 0.05	
a : 0.94	g : 0.05	
c : 0.88	u : 0.05	g : 0.05	
a : 0.94	g : 0.05	
g : 0.94	c : 0.05	
g : 1.00	
c : 0.82	u : 0.17	
g : 0.58	a : 0.35	u : 0.05	
c : 0.52	u : 0.47	
g : 0.52	a : 0.29	c : 0.17	
c : 0.52	u : 0.47	
g : 0.70	a : 0.29	
c : 0.94	a : 0.05	
c : 0.94	a : 0.05	
a : 0.88	c : 0.11	
c : 0.94	a : 0.05	
c : 0.88	a : 0.05	u : 0.05	
a : 0.70	g : 0.17	c : 0.05	u : 0.05	

#score	4119.705882352934
#seq	17
#width	135
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_transcript_m2_run2.nuc.txt

#NT
UGGG	chrX:135961254-135961461(-)$1	207	7	11	11.9999
UGGG	chr19:2270112-2270385(+)$1	273	40	44	11.9999
UGGG	chr14:70238205-70238473(+)$1	268	75	79	11.9999
UGGG	chr1:109642767-109642973(+)$1	206	69	73	11.9999
UGGG	chr2:220403042-220403331(+)$1	289	69	73	11.9999
uggg	chr20:26190355-26190580(-)$1	225	137	141	11.9999
UGGG	chr16:2820991-2821295(+)$1	304	85	89	11.9999
UGGG	chr19:3053628-3053889(-)$1	261	95	99	11.9999
UGGG	chr6:111136056-111136365(-)$1	309	11	15	11.9999
uggg	chr9:100777545-100777750(+)$1	205	113	117	11.9999
uggg	chr17:34171562-34171871(+)$1	309	9	13	11.9999
UGGG	chr7:98479336-98479610(+)$1	274	82	86	11.9999
UGGG	chr1:109642773-109642982(+)$1	209	63	67	11.9999
UGGG	chr11:62300140-62300427(-)$1	287	65	69	11.9999
UGGG	chr11:93454731-93455003(+)$1	272	188	192	11.9999
UGGG	chr11:82869286-82869527(+)$1	241	0	4	11.9999
UGGG	chr7:158424080-158424350(-)$1	270	104	108	11.9999
UGGG	chr11:62284904-62285131(-)$1	227	84	88	11.9999
uggg	chr7:119437851-119438198(-)$1	347	259	263	11.9999
UGGG	chr16:28848265-28848530(+)$1	265	20	24	11.9999
UGGG	chrX:152956626-152956833(+)$1	207	39	43	11.9999
uggg	chr11:17097255-17097470(-)$1	215	115	119	11.9999
UGGG	chr3:37366594-37366851(+)$1	257	31	35	11.9999
UGGG	chr5:177022806-177023059(+)$1	253	28	32	11.9999
uggg	chr19:49611445-49611716(+)$1	271	122	126	11.9999
uggg	chr17:18965184-18965414(+)$1	230	221	225	11.9999
UGGG	chr11:62294507-62294760(-)$1	253	140	144	11.9999
UGGG	chr17:34171748-34172015(+)$1	267	243	247	11.9999
uggg	chr7:119432970-119433228(-)$1	258	146	150	11.9999
UGGG	chr6:43745345-43745602(+)$1	257	58	62	11.9999
UGGG	chr9:100774602-100774855(+)$1	253	153	157	11.9999
UGGG	chr2:232319808-232320076(-)$1	268	41	45	11.9999
UGGG	chrX:135961270-135961484(-)$1	214	30	34	11.9999
UGGG	chr20:47896813-47897021(+)$1	208	161	165	11.9999
uggg	chr2:97559878-97560136(-)$1	258	1	5	11.9999
UGGG	chr19:10406575-10406898(+)$1	323	23	27	11.9999
UGGG	chr7:45144352-45144588(-)$1	236	29	33	11.9999
UGGG	chr10:70101631-70101873(+)$1	242	134	138	11.9999
uggg	chr17:18965303-18965508(+)$1	205	102	106	11.9999
UGGG	chr11:62285720-62285971(-)$1	251	101	105	11.9999
UGGG	chr9:134083156-134083434(+)$1	278	53	57	11.9999
UGGG	chr1:226349133-226349467(-)$1	334	8	12	11.9999
uggg	chr17:19093316-19093602(-)$1	286	225	229	11.9999
UGGG	chr1:150192890-150193164(-)$1	274	203	207	11.9999
UGGG	chr2:232321052-232321285(-)$1	233	182	186	11.9999
UGGG	chr16:28847428-28847693(+)$1	265	85	89	11.9999
uggg	chr11:17097232-17097454(-)$1	222	99	103	11.9999
uggg	chr6:34664399-34664668(-)$1	269	16	20	11.9999
UGGG	chr16:70571843-70572100(+)$1	257	169	173	11.9999
UGGG	chr4:39699762-39700068(+)$1	306	285	289	11.9999
UGGG	chrX:135961261-135961470(-)$1	209	16	20	11.9999
uggg	chr17:18965308-18965550(+)$1	242	97	101	11.9999
UGGG	chr16:89033385-89033620(-)$1	235	43	47	11.9999
UGGG	chr11:93454813-93455057(+)$1	244	106	110	11.9999
UGGG	chr11:62284257-62284578(-)$1	321	98	102	11.9999
UGGG	chr17:56409246-56409457(-)$1	211	21	25	11.9999
UGGG	chr1:155288122-155288378(+)$1	256	95	99	11.9999
UGGG	chr20:26189854-26190127(-)$1	273	101	105	11.9999
UGGG	chr9:100773530-100773772(+)$1	242	192	196	11.9999
UGGG	chr20:26190112-26190353(-)$1	241	49	53	11.9999
uggg	chr11:17097223-17097432(-)$1	209	77	81	11.9999
UGGG	chr19:2270033-2270312(+)$1	279	0	4	11.9999
UGGG	chr1:173835915-173836166(-)$1	251	46	50	11.9999
uggg	chr16:2820156-2820430(+)$1	274	21	25	11.9999
UGGG	chr17:27050361-27050610(+)$1	249	84	88	11.9999
uggg	chr1:90493039-90493329(+)$1	290	6	10	11.9999
uggg	chr17:19015760-19016030(-)$1	270	262	266	11.9999
UGGG	chr17:56408718-56408967(-)$1	249	42	46	11.9999
UGGG	chr11:62300405-62300651(-)$1	246	37	41	11.9999
UGGG	chr10:70101465-70101709(+)$1	244	83	87	11.9999
UGGG	chr2:101889380-101889595(-)$1	215	146	150	11.9999
UGGG	chr8:142139017-142139244(+)$1	227	184	188	11.9999
UGGG	chr7:97481370-97481639(-)$1	269	116	120	11.9999
UGGG	chr12:6619588-6619817(+)$1	229	137	141	11.9999
UGGG	chr11:62300306-62300605(-)$1	299	63	67	11.9999
uggg	chr17:19091313-19091544(+)$1	231	196	200	11.9999
UGGG	chr7:150067360-150067652(+)$1	292	57	61	11.9999
uggg	chr4:770460-770709(-)$1	249	7	11	11.9999

#otherMatches

#Struct PSSM
22gg	chr11:62286001-62286236(-)$1	235	97	101	11.9999
eeee	chrX:135961254-135961461(-)$1	207	7	11	11.9999
hhhm	chr19:2270112-2270385(+)$1	273	40	44	11.9999
eeee	chr14:70238205-70238473(+)$1	268	75	79	11.9999
3fff	chr1:109642767-109642973(+)$1	206	69	73	11.9999
DKKH	chr2:220403042-220403331(+)$1	289	69	73	11.9999
ff::	chr20:26190355-26190580(-)$1	225	137	141	11.9999
hhhh	chr16:2820991-2821295(+)$1	304	85	89	11.9999
DDDD	chr19:3053628-3053889(-)$1	261	95	99	11.9999
EEEE	chr6:111136056-111136365(-)$1	309	11	15	11.9999
22hh	chr9:100777545-100777750(+)$1	205	113	117	11.9999
::::	chr17:34171562-34171871(+)$1	309	9	13	11.9999
qqqq	chr7:98479336-98479610(+)$1	274	82	86	11.9999
3fff	chr1:109642773-109642982(+)$1	209	63	67	11.9999
gg[g	chr11:62300140-62300427(-)$1	287	65	69	11.9999
EEEc	chr11:93454731-93455003(+)$1	272	188	192	11.9999
:DDD	chr11:82869286-82869527(+)$1	241	0	4	11.9999
oooo	chr7:158424080-158424350(-)$1	270	104	108	11.9999
JJJJ	chr11:62284904-62285131(-)$1	227	84	88	11.9999
ffff	chr7:119437851-119438198(-)$1	347	259	263	11.9999
====	chr16:28848265-28848530(+)$1	265	20	24	11.9999
HHHH	chrX:152956626-152956833(+)$1	207	39	43	11.9999
pccc	chr11:17097255-17097470(-)$1	215	115	119	11.9999
qddd	chr3:37366594-37366851(+)$1	257	31	35	11.9999
HHHd	chr5:177022806-177023059(+)$1	253	28	32	11.9999
b"""	chr19:49611445-49611716(+)$1	271	122	126	11.9999
nfff	chr17:18965184-18965414(+)$1	230	221	225	11.9999
==pp	chr11:62294507-62294760(-)$1	253	140	144	11.9999
CZZZ	chr17:34171748-34172015(+)$1	267	243	247	11.9999
@EEE	chr7:119432970-119433228(-)$1	258	146	150	11.9999
iiii	chr6:43745345-43745602(+)$1	257	58	62	11.9999
ff[b	chr9:100774602-100774855(+)$1	253	153	157	11.9999
oooo	chr2:232319808-232320076(-)$1	268	41	45	11.9999
eeee	chrX:135961270-135961484(-)$1	214	30	34	11.9999
eeee	chr20:47896813-47897021(+)$1	208	161	165	11.9999
::DD	chr2:97559878-97560136(-)$1	258	1	5	11.9999
dddd	chr19:10406575-10406898(+)$1	323	23	27	11.9999
b"""	chr7:45144352-45144588(-)$1	236	29	33	11.9999
d]a]	chr10:70101631-70101873(+)$1	242	134	138	11.9999
nfff	chr17:18965303-18965508(+)$1	205	102	106	11.9999
bqqq	chr11:62285720-62285971(-)$1	251	101	105	11.9999
b!!b	chr9:134083156-134083434(+)$1	278	53	57	11.9999
EEEK	chr1:226349133-226349467(-)$1	334	8	12	11.9999
nfff	chr17:19093316-19093602(-)$1	286	225	229	11.9999
eee8	chr1:150192890-150193164(-)$1	274	203	207	11.9999
qddd	chr2:232321052-232321285(-)$1	233	182	186	11.9999
cc[b	chr16:28847428-28847693(+)$1	265	85	89	11.9999
pccc	chr11:17097232-17097454(-)$1	222	99	103	11.9999
nnnd	chr6:34664399-34664668(-)$1	269	16	20	11.9999
====	chr16:70571843-70572100(+)$1	257	169	173	11.9999
CZZZ	chr4:39699762-39700068(+)$1	306	285	289	11.9999
:DDD	chrX:135961261-135961470(-)$1	209	16	20	11.9999
nfff	chr17:18965308-18965550(+)$1	242	97	101	11.9999
GGGG	chr16:89033385-89033620(-)$1	235	43	47	11.9999
EEEc	chr11:93454813-93455057(+)$1	244	106	110	11.9999
^^^^	chr11:62284257-62284578(-)$1	321	98	102	11.9999
feee	chr17:56409246-56409457(-)$1	211	21	25	11.9999
:ggg	chr1:155288122-155288378(+)$1	256	95	99	11.9999
|CCC	chr20:26189854-26190127(-)$1	273	101	105	11.9999
hhhh	chr9:100773530-100773772(+)$1	242	192	196	11.9999
hhhh	chr20:26190112-26190353(-)$1	241	49	53	11.9999
pccc	chr11:17097223-17097432(-)$1	209	77	81	11.9999
::::	chr19:2270033-2270312(+)$1	279	0	4	11.9999
KEEE	chr1:173835915-173836166(-)$1	251	46	50	11.9999
ee!!	chr16:2820156-2820430(+)$1	274	21	25	11.9999
III:	chr17:27050361-27050610(+)$1	249	84	88	11.9999
::::	chr1:90493039-90493329(+)$1	290	6	10	11.9999
nfff	chr17:19015760-19016030(-)$1	270	262	266	11.9999
oeee	chr17:56408718-56408967(-)$1	249	42	46	11.9999
==DD	chr11:62300405-62300651(-)$1	246	37	41	11.9999
::::	chr10:70101465-70101709(+)$1	244	83	87	11.9999
nddd	chr2:101889380-101889595(-)$1	215	146	150	11.9999
:fff	chr8:142139017-142139244(+)$1	227	184	188	11.9999
iiii	chr7:97481370-97481639(-)$1	269	116	120	11.9999
gggg	chr12:6619588-6619817(+)$1	229	137	141	11.9999
ffff	chr11:62300306-62300605(-)$1	299	63	67	11.9999
nfff	chr17:19091313-19091544(+)$1	231	196	200	11.9999
[ddd	chr7:150067360-150067652(+)$1	292	57	61	11.9999
nnnn	chr4:770460-770709(-)$1	249	7	11	11.9999

#DB
..))	chr11:62286001-62286236(-)$1	1	97	101	11.9999
((((	chrX:135961254-135961461(-)$1	1	7	11	11.9999
(((.	chr19:2270112-2270385(+)$1	1	40	44	11.9999
))))	chr14:70238205-70238473(+)$1	1	75	79	11.9999
.)))	chr1:109642767-109642973(+)$1	1	69	73	11.9999
(..(	chr2:220403042-220403331(+)$1	1	69	73	11.9999
))..	chr20:26190355-26190580(-)$1	1	137	141	11.9999
))))	chr16:2820991-2821295(+)$1	1	85	89	11.9999
))))	chr19:3053628-3053889(-)$1	1	95	99	11.9999
((((	chr6:111136056-111136365(-)$1	1	11	15	11.9999
..))	chr9:100777545-100777750(+)$1	1	113	117	11.9999
....	chr17:34171562-34171871(+)$1	1	9	13	11.9999
....	chr7:98479336-98479610(+)$1	1	82	86	11.9999
.)))	chr1:109642773-109642982(+)$1	1	63	67	11.9999
((.(	chr11:62300140-62300427(-)$1	1	65	69	11.9999
((((	chr11:93454731-93455003(+)$1	1	188	192	11.9999
.(((	chr11:82869286-82869527(+)$1	1	0	4	11.9999
....	chr7:158424080-158424350(-)$1	1	104	108	11.9999
((((	chr11:62284904-62285131(-)$1	1	84	88	11.9999
((((	chr7:119437851-119438198(-)$1	1	259	263	11.9999
((((	chr16:28848265-28848530(+)$1	1	20	24	11.9999
((((	chrX:152956626-152956833(+)$1	1	39	43	11.9999
.)))	chr11:17097255-17097470(-)$1	1	115	119	11.9999
.)))	chr3:37366594-37366851(+)$1	1	31	35	11.9999
((((	chr5:177022806-177023059(+)$1	1	28	32	11.9999
(...	chr19:49611445-49611716(+)$1	1	122	126	11.9999
.)))	chr17:18965184-18965414(+)$1	1	221	225	11.9999
((..	chr11:62294507-62294760(-)$1	1	140	144	11.9999
)...	chr17:34171748-34172015(+)$1	1	243	247	11.9999
.)))	chr7:119432970-119433228(-)$1	1	146	150	11.9999
))))	chr6:43745345-43745602(+)$1	1	58	62	11.9999
((.(	chr9:100774602-100774855(+)$1	1	153	157	11.9999
....	chr2:232319808-232320076(-)$1	1	41	45	11.9999
((((	chrX:135961270-135961484(-)$1	1	30	34	11.9999
))))	chr20:47896813-47897021(+)$1	1	161	165	11.9999
..((	chr2:97559878-97560136(-)$1	1	1	5	11.9999
))))	chr19:10406575-10406898(+)$1	1	23	27	11.9999
(...	chr7:45144352-45144588(-)$1	1	29	33	11.9999
).).	chr10:70101631-70101873(+)$1	1	134	138	11.9999
.)))	chr17:18965303-18965508(+)$1	1	102	106	11.9999
(...	chr11:62285720-62285971(-)$1	1	101	105	11.9999
(..(	chr9:134083156-134083434(+)$1	1	53	57	11.9999
(((.	chr1:226349133-226349467(-)$1	1	8	12	11.9999
.)))	chr17:19093316-19093602(-)$1	1	225	229	11.9999
))).	chr1:150192890-150193164(-)$1	1	203	207	11.9999
.)))	chr2:232321052-232321285(-)$1	1	182	186	11.9999
((.(	chr16:28847428-28847693(+)$1	1	85	89	11.9999
.)))	chr11:17097232-17097454(-)$1	1	99	103	11.9999
...)	chr6:34664399-34664668(-)$1	1	16	20	11.9999
((((	chr16:70571843-70572100(+)$1	1	169	173	11.9999
)...	chr4:39699762-39700068(+)$1	1	285	289	11.9999
.(((	chrX:135961261-135961470(-)$1	1	16	20	11.9999
.)))	chr17:18965308-18965550(+)$1	1	97	101	11.9999
((((	chr16:89033385-89033620(-)$1	1	43	47	11.9999
((((	chr11:93454813-93455057(+)$1	1	106	110	11.9999
....	chr11:62284257-62284578(-)$1	1	98	102	11.9999
((((	chr17:56409246-56409457(-)$1	1	21	25	11.9999
.(((	chr1:155288122-155288378(+)$1	1	95	99	11.9999
.)))	chr20:26189854-26190127(-)$1	1	101	105	11.9999
))))	chr9:100773530-100773772(+)$1	1	192	196	11.9999
))))	chr20:26190112-26190353(-)$1	1	49	53	11.9999
.)))	chr11:17097223-17097432(-)$1	1	77	81	11.9999
....	chr19:2270033-2270312(+)$1	1	0	4	11.9999
.(((	chr1:173835915-173836166(-)$1	1	46	50	11.9999
((..	chr16:2820156-2820430(+)$1	1	21	25	11.9999
(((.	chr17:27050361-27050610(+)$1	1	84	88	11.9999
....	chr1:90493039-90493329(+)$1	1	6	10	11.9999
.)))	chr17:19015760-19016030(-)$1	1	262	266	11.9999
.)))	chr17:56408718-56408967(-)$1	1	42	46	11.9999
))((	chr11:62300405-62300651(-)$1	1	37	41	11.9999
....	chr10:70101465-70101709(+)$1	1	83	87	11.9999
.)))	chr2:101889380-101889595(-)$1	1	146	150	11.9999
.(((	chr8:142139017-142139244(+)$1	1	184	188	11.9999
))))	chr7:97481370-97481639(-)$1	1	116	120	11.9999
))))	chr12:6619588-6619817(+)$1	1	137	141	11.9999
((((	chr11:62300306-62300605(-)$1	1	63	67	11.9999
.)))	chr17:19091313-19091544(+)$1	1	196	200	11.9999
.(((	chr7:150067360-150067652(+)$1	1	57	61	11.9999
....	chr4:770460-770709(-)$1	1	7	11	11.9999

#PSSM
U : 0.74	u : 0.25	
G : 0.74	g : 0.25	
G : 0.74	g : 0.25	
G : 0.74	g : 0.25	

#score	947.9999999999999
#seq	79
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_transcript_m1_run1.nuc.txt

#NT
UUUGUGUUUUUU	chr6:4064914-4065178(+)$1	264	12	24	21.0847
UUUUUCCUUUUU	chr1:173962131-173962384(-)$1	253	87	99	24.5593
UUUUUCUUUUUC	chr3:32568259-32568511(-)$1	252	89	101	24.8135
UUUUUCUUCUCU	chr6:26138166-26138435(+)$1	269	94	106	21.3389
UUUUUGUUUUCU	chr13:33095445-33095712(-)$1	267	97	109	22.1016
UUUAUCUUCUUU	chr2:191761187-191761472(+)$1	285	97	109	20.3220
UUUUUCUUUUUA	chr12:123078727-123078976(+)$1	249	76	88	24.8135
uuuuuuuuuuuu	chr2:196600441-196600690(+)$1	249	88	100	25.9152
UUUUUCUUUUCU	chrX:135958679-135958926(-)$1	247	87	99	25.4915
UUUUUCUUUGCU	chr9:134019657-134019934(+)$1	277	121	133	21.4237
UUUUUCUUUUCU	chrX:77380691-77380968(+)$1	277	85	97	25.4915
UUUUUCCUUUUU	chr16:28841028-28841293(+)$1	265	84	96	24.5593
UUUUUCUUUUCA	chr7:140482813-140483078(-)$1	265	100	112	21.5084
UUUUUCUUUGCU	chr9:134019550-134019813(+)$1	263	228	240	21.4237
UUUUUAUUUUUU	chr19:54972240-54972488(+)$1	248	46	58	25.4915
UUUGUCUUUUAU	chr9:104169401-104169653(+)$1	252	232	244	20.6610
UUUUUAUUUCUU	chr5:95103820-95104069(+)$1	249	83	95	21.4237
UUUCUCUUCUUU	chr5:140967682-140967946(-)$1	264	89	101	20.3220
uuuuuuuuuuuu	chr10:126476151-126476412(-)$1	261	95	107	25.9152
UUCUUCUUUUUU	chr1:167984915-167985175(+)$1	260	18	30	24.2203
UUUUUCUGUUUC	chr7:140534354-140534657(-)$1	303	68	80	20.3220
UUUCUCCUUUUU	chr1:154242879-154243128(+)$1	249	91	103	20.2372
uuuuucuuuugu	chr11:2993505-2993758(-)$1	253	78	90	24.9830
uuuuucuuuuuu	chr16:71785297-71785590(-)$1	293	211	223	28.7966
UUUAUCUUGUUU	chr3:141272597-141272840(+)$1	243	47	59	20.1525
UUUUCCuuuuuu	chr6:116598928-116599176(-)$1	248	73	85	24.5593
UUUUUCUUUUUC	chr7:65225293-65225556(+)$1	263	92	104	24.8135
UAAUUCUUUUUU	chr3:187462939-187463178(-)$1	239	89	101	20.2372
UUUUUCUUUUUU	chr2:118860660-118860914(+)$1	254	92	104	28.7966
GUUUUCUUUUUA	chr3:195801172-195801425(-)$1	253	74	86	20.0677
UUAUUCUUUUUU	chr21:22856562-22856839(+)$1	277	88	100	24.3050
UUUUUUUUUCUU	chr10:70515812-70516039(+)$1	227	87	99	21.8474
UUUUUUUUUUUU	chr2:135703561-135703821(+)$1	260	89	101	25.9152
UGUUUCUUUUAU	chr21:35475665-35475936(+)$1	271	54	66	20.8305
uuuuuuuuuuuu	chr8:30919840-30920099(+)$1	259	85	97	25.9152
AUUUUCUAUUUU	chr9:86585685-86585935(-)$1	250	79	91	19.4745
UUUUGCUUUUUA	chr5:134109245-134109502(+)$1	257	91	103	20.5762
UUUUUCUUUAUU	chr5:72195656-72195920(+)$1	264	89	101	24.6440
UUUUUUUCUUUU	chr6:34614440-34614689(-)$1	249	90	102	21.3389
UCUUCCUUUUUU	chr17:4579947-4580220(-)$1	273	88	100	20.4915
uuuuuguuuauu	chr16:2809855-2810076(+)$1	221	0	12	21.2542
UGUUGCUUUUUU	chr19:55517618-55517927(+)$1	309	141	153	20.4067
UUUUUCUUUUUU	chrX:13334591-13334855(+)$1	264	92	104	28.7966
UAUUUCUGUUUU	chr15:64041840-64042098(-)$1	258	90	102	20.2372
UUUUUCAUCUUU	chr18:2729170-2729421(+)$1	251	83	95	20.1525
UUUUUUUUUUUU	chr15:68434183-68434432(+)$1	249	28	40	25.9152
UUUUGCUUUUUU	chr16:277920-278195(-)$1	275	260	272	24.5593
UUUUUAUUUUUC	chr7:5752350-5752615(-)$1	265	61	73	21.5084
uuguuauuuuuu	chr3:121209109-121209369(-)$1	260	8	20	20.9152
UCUUUCUUUUUU	chr6:107774838-107775121(-)$1	283	109	121	24.7288
UUUUUCUUUCUU	chr11:62620486-62620698(-)$1	212	89	101	24.7288
uCUUUCCUUUUU	chr16:23502976-23503230(-)$1	254	89	101	20.4915
UUUUUCUUGUCU	chr6:32086509-32086769(-)$1	260	97	109	21.1694
UUUUUCUUUUUU	chr5:65454529-65454785(+)$1	256	7	19	28.7966
UUUUCCUUUGUU	chr11:12886263-12886512(+)$1	249	85	97	20.4915
uuuuucuuuuuu	chr1:222906335-222906547(+)$1	212	51	63	28.7966
UUUUUUUUUUUU	chr17:34151156-34151400(+)$1	244	89	101	25.9152
UAUUUCUUUUGU	chr18:12971034-12971295(+)$1	261	74	86	20.9152

#otherMatches

#Struct PSSM
::::::::::::	chr12:50152519-50152796(+)$1	277	82	94	25.9152
''ddddnnnnnd	chr6:4064914-4065178(+)$1	264	12	24	21.0847
^^^^^^^^^^^e	chr1:173962131-173962384(-)$1	253	87	99	24.5593
:::::JJJJJJJ	chr3:32568259-32568511(-)$1	252	89	101	24.8135
=========ggg	chr6:26138166-26138435(+)$1	269	94	106	21.3389
fffff%%%%%%e	chr13:33095445-33095712(-)$1	267	97	109	22.1016
:::ffffffmmm	chr2:191761187-191761472(+)$1	285	97	109	20.3220
=====:::eeee	chr12:123078727-123078976(+)$1	249	76	88	24.8135
::::::::::::	chr2:196600441-196600690(+)$1	249	88	100	25.9152
3dddd]dddd33	chrX:135958679-135958926(-)$1	247	87	99	25.4915
::::::::JJJJ	chr9:134019657-134019934(+)$1	277	121	133	21.4237
ddd]ddddCCC{	chrX:77380691-77380968(+)$1	277	85	97	25.4915
mmdddd::::::	chr16:28841028-28841293(+)$1	265	84	96	24.5593
::IIIIIIIII:	chr7:140482813-140483078(-)$1	265	100	112	21.5084
::::::::JJJJ	chr9:134019550-134019813(+)$1	263	228	240	21.4237
[===========	chr19:54972240-54972488(+)$1	248	46	58	25.4915
ttttttttttdd	chr9:104169401-104169653(+)$1	252	232	244	20.6610
eeee]eeeee::	chr5:95103820-95104069(+)$1	249	83	95	21.4237
::::::::::::	chr5:140967682-140967946(-)$1	264	89	101	20.3220
^^^^^^^^^^^^	chr10:126476151-126476412(-)$1	261	95	107	25.9152
zzzzzzzzzzzz	chr1:167984915-167985175(+)$1	260	18	30	24.2203
mmmmbb]eeeee	chr7:140534354-140534657(-)$1	303	68	80	20.3220
::::::::::::	chr1:154242879-154243128(+)$1	249	91	103	20.2372
:::EEEEEHHHH	chr11:2993505-2993758(-)$1	253	78	90	24.9830
^^^^^^^^^^^^	chr16:71785297-71785590(-)$1	293	211	223	28.7966
mggggggg4444	chr3:141272597-141272840(+)$1	243	47	59	20.1525
^^^^^^^^^^^^	chr6:116598928-116599176(-)$1	248	73	85	24.5593
22cccbb55555	chr7:65225293-65225556(+)$1	263	92	104	24.8135
::::::::::::	chr3:187462939-187463178(-)$1	239	89	101	20.2372
>>>>>>>>>>>b	chr2:118860660-118860914(+)$1	254	92	104	28.7966
eee88888888g	chr3:195801172-195801425(-)$1	253	74	86	20.0677
]bb999999999	chr21:22856562-22856839(+)$1	277	88	100	24.3050
iiiiiiiii:ff	chr10:70515812-70516039(+)$1	227	87	99	21.8474
>>>>>>>>>eee	chr2:135703561-135703821(+)$1	260	89	101	25.9152
KKEEEEE:::::	chr21:35475665-35475936(+)$1	271	54	66	20.8305
::::::::::::	chr8:30919840-30920099(+)$1	259	85	97	25.9152
zzzzzzzzzzzz	chr9:86585685-86585935(-)$1	250	79	91	19.4745
=========:::	chr5:134109245-134109502(+)$1	257	91	103	20.5762
::::::::::::	chr5:72195656-72195920(+)$1	264	89	101	24.6440
JJJJJJJJJJ}C	chr6:34614440-34614689(-)$1	249	90	102	21.3389
IIIIIIIIKKGG	chr17:4579947-4580220(-)$1	273	88	100	20.4915
:::::HHHHHHH	chr16:2809855-2810076(+)$1	221	0	12	21.2542
ggg''''''''b	chr19:55517618-55517927(+)$1	309	141	153	20.4067
:::eeeeennnn	chrX:13334591-13334855(+)$1	264	92	104	28.7966
eeffffff8888	chr15:64041840-64042098(-)$1	258	90	102	20.2372
cc]dddd22===	chr18:2729170-2729421(+)$1	251	83	95	20.1525
tttttttttttc	chr15:68434183-68434432(+)$1	249	28	40	25.9152
::::::::::::	chr16:277920-278195(-)$1	275	260	272	24.5593
c[eeeeeooooo	chr7:5752350-5752615(-)$1	265	61	73	21.5084
:DDDD{JJJJJJ	chr3:121209109-121209369(-)$1	260	8	20	20.9152
LJJJJJJJJJJJ	chr6:107774838-107775121(-)$1	283	109	121	24.7288
::::::gggggg	chr11:62620486-62620698(-)$1	212	89	101	24.7288
eeee[eeeee!!	chr16:23502976-23503230(-)$1	254	89	101	20.4915
d####dddd[cc	chr6:32086509-32086769(-)$1	260	97	109	21.1694
:::::::::::F	chr5:65454529-65454785(+)$1	256	7	19	28.7966
::::::::::::	chr11:12886263-12886512(+)$1	249	85	97	20.4915
::::::::::::	chr1:222906335-222906547(+)$1	212	51	63	28.7966
EEE::=======	chr17:34151156-34151400(+)$1	244	89	101	25.9152
:::::bb[hhhh	chr18:12971034-12971295(+)$1	261	74	86	20.9152

#DB
............	chr12:50152519-50152796(+)$1	1	82	94	25.9152
..((((.....)	chr6:4064914-4065178(+)$1	1	12	24	21.0847
...........)	chr1:173962131-173962384(-)$1	1	87	99	24.5593
.....(((((((	chr3:32568259-32568511(-)$1	1	89	101	24.8135
)))))))))(((	chr6:26138166-26138435(+)$1	1	94	106	21.3389
(((((......(	chr13:33095445-33095712(-)$1	1	97	109	22.1016
...((((((...	chr2:191761187-191761472(+)$1	1	97	109	20.3220
)))))...((((	chr12:123078727-123078976(+)$1	1	76	88	24.8135
............	chr2:196600441-196600690(+)$1	1	88	100	25.9152
.)))).))))..	chrX:135958679-135958926(-)$1	1	87	99	25.4915
........))))	chr9:134019657-134019934(+)$1	1	121	133	21.4237
))).))))(((.	chrX:77380691-77380968(+)$1	1	85	97	25.4915
..))))......	chr16:28841028-28841293(+)$1	1	84	96	24.5593
..(((((((((.	chr7:140482813-140483078(-)$1	1	100	112	21.5084
........))))	chr9:134019550-134019813(+)$1	1	228	240	21.4237
.(((((((((((	chr19:54972240-54972488(+)$1	1	46	58	25.4915
..........))	chr9:104169401-104169653(+)$1	1	232	244	20.6610
)))).)))))..	chr5:95103820-95104069(+)$1	1	83	95	21.4237
............	chr5:140967682-140967946(-)$1	1	89	101	20.3220
............	chr10:126476151-126476412(-)$1	1	95	107	25.9152
............	chr1:167984915-167985175(+)$1	1	18	30	24.2203
....)).)))))	chr7:140534354-140534657(-)$1	1	68	80	20.3220
............	chr1:154242879-154243128(+)$1	1	91	103	20.2372
...(((((((((	chr11:2993505-2993758(-)$1	1	78	90	24.9830
............	chr16:71785297-71785590(-)$1	1	211	223	28.7966
.)))))))....	chr3:141272597-141272840(+)$1	1	47	59	20.1525
............	chr6:116598928-116599176(-)$1	1	73	85	24.5593
..))))).....	chr7:65225293-65225556(+)$1	1	92	104	24.8135
............	chr3:187462939-187463178(-)$1	1	89	101	20.2372
...........)	chr2:118860660-118860914(+)$1	1	92	104	28.7966
)))........)	chr3:195801172-195801425(-)$1	1	74	86	20.0677
.)).........	chr21:22856562-22856839(+)$1	1	88	100	24.3050
))))))))).((	chr10:70515812-70516039(+)$1	1	87	99	21.8474
.........)))	chr2:135703561-135703821(+)$1	1	89	101	25.9152
..(((((.....	chr21:35475665-35475936(+)$1	1	54	66	20.8305
............	chr8:30919840-30920099(+)$1	1	85	97	25.9152
............	chr9:86585685-86585935(-)$1	1	79	91	19.4745
)))))))))...	chr5:134109245-134109502(+)$1	1	91	103	20.5762
............	chr5:72195656-72195920(+)$1	1	89	101	24.6440
)))))))))).)	chr6:34614440-34614689(-)$1	1	90	102	21.3389
((((((((..((	chr17:4579947-4580220(-)$1	1	88	100	20.4915
.....(((((((	chr16:2809855-2810076(+)$1	1	0	12	21.2542
(((........(	chr19:55517618-55517927(+)$1	1	141	153	20.4067
...(((((....	chrX:13334591-13334855(+)$1	1	92	104	28.7966
))))))))....	chr15:64041840-64042098(-)$1	1	90	102	20.2372
)).))))..)))	chr18:2729170-2729421(+)$1	1	83	95	20.1525
...........)	chr15:68434183-68434432(+)$1	1	28	40	25.9152
............	chr16:277920-278195(-)$1	1	260	272	24.5593
(.(((((.....	chr7:5752350-5752615(-)$1	1	61	73	21.5084
.((((.((((((	chr3:121209109-121209369(-)$1	1	8	20	20.9152
.(((((((((((	chr6:107774838-107775121(-)$1	1	109	121	24.7288
......((((((	chr11:62620486-62620698(-)$1	1	89	101	24.7288
((((.(((((..	chr16:23502976-23503230(-)$1	1	89	101	20.4915
(....((((.((	chr6:32086509-32086769(-)$1	1	97	109	21.1694
...........(	chr5:65454529-65454785(+)$1	1	7	19	28.7966
............	chr11:12886263-12886512(+)$1	1	85	97	20.4915
............	chr1:222906335-222906547(+)$1	1	51	63	28.7966
)))..(((((((	chr17:34151156-34151400(+)$1	1	89	101	25.9152
.....((.((((	chr18:12971034-12971295(+)$1	1	74	86	20.9152

#PSSM
U : 0.79	u : 0.16	G : 0.01	A : 0.01	
U : 0.71	u : 0.15	A : 0.05	C : 0.05	G : 0.03	
U : 0.79	u : 0.13	A : 0.03	C : 0.01	g : 0.01	
U : 0.74	u : 0.15	G : 0.03	A : 0.03	C : 0.03	
U : 0.74	u : 0.15	C : 0.05	G : 0.05	
C : 0.67	U : 0.08	u : 0.06	A : 0.05	c : 0.05	G : 0.03	g : 0.01	a : 0.01	
U : 0.74	u : 0.16	C : 0.06	A : 0.01	
U : 0.76	u : 0.16	G : 0.03	A : 0.01	C : 0.01	
U : 0.72	u : 0.16	C : 0.06	G : 0.03	
U : 0.71	u : 0.15	G : 0.05	C : 0.05	A : 0.01	a : 0.01	
U : 0.64	u : 0.15	C : 0.13	A : 0.03	g : 0.01	G : 0.01	
U : 0.69	u : 0.16	C : 0.06	A : 0.06	

#score	1366.8813559322016
#seq	59
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_CDS_m2_run2.nuc.txt

#NT
UUGGAAUCGUUAUAAAUACAGAUGUUUCUAAAGGGUUCUACAUCCAUGCUAGAUUUUCAUGCUGACUUAAAAAAAAAUUAUUUCUUCAUCCUCAGAUCAUCAUGCAUGUAUUUUGCACCUACCUUGAUUCCAGAUUACCUCCACAUCCGAAGUAUCCCGACGGAAAAACUUUUACUUCUCAGCACUUUGUUCAGACACCAAAUAAACCAGGUAUAAACCUCUCCUAAAAGAAUGUGUUGAGAUUUUCACACAAAAUAUCUCUGGGGGUUUGGUUUUUUAAUGCAGCAUAUUGCCUUCCUUUACAGAU	chr7:129813565-129813874(-)$1	309	0	307	376.0000

#otherMatches

#Struct PSSM
FFFFF{CCC{HHHHHHHH{DDDD{BB{A{CCCKKDDDD{BBLLLDDDD::::::::::::ffffffccc[a[bb[eeeeebb[bbvvvvvvvvvvvvvbb]bb]eeeee]bba]ccc22ffffff::::eeeee[cccpppppppccceeeee::::eeeeea[bboooooobb]a]eeeee:DDDD}BB}DDDDCCCA}BB}DDDDYYHHHHHHHH}CCCYYFFFFFF:ccc####dddd!!hhhhhhhh%%%%%%dddd####ddddpppppppdddddddd666666hhhhhhhh333dddd22	chr17:27244199-27244516(-)$1	317	4	311	376.0000
ffffff[ddddrrrrrrrrrdddd]ffffffEEEEEddddbbmmmmbb]dddd:::::FFFFFFKKHHHHHHHH::::::::::::::::::::eeeee"""ddddpppppppdddd7777777eeeeeDDDDLLLGGGGGGG:::::eeeee[cccmmmmccc333eeeee::::iiiiiiiii[bb[bb+++++++++++++++++ddddmmmmdddd7777777bb]bb]iiiiiiiii:::::::::::::::::::GGGGGGGDDDDHHHHHHHHYYFFFFFFZZZEEEEE:::::::::::	chr7:129813565-129813874(-)$1	309	0	307	376.0000

#DB
(((((.(((.((((((((.((((.((.(.(((..((((.((...((((............(((((((((.(.((.(((((((.((.............)).)).))))).))).)))..))))))....(((((.(((.......))))))))....((((((.((......)).).))))).)))).)).)))))))).)).))))..)))))))).)))..)))))).(((....((((..((((((((......((((....((((.......))))))))......))))))))...))))..	chr17:27244199-27244516(-)$1	1	4	311	376.0000
((((((.((((.........)))).))))))(((((((((((....)).)))).....((((((..((((((((....................(((((...((((.......)))).......)))))((((...(((((((.....(((((.(((....)))...)))))....(((((((((.((.((.................((((....)))).......)).)).)))))))))...................)))))))))))))))))))..))))))...)))))...........	chr7:129813565-129813874(-)$1	1	0	307	376.0000

#PSSM
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
u : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	C : 0.50	
u : 0.50	U : 0.50	
u : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
c : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	U : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
u : 0.50	U : 0.50	
c : 0.50	U : 0.50	
a : 0.50	U : 0.50	
c : 0.50	U : 0.50	
u : 0.50	U : 0.50	
g : 0.50	A : 0.50	
u : 0.50	A : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
a : 0.50	A : 0.50	
a : 0.50	G : 0.50	
u : 0.50	C : 0.50	
u : 0.50	A : 0.50	
u : 0.50	U : 0.50	
u : 0.50	A : 0.50	
a : 0.50	U : 0.50	
c : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
a : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
a : 0.50	U : 0.50	
a : 0.50	U : 0.50	
a : 0.50	A : 0.50	
c : 0.50	C : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
a : 0.50	U : 0.50	

#score	752.0
#seq	2
#width	307
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_CDS_m3_run2.nuc.txt

#NT
uuccuuUUU	chr4:74313080-74313328(+)$1	248	17	26	19.6470
UUUCUUUUU	chr2:216251500-216251734(-)$1	234	11	20	23.4705
UUUCUUUUU	chr4:74277701-74277914(+)$1	213	0	9	23.4705
UUUCUGUUU	chr12:9245960-9246179(-)$1	219	189	198	19.3529
UUUCUUUUU	chr4:74310650-74310887(+)$1	237	41	50	23.4705
UUUCCUUUU	chr2:216298011-216298229(-)$1	218	28	37	19.5000
UUUCUUUUU	chr4:74310609-74310816(+)$1	207	82	91	23.4705
UUUCUUUUU	chr4:74275026-74275236(+)$1	210	26	35	23.4705
CUUCUUUUU	chr4:74283154-74283398(+)$1	244	79	88	19.2058
UUCCCUUUU	chr2:21228190-21228412(-)$1	222	95	104	15.6764
UUCCUUUUU	chr4:74275928-74276130(+)$1	202	87	96	19.6470
UUUCUGUUU	chr20:35833076-35833296(+)$1	220	73	82	19.3529
UUCCCUUUU	chr2:21228165-21228390(-)$1	225	73	82	15.6764
UAUCUUUUU	chr2:216289747-216289960(-)$1	213	152	161	19.0588
UUUCUUUUU	chr12:9253668-9253891(-)$1	223	63	72	23.4705
UUUCUAUUU	chr2:216283998-216284208(-)$1	210	3	12	19.2058
UUUCUUCUU	chr1:116931423-116931644(+)$1	221	77	86	18.7647
UUUCUCUUU	chr1:116946407-116946642(+)$1	235	34	43	19.2058
UUUCUUUUC	chr2:216272949-216273168(-)$1	219	1	10	19.6470
UUUCUUUUU	chr15:44057563-44057815(+)$1	252	65	74	23.4705
UUUCUUUUU	chr4:74275051-74275271(+)$1	220	1	10	23.4705
UUUCUUUUU	chr4:74277612-74277827(+)$1	215	89	98	23.4705
UUUCUUUUC	chr3:133476512-133476717(+)$1	205	22	31	19.6470
UUUCUUUUC	chr6:31508793-31509034(-)$1	241	91	100	19.6470
UCUCUUUUU	chr2:216232547-216232788(-)$1	241	5	14	19.2058
UUUCAUUUU	chr2:216279559-216279781(-)$1	222	88	97	19.2058
UCUCUUUUU	chr2:216232602-216232811(-)$1	209	28	37	19.2058
GUUCUUUUU	chr3:133475026-133475273(+)$1	247	201	210	19.0588
UUUCUUUUU	chr4:74310706-74310939(+)$1	233	179	188	23.4705
UUUCUUUUC	chr3:58106894-58107139(+)$1	245	61	70	19.6470
UUUCUUUUU	chr4:74277660-74277879(+)$1	219	41	50	23.4705
UUUCUUUUU	chr2:216259273-216259516(-)$1	243	58	67	23.4705
CUUCUUUUU	chr4:74283198-74283424(+)$1	226	35	44	19.2058

#otherMatches

#Struct PSSM
zzzzzzzzz	chr12:9220678-9220904(-)$1	226	27	36	18.7647
:::::::::	chr4:74313080-74313328(+)$1	248	17	26	19.6470
DDDD:::::	chr2:216251500-216251734(-)$1	234	11	20	23.4705
eeeee$$$$	chr4:74277701-74277914(+)$1	213	0	9	23.4705
??DDDD}FF	chr12:9245960-9246179(-)$1	219	189	198	19.3529
iiiiii:::	chr4:74310650-74310887(+)$1	237	41	50	23.4705
KKBB{FFFF	chr2:216298011-216298229(-)$1	218	28	37	19.5000
iiiiii:::	chr4:74310609-74310816(+)$1	207	82	91	23.4705
ggga!!eee	chr4:74275026-74275236(+)$1	210	26	35	23.4705
AHHHHHHHH	chr4:74283154-74283398(+)$1	244	79	88	19.2058
!!a[fffff	chr2:21228190-21228412(-)$1	222	95	104	15.6764
iiiiiii44	chr4:74275928-74276130(+)$1	202	87	96	19.6470
"gggggggp	chr20:35833076-35833296(+)$1	220	73	82	19.3529
:::::::::	chr2:21228165-21228390(-)$1	225	73	82	15.6764
::ddddmmm	chr2:216289747-216289960(-)$1	213	152	161	19.0588
dddd::::G	chr12:9253668-9253891(-)$1	223	63	72	23.4705
:::::::::	chr2:216283998-216284208(-)$1	210	3	12	19.2058
:::::::::	chr1:116931423-116931644(+)$1	221	77	86	18.7647
+++++++++	chr1:116946407-116946642(+)$1	235	34	43	19.2058
::eeeeepp	chr2:216272949-216273168(-)$1	219	1	10	19.6470
00=======	chr15:44057563-44057815(+)$1	252	65	74	23.4705
:::::::::	chr4:74275051-74275271(+)$1	220	1	10	23.4705
2ccc66666	chr4:74277612-74277827(+)$1	215	89	98	23.4705
pppppppee	chr3:133476512-133476717(+)$1	205	22	31	19.6470
TTTTTTTDD	chr6:31508793-31509034(-)$1	241	91	100	19.6470
:::::::::	chr2:216232547-216232788(-)$1	241	5	14	19.2058
ee22ccc]b	chr2:216279559-216279781(-)$1	222	88	97	19.2058
:::::::::	chr2:216232602-216232811(-)$1	209	28	37	19.2058
=========	chr3:133475026-133475273(+)$1	247	201	210	19.0588
========[	chr4:74310706-74310939(+)$1	233	179	188	23.4705
^^^^^^^^^	chr3:58106894-58107139(+)$1	245	61	70	19.6470
JJJDDDDDD	chr4:74277660-74277879(+)$1	219	41	50	23.4705
D{BB{DDDD	chr2:216259273-216259516(-)$1	243	58	67	23.4705
AHHHHHHHH	chr4:74283198-74283424(+)$1	226	35	44	19.2058

#DB
.........	chr12:9220678-9220904(-)$1	1	27	36	18.7647
.........	chr4:74313080-74313328(+)$1	1	17	26	19.6470
((((.....	chr2:216251500-216251734(-)$1	1	11	20	23.4705
(((((....	chr4:74277701-74277914(+)$1	1	0	9	23.4705
..)))).))	chr12:9245960-9246179(-)$1	1	189	198	19.3529
))))))...	chr4:74310650-74310887(+)$1	1	41	50	23.4705
..((.((((	chr2:216298011-216298229(-)$1	1	28	37	19.5000
))))))...	chr4:74310609-74310816(+)$1	1	82	91	23.4705
((((..(((	chr4:74275026-74275236(+)$1	1	26	35	23.4705
(((((((((	chr4:74283154-74283398(+)$1	1	79	88	19.2058
..(.(((((	chr2:21228190-21228412(-)$1	1	95	104	15.6764
)))))))..	chr4:74275928-74276130(+)$1	1	87	96	19.6470
.(((((((.	chr20:35833076-35833296(+)$1	1	73	82	19.3529
.........	chr2:21228165-21228390(-)$1	1	73	82	15.6764
..((((...	chr2:216289747-216289960(-)$1	1	152	161	19.0588
))))....(	chr12:9253668-9253891(-)$1	1	63	72	23.4705
.........	chr2:216283998-216284208(-)$1	1	3	12	19.2058
.........	chr1:116931423-116931644(+)$1	1	77	86	18.7647
.........	chr1:116946407-116946642(+)$1	1	34	43	19.2058
..(((((..	chr2:216272949-216273168(-)$1	1	1	10	19.6470
..)))))))	chr15:44057563-44057815(+)$1	1	65	74	23.4705
.........	chr4:74275051-74275271(+)$1	1	1	10	23.4705
.))).....	chr4:74277612-74277827(+)$1	1	89	98	23.4705
.......))	chr3:133476512-133476717(+)$1	1	22	31	19.6470
.......((	chr6:31508793-31509034(-)$1	1	91	100	19.6470
.........	chr2:216232547-216232788(-)$1	1	5	14	19.2058
))..))).)	chr2:216279559-216279781(-)$1	1	88	97	19.2058
.........	chr2:216232602-216232811(-)$1	1	28	37	19.2058
)))))))))	chr3:133475026-133475273(+)$1	1	201	210	19.0588
((((((((.	chr4:74310706-74310939(+)$1	1	179	188	23.4705
.........	chr3:58106894-58107139(+)$1	1	61	70	19.6470
(((((((((	chr4:74277660-74277879(+)$1	1	41	50	23.4705
(.((.((((	chr2:216259273-216259516(-)$1	1	58	67	23.4705
(((((((((	chr4:74283198-74283424(+)$1	1	35	44	19.2058

#PSSM
U : 0.88	C : 0.05	u : 0.02	G : 0.02	
U : 0.88	C : 0.05	u : 0.02	A : 0.02	
U : 0.88	C : 0.08	c : 0.02	
C : 0.97	c : 0.02	
U : 0.85	C : 0.08	u : 0.02	A : 0.02	
U : 0.85	G : 0.05	u : 0.02	A : 0.02	C : 0.02	
U : 0.97	C : 0.02	
U : 0.97	C : 0.02	
U : 0.88	C : 0.11	

#score	699.1764705882357
#seq	34
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_transcript_m2_run2.nuc.txt

#NT
GAGGAAGG	chr2:234762963-234763273(-)$1	310	35	43	16.7083
gaggaaga	chr2:99992739-99993019(+)$1	280	126	134	20.4583
GAGGAAGG	chr17:15942684-15943011(-)$1	327	237	245	16.7083
GAGGAAGA	chr7:100464925-100465179(+)$1	254	60	68	20.4583
AAGGAAGA	chr1:22109203-22109513(-)$1	310	267	275	16.2916
GAUGAAGA	chr12:132198614-132198898(+)$1	284	113	121	16.0833
UAGGAAGA	chr11:65267960-65268164(+)$1	204	74	82	16.3958
GAGGAAGA	chr1:65991633-65991980(+)$1	347	93	101	20.4583
gaggaaga	chrX:70683610-70683929(+)$1	319	148	156	20.4583
GUGGAAGA	chr2:69577131-69577391(-)$1	260	138	146	16.9166
UAGGAAGA	chr11:65267929-65268136(+)$1	207	105	113	16.3958
GAGCAAGA	chr19:7707549-7707811(+)$1	262	135	143	15.8750
gaggaaga	chr6:31857206-31857459(-)$1	253	125	133	20.4583
GUGGAAGA	chr5:462263-462547(+)$1	284	51	59	16.9166
GUGGAAGA	chr20:62504941-62505268(+)$1	327	79	87	16.9166
GAGGAACA	chr10:70520840-70521050(+)$1	210	19	27	15.7708
gaggaaga	chr1:90493023-90493263(+)$1	240	0	8	20.4583
GAGGAAGC	chr22:22277693-22277972(-)$1	279	73	81	16.3958
GCGGAAGA	chr12:121001527-121001836(+)$1	309	84	92	16.3958
GAGGAAGA	chr13:107211621-107212031(-)$1	410	57	65	20.4583
GAGAAAGA	chr1:200589442-200589743(-)$1	301	241	249	15.9791
GAGGAAAA	chr2:145274718-145275013(-)$1	295	158	166	15.7708
GAGGAAGA	chr11:65830889-65831115(+)$1	226	59	67	20.4583
gaggaagg	chr11:377060-377321(+)$1	261	1	9	16.7083
gaggaaga	chr1:210004143-210004486(+)$1	343	106	114	20.4583
GAGGAUGA	chr5:176981152-176981445(-)$1	293	160	168	15.8750
GAGGAAGA	chr1:27105546-27105833(+)$1	287	165	173	20.4583
GAGGAAGG	chr7:72934746-72935093(-)$1	347	146	154	16.7083
GAGGAAGA	chr12:123001661-123001947(-)$1	286	54	62	20.4583
GAAGAAGA	chr2:128255609-128255924(-)$1	315	132	140	16.0833
GAGGAAGA	chr1:16952240-16952537(-)$1	297	40	48	20.4583
GAAGAAGA	chr8:30891267-30891533(+)$1	266	190	198	16.0833
GAGAAAGA	chr4:80898653-80898932(-)$1	279	179	187	15.9791
GAGGGAGA	chr1:53018549-53018856(-)$1	307	188	196	15.6666
GGGGAAGA	chr5:180486139-180486399(+)$1	260	34	42	16.3958
GUGgaaga	chr12:104340988-104341210(+)$1	222	100	108	16.9166
GAGGAAGC	chr22:36684340-36684561(-)$1	221	134	142	16.3958
UAGGAAGA	chr11:65267936-65268143(+)$1	207	98	106	16.3958
GUGGAAGA	chr6:91296387-91296723(-)$1	336	232	240	16.9166
gaugaaga	chr1:186296491-186296743(-)$1	252	110	118	16.0833
GUGGAAGA	chr16:15125488-15125833(+)$1	345	29	37	16.9166
CAGGAAGA	chr11:65732737-65733009(+)$1	272	72	80	16.1875
gaggaaga	chr6:44218004-44218223(+)$1	219	65	73	20.4583
GAGGAAGA	chr10:120809213-120809423(-)$1	210	69	77	20.4583
gaggaagg	chr22:50014070-50014346(-)$1	276	72	80	16.7083
AAGGAAGA	chr15:28490895-28491270(-)$1	375	334	342	16.2916
GAGGAGGA	chr17:36868045-36868342(+)$1	297	97	105	15.8750

#otherMatches

#Struct PSSM
fffppppp	chr7:155437434-155437724(+)$1	290	262	270	15.8750
mmbb6666	chr2:234762963-234763273(-)$1	310	35	43	16.7083
::::::::	chr2:99992739-99993019(+)$1	280	126	134	20.4583
c!!bb[bb	chr17:15942684-15943011(-)$1	327	237	245	16.7083
dd]bb:::	chr7:100464925-100465179(+)$1	254	60	68	20.4583
##annnnn	chr1:22109203-22109513(-)$1	310	267	275	16.2916
FFFFFFA{	chr12:132198614-132198898(+)$1	284	113	121	16.0833
c:::::::	chr11:65267960-65268164(+)$1	204	74	82	16.3958
[bbooooo	chr1:65991633-65991980(+)$1	347	93	101	20.4583
>>>>>>>>	chrX:70683610-70683929(+)$1	319	148	156	20.4583
mmffffff	chr2:69577131-69577391(-)$1	260	138	146	16.9166
b>>>>>>>	chr11:65267929-65268136(+)$1	207	105	113	16.3958
GGGZZZDD	chr19:7707549-7707811(+)$1	262	135	143	15.8750
^^^^^^^^	chr6:31857206-31857459(-)$1	253	125	133	20.4583
eeeee:dd	chr5:462263-462547(+)$1	284	51	59	16.9166
ccc!!ddd	chr20:62504941-62505268(+)$1	327	79	87	16.9166
::::::::	chr10:70520840-70521050(+)$1	210	19	27	15.7708
::::::::	chr1:90493023-90493263(+)$1	240	0	8	20.4583
=====[bb	chr22:22277693-22277972(-)$1	279	73	81	16.3958
FAdddd[c	chr12:121001527-121001836(+)$1	309	84	92	16.3958
c[asssss	chr13:107211621-107212031(-)$1	410	57	65	20.4583
CCCZZZDD	chr1:200589442-200589743(-)$1	301	241	249	15.9791
fffff$$$	chr2:145274718-145275013(-)$1	295	158	166	15.7708
eeeee::D	chr11:65830889-65831115(+)$1	226	59	67	20.4583
::::::::	chr11:377060-377321(+)$1	261	1	9	16.7083
IIIIII::	chr1:210004143-210004486(+)$1	343	106	114	20.4583
{FFFFFF{	chr5:176981152-176981445(-)$1	293	160	168	15.8750
g:::::::	chr1:27105546-27105833(+)$1	287	165	173	20.4583
EEEYYCCC	chr7:72934746-72935093(-)$1	347	146	154	16.7083
vvccc555	chr12:123001661-123001947(-)$1	286	54	62	20.4583
oooooccc	chr2:128255609-128255924(-)$1	315	132	140	16.0833
++++++++	chr1:16952240-16952537(-)$1	297	40	48	20.4583
:::fffff	chr8:30891267-30891533(+)$1	266	190	198	16.0833
ff####dd	chr4:80898653-80898932(-)$1	279	179	187	15.9791
========	chr1:53018549-53018856(-)$1	307	188	196	15.6666
GJJJJJJJ	chr5:180486139-180486399(+)$1	260	34	42	16.3958
ee^^^^^^	chr12:104340988-104341210(+)$1	222	100	108	16.9166
d!!bb###	chr22:36684340-36684561(-)$1	221	134	142	16.3958
b:::::::	chr11:65267936-65268143(+)$1	207	98	106	16.3958
D}CCC}FF	chr6:91296387-91296723(-)$1	336	232	240	16.9166
::::::DD	chr1:186296491-186296743(-)$1	252	110	118	16.0833
""a[gggg	chr16:15125488-15125833(+)$1	345	29	37	16.9166
gccctttt	chr11:65732737-65733009(+)$1	272	72	80	16.1875
====::::	chr6:44218004-44218223(+)$1	219	65	73	20.4583
DDD{DDDD	chr10:120809213-120809423(-)$1	210	69	77	20.4583
ppppppad	chr22:50014070-50014346(-)$1	276	72	80	16.7083
eeeee]cc	chr15:28490895-28491270(-)$1	375	334	342	16.2916
KKDDDDKK	chr17:36868045-36868342(+)$1	297	97	105	15.8750

#DB
(((.....	chr7:155437434-155437724(+)$1	1	262	270	15.8750
..))....	chr2:234762963-234763273(-)$1	1	35	43	16.7083
........	chr2:99992739-99993019(+)$1	1	126	134	20.4583
(..((.((	chr17:15942684-15943011(-)$1	1	237	245	16.7083
)).))...	chr7:100464925-100465179(+)$1	1	60	68	20.4583
..(.....	chr1:22109203-22109513(-)$1	1	267	275	16.2916
(((((((.	chr12:132198614-132198898(+)$1	1	113	121	16.0833
).......	chr11:65267960-65268164(+)$1	1	74	82	16.3958
.((.....	chr1:65991633-65991980(+)$1	1	93	101	20.4583
........	chrX:70683610-70683929(+)$1	1	148	156	20.4583
..))))))	chr2:69577131-69577391(-)$1	1	138	146	16.9166
).......	chr11:65267929-65268136(+)$1	1	105	113	16.3958
)))...))	chr19:7707549-7707811(+)$1	1	135	143	15.8750
........	chr6:31857206-31857459(-)$1	1	125	133	20.4583
))))).((	chr5:462263-462547(+)$1	1	51	59	16.9166
(((..(((	chr20:62504941-62505268(+)$1	1	79	87	16.9166
........	chr10:70520840-70521050(+)$1	1	19	27	15.7708
........	chr1:90493023-90493263(+)$1	1	0	8	20.4583
(((((.((	chr22:22277693-22277972(-)$1	1	73	81	16.3958
((((((.(	chr12:121001527-121001836(+)$1	1	84	92	16.3958
(.(.....	chr13:107211621-107212031(-)$1	1	57	65	20.4583
)))...))	chr1:200589442-200589743(-)$1	1	241	249	15.9791
(((((...	chr2:145274718-145275013(-)$1	1	158	166	15.7708
)))))..(	chr11:65830889-65831115(+)$1	1	59	67	20.4583
........	chr11:377060-377321(+)$1	1	1	9	16.7083
))))))..	chr1:210004143-210004486(+)$1	1	106	114	20.4583
.((((((.	chr5:176981152-176981445(-)$1	1	160	168	15.8750
).......	chr1:27105546-27105833(+)$1	1	165	173	20.4583
)))..)))	chr7:72934746-72935093(-)$1	1	146	154	16.7083
..)))...	chr12:123001661-123001947(-)$1	1	54	62	20.4583
.....)))	chr2:128255609-128255924(-)$1	1	132	140	16.0833
........	chr1:16952240-16952537(-)$1	1	40	48	20.4583
...(((((	chr8:30891267-30891533(+)$1	1	190	198	16.0833
((....((	chr4:80898653-80898932(-)$1	1	179	187	15.9791
))))))))	chr1:53018549-53018856(-)$1	1	188	196	15.6666
((((((((	chr5:180486139-180486399(+)$1	1	34	42	16.3958
((......	chr12:104340988-104341210(+)$1	1	100	108	16.9166
(..((...	chr22:36684340-36684561(-)$1	1	134	142	16.3958
).......	chr11:65267936-65268143(+)$1	1	98	106	16.3958
).))).))	chr6:91296387-91296723(-)$1	1	232	240	16.9166
......))	chr1:186296491-186296743(-)$1	1	110	118	16.0833
..(.((((	chr16:15125488-15125833(+)$1	1	29	37	16.9166
((((....	chr11:65732737-65733009(+)$1	1	72	80	16.1875
))))....	chr6:44218004-44218223(+)$1	1	65	73	20.4583
(((.((((	chr10:120809213-120809423(-)$1	1	69	77	20.4583
......))	chr22:50014070-50014346(-)$1	1	72	80	16.7083
))))).))	chr15:28490895-28491270(-)$1	1	334	342	16.2916
..((((..	chr17:36868045-36868342(+)$1	1	97	105	15.8750

#PSSM
G : 0.68	g : 0.18	U : 0.06	A : 0.04	C : 0.02	
A : 0.64	a : 0.18	U : 0.12	C : 0.02	G : 0.02	
G : 0.75	g : 0.16	A : 0.04	U : 0.02	u : 0.02	
G : 0.72	g : 0.20	A : 0.04	C : 0.02	
A : 0.77	a : 0.20	G : 0.02	
A : 0.72	a : 0.20	C : 0.02	U : 0.02	G : 0.02	
G : 0.75	g : 0.20	C : 0.02	A : 0.02	
A : 0.68	a : 0.16	G : 0.06	C : 0.04	g : 0.04	

#score	842.0000000000001
#seq	48
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_UTR_m3_run2.nuc.txt

#NT
UUUUG	chr17:79878966-79879226(-)$1	260	8	13	15.0000
UUUUG	chr9:19379849-19380136(-)$1	287	103	108	15.0000
UUUUG	chr22:45714593-45714861(+)$1	268	191	196	15.0000
UUUUG	chr7:150929951-150930249(+)$1	298	62	67	15.0000
UUUUG	chr4:152020806-152021122(+)$1	316	89	94	15.0000
UUUUG	chr11:119172708-119173024(+)$1	316	11	16	15.0000
UUUUG	chr2:11721003-11721259(+)$1	256	247	252	15.0000
UUUUG	chr2:235887474-235887722(+)$1	248	84	89	15.0000
UUUUG	chr1:20234834-20235134(+)$1	300	140	145	15.0000
UUUUG	chr6:32940753-32940974(+)$1	221	103	108	15.0000
uuuug	chr11:940637-940886(+)$1	249	44	49	15.0000
UUUUG	chr17:79879113-79879357(-)$1	244	54	59	15.0000
UUUUG	chrX:17755839-17756106(+)$1	267	172	177	15.0000
UUUUG	chr13:99103991-99104254(-)$1	263	101	106	15.0000
UUUUG	chr3:176914033-176914302(-)$1	269	180	185	15.0000
UUUUG	chr2:61245583-61245820(+)$1	237	27	32	15.0000
UUUUG	chr13:111291826-111292117(+)$1	291	264	269	15.0000
UUUUG	chr5:151151982-151152234(+)$1	252	105	110	15.0000
UUUUG	chr19:49605816-49606073(+)$1	257	36	41	15.0000
UUUUG	chr2:27998725-27998979(+)$1	254	241	246	15.0000
UUUUG	chr20:30947420-30947665(+)$1	245	143	148	15.0000
UUUUG	chr12:63041217-63041521(-)$1	304	295	300	15.0000
uuuug	chr16:89337982-89338247(-)$1	265	90	95	15.0000
UUUUG	chr20:23356493-23356740(-)$1	247	92	97	15.0000
UUUUG	chr2:239360154-239360406(+)$1	252	180	185	15.0000
UUUUG	chr7:104752861-104753089(-)$1	228	210	215	15.0000
UUUUG	chr5:138630505-138630770(+)$1	265	196	201	15.0000
UUUUG	chr3:49130748-49131020(-)$1	272	66	71	15.0000
uuuug	chr19:54970297-54970553(+)$1	256	67	72	15.0000
UUUUG	chr6:44215480-44215757(+)$1	277	263	268	15.0000
UUUUG	chr9:35071626-35071883(-)$1	257	102	107	15.0000
UUUUG	chr10:14614037-14614288(-)$1	251	3	8	15.0000
UUUUG	chr1:21501048-21501311(-)$1	263	114	119	15.0000
UUUUG	chr2:240898628-240898900(-)$1	272	13	18	15.0000
UUUUG	chr17:79879177-79879434(-)$1	257	41	46	15.0000
UUUUG	chr1:32573829-32574100(+)$1	271	61	66	15.0000
UUUUG	chr1:204523715-204523960(+)$1	245	168	173	15.0000
UUUUG	chr8:42396004-42396226(-)$1	222	4	9	15.0000
UUUUG	chr11:47544899-47545144(-)$1	245	83	88	15.0000
UUUUG	chr17:80789107-80789363(+)$1	256	25	30	15.0000
UUUUG	chr2:181846026-181846306(+)$1	280	12	17	15.0000
uuuug	chr4:1386051-1386352(+)$1	301	126	131	15.0000
UUUUG	chr7:917743-918032(+)$1	289	180	185	15.0000
UUUUG	chr6:32940774-32941007(+)$1	233	82	87	15.0000
UUUUG	chr6:168364435-168364741(+)$1	306	101	106	15.0000
uuuug	chr4:1386529-1386791(+)$1	262	109	114	15.0000
UUUUG	chr21:38454830-38455083(+)$1	253	4	9	15.0000
UUUUG	chr4:151503279-151503635(-)$1	356	276	281	15.0000
UUUUG	chr20:24986864-24987128(-)$1	264	77	82	15.0000
UUUUG	chr21:30671740-30671987(+)$1	247	102	107	15.0000
UUUUG	chr12:77158269-77158555(+)$1	286	153	158	15.0000
UUUUG	chr4:3512247-3512503(-)$1	256	70	75	15.0000

#otherMatches

#Struct PSSM
b"""d	chr1:205580545-205580839(-)$1	294	216	221	15.0000
::::i	chr17:79878966-79879226(-)$1	260	8	13	15.0000
:::::	chr9:19379849-19380136(-)$1	287	103	108	15.0000
:::::	chr22:45714593-45714861(+)$1	268	191	196	15.0000
fffoo	chr7:150929951-150930249(+)$1	298	62	67	15.0000
hhhhh	chr4:152020806-152021122(+)$1	316	89	94	15.0000
uuuuc	chr11:119172708-119173024(+)$1	316	11	16	15.0000
:::::	chr2:11721003-11721259(+)$1	256	247	252	15.0000
hhhhh	chr2:235887474-235887722(+)$1	248	84	89	15.0000
dd]a]	chr1:20234834-20235134(+)$1	300	140	145	15.0000
hh:::	chr6:32940753-32940974(+)$1	221	103	108	15.0000
::::B	chr11:940637-940886(+)$1	249	44	49	15.0000
333bb	chr17:79879113-79879357(-)$1	244	54	59	15.0000
::HHH	chrX:17755839-17756106(+)$1	267	172	177	15.0000
eeee[	chr13:99103991-99104254(-)$1	263	101	106	15.0000
ooeee	chr3:176914033-176914302(-)$1	269	180	185	15.0000
dddd#	chr2:61245583-61245820(+)$1	237	27	32	15.0000
4hhhh	chr13:111291826-111292117(+)$1	291	264	269	15.0000
ddEEE	chr5:151151982-151152234(+)$1	252	105	110	15.0000
:JJJJ	chr19:49605816-49606073(+)$1	257	36	41	15.0000
JJJJJ	chr2:27998725-27998979(+)$1	254	241	246	15.0000
ennnn	chr20:30947420-30947665(+)$1	245	143	148	15.0000
:::::	chr12:63041217-63041521(-)$1	304	295	300	15.0000
ELLLC	chr16:89337982-89338247(-)$1	265	90	95	15.0000
ggg::	chr20:23356493-23356740(-)$1	247	92	97	15.0000
hhhhh	chr2:239360154-239360406(+)$1	252	180	185	15.0000
fffff	chr7:104752861-104753089(-)$1	228	210	215	15.0000
:::ff	chr5:138630505-138630770(+)$1	265	196	201	15.0000
cc333	chr3:49130748-49131020(-)$1	272	66	71	15.0000
ggggg	chr19:54970297-54970553(+)$1	256	67	72	15.0000
:::::	chr6:44215480-44215757(+)$1	277	263	268	15.0000
d4444	chr9:35071626-35071883(-)$1	257	102	107	15.0000
###ee	chr10:14614037-14614288(-)$1	251	3	8	15.0000
ffff:	chr1:21501048-21501311(-)$1	263	114	119	15.0000
nnngg	chr2:240898628-240898900(-)$1	272	13	18	15.0000
ttttt	chr17:79879177-79879434(-)$1	257	41	46	15.0000
e!!ff	chr1:32573829-32574100(+)$1	271	61	66	15.0000
mmmmb	chr1:204523715-204523960(+)$1	245	168	173	15.0000
:::::	chr8:42396004-42396226(-)$1	222	4	9	15.0000
[ffff	chr11:47544899-47545144(-)$1	245	83	88	15.0000
hhhhh	chr17:80789107-80789363(+)$1	256	25	30	15.0000
dd[ee	chr2:181846026-181846306(+)$1	280	12	17	15.0000
IIII?	chr4:1386051-1386352(+)$1	301	126	131	15.0000
mmmee	chr7:917743-918032(+)$1	289	180	185	15.0000
hh:::	chr6:32940774-32941007(+)$1	233	82	87	15.0000
hh22b	chr6:168364435-168364741(+)$1	306	101	106	15.0000
f4444	chr4:1386529-1386791(+)$1	262	109	114	15.0000
GGGGG	chr21:38454830-38455083(+)$1	253	4	9	15.0000
FFFFF	chr4:151503279-151503635(-)$1	356	276	281	15.0000
b!!dd	chr20:24986864-24987128(-)$1	264	77	82	15.0000
iiiii	chr21:30671740-30671987(+)$1	247	102	107	15.0000
gmmmm	chr12:77158269-77158555(+)$1	286	153	158	15.0000
mmmmb	chr4:3512247-3512503(-)$1	256	70	75	15.0000

#DB
(...(	chr1:205580545-205580839(-)$1	1	216	221	15.0000
....(	chr17:79878966-79879226(-)$1	1	8	13	15.0000
.....	chr9:19379849-19380136(-)$1	1	103	108	15.0000
.....	chr22:45714593-45714861(+)$1	1	191	196	15.0000
(((..	chr7:150929951-150930249(+)$1	1	62	67	15.0000
)))))	chr4:152020806-152021122(+)$1	1	89	94	15.0000
....)	chr11:119172708-119173024(+)$1	1	11	16	15.0000
.....	chr2:11721003-11721259(+)$1	1	247	252	15.0000
(((((	chr2:235887474-235887722(+)$1	1	84	89	15.0000
)).).	chr1:20234834-20235134(+)$1	1	140	145	15.0000
))...	chr6:32940753-32940974(+)$1	1	103	108	15.0000
....(	chr11:940637-940886(+)$1	1	44	49	15.0000
...))	chr17:79879113-79879357(-)$1	1	54	59	15.0000
..)))	chrX:17755839-17756106(+)$1	1	172	177	15.0000
((((.	chr13:99103991-99104254(-)$1	1	101	106	15.0000
..)))	chr3:176914033-176914302(-)$1	1	180	185	15.0000
((((.	chr2:61245583-61245820(+)$1	1	27	32	15.0000
.))))	chr13:111291826-111292117(+)$1	1	264	269	15.0000
))(((	chr5:151151982-151152234(+)$1	1	105	110	15.0000
.((((	chr19:49605816-49606073(+)$1	1	36	41	15.0000
)))))	chr2:27998725-27998979(+)$1	1	241	246	15.0000
(....	chr20:30947420-30947665(+)$1	1	143	148	15.0000
.....	chr12:63041217-63041521(-)$1	1	295	300	15.0000
(...(	chr16:89337982-89338247(-)$1	1	90	95	15.0000
)))..	chr20:23356493-23356740(-)$1	1	92	97	15.0000
)))))	chr2:239360154-239360406(+)$1	1	180	185	15.0000
(((((	chr7:104752861-104753089(-)$1	1	210	215	15.0000
...((	chr5:138630505-138630770(+)$1	1	196	201	15.0000
))...	chr3:49130748-49131020(-)$1	1	66	71	15.0000
)))))	chr19:54970297-54970553(+)$1	1	67	72	15.0000
.....	chr6:44215480-44215757(+)$1	1	263	268	15.0000
)....	chr9:35071626-35071883(-)$1	1	102	107	15.0000
...((	chr10:14614037-14614288(-)$1	1	3	8	15.0000
)))).	chr1:21501048-21501311(-)$1	1	114	119	15.0000
...))	chr2:240898628-240898900(-)$1	1	13	18	15.0000
.....	chr17:79879177-79879434(-)$1	1	41	46	15.0000
(..((	chr1:32573829-32574100(+)$1	1	61	66	15.0000
....)	chr1:204523715-204523960(+)$1	1	168	173	15.0000
.....	chr8:42396004-42396226(-)$1	1	4	9	15.0000
.((((	chr11:47544899-47545144(-)$1	1	83	88	15.0000
(((((	chr17:80789107-80789363(+)$1	1	25	30	15.0000
((.((	chr2:181846026-181846306(+)$1	1	12	17	15.0000
)))).	chr4:1386051-1386352(+)$1	1	126	131	15.0000
...))	chr7:917743-918032(+)$1	1	180	185	15.0000
))...	chr6:32940774-32941007(+)$1	1	82	87	15.0000
))..)	chr6:168364435-168364741(+)$1	1	101	106	15.0000
)....	chr4:1386529-1386791(+)$1	1	109	114	15.0000
(((((	chr21:38454830-38455083(+)$1	1	4	9	15.0000
)))))	chr4:151503279-151503635(-)$1	1	276	281	15.0000
(..((	chr20:24986864-24987128(-)$1	1	77	82	15.0000
(((((	chr21:30671740-30671987(+)$1	1	102	107	15.0000
(....	chr12:77158269-77158555(+)$1	1	153	158	15.0000
....)	chr4:3512247-3512503(-)$1	1	70	75	15.0000

#PSSM
U : 0.90	u : 0.09	
U : 0.90	u : 0.09	
U : 0.90	u : 0.09	
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	

#score	795.0
#seq	53
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_UTR_m3_run1.nuc.txt

#NT
UGAG	chr17:33337616-33337862(-)$1	246	14	18	11.9999
UGAG	chr6:32942138-32942390(+)$1	252	190	194	11.9999
UGAG	chr19:15348117-15348350(-)$1	233	20	24	11.9999
UGAG	chr5:132092875-132093131(-)$1	256	41	45	11.9999
ugag	chr20:44054576-44054845(+)$1	269	120	124	11.9999
ugag	chr3:49460778-49461017(-)$1	239	91	95	11.9999
UGAG	chr13:30088000-30088255(-)$1	255	95	99	11.9999
UGAG	chr3:100083429-100083700(-)$1	271	103	107	11.9999
UGAG	chr16:723886-724202(+)$1	316	103	107	11.9999
UGAG	chr17:64804501-64804773(+)$1	272	188	192	11.9999
UGAG	chr20:62564688-62564959(+)$1	271	18	22	11.9999
UGAG	chr11:118472309-118472562(+)$1	253	12	16	11.9999
UGAG	chr2:109302791-109303025(+)$1	234	10	14	11.9999
UGAG	chr19:19739405-19739726(-)$1	321	132	136	11.9999
ugag	chr5:115166222-115166470(-)$1	248	4	8	11.9999
ugag	chr19:17693132-17693362(+)$1	230	8	12	11.9999
ugag	chr17:17115606-17115892(-)$1	286	57	61	11.9999
UGAG	chr17:80201169-80201461(-)$1	292	101	105	11.9999
UGAG	chr7:128142369-128142652(+)$1	283	99	103	11.9999
UGAG	chr12:56365627-56365876(+)$1	249	216	220	11.9999
UGAG	chr18:12431163-12431436(+)$1	273	15	19	11.9999
UGAG	chr3:196312725-196312984(+)$1	259	216	220	11.9999
UGAG	chr10:81143610-81143852(-)$1	242	92	96	11.9999
UGAG	chr11:67165285-67165547(+)$1	262	15	19	11.9999
UGAG	chr19:14202851-14203087(-)$1	236	143	147	11.9999
UGAG	chr20:3912989-3913270(-)$1	281	118	122	11.9999
UGAG	chr17:42827255-42827545(+)$1	290	125	129	11.9999
UGAG	chr11:119176583-119176847(+)$1	264	115	119	11.9999
UGAG	chr1:47684737-47685051(-)$1	314	21	25	11.9999
UGAG	chr19:975264-975506(+)$1	242	14	18	11.9999
ugag	chr22:24937461-24937693(-)$1	232	96	100	11.9999
UGAG	chr6:36822679-36822925(-)$1	246	81	85	11.9999
UGAG	chr17:76168442-76168709(+)$1	267	115	119	11.9999
UGAG	chr2:122096495-122096820(-)$1	325	180	184	11.9999
UGAG	chr11:107662720-107662991(-)$1	271	106	110	11.9999
UGAG	chr19:55964337-55964638(-)$1	301	137	141	11.9999
UGAG	chr12:31433951-31434208(-)$1	257	112	116	11.9999
UGAG	chr19:50436704-50436960(+)$1	256	168	172	11.9999
UGAG	chr10:99519966-99520228(+)$1	262	190	194	11.9999
UGAG	chr17:40352610-40352843(-)$1	233	0	4	11.9999
UGAG	chr2:128950115-128950358(+)$1	243	56	60	11.9999
UGAG	chr3:49762998-49763316(-)$1	318	106	110	11.9999
UGAG	chr19:12811062-12811308(-)$1	246	8	12	11.9999
UGAG	chr9:110092549-110092802(+)$1	253	28	32	11.9999
UGAG	chr22:19430527-19430759(-)$1	232	89	93	11.9999
ugag	chr22:29902852-29903097(-)$1	245	3	7	11.9999
UGAG	chr16:24226266-24226530(+)$1	264	42	46	11.9999
UGAG	chr17:47126807-47127046(+)$1	239	73	77	11.9999
UGAG	chr5:171289126-171289376(-)$1	250	9	13	11.9999
UGAG	chr22:43563151-43563389(-)$1	238	8	12	11.9999
UGAG	chr11:75283332-75283604(+)$1	272	5	9	11.9999
UGAG	chr11:111933537-111933862(+)$1	325	121	125	11.9999
UGAG	chr10:74035545-74035749(+)$1	204	58	62	11.9999
UGAG	chr11:118915561-118915788(-)$1	227	8	12	11.9999
UGAG	chr19:7977678-7977943(+)$1	265	117	121	11.9999
UGAG	chr7:75517928-75518203(+)$1	275	265	269	11.9999
UGAG	chr1:9673693-9673983(+)$1	290	19	23	11.9999
UGAG	chr1:154935563-154935850(-)$1	287	116	120	11.9999
UGAG	chr2:97259849-97260138(-)$1	289	276	280	11.9999
ugag	chr15:75128411-75128700(-)$1	289	52	56	11.9999
UGAG	chr6:37142086-37142300(+)$1	214	114	118	11.9999
UGAG	chr6:32946035-32946260(+)$1	225	131	135	11.9999
UGAG	chr22:19957060-19957326(+)$1	266	77	81	11.9999
UGAG	chr12:56633926-56634163(-)$1	237	63	67	11.9999
UGAG	chr16:87864098-87864333(-)$1	235	42	46	11.9999
UGAG	chr8:11700679-11700920(-)$1	241	12	16	11.9999
ugag	chr20:32294698-32294952(-)$1	254	14	18	11.9999
UGAG	chr12:113826789-113827046(+)$1	257	74	78	11.9999
UGAG	chr5:137682953-137683200(+)$1	247	75	79	11.9999
UGAG	chr5:179263834-179264111(+)$1	277	240	244	11.9999
UGAG	chr15:91426135-91426388(+)$1	253	3	7	11.9999
UGAG	chr16:23584447-23584675(+)$1	228	196	200	11.9999
UGAG	chr10:106073061-106073323(-)$1	262	132	136	11.9999
UGAG	chr1:115314963-115315310(-)$1	347	232	236	11.9999
UGAg	chr12:74934821-74935122(+)$1	301	85	89	11.9999
ugag	chr19:34892504-34892726(+)$1	222	20	24	11.9999
UGAG	chr17:45387584-45387950(+)$1	366	228	232	11.9999

#otherMatches

#Struct PSSM
gggg	chr7:137561962-137562194(-)$1	232	27	31	11.9999
CC{B	chr17:33337616-33337862(-)$1	246	14	18	11.9999
bb[f	chr6:32942138-32942390(+)$1	252	190	194	11.9999
ff[d	chr19:15348117-15348350(-)$1	233	20	24	11.9999
iiii	chr5:132092875-132093131(-)$1	256	41	45	11.9999
offf	chr20:44054576-44054845(+)$1	269	120	124	11.9999
:eee	chr3:49460778-49461017(-)$1	239	91	95	11.9999
:EEE	chr13:30088000-30088255(-)$1	255	95	99	11.9999
DHHH	chr3:100083429-100083700(-)$1	271	103	107	11.9999
CC::	chr16:723886-724202(+)$1	316	103	107	11.9999
ccll	chr17:64804501-64804773(+)$1	272	188	192	11.9999
nnbb	chr20:62564688-62564959(+)$1	271	18	22	11.9999
dddd	chr11:118472309-118472562(+)$1	253	12	16	11.9999
exxx	chr2:109302791-109303025(+)$1	234	10	14	11.9999
CYYG	chr19:19739405-19739726(-)$1	321	132	136	11.9999
:CCC	chr5:115166222-115166470(-)$1	248	4	8	11.9999
::CC	chr19:17693132-17693362(+)$1	230	8	12	11.9999
GGGG	chr17:17115606-17115892(-)$1	286	57	61	11.9999
&&&e	chr17:80201169-80201461(-)$1	292	101	105	11.9999
++++	chr7:128142369-128142652(+)$1	283	99	103	11.9999
ccnn	chr12:56365627-56365876(+)$1	249	216	220	11.9999
C{CC	chr18:12431163-12431436(+)$1	273	15	19	11.9999
BB}B	chr3:196312725-196312984(+)$1	259	216	220	11.9999
]ddd	chr10:81143610-81143852(-)$1	242	92	96	11.9999
KCCC	chr11:67165285-67165547(+)$1	262	15	19	11.9999
oooo	chr19:14202851-14203087(-)$1	236	143	147	11.9999
FFFF	chr20:3912989-3913270(-)$1	281	118	122	11.9999
ddmm	chr17:42827255-42827545(+)$1	290	125	129	11.9999
b]dd	chr11:119176583-119176847(+)$1	264	115	119	11.9999
+fff	chr1:47684737-47685051(-)$1	314	21	25	11.9999
dd[c	chr19:975264-975506(+)$1	242	14	18	11.9999
gg:g	chr22:24937461-24937693(-)$1	232	96	100	11.9999
aooo	chr6:36822679-36822925(-)$1	246	81	85	11.9999
EKKI	chr17:76168442-76168709(+)$1	267	115	119	11.9999
gggg	chr2:122096495-122096820(-)$1	325	180	184	11.9999
i"""	chr11:107662720-107662991(-)$1	271	106	110	11.9999
::::	chr19:55964337-55964638(-)$1	301	137	141	11.9999
ffff	chr12:31433951-31434208(-)$1	257	112	116	11.9999
ssss	chr19:50436704-50436960(+)$1	256	168	172	11.9999
dddd	chr10:99519966-99520228(+)$1	262	190	194	11.9999
:fff	chr17:40352610-40352843(-)$1	233	0	4	11.9999
:ddd	chr2:128950115-128950358(+)$1	243	56	60	11.9999
HHHH	chr3:49762998-49763316(-)$1	318	106	110	11.9999
cmmm	chr19:12811062-12811308(-)$1	246	8	12	11.9999
c[cc	chr9:110092549-110092802(+)$1	253	28	32	11.9999
CCC{	chr22:19430527-19430759(-)$1	232	89	93	11.9999
::DD	chr22:29902852-29903097(-)$1	245	3	7	11.9999
lfff	chr16:24226266-24226530(+)$1	264	42	46	11.9999
ddqq	chr17:47126807-47127046(+)$1	239	73	77	11.9999
"ccc	chr5:171289126-171289376(-)$1	250	9	13	11.9999
iqqq	chr22:43563151-43563389(-)$1	238	8	12	11.9999
bb[f	chr11:75283332-75283604(+)$1	272	5	9	11.9999
&ggg	chr11:111933537-111933862(+)$1	325	121	125	11.9999
333b	chr10:74035545-74035749(+)$1	204	58	62	11.9999
BB{B	chr11:118915561-118915788(-)$1	227	8	12	11.9999
ff[b	chr19:7977678-7977943(+)$1	265	117	121	11.9999
ZZZD	chr7:75517928-75518203(+)$1	275	265	269	11.9999
ffff	chr1:9673693-9673983(+)$1	290	19	23	11.9999
nfff	chr1:154935563-154935850(-)$1	287	116	120	11.9999
nnnn	chr2:97259849-97260138(-)$1	289	276	280	11.9999
bbmm	chr15:75128411-75128700(-)$1	289	52	56	11.9999
))))	chr6:37142086-37142300(+)$1	214	114	118	11.9999
''''	chr6:32946035-32946260(+)$1	225	131	135	11.9999
dd[c	chr22:19957060-19957326(+)$1	266	77	81	11.9999
eeee	chr12:56633926-56634163(-)$1	237	63	67	11.9999
oooc	chr16:87864098-87864333(-)$1	235	42	46	11.9999
"ccc	chr8:11700679-11700920(-)$1	241	12	16	11.9999
IIII	chr20:32294698-32294952(-)$1	254	14	18	11.9999
[ddd	chr12:113826789-113827046(+)$1	257	74	78	11.9999
iill	chr5:137682953-137683200(+)$1	247	75	79	11.9999
dddd	chr5:179263834-179264111(+)$1	277	240	244	11.9999
:FFF	chr15:91426135-91426388(+)$1	253	3	7	11.9999
gggg	chr16:23584447-23584675(+)$1	228	196	200	11.9999
CZZZ	chr10:106073061-106073323(-)$1	262	132	136	11.9999
b[cc	chr1:115314963-115315310(-)$1	347	232	236	11.9999
D{HH	chr12:74934821-74935122(+)$1	301	85	89	11.9999
FFMM	chr19:34892504-34892726(+)$1	222	20	24	11.9999
]bb]	chr17:45387584-45387950(+)$1	366	228	232	11.9999

#DB
((((	chr7:137561962-137562194(-)$1	1	27	31	11.9999
((.(	chr17:33337616-33337862(-)$1	1	14	18	11.9999
((.(	chr6:32942138-32942390(+)$1	1	190	194	11.9999
((.(	chr19:15348117-15348350(-)$1	1	20	24	11.9999
((((	chr5:132092875-132093131(-)$1	1	41	45	11.9999
.)))	chr20:44054576-44054845(+)$1	1	120	124	11.9999
.(((	chr3:49460778-49461017(-)$1	1	91	95	11.9999
.)))	chr13:30088000-30088255(-)$1	1	95	99	11.9999
((((	chr3:100083429-100083700(-)$1	1	103	107	11.9999
((..	chr16:723886-724202(+)$1	1	103	107	11.9999
((..	chr17:64804501-64804773(+)$1	1	188	192	11.9999
..))	chr20:62564688-62564959(+)$1	1	18	22	11.9999
((((	chr11:118472309-118472562(+)$1	1	12	16	11.9999
(...	chr2:109302791-109303025(+)$1	1	10	14	11.9999
)..)	chr19:19739405-19739726(-)$1	1	132	136	11.9999
.(((	chr5:115166222-115166470(-)$1	1	4	8	11.9999
..((	chr19:17693132-17693362(+)$1	1	8	12	11.9999
((((	chr17:17115606-17115892(-)$1	1	57	61	11.9999
...(	chr17:80201169-80201461(-)$1	1	101	105	11.9999
....	chr7:128142369-128142652(+)$1	1	99	103	11.9999
((..	chr12:56365627-56365876(+)$1	1	216	220	11.9999
(.((	chr18:12431163-12431436(+)$1	1	15	19	11.9999
)).)	chr3:196312725-196312984(+)$1	1	216	220	11.9999
.)))	chr10:81143610-81143852(-)$1	1	92	96	11.9999
.(((	chr11:67165285-67165547(+)$1	1	15	19	11.9999
....	chr19:14202851-14203087(-)$1	1	143	147	11.9999
((((	chr20:3912989-3913270(-)$1	1	118	122	11.9999
((..	chr17:42827255-42827545(+)$1	1	125	129	11.9999
).))	chr11:119176583-119176847(+)$1	1	115	119	11.9999
.(((	chr1:47684737-47685051(-)$1	1	21	25	11.9999
((.(	chr19:975264-975506(+)$1	1	14	18	11.9999
)).(	chr22:24937461-24937693(-)$1	1	96	100	11.9999
(...	chr6:36822679-36822925(-)$1	1	81	85	11.9999
(..(	chr17:76168442-76168709(+)$1	1	115	119	11.9999
((((	chr2:122096495-122096820(-)$1	1	180	184	11.9999
(...	chr11:107662720-107662991(-)$1	1	106	110	11.9999
....	chr19:55964337-55964638(-)$1	1	137	141	11.9999
((((	chr12:31433951-31434208(-)$1	1	112	116	11.9999
....	chr19:50436704-50436960(+)$1	1	168	172	11.9999
((((	chr10:99519966-99520228(+)$1	1	190	194	11.9999
.(((	chr17:40352610-40352843(-)$1	1	0	4	11.9999
.(((	chr2:128950115-128950358(+)$1	1	56	60	11.9999
((((	chr3:49762998-49763316(-)$1	1	106	110	11.9999
(...	chr19:12811062-12811308(-)$1	1	8	12	11.9999
(.((	chr9:110092549-110092802(+)$1	1	28	32	11.9999
(((.	chr22:19430527-19430759(-)$1	1	89	93	11.9999
..((	chr22:29902852-29903097(-)$1	1	3	7	11.9999
.)))	chr16:24226266-24226530(+)$1	1	42	46	11.9999
((..	chr17:47126807-47127046(+)$1	1	73	77	11.9999
.(((	chr5:171289126-171289376(-)$1	1	9	13	11.9999
(...	chr22:43563151-43563389(-)$1	1	8	12	11.9999
((.(	chr11:75283332-75283604(+)$1	1	5	9	11.9999
.(((	chr11:111933537-111933862(+)$1	1	121	125	11.9999
...)	chr10:74035545-74035749(+)$1	1	58	62	11.9999
((.(	chr11:118915561-118915788(-)$1	1	8	12	11.9999
((.(	chr19:7977678-7977943(+)$1	1	117	121	11.9999
...)	chr7:75517928-75518203(+)$1	1	265	269	11.9999
))))	chr1:9673693-9673983(+)$1	1	19	23	11.9999
.)))	chr1:154935563-154935850(-)$1	1	116	120	11.9999
....	chr2:97259849-97260138(-)$1	1	276	280	11.9999
((..	chr15:75128411-75128700(-)$1	1	52	56	11.9999
....	chr6:37142086-37142300(+)$1	1	114	118	11.9999
....	chr6:32946035-32946260(+)$1	1	131	135	11.9999
((.(	chr22:19957060-19957326(+)$1	1	77	81	11.9999
((((	chr12:56633926-56634163(-)$1	1	63	67	11.9999
...)	chr16:87864098-87864333(-)$1	1	42	46	11.9999
.(((	chr8:11700679-11700920(-)$1	1	12	16	11.9999
((((	chr20:32294698-32294952(-)$1	1	14	18	11.9999
.(((	chr12:113826789-113827046(+)$1	1	74	78	11.9999
((..	chr5:137682953-137683200(+)$1	1	75	79	11.9999
((((	chr5:179263834-179264111(+)$1	1	240	244	11.9999
.(((	chr15:91426135-91426388(+)$1	1	3	7	11.9999
))))	chr16:23584447-23584675(+)$1	1	196	200	11.9999
)...	chr10:106073061-106073323(-)$1	1	132	136	11.9999
(.((	chr1:115314963-115315310(-)$1	1	232	236	11.9999
(.((	chr12:74934821-74935122(+)$1	1	85	89	11.9999
((..	chr19:34892504-34892726(+)$1	1	20	24	11.9999
.)).	chr17:45387584-45387950(+)$1	1	228	232	11.9999

#PSSM
U : 0.87	u : 0.12	
G : 0.87	g : 0.12	
A : 0.87	a : 0.12	
G : 0.85	g : 0.14	

#score	935.9999999999998
#seq	78
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_transcript_m3_run1.nuc.txt

#NT
GAGG	chr19:1409867-1410138(+)$1	271	4	8	11.9999
GAGG	chr5:134260171-134260398(+)$1	227	49	53	11.9999
GAGG	chr5:170815082-170815348(+)$1	266	44	48	11.9999
GAGG	chr2:97525500-97525760(-)$1	260	120	124	11.9999
GAGG	chr9:139565636-139565903(+)$1	267	30	34	11.9999
GAGG	chr11:62312834-62313113(-)$1	279	23	27	11.9999
GAGG	chr16:1426111-1426397(-)$1	286	16	20	11.9999
gagg	chr9:140610682-140610945(+)$1	263	5	9	11.9999
GAGG	chr2:54197761-54198043(-)$1	282	1	5	11.9999
GAGG	chr1:568906-569143(-)$1	237	116	120	11.9999
GAGG	chrM:14222-14432(-)$1	210	16	20	11.9999
GAGG	chr11:126146107-126146368(+)$1	261	28	32	11.9999
gagg	chr19:37549460-37549681(+)$1	221	88	92	11.9999
gagg	chr2:97560008-97560236(-)$1	228	34	38	11.9999
GAGG	chr2:172379166-172379424(+)$1	258	110	114	11.9999
GAGG	chr17:7476180-7476531(+)$1	351	79	83	11.9999
GAGG	chr1:1000581-1000850(+)$1	269	164	168	11.9999
GAGG	chr5:99382327-99382558(+)$1	231	50	54	11.9999
GAGG	chr17:37824279-37824595(+)$1	316	41	45	11.9999
GAGG	chr12:132403439-132403691(+)$1	252	209	213	11.9999
gagg	chr7:65338734-65339005(+)$1	271	23	27	11.9999
GAGG	chr21:46644316-46644587(+)$1	271	11	15	11.9999
GAGG	chr13:92000043-92000279(+)$1	236	111	115	11.9999
GAGG	chr4:52710213-52710456(+)$1	243	7	11	11.9999
gagg	chr10:23259503-23259715(+)$1	212	165	169	11.9999
gagg	chr22:20110649-20110903(+)$1	254	78	82	11.9999
GAGG	chr2:145275416-145275679(-)$1	263	17	21	11.9999
GAGG	chr6:37787834-37788101(+)$1	267	41	45	11.9999
GAGG	chr7:6695692-6695966(+)$1	274	27	31	11.9999
GAGG	chr1:245026651-245026912(-)$1	261	26	30	11.9999
GAgg	chr13:92001176-92001429(+)$1	253	23	27	11.9999
GAGG	chr6:33171975-33172229(+)$1	254	1	5	11.9999
GAGG	chr14:102228441-102228754(+)$1	313	85	89	11.9999
GAgg	chr7:77166501-77166742(+)$1	241	17	21	11.9999
GAGG	chr16:88827987-88828259(-)$1	272	24	28	11.9999
GAGG	chr22:19189819-19190076(-)$1	257	4	8	11.9999
gagg	chr16:88587381-88587639(+)$1	258	18	22	11.9999
GAGG	chr11:120356691-120356962(+)$1	271	228	232	11.9999
GAGG	chr21:11085332-11085623(-)$1	291	231	235	11.9999
gagG	chr8:142428620-142428921(+)$1	301	38	42	11.9999
GAGG	chr4:111117595-111117835(-)$1	240	78	82	11.9999
gagg	chr2:97559981-97560208(-)$1	227	6	10	11.9999
GAGG	chr3:101292956-101293225(+)$1	269	85	89	11.9999
GAGG	chr6:33172052-33172287(+)$1	235	41	45	11.9999
gagg	chr2:242829947-242830231(+)$1	284	67	71	11.9999
gagg	chr9:140463547-140463862(-)$1	315	138	142	11.9999
gagg	chr3:158290483-158290767(+)$1	284	5	9	11.9999
GAGG	chrM:14366-14601(-)$1	235	69	73	11.9999
gagg	chr7:64499093-64499386(+)$1	293	55	59	11.9999
gagg	chr7:76626786-76627030(+)$1	244	22	26	11.9999
GAGG	chr1:1561090-1561346(+)$1	256	75	79	11.9999
GAGG	chr1:150594888-150595160(-)$1	272	137	141	11.9999
GAGG	chr16:89940428-89940706(+)$1	278	74	78	11.9999
GAGG	chr5:121674434-121674661(+)$1	227	105	109	11.9999
GAGG	chr16:1405913-1406155(+)$1	242	7	11	11.9999
gagg	chr9:140323132-140323411(+)$1	279	0	4	11.9999
GAGG	chr1:569832-570083(-)$1	251	62	66	11.9999
GAGG	chr19:1408541-1408777(+)$1	236	18	22	11.9999
GAGG	chr22:50032899-50033146(-)$1	247	9	13	11.9999
GAGG	chr17:56408959-56409283(-)$1	324	4	8	11.9999
GAGG	chr6:16148127-16148416(+)$1	289	240	244	11.9999
GAGG	chr19:7708658-7708918(+)$1	260	8	12	11.9999
GAGG	chr17:34171422-34171704(+)$1	282	70	74	11.9999
GAGG	chr15:74701947-74702202(-)$1	255	65	69	11.9999
GAGG	chr19:2270065-2270313(+)$1	248	38	42	11.9999
gagg	chr2:97560172-97560412(-)$1	240	210	214	11.9999
GAGG	chr6:4777164-4777411(+)$1	247	25	29	11.9999
gagg	chr16:2809933-2810212(+)$1	279	10	14	11.9999
GAGG	chr19:54613035-54613314(-)$1	279	3	7	11.9999

#otherMatches

#Struct PSSM
%%%%	chr15:64753117-64753366(+)$1	249	36	40	11.9999
GGGG	chr19:1409867-1410138(+)$1	271	4	8	11.9999
::::	chr5:134260171-134260398(+)$1	227	49	53	11.9999
22dd	chr5:170815082-170815348(+)$1	266	44	48	11.9999
d]hh	chr2:97525500-97525760(-)$1	260	120	124	11.9999
''''	chr9:139565636-139565903(+)$1	267	30	34	11.9999
:::f	chr11:62312834-62313113(-)$1	279	23	27	11.9999
!ddd	chr16:1426111-1426397(-)$1	286	16	20	11.9999
::::	chr9:140610682-140610945(+)$1	263	5	9	11.9999
::DD	chr2:54197761-54198043(-)$1	282	1	5	11.9999
ffff	chr1:568906-569143(-)$1	237	116	120	11.9999
dd!!	chrM:14222-14432(-)$1	210	16	20	11.9999
ssee	chr11:126146107-126146368(+)$1	261	28	32	11.9999
d[gg	chr19:37549460-37549681(+)$1	221	88	92	11.9999
[a[a	chr2:97560008-97560236(-)$1	228	34	38	11.9999
333b	chr2:172379166-172379424(+)$1	258	110	114	11.9999
::::	chr17:7476180-7476531(+)$1	351	79	83	11.9999
dddq	chr1:1000581-1000850(+)$1	269	164	168	11.9999
2bb2	chr5:99382327-99382558(+)$1	231	50	54	11.9999
::cc	chr17:37824279-37824595(+)$1	316	41	45	11.9999
333h	chr12:132403439-132403691(+)$1	252	209	213	11.9999
pppp	chr7:65338734-65339005(+)$1	271	23	27	11.9999
{BBK	chr21:46644316-46644587(+)$1	271	11	15	11.9999
[ddd	chr13:92000043-92000279(+)$1	236	111	115	11.9999
EEE:	chr4:52710213-52710456(+)$1	243	7	11	11.9999
::::	chr10:23259503-23259715(+)$1	212	165	169	11.9999
[a##	chr22:20110649-20110903(+)$1	254	78	82	11.9999
"""c	chr2:145275416-145275679(-)$1	263	17	21	11.9999
"""c	chr6:37787834-37788101(+)$1	267	41	45	11.9999
))))	chr7:6695692-6695966(+)$1	274	27	31	11.9999
nnnc	chr1:245026651-245026912(-)$1	261	26	30	11.9999
::bb	chr13:92001176-92001429(+)$1	253	23	27	11.9999
GGGG	chr6:33171975-33172229(+)$1	254	1	5	11.9999
a]bb	chr14:102228441-102228754(+)$1	313	85	89	11.9999
LLLB	chr7:77166501-77166742(+)$1	241	17	21	11.9999
d:a[	chr16:88827987-88828259(-)$1	272	24	28	11.9999
::ff	chr22:19189819-19190076(-)$1	257	4	8	11.9999
DDDE	chr16:88587381-88587639(+)$1	258	18	22	11.9999
::JJ	chr11:120356691-120356962(+)$1	271	228	232	11.9999
22a]	chr21:11085332-11085623(-)$1	291	231	235	11.9999
]hhh	chr8:142428620-142428921(+)$1	301	38	42	11.9999
nndd	chr4:111117595-111117835(-)$1	240	78	82	11.9999
GGGG	chr2:97559981-97560208(-)$1	227	6	10	11.9999
qqgg	chr3:101292956-101293225(+)$1	269	85	89	11.9999
ffff	chr6:33172052-33172287(+)$1	235	41	45	11.9999
ddd[	chr2:242829947-242830231(+)$1	284	67	71	11.9999
qqqc	chr9:140463547-140463862(-)$1	315	138	142	11.9999
::::	chr3:158290483-158290767(+)$1	284	5	9	11.9999
iiid	chrM:14366-14601(-)$1	235	69	73	11.9999
LLLB	chr7:64499093-64499386(+)$1	293	55	59	11.9999
::::	chr7:76626786-76627030(+)$1	244	22	26	11.9999
22ff	chr1:1561090-1561346(+)$1	256	75	79	11.9999
::ee	chr1:150594888-150595160(-)$1	272	137	141	11.9999
nnbb	chr16:89940428-89940706(+)$1	278	74	78	11.9999
cccc	chr5:121674434-121674661(+)$1	227	105	109	11.9999
LLDD	chr16:1405913-1406155(+)$1	242	7	11	11.9999
::::	chr9:140323132-140323411(+)$1	279	0	4	11.9999
2ccc	chr1:569832-570083(-)$1	251	62	66	11.9999
G::e	chr19:1408541-1408777(+)$1	236	18	22	11.9999
"""c	chr22:50032899-50033146(-)$1	247	9	13	11.9999
GGGG	chr17:56408959-56409283(-)$1	324	4	8	11.9999
ffff	chr6:16148127-16148416(+)$1	289	240	244	11.9999
eeee	chr19:7708658-7708918(+)$1	260	8	12	11.9999
oooo	chr17:34171422-34171704(+)$1	282	70	74	11.9999
:eee	chr15:74701947-74702202(-)$1	255	65	69	11.9999
e[ee	chr19:2270065-2270313(+)$1	248	38	42	11.9999
a:::	chr2:97560172-97560412(-)$1	240	210	214	11.9999
{BBd	chr6:4777164-4777411(+)$1	247	25	29	11.9999
eeee	chr16:2809933-2810212(+)$1	279	10	14	11.9999
::::	chr19:54613035-54613314(-)$1	279	3	7	11.9999

#DB
....	chr15:64753117-64753366(+)$1	1	36	40	11.9999
((((	chr19:1409867-1410138(+)$1	1	4	8	11.9999
....	chr5:134260171-134260398(+)$1	1	49	53	11.9999
..))	chr5:170815082-170815348(+)$1	1	44	48	11.9999
).))	chr2:97525500-97525760(-)$1	1	120	124	11.9999
....	chr9:139565636-139565903(+)$1	1	30	34	11.9999
...(	chr11:62312834-62313113(-)$1	1	23	27	11.9999
.(((	chr16:1426111-1426397(-)$1	1	16	20	11.9999
....	chr9:140610682-140610945(+)$1	1	5	9	11.9999
..((	chr2:54197761-54198043(-)$1	1	1	5	11.9999
((((	chr1:568906-569143(-)$1	1	116	120	11.9999
((..	chrM:14222-14432(-)$1	1	16	20	11.9999
..))	chr11:126146107-126146368(+)$1	1	28	32	11.9999
(.((	chr19:37549460-37549681(+)$1	1	88	92	11.9999
.(.(	chr2:97560008-97560236(-)$1	1	34	38	11.9999
...)	chr2:172379166-172379424(+)$1	1	110	114	11.9999
....	chr17:7476180-7476531(+)$1	1	79	83	11.9999
(((.	chr1:1000581-1000850(+)$1	1	164	168	11.9999
.)).	chr5:99382327-99382558(+)$1	1	50	54	11.9999
..((	chr17:37824279-37824595(+)$1	1	41	45	11.9999
...)	chr12:132403439-132403691(+)$1	1	209	213	11.9999
....	chr7:65338734-65339005(+)$1	1	23	27	11.9999
.((.	chr21:46644316-46644587(+)$1	1	11	15	11.9999
.(((	chr13:92000043-92000279(+)$1	1	111	115	11.9999
(((.	chr4:52710213-52710456(+)$1	1	7	11	11.9999
....	chr10:23259503-23259715(+)$1	1	165	169	11.9999
.(..	chr22:20110649-20110903(+)$1	1	78	82	11.9999
...(	chr2:145275416-145275679(-)$1	1	17	21	11.9999
...(	chr6:37787834-37788101(+)$1	1	41	45	11.9999
....	chr7:6695692-6695966(+)$1	1	27	31	11.9999
...)	chr1:245026651-245026912(-)$1	1	26	30	11.9999
..((	chr13:92001176-92001429(+)$1	1	23	27	11.9999
((((	chr6:33171975-33172229(+)$1	1	1	5	11.9999
).))	chr14:102228441-102228754(+)$1	1	85	89	11.9999
...(	chr7:77166501-77166742(+)$1	1	17	21	11.9999
).(.	chr16:88827987-88828259(-)$1	1	24	28	11.9999
..((	chr22:19189819-19190076(-)$1	1	4	8	11.9999
((((	chr16:88587381-88587639(+)$1	1	18	22	11.9999
..))	chr11:120356691-120356962(+)$1	1	228	232	11.9999
..).	chr21:11085332-11085623(-)$1	1	231	235	11.9999
.)))	chr8:142428620-142428921(+)$1	1	38	42	11.9999
..))	chr4:111117595-111117835(-)$1	1	78	82	11.9999
((((	chr2:97559981-97560208(-)$1	1	6	10	11.9999
..))	chr3:101292956-101293225(+)$1	1	85	89	11.9999
((((	chr6:33172052-33172287(+)$1	1	41	45	11.9999
(((.	chr2:242829947-242830231(+)$1	1	67	71	11.9999
...)	chr9:140463547-140463862(-)$1	1	138	142	11.9999
....	chr3:158290483-158290767(+)$1	1	5	9	11.9999
((((	chrM:14366-14601(-)$1	1	69	73	11.9999
...(	chr7:64499093-64499386(+)$1	1	55	59	11.9999
....	chr7:76626786-76627030(+)$1	1	22	26	11.9999
..))	chr1:1561090-1561346(+)$1	1	75	79	11.9999
..((	chr1:150594888-150595160(-)$1	1	137	141	11.9999
..))	chr16:89940428-89940706(+)$1	1	74	78	11.9999
))))	chr5:121674434-121674661(+)$1	1	105	109	11.9999
..((	chr16:1405913-1406155(+)$1	1	7	11	11.9999
....	chr9:140323132-140323411(+)$1	1	0	4	11.9999
.)))	chr1:569832-570083(-)$1	1	62	66	11.9999
(..(	chr19:1408541-1408777(+)$1	1	18	22	11.9999
...(	chr22:50032899-50033146(-)$1	1	9	13	11.9999
((((	chr17:56408959-56409283(-)$1	1	4	8	11.9999
))))	chr6:16148127-16148416(+)$1	1	240	244	11.9999
((((	chr19:7708658-7708918(+)$1	1	8	12	11.9999
....	chr17:34171422-34171704(+)$1	1	70	74	11.9999
.(((	chr15:74701947-74702202(-)$1	1	65	69	11.9999
(.((	chr19:2270065-2270313(+)$1	1	38	42	11.9999
)...	chr2:97560172-97560412(-)$1	1	210	214	11.9999
.(((	chr6:4777164-4777411(+)$1	1	25	29	11.9999
((((	chr16:2809933-2810212(+)$1	1	10	14	11.9999
....	chr19:54613035-54613314(-)$1	1	3	7	11.9999

#PSSM
G : 0.74	g : 0.25	
A : 0.74	a : 0.25	
G : 0.71	g : 0.28	
G : 0.72	g : 0.27	

#score	839.9999999999999
#seq	70
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_CDS_m3_run1.nuc.txt

#NT
CAGCUGA	chr20:55967553-55967831(+)$1	278	178	185	13.8571
CAGCUGC	chr9:140347182-140347419(-)$1	237	9	16	17.3492
CUGCUGC	chr6:26409589-26409862(+)$1	273	233	240	13.9365
CAGCUGA	chr2:101652301-101652591(-)$1	290	243	250	13.8571
CAGCUUC	chr12:133358978-133359243(-)$1	265	161	168	13.2222
CAGCUGC	chr3:49160342-49160633(-)$1	291	243	250	17.3492
CAGCUGC	chr19:2219952-2220236(+)$1	284	61	68	17.3492
CAGCUGU	chr1:153580061-153580367(-)$1	306	100	107	13.8571
CGGCUGC	chr16:8988595-8988899(-)$1	304	117	124	13.5396
CAGCUGG	chr19:5222123-5222409(-)$1	286	230	237	14.0952
CUGCUGC	chr20:30147262-30147534(+)$1	272	107	114	13.9365
CAGCUGA	chr16:1825163-1825424(+)$1	261	55	62	13.8571
CAGCUGG	chr1:46744810-46745090(-)$1	280	223	230	14.0952
CAGCUGC	chr11:61032409-61032671(-)$1	262	89	96	17.3492
CUGCUGC	chr14:24112227-24112475(+)$1	248	163	170	13.9365
CAGCUGC	chr19:1256839-1257102(+)$1	263	210	217	17.3492
CUGCUGC	chr3:184052354-184052630(+)$1	276	162	169	13.9365
CAUCUGC	chr17:40063721-40064000(-)$1	279	239	246	12.9841
CAGCUGC	chr17:79526316-79526566(-)$1	250	35	42	17.3492
CAGCUAC	chr2:27666675-27666923(+)$1	248	194	201	13.2222
CAGCUGC	chr8:145620649-145620915(-)$1	266	19	26	17.3492
CAGCUAC	chr3:197260326-197260625(-)$1	299	279	286	13.2222
CAGCUCC	chr14:24646555-24646819(+)$1	264	21	28	13.4603
CACCUGC	chr16:31477025-31477301(+)$1	276	210	217	12.9841
CAGCUUC	chr20:2843296-2843561(+)$1	265	200	207	13.2222
CAGCUGC	chr11:488050-488310(+)$1	260	226	233	17.3492
CGGCUGC	chr21:47566139-47566379(-)$1	240	46	53	13.5396
CAGCUCC	chr19:55710167-55710438(-)$1	271	224	231	13.4603
CAGCUGG	chr19:2121773-2122067(-)$1	294	41	48	14.0952
CUGCUGC	chr19:49119359-49119662(-)$1	303	54	61	13.9365
CAGCUGC	chr3:47048897-47049152(+)$1	255	24	31	17.3492
CUGCUGC	chr19:1270989-1271233(+)$1	244	52	59	13.9365
CAGCUGC	chr3:38417620-38417948(+)$1	328	142	149	17.3492
CAGCUGA	chr17:77809393-77809689(-)$1	296	191	198	13.8571
CAGCUCC	chr11:57095789-57096064(-)$1	275	185	192	13.4603
CAUCUGC	chr16:31098890-31099142(-)$1	252	222	229	12.9841
CAGCUGU	chr20:34214168-34214415(-)$1	247	69	76	13.8571
CAACUGC	chr16:81735106-81735372(+)$1	266	206	213	12.9841
CAGCUCC	chr6:43592695-43592972(-)$1	277	220	227	13.4603
CAGCUGC	chr19:2272582-2272848(+)$1	266	182	189	17.3492
cagcugu	chr2:27315046-27315303(+)$1	257	64	71	13.8571
CAGCUGG	chr10:99517250-99517505(+)$1	255	65	72	14.0952
UAGCUGC	chr20:45912283-45912550(-)$1	267	192	199	12.9047
AAGCUGC	chrX:70464177-70464485(-)$1	308	191	198	12.7460
CAGCUGG	chr1:153914467-153914737(-)$1	270	61	68	14.0952
CACCUGC	chr22:37903843-37904112(-)$1	269	84	91	12.9841
CUGCUGC	chr11:65390795-65391072(+)$1	277	233	240	13.9365
CAGCUGC	chr1:3427355-3427626(-)$1	271	41	48	17.3492
CAGCUGC	chr21:46696954-46697236(-)$1	282	78	85	17.3492
UAGCUGC	chr12:57588614-57588872(+)$1	258	25	32	12.9047
UAGCUGC	chr17:53392427-53392717(+)$1	290	101	108	12.9047
CAACUGC	chr11:65318835-65319093(-)$1	258	185	192	12.9841
CCGCUGC	chr1:68151912-68152147(+)$1	235	107	114	13.3809
CAGCUCC	chr2:220080799-220081044(-)$1	245	100	107	13.4603
CAGCUGG	chr17:40925582-40925859(+)$1	277	199	206	14.0952
CAGCUGC	chr1:226109971-226110264(-)$1	293	109	116	17.3492
CAGCUGC	chr2:97492419-97492696(+)$1	277	263	270	17.3492
CAGCUGC	chr22:44332770-44333055(+)$1	285	66	73	17.3492
CAGCUGG	chr1:21926006-21926278(-)$1	272	70	77	14.0952
CGGCUGC	chr6:41557328-41557627(+)$1	299	198	205	13.5396
CAGCUGU	chr3:52402571-52402875(+)$1	304	124	131	13.8571
CUGCUGC	chr16:72141081-72141357(+)$1	276	242	249	13.9365

#otherMatches

#Struct PSSM
mmmmddd	chr17:77921503-77921850(-)$1	347	93	100	17.3492
""a[ccc	chr20:55967553-55967831(+)$1	278	178	185	13.8571
===mmmm	chr9:140347182-140347419(-)$1	237	9	16	17.3492
ZZDDDDY	chr6:26409589-26409862(+)$1	273	233	240	13.9365
BBccc[c	chr2:101652301-101652591(-)$1	290	243	250	13.8571
ggggggg	chr12:133358978-133359243(-)$1	265	161	168	13.2222
ffppppp	chr3:49160342-49160633(-)$1	291	243	250	17.3492
$$$$$dd	chr19:2219952-2220236(+)$1	284	61	68	17.3492
ddd]ccc	chr1:153580061-153580367(-)$1	306	100	107	13.8571
iiii:ff	chr16:8988595-8988899(-)$1	304	117	124	13.5396
EEE::bb	chr19:5222123-5222409(-)$1	286	230	237	14.0952
DDDDDBB	chr20:30147262-30147534(+)$1	272	107	114	13.9365
LLDDDD:	chr16:1825163-1825424(+)$1	261	55	62	13.8571
[a[cccn	chr1:46744810-46745090(-)$1	280	223	230	14.0952
FFFFFCC	chr11:61032409-61032671(-)$1	262	89	96	17.3492
GGGGGdd	chr14:24112227-24112475(+)$1	248	163	170	13.9365
gggoooo	chr19:1256839-1257102(+)$1	263	210	217	17.3492
nnndddd	chr3:184052354-184052630(+)$1	276	162	169	13.9365
nnbb]cc	chr17:40063721-40064000(-)$1	279	239	246	12.9841
uuuuuuu	chr17:79526316-79526566(-)$1	250	35	42	17.3492
ccclllc	chr2:27666675-27666923(+)$1	248	194	201	13.2222
H:::eee	chr8:145620649-145620915(-)$1	266	19	26	17.3492
CCCZZZE	chr3:197260326-197260625(-)$1	299	279	286	13.2222
{GGGGGG	chr14:24646555-24646819(+)$1	264	21	28	13.4603
CCYYEEE	chr16:31477025-31477301(+)$1	276	210	217	12.9841
GGGGGGG	chr20:2843296-2843561(+)$1	265	200	207	13.2222
CC}A::d	chr11:488050-488310(+)$1	260	226	233	17.3492
ggg:::C	chr21:47566139-47566379(-)$1	240	46	53	13.5396
FFFFFFY	chr19:55710167-55710438(-)$1	271	224	231	13.4603
cc333ee	chr19:2121773-2122067(-)$1	294	41	48	14.0952
bb[dddd	chr19:49119359-49119662(-)$1	303	54	61	13.9365
gggeeee	chr3:47048897-47049152(+)$1	255	24	31	17.3492
DDDD:::	chr19:1270989-1271233(+)$1	244	52	59	13.9365
cc]====	chr3:38417620-38417948(+)$1	328	142	149	17.3492
YYDDDD}	chr17:77809393-77809689(-)$1	296	191	198	13.8571
fff::::	chr11:57095789-57096064(-)$1	275	185	192	13.4603
CCCCCC}	chr16:31098890-31099142(-)$1	252	222	229	12.9841
obbdddd	chr20:34214168-34214415(-)$1	247	69	76	13.8571
CYYEEEE	chr16:81735106-81735372(+)$1	266	206	213	12.9841
b::::::	chr6:43592695-43592972(-)$1	277	220	227	13.4603
]ffffff	chr19:2272582-2272848(+)$1	266	182	189	17.3492
ffffff>	chr2:27315046-27315303(+)$1	257	64	71	13.8571
2ffffff	chr10:99517250-99517505(+)$1	255	65	72	14.0952
!bb!!ff	chr20:45912283-45912550(-)$1	267	192	199	12.9047
::eeeee	chrX:70464177-70464485(-)$1	308	191	198	12.7460
llccc]d	chr1:153914467-153914737(-)$1	270	61	68	14.0952
C{A{CCC	chr22:37903843-37904112(-)$1	269	84	91	12.9841
22a22gg	chr11:65390795-65391072(+)$1	277	233	240	13.9365
DD{BBDD	chr1:3427355-3427626(-)$1	271	41	48	17.3492
cc]ffff	chr21:46696954-46697236(-)$1	282	78	85	17.3492
dbbcccb	chr12:57588614-57588872(+)$1	258	25	32	12.9047
eeemmmm	chr17:53392427-53392717(+)$1	290	101	108	12.9047
a22dddd	chr11:65318835-65319093(-)$1	258	185	192	12.9841
GGGGGFF	chr1:68151912-68152147(+)$1	235	107	114	13.3809
eeee:::	chr2:220080799-220081044(-)$1	245	100	107	13.4603
eeee555	chr17:40925582-40925859(+)$1	277	199	206	14.0952
gggggbb	chr1:226109971-226110264(-)$1	293	109	116	17.3492
GGGG}BB	chr2:97492419-97492696(+)$1	277	263	270	17.3492
fff]ccc	chr22:44332770-44333055(+)$1	285	66	73	17.3492
iiiiiii	chr1:21926006-21926278(-)$1	272	70	77	14.0952
fdddd""	chr6:41557328-41557627(+)$1	299	198	205	13.5396
c:bb[ee	chr3:52402571-52402875(+)$1	304	124	131	13.8571
gggdddd	chr16:72141081-72141357(+)$1	276	242	249	13.9365

#DB
....)))	chr17:77921503-77921850(-)$1	1	93	100	17.3492
..(.(((	chr20:55967553-55967831(+)$1	1	178	185	13.8571
(((....	chr9:140347182-140347419(-)$1	1	9	16	17.3492
..)))).	chr6:26409589-26409862(+)$1	1	233	240	13.9365
))(((.(	chr2:101652301-101652591(-)$1	1	243	250	13.8571
(((((((	chr12:133358978-133359243(-)$1	1	161	168	13.2222
((.....	chr3:49160342-49160633(-)$1	1	243	250	17.3492
.....((	chr19:2219952-2220236(+)$1	1	61	68	17.3492
))).)))	chr1:153580061-153580367(-)$1	1	100	107	13.8571
)))).((	chr16:8988595-8988899(-)$1	1	117	124	13.5396
)))..((	chr19:5222123-5222409(-)$1	1	230	237	14.0952
(((((((	chr20:30147262-30147534(+)$1	1	107	114	13.9365
..((((.	chr16:1825163-1825424(+)$1	1	55	62	13.8571
.(.(((.	chr1:46744810-46745090(-)$1	1	223	230	14.0952
(((((((	chr11:61032409-61032671(-)$1	1	89	96	17.3492
(((((((	chr14:24112227-24112475(+)$1	1	163	170	13.9365
(((....	chr19:1256839-1257102(+)$1	1	210	217	17.3492
...))))	chr3:184052354-184052630(+)$1	1	162	169	13.9365
..)).))	chr17:40063721-40064000(-)$1	1	239	246	12.9841
.......	chr17:79526316-79526566(-)$1	1	35	42	17.3492
(((...)	chr2:27666675-27666923(+)$1	1	194	201	13.2222
(...(((	chr8:145620649-145620915(-)$1	1	19	26	17.3492
)))...)	chr3:197260326-197260625(-)$1	1	279	286	13.2222
.((((((	chr14:24646555-24646819(+)$1	1	21	28	13.4603
))..)))	chr16:31477025-31477301(+)$1	1	210	217	12.9841
)))))))	chr20:2843296-2843561(+)$1	1	200	207	13.2222
)).)..(	chr11:488050-488310(+)$1	1	226	233	17.3492
)))...(	chr21:47566139-47566379(-)$1	1	46	53	13.5396
)))))).	chr19:55710167-55710438(-)$1	1	224	231	13.4603
))...))	chr19:2121773-2122067(-)$1	1	41	48	14.0952
((.((((	chr19:49119359-49119662(-)$1	1	54	61	13.9365
(((((((	chr3:47048897-47049152(+)$1	1	24	31	17.3492
((((...	chr19:1270989-1271233(+)$1	1	52	59	13.9365
)).))))	chr3:38417620-38417948(+)$1	1	142	149	17.3492
..)))).	chr17:77809393-77809689(-)$1	1	191	198	13.8571
)))....	chr11:57095789-57096064(-)$1	1	185	192	13.4603
)))))).	chr16:31098890-31099142(-)$1	1	222	229	12.9841
.))))))	chr20:34214168-34214415(-)$1	1	69	76	13.8571
)..))))	chr16:81735106-81735372(+)$1	1	206	213	12.9841
)......	chr6:43592695-43592972(-)$1	1	220	227	13.4603
.))))))	chr19:2272582-2272848(+)$1	1	182	189	17.3492
)))))).	chr2:27315046-27315303(+)$1	1	64	71	13.8571
.))))))	chr10:99517250-99517505(+)$1	1	65	72	14.0952
.((..((	chr20:45912283-45912550(-)$1	1	192	199	12.9047
..(((((	chrX:70464177-70464485(-)$1	1	191	198	12.7460
..))).)	chr1:153914467-153914737(-)$1	1	61	68	14.0952
(.(.(((	chr22:37903843-37904112(-)$1	1	84	91	12.9841
..)..))	chr11:65390795-65391072(+)$1	1	233	240	13.9365
((.((((	chr1:3427355-3427626(-)$1	1	41	48	17.3492
)).))))	chr21:46696954-46697236(-)$1	1	78	85	17.3492
)))))))	chr12:57588614-57588872(+)$1	1	25	32	12.9047
(((....	chr17:53392427-53392717(+)$1	1	101	108	12.9047
)..))))	chr11:65318835-65319093(-)$1	1	185	192	12.9841
)))))))	chr1:68151912-68152147(+)$1	1	107	114	13.3809
))))...	chr2:220080799-220081044(-)$1	1	100	107	13.4603
))))...	chr17:40925582-40925859(+)$1	1	199	206	14.0952
(((((((	chr1:226109971-226110264(-)$1	1	109	116	17.3492
)))).))	chr2:97492419-97492696(+)$1	1	263	270	17.3492
))).)))	chr22:44332770-44333055(+)$1	1	66	73	17.3492
)))))))	chr1:21926006-21926278(-)$1	1	70	77	14.0952
)((((..	chr6:41557328-41557627(+)$1	1	198	205	13.5396
).((.((	chr3:52402571-52402875(+)$1	1	124	131	13.8571
)))((((	chr16:72141081-72141357(+)$1	1	242	249	13.9365

#PSSM
C : 0.92	U : 0.04	c : 0.01	A : 0.01	
A : 0.79	U : 0.12	G : 0.04	a : 0.01	C : 0.01	
G : 0.88	U : 0.03	C : 0.03	A : 0.03	g : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.84	C : 0.07	U : 0.03	A : 0.03	g : 0.01	
C : 0.76	G : 0.11	A : 0.06	U : 0.04	u : 0.01	

#score	919.5079365079358
#seq	63
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_CDS_m3_run2.nuc.txt

#NT
UGGA	chr17:74287802-74288027(-)$1	225	116	120	12.0000
UGGA	chr14:39736596-39736838(+)$1	242	68	72	12.0000
UGGA	chr17:29632050-29632282(+)$1	232	75	79	12.0000
UGGA	chr3:99549300-99549541(+)$1	241	73	77	12.0000
UGGA	chr17:74288472-74288769(-)$1	297	160	164	12.0000
UGGA	chr20:30947465-30947735(+)$1	270	146	150	12.0000
UGGA	chr17:74288346-74288606(-)$1	260	120	124	12.0000
UGGA	chr14:24002712-24003013(+)$1	301	62	66	12.0000
UGGA	chr8:41814685-41814932(-)$1	247	7	11	12.0000
UGGA	chr17:29622109-29622374(+)$1	265	167	171	12.0000
UGGA	chr1:1689671-1689937(-)$1	266	8	12	12.0000
UGGA	chr3:99567708-99567970(+)$1	262	45	49	12.0000
UGGA	chr1:1689858-1690096(-)$1	238	158	162	12.0000
UGGA	chr12:121125100-121125338(+)$1	238	163	167	12.0000
UGGA	chr20:30947420-30947665(+)$1	245	31	35	12.0000
UGGA	chr8:94752559-94752810(-)$1	251	88	92	12.0000
UGGA	chr17:80788967-80789215(+)$1	248	45	49	12.0000
ugga	chr17:74288881-74289131(-)$1	250	132	136	12.0000
ugga	chr17:74288818-74289081(-)$1	263	82	86	12.0000
UGGA	chr11:9286484-9286849(-)$1	365	303	307	12.0000
ugga	chr17:74288684-74288958(-)$1	274	19	23	12.0000
UGGA	chr19:59073599-59073870(+)$1	271	20	24	12.0000
UGGA	chr17:29622740-29622984(+)$1	244	57	61	12.0000
UGGA	chr2:231902561-231902869(+)$1	308	206	210	12.0000
UGGA	chr7:127669051-127669306(+)$1	255	201	205	12.0000
UGGA	chr11:940786-941056(+)$1	270	226	230	12.0000
UGGA	chr2:201728724-201728964(-)$1	240	137	141	12.0000
UGGA	chr3:99567350-99567592(+)$1	242	184	188	12.0000
UGGA	chr2:240921484-240921741(-)$1	257	177	181	12.0000
UGGA	chr12:27132598-27132880(-)$1	282	36	40	12.0000
UGGA	chr8:94752610-94752863(-)$1	253	141	145	12.0000
UGGA	chr17:74288931-74289173(-)$1	242	29	33	12.0000
UGGA	chr12:50898802-50899051(+)$1	249	137	141	12.0000
UGGA	chr17:74288569-74288819(-)$1	250	210	214	12.0000
UGGA	chr17:76723594-76723859(-)$1	265	125	129	12.0000
ugga	chr17:74288199-74288433(-)$1	234	97	101	12.0000
UGGA	chr17:74288258-74288504(-)$1	246	18	22	12.0000
UGGA	chr17:80789584-80789875(+)$1	291	89	93	12.0000
UGGA	chr2:97482368-97482640(+)$1	272	7	11	12.0000
UGGA	chr17:29622546-29622792(+)$1	246	44	48	12.0000
UGGA	chr3:99569568-99569897(+)$1	329	169	173	12.0000
UGGA	chr7:6075000-6075263(-)$1	263	130	134	12.0000
UGGA	chr19:57986964-57987250(-)$1	286	69	73	12.0000
UGGA	chr3:99567146-99567389(+)$1	243	185	189	12.0000
UGGA	chr19:59073422-59073737(+)$1	315	11	15	12.0000
ugga	chr17:74288036-74288310(-)$1	274	94	98	12.0000
UGGA	chr6:159047623-159047857(+)$1	234	28	32	12.0000
UGGA	chr7:104752861-104753089(-)$1	228	68	72	12.0000
UGGA	chr2:11721003-11721259(+)$1	256	54	58	12.0000
ugga	chr17:74287954-74288216(-)$1	262	0	4	12.0000
UGGA	chr17:80788856-80789150(+)$1	294	9	13	12.0000
UGGA	chr3:185538711-185538987(-)$1	276	0	4	12.0000
UGGA	chr16:48399219-48399570(-)$1	351	9	13	12.0000
UGGA	chr17:48545634-48545886(+)$1	252	37	41	12.0000
UGGA	chr17:29632112-29632463(+)$1	351	13	17	12.0000
UGGA	chr2:201728764-201729006(-)$1	242	179	183	12.0000
UGGA	chr1:247094471-247094745(-)$1	274	218	222	12.0000
UGGA	chr12:104682486-104682742(+)$1	256	237	241	12.0000
UGGA	chr7:923745-924047(+)$1	302	223	227	12.0000
UGGA	chr17:29622328-29622594(+)$1	266	3	7	12.0000
UGGA	chr17:74288406-74288672(-)$1	266	63	67	12.0000
UGGA	chr1:91967158-91967408(+)$1	250	69	73	12.0000
UGGA	chr17:80788037-80788281(+)$1	244	135	139	12.0000
UGGA	chr12:50135945-50136257(+)$1	312	221	225	12.0000
UGGA	chr3:99567453-99567697(+)$1	244	81	85	12.0000
UGGA	chr2:27998725-27998979(+)$1	254	28	32	12.0000
UGGA	chr19:56188480-56188734(+)$1	254	44	48	12.0000
UGGA	chr17:80789358-80789625(+)$1	267	46	50	12.0000
UGGA	chr17:44626328-44626584(-)$1	256	50	54	12.0000
UGGA	chr7:141478453-141478703(+)$1	250	106	110	12.0000
UGGA	chr2:201728806-201729067(-)$1	261	24	28	12.0000
UGGA	chr7:6074953-6075200(-)$1	247	67	71	12.0000
UGGA	chr3:49756505-49756844(+)$1	339	136	140	12.0000
UGGA	chr9:139115446-139115710(-)$1	264	92	96	12.0000
UGGA	chr21:46281466-46281750(-)$1	284	123	127	12.0000
UGGA	chr8:94752668-94752932(-)$1	264	210	214	12.0000

#otherMatches

#Struct PSSM
nccc	chr3:99567523-99567841(+)$1	318	11	15	12.0000
eeee	chr17:74287802-74288027(-)$1	225	116	120	12.0000
eee!	chr14:39736596-39736838(+)$1	242	68	72	12.0000
bb((	chr17:29632050-29632282(+)$1	232	75	79	12.0000
ffff	chr3:99549300-99549541(+)$1	241	73	77	12.0000
DDDD	chr17:74288472-74288769(-)$1	297	160	164	12.0000
mccc	chr20:30947465-30947735(+)$1	270	146	150	12.0000
dddd	chr17:74288346-74288606(-)$1	260	120	124	12.0000
+bb[	chr14:24002712-24003013(+)$1	301	62	66	12.0000
DDLL	chr8:41814685-41814932(-)$1	247	7	11	12.0000
llld	chr17:29622109-29622374(+)$1	265	167	171	12.0000
[ccc	chr1:1689671-1689937(-)$1	266	8	12	12.0000
eeoo	chr3:99567708-99567970(+)$1	262	45	49	12.0000
pppe	chr1:1689858-1690096(-)$1	238	158	162	12.0000
eeee	chr12:121125100-121125338(+)$1	238	163	167	12.0000
ccqq	chr20:30947420-30947665(+)$1	245	31	35	12.0000
hhhh	chr8:94752559-94752810(-)$1	251	88	92	12.0000
DDKK	chr17:80788967-80789215(+)$1	248	45	49	12.0000
[ccc	chr17:74288881-74289131(-)$1	250	132	136	12.0000
[ccc	chr17:74288818-74289081(-)$1	263	82	86	12.0000
ddd[	chr11:9286484-9286849(-)$1	365	303	307	12.0000
[ccc	chr17:74288684-74288958(-)$1	274	19	23	12.0000
gggg	chr19:59073599-59073870(+)$1	271	20	24	12.0000
fff2	chr17:29622740-29622984(+)$1	244	57	61	12.0000
cc22	chr2:231902561-231902869(+)$1	308	206	210	12.0000
a]dd	chr7:127669051-127669306(+)$1	255	201	205	12.0000
gggg	chr11:940786-941056(+)$1	270	226	230	12.0000
gggg	chr2:201728724-201728964(-)$1	240	137	141	12.0000
:fff	chr3:99567350-99567592(+)$1	242	184	188	12.0000
mmbb	chr2:240921484-240921741(-)$1	257	177	181	12.0000
!ddd	chr12:27132598-27132880(-)$1	282	36	40	12.0000
hhhh	chr8:94752610-94752863(-)$1	253	141	145	12.0000
[amm	chr17:74288931-74289173(-)$1	242	29	33	12.0000
::::	chr12:50898802-50899051(+)$1	249	137	141	12.0000
dddd	chr17:74288569-74288819(-)$1	250	210	214	12.0000
dddd	chr17:76723594-76723859(-)$1	265	125	129	12.0000
eeee	chr17:74288199-74288433(-)$1	234	97	101	12.0000
DDDD	chr17:74288258-74288504(-)$1	246	18	22	12.0000
nndd	chr17:80789584-80789875(+)$1	291	89	93	12.0000
:fff	chr2:97482368-97482640(+)$1	272	7	11	12.0000
[ddd	chr17:29622546-29622792(+)$1	246	44	48	12.0000
fddd	chr3:99569568-99569897(+)$1	329	169	173	12.0000
[ccc	chr7:6075000-6075263(-)$1	263	130	134	12.0000
:::e	chr19:57986964-57987250(-)$1	286	69	73	12.0000
bddd	chr3:99567146-99567389(+)$1	243	185	189	12.0000
JJJJ	chr19:59073422-59073737(+)$1	315	11	15	12.0000
dddd	chr17:74288036-74288310(-)$1	274	94	98	12.0000
CCBB	chr6:159047623-159047857(+)$1	234	28	32	12.0000
fddd	chr7:104752861-104753089(-)$1	228	68	72	12.0000
dddd	chr2:11721003-11721259(+)$1	256	54	58	12.0000
dddd	chr17:74287954-74288216(-)$1	262	0	4	12.0000
KGGG	chr17:80788856-80789150(+)$1	294	9	13	12.0000
:ccc	chr3:185538711-185538987(-)$1	276	0	4	12.0000
LBBK	chr16:48399219-48399570(-)$1	351	9	13	12.0000
EEEK	chr17:48545634-48545886(+)$1	252	37	41	12.0000
B{CC	chr17:29632112-29632463(+)$1	351	13	17	12.0000
cxxx	chr2:201728764-201729006(-)$1	242	179	183	12.0000
eee[	chr1:247094471-247094745(-)$1	274	218	222	12.0000
HHH}	chr12:104682486-104682742(+)$1	256	237	241	12.0000
fff4	chr7:923745-924047(+)$1	302	223	227	12.0000
DDKK	chr17:29622328-29622594(+)$1	266	3	7	12.0000
DDDD	chr17:74288406-74288672(-)$1	266	63	67	12.0000
occc	chr1:91967158-91967408(+)$1	250	69	73	12.0000
]ccc	chr17:80788037-80788281(+)$1	244	135	139	12.0000
###c	chr12:50135945-50136257(+)$1	312	221	225	12.0000
gggg	chr3:99567453-99567697(+)$1	244	81	85	12.0000
]ddd	chr2:27998725-27998979(+)$1	254	28	32	12.0000
mmgg	chr19:56188480-56188734(+)$1	254	44	48	12.0000
FF::	chr17:80789358-80789625(+)$1	267	46	50	12.0000
qqqq	chr17:44626328-44626584(-)$1	256	50	54	12.0000
HHH:	chr7:141478453-141478703(+)$1	250	106	110	12.0000
ee[c	chr2:201728806-201729067(-)$1	261	24	28	12.0000
ddd2	chr7:6074953-6075200(-)$1	247	67	71	12.0000
eee#	chr3:49756505-49756844(+)$1	339	136	140	12.0000
KHHH	chr9:139115446-139115710(-)$1	264	92	96	12.0000
eeee	chr21:46281466-46281750(-)$1	284	123	127	12.0000
hhhh	chr8:94752668-94752932(-)$1	264	210	214	12.0000

#DB
.)))	chr3:99567523-99567841(+)$1	1	11	15	12.0000
))))	chr17:74287802-74288027(-)$1	1	116	120	12.0000
(((.	chr14:39736596-39736838(+)$1	1	68	72	12.0000
((..	chr17:29632050-29632282(+)$1	1	75	79	12.0000
((((	chr3:99549300-99549541(+)$1	1	73	77	12.0000
((((	chr17:74288472-74288769(-)$1	1	160	164	12.0000
.)))	chr20:30947465-30947735(+)$1	1	146	150	12.0000
))))	chr17:74288346-74288606(-)$1	1	120	124	12.0000
.((.	chr14:24002712-24003013(+)$1	1	62	66	12.0000
((..	chr8:41814685-41814932(-)$1	1	7	11	12.0000
...)	chr17:29622109-29622374(+)$1	1	167	171	12.0000
.(((	chr1:1689671-1689937(-)$1	1	8	12	12.0000
((..	chr3:99567708-99567970(+)$1	1	45	49	12.0000
...)	chr1:1689858-1690096(-)$1	1	158	162	12.0000
((((	chr12:121125100-121125338(+)$1	1	163	167	12.0000
((..	chr20:30947420-30947665(+)$1	1	31	35	12.0000
))))	chr8:94752559-94752810(-)$1	1	88	92	12.0000
((..	chr17:80788967-80789215(+)$1	1	45	49	12.0000
.(((	chr17:74288881-74289131(-)$1	1	132	136	12.0000
.(((	chr17:74288818-74289081(-)$1	1	82	86	12.0000
(((.	chr11:9286484-9286849(-)$1	1	303	307	12.0000
.(((	chr17:74288684-74288958(-)$1	1	19	23	12.0000
))))	chr19:59073599-59073870(+)$1	1	20	24	12.0000
))).	chr17:29622740-29622984(+)$1	1	57	61	12.0000
))..	chr2:231902561-231902869(+)$1	1	206	210	12.0000
).))	chr7:127669051-127669306(+)$1	1	201	205	12.0000
))))	chr11:940786-941056(+)$1	1	226	230	12.0000
))))	chr2:201728724-201728964(-)$1	1	137	141	12.0000
.(((	chr3:99567350-99567592(+)$1	1	184	188	12.0000
..))	chr2:240921484-240921741(-)$1	1	177	181	12.0000
.(((	chr12:27132598-27132880(-)$1	1	36	40	12.0000
))))	chr8:94752610-94752863(-)$1	1	141	145	12.0000
.(..	chr17:74288931-74289173(-)$1	1	29	33	12.0000
....	chr12:50898802-50899051(+)$1	1	137	141	12.0000
))))	chr17:74288569-74288819(-)$1	1	210	214	12.0000
))))	chr17:76723594-76723859(-)$1	1	125	129	12.0000
((((	chr17:74288199-74288433(-)$1	1	97	101	12.0000
((((	chr17:74288258-74288504(-)$1	1	18	22	12.0000
..))	chr17:80789584-80789875(+)$1	1	89	93	12.0000
.(((	chr2:97482368-97482640(+)$1	1	7	11	12.0000
.(((	chr17:29622546-29622792(+)$1	1	44	48	12.0000
((((	chr3:99569568-99569897(+)$1	1	169	173	12.0000
.(((	chr7:6075000-6075263(-)$1	1	130	134	12.0000
...(	chr19:57986964-57987250(-)$1	1	69	73	12.0000
)(((	chr3:99567146-99567389(+)$1	1	185	189	12.0000
((((	chr19:59073422-59073737(+)$1	1	11	15	12.0000
))))	chr17:74288036-74288310(-)$1	1	94	98	12.0000
((((	chr6:159047623-159047857(+)$1	1	28	32	12.0000
))))	chr7:104752861-104753089(-)$1	1	68	72	12.0000
((((	chr2:11721003-11721259(+)$1	1	54	58	12.0000
((((	chr17:74287954-74288216(-)$1	1	0	4	12.0000
.(((	chr17:80788856-80789150(+)$1	1	9	13	12.0000
.(((	chr3:185538711-185538987(-)$1	1	0	4	12.0000
.((.	chr16:48399219-48399570(-)$1	1	9	13	12.0000
(((.	chr17:48545634-48545886(+)$1	1	37	41	12.0000
(.((	chr17:29632112-29632463(+)$1	1	13	17	12.0000
(...	chr2:201728764-201729006(-)$1	1	179	183	12.0000
(((.	chr1:247094471-247094745(-)$1	1	218	222	12.0000
))).	chr12:104682486-104682742(+)$1	1	237	241	12.0000
))).	chr7:923745-924047(+)$1	1	223	227	12.0000
((..	chr17:29622328-29622594(+)$1	1	3	7	12.0000
((((	chr17:74288406-74288672(-)$1	1	63	67	12.0000
.)))	chr1:91967158-91967408(+)$1	1	69	73	12.0000
.)))	chr17:80788037-80788281(+)$1	1	135	139	12.0000
...(	chr12:50135945-50136257(+)$1	1	221	225	12.0000
((((	chr3:99567453-99567697(+)$1	1	81	85	12.0000
.)))	chr2:27998725-27998979(+)$1	1	28	32	12.0000
..))	chr19:56188480-56188734(+)$1	1	44	48	12.0000
((..	chr17:80789358-80789625(+)$1	1	46	50	12.0000
....	chr17:44626328-44626584(-)$1	1	50	54	12.0000
(((.	chr7:141478453-141478703(+)$1	1	106	110	12.0000
((.(	chr2:201728806-201729067(-)$1	1	24	28	12.0000
))).	chr7:6074953-6075200(-)$1	1	67	71	12.0000
(((.	chr3:49756505-49756844(+)$1	1	136	140	12.0000
.(((	chr9:139115446-139115710(-)$1	1	92	96	12.0000
))))	chr21:46281466-46281750(-)$1	1	123	127	12.0000
))))	chr8:94752668-94752932(-)$1	1	210	214	12.0000

#PSSM
U : 0.92	u : 0.07	
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	
A : 0.92	a : 0.07	

#score	924.0000000000001
#seq	77
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_CDS_m1_run1.nuc.txt

#NT
CCCAGCUC	chr16:31501591-31501871(-)$1	280	86	94	14.6818
cccauccc	chrX:53263356-53263619(-)$1	263	39	47	15.2499
CCCAGCCG	chr11:770243-770510(-)$1	267	56	64	15.3636
CCCACCCC	chr11:66392950-66393214(+)$1	264	142	150	15.2499
CCCAGCCU	chr19:6413633-6413849(-)$1	216	95	103	15.7045
CACAGCCC	chr19:47778235-47778490(+)$1	255	140	148	15.9318
CCAAGCCC	chr19:6413391-6413709(-)$1	318	144	152	15.3636
CCCUGCCC	chr9:136208243-136208520(-)$1	277	117	125	15.0227
ACCAGCCC	chr17:47126691-47126970(+)$1	279	114	122	15.9318
ACCAGCCC	chr17:73841813-73842170(-)$1	357	163	171	15.9318
cccAGGCC	chr19:1584474-1584752(-)$1	278	43	51	14.9090
cccggccc	chr21:46359946-46360180(+)$1	234	95	103	15.1363
CCCAGCCC	chr9:140352013-140352266(-)$1	253	113	121	19.4545
CCCAGCCU	chr16:1496204-1496491(-)$1	287	81	89	15.7045
CCCAGCCA	chr17:74078562-74078802(-)$1	240	12	20	15.4772
CACAGCCC	chr19:47778290-47778560(+)$1	270	85	93	15.9318
CCCAGCCC	chr12:120534542-120534845(-)$1	303	182	190	19.4545
CCCACCCC	chr17:73314715-73314966(-)$1	251	209	217	15.2499
CACAGCCC	chr17:76117555-76117812(-)$1	257	47	55	15.9318
CACAGCCC	chr19:7535080-7535366(+)$1	286	4	12	15.9318
CCAAGCCC	chr16:2550236-2550531(+)$1	295	87	95	15.3636
CCCAGCCU	chr9:130269177-130269414(-)$1	237	94	102	15.7045
CGCAGCCC	chr19:1585019-1585292(-)$1	273	74	82	15.5909
CCCAGCCC	chr12:120534784-120535015(-)$1	231	8	16	19.4545
GCCAGCCC	chr1:33237159-33237407(+)$1	248	12	20	15.8181
cccggccc	chrX:152953802-152954150(+)$1	348	90	98	15.1363
CCCCGCCC	chr12:120534715-120534967(-)$1	252	70	78	15.0227
CCCAGCCC	chr17:79890698-79890962(-)$1	264	54	62	19.4545
CCAAGCCC	chr1:11849279-11849525(-)$1	246	53	61	15.3636
CCCAUCCC	chr11:64894264-64894588(+)$1	324	137	145	15.2499
UCCAGCCC	chr17:79826162-79826493(-)$1	331	186	194	15.7045
ACCAGCCC	chr19:47774552-47774824(+)$1	272	121	129	15.9318
CCCAACCC	chr19:51301519-51301788(-)$1	269	184	192	15.1363
CCAAGCCC	chr1:11849358-11849599(-)$1	241	127	135	15.3636
CCCAGGCC	chr1:6694614-6694879(-)$1	265	7	15	14.9090
UCCAGCCC	chr19:8468333-8468646(+)$1	313	206	214	15.7045
CUCAGCCC	chr17:79826389-79826628(-)$1	239	46	54	15.4772
CACAGCCC	chr19:47778360-47778637(+)$1	277	15	23	15.9318
cccagccA	chr4:2939873-2940167(-)$1	294	185	193	15.4772
gccagccc	chr17:46620728-46621034(-)$1	306	221	229	15.8181
ACCAGCCC	chr1:156219556-156219820(-)$1	264	200	208	15.9318
CGCAGCCC	chr19:1581102-1581368(-)$1	266	232	240	15.5909
GCCAGCCC	chr21:46396551-46396835(+)$1	284	95	103	15.8181

#otherMatches

#Struct PSSM
:BB{FFFF	chr17:79826314-79826562(-)$1	248	3	11	15.7045
ellleeee	chr16:31501591-31501871(-)$1	280	86	94	14.6818
::::::::	chrX:53263356-53263619(-)$1	263	39	47	15.2499
a!!ggggg	chr11:770243-770510(-)$1	267	56	64	15.3636
vvvvvvvd	chr11:66392950-66393214(+)$1	264	142	150	15.2499
::cccnnn	chr19:6413633-6413849(-)$1	216	95	103	15.7045
???DDDD}	chr19:47778235-47778490(+)$1	255	140	148	15.9318
e333ccc3	chr19:6413391-6413709(-)$1	318	144	152	15.3636
lleeeee:	chr9:136208243-136208520(-)$1	277	117	125	15.0227
]bb]ccc3	chr17:47126691-47126970(+)$1	279	114	122	15.9318
bdddd$$$	chr17:73841813-73842170(-)$1	357	163	171	15.9318
5555dddd	chr19:1584474-1584752(-)$1	278	43	51	14.9090
=======!	chr21:46359946-46360180(+)$1	234	95	103	15.1363
dddd::::	chr9:140352013-140352266(-)$1	253	113	121	19.4545
b[dddd%%	chr16:1496204-1496491(-)$1	287	81	89	15.7045
ddddmmmm	chr17:74078562-74078802(-)$1	240	12	20	15.4772
nnnnccc2	chr19:47778290-47778560(+)$1	270	85	93	15.9318
::CCCBBZ	chr12:120534542-120534845(-)$1	303	182	190	19.4545
ccc"""cc	chr17:73314715-73314966(-)$1	251	209	217	15.2499
eeeegggg	chr17:76117555-76117812(-)$1	257	47	55	15.9318
ellleeee	chr19:7535080-7535366(+)$1	286	4	12	15.9318
nnnccca6	chr16:2550236-2550531(+)$1	295	87	95	15.3636
hhhhhh::	chr9:130269177-130269414(-)$1	237	94	102	15.7045
fffffeee	chr19:1585019-1585292(-)$1	273	74	82	15.5909
####cccl	chr12:120534784-120535015(-)$1	231	8	16	19.4545
b!!dddd[	chr1:33237159-33237407(+)$1	248	12	20	15.8181
:::dddd[	chrX:152953802-152954150(+)$1	348	90	98	15.1363
::::bb[c	chr12:120534715-120534967(-)$1	252	70	78	15.0227
:ccc[ccc	chr17:79890698-79890962(-)$1	264	54	62	19.4545
eeeeeee[	chr1:11849279-11849525(-)$1	246	53	61	15.3636
a22eeeee	chr11:64894264-64894588(+)$1	324	137	145	15.2499
$$ddddll	chr17:79826162-79826493(-)$1	331	186	194	15.7045
ooooobba	chr19:47774552-47774824(+)$1	272	121	129	15.9318
ccc:::::	chr19:51301519-51301788(-)$1	269	184	192	15.1363
ccc[eeee	chr1:11849358-11849599(-)$1	241	127	135	15.3636
c[a[cccl	chr1:6694614-6694879(-)$1	265	7	15	14.9090
!!ccc!!c	chr19:8468333-8468646(+)$1	313	206	214	15.7045
GG{DDDDi	chr17:79826389-79826628(-)$1	239	46	54	15.4772
d"""bb[h	chr19:47778360-47778637(+)$1	277	15	23	15.9318
:FFFFFFg	chr4:2939873-2940167(-)$1	294	185	193	15.4772
cc333ggg	chr17:46620728-46621034(-)$1	306	221	229	15.8181
baddddbb	chr1:156219556-156219820(-)$1	264	200	208	15.9318
]bb]ccc3	chr19:1581102-1581368(-)$1	266	232	240	15.5909
BB}GGGGG	chr21:46396551-46396835(+)$1	284	95	103	15.8181

#DB
.((.((((	chr17:79826314-79826562(-)$1	1	3	11	15.7045
(...))))	chr16:31501591-31501871(-)$1	1	86	94	14.6818
........	chrX:53263356-53263619(-)$1	1	39	47	15.2499
(..(((((	chr11:770243-770510(-)$1	1	56	64	15.3636
.......)	chr11:66392950-66393214(+)$1	1	142	150	15.2499
..(((...	chr19:6413633-6413849(-)$1	1	95	103	15.7045
...)))).	chr19:47778235-47778490(+)$1	1	140	148	15.9318
)...))).	chr19:6413391-6413709(-)$1	1	144	152	15.3636
..))))).	chr9:136208243-136208520(-)$1	1	117	125	15.0227
.)).))).	chr17:47126691-47126970(+)$1	1	114	122	15.9318
(((((...	chr17:73841813-73842170(-)$1	1	163	171	15.9318
....))))	chr19:1584474-1584752(-)$1	1	43	51	14.9090
(((((((.	chr21:46359946-46360180(+)$1	1	95	103	15.1363
))))....	chr9:140352013-140352266(-)$1	1	113	121	19.4545
(.((((..	chr16:1496204-1496491(-)$1	1	81	89	15.7045
((((....	chr17:74078562-74078802(-)$1	1	12	20	15.4772
....))).	chr19:47778290-47778560(+)$1	1	85	93	15.9318
..))))).	chr12:120534542-120534845(-)$1	1	182	190	19.4545
(((...((	chr17:73314715-73314966(-)$1	1	209	217	15.2499
((((((((	chr17:76117555-76117812(-)$1	1	47	55	15.9318
(...))))	chr19:7535080-7535366(+)$1	1	4	12	15.9318
...)))).	chr16:2550236-2550531(+)$1	1	87	95	15.3636
))))))..	chr9:130269177-130269414(-)$1	1	94	102	15.7045
))))))))	chr19:1585019-1585292(-)$1	1	74	82	15.5909
....(((.	chr12:120534784-120535015(-)$1	1	8	16	19.4545
(..((((.	chr1:33237159-33237407(+)$1	1	12	20	15.8181
...((((.	chrX:152953802-152954150(+)$1	1	90	98	15.1363
....((.(	chr12:120534715-120534967(-)$1	1	70	78	15.0227
.(((.(((	chr17:79890698-79890962(-)$1	1	54	62	19.4545
(((((((.	chr1:11849279-11849525(-)$1	1	53	61	15.3636
)..)))))	chr11:64894264-64894588(+)$1	1	137	145	15.2499
..((((..	chr17:79826162-79826493(-)$1	1	186	194	15.7045
.....)))	chr19:47774552-47774824(+)$1	1	121	129	15.9318
))).....	chr19:51301519-51301788(-)$1	1	184	192	15.1363
(((.((((	chr1:11849358-11849599(-)$1	1	127	135	15.3636
(.(.(((.	chr1:6694614-6694879(-)$1	1	7	15	14.9090
..(((..(	chr19:8468333-8468646(+)$1	1	206	214	15.7045
((.(((((	chr17:79826389-79826628(-)$1	1	46	54	15.4772
(...((.(	chr19:47778360-47778637(+)$1	1	15	23	15.9318
.))))))(	chr4:2939873-2940167(-)$1	1	185	193	15.4772
))...)))	chr17:46620728-46621034(-)$1	1	221	229	15.8181
((((((((	chr1:156219556-156219820(-)$1	1	200	208	15.9318
.)).))).	chr19:1581102-1581368(-)$1	1	232	240	15.5909
)).)))))	chr21:46396551-46396835(+)$1	1	95	103	15.8181

#PSSM
C : 0.68	c : 0.11	A : 0.09	G : 0.04	U : 0.04	g : 0.02	
C : 0.68	c : 0.13	A : 0.11	G : 0.04	U : 0.02	
C : 0.77	c : 0.13	A : 0.09	
A : 0.84	a : 0.06	g : 0.04	U : 0.02	C : 0.02	
G : 0.79	g : 0.09	C : 0.04	u : 0.02	U : 0.02	A : 0.02	
C : 0.84	c : 0.11	G : 0.04	
C : 0.86	c : 0.11	U : 0.02	
C : 0.74	U : 0.09	c : 0.09	A : 0.04	G : 0.02	

#score	698.272727272727
#seq	44
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_UTR_m2_run1.nuc.txt

#NT
cacacagcacac	chr11:2152605-2152807(-)$1	202	12	24	34.7209
cacacagcacac	chr11:2152718-2152924(-)$1	206	20	32	34.7209
cacacagcacac	chr11:2153241-2153446(-)$1	205	123	135	34.7209
cacacagcacac	chr11:2152766-2152976(-)$1	210	38	50	34.7209
CUCACAGcacac	chr11:2152557-2152762(-)$1	205	29	41	30.3023
cacacagcacac	chr11:2153258-2153466(-)$1	208	143	155	34.7209
cacgcagcacac	chr11:2152524-2152728(-)$1	204	10	22	30.3023
cacacagcacac	chr11:2152592-2152796(-)$1	204	1	13	34.7209
CUCACAGcacac	chr11:2152530-2152733(-)$1	203	0	12	30.3023
cacacagcacac	chr11:2152793-2152999(-)$1	206	18	30	34.7209
cacacagcacac	chr11:2152638-2152844(-)$1	206	49	61	34.7209
cacacagcacac	chr11:2153101-2153307(-)$1	206	46	58	34.7209
CACACUGCACAU	chr21:46915542-46915875(+)$1	333	301	313	25.3023
cacacagcacac	chr11:2152671-2152876(-)$1	205	11	23	34.7209
cacacagcacac	chr11:2152987-2153193(-)$1	206	43	55	34.7209
cacacagcacac	chr11:2152629-2152834(-)$1	205	39	51	34.7209
cacacaucacac	chr19:6663121-6663446(-)$1	325	121	133	29.9534
cacacagcacac	chr11:2153093-2153298(-)$1	205	37	49	34.7209
cacacagcacac	chr11:2152703-2152905(-)$1	202	1	13	34.7209
cacacagcacac	chr11:2152729-2152933(-)$1	204	29	41	34.7209
CCCCCAGCACAC	chr20:33891353-33891605(-)$1	252	120	132	25.6511
cacacagcacac	chr11:2153293-2153513(-)$1	220	190	202	34.7209
cacacagcacac	chr11:2152612-2152816(-)$1	204	21	33	34.7209
cacacagcacac	chr11:2152576-2152782(-)$1	206	6	18	34.7209
cacacagcacac	chr11:2152741-2152948(-)$1	207	10	22	34.7209
cacgcagcacac	chr11:2152521-2152724(-)$1	203	6	18	30.3023
cacacagcacac	chr11:2152733-2152937(-)$1	204	33	45	34.7209
cacacagcacac	chr11:2153164-2153369(-)$1	205	46	58	34.7209
cacacagcacac	chr11:2152756-2152960(-)$1	204	22	34	34.7209
cacacagcacac	chr11:2153272-2153479(-)$1	207	156	168	34.7209
cacacagcacac	chr11:2153236-2153438(-)$1	202	115	127	34.7209
cacacagcacac	chr11:2153015-2153220(-)$1	205	26	38	34.7209
cacacagcacac	chr11:2153208-2153416(-)$1	208	93	105	34.7209
cacacagcacac	chr11:2152607-2152809(-)$1	202	14	26	34.7209
GACACAGCACAG	chr11:618785-619007(-)$1	222	60	72	25.3023
cacacagcacac	chr11:2152652-2152857(-)$1	205	11	23	34.7209
cacacagcacac	chr11:2152571-2152776(-)$1	205	0	12	34.7209
cacacagcacac	chr11:2152831-2153040(-)$1	209	2	14	34.7209
cacacagcacac	chr11:2152596-2152802(-)$1	206	7	19	34.7209
cacacagcacac	chr11:2152824-2153031(-)$1	207	12	24	34.7209
cacacagcacac	chr11:2153060-2153273(-)$1	213	12	24	34.7209
cacacagcacac	chr11:2152609-2152812(-)$1	203	17	29	34.7209

#otherMatches

#Struct PSSM
zzzzzccc::::	chr11:2153192-2153400(-)$1	208	77	89	34.7209
::::::BBOOOO	chr11:2152605-2152807(-)$1	202	12	24	34.7209
c:::::bbmmmm	chr11:2152718-2152924(-)$1	206	20	32	34.7209
zzzzzccc::::	chr11:2153241-2153446(-)$1	205	123	135	34.7209
ppppppbb::::	chr11:2152766-2152976(-)$1	210	38	50	34.7209
cclllccc::::	chr11:2152557-2152762(-)$1	205	29	41	30.3023
^^^^^^bb4444	chr11:2153258-2153466(-)$1	208	143	155	34.7209
DD:eeeeeoooo	chr11:2152524-2152728(-)$1	204	10	22	30.3023
::::::cccooo	chr11:2152592-2152796(-)$1	204	1	13	34.7209
:::DDDD:::::	chr11:2152530-2152733(-)$1	203	0	12	30.3023
::::::::::::	chr11:2152793-2152999(-)$1	206	18	30	34.7209
::::::cccooo	chr11:2152638-2152844(-)$1	206	49	61	34.7209
ppppppbb::::	chr11:2153101-2153307(-)$1	206	46	58	34.7209
gggg:DDDDYYF	chr21:46915542-46915875(+)$1	333	301	313	25.3023
bnnnnnbb::::	chr11:2152671-2152876(-)$1	205	11	23	34.7209
::::::bbuuuu	chr11:2152987-2153193(-)$1	206	43	55	34.7209
::::::cccooo	chr11:2152629-2152834(-)$1	205	39	51	34.7209
::::::::::::	chr19:6663121-6663446(-)$1	325	121	133	29.9534
ppppppbb::::	chr11:2153093-2153298(-)$1	205	37	49	34.7209
BMMMMCCC::::	chr11:2152703-2152905(-)$1	202	1	13	34.7209
c:::::bbmmmm	chr11:2152729-2152933(-)$1	204	29	41	34.7209
}HHHHHHHHBB}	chr20:33891353-33891605(-)$1	252	120	132	25.6511
::::::bbmmmm	chr11:2153293-2153513(-)$1	220	190	202	34.7209
::::::cccooo	chr11:2152612-2152816(-)$1	204	21	33	34.7209
ppppppccc:::	chr11:2152576-2152782(-)$1	206	6	18	34.7209
ppppppbb::::	chr11:2152741-2152948(-)$1	207	10	22	34.7209
DD:eeeeeoooo	chr11:2152521-2152724(-)$1	203	6	18	30.3023
c:::::bbmmmm	chr11:2152733-2152937(-)$1	204	33	45	34.7209
zzzzzccc::::	chr11:2153164-2153369(-)$1	205	46	58	34.7209
ppppppbb::::	chr11:2152756-2152960(-)$1	204	22	34	34.7209
zzzzzccc::::	chr11:2153272-2153479(-)$1	207	156	168	34.7209
zzzzzccc::::	chr11:2153236-2153438(-)$1	202	115	127	34.7209
::::::bbqqqq	chr11:2153015-2153220(-)$1	205	26	38	34.7209
zzzzzccc::::	chr11:2153208-2153416(-)$1	208	93	105	34.7209
::::::BBOOOO	chr11:2152607-2152809(-)$1	202	14	26	34.7209
::::::bb!!cc	chr11:618785-619007(-)$1	222	60	72	25.3023
ppppppccc:::	chr11:2152652-2152857(-)$1	205	11	23	34.7209
:::::CCC::::	chr11:2152571-2152776(-)$1	205	0	12	34.7209
::::::BB::::	chr11:2152831-2153040(-)$1	209	2	14	34.7209
:::DDDD:::::	chr11:2152596-2152802(-)$1	206	7	19	34.7209
bnnnnnbb::::	chr11:2152824-2153031(-)$1	207	12	24	34.7209
ppppppbb::::	chr11:2153060-2153273(-)$1	213	12	24	34.7209
::::::BBOOOO	chr11:2152609-2152812(-)$1	203	17	29	34.7209

#DB
.....)))....	chr11:2153192-2153400(-)$1	1	77	89	34.7209
......((....	chr11:2152605-2152807(-)$1	1	12	24	34.7209
).....((....	chr11:2152718-2152924(-)$1	1	20	32	34.7209
.....)))....	chr11:2153241-2153446(-)$1	1	123	135	34.7209
......))....	chr11:2152766-2152976(-)$1	1	38	50	34.7209
((...)))....	chr11:2152557-2152762(-)$1	1	29	41	30.3023
......))....	chr11:2153258-2153466(-)$1	1	143	155	34.7209
((.(((((....	chr11:2152524-2152728(-)$1	1	10	22	30.3023
......(((...	chr11:2152592-2152796(-)$1	1	1	13	34.7209
...((((.....	chr11:2152530-2152733(-)$1	1	0	12	30.3023
............	chr11:2152793-2152999(-)$1	1	18	30	34.7209
......(((...	chr11:2152638-2152844(-)$1	1	49	61	34.7209
......))....	chr11:2153101-2153307(-)$1	1	46	58	34.7209
)))).))))..)	chr21:46915542-46915875(+)$1	1	301	313	25.3023
(.....))....	chr11:2152671-2152876(-)$1	1	11	23	34.7209
......((....	chr11:2152987-2153193(-)$1	1	43	55	34.7209
......(((...	chr11:2152629-2152834(-)$1	1	39	51	34.7209
............	chr19:6663121-6663446(-)$1	1	121	133	29.9534
......))....	chr11:2153093-2153298(-)$1	1	37	49	34.7209
(....(((....	chr11:2152703-2152905(-)$1	1	1	13	34.7209
).....((....	chr11:2152729-2152933(-)$1	1	29	41	34.7209
.)))))))))).	chr20:33891353-33891605(-)$1	1	120	132	25.6511
......((....	chr11:2153293-2153513(-)$1	1	190	202	34.7209
......(((...	chr11:2152612-2152816(-)$1	1	21	33	34.7209
......)))...	chr11:2152576-2152782(-)$1	1	6	18	34.7209
......))....	chr11:2152741-2152948(-)$1	1	10	22	34.7209
((.(((((....	chr11:2152521-2152724(-)$1	1	6	18	30.3023
).....((....	chr11:2152733-2152937(-)$1	1	33	45	34.7209
.....)))....	chr11:2153164-2153369(-)$1	1	46	58	34.7209
......))....	chr11:2152756-2152960(-)$1	1	22	34	34.7209
.....)))....	chr11:2153272-2153479(-)$1	1	156	168	34.7209
.....)))....	chr11:2153236-2153438(-)$1	1	115	127	34.7209
......((....	chr11:2153015-2153220(-)$1	1	26	38	34.7209
.....)))....	chr11:2153208-2153416(-)$1	1	93	105	34.7209
......((....	chr11:2152607-2152809(-)$1	1	14	26	34.7209
......((..((	chr11:618785-619007(-)$1	1	60	72	25.3023
......)))...	chr11:2152652-2152857(-)$1	1	11	23	34.7209
.....(((....	chr11:2152571-2152776(-)$1	1	0	12	34.7209
......((....	chr11:2152831-2153040(-)$1	1	2	14	34.7209
...((((.....	chr11:2152596-2152802(-)$1	1	7	19	34.7209
(.....))....	chr11:2152824-2153031(-)$1	1	12	24	34.7209
......))....	chr11:2153060-2153273(-)$1	1	12	24	34.7209
......((....	chr11:2152609-2152812(-)$1	1	17	29	34.7209

#PSSM
c : 0.88	C : 0.09	G : 0.02	
a : 0.88	U : 0.04	A : 0.04	C : 0.02	
c : 0.88	C : 0.11	
a : 0.83	A : 0.09	g : 0.04	C : 0.02	
c : 0.88	C : 0.11	
a : 0.88	A : 0.09	U : 0.02	
g : 0.86	G : 0.11	u : 0.02	
c : 0.93	C : 0.06	
a : 0.93	A : 0.06	
c : 0.93	C : 0.06	
a : 0.93	A : 0.06	
c : 0.93	U : 0.02	C : 0.02	G : 0.02	

#score	1442.6511627906991
#seq	43
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_UTR_m3_run2.nuc.txt

#NT
GAGGCCGCGGC	chr16:83841505-83841826(+)$1	321	244	255	17.9038
GCGGCGGCGGC	chr16:67906961-67907245(+)$1	284	151	162	26.4615
gcggggccggc	chr19:15442612-15442861(-)$1	249	78	89	19.0576
GCGGAGCCGGC	chr22:20748560-20748844(+)$1	284	152	163	18.8653
GCCGCGGCGGC	chr1:155658783-155659046(+)$1	263	44	55	22.8076
GCGAGGGCGGC	chr12:109124489-109124755(-)$1	266	94	105	18.6730
GCCGCGGCAGC	chr7:5632350-5632686(+)$1	336	123	134	18.9615
gcggcggcggc	chr9:100818949-100819245(+)$1	296	80	91	26.4615
GAGGCGCCGGC	chr15:44084436-44084681(+)$1	245	206	217	17.9038
GCGGGGCCGGC	chr17:76182929-76183198(-)$1	269	3	14	19.0576
guggcggcCGC	chr20:57582066-57582331(-)$1	265	168	179	17.9038
GCGGCGGUGGC	chr15:34393760-34394115(-)$1	355	8	19	22.7115
GCGGCGGCAGG	chr6:3157563-3157837(-)$1	274	51	62	18.1923
GCGGCGGCCGC	chr19:1104628-1104901(+)$1	273	167	178	22.5192
GCUGCGGCGGA	chr5:68462914-68463207(+)$1	293	67	78	18.2884
GCUACGGCGGC	chr8:11725417-11725690(-)$1	273	86	97	18.3846
gcggccgcggg	chrX:129244314-129244569(-)$1	255	58	69	17.9999
GCGGCGGAGCC	chr17:42401979-42402223(-)$1	244	77	88	18.3846
GCGGCGGCGGC	chr22:32340570-32340859(+)$1	289	49	60	26.4615
GCGGCUGCUGC	chr19:39109744-39110034(+)$1	290	2	13	18.1923
gcggcggcggc	chr9:101867382-101867635(+)$1	253	156	167	26.4615
GCCGCGGAGGC	chr15:66084361-66084613(-)$1	252	9	20	19.4423
GCUACGGCGGC	chr6:166755861-166756140(-)$1	279	30	41	18.3846
gccgcggcggc	chr11:46403153-46403407(+)$1	254	89	100	22.8076
GCGGCGGCGGC	chr12:56498392-56498662(+)$1	270	81	92	26.4615
gcggcggcggc	chr6:149638937-149639220(+)$1	283	93	104	26.4615
GCGGCGGCGGC	chr15:66679243-66679516(+)$1	273	47	58	26.4615
GCUGGGGAGGC	chr9:139249218-139249502(+)$1	284	157	168	16.0769
GCGGCGGCGGC	chr5:177631461-177631706(+)$1	245	125	136	26.4615
GCAGCGGGGGC	chr8:102217326-102217680(-)$1	354	25	36	18.9615
GCGGCAGCGGC	chrX:47053259-47053522(+)$1	263	41	52	22.7115
GCGGUGGCGGC	chr6:29595636-29595881(-)$1	245	113	124	22.6153
gcggcggcggC	chr11:95522561-95522845(-)$1	284	126	137	26.4615
ACGGCGGCGGC	chr5:126112813-126113060(+)$1	247	57	68	21.8461
GCGGCAGCGGC	chr15:70389811-70390135(-)$1	324	151	162	22.7115
gcagcggcggc	chr6:37137897-37138135(+)$1	238	105	116	22.6153
GCGGCGGCCGC	chr22:38902153-38902411(-)$1	258	86	97	22.5192
gcggcagcggc	chr5:137688338-137688674(+)$1	336	236	247	22.7115
GCGGCGACAGC	chr16:85646596-85646866(+)$1	270	231	242	18.3846
GCGGCAGGGGC	chr22:41487700-41487993(+)$1	293	218	229	19.0576
GCGGAAGCGGC	chr12:110719311-110719576(+)$1	265	142	153	19.1538
GCGGAGGGGGC	chr20:57467358-57467608(+)$1	250	105	116	19.2500
GCGGCGGCGGC	chr5:177631506-177631780(+)$1	274	80	91	26.4615
gcgggggcggc	chr2:10588146-10588380(-)$1	234	41	52	23.0961
gcggcggcggc	chr2:62932874-62933162(+)$1	288	226	237	26.4615
GCGGAGGAGGC	chr6:146135599-146135941(-)$1	342	83	94	19.5384
GCGGCGGAGGU	chr5:138629680-138629994(+)$1	314	28	39	18.5769
gcggcggcggc	chr16:30087265-30087511(+)$1	246	65	76	26.4615
GCGGCGAUGGC	chr14:23398399-23398657(-)$1	258	90	101	18.4807
GCGGCGGAGAC	chr2:131850811-131851059(-)$1	248	130	141	18.3846
GCGGGGGCGGC	chr12:125398693-125399037(-)$1	344	273	284	23.0961

#otherMatches

#Struct PSSM
:bbbb[dddd"	chr2:114647756-114647997(+)$1	241	66	77	17.9999
IIIIIIIIIBB	chr16:83841505-83841826(+)$1	321	244	255	17.9038
dd[ccc[bboo	chr16:67906961-67907245(+)$1	284	151	162	26.4615
[a[ggggggg[	chr19:15442612-15442861(-)$1	249	78	89	19.0576
mmmbbccc]bb	chr22:20748560-20748844(+)$1	284	152	163	18.8653
fffff22ffff	chr1:155658783-155659046(+)$1	263	44	55	22.8076
cc4444bb22f	chr12:109124489-109124755(-)$1	266	94	105	18.6730
dbbeeeee[cc	chr7:5632350-5632686(+)$1	336	123	134	18.9615
hhhhhhhh!!c	chr9:100818949-100819245(+)$1	296	80	91	26.4615
BBZZZHHHHHH	chr15:44084436-44084681(+)$1	245	206	217	17.9038
fff!!bb[ccc	chr17:76182929-76183198(-)$1	269	3	14	19.0576
eeeeegggggg	chr20:57582066-57582331(-)$1	265	168	179	17.9038
mmmmbb]dddd	chr15:34393760-34394115(-)$1	355	8	19	22.7115
dd[ccc[cccm	chr6:3157563-3157837(-)$1	274	51	62	18.1923
]a]ccc]eeee	chr19:1104628-1104901(+)$1	273	167	178	22.5192
cca[hhhhhhh	chr5:68462914-68463207(+)$1	293	67	78	18.2884
bbmmmmbbddd	chr8:11725417-11725690(-)$1	273	86	97	18.3846
ecccbbmmmmb	chrX:129244314-129244569(-)$1	255	58	69	17.9999
ggggg]bbFFF	chr17:42401979-42402223(-)$1	244	77	88	18.3846
CC{HHHHHHHH	chr22:32340570-32340859(+)$1	289	49	60	26.4615
b[ddddqqqqq	chr19:39109744-39110034(+)$1	290	2	13	18.1923
ee]bb]hhhhh	chr9:101867382-101867635(+)$1	253	156	167	26.4615
CC{EEEEENNN	chr15:66084361-66084613(-)$1	252	9	20	19.4423
eeeee[a!!cc	chr6:166755861-166756140(-)$1	279	30	41	18.3846
IIIII{BB:ee	chr11:46403153-46403407(+)$1	254	89	100	22.8076
bb[bb[fffff	chr12:56498392-56498662(+)$1	270	81	92	26.4615
EEKKJJJJJJJ	chr6:149638937-149639220(+)$1	283	93	104	26.4615
gg[cccccc[d	chr15:66679243-66679516(+)$1	273	47	58	26.4615
4cccccc!!dd	chr9:139249218-139249502(+)$1	284	157	168	16.0769
====22bb]cc	chr5:177631461-177631706(+)$1	245	125	136	26.4615
c22bb]hhhhh	chr8:102217326-102217680(-)$1	354	25	36	18.9615
UJJJJJJJJJJ	chrX:47053259-47053522(+)$1	263	41	52	22.7115
B}GGGGGGGCC	chr6:29595636-29595881(-)$1	245	113	124	22.6153
nnccc]bbfff	chr11:95522561-95522845(-)$1	284	126	137	26.4615
]ddddeeeee:	chr5:126112813-126113060(+)$1	247	57	68	21.8461
bb]ccc22eee	chr15:70389811-70390135(-)$1	324	151	162	22.7115
iiiiiidddd[	chr6:37137897-37138135(+)$1	238	105	116	22.6153
dddeeeee[bb	chr22:38902153-38902411(-)$1	258	86	97	22.5192
GGGGG}BB}BB	chr5:137688338-137688674(+)$1	336	236	247	22.7115
gg[a[dddd[a	chr16:85646596-85646866(+)$1	270	231	242	18.3846
DDDDKKCCCdd	chr22:41487700-41487993(+)$1	293	218	229	19.0576
ddddooooood	chr12:110719311-110719576(+)$1	265	142	153	19.1538
{A::::::::=	chr20:57467358-57467608(+)$1	250	105	116	19.2500
{BB{DDDD{CC	chr5:177631506-177631780(+)$1	274	80	91	26.4615
ffgggggggoo	chr2:10588146-10588380(-)$1	234	41	52	23.0961
bb[bb[eeeee	chr2:62932874-62933162(+)$1	288	226	237	26.4615
[bb$$$$$ccc	chr6:146135599-146135941(-)$1	342	83	94	19.5384
GGGGG:::DDD	chr5:138629680-138629994(+)$1	314	28	39	18.5769
bb[bbmmmmbb	chr16:30087265-30087511(+)$1	246	65	76	26.4615
eeeee!!bb[d	chr14:23398399-23398657(-)$1	258	90	101	18.4807
ff[bb"""bb"	chr2:131850811-131851059(-)$1	248	130	141	18.3846
ggmmmmggggg	chr12:125398693-125399037(-)$1	344	273	284	23.0961

#DB
.((((.((((.	chr2:114647756-114647997(+)$1	1	66	77	17.9999
)))))))))))	chr16:83841505-83841826(+)$1	1	244	255	17.9038
((.(((.((..	chr16:67906961-67907245(+)$1	1	151	162	26.4615
.(.(((((((.	chr19:15442612-15442861(-)$1	1	78	89	19.0576
...))))).))	chr22:20748560-20748844(+)$1	1	152	163	18.8653
)))))..))))	chr1:155658783-155659046(+)$1	1	44	55	22.8076
))....))..)	chr12:109124489-109124755(-)$1	1	94	105	18.6730
((((((((.((	chr7:5632350-5632686(+)$1	1	123	134	18.9615
((((((((..(	chr9:100818949-100819245(+)$1	1	80	91	26.4615
))...))))))	chr15:44084436-44084681(+)$1	1	206	217	17.9038
(((..((.(((	chr17:76182929-76183198(-)$1	1	3	14	19.0576
)))))((((((	chr20:57582066-57582331(-)$1	1	168	179	17.9038
....)).))))	chr15:34393760-34394115(-)$1	1	8	19	22.7115
((.(((.(((.	chr6:3157563-3157837(-)$1	1	51	62	18.1923
.).))).))))	chr19:1104628-1104901(+)$1	1	167	178	22.5192
(((.(((((((	chr5:68462914-68463207(+)$1	1	67	78	18.2884
((....)))))	chr8:11725417-11725690(-)$1	1	86	97	18.3846
((((((....)	chrX:129244314-129244569(-)$1	1	58	69	17.9999
))))).))(((	chr17:42401979-42402223(-)$1	1	77	88	18.3846
((.((((((((	chr22:32340570-32340859(+)$1	1	49	60	26.4615
(.((((.....	chr19:39109744-39110034(+)$1	1	2	13	18.1923
)).)).)))))	chr9:101867382-101867635(+)$1	1	156	167	26.4615
((.(((((...	chr15:66084361-66084613(-)$1	1	9	20	19.4423
(((((.(..((	chr6:166755861-166756140(-)$1	1	30	41	18.3846
(((((.((.((	chr11:46403153-46403407(+)$1	1	89	100	22.8076
((.((.(((((	chr12:56498392-56498662(+)$1	1	81	92	26.4615
((..(((((((	chr6:149638937-149639220(+)$1	1	93	104	26.4615
((.((((((.(	chr15:66679243-66679516(+)$1	1	47	58	26.4615
.)))(((..((	chr9:139249218-139249502(+)$1	1	157	168	16.0769
))))..)).))	chr5:177631461-177631706(+)$1	1	125	136	26.4615
)..)).)))))	chr8:102217326-102217680(-)$1	1	25	36	18.9615
.((((((((((	chrX:47053259-47053522(+)$1	1	41	52	22.7115
).)))))))))	chr6:29595636-29595881(-)$1	1	113	124	22.6153
..))).)))))	chr11:95522561-95522845(-)$1	1	126	137	26.4615
.))))))))).	chr5:126112813-126113060(+)$1	1	57	68	21.8461
)).)))..)))	chr15:70389811-70390135(-)$1	1	151	162	22.7115
((((((((((.	chr6:37137897-37138135(+)$1	1	105	116	22.6153
)))(((((.((	chr22:38902153-38902411(-)$1	1	86	97	22.5192
))))).)).))	chr5:137688338-137688674(+)$1	1	236	247	22.7115
((.(.((((.(	chr16:85646596-85646866(+)$1	1	231	242	18.3846
((((..(((((	chr22:41487700-41487993(+)$1	1	218	229	19.0576
((((......)	chr12:110719311-110719576(+)$1	1	142	153	19.1538
.(........(	chr20:57467358-57467608(+)$1	1	105	116	19.2500
.((.((((.((	chr5:177631506-177631780(+)$1	1	80	91	26.4615
(((((((((..	chr2:10588146-10588380(-)$1	1	41	52	23.0961
((.((.(((((	chr2:62932874-62933162(+)$1	1	226	237	26.4615
.((.....(((	chr6:146135599-146135941(-)$1	1	83	94	19.5384
(((((...(((	chr5:138629680-138629994(+)$1	1	28	39	18.5769
((.((....))	chr16:30087265-30087511(+)$1	1	65	76	26.4615
(((((..((.(	chr14:23398399-23398657(-)$1	1	90	101	18.4807
((.((...((.	chr2:131850811-131851059(-)$1	1	130	141	18.3846
((....)))))	chr12:125398693-125399037(-)$1	1	273	284	23.0961

#PSSM
G : 0.71	g : 0.24	A : 0.03	
C : 0.71	c : 0.23	A : 0.03	u : 0.01	
G : 0.59	g : 0.21	U : 0.07	C : 0.05	c : 0.01	A : 0.01	a : 0.01	
G : 0.69	g : 0.24	A : 0.05	
C : 0.57	c : 0.21	A : 0.07	G : 0.07	g : 0.03	U : 0.01	
G : 0.63	g : 0.21	A : 0.07	C : 0.01	c : 0.01	U : 0.01	a : 0.01	
G : 0.65	g : 0.23	C : 0.05	A : 0.03	c : 0.01	
C : 0.53	c : 0.24	A : 0.11	G : 0.05	U : 0.03	
G : 0.61	g : 0.23	A : 0.07	C : 0.05	U : 0.01	
G : 0.73	g : 0.23	C : 0.01	A : 0.01	
C : 0.73	c : 0.19	G : 0.01	A : 0.01	g : 0.01	U : 0.01	

#score	1111.7692307692307
#seq	52
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_transcript_m1_run1.nuc.txt

#NT
CUGGG	chr3:48556535-48556787(-)$1	252	173	178	15.0000
CUGGG	chr19:47113699-47113951(+)$1	252	89	94	15.0000
CUGGG	chr8:143817377-143817622(+)$1	245	2	7	15.0000
CUGGG	chr9:137024075-137024333(+)$1	258	231	236	15.0000
cuggg	chr6:107362868-107363186(+)$1	318	128	133	15.0000
CUGGG	chr13:114873518-114873786(-)$1	268	196	201	15.0000
CUGGG	chr6:38120945-38121245(+)$1	300	51	56	15.0000
CUGGG	chr17:80202225-80202487(-)$1	262	19	24	15.0000
CUGGG	chr22:22276220-22276511(-)$1	291	209	214	15.0000
CUGGG	chr7:73610388-73610685(+)$1	297	68	73	15.0000
cuggg	chrX:54587324-54587598(+)$1	274	71	76	15.0000
CUGGG	chrX:109417973-109418248(+)$1	275	23	28	15.0000
CUGGG	chr19:18978468-18978744(+)$1	276	1	6	15.0000
cuggg	chr11:62506863-62507128(+)$1	265	10	15	15.0000
cuggg	chr10:75008614-75008896(-)$1	282	175	180	15.0000
CUGGG	chr1:154989877-154990164(+)$1	287	25	30	15.0000
CUGGG	chr19:51301646-51301929(-)$1	283	53	58	15.0000
cuggg	chr22:24970543-24970787(+)$1	244	224	229	15.0000
CUGGG	chr16:31501591-31501871(-)$1	280	144	149	15.0000
CUGGG	chr19:7977411-7977644(+)$1	233	189	194	15.0000
CUGGG	chr17:45017674-45017948(+)$1	274	77	82	15.0000
CUGGG	chr21:45945139-45945445(+)$1	306	160	165	15.0000
CUGGG	chr11:118915283-118915555(-)$1	272	162	167	15.0000
CUGGG	chr1:11849358-11849599(-)$1	241	50	55	15.0000
cuggg	chr1:19542493-19542767(-)$1	274	110	115	15.0000
cuggg	chr22:24969106-24969355(+)$1	249	38	43	15.0000
CUGGG	chr1:160968278-160968508(-)$1	230	115	120	15.0000
CUGGG	chr17:79524330-79524569(-)$1	239	2	7	15.0000
CUGGG	chr1:17733622-17733875(-)$1	253	161	166	15.0000
CUGGG	chr19:1582518-1582758(-)$1	240	38	43	15.0000
CUGGG	chr8:143817998-143818311(+)$1	313	85	90	15.0000
CUGGG	chr1:228286414-228286705(+)$1	291	132	137	15.0000
CUGGG	chr19:2429549-2429804(-)$1	255	116	121	15.0000
cuggg	chr16:50139134-50139393(+)$1	259	161	166	15.0000
CUGGG	chr7:935128-935381(+)$1	253	113	118	15.0000
CUGGG	chr22:21976990-21977215(+)$1	225	27	32	15.0000
cuggg	chr12:133297905-133298122(+)$1	217	130	135	15.0000
CUGGG	chr10:75878305-75878554(+)$1	249	121	126	15.0000
cuggg	chr2:47130421-47130676(-)$1	255	228	233	15.0000
CUGGG	chr17:37076454-37076706(+)$1	252	28	33	15.0000
CUGGG	chr9:131910870-131911169(+)$1	299	35	40	15.0000
cuggg	chr15:89739349-89739652(+)$1	303	207	212	15.0000
cuggg	chr14:21928727-21928986(-)$1	259	51	56	15.0000
cuggg	chr1:19542567-19542833(-)$1	266	176	181	15.0000
CUGGG	chr1:156219992-156220257(-)$1	265	43	48	15.0000
CUGGG	chr17:56167314-56167565(+)$1	251	57	62	15.0000
cuggg	chr9:125579299-125579581(-)$1	282	119	124	15.0000
cuggg	chr19:39980934-39981191(+)$1	257	15	20	15.0000
CUGGG	chr19:13206307-13206550(+)$1	243	135	140	15.0000
cuggg	chr1:55530025-55530287(+)$1	262	121	126	15.0000
CUGGG	chr17:37075811-37076069(+)$1	258	123	128	15.0000
CUGGG	chr22:19025234-19025487(-)$1	253	63	68	15.0000
CUGGG	chr19:12811552-12811807(-)$1	255	180	185	15.0000
cuggg	chr9:37503271-37503557(+)$1	286	276	281	15.0000
CUGGG	chr16:4740125-4740391(+)$1	266	25	30	15.0000
CUGGG	chr16:89711145-89711409(-)$1	264	13	18	15.0000
CUGGG	chrX:109417143-109417413(+)$1	270	150	155	15.0000
CUGGG	chr21:45177069-45177322(+)$1	253	151	156	15.0000
CUGGG	chr9:131910686-131910968(+)$1	282	4	9	15.0000
CUGGG	chr19:11033534-11033796(-)$1	262	148	153	15.0000
CUGGG	chr19:47113412-47113718(+)$1	306	228	233	15.0000
cuggg	chr22:29902846-29903150(-)$1	304	80	85	15.0000
CUGGG	chr19:3208332-3208613(+)$1	281	230	235	15.0000
CUGGG	chr22:21801627-21801887(+)$1	260	92	97	15.0000
CUGGG	chr16:30786222-30786488(+)$1	266	58	63	15.0000
cuggg	chr10:75009757-75009991(-)$1	234	87	92	15.0000
CUGGG	chr19:2429604-2429876(-)$1	272	188	193	15.0000
CUGGG	chr11:47491048-47491286(-)$1	238	26	31	15.0000
CUGGG	chr11:66044144-66044379(+)$1	235	20	25	15.0000
cuggg	chr12:98943116-98943357(+)$1	241	89	94	15.0000
CUGGG	chr1:33789864-33790143(-)$1	279	206	211	15.0000
CUGGG	chr22:41642106-41642384(-)$1	278	105	110	15.0000

#otherMatches

#Struct PSSM
::DDD	chr9:131910447-131910712(+)$1	265	49	54	15.0000
eeee[	chr3:48556535-48556787(-)$1	252	173	178	15.0000
^^^^f	chr19:47113699-47113951(+)$1	252	89	94	15.0000
DDKKE	chr8:143817377-143817622(+)$1	245	2	7	15.0000
C}GGG	chr9:137024075-137024333(+)$1	258	231	236	15.0000
oeeee	chr6:107362868-107363186(+)$1	318	128	133	15.0000
=mmmm	chr13:114873518-114873786(-)$1	268	196	201	15.0000
ddd22	chr6:38120945-38121245(+)$1	300	51	56	15.0000
JJJJJ	chr17:80202225-80202487(-)$1	262	19	24	15.0000
iiiii	chr22:22276220-22276511(-)$1	291	209	214	15.0000
hhhhH	chr7:73610388-73610685(+)$1	297	68	73	15.0000
ccbbm	chrX:54587324-54587598(+)$1	274	71	76	15.0000
!!ccc	chrX:109417973-109418248(+)$1	275	23	28	15.0000
HHHHH	chr19:18978468-18978744(+)$1	276	1	6	15.0000
cccnn	chr11:62506863-62507128(+)$1	265	10	15	15.0000
cccnn	chr10:75008614-75008896(-)$1	282	175	180	15.0000
iiiii	chr1:154989877-154990164(+)$1	287	25	30	15.0000
ggggg	chr19:51301646-51301929(-)$1	283	53	58	15.0000
cc[a[	chr22:24970543-24970787(+)$1	244	224	229	15.0000
[ccc$	chr16:31501591-31501871(-)$1	280	144	149	15.0000
FFFFF	chr19:7977411-7977644(+)$1	233	189	194	15.0000
!ffff	chr17:45017674-45017948(+)$1	274	77	82	15.0000
oooee	chr21:45945139-45945445(+)$1	306	160	165	15.0000
''eee	chr11:118915283-118915555(-)$1	272	162	167	15.0000
nneee	chr1:11849358-11849599(-)$1	241	50	55	15.0000
fffff	chr1:19542493-19542767(-)$1	274	110	115	15.0000
e:BB{	chr22:24969106-24969355(+)$1	249	38	43	15.0000
??FFF	chr1:160968278-160968508(-)$1	230	115	120	15.0000
JJJJJ	chr17:79524330-79524569(-)$1	239	2	7	15.0000
hhhhh	chr1:17733622-17733875(-)$1	253	161	166	15.0000
dd[bb	chr19:1582518-1582758(-)$1	240	38	43	15.0000
c[===	chr8:143817998-143818311(+)$1	313	85	90	15.0000
hhhhh	chr1:228286414-228286705(+)$1	291	132	137	15.0000
ee"""	chr19:2429549-2429804(-)$1	255	116	121	15.0000
CBBHH	chr16:50139134-50139393(+)$1	259	161	166	15.0000
cc:::	chr7:935128-935381(+)$1	253	113	118	15.0000
eeGGG	chr22:21976990-21977215(+)$1	225	27	32	15.0000
HHHHH	chr12:133297905-133298122(+)$1	217	130	135	15.0000
::DDD	chr10:75878305-75878554(+)$1	249	121	126	15.0000
]bbee	chr2:47130421-47130676(-)$1	255	228	233	15.0000
HHHHH	chr17:37076454-37076706(+)$1	252	28	33	15.0000
DDDD{	chr9:131910870-131911169(+)$1	299	35	40	15.0000
cceee	chr15:89739349-89739652(+)$1	303	207	212	15.0000
fffff	chr14:21928727-21928986(-)$1	259	51	56	15.0000
fffff	chr1:19542567-19542833(-)$1	266	176	181	15.0000
ffff%	chr1:156219992-156220257(-)$1	265	43	48	15.0000
[eeee	chr17:56167314-56167565(+)$1	251	57	62	15.0000
""fff	chr9:125579299-125579581(-)$1	282	119	124	15.0000
:GGGG	chr19:39980934-39981191(+)$1	257	15	20	15.0000
d]eee	chr19:13206307-13206550(+)$1	243	135	140	15.0000
bb[cc	chr1:55530025-55530287(+)$1	262	121	126	15.0000
EEEEE	chr17:37075811-37076069(+)$1	258	123	128	15.0000
=====	chr22:19025234-19025487(-)$1	253	63	68	15.0000
::EEE	chr19:12811552-12811807(-)$1	255	180	185	15.0000
GG}BB	chr9:37503271-37503557(+)$1	286	276	281	15.0000
FF:dd	chr16:4740125-4740391(+)$1	266	25	30	15.0000
!gggg	chr16:89711145-89711409(-)$1	264	13	18	15.0000
ddccc	chrX:109417143-109417413(+)$1	270	150	155	15.0000
a]ggg	chr21:45177069-45177322(+)$1	253	151	156	15.0000
ggggg	chr9:131910686-131910968(+)$1	282	4	9	15.0000
[dddd	chr19:11033534-11033796(-)$1	262	148	153	15.0000
eeeee	chr19:47113412-47113718(+)$1	306	228	233	15.0000
ffff$	chr22:29902846-29903150(-)$1	304	80	85	15.0000
22ddd	chr19:3208332-3208613(+)$1	281	230	235	15.0000
FFFFc	chr22:21801627-21801887(+)$1	260	92	97	15.0000
eeeee	chr16:30786222-30786488(+)$1	266	58	63	15.0000
ggggg	chr10:75009757-75009991(-)$1	234	87	92	15.0000
DDDDD	chr19:2429604-2429876(-)$1	272	188	193	15.0000
:::ff	chr11:47491048-47491286(-)$1	238	26	31	15.0000
eeeel	chr11:66044144-66044379(+)$1	235	20	25	15.0000
fffff	chr12:98943116-98943357(+)$1	241	89	94	15.0000
IIIee	chr1:33789864-33790143(-)$1	279	206	211	15.0000
c[eee	chr22:41642106-41642384(-)$1	278	105	110	15.0000

#DB
..(((	chr9:131910447-131910712(+)$1	1	49	54	15.0000
((((.	chr3:48556535-48556787(-)$1	1	173	178	15.0000
....)	chr19:47113699-47113951(+)$1	1	89	94	15.0000
((..(	chr8:143817377-143817622(+)$1	1	2	7	15.0000
).)))	chr9:137024075-137024333(+)$1	1	231	236	15.0000
.))))	chr6:107362868-107363186(+)$1	1	128	133	15.0000
(....	chr13:114873518-114873786(-)$1	1	196	201	15.0000
)))..	chr6:38120945-38121245(+)$1	1	51	56	15.0000
(((((	chr17:80202225-80202487(-)$1	1	19	24	15.0000
)))))	chr22:22276220-22276511(-)$1	1	209	214	15.0000
))))(	chr7:73610388-73610685(+)$1	1	68	73	15.0000
((((.	chrX:54587324-54587598(+)$1	1	71	76	15.0000
..(((	chrX:109417973-109418248(+)$1	1	23	28	15.0000
(((((	chr19:18978468-18978744(+)$1	1	1	6	15.0000
(((..	chr11:62506863-62507128(+)$1	1	10	15	15.0000
(((..	chr10:75008614-75008896(-)$1	1	175	180	15.0000
(((((	chr1:154989877-154990164(+)$1	1	25	30	15.0000
(((((	chr19:51301646-51301929(-)$1	1	53	58	15.0000
((.(.	chr22:24970543-24970787(+)$1	1	224	229	15.0000
.(((.	chr16:31501591-31501871(-)$1	1	144	149	15.0000
)))))	chr19:7977411-7977644(+)$1	1	189	194	15.0000
.((((	chr17:45017674-45017948(+)$1	1	77	82	15.0000
...))	chr21:45945139-45945445(+)$1	1	160	165	15.0000
..(((	chr11:118915283-118915555(-)$1	1	162	167	15.0000
..)))	chr1:11849358-11849599(-)$1	1	50	55	15.0000
)))))	chr1:19542493-19542767(-)$1	1	110	115	15.0000
).((.	chr22:24969106-24969355(+)$1	1	38	43	15.0000
..)))	chr1:160968278-160968508(-)$1	1	115	120	15.0000
(((((	chr17:79524330-79524569(-)$1	1	2	7	15.0000
(((((	chr1:17733622-17733875(-)$1	1	161	166	15.0000
((.((	chr19:1582518-1582758(-)$1	1	38	43	15.0000
(.(((	chr8:143817998-143818311(+)$1	1	85	90	15.0000
)))))	chr1:228286414-228286705(+)$1	1	132	137	15.0000
((...	chr19:2429549-2429804(-)$1	1	116	121	15.0000
)))((	chr16:50139134-50139393(+)$1	1	161	166	15.0000
))...	chr7:935128-935381(+)$1	1	113	118	15.0000
))(((	chr22:21976990-21977215(+)$1	1	27	32	15.0000
)))))	chr12:133297905-133298122(+)$1	1	130	135	15.0000
..)))	chr10:75878305-75878554(+)$1	1	121	126	15.0000
.))))	chr2:47130421-47130676(-)$1	1	228	233	15.0000
(((((	chr17:37076454-37076706(+)$1	1	28	33	15.0000
((((.	chr9:131910870-131911169(+)$1	1	35	40	15.0000
(((((	chr15:89739349-89739652(+)$1	1	207	212	15.0000
(((((	chr14:21928727-21928986(-)$1	1	51	56	15.0000
)))))	chr1:19542567-19542833(-)$1	1	176	181	15.0000
((((.	chr1:156219992-156220257(-)$1	1	43	48	15.0000
.((((	chr17:56167314-56167565(+)$1	1	57	62	15.0000
..(((	chr9:125579299-125579581(-)$1	1	119	124	15.0000
.((((	chr19:39980934-39981191(+)$1	1	15	20	15.0000
).)))	chr19:13206307-13206550(+)$1	1	135	140	15.0000
((.((	chr1:55530025-55530287(+)$1	1	121	126	15.0000
)))))	chr17:37075811-37076069(+)$1	1	123	128	15.0000
(((((	chr22:19025234-19025487(-)$1	1	63	68	15.0000
..)))	chr19:12811552-12811807(-)$1	1	180	185	15.0000
)).))	chr9:37503271-37503557(+)$1	1	276	281	15.0000
((.((	chr16:4740125-4740391(+)$1	1	25	30	15.0000
.((((	chr16:89711145-89711409(-)$1	1	13	18	15.0000
(((((	chrX:109417143-109417413(+)$1	1	150	155	15.0000
).)))	chr21:45177069-45177322(+)$1	1	151	156	15.0000
(((((	chr9:131910686-131910968(+)$1	1	4	9	15.0000
.((((	chr19:11033534-11033796(-)$1	1	148	153	15.0000
)))))	chr19:47113412-47113718(+)$1	1	228	233	15.0000
((((.	chr22:29902846-29903150(-)$1	1	80	85	15.0000
..)))	chr19:3208332-3208613(+)$1	1	230	235	15.0000
(((((	chr22:21801627-21801887(+)$1	1	92	97	15.0000
)))))	chr16:30786222-30786488(+)$1	1	58	63	15.0000
)))))	chr10:75009757-75009991(-)$1	1	87	92	15.0000
)))))	chr19:2429604-2429876(-)$1	1	188	193	15.0000
...((	chr11:47491048-47491286(-)$1	1	26	31	15.0000
((((.	chr11:66044144-66044379(+)$1	1	20	25	15.0000
)))))	chr12:98943116-98943357(+)$1	1	89	94	15.0000
)))((	chr1:33789864-33790143(-)$1	1	206	211	15.0000
(.(((	chr22:41642106-41642384(-)$1	1	105	110	15.0000

#PSSM
C : 0.72	c : 0.27	
U : 0.72	u : 0.27	
G : 0.72	g : 0.27	
G : 0.72	g : 0.27	
G : 0.72	g : 0.27	

#score	1095.0000000000005
#seq	73
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_transcript_m2_run2.nuc.txt

#NT
ggcug	chr16:88584148-88584461(+)$1	313	11	16	14.9999
GGCUG	chr2:27294368-27294613(-)$1	245	200	205	14.9999
GGCUG	chr11:8704648-8704852(+)$1	204	35	40	14.9999
GGCUG	chr6:30688036-30688314(+)$1	278	270	275	14.9999
GGCUG	chr3:23958537-23958766(+)$1	229	51	56	14.9999
GGCUG	chr12:111180494-111180746(-)$1	252	19	24	14.9999
GGCUG	chr1:205719114-205719404(-)$1	290	80	85	14.9999
GGCUG	chr20:2451244-2451532(-)$1	288	125	130	14.9999
GGCUG	chr19:47731985-47732287(-)$1	302	116	121	14.9999
GGCUG	chr16:56642404-56642656(+)$1	252	197	202	14.9999
GGCUG	chr11:63742000-63742245(+)$1	245	117	122	14.9999
ggcug	chr17:18965295-18965531(+)$1	236	64	69	14.9999
GGCUG	chr3:52029768-52030022(-)$1	254	211	216	14.9999
ggcug	chr12:104518970-104519184(+)$1	214	191	196	14.9999
GGCUG	chr17:73042918-73043161(-)$1	243	23	28	14.9999
GGCUG	chr12:49523373-49523606(-)$1	233	130	135	14.9999
GGCUG	chr12:98909426-98909679(+)$1	253	186	191	14.9999
GGCUG	chr1:8021672-8021944(+)$1	272	59	64	14.9999
GGCUG	chr12:120933828-120934095(+)$1	267	68	73	14.9999
GGCUG	chr8:74205733-74205936(-)$1	203	79	84	14.9999
GGCUG	chr11:63742045-63742316(+)$1	271	72	77	14.9999
GGCUG	chr6:144416512-144416800(-)$1	288	257	262	14.9999
GGCUG	chr5:177019109-177019432(+)$1	323	76	81	14.9999
GGCUG	chr12:49663147-49663376(+)$1	229	129	134	14.9999
GGCUG	chr6:44214742-44214991(+)$1	249	44	49	14.9999
ggcug	chr8:28387857-28388118(+)$1	261	62	67	14.9999
GGCUG	chr2:61765242-61765499(-)$1	257	35	40	14.9999
ggcug	chr20:60962076-60962292(+)$1	216	147	152	14.9999
GGCUG	chr4:53117-53441(+)$1	324	295	300	14.9999
GGCUG	chr20:60962566-60962796(+)$1	230	218	223	14.9999
GGCUG	chr1:33502293-33502576(-)$1	283	19	24	14.9999
GGCUG	chrX:152961487-152961763(+)$1	276	164	169	14.9999
GGCUG	chr1:228645377-228645637(-)$1	260	186	191	14.9999
GGCUG	chr14:50052926-50053207(-)$1	281	252	257	14.9999
GGCUG	chr7:98479316-98479527(+)$1	211	25	30	14.9999
GGCUG	chr11:118272322-118272533(+)$1	211	186	191	14.9999
GGCUG	chr11:63448939-63449226(+)$1	287	19	24	14.9999
GGCUG	chr15:66797025-66797283(-)$1	258	120	125	14.9999
GGCUG	chr19:572492-572804(+)$1	312	147	152	14.9999
GGCUG	chr8:100904081-100904336(-)$1	255	155	160	14.9999
GGCUG	chr16:18801529-18801757(-)$1	228	217	222	14.9999
GGCUG	chr5:1801446-1801708(+)$1	262	110	115	14.9999
GGCUG	chr11:5290928-5291136(-)$1	208	42	47	14.9999
GGCUG	chr11:5290936-5291159(-)$1	223	65	70	14.9999
GGCUG	chr6:31704057-31704309(-)$1	252	58	63	14.9999
GGCUG	chr11:5290985-5291212(-)$1	227	118	123	14.9999
GGCUG	chr20:57607210-57607495(-)$1	285	113	118	14.9999
GGCUG	chr15:45003618-45003913(+)$1	295	50	55	14.9999
GGCUG	chr12:56122635-56122890(-)$1	255	39	44	14.9999
GGCUG	chr22:24951875-24952129(+)$1	254	168	173	14.9999
ggcug	chr20:60962276-60962507(+)$1	231	10	15	14.9999
GGCUG	chr4:103748513-103748787(-)$1	274	104	109	14.9999
GGCUG	chr21:35287931-35288190(-)$1	259	125	130	14.9999

#otherMatches

#Struct PSSM
qqddd	chr19:18682573-18682820(+)$1	247	174	179	14.9999
[ccc$	chr16:88584148-88584461(+)$1	313	11	16	14.9999
=====	chr2:27294368-27294613(-)$1	245	200	205	14.9999
ccc[b	chr11:8704648-8704852(+)$1	204	35	40	14.9999
HHHHH	chr6:30688036-30688314(+)$1	278	270	275	14.9999
=====	chr3:23958537-23958766(+)$1	229	51	56	14.9999
ggggg	chr12:111180494-111180746(-)$1	252	19	24	14.9999
HHHYY	chr1:205719114-205719404(-)$1	290	80	85	14.9999
cc333	chr20:2451244-2451532(-)$1	288	125	130	14.9999
ddddd	chr19:47731985-47732287(-)$1	302	116	121	14.9999
ccc22	chr16:56642404-56642656(+)$1	252	197	202	14.9999
ddmmm	chr11:63742000-63742245(+)$1	245	117	122	14.9999
ooooe	chr17:18965295-18965531(+)$1	236	64	69	14.9999
hha22	chr3:52029768-52030022(-)$1	254	211	216	14.9999
EEEEE	chr12:104518970-104519184(+)$1	214	191	196	14.9999
eeeee	chr17:73042918-73043161(-)$1	243	23	28	14.9999
fff[d	chr12:49523373-49523606(-)$1	233	130	135	14.9999
====e	chr12:98909426-98909679(+)$1	253	186	191	14.9999
CCCKK	chr1:8021672-8021944(+)$1	272	59	64	14.9999
Geeee	chr12:120933828-120934095(+)$1	267	68	73	14.9999
mmmmd	chr8:74205733-74205936(-)$1	203	79	84	14.9999
ddmmm	chr11:63742045-63742316(+)$1	271	72	77	14.9999
[bb[d	chr6:144416512-144416800(-)$1	288	257	262	14.9999
gccc[	chr5:177019109-177019432(+)$1	323	76	81	14.9999
fff[d	chr12:49663147-49663376(+)$1	229	129	134	14.9999
[eeee	chr6:44214742-44214991(+)$1	249	44	49	14.9999
iiiii	chr8:28387857-28388118(+)$1	261	62	67	14.9999
CCCCK	chr2:61765242-61765499(-)$1	257	35	40	14.9999
dd22a	chr20:60962076-60962292(+)$1	216	147	152	14.9999
hhhhh	chr4:53117-53441(+)$1	324	295	300	14.9999
CCC}C	chr20:60962566-60962796(+)$1	230	218	223	14.9999
FFFF:	chr1:33502293-33502576(-)$1	283	19	24	14.9999
ccc33	chrX:152961487-152961763(+)$1	276	164	169	14.9999
ggqqq	chr1:228645377-228645637(-)$1	260	186	191	14.9999
444a]	chr14:50052926-50053207(-)$1	281	252	257	14.9999
FFFFF	chr7:98479316-98479527(+)$1	211	25	30	14.9999
gggg[	chr11:118272322-118272533(+)$1	211	186	191	14.9999
fffff	chr11:63448939-63449226(+)$1	287	19	24	14.9999
[ccco	chr15:66797025-66797283(-)$1	258	120	125	14.9999
fff[c	chr19:572492-572804(+)$1	312	147	152	14.9999
ddd33	chr8:100904081-100904336(-)$1	255	155	160	14.9999
d22cc	chr16:18801529-18801757(-)$1	228	217	222	14.9999
DDD}G	chr5:1801446-1801708(+)$1	262	110	115	14.9999
eeee!	chr11:5290928-5291136(-)$1	208	42	47	14.9999
]bb]e	chr11:5290936-5291159(-)$1	223	65	70	14.9999
DDDDD	chr6:31704057-31704309(-)$1	252	58	63	14.9999
eeee!	chr11:5290985-5291212(-)$1	227	118	123	14.9999
ddnnn	chr20:57607210-57607495(-)$1	285	113	118	14.9999
CCKKF	chr15:45003618-45003913(+)$1	295	50	55	14.9999
DD{CC	chr12:56122635-56122890(-)$1	255	39	44	14.9999
ddddd	chr22:24951875-24952129(+)$1	254	168	173	14.9999
d[fff	chr20:60962276-60962507(+)$1	231	10	15	14.9999
]eeee	chr4:103748513-103748787(-)$1	274	104	109	14.9999
ccddd	chr21:35287931-35288190(-)$1	259	125	130	14.9999

#DB
..)))	chr19:18682573-18682820(+)$1	1	174	179	14.9999
.(((.	chr16:88584148-88584461(+)$1	1	11	16	14.9999
)))))	chr2:27294368-27294613(-)$1	1	200	205	14.9999
(((.(	chr11:8704648-8704852(+)$1	1	35	40	14.9999
)))))	chr6:30688036-30688314(+)$1	1	270	275	14.9999
(((((	chr3:23958537-23958766(+)$1	1	51	56	14.9999
(((((	chr12:111180494-111180746(-)$1	1	19	24	14.9999
)))..	chr1:205719114-205719404(-)$1	1	80	85	14.9999
))...	chr20:2451244-2451532(-)$1	1	125	130	14.9999
(((((	chr19:47731985-47732287(-)$1	1	116	121	14.9999
)))..	chr16:56642404-56642656(+)$1	1	197	202	14.9999
((...	chr11:63742000-63742245(+)$1	1	117	122	14.9999
....)	chr17:18965295-18965531(+)$1	1	64	69	14.9999
)))..	chr3:52029768-52030022(-)$1	1	211	216	14.9999
)))))	chr12:104518970-104519184(+)$1	1	191	196	14.9999
)))))	chr17:73042918-73043161(-)$1	1	23	28	14.9999
(((.(	chr12:49523373-49523606(-)$1	1	130	135	14.9999
)))))	chr12:98909426-98909679(+)$1	1	186	191	14.9999
(((..	chr1:8021672-8021944(+)$1	1	59	64	14.9999
(((((	chr12:120933828-120934095(+)$1	1	68	73	14.9999
....)	chr8:74205733-74205936(-)$1	1	79	84	14.9999
((...	chr11:63742045-63742316(+)$1	1	72	77	14.9999
.((.(	chr6:144416512-144416800(-)$1	1	257	262	14.9999
((((.	chr5:177019109-177019432(+)$1	1	76	81	14.9999
(((.(	chr12:49663147-49663376(+)$1	1	129	134	14.9999
.((((	chr6:44214742-44214991(+)$1	1	44	49	14.9999
(((((	chr8:28387857-28388118(+)$1	1	62	67	14.9999
((((.	chr2:61765242-61765499(-)$1	1	35	40	14.9999
))..)	chr20:60962076-60962292(+)$1	1	147	152	14.9999
)))))	chr4:53117-53441(+)$1	1	295	300	14.9999
))).)	chr20:60962566-60962796(+)$1	1	218	223	14.9999
((((.	chr1:33502293-33502576(-)$1	1	19	24	14.9999
)))..	chrX:152961487-152961763(+)$1	1	164	169	14.9999
((...	chr1:228645377-228645637(-)$1	1	186	191	14.9999
...).	chr14:50052926-50053207(-)$1	1	252	257	14.9999
(((((	chr7:98479316-98479527(+)$1	1	25	30	14.9999
((((.	chr11:118272322-118272533(+)$1	1	186	191	14.9999
(((((	chr11:63448939-63449226(+)$1	1	19	24	14.9999
.(((.	chr15:66797025-66797283(-)$1	1	120	125	14.9999
(((.(	chr19:572492-572804(+)$1	1	147	152	14.9999
)))..	chr8:100904081-100904336(-)$1	1	155	160	14.9999
)..))	chr16:18801529-18801757(-)$1	1	217	222	14.9999
))).)	chr5:1801446-1801708(+)$1	1	110	115	14.9999
((((.	chr11:5290928-5291136(-)$1	1	42	47	14.9999
.)).)	chr11:5290936-5291159(-)$1	1	65	70	14.9999
(((((	chr6:31704057-31704309(-)$1	1	58	63	14.9999
((((.	chr11:5290985-5291212(-)$1	1	118	123	14.9999
((...	chr20:57607210-57607495(-)$1	1	113	118	14.9999
((..(	chr15:45003618-45003913(+)$1	1	50	55	14.9999
((.((	chr12:56122635-56122890(-)$1	1	39	44	14.9999
)))))	chr22:24951875-24952129(+)$1	1	168	173	14.9999
(.(((	chr20:60962276-60962507(+)$1	1	10	15	14.9999
.))))	chr4:103748513-103748787(-)$1	1	104	109	14.9999
(((((	chr21:35287931-35288190(-)$1	1	125	130	14.9999

#PSSM
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
C : 0.88	c : 0.11	
U : 0.88	u : 0.11	
G : 0.88	g : 0.11	

#score	809.9999999999999
#seq	54
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_UTR_m1_run2.nuc.txt

#NT
Uaaggagaagaagaagaagaaga	chr9:139734504-139734766(+)$1	262	123	146	40.8749
GAAGAAGAAGAAGGCACAGGAGG	chr15:44063286-44063547(+)$1	261	99	122	28.0624
aaagaaaaaaaagaaaaagaaga	chr8:98725797-98726102(+)$1	305	148	171	38.7916
gaagaagaaaaagaaaaagaaga	chr14:102551125-102551383(-)$1	258	108	131	46.0833
GCUgaagaaaacaagaaagaaga	chr7:134617935-134618251(+)$1	316	122	145	27.1250
AAAGAAGAAGAAGAUUCAGAAGA	chr19:10791838-10792111(+)$1	273	141	164	35.6666
acaaaaggagaggaagaagaaga	chr16:11933538-11933806(-)$1	268	2	25	30.8749
CAAGAAGAAGAUGGAAGAGAAGC	chr5:140083993-140084257(+)$1	264	93	116	30.0416
GAAGAAGGAGAAAAAACAGAAGA	chr1:46072049-46072331(+)$1	282	156	179	36.3958
CCAGAAGAAAAACCAGAAGAAGA	chr3:9487310-9487527(+)$1	217	42	65	31.8124
GAAGAUGGUUAUGAAGAAGAAGA	chr17:73664511-73664806(+)$1	295	149	172	31.6041
GAAGCAGAGGAAGAACAAGAAGA	chr22:42017898-42018196(+)$1	298	152	175	39.1041
gaagaugaugaagaugaagaaga	chr8:124382085-124382366(-)$1	281	206	229	37.8541
agagaagaaaaagaaaaagaaga	chr4:113568222-113568559(+)$1	337	133	156	39.6250
GAAGAGGAAGAAGAAAGAGGAGG	chr11:3023665-3023937(-)$1	272	118	141	32.3333
gaggaagagACAGCAAAGGAAGA	chr1:90493041-90493307(+)$1	266	156	179	29.1041
GAGGUagacgaagaagaggaaga	chr2:232576555-232576782(+)$1	227	77	100	35.3541
GAAGAAGAGGAGGAAGAAGAAGA	chr6:108192791-108193099(-)$1	308	159	182	42.3333
GAGGUagacgaagaagaggaaga	chr2:232576503-232576755(+)$1	252	129	152	35.3541
GAAGAAGAAAGUGAAGAUGAAGA	chr3:142761886-142762160(+)$1	274	76	99	35.1458
Caaggagaaaacgaagagaaaga	chr16:11933622-11933908(-)$1	286	70	93	28.5833
GAGGAAGAGGAUGGAGAUGAAGA	chr2:232577123-232577326(+)$1	203	31	54	32.0208
gaagaagaagaagaaagaaagga	chr1:156259951-156260245(-)$1	294	137	160	35.4583
GAAGAAGCCAAAAAAACAGAAGA	chr1:46072982-46073280(+)$1	298	63	86	31.9166
AAAAAAGAUGAAGAAAAAGAAGA	chr12:76449795-76450044(-)$1	249	139	162	38.8958
AAAAAAGAUGAAGAAAAAGAAGA	chr12:76449744-76449995(-)$1	251	90	113	38.8958
GAAGAAGAAGAAGGCACAGGAGG	chr15:44063231-44063486(+)$1	255	154	177	28.0624
gaagaagaggaagaagaagaaga	chr17:4575470-4575730(-)$1	260	124	147	45.4583
GAAAUUgaaaaagaaaaagaaga	chr20:60711810-60712092(-)$1	282	123	146	34.9375
GAAGAAGGUGAAGAAGGAGAAGA	chr11:2972904-2973147(-)$1	243	111	134	38.2708
CCAGAAGAAAAACCAGAAGAAGA	chr3:9487240-9487488(+)$1	248	112	135	31.8124
ugacaagaagaagaagaagaaga	chr14:102550991-102551263(-)$1	272	80	103	36.7083
gaggaggaagaagagaaggaaga	chr6:43738580-43738893(+)$1	313	148	171	34.1041
GAAUAAGAGAAAGAAAAUGAAGA	chr4:74286711-74286937(+)$1	226	107	130	36.2916
GAAGAAGAAAAAGAAAAACAACC	chr8:61693573-61693920(+)$1	347	110	133	32.8541
GAGGUAGAAGAAGAUAGUGAAGA	chr2:232327818-232328124(-)$1	306	145	168	30.2499
gaagaggcagaggaagaggaaga	chr18:19208921-19209213(+)$1	292	107	130	34.2083
gaagaggaagaggaagaagaaga	chr17:3721612-3721951(-)$1	339	141	164	41.2916
GAUGAGGAAGAAGAAGAAGAGGA	chr12:6879243-6879473(+)$1	230	78	101	36.4999
gaagaggaagaggaagaugaaga	chr11:129991501-129991803(+)$1	302	133	156	38.0624
Aaagaagaagaagaagaagaaaa	chr10:82049093-82049454(-)$1	361	182	205	40.9791
Caagaaggaaaagaagaagagua	chrX:154004433-154004701(+)$1	268	87	110	31.1874
gaagaagaaaaagaaaaagaaga	chr14:102551063-102551322(-)$1	259	47	70	46.0833
gaagaagagcaaacacaagaaga	chr9:139734731-139734982(+)$1	251	62	85	32.4374
AAAAAAGAUGAAGAAAAAGAAGA	chr12:76449711-76449944(-)$1	233	39	62	38.8958
UGAGAAGAUAAAGAAGAAGAAAA	chr16:4909765-4910071(+)$1	306	123	146	32.6458
GAGGAAGAAGAGGAGGAAGAGGG	chr2:219134027-219134360(-)$1	333	138	161	29.6249

#otherMatches

#Struct PSSM
!!a[eeeee[ccc"""iiiiiii	chr2:232576582-232576794(+)$1	212	50	73	35.3541
mmmmccc::::::::::::::::	chr9:139734504-139734766(+)$1	262	123	146	40.8749
^^^^^^^^^ccc333eeeee]bb	chr15:44063286-44063547(+)$1	261	99	122	28.0624
EEEEYYEEEEE~~~~DDDD}DDD	chr8:98725797-98726102(+)$1	305	148	171	38.7916
:::::::::::::::::::::::	chr14:102551125-102551383(-)$1	258	108	131	46.0833
dddd:::::::::::::::::::	chr7:134617935-134618251(+)$1	316	122	145	27.1250
:::cccqqqqqqqqccc::::::	chr19:10791838-10792111(+)$1	273	141	164	35.6666
:::::::::::CCCSSSSSSSSS	chr16:11933538-11933806(-)$1	268	2	25	30.8749
HH:::::::::::::::::::::	chr5:140083993-140084257(+)$1	264	93	116	30.0416
}FFFFFF:::::::::dddd[bb	chr1:46072049-46072331(+)$1	282	156	179	36.3958
]ccc:::::::::dddd!!gggg	chr3:9487310-9487527(+)$1	217	42	65	31.8124
HHHHHHHH}BBYYFFFFFFGGGG	chr17:73664511-73664806(+)$1	295	149	172	31.6041
FFFFF:EEEEE::::ddddqqqq	chr22:42017898-42018196(+)$1	298	152	175	39.1041
b####dddd^^^^^^^^^^^^^^	chr8:124382085-124382366(-)$1	281	206	229	37.8541
^^^^^^^^^^^^^^^^^^^^^^^	chr4:113568222-113568559(+)$1	337	133	156	39.6250
d]eeeee:::::::::::GGGGG	chr11:3023665-3023937(-)$1	272	118	141	32.3333
^^^^^^^^^^^^^^^^^^^^^^^	chr1:90493041-90493307(+)$1	266	156	179	29.1041
::a[eeeee[ccc"""iiiiiii	chr2:232576555-232576782(+)$1	227	77	100	35.3541
ZZZBBYYJJJJJJJJJJJYYEEE	chr6:108192791-108193099(-)$1	308	159	182	42.3333
::a[eeeee[ccc"""iiiiiii	chr2:232576503-232576755(+)$1	252	129	152	35.3541
f]bbdddd]dddd:CCC{CCCOO	chr3:142761886-142762160(+)$1	274	76	99	35.1458
hh666666dddd:::::::::::	chr16:11933622-11933908(-)$1	286	70	93	28.5833
oobb]ggggggg]bb55555bb]	chr2:232577123-232577326(+)$1	203	31	54	32.0208
22============:GGGGGGG{	chr1:156259951-156260245(-)$1	294	137	160	35.4583
::::::ffffff"""bbrrrrrr	chr1:46072982-46073280(+)$1	298	63	86	31.9166
c55555ggggggg22ddddffff	chr12:76449795-76450044(-)$1	249	139	162	38.8958
a22ccc]bb88888888ccceee	chr12:76449744-76449995(-)$1	251	90	113	38.8958
eeeee333ffffff22cccEEEE	chr15:44063231-44063486(+)$1	255	154	177	28.0624
:::::::::::::::::::::::	chr17:4575470-4575730(-)$1	260	124	147	45.4583
^^^^^^^^^^^^^^^^^^^^^^^	chr20:60711810-60712092(-)$1	282	123	146	34.9375
b]eeeee4444ggggggg]a555	chr11:2972904-2973147(-)$1	243	111	134	38.2708
G::::::::::::::::::::::	chr3:9487240-9487488(+)$1	248	112	135	31.8124
^^^^^^^^^^^^^^^^^^^^^^^	chr14:102550991-102551263(-)$1	272	80	103	36.7083
cc]eeeee:::::::::::::::	chr6:43738580-43738893(+)$1	313	148	171	34.1041
=========GGGGGGG::eeeee	chr4:74286711-74286937(+)$1	226	107	130	36.2916
^^^^^^^^^^^^^^^^^^^^^^^	chr8:61693573-61693920(+)$1	347	110	133	32.8541
ffff]bb::::::::::::::::	chr2:232327818-232328124(-)$1	306	145	168	30.2499
qqqqqqccc==============	chr18:19208921-19209213(+)$1	292	107	130	34.2083
5555hhhhhhhh]a22dddd:DD	chr17:3721612-3721951(-)$1	339	141	164	41.2916
mmmdddd]bb4444eeeee]bb]	chr12:6879243-6879473(+)$1	230	78	101	36.4999
:::::eeeee[bb!!========	chr11:129991501-129991803(+)$1	302	133	156	38.0624
22dddd>>>>>>>>>>>>>>>>>	chr10:82049093-82049454(-)$1	361	182	205	40.9791
:::::::::::::JJJJJJJJJJ	chrX:154004433-154004701(+)$1	268	87	110	31.1874
:::::::::::::::::::::::	chr14:102551063-102551322(-)$1	259	47	70	46.0833
::::::::bbvvvvvvvvvvvvv	chr9:139734731-139734982(+)$1	251	62	85	32.4374
::::eeeee!!bb$$$$$ccc!!	chr12:76449711-76449944(-)$1	233	39	62	38.8958
eeee^^^^^^^^^^^^^^^^^^^	chr16:4909765-4910071(+)$1	306	123	146	32.6458
dddd333ffffff]bb]dddddd	chr2:219134027-219134360(-)$1	333	138	161	29.6249

#DB
..(.(((((.(((...(((((((	chr2:232576582-232576794(+)$1	1	50	73	35.3541
....)))................	chr9:139734504-139734766(+)$1	1	123	146	40.8749
.........)))...))))).))	chr15:44063286-44063547(+)$1	1	99	122	28.0624
))))..)))))....)))).)))	chr8:98725797-98726102(+)$1	1	148	171	38.7916
.......................	chr14:102551125-102551383(-)$1	1	108	131	46.0833
))))...................	chr7:134617935-134618251(+)$1	1	122	145	27.1250
...(((........)))......	chr19:10791838-10792111(+)$1	1	141	164	35.6666
...........(((.........	chr16:11933538-11933806(-)$1	1	2	25	30.8749
)).....................	chr5:140083993-140084257(+)$1	1	93	116	30.0416
.)))))).........((((.((	chr1:46072049-46072331(+)$1	1	156	179	36.3958
.))).........((((..((((	chr3:9487310-9487527(+)$1	1	42	65	31.8124
)))))))).))..))))))))))	chr17:73664511-73664806(+)$1	1	149	172	31.6041
))))).(((((....((((....	chr22:42017898-42018196(+)$1	1	152	175	39.1041
(....((((..............	chr8:124382085-124382366(-)$1	1	206	229	37.8541
.......................	chr4:113568222-113568559(+)$1	1	133	156	39.6250
).)))))...........(((((	chr11:3023665-3023937(-)$1	1	118	141	32.3333
.......................	chr1:90493041-90493307(+)$1	1	156	179	29.1041
..(.(((((.(((...(((((((	chr2:232576555-232576782(+)$1	1	77	100	35.3541
...))..)))))))))))..)))	chr6:108192791-108193099(-)$1	1	159	182	42.3333
..(.(((((.(((...(((((((	chr2:232576503-232576755(+)$1	1	129	152	35.3541
).)))))).)))).(((.(((..	chr3:142761886-142762160(+)$1	1	76	99	35.1458
))......))))...........	chr16:11933622-11933908(-)$1	1	70	93	28.5833
..)).))))))).)).....)).	chr2:232577123-232577326(+)$1	1	31	54	32.0208
..)))))))))))).(((((((.	chr1:156259951-156260245(-)$1	1	137	160	35.4583
......((((((...((......	chr1:46072982-46073280(+)$1	1	63	86	31.9166
).....)))))))..))))))))	chr12:76449795-76450044(-)$1	1	139	162	38.8958
)..))).))........))))))	chr12:76449744-76449995(-)$1	1	90	113	38.8958
)))))...))))))..)))))))	chr15:44063231-44063486(+)$1	1	154	177	28.0624
.......................	chr17:4575470-4575730(-)$1	1	124	147	45.4583
.......................	chr20:60711810-60712092(-)$1	1	123	146	34.9375
).)))))....))))))).)...	chr11:2972904-2973147(-)$1	1	111	134	38.2708
)......................	chr3:9487240-9487488(+)$1	1	112	135	31.8124
.......................	chr14:102550991-102551263(-)$1	1	80	103	36.7083
)).)))))...............	chr6:43738580-43738893(+)$1	1	148	171	34.1041
)))))))))(((((((..(((((	chr4:74286711-74286937(+)$1	1	107	130	36.2916
.......................	chr8:61693573-61693920(+)$1	1	110	133	32.8541
)))).))................	chr2:232327818-232328124(-)$1	1	145	168	30.2499
......)))))))))))))))))	chr18:19208921-19209213(+)$1	1	107	130	34.2083
....)))))))).)..)))).))	chr17:3721612-3721951(-)$1	1	141	164	41.2916
...)))).))....))))).)).	chr12:6879243-6879473(+)$1	1	78	101	36.4999
.....(((((.((..((((((((	chr11:129991501-129991803(+)$1	1	133	156	38.0624
..)))).................	chr10:82049093-82049454(-)$1	1	182	205	40.9791
.............((((((((((	chrX:154004433-154004701(+)$1	1	87	110	31.1874
.......................	chr14:102551063-102551322(-)$1	1	47	70	46.0833
........((.............	chr9:139734731-139734982(+)$1	1	62	85	32.4374
....(((((..((.....(((..	chr12:76449711-76449944(-)$1	1	39	62	38.8958
((((...................	chr16:4909765-4910071(+)$1	1	123	146	32.6458
))))...)))))).)).))))))	chr2:219134027-219134360(-)$1	1	138	161	29.6249

#PSSM
G : 0.43	g : 0.22	A : 0.10	C : 0.10	a : 0.06	U : 0.04	u : 0.02	
A : 0.52	a : 0.33	C : 0.06	g : 0.04	c : 0.02	G : 0.02	
A : 0.43	a : 0.35	G : 0.12	U : 0.04	g : 0.04	
G : 0.47	g : 0.37	A : 0.08	a : 0.02	c : 0.02	U : 0.02	
A : 0.45	a : 0.37	U : 0.10	g : 0.04	C : 0.02	
A : 0.43	a : 0.37	g : 0.08	U : 0.04	G : 0.04	u : 0.02	
G : 0.49	g : 0.47	a : 0.02	
a : 0.43	A : 0.41	G : 0.06	g : 0.04	C : 0.02	c : 0.02	
a : 0.35	A : 0.27	U : 0.12	G : 0.08	c : 0.06	g : 0.06	u : 0.02	C : 0.02	
G : 0.33	g : 0.29	a : 0.16	A : 0.16	U : 0.02	c : 0.02	
a : 0.47	A : 0.47	C : 0.02	G : 0.02	
A : 0.39	a : 0.35	g : 0.08	U : 0.08	c : 0.04	G : 0.04	
g : 0.43	G : 0.43	a : 0.04	A : 0.04	C : 0.04	
a : 0.45	A : 0.37	G : 0.08	C : 0.06	c : 0.02	
a : 0.41	A : 0.41	C : 0.04	g : 0.04	U : 0.04	u : 0.02	G : 0.02	
g : 0.29	A : 0.27	G : 0.20	a : 0.16	U : 0.02	C : 0.02	c : 0.02	
a : 0.45	A : 0.33	C : 0.10	G : 0.08	g : 0.02	
A : 0.41	a : 0.33	g : 0.12	U : 0.08	G : 0.02	u : 0.02	
G : 0.49	g : 0.43	a : 0.04	C : 0.02	
a : 0.47	A : 0.45	G : 0.06	
A : 0.47	a : 0.43	g : 0.04	G : 0.04	
G : 0.47	g : 0.43	C : 0.02	a : 0.02	u : 0.02	A : 0.02	
a : 0.47	A : 0.39	G : 0.08	C : 0.04	

#score	1695.3333333333333
#seq	48
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_UTR_m2_run2.nuc.txt

#NT
CAUGAACACAGCUCACA	chr11:2152595-2152805(-)$1	210	61	78	46.5555
caugaacacagcacaca	chr11:2152765-2152983(-)$1	218	107	124	49.5555
caugaacacagcacaca	chr11:2153241-2153446(-)$1	205	136	153	49.5555
CAUGAACACAGCUCACA	chr11:2152588-2152795(-)$1	207	51	68	46.5555
caugaacacagcacaca	chr11:2153246-2153457(-)$1	211	147	164	49.5555
caugaacacagcacaca	chr11:2152845-2153051(-)$1	206	175	192	49.5555
caugaacacagcacaca	chr11:2153275-2153493(-)$1	218	183	200	49.5555
caugaacacagcacaca	chr11:2152648-2152851(-)$1	203	33	50	49.5555
cgagcacacagcacaca	chr11:2153014-2153237(-)$1	223	155	172	35.3333
caugaacacagcacaca	chr11:2152624-2152827(-)$1	203	9	26	49.5555
caugaacacagcacaca	chr11:2152669-2152876(-)$1	207	0	17	49.5555
caugaacacagcacaca	chr11:2152722-2152929(-)$1	207	53	70	49.5555
CAUGAACACAGCUCACA	chr11:2152562-2152764(-)$1	202	20	37	46.5555
caugaacacagcacaca	chr11:2152717-2152922(-)$1	205	46	63	49.5555
CAUGAACACAGCUCACA	chr11:2152577-2152782(-)$1	205	38	55	46.5555
caugaacacagcacaca	chr11:2153209-2153417(-)$1	208	107	124	49.5555
caugaacacagcacaca	chr11:2152729-2152933(-)$1	204	57	74	49.5555
caugaacacagcacaca	chr11:2152799-2153027(-)$1	228	151	168	49.5555
CAUGAACACAGCUCACA	chr11:2152612-2152816(-)$1	204	72	89	46.5555
caugaacacagcacaca	chr11:2152616-2152818(-)$1	202	0	17	49.5555
caugaacacagcacaca	chr11:2152657-2152861(-)$1	204	43	60	49.5555
caugaacacagcacaca	chr11:2153257-2153463(-)$1	206	153	170	49.5555
caugaacacagcacaca	chr11:2152703-2152909(-)$1	206	33	50	49.5555
caugaacacagcacaca	chr11:2153217-2153431(-)$1	214	121	138	49.5555
caugaacacagcacaca	chr11:2152758-2152965(-)$1	207	89	106	49.5555
caugaacacagcacaca	chr11:2152733-2152936(-)$1	203	60	77	49.5555
caugaacacagcacaca	chr11:2152651-2152857(-)$1	206	39	56	49.5555
caugaacacagcacaca	chr11:2152736-2152940(-)$1	204	64	81	49.5555
caugaacacagcacaca	chr11:2152619-2152824(-)$1	205	6	23	49.5555
cacgaacacagcacaca	chr11:2152864-2153095(-)$1	231	144	161	44.8888
caugaacacagcacaca	chr11:2152709-2152913(-)$1	204	37	54	49.5555
caugaacacagcacaca	chr11:2152827-2153045(-)$1	218	169	186	49.5555
caugaacacagcacaca	chr11:2153157-2153382(-)$1	225	72	89	49.5555
caugaacacagcacaca	chr11:2152851-2153064(-)$1	213	188	205	49.5555
caugaacacagcacaca	chr11:2153232-2153441(-)$1	209	131	148	49.5555
CAUGAACACAGCUCACA	chr11:2152541-2152749(-)$1	208	5	22	46.5555
CAUGAACACAGCUCACA	chr11:2152582-2152788(-)$1	206	44	61	46.5555
caugaacacagcacaca	chr11:2153200-2153409(-)$1	209	99	116	49.5555
caugaacacagcacaca	chr11:2153263-2153475(-)$1	212	165	182	49.5555
caugaacacagcacaca	chr11:2152698-2152903(-)$1	205	27	44	49.5555
caugaacacagcacaca	chr11:2152741-2152948(-)$1	207	72	89	49.5555
CAUGAACACAGCUCACA	chr11:2152605-2152812(-)$1	207	68	85	46.5555
CAUGAACACAGCUCACA	chr11:2152564-2152775(-)$1	211	31	48	46.5555
caugaacacagcacaca	chr11:2152663-2152869(-)$1	206	51	68	49.5555

#otherMatches

#Struct PSSM
EEEE::::::bb[aooo	chr11:2153182-2153390(-)$1	208	80	97	49.5555
eeeee:::::ccclllc	chr11:2152595-2152805(-)$1	210	61	78	46.5555
DDDD::::::bbnnnnn	chr11:2152765-2152983(-)$1	218	107	124	49.5555
EEEE:::::::::::::	chr11:2153241-2153446(-)$1	205	136	153	49.5555
FF{BB:::::ccclllc	chr11:2152588-2152795(-)$1	207	51	68	46.5555
b[bbmmmmbbbb:::::	chr11:2153246-2153457(-)$1	211	147	164	49.5555
dddd%%%%%%bbnnnnn	chr11:2152845-2153051(-)$1	206	175	192	49.5555
b[bbmmmmbbbb:::::	chr11:2153275-2153493(-)$1	218	183	200	49.5555
vvvvvvvvvvbb:::::	chr11:2152648-2152851(-)$1	203	33	50	49.5555
oa]bb:::::bbqqqqq	chr11:2153014-2153237(-)$1	223	155	172	35.3333
CCC::::::::::::::	chr11:2152624-2152827(-)$1	203	9	26	49.5555
DDDD::::::bbnnnnn	chr11:2152669-2152876(-)$1	207	0	17	49.5555
EEEEE:::::bbnnnnn	chr11:2152722-2152929(-)$1	207	53	70	49.5555
::::::::::ccclllc	chr11:2152562-2152764(-)$1	202	20	37	46.5555
EEEEE:::::bbnnnnn	chr11:2152717-2152922(-)$1	205	46	63	49.5555
FF{BB:::::ccclllc	chr11:2152577-2152782(-)$1	205	38	55	46.5555
b[bbmmmmbbbb:::::	chr11:2153209-2153417(-)$1	208	107	124	49.5555
DDDD::::::bbnnnnn	chr11:2152729-2152933(-)$1	204	57	74	49.5555
::::::::::bbnnnnn	chr11:2152799-2153027(-)$1	228	151	168	49.5555
eeeee:::::ccclllc	chr11:2152612-2152816(-)$1	204	72	89	46.5555
::::::::::BB:::::	chr11:2152616-2152818(-)$1	202	0	17	49.5555
vvvvvvvvvvbb:::::	chr11:2152657-2152861(-)$1	204	43	60	49.5555
b:::::::::bb[aooo	chr11:2153257-2153463(-)$1	206	153	170	49.5555
DDDD::::::bbnnnnn	chr11:2152703-2152909(-)$1	206	33	50	49.5555
b[bbmmmmbbbb:::::	chr11:2153217-2153431(-)$1	214	121	138	49.5555
DDDD::::::bbnnnnn	chr11:2152758-2152965(-)$1	207	89	106	49.5555
DDDD::::::bbnnnnn	chr11:2152733-2152936(-)$1	203	60	77	49.5555
vvvvvvvvvvbb:::::	chr11:2152651-2152857(-)$1	206	39	56	49.5555
DDDD::::::bbnnnnn	chr11:2152736-2152940(-)$1	204	64	81	49.5555
::::::::::BB:::::	chr11:2152619-2152824(-)$1	205	6	23	49.5555
::::::::::bbppppp	chr11:2152864-2153095(-)$1	231	144	161	44.8888
DDDD::::::bbnnnnn	chr11:2152709-2152913(-)$1	204	37	54	49.5555
::::::::::bbnnnnn	chr11:2152827-2153045(-)$1	218	169	186	49.5555
EEEE::::::bb[aooo	chr11:2153157-2153382(-)$1	225	72	89	49.5555
::::::::::bbnnnnn	chr11:2152851-2153064(-)$1	213	188	205	49.5555
EEEE:::::::::::::	chr11:2153232-2153441(-)$1	209	131	148	49.5555
::::::::::EEEEE{A	chr11:2152541-2152749(-)$1	208	5	22	46.5555
eeeee:::::ccclllc	chr11:2152582-2152788(-)$1	206	44	61	46.5555
b[bbmmmmbbbb:::::	chr11:2153200-2153409(-)$1	209	99	116	49.5555
b[bbmmmmbbbb:::::	chr11:2153263-2153475(-)$1	212	165	182	49.5555
EEEEE:::::bbnnnnn	chr11:2152698-2152903(-)$1	205	27	44	49.5555
EEEEE:::::bbnnnnn	chr11:2152741-2152948(-)$1	207	72	89	49.5555
eeeee:::::ccclllc	chr11:2152605-2152812(-)$1	207	68	85	46.5555
eeeee:::::ccclllc	chr11:2152564-2152775(-)$1	211	31	48	46.5555
vvvvvvvvvvbb:::::	chr11:2152663-2152869(-)$1	206	51	68	49.5555

#DB
((((......((.(...	chr11:2153182-2153390(-)$1	1	80	97	49.5555
))))).....(((...)	chr11:2152595-2152805(-)$1	1	61	78	46.5555
((((......((.....	chr11:2152765-2152983(-)$1	1	107	124	49.5555
)))).............	chr11:2153241-2153446(-)$1	1	136	153	49.5555
((.((.....(((...)	chr11:2152588-2152795(-)$1	1	51	68	46.5555
(.((....)))).....	chr11:2153246-2153457(-)$1	1	147	164	49.5555
((((......((.....	chr11:2152845-2153051(-)$1	1	175	192	49.5555
(.((....)))).....	chr11:2153275-2153493(-)$1	1	183	200	49.5555
..........)).....	chr11:2152648-2152851(-)$1	1	33	50	49.5555
.).)).....((.....	chr11:2153014-2153237(-)$1	1	155	172	35.3333
(((..............	chr11:2152624-2152827(-)$1	1	9	26	49.5555
((((......((.....	chr11:2152669-2152876(-)$1	1	0	17	49.5555
(((((.....((.....	chr11:2152722-2152929(-)$1	1	53	70	49.5555
..........(((...)	chr11:2152562-2152764(-)$1	1	20	37	46.5555
(((((.....((.....	chr11:2152717-2152922(-)$1	1	46	63	49.5555
((.((.....(((...)	chr11:2152577-2152782(-)$1	1	38	55	46.5555
(.((....)))).....	chr11:2153209-2153417(-)$1	1	107	124	49.5555
((((......((.....	chr11:2152729-2152933(-)$1	1	57	74	49.5555
..........((.....	chr11:2152799-2153027(-)$1	1	151	168	49.5555
))))).....(((...)	chr11:2152612-2152816(-)$1	1	72	89	46.5555
..........((.....	chr11:2152616-2152818(-)$1	1	0	17	49.5555
..........)).....	chr11:2152657-2152861(-)$1	1	43	60	49.5555
).........((.(...	chr11:2153257-2153463(-)$1	1	153	170	49.5555
((((......((.....	chr11:2152703-2152909(-)$1	1	33	50	49.5555
(.((....)))).....	chr11:2153217-2153431(-)$1	1	121	138	49.5555
((((......((.....	chr11:2152758-2152965(-)$1	1	89	106	49.5555
((((......((.....	chr11:2152733-2152936(-)$1	1	60	77	49.5555
..........)).....	chr11:2152651-2152857(-)$1	1	39	56	49.5555
((((......((.....	chr11:2152736-2152940(-)$1	1	64	81	49.5555
..........((.....	chr11:2152619-2152824(-)$1	1	6	23	49.5555
..........((.....	chr11:2152864-2153095(-)$1	1	144	161	44.8888
((((......((.....	chr11:2152709-2152913(-)$1	1	37	54	49.5555
..........((.....	chr11:2152827-2153045(-)$1	1	169	186	49.5555
((((......((.(...	chr11:2153157-2153382(-)$1	1	72	89	49.5555
..........((.....	chr11:2152851-2153064(-)$1	1	188	205	49.5555
)))).............	chr11:2153232-2153441(-)$1	1	131	148	49.5555
..........(((((.(	chr11:2152541-2152749(-)$1	1	5	22	46.5555
))))).....(((...)	chr11:2152582-2152788(-)$1	1	44	61	46.5555
(.((....)))).....	chr11:2153200-2153409(-)$1	1	99	116	49.5555
(.((....)))).....	chr11:2153263-2153475(-)$1	1	165	182	49.5555
(((((.....((.....	chr11:2152698-2152903(-)$1	1	27	44	49.5555
(((((.....((.....	chr11:2152741-2152948(-)$1	1	72	89	49.5555
))))).....(((...)	chr11:2152605-2152812(-)$1	1	68	85	46.5555
))))).....(((...)	chr11:2152564-2152775(-)$1	1	31	48	46.5555
..........)).....	chr11:2152663-2152869(-)$1	1	51	68	49.5555

#PSSM
c : 0.80	C : 0.20	
a : 0.77	A : 0.20	g : 0.02	
u : 0.75	U : 0.20	a : 0.02	c : 0.02	
g : 0.80	G : 0.20	
a : 0.77	A : 0.20	c : 0.02	
a : 0.80	A : 0.20	
c : 0.80	C : 0.20	
a : 0.80	A : 0.20	
c : 0.80	C : 0.20	
a : 0.80	A : 0.20	
g : 0.80	G : 0.20	
c : 0.80	C : 0.20	
a : 0.80	U : 0.20	
c : 0.80	C : 0.20	
a : 0.80	A : 0.20	
c : 0.80	C : 0.20	
a : 0.80	A : 0.20	

#score	2184.111111111113
#seq	45
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_UTR_m2_run1.nuc.txt

#NT
CAAGCACGCCGUGUCCGAGGGCACCAAGGCGGUCACCAAGUACACCAGCUCGAAGUAAGA	chr1:149783334-149783576(-)$1	242	21	81	157.8571
CAAGCACGCCGUGUCCGAGGGCACCAAGGCGGUCACCAAGUACACCAGCUCCAAGUGAGU	chr1:149857649-149857870(-)$1	221	3	63	158.5714
UAAGCACGCCGUGUCAGAGGGCACCAAGGCCGUCACCAAGUACACCAGCUCUAAGUAAUU	chr6:26200100-26200304(+)$1	204	9	69	162.8571
UAAGCACGCCGUGUCAGAGGGCACCAAGGCCGUCACCAAGUACACCAGCUCUAAGUAAUU	chr6:26200104-26200315(+)$1	211	5	65	162.8571
UAAGCACGCCGUGUCAGAGGGCACCAAGGCCGUCACCAAGUACACCAGCUCUAAGUAAUU	chr6:26200092-26200300(+)$1	208	17	77	162.8571
CAAGCACGCCGUGUCCGAGGGCACCAAGGCCGUCACCAAGUACACCAGCGCUAAGUAAAC	chr6:27114050-27114338(-)$1	288	84	144	157.8571

#otherMatches

#Struct PSSM
::CCCKKCCC::DDDDbb[cccooooooccc]bb:EEEEE::::::eeeeennnnneeee	chr6:27861562-27861766(+)$1	204	1	61	155.7142
nnccc]ddddeeeeemmmmeeeee::::ccc[bb[bb!!ffffffa[ccclllccc22a]	chr1:149783334-149783576(-)$1	242	21	81	157.8571
FFFFFFddddeeeeemmmmeeeee333dddd:dddd!!cccooooooccc4444ddddee	chr1:149857649-149857870(-)$1	221	3	63	158.5714
:::ddddllldddd::bb[cccooooooccc]bb::::::::::HHHHHHHH::::::::	chr6:26200100-26200304(+)$1	204	9	69	162.8571
pppppppcccdddda[bb[cccooooooccc]bb55555a]ddddHHHHHHHHCCC::::	chr6:26200104-26200315(+)$1	211	5	65	162.8571
:::ddddllldddd::bb[cccooooooccc]bb::::::::::HHHHHHHH::ffffff	chr6:26200092-26200300(+)$1	208	17	77	162.8571
333ddddeeeeeggggggg&&&&&&&eeeee))))))))))dddddddd[dddd++++++	chr6:27114050-27114338(-)$1	288	84	144	157.8571

#DB
..(((..(((..((((((.(((......))).)).(((((......(((((.....))))	chr6:27861562-27861766(+)$1	1	1	61	155.7142
..))).))))(((((....)))))....(((.((.((..(((((((.(((...)))..).	chr1:149783334-149783576(-)$1	1	21	81	157.8571
(((((((((((((((....)))))...)))).((((..(((......)))....))))((	chr1:149857649-149857870(-)$1	1	3	63	158.5714
...((((...))))..((.(((......))).))..........))))))))........	chr6:26200100-26200304(+)$1	1	9	69	162.8571
.......)))(((((.((.(((......))).)).....).))))(((((((((((....	chr6:26200104-26200315(+)$1	1	5	65	162.8571
...((((...))))..((.(((......))).))..........))))))))..((((((	chr6:26200092-26200300(+)$1	1	17	77	162.8571
...)))))))))(((((((.......(((((..........((((((((.((((......	chr6:27114050-27114338(-)$1	1	84	144	157.8571

#PSSM
C : 0.57	U : 0.42	
A : 0.99	
A : 0.99	
G : 0.99	
C : 0.99	
A : 0.99	
C : 0.99	
G : 0.99	
C : 0.99	
C : 0.99	
G : 0.99	
U : 0.99	
G : 0.99	
U : 0.99	
C : 0.99	
C : 0.57	A : 0.42	
G : 0.99	
A : 0.99	
G : 0.99	
G : 0.99	
G : 0.99	
C : 0.99	
A : 0.99	
C : 0.99	
C : 0.85	A : 0.14	
A : 0.99	
A : 0.99	
G : 0.99	
G : 0.99	
C : 0.99	
C : 0.71	G : 0.28	
G : 0.99	
U : 0.99	
C : 0.99	
A : 0.99	
C : 0.99	
C : 0.99	
A : 0.99	
A : 0.99	
G : 0.99	
U : 0.99	
A : 0.99	
C : 0.99	
A : 0.99	
C : 0.99	
C : 0.99	
A : 0.99	
G : 0.99	
C : 0.99	
U : 0.85	G : 0.14	
C : 0.99	
U : 0.57	C : 0.28	G : 0.14	
A : 0.99	
A : 0.99	
G : 0.99	
U : 0.99	
A : 0.71	G : 0.28	
A : 0.99	
G : 0.42	U : 0.42	A : 0.14	
U : 0.57	C : 0.28	A : 0.14	

#score	1118.5714285714287
#seq	7
#width	60
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_UTR_m3_run2.nuc.txt

#NT
UGU	chr16:84813109-84813373(+)$1	264	120	123	9.0000
ugu	chr1:173901213-173901460(-)$1	247	67	70	9.0000
UGU	chr6:43753543-43753784(+)$1	241	94	97	9.0000
UGU	chr6:17615427-17615653(-)$1	226	0	3	9.0000
UGU	chr20:5525565-5525823(-)$1	258	37	40	9.0000
UGU	chr16:31202782-31203001(+)$1	219	11	14	9.0000
UGU	chr8:30040832-30041111(+)$1	279	9	12	9.0000
UGU	chr15:34817535-34817819(-)$1	284	11	14	9.0000
UGU	chr11:9160826-9161080(-)$1	254	60	63	9.0000
UGU	chrX:153671437-153671682(+)$1	245	44	47	9.0000
UGU	chr22:38879531-38879788(-)$1	257	55	58	9.0000
UGU	chr17:79876227-79876518(-)$1	291	50	53	9.0000
ugu	chr15:50852512-50852743(-)$1	231	18	21	9.0000
UGU	chr1:145442432-145442687(+)$1	255	49	52	9.0000
UGU	chr7:139107815-139108076(+)$1	261	0	3	9.0000
UGU	chr8:128753342-128753597(+)$1	255	73	76	9.0000
UGU	chr16:1821067-1821334(-)$1	267	85	88	9.0000
UGU	chr7:140033502-140033794(-)$1	292	38	41	9.0000
UGU	chr17:49039540-49039882(-)$1	342	15	18	9.0000
UGU	chr20:57253618-57253899(+)$1	281	96	99	9.0000
UGU	chrX:41206870-41207127(+)$1	257	153	156	9.0000
UGU	chr3:179342039-179342296(+)$1	257	4	7	9.0000
UGU	chr1:71528898-71529143(-)$1	245	57	60	9.0000
UGU	chr4:123283613-123283891(+)$1	278	15	18	9.0000
UGU	chr1:203823037-203823282(+)$1	245	51	54	9.0000
UGU	chr1:21069362-21069654(-)$1	292	167	170	9.0000
UGU	chr15:34671226-34671540(-)$1	314	12	15	9.0000
UGU	chr6:24705047-24705288(-)$1	241	96	99	9.0000
UGu	chr1:6695418-6695701(-)$1	283	55	58	9.0000
UGU	chr6:64290942-64291196(+)$1	254	9	12	9.0000
UGU	chr17:80445816-80446079(+)$1	263	69	72	9.0000
UGU	chr7:77269180-77269445(+)$1	265	15	18	9.0000
UGU	chr1:40026462-40026687(-)$1	225	8	11	9.0000
UGU	chr3:186507216-186507469(+)$1	253	5	8	9.0000
UGU	chr11:61640971-61641237(-)$1	266	76	79	9.0000
UGU	chr1:1321835-1322078(-)$1	243	39	42	9.0000
UGU	chr15:91463422-91463637(+)$1	215	21	24	9.0000
UGU	chr2:74689755-74690006(-)$1	251	92	95	9.0000
UGU	chr7:131181123-131181385(+)$1	262	3	6	9.0000
UGU	chr9:96327820-96328119(+)$1	299	60	63	9.0000
UGU	chr3:128198227-128198505(-)$1	278	36	39	9.0000
UGU	chr22:45737114-45737353(+)$1	239	32	35	9.0000
ugu	chr19:36729371-36729612(+)$1	241	48	51	9.0000
UGU	chr13:107195708-107195982(-)$1	274	128	131	9.0000
UGU	chr13:28867447-28867740(+)$1	293	19	22	9.0000
UGU	chr1:203838996-203839289(+)$1	293	0	3	9.0000
UGU	chr1:203821357-203821609(+)$1	252	40	43	9.0000
UGU	chr1:12570070-12570308(+)$1	238	216	219	9.0000
ugu	chr1:27181256-27181524(+)$1	268	74	77	9.0000
UGU	chr2:32843202-32843451(+)$1	249	6	9	9.0000
UGU	chr11:65359645-65359913(+)$1	268	230	233	9.0000
UGU	chr12:57106188-57106437(-)$1	249	28	31	9.0000
UGU	chr8:21939816-21940071(+)$1	255	78	81	9.0000
UGU	chr5:130977826-130978071(-)$1	245	26	29	9.0000
UGU	chr5:179263881-179264228(+)$1	347	48	51	9.0000
UGU	chr17:79524236-79524496(-)$1	260	29	32	9.0000
UGU	chr19:12811285-12811561(-)$1	276	18	21	9.0000
UGU	chr2:55199428-55199689(-)$1	261	34	37	9.0000
UGU	chr1:154243159-154243401(+)$1	242	52	55	9.0000
UGU	chr1:111727384-111727659(+)$1	275	9	12	9.0000
UGU	chr1:70716883-70717233(+)$1	350	6	9	9.0000
UGU	chr2:182795166-182795432(+)$1	266	10	13	9.0000
UGU	chr11:61567343-61567571(-)$1	228	2	5	9.0000
UGU	chr17:25640240-25640472(+)$1	232	36	39	9.0000
UGU	chr7:128411251-128411493(+)$1	242	156	159	9.0000
UGU	chr6:35801143-35801436(-)$1	293	45	48	9.0000
UGU	chr17:45700015-45700305(+)$1	290	187	190	9.0000
UGU	chr17:38328230-38328499(+)$1	269	11	14	9.0000
UGU	chr2:150426077-150426442(-)$1	365	17	20	9.0000
UGU	chr15:34672780-34673022(-)$1	242	78	81	9.0000
UGU	chr18:43666027-43666314(-)$1	287	39	42	9.0000
UGU	chr3:156865533-156865811(-)$1	278	10	13	9.0000
UGU	chr5:176728407-176728672(-)$1	265	13	16	9.0000
UGU	chr19:34890703-34890930(+)$1	227	24	27	9.0000
UGU	chr1:160186476-160186715(-)$1	239	100	103	9.0000
UGU	chr21:47610644-47610931(-)$1	287	37	40	9.0000
UGU	chr22:32353304-32353614(+)$1	310	81	84	9.0000
UGU	chr5:167946001-167946269(+)$1	268	105	108	9.0000
UGU	chr22:20098966-20099220(+)$1	254	15	18	9.0000
UGU	chr6:43473868-43474163(+)$1	295	148	151	9.0000
UGU	chr11:14479018-14479290(-)$1	272	95	98	9.0000
UGU	chr16:2821164-2821414(+)$1	250	18	21	9.0000
ugu	chr10:1086001-1086281(-)$1	280	2	5	9.0000
UGU	chr9:33281199-33281478(+)$1	279	42	45	9.0000
ugu	chr21:46189133-46189394(-)$1	261	75	78	9.0000
UGU	chr7:12370439-12370691(-)$1	252	32	35	9.0000
UGU	chr7:151831975-151832237(-)$1	262	3	6	9.0000
UGU	chr5:176946705-176946947(-)$1	242	49	52	9.0000
UGU	chr1:205052518-205052852(-)$1	334	122	125	9.0000
UGU	chr16:31202619-31202840(+)$1	221	174	177	9.0000
UGU	chr1:153902130-153902373(-)$1	243	76	79	9.0000
UGU	chr12:116396584-116396834(-)$1	250	113	116	9.0000
UGU	chr1:900619-900936(+)$1	317	60	63	9.0000
UGU	chr5:138665643-138665922(+)$1	279	31	34	9.0000
UGU	chr3:128889111-128889370(-)$1	259	12	15	9.0000
UGU	chr22:20098932-20099166(+)$1	234	28	31	9.0000
UGU	chr5:180682122-180682401(-)$1	279	10	13	9.0000
UGU	chr2:97525465-97525716(-)$1	251	51	54	9.0000
UGU	chrX:47045922-47046212(+)$1	290	102	105	9.0000

#otherMatches

#Struct PSSM
mmm	chr20:3018778-3019107(+)$1	329	46	49	9.0000
eee	chr16:84813109-84813373(+)$1	264	120	123	9.0000
ddd	chr1:173901213-173901460(-)$1	247	67	70	9.0000
[cc	chr6:43753543-43753784(+)$1	241	94	97	9.0000
:::	chr6:17615427-17615653(-)$1	226	0	3	9.0000
b]a	chr20:5525565-5525823(-)$1	258	37	40	9.0000
II{	chr16:31202782-31203001(+)$1	219	11	14	9.0000
:::	chr8:30040832-30041111(+)$1	279	9	12	9.0000
sss	chr15:34817535-34817819(-)$1	284	11	14	9.0000
ddd	chr11:9160826-9161080(-)$1	254	60	63	9.0000
{A{	chrX:153671437-153671682(+)$1	245	44	47	9.0000
ccc	chr22:38879531-38879788(-)$1	257	55	58	9.0000
:::	chr17:79876227-79876518(-)$1	291	50	53	9.0000
iii	chr15:50852512-50852743(-)$1	231	18	21	9.0000
cmm	chr1:145442432-145442687(+)$1	255	49	52	9.0000
:DD	chr7:139107815-139108076(+)$1	261	0	3	9.0000
III	chr8:128753342-128753597(+)$1	255	73	76	9.0000
LLL	chr16:1821067-1821334(-)$1	267	85	88	9.0000
ee[	chr7:140033502-140033794(-)$1	292	38	41	9.0000
(((	chr17:49039540-49039882(-)$1	342	15	18	9.0000
:::	chr20:57253618-57253899(+)$1	281	96	99	9.0000
eee	chrX:41206870-41207127(+)$1	257	153	156	9.0000
III	chr3:179342039-179342296(+)$1	257	4	7	9.0000
ff7	chr1:71528898-71529143(-)$1	245	57	60	9.0000
OOC	chr4:123283613-123283891(+)$1	278	15	18	9.0000
E{E	chr1:203823037-203823282(+)$1	245	51	54	9.0000
ccc	chr1:21069362-21069654(-)$1	292	167	170	9.0000
eee	chr15:34671226-34671540(-)$1	314	12	15	9.0000
hvv	chr6:24705047-24705288(-)$1	241	96	99	9.0000
fff	chr1:6695418-6695701(-)$1	283	55	58	9.0000
FFF	chr6:64290942-64291196(+)$1	254	9	12	9.0000
ddd	chr17:80445816-80446079(+)$1	263	69	72	9.0000
NNN	chr7:77269180-77269445(+)$1	265	15	18	9.0000
cc[	chr1:40026462-40026687(-)$1	225	8	11	9.0000
"""	chr3:186507216-186507469(+)$1	253	5	8	9.0000
:::	chr11:61640971-61641237(-)$1	266	76	79	9.0000
:JJ	chr1:1321835-1322078(-)$1	243	39	42	9.0000
c]c	chr15:91463422-91463637(+)$1	215	21	24	9.0000
f::	chr2:74689755-74690006(-)$1	251	92	95	9.0000
DDI	chr7:131181123-131181385(+)$1	262	3	6	9.0000
hhh	chr9:96327820-96328119(+)$1	299	60	63	9.0000
FFF	chr3:128198227-128198505(-)$1	278	36	39	9.0000
ffo	chr22:45737114-45737353(+)$1	239	32	35	9.0000
HHH	chr19:36729371-36729612(+)$1	241	48	51	9.0000
h::	chr13:107195708-107195982(-)$1	274	128	131	9.0000
ff[	chr13:28867447-28867740(+)$1	293	19	22	9.0000
a[d	chr1:203838996-203839289(+)$1	293	0	3	9.0000
ndd	chr1:203821357-203821609(+)$1	252	40	43	9.0000
g::	chr1:12570070-12570308(+)$1	238	216	219	9.0000
III	chr1:27181256-27181524(+)$1	268	74	77	9.0000
BB{	chr2:32843202-32843451(+)$1	249	6	9	9.0000
]a2	chr11:65359645-65359913(+)$1	268	230	233	9.0000
:::	chr12:57106188-57106437(-)$1	249	28	31	9.0000
eee	chr8:21939816-21940071(+)$1	255	78	81	9.0000
ooo	chr5:130977826-130978071(-)$1	245	26	29	9.0000
hhh	chr5:179263881-179264228(+)$1	347	48	51	9.0000
LCC	chr17:79524236-79524496(-)$1	260	29	32	9.0000
J{A	chr19:12811285-12811561(-)$1	276	18	21	9.0000
mmm	chr2:55199428-55199689(-)$1	261	34	37	9.0000
DDD	chr1:154243159-154243401(+)$1	242	52	55	9.0000
JJJ	chr1:111727384-111727659(+)$1	275	9	12	9.0000
:FF	chr1:70716883-70717233(+)$1	350	6	9	9.0000
lhh	chr2:182795166-182795432(+)$1	266	10	13	9.0000
EEE	chr11:61567343-61567571(-)$1	228	2	5	9.0000
===	chr17:25640240-25640472(+)$1	232	36	39	9.0000
ddd	chr7:128411251-128411493(+)$1	242	156	159	9.0000
LII	chr6:35801143-35801436(-)$1	293	45	48	9.0000
ee[	chr17:45700015-45700305(+)$1	290	187	190	9.0000
EEE	chr17:38328230-38328499(+)$1	269	11	14	9.0000
LEE	chr2:150426077-150426442(-)$1	365	17	20	9.0000
:dd	chr15:34672780-34673022(-)$1	242	78	81	9.0000
]dd	chr18:43666027-43666314(-)$1	287	39	42	9.0000
hhh	chr3:156865533-156865811(-)$1	278	10	13	9.0000
ooo	chr5:176728407-176728672(-)$1	265	13	16	9.0000
ddd	chr19:34890703-34890930(+)$1	227	24	27	9.0000
fff	chr1:160186476-160186715(-)$1	239	100	103	9.0000
emm	chr21:47610644-47610931(-)$1	287	37	40	9.0000
hhh	chr22:32353304-32353614(+)$1	310	81	84	9.0000
:ee	chr5:167946001-167946269(+)$1	268	105	108	9.0000
mii	chr22:20098966-20099220(+)$1	254	15	18	9.0000
dd!	chr6:43473868-43474163(+)$1	295	148	151	9.0000
ODD	chr11:14479018-14479290(-)$1	272	95	98	9.0000
dqq	chr16:2821164-2821414(+)$1	250	18	21	9.0000
::E	chr10:1086001-1086281(-)$1	280	2	5	9.0000
ddd	chr9:33281199-33281478(+)$1	279	42	45	9.0000
ggg	chr21:46189133-46189394(-)$1	261	75	78	9.0000
ggg	chr7:12370439-12370691(-)$1	252	32	35	9.0000
DDD	chr7:151831975-151832237(-)$1	262	3	6	9.0000
JJJ	chr5:176946705-176946947(-)$1	242	49	52	9.0000
fff	chr1:205052518-205052852(-)$1	334	122	125	9.0000
G}A	chr16:31202619-31202840(+)$1	221	174	177	9.0000
dd2	chr1:153902130-153902373(-)$1	243	76	79	9.0000
llc	chr12:116396584-116396834(-)$1	250	113	116	9.0000
c[d	chr1:900619-900936(+)$1	317	60	63	9.0000
fff	chr5:138665643-138665922(+)$1	279	31	34	9.0000
:DD	chr3:128889111-128889370(-)$1	259	12	15	9.0000
ppp	chr22:20098932-20099166(+)$1	234	28	31	9.0000
iii	chr5:180682122-180682401(-)$1	279	10	13	9.0000
h[d	chr2:97525465-97525716(-)$1	251	51	54	9.0000
NFF	chrX:47045922-47046212(+)$1	290	102	105	9.0000

#DB
...	chr20:3018778-3019107(+)$1	1	46	49	9.0000
(((	chr16:84813109-84813373(+)$1	1	120	123	9.0000
(((	chr1:173901213-173901460(-)$1	1	67	70	9.0000
.((	chr6:43753543-43753784(+)$1	1	94	97	9.0000
...	chr6:17615427-17615653(-)$1	1	0	3	9.0000
).)	chr20:5525565-5525823(-)$1	1	37	40	9.0000
((.	chr16:31202782-31203001(+)$1	1	11	14	9.0000
...	chr8:30040832-30041111(+)$1	1	9	12	9.0000
...	chr15:34817535-34817819(-)$1	1	11	14	9.0000
)))	chr11:9160826-9161080(-)$1	1	60	63	9.0000
.(.	chrX:153671437-153671682(+)$1	1	44	47	9.0000
(((	chr22:38879531-38879788(-)$1	1	55	58	9.0000
...	chr17:79876227-79876518(-)$1	1	50	53	9.0000
(((	chr15:50852512-50852743(-)$1	1	18	21	9.0000
(..	chr1:145442432-145442687(+)$1	1	49	52	9.0000
.((	chr7:139107815-139108076(+)$1	1	0	3	9.0000
(((	chr8:128753342-128753597(+)$1	1	73	76	9.0000
...	chr16:1821067-1821334(-)$1	1	85	88	9.0000
((.	chr7:140033502-140033794(-)$1	1	38	41	9.0000
...	chr17:49039540-49039882(-)$1	1	15	18	9.0000
...	chr20:57253618-57253899(+)$1	1	96	99	9.0000
)))	chrX:41206870-41207127(+)$1	1	153	156	9.0000
(((	chr3:179342039-179342296(+)$1	1	4	7	9.0000
)).	chr1:71528898-71529143(-)$1	1	57	60	9.0000
..(	chr4:123283613-123283891(+)$1	1	15	18	9.0000
(.(	chr1:203823037-203823282(+)$1	1	51	54	9.0000
(((	chr1:21069362-21069654(-)$1	1	167	170	9.0000
(((	chr15:34671226-34671540(-)$1	1	12	15	9.0000
(..	chr6:24705047-24705288(-)$1	1	96	99	9.0000
)))	chr1:6695418-6695701(-)$1	1	55	58	9.0000
(((	chr6:64290942-64291196(+)$1	1	9	12	9.0000
)))	chr17:80445816-80446079(+)$1	1	69	72	9.0000
...	chr7:77269180-77269445(+)$1	1	15	18	9.0000
((.	chr1:40026462-40026687(-)$1	1	8	11	9.0000
...	chr3:186507216-186507469(+)$1	1	5	8	9.0000
...	chr11:61640971-61641237(-)$1	1	76	79	9.0000
.((	chr1:1321835-1322078(-)$1	1	39	42	9.0000
).)	chr15:91463422-91463637(+)$1	1	21	24	9.0000
)..	chr2:74689755-74690006(-)$1	1	92	95	9.0000
(((	chr7:131181123-131181385(+)$1	1	3	6	9.0000
(((	chr9:96327820-96328119(+)$1	1	60	63	9.0000
(((	chr3:128198227-128198505(-)$1	1	36	39	9.0000
((.	chr22:45737114-45737353(+)$1	1	32	35	9.0000
(((	chr19:36729371-36729612(+)$1	1	48	51	9.0000
)..	chr13:107195708-107195982(-)$1	1	128	131	9.0000
((.	chr13:28867447-28867740(+)$1	1	19	22	9.0000
(.(	chr1:203838996-203839289(+)$1	1	0	3	9.0000
.))	chr1:203821357-203821609(+)$1	1	40	43	9.0000
)..	chr1:12570070-12570308(+)$1	1	216	219	9.0000
(((	chr1:27181256-27181524(+)$1	1	74	77	9.0000
((.	chr2:32843202-32843451(+)$1	1	6	9	9.0000
.).	chr11:65359645-65359913(+)$1	1	230	233	9.0000
...	chr12:57106188-57106437(-)$1	1	28	31	9.0000
(((	chr8:21939816-21940071(+)$1	1	78	81	9.0000
...	chr5:130977826-130978071(-)$1	1	26	29	9.0000
(((	chr5:179263881-179264228(+)$1	1	48	51	9.0000
.((	chr17:79524236-79524496(-)$1	1	29	32	9.0000
(.(	chr19:12811285-12811561(-)$1	1	18	21	9.0000
...	chr2:55199428-55199689(-)$1	1	34	37	9.0000
(((	chr1:154243159-154243401(+)$1	1	52	55	9.0000
(((	chr1:111727384-111727659(+)$1	1	9	12	9.0000
.((	chr1:70716883-70717233(+)$1	1	6	9	9.0000
.))	chr2:182795166-182795432(+)$1	1	10	13	9.0000
(((	chr11:61567343-61567571(-)$1	1	2	5	9.0000
)))	chr17:25640240-25640472(+)$1	1	36	39	9.0000
)))	chr7:128411251-128411493(+)$1	1	156	159	9.0000
.((	chr6:35801143-35801436(-)$1	1	45	48	9.0000
((.	chr17:45700015-45700305(+)$1	1	187	190	9.0000
(((	chr17:38328230-38328499(+)$1	1	11	14	9.0000
.((	chr2:150426077-150426442(-)$1	1	17	20	9.0000
.((	chr15:34672780-34673022(-)$1	1	78	81	9.0000
.))	chr18:43666027-43666314(-)$1	1	39	42	9.0000
(((	chr3:156865533-156865811(-)$1	1	10	13	9.0000
...	chr5:176728407-176728672(-)$1	1	13	16	9.0000
(((	chr19:34890703-34890930(+)$1	1	24	27	9.0000
(((	chr1:160186476-160186715(-)$1	1	100	103	9.0000
(..	chr21:47610644-47610931(-)$1	1	37	40	9.0000
(((	chr22:32353304-32353614(+)$1	1	81	84	9.0000
.((	chr5:167946001-167946269(+)$1	1	105	108	9.0000
.))	chr22:20098966-20099220(+)$1	1	15	18	9.0000
((.	chr6:43473868-43474163(+)$1	1	148	151	9.0000
.((	chr11:14479018-14479290(-)$1	1	95	98	9.0000
(..	chr16:2821164-2821414(+)$1	1	18	21	9.0000
..(	chr10:1086001-1086281(-)$1	1	2	5	9.0000
(((	chr9:33281199-33281478(+)$1	1	42	45	9.0000
)))	chr21:46189133-46189394(-)$1	1	75	78	9.0000
(((	chr7:12370439-12370691(-)$1	1	32	35	9.0000
(((	chr7:151831975-151832237(-)$1	1	3	6	9.0000
(((	chr5:176946705-176946947(-)$1	1	49	52	9.0000
(((	chr1:205052518-205052852(-)$1	1	122	125	9.0000
).)	chr16:31202619-31202840(+)$1	1	174	177	9.0000
)).	chr1:153902130-153902373(-)$1	1	76	79	9.0000
..)	chr12:116396584-116396834(-)$1	1	113	116	9.0000
(.(	chr1:900619-900936(+)$1	1	60	63	9.0000
(((	chr5:138665643-138665922(+)$1	1	31	34	9.0000
.((	chr3:128889111-128889370(-)$1	1	12	15	9.0000
...	chr22:20098932-20099166(+)$1	1	28	31	9.0000
(((	chr5:180682122-180682401(-)$1	1	10	13	9.0000
(.(	chr2:97525465-97525716(-)$1	1	51	54	9.0000
.((	chrX:47045922-47046212(+)$1	1	102	105	9.0000

#PSSM
U : 0.94	u : 0.06	
G : 0.94	g : 0.06	
U : 0.93	u : 0.07	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_transcript_m3_run2.nuc.txt

#NT
GGCCGGG	chr5:74162271-74162520(-)$1	249	83	90	17.7948
ggccggg	chr8:145687972-145688295(-)$1	323	113	120	17.7948
GGCCAGG	chr17:79825821-79826061(+)$1	240	38	45	18.0512
GGCCAGG	chr16:89969266-89969519(+)$1	253	126	133	18.0512
GGCCGGG	chr22:44319961-44320254(+)$1	293	68	75	17.7948
ggccugg	chr20:57267737-57268015(+)$1	278	22	29	16.8974
GGCCUGG	chr20:31048887-31049154(-)$1	267	134	141	16.8974
GGCCAGG	chr14:105338960-105339232(+)$1	272	182	189	18.0512
GGCCGGG	chr14:105261511-105261787(-)$1	276	16	23	17.7948
GGCCGGG	chr17:79973114-79973347(+)$1	233	112	119	17.7948
GGCCGGG	chr17:79961702-79961988(+)$1	286	23	30	17.7948
GGCCCGG	chr2:178129075-178129317(-)$1	242	124	131	16.2564
GGCCGGG	chr19:2447960-2448222(-)$1	262	123	130	17.7948
ggccggg	chr20:17661931-17662175(-)$1	244	114	121	17.7948
GGCCUGG	chr5:34192265-34192491(-)$1	226	29	36	16.8974
ggccagg	chr12:7037018-7037356(+)$1	338	257	264	18.0512
GGCCGGG	chr9:139716418-139716762(+)$1	344	177	184	17.7948
GGCCGGG	chr11:1595883-1596162(+)$1	279	58	65	17.7948
GGCCGGG	chr16:88555776-88556046(+)$1	270	163	170	17.7948
GGCCAGG	chr17:59474511-59474763(-)$1	252	177	184	18.0512
ggccagg	chr2:20423850-20424122(-)$1	272	102	109	18.0512
GGCCAGG	chr14:105255327-105255559(-)$1	232	32	39	18.0512
ggccagg	chr7:106809926-106810214(+)$1	288	17	24	18.0512
GGCCUGG	chr8:145013668-145013925(-)$1	257	82	89	16.8974
GGCCGGG	chr22:50739869-50740121(-)$1	252	139	146	17.7948
GGCCUGG	chr16:593290-593540(+)$1	250	48	55	16.8974
GGCCAGG	chr8:144586779-144587057(-)$1	278	164	171	18.0512
GGCCAGG	chr9:136711540-136711775(-)$1	235	82	89	18.0512
ggcccgg	chr8:145687775-145688071(-)$1	296	64	71	16.2564
GGCCAGG	chr17:79958882-79959172(+)$1	290	261	268	18.0512
GGCCGGG	chr7:5460419-5460676(-)$1	257	40	47	17.7948
GGCCAGG	chr7:1578021-1578257(+)$1	236	59	66	18.0512
GGCCGGG	chr17:79961611-79961858(+)$1	247	114	121	17.7948
GGCCUGG	chr22:50731654-50731895(-)$1	241	2	9	16.8974
GGCCAGG	chr11:842825-843110(+)$1	285	120	127	18.0512
GGCCAGG	chr2:242503878-242504128(+)$1	250	11	18	18.0512
GGCCAGG	chr16:89967275-89967529(+)$1	254	3	10	18.0512
ggccagg	chr7:106809825-106810078(+)$1	253	71	78	18.0512

#otherMatches

#Struct PSSM
DDDDLLL	chr11:65325159-65325437(-)$1	278	34	41	16.8974
:EEEEE{	chr5:74162271-74162520(-)$1	249	83	90	17.7948
e[bb[a!	chr8:145687972-145688295(-)$1	323	113	120	17.7948
::dddd[	chr17:79825821-79826061(+)$1	240	38	45	18.0512
mmmmeee	chr16:89969266-89969519(+)$1	253	126	133	18.0512
::EEEEE	chr22:44319961-44320254(+)$1	293	68	75	17.7948
JJJJJJJ	chr20:57267737-57268015(+)$1	278	22	29	16.8974
fffffll	chr20:31048887-31049154(-)$1	267	134	141	16.8974
ggggggg	chr14:105338960-105339232(+)$1	272	182	189	18.0512
b[ccchh	chr14:105261511-105261787(-)$1	276	16	23	17.7948
cc333ii	chr17:79973114-79973347(+)$1	233	112	119	17.7948
ff]eeee	chr17:79961702-79961988(+)$1	286	23	30	17.7948
eeebbnn	chr2:178129075-178129317(-)$1	242	124	131	16.2564
ccc[a[e	chr19:2447960-2448222(-)$1	262	123	130	17.7948
iiiii]d	chr20:17661931-17662175(-)$1	244	114	121	17.7948
eeeee]a	chr5:34192265-34192491(-)$1	226	29	36	16.8974
[cccppp	chr12:7037018-7037356(+)$1	338	257	264	18.0512
iifffff	chr9:139716418-139716762(+)$1	344	177	184	17.7948
GGGGGGG	chr11:1595883-1596162(+)$1	279	58	65	17.7948
fff$$$$	chr16:88555776-88556046(+)$1	270	163	170	17.7948
ffff::e	chr17:59474511-59474763(-)$1	252	177	184	18.0512
hhhhh:H	chr2:20423850-20424122(-)$1	272	102	109	18.0512
hbbHHHH	chr14:105255327-105255559(-)$1	232	32	39	18.0512
C{DDDD{	chr7:106809926-106810214(+)$1	288	17	24	18.0512
mccc]cc	chr8:145013668-145013925(-)$1	257	82	89	16.8974
eeeemmm	chr22:50739869-50740121(-)$1	252	139	146	17.7948
iiiiiii	chr16:593290-593540(+)$1	250	48	55	16.8974
44ccc]d	chr8:144586779-144587057(-)$1	278	164	171	18.0512
iiiiiii	chr9:136711540-136711775(-)$1	235	82	89	18.0512
ggggBB{	chr8:145687775-145688071(-)$1	296	64	71	16.2564
cchhhhh	chr17:79958882-79959172(+)$1	290	261	268	18.0512
hhhhh[a	chr7:5460419-5460676(-)$1	257	40	47	17.7948
eeemmmm	chr7:1578021-1578257(+)$1	236	59	66	18.0512
ff]hhhh	chr17:79961611-79961858(+)$1	247	114	121	17.7948
eee!!bb	chr22:50731654-50731895(-)$1	241	2	9	16.8974
fffff[a	chr11:842825-843110(+)$1	285	120	127	18.0512
dddd[dd	chr2:242503878-242504128(+)$1	250	11	18	18.0512
::BBKKB	chr16:89967275-89967529(+)$1	254	3	10	18.0512
dddd[ff	chr7:106809825-106810078(+)$1	253	71	78	18.0512

#DB
((((...	chr11:65325159-65325437(-)$1	1	34	41	16.8974
.(((((.	chr5:74162271-74162520(-)$1	1	83	90	17.7948
(.((.(.	chr8:145687972-145688295(-)$1	1	113	120	17.7948
..((((.	chr17:79825821-79826061(+)$1	1	38	45	18.0512
....)))	chr16:89969266-89969519(+)$1	1	126	133	18.0512
..)))))	chr22:44319961-44320254(+)$1	1	68	75	17.7948
(((((((	chr20:57267737-57268015(+)$1	1	22	29	16.8974
(((((..	chr20:31048887-31049154(-)$1	1	134	141	16.8974
)))))))	chr14:105338960-105339232(+)$1	1	182	189	18.0512
(.(((((	chr14:105261511-105261787(-)$1	1	16	23	17.7948
))...))	chr17:79973114-79973347(+)$1	1	112	119	17.7948
)).))))	chr17:79961702-79961988(+)$1	1	23	30	17.7948
(((((..	chr2:178129075-178129317(-)$1	1	124	131	16.2564
(((.(.(	chr19:2447960-2448222(-)$1	1	123	130	17.7948
))))).)	chr20:17661931-17662175(-)$1	1	114	121	17.7948
))))).)	chr5:34192265-34192491(-)$1	1	29	36	16.8974
.(((...	chr12:7037018-7037356(+)$1	1	257	264	18.0512
))(((((	chr9:139716418-139716762(+)$1	1	177	184	17.7948
(((((((	chr11:1595883-1596162(+)$1	1	58	65	17.7948
(((....	chr16:88555776-88556046(+)$1	1	163	170	17.7948
))))..(	chr17:59474511-59474763(-)$1	1	177	184	18.0512
))))).)	chr2:20423850-20424122(-)$1	1	102	109	18.0512
)))((((	chr14:105255327-105255559(-)$1	1	32	39	18.0512
(.((((.	chr7:106809926-106810214(+)$1	1	17	24	18.0512
.))).))	chr8:145013668-145013925(-)$1	1	82	89	16.8974
((((...	chr22:50739869-50740121(-)$1	1	139	146	17.7948
)))))))	chr16:593290-593540(+)$1	1	48	55	16.8974
..))).)	chr8:144586779-144587057(-)$1	1	164	171	18.0512
(((((((	chr9:136711540-136711775(-)$1	1	82	89	18.0512
))))((.	chr8:145687775-145688071(-)$1	1	64	71	16.2564
(((((((	chr17:79958882-79959172(+)$1	1	261	268	18.0512
(((((.(	chr7:5460419-5460676(-)$1	1	40	47	17.7948
(((....	chr7:1578021-1578257(+)$1	1	59	66	18.0512
)).))))	chr17:79961611-79961858(+)$1	1	114	121	17.7948
(((..((	chr22:50731654-50731895(-)$1	1	2	9	16.8974
(((((.(	chr11:842825-843110(+)$1	1	120	127	18.0512
((((.((	chr2:242503878-242504128(+)$1	1	11	18	18.0512
..((..(	chr16:89967275-89967529(+)$1	1	3	10	18.0512
((((.((	chr7:106809825-106810078(+)$1	1	71	78	18.0512

#PSSM
G : 0.79	g : 0.20	
G : 0.79	g : 0.20	
C : 0.79	c : 0.20	
C : 0.79	c : 0.20	
G : 0.30	A : 0.30	U : 0.15	a : 0.10	g : 0.05	u : 0.02	C : 0.02	c : 0.02	
G : 0.79	g : 0.20	
G : 0.79	g : 0.20	

#score	688.7435897435903
#seq	39
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_UTR_m2_run2.nuc.txt

#NT
UUAUUU	chr6:33384025-33384276(+)$1	251	67	73	18.0000
UUAUUU	chr20:60757268-60757532(+)$1	264	147	153	18.0000
UUAUUU	chr12:56366276-56366543(+)$1	267	241	247	18.0000
UUAUUU	chr2:153511961-153512232(-)$1	271	29	35	18.0000
UUAUUU	chr2:53897273-53897651(-)$1	378	286	292	18.0000
UUAUUU	chr2:99216781-99217089(-)$1	308	67	73	18.0000
UUAUUU	chr1:42642168-42642460(-)$1	292	128	134	18.0000
UUAUUU	chr1:234741747-234742011(-)$1	264	30	36	18.0000
UUAUUU	chr1:213165731-213166035(-)$1	304	60	66	18.0000
UUAUUU	chr4:39825884-39826169(-)$1	285	102	108	18.0000
UUAUUU	chr2:55200014-55200259(-)$1	245	93	99	18.0000
UUAUUU	chr1:226418840-226419096(-)$1	256	56	62	18.0000
UUAUUU	chr15:34819538-34819779(-)$1	241	60	66	18.0000
UUAUUU	chr18:211216-211508(+)$1	292	108	114	18.0000
UUAUUU	chr10:76990891-76991198(+)$1	307	74	80	18.0000
UUAUUU	chr16:75611435-75611717(+)$1	282	12	18	18.0000
UUAUUU	chr15:50852454-50852712(-)$1	258	13	19	18.0000
UUAUUU	chr3:156865697-156865951(-)$1	254	220	226	18.0000
UUAUUU	chr12:133346277-133346526(-)$1	249	97	103	18.0000
uuauuu	chr7:914350-914582(+)$1	232	37	43	18.0000
UUAUUU	chr7:23544953-23545221(-)$1	268	161	167	18.0000
UUAUUU	chr13:107195708-107195982(-)$1	274	226	232	18.0000
UUAUUU	chr10:103546060-103546381(-)$1	321	3	9	18.0000
UUAUUU	chr3:39137793-39138041(+)$1	248	100	106	18.0000
UUAUUU	chr8:20078051-20078348(+)$1	297	164	170	18.0000
UUAUUU	chr10:124924661-124924962(+)$1	301	181	187	18.0000
UUAUUU	chr2:191798235-191798476(+)$1	241	167	173	18.0000
UUAUUU	chr2:10194036-10194323(+)$1	287	44	50	18.0000
UUAUUU	chr3:128889111-128889370(-)$1	259	75	81	18.0000
UUAUUU	chr9:127998465-127998707(-)$1	242	175	181	18.0000
UUAUUU	chr12:46752184-46752510(-)$1	326	271	277	18.0000
UUAUUU	chr4:83345729-83345980(-)$1	251	13	19	18.0000
UUAUUU	chr2:61705015-61705309(-)$1	294	238	244	18.0000
uuauuu	chr7:86825459-86825717(+)$1	258	27	33	18.0000
UUAUUU	chr5:179041322-179041567(-)$1	245	92	98	18.0000
UUAUUU	chr1:185266855-185267129(-)$1	274	126	132	18.0000
UUAUUU	chr17:80572449-80572813(-)$1	364	316	322	18.0000
UUAUUU	chr5:179041847-179042061(-)$1	214	45	51	18.0000
UUAUUU	chr8:23429677-23429892(+)$1	215	141	147	18.0000
UUAUUU	chr6:160199905-160200176(-)$1	271	113	119	18.0000

#otherMatches

#Struct PSSM
qfffff	chr11:85669367-85669611(-)$1	244	67	73	18.0000
cc!!ff	chr6:33384025-33384276(+)$1	251	67	73	18.0000
ccc22b	chr20:60757268-60757532(+)$1	264	147	153	18.0000
xxxxxx	chr12:56366276-56366543(+)$1	267	241	247	18.0000
[cccff	chr2:153511961-153512232(-)$1	271	29	35	18.0000
::::::	chr2:53897273-53897651(-)$1	378	286	292	18.0000
:::eee	chr2:99216781-99217089(-)$1	308	67	73	18.0000
55ccce	chr1:42642168-42642460(-)$1	292	128	134	18.0000
::::::	chr1:234741747-234742011(-)$1	264	30	36	18.0000
22====	chr1:213165731-213166035(-)$1	304	60	66	18.0000
PPPPPP	chr4:39825884-39826169(-)$1	285	102	108	18.0000
888888	chr2:55200014-55200259(-)$1	245	93	99	18.0000
!!eeee	chr1:226418840-226419096(-)$1	256	56	62	18.0000
uuuuuu	chr15:34819538-34819779(-)$1	241	60	66	18.0000
llgggg	chr18:211216-211508(+)$1	292	108	114	18.0000
ggnnnn	chr10:76990891-76991198(+)$1	307	74	80	18.0000
GGGGGG	chr16:75611435-75611717(+)$1	282	12	18	18.0000
HH::::	chr15:50852454-50852712(-)$1	258	13	19	18.0000
ecccmm	chr3:156865697-156865951(-)$1	254	220	226	18.0000
22ffff	chr12:133346277-133346526(-)$1	249	97	103	18.0000
ffff##	chr7:914350-914582(+)$1	232	37	43	18.0000
H_____	chr7:23544953-23545221(-)$1	268	161	167	18.0000
tttttt	chr13:107195708-107195982(-)$1	274	226	232	18.0000
::::::	chr10:103546060-103546381(-)$1	321	3	9	18.0000
++++++	chr3:39137793-39138041(+)$1	248	100	106	18.0000
ggggg]	chr8:20078051-20078348(+)$1	297	164	170	18.0000
d[eeee	chr10:124924661-124924962(+)$1	301	181	187	18.0000
h::::h	chr2:191798235-191798476(+)$1	241	167	173	18.0000
qqqqqf	chr2:10194036-10194323(+)$1	287	44	50	18.0000
dd333e	chr3:128889111-128889370(-)$1	259	75	81	18.0000
iiiiii	chr9:127998465-127998707(-)$1	242	175	181	18.0000
iiiiii	chr12:46752184-46752510(-)$1	326	271	277	18.0000
eee:::	chr4:83345729-83345980(-)$1	251	13	19	18.0000
::::::	chr2:61705015-61705309(-)$1	294	238	244	18.0000
::::::	chr7:86825459-86825717(+)$1	258	27	33	18.0000
ffffoo	chr5:179041322-179041567(-)$1	245	92	98	18.0000
nnnnbb	chr1:185266855-185267129(-)$1	274	126	132	18.0000
qqqqqe	chr17:80572449-80572813(-)$1	364	316	322	18.0000
:dddd[	chr5:179041847-179042061(-)$1	214	45	51	18.0000
fffffe	chr8:23429677-23429892(+)$1	215	141	147	18.0000
::::::	chr6:160199905-160200176(-)$1	271	113	119	18.0000

#DB
.)))))	chr11:85669367-85669611(-)$1	1	67	73	18.0000
((..((	chr6:33384025-33384276(+)$1	1	67	73	18.0000
)))..)	chr20:60757268-60757532(+)$1	1	147	153	18.0000
......	chr12:56366276-56366543(+)$1	1	241	247	18.0000
.(((((	chr2:153511961-153512232(-)$1	1	29	35	18.0000
......	chr2:53897273-53897651(-)$1	1	286	292	18.0000
...(((	chr2:99216781-99217089(-)$1	1	67	73	18.0000
..))))	chr1:42642168-42642460(-)$1	1	128	134	18.0000
......	chr1:234741747-234742011(-)$1	1	30	36	18.0000
..))))	chr1:213165731-213166035(-)$1	1	60	66	18.0000
......	chr4:39825884-39826169(-)$1	1	102	108	18.0000
......	chr2:55200014-55200259(-)$1	1	93	99	18.0000
..((((	chr1:226418840-226419096(-)$1	1	56	62	18.0000
......	chr15:34819538-34819779(-)$1	1	60	66	18.0000
..))))	chr18:211216-211508(+)$1	1	108	114	18.0000
((....	chr10:76990891-76991198(+)$1	1	74	80	18.0000
((((((	chr16:75611435-75611717(+)$1	1	12	18	18.0000
((....	chr15:50852454-50852712(-)$1	1	13	19	18.0000
((((..	chr3:156865697-156865951(-)$1	1	220	226	18.0000
..))))	chr12:133346277-133346526(-)$1	1	97	103	18.0000
((((..	chr7:914350-914582(+)$1	1	37	43	18.0000
).....	chr7:23544953-23545221(-)$1	1	161	167	18.0000
......	chr13:107195708-107195982(-)$1	1	226	232	18.0000
......	chr10:103546060-103546381(-)$1	1	3	9	18.0000
......	chr3:39137793-39138041(+)$1	1	100	106	18.0000
))))).	chr8:20078051-20078348(+)$1	1	164	170	18.0000
(.((((	chr10:124924661-124924962(+)$1	1	181	187	18.0000
)....(	chr2:191798235-191798476(+)$1	1	167	173	18.0000
.....)	chr2:10194036-10194323(+)$1	1	44	50	18.0000
))...)	chr3:128889111-128889370(-)$1	1	75	81	18.0000
))))))	chr9:127998465-127998707(-)$1	1	175	181	18.0000
((((((	chr12:46752184-46752510(-)$1	1	271	277	18.0000
)))...	chr4:83345729-83345980(-)$1	1	13	19	18.0000
......	chr2:61705015-61705309(-)$1	1	238	244	18.0000
......	chr7:86825459-86825717(+)$1	1	27	33	18.0000
((((..	chr5:179041322-179041567(-)$1	1	92	98	18.0000
....))	chr1:185266855-185267129(-)$1	1	126	132	18.0000
.....)	chr17:80572449-80572813(-)$1	1	316	322	18.0000
.((((.	chr5:179041847-179042061(-)$1	1	45	51	18.0000
)))))(	chr8:23429677-23429892(+)$1	1	141	147	18.0000
......	chr6:160199905-160200176(-)$1	1	113	119	18.0000

#PSSM
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	
A : 0.95	a : 0.04	
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	

#score	738.0000000000001
#seq	41
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_CDS_m1_run2.nuc.txt

#NT
ACA	chr10:116211295-116211519(-)$1	224	62	65	9.0000
ACA	chr2:159481531-159481793(+)$1	262	47	50	9.0000
ACA	chr12:57927986-57928240(-)$1	254	8	11	9.0000
ACA	chr9:74312800-74313088(-)$1	288	0	3	9.0000
ACA	chr7:139268516-139268783(-)$1	267	13	16	9.0000
ACA	chr19:6718300-6718523(-)$1	223	67	70	9.0000
ACA	chr1:92195402-92195630(-)$1	228	75	78	9.0000
ACA	chr2:216239908-216240166(-)$1	258	88	91	9.0000
ACA	chr6:142691248-142691483(+)$1	235	0	3	9.0000
ACA	chr17:65941913-65942126(+)$1	213	18	21	9.0000
ACA	chr10:97402785-97403062(-)$1	277	95	98	9.0000
ACA	chr2:174819605-174819857(-)$1	252	21	24	9.0000
ACA	chr21:34793816-34794079(+)$1	263	22	25	9.0000
ACA	chr1:16261871-16262195(+)$1	324	26	29	9.0000
ACA	chr1:171548950-171549183(+)$1	233	192	195	9.0000
ACA	chr10:60993963-60994247(+)$1	284	103	106	9.0000
ACA	chr2:21228891-21229100(-)$1	209	23	26	9.0000
ACA	chr12:9265963-9266204(-)$1	241	97	100	9.0000
aca	chr17:29700937-29701236(+)$1	299	22	25	9.0000
ACA	chr2:171902603-171902920(-)$1	317	42	45	9.0000
ACA	chr16:69727937-69728171(+)$1	234	14	17	9.0000
ACA	chr20:33345545-33345821(-)$1	276	16	19	9.0000
ACA	chr4:110384529-110384797(+)$1	268	9	12	9.0000
ACA	chrX:119575578-119575825(-)$1	247	94	97	9.0000
ACA	chr5:32444237-32444492(-)$1	255	118	121	9.0000
ACA	chr6:149699980-149700230(+)$1	250	8	11	9.0000
ACA	chr9:99113343-99113554(-)$1	211	97	100	9.0000
ACA	chr12:102151287-102151536(-)$1	249	125	128	9.0000
ACA	chr11:27389824-27390088(-)$1	264	41	44	9.0000
ACA	chr7:77256400-77256693(+)$1	293	29	32	9.0000
ACA	chr16:58580123-58580369(-)$1	246	16	19	9.0000
ACA	chr7:104746983-104747240(+)$1	257	53	56	9.0000
ACA	chr12:57009072-57009333(-)$1	261	39	42	9.0000
ACA	chr2:69745985-69746246(-)$1	261	41	44	9.0000
ACA	chr15:30010124-30010400(-)$1	276	5	8	9.0000
ACA	chr12:56669678-56669924(-)$1	246	18	21	9.0000
ACA	chr7:98935703-98935935(+)$1	232	25	28	9.0000
ACA	chr3:98518294-98518544(-)$1	250	51	54	9.0000
ACA	chr19:16664515-16664799(-)$1	284	75	78	9.0000
ACA	chr6:7568643-7568923(+)$1	280	51	54	9.0000
ACA	chr9:33135100-33135348(-)$1	248	40	43	9.0000
ACA	chr8:87414241-87414534(+)$1	293	49	52	9.0000
ACA	chr12:57626870-57627095(+)$1	225	86	89	9.0000
ACA	chr12:57108287-57108525(-)$1	238	62	65	9.0000
ACA	chr16:69727193-69727465(+)$1	272	4	7	9.0000
ACA	chr1:24021117-24021347(+)$1	230	28	31	9.0000
ACA	chr8:101718796-101719001(-)$1	205	47	50	9.0000
aca	chr12:7045869-7046126(+)$1	257	15	18	9.0000
ACA	chr5:72798673-72798953(+)$1	280	7	10	9.0000
ACA	chr1:153921618-153921888(-)$1	270	86	89	9.0000
ACA	chr14:94849250-94849466(-)$1	216	0	3	9.0000
ACA	chr11:85707768-85708032(-)$1	264	1	4	9.0000
ACA	chr2:21225302-21225528(-)$1	226	11	14	9.0000
ACA	chr14:39509946-39510191(-)$1	245	108	111	9.0000
ACA	chr16:87870037-87870287(-)$1	250	68	71	9.0000
aca	chr12:49426497-49426750(-)$1	253	22	25	9.0000
ACA	chr11:34119159-34119409(+)$1	250	237	240	9.0000
ACA	chr2:20482763-20483018(-)$1	255	22	25	9.0000
ACA	chr12:57118191-57118409(-)$1	218	4	7	9.0000
ACA	chr9:111640174-111640397(-)$1	223	17	20	9.0000
ACA	chr2:21224774-21224997(-)$1	223	37	40	9.0000
ACA	chr2:161135034-161135269(-)$1	235	7	10	9.0000
ACA	chr16:11785203-11785483(-)$1	280	6	9	9.0000
ACA	chr16:69727300-69727529(+)$1	229	5	8	9.0000
ACA	chr12:9243740-9243962(-)$1	222	85	88	9.0000
ACA	chr18:47017680-47017915(-)$1	235	22	25	9.0000
ACA	chr6:157099317-157099626(+)$1	309	63	66	9.0000
ACA	chr1:27100932-27101170(+)$1	238	33	36	9.0000
ACA	chr16:68225220-68225479(+)$1	259	16	19	9.0000
ACA	chr19:41811479-41811688(+)$1	209	43	46	9.0000
ACA	chr12:111157863-111158116(-)$1	253	56	59	9.0000
ACA	chr3:98526827-98527117(-)$1	290	189	192	9.0000
ACA	chr16:69727405-69727687(+)$1	282	57	60	9.0000
ACA	chr1:183519785-183520042(+)$1	257	27	30	9.0000
ACA	chr2:21233676-21233921(-)$1	245	18	21	9.0000
ACA	chr17:1582219-1582503(-)$1	284	46	49	9.0000
ACA	chr7:103131021-103131252(-)$1	231	26	29	9.0000
ACA	chr8:101721262-101721511(-)$1	249	198	201	9.0000
ACA	chr16:68156438-68156695(+)$1	257	28	31	9.0000
ACA	chr2:21228940-21229168(-)$1	228	4	7	9.0000
ACA	chr12:121877559-121877884(-)$1	325	15	18	9.0000
ACA	chr3:99567153-99567393(-)$1	240	16	19	9.0000
ACA	chr20:33345087-33345385(-)$1	298	32	35	9.0000
ACA	chr16:71884058-71884371(+)$1	313	100	103	9.0000
ACA	chr7:139305046-139305277(-)$1	231	24	27	9.0000
ACA	chr6:158516743-158517068(+)$1	325	32	35	9.0000
ACA	chr8:29927057-29927315(-)$1	258	154	157	9.0000
ACA	chr16:71884171-71884434(+)$1	263	38	41	9.0000
ACA	chr2:21230390-21230606(-)$1	216	14	17	9.0000
ACA	chr16:68225040-68225336(+)$1	296	115	118	9.0000
ACA	chr16:72829169-72829409(-)$1	240	0	3	9.0000
ACA	chr5:42801140-42801365(-)$1	225	29	32	9.0000
ACA	chr2:21229502-21229718(-)$1	216	23	26	9.0000
ACA	chr22:38617409-38617736(-)$1	327	79	82	9.0000
ACA	chr3:9506076-9506392(+)$1	316	28	31	9.0000
ACA	chr2:219447610-219447891(+)$1	281	125	128	9.0000
ACA	chr9:110068621-110068945(+)$1	324	53	56	9.0000
ACA	chr3:71102682-71103012(-)$1	330	79	82	9.0000
ACA	chr12:9229350-9229579(-)$1	229	11	14	9.0000

#otherMatches

#Struct PSSM
bdd	chr20:30132665-30132935(+)$1	270	126	129	9.0000
e::	chr10:116211295-116211519(-)$1	224	62	65	9.0000
^^^	chr2:159481531-159481793(+)$1	262	47	50	9.0000
!ao	chr12:57927986-57928240(-)$1	254	8	11	9.0000
:::	chr9:74312800-74313088(-)$1	288	0	3	9.0000
eee	chr7:139268516-139268783(-)$1	267	13	16	9.0000
ooo	chr19:6718300-6718523(-)$1	223	67	70	9.0000
g[c	chr1:92195402-92195630(-)$1	228	75	78	9.0000
:::	chr2:216239908-216240166(-)$1	258	88	91	9.0000
:::	chr6:142691248-142691483(+)$1	235	0	3	9.0000
LLL	chr17:65941913-65942126(+)$1	213	18	21	9.0000
!!b	chr10:97402785-97403062(-)$1	277	95	98	9.0000
LLL	chr2:174819605-174819857(-)$1	252	21	24	9.0000
mmm	chr21:34793816-34794079(+)$1	263	22	25	9.0000
:::	chr1:16261871-16262195(+)$1	324	26	29	9.0000
::D	chr1:171548950-171549183(+)$1	233	192	195	9.0000
iii	chr10:60993963-60994247(+)$1	284	103	106	9.0000
qqq	chr2:21228891-21229100(-)$1	209	23	26	9.0000
c]d	chr12:9265963-9266204(-)$1	241	97	100	9.0000
ggg	chr17:29700937-29701236(+)$1	299	22	25	9.0000
EEL	chr2:171902603-171902920(-)$1	317	42	45	9.0000
nnn	chr16:69727937-69728171(+)$1	234	14	17	9.0000
qqe	chr20:33345545-33345821(-)$1	276	16	19	9.0000
:::	chr4:110384529-110384797(+)$1	268	9	12	9.0000
:::	chrX:119575578-119575825(-)$1	247	94	97	9.0000
c:C	chr5:32444237-32444492(-)$1	255	118	121	9.0000
:EE	chr6:149699980-149700230(+)$1	250	8	11	9.0000
ddd	chr9:99113343-99113554(-)$1	211	97	100	9.0000
$$$	chr12:102151287-102151536(-)$1	249	125	128	9.0000
eee	chr11:27389824-27390088(-)$1	264	41	44	9.0000
RRG	chr7:77256400-77256693(+)$1	293	29	32	9.0000
FFF	chr16:58580123-58580369(-)$1	246	16	19	9.0000
EOO	chr7:104746983-104747240(+)$1	257	53	56	9.0000
c44	chr12:57009072-57009333(-)$1	261	39	42	9.0000
:::	chr2:69745985-69746246(-)$1	261	41	44	9.0000
ccc	chr15:30010124-30010400(-)$1	276	5	8	9.0000
:::	chr12:56669678-56669924(-)$1	246	18	21	9.0000
OOO	chr7:98935703-98935935(+)$1	232	25	28	9.0000
333	chr3:98518294-98518544(-)$1	250	51	54	9.0000
+++	chr19:16664515-16664799(-)$1	284	75	78	9.0000
mdd	chr6:7568643-7568923(+)$1	280	51	54	9.0000
5bb	chr9:33135100-33135348(-)$1	248	40	43	9.0000
ccc	chr8:87414241-87414534(+)$1	293	49	52	9.0000
yyy	chr12:57626870-57627095(+)$1	225	86	89	9.0000
ldd	chr12:57108287-57108525(-)$1	238	62	65	9.0000
:::	chr16:69727193-69727465(+)$1	272	4	7	9.0000
bb!	chr1:24021117-24021347(+)$1	230	28	31	9.0000
:::	chr8:101718796-101719001(-)$1	205	47	50	9.0000
mmm	chr12:7045869-7046126(+)$1	257	15	18	9.0000
eem	chr5:72798673-72798953(+)$1	280	7	10	9.0000
f[b	chr1:153921618-153921888(-)$1	270	86	89	9.0000
:::	chr14:94849250-94849466(-)$1	216	0	3	9.0000
:::	chr11:85707768-85708032(-)$1	264	1	4	9.0000
:::	chr2:21225302-21225528(-)$1	226	11	14	9.0000
c!!	chr14:39509946-39510191(-)$1	245	108	111	9.0000
777	chr16:87870037-87870287(-)$1	250	68	71	9.0000
:::	chr12:49426497-49426750(-)$1	253	22	25	9.0000
:::	chr11:34119159-34119409(+)$1	250	237	240	9.0000
{CC	chr2:20482763-20483018(-)$1	255	22	25	9.0000
:ff	chr12:57118191-57118409(-)$1	218	4	7	9.0000
EEE	chr9:111640174-111640397(-)$1	223	17	20	9.0000
uuu	chr2:21224774-21224997(-)$1	223	37	40	9.0000
ggg	chr2:161135034-161135269(-)$1	235	7	10	9.0000
EEE	chr16:11785203-11785483(-)$1	280	6	9	9.0000
:::	chr16:69727300-69727529(+)$1	229	5	8	9.0000
eee	chr12:9243740-9243962(-)$1	222	85	88	9.0000
::J	chr18:47017680-47017915(-)$1	235	22	25	9.0000
{GG	chr6:157099317-157099626(+)$1	309	63	66	9.0000
nnn	chr1:27100932-27101170(+)$1	238	33	36	9.0000
ppp	chr16:68225220-68225479(+)$1	259	16	19	9.0000
VVV	chr19:41811479-41811688(+)$1	209	43	46	9.0000
bb]	chr12:111157863-111158116(-)$1	253	56	59	9.0000
occ	chr3:98526827-98527117(-)$1	290	189	192	9.0000
:::	chr16:69727405-69727687(+)$1	282	57	60	9.0000
eee	chr1:183519785-183520042(+)$1	257	27	30	9.0000
:::	chr2:21233676-21233921(-)$1	245	18	21	9.0000
goo	chr17:1582219-1582503(-)$1	284	46	49	9.0000
:::	chr7:103131021-103131252(-)$1	231	26	29	9.0000
ZDD	chr8:101721262-101721511(-)$1	249	198	201	9.0000
EEE	chr16:68156438-68156695(+)$1	257	28	31	9.0000
:::	chr2:21228940-21229168(-)$1	228	4	7	9.0000
GG:	chr12:121877559-121877884(-)$1	325	15	18	9.0000
rrr	chr3:99567153-99567393(-)$1	240	16	19	9.0000
::e	chr20:33345087-33345385(-)$1	298	32	35	9.0000
:::	chr16:71884058-71884371(+)$1	313	100	103	9.0000
ccc	chr7:139305046-139305277(-)$1	231	24	27	9.0000
eee	chr6:158516743-158517068(+)$1	325	32	35	9.0000
fff	chr8:29927057-29927315(-)$1	258	154	157	9.0000
+++	chr16:71884171-71884434(+)$1	263	38	41	9.0000
D::	chr2:21230390-21230606(-)$1	216	14	17	9.0000
##d	chr16:68225040-68225336(+)$1	296	115	118	9.0000
:::	chr16:72829169-72829409(-)$1	240	0	3	9.0000
::D	chr5:42801140-42801365(-)$1	225	29	32	9.0000
ddd	chr2:21229502-21229718(-)$1	216	23	26	9.0000
mmm	chr22:38617409-38617736(-)$1	327	79	82	9.0000
ddd	chr3:9506076-9506392(+)$1	316	28	31	9.0000
DD:	chr2:219447610-219447891(+)$1	281	125	128	9.0000
mcc	chr9:110068621-110068945(+)$1	324	53	56	9.0000
^^^	chr3:71102682-71103012(-)$1	330	79	82	9.0000
{HH	chr12:9229350-9229579(-)$1	229	11	14	9.0000

#DB
(((	chr20:30132665-30132935(+)$1	1	126	129	9.0000
)..	chr10:116211295-116211519(-)$1	1	62	65	9.0000
...	chr2:159481531-159481793(+)$1	1	47	50	9.0000
.(.	chr12:57927986-57928240(-)$1	1	8	11	9.0000
...	chr9:74312800-74313088(-)$1	1	0	3	9.0000
)))	chr7:139268516-139268783(-)$1	1	13	16	9.0000
...	chr19:6718300-6718523(-)$1	1	67	70	9.0000
(.(	chr1:92195402-92195630(-)$1	1	75	78	9.0000
...	chr2:216239908-216240166(-)$1	1	88	91	9.0000
...	chr6:142691248-142691483(+)$1	1	0	3	9.0000
...	chr17:65941913-65942126(+)$1	1	18	21	9.0000
..(	chr10:97402785-97403062(-)$1	1	95	98	9.0000
...	chr2:174819605-174819857(-)$1	1	21	24	9.0000
...	chr21:34793816-34794079(+)$1	1	22	25	9.0000
...	chr1:16261871-16262195(+)$1	1	26	29	9.0000
..)	chr1:171548950-171549183(+)$1	1	192	195	9.0000
)))	chr10:60993963-60994247(+)$1	1	103	106	9.0000
...	chr2:21228891-21229100(-)$1	1	23	26	9.0000
).)	chr12:9265963-9266204(-)$1	1	97	100	9.0000
)))	chr17:29700937-29701236(+)$1	1	22	25	9.0000
((.	chr2:171902603-171902920(-)$1	1	42	45	9.0000
...	chr16:69727937-69728171(+)$1	1	14	17	9.0000
..)	chr20:33345545-33345821(-)$1	1	16	19	9.0000
...	chr4:110384529-110384797(+)$1	1	9	12	9.0000
...	chrX:119575578-119575825(-)$1	1	94	97	9.0000
).(	chr5:32444237-32444492(-)$1	1	118	121	9.0000
.((	chr6:149699980-149700230(+)$1	1	8	11	9.0000
)))	chr9:99113343-99113554(-)$1	1	97	100	9.0000
...	chr12:102151287-102151536(-)$1	1	125	128	9.0000
(((	chr11:27389824-27390088(-)$1	1	41	44	9.0000
..(	chr7:77256400-77256693(+)$1	1	29	32	9.0000
(((	chr16:58580123-58580369(-)$1	1	16	19	9.0000
(..	chr7:104746983-104747240(+)$1	1	53	56	9.0000
)..	chr12:57009072-57009333(-)$1	1	39	42	9.0000
...	chr2:69745985-69746246(-)$1	1	41	44	9.0000
(((	chr15:30010124-30010400(-)$1	1	5	8	9.0000
...	chr12:56669678-56669924(-)$1	1	18	21	9.0000
...	chr7:98935703-98935935(+)$1	1	25	28	9.0000
...	chr3:98518294-98518544(-)$1	1	51	54	9.0000
...	chr19:16664515-16664799(-)$1	1	75	78	9.0000
.))	chr6:7568643-7568923(+)$1	1	51	54	9.0000
.))	chr9:33135100-33135348(-)$1	1	40	43	9.0000
)))	chr8:87414241-87414534(+)$1	1	49	52	9.0000
...	chr12:57626870-57627095(+)$1	1	86	89	9.0000
.))	chr12:57108287-57108525(-)$1	1	62	65	9.0000
...	chr16:69727193-69727465(+)$1	1	4	7	9.0000
((.	chr1:24021117-24021347(+)$1	1	28	31	9.0000
...	chr8:101718796-101719001(-)$1	1	47	50	9.0000
...	chr12:7045869-7046126(+)$1	1	15	18	9.0000
((.	chr5:72798673-72798953(+)$1	1	7	10	9.0000
(.(	chr1:153921618-153921888(-)$1	1	86	89	9.0000
...	chr14:94849250-94849466(-)$1	1	0	3	9.0000
...	chr11:85707768-85708032(-)$1	1	1	4	9.0000
...	chr2:21225302-21225528(-)$1	1	11	14	9.0000
(..	chr14:39509946-39510191(-)$1	1	108	111	9.0000
...	chr16:87870037-87870287(-)$1	1	68	71	9.0000
...	chr12:49426497-49426750(-)$1	1	22	25	9.0000
...	chr11:34119159-34119409(+)$1	1	237	240	9.0000
.((	chr2:20482763-20483018(-)$1	1	22	25	9.0000
.((	chr12:57118191-57118409(-)$1	1	4	7	9.0000
(((	chr9:111640174-111640397(-)$1	1	17	20	9.0000
...	chr2:21224774-21224997(-)$1	1	37	40	9.0000
(((	chr2:161135034-161135269(-)$1	1	7	10	9.0000
(((	chr16:11785203-11785483(-)$1	1	6	9	9.0000
...	chr16:69727300-69727529(+)$1	1	5	8	9.0000
)))	chr12:9243740-9243962(-)$1	1	85	88	9.0000
..(	chr18:47017680-47017915(-)$1	1	22	25	9.0000
.((	chr6:157099317-157099626(+)$1	1	63	66	9.0000
...	chr1:27100932-27101170(+)$1	1	33	36	9.0000
...	chr16:68225220-68225479(+)$1	1	16	19	9.0000
...	chr19:41811479-41811688(+)$1	1	43	46	9.0000
)).	chr12:111157863-111158116(-)$1	1	56	59	9.0000
.))	chr3:98526827-98527117(-)$1	1	189	192	9.0000
...	chr16:69727405-69727687(+)$1	1	57	60	9.0000
(((	chr1:183519785-183520042(+)$1	1	27	30	9.0000
...	chr2:21233676-21233921(-)$1	1	18	21	9.0000
(..	chr17:1582219-1582503(-)$1	1	46	49	9.0000
...	chr7:103131021-103131252(-)$1	1	26	29	9.0000
.))	chr8:101721262-101721511(-)$1	1	198	201	9.0000
(((	chr16:68156438-68156695(+)$1	1	28	31	9.0000
...	chr2:21228940-21229168(-)$1	1	4	7	9.0000
((.	chr12:121877559-121877884(-)$1	1	15	18	9.0000
...	chr3:99567153-99567393(-)$1	1	16	19	9.0000
..(	chr20:33345087-33345385(-)$1	1	32	35	9.0000
...	chr16:71884058-71884371(+)$1	1	100	103	9.0000
)))	chr7:139305046-139305277(-)$1	1	24	27	9.0000
)))	chr6:158516743-158517068(+)$1	1	32	35	9.0000
(((	chr8:29927057-29927315(-)$1	1	154	157	9.0000
...	chr16:71884171-71884434(+)$1	1	38	41	9.0000
(..	chr2:21230390-21230606(-)$1	1	14	17	9.0000
..(	chr16:68225040-68225336(+)$1	1	115	118	9.0000
...	chr16:72829169-72829409(-)$1	1	0	3	9.0000
..(	chr5:42801140-42801365(-)$1	1	29	32	9.0000
)))	chr2:21229502-21229718(-)$1	1	23	26	9.0000
...	chr22:38617409-38617736(-)$1	1	79	82	9.0000
)))	chr3:9506076-9506392(+)$1	1	28	31	9.0000
((.	chr2:219447610-219447891(+)$1	1	125	128	9.0000
.))	chr9:110068621-110068945(+)$1	1	53	56	9.0000
...	chr3:71102682-71103012(-)$1	1	79	82	9.0000
.((	chr12:9229350-9229579(-)$1	1	11	14	9.0000

#PSSM
A : 0.97	a : 0.03	
C : 0.97	c : 0.03	
A : 0.97	a : 0.03	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_CDS_m2_run1.nuc.txt

#NT
CCUAUU	chrM:14203-14422(-)$1	219	162	168	15.5806
CCUAUU	chrM:10525-10740(+)$1	215	122	128	15.5806
ACUAUU	chrM:9779-9999(+)$1	220	174	180	13.9677
CCUAUU	chrM:10756-10983(+)$1	227	147	153	15.5806
CCUAUU	chrM:10540-10763(+)$1	223	107	113	15.5806
ACUAUU	chrM:13132-13377(+)$1	245	218	224	13.9677
CCUAUU	chrM:10792-11004(+)$1	212	111	117	15.5806
CCUAUU	chrM:10804-11048(+)$1	244	99	105	15.5806
ACUAUU	chr4:110745473-110745739(+)$1	266	46	52	13.9677
UCUAUU	chr4:110745069-110745290(+)$1	221	1	7	13.8064
CCUAUU	chrM:10783-10991(+)$1	208	120	126	15.5806
UCUAUU	chrM:8594-8842(+)$1	248	4	10	13.8064
CCUAUU	chrM:6473-6699(+)$1	226	129	135	15.5806
ACUAUU	chrM:9799-10034(+)$1	235	154	160	13.9677
CCUAUU	chrM:14222-14444(-)$1	222	184	190	15.5806
GCUAUU	chrM:14383-14601(-)$1	218	146	152	13.6451
CCUAUU	chrM:14252-14494(-)$1	242	234	240	15.5806
CCUAUU	chrM:14159-14377(-)$1	218	117	123	15.5806
CCUAUU	chrM:10747-10956(+)$1	209	156	162	15.5806
UCUAUU	chrM:8440-8650(+)$1	210	158	164	13.8064
CCUAUU	chrM:15617-15873(+)$1	256	8	14	15.5806
CCUAUU	chrM:15566-15817(+)$1	251	2	8	15.5806
GCUAUU	chrM:10148-10372(+)$1	224	85	91	13.6451
UCUAUU	chrM:8566-8794(+)$1	228	32	38	13.8064
UCUAUU	chrM:8450-8675(+)$1	225	148	154	13.8064
ACUAUU	chrM:13177-13404(+)$1	227	173	179	13.9677
GCUAUU	chrM:10206-10416(+)$1	210	27	33	13.6451
CCUAUU	chrM:14177-14400(-)$1	223	140	146	15.5806
ACUAUU	chrM:9834-10051(+)$1	217	119	125	13.9677
GCUAUU	chrM:14362-14583(-)$1	221	128	134	13.6451

#otherMatches

#Struct PSSM
^^^ccc	chrM:10710-10947(+)$1	237	193	199	15.5806
dhhhhh	chrM:14203-14422(-)$1	219	162	168	15.5806
b:::::	chrM:10525-10740(+)$1	215	122	128	15.5806
::::::	chrM:9779-9999(+)$1	220	174	180	13.9677
::::::	chrM:10756-10983(+)$1	227	147	153	15.5806
MMMDDD	chrM:10540-10763(+)$1	223	107	113	15.5806
55ccc2	chrM:13132-13377(+)$1	245	218	224	13.9677
^^^ccc	chrM:10792-11004(+)$1	212	111	117	15.5806
^^^ccc	chrM:10804-11048(+)$1	244	99	105	15.5806
::::::	chr4:110745473-110745739(+)$1	266	46	52	13.9677
dddd""	chr4:110745069-110745290(+)$1	221	1	7	13.8064
^^^ccc	chrM:10783-10991(+)$1	208	120	126	15.5806
::::::	chrM:8594-8842(+)$1	248	4	10	13.8064
::::::	chrM:6473-6699(+)$1	226	129	135	15.5806
dddd$$	chrM:9799-10034(+)$1	235	154	160	13.9677
FFFYYB	chrM:14222-14444(-)$1	222	184	190	15.5806
ccc444	chrM:14383-14601(-)$1	218	146	152	13.6451
FFF:::	chrM:14252-14494(-)$1	242	234	240	15.5806
e333ee	chrM:14159-14377(-)$1	218	117	123	15.5806
::::::	chrM:10747-10956(+)$1	209	156	162	15.5806
^^^^^^	chrM:8440-8650(+)$1	210	158	164	13.8064
::::EE	chrM:15617-15873(+)$1	256	8	14	15.5806
::::::	chrM:15566-15817(+)$1	251	2	8	15.5806
======	chrM:10148-10372(+)$1	224	85	91	13.6451
^^^^^^	chrM:8566-8794(+)$1	228	32	38	13.8064
^^^^^^	chrM:8450-8675(+)$1	225	148	154	13.8064
55ccc2	chrM:13177-13404(+)$1	227	173	179	13.9677
::::::	chrM:10206-10416(+)$1	210	27	33	13.6451
e333ee	chrM:14177-14400(-)$1	223	140	146	15.5806
dddd$$	chrM:9834-10051(+)$1	217	119	125	13.9677
dddd))	chrM:14362-14583(-)$1	221	128	134	13.6451

#DB
...)))	chrM:10710-10947(+)$1	1	193	199	15.5806
((((((	chrM:14203-14422(-)$1	1	162	168	15.5806
).....	chrM:10525-10740(+)$1	1	122	128	15.5806
......	chrM:9779-9999(+)$1	1	174	180	13.9677
......	chrM:10756-10983(+)$1	1	147	153	15.5806
...(((	chrM:10540-10763(+)$1	1	107	113	15.5806
..))).	chrM:13132-13377(+)$1	1	218	224	13.9677
...)))	chrM:10792-11004(+)$1	1	111	117	15.5806
...)))	chrM:10804-11048(+)$1	1	99	105	15.5806
......	chr4:110745473-110745739(+)$1	1	46	52	13.9677
((((..	chr4:110745069-110745290(+)$1	1	1	7	13.8064
...)))	chrM:10783-10991(+)$1	1	120	126	15.5806
......	chrM:8594-8842(+)$1	1	4	10	13.8064
......	chrM:6473-6699(+)$1	1	129	135	15.5806
((((..	chrM:9799-10034(+)$1	1	154	160	13.9677
)))..)	chrM:14222-14444(-)$1	1	184	190	15.5806
)))...	chrM:14383-14601(-)$1	1	146	152	13.6451
)))...	chrM:14252-14494(-)$1	1	234	240	15.5806
)...))	chrM:14159-14377(-)$1	1	117	123	15.5806
......	chrM:10747-10956(+)$1	1	156	162	15.5806
......	chrM:8440-8650(+)$1	1	158	164	13.8064
....((	chrM:15617-15873(+)$1	1	8	14	15.5806
......	chrM:15566-15817(+)$1	1	2	8	15.5806
((((((	chrM:10148-10372(+)$1	1	85	91	13.6451
......	chrM:8566-8794(+)$1	1	32	38	13.8064
......	chrM:8450-8675(+)$1	1	148	154	13.8064
..))).	chrM:13177-13404(+)$1	1	173	179	13.9677
......	chrM:10206-10416(+)$1	1	27	33	13.6451
)...))	chrM:14177-14400(-)$1	1	140	146	15.5806
((((..	chrM:9834-10051(+)$1	1	119	125	13.9677
((((..	chrM:14362-14583(-)$1	1	128	134	13.6451

#PSSM
C : 0.51	A : 0.19	U : 0.16	G : 0.12	
C : 0.99	
U : 0.99	
A : 0.99	
U : 0.99	
U : 0.99	

#score	456.70967741935453
#seq	31
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_transcript_m3_run1.nuc.txt

#NT
CCCUCCCC	chr9:2621749-2622029(+)$1	280	22	30	17.9090
cccuuccu	chr19:39626519-39626783(+)$1	264	109	117	16.7272
CCCGUCCC	chr16:30675985-30676216(+)$1	231	33	41	16.7272
cccuuccu	chr2:129071968-129072221(-)$1	253	148	156	16.7272
CCCUUCCC	chr12:56633161-56633434(-)$1	273	151	159	20.7272
CCCUUCCC	chr2:3422659-3423011(+)$1	352	222	230	20.7272
CCCUGCCC	chr15:90552709-90552987(+)$1	278	35	43	17.7272
ccccuccc	chr9:140166231-140166502(+)$1	271	13	21	17.0000
CCCUGCCC	chr3:48681204-48681485(-)$1	281	97	105	17.7272
cccuuccc	chr20:57466445-57466742(+)$1	297	148	156	20.7272
cccuuucc	chr20:39721947-39722282(+)$1	335	96	104	16.6363
CCCUACCC	chr7:94298781-94299011(+)$1	230	106	114	17.3636
ccccuccc	chr12:125601303-125601654(+)$1	351	126	134	17.0000
CCCUCCCC	chr6:41553470-41553754(+)$1	284	142	150	17.9090
cccucccc	chr2:11471010-11471249(-)$1	239	172	180	17.9090
CCCUUCCC	chr11:62392731-62392946(-)$1	215	80	88	20.7272
CCCUUCCU	chr4:1290324-1290590(+)$1	266	97	105	16.7272
CCCUUCCU	chr4:83763288-83763540(-)$1	252	117	125	16.7272
cccuuucc	chr6:112094378-112094675(-)$1	297	1	9	16.6363
CCCCUCCC	chr7:1028441-1028671(+)$1	230	51	59	17.0000
cccuuccc	chr7:104985455-104985752(-)$1	297	95	103	20.7272
CCCUGCCC	chr20:4902864-4903169(-)$1	305	220	228	17.7272
cccuuucc	chr10:98984976-98985256(-)$1	280	152	160	16.6363
cccucccc	chrX:19892715-19893006(-)$1	291	185	193	17.9090
cccucccc	chr1:57195836-57196142(-)$1	306	41	49	17.9090
CCCUUCCC	chr19:5090359-5090754(+)$1	395	304	312	20.7272
CCCUUCCA	chr20:62668414-62668665(+)$1	251	219	227	16.3636
cccuuccc	chr17:76182608-76182865(-)$1	257	70	78	20.7272
CCCUUUCC	chr1:40887705-40888023(+)$1	318	114	122	16.6363
cccuuccc	chr18:77671615-77671939(-)$1	324	169	177	20.7272
cccguccc	chr3:10915259-10915559(+)$1	300	107	115	16.7272
CCCUUCCC	chr2:242694513-242694842(+)$1	329	267	275	20.7272
CCCUUCCC	chr2:201275254-201275528(+)$1	274	109	117	20.7272
CCCUUCCC	chr19:41271018-41271315(+)$1	297	76	84	20.7272
cccuuccu	chr20:45854073-45854350(-)$1	277	104	112	16.7272
CCCUUCCC	chr2:135046269-135046557(+)$1	288	120	128	20.7272
CCCUUCCC	chrX:135944174-135944488(-)$1	314	122	130	20.7272
ccccuccc	chr20:31150699-31151002(-)$1	303	10	18	17.0000
CCCUCCCC	chr20:334356-334604(+)$1	248	71	79	17.9090
CCCUCCCC	chr17:7215450-7215688(+)$1	238	48	56	17.9090
cccuuccc	chr5:1096648-1096921(-)$1	273	65	73	20.7272
CCCCUCCC	chr17:79780770-79781137(-)$1	367	26	34	17.0000
cccuuccc	chr16:512753-513025(+)$1	272	6	14	20.7272
CCCUACCC	chr5:172378963-172379178(+)$1	215	61	69	17.3636
CCCAUCCC	chr3:176914450-176914741(-)$1	291	24	32	16.7272
CCCUGCCC	chr12:49332472-49332705(-)$1	233	30	38	17.7272
cccuuccc	chr7:737344-737650(-)$1	306	32	40	20.7272
CCCUUUCC	chr4:77996837-77997089(-)$1	252	15	23	16.6363
CCCUGCCC	chr11:119534481-119534736(-)$1	255	121	129	17.7272
CCCUGCCC	chr12:57492857-57493161(-)$1	304	156	164	17.7272
CCCUCCCC	chr11:2153854-2154071(-)$1	217	106	114	17.9090
CCCUUCCC	chr17:4849058-4849268(-)$1	210	84	92	20.7272
CCCUUCCC	chr10:103264063-103264334(+)$1	271	91	99	20.7272
CCCUUCCC	chr8:22058755-22059003(+)$1	248	139	147	20.7272

#otherMatches

#Struct PSSM
++++++++	chr11:85779003-85779300(-)$1	297	139	147	16.7272
JJJJJJJJ	chr9:2621749-2622029(+)$1	280	22	30	17.9090
::::::::	chr19:39626519-39626783(+)$1	264	109	117	16.7272
:::GGGGG	chr16:30675985-30676216(+)$1	231	33	41	16.7272
::::::::	chr2:129071968-129072221(-)$1	253	148	156	16.7272
::::::::	chr12:56633161-56633434(-)$1	273	151	159	20.7272
::gggggg	chr2:3422659-3423011(+)$1	352	222	230	20.7272
uuuuuuuu	chr15:90552709-90552987(+)$1	278	35	43	17.7272
ccc^^^^^	chr9:140166231-140166502(+)$1	271	13	21	17.0000
ccc]ccc]	chr3:48681204-48681485(-)$1	281	97	105	17.7272
::::::::	chr20:57466445-57466742(+)$1	297	148	156	20.7272
ccc333ff	chr20:39721947-39722282(+)$1	335	96	104	16.6363
++++++++	chr7:94298781-94299011(+)$1	230	106	114	17.3636
::::::::	chr12:125601303-125601654(+)$1	351	126	134	17.0000
c:::::::	chr6:41553470-41553754(+)$1	284	142	150	17.9090
::::::::	chr2:11471010-11471249(-)$1	239	172	180	17.9090
dddd333c	chr11:62392731-62392946(-)$1	215	80	88	20.7272
G:::::::	chr4:1290324-1290590(+)$1	266	97	105	16.7272
vvvvvvvv	chr4:83763288-83763540(-)$1	252	117	125	16.7272
::::::::	chr6:112094378-112094675(-)$1	297	1	9	16.6363
:::::::D	chr7:1028441-1028671(+)$1	230	51	59	17.0000
::::::::	chr7:104985455-104985752(-)$1	297	95	103	20.7272
nnnna22a	chr20:4902864-4903169(-)$1	305	220	228	17.7272
::::::::	chr10:98984976-98985256(-)$1	280	152	160	16.6363
::::::::	chrX:19892715-19893006(-)$1	291	185	193	17.9090
^^^^^^^^	chr1:57195836-57196142(-)$1	306	41	49	17.9090
zzzzzzzz	chr19:5090359-5090754(+)$1	395	304	312	20.7272
ddddoooo	chr20:62668414-62668665(+)$1	251	219	227	16.3636
::::::::	chr17:76182608-76182865(-)$1	257	70	78	20.7272
:::HHHHH	chr1:40887705-40888023(+)$1	318	114	122	16.6363
ccc!!ddd	chr18:77671615-77671939(-)$1	324	169	177	20.7272
::::::::	chr3:10915259-10915559(+)$1	300	107	115	16.7272
::::::::	chr2:242694513-242694842(+)$1	329	267	275	20.7272
MA{DDDD{	chr2:201275254-201275528(+)$1	274	109	117	20.7272
22ddddcc	chr19:41271018-41271315(+)$1	297	76	84	20.7272
^^^^^^^^	chr20:45854073-45854350(-)$1	277	104	112	16.7272
::::::::	chr2:135046269-135046557(+)$1	288	120	128	20.7272
rrrrrree	chrX:135944174-135944488(-)$1	314	122	130	20.7272
::::::::	chr20:31150699-31151002(-)$1	303	10	18	17.0000
::::::::	chr20:334356-334604(+)$1	248	71	79	17.9090
OGGGGGGG	chr17:7215450-7215688(+)$1	238	48	56	17.9090
::::::::	chr5:1096648-1096921(-)$1	273	65	73	20.7272
fff[bb[d	chr17:79780770-79781137(-)$1	367	26	34	17.0000
::::::::	chr16:512753-513025(+)$1	272	6	14	20.7272
444ggggg	chr5:172378963-172379178(+)$1	215	61	69	17.3636
eeee]ccc	chr3:176914450-176914741(-)$1	291	24	32	16.7272
::ccclll	chr12:49332472-49332705(-)$1	233	30	38	17.7272
::::::::	chr7:737344-737650(-)$1	306	32	40	20.7272
::::::::	chr4:77996837-77997089(-)$1	252	15	23	16.6363
^^^^^^^^	chr11:119534481-119534736(-)$1	255	121	129	17.7272
dd::::::	chr12:57492857-57493161(-)$1	304	156	164	17.7272
::::::::	chr11:2153854-2154071(-)$1	217	106	114	17.9090
::::::::	chr17:4849058-4849268(-)$1	210	84	92	20.7272
^^^^^^^^	chr10:103264063-103264334(+)$1	271	91	99	20.7272
mmmmffff	chr8:22058755-22059003(+)$1	248	139	147	20.7272

#DB
........	chr11:85779003-85779300(-)$1	1	139	147	16.7272
((((((((	chr9:2621749-2622029(+)$1	1	22	30	17.9090
........	chr19:39626519-39626783(+)$1	1	109	117	16.7272
...(((((	chr16:30675985-30676216(+)$1	1	33	41	16.7272
........	chr2:129071968-129072221(-)$1	1	148	156	16.7272
........	chr12:56633161-56633434(-)$1	1	151	159	20.7272
..((((((	chr2:3422659-3423011(+)$1	1	222	230	20.7272
........	chr15:90552709-90552987(+)$1	1	35	43	17.7272
(((.....	chr9:140166231-140166502(+)$1	1	13	21	17.0000
))).))).	chr3:48681204-48681485(-)$1	1	97	105	17.7272
........	chr20:57466445-57466742(+)$1	1	148	156	20.7272
)))...))	chr20:39721947-39722282(+)$1	1	96	104	16.6363
........	chr7:94298781-94299011(+)$1	1	106	114	17.3636
........	chr12:125601303-125601654(+)$1	1	126	134	17.0000
).......	chr6:41553470-41553754(+)$1	1	142	150	17.9090
........	chr2:11471010-11471249(-)$1	1	172	180	17.9090
))))...)	chr11:62392731-62392946(-)$1	1	80	88	20.7272
).......	chr4:1290324-1290590(+)$1	1	97	105	16.7272
........	chr4:83763288-83763540(-)$1	1	117	125	16.7272
........	chr6:112094378-112094675(-)$1	1	1	9	16.6363
.......(	chr7:1028441-1028671(+)$1	1	51	59	17.0000
........	chr7:104985455-104985752(-)$1	1	95	103	20.7272
....)..)	chr20:4902864-4903169(-)$1	1	220	228	17.7272
........	chr10:98984976-98985256(-)$1	1	152	160	16.6363
........	chrX:19892715-19893006(-)$1	1	185	193	17.9090
........	chr1:57195836-57196142(-)$1	1	41	49	17.9090
........	chr19:5090359-5090754(+)$1	1	304	312	20.7272
((((....	chr20:62668414-62668665(+)$1	1	219	227	16.3636
........	chr17:76182608-76182865(-)$1	1	70	78	20.7272
...)))))	chr1:40887705-40888023(+)$1	1	114	122	16.6363
(((..(((	chr18:77671615-77671939(-)$1	1	169	177	20.7272
........	chr3:10915259-10915559(+)$1	1	107	115	16.7272
........	chr2:242694513-242694842(+)$1	1	267	275	20.7272
.(.((((.	chr2:201275254-201275528(+)$1	1	109	117	20.7272
..))))((	chr19:41271018-41271315(+)$1	1	76	84	20.7272
........	chr20:45854073-45854350(-)$1	1	104	112	16.7272
........	chr2:135046269-135046557(+)$1	1	120	128	20.7272
......))	chrX:135944174-135944488(-)$1	1	122	130	20.7272
........	chr20:31150699-31151002(-)$1	1	10	18	17.0000
........	chr20:334356-334604(+)$1	1	71	79	17.9090
.(((((((	chr17:7215450-7215688(+)$1	1	48	56	17.9090
........	chr5:1096648-1096921(-)$1	1	65	73	20.7272
(((.((.(	chr17:79780770-79781137(-)$1	1	26	34	17.0000
........	chr16:512753-513025(+)$1	1	6	14	20.7272
...)))))	chr5:172378963-172379178(+)$1	1	61	69	17.3636
)))).)))	chr3:176914450-176914741(-)$1	1	24	32	16.7272
..(((...	chr12:49332472-49332705(-)$1	1	30	38	17.7272
........	chr7:737344-737650(-)$1	1	32	40	20.7272
........	chr4:77996837-77997089(-)$1	1	15	23	16.6363
........	chr11:119534481-119534736(-)$1	1	121	129	17.7272
))......	chr12:57492857-57493161(-)$1	1	156	164	17.7272
........	chr11:2153854-2154071(-)$1	1	106	114	17.9090
........	chr17:4849058-4849268(-)$1	1	84	92	20.7272
........	chr10:103264063-103264334(+)$1	1	91	99	20.7272
....))))	chr8:22058755-22059003(+)$1	1	139	147	20.7272

#PSSM
C : 0.63	c : 0.36	
C : 0.63	c : 0.36	
C : 0.63	c : 0.36	
U : 0.54	u : 0.29	c : 0.05	A : 0.03	C : 0.03	G : 0.01	g : 0.01	
U : 0.40	u : 0.30	G : 0.10	C : 0.09	c : 0.05	A : 0.03	
C : 0.60	c : 0.30	u : 0.05	U : 0.03	
C : 0.63	c : 0.36	
C : 0.58	c : 0.30	u : 0.05	U : 0.03	A : 0.01	

#score	1013.2727272727277
#seq	55
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_UTR_m3_run2.nuc.txt

#NT
UCCUGCUG	chr12:118582574-118582846(+)$1	272	181	189	15.6216
UCCUGCUG	chr1:9789596-9789859(-)$1	263	197	205	15.6216
CCCUCCUC	chr22:39916585-39916813(+)$1	228	34	42	11.8378
CUCUGCUG	chr5:134195129-134195473(+)$1	344	132	140	14.4054
CCCUGCUG	chr19:8367158-8367470(-)$1	312	86	94	18.8648
ACCUCCUG	chr16:30103600-30103915(-)$1	315	75	83	12.5135
GCCUGCUG	chr3:49052863-49053173(+)$1	310	291	299	15.3513
CCCUGCUG	chr16:57506034-57506331(-)$1	297	3	11	18.8648
CCCUGCUC	chr20:62330867-62331119(-)$1	252	104	112	14.8108
CCCUGUUG	chr16:89712068-89712396(-)$1	328	282	290	14.8108
CCAUGCUG	chr8:21939829-21940107(+)$1	278	152	160	15.0810
ACCUGCUG	chr14:76117355-76117616(-)$1	261	104	112	15.4864
CCCUCCUC	chr12:7311262-7311498(+)$1	236	12	20	11.8378
CACUGCUG	chr17:76168304-76168537(+)$1	233	189	197	14.4054
CCCAGCUG	chr16:29816023-29816317(+)$1	294	106	114	14.6756
CCCAGCUG	chr2:220084079-220084362(-)$1	283	144	152	14.6756
CCCUGUUG	chr6:90352794-90353041(-)$1	247	57	65	14.8108
UCCUGCUG	chr1:36770125-36770405(+)$1	280	271	279	15.6216
ACAUGCUG	chr1:154917006-154917258(-)$1	252	133	141	11.7027
CCUUGCUG	chr20:49507251-49507514(-)$1	263	114	122	14.6756
CCCUGUUG	chr17:7215408-7215642(+)$1	234	117	125	14.8108
CGCUGCUG	chr2:220403630-220403943(-)$1	313	70	78	14.4054
CCCUGCAG	chr1:2125003-2125261(-)$1	258	89	97	14.4054
CCCUCCUG	chr9:117074565-117074859(+)$1	294	61	69	15.8918
CCAUGCUG	chr17:39847021-39847276(+)$1	255	227	235	15.0810
CCAUGCUG	chr1:113243767-113244143(-)$1	376	66	74	15.0810
GCCUGCUG	chr1:54683854-54684117(+)$1	263	156	164	15.3513
CCCUUCUG	chr9:136335220-136335502(+)$1	282	253	261	15.0810
CCCUGAUG	chr11:252700-252998(+)$1	298	55	63	14.5405
CCCAGCUG	chr2:219679548-219679857(+)$1	309	80	88	14.6756
CCCUGCAG	chr9:140167569-140167893(+)$1	324	294	302	14.4054
CCCUGCUG	chr7:134127240-134127525(-)$1	285	257	265	18.8648
CCCUCCUG	chr16:28854136-28854406(-)$1	270	167	175	15.8918
UCCUGCUG	chr15:44085076-44085311(+)$1	235	8	16	15.6216
CCCUGCUU	chr5:150404927-150405151(+)$1	224	146	154	14.5405
CCCUCCUG	chr16:29869666-29869928(-)$1	262	33	41	15.8918

#otherMatches

#Struct PSSM
:::::EEE	chr3:52434999-52435257(-)$1	258	238	246	15.8918
ddddffff	chr12:118582574-118582846(+)$1	272	181	189	15.6216
eeeerrrr	chr1:9789596-9789859(-)$1	263	197	205	15.6216
:::CCCKK	chr22:39916585-39916813(+)$1	228	34	42	11.8378
[bb[ccco	chr5:134195129-134195473(+)$1	344	132	140	14.4054
mcccccca	chr19:8367158-8367470(-)$1	312	86	94	18.8648
cnnnnncc	chr16:30103600-30103915(-)$1	315	75	83	12.5135
JJJJJJ}B	chr3:49052863-49053173(+)$1	310	291	299	15.3513
::CCCDDD	chr16:57506034-57506331(-)$1	297	3	11	18.8648
nnnnbb]d	chr20:62330867-62331119(-)$1	252	104	112	14.8108
eeeee22c	chr16:89712068-89712396(-)$1	328	282	290	14.8108
~~~~BB}D	chr8:21939829-21940107(+)$1	278	152	160	15.0810
bb]bb]a]	chr14:76117355-76117616(-)$1	261	104	112	15.4864
JJJJJggg	chr12:7311262-7311498(+)$1	236	12	20	11.8378
EEE}CCCZ	chr17:76168304-76168537(+)$1	233	189	197	14.4054
ddcccbbb	chr16:29816023-29816317(+)$1	294	106	114	14.6756
ddd[ccc[	chr2:220084079-220084362(-)$1	283	144	152	14.6756
gbb:GGGG	chr6:90352794-90353041(-)$1	247	57	65	14.8108
\\\DDDD:	chr1:36770125-36770405(+)$1	280	271	279	15.6216
d:::::::	chr1:154917006-154917258(-)$1	252	133	141	11.7027
DDDD::gg	chr20:49507251-49507514(-)$1	263	114	122	14.6756
iiieeeee	chr17:7215408-7215642(+)$1	234	117	125	14.8108
c!!eeeee	chr2:220403630-220403943(-)$1	313	70	78	14.4054
pppppddd	chr1:2125003-2125261(-)$1	258	89	97	14.4054
EEE{CCCL	chr9:117074565-117074859(+)$1	294	61	69	15.8918
EEYYDDDD	chr17:39847021-39847276(+)$1	255	227	235	15.0810
$$$$hhhh	chr1:113243767-113244143(-)$1	376	66	74	15.0810
b%%%%%%e	chr1:54683854-54684117(+)$1	263	156	164	15.3513
????FFFF	chr9:136335220-136335502(+)$1	282	253	261	15.0810
dddmmmmd	chr11:252700-252998(+)$1	298	55	63	14.5405
eee!!ccc	chr2:219679548-219679857(+)$1	309	80	88	14.6756
dggggggg	chr9:140167569-140167893(+)$1	324	294	302	14.4054
g]ffffff	chr7:134127240-134127525(-)$1	285	257	265	18.8648
::EEEEE}	chr16:28854136-28854406(-)$1	270	167	175	15.8918
""eeeee[	chr15:44085076-44085311(+)$1	235	8	16	15.6216
ee[ccc&&	chr5:150404927-150405151(+)$1	224	146	154	14.5405
c'''''''	chr16:29869666-29869928(-)$1	262	33	41	15.8918

#DB
.....)))	chr3:52434999-52435257(-)$1	1	238	246	15.8918
))))))))	chr12:118582574-118582846(+)$1	1	181	189	15.6216
((((....	chr1:9789596-9789859(-)$1	1	197	205	15.6216
...(((..	chr22:39916585-39916813(+)$1	1	34	42	11.8378
.((.(((.	chr5:134195129-134195473(+)$1	1	132	140	14.4054
.)))((((	chr19:8367158-8367470(-)$1	1	86	94	18.8648
(.....))	chr16:30103600-30103915(-)$1	1	75	83	12.5135
)))))).)	chr3:49052863-49053173(+)$1	1	291	299	15.3513
..((((((	chr16:57506034-57506331(-)$1	1	3	11	18.8648
....)).)	chr20:62330867-62331119(-)$1	1	104	112	14.8108
)))))..)	chr16:89712068-89712396(-)$1	1	282	290	14.8108
....)).)	chr8:21939829-21940107(+)$1	1	152	160	15.0810
)).)).).	chr14:76117355-76117616(-)$1	1	104	112	15.4864
((((((((	chr12:7311262-7311498(+)$1	1	12	20	11.8378
))).))).	chr17:76168304-76168537(+)$1	1	189	197	14.4054
((((((((	chr16:29816023-29816317(+)$1	1	106	114	14.6756
(((.(((.	chr2:220084079-220084362(-)$1	1	144	152	14.6756
))).((((	chr6:90352794-90353041(-)$1	1	57	65	14.8108
...)))).	chr1:36770125-36770405(+)$1	1	271	279	15.6216
).......	chr1:154917006-154917258(-)$1	1	133	141	11.7027
((((..((	chr20:49507251-49507514(-)$1	1	114	122	14.6756
((((((((	chr17:7215408-7215642(+)$1	1	117	125	14.8108
(..(((((	chr2:220403630-220403943(-)$1	1	70	78	14.4054
.....)))	chr1:2125003-2125261(-)$1	1	89	97	14.4054
(((.(((.	chr9:117074565-117074859(+)$1	1	61	69	15.8918
))..))))	chr17:39847021-39847276(+)$1	1	227	235	15.0810
....((((	chr1:113243767-113244143(-)$1	1	66	74	15.0810
(......(	chr1:54683854-54684117(+)$1	1	156	164	15.3513
....))))	chr9:136335220-136335502(+)$1	1	253	261	15.0810
(((....)	chr11:252700-252998(+)$1	1	55	63	14.5405
(((..(((	chr2:219679548-219679857(+)$1	1	80	88	14.6756
((((((((	chr9:140167569-140167893(+)$1	1	294	302	14.4054
).))))))	chr7:134127240-134127525(-)$1	1	257	265	18.8648
..))))).	chr16:28854136-28854406(-)$1	1	167	175	15.8918
..(((((.	chr15:44085076-44085311(+)$1	1	8	16	15.6216
((.(((..	chr5:150404927-150405151(+)$1	1	146	154	14.5405
(.......	chr16:29869666-29869928(-)$1	1	33	41	15.8918

#PSSM
C : 0.75	U : 0.10	A : 0.08	G : 0.05	
C : 0.91	U : 0.02	A : 0.02	G : 0.02	
C : 0.86	A : 0.10	U : 0.02	
U : 0.91	A : 0.08	
G : 0.78	C : 0.18	U : 0.02	
C : 0.89	U : 0.08	A : 0.02	
U : 0.94	A : 0.05	
G : 0.89	C : 0.08	U : 0.02	

#score	556.1081081081077
#seq	37
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_transcript_m3_run2.nuc.txt

#NT
UUUUUCUUUCU	chr1:28217998-28218269(-)$1	271	241	252	18.2272
UUUUUGUAUUU	chr1:202697776-202698062(-)$1	286	92	103	18.5681
UAUUAUUUUUU	chr2:217070143-217070417(+)$1	274	18	29	18.1136
UUUUUUUUUUU	chr17:73132002-73132292(-)$1	290	222	233	26.0681
UAAUUUUUUUU	chr3:33908306-33908551(+)$1	245	233	244	18.1136
uuuuuuuuuuu	chr2:232319426-232319661(-)$1	235	90	101	26.0681
GUUUUGUUUUU	chr19:4037883-4038137(+)$1	254	97	108	18.2272
UUUUCUUUUCU	chr11:46765208-46765472(-)$1	264	174	185	18.3409
UUUUUAGUUUU	chr2:70316052-70316312(+)$1	260	100	111	18.5681
AUUUGUUUUUU	chr5:133307548-133307807(-)$1	259	78	89	18.1136
UAAUUUUUUUU	chr12:102122623-102122921(+)$1	298	274	285	18.1136
uuuuuuuuuuu	chr1:33145874-33146149(+)$1	275	65	76	26.0681
UUUUUUUGUUU	chr17:74730942-74731180(-)$1	238	226	237	21.8636
CUUUUUCUUUU	chr15:45009706-45009949(+)$1	243	79	90	17.9999
UUUUUGUUCUU	chr2:162267732-162267996(+)$1	264	65	76	18.3409
AUUUUUUUUUU	chr15:66794117-66794343(-)$1	226	32	43	22.0909
uuuucuuuuuu	chr1:39500104-39500358(+)$1	254	220	231	22.3181
UUUUCUUUUUU	chr12:16056083-16056368(+)$1	285	193	204	22.3181
UUUUUUCUUUU	chr5:126172022-126172301(+)$1	279	215	226	22.0909
uuuuuuuuuuu	chr1:32691945-32692190(+)$1	245	223	234	26.0681
UUGUUUUUUGU	chr12:120637127-120637353(-)$1	226	52	63	17.8863
UUGUUUUAUUU	chr1:201103818-201104081(-)$1	263	165	176	18.3409
UUGUUUUAUUU	chr4:83274902-83275201(-)$1	299	62	73	18.3409
AUUUUUUUUUU	chr17:66526845-66527102(+)$1	257	91	102	22.0909
UUUCUUUUUUU	chr11:67165711-67165960(-)$1	249	88	99	21.8636
uuuuuaguuuu	chr6:31804110-31804327(+)$1	217	72	83	18.5681
UUUUUUGUUUU	chr7:54825114-54825385(-)$1	271	81	92	22.4318
UAUUUUGUUUU	chr2:65315154-65315423(-)$1	269	92	103	18.5681
UUUUUUUUCUU	chr2:170494001-170494313(+)$1	312	150	161	21.9772
uuuuuuuuuuu	chr5:179041585-179041828(-)$1	243	21	32	26.0681
uuuuuuuuuuu	chr3:9848164-9848406(+)$1	242	36	47	26.0681
CUUUUUUUGUU	chr17:66528600-66528853(+)$1	253	239	250	17.7727
UUUUUUUUUUU	chr6:135286176-135286451(-)$1	275	1	12	26.0681
UUUUUUUUUUU	chr14:69847017-69847268(-)$1	251	210	221	26.0681
UUUUCUUCUUU	chr1:36101855-36102104(-)$1	249	54	65	18.1136
UGUGUUUUUUU	chr22:41368489-41368754(+)$1	265	90	101	17.7727
UUUUUGGUUUU	chr17:39847723-39847940(+)$1	217	89	100	18.7954
UUUGUUUUUCU	chr11:125453629-125453909(+)$1	280	241	252	17.9999
UUUGUCUUUUU	chrX:154007035-154007327(-)$1	292	233	244	18.1136
UUGUUUUUCUU	chr17:7144563-7144812(-)$1	249	89	100	18.1136
UUUUGUUUUCU	chr8:11696393-11696639(+)$1	246	152	163	18.1136
UUUCUUUUUUU	chrX:119010434-119010693(+)$1	259	195	206	21.8636
UCUUUUUAUUU	chr11:61067117-61067415(-)$1	298	189	200	17.9999

#otherMatches

#Struct PSSM
mmmmggggggg	chr2:122523048-122523342(+)$1	294	88	99	21.8636
iiiiiiiii::	chr1:28217998-28218269(-)$1	271	241	252	18.2272
yyyyyyygggg	chr1:202697776-202698062(-)$1	286	92	103	18.5681
JJJJJSSSSSS	chr2:217070143-217070417(+)$1	274	18	29	18.1136
ggggg::ffff	chr17:73132002-73132292(-)$1	290	222	233	26.0681
E::::::::::	chr3:33908306-33908551(+)$1	245	233	244	18.1136
===========	chr2:232319426-232319661(-)$1	235	90	101	26.0681
>>>>>ccc]dd	chr19:4037883-4038137(+)$1	254	97	108	18.2272
oooccc:::::	chr11:46765208-46765472(-)$1	264	174	185	18.3409
^^^^^^^^^^^	chr2:70316052-70316312(+)$1	260	100	111	18.5681
d"""hhhhhhh	chr5:133307548-133307807(-)$1	259	78	89	18.1136
:::::::::::	chr12:102122623-102122921(+)$1	298	274	285	18.1136
:::::::::::	chr1:33145874-33146149(+)$1	275	65	76	26.0681
HHHHH::::::	chr17:74730942-74731180(-)$1	238	226	237	21.8636
cccccc22eee	chr15:45009706-45009949(+)$1	243	79	90	17.9999
####=======	chr2:162267732-162267996(+)$1	264	65	76	18.3409
yyyyyyyyyyy	chr15:66794117-66794343(-)$1	226	32	43	22.0909
JJJBB:::hhh	chr1:39500104-39500358(+)$1	254	220	231	22.3181
========###	chr12:16056083-16056368(+)$1	285	193	204	22.3181
c22hhhhhhhh	chr5:126172022-126172301(+)$1	279	215	226	22.0909
:::::::::::	chr1:32691945-32692190(+)$1	245	223	234	26.0681
eeeeeoooooo	chr12:120637127-120637353(-)$1	226	52	63	17.8863
b]eeeee:HHH	chr1:201103818-201104081(-)$1	263	165	176	18.3409
ppbb333gggg	chr4:83274902-83275201(-)$1	299	62	73	18.3409
JJJJJJJ::::	chr17:66526845-66527102(+)$1	257	91	102	22.0909
xxxxxxxxxxx	chr11:67165711-67165960(-)$1	249	88	99	21.8636
::::::fffff	chr6:31804110-31804327(+)$1	217	72	83	18.5681
:::::DDDDGG	chr7:54825114-54825385(-)$1	271	81	92	22.4318
nnnnniiiiii	chr2:65315154-65315423(-)$1	269	92	103	18.5681
$$$$bb!!ggg	chr2:170494001-170494313(+)$1	312	150	161	21.9772
:::::::::::	chr5:179041585-179041828(-)$1	243	21	32	26.0681
DWWWWWWWWWW	chr3:9848164-9848406(+)$1	242	36	47	26.0681
@@@@@@EEEEE	chr17:66528600-66528853(+)$1	253	239	250	17.7727
:ggggggg[ee	chr6:135286176-135286451(-)$1	275	1	12	26.0681
C::::::::::	chr14:69847017-69847268(-)$1	251	210	221	26.0681
&&&&&&eeeee	chr1:36101855-36102104(-)$1	249	54	65	18.1136
~~~JJJJJJJJ	chr22:41368489-41368754(+)$1	265	90	101	17.7727
$$$$$bbrrrr	chr17:39847723-39847940(+)$1	217	89	100	18.7954
HHHHHHHH___	chr11:125453629-125453909(+)$1	280	241	252	17.9999
::::::::::h	chrX:154007035-154007327(-)$1	292	233	244	18.1136
::hhhhhhhhb	chr17:7144563-7144812(-)$1	249	89	100	18.1136
^^^^^^^^^^^	chr8:11696393-11696639(+)$1	246	152	163	18.1136
eee22eeeeed	chrX:119010434-119010693(+)$1	259	195	206	21.8636
d::::::::::	chr11:61067117-61067415(-)$1	298	189	200	17.9999

#DB
....)))))))	chr2:122523048-122523342(+)$1	1	88	99	21.8636
)))))))))..	chr1:28217998-28218269(-)$1	1	241	252	18.2272
.......))))	chr1:202697776-202698062(-)$1	1	92	103	18.5681
(((((......	chr2:217070143-217070417(+)$1	1	18	29	18.1136
)))))..((((	chr17:73132002-73132292(-)$1	1	222	233	26.0681
)..........	chr3:33908306-33908551(+)$1	1	233	244	18.1136
(((((((((((	chr2:232319426-232319661(-)$1	1	90	101	26.0681
.....))).))	chr19:4037883-4038137(+)$1	1	97	108	18.2272
...))).....	chr11:46765208-46765472(-)$1	1	174	185	18.3409
...........	chr2:70316052-70316312(+)$1	1	100	111	18.5681
(...(((((((	chr5:133307548-133307807(-)$1	1	78	89	18.1136
...........	chr12:102122623-102122921(+)$1	1	274	285	18.1136
...........	chr1:33145874-33146149(+)$1	1	65	76	26.0681
)))))......	chr17:74730942-74731180(-)$1	1	226	237	21.8636
))))))..)))	chr15:45009706-45009949(+)$1	1	79	90	17.9999
....(((((((	chr2:162267732-162267996(+)$1	1	65	76	18.3409
...........	chr15:66794117-66794343(-)$1	1	32	43	22.0909
)))))...(((	chr1:39500104-39500358(+)$1	1	220	231	22.3181
((((((((...	chr12:16056083-16056368(+)$1	1	193	204	22.3181
)..))))))))	chr5:126172022-126172301(+)$1	1	215	226	22.0909
...........	chr1:32691945-32692190(+)$1	1	223	234	26.0681
(((((......	chr12:120637127-120637353(-)$1	1	52	63	17.8863
).))))).)))	chr1:201103818-201104081(-)$1	1	165	176	18.3409
..))...))))	chr4:83274902-83275201(-)$1	1	62	73	18.3409
(((((((....	chr17:66526845-66527102(+)$1	1	91	102	22.0909
...........	chr11:67165711-67165960(-)$1	1	88	99	21.8636
......(((((	chr6:31804110-31804327(+)$1	1	72	83	18.5681
.....((((((	chr7:54825114-54825385(-)$1	1	81	92	22.4318
.....))))))	chr2:65315154-65315423(-)$1	1	92	103	18.5681
....((..(((	chr2:170494001-170494313(+)$1	1	150	161	21.9772
...........	chr5:179041585-179041828(-)$1	1	21	32	26.0681
(..........	chr3:9848164-9848406(+)$1	1	36	47	26.0681
......)))))	chr17:66528600-66528853(+)$1	1	239	250	17.7727
.(((((((.((	chr6:135286176-135286451(-)$1	1	1	12	26.0681
)..........	chr14:69847017-69847268(-)$1	1	210	221	26.0681
......(((((	chr1:36101855-36102104(-)$1	1	54	65	18.1136
...))))))))	chr22:41368489-41368754(+)$1	1	90	101	17.7727
.....((....	chr17:39847723-39847940(+)$1	1	89	100	18.7954
))))))))...	chr11:125453629-125453909(+)$1	1	241	252	17.9999
..........(	chrX:154007035-154007327(-)$1	1	233	244	18.1136
..(((((((((	chr17:7144563-7144812(-)$1	1	89	100	18.1136
...........	chr8:11696393-11696639(+)$1	1	152	163	18.1136
)))..))))))	chrX:119010434-119010693(+)$1	1	195	206	21.8636
)..........	chr11:61067117-61067415(-)$1	1	189	200	17.9999

#PSSM
U : 0.70	u : 0.15	A : 0.06	C : 0.04	G : 0.02	
U : 0.70	u : 0.15	A : 0.09	G : 0.02	C : 0.02	
U : 0.70	u : 0.15	G : 0.09	A : 0.04	
U : 0.72	u : 0.15	G : 0.06	C : 0.04	
U : 0.70	u : 0.13	C : 0.06	G : 0.04	A : 0.02	c : 0.02	
U : 0.68	u : 0.13	G : 0.09	C : 0.04	A : 0.02	a : 0.02	
U : 0.70	u : 0.13	G : 0.09	C : 0.04	g : 0.02	
U : 0.70	u : 0.15	A : 0.09	G : 0.02	C : 0.02	
U : 0.72	u : 0.15	C : 0.06	G : 0.04	
U : 0.72	u : 0.15	C : 0.09	G : 0.02	
U : 0.84	u : 0.15	

#score	906.5454545454539
#seq	44
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_CDS_m3_run2.nuc.txt

#NT
AGGAAAGAAAG	chr2:232325435-232325678(-)$1	243	138	149	23.6250
agaaaagaagg	chr14:102551150-102551433(-)$1	283	235	246	23.6250
ACGAAAGAAGG	chr2:232325128-232325375(-)$1	247	125	136	24.8750
UGGUAAGAAGG	chr2:232326226-232326502(-)$1	276	4	15	20.5000
AGGAAAGAAGG	chr4:174253124-174253379(-)$1	255	28	39	27.3750
ACGAAAGAAGG	chr2:232325089-232325328(-)$1	239	78	89	24.8750
AGGCAAGAAGG	chr2:232326529-232326758(-)$1	229	50	61	24.2500

#otherMatches

#Struct PSSM
ffff:::HHHH	chr19:8538961-8539228(+)$1	267	87	98	19.8750
eeeee$$$$$c	chr2:232325435-232325678(-)$1	243	138	149	23.6250
:::::::::::	chr14:102551150-102551433(-)$1	283	235	246	23.6250
++++++++ddd	chr2:232325128-232325375(-)$1	247	125	136	24.8750
D{BBPPPPPPP	chr2:232326226-232326502(-)$1	276	4	15	20.5000
^^^^^^^^^^^	chr4:174253124-174253379(-)$1	255	28	39	27.3750
++++++++ddd	chr2:232325089-232325328(-)$1	239	78	89	24.8750
:ccc$$$$$cc	chr2:232326529-232326758(-)$1	229	50	61	24.2500

#DB
))))...((((	chr19:8538961-8539228(+)$1	1	87	98	19.8750
(((((.....(	chr2:232325435-232325678(-)$1	1	138	149	23.6250
...........	chr14:102551150-102551433(-)$1	1	235	246	23.6250
........(((	chr2:232325128-232325375(-)$1	1	125	136	24.8750
(.((.......	chr2:232326226-232326502(-)$1	1	4	15	20.5000
...........	chr4:174253124-174253379(-)$1	1	28	39	27.3750
........(((	chr2:232325089-232325328(-)$1	1	78	89	24.8750
.(((.....((	chr2:232326529-232326758(-)$1	1	50	61	24.2500

#PSSM
A : 0.75	a : 0.12	U : 0.12	
G : 0.62	C : 0.25	g : 0.12	
G : 0.87	a : 0.12	
A : 0.62	a : 0.12	U : 0.12	C : 0.12	
A : 0.87	a : 0.12	
A : 0.75	U : 0.12	a : 0.12	
G : 0.87	g : 0.12	
A : 0.75	G : 0.12	a : 0.12	
A : 0.87	a : 0.12	
G : 0.75	A : 0.12	g : 0.12	
G : 0.87	g : 0.12	

#score	189.0
#seq	8
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_CDS_m1_run2.nuc.txt

#NT
UGCCCAC	chr16:30749745-30749986(+)$1	241	65	72	12.2037
GGGCCAC	chr1:160388856-160389167(+)$1	311	77	84	12.6666
UGGCCCC	chr22:23524008-23524212(+)$1	204	69	76	12.4814
UGGCCCC	chr18:77895054-77895343(+)$1	289	91	98	12.4814
UUGCCAC	chr1:40702261-40702505(+)$1	244	98	105	11.6481
UGGGCAC	chr2:27000924-27001216(+)$1	292	248	255	12.0185
UAGCCAC	chr19:30164970-30165209(+)$1	239	144	151	11.7407
UGGCCAA	chr17:43011637-43011886(-)$1	249	140	147	12.2962
UGGCGAC	chr3:52521688-52521935(+)$1	247	114	121	12.2962
UGGCCUC	chr7:1481866-1482099(-)$1	233	84	91	12.6666
UGGCCCC	chr8:145140034-145140319(+)$1	285	116	123	12.4814
GGGCCAC	chr6:7231978-7232239(+)$1	261	168	175	12.6666
UGGCCAC	chr19:19136675-19136912(-)$1	237	124	131	16.2777
UGCCCAC	chr1:27105790-27106043(+)$1	253	218	225	12.2037
UGGCCUC	chr5:74638390-74638609(+)$1	219	66	73	12.6666
UGGCCUC	chr19:15509383-15509639(-)$1	256	231	238	12.6666
GGGCCAC	chr19:41248230-41248485(-)$1	255	47	54	12.6666
UGGCUAC	chr12:53662934-53663234(+)$1	300	40	47	12.5740
UGACCAC	chr6:31731088-31731299(+)$1	211	5	12	11.9259
UGGCUAC	chr1:173772268-173772514(-)$1	246	151	158	12.5740
UGGCAAC	chr21:34923006-34923230(+)$1	224	188	195	12.2962
uggccag	chr22:41832393-41832635(-)$1	242	113	120	12.4814
UGGCCUC	chr9:140611392-140611639(+)$1	247	27	34	12.6666
UGCCCAC	chr11:66625247-66625464(+)$1	217	69	76	12.2037
GGGCCAC	chr12:57910543-57910809(-)$1	266	245	252	12.6666
UAGCCAC	chr2:170411532-170411776(-)$1	244	183	190	11.7407
UGGCCAC	chr19:15507926-15508171(-)$1	245	216	223	16.2777
UGGACAC	chr5:179228789-179229065(-)$1	276	5	12	12.2037
UGGCCUC	chr1:19536467-19536692(-)$1	225	107	114	12.6666
UGGCCAG	chr5:139060508-139060750(+)$1	242	21	28	12.4814
UGGCUAC	chr1:228402495-228402797(+)$1	302	181	188	12.5740
UGGCCGC	chr2:242610664-242610947(+)$1	283	6	13	12.3888
UGUCCAC	chr3:48732510-48732731(-)$1	221	72	79	11.9259
GGGCCAC	chr1:55522983-55523211(+)$1	228	33	40	12.6666
UGGCUAC	chr15:43712643-43712894(-)$1	251	219	226	12.5740
GGGCCAC	chr19:45648883-45649131(+)$1	248	122	129	12.6666
UGGACAC	chr16:2814484-2814759(+)$1	275	181	188	12.2037
UGGCUAC	chr17:46136099-46136413(+)$1	314	156	163	12.5740
UGGACAC	chr7:150935110-150935365(+)$1	255	94	101	12.2037
UGGCCAU	chr22:22893283-22893496(-)$1	213	82	89	12.3888
UGGACAC	chr11:65547129-65547424(-)$1	295	133	140	12.2037
UGGCCAG	chr16:30536007-30536249(-)$1	242	102	109	12.4814
GGGCCAC	chr19:42703514-42703756(-)$1	242	205	212	12.6666
UGGGCAC	chr19:46174385-46174653(+)$1	268	127	134	12.0185
UGGCGAC	chr5:137681110-137681349(+)$1	239	44	51	12.2962
UGGCCAG	chr19:59074259-59074515(-)$1	256	122	129	12.4814
UGGCCAA	chr9:134074240-134074450(+)$1	210	34	41	12.2962
UGCCCAC	chr22:42276711-42276930(+)$1	219	69	76	12.2037
UGGCCAU	chr1:15987165-15987409(+)$1	244	175	182	12.3888
UGGCCAU	chr19:52090155-52090410(+)$1	255	211	218	12.3888
UGGCAAC	chr20:49510151-49510407(-)$1	256	212	219	12.2962
UGGCCAC	chr3:12858319-12858579(+)$1	260	120	127	16.2777
CGGCCAC	chr11:70260576-70260861(+)$1	285	79	86	12.1111

#otherMatches

#Struct PSSM
fffff44	chr12:863302-863552(+)$1	250	79	86	12.3888
b$$$$$b	chr16:30749745-30749986(+)$1	241	65	72	12.2037
=eeeee#	chr1:160388856-160389167(+)$1	311	77	84	12.6666
occc:ff	chr22:23524008-23524212(+)$1	204	69	76	12.4814
ffff###	chr18:77895054-77895343(+)$1	289	91	98	12.4814
E{BBCCC	chr1:40702261-40702505(+)$1	244	98	105	11.6481
||DDDD}	chr2:27000924-27001216(+)$1	292	248	255	12.0185
d22bb33	chr19:30164970-30165209(+)$1	239	144	151	11.7407
qdddd22	chr17:43011637-43011886(-)$1	249	140	147	12.2962
EEEEE{A	chr3:52521688-52521935(+)$1	247	114	121	12.2962
g::dddd	chr7:1481866-1482099(-)$1	233	84	91	12.6666
mbbhhhh	chr8:145140034-145140319(+)$1	285	116	123	12.4814
eeeeemm	chr6:7231978-7232239(+)$1	261	168	175	12.6666
hhhhhhh	chr19:19136675-19136912(-)$1	237	124	131	16.2777
2bbffff	chr1:27105790-27106043(+)$1	253	218	225	12.2037
CCCdddd	chr5:74638390-74638609(+)$1	219	66	73	12.6666
444cccd	chr19:15509383-15509639(-)$1	256	231	238	12.6666
$ddddoo	chr19:41248230-41248485(-)$1	255	47	54	12.6666
!dddd[c	chr12:53662934-53663234(+)$1	300	40	47	12.5740
BB{EEEE	chr6:31731088-31731299(+)$1	211	5	12	11.9259
dddllld	chr1:173772268-173772514(-)$1	246	151	158	12.5740
ggggggg	chr21:34923006-34923230(+)$1	224	188	195	12.2962
[dddd[c	chr22:41832393-41832635(-)$1	242	113	120	12.4814
eeeeeuu	chr9:140611392-140611639(+)$1	247	27	34	12.6666
bmmmmbb	chr11:66625247-66625464(+)$1	217	69	76	12.2037
EE_____	chr12:57910543-57910809(-)$1	266	245	252	12.6666
hhhhccc	chr2:170411532-170411776(-)$1	244	183	190	11.7407
[bb!!ao	chr19:15507926-15508171(-)$1	245	216	223	16.2777
EEE{A{E	chr5:179228789-179229065(-)$1	276	5	12	12.2037
ff[dddd	chr1:19536467-19536692(-)$1	225	107	114	12.6666
fffff[b	chr5:139060508-139060750(+)$1	242	21	28	12.4814
eemmmme	chr1:228402495-228402797(+)$1	302	181	188	12.5740
:DDDDdd	chr2:242610664-242610947(+)$1	283	6	13	12.3888
EELLLFF	chr3:48732510-48732731(-)$1	221	72	79	11.9259
ennnnne	chr1:55522983-55523211(+)$1	228	33	40	12.6666
=======	chr15:43712643-43712894(-)$1	251	219	226	12.5740
FFFF???	chr19:45648883-45649131(+)$1	248	122	129	12.6666
[ddddoo	chr16:2814484-2814759(+)$1	275	181	188	12.2037
:EEEEEY	chr17:46136099-46136413(+)$1	314	156	163	12.5740
Ecccttt	chr7:150935110-150935365(+)$1	255	94	101	12.2037
LLIIIII	chr22:22893283-22893496(-)$1	213	82	89	12.3888
====eee	chr11:65547129-65547424(-)$1	295	133	140	12.2037
ggggggg	chr16:30536007-30536249(-)$1	242	102	109	12.4814
}DDDD:f	chr19:42703514-42703756(-)$1	242	205	212	12.6666
:ffffff	chr19:46174385-46174653(+)$1	268	127	134	12.0185
FFFALLL	chr5:137681110-137681349(+)$1	239	44	51	12.2962
eeee::A	chr19:59074259-59074515(-)$1	256	122	129	12.4814
:::gggg	chr9:134074240-134074450(+)$1	210	34	41	12.2962
wwwwwww	chr22:42276711-42276930(+)$1	219	69	76	12.2037
bb]ccc7	chr1:15987165-15987409(+)$1	244	175	182	12.3888
gggg::E	chr19:52090155-52090410(+)$1	255	211	218	12.3888
ccc[ccc	chr20:49510151-49510407(-)$1	256	212	219	12.2962
FFFFFFM	chr3:12858319-12858579(+)$1	260	120	127	16.2777
ccmmmmc	chr11:70260576-70260861(+)$1	285	79	86	12.1111

#DB
)))))..	chr12:863302-863552(+)$1	1	79	86	12.3888
(.....(	chr16:30749745-30749986(+)$1	1	65	72	12.2037
((((((.	chr1:160388856-160389167(+)$1	1	77	84	12.6666
.))).((	chr22:23524008-23524212(+)$1	1	69	76	12.4814
((((...	chr18:77895054-77895343(+)$1	1	91	98	12.4814
(.(((((	chr1:40702261-40702505(+)$1	1	98	105	11.6481
..)))).	chr2:27000924-27001216(+)$1	1	248	255	12.0185
)..))..	chr19:30164970-30165209(+)$1	1	144	151	11.7407
.))))..	chr17:43011637-43011886(-)$1	1	140	147	12.2962
(((((.(	chr3:52521688-52521935(+)$1	1	114	121	12.2962
)..((((	chr7:1481866-1482099(-)$1	1	84	91	12.6666
.))))))	chr8:145140034-145140319(+)$1	1	116	123	12.4814
(((((..	chr6:7231978-7232239(+)$1	1	168	175	12.6666
)))))))	chr19:19136675-19136912(-)$1	1	124	131	16.2777
.))))))	chr1:27105790-27106043(+)$1	1	218	225	12.2037
(((((((	chr5:74638390-74638609(+)$1	1	66	73	12.6666
...))))	chr19:15509383-15509639(-)$1	1	231	238	12.6666
.((((..	chr19:41248230-41248485(-)$1	1	47	54	12.6666
.((((.(	chr12:53662934-53663234(+)$1	1	40	47	12.5740
((.((((	chr6:31731088-31731299(+)$1	1	5	12	11.9259
(((...)	chr1:173772268-173772514(-)$1	1	151	158	12.5740
)))))))	chr21:34923006-34923230(+)$1	1	188	195	12.2962
.((((.(	chr22:41832393-41832635(-)$1	1	113	120	12.4814
(((((..	chr9:140611392-140611639(+)$1	1	27	34	12.6666
(....))	chr11:66625247-66625464(+)$1	1	69	76	12.2037
)).....	chr12:57910543-57910809(-)$1	1	245	252	12.6666
(((((((	chr2:170411532-170411776(-)$1	1	183	190	11.7407
.((..(.	chr19:15507926-15508171(-)$1	1	216	223	16.2777
(((.(.(	chr5:179228789-179229065(-)$1	1	5	12	12.2037
((.((((	chr1:19536467-19536692(-)$1	1	107	114	12.6666
(((((.(	chr5:139060508-139060750(+)$1	1	21	28	12.4814
((....)	chr1:228402495-228402797(+)$1	1	181	188	12.5740
.((((((	chr2:242610664-242610947(+)$1	1	6	13	12.3888
((...((	chr3:48732510-48732731(-)$1	1	72	79	11.9259
(.....)	chr1:55522983-55523211(+)$1	1	33	40	12.6666
)))))))	chr15:43712643-43712894(-)$1	1	219	226	12.5740
))))...	chr19:45648883-45649131(+)$1	1	122	129	12.6666
.((((..	chr16:2814484-2814759(+)$1	1	181	188	12.2037
.))))).	chr17:46136099-46136413(+)$1	1	156	163	12.5740
((((...	chr7:150935110-150935365(+)$1	1	94	101	12.2037
..(((((	chr22:22893283-22893496(-)$1	1	82	89	12.3888
)))))))	chr11:65547129-65547424(-)$1	1	133	140	12.2037
(((((((	chr16:30536007-30536249(-)$1	1	102	109	12.4814
.)))).(	chr19:42703514-42703756(-)$1	1	205	212	12.6666
.((((((	chr19:46174385-46174653(+)$1	1	127	134	12.0185
((((...	chr5:137681110-137681349(+)$1	1	44	51	12.2962
))))..(	chr19:59074259-59074515(-)$1	1	122	129	12.4814
...((((	chr9:134074240-134074450(+)$1	1	34	41	12.2962
.......	chr22:42276711-42276930(+)$1	1	69	76	12.2037
)).))).	chr1:15987165-15987409(+)$1	1	175	182	12.3888
))))..)	chr19:52090155-52090410(+)$1	1	211	218	12.3888
(((.(((	chr20:49510151-49510407(-)$1	1	212	219	12.2962
((((((.	chr3:12858319-12858579(+)$1	1	120	127	16.2777
((....)	chr11:70260576-70260861(+)$1	1	79	86	12.1111

#PSSM
U : 0.83	G : 0.12	u : 0.01	C : 0.01	
G : 0.92	A : 0.03	U : 0.01	g : 0.01	
G : 0.87	C : 0.07	A : 0.01	g : 0.01	U : 0.01	
C : 0.87	A : 0.07	G : 0.03	c : 0.01	
C : 0.81	U : 0.09	G : 0.03	A : 0.03	c : 0.01	
A : 0.79	U : 0.09	C : 0.05	G : 0.03	a : 0.01	
C : 0.83	G : 0.05	U : 0.05	A : 0.03	g : 0.01	

#score	679.5555555555547
#seq	54
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_transcript_m2_run1.nuc.txt

#NT
cacccuccugcccc	chr19:14203680-14203912(-)$1	232	194	208	22.1851
CCCACUCCCCACCG	chr1:8420138-8420409(-)$1	271	100	114	18.7592
CCAACUCCUCUCCC	chr16:30734895-30735227(+)$1	332	102	116	21.3518
CCCCCUCCUGGCCC	chr16:50583141-50583412(+)$1	271	70	84	24.4074
UCCACUCCGCCCCC	chr11:2159983-2160192(-)$1	209	78	92	19.6851
CCCCCUUCUCCUCC	chr6:33166919-33167180(-)$1	261	40	54	21.1666
cucccuccuccccc	chr9:127532731-127533005(-)$1	274	35	49	25.9814
cccucaccucuccc	chr7:98740945-98741193(-)$1	248	224	238	21.9074
ccccuuccucaucc	chr17:4793275-4793538(+)$1	263	13	27	20.7037
CCCGCUCCUCCCCU	chr22:38051247-38051502(+)$1	255	85	99	21.4444
CUCCCUUCUCACCC	chr2:242756898-242757240(+)$1	342	48	62	20.8888
cucccuccccagcc	chr11:65168744-65169077(+)$1	333	35	49	18.7592
cccccucuucucuc	chr19:56671802-56672057(+)$1	255	52	66	20.1481
UCCCCUCCAGACCC	chr6:31372305-31372593(+)$1	288	159	173	18.6666
cccucuccuccccu	chr14:21910650-21910935(-)$1	285	6	20	21.9074
CCCCCUCCUCCCUG	chr1:2240867-2241158(+)$1	291	207	221	20.9814
cccccuccgccccc	chr16:188178-188437(-)$1	259	137	151	26.7222
CCCACUCCUUCCCC	chr18:46593605-46593890(-)$1	285	160	174	22.9259
CCCCCGCCUCGCGC	chr1:153894732-153894999(-)$1	267	1	15	19.3148
ucccccccucuccc	chr19:8468925-8469210(+)$1	285	66	80	21.1666
cccccuccucccuc	chr19:56173680-56173987(+)$1	307	57	71	25.2407
UCCCCUCCGCUCCC	chr2:241901793-241902048(-)$1	255	124	138	22.4629
CCCCCUCCGAUCCC	chr16:89362050-89362312(-)$1	262	70	84	22.4629
CCCCAUCCCCACCC	chr16:603143-603402(+)$1	259	145	159	22.0925
cccccgucccaccc	chr18:74829570-74829874(-)$1	304	111	125	17.7407
ccuccuccuccucc	chr17:28256945-28257206(-)$1	261	61	75	21.4444
cccacuccuguccc	chr18:77672009-77672262(-)$1	253	152	166	22.3703
CCCCGUCCUCAGCC	chr19:46283765-46284069(-)$1	304	17	31	20.5185
CCCCCACCUCUCCC	chr7:917111-917420(+)$1	309	135	149	25.1481
CACCCUCCAUACCC	chr20:60899992-60900235(-)$1	243	103	117	18.6666
ACCCCUCCUUGCCC	chr19:42410404-42410721(+)$1	317	182	196	20.2407
CCCCCUCCUUCCCG	chr22:51143639-51143933(+)$1	294	138	152	21.9074
uccccuccccuccc	chr14:76162125-76162434(+)$1	309	21	35	22.6481
ccccuuccucuccc	chrX:133930373-133930796(-)$1	423	153	167	24.7777
ccuccucuuccccc	chr2:288915-289195(+)$1	280	127	141	20.7037
uccccuccuccccc	chrX:153235722-153235991(-)$1	269	93	107	25.7037
CCCCCACCGGCCCC	chr19:46393968-46394216(-)$1	248	108	122	19.4074
cccccuccucaccc	chr20:60892886-60893133(-)$1	247	174	188	28.8518
cucccuccccuccc	chr13:113458029-113458310(+)$1	281	60	74	22.9259
cccccuccacugcc	chr12:31650546-31650822(-)$1	276	5	19	22.0925
cccccuccccuccc	chr15:59574916-59575171(-)$1	255	78	92	26.4444
ccuccuccgucccc	chr7:916581-916835(+)$1	254	144	158	19.2222
CGCCCUCCUCACCC	chr12:57596332-57596560(+)$1	228	108	122	24.9629
cccucuccccaccc	chr3:47459201-47459466(-)$1	265	4	18	23.0185
ccccauccucaccc	chr9:130375183-130375455(+)$1	272	43	57	24.6851
cccccuccucuccc	chr9:37188779-37189114(+)$1	335	81	95	29.0370
CCUCCUCCUCCACC	chr1:1291278-1291535(-)$1	257	112	126	21.1666
cucccuccuccucc	chr9:37206201-37206513(+)$1	312	105	119	22.0925
CCCUCACCUCACCC	chr19:45755395-45755741(+)$1	346	249	263	21.7222
CCCACUCCAUUCCC	chr7:1028788-1029060(+)$1	272	111	125	19.4999
CGCUCCCCUCUCCC	chr9:137314160-137314407(+)$1	247	112	126	17.8333
cucccuccuccccc	chr9:127532805-127533079(-)$1	274	109	123	25.9814
CCCUCUCCUCCCAC	chr16:24942399-24942655(-)$1	256	58	72	21.8148

#otherMatches

#Struct PSSM
^^^^^^^^^^^^^^	chr19:45323340-45323577(+)$1	237	77	91	25.3333
ZJJJJJJJJJJJJJ	chr19:14203680-14203912(-)$1	232	194	208	22.1851
cc!!ddddyyyyyy	chr1:8420138-8420409(-)$1	271	100	114	18.7592
::::::::::::::	chr16:30734895-30735227(+)$1	332	102	116	21.3518
{EEEEE{EEEEEBB	chr16:50583141-50583412(+)$1	271	70	84	24.4074
oooobb]eeeee::	chr11:2159983-2160192(-)$1	209	78	92	19.6851
eee::::::::GGG	chr6:33166919-33167180(-)$1	261	40	54	21.1666
::::::::::::::	chr9:127532731-127533005(-)$1	274	35	49	25.9814
::::::::::::::	chr7:98740945-98741193(-)$1	248	224	238	21.9074
::::::::::::::	chr17:4793275-4793538(+)$1	263	13	27	20.7037
EKKCCC{BB{BBKK	chr22:38051247-38051502(+)$1	255	85	99	21.4444
BLLLHHHHHHHH::	chr2:242756898-242757240(+)$1	342	48	62	20.8888
QQQQQQQQACCC::	chr11:65168744-65169077(+)$1	333	35	49	18.7592
LLLEEEEE{BB{BB	chr19:56671802-56672057(+)$1	255	52	66	20.1481
fffffftttttttt	chr6:31372305-31372593(+)$1	288	159	173	18.6666
::::::::::::::	chr14:21910650-21910935(-)$1	285	6	20	21.9074
eee[aqqqqqqqqa	chr1:2240867-2241158(+)$1	291	207	221	20.9814
dd####cccmmmmc	chr16:188178-188437(-)$1	259	137	151	26.7222
::::::::::::::	chr18:46593605-46593890(-)$1	285	160	174	22.9259
::CCC::::FFFFF	chr1:153894732-153894999(-)$1	267	1	15	19.3148
::::::::::::::	chr19:8468925-8469210(+)$1	285	66	80	21.1666
::::::::::::::	chr19:56173680-56173987(+)$1	307	57	71	25.2407
rrrrrrrrdddddd	chr2:241901793-241902048(-)$1	255	124	138	22.4629
qqqqqqqqccc]a]	chr16:89362050-89362312(-)$1	262	70	84	22.4629
::::::::::::::	chr16:603143-603402(+)$1	259	145	159	22.0925
cmmmmccc::::::	chr18:74829570-74829874(-)$1	304	111	125	17.7407
]dddd:::::::::	chr17:28256945-28257206(-)$1	261	61	75	21.4444
FFFF::::::::::	chr18:77672009-77672262(-)$1	253	152	166	22.3703
:::::::::EEEEE	chr19:46283765-46284069(-)$1	304	17	31	20.5185
::::::::::::::	chr7:917111-917420(+)$1	309	135	149	25.1481
::::::::::::::	chr20:60899992-60900235(-)$1	243	103	117	18.6666
^^^^^^^^^^^^^^	chr19:42410404-42410721(+)$1	317	182	196	20.2407
::FFFFFF::ffff	chr22:51143639-51143933(+)$1	294	138	152	21.9074
::::::::::::::	chr14:76162125-76162434(+)$1	309	21	35	22.6481
::::::::::::::	chrX:133930373-133930796(-)$1	423	153	167	24.7777
::::::::::::::	chr2:288915-289195(+)$1	280	127	141	20.7037
::::::::::::::	chrX:153235722-153235991(-)$1	269	93	107	25.7037
!!aeeeeerrrrrr	chr19:46393968-46394216(-)$1	248	108	122	19.4074
::::::::::::::	chr20:60892886-60893133(-)$1	247	174	188	28.8518
::::::::::::::	chr13:113458029-113458310(+)$1	281	60	74	22.9259
::::::::::::::	chr12:31650546-31650822(-)$1	276	5	19	22.0925
:::::::::::::E	chr15:59574916-59575171(-)$1	255	78	92	26.4444
888888ccc77777	chr7:916581-916835(+)$1	254	144	158	19.2222
nnnneeeee:::::	chr12:57596332-57596560(+)$1	228	108	122	24.9629
::::::::::::::	chr3:47459201-47459466(-)$1	265	4	18	23.0185
::::::::::::::	chr9:130375183-130375455(+)$1	272	43	57	24.6851
::::::::::::::	chr9:37188779-37189114(+)$1	335	81	95	29.0370
::::::::::::::	chr1:1291278-1291535(-)$1	257	112	126	21.1666
::::::::::::::	chr9:37206201-37206513(+)$1	312	105	119	22.0925
ee::::::::::EE	chr19:45755395-45755741(+)$1	346	249	263	21.7222
FFFFFF::::::::	chr7:1028788-1029060(+)$1	272	111	125	19.4999
::::::::::::::	chr9:137314160-137314407(+)$1	247	112	126	17.8333
::::::::::::::	chr9:127532805-127533079(-)$1	274	109	123	25.9814
OOOOOOEEEEE:::	chr16:24942399-24942655(-)$1	256	58	72	21.8148

#DB
..............	chr19:45323340-45323577(+)$1	1	77	91	25.3333
.)))))))))))))	chr19:14203680-14203912(-)$1	1	194	208	22.1851
((..((((......	chr1:8420138-8420409(-)$1	1	100	114	18.7592
..............	chr16:30734895-30735227(+)$1	1	102	116	21.3518
.(((((.(((((((	chr16:50583141-50583412(+)$1	1	70	84	24.4074
....)).)))))..	chr11:2159983-2160192(-)$1	1	78	92	19.6851
)))........(((	chr6:33166919-33167180(-)$1	1	40	54	21.1666
..............	chr9:127532731-127533005(-)$1	1	35	49	25.9814
..............	chr7:98740945-98741193(-)$1	1	224	238	21.9074
..............	chr17:4793275-4793538(+)$1	1	13	27	20.7037
(..(((.((.((..	chr22:38051247-38051502(+)$1	1	85	99	21.4444
(...((((((((..	chr2:242756898-242757240(+)$1	1	48	62	20.8888
........((((..	chr11:65168744-65169077(+)$1	1	35	49	18.7592
...(((((.((.((	chr19:56671802-56672057(+)$1	1	52	66	20.1481
((((((........	chr6:31372305-31372593(+)$1	1	159	173	18.6666
..............	chr14:21910650-21910935(-)$1	1	6	20	21.9074
(((.(........)	chr1:2240867-2241158(+)$1	1	207	221	20.9814
((....(((....)	chr16:188178-188437(-)$1	1	137	151	26.7222
..............	chr18:46593605-46593890(-)$1	1	160	174	22.9259
..(((....(((((	chr1:153894732-153894999(-)$1	1	1	15	19.3148
..............	chr19:8468925-8469210(+)$1	1	66	80	21.1666
..............	chr19:56173680-56173987(+)$1	1	57	71	25.2407
........))))))	chr2:241901793-241902048(-)$1	1	124	138	22.4629
........))).).	chr16:89362050-89362312(-)$1	1	70	84	22.4629
..............	chr16:603143-603402(+)$1	1	145	159	22.0925
(....)))......	chr18:74829570-74829874(-)$1	1	111	125	17.7407
.)))).........	chr17:28256945-28257206(-)$1	1	61	75	21.4444
))))..........	chr18:77672009-77672262(-)$1	1	152	166	22.3703
.........(((((	chr19:46283765-46284069(-)$1	1	17	31	20.5185
..............	chr7:917111-917420(+)$1	1	135	149	25.1481
..............	chr20:60899992-60900235(-)$1	1	103	117	18.6666
..............	chr19:42410404-42410721(+)$1	1	182	196	20.2407
..((((((..((((	chr22:51143639-51143933(+)$1	1	138	152	21.9074
..............	chr14:76162125-76162434(+)$1	1	21	35	22.6481
..............	chrX:133930373-133930796(-)$1	1	153	167	24.7777
..............	chr2:288915-289195(+)$1	1	127	141	20.7037
..............	chrX:153235722-153235991(-)$1	1	93	107	25.7037
..((((((......	chr19:46393968-46394216(-)$1	1	108	122	19.4074
..............	chr20:60892886-60893133(-)$1	1	174	188	28.8518
..............	chr13:113458029-113458310(+)$1	1	60	74	22.9259
..............	chr12:31650546-31650822(-)$1	1	5	19	22.0925
.............(	chr15:59574916-59575171(-)$1	1	78	92	26.4444
......))).....	chr7:916581-916835(+)$1	1	144	158	19.2222
....))))).....	chr12:57596332-57596560(+)$1	1	108	122	24.9629
..............	chr3:47459201-47459466(-)$1	1	4	18	23.0185
..............	chr9:130375183-130375455(+)$1	1	43	57	24.6851
..............	chr9:37188779-37189114(+)$1	1	81	95	29.0370
..............	chr1:1291278-1291535(-)$1	1	112	126	21.1666
..............	chr9:37206201-37206513(+)$1	1	105	119	22.0925
))..........))	chr19:45755395-45755741(+)$1	1	249	263	21.7222
))))))........	chr7:1028788-1029060(+)$1	1	111	125	19.4999
..............	chr9:137314160-137314407(+)$1	1	112	126	17.8333
..............	chr9:127532805-127533079(-)$1	1	109	123	25.9814
......(((((...	chr16:24942399-24942655(-)$1	1	58	72	21.8148

#PSSM
c : 0.46	C : 0.40	U : 0.05	u : 0.05	A : 0.01	
c : 0.40	C : 0.40	u : 0.09	G : 0.03	a : 0.01	U : 0.01	A : 0.01	
c : 0.46	C : 0.44	u : 0.05	A : 0.01	U : 0.01	
c : 0.44	C : 0.31	A : 0.09	u : 0.05	U : 0.05	G : 0.01	a : 0.01	
c : 0.44	C : 0.44	a : 0.03	u : 0.03	A : 0.01	G : 0.01	
u : 0.46	U : 0.38	A : 0.05	a : 0.01	G : 0.01	c : 0.01	g : 0.01	C : 0.01	
c : 0.49	C : 0.44	U : 0.03	u : 0.01	
c : 0.48	C : 0.48	u : 0.03	
u : 0.35	U : 0.31	c : 0.11	G : 0.07	A : 0.05	C : 0.03	g : 0.03	a : 0.01	
c : 0.46	C : 0.31	U : 0.09	G : 0.05	g : 0.03	A : 0.01	u : 0.01	
c : 0.22	u : 0.18	C : 0.16	A : 0.14	U : 0.11	a : 0.11	G : 0.05	
c : 0.42	C : 0.42	u : 0.05	g : 0.03	U : 0.01	G : 0.01	A : 0.01	
c : 0.48	C : 0.42	u : 0.03	U : 0.01	G : 0.01	A : 0.01	
c : 0.49	C : 0.40	G : 0.05	U : 0.01	u : 0.01	

#score	1199.2962962962956
#seq	54
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_transcript_m3_run2.nuc.txt

#NT
AUGUAUGUGUG	chr10:102123385-102123635(+)$1	250	65	76	21.3000
GUGUGUAUGUG	chr7:127450228-127450557(+)$1	329	131	142	24.1000
Cugugugugcg	chr1:165869825-165870141(+)$1	316	111	122	21.7000
CUGUGUGUGUG	chr14:103244804-103245105(+)$1	301	129	140	26.3000
guguguguguc	chr6:160402176-160402461(+)$1	285	150	161	24.3000
GUAUGUGUGUG	chr6:157713622-157713875(-)$1	253	100	111	24.1000
guuugugugug	chr10:3153408-3153649(+)$1	241	69	80	24.0000
augugugugcg	chr8:144689815-144690105(-)$1	290	242	253	21.3000
gagugugugug	chr5:613125-613471(+)$1	346	139	150	23.7000
CUGUGAGUGUG	chr11:73088141-73088476(+)$1	335	78	89	21.7000
uugugugugug	chr20:45885852-45886146(-)$1	294	127	138	25.9000
gugugugucug	chr2:99087522-99087832(+)$1	310	132	143	24.1000
GUGCGUGUGUG	chr11:2983080-2983374(-)$1	294	143	154	23.7000
uugugagugug	chr7:53844465-53844759(-)$1	294	127	138	21.3000
gugugugugug	chr21:38835380-38835677(+)$1	297	96	107	28.5000
GUGUGUGUGUG	chr11:13741730-13742008(+)$1	278	101	112	28.5000
AUCUGUGUGUG	chr22:24498047-24498309(+)$1	262	99	110	21.4000
gugugugugug	chr22:49842797-49843056(-)$1	259	0	11	28.5000
GUGUGUGUGUG	chr1:235397796-235398072(-)$1	276	122	133	28.5000
guguguaugug	chr8:676553-676830(-)$1	277	46	57	24.1000
cugugugugug	chr1:61662486-61662795(+)$1	309	137	148	26.3000
gugugugugug	chr15:27596082-27596405(+)$1	323	117	128	28.5000
gugugugugug	chr8:130984715-130985126(-)$1	411	106	117	28.5000
GUGUGUGUGUG	chr11:8705101-8705384(+)$1	283	136	147	28.5000
gugugugcgug	chr5:145078805-145079072(-)$1	267	100	111	23.7000
guaugugugug	chr9:5699193-5699475(+)$1	282	124	135	24.1000
GUGUGUGUGUG	chr6:170059521-170059847(-)$1	326	25	36	28.5000
GUGUGUGUGUG	chr8:130390138-130390428(-)$1	290	127	138	28.5000
GUGUGUGUCUG	chr7:97933636-97933935(-)$1	299	102	113	24.1000
UUGUGUGUUUG	chr16:23911534-23911812(+)$1	278	94	105	21.5000
augugugugug	chr19:28994930-28995153(-)$1	223	206	217	25.9000
uugugugugug	chr22:19804072-19804339(-)$1	267	103	114	25.9000
GUGUGUGUGUG	chr4:2756756-2757115(-)$1	359	190	201	28.5000
CUGUAUGUGUG	chr11:46315445-46315733(+)$1	288	84	95	21.7000
gugugugugug	chr8:140842435-140842807(-)$1	372	317	328	28.5000
CUGUGUGUGUG	chr21:44268891-44269131(-)$1	240	143	154	26.3000
GUGUGUGUGUG	chr6:111058554-111058845(-)$1	291	147	158	28.5000
guguguguguu	chr1:117997854-117998144(+)$1	290	121	132	24.4000
gugugugugug	chr2:87774754-87775017(+)$1	263	139	150	28.5000
GUGUGUGUGUU	chr3:38065090-38065471(-)$1	381	305	316	24.4000
guguguguguu	chr2:48131521-48131843(-)$1	322	137	148	24.4000
uuguguguUUG	chr12:133108036-133108351(+)$1	315	141	152	21.5000
cugugugugua	chr16:29679216-29679455(+)$1	239	50	61	22.0000
gugugugugug	chr16:84612267-84612525(-)$1	258	231	242	28.5000
cugugugugug	chr9:94667046-94667389(-)$1	343	174	185	26.3000
gugugugugug	chr9:27327402-27327682(-)$1	280	119	130	28.5000
guguguaugug	chr8:2567191-2567541(-)$1	350	0	11	24.1000
GUGUGUGUGUG	chr19:48223721-48223979(+)$1	258	110	121	28.5000
CUGUGUGUGUC	chr9:126169495-126169891(-)$1	396	104	115	22.1000

#otherMatches

#Struct PSSM
=========]d	chr6:35562242-35562522(-)$1	280	112	123	25.9000
F{CCCeeeee[	chr10:102123385-102123635(+)$1	250	65	76	21.3000
fffffbb!!bb	chr7:127450228-127450557(+)$1	329	131	142	24.1000
hlllhhhhhhh	chr1:165869825-165870141(+)$1	316	111	122	21.7000
H{CCC{EEEEE	chr14:103244804-103245105(+)$1	301	129	140	26.3000
66666ccc]cc	chr6:160402176-160402461(+)$1	285	150	161	24.3000
c4444bb]ddd	chr6:157713622-157713875(-)$1	253	100	111	24.1000
ggg666666dd	chr10:3153408-3153649(+)$1	241	69	80	24.0000
=======]eee	chr8:144689815-144690105(-)$1	290	242	253	21.3000
ff22bb::BB{	chr5:613125-613471(+)$1	346	139	150	23.7000
dpppppppddd	chr11:73088141-73088476(+)$1	335	78	89	21.7000
ssssssssssd	chr20:45885852-45886146(-)$1	294	127	138	25.9000
::::::hhhhh	chr2:99087522-99087832(+)$1	310	132	143	24.1000
""bb[ccc[ii	chr11:2983080-2983374(-)$1	294	143	154	23.7000
HHHHHHHHHHH	chr7:53844465-53844759(-)$1	294	127	138	21.3000
DDDKKFFFFFF	chr21:38835380-38835677(+)$1	297	96	107	28.5000
ffff!!ggggg	chr11:13741730-13742008(+)$1	278	101	112	28.5000
pddddCCCYYE	chr22:24498047-24498309(+)$1	262	99	110	21.4000
::::::::===	chr22:49842797-49843056(-)$1	259	0	11	28.5000
d]bb::eeeee	chr1:235397796-235398072(-)$1	276	122	133	28.5000
55555======	chr8:676553-676830(-)$1	277	46	57	24.1000
=gggggggnnn	chr1:61662486-61662795(+)$1	309	137	148	26.3000
[ddddqqqqqq	chr15:27596082-27596405(+)$1	323	117	128	28.5000
iiiii]a]ggg	chr8:130984715-130985126(-)$1	411	106	117	28.5000
======]a555	chr11:8705101-8705384(+)$1	283	136	147	28.5000
KKDDDDddddn	chr5:145078805-145079072(-)$1	267	100	111	23.7000
ff####bb!!d	chr9:5699193-5699475(+)$1	282	124	135	24.1000
CC{CCCGGGGG	chr6:170059521-170059847(-)$1	326	25	36	28.5000
dddd[a[dddd	chr8:130390138-130390428(-)$1	290	127	138	28.5000
ppggggggg:D	chr7:97933636-97933935(-)$1	299	102	113	24.1000
TTTTTDDDD{D	chr16:23911534-23911812(+)$1	278	94	105	21.5000
mggggggg]gg	chr19:28994930-28995153(-)$1	223	206	217	25.9000
ffffff]eeee	chr22:19804072-19804339(-)$1	267	103	114	25.9000
iiiiiiiiimm	chr4:2756756-2757115(-)$1	359	190	201	28.5000
:CCC{FFFFFF	chr11:46315445-46315733(+)$1	288	84	95	21.7000
J:::::::::=	chr8:140842435-140842807(-)$1	372	317	328	28.5000
ennnnneeeee	chr21:44268891-44269131(-)$1	240	143	154	26.3000
bb!!ccc[fff	chr6:111058554-111058845(-)$1	291	147	158	28.5000
cc]hhhhhhhh	chr1:117997854-117998144(+)$1	290	121	132	24.4000
mmmmhhhhhhh	chr2:87774754-87775017(+)$1	263	139	150	28.5000
FFFFYYJJJJJ	chr3:38065090-38065471(-)$1	381	305	316	24.4000
dddd####ddd	chr2:48131521-48131843(-)$1	322	137	148	24.4000
\\\\\\\FFFF	chr12:133108036-133108351(+)$1	315	141	152	21.5000
qqqqq======	chr16:29679216-29679455(+)$1	239	50	61	22.0000
ooooa]fffff	chr16:84612267-84612525(-)$1	258	231	242	28.5000
eeeeggggggg	chr9:94667046-94667389(-)$1	343	174	185	26.3000
ffff!!ccc""	chr9:27327402-27327682(-)$1	280	119	130	28.5000
::::eeeeeoo	chr8:2567191-2567541(-)$1	350	0	11	24.1000
f]ggggggg]a	chr19:48223721-48223979(+)$1	258	110	121	28.5000
h]dddd>>>>>	chr9:126169495-126169891(-)$1	396	104	115	22.1000

#DB
))))))))).)	chr6:35562242-35562522(-)$1	1	112	123	25.9000
(.((((((((.	chr10:102123385-102123635(+)$1	1	65	76	21.3000
(((((((..((	chr7:127450228-127450557(+)$1	1	131	142	24.1000
(...)))))))	chr1:165869825-165870141(+)$1	1	111	122	21.7000
(.(((.(((((	chr14:103244804-103245105(+)$1	1	129	140	26.3000
.....))).))	chr6:160402176-160402461(+)$1	1	150	161	24.3000
)....)).)))	chr6:157713622-157713875(-)$1	1	100	111	24.1000
)))......))	chr10:3153408-3153649(+)$1	1	69	80	24.0000
))))))).)))	chr8:144689815-144690105(-)$1	1	242	253	21.3000
))..))..((.	chr5:613125-613471(+)$1	1	139	150	23.7000
(.......)))	chr11:73088141-73088476(+)$1	1	78	89	21.7000
..........)	chr20:45885852-45886146(-)$1	1	127	138	25.9000
......(((((	chr2:99087522-99087832(+)$1	1	132	143	24.1000
..((.(((.((	chr11:2983080-2983374(-)$1	1	143	154	23.7000
(((((((((((	chr7:53844465-53844759(-)$1	1	127	138	21.3000
(((..((((((	chr21:38835380-38835677(+)$1	1	96	107	28.5000
((((..(((((	chr11:13741730-13742008(+)$1	1	101	112	28.5000
.)))))))..)	chr22:24498047-24498309(+)$1	1	99	110	21.4000
........(((	chr22:49842797-49843056(-)$1	1	0	11	28.5000
).))..(((((	chr1:235397796-235398072(-)$1	1	122	133	28.5000
.....))))))	chr8:676553-676830(-)$1	1	46	57	24.1000
)(((((((...	chr1:61662486-61662795(+)$1	1	137	148	26.3000
.((((......	chr15:27596082-27596405(+)$1	1	117	128	28.5000
))))).).)))	chr8:130984715-130985126(-)$1	1	106	117	28.5000
)))))).)...	chr11:8705101-8705384(+)$1	1	136	147	28.5000
..((((((((.	chr5:145078805-145079072(-)$1	1	100	111	23.7000
((....((..(	chr9:5699193-5699475(+)$1	1	124	135	24.1000
((.((((((((	chr6:170059521-170059847(-)$1	1	25	36	28.5000
((((.(.((((	chr8:130390138-130390428(-)$1	1	127	138	28.5000
..))))))).)	chr7:97933636-97933935(-)$1	1	102	113	24.1000
.....((((.(	chr16:23911534-23911812(+)$1	1	94	105	21.5000
.))))))).))	chr19:28994930-28995153(-)$1	1	206	217	25.9000
)))))).))))	chr22:19804072-19804339(-)$1	1	103	114	25.9000
(((((((((..	chr4:2756756-2757115(-)$1	1	190	201	28.5000
.(((.((((((	chr11:46315445-46315733(+)$1	1	84	95	21.7000
).........(	chr8:140842435-140842807(-)$1	1	317	328	28.5000
(.....)))))	chr21:44268891-44269131(-)$1	1	143	154	26.3000
((..(((.(((	chr6:111058554-111058845(-)$1	1	147	158	28.5000
)).))))))))	chr1:117997854-117998144(+)$1	1	121	132	24.4000
....)))))))	chr2:87774754-87775017(+)$1	1	139	150	28.5000
))))..)))))	chr3:38065090-38065471(-)$1	1	305	316	24.4000
((((....(((	chr2:48131521-48131843(-)$1	1	137	148	24.4000
.......))))	chr12:133108036-133108351(+)$1	1	141	152	21.5000
.....))))))	chr16:29679216-29679455(+)$1	1	50	61	22.0000
....).)))))	chr16:84612267-84612525(-)$1	1	231	242	28.5000
(((((((((((	chr9:94667046-94667389(-)$1	1	174	185	26.3000
((((..(((..	chr9:27327402-27327682(-)$1	1	119	130	28.5000
....(((((..	chr8:2567191-2567541(-)$1	1	0	11	24.1000
).))))))).)	chr19:48223721-48223979(+)$1	1	110	121	28.5000
).)))).....	chr9:126169495-126169891(-)$1	1	104	115	22.1000

#PSSM
g : 0.36	G : 0.25	C : 0.12	u : 0.08	a : 0.06	c : 0.06	A : 0.04	U : 0.02	
u : 0.56	U : 0.42	a : 0.02	
g : 0.54	G : 0.38	A : 0.02	u : 0.02	C : 0.02	a : 0.02	
u : 0.58	U : 0.40	C : 0.02	
g : 0.58	G : 0.38	A : 0.04	
u : 0.56	U : 0.40	A : 0.02	a : 0.02	
g : 0.54	G : 0.40	a : 0.04	A : 0.02	
u : 0.56	U : 0.42	c : 0.02	
g : 0.54	G : 0.38	U : 0.04	c : 0.02	C : 0.02	
u : 0.52	U : 0.44	c : 0.04	
g : 0.48	G : 0.40	u : 0.04	c : 0.02	U : 0.02	a : 0.02	C : 0.02	

#score	1263.6000000000004
#seq	50
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_CDS_m1_run1.nuc.txt

#NT
UGUUUAUCU	chr2:178081392-178081637(+)$1	245	113	122	14.0192
UUUUUCUCU	chr4:155533443-155533684(-)$1	241	83	92	20.5576
UUUUUCUCU	chr4:74269934-74270160(+)$1	226	138	147	20.5576
UUUUUCUUA	chr5:42804679-42804959(-)$1	280	74	83	13.8269
UUUUUCUCU	chr4:155533484-155533688(-)$1	204	87	96	20.5576
UUUUUCUUU	chr17:37009849-37010080(-)$1	231	93	102	18.4423
UUCUUCUCU	chr18:56008909-56009166(+)$1	257	174	183	15.8461
CCUUUCUCU	chr3:120363158-120363400(-)$1	242	31	40	14.1153
GCUUUCUCU	chr2:21229568-21229811(-)$1	243	13	22	13.9230
UUUCUCUCU	chr2:21230223-21230447(-)$1	224	154	163	16.0384
UGUUUCUCU	chr17:64208129-64208389(-)$1	260	44	53	17.1923
uuuuuguuu	chr17:19481208-19481459(+)$1	251	80	89	14.9807
UUUUUUUUU	chr3:42660490-42660771(+)$1	281	0	9	15.0769
UUUUUGUUU	chr4:74303802-74304009(+)$1	207	76	85	14.9807
uuuuuuucu	chr19:18390715-18390967(-)$1	252	97	106	17.1923
UUUUUCUCU	chr4:74269976-74270185(+)$1	209	96	105	20.5576
UUUGUCUCU	chr12:69746910-69747124(+)$1	214	116	125	16.2307
GCUUUCUCU	chr2:21229611-21229852(-)$1	241	54	63	13.9230
UUUUUCUUU	chr4:74275015-74275235(+)$1	220	35	44	18.4423
UUUUUUUCU	chr3:171851280-171851536(+)$1	256	91	100	17.1923
UAUUUCUCU	chr4:74321237-74321469(+)$1	232	22	31	17.0961
UUUUUCCCU	chr16:67174374-67174620(+)$1	246	26	35	15.8461
UCUUUAUCU	chr4:74320875-74321097(+)$1	222	43	52	14.2115
UUUUUAUUU	chr15:69745949-69746160(+)$1	211	20	29	15.2692
UUUUACUUU	chr2:242276811-242277094(+)$1	283	91	100	13.8269
CUUUUCUCU	chr4:74321269-74321504(+)$1	235	117	126	17.2884
CUUUUCUCU	chr4:74301924-74302163(+)$1	239	165	174	17.2884
UUUUUCUCC	chr1:151237594-151237846(+)$1	252	26	35	16.0384
UUUUGCUUU	chr6:99852276-99852575(-)$1	299	117	126	13.8269
UUUGUCUCU	chr12:69746924-69747141(+)$1	217	102	111	16.2307
UUUUUCUUU	chr6:26217065-26217332(+)$1	267	87	96	18.4423
UUUUUGUUU	chr4:74303809-74304055(+)$1	246	69	78	14.9807
UGUUUAUCU	chr16:84214610-84214864(-)$1	254	58	67	14.0192
UUUUUCUCU	chr4:155533583-155533805(-)$1	222	204	213	20.5576
UUUUUCUCU	chr4:74269990-74270210(+)$1	220	82	91	20.5576
CAUUUCUCU	chr10:102710393-102710655(+)$1	262	25	34	13.8269
UUUUUCUUU	chr4:74275009-74275215(+)$1	206	41	50	18.4423
UCUUUAUCU	chr4:74320867-74321075(+)$1	208	51	60	14.2115
UUUUUAUCU	chr10:114154622-114154875(+)$1	253	86	95	17.3846
CUUUCCUCU	chr19:9940575-9940842(+)$1	267	135	144	12.6730
UUUUUCUCU	chr4:74269985-74270190(+)$1	205	87	96	20.5576
GCUUUCUCU	chr2:21229662-21229873(-)$1	211	75	84	13.9230
CUUUUCUCU	chr4:74321304-74321535(+)$1	231	82	91	17.2884
UUUUUCUCC	chr2:223773511-223773765(+)$1	254	105	114	16.0384
UAUUUCUCU	chr12:46760949-46761202(-)$1	253	201	210	17.0961
GUUUUCUUU	chr12:46757660-46757886(-)$1	226	88	97	14.9807
UUGUUCUCU	chr10:98292733-98293011(-)$1	278	24	33	15.8461
UUUGUCUCU	chr12:69746941-69747191(+)$1	250	85	94	16.2307
AGUUUCUCU	chr3:149089428-149089676(-)$1	248	1	10	13.5384
AUUUUCUCU	chr12:46757419-46757648(-)$1	229	18	27	16.9038
UUUUUUUUU	chr2:118854005-118854250(+)$1	245	89	98	15.0769

#otherMatches

#Struct PSSM
EEEFFFFFF	chr17:57917077-57917349(+)$1	272	16	25	13.7307
ffff"""ff	chr2:178081392-178081637(+)$1	245	113	122	14.0192
3ffffff::	chr4:155533443-155533684(-)$1	241	83	92	20.5576
:::::::::	chr4:74269934-74270160(+)$1	226	138	147	20.5576
bffffff::	chr5:42804679-42804959(-)$1	280	74	83	13.8269
3ffffffee	chr4:155533484-155533688(-)$1	204	87	96	20.5576
dd"""ccc$	chr17:37009849-37010080(-)$1	231	93	102	18.4423
?FFFFFF::	chr18:56008909-56009166(+)$1	257	174	183	15.8461
lleeeee]f	chr3:120363158-120363400(-)$1	242	31	40	14.1153
coooooocc	chr2:21229568-21229811(-)$1	243	13	22	13.9230
ffffffnnn	chr2:21230223-21230447(-)$1	224	154	163	16.0384
mffffff44	chr17:64208129-64208389(-)$1	260	44	53	17.1923
hhhhhhhhd	chr17:19481208-19481459(+)$1	251	80	89	14.9807
:::======	chr3:42660490-42660771(+)$1	281	0	9	15.0769
ddggggggg	chr4:74303802-74304009(+)$1	207	76	85	14.9807
========m	chr19:18390715-18390967(-)$1	252	97	106	17.1923
^^^^^^^^^	chr4:74269976-74270185(+)$1	209	96	105	20.5576
HHHHHffff	chr12:69746910-69747124(+)$1	214	116	125	16.2307
coooooocc	chr2:21229611-21229852(-)$1	241	54	63	13.9230
ggggga!!e	chr4:74275015-74275235(+)$1	220	35	44	18.4423
i]dddd:hh	chr3:171851280-171851536(+)$1	256	91	100	17.1923
eeee"""ee	chr4:74321237-74321469(+)$1	232	22	31	17.0961
tttttttcc	chr16:67174374-67174620(+)$1	246	26	35	15.8461
NNGGGGGGG	chr4:74320875-74321097(+)$1	222	43	52	14.2115
"hhhhhhhh	chr15:69745949-69746160(+)$1	211	20	29	15.2692
JJ:::::ff	chr2:242276811-242277094(+)$1	283	91	100	13.8269
3========	chr4:74321269-74321504(+)$1	235	117	126	17.2884
+++++++++	chr4:74301924-74302163(+)$1	239	165	174	17.2884
OOOOOEEEE	chr1:151237594-151237846(+)$1	252	26	35	16.0384
44ggggggg	chr6:99852276-99852575(-)$1	299	117	126	13.8269
HHHHHbbee	chr12:69746924-69747141(+)$1	217	102	111	16.2307
:::::::::	chr6:26217065-26217332(+)$1	267	87	96	18.4423
FFFFFF:::	chr4:74303809-74304055(+)$1	246	69	78	14.9807
[aqqqqqqq	chr16:84214610-84214864(-)$1	254	58	67	14.0192
:::::::::	chr4:155533583-155533805(-)$1	222	204	213	20.5576
^^^^^^^^^	chr4:74269990-74270210(+)$1	220	82	91	20.5576
JJJJJJBB:	chr10:102710393-102710655(+)$1	262	25	34	13.8269
ggggga!!e	chr4:74275009-74275215(+)$1	206	41	50	18.4423
:::::DDDD	chr4:74320867-74321075(+)$1	208	51	60	14.2115
nnnnggggg	chr10:114154622-114154875(+)$1	253	86	95	17.3846
GGYYFFFFF	chr19:9940575-9940842(+)$1	267	135	144	12.6730
:::::::::	chr4:74269985-74270190(+)$1	205	87	96	20.5576
coooooocc	chr2:21229662-21229873(-)$1	211	75	84	13.9230
3========	chr4:74321304-74321535(+)$1	231	82	91	17.2884
ggggg[bbq	chr2:223773511-223773765(+)$1	254	105	114	16.0384
dddd88888	chr12:46760949-46761202(-)$1	253	201	210	17.0961
4444ccc44	chr12:46757660-46757886(-)$1	226	88	97	14.9807
gggggglll	chr10:98292733-98293011(-)$1	278	24	33	15.8461
eee!!ffff	chr12:69746941-69747191(+)$1	250	85	94	16.2307
:::::::::	chr3:149089428-149089676(-)$1	248	1	10	13.5384
:::::::::	chr12:46757419-46757648(-)$1	229	18	27	16.9038
:::::::::	chr2:118854005-118854250(+)$1	245	89	98	15.0769

#DB
(((((((((	chr17:57917077-57917349(+)$1	1	16	25	13.7307
((((...((	chr2:178081392-178081637(+)$1	1	113	122	14.0192
.))))))..	chr4:155533443-155533684(-)$1	1	83	92	20.5576
.........	chr4:74269934-74270160(+)$1	1	138	147	20.5576
)))))))..	chr5:42804679-42804959(-)$1	1	74	83	13.8269
.))))))))	chr4:155533484-155533688(-)$1	1	87	96	20.5576
((...(((.	chr17:37009849-37010080(-)$1	1	93	102	18.4423
.))))))..	chr18:56008909-56009166(+)$1	1	174	183	15.8461
..))))).)	chr3:120363158-120363400(-)$1	1	31	40	14.1153
(......))	chr2:21229568-21229811(-)$1	1	13	22	13.9230
((((((...	chr2:21230223-21230447(-)$1	1	154	163	16.0384
.))))))..	chr17:64208129-64208389(-)$1	1	44	53	17.1923
(((((((((	chr17:19481208-19481459(+)$1	1	80	89	14.9807
...((((((	chr3:42660490-42660771(+)$1	1	0	9	15.0769
)))))))))	chr4:74303802-74304009(+)$1	1	76	85	14.9807
((((((((.	chr19:18390715-18390967(-)$1	1	97	106	17.1923
.........	chr4:74269976-74270185(+)$1	1	96	105	20.5576
)))))((((	chr12:69746910-69747124(+)$1	1	116	125	16.2307
(......))	chr2:21229611-21229852(-)$1	1	54	63	13.9230
((((((..(	chr4:74275015-74275235(+)$1	1	35	44	18.4423
).)))).((	chr3:171851280-171851536(+)$1	1	91	100	17.1923
((((...((	chr4:74321237-74321469(+)$1	1	22	31	17.0961
.......))	chr16:67174374-67174620(+)$1	1	26	35	15.8461
..(((((((	chr4:74320875-74321097(+)$1	1	43	52	14.2115
.((((((((	chr15:69745949-69746160(+)$1	1	20	29	15.2692
((.....((	chr2:242276811-242277094(+)$1	1	91	100	13.8269
.))))))))	chr4:74321269-74321504(+)$1	1	117	126	17.2884
.........	chr4:74301924-74302163(+)$1	1	165	174	17.2884
.....((((	chr1:151237594-151237846(+)$1	1	26	35	16.0384
..)))))))	chr6:99852276-99852575(-)$1	1	117	126	13.8269
)))))((((	chr12:69746924-69747141(+)$1	1	102	111	16.2307
.........	chr6:26217065-26217332(+)$1	1	87	96	18.4423
((((((...	chr4:74303809-74304055(+)$1	1	69	78	14.9807
.(.......	chr16:84214610-84214864(-)$1	1	58	67	14.0192
.........	chr4:155533583-155533805(-)$1	1	204	213	20.5576
.........	chr4:74269990-74270210(+)$1	1	82	91	20.5576
((((((((.	chr10:102710393-102710655(+)$1	1	25	34	13.8269
((((((..(	chr4:74275009-74275215(+)$1	1	41	50	18.4423
.....((((	chr4:74320867-74321075(+)$1	1	51	60	14.2115
....)))))	chr10:114154622-114154875(+)$1	1	86	95	17.3846
))..)))))	chr19:9940575-9940842(+)$1	1	135	144	12.6730
.........	chr4:74269985-74270190(+)$1	1	87	96	20.5576
(......))	chr2:21229662-21229873(-)$1	1	75	84	13.9230
.))))))))	chr4:74321304-74321535(+)$1	1	82	91	17.2884
(((((.((.	chr2:223773511-223773765(+)$1	1	105	114	16.0384
)))).....	chr12:46760949-46761202(-)$1	1	201	210	17.0961
....)))..	chr12:46757660-46757886(-)$1	1	88	97	14.9807
((((((...	chr10:98292733-98293011(-)$1	1	24	33	15.8461
(((..((((	chr12:69746941-69747191(+)$1	1	85	94	16.2307
.........	chr3:149089428-149089676(-)$1	1	1	10	13.5384
.........	chr12:46757419-46757648(-)$1	1	18	27	16.9038
.........	chr2:118854005-118854250(+)$1	1	89	98	15.0769

#PSSM
U : 0.73	C : 0.11	G : 0.07	u : 0.03	A : 0.03	
U : 0.71	C : 0.11	G : 0.07	A : 0.05	u : 0.03	
U : 0.92	u : 0.03	C : 0.01	G : 0.01	
U : 0.88	G : 0.05	u : 0.03	C : 0.01	
U : 0.90	u : 0.03	A : 0.01	G : 0.01	C : 0.01	
C : 0.75	A : 0.11	U : 0.05	G : 0.03	g : 0.01	u : 0.01	
U : 0.92	u : 0.03	A : 0.01	C : 0.01	
C : 0.69	U : 0.26	u : 0.01	c : 0.01	
U : 0.90	u : 0.03	C : 0.03	A : 0.01	

#score	846.884615384616
#seq	52
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_UTR_m1_run2.nuc.txt

#NT
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2153010-2153215(-)$1	205	65	133	147.4210
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152766-2152968(-)$1	202	103	171	153.0789
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153241-2153446(-)$1	205	123	191	142.2894
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152682-2152888(-)$1	206	23	91	153.0789
gacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacaca	chr11:2152812-2153015(-)$1	203	15	83	133.9342
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153161-2153364(-)$1	203	41	109	142.2894
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152693-2152895(-)$1	202	30	98	153.0789
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152674-2152876(-)$1	202	11	79	153.0789
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153166-2153371(-)$1	205	48	116	142.2894
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2153070-2153275(-)$1	205	125	193	147.4210
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152663-2152865(-)$1	202	0	68	153.0789
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153155-2153357(-)$1	202	34	102	142.2894
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153191-2153396(-)$1	205	73	141	142.2894
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152670-2152872(-)$1	202	7	75	153.0789
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152695-2152898(-)$1	203	33	101	153.0789
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2153003-2153205(-)$1	202	55	123	147.4210
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152729-2152935(-)$1	206	70	138	153.0789
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152785-2152987(-)$1	202	122	190	153.0789
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2153025-2153231(-)$1	206	81	149	147.4210
gacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacaca	chr11:2152885-2153101(-)$1	216	101	169	133.9342
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152698-2152905(-)$1	207	40	108	153.0789
gacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacaca	chr11:2152902-2153114(-)$1	212	114	182	133.9342
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152723-2152925(-)$1	202	60	128	153.0789
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153140-2153343(-)$1	203	20	88	142.2894
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153143-2153348(-)$1	205	25	93	142.2894
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152776-2152980(-)$1	204	115	183	153.0789
gacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacaca	chr11:2152861-2153066(-)$1	205	66	134	133.9342
gacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacaca	chr11:2152853-2153056(-)$1	203	56	124	133.9342
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152667-2152870(-)$1	203	5	73	153.0789
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153159-2153361(-)$1	202	38	106	142.2894
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152672-2152874(-)$1	202	9	77	153.0789
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152705-2152908(-)$1	203	43	111	153.0789
gacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacaca	chr11:2152881-2153085(-)$1	204	85	153	133.9342
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153202-2153405(-)$1	203	82	150	142.2894
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153125-2153331(-)$1	206	8	76	142.2894
gacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacaca	chr11:2152804-2153006(-)$1	202	6	74	133.9342
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152789-2152993(-)$1	204	128	196	153.0789
gacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacaca	chr11:2152815-2153017(-)$1	202	17	85	133.9342
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2152999-2153201(-)$1	202	51	119	147.4210
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153164-2153366(-)$1	202	43	111	142.2894
gacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacaca	chr11:2152800-2153002(-)$1	202	2	70	133.9342
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153157-2153359(-)$1	202	36	104	142.2894
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2152979-2153182(-)$1	203	32	100	147.4210
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153224-2153427(-)$1	203	104	172	142.2894
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153238-2153441(-)$1	203	118	186	142.2894
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153176-2153378(-)$1	202	55	123	142.2894
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2153015-2153220(-)$1	205	70	138	147.4210
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153209-2153412(-)$1	203	89	157	142.2894
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152717-2152923(-)$1	206	58	126	153.0789
gacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacaca	chr11:2152838-2153042(-)$1	204	42	110	133.9342
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152793-2153000(-)$1	207	135	203	153.0789
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2153080-2153285(-)$1	205	135	203	147.4210
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152688-2152893(-)$1	205	28	96	153.0789
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153189-2153391(-)$1	202	68	136	142.2894
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2152984-2153186(-)$1	202	36	104	147.4210
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152780-2152983(-)$1	203	118	186	153.0789
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153183-2153386(-)$1	203	63	131	142.2894
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2153008-2153210(-)$1	202	60	128	147.4210
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153214-2153417(-)$1	203	94	162	142.2894
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153200-2153402(-)$1	202	79	147	142.2894
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152783-2152985(-)$1	202	120	188	153.0789
gacacagcacacacaugcacacacagcacacacacgcgaacacagcacacacgaacacagcacacaca	chr11:2152858-2153061(-)$1	203	61	129	133.9342
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2153032-2153236(-)$1	204	86	154	147.4210
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153232-2153436(-)$1	204	113	181	142.2894
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153178-2153380(-)$1	202	57	125	142.2894
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2152966-2153167(-)$1	201	17	85	147.4210
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152708-2152910(-)$1	202	45	113	153.0789
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2153020-2153222(-)$1	202	72	140	147.4210
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152735-2152941(-)$1	206	76	144	153.0789
cacacagcacacacacaaacgcacagcacacacaaacgcacagcacacacgcacacacagcacacaca	chr11:2153022-2153225(-)$1	203	75	143	147.4210
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152787-2152989(-)$1	202	124	192	153.0789
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152725-2152929(-)$1	204	64	132	153.0789
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152741-2152954(-)$1	213	89	157	153.0789
cacacagcacacacaugcacacacagcacacacgcaugcacagcacacaugaacacagcacacacaca	chr11:2152756-2152961(-)$1	205	96	164	153.0789
cacacagcacacgcaugaacacagcacacacacgagcacagcacacacacaaacgcacagcacacaca	chr11:2153180-2153383(-)$1	203	60	128	142.2894

#otherMatches

#Struct PSSM
::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbppppppp	chr11:2152877-2153081(-)$1	204	81	149	133.9342
ppppppccc::::::::::::::::bbssssssssssbb:::bboooooobb:::::::bb[aooooo	chr11:2153010-2153215(-)$1	205	65	133	147.4210
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee:::::::::DDDD______BB:::::::::	chr11:2152766-2152968(-)$1	202	103	171	153.0789
zzzzzccc::::EEEEE::::::::::::::::::bb"""bbuuuuuuuuuuuubb333bb:::::::	chr11:2153241-2153446(-)$1	205	123	191	142.2894
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee::::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152682-2152888(-)$1	206	23	91	153.0789
::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbppppppp	chr11:2152812-2153015(-)$1	203	15	83	133.9342
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153161-2153364(-)$1	203	41	109	142.2894
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee::::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152693-2152895(-)$1	202	30	98	153.0789
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee::::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152674-2152876(-)$1	202	11	79	153.0789
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153166-2153371(-)$1	205	48	116	142.2894
ppppppccc:::::::::::bb"""bbssssssssssbb333bb::::::bbpppppppbb:::::::	chr11:2153070-2153275(-)$1	205	125	193	147.4210
::::::cccooooooccc::::::::::::::FFFFFF::::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152663-2152865(-)$1	202	0	68	153.0789
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153155-2153357(-)$1	202	34	102	142.2894
zzzzzccc::::bb[bbmmmmbbbb::::::::::bb"""bbuuuuuuuuuuuubb333bb:::::::	chr11:2153191-2153396(-)$1	205	73	141	142.2894
B:::::bb$$$$$eeeeexxxxxxxxxxxxxxxeeeee4444bb::::::::::::::::::::::::	chr11:2152670-2152872(-)$1	202	7	75	153.0789
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee::::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152695-2152898(-)$1	203	33	101	153.0789
ppppppccc::::::::::::::::bbssssssssssbb:::bboooooobb:::::::bb[aooooo	chr11:2153003-2153205(-)$1	202	55	123	147.4210
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee:::::::::DDDD______BB:::::::::	chr11:2152729-2152935(-)$1	206	70	138	153.0789
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee:::::::::DDDD______BB@@@@@@@@@	chr11:2152785-2152987(-)$1	202	122	190	153.0789
ppppppccc:::::::::::bb"""bbssssssssssbb333bb::::::bbpppppppbb:::::::	chr11:2153025-2153231(-)$1	206	81	149	147.4210
::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbppppppp	chr11:2152885-2153101(-)$1	216	101	169	133.9342
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee::::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152698-2152905(-)$1	207	40	108	153.0789
::::::cccooooooccc:::::::::::::::::CCC:::::::::::::::::::::bbppppppp	chr11:2152902-2153114(-)$1	212	114	182	133.9342
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee::::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152723-2152925(-)$1	202	60	128	153.0789
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153140-2153343(-)$1	203	20	88	142.2894
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153143-2153348(-)$1	205	25	93	142.2894
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee::::BB::::::::::::::::::::::::	chr11:2152776-2152980(-)$1	204	115	183	153.0789
::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbppppppp	chr11:2152861-2153066(-)$1	205	66	134	133.9342
::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbppppppp	chr11:2152853-2153056(-)$1	203	56	124	133.9342
::::::bb$$$$$eeeeexxxxxxxxxxxxxxxeeeee4444bb:::DDDD:::::::::::::::::	chr11:2152667-2152870(-)$1	203	5	73	153.0789
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153159-2153361(-)$1	202	38	106	142.2894
B:::::bb$$$$$eeeeexxxxxxxxxxxxxxxeeeee4444bb::::::::::::::::::::::::	chr11:2152672-2152874(-)$1	202	9	77	153.0789
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee:::::::::DDDD______BB:::::::::	chr11:2152705-2152908(-)$1	203	43	111	153.0789
::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbppppppp	chr11:2152881-2153085(-)$1	204	85	153	133.9342
zzzzzccc::::bb[bbmmmmbbbb::::::::::bb"""bbuuuuuuuuuuuubb333bb:::::::	chr11:2153202-2153405(-)$1	203	82	150	142.2894
::::::::::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153125-2153331(-)$1	206	8	76	142.2894
::::::BBNNNNNEEEEE:::::::::::::::::bbpppppppbb:::::::::::::bbppppppp	chr11:2152804-2153006(-)$1	202	6	74	133.9342
bnnnnnbb:::::::cccpppppppccc:::::EEEEE::::::::::::::::::::::::::::::	chr11:2152789-2152993(-)$1	204	128	196	153.0789
::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbppppppp	chr11:2152815-2153017(-)$1	202	17	85	133.9342
ppppppccc::::::::::::::::bbssssssssssbb:::bboooooobb:::::::bb[aooooo	chr11:2152999-2153201(-)$1	202	51	119	147.4210
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153164-2153366(-)$1	202	43	111	142.2894
::::::BBNNNNNEEEEE:::::::::::::::::bbpppppppbb:::::::::::::bbppppppp	chr11:2152800-2153002(-)$1	202	2	70	133.9342
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153157-2153359(-)$1	202	36	104	142.2894
ppppppccc::::::::::::::::bbssssssssssbb:::bboooooobb:::::::bb[aooooo	chr11:2152979-2153182(-)$1	203	32	100	147.4210
zzzzzccc::::bb[bbmmmmbbbb::::::::::bb"""bbuuuuuuuuuuuubb333bb:::::::	chr11:2153224-2153427(-)$1	203	104	172	142.2894
zzzzzccc::::EEEEE::::::::::::::::::bb"""bbuuuuuuuuuuuubb333bb:::::::	chr11:2153238-2153441(-)$1	203	118	186	142.2894
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153176-2153378(-)$1	202	55	123	142.2894
ppppppccc::::::::::::::::bbssssssssssbb:::bboooooobb:::::::bb[aooooo	chr11:2153015-2153220(-)$1	205	70	138	147.4210
zzzzzccc::::bb[bbmmmmbbbb::::::::::bb"""bbuuuuuuuuuuuubb333bb:::::::	chr11:2153209-2153412(-)$1	203	89	157	142.2894
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee::::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152717-2152923(-)$1	206	58	126	153.0789
::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbppppppp	chr11:2152838-2153042(-)$1	204	42	110	133.9342
bnnnnnbb:::::::cccpppppppccc:::::EEEEE~~~~BB::::::::::::::::::::::::	chr11:2152793-2153000(-)$1	207	135	203	153.0789
ppppppccc::::::::::::::::bbssssssssssbb:::bboooooobb:::::::BB:::::::	chr11:2153080-2153285(-)$1	205	135	203	147.4210
bnnnnnbb55555dddd::::::::::::::::BB{CCC:::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152688-2152893(-)$1	205	28	96	153.0789
zzzzzccc::::bb[bbmmmmbbbb::::::::::bb"""bbuuuuuuuuuuuubb333bb:::::::	chr11:2153189-2153391(-)$1	202	68	136	142.2894
ppppppccc::::::::::::::::bbssssssssssbb:::bboooooobb:::::::bb[aooooo	chr11:2152984-2153186(-)$1	202	36	104	147.4210
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee:::::::::DDDD______BB@@@@@@@@@	chr11:2152780-2152983(-)$1	203	118	186	153.0789
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153183-2153386(-)$1	203	63	131	142.2894
ppppppccc::::::::::::::::bbssssssssssbb:::bboooooobb:::::::bb[aooooo	chr11:2153008-2153210(-)$1	202	60	128	147.4210
zzzzzccc::::bb[bbmmmmbbbb::::::::::bb"""bbuuuuuuuuuuuubb333bb:::::::	chr11:2153214-2153417(-)$1	203	94	162	142.2894
zzzzzccc::::bb[bbmmmmbbbb::::::::::bb"""bbuuuuuuuuuuuubb333bb:::::::	chr11:2153200-2153402(-)$1	202	79	147	142.2894
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee:::::::::DDDD______BB@@@@@@@@@	chr11:2152783-2152985(-)$1	202	120	188	153.0789
::::::cccooooooccc:::::::::::::::::bbpppppppbb:::::::::::::bbppppppp	chr11:2152858-2153061(-)$1	203	61	129	133.9342
ppppppccc::::::::::::::::bbssssssssssbb:::bboooooobb:::::::bb[aooooo	chr11:2153032-2153236(-)$1	204	86	154	147.4210
zzzzzccc::::EEEEE::::::::::::::::::bb"""bbuuuuuuuuuuuubb333bb:::::::	chr11:2153232-2153436(-)$1	204	113	181	142.2894
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153178-2153380(-)$1	202	57	125	142.2894
ppppppccc::::::::::::::::bbssssssssssbb:::bboooooobb:::::::bb[aooooo	chr11:2152966-2153167(-)$1	201	17	85	147.4210
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee:::::::::DDDD______BB:::::::::	chr11:2152708-2152910(-)$1	202	45	113	153.0789
ppppppccc:::::::::::bb"""bbssssssssssbb333bb::::::bbpppppppbb:::::::	chr11:2153020-2153222(-)$1	202	72	140	147.4210
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee::::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152735-2152941(-)$1	206	76	144	153.0789
ppppppccc:::::::::::bb"""bbssssssssssbb333bb::::::bbpppppppbb:::::::	chr11:2153022-2153225(-)$1	203	75	143	147.4210
bnnnnnbb:::::::cccpppppppccc:::::EEEEE::::::::::::::::::::::::::::::	chr11:2152787-2152989(-)$1	202	124	192	153.0789
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee::::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152725-2152929(-)$1	204	64	132	153.0789
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee::::bbvvvvvvvvvvvvvbb:::::::::	chr11:2152741-2152954(-)$1	213	89	157	153.0789
bnnnnnbb:::::eeeeexxxxxxxxxxxxxxxeeeee:::::::::DDDD______BB:::::::::	chr11:2152756-2152961(-)$1	205	96	164	153.0789
zzzzzccc::::EEEEE::::::bb[aooooooa]bb:::bbuuuuuuuuuuuubb:::bbppppppp	chr11:2153180-2153383(-)$1	203	60	128	142.2894

#DB
......(((......))).................((.......)).............((.......	chr11:2152877-2153081(-)$1	1	81	149	133.9342
......)))................((..........))...((......)).......((.(.....	chr11:2153010-2153215(-)$1	1	65	133	147.4210
(.....)).....(((((...............))))).........))))......)).........	chr11:2152766-2152968(-)$1	1	103	171	153.0789
.....)))....)))))..................((...((............))...)).......	chr11:2153241-2153446(-)$1	1	123	191	142.2894
(.....)).....(((((...............)))))....((.............)).........	chr11:2152682-2152888(-)$1	1	23	91	153.0789
......(((......))).................((.......)).............((.......	chr11:2152812-2153015(-)$1	1	15	83	133.9342
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153161-2153364(-)$1	1	41	109	142.2894
(.....)).....(((((...............)))))....((.............)).........	chr11:2152693-2152895(-)$1	1	30	98	153.0789
(.....)).....(((((...............)))))....((.............)).........	chr11:2152674-2152876(-)$1	1	11	79	153.0789
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153166-2153371(-)$1	1	48	116	142.2894
......)))...........((...((..........))...))......((.......)).......	chr11:2153070-2153275(-)$1	1	125	193	147.4210
......(((......)))..............((((((....((.............)).........	chr11:2152663-2152865(-)$1	1	0	68	153.0789
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153155-2153357(-)$1	1	34	102	142.2894
.....)))....((.((....))))..........((...((............))...)).......	chr11:2153191-2153396(-)$1	1	73	141	142.2894
(.....((.....(((((...............)))))....))........................	chr11:2152670-2152872(-)$1	1	7	75	153.0789
(.....)).....(((((...............)))))....((.............)).........	chr11:2152695-2152898(-)$1	1	33	101	153.0789
......)))................((..........))...((......)).......((.(.....	chr11:2153003-2153205(-)$1	1	55	123	147.4210
(.....)).....(((((...............))))).........))))......)).........	chr11:2152729-2152935(-)$1	1	70	138	153.0789
(.....)).....(((((...............))))).........))))......)).........	chr11:2152785-2152987(-)$1	1	122	190	153.0789
......)))...........((...((..........))...))......((.......)).......	chr11:2153025-2153231(-)$1	1	81	149	147.4210
......(((......))).................((.......)).............((.......	chr11:2152885-2153101(-)$1	1	101	169	133.9342
(.....)).....(((((...............)))))....((.............)).........	chr11:2152698-2152905(-)$1	1	40	108	153.0789
......(((......))).................))).....................((.......	chr11:2152902-2153114(-)$1	1	114	182	133.9342
(.....)).....(((((...............)))))....((.............)).........	chr11:2152723-2152925(-)$1	1	60	128	153.0789
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153140-2153343(-)$1	1	20	88	142.2894
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153143-2153348(-)$1	1	25	93	142.2894
(.....)).....(((((...............)))))....))........................	chr11:2152776-2152980(-)$1	1	115	183	153.0789
......(((......))).................((.......)).............((.......	chr11:2152861-2153066(-)$1	1	66	134	133.9342
......(((......))).................((.......)).............((.......	chr11:2152853-2153056(-)$1	1	56	124	133.9342
......((.....(((((...............)))))....))...((((.................	chr11:2152667-2152870(-)$1	1	5	73	153.0789
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153159-2153361(-)$1	1	38	106	142.2894
(.....((.....(((((...............)))))....))........................	chr11:2152672-2152874(-)$1	1	9	77	153.0789
(.....)).....(((((...............))))).........))))......)).........	chr11:2152705-2152908(-)$1	1	43	111	153.0789
......(((......))).................((.......)).............((.......	chr11:2152881-2153085(-)$1	1	85	153	133.9342
.....)))....((.((....))))..........((...((............))...)).......	chr11:2153202-2153405(-)$1	1	82	150	142.2894
............(((((......((.(......).))...((............))...((.......	chr11:2153125-2153331(-)$1	1	8	76	142.2894
......((.....(((((.................((.......)).............((.......	chr11:2152804-2153006(-)$1	1	6	74	133.9342
(.....)).......(((.......))).....)))))..............................	chr11:2152789-2152993(-)$1	1	128	196	153.0789
......(((......))).................((.......)).............((.......	chr11:2152815-2153017(-)$1	1	17	85	133.9342
......)))................((..........))...((......)).......((.(.....	chr11:2152999-2153201(-)$1	1	51	119	147.4210
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153164-2153366(-)$1	1	43	111	142.2894
......((.....(((((.................((.......)).............((.......	chr11:2152800-2153002(-)$1	1	2	70	133.9342
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153157-2153359(-)$1	1	36	104	142.2894
......)))................((..........))...((......)).......((.(.....	chr11:2152979-2153182(-)$1	1	32	100	147.4210
.....)))....((.((....))))..........((...((............))...)).......	chr11:2153224-2153427(-)$1	1	104	172	142.2894
.....)))....)))))..................((...((............))...)).......	chr11:2153238-2153441(-)$1	1	118	186	142.2894
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153176-2153378(-)$1	1	55	123	142.2894
......)))................((..........))...((......)).......((.(.....	chr11:2153015-2153220(-)$1	1	70	138	147.4210
.....)))....((.((....))))..........((...((............))...)).......	chr11:2153209-2153412(-)$1	1	89	157	142.2894
(.....)).....(((((...............)))))....((.............)).........	chr11:2152717-2152923(-)$1	1	58	126	153.0789
......(((......))).................((.......)).............((.......	chr11:2152838-2153042(-)$1	1	42	110	133.9342
(.....)).......(((.......))).....)))))....))........................	chr11:2152793-2153000(-)$1	1	135	203	153.0789
......)))................((..........))...((......)).......)).......	chr11:2153080-2153285(-)$1	1	135	203	147.4210
(.....)).....))))................((.(((...((.............)).........	chr11:2152688-2152893(-)$1	1	28	96	153.0789
.....)))....((.((....))))..........((...((............))...)).......	chr11:2153189-2153391(-)$1	1	68	136	142.2894
......)))................((..........))...((......)).......((.(.....	chr11:2152984-2153186(-)$1	1	36	104	147.4210
(.....)).....(((((...............))))).........))))......)).........	chr11:2152780-2152983(-)$1	1	118	186	153.0789
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153183-2153386(-)$1	1	63	131	142.2894
......)))................((..........))...((......)).......((.(.....	chr11:2153008-2153210(-)$1	1	60	128	147.4210
.....)))....((.((....))))..........((...((............))...)).......	chr11:2153214-2153417(-)$1	1	94	162	142.2894
.....)))....((.((....))))..........((...((............))...)).......	chr11:2153200-2153402(-)$1	1	79	147	142.2894
(.....)).....(((((...............))))).........))))......)).........	chr11:2152783-2152985(-)$1	1	120	188	153.0789
......(((......))).................((.......)).............((.......	chr11:2152858-2153061(-)$1	1	61	129	133.9342
......)))................((..........))...((......)).......((.(.....	chr11:2153032-2153236(-)$1	1	86	154	147.4210
.....)))....)))))..................((...((............))...)).......	chr11:2153232-2153436(-)$1	1	113	181	142.2894
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153178-2153380(-)$1	1	57	125	142.2894
......)))................((..........))...((......)).......((.(.....	chr11:2152966-2153167(-)$1	1	17	85	147.4210
(.....)).....(((((...............))))).........))))......)).........	chr11:2152708-2152910(-)$1	1	45	113	153.0789
......)))...........((...((..........))...))......((.......)).......	chr11:2153020-2153222(-)$1	1	72	140	147.4210
(.....)).....(((((...............)))))....((.............)).........	chr11:2152735-2152941(-)$1	1	76	144	153.0789
......)))...........((...((..........))...))......((.......)).......	chr11:2153022-2153225(-)$1	1	75	143	147.4210
(.....)).......(((.......))).....)))))..............................	chr11:2152787-2152989(-)$1	1	124	192	153.0789
(.....)).....(((((...............)))))....((.............)).........	chr11:2152725-2152929(-)$1	1	64	132	153.0789
(.....)).....(((((...............)))))....((.............)).........	chr11:2152741-2152954(-)$1	1	89	157	153.0789
(.....)).....(((((...............))))).........))))......)).........	chr11:2152756-2152961(-)$1	1	96	164	153.0789
.....)))....(((((......((.(......).))...((............))...((.......	chr11:2153180-2153383(-)$1	1	60	128	142.2894

#PSSM
c : 0.84	g : 0.15	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 0.69	g : 0.30	
c : 1.00	
a : 1.00	
u : 0.81	c : 0.18	
g : 0.81	a : 0.18	
c : 0.51	a : 0.48	
a : 1.00	
c : 1.00	
a : 0.81	g : 0.18	
c : 1.00	
a : 1.00	
c : 0.69	g : 0.30	
a : 0.69	c : 0.30	
g : 0.69	a : 0.30	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
g : 0.65	a : 0.34	
c : 0.51	a : 0.48	
a : 0.53	g : 0.46	
c : 0.64	u : 0.35	
g : 0.69	a : 0.30	
c : 0.84	a : 0.15	
a : 1.00	
c : 0.69	g : 0.30	
a : 0.69	c : 0.30	
g : 0.53	a : 0.30	c : 0.15	
c : 0.84	a : 0.15	
a : 0.84	g : 0.15	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 0.64	u : 0.35	
g : 0.53	a : 0.46	
a : 0.65	c : 0.34	
a : 0.84	g : 0.15	
c : 0.84	a : 0.15	
a : 0.69	g : 0.30	
c : 1.00	
a : 1.00	
c : 0.64	g : 0.35	
a : 0.64	c : 0.35	
g : 0.64	a : 0.35	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	

#score	11076.894736842109
#seq	76
#width	68
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_UTR_m3_run1.nuc.txt

#NT
UCUG	chr1:159888399-159888614(-)$1	215	20	24	11.9999
UCUG	chr1:228286107-228286373(+)$1	266	173	177	11.9999
UCUG	chr20:30253428-30253675(-)$1	247	60	64	11.9999
UCUG	chr16:28847190-28847427(+)$1	237	13	17	11.9999
UCUG	chr19:3976047-3976285(-)$1	238	233	237	11.9999
UCUG	chr15:91461492-91461719(+)$1	227	11	15	11.9999
UCUG	chr17:41167336-41167608(-)$1	272	17	21	11.9999
UCUG	chr8:29927239-29927471(-)$1	232	58	62	11.9999
UCUG	chr20:48741544-48741779(-)$1	235	79	83	11.9999
UCUG	chr6:37787548-37787883(+)$1	335	237	241	11.9999
UCUG	chr6:34213573-34213822(+)$1	249	18	22	11.9999
UCUG	chr12:49663147-49663360(+)$1	213	3	7	11.9999
UCUG	chr3:128533158-128533406(+)$1	248	179	183	11.9999
UCUG	chr17:48459394-48459653(-)$1	259	243	247	11.9999
UCUG	chr1:31205594-31205860(-)$1	266	41	45	11.9999
UCUG	chr19:1038830-1039100(+)$1	270	80	84	11.9999
UCUG	chr7:16823210-16823480(+)$1	270	4	8	11.9999
UCUG	chr17:76988211-76988488(-)$1	277	141	145	11.9999
UCUG	chr3:47454676-47454970(+)$1	294	103	107	11.9999
UCUG	chr1:1594339-1594719(-)$1	380	27	31	11.9999
UCUG	chr11:85712055-85712296(-)$1	241	77	81	11.9999
UCUG	chr5:10681005-10681305(-)$1	300	173	177	11.9999
UCUg	chr7:5569356-5569589(-)$1	233	190	194	11.9999
UCUG	chr6:30037192-30037463(+)$1	271	28	32	11.9999
UCUG	chr12:125398602-125398861(-)$1	259	39	43	11.9999
UCUG	chr15:68378807-68379137(+)$1	330	150	154	11.9999
UCUG	chr11:62392926-62393168(-)$1	242	3	7	11.9999
UCUG	chr20:33128441-33128701(+)$1	260	248	252	11.9999
UCUG	chr10:28884639-28884995(+)$1	356	225	229	11.9999
UCUG	chr12:101787773-101788037(-)$1	264	45	49	11.9999
UCUG	chr19:34890969-34891239(+)$1	270	74	78	11.9999
UCUG	chr1:156437862-156438193(-)$1	331	18	22	11.9999
UCUG	chr3:12942643-12942913(-)$1	270	105	109	11.9999
UCUG	chr16:87437968-87438231(+)$1	263	78	82	11.9999
UCUG	chr7:30671761-30672019(+)$1	258	148	152	11.9999
UCUG	chr1:155979082-155979329(-)$1	247	175	179	11.9999
UCUG	chr1:52520675-52520932(-)$1	257	53	57	11.9999
UCUG	chr17:40023155-40023420(-)$1	265	81	85	11.9999
UCUG	chr19:17692199-17692500(+)$1	301	49	53	11.9999
UCUG	chr10:102123557-102123782(+)$1	225	1	5	11.9999
ucug	chr11:20404934-20405205(+)$1	271	61	65	11.9999
UCUG	chr1:52486338-52486618(-)$1	280	49	53	11.9999
UCUG	chr4:76569346-76569626(-)$1	280	103	107	11.9999
UCUG	chr8:130951820-130952117(-)$1	297	106	110	11.9999
UCUG	chr19:50372486-50372746(-)$1	260	193	197	11.9999
UCUG	chr12:49522519-49522764(-)$1	245	106	110	11.9999
UCUG	chr7:6442852-6443109(+)$1	257	28	32	11.9999
UCUG	chr5:177022530-177022779(+)$1	249	87	91	11.9999
UCUG	chr17:34856829-34857176(-)$1	347	162	166	11.9999
UCUG	chr11:118887971-118888207(-)$1	236	25	29	11.9999
UCUG	chr19:49468556-49468777(+)$1	221	30	34	11.9999
UCUG	chr3:39184143-39184466(-)$1	323	65	69	11.9999
UCUG	chr22:21305667-21305926(+)$1	259	98	102	11.9999
UCUG	chr15:91450543-91450798(+)$1	255	19	23	11.9999
ucug	chr4:57326261-57326528(+)$1	267	124	128	11.9999
UCUG	chr6:32136271-32136486(-)$1	215	63	67	11.9999
UCUG	chr16:28844514-28844755(+)$1	241	182	186	11.9999
UCUG	chr2:27664583-27664864(+)$1	281	14	18	11.9999
UCUG	chr14:74946784-74947035(-)$1	251	81	85	11.9999
UCUG	chr8:101716459-101716680(-)$1	221	42	46	11.9999
UCUG	chr7:5569486-5569712(-)$1	226	9	13	11.9999
UCUG	chr2:171819251-171819509(+)$1	258	81	85	11.9999
UCUG	chr6:32153438-32153686(-)$1	248	6	10	11.9999
UCUG	chr12:4411244-4411489(+)$1	245	0	4	11.9999
UCUG	chr5:179156667-179156910(+)$1	243	99	103	11.9999
UCUG	chr12:56991492-56991722(-)$1	230	14	18	11.9999
UCUG	chr12:120118170-120118399(+)$1	229	141	145	11.9999
ucug	chr18:56995782-56996009(-)$1	227	63	67	11.9999
UCUG	chr6:163991727-163991983(+)$1	256	25	29	11.9999
UCUG	chr5:150647067-150647319(+)$1	252	31	35	11.9999
UCUG	chr17:46698890-46699138(-)$1	248	35	39	11.9999
UCUG	chr22:32352664-32352965(+)$1	301	68	72	11.9999
UCUG	chr3:48788779-48789032(-)$1	253	58	62	11.9999
UCUG	chr8:61496678-61496907(+)$1	229	13	17	11.9999
UCUG	chr20:48698760-48699002(-)$1	242	66	70	11.9999
UCUG	chr8:126011387-126011675(+)$1	288	107	111	11.9999
UCUG	chr22:20939041-20939277(+)$1	236	4	8	11.9999
UCUG	chrX:134167036-134167314(+)$1	278	107	111	11.9999

#otherMatches

#Struct PSSM
::ee	chr1:206760769-206761075(+)$1	306	1	5	11.9999
DD{B	chr1:159888399-159888614(-)$1	215	20	24	11.9999
eeee	chr1:228286107-228286373(+)$1	266	173	177	11.9999
mmcc	chr20:30253428-30253675(-)$1	247	60	64	11.9999
E:::	chr16:28847190-28847427(+)$1	237	13	17	11.9999
ZZCC	chr19:3976047-3976285(-)$1	238	233	237	11.9999
####	chr15:91461492-91461719(+)$1	227	11	15	11.9999
oood	chr17:41167336-41167608(-)$1	272	17	21	11.9999
IIII	chr8:29927239-29927471(-)$1	232	58	62	11.9999
::HH	chr20:48741544-48741779(-)$1	235	79	83	11.9999
BB}F	chr6:37787548-37787883(+)$1	335	237	241	11.9999
{EEE	chr6:34213573-34213822(+)$1	249	18	22	11.9999
::::	chr12:49663147-49663360(+)$1	213	3	7	11.9999
eerr	chr3:128533158-128533406(+)$1	248	179	183	11.9999
EEE}	chr17:48459394-48459653(-)$1	259	243	247	11.9999
[ccc	chr1:31205594-31205860(-)$1	266	41	45	11.9999
]fff	chr19:1038830-1039100(+)$1	270	80	84	11.9999
D{BB	chr7:16823210-16823480(+)$1	270	4	8	11.9999
[a[b	chr17:76988211-76988488(-)$1	277	141	145	11.9999
MMMB	chr3:47454676-47454970(+)$1	294	103	107	11.9999
$$gg	chr1:1594339-1594719(-)$1	380	27	31	11.9999
8888	chr11:85712055-85712296(-)$1	241	77	81	11.9999
fffc	chr5:10681005-10681305(-)$1	300	173	177	11.9999
:::f	chr7:5569356-5569589(-)$1	233	190	194	11.9999
::::	chr6:30037192-30037463(+)$1	271	28	32	11.9999
fff]	chr12:125398602-125398861(-)$1	259	39	43	11.9999
cc!!	chr15:68378807-68379137(+)$1	330	150	154	11.9999
hhhh	chr11:62392926-62393168(-)$1	242	3	7	11.9999
::DD	chr20:33128441-33128701(+)$1	260	248	252	11.9999
GGGG	chr10:28884639-28884995(+)$1	356	225	229	11.9999
:::e	chr12:101787773-101788037(-)$1	264	45	49	11.9999
ffff	chr19:34890969-34891239(+)$1	270	74	78	11.9999
:::F	chr1:156437862-156438193(-)$1	331	18	22	11.9999
dddd	chr3:12942643-12942913(-)$1	270	105	109	11.9999
ffff	chr16:87437968-87438231(+)$1	263	78	82	11.9999
bb[h	chr7:30671761-30672019(+)$1	258	148	152	11.9999
HHHH	chr1:155979082-155979329(-)$1	247	175	179	11.9999
dddd	chr1:52520675-52520932(-)$1	257	53	57	11.9999
iiii	chr17:40023155-40023420(-)$1	265	81	85	11.9999
KKEE	chr19:17692199-17692500(+)$1	301	49	53	11.9999
cccn	chr10:102123557-102123782(+)$1	225	1	5	11.9999
ccgg	chr11:20404934-20405205(+)$1	271	61	65	11.9999
eeee	chr1:52486338-52486618(-)$1	280	49	53	11.9999
2ccc	chr4:76569346-76569626(-)$1	280	103	107	11.9999
hhhb	chr8:130951820-130952117(-)$1	297	106	110	11.9999
EEEE	chr19:50372486-50372746(-)$1	260	193	197	11.9999
###g	chr12:49522519-49522764(-)$1	245	106	110	11.9999
dddd	chr7:6442852-6443109(+)$1	257	28	32	11.9999
:ggg	chr5:177022530-177022779(+)$1	249	87	91	11.9999
cc[d	chr17:34856829-34857176(-)$1	347	162	166	11.9999
{ADD	chr11:118887971-118888207(-)$1	236	25	29	11.9999
iiii	chr19:49468556-49468777(+)$1	221	30	34	11.9999
^^^^	chr3:39184143-39184466(-)$1	323	65	69	11.9999
gggg	chr22:21305667-21305926(+)$1	259	98	102	11.9999
nndd	chr15:91450543-91450798(+)$1	255	19	23	11.9999
zzzz	chr4:57326261-57326528(+)$1	267	124	128	11.9999
:EEE	chr6:32136271-32136486(-)$1	215	63	67	11.9999
HHHH	chr16:28844514-28844755(+)$1	241	182	186	11.9999
eeeo	chr2:27664583-27664864(+)$1	281	14	18	11.9999
nccc	chr14:74946784-74947035(-)$1	251	81	85	11.9999
nccc	chr8:101716459-101716680(-)$1	221	42	46	11.9999
{A::	chr7:5569486-5569712(-)$1	226	9	13	11.9999
ffff	chr2:171819251-171819509(+)$1	258	81	85	11.9999
:::G	chr6:32153438-32153686(-)$1	248	6	10	11.9999
GGGG	chr12:4411244-4411489(+)$1	245	0	4	11.9999
:eee	chr5:179156667-179156910(+)$1	243	99	103	11.9999
eeeC	chr12:56991492-56991722(-)$1	230	14	18	11.9999
eeee	chr12:120118170-120118399(+)$1	229	141	145	11.9999
mmmb	chr18:56995782-56996009(-)$1	227	63	67	11.9999
::::	chr6:163991727-163991983(+)$1	256	25	29	11.9999
ODDD	chr5:150647067-150647319(+)$1	252	31	35	11.9999
ddd]	chr17:46698890-46699138(-)$1	248	35	39	11.9999
cddd	chr22:32352664-32352965(+)$1	301	68	72	11.9999
eeee	chr3:48788779-48789032(-)$1	253	58	62	11.9999
FFFF	chr8:61496678-61496907(+)$1	229	13	17	11.9999
e!!f	chr20:48698760-48699002(-)$1	242	66	70	11.9999
ddd[	chr8:126011387-126011675(+)$1	288	107	111	11.9999
E::C	chr22:20939041-20939277(+)$1	236	4	8	11.9999
dddd	chrX:134167036-134167314(+)$1	278	107	111	11.9999

#DB
..((	chr1:206760769-206761075(+)$1	1	1	5	11.9999
((.(	chr1:159888399-159888614(-)$1	1	20	24	11.9999
((((	chr1:228286107-228286373(+)$1	1	173	177	11.9999
..))	chr20:30253428-30253675(-)$1	1	60	64	11.9999
(...	chr16:28847190-28847427(+)$1	1	13	17	11.9999
..))	chr19:3976047-3976285(-)$1	1	233	237	11.9999
....	chr15:91461492-91461719(+)$1	1	11	15	11.9999
...)	chr17:41167336-41167608(-)$1	1	17	21	11.9999
((((	chr8:29927239-29927471(-)$1	1	58	62	11.9999
..((	chr20:48741544-48741779(-)$1	1	79	83	11.9999
)).)	chr6:37787548-37787883(+)$1	1	237	241	11.9999
.(((	chr6:34213573-34213822(+)$1	1	18	22	11.9999
....	chr12:49663147-49663360(+)$1	1	3	7	11.9999
((..	chr3:128533158-128533406(+)$1	1	179	183	11.9999
))).	chr17:48459394-48459653(-)$1	1	243	247	11.9999
.(((	chr1:31205594-31205860(-)$1	1	41	45	11.9999
.)))	chr19:1038830-1039100(+)$1	1	80	84	11.9999
(.((	chr7:16823210-16823480(+)$1	1	4	8	11.9999
.(.(	chr17:76988211-76988488(-)$1	1	141	145	11.9999
...(	chr3:47454676-47454970(+)$1	1	103	107	11.9999
..((	chr1:1594339-1594719(-)$1	1	27	31	11.9999
....	chr11:85712055-85712296(-)$1	1	77	81	11.9999
))))	chr5:10681005-10681305(-)$1	1	173	177	11.9999
...(	chr7:5569356-5569589(-)$1	1	190	194	11.9999
....	chr6:30037192-30037463(+)$1	1	28	32	11.9999
))).	chr12:125398602-125398861(-)$1	1	39	43	11.9999
((..	chr15:68378807-68379137(+)$1	1	150	154	11.9999
((((	chr11:62392926-62393168(-)$1	1	3	7	11.9999
..))	chr20:33128441-33128701(+)$1	1	248	252	11.9999
))))	chr10:28884639-28884995(+)$1	1	225	229	11.9999
...(	chr12:101787773-101788037(-)$1	1	45	49	11.9999
))))	chr19:34890969-34891239(+)$1	1	74	78	11.9999
...(	chr1:156437862-156438193(-)$1	1	18	22	11.9999
((((	chr3:12942643-12942913(-)$1	1	105	109	11.9999
))))	chr16:87437968-87438231(+)$1	1	78	82	11.9999
((.(	chr7:30671761-30672019(+)$1	1	148	152	11.9999
))))	chr1:155979082-155979329(-)$1	1	175	179	11.9999
))))	chr1:52520675-52520932(-)$1	1	53	57	11.9999
))))	chr17:40023155-40023420(-)$1	1	81	85	11.9999
..((	chr19:17692199-17692500(+)$1	1	49	53	11.9999
(((.	chr10:102123557-102123782(+)$1	1	1	5	11.9999
))))	chr11:20404934-20405205(+)$1	1	61	65	11.9999
))))	chr1:52486338-52486618(-)$1	1	49	53	11.9999
.)))	chr4:76569346-76569626(-)$1	1	103	107	11.9999
))))	chr8:130951820-130952117(-)$1	1	106	110	11.9999
))))	chr19:50372486-50372746(-)$1	1	193	197	11.9999
...(	chr12:49522519-49522764(-)$1	1	106	110	11.9999
((((	chr7:6442852-6443109(+)$1	1	28	32	11.9999
.(((	chr5:177022530-177022779(+)$1	1	87	91	11.9999
((.(	chr17:34856829-34857176(-)$1	1	162	166	11.9999
.(((	chr11:118887971-118888207(-)$1	1	25	29	11.9999
((((	chr19:49468556-49468777(+)$1	1	30	34	11.9999
....	chr3:39184143-39184466(-)$1	1	65	69	11.9999
((((	chr22:21305667-21305926(+)$1	1	98	102	11.9999
..))	chr15:91450543-91450798(+)$1	1	19	23	11.9999
....	chr4:57326261-57326528(+)$1	1	124	128	11.9999
.(((	chr6:32136271-32136486(-)$1	1	63	67	11.9999
))))	chr16:28844514-28844755(+)$1	1	182	186	11.9999
(((.	chr2:27664583-27664864(+)$1	1	14	18	11.9999
.)))	chr14:74946784-74947035(-)$1	1	81	85	11.9999
.)))	chr8:101716459-101716680(-)$1	1	42	46	11.9999
.(..	chr7:5569486-5569712(-)$1	1	9	13	11.9999
((((	chr2:171819251-171819509(+)$1	1	81	85	11.9999
...(	chr6:32153438-32153686(-)$1	1	6	10	11.9999
((((	chr12:4411244-4411489(+)$1	1	0	4	11.9999
.(((	chr5:179156667-179156910(+)$1	1	99	103	11.9999
)))(	chr12:56991492-56991722(-)$1	1	14	18	11.9999
))))	chr12:120118170-120118399(+)$1	1	141	145	11.9999
...)	chr18:56995782-56996009(-)$1	1	63	67	11.9999
....	chr6:163991727-163991983(+)$1	1	25	29	11.9999
.(((	chr5:150647067-150647319(+)$1	1	31	35	11.9999
))).	chr17:46698890-46699138(-)$1	1	35	39	11.9999
((((	chr22:32352664-32352965(+)$1	1	68	72	11.9999
((((	chr3:48788779-48789032(-)$1	1	58	62	11.9999
((((	chr8:61496678-61496907(+)$1	1	13	17	11.9999
(..(	chr20:48698760-48699002(-)$1	1	66	70	11.9999
(((.	chr8:126011387-126011675(+)$1	1	107	111	11.9999
(..(	chr22:20939041-20939277(+)$1	1	4	8	11.9999
((((	chrX:134167036-134167314(+)$1	1	107	111	11.9999

#PSSM
U : 0.96	u : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
G : 0.94	g : 0.05	

#score	947.9999999999998
#seq	79
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_transcript_m1_run1.nuc.txt

#NT
UGUG	chr2:234184394-234184601(+)$1	207	84	88	12.0000
UGUG	chr3:160232594-160232824(-)$1	230	115	119	12.0000
ugug	chr7:98479369-98479571(+)$1	202	5	9	12.0000
UGUG	chr19:49458783-49459038(+)$1	255	94	98	12.0000
UGUG	chr17:38183757-38183968(-)$1	211	0	4	12.0000
UGUG	chr18:9518118-9518329(-)$1	211	53	57	12.0000
UGUG	chr14:95999772-95999985(-)$1	213	135	139	12.0000
UGUG	chr12:6619512-6619729(+)$1	217	77	81	12.0000
UGUG	chr14:23239503-23239769(+)$1	266	39	43	12.0000
UGUG	chr12:7076445-7076658(-)$1	213	186	190	12.0000
ugug	chr11:93454853-93455067(+)$1	214	1	5	12.0000
UGUG	chr12:98115470-98115701(+)$1	231	16	20	12.0000
UGUG	chr6:31498131-31498363(-)$1	232	63	67	12.0000
UGUG	chr3:160232764-160232987(-)$1	223	78	82	12.0000
UGUG	chr12:7076461-7076676(-)$1	215	204	208	12.0000
UGUG	chr17:62496827-62497048(-)$1	221	102	106	12.0000
UGUG	chr17:75085373-75085584(+)$1	211	35	39	12.0000
ugug	chr10:97872484-97872707(+)$1	223	80	84	12.0000
ugug	chr6:89773189-89773437(-)$1	248	207	211	12.0000
UGUG	chr2:122288480-122288686(+)$1	206	168	172	12.0000
UGUG	chr10:101996887-101997096(-)$1	209	40	44	12.0000
UGUG	chr17:7080311-7080572(-)$1	261	15	19	12.0000
UGUG	chr3:172025002-172025263(+)$1	261	130	134	12.0000
UGUG	chr5:179048271-179048511(-)$1	240	52	56	12.0000
UGUG	chr2:234184417-234184630(+)$1	213	61	65	12.0000
UGUG	chr3:160232746-160232958(-)$1	212	49	53	12.0000
UGUG	chr1:109642850-109643054(+)$1	204	0	4	12.0000
UGUG	chr2:216296588-216296830(-)$1	242	36	40	12.0000
UGUG	chr16:70571859-70572073(+)$1	214	208	212	12.0000
ugug	chr11:93454810-93455047(+)$1	237	22	26	12.0000
UGUG	chr12:7076400-7076629(-)$1	229	157	161	12.0000
UGUG	chr12:6619595-6619817(+)$1	222	70	74	12.0000
UGUG	chr2:234184474-234184677(+)$1	203	4	8	12.0000
UGUG	chr2:234197411-234197624(+)$1	213	53	57	12.0000
UGUG	chr12:6619429-6619648(+)$1	219	62	66	12.0000
UGUG	chr18:9518106-9518318(-)$1	212	42	46	12.0000
ugug	chr11:88345878-88346111(-)$1	233	118	122	12.0000
UGUG	chr18:47340683-47340910(+)$1	227	38	42	12.0000
UGUG	chr9:136216213-136216417(+)$1	204	33	37	12.0000
UGUG	chr2:234197458-234197687(+)$1	229	6	10	12.0000
UGUG	chr16:89836543-89836834(-)$1	291	117	121	12.0000
UGUG	chrX:48434531-48434793(+)$1	262	152	156	12.0000
UGUG	chr2:234197387-234197597(+)$1	210	77	81	12.0000
UGUG	chr19:49607670-49607983(+)$1	313	104	108	12.0000
ugug	chr4:76750585-76750819(-)$1	234	35	39	12.0000
UGUG	chr14:36231903-36232114(-)$1	211	123	127	12.0000
UGUG	chr1:70697801-70698069(+)$1	268	92	96	12.0000
ugug	chr7:98479329-98479534(+)$1	205	35	39	12.0000
UGUG	chr17:79971513-79971754(+)$1	241	37	41	12.0000
UGUG	chr1:109642901-109643108(+)$1	207	13	17	12.0000
ugug	chr7:98479337-98479539(+)$1	202	27	31	12.0000
UGUG	chr7:2674519-2674784(+)$1	265	56	60	12.0000
UGUG	chr7:98479400-98479604(+)$1	204	60	64	12.0000
UGUG	chr3:33071664-33071895(-)$1	231	80	84	12.0000
ugug	chr2:234184272-234184475(+)$1	203	68	72	12.0000
UGUG	chr1:6705940-6706240(-)$1	300	38	42	12.0000
UGUG	chr7:2677931-2678159(+)$1	228	129	133	12.0000
UGUG	chr12:6619530-6619766(+)$1	236	59	63	12.0000
ugug	chr1:245207222-245207442(+)$1	220	91	95	12.0000
UGUG	chr2:234184368-234184594(+)$1	226	110	114	12.0000
UGUG	chr17:79966166-79966408(+)$1	242	17	21	12.0000
UGUG	chr18:47340570-47340797(+)$1	227	151	155	12.0000
ugug	chr11:93454847-93455053(+)$1	206	1	5	12.0000
UGUG	chr6:43495813-43496097(-)$1	284	10	14	12.0000
ugug	chr7:98479334-98479537(+)$1	203	30	34	12.0000
UGUG	chr2:234197397-234197604(+)$1	207	67	71	12.0000
UGUG	chr18:47340597-47340843(+)$1	246	124	128	12.0000
UGUG	chr4:1976294-1976501(+)$1	207	115	119	12.0000
UGUG	chr2:234184495-234184724(+)$1	229	28	32	12.0000
UGUG	chr19:49606592-49606852(+)$1	260	17	21	12.0000
UGUG	chr2:234197348-234197558(+)$1	210	116	120	12.0000
ugug	chr4:39299124-39299350(-)$1	226	82	86	12.0000
UGUG	chr3:160232721-160232926(-)$1	205	17	21	12.0000
Ugug	chr3:180949503-180949725(+)$1	222	20	24	12.0000
UGUG	chr17:62496848-62497065(-)$1	217	119	123	12.0000
UGUG	chr2:234197369-234197587(+)$1	218	95	99	12.0000

#otherMatches

#Struct PSSM
3ddd	chr2:234197291-234197510(+)$1	219	173	177	12.0000
eeee	chr2:234184394-234184601(+)$1	207	84	88	12.0000
3ddd	chr3:160232594-160232824(-)$1	230	115	119	12.0000
KKEE	chr7:98479369-98479571(+)$1	202	5	9	12.0000
$ccc	chr19:49458783-49459038(+)$1	255	94	98	12.0000
:CCC	chr17:38183757-38183968(-)$1	211	0	4	12.0000
dddr	chr18:9518118-9518329(-)$1	211	53	57	12.0000
eee5	chr14:95999772-95999985(-)$1	213	135	139	12.0000
b]==	chr12:6619512-6619729(+)$1	217	77	81	12.0000
ttth	chr14:23239503-23239769(+)$1	266	39	43	12.0000
bb]b	chr12:7076445-7076658(-)$1	213	186	190	12.0000
iiii	chr11:93454853-93455067(+)$1	214	1	5	12.0000
GGGG	chr12:98115470-98115701(+)$1	231	16	20	12.0000
dddd	chr6:31498131-31498363(-)$1	232	63	67	12.0000
f22=	chr3:160232764-160232987(-)$1	223	78	82	12.0000
FEEE	chr12:7076461-7076676(-)$1	215	204	208	12.0000
====	chr17:62496827-62497048(-)$1	221	102	106	12.0000
dd[b	chr17:75085373-75085584(+)$1	211	35	39	12.0000
cnnn	chr10:97872484-97872707(+)$1	223	80	84	12.0000
ffff	chr6:89773189-89773437(-)$1	248	207	211	12.0000
dddc	chr2:122288480-122288686(+)$1	206	168	172	12.0000
hhhh	chr10:101996887-101997096(-)$1	209	40	44	12.0000
!!ee	chr17:7080311-7080572(-)$1	261	15	19	12.0000
eEEE	chr3:172025002-172025263(+)$1	261	130	134	12.0000
hhhh	chr5:179048271-179048511(-)$1	240	52	56	12.0000
eeee	chr2:234184417-234184630(+)$1	213	61	65	12.0000
+++g	chr3:160232746-160232958(-)$1	212	49	53	12.0000
::::	chr1:109642850-109643054(+)$1	204	0	4	12.0000
cctt	chr2:216296588-216296830(-)$1	242	36	40	12.0000
::::	chr16:70571859-70572073(+)$1	214	208	212	12.0000
ccc[	chr11:93454810-93455047(+)$1	237	22	26	12.0000
[a[c	chr12:7076400-7076629(-)$1	229	157	161	12.0000
""cc	chr12:6619595-6619817(+)$1	222	70	74	12.0000
DDDD	chr2:234184474-234184677(+)$1	203	4	8	12.0000
#eee	chr2:234197411-234197624(+)$1	213	53	57	12.0000
eeee	chr12:6619429-6619648(+)$1	219	62	66	12.0000
fff8	chr18:9518106-9518318(-)$1	212	42	46	12.0000
a]bb	chr11:88345878-88346111(-)$1	233	118	122	12.0000
DDDK	chr18:47340683-47340910(+)$1	227	38	42	12.0000
&&&&	chr9:136216213-136216417(+)$1	204	33	37	12.0000
:::d	chr2:234197458-234197687(+)$1	229	6	10	12.0000
]a]b	chr16:89836543-89836834(-)$1	291	117	121	12.0000
'ddd	chrX:48434531-48434793(+)$1	262	152	156	12.0000
#eee	chr2:234197387-234197597(+)$1	210	77	81	12.0000
cc[c	chr19:49607670-49607983(+)$1	313	104	108	12.0000
rrrr	chr4:76750585-76750819(-)$1	234	35	39	12.0000
gggg	chr14:36231903-36232114(-)$1	211	123	127	12.0000
((((	chr1:70697801-70698069(+)$1	268	92	96	12.0000
====	chr7:98479329-98479534(+)$1	205	35	39	12.0000
]bb]	chr17:79971513-79971754(+)$1	241	37	41	12.0000
[a[c	chr1:109642901-109643108(+)$1	207	13	17	12.0000
====	chr7:98479337-98479539(+)$1	202	27	31	12.0000
]bb2	chr7:2674519-2674784(+)$1	265	56	60	12.0000
dd[d	chr7:98479400-98479604(+)$1	204	60	64	12.0000
]a]g	chr3:33071664-33071895(-)$1	231	80	84	12.0000
:ccc	chr2:234184272-234184475(+)$1	203	68	72	12.0000
gggm	chr1:6705940-6706240(-)$1	300	38	42	12.0000
fffo	chr7:2677931-2678159(+)$1	228	129	133	12.0000
b]==	chr12:6619530-6619766(+)$1	236	59	63	12.0000
ffff	chr1:245207222-245207442(+)$1	220	91	95	12.0000
eeee	chr2:234184368-234184594(+)$1	226	110	114	12.0000
DDFF	chr17:79966166-79966408(+)$1	242	17	21	12.0000
:CCC	chr18:47340570-47340797(+)$1	227	151	155	12.0000
:::i	chr11:93454847-93455053(+)$1	206	1	5	12.0000
mmmc	chr6:43495813-43496097(-)$1	284	10	14	12.0000
====	chr7:98479334-98479537(+)$1	203	30	34	12.0000
3eee	chr2:234197397-234197604(+)$1	207	67	71	12.0000
DDDK	chr18:47340597-47340843(+)$1	246	124	128	12.0000
2fff	chr4:1976294-1976501(+)$1	207	115	119	12.0000
f[dd	chr2:234184495-234184724(+)$1	229	28	32	12.0000
[a[b	chr19:49606592-49606852(+)$1	260	17	21	12.0000
3ddd	chr2:234197348-234197558(+)$1	210	116	120	12.0000
cnnn	chr4:39299124-39299350(-)$1	226	82	86	12.0000
:::g	chr3:160232721-160232926(-)$1	205	17	21	12.0000
ffff	chr3:180949503-180949725(+)$1	222	20	24	12.0000
====	chr17:62496848-62497065(-)$1	217	119	123	12.0000
:eee	chr2:234197369-234197587(+)$1	218	95	99	12.0000

#DB
.)))	chr2:234197291-234197510(+)$1	1	173	177	12.0000
))))	chr2:234184394-234184601(+)$1	1	84	88	12.0000
.)))	chr3:160232594-160232824(-)$1	1	115	119	12.0000
..((	chr7:98479369-98479571(+)$1	1	5	9	12.0000
.(((	chr19:49458783-49459038(+)$1	1	94	98	12.0000
.(((	chr17:38183757-38183968(-)$1	1	0	4	12.0000
(((.	chr18:9518118-9518329(-)$1	1	53	57	12.0000
))).	chr14:95999772-95999985(-)$1	1	135	139	12.0000
).))	chr12:6619512-6619729(+)$1	1	77	81	12.0000
...)	chr14:23239503-23239769(+)$1	1	39	43	12.0000
)).)	chr12:7076445-7076658(-)$1	1	186	190	12.0000
((((	chr11:93454853-93455067(+)$1	1	1	5	12.0000
((((	chr12:98115470-98115701(+)$1	1	16	20	12.0000
))))	chr6:31498131-31498363(-)$1	1	63	67	12.0000
)..)	chr3:160232764-160232987(-)$1	1	78	82	12.0000
))))	chr12:7076461-7076676(-)$1	1	204	208	12.0000
((((	chr17:62496827-62497048(-)$1	1	102	106	12.0000
((.(	chr17:75085373-75085584(+)$1	1	35	39	12.0000
(...	chr10:97872484-97872707(+)$1	1	80	84	12.0000
))))	chr6:89773189-89773437(-)$1	1	207	211	12.0000
)))(	chr2:122288480-122288686(+)$1	1	168	172	12.0000
((((	chr10:101996887-101997096(-)$1	1	40	44	12.0000
..((	chr17:7080311-7080572(-)$1	1	15	19	12.0000
))))	chr3:172025002-172025263(+)$1	1	130	134	12.0000
))))	chr5:179048271-179048511(-)$1	1	52	56	12.0000
))))	chr2:234184417-234184630(+)$1	1	61	65	12.0000
...(	chr3:160232746-160232958(-)$1	1	49	53	12.0000
....	chr1:109642850-109643054(+)$1	1	0	4	12.0000
((..	chr2:216296588-216296830(-)$1	1	36	40	12.0000
....	chr16:70571859-70572073(+)$1	1	208	212	12.0000
(((.	chr11:93454810-93455047(+)$1	1	22	26	12.0000
.(.(	chr12:7076400-7076629(-)$1	1	157	161	12.0000
..((	chr12:6619595-6619817(+)$1	1	70	74	12.0000
((((	chr2:234184474-234184677(+)$1	1	4	8	12.0000
.(((	chr2:234197411-234197624(+)$1	1	53	57	12.0000
))))	chr12:6619429-6619648(+)$1	1	62	66	12.0000
))).	chr18:9518106-9518318(-)$1	1	42	46	12.0000
).))	chr11:88345878-88346111(-)$1	1	118	122	12.0000
(((.	chr18:47340683-47340910(+)$1	1	38	42	12.0000
....	chr9:136216213-136216417(+)$1	1	33	37	12.0000
...(	chr2:234197458-234197687(+)$1	1	6	10	12.0000
.).)	chr16:89836543-89836834(-)$1	1	117	121	12.0000
.(((	chrX:48434531-48434793(+)$1	1	152	156	12.0000
.(((	chr2:234197387-234197597(+)$1	1	77	81	12.0000
((.(	chr19:49607670-49607983(+)$1	1	104	108	12.0000
....	chr4:76750585-76750819(-)$1	1	35	39	12.0000
))))	chr14:36231903-36232114(-)$1	1	123	127	12.0000
....	chr1:70697801-70698069(+)$1	1	92	96	12.0000
((((	chr7:98479329-98479534(+)$1	1	35	39	12.0000
.)).	chr17:79971513-79971754(+)$1	1	37	41	12.0000
.(.(	chr1:109642901-109643108(+)$1	1	13	17	12.0000
((((	chr7:98479337-98479539(+)$1	1	27	31	12.0000
.)).	chr7:2674519-2674784(+)$1	1	56	60	12.0000
((.(	chr7:98479400-98479604(+)$1	1	60	64	12.0000
.).)	chr3:33071664-33071895(-)$1	1	80	84	12.0000
.(((	chr2:234184272-234184475(+)$1	1	68	72	12.0000
(((.	chr1:6705940-6706240(-)$1	1	38	42	12.0000
(((.	chr7:2677931-2678159(+)$1	1	129	133	12.0000
).))	chr12:6619530-6619766(+)$1	1	59	63	12.0000
))))	chr1:245207222-245207442(+)$1	1	91	95	12.0000
))))	chr2:234184368-234184594(+)$1	1	110	114	12.0000
((((	chr17:79966166-79966408(+)$1	1	17	21	12.0000
.)))	chr18:47340570-47340797(+)$1	1	151	155	12.0000
...(	chr11:93454847-93455053(+)$1	1	1	5	12.0000
...)	chr6:43495813-43496097(-)$1	1	10	14	12.0000
((((	chr7:98479334-98479537(+)$1	1	30	34	12.0000
.)))	chr2:234197397-234197604(+)$1	1	67	71	12.0000
(((.	chr18:47340597-47340843(+)$1	1	124	128	12.0000
.)))	chr4:1976294-1976501(+)$1	1	115	119	12.0000
(.((	chr2:234184495-234184724(+)$1	1	28	32	12.0000
.(.(	chr19:49606592-49606852(+)$1	1	17	21	12.0000
.)))	chr2:234197348-234197558(+)$1	1	116	120	12.0000
(...	chr4:39299124-39299350(-)$1	1	82	86	12.0000
...(	chr3:160232721-160232926(-)$1	1	17	21	12.0000
((((	chr3:180949503-180949725(+)$1	1	20	24	12.0000
((((	chr17:62496848-62497065(-)$1	1	119	123	12.0000
.(((	chr2:234197369-234197587(+)$1	1	95	99	12.0000

#PSSM
U : 0.81	u : 0.18	
G : 0.80	g : 0.19	
U : 0.80	u : 0.19	
G : 0.80	g : 0.19	

#score	924.0000000000001
#seq	77
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_transcript_m2_run1.nuc.txt

#NT
cuggcguugcuuggc	chr17:19091320-19091544(+)$1	224	131	146	40.3846
CUGAGCCUGCUUGGC	chr20:62575372-62575649(-)$1	277	36	51	25.0000
cuggcguugcuuggc	chr17:18965272-18965534(+)$1	262	75	90	40.3846
cuggcguugcuuggc	chr17:19015764-19016034(-)$1	270	208	223	40.3846
cuggcguugcuuggc	chr17:19091288-19091507(+)$1	219	163	178	40.3846
cuggcguugcuuggc	chr17:19093377-19093590(-)$1	213	155	170	40.3846
cuggcguugcuuggc	chr17:19091307-19091512(+)$1	205	144	159	40.3846
CUGGCCUUGGAAGGC	chr9:117073833-117074102(+)$1	269	173	188	25.0000
cuggcguugcuuggc	chr17:19091312-19091520(+)$1	208	139	154	40.3846
cuggcguugcuuggc	chr17:19093390-19093627(-)$1	237	192	207	40.3846
cuggcguugcuuggc	chr17:19093343-19093553(-)$1	210	118	133	40.3846
cgggggUGGCUAGGC	chr8:99837539-99837771(-)$1	232	83	98	25.0000

#otherMatches

#Struct PSSM
a[ccceeeeeooooo	chr17:19093354-19093577(-)$1	223	142	157	40.3846
a[ccceeeeeooooo	chr17:19091320-19091544(+)$1	224	131	146	40.3846
%%gggggggffffff	chr20:62575372-62575649(-)$1	277	36	51	25.0000
ffccceeeeeooooo	chr17:18965272-18965534(+)$1	262	75	90	40.3846
II}CCCEEEEE}BBE	chr17:19015764-19016034(-)$1	270	208	223	40.3846
II}CCCEEEEE}BBE	chr17:19091288-19091507(+)$1	219	163	178	40.3846
IIccceeeeeooooo	chr17:19093377-19093590(-)$1	213	155	170	40.3846
a[ccceeeeeooooo	chr17:19091307-19091512(+)$1	205	144	159	40.3846
CC}JJJJJJJJJJJA	chr9:117073833-117074102(+)$1	269	173	188	25.0000
IIccceeeeeooooo	chr17:19091312-19091520(+)$1	208	139	154	40.3846
II}CCCEEEEE}BBE	chr17:19093390-19093627(-)$1	237	192	207	40.3846
a[ccceeeeeooooo	chr17:19093343-19093553(-)$1	210	118	133	40.3846
ggggg[ddddllldd	chr8:99837539-99837771(-)$1	232	83	98	25.0000

#DB
(.((((((((.....	chr17:19093354-19093577(-)$1	1	142	157	40.3846
(.((((((((.....	chr17:19091320-19091544(+)$1	1	131	146	40.3846
..(((((((((((((	chr20:62575372-62575649(-)$1	1	36	51	25.0000
))((((((((.....	chr17:18965272-18965534(+)$1	1	75	90	40.3846
)).)))))))).)))	chr17:19015764-19016034(-)$1	1	208	223	40.3846
)).)))))))).)))	chr17:19091288-19091507(+)$1	1	163	178	40.3846
))((((((((.....	chr17:19093377-19093590(-)$1	1	155	170	40.3846
(.((((((((.....	chr17:19091307-19091512(+)$1	1	144	159	40.3846
)).)))))))))))(	chr9:117073833-117074102(+)$1	1	173	188	25.0000
))((((((((.....	chr17:19091312-19091520(+)$1	1	139	154	40.3846
)).)))))))).)))	chr17:19093390-19093627(-)$1	1	192	207	40.3846
(.((((((((.....	chr17:19093343-19093553(-)$1	1	118	133	40.3846
(((((.((((...))	chr8:99837539-99837771(-)$1	1	83	98	25.0000

#PSSM
c : 0.84	C : 0.15	
u : 0.76	U : 0.15	g : 0.07	
g : 0.84	G : 0.15	
g : 0.84	A : 0.07	G : 0.07	
c : 0.76	G : 0.07	C : 0.07	g : 0.07	
g : 0.84	C : 0.15	
u : 0.76	U : 0.15	C : 0.07	
u : 0.76	U : 0.15	G : 0.07	
g : 0.76	G : 0.23	
c : 0.76	C : 0.15	G : 0.07	
u : 0.76	U : 0.15	A : 0.07	
u : 0.76	A : 0.15	U : 0.07	
g : 0.76	G : 0.23	
g : 0.76	G : 0.23	
c : 0.76	C : 0.23	

#score	478.84615384615364
#seq	13
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_CDS_m1_run1.nuc.txt

#NT
GUGAGCCA	chr1:36929258-36929507(-)$1	249	201	209	13.8717
UGGAGCCA	chr2:32264341-32264724(-)$1	383	200	208	15.0256
GGGAGCCC	chr2:178129138-178129388(-)$1	250	53	61	16.3076
UGGAGCCC	chr20:60906082-60906339(-)$1	257	200	208	13.2307
UGGAGCCA	chr16:2577633-2577908(+)$1	275	114	122	15.0256
GGGAUCCA	chr22:39145735-39146051(-)$1	316	37	45	13.3589
GGGAGCCA	chr10:104486801-104487052(+)$1	251	167	175	18.1025
UGGGGCCA	chr16:2806178-2806512(+)$1	334	114	122	12.7179
GGGAGGCA	chr10:120809351-120809609(-)$1	258	77	85	14.0000
GAGAGCCA	chr17:37009792-37010073(-)$1	281	239	247	13.8717
GGGAGGCA	chr12:7283167-7283460(+)$1	293	36	44	14.0000
GGGCGCCA	chr11:64545696-64545912(-)$1	216	41	49	14.7692
GUGAGCCA	chr17:18159810-18160076(-)$1	266	177	185	13.8717
GGGGGCCU	chr19:45411102-45411346(+)$1	244	199	207	13.3589
UGGAGCCC	chr20:2639044-2639291(-)$1	247	81	89	13.2307
UGGAGCCC	chr9:80942840-80943124(+)$1	284	134	142	13.2307
GGGGGCCA	chr14:105342418-105342753(+)$1	335	61	69	15.7948
GGGAGCCA	chr16:30976670-30976919(+)$1	249	62	70	18.1025
UGGGGCCA	chr15:89864983-89865245(-)$1	262	191	199	12.7179
AGGAGCCC	chr3:183881312-183881654(+)$1	342	51	59	12.4615
GGGAGCCA	chr3:184093877-184094137(-)$1	260	58	66	18.1025
GGGGGCCC	chr2:74655639-74655859(-)$1	220	106	114	14.0000
GGGAGCCG	chr6:43276293-43276600(-)$1	307	153	161	15.5384
GGGAGCCA	chr20:48552988-48553200(+)$1	212	182	190	18.1025
GGGGGCCC	chr22:42991484-42991771(-)$1	287	19	27	14.0000
GAGAGCCA	chr21:37429265-37429543(-)$1	278	46	54	13.8717
GGGUGCCA	chr20:62598031-62598335(-)$1	304	200	208	14.8974
GGGGGCCU	chr2:27994565-27994808(+)$1	243	34	42	13.3589
GGGAGCCA	chr21:47628059-47628265(-)$1	206	107	115	18.1025
GGGAGUCA	chr16:30976785-30977051(+)$1	266	35	43	13.7435
GGGGGCCA	chr16:88599242-88599482(+)$1	240	115	123	15.7948
GGGAGCCC	chrX:153608473-153608727(+)$1	254	171	179	16.3076
GGAAGCCA	chr1:39457170-39457410(+)$1	240	129	137	13.3589
gggUGCCC	chr19:10432067-10432324(-)$1	257	232	240	13.1025
GGGGGCCU	chr12:58220000-58220269(-)$1	269	27	35	13.3589
GGGAGGCA	chr11:16766042-16766372(+)$1	330	121	129	14.0000
GGGAGCCG	chrX:152957475-152957706(+)$1	231	128	136	15.5384
GGGAGCCG	chr11:101981798-101982069(+)$1	271	164	172	15.5384

#otherMatches

#Struct PSSM
mmmmccc]	chr17:4620847-4621097(+)$1	250	90	98	15.6666
cc!!bbcc	chr1:36929258-36929507(-)$1	249	201	209	13.8717
2ccceeee	chr2:32264341-32264724(-)$1	383	200	208	15.0256
{BBKKCCC	chr2:178129138-178129388(-)$1	250	53	61	16.3076
lldddd]f	chr20:60906082-60906339(-)$1	257	200	208	13.2307
]ffffff>	chr16:2577633-2577908(+)$1	275	114	122	15.0256
iiiiiiii	chr22:39145735-39146051(-)$1	316	37	45	13.3589
iidddd!!	chr10:104486801-104487052(+)$1	251	167	175	18.1025
:EEEEEKK	chr16:2806178-2806512(+)$1	334	114	122	12.7179
fffppppp	chr10:120809351-120809609(-)$1	258	77	85	14.0000
GGGGGGG}	chr17:37009792-37010073(-)$1	281	239	247	13.8717
ee[ddddm	chr12:7283167-7283460(+)$1	293	36	44	14.0000
GGCCC::f	chr11:64545696-64545912(-)$1	216	41	49	14.7692
dddllldd	chr17:18159810-18160076(-)$1	266	177	185	13.8717
GG}HHHHH	chr19:45411102-45411346(+)$1	244	199	207	13.3589
cc!!bbmm	chr20:2639044-2639291(-)$1	247	81	89	13.2307
55dddd55	chr9:80942840-80943124(+)$1	284	134	142	13.2307
HHHHHHHH	chr14:105342418-105342753(+)$1	335	61	69	15.7948
ccc]ccce	chr16:30976670-30976919(+)$1	249	62	70	18.1025
ffffffoo	chr15:89864983-89865245(-)$1	262	191	199	12.7179
GGGGGGcc	chr3:183881312-183881654(+)$1	342	51	59	12.4615
FFFFFDDD	chr3:184093877-184094137(-)$1	260	58	66	18.1025
qqa]iiii	chr2:74655639-74655859(-)$1	220	106	114	14.0000
GGGGGG{A	chr6:43276293-43276600(-)$1	307	153	161	15.5384
mmmmccc3	chr20:48552988-48553200(+)$1	212	182	190	18.1025
iiiii###	chr22:42991484-42991771(-)$1	287	19	27	14.0000
3hhhhhhh	chr21:37429265-37429543(-)$1	278	46	54	13.8717
ddd:CCC}	chr20:62598031-62598335(-)$1	304	200	208	14.8974
eeeddddm	chr2:27994565-27994808(+)$1	243	34	42	13.3589
fffff:::	chr21:47628059-47628265(-)$1	206	107	115	18.1025
lleeeee]	chr16:30976785-30977051(+)$1	266	35	43	13.7435
gggggggw	chr16:88599242-88599482(+)$1	240	115	123	15.7948
cclllccc	chrX:153608473-153608727(+)$1	254	171	179	16.3076
nnnn====	chr1:39457170-39457410(+)$1	240	129	137	13.3589
ffffff::	chr19:10432067-10432324(-)$1	257	232	240	13.1025
hhhhheee	chr12:58220000-58220269(-)$1	269	27	35	13.3589
ff::DDDD	chr11:16766042-16766372(+)$1	330	121	129	14.0000
:EEEEE{B	chrX:152957475-152957706(+)$1	231	128	136	15.5384
cclllccc	chr11:101981798-101982069(+)$1	271	164	172	15.5384

#DB
....))).	chr17:4620847-4621097(+)$1	1	90	98	15.6666
((..((((	chr1:36929258-36929507(-)$1	1	201	209	13.8717
.)))))))	chr2:32264341-32264724(-)$1	1	200	208	15.0256
.((..(((	chr2:178129138-178129388(-)$1	1	53	61	16.3076
..)))).)	chr20:60906082-60906339(-)$1	1	200	208	13.2307
.)))))).	chr16:2577633-2577908(+)$1	1	114	122	15.0256
((((((((	chr22:39145735-39146051(-)$1	1	37	45	13.3589
((((((..	chr10:104486801-104487052(+)$1	1	167	175	18.1025
.(((((..	chr16:2806178-2806512(+)$1	1	114	122	12.7179
(((.....	chr10:120809351-120809609(-)$1	1	77	85	14.0000
))))))).	chr17:37009792-37010073(-)$1	1	239	247	13.8717
((.((((.	chr12:7283167-7283460(+)$1	1	36	44	14.0000
(((((..(	chr11:64545696-64545912(-)$1	1	41	49	14.7692
(((...))	chr17:18159810-18160076(-)$1	1	177	185	13.8717
)).)))))	chr19:45411102-45411346(+)$1	1	199	207	13.3589
((..((..	chr20:2639044-2639291(-)$1	1	81	89	13.2307
..))))..	chr9:80942840-80943124(+)$1	1	134	142	13.2307
((((((((	chr14:105342418-105342753(+)$1	1	61	69	15.7948
))).))))	chr16:30976670-30976919(+)$1	1	62	70	18.1025
((((((..	chr15:89864983-89865245(-)$1	1	191	199	12.7179
((((((((	chr3:183881312-183881654(+)$1	1	51	59	12.4615
((((((((	chr3:184093877-184094137(-)$1	1	58	66	18.1025
..).))))	chr2:74655639-74655859(-)$1	1	106	114	14.0000
((((((.(	chr6:43276293-43276600(-)$1	1	153	161	15.5384
....))).	chr20:48552988-48553200(+)$1	1	182	190	18.1025
(((((...	chr22:42991484-42991771(-)$1	1	19	27	14.0000
.)))))))	chr21:37429265-37429543(-)$1	1	46	54	13.8717
))).))).	chr20:62598031-62598335(-)$1	1	200	208	14.8974
)))((((.	chr2:27994565-27994808(+)$1	1	34	42	13.3589
)))))...	chr21:47628059-47628265(-)$1	1	107	115	18.1025
..))))).	chr16:30976785-30977051(+)$1	1	35	43	13.7435
(((((((.	chr16:88599242-88599482(+)$1	1	115	123	15.7948
((...)))	chrX:153608473-153608727(+)$1	1	171	179	16.3076
....))))	chr1:39457170-39457410(+)$1	1	129	137	13.3589
))))))..	chr19:10432067-10432324(-)$1	1	232	240	13.1025
)))))(((	chr12:58220000-58220269(-)$1	1	27	35	13.3589
))..((((	chr11:16766042-16766372(+)$1	1	121	129	14.0000
.(((((.(	chrX:152957475-152957706(+)$1	1	128	136	15.5384
((...)))	chr11:101981798-101982069(+)$1	1	164	172	15.5384

#PSSM
G : 0.76	U : 0.17	A : 0.02	g : 0.02	
G : 0.87	U : 0.05	A : 0.05	g : 0.02	
G : 0.94	A : 0.02	g : 0.02	
A : 0.69	G : 0.23	U : 0.05	C : 0.02	
G : 0.97	U : 0.02	
C : 0.89	G : 0.07	U : 0.02	
C : 1.00	
A : 0.58	C : 0.23	U : 0.10	G : 0.07	

#score	573.4358974358977
#seq	39
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_transcript_m1_run2.nuc.txt

#NT
UGGA	chr20:26189892-26190136(-)$1	244	7	11	11.9999
UGGA	chr5:138614399-138614638(+)$1	239	18	22	11.9999
ugga	chr7:120897060-120897315(+)$1	255	22	26	11.9999
UGGA	chr2:29136450-29136717(+)$1	267	14	18	11.9999
UGGA	chr17:33900586-33900868(+)$1	282	29	33	11.9999
UGGA	chr22:39711117-39711364(-)$1	247	207	211	11.9999
UGGA	chr2:203142756-203142992(+)$1	236	102	106	11.9999
UGGA	chr9:139621171-139621426(-)$1	255	7	11	11.9999
UGGA	chr11:5290778-5291008(-)$1	230	121	125	11.9999
UGGA	chr6:133136375-133136607(+)$1	232	39	43	11.9999
ugga	chr15:89878240-89878479(+)$1	239	78	82	11.9999
UGGA	chr1:45244215-45244460(+)$1	245	98	102	11.9999
UGGA	chr17:16344433-16344726(+)$1	293	51	55	11.9999
UGGA	chr3:52725323-52725562(+)$1	239	156	160	11.9999
UGGA	chr16:2814653-2814894(+)$1	241	12	16	11.9999
UGGA	chr13:107196029-107196277(-)$1	248	42	46	11.9999
UGGA	chr11:67810673-67810988(+)$1	315	131	135	11.9999
UGGA	chr9:127623675-127623925(-)$1	250	149	153	11.9999
UGGA	chr19:3980517-3980776(-)$1	259	34	38	11.9999
UGGA	chr5:98236409-98236655(-)$1	246	48	52	11.9999
UGGA	chr17:2233476-2233745(-)$1	269	71	75	11.9999
UGGA	chr11:62297321-62297602(-)$1	281	209	213	11.9999
UGGA	chr10:101996736-101997013(-)$1	277	202	206	11.9999
ugga	chr4:770476-770738(-)$1	262	110	114	11.9999
UGGA	chr15:44085158-44085450(+)$1	292	154	158	11.9999
UGGA	chr17:27050608-27050860(+)$1	252	33	37	11.9999
UGGA	chr22:50011508-50011768(-)$1	260	17	21	11.9999
UGGA	chr2:29149863-29150088(+)$1	225	167	171	11.9999
UGGA	chr6:74229656-74229880(-)$1	224	18	22	11.9999
UGGA	chr2:232321058-232321336(-)$1	278	102	106	11.9999
UGGA	chr11:93466298-93466574(-)$1	276	182	186	11.9999
UGGA	chr5:179147314-179147562(+)$1	248	101	105	11.9999
UGGA	chr19:47104519-47104794(+)$1	275	75	79	11.9999
UGGA	chr12:49048122-49048348(-)$1	226	170	174	11.9999
UGGA	chr3:142838710-142838970(+)$1	260	195	199	11.9999
UGGA	chr12:104341409-104341685(+)$1	276	48	52	11.9999
ugga	chr17:8076713-8076964(-)$1	251	120	124	11.9999
ugga	chr7:119436974-119437230(-)$1	256	94	98	11.9999
UGGA	chr12:49048148-49048401(-)$1	253	223	227	11.9999
UGGA	chr9:139621104-139621371(-)$1	267	181	185	11.9999
UGGA	chr12:95888712-95889004(+)$1	292	28	32	11.9999
UGGA	chr3:160232663-160232888(-)$1	225	12	16	11.9999
UGGA	chr19:18392061-18392310(-)$1	249	17	21	11.9999
UGGA	chr12:98993395-98993662(+)$1	267	43	47	11.9999
UGGA	chr11:46783863-46784092(-)$1	229	69	73	11.9999
UGGA	chr2:234184484-234184730(+)$1	246	8	12	11.9999
UGGA	chr16:2814229-2814474(+)$1	245	15	19	11.9999
UGGA	chr3:186504429-186504650(+)$1	221	157	161	11.9999
UGGA	chr3:39449792-39450035(+)$1	243	11	15	11.9999
UGGA	chr3:47727478-47727762(-)$1	284	229	233	11.9999
UGGA	chr9:136216144-136216396(+)$1	252	220	224	11.9999
UGGA	chrX:118921214-118921467(-)$1	253	52	56	11.9999
UGGA	chr11:122928682-122928965(-)$1	283	45	49	11.9999
UGGA	chr10:79800301-79800545(+)$1	244	4	8	11.9999
UGGA	chr8:97243080-97243373(-)$1	293	109	113	11.9999
UGGA	chr5:170814890-170815110(+)$1	220	0	4	11.9999
UGGA	chr2:187368764-187369056(+)$1	292	10	14	11.9999
UGGA	chr7:6731542-6731794(-)$1	252	12	16	11.9999
UGGA	chr17:2232340-2232577(-)$1	237	0	4	11.9999
UGGA	chr16:58582361-58582629(-)$1	268	111	115	11.9999
UGGA	chr1:173834402-173834691(-)$1	289	28	32	11.9999
ugga	chr6:16266041-16266294(+)$1	253	14	18	11.9999
ugga	chr11:122929539-122929777(-)$1	238	86	90	11.9999
ugga	chr11:5482917-5483220(-)$1	303	106	110	11.9999
UGGA	chr6:31785376-31785663(+)$1	287	112	116	11.9999
UGGA	chr15:66795489-66795739(-)$1	250	47	51	11.9999
UGGA	chr3:37367401-37367694(+)$1	293	207	211	11.9999
UGGA	chr4:32016417-32016699(+)$1	282	159	163	11.9999
UGGA	chr16:58582312-58582561(-)$1	249	43	47	11.9999
UGGA	chrX:71495293-71495509(-)$1	216	105	109	11.9999
ugga	chr6:16266094-16266342(+)$1	248	108	112	11.9999
ugga	chr7:107144923-107145206(-)$1	283	5	9	11.9999
UGGA	chr15:66793498-66793748(-)$1	250	145	149	11.9999
UGGA	chr8:124348512-124348762(-)$1	250	24	28	11.9999
UGGA	chrX:73071459-73071717(-)$1	258	43	47	11.9999
ugga	chr1:150530643-150530903(+)$1	260	98	102	11.9999
UGGA	chr3:45730380-45730642(-)$1	262	2	6	11.9999
UGGA	chr8:101725281-101725510(-)$1	229	65	69	11.9999
UGGA	chr11:5290930-5291144(-)$1	214	69	73	11.9999

#otherMatches

#Struct PSSM
ddd]	chr2:234184393-234184684(+)$1	291	99	103	11.9999
llff	chr20:26189892-26190136(-)$1	244	7	11	11.9999
BDDD	chr5:138614399-138614638(+)$1	239	18	22	11.9999
ddqq	chr7:120897060-120897315(+)$1	255	22	26	11.9999
A{A{	chr2:29136450-29136717(+)$1	267	14	18	11.9999
HHHH	chr17:33900586-33900868(+)$1	282	29	33	11.9999
fff]	chr22:39711117-39711364(-)$1	247	207	211	11.9999
mddd	chr2:203142756-203142992(+)$1	236	102	106	11.9999
gggn	chr9:139621171-139621426(-)$1	255	7	11	11.9999
dddd	chr11:5290778-5291008(-)$1	230	121	125	11.9999
BBKK	chr6:133136375-133136607(+)$1	232	39	43	11.9999
qqqq	chr15:89878240-89878479(+)$1	239	78	82	11.9999
cccm	chr1:45244215-45244460(+)$1	245	98	102	11.9999
obb2	chr17:16344433-16344726(+)$1	293	51	55	11.9999
::::	chr3:52725323-52725562(+)$1	239	156	160	11.9999
[ddd	chr16:2814653-2814894(+)$1	241	12	16	11.9999
eeee	chr13:107196029-107196277(-)$1	248	42	46	11.9999
ddll	chr11:67810673-67810988(+)$1	315	131	135	11.9999
f"""	chr9:127623675-127623925(-)$1	250	149	153	11.9999
gggg	chr19:3980517-3980776(-)$1	259	34	38	11.9999
B{EE	chr5:98236409-98236655(-)$1	246	48	52	11.9999
JJJJ	chr17:2233476-2233745(-)$1	269	71	75	11.9999
ccFF	chr11:62297321-62297602(-)$1	281	209	213	11.9999
eeee	chr10:101996736-101997013(-)$1	277	202	206	11.9999
qqqq	chr4:770476-770738(-)$1	262	110	114	11.9999
EEEE	chr15:44085158-44085450(+)$1	292	154	158	11.9999
GGGL	chr17:27050608-27050860(+)$1	252	33	37	11.9999
:::C	chr22:50011508-50011768(-)$1	260	17	21	11.9999
]a22	chr2:29149863-29150088(+)$1	225	167	171	11.9999
DDDD	chr6:74229656-74229880(-)$1	224	18	22	11.9999
ffff	chr2:232321058-232321336(-)$1	278	102	106	11.9999
DDDD	chr11:93466298-93466574(-)$1	276	182	186	11.9999
c22f	chr5:179147314-179147562(+)$1	248	101	105	11.9999
b"""	chr19:47104519-47104794(+)$1	275	75	79	11.9999
f>>>	chr12:49048122-49048348(-)$1	226	170	174	11.9999
ddd!	chr3:142838710-142838970(+)$1	260	195	199	11.9999
cccl	chr12:104341409-104341685(+)$1	276	48	52	11.9999
{DDD	chr17:8076713-8076964(-)$1	251	120	124	11.9999
"ddd	chr7:119436974-119437230(-)$1	256	94	98	11.9999
2fff	chr12:49048148-49048401(-)$1	253	223	227	11.9999
}DDD	chr9:139621104-139621371(-)$1	267	181	185	11.9999
dmmm	chr12:95888712-95889004(+)$1	292	28	32	11.9999
DDDD	chr3:160232663-160232888(-)$1	225	12	16	11.9999
eeee	chr19:18392061-18392310(-)$1	249	17	21	11.9999
ffff	chr12:98993395-98993662(+)$1	267	43	47	11.9999
ddd[	chr11:46783863-46784092(-)$1	229	69	73	11.9999
JJ{A	chr2:234184484-234184730(+)$1	246	8	12	11.9999
dddd	chr16:2814229-2814474(+)$1	245	15	19	11.9999
eeee	chr3:186504429-186504650(+)$1	221	157	161	11.9999
EEEE	chr3:39449792-39450035(+)$1	243	11	15	11.9999
eeee	chr3:47727478-47727762(-)$1	284	229	233	11.9999
f[bb	chr9:136216144-136216396(+)$1	252	220	224	11.9999
qqii	chrX:118921214-118921467(-)$1	253	52	56	11.9999
s===	chr11:122928682-122928965(-)$1	283	45	49	11.9999
ggg"	chr10:79800301-79800545(+)$1	244	4	8	11.9999
NDDD	chr8:97243080-97243373(-)$1	293	109	113	11.9999
:eee	chr5:170814890-170815110(+)$1	220	0	4	11.9999
FEEE	chr2:187368764-187369056(+)$1	292	10	14	11.9999
[bbq	chr7:6731542-6731794(-)$1	252	12	16	11.9999
:::D	chr17:2232340-2232577(-)$1	237	0	4	11.9999
"ggg	chr16:58582361-58582629(-)$1	268	111	115	11.9999
[a[a	chr1:173834402-173834691(-)$1	289	28	32	11.9999
hhhh	chr6:16266041-16266294(+)$1	253	14	18	11.9999
dddr	chr11:122929539-122929777(-)$1	238	86	90	11.9999
bbmm	chr11:5482917-5483220(-)$1	303	106	110	11.9999
hhhh	chr6:31785376-31785663(+)$1	287	112	116	11.9999
"ddd	chr15:66795489-66795739(-)$1	250	47	51	11.9999
eeee	chr3:37367401-37367694(+)$1	293	207	211	11.9999
]ccc	chr4:32016417-32016699(+)$1	282	159	163	11.9999
"ggg	chr16:58582312-58582561(-)$1	249	43	47	11.9999
[a!!	chrX:71495293-71495509(-)$1	216	105	109	11.9999
eemm	chr6:16266094-16266342(+)$1	248	108	112	11.9999
:ddd	chr7:107144923-107145206(-)$1	283	5	9	11.9999
e:::	chr15:66793498-66793748(-)$1	250	145	149	11.9999
eeee	chr8:124348512-124348762(-)$1	250	24	28	11.9999
ddd[	chrX:73071459-73071717(-)$1	258	43	47	11.9999
ccc[	chr1:150530643-150530903(+)$1	260	98	102	11.9999
::::	chr3:45730380-45730642(-)$1	262	2	6	11.9999
g:::	chr8:101725281-101725510(-)$1	229	65	69	11.9999
]eee	chr11:5290930-5291144(-)$1	214	69	73	11.9999

#DB
))).	chr2:234184393-234184684(+)$1	1	99	103	11.9999
..))	chr20:26189892-26190136(-)$1	1	7	11	11.9999
((((	chr5:138614399-138614638(+)$1	1	18	22	11.9999
((..	chr7:120897060-120897315(+)$1	1	22	26	11.9999
(.(.	chr2:29136450-29136717(+)$1	1	14	18	11.9999
((((	chr17:33900586-33900868(+)$1	1	29	33	11.9999
))).	chr22:39711117-39711364(-)$1	1	207	211	11.9999
.)))	chr2:203142756-203142992(+)$1	1	102	106	11.9999
(((.	chr9:139621171-139621426(-)$1	1	7	11	11.9999
))))	chr11:5290778-5291008(-)$1	1	121	125	11.9999
((..	chr6:133136375-133136607(+)$1	1	39	43	11.9999
....	chr15:89878240-89878479(+)$1	1	78	82	11.9999
(((.	chr1:45244215-45244460(+)$1	1	98	102	11.9999
.)).	chr17:16344433-16344726(+)$1	1	51	55	11.9999
....	chr3:52725323-52725562(+)$1	1	156	160	11.9999
.(((	chr16:2814653-2814894(+)$1	1	12	16	11.9999
((((	chr13:107196029-107196277(-)$1	1	42	46	11.9999
((..	chr11:67810673-67810988(+)$1	1	131	135	11.9999
(...	chr9:127623675-127623925(-)$1	1	149	153	11.9999
))))	chr19:3980517-3980776(-)$1	1	34	38	11.9999
(.((	chr5:98236409-98236655(-)$1	1	48	52	11.9999
((((	chr17:2233476-2233745(-)$1	1	71	75	11.9999
))))	chr11:62297321-62297602(-)$1	1	209	213	11.9999
))))	chr10:101996736-101997013(-)$1	1	202	206	11.9999
....	chr4:770476-770738(-)$1	1	110	114	11.9999
((((	chr15:44085158-44085450(+)$1	1	154	158	11.9999
(((.	chr17:27050608-27050860(+)$1	1	33	37	11.9999
...(	chr22:50011508-50011768(-)$1	1	17	21	11.9999
.)..	chr2:29149863-29150088(+)$1	1	167	171	11.9999
((((	chr6:74229656-74229880(-)$1	1	18	22	11.9999
((((	chr2:232321058-232321336(-)$1	1	102	106	11.9999
))))	chr11:93466298-93466574(-)$1	1	182	186	11.9999
)..)	chr5:179147314-179147562(+)$1	1	101	105	11.9999
(...	chr19:47104519-47104794(+)$1	1	75	79	11.9999
)...	chr12:49048122-49048348(-)$1	1	170	174	11.9999
(((.	chr3:142838710-142838970(+)$1	1	195	199	11.9999
(((.	chr12:104341409-104341685(+)$1	1	48	52	11.9999
.(((	chr17:8076713-8076964(-)$1	1	120	124	11.9999
.(((	chr7:119436974-119437230(-)$1	1	94	98	11.9999
.)))	chr12:49048148-49048401(-)$1	1	223	227	11.9999
.)))	chr9:139621104-139621371(-)$1	1	181	185	11.9999
(...	chr12:95888712-95889004(+)$1	1	28	32	11.9999
((((	chr3:160232663-160232888(-)$1	1	12	16	11.9999
((((	chr19:18392061-18392310(-)$1	1	17	21	11.9999
((((	chr12:98993395-98993662(+)$1	1	43	47	11.9999
(((.	chr11:46783863-46784092(-)$1	1	69	73	11.9999
((.(	chr2:234184484-234184730(+)$1	1	8	12	11.9999
((((	chr16:2814229-2814474(+)$1	1	15	19	11.9999
((((	chr3:186504429-186504650(+)$1	1	157	161	11.9999
((((	chr3:39449792-39450035(+)$1	1	11	15	11.9999
((((	chr3:47727478-47727762(-)$1	1	229	233	11.9999
(.((	chr9:136216144-136216396(+)$1	1	220	224	11.9999
..))	chrX:118921214-118921467(-)$1	1	52	56	11.9999
.)))	chr11:122928682-122928965(-)$1	1	45	49	11.9999
(((.	chr10:79800301-79800545(+)$1	1	4	8	11.9999
.(((	chr8:97243080-97243373(-)$1	1	109	113	11.9999
.(((	chr5:170814890-170815110(+)$1	1	0	4	11.9999
((((	chr2:187368764-187369056(+)$1	1	10	14	11.9999
.((.	chr7:6731542-6731794(-)$1	1	12	16	11.9999
...(	chr17:2232340-2232577(-)$1	1	0	4	11.9999
.(((	chr16:58582361-58582629(-)$1	1	111	115	11.9999
.(.(	chr1:173834402-173834691(-)$1	1	28	32	11.9999
((((	chr6:16266041-16266294(+)$1	1	14	18	11.9999
(((.	chr11:122929539-122929777(-)$1	1	86	90	11.9999
((..	chr11:5482917-5483220(-)$1	1	106	110	11.9999
))))	chr6:31785376-31785663(+)$1	1	112	116	11.9999
.(((	chr15:66795489-66795739(-)$1	1	47	51	11.9999
))))	chr3:37367401-37367694(+)$1	1	207	211	11.9999
.)))	chr4:32016417-32016699(+)$1	1	159	163	11.9999
.(((	chr16:58582312-58582561(-)$1	1	43	47	11.9999
.(..	chrX:71495293-71495509(-)$1	1	105	109	11.9999
((..	chr6:16266094-16266342(+)$1	1	108	112	11.9999
.(((	chr7:107144923-107145206(-)$1	1	5	9	11.9999
)...	chr15:66793498-66793748(-)$1	1	145	149	11.9999
((((	chr8:124348512-124348762(-)$1	1	24	28	11.9999
(((.	chrX:73071459-73071717(-)$1	1	43	47	11.9999
(((.	chr1:150530643-150530903(+)$1	1	98	102	11.9999
....	chr3:45730380-45730642(-)$1	1	2	6	11.9999
)...	chr8:101725281-101725510(-)$1	1	65	69	11.9999
.)))	chr11:5290930-5291144(-)$1	1	69	73	11.9999

#PSSM
U : 0.86	u : 0.13	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
A : 0.86	a : 0.13	

#score	959.9999999999998
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_transcript_m1_run1.nuc.txt

#NT
GGGUCUG	chr19:50332098-50332380(+)$1	282	63	70	12.9117
GGGUCUG	chr19:39926258-39926498(-)$1	240	56	63	12.9117
GGGCCUG	chr19:41265294-41265550(+)$1	256	209	216	16.9558
GGGCCGG	chr4:1713591-1713878(-)$1	287	82	89	13.2058
gggcuug	chr16:87368719-87368943(-)$1	224	147	154	12.6176
GUGCCUG	chrX:23801791-23802045(+)$1	254	72	79	12.6911
GGCCCUG	chr16:30762459-30762723(+)$1	264	194	201	12.6176
GGUCCUG	chr16:58622684-58622914(-)$1	230	119	126	12.3970
GGGCCUU	chr12:113600910-113601168(-)$1	258	65	72	12.6176
GCGCCUG	chr14:24735611-24735878(-)$1	267	119	126	12.5441
GGGACUG	chr16:88644009-88644262(+)$1	253	209	216	12.8382
GGGCCUG	chr11:124794844-124795076(-)$1	232	69	76	16.9558
uggccug	chr16:11875173-11875422(-)$1	249	241	248	13.1323
GGGCAUG	chr2:75109235-75109481(+)$1	246	58	65	12.5441
GGGCCUG	chr9:117052409-117052615(+)$1	206	93	100	16.9558
GGGCAUG	chr8:125580640-125580912(-)$1	272	1	8	12.5441
GGGGCUG	chr1:19208278-19208527(-)$1	249	97	104	13.0588
GGCCCUG	chr19:5696554-5696825(-)$1	271	261	268	12.6176
GGGCGUG	chr9:139734809-139735104(+)$1	295	197	204	12.4705
GGGCCUG	chr9:130167172-130167475(+)$1	303	104	111	16.9558
GGGCUUG	chr9:97767412-97767642(+)$1	230	63	70	12.6176
GGGCCUG	chr1:228288944-228289219(-)$1	275	215	222	16.9558
GGGCCGG	chr6:109702889-109703157(-)$1	268	111	118	13.2058
GGGACUG	chr8:145580377-145580627(-)$1	250	201	208	12.8382
GGGCCUA	chr9:37425962-37426206(+)$1	244	54	61	12.6176
GAGCCUG	chr16:67985064-67985326(-)$1	262	192	199	12.6911
GGGCCUG	chr11:2154820-2155056(-)$1	236	58	65	16.9558
UGGCCUG	chr1:32503329-32503580(+)$1	251	58	65	13.1323
UGGCCUG	chr6:30552068-30552336(+)$1	268	191	198	13.1323
GGGCCUC	chr17:17717847-17718091(-)$1	244	54	61	12.9852
GGGCCUG	chr20:42086744-42086967(+)$1	223	43	50	16.9558
GGCCCUG	chr19:47287309-47287534(-)$1	225	87	94	12.6176
gggccug	chr6:30884560-30884805(+)$1	245	33	40	16.9558
GGGCCGG	chr1:228290632-228290875(-)$1	243	189	196	13.2058
cggccug	chr7:127031933-127032173(-)$1	240	9	16	12.6911
GGGCCUC	chr2:3392269-3392578(+)$1	309	147	154	12.9852
GGGGCUG	chr14:75416099-75416363(-)$1	264	6	13	13.0588
GGGCCUC	chr16:84214241-84214512(-)$1	271	60	67	12.9852
GGGCCUG	chr17:80021999-80022235(-)$1	236	83	90	16.9558
GUGCCUG	chr19:803879-804160(+)$1	281	125	132	12.6911
GGGGCUG	chr8:145742865-145743128(-)$1	263	66	73	13.0588
GGGCCUC	chr3:52830343-52830586(+)$1	243	52	59	12.9852
GGGCCGG	chr1:169454604-169454931(-)$1	327	101	108	13.2058
GGGGCUG	chr16:28855779-28855997(-)$1	218	18	25	13.0588
GGGGCUG	chr11:706761-706993(+)$1	232	99	106	13.0588
GGGCCUG	chr9:130279309-130279607(-)$1	298	223	230	16.9558
GAGCCUG	chr10:100193712-100193976(-)$1	264	179	186	12.6911
GGGCCUG	chr10:102743086-102743326(+)$1	240	87	94	16.9558
GGGCCGG	chr7:2405820-2406095(+)$1	275	1	8	13.2058
GGGCCUG	chr19:1429863-1430137(+)$1	274	261	268	16.9558
GGGUCUG	chr16:28884846-28885156(+)$1	310	175	182	12.9117
GGGCCGG	chr6:132272046-132272284(-)$1	238	89	96	13.2058
UGGCCUG	chr17:43013449-43013700(-)$1	251	137	144	13.1323
AGGCCUG	chr19:4501801-4502049(+)$1	248	149	156	12.6911
GGCCCUG	chr4:1803435-1803680(+)$1	245	40	47	12.6176
GGGCCGG	chr17:80187007-80187266(+)$1	259	2	9	13.2058
GAGCCUG	chr17:16342632-16342891(+)$1	259	22	29	12.6911
GGGCCUG	chr1:32859819-32860085(-)$1	266	111	118	16.9558
UGGCCUG	chr14:24769769-24770037(+)$1	268	3	10	13.1323
GGGCCAG	chr11:124792181-124792528(-)$1	347	142	149	12.7647
GUGCCUG	chr22:23603439-23603714(+)$1	275	183	190	12.6911
GGGCCUC	chr20:42086874-42087103(+)$1	229	5	12	12.9852
GGGCCCG	chr14:105179720-105180004(+)$1	284	69	76	12.8382
UGGCCUG	chr20:39802667-39802886(+)$1	219	5	12	13.1323
GGGCCUC	chr15:79223663-79223979(-)$1	316	32	39	12.9852
UGGCCUG	chr17:73487834-73488155(+)$1	321	15	22	13.1323
GGGCCCG	chr3:184038271-184038555(+)$1	284	204	211	12.8382

#otherMatches

#Struct PSSM
::iiiii	chr19:10505889-10506135(-)$1	246	32	39	12.6176
bb[ffff	chr19:50332098-50332380(+)$1	282	63	70	12.9117
ffffff[	chr19:39926258-39926498(-)$1	240	56	63	12.9117
hhhhhhh	chr19:41265294-41265550(+)$1	256	209	216	16.9558
ee!!eee	chr4:1713591-1713878(-)$1	287	82	89	13.2058
eeeee[b	chr16:87368719-87368943(-)$1	224	147	154	12.6176
nccc]dd	chrX:23801791-23802045(+)$1	254	72	79	12.6911
ccclllc	chr16:30762459-30762723(+)$1	264	194	201	12.6176
fff]fff	chr16:58622684-58622914(-)$1	230	119	126	12.3970
ssdddd2	chr12:113600910-113601168(-)$1	258	65	72	12.6176
iiiiiii	chr14:24735611-24735878(-)$1	267	119	126	12.5441
]bb]ccc	chr16:88644009-88644262(+)$1	253	209	216	12.8382
bb]eeee	chr11:124794844-124795076(-)$1	232	69	76	16.9558
DDDD}CC	chr16:11875173-11875422(-)$1	249	241	248	13.1323
fffffhh	chr2:75109235-75109481(+)$1	246	58	65	12.5441
[a[ccc"	chr9:117052409-117052615(+)$1	206	93	100	16.9558
B{CCC{D	chr8:125580640-125580912(-)$1	272	1	8	12.5441
ffff[dd	chr1:19208278-19208527(-)$1	249	97	104	13.0588
a]fffff	chr19:5696554-5696825(-)$1	271	261	268	12.6176
FFFF}BB	chr9:139734809-139735104(+)$1	295	197	204	12.4705
HHHHHHA	chr9:130167172-130167475(+)$1	303	104	111	16.9558
EEE:::d	chr9:97767412-97767642(+)$1	230	63	70	12.6176
ccDDDDd	chr1:228288944-228289219(-)$1	275	215	222	16.9558
BBcccee	chr6:109702889-109703157(-)$1	268	111	118	13.2058
qqqqqqb	chr8:145580377-145580627(-)$1	250	201	208	12.8382
fffff]b	chr9:37425962-37426206(+)$1	244	54	61	12.6176
333bb33	chr16:67985064-67985326(-)$1	262	192	199	12.6911
eeeeccc	chr11:2154820-2155056(-)$1	236	58	65	16.9558
ccc22==	chr1:32503329-32503580(+)$1	251	58	65	13.1323
FFFFFdd	chr6:30552068-30552336(+)$1	268	191	198	13.1323
qdddd::	chr17:17717847-17718091(-)$1	244	54	61	12.9852
ddddggg	chr20:42086744-42086967(+)$1	223	43	50	16.9558
ffffffa	chr19:47287309-47287534(-)$1	225	87	94	12.6176
[bbffff	chr6:30884560-30884805(+)$1	245	33	40	16.9558
2ccc]bb	chr1:228290632-228290875(-)$1	243	189	196	13.2058
mdddd]b	chr7:127031933-127032173(-)$1	240	9	16	12.6911
fffffll	chr2:3392269-3392578(+)$1	309	147	154	12.9852
hhhhhhh	chr14:75416099-75416363(-)$1	264	6	13	13.0588
dddmmmm	chr16:84214241-84214512(-)$1	271	60	67	12.9852
ffffffm	chr17:80021999-80022235(-)$1	236	83	90	16.9558
fffffss	chr19:803879-804160(+)$1	281	125	132	12.6911
mmdddd3	chr8:145742865-145743128(-)$1	263	66	73	13.0588
EEEE:::	chr3:52830343-52830586(+)$1	243	52	59	12.9852
!bb[ccc	chr1:169454604-169454931(-)$1	327	101	108	13.2058
GGGEEEE	chr16:28855779-28855997(-)$1	218	18	25	13.0588
a[accc[	chr11:706761-706993(+)$1	232	99	106	13.0588
dddd[a[	chr9:130279309-130279607(-)$1	298	223	230	16.9558
[bbmmmm	chr10:100193712-100193976(-)$1	264	179	186	12.6911
ggggggg	chr10:102743086-102743326(+)$1	240	87	94	16.9558
DDDD{DD	chr7:2405820-2406095(+)$1	275	1	8	13.2058
GGGGG}B	chr19:1429863-1430137(+)$1	274	261	268	16.9558
=======	chr16:28884846-28885156(+)$1	310	175	182	12.9117
ffffddd	chr6:132272046-132272284(-)$1	238	89	96	13.2058
]bb22dd	chr17:43013449-43013700(-)$1	251	137	144	13.1323
4bb22gg	chr19:4501801-4502049(+)$1	248	149	156	12.6911
DDD::dd	chr4:1803435-1803680(+)$1	245	40	47	12.6176
JJJJJJJ	chr17:80187007-80187266(+)$1	259	2	9	13.2058
]adddd[	chr17:16342632-16342891(+)$1	259	22	29	12.6911
ooeeeee	chr1:32859819-32860085(-)$1	266	111	118	16.9558
::BBBB{	chr14:24769769-24770037(+)$1	268	3	10	13.1323
ccnnnnn	chr11:124792181-124792528(-)$1	347	142	149	12.7647
DDDDBBf	chr22:23603439-23603714(+)$1	275	183	190	12.6911
GGGG{BB	chr20:42086874-42087103(+)$1	229	5	12	12.9852
FFFBB{D	chr14:105179720-105180004(+)$1	284	69	76	12.8382
JJJJJJJ	chr20:39802667-39802886(+)$1	219	5	12	13.1323
eeeeeqq	chr15:79223663-79223979(-)$1	316	32	39	12.9852
!ccc[cc	chr17:73487834-73488155(+)$1	321	15	22	13.1323
iiiiiii	chr3:184038271-184038555(+)$1	284	204	211	12.8382

#DB
..(((((	chr19:10505889-10506135(-)$1	1	32	39	12.6176
((.((((	chr19:50332098-50332380(+)$1	1	63	70	12.9117
((((((.	chr19:39926258-39926498(-)$1	1	56	63	12.9117
(((((((	chr19:41265294-41265550(+)$1	1	209	216	16.9558
((..(((	chr4:1713591-1713878(-)$1	1	82	89	13.2058
(((((.(	chr16:87368719-87368943(-)$1	1	147	154	12.6176
.))).))	chrX:23801791-23802045(+)$1	1	72	79	12.6911
(((...)	chr16:30762459-30762723(+)$1	1	194	201	12.6176
))).)))	chr16:58622684-58622914(-)$1	1	119	126	12.3970
..)))).	chr12:113600910-113601168(-)$1	1	65	72	12.6176
(((((((	chr14:24735611-24735878(-)$1	1	119	126	12.5441
.)).)))	chr16:88644009-88644262(+)$1	1	209	216	12.8382
)).))))	chr11:124794844-124795076(-)$1	1	69	76	16.9558
)))).))	chr16:11875173-11875422(-)$1	1	241	248	13.1323
)))))))	chr2:75109235-75109481(+)$1	1	58	65	12.5441
.(.(((.	chr9:117052409-117052615(+)$1	1	93	100	16.9558
(.(((.(	chr8:125580640-125580912(-)$1	1	1	8	12.5441
((((.((	chr1:19208278-19208527(-)$1	1	97	104	13.0588
).)))))	chr19:5696554-5696825(-)$1	1	261	268	12.6176
)))).))	chr9:139734809-139735104(+)$1	1	197	204	12.4705
(((((((	chr9:130167172-130167475(+)$1	1	104	111	16.9558
(((...(	chr9:97767412-97767642(+)$1	1	63	70	12.6176
))))))(	chr1:228288944-228289219(-)$1	1	215	222	16.9558
(((((((	chr6:109702889-109703157(-)$1	1	111	118	13.2058
......)	chr8:145580377-145580627(-)$1	1	201	208	12.8382
))))).)	chr9:37425962-37426206(+)$1	1	54	61	12.6176
...))..	chr16:67985064-67985326(-)$1	1	192	199	12.6911
)))))))	chr11:2154820-2155056(-)$1	1	58	65	16.9558
)))..))	chr1:32503329-32503580(+)$1	1	58	65	13.1323
)))))((	chr6:30552068-30552336(+)$1	1	191	198	13.1323
.))))..	chr17:17717847-17718091(-)$1	1	54	61	12.9852
(((((((	chr20:42086744-42086967(+)$1	1	43	50	16.9558
)))))))	chr19:47287309-47287534(-)$1	1	87	94	12.6176
.((((((	chr6:30884560-30884805(+)$1	1	33	40	16.9558
.))).))	chr1:228290632-228290875(-)$1	1	189	196	13.2058
.)))).)	chr7:127031933-127032173(-)$1	1	9	16	12.6911
(((((..	chr2:3392269-3392578(+)$1	1	147	154	12.9852
(((((((	chr14:75416099-75416363(-)$1	1	6	13	13.0588
(((....	chr16:84214241-84214512(-)$1	1	60	67	12.9852
((((((.	chr17:80021999-80022235(-)$1	1	83	90	16.9558
(((((..	chr19:803879-804160(+)$1	1	125	132	12.6911
..)))).	chr8:145742865-145743128(-)$1	1	66	73	13.0588
((((...	chr3:52830343-52830586(+)$1	1	52	59	12.9852
.((.(((	chr1:169454604-169454931(-)$1	1	101	108	13.2058
(((((((	chr16:28855779-28855997(-)$1	1	18	25	13.0588
(.((((.	chr11:706761-706993(+)$1	1	99	106	13.0588
((((.(.	chr9:130279309-130279607(-)$1	1	223	230	16.9558
.((....	chr10:100193712-100193976(-)$1	1	179	186	12.6911
)))))))	chr10:102743086-102743326(+)$1	1	87	94	16.9558
((((.((	chr7:2405820-2406095(+)$1	1	1	8	13.2058
))))).)	chr19:1429863-1430137(+)$1	1	261	268	16.9558
)))))))	chr16:28884846-28885156(+)$1	1	175	182	12.9117
(((((((	chr6:132272046-132272284(-)$1	1	89	96	13.2058
.))..))	chr17:43013449-43013700(-)$1	1	137	144	13.1323
.))..))	chr19:4501801-4502049(+)$1	1	149	156	12.6911
(((..((	chr4:1803435-1803680(+)$1	1	40	47	12.6176
(((((((	chr17:80187007-80187266(+)$1	1	2	9	13.2058
.)((((.	chr17:16342632-16342891(+)$1	1	22	29	12.6911
..)))))	chr1:32859819-32860085(-)$1	1	111	118	16.9558
..((((.	chr14:24769769-24770037(+)$1	1	3	10	13.1323
((.....	chr11:124792181-124792528(-)$1	1	142	149	12.7647
))))))(	chr22:23603439-23603714(+)$1	1	183	190	12.6911
((((.((	chr20:42086874-42087103(+)$1	1	5	12	12.9852
(((((.(	chr14:105179720-105180004(+)$1	1	69	76	12.8382
(((((((	chr20:39802667-39802886(+)$1	1	5	12	13.1323
(((((..	chr15:79223663-79223979(-)$1	1	32	39	12.9852
.(((.((	chr17:73487834-73488155(+)$1	1	15	22	13.1323
)))))))	chr3:184038271-184038555(+)$1	1	204	211	12.8382

#PSSM
G : 0.83	U : 0.08	g : 0.02	u : 0.01	c : 0.01	A : 0.01	
G : 0.83	g : 0.05	U : 0.04	A : 0.04	C : 0.01	
G : 0.86	g : 0.05	C : 0.05	U : 0.01	
C : 0.79	G : 0.07	c : 0.05	U : 0.04	A : 0.02	
C : 0.86	c : 0.04	U : 0.02	A : 0.02	u : 0.01	G : 0.01	
U : 0.79	G : 0.10	u : 0.05	C : 0.02	A : 0.01	
G : 0.82	C : 0.08	g : 0.05	U : 0.01	A : 0.01	

#score	928.4411764705867
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_UTR_m2_run1.nuc.txt

#NT
AUUUU	chr10:102122040-102122274(+)$1	234	95	100	14.9999
AUUUU	chr4:141472541-141472852(+)$1	311	73	78	14.9999
auuuu	chr3:32523011-32523262(-)$1	251	188	193	14.9999
AUUUU	chr7:116436374-116436651(+)$1	277	74	79	14.9999
AUUUU	chr6:149731673-149731968(+)$1	295	221	226	14.9999
AUUUU	chr4:74285244-74285451(+)$1	207	129	134	14.9999
AUUUU	chr9:136229701-136229929(-)$1	228	82	87	14.9999
AUUUU	chr11:129992105-129992353(+)$1	248	80	85	14.9999
AUUUU	chr4:74285884-74286087(+)$1	203	25	30	14.9999
AUUUU	chr18:21061600-21061882(+)$1	282	7	12	14.9999
AUUUU	chr19:34891052-34891313(+)$1	261	201	206	14.9999
AUUUU	chr4:74280664-74280870(+)$1	206	34	39	14.9999
AUUUU	chr4:74280653-74280859(+)$1	206	45	50	14.9999
AUUUU	chr9:33110673-33110920(-)$1	247	140	145	14.9999
AUUUU	chr11:62283506-62283771(-)$1	265	214	219	14.9999
AUUUU	chr3:57562941-57563166(-)$1	225	40	45	14.9999
AUUUU	chr10:79800274-79800493(+)$1	219	52	57	14.9999
AUUUU	chrX:138810330-138810598(-)$1	268	133	138	14.9999
AUUUU	chr9:136229729-136229946(-)$1	217	7	12	14.9999
AUUUU	chr2:128948495-128948768(+)$1	273	225	230	14.9999
AUUUU	chr2:131809273-131809538(-)$1	265	42	47	14.9999
AUUUU	chr16:70607916-70608145(+)$1	229	136	141	14.9999
AUUUU	chr3:167727407-167727676(-)$1	269	98	103	14.9999
AUUUU	chr6:138202891-138203171(+)$1	280	260	265	14.9999
AUUUU	chr8:48685587-48685821(-)$1	234	102	107	14.9999
AUUUU	chr1:160966843-160967101(-)$1	258	196	201	14.9999
AUUUU	chr17:5346905-5347153(-)$1	248	101	106	14.9999
AUUUU	chr6:138411927-138412180(-)$1	253	30	35	14.9999
AUUUU	chr3:130712712-130712980(+)$1	268	15	20	14.9999
AUUUU	chr12:9245960-9246189(-)$1	229	178	183	14.9999
AUUUU	chr7:158438122-158438387(-)$1	265	48	53	14.9999
AUUUU	chr15:35147974-35148237(-)$1	263	74	79	14.9999
AUUUU	chr4:23796269-23796563(-)$1	294	218	223	14.9999
AUUUU	chr16:14530289-14530521(-)$1	232	100	105	14.9999
AUUUU	chr3:195781851-195782089(-)$1	238	166	171	14.9999
AUUUU	chr5:43290292-43290598(-)$1	306	216	221	14.9999
AUUUU	chr11:120100448-120100676(+)$1	228	80	85	14.9999
AUUUU	chr5:38475962-38476216(-)$1	254	7	12	14.9999
AUUUU	chr12:66359594-66359811(+)$1	217	24	29	14.9999
AUUUU	chr10:79800293-79800509(+)$1	216	33	38	14.9999
AUUUU	chr17:12011004-12011236(+)$1	232	37	42	14.9999
AUUUU	chr3:186303393-186303651(+)$1	258	172	177	14.9999
AUUUU	chr19:7115862-7116123(-)$1	261	75	80	14.9999
AUUUU	chr2:128873775-128874018(+)$1	243	44	49	14.9999
AUUUU	chr1:67877710-67877959(-)$1	249	148	153	14.9999
AUUUU	chr2:112779042-112779259(+)$1	217	202	207	14.9999
AUUUU	chr3:48787904-48788159(-)$1	255	168	173	14.9999
AUUUU	chr15:75219005-75219324(-)$1	319	87	92	14.9999
AUUUU	chr20:50217335-50217588(-)$1	253	150	155	14.9999
AUUUU	chr17:7215074-7215314(+)$1	240	183	188	14.9999
AUUUU	chr13:113977332-113977600(+)$1	268	221	226	14.9999
AUUUU	chr7:30121147-30121364(+)$1	217	99	104	14.9999
auuuu	chr20:46284837-46285081(+)$1	244	83	88	14.9999
AUUUU	chr14:21168498-21168747(+)$1	249	59	64	14.9999
AUUUU	chr6:16302462-16302718(-)$1	256	14	19	14.9999
AUUUU	chr12:110779932-110780160(+)$1	228	7	12	14.9999
AUUUU	chr3:69150898-69151152(+)$1	254	68	73	14.9999
AUUUU	chr9:136229914-136230161(-)$1	247	89	94	14.9999
AUUUU	chr9:95049981-95050222(-)$1	241	22	27	14.9999
AUUUU	chr4:129193505-129193757(-)$1	252	69	74	14.9999
AUUUU	chr6:44223204-44223480(-)$1	276	37	42	14.9999
AUUUU	chr12:42480991-42481260(-)$1	269	49	54	14.9999

#otherMatches

#Struct PSSM
c22ff	chr18:10552226-10552471(+)$1	245	161	166	14.9999
dqqqq	chr10:102122040-102122274(+)$1	234	95	100	14.9999
:::JJ	chr4:141472541-141472852(+)$1	311	73	78	14.9999
mmiii	chr3:32523011-32523262(-)$1	251	188	193	14.9999
iiiii	chr7:116436374-116436651(+)$1	277	74	79	14.9999
>>>>>	chr6:149731673-149731968(+)$1	295	221	226	14.9999
EEE~~	chr4:74285244-74285451(+)$1	207	129	134	14.9999
[ffff	chr9:136229701-136229929(-)$1	228	82	87	14.9999
EEEEE	chr11:129992105-129992353(+)$1	248	80	85	14.9999
NNNEE	chr4:74285884-74286087(+)$1	203	25	30	14.9999
(((((	chr18:21061600-21061882(+)$1	282	7	12	14.9999
:::::	chr19:34891052-34891313(+)$1	261	201	206	14.9999
dxxxx	chr4:74280664-74280870(+)$1	206	34	39	14.9999
77777	chr4:74280653-74280859(+)$1	206	45	50	14.9999
:::::	chr9:33110673-33110920(-)$1	247	140	145	14.9999
D}DDD	chr11:62283506-62283771(-)$1	265	214	219	14.9999
OOOOO	chr3:57562941-57563166(-)$1	225	40	45	14.9999
f[ddd	chr10:79800274-79800493(+)$1	219	52	57	14.9999
=====	chrX:138810330-138810598(-)$1	268	133	138	14.9999
[gggg	chr9:136229729-136229946(-)$1	217	7	12	14.9999
fffff	chr2:128948495-128948768(+)$1	273	225	230	14.9999
fffff	chr2:131809273-131809538(-)$1	265	42	47	14.9999
=====	chr16:70607916-70608145(+)$1	229	136	141	14.9999
qqqqc	chr3:167727407-167727676(-)$1	269	98	103	14.9999
eeeee	chr6:138202891-138203171(+)$1	280	260	265	14.9999
%%%%%	chr8:48685587-48685821(-)$1	234	102	107	14.9999
b22cc	chr1:160966843-160967101(-)$1	258	196	201	14.9999
)))ee	chr17:5346905-5347153(-)$1	248	101	106	14.9999
eeppp	chr6:138411927-138412180(-)$1	253	30	35	14.9999
eeeee	chr3:130712712-130712980(+)$1	268	15	20	14.9999
exxxx	chr12:9245960-9246189(-)$1	229	178	183	14.9999
:::::	chr7:158438122-158438387(-)$1	265	48	53	14.9999
LIIII	chr15:35147974-35148237(-)$1	263	74	79	14.9999
hmmmm	chr4:23796269-23796563(-)$1	294	218	223	14.9999
bmmmm	chr16:14530289-14530521(-)$1	232	100	105	14.9999
$$$$d	chr3:195781851-195782089(-)$1	238	166	171	14.9999
:::::	chr5:43290292-43290598(-)$1	306	216	221	14.9999
mmfff	chr11:120100448-120100676(+)$1	228	80	85	14.9999
iiiii	chr5:38475962-38476216(-)$1	254	7	12	14.9999
:gggg	chr12:66359594-66359811(+)$1	217	24	29	14.9999
f[ddd	chr10:79800293-79800509(+)$1	216	33	38	14.9999
=====	chr17:12011004-12011236(+)$1	232	37	42	14.9999
ggggg	chr3:186303393-186303651(+)$1	258	172	177	14.9999
=====	chr19:7115862-7116123(-)$1	261	75	80	14.9999
GGGGG	chr2:128873775-128874018(+)$1	243	44	49	14.9999
EEEZZ	chr1:67877710-67877959(-)$1	249	148	153	14.9999
:::::	chr2:112779042-112779259(+)$1	217	202	207	14.9999
ggggg	chr3:48787904-48788159(-)$1	255	168	173	14.9999
ggggg	chr15:75219005-75219324(-)$1	319	87	92	14.9999
&&&&&	chr20:50217335-50217588(-)$1	253	150	155	14.9999
(((((	chr17:7215074-7215314(+)$1	240	183	188	14.9999
iiiii	chr13:113977332-113977600(+)$1	268	221	226	14.9999
ggggg	chr7:30121147-30121364(+)$1	217	99	104	14.9999
=====	chr20:46284837-46285081(+)$1	244	83	88	14.9999
fffff	chr14:21168498-21168747(+)$1	249	59	64	14.9999
mmmmb	chr6:16302462-16302718(-)$1	256	14	19	14.9999
ff[ee	chr12:110779932-110780160(+)$1	228	7	12	14.9999
cc!!h	chr3:69150898-69151152(+)$1	254	68	73	14.9999
77777	chr9:136229914-136230161(-)$1	247	89	94	14.9999
$$eee	chr9:95049981-95050222(-)$1	241	22	27	14.9999
fffff	chr4:129193505-129193757(-)$1	252	69	74	14.9999
qqqqq	chr6:44223204-44223480(-)$1	276	37	42	14.9999
>>>>>	chr12:42480991-42481260(-)$1	269	49	54	14.9999

#DB
)..))	chr18:10552226-10552471(+)$1	1	161	166	14.9999
(....	chr10:102122040-102122274(+)$1	1	95	100	14.9999
...((	chr4:141472541-141472852(+)$1	1	73	78	14.9999
..)))	chr3:32523011-32523262(-)$1	1	188	193	14.9999
(((((	chr7:116436374-116436651(+)$1	1	74	79	14.9999
.....	chr6:149731673-149731968(+)$1	1	221	226	14.9999
)))..	chr4:74285244-74285451(+)$1	1	129	134	14.9999
.((((	chr9:136229701-136229929(-)$1	1	82	87	14.9999
(((((	chr11:129992105-129992353(+)$1	1	80	85	14.9999
...((	chr4:74285884-74286087(+)$1	1	25	30	14.9999
.....	chr18:21061600-21061882(+)$1	1	7	12	14.9999
.....	chr19:34891052-34891313(+)$1	1	201	206	14.9999
(....	chr4:74280664-74280870(+)$1	1	34	39	14.9999
.....	chr4:74280653-74280859(+)$1	1	45	50	14.9999
.....	chr9:33110673-33110920(-)$1	1	140	145	14.9999
).)))	chr11:62283506-62283771(-)$1	1	214	219	14.9999
.....	chr3:57562941-57563166(-)$1	1	40	45	14.9999
(.(((	chr10:79800274-79800493(+)$1	1	52	57	14.9999
)))))	chrX:138810330-138810598(-)$1	1	133	138	14.9999
.((((	chr9:136229729-136229946(-)$1	1	7	12	14.9999
(((((	chr2:128948495-128948768(+)$1	1	225	230	14.9999
)))))	chr2:131809273-131809538(-)$1	1	42	47	14.9999
(((((	chr16:70607916-70608145(+)$1	1	136	141	14.9999
....)	chr3:167727407-167727676(-)$1	1	98	103	14.9999
)))))	chr6:138202891-138203171(+)$1	1	260	265	14.9999
.....	chr8:48685587-48685821(-)$1	1	102	107	14.9999
)..))	chr1:160966843-160967101(-)$1	1	196	201	14.9999
...((	chr17:5346905-5347153(-)$1	1	101	106	14.9999
((...	chr6:138411927-138412180(-)$1	1	30	35	14.9999
(((((	chr3:130712712-130712980(+)$1	1	15	20	14.9999
(....	chr12:9245960-9246189(-)$1	1	178	183	14.9999
.....	chr7:158438122-158438387(-)$1	1	48	53	14.9999
.((((	chr15:35147974-35148237(-)$1	1	74	79	14.9999
(....	chr4:23796269-23796563(-)$1	1	218	223	14.9999
(....	chr16:14530289-14530521(-)$1	1	100	105	14.9999
....(	chr3:195781851-195782089(-)$1	1	166	171	14.9999
.....	chr5:43290292-43290598(-)$1	1	216	221	14.9999
..)))	chr11:120100448-120100676(+)$1	1	80	85	14.9999
(((((	chr5:38475962-38476216(-)$1	1	7	12	14.9999
.((((	chr12:66359594-66359811(+)$1	1	24	29	14.9999
(.(((	chr10:79800293-79800509(+)$1	1	33	38	14.9999
(((((	chr17:12011004-12011236(+)$1	1	37	42	14.9999
)))))	chr3:186303393-186303651(+)$1	1	172	177	14.9999
)))))	chr19:7115862-7116123(-)$1	1	75	80	14.9999
(((((	chr2:128873775-128874018(+)$1	1	44	49	14.9999
)))..	chr1:67877710-67877959(-)$1	1	148	153	14.9999
.....	chr2:112779042-112779259(+)$1	1	202	207	14.9999
(((((	chr3:48787904-48788159(-)$1	1	168	173	14.9999
(((((	chr15:75219005-75219324(-)$1	1	87	92	14.9999
.....	chr20:50217335-50217588(-)$1	1	150	155	14.9999
.....	chr17:7215074-7215314(+)$1	1	183	188	14.9999
)))))	chr13:113977332-113977600(+)$1	1	221	226	14.9999
(((((	chr7:30121147-30121364(+)$1	1	99	104	14.9999
)))))	chr20:46284837-46285081(+)$1	1	83	88	14.9999
)))))	chr14:21168498-21168747(+)$1	1	59	64	14.9999
....)	chr6:16302462-16302718(-)$1	1	14	19	14.9999
((.((	chr12:110779932-110780160(+)$1	1	7	12	14.9999
((..(	chr3:69150898-69151152(+)$1	1	68	73	14.9999
.....	chr9:136229914-136230161(-)$1	1	89	94	14.9999
..(((	chr9:95049981-95050222(-)$1	1	22	27	14.9999
)))))	chr4:129193505-129193757(-)$1	1	69	74	14.9999
.....	chr6:44223204-44223480(-)$1	1	37	42	14.9999
.....	chr12:42480991-42481260(-)$1	1	49	54	14.9999

#PSSM
A : 0.96	a : 0.03	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	

#score	944.9999999999995
#seq	63
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_CDS_m3_run1.nuc.txt

#NT
GCACCUGUG	chr21:47612608-47612826(-)$1	218	26	35	12.7446
GCAGCAGGG	chr14:31495152-31495415(-)$1	263	83	92	17.2127
GCAGCUGUG	chr22:50017038-50017290(-)$1	252	116	125	17.5319
GCAGCAGGU	chr4:6863455-6863786(+)$1	331	34	43	13.5957
GCAGAUGUG	chr3:9711015-9711275(+)$1	260	120	129	13.1702
GCUGCUGUG	chr22:19711777-19712001(+)$1	224	98	107	14.4468
GCUGCUGCG	chr11:66392598-66392853(+)$1	255	219	228	14.0212
GCAGCAGGG	chr21:47612200-47612495(-)$1	295	170	179	17.2127
gcagcggug	chr17:34171553-34171884(+)$1	331	44	53	15.0851
GCUGCUGGC	chr11:637257-637535(+)$1	278	79	88	12.8510
GCAGCAGGU	chr17:46137197-46137505(+)$1	308	281	290	13.5957
GCAGGAGGG	chr17:4575315-4575587(-)$1	272	203	212	12.8510
GCAGCUGGC	chr10:101379863-101380186(-)$1	323	77	86	15.9361
ACAGCUGGG	chr17:79866767-79867103(-)$1	336	107	116	14.9787
GCAGCUGUG	chr22:50018411-50018662(-)$1	251	173	182	17.5319
GCUGCUGCG	chr11:66392690-66392931(+)$1	241	127	136	14.0212
GCAGCUGCA	chr8:145693808-145694078(+)$1	270	127	136	13.1702
GCGGCUGCG	chr16:845040-845284(+)$1	244	117	126	13.2765
GGAGCUGGG	chr19:49964744-49965010(+)$1	266	198	207	15.8297
GCAGCAGGG	chr14:31495101-31495352(-)$1	251	20	29	17.2127
GGAGCGGGG	chr11:61197015-61197330(-)$1	315	114	123	13.3829
GCUGCUGAG	chr11:639288-639567(+)$1	279	161	170	14.0212
GCUGCUGGG	chr1:226030068-226030375(-)$1	307	153	162	16.4680
CCAGCUGGG	chr10:72468246-72468496(+)$1	250	143	152	15.0851
GCAGAUGGG	chr16:88722384-88722614(-)$1	230	8	17	15.1914
GCAGCGGGU	chr22:50873278-50873543(+)$1	265	117	126	13.4893
gCAGCUGGC	chr16:725959-726250(+)$1	291	102	111	15.9361
GCAGCUGUG	chr22:50016963-50017204(-)$1	241	30	39	17.5319
GCAGCCGGG	chr7:77166748-77166983(+)$1	235	93	102	16.5744
GCCGCUGAG	chr19:47778364-47778599(+)$1	235	138	147	13.2765
GCAGCUGUG	chr7:100174871-100175080(-)$1	209	113	122	17.5319
ggagcuggg	chr9:140323182-140323436(+)$1	254	75	84	15.8297
GCAGCCGAG	chr14:104165106-104165382(+)$1	276	139	148	14.1276
CCAGCUGGG	chr17:80016442-80016717(-)$1	275	156	165	15.0851
GGAGCUGCG	chr15:80215300-80215601(-)$1	301	18	27	13.3829
GCAGCUGGG	chr17:46131916-46132230(+)$1	314	224	233	19.5531
GCAGCUGUG	chr7:100174751-100175019(-)$1	268	52	61	17.5319
GGAGCGGGG	chr22:22277411-22277647(-)$1	236	11	20	13.3829
GCUGCGGGG	chr19:47778061-47778339(+)$1	278	106	115	14.0212
GCAGCGGAG	chr22:51020657-51020956(-)$1	299	166	175	14.6595
GCAGGUGGG	chr11:534147-534460(-)$1	313	81	90	15.1914
GGAGCAGGG	chr16:28878125-28878389(+)$1	264	16	25	13.4893
GCAGCUCGG	chr11:557749-558004(+)$1	255	220	229	14.7659
GCAGCUGAG	chr21:45735929-45736232(+)$1	303	166	175	17.1063
GCAGCUGGU	chr6:3259324-3259594(+)$1	270	0	9	15.9361
GCAGCGGGC	chr12:132402869-132403140(+)$1	271	168	177	13.4893

#otherMatches

#Struct PSSM
EEEEKKBBA	chr17:80218672-80218914(-)$1	242	84	93	14.1276
mmmmggggg	chr21:47612608-47612826(-)$1	218	26	35	12.7446
bb[a[dddd	chr14:31495152-31495415(-)$1	263	83	92	17.2127
dd[eeeee[	chr22:50017038-50017290(-)$1	252	116	125	17.5319
CCC{DDDDK	chr4:6863455-6863786(+)$1	331	34	43	13.5957
:::eeeeen	chr3:9711015-9711275(+)$1	260	120	129	13.1702
CBBCCCKKF	chr22:19711777-19712001(+)$1	224	98	107	14.4468
DDDYYFFFF	chr11:66392598-66392853(+)$1	255	219	228	14.0212
ffffeeeee	chr21:47612200-47612495(-)$1	295	170	179	17.2127
vvvbb]eee	chr17:34171553-34171884(+)$1	331	44	53	15.0851
ndddd::FF	chr11:637257-637535(+)$1	278	79	88	12.8510
[ammmma]g	chr17:46137197-46137505(+)$1	308	281	290	13.5957
:::bb[bbf	chr17:4575315-4575587(-)$1	272	203	212	12.8510
ff22ggggg	chr10:101379863-101380186(-)$1	323	77	86	15.9361
2========	chr17:79866767-79867103(-)$1	336	107	116	14.9787
mmmmbb]dd	chr22:50018411-50018662(-)$1	251	173	182	17.5319
=========	chr11:66392690-66392931(+)$1	241	127	136	14.0212
[eeeee[==	chr8:145693808-145694078(+)$1	270	127	136	13.1702
ggggggg]a	chr16:845040-845284(+)$1	244	117	126	13.2765
qqiiiiiii	chr19:49964744-49965010(+)$1	266	198	207	15.8297
bb[a[dddd	chr14:31495101-31495352(-)$1	251	20	29	17.2127
uuuuuuuii	chr11:61197015-61197330(-)$1	315	114	123	13.3829
dddmmmmdd	chr11:639288-639567(+)$1	279	161	170	14.0212
ccc[ccc##	chr1:226030068-226030375(-)$1	307	153	162	16.4680
eeeee]bbb	chr10:72468246-72468496(+)$1	250	143	152	15.0851
:::::::::	chr16:88722384-88722614(-)$1	230	8	17	15.1914
g]bbiiiii	chr22:50873278-50873543(+)$1	265	117	126	13.4893
ccnnnnncc	chr16:725959-726250(+)$1	291	102	111	15.9361
HHA{DDDD{	chr22:50016963-50017204(-)$1	241	30	39	17.5319
dd::ccc[a	chr7:77166748-77166983(+)$1	235	93	102	16.5744
d:eeeeecc	chr19:47778364-47778599(+)$1	235	138	147	13.2765
dd[eeeee[	chr7:100174871-100175080(-)$1	209	113	122	17.5319
%%%%bb[cc	chr9:140323182-140323436(+)$1	254	75	84	15.8297
mmddddddd	chr14:104165106-104165382(+)$1	276	139	148	14.1276
}BB}AGGGG	chr17:80016442-80016717(-)$1	275	156	165	15.0851
cc[abbeee	chr15:80215300-80215601(-)$1	301	18	27	13.3829
nnnnbb22b	chr17:46131916-46132230(+)$1	314	224	233	19.5531
E{DDDD{DD	chr7:100174751-100175019(-)$1	268	52	61	17.5319
ffffflllf	chr22:22277411-22277647(-)$1	236	11	20	13.3829
ddd]bb444	chr19:47778061-47778339(+)$1	278	106	115	14.0212
d:hhhhhhh	chr22:51020657-51020956(-)$1	299	166	175	14.6595
qqqqqqccc	chr11:534147-534460(-)$1	313	81	90	15.1914
$$eeeee^^	chr16:28878125-28878389(+)$1	264	16	25	13.4893
======]ee	chr11:557749-558004(+)$1	255	220	229	14.7659
a22bb22ff	chr21:45735929-45736232(+)$1	303	166	175	17.1063
eeeee[eee	chr6:3259324-3259594(+)$1	270	0	9	15.9361
oobb]dddd	chr12:132402869-132403140(+)$1	271	168	177	13.4893

#DB
((((..(((	chr17:80218672-80218914(-)$1	1	84	93	14.1276
....)))))	chr21:47612608-47612826(-)$1	1	26	35	12.7446
((.(.((((	chr14:31495152-31495415(-)$1	1	83	92	17.2127
((.(((((.	chr22:50017038-50017290(-)$1	1	116	125	17.5319
(((.((((.	chr4:6863455-6863786(+)$1	1	34	43	13.5957
...(((((.	chr3:9711015-9711275(+)$1	1	120	129	13.1702
((((((..(	chr22:19711777-19712001(+)$1	1	98	107	14.4468
)))..))))	chr11:66392598-66392853(+)$1	1	219	228	14.0212
))))(((((	chr21:47612200-47612495(-)$1	1	170	179	17.2127
...)).)))	chr17:34171553-34171884(+)$1	1	44	53	15.0851
.))))..))	chr11:637257-637535(+)$1	1	79	88	12.8510
.(....).)	chr17:46137197-46137505(+)$1	1	281	290	13.5957
...((.(((	chr17:4575315-4575587(-)$1	1	203	212	12.8510
))..)))))	chr10:101379863-101380186(-)$1	1	77	86	15.9361
.))))))))	chr17:79866767-79867103(-)$1	1	107	116	14.9787
....)).))	chr22:50018411-50018662(-)$1	1	173	182	17.5319
(((((((((	chr11:66392690-66392931(+)$1	1	127	136	14.0212
.(((((.((	chr8:145693808-145694078(+)$1	1	127	136	13.1702
))))))).)	chr16:845040-845284(+)$1	1	117	126	13.2765
..)))))))	chr19:49964744-49965010(+)$1	1	198	207	15.8297
((.(.((((	chr14:31495101-31495352(-)$1	1	20	29	17.2127
.......))	chr11:61197015-61197330(-)$1	1	114	123	13.3829
(((....))	chr11:639288-639567(+)$1	1	161	170	14.0212
(((.(((..	chr1:226030068-226030375(-)$1	1	153	162	16.4680
))))).))(	chr10:72468246-72468496(+)$1	1	143	152	15.0851
.........	chr16:88722384-88722614(-)$1	1	8	17	15.1914
).)))))))	chr22:50873278-50873543(+)$1	1	117	126	13.4893
((.....))	chr16:725959-726250(+)$1	1	102	111	15.9361
(((.((((.	chr22:50016963-50017204(-)$1	1	30	39	17.5319
))..(((.(	chr7:77166748-77166983(+)$1	1	93	102	16.5744
).(((((((	chr19:47778364-47778599(+)$1	1	138	147	13.2765
((.(((((.	chr7:100174871-100175080(-)$1	1	113	122	17.5319
....((.((	chr9:140323182-140323436(+)$1	1	75	84	15.8297
..))))(((	chr14:104165106-104165382(+)$1	1	139	148	14.1276
.)).)))))	chr17:80016442-80016717(-)$1	1	156	165	15.0851
((.((((((	chr15:80215300-80215601(-)$1	1	18	27	13.3829
....))..)	chr17:46131916-46132230(+)$1	1	224	233	19.5531
(.((((.((	chr7:100174751-100175019(-)$1	1	52	61	17.5319
(((((...)	chr22:22277411-22277647(-)$1	1	11	20	13.3829
))).))...	chr19:47778061-47778339(+)$1	1	106	115	14.0212
).(((((((	chr22:51020657-51020956(-)$1	1	166	175	14.6595
......)))	chr11:534147-534460(-)$1	1	81	90	15.1914
..(((((..	chr16:28878125-28878389(+)$1	1	16	25	13.4893
)))))).))	chr11:557749-558004(+)$1	1	220	229	14.7659
)..))..))	chr21:45735929-45736232(+)$1	1	166	175	17.1063
(((((.(((	chr6:3259324-3259594(+)$1	1	0	9	15.9361
..)).))))	chr12:132402869-132403140(+)$1	1	168	177	13.4893

#PSSM
G : 0.85	g : 0.08	C : 0.04	A : 0.02	
C : 0.82	G : 0.10	c : 0.04	g : 0.02	
A : 0.74	U : 0.14	a : 0.04	u : 0.02	G : 0.02	C : 0.02	
G : 0.91	g : 0.06	C : 0.02	
C : 0.85	c : 0.06	A : 0.04	G : 0.04	
U : 0.61	A : 0.14	G : 0.12	C : 0.04	a : 0.02	g : 0.02	u : 0.02	
G : 0.91	g : 0.06	C : 0.02	
G : 0.55	U : 0.17	C : 0.10	A : 0.10	g : 0.04	u : 0.02	
G : 0.74	U : 0.08	C : 0.08	g : 0.06	A : 0.02	

#score	706.4468085106386
#seq	47
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_UTR_m1_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
eeee[ccc!!bb[bblllbb]bb22ccc]eeeee:::::CCC{CCCFFFFFF::::DDDDLLLEEEEE{DDDD{DDDD{EEEEEeeeeellleeeee:::::ddddooooooddddbbmmmmbb:::hhhhhhhh%%%%%%dddd[ffffff!!bbmmmmbb22ffffffdddd55555hhhhhhhh::EEEEEDDDDDDDDYYEEEEE}DDDDddddmmmmdddd:::FFFFFF}CCC}CCC:::::	chr2:216232486-216232745(-)$1	259	2	250	744.0000

#DB
((((.(((..((.((...)).))..))).))))).....(((.(((((((((....((((...(((((.((((.((((.((((((((((...))))).....((((......))))((....))...((((((((......((((.((((((..((....))..)))))))))).....))))))))..)))))))))))))..))))).))))((((....))))...)))))).))).))).....	chr2:216232486-216232745(-)$1	1	2	250	744.0000

#PSSM
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	

#score	744.0
#seq	1
#width	248
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_transcript_m1_run1.nuc.txt

#NT
GAAAG	chr21:35476760-35477070(+)$1	310	56	61	15.0000
GAAAG	chr21:15870287-15870553(-)$1	266	3	8	15.0000
GAAAG	chr9:138833608-138833878(-)$1	270	164	169	15.0000
gaaag	chr3:128218744-128219001(+)$1	257	193	198	15.0000
GAAAG	chr1:35656533-35656810(-)$1	277	125	130	15.0000
GAAAG	chr17:54974796-54975078(-)$1	282	226	231	15.0000
GAAAG	chr21:36249388-36249685(-)$1	297	176	181	15.0000
GAAAG	chr11:3071909-3072261(-)$1	352	133	138	15.0000
GAAAg	chr16:20696155-20696386(+)$1	231	3	8	15.0000
GAAAG	chr16:70302445-70302705(-)$1	260	199	204	15.0000
gaaag	chr22:19392393-19392649(-)$1	256	62	67	15.0000
GAAAG	chr1:36393154-36393467(+)$1	313	127	132	15.0000
GAAAG	chr20:57226405-57226658(+)$1	253	46	51	15.0000
GAAAG	chr22:22122454-22122731(-)$1	277	156	161	15.0000
gaaag	chr3:119177895-119178177(-)$1	282	121	126	15.0000
GAAAG	chr20:5526311-5526586(-)$1	275	88	93	15.0000
gaaag	chr12:121772370-121772679(-)$1	309	128	133	15.0000
GAAAG	chr3:6550883-6551140(+)$1	257	55	60	15.0000
gaaag	chr7:155507012-155507274(+)$1	262	253	258	15.0000
gaaag	chr17:17721824-17722120(-)$1	296	126	131	15.0000
GAAAG	chr10:62545625-62545966(+)$1	341	218	223	15.0000
GAAAG	chr22:17086391-17086652(+)$1	261	75	80	15.0000
GAAAG	chr20:34312412-34312680(-)$1	268	231	236	15.0000
gaaag	chr4:139098434-139098748(-)$1	314	129	134	15.0000
gaaag	chr9:134079652-134079926(+)$1	274	119	124	15.0000
GAAAG	chr20:5549592-5549858(-)$1	266	37	42	15.0000
gaaag	chr7:158532643-158532914(-)$1	271	228	233	15.0000
GAAAG	chr7:140397202-140397513(+)$1	311	1	6	15.0000
gaaag	chr1:29224070-29224319(+)$1	249	118	123	15.0000
GAAAG	chr19:52597686-52597948(-)$1	262	176	181	15.0000
GAAAG	chr9:37219999-37220304(+)$1	305	2	7	15.0000
GAAAG	chr14:39650061-39650320(+)$1	259	85	90	15.0000
GAAAG	chr1:161088100-161088509(+)$1	409	99	104	15.0000
GAAAG	chr3:9432227-9432493(-)$1	266	163	168	15.0000
GAAAG	chr19:54971360-54971586(+)$1	226	17	22	15.0000
GAAAG	chr17:45024333-45024645(+)$1	312	105	110	15.0000
GAAAG	chr7:151208406-151208724(-)$1	318	166	171	15.0000
gaaag	chr21:15886390-15886706(-)$1	316	116	121	15.0000
GAAAG	chr2:27820357-27820627(+)$1	270	211	216	15.0000
GAAAG	chr6:31595116-31595414(+)$1	298	66	71	15.0000
GAAAG	chr11:75114079-75114321(+)$1	242	66	71	15.0000
gaaag	chr3:50003547-50003812(+)$1	265	28	33	15.0000
GAAAG	chr2:55207080-55207372(-)$1	292	161	166	15.0000
GAAAG	chr3:187458263-187458538(-)$1	275	156	161	15.0000
gaaag	chr19:55609276-55609582(-)$1	306	52	57	15.0000
gaaag	chr10:35739032-35739302(+)$1	270	19	24	15.0000
gaaag	chr6:27096474-27096779(-)$1	305	214	219	15.0000

#otherMatches

#Struct PSSM
FFFFF	chr8:37754754-37755066(-)$1	312	15	20	15.0000
&&&&&	chr21:35476760-35477070(+)$1	310	56	61	15.0000
GGGGG	chr21:15870287-15870553(-)$1	266	3	8	15.0000
bb333	chr9:138833608-138833878(-)$1	270	164	169	15.0000
J____	chr3:128218744-128219001(+)$1	257	193	198	15.0000
bb777	chr1:35656533-35656810(-)$1	277	125	130	15.0000
e5555	chr17:54974796-54975078(-)$1	282	226	231	15.0000
b333e	chr21:36249388-36249685(-)$1	297	176	181	15.0000
cc]bb	chr11:3071909-3072261(-)$1	352	133	138	15.0000
::ggg	chr16:20696155-20696386(+)$1	231	3	8	15.0000
:::::	chr16:70302445-70302705(-)$1	260	199	204	15.0000
Ggggg	chr22:19392393-19392649(-)$1	256	62	67	15.0000
bbmmm	chr1:36393154-36393467(+)$1	313	127	132	15.0000
BBKKB	chr20:57226405-57226658(+)$1	253	46	51	15.0000
:::::	chr22:22122454-22122731(-)$1	277	156	161	15.0000
FF::i	chr3:119177895-119178177(-)$1	282	121	126	15.0000
EEEEE	chr20:5526311-5526586(-)$1	275	88	93	15.0000
fffff	chr12:121772370-121772679(-)$1	309	128	133	15.0000
nnn==	chr3:6550883-6551140(+)$1	257	55	60	15.0000
:::::	chr7:155507012-155507274(+)$1	262	253	258	15.0000
ppppd	chr17:17721824-17722120(-)$1	296	126	131	15.0000
gggge	chr10:62545625-62545966(+)$1	341	218	223	15.0000
yyyyy	chr22:17086391-17086652(+)$1	261	75	80	15.0000
::::C	chr20:34312412-34312680(-)$1	268	231	236	15.0000
::::F	chr4:139098434-139098748(-)$1	314	129	134	15.0000
gg::f	chr9:134079652-134079926(+)$1	274	119	124	15.0000
:::::	chr20:5549592-5549858(-)$1	266	37	42	15.0000
ddd!!	chr7:158532643-158532914(-)$1	271	228	233	15.0000
:::::	chr7:140397202-140397513(+)$1	311	1	6	15.0000
^^^^^	chr1:29224070-29224319(+)$1	249	118	123	15.0000
nnnne	chr19:52597686-52597948(-)$1	262	176	181	15.0000
:::::	chr9:37219999-37220304(+)$1	305	2	7	15.0000
$$$$$	chr14:39650061-39650320(+)$1	259	85	90	15.0000
333hh	chr1:161088100-161088509(+)$1	409	99	104	15.0000
h"""b	chr3:9432227-9432493(-)$1	266	163	168	15.0000
DDDCC	chr19:54971360-54971586(+)$1	226	17	22	15.0000
e:::F	chr17:45024333-45024645(+)$1	312	105	110	15.0000
=[eee	chr7:151208406-151208724(-)$1	318	166	171	15.0000
qqqgg	chr21:15886390-15886706(-)$1	316	116	121	15.0000
ppppb	chr2:27820357-27820627(+)$1	270	211	216	15.0000
:::::	chr6:31595116-31595414(+)$1	298	66	71	15.0000
nnnnn	chr11:75114079-75114321(+)$1	242	66	71	15.0000
hhhh%	chr3:50003547-50003812(+)$1	265	28	33	15.0000
::::b	chr2:55207080-55207372(-)$1	292	161	166	15.0000
CKKDD	chr3:187458263-187458538(-)$1	275	156	161	15.0000
e22ee	chr19:55609276-55609582(-)$1	306	52	57	15.0000
DDDD{	chr10:35739032-35739302(+)$1	270	19	24	15.0000
ccc::	chr6:27096474-27096779(-)$1	305	214	219	15.0000

#DB
(((((	chr8:37754754-37755066(-)$1	1	15	20	15.0000
.....	chr21:35476760-35477070(+)$1	1	56	61	15.0000
(((((	chr21:15870287-15870553(-)$1	1	3	8	15.0000
))...	chr9:138833608-138833878(-)$1	1	164	169	15.0000
)....	chr3:128218744-128219001(+)$1	1	193	198	15.0000
))...	chr1:35656533-35656810(-)$1	1	125	130	15.0000
)....	chr17:54974796-54975078(-)$1	1	226	231	15.0000
)...)	chr21:36249388-36249685(-)$1	1	176	181	15.0000
)).))	chr11:3071909-3072261(-)$1	1	133	138	15.0000
..(((	chr16:20696155-20696386(+)$1	1	3	8	15.0000
.....	chr16:70302445-70302705(-)$1	1	199	204	15.0000
(((((	chr22:19392393-19392649(-)$1	1	62	67	15.0000
((...	chr1:36393154-36393467(+)$1	1	127	132	15.0000
((..(	chr20:57226405-57226658(+)$1	1	46	51	15.0000
.....	chr22:22122454-22122731(-)$1	1	156	161	15.0000
((..(	chr3:119177895-119178177(-)$1	1	121	126	15.0000
(((((	chr20:5526311-5526586(-)$1	1	88	93	15.0000
(((((	chr12:121772370-121772679(-)$1	1	128	133	15.0000
...))	chr3:6550883-6551140(+)$1	1	55	60	15.0000
.....	chr7:155507012-155507274(+)$1	1	253	258	15.0000
....)	chr17:17721824-17722120(-)$1	1	126	131	15.0000
(((((	chr10:62545625-62545966(+)$1	1	218	223	15.0000
.....	chr22:17086391-17086652(+)$1	1	75	80	15.0000
....)	chr20:34312412-34312680(-)$1	1	231	236	15.0000
....(	chr4:139098434-139098748(-)$1	1	129	134	15.0000
))..(	chr9:134079652-134079926(+)$1	1	119	124	15.0000
.....	chr20:5549592-5549858(-)$1	1	37	42	15.0000
(((..	chr7:158532643-158532914(-)$1	1	228	233	15.0000
.....	chr7:140397202-140397513(+)$1	1	1	6	15.0000
.....	chr1:29224070-29224319(+)$1	1	118	123	15.0000
....)	chr19:52597686-52597948(-)$1	1	176	181	15.0000
.....	chr9:37219999-37220304(+)$1	1	2	7	15.0000
.....	chr14:39650061-39650320(+)$1	1	85	90	15.0000
...))	chr1:161088100-161088509(+)$1	1	99	104	15.0000
(...(	chr3:9432227-9432493(-)$1	1	163	168	15.0000
(((((	chr19:54971360-54971586(+)$1	1	17	22	15.0000
)...(	chr17:45024333-45024645(+)$1	1	105	110	15.0000
(.(((	chr7:151208406-151208724(-)$1	1	166	171	15.0000
...))	chr21:15886390-15886706(-)$1	1	116	121	15.0000
....)	chr2:27820357-27820627(+)$1	1	211	216	15.0000
.....	chr6:31595116-31595414(+)$1	1	66	71	15.0000
.....	chr11:75114079-75114321(+)$1	1	66	71	15.0000
((((.	chr3:50003547-50003812(+)$1	1	28	33	15.0000
....(	chr2:55207080-55207372(-)$1	1	161	166	15.0000
(..((	chr3:187458263-187458538(-)$1	1	156	161	15.0000
)..))	chr19:55609276-55609582(-)$1	1	52	57	15.0000
((((.	chr10:35739032-35739302(+)$1	1	19	24	15.0000
)))..	chr6:27096474-27096779(-)$1	1	214	219	15.0000

#PSSM
G : 0.68	g : 0.31	
A : 0.68	a : 0.31	
A : 0.68	a : 0.31	
A : 0.68	a : 0.31	
G : 0.66	g : 0.33	

#score	720.0
#seq	48
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_transcript_m3_run1.nuc.txt

#NT
GACGUACGCGGCAGCGGCGUCCUGGCCACGCUGAGCCUGCGGGACUGCAAGCUGCAGGAGGUgggcgcgcgcggggacccggcggggcgggggcgggccggggAGUACGCGGUCCGGGGACUUAGCGGGAACCGGGCCAUAGAGGGAGGGGGACACACAAAGGGGGUUGCUGGCGCGACUGUCCGCGCGGAAGGUUGGCUCUAGGACCUGACUACACGAGGCCGUCUGGAAGCGAGGACAGCAAGCCGCUGAGCGAGAGGCGAGGGGAGCCGGGCUUGGGUGCGGGUAGGGGGCGGAG	chr1:16533201-16533520(-)$1	319	18	316	399.0000

#otherMatches

#Struct PSSM
FFJJJJJJJJJJKKA{HHHHHHHHddddggggggg!!a[bb[dddd!!bblllbb]dddd]bb]a4444ggggggg]dddd:gggggggqqqqqqqqgggggggccc[ddddmmmmdddd]ccc::HHHHHHHHAYYJJJJJJJJJJ:::::::::::::ddddammmma]dddd::::::hhhhhhhh!!ggggggg!!ccclllccc22ggggggg4444hhhhhhhh:::FFFFFF}EEEEE::===========rrrrrrrrr===========:::ffffff[eeeeemmmme	chrX:153209708-153210030(-)$1	322	11	309	399.0000
{BBBB{DDDD{GGGGGGG{DDDD:ccc[dddd"""gggggggrrrrrrrrrggggggg]ddddcccccc[bb$$$$$ffffff"""bbmmmmbb22ffffff22bb]cccggggggg"""bbmmmmbb333ggggggg::::::::::::::::::::::DDDD}GGGGGGG}DDDDBB:::FFFFFFKKCCC{HHHHHHHH:bb[cccrrrrrrrrrcccbbddddqqqqqqqqdddd:::::ccc[bbnnnnnbb]ccc::::HHHHHHHH}CCCYYFFFFFFBB}EEEEE~~~~D	chr1:16533201-16533520(-)$1	319	18	316	399.0000

#DB
((((((((((((..(.(((((((((((((((((((..(.((.((((..((...)).)))).)).)....))))))).)))).(((((((........)))))))(((.((((....)))).)))..)))))))))..)))))))))).............(((((....).))))......((((((((..(((((((..(((...)))..)))))))....))))))))...)))))).)))))..(((((((((((.........)))))))))))...((((((.(((((....)	chrX:153209708-153210030(-)$1	1	11	309	399.0000
.((((.((((.(((((((.((((.(((.((((...(((((((.........))))))).)))))))(((.((.....((((((...((....))..))))))..)).)))(((((((...((....))...)))))))......................)))).))))))).))))))...((((((..(((.((((((((.((.(((.........)))))((((........)))).....(((.((.....)).)))....)))))))).)))..)))))))).)))))....)	chr1:16533201-16533520(-)$1	1	18	316	399.0000

#PSSM
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
U : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
A : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	

#score	798.0
#seq	2
#width	298
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_transcript_m1_run2.nuc.txt

#NT
AGG	chr17:27050361-27050610(+)$1	249	132	135	9.0000
agg	chr11:17097255-17097470(-)$1	215	99	102	9.0000
AGG	chr10:70101465-70101709(+)$1	244	56	59	9.0000
AGG	chr16:2820156-2820430(+)$1	274	70	73	9.0000
AGG	chr16:28848265-28848530(+)$1	265	5	8	9.0000
agg	chr17:18965308-18965550(+)$1	242	4	7	9.0000
AGG	chr16:70571843-70572100(+)$1	257	0	3	9.0000
AGG	chr11:62297232-62297514(-)$1	282	8	11	9.0000
AGG	chr11:62298387-62298640(-)$1	253	29	32	9.0000
AGG	chr17:19093316-19093602(-)$1	286	24	27	9.0000
AGG	chr22:19711121-19711387(+)$1	266	19	22	9.0000
AGG	chr20:26189854-26190127(-)$1	273	21	24	9.0000
AGG	chr16:2820991-2821295(+)$1	304	2	5	9.0000
AGG	chr17:56408718-56408967(-)$1	249	9	12	9.0000
AGG	chr11:62283507-62283768(-)$1	261	51	54	9.0000
AGG	chr1:155288122-155288378(+)$1	256	18	21	9.0000
AGG	chr2:220403042-220403331(+)$1	289	24	27	9.0000
agg	chrM:4319-4541(+)$1	222	12	15	9.0000
AGG	chr11:62284203-62284436(-)$1	233	46	49	9.0000
agg	chr11:17097232-17097454(-)$1	222	83	86	9.0000
agg	chr9:100777550-100777862(+)$1	312	95	98	9.0000
AGG	chr2:203141071-203141334(+)$1	263	21	24	9.0000
AGG	chr20:26190112-26190353(-)$1	241	75	78	9.0000
AGG	chr1:109642782-109642999(+)$1	217	37	40	9.0000
AGG	chr16:28847428-28847693(+)$1	265	13	16	9.0000
AGG	chr16:2015157-2015412(+)$1	255	140	143	9.0000
agg	chr20:26190355-26190580(-)$1	225	115	118	9.0000
AGG	chr11:62286001-62286236(-)$1	235	1	4	9.0000
AGG	chr11:62294507-62294760(-)$1	253	67	70	9.0000
AGG	chrM:516-718(+)$1	202	136	139	9.0000
agg	chr7:120897037-120897295(+)$1	258	93	96	9.0000
AGG	chr12:6619588-6619817(+)$1	229	24	27	9.0000
AGG	chr11:122929515-122929719(-)$1	204	118	121	9.0000
AGG	chr11:62297190-62297432(-)$1	242	7	10	9.0000
AGG	chr6:43745345-43745602(+)$1	257	10	13	9.0000
agg	chr6:34664399-34664668(-)$1	269	31	34	9.0000
AGG	chrM:4359-4562(+)$1	203	47	50	9.0000
agg	chr7:119432970-119433228(-)$1	258	31	34	9.0000
AGG	chr19:3053628-3053889(-)$1	261	8	11	9.0000
AGG	chr2:232319808-232320076(-)$1	268	46	49	9.0000
agg	chr7:119437851-119438198(-)$1	347	32	35	9.0000
AGG	chr11:62300880-62301181(-)$1	301	3	6	9.0000
AGG	chr11:93454857-93455084(+)$1	227	41	44	9.0000
AGG	chr2:101889380-101889595(-)$1	215	5	8	9.0000
agg	chr11:35685049-35685307(+)$1	258	10	13	9.0000
AGG	chr1:109642773-109642982(+)$1	209	46	49	9.0000
AGG	chrX:20154130-20154410(-)$1	280	17	20	9.0000
AGG	chr17:19091310-19091513(+)$1	203	7	10	9.0000
agg	chr14:23528279-23528616(-)$1	337	15	18	9.0000
AGG	chr1:109642767-109642973(+)$1	206	2	5	9.0000
AGG	chr11:62284904-62285131(-)$1	227	15	18	9.0000
AGG	chr17:18965184-18965414(+)$1	230	20	23	9.0000
AGG	chr14:39649800-39650031(+)$1	231	23	26	9.0000
AGG	chr3:37366594-37366851(+)$1	257	57	60	9.0000
AGG	chr11:82869286-82869527(+)$1	241	42	45	9.0000
AGG	chr6:111136056-111136365(-)$1	309	42	45	9.0000
agg	chr17:34171748-34172015(+)$1	267	3	6	9.0000
AGG	chr2:97525522-97525809(-)$1	287	19	22	9.0000
AGG	chrX:152956626-152956833(+)$1	207	2	5	9.0000
AGG	chr6:43745813-43746070(+)$1	257	7	10	9.0000
AGG	chr7:97481370-97481639(-)$1	269	67	70	9.0000
AGG	chr9:100774602-100774855(+)$1	253	98	101	9.0000
AGG	chr17:74557633-74557885(+)$1	252	127	130	9.0000
AGG	chr16:89040189-89040449(-)$1	260	14	17	9.0000
agg	chr1:90493039-90493329(+)$1	290	0	3	9.0000
AGG	chr17:34171875-34172138(+)$1	263	23	26	9.0000
agg	chr1:150192890-150193164(-)$1	274	5	8	9.0000
AGG	chr7:45144352-45144588(-)$1	236	88	91	9.0000
AGG	chr1:173835915-173836166(-)$1	251	36	39	9.0000
AGG	chr11:62290434-62290675(-)$1	241	8	11	9.0000
AGG	chr7:150067360-150067652(+)$1	292	14	17	9.0000
agg	chr11:17097270-17097510(-)$1	240	139	142	9.0000
AGG	chr17:19091313-19091544(+)$1	231	4	7	9.0000
AGG	chr11:62300140-62300427(-)$1	287	46	49	9.0000
AGG	chr19:2270033-2270312(+)$1	279	7	10	9.0000
AGG	chr11:93454813-93455057(+)$1	244	4	7	9.0000
AGG	chr7:158424080-158424350(-)$1	270	23	26	9.0000
agg	chr1:150195411-150195668(-)$1	257	100	103	9.0000
AGG	chr2:203142737-203143009(+)$1	272	59	62	9.0000
AGG	chr19:3982404-3982652(-)$1	248	42	45	9.0000
AGG	chr11:62300405-62300651(-)$1	246	9	12	9.0000
AGG	chr17:19091285-19091510(+)$1	225	23	26	9.0000
AGG	chr11:122929530-122929788(-)$1	258	20	23	9.0000
AGG	chr19:2269985-2270233(+)$1	248	23	26	9.0000
AGG	chr11:62300306-62300605(-)$1	299	42	45	9.0000
AGG	chr17:56080815-56081102(-)$1	287	21	24	9.0000
AGG	chr4:39699762-39700068(+)$1	306	16	19	9.0000
AGG	chrX:135961270-135961484(-)$1	214	5	8	9.0000
AGG	chr5:177022806-177023059(+)$1	253	72	75	9.0000
AGG	chr19:10406575-10406898(+)$1	323	38	41	9.0000
AGG	chr11:62285720-62285971(-)$1	251	3	6	9.0000
AGG	chr19:13054502-13054836(+)$1	334	3	6	9.0000
AGG	chrX:135961254-135961461(-)$1	207	3	6	9.0000
AGG	chr14:70238205-70238473(+)$1	268	92	95	9.0000
agg	chr17:34171562-34171871(+)$1	309	117	120	9.0000
agg	chr9:100777545-100777750(+)$1	205	100	103	9.0000
AGG	chr11:93454891-93455142(+)$1	251	7	10	9.0000

#otherMatches

#Struct PSSM
LHH	chr9:134083156-134083434(+)$1	278	24	27	9.0000
:::	chr17:27050361-27050610(+)$1	249	132	135	9.0000
ggg	chr11:17097255-17097470(-)$1	215	99	102	9.0000
888	chr10:70101465-70101709(+)$1	244	56	59	9.0000
hhh	chr16:2820156-2820430(+)$1	274	70	73	9.0000
"cc	chr16:28848265-28848530(+)$1	265	5	8	9.0000
EEE	chr17:18965308-18965550(+)$1	242	4	7	9.0000
:cc	chr16:70571843-70572100(+)$1	257	0	3	9.0000
:::	chr11:62297232-62297514(-)$1	282	8	11	9.0000
:EE	chr11:62298387-62298640(-)$1	253	29	32	9.0000
NNN	chr17:19093316-19093602(-)$1	286	24	27	9.0000
[dd	chr22:19711121-19711387(+)$1	266	19	22	9.0000
III	chr20:26189854-26190127(-)$1	273	21	24	9.0000
{DD	chr16:2820991-2821295(+)$1	304	2	5	9.0000
CC:	chr17:56408718-56408967(-)$1	249	9	12	9.0000
ppp	chr11:62283507-62283768(-)$1	261	51	54	9.0000
ccc	chr1:155288122-155288378(+)$1	256	18	21	9.0000
eee	chr2:220403042-220403331(+)$1	289	24	27	9.0000
ccc	chrM:4319-4541(+)$1	222	12	15	9.0000
"gg	chr11:62284203-62284436(-)$1	233	46	49	9.0000
ggg	chr11:17097232-17097454(-)$1	222	83	86	9.0000
ggg	chr9:100777550-100777862(+)$1	312	95	98	9.0000
{CC	chr2:203141071-203141334(+)$1	263	21	24	9.0000
ff[	chr20:26190112-26190353(-)$1	241	75	78	9.0000
nnn	chr1:109642782-109642999(+)$1	217	37	40	9.0000
:GG	chr16:28847428-28847693(+)$1	265	13	16	9.0000
eee	chr16:2015157-2015412(+)$1	255	140	143	9.0000
eee	chr20:26190355-26190580(-)$1	225	115	118	9.0000
:ee	chr11:62286001-62286236(-)$1	235	1	4	9.0000
dd5	chr11:62294507-62294760(-)$1	253	67	70	9.0000
:HH	chrM:516-718(+)$1	202	136	139	9.0000
:::	chr7:120897037-120897295(+)$1	258	93	96	9.0000
::e	chr12:6619588-6619817(+)$1	229	24	27	9.0000
ddd	chr11:122929515-122929719(-)$1	204	118	121	9.0000
:DD	chr11:62297190-62297432(-)$1	242	7	10	9.0000
:::	chr6:43745345-43745602(+)$1	257	10	13	9.0000
qqq	chr6:34664399-34664668(-)$1	269	31	34	9.0000
ccc	chrM:4359-4562(+)$1	203	47	50	9.0000
:EE	chr7:119432970-119433228(-)$1	258	31	34	9.0000
DUU	chr19:3053628-3053889(-)$1	261	8	11	9.0000
b22	chr2:232319808-232320076(-)$1	268	46	49	9.0000
ddd	chr7:119437851-119438198(-)$1	347	32	35	9.0000
FFF	chr11:62300880-62301181(-)$1	301	3	6	9.0000
III	chr11:93454857-93455084(+)$1	227	41	44	9.0000
[bb	chr2:101889380-101889595(-)$1	215	5	8	9.0000
:bb	chr11:35685049-35685307(+)$1	258	10	13	9.0000
nnn	chr1:109642773-109642982(+)$1	209	46	49	9.0000
:dd	chrX:20154130-20154410(-)$1	280	17	20	9.0000
:bb	chr17:19091310-19091513(+)$1	203	7	10	9.0000
ppp	chr14:23528279-23528616(-)$1	337	15	18	9.0000
:CC	chr1:109642767-109642973(+)$1	206	2	5	9.0000
MMM	chr11:62284904-62285131(-)$1	227	15	18	9.0000
NNN	chr17:18965184-18965414(+)$1	230	20	23	9.0000
a]c	chr14:39649800-39650031(+)$1	231	23	26	9.0000
DDK	chr3:37366594-37366851(+)$1	257	57	60	9.0000
ggg	chr11:82869286-82869527(+)$1	241	42	45	9.0000
!!b	chr6:111136056-111136365(-)$1	309	42	45	9.0000
::F	chr17:34171748-34172015(+)$1	267	3	6	9.0000
JJJ	chr2:97525522-97525809(-)$1	287	19	22	9.0000
:bb	chrX:152956626-152956833(+)$1	207	2	5	9.0000
{GG	chr6:43745813-43746070(+)$1	257	7	10	9.0000
:::	chr7:97481370-97481639(-)$1	269	67	70	9.0000
g!!	chr9:100774602-100774855(+)$1	253	98	101	9.0000
eee	chr17:74557633-74557885(+)$1	252	127	130	9.0000
FFF	chr16:89040189-89040449(-)$1	260	14	17	9.0000
:::	chr1:90493039-90493329(+)$1	290	0	3	9.0000
ooo	chr17:34171875-34172138(+)$1	263	23	26	9.0000
:cc	chr1:150192890-150193164(-)$1	274	5	8	9.0000
3cc	chr7:45144352-45144588(-)$1	236	88	91	9.0000
E{A	chr1:173835915-173836166(-)$1	251	36	39	9.0000
ccc	chr11:62290434-62290675(-)$1	241	8	11	9.0000
:HH	chr7:150067360-150067652(+)$1	292	14	17	9.0000
ggg	chr11:17097270-17097510(-)$1	240	139	142	9.0000
LLL	chr17:19091313-19091544(+)$1	231	4	7	9.0000
eee	chr11:62300140-62300427(-)$1	287	46	49	9.0000
::E	chr19:2270033-2270312(+)$1	279	7	10	9.0000
[a[	chr11:93454813-93455057(+)$1	244	4	7	9.0000
hgg	chr7:158424080-158424350(-)$1	270	23	26	9.0000
bb2	chr1:150195411-150195668(-)$1	257	100	103	9.0000
iii	chr2:203142737-203143009(+)$1	272	59	62	9.0000
ggg	chr19:3982404-3982652(-)$1	248	42	45	9.0000
===	chr11:62300405-62300651(-)$1	246	9	12	9.0000
NNN	chr17:19091285-19091510(+)$1	225	23	26	9.0000
:cc	chr11:122929530-122929788(-)$1	258	20	23	9.0000
""a	chr19:2269985-2270233(+)$1	248	23	26	9.0000
lld	chr11:62300306-62300605(-)$1	299	42	45	9.0000
fff	chr17:56080815-56081102(-)$1	287	21	24	9.0000
:hh	chr4:39699762-39700068(+)$1	306	16	19	9.0000
iii	chrX:135961270-135961484(-)$1	214	5	8	9.0000
HHH	chr5:177022806-177023059(+)$1	253	72	75	9.0000
cce	chr19:10406575-10406898(+)$1	323	38	41	9.0000
:::	chr11:62285720-62285971(-)$1	251	3	6	9.0000
:::	chr19:13054502-13054836(+)$1	334	3	6	9.0000
eee	chrX:135961254-135961461(-)$1	207	3	6	9.0000
HHH	chr14:70238205-70238473(+)$1	268	92	95	9.0000
3cc	chr17:34171562-34171871(+)$1	309	117	120	9.0000
ggg	chr9:100777545-100777750(+)$1	205	100	103	9.0000
{BB	chr11:93454891-93455142(+)$1	251	7	10	9.0000

#DB
.((	chr9:134083156-134083434(+)$1	1	24	27	9.0000
...	chr17:27050361-27050610(+)$1	1	132	135	9.0000
(((	chr11:17097255-17097470(-)$1	1	99	102	9.0000
...	chr10:70101465-70101709(+)$1	1	56	59	9.0000
(((	chr16:2820156-2820430(+)$1	1	70	73	9.0000
.((	chr16:28848265-28848530(+)$1	1	5	8	9.0000
(((	chr17:18965308-18965550(+)$1	1	4	7	9.0000
.((	chr16:70571843-70572100(+)$1	1	0	3	9.0000
...	chr11:62297232-62297514(-)$1	1	8	11	9.0000
.((	chr11:62298387-62298640(-)$1	1	29	32	9.0000
...	chr17:19093316-19093602(-)$1	1	24	27	9.0000
.((	chr22:19711121-19711387(+)$1	1	19	22	9.0000
(((	chr20:26189854-26190127(-)$1	1	21	24	9.0000
.((	chr16:2820991-2821295(+)$1	1	2	5	9.0000
((.	chr17:56408718-56408967(-)$1	1	9	12	9.0000
...	chr11:62283507-62283768(-)$1	1	51	54	9.0000
)))	chr1:155288122-155288378(+)$1	1	18	21	9.0000
(((	chr2:220403042-220403331(+)$1	1	24	27	9.0000
)))	chrM:4319-4541(+)$1	1	12	15	9.0000
.((	chr11:62284203-62284436(-)$1	1	46	49	9.0000
(((	chr11:17097232-17097454(-)$1	1	83	86	9.0000
)))	chr9:100777550-100777862(+)$1	1	95	98	9.0000
.((	chr2:203141071-203141334(+)$1	1	21	24	9.0000
((.	chr20:26190112-26190353(-)$1	1	75	78	9.0000
...	chr1:109642782-109642999(+)$1	1	37	40	9.0000
.((	chr16:28847428-28847693(+)$1	1	13	16	9.0000
(((	chr16:2015157-2015412(+)$1	1	140	143	9.0000
)))	chr20:26190355-26190580(-)$1	1	115	118	9.0000
.((	chr11:62286001-62286236(-)$1	1	1	4	9.0000
)).	chr11:62294507-62294760(-)$1	1	67	70	9.0000
.))	chrM:516-718(+)$1	1	136	139	9.0000
...	chr7:120897037-120897295(+)$1	1	93	96	9.0000
..(	chr12:6619588-6619817(+)$1	1	24	27	9.0000
)((	chr11:122929515-122929719(-)$1	1	118	121	9.0000
.((	chr11:62297190-62297432(-)$1	1	7	10	9.0000
...	chr6:43745345-43745602(+)$1	1	10	13	9.0000
...	chr6:34664399-34664668(-)$1	1	31	34	9.0000
)))	chrM:4359-4562(+)$1	1	47	50	9.0000
.((	chr7:119432970-119433228(-)$1	1	31	34	9.0000
(..	chr19:3053628-3053889(-)$1	1	8	11	9.0000
)..	chr2:232319808-232320076(-)$1	1	46	49	9.0000
(((	chr7:119437851-119438198(-)$1	1	32	35	9.0000
(((	chr11:62300880-62301181(-)$1	1	3	6	9.0000
(((	chr11:93454857-93455084(+)$1	1	41	44	9.0000
.((	chr2:101889380-101889595(-)$1	1	5	8	9.0000
.((	chr11:35685049-35685307(+)$1	1	10	13	9.0000
...	chr1:109642773-109642982(+)$1	1	46	49	9.0000
.((	chrX:20154130-20154410(-)$1	1	17	20	9.0000
.((	chr17:19091310-19091513(+)$1	1	7	10	9.0000
...	chr14:23528279-23528616(-)$1	1	15	18	9.0000
.((	chr1:109642767-109642973(+)$1	1	2	5	9.0000
...	chr11:62284904-62285131(-)$1	1	15	18	9.0000
...	chr17:18965184-18965414(+)$1	1	20	23	9.0000
).)	chr14:39649800-39650031(+)$1	1	23	26	9.0000
((.	chr3:37366594-37366851(+)$1	1	57	60	9.0000
)))	chr11:82869286-82869527(+)$1	1	42	45	9.0000
..(	chr6:111136056-111136365(-)$1	1	42	45	9.0000
..(	chr17:34171748-34172015(+)$1	1	3	6	9.0000
(((	chr2:97525522-97525809(-)$1	1	19	22	9.0000
.((	chrX:152956626-152956833(+)$1	1	2	5	9.0000
.((	chr6:43745813-43746070(+)$1	1	7	10	9.0000
...	chr7:97481370-97481639(-)$1	1	67	70	9.0000
(..	chr9:100774602-100774855(+)$1	1	98	101	9.0000
)))	chr17:74557633-74557885(+)$1	1	127	130	9.0000
(((	chr16:89040189-89040449(-)$1	1	14	17	9.0000
...	chr1:90493039-90493329(+)$1	1	0	3	9.0000
...	chr17:34171875-34172138(+)$1	1	23	26	9.0000
.((	chr1:150192890-150193164(-)$1	1	5	8	9.0000
.))	chr7:45144352-45144588(-)$1	1	88	91	9.0000
(.(	chr1:173835915-173836166(-)$1	1	36	39	9.0000
(((	chr11:62290434-62290675(-)$1	1	8	11	9.0000
.((	chr7:150067360-150067652(+)$1	1	14	17	9.0000
(((	chr11:17097270-17097510(-)$1	1	139	142	9.0000
...	chr17:19091313-19091544(+)$1	1	4	7	9.0000
(((	chr11:62300140-62300427(-)$1	1	46	49	9.0000
..(	chr19:2270033-2270312(+)$1	1	7	10	9.0000
.(.	chr11:93454813-93455057(+)$1	1	4	7	9.0000
(((	chr7:158424080-158424350(-)$1	1	23	26	9.0000
)).	chr1:150195411-150195668(-)$1	1	100	103	9.0000
)))	chr2:203142737-203143009(+)$1	1	59	62	9.0000
(((	chr19:3982404-3982652(-)$1	1	42	45	9.0000
(((	chr11:62300405-62300651(-)$1	1	9	12	9.0000
...	chr17:19091285-19091510(+)$1	1	23	26	9.0000
.((	chr11:122929530-122929788(-)$1	1	20	23	9.0000
..(	chr19:2269985-2270233(+)$1	1	23	26	9.0000
..)	chr11:62300306-62300605(-)$1	1	42	45	9.0000
)))	chr17:56080815-56081102(-)$1	1	21	24	9.0000
.((	chr4:39699762-39700068(+)$1	1	16	19	9.0000
(((	chrX:135961270-135961484(-)$1	1	5	8	9.0000
)))	chr5:177022806-177023059(+)$1	1	72	75	9.0000
(((	chr19:10406575-10406898(+)$1	1	38	41	9.0000
...	chr11:62285720-62285971(-)$1	1	3	6	9.0000
...	chr19:13054502-13054836(+)$1	1	3	6	9.0000
(((	chrX:135961254-135961461(-)$1	1	3	6	9.0000
(((	chr14:70238205-70238473(+)$1	1	92	95	9.0000
.))	chr17:34171562-34171871(+)$1	1	117	120	9.0000
)))	chr9:100777545-100777750(+)$1	1	100	103	9.0000
.((	chr11:93454891-93455142(+)$1	1	7	10	9.0000

#PSSM
A : 0.80	a : 0.19	
G : 0.80	g : 0.19	
G : 0.80	g : 0.19	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_CDS_m3_run1.nuc.txt

#NT
UCCU	chr15:44085884-44086141(+)$1	257	159	163	12.0000
UCCU	chr17:80197156-80197379(+)$1	223	86	90	12.0000
UCCU	chr2:113890221-113890466(+)$1	245	126	130	12.0000
UCCU	chr17:80006519-80006754(-)$1	235	60	64	12.0000
UCCU	chr16:57416834-57417060(+)$1	226	93	97	12.0000
UCCU	chr21:46934720-46935044(-)$1	324	73	77	12.0000
UCCU	chr16:417363-417709(-)$1	346	44	48	12.0000
uccu	chr19:18704278-18704534(-)$1	256	74	78	12.0000
UCCU	chr21:45879744-45879976(+)$1	232	93	97	12.0000
UCCU	chr17:79826298-79826577(-)$1	279	25	29	12.0000
UCCU	chr8:144103098-144103347(+)$1	249	194	198	12.0000
UCCU	chr22:37865739-37866038(-)$1	299	39	43	12.0000
UCCU	chr3:48511029-48511268(-)$1	239	102	106	12.0000
UCCU	chr19:1578335-1578592(-)$1	257	6	10	12.0000
UCCU	chr20:25207096-25207378(+)$1	282	101	105	12.0000
UCCU	chr20:25206119-25206389(+)$1	270	167	171	12.0000
UCCU	chr15:44085986-44086259(+)$1	273	57	61	12.0000
UCCU	chr17:37903027-37903312(+)$1	285	76	80	12.0000
UCCU	chr17:80196510-80196756(+)$1	246	73	77	12.0000
UCCU	chr16:18800201-18800454(-)$1	253	3	7	12.0000
UCCU	chrX:48761790-48762082(-)$1	292	174	178	12.0000
UCCU	chr22:24125816-24126165(+)$1	349	30	34	12.0000
UCCU	chr14:105222869-105223170(+)$1	301	33	37	12.0000
UCCU	chr17:79890645-79890882(-)$1	237	12	16	12.0000
UCCU	chr12:120534700-120534953(-)$1	253	51	55	12.0000
UCCU	chr5:10680692-10680961(-)$1	269	102	106	12.0000
UCCU	chr17:17715203-17715490(-)$1	287	1	5	12.0000
UCCU	chr17:79801308-79801562(-)$1	254	10	14	12.0000
UCCU	chr19:47341401-47341808(-)$1	407	28	32	12.0000
UCCU	chr22:41972966-41973400(-)$1	434	15	19	12.0000
UCCU	chr22:39131921-39132222(-)$1	301	100	104	12.0000
UCCU	chr2:130910034-130910284(-)$1	250	98	102	12.0000
UCCU	chr19:45853865-45854143(-)$1	278	146	150	12.0000
UCCU	chr16:633060-633399(+)$1	339	61	65	12.0000
UCCU	chr1:156219556-156219821(-)$1	265	59	63	12.0000
UCCU	chr8:134250996-134251233(-)$1	237	104	108	12.0000
UCCU	chr2:42990971-42991268(-)$1	297	9	13	12.0000
UCCU	chr22:24125965-24126256(+)$1	291	32	36	12.0000
UCCU	chr18:72187261-72187524(+)$1	263	79	83	12.0000
UCCU	chr1:6694594-6694867(-)$1	273	43	47	12.0000
UCCU	chr12:120534492-120534857(-)$1	365	23	27	12.0000
UCCU	chr18:2920213-2920482(-)$1	269	135	139	12.0000
UCCU	chr19:18279955-18280242(+)$1	287	247	251	12.0000
UCCU	chr19:1010274-1010562(-)$1	288	4	8	12.0000
UCCU	chr11:60703187-60703542(+)$1	355	57	61	12.0000
UCCU	chr16:66646826-66647095(+)$1	269	167	171	12.0000
UCCU	chr1:45241167-45241372(+)$1	205	162	166	12.0000
UCCU	chr19:39219952-39220229(+)$1	277	81	85	12.0000
UCCU	chr19:42364744-42364957(+)$1	213	161	165	12.0000
UCCU	chr16:30965271-30965539(+)$1	268	32	36	12.0000
UCCU	chr2:220085728-220085980(-)$1	252	123	127	12.0000
UCCU	chr16:1496230-1496489(-)$1	259	67	71	12.0000
UCCU	chr19:45496131-45496399(+)$1	268	34	38	12.0000
UCCU	chr17:74077990-74078249(-)$1	259	94	98	12.0000
UCCU	chr1:11810169-11810438(+)$1	269	116	120	12.0000
UCCU	chr20:61919628-61919960(+)$1	332	298	302	12.0000
UCCU	chr9:130169501-130169817(+)$1	316	147	151	12.0000
UCCU	chr19:3543272-3543524(-)$1	252	0	4	12.0000
UCCU	chr6:34213122-34213374(+)$1	252	2	6	12.0000
uccu	chr19:11256985-11257242(-)$1	257	9	13	12.0000
UCCU	chr15:44086059-44086295(+)$1	236	62	66	12.0000
UCCU	chr5:132202476-132202766(+)$1	290	76	80	12.0000
UCCU	chr19:58905844-58906062(+)$1	218	13	17	12.0000
UCCU	chr16:89712249-89712494(-)$1	245	71	75	12.0000
UCCU	chr16:28847591-28847984(+)$1	393	101	105	12.0000
UCCU	chr17:80197139-80197356(+)$1	217	103	107	12.0000
UCCU	chr14:21484864-21485190(-)$1	326	301	305	12.0000
UCCU	chr20:60962312-60962543(+)$1	231	161	165	12.0000
UCCU	chr11:770252-770509(-)$1	257	122	126	12.0000
UCCU	chr6:34213229-34213478(+)$1	249	15	19	12.0000
UCCU	chr16:57792306-57792636(-)$1	330	52	56	12.0000
UCCU	chr19:58905812-58906044(+)$1	232	19	23	12.0000
UCCU	chr17:46137159-46137399(+)$1	240	67	71	12.0000
UCCU	chr19:11242073-11242319(+)$1	246	107	111	12.0000
UCCU	chr2:85824511-85824800(+)$1	289	48	52	12.0000
uccu	chr19:14203485-14203731(-)$1	246	18	22	12.0000
UCCU	chr2:27664569-27664913(+)$1	344	101	105	12.0000
UCCU	chr16:4562347-4562627(-)$1	280	178	182	12.0000
UCCU	chr20:30156918-30157213(+)$1	295	19	23	12.0000
UCCU	chr9:139958955-139959219(-)$1	264	109	113	12.0000
UCCU	chr17:79782119-79782366(-)$1	247	228	232	12.0000

#otherMatches

#Struct PSSM
::::	chr17:79826501-79826765(-)$1	264	181	185	12.0000
HHHH	chr15:44085884-44086141(+)$1	257	159	163	12.0000
4ccc	chr17:80197156-80197379(+)$1	223	86	90	12.0000
22cc	chr2:113890221-113890466(+)$1	245	126	130	12.0000
"ccc	chr17:80006519-80006754(-)$1	235	60	64	12.0000
!!am	chr16:57416834-57417060(+)$1	226	93	97	12.0000
nnnn	chr21:46934720-46935044(-)$1	324	73	77	12.0000
FFFF	chr16:417363-417709(-)$1	346	44	48	12.0000
rrrr	chr19:18704278-18704534(-)$1	256	74	78	12.0000
]fff	chr21:45879744-45879976(+)$1	232	93	97	12.0000
!a!!	chr17:79826298-79826577(-)$1	279	25	29	12.0000
eeee	chr8:144103098-144103347(+)$1	249	194	198	12.0000
yyyy	chr22:37865739-37866038(-)$1	299	39	43	12.0000
G___	chr3:48511029-48511268(-)$1	239	102	106	12.0000
dd[a	chr19:1578335-1578592(-)$1	257	6	10	12.0000
::::	chr20:25207096-25207378(+)$1	282	101	105	12.0000
&eee	chr20:25206119-25206389(+)$1	270	167	171	12.0000
::::	chr15:44085986-44086259(+)$1	273	57	61	12.0000
lllg	chr17:37903027-37903312(+)$1	285	76	80	12.0000
oddd	chr17:80196510-80196756(+)$1	246	73	77	12.0000
D{A{	chr16:18800201-18800454(-)$1	253	3	7	12.0000
eeeC	chrX:48761790-48762082(-)$1	292	174	178	12.0000
i:EE	chr22:24125816-24126165(+)$1	349	30	34	12.0000
))))	chr14:105222869-105223170(+)$1	301	33	37	12.0000
:EEE	chr17:79890645-79890882(-)$1	237	12	16	12.0000
====	chr12:120534700-120534953(-)$1	253	51	55	12.0000
mmmm	chr5:10680692-10680961(-)$1	269	102	106	12.0000
::::	chr17:17715203-17715490(-)$1	287	1	5	12.0000
HHHH	chr17:79801308-79801562(-)$1	254	10	14	12.0000
ddhh	chr19:47341401-47341808(-)$1	407	28	32	12.0000
CC{F	chr22:41972966-41973400(-)$1	434	15	19	12.0000
eeee	chr22:39131921-39132222(-)$1	301	100	104	12.0000
GGGG	chr2:130910034-130910284(-)$1	250	98	102	12.0000
EEEE	chr19:45853865-45854143(-)$1	278	146	150	12.0000
MMMM	chr16:633060-633399(+)$1	339	61	65	12.0000
!!ee	chr1:156219556-156219821(-)$1	265	59	63	12.0000
lccc	chr8:134250996-134251233(-)$1	237	104	108	12.0000
&&&&	chr2:42990971-42991268(-)$1	297	9	13	12.0000
HDDD	chr22:24125965-24126256(+)$1	291	32	36	12.0000
^^^^	chr18:72187261-72187524(+)$1	263	79	83	12.0000
E:::	chr1:6694594-6694867(-)$1	273	43	47	12.0000
#bbn	chr12:120534492-120534857(-)$1	365	23	27	12.0000
ffff	chr18:2920213-2920482(-)$1	269	135	139	12.0000
>>>>	chr19:18279955-18280242(+)$1	287	247	251	12.0000
IIII	chr19:1010274-1010562(-)$1	288	4	8	12.0000
qqqq	chr11:60703187-60703542(+)$1	355	57	61	12.0000
JJJJ	chr16:66646826-66647095(+)$1	269	167	171	12.0000
2iii	chr1:45241167-45241372(+)$1	205	162	166	12.0000
cc[e	chr19:39219952-39220229(+)$1	277	81	85	12.0000
==cc	chr19:42364744-42364957(+)$1	213	161	165	12.0000
::ff	chr16:30965271-30965539(+)$1	268	32	36	12.0000
"ddd	chr2:220085728-220085980(-)$1	252	123	127	12.0000
F::g	chr16:1496230-1496489(-)$1	259	67	71	12.0000
iiii	chr19:45496131-45496399(+)$1	268	34	38	12.0000
++++	chr17:74077990-74078249(-)$1	259	94	98	12.0000
bb::	chr1:11810169-11810438(+)$1	269	116	120	12.0000
::DD	chr20:61919628-61919960(+)$1	332	298	302	12.0000
EEEE	chr9:130169501-130169817(+)$1	316	147	151	12.0000
::::	chr19:3543272-3543524(-)$1	252	0	4	12.0000
c!!d	chr6:34213122-34213374(+)$1	252	2	6	12.0000
GG{A	chr19:11256985-11257242(-)$1	257	9	13	12.0000
EEEK	chr15:44086059-44086295(+)$1	236	62	66	12.0000
FFFF	chr5:132202476-132202766(+)$1	290	76	80	12.0000
GGLL	chr19:58905844-58906062(+)$1	218	13	17	12.0000
mmmm	chr16:89712249-89712494(-)$1	245	71	75	12.0000
c22d	chr16:28847591-28847984(+)$1	393	101	105	12.0000
4ccc	chr17:80197139-80197356(+)$1	217	103	107	12.0000
DDDD	chr14:21484864-21485190(-)$1	326	301	305	12.0000
f333	chr20:60962312-60962543(+)$1	231	161	165	12.0000
&&ee	chr11:770252-770509(-)$1	257	122	126	12.0000
KFFF	chr6:34213229-34213478(+)$1	249	15	19	12.0000
NNNN	chr16:57792306-57792636(-)$1	330	52	56	12.0000
LLLD	chr19:58905812-58906044(+)$1	232	19	23	12.0000
ddde	chr17:46137159-46137399(+)$1	240	67	71	12.0000
g###	chr19:11242073-11242319(+)$1	246	107	111	12.0000
NNNN	chr2:85824511-85824800(+)$1	289	48	52	12.0000
::::	chr19:14203485-14203731(-)$1	246	18	22	12.0000
EE}C	chr2:27664569-27664913(+)$1	344	101	105	12.0000
rrrr	chr16:4562347-4562627(-)$1	280	178	182	12.0000
dddd	chr20:30156918-30157213(+)$1	295	19	23	12.0000
eee:	chr9:139958955-139959219(-)$1	264	109	113	12.0000
mmmm	chr17:79782119-79782366(-)$1	247	228	232	12.0000

#DB
....	chr17:79826501-79826765(-)$1	1	181	185	12.0000
))))	chr15:44085884-44086141(+)$1	1	159	163	12.0000
.)))	chr17:80197156-80197379(+)$1	1	86	90	12.0000
..))	chr2:113890221-113890466(+)$1	1	126	130	12.0000
.(((	chr17:80006519-80006754(-)$1	1	60	64	12.0000
..(.	chr16:57416834-57417060(+)$1	1	93	97	12.0000
....	chr21:46934720-46935044(-)$1	1	73	77	12.0000
((((	chr16:417363-417709(-)$1	1	44	48	12.0000
....	chr19:18704278-18704534(-)$1	1	74	78	12.0000
.)))	chr21:45879744-45879976(+)$1	1	93	97	12.0000
.(..	chr17:79826298-79826577(-)$1	1	25	29	12.0000
))))	chr8:144103098-144103347(+)$1	1	194	198	12.0000
....	chr22:37865739-37866038(-)$1	1	39	43	12.0000
)...	chr3:48511029-48511268(-)$1	1	102	106	12.0000
((.(	chr19:1578335-1578592(-)$1	1	6	10	12.0000
....	chr20:25207096-25207378(+)$1	1	101	105	12.0000
.(((	chr20:25206119-25206389(+)$1	1	167	171	12.0000
....	chr15:44085986-44086259(+)$1	1	57	61	12.0000
...)	chr17:37903027-37903312(+)$1	1	76	80	12.0000
.)))	chr17:80196510-80196756(+)$1	1	73	77	12.0000
(.(.	chr16:18800201-18800454(-)$1	1	3	7	12.0000
))))	chrX:48761790-48762082(-)$1	1	174	178	12.0000
).((	chr22:24125816-24126165(+)$1	1	30	34	12.0000
....	chr14:105222869-105223170(+)$1	1	33	37	12.0000
.(((	chr17:79890645-79890882(-)$1	1	12	16	12.0000
))))	chr12:120534700-120534953(-)$1	1	51	55	12.0000
....	chr5:10680692-10680961(-)$1	1	102	106	12.0000
....	chr17:17715203-17715490(-)$1	1	1	5	12.0000
((((	chr17:79801308-79801562(-)$1	1	10	14	12.0000
))((	chr19:47341401-47341808(-)$1	1	28	32	12.0000
((.(	chr22:41972966-41973400(-)$1	1	15	19	12.0000
))))	chr22:39131921-39132222(-)$1	1	100	104	12.0000
((((	chr2:130910034-130910284(-)$1	1	98	102	12.0000
((((	chr19:45853865-45854143(-)$1	1	146	150	12.0000
....	chr16:633060-633399(+)$1	1	61	65	12.0000
..((	chr1:156219556-156219821(-)$1	1	59	63	12.0000
.)))	chr8:134250996-134251233(-)$1	1	104	108	12.0000
....	chr2:42990971-42991268(-)$1	1	9	13	12.0000
((((	chr22:24125965-24126256(+)$1	1	32	36	12.0000
....	chr18:72187261-72187524(+)$1	1	79	83	12.0000
(...	chr1:6694594-6694867(-)$1	1	43	47	12.0000
.((.	chr12:120534492-120534857(-)$1	1	23	27	12.0000
))))	chr18:2920213-2920482(-)$1	1	135	139	12.0000
....	chr19:18279955-18280242(+)$1	1	247	251	12.0000
((((	chr19:1010274-1010562(-)$1	1	4	8	12.0000
....	chr11:60703187-60703542(+)$1	1	57	61	12.0000
((((	chr16:66646826-66647095(+)$1	1	167	171	12.0000
.)))	chr1:45241167-45241372(+)$1	1	162	166	12.0000
((.(	chr19:39219952-39220229(+)$1	1	81	85	12.0000
((((	chr19:42364744-42364957(+)$1	1	161	165	12.0000
..((	chr16:30965271-30965539(+)$1	1	32	36	12.0000
.(((	chr2:220085728-220085980(-)$1	1	123	127	12.0000
)..(	chr16:1496230-1496489(-)$1	1	67	71	12.0000
))))	chr19:45496131-45496399(+)$1	1	34	38	12.0000
....	chr17:74077990-74078249(-)$1	1	94	98	12.0000
))..	chr1:11810169-11810438(+)$1	1	116	120	12.0000
..))	chr20:61919628-61919960(+)$1	1	298	302	12.0000
))))	chr9:130169501-130169817(+)$1	1	147	151	12.0000
....	chr19:3543272-3543524(-)$1	1	0	4	12.0000
(..(	chr6:34213122-34213374(+)$1	1	2	6	12.0000
((.(	chr19:11256985-11257242(-)$1	1	9	13	12.0000
(((.	chr15:44086059-44086295(+)$1	1	62	66	12.0000
((((	chr5:132202476-132202766(+)$1	1	76	80	12.0000
((..	chr19:58905844-58906062(+)$1	1	13	17	12.0000
....	chr16:89712249-89712494(-)$1	1	71	75	12.0000
)..)	chr16:28847591-28847984(+)$1	1	101	105	12.0000
.)))	chr17:80197139-80197356(+)$1	1	103	107	12.0000
))))	chr14:21484864-21485190(-)$1	1	301	305	12.0000
)...	chr20:60962312-60962543(+)$1	1	161	165	12.0000
..((	chr11:770252-770509(-)$1	1	122	126	12.0000
.(((	chr6:34213229-34213478(+)$1	1	15	19	12.0000
....	chr16:57792306-57792636(-)$1	1	52	56	12.0000
...(	chr19:58905812-58906044(+)$1	1	19	23	12.0000
)))(	chr17:46137159-46137399(+)$1	1	67	71	12.0000
(...	chr19:11242073-11242319(+)$1	1	107	111	12.0000
....	chr2:85824511-85824800(+)$1	1	48	52	12.0000
....	chr19:14203485-14203731(-)$1	1	18	22	12.0000
)).)	chr2:27664569-27664913(+)$1	1	101	105	12.0000
....	chr16:4562347-4562627(-)$1	1	178	182	12.0000
))))	chr20:30156918-30157213(+)$1	1	19	23	12.0000
))).	chr9:139958955-139959219(-)$1	1	109	113	12.0000
....	chr17:79782119-79782366(-)$1	1	228	232	12.0000

#PSSM
U : 0.96	u : 0.03	
C : 0.96	c : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	

#score	984.0000000000001
#seq	82
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_CDS_m2_run2.nuc.txt

#NT
AGGUUUGGG	chr2:62100036-62100316(-)$1	280	213	222	19.5000
AGAUUUAGG	chr11:18425235-18425451(+)$1	216	60	69	17.0000
UGGUUUCGG	chr17:36453084-36453371(+)$1	287	119	128	16.3750
AGAUUUAGG	chr11:18425214-18425435(+)$1	221	81	90	17.0000
UGGGUUGGG	chr3:49050497-49050788(+)$1	291	134	143	14.5000
GGGUUUUGG	chr13:98828467-98828734(+)$1	267	226	235	16.3750
AGGUUUGGG	chr6:26285547-26285800(-)$1	253	99	108	19.5000

#otherMatches

#Struct PSSM
ffffmmmmf	chr6:31919696-31919947(+)$1	251	92	101	17.0000
2a]hhhhhh	chr2:62100036-62100316(-)$1	280	213	222	19.5000
dddhhhhhh	chr11:18425235-18425451(+)$1	216	60	69	17.0000
bbeeeee]b	chr17:36453084-36453371(+)$1	287	119	128	16.3750
dddhhhhhh	chr11:18425214-18425435(+)$1	221	81	90	17.0000
hhhhhlllh	chr3:49050497-49050788(+)$1	291	134	143	14.5000
EEEEE}GGG	chr13:98828467-98828734(+)$1	267	226	235	16.3750
6666hhhhh	chr6:26285547-26285800(-)$1	253	99	108	19.5000

#DB
((((....)	chr6:31919696-31919947(+)$1	1	92	101	17.0000
.).))))))	chr2:62100036-62100316(-)$1	1	213	222	19.5000
)))))))))	chr11:18425235-18425451(+)$1	1	60	69	17.0000
))))))).)	chr17:36453084-36453371(+)$1	1	119	128	16.3750
)))))))))	chr11:18425214-18425435(+)$1	1	81	90	17.0000
(((((...)	chr3:49050497-49050788(+)$1	1	134	143	14.5000
))))).)))	chr13:98828467-98828734(+)$1	1	226	235	16.3750
....)))))	chr6:26285547-26285800(-)$1	1	99	108	19.5000

#PSSM
A : 0.50	G : 0.25	U : 0.25	
G : 1.00	
G : 0.62	A : 0.37	
U : 0.87	G : 0.12	
U : 1.00	
U : 1.00	
G : 0.50	A : 0.25	C : 0.12	U : 0.12	
G : 1.00	
G : 1.00	

#score	137.25
#seq	8
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_UTR_m2_run2.nuc.txt

#NT
UCA	chr1:91966694-91966948(+)$1	254	50	53	8.9999
UCA	chr20:10643002-10643271(-)$1	269	183	186	8.9999
UCA	chr3:187896549-187896803(+)$1	254	141	144	8.9999
UCA	chr11:6504152-6504406(+)$1	254	62	65	8.9999
UCA	chr11:116739740-116739980(-)$1	240	150	153	8.9999
UCA	chr11:6505586-6505882(+)$1	296	70	73	8.9999
uca	chr10:71922624-71922874(-)$1	250	22	25	8.9999
UCA	chr3:187897285-187897550(+)$1	265	45	48	8.9999
UCA	chr2:74090070-74090309(+)$1	239	73	76	8.9999
UCA	chr3:187897475-187897752(+)$1	277	43	46	8.9999
uca	chrX:77382790-77383050(+)$1	260	20	23	8.9999
UCA	chr11:116739512-116739781(-)$1	269	79	82	8.9999
UCA	chr5:167980552-167980797(-)$1	245	126	129	8.9999
uca	chr11:9192657-9192914(-)$1	257	3	6	8.9999
uca	chr15:49517295-49517548(+)$1	253	30	33	8.9999
UCA	chr12:95651917-95652162(+)$1	245	7	10	8.9999
uca	chr2:138725047-138725306(+)$1	259	125	128	8.9999
UCA	chr11:12962560-12962805(+)$1	245	109	112	8.9999
UCA	chrX:47056923-47057174(+)$1	251	64	67	8.9999
UCA	chr2:85547144-85547411(-)$1	267	44	47	8.9999
uca	chr2:240251-240553(-)$1	302	56	59	8.9999
UCA	chr17:66509024-66509284(+)$1	260	3	6	8.9999
UCA	chr16:70191623-70191868(+)$1	245	44	47	8.9999
UCA	chr20:36146713-36146951(-)$1	238	14	17	8.9999
UCA	chr2:85547739-85548015(-)$1	276	8	11	8.9999
UCA	chr2:74093032-74093297(+)$1	265	15	18	8.9999
UCA	chr14:71195134-71195409(-)$1	275	25	28	8.9999
uca	chr2:71213900-71214150(-)$1	250	41	44	8.9999
UCA	chr11:118320990-118321260(+)$1	270	18	21	8.9999
uca	chr4:1385480-1385730(+)$1	250	18	21	8.9999
UCA	chr2:85547835-85548095(-)$1	260	7	10	8.9999
UCA	chr11:6505682-6505981(+)$1	299	184	187	8.9999
UCA	chr12:53805695-53805987(+)$1	292	13	16	8.9999
UCA	chr17:55173073-55173339(+)$1	266	58	61	8.9999
UCA	chr17:62118737-62119059(-)$1	322	54	57	8.9999
UCA	chr2:85546723-85546979(-)$1	256	47	50	8.9999
uca	chr2:71213567-71213820(-)$1	253	57	60	8.9999
UCA	chr17:62119041-62119288(-)$1	247	33	36	8.9999
UCA	chr11:12960926-12961211(+)$1	285	48	51	8.9999
uca	chr2:75883807-75884048(+)$1	241	19	22	8.9999
UCA	chr2:97402831-97403074(-)$1	243	25	28	8.9999
UCA	chr2:85548309-85548537(-)$1	228	13	16	8.9999
uca	chr11:9193462-9193703(-)$1	241	124	127	8.9999
uca	chr2:74090889-74091138(+)$1	249	102	105	8.9999
uca	chr2:71213452-71213749(-)$1	297	55	58	8.9999
uca	chr4:1386719-1386971(+)$1	252	32	35	8.9999
UCA	chr6:43457184-43457481(+)$1	297	3	6	8.9999
uca	chr16:57815893-57816197(-)$1	304	8	11	8.9999
UCA	chr3:187896807-187897072(+)$1	265	154	157	8.9999
uca	chr10:124147010-124147315(+)$1	305	85	88	8.9999
UCA	chr11:12959826-12960074(+)$1	248	16	19	8.9999
UCA	chr17:62117317-62117558(-)$1	241	70	73	8.9999
UCA	chr6:155585202-155585472(-)$1	270	4	7	8.9999
UCA	chr5:167979532-167979789(-)$1	257	88	91	8.9999
uca	chr2:240066-240362(-)$1	296	130	133	8.9999
uca	chr15:93564963-93565207(+)$1	244	65	68	8.9999
uca	chr3:185442178-185442398(-)$1	220	46	49	8.9999
UCA	chr2:85547111-85547337(-)$1	226	8	11	8.9999
UCA	chr6:160166057-160166296(+)$1	239	4	7	8.9999
UCA	chr17:62118662-62118932(-)$1	270	41	44	8.9999
UCA	chr2:71214752-71215037(-)$1	285	48	51	8.9999
uca	chr2:239981-240249(-)$1	268	17	20	8.9999
UCA	chr11:118321290-118321599(+)$1	309	83	86	8.9999
UCA	chr2:85547685-85547915(-)$1	230	54	57	8.9999
UCA	chr3:187898030-187898292(+)$1	262	15	18	8.9999
UCA	chr19:45911588-45911841(-)$1	253	41	44	8.9999
uca	chr4:106159671-106159950(+)$1	279	14	17	8.9999
uca	chr13:50067723-50068020(+)$1	297	172	175	8.9999
uca	chr4:1386518-1386801(+)$1	283	60	63	8.9999
UCA	chr2:85546844-85547085(-)$1	241	11	14	8.9999
UCA	chr7:141359984-141360341(-)$1	357	13	16	8.9999
UCA	chr16:23584978-23585273(+)$1	295	47	50	8.9999
UCA	chr2:74093561-74093810(+)$1	249	7	10	8.9999
uca	chr3:187896407-187896661(+)$1	254	12	15	8.9999
uca	chr4:1387455-1387690(+)$1	235	4	7	8.9999
UCA	chr2:85547715-85547939(-)$1	224	78	81	8.9999
UCA	chr22:20067968-20068250(+)$1	282	227	230	8.9999
UCA	chr1:91967074-91967358(+)$1	284	130	133	8.9999
UCA	chr19:45912055-45912311(-)$1	256	22	25	8.9999
UCA	chr16:70193756-70194026(+)$1	270	6	9	8.9999
UCA	chr11:116740644-116740886(-)$1	242	22	25	8.9999
uca	chr10:124146840-124147081(+)$1	241	22	25	8.9999
uca	chr2:32991435-32991698(+)$1	263	79	82	8.9999
UCA	chr12:66250216-66250494(+)$1	278	56	59	8.9999
UCA	chr2:136743223-136743497(+)$1	274	180	183	8.9999
UCA	chr17:76818866-76819104(-)$1	238	182	185	8.9999
uca	chr2:169721742-169722047(-)$1	305	16	19	8.9999
UCA	chr11:8637689-8637945(-)$1	256	29	32	8.9999
uca	chr10:71922583-71922824(-)$1	241	6	9	8.9999
UCA	chr5:167979460-167979732(-)$1	272	31	34	8.9999
uca	chr2:71213667-71213873(-)$1	206	34	37	8.9999
UCA	chr1:120262439-120262713(+)$1	274	27	30	8.9999
uca	chr11:12962298-12962580(+)$1	282	4	7	8.9999
UCA	chr12:57451282-57451539(-)$1	257	82	85	8.9999
uca	chr2:241318-241568(-)$1	250	5	8	8.9999
UCA	chr2:85548342-85548574(-)$1	232	50	53	8.9999
UCA	chr18:46855852-46856253(-)$1	401	14	17	8.9999
uca	chr2:75884291-75884533(+)$1	242	161	164	8.9999

#otherMatches

#Struct PSSM
:::	chr3:187896255-187896542(+)$1	287	3	6	8.9999
:::	chr1:91966694-91966948(+)$1	254	50	53	8.9999
FFF	chr20:10643002-10643271(-)$1	269	183	186	8.9999
e]e	chr3:187896549-187896803(+)$1	254	141	144	8.9999
ggg	chr11:6504152-6504406(+)$1	254	62	65	8.9999
ee:	chr11:116739740-116739980(-)$1	240	150	153	8.9999
'''	chr11:6505586-6505882(+)$1	296	70	73	8.9999
DD{	chr10:71922624-71922874(-)$1	250	22	25	8.9999
HHH	chr3:187897285-187897550(+)$1	265	45	48	8.9999
^^^	chr2:74090070-74090309(+)$1	239	73	76	8.9999
ddd	chr3:187897475-187897752(+)$1	277	43	46	8.9999
CC{	chrX:77382790-77383050(+)$1	260	20	23	8.9999
:::	chr11:116739512-116739781(-)$1	269	79	82	8.9999
cc]	chr5:167980552-167980797(-)$1	245	126	129	8.9999
::F	chr11:9192657-9192914(-)$1	257	3	6	8.9999
CC:	chr15:49517295-49517548(+)$1	253	30	33	8.9999
:::	chr12:95651917-95652162(+)$1	245	7	10	8.9999
===	chr2:138725047-138725306(+)$1	259	125	128	8.9999
ggg	chr11:12962560-12962805(+)$1	245	109	112	8.9999
ddd	chrX:47056923-47057174(+)$1	251	64	67	8.9999
iii	chr2:85547144-85547411(-)$1	267	44	47	8.9999
hhh	chr2:240251-240553(-)$1	302	56	59	8.9999
DDD	chr17:66509024-66509284(+)$1	260	3	6	8.9999
fff	chr16:70191623-70191868(+)$1	245	44	47	8.9999
{DD	chr20:36146713-36146951(-)$1	238	14	17	8.9999
:::	chr2:85547739-85548015(-)$1	276	8	11	8.9999
HHH	chr2:74093032-74093297(+)$1	265	15	18	8.9999
hhh	chr14:71195134-71195409(-)$1	275	25	28	8.9999
EEE	chr2:71213900-71214150(-)$1	250	41	44	8.9999
EEE	chr11:118320990-118321260(+)$1	270	18	21	8.9999
ppp	chr4:1385480-1385730(+)$1	250	18	21	8.9999
H::	chr2:85547835-85548095(-)$1	260	7	10	8.9999
}DD	chr11:6505682-6505981(+)$1	299	184	187	8.9999
DDD	chr12:53805695-53805987(+)$1	292	13	16	8.9999
fff	chr17:55173073-55173339(+)$1	266	58	61	8.9999
G::	chr17:62118737-62119059(-)$1	322	54	57	8.9999
II{	chr2:85546723-85546979(-)$1	256	47	50	8.9999
33i	chr2:71213567-71213820(-)$1	253	57	60	8.9999
NNE	chr17:62119041-62119288(-)$1	247	33	36	8.9999
rrr	chr11:12960926-12961211(+)$1	285	48	51	8.9999
fff	chr2:75883807-75884048(+)$1	241	19	22	8.9999
ddd	chr2:97402831-97403074(-)$1	243	25	28	8.9999
III	chr2:85548309-85548537(-)$1	228	13	16	8.9999
f]c	chr11:9193462-9193703(-)$1	241	124	127	8.9999
+++	chr2:74090889-74091138(+)$1	249	102	105	8.9999
{CC	chr2:71213452-71213749(-)$1	297	55	58	8.9999
HHH	chr4:1386719-1386971(+)$1	252	32	35	8.9999
:::	chr6:43457184-43457481(+)$1	297	3	6	8.9999
lll	chr16:57815893-57816197(-)$1	304	8	11	8.9999
mmd	chr3:187896807-187897072(+)$1	265	154	157	8.9999
uuu	chr10:124147010-124147315(+)$1	305	85	88	8.9999
KKF	chr11:12959826-12960074(+)$1	248	16	19	8.9999
:::	chr17:62117317-62117558(-)$1	241	70	73	8.9999
:::	chr6:155585202-155585472(-)$1	270	4	7	8.9999
[cc	chr5:167979532-167979789(-)$1	257	88	91	8.9999
bbb	chr2:240066-240362(-)$1	296	130	133	8.9999
d##	chr15:93564963-93565207(+)$1	244	65	68	8.9999
#ao	chr3:185442178-185442398(-)$1	220	46	49	8.9999
:::	chr2:85547111-85547337(-)$1	226	8	11	8.9999
ggg	chr6:160166057-160166296(+)$1	239	4	7	8.9999
:::	chr17:62118662-62118932(-)$1	270	41	44	8.9999
cc5	chr2:71214752-71215037(-)$1	285	48	51	8.9999
GGG	chr2:239981-240249(-)$1	268	17	20	8.9999
ee:	chr11:118321290-118321599(+)$1	309	83	86	8.9999
:::	chr2:85547685-85547915(-)$1	230	54	57	8.9999
vvv	chr3:187898030-187898292(+)$1	262	15	18	8.9999
MMM	chr19:45911588-45911841(-)$1	253	41	44	8.9999
:::	chr4:106159671-106159950(+)$1	279	14	17	8.9999
hhh	chr13:50067723-50068020(+)$1	297	172	175	8.9999
:ff	chr4:1386518-1386801(+)$1	283	60	63	8.9999
::d	chr2:85546844-85547085(-)$1	241	11	14	8.9999
===	chr7:141359984-141360341(-)$1	357	13	16	8.9999
{CC	chr16:23584978-23585273(+)$1	295	47	50	8.9999
:::	chr2:74093561-74093810(+)$1	249	7	10	8.9999
GGG	chr3:187896407-187896661(+)$1	254	12	15	8.9999
:::	chr4:1387455-1387690(+)$1	235	4	7	8.9999
:::	chr2:85547715-85547939(-)$1	224	78	81	8.9999
mmm	chr22:20067968-20068250(+)$1	282	227	230	8.9999
:ee	chr1:91967074-91967358(+)$1	284	130	133	8.9999
nnn	chr19:45912055-45912311(-)$1	256	22	25	8.9999
:::	chr16:70193756-70194026(+)$1	270	6	9	8.9999
cc2	chr11:116740644-116740886(-)$1	242	22	25	8.9999
zzz	chr10:124146840-124147081(+)$1	241	22	25	8.9999
2a2	chr2:32991435-32991698(+)$1	263	79	82	8.9999
cc:	chr12:66250216-66250494(+)$1	278	56	59	8.9999
///	chr2:136743223-136743497(+)$1	274	180	183	8.9999
ccc	chr17:76818866-76819104(-)$1	238	182	185	8.9999
nnn	chr2:169721742-169722047(-)$1	305	16	19	8.9999
LLL	chr11:8637689-8637945(-)$1	256	29	32	8.9999
D{E	chr10:71922583-71922824(-)$1	241	6	9	8.9999
eee	chr5:167979460-167979732(-)$1	272	31	34	8.9999
eee	chr2:71213667-71213873(-)$1	206	34	37	8.9999
GGG	chr1:120262439-120262713(+)$1	274	27	30	8.9999
:::	chr11:12962298-12962580(+)$1	282	4	7	8.9999
22f	chr12:57451282-57451539(-)$1	257	82	85	8.9999
eee	chr2:241318-241568(-)$1	250	5	8	8.9999
e""	chr2:85548342-85548574(-)$1	232	50	53	8.9999
FF{	chr18:46855852-46856253(-)$1	401	14	17	8.9999
[ee	chr2:75884291-75884533(+)$1	242	161	164	8.9999

#DB
...	chr3:187896255-187896542(+)$1	1	3	6	8.9999
...	chr1:91966694-91966948(+)$1	1	50	53	8.9999
)))	chr20:10643002-10643271(-)$1	1	183	186	8.9999
).)	chr3:187896549-187896803(+)$1	1	141	144	8.9999
)))	chr11:6504152-6504406(+)$1	1	62	65	8.9999
)).	chr11:116739740-116739980(-)$1	1	150	153	8.9999
...	chr11:6505586-6505882(+)$1	1	70	73	8.9999
((.	chr10:71922624-71922874(-)$1	1	22	25	8.9999
(((	chr3:187897285-187897550(+)$1	1	45	48	8.9999
...	chr2:74090070-74090309(+)$1	1	73	76	8.9999
(((	chr3:187897475-187897752(+)$1	1	43	46	8.9999
((.	chrX:77382790-77383050(+)$1	1	20	23	8.9999
...	chr11:116739512-116739781(-)$1	1	79	82	8.9999
)).	chr5:167980552-167980797(-)$1	1	126	129	8.9999
..(	chr11:9192657-9192914(-)$1	1	3	6	8.9999
((.	chr15:49517295-49517548(+)$1	1	30	33	8.9999
...	chr12:95651917-95652162(+)$1	1	7	10	8.9999
)))	chr2:138725047-138725306(+)$1	1	125	128	8.9999
(((	chr11:12962560-12962805(+)$1	1	109	112	8.9999
)))	chrX:47056923-47057174(+)$1	1	64	67	8.9999
)))	chr2:85547144-85547411(-)$1	1	44	47	8.9999
(((	chr2:240251-240553(-)$1	1	56	59	8.9999
(((	chr17:66509024-66509284(+)$1	1	3	6	8.9999
)))	chr16:70191623-70191868(+)$1	1	44	47	8.9999
.((	chr20:36146713-36146951(-)$1	1	14	17	8.9999
...	chr2:85547739-85548015(-)$1	1	8	11	8.9999
(((	chr2:74093032-74093297(+)$1	1	15	18	8.9999
(((	chr14:71195134-71195409(-)$1	1	25	28	8.9999
(((	chr2:71213900-71214150(-)$1	1	41	44	8.9999
(((	chr11:118320990-118321260(+)$1	1	18	21	8.9999
...	chr4:1385480-1385730(+)$1	1	18	21	8.9999
(..	chr2:85547835-85548095(-)$1	1	7	10	8.9999
.))	chr11:6505682-6505981(+)$1	1	184	187	8.9999
(((	chr12:53805695-53805987(+)$1	1	13	16	8.9999
)))	chr17:55173073-55173339(+)$1	1	58	61	8.9999
(..	chr17:62118737-62119059(-)$1	1	54	57	8.9999
((.	chr2:85546723-85546979(-)$1	1	47	50	8.9999
..)	chr2:71213567-71213820(-)$1	1	57	60	8.9999
..(	chr17:62119041-62119288(-)$1	1	33	36	8.9999
...	chr11:12960926-12961211(+)$1	1	48	51	8.9999
(((	chr2:75883807-75884048(+)$1	1	19	22	8.9999
(((	chr2:97402831-97403074(-)$1	1	25	28	8.9999
(((	chr2:85548309-85548537(-)$1	1	13	16	8.9999
).)	chr11:9193462-9193703(-)$1	1	124	127	8.9999
...	chr2:74090889-74091138(+)$1	1	102	105	8.9999
.((	chr2:71213452-71213749(-)$1	1	55	58	8.9999
(((	chr4:1386719-1386971(+)$1	1	32	35	8.9999
...	chr6:43457184-43457481(+)$1	1	3	6	8.9999
...	chr16:57815893-57816197(-)$1	1	8	11	8.9999
..)	chr3:187896807-187897072(+)$1	1	154	157	8.9999
...	chr10:124147010-124147315(+)$1	1	85	88	8.9999
..(	chr11:12959826-12960074(+)$1	1	16	19	8.9999
...	chr17:62117317-62117558(-)$1	1	70	73	8.9999
...	chr6:155585202-155585472(-)$1	1	4	7	8.9999
.((	chr5:167979532-167979789(-)$1	1	88	91	8.9999
(((	chr2:240066-240362(-)$1	1	130	133	8.9999
(..	chr15:93564963-93565207(+)$1	1	65	68	8.9999
.(.	chr3:185442178-185442398(-)$1	1	46	49	8.9999
...	chr2:85547111-85547337(-)$1	1	8	11	8.9999
(((	chr6:160166057-160166296(+)$1	1	4	7	8.9999
...	chr17:62118662-62118932(-)$1	1	41	44	8.9999
)).	chr2:71214752-71215037(-)$1	1	48	51	8.9999
(((	chr2:239981-240249(-)$1	1	17	20	8.9999
)).	chr11:118321290-118321599(+)$1	1	83	86	8.9999
...	chr2:85547685-85547915(-)$1	1	54	57	8.9999
...	chr3:187898030-187898292(+)$1	1	15	18	8.9999
...	chr19:45911588-45911841(-)$1	1	41	44	8.9999
...	chr4:106159671-106159950(+)$1	1	14	17	8.9999
(((	chr13:50067723-50068020(+)$1	1	172	175	8.9999
.((	chr4:1386518-1386801(+)$1	1	60	63	8.9999
..(	chr2:85546844-85547085(-)$1	1	11	14	8.9999
(((	chr7:141359984-141360341(-)$1	1	13	16	8.9999
.((	chr16:23584978-23585273(+)$1	1	47	50	8.9999
...	chr2:74093561-74093810(+)$1	1	7	10	8.9999
(((	chr3:187896407-187896661(+)$1	1	12	15	8.9999
...	chr4:1387455-1387690(+)$1	1	4	7	8.9999
...	chr2:85547715-85547939(-)$1	1	78	81	8.9999
...	chr22:20067968-20068250(+)$1	1	227	230	8.9999
.((	chr1:91967074-91967358(+)$1	1	130	133	8.9999
...	chr19:45912055-45912311(-)$1	1	22	25	8.9999
...	chr16:70193756-70194026(+)$1	1	6	9	8.9999
)).	chr11:116740644-116740886(-)$1	1	22	25	8.9999
...	chr10:124146840-124147081(+)$1	1	22	25	8.9999
.).	chr2:32991435-32991698(+)$1	1	79	82	8.9999
)).	chr12:66250216-66250494(+)$1	1	56	59	8.9999
...	chr2:136743223-136743497(+)$1	1	180	183	8.9999
(((	chr17:76818866-76819104(-)$1	1	182	185	8.9999
...	chr2:169721742-169722047(-)$1	1	16	19	8.9999
...	chr11:8637689-8637945(-)$1	1	29	32	8.9999
(.(	chr10:71922583-71922824(-)$1	1	6	9	8.9999
)))	chr5:167979460-167979732(-)$1	1	31	34	8.9999
(((	chr2:71213667-71213873(-)$1	1	34	37	8.9999
(((	chr1:120262439-120262713(+)$1	1	27	30	8.9999
...	chr11:12962298-12962580(+)$1	1	4	7	8.9999
..)	chr12:57451282-57451539(-)$1	1	82	85	8.9999
(((	chr2:241318-241568(-)$1	1	5	8	8.9999
(..	chr2:85548342-85548574(-)$1	1	50	53	8.9999
((.	chr18:46855852-46856253(-)$1	1	14	17	8.9999
.((	chr2:75884291-75884533(+)$1	1	161	164	8.9999

#PSSM
U : 0.66	u : 0.33	
C : 0.66	c : 0.33	
A : 0.66	a : 0.33	

#score	890.9999999999999
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_UTR_m2_run1.nuc.txt

#NT
GGA	chr12:56498355-56498640(+)$1	285	69	72	8.9999
GGA	chr6:32945977-32946268(+)$1	291	19	22	8.9999
GGA	chr3:122785876-122786221(+)$1	345	8	11	8.9999
GGA	chr12:125398625-125398904(-)$1	279	44	47	8.9999
GGA	chr16:30999938-31000212(+)$1	274	37	40	8.9999
GGA	chr12:56122310-56122595(-)$1	285	62	65	8.9999
GGA	chr11:47186410-47186659(-)$1	249	53	56	8.9999
gga	chr3:184036869-184037125(+)$1	256	13	16	8.9999
GGA	chr8:124194937-124195185(+)$1	248	13	16	8.9999
GGA	chr18:56996000-56996209(-)$1	209	19	22	8.9999
GGA	chr3:33481526-33481771(-)$1	245	27	30	8.9999
GGA	chr11:5275551-5275802(-)$1	251	9	12	8.9999
GGA	chr6:30711051-30711363(-)$1	312	49	52	8.9999
GGA	chr7:66105849-66106114(+)$1	265	0	3	8.9999
GGA	chr20:60709633-60709903(+)$1	270	43	46	8.9999
GGA	chr9:74979418-74979663(-)$1	245	40	43	8.9999
GGA	chr9:139904710-139904981(-)$1	271	71	74	8.9999
gga	chr6:86299097-86299392(-)$1	295	25	28	8.9999
GGA	chr16:69775957-69776219(-)$1	262	9	12	8.9999
GGA	chr19:50363663-50363905(+)$1	242	20	23	8.9999
GGA	chr15:74702092-74702359(-)$1	267	79	82	8.9999
GGA	chr1:6245461-6245687(-)$1	226	96	99	8.9999
gga	chr6:34664385-34664665(-)$1	280	26	29	8.9999
GGA	chr19:35646174-35646429(+)$1	255	0	3	8.9999
GGA	chr5:176737580-176737855(-)$1	275	6	9	8.9999
GGA	chr1:228336383-228336642(+)$1	259	1	4	8.9999
GGA	chr19:572520-572802(+)$1	282	82	85	8.9999
GGA	chr1:117910487-117910757(+)$1	270	40	43	8.9999
GGA	chr9:139729816-139730072(+)$1	256	9	12	8.9999
GGA	chr11:75115067-75115283(+)$1	216	26	29	8.9999
GGA	chr11:124506293-124506539(+)$1	246	9	12	8.9999
GGA	chr4:39329076-39329319(-)$1	243	20	23	8.9999
gga	chr10:103874439-103874671(-)$1	232	167	170	8.9999
GGA	chr1:52882283-52882532(+)$1	249	62	65	8.9999
GGA	chr11:62400420-62400652(-)$1	232	98	101	8.9999
GGA	chr10:101379905-101380194(-)$1	289	23	26	8.9999
GGA	chr16:8948715-8948975(-)$1	260	3	6	8.9999
GGA	chr1:19401030-19401274(-)$1	244	38	41	8.9999
GGA	chr6:44081132-44081397(-)$1	265	71	74	8.9999
GGA	chr1:1560283-1560561(+)$1	278	4	7	8.9999
GGA	chr11:93463882-93464110(-)$1	228	157	160	8.9999
GGA	chr22:38902143-38902403(-)$1	260	2	5	8.9999
GGA	chr2:48025680-48025944(+)$1	264	128	131	8.9999
GGA	chrX:153609619-153609846(+)$1	227	111	114	8.9999
GGA	chr1:19444236-19444493(-)$1	257	107	110	8.9999
GGA	chr12:49666495-49666738(+)$1	243	196	199	8.9999
GGA	chr17:79878338-79878589(-)$1	251	11	14	8.9999
GGA	chr11:27494092-27494363(-)$1	271	20	23	8.9999
GGA	chr16:29677284-29677572(+)$1	288	67	70	8.9999
GGA	chr3:23959237-23959462(+)$1	225	26	29	8.9999
GGA	chr19:19021694-19021908(-)$1	214	29	32	8.9999
GGA	chr17:38286190-38286478(+)$1	288	77	80	8.9999
GGA	chr22:21307158-21307382(+)$1	224	25	28	8.9999
GGA	chr15:63914910-63915180(-)$1	270	89	92	8.9999
GGA	chr10:98984362-98984618(-)$1	256	23	26	8.9999
GGA	chr10:71930023-71930327(-)$1	304	33	36	8.9999
GGA	chr22:40805055-40805333(+)$1	278	43	46	8.9999
GGA	chr1:109234933-109235210(+)$1	277	22	25	8.9999
GGA	chrX:153237072-153237327(-)$1	255	79	82	8.9999
GGA	chr7:100171590-100171814(-)$1	224	99	102	8.9999
GGA	chr8:145691423-145691676(+)$1	253	12	15	8.9999
GGA	chr11:61557156-61557406(-)$1	250	98	101	8.9999
GGA	chr16:23701454-23701690(+)$1	236	184	187	8.9999
GGA	chr16:30081483-30081694(+)$1	211	52	55	8.9999
GGA	chr6:31797494-31797751(+)$1	257	19	22	8.9999
gga	chr11:75116242-75116450(+)$1	208	12	15	8.9999
GGA	chr22:21307182-21307411(+)$1	229	1	4	8.9999
GGA	chr11:85375878-85376113(-)$1	235	58	61	8.9999
Gga	chr17:79603860-79604129(-)$1	269	9	12	8.9999
GGA	chr17:73236642-73236922(-)$1	280	7	10	8.9999
GGA	chr5:177575002-177575315(+)$1	313	11	14	8.9999
GGA	chr1:183596534-183596802(-)$1	268	85	88	8.9999
GGA	chr11:33279175-33279506(+)$1	331	9	12	8.9999
GGA	chr16:1836671-1836932(+)$1	261	10	13	8.9999
GGA	chr17:76116537-76116821(-)$1	284	13	16	8.9999
GGA	chr12:98994927-98995159(+)$1	232	0	3	8.9999
GGA	chr8:1772076-1772450(+)$1	374	13	16	8.9999
GGA	chr12:49666689-49666938(+)$1	249	2	5	8.9999
GGA	chr6:76311783-76312086(+)$1	303	45	48	8.9999
GGA	chr1:27106041-27106263(+)$1	222	16	19	8.9999
GGA	chr11:289411-289663(+)$1	252	108	111	8.9999
GGA	chr19:48983004-48983259(+)$1	255	37	40	8.9999
GGA	chr10:135125934-135126223(+)$1	289	14	17	8.9999
GGA	chr1:149857118-149857356(-)$1	238	77	80	8.9999
GGA	chr16:88718430-88718690(-)$1	260	89	92	8.9999
GGA	chr3:195635555-195635812(-)$1	257	1	4	8.9999
GGA	chr22:22049865-22050118(+)$1	253	60	63	8.9999
GGA	chr11:57174598-57174863(-)$1	265	72	75	8.9999
GGA	chr12:6879226-6879485(+)$1	259	100	103	8.9999
gga	chr15:64752909-64753137(+)$1	228	0	3	8.9999
gga	chr1:36789253-36789533(+)$1	280	32	35	8.9999
gga	chr3:197611229-197611485(+)$1	256	67	70	8.9999
GGA	chr19:6740920-6741184(+)$1	264	18	21	8.9999
GGA	chr12:49666616-49666866(+)$1	250	75	78	8.9999
GGA	chr1:21069250-21069481(-)$1	231	109	112	8.9999

#otherMatches

#Struct PSSM
dd]	chr11:95503930-95504187(-)$1	257	58	61	8.9999
lll	chr12:56498355-56498640(+)$1	285	69	72	8.9999
{DD	chr6:32945977-32946268(+)$1	291	19	22	8.9999
A::	chr3:122785876-122786221(+)$1	345	8	11	8.9999
EE:	chr12:125398625-125398904(-)$1	279	44	47	8.9999
ddd	chr16:30999938-31000212(+)$1	274	37	40	8.9999
"am	chr12:56122310-56122595(-)$1	285	62	65	8.9999
EE{	chr11:47186410-47186659(-)$1	249	53	56	8.9999
:::	chr3:184036869-184037125(+)$1	256	13	16	8.9999
EEE	chr8:124194937-124195185(+)$1	248	13	16	8.9999
FFF	chr18:56996000-56996209(-)$1	209	19	22	8.9999
nnn	chr3:33481526-33481771(-)$1	245	27	30	8.9999
dd[	chr11:5275551-5275802(-)$1	251	9	12	8.9999
EEE	chr6:30711051-30711363(-)$1	312	49	52	8.9999
:EE	chr7:66105849-66106114(+)$1	265	0	3	8.9999
ee5	chr20:60709633-60709903(+)$1	270	43	46	8.9999
a!!	chr9:74979418-74979663(-)$1	245	40	43	8.9999
=rr	chr9:139904710-139904981(-)$1	271	71	74	8.9999
iii	chr6:86299097-86299392(-)$1	295	25	28	8.9999
EEK	chr16:69775957-69776219(-)$1	262	9	12	8.9999
:::	chr19:50363663-50363905(+)$1	242	20	23	8.9999
d::	chr15:74702092-74702359(-)$1	267	79	82	8.9999
EEE	chr1:6245461-6245687(-)$1	226	96	99	8.9999
:::	chr6:34664385-34664665(-)$1	280	26	29	8.9999
:cc	chr19:35646174-35646429(+)$1	255	0	3	8.9999
FFF	chr5:176737580-176737855(-)$1	275	6	9	8.9999
ddd	chr1:228336383-228336642(+)$1	259	1	4	8.9999
ggg	chr19:572520-572802(+)$1	282	82	85	8.9999
hh$	chr1:117910487-117910757(+)$1	270	40	43	8.9999
ooo	chr9:139729816-139730072(+)$1	256	9	12	8.9999
hh:	chr11:75115067-75115283(+)$1	216	26	29	8.9999
nnn	chr11:124506293-124506539(+)$1	246	9	12	8.9999
E::	chr4:39329076-39329319(-)$1	243	20	23	8.9999
:::	chr10:103874439-103874671(-)$1	232	167	170	8.9999
iii	chr1:52882283-52882532(+)$1	249	62	65	8.9999
hhF	chr11:62400420-62400652(-)$1	232	98	101	8.9999
"""	chr10:101379905-101380194(-)$1	289	23	26	8.9999
ggg	chr16:8948715-8948975(-)$1	260	3	6	8.9999
ee!	chr1:19401030-19401274(-)$1	244	38	41	8.9999
CCB	chr6:44081132-44081397(-)$1	265	71	74	8.9999
fff	chr1:1560283-1560561(+)$1	278	4	7	8.9999
iii	chr11:93463882-93464110(-)$1	228	157	160	8.9999
::d	chr22:38902143-38902403(-)$1	260	2	5	8.9999
eee	chr2:48025680-48025944(+)$1	264	128	131	8.9999
eee	chrX:153609619-153609846(+)$1	227	111	114	8.9999
:::	chr1:19444236-19444493(-)$1	257	107	110	8.9999
ddd	chr12:49666495-49666738(+)$1	243	196	199	8.9999
ccC	chr17:79878338-79878589(-)$1	251	11	14	8.9999
ell	chr11:27494092-27494363(-)$1	271	20	23	8.9999
'''	chr16:29677284-29677572(+)$1	288	67	70	8.9999
h::	chr3:23959237-23959462(+)$1	225	26	29	8.9999
eee	chr19:19021694-19021908(-)$1	214	29	32	8.9999
c]e	chr17:38286190-38286478(+)$1	288	77	80	8.9999
bb3	chr22:21307158-21307382(+)$1	224	25	28	8.9999
bb)	chr15:63914910-63915180(-)$1	270	89	92	8.9999
fff	chr10:98984362-98984618(-)$1	256	23	26	8.9999
een	chr10:71930023-71930327(-)$1	304	33	36	8.9999
cmm	chr22:40805055-40805333(+)$1	278	43	46	8.9999
III	chr1:109234933-109235210(+)$1	277	22	25	8.9999
ddd	chrX:153237072-153237327(-)$1	255	79	82	8.9999
(((	chr7:100171590-100171814(-)$1	224	99	102	8.9999
DD{	chr8:145691423-145691676(+)$1	253	12	15	8.9999
ddd	chr11:61557156-61557406(-)$1	250	98	101	8.9999
ddd	chr16:23701454-23701690(+)$1	236	184	187	8.9999
eee	chr16:30081483-30081694(+)$1	211	52	55	8.9999
::J	chr6:31797494-31797751(+)$1	257	19	22	8.9999
hh%	chr11:75116242-75116450(+)$1	208	12	15	8.9999
cc!	chr22:21307182-21307411(+)$1	229	1	4	8.9999
fff	chr11:85375878-85376113(-)$1	235	58	61	8.9999
bb[	chr17:79603860-79604129(-)$1	269	9	12	8.9999
bb:	chr17:73236642-73236922(-)$1	280	7	10	8.9999
ddG	chr5:177575002-177575315(+)$1	313	11	14	8.9999
[dd	chr1:183596534-183596802(-)$1	268	85	88	8.9999
HHH	chr11:33279175-33279506(+)$1	331	9	12	8.9999
C{E	chr16:1836671-1836932(+)$1	261	10	13	8.9999
===	chr17:76116537-76116821(-)$1	284	13	16	8.9999
a""	chr12:98994927-98995159(+)$1	232	0	3	8.9999
HHH	chr8:1772076-1772450(+)$1	374	13	16	8.9999
DD:	chr12:49666689-49666938(+)$1	249	2	5	8.9999
ccc	chr6:76311783-76312086(+)$1	303	45	48	8.9999
b!!	chr1:27106041-27106263(+)$1	222	16	19	8.9999
fff	chr11:289411-289663(+)$1	252	108	111	8.9999
FFF	chr19:48983004-48983259(+)$1	255	37	40	8.9999
EEE	chr10:135125934-135126223(+)$1	289	14	17	8.9999
e##	chr1:149857118-149857356(-)$1	238	77	80	8.9999
CCK	chr16:88718430-88718690(-)$1	260	89	92	8.9999
:::	chr3:195635555-195635812(-)$1	257	1	4	8.9999
D{B	chr22:22049865-22050118(+)$1	253	60	63	8.9999
JJJ	chr11:57174598-57174863(-)$1	265	72	75	8.9999
dd]	chr12:6879226-6879485(+)$1	259	100	103	8.9999
ggg	chr15:64752909-64753137(+)$1	228	0	3	8.9999
GGG	chr1:36789253-36789533(+)$1	280	32	35	8.9999
eee	chr3:197611229-197611485(+)$1	256	67	70	8.9999
GG{	chr19:6740920-6741184(+)$1	264	18	21	8.9999
ddd	chr12:49666616-49666866(+)$1	250	75	78	8.9999
bb[	chr1:21069250-21069481(-)$1	231	109	112	8.9999

#DB
)).	chr11:95503930-95504187(-)$1	1	58	61	8.9999
...	chr12:56498355-56498640(+)$1	1	69	72	8.9999
.((	chr6:32945977-32946268(+)$1	1	19	22	8.9999
(..	chr3:122785876-122786221(+)$1	1	8	11	8.9999
((.	chr12:125398625-125398904(-)$1	1	44	47	8.9999
)))	chr16:30999938-31000212(+)$1	1	37	40	8.9999
.(.	chr12:56122310-56122595(-)$1	1	62	65	8.9999
((.	chr11:47186410-47186659(-)$1	1	53	56	8.9999
...	chr3:184036869-184037125(+)$1	1	13	16	8.9999
(((	chr8:124194937-124195185(+)$1	1	13	16	8.9999
(((	chr18:56996000-56996209(-)$1	1	19	22	8.9999
...	chr3:33481526-33481771(-)$1	1	27	30	8.9999
((.	chr11:5275551-5275802(-)$1	1	9	12	8.9999
(((	chr6:30711051-30711363(-)$1	1	49	52	8.9999
.((	chr7:66105849-66106114(+)$1	1	0	3	8.9999
)).	chr20:60709633-60709903(+)$1	1	43	46	8.9999
(..	chr9:74979418-74979663(-)$1	1	40	43	8.9999
(..	chr9:139904710-139904981(-)$1	1	71	74	8.9999
)))	chr6:86299097-86299392(-)$1	1	25	28	8.9999
((.	chr16:69775957-69776219(-)$1	1	9	12	8.9999
...	chr19:50363663-50363905(+)$1	1	20	23	8.9999
)..	chr15:74702092-74702359(-)$1	1	79	82	8.9999
(((	chr1:6245461-6245687(-)$1	1	96	99	8.9999
...	chr6:34664385-34664665(-)$1	1	26	29	8.9999
.((	chr19:35646174-35646429(+)$1	1	0	3	8.9999
(((	chr5:176737580-176737855(-)$1	1	6	9	8.9999
(((	chr1:228336383-228336642(+)$1	1	1	4	8.9999
)))	chr19:572520-572802(+)$1	1	82	85	8.9999
((.	chr1:117910487-117910757(+)$1	1	40	43	8.9999
...	chr9:139729816-139730072(+)$1	1	9	12	8.9999
)).	chr11:75115067-75115283(+)$1	1	26	29	8.9999
...	chr11:124506293-124506539(+)$1	1	9	12	8.9999
(..	chr4:39329076-39329319(-)$1	1	20	23	8.9999
...	chr10:103874439-103874671(-)$1	1	167	170	8.9999
(((	chr1:52882283-52882532(+)$1	1	62	65	8.9999
))(	chr11:62400420-62400652(-)$1	1	98	101	8.9999
...	chr10:101379905-101380194(-)$1	1	23	26	8.9999
(((	chr16:8948715-8948975(-)$1	1	3	6	8.9999
((.	chr1:19401030-19401274(-)$1	1	38	41	8.9999
(((	chr6:44081132-44081397(-)$1	1	71	74	8.9999
(((	chr1:1560283-1560561(+)$1	1	4	7	8.9999
(((	chr11:93463882-93464110(-)$1	1	157	160	8.9999
..(	chr22:38902143-38902403(-)$1	1	2	5	8.9999
)))	chr2:48025680-48025944(+)$1	1	128	131	8.9999
(((	chrX:153609619-153609846(+)$1	1	111	114	8.9999
...	chr1:19444236-19444493(-)$1	1	107	110	8.9999
)))	chr12:49666495-49666738(+)$1	1	196	199	8.9999
))(	chr17:79878338-79878589(-)$1	1	11	14	8.9999
(..	chr11:27494092-27494363(-)$1	1	20	23	8.9999
...	chr16:29677284-29677572(+)$1	1	67	70	8.9999
)..	chr3:23959237-23959462(+)$1	1	26	29	8.9999
(((	chr19:19021694-19021908(-)$1	1	29	32	8.9999
).)	chr17:38286190-38286478(+)$1	1	77	80	8.9999
)).	chr22:21307158-21307382(+)$1	1	25	28	8.9999
((.	chr15:63914910-63915180(-)$1	1	89	92	8.9999
)))	chr10:98984362-98984618(-)$1	1	23	26	8.9999
((.	chr10:71930023-71930327(-)$1	1	33	36	8.9999
(..	chr22:40805055-40805333(+)$1	1	43	46	8.9999
(((	chr1:109234933-109235210(+)$1	1	22	25	8.9999
)))	chrX:153237072-153237327(-)$1	1	79	82	8.9999
...	chr7:100171590-100171814(-)$1	1	99	102	8.9999
((.	chr8:145691423-145691676(+)$1	1	12	15	8.9999
(((	chr11:61557156-61557406(-)$1	1	98	101	8.9999
(((	chr16:23701454-23701690(+)$1	1	184	187	8.9999
(((	chr16:30081483-30081694(+)$1	1	52	55	8.9999
..(	chr6:31797494-31797751(+)$1	1	19	22	8.9999
((.	chr11:75116242-75116450(+)$1	1	12	15	8.9999
((.	chr22:21307182-21307411(+)$1	1	1	4	8.9999
(((	chr11:85375878-85376113(-)$1	1	58	61	8.9999
((.	chr17:79603860-79604129(-)$1	1	9	12	8.9999
)).	chr17:73236642-73236922(-)$1	1	7	10	8.9999
))(	chr5:177575002-177575315(+)$1	1	11	14	8.9999
.((	chr1:183596534-183596802(-)$1	1	85	88	8.9999
(((	chr11:33279175-33279506(+)$1	1	9	12	8.9999
(.(	chr16:1836671-1836932(+)$1	1	10	13	8.9999
(((	chr17:76116537-76116821(-)$1	1	13	16	8.9999
(..	chr12:98994927-98995159(+)$1	1	0	3	8.9999
(((	chr8:1772076-1772450(+)$1	1	13	16	8.9999
((.	chr12:49666689-49666938(+)$1	1	2	5	8.9999
(((	chr6:76311783-76312086(+)$1	1	45	48	8.9999
(..	chr1:27106041-27106263(+)$1	1	16	19	8.9999
(((	chr11:289411-289663(+)$1	1	108	111	8.9999
(((	chr19:48983004-48983259(+)$1	1	37	40	8.9999
(((	chr10:135125934-135126223(+)$1	1	14	17	8.9999
(..	chr1:149857118-149857356(-)$1	1	77	80	8.9999
((.	chr16:88718430-88718690(-)$1	1	89	92	8.9999
...	chr3:195635555-195635812(-)$1	1	1	4	8.9999
(.(	chr22:22049865-22050118(+)$1	1	60	63	8.9999
(((	chr11:57174598-57174863(-)$1	1	72	75	8.9999
)).	chr12:6879226-6879485(+)$1	1	100	103	8.9999
(((	chr15:64752909-64753137(+)$1	1	0	3	8.9999
(((	chr1:36789253-36789533(+)$1	1	32	35	8.9999
)))	chr3:197611229-197611485(+)$1	1	67	70	8.9999
((.	chr19:6740920-6741184(+)$1	1	18	21	8.9999
)))	chr12:49666616-49666866(+)$1	1	75	78	8.9999
((.	chr1:21069250-21069481(-)$1	1	109	112	8.9999

#PSSM
G : 0.91	g : 0.08	
G : 0.90	g : 0.09	
A : 0.90	a : 0.09	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_CDS_m1_run2.nuc.txt

#NT
GGGGCAG	chr2:96967243-96967488(-)$1	245	52	59	13.8448
UGGACAG	chr1:160267032-160267242(-)$1	210	102	109	12.3793
UGGCCAG	chrX:39931950-39932220(-)$1	270	114	121	12.2068
GGGGCAG	chr3:184045566-184045814(+)$1	248	161	168	13.8448
UGGGCUG	chr1:241803257-241803531(-)$1	274	127	134	12.9827
UUGGCAG	chr9:133748217-133748466(+)$1	249	22	29	11.6896
UGGGCAG	chr6:90529196-90529522(-)$1	326	275	282	16.5172
UGCGCAG	chr19:50918060-50918310(+)$1	250	117	124	12.8103
UGGGCUG	chr9:35711558-35711807(-)$1	249	77	84	12.9827
UGGGCUG	chr9:35712873-35713137(-)$1	264	122	129	12.9827
UGCGCAG	chr15:35261644-35261948(-)$1	304	145	152	12.8103
GGGGCAG	chr10:120801962-120802213(-)$1	251	122	129	13.8448
UGGGCUG	chr3:184038969-184039219(+)$1	250	23	30	12.9827
UGGGCGG	chr8:48744317-48744547(-)$1	230	20	27	12.6379
UGGGCAG	chr9:139734867-139735142(+)$1	275	114	121	16.5172
GGGGCAG	chr1:226567578-226567834(-)$1	256	112	119	13.8448
UGGGCGG	chr5:149755887-149756183(+)$1	296	23	30	12.6379
UGGCCAG	chr1:19480221-19480501(-)$1	280	46	53	12.2068
UGGGCUG	chr17:40120369-40120722(+)$1	353	249	256	12.9827
UGGGGAG	chr2:230695371-230695656(-)$1	285	141	148	12.4655
UGCGCAG	chr22:21800359-21800600(+)$1	241	51	58	12.8103
GGGGCAG	chr16:70301598-70301800(-)$1	202	30	37	13.8448
UGGGGAG	chr3:48646498-48646783(-)$1	285	207	214	12.4655
UGAGCAG	chr5:10256031-10256295(+)$1	264	114	121	12.9827
CGGGCAG	chr11:71724060-71724308(-)$1	248	38	45	13.4137
UGGGGAG	chr14:102507952-102508163(+)$1	211	55	62	12.4655
CGGGCAG	chr6:31749165-31749401(-)$1	236	121	128	13.4137
UGGGGAG	chrX:153219912-153220142(-)$1	230	39	46	12.4655
UGUGCAG	chr2:54884906-54885177(+)$1	271	73	80	12.5517
UGGGCAC	chr19:50905366-50905632(+)$1	266	212	219	11.6896
GGGGCAG	chr2:54856566-54856861(+)$1	295	166	173	13.8448
AGGGCAG	chr22:22893248-22893511(-)$1	263	68	75	13.1551
UGGGCAG	chr12:120582085-120582328(-)$1	243	228	235	16.5172
UGAGCAG	chr19:17838140-17838442(+)$1	302	158	165	12.9827
CGGGCAG	chr19:10260118-10260378(-)$1	260	75	82	13.4137
UGAGCAG	chr2:96957463-96957730(-)$1	267	229	236	12.9827
GGGGCAG	chr16:70301605-70301812(-)$1	207	42	49	13.8448
UGGGCUG	chr5:154190974-154191213(+)$1	239	108	115	12.9827
UGGGGAG	chr3:184040868-184041079(+)$1	211	139	146	12.4655
UGCGCAG	chr17:80022685-80023003(-)$1	318	306	313	12.8103
UGGGCUG	chr11:62364981-62365193(-)$1	212	137	144	12.9827
GGGGCAG	chr1:226567552-226567778(-)$1	226	56	63	13.8448
GGGGCAG	chr22:42032454-42032717(+)$1	263	99	106	13.8448
UGGACAG	chrX:39923604-39923907(-)$1	303	211	218	12.3793
UGAGCAG	chr14:102471353-102471589(+)$1	236	83	90	12.9827
GGGGCAG	chr9:131750226-131750464(+)$1	238	103	110	13.8448
CGGGCAG	chr17:1580189-1580399(-)$1	210	4	11	13.4137
UGGGUAG	chr2:15701253-15701534(-)$1	281	272	279	12.1206
UGAGCAG	chr11:71726473-71726758(-)$1	285	255	262	12.9827
UGGGCGG	chr3:184026395-184026635(+)$1	240	43	50	12.6379
UGGACAG	chr7:2403923-2404173(+)$1	250	86	93	12.3793
UGGGCAG	chr3:184025301-184025545(+)$1	244	3	10	16.5172
UGGGCAG	chr22:23523526-23523777(+)$1	251	228	235	16.5172
CGGGCAG	chr9:139369612-139369876(-)$1	264	106	113	13.4137
UGAGCAG	chr1:19479752-19480004(-)$1	252	46	53	12.9827
UGGACAG	chr19:10793254-10793481(+)$1	227	159	166	12.3793
UGGGCAG	chr22:30740908-30741179(-)$1	271	263	270	16.5172

#otherMatches

#Struct PSSM
FFFCCCd	chr17:80042100-80042322(-)$1	222	24	31	13.1551
"""ffff	chr2:96967243-96967488(-)$1	245	52	59	13.8448
'''''''	chr1:160267032-160267242(-)$1	210	102	109	12.3793
ccc"""c	chrX:39931950-39932220(-)$1	270	114	121	12.2068
=======	chr3:184045566-184045814(+)$1	248	161	168	13.8448
5dddd]b	chr1:241803257-241803531(-)$1	274	127	134	12.9827
nnddddd	chr9:133748217-133748466(+)$1	249	22	29	11.6896
DDDDYYC	chr6:90529196-90529522(-)$1	326	275	282	16.5172
4a]eeee	chr19:50918060-50918310(+)$1	250	117	124	12.8103
cceeeee	chr9:35711558-35711807(-)$1	249	77	84	12.9827
=======	chr9:35712873-35713137(-)$1	264	122	129	12.9827
4a]gggg	chr15:35261644-35261948(-)$1	304	145	152	12.8103
eeee+++	chr10:120801962-120802213(-)$1	251	122	129	13.8448
IIIIIII	chr3:184038969-184039219(+)$1	250	23	30	12.9827
EEELLLC	chr8:48744317-48744547(-)$1	230	20	27	12.6379
B}FFFFF	chr9:139734867-139735142(+)$1	275	114	121	16.5172
gg[dddd	chr1:226567578-226567834(-)$1	256	112	119	13.8448
:ffffff	chr5:149755887-149756183(+)$1	296	23	30	12.6379
e[dddd"	chr1:19480221-19480501(-)$1	280	46	53	12.2068
HHHHHHH	chr17:40120369-40120722(+)$1	353	249	256	12.9827
9hhhhhh	chr2:230695371-230695656(-)$1	285	141	148	12.4655
GGGGGGD	chr22:21800359-21800600(+)$1	241	51	58	12.8103
eeeee!!	chr16:70301598-70301800(-)$1	202	30	37	13.8448
:gggggg	chr3:48646498-48646783(-)$1	285	207	214	12.4655
hhhhhhl	chr5:10256031-10256295(+)$1	264	114	121	12.9827
A{BBQQQ	chr11:71724060-71724308(-)$1	248	38	45	13.4137
cccHHHH	chr14:102507952-102508163(+)$1	211	55	62	12.4655
:IIIIII	chr6:31749165-31749401(-)$1	236	121	128	13.4137
iiiieee	chrX:153219912-153220142(-)$1	230	39	46	12.4655
ccc5555	chr2:54884906-54885177(+)$1	271	73	80	12.5517
]ddddcc	chr19:50905366-50905632(+)$1	266	212	219	11.6896
eeebb]c	chr2:54856566-54856861(+)$1	295	166	173	13.8448
FFFdddd	chr22:22893248-22893511(-)$1	263	68	75	13.1551
HHHHHH}	chr12:120582085-120582328(-)$1	243	228	235	16.5172
@@@@@EE	chr19:17838140-17838442(+)$1	302	158	165	12.9827
:dddd[b	chr19:10260118-10260378(-)$1	260	75	82	13.4137
cc]dddd	chr2:96957463-96957730(-)$1	267	229	236	12.9827
eeeee!!	chr16:70301605-70301812(-)$1	207	42	49	13.8448
]ccc::E	chr5:154190974-154191213(+)$1	239	108	115	12.9827
ooobb22	chr3:184040868-184041079(+)$1	211	139	146	12.4655
mdddd22	chr17:80022685-80023003(-)$1	318	306	313	12.8103
eeeebb[	chr11:62364981-62365193(-)$1	212	137	144	12.9827
gggggg]	chr1:226567552-226567778(-)$1	226	56	63	13.8448
dddd]bb	chr22:42032454-42032717(+)$1	263	99	106	13.8448
}HHHHHH	chrX:39923604-39923907(-)$1	303	211	218	12.3793
[ccc!!c	chr14:102471353-102471589(+)$1	236	83	90	12.9827
eeeeddd	chr9:131750226-131750464(+)$1	238	103	110	13.8448
eeeee""	chr17:1580189-1580399(-)$1	210	4	11	13.4137
EEEEE::	chr2:15701253-15701534(-)$1	281	272	279	12.1206
ff]bb22	chr11:71726473-71726758(-)$1	285	255	262	12.9827
eeee[ff	chr3:184026395-184026635(+)$1	240	43	50	12.6379
ccc[ccc	chr7:2403923-2404173(+)$1	250	86	93	12.3793
:eeeee#	chr3:184025301-184025545(+)$1	244	3	10	16.5172
HHHHH}D	chr22:23523526-23523777(+)$1	251	228	235	16.5172
bdddd]d	chr9:139369612-139369876(-)$1	264	106	113	13.4137
qqqqqqd	chr1:19479752-19480004(-)$1	252	46	53	12.9827
=!!bb[b	chr19:10793254-10793481(+)$1	227	159	166	12.3793
EEEEE::	chr22:30740908-30741179(-)$1	271	263	270	16.5172

#DB
(((((((	chr17:80042100-80042322(-)$1	1	24	31	13.1551
...((((	chr2:96967243-96967488(-)$1	1	52	59	13.8448
.......	chr1:160267032-160267242(-)$1	1	102	109	12.3793
(((...(	chrX:39931950-39932220(-)$1	1	114	121	12.2068
(((((((	chr3:184045566-184045814(+)$1	1	161	168	13.8448
.)))).)	chr1:241803257-241803531(-)$1	1	127	134	12.9827
..)))))	chr9:133748217-133748466(+)$1	1	22	29	11.6896
))))..)	chr6:90529196-90529522(-)$1	1	275	282	16.5172
.).))))	chr19:50918060-50918310(+)$1	1	117	124	12.8103
(((((((	chr9:35711558-35711807(-)$1	1	77	84	12.9827
)))))))	chr9:35712873-35713137(-)$1	1	122	129	12.9827
.).))))	chr15:35261644-35261948(-)$1	1	145	152	12.8103
((((...	chr10:120801962-120802213(-)$1	1	122	129	13.8448
(((((((	chr3:184038969-184039219(+)$1	1	23	30	12.9827
(((...(	chr8:48744317-48744547(-)$1	1	20	27	12.6379
).)))))	chr9:139734867-139735142(+)$1	1	114	121	16.5172
((.((((	chr1:226567578-226567834(-)$1	1	112	119	13.8448
.((((((	chr5:149755887-149756183(+)$1	1	23	30	12.6379
(.((((.	chr1:19480221-19480501(-)$1	1	46	53	12.2068
)))))))	chr17:40120369-40120722(+)$1	1	249	256	12.9827
.))))))	chr2:230695371-230695656(-)$1	1	141	148	12.4655
(((((((	chr22:21800359-21800600(+)$1	1	51	58	12.8103
(((((..	chr16:70301598-70301800(-)$1	1	30	37	13.8448
.((((((	chr3:48646498-48646783(-)$1	1	207	214	12.4655
((((((.	chr5:10256031-10256295(+)$1	1	114	121	12.9827
(.((...	chr11:71724060-71724308(-)$1	1	38	45	13.4137
)))((((	chr14:102507952-102508163(+)$1	1	55	62	12.4655
.))))))	chr6:31749165-31749401(-)$1	1	121	128	13.4137
(((((((	chrX:153219912-153220142(-)$1	1	39	46	12.4655
)))....	chr2:54884906-54885177(+)$1	1	73	80	12.5517
.))))((	chr19:50905366-50905632(+)$1	1	212	219	11.6896
))))).)	chr2:54856566-54856861(+)$1	1	166	173	13.8448
(((((((	chr22:22893248-22893511(-)$1	1	68	75	13.1551
)))))).	chr12:120582085-120582328(-)$1	1	228	235	16.5172
.....))	chr19:17838140-17838442(+)$1	1	158	165	12.9827
.((((.(	chr19:10260118-10260378(-)$1	1	75	82	13.4137
)).))))	chr2:96957463-96957730(-)$1	1	229	236	12.9827
(((((..	chr16:70301605-70301812(-)$1	1	42	49	13.8448
.)))..)	chr5:154190974-154191213(+)$1	1	108	115	12.9827
...))..	chr3:184040868-184041079(+)$1	1	139	146	12.4655
.))))..	chr17:80022685-80023003(-)$1	1	306	313	12.8103
((((((.	chr11:62364981-62365193(-)$1	1	137	144	12.9827
)))))).	chr1:226567552-226567778(-)$1	1	56	63	13.8448
)))).))	chr22:42032454-42032717(+)$1	1	99	106	13.8448
.))))))	chrX:39923604-39923907(-)$1	1	211	218	12.3793
.(((..(	chr14:102471353-102471589(+)$1	1	83	90	12.9827
)))))))	chr9:131750226-131750464(+)$1	1	103	110	13.8448
(((((..	chr17:1580189-1580399(-)$1	1	4	11	13.4137
)))))..	chr2:15701253-15701534(-)$1	1	272	279	12.1206
)).))..	chr11:71726473-71726758(-)$1	1	255	262	12.9827
((((.((	chr3:184026395-184026635(+)$1	1	43	50	12.6379
(((.(((	chr7:2403923-2404173(+)$1	1	86	93	12.3793
.(((((.	chr3:184025301-184025545(+)$1	1	3	10	16.5172
))))).)	chr22:23523526-23523777(+)$1	1	228	235	16.5172
))))).)	chr9:139369612-139369876(-)$1	1	106	113	13.4137
......)	chr1:19479752-19480004(-)$1	1	46	53	12.9827
(..((.(	chr19:10793254-10793481(+)$1	1	159	166	12.3793
)))))..	chr22:30740908-30741179(-)$1	1	263	270	16.5172

#PSSM
U : 0.70	G : 0.17	C : 0.08	A : 0.03	
G : 0.98	U : 0.01	
G : 0.81	A : 0.10	C : 0.06	U : 0.01	
G : 0.89	A : 0.06	C : 0.03	
C : 0.89	G : 0.08	U : 0.01	
A : 0.82	U : 0.12	G : 0.05	
G : 0.98	C : 0.01	

#score	773.1724137931035
#seq	58
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_transcript_m1_run1.nuc.txt

#NT
acacacacauacacacacacacacacacacacacacacacaca	chrX:11203235-11203481(-)$1	246	172	215	109.8490
Ucacacacacacacacacacacacacacacacacacacacacc	chr10:118658891-118659148(-)$1	257	89	132	107.3018
auacacacacacacacacacacacacacauauauauacacaua	chr22:18459150-18459413(-)$1	263	83	126	91.4528
auacacacacacacacauacacacacacacauauacacaaaua	chr1:12667729-12667997(-)$1	268	114	157	91.9245
acacacacacacacacacacacacacacacacacacguacaca	chr3:43427948-43428244(-)$1	296	68	111	107.3018
acacacacacacacacacacauauauacacacacacacacaca	chr12:25022781-25023082(-)$1	301	123	166	101.6415
ACacacauacacauacacauacacauacacauacacauauaca	chr1:92774999-92775254(+)$1	255	92	135	85.6037
acacacacacacacacacacacacacacacacacacuacccag	chr15:20599652-20599908(-)$1	256	115	158	91.6415
CcacacacacacacacacacacacacacacacacacacacaAG	chr3:28351158-28351461(+)$1	303	153	196	104.0000
CUacacacacacacacacacacacacacacacacacgcacGCU	chr19:41938660-41938952(-)$1	292	228	271	96.0754
acacauacacacaaacacacaaacguacacauacaaacacaca	chr10:17422608-17422928(-)$1	320	63	106	83.9056
acacacaugcacacacacacacacacacacacacaugcacaca	chr1:206564834-206565158(+)$1	324	129	172	97.6792
AUAAacacacacacacacacacacacacacacacacacacacC	chr17:65977849-65978167(+)$1	318	129	172	104.0000
acacacacacacacacacacacacacacacacacacacacaca	chr19:29104367-29104633(+)$1	266	65	108	114.3773
acacacacacacacauacauacacacacacacacacacacaca	chr10:22092348-22092722(-)$1	374	149	192	105.5094
acacacaaauacacacucacacacacacacacacacacacaca	chr15:55518542-55518810(-)$1	268	60	103	100.6981
acacacacacacacacccacauacacacacacacacGAACAaa	chr3:183490438-183490692(+)$1	254	112	155	94.9433
acacacacacacacacacacacacacacacacacacacacaca	chr3:11520400-11520682(+)$1	282	63	106	114.3773
acacacacacacacacacacacacacacacacacacacacacC	chr7:112103800-112104047(+)$1	247	108	151	111.5471
acacacauacacacacauccacucacacacacccacucacauu	chr10:134229062-134229367(+)$1	305	2	45	82.3962
acacacacacacacacacacacacacacacacacacacacaUC	chr4:151592007-151592320(-)$1	313	127	170	108.6226
acacacacacacacacacacacacacacacacacacacacaca	chr18:9195989-9196215(+)$1	226	117	160	114.3773
acacacacacgcgcgcacacacacacacacacacacacacCUG	chr17:4794355-4794683(+)$1	328	125	168	89.5660
acacacgcacacacacacacacacacacacauacacUCUCAGU	chr3:122824456-122824743(+)$1	287	123	166	91.9245
acacacacacacacacacacacacacacacacacacacacaca	chr7:148543838-148544062(-)$1	224	87	130	114.3773
acacacacacacacacacacacacacacacacacacacacaca	chr17:44252511-44252792(-)$1	281	63	106	114.3773
CCAAacacacacacacacacacacacacacacacacacacacU	chr20:3946945-3947204(-)$1	259	46	89	103.2452
acacacacacacacacacacacacacacacacacacacacaca	chr15:66924957-66925250(+)$1	293	61	104	114.3773
acacacacacacacacacacacaaacacacacucacucacaca	chr12:96765596-96765892(-)$1	296	80	123	102.0188
acacacacacacacacacacacacacacacacacacgcacacC	chr2:15673675-15673919(-)$1	244	80	123	108.3396
acacacacagacacacacacacacacacacacacacacacaca	chr17:57949829-57950155(-)$1	326	55	98	109.7547
acacacacacacacacacacacacacacacauacacgcacaca	chr19:6805486-6805797(+)$1	311	108	151	108.0566
acacacacacacacacacacacacacacacacacacacacaca	chr1:93784738-93784993(-)$1	255	132	175	114.3773
acacacacacacacacacacacacacacacacacacacacaca	chr15:64493835-64494092(-)$1	257	142	185	114.3773
AUAAacacacacacacacacacacacacacacucacUCUCAAG	chr18:76893346-76893751(+)$1	405	158	201	88.0566
acacacacacacacacacacacacacacacacacacaaacuac	chr2:39685546-39685862(+)$1	316	63	106	99.8490
acacacacacacacacacacacacacacacacacacacacaca	chr9:94629805-94630048(-)$1	243	65	108	114.3773
acacacacacacacacauauauauacacacacauacguauaca	chr1:52253776-52253985(+)$1	209	51	94	81.6415
auacacacacacacacauacacacacacacauauacacaaaua	chr1:12667677-12667929(-)$1	252	46	89	91.9245
acacacacacacacacacacacacacacacacacacacacaca	chr1:36032156-36032441(+)$1	285	75	118	114.3773
acacauacacacacacacacacacacacacacacacagacacC	chr15:44588054-44588324(+)$1	270	55	98	102.9622
ucucacacacacacacacacacacacacacacacacacacacu	chr17:28498905-28499180(+)$1	275	44	87	102.3962
acacacacacacacacacacacacacacacacacacacacaca	chr5:118673655-118673937(+)$1	282	205	248	114.3773
acauacauacauacauacauacauacauacauacacacacaca	chr12:112644720-112644988(-)$1	268	33	76	80.4150
acacacacacacacacacacacacacacacacacacacacaca	chr1:21270269-21270543(-)$1	274	9	52	114.3773
acacacacacacacacacacacacacacacacacacacacaca	chrX:113150778-113151050(-)$1	272	132	175	114.3773
acacacacacacacacacacacacacacacacacacacacaca	chr14:73861533-73861844(-)$1	311	44	87	114.3773
acacacacacacacacacacacacacacacacacacacacaca	chr19:46892606-46892887(+)$1	281	13	56	114.3773
AUacauacacacacacacacacauauauauauacacacacaca	chr6:157991681-157992015(+)$1	334	99	142	85.6981
acacacacacacacacacacacacacacacauacacacacaca	chr5:65373568-65373836(+)$1	268	23	66	111.2641
CUGAacacacacacacacacacacacacacacacacacacaca	chr21:36237583-36237832(-)$1	249	206	249	98.0566
acacacacacacccacacacacacacacacacacacauacaua	chr15:44602583-44602910(+)$1	327	104	147	102.8679

#otherMatches

#Struct PSSM
MCCC:::::::::::::::::::::::::::::::::::ccc[	chr2:168720296-168720557(-)$1	261	16	59	107.2075
eee55555ggggggg::::::::::::::::::::::::::::	chrX:11203235-11203481(-)$1	246	172	215	109.8490
:::::::::::::::::::::::::::::::::::::::::::	chr10:118658891-118659148(-)$1	257	89	132	107.3018
==::::::::::::::::::::::::dddd[ffffffmmmmff	chr22:18459150-18459413(-)$1	263	83	126	91.4528
::::::::::::::::::::::::::::::eeeeeooooooee	chr1:12667729-12667997(-)$1	268	114	157	91.9245
::::::::::::::::::::::::::::::::::::cccoooo	chr3:43427948-43428244(-)$1	296	68	111	107.3018
::::::::::::::::::::::::::::::::::ccc[eeeee	chr12:25022781-25023082(-)$1	301	123	166	101.6415
:::::::::::::::::::::::::::::::::::::::::::	chr1:92774999-92775254(+)$1	255	92	135	85.6037
:::::::::::::::::::::::::::::::::dddd!!bb[b	chr15:20599652-20599908(-)$1	256	115	158	91.6415
qbb:::::::::::::::::::::::::::::::::::::::b	chr3:28351158-28351461(+)$1	303	153	196	104.0000
dd::::::::::::::::::::::::::::::::::::::GGG	chr19:41938660-41938952(-)$1	292	228	271	96.0754
::::::::::::::::::::::::dddd^^^^^^^^^^^^^^^	chr10:17422608-17422928(-)$1	320	63	106	83.9056
eee4444dddd::::::::::::::::::::::::::::::::	chr1:206564834-206565158(+)$1	324	129	172	97.6792
ooooccc::::::::::::::::::::::::::::DDDD????	chr17:65977849-65978167(+)$1	318	129	172	104.0000
CCC::::::::::::::::::::::::::::::::::::::::	chr19:29104367-29104633(+)$1	266	65	108	114.3773
^^^^^^^^^^^^^^^^eeeee22bb::::::::::::::::::	chr10:22092348-22092722(-)$1	374	149	192	105.5094
ee+++++++++++ggggggg[ccc^^^^^^^^^^^^^^^^^^^	chr15:55518542-55518810(-)$1	268	60	103	100.6981
d]bb::::::::::::::::::::::::::::::::GGGGGGG	chr3:183490438-183490692(+)$1	254	112	155	94.9433
]dddd::::::::::::::::::::::::::::::::::::::	chr3:11520400-11520682(+)$1	282	63	106	114.3773
f:::::::::::::::::::::::::::::::::::::::::b	chr7:112103800-112104047(+)$1	247	108	151	111.5471
:::::::::::::::::::::::::::::::::::::::::::	chr10:134229062-134229367(+)$1	305	2	45	82.3962
JJJ::::::::::::::::::::::::::::::::::::ccc!	chr4:151592007-151592320(-)$1	313	127	170	108.6226
:::::::::::::::::::::::::::::::::::::::::ii	chr18:9195989-9196215(+)$1	226	117	160	114.3773
CCC{EEEEE{CCC{CCC::::::::::::::::::::::dddd	chr17:4794355-4794683(+)$1	328	125	168	89.5660
2ccc22aggggggg:::::::::::::::::::::ccc[dddd	chr3:122824456-122824743(+)$1	287	123	166	91.9245
]dddd::::::::::::DDDDKKBBNNNNNCCCLLLDDDD{DD	chr7:148543838-148544062(-)$1	224	87	130	114.3773
:::::::::::::::::::::::::::::::::::::::::::	chr17:44252511-44252792(-)$1	281	63	106	114.3773
::::::::::::::::::::::::::::::::::::::::::f	chr20:3946945-3947204(-)$1	259	46	89	103.2452
:::::::::::::::::::::::::::::::::::::::::::	chr15:66924957-66925250(+)$1	293	61	104	114.3773
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]c	chr12:96765596-96765892(-)$1	296	80	123	102.0188
::::::::::::::::::::::::::::::EEEEE:eeeeezz	chr2:15673675-15673919(-)$1	244	80	123	108.3396
HHHHHHH{CCC::::::::::::::::::::::::::::::::	chr17:57949829-57950155(-)$1	326	55	98	109.7547
:::::::::::::::::::::::::::::::::::::::::::	chr19:6805486-6805797(+)$1	311	108	151	108.0566
ggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:93784738-93784993(-)$1	255	132	175	114.3773
444dddd::::::::::::::::::::::::::::::::::::	chr15:64493835-64494092(-)$1	257	142	185	114.3773
qqqqqccc:::::::::::::::HHHHHHHHNNNNNJJJJJJJ	chr18:76893346-76893751(+)$1	405	158	201	88.0566
:::::::::::::::::::::::::::::::::::::::::::	chr2:39685546-39685862(+)$1	316	63	106	99.8490
dddd]ccc:::::::::::::::::::::::::::::::::::	chr9:94629805-94630048(-)$1	243	65	108	114.3773
c+++++++++++++++hhhhhhhh++++++++++++ddddqqq	chr1:52253776-52253985(+)$1	209	51	94	81.6415
:::::::::::::::::::::::::::::::::::::::::::	chr1:12667677-12667929(-)$1	252	46	89	91.9245
GG{BB::::::::::::::::::::::::::::::::::::::	chr1:36032156-36032441(+)$1	285	75	118	114.3773
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:44588054-44588324(+)$1	270	55	98	102.9622
:::::::::::::::::::::::::::::::::::::::::::	chr17:28498905-28499180(+)$1	275	44	87	102.3962
:::::::::::::::::::::::::::::::::::::::::::	chr5:118673655-118673937(+)$1	282	205	248	114.3773
:::::::::::::::::::::::::::::::::::::::::::	chr12:112644720-112644988(-)$1	268	33	76	80.4150
:::::::::::::::::::::::::::::::::::::::::::	chr1:21270269-21270543(-)$1	274	9	52	114.3773
:::::::::::::::::::::::::::::::::::::::DDDD	chrX:113150778-113151050(-)$1	272	132	175	114.3773
:::::::::::::::::::::::::::::::::::::::::::	chr14:73861533-73861844(-)$1	311	44	87	114.3773
:::::::::::::::::::::::::::::::::::::::::::	chr19:46892606-46892887(+)$1	281	13	56	114.3773
^^^^^^^^^^^^^^^^^^^^============]ccc:::::::	chr6:157991681-157992015(+)$1	334	99	142	85.6981
:::::::::::::::::::::::::::::BB{GGGGGGG::::	chr5:65373568-65373836(+)$1	268	23	66	111.2641
fff22bbCCC:::::::::::::::::::::::::::::::::	chr21:36237583-36237832(-)$1	249	206	249	98.0566
=::::::::::::::::::::::::::::::::DDDDKKDDDD	chr15:44602583-44602910(+)$1	327	104	147	102.8679

#DB
.(((...................................(((.	chr2:168720296-168720557(-)$1	1	16	59	107.2075
))).....)))))))............................	chrX:11203235-11203481(-)$1	1	172	215	109.8490
...........................................	chr10:118658891-118659148(-)$1	1	89	132	107.3018
))........................((((.((((((....))	chr22:18459150-18459413(-)$1	1	83	126	91.4528
..............................(((((......))	chr1:12667729-12667997(-)$1	1	114	157	91.9245
....................................(((....	chr3:43427948-43428244(-)$1	1	68	111	107.3018
..................................(((.(((((	chr12:25022781-25023082(-)$1	1	123	166	101.6415
...........................................	chr1:92774999-92775254(+)$1	1	92	135	85.6037
.................................((((..((.(	chr15:20599652-20599908(-)$1	1	115	158	91.6415
.)).......................................(	chr3:28351158-28351461(+)$1	1	153	196	104.0000
))......................................)))	chr19:41938660-41938952(-)$1	1	228	271	96.0754
........................((((...............	chr10:17422608-17422928(-)$1	1	63	106	83.9056
)))....))))................................	chr1:206564834-206565158(+)$1	1	129	172	97.6792
....)))............................))))....	chr17:65977849-65978167(+)$1	1	129	172	104.0000
(((........................................	chr19:29104367-29104633(+)$1	1	65	108	114.3773
................)))))..))..................	chr10:22092348-22092722(-)$1	1	149	192	105.5094
((...........(((((((.(((...................	chr15:55518542-55518810(-)$1	1	60	103	100.6981
).))................................)))))))	chr3:183490438-183490692(+)$1	1	112	155	94.9433
.))))......................................	chr3:11520400-11520682(+)$1	1	63	106	114.3773
).........................................(	chr7:112103800-112104047(+)$1	1	108	151	111.5471
...........................................	chr10:134229062-134229367(+)$1	1	2	45	82.3962
(((....................................(((.	chr4:151592007-151592320(-)$1	1	127	170	108.6226
.........................................((	chr18:9195989-9196215(+)$1	1	117	160	114.3773
(((.(((((.(((.(((......................((((	chr17:4794355-4794683(+)$1	1	125	168	89.5660
.)))..)))))))).....................(((.((((	chr3:122824456-122824743(+)$1	1	123	166	91.9245
.))))............((((..((.....(((...((((.((	chr7:148543838-148544062(-)$1	1	87	130	114.3773
...........................................	chr17:44252511-44252792(-)$1	1	63	106	114.3773
..........................................(	chr20:3946945-3947204(-)$1	1	46	89	103.2452
...........................................	chr15:66924957-66925250(+)$1	1	61	104	114.3773
......................................))).)	chr12:96765596-96765892(-)$1	1	80	123	102.0188
..............................(((((.(((((..	chr2:15673675-15673919(-)$1	1	80	123	108.3396
(((((((.(((................................	chr17:57949829-57950155(-)$1	1	55	98	109.7547
...........................................	chr19:6805486-6805797(+)$1	1	108	151	108.0566
(((........................................	chr1:93784738-93784993(-)$1	1	132	175	114.3773
...))))....................................	chr15:64493835-64494092(-)$1	1	142	185	114.3773
.....)))...............((((((((.....(((((((	chr18:76893346-76893751(+)$1	1	158	201	88.0566
...........................................	chr2:39685546-39685862(+)$1	1	63	106	99.8490
)))).)))...................................	chr9:94629805-94630048(-)$1	1	65	108	114.3773
(...............((((((((............((((...	chr1:52253776-52253985(+)$1	1	51	94	81.6415
...........................................	chr1:12667677-12667929(-)$1	1	46	89	91.9245
((.((......................................	chr1:36032156-36032441(+)$1	1	75	118	114.3773
...........................................	chr15:44588054-44588324(+)$1	1	55	98	102.9622
...........................................	chr17:28498905-28499180(+)$1	1	44	87	102.3962
...........................................	chr5:118673655-118673937(+)$1	1	205	248	114.3773
...........................................	chr12:112644720-112644988(-)$1	1	33	76	80.4150
...........................................	chr1:21270269-21270543(-)$1	1	9	52	114.3773
.......................................((((	chrX:113150778-113151050(-)$1	1	132	175	114.3773
...........................................	chr14:73861533-73861844(-)$1	1	44	87	114.3773
...........................................	chr19:46892606-46892887(+)$1	1	13	56	114.3773
....................)))))))))))).))).......	chr6:157991681-157992015(+)$1	1	99	142	85.6981
.............................((.(((((((....	chr5:65373568-65373836(+)$1	1	23	66	111.2641
)))..))))).................................	chr21:36237583-36237832(-)$1	1	206	249	98.0566
)................................((((..((((	chr15:44602583-44602910(+)$1	1	104	147	102.8679

#PSSM
a : 0.81	A : 0.07	C : 0.07	U : 0.01	u : 0.01	
c : 0.81	U : 0.09	u : 0.05	C : 0.03	
a : 0.90	A : 0.05	u : 0.01	G : 0.01	
c : 0.88	A : 0.07	u : 0.03	
a : 0.99	
c : 0.94	u : 0.05	
a : 0.98	g : 0.01	
c : 0.90	u : 0.07	a : 0.01	
a : 0.98	g : 0.01	
c : 0.94	u : 0.03	g : 0.01	
a : 0.98	g : 0.01	
c : 0.98	u : 0.01	
a : 0.96	g : 0.01	c : 0.01	
c : 0.96	u : 0.01	a : 0.01	
a : 0.98	g : 0.01	
c : 0.96	u : 0.03	
a : 0.96	u : 0.01	c : 0.01	
c : 0.92	u : 0.07	
a : 0.98	c : 0.01	
c : 0.92	u : 0.07	
a : 0.99	
c : 0.92	u : 0.05	a : 0.01	
a : 0.98	u : 0.01	
c : 0.90	u : 0.07	a : 0.01	
a : 0.98	g : 0.01	
c : 0.92	u : 0.07	
a : 0.99	
c : 0.96	u : 0.03	
a : 0.99	
c : 0.96	u : 0.03	
a : 0.99	
c : 0.81	u : 0.18	
a : 0.94	u : 0.03	c : 0.01	
c : 0.92	u : 0.07	
a : 0.99	
c : 0.94	u : 0.03	a : 0.01	
a : 0.77	g : 0.11	u : 0.05	U : 0.03	G : 0.01	
c : 0.81	u : 0.07	a : 0.03	C : 0.03	A : 0.01	g : 0.01	
a : 0.92	U : 0.03	c : 0.01	A : 0.01	
c : 0.86	C : 0.05	a : 0.03	u : 0.03	
a : 0.86	A : 0.05	c : 0.01	G : 0.01	C : 0.01	u : 0.01	
c : 0.71	u : 0.11	a : 0.05	A : 0.03	U : 0.03	C : 0.01	G : 0.01	
a : 0.69	C : 0.09	G : 0.05	U : 0.05	c : 0.03	u : 0.03	g : 0.01	

#score	5457.000000000001
#seq	53
#width	43
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_UTR_m2_run1.nuc.txt

#NT
CCUCCCACCC	chr2:168811828-168812081(-)$1	253	159	169	24.2857
ccuccagccc	chr19:45323399-45323659(+)$1	260	34	44	18.0612
CCUCCCCCCC	chr19:42799007-42799376(+)$1	369	289	299	22.4489
CCUCCCCCCA	chr11:2153787-2153992(-)$1	205	28	38	18.3673
UCUCCCUCCC	chr17:45608387-45608709(+)$1	322	95	105	19.5918
CCUCCCUCCC	chr17:36883020-36883265(+)$1	245	16	26	23.7755
CCUCCAGCCC	chr20:43560907-43561168(+)$1	261	75	85	18.0612
CCUCCUUCCC	chr14:35098775-35099075(-)$1	300	1	11	19.4897
CCUGCCACCC	chr16:28914932-28915246(+)$1	314	169	179	19.8979
CCUCCCCCCC	chr17:4801036-4801343(+)$1	307	240	250	22.4489
CCUCCCACCC	chr2:242694494-242694853(+)$1	359	214	224	24.2857
CCUCCCUCCC	chr19:54972975-54973245(+)$1	270	8	18	23.7755
CCUCCCUCCA	chr3:9975612-9975870(+)$1	258	86	96	19.6938
CCACCCUCCC	chr17:40466330-40466618(-)$1	288	111	121	19.6938
CCUCCCACUC	chr14:24616100-24616352(-)$1	252	131	141	19.4897
ccucccuccC	chr17:36698316-36698569(-)$1	253	26	36	23.7755
CCUCCCUCCA	chr1:27480961-27481274(-)$1	313	281	291	19.6938
CCUCCCACCC	chr22:38013019-38013303(+)$1	284	160	170	24.2857
CCCCCCACCC	chr17:47004394-47004686(+)$1	292	154	164	20.2040
CCUCCCACCC	chr1:9662332-9662617(+)$1	285	110	120	24.2857
ccucccuccc	chr10:102283751-102284071(-)$1	320	99	109	23.7755
CCUCCCUCCC	chr19:46283865-46284157(-)$1	292	97	107	23.7755
CCUGCCACCC	chr17:36891487-36891832(-)$1	345	117	127	19.8979
UCUCCCACCC	chr7:1028623-1028846(+)$1	223	101	111	20.1020
CCUCCCACCC	chr16:58699427-58699750(-)$1	323	88	98	24.2857
CCUCCCACCC	chr16:24942291-24942596(-)$1	305	5	15	24.2857
ccucccaccc	chr9:139942818-139943174(-)$1	356	149	159	24.2857
CCUCCCAACC	chr14:23778636-23778927(+)$1	291	129	139	19.8979
CCCCCCACCC	chr12:7024636-7024892(+)$1	256	226	236	20.2040
CCCCCCACCC	chr19:47220021-47220287(-)$1	266	2	12	20.2040
ucucccuccc	chr20:31611281-31611515(+)$1	234	65	75	19.5918
ccucccgccc	chr12:53845996-53846232(+)$1	236	103	113	22.2448
CCUCCCACCC	chr7:1028326-1028639(+)$1	313	184	194	24.2857
CCUCCCUCCU	chr2:242754337-242754621(+)$1	284	115	125	19.3877
CUUCCCUCCC	chr11:825013-825247(+)$1	234	47	57	18.9795
ccuccaaccc	chr19:45323714-45323945(+)$1	231	29	39	20.1020
CCUCCCCCCA	chr11:2153792-2154002(-)$1	210	38	48	18.3673
CCUCCCCACC	chr1:46713626-46713922(+)$1	296	11	21	18.0612
ucucccaccc	chr2:46770458-46770744(+)$1	286	59	69	20.1020
ccacccaccc	chr9:139942752-139943002(-)$1	250	3	13	20.2040
ccucccACCC	chr17:36904474-36904741(-)$1	267	136	146	24.2857
ccuuccuccc	chr22:30805156-30805419(-)$1	263	122	132	19.3877
ccuccuuccc	chr19:56671815-56672085(+)$1	270	31	41	19.4897
CCUCCCUCCC	chr19:1394434-1394807(+)$1	373	13	23	23.7755
CCACCCACCC	chr17:36891428-36891687(-)$1	259	57	67	20.2040
CCUUCCACCC	chr16:22545756-22545989(+)$1	233	110	120	19.8979
CCUCCCUCCC	chr12:31257189-31257464(+)$1	275	199	209	23.7755
CCUCCCAGCC	chr19:5896240-5896482(-)$1	242	48	58	19.8979

#otherMatches

#Struct PSSM
DDKKEEEEEK	chr16:28890381-28890751(+)$1	370	122	132	19.3877
''''''''bb	chr2:168811828-168812081(-)$1	253	159	169	24.2857
::::::::::	chr19:45323399-45323659(+)$1	260	34	44	18.0612
gggg]ccc::	chr19:42799007-42799376(+)$1	369	289	299	22.4489
^^^^^^^^^^	chr11:2153787-2153992(-)$1	205	28	38	18.3673
::::::::::	chr17:45608387-45608709(+)$1	322	95	105	19.5918
EEEE{DDDD:	chr17:36883020-36883265(+)$1	245	16	26	23.7755
iiippppppp	chr20:43560907-43561168(+)$1	261	75	85	18.0612
EEEEEMMMMD	chr14:35098775-35099075(-)$1	300	1	11	19.4897
::ccc####e	chr16:28914932-28915246(+)$1	314	169	179	19.8979
iiiiii333e	chr17:4801036-4801343(+)$1	307	240	250	22.4489
::::::::::	chr2:242694494-242694853(+)$1	359	214	224	24.2857
[a!!eeeee^	chr19:54972975-54973245(+)$1	270	8	18	23.7755
ssssssssss	chr3:9975612-9975870(+)$1	258	86	96	19.6938
eeee55555e	chr17:40466330-40466618(-)$1	288	111	121	19.6938
::::::HHHH	chr14:24616100-24616352(-)$1	252	131	141	19.4897
hhhhhh::::	chr17:36698316-36698569(-)$1	253	26	36	23.7755
4444a22ddd	chr1:27480961-27481274(-)$1	313	281	291	19.6938
HHHHHH::::	chr22:38013019-38013303(+)$1	284	160	170	24.2857
::::DDDDCC	chr17:47004394-47004686(+)$1	292	154	164	20.2040
FFFFFF}CCC	chr1:9662332-9662617(+)$1	285	110	120	24.2857
WWWWWWWWWW	chr10:102283751-102284071(-)$1	320	99	109	23.7755
777=======	chr19:46283865-46284157(-)$1	292	97	107	23.7755
d]bb333a]c	chr17:36891487-36891832(-)$1	345	117	127	19.8979
FFFFFF::ee	chr7:1028623-1028846(+)$1	223	101	111	20.1020
::::::::::	chr16:58699427-58699750(-)$1	323	88	98	24.2857
::::::::::	chr16:24942291-24942596(-)$1	305	5	15	24.2857
d:::::::::	chr9:139942818-139943174(-)$1	356	149	159	24.2857
::::::::::	chr14:23778636-23778927(+)$1	291	129	139	19.8979
|FFFFFF:::	chr12:7024636-7024892(+)$1	256	226	236	20.2040
::::::::::	chr19:47220021-47220287(-)$1	266	2	12	20.2040
pppppppccc	chr20:31611281-31611515(+)$1	234	65	75	19.5918
cnnnnnccc:	chr12:53845996-53846232(+)$1	236	103	113	22.2448
=======###	chr7:1028326-1028639(+)$1	313	184	194	24.2857
::::::::::	chr2:242754337-242754621(+)$1	284	115	125	19.3877
::::::::::	chr11:825013-825247(+)$1	234	47	57	18.9795
^^^^^^^^^^	chr19:45323714-45323945(+)$1	231	29	39	20.1020
^^^^^^^^^^	chr11:2153792-2154002(-)$1	210	38	48	18.3673
ddrrrrrrrr	chr1:46713626-46713922(+)$1	296	11	21	18.0612
=ffffffddd	chr2:46770458-46770744(+)$1	286	59	69	20.1020
:::GGGGGGG	chr9:139942752-139943002(-)$1	250	3	13	20.2040
ZZZEEEEE::	chr17:36904474-36904741(-)$1	267	136	146	24.2857
::::::::::	chr22:30805156-30805419(-)$1	263	122	132	19.3877
GGGGGKKEEE	chr19:56671815-56672085(+)$1	270	31	41	19.4897
eeee&&&&&&	chr19:1394434-1394807(+)$1	373	13	23	23.7755
d+++++++++	chr17:36891428-36891687(-)$1	259	57	67	20.2040
:::::::::C	chr16:22545756-22545989(+)$1	233	110	120	19.8979
::::::::::	chr12:31257189-31257464(+)$1	275	199	209	23.7755
::::::ccc!	chr19:5896240-5896482(-)$1	242	48	58	19.8979

#DB
((..(((((.	chr16:28890381-28890751(+)$1	1	122	132	19.3877
........((	chr2:168811828-168812081(-)$1	1	159	169	24.2857
..........	chr19:45323399-45323659(+)$1	1	34	44	18.0612
)))).)))..	chr19:42799007-42799376(+)$1	1	289	299	22.4489
..........	chr11:2153787-2153992(-)$1	1	28	38	18.3673
..........	chr17:45608387-45608709(+)$1	1	95	105	19.5918
((((.((((.	chr17:36883020-36883265(+)$1	1	16	26	23.7755
(((.......	chr20:43560907-43561168(+)$1	1	75	85	18.0612
(((((....(	chr14:35098775-35099075(-)$1	1	1	11	19.4897
..(((....(	chr16:28914932-28915246(+)$1	1	169	179	19.8979
))))))...)	chr17:4801036-4801343(+)$1	1	240	250	22.4489
..........	chr2:242694494-242694853(+)$1	1	214	224	24.2857
.(..(((((.	chr19:54972975-54973245(+)$1	1	8	18	23.7755
..........	chr3:9975612-9975870(+)$1	1	86	96	19.6938
)))).....)	chr17:40466330-40466618(-)$1	1	111	121	19.6938
......))))	chr14:24616100-24616352(-)$1	1	131	141	19.4897
))))))....	chr17:36698316-36698569(-)$1	1	26	36	23.7755
....)..)))	chr1:27480961-27481274(-)$1	1	281	291	19.6938
))))))....	chr22:38013019-38013303(+)$1	1	160	170	24.2857
....((((((	chr17:47004394-47004686(+)$1	1	154	164	20.2040
)))))).)))	chr1:9662332-9662617(+)$1	1	110	120	24.2857
..........	chr10:102283751-102284071(-)$1	1	99	109	23.7755
...)))))))	chr19:46283865-46284157(-)$1	1	97	107	23.7755
).))...).)	chr17:36891487-36891832(-)$1	1	117	127	19.8979
((((((..((	chr7:1028623-1028846(+)$1	1	101	111	20.1020
..........	chr16:58699427-58699750(-)$1	1	88	98	24.2857
..........	chr16:24942291-24942596(-)$1	1	5	15	24.2857
).........	chr9:139942818-139943174(-)$1	1	149	159	24.2857
..........	chr14:23778636-23778927(+)$1	1	129	139	19.8979
.))))))...	chr12:7024636-7024892(+)$1	1	226	236	20.2040
..........	chr19:47220021-47220287(-)$1	1	2	12	20.2040
.......)))	chr20:31611281-31611515(+)$1	1	65	75	19.5918
(.....))).	chr12:53845996-53846232(+)$1	1	103	113	22.2448
(((((((...	chr7:1028326-1028639(+)$1	1	184	194	24.2857
..........	chr2:242754337-242754621(+)$1	1	115	125	19.3877
..........	chr11:825013-825247(+)$1	1	47	57	18.9795
..........	chr19:45323714-45323945(+)$1	1	29	39	20.1020
..........	chr11:2153792-2154002(-)$1	1	38	48	18.3673
((........	chr1:46713626-46713922(+)$1	1	11	21	18.0612
((((((((((	chr2:46770458-46770744(+)$1	1	59	69	20.1020
...(((((((	chr9:139942752-139943002(-)$1	1	3	13	20.2040
...)))))..	chr17:36904474-36904741(-)$1	1	136	146	24.2857
..........	chr22:30805156-30805419(-)$1	1	122	132	19.3877
(((((..(((	chr19:56671815-56672085(+)$1	1	31	41	19.4897
((((......	chr19:1394434-1394807(+)$1	1	13	23	23.7755
(.........	chr17:36891428-36891687(-)$1	1	57	67	20.2040
.........)	chr16:22545756-22545989(+)$1	1	110	120	19.8979
..........	chr12:31257189-31257464(+)$1	1	199	209	23.7755
......(((.	chr19:5896240-5896482(-)$1	1	48	58	19.8979

#PSSM
C : 0.71	c : 0.20	U : 0.04	u : 0.04	
C : 0.73	c : 0.24	U : 0.02	
U : 0.65	u : 0.22	C : 0.06	A : 0.04	a : 0.02	
C : 0.69	c : 0.22	G : 0.04	u : 0.02	U : 0.02	
C : 0.75	c : 0.24	
C : 0.71	c : 0.18	a : 0.04	A : 0.02	U : 0.02	u : 0.02	
A : 0.38	U : 0.26	C : 0.10	u : 0.10	a : 0.08	g : 0.04	G : 0.02	
C : 0.69	c : 0.22	G : 0.04	A : 0.04	
C : 0.75	c : 0.22	U : 0.02	
C : 0.69	c : 0.20	A : 0.08	U : 0.02	

#score	1037.7551020408173
#seq	49
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_transcript_m2_run1.nuc.txt

#NT
UGUGUG	chr17:79963696-79963943(+)$1	247	25	31	18.0000
UGUGUG	chr19:941436-941683(+)$1	247	47	53	18.0000
ugugug	chr14:95058979-95059196(+)$1	217	101	107	18.0000
ugugug	chr9:95971059-95971375(+)$1	316	6	12	18.0000
ugugug	chr2:20417997-20418320(-)$1	323	2	8	18.0000
UGUGUG	chr17:7012840-7013106(-)$1	266	39	45	18.0000
UGUGUG	chr2:241900425-241900675(-)$1	250	18	24	18.0000
UGUGUG	chr7:158155931-158156208(-)$1	277	6	12	18.0000
ugugug	chr16:1788796-1789082(+)$1	286	22	28	18.0000
ugugug	chr14:105338812-105339111(+)$1	299	6	12	18.0000
UGUGUG	chr5:139032781-139033036(+)$1	255	172	178	18.0000
UGUGUG	chr2:236419818-236420092(+)$1	274	142	148	18.0000
UGUGUG	chr21:44268646-44268919(-)$1	273	29	35	18.0000
UGUGUG	chr2:241564546-241564820(+)$1	274	123	129	18.0000
UGUGUG	chr16:1784856-1785105(+)$1	249	25	31	18.0000
ugugug	chr9:137231892-137232169(+)$1	277	17	23	18.0000
UGUGUG	chr1:2167562-2167828(+)$1	266	93	99	18.0000
ugugug	chr2:241900718-241901034(-)$1	316	7	13	18.0000
ugugug	chr20:62653278-62653558(+)$1	280	10	16	18.0000
UGUGUG	chr6:7129553-7129870(+)$1	317	134	140	18.0000
ugugug	chr7:157667152-157667512(-)$1	360	17	23	18.0000
UGUGUG	chr1:2164838-2165122(+)$1	284	98	104	18.0000
ugugug	chr7:73910071-73910381(+)$1	310	279	285	18.0000
ugugug	chr17:79048563-79048835(+)$1	272	15	21	18.0000
UGUGUG	chr1:44059081-44059347(+)$1	266	5	11	18.0000
UGUGUG	chr1:2199100-2199339(+)$1	239	77	83	18.0000
UGUGUG	chr8:22245036-22245327(+)$1	291	112	118	18.0000
ugugug	chr10:135221574-135221855(+)$1	281	62	68	18.0000
ugugug	chr5:176516865-176517138(+)$1	273	94	100	18.0000
ugugug	chr11:61039174-61039427(-)$1	253	22	28	18.0000
ugugug	chr19:941751-942014(+)$1	263	14	20	18.0000
ugugug	chr14:39835939-39836262(+)$1	323	195	201	18.0000
UGUGUG	chr11:374240-374501(+)$1	261	199	205	18.0000
UGUGUG	chr16:89371853-89372139(-)$1	286	97	103	18.0000
UGUGUG	chr18:74114091-74114395(-)$1	304	187	193	18.0000
ugugug	chr1:2191421-2191683(+)$1	262	188	194	18.0000
UGUGUG	chr16:589774-590041(+)$1	267	240	246	18.0000
UGUGUG	chr9:137234468-137234721(+)$1	253	55	61	18.0000
UGUGUG	chr1:2207978-2208224(+)$1	246	99	105	18.0000
UGUGUG	chr19:947037-947261(+)$1	224	129	135	18.0000
UGUGUG	chr17:75494955-75495215(+)$1	260	109	115	18.0000
ugugug	chr7:216608-216854(+)$1	246	1	7	18.0000
UGUGUG	chr17:79477348-79477571(-)$1	223	186	192	18.0000
UGUGUG	chr1:33789810-33790073(-)$1	263	181	187	18.0000
UGUGUG	chr2:20451138-20451400(-)$1	262	107	113	18.0000
UGUGUG	chr9:137246159-137246423(+)$1	264	98	104	18.0000
UGUGUG	chr7:47391310-47391597(-)$1	287	29	35	18.0000
UGUGUG	chr11:61633935-61634215(+)$1	280	247	253	18.0000
UGUGUG	chr11:716766-717052(+)$1	286	128	134	18.0000

#otherMatches

#Struct PSSM
ccc[ii	chr2:231912123-231912351(+)$1	228	146	152	18.0000
EEEMMM	chr17:79963696-79963943(+)$1	247	25	31	18.0000
dddd$$	chr19:941436-941683(+)$1	247	47	53	18.0000
FFFDDD	chr14:95058979-95059196(+)$1	217	101	107	18.0000
FFF:::	chr9:95971059-95971375(+)$1	316	6	12	18.0000
:::::b	chr2:20417997-20418320(-)$1	323	2	8	18.0000
4fffff	chr17:7012840-7013106(-)$1	266	39	45	18.0000
mmmiii	chr2:241900425-241900675(-)$1	250	18	24	18.0000
::::::	chr7:158155931-158156208(-)$1	277	6	12	18.0000
:::a[c	chr16:1788796-1789082(+)$1	286	22	28	18.0000
======	chr14:105338812-105339111(+)$1	299	6	12	18.0000
f55555	chr5:139032781-139033036(+)$1	255	172	178	18.0000
ccc!!c	chr2:236419818-236420092(+)$1	274	142	148	18.0000
hooooo	chr21:44268646-44268919(-)$1	273	29	35	18.0000
mmcccD	chr2:241564546-241564820(+)$1	274	123	129	18.0000
####gg	chr16:1784856-1785105(+)$1	249	25	31	18.0000
zzzzzc	chr9:137231892-137232169(+)$1	277	17	23	18.0000
{CCCLL	chr1:2167562-2167828(+)$1	266	93	99	18.0000
dooooo	chr2:241900718-241901034(-)$1	316	7	13	18.0000
[=====	chr20:62653278-62653558(+)$1	280	10	16	18.0000
DDEEEE	chr6:7129553-7129870(+)$1	317	134	140	18.0000
EEEBBL	chr7:157667152-157667512(-)$1	360	17	23	18.0000
GGG{DD	chr1:2164838-2165122(+)$1	284	98	104	18.0000
b]bb]c	chr7:73910071-73910381(+)$1	310	279	285	18.0000
iiiiii	chr17:79048563-79048835(+)$1	272	15	21	18.0000
gggg[b	chr1:44059081-44059347(+)$1	266	5	11	18.0000
ee[a[f	chr1:2199100-2199339(+)$1	239	77	83	18.0000
bb]ccc	chr8:22245036-22245327(+)$1	291	112	118	18.0000
nnnnna	chr10:135221574-135221855(+)$1	281	62	68	18.0000
c55555	chr5:176516865-176517138(+)$1	273	94	100	18.0000
###ccc	chr11:61039174-61039427(-)$1	253	22	28	18.0000
KCCC{B	chr19:941751-942014(+)$1	263	14	20	18.0000
IIIIII	chr14:39835939-39836262(+)$1	323	195	201	18.0000
EEEEED	chr11:374240-374501(+)$1	261	199	205	18.0000
ggg]a]	chr16:89371853-89372139(-)$1	286	97	103	18.0000
FF{BBL	chr18:74114091-74114395(-)$1	304	187	193	18.0000
oooooa	chr1:2191421-2191683(+)$1	262	188	194	18.0000
EEEE}D	chr16:589774-590041(+)$1	267	240	246	18.0000
E{DDDD	chr9:137234468-137234721(+)$1	253	55	61	18.0000
ccc:cc	chr1:2207978-2208224(+)$1	246	99	105	18.0000
fuuuuu	chr19:947037-947261(+)$1	224	129	135	18.0000
fff:dd	chr17:75494955-75495215(+)$1	260	109	115	18.0000
:::::B	chr7:216608-216854(+)$1	246	1	7	18.0000
dddppp	chr17:79477348-79477571(-)$1	223	186	192	18.0000
qa]ddd	chr1:33789810-33790073(-)$1	263	181	187	18.0000
fffff[	chr2:20451138-20451400(-)$1	262	107	113	18.0000
DDD{FF	chr9:137246159-137246423(+)$1	264	98	104	18.0000
c[a[cc	chr7:47391310-47391597(-)$1	287	29	35	18.0000
eeemmm	chr11:61633935-61634215(+)$1	280	247	253	18.0000
ffff%%	chr11:716766-717052(+)$1	286	128	134	18.0000

#DB
(((.((	chr2:231912123-231912351(+)$1	1	146	152	18.0000
(((...	chr17:79963696-79963943(+)$1	1	25	31	18.0000
((((..	chr19:941436-941683(+)$1	1	47	53	18.0000
))))))	chr14:95058979-95059196(+)$1	1	101	107	18.0000
(((...	chr9:95971059-95971375(+)$1	1	6	12	18.0000
.....(	chr2:20417997-20418320(-)$1	1	2	8	18.0000
.)))))	chr17:7012840-7013106(-)$1	1	39	45	18.0000
...)))	chr2:241900425-241900675(-)$1	1	18	24	18.0000
......	chr7:158155931-158156208(-)$1	1	6	12	18.0000
...(.(	chr16:1788796-1789082(+)$1	1	22	28	18.0000
((((((	chr14:105338812-105339111(+)$1	1	6	12	18.0000
).....	chr5:139032781-139033036(+)$1	1	172	178	18.0000
(((..(	chr2:236419818-236420092(+)$1	1	142	148	18.0000
(.....	chr21:44268646-44268919(-)$1	1	29	35	18.0000
..))))	chr2:241564546-241564820(+)$1	1	123	129	18.0000
....((	chr16:1784856-1785105(+)$1	1	25	31	18.0000
.....)	chr9:137231892-137232169(+)$1	1	17	23	18.0000
.(((..	chr1:2167562-2167828(+)$1	1	93	99	18.0000
(.....	chr2:241900718-241901034(-)$1	1	7	13	18.0000
.(((((	chr20:62653278-62653558(+)$1	1	10	16	18.0000
((((((	chr6:7129553-7129870(+)$1	1	134	140	18.0000
(((((.	chr7:157667152-157667512(-)$1	1	17	23	18.0000
(((.((	chr1:2164838-2165122(+)$1	1	98	104	18.0000
).)).)	chr7:73910071-73910381(+)$1	1	279	285	18.0000
))))))	chr17:79048563-79048835(+)$1	1	15	21	18.0000
((((.(	chr1:44059081-44059347(+)$1	1	5	11	18.0000
((.(.(	chr1:2199100-2199339(+)$1	1	77	83	18.0000
)).)))	chr8:22245036-22245327(+)$1	1	112	118	18.0000
.....)	chr10:135221574-135221855(+)$1	1	62	68	18.0000
).....	chr5:176516865-176517138(+)$1	1	94	100	18.0000
...(((	chr11:61039174-61039427(-)$1	1	22	28	18.0000
.(((.(	chr19:941751-942014(+)$1	1	14	20	18.0000
))))))	chr14:39835939-39836262(+)$1	1	195	201	18.0000
))))))	chr11:374240-374501(+)$1	1	199	205	18.0000
))).).	chr16:89371853-89372139(-)$1	1	97	103	18.0000
((.((.	chr18:74114091-74114395(-)$1	1	187	193	18.0000
.....)	chr1:2191421-2191683(+)$1	1	188	194	18.0000
)))).)	chr16:589774-590041(+)$1	1	240	246	18.0000
(.((((	chr9:137234468-137234721(+)$1	1	55	61	18.0000
))).((	chr1:2207978-2208224(+)$1	1	99	105	18.0000
(.....	chr19:947037-947261(+)$1	1	129	135	18.0000
))).((	chr17:75494955-75495215(+)$1	1	109	115	18.0000
.....(	chr7:216608-216854(+)$1	1	1	7	18.0000
(((...	chr17:79477348-79477571(-)$1	1	186	192	18.0000
.).)))	chr1:33789810-33790073(-)$1	1	181	187	18.0000
(((((.	chr2:20451138-20451400(-)$1	1	107	113	18.0000
(((.((	chr9:137246159-137246423(+)$1	1	98	104	18.0000
(.(.((	chr7:47391310-47391597(-)$1	1	29	35	18.0000
(((...	chr11:61633935-61634215(+)$1	1	247	253	18.0000
((((..	chr11:716766-717052(+)$1	1	128	134	18.0000

#PSSM
U : 0.62	u : 0.38	
G : 0.62	g : 0.38	
U : 0.62	u : 0.38	
G : 0.62	g : 0.38	
U : 0.62	u : 0.38	
G : 0.62	g : 0.38	

#score	900.0000000000001
#seq	50
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_UTR_m3_run2.nuc.txt

#NT
GGGGUGGG	chr14:70238272-70238493(+)$1	221	10	18	20.7543
GGGGAGGG	chr16:89663170-89663457(+)$1	287	210	218	17.4210
GGUGUGGG	chr19:11664218-11664512(-)$1	294	39	47	16.1052
GGGGUGGG	chr2:220403054-220403302(+)$1	248	99	107	20.7543
GGGGUGGG	chr19:47724074-47724348(-)$1	274	9	17	20.7543
GGGCUGGG	chr11:63678106-63678358(+)$1	252	232	240	16.9824
GGGGUGGG	chr1:150594825-150595102(-)$1	277	39	47	20.7543
GGGGUGAG	chr19:41133114-41133361(+)$1	247	181	189	16.1052
GGGAUGGG	chr9:139566780-139567024(+)$1	244	132	140	16.8070
GGGCUGGG	chr2:27249612-27249855(+)$1	243	62	70	16.9824
GGGGAGGG	chr16:30535528-30535773(-)$1	245	234	242	17.4210
GGGGCGGG	chr19:46112612-46112947(-)$1	335	138	146	16.8947
GGGGUAGG	chr11:62360892-62361140(-)$1	248	42	50	16.6315
GGGGUGGG	chr15:74702113-74702364(-)$1	251	74	82	20.7543
GGGCUGGG	chr1:150533052-150533344(+)$1	292	135	143	16.9824
GGGGUAGG	chr19:39875465-39875711(+)$1	246	217	225	16.6315
UGGGUGGG	chr11:252645-252882(+)$1	237	49	57	16.0175
GGGGUGGG	chr16:2820945-2821171(+)$1	226	141	149	20.7543
GGGCUGGG	chr16:67262778-67263047(+)$1	269	12	20	16.9824
GGGAUGGG	chr19:54972205-54972426(+)$1	221	101	109	16.8070
GGGGUUGG	chr11:64789262-64789533(+)$1	271	130	138	16.7192
GGGGUGGU	chr16:31202323-31202531(+)$1	208	59	67	16.0175
AGGGUGGG	chr1:45116444-45116726(+)$1	282	256	264	16.0175
GGGGAGGG	chr1:26144324-26144585(+)$1	261	78	86	17.4210
GGGGUGGA	chr16:83842809-83843128(+)$1	319	165	173	16.0175
GUGGUGGG	chr8:145649322-145649549(-)$1	227	123	131	16.0175
GGGGCGGG	chr20:17594281-17594585(-)$1	304	105	113	16.8947
GGGGUGGG	chr5:177022788-177023070(+)$1	282	234	242	20.7543
GGGGUUGG	chr16:29822004-29822266(+)$1	262	114	122	16.7192
GGGGUGGG	chr11:71949779-71950050(+)$1	271	35	43	20.7543
GGGUUGGG	chr6:30668090-30668369(-)$1	279	18	26	16.6315
GGGGUGGG	chr3:186507217-186507469(+)$1	252	49	57	20.7543
GGGGUUGG	chr11:64789333-64789627(+)$1	294	59	67	16.7192
GGGGUGGG	chr15:74701883-74702160(-)$1	277	70	78	20.7543
GGGGAGGG	chr6:32948759-32948980(+)$1	221	120	128	17.4210
GGGAUGGG	chr7:98993976-98994225(-)$1	249	84	92	16.8070
gggguggg	chrX:153609583-153609816(+)$1	233	44	52	20.7543
GGGGUGGG	chr16:30535630-30535888(-)$1	258	66	74	20.7543
GGGGUGAG	chr12:6857220-6857458(-)$1	238	40	48	16.1052
GGGGUGGG	chr12:120532917-120533208(-)$1	291	137	145	20.7543
GGGGUGGG	chr3:10192128-10192380(+)$1	252	104	112	20.7543
GGGGUGGG	chr3:48481604-48481822(+)$1	218	155	163	20.7543
GGGGUAGG	chr19:49653923-49654176(+)$1	253	158	166	16.6315
GGGGAGGG	chr1:1431245-1431568(+)$1	323	31	39	17.4210
GGGGGGGG	chr19:40721230-40721528(+)$1	298	98	106	16.8070
GGGGUGGG	chr20:62331530-62331811(-)$1	281	100	108	20.7543
GGGGAGGG	chr1:59247138-59247424(-)$1	286	20	28	17.4210
GGGGUGGG	chr19:42751746-42752008(-)$1	262	173	181	20.7543
GGGGUUGG	chr19:17342822-17343124(-)$1	302	263	271	16.7192
GGGGAGGG	chr11:62393085-62393342(-)$1	257	78	86	17.4210
GGGGUGGG	chr11:64534271-64534564(-)$1	293	218	226	20.7543
GGGGUGGG	chr16:30535371-30535608(-)$1	237	162	170	20.7543
GGGGUGGG	chr5:150480617-150480987(-)$1	370	80	88	20.7543
GGGGAGGG	chr16:3071985-3072269(+)$1	284	116	124	17.4210
GGGCUGGG	chr17:7307218-7307484(-)$1	266	172	180	16.9824
GAGGUGGG	chr14:21269475-21269753(-)$1	278	175	183	16.0175

#otherMatches

#Struct PSSM
oooooccc	chr19:50372358-50372622(-)$1	264	243	251	16.1052
c[ccc[a[	chr14:70238272-70238493(+)$1	221	10	18	20.7543
ddd22ddd	chr16:89663170-89663457(+)$1	287	210	218	17.4210
nnnnccc]	chr19:11664218-11664512(-)$1	294	39	47	16.1052
eeeee[bb	chr2:220403054-220403302(+)$1	248	99	107	20.7543
CCC{DDDD	chr19:47724074-47724348(-)$1	274	9	17	20.7543
ggg22ggg	chr11:63678106-63678358(+)$1	252	232	240	16.9824
ppppppee	chr1:150594825-150595102(-)$1	277	39	47	20.7543
C}DDDD}E	chr19:41133114-41133361(+)$1	247	181	189	16.1052
FFFFFccc	chr9:139566780-139567024(+)$1	244	132	140	16.8070
ccc[dddd	chr2:27249612-27249855(+)$1	243	62	70	16.9824
ccc22eee	chr16:30535528-30535773(-)$1	245	234	242	17.4210
hh]adddd	chr19:46112612-46112947(-)$1	335	138	146	16.8947
ccc]dddd	chr11:62360892-62361140(-)$1	248	42	50	16.6315
a]ccc]bb	chr15:74702113-74702364(-)$1	251	74	82	20.7543
ffff[eee	chr1:150533052-150533344(+)$1	292	135	143	16.9824
GGGGZZZE	chr19:39875465-39875711(+)$1	246	217	225	16.6315
:::::GGG	chr11:252645-252882(+)$1	237	49	57	16.0175
]a]a]ddd	chr16:2820945-2821171(+)$1	226	141	149	20.7543
eee!!ccc	chr16:67262778-67263047(+)$1	269	12	20	16.9824
ggggggg[	chr19:54972205-54972426(+)$1	221	101	109	16.8070
hhhhhhhh	chr11:64789262-64789533(+)$1	271	130	138	16.7192
22ffffff	chr16:31202323-31202531(+)$1	208	59	67	16.0175
eeeehhhh	chr1:45116444-45116726(+)$1	282	256	264	16.0175
gggg====	chr1:26144324-26144585(+)$1	261	78	86	17.4210
hhhhh]ee	chr16:83842809-83843128(+)$1	319	165	173	16.0175
ccffffff	chr8:145649322-145649549(-)$1	227	123	131	16.0175
EEEEEYYD	chr20:17594281-17594585(-)$1	304	105	113	16.8947
ff]hhhhh	chr5:177022788-177023070(+)$1	282	234	242	20.7543
hhh66666	chr16:29822004-29822266(+)$1	262	114	122	16.7192
hhhhhhhf	chr11:71949779-71950050(+)$1	271	35	43	20.7543
HHHHHHLL	chr6:30668090-30668369(-)$1	279	18	26	16.6315
{DDDD{CC	chr3:186507217-186507469(+)$1	252	49	57	20.7543
c=======	chr11:64789333-64789627(+)$1	294	59	67	16.7192
ddd[ffff	chr15:74701883-74702160(-)$1	277	70	78	20.7543
eeee]iii	chr6:32948759-32948980(+)$1	221	120	128	17.4210
========	chr7:98993976-98994225(-)$1	249	84	92	16.8070
cccc!!==	chrX:153609583-153609816(+)$1	233	44	52	20.7543
eeeeebb2	chr16:30535630-30535888(-)$1	258	66	74	20.7543
cdddd[dd	chr12:6857220-6857458(-)$1	238	40	48	16.1052
e]adddd]	chr12:120532917-120533208(-)$1	291	137	145	20.7543
GGG}Aa[e	chr3:10192128-10192380(+)$1	252	104	112	20.7543
JJJJJJJZ	chr3:48481604-48481822(+)$1	218	155	163	20.7543
======]g	chr19:49653923-49654176(+)$1	253	158	166	16.6315
FFF::eee	chr1:1431245-1431568(+)$1	323	31	39	17.4210
JJJdddd[	chr19:40721230-40721528(+)$1	298	98	106	16.8070
bb]eeeee	chr20:62331530-62331811(-)$1	281	100	108	20.7543
CC{CCC{F	chr1:59247138-59247424(-)$1	286	20	28	17.4210
DDA}JJJJ	chr19:42751746-42752008(-)$1	262	173	181	20.7543
eeee22dd	chr19:17342822-17343124(-)$1	302	263	271	16.7192
HHHHHHHK	chr11:62393085-62393342(-)$1	257	78	86	17.4210
HHHHHHHY	chr11:64534271-64534564(-)$1	293	218	226	20.7543
ddccc%%%	chr16:30535371-30535608(-)$1	237	162	170	20.7543
JJJJJJJJ	chr5:150480617-150480987(-)$1	370	80	88	20.7543
========	chr16:3071985-3072269(+)$1	284	116	124	17.4210
========	chr17:7307218-7307484(-)$1	266	172	180	16.9824
cc[ddddl	chr14:21269475-21269753(-)$1	278	175	183	16.0175

#DB
.....)))	chr19:50372358-50372622(-)$1	1	243	251	16.1052
(.(((.(.	chr14:70238272-70238493(+)$1	1	10	18	20.7543
)))..)))	chr16:89663170-89663457(+)$1	1	210	218	17.4210
....))).	chr19:11664218-11664512(-)$1	1	39	47	16.1052
(((((.((	chr2:220403054-220403302(+)$1	1	99	107	20.7543
(((.((((	chr19:47724074-47724348(-)$1	1	9	17	20.7543
)))..)))	chr11:63678106-63678358(+)$1	1	232	240	16.9824
......))	chr1:150594825-150595102(-)$1	1	39	47	20.7543
).)))).)	chr19:41133114-41133361(+)$1	1	181	189	16.1052
((((((((	chr9:139566780-139567024(+)$1	1	132	140	16.8070
(((.((((	chr2:27249612-27249855(+)$1	1	62	70	16.9824
)))..)))	chr16:30535528-30535773(-)$1	1	234	242	17.4210
)).)((((	chr19:46112612-46112947(-)$1	1	138	146	16.8947
))).))))	chr11:62360892-62361140(-)$1	1	42	50	16.6315
).))).))	chr15:74702113-74702364(-)$1	1	74	82	20.7543
((((.(((	chr1:150533052-150533344(+)$1	1	135	143	16.9824
))))...)	chr19:39875465-39875711(+)$1	1	217	225	16.6315
.....(((	chr11:252645-252882(+)$1	1	49	57	16.0175
.).).)))	chr16:2820945-2821171(+)$1	1	141	149	20.7543
(((..(((	chr16:67262778-67263047(+)$1	1	12	20	16.9824
(((((((.	chr19:54972205-54972426(+)$1	1	101	109	16.8070
)))))))(	chr11:64789262-64789533(+)$1	1	130	138	16.7192
..))))))	chr16:31202323-31202531(+)$1	1	59	67	16.0175
))))))))	chr1:45116444-45116726(+)$1	1	256	264	16.0175
))))((((	chr1:26144324-26144585(+)$1	1	78	86	17.4210
))))).))	chr16:83842809-83843128(+)$1	1	165	173	16.0175
))))))))	chr8:145649322-145649549(-)$1	1	123	131	16.0175
)))))..)	chr20:17594281-17594585(-)$1	1	105	113	16.8947
)).)))))	chr5:177022788-177023070(+)$1	1	234	242	20.7543
))).....	chr16:29822004-29822266(+)$1	1	114	122	16.7192
)))))))(	chr11:71949779-71950050(+)$1	1	35	43	20.7543
((((((..	chr6:30668090-30668369(-)$1	1	18	26	16.6315
.((((.((	chr3:186507217-186507469(+)$1	1	49	57	20.7543
((((((((	chr11:64789333-64789627(+)$1	1	59	67	16.7192
(((.((((	chr15:74701883-74702160(-)$1	1	70	78	20.7543
)))).)))	chr6:32948759-32948980(+)$1	1	120	128	17.4210
))))))))	chr7:98993976-98994225(-)$1	1	84	92	16.8070
((((..((	chrX:153609583-153609816(+)$1	1	44	52	20.7543
))))))).	chr16:30535630-30535888(-)$1	1	66	74	20.7543
)((((.((	chr12:6857220-6857458(-)$1	1	40	48	16.1052
).))))).	chr12:120532917-120533208(-)$1	1	137	145	20.7543
))).)(.(	chr3:10192128-10192380(+)$1	1	104	112	20.7543
))))))).	chr3:48481604-48481822(+)$1	1	155	163	20.7543
)))))).)	chr19:49653923-49654176(+)$1	1	158	166	16.6315
(((..(((	chr1:1431245-1431568(+)$1	1	31	39	17.4210
(((((((.	chr19:40721230-40721528(+)$1	1	98	106	16.8070
)).)))))	chr20:62331530-62331811(-)$1	1	100	108	20.7543
((.(((.(	chr1:59247138-59247424(-)$1	1	20	28	17.4210
))).))))	chr19:42751746-42752008(-)$1	1	173	181	20.7543
))))..))	chr19:17342822-17343124(-)$1	1	263	271	16.7192
(((((((.	chr11:62393085-62393342(-)$1	1	78	86	17.4210
))))))).	chr11:64534271-64534564(-)$1	1	218	226	20.7543
(((((...	chr16:30535371-30535608(-)$1	1	162	170	20.7543
((((((((	chr5:150480617-150480987(-)$1	1	80	88	20.7543
((((((((	chr16:3071985-3072269(+)$1	1	116	124	17.4210
((((((((	chr17:7307218-7307484(-)$1	1	172	180	16.9824
((.((((.	chr14:21269475-21269753(-)$1	1	175	183	16.0175

#PSSM
G : 0.94	U : 0.01	A : 0.01	g : 0.01	
G : 0.94	U : 0.01	g : 0.01	A : 0.01	
G : 0.94	U : 0.03	g : 0.01	
G : 0.82	C : 0.08	A : 0.05	U : 0.01	g : 0.01	
U : 0.78	A : 0.14	C : 0.03	u : 0.01	G : 0.01	
G : 0.85	U : 0.07	A : 0.05	g : 0.01	
G : 0.94	A : 0.03	g : 0.01	
G : 0.94	U : 0.01	A : 0.01	g : 0.01	

#score	1034.315789473686
#seq	57
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_CDS_m1_run2.nuc.txt

#NT
CAG	chr2:220432301-220432541(-)$1	240	21	24	9.0000
CAG	chr6:151738274-151738543(-)$1	269	29	32	9.0000
CAG	chr17:30694884-30695143(+)$1	259	11	14	9.0000
CAG	chr19:43998836-43999102(-)$1	266	62	65	9.0000
CAG	chr2:219433597-219433844(+)$1	247	10	13	9.0000
CAG	chr16:67263591-67263840(-)$1	249	4	7	9.0000
CAG	chr12:57572700-57572950(+)$1	250	1	4	9.0000
CAG	chr21:36258990-36259264(-)$1	274	1	4	9.0000
CAG	chr8:25193760-25194023(+)$1	263	32	35	9.0000
CAG	chr1:201351228-201351494(-)$1	266	37	40	9.0000
CAG	chr19:12814400-12814647(-)$1	247	29	32	9.0000
CAG	chrX:54040651-54040946(-)$1	295	15	18	9.0000
CAG	chr20:4882943-4883207(-)$1	264	0	3	9.0000
CAG	chr19:1251545-1251792(+)$1	247	12	15	9.0000
CAG	chr14:21559420-21559671(-)$1	251	63	66	9.0000
CAG	chr2:96076214-96076468(+)$1	254	1	4	9.0000
CAG	chr22:36914660-36914913(-)$1	253	26	29	9.0000
CAG	chr3:50293625-50293919(+)$1	294	26	29	9.0000
CAG	chr7:98741201-98741465(-)$1	264	82	85	9.0000
CAG	chr6:30888967-30889215(+)$1	248	36	39	9.0000
CAG	chr14:31398271-31398529(-)$1	258	56	59	9.0000
CAG	chr22:50316846-50317110(+)$1	264	13	16	9.0000
CAG	chr16:85813814-85814098(-)$1	284	16	19	9.0000
CAG	chr8:21827710-21827959(+)$1	249	12	15	9.0000
CAG	chr9:2047109-2047362(+)$1	253	0	3	9.0000
CAG	chr10:101610452-101610693(+)$1	241	4	7	9.0000
CAG	chr8:27629879-27630144(-)$1	265	104	107	9.0000
CAG	chr22:20755540-20755797(+)$1	257	1	4	9.0000
CAG	chr12:118575847-118576056(+)$1	209	13	16	9.0000
CAG	chr19:35550606-35550906(+)$1	300	58	61	9.0000
CAG	chr20:61436244-61436480(+)$1	236	79	82	9.0000
CAG	chr11:65819865-65820132(+)$1	267	21	24	9.0000
CAG	chr3:53892727-53892974(+)$1	247	15	18	9.0000
CAG	chr7:111423776-111424052(-)$1	276	41	44	9.0000
CAG	chr12:124017569-124017822(-)$1	253	96	99	9.0000
CAG	chr9:107562653-107562918(-)$1	265	18	21	9.0000
CAG	chr17:73974896-73975150(-)$1	254	13	16	9.0000
CAG	chr1:45097799-45098234(+)$1	435	12	15	9.0000
CAG	chr6:158994439-158994688(+)$1	249	9	12	9.0000
CAG	chr6:43738941-43739204(+)$1	263	223	226	9.0000
CAG	chr15:90775297-90775558(-)$1	261	5	8	9.0000
CAG	chr14:31591983-31592274(-)$1	291	43	46	9.0000
CAG	chr17:73815761-73816016(+)$1	255	70	73	9.0000
CAG	chr14:81965679-81965951(-)$1	272	61	64	9.0000
CAG	chr14:64906855-64907144(+)$1	289	11	14	9.0000
CAG	chr12:53861003-53861261(+)$1	258	16	19	9.0000
CAG	chr19:10431506-10431752(-)$1	246	1	4	9.0000
CAG	chr1:23758050-23758307(-)$1	257	5	8	9.0000
CAG	chr19:4475452-4475711(+)$1	259	92	95	9.0000
CAG	chr17:76816933-76817207(-)$1	274	26	29	9.0000
CAG	chr21:45213086-45213332(+)$1	246	60	63	9.0000
CAG	chr10:81109324-81109558(+)$1	234	17	20	9.0000
CAG	chr18:47017634-47017896(-)$1	262	4	7	9.0000
cag	chr10:75559649-75559898(+)$1	249	2	5	9.0000
CAG	chr22:36901799-36902071(-)$1	272	22	25	9.0000
CAG	chr20:44433897-44434148(+)$1	251	44	47	9.0000
CAG	chr11:71192899-71193254(+)$1	355	66	69	9.0000
CAG	chr19:3981228-3981444(-)$1	216	31	34	9.0000
CAG	chr20:37652299-37652579(+)$1	280	30	33	9.0000
CAG	chr3:184104622-184104836(+)$1	214	7	10	9.0000
CAG	chr16:692118-692392(+)$1	274	9	12	9.0000
CAG	chr19:59067906-59068159(-)$1	253	8	11	9.0000
CAG	chr12:3147149-3147424(+)$1	275	16	19	9.0000
CAG	chr3:128987741-128987992(+)$1	251	30	33	9.0000
CAG	chr4:2513562-2513832(+)$1	270	8	11	9.0000
CAG	chr16:75267688-75267958(-)$1	270	19	22	9.0000
CAG	chr7:150774589-150774836(-)$1	247	38	41	9.0000
CAG	chr12:7086375-7086642(-)$1	267	15	18	9.0000
CAG	chr1:48697150-48697402(+)$1	252	4	7	9.0000
CAG	chr19:7670251-7670493(+)$1	242	49	52	9.0000
CAG	chr22:37911832-37912114(-)$1	282	20	23	9.0000
CAG	chr16:426439-426670(-)$1	231	64	67	9.0000
CAG	chr17:12043073-12043339(+)$1	266	204	207	9.0000
CAG	chr17:80048109-80048359(-)$1	250	24	27	9.0000
CAG	chr20:60881685-60881896(+)$1	211	5	8	9.0000
CAG	chr22:40803464-40803734(+)$1	270	20	23	9.0000
CAG	chr18:55288788-55289067(-)$1	279	79	82	9.0000
CAG	chr3:185216474-185216737(-)$1	263	104	107	9.0000
CAG	chr7:45148315-45148527(-)$1	212	34	37	9.0000
CAG	chr20:20599780-20600040(-)$1	260	17	20	9.0000
CAG	chr14:105935704-105935958(+)$1	254	50	53	9.0000
CAG	chr7:150767556-150767797(+)$1	241	3	6	9.0000
CAG	chr20:57466790-57467029(+)$1	239	8	11	9.0000
CAG	chr21:45213173-45213435(+)$1	262	23	26	9.0000
CAG	chr19:1119759-1120017(-)$1	258	67	70	9.0000
CAG	chr16:90102890-90103144(+)$1	254	17	20	9.0000
CAG	chr5:175956944-175957189(-)$1	245	18	21	9.0000
CAG	chr17:73872225-73872445(-)$1	220	1	4	9.0000
CAG	chr16:87393756-87394037(-)$1	281	62	65	9.0000
CAG	chr6:34825579-34825834(+)$1	255	21	24	9.0000
CAG	chr9:139702674-139702925(+)$1	251	10	13	9.0000
CAG	chr7:127721445-127721699(+)$1	254	9	12	9.0000
CAG	chr16:67179163-67179424(+)$1	261	18	21	9.0000
CAG	chr8:145619449-145619701(-)$1	252	3	6	9.0000
CAG	chr18:77794551-77794762(+)$1	211	26	29	9.0000
CAG	chr17:41606730-41606972(-)$1	242	121	124	9.0000
CAG	chr8:141572379-141572659(-)$1	280	10	13	9.0000
CAG	chr17:7214687-7214939(+)$1	252	17	20	9.0000
CAG	chr6:79787301-79787520(-)$1	219	48	51	9.0000

#otherMatches

#Struct PSSM
ddd	chr2:75113404-75113650(+)$1	246	13	16	9.0000
JJJ	chr2:220432301-220432541(-)$1	240	21	24	9.0000
ddd	chr6:151738274-151738543(-)$1	269	29	32	9.0000
EEE	chr17:30694884-30695143(+)$1	259	11	14	9.0000
GGK	chr19:43998836-43999102(-)$1	266	62	65	9.0000
{EE	chr2:219433597-219433844(+)$1	247	10	13	9.0000
:A{	chr16:67263591-67263840(-)$1	249	4	7	9.0000
:::	chr12:57572700-57572950(+)$1	250	1	4	9.0000
:::	chr21:36258990-36259264(-)$1	274	1	4	9.0000
ctt	chr8:25193760-25194023(+)$1	263	32	35	9.0000
44f	chr1:201351228-201351494(-)$1	266	37	40	9.0000
GGG	chr19:12814400-12814647(-)$1	247	29	32	9.0000
bb!	chrX:54040651-54040946(-)$1	295	15	18	9.0000
:::	chr20:4882943-4883207(-)$1	264	0	3	9.0000
:::	chr19:1251545-1251792(+)$1	247	12	15	9.0000
::b	chr14:21559420-21559671(-)$1	251	63	66	9.0000
DDD	chr2:96076214-96076468(+)$1	254	1	4	9.0000
III	chr22:36914660-36914913(-)$1	253	26	29	9.0000
ccc	chr3:50293625-50293919(+)$1	294	26	29	9.0000
b55	chr7:98741201-98741465(-)$1	264	82	85	9.0000
mmd	chr6:30888967-30889215(+)$1	248	36	39	9.0000
cc:	chr14:31398271-31398529(-)$1	258	56	59	9.0000
c""	chr22:50316846-50317110(+)$1	264	13	16	9.0000
F:c	chr16:85813814-85814098(-)$1	284	16	19	9.0000
fff	chr8:21827710-21827959(+)$1	249	12	15	9.0000
:gg	chr9:2047109-2047362(+)$1	253	0	3	9.0000
::D	chr10:101610452-101610693(+)$1	241	4	7	9.0000
dJJ	chr8:27629879-27630144(-)$1	265	104	107	9.0000
:::	chr22:20755540-20755797(+)$1	257	1	4	9.0000
ccq	chr12:118575847-118576056(+)$1	209	13	16	9.0000
bb]	chr19:35550606-35550906(+)$1	300	58	61	9.0000
CKK	chr20:61436244-61436480(+)$1	236	79	82	9.0000
ddd	chr11:65819865-65820132(+)$1	267	21	24	9.0000
DDD	chr3:53892727-53892974(+)$1	247	15	18	9.0000
SSD	chr7:111423776-111424052(-)$1	276	41	44	9.0000
ccn	chr12:124017569-124017822(-)$1	253	96	99	9.0000
mmm	chr9:107562653-107562918(-)$1	265	18	21	9.0000
ppp	chr17:73974896-73975150(-)$1	254	13	16	9.0000
{CC	chr1:45097799-45098234(+)$1	435	12	15	9.0000
CC{	chr6:158994439-158994688(+)$1	249	9	12	9.0000
eee	chr6:43738941-43739204(+)$1	263	223	226	9.0000
BFF	chr15:90775297-90775558(-)$1	261	5	8	9.0000
ggg	chr14:31591983-31592274(-)$1	291	43	46	9.0000
:::	chr17:73815761-73816016(+)$1	255	70	73	9.0000
qqq	chr14:81965679-81965951(-)$1	272	61	64	9.0000
eer	chr14:64906855-64907144(+)$1	289	11	14	9.0000
H:d	chr12:53861003-53861261(+)$1	258	16	19	9.0000
::b	chr19:10431506-10431752(-)$1	246	1	4	9.0000
DDD	chr1:23758050-23758307(-)$1	257	5	8	9.0000
FFF	chr19:4475452-4475711(+)$1	259	92	95	9.0000
ndd	chr17:76816933-76817207(-)$1	274	26	29	9.0000
C:e	chr21:45213086-45213332(+)$1	246	60	63	9.0000
fff	chr10:81109324-81109558(+)$1	234	17	20	9.0000
EEE	chr18:47017634-47017896(-)$1	262	4	7	9.0000
dd#	chr10:75559649-75559898(+)$1	249	2	5	9.0000
EEd	chr22:36901799-36902071(-)$1	272	22	25	9.0000
ggg	chr20:44433897-44434148(+)$1	251	44	47	9.0000
!!e	chr11:71192899-71193254(+)$1	355	66	69	9.0000
III	chr19:3981228-3981444(-)$1	216	31	34	9.0000
HDD	chr20:37652299-37652579(+)$1	280	30	33	9.0000
GGG	chr3:184104622-184104836(+)$1	214	7	10	9.0000
C:F	chr16:692118-692392(+)$1	274	9	12	9.0000
KDD	chr19:59067906-59068159(-)$1	253	8	11	9.0000
FFF	chr12:3147149-3147424(+)$1	275	16	19	9.0000
eee	chr3:128987741-128987992(+)$1	251	30	33	9.0000
g[b	chr4:2513562-2513832(+)$1	270	8	11	9.0000
EEE	chr16:75267688-75267958(-)$1	270	19	22	9.0000
GGG	chr7:150774589-150774836(-)$1	247	38	41	9.0000
A:b	chr12:7086375-7086642(-)$1	267	15	18	9.0000
EEE	chr1:48697150-48697402(+)$1	252	4	7	9.0000
::f	chr19:7670251-7670493(+)$1	242	49	52	9.0000
F::	chr22:37911832-37912114(-)$1	282	20	23	9.0000
##=	chr16:426439-426670(-)$1	231	64	67	9.0000
qhh	chr17:12043073-12043339(+)$1	266	204	207	9.0000
ccc	chr17:80048109-80048359(-)$1	250	24	27	9.0000
ddd	chr20:60881685-60881896(+)$1	211	5	8	9.0000
DDD	chr22:40803464-40803734(+)$1	270	20	23	9.0000
:::	chr18:55288788-55289067(-)$1	279	79	82	9.0000
JJJ	chr3:185216474-185216737(-)$1	263	104	107	9.0000
ddd	chr7:45148315-45148527(-)$1	212	34	37	9.0000
III	chr20:20599780-20600040(-)$1	260	17	20	9.0000
hnn	chr14:105935704-105935958(+)$1	254	50	53	9.0000
:::	chr7:150767556-150767797(+)$1	241	3	6	9.0000
ttt	chr20:57466790-57467029(+)$1	239	8	11	9.0000
fff	chr21:45213173-45213435(+)$1	262	23	26	9.0000
fff	chr19:1119759-1120017(-)$1	258	67	70	9.0000
hhh	chr16:90102890-90103144(+)$1	254	17	20	9.0000
ccc	chr5:175956944-175957189(-)$1	245	18	21	9.0000
ddd	chr17:73872225-73872445(-)$1	220	1	4	9.0000
ccq	chr16:87393756-87394037(-)$1	281	62	65	9.0000
FFF	chr6:34825579-34825834(+)$1	255	21	24	9.0000
oof	chr9:139702674-139702925(+)$1	251	10	13	9.0000
DDK	chr7:127721445-127721699(+)$1	254	9	12	9.0000
ggg	chr16:67179163-67179424(+)$1	261	18	21	9.0000
D:d	chr8:145619449-145619701(-)$1	252	3	6	9.0000
:GG	chr18:77794551-77794762(+)$1	211	26	29	9.0000
ggg	chr17:41606730-41606972(-)$1	242	121	124	9.0000
mmc	chr8:141572379-141572659(-)$1	280	10	13	9.0000
ppp	chr17:7214687-7214939(+)$1	252	17	20	9.0000
eee	chr6:79787301-79787520(-)$1	219	48	51	9.0000

#DB
(((	chr2:75113404-75113650(+)$1	1	13	16	9.0000
(((	chr2:220432301-220432541(-)$1	1	21	24	9.0000
(((	chr6:151738274-151738543(-)$1	1	29	32	9.0000
(((	chr17:30694884-30695143(+)$1	1	11	14	9.0000
((.	chr19:43998836-43999102(-)$1	1	62	65	9.0000
.((	chr2:219433597-219433844(+)$1	1	10	13	9.0000
.(.	chr16:67263591-67263840(-)$1	1	4	7	9.0000
...	chr12:57572700-57572950(+)$1	1	1	4	9.0000
...	chr21:36258990-36259264(-)$1	1	1	4	9.0000
(..	chr8:25193760-25194023(+)$1	1	32	35	9.0000
..)	chr1:201351228-201351494(-)$1	1	37	40	9.0000
(((	chr19:12814400-12814647(-)$1	1	29	32	9.0000
((.	chrX:54040651-54040946(-)$1	1	15	18	9.0000
...	chr20:4882943-4883207(-)$1	1	0	3	9.0000
...	chr19:1251545-1251792(+)$1	1	12	15	9.0000
..(	chr14:21559420-21559671(-)$1	1	63	66	9.0000
(((	chr2:96076214-96076468(+)$1	1	1	4	9.0000
(((	chr22:36914660-36914913(-)$1	1	26	29	9.0000
)))	chr3:50293625-50293919(+)$1	1	26	29	9.0000
)..	chr7:98741201-98741465(-)$1	1	82	85	9.0000
..)	chr6:30888967-30889215(+)$1	1	36	39	9.0000
)).	chr14:31398271-31398529(-)$1	1	56	59	9.0000
(..	chr22:50316846-50317110(+)$1	1	13	16	9.0000
(.(	chr16:85813814-85814098(-)$1	1	16	19	9.0000
(((	chr8:21827710-21827959(+)$1	1	12	15	9.0000
.((	chr9:2047109-2047362(+)$1	1	0	3	9.0000
..(	chr10:101610452-101610693(+)$1	1	4	7	9.0000
)))	chr8:27629879-27630144(-)$1	1	104	107	9.0000
...	chr22:20755540-20755797(+)$1	1	1	4	9.0000
((.	chr12:118575847-118576056(+)$1	1	13	16	9.0000
)).	chr19:35550606-35550906(+)$1	1	58	61	9.0000
(..	chr20:61436244-61436480(+)$1	1	79	82	9.0000
(((	chr11:65819865-65820132(+)$1	1	21	24	9.0000
(((	chr3:53892727-53892974(+)$1	1	15	18	9.0000
..(	chr7:111423776-111424052(-)$1	1	41	44	9.0000
((.	chr12:124017569-124017822(-)$1	1	96	99	9.0000
...	chr9:107562653-107562918(-)$1	1	18	21	9.0000
...	chr17:73974896-73975150(-)$1	1	13	16	9.0000
.((	chr1:45097799-45098234(+)$1	1	12	15	9.0000
((.	chr6:158994439-158994688(+)$1	1	9	12	9.0000
(((	chr6:43738941-43739204(+)$1	1	223	226	9.0000
(((	chr15:90775297-90775558(-)$1	1	5	8	9.0000
(((	chr14:31591983-31592274(-)$1	1	43	46	9.0000
...	chr17:73815761-73816016(+)$1	1	70	73	9.0000
...	chr14:81965679-81965951(-)$1	1	61	64	9.0000
((.	chr14:64906855-64907144(+)$1	1	11	14	9.0000
(.(	chr12:53861003-53861261(+)$1	1	16	19	9.0000
..(	chr19:10431506-10431752(-)$1	1	1	4	9.0000
(((	chr1:23758050-23758307(-)$1	1	5	8	9.0000
(((	chr19:4475452-4475711(+)$1	1	92	95	9.0000
.))	chr17:76816933-76817207(-)$1	1	26	29	9.0000
(.(	chr21:45213086-45213332(+)$1	1	60	63	9.0000
)))	chr10:81109324-81109558(+)$1	1	17	20	9.0000
(((	chr18:47017634-47017896(-)$1	1	4	7	9.0000
((.	chr10:75559649-75559898(+)$1	1	2	5	9.0000
(((	chr22:36901799-36902071(-)$1	1	22	25	9.0000
(((	chr20:44433897-44434148(+)$1	1	44	47	9.0000
..(	chr11:71192899-71193254(+)$1	1	66	69	9.0000
(((	chr19:3981228-3981444(-)$1	1	31	34	9.0000
(((	chr20:37652299-37652579(+)$1	1	30	33	9.0000
(((	chr3:184104622-184104836(+)$1	1	7	10	9.0000
(.(	chr16:692118-692392(+)$1	1	9	12	9.0000
.((	chr19:59067906-59068159(-)$1	1	8	11	9.0000
(((	chr12:3147149-3147424(+)$1	1	16	19	9.0000
)))	chr3:128987741-128987992(+)$1	1	30	33	9.0000
(.(	chr4:2513562-2513832(+)$1	1	8	11	9.0000
(((	chr16:75267688-75267958(-)$1	1	19	22	9.0000
(((	chr7:150774589-150774836(-)$1	1	38	41	9.0000
(.(	chr12:7086375-7086642(-)$1	1	15	18	9.0000
(((	chr1:48697150-48697402(+)$1	1	4	7	9.0000
..(	chr19:7670251-7670493(+)$1	1	49	52	9.0000
(..	chr22:37911832-37912114(-)$1	1	20	23	9.0000
..(	chr16:426439-426670(-)$1	1	64	67	9.0000
.))	chr17:12043073-12043339(+)$1	1	204	207	9.0000
)))	chr17:80048109-80048359(-)$1	1	24	27	9.0000
(((	chr20:60881685-60881896(+)$1	1	5	8	9.0000
(((	chr22:40803464-40803734(+)$1	1	20	23	9.0000
...	chr18:55288788-55289067(-)$1	1	79	82	9.0000
)))	chr3:185216474-185216737(-)$1	1	104	107	9.0000
(((	chr7:45148315-45148527(-)$1	1	34	37	9.0000
(((	chr20:20599780-20600040(-)$1	1	17	20	9.0000
(..	chr14:105935704-105935958(+)$1	1	50	53	9.0000
...	chr7:150767556-150767797(+)$1	1	3	6	9.0000
...	chr20:57466790-57467029(+)$1	1	8	11	9.0000
(((	chr21:45213173-45213435(+)$1	1	23	26	9.0000
(((	chr19:1119759-1120017(-)$1	1	67	70	9.0000
(((	chr16:90102890-90103144(+)$1	1	17	20	9.0000
)))	chr5:175956944-175957189(-)$1	1	18	21	9.0000
(((	chr17:73872225-73872445(-)$1	1	1	4	9.0000
((.	chr16:87393756-87394037(-)$1	1	62	65	9.0000
(((	chr6:34825579-34825834(+)$1	1	21	24	9.0000
..)	chr9:139702674-139702925(+)$1	1	10	13	9.0000
((.	chr7:127721445-127721699(+)$1	1	9	12	9.0000
(((	chr16:67179163-67179424(+)$1	1	18	21	9.0000
(.(	chr8:145619449-145619701(-)$1	1	3	6	9.0000
.((	chr18:77794551-77794762(+)$1	1	26	29	9.0000
(((	chr17:41606730-41606972(-)$1	1	121	124	9.0000
..)	chr8:141572379-141572659(-)$1	1	10	13	9.0000
...	chr17:7214687-7214939(+)$1	1	17	20	9.0000
(((	chr6:79787301-79787520(-)$1	1	48	51	9.0000

#PSSM
C : 0.99	c : 0.01	
A : 0.99	a : 0.01	
G : 0.99	g : 0.01	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_transcript_m3_run2.nuc.txt

#NT
GAA	chr17:80190708-80190951(+)$1	243	112	115	8.9999
GAA	chr8:99837539-99837771(-)$1	232	34	37	8.9999
GAA	chr17:7082235-7082519(-)$1	284	20	23	8.9999
GAA	chr2:54856638-54856894(+)$1	256	3	6	8.9999
GAA	chr3:184044922-184045214(+)$1	292	56	59	8.9999
GAA	chrX:20154239-20154483(-)$1	244	14	17	8.9999
GAA	chr21:47611929-47612176(-)$1	247	14	17	8.9999
gaa	chr17:19093392-19093609(-)$1	217	94	97	8.9999
GAA	chr1:173835345-173835589(-)$1	244	28	31	8.9999
GAA	chr8:124381215-124381517(-)$1	302	19	22	8.9999
GAA	chr1:40041677-40041927(-)$1	250	21	24	8.9999
GAA	chr17:1665246-1665480(+)$1	234	23	26	8.9999
GAA	chr5:176516540-176516794(+)$1	254	10	13	8.9999
GAA	chr1:245018788-245019011(-)$1	223	13	16	8.9999
GAA	chr17:37617680-37617971(+)$1	291	130	133	8.9999
GAA	chr17:27050349-27050587(+)$1	238	66	69	8.9999
gaa	chr14:102550932-102551190(-)$1	258	13	16	8.9999
GAA	chr16:70696474-70696723(-)$1	249	57	60	8.9999
GAA	chr14:102452074-102452338(+)$1	264	2	5	8.9999
GAA	chr16:30087575-30087857(+)$1	282	192	195	8.9999
GAA	chr14:31604213-31604488(-)$1	275	86	89	8.9999
GAA	chr9:117050890-117051131(+)$1	241	121	124	8.9999
GAA	chr20:26189871-26190089(-)$1	218	137	140	8.9999
gaa	chr17:19091288-19091510(+)$1	222	83	86	8.9999
gaa	chr17:19093359-19093584(-)$1	225	69	72	8.9999
GAA	chr1:35652573-35652833(-)$1	260	19	22	8.9999
GAA	chr1:67880748-67881031(-)$1	283	18	21	8.9999
GAA	chr1:245021406-245021671(-)$1	265	44	47	8.9999
GAA	chr1:173834950-173835198(-)$1	248	14	17	8.9999
GAA	chr1:19474425-19474680(-)$1	255	63	66	8.9999
GAA	chr12:57567503-57567741(+)$1	238	126	129	8.9999
GAA	chr7:127341134-127341411(+)$1	277	3	6	8.9999
gaa	chr17:19093334-19093559(-)$1	225	44	47	8.9999
GAA	chr20:26189890-26190107(-)$1	217	155	158	8.9999
GAA	chr6:144812014-144812262(+)$1	248	21	24	8.9999
GAA	chr17:75484225-75484478(+)$1	253	106	109	8.9999
GAA	chr9:116994001-116994239(+)$1	238	132	135	8.9999
GAA	chr1:19523554-19523823(-)$1	269	16	19	8.9999
GAA	chr19:51856276-51856562(-)$1	286	84	87	8.9999
GAA	chr17:80007901-80008193(-)$1	292	5	8	8.9999
GAA	chr1:19487436-19487687(-)$1	251	13	16	8.9999
GAA	chr21:46915219-46915445(+)$1	226	66	69	8.9999
GAA	chr2:232326431-232326673(-)$1	242	46	49	8.9999
GAA	chr2:159313486-159313829(+)$1	343	240	243	8.9999
GAA	chr2:232319842-232320079(-)$1	237	155	158	8.9999
GAA	chr14:102551608-102551860(-)$1	252	55	58	8.9999
GAA	chr19:893455-893690(+)$1	235	15	18	8.9999
GAA	chr20:62371833-62372101(+)$1	268	202	205	8.9999
GAA	chr3:48456292-48456542(-)$1	250	185	188	8.9999
GAA	chr15:25330616-25330942(+)$1	326	120	123	8.9999
GAA	chr4:53578775-53579007(+)$1	232	59	62	8.9999
GAA	chr12:26985874-26986096(-)$1	222	46	49	8.9999
GAA	chr1:35652702-35652951(-)$1	249	24	27	8.9999
GAA	chr9:131451536-131451809(+)$1	273	89	92	8.9999
GAA	chr19:51857296-51857633(-)$1	337	79	82	8.9999
GAA	chr14:102548629-102548883(-)$1	254	15	18	8.9999
GAA	chr16:78247742-78247956(+)$1	214	143	146	8.9999
GAA	chrX:128645800-128646041(-)$1	241	38	41	8.9999
GAA	chr12:112756954-112757265(-)$1	311	17	20	8.9999
GAA	chr5:138661102-138661446(+)$1	344	17	20	8.9999
GAA	chr14:21546492-21546748(+)$1	256	6	9	8.9999
GAA	chr6:144745101-144745314(+)$1	213	23	26	8.9999
GAA	chr16:2820155-2820393(+)$1	238	157	160	8.9999
gaa	chr17:19091317-19091520(+)$1	203	54	57	8.9999
GAA	chr1:245019103-245019350(-)$1	247	15	18	8.9999
gaa	chr4:174253031-174253318(-)$1	287	3	6	8.9999
GAA	chr2:232326205-232326473(-)$1	268	14	17	8.9999
GAA	chr9:116931317-116931552(+)$1	235	70	73	8.9999
GAA	chr9:117014773-117015022(+)$1	249	224	227	8.9999
GAA	chr1:19487983-19488226(-)$1	243	126	129	8.9999
gaa	chr9:100777605-100777868(+)$1	263	45	48	8.9999
GAA	chr2:54849382-54849624(+)$1	242	72	75	8.9999
GAA	chr17:80193762-80194054(+)$1	292	104	107	8.9999
GAA	chr2:232325148-232325375(-)$1	227	111	114	8.9999
gaa	chr9:108328022-108328293(+)$1	271	5	8	8.9999
gaa	chr1:91123325-91123541(+)$1	216	24	27	8.9999
GAA	chr20:31022371-31022647(+)$1	276	197	200	8.9999
GAA	chr1:245027002-245027293(-)$1	291	10	13	8.9999
GAA	chr17:1585083-1585368(-)$1	285	6	9	8.9999
GAA	chr17:19015762-19016025(-)$1	263	5	8	8.9999
GAA	chr1:19474956-19475210(-)$1	254	50	53	8.9999
GAA	chr20:26189854-26190071(-)$1	217	119	122	8.9999
GAA	chr17:74557623-74557886(+)$1	263	2	5	8.9999
GAA	chr1:19483293-19483520(-)$1	227	23	26	8.9999
GAA	chr14:39648426-39648640(+)$1	214	2	5	8.9999
GAA	chr9:116930028-116930252(+)$1	224	133	136	8.9999
GAA	chr7:103276709-103276944(-)$1	235	96	99	8.9999
GAA	chr1:19484306-19484553(-)$1	247	1	4	8.9999
gaa	chr17:18965302-18965546(+)$1	244	4	7	8.9999
GAA	chr7:103629635-103629887(-)$1	252	32	35	8.9999
gaa	chr11:76594342-76594556(+)$1	214	54	57	8.9999
GAA	chr1:8926237-8926458(-)$1	221	29	32	8.9999
GAA	chr20:60913433-60913664(-)$1	231	43	46	8.9999
gaa	chr14:23792136-23792370(+)$1	234	1	4	8.9999
GAA	chr20:60905444-60905667(-)$1	223	90	93	8.9999
GAA	chr22:41545777-41546099(+)$1	322	16	19	8.9999
GAA	chr7:2403166-2403450(+)$1	284	11	14	8.9999
GAA	chr14:24113938-24114166(+)$1	228	105	108	8.9999

#otherMatches

#Struct PSSM
C::	chrX:53589712-53589973(-)$1	261	32	35	8.9999
bb2	chr17:80190708-80190951(+)$1	243	112	115	8.9999
+++	chr8:99837539-99837771(-)$1	232	34	37	8.9999
vvv	chr17:7082235-7082519(-)$1	284	20	23	8.9999
NNN	chr2:54856638-54856894(+)$1	256	3	6	8.9999
qqq	chr3:184044922-184045214(+)$1	292	56	59	8.9999
g[e	chrX:20154239-20154483(-)$1	244	14	17	8.9999
F{B	chr21:47611929-47612176(-)$1	247	14	17	8.9999
fff	chr17:19093392-19093609(-)$1	217	94	97	8.9999
ffp	chr1:173835345-173835589(-)$1	244	28	31	8.9999
eee	chr8:124381215-124381517(-)$1	302	19	22	8.9999
###	chr1:40041677-40041927(-)$1	250	21	24	8.9999
ooo	chr17:1665246-1665480(+)$1	234	23	26	8.9999
d::	chr5:176516540-176516794(+)$1	254	10	13	8.9999
a!!	chr1:245018788-245019011(-)$1	223	13	16	8.9999
hhh	chr17:37617680-37617971(+)$1	291	130	133	8.9999
:::	chr17:27050349-27050587(+)$1	238	66	69	8.9999
PPP	chr14:102550932-102551190(-)$1	258	13	16	8.9999
uuu	chr16:70696474-70696723(-)$1	249	57	60	8.9999
:::	chr14:102452074-102452338(+)$1	264	2	5	8.9999
d##	chr16:30087575-30087857(+)$1	282	192	195	8.9999
cce	chr14:31604213-31604488(-)$1	275	86	89	8.9999
f!!	chr9:117050890-117051131(+)$1	241	121	124	8.9999
dd]	chr20:26189871-26190089(-)$1	218	137	140	8.9999
fff	chr17:19091288-19091510(+)$1	222	83	86	8.9999
fff	chr17:19093359-19093584(-)$1	225	69	72	8.9999
EEE	chr1:35652573-35652833(-)$1	260	19	22	8.9999
e##	chr1:67880748-67881031(-)$1	283	18	21	8.9999
cce	chr1:245021406-245021671(-)$1	265	44	47	8.9999
::H	chr1:173834950-173835198(-)$1	248	14	17	8.9999
GGG	chr1:19474425-19474680(-)$1	255	63	66	8.9999
qqq	chr12:57567503-57567741(+)$1	238	126	129	8.9999
ddb	chr7:127341134-127341411(+)$1	277	3	6	8.9999
fff	chr17:19093334-19093559(-)$1	225	44	47	8.9999
dd]	chr20:26189890-26190107(-)$1	217	155	158	8.9999
iii	chr6:144812014-144812262(+)$1	248	21	24	8.9999
eee	chr17:75484225-75484478(+)$1	253	106	109	8.9999
ddd	chr9:116994001-116994239(+)$1	238	132	135	8.9999
DD{	chr1:19523554-19523823(-)$1	269	16	19	8.9999
ttt	chr19:51856276-51856562(-)$1	286	84	87	8.9999
MMM	chr17:80007901-80008193(-)$1	292	5	8	8.9999
:::	chr1:19487436-19487687(-)$1	251	13	16	8.9999
>>>	chr21:46915219-46915445(+)$1	226	66	69	8.9999
:::	chr2:232326431-232326673(-)$1	242	46	49	8.9999
qqq	chr2:159313486-159313829(+)$1	343	240	243	8.9999
^^^	chr2:232319842-232320079(-)$1	237	155	158	8.9999
gg[	chr14:102551608-102551860(-)$1	252	55	58	8.9999
FF:	chr19:893455-893690(+)$1	235	15	18	8.9999
+++	chr20:62371833-62372101(+)$1	268	202	205	8.9999
d!!	chr3:48456292-48456542(-)$1	250	185	188	8.9999
:::	chr15:25330616-25330942(+)$1	326	120	123	8.9999
dd]	chr4:53578775-53579007(+)$1	232	59	62	8.9999
FFF	chr12:26985874-26986096(-)$1	222	46	49	8.9999
HHH	chr1:35652702-35652951(-)$1	249	24	27	8.9999
qqq	chr9:131451536-131451809(+)$1	273	89	92	8.9999
KKE	chr19:51857296-51857633(-)$1	337	79	82	8.9999
iii	chr14:102548629-102548883(-)$1	254	15	18	8.9999
&&&	chr16:78247742-78247956(+)$1	214	143	146	8.9999
EEE	chrX:128645800-128646041(-)$1	241	38	41	8.9999
e[e	chr12:112756954-112757265(-)$1	311	17	20	8.9999
DDO	chr5:138661102-138661446(+)$1	344	17	20	8.9999
bmm	chr14:21546492-21546748(+)$1	256	6	9	8.9999
EKK	chr6:144745101-144745314(+)$1	213	23	26	8.9999
uuu	chr16:2820155-2820393(+)$1	238	157	160	8.9999
fff	chr17:19091317-19091520(+)$1	203	54	57	8.9999
:::	chr1:245019103-245019350(-)$1	247	15	18	8.9999
:::	chr4:174253031-174253318(-)$1	287	3	6	8.9999
:::	chr2:232326205-232326473(-)$1	268	14	17	8.9999
d""	chr9:116931317-116931552(+)$1	235	70	73	8.9999
bb:	chr9:117014773-117015022(+)$1	249	224	227	8.9999
ppp	chr1:19487983-19488226(-)$1	243	126	129	8.9999
bb6	chr9:100777605-100777868(+)$1	263	45	48	8.9999
EEE	chr2:54849382-54849624(+)$1	242	72	75	8.9999
CKK	chr17:80193762-80194054(+)$1	292	104	107	8.9999
b22	chr2:232325148-232325375(-)$1	227	111	114	8.9999
ELL	chr9:108328022-108328293(+)$1	271	5	8	8.9999
$ff	chr1:91123325-91123541(+)$1	216	24	27	8.9999
g::	chr20:31022371-31022647(+)$1	276	197	200	8.9999
CLL	chr1:245027002-245027293(-)$1	291	10	13	8.9999
DLL	chr17:1585083-1585368(-)$1	285	6	9	8.9999
ddp	chr17:19015762-19016025(-)$1	263	5	8	8.9999
ggg	chr1:19474956-19475210(-)$1	254	50	53	8.9999
dd]	chr20:26189854-26190071(-)$1	217	119	122	8.9999
CCC	chr17:74557623-74557886(+)$1	263	2	5	8.9999
CLL	chr1:19483293-19483520(-)$1	227	23	26	8.9999
:::	chr14:39648426-39648640(+)$1	214	2	5	8.9999
e::	chr9:116930028-116930252(+)$1	224	133	136	8.9999
hhh	chr7:103276709-103276944(-)$1	235	96	99	8.9999
eee	chr1:19484306-19484553(-)$1	247	1	4	8.9999
dd[	chr17:18965302-18965546(+)$1	244	4	7	8.9999
+++	chr7:103629635-103629887(-)$1	252	32	35	8.9999
d[c	chr11:76594342-76594556(+)$1	214	54	57	8.9999
bb[	chr1:8926237-8926458(-)$1	221	29	32	8.9999
eee	chr20:60913433-60913664(-)$1	231	43	46	8.9999
eee	chr14:23792136-23792370(+)$1	234	1	4	8.9999
eee	chr20:60905444-60905667(-)$1	223	90	93	8.9999
ee+	chr22:41545777-41546099(+)$1	322	16	19	8.9999
ppp	chr7:2403166-2403450(+)$1	284	11	14	8.9999
d33	chr14:24113938-24114166(+)$1	228	105	108	8.9999

#DB
(..	chrX:53589712-53589973(-)$1	1	32	35	8.9999
)).	chr17:80190708-80190951(+)$1	1	112	115	8.9999
...	chr8:99837539-99837771(-)$1	1	34	37	8.9999
...	chr17:7082235-7082519(-)$1	1	20	23	8.9999
...	chr2:54856638-54856894(+)$1	1	3	6	8.9999
...	chr3:184044922-184045214(+)$1	1	56	59	8.9999
(.(	chrX:20154239-20154483(-)$1	1	14	17	8.9999
(.(	chr21:47611929-47612176(-)$1	1	14	17	8.9999
)))	chr17:19093392-19093609(-)$1	1	94	97	8.9999
((.	chr1:173835345-173835589(-)$1	1	28	31	8.9999
(((	chr8:124381215-124381517(-)$1	1	19	22	8.9999
...	chr1:40041677-40041927(-)$1	1	21	24	8.9999
...	chr17:1665246-1665480(+)$1	1	23	26	8.9999
)..	chr5:176516540-176516794(+)$1	1	10	13	8.9999
(..	chr1:245018788-245019011(-)$1	1	13	16	8.9999
)))	chr17:37617680-37617971(+)$1	1	130	133	8.9999
...	chr17:27050349-27050587(+)$1	1	66	69	8.9999
...	chr14:102550932-102551190(-)$1	1	13	16	8.9999
...	chr16:70696474-70696723(-)$1	1	57	60	8.9999
...	chr14:102452074-102452338(+)$1	1	2	5	8.9999
(..	chr16:30087575-30087857(+)$1	1	192	195	8.9999
))(	chr14:31604213-31604488(-)$1	1	86	89	8.9999
(..	chr9:117050890-117051131(+)$1	1	121	124	8.9999
)).	chr20:26189871-26190089(-)$1	1	137	140	8.9999
)))	chr17:19091288-19091510(+)$1	1	83	86	8.9999
)))	chr17:19093359-19093584(-)$1	1	69	72	8.9999
(((	chr1:35652573-35652833(-)$1	1	19	22	8.9999
(..	chr1:67880748-67881031(-)$1	1	18	21	8.9999
)))	chr1:245021406-245021671(-)$1	1	44	47	8.9999
..(	chr1:173834950-173835198(-)$1	1	14	17	8.9999
(((	chr1:19474425-19474680(-)$1	1	63	66	8.9999
...	chr12:57567503-57567741(+)$1	1	126	129	8.9999
(((	chr7:127341134-127341411(+)$1	1	3	6	8.9999
)))	chr17:19093334-19093559(-)$1	1	44	47	8.9999
)).	chr20:26189890-26190107(-)$1	1	155	158	8.9999
(((	chr6:144812014-144812262(+)$1	1	21	24	8.9999
)))	chr17:75484225-75484478(+)$1	1	106	109	8.9999
)))	chr9:116994001-116994239(+)$1	1	132	135	8.9999
((.	chr1:19523554-19523823(-)$1	1	16	19	8.9999
...	chr19:51856276-51856562(-)$1	1	84	87	8.9999
...	chr17:80007901-80008193(-)$1	1	5	8	8.9999
...	chr1:19487436-19487687(-)$1	1	13	16	8.9999
...	chr21:46915219-46915445(+)$1	1	66	69	8.9999
...	chr2:232326431-232326673(-)$1	1	46	49	8.9999
...	chr2:159313486-159313829(+)$1	1	240	243	8.9999
...	chr2:232319842-232320079(-)$1	1	155	158	8.9999
((.	chr14:102551608-102551860(-)$1	1	55	58	8.9999
((.	chr19:893455-893690(+)$1	1	15	18	8.9999
...	chr20:62371833-62372101(+)$1	1	202	205	8.9999
(..	chr3:48456292-48456542(-)$1	1	185	188	8.9999
...	chr15:25330616-25330942(+)$1	1	120	123	8.9999
)).	chr4:53578775-53579007(+)$1	1	59	62	8.9999
(((	chr12:26985874-26986096(-)$1	1	46	49	8.9999
(((	chr1:35652702-35652951(-)$1	1	24	27	8.9999
...	chr9:131451536-131451809(+)$1	1	89	92	8.9999
..(	chr19:51857296-51857633(-)$1	1	79	82	8.9999
(((	chr14:102548629-102548883(-)$1	1	15	18	8.9999
...	chr16:78247742-78247956(+)$1	1	143	146	8.9999
(((	chrX:128645800-128646041(-)$1	1	38	41	8.9999
(.(	chr12:112756954-112757265(-)$1	1	17	20	8.9999
((.	chr5:138661102-138661446(+)$1	1	17	20	8.9999
(..	chr14:21546492-21546748(+)$1	1	6	9	8.9999
(..	chr6:144745101-144745314(+)$1	1	23	26	8.9999
...	chr16:2820155-2820393(+)$1	1	157	160	8.9999
)))	chr17:19091317-19091520(+)$1	1	54	57	8.9999
...	chr1:245019103-245019350(-)$1	1	15	18	8.9999
...	chr4:174253031-174253318(-)$1	1	3	6	8.9999
...	chr2:232326205-232326473(-)$1	1	14	17	8.9999
(..	chr9:116931317-116931552(+)$1	1	70	73	8.9999
)).	chr9:117014773-117015022(+)$1	1	224	227	8.9999
...	chr1:19487983-19488226(-)$1	1	126	129	8.9999
)).	chr9:100777605-100777868(+)$1	1	45	48	8.9999
(((	chr2:54849382-54849624(+)$1	1	72	75	8.9999
(..	chr17:80193762-80194054(+)$1	1	104	107	8.9999
)..	chr2:232325148-232325375(-)$1	1	111	114	8.9999
(..	chr9:108328022-108328293(+)$1	1	5	8	8.9999
.((	chr1:91123325-91123541(+)$1	1	24	27	8.9999
)..	chr20:31022371-31022647(+)$1	1	197	200	8.9999
(..	chr1:245027002-245027293(-)$1	1	10	13	8.9999
(..	chr17:1585083-1585368(-)$1	1	6	9	8.9999
((.	chr17:19015762-19016025(-)$1	1	5	8	8.9999
(((	chr1:19474956-19475210(-)$1	1	50	53	8.9999
)).	chr20:26189854-26190071(-)$1	1	119	122	8.9999
(((	chr17:74557623-74557886(+)$1	1	2	5	8.9999
(..	chr1:19483293-19483520(-)$1	1	23	26	8.9999
...	chr14:39648426-39648640(+)$1	1	2	5	8.9999
)..	chr9:116930028-116930252(+)$1	1	133	136	8.9999
(((	chr7:103276709-103276944(-)$1	1	96	99	8.9999
(((	chr1:19484306-19484553(-)$1	1	1	4	8.9999
((.	chr17:18965302-18965546(+)$1	1	4	7	8.9999
...	chr7:103629635-103629887(-)$1	1	32	35	8.9999
(.(	chr11:76594342-76594556(+)$1	1	54	57	8.9999
((.	chr1:8926237-8926458(-)$1	1	29	32	8.9999
(((	chr20:60913433-60913664(-)$1	1	43	46	8.9999
(((	chr14:23792136-23792370(+)$1	1	1	4	8.9999
)))	chr20:60905444-60905667(-)$1	1	90	93	8.9999
((.	chr22:41545777-41546099(+)$1	1	16	19	8.9999
...	chr7:2403166-2403450(+)$1	1	11	14	8.9999
)..	chr14:24113938-24114166(+)$1	1	105	108	8.9999

#PSSM
G : 0.86	g : 0.13	
A : 0.86	a : 0.13	
A : 0.86	a : 0.13	

#score	890.9999999999998
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_CDS_m3_run1.nuc.txt

#NT
UCUGUGU	chr2:186659248-186659494(-)$1	246	49	56	13.4000
UCUGUCU	chr7:44084334-44084641(+)$1	307	136	143	17.4000
UCUGUCU	chr7:141464309-141464553(+)$1	244	114	121	17.4000
UCUGUCU	chr22:51162458-51162748(+)$1	290	266	273	17.4000
ucugucu	chr3:11848721-11849008(-)$1	287	73	80	17.4000
UCUUUCU	chr3:99568704-99568988(+)$1	284	13	20	13.6000
UCUGUUU	chr3:99568521-99568758(+)$1	237	40	47	13.2000
UCUCUCU	chr3:99568176-99568417(+)$1	241	53	60	13.6000
UCUGUCC	chr17:55509822-55510161(+)$1	339	31	38	13.2000
UCUGUCC	chr12:57114082-57114361(-)$1	279	2	9	13.2000
UGUGUCU	chr19:45911825-45912096(-)$1	271	24	31	13.2000
UCUGUGU	chr2:242688146-242688438(+)$1	292	99	106	13.4000
UCUUUCU	chr17:26937537-26937901(-)$1	364	106	113	13.6000
UCAGUCU	chr17:44626328-44626575(-)$1	247	61	68	13.4000
UCAGUCU	chr7:141478434-141478713(+)$1	279	82	89	13.4000
UGUGUCU	chr3:99569369-99569631(+)$1	262	226	233	13.2000
UCUGACU	chr6:64451681-64451933(+)$1	252	43	50	13.2000
UCUGCCU	chr17:44408651-44408936(-)$1	285	16	23	13.2000
CCUGUCU	chr7:141464139-141464378(+)$1	239	120	127	12.8000
UCUGGCU	chr15:59191621-59191939(+)$1	318	138	145	13.2000
UCUGUCU	chr7:141464396-141464686(+)$1	290	27	34	17.4000
UCGGUCU	chr6:3259138-3259404(+)$1	266	25	32	13.2000
UCUGUCU	chr3:99569629-99569892(+)$1	263	115	122	17.4000
UCucucu	chr19:45912459-45912728(-)$1	269	212	219	13.6000

#otherMatches

#Struct PSSM
}DDDD||	chr3:99568245-99568495(+)$1	250	193	200	17.4000
++++++=	chr2:186659248-186659494(-)$1	246	49	56	13.4000
hhh]a]b	chr7:44084334-44084641(+)$1	307	136	143	17.4000
ZBB~~~~	chr7:141464309-141464553(+)$1	244	114	121	17.4000
qqqqqqq	chr22:51162458-51162748(+)$1	290	266	273	17.4000
22hhhhh	chr3:11848721-11849008(-)$1	287	73	80	17.4000
GPPPPPP	chr3:99568704-99568988(+)$1	284	13	20	13.6000
+++++++	chr3:99568521-99568758(+)$1	237	40	47	13.2000
ffff]bb	chr3:99568176-99568417(+)$1	241	53	60	13.6000
:::::::	chr17:55509822-55510161(+)$1	339	31	38	13.2000
dddd!!c	chr12:57114082-57114361(-)$1	279	2	9	13.2000
dd[eeee	chr19:45911825-45912096(-)$1	271	24	31	13.2000
:::ccc!	chr2:242688146-242688438(+)$1	292	99	106	13.4000
^^^^^^^	chr17:26937537-26937901(-)$1	364	106	113	13.6000
qqqbb::	chr17:44626328-44626575(-)$1	247	61	68	13.4000
[ccc[an	chr7:141478434-141478713(+)$1	279	82	89	13.4000
:EEEEE}	chr3:99569369-99569631(+)$1	262	226	233	13.2000
eeeeepp	chr6:64451681-64451933(+)$1	252	43	50	13.2000
GGGLLLB	chr17:44408651-44408936(-)$1	285	16	23	13.2000
ddooooo	chr7:141464139-141464378(+)$1	239	120	127	12.8000
eeeee::	chr15:59191621-59191939(+)$1	318	138	145	13.2000
dd55555	chr7:141464396-141464686(+)$1	290	27	34	17.4000
ffffffd	chr6:3259138-3259404(+)$1	266	25	32	13.2000
nnndddd	chr3:99569629-99569892(+)$1	263	115	122	17.4000
:::::::	chr19:45912459-45912728(-)$1	269	212	219	13.6000

#DB
.))))..	chr3:99568245-99568495(+)$1	1	193	200	17.4000
......(	chr2:186659248-186659494(-)$1	1	49	56	13.4000
))).).)	chr7:44084334-44084641(+)$1	1	136	143	17.4000
.))....	chr7:141464309-141464553(+)$1	1	114	121	17.4000
.......	chr22:51162458-51162748(+)$1	1	266	273	17.4000
..)))))	chr3:11848721-11849008(-)$1	1	73	80	17.4000
(......	chr3:99568704-99568988(+)$1	1	13	20	13.6000
.......	chr3:99568521-99568758(+)$1	1	40	47	13.2000
)))).))	chr3:99568176-99568417(+)$1	1	53	60	13.6000
.......	chr17:55509822-55510161(+)$1	1	31	38	13.2000
((((..(	chr12:57114082-57114361(-)$1	1	2	9	13.2000
((.((((	chr19:45911825-45912096(-)$1	1	24	31	13.2000
...(((.	chr2:242688146-242688438(+)$1	1	99	106	13.4000
.......	chr17:26937537-26937901(-)$1	1	106	113	13.6000
...))..	chr17:44626328-44626575(-)$1	1	61	68	13.4000
.(((.(.	chr7:141478434-141478713(+)$1	1	82	89	13.4000
.))))).	chr3:99569369-99569631(+)$1	1	226	233	13.2000
(((((..	chr6:64451681-64451933(+)$1	1	43	50	13.2000
(((...(	chr17:44408651-44408936(-)$1	1	16	23	13.2000
((.....	chr7:141464139-141464378(+)$1	1	120	127	12.8000
)))))..	chr15:59191621-59191939(+)$1	1	138	145	13.2000
)).....	chr7:141464396-141464686(+)$1	1	27	34	17.4000
))))))(	chr6:3259138-3259404(+)$1	1	25	32	13.2000
...))))	chr3:99569629-99569892(+)$1	1	115	122	17.4000
.......	chr19:45912459-45912728(-)$1	1	212	219	13.6000

#PSSM
U : 0.92	u : 0.04	C : 0.04	
C : 0.88	G : 0.08	c : 0.04	
U : 0.80	u : 0.08	A : 0.08	G : 0.04	
G : 0.80	U : 0.08	g : 0.04	C : 0.04	c : 0.04	
U : 0.80	u : 0.08	A : 0.04	C : 0.04	G : 0.04	
C : 0.80	G : 0.08	c : 0.08	U : 0.04	
U : 0.84	u : 0.08	C : 0.08	

#score	361.3999999999999
#seq	25
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_transcript_m2_run1.nuc.txt

#NT
UUCCUUU	chr12:66359763-66360074(+)$1	311	88	95	12.9354
UUCCUUU	chr6:33171782-33172016(+)$1	234	171	178	12.9354
UUUCUUG	chr1:47843756-47844018(+)$1	262	194	201	12.2096
UUCCUGG	chr11:47199021-47199300(-)$1	279	114	121	12.7741
GUCCUUG	chr20:2639134-2639392(-)$1	258	123	130	12.0483
UGCCUUG	chr1:55529779-55530036(+)$1	257	70	77	12.2903
UUCCUCG	chrX:132669889-132670118(-)$1	229	13	20	12.2096
UUUCUUG	chr19:39221000-39221226(+)$1	226	102	109	12.2096
UUCCCUG	chr19:12778943-12779244(-)$1	301	166	173	12.6935
UUCCUUG	chr14:70238515-70238770(+)$1	255	107	114	16.4032
UUCCUGG	chr16:2569923-2570193(+)$1	270	219	226	12.7741
UUACUUG	chr6:33385157-33385422(-)$1	265	125	132	12.2096
uugcuug	chr17:18965299-18965548(+)$1	249	54	61	12.0483
UUCUUUG	chr9:5785939-5786250(-)$1	311	20	27	12.4516
UGCCUUG	chr12:108962904-108963165(+)$1	261	142	149	12.2903
UUCCCUG	chr16:450424-450698(+)$1	274	21	28	12.6935
UUACUUG	chr7:94298473-94298703(+)$1	230	110	117	12.2096
UUCCAUG	chr11:68028741-68029020(-)$1	279	54	61	12.2096
GUCCUUG	chr22:41855753-41856009(-)$1	256	15	22	12.0483
UUCCUUC	chr1:8412520-8412836(-)$1	316	70	77	12.6935
UUCCGUG	chr8:145067170-145067426(+)$1	256	77	84	12.2096
UUCCUUG	chr9:124094914-124095172(+)$1	258	224	231	16.4032
UCCCUUG	chr11:1774089-1774359(-)$1	270	30	37	12.4516
uuccuuu	chr7:148700302-148700563(-)$1	261	14	21	12.9354
UUCCUUU	chr12:74934785-74935077(+)$1	292	47	54	12.9354
CUCCUUG	chr19:18731545-18731803(+)$1	258	8	15	11.9677
UUCUUUG	chr7:2704244-2704474(+)$1	230	83	90	12.4516
UUCCUGG	chr19:43011407-43011716(-)$1	309	179	186	12.7741
UUCCCUG	chr15:89442049-89442376(-)$1	327	48	55	12.6935
UUCCUGG	chr17:66528676-66528952(+)$1	276	44	51	12.7741
UCCCUUG	chr2:97525821-97526091(-)$1	270	114	121	12.4516
UUCCUUU	chrX:22012650-22012934(+)$1	284	90	97	12.9354
UUCCUUU	chr3:13358781-13359039(-)$1	258	68	75	12.9354
UUCCUUC	chr12:39687119-39687460(-)$1	341	55	62	12.6935
UUCCUUU	chr2:27422431-27422671(-)$1	240	148	155	12.9354
UUUCUUG	chr6:31321640-31321905(-)$1	265	45	52	12.2096
UUCCUGG	chr5:179263543-179263847(+)$1	304	245	252	12.7741
UUCGUUG	chr4:74286711-74286927(+)$1	216	158	165	12.0483
UUCCUUC	chr12:110811231-110811536(-)$1	305	72	79	12.6935
UUCCCUG	chr6:32796295-32796572(-)$1	277	143	150	12.6935
UUCCUGG	chr1:44443613-44443875(+)$1	262	114	121	12.7741
UUCCUUG	chr2:54896424-54896737(+)$1	313	156	163	16.4032
UUCUUUG	chr22:38202426-38202677(+)$1	251	122	129	12.4516
UUCCUGG	chr14:24686120-24686356(-)$1	236	178	185	12.7741
UUCCUUG	chr2:43450143-43450430(-)$1	287	82	89	16.4032
UUCCUUA	chr19:9940582-9940858(+)$1	276	36	43	12.4516
UUCUUUG	chr2:20401853-20402082(-)$1	229	85	92	12.4516
UUCUUUG	chr12:8071843-8072103(-)$1	260	241	248	12.4516
UUCCCUG	chr1:21069225-21069497(-)$1	272	5	12	12.6935
UUACUUG	chr12:124082364-124082631(+)$1	267	20	27	12.2096
UUCCUUC	chr1:26143149-26143424(+)$1	275	245	252	12.6935
UUCUUUG	chrX:152915922-152916138(+)$1	216	47	54	12.4516
UUCCCUG	chr16:30125470-30125733(-)$1	263	93	100	12.6935
UUCCUGG	chr19:47113686-47113934(+)$1	248	99	106	12.7741
CUCCUUG	chr16:88718311-88718572(-)$1	261	35	42	11.9677
UUCCCUG	chr19:17342696-17342967(-)$1	271	115	122	12.6935
UUCCUUG	chr15:44085950-44086291(+)$1	341	291	298	16.4032
UGCCUUG	chr1:19630414-19630715(-)$1	301	133	140	12.2903
UCCCUUG	chr14:24613084-24613319(-)$1	235	64	71	12.4516
UCCCUUG	chr12:109548041-109548377(+)$1	336	11	18	12.4516
GUCCUUG	chr17:7215408-7215642(+)$1	234	81	88	12.0483

#otherMatches

#Struct PSSM
dabb!!e	chr17:7215158-7215432(+)$1	274	155	162	12.4516
d4444==	chr12:66359763-66360074(+)$1	311	88	95	12.9354
:HHHHHH	chr6:33171782-33172016(+)$1	234	171	178	12.9354
gggg333	chr1:47843756-47844018(+)$1	262	194	201	12.2096
FFFFFff	chr11:47199021-47199300(-)$1	279	114	121	12.7741
b]bb]cc	chr20:2639134-2639392(-)$1	258	123	130	12.0483
ldddd:I	chr1:55529779-55530036(+)$1	257	70	77	12.2903
eeeeeoo	chrX:132669889-132670118(-)$1	229	13	20	12.2096
>>>>>>c	chr19:39221000-39221226(+)$1	226	102	109	12.2096
ZZZEEEE	chr19:12778943-12779244(-)$1	301	166	173	12.6935
:ddddmm	chr14:70238515-70238770(+)$1	255	107	114	16.4032
~~HHHHH	chr16:2569923-2570193(+)$1	270	219	226	12.7741
$$$dddd	chr6:33385157-33385422(-)$1	265	125	132	12.2096
JJJJJ{C	chr17:18965299-18965548(+)$1	249	54	61	12.0483
::fffff	chr9:5785939-5786250(-)$1	311	20	27	12.4516
HHHH{A{	chr12:108962904-108963165(+)$1	261	142	149	12.2903
::::AKK	chr16:450424-450698(+)$1	274	21	28	12.6935
dffffff	chr7:94298473-94298703(+)$1	230	110	117	12.2096
oooooee	chr11:68028741-68029020(-)$1	279	54	61	12.2096
:::AKKF	chr22:41855753-41856009(-)$1	256	15	22	12.0483
d22dddd	chr1:8412520-8412836(-)$1	316	70	77	12.6935
mmmcccc	chr8:145067170-145067426(+)$1	256	77	84	12.2096
"bb[ddd	chr9:124094914-124095172(+)$1	258	224	231	16.4032
ccclllc	chr11:1774089-1774359(-)$1	270	30	37	12.4516
rrdddd:	chr7:148700302-148700563(-)$1	261	14	21	12.9354
:::::::	chr12:74934785-74935077(+)$1	292	47	54	12.9354
nnbb:::	chr19:18731545-18731803(+)$1	258	8	15	11.9677
+++++hh	chr7:2704244-2704474(+)$1	230	83	90	12.4516
:::::cc	chr19:43011407-43011716(-)$1	309	179	186	12.7741
a]fffff	chr15:89442049-89442376(-)$1	327	48	55	12.6935
ccc!!dd	chr17:66528676-66528952(+)$1	276	44	51	12.7741
ccc!!dd	chr2:97525821-97526091(-)$1	270	114	121	12.4516
:ddddee	chrX:22012650-22012934(+)$1	284	90	97	12.9354
::bb###	chr3:13358781-13359039(-)$1	258	68	75	12.9354
FFFFF{B	chr12:39687119-39687460(-)$1	341	55	62	12.6935
===::::	chr2:27422431-27422671(-)$1	240	148	155	12.9354
iiiiioo	chr6:31321640-31321905(-)$1	265	45	52	12.2096
eee4444	chr5:179263543-179263847(+)$1	304	245	252	12.7741
eeeffff	chr4:74286711-74286927(+)$1	216	158	165	12.0483
qqqqqqq	chr12:110811231-110811536(-)$1	305	72	79	12.6935
44eeeee	chr6:32796295-32796572(-)$1	277	143	150	12.6935
22bb:ff	chr1:44443613-44443875(+)$1	262	114	121	12.7741
DDDDYYH	chr2:54896424-54896737(+)$1	313	156	163	16.4032
gggggg!	chr22:38202426-38202677(+)$1	251	122	129	12.4516
qffffff	chr14:24686120-24686356(-)$1	236	178	185	12.7741
i22iiii	chr2:43450143-43450430(-)$1	287	82	89	16.4032
GGG::::	chr19:9940582-9940858(+)$1	276	36	43	12.4516
>>>>>>>	chr2:20401853-20402082(-)$1	229	85	92	12.4516
FFF::::	chr12:8071843-8072103(-)$1	260	241	248	12.4516
EEEEE{B	chr1:21069225-21069497(-)$1	272	5	12	12.6935
iiii:::	chr12:124082364-124082631(+)$1	267	20	27	12.2096
IIIIIIZ	chr1:26143149-26143424(+)$1	275	245	252	12.6935
wwwwhhh	chrX:152915922-152916138(+)$1	216	47	54	12.4516
::::ddd	chr16:30125470-30125733(-)$1	263	93	100	12.6935
^^^^^^^	chr19:47113686-47113934(+)$1	248	99	106	12.7741
f[bbccc	chr16:88718311-88718572(-)$1	261	35	42	11.9677
d22eeee	chr19:17342696-17342967(-)$1	271	115	122	12.6935
:hhhhhh	chr15:44085950-44086291(+)$1	341	291	298	16.4032
nbb====	chr1:19630414-19630715(-)$1	301	133	140	12.2903
eeeeeee	chr14:24613084-24613319(-)$1	235	64	71	12.4516
=======	chr12:109548041-109548377(+)$1	336	11	18	12.4516
ccooooo	chr17:7215408-7215642(+)$1	234	81	88	12.0483

#DB
((((..(	chr17:7215158-7215432(+)$1	1	155	162	12.4516
)....))	chr12:66359763-66360074(+)$1	1	88	95	12.9354
.((((((	chr6:33171782-33172016(+)$1	1	171	178	12.9354
))))...	chr1:47843756-47844018(+)$1	1	194	201	12.2096
)))))((	chr11:47199021-47199300(-)$1	1	114	121	12.7741
).)).))	chr20:2639134-2639392(-)$1	1	123	130	12.0483
.)))).(	chr1:55529779-55530036(+)$1	1	70	77	12.2903
(((((..	chrX:132669889-132670118(-)$1	1	13	20	12.2096
......)	chr19:39221000-39221226(+)$1	1	102	109	12.2096
...))))	chr19:12778943-12779244(-)$1	1	166	173	12.6935
.((((..	chr14:70238515-70238770(+)$1	1	107	114	16.4032
..)))))	chr16:2569923-2570193(+)$1	1	219	226	12.7741
...((((	chr6:33385157-33385422(-)$1	1	125	132	12.2096
(((((.(	chr17:18965299-18965548(+)$1	1	54	61	12.0483
..(((((	chr9:5785939-5786250(-)$1	1	20	27	12.4516
((((.(.	chr12:108962904-108963165(+)$1	1	142	149	12.2903
....(..	chr16:450424-450698(+)$1	1	21	28	12.6935
)))))))	chr7:94298473-94298703(+)$1	1	110	117	12.2096
.....))	chr11:68028741-68029020(-)$1	1	54	61	12.2096
...(..(	chr22:41855753-41856009(-)$1	1	15	22	12.0483
)..))))	chr1:8412520-8412836(-)$1	1	70	77	12.6935
...))))	chr8:145067170-145067426(+)$1	1	77	84	12.2096
.((.(((	chr9:124094914-124095172(+)$1	1	224	231	16.4032
(((...)	chr11:1774089-1774359(-)$1	1	30	37	12.4516
..)))).	chr7:148700302-148700563(-)$1	1	14	21	12.9354
.......	chr12:74934785-74935077(+)$1	1	47	54	12.9354
..))...	chr19:18731545-18731803(+)$1	1	8	15	11.9677
.....((	chr7:2704244-2704474(+)$1	1	83	90	12.4516
.....((	chr19:43011407-43011716(-)$1	1	179	186	12.7741
).)))))	chr15:89442049-89442376(-)$1	1	48	55	12.6935
(((..((	chr17:66528676-66528952(+)$1	1	44	51	12.7741
(((..((	chr2:97525821-97526091(-)$1	1	114	121	12.4516
.((((((	chrX:22012650-22012934(+)$1	1	90	97	12.9354
..((...	chr3:13358781-13359039(-)$1	1	68	75	12.9354
(((((.(	chr12:39687119-39687460(-)$1	1	55	62	12.6935
)))....	chr2:27422431-27422671(-)$1	1	148	155	12.9354
(((((..	chr6:31321640-31321905(-)$1	1	45	52	12.2096
)))....	chr5:179263543-179263847(+)$1	1	245	252	12.7741
)))((((	chr4:74286711-74286927(+)$1	1	158	165	12.0483
.......	chr12:110811231-110811536(-)$1	1	72	79	12.6935
..)))))	chr6:32796295-32796572(-)$1	1	143	150	12.6935
..)).((	chr1:44443613-44443875(+)$1	1	114	121	12.7741
))))..)	chr2:54896424-54896737(+)$1	1	156	163	16.4032
((((((.	chr22:38202426-38202677(+)$1	1	122	129	12.4516
.))))))	chr14:24686120-24686356(-)$1	1	178	185	12.7741
)..))))	chr2:43450143-43450430(-)$1	1	82	89	16.4032
(((....	chr19:9940582-9940858(+)$1	1	36	43	12.4516
.......	chr2:20401853-20402082(-)$1	1	85	92	12.4516
)))....	chr12:8071843-8072103(-)$1	1	241	248	12.4516
(((((.(	chr1:21069225-21069497(-)$1	1	5	12	12.6935
))))...	chr12:124082364-124082631(+)$1	1	20	27	12.2096
)))))).	chr1:26143149-26143424(+)$1	1	245	252	12.6935
....)))	chrX:152915922-152916138(+)$1	1	47	54	12.4516
....(((	chr16:30125470-30125733(-)$1	1	93	100	12.6935
.......	chr19:47113686-47113934(+)$1	1	99	106	12.7741
(.(((((	chr16:88718311-88718572(-)$1	1	35	42	11.9677
)..))))	chr19:17342696-17342967(-)$1	1	115	122	12.6935
.((((((	chr15:44085950-44086291(+)$1	1	291	298	16.4032
.))((((	chr1:19630414-19630715(-)$1	1	133	140	12.2903
))))(((	chr14:24613084-24613319(-)$1	1	64	71	12.4516
(((((((	chr12:109548041-109548377(+)$1	1	11	18	12.4516
((.....	chr17:7215408-7215642(+)$1	1	81	88	12.0483

#PSSM
U : 0.88	G : 0.04	u : 0.03	C : 0.03	
U : 0.83	C : 0.08	G : 0.04	u : 0.03	
C : 0.87	U : 0.04	A : 0.04	g : 0.01	c : 0.01	
C : 0.85	U : 0.09	c : 0.03	G : 0.01	
U : 0.82	C : 0.11	u : 0.03	A : 0.01	G : 0.01	
U : 0.82	G : 0.12	u : 0.03	C : 0.01	
G : 0.79	U : 0.09	C : 0.06	g : 0.01	u : 0.01	A : 0.01	

#score	794.7419354838701
#seq	62
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_transcript_m1_run1.nuc.txt

#NT
GGAGGGAGG	chr9:137268595-137268880(+)$1	285	90	99	13.2037
GGGGUGAGC	chr18:13052816-13053057(+)$1	241	189	198	15.5185
GGGGUGUGG	chrX:153236504-153236764(-)$1	260	55	64	16.4444
GAGGUGAAG	chr3:127842363-127842690(-)$1	327	135	144	11.9999
GGGGCGAGG	chr12:56552049-56552288(+)$1	239	201	210	15.8888
GAGGUGAGG	chr12:123067170-123067422(+)$1	252	222	231	16.5370
UGGGUGGGG	chr19:1944580-1944813(+)$1	233	111	120	12.8333
agggugagg	chr16:85651895-85652143(+)$1	248	34	43	16.3518
AGAGUGAGG	chr4:1239457-1239770(-)$1	313	59	68	13.0185
GGGGUGAGG	chr7:157611776-157612111(-)$1	335	156	165	19.5925
AGUGUGAGG	chr8:141889492-141889759(-)$1	267	143	152	13.0185
GGUGUGAGC	chr15:28358661-28358911(-)$1	250	23	32	12.1851
ggggggaug	chr2:10309916-10310171(+)$1	255	1	10	12.1851
GGGGGGUGG	chr16:30075440-30075644(+)$1	204	11	20	13.3888
AGGGGGAGG	chr12:76953301-76953602(-)$1	301	3	12	13.2962
GAGGUGGGG	chr17:166801-167083(-)$1	282	19	28	13.4814
GGGGUGAGC	chr9:137256827-137257081(+)$1	254	128	137	15.5185
GGGGGGCGG	chr12:6715466-6715708(-)$1	242	4	13	12.9259
GGGGUGAGG	chr1:39916652-39916946(+)$1	294	234	243	19.5925
GGGGUGGGG	chr3:197243782-197244065(-)$1	283	4	13	16.5370
GUGGUGUGG	chr15:25327677-25327954(+)$1	277	58	67	12.9259
GGGGUCAGG	chr17:75463036-75463290(+)$1	254	3	12	14.7777
GCGGGGAGG	chr12:123998019-123998297(-)$1	278	65	74	12.9259
AGGGUGAGG	chr7:157567848-157568109(-)$1	261	65	74	16.3518
GAGGUGGGG	chr19:1415128-1415368(+)$1	240	89	98	13.4814
GGAGAGAGG	chr16:85658323-85658587(+)$1	264	23	32	12.8333
GUGGUGAGG	chr19:4037022-4037263(+)$1	241	223	232	16.0740
GGAGUGAGU	chr6:170709291-170709550(+)$1	259	6	15	12.1851
ugggugagg	chr16:88584193-88584464(+)$1	271	136	145	15.8888
GGGGUGGGG	chr3:184033077-184033354(+)$1	277	61	70	16.5370
GAGGUGAGG	chr16:15219448-15219688(-)$1	240	138	147	16.5370
AGGGUGAGA	chr2:118572291-118572548(+)$1	257	144	153	12.0925
AGGGUGAGU	chrX:128631790-128632009(-)$1	219	185	194	12.2777
GGGGUGAGG	chr19:1980524-1980771(+)$1	247	199	208	19.5925
ugggggagg	chr9:140610960-140611268(+)$1	308	9	18	12.8333
GUGGAGAGG	chr6:170706986-170707239(+)$1	253	124	133	12.6481
GGGGAGGGG	chrX:107683106-107683372(+)$1	266	38	47	13.1111
GGGGUGUUG	chr9:136845776-136846016(-)$1	240	82	91	12.0925
GGCGUGGGG	chr19:4035472-4035735(+)$1	263	97	106	13.0185
GAGAUGAGG	chr14:23564651-23564953(+)$1	302	7	16	12.0925
GAAGUGAGG	chr12:12333939-12334229(-)$1	290	17	26	13.2037
GGGGUGAGG	chr12:56708912-56709126(-)$1	214	24	33	19.5925
GGUGAGAGG	chr1:19487982-19488187(-)$1	205	104	113	12.8333
GGUGUGAGG	chr20:31050038-31050338(-)$1	300	48	57	16.2592
GGGAUGAGG	chr21:45371843-45372180(+)$1	337	149	158	15.1481
GGCGUGUGG	chrX:39955218-39955473(-)$1	255	36	45	12.9259
GGUGUGAGG	chr19:23507794-23508082(-)$1	288	225	234	16.2592
GGGCUGUGG	chr3:129281531-129281777(-)$1	246	11	20	11.9999
GGGGUGAGU	chr17:75211194-75211453(+)$1	259	14	23	15.5185
GGGCUGAGG	chr11:63953576-63953843(+)$1	267	182	191	15.1481
GGGGUGAUG	chr15:28421593-28421838(-)$1	245	108	117	15.2407
GGCGUGAGG	chr2:128848779-128849056(+)$1	277	222	231	16.0740
AAGGUGAGG	chr19:42793916-42794162(+)$1	246	184	193	13.2962

#otherMatches

#Struct PSSM
eeiiiiiii	chr12:123998097-123998362(-)$1	265	130	139	12.9259
hhhhhEEEE	chr9:137268595-137268880(+)$1	285	90	99	13.2037
miiiiiiii	chr18:13052816-13053057(+)$1	241	189	198	15.5185
ffffff]bb	chrX:153236504-153236764(-)$1	260	55	64	16.4444
hhhhhhh""	chr3:127842363-127842690(-)$1	327	135	144	11.9999
HHH}BB|||	chr12:56552049-56552288(+)$1	239	201	210	15.8888
HHHHHHHHC	chr12:123067170-123067422(+)$1	252	222	231	16.5370
ddeeeeeee	chr19:1944580-1944813(+)$1	233	111	120	12.8333
fffffDDDD	chr16:85651895-85652143(+)$1	248	34	43	16.3518
bb[bb[ccc	chr4:1239457-1239770(-)$1	313	59	68	13.0185
gdddd"""e	chr7:157611776-157612111(-)$1	335	156	165	19.5925
FFFFFF:bb	chr8:141889492-141889759(-)$1	267	143	152	13.0185
ggggg22gg	chr15:28358661-28358911(-)$1	250	23	32	12.1851
EEEEE{BBC	chr2:10309916-10310171(+)$1	255	1	10	12.1851
HHHHHHHFF	chr16:30075440-30075644(+)$1	204	11	20	13.3888
{EEEEE:gg	chr12:76953301-76953602(-)$1	301	3	12	13.2962
:::DDDD::	chr17:166801-167083(-)$1	282	19	28	13.4814
=====22cc	chr9:137256827-137257081(+)$1	254	128	137	15.5185
IIIIIIIII	chr12:6715466-6715708(-)$1	242	4	13	12.9259
333gggggg	chr1:39916652-39916946(+)$1	294	234	243	19.5925
GGGGGGGKK	chr3:197243782-197244065(-)$1	283	4	13	16.5370
cccpppppp	chr15:25327677-25327954(+)$1	277	58	67	12.9259
JJJJJJJJJ	chr17:75463036-75463290(+)$1	254	3	12	14.7777
gggggg[ee	chr12:123998019-123998297(-)$1	278	65	74	12.9259
ddccc[ddd	chr7:157567848-157568109(-)$1	261	65	74	16.3518
qqqqqqqqa	chr19:1415128-1415368(+)$1	240	89	98	13.4814
fqqqqqqqq	chr16:85658323-85658587(+)$1	264	23	32	12.8333
EEEZZZA}B	chr19:4037022-4037263(+)$1	241	223	232	16.0740
DDDD{BBFF	chr6:170709291-170709550(+)$1	259	6	15	12.1851
ooobb4444	chr16:88584193-88584464(+)$1	271	136	145	15.8888
JJJJJJJJJ	chr3:184033077-184033354(+)$1	277	61	70	16.5370
[bb[a[hhh	chr16:15219448-15219688(-)$1	240	138	147	16.5370
GGG}CCCii	chr2:118572291-118572548(+)$1	257	144	153	12.0925
sssseeeee	chrX:128631790-128632009(-)$1	219	185	194	12.2777
EEEEE}FFF	chr19:1980524-1980771(+)$1	247	199	208	19.5925
BBLLLCCCK	chr9:140610960-140611268(+)$1	308	9	18	12.8333
b]iiiiiii	chr6:170706986-170707239(+)$1	253	124	133	12.6481
[eeeee[==	chrX:107683106-107683372(+)$1	266	38	47	13.1111
CCdddd[==	chr9:136845776-136846016(-)$1	240	82	91	12.0925
dd[ffffff	chr19:4035472-4035735(+)$1	263	97	106	13.0185
DDDLLLCCC	chr14:23564651-23564953(+)$1	302	7	16	12.0925
:gggggggc	chr12:12333939-12334229(-)$1	290	17	26	13.2037
f22ccc:CC	chr12:56708912-56709126(-)$1	214	24	33	19.5925
ggg"""bb$	chr1:19487982-19488187(-)$1	205	104	113	12.8333
c[eeeeell	chr20:31050038-31050338(-)$1	300	48	57	16.2592
d####a!!g	chr21:45371843-45372180(+)$1	337	149	158	15.1481
{CCC{CCC{	chrX:39955218-39955473(-)$1	255	36	45	12.9259
#ffffff""	chr19:23507794-23508082(-)$1	288	225	234	16.2592
[dddd"""e	chr3:129281531-129281777(-)$1	246	11	20	11.9999
ddd[eeeee	chr17:75211194-75211453(+)$1	259	14	23	15.5185
]dddd333e	chr11:63953576-63953843(+)$1	267	182	191	15.1481
eeeeepppp	chr15:28421593-28421838(-)$1	245	108	117	15.2407
[bbccc!!c	chr2:128848779-128849056(+)$1	277	222	231	16.0740
DZZZBB}JJ	chr19:42793916-42794162(+)$1	246	184	193	13.2962

#DB
)))))))))	chr12:123998097-123998362(-)$1	1	130	139	12.9259
)))))((((	chr9:137268595-137268880(+)$1	1	90	99	13.2037
.))))))))	chr18:13052816-13053057(+)$1	1	189	198	15.5185
)))))).))	chrX:153236504-153236764(-)$1	1	55	64	16.4444
(((((((..	chr3:127842363-127842690(-)$1	1	135	144	11.9999
))).))...	chr12:56552049-56552288(+)$1	1	201	210	15.8888
)))))))))	chr12:123067170-123067422(+)$1	1	222	231	16.5370
(((((((((	chr19:1944580-1944813(+)$1	1	111	120	12.8333
)))))((((	chr16:85651895-85652143(+)$1	1	34	43	16.3518
((.((.(((	chr4:1239457-1239770(-)$1	1	59	68	13.0185
)((((...(	chr7:157611776-157612111(-)$1	1	156	165	19.5925
((((((.((	chr8:141889492-141889759(-)$1	1	143	152	13.0185
)))))..))	chr15:28358661-28358911(-)$1	1	23	32	12.1851
(((((.(((	chr2:10309916-10310171(+)$1	1	1	10	12.1851
(((((((((	chr16:30075440-30075644(+)$1	1	11	20	13.3888
.(((((.((	chr12:76953301-76953602(-)$1	1	3	12	13.2962
...((((..	chr17:166801-167083(-)$1	1	19	28	13.4814
)))))..))	chr9:137256827-137257081(+)$1	1	128	137	15.5185
(((((((((	chr12:6715466-6715708(-)$1	1	4	13	12.9259
...))))))	chr1:39916652-39916946(+)$1	1	234	243	19.5925
(((((((..	chr3:197243782-197244065(-)$1	1	4	13	16.5370
(((......	chr15:25327677-25327954(+)$1	1	58	67	12.9259
(((((((((	chr17:75463036-75463290(+)$1	1	3	12	14.7777
((((((.((	chr12:123998019-123998297(-)$1	1	65	74	12.9259
(((((.(((	chr7:157567848-157568109(-)$1	1	65	74	16.3518
........)	chr19:1415128-1415368(+)$1	1	89	98	13.4814
(........	chr16:85658323-85658587(+)$1	1	23	32	12.8333
)))...).)	chr19:4037022-4037263(+)$1	1	223	232	16.0740
((((.((((	chr6:170709291-170709550(+)$1	1	6	15	12.1851
...))....	chr16:88584193-88584464(+)$1	1	136	145	15.8888
(((((((((	chr3:184033077-184033354(+)$1	1	61	70	16.5370
.((.(.(((	chr16:15219448-15219688(-)$1	1	138	147	16.5370
))).)))((	chr2:118572291-118572548(+)$1	1	144	153	12.0925
....)))))	chrX:128631790-128632009(-)$1	1	185	194	12.2777
))))).)))	chr19:1980524-1980771(+)$1	1	199	208	19.5925
((...(((.	chr9:140610960-140611268(+)$1	1	9	18	12.8333
).)))))))	chr6:170706986-170707239(+)$1	1	124	133	12.6481
.(((((.((	chrX:107683106-107683372(+)$1	1	38	47	13.1111
((((((.((	chr9:136845776-136846016(-)$1	1	82	91	12.0925
((.((((((	chr19:4035472-4035735(+)$1	1	97	106	13.0185
(((...(((	chr14:23564651-23564953(+)$1	1	7	16	12.0925
.((((((((	chr12:12333939-12334229(-)$1	1	17	26	13.2037
)..))).((	chr12:56708912-56709126(-)$1	1	24	33	19.5925
(((...((.	chr1:19487982-19488187(-)$1	1	104	113	12.8333
(.(((((..	chr20:31050038-31050338(-)$1	1	48	57	16.2592
(....(..(	chr21:45371843-45372180(+)$1	1	149	158	15.1481
.(((.(((.	chrX:39955218-39955473(-)$1	1	36	45	12.9259
.((((((..	chr19:23507794-23508082(-)$1	1	225	234	16.2592
.((((...(	chr3:129281531-129281777(-)$1	1	11	20	11.9999
(((.(((((	chr17:75211194-75211453(+)$1	1	14	23	15.5185
.))))...)	chr11:63953576-63953843(+)$1	1	182	191	15.1481
(((((....	chr15:28421593-28421838(-)$1	1	108	117	15.2407
.(((((..(	chr2:128848779-128849056(+)$1	1	222	231	16.0740
)...)).))	chr19:42793916-42794162(+)$1	1	184	193	13.2962

#PSSM
G : 0.77	A : 0.12	u : 0.03	U : 0.01	a : 0.01	g : 0.01	
G : 0.68	A : 0.14	g : 0.07	U : 0.05	C : 0.03	
G : 0.68	A : 0.09	U : 0.09	g : 0.07	C : 0.05	
G : 0.85	g : 0.07	A : 0.03	C : 0.03	
U : 0.72	G : 0.11	A : 0.07	u : 0.03	g : 0.03	C : 0.01	
G : 0.90	g : 0.07	C : 0.01	
A : 0.66	G : 0.12	U : 0.11	a : 0.07	C : 0.01	
G : 0.87	g : 0.05	U : 0.03	A : 0.01	u : 0.01	
G : 0.79	g : 0.07	C : 0.05	U : 0.05	A : 0.01	

#score	780.2222222222215
#seq	54
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_UTR_m3_run1.nuc.txt

#NT
GGCUG	chr16:89789025-89789279(+)$1	254	76	81	15.0000
GGCUG	chr6:31795534-31795778(+)$1	244	72	77	15.0000
GGCUG	chr7:99091661-99091908(-)$1	247	229	234	15.0000
ggcug	chr4:68165-68411(+)$1	246	130	135	15.0000
GGCUG	chr1:109780428-109780639(+)$1	211	50	55	15.0000
GGCUG	chr15:63449495-63449761(-)$1	266	115	120	15.0000
GGCUG	chr9:139734808-139735066(+)$1	258	81	86	15.0000
GGCUG	chr16:29810504-29810743(+)$1	239	145	150	15.0000
GGCUG	chr5:36876983-36877219(+)$1	236	153	158	15.0000
GGCUG	chr12:8073744-8074019(-)$1	275	157	162	15.0000
GGCUG	chr2:201983436-201983728(+)$1	292	176	181	15.0000
GGCUG	chr17:40734000-40734259(-)$1	259	116	121	15.0000
GGCUG	chr7:91763546-91763779(-)$1	233	112	117	15.0000
GGCUG	chr7:66420439-66420688(+)$1	249	57	62	15.0000
GGCUG	chrX:77041491-77041762(-)$1	271	10	15	15.0000
GGCUG	chr15:82335848-82336101(-)$1	253	182	187	15.0000
GGCUG	chr19:10250845-10251121(-)$1	276	174	179	15.0000
GGCUG	chr14:21464845-21465100(+)$1	255	246	251	15.0000
GGCUG	chr7:140154185-140154427(-)$1	242	17	22	15.0000
GGCUG	chr10:74034898-74035142(+)$1	244	226	231	15.0000
GGCUG	chr1:227922625-227922948(-)$1	323	163	168	15.0000
GGCUG	chr1:228402495-228402797(+)$1	302	170	175	15.0000
GGCUG	chr13:95858796-95859074(-)$1	278	204	209	15.0000
GGCUG	chr12:112481505-112481772(-)$1	267	177	182	15.0000
GGCUG	chr22:32352319-32352564(+)$1	245	233	238	15.0000
GGCUG	chr16:89788888-89789147(+)$1	259	213	218	15.0000
GGCUG	chr3:119182165-119182428(-)$1	263	114	119	15.0000
GGCUG	chr3:152017159-152017432(+)$1	273	224	229	15.0000
GGCUG	chr7:12409410-12409689(-)$1	279	219	224	15.0000
GGCUG	chr4:128802051-128802359(+)$1	308	158	163	15.0000
GGCUG	chr12:57918646-57918900(+)$1	254	130	135	15.0000
GGCUG	chr19:18474488-18474773(+)$1	285	225	230	15.0000
GGCUG	chr1:27480637-27480904(-)$1	267	57	62	15.0000
GGCUG	chr1:236958829-236959045(+)$1	216	89	94	15.0000
GGCUG	chr14:37641526-37641804(-)$1	278	183	188	15.0000
GGCUG	chr11:3877234-3877496(+)$1	262	109	114	15.0000
ggcug	chr17:79603864-79604114(-)$1	250	4	9	15.0000
GGCUG	chr1:204518576-204518873(+)$1	297	167	172	15.0000
GGCUG	chr11:66384250-66384512(+)$1	262	201	206	15.0000
GGCUG	chr1:1249220-1249489(-)$1	269	29	34	15.0000
GGCUG	chr1:9673290-9673570(+)$1	280	26	31	15.0000
GGCUG	chr9:37120482-37120728(+)$1	246	210	215	15.0000
GGCUG	chr16:1706543-1706803(+)$1	260	32	37	15.0000
GGCUG	chr22:43289394-43289724(-)$1	330	61	66	15.0000
GGCUG	chr19:13264713-13264925(+)$1	212	94	99	15.0000
GGCUG	chr9:140099839-140100132(-)$1	293	128	133	15.0000
GGCUG	chr2:219140041-219140334(-)$1	293	189	194	15.0000
GGCUG	chr8:30891285-30891528(+)$1	243	168	173	15.0000

#otherMatches

#Struct PSSM
odddd	chr3:183702451-183702773(-)$1	322	271	276	15.0000
bb!!d	chr16:89789025-89789279(+)$1	254	76	81	15.0000
b[ddd	chr6:31795534-31795778(+)$1	244	72	77	15.0000
ggggg	chr7:99091661-99091908(-)$1	247	229	234	15.0000
eeee#	chr4:68165-68411(+)$1	246	130	135	15.0000
b[ccc	chr1:109780428-109780639(+)$1	211	50	55	15.0000
:IIII	chr15:63449495-63449761(-)$1	266	115	120	15.0000
{FFFF	chr9:139734808-139735066(+)$1	258	81	86	15.0000
beeee	chr16:29810504-29810743(+)$1	239	145	150	15.0000
22bb2	chr5:36876983-36877219(+)$1	236	153	158	15.0000
bb]dd	chr12:8073744-8074019(-)$1	275	157	162	15.0000
DDDDC	chr2:201983436-201983728(+)$1	292	176	181	15.0000
ffffm	chr17:40734000-40734259(-)$1	259	116	121	15.0000
iiioo	chr7:91763546-91763779(-)$1	233	112	117	15.0000
mmmmf	chr7:66420439-66420688(+)$1	249	57	62	15.0000
eeeee	chrX:77041491-77041762(-)$1	271	10	15	15.0000
bb]ff	chr15:82335848-82336101(-)$1	253	182	187	15.0000
bbqqq	chr19:10250845-10251121(-)$1	276	174	179	15.0000
FFFFF	chr14:21464845-21465100(+)$1	255	246	251	15.0000
qqqqc	chr7:140154185-140154427(-)$1	242	17	22	15.0000
IIIII	chr10:74034898-74035142(+)$1	244	226	231	15.0000
===22	chr1:227922625-227922948(-)$1	323	163	168	15.0000
dddd:	chr1:228402495-228402797(+)$1	302	170	175	15.0000
eee:E	chr13:95858796-95859074(-)$1	278	204	209	15.0000
hhhh"	chr12:112481505-112481772(-)$1	267	177	182	15.0000
ZZZEE	chr22:32352319-32352564(+)$1	245	233	238	15.0000
cc22d	chr16:89788888-89789147(+)$1	259	213	218	15.0000
hhhhh	chr3:119182165-119182428(-)$1	263	114	119	15.0000
JJJJJ	chr3:152017159-152017432(+)$1	273	224	229	15.0000
eeeee	chr7:12409410-12409689(-)$1	279	219	224	15.0000
}CCC}	chr4:128802051-128802359(+)$1	308	158	163	15.0000
ooggg	chr12:57918646-57918900(+)$1	254	130	135	15.0000
eeee:	chr19:18474488-18474773(+)$1	285	225	230	15.0000
cccdd	chr1:27480637-27480904(-)$1	267	57	62	15.0000
bb[ee	chr1:236958829-236959045(+)$1	216	89	94	15.0000
cc!!c	chr14:37641526-37641804(-)$1	278	183	188	15.0000
ee]cc	chr11:3877234-3877496(+)$1	262	109	114	15.0000
b[eee	chr17:79603864-79604114(-)$1	250	4	9	15.0000
cccff	chr1:204518576-204518873(+)$1	297	167	172	15.0000
DDDDC	chr11:66384250-66384512(+)$1	262	201	206	15.0000
lccc=	chr1:1249220-1249489(-)$1	269	29	34	15.0000
JJJJJ	chr1:9673290-9673570(+)$1	280	26	31	15.0000
=====	chr9:37120482-37120728(+)$1	246	210	215	15.0000
D{GGG	chr16:1706543-1706803(+)$1	260	32	37	15.0000
eeeee	chr22:43289394-43289724(-)$1	330	61	66	15.0000
ggggp	chr19:13264713-13264925(+)$1	212	94	99	15.0000
EEEE{	chr9:140099839-140100132(-)$1	293	128	133	15.0000
ee::D	chr2:219140041-219140334(-)$1	293	189	194	15.0000
eeee:	chr8:30891285-30891528(+)$1	243	168	173	15.0000

#DB
.))))	chr3:183702451-183702773(-)$1	1	271	276	15.0000
((..(	chr16:89789025-89789279(+)$1	1	76	81	15.0000
(.(((	chr6:31795534-31795778(+)$1	1	72	77	15.0000
)))))	chr7:99091661-99091908(-)$1	1	229	234	15.0000
((((.	chr4:68165-68411(+)$1	1	130	135	15.0000
(.(((	chr1:109780428-109780639(+)$1	1	50	55	15.0000
.))))	chr15:63449495-63449761(-)$1	1	115	120	15.0000
.((((	chr9:139734808-139735066(+)$1	1	81	86	15.0000
(((((	chr16:29810504-29810743(+)$1	1	145	150	15.0000
..)).	chr5:36876983-36877219(+)$1	1	153	158	15.0000
)).))	chr12:8073744-8074019(-)$1	1	157	162	15.0000
)))))	chr2:201983436-201983728(+)$1	1	176	181	15.0000
((((.	chr17:40734000-40734259(-)$1	1	116	121	15.0000
(((..	chr7:91763546-91763779(-)$1	1	112	117	15.0000
....)	chr7:66420439-66420688(+)$1	1	57	62	15.0000
)))))	chrX:77041491-77041762(-)$1	1	10	15	15.0000
)).))	chr15:82335848-82336101(-)$1	1	182	187	15.0000
((...	chr19:10250845-10251121(-)$1	1	174	179	15.0000
)))))	chr14:21464845-21465100(+)$1	1	246	251	15.0000
....)	chr7:140154185-140154427(-)$1	1	17	22	15.0000
)))))	chr10:74034898-74035142(+)$1	1	226	231	15.0000
)))..	chr1:227922625-227922948(-)$1	1	163	168	15.0000
)))).	chr1:228402495-228402797(+)$1	1	170	175	15.0000
))).)	chr13:95858796-95859074(-)$1	1	204	209	15.0000
((((.	chr12:112481505-112481772(-)$1	1	177	182	15.0000
...))	chr22:32352319-32352564(+)$1	1	233	238	15.0000
))..)	chr16:89788888-89789147(+)$1	1	213	218	15.0000
)))))	chr3:119182165-119182428(-)$1	1	114	119	15.0000
)))))	chr3:152017159-152017432(+)$1	1	224	229	15.0000
)))))	chr7:12409410-12409689(-)$1	1	219	224	15.0000
.))).	chr4:128802051-128802359(+)$1	1	158	163	15.0000
..)))	chr12:57918646-57918900(+)$1	1	130	135	15.0000
)))).	chr19:18474488-18474773(+)$1	1	225	230	15.0000
)))))	chr1:27480637-27480904(-)$1	1	57	62	15.0000
((.((	chr1:236958829-236959045(+)$1	1	89	94	15.0000
((..(	chr14:37641526-37641804(-)$1	1	183	188	15.0000
)).))	chr11:3877234-3877496(+)$1	1	109	114	15.0000
(.(((	chr17:79603864-79604114(-)$1	1	4	9	15.0000
)))((	chr1:204518576-204518873(+)$1	1	167	172	15.0000
)))))	chr11:66384250-66384512(+)$1	1	201	206	15.0000
.)))(	chr1:1249220-1249489(-)$1	1	29	34	15.0000
(((((	chr1:9673290-9673570(+)$1	1	26	31	15.0000
)))))	chr9:37120482-37120728(+)$1	1	210	215	15.0000
(.(((	chr16:1706543-1706803(+)$1	1	32	37	15.0000
)))))	chr22:43289394-43289724(-)$1	1	61	66	15.0000
((((.	chr19:13264713-13264925(+)$1	1	94	99	15.0000
((((.	chr9:140099839-140100132(-)$1	1	128	133	15.0000
))..)	chr2:219140041-219140334(-)$1	1	189	194	15.0000
)))).	chr8:30891285-30891528(+)$1	1	168	173	15.0000

#PSSM
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	

#score	735.0000000000001
#seq	49
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_CDS_m2_run2.nuc.txt

#NT
AAAG	chr11:62287577-62287784(-)$1	207	7	11	12.0000
AAAG	chr3:37366018-37366240(+)$1	222	47	51	12.0000
AAAG	chr3:37366040-37366267(+)$1	227	25	29	12.0000
AAAG	chr2:201435919-201436213(+)$1	294	117	121	12.0000
AAAG	chr8:30704754-30705012(-)$1	258	32	36	12.0000
AAAG	chr1:40702857-40703137(+)$1	280	18	22	12.0000
AAAG	chr11:62286809-62287043(-)$1	234	108	112	12.0000
AAAG	chr15:40915618-40915916(+)$1	298	25	29	12.0000
AAAG	chr15:40914895-40915219(+)$1	324	10	14	12.0000
AAAG	chr3:47951800-47952136(-)$1	336	307	311	12.0000
AAAG	chr15:40913089-40913334(+)$1	245	31	35	12.0000
AAAG	chr18:19153519-19153826(-)$1	307	7	11	12.0000
AAAG	chr22:42608877-42609165(-)$1	288	49	53	12.0000
AAAG	chr1:197070307-197070564(-)$1	257	89	93	12.0000
AAAG	chr3:37365743-37365981(+)$1	238	76	80	12.0000
AAAG	chr11:62285870-62286126(-)$1	256	77	81	12.0000
AAAG	chr13:23910341-23910676(-)$1	335	84	88	12.0000
AAAG	chr11:62294267-62294493(-)$1	226	81	85	12.0000
AAAG	chr6:87965684-87965973(+)$1	289	108	112	12.0000
AAAG	chr2:152321652-152321887(+)$1	235	19	23	12.0000
AAAG	chr17:41245151-41245403(-)$1	252	10	14	12.0000
AAAG	chr11:62292324-62292588(-)$1	264	0	4	12.0000
AAAG	chr3:15084401-15084659(-)$1	258	251	255	12.0000
AAAG	chr15:40914836-40915095(+)$1	259	35	39	12.0000
AAAG	chr1:214815307-214815581(+)$1	274	50	54	12.0000
AAAG	chr2:101624358-101624656(+)$1	298	44	48	12.0000
AAAG	chr1:214813641-214813914(+)$1	273	9	13	12.0000
AAAG	chr2:109380767-109381073(+)$1	306	143	147	12.0000
AAAG	chr1:46072982-46073241(+)$1	259	60	64	12.0000
AAAG	chr19:40542049-40542340(-)$1	291	160	164	12.0000
AAAG	chr6:87964737-87964994(+)$1	257	50	54	12.0000
AAAG	chr1:214818463-214818805(+)$1	342	180	184	12.0000
AAAG	chr1:214819573-214819834(+)$1	261	49	53	12.0000
AAAG	chr18:9255370-9255620(+)$1	250	85	89	12.0000
AAAG	chr18:9256408-9256647(+)$1	239	37	41	12.0000
AAAG	chr11:5510007-5510292(-)$1	285	65	69	12.0000
AAAG	chr13:23910509-23910751(-)$1	242	50	54	12.0000
AAAG	chr1:203768330-203768590(+)$1	260	39	43	12.0000
AAAG	chr1:197071854-197072091(-)$1	237	80	84	12.0000
AAAG	chr11:62285422-62285673(-)$1	251	111	115	12.0000
AAAG	chr8:53568589-53568847(-)$1	258	30	34	12.0000
AAAG	chr3:47952356-47952662(-)$1	306	123	127	12.0000
AAAG	chr8:30702906-30703165(-)$1	259	59	63	12.0000
AAAG	chr17:41243693-41243933(-)$1	240	82	86	12.0000
AAAG	chr3:37365781-37366015(+)$1	234	38	42	12.0000
AAAG	chr13:23910607-23910870(-)$1	263	84	88	12.0000
AAAG	chr6:87967056-87967333(+)$1	277	93	97	12.0000
AAAG	chr11:5424061-5424366(-)$1	305	104	108	12.0000
aaag	chr14:58755415-58755750(-)$1	335	146	150	12.0000
AAAG	chr1:39800072-39800355(+)$1	283	153	157	12.0000
AAAG	chr1:203767363-203767612(+)$1	249	14	18	12.0000
AAAG	chr1:203766802-203767104(+)$1	302	7	11	12.0000
AAAG	chr12:32134681-32134938(+)$1	257	31	35	12.0000
AAAG	chr4:13604157-13604420(-)$1	263	36	40	12.0000
AAAG	chr3:47165076-47165349(-)$1	273	261	265	12.0000
AAAG	chr17:41245941-41246199(-)$1	258	157	161	12.0000
AAAG	chr19:52090318-52090581(+)$1	263	22	26	12.0000
AAAG	chr15:77473391-77473730(-)$1	339	27	31	12.0000
AAAG	chr11:62295121-62295400(-)$1	279	6	10	12.0000
AAAG	chr13:23911786-23912097(-)$1	311	11	15	12.0000
AAAG	chr11:62297232-62297514(-)$1	282	6	10	12.0000
AAAG	chr12:32137918-32138253(+)$1	335	0	4	12.0000
AAAG	chr1:214814996-214815281(+)$1	285	68	72	12.0000
AAAG	chr18:19154036-19154308(-)$1	272	35	39	12.0000
AAAG	chr3:47951064-47951376(-)$1	312	53	57	12.0000
AAAG	chr3:37368304-37368561(+)$1	257	56	60	12.0000
AAAG	chr2:109381586-109381827(+)$1	241	6	10	12.0000
AAAG	chr13:23912167-23912483(-)$1	316	157	161	12.0000
aaag	chr18:9255272-9255515(+)$1	243	39	43	12.0000
AAAG	chr5:180278028-180278349(-)$1	321	16	20	12.0000
AAAG	chr2:55252967-55253226(-)$1	259	10	14	12.0000
AAAG	chr7:152345943-152346213(-)$1	270	44	48	12.0000
AAAG	chr15:40915353-40915658(+)$1	305	6	10	12.0000
AAAG	chr1:39876888-39877158(+)$1	270	5	9	12.0000
AAAG	chr11:62284815-62285090(-)$1	275	67	71	12.0000
AAAG	chr3:47163437-47163693(-)$1	256	237	241	12.0000
AAAG	chr1:67724667-67724962(+)$1	295	106	110	12.0000
AAAG	chr1:39800027-39800260(+)$1	233	30	34	12.0000
AAAG	chr1:214815853-214816082(+)$1	229	19	23	12.0000
AAAG	chr13:23905132-23905408(-)$1	276	25	29	12.0000
AAAG	chr1:214815512-214815823(+)$1	311	107	111	12.0000
AAAG	chr1:40704096-40704363(+)$1	267	18	22	12.0000
AAAG	chr1:39876818-39877088(+)$1	270	75	79	12.0000
AAAG	chr4:13602016-13602281(-)$1	265	169	173	12.0000
AAAG	chr3:37367775-37368027(+)$1	252	14	18	12.0000
AAAG	chr2:109384010-109384316(+)$1	306	227	231	12.0000
AAAG	chr3:47952752-47953022(-)$1	270	10	14	12.0000
AAAG	chr11:62284566-62284781(-)$1	215	16	20	12.0000
AAAG	chr13:23913375-23913631(-)$1	256	51	55	12.0000
AAAG	chr1:39877956-39878284(+)$1	328	34	38	12.0000
AAAG	chr1:214819634-214819916(+)$1	282	4	8	12.0000
AAAG	chr6:111694126-111694442(-)$1	316	234	238	12.0000
AAAG	chr11:62284890-62285145(-)$1	255	27	31	12.0000
AAAG	chr1:91405524-91405769(-)$1	245	22	26	12.0000
AAAG	chr11:62296941-62297186(-)$1	245	62	66	12.0000
AAAG	chr1:91406347-91406603(-)$1	256	26	30	12.0000
AAAG	chr11:5443515-5443781(-)$1	266	18	22	12.0000

#otherMatches

#Struct PSSM
::::	chr15:40913962-40914228(+)$1	266	45	49	12.0000
:::F	chr11:62287577-62287784(-)$1	207	7	11	12.0000
eeee	chr3:37366018-37366240(+)$1	222	47	51	12.0000
b555	chr3:37366040-37366267(+)$1	227	25	29	12.0000
::dd	chr2:201435919-201436213(+)$1	294	117	121	12.0000
ee:G	chr8:30704754-30705012(-)$1	258	32	36	12.0000
::::	chr1:40702857-40703137(+)$1	280	18	22	12.0000
nnnh	chr11:62286809-62287043(-)$1	234	108	112	12.0000
6666	chr15:40915618-40915916(+)$1	298	25	29	12.0000
qqqd	chr15:40914895-40915219(+)$1	324	10	14	12.0000
qqqb	chr3:47951800-47952136(-)$1	336	307	311	12.0000
wwww	chr15:40913089-40913334(+)$1	245	31	35	12.0000
EEEE	chr18:19153519-19153826(-)$1	307	7	11	12.0000
###e	chr22:42608877-42609165(-)$1	288	49	53	12.0000
JJJJ	chr1:197070307-197070564(-)$1	257	89	93	12.0000
qqqb	chr3:37365743-37365981(+)$1	238	76	80	12.0000
xxxx	chr11:62285870-62286126(-)$1	256	77	81	12.0000
::::	chr13:23910341-23910676(-)$1	335	84	88	12.0000
^^^^	chr11:62294267-62294493(-)$1	226	81	85	12.0000
c::D	chr6:87965684-87965973(+)$1	289	108	112	12.0000
zzzz	chr2:152321652-152321887(+)$1	235	19	23	12.0000
::::	chr17:41245151-41245403(-)$1	252	10	14	12.0000
:FFF	chr11:62292324-62292588(-)$1	264	0	4	12.0000
::::	chr3:15084401-15084659(-)$1	258	251	255	12.0000
444d	chr15:40914836-40915095(+)$1	259	35	39	12.0000
ssss	chr1:214815307-214815581(+)$1	274	50	54	12.0000
::dd	chr2:101624358-101624656(+)$1	298	44	48	12.0000
::::	chr1:214813641-214813914(+)$1	273	9	13	12.0000
eeee	chr2:109380767-109381073(+)$1	306	143	147	12.0000
::::	chr1:46072982-46073241(+)$1	259	60	64	12.0000
:ccc	chr19:40542049-40542340(-)$1	291	160	164	12.0000
::::	chr6:87964737-87964994(+)$1	257	50	54	12.0000
66dd	chr1:214818463-214818805(+)$1	342	180	184	12.0000
####	chr1:214819573-214819834(+)$1	261	49	53	12.0000
555c	chr18:9255370-9255620(+)$1	250	85	89	12.0000
mmmc	chr18:9256408-9256647(+)$1	239	37	41	12.0000
oooc	chr11:5510007-5510292(-)$1	285	65	69	12.0000
::::	chr13:23910509-23910751(-)$1	242	50	54	12.0000
++++	chr1:203768330-203768590(+)$1	260	39	43	12.0000
dddd	chr1:197071854-197072091(-)$1	237	80	84	12.0000
999=	chr11:62285422-62285673(-)$1	251	111	115	12.0000
::::	chr8:53568589-53568847(-)$1	258	30	34	12.0000
###b	chr3:47952356-47952662(-)$1	306	123	127	12.0000
::::	chr8:30702906-30703165(-)$1	259	59	63	12.0000
LLLC	chr17:41243693-41243933(-)$1	240	82	86	12.0000
qqqb	chr3:37365781-37366015(+)$1	234	38	42	12.0000
b]cc	chr13:23910607-23910870(-)$1	263	84	88	12.0000
ff!!	chr6:87967056-87967333(+)$1	277	93	97	12.0000
b:::	chr11:5424061-5424366(-)$1	305	104	108	12.0000
::::	chr14:58755415-58755750(-)$1	335	146	150	12.0000
::ff	chr1:39800072-39800355(+)$1	283	153	157	12.0000
:::b	chr1:203767363-203767612(+)$1	249	14	18	12.0000
::bb	chr1:203766802-203767104(+)$1	302	7	11	12.0000
::::	chr12:32134681-32134938(+)$1	257	31	35	12.0000
++++	chr4:13604157-13604420(-)$1	263	36	40	12.0000
ffFF	chr3:47165076-47165349(-)$1	273	261	265	12.0000
wwww	chr17:41245941-41246199(-)$1	258	157	161	12.0000
g!!b	chr19:52090318-52090581(+)$1	263	22	26	12.0000
::::	chr15:77473391-77473730(-)$1	339	27	31	12.0000
CKKF	chr11:62295121-62295400(-)$1	279	6	10	12.0000
oobb	chr13:23911786-23912097(-)$1	311	11	15	12.0000
::::	chr11:62297232-62297514(-)$1	282	6	10	12.0000
:::b	chr12:32137918-32138253(+)$1	335	0	4	12.0000
HHHc	chr1:214814996-214815281(+)$1	285	68	72	12.0000
::A{	chr18:19154036-19154308(-)$1	272	35	39	12.0000
::cc	chr3:47951064-47951376(-)$1	312	53	57	12.0000
d333	chr3:37368304-37368561(+)$1	257	56	60	12.0000
:::I	chr2:109381586-109381827(+)$1	241	6	10	12.0000
dddd	chr13:23912167-23912483(-)$1	316	157	161	12.0000
ddd"	chr18:9255272-9255515(+)$1	243	39	43	12.0000
::::	chr5:180278028-180278349(-)$1	321	16	20	12.0000
NNEE	chr2:55252967-55253226(-)$1	259	10	14	12.0000
ccco	chr7:152345943-152346213(-)$1	270	44	48	12.0000
GGGc	chr15:40915353-40915658(+)$1	305	6	10	12.0000
"""d	chr1:39876888-39877158(+)$1	270	5	9	12.0000
EKKC	chr11:62284815-62285090(-)$1	275	67	71	12.0000
rrrf	chr3:47163437-47163693(-)$1	256	237	241	12.0000
ddd[	chr1:67724667-67724962(+)$1	295	106	110	12.0000
::FF	chr1:39800027-39800260(+)$1	233	30	34	12.0000
::::	chr1:214815853-214816082(+)$1	229	19	23	12.0000
FFFF	chr13:23905132-23905408(-)$1	276	25	29	12.0000
%%%%	chr1:214815512-214815823(+)$1	311	107	111	12.0000
mmgg	chr1:40704096-40704363(+)$1	267	18	22	12.0000
"""d	chr1:39876818-39877088(+)$1	270	75	79	12.0000
22bb	chr4:13602016-13602281(-)$1	265	169	173	12.0000
dd::	chr3:37367775-37368027(+)$1	252	14	18	12.0000
///E	chr2:109384010-109384316(+)$1	306	227	231	12.0000
::::	chr3:47952752-47953022(-)$1	270	10	14	12.0000
nncc	chr11:62284566-62284781(-)$1	215	16	20	12.0000
++++	chr13:23913375-23913631(-)$1	256	51	55	12.0000
JDDD	chr1:39877956-39878284(+)$1	328	34	38	12.0000
LLLE	chr1:214819634-214819916(+)$1	282	4	8	12.0000
eooo	chr6:111694126-111694442(-)$1	316	234	238	12.0000
HMMM	chr11:62284890-62285145(-)$1	255	27	31	12.0000
mccc	chr1:91405524-91405769(-)$1	245	22	26	12.0000
pccc	chr11:62296941-62297186(-)$1	245	62	66	12.0000
"""d	chr1:91406347-91406603(-)$1	256	26	30	12.0000
::::	chr11:5443515-5443781(-)$1	266	18	22	12.0000

#DB
....	chr15:40913962-40914228(+)$1	1	45	49	12.0000
...(	chr11:62287577-62287784(-)$1	1	7	11	12.0000
))))	chr3:37366018-37366240(+)$1	1	47	51	12.0000
)...	chr3:37366040-37366267(+)$1	1	25	29	12.0000
..((	chr2:201435919-201436213(+)$1	1	117	121	12.0000
)).(	chr8:30704754-30705012(-)$1	1	32	36	12.0000
....	chr1:40702857-40703137(+)$1	1	18	22	12.0000
...)	chr11:62286809-62287043(-)$1	1	108	112	12.0000
....	chr15:40915618-40915916(+)$1	1	25	29	12.0000
...)	chr15:40914895-40915219(+)$1	1	10	14	12.0000
...)	chr3:47951800-47952136(-)$1	1	307	311	12.0000
....	chr15:40913089-40913334(+)$1	1	31	35	12.0000
((((	chr18:19153519-19153826(-)$1	1	7	11	12.0000
...(	chr22:42608877-42609165(-)$1	1	49	53	12.0000
((((	chr1:197070307-197070564(-)$1	1	89	93	12.0000
...)	chr3:37365743-37365981(+)$1	1	76	80	12.0000
....	chr11:62285870-62286126(-)$1	1	77	81	12.0000
....	chr13:23910341-23910676(-)$1	1	84	88	12.0000
....	chr11:62294267-62294493(-)$1	1	81	85	12.0000
)..(	chr6:87965684-87965973(+)$1	1	108	112	12.0000
....	chr2:152321652-152321887(+)$1	1	19	23	12.0000
....	chr17:41245151-41245403(-)$1	1	10	14	12.0000
.(((	chr11:62292324-62292588(-)$1	1	0	4	12.0000
....	chr3:15084401-15084659(-)$1	1	251	255	12.0000
...)	chr15:40914836-40915095(+)$1	1	35	39	12.0000
....	chr1:214815307-214815581(+)$1	1	50	54	12.0000
..((	chr2:101624358-101624656(+)$1	1	44	48	12.0000
....	chr1:214813641-214813914(+)$1	1	9	13	12.0000
))))	chr2:109380767-109381073(+)$1	1	143	147	12.0000
....	chr1:46072982-46073241(+)$1	1	60	64	12.0000
.(((	chr19:40542049-40542340(-)$1	1	160	164	12.0000
....	chr6:87964737-87964994(+)$1	1	50	54	12.0000
..))	chr1:214818463-214818805(+)$1	1	180	184	12.0000
....	chr1:214819573-214819834(+)$1	1	49	53	12.0000
...)	chr18:9255370-9255620(+)$1	1	85	89	12.0000
...)	chr18:9256408-9256647(+)$1	1	37	41	12.0000
...)	chr11:5510007-5510292(-)$1	1	65	69	12.0000
....	chr13:23910509-23910751(-)$1	1	50	54	12.0000
....	chr1:203768330-203768590(+)$1	1	39	43	12.0000
))))	chr1:197071854-197072091(-)$1	1	80	84	12.0000
...)	chr11:62285422-62285673(-)$1	1	111	115	12.0000
....	chr8:53568589-53568847(-)$1	1	30	34	12.0000
...(	chr3:47952356-47952662(-)$1	1	123	127	12.0000
....	chr8:30702906-30703165(-)$1	1	59	63	12.0000
...(	chr17:41243693-41243933(-)$1	1	82	86	12.0000
...)	chr3:37365781-37366015(+)$1	1	38	42	12.0000
).))	chr13:23910607-23910870(-)$1	1	84	88	12.0000
((..	chr6:87967056-87967333(+)$1	1	93	97	12.0000
)...	chr11:5424061-5424366(-)$1	1	104	108	12.0000
....	chr14:58755415-58755750(-)$1	1	146	150	12.0000
..((	chr1:39800072-39800355(+)$1	1	153	157	12.0000
...(	chr1:203767363-203767612(+)$1	1	14	18	12.0000
..((	chr1:203766802-203767104(+)$1	1	7	11	12.0000
....	chr12:32134681-32134938(+)$1	1	31	35	12.0000
....	chr4:13604157-13604420(-)$1	1	36	40	12.0000
))))	chr3:47165076-47165349(-)$1	1	261	265	12.0000
....	chr17:41245941-41246199(-)$1	1	157	161	12.0000
(..(	chr19:52090318-52090581(+)$1	1	22	26	12.0000
....	chr15:77473391-77473730(-)$1	1	27	31	12.0000
(..(	chr11:62295121-62295400(-)$1	1	6	10	12.0000
..))	chr13:23911786-23912097(-)$1	1	11	15	12.0000
....	chr11:62297232-62297514(-)$1	1	6	10	12.0000
...(	chr12:32137918-32138253(+)$1	1	0	4	12.0000
((((	chr1:214814996-214815281(+)$1	1	68	72	12.0000
..(.	chr18:19154036-19154308(-)$1	1	35	39	12.0000
..((	chr3:47951064-47951376(-)$1	1	53	57	12.0000
)...	chr3:37368304-37368561(+)$1	1	56	60	12.0000
...(	chr2:109381586-109381827(+)$1	1	6	10	12.0000
))))	chr13:23912167-23912483(-)$1	1	157	161	12.0000
(((.	chr18:9255272-9255515(+)$1	1	39	43	12.0000
....	chr5:180278028-180278349(-)$1	1	16	20	12.0000
..((	chr2:55252967-55253226(-)$1	1	10	14	12.0000
(((.	chr7:152345943-152346213(-)$1	1	44	48	12.0000
((((	chr15:40915353-40915658(+)$1	1	6	10	12.0000
...(	chr1:39876888-39877158(+)$1	1	5	9	12.0000
(..(	chr11:62284815-62285090(-)$1	1	67	71	12.0000
...)	chr3:47163437-47163693(-)$1	1	237	241	12.0000
(((.	chr1:67724667-67724962(+)$1	1	106	110	12.0000
..((	chr1:39800027-39800260(+)$1	1	30	34	12.0000
....	chr1:214815853-214816082(+)$1	1	19	23	12.0000
((((	chr13:23905132-23905408(-)$1	1	25	29	12.0000
....	chr1:214815512-214815823(+)$1	1	107	111	12.0000
..))	chr1:40704096-40704363(+)$1	1	18	22	12.0000
...(	chr1:39876818-39877088(+)$1	1	75	79	12.0000
..))	chr4:13602016-13602281(-)$1	1	169	173	12.0000
))..	chr3:37367775-37368027(+)$1	1	14	18	12.0000
...)	chr2:109384010-109384316(+)$1	1	227	231	12.0000
....	chr3:47952752-47953022(-)$1	1	10	14	12.0000
..))	chr11:62284566-62284781(-)$1	1	16	20	12.0000
....	chr13:23913375-23913631(-)$1	1	51	55	12.0000
((((	chr1:39877956-39878284(+)$1	1	34	38	12.0000
...(	chr1:214819634-214819916(+)$1	1	4	8	12.0000
(...	chr6:111694126-111694442(-)$1	1	234	238	12.0000
(...	chr11:62284890-62285145(-)$1	1	27	31	12.0000
.)))	chr1:91405524-91405769(-)$1	1	22	26	12.0000
.)))	chr11:62296941-62297186(-)$1	1	62	66	12.0000
...(	chr1:91406347-91406603(-)$1	1	26	30	12.0000
....	chr11:5443515-5443781(-)$1	1	18	22	12.0000

#PSSM
A : 0.97	a : 0.02	
A : 0.97	a : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	

#score	1176.0000000000002
#seq	98
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_UTR_m1_run1.nuc.txt

#NT
CAGCGGCAGCGGCAGCAGGA	chr5:95066919-95067152(+)$1	233	107	127	25.1063
cgggggcggcggccggggcc	chr1:1284443-1284711(-)$1	268	93	113	29.6808
Uggcggcggcggcggcggcg	chr7:148395946-148396197(+)$1	251	209	229	37.8723
cggcggcggcggcugggggc	chr1:178994962-178995272(+)$1	310	144	164	32.4468
AGGCGGCGGCGGCGGCGAGG	chr9:126692083-126692349(-)$1	266	0	20	33.0851
CGGCGUUGGCGGCGCCGGAG	chr9:111775567-111775845(-)$1	278	146	166	27.6595
cggcgcggggggcagcgcgg	chr19:5719750-5720047(-)$1	297	188	208	25.3191
CGGCGGCCGCGGGAAAGGCG	chr2:62115553-62115812(-)$1	259	217	237	25.6382
cggcggcggcgguggcggug	chr1:16010923-16011168(+)$1	245	84	104	35.9574
CGGCGGCCUCGGGGGCGGGG	chr8:146017420-146017626(-)$1	206	14	34	29.1489
cgggcgcggcgggggcggcc	chr2:10588211-10588473(-)$1	262	126	146	27.4468
CGGCGGCAGCAGCAGCAGCA	chr2:114647594-114647919(+)$1	325	229	249	25.4255
cggcggcagcggcaacggcg	chr4:83294767-83295027(-)$1	260	227	247	33.1914
CGGCGGCGGCGGCUGCGGCG	chr3:142838635-142838982(+)$1	347	59	79	39.5744
CUGCGGCGGCGGCGGCGGCU	chr22:24129067-24129322(+)$1	255	122	142	33.8297
CGGCGGCGGCGGAAGUGGCC	chr19:18433736-18433992(-)$1	256	117	137	30.3191
CUGGGGCGGAGGCAGCGGCA	chr11:61100327-61100596(-)$1	269	35	55	26.0638
ccgcggcggggccggcgguc	chr19:15442557-15442796(-)$1	239	8	28	25.3191
cggcggcggggagagccgag	chr10:103874490-103874763(-)$1	273	221	241	24.0425
cggcggcgucggcagcagug	chr21:44527469-44527739(-)$1	270	86	106	30.9574
cggcggcggcggcggcggug	chr2:71221729-71222057(-)$1	328	77	97	39.8936
gggagccgggggcugcgggg	chr6:157802624-157802934(+)$1	310	61	81	25.1063
cggcggccgccgccgcgAUG	chr11:819475-819739(+)$1	264	226	246	26.2765
GGACGUCGGAGGCAGCGGGG	chr19:55918966-55919230(-)$1	264	127	147	25.3191
cggcggcggcgggcgcggcg	chr9:134615204-134615466(-)$1	262	65	85	36.7021
AGGCUGAggcggcggcgggc	chr8:102217716-102217963(-)$1	247	103	123	26.4893
cggcgccgggggccUCGGGG	chr1:32403510-32403754(-)$1	244	199	219	28.6170
CUCGGGCGGCGGCCGCGGGG	chr11:64014151-64014405(-)$1	254	20	40	27.7659
GGGCGGUGGGGGCCACGGGG	chr9:139743436-139743687(+)$1	251	31	51	25.6382
gggcggcggcggcggcggcc	chr1:169454921-169455165(-)$1	244	189	209	35.7446
GGGCCCCGGCGGCGGCGGCG	chr19:18530185-18530483(+)$1	298	244	264	30.5319
CCCCAGCGGCGGCAGCGGAG	chr11:65343585-65343851(+)$1	266	22	42	26.7021
CGGGGCCGGGGGCGGCUGGG	chr9:130953670-130953933(-)$1	263	226	246	25.9574
GGGCGGCGGCGGCGGCGGUG	chr14:93799110-93799383(-)$1	273	81	101	36.9148
cggcggccgcggcgaggggg	chr19:1205794-1206052(+)$1	258	147	167	29.2553
GGCCCGGGGCGGCGGCGGAG	chr4:144106166-144106395(+)$1	229	164	184	24.8936
cggcggcggcggcagcggGC	chr17:7210936-7211171(+)$1	235	54	74	37.8723
Uggcggcggccgcggcggcg	chr17:80477550-80477828(+)$1	278	215	235	33.8297
CGUCGGGGGCGGGAGCGGAG	chr1:153949971-153950215(-)$1	244	176	196	27.9787
cggcggcggcggcggcggcg	chr22:38713227-38713504(-)$1	277	126	146	41.3829
CGGCGGCGGCCUCCGCAGCG	chr22:32340568-32340858(+)$1	290	52	72	27.6595
aggagggggcggccgcgggc	chr1:206858416-206858678(+)$1	262	105	125	25.9574
CGGCGGCGGCCAAAGCGGCG	chr3:150264007-150264257(-)$1	250	43	63	28.7234
cggcggcggcggcagcggcg	chr20:57466409-57466666(+)$1	257	44	64	40.9574
cggcggcggcggcggcggcg	chr16:70472765-70473032(-)$1	267	81	101	41.3829
CGGCGGGGGCGGCGUUGGGG	chr1:67895839-67896132(-)$1	293	271	291	29.1489

#otherMatches

#Struct PSSM
ggg[ccc[dddd[ccc[bbm	chr20:57466345-57466609(+)$1	264	108	128	40.9574
333cccFFFFFFYYBBYYA}	chr5:95066919-95067152(+)$1	233	107	127	25.1063
::A{IIIIIIIIIIIIIIII	chr1:1284443-1284711(-)$1	268	93	113	29.6808
dddd22ggggggga]fffff	chr7:148395946-148396197(+)$1	251	209	229	37.8723
ggggggg22eeeee]a::ff	chr1:178994962-178995272(+)$1	310	144	164	32.4468
:DDDD:bb[a[eeeee####	chr9:126692083-126692349(-)$1	266	0	20	33.0851
gdddd]ggggggghhhhhhh	chr9:111775567-111775845(-)$1	278	146	166	27.6595
a]ddddccc[a!!eeeee[a	chr19:5719750-5720047(-)$1	297	188	208	25.3191
dEEEEEYYDDDDCCC}BB}D	chr2:62115553-62115812(-)$1	259	217	237	25.6382
ccc]ccc]bb:DDDD{BB{D	chr1:16010923-16011168(+)$1	245	84	104	35.9574
ccc[gggggggmmmmggggg	chr8:146017420-146017626(-)$1	206	14	34	29.1489
]ccc]hhhhhhhheeeee]b	chr2:10588211-10588473(-)$1	262	126	146	27.4468
5ffffff:bbmmmmbb:::H	chr2:114647594-114647919(+)$1	325	229	249	25.4255
bccc[bb[bb[bbppppppp	chr4:83294767-83295027(-)$1	260	227	247	33.1914
JJJJJJJJJJJJJJJJhhhh	chr3:142838635-142838982(+)$1	347	59	79	39.5744
2ccccccbb[eeeee[eeee	chr22:24129067-24129322(+)$1	255	122	142	33.8297
bb[dddd[bbmmmmbb]ddd	chr19:18433736-18433992(-)$1	256	117	137	30.3191
FFFFF{BBeeeeeffffff[	chr11:61100327-61100596(-)$1	269	35	55	26.0638
JJJJJJJ{EEEEE{BBMMMM	chr19:15442557-15442796(-)$1	239	8	28	25.3191
b::ddddpppppppddddDD	chr10:103874490-103874763(-)$1	273	221	241	24.0425
ggggg]a]dddd]bb333ee	chr21:44527469-44527739(-)$1	270	86	106	30.9574
c22a]dddd22ggggggg]f	chr2:71221729-71222057(-)$1	328	77	97	39.8936
JJJJJJJ:EEEEE{GGGGGG	chr6:157802624-157802934(+)$1	310	61	81	25.1063
CCC}EEEEE}CCCddddrrr	chr11:819475-819739(+)$1	264	226	246	26.2765
dd[a[a[ffffff!!ccc[a	chr19:55918966-55919230(-)$1	264	127	147	25.3191
oobbGGGGGGG{BB{BB{BB	chr9:134615204-134615466(-)$1	262	65	85	36.7021
mbb22eeeee]bb::dddd[	chr8:102217716-102217963(-)$1	247	103	123	26.4893
mmmmbbhhhhhhhhbb]ccc	chr1:32403510-32403754(-)$1	244	199	219	28.6170
DDD{AEEEEEKKFFFFFF{B	chr11:64014151-64014405(-)$1	254	20	40	27.7659
A{A{CCC{EEEEE{CCCFFF	chr9:139743436-139743687(+)$1	251	31	51	25.6382
eeeeeeeeea[dddd[ccco	chr1:169454921-169455165(-)$1	244	189	209	35.7446
]iiiiiiiii]bbddddeee	chr19:18530185-18530483(+)$1	298	244	264	30.5319
DDDA:CCC{BB{A:cccnnn	chr11:65343585-65343851(+)$1	266	22	42	26.7021
FYYEEEEEYYA}BB}FFFFF	chr9:130953670-130953933(-)$1	263	226	246	25.9574
[ccc!!dddd!!a[eeeee#	chr14:93799110-93799383(-)$1	273	81	101	36.9148
}DDDD:::ffffff[annnn	chr19:1205794-1206052(+)$1	258	147	167	29.2553
==========a]eeeeeDDD	chr4:144106166-144106395(+)$1	229	164	184	24.8936
b]bb]bb]bb:bb[======	chr17:7210936-7211171(+)$1	235	54	74	37.8723
oooooa]ddddccca]bb]=	chr17:80477550-80477828(+)$1	278	215	235	33.8297
GGGGeeeee[ccc[dddd[c	chr1:153949971-153950215(-)$1	244	176	196	27.9787
DDD{CCC{BBKKEEEEE{BB	chr22:38713227-38713504(-)$1	277	126	146	41.3829
C{HHHHHHHHdddd####bb	chr22:32340568-32340858(+)$1	290	52	72	27.6595
{BB:ggggggg[ccc[ffff	chr1:206858416-206858678(+)$1	262	105	125	25.9574
ppdddd]bb22dddd]bb]b	chr3:150264007-150264257(-)$1	250	43	63	28.7234
ggg[ccc[dddd[ccc[bbm	chr20:57466409-57466666(+)$1	257	44	64	40.9574
::bb!!dddd[bb[bb[bb[	chr16:70472765-70473032(-)$1	267	81	101	41.3829
FCCC}CCC}CCC}AYYEEEE	chr1:67895839-67896132(-)$1	293	271	291	29.1489

#DB
(((.(((.((((.(((.((.	chr20:57466345-57466609(+)$1	1	108	128	40.9574
...)))))))))..))..).	chr5:95066919-95067152(+)$1	1	107	127	25.1063
..(.((((((((((((((((	chr1:1284443-1284711(-)$1	1	93	113	29.6808
))))..)))))))).)))))	chr7:148395946-148396197(+)$1	1	209	229	37.8723
)))))))..))))).)..((	chr1:178994962-178995272(+)$1	1	144	164	32.4468
.((((.((.(.(((((....	chr9:126692083-126692349(-)$1	1	0	20	33.0851
))))).)))))))(((((((	chr9:111775567-111775845(-)$1	1	146	166	27.6595
).))))(((.(..(((((.(	chr19:5719750-5720047(-)$1	1	188	208	25.3191
))))))..))))))).)).)	chr2:62115553-62115812(-)$1	1	217	237	25.6382
))).))).)).((((.((.(	chr1:16010923-16011168(+)$1	1	84	104	35.9574
(((.(((((((....)))))	chr8:146017420-146017626(-)$1	1	14	34	29.1489
.))).))))))))))))).)	chr2:10588211-10588473(-)$1	1	126	146	27.4468
.)))))).((....))...)	chr2:114647594-114647919(+)$1	1	229	249	25.4255
)(((.((.((.((.......	chr4:83294767-83295027(-)$1	1	227	247	33.1914
((((((((((((((((((((	chr3:142838635-142838982(+)$1	1	59	79	39.5744
.)))(((((.(((((.((((	chr22:24129067-24129322(+)$1	1	122	142	33.8297
((.((((.((....)).)))	chr19:18433736-18433992(-)$1	1	117	137	30.3191
(((((.(((((((((((((.	chr11:61100327-61100596(-)$1	1	35	55	26.0638
(((((((.(((((.((....	chr19:15442557-15442796(-)$1	1	8	28	25.3191
)..((((.......))))))	chr10:103874490-103874763(-)$1	1	221	241	24.0425
))))).).)))).))...))	chr21:44527469-44527739(-)$1	1	86	106	30.9574
)..).))))..))))))).)	chr2:71221729-71222057(-)$1	1	77	97	39.8936
(((((((.(((((.((((((	chr6:157802624-157802934(+)$1	1	61	81	25.1063
))).))))).)))((((...	chr11:819475-819739(+)$1	1	226	246	26.2765
((.(.(.((((((..(((.(	chr19:55918966-55919230(-)$1	1	127	147	25.3191
..))(((((((.((.((.((	chr9:134615204-134615466(-)$1	1	65	85	36.7021
.))..))))).))..((((.	chr8:102217716-102217963(-)$1	1	103	123	26.4893
....)))))))))))).)))	chr1:32403510-32403754(-)$1	1	199	219	28.6170
(((.((((((..((((((.(	chr11:64014151-64014405(-)$1	1	20	40	27.7659
(.(.(((.(((((.((((((	chr9:139743436-139743687(+)$1	1	31	51	25.6382
))))((((((.((((.(((.	chr1:169454921-169455165(-)$1	1	189	209	35.7446
.))))))))).))(((((((	chr19:18530185-18530483(+)$1	1	244	264	30.5319
((((.(((.((.(.(((...	chr11:65343585-65343851(+)$1	1	22	42	26.7021
)..)))))..).)).)))))	chr9:130953670-130953933(-)$1	1	226	246	25.9574
.(((..((((..(.(((((.	chr14:93799110-93799383(-)$1	1	81	101	36.9148
.))))...((((((.(....	chr19:1205794-1206052(+)$1	1	147	167	29.2553
))))))))))).))))))))	chr4:144106166-144106395(+)$1	1	164	184	24.8936
).)).)).)).((.((((((	chr17:7210936-7211171(+)$1	1	54	74	37.8723
.....).)))))))).)).)	chr17:80477550-80477828(+)$1	1	215	235	33.8297
))))(((((.(((.((((.(	chr1:153949971-153950215(-)$1	1	176	196	27.9787
(((.(((.((..(((((.((	chr22:38713227-38713504(-)$1	1	126	146	41.3829
(.((((((((((((....((	chr22:32340568-32340858(+)$1	1	52	72	27.6595
.((.(((((((.(((.((((	chr1:206858416-206858678(+)$1	1	105	125	25.9574
..)))).))..)))).)).)	chr3:150264007-150264257(-)$1	1	43	63	28.7234
(((.(((.((((.(((.((.	chr20:57466409-57466666(+)$1	1	44	64	40.9574
..((..((((.((.((.((.	chr16:70472765-70473032(-)$1	1	81	101	41.3829
)))).))).))).)..))))	chr1:67895839-67896132(-)$1	1	271	291	29.1489

#PSSM
c : 0.40	C : 0.34	G : 0.10	U : 0.04	A : 0.04	g : 0.04	a : 0.02	
g : 0.48	G : 0.38	U : 0.06	A : 0.02	c : 0.02	C : 0.02	
g : 0.51	G : 0.38	C : 0.06	A : 0.02	U : 0.02	
c : 0.42	C : 0.42	G : 0.06	g : 0.04	a : 0.04	
g : 0.48	G : 0.40	C : 0.04	c : 0.02	U : 0.02	A : 0.02	
g : 0.44	G : 0.40	c : 0.06	U : 0.04	C : 0.04	
c : 0.46	C : 0.36	G : 0.06	U : 0.04	g : 0.04	A : 0.02	
g : 0.46	G : 0.38	A : 0.04	C : 0.04	c : 0.04	a : 0.02	
g : 0.51	G : 0.44	U : 0.02	u : 0.02	
c : 0.42	C : 0.38	g : 0.10	A : 0.04	G : 0.04	
g : 0.48	G : 0.40	c : 0.04	C : 0.04	A : 0.02	
g : 0.48	G : 0.42	c : 0.02	a : 0.02	U : 0.02	A : 0.02	
c : 0.44	C : 0.36	G : 0.06	g : 0.06	A : 0.04	u : 0.02	
g : 0.23	A : 0.19	G : 0.19	a : 0.14	c : 0.10	C : 0.06	u : 0.04	U : 0.02	
g : 0.46	G : 0.38	A : 0.04	a : 0.04	U : 0.04	C : 0.02	
c : 0.44	C : 0.42	g : 0.06	U : 0.04	A : 0.02	
g : 0.46	G : 0.40	A : 0.06	c : 0.02	a : 0.02	U : 0.02	
g : 0.46	G : 0.46	A : 0.04	c : 0.02	
c : 0.23	G : 0.21	C : 0.19	g : 0.12	A : 0.08	u : 0.08	U : 0.04	a : 0.02	
G : 0.40	g : 0.31	c : 0.14	A : 0.06	C : 0.04	U : 0.02	

#score	1445.7446808510635
#seq	47
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_transcript_m1_run1.nuc.txt

#NT
UCUUC	chr2:85547668-85547910(-)$1	242	101	106	15.0000
UCUUC	chr2:21229181-21229414(-)$1	233	37	42	15.0000
UCUUC	chr7:139259772-139260063(-)$1	291	100	105	15.0000
UCUUC	chr12:9224879-9225095(-)$1	216	187	192	15.0000
UCUUC	chr15:66792533-66792773(-)$1	240	59	64	15.0000
UCUUC	chr11:86659046-86659310(-)$1	264	53	58	15.0000
UCUUC	chr1:236139415-236139682(-)$1	267	189	194	15.0000
UCUUC	chr12:69746977-69747196(+)$1	219	37	42	15.0000
UCUUC	chr14:68144499-68144765(-)$1	266	113	118	15.0000
UCUUC	chr2:21230744-21230995(-)$1	251	22	27	15.0000
UCUUC	chr9:34635403-34635728(-)$1	325	23	28	15.0000
UCUUC	chr12:57107238-57107493(-)$1	255	16	21	15.0000
UCUUC	chr7:29962121-29962416(-)$1	295	102	107	15.0000
UCUUC	chr6:44220955-44221200(+)$1	245	87	92	15.0000
UCUUC	chr22:29191212-29191436(-)$1	224	127	132	15.0000
UCUUC	chr1:183111907-183112156(+)$1	249	229	234	15.0000
UCUUC	chr10:102120854-102121107(+)$1	253	30	35	15.0000
UCUUC	chr20:30253497-30253827(-)$1	330	59	64	15.0000
UCUUC	chr7:94295038-94295277(+)$1	239	50	55	15.0000
UCUUC	chr11:102101308-102101561(+)$1	253	224	229	15.0000
UCUUC	chr12:57108045-57108267(-)$1	222	35	40	15.0000
UCUUC	chr12:50156818-50157086(+)$1	268	54	59	15.0000
UCUUC	chr6:119500347-119500632(-)$1	285	133	138	15.0000
UCUUC	chr14:94847142-94847359(-)$1	217	58	63	15.0000
UCUUC	chr12:9262416-9262641(-)$1	225	213	218	15.0000
UCUUC	chr3:52029339-52029576(-)$1	237	83	88	15.0000
UCUUC	chr2:85547916-85548174(-)$1	258	92	97	15.0000
UCUUC	chr17:37006359-37006567(-)$1	208	25	30	15.0000
UCUUC	chr2:223806382-223806636(+)$1	254	172	177	15.0000
UCUUC	chrX:20173243-20173504(-)$1	261	142	147	15.0000
UCUUC	chr5:149781139-149781401(-)$1	262	48	53	15.0000
UCUUC	chr8:120252399-120252647(+)$1	248	33	38	15.0000
UCUUC	chr11:75283341-75283608(+)$1	267	153	158	15.0000
UCUUC	chr1:167759601-167759907(+)$1	306	116	121	15.0000
UCUUC	chr20:48698421-48698686(-)$1	265	49	54	15.0000
UCUUC	chr22:21141551-21141785(+)$1	234	67	72	15.0000
UCUUC	chr1:92148583-92148883(-)$1	300	265	270	15.0000
UCUUC	chr2:21229087-21229296(-)$1	209	138	143	15.0000
UCUUC	chr6:138752276-138752551(-)$1	275	69	74	15.0000
ucuuc	chr1:55317510-55317745(-)$1	235	122	127	15.0000
UCUUC	chr7:137563397-137563639(-)$1	242	212	217	15.0000
UCUUC	chr2:43451476-43451721(-)$1	245	232	237	15.0000
UCUUC	chr3:126261295-126261585(+)$1	290	19	24	15.0000
UCUUC	chr12:9243713-9243941(-)$1	228	16	21	15.0000
UCUUC	chr16:11781616-11781909(-)$1	293	70	75	15.0000
UCUUC	chr6:163993633-163994025(+)$1	392	103	108	15.0000
UCUUC	chr2:216236945-216237182(-)$1	237	121	126	15.0000
UCUUC	chr22:33258178-33258439(+)$1	261	80	85	15.0000
UCUUC	chr4:73957063-73957322(-)$1	259	107	112	15.0000
UCUUC	chr3:52029376-52029585(-)$1	209	92	97	15.0000
UCUUC	chr11:35828835-35829203(+)$1	368	119	124	15.0000
UCUUC	chr5:179157454-179157712(+)$1	258	109	114	15.0000
UCUUC	chr11:61732740-61732954(-)$1	214	20	25	15.0000
UCUUC	chr2:21225318-21225525(-)$1	207	125	130	15.0000
UCUUC	chr6:44222084-44222345(-)$1	261	87	92	15.0000

#otherMatches

#Struct PSSM
^^^^^	chr14:94844692-94844943(-)$1	251	84	89	15.0000
fffqq	chr2:85547668-85547910(-)$1	242	101	106	15.0000
::ddd	chr2:21229181-21229414(-)$1	233	37	42	15.0000
:::::	chr7:139259772-139260063(-)$1	291	100	105	15.0000
b]eee	chr12:9224879-9225095(-)$1	216	187	192	15.0000
!!ccc	chr15:66792533-66792773(-)$1	240	59	64	15.0000
:::::	chr11:86659046-86659310(-)$1	264	53	58	15.0000
FF:ii	chr1:236139415-236139682(-)$1	267	189	194	15.0000
ccddd	chr12:69746977-69747196(+)$1	219	37	42	15.0000
hhhh"	chr14:68144499-68144765(-)$1	266	113	118	15.0000
BB:ee	chr2:21230744-21230995(-)$1	251	22	27	15.0000
:::::	chr9:34635403-34635728(-)$1	325	23	28	15.0000
FFFNN	chr12:57107238-57107493(-)$1	255	16	21	15.0000
!a^^^	chr7:29962121-29962416(-)$1	295	102	107	15.0000
ccddd	chr6:44220955-44221200(+)$1	245	87	92	15.0000
dddtt	chr22:29191212-29191436(-)$1	224	127	132	15.0000
}EEEE	chr1:183111907-183112156(+)$1	249	229	234	15.0000
vvvvv	chr10:102120854-102121107(+)$1	253	30	35	15.0000
ppeee	chr20:30253497-30253827(-)$1	330	59	64	15.0000
ooooc	chr7:94295038-94295277(+)$1	239	50	55	15.0000
==22a	chr11:102101308-102101561(+)$1	253	224	229	15.0000
gg"""	chr12:57108045-57108267(-)$1	222	35	40	15.0000
%%%%%	chr12:50156818-50157086(+)$1	268	54	59	15.0000
g::::	chr6:119500347-119500632(-)$1	285	133	138	15.0000
dduuu	chr14:94847142-94847359(-)$1	217	58	63	15.0000
iiiii	chr12:9262416-9262641(-)$1	225	213	218	15.0000
DDKKD	chr3:52029339-52029576(-)$1	237	83	88	15.0000
#bb""	chr2:85547916-85548174(-)$1	258	92	97	15.0000
FF:::	chr17:37006359-37006567(-)$1	208	25	30	15.0000
f::::	chr2:223806382-223806636(+)$1	254	172	177	15.0000
eefff	chrX:20173243-20173504(-)$1	261	142	147	15.0000
ggggg	chr5:149781139-149781401(-)$1	262	48	53	15.0000
FFFMM	chr8:120252399-120252647(+)$1	248	33	38	15.0000
^^^^^	chr11:75283341-75283608(+)$1	267	153	158	15.0000
nnncc	chr1:167759601-167759907(+)$1	306	116	121	15.0000
:::::	chr20:48698421-48698686(-)$1	265	49	54	15.0000
FF:::	chr22:21141551-21141785(+)$1	234	67	72	15.0000
HHHHH	chr1:92148583-92148883(-)$1	300	265	270	15.0000
qqqqq	chr2:21229087-21229296(-)$1	209	138	143	15.0000
%a"""	chr6:138752276-138752551(-)$1	275	69	74	15.0000
ggggb	chr1:55317510-55317745(-)$1	235	122	127	15.0000
[dddd	chr7:137563397-137563639(-)$1	242	212	217	15.0000
44eee	chr2:43451476-43451721(-)$1	245	232	237	15.0000
[bb""	chr3:126261295-126261585(+)$1	290	19	24	15.0000
UUUUU	chr12:9243713-9243941(-)$1	228	16	21	15.0000
eeeee	chr16:11781616-11781909(-)$1	293	70	75	15.0000
b::::	chr6:163993633-163994025(+)$1	392	103	108	15.0000
^^^^^	chr2:216236945-216237182(-)$1	237	121	126	15.0000
ooooo	chr22:33258178-33258439(+)$1	261	80	85	15.0000
dddd^	chr4:73957063-73957322(-)$1	259	107	112	15.0000
rrrrr	chr3:52029376-52029585(-)$1	209	92	97	15.0000
ddd::	chr11:35828835-35829203(+)$1	368	119	124	15.0000
FFLLL	chr5:179157454-179157712(+)$1	258	109	114	15.0000
iiiii	chr11:61732740-61732954(-)$1	214	20	25	15.0000
FFFFC	chr2:21225318-21225525(-)$1	207	125	130	15.0000
MMMMB	chr6:44222084-44222345(-)$1	261	87	92	15.0000

#DB
.....	chr14:94844692-94844943(-)$1	1	84	89	15.0000
(((..	chr2:85547668-85547910(-)$1	1	101	106	15.0000
..(((	chr2:21229181-21229414(-)$1	1	37	42	15.0000
.....	chr7:139259772-139260063(-)$1	1	100	105	15.0000
).)))	chr12:9224879-9225095(-)$1	1	187	192	15.0000
..(((	chr15:66792533-66792773(-)$1	1	59	64	15.0000
.....	chr11:86659046-86659310(-)$1	1	53	58	15.0000
)).((	chr1:236139415-236139682(-)$1	1	189	194	15.0000
))(((	chr12:69746977-69747196(+)$1	1	37	42	15.0000
((((.	chr14:68144499-68144765(-)$1	1	113	118	15.0000
((.((	chr2:21230744-21230995(-)$1	1	22	27	15.0000
.....	chr9:34635403-34635728(-)$1	1	23	28	15.0000
(((..	chr12:57107238-57107493(-)$1	1	16	21	15.0000
.(...	chr7:29962121-29962416(-)$1	1	102	107	15.0000
)))))	chr6:44220955-44221200(+)$1	1	87	92	15.0000
(((..	chr22:29191212-29191436(-)$1	1	127	132	15.0000
.))))	chr1:183111907-183112156(+)$1	1	229	234	15.0000
.....	chr10:102120854-102121107(+)$1	1	30	35	15.0000
..)))	chr20:30253497-30253827(-)$1	1	59	64	15.0000
....)	chr7:94295038-94295277(+)$1	1	50	55	15.0000
))..)	chr11:102101308-102101561(+)$1	1	224	229	15.0000
((...	chr12:57108045-57108267(-)$1	1	35	40	15.0000
.....	chr12:50156818-50157086(+)$1	1	54	59	15.0000
)....	chr6:119500347-119500632(-)$1	1	133	138	15.0000
((...	chr14:94847142-94847359(-)$1	1	58	63	15.0000
)))))	chr12:9262416-9262641(-)$1	1	213	218	15.0000
((..(	chr3:52029339-52029576(-)$1	1	83	88	15.0000
.((..	chr2:85547916-85548174(-)$1	1	92	97	15.0000
((...	chr17:37006359-37006567(-)$1	1	25	30	15.0000
)....	chr2:223806382-223806636(+)$1	1	172	177	15.0000
))(((	chrX:20173243-20173504(-)$1	1	142	147	15.0000
(((((	chr5:149781139-149781401(-)$1	1	48	53	15.0000
(((..	chr8:120252399-120252647(+)$1	1	33	38	15.0000
.....	chr11:75283341-75283608(+)$1	1	153	158	15.0000
...))	chr1:167759601-167759907(+)$1	1	116	121	15.0000
.....	chr20:48698421-48698686(-)$1	1	49	54	15.0000
((...	chr22:21141551-21141785(+)$1	1	67	72	15.0000
)))))	chr1:92148583-92148883(-)$1	1	265	270	15.0000
.....	chr2:21229087-21229296(-)$1	1	138	143	15.0000
.(...	chr6:138752276-138752551(-)$1	1	69	74	15.0000
(((((	chr1:55317510-55317745(-)$1	1	122	127	15.0000
.((((	chr7:137563397-137563639(-)$1	1	212	217	15.0000
..)))	chr2:43451476-43451721(-)$1	1	232	237	15.0000
.((..	chr3:126261295-126261585(+)$1	1	19	24	15.0000
.....	chr12:9243713-9243941(-)$1	1	16	21	15.0000
)))))	chr16:11781616-11781909(-)$1	1	70	75	15.0000
)....	chr6:163993633-163994025(+)$1	1	103	108	15.0000
.....	chr2:216236945-216237182(-)$1	1	121	126	15.0000
.....	chr22:33258178-33258439(+)$1	1	80	85	15.0000
((((.	chr4:73957063-73957322(-)$1	1	107	112	15.0000
.....	chr3:52029376-52029585(-)$1	1	92	97	15.0000
)))..	chr11:35828835-35829203(+)$1	1	119	124	15.0000
((...	chr5:179157454-179157712(+)$1	1	109	114	15.0000
(((((	chr11:61732740-61732954(-)$1	1	20	25	15.0000
)))))	chr2:21225318-21225525(-)$1	1	125	130	15.0000
....(	chr6:44222084-44222345(-)$1	1	87	92	15.0000

#PSSM
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	

#score	840.0000000000005
#seq	56
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_UTR_m3_run1.nuc.txt

#NT
CCUCCGCC	chr17:56591781-56592056(-)$1	275	12	20	15.6666
CGGCCGCC	chr1:52344241-52344511(-)$1	270	147	155	16.4603
CCGCCGCC	chr2:109403132-109403479(+)$1	347	245	253	19.7936
CCGCCGCA	chr19:11708197-11708518(+)$1	321	163	171	15.3492
CCGCAGCC	chr13:37573271-37573544(-)$1	273	156	164	15.3492
CCGCCGCG	chr15:36871772-36872108(+)$1	336	75	83	15.4285
CCGCCGCC	chr3:9691111-9691431(+)$1	320	172	180	19.7936
UCGCCGCC	chr17:5323404-5323661(+)$1	257	177	185	15.4285
CAGCCGCC	chr13:33160544-33160808(+)$1	264	22	30	16.1428
CGGCCGCC	chr13:33160608-33160841(+)$1	233	190	198	16.4603
CCUCCGCC	chr1:167905827-167906186(+)$1	359	32	40	15.6666
CCGCCCCC	chr3:27525678-27525958(-)$1	280	20	28	16.4603
CCGCCGCU	chr6:154831644-154831887(-)$1	243	0	8	15.5079
CAGCCGCC	chr1:43855258-43855567(-)$1	309	112	120	16.1428
ccgcggcc	chr21:36260809-36261071(-)$1	262	118	126	15.3492
CCGCCGCC	chr1:42800639-42800905(-)$1	266	43	51	19.7936
CUGCCGCC	chr8:37962950-37963283(+)$1	333	316	324	16.2222
CCGCAGCC	chr22:51021092-51021379(-)$1	287	15	23	15.3492
CCGCUGCC	chr11:63706370-63706675(+)$1	305	4	12	15.2698
CGGCCGCC	chr2:136499268-136499542(+)$1	274	256	264	16.4603
cccccgcc	chr14:105261860-105262158(-)$1	298	215	223	15.5873
CCGCCCCC	chr13:52158559-52158845(+)$1	286	8	16	16.4603
CCGCCCCC	chr11:64879244-64879536(+)$1	292	9	17	16.4603
UCGCCGCC	chr8:25042151-25042402(+)$1	251	242	250	15.4285
CCGCCGCC	chr5:34656417-34656688(+)$1	271	144	152	19.7936
CCGCCGCC	chr16:56553656-56554034(-)$1	378	249	257	19.7936
CCGCCGAC	chr2:232645780-232646097(-)$1	317	229	237	15.0317
CCGCCGCC	chr9:123342270-123342540(-)$1	270	243	251	19.7936
ccgccgcc	chr1:47184608-47184885(-)$1	277	145	153	19.7936
CCUCCGCC	chr8:101571701-101572074(-)$1	373	75	83	15.6666
CUGCCGCC	chr5:93954282-93954560(+)$1	278	144	152	16.2222
CCGGCGCC	chr1:32645243-32645489(+)$1	246	20	28	15.2698
ccgccccc	chr22:38713196-38713499(-)$1	303	275	283	16.4603
ccgccgcc	chr3:101568257-101568621(+)$1	364	336	344	19.7936
CGGCCGCC	chr13:37633634-37633895(-)$1	261	81	89	16.4603
ccgccucc	chr12:132379120-132379479(+)$1	359	25	33	15.9841
UCGCCGCC	chr12:56321427-56321787(-)$1	360	158	166	15.4285
CCGCCUCC	chr15:50978814-50979100(-)$1	286	276	284	15.9841
CCGGCGCC	chr10:99257918-99258256(-)$1	338	3	11	15.2698
CAGCCGCC	chr9:79792350-79792621(+)$1	271	1	9	16.1428
CCGGCGCC	chr6:31802593-31802848(+)$1	255	58	66	15.2698
CGGCCGCC	chr20:42086520-42086733(+)$1	213	31	39	16.4603
CCCCCGCC	chr3:130465383-130465745(-)$1	362	185	193	15.5873
CCGCCGGC	chr19:58740195-58740414(+)$1	219	75	83	15.0317
CCGCCCCC	chr17:73840441-73840733(-)$1	292	0	8	16.4603
CUGCCGCC	chr13:45992315-45992605(-)$1	290	161	169	16.2222
CGGCCGCC	chr11:47788693-47788983(-)$1	290	105	113	16.4603
CCGCGGCC	chr1:154193299-154193625(+)$1	326	224	232	15.3492
CUGCCGCC	chr5:175976222-175976516(+)$1	294	164	172	16.2222
CCGCCGCU	chr11:777538-777840(+)$1	302	70	78	15.5079
UCGCCGCC	chr15:85923730-85923989(+)$1	259	188	196	15.4285
CGGCCGCC	chr22:38902118-38902413(-)$1	295	92	100	16.4603
CCGCCGCU	chr14:32546304-32546551(+)$1	247	65	73	15.5079
CCGCCCCC	chr5:118788098-118788360(+)$1	262	82	90	16.4603
ccgccgcc	chr7:32931126-32931487(-)$1	361	259	267	19.7936
CCGCCUCC	chr19:10426428-10426773(-)$1	345	105	113	15.9841
CCCCCGCC	chr17:38375490-38375793(+)$1	303	54	62	15.5873
CCGCCCCC	chr16:68344847-68345125(+)$1	278	53	61	16.4603
CCGCCCCC	chr8:144640426-144640692(+)$1	266	207	215	16.4603
CCGCCCCC	chr1:47069761-47070023(-)$1	262	40	48	16.4603
CCUCCGCC	chr14:36295508-36295857(+)$1	349	21	29	15.6666
CCGCCGCC	chr1:21503127-21503474(-)$1	347	226	234	19.7936

#otherMatches

#Struct PSSM
J:bbffff	chr16:2570305-2570561(+)$1	256	110	118	15.4285
GGGGGGGR	chr17:56591781-56592056(-)$1	275	12	20	15.6666
h[ccc[bb	chr1:52344241-52344511(-)$1	270	147	155	16.4603
c]ccc]ee	chr2:109403132-109403479(+)$1	347	245	253	19.7936
ccc!!bb!	chr19:11708197-11708518(+)$1	321	163	171	15.3492
IIIIIIIb	chr13:37573271-37573544(-)$1	273	156	164	15.3492
::GGGGGG	chr15:36871772-36872108(+)$1	336	75	83	15.4285
dd]eeeee	chr3:9691111-9691431(+)$1	320	172	180	19.7936
}CCCBBFF	chr17:5323404-5323661(+)$1	257	177	185	15.4285
d]eeeee]	chr13:33160544-33160808(+)$1	264	22	30	16.1428
f!!bbeee	chr13:33160608-33160841(+)$1	233	190	198	16.4603
:dddd[dd	chr1:167905827-167906186(+)$1	359	32	40	15.6666
llccc22f	chr3:27525678-27525958(-)$1	280	20	28	16.4603
:DDDDCCC	chr6:154831644-154831887(-)$1	243	0	8	15.5079
EEEEEBBE	chr1:43855258-43855567(-)$1	309	112	120	16.1428
llccc]cc	chr21:36260809-36261071(-)$1	262	118	126	15.3492
b]dddd]b	chr1:42800639-42800905(-)$1	266	43	51	19.7936
IIIIACCC	chr8:37962950-37963283(+)$1	333	316	324	16.2222
GGGG:FFF	chr22:51021092-51021379(-)$1	287	15	23	15.3492
eeeeffff	chr11:63706370-63706675(+)$1	305	4	12	15.2698
EEEEE}DD	chr2:136499268-136499542(+)$1	274	256	264	16.4603
FFFFHHHH	chr14:105261860-105262158(-)$1	298	215	223	15.5873
BBcccmmm	chr13:52158559-52158845(+)$1	286	8	16	16.4603
oooooeee	chr11:64879244-64879536(+)$1	292	9	17	16.4603
GGGGGGG:	chr8:25042151-25042402(+)$1	251	242	250	15.4285
eeeecccf	chr5:34656417-34656688(+)$1	271	144	152	19.7936
CCCDDDDA	chr16:56553656-56554034(-)$1	378	249	257	19.7936
ddccc:DD	chr2:232645780-232646097(-)$1	317	229	237	15.0317
mmmmffff	chr9:123342270-123342540(-)$1	270	243	251	19.7936
GGGGCCCC	chr1:47184608-47184885(-)$1	277	145	153	19.7936
GGGGGGLL	chr8:101571701-101572074(-)$1	373	75	83	15.6666
FFLLLCCC	chr5:93954282-93954560(+)$1	278	144	152	16.2222
CC{DDDDf	chr1:32645243-32645489(+)$1	246	20	28	15.2698
JJJJJJJJ	chr22:38713196-38713499(-)$1	303	275	283	16.4603
BA}CCC}E	chr3:101568257-101568621(+)$1	364	336	344	19.7936
bddddddd	chr13:37633634-37633895(-)$1	261	81	89	16.4603
::cccmmm	chr12:132379120-132379479(+)$1	359	25	33	15.9841
::::eeee	chr12:56321427-56321787(-)$1	360	158	166	15.4285
DDDDDYYB	chr15:50978814-50979100(-)$1	286	276	284	15.9841
::BBHHHH	chr10:99257918-99258256(-)$1	338	3	11	15.2698
EEEEEBB{	chr9:79792350-79792621(+)$1	271	1	9	16.1428
DDDD{EEE	chr6:31802593-31802848(+)$1	255	58	66	15.2698
ggggggg]	chr20:42086520-42086733(+)$1	213	31	39	16.4603
BB::ffff	chr3:130465383-130465745(-)$1	362	185	193	15.5873
!!hhhhhh	chr19:58740195-58740414(+)$1	219	75	83	15.0317
ffffffee	chr17:73840441-73840733(-)$1	292	0	8	16.4603
mmcccfff	chr13:45992315-45992605(-)$1	290	161	169	16.2222
FFFFFbb[	chr11:47788693-47788983(-)$1	290	105	113	16.4603
bb]ggggg	chr1:154193299-154193625(+)$1	326	224	232	15.3492
:ffffffm	chr5:175976222-175976516(+)$1	294	164	172	16.2222
GGGG{EEE	chr11:777538-777840(+)$1	302	70	78	15.5079
!!bb[bbp	chr15:85923730-85923989(+)$1	259	188	196	15.4285
eeee[bbb	chr22:38902118-38902413(-)$1	295	92	100	16.4603
hhhhhhhh	chr14:32546304-32546551(+)$1	247	65	73	15.5079
b[hhhhhh	chr5:118788098-118788360(+)$1	262	82	90	16.4603
]a]ggggg	chr7:32931126-32931487(-)$1	361	259	267	19.7936
ccffffff	chr19:10426428-10426773(-)$1	345	105	113	15.9841
EEEEECCC	chr17:38375490-38375793(+)$1	303	54	62	15.5873
22bb22dd	chr16:68344847-68345125(+)$1	278	53	61	16.4603
ffgggggg	chr8:144640426-144640692(+)$1	266	207	215	16.4603
EEEDDDDC	chr1:47069761-47070023(-)$1	262	40	48	16.4603
eeeebbbb	chr14:36295508-36295857(+)$1	349	21	29	15.6666
ggIIIIII	chr1:21503127-21503474(-)$1	347	226	234	19.7936

#DB
(.((((((	chr16:2570305-2570561(+)$1	1	110	118	15.4285
(((((((.	chr17:56591781-56592056(-)$1	1	12	20	15.6666
(.(((.((	chr1:52344241-52344511(-)$1	1	147	155	16.4603
).))).))	chr2:109403132-109403479(+)$1	1	245	253	19.7936
(((..((.	chr19:11708197-11708518(+)$1	1	163	171	15.3492
)))))))(	chr13:37573271-37573544(-)$1	1	156	164	15.3492
..))))))	chr15:36871772-36872108(+)$1	1	75	83	15.4285
)).)))))	chr3:9691111-9691431(+)$1	1	172	180	19.7936
.)))))))	chr17:5323404-5323661(+)$1	1	177	185	15.4285
).))))).	chr13:33160544-33160808(+)$1	1	22	30	16.1428
(..(((((	chr13:33160608-33160841(+)$1	1	190	198	16.4603
.((((.((	chr1:167905827-167906186(+)$1	1	32	40	15.6666
..)))..)	chr3:27525678-27525958(-)$1	1	20	28	16.4603
.(((((((	chr6:154831644-154831887(-)$1	1	0	8	15.5079
((((((((	chr1:43855258-43855567(-)$1	1	112	120	16.1428
..))).))	chr21:36260809-36261071(-)$1	1	118	126	15.3492
).)))).)	chr1:42800639-42800905(-)$1	1	43	51	19.7936
))))))))	chr8:37962950-37963283(+)$1	1	316	324	16.2222
((((.(((	chr22:51021092-51021379(-)$1	1	15	23	15.3492
((((((((	chr11:63706370-63706675(+)$1	1	4	12	15.2698
))))).))	chr2:136499268-136499542(+)$1	1	256	264	16.4603
))))))))	chr14:105261860-105262158(-)$1	1	215	223	15.5873
(((((...	chr13:52158559-52158845(+)$1	1	8	16	16.4603
.....)))	chr11:64879244-64879536(+)$1	1	9	17	16.4603
))))))).	chr8:25042151-25042402(+)$1	1	242	250	15.4285
((((((((	chr5:34656417-34656688(+)$1	1	144	152	19.7936
))))))))	chr16:56553656-56554034(-)$1	1	249	257	19.7936
))))).))	chr2:232645780-232646097(-)$1	1	229	237	15.0317
....))))	chr9:123342270-123342540(-)$1	1	243	251	19.7936
((((((((	chr1:47184608-47184885(-)$1	1	145	153	19.7936
((((((..	chr8:101571701-101572074(-)$1	1	75	83	15.6666
((...(((	chr5:93954282-93954560(+)$1	1	144	152	16.2222
((.(((((	chr1:32645243-32645489(+)$1	1	20	28	15.2698
))))))))	chr22:38713196-38713499(-)$1	1	275	283	16.4603
)).))).)	chr3:101568257-101568621(+)$1	1	336	344	19.7936
)))))(((	chr13:37633634-37633895(-)$1	1	81	89	16.4603
..(((...	chr12:132379120-132379479(+)$1	1	25	33	15.9841
....((((	chr12:56321427-56321787(-)$1	1	158	166	15.4285
)))))..)	chr15:50978814-50979100(-)$1	1	276	284	15.9841
..((((((	chr10:99257918-99258256(-)$1	1	3	11	15.2698
(((((((.	chr9:79792350-79792621(+)$1	1	1	9	16.1428
((((.(((	chr6:31802593-31802848(+)$1	1	58	66	15.2698
))))))).	chr20:42086520-42086733(+)$1	1	31	39	16.4603
((..((((	chr3:130465383-130465745(-)$1	1	185	193	15.5873
..((((((	chr19:58740195-58740414(+)$1	1	75	83	15.0317
((((((((	chr17:73840441-73840733(-)$1	1	0	8	16.4603
..)))(((	chr13:45992315-45992605(-)$1	1	161	169	16.2222
)))))((.	chr11:47788693-47788983(-)$1	1	105	113	16.4603
)).)))))	chr1:154193299-154193625(+)$1	1	224	232	15.3492
.((((((.	chr5:175976222-175976516(+)$1	1	164	172	16.2222
((((.(((	chr11:777538-777840(+)$1	1	70	78	15.5079
..((.((.	chr15:85923730-85923989(+)$1	1	188	196	15.4285
((((.(((	chr22:38902118-38902413(-)$1	1	92	100	16.4603
))))))))	chr14:32546304-32546551(+)$1	1	65	73	15.5079
(.((((((	chr5:118788098-118788360(+)$1	1	82	90	16.4603
.).)))))	chr7:32931126-32931487(-)$1	1	259	267	19.7936
))((((((	chr19:10426428-10426773(-)$1	1	105	113	15.9841
((((((((	chr17:38375490-38375793(+)$1	1	54	62	15.5873
..))..))	chr16:68344847-68345125(+)$1	1	53	61	16.4603
))))))))	chr8:144640426-144640692(+)$1	1	207	215	16.4603
((((((((	chr1:47069761-47070023(-)$1	1	40	48	16.4603
((((((((	chr14:36295508-36295857(+)$1	1	21	29	15.6666
))((((((	chr1:21503127-21503474(-)$1	1	226	234	19.7936

#PSSM
C : 0.82	c : 0.11	U : 0.06	
C : 0.66	G : 0.11	c : 0.11	U : 0.06	A : 0.04	
G : 0.79	g : 0.09	U : 0.06	C : 0.03	c : 0.01	
C : 0.84	c : 0.11	G : 0.04	
C : 0.82	c : 0.09	A : 0.03	g : 0.01	U : 0.01	G : 0.01	
G : 0.73	C : 0.12	g : 0.07	U : 0.03	c : 0.01	u : 0.01	
C : 0.85	c : 0.11	A : 0.01	G : 0.01	
C : 0.79	c : 0.11	U : 0.04	G : 0.03	A : 0.01	

#score	1038.984126984126
#seq	63
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_CDS_m1_run2.nuc.txt

#NT
CCUUUUG	chr9:19126204-19126479(-)$1	275	120	127	13.1428
CUUUUUC	chr10:70516163-70516430(+)$1	267	94	101	14.5714
CUCUUUG	chr12:72004233-72004553(-)$1	320	53	60	12.6666
CUUUCUG	chr2:85823689-85824000(+)$1	311	98	105	12.5873
CUUUUUC	chr12:69746909-69747122(+)$1	213	11	18	14.5714
CUUUUUG	chr19:10794554-10794821(+)$1	267	208	215	17.1111
CUUUUUA	chr9:95013915-95014201(-)$1	286	19	26	14.3333
CUGUUUG	chr12:12976134-12976430(+)$1	296	231	238	12.5079
CCUUUUG	chr2:242276811-242277092(+)$1	281	106	113	13.1428
cuuuuug	chr16:56973980-56974238(+)$1	258	241	248	17.1111
CUUUUUU	chr9:86584165-86584402(-)$1	237	24	31	14.7301
CUUAUUG	chr6:31625410-31625664(+)$1	254	67	74	12.5079
CUUUUUG	chr4:74321295-74321509(+)$1	214	121	128	17.1111
CUUUUUC	chr1:33252379-33252660(-)$1	281	101	108	14.5714
CUUUUUA	chr14:73566372-73566623(+)$1	251	123	130	14.3333
CUUUUUG	chr6:24291049-24291291(-)$1	242	97	104	17.1111
CUUUUUG	chr14:96998670-96998961(+)$1	291	152	159	17.1111
CUUUUUA	chr14:97000813-97001047(+)$1	234	2	9	14.3333
Cuuuuuu	chr3:50098915-50099160(+)$1	245	77	84	14.7301
cuuguug	chrX:48673629-48673897(+)$1	268	55	62	12.5873
CAUUUUG	chr12:69746922-69747141(+)$1	219	101	108	12.9047
CCUUUUG	chr17:36871915-36872218(+)$1	303	207	214	13.1428
CUUUCUG	chr19:45452360-45452631(+)$1	271	119	126	12.5873
CUUUUUC	chr11:70265873-70266133(+)$1	260	201	208	14.5714
CUUUUUU	chr8:101717138-101717361(-)$1	223	34	41	14.7301
CUUUUUA	chr2:86360303-86360600(+)$1	297	266	273	14.3333
CUUUUUC	chr10:101563802-101564104(+)$1	302	279	286	14.5714
CUUUUUU	chr16:2820923-2821181(+)$1	258	89	96	14.7301
CUUUUUU	chr4:166418658-166418903(+)$1	245	164	171	14.7301
CUUUUUG	chr20:57568642-57568968(+)$1	326	230	237	17.1111
CUUUUUC	chr13:98654732-98655036(+)$1	304	95	102	14.5714
CCUUUUG	chr2:198284951-198285222(-)$1	271	58	65	13.1428
CUUUUUG	chr2:58389959-58390236(-)$1	277	100	107	17.1111
auuuuug	chr2:120885116-120885368(+)$1	252	11	18	12.6666
CUCUUUG	chr4:26431509-26431771(+)$1	262	197	204	12.6666
CUUUUUG	chr4:74321281-74321495(+)$1	214	135	142	17.1111
UUUUUUG	chr2:114476679-114476941(-)$1	262	74	81	12.7460
CUCUUUG	chr11:61572016-61572282(-)$1	266	24	31	12.6666
CUUUUUG	chr17:48827968-48828209(+)$1	241	118	125	17.1111
GUUUUUG	chr17:37009850-37010070(-)$1	220	6	13	12.8253
CUUUUUC	chr11:61188479-61188748(-)$1	269	2	9	14.5714
CUUUUUU	chr1:33146018-33146294(+)$1	276	94	101	14.7301
CUUGUUG	chr11:33163020-33163287(-)$1	267	18	25	12.5873
UUUUUUG	chr2:70452412-70452649(-)$1	237	44	51	12.7460
CUUUUUU	chr2:148695662-148695945(-)$1	283	99	106	14.7301
GUUUUUG	chr20:5159478-5159740(+)$1	262	163	170	12.8253
CUUUUUG	chr4:74321268-74321481(+)$1	213	148	155	17.1111
CUUUUUG	chr4:74321309-74321518(+)$1	209	107	114	17.1111
CUUUUUU	chr3:42660488-42660764(+)$1	276	0	7	14.7301
CUUCUUG	chr4:39459823-39460087(-)$1	264	250	257	12.5079
CUUUUUC	chr4:110661921-110662157(-)$1	236	136	143	14.5714
CUUUUUG	chr4:74321319-74321546(+)$1	227	97	104	17.1111
CUUUGUG	chr4:78739996-78740349(-)$1	353	192	199	12.5079
CAUUUUG	chr12:69746941-69747182(+)$1	241	82	89	12.9047
CCUUUUG	chr15:44085987-44086282(+)$1	295	123	130	13.1428
CUUUUUA	chr11:17153282-17153580(-)$1	298	44	51	14.3333
CUUUAUG	chr10:103557545-103557823(-)$1	278	11	18	12.5079
CUUUUUU	chr6:142630669-142630952(+)$1	283	212	219	14.7301
GUUUUUG	chr15:64430209-64430495(+)$1	286	19	26	12.8253
cuuuuuu	chr19:18390715-18390967(-)$1	252	89	96	14.7301
CUUUUUG	chr2:170668193-170668461(+)$1	268	213	220	17.1111
CUUUUUG	chr15:85213072-85213393(-)$1	321	104	111	17.1111

#otherMatches

#Struct PSSM
nnnffff	chr11:17096903-17097199(-)$1	296	67	74	12.8253
fuuuuuu	chr9:19126204-19126479(-)$1	275	120	127	13.1428
cciiiii	chr10:70516163-70516430(+)$1	267	94	101	14.5714
[eeeee[	chr12:72004233-72004553(-)$1	320	53	60	12.6666
+++++++	chr2:85823689-85824000(+)$1	311	98	105	12.5873
:::::::	chr12:69746909-69747122(+)$1	213	11	18	14.5714
cc22ddd	chr19:10794554-10794821(+)$1	267	208	215	17.1111
biiiiii	chr9:95013915-95014201(-)$1	286	19	26	14.3333
GGG????	chr12:12976134-12976430(+)$1	296	231	238	12.5079
dddrrrr	chr2:242276811-242277092(+)$1	281	106	113	13.1428
sssgggg	chr16:56973980-56974238(+)$1	258	241	248	17.1111
hh^^^^^	chr9:86584165-86584402(-)$1	237	24	31	14.7301
eeeeecc	chr6:31625410-31625664(+)$1	254	67	74	12.5079
nnnnnbb	chr4:74321295-74321509(+)$1	214	121	128	17.1111
ffffff#	chr1:33252379-33252660(-)$1	281	101	108	14.5714
^^^^^^^	chr14:73566372-73566623(+)$1	251	123	130	14.3333
dddoooo	chr6:24291049-24291291(-)$1	242	97	104	17.1111
:hhhhhh	chr14:96998670-96998961(+)$1	291	152	159	17.1111
:::::::	chr14:97000813-97001047(+)$1	234	2	9	14.3333
iiiiiii	chr3:50098915-50099160(+)$1	245	77	84	14.7301
qqqqqqe	chrX:48673629-48673897(+)$1	268	55	62	12.5873
HHHHHHH	chr12:69746922-69747141(+)$1	219	101	108	12.9047
::::::e	chr17:36871915-36872218(+)$1	303	207	214	13.1428
ccc22bb	chr19:45452360-45452631(+)$1	271	119	126	12.5873
hhhhhhh	chr11:70265873-70266133(+)$1	260	201	208	14.5714
=======	chr8:101717138-101717361(-)$1	223	34	41	14.7301
DD_____	chr2:86360303-86360600(+)$1	297	266	273	14.3333
iiiiiii	chr10:101563802-101564104(+)$1	302	279	286	14.5714
==!!eee	chr16:2820923-2821181(+)$1	258	89	96	14.7301
9999999	chr4:166418658-166418903(+)$1	245	164	171	14.7301
ooooooc	chr20:57568642-57568968(+)$1	326	230	237	17.1111
e22dddd	chr13:98654732-98655036(+)$1	304	95	102	14.5714
[ccc[ii	chr2:198284951-198285222(-)$1	271	58	65	13.1428
:::::::	chr2:58389959-58390236(-)$1	277	100	107	17.1111
:::::bb	chr2:120885116-120885368(+)$1	252	11	18	12.6666
cc!!hhh	chr4:26431509-26431771(+)$1	262	197	204	12.6666
:iiiiii	chr4:74321281-74321495(+)$1	214	135	142	17.1111
HHH::ff	chr2:114476679-114476941(-)$1	262	74	81	12.7460
PPPPPPF	chr11:61572016-61572282(-)$1	266	24	31	12.6666
eee"""c	chr17:48827968-48828209(+)$1	241	118	125	17.1111
fqqqqqq	chr17:37009850-37010070(-)$1	220	6	13	12.8253
iiiiiii	chr11:61188479-61188748(-)$1	269	2	9	14.5714
:::::::	chr1:33146018-33146294(+)$1	276	94	101	14.7301
GGGGGG:	chr11:33163020-33163287(-)$1	267	18	25	12.5873
:::hhhh	chr2:70452412-70452649(-)$1	237	44	51	12.7460
]dddd]c	chr2:148695662-148695945(-)$1	283	99	106	14.7301
gggg]==	chr20:5159478-5159740(+)$1	262	163	170	12.8253
:iiiiii	chr4:74321268-74321481(+)$1	213	148	155	17.1111
cnnnnnc	chr4:74321309-74321518(+)$1	209	107	114	17.1111
=======	chr3:42660488-42660764(+)$1	276	0	7	14.7301
YCCC}EE	chr4:39459823-39460087(-)$1	264	250	257	12.5079
&&iiiii	chr4:110661921-110662157(-)$1	236	136	143	14.5714
cnnnnnc	chr4:74321319-74321546(+)$1	227	97	104	17.1111
HHHH:dd	chr4:78739996-78740349(-)$1	353	192	199	12.5079
DDDD{GG	chr12:69746941-69747182(+)$1	241	82	89	12.9047
:::::::	chr15:44085987-44086282(+)$1	295	123	130	13.1428
c::::::	chr11:17153282-17153580(-)$1	298	44	51	14.3333
c[dddde	chr10:103557545-103557823(-)$1	278	11	18	12.5079
hhh^^^^	chr6:142630669-142630952(+)$1	283	212	219	14.7301
G{HHHHH	chr15:64430209-64430495(+)$1	286	19	26	12.8253
:::====	chr19:18390715-18390967(-)$1	252	89	96	14.7301
eeeeeee	chr2:170668193-170668461(+)$1	268	213	220	17.1111
cqqqqqq	chr15:85213072-85213393(-)$1	321	104	111	17.1111

#DB
...))))	chr11:17096903-17097199(-)$1	1	67	74	12.8253
(......	chr9:19126204-19126479(-)$1	1	120	127	13.1428
)))))))	chr10:70516163-70516430(+)$1	1	94	101	14.5714
.(((((.	chr12:72004233-72004553(-)$1	1	53	60	12.6666
.......	chr2:85823689-85824000(+)$1	1	98	105	12.5873
.......	chr12:69746909-69747122(+)$1	1	11	18	14.5714
))..)))	chr19:10794554-10794821(+)$1	1	208	215	17.1111
(((((((	chr9:95013915-95014201(-)$1	1	19	26	14.3333
)))....	chr12:12976134-12976430(+)$1	1	231	238	12.5079
(((....	chr2:242276811-242277092(+)$1	1	106	113	13.1428
...))))	chr16:56973980-56974238(+)$1	1	241	248	17.1111
((.....	chr9:86584165-86584402(-)$1	1	24	31	14.7301
(((((((	chr6:31625410-31625664(+)$1	1	67	74	12.5079
.....))	chr4:74321295-74321509(+)$1	1	121	128	17.1111
((((((.	chr1:33252379-33252660(-)$1	1	101	108	14.5714
.......	chr14:73566372-73566623(+)$1	1	123	130	14.3333
(((....	chr6:24291049-24291291(-)$1	1	97	104	17.1111
.((((((	chr14:96998670-96998961(+)$1	1	152	159	17.1111
.......	chr14:97000813-97001047(+)$1	1	2	9	14.3333
(((((((	chr3:50098915-50099160(+)$1	1	77	84	14.7301
......)	chrX:48673629-48673897(+)$1	1	55	62	12.5873
)))))))	chr12:69746922-69747141(+)$1	1	101	108	12.9047
......(	chr17:36871915-36872218(+)$1	1	207	214	13.1428
)))..))	chr19:45452360-45452631(+)$1	1	119	126	12.5873
)))))))	chr11:70265873-70266133(+)$1	1	201	208	14.5714
(((((((	chr8:101717138-101717361(-)$1	1	34	41	14.7301
)).....	chr2:86360303-86360600(+)$1	1	266	273	14.3333
)))))))	chr10:101563802-101564104(+)$1	1	279	286	14.5714
((..(((	chr16:2820923-2821181(+)$1	1	89	96	14.7301
.......	chr4:166418658-166418903(+)$1	1	164	171	14.7301
......)	chr20:57568642-57568968(+)$1	1	230	237	17.1111
)..))))	chr13:98654732-98655036(+)$1	1	95	102	14.5714
.(((.((	chr2:198284951-198285222(-)$1	1	58	65	13.1428
.......	chr2:58389959-58390236(-)$1	1	100	107	17.1111
.....((	chr2:120885116-120885368(+)$1	1	11	18	12.6666
((..(((	chr4:26431509-26431771(+)$1	1	197	204	12.6666
.((((((	chr4:74321281-74321495(+)$1	1	135	142	17.1111
(((..((	chr2:114476679-114476941(-)$1	1	74	81	12.7460
......(	chr11:61572016-61572282(-)$1	1	24	31	12.6666
(((...(	chr17:48827968-48828209(+)$1	1	118	125	17.1111
(......	chr17:37009850-37010070(-)$1	1	6	13	12.8253
(((((((	chr11:61188479-61188748(-)$1	1	2	9	14.5714
.......	chr1:33146018-33146294(+)$1	1	94	101	14.7301
((((((.	chr11:33163020-33163287(-)$1	1	18	25	12.5873
...((((	chr2:70452412-70452649(-)$1	1	44	51	12.7460
.)))).)	chr2:148695662-148695945(-)$1	1	99	106	14.7301
)))).))	chr20:5159478-5159740(+)$1	1	163	170	12.8253
.((((((	chr4:74321268-74321481(+)$1	1	148	155	17.1111
(.....)	chr4:74321309-74321518(+)$1	1	107	114	17.1111
(((((((	chr3:42660488-42660764(+)$1	1	0	7	14.7301
.))).))	chr4:39459823-39460087(-)$1	1	250	257	12.5079
..(((((	chr4:110661921-110662157(-)$1	1	136	143	14.5714
(.....)	chr4:74321319-74321546(+)$1	1	97	104	17.1111
)))).((	chr4:78739996-78740349(-)$1	1	192	199	12.5079
((((.((	chr12:69746941-69747182(+)$1	1	82	89	12.9047
.......	chr15:44085987-44086282(+)$1	1	123	130	13.1428
)......	chr11:17153282-17153580(-)$1	1	44	51	14.3333
(.(((((	chr10:103557545-103557823(-)$1	1	11	18	12.5079
(((....	chr6:142630669-142630952(+)$1	1	212	219	14.7301
(.(((((	chr15:64430209-64430495(+)$1	1	19	26	12.8253
...((((	chr19:18390715-18390967(-)$1	1	89	96	14.7301
(((((((	chr2:170668193-170668461(+)$1	1	213	220	17.1111
(......	chr15:85213072-85213393(-)$1	1	104	111	17.1111

#PSSM
C : 0.85	c : 0.04	G : 0.04	U : 0.03	a : 0.01	
U : 0.79	C : 0.07	u : 0.07	A : 0.03	G : 0.01	
U : 0.85	u : 0.07	C : 0.04	G : 0.01	
U : 0.87	u : 0.06	A : 0.01	g : 0.01	G : 0.01	C : 0.01	
U : 0.85	u : 0.07	C : 0.03	G : 0.01	A : 0.01	
U : 0.92	u : 0.07	
G : 0.58	C : 0.12	U : 0.12	A : 0.07	g : 0.04	u : 0.03	

#score	906.9682539682525
#seq	63
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_transcript_m2_run2.nuc.txt

#NT
uuAAAAAAAAU	chr3:61724704-61724935(-)$1	231	131	142	22.7058
ucaaaaaaaaa	chr17:40646249-40646468(+)$1	219	0	11	22.7058
GUaaaaaaaaa	chr22:51108194-51108416(+)$1	222	138	149	22.6078
UUUAAAGAAAA	chr13:100215258-100215540(+)$1	282	233	244	19.1764
cuaagaaaaaa	chr2:233987455-233987696(+)$1	241	58	69	18.1960
UUAAAUaaaac	chr3:169962498-169962711(+)$1	213	182	193	18.5882
UUAAAAAAAAG	chr18:43793240-43793487(+)$1	247	138	149	22.5098
UUAAAAAACAA	chr1:233807400-233807654(+)$1	254	12	23	23.0980
ucAAAAAACAA	chr17:38547377-38547619(-)$1	242	130	141	18.9803
UUAAAAAAACA	chr17:41149844-41150076(-)$1	232	140	151	22.7058
uuuaaagaaaa	chr14:31713934-31714164(+)$1	230	130	141	19.1764
UUAAaaaaaaa	chr11:118841148-118841377(+)$1	229	153	164	26.8235
uuuaaaaAAAA	chr14:35402615-35402832(-)$1	217	3	14	23.4901
uuaaaaaauaa	chr5:64018211-64018431(-)$1	220	142	153	22.9999
uuAAAAAAAAA	chr1:240504639-240504868(+)$1	229	135	146	26.8235
ucaaaaagaaa	chr5:154157029-154157271(+)$1	242	49	60	18.3921
UUGAAUAAAAA	chr21:33755670-33755927(-)$1	257	149	160	18.7843
uuAAGAAAAAA	chr17:41084831-41085035(-)$1	204	167	178	22.2156
uuAAAAAAAAA	chr2:85661610-85661845(+)$1	235	128	139	26.8235
uuaaaaaaaaa	chr7:6252237-6252474(-)$1	237	203	214	26.8235
uuuaaaauaaa	chr11:77780878-77781164(-)$1	286	46	57	19.0784
uuaaaaaaaaa	chr1:185226969-185227180(-)$1	211	134	145	26.8235
aaaaaaaaaaa	chr8:97321357-97321595(-)$1	238	156	167	18.5882
uuaaagaagaa	chr13:61390735-61390962(-)$1	227	25	36	18.9803
UUAAAUCAAAA	chr1:118069905-118070146(+)$1	241	166	177	18.2941
uuaaaaagaaa	chr11:77243766-77243980(-)$1	214	126	137	22.5098
cuAAAGAAAAA	chr14:56118213-56118459(+)$1	246	134	145	18.8823
auaaaaaaaga	chr18:31581633-31581865(-)$1	232	217	228	19.1764
UUAAAAAAAGC	chr10:30610104-30610348(-)$1	244	42	53	18.9803
UUAAAAAAUGA	chr4:122250125-122250358(-)$1	233	17	28	19.3725
uuAAaaacaaa	chrX:64905682-64905900(+)$1	218	108	119	22.5098
UUUAAAAAAGA	chr18:12760710-12760914(+)$1	204	115	126	19.8627
AGAAAAAAAAA	chr9:113859512-113859738(-)$1	226	148	159	18.4901
uuAAAAAACAA	chr12:100651362-100651648(-)$1	286	179	190	23.0980
uuuaaaaAAAA	chr14:35402632-35402843(-)$1	211	14	25	23.4901
UAAAAAAAAAA	chr2:209129262-209129482(-)$1	220	0	11	22.6078
uuaaaaaaaau	chr1:164823421-164823665(+)$1	244	151	162	22.7058
uuaaaaaaaga	chr1:115033318-115033522(+)$1	204	146	157	23.1960
uuAAaaacaaa	chrX:64905672-64905882(+)$1	210	118	129	22.5098
uuaaaaaaaaa	chr15:52176709-52176951(+)$1	242	137	148	26.8235
uuAAAAAAGAA	chr18:28962249-28962501(+)$1	252	140	151	22.9019
UUAAAAAAUAA	chr14:50058854-50059074(-)$1	220	174	185	22.9999
cuAAAAAAAUA	chrX:85274599-85274817(+)$1	218	115	126	18.6862
uuAAAGAAAAA	chr15:64737228-64737452(-)$1	224	120	131	22.9019
uuAAAAAAAAA	chr2:128556462-128556687(-)$1	225	206	217	26.8235
uuAAAGGAAAA	chr2:206890280-206890519(+)$1	239	137	148	18.5882
UUUAAAAAAGA	chr18:12760678-12760898(+)$1	220	147	158	19.8627
uuAAAAAAAAU	chr4:89251232-89251459(-)$1	227	128	139	22.7058
UUAAAAAACAA	chr1:233807393-233807600(+)$1	207	19	30	23.0980
uuaaaaaaaaa	chr1:185226949-185227169(-)$1	220	123	134	26.8235

#otherMatches

#Struct PSSM
===========	chr1:52331241-52331474(+)$1	233	136	147	23.4901
d!!gggggggm	chr3:61724704-61724935(-)$1	231	131	142	22.7058
:::::::::::	chr17:40646249-40646468(+)$1	219	0	11	22.7058
^^^^^^^^^^^	chr22:51108194-51108416(+)$1	222	138	149	22.6078
JJJ////////	chr13:100215258-100215540(+)$1	282	233	244	19.1764
eeccc&&&&&&	chr2:233987455-233987696(+)$1	241	58	69	18.1960
@@@@@@@@@@@	chr3:169962498-169962711(+)$1	213	182	193	18.5882
2ffffff22cc	chr18:43793240-43793487(+)$1	247	138	149	22.5098
^^^^^^^^^^^	chr1:233807400-233807654(+)$1	254	12	23	23.0980
:::::::::::	chr17:38547377-38547619(-)$1	242	130	141	18.9803
eellleeeee:	chr17:41149844-41150076(-)$1	232	140	151	22.7058
:::::::::::	chr14:31713934-31714164(+)$1	230	130	141	19.1764
2bb::::::::	chr11:118841148-118841377(+)$1	229	153	164	26.8235
D::::::::ff	chr14:35402615-35402832(-)$1	217	3	14	23.4901
:::::::::::	chr5:64018211-64018431(-)$1	220	142	153	22.9999
fff]eeeee::	chr1:240504639-240504868(+)$1	229	135	146	26.8235
CCCNNNNNGGG	chr5:154157029-154157271(+)$1	242	49	60	18.3921
>>>>>>>>>>>	chr21:33755670-33755927(-)$1	257	149	160	18.7843
ggg:EEEEE}E	chr17:41084831-41085035(-)$1	204	167	178	22.2156
CC:::::::::	chr2:85661610-85661845(+)$1	235	128	139	26.8235
ee####fffff	chr7:6252237-6252474(-)$1	237	203	214	26.8235
hhhhhhh::::	chr11:77780878-77781164(-)$1	286	46	57	19.0784
:::::::::::	chr1:185226969-185227180(-)$1	211	134	145	26.8235
:::::::::::	chr8:97321357-97321595(-)$1	238	156	167	18.5882
wwwwwwwweee	chr13:61390735-61390962(-)$1	227	25	36	18.9803
v==========	chr1:118069905-118070146(+)$1	241	166	177	18.2941
EEEEE}DDDD|	chr11:77243766-77243980(-)$1	214	126	137	22.5098
:::::::::::	chr14:56118213-56118459(+)$1	246	134	145	18.8823
666666eeeee	chr18:31581633-31581865(-)$1	232	217	228	19.1764
::::::::ddd	chr10:30610104-30610348(-)$1	244	42	53	18.9803
ddmmmmdddd:	chr4:122250125-122250358(-)$1	233	17	28	19.3725
^^^^^^^^^^^	chrX:64905682-64905900(+)$1	218	108	119	22.5098
hhhmmmmhhhh	chr18:12760710-12760914(+)$1	204	115	126	19.8627
^^^^^^^^^^^	chr9:113859512-113859738(-)$1	226	148	159	18.4901
D::::::::::	chr12:100651362-100651648(-)$1	286	179	190	23.0980
:::::::::ff	chr14:35402632-35402843(-)$1	211	14	25	23.4901
:::::::::::	chr2:209129262-209129482(-)$1	220	0	11	22.6078
!!ddddmmmmd	chr1:164823421-164823665(+)$1	244	151	162	22.7058
=========::	chr1:115033318-115033522(+)$1	204	146	157	23.1960
^^^^^^^^^^^	chrX:64905672-64905882(+)$1	210	118	129	22.5098
JJJ@@@@@@@@	chr15:52176709-52176951(+)$1	242	137	148	26.8235
ff[eeeeeooo	chr18:28962249-28962501(+)$1	252	140	151	22.9019
ddvvvvvvvvv	chr14:50058854-50059074(-)$1	220	174	185	22.9999
II:::::::::	chrX:85274599-85274817(+)$1	218	115	126	18.6862
FFLLLDDDDgg	chr15:64737228-64737452(-)$1	224	120	131	22.9019
H::::::::::	chr2:128556462-128556687(-)$1	225	206	217	26.8235
IZZZA}A@@@@	chr2:206890280-206890519(+)$1	239	137	148	18.5882
fffff22ccc]	chr18:12760678-12760898(+)$1	220	147	158	19.8627
I:::::::::G	chr4:89251232-89251459(-)$1	227	128	139	22.7058
^^^^^^^^^^^	chr1:233807393-233807600(+)$1	207	19	30	23.0980
:::::::::::	chr1:185226949-185227169(-)$1	220	123	134	26.8235

#DB
(((((((((((	chr1:52331241-52331474(+)$1	1	136	147	23.4901
(..(((((((.	chr3:61724704-61724935(-)$1	1	131	142	22.7058
...........	chr17:40646249-40646468(+)$1	1	0	11	22.7058
...........	chr22:51108194-51108416(+)$1	1	138	149	22.6078
)))........	chr13:100215258-100215540(+)$1	1	233	244	19.1764
(((((......	chr2:233987455-233987696(+)$1	1	58	69	18.1960
...........	chr3:169962498-169962711(+)$1	1	182	193	18.5882
.))))))..))	chr18:43793240-43793487(+)$1	1	138	149	22.5098
...........	chr1:233807400-233807654(+)$1	1	12	23	23.0980
...........	chr17:38547377-38547619(-)$1	1	130	141	18.9803
((...))))).	chr17:41149844-41150076(-)$1	1	140	151	22.7058
...........	chr14:31713934-31714164(+)$1	1	130	141	19.1764
.))........	chr11:118841148-118841377(+)$1	1	153	164	26.8235
(........((	chr14:35402615-35402832(-)$1	1	3	14	23.4901
...........	chr5:64018211-64018431(-)$1	1	142	153	22.9999
))).)))))..	chr1:240504639-240504868(+)$1	1	135	146	26.8235
(((.....(((	chr5:154157029-154157271(+)$1	1	49	60	18.3921
...........	chr21:33755670-33755927(-)$1	1	149	160	18.7843
))).))))).)	chr17:41084831-41085035(-)$1	1	167	178	22.2156
)).........	chr2:85661610-85661845(+)$1	1	128	139	26.8235
((....(((((	chr7:6252237-6252474(-)$1	1	203	214	26.8235
)))))))....	chr11:77780878-77781164(-)$1	1	46	57	19.0784
...........	chr1:185226969-185227180(-)$1	1	134	145	26.8235
...........	chr8:97321357-97321595(-)$1	1	156	167	18.5882
........)))	chr13:61390735-61390962(-)$1	1	25	36	18.9803
.))))))))))	chr1:118069905-118070146(+)$1	1	166	177	18.2941
))))).)))).	chr11:77243766-77243980(-)$1	1	126	137	22.5098
...........	chr14:56118213-56118459(+)$1	1	134	145	18.8823
......)))))	chr18:31581633-31581865(-)$1	1	217	228	19.1764
........(((	chr10:30610104-30610348(-)$1	1	42	53	18.9803
((....)))).	chr4:122250125-122250358(-)$1	1	17	28	19.3725
...........	chrX:64905682-64905900(+)$1	1	108	119	22.5098
(((....))))	chr18:12760710-12760914(+)$1	1	115	126	19.8627
...........	chr9:113859512-113859738(-)$1	1	148	159	18.4901
(..........	chr12:100651362-100651648(-)$1	1	179	190	23.0980
.........((	chr14:35402632-35402843(-)$1	1	14	25	23.4901
...........	chr2:209129262-209129482(-)$1	1	0	11	22.6078
..((((....)	chr1:164823421-164823665(+)$1	1	151	162	22.7058
)))))))))..	chr1:115033318-115033522(+)$1	1	146	157	23.1960
...........	chrX:64905672-64905882(+)$1	1	118	129	22.5098
)))........	chr15:52176709-52176951(+)$1	1	137	148	26.8235
((.(((((...	chr18:28962249-28962501(+)$1	1	140	151	22.9019
((.........	chr14:50058854-50059074(-)$1	1	174	185	22.9999
)).........	chrX:85274599-85274817(+)$1	1	115	126	18.6862
((...((((((	chr15:64737228-64737452(-)$1	1	120	131	22.9019
)..........	chr2:128556462-128556687(-)$1	1	206	217	26.8235
)...).)....	chr2:206890280-206890519(+)$1	1	137	148	18.5882
)))))..))).	chr18:12760678-12760898(+)$1	1	147	158	19.8627
).........(	chr4:89251232-89251459(-)$1	1	128	139	22.7058
...........	chr1:233807393-233807600(+)$1	1	19	30	23.0980
...........	chr1:185226949-185227169(-)$1	1	123	134	26.8235

#PSSM
u : 0.56	U : 0.29	c : 0.05	a : 0.03	G : 0.01	A : 0.01	
u : 0.58	U : 0.29	c : 0.05	a : 0.01	G : 0.01	A : 0.01	
A : 0.52	a : 0.29	u : 0.09	U : 0.05	G : 0.01	
A : 0.62	a : 0.37	
A : 0.54	a : 0.41	g : 0.01	G : 0.01	
A : 0.45	a : 0.41	U : 0.05	G : 0.05	g : 0.01	
A : 0.49	a : 0.43	G : 0.03	g : 0.01	C : 0.01	
A : 0.58	a : 0.31	g : 0.03	c : 0.03	u : 0.01	
A : 0.45	a : 0.37	C : 0.07	U : 0.03	u : 0.01	g : 0.01	G : 0.01	
A : 0.47	a : 0.37	G : 0.07	g : 0.03	C : 0.01	U : 0.01	
A : 0.50	a : 0.37	U : 0.03	c : 0.01	G : 0.01	C : 0.01	u : 0.01	

#score	1118.4901960784312
#seq	51
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF469SRC_SAFB_transcript_m2_run1.nuc.txt

#NT
GGAGG	chr11:65268019-65268226(+)$1	207	132	137	15.0000
GGAGG	chr21:47560220-47560544(-)$1	324	118	123	15.0000
GGAGG	chr17:166811-167096(-)$1	285	1	6	15.0000
GGAGG	chr7:157943587-157943876(-)$1	289	176	181	15.0000
GGAGG	chr7:157630226-157630519(-)$1	293	76	81	15.0000
ggagg	chr17:14323375-14323674(+)$1	299	125	130	15.0000
GGAGG	chr11:65268026-65268230(+)$1	204	125	130	15.0000
GGAGG	chr2:238488862-238489122(-)$1	260	78	83	15.0000
GGAGG	chr11:65267991-65268201(+)$1	210	160	165	15.0000
GGAGG	chr2:42426282-42426550(+)$1	268	148	153	15.0000
ggagg	chr2:238507061-238507312(-)$1	251	20	25	15.0000
ggagg	chr20:8493788-8494048(+)$1	260	109	114	15.0000
ggagg	chr8:101305270-101305574(-)$1	304	198	203	15.0000
GGAGG	chr16:89547133-89547430(-)$1	297	98	103	15.0000
GGAGG	chr16:87942785-87943081(-)$1	296	204	209	15.0000
GGAGG	chr6:159047122-159047377(+)$1	255	81	86	15.0000
GGAGG	chr17:164257-164535(-)$1	278	23	28	15.0000
ggagg	chr13:98015329-98015607(+)$1	278	113	118	15.0000
ggagg	chr15:85651308-85651656(+)$1	348	24	29	15.0000
ggagg	chr8:9629646-9629922(+)$1	276	130	135	15.0000
GGAGG	chr3:197243757-197244098(-)$1	341	53	58	15.0000
GGAGG	chr17:165313-165585(-)$1	272	100	105	15.0000
ggagg	chr8:9629524-9629813(+)$1	289	0	5	15.0000
GGAGG	chr6:1907070-1907344(-)$1	274	159	164	15.0000
ggagg	chr2:191076220-191076507(-)$1	287	123	128	15.0000
GGAGG	chr11:65267945-65268157(+)$1	212	206	211	15.0000
GGAGG	chr17:73889703-73889996(-)$1	293	15	20	15.0000
GGAGG	chr7:157664108-157664381(-)$1	273	80	85	15.0000
ggagg	chr7:158258707-158258988(-)$1	281	30	35	15.0000
GGAGG	chr7:130594123-130594528(-)$1	405	4	9	15.0000
GGAGG	chr8:13099138-13099411(-)$1	273	183	188	15.0000
ggagg	chr6:3319169-3319419(-)$1	250	51	56	15.0000
GGAGG	chr17:164996-165264(-)$1	268	23	28	15.0000
GGAGG	chr2:238490641-238490921(-)$1	280	240	245	15.0000
GGAGG	chr11:65267976-65268183(+)$1	207	175	180	15.0000
ggagg	chr12:26941401-26941677(-)$1	276	23	28	15.0000
GGAGG	chr1:94063403-94063650(+)$1	247	37	42	15.0000
ggagg	chr20:36134504-36134802(-)$1	298	122	127	15.0000
GGAGG	chr21:47560043-47560305(-)$1	262	80	85	15.0000
ggagg	chr20:8412619-8412872(+)$1	253	76	81	15.0000
ggagg	chr5:95238603-95238855(-)$1	252	107	112	15.0000
GGAGG	chr3:197243380-197243639(-)$1	259	7	12	15.0000
GGAGG	chr2:201296869-201297161(+)$1	292	100	105	15.0000
GGAGG	chr3:186332342-186332593(+)$1	251	14	19	15.0000
ggagg	chr2:188355876-188356170(-)$1	294	88	93	15.0000
GGAGG	chr11:65268065-65268269(+)$1	204	86	91	15.0000
GGAGG	chr11:65268076-65268281(+)$1	205	75	80	15.0000
GGAGG	chr17:164082-164327(-)$1	245	58	63	15.0000
ggagg	chr1:234544223-234544553(-)$1	330	54	59	15.0000
GGAGG	chr7:158258344-158258604(-)$1	260	167	172	15.0000
GGAGG	chr6:2271991-2272257(+)$1	266	143	148	15.0000
GGAGG	chr7:158352236-158352493(-)$1	257	68	73	15.0000
GGAGG	chr17:165791-166051(-)$1	260	16	21	15.0000
ggagg	chr2:238487816-238488103(-)$1	287	12	17	15.0000
ggagg	chr12:125269485-125269778(-)$1	293	46	51	15.0000
GGAGG	chr5:95296418-95296742(-)$1	324	162	167	15.0000
GGAGG	chr7:157943415-157943703(-)$1	288	3	8	15.0000
ggagg	chr22:36625135-36625440(-)$1	305	34	39	15.0000

#otherMatches

#Struct PSSM
::::c	chr17:165663-165886(-)$1	223	3	8	15.0000
___AY	chr11:65268019-65268226(+)$1	207	132	137	15.0000
ffff[	chr21:47560220-47560544(-)$1	324	118	123	15.0000
::::D	chr17:166811-167096(-)$1	285	1	6	15.0000
::::f	chr7:157943587-157943876(-)$1	289	176	181	15.0000
eee[a	chr7:157630226-157630519(-)$1	293	76	81	15.0000
{DDDD	chr17:14323375-14323674(+)$1	299	125	130	15.0000
c[a[b	chr11:65268026-65268230(+)$1	204	125	130	15.0000
a[ccc	chr2:238488862-238489122(-)$1	260	78	83	15.0000
___AY	chr11:65267991-65268201(+)$1	210	160	165	15.0000
ddddb	chr2:42426282-42426550(+)$1	268	148	153	15.0000
333bb	chr2:238507061-238507312(-)$1	251	20	25	15.0000
ipppp	chr20:8493788-8494048(+)$1	260	109	114	15.0000
hhhhh	chr8:101305270-101305574(-)$1	304	198	203	15.0000
ooooo	chr16:89547133-89547430(-)$1	297	98	103	15.0000
bb]ff	chr16:87942785-87943081(-)$1	296	204	209	15.0000
""ddd	chr6:159047122-159047377(+)$1	255	81	86	15.0000
crrrr	chr17:164257-164535(-)$1	278	23	28	15.0000
:FFFF	chr13:98015329-98015607(+)$1	278	113	118	15.0000
:ffff	chr15:85651308-85651656(+)$1	348	24	29	15.0000
EEEFF	chr8:9629646-9629922(+)$1	276	130	135	15.0000
EEEE:	chr3:197243757-197244098(-)$1	341	53	58	15.0000
b4444	chr17:165313-165585(-)$1	272	100	105	15.0000
:::::	chr8:9629524-9629813(+)$1	289	0	5	15.0000
fffff	chr6:1907070-1907344(-)$1	274	159	164	15.0000
fffff	chr2:191076220-191076507(-)$1	287	123	128	15.0000
BYYBB	chr11:65267945-65268157(+)$1	212	206	211	15.0000
:::dd	chr17:73889703-73889996(-)$1	293	15	20	15.0000
ee:::	chr7:157664108-157664381(-)$1	273	80	85	15.0000
E{FFF	chr7:158258707-158258988(-)$1	281	30	35	15.0000
:::::	chr7:130594123-130594528(-)$1	405	4	9	15.0000
ggggg	chr8:13099138-13099411(-)$1	273	183	188	15.0000
oooa]	chr6:3319169-3319419(-)$1	250	51	56	15.0000
b!!a[	chr17:164996-165264(-)$1	268	23	28	15.0000
CCCDD	chr2:238490641-238490921(-)$1	280	240	245	15.0000
c[a[b	chr11:65267976-65268183(+)$1	207	175	180	15.0000
fnnnn	chr12:26941401-26941677(-)$1	276	23	28	15.0000
DKKDD	chr1:94063403-94063650(+)$1	247	37	42	15.0000
FFFFF	chr20:36134504-36134802(-)$1	298	122	127	15.0000
hhhhc	chr21:47560043-47560305(-)$1	262	80	85	15.0000
e]eee	chr20:8412619-8412872(+)$1	253	76	81	15.0000
!a[cc	chr5:95238603-95238855(-)$1	252	107	112	15.0000
:::::	chr3:197243380-197243639(-)$1	259	7	12	15.0000
GGG{C	chr2:201296869-201297161(+)$1	292	100	105	15.0000
DD:::	chr3:186332342-186332593(+)$1	251	14	19	15.0000
dd:bb	chr2:188355876-188356170(-)$1	294	88	93	15.0000
FFF::	chr11:65268065-65268269(+)$1	204	86	91	15.0000
FFF::	chr11:65268076-65268281(+)$1	205	75	80	15.0000
cssss	chr17:164082-164327(-)$1	245	58	63	15.0000
{GGGG	chr1:234544223-234544553(-)$1	330	54	59	15.0000
e$$$$	chr7:158258344-158258604(-)$1	260	167	172	15.0000
hhhhh	chr6:2271991-2272257(+)$1	266	143	148	15.0000
fffff	chr7:158352236-158352493(-)$1	257	68	73	15.0000
BKKA{	chr17:165791-166051(-)$1	260	16	21	15.0000
=====	chr2:238487816-238488103(-)$1	287	12	17	15.0000
ff!!d	chr12:125269485-125269778(-)$1	293	46	51	15.0000
a[ccc	chr5:95296418-95296742(-)$1	324	162	167	15.0000
:::::	chr7:157943415-157943703(-)$1	288	3	8	15.0000
&&&&d	chr22:36625135-36625440(-)$1	305	34	39	15.0000

#DB
....(	chr17:165663-165886(-)$1	1	3	8	15.0000
...).	chr11:65268019-65268226(+)$1	1	132	137	15.0000
((((.	chr21:47560220-47560544(-)$1	1	118	123	15.0000
....(	chr17:166811-167096(-)$1	1	1	6	15.0000
....(	chr7:157943587-157943876(-)$1	1	176	181	15.0000
(((.(	chr7:157630226-157630519(-)$1	1	76	81	15.0000
.((((	chr17:14323375-14323674(+)$1	1	125	130	15.0000
(.(.(	chr11:65268026-65268230(+)$1	1	125	130	15.0000
(.(((	chr2:238488862-238489122(-)$1	1	78	83	15.0000
...).	chr11:65267991-65268201(+)$1	1	160	165	15.0000
)))))	chr2:42426282-42426550(+)$1	1	148	153	15.0000
...))	chr2:238507061-238507312(-)$1	1	20	25	15.0000
(....	chr20:8493788-8494048(+)$1	1	109	114	15.0000
(((((	chr8:101305270-101305574(-)$1	1	198	203	15.0000
.....	chr16:89547133-89547430(-)$1	1	98	103	15.0000
)).))	chr16:87942785-87943081(-)$1	1	204	209	15.0000
..(((	chr6:159047122-159047377(+)$1	1	81	86	15.0000
(....	chr17:164257-164535(-)$1	1	23	28	15.0000
.))))	chr13:98015329-98015607(+)$1	1	113	118	15.0000
.((((	chr15:85651308-85651656(+)$1	1	24	29	15.0000
(((((	chr8:9629646-9629922(+)$1	1	130	135	15.0000
((((.	chr3:197243757-197244098(-)$1	1	53	58	15.0000
)....	chr17:165313-165585(-)$1	1	100	105	15.0000
.....	chr8:9629524-9629813(+)$1	1	0	5	15.0000
)))))	chr6:1907070-1907344(-)$1	1	159	164	15.0000
(((((	chr2:191076220-191076507(-)$1	1	123	128	15.0000
)..))	chr11:65267945-65268157(+)$1	1	206	211	15.0000
...((	chr17:73889703-73889996(-)$1	1	15	20	15.0000
))...	chr7:157664108-157664381(-)$1	1	80	85	15.0000
(.(((	chr7:158258707-158258988(-)$1	1	30	35	15.0000
.....	chr7:130594123-130594528(-)$1	1	4	9	15.0000
)))))	chr8:13099138-13099411(-)$1	1	183	188	15.0000
...).	chr6:3319169-3319419(-)$1	1	51	56	15.0000
(..(.	chr17:164996-165264(-)$1	1	23	28	15.0000
)))))	chr2:238490641-238490921(-)$1	1	240	245	15.0000
(.(.(	chr11:65267976-65268183(+)$1	1	175	180	15.0000
(....	chr12:26941401-26941677(-)$1	1	23	28	15.0000
(..((	chr1:94063403-94063650(+)$1	1	37	42	15.0000
(((((	chr20:36134504-36134802(-)$1	1	122	127	15.0000
))))(	chr21:47560043-47560305(-)$1	1	80	85	15.0000
).)))	chr20:8412619-8412872(+)$1	1	76	81	15.0000
.(.((	chr5:95238603-95238855(-)$1	1	107	112	15.0000
.....	chr3:197243380-197243639(-)$1	1	7	12	15.0000
(((.(	chr2:201296869-201297161(+)$1	1	100	105	15.0000
((...	chr3:186332342-186332593(+)$1	1	14	19	15.0000
)).((	chr2:188355876-188356170(-)$1	1	88	93	15.0000
(((..	chr11:65268065-65268269(+)$1	1	86	91	15.0000
(((..	chr11:65268076-65268281(+)$1	1	75	80	15.0000
(....	chr17:164082-164327(-)$1	1	58	63	15.0000
.((((	chr1:234544223-234544553(-)$1	1	54	59	15.0000
(....	chr7:158258344-158258604(-)$1	1	167	172	15.0000
)))))	chr6:2271991-2272257(+)$1	1	143	148	15.0000
)))))	chr7:158352236-158352493(-)$1	1	68	73	15.0000
(..(.	chr17:165791-166051(-)$1	1	16	21	15.0000
(((((	chr2:238487816-238488103(-)$1	1	12	17	15.0000
((..(	chr12:125269485-125269778(-)$1	1	46	51	15.0000
(.(((	chr5:95296418-95296742(-)$1	1	162	167	15.0000
.....	chr7:157943415-157943703(-)$1	1	3	8	15.0000
....(	chr22:36625135-36625440(-)$1	1	34	39	15.0000

#PSSM
G : 0.66	g : 0.33	
G : 0.66	g : 0.33	
A : 0.66	a : 0.33	
G : 0.66	g : 0.33	
G : 0.66	g : 0.33	

#score	885.0
#seq	59
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_CDS_m2_run2.nuc.txt

#NT
caccucccuuccccaccccc	chr19:5231496-5231754(-)$1	258	84	104	23.2222
ccaccaccacccccaccgca	chr12:122252185-122252451(+)$1	266	15	35	28.5555
ccuccuccacccccaucacc	chr2:204305008-204305267(-)$1	259	136	156	31.2222
ccaucuccugucccuccccc	chr19:17346737-17347014(-)$1	277	45	65	20.4444
caccccccagcaccaccccu	chr17:2290535-2290888(-)$1	353	50	70	22.1111
CUUCCUCCUCCCCCAACCCU	chr12:57919842-57920120(+)$1	278	223	243	25.2222
CCGCCUCAUCCCCCACACCG	chr17:79686872-79687136(+)$1	264	153	173	22.6666
ACUCCCUCACCCCCAACCCC	chr16:67576740-67577096(+)$1	356	211	231	22.2222
UAUCAUCCACCCCCACCACC	chr1:33236754-33237030(+)$1	276	234	254	24.0000
CCUCCUCAGCCCCCACAGCC	chr16:28914903-28915222(+)$1	319	34	54	23.7777
CUGCCUCCAGCCCCUCCUUC	chr17:7751233-7751505(+)$1	272	188	208	24.4444
CUCCCGCCUCCCCCAUUUCC	chr9:37486314-37486721(+)$1	407	63	83	21.6666
GCCCCUCCAGCCCCACCUUC	chr9:96021607-96021939(+)$1	332	231	251	26.4444
CCUCCUCCACCCCCACCUCC	chr14:105173918-105174181(+)$1	263	225	245	36.5555
cccccaccgccuccaccucc	chr19:15355130-15355407(-)$1	277	74	94	28.2222
cccccuccucccuccccuca	chr19:56173680-56173987(+)$1	307	57	77	24.2222
CCUCCUCCACCCCCACCUCC	chr14:105174003-105174360(+)$1	357	140	160	36.5555
ccgccggcacccccaccacc	chr17:2298333-2298688(-)$1	355	83	103	28.1111
CCCCCUACACACCCAGCUCU	chr3:47452322-47452628(+)$1	306	1	21	21.6666
CUGCCUCCAGCCCCUCCUUC	chr17:7751305-7751583(+)$1	278	116	136	24.4444
CCUCCCCCAGCCCGGCCUCC	chr22:38051345-38051595(+)$1	250	158	178	24.3333
ACGCCUCUAUCCCCACCACC	chr12:49445638-49445912(-)$1	274	46	66	23.5555
CCCCCACCUUCCCCACCCCC	chr1:33236866-33237108(+)$1	242	98	118	29.7777
cccccucccgccgcaccgcc	chr3:184097895-184098252(+)$1	357	93	113	25.8888
ccccacccacccccuccccc	chr22:50687462-50687753(-)$1	291	84	104	27.8888
cugcggccccccccaccacc	chr16:30675648-30675931(+)$1	283	65	85	23.1111
CCUCCUGUACCCCCACCUCU	chr7:73011732-73011971(-)$1	239	21	41	25.6666
cacaccccacccccaccccc	chr2:71159720-71160005(+)$1	285	43	63	27.2222
cacccucuccccccaccccc	chr3:47459201-47459466(-)$1	265	23	43	27.2222
ccccuuccugccccugcucc	chr1:16262381-16262679(+)$1	298	116	136	23.4444
CCGCCUCCUCCUCCUCCUCC	chr12:56558123-56558412(-)$1	289	13	33	28.4444
CCCCCACCUGCCCCACCUCU	chr6:138752376-138752624(-)$1	248	200	220	28.2222
CCAAUUCCACCCCCACCACC	chr11:61183552-61183825(-)$1	273	4	24	26.5555
ccacccccacccacagcccc	chr7:4829665-4829963(+)$1	298	27	47	25.3333
ccucuucguccuccuccucc	chr16:30675503-30675810(+)$1	307	94	114	21.0000
ccaccaccaccaccCACCCC	chr3:12942671-12942964(-)$1	293	266	286	22.2222
CAGCCACAACCCCCACCCGC	chr19:15376190-15376477(-)$1	287	229	249	22.6666
CUGCCUCCCCCUCCAGCCCU	chr1:8420438-8420682(-)$1	244	2	22	20.2222
CCCCCCUCAGCCCCGCCCCA	chr22:38051529-38051787(+)$1	258	116	136	21.3333
ccaccuacucgcccaccucc	chr17:7417293-7417560(+)$1	267	72	92	25.8888
CCUGGGCCACCCCUACCCCC	chr6:33166980-33167258(-)$1	278	130	150	20.7777
UCUCCUCCAGCCCCUCCUAG	chr17:40947043-40947317(+)$1	274	249	269	19.9999
ccuccuccucccccuccucc	chr1:27736165-27736439(-)$1	274	85	105	32.6666
GCGCCUCCACCCCCACCUGU	chr16:30676530-30676774(+)$1	244	53	73	25.1111

#otherMatches

#Struct PSSM
zzzzzzzzzzzzffffff::	chr2:204305420-204305739(-)$1	319	107	127	27.4444
::::::::::::::::::::	chr19:5231496-5231754(-)$1	258	84	104	23.2222
^^^^^^^^^^^^^^^^^eee	chr12:122252185-122252451(+)$1	266	15	35	28.5555
"""ccc%%%%%%dddd####	chr2:204305008-204305267(-)$1	259	136	156	31.2222
:bbnnnnnbb:::DDDD{FF	chr19:17346737-17347014(-)$1	277	45	65	20.4444
^^^^^^^eeeee]a:::DDD	chr17:2290535-2290888(-)$1	353	50	70	22.1111
qqqa]bb333ffffffdddd	chr12:57919842-57920120(+)$1	278	223	243	25.2222
EEEEE@@@@@@@@@@@@CCC	chr17:79686872-79687136(+)$1	264	153	173	22.6666
dddd::::::::::::::::	chr16:67576740-67577096(+)$1	356	211	231	22.2222
::::::::::::::::::::	chr1:33236754-33237030(+)$1	276	234	254	24.0000
ee]bb22bb88888888fff	chr16:28914903-28915222(+)$1	319	34	54	23.7777
DDDDdddd[bb[ccc%%%%%	chr17:7751233-7751505(+)$1	272	188	208	24.4444
:::::BB{DDDD::::::::	chr9:37486314-37486721(+)$1	407	63	83	21.6666
IIIIIILLLDDDD:::gggg	chr9:96021607-96021939(+)$1	332	231	251	26.4444
::::::::::::::::::::	chr14:105173918-105174181(+)$1	263	225	245	36.5555
ooooooa]bb:::EEEEE::	chr19:15355130-15355407(-)$1	277	74	94	28.2222
::::::::::::::::::::	chr19:56173680-56173987(+)$1	307	57	77	24.2222
iiiiiiiii!!bb!!bb[dd	chr14:105174003-105174360(+)$1	357	140	160	36.5555
ooeeeee:::::::::::::	chr17:2298333-2298688(-)$1	355	83	103	28.1111
:::::::::::::::CCC::	chr3:47452322-47452628(+)$1	306	1	21	21.6666
JJJJJJJ::ccc####ffff	chr17:7751305-7751583(+)$1	278	116	136	24.4444
cctttttttttttccc::::	chr22:38051345-38051595(+)$1	250	158	178	24.3333
eebb[bbwwwwwwwwwwwww	chr12:49445638-49445912(-)$1	274	46	66	23.5555
c!!ggggggg++++++++++	chr1:33236866-33237108(+)$1	242	98	118	29.7777
dqqqqqqqqdddd4444ccc	chr3:184097895-184098252(+)$1	357	93	113	25.8888
:::::::::::::::::ggg	chr22:50687462-50687753(-)$1	291	84	104	27.8888
{BB{HHHHHHHHKKCCC{DD	chr16:30675648-30675931(+)$1	283	65	85	23.1111
'''dddd%%%%%%eeeee!!	chr7:73011732-73011971(-)$1	239	21	41	25.6666
::::::::::::::::::::	chr2:71159720-71160005(+)$1	285	43	63	27.2222
::::::::::::::::::::	chr3:47459201-47459466(-)$1	265	23	43	27.2222
444ffffff22eeeee333d	chr1:16262381-16262679(+)$1	298	116	136	23.4444
{DDDD:::::::::::::::	chr12:56558123-56558412(-)$1	289	13	33	28.4444
:::::::::::::::::bb[	chr6:138752376-138752624(-)$1	248	200	220	28.2222
:::::::::::::::::DDD	chr11:61183552-61183825(-)$1	273	4	24	26.5555
d4444dddd::EEEEE::::	chr7:4829665-4829963(+)$1	298	27	47	25.3333
::::::::::::::::::::	chr16:30675503-30675810(+)$1	307	94	114	21.0000
::::::::::::::::::::	chr3:12942671-12942964(-)$1	293	266	286	22.2222
ooa]ccc:::::::::::BB	chr19:15376190-15376477(-)$1	287	229	249	22.6666
:::::::::GGGGGGGLLLE	chr1:8420438-8420682(-)$1	244	2	22	20.2222
555ggggggg22eeeee]dd	chr22:38051529-38051787(+)$1	258	116	136	21.3333
D:::::::::cccvvvvvvv	chr17:7417293-7417560(+)$1	267	72	92	25.8888
ffffff::::::::::::::	chr6:33166980-33167258(-)$1	278	130	150	20.7777
::::::::::::::::::DD	chr17:40947043-40947317(+)$1	274	249	269	19.9999
lhhhhhhhh:::::::::::	chr1:27736165-27736439(-)$1	274	85	105	32.6666
ddJJJJJJJJJJ@@@@@@@@	chr16:30676530-30676774(+)$1	244	53	73	25.1111

#DB
............))))))..	chr2:204305420-204305739(-)$1	1	107	127	27.4444
....................	chr19:5231496-5231754(-)$1	1	84	104	23.2222
.................)))	chr12:122252185-122252451(+)$1	1	15	35	28.5555
...(((......((((....	chr2:204305008-204305267(-)$1	1	136	156	31.2222
.((.....))...((((.((	chr19:17346737-17347014(-)$1	1	45	65	20.4444
.......))))).)...(((	chr17:2290535-2290888(-)$1	1	50	70	22.1111
...).))...))))))((((	chr12:57919842-57920120(+)$1	1	223	243	25.2222
)))))............)))	chr17:79686872-79687136(+)$1	1	153	173	22.6666
))))................	chr16:67576740-67577096(+)$1	1	211	231	22.2222
....................	chr1:33236754-33237030(+)$1	1	234	254	24.0000
)).))..))........)))	chr16:28914903-28915222(+)$1	1	34	54	23.7777
))))((((.((.(((.....	chr17:7751233-7751505(+)$1	1	188	208	24.4444
.....((.((((........	chr9:37486314-37486721(+)$1	1	63	83	21.6666
((((((...((((...((((	chr9:96021607-96021939(+)$1	1	231	251	26.4444
....................	chr14:105173918-105174181(+)$1	1	225	245	36.5555
......).))...(((((..	chr19:15355130-15355407(-)$1	1	74	94	28.2222
....................	chr19:56173680-56173987(+)$1	1	57	77	24.2222
(((((((((..((..((.((	chr14:105174003-105174360(+)$1	1	140	160	36.5555
..))))).............	chr17:2298333-2298688(-)$1	1	83	103	28.1111
...............(((..	chr3:47452322-47452628(+)$1	1	1	21	21.6666
(((((((..(((....((((	chr17:7751305-7751583(+)$1	1	116	136	24.4444
((...........)))....	chr22:38051345-38051595(+)$1	1	158	178	24.3333
))((.((.............	chr12:49445638-49445912(-)$1	1	46	66	23.5555
(..(((((((..........	chr1:33236866-33237108(+)$1	1	98	118	29.7777
(........))))....)))	chr3:184097895-184098252(+)$1	1	93	113	25.8888
.................(((	chr22:50687462-50687753(-)$1	1	84	104	27.8888
.((.((((((((..(((.((	chr16:30675648-30675931(+)$1	1	65	85	23.1111
...((((......(((((..	chr7:73011732-73011971(-)$1	1	21	41	25.6666
....................	chr2:71159720-71160005(+)$1	1	43	63	27.2222
....................	chr3:47459201-47459466(-)$1	1	23	43	27.2222
...))))))..)))))...)	chr1:16262381-16262679(+)$1	1	116	136	23.4444
.((((...............	chr12:56558123-56558412(-)$1	1	13	33	28.4444
.................((.	chr6:138752376-138752624(-)$1	1	200	220	28.2222
.................(((	chr11:61183552-61183825(-)$1	1	4	24	26.5555
)....))))..(((((....	chr7:4829665-4829963(+)$1	1	27	47	25.3333
....................	chr16:30675503-30675810(+)$1	1	94	114	21.0000
....................	chr3:12942671-12942964(-)$1	1	266	286	22.2222
..).)))...........))	chr19:15376190-15376477(-)$1	1	229	249	22.6666
.........(((((((...(	chr1:8420438-8420682(-)$1	1	2	22	20.2222
...)))))))..))))).))	chr22:38051529-38051787(+)$1	1	116	136	21.3333
(.........(((.......	chr17:7417293-7417560(+)$1	1	72	92	25.8888
))))))..............	chr6:33166980-33167258(-)$1	1	130	150	20.7777
..................))	chr17:40947043-40947317(+)$1	1	249	269	19.9999
.))))))))...........	chr1:27736165-27736439(-)$1	1	85	105	32.6666
))))))))))))........	chr16:30676530-30676774(+)$1	1	53	73	25.1111

#PSSM
C : 0.44	c : 0.42	A : 0.04	U : 0.04	G : 0.04	
C : 0.42	c : 0.31	U : 0.11	a : 0.08	A : 0.04	u : 0.02	
U : 0.22	c : 0.20	G : 0.17	C : 0.13	a : 0.11	u : 0.06	A : 0.04	g : 0.04	
C : 0.51	c : 0.37	A : 0.04	u : 0.02	a : 0.02	G : 0.02	
C : 0.51	c : 0.31	u : 0.06	A : 0.02	a : 0.02	g : 0.02	U : 0.02	G : 0.02	
U : 0.37	u : 0.20	c : 0.11	A : 0.08	a : 0.06	C : 0.06	G : 0.04	g : 0.04	
C : 0.48	c : 0.37	U : 0.04	g : 0.02	A : 0.02	G : 0.02	a : 0.02	
C : 0.46	c : 0.37	A : 0.06	U : 0.04	u : 0.02	g : 0.02	
A : 0.37	a : 0.17	u : 0.15	U : 0.13	c : 0.06	C : 0.04	G : 0.02	g : 0.02	
C : 0.37	c : 0.31	G : 0.15	g : 0.08	U : 0.04	u : 0.02	
C : 0.55	c : 0.37	u : 0.02	A : 0.02	g : 0.02	
C : 0.53	c : 0.33	a : 0.04	u : 0.04	U : 0.04	
C : 0.57	c : 0.35	u : 0.02	g : 0.02	a : 0.02	
C : 0.53	c : 0.42	G : 0.02	U : 0.02	
A : 0.44	a : 0.26	u : 0.11	U : 0.08	G : 0.04	c : 0.02	C : 0.02	
C : 0.46	c : 0.33	A : 0.06	G : 0.04	g : 0.04	u : 0.02	U : 0.02	
C : 0.53	c : 0.39	A : 0.04	U : 0.02	
U : 0.31	C : 0.20	c : 0.15	u : 0.13	a : 0.06	A : 0.06	g : 0.04	G : 0.02	
C : 0.46	c : 0.39	U : 0.06	G : 0.04	A : 0.02	
C : 0.39	c : 0.33	U : 0.13	a : 0.04	G : 0.04	u : 0.02	A : 0.02	

#score	1141.7777777777776
#seq	45
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_transcript_m1_run1.nuc.txt

#NT
GGGAGCGGgggug	chr13:33590389-33590618(+)$1	229	88	101	20.9090
GGGGGCGGGGUGG	chr8:145107131-145107378(-)$1	247	31	44	25.8181
GGGAGCGGCGGGG	chr5:179248031-179248276(+)$1	245	122	135	19.9999
GGCGGCGGGCAGG	chr9:139560598-139560841(+)$1	243	65	78	19.9090
ggggguggggAGG	chr2:32583040-32583302(+)$1	262	92	105	25.2727
GGGGGAGGGGAAG	chr17:46653875-46654119(-)$1	244	189	202	21.5454
GGGAGCUGGGAGG	chr1:153918927-153919200(-)$1	273	140	153	22.7272
cggcggggggagg	chr16:24551209-24551452(+)$1	243	39	52	19.7272
GGGCGGUGGGAGG	chr21:45734190-45734457(+)$1	267	28	41	19.7272
GGGUGCGCGGUGG	chr2:172379370-172379634(+)$1	264	109	122	19.6363
GGGGGCGGGUAGG	chr12:109124501-109124760(-)$1	259	37	50	23.7272
GGGUGAGGGGACG	chr7:150779628-150779857(-)$1	229	53	66	20.0000
GCGGGCGGGGAAG	chr9:133455117-133455368(+)$1	251	84	97	20.6363
GGCGGCGGGGAGG	chr4:1873343-1873585(+)$1	242	9	22	24.4545
gggggcggggcgg	chr2:47402798-47403050(-)$1	252	82	95	26.0909
UGGUGGGGGGAGG	chrX:152954279-152954567(+)$1	288	213	226	19.5454
gggcgcgggggcg	chr22:20849721-20850070(-)$1	349	132	145	20.7272
GGgggcggagggg	chr11:64073169-64073454(+)$1	285	43	56	21.2727
aggagcggggcgg	chr3:195635971-195636267(-)$1	296	28	41	20.4545
GGGCUCGGGGGGG	chr13:92001085-92001371(+)$1	286	86	99	20.0909
aggcgcggggagg	chr15:64752848-64753083(+)$1	235	18	31	22.6363
GGGUGUGUGGAGG	chr9:136132003-136132269(-)$1	266	141	154	19.0909
GGGGGAGGUGAGG	chr11:75283135-75283404(+)$1	269	66	79	20.7272
gggggcggggagg	chr22:17090956-17091199(+)$1	243	199	212	28.3636
cggcgcggggcgg	chr21:44394973-44395208(+)$1	235	178	191	20.3636
GGGAGCGGGGAGG	chr2:178077530-178077816(+)$1	286	129	142	27.0909
gggggcggggagg	chr21:46494356-46494613(+)$1	257	100	113	28.3636
GGGGCGGGGGAGG	chr7:5634092-5634354(+)$1	262	67	80	21.1818
ggccgcggggagg	chr6:158244445-158244730(+)$1	285	103	116	23.0909
GGGUGUggggaug	chr7:23454306-23454552(-)$1	246	114	127	20.1818
gggggccgggagg	chr7:106809585-106809891(+)$1	306	274	287	23.9999
gggggcgggggcg	chr10:33246745-33247046(-)$1	301	94	107	22.0909
GCgggcggggcgg	chr13:92000154-92000448(+)$1	294	118	131	21.9999
GGGUGCGGGGCGC	chr4:99849535-99849808(-)$1	273	33	46	19.9999
GGGAUCGGGGAAG	chr1:54871251-54871488(-)$1	237	67	80	19.0909
GCGGGCGGGGAGG	chr1:185014751-185015038(+)$1	287	39	52	24.2727
GGGUGGGGGGUGG	chrX:53710644-53710902(-)$1	258	93	106	21.4545
GCGGGCCGGGAGG	chr13:92000572-92000888(+)$1	316	124	137	19.9090
GGGCCCGGGGUGG	chr16:89556380-89556604(-)$1	224	190	203	20.1818
GGGCGUGGGGAGG	chr17:8533100-8533345(-)$1	245	104	117	23.9090
GGGAGCAGGGAGG	chr14:102228219-102228449(+)$1	230	66	79	22.6363
GGUGGCGGUGAGG	chr5:170814956-170815236(+)$1	280	95	108	19.7272
GGGAGCGGGGAGC	chr3:41241218-41241473(+)$1	255	63	76	22.4545
GGGUGCGGGGUUG	chr1:1821785-1822022(-)$1	237	23	36	20.7272
Gggggcggggcgg	chr16:85645781-85646038(+)$1	257	65	78	26.0909
gggagcggggcag	chr21:44846348-44846606(-)$1	258	85	98	21.1818
GGCGGUGGGGAGG	chr7:77166711-77166970(+)$1	259	0	13	21.3636
ggggccggggagg	chr2:54197784-54198040(-)$1	256	67	80	24.0909
GGGAGGGGGGCGG	chr20:57467539-57467790(+)$1	251	77	90	21.9090
GUGCGCGGGGCGG	chr19:41770609-41770858(+)$1	249	100	113	20.3636
GGGGGCGGGCUGG	chr11:65190356-65190613(+)$1	257	24	37	21.2727
Gagggaggggagg	chr6:86352565-86352819(-)$1	254	69	82	20.8181
GGCAGCGGGGAUG	chr16:31044940-31045257(+)$1	317	228	241	19.5454
GGGUGGGGGGAGG	chr17:7476169-7476429(+)$1	260	123	136	23.9999

#otherMatches

#Struct PSSM
====[eeeeeeee	chr3:9438285-9438532(-)$1	247	86	99	24.1818
DDD}JJJJJJJJJ	chr13:33590389-33590618(+)$1	229	88	101	20.9090
mmmmccc::GGGG	chr8:145107131-145107378(-)$1	247	31	44	25.8181
JJJJJJJJJIIII	chr5:179248031-179248276(+)$1	245	122	135	19.9999
[bbeeeeebb[bb	chr9:139560598-139560841(+)$1	243	65	78	19.9090
{BB{BBKKA{DDD	chr2:32583040-32583302(+)$1	262	92	105	25.2727
iiiiiiiii]a::	chr17:46653875-46654119(-)$1	244	189	202	21.5454
f"""ccc[a!!bb	chr1:153918927-153919200(-)$1	273	140	153	22.7272
iiiiiiiiieeee	chr16:24551209-24551452(+)$1	243	39	52	19.7272
333ggggggg:::	chr21:45734190-45734457(+)$1	267	28	41	19.7272
Gccceeeeepppp	chr2:172379370-172379634(+)$1	264	109	122	19.6363
!!ffffffbb###	chr12:109124501-109124760(-)$1	259	37	50	23.7272
eeeee::a[dddd	chr7:150779628-150779857(-)$1	229	53	66	20.0000
f[dddd%%%%%%b	chr9:133455117-133455368(+)$1	251	84	97	20.6363
C{BB{BB::::::	chr4:1873343-1873585(+)$1	242	9	22	24.4545
f]a:hhhhhhhho	chr2:47402798-47403050(-)$1	252	82	95	26.0909
eehhhhhhhh:JJ	chrX:152954279-152954567(+)$1	288	213	226	19.5454
cc[ffffff!!dd	chr22:20849721-20850070(-)$1	349	132	145	20.7272
peeeee4444bb]	chr11:64073169-64073454(+)$1	285	43	56	21.2727
2eeeee:BB{A{D	chr3:195635971-195636267(-)$1	296	28	41	20.4545
ll===========	chr13:92001085-92001371(+)$1	286	86	99	20.0909
$ccc[a[bb$$$$	chr15:64752848-64753083(+)$1	235	18	31	22.6363
JJJJJJJJJ:eee	chr9:136132003-136132269(-)$1	266	141	154	19.0909
JJJJJ{A{A{FFF	chr11:75283135-75283404(+)$1	269	66	79	20.7272
JJJJJJJ::::::	chr22:17090956-17091199(+)$1	243	199	212	28.3636
=[bbnnnnnbb]=	chr21:44394973-44395208(+)$1	235	178	191	20.3636
iiiiiiiddddff	chr2:178077530-178077816(+)$1	286	129	142	27.0909
iiiiiiiii22bb	chr21:46494356-46494613(+)$1	257	100	113	28.3636
=============	chr7:5634092-5634354(+)$1	262	67	80	21.1818
JJJJJJJJJLLLA	chr6:158244445-158244730(+)$1	285	103	116	23.0909
eee[bb[ffffff	chr7:23454306-23454552(-)$1	246	114	127	20.1818
eee]ddddHHHHH	chr7:106809585-106809891(+)$1	306	274	287	23.9999
GGGGGG{HHHHHH	chr10:33246745-33247046(-)$1	301	94	107	22.0909
HHHHHHHddddoo	chr13:92000154-92000448(+)$1	294	118	131	21.9999
dmmmmdddd]a:c	chr4:99849535-99849808(-)$1	273	33	46	19.9999
bb22=========	chr1:54871251-54871488(-)$1	237	67	80	19.0909
DDDD{EEEEE{DD	chr1:185014751-185015038(+)$1	287	39	52	24.2727
dddd"""bb[ddd	chrX:53710644-53710902(-)$1	258	93	106	21.4545
ee22dddd333hh	chr13:92000572-92000888(+)$1	316	124	137	19.9090
EEEEEFFFFFF}A	chr16:89556380-89556604(-)$1	224	190	203	20.1818
f]bb88888888e	chr17:8533100-8533345(-)$1	245	104	117	23.9090
YEEEEE::bb[ff	chr14:102228219-102228449(+)$1	230	66	79	22.6363
]bb22dddd:CCC	chr5:170814956-170815236(+)$1	280	95	108	19.7272
rrrrrrrrrbb]g	chr3:41241218-41241473(+)$1	255	63	76	22.4545
bb:eeeee[bbnn	chr1:1821785-1822022(-)$1	237	23	36	20.7272
fff]ccc333a]c	chr16:85645781-85646038(+)$1	257	65	78	26.0909
ddd!!ffffff[a	chr21:44846348-44846606(-)$1	258	85	98	21.1818
:eeeeexxxxxxx	chr7:77166711-77166970(+)$1	259	0	13	21.3636
c]dddd]a:::::	chr2:54197784-54198040(-)$1	256	67	80	24.0909
e[a$$$$$hhhhh	chr20:57467539-57467790(+)$1	251	77	90	21.9090
CCC}BB}A}DDDD	chr19:41770609-41770858(+)$1	249	100	113	20.3636
LLDDDDKKCCC{B	chr11:65190356-65190613(+)$1	257	24	37	21.2727
:::::::::::::	chr6:86352565-86352819(-)$1	254	69	82	20.8181
CCCYYGGGGGGG:	chr16:31044940-31045257(+)$1	317	228	241	19.5454
]ffffff:BB}GG	chr17:7476169-7476429(+)$1	260	123	136	23.9999

#DB
((((.((((((((	chr3:9438285-9438532(-)$1	1	86	99	24.1818
))).)))))))))	chr13:33590389-33590618(+)$1	1	88	101	20.9090
....)))..((((	chr8:145107131-145107378(-)$1	1	31	44	25.8181
(((((((((((((	chr5:179248031-179248276(+)$1	1	122	135	19.9999
.(((((((((.((	chr9:139560598-139560841(+)$1	1	65	78	19.9090
.((.((..(.(((	chr2:32583040-32583302(+)$1	1	92	105	25.2727
))))))))).)..	chr17:46653875-46654119(-)$1	1	189	202	21.5454
(...(((.(..((	chr1:153918927-153919200(-)$1	1	140	153	22.7272
(((((((((((((	chr16:24551209-24551452(+)$1	1	39	52	19.7272
...)))))))...	chr21:45734190-45734457(+)$1	1	28	41	19.7272
(((((((((....	chr2:172379370-172379634(+)$1	1	109	122	19.6363
..((((((((...	chr12:109124501-109124760(-)$1	1	37	50	23.7272
)))))..(.((((	chr7:150779628-150779857(-)$1	1	53	66	20.0000
(.((((......(	chr9:133455117-133455368(+)$1	1	84	97	20.6363
(.((.((......	chr4:1873343-1873585(+)$1	1	9	22	24.4545
).).((((((((.	chr2:47402798-47403050(-)$1	1	82	95	26.0909
)))))))))).))	chrX:152954279-152954567(+)$1	1	213	226	19.5454
((.((((((..((	chr22:20849721-20850070(-)$1	1	132	145	20.7272
.)))))....)).	chr11:64073169-64073454(+)$1	1	43	56	21.2727
.))))).((.(.(	chr3:195635971-195636267(-)$1	1	28	41	20.4545
..)))))))))))	chr13:92001085-92001371(+)$1	1	86	99	20.0909
.(((.(.((....	chr15:64752848-64753083(+)$1	1	18	31	22.6363
))))))))).(((	chr9:136132003-136132269(-)$1	1	141	154	19.0909
(((((.(.(.(((	chr11:75283135-75283404(+)$1	1	66	79	20.7272
)))))))......	chr22:17090956-17091199(+)$1	1	199	212	28.3636
(.((.....)).)	chr21:44394973-44395208(+)$1	1	178	191	20.3636
(((((((((((((	chr2:178077530-178077816(+)$1	1	129	142	27.0909
)))))))))..))	chr21:46494356-46494613(+)$1	1	100	113	28.3636
)))))))))))))	chr7:5634092-5634354(+)$1	1	67	80	21.1818
(((((((((...(	chr6:158244445-158244730(+)$1	1	103	116	23.0909
(((.((.((((((	chr7:23454306-23454552(-)$1	1	114	127	20.1818
))).)))))))))	chr7:106809585-106809891(+)$1	1	274	287	23.9999
((((((.((((((	chr10:33246745-33247046(-)$1	1	94	107	22.0909
(((((((((((..	chr13:92000154-92000448(+)$1	1	118	131	21.9999
(....)))).).(	chr4:99849535-99849808(-)$1	1	33	46	19.9999
))..)))))))))	chr1:54871251-54871488(-)$1	1	67	80	19.0909
((((.(((((.((	chr1:185014751-185015038(+)$1	1	39	52	24.2727
((((...((.(((	chrX:53710644-53710902(-)$1	1	93	106	21.4545
))..))))...))	chr13:92000572-92000888(+)$1	1	124	137	19.9090
))))))))))).)	chr16:89556380-89556604(-)$1	1	190	203	20.1818
).))........)	chr17:8533100-8533345(-)$1	1	104	117	23.9090
.)))))..((.((	chr14:102228219-102228449(+)$1	1	66	79	22.6363
.))..)))).(((	chr5:170814956-170815236(+)$1	1	95	108	19.7272
.........)).)	chr3:41241218-41241473(+)$1	1	63	76	22.4545
)).(((((.((..	chr1:1821785-1822022(-)$1	1	23	36	20.7272
))).)))...).)	chr16:85645781-85646038(+)$1	1	65	78	26.0909
(((..((((((.(	chr21:44846348-44846606(-)$1	1	85	98	21.1818
.(((((.......	chr7:77166711-77166970(+)$1	1	0	13	21.3636
).)))).).....	chr2:54197784-54198040(-)$1	1	67	80	24.0909
(.(.....(((((	chr20:57467539-57467790(+)$1	1	77	90	21.9090
))).)).).))))	chr19:41770609-41770858(+)$1	1	100	113	20.3636
..((((..(((.(	chr11:65190356-65190613(+)$1	1	24	37	21.2727
.............	chr6:86352565-86352819(-)$1	1	69	82	20.8181
)))..))))))).	chr16:31044940-31045257(+)$1	1	228	241	19.5454
.)))))).)).))	chr17:7476169-7476429(+)$1	1	123	136	23.9999

#PSSM
G : 0.72	g : 0.18	c : 0.03	a : 0.03	U : 0.01	
G : 0.61	g : 0.27	C : 0.07	U : 0.01	a : 0.01	
G : 0.56	g : 0.30	C : 0.07	U : 0.03	c : 0.01	
G : 0.25	g : 0.20	A : 0.16	U : 0.16	c : 0.09	C : 0.09	a : 0.03	
G : 0.60	g : 0.30	U : 0.03	C : 0.03	c : 0.01	
C : 0.43	c : 0.27	G : 0.10	U : 0.07	A : 0.05	u : 0.01	g : 0.01	a : 0.01	
G : 0.58	g : 0.32	U : 0.03	c : 0.01	C : 0.01	A : 0.01	
G : 0.61	g : 0.34	C : 0.01	U : 0.01	
G : 0.58	g : 0.34	U : 0.03	C : 0.01	a : 0.01	
G : 0.58	g : 0.36	C : 0.03	U : 0.01	
A : 0.45	a : 0.16	U : 0.10	c : 0.10	g : 0.07	C : 0.05	G : 0.03	
G : 0.54	g : 0.25	A : 0.05	u : 0.03	c : 0.03	U : 0.03	C : 0.01	a : 0.01	
G : 0.61	g : 0.34	C : 0.03	

#score	1210.6363636363633
#seq	55
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_CDS_m2_run1.nuc.txt

#NT
GGAAA	chr2:128046135-128046423(-)$1	288	145	150	15.0000
GGAAA	chr1:67425261-67425468(+)$1	207	157	162	15.0000
GGAAA	chr12:93169703-93169961(-)$1	258	70	75	15.0000
GGAAA	chr1:59155947-59156190(-)$1	243	128	133	15.0000
GGAAA	chrX:53410041-53410274(-)$1	233	210	215	15.0000
GGAAA	chr11:111631584-111631847(-)$1	263	80	85	15.0000
GGAAA	chr21:34931947-34932182(+)$1	235	27	32	15.0000
GGAAA	chr3:183439724-183440009(+)$1	285	148	153	15.0000
GGAAA	chr14:24031460-24031717(-)$1	257	122	127	15.0000
GGAAA	chr12:133319709-133319968(-)$1	259	142	147	15.0000
GGAAA	chr5:139862122-139862347(+)$1	225	174	179	15.0000
GGAAA	chrX:153994518-153994756(+)$1	238	231	236	15.0000
GGAAA	chr17:49337988-49338210(+)$1	222	42	47	15.0000
GGAAA	chr16:18864974-18865251(-)$1	277	81	86	15.0000
GGAAA	chr9:127674089-127674397(-)$1	308	9	14	15.0000
GGAAA	chr4:89689034-89689259(-)$1	225	54	59	15.0000
GGAAA	chr1:39782819-39783083(+)$1	264	26	31	15.0000
GGAAA	chr1:67425268-67425506(+)$1	238	150	155	15.0000
GGAAA	chr2:55470536-55470788(-)$1	252	12	17	15.0000
GGAAA	chr19:50381360-50381599(+)$1	239	131	136	15.0000
GGAAA	chr3:47730800-47731014(-)$1	214	132	137	15.0000
GGAAA	chr1:100584505-100584751(-)$1	246	162	167	15.0000
GGAAA	chr16:14721936-14722209(-)$1	273	197	202	15.0000
GGAAA	chr1:23637593-23637815(-)$1	222	79	84	15.0000
GGAAA	chr11:3038257-3038532(-)$1	275	123	128	15.0000
GGAAA	chr22:18314511-18314760(-)$1	249	9	14	15.0000
GGAAA	chr13:46559327-46559689(-)$1	362	160	165	15.0000
GGAAA	chr1:59125661-59125927(-)$1	266	4	9	15.0000
ggaaa	chr11:110118431-110118652(-)$1	221	139	144	15.0000
GGAAA	chr15:50581579-50581877(-)$1	298	125	130	15.0000
GGAAA	chr20:36365677-36365932(+)$1	255	34	39	15.0000
GGAAA	chr2:27257907-27258148(+)$1	241	149	154	15.0000
GGAAA	chr7:138960742-138960954(+)$1	212	112	117	15.0000
GGAAA	chr5:137520485-137520731(+)$1	246	63	68	15.0000
GGAAA	chr2:238657804-238658072(+)$1	268	153	158	15.0000
GGAAA	chr9:127998774-127998997(-)$1	223	183	188	15.0000
GGAAA	chr3:142139849-142140096(-)$1	247	220	225	15.0000
GGAAA	chr11:71706441-71706699(+)$1	258	91	96	15.0000
GGAAA	chr1:110559188-110559431(+)$1	243	132	137	15.0000
GGAAA	chr1:94336219-94336449(-)$1	230	162	167	15.0000
GGAAA	chr1:70758001-70758289(-)$1	288	56	61	15.0000
GGAAA	chr6:129962858-129963093(-)$1	235	181	186	15.0000
GGAAA	chr2:232577422-232577636(+)$1	214	150	155	15.0000
GGAAA	chr13:37581012-37581307(+)$1	295	144	149	15.0000
GGAAA	chr1:154218700-154218945(+)$1	245	158	163	15.0000
GGAAA	chr6:56966392-56966636(+)$1	244	73	78	15.0000
GGAAA	chr2:96521534-96521758(-)$1	224	15	20	15.0000
GGAAA	chr20:20028365-20028627(-)$1	262	73	78	15.0000
GGAAA	chr3:47059091-47059322(-)$1	231	130	135	15.0000
GGAAA	chr4:113570593-113570829(+)$1	236	199	204	15.0000

#otherMatches

#Struct PSSM
gggg2	chr14:104141925-104142137(+)$1	212	100	105	15.0000
gmmmm	chr2:128046135-128046423(-)$1	288	145	150	15.0000
fffff	chr1:67425261-67425468(+)$1	207	157	162	15.0000
cccmm	chr12:93169703-93169961(-)$1	258	70	75	15.0000
eeenn	chr1:59155947-59156190(-)$1	243	128	133	15.0000
DD~~~	chrX:53410041-53410274(-)$1	233	210	215	15.0000
ddd66	chr11:111631584-111631847(-)$1	263	80	85	15.0000
FFFPP	chr21:34931947-34932182(+)$1	235	27	32	15.0000
doooo	chr3:183439724-183440009(+)$1	285	148	153	15.0000
dd333	chr14:24031460-24031717(-)$1	257	122	127	15.0000
3iiii	chr12:133319709-133319968(-)$1	259	142	147	15.0000
cccqq	chr5:139862122-139862347(+)$1	225	174	179	15.0000
qeeee	chrX:153994518-153994756(+)$1	238	231	236	15.0000
dd###	chr17:49337988-49338210(+)$1	222	42	47	15.0000
cc:::	chr16:18864974-18865251(-)$1	277	81	86	15.0000
F::::	chr9:127674089-127674397(-)$1	308	9	14	15.0000
::fff	chr4:89689034-89689259(-)$1	225	54	59	15.0000
ggggg	chr1:39782819-39783083(+)$1	264	26	31	15.0000
DDD==	chr1:67425268-67425506(+)$1	238	150	155	15.0000
EEEED	chr2:55470536-55470788(-)$1	252	12	17	15.0000
ddd::	chr19:50381360-50381599(+)$1	239	131	136	15.0000
'''''	chr3:47730800-47731014(-)$1	214	132	137	15.0000
ddooo	chr1:100584505-100584751(-)$1	246	162	167	15.0000
GYYDD	chr16:14721936-14722209(-)$1	273	197	202	15.0000
bb::b	chr1:23637593-23637815(-)$1	222	79	84	15.0000
sssss	chr11:3038257-3038532(-)$1	275	123	128	15.0000
dddd:	chr22:18314511-18314760(-)$1	249	9	14	15.0000
EEEKK	chr13:46559327-46559689(-)$1	362	160	165	15.0000
:::::	chr1:59125661-59125927(-)$1	266	4	9	15.0000
hhhh:	chr11:110118431-110118652(-)$1	221	139	144	15.0000
bbb]f	chr15:50581579-50581877(-)$1	298	125	130	15.0000
gg"""	chr20:36365677-36365932(+)$1	255	34	39	15.0000
ff:::	chr2:27257907-27258148(+)$1	241	149	154	15.0000
iiiic	chr7:138960742-138960954(+)$1	212	112	117	15.0000
ddd::	chr5:137520485-137520731(+)$1	246	63	68	15.0000
annnn	chr2:238657804-238658072(+)$1	268	153	158	15.0000
uuuuu	chr9:127998774-127998997(-)$1	223	183	188	15.0000
FFFFF	chr3:142139849-142140096(-)$1	247	220	225	15.0000
hhh44	chr11:71706441-71706699(+)$1	258	91	96	15.0000
fffff	chr1:110559188-110559431(+)$1	243	132	137	15.0000
GGGG\	chr1:94336219-94336449(-)$1	230	162	167	15.0000
ggggg	chr1:70758001-70758289(-)$1	288	56	61	15.0000
nnnn=	chr6:129962858-129963093(-)$1	235	181	186	15.0000
^^^^^	chr2:232577422-232577636(+)$1	214	150	155	15.0000
fffee	chr13:37581012-37581307(+)$1	295	144	149	15.0000
hhhh"	chr1:154218700-154218945(+)$1	245	158	163	15.0000
]bb::	chr6:56966392-56966636(+)$1	244	73	78	15.0000
:::::	chr2:96521534-96521758(-)$1	224	15	20	15.0000
GGG{F	chr20:20028365-20028627(-)$1	262	73	78	15.0000
ccc55	chr3:47059091-47059322(-)$1	231	130	135	15.0000
EEEEE	chr4:113570593-113570829(+)$1	236	199	204	15.0000

#DB
)))).	chr14:104141925-104142137(+)$1	1	100	105	15.0000
(....	chr2:128046135-128046423(-)$1	1	145	150	15.0000
(((((	chr1:67425261-67425468(+)$1	1	157	162	15.0000
(((..	chr12:93169703-93169961(-)$1	1	70	75	15.0000
(((..	chr1:59155947-59156190(-)$1	1	128	133	15.0000
))...	chrX:53410041-53410274(-)$1	1	210	215	15.0000
)))..	chr11:111631584-111631847(-)$1	1	80	85	15.0000
(((..	chr21:34931947-34932182(+)$1	1	27	32	15.0000
(....	chr3:183439724-183440009(+)$1	1	148	153	15.0000
))...	chr14:24031460-24031717(-)$1	1	122	127	15.0000
.))))	chr12:133319709-133319968(-)$1	1	142	147	15.0000
(((..	chr5:139862122-139862347(+)$1	1	174	179	15.0000
.))))	chrX:153994518-153994756(+)$1	1	231	236	15.0000
((...	chr17:49337988-49338210(+)$1	1	42	47	15.0000
))...	chr16:18864974-18865251(-)$1	1	81	86	15.0000
(....	chr9:127674089-127674397(-)$1	1	9	14	15.0000
..(((	chr4:89689034-89689259(-)$1	1	54	59	15.0000
)))))	chr1:39782819-39783083(+)$1	1	26	31	15.0000
)))((	chr1:67425268-67425506(+)$1	1	150	155	15.0000
(((((	chr2:55470536-55470788(-)$1	1	12	17	15.0000
)))..	chr19:50381360-50381599(+)$1	1	131	136	15.0000
.....	chr3:47730800-47731014(-)$1	1	132	137	15.0000
((...	chr1:100584505-100584751(-)$1	1	162	167	15.0000
)..))	chr16:14721936-14722209(-)$1	1	197	202	15.0000
))..(	chr1:23637593-23637815(-)$1	1	79	84	15.0000
.....	chr11:3038257-3038532(-)$1	1	123	128	15.0000
)))).	chr22:18314511-18314760(-)$1	1	9	14	15.0000
(((..	chr13:46559327-46559689(-)$1	1	160	165	15.0000
.....	chr1:59125661-59125927(-)$1	1	4	9	15.0000
)))).	chr11:110118431-110118652(-)$1	1	139	144	15.0000
))).)	chr15:50581579-50581877(-)$1	1	125	130	15.0000
((...	chr20:36365677-36365932(+)$1	1	34	39	15.0000
))...	chr2:27257907-27258148(+)$1	1	149	154	15.0000
))))(	chr7:138960742-138960954(+)$1	1	112	117	15.0000
)))..	chr5:137520485-137520731(+)$1	1	63	68	15.0000
(....	chr2:238657804-238658072(+)$1	1	153	158	15.0000
.....	chr9:127998774-127998997(-)$1	1	183	188	15.0000
)))))	chr3:142139849-142140096(-)$1	1	220	225	15.0000
)))..	chr11:71706441-71706699(+)$1	1	91	96	15.0000
)))))	chr1:110559188-110559431(+)$1	1	132	137	15.0000
)))).	chr1:94336219-94336449(-)$1	1	162	167	15.0000
)))))	chr1:70758001-70758289(-)$1	1	56	61	15.0000
....)	chr6:129962858-129963093(-)$1	1	181	186	15.0000
.....	chr2:232577422-232577636(+)$1	1	150	155	15.0000
)))))	chr13:37581012-37581307(+)$1	1	144	149	15.0000
((((.	chr1:154218700-154218945(+)$1	1	158	163	15.0000
.))..	chr6:56966392-56966636(+)$1	1	73	78	15.0000
.....	chr2:96521534-96521758(-)$1	1	15	20	15.0000
(((.(	chr20:20028365-20028627(-)$1	1	73	78	15.0000
)))..	chr3:47059091-47059322(-)$1	1	130	135	15.0000
)))))	chr4:113570593-113570829(+)$1	1	199	204	15.0000

#PSSM
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	
A : 0.98	a : 0.01	
A : 0.98	a : 0.01	
A : 0.98	a : 0.01	

#score	765.0000000000001
#seq	51
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_CDS_m2_run2.nuc.txt

#NT
ggcgggggccg	chr6:32157551-32157880(-)$1	329	221	232	20.6530
GGCGGCGGCGG	chr1:150551796-150552070(-)$1	274	44	55	28.8163
ggcggcggccg	chr17:80477747-80478009(+)$1	262	19	30	24.5306
GGAGGCGGCGG	chr10:70660988-70661268(+)$1	280	132	143	25.1428
ggcgccggcgg	chr4:2964751-2965019(-)$1	268	17	28	24.2244
ggcggcggcgc	chr1:230202964-230203236(+)$1	272	168	179	24.0204
GGCGGCGGCGG	chr3:154041929-154042207(-)$1	278	116	127	28.8163
GGUGGCCGCGG	chr4:56502148-56502368(-)$1	220	53	64	20.9591
GGCGGAGGCGG	chr19:19029929-19030290(-)$1	361	291	302	24.7346
GGACGCGGCGG	chr2:136742903-136743230(-)$1	327	245	256	21.6734
GGCCGCAGCGG	chr19:55918855-55919077(-)$1	222	24	35	21.3673
GGCGGCGGCGG	chr16:81478719-81478993(+)$1	274	148	159	28.8163
GGCGGCCGCGG	chr5:137688296-137688636(+)$1	340	81	92	25.1428
GGCCGGGGCGG	chr8:146017318-146017550(-)$1	232	186	197	21.4693
ggcggcggcgg	chr9:131790306-131790651(-)$1	345	149	160	28.8163
GGCGGCCGCUG	chr17:73892544-73892780(-)$1	236	57	68	20.6530
GGAGGGGGCGG	chr1:155145165-155145476(-)$1	311	280	291	21.2653
GGCGGCGGCGG	chr11:63933100-63933377(-)$1	277	105	116	28.8163
gccggcggcgg	chr16:2301191-2301472(-)$1	281	86	97	24.0204
GGCGGCGGCGG	chr2:70056951-70057231(+)$1	280	1	12	28.8163
GGCAGGGGCGG	chr17:5342178-5342520(-)$1	342	33	44	21.3673
GGCAGCGGCGG	chr7:100033542-100033810(-)$1	268	33	44	25.2448
GGCGGAGGCGG	chr2:178257491-178257831(+)$1	340	28	39	24.7346
GGCGGCAGCGG	chr1:228327898-228328152(+)$1	254	207	218	24.8367
GGCUGCGGCGG	chr17:41150664-41150944(+)$1	280	231	242	24.9387
ggcggcggcgg	chr19:47104546-47104797(+)$1	251	9	20	28.8163
ggccgcggcgg	chr12:125478278-125478560(+)$1	282	166	177	25.3469
ggcggcggcgg	chr1:27022801-27023045(+)$1	244	206	217	28.8163
GGAAGCGGCGG	chr11:126138517-126138790(-)$1	273	27	38	21.5714
GGCGGCGGCGG	chr12:56498394-56498652(+)$1	258	78	89	28.8163
ggcggcggcgg	chr1:2160055-2160333(+)$1	278	81	92	28.8163
ggcggccgccg	chr22:19166024-19166290(-)$1	266	133	144	20.8571
ggcggcggcgg	chr11:9286493-9286779(-)$1	286	61	72	28.8163
ggcggcggcgg	chr10:23003129-23003443(-)$1	314	50	61	28.8163
ggcggcggcgg	chr16:12009290-12009556(-)$1	266	0	11	28.8163
ggcggcggcgg	chr1:151584597-151584922(+)$1	325	137	148	28.8163
GGCGGCGGCGG	chrX:109560826-109561068(-)$1	242	0	11	28.8163
GGCGGCCGCGG	chr17:39684168-39684427(-)$1	259	48	59	25.1428
GGACGCGGCGG	chr1:234614077-234614320(-)$1	243	25	36	21.6734
GGCGGCGCCGG	chr9:111775567-111775845(-)$1	278	153	164	24.0204
GGAGCCGGCGG	chr1:955499-955737(+)$1	238	128	139	20.5510
GGCGGCGGCGG	chr14:102431033-102431302(+)$1	269	10	21	28.8163
GGCGGCUGCGG	chr3:98312120-98312401(-)$1	281	107	118	24.7346
ggcgguggcgg	chr19:12845226-12845510(-)$1	284	96	107	24.6326
GGCGGCGGCGG	chr11:62368805-62369104(-)$1	299	163	174	28.8163
ggcagcggcgg	chr17:7232355-7232613(-)$1	258	96	107	25.2448
ggcggcggcgg	chr8:61429571-61429882(+)$1	311	79	90	28.8163
ggcggcggcgg	chr6:151186952-151187286(+)$1	334	105	116	28.8163

#otherMatches

#Struct PSSM
IIIIIIIII}C	chr1:33429969-33430285(-)$1	316	277	288	28.8163
YBBYYBBgggg	chr6:32157551-32157880(-)$1	329	221	232	20.6530
BB{DDDD{BB{	chr1:150551796-150552070(-)$1	274	44	55	28.8163
GGGCCC{CCC{	chr17:80477747-80478009(+)$1	262	19	30	24.5306
na]ccc]====	chr10:70660988-70661268(+)$1	280	132	143	25.1428
EBBFFFFFFFF	chr4:2964751-2965019(-)$1	268	17	28	24.2244
ccccc[eeeee	chr1:230202964-230203236(+)$1	272	168	179	24.0204
&cccbb[cccb	chr3:154041929-154042207(-)$1	278	116	127	28.8163
ffffbb[eeee	chr4:56502148-56502368(-)$1	220	53	64	20.9591
HHHHHHHHHH:	chr19:19029929-19030290(-)$1	361	291	302	24.7346
uuuffffffCC	chr2:136742903-136743230(-)$1	327	245	256	21.6734
eeee]a]eeee	chr19:55918855-55919077(-)$1	222	24	35	21.3673
dd]bb]bb]cc	chr16:81478719-81478993(+)$1	274	148	159	28.8163
CCCHHHHHHHH	chr5:137688296-137688636(+)$1	340	81	92	25.1428
iiiiiii[bbv	chr8:146017318-146017550(-)$1	232	186	197	21.4693
CCC}DDDD}A}	chr9:131790306-131790651(-)$1	345	149	160	28.8163
ggggggccc]b	chr17:73892544-73892780(-)$1	236	57	68	20.6530
eeeeegggggg	chr1:155145165-155145476(-)$1	311	280	291	21.2653
d]a]cccgggg	chr11:63933100-63933377(-)$1	277	105	116	28.8163
ddddccc[bbm	chr16:2301191-2301472(-)$1	281	86	97	24.0204
dddcccmmmmc	chr2:70056951-70057231(+)$1	280	1	12	28.8163
EEKKJJJJJJJ	chr17:5342178-5342520(-)$1	342	33	44	21.3673
eeeee[eeeee	chr7:100033542-100033810(-)$1	268	33	44	25.2448
{BBCCCBB{A{	chr2:178257491-178257831(+)$1	340	28	39	24.7346
HHHHHH:::cc	chr1:228327898-228328152(+)$1	254	207	218	24.8367
GGGG}A}BBYY	chr17:41150664-41150944(+)$1	280	231	242	24.9387
dda!!======	chr19:47104546-47104797(+)$1	251	9	20	28.8163
JJ}DDDDDDDD	chr12:125478278-125478560(+)$1	282	166	177	25.3469
ddd========	chr1:27022801-27023045(+)$1	244	206	217	28.8163
ddd[bbbb[cc	chr11:126138517-126138790(-)$1	273	27	38	21.5714
"bb[bb[ffff	chr12:56498394-56498652(+)$1	258	78	89	28.8163
CC{FFFFFFKK	chr1:2160055-2160333(+)$1	278	81	92	28.8163
gggggg::FFF	chr22:19166024-19166290(-)$1	266	133	144	20.8571
]eeeeeDDDDD	chr11:9286493-9286779(-)$1	286	61	72	28.8163
ddd22hhhhhh	chr10:23003129-23003443(-)$1	314	50	61	28.8163
DDDDbb[bbmm	chr16:12009290-12009556(-)$1	266	0	11	28.8163
ccc:ccceeee	chr1:151584597-151584922(+)$1	325	137	148	28.8163
iiiiiiiii[d	chrX:109560826-109561068(-)$1	242	0	11	28.8163
bb[bb[eeeee	chr17:39684168-39684427(-)$1	259	48	59	25.1428
AKKCCCbb===	chr1:234614077-234614320(-)$1	243	25	36	21.6734
gggggghhhhh	chr9:111775567-111775845(-)$1	278	153	164	24.0204
ff]ffffff]b	chr1:955499-955737(+)$1	238	128	139	20.5510
B{A{CCC{ADD	chr14:102431033-102431302(+)$1	269	10	21	28.8163
===!!bbmmmm	chr3:98312120-98312401(-)$1	281	107	118	24.7346
a[bbmmmmbb]	chr19:12845226-12845510(-)$1	284	96	107	24.6326
mmdddd]ccc]	chr11:62368805-62369104(-)$1	299	163	174	28.8163
2bb:ddddccc	chr17:7232355-7232613(-)$1	258	96	107	25.2448
cc[dddd[eee	chr8:61429571-61429882(+)$1	311	79	90	28.8163
dd]dddd====	chr6:151186952-151187286(+)$1	334	105	116	28.8163

#DB
))))))))).)	chr1:33429969-33430285(-)$1	1	277	288	28.8163
.))..))((((	chr6:32157551-32157880(-)$1	1	221	232	20.6530
((.((((.((.	chr1:150551796-150552070(-)$1	1	44	55	28.8163
((((((.(((.	chr17:80477747-80478009(+)$1	1	19	30	24.5306
.).))).))))	chr10:70660988-70661268(+)$1	1	132	143	25.1428
(((((((((((	chr4:2964751-2965019(-)$1	1	17	28	24.2244
(((((.(((((	chr1:230202964-230203236(+)$1	1	168	179	24.0204
.(((((.((((	chr3:154041929-154042207(-)$1	1	116	127	28.8163
((((((.((((	chr4:56502148-56502368(-)$1	1	53	64	20.9591
)))))))))).	chr19:19029929-19030290(-)$1	1	291	302	24.7346
...))))))))	chr2:136742903-136743230(-)$1	1	245	256	21.6734
)))).).))))	chr19:55918855-55919077(-)$1	1	24	35	21.3673
)).)).)).))	chr16:81478719-81478993(+)$1	1	148	159	28.8163
(((((((((((	chr5:137688296-137688636(+)$1	1	81	92	25.1428
(((((((.((.	chr8:146017318-146017550(-)$1	1	186	197	21.4693
))).)))).).	chr9:131790306-131790651(-)$1	1	149	160	28.8163
))))))))).)	chr17:73892544-73892780(-)$1	1	57	68	20.6530
)))))))))))	chr1:155145165-155145476(-)$1	1	280	291	21.2653
).).)))))))	chr11:63933100-63933377(-)$1	1	105	116	28.8163
(((((((.((.	chr16:2301191-2301472(-)$1	1	86	97	24.0204
((((((....)	chr2:70056951-70057231(+)$1	1	1	12	28.8163
((..(((((((	chr17:5342178-5342520(-)$1	1	33	44	21.3673
(((((.(((((	chr7:100033542-100033810(-)$1	1	33	44	25.2448
.(((((((.(.	chr2:178257491-178257831(+)$1	1	28	39	24.7346
))))))...((	chr1:228327898-228328152(+)$1	1	207	218	24.8367
)))).).))..	chr17:41150664-41150944(+)$1	1	231	242	24.9387
(((..((((((	chr19:47104546-47104797(+)$1	1	9	20	28.8163
)).))))))))	chr12:125478278-125478560(+)$1	1	166	177	25.3469
)))))))))))	chr1:27022801-27023045(+)$1	1	206	217	28.8163
(((.((((.((	chr11:126138517-126138790(-)$1	1	27	38	21.5714
.((.((.((((	chr12:56498394-56498652(+)$1	1	78	89	28.8163
((.((((((..	chr1:2160055-2160333(+)$1	1	81	92	28.8163
))))))..)))	chr22:19166024-19166290(-)$1	1	133	144	20.8571
.)))))(((((	chr11:9286493-9286779(-)$1	1	61	72	28.8163
)))..))))))	chr10:23003129-23003443(-)$1	1	50	61	28.8163
((((((.((..	chr16:12009290-12009556(-)$1	1	0	11	28.8163
))).(((((((	chr1:151584597-151584922(+)$1	1	137	148	28.8163
(((((((((.(	chrX:109560826-109561068(-)$1	1	0	11	28.8163
((.((.(((((	chr17:39684168-39684427(-)$1	1	48	59	25.1428
(..((((((((	chr1:234614077-234614320(-)$1	1	25	36	21.6734
))))))(((((	chr9:111775567-111775845(-)$1	1	153	164	24.0204
)).)))))).)	chr1:955499-955737(+)$1	1	128	139	20.5510
(.(.(((.(((	chr14:102431033-102431302(+)$1	1	10	21	28.8163
(((..((....	chr3:98312120-98312401(-)$1	1	107	118	24.7346
(.((....)).	chr19:12845226-12845510(-)$1	1	96	107	24.6326
..)))).))).	chr11:62368805-62369104(-)$1	1	163	174	28.8163
.)).(((((((	chr17:7232355-7232613(-)$1	1	96	107	25.2448
((.((((.(((	chr8:61429571-61429882(+)$1	1	79	90	28.8163
)).))))))))	chr6:151186952-151187286(+)$1	1	105	116	28.8163

#PSSM
G : 0.59	g : 0.40	
G : 0.59	g : 0.38	c : 0.02	
C : 0.44	c : 0.40	A : 0.12	U : 0.02	
G : 0.42	g : 0.36	C : 0.08	A : 0.06	U : 0.02	c : 0.02	a : 0.02	
G : 0.57	g : 0.38	c : 0.02	C : 0.02	
C : 0.48	c : 0.36	G : 0.06	A : 0.04	g : 0.02	u : 0.02	
G : 0.44	g : 0.38	C : 0.08	A : 0.04	c : 0.02	U : 0.02	
G : 0.57	g : 0.40	C : 0.02	
C : 0.59	c : 0.40	
G : 0.57	g : 0.34	c : 0.06	U : 0.02	
G : 0.59	g : 0.38	c : 0.02	

#score	1251.0816326530623
#seq	49
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_CDS_m2_run1.nuc.txt

#NT
AGGA	chr3:132277719-132277963(-)$1	244	148	152	12.0000
AGGA	chr21:35276139-35276402(-)$1	263	57	61	12.0000
AGGA	chr22:36661961-36662196(+)$1	235	26	30	12.0000
AGGA	chr3:52842102-52842306(+)$1	204	138	142	12.0000
AGGA	chr1:19421936-19422178(-)$1	242	143	147	12.0000
AGGA	chr20:44978891-44979167(-)$1	276	82	86	12.0000
AGGA	chr2:220074016-220074294(+)$1	278	43	47	12.0000
AGGA	chr19:14589058-14589357(-)$1	299	2	6	12.0000
AGGA	chr3:184101210-184101456(+)$1	246	207	211	12.0000
AGGA	chr9:14737405-14737692(-)$1	287	254	258	12.0000
AGGA	chr17:46058428-46058681(+)$1	253	56	60	12.0000
AGGA	chr5:74016886-74017188(+)$1	302	288	292	12.0000
AGGA	chr3:52842106-52842334(+)$1	228	134	138	12.0000
AGGA	chr16:31202619-31202847(+)$1	228	15	19	12.0000
AGGA	chr17:1680558-1680798(+)$1	240	21	25	12.0000
AGGA	chr19:45882858-45883166(-)$1	308	159	163	12.0000
AGGA	chrX:48681489-48681763(+)$1	274	39	43	12.0000
agga	chr17:38061040-38061317(-)$1	277	23	27	12.0000
AGGA	chr16:31202266-31202521(+)$1	255	51	55	12.0000
AGGA	chr1:207273122-207273410(+)$1	288	21	25	12.0000
AGGA	chr19:36290819-36291066(-)$1	247	23	27	12.0000
AGGA	chr3:184107068-184107369(+)$1	301	170	174	12.0000
AGGA	chr3:52842587-52842843(+)$1	256	3	7	12.0000
AGGA	chr17:1680598-1680814(+)$1	216	200	204	12.0000
AGGA	chr19:49611271-49611523(+)$1	252	31	35	12.0000
AGGA	chr20:34129986-34130230(+)$1	244	198	202	12.0000
AGGA	chr14:24029363-24029601(-)$1	238	178	182	12.0000
AGGA	chr20:61468393-61468662(+)$1	269	70	74	12.0000
AGGA	chr1:46034482-46034747(+)$1	265	30	34	12.0000
AGGA	chr3:52842094-52842302(+)$1	208	146	150	12.0000
AGGA	chr17:46058948-46059209(+)$1	261	40	44	12.0000
AGGA	chr1:153617564-153617821(+)$1	257	71	75	12.0000
AGGA	chr1:19404368-19404616(-)$1	248	76	80	12.0000
AGGA	chrM:15740-15971(+)$1	231	23	27	12.0000
AGGA	chr9:19380088-19380331(-)$1	243	230	234	12.0000
AGGA	chr16:2225955-2226215(+)$1	260	113	117	12.0000
AGGA	chr11:62370238-62370537(-)$1	299	35	39	12.0000
AGGA	chr17:40268952-40269190(-)$1	238	9	13	12.0000
AGGA	chr5:167945994-167946272(+)$1	278	50	54	12.0000
AGGA	chrX:18911469-18911743(-)$1	274	14	18	12.0000
AGGA	chr20:61467728-61467955(+)$1	227	16	20	12.0000
AGGA	chr3:184101256-184101521(+)$1	265	161	165	12.0000
AGGA	chrM:15716-15932(+)$1	216	47	51	12.0000
AGGA	chr3:49721453-49721706(-)$1	253	137	141	12.0000
AGGA	chr4:110661962-110662197(-)$1	235	115	119	12.0000
AGGA	chr20:61471945-61472181(+)$1	236	87	91	12.0000
AGGA	chr14:23033899-23034136(-)$1	237	37	41	12.0000
AGGA	chr17:46057981-46058265(+)$1	284	17	21	12.0000
AGGA	chrX:70787478-70787701(+)$1	223	7	11	12.0000
AGGA	chr9:117062251-117062477(+)$1	226	124	128	12.0000
AGGA	chr20:61468470-61468716(+)$1	246	55	59	12.0000
AGGA	chr2:198257052-198257285(-)$1	233	173	177	12.0000
AGGA	chr3:53898716-53898934(+)$1	218	58	62	12.0000
AGGA	chr4:187209664-187209886(+)$1	222	135	139	12.0000
AGGA	chr17:74383426-74383693(+)$1	267	80	84	12.0000
AGGA	chr3:52842505-52842739(+)$1	234	85	89	12.0000
AGGA	chr3:52842059-52842294(+)$1	235	181	185	12.0000
AGGA	chr6:31498456-31498667(-)$1	211	52	56	12.0000
AGGA	chr3:184106642-184106884(+)$1	242	99	103	12.0000
AGGA	chr19:15225955-15226204(-)$1	249	23	27	12.0000
AGGA	chr1:19403242-19403498(-)$1	256	214	218	12.0000
AGGA	chrX:70782750-70782968(+)$1	218	10	14	12.0000
AGGA	chr3:52842469-52842705(+)$1	236	121	125	12.0000
AGGA	chr3:52842539-52842787(+)$1	248	51	55	12.0000
AGGA	chr16:31202321-31202532(+)$1	211	160	164	12.0000
AGGA	chr3:52842467-52842669(+)$1	202	123	127	12.0000
AGGA	chr19:18499630-18499894(+)$1	264	149	153	12.0000
AGGA	chr20:33867346-33867605(-)$1	259	3	7	12.0000
AGGA	chr11:65404296-65404539(+)$1	243	22	26	12.0000
AGGA	chr16:88781840-88782124(-)$1	284	32	36	12.0000
AGGA	chr10:93768697-93768921(+)$1	224	105	109	12.0000
AGGA	chr9:117071529-117071789(+)$1	260	113	117	12.0000
AGGA	chr16:723779-724039(+)$1	260	53	57	12.0000
AGGA	chr19:49611408-49611760(+)$1	352	8	12	12.0000
AGGA	chr3:52841703-52841966(+)$1	263	78	82	12.0000
AGGA	chrX:18912252-18912495(-)$1	243	166	170	12.0000
AGGA	chr4:77969434-77969676(-)$1	242	42	46	12.0000
AGGA	chr7:151947837-151948071(-)$1	234	104	108	12.0000
AGGA	chr17:80400252-80400523(+)$1	271	185	189	12.0000
AGGA	chr3:132279844-132280087(-)$1	243	24	28	12.0000
AGGA	chr2:219563719-219564026(+)$1	307	38	42	12.0000

#otherMatches

#Struct PSSM
dd!!	chr14:103576679-103576946(+)$1	267	40	44	12.0000
iiii	chr3:132277719-132277963(-)$1	244	148	152	12.0000
hhhr	chr21:35276139-35276402(-)$1	263	57	61	12.0000
""ff	chr22:36661961-36662196(+)$1	235	26	30	12.0000
iiix	chr3:52842102-52842306(+)$1	204	138	142	12.0000
444g	chr1:19421936-19422178(-)$1	242	143	147	12.0000
ccc:	chr20:44978891-44979167(-)$1	276	82	86	12.0000
CEEE	chr2:220074016-220074294(+)$1	278	43	47	12.0000
:CCC	chr19:14589058-14589357(-)$1	299	2	6	12.0000
g:::	chr3:184101210-184101456(+)$1	246	207	211	12.0000
____	chr9:14737405-14737692(-)$1	287	254	258	12.0000
!amm	chr17:46058428-46058681(+)$1	253	56	60	12.0000
FFFF	chr5:74016886-74017188(+)$1	302	288	292	12.0000
iiix	chr3:52842106-52842334(+)$1	228	134	138	12.0000
KFFF	chr16:31202619-31202847(+)$1	228	15	19	12.0000
IIII	chr17:1680558-1680798(+)$1	240	21	25	12.0000
oeee	chr19:45882858-45883166(-)$1	308	159	163	12.0000
ccco	chrX:48681489-48681763(+)$1	274	39	43	12.0000
DDDD	chr17:38061040-38061317(-)$1	277	23	27	12.0000
====	chr16:31202266-31202521(+)$1	255	51	55	12.0000
$hhh	chr1:207273122-207273410(+)$1	288	21	25	12.0000
DDDD	chr19:36290819-36291066(-)$1	247	23	27	12.0000
eee2	chr3:184107068-184107369(+)$1	301	170	174	12.0000
{BBC	chr3:52842587-52842843(+)$1	256	3	7	12.0000
CCZZ	chr17:1680598-1680814(+)$1	216	200	204	12.0000
KBB{	chr19:49611271-49611523(+)$1	252	31	35	12.0000
////	chr20:34129986-34130230(+)$1	244	198	202	12.0000
ddd]	chr14:24029363-24029601(-)$1	238	178	182	12.0000
ccc!	chr20:61468393-61468662(+)$1	269	70	74	12.0000
GGGG	chr1:46034482-46034747(+)$1	265	30	34	12.0000
iiix	chr3:52842094-52842302(+)$1	208	146	150	12.0000
eeee	chr17:46058948-46059209(+)$1	261	40	44	12.0000
eee]	chr1:153617564-153617821(+)$1	257	71	75	12.0000
gggg	chr1:19404368-19404616(-)$1	248	76	80	12.0000
eeee	chrM:15740-15971(+)$1	231	23	27	12.0000
b]a]	chr9:19380088-19380331(-)$1	243	230	234	12.0000
:BB{	chr16:2225955-2226215(+)$1	260	113	117	12.0000
ff::	chr11:62370238-62370537(-)$1	299	35	39	12.0000
::AK	chr17:40268952-40269190(-)$1	238	9	13	12.0000
ffff	chr5:167945994-167946272(+)$1	278	50	54	12.0000
EEE{	chrX:18911469-18911743(-)$1	274	14	18	12.0000
meee	chr20:61467728-61467955(+)$1	227	16	20	12.0000
g333	chr3:184101256-184101521(+)$1	265	161	165	12.0000
eee:	chrM:15716-15932(+)$1	216	47	51	12.0000
!ccc	chr3:49721453-49721706(-)$1	253	137	141	12.0000
::::	chr4:110661962-110662197(-)$1	235	115	119	12.0000
::bb	chr20:61471945-61472181(+)$1	236	87	91	12.0000
gggg	chr14:23033899-23034136(-)$1	237	37	41	12.0000
JJJJ	chr17:46057981-46058265(+)$1	284	17	21	12.0000
IIII	chrX:70787478-70787701(+)$1	223	7	11	12.0000
FFFF	chr9:117062251-117062477(+)$1	226	124	128	12.0000
]eee	chr20:61468470-61468716(+)$1	246	55	59	12.0000
"bb!	chr2:198257052-198257285(-)$1	233	173	177	12.0000
dddd	chr3:53898716-53898934(+)$1	218	58	62	12.0000
2ggg	chr4:187209664-187209886(+)$1	222	135	139	12.0000
ee22	chr17:74383426-74383693(+)$1	267	80	84	12.0000
2fff	chr3:52842505-52842739(+)$1	234	85	89	12.0000
iiix	chr3:52842059-52842294(+)$1	235	181	185	12.0000
ffff	chr6:31498456-31498667(-)$1	211	52	56	12.0000
e!!b	chr3:184106642-184106884(+)$1	242	99	103	12.0000
DDDD	chr19:15225955-15226204(-)$1	249	23	27	12.0000
dddD	chr1:19403242-19403498(-)$1	256	214	218	12.0000
dd!!	chrX:70782750-70782968(+)$1	218	10	14	12.0000
2fff	chr3:52842469-52842705(+)$1	236	121	125	12.0000
"hhh	chr3:52842539-52842787(+)$1	248	51	55	12.0000
tttt	chr16:31202321-31202532(+)$1	211	160	164	12.0000
2fff	chr3:52842467-52842669(+)$1	202	123	127	12.0000
]ccc	chr19:18499630-18499894(+)$1	264	149	153	12.0000
JJJJ	chr20:33867346-33867605(-)$1	259	3	7	12.0000
dddd	chr11:65404296-65404539(+)$1	243	22	26	12.0000
{FFF	chr16:88781840-88782124(-)$1	284	32	36	12.0000
dd55	chr10:93768697-93768921(+)$1	224	105	109	12.0000
gggg	chr9:117071529-117071789(+)$1	260	113	117	12.0000
cbbn	chr16:723779-724039(+)$1	260	53	57	12.0000
rrrr	chr19:49611408-49611760(+)$1	352	8	12	12.0000
FFFF	chr3:52841703-52841966(+)$1	263	78	82	12.0000
d]bb	chrX:18912252-18912495(-)$1	243	166	170	12.0000
#bb[	chr4:77969434-77969676(-)$1	242	42	46	12.0000
ffff	chr7:151947837-151948071(-)$1	234	104	108	12.0000
::ee	chr17:80400252-80400523(+)$1	271	185	189	12.0000
oeee	chr3:132279844-132280087(-)$1	243	24	28	12.0000
qqqq	chr2:219563719-219564026(+)$1	307	38	42	12.0000

#DB
((..	chr14:103576679-103576946(+)$1	1	40	44	12.0000
((((	chr3:132277719-132277963(-)$1	1	148	152	12.0000
(((.	chr21:35276139-35276402(-)$1	1	57	61	12.0000
..((	chr22:36661961-36662196(+)$1	1	26	30	12.0000
(((.	chr3:52842102-52842306(+)$1	1	138	142	12.0000
...)	chr1:19421936-19422178(-)$1	1	143	147	12.0000
))).	chr20:44978891-44979167(-)$1	1	82	86	12.0000
((((	chr2:220074016-220074294(+)$1	1	43	47	12.0000
.(((	chr19:14589058-14589357(-)$1	1	2	6	12.0000
)...	chr3:184101210-184101456(+)$1	1	207	211	12.0000
....	chr9:14737405-14737692(-)$1	1	254	258	12.0000
.(..	chr17:46058428-46058681(+)$1	1	56	60	12.0000
))))	chr5:74016886-74017188(+)$1	1	288	292	12.0000
(((.	chr3:52842106-52842334(+)$1	1	134	138	12.0000
.(((	chr16:31202619-31202847(+)$1	1	15	19	12.0000
((((	chr17:1680558-1680798(+)$1	1	21	25	12.0000
.)))	chr19:45882858-45883166(-)$1	1	159	163	12.0000
(((.	chrX:48681489-48681763(+)$1	1	39	43	12.0000
((((	chr17:38061040-38061317(-)$1	1	23	27	12.0000
))))	chr16:31202266-31202521(+)$1	1	51	55	12.0000
.(((	chr1:207273122-207273410(+)$1	1	21	25	12.0000
((((	chr19:36290819-36291066(-)$1	1	23	27	12.0000
))).	chr3:184107068-184107369(+)$1	1	170	174	12.0000
.(((	chr3:52842587-52842843(+)$1	1	3	7	12.0000
))..	chr17:1680598-1680814(+)$1	1	200	204	12.0000
.((.	chr19:49611271-49611523(+)$1	1	31	35	12.0000
....	chr20:34129986-34130230(+)$1	1	198	202	12.0000
))).	chr14:24029363-24029601(-)$1	1	178	182	12.0000
(((.	chr20:61468393-61468662(+)$1	1	70	74	12.0000
((((	chr1:46034482-46034747(+)$1	1	30	34	12.0000
(((.	chr3:52842094-52842302(+)$1	1	146	150	12.0000
((((	chr17:46058948-46059209(+)$1	1	40	44	12.0000
))).	chr1:153617564-153617821(+)$1	1	71	75	12.0000
((((	chr1:19404368-19404616(-)$1	1	76	80	12.0000
))))	chrM:15740-15971(+)$1	1	23	27	12.0000
).).	chr9:19380088-19380331(-)$1	1	230	234	12.0000
.((.	chr16:2225955-2226215(+)$1	1	113	117	12.0000
))..	chr11:62370238-62370537(-)$1	1	35	39	12.0000
..(.	chr17:40268952-40269190(-)$1	1	9	13	12.0000
((((	chr5:167945994-167946272(+)$1	1	50	54	12.0000
(((.	chrX:18911469-18911743(-)$1	1	14	18	12.0000
.)))	chr20:61467728-61467955(+)$1	1	16	20	12.0000
)...	chr3:184101256-184101521(+)$1	1	161	165	12.0000
))).	chrM:15716-15932(+)$1	1	47	51	12.0000
.(((	chr3:49721453-49721706(-)$1	1	137	141	12.0000
....	chr4:110661962-110662197(-)$1	1	115	119	12.0000
..((	chr20:61471945-61472181(+)$1	1	87	91	12.0000
((((	chr14:23033899-23034136(-)$1	1	37	41	12.0000
((((	chr17:46057981-46058265(+)$1	1	17	21	12.0000
((((	chrX:70787478-70787701(+)$1	1	7	11	12.0000
))((	chr9:117062251-117062477(+)$1	1	124	128	12.0000
.)))	chr20:61468470-61468716(+)$1	1	55	59	12.0000
.((.	chr2:198257052-198257285(-)$1	1	173	177	12.0000
))))	chr3:53898716-53898934(+)$1	1	58	62	12.0000
.)))	chr4:187209664-187209886(+)$1	1	135	139	12.0000
))..	chr17:74383426-74383693(+)$1	1	80	84	12.0000
.)))	chr3:52842505-52842739(+)$1	1	85	89	12.0000
(((.	chr3:52842059-52842294(+)$1	1	181	185	12.0000
))))	chr6:31498456-31498667(-)$1	1	52	56	12.0000
(..(	chr3:184106642-184106884(+)$1	1	99	103	12.0000
((((	chr19:15225955-15226204(-)$1	1	23	27	12.0000
))))	chr1:19403242-19403498(-)$1	1	214	218	12.0000
((..	chrX:70782750-70782968(+)$1	1	10	14	12.0000
.)))	chr3:52842469-52842705(+)$1	1	121	125	12.0000
.(((	chr3:52842539-52842787(+)$1	1	51	55	12.0000
....	chr16:31202321-31202532(+)$1	1	160	164	12.0000
.)))	chr3:52842467-52842669(+)$1	1	123	127	12.0000
.)))	chr19:18499630-18499894(+)$1	1	149	153	12.0000
((((	chr20:33867346-33867605(-)$1	1	3	7	12.0000
((((	chr11:65404296-65404539(+)$1	1	22	26	12.0000
.(((	chr16:88781840-88782124(-)$1	1	32	36	12.0000
))..	chr10:93768697-93768921(+)$1	1	105	109	12.0000
((((	chr9:117071529-117071789(+)$1	1	113	117	12.0000
(((.	chr16:723779-724039(+)$1	1	53	57	12.0000
....	chr19:49611408-49611760(+)$1	1	8	12	12.0000
((((	chr3:52841703-52841966(+)$1	1	78	82	12.0000
).))	chrX:18912252-18912495(-)$1	1	166	170	12.0000
.((.	chr4:77969434-77969676(-)$1	1	42	46	12.0000
((((	chr7:151947837-151948071(-)$1	1	104	108	12.0000
..((	chr17:80400252-80400523(+)$1	1	185	189	12.0000
.)))	chr3:132279844-132280087(-)$1	1	24	28	12.0000
....	chr2:219563719-219564026(+)$1	1	38	42	12.0000

#PSSM
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	
A : 0.98	a : 0.01	

#score	984.0000000000001
#seq	82
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_UTR_m2_run2.nuc.txt

#NT
CUG	chr11:2411540-2411751(+)$1	211	17	20	8.9999
CUG	chr14:68156827-68157060(-)$1	233	11	14	8.9999
CUG	chr5:179150672-179150880(+)$1	208	19	22	8.9999
CUG	chr2:220115870-220116113(-)$1	243	41	44	8.9999
CUG	chr11:118925122-118925376(-)$1	254	52	55	8.9999
CUG	chr5:179143189-179143395(+)$1	206	0	3	8.9999
CUG	chr17:42429930-42430161(+)$1	231	28	31	8.9999
CUG	chr11:118919129-118919375(-)$1	246	18	21	8.9999
CUG	chr17:79803336-79803573(-)$1	237	5	8	8.9999
CUG	chr11:62396343-62396571(-)$1	228	62	65	8.9999
CUG	chr7:6513740-6514013(-)$1	273	14	17	8.9999
CUG	chr2:8910710-8910971(-)$1	261	17	20	8.9999
CUG	chr12:56120852-56121084(-)$1	232	9	12	8.9999
CUG	chr16:74486985-74487274(-)$1	289	64	67	8.9999
CUG	chr1:66037987-66038233(+)$1	246	28	31	8.9999
CUG	chr7:6502665-6502907(-)$1	242	159	162	8.9999
CUG	chrX:153663590-153663862(+)$1	272	4	7	8.9999
CUG	chr1:55526951-55527196(+)$1	245	25	28	8.9999
CUG	chr3:141644286-141644553(+)$1	267	22	25	8.9999
CUG	chr11:63521076-63521280(+)$1	204	11	14	8.9999
CUG	chr11:62398187-62398398(-)$1	211	6	9	8.9999
CUG	chr5:179149770-179150022(+)$1	252	0	3	8.9999
CUG	chr7:56145959-56146185(+)$1	226	12	15	8.9999
CUG	chr5:179150594-179150820(+)$1	226	31	34	8.9999
CUG	chr14:54898729-54898996(-)$1	267	19	22	8.9999
CUG	chr11:62393943-62394154(-)$1	211	2	5	8.9999
CUG	chr4:99997754-99997978(-)$1	224	17	20	8.9999
CUG	chr5:130495184-130495404(-)$1	220	68	71	8.9999
CUG	chr15:89442626-89442864(-)$1	238	27	30	8.9999
CUG	chr5:179151602-179151805(+)$1	203	86	89	8.9999
CUG	chr11:118967862-118968108(-)$1	246	70	73	8.9999
CUG	chr11:118924749-118924990(-)$1	241	13	16	8.9999
CUG	chr1:40545978-40546221(-)$1	243	6	9	8.9999
CUG	chr1:207498925-207499163(+)$1	238	164	167	8.9999
CUG	chr15:89449763-89450016(-)$1	253	13	16	8.9999
CUG	chr1:201112860-201113132(-)$1	272	8	11	8.9999
CUG	chr2:216232614-216232851(-)$1	237	194	197	8.9999
CUG	chr12:46757409-46757668(-)$1	259	9	12	8.9999
CUG	chr12:49663277-49663544(+)$1	267	1	4	8.9999
CUG	chr5:179136895-179137128(+)$1	233	47	50	8.9999
CUG	chr5:10391581-10391839(+)$1	258	50	53	8.9999
CUG	chr19:45419385-45419655(+)$1	270	42	45	8.9999
CUG	chr15:89448921-89449157(-)$1	236	18	21	8.9999
CUG	chr15:44053525-44053735(+)$1	210	14	17	8.9999
CUG	chr11:71146459-71146743(-)$1	284	4	7	8.9999
CUG	chr11:118970870-118971098(-)$1	228	6	9	8.9999
CUG	chr19:38795968-38796226(-)$1	258	22	25	8.9999
CUG	chr7:65432617-65432843(-)$1	226	12	15	8.9999
CUG	chr7:56140654-56140889(+)$1	235	7	10	8.9999
CUG	chr2:153616195-153616473(+)$1	278	69	72	8.9999
CUG	chr2:86718190-86718499(+)$1	309	47	50	8.9999
CUG	chr19:47287290-47287500(-)$1	210	57	60	8.9999
CUG	chr2:74690217-74690450(-)$1	233	138	141	8.9999
CUG	chr14:102551662-102551868(-)$1	206	138	141	8.9999
CUG	chr1:180158675-180158909(+)$1	234	18	21	8.9999
CUG	chr11:118922055-118922312(-)$1	257	6	9	8.9999
CUG	chr14:68157841-68158061(-)$1	220	3	6	8.9999
cug	chr11:62652550-62652766(+)$1	216	40	43	8.9999
CUG	chr17:40665840-40666097(+)$1	257	18	21	8.9999
CUG	chrX:47444841-47445059(+)$1	218	65	68	8.9999
CUG	chr3:141625947-141626168(+)$1	221	115	118	8.9999
CUG	chr19:40877535-40877754(+)$1	219	18	21	8.9999
CUG	chr6:7899732-7900005(-)$1	273	10	13	8.9999
CUG	chr17:79803377-79803663(-)$1	286	30	33	8.9999
CUG	chrX:100418480-100418740(+)$1	260	52	55	8.9999
CUG	chr8:144102902-144103202(+)$1	300	27	30	8.9999
CUG	chr5:179149912-179150120(+)$1	208	1	4	8.9999
CUG	chr20:4680370-4680737(+)$1	367	29	32	8.9999
CUG	chr12:110778450-110778730(+)$1	280	19	22	8.9999
CUG	chr5:172461301-172461527(+)$1	226	53	56	8.9999
CUG	chr3:195780188-195780424(-)$1	236	4	7	8.9999
CUG	chr7:75608782-75608998(+)$1	216	26	29	8.9999
CUG	chr17:36923601-36923899(-)$1	298	9	12	8.9999
CUG	chr3:195792303-195792559(-)$1	256	11	14	8.9999
CUG	chr17:75495633-75495906(+)$1	273	37	40	8.9999
CUG	chr19:14676455-14676683(+)$1	228	26	29	8.9999
CUG	chr18:55268853-55269108(-)$1	255	28	31	8.9999
CUG	chr18:55274334-55274666(-)$1	332	217	220	8.9999
CUG	chr15:72491904-72492165(-)$1	261	5	8	8.9999
CUG	chr5:175816498-175816730(+)$1	232	9	12	8.9999
CUG	chr8:11705147-11705432(-)$1	285	3	6	8.9999
CUG	chr1:165721279-165721506(-)$1	227	140	143	8.9999
CUG	chr3:195782060-195782272(-)$1	212	7	10	8.9999
CUG	chr11:118922430-118922669(-)$1	239	13	16	8.9999
CUG	chr14:51716310-51716566(+)$1	256	50	53	8.9999
CUG	chr11:130005357-130005651(+)$1	294	0	3	8.9999
CUG	chr11:129999832-130000075(+)$1	243	43	46	8.9999
CUG	chr17:1674225-1674542(+)$1	317	23	26	8.9999
CUG	chr6:143457891-143458185(+)$1	294	19	22	8.9999
CUG	chr6:49574489-49574721(-)$1	232	109	112	8.9999
CUG	chr1:207497924-207498196(+)$1	272	9	12	8.9999
CUG	chr11:129996552-129996821(+)$1	269	3	6	8.9999

#otherMatches

#Struct PSSM
EE{	chr11:118925106-118925317(-)$1	211	5	8	8.9999
mmm	chr11:2411540-2411751(+)$1	211	17	20	8.9999
:::	chr14:68156827-68157060(-)$1	233	11	14	8.9999
eee	chr5:179150672-179150880(+)$1	208	19	22	8.9999
DDD	chr2:220115870-220116113(-)$1	243	41	44	8.9999
boo	chr11:118925122-118925376(-)$1	254	52	55	8.9999
:::	chr5:179143189-179143395(+)$1	206	0	3	8.9999
lee	chr17:42429930-42430161(+)$1	231	28	31	8.9999
%%c	chr11:118919129-118919375(-)$1	246	18	21	8.9999
EEE	chr17:79803336-79803573(-)$1	237	5	8	8.9999
fff	chr11:62396343-62396571(-)$1	228	62	65	8.9999
eee	chr7:6513740-6514013(-)$1	273	14	17	8.9999
ccc	chr2:8910710-8910971(-)$1	261	17	20	8.9999
III	chr12:56120852-56121084(-)$1	232	9	12	8.9999
b##	chr16:74486985-74487274(-)$1	289	64	67	8.9999
ddd	chr1:66037987-66038233(+)$1	246	28	31	8.9999
cc]	chr7:6502665-6502907(-)$1	242	159	162	8.9999
EEE	chrX:153663590-153663862(+)$1	272	4	7	8.9999
iii	chr1:55526951-55527196(+)$1	245	25	28	8.9999
ggg	chr3:141644286-141644553(+)$1	267	22	25	8.9999
EEE	chr11:63521076-63521280(+)$1	204	11	14	8.9999
DDD	chr11:62398187-62398398(-)$1	211	6	9	8.9999
:::	chr5:179149770-179150022(+)$1	252	0	3	8.9999
ggg	chr7:56145959-56146185(+)$1	226	12	15	8.9999
eee	chr5:179150594-179150820(+)$1	226	31	34	8.9999
RRR	chr14:54898729-54898996(-)$1	267	19	22	8.9999
DDD	chr11:62393943-62394154(-)$1	211	2	5	8.9999
dd!	chr4:99997754-99997978(-)$1	224	17	20	8.9999
::c	chr5:130495184-130495404(-)$1	220	68	71	8.9999
gg[	chr15:89442626-89442864(-)$1	238	27	30	8.9999
bb]	chr5:179151602-179151805(+)$1	203	86	89	8.9999
iii	chr11:118967862-118968108(-)$1	246	70	73	8.9999
CC{	chr11:118924749-118924990(-)$1	241	13	16	8.9999
:DD	chr1:40545978-40546221(-)$1	243	6	9	8.9999
ggg	chr1:207498925-207499163(+)$1	238	164	167	8.9999
fff	chr15:89449763-89450016(-)$1	253	13	16	8.9999
EEE	chr1:201112860-201113132(-)$1	272	8	11	8.9999
GGG	chr2:216232614-216232851(-)$1	237	194	197	8.9999
B::	chr12:46757409-46757668(-)$1	259	9	12	8.9999
b[e	chr12:49663277-49663544(+)$1	267	1	4	8.9999
LLB	chr5:179136895-179137128(+)$1	233	47	50	8.9999
cc2	chr5:10391581-10391839(+)$1	258	50	53	8.9999
fff	chr19:45419385-45419655(+)$1	270	42	45	8.9999
ooo	chr15:89448921-89449157(-)$1	236	18	21	8.9999
d%%	chr15:44053525-44053735(+)$1	210	14	17	8.9999
dd[	chr11:71146459-71146743(-)$1	284	4	7	8.9999
GGG	chr11:118970870-118971098(-)$1	228	6	9	8.9999
eee	chr19:38795968-38796226(-)$1	258	22	25	8.9999
ccc	chr7:65432617-65432843(-)$1	226	12	15	8.9999
:BB	chr7:56140654-56140889(+)$1	235	7	10	8.9999
qqq	chr2:153616195-153616473(+)$1	278	69	72	8.9999
B{E	chr2:86718190-86718499(+)$1	309	47	50	8.9999
"dd	chr19:47287290-47287500(-)$1	210	57	60	8.9999
2ff	chr2:74690217-74690450(-)$1	233	138	141	8.9999
>>>	chr14:102551662-102551868(-)$1	206	138	141	8.9999
EEE	chr1:180158675-180158909(+)$1	234	18	21	8.9999
::C	chr11:118922055-118922312(-)$1	257	6	9	8.9999
DDE	chr14:68157841-68158061(-)$1	220	3	6	8.9999
qqg	chr11:62652550-62652766(+)$1	216	40	43	8.9999
MHH	chr17:40665840-40666097(+)$1	257	18	21	8.9999
ggg	chrX:47444841-47445059(+)$1	218	65	68	8.9999
ddd	chr3:141625947-141626168(+)$1	221	115	118	8.9999
ddd	chr19:40877535-40877754(+)$1	219	18	21	8.9999
!cc	chr6:7899732-7900005(-)$1	273	10	13	8.9999
EEE	chr17:79803377-79803663(-)$1	286	30	33	8.9999
eee	chrX:100418480-100418740(+)$1	260	52	55	8.9999
eee	chr8:144102902-144103202(+)$1	300	27	30	8.9999
:FF	chr5:179149912-179150120(+)$1	208	1	4	8.9999
$cc	chr20:4680370-4680737(+)$1	367	29	32	8.9999
:FF	chr12:110778450-110778730(+)$1	280	19	22	8.9999
lld	chr5:172461301-172461527(+)$1	226	53	56	8.9999
"""	chr3:195780188-195780424(-)$1	236	4	7	8.9999
DDD	chr7:75608782-75608998(+)$1	216	26	29	8.9999
""b	chr17:36923601-36923899(-)$1	298	9	12	8.9999
^^^	chr3:195792303-195792559(-)$1	256	11	14	8.9999
h[b	chr17:75495633-75495906(+)$1	273	37	40	8.9999
{CC	chr19:14676455-14676683(+)$1	228	26	29	8.9999
uuu	chr18:55268853-55269108(-)$1	255	28	31	8.9999
EEE	chr18:55274334-55274666(-)$1	332	217	220	8.9999
mmc	chr15:72491904-72492165(-)$1	261	5	8	8.9999
!!d	chr5:175816498-175816730(+)$1	232	9	12	8.9999
:::	chr8:11705147-11705432(-)$1	285	3	6	8.9999
44c	chr1:165721279-165721506(-)$1	227	140	143	8.9999
DDD	chr3:195782060-195782272(-)$1	212	7	10	8.9999
III	chr11:118922430-118922669(-)$1	239	13	16	8.9999
GGG	chr14:51716310-51716566(+)$1	256	50	53	8.9999
::f	chr11:130005357-130005651(+)$1	294	0	3	8.9999
DDD	chr11:129999832-130000075(+)$1	243	43	46	8.9999
GGG	chr17:1674225-1674542(+)$1	317	23	26	8.9999
fff	chr6:143457891-143458185(+)$1	294	19	22	8.9999
lld	chr6:49574489-49574721(-)$1	232	109	112	8.9999
^^^	chr1:207497924-207498196(+)$1	272	9	12	8.9999
EEE	chr11:129996552-129996821(+)$1	269	3	6	8.9999

#DB
((.	chr11:118925106-118925317(-)$1	1	5	8	8.9999
...	chr11:2411540-2411751(+)$1	1	17	20	8.9999
...	chr14:68156827-68157060(-)$1	1	11	14	8.9999
(((	chr5:179150672-179150880(+)$1	1	19	22	8.9999
(((	chr2:220115870-220116113(-)$1	1	41	44	8.9999
(..	chr11:118925122-118925376(-)$1	1	52	55	8.9999
...	chr5:179143189-179143395(+)$1	1	0	3	8.9999
.))	chr17:42429930-42430161(+)$1	1	28	31	8.9999
..(	chr11:118919129-118919375(-)$1	1	18	21	8.9999
(((	chr17:79803336-79803573(-)$1	1	5	8	8.9999
(((	chr11:62396343-62396571(-)$1	1	62	65	8.9999
(((	chr7:6513740-6514013(-)$1	1	14	17	8.9999
(((	chr2:8910710-8910971(-)$1	1	17	20	8.9999
(((	chr12:56120852-56121084(-)$1	1	9	12	8.9999
(..	chr16:74486985-74487274(-)$1	1	64	67	8.9999
(((	chr1:66037987-66038233(+)$1	1	28	31	8.9999
)).	chr7:6502665-6502907(-)$1	1	159	162	8.9999
(((	chrX:153663590-153663862(+)$1	1	4	7	8.9999
)))	chr1:55526951-55527196(+)$1	1	25	28	8.9999
(((	chr3:141644286-141644553(+)$1	1	22	25	8.9999
(((	chr11:63521076-63521280(+)$1	1	11	14	8.9999
(((	chr11:62398187-62398398(-)$1	1	6	9	8.9999
...	chr5:179149770-179150022(+)$1	1	0	3	8.9999
(((	chr7:56145959-56146185(+)$1	1	12	15	8.9999
(((	chr5:179150594-179150820(+)$1	1	31	34	8.9999
...	chr14:54898729-54898996(-)$1	1	19	22	8.9999
(((	chr11:62393943-62394154(-)$1	1	2	5	8.9999
((.	chr4:99997754-99997978(-)$1	1	17	20	8.9999
..(	chr5:130495184-130495404(-)$1	1	68	71	8.9999
((.	chr15:89442626-89442864(-)$1	1	27	30	8.9999
)).	chr5:179151602-179151805(+)$1	1	86	89	8.9999
(((	chr11:118967862-118968108(-)$1	1	70	73	8.9999
((.	chr11:118924749-118924990(-)$1	1	13	16	8.9999
.((	chr1:40545978-40546221(-)$1	1	6	9	8.9999
)))	chr1:207498925-207499163(+)$1	1	164	167	8.9999
(((	chr15:89449763-89450016(-)$1	1	13	16	8.9999
(((	chr1:201112860-201113132(-)$1	1	8	11	8.9999
)))	chr2:216232614-216232851(-)$1	1	194	197	8.9999
(..	chr12:46757409-46757668(-)$1	1	9	12	8.9999
(.(	chr12:49663277-49663544(+)$1	1	1	4	8.9999
..(	chr5:179136895-179137128(+)$1	1	47	50	8.9999
)).	chr5:10391581-10391839(+)$1	1	50	53	8.9999
(((	chr19:45419385-45419655(+)$1	1	42	45	8.9999
...	chr15:89448921-89449157(-)$1	1	18	21	8.9999
(..	chr15:44053525-44053735(+)$1	1	14	17	8.9999
((.	chr11:71146459-71146743(-)$1	1	4	7	8.9999
(((	chr11:118970870-118971098(-)$1	1	6	9	8.9999
(((	chr19:38795968-38796226(-)$1	1	22	25	8.9999
(((	chr7:65432617-65432843(-)$1	1	12	15	8.9999
.((	chr7:56140654-56140889(+)$1	1	7	10	8.9999
...	chr2:153616195-153616473(+)$1	1	69	72	8.9999
(.(	chr2:86718190-86718499(+)$1	1	47	50	8.9999
.((	chr19:47287290-47287500(-)$1	1	57	60	8.9999
.))	chr2:74690217-74690450(-)$1	1	138	141	8.9999
...	chr14:102551662-102551868(-)$1	1	138	141	8.9999
(((	chr1:180158675-180158909(+)$1	1	18	21	8.9999
..(	chr11:118922055-118922312(-)$1	1	6	9	8.9999
(((	chr14:68157841-68158061(-)$1	1	3	6	8.9999
..)	chr11:62652550-62652766(+)$1	1	40	43	8.9999
.((	chr17:40665840-40666097(+)$1	1	18	21	8.9999
)))	chrX:47444841-47445059(+)$1	1	65	68	8.9999
)))	chr3:141625947-141626168(+)$1	1	115	118	8.9999
(((	chr19:40877535-40877754(+)$1	1	18	21	8.9999
.((	chr6:7899732-7900005(-)$1	1	10	13	8.9999
(((	chr17:79803377-79803663(-)$1	1	30	33	8.9999
)))	chrX:100418480-100418740(+)$1	1	52	55	8.9999
(((	chr8:144102902-144103202(+)$1	1	27	30	8.9999
.((	chr5:179149912-179150120(+)$1	1	1	4	8.9999
.((	chr20:4680370-4680737(+)$1	1	29	32	8.9999
.((	chr12:110778450-110778730(+)$1	1	19	22	8.9999
..)	chr5:172461301-172461527(+)$1	1	53	56	8.9999
...	chr3:195780188-195780424(-)$1	1	4	7	8.9999
(((	chr7:75608782-75608998(+)$1	1	26	29	8.9999
..(	chr17:36923601-36923899(-)$1	1	9	12	8.9999
...	chr3:195792303-195792559(-)$1	1	11	14	8.9999
(.(	chr17:75495633-75495906(+)$1	1	37	40	8.9999
.((	chr19:14676455-14676683(+)$1	1	26	29	8.9999
...	chr18:55268853-55269108(-)$1	1	28	31	8.9999
)))	chr18:55274334-55274666(-)$1	1	217	220	8.9999
..)	chr15:72491904-72492165(-)$1	1	5	8	8.9999
..(	chr5:175816498-175816730(+)$1	1	9	12	8.9999
...	chr8:11705147-11705432(-)$1	1	3	6	8.9999
..)	chr1:165721279-165721506(-)$1	1	140	143	8.9999
(((	chr3:195782060-195782272(-)$1	1	7	10	8.9999
(((	chr11:118922430-118922669(-)$1	1	13	16	8.9999
(((	chr14:51716310-51716566(+)$1	1	50	53	8.9999
..(	chr11:130005357-130005651(+)$1	1	0	3	8.9999
(((	chr11:129999832-130000075(+)$1	1	43	46	8.9999
(((	chr17:1674225-1674542(+)$1	1	23	26	8.9999
)))	chr6:143457891-143458185(+)$1	1	19	22	8.9999
..)	chr6:49574489-49574721(-)$1	1	109	112	8.9999
...	chr1:207497924-207498196(+)$1	1	9	12	8.9999
(((	chr11:129996552-129996821(+)$1	1	3	6	8.9999

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	836.9999999999999
#seq	93
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_transcript_m2_run2.nuc.txt

#NT
gggga	chr9:126154677-126155005(-)$1	328	123	128	15.0000
GGGGA	chr2:97535527-97535791(-)$1	264	6	11	15.0000
GGGGA	chr7:5635658-5635974(+)$1	316	178	183	15.0000
GGGGA	chr7:2145835-2146102(-)$1	267	51	56	15.0000
GGGGA	chr5:149110499-149110815(+)$1	316	109	114	15.0000
GGGGA	chr2:112023016-112023285(-)$1	269	148	153	15.0000
GGGGA	chr22:48178309-48178576(+)$1	267	101	106	15.0000
GGGGA	chr4:1239041-1239303(-)$1	262	86	91	15.0000
gggga	chr1:192962497-192962738(-)$1	241	133	138	15.0000
GGGGA	chr5:61629113-61629398(+)$1	285	1	6	15.0000
GGGGA	chr19:59084080-59084345(-)$1	265	22	27	15.0000
GGGGA	chr21:9913073-9913322(-)$1	249	108	113	15.0000
gggga	chr16:88563845-88564094(+)$1	249	3	8	15.0000
GGGGA	chr7:150798111-150798357(+)$1	246	223	228	15.0000
GGGGA	chr1:228582623-228582876(-)$1	253	108	113	15.0000
GGGGA	chr22:19873834-19874082(-)$1	248	22	27	15.0000
gggga	chr7:1894063-1894271(-)$1	208	88	93	15.0000
gggga	chr8:58125465-58125724(+)$1	259	194	199	15.0000
GGGGA	chr1:2215378-2215603(+)$1	225	3	8	15.0000
GGGGA	chr4:2414760-2415006(-)$1	246	108	113	15.0000
GGGGA	chr19:878320-878611(-)$1	291	130	135	15.0000
GGGGA	chr21:9913706-9913962(-)$1	256	130	135	15.0000
gggga	chr22:49856442-49856750(-)$1	308	150	155	15.0000
GGGGA	chr21:45349323-45349571(+)$1	248	218	223	15.0000
GGGGA	chr21:46700985-46701237(-)$1	252	150	155	15.0000
GGGGA	chr7:100731248-100731498(+)$1	250	97	102	15.0000
GGGGA	chr16:15237399-15237661(-)$1	262	243	248	15.0000
GGGGA	chr19:50354091-50354338(-)$1	247	61	66	15.0000
gggga	chr8:58125613-58125878(+)$1	265	46	51	15.0000
GGGGA	chr22:42608193-42608442(-)$1	249	210	215	15.0000
GGGGA	chr19:5587775-5588032(-)$1	257	55	60	15.0000
GGGGA	chr1:2324164-2324502(+)$1	338	121	126	15.0000
gggga	chr8:58115087-58115373(+)$1	286	140	145	15.0000
GGGGA	chr20:29520910-29521153(-)$1	243	66	71	15.0000
GGGGA	chr14:19889981-19890225(-)$1	244	29	34	15.0000
GGGGA	chr11:63849113-63849402(-)$1	289	99	104	15.0000
GGGGA	chr2:242447151-242447427(-)$1	276	79	84	15.0000
gggga	chr9:139724355-139724603(+)$1	248	21	26	15.0000
gggga	chr22:49932932-49933185(-)$1	253	180	185	15.0000
GGGGA	chr18:75695268-75695529(-)$1	261	2	7	15.0000
gggga	chr22:50013912-50014185(-)$1	273	106	111	15.0000
GGGGA	chr22:49859078-49859391(-)$1	313	184	189	15.0000
GGGGA	chr19:6060704-6061013(-)$1	309	5	10	15.0000
GGGGA	chr16:89022610-89022876(-)$1	266	31	36	15.0000
GGGGA	chr22:19878628-19878895(-)$1	267	53	58	15.0000
gggga	chr22:19762227-19762515(+)$1	288	93	98	15.0000
GGGGA	chr5:1805866-1806108(+)$1	242	5	10	15.0000
GGGGA	chr16:1422291-1422630(-)$1	339	124	129	15.0000
GGGGA	chr16:88836575-88836826(-)$1	251	116	121	15.0000
GGGGA	chr11:71614249-71614515(-)$1	266	44	49	15.0000
gggga	chr8:58120292-58120592(+)$1	300	41	46	15.0000
GGGGA	chr1:2210752-2211012(+)$1	260	197	202	15.0000
GGGGA	chr8:144342430-144342678(+)$1	248	154	159	15.0000
gggga	chr4:770538-770822(-)$1	284	93	98	15.0000
GGGGA	chrX:39953916-39954221(-)$1	305	154	159	15.0000
GGGGA	chr2:240886884-240887131(-)$1	247	107	112	15.0000

#otherMatches

#Struct PSSM
HH}AH	chr6:4947884-4948137(+)$1	253	238	243	15.0000
}CCCY	chr9:126154677-126155005(-)$1	328	123	128	15.0000
:BB{E	chr2:97535527-97535791(-)$1	264	6	11	15.0000
a]ccc	chr7:5635658-5635974(+)$1	316	178	183	15.0000
^^^^^	chr7:2145835-2146102(-)$1	267	51	56	15.0000
dddd4	chr5:149110499-149110815(+)$1	316	109	114	15.0000
e!!ii	chr2:112023016-112023285(-)$1	269	148	153	15.0000
#eeee	chr22:48178309-48178576(+)$1	267	101	106	15.0000
dddd#	chr4:1239041-1239303(-)$1	262	86	91	15.0000
cccnn	chr1:192962497-192962738(-)$1	241	133	138	15.0000
EEEE{	chr5:61629113-61629398(+)$1	285	1	6	15.0000
dddpp	chr19:59084080-59084345(-)$1	265	22	27	15.0000
ccmmm	chr21:9913073-9913322(-)$1	249	108	113	15.0000
{FFFF	chr16:88563845-88564094(+)$1	249	3	8	15.0000
FFFFF	chr7:150798111-150798357(+)$1	246	223	228	15.0000
dddd[	chr1:228582623-228582876(-)$1	253	108	113	15.0000
hhhhh	chr22:19873834-19874082(-)$1	248	22	27	15.0000
eee22	chr7:1894063-1894271(-)$1	208	88	93	15.0000
ccooo	chr8:58125465-58125724(+)$1	259	194	199	15.0000
HHHHH	chr1:2215378-2215603(+)$1	225	3	8	15.0000
JJJJJ	chr4:2414760-2415006(-)$1	246	108	113	15.0000
:::::	chr19:878320-878611(-)$1	291	130	135	15.0000
DDDDD	chr21:9913706-9913962(-)$1	256	130	135	15.0000
dddd!	chr22:49856442-49856750(-)$1	308	150	155	15.0000
h]bb2	chr21:45349323-45349571(+)$1	248	218	223	15.0000
dddd[	chr21:46700985-46701237(-)$1	252	150	155	15.0000
ccc!!	chr7:100731248-100731498(+)$1	250	97	102	15.0000
b]aee	chr16:15237399-15237661(-)$1	262	243	248	15.0000
GNNNN	chr19:50354091-50354338(-)$1	247	61	66	15.0000
ccooo	chr8:58125613-58125878(+)$1	265	46	51	15.0000
}BBEE	chr22:42608193-42608442(-)$1	249	210	215	15.0000
dd333	chr19:5587775-5588032(-)$1	257	55	60	15.0000
b$$$$	chr1:2324164-2324502(+)$1	338	121	126	15.0000
cc[ff	chr8:58115087-58115373(+)$1	286	140	145	15.0000
ccc[d	chr20:29520910-29521153(-)$1	243	66	71	15.0000
=====	chr14:19889981-19890225(-)$1	244	29	34	15.0000
ggggg	chr11:63849113-63849402(-)$1	289	99	104	15.0000
EEADD	chr2:242447151-242447427(-)$1	276	79	84	15.0000
iiiiu	chr9:139724355-139724603(+)$1	248	21	26	15.0000
!!bb%	chr22:49932932-49933185(-)$1	253	180	185	15.0000
ccc[d	chr18:75695268-75695529(-)$1	261	2	7	15.0000
dd:::	chr22:50013912-50014185(-)$1	273	106	111	15.0000
dddd]	chr22:49859078-49859391(-)$1	313	184	189	15.0000
hhhhh	chr19:6060704-6061013(-)$1	309	5	10	15.0000
===bb	chr16:89022610-89022876(-)$1	266	31	36	15.0000
:gggg	chr22:19878628-19878895(-)$1	267	53	58	15.0000
:HHHH	chr22:19762227-19762515(+)$1	288	93	98	15.0000
[bbnn	chr5:1805866-1806108(+)$1	242	5	10	15.0000
=====	chr16:1422291-1422630(-)$1	339	124	129	15.0000
FFFF:	chr16:88836575-88836826(-)$1	251	116	121	15.0000
[a[a[	chr11:71614249-71614515(-)$1	266	44	49	15.0000
b]ccc	chr8:58120292-58120592(+)$1	300	41	46	15.0000
GGGGG	chr1:2210752-2211012(+)$1	260	197	202	15.0000
diiii	chr8:144342430-144342678(+)$1	248	154	159	15.0000
ea!!b	chr4:770538-770822(-)$1	284	93	98	15.0000
dd]cc	chrX:39953916-39954221(-)$1	305	154	159	15.0000
:FFFF	chr2:240886884-240887131(-)$1	247	107	112	15.0000

#DB
)).))	chr6:4947884-4948137(+)$1	1	238	243	15.0000
.))).	chr9:126154677-126155005(-)$1	1	123	128	15.0000
.((.(	chr2:97535527-97535791(-)$1	1	6	11	15.0000
).)))	chr7:5635658-5635974(+)$1	1	178	183	15.0000
.....	chr7:2145835-2146102(-)$1	1	51	56	15.0000
)))).	chr5:149110499-149110815(+)$1	1	109	114	15.0000
(..((	chr2:112023016-112023285(-)$1	1	148	153	15.0000
.((((	chr22:48178309-48178576(+)$1	1	101	106	15.0000
((((.	chr4:1239041-1239303(-)$1	1	86	91	15.0000
(((..	chr1:192962497-192962738(-)$1	1	133	138	15.0000
((((.	chr5:61629113-61629398(+)$1	1	1	6	15.0000
(((..	chr19:59084080-59084345(-)$1	1	22	27	15.0000
((...	chr21:9913073-9913322(-)$1	1	108	113	15.0000
.((((	chr16:88563845-88564094(+)$1	1	3	8	15.0000
)))))	chr7:150798111-150798357(+)$1	1	223	228	15.0000
((((.	chr1:228582623-228582876(-)$1	1	108	113	15.0000
(((((	chr22:19873834-19874082(-)$1	1	22	27	15.0000
)))..	chr7:1894063-1894271(-)$1	1	88	93	15.0000
((...	chr8:58125465-58125724(+)$1	1	194	199	15.0000
(((((	chr1:2215378-2215603(+)$1	1	3	8	15.0000
(((((	chr4:2414760-2415006(-)$1	1	108	113	15.0000
.....	chr19:878320-878611(-)$1	1	130	135	15.0000
)))))	chr21:9913706-9913962(-)$1	1	130	135	15.0000
((((.	chr22:49856442-49856750(-)$1	1	150	155	15.0000
).)).	chr21:45349323-45349571(+)$1	1	218	223	15.0000
((((.	chr21:46700985-46701237(-)$1	1	150	155	15.0000
(((..	chr7:100731248-100731498(+)$1	1	97	102	15.0000
).)))	chr16:15237399-15237661(-)$1	1	243	248	15.0000
(....	chr19:50354091-50354338(-)$1	1	61	66	15.0000
((...	chr8:58125613-58125878(+)$1	1	46	51	15.0000
.))))	chr22:42608193-42608442(-)$1	1	210	215	15.0000
))...	chr19:5587775-5588032(-)$1	1	55	60	15.0000
(....	chr1:2324164-2324502(+)$1	1	121	126	15.0000
((.((	chr8:58115087-58115373(+)$1	1	140	145	15.0000
(((.(	chr20:29520910-29521153(-)$1	1	66	71	15.0000
(((((	chr14:19889981-19890225(-)$1	1	29	34	15.0000
(((((	chr11:63849113-63849402(-)$1	1	99	104	15.0000
(((((	chr2:242447151-242447427(-)$1	1	79	84	15.0000
((((.	chr9:139724355-139724603(+)$1	1	21	26	15.0000
..((.	chr22:49932932-49933185(-)$1	1	180	185	15.0000
(((.(	chr18:75695268-75695529(-)$1	1	2	7	15.0000
))...	chr22:50013912-50014185(-)$1	1	106	111	15.0000
)))).	chr22:49859078-49859391(-)$1	1	184	189	15.0000
(((((	chr19:6060704-6061013(-)$1	1	5	10	15.0000
(((((	chr16:89022610-89022876(-)$1	1	31	36	15.0000
.((((	chr22:19878628-19878895(-)$1	1	53	58	15.0000
.))))	chr22:19762227-19762515(+)$1	1	93	98	15.0000
.((..	chr5:1805866-1806108(+)$1	1	5	10	15.0000
)))))	chr16:1422291-1422630(-)$1	1	124	129	15.0000
)))).	chr16:88836575-88836826(-)$1	1	116	121	15.0000
.(.(.	chr11:71614249-71614515(-)$1	1	44	49	15.0000
).)))	chr8:58120292-58120592(+)$1	1	41	46	15.0000
)))))	chr1:2210752-2211012(+)$1	1	197	202	15.0000
)))))	chr8:144342430-144342678(+)$1	1	154	159	15.0000
((..(	chr4:770538-770822(-)$1	1	93	98	15.0000
)).))	chrX:39953916-39954221(-)$1	1	154	159	15.0000
.((((	chr2:240886884-240887131(-)$1	1	107	112	15.0000

#PSSM
G : 0.75	g : 0.24	
G : 0.75	g : 0.24	
G : 0.75	g : 0.24	
G : 0.75	g : 0.24	
A : 0.75	a : 0.24	

#score	855.0000000000001
#seq	57
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_transcript_m2_run2.nuc.txt

#NT
cuggcuuugg	chr5:112054043-112054320(+)$1	277	179	189	12.5892
cugucuuuuu	chr4:2001010-2001316(-)$1	306	106	116	18.3035
cucuUUUUGU	chr1:75187627-75187857(-)$1	230	95	105	13.8392
cuuccuuugu	chr12:23877781-23878018(-)$1	237	165	175	12.4999
auguuuuugu	chr17:26991836-26992163(+)$1	327	93	103	15.4464
CUGCCUUUGU	chr6:24181382-24181640(-)$1	258	243	253	16.4285
uuuuauuugu	chr17:26992172-26992405(+)$1	233	210	220	11.6071
cugucuuuau	chr1:78074666-78074918(-)$1	252	70	80	17.7678
CAGCCUUUGU	chr5:6726046-6726266(+)$1	220	102	112	12.4999
augucucugu	chr5:115215880-115216153(+)$1	273	4	14	13.4821
cucuauuugu	chr14:31039862-31040124(+)$1	262	57	67	13.3928
CUGUCUUCAU	chr2:134885211-134885463(+)$1	252	62	72	14.0178
cuguuuuggu	chr14:68490743-68491003(+)$1	260	196	206	14.6428
cagucuuugu	chr14:19863054-19863331(-)$1	277	175	185	16.6071
CAGUUUUUGU	chr12:26688752-26688958(-)$1	206	67	77	14.1071
cagucuuuga	chr17:15447513-15447797(-)$1	284	120	130	12.9464
CUGUUUUUAU	chr1:247480112-247480353(-)$1	241	182	192	15.2678
uuguuuuugu	chr2:239979549-239979799(-)$1	250	88	98	15.9821
cuguauuugu	chr8:38904635-38904919(+)$1	284	109	119	17.5892
UUGACUUUGU	chr5:14149956-14150250(+)$1	294	37	47	14.1071
UUGUCUUGGU	chr6:47584429-47584703(+)$1	274	202	212	15.0892
GUGUCUUUGU	chr3:25689783-25690039(-)$1	256	239	249	17.6785
CUGUCUUUGU	chr22:29331408-29331682(+)$1	274	123	133	20.5357
UUGUCUUUGC	chr22:21294899-21295141(+)$1	242	100	110	14.6428
CUGUCUUUGG	chr17:49285325-49285645(-)$1	320	41	51	16.9642
CUUCCUUUGU	chr6:2176944-2177320(-)$1	376	132	142	12.4999
cugucuuguu	chr11:107896772-107897057(+)$1	285	115	125	14.9107
CUGUCUCUGG	chr3:122838434-122838694(+)$1	260	249	259	12.4999
cuguguuuuu	chr7:110511293-110511620(-)$1	327	242	252	15.1785
cuuucuuugc	chr5:109185684-109185942(+)$1	258	179	189	12.7678
CAGUCUUUCU	chr7:43693917-43694201(-)$1	284	180	190	14.1071
uugucuuguu	chr1:91469186-91469461(-)$1	275	102	112	12.8571
cugucuuuug	chr13:33029558-33029827(-)$1	269	0	10	14.7321
augucuuucu	chr3:185398862-185399087(-)$1	225	154	164	15.4464
augucuuuuu	chr19:55745108-55745360(-)$1	252	193	203	15.7142
cugucuugga	chr2:173441416-173441683(+)$1	267	193	203	13.4821
GUGUCUAUGU	chr17:8503846-8504102(-)$1	256	8	18	13.2142
AUUUCUUUGU	chr2:153325936-153326228(+)$1	292	88	98	14.0178
UUGUCUUUCU	chr22:34224504-34224778(-)$1	274	183	193	15.9821
uugucuuuuu	chr6:160793267-160793513(+)$1	246	0	10	16.2499
CUGUCUAUAU	chr6:3392399-3392679(-)$1	280	13	23	13.3035
CUGUCUUCUU	chr3:171972376-171972630(+)$1	254	178	188	14.5535
cuguuuuggu	chr14:32085851-32086145(+)$1	294	11	21	14.6428
cuguauuucu	chr16:10543461-10543709(+)$1	248	19	29	15.0892
uugucuuccu	chr2:97402831-97403074(-)$1	243	125	135	12.2321
AAGUCUUUGU	chr14:32165662-32165918(+)$1	256	87	97	14.0178
uuguuuuuuu	chr3:196980102-196980389(-)$1	287	11	21	13.7499
cugucuugcu	chr14:32186390-32186666(+)$1	276	71	81	14.6428
cuguuuuagu	chr7:130632715-130632983(-)$1	268	143	153	14.1071
cugugauugu	chr8:25332197-25332472(+)$1	275	9	19	12.5892
gugucuuugu	chr11:10197491-10197767(-)$1	276	64	74	17.6785
uugucuuuga	chr20:60729150-60729399(+)$1	249	164	174	14.8214
CUGUGUUUGU	chr8:134285149-134285456(-)$1	307	35	45	17.4107
cuguauuucu	chr9:116826784-116827043(-)$1	259	178	188	15.0892
CUGUUUUUUG	chr18:33600002-33600332(-)$1	330	3	13	12.2321

#otherMatches

#Struct PSSM
ggeeeee[bb	chr4:113160609-113160840(+)$1	231	81	91	14.8214
cccdddd[cc	chr5:112054043-112054320(+)$1	277	179	189	12.5892
xxxxxxxxxx	chr4:2001010-2001316(-)$1	306	106	116	18.3035
:::CCCKKHH	chr1:75187627-75187857(-)$1	230	95	105	13.8392
B?????CCC/	chr12:23877781-23878018(-)$1	237	165	175	12.4999
hlllhhhhhh	chr17:26991836-26992163(+)$1	327	93	103	15.4464
HHHHHHH:::	chr6:24181382-24181640(-)$1	258	243	253	16.4285
::::::::::	chr17:26992172-26992405(+)$1	233	210	220	11.6071
::HHHHHHHH	chr1:78074666-78074918(-)$1	252	70	80	17.7678
"cccmmmmcc	chr5:6726046-6726266(+)$1	220	102	112	12.4999
::::::::::	chr5:115215880-115216153(+)$1	273	4	14	13.4821
dddqqqqqqq	chr14:31039862-31040124(+)$1	262	57	67	13.3928
GGGGGG:CCC	chr2:134885211-134885463(+)$1	252	62	72	14.0178
EEEZZZEEEE	chr14:68490743-68491003(+)$1	260	196	206	14.6428
ccc:::::::	chr14:19863054-19863331(-)$1	277	175	185	16.6071
e[dddd[bb[	chr12:26688752-26688958(-)$1	206	67	77	14.1071
eeee4444cc	chr17:15447513-15447797(-)$1	284	120	130	12.9464
beeeee[fff	chr1:247480112-247480353(-)$1	241	182	192	15.2678
eeeee"""dd	chr2:239979549-239979799(-)$1	250	88	98	15.9821
ggggggg$$$	chr8:38904635-38904919(+)$1	284	109	119	17.5892
gggggggeee	chr5:14149956-14150250(+)$1	294	37	47	14.1071
33bb22dddd	chr6:47584429-47584703(+)$1	274	202	212	15.0892
bbGGGGGGGY	chr3:25689783-25690039(-)$1	256	239	249	17.6785
mmeeeee:::	chr22:29331408-29331682(+)$1	274	123	133	20.5357
[bbrrrrrrr	chr22:21294899-21295141(+)$1	242	100	110	14.6428
BBKKGGGGGG	chr17:49285325-49285645(-)$1	320	41	51	16.9642
zzzzzzzzzz	chr6:2176944-2177320(-)$1	376	132	142	12.4999
wwwwwwwwww	chr11:107896772-107897057(+)$1	285	115	125	14.9107
IIIIIIIII:	chr3:122838434-122838694(+)$1	260	249	259	12.4999
ccc]ccc:::	chr7:110511293-110511620(-)$1	327	242	252	15.1785
::::gggggg	chr5:109185684-109185942(+)$1	258	179	189	12.7678
!!bboooooo	chr7:43693917-43694201(-)$1	284	180	190	14.1071
ooooooeeee	chr1:91469186-91469461(-)$1	275	102	112	12.8571
FFFFFF{FFF	chr13:33029558-33029827(-)$1	269	0	10	14.7321
iiii>>>>>>	chr3:185398862-185399087(-)$1	225	154	164	15.4464
d[a"""eeee	chr19:55745108-55745360(-)$1	252	193	203	15.7142
dddd::eeee	chr2:173441416-173441683(+)$1	267	193	203	13.4821
::::::eeee	chr17:8503846-8504102(-)$1	256	8	18	13.2142
FFFFFFLLLG	chr2:153325936-153326228(+)$1	292	88	98	14.0178
dddppppppp	chr22:34224504-34224778(-)$1	274	183	193	15.9821
::a[dddd""	chr6:160793267-160793513(+)$1	246	0	10	16.2499
CCC{FFFFFF	chr6:3392399-3392679(-)$1	280	13	23	13.3035
hhhhh]addd	chr3:171972376-171972630(+)$1	254	178	188	14.5535
mmmmffffff	chr14:32085851-32086145(+)$1	294	11	21	14.6428
NNCCCLLLCC	chr16:10543461-10543709(+)$1	248	19	29	15.0892
hh!!dddd[c	chr2:97402831-97403074(-)$1	243	125	135	12.2321
fffffccc[a	chr14:32165662-32165918(+)$1	256	87	97	14.0178
ccrrrrrrrr	chr3:196980102-196980389(-)$1	287	11	21	13.7499
tttttttbb]	chr14:32186390-32186666(+)$1	276	71	81	14.6428
ff666666gg	chr7:130632715-130632983(-)$1	268	143	153	14.1071
gggggg####	chr8:25332197-25332472(+)$1	275	9	19	12.5892
###ffffff#	chr11:10197491-10197767(-)$1	276	64	74	17.6785
IIII::iiii	chr20:60729150-60729399(+)$1	249	164	174	14.8214
EEEEbboooo	chr8:134285149-134285456(-)$1	307	35	45	17.4107
eee:::::::	chr9:116826784-116827043(-)$1	259	178	188	15.0892
::::::::::	chr18:33600002-33600332(-)$1	330	3	13	12.2321

#DB
))(((((.((	chr4:113160609-113160840(+)$1	1	81	91	14.8214
(((((((.((	chr5:112054043-112054320(+)$1	1	179	189	12.5892
..........	chr4:2001010-2001316(-)$1	1	106	116	18.3035
...(((..((	chr1:75187627-75187857(-)$1	1	95	105	13.8392
).....))).	chr12:23877781-23878018(-)$1	1	165	175	12.4999
(...))))))	chr17:26991836-26992163(+)$1	1	93	103	15.4464
)))))))...	chr6:24181382-24181640(-)$1	1	243	253	16.4285
..........	chr17:26992172-26992405(+)$1	1	210	220	11.6071
..((((((((	chr1:78074666-78074918(-)$1	1	70	80	17.7678
.(((....))	chr5:6726046-6726266(+)$1	1	102	112	12.4999
..........	chr5:115215880-115216153(+)$1	1	4	14	13.4821
(((.......	chr14:31039862-31040124(+)$1	1	57	67	13.3928
)))))).(((	chr2:134885211-134885463(+)$1	1	62	72	14.0178
)))...))))	chr14:68490743-68491003(+)$1	1	196	206	14.6428
))).......	chr14:19863054-19863331(-)$1	1	175	185	16.6071
(.((((.((.	chr12:26688752-26688958(-)$1	1	67	77	14.1071
))))....))	chr17:15447513-15447797(-)$1	1	120	130	12.9464
((((((.(((	chr1:247480112-247480353(-)$1	1	182	192	15.2678
(((((...((	chr2:239979549-239979799(-)$1	1	88	98	15.9821
(((((((...	chr8:38904635-38904919(+)$1	1	109	119	17.5892
((((((((((	chr5:14149956-14150250(+)$1	1	37	47	14.1071
..))..))))	chr6:47584429-47584703(+)$1	1	202	212	15.0892
))))))))).	chr3:25689783-25690039(-)$1	1	239	249	17.6785
..)))))...	chr22:29331408-29331682(+)$1	1	123	133	20.5357
.((.......	chr22:21294899-21295141(+)$1	1	100	110	14.6428
((..((((((	chr17:49285325-49285645(-)$1	1	41	51	16.9642
..........	chr6:2176944-2177320(-)$1	1	132	142	12.4999
..........	chr11:107896772-107897057(+)$1	1	115	125	14.9107
))))))))).	chr3:122838434-122838694(+)$1	1	249	259	12.4999
))).)))...	chr7:110511293-110511620(-)$1	1	242	252	15.1785
....((((((	chr5:109185684-109185942(+)$1	1	179	189	12.7678
..((......	chr7:43693917-43694201(-)$1	1	180	190	14.1071
......))))	chr1:91469186-91469461(-)$1	1	102	112	12.8571
((((((.(((	chr13:33029558-33029827(-)$1	1	0	10	14.7321
))))......	chr3:185398862-185399087(-)$1	1	154	164	15.4464
(.(...((((	chr19:55745108-55745360(-)$1	1	193	203	15.7142
))))..((((	chr2:173441416-173441683(+)$1	1	193	203	13.4821
......((((	chr17:8503846-8504102(-)$1	1	8	18	13.2142
((((((...(	chr2:153325936-153326228(+)$1	1	88	98	14.0178
(((.......	chr22:34224504-34224778(-)$1	1	183	193	15.9821
..(.((((..	chr6:160793267-160793513(+)$1	1	0	10	16.2499
(((.((((((	chr6:3392399-3392679(-)$1	1	13	23	13.3035
))))).))))	chr3:171972376-171972630(+)$1	1	178	188	14.5535
....))))))	chr14:32085851-32086145(+)$1	1	11	21	14.6428
..(((...((	chr16:10543461-10543709(+)$1	1	19	29	15.0892
((..((((.(	chr2:97402831-97403074(-)$1	1	125	135	12.2321
((((((((.(	chr14:32165662-32165918(+)$1	1	87	97	14.0178
((........	chr3:196980102-196980389(-)$1	1	11	21	13.7499
.......)).	chr14:32186390-32186666(+)$1	1	71	81	14.6428
))......))	chr7:130632715-130632983(-)$1	1	143	153	14.1071
((((((....	chr8:25332197-25332472(+)$1	1	9	19	12.5892
...((((((.	chr11:10197491-10197767(-)$1	1	64	74	17.6785
))))..((((	chr20:60729150-60729399(+)$1	1	164	174	14.8214
((((((....	chr8:134285149-134285456(-)$1	1	35	45	17.4107
))).......	chr9:116826784-116827043(-)$1	1	178	188	15.0892
..........	chr18:33600002-33600332(-)$1	1	3	13	12.2321

#PSSM
c : 0.37	C : 0.24	u : 0.14	a : 0.07	U : 0.07	G : 0.03	A : 0.03	g : 0.01	
u : 0.57	U : 0.32	A : 0.07	a : 0.03	
g : 0.51	G : 0.35	u : 0.05	c : 0.03	U : 0.03	
u : 0.57	U : 0.32	C : 0.05	g : 0.01	c : 0.01	A : 0.01	
c : 0.35	C : 0.32	u : 0.10	a : 0.08	U : 0.07	g : 0.03	G : 0.01	
u : 0.57	U : 0.41	a : 0.01	
u : 0.57	U : 0.35	A : 0.03	c : 0.01	C : 0.01	
u : 0.44	U : 0.35	g : 0.10	C : 0.03	G : 0.01	c : 0.01	a : 0.01	
g : 0.33	G : 0.28	u : 0.14	c : 0.08	A : 0.05	C : 0.03	U : 0.03	a : 0.01	
u : 0.46	U : 0.33	a : 0.07	G : 0.05	g : 0.03	C : 0.01	c : 0.01	

#score	822.678571428571
#seq	56
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_CDS_m2_run2.nuc.txt

#NT
GGCC	chr10:74451805-74452159(+)$1	354	19	23	12.0000
GGCC	chr2:99224759-99225068(-)$1	309	45	49	12.0000
GGCC	chr6:24666909-24667198(-)$1	289	63	67	12.0000
GGCC	chr20:32261954-32262239(-)$1	285	2	6	12.0000
GGCC	chr17:27620934-27621234(-)$1	300	172	176	12.0000
GGCC	chr22:42084665-42084957(-)$1	292	8	12	12.0000
GGCC	chr17:17494755-17495108(-)$1	353	39	43	12.0000
GGCC	chr3:156877766-156878040(-)$1	274	52	56	12.0000
GGCC	chr13:40229723-40230075(+)$1	352	36	40	12.0000
GGCC	chr1:154600224-154600500(-)$1	276	114	118	12.0000
GGCC	chr14:23790622-23790853(+)$1	231	5	9	12.0000
GGCC	chr16:89574717-89574989(+)$1	272	101	105	12.0000
ggcc	chr9:99145726-99146044(-)$1	318	60	64	12.0000
GGCC	chr17:17740016-17740311(-)$1	295	40	44	12.0000
GGCC	chr9:15307063-15307317(-)$1	254	10	14	12.0000
GGCC	chr17:74099610-74099942(-)$1	332	110	114	12.0000
ggcc	chr15:41709282-41709547(+)$1	265	5	9	12.0000
GGCC	chr2:10829875-10830145(-)$1	270	57	61	12.0000
GGCC	chr9:133569067-133569333(+)$1	266	40	44	12.0000
GGCC	chr9:131418710-131419056(-)$1	346	73	77	12.0000
GGCC	chr17:15903001-15903325(+)$1	324	74	78	12.0000
GGCC	chr3:38178319-38178688(-)$1	369	57	61	12.0000
GGCC	chr11:85339538-85339842(+)$1	304	10	14	12.0000
GGCC	chr19:36001159-36001465(-)$1	306	30	34	12.0000
GGCC	chr2:44222958-44223229(-)$1	271	190	194	12.0000
GGCC	chr3:5163878-5164188(+)$1	310	17	21	12.0000
ggcc	chr2:216946331-216946595(-)$1	264	3	7	12.0000
GGCC	chr2:38604214-38604519(-)$1	305	33	37	12.0000
GGCC	chr11:18548223-18548557(-)$1	334	34	38	12.0000
GGCC	chr1:11866189-11866459(+)$1	270	35	39	12.0000
GGCC	chr17:76183385-76183601(+)$1	216	21	25	12.0000
ggcc	chr1:22263548-22263817(-)$1	269	8	12	12.0000
GGCC	chr9:111882050-111882311(-)$1	261	120	124	12.0000
GGCC	chr1:24306631-24306946(-)$1	315	136	140	12.0000
GGCC	chr9:131133546-131133804(+)$1	258	194	198	12.0000
GGCC	chr1:11796094-11796387(+)$1	293	65	69	12.0000
GGCC	chr4:184365697-184366118(+)$1	421	134	138	12.0000
GGCC	chr5:6632955-6633261(-)$1	306	56	60	12.0000
GGCC	chr16:23652340-23652597(-)$1	257	40	44	12.0000
GGCC	chr2:10829813-10830075(-)$1	262	168	172	12.0000
GGCC	chr16:68002301-68002619(-)$1	318	20	24	12.0000
GGCC	chr2:85788402-85788694(-)$1	292	29	33	12.0000
GGCC	chr11:27528158-27528416(-)$1	258	51	55	12.0000
GGCC	chr21:30396889-30397189(+)$1	300	44	48	12.0000
GGCC	chr7:72992647-72993008(-)$1	361	5	9	12.0000
GGCC	chr11:68816303-68816587(+)$1	284	203	207	12.0000
GGCC	chr7:916095-916398(+)$1	303	86	90	12.0000
GGCC	chr7:150777690-150778000(-)$1	310	154	158	12.0000
ggcc	chr6:3118865-3119124(+)$1	259	47	51	12.0000
GGCC	chr4:2263568-2263930(-)$1	362	38	42	12.0000
GGCC	chr6:3259097-3259420(+)$1	323	46	50	12.0000
GGCC	chr17:4458430-4458672(-)$1	242	10	14	12.0000
GGCC	chr1:155904024-155904286(-)$1	262	20	24	12.0000
GGCC	chr17:37844082-37844404(-)$1	322	139	143	12.0000
GGCC	chr7:132766567-132766928(-)$1	361	113	117	12.0000
GGCC	chr13:33859628-33859898(-)$1	270	189	193	12.0000
GGCC	chr3:122785919-122786153(+)$1	234	9	13	12.0000
GGCC	chr11:71814139-71814462(-)$1	323	46	50	12.0000
GGCC	chr7:99006030-99006320(-)$1	290	24	28	12.0000
GGCC	chr3:111451211-111451574(+)$1	363	68	72	12.0000
GGCC	chr15:75660779-75661049(-)$1	270	93	97	12.0000
GGCC	chr15:62352370-62352634(-)$1	264	177	181	12.0000
GGCC	chr1:226111639-226111957(-)$1	318	167	171	12.0000
ggcc	chr7:1014890-1015251(-)$1	361	4	8	12.0000
GGCC	chr10:76871307-76871593(+)$1	286	100	104	12.0000
GGCC	chr12:54069709-54069961(-)$1	252	42	46	12.0000
GGCC	chr19:14640360-14640627(+)$1	267	13	17	12.0000
GGCC	chr10:15210447-15210782(-)$1	335	120	124	12.0000
ggcc	chr21:33765050-33765415(-)$1	365	19	23	12.0000
GGCC	chr12:57472340-57472661(-)$1	321	179	183	12.0000
GGCC	chr16:4401105-4401369(-)$1	264	82	86	12.0000
ggcc	chr18:47340038-47340359(-)$1	321	59	63	12.0000
ggcc	chr7:22396570-22396856(-)$1	286	27	31	12.0000
ggcc	chr9:86153000-86153416(-)$1	416	110	114	12.0000
GGCC	chr2:44589130-44589385(+)$1	255	101	105	12.0000
GGCC	chr16:1823123-1823430(+)$1	307	22	26	12.0000
GGCC	chr16:28962289-28962578(+)$1	289	67	71	12.0000
GGCC	chr21:46221520-46221829(-)$1	309	70	74	12.0000
GGCC	chr10:12077291-12077541(-)$1	250	225	229	12.0000
ggcc	chr17:38975031-38975393(-)$1	362	62	66	12.0000
GGCC	chr19:59010391-59010681(-)$1	290	43	47	12.0000
GGCC	chr19:58193360-58193655(+)$1	295	19	23	12.0000
GGCC	chr16:56553656-56554034(-)$1	378	140	144	12.0000
ggcc	chr12:65004212-65004522(+)$1	310	6	10	12.0000
ggcc	chr12:122150596-122150919(+)$1	323	6	10	12.0000
GGCC	chr16:31044967-31045257(+)$1	290	116	120	12.0000
GGCC	chr19:49458703-49458921(+)$1	218	24	28	12.0000
GGCC	chr17:75303120-75303363(+)$1	243	64	68	12.0000
GGCC	chrX:16737668-16737956(+)$1	288	20	24	12.0000
GGCC	chr10:91404784-91405060(-)$1	276	98	102	12.0000
GGCC	chr8:100025887-100026130(+)$1	243	0	4	12.0000
GGCC	chr2:128283862-128284160(-)$1	298	2	6	12.0000
GGCC	chr11:93474453-93474704(-)$1	251	7	11	12.0000
GGCC	chr5:59995768-59996013(-)$1	245	72	76	12.0000

#otherMatches

#Struct PSSM
ccce	chr17:56084391-56084623(-)$1	232	29	33	12.0000
D{GG	chr10:74451805-74452159(+)$1	354	19	23	12.0000
DDDB	chr2:99224759-99225068(-)$1	309	45	49	12.0000
:ggg	chr6:24666909-24667198(-)$1	289	63	67	12.0000
eeec	chr20:32261954-32262239(-)$1	285	2	6	12.0000
ccc2	chr17:27620934-27621234(-)$1	300	172	176	12.0000
eeee	chr22:42084665-42084957(-)$1	292	8	12	12.0000
::bb	chr17:17494755-17495108(-)$1	353	39	43	12.0000
FFFF	chr3:156877766-156878040(-)$1	274	52	56	12.0000
eeee	chr13:40229723-40230075(+)$1	352	36	40	12.0000
ffff	chr1:154600224-154600500(-)$1	276	114	118	12.0000
[ddd	chr14:23790622-23790853(+)$1	231	5	9	12.0000
EEEE	chr16:89574717-89574989(+)$1	272	101	105	12.0000
FFCC	chr9:99145726-99146044(-)$1	318	60	64	12.0000
!hhh	chr17:17740016-17740311(-)$1	295	40	44	12.0000
CCC{	chr9:15307063-15307317(-)$1	254	10	14	12.0000
ffff	chr17:74099610-74099942(-)$1	332	110	114	12.0000
"ccc	chr15:41709282-41709547(+)$1	265	5	9	12.0000
hbbb	chr2:10829875-10830145(-)$1	270	57	61	12.0000
GGGG	chr9:133569067-133569333(+)$1	266	40	44	12.0000
[ccc	chr9:131418710-131419056(-)$1	346	73	77	12.0000
FFFF	chr17:15903001-15903325(+)$1	324	74	78	12.0000
dFFF	chr3:38178319-38178688(-)$1	369	57	61	12.0000
oocc	chr11:85339538-85339842(+)$1	304	10	14	12.0000
b[af	chr19:36001159-36001465(-)$1	306	30	34	12.0000
hhh:	chr2:44222958-44223229(-)$1	271	190	194	12.0000
JJ::	chr3:5163878-5164188(+)$1	310	17	21	12.0000
ddde	chr2:216946331-216946595(-)$1	264	3	7	12.0000
e22a	chr2:38604214-38604519(-)$1	305	33	37	12.0000
gggg	chr11:18548223-18548557(-)$1	334	34	38	12.0000
ddd:	chr1:11866189-11866459(+)$1	270	35	39	12.0000
]ccc	chr17:76183385-76183601(+)$1	216	21	25	12.0000
!!hh	chr1:22263548-22263817(-)$1	269	8	12	12.0000
ccc]	chr9:111882050-111882311(-)$1	261	120	124	12.0000
ggmm	chr1:24306631-24306946(-)$1	315	136	140	12.0000
CFFF	chr9:131133546-131133804(+)$1	258	194	198	12.0000
2eee	chr1:11796094-11796387(+)$1	293	65	69	12.0000
hhhh	chr4:184365697-184366118(+)$1	421	134	138	12.0000
ffff	chr5:6632955-6633261(-)$1	306	56	60	12.0000
ffee	chr16:23652340-23652597(-)$1	257	40	44	12.0000
ccc]	chr2:10829813-10830075(-)$1	262	168	172	12.0000
:eee	chr16:68002301-68002619(-)$1	318	20	24	12.0000
qfff	chr2:85788402-85788694(-)$1	292	29	33	12.0000
H{BB	chr11:27528158-27528416(-)$1	258	51	55	12.0000
oooo	chr21:30396889-30397189(+)$1	300	44	48	12.0000
:CCC	chr7:72992647-72993008(-)$1	361	5	9	12.0000
lddd	chr11:68816303-68816587(+)$1	284	203	207	12.0000
dmmm	chr7:916095-916398(+)$1	303	86	90	12.0000
]ccc	chr7:150777690-150778000(-)$1	310	154	158	12.0000
dfff	chr6:3118865-3119124(+)$1	259	47	51	12.0000
====	chr4:2263568-2263930(-)$1	362	38	42	12.0000
hhhh	chr6:3259097-3259420(+)$1	323	46	50	12.0000
DDD:	chr17:4458430-4458672(-)$1	242	10	14	12.0000
[eee	chr1:155904024-155904286(-)$1	262	20	24	12.0000
CCC{	chr17:37844082-37844404(-)$1	322	139	143	12.0000
BBBB	chr7:132766567-132766928(-)$1	361	113	117	12.0000
gBBC	chr13:33859628-33859898(-)$1	270	189	193	12.0000
FFKK	chr3:122785919-122786153(+)$1	234	9	13	12.0000
DKKB	chr11:71814139-71814462(-)$1	323	46	50	12.0000
eee"	chr7:99006030-99006320(-)$1	290	24	28	12.0000
]===	chr3:111451211-111451574(+)$1	363	68	72	12.0000
hh22	chr15:75660779-75661049(-)$1	270	93	97	12.0000
HHHH	chr15:62352370-62352634(-)$1	264	177	181	12.0000
IIII	chr1:226111639-226111957(-)$1	318	167	171	12.0000
CFFF	chr7:1014890-1015251(-)$1	361	4	8	12.0000
dddg	chr10:76871307-76871593(+)$1	286	100	104	12.0000
dddd	chr12:54069709-54069961(-)$1	252	42	46	12.0000
[fff	chr19:14640360-14640627(+)$1	267	13	17	12.0000
B}DD	chr10:15210447-15210782(-)$1	335	120	124	12.0000
hhhp	chr21:33765050-33765415(-)$1	365	19	23	12.0000
iiii	chr12:57472340-57472661(-)$1	321	179	183	12.0000
emmm	chr16:4401105-4401369(-)$1	264	82	86	12.0000
fffm	chr18:47340038-47340359(-)$1	321	59	63	12.0000
HHHH	chr7:22396570-22396856(-)$1	286	27	31	12.0000
:ccc	chr9:86153000-86153416(-)$1	416	110	114	12.0000
gggc	chr2:44589130-44589385(+)$1	255	101	105	12.0000
GGGG	chr16:1823123-1823430(+)$1	307	22	26	12.0000
====	chr16:28962289-28962578(+)$1	289	67	71	12.0000
eeee	chr21:46221520-46221829(-)$1	309	70	74	12.0000
GG~~	chr10:12077291-12077541(-)$1	250	225	229	12.0000
dddd	chr17:38975031-38975393(-)$1	362	62	66	12.0000
[fff	chr19:59010391-59010681(-)$1	290	43	47	12.0000
eeee	chr19:58193360-58193655(+)$1	295	19	23	12.0000
ffff	chr16:56553656-56554034(-)$1	378	140	144	12.0000
GGG{	chr12:65004212-65004522(+)$1	310	6	10	12.0000
:===	chr12:122150596-122150919(+)$1	323	6	10	12.0000
cc22	chr16:31044967-31045257(+)$1	290	116	120	12.0000
ccc[	chr19:49458703-49458921(+)$1	218	24	28	12.0000
[ddd	chr17:75303120-75303363(+)$1	243	64	68	12.0000
FFFF	chrX:16737668-16737956(+)$1	288	20	24	12.0000
[eee	chr10:91404784-91405060(-)$1	276	98	102	12.0000
eeee	chr8:100025887-100026130(+)$1	243	0	4	12.0000
JJJJ	chr2:128283862-128284160(-)$1	298	2	6	12.0000
====	chr11:93474453-93474704(-)$1	251	7	11	12.0000
HHFF	chr5:59995768-59996013(-)$1	245	72	76	12.0000

#DB
((((	chr17:56084391-56084623(-)$1	1	29	33	12.0000
(.((	chr10:74451805-74452159(+)$1	1	19	23	12.0000
((((	chr2:99224759-99225068(-)$1	1	45	49	12.0000
.(((	chr6:24666909-24667198(-)$1	1	63	67	12.0000
((((	chr20:32261954-32262239(-)$1	1	2	6	12.0000
))).	chr17:27620934-27621234(-)$1	1	172	176	12.0000
((((	chr22:42084665-42084957(-)$1	1	8	12	12.0000
..((	chr17:17494755-17495108(-)$1	1	39	43	12.0000
((((	chr3:156877766-156878040(-)$1	1	52	56	12.0000
((((	chr13:40229723-40230075(+)$1	1	36	40	12.0000
((((	chr1:154600224-154600500(-)$1	1	114	118	12.0000
.(((	chr14:23790622-23790853(+)$1	1	5	9	12.0000
((((	chr16:89574717-89574989(+)$1	1	101	105	12.0000
((((	chr9:99145726-99146044(-)$1	1	60	64	12.0000
.(((	chr17:17740016-17740311(-)$1	1	40	44	12.0000
(((.	chr9:15307063-15307317(-)$1	1	10	14	12.0000
((((	chr17:74099610-74099942(-)$1	1	110	114	12.0000
.(((	chr15:41709282-41709547(+)$1	1	5	9	12.0000
((((	chr2:10829875-10830145(-)$1	1	57	61	12.0000
((((	chr9:133569067-133569333(+)$1	1	40	44	12.0000
.(((	chr9:131418710-131419056(-)$1	1	73	77	12.0000
((((	chr17:15903001-15903325(+)$1	1	74	78	12.0000
)(((	chr3:38178319-38178688(-)$1	1	57	61	12.0000
..))	chr11:85339538-85339842(+)$1	1	10	14	12.0000
(.((	chr19:36001159-36001465(-)$1	1	30	34	12.0000
))).	chr2:44222958-44223229(-)$1	1	190	194	12.0000
((..	chr3:5163878-5164188(+)$1	1	17	21	12.0000
((((	chr2:216946331-216946595(-)$1	1	3	7	12.0000
)..)	chr2:38604214-38604519(-)$1	1	33	37	12.0000
((((	chr11:18548223-18548557(-)$1	1	34	38	12.0000
))).	chr1:11866189-11866459(+)$1	1	35	39	12.0000
.)))	chr17:76183385-76183601(+)$1	1	21	25	12.0000
..((	chr1:22263548-22263817(-)$1	1	8	12	12.0000
))).	chr9:111882050-111882311(-)$1	1	120	124	12.0000
((..	chr1:24306631-24306946(-)$1	1	136	140	12.0000
))))	chr9:131133546-131133804(+)$1	1	194	198	12.0000
.)))	chr1:11796094-11796387(+)$1	1	65	69	12.0000
((((	chr4:184365697-184366118(+)$1	1	134	138	12.0000
((((	chr5:6632955-6633261(-)$1	1	56	60	12.0000
))((	chr16:23652340-23652597(-)$1	1	40	44	12.0000
))).	chr2:10829813-10830075(-)$1	1	168	172	12.0000
.(((	chr16:68002301-68002619(-)$1	1	20	24	12.0000
.)))	chr2:85788402-85788694(-)$1	1	29	33	12.0000
(.((	chr11:27528158-27528416(-)$1	1	51	55	12.0000
....	chr21:30396889-30397189(+)$1	1	44	48	12.0000
.(((	chr7:72992647-72993008(-)$1	1	5	9	12.0000
.)))	chr11:68816303-68816587(+)$1	1	203	207	12.0000
(...	chr7:916095-916398(+)$1	1	86	90	12.0000
.)))	chr7:150777690-150778000(-)$1	1	154	158	12.0000
((((	chr6:3118865-3119124(+)$1	1	47	51	12.0000
((((	chr4:2263568-2263930(-)$1	1	38	42	12.0000
((((	chr6:3259097-3259420(+)$1	1	46	50	12.0000
(((.	chr17:4458430-4458672(-)$1	1	10	14	12.0000
.(((	chr1:155904024-155904286(-)$1	1	20	24	12.0000
(((.	chr17:37844082-37844404(-)$1	1	139	143	12.0000
((((	chr7:132766567-132766928(-)$1	1	113	117	12.0000
))))	chr13:33859628-33859898(-)$1	1	189	193	12.0000
((..	chr3:122785919-122786153(+)$1	1	9	13	12.0000
(..(	chr11:71814139-71814462(-)$1	1	46	50	12.0000
(((.	chr7:99006030-99006320(-)$1	1	24	28	12.0000
.)))	chr3:111451211-111451574(+)$1	1	68	72	12.0000
))..	chr15:75660779-75661049(-)$1	1	93	97	12.0000
))))	chr15:62352370-62352634(-)$1	1	177	181	12.0000
))))	chr1:226111639-226111957(-)$1	1	167	171	12.0000
((((	chr7:1014890-1015251(-)$1	1	4	8	12.0000
((((	chr10:76871307-76871593(+)$1	1	100	104	12.0000
))))	chr12:54069709-54069961(-)$1	1	42	46	12.0000
.(((	chr19:14640360-14640627(+)$1	1	13	17	12.0000
).))	chr10:15210447-15210782(-)$1	1	120	124	12.0000
(((.	chr21:33765050-33765415(-)$1	1	19	23	12.0000
((((	chr12:57472340-57472661(-)$1	1	179	183	12.0000
(...	chr16:4401105-4401369(-)$1	1	82	86	12.0000
(((.	chr18:47340038-47340359(-)$1	1	59	63	12.0000
((((	chr7:22396570-22396856(-)$1	1	27	31	12.0000
.(((	chr9:86153000-86153416(-)$1	1	110	114	12.0000
((((	chr2:44589130-44589385(+)$1	1	101	105	12.0000
((((	chr16:1823123-1823430(+)$1	1	22	26	12.0000
((((	chr16:28962289-28962578(+)$1	1	67	71	12.0000
((((	chr21:46221520-46221829(-)$1	1	70	74	12.0000
))..	chr10:12077291-12077541(-)$1	1	225	229	12.0000
((((	chr17:38975031-38975393(-)$1	1	62	66	12.0000
.(((	chr19:59010391-59010681(-)$1	1	43	47	12.0000
))))	chr19:58193360-58193655(+)$1	1	19	23	12.0000
((((	chr16:56553656-56554034(-)$1	1	140	144	12.0000
(((.	chr12:65004212-65004522(+)$1	1	6	10	12.0000
.(((	chr12:122150596-122150919(+)$1	1	6	10	12.0000
))..	chr16:31044967-31045257(+)$1	1	116	120	12.0000
(((.	chr19:49458703-49458921(+)$1	1	24	28	12.0000
.(((	chr17:75303120-75303363(+)$1	1	64	68	12.0000
((((	chrX:16737668-16737956(+)$1	1	20	24	12.0000
.(((	chr10:91404784-91405060(-)$1	1	98	102	12.0000
((((	chr8:100025887-100026130(+)$1	1	0	4	12.0000
((((	chr2:128283862-128284160(-)$1	1	2	6	12.0000
((((	chr11:93474453-93474704(-)$1	1	7	11	12.0000
))((	chr5:59995768-59996013(-)$1	1	72	76	12.0000

#PSSM
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
C : 0.86	c : 0.13	
C : 0.86	c : 0.13	

#score	1140.0000000000002
#seq	95
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_transcript_m1_run1.nuc.txt

#NT
gcgagaggucccggguucaaaucccgg	chr16:3232527-3232732(-)$1	205	63	90	56.5000
cccagguggcccggguucgacucccgg	chr13:41634772-41634975(-)$1	203	67	94	40.9000
gcgagaggucccggguucaaaucccgg	chr16:3241939-3242143(+)$1	204	86	113	56.5000
gcacgaggccccggguucaauccccgg	chr6:28806141-28806345(-)$1	204	90	117	46.3000
ccgccgcggcccggguucgauucccgg	chr1:17199038-17199256(+)$1	218	76	103	37.5000
ucccagggucguggguucgagccccac	chr15:79152863-79153074(+)$1	211	78	105	34.3000
gcgagaggucccggguucaaaucccgg	chr14:21077395-21077622(-)$1	227	93	120	56.5000
cccagguggcccggguucgacucccgg	chr13:41634780-41634997(-)$1	217	89	116	40.9000
ucucagggucguggguucgagccccac	chr16:3207317-3207521(-)$1	204	81	108	33.4000
gcgagaggucccggguucaaaucccgg	chr16:3232550-3232754(-)$1	204	85	112	56.5000
gcgagaggucccggguucaaaucccgg	chr16:3241943-3242152(+)$1	209	82	109	56.5000
gcgaaagguccccgguucgaucccggg	chr19:4724558-4724762(-)$1	204	81	108	42.8000
gccagggauuguggguucgagucccac	chr17:73029950-73030193(+)$1	243	88	115	34.4000
ucucagggucguggguucgagccccac	chr16:3207310-3207517(-)$1	207	77	104	33.4000
ucucagggucguggguucgagccccac	chr16:3207295-3207510(-)$1	215	70	97	33.4000
gcacgaggccccggguucaauccccgg	chr6:28806136-28806341(-)$1	205	86	113	46.3000
gcgagaggucccggguucaaaucccgg	chr14:21077383-21077591(-)$1	208	62	89	56.5000
gcgagaggucccggguucaaaucccgg	chr16:3232558-3232766(-)$1	208	97	124	56.5000
ccgccgcggcccggguucgauucccgg	chr1:17199031-17199238(+)$1	207	83	110	37.5000
gcgagaggucccggguucaaaucccgg	chr17:8126047-8126274(-)$1	227	89	116	56.5000
gcacgaggccccggguucaauccccgg	chr6:28806110-28806324(-)$1	214	69	96	46.3000
gcgagaggucccggguucaaaucccgg	chr16:3232537-3232750(-)$1	213	81	108	56.5000
gcgagaggucccggguucaaaucccgg	chr16:3232554-3232758(-)$1	204	89	116	56.5000
gccagggauuguggguucgagucccac	chr17:73029939-73030150(+)$1	211	99	126	34.4000
gcgagaggucccggguucaaaucccgg	chr14:21077391-21077595(-)$1	204	66	93	56.5000
acaggagauccuggguucgaaucccag	chr19:33667912-33668148(+)$1	236	89	116	39.2000
uucaaagguuccggguucgagucccgg	chr1:94313100-94313325(+)$1	225	78	105	41.4000
ucccagggucguggguucgagccccac	chr14:58706495-58706737(-)$1	242	90	117	34.3000
gcacgaggccccggguucaauccccgg	chr6:28806124-28806332(-)$1	208	77	104	46.3000
gcgaaagguccccgguucgaucccggg	chr19:4724531-4724758(-)$1	227	77	104	42.8000
gcgagaggucccggguucaaaucccgg	chr16:3239588-3239792(+)$1	204	82	109	56.5000
gcgagaggucccggguucaaaucccgg	chr16:3241952-3242176(+)$1	224	73	100	56.5000
gcgagaggucccggguucaaaucccgg	chr16:3232532-3232737(-)$1	205	68	95	56.5000
ucccagggucguggguucgagccccac	chr15:79152874-79153088(+)$1	214	67	94	34.3000
ucaagagguccccgguucaaauccggg	chr17:37309887-37310102(-)$1	215	81	108	44.8000
gccagggauuguggguucgagucccau	chr7:139025411-139025632(+)$1	221	72	99	33.6000
gcgaaagguccccgguucgaucccggg	chr19:4724562-4724772(-)$1	210	91	118	42.8000
gcgagaggucccggguucaaaucccgg	chr16:3241937-3242139(+)$1	202	88	115	56.5000
ucccagggucguggguucgagccccac	chr15:79152859-79153063(+)$1	204	82	109	34.3000
cccagguggcccggguucgacucccgg	chr13:41634759-41634972(-)$1	213	64	91	40.9000
ucucagggucguggguucgagccccac	chr16:3241458-3241680(+)$1	222	80	107	33.4000
gccagggauuguggguucgagucccau	chr7:139025391-139025611(+)$1	220	92	119	33.6000
gcgagaggucccggguucaaaucccgg	chr16:3239604-3239820(+)$1	216	66	93	56.5000
gcgagaggucccggguucaaaucccgg	chr16:3239592-3239804(+)$1	212	78	105	56.5000
gcgagaggucccggguucaaaucccgg	chr17:8126037-8126247(-)$1	210	62	89	56.5000
ucaagagguccccgguucaaauccggg	chr17:37309870-37310087(-)$1	217	66	93	44.8000
gcgagaggucccggguucaaaucccgg	chr16:3239569-3239780(+)$1	211	101	128	56.5000
uucaaagguuccggguucgagucccgg	chr1:94313096-94313300(+)$1	204	82	109	41.4000
gcacgaggccccggguucaauccccgg	chr6:28806132-28806336(-)$1	204	81	108	46.3000

#otherMatches

#Struct PSSM
CCC{FFFFFFeeeeepppppppeeeee	chr16:3239580-3239788(+)$1	208	90	117	56.5000
H{FFFFFF::eeeeepppppppeeeee	chr16:3232527-3232732(-)$1	205	63	90	56.5000
peeeee::::eeeeepppppppeeeee	chr13:41634772-41634975(-)$1	203	67	94	40.9000
ffffff]ccceeeeepppppppeeeee	chr16:3241939-3242143(+)$1	204	86	113	56.5000
ff::dddd!!eeeeepppppppeeeee	chr6:28806141-28806345(-)$1	204	90	117	46.3000
fffffffffff[aa"""hhhhhhhhnn	chr1:17199038-17199256(+)$1	218	76	103	37.5000
$ddddoooooodddd333ccc]dddd]	chr15:79152863-79153074(+)$1	211	78	105	34.3000
gggggggdddd[cccpppppppcccdd	chr14:21077395-21077622(-)$1	227	93	120	56.5000
peeeee333bb333ccc]dddd4444i	chr13:41634780-41634997(-)$1	217	89	116	40.9000
ppppffffffeeeeepppppppeeeee	chr16:3207317-3207521(-)$1	204	81	108	33.4000
gggggggdddd[cccpppppppcccdd	chr16:3232550-3232754(-)$1	204	85	112	56.5000
ffffff]ccceeeeepppppppeeeee	chr16:3241943-3242152(+)$1	209	82	109	56.5000
c]ccc::CCCZZZEEEEE::::::HHH	chr19:4724558-4724762(-)$1	204	81	108	42.8000
eeeee:::::eeeeepppppppeeeee	chr17:73029950-73030193(+)$1	243	88	115	34.4000
ppppffffffeeeeepppppppeeeee	chr16:3207310-3207517(-)$1	207	77	104	33.4000
ppppffffffeeeeepppppppeeeee	chr16:3207295-3207510(-)$1	215	70	97	33.4000
ff::dddd!!eeeeepppppppeeeee	chr6:28806136-28806341(-)$1	205	86	113	46.3000
gggggggdddd[cccpppppppcccdd	chr14:21077383-21077591(-)$1	208	62	89	56.5000
gggggggdddd[cccpppppppcccdd	chr16:3232558-3232766(-)$1	208	97	124	56.5000
pddddffffff[aa"""hhhhhhhhnn	chr1:17199031-17199238(+)$1	207	83	110	37.5000
gggggggdddd[cccpppppppcccdd	chr17:8126047-8126274(-)$1	227	89	116	56.5000
ff::dddd!!eeeeepppppppeeeee	chr6:28806110-28806324(-)$1	214	69	96	46.3000
gggggggdddd[cccpppppppcccdd	chr16:3232537-3232750(-)$1	213	81	108	56.5000
gggggggdddd[cccpppppppcccdd	chr16:3232554-3232758(-)$1	204	89	116	56.5000
eeeee:::::eeeeepppppppeeeee	chr17:73029939-73030150(+)$1	211	99	126	34.4000
gggggggdddd[cccpppppppcccdd	chr14:21077391-21077595(-)$1	204	66	93	56.5000
FKKEEEEE::eeeeepppppppeeeee	chr19:33667912-33668148(+)$1	236	89	116	39.2000
&&&&&ccc####ccc!!ccc[cccmmm	chr1:94313100-94313325(+)$1	225	78	105	41.4000
$ddddoooooodddd333ccc]dddd:	chr14:58706495-58706737(-)$1	242	90	117	34.3000
ff::dddd!!eeeeepppppppeeeee	chr6:28806124-28806332(-)$1	208	77	104	46.3000
c]ccc::CCCZZZEEEEE::::::HHH	chr19:4724531-4724758(-)$1	227	77	104	42.8000
CCC{FFFFFFeeeeepppppppeeeee	chr16:3239588-3239792(+)$1	204	82	109	56.5000
ffffff]ccceeeeepppppppeeeee	chr16:3241952-3242176(+)$1	224	73	100	56.5000
H{FFFFFF::eeeeepppppppeeeee	chr16:3232532-3232737(-)$1	205	68	95	56.5000
$ddddoooooodddd333ccc]dddd]	chr15:79152874-79153088(+)$1	214	67	94	34.3000
ddmmmmddddeeeeepppppppeeeee	chr17:37309887-37310102(-)$1	215	81	108	44.8000
b"""ffffffrrrrrrrrrffffff22	chr7:139025411-139025632(+)$1	221	72	99	33.6000
c]dddd55555eeeee88888888eee	chr19:4724562-4724772(-)$1	210	91	118	42.8000
ffffff]ccceeeeepppppppeeeee	chr16:3241937-3242139(+)$1	202	88	115	56.5000
$ddddoooooodddd333ccc]dddd:	chr15:79152859-79153063(+)$1	204	82	109	34.3000
peeeee333bb333ccc]dddd4444i	chr13:41634759-41634972(-)$1	213	64	91	40.9000
ppppffffff]a22dddd::ddddooo	chr16:3241458-3241680(+)$1	222	80	107	33.4000
oooodddd::eeeeepppppppeeeee	chr7:139025391-139025611(+)$1	220	92	119	33.6000
BBKKFFFFFFeeeeepppppppeeeee	chr16:3239604-3239820(+)$1	216	66	93	56.5000
CCC{FFFFFFeeeeepppppppeeeee	chr16:3239592-3239804(+)$1	212	78	105	56.5000
gggggggdddd[cccpppppppcccdd	chr17:8126037-8126247(-)$1	210	62	89	56.5000
ddmmmmddddeeeeepppppppeeeee	chr17:37309870-37310087(-)$1	217	66	93	44.8000
CCC{FFFFFFeeeeepppppppeeeee	chr16:3239569-3239780(+)$1	211	101	128	56.5000
&&&&&ccc####ccc!!ccc[cccmmm	chr1:94313096-94313300(+)$1	204	82	109	41.4000
ff::dddd!!eeeeepppppppeeeee	chr6:28806132-28806336(-)$1	204	81	108	46.3000

#DB
(((.(((((((((((.......)))))	chr16:3239580-3239788(+)$1	1	90	117	56.5000
(.((((((..(((((.......)))))	chr16:3232527-3232732(-)$1	1	63	90	56.5000
.)))))....(((((.......)))))	chr13:41634772-41634975(-)$1	1	67	94	40.9000
)))))).)))(((((.......)))))	chr16:3241939-3242143(+)$1	1	86	113	56.5000
))..((((..(((((.......)))))	chr6:28806141-28806345(-)$1	1	90	117	46.3000
)))))((((((.((...((((((((..	chr1:17199038-17199256(+)$1	1	76	103	37.5000
.((((......))))...))).)))).	chr15:79152863-79153074(+)$1	1	78	105	34.3000
)))))))((((.(((.......)))))	chr14:21077395-21077622(-)$1	1	93	120	56.5000
.)))))...))...))).))))....)	chr13:41634780-41634997(-)$1	1	89	116	40.9000
....))))))(((((.......)))))	chr16:3207317-3207521(-)$1	1	81	108	33.4000
)))))))((((.(((.......)))))	chr16:3232550-3232754(-)$1	1	85	112	56.5000
)))))).)))(((((.......)))))	chr16:3241943-3242152(+)$1	1	82	109	56.5000
).)))..)))...)))))......(((	chr19:4724558-4724762(-)$1	1	81	108	42.8000
))))).....(((((.......)))))	chr17:73029950-73030193(+)$1	1	88	115	34.4000
....))))))(((((.......)))))	chr16:3207310-3207517(-)$1	1	77	104	33.4000
....))))))(((((.......)))))	chr16:3207295-3207510(-)$1	1	70	97	33.4000
))..((((..(((((.......)))))	chr6:28806136-28806341(-)$1	1	86	113	46.3000
)))))))((((.(((.......)))))	chr14:21077383-21077591(-)$1	1	62	89	56.5000
)))))))((((.(((.......)))))	chr16:3232558-3232766(-)$1	1	97	124	56.5000
.))))((((((.((...((((((((..	chr1:17199031-17199238(+)$1	1	83	110	37.5000
)))))))((((.(((.......)))))	chr17:8126047-8126274(-)$1	1	89	116	56.5000
))..((((..(((((.......)))))	chr6:28806110-28806324(-)$1	1	69	96	46.3000
)))))))((((.(((.......)))))	chr16:3232537-3232750(-)$1	1	81	108	56.5000
)))))))((((.(((.......)))))	chr16:3232554-3232758(-)$1	1	89	116	56.5000
))))).....(((((.......)))))	chr17:73029939-73030150(+)$1	1	99	126	34.4000
)))))))((((.(((.......)))))	chr14:21077391-21077595(-)$1	1	66	93	56.5000
(..(((((..(((((.......)))))	chr19:33667912-33668148(+)$1	1	89	116	39.2000
.....(((....(((..(((.(((...	chr1:94313100-94313325(+)$1	1	78	105	41.4000
.((((......))))...))).)))).	chr14:58706495-58706737(-)$1	1	90	117	34.3000
))..((((..(((((.......)))))	chr6:28806124-28806332(-)$1	1	77	104	46.3000
).)))..)))...)))))......(((	chr19:4724531-4724758(-)$1	1	77	104	42.8000
(((.(((((((((((.......)))))	chr16:3239588-3239792(+)$1	1	82	109	56.5000
)))))).)))(((((.......)))))	chr16:3241952-3242176(+)$1	1	73	100	56.5000
(.((((((..(((((.......)))))	chr16:3232532-3232737(-)$1	1	68	95	56.5000
.((((......))))...))).)))).	chr15:79152874-79153088(+)$1	1	67	94	34.3000
((....))))(((((.......)))))	chr17:37309887-37310102(-)$1	1	81	108	44.8000
(...((((((.........))))))..	chr7:139025411-139025632(+)$1	1	72	99	33.6000
).)))).....)))))........)))	chr19:4724562-4724772(-)$1	1	91	118	42.8000
)))))).)))(((((.......)))))	chr16:3241937-3242139(+)$1	1	88	115	56.5000
.((((......))))...))).)))).	chr15:79152859-79153063(+)$1	1	82	109	34.3000
.)))))...))...))).))))....)	chr13:41634759-41634972(-)$1	1	64	91	40.9000
....)))))).)..))))..((((...	chr16:3241458-3241680(+)$1	1	80	107	33.4000
....))))..(((((.......)))))	chr7:139025391-139025611(+)$1	1	92	119	33.6000
((..(((((((((((.......)))))	chr16:3239604-3239820(+)$1	1	66	93	56.5000
(((.(((((((((((.......)))))	chr16:3239592-3239804(+)$1	1	78	105	56.5000
)))))))((((.(((.......)))))	chr17:8126037-8126247(-)$1	1	62	89	56.5000
((....))))(((((.......)))))	chr17:37309870-37310087(-)$1	1	66	93	44.8000
(((.(((((((((((.......)))))	chr16:3239569-3239780(+)$1	1	101	128	56.5000
.....(((....(((..(((.(((...	chr1:94313096-94313300(+)$1	1	82	109	41.4000
))..((((..(((((.......)))))	chr6:28806132-28806336(-)$1	1	81	108	46.3000

#PSSM
g : 0.64	u : 0.23	c : 0.10	a : 0.02	
c : 0.96	u : 0.04	
g : 0.50	c : 0.25	a : 0.16	u : 0.08	
a : 0.68	c : 0.30	g : 0.02	
g : 0.70	a : 0.25	c : 0.04	
a : 0.66	g : 0.34	
g : 0.90	u : 0.06	c : 0.04	
g : 0.90	a : 0.10	
u : 0.80	g : 0.10	c : 0.10	
c : 0.88	u : 0.12	
c : 0.76	g : 0.23	
c : 0.74	u : 0.25	
g : 0.90	c : 0.10	
g : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
a : 0.54	g : 0.46	
a : 1.00	
a : 0.46	g : 0.27	u : 0.19	c : 0.06	
u : 0.68	c : 0.32	
c : 1.00	
c : 1.00	
c : 0.90	g : 0.10	
g : 0.74	a : 0.25	
g : 0.76	c : 0.19	u : 0.04	

#score	2306.0000000000005
#seq	50
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_UTR_m1_run1.nuc.txt

#NT
AAGCUGAAAAAG	chr1:154148588-154148825(-)$1	237	204	216	20.7916
aagaugaagaag	chr13:31035369-31035667(-)$1	298	127	139	29.7499
AAGAAGAAGAAG	chr7:148514851-148515175(-)$1	324	165	177	27.4583
AGGAGGAAGAAG	chr3:196214164-196214498(-)$1	334	125	137	24.0208
aagaugaagaaa	chr2:29169490-29169768(+)$1	278	57	69	25.7916
AGGAUGAAGAUG	chr8:117861117-117861339(-)$1	222	69	81	23.2916
aagaggaagaag	chr2:232576578-232576793(+)$1	215	67	79	27.6666
AAGGUGAAGAAG	chr11:2972907-2973141(-)$1	234	109	121	25.5833
AAGAUGAAGAAA	chr12:76449798-76450042(-)$1	244	141	153	25.7916
AAGGGGAAGAAG	chr12:76442879-76443126(-)$1	247	97	109	23.4999
AAGAUGAUGAAG	chr1:150198838-150199203(-)$1	365	85	97	25.5833
AUGAUGAAGAAG	chr12:76443451-76443666(-)$1	215	102	114	25.8958
AAGAUGAAGAAG	chr14:73572478-73572888(+)$1	410	237	249	29.7499
aagaugaagaag	chr19:14199895-14200272(-)$1	377	156	168	29.7499
CAGAUGAAGAAG	chr12:76453476-76453689(-)$1	213	89	101	24.9583
aagaggaagaag	chr17:4575288-4575634(-)$1	346	23	35	27.6666
AAGAUGAAGAAG	chr15:69072648-69072912(-)$1	264	143	155	29.7499
AGGAUGAAGAUG	chr8:117861083-117861293(-)$1	210	23	35	23.2916
aagaggaagaag	chr5:179151579-179151835(+)$1	256	136	148	27.6666
aagaagaagaag	chr14:102550990-102551265(-)$1	275	86	98	27.4583
AAGAUGAGGAAG	chr2:232577052-232577257(+)$1	205	121	133	25.4791
aagaugaagaug	chr4:174253120-174253330(-)$1	210	59	71	26.9375
aagaagaagaag	chr14:102550922-102551190(-)$1	268	11	23	27.4583
AAGAAGCAGAAG	chr15:66791638-66791889(-)$1	251	28	40	22.8749
AAGUAGAAGAAG	chr17:48820972-48821274(+)$1	302	119	131	23.0833
AAGAAGCAGAAG	chr17:48823800-48824131(+)$1	331	117	129	22.8749
aagaugaagaag	chr8:124382090-124382367(-)$1	277	217	229	29.7499
aagaggaagaag	chr2:232576551-232576778(+)$1	227	94	106	27.6666
AAGAUGAGGAAG	chr17:61869671-61869993(+)$1	322	108	120	25.4791
aagaggaagaag	chr2:232576505-232576751(+)$1	246	140	152	27.6666
aagaggaagaaa	chr17:48823045-48823374(+)$1	329	165	177	23.7083
AGGAUGAAGAUG	chr8:117861093-117861317(-)$1	224	47	59	23.2916
AUGAUGAAGAUG	chr15:69075220-69075494(-)$1	274	111	123	23.0833
aagaugaagaag	chr8:124381972-124382290(-)$1	318	140	152	29.7499
aagaugaagaug	chr4:174253130-174253339(-)$1	209	68	80	26.9375
AAGAUGAAGAUG	chr3:170584050-170584361(-)$1	311	161	173	26.9375
AAGAAGAAGCAG	chr11:110108154-110108476(-)$1	322	156	168	22.8749
AAGAAGAAGGAG	chr1:150192894-150193164(-)$1	270	98	110	22.8749
AAGAUGAAGAAA	chr12:76449748-76449967(-)$1	219	66	78	25.7916
AAGAUGAAGAAA	chr12:76449767-76449998(-)$1	231	97	109	25.7916
AAGGGGAAGAAG	chr14:56103064-56103359(+)$1	295	192	204	23.4999
AAGAUGAAGUAG	chr4:76580851-76581155(-)$1	304	107	119	25.1666
aagaugaagagg	chr11:129991472-129991771(+)$1	299	175	187	26.0000
aggaggaagaag	chr9:100777601-100777856(+)$1	255	44	56	24.0208
aagaugaagaug	chr4:174253025-174253320(-)$1	295	49	61	26.9375
AAGAUGAUGAUG	chr12:76444282-76444534(-)$1	252	207	219	22.7708
AUGAUGAAAAAG	chr14:21679339-21679565(-)$1	226	116	128	21.3124

#otherMatches

#Struct PSSM
fffff55555ii	chr1:150902372-150902774(+)$1	402	192	204	22.7708
EEEYYDDDD}EE	chr1:154148588-154148825(-)$1	237	204	216	20.7916
[eeeee####ff	chr13:31035369-31035667(-)$1	298	127	139	29.7499
::::::::::dd	chr7:148514851-148515175(-)$1	324	165	177	27.4583
!a^^^^^^^^^^	chr3:196214164-196214498(-)$1	334	125	137	24.0208
::::::::::::	chr2:29169490-29169768(+)$1	278	57	69	25.7916
ll==========	chr8:117861117-117861339(-)$1	222	69	81	23.2916
"""iiiiiiiii	chr2:232576578-232576793(+)$1	215	67	79	27.6666
eee4444ggggg	chr11:2972907-2973141(-)$1	234	109	121	25.5833
55ggggggg22d	chr12:76449798-76450042(-)$1	244	141	153	25.7916
33hhhhhhhhFF	chr12:76442879-76443126(-)$1	247	97	109	23.4999
]ggggggg>>>>	chr1:150198838-150199203(-)$1	365	85	97	25.5833
oooobb]fffff	chr12:76443451-76443666(-)$1	215	102	114	25.8958
DDDDEEEEENNN	chr14:73572478-73572888(+)$1	410	237	249	29.7499
::::::::::::	chr19:14199895-14200272(-)$1	377	156	168	29.7499
bb!!annnnna2	chr12:76453476-76453689(-)$1	213	89	101	24.9583
LLLCCC::::::	chr17:4575288-4575634(-)$1	346	23	35	27.6666
dccc!!ffffff	chr15:69072648-69072912(-)$1	264	143	155	29.7499
ll==========	chr8:117861083-117861293(-)$1	210	23	35	23.2916
22dddd::::::	chr5:179151579-179151835(+)$1	256	136	148	27.6666
^^^^^^^^^^^^	chr14:102550990-102551265(-)$1	275	86	98	27.4583
????GGGGGGGY	chr2:232577052-232577257(+)$1	205	121	133	25.4791
::::::::::::	chr4:174253120-174253330(-)$1	210	59	71	26.9375
BFFFFFFDDDDB	chr14:102550922-102551190(-)$1	268	11	23	27.4583
OOOOOOJJJJJJ	chr15:66791638-66791889(-)$1	251	28	40	22.8749
:::::::::::b	chr17:48820972-48821274(+)$1	302	119	131	23.0833
dddd]ccc22ee	chr17:48823800-48824131(+)$1	331	117	129	22.8749
~~~DDDDYYDDD	chr8:124382090-124382367(-)$1	277	217	229	29.7499
"""iiiiiiiii	chr2:232576551-232576778(+)$1	227	94	106	27.6666
d]ccc]ffffff	chr17:61869671-61869993(+)$1	322	108	120	25.4791
"""iiiiiiiii	chr2:232576505-232576751(+)$1	246	140	152	27.6666
::::::::::::	chr17:48823045-48823374(+)$1	329	165	177	23.7083
ll==========	chr8:117861093-117861317(-)$1	224	47	59	23.2916
ffpppppppfff	chr15:69075220-69075494(-)$1	274	111	123	23.0833
:::::::::::g	chr8:124381972-124382290(-)$1	318	140	152	29.7499
DDDPPPPPPPDD	chr4:174253130-174253339(-)$1	209	68	80	26.9375
qqqqqqqqccc]	chr3:170584050-170584361(-)$1	311	161	173	26.9375
:::::::eeeee	chr11:110108154-110108476(-)$1	322	156	168	22.8749
!!eeeeeooooo	chr1:150192894-150193164(-)$1	270	98	110	22.8749
cc]bb:::::::	chr12:76449748-76449967(-)$1	219	66	78	25.7916
55ggggggg:::	chr12:76449767-76449998(-)$1	231	97	109	25.7916
!hhhhhhhh"""	chr14:56103064-56103359(+)$1	295	192	204	23.4999
[eeeee^^^^^^	chr4:76580851-76581155(-)$1	304	107	119	25.1666
!!==========	chr11:129991472-129991771(+)$1	299	175	187	26.0000
ggg22bb333cc	chr9:100777601-100777856(+)$1	255	44	56	24.0208
:::::::a[ccc	chr4:174253025-174253320(-)$1	295	49	61	26.9375
FFFFFZZZFFFF	chr12:76444282-76444534(-)$1	252	207	219	22.7708
mdddd]bb5555	chr14:21679339-21679565(-)$1	226	116	128	21.3124

#DB
))))).....))	chr1:150902372-150902774(+)$1	1	192	204	22.7708
)))..)))).))	chr1:154148588-154148825(-)$1	1	204	216	20.7916
.(((((....((	chr13:31035369-31035667(-)$1	1	127	139	29.7499
..........((	chr7:148514851-148515175(-)$1	1	165	177	27.4583
.(..........	chr3:196214164-196214498(-)$1	1	125	137	24.0208
............	chr2:29169490-29169768(+)$1	1	57	69	25.7916
..))))))))))	chr8:117861117-117861339(-)$1	1	69	81	23.2916
...(((((((((	chr2:232576578-232576793(+)$1	1	67	79	27.6666
)))....)))))	chr11:2972907-2973141(-)$1	1	109	121	25.5833
..)))))))..)	chr12:76449798-76450042(-)$1	1	141	153	25.7916
..))))))))((	chr12:76442879-76443126(-)$1	1	97	109	23.4999
.)))))))....	chr1:150198838-150199203(-)$1	1	85	97	25.5833
....)).)))))	chr12:76443451-76443666(-)$1	1	102	114	25.8958
(((((((((...	chr14:73572478-73572888(+)$1	1	237	249	29.7499
............	chr19:14199895-14200272(-)$1	1	156	168	29.7499
((..(.....).	chr12:76453476-76453689(-)$1	1	89	101	24.9583
...(((......	chr17:4575288-4575634(-)$1	1	23	35	27.6666
)(((..((((((	chr15:69072648-69072912(-)$1	1	143	155	29.7499
..))))))))))	chr8:117861083-117861293(-)$1	1	23	35	23.2916
..))))......	chr5:179151579-179151835(+)$1	1	136	148	27.6666
............	chr14:102550990-102551265(-)$1	1	86	98	27.4583
....))))))).	chr2:232577052-232577257(+)$1	1	121	133	25.4791
............	chr4:174253120-174253330(-)$1	1	59	71	26.9375
((((((((((((	chr14:102550922-102551190(-)$1	1	11	23	27.4583
......((((((	chr15:66791638-66791889(-)$1	1	28	40	22.8749
...........(	chr17:48820972-48821274(+)$1	1	119	131	23.0833
)))).)))..))	chr17:48823800-48824131(+)$1	1	117	129	22.8749
...))))..)))	chr8:124382090-124382367(-)$1	1	217	229	29.7499
...(((((((((	chr2:232576551-232576778(+)$1	1	94	106	27.6666
).))).))))))	chr17:61869671-61869993(+)$1	1	108	120	25.4791
...(((((((((	chr2:232576505-232576751(+)$1	1	140	152	27.6666
............	chr17:48823045-48823374(+)$1	1	165	177	23.7083
..))))))))))	chr8:117861093-117861317(-)$1	1	47	59	23.2916
((.......)))	chr15:69075220-69075494(-)$1	1	111	123	23.0833
...........(	chr8:124381972-124382290(-)$1	1	140	152	29.7499
(((.......((	chr4:174253130-174253339(-)$1	1	68	80	26.9375
........))).	chr3:170584050-170584361(-)$1	1	161	173	26.9375
.......(((((	chr11:110108154-110108476(-)$1	1	156	168	22.8749
..(((((.....	chr1:150192894-150193164(-)$1	1	98	110	22.8749
)).)).......	chr12:76449748-76449967(-)$1	1	66	78	25.7916
..)))))))...	chr12:76449767-76449998(-)$1	1	97	109	25.7916
.((((((((...	chr14:56103064-56103359(+)$1	1	192	204	23.4999
.(((((......	chr4:76580851-76581155(-)$1	1	107	119	25.1666
..((((((((((	chr11:129991472-129991771(+)$1	1	175	187	26.0000
)))..))...))	chr9:100777601-100777856(+)$1	1	44	56	24.0208
.......(.(((	chr4:174253025-174253320(-)$1	1	49	61	26.9375
)))))...))))	chr12:76444282-76444534(-)$1	1	207	219	22.7708
.)))).))....	chr14:21679339-21679565(-)$1	1	116	128	21.3124

#PSSM
A : 0.60	a : 0.37	C : 0.02	
A : 0.47	a : 0.35	G : 0.08	U : 0.06	g : 0.02	
G : 0.62	g : 0.37	
A : 0.52	a : 0.37	G : 0.06	C : 0.02	U : 0.02	
U : 0.43	u : 0.18	g : 0.14	A : 0.12	G : 0.06	a : 0.04	
G : 0.62	g : 0.37	
A : 0.58	a : 0.37	C : 0.04	
A : 0.52	a : 0.37	U : 0.06	G : 0.04	
G : 0.58	g : 0.37	A : 0.04	
A : 0.56	a : 0.37	C : 0.02	G : 0.02	U : 0.02	
A : 0.47	a : 0.29	U : 0.14	u : 0.06	g : 0.02	
G : 0.56	g : 0.33	A : 0.06	a : 0.04	

#score	1228.2083333333333
#seq	48
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_CDS_m2_run2.nuc.txt

#NT
AGGA	chrM:14158-14379(-)$1	221	4	8	11.9999
AGGA	chr4:79203876-79204116(+)$1	240	95	99	11.9999
AGGA	chr11:47772703-47772940(-)$1	237	122	126	11.9999
AGGA	chr2:32727819-32728050(+)$1	231	1	5	11.9999
AGGA	chr7:127670441-127670752(+)$1	311	199	203	11.9999
AGGA	chr11:62297246-62297511(-)$1	265	20	24	11.9999
AGGA	chr6:7581126-7581364(+)$1	238	20	24	11.9999
AGGA	chr2:97482045-97482326(+)$1	281	84	88	11.9999
AGGA	chr7:77166718-77166977(+)$1	259	3	7	11.9999
AGGA	chr1:234565831-234566068(-)$1	237	19	23	11.9999
AGGA	chr1:19436787-19437001(-)$1	214	92	96	11.9999
AGGA	chr10:121341870-121342115(-)$1	245	155	159	11.9999
AGGA	chr2:232325100-232325324(-)$1	224	82	86	11.9999
AGGA	chrX:53585611-53585837(-)$1	226	112	116	11.9999
AGGA	chr14:21549699-21549937(+)$1	238	6	10	11.9999
AGGA	chr17:35634764-35634998(-)$1	234	140	144	11.9999
AGGA	chr12:133373042-133373316(-)$1	274	46	50	11.9999
AGGA	chr6:4031987-4032273(+)$1	286	141	145	11.9999
AGGA	chrX:70783204-70783450(+)$1	246	84	88	11.9999
AGGA	chr6:111136175-111136406(-)$1	231	3	7	11.9999
AGGA	chr9:711127-711390(+)$1	263	138	142	11.9999
AGGA	chr2:232325124-232325376(-)$1	252	40	44	11.9999
AGGA	chr1:160209636-160209976(-)$1	340	11	15	11.9999
AGGA	chr5:94813926-94814181(-)$1	255	61	65	11.9999
AGGA	chr1:19423607-19423841(-)$1	234	79	83	11.9999
agga	chr14:39649931-39650202(+)$1	271	0	4	11.9999
AGGA	chr20:43029847-43030126(+)$1	279	43	47	11.9999
AGGA	chr1:245021930-245022165(-)$1	235	56	60	11.9999
AGGA	chr2:61528130-61528392(-)$1	262	124	128	11.9999
AGGA	chr12:104333190-104333423(+)$1	233	41	45	11.9999
AGGA	chr22:36684243-36684488(-)$1	245	54	58	11.9999
AGGA	chr5:43292487-43292695(-)$1	208	83	87	11.9999
AGGA	chr17:79860510-79860762(-)$1	252	172	176	11.9999
AGGA	chr9:116999160-116999413(+)$1	253	26	30	11.9999
AGGA	chr2:54197726-54198021(-)$1	295	23	27	11.9999
AGGA	chr7:5410406-5410641(-)$1	235	189	193	11.9999
AGGA	chr12:6710452-6710690(-)$1	238	224	228	11.9999
AGGA	chr4:79176295-79176622(+)$1	327	130	134	11.9999
AGGA	chr12:53849568-53849780(+)$1	212	1	5	11.9999
AGGA	chr17:46048405-46048652(+)$1	247	1	5	11.9999
AGGA	chr19:6740919-6741154(+)$1	235	99	103	11.9999
AGGA	chr6:90458841-90459107(-)$1	266	37	41	11.9999
AGGA	chr15:28514379-28514625(-)$1	246	15	19	11.9999
AGGA	chr3:38207235-38207502(+)$1	267	76	80	11.9999
AGGA	chr6:56380149-56380464(-)$1	315	203	207	11.9999
AGGA	chr8:100147142-100147464(+)$1	322	35	39	11.9999
AGGA	chrM:14392-14601(-)$1	209	153	157	11.9999
AGGA	chrM:14214-14418(-)$1	204	43	47	11.9999
AGGA	chr10:21875122-21875377(+)$1	255	122	126	11.9999
AGGA	chrM:14254-14466(-)$1	212	18	22	11.9999
AGGA	chr6:144768770-144769017(+)$1	247	28	32	11.9999
AGGA	chr3:184102284-184102582(+)$1	298	122	126	11.9999
AGGA	chr9:117050635-117050857(+)$1	222	57	61	11.9999
AGGA	chr12:26875231-26875449(-)$1	218	56	60	11.9999
AGGA	chr9:131356392-131356708(+)$1	316	174	178	11.9999
AGGA	chr1:35652736-35652953(-)$1	217	82	86	11.9999
AGGA	chrX:70787742-70788012(+)$1	270	98	102	11.9999
AGGA	chr2:44055034-44055303(-)$1	269	173	177	11.9999
AGGA	chr16:66783065-66783317(-)$1	252	144	148	11.9999
AGGA	chr15:28375266-28375549(-)$1	283	33	37	11.9999
AGGA	chr11:62289397-62289628(-)$1	231	15	19	11.9999
AGGA	chrM:14184-14391(-)$1	207	16	20	11.9999
AGGA	chr6:158487517-158487763(+)$1	246	55	59	11.9999
agga	chr16:70292955-70293183(-)$1	228	37	41	11.9999
AGGA	chr12:120568891-120569126(-)$1	235	103	107	11.9999
AGGA	chr14:31618187-31618425(-)$1	238	147	151	11.9999
AGGA	chr1:234565868-234566117(-)$1	249	68	72	11.9999
AGGA	chr10:93713504-93713728(+)$1	224	30	34	11.9999
AGGA	chr1:35652704-35652936(-)$1	232	65	69	11.9999
AGGA	chr2:55570683-55570960(-)$1	277	30	34	11.9999
AGGA	chrM:14239-14451(-)$1	212	3	7	11.9999
AGGA	chr6:144783812-144784045(+)$1	233	105	109	11.9999
AGGA	chr14:102496493-102496719(+)$1	226	24	28	11.9999
AGGA	chr5:75967525-75967797(+)$1	272	78	82	11.9999
AGGA	chr1:19484299-19484560(-)$1	261	88	92	11.9999
AGGA	chr3:99568471-99568726(-)$1	255	83	87	11.9999
AGGA	chr18:55278768-55279021(-)$1	253	80	84	11.9999
AGGA	chr1:19474991-19475210(-)$1	219	197	201	11.9999
AGGA	chr2:61411764-61412033(+)$1	269	37	41	11.9999
AGGA	chrX:70784478-70784699(+)$1	221	207	211	11.9999
AGGA	chr1:39824376-39824646(+)$1	270	3	7	11.9999
AGGA	chr12:26777132-26777377(-)$1	245	52	56	11.9999
AGGA	chr15:28510663-28510905(-)$1	242	37	41	11.9999
AGGA	chr2:63086281-63086524(+)$1	243	208	212	11.9999
AGGA	chr5:14291004-14291264(+)$1	260	10	14	11.9999
AGGA	chr6:144803336-144803553(+)$1	217	33	37	11.9999

#otherMatches

#Struct PSSM
ccc[	chr3:184102705-184102959(+)$1	254	119	123	11.9999
::::	chrM:14158-14379(-)$1	221	4	8	11.9999
QQDD	chr4:79203876-79204116(+)$1	240	95	99	11.9999
HHHH	chr11:47772703-47772940(-)$1	237	122	126	11.9999
::::	chr2:32727819-32728050(+)$1	231	1	5	11.9999
eee]	chr7:127670441-127670752(+)$1	311	199	203	11.9999
:bb[	chr11:62297246-62297511(-)$1	265	20	24	11.9999
eeee	chr6:7581126-7581364(+)$1	238	20	24	11.9999
:::e	chr2:97482045-97482326(+)$1	281	84	88	11.9999
CCC{	chr7:77166718-77166977(+)$1	259	3	7	11.9999
iii[	chr1:234565831-234566068(-)$1	237	19	23	11.9999
###e	chr1:19436787-19437001(-)$1	214	92	96	11.9999
cc!!	chr10:121341870-121342115(-)$1	245	155	159	11.9999
dddd	chr2:232325100-232325324(-)$1	224	82	86	11.9999
yyyy	chrX:53585611-53585837(-)$1	226	112	116	11.9999
mmmm	chr14:21549699-21549937(+)$1	238	6	10	11.9999
:DDD	chr17:35634764-35634998(-)$1	234	140	144	11.9999
F:::	chr12:133373042-133373316(-)$1	274	46	50	11.9999
qqqq	chr6:4031987-4032273(+)$1	286	141	145	11.9999
DDD:	chrX:70783204-70783450(+)$1	246	84	88	11.9999
::::	chr6:111136175-111136406(-)$1	231	3	7	11.9999
LDDD	chr9:711127-711390(+)$1	263	138	142	11.9999
(((f	chr2:232325124-232325376(-)$1	252	40	44	11.9999
ffcc	chr1:160209636-160209976(-)$1	340	11	15	11.9999
lccc	chr5:94813926-94814181(-)$1	255	61	65	11.9999
eeee	chr1:19423607-19423841(-)$1	234	79	83	11.9999
::::	chr14:39649931-39650202(+)$1	271	0	4	11.9999
[a!!	chr20:43029847-43030126(+)$1	279	43	47	11.9999
offf	chr1:245021930-245022165(-)$1	235	56	60	11.9999
gggg	chr2:61528130-61528392(-)$1	262	124	128	11.9999
mbb]	chr12:104333190-104333423(+)$1	233	41	45	11.9999
b]cc	chr22:36684243-36684488(-)$1	245	54	58	11.9999
^eee	chr5:43292487-43292695(-)$1	208	83	87	11.9999
9999	chr17:79860510-79860762(-)$1	252	172	176	11.9999
bb[c	chr9:116999160-116999413(+)$1	253	26	30	11.9999
pppp	chr2:54197726-54198021(-)$1	295	23	27	11.9999
mma4	chr7:5410406-5410641(-)$1	235	189	193	11.9999
:FFF	chr12:6710452-6710690(-)$1	238	224	228	11.9999
eeee	chr4:79176295-79176622(+)$1	327	130	134	11.9999
ffff	chr12:53849568-53849780(+)$1	212	1	5	11.9999
::::	chr17:46048405-46048652(+)$1	247	1	5	11.9999
pddd	chr19:6740919-6741154(+)$1	235	99	103	11.9999
ffff	chr6:90458841-90459107(-)$1	266	37	41	11.9999
JJJJ	chr15:28514379-28514625(-)$1	246	15	19	11.9999
::::	chr3:38207235-38207502(+)$1	267	76	80	11.9999
]eee	chr6:56380149-56380464(-)$1	315	203	207	11.9999
mddd	chr8:100147142-100147464(+)$1	322	35	39	11.9999
bb22	chrM:14392-14601(-)$1	209	153	157	11.9999
a[ee	chrM:14214-14418(-)$1	204	43	47	11.9999
$$$$	chr10:21875122-21875377(+)$1	255	122	126	11.9999
dddd	chrM:14254-14466(-)$1	212	18	22	11.9999
!fff	chr6:144768770-144769017(+)$1	247	28	32	11.9999
:ccc	chr3:184102284-184102582(+)$1	298	122	126	11.9999
[ccc	chr9:117050635-117050857(+)$1	222	57	61	11.9999
cc$$	chr12:26875231-26875449(-)$1	218	56	60	11.9999
GGGG	chr9:131356392-131356708(+)$1	316	174	178	11.9999
::::	chr1:35652736-35652953(-)$1	217	82	86	11.9999
hhhh	chrX:70787742-70788012(+)$1	270	98	102	11.9999
4fff	chr2:44055034-44055303(-)$1	269	173	177	11.9999
ffff	chr16:66783065-66783317(-)$1	252	144	148	11.9999
eeee	chr15:28375266-28375549(-)$1	283	33	37	11.9999
dd!!	chr11:62289397-62289628(-)$1	231	15	19	11.9999
((((	chrM:14184-14391(-)$1	207	16	20	11.9999
mma3	chr6:158487517-158487763(+)$1	246	55	59	11.9999
[eee	chr16:70292955-70293183(-)$1	228	37	41	11.9999
hhhh	chr12:120568891-120569126(-)$1	235	103	107	11.9999
ee!!	chr14:31618187-31618425(-)$1	238	147	151	11.9999
dd22	chr1:234565868-234566117(-)$1	249	68	72	11.9999
GGGG	chr10:93713504-93713728(+)$1	224	30	34	11.9999
::::	chr1:35652704-35652936(-)$1	232	65	69	11.9999
eeee	chr2:55570683-55570960(-)$1	277	30	34	11.9999
:EEE	chrM:14239-14451(-)$1	212	3	7	11.9999
dddd	chr6:144783812-144784045(+)$1	233	105	109	11.9999
::::	chr14:102496493-102496719(+)$1	226	24	28	11.9999
qqqq	chr5:75967525-75967797(+)$1	272	78	82	11.9999
gggg	chr1:19484299-19484560(-)$1	261	88	92	11.9999
:::d	chr3:99568471-99568726(-)$1	255	83	87	11.9999
fff2	chr18:55278768-55279021(-)$1	253	80	84	11.9999
hhhh	chr1:19474991-19475210(-)$1	219	197	201	11.9999
ffff	chr2:61411764-61412033(+)$1	269	37	41	11.9999
oddd	chrX:70784478-70784699(+)$1	221	207	211	11.9999
eeeo	chr1:39824376-39824646(+)$1	270	3	7	11.9999
JJJJ	chr12:26777132-26777377(-)$1	245	52	56	11.9999
eeee	chr15:28510663-28510905(-)$1	242	37	41	11.9999
ffff	chr2:63086281-63086524(+)$1	243	208	212	11.9999
::ee	chr5:14291004-14291264(+)$1	260	10	14	11.9999
DDKK	chr6:144803336-144803553(+)$1	217	33	37	11.9999

#DB
(((.	chr3:184102705-184102959(+)$1	1	119	123	11.9999
....	chrM:14158-14379(-)$1	1	4	8	11.9999
..((	chr4:79203876-79204116(+)$1	1	95	99	11.9999
((((	chr11:47772703-47772940(-)$1	1	122	126	11.9999
....	chr2:32727819-32728050(+)$1	1	1	5	11.9999
))).	chr7:127670441-127670752(+)$1	1	199	203	11.9999
.((.	chr11:62297246-62297511(-)$1	1	20	24	11.9999
((((	chr6:7581126-7581364(+)$1	1	20	24	11.9999
...(	chr2:97482045-97482326(+)$1	1	84	88	11.9999
(((.	chr7:77166718-77166977(+)$1	1	3	7	11.9999
(((.	chr1:234565831-234566068(-)$1	1	19	23	11.9999
...(	chr1:19436787-19437001(-)$1	1	92	96	11.9999
((..	chr10:121341870-121342115(-)$1	1	155	159	11.9999
((((	chr2:232325100-232325324(-)$1	1	82	86	11.9999
....	chrX:53585611-53585837(-)$1	1	112	116	11.9999
....	chr14:21549699-21549937(+)$1	1	6	10	11.9999
.)))	chr17:35634764-35634998(-)$1	1	140	144	11.9999
(...	chr12:133373042-133373316(-)$1	1	46	50	11.9999
....	chr6:4031987-4032273(+)$1	1	141	145	11.9999
(((.	chrX:70783204-70783450(+)$1	1	84	88	11.9999
....	chr6:111136175-111136406(-)$1	1	3	7	11.9999
.(((	chr9:711127-711390(+)$1	1	138	142	11.9999
...(	chr2:232325124-232325376(-)$1	1	40	44	11.9999
((((	chr1:160209636-160209976(-)$1	1	11	15	11.9999
.)))	chr5:94813926-94814181(-)$1	1	61	65	11.9999
))))	chr1:19423607-19423841(-)$1	1	79	83	11.9999
....	chr14:39649931-39650202(+)$1	1	0	4	11.9999
.(..	chr20:43029847-43030126(+)$1	1	43	47	11.9999
.)))	chr1:245021930-245022165(-)$1	1	56	60	11.9999
))))	chr2:61528130-61528392(-)$1	1	124	128	11.9999
.)).	chr12:104333190-104333423(+)$1	1	41	45	11.9999
).))	chr22:36684243-36684488(-)$1	1	54	58	11.9999
.)))	chr5:43292487-43292695(-)$1	1	83	87	11.9999
....	chr17:79860510-79860762(-)$1	1	172	176	11.9999
((.(	chr9:116999160-116999413(+)$1	1	26	30	11.9999
....	chr2:54197726-54198021(-)$1	1	23	27	11.9999
..).	chr7:5410406-5410641(-)$1	1	189	193	11.9999
.)))	chr12:6710452-6710690(-)$1	1	224	228	11.9999
))))	chr4:79176295-79176622(+)$1	1	130	134	11.9999
((((	chr12:53849568-53849780(+)$1	1	1	5	11.9999
....	chr17:46048405-46048652(+)$1	1	1	5	11.9999
.)))	chr19:6740919-6741154(+)$1	1	99	103	11.9999
))))	chr6:90458841-90459107(-)$1	1	37	41	11.9999
((((	chr15:28514379-28514625(-)$1	1	15	19	11.9999
....	chr3:38207235-38207502(+)$1	1	76	80	11.9999
.)))	chr6:56380149-56380464(-)$1	1	203	207	11.9999
.)))	chr8:100147142-100147464(+)$1	1	35	39	11.9999
))..	chrM:14392-14601(-)$1	1	153	157	11.9999
(.((	chrM:14214-14418(-)$1	1	43	47	11.9999
....	chr10:21875122-21875377(+)$1	1	122	126	11.9999
((((	chrM:14254-14466(-)$1	1	18	22	11.9999
.(((	chr6:144768770-144769017(+)$1	1	28	32	11.9999
.(((	chr3:184102284-184102582(+)$1	1	122	126	11.9999
.(((	chr9:117050635-117050857(+)$1	1	57	61	11.9999
((..	chr12:26875231-26875449(-)$1	1	56	60	11.9999
))))	chr9:131356392-131356708(+)$1	1	174	178	11.9999
....	chr1:35652736-35652953(-)$1	1	82	86	11.9999
))))	chrX:70787742-70788012(+)$1	1	98	102	11.9999
.)))	chr2:44055034-44055303(-)$1	1	173	177	11.9999
))))	chr16:66783065-66783317(-)$1	1	144	148	11.9999
))))	chr15:28375266-28375549(-)$1	1	33	37	11.9999
((..	chr11:62289397-62289628(-)$1	1	15	19	11.9999
....	chrM:14184-14391(-)$1	1	16	20	11.9999
..).	chr6:158487517-158487763(+)$1	1	55	59	11.9999
.(((	chr16:70292955-70293183(-)$1	1	37	41	11.9999
((((	chr12:120568891-120569126(-)$1	1	103	107	11.9999
((..	chr14:31618187-31618425(-)$1	1	147	151	11.9999
))..	chr1:234565868-234566117(-)$1	1	68	72	11.9999
((((	chr10:93713504-93713728(+)$1	1	30	34	11.9999
....	chr1:35652704-35652936(-)$1	1	65	69	11.9999
))))	chr2:55570683-55570960(-)$1	1	30	34	11.9999
.(((	chrM:14239-14451(-)$1	1	3	7	11.9999
))))	chr6:144783812-144784045(+)$1	1	105	109	11.9999
....	chr14:102496493-102496719(+)$1	1	24	28	11.9999
....	chr5:75967525-75967797(+)$1	1	78	82	11.9999
))))	chr1:19484299-19484560(-)$1	1	88	92	11.9999
...(	chr3:99568471-99568726(-)$1	1	83	87	11.9999
))).	chr18:55278768-55279021(-)$1	1	80	84	11.9999
))))	chr1:19474991-19475210(-)$1	1	197	201	11.9999
))))	chr2:61411764-61412033(+)$1	1	37	41	11.9999
.)))	chrX:70784478-70784699(+)$1	1	207	211	11.9999
(((.	chr1:39824376-39824646(+)$1	1	3	7	11.9999
((((	chr12:26777132-26777377(-)$1	1	52	56	11.9999
))))	chr15:28510663-28510905(-)$1	1	37	41	11.9999
((((	chr2:63086281-63086524(+)$1	1	208	212	11.9999
..((	chr5:14291004-14291264(+)$1	1	10	14	11.9999
((..	chr6:144803336-144803553(+)$1	1	33	37	11.9999

#PSSM
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	

#score	1043.9999999999998
#seq	87
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF121XLA_HNRNPA1_UTR_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
FFFF:ggggggg$$$$$eeeee####ddddllldddd4444eeeee666666ggggggg:::dddd!!eeeee[bblllbb]eeeee]dddd:::::::::::ccc[ffffff!!ddddbbmmmmbb]dddd4444ffffff]ccc:cccooooooccc:eeeeemmmmeeeee:::ffffff"""ddddttttttttt	chr7:26230121-26230402(-)$1	281	24	223	597.0000

#DB
((((.(((((((.....(((((....((((...))))....)))))......)))))))...((((..(((((.((...)).))))).))))...........(((.((((((..((((((....)).))))....)))))).))).(((......))).(((((....)))))...((((((...((((.........	chr7:26230121-26230402(-)$1	1	24	223	597.0000

#PSSM
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	

#score	597.0
#seq	1
#width	199
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_CDS_m3_run1.nuc.txt

#NT
UUUUAAA	chr17:38555238-38555461(-)$1	223	66	73	13.8205
uuugaga	chr14:102549270-102549477(-)$1	207	53	60	13.4358
UAUGAAA	chr15:44085158-44085450(+)$1	292	48	55	13.4358
UCUGAAA	chr3:37367401-37367694(+)$1	293	20	27	13.5641
UGUGAAA	chr12:104341332-104341586(+)$1	254	147	154	13.5641
UUUGAAA	chr3:37365636-37365865(+)$1	229	53	60	17.6666
AUUGAAA	chr14:102548647-102548882(-)$1	235	11	18	13.6923
UUUGAAU	chr16:2814229-2814474(+)$1	245	101	108	13.4358
AUUGAAA	chr2:187368764-187369056(+)$1	292	18	25	13.6923
UUUGAAA	chr5:98236409-98236655(-)$1	246	92	99	17.6666
GUUGAAA	chr2:152322048-152322310(+)$1	262	196	203	13.5641
UUUGAAA	chr9:37126768-37127058(+)$1	290	191	198	17.6666
UUUGAAC	chr1:16257305-16257553(+)$1	248	35	42	13.5641
UUUGAUA	chr19:8532318-8532535(+)$1	217	123	130	13.3076
UUUUAAA	chr5:138700234-138700485(+)$1	251	219	226	13.8205
UUUGAAA	chr12:104333186-104333467(+)$1	281	14	21	17.6666
AUUGAAA	chr18:9255445-9255700(+)$1	255	241	248	13.6923
UUGGAAA	chr12:104336752-104336967(+)$1	215	67	74	12.9230
UCUGAAA	chr6:26056338-26056573(-)$1	235	99	106	13.5641
GUUGAAA	chr12:104333267-104333486(+)$1	219	19	26	13.5641
UUUGGAA	chr12:95888712-95889004(+)$1	292	183	190	12.9230
UUUGAAA	chr10:70546202-70546434(+)$1	232	56	63	17.6666
UUUGAAA	chr7:91632338-91632634(+)$1	296	58	65	17.6666
UUUUAAA	chrX:71495293-71495509(-)$1	216	124	131	13.8205
UUUGAAA	chr12:76448699-76448970(-)$1	271	182	189	17.6666
UUUAAAA	chr12:21788376-21788670(-)$1	294	219	226	13.4358
UUUGAAA	chr8:101725281-101725510(-)$1	229	4	11	17.6666
UUUGAAG	chr12:76449711-76449917(-)$1	206	135	142	13.5641
UUUGAAG	chr17:38562824-38563039(-)$1	215	143	150	13.5641
UUUGAGA	chr8:124348512-124348762(-)$1	250	85	92	13.4358
UUUGACA	chr11:5290778-5291008(-)$1	230	136	143	13.3076
UGUGAAA	chr17:38556415-38556673(-)$1	258	107	114	13.5641
UUUGAAA	chr11:62297321-62297602(-)$1	281	90	97	17.6666
UUUGAAC	chr3:47727478-47727762(-)$1	284	76	83	13.5641
UUUGAAA	chr13:45911523-45911779(-)$1	256	221	228	17.6666
UUUGAAA	chr4:104081681-104081928(-)$1	247	178	185	17.6666
UUUGAAA	chr12:104335153-104335396(+)$1	243	206	213	17.6666
UUUGAAA	chr17:79801302-79801592(-)$1	290	47	54	17.6666

#otherMatches

#Struct PSSM
^^^^^^^	chr1:8934783-8935001(-)$1	218	166	173	13.8205
gggggmm	chr17:38555238-38555461(-)$1	223	66	73	13.8205
EE{FFFF	chr14:102549270-102549477(-)$1	207	53	60	13.4358
555eeee	chr15:44085158-44085450(+)$1	292	48	55	13.4358
IIII:::	chr3:37367401-37367694(+)$1	293	20	27	13.5641
eeeee22	chr12:104341332-104341586(+)$1	254	147	154	13.5641
{CCC:::	chr3:37365636-37365865(+)$1	229	53	60	17.6666
IIIIMMM	chr14:102548647-102548882(-)$1	235	11	18	13.6923
ggg333f	chr16:2814229-2814474(+)$1	245	101	108	13.4358
FFFFMMM	chr2:187368764-187369056(+)$1	292	18	25	13.6923
ggggg!!	chr5:98236409-98236655(-)$1	246	92	99	17.6666
eee::ee	chr2:152322048-152322310(+)$1	262	196	203	13.5641
b]ccc]b	chr9:37126768-37127058(+)$1	290	191	198	17.6666
ddddsss	chr1:16257305-16257553(+)$1	248	35	42	13.5641
JJ:::::	chr19:8532318-8532535(+)$1	217	123	130	13.3076
:::::::	chr5:138700234-138700485(+)$1	251	219	226	13.8205
iii!!a"	chr12:104333186-104333467(+)$1	281	14	21	17.6666
EEBB:::	chr18:9255445-9255700(+)$1	255	241	248	13.6923
eeee555	chr12:104336752-104336967(+)$1	215	67	74	12.9230
fff>>>>	chr6:26056338-26056573(-)$1	235	99	106	13.5641
C{CCCOO	chr12:104333267-104333486(+)$1	219	19	26	13.5641
dddd"""	chr12:95888712-95889004(+)$1	292	183	190	12.9230
e^^^^^^	chr10:70546202-70546434(+)$1	232	56	63	17.6666
DDDRRRR	chr7:91632338-91632634(+)$1	296	58	65	17.6666
uuuuuuu	chrX:71495293-71495509(-)$1	216	124	131	13.8205
ddd####	chr12:76448699-76448970(-)$1	271	182	189	17.6666
#dddd!!	chr12:21788376-21788670(-)$1	294	219	226	13.4358
e[eeeee	chr8:101725281-101725510(-)$1	229	4	11	17.6666
=======	chr12:76449711-76449917(-)$1	206	135	142	13.5641
dddd!!h	chr17:38562824-38563039(-)$1	215	143	150	13.5641
ffff:bb	chr8:124348512-124348762(-)$1	250	85	92	13.4358
uuuuuuu	chr11:5290778-5291008(-)$1	230	136	143	13.3076
eeee333	chr17:38556415-38556673(-)$1	258	107	114	13.5641
gggg:::	chr11:62297321-62297602(-)$1	281	90	97	17.6666
'''bb[=	chr3:47727478-47727762(-)$1	284	76	83	13.5641
hhhlllh	chr13:45911523-45911779(-)$1	256	221	228	17.6666
emmmmee	chr4:104081681-104081928(-)$1	247	178	185	17.6666
gggdddd	chr12:104335153-104335396(+)$1	243	206	213	17.6666
=======	chr17:79801302-79801592(-)$1	290	47	54	17.6666

#DB
.......	chr1:8934783-8935001(-)$1	1	166	173	13.8205
(((((..	chr17:38555238-38555461(-)$1	1	66	73	13.8205
((.((((	chr14:102549270-102549477(-)$1	1	53	60	13.4358
...))))	chr15:44085158-44085450(+)$1	1	48	55	13.4358
((((...	chr3:37367401-37367694(+)$1	1	20	27	13.5641
)))))..	chr12:104341332-104341586(+)$1	1	147	154	13.5641
.(((...	chr3:37365636-37365865(+)$1	1	53	60	17.6666
((((...	chr14:102548647-102548882(-)$1	1	11	18	13.6923
)))...)	chr16:2814229-2814474(+)$1	1	101	108	13.4358
((((...	chr2:187368764-187369056(+)$1	1	18	25	13.6923
(((((..	chr5:98236409-98236655(-)$1	1	92	99	17.6666
)))..((	chr2:152322048-152322310(+)$1	1	196	203	13.5641
).))).)	chr9:37126768-37127058(+)$1	1	191	198	17.6666
((((...	chr1:16257305-16257553(+)$1	1	35	42	13.5641
)).....	chr19:8532318-8532535(+)$1	1	123	130	13.3076
.......	chr5:138700234-138700485(+)$1	1	219	226	13.8205
(((..(.	chr12:104333186-104333467(+)$1	1	14	21	17.6666
))))...	chr18:9255445-9255700(+)$1	1	241	248	13.6923
))))...	chr12:104336752-104336967(+)$1	1	67	74	12.9230
)))....	chr6:26056338-26056573(-)$1	1	99	106	13.5641
(.(((..	chr12:104333267-104333486(+)$1	1	19	26	13.5641
((((...	chr12:95888712-95889004(+)$1	1	183	190	12.9230
(......	chr10:70546202-70546434(+)$1	1	56	63	17.6666
(((....	chr7:91632338-91632634(+)$1	1	58	65	17.6666
.......	chrX:71495293-71495509(-)$1	1	124	131	13.8205
(((....	chr12:76448699-76448970(-)$1	1	182	189	17.6666
.((((..	chr12:21788376-21788670(-)$1	1	219	226	13.4358
(.(((((	chr8:101725281-101725510(-)$1	1	4	11	17.6666
(((((((	chr12:76449711-76449917(-)$1	1	135	142	13.5641
((((..(	chr17:38562824-38563039(-)$1	1	143	150	13.5641
)))).((	chr8:124348512-124348762(-)$1	1	85	92	13.4358
.......	chr11:5290778-5291008(-)$1	1	136	143	13.3076
))))...	chr17:38556415-38556673(-)$1	1	107	114	13.5641
))))...	chr11:62297321-62297602(-)$1	1	90	97	17.6666
...((.(	chr3:47727478-47727762(-)$1	1	76	83	13.5641
(((...)	chr13:45911523-45911779(-)$1	1	221	228	17.6666
(....))	chr4:104081681-104081928(-)$1	1	178	185	17.6666
)))((((	chr12:104335153-104335396(+)$1	1	206	213	17.6666
(((((((	chr17:79801302-79801592(-)$1	1	47	54	17.6666

#PSSM
U : 0.84	A : 0.07	G : 0.05	u : 0.02	
U : 0.84	C : 0.05	G : 0.05	u : 0.02	A : 0.02	
U : 0.94	u : 0.02	G : 0.02	
G : 0.84	U : 0.10	g : 0.02	A : 0.02	
A : 0.94	a : 0.02	G : 0.02	
A : 0.89	g : 0.02	U : 0.02	G : 0.02	C : 0.02	
A : 0.84	C : 0.05	G : 0.05	a : 0.02	U : 0.02	

#score	581.3076923076927
#seq	39
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_CDS_m1_run2.nuc.txt

#NT
UGGCU	chr11:5289627-5289839(-)$1	212	40	45	15.0000
UGGCU	chr12:53693007-53693327(+)$1	320	163	168	15.0000
UGGCU	chr17:79857864-79858138(+)$1	274	8	13	15.0000
UGGCU	chr12:56119179-56119458(-)$1	279	95	100	15.0000
UGGCU	chr11:118279650-118279935(+)$1	285	147	152	15.0000
UGGCU	chr15:44085875-44086131(+)$1	256	101	106	15.0000
UGGCU	chr6:31698634-31698853(-)$1	219	23	28	15.0000
UGGCU	chr1:165624532-165624788(+)$1	256	0	5	15.0000
UGGCU	chr12:57031939-57032210(-)$1	271	81	86	15.0000
UGGCU	chr12:56119495-56119741(-)$1	246	85	90	15.0000
UGGCU	chr3:197677737-197677950(+)$1	213	31	36	15.0000
UGGCU	chr19:36145438-36145672(+)$1	234	198	203	15.0000
UGGCU	chr11:5289642-5289871(-)$1	229	72	77	15.0000
UGGCU	chr1:165624588-165624835(+)$1	247	119	124	15.0000
UGGCU	chr19:40330970-40331256(-)$1	286	7	12	15.0000
UGGCU	chr7:99690351-99690706(-)$1	355	52	57	15.0000
UGGCU	chr11:75111676-75111904(+)$1	228	116	121	15.0000
UGGCU	chr11:75111704-75111944(+)$1	240	88	93	15.0000
UGGCU	chr5:81574037-81574261(-)$1	224	34	39	15.0000
UGGCU	chr14:50052640-50052868(-)$1	228	7	12	15.0000
UGGCU	chr11:62284580-62284833(-)$1	253	131	136	15.0000
UGGCU	chr3:37366554-37366861(+)$1	307	108	113	15.0000
UGGCU	chr8:11696008-11696249(+)$1	241	33	38	15.0000
UGGCU	chr15:72491922-72492163(-)$1	241	24	29	15.0000
UGGCU	chr2:176043684-176043921(-)$1	237	76	81	15.0000
UGGCU	chr7:54823371-54823611(-)$1	240	92	97	15.0000
UGGCU	chr1:8921264-8921549(-)$1	285	163	168	15.0000
UGGCU	chrX:55035398-55035727(-)$1	329	5	10	15.0000
UGGCU	chr11:67353784-67354049(+)$1	265	44	49	15.0000
UGGCU	chr3:101405414-101405657(-)$1	243	211	216	15.0000
UGGCU	chr11:8707229-8707476(+)$1	247	116	121	15.0000
UGGCU	chr11:5290583-5290801(-)$1	218	148	153	15.0000
UGGCU	chr2:98264436-98264681(+)$1	245	54	59	15.0000
uggcu	chr17:34171448-34171719(+)$1	271	129	134	15.0000
UGGCU	chr1:8923234-8923464(-)$1	230	52	57	15.0000
UGGCU	chr1:8923192-8923434(-)$1	242	22	27	15.0000
UGGCU	chr10:71151859-71152122(+)$1	263	256	261	15.0000
UGGCU	chr19:36149395-36149616(+)$1	221	156	161	15.0000
UGGCU	chr10:79793533-79793763(+)$1	230	100	105	15.0000
UGGCU	chr11:5289707-5289926(-)$1	219	127	132	15.0000

#otherMatches

#Struct PSSM
a]ddd	chr11:5289611-5289827(-)$1	216	28	33	15.0000
a]ddd	chr11:5289627-5289839(-)$1	212	40	45	15.0000
D::gg	chr12:53693007-53693327(+)$1	320	163	168	15.0000
C:ggg	chr17:79857864-79858138(+)$1	274	8	13	15.0000
}EEEE	chr12:56119179-56119458(-)$1	279	95	100	15.0000
nnnnn	chr11:118279650-118279935(+)$1	285	147	152	15.0000
[cccn	chr15:44085875-44086131(+)$1	256	101	106	15.0000
ddddf	chr6:31698634-31698853(-)$1	219	23	28	15.0000
::ddd	chr1:165624532-165624788(+)$1	256	0	5	15.0000
d]ccc	chr12:57031939-57032210(-)$1	271	81	86	15.0000
hh[cc	chr12:56119495-56119741(-)$1	246	85	90	15.0000
a22dd	chr3:197677737-197677950(+)$1	213	31	36	15.0000
BYYCC	chr19:36145438-36145672(+)$1	234	198	203	15.0000
a]ddd	chr11:5289642-5289871(-)$1	229	72	77	15.0000
fff::	chr1:165624588-165624835(+)$1	247	119	124	15.0000
:dddd	chr19:40330970-40331256(-)$1	286	7	12	15.0000
gg[ad	chr7:99690351-99690706(-)$1	355	52	57	15.0000
ggggg	chr11:75111676-75111904(+)$1	228	116	121	15.0000
ggggg	chr11:75111704-75111944(+)$1	240	88	93	15.0000
"eeee	chr5:81574037-81574261(-)$1	224	34	39	15.0000
eeeee	chr14:50052640-50052868(-)$1	228	7	12	15.0000
dddmm	chr11:62284580-62284833(-)$1	253	131	136	15.0000
EEEEE	chr3:37366554-37366861(+)$1	307	108	113	15.0000
FFfff	chr8:11696008-11696249(+)$1	241	33	38	15.0000
CCCLL	chr15:72491922-72492163(-)$1	241	24	29	15.0000
:eeee	chr2:176043684-176043921(-)$1	237	76	81	15.0000
ccc!!	chr7:54823371-54823611(-)$1	240	92	97	15.0000
!dddd	chr1:8921264-8921549(-)$1	285	163	168	15.0000
GGG{E	chrX:55035398-55035727(-)$1	329	5	10	15.0000
]dddd	chr11:67353784-67354049(+)$1	265	44	49	15.0000
FFFF~	chr3:101405414-101405657(-)$1	243	211	216	15.0000
""eee	chr11:8707229-8707476(+)$1	247	116	121	15.0000
#gggg	chr11:5290583-5290801(-)$1	218	148	153	15.0000
gg[bb	chr2:98264436-98264681(+)$1	245	54	59	15.0000
a]hhh	chr17:34171448-34171719(+)$1	271	129	134	15.0000
iiiii	chr1:8923234-8923464(-)$1	230	52	57	15.0000
[bbll	chr1:8923192-8923434(-)$1	242	22	27	15.0000
nneee	chr10:71151859-71152122(+)$1	263	256	261	15.0000
CCCBB	chr19:36149395-36149616(+)$1	221	156	161	15.0000
:ccc[	chr10:79793533-79793763(+)$1	230	100	105	15.0000
:ccc!	chr11:5289707-5289926(-)$1	219	127	132	15.0000

#DB
).)))	chr11:5289611-5289827(-)$1	1	28	33	15.0000
).)))	chr11:5289627-5289839(-)$1	1	40	45	15.0000
(..((	chr12:53693007-53693327(+)$1	1	163	168	15.0000
(.(((	chr17:79857864-79858138(+)$1	1	8	13	15.0000
.))))	chr12:56119179-56119458(-)$1	1	95	100	15.0000
.....	chr11:118279650-118279935(+)$1	1	147	152	15.0000
.(((.	chr15:44085875-44086131(+)$1	1	101	106	15.0000
)))))	chr6:31698634-31698853(-)$1	1	23	28	15.0000
..(((	chr1:165624532-165624788(+)$1	1	0	5	15.0000
).)))	chr12:57031939-57032210(-)$1	1	81	86	15.0000
((.((	chr12:56119495-56119741(-)$1	1	85	90	15.0000
)..))	chr3:197677737-197677950(+)$1	1	31	36	15.0000
)..))	chr19:36145438-36145672(+)$1	1	198	203	15.0000
).)))	chr11:5289642-5289871(-)$1	1	72	77	15.0000
)))..	chr1:165624588-165624835(+)$1	1	119	124	15.0000
.((((	chr19:40330970-40331256(-)$1	1	7	12	15.0000
((.((	chr7:99690351-99690706(-)$1	1	52	57	15.0000
(((((	chr11:75111676-75111904(+)$1	1	116	121	15.0000
(((((	chr11:75111704-75111944(+)$1	1	88	93	15.0000
.((((	chr5:81574037-81574261(-)$1	1	34	39	15.0000
(((((	chr14:50052640-50052868(-)$1	1	7	12	15.0000
(((..	chr11:62284580-62284833(-)$1	1	131	136	15.0000
(((((	chr3:37366554-37366861(+)$1	1	108	113	15.0000
(((((	chr8:11696008-11696249(+)$1	1	33	38	15.0000
(((..	chr15:72491922-72492163(-)$1	1	24	29	15.0000
.((((	chr2:176043684-176043921(-)$1	1	76	81	15.0000
(((..	chr7:54823371-54823611(-)$1	1	92	97	15.0000
.((((	chr1:8921264-8921549(-)$1	1	163	168	15.0000
(((.(	chrX:55035398-55035727(-)$1	1	5	10	15.0000
.))))	chr11:67353784-67354049(+)$1	1	44	49	15.0000
)))).	chr3:101405414-101405657(-)$1	1	211	216	15.0000
..(((	chr11:8707229-8707476(+)$1	1	116	121	15.0000
.((((	chr11:5290583-5290801(-)$1	1	148	153	15.0000
((.((	chr2:98264436-98264681(+)$1	1	54	59	15.0000
).)))	chr17:34171448-34171719(+)$1	1	129	134	15.0000
)))))	chr1:8923234-8923464(-)$1	1	52	57	15.0000
.((..	chr1:8923192-8923434(-)$1	1	22	27	15.0000
..)))	chr10:71151859-71152122(+)$1	1	256	261	15.0000
)))))	chr19:36149395-36149616(+)$1	1	156	161	15.0000
.(((.	chr10:79793533-79793763(+)$1	1	100	105	15.0000
.(((.	chr11:5289707-5289926(-)$1	1	127	132	15.0000

#PSSM
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	

#score	615.0000000000001
#seq	41
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_CDS_m1_run1.nuc.txt

#NT
UGG	chr1:1560283-1560561(+)$1	278	3	6	9.0000
UGG	chr11:17098874-17099093(-)$1	219	15	18	9.0000
ugg	chr19:54967043-54967274(+)$1	231	38	41	9.0000
UGG	chr11:62291035-62291272(-)$1	237	65	68	9.0000
UGG	chr18:33719335-33719576(+)$1	241	51	54	9.0000
UGG	chr1:28531740-28531961(-)$1	221	18	21	9.0000
UGG	chr12:49666689-49666938(+)$1	249	1	4	9.0000
UGG	chr11:61089035-61089270(-)$1	235	7	10	9.0000
UGG	chr20:62626226-62626447(+)$1	221	22	25	9.0000
ugg	chr2:54197781-54198043(-)$1	262	68	71	9.0000
UGG	chr1:16258940-16259155(+)$1	215	54	57	9.0000
UGG	chr11:62400420-62400652(-)$1	232	16	19	9.0000
UGG	chr11:108593940-108594258(+)$1	318	14	17	9.0000
UGG	chr17:8421848-8422072(-)$1	224	1	4	9.0000
Ugg	chr11:118344461-118344743(+)$1	282	15	18	9.0000
UGG	chr12:56498355-56498640(+)$1	285	97	100	9.0000
UGG	chr12:6879450-6879672(+)$1	222	1	4	9.0000
UGG	chr13:98671866-98672136(+)$1	270	117	120	9.0000
UGG	chr8:145107123-145107378(-)$1	255	5	8	9.0000
UGG	chr11:62299314-62299624(-)$1	310	41	44	9.0000
UGG	chr11:763796-764061(+)$1	265	13	16	9.0000
UGG	chr19:58905764-58906012(+)$1	248	1	4	9.0000
UGG	chr14:105865723-105865978(+)$1	255	30	33	9.0000
UGG	chr1:183596534-183596802(-)$1	268	59	62	9.0000
UGG	chr8:144999527-144999784(-)$1	257	54	57	9.0000
UGG	chr11:61557156-61557406(-)$1	250	75	78	9.0000
ugg	chr11:57100459-57100702(-)$1	243	11	14	9.0000
UGG	chr19:3979779-3979997(-)$1	218	4	7	9.0000
UGG	chr1:228336383-228336642(+)$1	259	83	86	9.0000
UGG	chr15:91422982-91423202(+)$1	220	5	8	9.0000
UGG	chr19:6739618-6739892(+)$1	274	17	20	9.0000
UGG	chr11:62285353-62285626(-)$1	273	27	30	9.0000
UGG	chr12:122620101-122620423(+)$1	322	49	52	9.0000
UGG	chr4:13601208-13601464(-)$1	256	101	104	9.0000
UGG	chr1:27106041-27106263(+)$1	222	47	50	9.0000
UGG	chr11:75115067-75115283(+)$1	216	5	8	9.0000
UGG	chr9:139904710-139904981(-)$1	271	16	19	9.0000
UGG	chr11:62285221-62285458(-)$1	237	18	21	9.0000
UGG	chr16:30723217-30723471(+)$1	254	92	95	9.0000
UGG	chr5:140699405-140699653(-)$1	248	14	17	9.0000
UGG	chrX:47001712-47001940(-)$1	228	23	26	9.0000
UGG	chr2:178082455-178082673(+)$1	218	23	26	9.0000
UGG	chrX:47001911-47002145(-)$1	234	16	19	9.0000
UGG	chr12:112685721-112686050(-)$1	329	88	91	9.0000
UGG	chr17:62499833-62500090(-)$1	257	41	44	9.0000
UGG	chr4:2895679-2895920(+)$1	241	24	27	9.0000
UGG	chr1:145508089-145508365(+)$1	276	2	5	9.0000
UGG	chr4:104081680-104081912(-)$1	232	204	207	9.0000
UGG	chr16:24802379-24802634(+)$1	255	21	24	9.0000
UGG	chr11:62334186-62334393(-)$1	207	46	49	9.0000
UGG	chr12:49447205-49447456(-)$1	251	11	14	9.0000
UGG	chr21:35469534-35469786(+)$1	252	62	65	9.0000
UGG	chr13:113209127-113209425(-)$1	298	10	13	9.0000
UGG	chr1:28559358-28559606(-)$1	248	78	81	9.0000
UGG	chr3:23959237-23959462(+)$1	225	23	26	9.0000
UGG	chr17:57774859-57775239(-)$1	380	10	13	9.0000
UGG	chr19:39926216-39926440(-)$1	224	3	6	9.0000
UGG	chr19:39926240-39926448(-)$1	208	11	14	9.0000
UGG	chr2:178129080-178129369(-)$1	289	69	72	9.0000
UGG	chrX:47062956-47063197(+)$1	241	0	3	9.0000
UGG	chr8:22267339-22267630(+)$1	291	4	7	9.0000
UGG	chr15:45879553-45879806(+)$1	253	13	16	9.0000
UGG	chr6:56966557-56966808(+)$1	251	2	5	9.0000
UGG	chr4:104062952-104063166(-)$1	214	93	96	9.0000
UGG	chr12:6879226-6879485(+)$1	259	2	5	9.0000
UGG	chr19:10401721-10401967(+)$1	246	19	22	9.0000
UGG	chr9:134103486-134103740(+)$1	254	61	64	9.0000
UGG	chr3:49050517-49050787(+)$1	270	33	36	9.0000
UGG	chr12:49666495-49666738(+)$1	243	69	72	9.0000
UGG	chr19:572520-572802(+)$1	282	81	84	9.0000
UGG	chr11:62284190-62284535(-)$1	345	16	19	9.0000
UGG	chr5:176737580-176737855(-)$1	275	12	15	9.0000
UGG	chr11:62284725-62285028(-)$1	303	10	13	9.0000
UGG	chr1:155030375-155030652(+)$1	277	58	61	9.0000
UGG	chr11:62300890-62301145(-)$1	255	3	6	9.0000
UGG	chr2:153520551-153520772(-)$1	221	32	35	9.0000
UGG	chr19:18548503-18548714(-)$1	211	32	35	9.0000
UGG	chr22:38893990-38894223(-)$1	233	111	114	9.0000
UGG	chr11:62284590-62284832(-)$1	242	22	25	9.0000
UGG	chr5:134116720-134116959(+)$1	239	107	110	9.0000
UGG	chr20:307081-307317(-)$1	236	138	141	9.0000
UGG	chr22:21174739-21174981(-)$1	242	119	122	9.0000
UGG	chr16:1821053-1821341(-)$1	288	38	41	9.0000
UGG	chr14:75265156-75265420(+)$1	264	28	31	9.0000
UGG	chr3:13461403-13461664(-)$1	261	77	80	9.0000
UGG	chr19:18700036-18700326(+)$1	290	56	59	9.0000
UGG	chr19:1014093-1014326(-)$1	233	47	50	9.0000
UGG	chr16:23690168-23690412(+)$1	244	113	116	9.0000
UGG	chr4:13603898-13604173(-)$1	275	107	110	9.0000
UGG	chr16:725956-726265(+)$1	309	2	5	9.0000
UGG	chr17:49197724-49197972(-)$1	248	34	37	9.0000
UGG	chr16:28167628-28167880(-)$1	252	1	4	9.0000
UGG	chr2:48025680-48025944(+)$1	264	18	21	9.0000
UGG	chr1:214819016-214819246(+)$1	230	15	18	9.0000
UGG	chr1:243388377-243388670(-)$1	293	103	106	9.0000
UGG	chr17:35306289-35306565(+)$1	276	0	3	9.0000
UGG	chr1:16054066-16054315(+)$1	249	0	3	9.0000
UGG	chr1:12337783-12338029(+)$1	246	54	57	9.0000
UGG	chr19:19021694-19021908(-)$1	214	41	44	9.0000

#otherMatches

#Struct PSSM
EMM	chr21:45223344-45223628(+)$1	284	9	12	9.0000
:ff	chr1:1560283-1560561(+)$1	278	3	6	9.0000
eA{	chr11:17098874-17099093(-)$1	219	15	18	9.0000
BB{	chr19:54967043-54967274(+)$1	231	38	41	9.0000
[cc	chr11:62291035-62291272(-)$1	237	65	68	9.0000
hhh	chr18:33719335-33719576(+)$1	241	51	54	9.0000
eee	chr1:28531740-28531961(-)$1	221	18	21	9.0000
DDD	chr12:49666689-49666938(+)$1	249	1	4	9.0000
:a!	chr11:61089035-61089270(-)$1	235	7	10	9.0000
SEE	chr20:62626226-62626447(+)$1	221	22	25	9.0000
d::	chr2:54197781-54198043(-)$1	262	68	71	9.0000
rrr	chr1:16258940-16259155(+)$1	215	54	57	9.0000
hhh	chr11:62400420-62400652(-)$1	232	16	19	9.0000
cct	chr11:108593940-108594258(+)$1	318	14	17	9.0000
:::	chr17:8421848-8422072(-)$1	224	1	4	9.0000
A{D	chr11:118344461-118344743(+)$1	282	15	18	9.0000
lee	chr12:56498355-56498640(+)$1	285	97	100	9.0000
ddd	chr12:6879450-6879672(+)$1	222	1	4	9.0000
b""	chr13:98671866-98672136(+)$1	270	117	120	9.0000
JJJ	chr8:145107123-145107378(-)$1	255	5	8	9.0000
ff[	chr11:62299314-62299624(-)$1	310	41	44	9.0000
ddd	chr11:763796-764061(+)$1	265	13	16	9.0000
GGG	chr19:58905764-58906012(+)$1	248	1	4	9.0000
G{E	chr14:105865723-105865978(+)$1	255	30	33	9.0000
FFF	chr1:183596534-183596802(-)$1	268	59	62	9.0000
22d	chr8:144999527-144999784(-)$1	257	54	57	9.0000
FFF	chr11:61557156-61557406(-)$1	250	75	78	9.0000
JJJ	chr11:57100459-57100702(-)$1	243	11	14	9.0000
EEE	chr19:3979779-3979997(-)$1	218	4	7	9.0000
##b	chr1:228336383-228336642(+)$1	259	83	86	9.0000
EMM	chr15:91422982-91423202(+)$1	220	5	8	9.0000
:dd	chr19:6739618-6739892(+)$1	274	17	20	9.0000
gss	chr11:62285353-62285626(-)$1	273	27	30	9.0000
HHH	chr12:122620101-122620423(+)$1	322	49	52	9.0000
"""	chr4:13601208-13601464(-)$1	256	101	104	9.0000
bb2	chr1:27106041-27106263(+)$1	222	47	50	9.0000
hhh	chr11:75115067-75115283(+)$1	216	5	8	9.0000
ff:	chr9:139904710-139904981(-)$1	271	16	19	9.0000
ccc	chr11:62285221-62285458(-)$1	237	18	21	9.0000
FFF	chr16:30723217-30723471(+)$1	254	92	95	9.0000
FFF	chr5:140699405-140699653(-)$1	248	14	17	9.0000
DPP	chrX:47001712-47001940(-)$1	228	23	26	9.0000
HHH	chr2:178082455-178082673(+)$1	218	23	26	9.0000
DDD	chrX:47001911-47002145(-)$1	234	16	19	9.0000
2gg	chr12:112685721-112686050(-)$1	329	88	91	9.0000
hhh	chr17:62499833-62500090(-)$1	257	41	44	9.0000
DDK	chr4:2895679-2895920(+)$1	241	24	27	9.0000
eee	chr1:145508089-145508365(+)$1	276	2	5	9.0000
dd"	chr4:104081680-104081912(-)$1	232	204	207	9.0000
ccc	chr16:24802379-24802634(+)$1	255	21	24	9.0000
^^^	chr11:62334186-62334393(-)$1	207	46	49	9.0000
Icc	chr12:49447205-49447456(-)$1	251	11	14	9.0000
WWH	chr21:35469534-35469786(+)$1	252	62	65	9.0000
##e	chr13:113209127-113209425(-)$1	298	10	13	9.0000
c55	chr1:28559358-28559606(-)$1	248	78	81	9.0000
hhh	chr3:23959237-23959462(+)$1	225	23	26	9.0000
fff	chr17:57774859-57775239(-)$1	380	10	13	9.0000
:::	chr19:39926216-39926440(-)$1	224	3	6	9.0000
cc"	chr19:39926240-39926448(-)$1	208	11	14	9.0000
fff	chr2:178129080-178129369(-)$1	289	69	72	9.0000
ddd	chrX:47062956-47063197(+)$1	241	0	3	9.0000
[bb	chr8:22267339-22267630(+)$1	291	4	7	9.0000
ccc	chr15:45879553-45879806(+)$1	253	13	16	9.0000
fff	chr6:56966557-56966808(+)$1	251	2	5	9.0000
EEE	chr4:104062952-104063166(-)$1	214	93	96	9.0000
ddd	chr12:6879226-6879485(+)$1	259	2	5	9.0000
eee	chr19:10401721-10401967(+)$1	246	19	22	9.0000
[ee	chr9:134103486-134103740(+)$1	254	61	64	9.0000
fff	chr3:49050517-49050787(+)$1	270	33	36	9.0000
fff	chr12:49666495-49666738(+)$1	243	69	72	9.0000
ggg	chr19:572520-572802(+)$1	282	81	84	9.0000
f[c	chr11:62284190-62284535(-)$1	345	16	19	9.0000
MBB	chr5:176737580-176737855(-)$1	275	12	15	9.0000
HHH	chr11:62284725-62285028(-)$1	303	10	13	9.0000
{FF	chr1:155030375-155030652(+)$1	277	58	61	9.0000
C{B	chr11:62300890-62301145(-)$1	255	3	6	9.0000
fff	chr2:153520551-153520772(-)$1	221	32	35	9.0000
ggd	chr19:18548503-18548714(-)$1	211	32	35	9.0000
ddd	chr22:38893990-38894223(-)$1	233	111	114	9.0000
fff	chr11:62284590-62284832(-)$1	242	22	25	9.0000
ccd	chr5:134116720-134116959(+)$1	239	107	110	9.0000
{EE	chr20:307081-307317(-)$1	236	138	141	9.0000
mmi	chr22:21174739-21174981(-)$1	242	119	122	9.0000
ccB	chr16:1821053-1821341(-)$1	288	38	41	9.0000
^^^	chr14:75265156-75265420(+)$1	264	28	31	9.0000
22a	chr3:13461403-13461664(-)$1	261	77	80	9.0000
]bb	chr19:18700036-18700326(+)$1	290	56	59	9.0000
22e	chr19:1014093-1014326(-)$1	233	47	50	9.0000
ccc	chr16:23690168-23690412(+)$1	244	113	116	9.0000
ooo	chr4:13603898-13604173(-)$1	275	107	110	9.0000
:ee	chr16:725956-726265(+)$1	309	2	5	9.0000
f:B	chr17:49197724-49197972(-)$1	248	34	37	9.0000
FFF	chr16:28167628-28167880(-)$1	252	1	4	9.0000
bb!	chr2:48025680-48025944(+)$1	264	18	21	9.0000
foo	chr1:214819016-214819246(+)$1	230	15	18	9.0000
ggf	chr1:243388377-243388670(-)$1	293	103	106	9.0000
::B	chr17:35306289-35306565(+)$1	276	0	3	9.0000
CCC	chr1:16054066-16054315(+)$1	249	0	3	9.0000
cnn	chr1:12337783-12338029(+)$1	246	54	57	9.0000
eee	chr19:19021694-19021908(-)$1	214	41	44	9.0000

#DB
(..	chr21:45223344-45223628(+)$1	1	9	12	9.0000
.((	chr1:1560283-1560561(+)$1	1	3	6	9.0000
)(.	chr11:17098874-17099093(-)$1	1	15	18	9.0000
((.	chr19:54967043-54967274(+)$1	1	38	41	9.0000
.((	chr11:62291035-62291272(-)$1	1	65	68	9.0000
(((	chr18:33719335-33719576(+)$1	1	51	54	9.0000
(((	chr1:28531740-28531961(-)$1	1	18	21	9.0000
(((	chr12:49666689-49666938(+)$1	1	1	4	9.0000
.(.	chr11:61089035-61089270(-)$1	1	7	10	9.0000
.((	chr20:62626226-62626447(+)$1	1	22	25	9.0000
)..	chr2:54197781-54198043(-)$1	1	68	71	9.0000
...	chr1:16258940-16259155(+)$1	1	54	57	9.0000
)))	chr11:62400420-62400652(-)$1	1	16	19	9.0000
((.	chr11:108593940-108594258(+)$1	1	14	17	9.0000
...	chr17:8421848-8422072(-)$1	1	1	4	9.0000
(.(	chr11:118344461-118344743(+)$1	1	15	18	9.0000
.))	chr12:56498355-56498640(+)$1	1	97	100	9.0000
(((	chr12:6879450-6879672(+)$1	1	1	4	9.0000
(..	chr13:98671866-98672136(+)$1	1	117	120	9.0000
(((	chr8:145107123-145107378(-)$1	1	5	8	9.0000
((.	chr11:62299314-62299624(-)$1	1	41	44	9.0000
(((	chr11:763796-764061(+)$1	1	13	16	9.0000
(((	chr19:58905764-58906012(+)$1	1	1	4	9.0000
(.(	chr14:105865723-105865978(+)$1	1	30	33	9.0000
(((	chr1:183596534-183596802(-)$1	1	59	62	9.0000
..)	chr8:144999527-144999784(-)$1	1	54	57	9.0000
(((	chr11:61557156-61557406(-)$1	1	75	78	9.0000
(((	chr11:57100459-57100702(-)$1	1	11	14	9.0000
(((	chr19:3979779-3979997(-)$1	1	4	7	9.0000
..(	chr1:228336383-228336642(+)$1	1	83	86	9.0000
(..	chr15:91422982-91423202(+)$1	1	5	8	9.0000
.((	chr19:6739618-6739892(+)$1	1	17	20	9.0000
(..	chr11:62285353-62285626(-)$1	1	27	30	9.0000
(((	chr12:122620101-122620423(+)$1	1	49	52	9.0000
...	chr4:13601208-13601464(-)$1	1	101	104	9.0000
)).	chr1:27106041-27106263(+)$1	1	47	50	9.0000
(((	chr11:75115067-75115283(+)$1	1	5	8	9.0000
)).	chr9:139904710-139904981(-)$1	1	16	19	9.0000
(((	chr11:62285221-62285458(-)$1	1	18	21	9.0000
(((	chr16:30723217-30723471(+)$1	1	92	95	9.0000
(((	chr5:140699405-140699653(-)$1	1	14	17	9.0000
(..	chrX:47001712-47001940(-)$1	1	23	26	9.0000
(((	chr2:178082455-178082673(+)$1	1	23	26	9.0000
(((	chrX:47001911-47002145(-)$1	1	16	19	9.0000
.))	chr12:112685721-112686050(-)$1	1	88	91	9.0000
(((	chr17:62499833-62500090(-)$1	1	41	44	9.0000
((.	chr4:2895679-2895920(+)$1	1	24	27	9.0000
(((	chr1:145508089-145508365(+)$1	1	2	5	9.0000
((.	chr4:104081680-104081912(-)$1	1	204	207	9.0000
)))	chr16:24802379-24802634(+)$1	1	21	24	9.0000
...	chr11:62334186-62334393(-)$1	1	46	49	9.0000
(((	chr12:49447205-49447456(-)$1	1	11	14	9.0000
..(	chr21:35469534-35469786(+)$1	1	62	65	9.0000
..(	chr13:113209127-113209425(-)$1	1	10	13	9.0000
)..	chr1:28559358-28559606(-)$1	1	78	81	9.0000
)))	chr3:23959237-23959462(+)$1	1	23	26	9.0000
(((	chr17:57774859-57775239(-)$1	1	10	13	9.0000
...	chr19:39926216-39926440(-)$1	1	3	6	9.0000
((.	chr19:39926240-39926448(-)$1	1	11	14	9.0000
)))	chr2:178129080-178129369(-)$1	1	69	72	9.0000
(((	chrX:47062956-47063197(+)$1	1	0	3	9.0000
.((	chr8:22267339-22267630(+)$1	1	4	7	9.0000
(((	chr15:45879553-45879806(+)$1	1	13	16	9.0000
(((	chr6:56966557-56966808(+)$1	1	2	5	9.0000
(((	chr4:104062952-104063166(-)$1	1	93	96	9.0000
(((	chr12:6879226-6879485(+)$1	1	2	5	9.0000
)))	chr19:10401721-10401967(+)$1	1	19	22	9.0000
.((	chr9:134103486-134103740(+)$1	1	61	64	9.0000
)))	chr3:49050517-49050787(+)$1	1	33	36	9.0000
)))	chr12:49666495-49666738(+)$1	1	69	72	9.0000
)))	chr19:572520-572802(+)$1	1	81	84	9.0000
(.(	chr11:62284190-62284535(-)$1	1	16	19	9.0000
.((	chr5:176737580-176737855(-)$1	1	12	15	9.0000
(((	chr11:62284725-62285028(-)$1	1	10	13	9.0000
.((	chr1:155030375-155030652(+)$1	1	58	61	9.0000
(.(	chr11:62300890-62301145(-)$1	1	3	6	9.0000
(((	chr2:153520551-153520772(-)$1	1	32	35	9.0000
(((	chr19:18548503-18548714(-)$1	1	32	35	9.0000
)))	chr22:38893990-38894223(-)$1	1	111	114	9.0000
)))	chr11:62284590-62284832(-)$1	1	22	25	9.0000
))(	chr5:134116720-134116959(+)$1	1	107	110	9.0000
.((	chr20:307081-307317(-)$1	1	138	141	9.0000
..)	chr22:21174739-21174981(-)$1	1	119	122	9.0000
))(	chr16:1821053-1821341(-)$1	1	38	41	9.0000
...	chr14:75265156-75265420(+)$1	1	28	31	9.0000
..)	chr3:13461403-13461664(-)$1	1	77	80	9.0000
.))	chr19:18700036-18700326(+)$1	1	56	59	9.0000
..)	chr19:1014093-1014326(-)$1	1	47	50	9.0000
)((	chr16:23690168-23690412(+)$1	1	113	116	9.0000
...	chr4:13603898-13604173(-)$1	1	107	110	9.0000
.((	chr16:725956-726265(+)$1	1	2	5	9.0000
).(	chr17:49197724-49197972(-)$1	1	34	37	9.0000
(((	chr16:28167628-28167880(-)$1	1	1	4	9.0000
((.	chr2:48025680-48025944(+)$1	1	18	21	9.0000
(..	chr1:214819016-214819246(+)$1	1	15	18	9.0000
))(	chr1:243388377-243388670(-)$1	1	103	106	9.0000
..(	chr17:35306289-35306565(+)$1	1	0	3	9.0000
(((	chr1:16054066-16054315(+)$1	1	0	3	9.0000
(..	chr1:12337783-12338029(+)$1	1	54	57	9.0000
(((	chr19:19021694-19021908(-)$1	1	41	44	9.0000

#PSSM
U : 0.97	u : 0.03	
G : 0.96	g : 0.04	
G : 0.96	g : 0.04	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_UTR_m3_run1.nuc.txt

#NT
GGGGAG	chr19:42364762-42365014(+)$1	252	239	245	18.0000
GGGGAG	chr11:62360856-62361140(-)$1	284	77	83	18.0000
GGGGAG	chr3:45265953-45266227(-)$1	274	110	116	18.0000
GGGGAG	chr11:62481456-62481709(-)$1	253	79	85	18.0000
GGGGAG	chr16:23478516-23478837(-)$1	321	131	137	18.0000
GGGGAG	chr17:73774687-73774904(-)$1	217	36	42	18.0000
GGGGAG	chr7:150778180-150778486(-)$1	306	248	254	18.0000
GGGGAG	chr12:56119202-56119499(-)$1	297	184	190	18.0000
GGGGAG	chr7:98993962-98994237(-)$1	275	115	121	18.0000
GGGGAG	chr11:71949872-71950171(+)$1	299	27	33	18.0000
GGGGAG	chr9:131018043-131018286(-)$1	243	26	32	18.0000
GGGGAG	chr1:161183957-161184238(+)$1	281	29	35	18.0000
GGGGAG	chr17:74266559-74266816(+)$1	257	102	108	18.0000
GGGGAG	chr1:44441378-44441621(+)$1	243	156	162	18.0000
GGGGAG	chr1:226548784-226549005(-)$1	221	37	43	18.0000
GGGGAG	chr1:1310354-1310630(-)$1	276	217	223	18.0000
ggggag	chr6:15249015-15249291(+)$1	276	55	61	18.0000
GGGGAG	chr3:183901577-183901839(+)$1	262	20	26	18.0000
GGGGAG	chr19:47724070-47724414(-)$1	344	142	148	18.0000
GGGGAG	chr22:38062731-38062997(+)$1	266	231	237	18.0000
GGGGAG	chr12:112460373-112460631(+)$1	258	125	131	18.0000
ggggag	chr6:125622910-125623239(-)$1	329	2	8	18.0000
ggggag	chr2:20550263-20550535(-)$1	272	14	20	18.0000
GGGGAG	chr6:33172041-33172273(+)$1	232	126	132	18.0000
GGGGAG	chr16:88718506-88718813(-)$1	307	119	125	18.0000
GGGGAG	chr15:90170752-90171066(+)$1	314	225	231	18.0000
GGGGAG	chr17:79991782-79992064(+)$1	282	17	23	18.0000
GGGGAG	chr19:4402635-4402911(+)$1	276	72	78	18.0000
GGGGAG	chr2:55200075-55200316(-)$1	241	85	91	18.0000
GGGGAG	chr16:2820985-2821297(+)$1	312	130	136	18.0000
GGGGAG	chr16:69152557-69152850(-)$1	293	3	9	18.0000
GGGGAG	chr16:30535512-30535783(-)$1	271	244	250	18.0000
ggggag	chr19:3062121-3062364(-)$1	243	2	8	18.0000
GGGGAG	chr17:40128500-40128831(-)$1	331	269	275	18.0000
GGGGAG	chr16:3777286-3777566(-)$1	280	108	114	18.0000
GGGGAG	chr1:1270721-1270977(-)$1	256	116	122	18.0000
GGGGAG	chr3:48555196-48555482(-)$1	286	79	85	18.0000
GGGGAG	chr6:31619929-31620238(-)$1	309	43	49	18.0000
GGGGAG	chr6:37142898-37143110(+)$1	212	99	105	18.0000
GGGGAG	chr19:40721244-40721517(+)$1	273	35	41	18.0000
GGGGAG	chr12:49413438-49413685(-)$1	247	7	13	18.0000
GGGGAG	chr2:242707709-242707985(+)$1	276	14	20	18.0000
GGGGAG	chr12:54679612-54679836(+)$1	224	28	34	18.0000
GGGGAG	chr7:100732787-100733074(+)$1	287	102	108	18.0000
GGGGAG	chr11:67069765-67070017(+)$1	252	152	158	18.0000
GGGGAG	chr7:108210319-108210578(+)$1	259	251	257	18.0000
GGGGAG	chr19:50310070-50310363(+)$1	293	136	142	18.0000
GGGGAG	chr12:111180474-111180691(-)$1	217	12	18	18.0000
GGGGAG	chr22:20105346-20105586(+)$1	240	96	102	18.0000

#otherMatches

#Struct PSSM
ggggg!	chr12:56632327-56632615(-)$1	288	138	144	18.0000
JJJJ}D	chr19:42364762-42365014(+)$1	252	239	245	18.0000
dfffff	chr11:62360856-62361140(-)$1	284	77	83	18.0000
JJJJJJ	chr3:45265953-45266227(-)$1	274	110	116	18.0000
EE::::	chr11:62481456-62481709(-)$1	253	79	85	18.0000
bb22ee	chr16:23478516-23478837(-)$1	321	131	137	18.0000
cc[hhh	chr17:73774687-73774904(-)$1	217	36	42	18.0000
eeeee4	chr7:150778180-150778486(-)$1	306	248	254	18.0000
=====t	chr12:56119202-56119499(-)$1	297	184	190	18.0000
BB{EEE	chr7:98993962-98994237(-)$1	275	115	121	18.0000
{A{DDD	chr11:71949872-71950171(+)$1	299	27	33	18.0000
eee$$$	chr9:131018043-131018286(-)$1	243	26	32	18.0000
eeeee[	chr1:161183957-161184238(+)$1	281	29	35	18.0000
fffff[	chr17:74266559-74266816(+)$1	257	102	108	18.0000
hhhhhm	chr1:44441378-44441621(+)$1	243	156	162	18.0000
ccciii	chr1:226548784-226549005(-)$1	221	37	43	18.0000
gggggg	chr1:1310354-1310630(-)$1	276	217	223	18.0000
C{EEEE	chr6:15249015-15249291(+)$1	276	55	61	18.0000
JJJJJJ	chr3:183901577-183901839(+)$1	262	20	26	18.0000
nnnnnc	chr19:47724070-47724414(-)$1	344	142	148	18.0000
:JJJJJ	chr22:38062731-38062997(+)$1	266	231	237	18.0000
dccc!!	chr12:112460373-112460631(+)$1	258	125	131	18.0000
{FFFFF	chr6:125622910-125623239(-)$1	329	2	8	18.0000
FFFKKJ	chr2:20550263-20550535(-)$1	272	14	20	18.0000
hhhhh:	chr6:33172041-33172273(+)$1	232	126	132	18.0000
crrrrr	chr16:88718506-88718813(-)$1	307	119	125	18.0000
ccffff	chr15:90170752-90171066(+)$1	314	225	231	18.0000
EEEE::	chr17:79991782-79992064(+)$1	282	17	23	18.0000
77777i	chr19:4402635-4402911(+)$1	276	72	78	18.0000
cc]abb	chr2:55200075-55200316(-)$1	241	85	91	18.0000
======	chr16:2820985-2821297(+)$1	312	130	136	18.0000
ccc[dd	chr16:69152557-69152850(-)$1	293	3	9	18.0000
2a22cc	chr16:30535512-30535783(-)$1	271	244	250	18.0000
EEEE{H	chr19:3062121-3062364(-)$1	243	2	8	18.0000
b]a]a]	chr17:40128500-40128831(-)$1	331	269	275	18.0000
bb[===	chr16:3777286-3777566(-)$1	280	108	114	18.0000
eeee##	chr1:1270721-1270977(-)$1	256	116	122	18.0000
======	chr3:48555196-48555482(-)$1	286	79	85	18.0000
nnnnee	chr6:31619929-31620238(-)$1	309	43	49	18.0000
dddggg	chr6:37142898-37143110(+)$1	212	99	105	18.0000
bb]a]c	chr19:40721244-40721517(+)$1	273	35	41	18.0000
ee[ggg	chr12:49413438-49413685(-)$1	247	7	13	18.0000
JDDDD{	chr2:242707709-242707985(+)$1	276	14	20	18.0000
eeee]d	chr12:54679612-54679836(+)$1	224	28	34	18.0000
eeefff	chr7:100732787-100733074(+)$1	287	102	108	18.0000
gggg::	chr11:67069765-67070017(+)$1	252	152	158	18.0000
CCC}CC	chr7:108210319-108210578(+)$1	259	251	257	18.0000
dddddd	chr19:50310070-50310363(+)$1	293	136	142	18.0000
[a[ccc	chr12:111180474-111180691(-)$1	217	12	18	18.0000
ennnnn	chr22:20105346-20105586(+)$1	240	96	102	18.0000

#DB
(((((.	chr12:56632327-56632615(-)$1	1	138	144	18.0000
)))).)	chr19:42364762-42365014(+)$1	1	239	245	18.0000
)(((((	chr11:62360856-62361140(-)$1	1	77	83	18.0000
((((((	chr3:45265953-45266227(-)$1	1	110	116	18.0000
((....	chr11:62481456-62481709(-)$1	1	79	85	18.0000
))..))	chr16:23478516-23478837(-)$1	1	131	137	18.0000
((.(((	chr17:73774687-73774904(-)$1	1	36	42	18.0000
))))).	chr7:150778180-150778486(-)$1	1	248	254	18.0000
(((((.	chr12:56119202-56119499(-)$1	1	184	190	18.0000
((.(((	chr7:98993962-98994237(-)$1	1	115	121	18.0000
.(.(((	chr11:71949872-71950171(+)$1	1	27	33	18.0000
(((...	chr9:131018043-131018286(-)$1	1	26	32	18.0000
(((((.	chr1:161183957-161184238(+)$1	1	29	35	18.0000
(((((.	chr17:74266559-74266816(+)$1	1	102	108	18.0000
(((((.	chr1:44441378-44441621(+)$1	1	156	162	18.0000
))))))	chr1:226548784-226549005(-)$1	1	37	43	18.0000
((((((	chr1:1310354-1310630(-)$1	1	217	223	18.0000
(.((((	chr6:15249015-15249291(+)$1	1	55	61	18.0000
((((((	chr3:183901577-183901839(+)$1	1	20	26	18.0000
.....)	chr19:47724070-47724414(-)$1	1	142	148	18.0000
.)))))	chr22:38062731-38062997(+)$1	1	231	237	18.0000
((((..	chr12:112460373-112460631(+)$1	1	125	131	18.0000
.(((((	chr6:125622910-125623239(-)$1	1	2	8	18.0000
(((..(	chr2:20550263-20550535(-)$1	1	14	20	18.0000
))))).	chr6:33172041-33172273(+)$1	1	126	132	18.0000
(.....	chr16:88718506-88718813(-)$1	1	119	125	18.0000
((((((	chr15:90170752-90171066(+)$1	1	225	231	18.0000
((((..	chr17:79991782-79992064(+)$1	1	17	23	18.0000
.....)	chr19:4402635-4402911(+)$1	1	72	78	18.0000
)).)((	chr2:55200075-55200316(-)$1	1	85	91	18.0000
))))))	chr16:2820985-2821297(+)$1	1	130	136	18.0000
(((.((	chr16:69152557-69152850(-)$1	1	3	9	18.0000
.)..))	chr16:30535512-30535783(-)$1	1	244	250	18.0000
((((.(	chr19:3062121-3062364(-)$1	1	2	8	18.0000
).).).	chr17:40128500-40128831(-)$1	1	269	275	18.0000
((.(((	chr16:3777286-3777566(-)$1	1	108	114	18.0000
((((..	chr1:1270721-1270977(-)$1	1	116	122	18.0000
))))))	chr3:48555196-48555482(-)$1	1	79	85	18.0000
....))	chr6:31619929-31620238(-)$1	1	43	49	18.0000
))))))	chr6:37142898-37143110(+)$1	1	99	105	18.0000
)).).)	chr19:40721244-40721517(+)$1	1	35	41	18.0000
((.(((	chr12:49413438-49413685(-)$1	1	7	13	18.0000
(((((.	chr2:242707709-242707985(+)$1	1	14	20	18.0000
)))).)	chr12:54679612-54679836(+)$1	1	28	34	18.0000
))))))	chr7:100732787-100733074(+)$1	1	102	108	18.0000
))))..	chr11:67069765-67070017(+)$1	1	152	158	18.0000
))).))	chr7:108210319-108210578(+)$1	1	251	257	18.0000
((((((	chr19:50310070-50310363(+)$1	1	136	142	18.0000
.(.(((	chr12:111180474-111180691(-)$1	1	12	18	18.0000
(.....	chr22:20105346-20105586(+)$1	1	96	102	18.0000

#PSSM
G : 0.92	g : 0.08	
G : 0.92	g : 0.08	
G : 0.92	g : 0.08	
G : 0.92	g : 0.08	
A : 0.92	a : 0.08	
G : 0.92	g : 0.08	

#score	900.0000000000001
#seq	50
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_UTR_m1_run1.nuc.txt

#NT
GAUGAUGACG	chr11:75111422-75111676(+)$1	254	24	34	18.7499
CAUGAUGUCA	chr6:31804781-31804985(+)$1	204	111	121	19.2857
GAUGAUGACG	chr11:75111376-75111580(+)$1	204	70	80	18.7499
CAUGAAAACA	chr3:96336291-96336499(-)$1	208	63	73	15.3571
CAUGAUGACA	chr15:25227070-25227283(+)$1	213	74	84	21.7857
GAUGAUGACC	chr6:31802963-31803166(+)$1	203	79	89	18.5714
GAUGAUGACG	chr11:75111380-75111614(+)$1	234	66	76	18.7499
GAUGAUGACG	chr11:75111334-75111576(+)$1	242	112	122	18.7499
CAUGAAAACA	chr3:96336251-96336454(-)$1	203	18	28	15.3571
CAUGAAAACA	chr3:96336254-96336458(-)$1	204	22	32	15.3571
CAUGAUGACA	chr15:25227045-25227270(+)$1	225	99	109	21.7857
CAUGAAAACA	chr3:96336267-96336491(-)$1	224	55	65	15.3571
GAUGAUGGCA	chr18:47017987-47018192(-)$1	205	97	107	19.2857
CAUGAUGUCA	chr6:31804750-31804954(+)$1	204	142	152	19.2857
GAUGAUGGCA	chr18:47017966-47018187(-)$1	221	92	102	19.2857
aaugauggca	chr11:122930024-122930231(-)$1	207	154	164	17.4999
GAUGAUGGCA	chr18:47017935-47018151(-)$1	216	56	66	19.2857
caugaugauu	chr17:8076800-8077005(-)$1	205	152	162	14.6428
CAUGAAAACA	chr3:96336258-96336467(-)$1	209	31	41	15.3571
GAUGAUGGCA	chr18:47017954-47018166(-)$1	212	71	81	19.2857
CAUGAUGACA	chr15:25227040-25227245(+)$1	205	104	114	21.7857
GAUGAUGACC	chr6:31802966-31803176(+)$1	210	76	86	18.5714
AAUGAUGAGA	chr4:74279205-74279419(+)$1	214	42	52	15.3571
CAUGAUGUCA	chr6:31804756-31804977(+)$1	221	136	146	19.2857
caugaugauu	chr17:8076761-8077000(-)$1	239	147	157	14.6428
GAUGAUGACC	chr6:31802976-31803186(+)$1	210	66	76	18.5714
GAUGAUGGCA	chr18:47017992-47018199(-)$1	207	104	114	19.2857

#otherMatches

#Struct PSSM
f]ccc]dddd	chr6:31804777-31804981(+)$1	204	115	125	19.2857
eeee$$$$$e	chr11:75111422-75111676(+)$1	254	24	34	18.7499
f]ccc]dddd	chr6:31804781-31804985(+)$1	204	111	121	19.2857
eeee$$$$$e	chr11:75111376-75111580(+)$1	204	70	80	18.7499
fffcccmmmm	chr3:96336291-96336499(-)$1	208	63	73	15.3571
f[bboooooo	chr15:25227070-25227283(+)$1	213	74	84	21.7857
^^^^^^^^dd	chr6:31802963-31803166(+)$1	203	79	89	18.5714
eeee$$$$$e	chr11:75111380-75111614(+)$1	234	66	76	18.7499
dddqqqqqqq	chr11:75111334-75111576(+)$1	242	112	122	18.7499
fff:::CCCM	chr3:96336251-96336454(-)$1	203	18	28	15.3571
fff:::CCCM	chr3:96336254-96336458(-)$1	204	22	32	15.3571
f[bboooooo	chr15:25227045-25227270(+)$1	225	99	109	21.7857
fffcccmmmm	chr3:96336267-96336491(-)$1	224	55	65	15.3571
qqqqqqccc4	chr18:47017987-47018192(-)$1	205	97	107	19.2857
f]ccc]dddd	chr6:31804750-31804954(+)$1	204	142	152	19.2857
"""bb[bbdd	chr18:47017966-47018187(-)$1	221	92	102	19.2857
22bb]ccc]c	chr11:122930024-122930231(-)$1	207	154	164	17.4999
CCCKKBB:::	chr18:47017935-47018151(-)$1	216	56	66	19.2857
:::::eeeee	chr17:8076800-8077005(-)$1	205	152	162	14.6428
fff7777777	chr3:96336258-96336467(-)$1	209	31	41	15.3571
"""bb[bbdd	chr18:47017954-47018166(-)$1	212	71	81	19.2857
f[bboooooo	chr15:25227040-25227245(+)$1	205	104	114	21.7857
^^^^^^^^dd	chr6:31802966-31803176(+)$1	210	76	86	18.5714
::::::::::	chr4:74279205-74279419(+)$1	214	42	52	15.3571
f]ccc]dddd	chr6:31804756-31804977(+)$1	221	136	146	19.2857
OOOOOOCCC{	chr17:8076761-8077000(-)$1	239	147	157	14.6428
^^^^^^^^dd	chr6:31802976-31803186(+)$1	210	66	76	18.5714
"""bb[bbdd	chr18:47017992-47018199(-)$1	207	104	114	19.2857

#DB
).))).))))	chr6:31804777-31804981(+)$1	1	115	125	19.2857
((((.....(	chr11:75111422-75111676(+)$1	1	24	34	18.7499
).))).))))	chr6:31804781-31804985(+)$1	1	111	121	19.2857
((((.....(	chr11:75111376-75111580(+)$1	1	70	80	18.7499
)))(((....	chr3:96336291-96336499(-)$1	1	63	73	15.3571
(.((......	chr15:25227070-25227283(+)$1	1	74	84	21.7857
........))	chr6:31802963-31803166(+)$1	1	79	89	18.5714
((((.....(	chr11:75111380-75111614(+)$1	1	66	76	18.7499
(((.......	chr11:75111334-75111576(+)$1	1	112	122	18.7499
)))...(((.	chr3:96336251-96336454(-)$1	1	18	28	15.3571
)))...(((.	chr3:96336254-96336458(-)$1	1	22	32	15.3571
(.((......	chr15:25227045-25227270(+)$1	1	99	109	21.7857
)))(((....	chr3:96336267-96336491(-)$1	1	55	65	15.3571
......))).	chr18:47017987-47018192(-)$1	1	97	107	19.2857
).))).))))	chr6:31804750-31804954(+)$1	1	142	152	19.2857
...((.((((	chr18:47017966-47018187(-)$1	1	92	102	19.2857
..)).))).)	chr11:122930024-122930231(-)$1	1	154	164	17.4999
(((..((...	chr18:47017935-47018151(-)$1	1	56	66	19.2857
.....(((((	chr17:8076800-8077005(-)$1	1	152	162	14.6428
))).......	chr3:96336258-96336467(-)$1	1	31	41	15.3571
...((.((((	chr18:47017954-47018166(-)$1	1	71	81	19.2857
(.((......	chr15:25227040-25227245(+)$1	1	104	114	21.7857
........))	chr6:31802966-31803176(+)$1	1	76	86	18.5714
..........	chr4:74279205-74279419(+)$1	1	42	52	15.3571
).))).))))	chr6:31804756-31804977(+)$1	1	136	146	19.2857
......(((.	chr17:8076761-8077000(-)$1	1	147	157	14.6428
........))	chr6:31802976-31803186(+)$1	1	66	76	18.5714
...((.((((	chr18:47017992-47018199(-)$1	1	104	114	19.2857

#PSSM
C : 0.42	G : 0.42	c : 0.07	a : 0.03	A : 0.03	
A : 0.89	a : 0.10	
U : 0.89	u : 0.10	
G : 0.89	g : 0.10	
A : 0.89	a : 0.10	
U : 0.71	A : 0.17	u : 0.10	
G : 0.71	A : 0.17	g : 0.10	
A : 0.57	G : 0.17	U : 0.14	a : 0.07	g : 0.03	
C : 0.85	u : 0.07	c : 0.03	G : 0.03	
A : 0.64	G : 0.14	C : 0.10	u : 0.07	a : 0.03	

#score	508.5714285714285
#seq	28
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_transcript_m2_run1.nuc.txt

#NT
GGGUGGG	chr20:60963413-60963656(+)$1	243	225	232	17.2857
GGGUGGG	chr5:177022803-177023066(+)$1	263	93	100	17.2857
GGGUGUG	chr19:11664184-11664525(-)$1	341	51	58	13.4999
GGGUGAG	chr1:45480513-45480766(+)$1	253	8	15	13.0714
GGCUGGG	chr16:88876729-88876969(-)$1	240	146	153	13.3571
gggugug	chr21:45337969-45338299(+)$1	330	206	213	13.4999
GGGCGGG	chr3:53259587-53259872(-)$1	285	100	107	13.1428
GGGUGGG	chr2:130939800-130940064(+)$1	264	236	243	17.2857
ugguggg	chr17:34171673-34172062(+)$1	389	18	25	12.7142
GGGUGCG	chr6:33171642-33171923(+)$1	281	0	7	13.1428
GGCUGGG	chr3:13357654-13357916(-)$1	262	38	45	13.3571
GGGAGGG	chr9:130931229-130931515(-)$1	286	193	200	13.2142
GGUUGGG	chr1:155110874-155111119(+)$1	245	110	117	13.2142
GGGUUGG	chr19:49999593-49999828(+)$1	235	146	153	13.0714
GGGUGGG	chrX:12994307-12994581(+)$1	274	208	215	17.2857
GGAUGGG	chr19:18652545-18652802(-)$1	257	102	109	13.1428
GGGAGGG	chr6:32083315-32083602(-)$1	287	117	124	13.2142
GGGUGGG	chr16:1749161-1749419(+)$1	258	107	114	17.2857
GCGUGGG	chr10:70101670-70101954(+)$1	284	125	132	12.5714
GGGUUGG	chr14:78182037-78182305(+)$1	268	106	113	13.0714
UGGUGGG	chrX:153195382-153195704(-)$1	322	171	178	12.7142
GGGUGUG	chr19:11561610-11561862(+)$1	252	200	207	13.4999
GGGUGUG	chrX:49453959-49454202(-)$1	243	103	110	13.4999
GGGUGGG	chr11:67379584-67379837(+)$1	253	181	188	17.2857
GGGUGGG	chr15:44063537-44063788(+)$1	251	123	130	17.2857
GGGUGGU	chr12:6647224-6647442(+)$1	218	71	78	13.3571
GGGUGGU	chr7:99056692-99056957(-)$1	265	229	236	13.3571
GGGUGUG	chr19:51848337-51848636(-)$1	299	45	52	13.4999
GGGCGGG	chr11:842313-842584(-)$1	271	7	14	13.1428
GGGUUGG	chr16:88713416-88713683(-)$1	267	235	242	13.0714
GGGUGGU	chr12:6647174-6647403(+)$1	229	121	128	13.3571
GGGUGGG	chr6:31698288-31698537(-)$1	249	111	118	17.2857
GGUUGGG	chr18:9124770-9125049(+)$1	279	108	115	13.2142
GGGUUGG	chr7:100276471-100276745(+)$1	274	184	191	13.0714
GGGUGGU	chr12:6647203-6647424(+)$1	221	92	99	13.3571
GGGUGGG	chr19:14198581-14198861(-)$1	280	234	241	17.2857
GGGUGGC	chrX:118925442-118925671(-)$1	229	163	170	13.2142
GUGUGGG	chr16:30535504-30535815(-)$1	311	3	10	12.6428
GGGUGGG	chr11:75283115-75283414(+)$1	299	121	128	17.2857
GGCUGGG	chr16:447333-447604(+)$1	271	62	69	13.3571
GGGUGGC	chr3:23958560-23958765(+)$1	205	24	31	13.2142
GGGUGGG	chr19:5691441-5691662(+)$1	221	51	58	17.2857
GGGUGGC	chrX:16862835-16863225(-)$1	390	166	173	13.2142
GGCUGGG	chr16:83842831-83843130(+)$1	299	139	146	13.3571
GGGUGCG	chr1:228333111-228333409(+)$1	298	237	244	13.1428
GGGUGUG	chr3:98309808-98310077(-)$1	269	110	117	13.4999
GGGGGGG	chr12:74934869-74935136(+)$1	267	76	83	13.0714
GGGGGGG	chr11:8707219-8707478(+)$1	259	107	114	13.0714
GGGUGGG	chr14:70238191-70238473(+)$1	282	92	99	17.2857
GGGUGGG	chr16:30535356-30535621(-)$1	265	176	183	17.2857
GGGUGUG	chr1:150192895-150193150(-)$1	255	190	197	13.4999
GGUUGGG	chr17:56408881-56409103(-)$1	222	15	22	13.2142
GGGCGGG	chr12:7311329-7311608(+)$1	279	135	142	13.1428
GGGUAGG	chr12:53689583-53689821(+)$1	238	147	154	12.7857
GGGUGGG	chr17:45299100-45299319(+)$1	219	166	173	17.2857
ggguggg	chr2:97559905-97560192(-)$1	287	38	45	17.2857
GGAUGGG	chr7:97481372-97481651(-)$1	279	125	132	13.1428
GGGUGGA	chr1:36602210-36602493(-)$1	283	86	93	13.1428
GGGUGGU	chr19:54704627-54704857(+)$1	230	114	121	13.3571
GGGAGGG	chr6:166779385-166779670(-)$1	285	185	192	13.2142
AGGUGGG	chr19:40330983-40331254(-)$1	271	35	42	12.7142
GGGUGGG	chr15:74702099-74702353(-)$1	254	64	71	17.2857
GGGUGGG	chr19:46318626-46318898(-)$1	272	101	108	17.2857
agguggg	chr2:232576553-232576793(+)$1	240	102	109	12.7142
GGGUGGA	chr17:49237241-49237456(+)$1	215	18	25	13.1428
GGGAGGG	chr16:2821102-2821394(+)$1	292	14	21	13.2142
ggguggg	chr16:88584182-88584451(+)$1	269	17	24	17.2857
GGGUUGG	chr9:127624091-127624299(-)$1	208	157	164	13.0714
GUGUGGG	chr20:57603705-57603998(-)$1	293	145	152	12.6428

#otherMatches

#Struct PSSM
eeeee!!	chr14:23566985-23567327(+)$1	342	194	201	13.3571
ff:::ee	chr20:60963413-60963656(+)$1	243	225	232	17.2857
IIIIIII	chr5:177022803-177023066(+)$1	263	93	100	17.2857
HHHHKKE	chr19:11664184-11664525(-)$1	341	51	58	13.4999
ddooooo	chr1:45480513-45480766(+)$1	253	8	15	13.0714
=======	chr16:88876729-88876969(-)$1	240	146	153	13.3571
bb]a]a]	chr21:45337969-45338299(+)$1	330	206	213	13.4999
lccc]cc	chr3:53259587-53259872(-)$1	285	100	107	13.1428
2eeeee2	chr2:130939800-130940064(+)$1	264	236	243	17.2857
gggg[au	chr17:34171673-34172062(+)$1	389	18	25	12.7142
EEEEE{A	chr6:33171642-33171923(+)$1	281	0	7	13.1428
fffffCC	chr3:13357654-13357916(-)$1	262	38	45	13.3571
fff[ccc	chr9:130931229-130931515(-)$1	286	193	200	13.2142
=====nn	chr1:155110874-155111119(+)$1	245	110	117	13.2142
a!!dddd	chr19:49999593-49999828(+)$1	235	146	153	13.0714
eeee]ee	chrX:12994307-12994581(+)$1	274	208	215	17.2857
bb]ffff	chr19:18652545-18652802(-)$1	257	102	109	13.1428
ffbb]ff	chr6:32083315-32083602(-)$1	287	117	124	13.2142
BBEEEEE	chr16:1749161-1749419(+)$1	258	107	114	17.2857
JJJJJJJ	chr10:70101670-70101954(+)$1	284	125	132	12.5714
c4444cc	chr14:78182037-78182305(+)$1	268	106	113	13.0714
{GGGGGG	chrX:153195382-153195704(-)$1	322	171	178	12.7142
GGG}DDD	chr19:11561610-11561862(+)$1	252	200	207	13.4999
qbb]fff	chrX:49453959-49454202(-)$1	243	103	110	13.4999
iiiiiiC	chr11:67379584-67379837(+)$1	253	181	188	17.2857
gggeeee	chr15:44063537-44063788(+)$1	251	123	130	17.2857
BB{FFFF	chr12:6647224-6647442(+)$1	218	71	78	13.3571
nnna]dd	chr7:99056692-99056957(-)$1	265	229	236	13.3571
eee[ddd	chr19:51848337-51848636(-)$1	299	45	52	13.4999
ddddlll	chr11:842313-842584(-)$1	271	7	14	13.1428
GGGYYDD	chr16:88713416-88713683(-)$1	267	235	242	13.0714
BB{FFFF	chr12:6647174-6647403(+)$1	229	121	128	13.3571
"""gggg	chr6:31698288-31698537(-)$1	249	111	118	17.2857
$ffffff	chr18:9124770-9125049(+)$1	279	108	115	13.2142
=====""	chr7:100276471-100276745(+)$1	274	184	191	13.0714
BB{FFFF	chr12:6647203-6647424(+)$1	221	92	99	13.3571
fGGGGGG	chr19:14198581-14198861(-)$1	280	234	241	17.2857
dd[cccm	chrX:118925442-118925671(-)$1	229	163	170	13.2142
DDKKEEE	chr16:30535504-30535815(-)$1	311	3	10	12.6428
cc]bbbb	chr11:75283115-75283414(+)$1	299	121	128	17.2857
HHfffff	chr16:447333-447604(+)$1	271	62	69	13.3571
=======	chr3:23958560-23958765(+)$1	205	24	31	13.2142
EEE::::	chr19:5691441-5691662(+)$1	221	51	58	17.2857
YYEEEEE	chrX:16862835-16863225(-)$1	390	166	173	13.2142
bhhhhhh	chr16:83842831-83843130(+)$1	299	139	146	13.3571
GGGGGG?	chr1:228333111-228333409(+)$1	298	237	244	13.1428
ddd]ddd	chr3:98309808-98310077(-)$1	269	110	117	13.4999
hhhhhhh	chr12:74934869-74935136(+)$1	267	76	83	13.0714
eeeeea[	chr11:8707219-8707478(+)$1	259	107	114	13.0714
eedddd2	chr14:70238191-70238473(+)$1	282	92	99	17.2857
dccc%%%	chr16:30535356-30535621(-)$1	265	176	183	17.2857
ee88888	chr1:150192895-150193150(-)$1	255	190	197	13.4999
mmmffff	chr17:56408881-56409103(-)$1	222	15	22	13.2142
ff[dddd	chr12:7311329-7311608(+)$1	279	135	142	13.1428
GGGGG}F	chr12:53689583-53689821(+)$1	238	147	154	12.7857
bcccddd	chr17:45299100-45299319(+)$1	219	166	173	17.2857
[a[ammm	chr2:97559905-97560192(-)$1	287	38	45	17.2857
a]iiiii	chr7:97481372-97481651(-)$1	279	125	132	13.1428
hhhhhhh	chr1:36602210-36602493(-)$1	283	86	93	13.1428
mmmmbb]	chr19:54704627-54704857(+)$1	230	114	121	13.3571
ccFFFFF	chr6:166779385-166779670(-)$1	285	185	192	13.2142
ddd[ddd	chr19:40330983-40331254(-)$1	271	35	42	12.7142
]ccc]bb	chr15:74702099-74702353(-)$1	254	64	71	17.2857
9dddd33	chr19:46318626-46318898(-)$1	272	101	108	17.2857
eeee[hh	chr2:232576553-232576793(+)$1	240	102	109	12.7142
JJJJJJJ	chr17:49237241-49237456(+)$1	215	18	25	13.1428
JJJEEEE	chr16:2821102-2821394(+)$1	292	14	21	13.2142
EEE{AKK	chr16:88584182-88584451(+)$1	269	17	24	17.2857
fff22gg	chr9:127624091-127624299(-)$1	208	157	164	13.0714
GGGGGGb	chr20:57603705-57603998(-)$1	293	145	152	12.6428

#DB
(((((..	chr14:23566985-23567327(+)$1	1	194	201	13.3571
))...((	chr20:60963413-60963656(+)$1	1	225	232	17.2857
)))))))	chr5:177022803-177023066(+)$1	1	93	100	17.2857
((((..(	chr19:11664184-11664525(-)$1	1	51	58	13.4999
((.....	chr1:45480513-45480766(+)$1	1	8	15	13.0714
(((((((	chr16:88876729-88876969(-)$1	1	146	153	13.3571
)).).).	chr21:45337969-45338299(+)$1	1	206	213	13.4999
.))).))	chr3:53259587-53259872(-)$1	1	100	107	13.1428
.))))).	chr2:130939800-130940064(+)$1	1	236	243	17.2857
((((.(.	chr17:34171673-34172062(+)$1	1	18	25	12.7142
(((((.(	chr6:33171642-33171923(+)$1	1	0	7	13.1428
)))))((	chr3:13357654-13357916(-)$1	1	38	45	13.3571
(((.(((	chr9:130931229-130931515(-)$1	1	193	200	13.2142
(((((..	chr1:155110874-155111119(+)$1	1	110	117	13.2142
(..((((	chr19:49999593-49999828(+)$1	1	146	153	13.0714
)))).))	chrX:12994307-12994581(+)$1	1	208	215	17.2857
)).))))	chr19:18652545-18652802(-)$1	1	102	109	13.1428
)))).))	chr6:32083315-32083602(-)$1	1	117	124	13.2142
))(((((	chr16:1749161-1749419(+)$1	1	107	114	17.2857
)))))))	chr10:70101670-70101954(+)$1	1	125	132	12.5714
)....))	chr14:78182037-78182305(+)$1	1	106	113	13.0714
.((((((	chrX:153195382-153195704(-)$1	1	171	178	12.7142
))).)))	chr19:11561610-11561862(+)$1	1	200	207	13.4999
.)).)))	chrX:49453959-49454202(-)$1	1	103	110	13.4999
)))))))	chr11:67379584-67379837(+)$1	1	181	188	17.2857
(((((((	chr15:44063537-44063788(+)$1	1	123	130	17.2857
((.((((	chr12:6647224-6647442(+)$1	1	71	78	13.3571
...).))	chr7:99056692-99056957(-)$1	1	229	236	13.3571
(((.(((	chr19:51848337-51848636(-)$1	1	45	52	13.4999
((((...	chr11:842313-842584(-)$1	1	7	14	13.1428
)))..))	chr16:88713416-88713683(-)$1	1	235	242	13.0714
((.((((	chr12:6647174-6647403(+)$1	1	121	128	13.3571
...((((	chr6:31698288-31698537(-)$1	1	111	118	17.2857
.((((((	chr18:9124770-9125049(+)$1	1	108	115	13.2142
(((((..	chr7:100276471-100276745(+)$1	1	184	191	13.0714
((.((((	chr12:6647203-6647424(+)$1	1	92	99	13.3571
)))))))	chr19:14198581-14198861(-)$1	1	234	241	17.2857
((.(((.	chrX:118925442-118925671(-)$1	1	163	170	13.2142
((..(((	chr16:30535504-30535815(-)$1	1	3	10	12.6428
)).))((	chr11:75283115-75283414(+)$1	1	121	128	17.2857
(((((((	chr16:447333-447604(+)$1	1	62	69	13.3571
(((((((	chr3:23958560-23958765(+)$1	1	24	31	13.2142
(((....	chr19:5691441-5691662(+)$1	1	51	58	17.2857
..)))))	chrX:16862835-16863225(-)$1	1	166	173	13.2142
)))))))	chr16:83842831-83843130(+)$1	1	139	146	13.3571
)))))).	chr1:228333111-228333409(+)$1	1	237	244	13.1428
))).)))	chr3:98309808-98310077(-)$1	1	110	117	13.4999
(((((((	chr12:74934869-74935136(+)$1	1	76	83	13.0714
((((((.	chr11:8707219-8707478(+)$1	1	107	114	13.0714
)))))).	chr14:70238191-70238473(+)$1	1	92	99	17.2857
((((...	chr16:30535356-30535621(-)$1	1	176	183	17.2857
)).....	chr1:150192895-150193150(-)$1	1	190	197	13.4999
...))))	chr17:56408881-56409103(-)$1	1	15	22	13.2142
((.((((	chr12:7311329-7311608(+)$1	1	135	142	13.1428
))))).)	chr12:53689583-53689821(+)$1	1	147	154	12.7857
)))))))	chr17:45299100-45299319(+)$1	1	166	173	17.2857
.(.(...	chr2:97559905-97560192(-)$1	1	38	45	17.2857
).)))))	chr7:97481372-97481651(-)$1	1	125	132	13.1428
)))))))	chr1:36602210-36602493(-)$1	1	86	93	13.1428
....)).	chr19:54704627-54704857(+)$1	1	114	121	13.3571
)))))))	chr6:166779385-166779670(-)$1	1	185	192	13.2142
(((.(((	chr19:40330983-40331254(-)$1	1	35	42	12.7142
.))).))	chr15:74702099-74702353(-)$1	1	64	71	17.2857
.))))..	chr19:46318626-46318898(-)$1	1	101	108	17.2857
((((.((	chr2:232576553-232576793(+)$1	1	102	109	12.7142
(((((((	chr17:49237241-49237456(+)$1	1	18	25	13.1428
(((((((	chr16:2821102-2821394(+)$1	1	14	21	13.2142
(((.(..	chr16:88584182-88584451(+)$1	1	17	24	17.2857
)))..))	chr9:127624091-127624299(-)$1	1	157	164	13.0714
))))))(	chr20:57603705-57603998(-)$1	1	145	152	12.6428

#PSSM
G : 0.89	g : 0.04	u : 0.01	U : 0.01	A : 0.01	a : 0.01	
G : 0.88	g : 0.07	U : 0.02	C : 0.01	
G : 0.78	C : 0.07	g : 0.07	U : 0.04	A : 0.02	
U : 0.79	u : 0.07	A : 0.05	C : 0.04	G : 0.02	
G : 0.84	g : 0.07	U : 0.07	A : 0.01	
G : 0.79	U : 0.08	g : 0.05	C : 0.02	A : 0.01	u : 0.01	
G : 0.78	g : 0.07	U : 0.07	C : 0.04	A : 0.02	

#score	995.714285714284
#seq	70
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_CDS_m3_run1.nuc.txt

#NT
CACGGUGAGAGCAAGACUCUUAUUCUCUCAAAGAGGUAGAGUUUCAGUGUUCUAAUGCCUUUUUUCUUCUUUCAGUCUCAUCUUAAAGAAAUUCAAAGUGCAUUUGUUUCAGUUCUAUCAGAAAAUGAUGGUAGGUUGUUAAUAUUUGAUUUCUAAACUUAAUUGAACUUGUAUUUUAAAUGUUCAAAAACCUGGAUUAAUGAACAUGAAAGAAAACUUUCUUGAGCUGUGUGAUUAAAACAAUUAUUAA	chr9:114155834-114156141(-)$1	307	52	302	357.5000

#otherMatches

#Struct PSSM
E:::::JJJJJJJJJJJKKHHHHHHHHKKGGGGGGGKKAhhhhhhhh[ccc[ggggggg[dddd[eeeee[ddddllldddd]eeeee]dddd]ggggggg]ccc333hhhhhhhh::bb[bbmmmmbb]bb:::::::::AYYGGGGGGGYYHHHHHHHH}JJJJJJJJJJJhhhhhhhhqqqqqqqqhhhhhhhh:EEEEEeeeeesssssssssseeeee:iiiiiiiiipppppppiiiiiiiii:	chr5:61781112-61781394(+)$1	282	9	259	357.5000
HHHHHH:ffffffggggggg"""eeeeellleeeee]ggggggg333ffffffeeeeedddd####ffffff[bboooooobb]ffffff4444dddd]eeeee::::::::::ffffffnnnnnffffffffffff"""iiiiiiiii^^^^^^^^^^^^^^^^^^^^^^^^^^iiiiiiiii4444ffffff::::::::::bb[eeeeemmmmeeeee]bb:HHHHHHHH______FFFFFF:::::	chr9:114155834-114156141(-)$1	307	52	302	357.5000

#DB
(.....(((((((((((..((((((((..(((((((..(((((((((.(((.(((((((.((((.(((((.((((...)))).))))).)))).))))))).)))...))))))))..((.((....)).)).........)..)))))))..)))))))).)))))))))))((((((((........)))))))).)))))(((((..........))))).(((((((((.......))))))))).	chr5:61781112-61781394(+)$1	1	9	259	357.5000
((((((.(((((((((((((...(((((...))))).)))))))...))))))(((((((((....((((((.((......)).))))))....)))).)))))..........((((((.....))))))((((((...(((((((((..........................)))))))))....))))))..........((.(((((....))))).)).))))))))......)))))).....	chr9:114155834-114156141(-)$1	1	52	302	357.5000

#PSSM
C : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
A : 1.00	

#score	715.0
#seq	2
#width	250
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_CDS_m1_run2.nuc.txt

#NT
AGAAGAAGAAGA	chr6:44219780-44220024(+)$1	244	138	150	28.4468
agaaaaagaaga	chr19:11106934-11107156(+)$1	222	96	108	24.6170
UGAAGAAGAAGA	chr11:57093767-57094040(-)$1	273	93	105	25.1489
AGAAGAAGGAGA	chrX:64958286-64958506(+)$1	220	155	167	24.6170
AGAAGAAGAAAU	chr17:16022653-16022900(-)$1	247	135	147	19.9361
GGAAGAAGAAGA	chr11:65830997-65831229(+)$1	232	172	184	25.3617
agaacaagaaga	chr2:102472476-102472701(+)$1	225	18	30	24.5106
AGAAGAAGAACU	chr19:39949543-39949789(+)$1	246	110	122	19.9361
AAAGGAAGAAGA	chr11:6623077-6623370(-)$1	293	34	46	20.7872
AGGAGAAGAAGA	chr17:7793859-7794161(+)$1	302	147	159	24.0851
UGAAGAAGAAGG	chr11:85375183-85375482(-)$1	299	230	242	21.4255
AGAAGAAAAGGA	chr6:159191695-159191929(-)$1	234	20	32	20.5744
AGAAGAAAGAGA	chr9:104316962-104317226(+)$1	264	56	68	20.7872
AGAAGAAGGAGA	chr12:76442912-76443131(-)$1	219	109	121	24.6170
GGAAGAGGAAGA	chr7:44524668-44524977(-)$1	309	174	186	21.2127
ACAAGAAGAAGA	chr11:118888610-118888864(-)$1	254	114	126	24.2978
agaagaaaaaga	chr20:17640718-17641026(-)$1	308	46	58	24.6170
AGAGAAAGAAGA	chr11:16776314-16776566(+)$1	252	210	222	20.8936
AAAAGAAGAGGA	chr11:57094075-57094338(-)$1	263	139	151	20.4680
aggagaagaaga	chr10:8007462-8007790(+)$1	328	127	139	24.0851
CGAAGAAGAAGU	chr20:20024035-20024322(-)$1	287	171	183	21.1063
AGAACAAGAAGA	chr16:3785932-3786230(-)$1	298	133	145	24.5106
AGAAAAAGAAGG	chr1:32374231-32374598(-)$1	367	35	47	20.8936
ggaagaagaaga	chr4:174253164-174253374(-)$1	210	95	107	25.3617
AGAAGAUGAAGA	chr2:232327815-232328127(-)$1	312	183	195	24.1914
AGAAGGACAAGA	chr1:151239548-151239802(+)$1	254	239	251	19.6170
AGAAGCAGAAGG	chr15:66727350-66727642(+)$1	292	100	112	20.1489
GGAAGAAGAAGA	chr19:10262004-10262272(-)$1	268	143	155	25.3617
AGAAGUAGAAGA	chr12:53427713-53427918(+)$1	205	18	30	23.8723
AGAAGAAGGAGA	chr12:76442879-76443089(-)$1	210	67	79	24.6170
ACAAGAAGAAGA	chr11:118888566-118888770(-)$1	204	20	32	24.2978
cgaggaagaaga	chr11:71821036-71821372(-)$1	336	112	124	21.2127
AGAAGAGGAAGA	chr11:3023707-3023932(-)$1	225	112	124	24.2978
GGAAGAAAAAGA	chr17:61901085-61901413(-)$1	328	100	112	21.5319
UGAGGAAGAAGA	chr15:78841118-78841396(+)$1	278	101	113	21.4255
AGAAAAAGGAGA	chr15:91524889-91525165(-)$1	276	24	36	20.7872
agaggaagagga	chr1:23637192-23637465(-)$1	273	114	126	20.6808
AGAACAAGAAGG	chr16:23570812-23571102(+)$1	290	153	165	20.7872
AGAAGAAGAAGA	chr19:51848383-51848732(-)$1	349	104	116	28.4468
AGCAGAAGAAGC	chr15:66791644-66791857(-)$1	213	0	12	20.0425
AAAAGAAGAUGA	chr15:49437099-49437376(-)$1	277	172	184	20.4680
GGAAGAAAAAGA	chr17:65849954-65850247(+)$1	293	144	156	21.5319
UGAAGAAGAUGA	chr1:93825949-93826208(+)$1	259	222	234	21.1063
AAAAGAAGAAGA	chr1:61553856-61554142(+)$1	286	83	95	24.5106
agaggaugaaga	chr14:102549270-102549512(-)$1	242	42	54	20.4680
AGAAGAGGAUGA	chr9:35057309-35057628(-)$1	319	106	118	20.2553

#otherMatches

#Struct PSSM
2ccc::::::::	chr15:44085805-44086063(+)$1	258	119	131	19.8297
++++++++++++	chr6:44219780-44220024(+)$1	244	138	150	28.4468
::::::::::::	chr19:11106934-11107156(+)$1	222	96	108	24.6170
gggggg]dddd:	chr11:57093767-57094040(-)$1	273	93	105	25.1489
}BB}CCCCCC??	chrX:64958286-64958506(+)$1	220	155	167	24.6170
hhhh[eeeee[b	chr17:16022653-16022900(-)$1	247	135	147	19.9361
qqqqqqbb5555	chr11:65830997-65831229(+)$1	232	172	184	25.3617
DDFFFFFF::::	chr2:102472476-102472701(+)$1	225	18	30	24.5106
a!!ccc[bb[bb	chr19:39949543-39949789(+)$1	246	110	122	19.9361
"""bb!!ccc""	chr11:6623077-6623370(-)$1	293	34	46	20.7872
::::::::::::	chr17:7793859-7794161(+)$1	302	147	159	24.0851
ppppbb22dddd	chr11:85375183-85375482(-)$1	299	230	242	21.4255
:::::::::BB{	chr6:159191695-159191929(-)$1	234	20	32	20.5744
ddd]dddd::::	chr9:104316962-104317226(+)$1	264	56	68	20.7872
hhhFFFFFF:::	chr12:76442912-76443131(-)$1	219	109	121	24.6170
DD}FFFFFF:EE	chr7:44524668-44524977(-)$1	309	174	186	21.2127
2a::::::::::	chr11:118888610-118888864(-)$1	254	114	126	24.2978
nnnnbb::::gg	chr20:17640718-17641026(-)$1	308	46	58	24.6170
=:::::::::::	chr11:16776314-16776566(+)$1	252	210	222	20.8936
^^^^^^^^^^^^	chr11:57094075-57094338(-)$1	263	139	151	20.4680
?DDDD@@@@@@@	chr10:8007462-8007790(+)$1	328	127	139	24.0851
f:::::BB{DDD	chr20:20024035-20024322(-)$1	287	171	183	21.1063
ffff::::::::	chr16:3785932-3786230(-)$1	298	133	145	24.5106
:::::::::ddd	chr1:32374231-32374598(-)$1	367	35	47	20.8936
::::::::::::	chr4:174253164-174253374(-)$1	210	95	107	25.3617
EKKDDDD:::::	chr2:232327815-232328127(-)$1	312	183	195	24.1914
}DDDDZZZCCC}	chr1:151239548-151239802(+)$1	254	239	251	19.6170
GGGGGOOOOOOH	chr15:66727350-66727642(+)$1	292	100	112	20.1489
cbb>>>>>>>>>	chr19:10262004-10262272(-)$1	268	143	155	25.3617
ttteeeee:::F	chr12:53427713-53427918(+)$1	205	18	30	23.8723
EEEMMMMEEEEE	chr12:76442879-76443089(-)$1	210	67	79	24.6170
BB::::::::::	chr11:118888566-118888770(-)$1	204	20	32	24.2978
^^^^^^^^^^^^	chr11:71821036-71821372(-)$1	336	112	124	21.2127
^^^^^^^^^^^^	chr11:3023707-3023932(-)$1	225	112	124	24.2978
::::::::::::	chr17:61901085-61901413(-)$1	328	100	112	21.5319
UUFFFFFFKKFF	chr15:78841118-78841396(+)$1	278	101	113	21.4255
VVVVVVVDDDD{	chr15:91524889-91525165(-)$1	276	24	36	20.7872
bb]ccc::::::	chr1:23637192-23637465(-)$1	273	114	126	20.6808
cc[ffffff[cc	chr16:23570812-23571102(+)$1	290	153	165	20.7872
::::::::::::	chr19:51848383-51848732(-)$1	349	104	116	28.4468
::JJJJJJJJJJ	chr15:66791644-66791857(-)$1	213	0	12	20.0425
IIIIIIIII}FF	chr15:49437099-49437376(-)$1	277	172	184	20.4680
bb]dddd22bb7	chr17:65849954-65850247(+)$1	293	144	156	21.5319
bb]ggggggg::	chr1:93825949-93826208(+)$1	259	222	234	21.1063
5555dddd::::	chr1:61553856-61554142(+)$1	286	83	95	24.5106
eeCCC{FFFFFF	chr14:102549270-102549512(-)$1	242	42	54	20.4680
fff::::ddddc	chr9:35057309-35057628(-)$1	319	106	118	20.2553

#DB
.)))........	chr15:44085805-44086063(+)$1	1	119	131	19.8297
............	chr6:44219780-44220024(+)$1	1	138	150	28.4468
............	chr19:11106934-11107156(+)$1	1	96	108	24.6170
)))))).)))).	chr11:57093767-57094040(-)$1	1	93	105	25.1489
.)).))))))..	chrX:64958286-64958506(+)$1	1	155	167	24.6170
((((.(((((.(	chr17:16022653-16022900(-)$1	1	135	147	19.9361
......))....	chr11:65830997-65831229(+)$1	1	172	184	25.3617
((((((((....	chr2:102472476-102472701(+)$1	1	18	30	24.5106
(..(((.((.((	chr19:39949543-39949789(+)$1	1	110	122	19.9361
...((..(((..	chr11:6623077-6623370(-)$1	1	34	46	20.7872
............	chr17:7793859-7794161(+)$1	1	147	159	24.0851
....))..))))	chr11:85375183-85375482(-)$1	1	230	242	21.4255
.........((.	chr6:159191695-159191929(-)$1	1	20	32	20.5744
))).))))....	chr9:104316962-104317226(+)$1	1	56	68	20.7872
)))((((((...	chr12:76442912-76443131(-)$1	1	109	121	24.6170
)).)))))).((	chr7:44524668-44524977(-)$1	1	174	186	21.2127
.)..........	chr11:118888610-118888864(-)$1	1	114	126	24.2978
....))....((	chr20:17640718-17641026(-)$1	1	46	58	24.6170
)...........	chr11:16776314-16776566(+)$1	1	210	222	20.8936
............	chr11:57094075-57094338(-)$1	1	139	151	20.4680
.)))).......	chr10:8007462-8007790(+)$1	1	127	139	24.0851
).....((.(((	chr20:20024035-20024322(-)$1	1	171	183	21.1063
))))........	chr16:3785932-3786230(-)$1	1	133	145	24.5106
.........(((	chr1:32374231-32374598(-)$1	1	35	47	20.8936
............	chr4:174253164-174253374(-)$1	1	95	107	25.3617
(..((((.....	chr2:232327815-232328127(-)$1	1	183	195	24.1914
.))))...))).	chr1:151239548-151239802(+)$1	1	239	251	19.6170
(((((......(	chr15:66727350-66727642(+)$1	1	100	112	20.1489
))).........	chr19:10262004-10262272(-)$1	1	143	155	25.3617
...)))))...(	chr12:53427713-53427918(+)$1	1	18	30	23.8723
(((....(((((	chr12:76442879-76443089(-)$1	1	67	79	24.6170
((..........	chr11:118888566-118888770(-)$1	1	20	32	24.2978
............	chr11:71821036-71821372(-)$1	1	112	124	21.2127
............	chr11:3023707-3023932(-)$1	1	112	124	24.2978
............	chr17:61901085-61901413(-)$1	1	100	112	21.5319
..((((((..((	chr15:78841118-78841396(+)$1	1	101	113	21.4255
.......((((.	chr15:91524889-91525165(-)$1	1	24	36	20.7872
)).)))......	chr1:23637192-23637465(-)$1	1	114	126	20.6808
((.((((((.((	chr16:23570812-23571102(+)$1	1	153	165	20.7872
............	chr19:51848383-51848732(-)$1	1	104	116	28.4468
..((((((((((	chr15:66791644-66791857(-)$1	1	0	12	20.0425
))))))))).))	chr15:49437099-49437376(-)$1	1	172	184	20.4680
)).))))..)).	chr17:65849954-65850247(+)$1	1	144	156	21.5319
)).)))))))..	chr1:93825949-93826208(+)$1	1	222	234	21.1063
....))))....	chr1:61553856-61554142(+)$1	1	83	95	24.5106
))(((.((((((	chr14:102549270-102549512(-)$1	1	42	54	20.4680
)))....(((((	chr9:35057309-35057628(-)$1	1	106	118	20.2553

#PSSM
A : 0.61	a : 0.12	G : 0.10	U : 0.08	C : 0.02	g : 0.02	c : 0.02	
G : 0.70	g : 0.17	A : 0.08	C : 0.04	
A : 0.76	a : 0.14	C : 0.04	G : 0.02	g : 0.02	
A : 0.76	a : 0.10	G : 0.06	g : 0.06	
G : 0.72	g : 0.12	A : 0.06	C : 0.04	a : 0.02	c : 0.02	
A : 0.76	a : 0.17	G : 0.02	C : 0.02	U : 0.02	
A : 0.74	a : 0.14	G : 0.06	U : 0.02	u : 0.02	
G : 0.72	g : 0.14	A : 0.08	a : 0.02	C : 0.02	
A : 0.70	a : 0.17	G : 0.10	C : 0.02	
A : 0.72	a : 0.14	U : 0.06	G : 0.04	g : 0.02	
G : 0.78	g : 0.17	A : 0.02	C : 0.02	
A : 0.65	a : 0.17	G : 0.08	U : 0.06	C : 0.02	

#score	1061.7872340425536
#seq	47
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_transcript_m3_run2.nuc.txt

#NT
ggggaag	chr11:43708885-43709155(+)$1	270	149	156	13.6666
GGGGAGG	chr2:11768002-11768293(+)$1	291	85	92	17.8333
GGUGAGG	chr1:212926376-212926650(-)$1	274	117	124	14.4166
GGGGAGG	chr11:14520831-14521077(-)$1	246	82	89	17.8333
GGGGUGG	chr19:940316-940617(+)$1	301	95	102	14.0000
ggugagg	chr2:241565800-241566113(+)$1	313	17	24	14.4166
GGGGAAG	chr9:38032498-38032790(-)$1	292	63	70	13.6666
GGGgagg	chr16:2809934-2810258(+)$1	324	6	13	17.8333
ggggagg	chr2:20550323-20550588(-)$1	265	67	74	17.8333
GGGGUGG	chr17:55608246-55608519(+)$1	273	86	93	14.0000
GGAGAGG	chr7:47406679-47406973(-)$1	294	173	180	14.0000
GGGGAGG	chr17:75423121-75423382(+)$1	261	88	95	17.8333
ggggaag	chr13:75982027-75982375(-)$1	348	105	112	13.6666
ugggagg	chr19:35552995-35553278(+)$1	283	106	113	14.6666
GGGGAGG	chr22:50831872-50832192(+)$1	320	143	150	17.8333
GGUGAGG	chr7:47393158-47393449(-)$1	291	42	49	14.4166
GGUGAGG	chr2:153255885-153256126(+)$1	241	51	58	14.4166
ugggagg	chr16:89477764-89478075(-)$1	311	6	13	14.6666
ggggaag	chr22:29414199-29414456(+)$1	257	104	111	13.6666
ugggagg	chr2:153206424-153206681(+)$1	257	97	104	14.6666
AGGGAGG	chr11:65194763-65194973(+)$1	210	21	28	14.7500
GGGGAGG	chr6:31368520-31368805(+)$1	285	105	112	17.8333
GGUGAGG	chr17:34881805-34882093(-)$1	288	65	72	14.4166
GGGGAGG	chr17:75423182-75423438(+)$1	256	27	34	17.8333
GGGGAGG	chr2:120190657-120190935(+)$1	278	124	131	17.8333
UGGGAGG	chr17:80546219-80546532(+)$1	313	22	29	14.6666
UGGGAGG	chr4:184067865-184068165(+)$1	300	189	196	14.6666
GGUGAGG	chr19:34876270-34876526(+)$1	256	45	52	14.4166
AGGGAGG	chr6:11222352-11222626(-)$1	274	110	117	14.7500
GGGGUGG	chr18:55712826-55713091(+)$1	265	43	50	14.0000
ggggagg	chr6:4794670-4794972(+)$1	302	146	153	17.8333
GGGGUGG	chr1:214203776-214204060(+)$1	284	4	11	14.0000
UGGGAGG	chr9:116822991-116823276(-)$1	285	136	143	14.6666
GGGGAGG	chr16:31199360-31199584(+)$1	224	23	30	17.8333
ggggugg	chr17:75464942-75465213(+)$1	271	107	114	14.0000
GGGGAGG	chr2:118846284-118846564(+)$1	280	52	59	17.8333
GGGGAGG	chr2:177134572-177134868(+)$1	296	105	112	17.8333
ggggagg	chr5:154149443-154149713(+)$1	270	240	247	17.8333
AGGGAGG	chr6:7546105-7546404(+)$1	299	37	44	14.7500
Ggugagg	chr11:129695169-129695446(+)$1	277	14	21	14.4166
ggagagg	chr2:101749673-101749991(-)$1	318	139	146	14.0000
ggggagg	chr1:893811-894102(-)$1	291	97	104	17.8333
GGGGAAG	chr19:6708914-6709178(-)$1	264	66	73	13.6666
ggggagg	chr21:47563054-47563327(-)$1	273	39	46	17.8333
GGGGUGG	chr19:56147574-56147853(+)$1	279	95	102	14.0000
ggggagg	chr12:123464008-123464284(+)$1	276	97	104	17.8333
GGGGAGG	chr17:70539051-70539332(-)$1	281	5	12	17.8333
agggagg	chr3:148898828-148899087(-)$1	259	125	132	14.7500
agggagg	chrX:20246463-20246746(-)$1	283	147	154	14.7500
AGGGAGG	chr2:242290489-242290757(+)$1	268	60	67	14.7500
AGGGAGG	chr2:242753352-242753634(+)$1	282	108	115	14.7500
GGGGAGG	chr6:161490759-161491029(+)$1	270	67	74	17.8333
GGGGUGG	chr2:134901104-134901367(+)$1	263	93	100	14.0000
GGGGAGG	chr20:34252051-34252300(-)$1	249	116	123	17.8333
GGGGAGG	chr16:31199226-31199464(+)$1	238	157	164	17.8333
ugggagg	chr8:11694531-11694806(+)$1	275	111	118	14.6666
GGUGAGG	chr6:52249087-52249396(+)$1	309	39	46	14.4166
AGGGAGG	chr10:77472108-77472371(+)$1	263	64	71	14.7500
GGAGAGG	chr17:77966395-77966674(-)$1	279	139	146	14.0000

#otherMatches

#Struct PSSM
$$bb!!c	chr19:57346291-57346576(-)$1	285	25	32	17.8333
nnnnndd	chr11:43708885-43709155(+)$1	270	149	156	13.6666
CCCMMMM	chr2:11768002-11768293(+)$1	291	85	92	17.8333
d]agggg	chr1:212926376-212926650(-)$1	274	117	124	14.4166
b]dddd]	chr11:14520831-14521077(-)$1	246	82	89	17.8333
eee::dd	chr19:940316-940617(+)$1	301	95	102	14.0000
FFFffff	chr2:241565800-241566113(+)$1	313	17	24	14.4166
eeeeepp	chr9:38032498-38032790(-)$1	292	63	70	13.6666
IIIIIII	chr16:2809934-2810258(+)$1	324	6	13	17.8333
ee]dddd	chr2:20550323-20550588(-)$1	265	67	74	17.8333
HH{EEEE	chr17:55608246-55608519(+)$1	273	86	93	14.0000
2dddd]c	chr7:47406679-47406973(-)$1	294	173	180	14.0000
:eeeeeo	chr17:75423121-75423382(+)$1	261	88	95	17.8333
FFFFFF{	chr13:75982027-75982375(-)$1	348	105	112	13.6666
CNNNNNC	chr19:35552995-35553278(+)$1	283	106	113	14.6666
eee22cc	chr22:50831872-50832192(+)$1	320	143	150	17.8333
ddooooo	chr7:47393158-47393449(-)$1	291	42	49	14.4166
tttdddd	chr2:153255885-153256126(+)$1	241	51	58	14.4166
hhhh[a!	chr16:89477764-89478075(-)$1	311	6	13	14.6666
DDDNNNN	chr22:29414199-29414456(+)$1	257	104	111	13.6666
ffffffe	chr2:153206424-153206681(+)$1	257	97	104	14.6666
GGGG{CC	chr11:65194763-65194973(+)$1	210	21	28	14.7500
DBBKKII	chr6:31368520-31368805(+)$1	285	105	112	17.8333
A{EEEEE	chr17:34881805-34882093(-)$1	288	65	72	14.4166
"eeeeeo	chr17:75423182-75423438(+)$1	256	27	34	17.8333
dd"""dd	chr2:120190657-120190935(+)$1	278	124	131	17.8333
FFFFFFM	chr17:80546219-80546532(+)$1	313	22	29	14.6666
::ggggg	chr4:184067865-184068165(+)$1	300	189	196	14.6666
nnnnccc	chr19:34876270-34876526(+)$1	256	45	52	14.4166
ffff[ff	chr6:11222352-11222626(-)$1	274	110	117	14.7500
IIIII{D	chr18:55712826-55713091(+)$1	265	43	50	14.0000
bbooooo	chr6:4794670-4794972(+)$1	302	146	153	17.8333
FFFF{DD	chr1:214203776-214204060(+)$1	284	4	11	14.0000
eeppppp	chr9:116822991-116823276(-)$1	285	136	143	14.6666
ffiiiii	chr16:31199360-31199584(+)$1	224	23	30	17.8333
]dddd:g	chr17:75464942-75465213(+)$1	271	107	114	14.0000
7777777	chr2:118846284-118846564(+)$1	280	52	59	17.8333
DDDD}HH	chr2:177134572-177134868(+)$1	296	105	112	17.8333
BBYYFFF	chr5:154149443-154149713(+)$1	270	240	247	17.8333
ggggggg	chr6:7546105-7546404(+)$1	299	37	44	14.7500
mbb4444	chr11:129695169-129695446(+)$1	277	14	21	14.4166
EEEEYYE	chr2:101749673-101749991(-)$1	318	139	146	14.0000
EEEYYEE	chr1:893811-894102(-)$1	291	97	104	17.8333
22eeeee	chr19:6708914-6709178(-)$1	264	66	73	13.6666
BBMMMMA	chr21:47563054-47563327(-)$1	273	39	46	17.8333
EE{CCC:	chr19:56147574-56147853(+)$1	279	95	102	14.0000
BBBB{AC	chr12:123464008-123464284(+)$1	276	97	104	17.8333
MMMEEEE	chr17:70539051-70539332(-)$1	281	5	12	17.8333
cccnnnn	chr3:148898828-148899087(-)$1	259	125	132	14.7500
eeee]a]	chrX:20246463-20246746(-)$1	283	147	154	14.7500
''eeeee	chr2:242290489-242290757(+)$1	268	60	67	14.7500
dd"""bb	chr2:242753352-242753634(+)$1	282	108	115	14.7500
LEEEEE{	chr6:161490759-161491029(+)$1	270	67	74	17.8333
cc]bb::	chr2:134901104-134901367(+)$1	263	93	100	14.0000
:eeeee"	chr20:34252051-34252300(-)$1	249	116	123	17.8333
dddhhhh	chr16:31199226-31199464(+)$1	238	157	164	17.8333
DDMMMMB	chr8:11694531-11694806(+)$1	275	111	118	14.6666
F{FFFFF	chr6:52249087-52249396(+)$1	309	39	46	14.4166
qqccc]d	chr10:77472108-77472371(+)$1	263	64	71	14.7500
ddd]a33	chr17:77966395-77966674(-)$1	279	139	146	14.0000

#DB
..((..(	chr19:57346291-57346576(-)$1	1	25	32	17.8333
.....))	chr11:43708885-43709155(+)$1	1	149	156	13.6666
(((....	chr2:11768002-11768293(+)$1	1	85	92	17.8333
).)((((	chr1:212926376-212926650(-)$1	1	117	124	14.4166
).)))).	chr11:14520831-14521077(-)$1	1	82	89	17.8333
)))..((	chr19:940316-940617(+)$1	1	95	102	14.0000
(((((((	chr2:241565800-241566113(+)$1	1	17	24	14.4166
(((((..	chr9:38032498-38032790(-)$1	1	63	70	13.6666
(((((((	chr16:2809934-2810258(+)$1	1	6	13	17.8333
)).))))	chr2:20550323-20550588(-)$1	1	67	74	17.8333
((.((((	chr17:55608246-55608519(+)$1	1	86	93	14.0000
.)))).)	chr7:47406679-47406973(-)$1	1	173	180	14.0000
.(((((.	chr17:75423121-75423382(+)$1	1	88	95	17.8333
((((((.	chr13:75982027-75982375(-)$1	1	105	112	13.6666
(.....(	chr19:35552995-35553278(+)$1	1	106	113	14.6666
)))..))	chr22:50831872-50832192(+)$1	1	143	150	17.8333
((.....	chr7:47393158-47393449(-)$1	1	42	49	14.4166
...))))	chr2:153255885-153256126(+)$1	1	51	58	14.4166
((((.(.	chr16:89477764-89478075(-)$1	1	6	13	14.6666
(((....	chr22:29414199-29414456(+)$1	1	104	111	13.6666
)))))))	chr2:153206424-153206681(+)$1	1	97	104	14.6666
((((.((	chr11:65194763-65194973(+)$1	1	21	28	14.7500
(((..((	chr6:31368520-31368805(+)$1	1	105	112	17.8333
(.(((((	chr17:34881805-34882093(-)$1	1	65	72	14.4166
.(((((.	chr17:75423182-75423438(+)$1	1	27	34	17.8333
((...((	chr2:120190657-120190935(+)$1	1	124	131	17.8333
((((((.	chr17:80546219-80546532(+)$1	1	22	29	14.6666
..(((((	chr4:184067865-184068165(+)$1	1	189	196	14.6666
....)))	chr19:34876270-34876526(+)$1	1	45	52	14.4166
((((.((	chr6:11222352-11222626(-)$1	1	110	117	14.7500
(((((.(	chr18:55712826-55713091(+)$1	1	43	50	14.0000
((.....	chr6:4794670-4794972(+)$1	1	146	153	17.8333
((((.((	chr1:214203776-214204060(+)$1	1	4	11	14.0000
((.....	chr9:116822991-116823276(-)$1	1	136	143	14.6666
))(((((	chr16:31199360-31199584(+)$1	1	23	30	17.8333
.)))).(	chr17:75464942-75465213(+)$1	1	107	114	14.0000
.......	chr2:118846284-118846564(+)$1	1	52	59	17.8333
)))).))	chr2:177134572-177134868(+)$1	1	105	112	17.8333
))..)))	chr5:154149443-154149713(+)$1	1	240	247	17.8333
)))))))	chr6:7546105-7546404(+)$1	1	37	44	14.7500
.))....	chr11:129695169-129695446(+)$1	1	14	21	14.4166
))))..)	chr2:101749673-101749991(-)$1	1	139	146	14.0000
)))..))	chr1:893811-894102(-)$1	1	97	104	17.8333
..)))))	chr19:6708914-6709178(-)$1	1	66	73	13.6666
((....(	chr21:47563054-47563327(-)$1	1	39	46	17.8333
((.(((.	chr19:56147574-56147853(+)$1	1	95	102	14.0000
((((.((	chr12:123464008-123464284(+)$1	1	97	104	17.8333
...((((	chr17:70539051-70539332(-)$1	1	5	12	17.8333
(((....	chr3:148898828-148899087(-)$1	1	125	132	14.7500
)))).).	chrX:20246463-20246746(-)$1	1	147	154	14.7500
..(((((	chr2:242290489-242290757(+)$1	1	60	67	14.7500
((...((	chr2:242753352-242753634(+)$1	1	108	115	14.7500
.(((((.	chr6:161490759-161491029(+)$1	1	67	74	17.8333
)).))..	chr2:134901104-134901367(+)$1	1	93	100	14.0000
.(((((.	chr20:34252051-34252300(-)$1	1	116	123	17.8333
)))((((	chr16:31199226-31199464(+)$1	1	157	164	17.8333
((....(	chr8:11694531-11694806(+)$1	1	111	118	14.6666
(.(((((	chr6:52249087-52249396(+)$1	1	39	46	14.4166
..))).)	chr10:77472108-77472371(+)$1	1	64	71	14.7500
))).)..	chr17:77966395-77966674(-)$1	1	139	146	14.0000

#PSSM
G : 0.53	g : 0.21	A : 0.09	u : 0.06	U : 0.05	a : 0.03	
G : 0.66	g : 0.33	
G : 0.53	g : 0.28	U : 0.09	u : 0.03	A : 0.03	a : 0.01	
G : 0.65	g : 0.35	
A : 0.55	a : 0.33	U : 0.09	u : 0.01	
G : 0.61	g : 0.30	a : 0.05	A : 0.03	
G : 0.65	g : 0.35	

#score	936.6666666666672
#seq	60
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_CDS_m2_run1.nuc.txt

#NT
AGGA	chr19:13064945-13065210(-)$1	265	1	5	11.9999
AGGA	chr10:103546060-103546381(-)$1	321	104	108	11.9999
AGGA	chr22:22892403-22892615(-)$1	212	65	69	11.9999
AGGA	chr1:203819539-203819775(+)$1	236	17	21	11.9999
AGGA	chr16:67862330-67862582(-)$1	252	41	45	11.9999
AGGA	chr11:57509565-57509820(+)$1	255	190	194	11.9999
AGGA	chrX:55035603-55035877(-)$1	274	143	147	11.9999
AGGA	chr17:26904926-26905142(-)$1	216	5	9	11.9999
AGGA	chr12:57106496-57106723(-)$1	227	56	60	11.9999
AGGA	chrM:11754-11977(+)$1	223	43	47	11.9999
AGGA	chr22:22892047-22892279(-)$1	232	17	21	11.9999
AGGA	chr1:19421971-19422247(-)$1	276	212	216	11.9999
AGGA	chr4:17838677-17838917(+)$1	240	31	35	11.9999
AGGA	chr17:1680579-1680894(+)$1	315	0	4	11.9999
AGGA	chr17:41154588-41154809(+)$1	221	0	4	11.9999
AGGA	chr6:31498582-31498804(-)$1	222	189	193	11.9999
AGGA	chr1:205052518-205052852(-)$1	334	93	97	11.9999
AGGA	chr2:166801931-166802242(-)$1	311	78	82	11.9999
AGGA	chr3:9986082-9986321(+)$1	239	198	202	11.9999
AGGA	chrM:14250-14483(-)$1	233	35	39	11.9999
AGGA	chr6:170844132-170844415(-)$1	283	79	83	11.9999
AGGA	chr17:29220503-29220778(+)$1	275	12	16	11.9999
AGGA	chr6:148058416-148058739(+)$1	323	123	127	11.9999
AGGA	chr16:778853-779104(+)$1	251	165	169	11.9999
AGGA	chr11:118279657-118279919(+)$1	262	55	59	11.9999
AGGA	chr22:22892389-22892603(-)$1	214	53	57	11.9999
AGGA	chrM:14225-14450(-)$1	225	2	6	11.9999
AGGA	chr17:80445917-80446185(+)$1	268	0	4	11.9999
AGGA	chr22:29191316-29191625(-)$1	309	12	16	11.9999
AGGA	chrM:14362-14585(-)$1	223	137	141	11.9999
AGGA	chr16:31202619-31202840(+)$1	221	15	19	11.9999
AGGA	chr2:198352525-198352778(-)$1	253	85	89	11.9999
AGGA	chr1:226032902-226033157(-)$1	255	131	135	11.9999
AGGA	chr5:139939907-139940187(-)$1	280	114	118	11.9999
AGGA	chr11:66372884-66373132(+)$1	248	200	204	11.9999
AGGA	chr11:65359645-65359913(+)$1	268	36	40	11.9999
AGGA	chr4:159631677-159631924(-)$1	247	201	205	11.9999
AGGA	chr1:153617492-153617770(+)$1	278	143	147	11.9999
AGGA	chr11:294563-294792(+)$1	229	81	85	11.9999
AGGA	chr4:39456382-39456595(-)$1	213	80	84	11.9999
AGGA	chr1:8922854-8923106(-)$1	252	164	168	11.9999
AGGA	chr22:38882147-38882394(-)$1	247	6	10	11.9999
AGGA	chr17:43227213-43227473(+)$1	260	83	87	11.9999
AGGA	chr22:22049571-22049805(+)$1	234	60	64	11.9999
AGGA	chr3:10140357-10140599(+)$1	242	74	78	11.9999
AGGA	chr1:52254820-52255067(-)$1	247	14	18	11.9999
AGGA	chr17:29221566-29221825(+)$1	259	28	32	11.9999
agga	chr19:49611424-49611708(+)$1	284	157	161	11.9999
AGGA	chr11:292902-293168(+)$1	266	74	78	11.9999
AGGA	chr18:43666027-43666314(-)$1	287	225	229	11.9999
AGGA	chr22:22892385-22892589(-)$1	204	39	43	11.9999
AGGA	chr19:1010677-1010916(-)$1	239	86	90	11.9999
AGGA	chrM:10166-10427(+)$1	261	219	223	11.9999
AGGA	chr1:203821357-203821609(+)$1	252	22	26	11.9999
AGGA	chr12:121746142-121746434(-)$1	292	66	70	11.9999
AGGA	chr5:179041819-179042047(-)$1	228	94	98	11.9999
AGGA	chrM:14159-14363(-)$1	204	51	55	11.9999
AGGA	chr5:94800147-94800438(-)$1	291	148	152	11.9999
AGGA	chr3:141644276-141644508(+)$1	232	208	212	11.9999
AGGA	chr16:31202319-31202532(+)$1	213	162	166	11.9999
AGGA	chrX:48681491-48681742(+)$1	251	37	41	11.9999
AGGA	chr14:51371861-51372269(-)$1	408	388	392	11.9999
AGGA	chr11:66372932-66373163(+)$1	231	152	156	11.9999
AGGA	chr6:30893802-30894046(+)$1	244	35	39	11.9999
AGGA	chrX:19376960-19377243(+)$1	283	96	100	11.9999
AGGA	chr6:137519281-137519589(-)$1	308	274	278	11.9999
AGGA	chr12:120634433-120634691(-)$1	258	63	67	11.9999
AGGA	chr12:57106469-57106690(-)$1	221	23	27	11.9999
AGGA	chrM:15579-15863(+)$1	284	31	35	11.9999
AGGA	chr12:57106188-57106437(-)$1	249	99	103	11.9999
AGGA	chrM:15699-15957(+)$1	258	64	68	11.9999
agga	chr14:23528296-23528626(-)$1	330	1	5	11.9999
AGGA	chr1:158581049-158581273(-)$1	224	37	41	11.9999
AGGA	chr5:179041847-179042061(-)$1	214	108	112	11.9999
AGGA	chr5:1815880-1816178(+)$1	298	82	86	11.9999
AGGA	chr6:33382627-33382933(+)$1	306	88	92	11.9999
AGGA	chr18:9134091-9134365(+)$1	274	90	94	11.9999
AGGA	chr5:179041762-179042019(-)$1	257	66	70	11.9999
AGGA	chr5:167946001-167946269(+)$1	268	43	47	11.9999

#otherMatches

#Struct PSSM
JJJJ	chr13:27830337-27830571(+)$1	234	69	73	11.9999
GGGG	chr19:13064945-13065210(-)$1	265	1	5	11.9999
eeem	chr10:103546060-103546381(-)$1	321	104	108	11.9999
ccco	chr22:22892403-22892615(-)$1	212	65	69	11.9999
!!dd	chr1:203819539-203819775(+)$1	236	17	21	11.9999
ssss	chr16:67862330-67862582(-)$1	252	41	45	11.9999
mmmb	chr11:57509565-57509820(+)$1	255	190	194	11.9999
dddn	chrX:55035603-55035877(-)$1	274	143	147	11.9999
GGG:	chr17:26904926-26905142(-)$1	216	5	9	11.9999
ffff	chr12:57106496-57106723(-)$1	227	56	60	11.9999
dddd	chrM:11754-11977(+)$1	223	43	47	11.9999
Gbb!	chr22:22892047-22892279(-)$1	232	17	21	11.9999
444g	chr1:19421971-19422247(-)$1	276	212	216	11.9999
wwwc	chr4:17838677-17838917(+)$1	240	31	35	11.9999
:EEE	chr17:1680579-1680894(+)$1	315	0	4	11.9999
:hhh	chr17:41154588-41154809(+)$1	221	0	4	11.9999
JJJ|	chr6:31498582-31498804(-)$1	222	189	193	11.9999
mmmm	chr1:205052518-205052852(-)$1	334	93	97	11.9999
MMMM	chr2:166801931-166802242(-)$1	311	78	82	11.9999
FF}C	chr3:9986082-9986321(+)$1	239	198	202	11.9999
bb22	chrM:14250-14483(-)$1	233	35	39	11.9999
!bb#	chr6:170844132-170844415(-)$1	283	79	83	11.9999
EEEE	chr17:29220503-29220778(+)$1	275	12	16	11.9999
:CCC	chr6:148058416-148058739(+)$1	323	123	127	11.9999
ddd#	chr16:778853-779104(+)$1	251	165	169	11.9999
gggg	chr11:118279657-118279919(+)$1	262	55	59	11.9999
ccco	chr22:22892389-22892603(-)$1	214	53	57	11.9999
:EEE	chrM:14225-14450(-)$1	225	2	6	11.9999
:FFF	chr17:80445917-80446185(+)$1	268	0	4	11.9999
e[bb	chr22:29191316-29191625(-)$1	309	12	16	11.9999
!!bb	chrM:14362-14585(-)$1	223	137	141	11.9999
A{GG	chr16:31202619-31202840(+)$1	221	15	19	11.9999
[ccc	chr2:198352525-198352778(-)$1	253	85	89	11.9999
ccmm	chr1:226032902-226033157(-)$1	255	131	135	11.9999
[bb#	chr5:139939907-139940187(-)$1	280	114	118	11.9999
GGGG	chr11:66372884-66373132(+)$1	248	200	204	11.9999
]hhh	chr11:65359645-65359913(+)$1	268	36	40	11.9999
|EEE	chr4:159631677-159631924(-)$1	247	201	205	11.9999
eee]	chr1:153617492-153617770(+)$1	278	143	147	11.9999
ddcc	chr11:294563-294792(+)$1	229	81	85	11.9999
eee:	chr4:39456382-39456595(-)$1	213	80	84	11.9999
}DDD	chr1:8922854-8923106(-)$1	252	164	168	11.9999
:::H	chr22:38882147-38882394(-)$1	247	6	10	11.9999
]a22	chr17:43227213-43227473(+)$1	260	83	87	11.9999
====	chr22:22049571-22049805(+)$1	234	60	64	11.9999
:EEE	chr3:10140357-10140599(+)$1	242	74	78	11.9999
eeee	chr1:52254820-52255067(-)$1	247	14	18	11.9999
BBMM	chr17:29221566-29221825(+)$1	259	28	32	11.9999
333b	chr19:49611424-49611708(+)$1	284	157	161	11.9999
++++	chr11:292902-293168(+)$1	266	74	78	11.9999
hhhh	chr18:43666027-43666314(-)$1	287	225	229	11.9999
ccco	chr22:22892385-22892589(-)$1	204	39	43	11.9999
nnnn	chr19:1010677-1010916(-)$1	239	86	90	11.9999
/DDD	chrM:10166-10427(+)$1	261	219	223	11.9999
eeee	chr1:203821357-203821609(+)$1	252	22	26	11.9999
fffd	chr12:121746142-121746434(-)$1	292	66	70	11.9999
HHHH	chr5:179041819-179042047(-)$1	228	94	98	11.9999
::::	chrM:14159-14363(-)$1	204	51	55	11.9999
zzzz	chr5:94800147-94800438(-)$1	291	148	152	11.9999
d[bb	chr3:141644276-141644508(+)$1	232	208	212	11.9999
tttt	chr16:31202319-31202532(+)$1	213	162	166	11.9999
CC{A	chrX:48681491-48681742(+)$1	251	37	41	11.9999
EEE:	chr14:51371861-51372269(-)$1	408	388	392	11.9999
mbb]	chr11:66372932-66373163(+)$1	231	152	156	11.9999
gggg	chr6:30893802-30894046(+)$1	244	35	39	11.9999
88bb	chrX:19376960-19377243(+)$1	283	96	100	11.9999
EEEY	chr6:137519281-137519589(-)$1	308	274	278	11.9999
:::G	chr12:120634433-120634691(-)$1	258	63	67	11.9999
IIII	chr12:57106469-57106690(-)$1	221	23	27	11.9999
ddd]	chrM:15579-15863(+)$1	284	31	35	11.9999
eeee	chr12:57106188-57106437(-)$1	249	99	103	11.9999
eee:	chrM:15699-15957(+)$1	258	64	68	11.9999
::::	chr14:23528296-23528626(-)$1	330	1	5	11.9999
:ccc	chr1:158581049-158581273(-)$1	224	37	41	11.9999
HHHH	chr5:179041847-179042061(-)$1	214	108	112	11.9999
gggg	chr5:1815880-1816178(+)$1	298	82	86	11.9999
rrrr	chr6:33382627-33382933(+)$1	306	88	92	11.9999
ffff	chr18:9134091-9134365(+)$1	274	90	94	11.9999
eeee	chr5:179041762-179042019(-)$1	257	66	70	11.9999
GGG{	chr5:167946001-167946269(+)$1	268	43	47	11.9999

#DB
((((	chr13:27830337-27830571(+)$1	1	69	73	11.9999
((((	chr19:13064945-13065210(-)$1	1	1	5	11.9999
(((.	chr10:103546060-103546381(-)$1	1	104	108	11.9999
(((.	chr22:22892403-22892615(-)$1	1	65	69	11.9999
..((	chr1:203819539-203819775(+)$1	1	17	21	11.9999
....	chr16:67862330-67862582(-)$1	1	41	45	11.9999
...)	chr11:57509565-57509820(+)$1	1	190	194	11.9999
(((.	chrX:55035603-55035877(-)$1	1	143	147	11.9999
(((.	chr17:26904926-26905142(-)$1	1	5	9	11.9999
((((	chr12:57106496-57106723(-)$1	1	56	60	11.9999
))))	chrM:11754-11977(+)$1	1	43	47	11.9999
(((.	chr22:22892047-22892279(-)$1	1	17	21	11.9999
...)	chr1:19421971-19422247(-)$1	1	212	216	11.9999
...)	chr4:17838677-17838917(+)$1	1	31	35	11.9999
.(((	chr17:1680579-1680894(+)$1	1	0	4	11.9999
.(((	chr17:41154588-41154809(+)$1	1	0	4	11.9999
))).	chr6:31498582-31498804(-)$1	1	189	193	11.9999
....	chr1:205052518-205052852(-)$1	1	93	97	11.9999
....	chr2:166801931-166802242(-)$1	1	78	82	11.9999
)).)	chr3:9986082-9986321(+)$1	1	198	202	11.9999
))..	chrM:14250-14483(-)$1	1	35	39	11.9999
.((.	chr6:170844132-170844415(-)$1	1	79	83	11.9999
((((	chr17:29220503-29220778(+)$1	1	12	16	11.9999
.)))	chr6:148058416-148058739(+)$1	1	123	127	11.9999
(((.	chr16:778853-779104(+)$1	1	165	169	11.9999
))))	chr11:118279657-118279919(+)$1	1	55	59	11.9999
(((.	chr22:22892389-22892603(-)$1	1	53	57	11.9999
.(((	chrM:14225-14450(-)$1	1	2	6	11.9999
.(((	chr17:80445917-80446185(+)$1	1	0	4	11.9999
(.((	chr22:29191316-29191625(-)$1	1	12	16	11.9999
..((	chrM:14362-14585(-)$1	1	137	141	11.9999
(.((	chr16:31202619-31202840(+)$1	1	15	19	11.9999
.(((	chr2:198352525-198352778(-)$1	1	85	89	11.9999
((..	chr1:226032902-226033157(-)$1	1	131	135	11.9999
.((.	chr5:139939907-139940187(-)$1	1	114	118	11.9999
))))	chr11:66372884-66373132(+)$1	1	200	204	11.9999
.)))	chr11:65359645-65359913(+)$1	1	36	40	11.9999
.)))	chr4:159631677-159631924(-)$1	1	201	205	11.9999
))).	chr1:153617492-153617770(+)$1	1	143	147	11.9999
))((	chr11:294563-294792(+)$1	1	81	85	11.9999
))).	chr4:39456382-39456595(-)$1	1	80	84	11.9999
.)))	chr1:8922854-8923106(-)$1	1	164	168	11.9999
...(	chr22:38882147-38882394(-)$1	1	6	10	11.9999
.)..	chr17:43227213-43227473(+)$1	1	83	87	11.9999
((((	chr22:22049571-22049805(+)$1	1	60	64	11.9999
.(((	chr3:10140357-10140599(+)$1	1	74	78	11.9999
((((	chr1:52254820-52255067(-)$1	1	14	18	11.9999
((..	chr17:29221566-29221825(+)$1	1	28	32	11.9999
...)	chr19:49611424-49611708(+)$1	1	157	161	11.9999
....	chr11:292902-293168(+)$1	1	74	78	11.9999
((((	chr18:43666027-43666314(-)$1	1	225	229	11.9999
(((.	chr22:22892385-22892589(-)$1	1	39	43	11.9999
....	chr19:1010677-1010916(-)$1	1	86	90	11.9999
.)))	chrM:10166-10427(+)$1	1	219	223	11.9999
((((	chr1:203821357-203821609(+)$1	1	22	26	11.9999
))))	chr12:121746142-121746434(-)$1	1	66	70	11.9999
))))	chr5:179041819-179042047(-)$1	1	94	98	11.9999
....	chrM:14159-14363(-)$1	1	51	55	11.9999
....	chr5:94800147-94800438(-)$1	1	148	152	11.9999
(.((	chr3:141644276-141644508(+)$1	1	208	212	11.9999
....	chr16:31202319-31202532(+)$1	1	162	166	11.9999
((.(	chrX:48681491-48681742(+)$1	1	37	41	11.9999
))).	chr14:51371861-51372269(-)$1	1	388	392	11.9999
.)).	chr11:66372932-66373163(+)$1	1	152	156	11.9999
((((	chr6:30893802-30894046(+)$1	1	35	39	11.9999
..))	chrX:19376960-19377243(+)$1	1	96	100	11.9999
))).	chr6:137519281-137519589(-)$1	1	274	278	11.9999
...(	chr12:120634433-120634691(-)$1	1	63	67	11.9999
((((	chr12:57106469-57106690(-)$1	1	23	27	11.9999
))).	chrM:15579-15863(+)$1	1	31	35	11.9999
))))	chr12:57106188-57106437(-)$1	1	99	103	11.9999
))).	chrM:15699-15957(+)$1	1	64	68	11.9999
....	chr14:23528296-23528626(-)$1	1	1	5	11.9999
.(((	chr1:158581049-158581273(-)$1	1	37	41	11.9999
))))	chr5:179041847-179042061(-)$1	1	108	112	11.9999
))))	chr5:1815880-1816178(+)$1	1	82	86	11.9999
....	chr6:33382627-33382933(+)$1	1	88	92	11.9999
((((	chr18:9134091-9134365(+)$1	1	90	94	11.9999
))))	chr5:179041762-179042019(-)$1	1	66	70	11.9999
(((.	chr5:167946001-167946269(+)$1	1	43	47	11.9999

#PSSM
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	

#score	959.9999999999994
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_transcript_m1_run1.nuc.txt

#NT
UGGGGUUGGUG	chr1:16477899-16478183(-)$1	284	226	237	16.6607
CGGGGUCGGGA	chr7:77166718-77166983(+)$1	265	28	39	14.6964
UGGGGUGGGGC	chr21:45734491-45734818(+)$1	327	142	153	19.2500
GGGGGUAGGGG	chr1:1242460-1242680(-)$1	220	52	63	19.2500
UGGAGUGGGGG	chr16:67236130-67236359(-)$1	229	61	72	16.7500
UGCGGUGGGGC	chr9:4850210-4850417(+)$1	207	193	204	14.6071
UGGGGGAGGGG	chr7:44836442-44836704(+)$1	262	178	189	21.4821
UGGGGAACGGG	chr12:62996785-62997002(+)$1	217	4	15	16.7500
UGGGGUCGGGG	chr1:205417478-205417698(-)$1	220	82	93	20.2321
UGGGGCUGGGA	chr7:1062844-1063119(-)$1	275	44	55	16.4821
GGGGGGAGGGG	chr7:99691007-99691247(-)$1	240	81	92	18.0000
ugggggcgggg	chr14:23770325-23770566(-)$1	241	94	105	18.9821
AGGGAUAGGGG	chr11:64658531-64658766(-)$1	235	171	182	14.7857
UAGGGAAGGGG	chr1:205417777-205418041(-)$1	264	180	191	16.2142
UGGGGCAGGUG	chr22:51165240-51165492(+)$1	252	18	29	17.1071
UGGGGUAGGCC	chr6:64283160-64283448(+)$1	288	46	57	16.4821
UGGGGGAGGAG	chr1:39457377-39457636(+)$1	259	111	122	17.4642
UAGGGAAGGGG	chr1:205417694-205417960(-)$1	266	99	110	16.2142
AGGGGUAGGGA	chrX:20284221-20284460(-)$1	239	173	184	17.2857
UGGGGCGGGGG	chr20:62370405-62370680(+)$1	275	91	102	19.6071
AGGGGUAGGGA	chrX:20284080-20284324(-)$1	244	37	48	17.2857
UGGGUUAGGGA	chr14:24904408-24904668(+)$1	260	79	90	16.1250
UGGGGUAGGGA	chr4:57845255-57845508(+)$1	253	64	75	20.6785
GGGGGUGGGGG	chr19:2805894-2806211(+)$1	317	91	102	18.0000
UGGGGGAGGGA	chr13:47127832-47128126(+)$1	294	103	114	19.4285
UGGGGGAGGGG	chr22:42297015-42297230(+)$1	215	50	61	21.4821
CGGGGUGGGGC	chr22:22006743-22007058(+)$1	315	133	144	15.7678
CGGGGUGGGGG	chr14:32547261-32547501(+)$1	240	96	107	18.0000
AGGGGUACGGG	chr1:2323495-2323811(+)$1	316	66	77	15.2321
UGGGGUGAGGU	chr22:46508540-46508795(+)$1	255	86	97	14.3392
UGGGGAAGGUG	chr16:89267252-89267476(-)$1	224	206	217	17.1071
UGGGGAGGGGC	chr16:14396140-14396364(+)$1	224	62	73	17.3750
UGGGGUGCGGA	chr19:46522370-46522671(+)$1	301	103	114	15.3214
UGGGGAAGCGG	chrX:151127155-151127382(-)$1	227	106	117	16.0357
UGGGGGAGGCA	chr22:22007323-22007649(+)$1	326	252	263	15.4107
agggguggggg	chr2:54197724-54198040(-)$1	316	60	71	18.0892
CGGGGUGGGGA	chr1:23750801-23751075(-)$1	274	81	92	15.9464
UGGGCCAGGGC	chr16:50644737-50644992(+)$1	255	1	12	14.1607
UGGGGCAGGGG	chr11:2155744-2155972(-)$1	228	78	89	20.8571
UGGGGUGGGGG	chr11:69459849-69460095(+)$1	246	93	104	21.4821
UGGGCUGGGGC	chr7:5569512-5569746(-)$1	234	67	78	14.7857
UGAGGUAGGAG	chr19:52195969-52196206(+)$1	237	76	87	14.0714
UGGGGUGGGGU	chr17:79958181-79958449(+)$1	268	8	19	18.6250
UGGGGUAGGGG	chr17:80189119-80189351(+)$1	232	186	197	22.7321
UGGGGUGAGGG	chr4:38869489-38869774(+)$1	285	133	144	17.1964
UGGGGCAGGGG	chr17:80188398-80188671(+)$1	273	237	248	20.8571
UGGGGAAcggg	chr20:62370640-62370899(+)$1	259	209	220	16.7500
UGGGGCAGGGC	chr14:24904549-24904823(+)$1	274	91	102	18.6250
UGGGGGAGGUG	chr6:20403361-20403635(+)$1	274	69	80	17.7321
UGGGGGUGGUG	chr22:22007190-22007415(+)$1	225	53	64	15.4107
gggggugggGG	chr2:242211896-242212199(-)$1	303	93	104	18.0000
UGUGGGAGGGA	chr16:88730117-88730368(+)$1	251	6	17	14.7857
UGGGGGUGGGG	chr9:96938343-96938637(+)$1	294	136	147	19.1607
UGGCGGAGGGC	chr6:32938683-32938923(+)$1	240	119	130	14.5178
UGGGGGAGGGG	chr7:25989442-25989669(-)$1	227	214	225	21.4821

#otherMatches

#Struct PSSM
eee]ccc22cc	chr1:205417229-205417461(-)$1	232	109	120	19.1607
dddddgggggg	chr1:16477899-16478183(-)$1	284	226	237	16.6607
FFFFFF:::::	chr7:77166718-77166983(+)$1	265	28	39	14.6964
neeeee]bb:E	chr21:45734491-45734818(+)$1	327	142	153	19.2500
33bbeeeee$$	chr1:1242460-1242680(-)$1	220	52	63	19.2500
!ccc[======	chr16:67236130-67236359(-)$1	229	61	72	16.7500
bb]eeeee]dd	chr9:4850210-4850417(+)$1	207	193	204	14.6071
boooooobb]d	chr7:44836442-44836704(+)$1	262	178	189	21.4821
FFKKDDDDa[f	chr12:62996785-62997002(+)$1	217	4	15	16.7500
hhhbb[ggggg	chr1:205417478-205417698(-)$1	220	82	93	20.2321
{FFFFFF:ccc	chr7:1062844-1063119(-)$1	275	44	55	16.4821
IIIIIIIIIee	chr7:99691007-99691247(-)$1	240	81	92	18.0000
d:bb!!a[ass	chr14:23770325-23770566(-)$1	241	94	105	18.9821
ooooodddd::	chr11:64658531-64658766(-)$1	235	171	182	14.7857
eeeee22ccc4	chr1:205417777-205418041(-)$1	264	180	191	16.2142
BEEEEE:::::	chr22:51165240-51165492(+)$1	252	18	29	17.1071
H{ALLLFFFFF	chr6:64283160-64283448(+)$1	288	46	57	16.4821
=nnnnn=====	chr1:39457377-39457636(+)$1	259	111	122	17.4642
eeeee22ccc4	chr1:205417694-205417960(-)$1	266	99	110	16.2142
wwwwwwwwwww	chrX:20284221-20284460(-)$1	239	173	184	17.2857
c]eeeee]ccc	chr20:62370405-62370680(+)$1	275	91	102	19.6071
{HHHHHHHH{C	chrX:20284080-20284324(-)$1	244	37	48	17.2857
33ggggggg22	chr14:24904408-24904668(+)$1	260	79	90	16.1250
fffffffffff	chr4:57845255-57845508(+)$1	253	64	75	20.6785
]bbffffffFF	chr19:2805894-2806211(+)$1	317	91	102	18.0000
ggggggg[bb[	chr13:47127832-47128126(+)$1	294	103	114	19.4285
ccc[bb!!bb!	chr22:42297015-42297230(+)$1	215	50	61	21.4821
fIIIIIIIII}	chr22:22006743-22007058(+)$1	315	133	144	15.7678
b22eeeeeccc	chr14:32547261-32547501(+)$1	240	96	107	18.0000
h]bb::::CCC	chr1:2323495-2323811(+)$1	316	66	77	15.2321
hhhhh[=====	chr22:46508540-46508795(+)$1	255	86	97	14.3392
ee]a22bb:::	chr16:89267252-89267476(-)$1	224	206	217	17.1071
==========[	chr16:14396140-14396364(+)$1	224	62	73	17.3750
ggggggg]a22	chr19:46522370-46522671(+)$1	301	103	114	15.3214
4ccc]ccc:cc	chrX:151127155-151127382(-)$1	227	106	117	16.0357
:HHHHHHHH~~	chr22:22007323-22007649(+)$1	326	252	263	15.4107
MMMMCCC{BB{	chr2:54197724-54198040(-)$1	316	60	71	18.0892
diiiiiiiii:	chr1:23750801-23751075(-)$1	274	81	92	15.9464
b[ffffff!!b	chr16:50644737-50644992(+)$1	255	1	12	14.1607
DDDD:ddddcc	chr11:2155744-2155972(-)$1	228	78	89	20.8571
IIIIIIKKFFF	chr11:69459849-69460095(+)$1	246	93	104	21.4821
doooooodddd	chr7:5569512-5569746(-)$1	234	67	78	14.7857
!ccc[======	chr19:52195969-52196206(+)$1	237	76	87	14.0714
EBB{GGGGGGG	chr17:79958181-79958449(+)$1	268	8	19	18.6250
fffff::JJJJ	chr17:80189119-80189351(+)$1	232	186	197	22.7321
ppdddd::FFF	chr4:38869489-38869774(+)$1	285	133	144	17.1964
FFFFFYYGGGG	chr17:80188398-80188671(+)$1	273	237	248	20.8571
ggggggg]eee	chr20:62370640-62370899(+)$1	259	209	220	16.7500
"""ggggggg!	chr14:24904549-24904823(+)$1	274	91	102	18.6250
hhhhhhdddd]	chr6:20403361-20403635(+)$1	274	69	80	17.7321
#hhhhhhhh[d	chr22:22007190-22007415(+)$1	225	53	64	15.4107
LEEEEELLLEE	chr2:242211896-242212199(-)$1	303	93	104	18.0000
FFFFFKKJJJJ	chr16:88730117-88730368(+)$1	251	6	17	14.7857
ppppddddbbm	chr9:96938343-96938637(+)$1	294	136	147	19.1607
dd[bb[a!!ff	chr6:32938683-32938923(+)$1	240	119	130	14.5178
mmmiiiiiiii	chr7:25989442-25989669(-)$1	227	214	225	21.4821

#DB
))).)))..))	chr1:205417229-205417461(-)$1	1	109	120	19.1607
)((((((((((	chr1:16477899-16478183(-)$1	1	226	237	16.6607
((((((.....	chr7:77166718-77166983(+)$1	1	28	39	14.6964
.))))).)).)	chr21:45734491-45734818(+)$1	1	142	153	19.2500
..))(((((..	chr1:1242460-1242680(-)$1	1	52	63	19.2500
.(((.((((((	chr16:67236130-67236359(-)$1	1	61	72	16.7500
)).))))).))	chr9:4850210-4850417(+)$1	1	193	204	14.6071
(......)).)	chr7:44836442-44836704(+)$1	1	178	189	21.4821
((..(((((.(	chr12:62996785-62997002(+)$1	1	4	15	16.7500
(((((.(((((	chr1:205417478-205417698(-)$1	1	82	93	20.2321
.((((((.(((	chr7:1062844-1063119(-)$1	1	44	55	16.4821
(((((((((((	chr7:99691007-99691247(-)$1	1	81	92	18.0000
).((..(.(..	chr14:23770325-23770566(-)$1	1	94	105	18.9821
.....))))..	chr11:64658531-64658766(-)$1	1	171	182	14.7857
)))))..))).	chr1:205417777-205418041(-)$1	1	180	191	16.2142
((((((.....	chr22:51165240-51165492(+)$1	1	18	29	17.1071
(.(...(((((	chr6:64283160-64283448(+)$1	1	46	57	16.4821
(.....)))))	chr1:39457377-39457636(+)$1	1	111	122	17.4642
)))))..))).	chr1:205417694-205417960(-)$1	1	99	110	16.2142
...........	chrX:20284221-20284460(-)$1	1	173	184	17.2857
).))))).)))	chr20:62370405-62370680(+)$1	1	91	102	19.6071
.((((((((.(	chrX:20284080-20284324(-)$1	1	37	48	17.2857
..)))))))..	chr14:24904408-24904668(+)$1	1	79	90	16.1250
)))))((((((	chr4:57845255-57845508(+)$1	1	64	75	20.6785
.))))))))((	chr19:2805894-2806211(+)$1	1	91	102	18.0000
(((((((.((.	chr13:47127832-47128126(+)$1	1	103	114	19.4285
(((.((..((.	chr22:42297015-42297230(+)$1	1	50	61	21.4821
)))))))))).	chr22:22006743-22007058(+)$1	1	133	144	15.7678
)..))))))))	chr14:32547261-32547501(+)$1	1	96	107	18.0000
).))....(((	chr1:2323495-2323811(+)$1	1	66	77	15.2321
(((((.(((((	chr22:46508540-46508795(+)$1	1	86	97	14.3392
)).)..))...	chr16:89267252-89267476(-)$1	1	206	217	17.1071
((((((((((.	chr16:14396140-14396364(+)$1	1	62	73	17.3750
))))))).)..	chr19:46522370-46522671(+)$1	1	103	114	15.3214
.))).))).((	chrX:151127155-151127382(-)$1	1	106	117	16.0357
.))))))))..	chr22:22007323-22007649(+)$1	1	252	263	15.4107
....(((.((.	chr2:54197724-54198040(-)$1	1	60	71	18.0892
)))))))))).	chr1:23750801-23751075(-)$1	1	81	92	15.9464
(.((((((..(	chr16:50644737-50644992(+)$1	1	1	12	14.1607
((((.((((((	chr11:2155744-2155972(-)$1	1	78	89	20.8571
((((((..(((	chr11:69459849-69460095(+)$1	1	93	104	21.4821
(......))))	chr7:5569512-5569746(-)$1	1	67	78	14.7857
.(((.((((((	chr19:52195969-52196206(+)$1	1	76	87	14.0714
(((.(((((((	chr17:79958181-79958449(+)$1	1	8	19	18.6250
)))))..))))	chr17:80189119-80189351(+)$1	1	186	197	22.7321
..))))..)))	chr4:38869489-38869774(+)$1	1	133	144	17.1964
)))))..))))	chr17:80188398-80188671(+)$1	1	237	248	20.8571
))))))).)))	chr20:62370640-62370899(+)$1	1	209	220	16.7500
...(((((((.	chr14:24904549-24904823(+)$1	1	91	102	18.6250
)))))))))).	chr6:20403361-20403635(+)$1	1	69	80	17.7321
.((((((((.(	chr22:22007190-22007415(+)$1	1	53	64	15.4107
.(((((...((	chr2:242211896-242212199(-)$1	1	93	104	18.0000
(((((..((((	chr16:88730117-88730368(+)$1	1	6	17	14.7857
....))))((.	chr9:96938343-96938637(+)$1	1	136	147	19.1607
((.((.(..((	chr6:32938683-32938923(+)$1	1	119	130	14.5178
...))))))))	chr7:25989442-25989669(-)$1	1	214	225	21.4821

#PSSM
U : 0.75	C : 0.07	A : 0.07	G : 0.05	u : 0.01	a : 0.01	g : 0.01	
G : 0.91	g : 0.05	A : 0.03	
G : 0.89	g : 0.05	C : 0.01	A : 0.01	U : 0.01	
G : 0.91	g : 0.05	A : 0.01	C : 0.01	
G : 0.87	g : 0.05	C : 0.03	A : 0.01	U : 0.01	
U : 0.46	G : 0.23	A : 0.12	C : 0.12	u : 0.03	g : 0.01	
A : 0.55	G : 0.26	U : 0.08	C : 0.03	g : 0.03	c : 0.01	
G : 0.83	C : 0.05	g : 0.05	A : 0.03	c : 0.01	
G : 0.91	g : 0.07	C : 0.01	
G : 0.78	U : 0.08	g : 0.05	C : 0.03	A : 0.03	
G : 0.55	A : 0.19	C : 0.16	g : 0.05	U : 0.03	

#score	980.3214285714294
#seq	56
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_UTR_m1_run2.nuc.txt

#NT
gggcggggg	chr6:15248992-15249316(+)$1	324	93	102	22.7812
GGGCGGGGG	chr2:171785686-171785997(+)$1	311	193	202	22.7812
AGGCGGGGG	chr2:62932874-62933162(+)$1	288	23	32	18.5625
GGGAGGGGG	chr20:62272050-62272329(-)$1	279	99	108	18.9531
gggcggggg	chr8:30669975-30670260(-)$1	285	98	107	22.7812
GGGCGGGGG	chr1:36689962-36690204(+)$1	242	75	84	22.7812
ggccggggg	chr19:41859495-41859822(-)$1	327	71	80	18.0937
gggcggggu	chr17:36955688-36955940(-)$1	252	38	47	18.5625
GGGCAGGGG	chr22:22275609-22275854(-)$1	245	30	39	18.4843
GGGCGGGCG	chr19:40971417-40971744(-)$1	327	238	247	18.9531
gggcagggg	chr22:50013869-50014164(-)$1	295	96	105	18.4843
GGGCGGGCG	chr11:65343564-65343816(+)$1	252	106	115	18.9531
GGGCGAGGG	chr2:198364907-198365159(+)$1	252	113	122	18.1718
GGGCGGGGG	chr16:89006209-89006438(-)$1	229	84	93	22.7812
gagcggggg	chr9:35690581-35690874(-)$1	293	36	45	18.0937
gggcggagg	chr16:69165894-69166176(-)$1	282	141	150	18.2500
GGGAGGGGG	chr22:19957687-19957933(-)$1	246	70	79	18.9531
GGGCUGGGG	chr4:763940-764193(-)$1	253	97	106	18.4843
CGGCGGGGG	chr15:80215285-80215613(-)$1	328	59	68	18.4062
GGGCCGGGG	chr4:103748422-103748702(-)$1	280	46	55	18.5625
GGGCGGGAG	chr19:18547926-18548206(-)$1	280	6	15	18.7968
gggccgggg	chr9:134269484-134269748(+)$1	264	174	183	18.5625
gggcggcgg	chr1:33820628-33821025(+)$1	397	113	122	18.4062
AGGCGGGGG	chr11:85779846-85780131(-)$1	285	80	89	18.5625
gggccgggg	chr14:73924870-73925109(-)$1	239	27	36	18.5625
GGGCGAGGG	chr18:43678035-43678305(-)$1	270	252	261	18.1718
gggcggggc	chr9:139560097-139560361(+)$1	264	52	61	18.7187
GGGAGGGGG	chr9:123631026-123631310(-)$1	284	57	66	18.9531
GGGCGGGGC	chr12:109124334-109124585(-)$1	251	12	21	18.7187
GGCCGGGGG	chr22:20133466-20133737(+)$1	271	59	68	18.0937
GGGCGGGGG	chr22:42229147-42229413(+)$1	266	29	38	22.7812
AGGCGGGGG	chr19:1273222-1273465(+)$1	243	124	133	18.5625
GGGCGGGCG	chr11:65343650-65343900(+)$1	250	20	29	18.9531
GGGCGGCGG	chr14:50359732-50359973(+)$1	241	128	137	18.4062
GGGAGGGGG	chr19:1206108-1206330(+)$1	222	20	29	18.9531
GUGCGGGGG	chr6:31696774-31697042(-)$1	268	186	195	18.1718
gggcggggA	chr2:114647624-114647920(+)$1	296	16	25	18.5625
gggcgggcg	chr1:54871820-54872061(-)$1	241	65	74	18.9531
GGGCGGGUG	chr7:116502531-116502816(+)$1	285	223	232	18.7187
gggcgggcg	chr7:77166723-77166950(+)$1	227	87	96	18.9531
GGGCGCGGG	chr3:128211823-128212055(+)$1	232	14	23	18.0937
GGGCGGGGG	chr19:12911919-12912185(-)$1	266	86	95	22.7812
GGGCGGGGC	chr1:229478056-229478381(-)$1	325	35	44	18.7187
GGGUGGGGG	chr19:46142205-46142547(-)$1	342	101	110	18.9531
GGGAGGGGG	chr6:151187488-151187747(+)$1	259	68	77	18.9531
GGGCUGGGG	chr16:70433093-70433365(-)$1	272	212	221	18.4843
GGGUGGGGG	chr11:554461-554755(+)$1	294	91	100	18.9531
GGGCGGGAG	chr3:195635692-195635953(-)$1	261	121	130	18.7968
GGGCGGGGG	chr11:46403153-46403407(+)$1	254	40	49	22.7812
GGGUGGGGG	chr17:46653889-46654097(-)$1	208	44	53	18.9531
AGGCGGGGG	chr5:154135164-154135389(+)$1	225	97	106	18.5625
GGGUGGGGG	chr19:1104628-1104901(+)$1	273	68	77	18.9531
GGGCGGGUG	chr5:154136540-154136850(+)$1	310	3	12	18.7187
GGGCGGGGA	chr11:64073603-64073832(+)$1	229	109	118	18.5625
cggcggggg	chr3:14988997-14989275(-)$1	278	219	228	18.4062
GGGCGGGGU	chr12:50135261-50135498(+)$1	237	15	24	18.5625
GGGCGGGAG	chr8:25315634-25315935(-)$1	301	95	104	18.7968
GGGUGGGGG	chr5:177022638-177022889(+)$1	251	88	97	18.9531
gggcggugg	chr19:1883461-1883723(-)$1	262	32	41	18.2500
gggcggggg	chr11:66025344-66025620(+)$1	276	149	158	22.7812
GGGCGGGGC	chr20:57607206-57607476(-)$1	270	15	24	18.7187
GGGCGGCGG	chr22:20105265-20105523(+)$1	258	228	237	18.4062
GUGCGGGGG	chr17:7210829-7211137(+)$1	308	27	36	18.1718

#otherMatches

#Struct PSSM
{CCCLLLAb	chr6:117996598-117996872(+)$1	274	124	133	22.7812
::dddd[cc	chr6:15248992-15249316(+)$1	324	93	102	22.7812
deeeeeddd	chr2:171785686-171785997(+)$1	311	193	202	22.7812
#cccbb[cc	chr2:62932874-62933162(+)$1	288	23	32	18.5625
GGGGGGFFF	chr20:62272050-62272329(-)$1	279	99	108	18.9531
gg[bb[ggg	chr8:30669975-30670260(-)$1	285	98	107	22.7812
ccggggggg	chr1:36689962-36690204(+)$1	242	75	84	22.7812
nnnnneeee	chr19:41859495-41859822(-)$1	327	71	80	18.0937
lbb]a]eee	chr17:36955688-36955940(-)$1	252	38	47	18.5625
:::::HHHH	chr22:22275609-22275854(-)$1	245	30	39	18.4843
C}CCC}FFF	chr19:40971417-40971744(-)$1	327	238	247	18.9531
CHHHHHHHH	chr22:50013869-50014164(-)$1	295	96	105	18.4843
EEE}BBYYC	chr11:65343564-65343816(+)$1	252	106	115	18.9531
ccc]ggggg	chr2:198364907-198365159(+)$1	252	113	122	18.1718
hhhhhh!!c	chr16:89006209-89006438(-)$1	229	84	93	22.7812
^^^^^^^^^	chr9:35690581-35690874(-)$1	293	36	45	18.0937
b[ccc&&&&	chr16:69165894-69166176(-)$1	282	141	150	18.2500
GGGGGbb!!	chr22:19957687-19957933(-)$1	246	70	79	18.9531
B{DDDDEEE	chr4:763940-764193(-)$1	253	97	106	18.4843
lccceeeee	chr15:80215285-80215613(-)$1	328	59	68	18.4062
ooooeeeee	chr4:103748422-103748702(-)$1	280	46	55	18.5625
CCC{EEEEE	chr19:18547926-18548206(-)$1	280	6	15	18.7968
b22cccccc	chr9:134269484-134269748(+)$1	264	174	183	18.5625
[ffffff[b	chr1:33820628-33821025(+)$1	397	113	122	18.4062
[ggggggg#	chr11:85779846-85780131(-)$1	285	80	89	18.5625
::BBCCCEE	chr14:73924870-73925109(-)$1	239	27	36	18.5625
hhhhh22ee	chr18:43678035-43678305(-)$1	270	252	261	18.1718
[cccqqqqq	chr9:139560097-139560361(+)$1	264	52	61	18.7187
ccc:::::F	chr9:123631026-123631310(-)$1	284	57	66	18.9531
dddd!!ccc	chr12:109124334-109124585(-)$1	251	12	21	18.7187
hhhhhhhh:	chr22:20133466-20133737(+)$1	271	59	68	18.0937
g:hhhhhhh	chr22:42229147-42229413(+)$1	266	29	38	22.7812
DDDDDDDA{	chr19:1273222-1273465(+)$1	243	124	133	18.5625
EEEE{CCC{	chr11:65343650-65343900(+)$1	250	20	29	18.9531
%ccc!!eee	chr14:50359732-50359973(+)$1	241	128	137	18.4062
DDDKKGGGG	chr19:1206108-1206330(+)$1	222	20	29	18.9531
b]dddd]dd	chr6:31696774-31697042(-)$1	268	186	195	18.1718
gg[ddddnn	chr2:114647624-114647920(+)$1	296	16	25	18.5625
c[dddd[cc	chr1:54871820-54872061(-)$1	241	65	74	18.9531
ffffooooo	chr7:116502531-116502816(+)$1	285	223	232	18.7187
!!ccc!!a[	chr7:77166723-77166950(+)$1	227	87	96	18.9531
CCC{A{DDD	chr3:128211823-128212055(+)$1	232	14	23	18.0937
HHHHHH{AK	chr19:12911919-12912185(-)$1	266	86	95	22.7812
!!ggggggg	chr1:229478056-229478381(-)$1	325	35	44	18.7187
JJJJJJJJJ	chr19:46142205-46142547(-)$1	342	101	110	18.9531
IIIIIIIIC	chr6:151187488-151187747(+)$1	259	68	77	18.9531
]ccceeeee	chr16:70433093-70433365(-)$1	272	212	221	18.4843
GGGJJJJJJ	chr11:554461-554755(+)$1	294	91	100	18.9531
EEEECCCBB	chr3:195635692-195635953(-)$1	261	121	130	18.7968
ff]a]aGGG	chr11:46403153-46403407(+)$1	254	40	49	22.7812
oooooeeee	chr17:46653889-46654097(-)$1	208	44	53	18.9531
33=======	chr5:154135164-154135389(+)$1	225	97	106	18.5625
eeeffffff	chr19:1104628-1104901(+)$1	273	68	77	18.9531
CCC{CCC{C	chr5:154136540-154136850(+)$1	310	3	12	18.7187
ddd]bb22b	chr11:64073603-64073832(+)$1	229	109	118	18.5625
hhhhhhhh:	chr3:14988997-14989275(-)$1	278	219	228	18.4062
FFFFcccmm	chr12:50135261-50135498(+)$1	237	15	24	18.5625
##bb[a+++	chr8:25315634-25315935(-)$1	301	95	104	18.7968
fffff====	chr5:177022638-177022889(+)$1	251	88	97	18.9531
KCCCggggg	chr19:1883461-1883723(-)$1	262	32	41	18.2500
hhhhccc[i	chr11:66025344-66025620(+)$1	276	149	158	22.7812
MMHHHHHHH	chr20:57607206-57607476(-)$1	270	15	24	18.7187
dhhhhhhhh	chr22:20105265-20105523(+)$1	258	228	237	18.4062
FFFFFFDDD	chr17:7210829-7211137(+)$1	308	27	36	18.1718

#DB
.(((...((	chr6:117996598-117996872(+)$1	1	124	133	22.7812
..((((.((	chr6:15248992-15249316(+)$1	1	93	102	22.7812
)))))))))	chr2:171785686-171785997(+)$1	1	193	202	22.7812
.(((((.((	chr2:62932874-62933162(+)$1	1	23	32	18.5625
(((((((((	chr20:62272050-62272329(-)$1	1	99	108	18.9531
((.((.(((	chr8:30669975-30670260(-)$1	1	98	107	22.7812
))(((((((	chr1:36689962-36690204(+)$1	1	75	84	22.7812
.....))))	chr19:41859495-41859822(-)$1	1	71	80	18.0937
.)).).)))	chr17:36955688-36955940(-)$1	1	38	47	18.5625
.....((((	chr22:22275609-22275854(-)$1	1	30	39	18.4843
).))).)))	chr19:40971417-40971744(-)$1	1	238	247	18.9531
(((((((((	chr22:50013869-50014164(-)$1	1	96	105	18.4843
))).))..)	chr11:65343564-65343816(+)$1	1	106	115	18.9531
))).)))))	chr2:198364907-198365159(+)$1	1	113	122	18.1718
((((((..(	chr16:89006209-89006438(-)$1	1	84	93	22.7812
.........	chr9:35690581-35690874(-)$1	1	36	45	18.0937
(.(((....	chr16:69165894-69166176(-)$1	1	141	150	18.2500
(((((((..	chr22:19957687-19957933(-)$1	1	70	79	18.9531
(.(((((((	chr4:763940-764193(-)$1	1	97	106	18.4843
.))))))))	chr15:80215285-80215613(-)$1	1	59	68	18.4062
....)))))	chr4:103748422-103748702(-)$1	1	46	55	18.5625
(((.(((((	chr19:18547926-18548206(-)$1	1	6	15	18.7968
)..))))))	chr9:134269484-134269748(+)$1	1	174	183	18.5625
.((((((.(	chr1:33820628-33821025(+)$1	1	113	122	18.4062
.(((((((.	chr11:85779846-85780131(-)$1	1	80	89	18.5625
..(((((((	chr14:73924870-73925109(-)$1	1	27	36	18.5625
)))))..))	chr18:43678035-43678305(-)$1	1	252	261	18.1718
.(((.....	chr9:139560097-139560361(+)$1	1	52	61	18.7187
))).....(	chr9:123631026-123631310(-)$1	1	57	66	18.9531
((((..(((	chr12:109124334-109124585(-)$1	1	12	21	18.7187
)))))))).	chr22:20133466-20133737(+)$1	1	59	68	18.0937
).(((((((	chr22:42229147-42229413(+)$1	1	29	38	22.7812
)))(((((.	chr19:1273222-1273465(+)$1	1	124	133	18.5625
((((.(((.	chr11:65343650-65343900(+)$1	1	20	29	18.9531
.(((..(((	chr14:50359732-50359973(+)$1	1	128	137	18.4062
(((..((((	chr19:1206108-1206330(+)$1	1	20	29	18.9531
).)))).))	chr6:31696774-31697042(-)$1	1	186	195	18.1718
((.((((..	chr2:114647624-114647920(+)$1	1	16	25	18.5625
(.((((.((	chr1:54871820-54872061(-)$1	1	65	74	18.9531
((((.....	chr7:116502531-116502816(+)$1	1	223	232	18.7187
..(((..(.	chr7:77166723-77166950(+)$1	1	87	96	18.9531
(((.(.(((	chr3:128211823-128212055(+)$1	1	14	23	18.0937
((((((.(.	chr19:12911919-12912185(-)$1	1	86	95	22.7812
..(((((((	chr1:229478056-229478381(-)$1	1	35	44	18.7187
(((((((((	chr19:46142205-46142547(-)$1	1	101	110	18.9531
(((((((((	chr6:151187488-151187747(+)$1	1	68	77	18.9531
.))))))))	chr16:70433093-70433365(-)$1	1	212	221	18.4843
(((((((((	chr11:554461-554755(+)$1	1	91	100	18.9531
))))(((((	chr3:195635692-195635953(-)$1	1	121	130	18.7968
)).).)(((	chr11:46403153-46403407(+)$1	1	40	49	22.7812
.....))))	chr17:46653889-46654097(-)$1	1	44	53	18.9531
..)))))))	chr5:154135164-154135389(+)$1	1	97	106	18.5625
)))))))))	chr19:1104628-1104901(+)$1	1	68	77	18.9531
(((.(((.(	chr5:154136540-154136850(+)$1	1	3	12	18.7187
))).))..)	chr11:64073603-64073832(+)$1	1	109	118	18.5625
)))))))).	chr3:14988997-14989275(-)$1	1	219	228	18.4062
(((((((..	chr12:50135261-50135498(+)$1	1	15	24	18.5625
..((.(...	chr8:25315634-25315935(-)$1	1	95	104	18.7968
)))))))))	chr5:177022638-177022889(+)$1	1	88	97	18.9531
.((((((((	chr19:1883461-1883723(-)$1	1	32	41	18.2500
))))(((.(	chr11:66025344-66025620(+)$1	1	149	158	22.7812
..(((((((	chr20:57607206-57607476(-)$1	1	15	24	18.7187
)))))))))	chr22:20105265-20105523(+)$1	1	228	237	18.4062
(((((((((	chr17:7210829-7211137(+)$1	1	27	36	18.1718

#PSSM
G : 0.65	g : 0.25	A : 0.06	C : 0.01	c : 0.01	
G : 0.70	g : 0.25	U : 0.03	a : 0.01	
G : 0.71	g : 0.25	c : 0.01	C : 0.01	
C : 0.57	c : 0.26	A : 0.07	U : 0.07	
G : 0.67	g : 0.21	U : 0.03	c : 0.03	A : 0.01	a : 0.01	C : 0.01	
G : 0.68	g : 0.26	A : 0.03	C : 0.01	
G : 0.70	g : 0.21	C : 0.03	a : 0.01	c : 0.01	u : 0.01	
G : 0.60	g : 0.23	C : 0.04	A : 0.04	c : 0.03	U : 0.03	
G : 0.65	g : 0.21	C : 0.04	A : 0.03	u : 0.01	c : 0.01	U : 0.01	

#score	1232.53125
#seq	64
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_UTR_m3_run2.nuc.txt

#NT
UGGAG	chr12:133220007-133220239(-)$1	232	205	210	15.0000
UGGAG	chr16:56839308-56839607(+)$1	299	2	7	15.0000
UGGAG	chr3:25824564-25824881(-)$1	317	85	90	15.0000
UGGAG	chr5:130495145-130495418(-)$1	273	245	250	15.0000
UGGAG	chr16:2163178-2163436(-)$1	258	159	164	15.0000
UGGAG	chr7:73100798-73101141(+)$1	343	211	216	15.0000
UGGAG	chr16:67473078-67473378(-)$1	300	131	136	15.0000
UGGAG	chr16:89662765-89663025(+)$1	260	33	38	15.0000
UGGAG	chr19:59084690-59084953(-)$1	263	127	132	15.0000
UGGAG	chr15:74914724-74915019(+)$1	295	155	160	15.0000
UGGAG	chr17:37599724-37599995(-)$1	271	137	142	15.0000
UGGAG	chr17:29533135-29533414(+)$1	279	223	228	15.0000
UGGAG	chr12:51393057-51393312(-)$1	255	31	36	15.0000
UGGAG	chr19:15510049-15510327(-)$1	278	13	18	15.0000
UGGAG	chr16:1828477-1828769(-)$1	292	33	38	15.0000
UGGAG	chr3:195789669-195789881(-)$1	212	109	114	15.0000
UGGAG	chr10:94451876-94452162(+)$1	286	262	267	15.0000
UGGAG	chr17:19861732-19862005(-)$1	273	244	249	15.0000
UGGAG	chr15:70387831-70388087(-)$1	256	115	120	15.0000
UGGAG	chr1:38155345-38155663(-)$1	318	172	177	15.0000
UGGAG	chr1:40210945-40211322(+)$1	377	7	12	15.0000
uggag	chr19:58331707-58331998(+)$1	291	180	185	15.0000
UGGAG	chr17:7530421-7530680(-)$1	259	155	160	15.0000
UGGAG	chr1:45101078-45101407(+)$1	329	240	245	15.0000
UGGAG	chr6:33164045-33164345(-)$1	300	55	60	15.0000
UGGAG	chr3:195791022-195791320(-)$1	298	64	69	15.0000
uggag	chr11:71190901-71191144(+)$1	243	210	215	15.0000
UGGAG	chr8:145650133-145650380(-)$1	247	197	202	15.0000
UGGAG	chr7:44605986-44606263(-)$1	277	55	60	15.0000
UGGAG	chr19:49691797-49692027(+)$1	230	161	166	15.0000
UGGAG	chr17:37617721-37617986(+)$1	265	82	87	15.0000
UGGAG	chr5:90667110-90667397(-)$1	287	255	260	15.0000
UGGAG	chrX:47422164-47422454(+)$1	290	203	208	15.0000
UGGAG	chr16:2143754-2144024(-)$1	270	16	21	15.0000
UGGAG	chr20:42142976-42143286(+)$1	310	126	131	15.0000
UGGAG	chr2:54101478-54101758(-)$1	280	263	268	15.0000
UGGAG	chr17:35634740-35634991(-)$1	251	130	135	15.0000
UGGAG	chr16:28875232-28875467(+)$1	235	129	134	15.0000
UGGAG	chr17:35487011-35487249(-)$1	238	11	16	15.0000
UGGAG	chr9:131184998-131185297(+)$1	299	236	241	15.0000
UGGAG	chr15:37387668-37387924(-)$1	256	231	236	15.0000
UGGAG	chr3:43743595-43743844(+)$1	249	229	234	15.0000
UGGAG	chr5:652976-653247(+)$1	271	79	84	15.0000
UGGAG	chr19:1274139-1274383(+)$1	244	128	133	15.0000
UGGAG	chr1:39792790-39793009(+)$1	219	48	53	15.0000
UGGAG	chr11:66611307-66611576(+)$1	269	1	6	15.0000
UGGAG	chr22:20909306-20909534(+)$1	228	146	151	15.0000

#otherMatches

#Struct PSSM
////F	chr6:43738796-43739037(+)$1	241	214	219	15.0000
GGGGD	chr12:133220007-133220239(-)$1	232	205	210	15.0000
:::::	chr16:56839308-56839607(+)$1	299	2	7	15.0000
cc!!f	chr3:25824564-25824881(-)$1	317	85	90	15.0000
Ehhhh	chr5:130495145-130495418(-)$1	273	245	250	15.0000
ff22d	chr16:2163178-2163436(-)$1	258	159	164	15.0000
dddbb	chr7:73100798-73101141(+)$1	343	211	216	15.0000
C~~~~	chr16:67473078-67473378(-)$1	300	131	136	15.0000
JJJJJ	chr16:89662765-89663025(+)$1	260	33	38	15.0000
d[ann	chr19:59084690-59084953(-)$1	263	127	132	15.0000
"bbmm	chr15:74914724-74915019(+)$1	295	155	160	15.0000
ddd[c	chr17:37599724-37599995(-)$1	271	137	142	15.0000
cclll	chr17:29533135-29533414(+)$1	279	223	228	15.0000
ggggg	chr12:51393057-51393312(-)$1	255	31	36	15.0000
ccppp	chr19:15510049-15510327(-)$1	278	13	18	15.0000
gg!!a	chr16:1828477-1828769(-)$1	292	33	38	15.0000
4cccd	chr3:195789669-195789881(-)$1	212	109	114	15.0000
FFFFF	chr10:94451876-94452162(+)$1	286	262	267	15.0000
fflll	chr17:19861732-19862005(-)$1	273	244	249	15.0000
DDD{C	chr15:70387831-70388087(-)$1	256	115	120	15.0000
cffff	chr1:38155345-38155663(-)$1	318	172	177	15.0000
EEEE:	chr1:40210945-40211322(+)$1	377	7	12	15.0000
iiiii	chr19:58331707-58331998(+)$1	291	180	185	15.0000
fffff	chr17:7530421-7530680(-)$1	259	155	160	15.0000
ddd[a	chr1:45101078-45101407(+)$1	329	240	245	15.0000
c[bb[	chr6:33164045-33164345(-)$1	300	55	60	15.0000
LADDD	chr3:195791022-195791320(-)$1	298	64	69	15.0000
mdddd	chr11:71190901-71191144(+)$1	243	210	215	15.0000
EEEEE	chr8:145650133-145650380(-)$1	247	197	202	15.0000
cc[bb	chr7:44605986-44606263(-)$1	277	55	60	15.0000
=====	chr19:49691797-49692027(+)$1	230	161	166	15.0000
]eeee	chr17:37617721-37617986(+)$1	265	82	87	15.0000
CC}CC	chr5:90667110-90667397(-)$1	287	255	260	15.0000
cccnn	chrX:47422164-47422454(+)$1	290	203	208	15.0000
IIIII	chr16:2143754-2144024(-)$1	270	16	21	15.0000
c]ddd	chr20:42142976-42143286(+)$1	310	126	131	15.0000
GGGGG	chr2:54101478-54101758(-)$1	280	263	268	15.0000
dddee	chr17:35634740-35634991(-)$1	251	130	135	15.0000
iiiii	chr16:28875232-28875467(+)$1	235	129	134	15.0000
=====	chr17:35487011-35487249(-)$1	238	11	16	15.0000
HHDDD	chr9:131184998-131185297(+)$1	299	236	241	15.0000
]dddd	chr15:37387668-37387924(-)$1	256	231	236	15.0000
iiiii	chr3:43743595-43743844(+)$1	249	229	234	15.0000
eee::	chr5:652976-653247(+)$1	271	79	84	15.0000
2eeee	chr19:1274139-1274383(+)$1	244	128	133	15.0000
&eeee	chr1:39792790-39793009(+)$1	219	48	53	15.0000
ccccc	chr11:66611307-66611576(+)$1	269	1	6	15.0000
eeeee	chr22:20909306-20909534(+)$1	228	146	151	15.0000

#DB
....)	chr6:43738796-43739037(+)$1	1	214	219	15.0000
)))))	chr12:133220007-133220239(-)$1	1	205	210	15.0000
.....	chr16:56839308-56839607(+)$1	1	2	7	15.0000
((..(	chr3:25824564-25824881(-)$1	1	85	90	15.0000
)((((	chr5:130495145-130495418(-)$1	1	245	250	15.0000
))..)	chr16:2163178-2163436(-)$1	1	159	164	15.0000
(((((	chr7:73100798-73101141(+)$1	1	211	216	15.0000
)....	chr16:67473078-67473378(-)$1	1	131	136	15.0000
(((((	chr16:89662765-89663025(+)$1	1	33	38	15.0000
(.(..	chr19:59084690-59084953(-)$1	1	127	132	15.0000
.((..	chr15:74914724-74915019(+)$1	1	155	160	15.0000
(((.(	chr17:37599724-37599995(-)$1	1	137	142	15.0000
((...	chr17:29533135-29533414(+)$1	1	223	228	15.0000
)))))	chr12:51393057-51393312(-)$1	1	31	36	15.0000
((...	chr19:15510049-15510327(-)$1	1	13	18	15.0000
((..(	chr16:1828477-1828769(-)$1	1	33	38	15.0000
.))))	chr3:195789669-195789881(-)$1	1	109	114	15.0000
)))))	chr10:94451876-94452162(+)$1	1	262	267	15.0000
((...	chr17:19861732-19862005(-)$1	1	244	249	15.0000
(((.(	chr15:70387831-70388087(-)$1	1	115	120	15.0000
(((((	chr1:38155345-38155663(-)$1	1	172	177	15.0000
((((.	chr1:40210945-40211322(+)$1	1	7	12	15.0000
)))))	chr19:58331707-58331998(+)$1	1	180	185	15.0000
(((((	chr17:7530421-7530680(-)$1	1	155	160	15.0000
(((.(	chr1:45101078-45101407(+)$1	1	240	245	15.0000
(.((.	chr6:33164045-33164345(-)$1	1	55	60	15.0000
.((((	chr3:195791022-195791320(-)$1	1	64	69	15.0000
.))))	chr11:71190901-71191144(+)$1	1	210	215	15.0000
)))))	chr8:145650133-145650380(-)$1	1	197	202	15.0000
((.((	chr7:44605986-44606263(-)$1	1	55	60	15.0000
)))))	chr19:49691797-49692027(+)$1	1	161	166	15.0000
.))))	chr17:37617721-37617986(+)$1	1	82	87	15.0000
)).))	chr5:90667110-90667397(-)$1	1	255	260	15.0000
(((..	chrX:47422164-47422454(+)$1	1	203	208	15.0000
(((((	chr16:2143754-2144024(-)$1	1	16	21	15.0000
).)))	chr20:42142976-42143286(+)$1	1	126	131	15.0000
)))))	chr2:54101478-54101758(-)$1	1	263	268	15.0000
)))((	chr17:35634740-35634991(-)$1	1	130	135	15.0000
)))))	chr16:28875232-28875467(+)$1	1	129	134	15.0000
(((((	chr17:35487011-35487249(-)$1	1	11	16	15.0000
)))))	chr9:131184998-131185297(+)$1	1	236	241	15.0000
.))))	chr15:37387668-37387924(-)$1	1	231	236	15.0000
)))))	chr3:43743595-43743844(+)$1	1	229	234	15.0000
)))..	chr5:652976-653247(+)$1	1	79	84	15.0000
.))))	chr19:1274139-1274383(+)$1	1	128	133	15.0000
.((((	chr1:39792790-39793009(+)$1	1	48	53	15.0000
(((((	chr11:66611307-66611576(+)$1	1	1	6	15.0000
)))))	chr22:20909306-20909534(+)$1	1	146	151	15.0000

#PSSM
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	

#score	720.0000000000001
#seq	48
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_CDS_m1_run2.nuc.txt

#NT
UGA	chr1:203676179-203676439(+)$1	260	5	8	9.0000
UGA	chr19:18499027-18499242(+)$1	215	38	41	9.0000
UGA	chr17:40344362-40344616(-)$1	254	37	40	9.0000
UGA	chr1:116935375-116935611(+)$1	236	20	23	9.0000
UGA	chr4:100518123-100518371(+)$1	248	64	67	9.0000
UGA	chr16:74524982-74525213(-)$1	231	37	40	9.0000
UGA	chr12:58090022-58090256(+)$1	234	135	138	9.0000
UGA	chr1:155226057-155226306(-)$1	249	15	18	9.0000
UGA	chr17:78188415-78188660(-)$1	245	60	63	9.0000
UGA	chr16:74495966-74496192(-)$1	226	63	66	9.0000
UGA	chr19:10395765-10395987(+)$1	222	35	38	9.0000
UGA	chr19:580354-580561(+)$1	207	108	111	9.0000
UGA	chr2:101911537-101911744(-)$1	207	15	18	9.0000
UGA	chr6:31625076-31625309(+)$1	233	28	31	9.0000
UGA	chr19:45489675-45489930(+)$1	255	9	12	9.0000
UGA	chr8:17407709-17407952(+)$1	243	31	34	9.0000
UGA	chr4:74275998-74276212(+)$1	214	35	38	9.0000
UGA	chr17:79803365-79803585(-)$1	220	40	43	9.0000
UGA	chr1:230846032-230846240(-)$1	208	9	12	9.0000
UGA	chr1:40554981-40555197(-)$1	216	59	62	9.0000
UGA	chr19:1496187-1496477(+)$1	290	211	214	9.0000
UGA	chr10:82185548-82185802(+)$1	254	6	9	9.0000
UGA	chr16:10631684-10631968(-)$1	284	70	73	9.0000
UGA	chr9:116838813-116839033(-)$1	220	62	65	9.0000
UGA	chr5:131531004-131531208(-)$1	204	36	39	9.0000
UGA	chr16:74514114-74514348(-)$1	234	125	128	9.0000
UGA	chr16:5075527-5075786(-)$1	259	52	55	9.0000
UGA	chr17:1657340-1657583(+)$1	243	30	33	9.0000
UGA	chr14:95089847-95090058(+)$1	211	47	50	9.0000
UGA	chr1:1374573-1374853(+)$1	280	110	113	9.0000
UGA	chr2:20196897-20197117(-)$1	220	63	66	9.0000
UGA	chr3:183960219-183960505(-)$1	286	11	14	9.0000
UGA	chrX:107840612-107840864(+)$1	252	41	44	9.0000
UGA	chrX:48762446-48762712(-)$1	266	5	8	9.0000
UGA	chr19:58858660-58858899(-)$1	239	28	31	9.0000
UGA	chr4:74310736-74310939(+)$1	203	18	21	9.0000
UGA	chr6:132271415-132271652(-)$1	237	117	120	9.0000
UGA	chr1:169511371-169511591(-)$1	220	25	28	9.0000
UGA	chr3:195794290-195794544(-)$1	254	33	36	9.0000
UGA	chr4:155507724-155507961(-)$1	237	48	51	9.0000
UGA	chr6:53137917-53138175(-)$1	258	159	162	9.0000
uga	chr1:40554997-40555218(-)$1	221	0	3	9.0000
UGA	chr3:141632398-141632655(+)$1	257	5	8	9.0000
UGA	chr2:216245453-216245673(-)$1	220	0	3	9.0000
UGA	chr2:10927423-10927630(-)$1	207	95	98	9.0000
UGA	chr1:155984655-155984885(-)$1	230	17	20	9.0000
UGA	chr1:40556902-40557128(-)$1	226	6	9	9.0000
UGA	chr3:48665953-48666172(-)$1	219	44	47	9.0000
UGA	chr1:11345657-11346026(+)$1	369	109	112	9.0000
UGA	chr15:64448839-64449095(-)$1	256	3	6	9.0000
UGA	chrX:132795659-132795864(-)$1	205	15	18	9.0000
UGA	chr5:96118661-96118940(-)$1	279	33	36	9.0000
UGA	chr6:109689987-109690250(-)$1	263	48	51	9.0000
UGA	chr4:155507191-155507426(-)$1	235	9	12	9.0000
UGA	chr1:19559017-19559305(-)$1	288	11	14	9.0000
UGA	chr3:186335021-186335239(+)$1	218	8	11	9.0000
UGA	chr11:66114604-66114839(-)$1	235	79	82	9.0000
UGA	chr3:49568331-49568589(+)$1	258	10	13	9.0000
UGA	chr17:79816966-79817197(-)$1	231	52	55	9.0000
UGA	chr19:6681929-6682138(-)$1	209	111	114	9.0000
UGA	chr16:16196384-16196609(+)$1	225	16	19	9.0000
UGA	chr1:43830499-43830775(-)$1	276	100	103	9.0000
UGA	chr1:55521597-55521853(+)$1	256	44	47	9.0000
UGA	chr19:6707751-6707960(-)$1	209	105	108	9.0000
UGA	chr15:44060585-44060831(+)$1	246	1	4	9.0000
UGA	chr18:25582864-25583088(-)$1	224	18	21	9.0000
UGA	chr11:130010192-130010446(+)$1	254	52	55	9.0000
UGA	chr1:12034639-12034892(+)$1	253	6	9	9.0000
UGA	chr1:957639-957864(+)$1	225	17	20	9.0000
UGA	chr22:50943453-50943682(-)$1	229	9	12	9.0000
UGA	chr11:118970896-118971159(-)$1	263	221	224	9.0000
UGA	chr5:149784175-149784430(-)$1	255	75	78	9.0000
UGA	chr8:11703126-11703351(-)$1	225	80	83	9.0000
UGA	chr19:49424341-49424607(+)$1	266	43	46	9.0000
UGA	chr18:21136380-21136640(-)$1	260	79	82	9.0000
UGA	chr1:183096380-183096627(+)$1	247	26	29	9.0000
UGA	chr11:62398474-62398738(-)$1	264	57	60	9.0000
UGA	chr4:3519806-3520020(-)$1	214	9	12	9.0000
UGA	chr19:6686151-6686368(-)$1	217	10	13	9.0000
UGA	chr1:156263834-156264118(-)$1	284	6	9	9.0000
UGA	chr13:113976495-113976701(+)$1	206	16	19	9.0000
UGA	chr3:149093387-149093633(-)$1	246	21	24	9.0000
UGA	chr9:116835163-116835367(-)$1	204	76	79	9.0000
UGA	chr11:129998977-129999202(+)$1	225	9	12	9.0000
UGA	chr4:100532199-100532487(+)$1	288	17	20	9.0000
UGA	chr1:43396328-43396554(-)$1	226	2	5	9.0000
UGA	chr1:160969583-160969836(-)$1	253	73	76	9.0000
UGA	chr19:13051570-13051801(+)$1	231	52	55	9.0000
UGA	chr16:74514084-74514306(-)$1	222	83	86	9.0000
UGA	chrX:132833822-132834024(-)$1	202	24	27	9.0000
UGA	chr12:4796030-4796332(+)$1	302	89	92	9.0000
UGA	chr10:82271802-82272045(+)$1	243	23	26	9.0000
UGA	chr1:43396204-43396469(-)$1	265	13	16	9.0000
UGA	chr2:216248657-216248908(-)$1	251	80	83	9.0000
UGA	chr2:188348806-188349021(-)$1	215	16	19	9.0000
UGA	chr17:1655981-1656184(+)$1	203	61	64	9.0000
UGA	chr11:46747435-46747682(+)$1	247	24	27	9.0000
UGA	chr3:33113937-33114210(-)$1	273	25	28	9.0000
UGA	chr8:22269468-22269686(+)$1	218	105	108	9.0000

#otherMatches

#Struct PSSM
eee	chr11:75279960-75280215(+)$1	255	144	147	9.0000
iii	chr1:203676179-203676439(+)$1	260	5	8	9.0000
[cc	chr19:18499027-18499242(+)$1	215	38	41	9.0000
ee[	chr17:40344362-40344616(-)$1	254	37	40	9.0000
ff:	chr1:116935375-116935611(+)$1	236	20	23	9.0000
ggg	chr4:100518123-100518371(+)$1	248	64	67	9.0000
33g	chr16:74524982-74525213(-)$1	231	37	40	9.0000
ddd	chr12:58090022-58090256(+)$1	234	135	138	9.0000
fmm	chr1:155226057-155226306(-)$1	249	15	18	9.0000
h""	chr17:78188415-78188660(-)$1	245	60	63	9.0000
:FF	chr16:74495966-74496192(-)$1	226	63	66	9.0000
ddd	chr19:10395765-10395987(+)$1	222	35	38	9.0000
!!d	chr19:580354-580561(+)$1	207	108	111	9.0000
ooo	chr2:101911537-101911744(-)$1	207	15	18	9.0000
Icc	chr6:31625076-31625309(+)$1	233	28	31	9.0000
===	chr19:45489675-45489930(+)$1	255	9	12	9.0000
DD:	chr8:17407709-17407952(+)$1	243	31	34	9.0000
ooo	chr4:74275998-74276212(+)$1	214	35	38	9.0000
Gcc	chr17:79803365-79803585(-)$1	220	40	43	9.0000
EKK	chr1:230846032-230846240(-)$1	208	9	12	9.0000
ddd	chr1:40554981-40555197(-)$1	216	59	62	9.0000
bb:	chr19:1496187-1496477(+)$1	290	211	214	9.0000
:::	chr10:82185548-82185802(+)$1	254	6	9	9.0000
cct	chr16:10631684-10631968(-)$1	284	70	73	9.0000
bnn	chr9:116838813-116839033(-)$1	220	62	65	9.0000
dd3	chr5:131531004-131531208(-)$1	204	36	39	9.0000
3ee	chr16:74514114-74514348(-)$1	234	125	128	9.0000
cc:	chr16:5075527-5075786(-)$1	259	52	55	9.0000
[a[	chr17:1657340-1657583(+)$1	243	30	33	9.0000
[dd	chr14:95089847-95090058(+)$1	211	47	50	9.0000
333	chr1:1374573-1374853(+)$1	280	110	113	9.0000
EE:	chr2:20196897-20197117(-)$1	220	63	66	9.0000
FFF	chr3:183960219-183960505(-)$1	286	11	14	9.0000
[ii	chrX:107840612-107840864(+)$1	252	41	44	9.0000
GGG	chrX:48762446-48762712(-)$1	266	5	8	9.0000
NNN	chr19:58858660-58858899(-)$1	239	28	31	9.0000
C::	chr4:74310736-74310939(+)$1	203	18	21	9.0000
YYH	chr6:132271415-132271652(-)$1	237	117	120	9.0000
rrr	chr1:169511371-169511591(-)$1	220	25	28	9.0000
ffr	chr3:195794290-195794544(-)$1	254	33	36	9.0000
EEE	chr4:155507724-155507961(-)$1	237	48	51	9.0000
fff	chr6:53137917-53138175(-)$1	258	159	162	9.0000
:::	chr1:40554997-40555218(-)$1	221	0	3	9.0000
ggg	chr3:141632398-141632655(+)$1	257	5	8	9.0000
:::	chr2:216245453-216245673(-)$1	220	0	3	9.0000
eee	chr2:10927423-10927630(-)$1	207	95	98	9.0000
fff	chr1:155984655-155984885(-)$1	230	17	20	9.0000
rrr	chr1:40556902-40557128(-)$1	226	6	9	9.0000
gg]	chr3:48665953-48666172(-)$1	219	44	47	9.0000
fff	chr1:11345657-11346026(+)$1	369	109	112	9.0000
{DD	chr15:64448839-64449095(-)$1	256	3	6	9.0000
:::	chrX:132795659-132795864(-)$1	205	15	18	9.0000
:::	chr5:96118661-96118940(-)$1	279	33	36	9.0000
eee	chr6:109689987-109690250(-)$1	263	48	51	9.0000
:::	chr4:155507191-155507426(-)$1	235	9	12	9.0000
HHH	chr1:19559017-19559305(-)$1	288	11	14	9.0000
F::	chr3:186335021-186335239(+)$1	218	8	11	9.0000
bbn	chr11:66114604-66114839(-)$1	235	79	82	9.0000
:::	chr3:49568331-49568589(+)$1	258	10	13	9.0000
dd]	chr17:79816966-79817197(-)$1	231	52	55	9.0000
qqq	chr19:6681929-6682138(-)$1	209	111	114	9.0000
ee!	chr16:16196384-16196609(+)$1	225	16	19	9.0000
d22	chr1:43830499-43830775(-)$1	276	100	103	9.0000
EII	chr1:55521597-55521853(+)$1	256	44	47	9.0000
dd[	chr19:6707751-6707960(-)$1	209	105	108	9.0000
:::	chr15:44060585-44060831(+)$1	246	1	4	9.0000
{FF	chr18:25582864-25583088(-)$1	224	18	21	9.0000
GGL	chr11:130010192-130010446(+)$1	254	52	55	9.0000
DDD	chr1:12034639-12034892(+)$1	253	6	9	9.0000
bnn	chr1:957639-957864(+)$1	225	17	20	9.0000
BMM	chr22:50943453-50943682(-)$1	229	9	12	9.0000
YCC	chr11:118970896-118971159(-)$1	263	221	224	9.0000
bb]	chr5:149784175-149784430(-)$1	255	75	78	9.0000
dd:	chr8:11703126-11703351(-)$1	225	80	83	9.0000
b]c	chr19:49424341-49424607(+)$1	266	43	46	9.0000
e33	chr18:21136380-21136640(-)$1	260	79	82	9.0000
]cc	chr1:183096380-183096627(+)$1	247	26	29	9.0000
nnc	chr11:62398474-62398738(-)$1	264	57	60	9.0000
qqq	chr4:3519806-3520020(-)$1	214	9	12	9.0000
FF:	chr19:6686151-6686368(-)$1	217	10	13	9.0000
[dd	chr1:156263834-156264118(-)$1	284	6	9	9.0000
GGG	chr13:113976495-113976701(+)$1	206	16	19	9.0000
:::	chr3:149093387-149093633(-)$1	246	21	24	9.0000
!cc	chr9:116835163-116835367(-)$1	204	76	79	9.0000
KKB	chr11:129998977-129999202(+)$1	225	9	12	9.0000
nnn	chr4:100532199-100532487(+)$1	288	17	20	9.0000
CC:	chr1:43396328-43396554(-)$1	226	2	5	9.0000
:::	chr1:160969583-160969836(-)$1	253	73	76	9.0000
VVV	chr19:13051570-13051801(+)$1	231	52	55	9.0000
fff	chr16:74514084-74514306(-)$1	222	83	86	9.0000
www	chrX:132833822-132834024(-)$1	202	24	27	9.0000
eee	chr12:4796030-4796332(+)$1	302	89	92	9.0000
ppp	chr10:82271802-82272045(+)$1	243	23	26	9.0000
:DD	chr1:43396204-43396469(-)$1	265	13	16	9.0000
fff	chr2:216248657-216248908(-)$1	251	80	83	9.0000
ffq	chr2:188348806-188349021(-)$1	215	16	19	9.0000
d::	chr17:1655981-1656184(+)$1	203	61	64	9.0000
[bb	chr11:46747435-46747682(+)$1	247	24	27	9.0000
GG:	chr3:33113937-33114210(-)$1	273	25	28	9.0000
sff	chr8:22269468-22269686(+)$1	218	105	108	9.0000

#DB
)))	chr11:75279960-75280215(+)$1	1	144	147	9.0000
(((	chr1:203676179-203676439(+)$1	1	5	8	9.0000
.((	chr19:18499027-18499242(+)$1	1	38	41	9.0000
((.	chr17:40344362-40344616(-)$1	1	37	40	9.0000
)).	chr1:116935375-116935611(+)$1	1	20	23	9.0000
)))	chr4:100518123-100518371(+)$1	1	64	67	9.0000
..)	chr16:74524982-74525213(-)$1	1	37	40	9.0000
(((	chr12:58090022-58090256(+)$1	1	135	138	9.0000
(..	chr1:155226057-155226306(-)$1	1	15	18	9.0000
(..	chr17:78188415-78188660(-)$1	1	60	63	9.0000
.((	chr16:74495966-74496192(-)$1	1	63	66	9.0000
(((	chr19:10395765-10395987(+)$1	1	35	38	9.0000
..(	chr19:580354-580561(+)$1	1	108	111	9.0000
...	chr2:101911537-101911744(-)$1	1	15	18	9.0000
(((	chr6:31625076-31625309(+)$1	1	28	31	9.0000
(((	chr19:45489675-45489930(+)$1	1	9	12	9.0000
((.	chr8:17407709-17407952(+)$1	1	31	34	9.0000
...	chr4:74275998-74276212(+)$1	1	35	38	9.0000
(((	chr17:79803365-79803585(-)$1	1	40	43	9.0000
(..	chr1:230846032-230846240(-)$1	1	9	12	9.0000
)))	chr1:40554981-40555197(-)$1	1	59	62	9.0000
)).	chr19:1496187-1496477(+)$1	1	211	214	9.0000
...	chr10:82185548-82185802(+)$1	1	6	9	9.0000
((.	chr16:10631684-10631968(-)$1	1	70	73	9.0000
(..	chr9:116838813-116839033(-)$1	1	62	65	9.0000
)).	chr5:131531004-131531208(-)$1	1	36	39	9.0000
.))	chr16:74514114-74514348(-)$1	1	125	128	9.0000
)).	chr16:5075527-5075786(-)$1	1	52	55	9.0000
.(.	chr17:1657340-1657583(+)$1	1	30	33	9.0000
.((	chr14:95089847-95090058(+)$1	1	47	50	9.0000
...	chr1:1374573-1374853(+)$1	1	110	113	9.0000
((.	chr2:20196897-20197117(-)$1	1	63	66	9.0000
(((	chr3:183960219-183960505(-)$1	1	11	14	9.0000
.((	chrX:107840612-107840864(+)$1	1	41	44	9.0000
(((	chrX:48762446-48762712(-)$1	1	5	8	9.0000
...	chr19:58858660-58858899(-)$1	1	28	31	9.0000
(..	chr4:74310736-74310939(+)$1	1	18	21	9.0000
..)	chr6:132271415-132271652(-)$1	1	117	120	9.0000
...	chr1:169511371-169511591(-)$1	1	25	28	9.0000
((.	chr3:195794290-195794544(-)$1	1	33	36	9.0000
(((	chr4:155507724-155507961(-)$1	1	48	51	9.0000
)))	chr6:53137917-53138175(-)$1	1	159	162	9.0000
...	chr1:40554997-40555218(-)$1	1	0	3	9.0000
(((	chr3:141632398-141632655(+)$1	1	5	8	9.0000
...	chr2:216245453-216245673(-)$1	1	0	3	9.0000
(((	chr2:10927423-10927630(-)$1	1	95	98	9.0000
(((	chr1:155984655-155984885(-)$1	1	17	20	9.0000
...	chr1:40556902-40557128(-)$1	1	6	9	9.0000
)).	chr3:48665953-48666172(-)$1	1	44	47	9.0000
)))	chr1:11345657-11346026(+)$1	1	109	112	9.0000
.((	chr15:64448839-64449095(-)$1	1	3	6	9.0000
...	chrX:132795659-132795864(-)$1	1	15	18	9.0000
...	chr5:96118661-96118940(-)$1	1	33	36	9.0000
(((	chr6:109689987-109690250(-)$1	1	48	51	9.0000
...	chr4:155507191-155507426(-)$1	1	9	12	9.0000
(((	chr1:19559017-19559305(-)$1	1	11	14	9.0000
(..	chr3:186335021-186335239(+)$1	1	8	11	9.0000
((.	chr11:66114604-66114839(-)$1	1	79	82	9.0000
...	chr3:49568331-49568589(+)$1	1	10	13	9.0000
)).	chr17:79816966-79817197(-)$1	1	52	55	9.0000
...	chr19:6681929-6682138(-)$1	1	111	114	9.0000
((.	chr16:16196384-16196609(+)$1	1	16	19	9.0000
)..	chr1:43830499-43830775(-)$1	1	100	103	9.0000
(((	chr1:55521597-55521853(+)$1	1	44	47	9.0000
((.	chr19:6707751-6707960(-)$1	1	105	108	9.0000
...	chr15:44060585-44060831(+)$1	1	1	4	9.0000
.((	chr18:25582864-25583088(-)$1	1	18	21	9.0000
((.	chr11:130010192-130010446(+)$1	1	52	55	9.0000
(((	chr1:12034639-12034892(+)$1	1	6	9	9.0000
(..	chr1:957639-957864(+)$1	1	17	20	9.0000
(..	chr22:50943453-50943682(-)$1	1	9	12	9.0000
.))	chr11:118970896-118971159(-)$1	1	221	224	9.0000
)).	chr5:149784175-149784430(-)$1	1	75	78	9.0000
)).	chr8:11703126-11703351(-)$1	1	80	83	9.0000
).)	chr19:49424341-49424607(+)$1	1	43	46	9.0000
)..	chr18:21136380-21136640(-)$1	1	79	82	9.0000
.))	chr1:183096380-183096627(+)$1	1	26	29	9.0000
..)	chr11:62398474-62398738(-)$1	1	57	60	9.0000
...	chr4:3519806-3520020(-)$1	1	9	12	9.0000
((.	chr19:6686151-6686368(-)$1	1	10	13	9.0000
.((	chr1:156263834-156264118(-)$1	1	6	9	9.0000
(((	chr13:113976495-113976701(+)$1	1	16	19	9.0000
...	chr3:149093387-149093633(-)$1	1	21	24	9.0000
.((	chr9:116835163-116835367(-)$1	1	76	79	9.0000
..(	chr11:129998977-129999202(+)$1	1	9	12	9.0000
...	chr4:100532199-100532487(+)$1	1	17	20	9.0000
((.	chr1:43396328-43396554(-)$1	1	2	5	9.0000
...	chr1:160969583-160969836(-)$1	1	73	76	9.0000
...	chr19:13051570-13051801(+)$1	1	52	55	9.0000
)))	chr16:74514084-74514306(-)$1	1	83	86	9.0000
...	chrX:132833822-132834024(-)$1	1	24	27	9.0000
)))	chr12:4796030-4796332(+)$1	1	89	92	9.0000
...	chr10:82271802-82272045(+)$1	1	23	26	9.0000
.((	chr1:43396204-43396469(-)$1	1	13	16	9.0000
)))	chr2:216248657-216248908(-)$1	1	80	83	9.0000
((.	chr2:188348806-188349021(-)$1	1	16	19	9.0000
)..	chr17:1655981-1656184(+)$1	1	61	64	9.0000
.((	chr11:46747435-46747682(+)$1	1	24	27	9.0000
((.	chr3:33113937-33114210(-)$1	1	25	28	9.0000
.))	chr8:22269468-22269686(+)$1	1	105	108	9.0000

#PSSM
U : 0.99	u : 0.01	
G : 0.99	g : 0.01	
A : 0.99	a : 0.01	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_transcript_m2_run2.nuc.txt

#NT
GAGUGGAGGG	chr2:97467792-97468154(+)$1	362	223	233	18.1355
GGGAGGAAGG	chr4:78078294-78078557(+)$1	263	223	233	16.0169
GGGGGCAGGG	chr16:57303970-57304299(-)$1	329	19	29	16.1016
gggaggaggg	chr11:111170377-111170658(+)$1	281	119	129	20.5932
GGGUGGAGGC	chr14:34931103-34931385(-)$1	282	165	175	18.5593
GGAUGGAGGG	chr15:101999790-102000036(-)$1	246	157	167	18.3050
GGGAGGAGGC	chr10:732182-732494(-)$1	312	37	47	16.7796
GGGUGGAGGG	chr9:136793013-136793302(-)$1	289	129	139	22.3728
GGGUGGGGAG	chr13:99209555-99209844(-)$1	289	75	85	16.2711
GGGUGGGGGU	chr17:76124078-76124314(-)$1	236	46	56	15.8474
GGGUGGGGGC	chr2:242704276-242704604(+)$1	328	237	247	16.1016
gggagguggg	chr12:7037120-7037376(+)$1	256	179	189	17.4576
gggcggaggu	chr10:80829802-80830089(+)$1	287	64	74	16.4406
GGGUGGAGUG	chr16:81535032-81535292(+)$1	260	105	115	18.3050
GGGUGGUGAG	chr18:77908848-77909178(+)$1	330	36	46	15.5932
gcggggaggg	chr19:56652822-56653067(+)$1	245	20	30	16.5254
GGGUGAGGGG	chr19:7709197-7709515(+)$1	318	26	36	15.1694
GGGGGGGGGG	chr12:121341382-121341628(-)$1	246	83	93	18.3898
ggguggggga	chr7:2690557-2690819(+)$1	262	81	91	15.8474
GGGUGGGGGG	chr6:30688713-30688956(+)$1	243	77	87	19.9152
GGGUGGGGAG	chr6:43741100-43741368(+)$1	268	100	110	16.2711
GGGCGGAGGG	chr6:34359658-34359978(-)$1	320	155	165	20.5084
GGGUGGAGAg	chr13:113347669-113347974(+)$1	305	124	134	18.7288
GGGAGGUGGG	chr2:48010955-48011210(+)$1	255	21	31	17.4576
AGGUGGAGGG	chr17:44847627-44847885(-)$1	258	109	119	17.6271
GGGAGGAGAG	chr1:39457340-39457576(+)$1	236	151	161	16.9491
GGCUGGAGGC	chr2:219524409-219524751(+)$1	342	94	104	14.6610
GAGCGGAGGG	chr22:21212433-21212732(-)$1	299	4	14	16.2711
GGGUGGGCGG	chr11:2152329-2152540(-)$1	211	115	125	15.2542
GGCUGGAGGG	chr19:39138496-39138766(+)$1	270	74	84	18.4745
gggcggaggg	chr6:170123971-170124248(-)$1	277	90	100	20.5084
GGGUGGAGCG	chr11:64009127-64009408(+)$1	281	99	109	18.4745
GGCGGGAGGG	chr1:201123085-201123346(-)$1	261	97	107	16.9491
GGGUGGAAGG	chr1:179198131-179198412(-)$1	281	132	142	17.7966
GGGGCGAGGG	chr19:18548058-18548296(-)$1	238	10	20	16.1864
GGGGGGCGGG	chr9:35690435-35690696(-)$1	261	18	28	17.5423
GGGUGGAGGG	chr19:575269-575525(+)$1	256	199	209	22.3728
GGGUGGGGGG	chr21:34775942-34776192(+)$1	250	58	68	19.9152
GGGUGGGGCG	chr3:197024767-197025070(-)$1	303	139	149	16.0169
GGGAGGAGGG	chr2:139259329-139259583(+)$1	254	197	207	20.5932
GGGGGGAGGG	chr19:42756346-42756604(-)$1	258	105	115	20.8474
GGGUGGAGAG	chr2:219265762-219266043(+)$1	281	97	107	18.7288
GGGCUGAGGG	chr11:61595593-61595885(+)$1	292	10	20	15.9322
CGGGGGAGGG	chr15:80215316-80215603(-)$1	287	52	62	16.1016
GGGAGGAGGA	chr11:14520826-14521085(-)$1	259	91	101	16.5254
GGAUGGUGGG	chr16:23517372-23517680(-)$1	308	49	59	15.1694
GGCGGGAGGG	chr8:87354964-87355213(+)$1	249	237	247	16.9491
GGGAGGAGGC	chr22:29280596-29280834(+)$1	238	3	13	16.7796
ggguggaggg	chr6:170049638-170049927(-)$1	289	87	97	22.3728
GGGCGGAGGG	chr16:29819227-29819508(+)$1	281	45	55	20.5084
GUGGGGAGGG	chr22:29426486-29426741(+)$1	255	107	117	16.4406
GGGUGGCGGG	chr19:49607516-49607786(+)$1	270	115	125	19.0677
GCGUGGAGGG	chr19:50359538-50359816(+)$1	278	72	82	18.0508
GAGGGGAGGG	chr16:89478145-89478438(-)$1	293	2	12	16.6101
GGCUGGAGGG	chr6:17706317-17706584(-)$1	267	122	132	18.4745
ggggugaggg	chr16:447710-447968(+)$1	258	2	12	16.2711
GGACGGAGGG	chr20:33872326-33872573(-)$1	247	161	171	16.4406
GGGCGGAGGG	chr19:56152567-56152848(+)$1	281	100	110	20.5084

#otherMatches

#Struct PSSM
e:ccc[cccm	chr6:64283009-64283254(+)$1	245	108	118	16.0169
e:iiiiiiii	chr2:97467792-97468154(+)$1	362	223	233	18.1355
(((((((((d	chr4:78078294-78078557(+)$1	263	223	233	16.0169
fff!!bb$$$	chr16:57303970-57304299(-)$1	329	19	29	16.1016
44a]a]bb]b	chr11:111170377-111170658(+)$1	281	119	129	20.5932
iii:::::bb	chr14:34931103-34931385(-)$1	282	165	175	18.5593
ff::::::::	chr15:101999790-102000036(-)$1	246	157	167	18.3050
ee::::::cc	chr10:732182-732494(-)$1	312	37	47	16.7796
4eeeee]ddd	chr9:136793013-136793302(-)$1	289	129	139	22.3728
meeeee5555	chr13:99209555-99209844(-)$1	289	75	85	16.2711
oeeeeecccg	chr17:76124078-76124314(-)$1	236	46	56	15.8474
mmeeeee]ae	chr2:242704276-242704604(+)$1	328	237	247	16.1016
gg::ccc!!h	chr12:7037120-7037376(+)$1	256	179	189	17.4576
BB{CCC:CCC	chr10:80829802-80830089(+)$1	287	64	74	16.4406
D{AFFFFFF=	chr16:81535032-81535292(+)$1	260	105	115	18.3050
ddCCC{CCCN	chr18:77908848-77909178(+)$1	330	36	46	15.5932
EE::::::::	chr19:56652822-56653067(+)$1	245	20	30	16.5254
EEEEE{EEEE	chr19:7709197-7709515(+)$1	318	26	36	15.1694
oooobb]a]d	chr12:121341382-121341628(-)$1	246	83	93	18.3898
ldddd]bb55	chr7:2690557-2690819(+)$1	262	81	91	15.8474
na]eeeee22	chr6:30688713-30688956(+)$1	243	77	87	19.9152
JJJJJJJJJJ	chr6:43741100-43741368(+)$1	268	100	110	16.2711
:gggggggbb	chr6:34359658-34359978(-)$1	320	155	165	20.5084
KKFFFFFF{B	chr13:113347669-113347974(+)$1	305	124	134	18.7288
[a!!ddddmm	chr2:48010955-48011210(+)$1	255	21	31	17.4576
!a[bb[iiii	chr17:44847627-44847885(-)$1	258	109	119	17.6271
nnn=======	chr1:39457340-39457576(+)$1	236	151	161	16.9491
c[ammmma]c	chr2:219524409-219524751(+)$1	342	94	104	14.6610
EEEEEE::::	chr22:21212433-21212732(-)$1	299	4	14	16.2711
uuuuuuuuu=	chr11:2152329-2152540(-)$1	211	115	125	15.2542
dddd]a]ccc	chr19:39138496-39138766(+)$1	270	74	84	18.4745
oobb333fff	chr6:170123971-170124248(-)$1	277	90	100	20.5084
]gggggggcc	chr11:64009127-64009408(+)$1	281	99	109	18.4745
GGGddddccc	chr1:201123085-201123346(-)$1	261	97	107	16.9491
eeeeennnnn	chr1:179198131-179198412(-)$1	281	132	142	17.7966
A{CCC{CCCK	chr19:18548058-18548296(-)$1	238	10	20	16.1864
{FFFFFFJJJ	chr9:35690435-35690696(-)$1	261	18	28	17.5423
gggggggmmm	chr19:575269-575525(+)$1	256	199	209	22.3728
mccc333ddd	chr21:34775942-34776192(+)$1	250	58	68	19.9152
FFFFFFFFFF	chr3:197024767-197025070(-)$1	303	139	149	16.0169
fff]ccc]dd	chr2:139259329-139259583(+)$1	254	197	207	20.5932
eeeee!!ccc	chr19:42756346-42756604(-)$1	258	105	115	20.8474
eeeee22ddd	chr2:219265762-219266043(+)$1	281	97	107	18.7288
oodddd]a::	chr11:61595593-61595885(+)$1	292	10	20	15.9322
ceeeee22dd	chr15:80215316-80215603(-)$1	287	52	62	16.1016
=========3	chr11:14520826-14521085(-)$1	259	91	101	16.5254
uccc22ccc]	chr16:23517372-23517680(-)$1	308	49	59	15.1694
A}CCC:::::	chr8:87354964-87355213(+)$1	249	237	247	16.9491
EEKKEEEEEC	chr22:29280596-29280834(+)$1	238	3	13	16.7796
dd[ccc[eee	chr6:170049638-170049927(-)$1	289	87	97	22.3728
KKFFFFFFLL	chr16:29819227-29819508(+)$1	281	45	55	20.5084
[a[ggggggg	chr22:29426486-29426741(+)$1	255	107	117	16.4406
999999bb]d	chr19:49607516-49607786(+)$1	270	115	125	19.0677
ffffff[fff	chr19:50359538-50359816(+)$1	278	72	82	18.0508
::::::::FF	chr16:89478145-89478438(-)$1	293	2	12	16.6101
b[cccppppp	chr6:17706317-17706584(-)$1	267	122	132	18.4745
EEEEEKKBB{	chr16:447710-447968(+)$1	258	2	12	16.2711
eeee::::::	chr20:33872326-33872573(-)$1	247	161	171	16.4406
:dddd####c	chr19:56152567-56152848(+)$1	281	100	110	20.5084

#DB
).(((.(((.	chr6:64283009-64283254(+)$1	1	108	118	16.0169
).((((((((	chr2:97467792-97468154(+)$1	1	223	233	18.1355
.........(	chr4:78078294-78078557(+)$1	1	223	233	16.0169
(((..((...	chr16:57303970-57304299(-)$1	1	19	29	16.1016
..).).)).)	chr11:111170377-111170658(+)$1	1	119	129	20.5932
))).....((	chr14:34931103-34931385(-)$1	1	165	175	18.5593
))........	chr15:101999790-102000036(-)$1	1	157	167	18.3050
))......((	chr10:732182-732494(-)$1	1	37	47	16.7796
.))))).)))	chr9:136793013-136793302(-)$1	1	129	139	22.3728
.)))))....	chr13:99209555-99209844(-)$1	1	75	85	16.2711
.)))))))))	chr17:76124078-76124314(-)$1	1	46	56	15.8474
..))))).))	chr2:242704276-242704604(+)$1	1	237	247	16.1016
))..(((..(	chr12:7037120-7037376(+)$1	1	179	189	17.4576
((.(((.(((	chr10:80829802-80830089(+)$1	1	64	74	16.4406
(.((((((((	chr16:81535032-81535292(+)$1	1	105	115	18.3050
))(((.(((.	chr18:77908848-77909178(+)$1	1	36	46	15.5932
((........	chr19:56652822-56653067(+)$1	1	20	30	16.5254
(((((.((((	chr19:7709197-7709515(+)$1	1	26	36	15.1694
....)).).)	chr12:121341382-121341628(-)$1	1	83	93	18.3898
.)))).))..	chr7:2690557-2690819(+)$1	1	81	91	15.8474
.).)))))..	chr6:30688713-30688956(+)$1	1	77	87	19.9152
((((((((((	chr6:43741100-43741368(+)$1	1	100	110	16.2711
.(((((((((	chr6:34359658-34359978(-)$1	1	155	165	20.5084
..((((((.(	chr13:113347669-113347974(+)$1	1	124	134	18.7288
.(..((((..	chr2:48010955-48011210(+)$1	1	21	31	17.4576
.(.((.((((	chr17:44847627-44847885(-)$1	1	109	119	17.6271
...)))))))	chr1:39457340-39457576(+)$1	1	151	161	16.9491
(.(....).)	chr2:219524409-219524751(+)$1	1	94	104	14.6610
((((((....	chr22:21212433-21212732(-)$1	1	4	14	16.2711
.........)	chr11:2152329-2152540(-)$1	1	115	125	15.2542
)))).).)))	chr19:39138496-39138766(+)$1	1	74	84	18.4745
..))...)))	chr6:170123971-170124248(-)$1	1	90	100	20.5084
.)))))))))	chr11:64009127-64009408(+)$1	1	99	109	18.4745
((((((((((	chr1:201123085-201123346(-)$1	1	97	107	16.9491
(((((.....	chr1:179198131-179198412(-)$1	1	132	142	17.7966
(.(((.(((.	chr19:18548058-18548296(-)$1	1	10	20	16.1864
.(((((((((	chr9:35690435-35690696(-)$1	1	18	28	17.5423
(((((((...	chr19:575269-575525(+)$1	1	199	209	22.3728
.)))...)))	chr21:34775942-34776192(+)$1	1	58	68	19.9152
((((((((((	chr3:197024767-197025070(-)$1	1	139	149	16.0169
))).))).))	chr2:139259329-139259583(+)$1	1	197	207	20.5932
(((((..(((	chr19:42756346-42756604(-)$1	1	105	115	20.8474
)))))..)))	chr2:219265762-219266043(+)$1	1	97	107	18.7288
..)))).)..	chr11:61595593-61595885(+)$1	1	10	20	15.9322
))))))..))	chr15:80215316-80215603(-)$1	1	52	62	16.1016
))))))))).	chr11:14520826-14521085(-)$1	1	91	101	16.5254
.)))..))).	chr16:23517372-23517680(-)$1	1	49	59	15.1694
).))).....	chr8:87354964-87355213(+)$1	1	237	247	16.9491
((..((((((	chr22:29280596-29280834(+)$1	1	3	13	16.7796
((.(((.(((	chr6:170049638-170049927(-)$1	1	87	97	22.3728
..((((((..	chr16:29819227-29819508(+)$1	1	45	55	20.5084
.(.(((((((	chr22:29426486-29426741(+)$1	1	107	117	16.4406
......)).)	chr19:49607516-49607786(+)$1	1	115	125	19.0677
((((((.(((	chr19:50359538-50359816(+)$1	1	72	82	18.0508
........((	chr16:89478145-89478438(-)$1	1	2	12	16.6101
(.(((.....	chr6:17706317-17706584(-)$1	1	122	132	18.4745
(((((..((.	chr16:447710-447968(+)$1	1	2	12	16.2711
))))......	chr20:33872326-33872573(-)$1	1	161	171	16.4406
.((((....(	chr19:56152567-56152848(+)$1	1	100	110	20.5084

#PSSM
G : 0.83	g : 0.13	A : 0.01	C : 0.01	
G : 0.77	g : 0.11	A : 0.05	c : 0.01	U : 0.01	C : 0.01	
G : 0.72	g : 0.13	C : 0.08	A : 0.05	
U : 0.47	G : 0.16	A : 0.11	C : 0.10	a : 0.03	c : 0.03	g : 0.03	u : 0.03	
G : 0.83	g : 0.11	C : 0.01	U : 0.01	u : 0.01	
G : 0.83	g : 0.13	C : 0.01	A : 0.01	
A : 0.59	G : 0.18	a : 0.10	U : 0.05	C : 0.03	u : 0.01	g : 0.01	
G : 0.81	g : 0.13	A : 0.03	C : 0.01	
G : 0.69	g : 0.13	A : 0.10	C : 0.05	U : 0.01	
G : 0.72	g : 0.11	C : 0.08	U : 0.01	u : 0.01	a : 0.01	A : 0.01	

#score	1045.0847457627106
#seq	59
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_CDS_m1_run2.nuc.txt

#NT
UAGAUUUUUUU	chr12:93792511-93792810(+)$1	299	248	259	14.4000
UUUAAUUUGUA	chr6:91260111-91260385(-)$1	274	65	76	14.3000
UAUAAUUUUUU	chr6:160164581-160164844(+)$1	263	91	102	22.2000
UAUAACUUUUC	chr15:93488945-93489215(+)$1	270	71	82	16.2000
UAUAAUCUUUC	chr1:109893476-109893733(-)$1	257	96	107	15.4000
uauaacuuuau	chr4:67616-67865(+)$1	249	46	57	15.0000
UCUAAUAUUUU	chr8:141856626-141856894(-)$1	268	64	75	16.2000
UGUAAGUUUUC	chr21:40636646-40636921(-)$1	275	9	20	13.7000
UCUAAAUUUUA	chr17:25638427-25638649(+)$1	222	36	47	14.8000
UAUAAUUUUAA	chr12:56194503-56194792(-)$1	289	33	44	16.3000
ACUAAUUUUUU	chr12:93792415-93792678(+)$1	263	52	63	16.9000
UAUAAGUUUGA	chr17:45738369-45738616(+)$1	247	236	247	12.6000
UAAGAUUUUUU	chr1:100203702-100203938(-)$1	236	82	93	14.1000
UCUAACUUUUU	chr16:70578233-70578474(+)$1	241	86	97	16.8000
UAUUAUUUUUU	chr8:64087737-64088051(+)$1	314	41	52	18.1000
AAUAAUUUUAG	chr4:54248341-54248615(+)$1	274	0	11	12.4000
CAUACUUUUUU	chr20:3925669-3926004(-)$1	335	119	130	14.6000
UAUUAUAUUUU	chr3:182545882-182546134(+)$1	252	96	107	14.1000
GAUAAUuucuu	chr6:43594517-43594826(-)$1	309	225	236	14.0000
UAGAAAUUUUA	chr7:151900024-151900266(-)$1	242	70	81	12.9000
AAUAAUUUUCU	chr1:172546811-172547081(+)$1	270	226	237	14.9000
AAUAAUCUUUC	chr1:151400761-151401006(-)$1	245	33	44	12.1000
AAUAAUUGUUG	chr1:35824935-35825154(+)$1	219	114	125	11.8000
UUUAACUUUUA	chr5:32395144-32395379(-)$1	235	123	134	15.3000
UAUAAUUUUUU	chr5:139819544-139819830(+)$1	286	36	47	22.2000
UUUAAAUAUUU	chrX:48434780-48435035(+)$1	255	93	104	13.1000
UAUAAUUGUGU	chrX:24827912-24828221(+)$1	309	59	70	13.8000
UUUUAUUUUUA	chr7:104715151-104715456(+)$1	305	230	241	14.6000
UUUAAUUAUUU	chr9:132845705-132845985(+)$1	280	25	36	16.4000
uuuaauuuuuu	chr3:160254450-160254731(-)$1	281	87	98	20.8000
UGUAGUUUUUU	chr15:63866126-63866372(+)$1	246	49	60	16.0000
UUUAAUUUUUU	chrX:44920454-44920693(+)$1	239	82	93	20.8000
UAUAGUUUGUU	chr16:66858633-66858900(-)$1	267	6	17	14.0000
UAAAAUUUUAU	chr12:122995579-122995843(-)$1	264	0	11	14.7000
UUUAAAUUUUU	chr9:95004484-95004730(-)$1	246	91	102	17.5000
UUUAAUAUUUU	chr4:68405419-68405671(-)$1	252	142	153	16.8000
UCUACUUUUUU	chrX:23801650-23801897(+)$1	247	90	101	16.5000
UAUAUUUUUUG	chr12:46764408-46764707(-)$1	299	53	64	15.6000
UCUAAUUUCUU	chr1:144916591-144916873(-)$1	282	51	62	15.8000
ACUAAUUUUUU	chr7:91747807-91748058(-)$1	251	65	76	16.9000
UAUAAAAUUUG	chr5:137281557-137281808(-)$1	251	26	37	12.2000
UAUUCUUUUUU	chr21:47953908-47954161(+)$1	253	199	210	14.4000
UAAAAUUUUCU	chr5:145543864-145544133(-)$1	269	181	192	14.5000
UAUAGUUUUUA	chr15:55484728-55485012(-)$1	284	116	127	16.3000
UUGAAUUUUUC	chr6:4042679-4042934(+)$1	255	24	35	14.3000
UUUACUUUUUA	chr7:30642996-30643259(+)$1	263	28	39	15.0000
AGUAAUUUUUU	chr12:57058444-57058729(-)$1	285	259	270	16.5000
UUAAAUUUUUA	chr4:140297508-140297766(+)$1	258	35	46	15.0000
UAAAAGUUUUU	chr3:156262084-156262354(-)$1	270	69	80	15.0000

#otherMatches

#Struct PSSM
ggg:::=====	chr11:93463073-93463332(+)$1	259	67	78	17.0000
^^^^^^^^^^^	chr12:93792511-93792810(+)$1	299	248	259	14.4000
EEEE{HHHHHH	chr6:91260111-91260385(-)$1	274	65	76	14.3000
mggggggg:::	chr6:160164581-160164844(+)$1	263	91	102	22.2000
!dddd!!eeee	chr15:93488945-93489215(+)$1	270	71	82	16.2000
33eeeee]eee	chr1:109893476-109893733(-)$1	257	96	107	15.4000
xxxx=======	chr4:67616-67865(+)$1	249	46	57	15.0000
hhhhhhhh+++	chr8:141856626-141856894(-)$1	268	64	75	16.2000
eeee$$$$$bb	chr21:40636646-40636921(-)$1	275	9	20	13.7000
duuuuuuuuuu	chr17:25638427-25638649(+)$1	222	36	47	14.8000
::::::::::E	chr12:56194503-56194792(-)$1	289	33	44	16.3000
cc!!ggggggg	chr12:93792415-93792678(+)$1	263	52	63	16.9000
oooobbeeeee	chr17:45738369-45738616(+)$1	247	236	247	12.6000
"ddddnnnnnd	chr1:100203702-100203938(-)$1	236	82	93	14.1000
:::::BBYYGG	chr16:70578233-70578474(+)$1	241	86	97	16.8000
{AKKDDDDKKG	chr8:64087737-64088051(+)$1	314	41	52	18.1000
:::::::::::	chr4:54248341-54248615(+)$1	274	0	11	12.4000
::iiiiiiiii	chr20:3925669-3926004(-)$1	335	119	130	14.6000
+++++++++++	chr3:182545882-182546134(+)$1	252	96	107	14.1000
d[dddd(((((	chr6:43594517-43594826(-)$1	309	225	236	14.0000
C::::::::::	chr7:151900024-151900266(-)$1	242	70	81	12.9000
eemmmmeeeee	chr1:172546811-172547081(+)$1	270	226	237	14.9000
eennnnneeee	chr1:151400761-151401006(-)$1	245	33	44	12.1000
::gggggggcc	chr1:35824935-35825154(+)$1	219	114	125	11.8000
^^^^^^^^^^^	chr5:32395144-32395379(-)$1	235	123	134	15.3000
ILLLFFFFFF{	chr5:139819544-139819830(+)$1	286	36	47	22.2000
dddd:::::::	chrX:48434780-48435035(+)$1	255	93	104	13.1000
&dddd!!bbzz	chrX:24827912-24828221(+)$1	309	59	70	13.8000
22iiiiiiiii	chr7:104715151-104715456(+)$1	305	230	241	14.6000
======qqqqq	chr9:132845705-132845985(+)$1	280	25	36	16.4000
dd]ffffff]d	chr3:160254450-160254731(-)$1	281	87	98	20.8000
ppppdddd]ee	chr15:63866126-63866372(+)$1	246	49	60	16.0000
eeeeeqqqqqq	chrX:44920454-44920693(+)$1	239	82	93	20.8000
eeeeeoooooo	chr16:66858633-66858900(-)$1	267	6	17	14.0000
:::::::::::	chr12:122995579-122995843(-)$1	264	0	11	14.7000
::EEEEEKKII	chr9:95004484-95004730(-)$1	246	91	102	17.5000
ddd22ffffff	chr4:68405419-68405671(-)$1	252	142	153	16.8000
LLJJJJJJJJJ	chrX:23801650-23801897(+)$1	247	90	101	16.5000
iiiiii"""dd	chr12:46764408-46764707(-)$1	299	53	64	15.6000
d!!cccnnnnn	chr1:144916591-144916873(-)$1	282	51	62	15.8000
ll=========	chr7:91747807-91748058(-)$1	251	65	76	16.9000
qqqqqqqqeee	chr5:137281557-137281808(-)$1	251	26	37	12.2000
]ffffff333b	chr21:47953908-47954161(+)$1	253	199	210	14.4000
rrrrrreeeee	chr5:145543864-145544133(-)$1	269	181	192	14.5000
mffffff333b	chr15:55484728-55485012(-)$1	284	116	127	16.3000
cc####ggggg	chr6:4042679-4042934(+)$1	255	24	35	14.3000
ggggg::::::	chr7:30642996-30643259(+)$1	263	28	39	15.0000
JJJ::::::::	chr12:57058444-57058729(-)$1	285	259	270	16.5000
ee"""eeeee!	chr4:140297508-140297766(+)$1	258	35	46	15.0000
4444eeeee66	chr3:156262084-156262354(-)$1	270	69	80	15.0000

#DB
)))...(((((	chr11:93463073-93463332(+)$1	1	67	78	17.0000
...........	chr12:93792511-93792810(+)$1	1	248	259	14.4000
((((.((((((	chr6:91260111-91260385(-)$1	1	65	76	14.3000
.)))))))...	chr6:160164581-160164844(+)$1	1	91	102	22.2000
.((((..((((	chr15:93488945-93489215(+)$1	1	71	82	16.2000
..))))).)))	chr1:109893476-109893733(-)$1	1	96	107	15.4000
....)))))))	chr4:67616-67865(+)$1	1	46	57	15.0000
((((((((...	chr8:141856626-141856894(-)$1	1	64	75	16.2000
((((.....((	chr21:40636646-40636921(-)$1	1	9	20	13.7000
(..........	chr17:25638427-25638649(+)$1	1	36	47	14.8000
..........(	chr12:56194503-56194792(-)$1	1	33	44	16.3000
((..(((((((	chr12:93792415-93792678(+)$1	1	52	63	16.9000
....)))))))	chr17:45738369-45738616(+)$1	1	236	247	12.6000
.((((.....)	chr1:100203702-100203938(-)$1	1	82	93	14.1000
.....))..))	chr16:70578233-70578474(+)$1	1	86	97	16.8000
.(..((((..(	chr8:64087737-64088051(+)$1	1	41	52	18.1000
...........	chr4:54248341-54248615(+)$1	1	0	11	12.4000
..(((((((((	chr20:3925669-3926004(-)$1	1	119	130	14.6000
...........	chr3:182545882-182546134(+)$1	1	96	107	14.1000
(.((((.....	chr6:43594517-43594826(-)$1	1	225	236	14.0000
(..........	chr7:151900024-151900266(-)$1	1	70	81	12.9000
((....)))))	chr1:172546811-172547081(+)$1	1	226	237	14.9000
((.....))))	chr1:151400761-151401006(-)$1	1	33	44	12.1000
..(((((((((	chr1:35824935-35825154(+)$1	1	114	125	11.8000
...........	chr5:32395144-32395379(-)$1	1	123	134	15.3000
(...((((((.	chr5:139819544-139819830(+)$1	1	36	47	22.2000
)))).......	chrX:48434780-48435035(+)$1	1	93	104	13.1000
.((((..((..	chrX:24827912-24828221(+)$1	1	59	70	13.8000
..)))))))))	chr7:104715151-104715456(+)$1	1	230	241	14.6000
((((((.....	chr9:132845705-132845985(+)$1	1	25	36	16.4000
)).)))))).)	chr3:160254450-160254731(-)$1	1	87	98	20.8000
....)))).))	chr15:63866126-63866372(+)$1	1	49	60	16.0000
(((((......	chrX:44920454-44920693(+)$1	1	82	93	20.8000
(((((......	chr16:66858633-66858900(-)$1	1	6	17	14.0000
...........	chr12:122995579-122995843(-)$1	1	0	11	14.7000
..(((((..((	chr9:95004484-95004730(-)$1	1	91	102	17.5000
)))..))))))	chr4:68405419-68405671(-)$1	1	142	153	16.8000
..(((((((((	chrX:23801650-23801897(+)$1	1	90	101	16.5000
((((((...((	chr12:46764408-46764707(-)$1	1	53	64	15.6000
(..(((.....	chr1:144916591-144916873(-)$1	1	51	62	15.8000
..)))))))))	chr7:91747807-91748058(-)$1	1	65	76	16.9000
........)))	chr5:137281557-137281808(-)$1	1	26	37	12.2000
.))))))...)	chr21:47953908-47954161(+)$1	1	199	210	14.4000
......)))))	chr5:145543864-145544133(-)$1	1	181	192	14.5000
.))))))...)	chr15:55484728-55485012(-)$1	1	116	127	16.3000
((....(((((	chr6:4042679-4042934(+)$1	1	24	35	14.3000
)))))......	chr7:30642996-30643259(+)$1	1	28	39	15.0000
)))........	chr12:57058444-57058729(-)$1	1	259	270	16.5000
((...(((((.	chr4:140297508-140297766(+)$1	1	35	46	15.0000
....)))))..	chr3:156262084-156262354(-)$1	1	69	80	15.0000

#PSSM
U : 0.76	A : 0.14	G : 0.04	u : 0.04	C : 0.02	
A : 0.52	U : 0.21	C : 0.14	G : 0.06	u : 0.04	a : 0.02	
U : 0.78	A : 0.10	u : 0.06	G : 0.06	
A : 0.84	U : 0.08	a : 0.06	G : 0.02	
A : 0.76	C : 0.08	a : 0.06	G : 0.06	U : 0.04	
U : 0.72	A : 0.10	C : 0.06	G : 0.06	u : 0.04	c : 0.02	
U : 0.80	u : 0.08	A : 0.08	C : 0.04	
U : 0.84	u : 0.08	G : 0.04	A : 0.04	
U : 0.86	u : 0.06	G : 0.04	c : 0.02	C : 0.02	
U : 0.78	u : 0.06	A : 0.06	G : 0.04	C : 0.04	a : 0.02	
U : 0.54	A : 0.19	C : 0.10	u : 0.08	G : 0.08	

#score	774.8000000000009
#seq	50
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_CDS_m2_run2.nuc.txt

#NT
GUGG	chr14:35099049-35099318(-)$1	269	2	6	12.0000
GUGG	chrM:14367-14600(-)$1	233	34	38	12.0000
GUGG	chrX:153668587-153668866(+)$1	279	71	75	12.0000
GUGG	chr17:80016426-80016720(-)$1	294	50	54	12.0000
GUGG	chr17:74381954-74382203(+)$1	249	57	61	12.0000
GUGG	chr20:56138169-56138419(+)$1	250	1	5	12.0000
GUGG	chr1:43212718-43212989(-)$1	271	13	17	12.0000
GUGG	chr11:70265862-70266136(+)$1	274	36	40	12.0000
GUGG	chrM:14282-14501(-)$1	219	106	110	12.0000
GUGG	chr20:61452781-61453044(+)$1	263	188	192	12.0000
GUGG	chr17:73871336-73871584(-)$1	248	108	112	12.0000
gugg	chr19:1978465-1978720(+)$1	255	63	67	12.0000
GUGG	chr20:2819566-2819827(-)$1	261	4	8	12.0000
GUGG	chr20:56136586-56136834(+)$1	248	174	178	12.0000
GUGG	chr9:139904666-139904966(-)$1	300	6	10	12.0000
GUGG	chr7:73010686-73010948(-)$1	262	114	118	12.0000
GUGG	chr20:60856116-60856361(+)$1	245	63	67	12.0000
GUGG	chr3:48451382-48451604(-)$1	222	75	79	12.0000
GUGG	chr16:67983707-67984038(-)$1	331	59	63	12.0000
GUGG	chrM:14301-14514(-)$1	213	119	123	12.0000
GUGG	chr3:5021991-5022271(+)$1	280	221	225	12.0000
GUGG	chr2:128180682-128180991(+)$1	309	78	82	12.0000
GUGG	chr17:7010948-7011255(-)$1	307	37	41	12.0000
GUGG	chr9:135930323-135930613(+)$1	290	86	90	12.0000
GUGG	chr17:27074221-27074456(+)$1	235	133	137	12.0000
GUGG	chr17:7011759-7012033(-)$1	274	0	4	12.0000
GUGG	chrM:14157-14381(-)$1	224	18	22	12.0000
GUGG	chr17:4686007-4686270(+)$1	263	38	42	12.0000
GUGG	chr19:1012061-1012406(-)$1	345	174	178	12.0000
GUGG	chr7:142962001-142962239(+)$1	238	162	166	12.0000
GUGG	chr7:100282732-100283073(-)$1	341	149	153	12.0000
GUGG	chr20:62373115-62373359(+)$1	244	175	179	12.0000
GUGG	chr6:134493183-134493437(-)$1	254	93	97	12.0000
GUGG	chr19:59059987-59060219(+)$1	232	0	4	12.0000
GUGG	chr16:67984010-67984326(-)$1	316	22	26	12.0000
GUGG	chr1:44442124-44442392(+)$1	268	21	25	12.0000
GUGG	chr7:142962095-142962413(+)$1	318	68	72	12.0000
GUGG	chr2:219267643-219267872(+)$1	229	138	142	12.0000
GUGG	chrM:14222-14435(-)$1	213	40	44	12.0000
GUGG	chr17:79865281-79865532(-)$1	251	5	9	12.0000
GUGG	chrM:14181-14398(-)$1	217	3	7	12.0000
GUGG	chr14:54418396-54418665(-)$1	269	118	122	12.0000
GUGG	chr1:11718308-11718608(+)$1	300	58	62	12.0000
GUGG	chr9:140347388-140347614(-)$1	226	65	69	12.0000
GUGG	chr22:50354825-50355088(+)$1	263	140	144	12.0000
GUGG	chr16:67984709-67984966(-)$1	257	62	66	12.0000
GUGG	chr1:11718441-11718755(+)$1	314	107	111	12.0000
GUGG	chr16:72142227-72142502(+)$1	275	62	66	12.0000
GUGG	chr11:67810675-67810936(+)$1	261	38	42	12.0000
GUGG	chr19:46357608-46357893(-)$1	285	153	157	12.0000
GUGG	chr17:77078044-77078299(+)$1	255	41	45	12.0000
GUGG	chr16:67976993-67977279(-)$1	286	69	73	12.0000
GUGG	chrM:14217-14422(-)$1	205	27	31	12.0000
GUGG	chr3:48451341-48451548(-)$1	207	19	23	12.0000
GUGG	chr1:145441068-145441318(+)$1	250	114	118	12.0000
GUGG	chrM:14235-14449(-)$1	214	54	58	12.0000
GUGG	chrM:14213-14417(-)$1	204	22	26	12.0000

#otherMatches

#Struct PSSM
]ccc	chr11:721152-721409(+)$1	257	23	27	12.0000
eee[	chr14:35099049-35099318(-)$1	269	2	6	12.0000
ooob	chrM:14367-14600(-)$1	233	34	38	12.0000
[ddd	chrX:153668587-153668866(+)$1	279	71	75	12.0000
LBB{	chr17:80016426-80016720(-)$1	294	50	54	12.0000
hhhh	chr17:74381954-74382203(+)$1	249	57	61	12.0000
CC{A	chr20:56138169-56138419(+)$1	250	1	5	12.0000
::ff	chr1:43212718-43212989(-)$1	271	13	17	12.0000
bb]d	chr11:70265862-70266136(+)$1	274	36	40	12.0000
i333	chrM:14282-14501(-)$1	219	106	110	12.0000
e[hh	chr20:61452781-61453044(+)$1	263	188	192	12.0000
ffff	chr17:73871336-73871584(-)$1	248	108	112	12.0000
FFFF	chr19:1978465-1978720(+)$1	255	63	67	12.0000
DDDe	chr20:2819566-2819827(-)$1	261	4	8	12.0000
YYA}	chr20:56136586-56136834(+)$1	248	174	178	12.0000
cc""	chr9:139904666-139904966(-)$1	300	6	10	12.0000
dd##	chr7:73010686-73010948(-)$1	262	114	118	12.0000
gggg	chr20:60856116-60856361(+)$1	245	63	67	12.0000
b]ii	chr3:48451382-48451604(-)$1	222	75	79	12.0000
ddd!	chr16:67983707-67984038(-)$1	331	59	63	12.0000
i333	chrM:14301-14514(-)$1	213	119	123	12.0000
DDBB	chr3:5021991-5022271(+)$1	280	221	225	12.0000
DD{A	chr2:128180682-128180991(+)$1	309	78	82	12.0000
NNNN	chr17:7010948-7011255(-)$1	307	37	41	12.0000
ffff	chr9:135930323-135930613(+)$1	290	86	90	12.0000
IIII	chr17:27074221-27074456(+)$1	235	133	137	12.0000
:::b	chr17:7011759-7012033(-)$1	274	0	4	12.0000
[app	chrM:14157-14381(-)$1	224	18	22	12.0000
eeee	chr17:4686007-4686270(+)$1	263	38	42	12.0000
dddd	chr19:1012061-1012406(-)$1	345	174	178	12.0000
]ggg	chr7:142962001-142962239(+)$1	238	162	166	12.0000
eeee	chr7:100282732-100283073(-)$1	341	149	153	12.0000
ffff	chr20:62373115-62373359(+)$1	244	175	179	12.0000
dddd	chr6:134493183-134493437(-)$1	254	93	97	12.0000
:eee	chr19:59059987-59060219(+)$1	232	0	4	12.0000
c[cc	chr16:67984010-67984326(-)$1	316	22	26	12.0000
eeCC	chr1:44442124-44442392(+)$1	268	21	25	12.0000
]aFF	chr7:142962095-142962413(+)$1	318	68	72	12.0000
iiii	chr2:219267643-219267872(+)$1	229	138	142	12.0000
ff##	chrM:14222-14435(-)$1	213	40	44	12.0000
f[dd	chr17:79865281-79865532(-)$1	251	5	9	12.0000
:ggg	chrM:14181-14398(-)$1	217	3	7	12.0000
piii	chr14:54418396-54418665(-)$1	269	118	122	12.0000
A{BB	chr1:11718308-11718608(+)$1	300	58	62	12.0000
mmmd	chr9:140347388-140347614(-)$1	226	65	69	12.0000
mmmm	chr22:50354825-50355088(+)$1	263	140	144	12.0000
mmmd	chr16:67984709-67984966(-)$1	257	62	66	12.0000
ffff	chr1:11718441-11718755(+)$1	314	107	111	12.0000
ee55	chr16:72142227-72142502(+)$1	275	62	66	12.0000
55==	chr11:67810675-67810936(+)$1	261	38	42	12.0000
C}CC	chr19:46357608-46357893(-)$1	285	153	157	12.0000
cc]c	chr17:77078044-77078299(+)$1	255	41	45	12.0000
DDDD	chr16:67976993-67977279(-)$1	286	69	73	12.0000
ff##	chrM:14217-14422(-)$1	205	27	31	12.0000
::::	chr3:48451341-48451548(-)$1	207	19	23	12.0000
ccc!	chr1:145441068-145441318(+)$1	250	114	118	12.0000
ff##	chrM:14235-14449(-)$1	214	54	58	12.0000
ff##	chrM:14213-14417(-)$1	204	22	26	12.0000

#DB
.)))	chr11:721152-721409(+)$1	1	23	27	12.0000
(((.	chr14:35099049-35099318(-)$1	1	2	6	12.0000
...)	chrM:14367-14600(-)$1	1	34	38	12.0000
.(((	chrX:153668587-153668866(+)$1	1	71	75	12.0000
.((.	chr17:80016426-80016720(-)$1	1	50	54	12.0000
((((	chr17:74381954-74382203(+)$1	1	57	61	12.0000
((.(	chr20:56138169-56138419(+)$1	1	1	5	12.0000
..((	chr1:43212718-43212989(-)$1	1	13	17	12.0000
)).)	chr11:70265862-70266136(+)$1	1	36	40	12.0000
)...	chrM:14282-14501(-)$1	1	106	110	12.0000
(.((	chr20:61452781-61453044(+)$1	1	188	192	12.0000
((((	chr17:73871336-73871584(-)$1	1	108	112	12.0000
((((	chr19:1978465-1978720(+)$1	1	63	67	12.0000
((((	chr20:2819566-2819827(-)$1	1	4	8	12.0000
..).	chr20:56136586-56136834(+)$1	1	174	178	12.0000
((..	chr9:139904666-139904966(-)$1	1	6	10	12.0000
((..	chr7:73010686-73010948(-)$1	1	114	118	12.0000
))))	chr20:60856116-60856361(+)$1	1	63	67	12.0000
).))	chr3:48451382-48451604(-)$1	1	75	79	12.0000
(((.	chr16:67983707-67984038(-)$1	1	59	63	12.0000
)...	chrM:14301-14514(-)$1	1	119	123	12.0000
))))	chr3:5021991-5022271(+)$1	1	221	225	12.0000
((.(	chr2:128180682-128180991(+)$1	1	78	82	12.0000
....	chr17:7010948-7011255(-)$1	1	37	41	12.0000
((((	chr9:135930323-135930613(+)$1	1	86	90	12.0000
))))	chr17:27074221-27074456(+)$1	1	133	137	12.0000
...(	chr17:7011759-7012033(-)$1	1	0	4	12.0000
.(..	chrM:14157-14381(-)$1	1	18	22	12.0000
))))	chr17:4686007-4686270(+)$1	1	38	42	12.0000
))))	chr19:1012061-1012406(-)$1	1	174	178	12.0000
.)))	chr7:142962001-142962239(+)$1	1	162	166	12.0000
((((	chr7:100282732-100283073(-)$1	1	149	153	12.0000
((((	chr20:62373115-62373359(+)$1	1	175	179	12.0000
))))	chr6:134493183-134493437(-)$1	1	93	97	12.0000
.(((	chr19:59059987-59060219(+)$1	1	0	4	12.0000
(.((	chr16:67984010-67984326(-)$1	1	22	26	12.0000
))((	chr1:44442124-44442392(+)$1	1	21	25	12.0000
.)((	chr7:142962095-142962413(+)$1	1	68	72	12.0000
))))	chr2:219267643-219267872(+)$1	1	138	142	12.0000
((..	chrM:14222-14435(-)$1	1	40	44	12.0000
(.((	chr17:79865281-79865532(-)$1	1	5	9	12.0000
.(((	chrM:14181-14398(-)$1	1	3	7	12.0000
.)))	chr14:54418396-54418665(-)$1	1	118	122	12.0000
(.((	chr1:11718308-11718608(+)$1	1	58	62	12.0000
...)	chr9:140347388-140347614(-)$1	1	65	69	12.0000
....	chr22:50354825-50355088(+)$1	1	140	144	12.0000
...)	chr16:67984709-67984966(-)$1	1	62	66	12.0000
((((	chr1:11718441-11718755(+)$1	1	107	111	12.0000
))..	chr16:72142227-72142502(+)$1	1	62	66	12.0000
..))	chr11:67810675-67810936(+)$1	1	38	42	12.0000
).))	chr19:46357608-46357893(-)$1	1	153	157	12.0000
)).)	chr17:77078044-77078299(+)$1	1	41	45	12.0000
((((	chr16:67976993-67977279(-)$1	1	69	73	12.0000
((..	chrM:14217-14422(-)$1	1	27	31	12.0000
....	chr3:48451341-48451548(-)$1	1	19	23	12.0000
(((.	chr1:145441068-145441318(+)$1	1	114	118	12.0000
((..	chrM:14235-14449(-)$1	1	54	58	12.0000
((..	chrM:14213-14417(-)$1	1	22	26	12.0000

#PSSM
G : 0.98	g : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	

#score	696.0000000000001
#seq	58
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_CDS_m1_run2.nuc.txt

#NT
UUUAAUAGU	chrM:14159-14377(-)$1	218	54	63	13.2162
ACUAAUAUU	chrM:9834-10051(+)$1	217	38	47	17.4054
CCUAAUACU	chrM:10792-11004(+)$1	212	162	171	14.5675
ACUAAUAAU	chrM:5335-5594(+)$1	259	163	172	17.4054
ACUAAUAAU	chrM:5311-5535(+)$1	224	187	196	17.4054
ACUAAUAUU	chrM:9799-10034(+)$1	235	73	82	17.4054
ACUAAUCGU	chrM:10710-10947(+)$1	237	58	67	16.7297
UUUAAUAGU	chrM:14252-14494(-)$1	242	171	180	13.2162
ACUCAUAAU	chrM:13132-13377(+)$1	245	137	146	13.2162
ACUAAUCGU	chrM:10747-10956(+)$1	209	21	30	16.7297
CCUAAUACU	chrM:10804-11048(+)$1	244	150	159	14.5675
ACUAAUAUU	chrM:9779-9999(+)$1	220	93	102	17.4054
ACCAAUGGU	chrM:7777-7983(+)$1	206	113	122	13.3513
ACUAAUAGU	chrM:10148-10372(+)$1	224	165	174	19.5675
AAUAAUACU	chrM:10540-10763(+)$1	223	34	43	13.7567
CCUAAUAGU	chrM:7246-7454(+)$1	208	103	112	16.5945
ACUAAUAGU	chrM:10172-10406(+)$1	234	141	150	19.5675
ACUAAUGCU	chr4:110745473-110745739(+)$1	266	8	17	14.9729
ACCAAUGGU	chrM:7804-8041(+)$1	237	86	95	13.3513
ACUAAAAAU	chrM:8440-8650(+)$1	210	0	9	12.6756
UUUAAUAGU	chrM:14177-14400(-)$1	223	77	86	13.2162
ACUCAUAAU	chrM:13177-13404(+)$1	227	92	101	13.2162
UUUAAUAGU	chrM:14203-14422(-)$1	219	99	108	13.2162
ACCAAUGGU	chrM:7783-7993(+)$1	210	107	116	13.3513
ACUAAUAGU	chrM:10206-10416(+)$1	210	107	116	19.5675
ACUAAUCUU	chrM:7926-8134(+)$1	208	4	13	14.5675
ACCAAUGGU	chrM:7793-8004(+)$1	211	97	106	13.3513
ACUGAUUGU	chrM:14383-14601(-)$1	218	19	28	12.2702
ACUGAUUGU	chrM:14362-14583(-)$1	221	1	10	12.2702
AAUAAUACU	chrM:10525-10740(+)$1	215	49	58	13.7567
CCUAAUAGU	chrM:7212-7446(+)$1	234	137	146	16.5945
ACUAAUAGU	chrM:10126-10348(+)$1	222	187	196	19.5675
ACUAAUCGU	chrM:10756-10983(+)$1	227	12	21	16.7297
ACUAAUAUU	chrM:9720-9938(+)$1	218	152	161	17.4054
CCUAAUACU	chrM:10783-10991(+)$1	208	171	180	14.5675
ACCAAUGGU	chrM:7742-7977(+)$1	235	148	157	13.3513

#otherMatches

#Struct PSSM
eee4444bb	chrM:14222-14444(-)$1	222	121	130	13.2162
d:::HHHHH	chrM:14159-14377(-)$1	218	54	63	13.2162
DDDD:::::	chrM:9834-10051(+)$1	217	38	47	17.4054
:::::::::	chrM:10792-11004(+)$1	212	162	171	14.5675
gssssssss	chrM:5335-5594(+)$1	259	163	172	17.4054
:::::::::	chrM:5311-5535(+)$1	224	187	196	17.4054
:::::::::	chrM:9799-10034(+)$1	235	73	82	17.4054
:::::::CC	chrM:10710-10947(+)$1	237	58	67	16.7297
eee4444bb	chrM:14252-14494(-)$1	242	171	180	13.2162
ddd666666	chrM:13132-13377(+)$1	245	137	146	13.2162
:::::::cc	chrM:10747-10956(+)$1	209	21	30	16.7297
:::::::::	chrM:10804-11048(+)$1	244	150	159	14.5675
e]dddd:::	chrM:9779-9999(+)$1	220	93	102	17.4054
leeeee:ee	chrM:7777-7983(+)$1	206	113	122	13.3513
88=======	chrM:10148-10372(+)$1	224	165	174	19.5675
:::::::::	chrM:10540-10763(+)$1	223	34	43	13.7567
dd!!eeeee	chrM:7246-7454(+)$1	208	103	112	16.5945
##ffffffw	chrM:10172-10406(+)$1	234	141	150	19.5675
::::HHHHH	chr4:110745473-110745739(+)$1	266	8	17	14.9729
leeeee:ee	chrM:7804-8041(+)$1	237	86	95	13.3513
:::::::::	chrM:8440-8650(+)$1	210	0	9	12.6756
ggggGGGGG	chrM:14177-14400(-)$1	223	77	86	13.2162
FFFF:::::	chrM:13177-13404(+)$1	227	92	101	13.2162
eee4444bb	chrM:14203-14422(-)$1	219	99	108	13.2162
leeeee:ee	chrM:7783-7993(+)$1	210	107	116	13.3513
##ffffffw	chrM:10206-10416(+)$1	210	107	116	19.5675
ENNNNNFFF	chrM:7926-8134(+)$1	208	4	13	14.5675
leeeee:ee	chrM:7793-8004(+)$1	211	97	106	13.3513
KFFFFFF{C	chrM:14383-14601(-)$1	218	19	28	12.2702
:::::::::	chrM:14362-14583(-)$1	221	1	10	12.2702
:::::::::	chrM:10525-10740(+)$1	215	49	58	13.7567
dd!!eeeee	chrM:7212-7446(+)$1	234	137	146	16.5945
uuuuueeee	chrM:10126-10348(+)$1	222	187	196	19.5675
:::::::cc	chrM:10756-10983(+)$1	227	12	21	16.7297
e]dddd:::	chrM:9720-9938(+)$1	218	152	161	17.4054
:::::::::	chrM:10783-10991(+)$1	208	171	180	14.5675
leeeee:ee	chrM:7742-7977(+)$1	235	148	157	13.3513

#DB
)))....))	chrM:14222-14444(-)$1	1	121	130	13.2162
)...(((((	chrM:14159-14377(-)$1	1	54	63	13.2162
((((.....	chrM:9834-10051(+)$1	1	38	47	17.4054
.........	chrM:10792-11004(+)$1	1	162	171	14.5675
(........	chrM:5335-5594(+)$1	1	163	172	17.4054
.........	chrM:5311-5535(+)$1	1	187	196	17.4054
.........	chrM:9799-10034(+)$1	1	73	82	17.4054
.......((	chrM:10710-10947(+)$1	1	58	67	16.7297
)))....))	chrM:14252-14494(-)$1	1	171	180	13.2162
)))......	chrM:13132-13377(+)$1	1	137	146	13.2162
.......((	chrM:10747-10956(+)$1	1	21	30	16.7297
.........	chrM:10804-11048(+)$1	1	150	159	14.5675
).))))...	chrM:9779-9999(+)$1	1	93	102	17.4054
.))))).((	chrM:7777-7983(+)$1	1	113	122	13.3513
..)))))))	chrM:10148-10372(+)$1	1	165	174	19.5675
.........	chrM:10540-10763(+)$1	1	34	43	13.7567
((..(((((	chrM:7246-7454(+)$1	1	103	112	16.5945
..((((((.	chrM:10172-10406(+)$1	1	141	150	19.5675
....(((((	chr4:110745473-110745739(+)$1	1	8	17	14.9729
.))))).((	chrM:7804-8041(+)$1	1	86	95	13.3513
.........	chrM:8440-8650(+)$1	1	0	9	12.6756
))))(((((	chrM:14177-14400(-)$1	1	77	86	13.2162
((((.....	chrM:13177-13404(+)$1	1	92	101	13.2162
)))....))	chrM:14203-14422(-)$1	1	99	108	13.2162
.))))).((	chrM:7783-7993(+)$1	1	107	116	13.3513
..((((((.	chrM:10206-10416(+)$1	1	107	116	19.5675
(.....(((	chrM:7926-8134(+)$1	1	4	13	14.5675
.))))).((	chrM:7793-8004(+)$1	1	97	106	13.3513
.((((((.(	chrM:14383-14601(-)$1	1	19	28	12.2702
.........	chrM:14362-14583(-)$1	1	1	10	12.2702
.........	chrM:10525-10740(+)$1	1	49	58	13.7567
((..(((((	chrM:7212-7446(+)$1	1	137	146	16.5945
.....))))	chrM:10126-10348(+)$1	1	187	196	19.5675
.......((	chrM:10756-10983(+)$1	1	12	21	16.7297
).))))...	chrM:9720-9938(+)$1	1	152	161	17.4054
.........	chrM:10783-10991(+)$1	1	171	180	14.5675
.))))).((	chrM:7742-7977(+)$1	1	148	157	13.3513

#PSSM
A : 0.72	U : 0.13	C : 0.13	
C : 0.81	U : 0.13	A : 0.05	
U : 0.86	C : 0.13	
A : 0.89	C : 0.05	G : 0.05	
A : 0.99	
U : 0.97	A : 0.02	
A : 0.67	G : 0.16	C : 0.10	U : 0.05	
G : 0.56	C : 0.16	U : 0.13	A : 0.13	
U : 0.99	

#score	563.324324324324
#seq	37
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF322GPD_SF3B1_UTR_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
CCCLLLFFFFFF:::::ffffffqqqqqqqqffffff:ffffffnnnnnffffff:::::::::::::DDDDKKA{EEEEE:dddd[dddd"""ddddmmmmdddd]dddddddd::ffffff[eeeeevvvvvvvvvvvvveeeee22ffffff:gggggggmmmmggggggg:::::eeeeemmmmeeeee:::EEEEE}AYYDDDD}FF	chr11:62609026-62609260(-)$1	234	8	220	636.0000

#DB
(((...((((((.....((((((........)))))).((((((.....)))))).............((((..(.(((((.((((.((((...((((....)))).))))))))..((((((.(((((.............)))))..)))))).(((((((....))))))).....(((((....)))))...))))).)..)))).))	chr11:62609026-62609260(-)$1	1	8	220	636.0000

#PSSM
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	

#score	636.0
#seq	1
#width	212
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_CDS_m2_run1.nuc.txt

#NT
CCA	chr11:62285988-62286229(-)$1	241	19	22	9.0000
CCA	chr2:61575426-61575715(-)$1	289	104	107	9.0000
CCA	chr11:34107568-34107843(+)$1	275	56	59	9.0000
CCA	chr20:25459602-25459925(-)$1	323	56	59	9.0000
CCA	chr7:11022081-11022464(+)$1	383	253	256	9.0000
CCA	chr4:73959695-73959955(-)$1	260	29	32	9.0000
CCA	chr8:48749689-48749946(-)$1	257	109	112	9.0000
CCA	chr19:47440541-47440766(+)$1	225	0	3	9.0000
CCA	chr1:146756979-146757265(+)$1	286	30	33	9.0000
CCA	chr19:57328045-57328303(-)$1	258	136	139	9.0000
CCA	chr16:2814012-2814350(+)$1	338	87	90	9.0000
CCA	chr6:56496707-56496937(-)$1	230	8	11	9.0000
CCA	chr2:44152976-44153199(-)$1	223	102	105	9.0000
CCA	chr2:198263128-198263392(-)$1	264	104	107	9.0000
CCA	chr10:120796602-120796855(-)$1	253	59	62	9.0000
CCA	chr17:78306029-78306300(+)$1	271	8	11	9.0000
CCA	chr6:90399689-90399953(-)$1	264	115	118	9.0000
CCA	chr17:27420244-27420541(-)$1	297	23	26	9.0000
CCA	chrX:41091582-41091861(+)$1	279	53	56	9.0000
CCA	chr7:151902090-151902351(-)$1	261	92	95	9.0000
CCA	chr1:214816312-214816636(+)$1	324	1	4	9.0000
CCA	chr9:71849273-71849519(+)$1	246	163	166	9.0000
CCA	chr16:8989491-8989697(-)$1	206	34	37	9.0000
CCA	chr17:1563148-1563392(-)$1	244	81	84	9.0000
CCA	chr14:56116965-56117235(+)$1	270	83	86	9.0000
CCA	chr2:211507200-211507487(+)$1	287	179	182	9.0000
CCA	chr17:42286912-42287202(-)$1	290	14	17	9.0000
CCA	chr14:31619233-31619474(-)$1	241	15	18	9.0000
CCA	chr12:26703080-26703315(-)$1	235	183	186	9.0000
CCA	chr12:133353127-133353440(-)$1	313	17	20	9.0000
CCA	chr1:39750664-39750900(+)$1	236	224	227	9.0000
CCA	chr17:65905769-65905978(+)$1	209	61	64	9.0000
CCA	chr5:14336632-14336914(+)$1	282	22	25	9.0000
CCA	chr17:26948342-26948603(-)$1	261	23	26	9.0000
CCA	chr21:16340287-16340539(-)$1	252	61	64	9.0000
CCA	chr1:214818190-214818471(+)$1	281	29	32	9.0000
CCA	chr3:121400435-121400697(-)$1	262	51	54	9.0000
CCA	chr19:47423560-47423844(+)$1	284	27	30	9.0000
CCA	chr5:98217585-98217855(-)$1	270	169	172	9.0000
CCA	chr20:25442926-25443166(-)$1	240	15	18	9.0000
CCA	chr1:11264518-11264828(-)$1	310	44	47	9.0000
CCA	chr2:54155322-54155540(-)$1	218	136	139	9.0000
CCA	chr20:36374769-36374998(+)$1	229	156	159	9.0000
CCA	chr2:54133695-54133930(-)$1	235	34	37	9.0000
CCA	chr12:101764746-101765001(+)$1	255	32	35	9.0000
CCA	chr19:57325209-57325490(-)$1	281	16	19	9.0000
CCA	chr2:54873235-54873468(+)$1	233	54	57	9.0000
CCA	chr18:2802434-2802731(+)$1	297	87	90	9.0000
CCA	chr12:6626844-6627099(+)$1	255	35	38	9.0000
CCA	chr15:86128868-86129143(+)$1	275	69	72	9.0000
CCA	chr2:170493738-170494031(+)$1	293	140	143	9.0000
CCA	chr21:38560774-38560996(+)$1	222	176	179	9.0000
CCA	chr14:91927819-91928051(-)$1	232	159	162	9.0000
CCA	chr6:56366292-56366591(-)$1	299	30	33	9.0000
CCA	chr2:54858493-54858708(+)$1	215	44	47	9.0000
CCA	chr9:131345386-131345611(+)$1	225	34	37	9.0000
CCA	chr6:7579537-7579789(+)$1	252	25	28	9.0000
CCA	chr3:184042974-184043186(+)$1	212	105	108	9.0000
CCA	chr2:44126365-44126574(-)$1	209	30	33	9.0000
CCA	chr8:144996628-144996875(-)$1	247	46	49	9.0000
CCA	chr1:19464400-19464667(-)$1	267	48	51	9.0000
CCA	chr8:144992971-144993304(-)$1	333	52	55	9.0000
CCA	chr3:47677411-47677648(-)$1	237	128	131	9.0000
CCA	chr1:171501893-171502199(+)$1	306	144	147	9.0000
CCA	chr7:5364626-5364834(-)$1	208	28	31	9.0000
CCA	chr4:123237845-123238105(+)$1	260	45	48	9.0000
CCA	chr17:1559844-1560073(-)$1	229	85	88	9.0000
CCA	chr8:17869148-17869435(+)$1	287	130	133	9.0000
CCA	chr21:34923560-34923845(+)$1	285	107	110	9.0000
CCA	chr16:50368533-50368838(-)$1	305	198	201	9.0000
CCA	chrX:53588733-53588974(-)$1	241	24	27	9.0000
CCA	chr2:100013180-100013415(+)$1	235	158	161	9.0000
CCA	chr14:103433331-103433595(-)$1	264	17	20	9.0000
CCA	chr2:54856165-54856425(+)$1	260	117	120	9.0000
CCA	chr2:11351762-11352066(-)$1	304	132	135	9.0000
CCA	chr19:57325052-57325295(-)$1	243	6	9	9.0000
cca	chr3:123366035-123366374(-)$1	339	6	9	9.0000
CCA	chr7:97822785-97823052(+)$1	267	6	9	9.0000
CCA	chr2:230656480-230656754(-)$1	274	109	112	9.0000
CCA	chr5:70806419-70806657(+)$1	238	124	127	9.0000
CCA	chr17:1586806-1587040(-)$1	234	41	44	9.0000
CCA	chr21:40568498-40568772(-)$1	274	241	244	9.0000
CCA	chr12:49437600-49437868(-)$1	268	81	84	9.0000
CCA	chr2:232327842-232328099(-)$1	257	63	66	9.0000
CCA	chr5:96097886-96098177(+)$1	291	119	122	9.0000
CCA	chr2:61632755-61632981(-)$1	226	174	177	9.0000
CCA	chr2:54859774-54860005(+)$1	231	10	13	9.0000
CCA	chr1:214818647-214818903(+)$1	256	148	151	9.0000
CCA	chr17:74392465-74392743(-)$1	278	1	4	9.0000
CCA	chr14:21825264-21825518(-)$1	254	31	34	9.0000
CCA	chr17:38551600-38551833(-)$1	233	16	19	9.0000
CCA	chr12:122803694-122803996(-)$1	302	123	126	9.0000
CCA	chr8:17511992-17512268(-)$1	276	68	71	9.0000
CCA	chr14:31598130-31598355(-)$1	225	44	47	9.0000
CCA	chr14:71444449-71444766(+)$1	317	38	41	9.0000
CCA	chr1:39822987-39823274(+)$1	287	55	58	9.0000
CCA	chr4:144468460-144468746(+)$1	286	2	5	9.0000

#otherMatches

#Struct PSSM
###	chr9:114140855-114141096(-)$1	241	72	75	9.0000
III	chr11:62285988-62286229(-)$1	241	19	22	9.0000
cco	chr2:61575426-61575715(-)$1	289	104	107	9.0000
+++	chr11:34107568-34107843(+)$1	275	56	59	9.0000
b""	chr20:25459602-25459925(-)$1	323	56	59	9.0000
b88	chr7:11022081-11022464(+)$1	383	253	256	9.0000
eee	chr4:73959695-73959955(-)$1	260	29	32	9.0000
{CC	chr8:48749689-48749946(-)$1	257	109	112	9.0000
:::	chr19:47440541-47440766(+)$1	225	0	3	9.0000
ddd	chr1:146756979-146757265(+)$1	286	30	33	9.0000
$$$	chr19:57328045-57328303(-)$1	258	136	139	9.0000
cco	chr16:2814012-2814350(+)$1	338	87	90	9.0000
&&&	chr6:56496707-56496937(-)$1	230	8	11	9.0000
ggg	chr2:44152976-44153199(-)$1	223	102	105	9.0000
:::	chr2:198263128-198263392(-)$1	264	104	107	9.0000
fff	chr10:120796602-120796855(-)$1	253	59	62	9.0000
CCC	chr17:78306029-78306300(+)$1	271	8	11	9.0000
eee	chr6:90399689-90399953(-)$1	264	115	118	9.0000
ccr	chr17:27420244-27420541(-)$1	297	23	26	9.0000
:::	chrX:41091582-41091861(+)$1	279	53	56	9.0000
'''	chr7:151902090-151902351(-)$1	261	92	95	9.0000
cco	chr1:214816312-214816636(+)$1	324	1	4	9.0000
hhh	chr9:71849273-71849519(+)$1	246	163	166	9.0000
eee	chr16:8989491-8989697(-)$1	206	34	37	9.0000
ddd	chr17:1563148-1563392(-)$1	244	81	84	9.0000
III	chr14:56116965-56117235(+)$1	270	83	86	9.0000
ccp	chr2:211507200-211507487(+)$1	287	179	182	9.0000
cc[	chr17:42286912-42287202(-)$1	290	14	17	9.0000
iid	chr14:31619233-31619474(-)$1	241	15	18	9.0000
]cc	chr12:26703080-26703315(-)$1	235	183	186	9.0000
ddd	chr12:133353127-133353440(-)$1	313	17	20	9.0000
EEE	chr1:39750664-39750900(+)$1	236	224	227	9.0000
ccc	chr17:65905769-65905978(+)$1	209	61	64	9.0000
:::	chr5:14336632-14336914(+)$1	282	22	25	9.0000
BB:	chr17:26948342-26948603(-)$1	261	23	26	9.0000
&&&	chr21:16340287-16340539(-)$1	252	61	64	9.0000
fff	chr1:214818190-214818471(+)$1	281	29	32	9.0000
cc!	chr3:121400435-121400697(-)$1	262	51	54	9.0000
ddd	chr19:47423560-47423844(+)$1	284	27	30	9.0000
D:f	chr5:98217585-98217855(-)$1	270	169	172	9.0000
GGG	chr20:25442926-25443166(-)$1	240	15	18	9.0000
III	chr1:11264518-11264828(-)$1	310	44	47	9.0000
eee	chr2:54155322-54155540(-)$1	218	136	139	9.0000
mme	chr20:36374769-36374998(+)$1	229	156	159	9.0000
:::	chr2:54133695-54133930(-)$1	235	34	37	9.0000
B{D	chr12:101764746-101765001(+)$1	255	32	35	9.0000
bbo	chr19:57325209-57325490(-)$1	281	16	19	9.0000
boo	chr2:54873235-54873468(+)$1	233	54	57	9.0000
###	chr18:2802434-2802731(+)$1	297	87	90	9.0000
ccn	chr12:6626844-6627099(+)$1	255	35	38	9.0000
'''	chr15:86128868-86129143(+)$1	275	69	72	9.0000
gg[	chr2:170493738-170494031(+)$1	293	140	143	9.0000
bb$	chr21:38560774-38560996(+)$1	222	176	179	9.0000
ttt	chr14:91927819-91928051(-)$1	232	159	162	9.0000
!cc	chr6:56366292-56366591(-)$1	299	30	33	9.0000
777	chr2:54858493-54858708(+)$1	215	44	47	9.0000
55f	chr9:131345386-131345611(+)$1	225	34	37	9.0000
ppp	chr6:7579537-7579789(+)$1	252	25	28	9.0000
:::	chr3:184042974-184043186(+)$1	212	105	108	9.0000
fff	chr2:44126365-44126574(-)$1	209	30	33	9.0000
bbn	chr8:144996628-144996875(-)$1	247	46	49	9.0000
bb]	chr1:19464400-19464667(-)$1	267	48	51	9.0000
B{C	chr8:144992971-144993304(-)$1	333	52	55	9.0000
ddo	chr3:47677411-47677648(-)$1	237	128	131	9.0000
!aa	chr1:171501893-171502199(+)$1	306	144	147	9.0000
]dd	chr7:5364626-5364834(-)$1	208	28	31	9.0000
DDD	chr4:123237845-123238105(+)$1	260	45	48	9.0000
dd^	chr17:1559844-1560073(-)$1	229	85	88	9.0000
[bb	chr8:17869148-17869435(+)$1	287	130	133	9.0000
##d	chr21:34923560-34923845(+)$1	285	107	110	9.0000
d::	chr16:50368533-50368838(-)$1	305	198	201	9.0000
CCC	chrX:53588733-53588974(-)$1	241	24	27	9.0000
ooo	chr2:100013180-100013415(+)$1	235	158	161	9.0000
:::	chr14:103433331-103433595(-)$1	264	17	20	9.0000
[cc	chr2:54856165-54856425(+)$1	260	117	120	9.0000
:::	chr2:11351762-11352066(-)$1	304	132	135	9.0000
[ee	chr19:57325052-57325295(-)$1	243	6	9	9.0000
CCJ	chr3:123366035-123366374(-)$1	339	6	9	9.0000
F::	chr7:97822785-97823052(+)$1	267	6	9	9.0000
ccc	chr2:230656480-230656754(-)$1	274	109	112	9.0000
ddd	chr5:70806419-70806657(+)$1	238	124	127	9.0000
hh:	chr17:1586806-1587040(-)$1	234	41	44	9.0000
===	chr21:40568498-40568772(-)$1	274	241	244	9.0000
MMM	chr12:49437600-49437868(-)$1	268	81	84	9.0000
2==	chr2:232327842-232328099(-)$1	257	63	66	9.0000
CC:	chr5:96097886-96098177(+)$1	291	119	122	9.0000
ttt	chr2:61632755-61632981(-)$1	226	174	177	9.0000
nnn	chr2:54859774-54860005(+)$1	231	10	13	9.0000
ddd	chr1:214818647-214818903(+)$1	256	148	151	9.0000
EEE	chr17:74392465-74392743(-)$1	278	1	4	9.0000
dd[	chr14:21825264-21825518(-)$1	254	31	34	9.0000
ddd	chr17:38551600-38551833(-)$1	233	16	19	9.0000
f22	chr12:122803694-122803996(-)$1	302	123	126	9.0000
fff	chr8:17511992-17512268(-)$1	276	68	71	9.0000
$$$	chr14:31598130-31598355(-)$1	225	44	47	9.0000
'''	chr14:71444449-71444766(+)$1	317	38	41	9.0000
:::	chr1:39822987-39823274(+)$1	287	55	58	9.0000
CC:	chr4:144468460-144468746(+)$1	286	2	5	9.0000

#DB
...	chr9:114140855-114141096(-)$1	1	72	75	9.0000
(((	chr11:62285988-62286229(-)$1	1	19	22	9.0000
((.	chr2:61575426-61575715(-)$1	1	104	107	9.0000
...	chr11:34107568-34107843(+)$1	1	56	59	9.0000
(..	chr20:25459602-25459925(-)$1	1	56	59	9.0000
)..	chr7:11022081-11022464(+)$1	1	253	256	9.0000
(((	chr4:73959695-73959955(-)$1	1	29	32	9.0000
.((	chr8:48749689-48749946(-)$1	1	109	112	9.0000
...	chr19:47440541-47440766(+)$1	1	0	3	9.0000
(((	chr1:146756979-146757265(+)$1	1	30	33	9.0000
...	chr19:57328045-57328303(-)$1	1	136	139	9.0000
((.	chr16:2814012-2814350(+)$1	1	87	90	9.0000
...	chr6:56496707-56496937(-)$1	1	8	11	9.0000
)))	chr2:44152976-44153199(-)$1	1	102	105	9.0000
...	chr2:198263128-198263392(-)$1	1	104	107	9.0000
(((	chr10:120796602-120796855(-)$1	1	59	62	9.0000
(((	chr17:78306029-78306300(+)$1	1	8	11	9.0000
)))	chr6:90399689-90399953(-)$1	1	115	118	9.0000
((.	chr17:27420244-27420541(-)$1	1	23	26	9.0000
...	chrX:41091582-41091861(+)$1	1	53	56	9.0000
...	chr7:151902090-151902351(-)$1	1	92	95	9.0000
((.	chr1:214816312-214816636(+)$1	1	1	4	9.0000
(((	chr9:71849273-71849519(+)$1	1	163	166	9.0000
)))	chr16:8989491-8989697(-)$1	1	34	37	9.0000
(((	chr17:1563148-1563392(-)$1	1	81	84	9.0000
)))	chr14:56116965-56117235(+)$1	1	83	86	9.0000
((.	chr2:211507200-211507487(+)$1	1	179	182	9.0000
((.	chr17:42286912-42287202(-)$1	1	14	17	9.0000
(((	chr14:31619233-31619474(-)$1	1	15	18	9.0000
.))	chr12:26703080-26703315(-)$1	1	183	186	9.0000
)))	chr12:133353127-133353440(-)$1	1	17	20	9.0000
)))	chr1:39750664-39750900(+)$1	1	224	227	9.0000
(((	chr17:65905769-65905978(+)$1	1	61	64	9.0000
...	chr5:14336632-14336914(+)$1	1	22	25	9.0000
((.	chr17:26948342-26948603(-)$1	1	23	26	9.0000
...	chr21:16340287-16340539(-)$1	1	61	64	9.0000
)))	chr1:214818190-214818471(+)$1	1	29	32	9.0000
((.	chr3:121400435-121400697(-)$1	1	51	54	9.0000
(((	chr19:47423560-47423844(+)$1	1	27	30	9.0000
).(	chr5:98217585-98217855(-)$1	1	169	172	9.0000
(((	chr20:25442926-25443166(-)$1	1	15	18	9.0000
(((	chr1:11264518-11264828(-)$1	1	44	47	9.0000
(((	chr2:54155322-54155540(-)$1	1	136	139	9.0000
..)	chr20:36374769-36374998(+)$1	1	156	159	9.0000
...	chr2:54133695-54133930(-)$1	1	34	37	9.0000
(.(	chr12:101764746-101765001(+)$1	1	32	35	9.0000
((.	chr19:57325209-57325490(-)$1	1	16	19	9.0000
(..	chr2:54873235-54873468(+)$1	1	54	57	9.0000
...	chr18:2802434-2802731(+)$1	1	87	90	9.0000
((.	chr12:6626844-6627099(+)$1	1	35	38	9.0000
...	chr15:86128868-86129143(+)$1	1	69	72	9.0000
((.	chr2:170493738-170494031(+)$1	1	140	143	9.0000
((.	chr21:38560774-38560996(+)$1	1	176	179	9.0000
...	chr14:91927819-91928051(-)$1	1	159	162	9.0000
.((	chr6:56366292-56366591(-)$1	1	30	33	9.0000
...	chr2:54858493-54858708(+)$1	1	44	47	9.0000
..)	chr9:131345386-131345611(+)$1	1	34	37	9.0000
...	chr6:7579537-7579789(+)$1	1	25	28	9.0000
...	chr3:184042974-184043186(+)$1	1	105	108	9.0000
(((	chr2:44126365-44126574(-)$1	1	30	33	9.0000
((.	chr8:144996628-144996875(-)$1	1	46	49	9.0000
)).	chr1:19464400-19464667(-)$1	1	48	51	9.0000
(.(	chr8:144992971-144993304(-)$1	1	52	55	9.0000
((.	chr3:47677411-47677648(-)$1	1	128	131	9.0000
.((	chr1:171501893-171502199(+)$1	1	144	147	9.0000
.))	chr7:5364626-5364834(-)$1	1	28	31	9.0000
(((	chr4:123237845-123238105(+)$1	1	45	48	9.0000
((.	chr17:1559844-1560073(-)$1	1	85	88	9.0000
.((	chr8:17869148-17869435(+)$1	1	130	133	9.0000
..(	chr21:34923560-34923845(+)$1	1	107	110	9.0000
)..	chr16:50368533-50368838(-)$1	1	198	201	9.0000
(((	chrX:53588733-53588974(-)$1	1	24	27	9.0000
...	chr2:100013180-100013415(+)$1	1	158	161	9.0000
...	chr14:103433331-103433595(-)$1	1	17	20	9.0000
.((	chr2:54856165-54856425(+)$1	1	117	120	9.0000
...	chr2:11351762-11352066(-)$1	1	132	135	9.0000
.((	chr19:57325052-57325295(-)$1	1	6	9	9.0000
(((	chr3:123366035-123366374(-)$1	1	6	9	9.0000
(..	chr7:97822785-97823052(+)$1	1	6	9	9.0000
(((	chr2:230656480-230656754(-)$1	1	109	112	9.0000
(((	chr5:70806419-70806657(+)$1	1	124	127	9.0000
)).	chr17:1586806-1587040(-)$1	1	41	44	9.0000
(((	chr21:40568498-40568772(-)$1	1	241	244	9.0000
...	chr12:49437600-49437868(-)$1	1	81	84	9.0000
.))	chr2:232327842-232328099(-)$1	1	63	66	9.0000
((.	chr5:96097886-96098177(+)$1	1	119	122	9.0000
...	chr2:61632755-61632981(-)$1	1	174	177	9.0000
...	chr2:54859774-54860005(+)$1	1	10	13	9.0000
(((	chr1:214818647-214818903(+)$1	1	148	151	9.0000
(((	chr17:74392465-74392743(-)$1	1	1	4	9.0000
((.	chr14:21825264-21825518(-)$1	1	31	34	9.0000
(((	chr17:38551600-38551833(-)$1	1	16	19	9.0000
)..	chr12:122803694-122803996(-)$1	1	123	126	9.0000
)))	chr8:17511992-17512268(-)$1	1	68	71	9.0000
...	chr14:31598130-31598355(-)$1	1	44	47	9.0000
...	chr14:71444449-71444766(+)$1	1	38	41	9.0000
...	chr1:39822987-39823274(+)$1	1	55	58	9.0000
((.	chr4:144468460-144468746(+)$1	1	2	5	9.0000

#PSSM
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	
A : 0.98	a : 0.01	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_CDS_m2_run1.nuc.txt

#NT
CGCGCCAAGGCCAAG	chr6:27775881-27776120(+)$1	239	139	154	25.8333
CACGCCAAACGCAAG	chr6:26205025-26205291(+)$1	266	72	87	27.9166
CACGCCAAGCGAGUG	chr6:26250269-26250527(-)$1	258	33	48	21.1111
CACGCCAAGCGCAAA	chr6:26104270-26104518(+)$1	248	130	145	27.5000
AAGGCCAAGGGCAAG	chr6:26124737-26124950(+)$1	213	98	113	29.5833
ACCGCCAAGCCCAAG	chr6:26157152-26157367(+)$1	215	72	87	24.7222
AAGGCCAAGGGCAAG	chr1:228645004-228645246(-)$1	242	103	118	29.5833
CGCGCCAAGGCCAAG	chr11:118965898-118966114(-)$1	216	43	58	25.8333
AAGGCGAAGGGCAAG	chr6:27776257-27776474(+)$1	217	105	120	26.3888
AAGGCGAAGGGCAAG	chr6:27101102-27101336(+)$1	234	123	138	26.3888
AAGGCGAAGGGCAAG	chr6:27101136-27101368(+)$1	232	89	104	26.3888
CACGCCAAGCGCAAA	chr6:26104348-26104600(+)$1	252	52	67	27.5000
AAGGCCAAGGGCAAG	chr6:26124687-26124937(+)$1	250	148	163	29.5833
CACGCCAAGCGGGUG	chr6:27778098-27778306(+)$1	208	92	107	21.2500
CACGCCAAGCGGGUG	chr6:27778110-27778356(+)$1	246	80	95	21.2500
CACGCCAAGCGGGUG	chr6:27778156-27778366(+)$1	210	34	49	21.2500
CACGCCAAACGCAAG	chr6:26285310-26285531(-)$1	221	29	44	27.9166
CACGCCAAGCGCGUC	chr6:26020995-26021279(+)$1	284	61	76	20.6944
AAGGCCAAGGGCAAG	chr6:26198977-26199246(-)$1	269	150	165	29.5833
AAGGCCAAGGGCAAG	chr6:26217459-26217694(+)$1	235	118	133	29.5833
CGCGCCAAGGCCAAG	chr6:27114803-27115051(+)$1	248	137	152	25.8333
CACGCCAAGCGCAAG	chr6:27107261-27107520(+)$1	259	51	66	31.8055
CGCGCUAAGGCCAAG	chr6:27100755-27100971(+)$1	216	128	143	22.2222
CACGCCAAGCGAGUG	chr6:26196976-26197224(-)$1	248	85	100	21.1111
CCUGCCAAGCCCAAG	chr6:27834471-27834760(-)$1	289	20	35	22.6388
AAGGCCAAGGGCAAG	chr6:27805558-27805834(-)$1	276	92	107	29.5833
AAGGCAAAGGGCAAG	chr1:149813687-149813993(-)$1	306	103	118	25.8333
ACCGCCAAGCCCAAG	chr6:26157167-26157441(+)$1	274	57	72	24.7222
AAGGCGAAGGGCAAG	chr6:27776274-27776518(+)$1	244	88	103	26.3888
CACGCCAAGCGCAAG	chr6:27798852-27799106(-)$1	254	26	41	31.8055
CACGCCAAACGCAAG	chr6:26188889-26189109(-)$1	220	30	45	27.9166
CGCGCCAAGGCCAAG	chr11:118965970-118966233(-)$1	263	162	177	25.8333
CACGCCAAGCGCAAG	chr6:27792098-27792318(+)$1	220	29	44	31.8055
AAGGCGAAGGGCAAG	chr6:27101085-27101301(+)$1	216	140	155	26.3888
AAAGCUAAGGGCAAG	chr6:27860421-27860671(-)$1	250	119	134	24.4444

#otherMatches

#Struct PSSM
dddd4444ccc5555	chr6:26204941-26205205(+)$1	264	156	171	27.9166
gg[ccc!!bb!!ddd	chr6:27775881-27776120(+)$1	239	139	154	25.8333
DD{CCC:::cccooo	chr6:26205025-26205291(+)$1	266	72	87	27.9166
F:ccclllccc::::	chr6:26250269-26250527(-)$1	258	33	48	21.1111
KKDDDD::::ccc!!	chr6:26104270-26104518(+)$1	248	130	145	27.5000
YYDDDDZZZCCC}CC	chr6:26124737-26124950(+)$1	213	98	113	29.5833
]eeeee::ccclllc	chr6:26157152-26157367(+)$1	215	72	87	24.7222
88dddd22dddd]bb	chr1:228645004-228645246(-)$1	242	103	118	29.5833
qqqqqqqqdddd22e	chr11:118965898-118966114(-)$1	216	43	58	25.8333
ppccc333dddd]ee	chr6:27776257-27776474(+)$1	217	105	120	26.3888
ggg[a!!bb[ccc[b	chr6:27101102-27101336(+)$1	234	123	138	26.3888
ggg[a!!bb[ccc[b	chr6:27101136-27101368(+)$1	232	89	104	26.3888
KKDDDD::::ccc!!	chr6:26104348-26104600(+)$1	252	52	67	27.5000
%%%ccclllccc22g	chr6:26124687-26124937(+)$1	250	148	163	29.5833
YYCCC:::::EEEEE	chr6:27778098-27778306(+)$1	208	92	107	21.2500
YYCCCYYCCCEEEEE	chr6:27778110-27778356(+)$1	246	80	95	21.2500
ppcccbb]a22dddd	chr6:27778156-27778366(+)$1	210	34	49	21.2500
HHQQQQQQQQFFFFF	chr6:26285310-26285531(-)$1	221	29	44	27.9166
Cddddnnnnndddd:	chr6:26020995-26021279(+)$1	284	61	76	20.6944
::ffffff$$$$$cc	chr6:26198977-26199246(-)$1	269	150	165	29.5833
ppccc::::ccc[ee	chr6:26217459-26217694(+)$1	235	118	133	29.5833
EE{CCC:eeeee[bb	chr6:27114803-27115051(+)$1	248	137	152	25.8333
bpppppppbb]a555	chr6:27107261-27107520(+)$1	259	51	66	31.8055
gggg####ccc!!ee	chr6:27100755-27100971(+)$1	216	128	143	22.2222
YYDDDD}CCC:FFFF	chr6:26196976-26197224(-)$1	248	85	100	21.1111
KEEEEE::ccc"""c	chr6:27834471-27834760(-)$1	289	20	35	22.6388
ppccca22dddd]gg	chr6:27805558-27805834(-)$1	276	92	107	29.5833
55ccc333ccc333b	chr1:149813687-149813993(-)$1	306	103	118	25.8333
]eeeee::::::::c	chr6:26157167-26157441(+)$1	274	57	72	24.7222
ppccc333dddd]ee	chr6:27776274-27776518(+)$1	244	88	103	26.3888
dddd:::GGGGGGGd	chr6:27798852-27799106(-)$1	254	26	41	31.8055
oooobb88888888e	chr6:26188889-26189109(-)$1	220	30	45	27.9166
FFFFFF}EEEEE:::	chr11:118965970-118966233(-)$1	263	162	177	25.8333
F:ccclllccc:::d	chr6:27792098-27792318(+)$1	220	29	44	31.8055
ppccc333eeeeedd	chr6:27101085-27101301(+)$1	216	140	155	26.3888
5555bb22ccc22dd	chr6:27860421-27860671(-)$1	250	119	134	24.4444

#DB
))))....)))....	chr6:26204941-26205205(+)$1	1	156	171	27.9166
((.(((..((..(((	chr6:27775881-27776120(+)$1	1	139	154	25.8333
((.(((...(((...	chr6:26205025-26205291(+)$1	1	72	87	27.9166
(.(((...)))....	chr6:26250269-26250527(-)$1	1	33	48	21.1111
..((((....(((..	chr6:26104270-26104518(+)$1	1	130	145	27.5000
..))))...))).))	chr6:26124737-26124950(+)$1	1	98	113	29.5833
.)))))..(((...)	chr6:26157152-26157367(+)$1	1	72	87	24.7222
..))))..)))).))	chr1:228645004-228645246(-)$1	1	103	118	29.5833
........))))..)	chr11:118965898-118966114(-)$1	1	43	58	25.8333
..)))...)))).))	chr6:27776257-27776474(+)$1	1	105	120	26.3888
(((.(..((.(((.(	chr6:27101102-27101336(+)$1	1	123	138	26.3888
(((.(..((.(((.(	chr6:27101136-27101368(+)$1	1	89	104	26.3888
..((((....(((..	chr6:26104348-26104600(+)$1	1	52	67	27.5000
...(((...)))..)	chr6:26124687-26124937(+)$1	1	148	163	29.5833
..))).....(((((	chr6:27778098-27778306(+)$1	1	92	107	21.2500
..)))..)))(((((	chr6:27778110-27778356(+)$1	1	80	95	21.2500
..))))).)..))))	chr6:27778156-27778366(+)$1	1	34	49	21.2500
((........(((((	chr6:26285310-26285531(-)$1	1	29	44	27.9166
)((((.....)))).	chr6:26020995-26021279(+)$1	1	61	76	20.6944
..((((((.....((	chr6:26198977-26199246(-)$1	1	150	165	29.5833
..)))....(((.((	chr6:26217459-26217694(+)$1	1	118	133	29.5833
((.(((.(((((.((	chr6:27114803-27115051(+)$1	1	137	152	25.8333
(.......)).)...	chr6:27107261-27107520(+)$1	1	51	66	31.8055
((((....(((..((	chr6:27100755-27100971(+)$1	1	128	143	22.2222
..)))).))).((((	chr6:26196976-26197224(-)$1	1	85	100	21.1111
.(((((..(((...(	chr6:27834471-27834760(-)$1	1	20	35	22.6388
..))))..)))).))	chr6:27805558-27805834(-)$1	1	92	107	29.5833
..)))...)))...)	chr1:149813687-149813993(-)$1	1	103	118	25.8333
.)))))........(	chr6:26157167-26157441(+)$1	1	57	72	24.7222
..)))...)))).))	chr6:27776274-27776518(+)$1	1	88	103	26.3888
))))...((((((((	chr6:27798852-27799106(-)$1	1	26	41	31.8055
....))........)	chr6:26188889-26189109(-)$1	1	30	45	27.9166
)))))).)))))...	chr11:118965970-118966233(-)$1	1	162	177	25.8333
(.(((...)))...(	chr6:27792098-27792318(+)$1	1	29	44	31.8055
..)))...)))))))	chr6:27101085-27101301(+)$1	1	140	155	26.3888
....))..)))..))	chr6:27860421-27860671(-)$1	1	119	134	24.4444

#PSSM
C : 0.58	A : 0.41	
A : 0.77	G : 0.13	C : 0.08	
C : 0.61	G : 0.33	U : 0.02	A : 0.02	
G : 1.00	
C : 1.00	
C : 0.77	G : 0.13	U : 0.05	A : 0.02	
A : 1.00	
A : 1.00	
G : 0.88	A : 0.11	
C : 0.50	G : 0.50	
G : 0.77	C : 0.22	
C : 0.86	G : 0.08	A : 0.05	
A : 0.83	G : 0.16	
A : 0.83	U : 0.16	
G : 0.91	A : 0.05	C : 0.02	

#score	946.1111111111115
#seq	36
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_UTR_m1_run2.nuc.txt

#NT
GCUUUCUUUCCUU	chr14:21490675-21491021(-)$1	346	92	105	17.3333
uccuucucuucuu	chrX:122735093-122735448(-)$1	355	65	78	23.0624
ucucucccuucuu	chr19:4390240-4390600(-)$1	360	131	144	19.6250
UCUUCCUCUUCUU	chr19:45912464-45912723(-)$1	259	104	117	22.9583
gcucucucucccu	chr19:7710773-7711088(+)$1	315	146	159	17.0208
UCUUUCUCUUCUU	chr12:4412479-4412739(+)$1	260	105	118	27.1249
ccuuucucaucuc	chr19:41828744-41829112(+)$1	368	61	74	17.3333
UCUUUCUCUUCUU	chr12:4412539-4412826(+)$1	287	45	58	27.1249
UGUUUCUCCUCGU	chr1:248040201-248040480(+)$1	279	9	22	17.3333
CCUCUCUAUUCCU	chr2:85547702-85548014(-)$1	312	164	177	17.0208
UCUUUCUCUUUCU	chr1:46744258-46744542(-)$1	284	96	109	22.6458
GCUUCCUCUUCUU	chr9:116169955-116170306(-)$1	351	28	41	20.5625
UCUUUCUCUUCCC	chr10:102122186-102122473(+)$1	287	91	104	22.8541
UCUCUCCCUUCUU	chr7:143002961-143003256(+)$1	295	129	142	19.6250
ucccugucuucuu	chr5:177655075-177655387(-)$1	312	111	124	15.9791
UCAUUCUCUUCAU	chr2:85547937-85548199(-)$1	262	111	124	20.6666
GAUAUCUCUUCUU	chrX:62569263-62569569(-)$1	306	97	110	17.3333
ACUUUCUUUUCUC	chr2:54480859-54481223(-)$1	364	89	102	17.1250
ucuuucucuuccc	chr11:73685737-73686027(-)$1	290	46	59	22.8541
ucuuugucuuuuu	chr17:30808950-30809251(+)$1	301	102	115	19.4166
UCUUCGUCUUCUU	chr19:45912234-45912491(-)$1	257	100	113	19.0000
CCUUUCUUCUCUU	chr12:62730060-62730360(+)$1	300	137	150	17.3333
UCUUCGUCUUCUU	chr19:45912364-45912598(-)$1	234	207	220	19.0000
uauuucucuuccu	chr6:27223805-27224130(+)$1	325	128	141	22.8541
UGUUUCUUUUCCU	chr11:58386396-58386659(+)$1	263	19	32	19.4166
ucucucucuucuc	chr11:9192538-9192853(-)$1	315	132	145	20.4583
uauuucucuuccu	chr6:27223663-27223965(+)$1	302	270	283	22.8541
ucucucucugccu	chr19:48958124-48958415(+)$1	291	13	26	19.0000
GCUGUCUCUCCUU	chr20:35090668-35090947(+)$1	279	7	20	17.0208
ucuuucucuuucu	chr8:27316655-27316963(+)$1	308	75	88	22.6458
CUUUUCUCUCCUU	chr5:41918338-41918669(+)$1	331	101	114	17.6458
CCUUUCUGAUCUU	chr19:47219717-47220039(-)$1	322	176	189	16.8125
UCUUUCUCUUCCU	chr12:133236531-133236833(-)$1	302	130	143	26.3958
GGAUUCUCUUCUU	chr12:8249950-8250230(+)$1	280	91	104	17.2291
UCUUUCUCUUCCC	chr10:102122116-102122386(+)$1	270	161	174	22.8541
ucuuucucuuuuu	chr11:62566465-62566792(-)$1	327	130	143	23.3749
UCAUUCUCUUCAU	chr2:85547878-85548131(-)$1	253	43	56	20.6666
ACCuucucuuccu	chr11:66413542-66413869(+)$1	327	99	112	19.4166
CCUUUAUUUUCUU	chr6:28123437-28123710(+)$1	273	255	268	17.1249
UGUUUCUCCUCGU	chr1:248040121-248040398(+)$1	277	89	102	17.3333
ccucucucuuccu	chr3:52083575-52083866(-)$1	291	131	144	21.0833
UCUUUCUCUUUCU	chr19:50431923-50432229(-)$1	306	48	61	22.6458
GCUUUUUCUUCGU	chr22:22050719-22050980(+)$1	261	122	135	18.1666
ucuuucucuuucc	chr19:18280139-18280465(+)$1	326	108	121	19.1041
CUUUUCCCUUCCU	chr2:85548083-85548421(-)$1	338	166	179	16.3958
UCUUUCUCUCCCU	chr4:71655674-71655933(+)$1	259	76	89	22.5416
cuuuucucaucuu	chrX:64741870-64742139(-)$1	269	217	230	17.4374

#otherMatches

#Struct PSSM
:::::::::::::	chr19:54377803-54378081(+)$1	278	211	224	20.1458
>>>>>>>>=====	chr14:21490675-21491021(-)$1	346	92	105	17.3333
:::::::::::::	chrX:122735093-122735448(-)$1	355	65	78	23.0624
^^^^^ccc22bb3	chr19:4390240-4390600(-)$1	360	131	144	19.6250
ff>>>>>>>>>>>	chr19:45912464-45912723(-)$1	259	104	117	22.9583
bb>>>>>>>>>>>	chr19:7710773-7711088(+)$1	315	146	159	17.0208
dd:::::::::::	chr12:4412479-4412739(+)$1	260	105	118	27.1249
:::::::::::::	chr19:41828744-41829112(+)$1	368	61	74	17.3333
:::::::::::::	chr12:4412539-4412826(+)$1	287	45	58	27.1249
:::::::::::::	chr1:248040201-248040480(+)$1	279	9	22	17.3333
GMMMMFFFFFF::	chr2:85547702-85548014(-)$1	312	164	177	17.0208
:::::::::::::	chr1:46744258-46744542(-)$1	284	96	109	22.6458
DD:::::::::::	chr9:116169955-116170306(-)$1	351	28	41	20.5625
[a[cccqqqqqqq	chr10:102122186-102122473(+)$1	287	91	104	22.8541
:::::::::::::	chr7:143002961-143003256(+)$1	295	129	142	19.6250
rrrrbb]bb5555	chr5:177655075-177655387(-)$1	312	111	124	15.9791
:::::::::::::	chr2:85547937-85548199(-)$1	262	111	124	20.6666
eeeeqqqqqqqqe	chrX:62569263-62569569(-)$1	306	97	110	17.3333
FFFFFBBOOOOOO	chr2:54480859-54481223(-)$1	364	89	102	17.1250
:::::::::::::	chr11:73685737-73686027(-)$1	290	46	59	22.8541
c::::::::::::	chr17:30808950-30809251(+)$1	301	102	115	19.4166
^^^^^^^^^^^^^	chr19:45912234-45912491(-)$1	257	100	113	19.0000
88888888fffff	chr12:62730060-62730360(+)$1	300	137	150	17.3333
:::::::::::::	chr19:45912364-45912598(-)$1	234	207	220	19.0000
:::::::::::::	chr6:27223805-27224130(+)$1	325	128	141	22.8541
JJJJJJJJJTTTT	chr11:58386396-58386659(+)$1	263	19	32	19.4166
KBB{BB:::::::	chr11:9192538-9192853(-)$1	315	132	145	20.4583
xxxxxxxxxxxxx	chr6:27223663-27223965(+)$1	302	270	283	22.8541
:::::::::::::	chr19:48958124-48958415(+)$1	291	13	26	19.0000
DDDD:::::::::	chr20:35090668-35090947(+)$1	279	7	20	17.0208
ggggggg]hhhhh	chr8:27316655-27316963(+)$1	308	75	88	22.6458
22ccc22bb7777	chr5:41918338-41918669(+)$1	331	101	114	17.6458
:::::::DDDD~~	chr19:47219717-47220039(-)$1	322	176	189	16.8125
:::::::::::::	chr12:133236531-133236833(-)$1	302	130	143	26.3958
===========::	chr12:8249950-8250230(+)$1	280	91	104	17.2291
[a[cccqqqqqqq	chr10:102122116-102122386(+)$1	270	161	174	22.8541
yyyyyyyyyyyyy	chr11:62566465-62566792(-)$1	327	130	143	23.3749
!bb####bb"""c	chr2:85547878-85548131(-)$1	253	43	56	20.6666
cnnnnnccc::::	chr11:66413542-66413869(+)$1	327	99	112	19.4166
YYCCC}EEEEE::	chr6:28123437-28123710(+)$1	273	255	268	17.1249
ff22bb:::ccco	chr1:248040121-248040398(+)$1	277	89	102	17.3333
::::::::::::E	chr3:52083575-52083866(-)$1	291	131	144	21.0833
++++++++++eee	chr19:50431923-50432229(-)$1	306	48	61	22.6458
b]hhhhhhhh:::	chr22:22050719-22050980(+)$1	261	122	135	18.1666
^^^^^^^^^^^^^	chr19:18280139-18280465(+)$1	326	108	121	19.1041
>>>>>>>>>>>>>	chr2:85548083-85548421(-)$1	338	166	179	16.3958
iiiii::::::::	chr4:71655674-71655933(+)$1	259	76	89	22.5416
:::::::::::::	chrX:64741870-64742139(-)$1	269	217	230	17.4374

#DB
.............	chr19:54377803-54378081(+)$1	1	211	224	20.1458
........)))))	chr14:21490675-21491021(-)$1	1	92	105	17.3333
.............	chrX:122735093-122735448(-)$1	1	65	78	23.0624
.....)))..)).	chr19:4390240-4390600(-)$1	1	131	144	19.6250
))...........	chr19:45912464-45912723(-)$1	1	104	117	22.9583
))...........	chr19:7710773-7711088(+)$1	1	146	159	17.0208
))...........	chr12:4412479-4412739(+)$1	1	105	118	27.1249
.............	chr19:41828744-41829112(+)$1	1	61	74	17.3333
.............	chr12:4412539-4412826(+)$1	1	45	58	27.1249
.............	chr1:248040201-248040480(+)$1	1	9	22	17.3333
(....((((((..	chr2:85547702-85548014(-)$1	1	164	177	17.0208
.............	chr1:46744258-46744542(-)$1	1	96	109	22.6458
((...........	chr9:116169955-116170306(-)$1	1	28	41	20.5625
.(.(((.......	chr10:102122186-102122473(+)$1	1	91	104	22.8541
.............	chr7:143002961-143003256(+)$1	1	129	142	19.6250
....)).))....	chr5:177655075-177655387(-)$1	1	111	124	15.9791
.............	chr2:85547937-85548199(-)$1	1	111	124	20.6666
((((........)	chrX:62569263-62569569(-)$1	1	97	110	17.3333
(((((((......	chr2:54480859-54481223(-)$1	1	89	102	17.1250
.............	chr11:73685737-73686027(-)$1	1	46	59	22.8541
)............	chr17:30808950-30809251(+)$1	1	102	115	19.4166
.............	chr19:45912234-45912491(-)$1	1	100	113	19.0000
........)))))	chr12:62730060-62730360(+)$1	1	137	150	17.3333
.............	chr19:45912364-45912598(-)$1	1	207	220	19.0000
.............	chr6:27223805-27224130(+)$1	1	128	141	22.8541
(((((((((....	chr11:58386396-58386659(+)$1	1	19	32	19.4166
.((.((.......	chr11:9192538-9192853(-)$1	1	132	145	20.4583
.............	chr6:27223663-27223965(+)$1	1	270	283	22.8541
.............	chr19:48958124-48958415(+)$1	1	13	26	19.0000
((((.........	chr20:35090668-35090947(+)$1	1	7	20	17.0208
))))))).)))))	chr8:27316655-27316963(+)$1	1	75	88	22.6458
..)))..))....	chr5:41918338-41918669(+)$1	1	101	114	17.6458
.......))))..	chr19:47219717-47220039(-)$1	1	176	189	16.8125
.............	chr12:133236531-133236833(-)$1	1	130	143	26.3958
)))))))))))..	chr12:8249950-8250230(+)$1	1	91	104	17.2291
.(.(((.......	chr10:102122116-102122386(+)$1	1	161	174	22.8541
.............	chr11:62566465-62566792(-)$1	1	130	143	23.3749
.((....((...(	chr2:85547878-85548131(-)$1	1	43	56	20.6666
(.....)))....	chr11:66413542-66413869(+)$1	1	99	112	19.4166
..))).)))))..	chr6:28123437-28123710(+)$1	1	255	268	17.1249
))..))...(((.	chr1:248040121-248040398(+)$1	1	89	102	17.3333
............(	chr3:52083575-52083866(-)$1	1	131	144	21.0833
..........(((	chr19:50431923-50432229(-)$1	1	48	61	22.6458
).))))))))...	chr22:22050719-22050980(+)$1	1	122	135	18.1666
.............	chr19:18280139-18280465(+)$1	1	108	121	19.1041
.............	chr2:85548083-85548421(-)$1	1	166	179	16.3958
)))))........	chr4:71655674-71655933(+)$1	1	76	89	22.5416
.............	chrX:64741870-64742139(-)$1	1	217	230	17.4374

#PSSM
U : 0.35	u : 0.27	G : 0.12	C : 0.12	c : 0.06	A : 0.04	g : 0.02	
C : 0.49	c : 0.27	G : 0.08	u : 0.04	a : 0.04	U : 0.04	A : 0.02	
U : 0.56	u : 0.31	A : 0.06	c : 0.04	C : 0.02	
U : 0.54	u : 0.25	c : 0.12	C : 0.04	A : 0.02	G : 0.02	
U : 0.54	u : 0.37	C : 0.08	
C : 0.54	c : 0.33	g : 0.04	G : 0.04	A : 0.02	U : 0.02	
U : 0.58	u : 0.35	C : 0.04	c : 0.02	
C : 0.47	c : 0.35	U : 0.10	u : 0.02	A : 0.02	G : 0.02	
U : 0.54	u : 0.33	C : 0.06	a : 0.04	A : 0.02	
U : 0.54	u : 0.33	C : 0.08	c : 0.02	g : 0.02	
C : 0.58	c : 0.29	u : 0.08	U : 0.04	
U : 0.33	u : 0.18	c : 0.18	C : 0.18	G : 0.06	A : 0.04	
U : 0.56	u : 0.29	c : 0.08	C : 0.06	

#score	960.9583333333334
#seq	48
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_UTR_m2_run2.nuc.txt

#NT
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152664-2152870(-)$1	206	57	98	114.7213
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152881-2153085(-)$1	204	67	108	113.0000
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152648-2152857(-)$1	209	44	85	114.7213
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152688-2152891(-)$1	203	78	119	114.7213
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152948-2153152(-)$1	204	134	175	113.0000
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152894-2153101(-)$1	207	83	124	113.0000
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152863-2153066(-)$1	203	48	89	113.0000
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152639-2152842(-)$1	203	29	70	114.7213
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153099-2153304(-)$1	205	155	196	103.4918
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152876-2153081(-)$1	205	63	104	113.0000
acacacagcacacacacaaacacagcacacacaugcacaca	chr11:2152783-2152989(-)$1	206	50	91	96.0327
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152766-2152971(-)$1	205	158	199	114.7213
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152646-2152848(-)$1	202	35	76	114.7213
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152713-2152916(-)$1	203	103	144	114.7213
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152682-2152888(-)$1	206	75	116	114.7213
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152752-2152954(-)$1	202	141	182	114.7213
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152952-2153163(-)$1	211	145	186	113.0000
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153050-2153254(-)$1	204	105	146	103.4918
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152977-2153188(-)$1	211	170	211	113.0000
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152676-2152880(-)$1	204	67	108	114.7213
acacacagcacacacacaaacacagcacacacaugcacaca	chr11:2152774-2152976(-)$1	202	37	78	96.0327
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152750-2152952(-)$1	202	139	180	114.7213
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152716-2152918(-)$1	202	105	146	114.7213
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152680-2152882(-)$1	202	69	110	114.7213
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152698-2152905(-)$1	207	92	133	114.7213
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153079-2153285(-)$1	206	136	177	103.4918
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152972-2153174(-)$1	202	156	197	113.0000
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152621-2152827(-)$1	206	14	55	114.7213
acacacagcacacacacaaacacagcacacacaugcacaca	chr11:2152806-2153008(-)$1	202	69	110	96.0327
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152634-2152839(-)$1	205	26	67	114.7213
acacacagcacacacacaaacacagcacacacaugcacaca	chr11:2152808-2153015(-)$1	207	76	117	96.0327
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152693-2152898(-)$1	205	85	126	114.7213
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153090-2153298(-)$1	208	149	190	103.4918
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153060-2153263(-)$1	203	114	155	103.4918
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153010-2153226(-)$1	216	77	118	103.4918
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152866-2153076(-)$1	210	58	99	113.0000
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152708-2152913(-)$1	205	100	141	114.7213
acacacagcacacacacaaacacagcacacacaugcacaca	chr11:2152800-2153003(-)$1	203	64	105	96.0327
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153088-2153290(-)$1	202	141	182	103.4918
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152672-2152876(-)$1	204	63	104	114.7213
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152754-2152959(-)$1	205	146	187	114.7213
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152861-2153063(-)$1	202	45	86	113.0000
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152828-2153038(-)$1	210	20	61	113.0000
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153071-2153279(-)$1	208	130	171	103.4918
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152923-2153125(-)$1	202	107	148	113.0000
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153033-2153243(-)$1	210	94	135	103.4918
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153043-2153250(-)$1	207	101	142	103.4918
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152927-2153134(-)$1	207	116	157	113.0000
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152846-2153049(-)$1	203	31	72	113.0000
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152771-2152974(-)$1	203	161	202	114.7213
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153026-2153231(-)$1	205	82	123	103.4918
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152841-2153043(-)$1	202	25	66	113.0000
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152825-2153027(-)$1	202	9	50	113.0000
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153085-2153288(-)$1	203	139	180	103.4918
acacagcacacacacaaacgcacagcacacacacgcacaca	chr11:2153193-2153397(-)$1	204	156	197	108.2459
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152760-2152966(-)$1	206	153	194	114.7213
acacagcacacacacaaacacacagcacacacaugcacaca	chr11:2152691-2152893(-)$1	202	80	121	114.7213
acacacagcacacacacaaacacagcacacacaugcacaca	chr11:2152789-2152993(-)$1	204	54	95	96.0327
acacagcacacacacaaagacacagcacacacaugcacaca	chr11:2152885-2153094(-)$1	209	76	117	113.0000
acacagcacacacacaaacgcacagcacacacaaacgcaca	chr11:2153107-2153317(-)$1	210	168	209	103.4918

#otherMatches

#Struct PSSM
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152747-2152950(-)$1	203	137	178	114.7213
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152664-2152870(-)$1	206	57	98	114.7213
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152881-2153085(-)$1	204	67	108	113.0000
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152648-2152857(-)$1	209	44	85	114.7213
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152688-2152891(-)$1	203	78	119	114.7213
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152948-2153152(-)$1	204	134	175	113.0000
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152894-2153101(-)$1	207	83	124	113.0000
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152863-2153066(-)$1	203	48	89	113.0000
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152639-2152842(-)$1	203	29	70	114.7213
pppppccc:::::::::::bblllbb::::::::::BBZZZ	chr11:2153099-2153304(-)$1	205	155	196	103.4918
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152876-2153081(-)$1	205	63	104	113.0000
pppppppbb:::::::::::::::cccooooooccc:::::	chr11:2152783-2152989(-)$1	206	50	91	96.0327
_____BB:::::::::::::::::cccooooooccc:::::	chr11:2152766-2152971(-)$1	205	158	199	114.7213
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152646-2152848(-)$1	202	35	76	114.7213
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152713-2152916(-)$1	203	103	144	114.7213
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152682-2152888(-)$1	206	75	116	114.7213
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152752-2152954(-)$1	202	141	182	114.7213
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152952-2153163(-)$1	211	145	186	113.0000
pppppccc:::::::::::bb"""bbssssssssssbb333	chr11:2153050-2153254(-)$1	204	105	146	103.4918
nnnnnbb:::::::::::::::::BB|||||||CCC:::::	chr11:2152977-2153188(-)$1	211	170	211	113.0000
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152676-2152880(-)$1	204	67	108	114.7213
pppppppbb:::::::::::::::cccooooooccc:::::	chr11:2152774-2152976(-)$1	202	37	78	96.0327
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152750-2152952(-)$1	202	139	180	114.7213
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152716-2152918(-)$1	202	105	146	114.7213
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152680-2152882(-)$1	202	69	110	114.7213
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152698-2152905(-)$1	207	92	133	114.7213
pppppccc::::::::::::::::bbssssssssssbb:::	chr11:2153079-2153285(-)$1	206	136	177	103.4918
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152972-2153174(-)$1	202	156	197	113.0000
:::::BB:::::::::::::::::cccooooooccc:::::	chr11:2152621-2152827(-)$1	206	14	55	114.7213
pppppppbb:::::::::::::::cccooooooccc:::::	chr11:2152806-2153008(-)$1	202	69	110	96.0327
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152634-2152839(-)$1	205	26	67	114.7213
pppppppbb:::::::::::::::cccooooooccc:::::	chr11:2152808-2153015(-)$1	207	76	117	96.0327
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152693-2152898(-)$1	205	85	126	114.7213
pppppccc:::::::::::bb"""bbssssssssssbb333	chr11:2153090-2153298(-)$1	208	149	190	103.4918
pppppccc:::::::::::bb"""bbssssssssssbb333	chr11:2153060-2153263(-)$1	203	114	155	103.4918
pppppccc::::::::::::::::bbssssssssssbb:::	chr11:2153010-2153226(-)$1	216	77	118	103.4918
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152866-2153076(-)$1	210	58	99	113.0000
_____BB:::::::::::::::::cccooooooccc:::::	chr11:2152708-2152913(-)$1	205	100	141	114.7213
pppppppbb:::::::::::::::cccooooooccc:::::	chr11:2152800-2153003(-)$1	203	64	105	96.0327
pppppccc::::::::::::::::bbssssssssssbb:::	chr11:2153088-2153290(-)$1	202	141	182	103.4918
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152672-2152876(-)$1	204	63	104	114.7213
vvvvvbb:::::::::::::::::cccooooooccc:::::	chr11:2152754-2152959(-)$1	205	146	187	114.7213
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152861-2153063(-)$1	202	45	86	113.0000
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152828-2153038(-)$1	210	20	61	113.0000
pppppccc:::::::::::bb"""bbssssssssssbb333	chr11:2153071-2153279(-)$1	208	130	171	103.4918
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152923-2153125(-)$1	202	107	148	113.0000
pppppccc:::::::::::bb"""bbssssssssssbb333	chr11:2153033-2153243(-)$1	210	94	135	103.4918
pppppccc:::::::::::bb"""bbssssssssssbb333	chr11:2153043-2153250(-)$1	207	101	142	103.4918
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152927-2153134(-)$1	207	116	157	113.0000
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152846-2153049(-)$1	203	31	72	113.0000
_____BB:::::::::::::::::cccooooooccc:::::	chr11:2152771-2152974(-)$1	203	161	202	114.7213
pppppccc:::::::::::bb"""bbssssssssssbb333	chr11:2153026-2153231(-)$1	205	82	123	103.4918
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152841-2153043(-)$1	202	25	66	113.0000
nnnnnbb::::::::::::::::::::::::EEEEE:::::	chr11:2152825-2153027(-)$1	202	9	50	113.0000
pppppccc::::::::::::::::bbssssssssssbb:::	chr11:2153085-2153288(-)$1	203	139	180	103.4918
:::::bbuuuuuuuuuuuubb:::bbqqqqqqqqbb:::::	chr11:2153193-2153397(-)$1	204	156	197	108.2459
_____BB:::::::::::::::::cccooooooccc:::::	chr11:2152760-2152966(-)$1	206	153	194	114.7213
_____BB:::::::::::::::::cccooooooccc:::::	chr11:2152691-2152893(-)$1	202	80	121	114.7213
pppppppbb:::::::::::::::cccooooooccc:::::	chr11:2152789-2152993(-)$1	204	54	95	96.0327
nnnnnbb:::::::::::::::::cccooooooccc:::::	chr11:2152885-2153094(-)$1	209	76	117	113.0000
pppppccc:::::::::::bblllbb::::::::::BB:::	chr11:2153107-2153317(-)$1	210	168	209	103.4918

#DB
.....)).................(((......))).....	chr11:2152747-2152950(-)$1	1	137	178	114.7213
.....)).................(((......))).....	chr11:2152664-2152870(-)$1	1	57	98	114.7213
.....)).................(((......))).....	chr11:2152881-2153085(-)$1	1	67	108	113.0000
.....)).................(((......))).....	chr11:2152648-2152857(-)$1	1	44	85	114.7213
.....)).................(((......))).....	chr11:2152688-2152891(-)$1	1	78	119	114.7213
.....)).................(((......))).....	chr11:2152948-2153152(-)$1	1	134	175	113.0000
.....)).................(((......))).....	chr11:2152894-2153101(-)$1	1	83	124	113.0000
.....)).................(((......))).....	chr11:2152863-2153066(-)$1	1	48	89	113.0000
.....)).................(((......))).....	chr11:2152639-2152842(-)$1	1	29	70	114.7213
.....)))...........((...))..........))...	chr11:2153099-2153304(-)$1	1	155	196	103.4918
.....)).................(((......))).....	chr11:2152876-2153081(-)$1	1	63	104	113.0000
.......))...............(((......))).....	chr11:2152783-2152989(-)$1	1	50	91	96.0327
.....)).................(((......))).....	chr11:2152766-2152971(-)$1	1	158	199	114.7213
.....)).................(((......))).....	chr11:2152646-2152848(-)$1	1	35	76	114.7213
.....)).................(((......))).....	chr11:2152713-2152916(-)$1	1	103	144	114.7213
.....)).................(((......))).....	chr11:2152682-2152888(-)$1	1	75	116	114.7213
.....)).................(((......))).....	chr11:2152752-2152954(-)$1	1	141	182	114.7213
.....)).................(((......))).....	chr11:2152952-2153163(-)$1	1	145	186	113.0000
.....)))...........((...((..........))...	chr11:2153050-2153254(-)$1	1	105	146	103.4918
.....)).................)).......))).....	chr11:2152977-2153188(-)$1	1	170	211	113.0000
.....)).................(((......))).....	chr11:2152676-2152880(-)$1	1	67	108	114.7213
.......))...............(((......))).....	chr11:2152774-2152976(-)$1	1	37	78	96.0327
.....)).................(((......))).....	chr11:2152750-2152952(-)$1	1	139	180	114.7213
.....)).................(((......))).....	chr11:2152716-2152918(-)$1	1	105	146	114.7213
.....)).................(((......))).....	chr11:2152680-2152882(-)$1	1	69	110	114.7213
.....)).................(((......))).....	chr11:2152698-2152905(-)$1	1	92	133	114.7213
.....)))................((..........))...	chr11:2153079-2153285(-)$1	1	136	177	103.4918
.....)).................(((......))).....	chr11:2152972-2153174(-)$1	1	156	197	113.0000
.....((.................(((......))).....	chr11:2152621-2152827(-)$1	1	14	55	114.7213
.......))...............(((......))).....	chr11:2152806-2153008(-)$1	1	69	110	96.0327
.....)).................(((......))).....	chr11:2152634-2152839(-)$1	1	26	67	114.7213
.......))...............(((......))).....	chr11:2152808-2153015(-)$1	1	76	117	96.0327
.....)).................(((......))).....	chr11:2152693-2152898(-)$1	1	85	126	114.7213
.....)))...........((...((..........))...	chr11:2153090-2153298(-)$1	1	149	190	103.4918
.....)))...........((...((..........))...	chr11:2153060-2153263(-)$1	1	114	155	103.4918
.....)))................((..........))...	chr11:2153010-2153226(-)$1	1	77	118	103.4918
.....)).................(((......))).....	chr11:2152866-2153076(-)$1	1	58	99	113.0000
.....)).................(((......))).....	chr11:2152708-2152913(-)$1	1	100	141	114.7213
.......))...............(((......))).....	chr11:2152800-2153003(-)$1	1	64	105	96.0327
.....)))................((..........))...	chr11:2153088-2153290(-)$1	1	141	182	103.4918
.....)).................(((......))).....	chr11:2152672-2152876(-)$1	1	63	104	114.7213
.....)).................(((......))).....	chr11:2152754-2152959(-)$1	1	146	187	114.7213
.....)).................(((......))).....	chr11:2152861-2153063(-)$1	1	45	86	113.0000
.....)).................(((......))).....	chr11:2152828-2153038(-)$1	1	20	61	113.0000
.....)))...........((...((..........))...	chr11:2153071-2153279(-)$1	1	130	171	103.4918
.....)).................(((......))).....	chr11:2152923-2153125(-)$1	1	107	148	113.0000
.....)))...........((...((..........))...	chr11:2153033-2153243(-)$1	1	94	135	103.4918
.....)))...........((...((..........))...	chr11:2153043-2153250(-)$1	1	101	142	103.4918
.....)).................(((......))).....	chr11:2152927-2153134(-)$1	1	116	157	113.0000
.....)).................(((......))).....	chr11:2152846-2153049(-)$1	1	31	72	113.0000
.....)).................(((......))).....	chr11:2152771-2152974(-)$1	1	161	202	114.7213
.....)))...........((...((..........))...	chr11:2153026-2153231(-)$1	1	82	123	103.4918
.....)).................(((......))).....	chr11:2152841-2153043(-)$1	1	25	66	113.0000
.....))........................(((((.....	chr11:2152825-2153027(-)$1	1	9	50	113.0000
.....)))................((..........))...	chr11:2153085-2153288(-)$1	1	139	180	103.4918
.....((............))...((........)).....	chr11:2153193-2153397(-)$1	1	156	197	108.2459
.....)).................(((......))).....	chr11:2152760-2152966(-)$1	1	153	194	114.7213
.....)).................(((......))).....	chr11:2152691-2152893(-)$1	1	80	121	114.7213
.......))...............(((......))).....	chr11:2152789-2152993(-)$1	1	54	95	96.0327
.....)).................(((......))).....	chr11:2152885-2153094(-)$1	1	76	117	113.0000
.....)))...........((...))..........))...	chr11:2153107-2153317(-)$1	1	168	209	103.4918

#PSSM
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 0.90	c : 0.09	
c : 0.90	a : 0.09	
a : 0.90	g : 0.09	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 0.90	c : 0.09	
a : 1.00	
c : 0.62	g : 0.27	a : 0.09	
a : 0.77	g : 0.22	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 0.77	a : 0.21	c : 0.01	
g : 0.78	a : 0.21	
c : 1.00	
a : 0.78	g : 0.21	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	

#score	6704.147540983604
#seq	61
#width	41
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_CDS_m2_run2.nuc.txt

#NT
UGUG	chr1:214816305-214816544(+)$1	239	41	45	12.0000
UGUG	chr3:169700848-169701142(+)$1	294	3	7	12.0000
UGUG	chrM:14203-14424(-)$1	221	60	64	12.0000
UGUG	chr7:26233143-26233355(-)$1	212	186	190	12.0000
UGUG	chr11:3023120-3023367(-)$1	247	62	66	12.0000
UGUG	chrM:9802-10037(+)$1	235	142	146	12.0000
UGUG	chr2:187368820-187369039(+)$1	219	48	52	12.0000
UGUG	chr17:34171000-34171235(+)$1	235	209	213	12.0000
UGUG	chr7:91708343-91708627(+)$1	284	121	125	12.0000
UGUG	chrM:10479-10691(+)$1	212	164	168	12.0000
UGUG	chr21:34921813-34922083(+)$1	270	215	219	12.0000
UGUG	chr6:35837484-35837745(-)$1	261	231	235	12.0000
UGUG	chrM:14252-14487(-)$1	235	123	127	12.0000
UGUG	chr7:158485905-158486185(-)$1	280	97	101	12.0000
UGUG	chr11:62284844-62285115(-)$1	271	107	111	12.0000
UGUG	chrM:13266-13496(+)$1	230	92	96	12.0000
UGUG	chr11:62293662-62293889(-)$1	227	172	176	12.0000
UGUG	chr3:180665551-180665818(+)$1	267	131	135	12.0000
UGUG	chr8:101725257-101725496(-)$1	239	100	104	12.0000
UGUG	chr11:62293185-62293427(-)$1	242	94	98	12.0000
UGUG	chrM:9885-10090(+)$1	205	59	63	12.0000
UGUG	chr11:62298293-62298533(-)$1	240	85	89	12.0000
UGUG	chr14:61278600-61278930(+)$1	330	5	9	12.0000
UGUG	chr21:38528976-38529280(+)$1	304	235	239	12.0000
UGUG	chr11:62288506-62288797(-)$1	291	114	118	12.0000
UGUG	chrM:12513-12766(+)$1	253	137	141	12.0000
UGUG	chr12:6692404-6692644(-)$1	240	30	34	12.0000
UGUG	chr13:98667721-98667996(+)$1	275	248	252	12.0000
UGUG	chrM:9842-10050(+)$1	208	102	106	12.0000
UGUG	chr6:87970248-87970555(+)$1	307	65	69	12.0000
UGUG	chrM:9790-10002(+)$1	212	154	158	12.0000
UGUG	chr17:65900716-65900974(+)$1	258	42	46	12.0000
UGUG	chr7:91623834-91624063(+)$1	229	13	17	12.0000
UGUG	chr7:91631594-91631847(+)$1	253	84	88	12.0000
UGUG	chr1:220195597-220195855(-)$1	258	16	20	12.0000
UGUG	chr11:11964381-11964703(+)$1	322	38	42	12.0000
ugug	chr7:91643462-91643696(+)$1	234	212	216	12.0000
UGUG	chrM:14416-14644(-)$1	228	17	21	12.0000
UGUG	chr17:29195250-29195531(+)$1	281	66	70	12.0000
UGUG	chrM:13255-13466(+)$1	211	103	107	12.0000
UGUG	chr7:26233155-26233376(-)$1	221	207	211	12.0000
UGUG	chrM:14367-14602(-)$1	235	35	39	12.0000
UGUG	chr5:33467644-33467905(+)$1	261	4	8	12.0000
UGUG	chr11:62298842-62299120(-)$1	278	81	85	12.0000
UGUG	chr16:8997030-8997358(-)$1	328	31	35	12.0000
UGUG	chr2:190339931-190340257(+)$1	326	242	246	12.0000
UGUG	chr11:62284793-62285044(-)$1	251	36	40	12.0000
UGUG	chrM:14224-14452(-)$1	228	88	92	12.0000
UGUG	chr21:34931479-34931768(+)$1	289	202	206	12.0000
UGUG	chr17:62498186-62498441(-)$1	255	22	26	12.0000
UGUG	chrM:12622-12843(+)$1	221	28	32	12.0000
UGUG	chr7:91667875-91668120(+)$1	245	39	43	12.0000
UGUG	chr10:105762224-105762495(+)$1	271	34	38	12.0000
UGUG	chr10:70098796-70099029(+)$1	233	66	70	12.0000
UGUG	chrM:9856-10085(+)$1	229	88	92	12.0000
UGUG	chr2:238672616-238672920(+)$1	304	207	211	12.0000
UGUG	chr4:13605609-13605939(-)$1	330	41	45	12.0000
UGUG	chr14:56107746-56108026(+)$1	280	30	34	12.0000
UGUG	chrM:14452-14671(-)$1	219	23	27	12.0000
UGUG	chr3:37368338-37368589(+)$1	251	180	184	12.0000
UGUG	chr12:6690356-6690607(-)$1	251	190	194	12.0000
UGUG	chrM:9850-10056(+)$1	206	94	98	12.0000
UGUG	chr2:55253846-55254193(-)$1	347	35	39	12.0000
UGUG	chrM:12643-12853(+)$1	210	7	11	12.0000
UGUG	chr1:220152740-220153016(-)$1	276	248	252	12.0000
UGUG	chr11:62294319-62294593(-)$1	274	114	118	12.0000

#otherMatches

#Struct PSSM
eeee	chr12:21789969-21790229(-)$1	260	155	159	12.0000
ddd!	chr1:214816305-214816544(+)$1	239	41	45	12.0000
:eee	chr3:169700848-169701142(+)$1	294	3	7	12.0000
d[bb	chrM:14203-14424(-)$1	221	60	64	12.0000
}DDD	chr7:26233143-26233355(-)$1	212	186	190	12.0000
ffff	chr11:3023120-3023367(-)$1	247	62	66	12.0000
FCCC	chrM:9802-10037(+)$1	235	142	146	12.0000
KEEE	chr2:187368820-187369039(+)$1	219	48	52	12.0000
:CCC	chr17:34171000-34171235(+)$1	235	209	213	12.0000
::::	chr7:91708343-91708627(+)$1	284	121	125	12.0000
bb]b	chrM:10479-10691(+)$1	212	164	168	12.0000
!ddd	chr21:34921813-34922083(+)$1	270	215	219	12.0000
b]a]	chr6:35837484-35837745(-)$1	261	231	235	12.0000
d[bb	chrM:14252-14487(-)$1	235	123	127	12.0000
:hhh	chr7:158485905-158486185(-)$1	280	97	101	12.0000
Gddd	chr11:62284844-62285115(-)$1	271	107	111	12.0000
dd]c	chrM:13266-13496(+)$1	230	92	96	12.0000
:BB}	chr11:62293662-62293889(-)$1	227	172	176	12.0000
emmm	chr3:180665551-180665818(+)$1	267	131	135	12.0000
::::	chr8:101725257-101725496(-)$1	239	100	104	12.0000
====	chr11:62293185-62293427(-)$1	242	94	98	12.0000
gg[b	chrM:9885-10090(+)$1	205	59	63	12.0000
CCHH	chr11:62298293-62298533(-)$1	240	85	89	12.0000
E{BB	chr14:61278600-61278930(+)$1	330	5	9	12.0000
eee]	chr21:38528976-38529280(+)$1	304	235	239	12.0000
CCC{	chr11:62288506-62288797(-)$1	291	114	118	12.0000
gggg	chrM:12513-12766(+)$1	253	137	141	12.0000
c]bb	chr12:6692404-6692644(-)$1	240	30	34	12.0000
}FFF	chr13:98667721-98667996(+)$1	275	248	252	12.0000
FCCC	chrM:9842-10050(+)$1	208	102	106	12.0000
dddd	chr6:87970248-87970555(+)$1	307	65	69	12.0000
FFF:	chrM:9790-10002(+)$1	212	154	158	12.0000
mmff	chr17:65900716-65900974(+)$1	258	42	46	12.0000
A{GG	chr7:91623834-91624063(+)$1	229	13	17	12.0000
2ccc	chr7:91631594-91631847(+)$1	253	84	88	12.0000
DDDK	chr1:220195597-220195855(-)$1	258	16	20	12.0000
dd[c	chr11:11964381-11964703(+)$1	322	38	42	12.0000
iiii	chr7:91643462-91643696(+)$1	234	212	216	12.0000
hh[d	chrM:14416-14644(-)$1	228	17	21	12.0000
eeee	chr17:29195250-29195531(+)$1	281	66	70	12.0000
ffff	chrM:13255-13466(+)$1	211	103	107	12.0000
}DDD	chr7:26233155-26233376(-)$1	221	207	211	12.0000
FFFF	chrM:14367-14602(-)$1	235	35	39	12.0000
ffff	chr5:33467644-33467905(+)$1	261	4	8	12.0000
""cc	chr11:62298842-62299120(-)$1	278	81	85	12.0000
CCNN	chr16:8997030-8997358(-)$1	328	31	35	12.0000
Eiii	chr2:190339931-190340257(+)$1	326	242	246	12.0000
Gddd	chr11:62284793-62285044(-)$1	251	36	40	12.0000
d[bb	chrM:14224-14452(-)$1	228	88	92	12.0000
#ggg	chr21:34931479-34931768(+)$1	289	202	206	12.0000
g!!c	chr17:62498186-62498441(-)$1	255	22	26	12.0000
gggg	chrM:12622-12843(+)$1	221	28	32	12.0000
$$$$	chr7:91667875-91668120(+)$1	245	39	43	12.0000
eeee	chr10:105762224-105762495(+)$1	271	34	38	12.0000
fff[	chr10:70098796-70099029(+)$1	233	66	70	12.0000
[eee	chrM:9856-10085(+)$1	229	88	92	12.0000
ccc5	chr2:238672616-238672920(+)$1	304	207	211	12.0000
ffff	chr4:13605609-13605939(-)$1	330	41	45	12.0000
gggg	chr14:56107746-56108026(+)$1	280	30	34	12.0000
gggg	chrM:14452-14671(-)$1	219	23	27	12.0000
ddd#	chr3:37368338-37368589(+)$1	251	180	184	12.0000
tddd	chr12:6690356-6690607(-)$1	251	190	194	12.0000
FCCC	chrM:9850-10056(+)$1	206	94	98	12.0000
qqqf	chr2:55253846-55254193(-)$1	347	35	39	12.0000
EEEE	chrM:12643-12853(+)$1	210	7	11	12.0000
:BBY	chr1:220152740-220153016(-)$1	276	248	252	12.0000
33bb	chr11:62294319-62294593(-)$1	274	114	118	12.0000

#DB
((((	chr12:21789969-21790229(-)$1	1	155	159	12.0000
(((.	chr1:214816305-214816544(+)$1	1	41	45	12.0000
.(((	chr3:169700848-169701142(+)$1	1	3	7	12.0000
(.((	chrM:14203-14424(-)$1	1	60	64	12.0000
.)))	chr7:26233143-26233355(-)$1	1	186	190	12.0000
))))	chr11:3023120-3023367(-)$1	1	62	66	12.0000
))))	chrM:9802-10037(+)$1	1	142	146	12.0000
.(((	chr2:187368820-187369039(+)$1	1	48	52	12.0000
.)))	chr17:34171000-34171235(+)$1	1	209	213	12.0000
....	chr7:91708343-91708627(+)$1	1	121	125	12.0000
)).)	chrM:10479-10691(+)$1	1	164	168	12.0000
.(((	chr21:34921813-34922083(+)$1	1	215	219	12.0000
).).	chr6:35837484-35837745(-)$1	1	231	235	12.0000
(.((	chrM:14252-14487(-)$1	1	123	127	12.0000
.(((	chr7:158485905-158486185(-)$1	1	97	101	12.0000
((((	chr11:62284844-62285115(-)$1	1	107	111	12.0000
)).)	chrM:13266-13496(+)$1	1	92	96	12.0000
.)).	chr11:62293662-62293889(-)$1	1	172	176	12.0000
(...	chr3:180665551-180665818(+)$1	1	131	135	12.0000
....	chr8:101725257-101725496(-)$1	1	100	104	12.0000
))))	chr11:62293185-62293427(-)$1	1	94	98	12.0000
((.(	chrM:9885-10090(+)$1	1	59	63	12.0000
))))	chr11:62298293-62298533(-)$1	1	85	89	12.0000
(.((	chr14:61278600-61278930(+)$1	1	5	9	12.0000
))).	chr21:38528976-38529280(+)$1	1	235	239	12.0000
(((.	chr11:62288506-62288797(-)$1	1	114	118	12.0000
))))	chrM:12513-12766(+)$1	1	137	141	12.0000
).))	chr12:6692404-6692644(-)$1	1	30	34	12.0000
.)))	chr13:98667721-98667996(+)$1	1	248	252	12.0000
))))	chrM:9842-10050(+)$1	1	102	106	12.0000
))))	chr6:87970248-87970555(+)$1	1	65	69	12.0000
))).	chrM:9790-10002(+)$1	1	154	158	12.0000
..))	chr17:65900716-65900974(+)$1	1	42	46	12.0000
(.((	chr7:91623834-91624063(+)$1	1	13	17	12.0000
.)))	chr7:91631594-91631847(+)$1	1	84	88	12.0000
(((.	chr1:220195597-220195855(-)$1	1	16	20	12.0000
((.(	chr11:11964381-11964703(+)$1	1	38	42	12.0000
))))	chr7:91643462-91643696(+)$1	1	212	216	12.0000
((.(	chrM:14416-14644(-)$1	1	17	21	12.0000
))))	chr17:29195250-29195531(+)$1	1	66	70	12.0000
))))	chrM:13255-13466(+)$1	1	103	107	12.0000
.)))	chr7:26233155-26233376(-)$1	1	207	211	12.0000
((((	chrM:14367-14602(-)$1	1	35	39	12.0000
((((	chr5:33467644-33467905(+)$1	1	4	8	12.0000
..((	chr11:62298842-62299120(-)$1	1	81	85	12.0000
((..	chr16:8997030-8997358(-)$1	1	31	35	12.0000
)(((	chr2:190339931-190340257(+)$1	1	242	246	12.0000
((((	chr11:62284793-62285044(-)$1	1	36	40	12.0000
(.((	chrM:14224-14452(-)$1	1	88	92	12.0000
.(((	chr21:34931479-34931768(+)$1	1	202	206	12.0000
(..(	chr17:62498186-62498441(-)$1	1	22	26	12.0000
))))	chrM:12622-12843(+)$1	1	28	32	12.0000
....	chr7:91667875-91668120(+)$1	1	39	43	12.0000
))))	chr10:105762224-105762495(+)$1	1	34	38	12.0000
(((.	chr10:70098796-70099029(+)$1	1	66	70	12.0000
.(((	chrM:9856-10085(+)$1	1	88	92	12.0000
))).	chr2:238672616-238672920(+)$1	1	207	211	12.0000
))))	chr4:13605609-13605939(-)$1	1	41	45	12.0000
))))	chr14:56107746-56108026(+)$1	1	30	34	12.0000
))))	chrM:14452-14671(-)$1	1	23	27	12.0000
(((.	chr3:37368338-37368589(+)$1	1	180	184	12.0000
.)))	chr12:6690356-6690607(-)$1	1	190	194	12.0000
))))	chrM:9850-10056(+)$1	1	94	98	12.0000
...)	chr2:55253846-55254193(-)$1	1	35	39	12.0000
((((	chrM:12643-12853(+)$1	1	7	11	12.0000
.)).	chr1:220152740-220153016(-)$1	1	248	252	12.0000
..))	chr11:62294319-62294593(-)$1	1	114	118	12.0000

#PSSM
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	804.0000000000002
#seq	67
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_transcript_m3_run2.nuc.txt

#NT
agg	chr1:118069901-118070144(+)$1	243	25	28	9.0000
agg	chr15:75275590-75275818(-)$1	228	3	6	9.0000
AGG	chr7:148638489-148638722(+)$1	233	13	16	9.0000
AGG	chr2:106709714-106709965(-)$1	251	12	15	9.0000
agg	chr5:149477886-149478099(+)$1	213	11	14	9.0000
agg	chr14:35402619-35402849(-)$1	230	17	20	9.0000
AGG	chr6:74227976-74228179(-)$1	203	26	29	9.0000
AGG	chr9:19378773-19378978(-)$1	205	60	63	9.0000
AGG	chr17:80190704-80190946(+)$1	242	43	46	9.0000
agg	chr18:54420358-54420593(-)$1	235	146	149	9.0000
AGG	chr19:42751903-42752135(-)$1	232	4	7	9.0000
AGG	chr7:103151313-103151526(-)$1	213	170	173	9.0000
AGG	chr6:74227979-74228183(-)$1	204	30	33	9.0000
AGG	chr7:2704298-2704512(+)$1	214	181	184	9.0000
agg	chr3:193373470-193373677(+)$1	207	42	45	9.0000
AGG	chr6:74227985-74228200(-)$1	215	47	50	9.0000
AGG	chrX:153662604-153662837(+)$1	233	100	103	9.0000
AGG	chr14:50553678-50553898(+)$1	220	9	12	9.0000
AGG	chr11:47748407-47748656(-)$1	249	83	86	9.0000
agg	chr10:128609264-128609510(+)$1	246	3	6	9.0000
AGG	chr6:142740945-142741215(+)$1	270	124	127	9.0000
AGG	chr8:142412179-142412427(+)$1	248	3	6	9.0000
AGG	chr1:2171483-2171728(+)$1	245	15	18	9.0000
agg	chr3:193373477-193373687(+)$1	210	35	38	9.0000
AGG	chr9:19379384-19379586(-)$1	202	100	103	9.0000
AGG	chr1:113460434-113460660(-)$1	226	56	59	9.0000
AGG	chr9:19378708-19378945(-)$1	237	27	30	9.0000
AGG	chr9:19378798-19379017(-)$1	219	15	18	9.0000
AGG	chr3:48593819-48594108(-)$1	289	15	18	9.0000
AGG	chr7:148638529-148638737(+)$1	208	13	16	9.0000
agg	chr3:15888421-15888635(-)$1	214	142	145	9.0000
AGG	chr11:118916038-118916280(-)$1	242	43	46	9.0000
AGG	chr17:16344513-16344715(+)$1	202	166	169	9.0000
AGG	chr7:148638543-148638749(+)$1	206	26	29	9.0000
AGG	chr11:64063470-64063707(+)$1	237	6	9	9.0000
agg	chr17:43225831-43226085(+)$1	254	27	30	9.0000
AGG	chr9:19379386-19379600(-)$1	214	114	117	9.0000
agg	chr17:18965303-18965549(+)$1	246	1	4	9.0000
AGG	chr9:116971664-116971888(+)$1	224	60	63	9.0000
AGG	chr9:46141519-46141736(-)$1	217	27	30	9.0000
AGG	chr3:127872390-127872685(+)$1	295	174	177	9.0000
AGG	chr17:16344437-16344663(+)$1	226	5	8	9.0000
AGG	chr17:80190259-80190483(+)$1	224	4	7	9.0000
agg	chr3:15888413-15888621(-)$1	208	128	131	9.0000
AGG	chr14:21147564-21147769(+)$1	205	0	3	9.0000
agg	chr11:118706618-118706841(+)$1	223	19	22	9.0000
Agg	chr7:6214740-6214979(-)$1	239	43	46	9.0000
AGG	chr20:57466825-57467059(+)$1	234	5	8	9.0000
AGG	chr20:4680623-4680876(+)$1	253	4	7	9.0000
AGG	chr16:75276040-75276342(-)$1	302	9	12	9.0000
AGG	chr11:70199953-70200164(-)$1	211	27	30	9.0000
agg	chrX:64905648-64905893(+)$1	245	7	10	9.0000
AGG	chr6:74227868-74228084(-)$1	216	6	9	9.0000
AGG	chr6:25192553-25192758(+)$1	205	75	78	9.0000
AGG	chr17:38399425-38399671(+)$1	246	0	3	9.0000
AGG	chr1:28567435-28567669(+)$1	234	196	199	9.0000
agg	chr12:45581124-45581361(-)$1	237	202	205	9.0000
agg	chr20:16651190-16651395(-)$1	205	167	170	9.0000
AGG	chr13:49669490-49669733(+)$1	243	4	7	9.0000
AGG	chr6:74227884-74228088(-)$1	204	10	13	9.0000
agg	chr7:103075336-103075548(-)$1	212	156	159	9.0000
AGG	chrM:12176-12409(+)$1	233	8	11	9.0000
AGG	chr11:65402439-65402685(+)$1	246	42	45	9.0000
AGG	chr7:148638549-148638753(+)$1	204	20	23	9.0000
agg	chr14:90051965-90052203(+)$1	238	11	14	9.0000
AGG	chr6:74227857-74228068(-)$1	211	25	28	9.0000
AGG	chr9:19378759-19378973(-)$1	214	55	58	9.0000
agg	chr2:42084381-42084592(-)$1	211	1	4	9.0000
AGG	chr7:148680793-148681041(+)$1	248	18	21	9.0000
AGG	chr12:56705047-56705257(-)$1	210	20	23	9.0000
AGG	chr2:130947941-130948155(+)$1	214	25	28	9.0000
agg	chr17:34171725-34172010(+)$1	285	2	5	9.0000
AGG	chr7:99928301-99928510(-)$1	209	127	130	9.0000
AGG	chr1:113460460-113460704(-)$1	244	36	39	9.0000
AGG	chr1:240504661-240504878(+)$1	217	34	37	9.0000
Agg	chr2:206890280-206890519(+)$1	239	35	38	9.0000
agg	chr7:103075348-103075568(-)$1	220	9	12	9.0000
agg	chr2:200647958-200648181(-)$1	223	19	22	9.0000
Agg	chr19:6572871-6573088(-)$1	217	213	216	9.0000
agg	chr13:23726630-23726859(-)$1	229	1	4	9.0000
AGG	chrM:488-713(+)$1	225	164	167	9.0000
AGG	chr9:19378745-19378959(-)$1	214	41	44	9.0000
AGG	chr8:145621370-145621613(-)$1	243	49	52	9.0000
agg	chr13:50482733-50482956(-)$1	223	5	8	9.0000
AGG	chrX:117048165-117048418(-)$1	253	40	43	9.0000
AGG	chr16:81479646-81479877(+)$1	231	32	35	9.0000
AGG	chr2:130940241-130940449(+)$1	208	37	40	9.0000
AGG	chr19:42757699-42757941(-)$1	242	54	57	9.0000
AGG	chrX:41175697-41175937(+)$1	240	16	19	9.0000
AGG	chr2:132249350-132249616(-)$1	266	17	20	9.0000
AGG	chr2:132241678-132241891(-)$1	213	25	28	9.0000

#otherMatches

#Struct PSSM
f77	chr20:16651195-16651427(-)$1	232	199	202	9.0000
GGG	chr1:118069901-118070144(+)$1	243	25	28	9.0000
EE{	chr15:75275590-75275818(-)$1	228	3	6	9.0000
mmc	chr7:148638489-148638722(+)$1	233	13	16	9.0000
fff	chr2:106709714-106709965(-)$1	251	12	15	9.0000
[hh	chr5:149477886-149478099(+)$1	213	11	14	9.0000
DDD	chr14:35402619-35402849(-)$1	230	17	20	9.0000
ccc	chr6:74227976-74228179(-)$1	203	26	29	9.0000
fff	chr9:19378773-19378978(-)$1	205	60	63	9.0000
hhh	chr17:80190704-80190946(+)$1	242	43	46	9.0000
lll	chr18:54420358-54420593(-)$1	235	146	149	9.0000
FFF	chr19:42751903-42752135(-)$1	232	4	7	9.0000
ddd	chr7:103151313-103151526(-)$1	213	170	173	9.0000
22b	chr6:74227979-74228183(-)$1	204	30	33	9.0000
qqq	chr7:2704298-2704512(+)$1	214	181	184	9.0000
!!b	chr3:193373470-193373677(+)$1	207	42	45	9.0000
CCF	chr6:74227985-74228200(-)$1	215	47	50	9.0000
ddd	chrX:153662604-153662837(+)$1	233	100	103	9.0000
EEE	chr14:50553678-50553898(+)$1	220	9	12	9.0000
ggg	chr11:47748407-47748656(-)$1	249	83	86	9.0000
FFF	chr10:128609264-128609510(+)$1	246	3	6	9.0000
occ	chr6:142740945-142741215(+)$1	270	124	127	9.0000
:DD	chr8:142412179-142412427(+)$1	248	3	6	9.0000
:ff	chr1:2171483-2171728(+)$1	245	15	18	9.0000
!!b	chr3:193373477-193373687(+)$1	210	35	38	9.0000
===	chr9:19379384-19379586(-)$1	202	100	103	9.0000
DDD	chr1:113460434-113460660(-)$1	226	56	59	9.0000
FFF	chr9:19378708-19378945(-)$1	237	27	30	9.0000
EEE	chr9:19378798-19379017(-)$1	219	15	18	9.0000
$$$	chr3:48593819-48594108(-)$1	289	15	18	9.0000
ccc	chr7:148638529-148638737(+)$1	208	13	16	9.0000
GGG	chr3:15888421-15888635(-)$1	214	142	145	9.0000
ccc	chr11:118916038-118916280(-)$1	242	43	46	9.0000
f00	chr17:16344513-16344715(+)$1	202	166	169	9.0000
CCC	chr7:148638543-148638749(+)$1	206	26	29	9.0000
FFF	chr11:64063470-64063707(+)$1	237	6	9	9.0000
cc]	chr17:43225831-43226085(+)$1	254	27	30	9.0000
===	chr9:19379386-19379600(-)$1	214	114	117	9.0000
ddd	chr17:18965303-18965549(+)$1	246	1	4	9.0000
cc[	chr9:116971664-116971888(+)$1	224	60	63	9.0000
hhh	chr9:46141519-46141736(-)$1	217	27	30	9.0000
]ff	chr3:127872390-127872685(+)$1	295	174	177	9.0000
:cc	chr17:16344437-16344663(+)$1	226	5	8	9.0000
{BB	chr17:80190259-80190483(+)$1	224	4	7	9.0000
:::	chr3:15888413-15888621(-)$1	208	128	131	9.0000
:DD	chr14:21147564-21147769(+)$1	205	0	3	9.0000
mmm	chr11:118706618-118706841(+)$1	223	19	22	9.0000
CCC	chr7:6214740-6214979(-)$1	239	43	46	9.0000
KKD	chr20:57466825-57467059(+)$1	234	5	8	9.0000
FFL	chr20:4680623-4680876(+)$1	253	4	7	9.0000
GG{	chr16:75276040-75276342(-)$1	302	9	12	9.0000
"gg	chr11:70199953-70200164(-)$1	211	27	30	9.0000
CCC	chrX:64905648-64905893(+)$1	245	7	10	9.0000
ddd	chr6:74227868-74228084(-)$1	216	6	9	9.0000
vve	chr6:25192553-25192758(+)$1	205	75	78	9.0000
:::	chr17:38399425-38399671(+)$1	246	0	3	9.0000
CCC	chr1:28567435-28567669(+)$1	234	196	199	9.0000
mmb	chr12:45581124-45581361(-)$1	237	202	205	9.0000
f55	chr20:16651190-16651395(-)$1	205	167	170	9.0000
EEE	chr13:49669490-49669733(+)$1	243	4	7	9.0000
FFK	chr6:74227884-74228088(-)$1	204	10	13	9.0000
eee	chr7:103075336-103075548(-)$1	212	156	159	9.0000
:FF	chrM:12176-12409(+)$1	233	8	11	9.0000
ddd	chr11:65402439-65402685(+)$1	246	42	45	9.0000
:::	chr7:148638549-148638753(+)$1	204	20	23	9.0000
!dd	chr14:90051965-90052203(+)$1	238	11	14	9.0000
CCC	chr6:74227857-74228068(-)$1	211	25	28	9.0000
===	chr9:19378759-19378973(-)$1	214	55	58	9.0000
EEE	chr2:42084381-42084592(-)$1	211	1	4	9.0000
DDD	chr7:148680793-148681041(+)$1	248	18	21	9.0000
mmc	chr12:56705047-56705257(-)$1	210	20	23	9.0000
!an	chr2:130947941-130948155(+)$1	214	25	28	9.0000
:::	chr17:34171725-34172010(+)$1	285	2	5	9.0000
fff	chr7:99928301-99928510(-)$1	209	127	130	9.0000
!dd	chr1:113460460-113460704(-)$1	244	36	39	9.0000
fff	chr1:240504661-240504878(+)$1	217	34	37	9.0000
III	chr2:206890280-206890519(+)$1	239	35	38	9.0000
eee	chr7:103075348-103075568(-)$1	220	9	12	9.0000
:dd	chr2:200647958-200648181(-)$1	223	19	22	9.0000
:::	chr19:6572871-6573088(-)$1	217	213	216	9.0000
GGG	chr13:23726630-23726859(-)$1	229	1	4	9.0000
:HH	chrM:488-713(+)$1	225	164	167	9.0000
FFF	chr9:19378745-19378959(-)$1	214	41	44	9.0000
cc[	chr8:145621370-145621613(-)$1	243	49	52	9.0000
:EE	chr13:50482733-50482956(-)$1	223	5	8	9.0000
===	chrX:117048165-117048418(-)$1	253	40	43	9.0000
III	chr16:81479646-81479877(+)$1	231	32	35	9.0000
===	chr2:130940241-130940449(+)$1	208	37	40	9.0000
hhh	chr19:42757699-42757941(-)$1	242	54	57	9.0000
MMM	chrX:41175697-41175937(+)$1	240	16	19	9.0000
ggm	chr2:132249350-132249616(-)$1	266	17	20	9.0000
fff	chr2:132241678-132241891(-)$1	213	25	28	9.0000

#DB
)..	chr20:16651195-16651427(-)$1	1	199	202	9.0000
(((	chr1:118069901-118070144(+)$1	1	25	28	9.0000
((.	chr15:75275590-75275818(-)$1	1	3	6	9.0000
..)	chr7:148638489-148638722(+)$1	1	13	16	9.0000
(((	chr2:106709714-106709965(-)$1	1	12	15	9.0000
.((	chr5:149477886-149478099(+)$1	1	11	14	9.0000
(((	chr14:35402619-35402849(-)$1	1	17	20	9.0000
)))	chr6:74227976-74228179(-)$1	1	26	29	9.0000
)))	chr9:19378773-19378978(-)$1	1	60	63	9.0000
(((	chr17:80190704-80190946(+)$1	1	43	46	9.0000
...	chr18:54420358-54420593(-)$1	1	146	149	9.0000
(((	chr19:42751903-42752135(-)$1	1	4	7	9.0000
(((	chr7:103151313-103151526(-)$1	1	170	173	9.0000
..)	chr6:74227979-74228183(-)$1	1	30	33	9.0000
...	chr7:2704298-2704512(+)$1	1	181	184	9.0000
..(	chr3:193373470-193373677(+)$1	1	42	45	9.0000
(((	chr6:74227985-74228200(-)$1	1	47	50	9.0000
(((	chrX:153662604-153662837(+)$1	1	100	103	9.0000
(((	chr14:50553678-50553898(+)$1	1	9	12	9.0000
)))	chr11:47748407-47748656(-)$1	1	83	86	9.0000
(((	chr10:128609264-128609510(+)$1	1	3	6	9.0000
.))	chr6:142740945-142741215(+)$1	1	124	127	9.0000
.((	chr8:142412179-142412427(+)$1	1	3	6	9.0000
.((	chr1:2171483-2171728(+)$1	1	15	18	9.0000
..(	chr3:193373477-193373687(+)$1	1	35	38	9.0000
)))	chr9:19379384-19379586(-)$1	1	100	103	9.0000
(((	chr1:113460434-113460660(-)$1	1	56	59	9.0000
(((	chr9:19378708-19378945(-)$1	1	27	30	9.0000
(((	chr9:19378798-19379017(-)$1	1	15	18	9.0000
...	chr3:48593819-48594108(-)$1	1	15	18	9.0000
)))	chr7:148638529-148638737(+)$1	1	13	16	9.0000
)))	chr3:15888421-15888635(-)$1	1	142	145	9.0000
)))	chr11:118916038-118916280(-)$1	1	43	46	9.0000
)..	chr17:16344513-16344715(+)$1	1	166	169	9.0000
(((	chr7:148638543-148638749(+)$1	1	26	29	9.0000
(((	chr11:64063470-64063707(+)$1	1	6	9	9.0000
)).	chr17:43225831-43226085(+)$1	1	27	30	9.0000
)))	chr9:19379386-19379600(-)$1	1	114	117	9.0000
(((	chr17:18965303-18965549(+)$1	1	1	4	9.0000
((.	chr9:116971664-116971888(+)$1	1	60	63	9.0000
(((	chr9:46141519-46141736(-)$1	1	27	30	9.0000
.))	chr3:127872390-127872685(+)$1	1	174	177	9.0000
.((	chr17:16344437-16344663(+)$1	1	5	8	9.0000
.((	chr17:80190259-80190483(+)$1	1	4	7	9.0000
...	chr3:15888413-15888621(-)$1	1	128	131	9.0000
.((	chr14:21147564-21147769(+)$1	1	0	3	9.0000
...	chr11:118706618-118706841(+)$1	1	19	22	9.0000
(((	chr7:6214740-6214979(-)$1	1	43	46	9.0000
..(	chr20:57466825-57467059(+)$1	1	5	8	9.0000
((.	chr20:4680623-4680876(+)$1	1	4	7	9.0000
((.	chr16:75276040-75276342(-)$1	1	9	12	9.0000
.((	chr11:70199953-70200164(-)$1	1	27	30	9.0000
(((	chrX:64905648-64905893(+)$1	1	7	10	9.0000
(((	chr6:74227868-74228084(-)$1	1	6	9	9.0000
..)	chr6:25192553-25192758(+)$1	1	75	78	9.0000
...	chr17:38399425-38399671(+)$1	1	0	3	9.0000
)))	chr1:28567435-28567669(+)$1	1	196	199	9.0000
..)	chr12:45581124-45581361(-)$1	1	202	205	9.0000
)..	chr20:16651190-16651395(-)$1	1	167	170	9.0000
(((	chr13:49669490-49669733(+)$1	1	4	7	9.0000
((.	chr6:74227884-74228088(-)$1	1	10	13	9.0000
)))	chr7:103075336-103075548(-)$1	1	156	159	9.0000
.((	chrM:12176-12409(+)$1	1	8	11	9.0000
)))	chr11:65402439-65402685(+)$1	1	42	45	9.0000
...	chr7:148638549-148638753(+)$1	1	20	23	9.0000
.((	chr14:90051965-90052203(+)$1	1	11	14	9.0000
(((	chr6:74227857-74228068(-)$1	1	25	28	9.0000
)))	chr9:19378759-19378973(-)$1	1	55	58	9.0000
(((	chr2:42084381-42084592(-)$1	1	1	4	9.0000
(((	chr7:148680793-148681041(+)$1	1	18	21	9.0000
..)	chr12:56705047-56705257(-)$1	1	20	23	9.0000
.(.	chr2:130947941-130948155(+)$1	1	25	28	9.0000
...	chr17:34171725-34172010(+)$1	1	2	5	9.0000
)))	chr7:99928301-99928510(-)$1	1	127	130	9.0000
.((	chr1:113460460-113460704(-)$1	1	36	39	9.0000
(((	chr1:240504661-240504878(+)$1	1	34	37	9.0000
(((	chr2:206890280-206890519(+)$1	1	35	38	9.0000
(((	chr7:103075348-103075568(-)$1	1	9	12	9.0000
.((	chr2:200647958-200648181(-)$1	1	19	22	9.0000
...	chr19:6572871-6573088(-)$1	1	213	216	9.0000
(((	chr13:23726630-23726859(-)$1	1	1	4	9.0000
.))	chrM:488-713(+)$1	1	164	167	9.0000
(((	chr9:19378745-19378959(-)$1	1	41	44	9.0000
((.	chr8:145621370-145621613(-)$1	1	49	52	9.0000
.((	chr13:50482733-50482956(-)$1	1	5	8	9.0000
(((	chrX:117048165-117048418(-)$1	1	40	43	9.0000
(((	chr16:81479646-81479877(+)$1	1	32	35	9.0000
(((	chr2:130940241-130940449(+)$1	1	37	40	9.0000
(((	chr19:42757699-42757941(-)$1	1	54	57	9.0000
...	chrX:41175697-41175937(+)$1	1	16	19	9.0000
((.	chr2:132249350-132249616(-)$1	1	17	20	9.0000
(((	chr2:132241678-132241891(-)$1	1	25	28	9.0000

#PSSM
A : 0.72	a : 0.27	
G : 0.69	g : 0.30	
G : 0.69	g : 0.30	

#score	828.0000000000001
#seq	92
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_CDS_m3_run1.nuc.txt

#NT
CCCAG	chr12:124826404-124826666(-)$1	262	220	225	14.9999
CCCAG	chr19:2247935-2248263(+)$1	328	47	52	14.9999
CCCAG	chr14:93118219-93118481(+)$1	262	161	166	14.9999
CCCAG	chr19:54969863-54970108(+)$1	245	64	69	14.9999
CCCAG	chr12:124827456-124827704(-)$1	248	171	176	14.9999
CCCAG	chr19:42753393-42753651(-)$1	258	249	254	14.9999
CCCAG	chr17:2290624-2290942(-)$1	318	74	79	14.9999
CCCAG	chr19:54969908-54970146(+)$1	238	19	24	14.9999
cccag	chr19:45381194-45381585(+)$1	391	136	141	14.9999
CCCAG	chr4:83763367-83763664(-)$1	297	42	47	14.9999
cccag	chr9:102860977-102861226(-)$1	249	23	28	14.9999
CCCAG	chr22:41545849-41546224(+)$1	375	159	164	14.9999
CCCAG	chr17:7751291-7751586(+)$1	295	76	81	14.9999
CCCAG	chr12:7044823-7045063(+)$1	240	3	8	14.9999
CCCAG	chr17:36891705-36891954(-)$1	249	233	238	14.9999
CCCAG	chr17:27239977-27240248(-)$1	271	164	169	14.9999
cccag	chr19:7585567-7585812(+)$1	245	16	21	14.9999
cccag	chr19:7585494-7585753(+)$1	259	53	58	14.9999
CCCAG	chr16:28846398-28846608(+)$1	210	38	43	14.9999
CCCAG	chr20:2816670-2816961(-)$1	291	62	67	14.9999
CCCAG	chr1:149895334-149895640(-)$1	306	23	28	14.9999
CCCAG	chr2:54197743-54197986(-)$1	243	222	227	14.9999
CCCAG	chr1:11082221-11082479(+)$1	258	221	226	14.9999
CCCAG	chr19:15376190-15376505(-)$1	315	114	119	14.9999
CCCAG	chr1:16262372-16262647(+)$1	275	182	187	14.9999
CCCAG	chr17:7369621-7369932(-)$1	311	204	209	14.9999
CCCAG	chr16:28847281-28847547(+)$1	266	33	38	14.9999
CCCAG	chr8:22432330-22432613(+)$1	283	3	8	14.9999
cccag	chr17:7232400-7232673(-)$1	273	114	119	14.9999
CCCAG	chr7:137592906-137593218(-)$1	312	37	42	14.9999
cccag	chr16:89267498-89267724(-)$1	226	50	55	14.9999
CCCAG	chr19:41255533-41255888(-)$1	355	60	65	14.9999
CCCAG	chr1:11115757-11116044(-)$1	287	56	61	14.9999
CCCAG	chr1:27057718-27058037(+)$1	319	30	35	14.9999
CCCAG	chr22:42262924-42263189(+)$1	265	99	104	14.9999
CCCAG	chr8:144522216-144522530(-)$1	314	11	16	14.9999
CCCAG	chr5:137803420-137803725(+)$1	305	240	245	14.9999
CCCAG	chr17:76967901-76968166(-)$1	265	149	154	14.9999
CCCAG	chr7:143079958-143080235(+)$1	277	50	55	14.9999
CCCAG	chr15:81295592-81295872(+)$1	280	67	72	14.9999
CCCAG	chr2:55276859-55277169(-)$1	310	190	195	14.9999
CCCAG	chr11:61048302-61048659(-)$1	357	55	60	14.9999
CCCAG	chr19:56206586-56206912(+)$1	326	233	238	14.9999
CCCAG	chr2:153476050-153476306(+)$1	256	66	71	14.9999
CCCAG	chr5:145843184-145843459(+)$1	275	34	39	14.9999
CCCAG	chr10:104416883-104417124(+)$1	241	109	114	14.9999
CCCAG	chr1:155629751-155630044(-)$1	293	88	93	14.9999
CCCAG	chr19:4817123-4817416(-)$1	293	91	96	14.9999
CCCAG	chr1:8420528-8420795(-)$1	267	251	256	14.9999
CCCAG	chrX:153284631-153284880(-)$1	249	96	101	14.9999
CCCAG	chr19:40487097-40487370(+)$1	273	167	172	14.9999
CCCAG	chr11:62656046-62656330(+)$1	284	21	26	14.9999
cccag	chr3:47452117-47452363(+)$1	246	28	33	14.9999
CCCAG	chr19:49378973-49379274(+)$1	301	21	26	14.9999
CCCAG	chr7:149576334-149576635(+)$1	301	92	97	14.9999
CCCAG	chr19:45262663-45262962(+)$1	299	54	59	14.9999
CCCAG	chr8:145151471-145151725(+)$1	254	227	232	14.9999
CCCAG	chr17:8169805-8170182(+)$1	377	260	265	14.9999
CCCAG	chr16:67576600-67576874(+)$1	274	21	26	14.9999
CCCAG	chr22:41574574-41574880(+)$1	306	6	11	14.9999
CCCAG	chr16:2569580-2569878(+)$1	298	62	67	14.9999
CCCAG	chr12:7045465-7045743(+)$1	278	169	174	14.9999
CCCAG	chr10:11504860-11505188(-)$1	328	111	116	14.9999
CCCAG	chr3:169846551-169846866(-)$1	315	43	48	14.9999
CCCAG	chr17:42153290-42153526(+)$1	236	89	94	14.9999
CCCAG	chr14:23566788-23567097(+)$1	309	185	190	14.9999
cccag	chr19:15353665-15353939(-)$1	274	4	9	14.9999
CCCAG	chr12:6442330-6442597(-)$1	267	103	108	14.9999

#otherMatches

#Struct PSSM
::ddd	chr10:114925364-114925668(+)$1	304	98	103	14.9999
eeEEE	chr12:124826404-124826666(-)$1	262	220	225	14.9999
eeedd	chr19:2247935-2248263(+)$1	328	47	52	14.9999
[accc	chr14:93118219-93118481(+)$1	262	161	166	14.9999
mmccc	chr19:54969863-54970108(+)$1	245	64	69	14.9999
::ccc	chr12:124827456-124827704(-)$1	248	171	176	14.9999
2cccd	chr19:42753393-42753651(-)$1	258	249	254	14.9999
33ddd	chr17:2290624-2290942(-)$1	318	74	79	14.9999
:::DD	chr19:54969908-54970146(+)$1	238	19	24	14.9999
[gggg	chr19:45381194-45381585(+)$1	391	136	141	14.9999
FFFFF	chr4:83763367-83763664(-)$1	297	42	47	14.9999
eeddd	chr9:102860977-102861226(-)$1	249	23	28	14.9999
fffff	chr22:41545849-41546224(+)$1	375	159	164	14.9999
::::B	chr17:7751291-7751586(+)$1	295	76	81	14.9999
EEEEE	chr12:7044823-7045063(+)$1	240	3	8	14.9999
d333g	chr17:36891705-36891954(-)$1	249	233	238	14.9999
[accc	chr17:27239977-27240248(-)$1	271	164	169	14.9999
###bb	chr19:7585567-7585812(+)$1	245	16	21	14.9999
^^^^^	chr19:7585494-7585753(+)$1	259	53	58	14.9999
)))dd	chr16:28846398-28846608(+)$1	210	38	43	14.9999
cc22b	chr20:2816670-2816961(-)$1	291	62	67	14.9999
###cc	chr1:149895334-149895640(-)$1	306	23	28	14.9999
GGG||	chr2:54197743-54197986(-)$1	243	222	227	14.9999
fffff	chr1:11082221-11082479(+)$1	258	221	226	14.9999
ddddd	chr19:15376190-15376505(-)$1	315	114	119	14.9999
bbccc	chr1:16262372-16262647(+)$1	275	182	187	14.9999
####b	chr17:7369621-7369932(-)$1	311	204	209	14.9999
ffffe	chr16:28847281-28847547(+)$1	266	33	38	14.9999
::::b	chr8:22432330-22432613(+)$1	283	3	8	14.9999
eee]b	chr17:7232400-7232673(-)$1	273	114	119	14.9999
FKKEE	chr7:137592906-137593218(-)$1	312	37	42	14.9999
mbb]c	chr16:89267498-89267724(-)$1	226	50	55	14.9999
!dddd	chr19:41255533-41255888(-)$1	355	60	65	14.9999
"eeee	chr1:11115757-11116044(-)$1	287	56	61	14.9999
))))c	chr1:27057718-27058037(+)$1	319	30	35	14.9999
cc:dd	chr22:42262924-42263189(+)$1	265	99	104	14.9999
oooob	chr8:144522216-144522530(-)$1	314	11	16	14.9999
ZZZDD	chr5:137803420-137803725(+)$1	305	240	245	14.9999
ff$$$	chr17:76967901-76968166(-)$1	265	149	154	14.9999
44ccc	chr7:143079958-143080235(+)$1	277	50	55	14.9999
FF::c	chr15:81295592-81295872(+)$1	280	67	72	14.9999
####b	chr2:55276859-55277169(-)$1	310	190	195	14.9999
hhhhh	chr11:61048302-61048659(-)$1	357	55	60	14.9999
ffff:	chr19:56206586-56206912(+)$1	326	233	238	14.9999
FF{CC	chr2:153476050-153476306(+)$1	256	66	71	14.9999
::CCC	chr5:145843184-145843459(+)$1	275	34	39	14.9999
!ffff	chr10:104416883-104417124(+)$1	241	109	114	14.9999
cc]bb	chr1:155629751-155630044(-)$1	293	88	93	14.9999
DD:::	chr19:4817123-4817416(-)$1	293	91	96	14.9999
::::D	chr1:8420528-8420795(-)$1	267	251	256	14.9999
::::d	chrX:153284631-153284880(-)$1	249	96	101	14.9999
ggggg	chr19:40487097-40487370(+)$1	273	167	172	14.9999
:CCCB	chr11:62656046-62656330(+)$1	284	21	26	14.9999
sssss	chr3:47452117-47452363(+)$1	246	28	33	14.9999
:::DD	chr19:49378973-49379274(+)$1	301	21	26	14.9999
66666	chr7:149576334-149576635(+)$1	301	92	97	14.9999
CC{BB	chr19:45262663-45262962(+)$1	299	54	59	14.9999
b:fff	chr8:145151471-145151725(+)$1	254	227	232	14.9999
$$ddd	chr17:8169805-8170182(+)$1	377	260	265	14.9999
xxxff	chr16:67576600-67576874(+)$1	274	21	26	14.9999
e''''	chr22:41574574-41574880(+)$1	306	6	11	14.9999
deeee	chr16:2569580-2569878(+)$1	298	62	67	14.9999
^^^ee	chr12:7045465-7045743(+)$1	278	169	174	14.9999
FFFFF	chr10:11504860-11505188(-)$1	328	111	116	14.9999
{DDDD	chr3:169846551-169846866(-)$1	315	43	48	14.9999
hhhhh	chr17:42153290-42153526(+)$1	236	89	94	14.9999
666ee	chr14:23566788-23567097(+)$1	309	185	190	14.9999
{GGGG	chr19:15353665-15353939(-)$1	274	4	9	14.9999
e[bbd	chr12:6442330-6442597(-)$1	267	103	108	14.9999

#DB
..(((	chr10:114925364-114925668(+)$1	1	98	103	14.9999
)))))	chr12:124826404-124826666(-)$1	1	220	225	14.9999
(((((	chr19:2247935-2248263(+)$1	1	47	52	14.9999
.((((	chr14:93118219-93118481(+)$1	1	161	166	14.9999
..)))	chr19:54969863-54970108(+)$1	1	64	69	14.9999
..(((	chr12:124827456-124827704(-)$1	1	171	176	14.9999
.))))	chr19:42753393-42753651(-)$1	1	249	254	14.9999
..)))	chr17:2290624-2290942(-)$1	1	74	79	14.9999
...((	chr19:54969908-54970146(+)$1	1	19	24	14.9999
.((((	chr19:45381194-45381585(+)$1	1	136	141	14.9999
(((((	chr4:83763367-83763664(-)$1	1	42	47	14.9999
)))))	chr9:102860977-102861226(-)$1	1	23	28	14.9999
)))))	chr22:41545849-41546224(+)$1	1	159	164	14.9999
....(	chr17:7751291-7751586(+)$1	1	76	81	14.9999
(((((	chr12:7044823-7045063(+)$1	1	3	8	14.9999
)...)	chr17:36891705-36891954(-)$1	1	233	238	14.9999
.((((	chr17:27239977-27240248(-)$1	1	164	169	14.9999
...((	chr19:7585567-7585812(+)$1	1	16	21	14.9999
.....	chr19:7585494-7585753(+)$1	1	53	58	14.9999
...((	chr16:28846398-28846608(+)$1	1	38	43	14.9999
))..)	chr20:2816670-2816961(-)$1	1	62	67	14.9999
...((	chr1:149895334-149895640(-)$1	1	23	28	14.9999
)))..	chr2:54197743-54197986(-)$1	1	222	227	14.9999
)))))	chr1:11082221-11082479(+)$1	1	221	226	14.9999
)))))	chr19:15376190-15376505(-)$1	1	114	119	14.9999
(((((	chr1:16262372-16262647(+)$1	1	182	187	14.9999
....(	chr17:7369621-7369932(-)$1	1	204	209	14.9999
)))))	chr16:28847281-28847547(+)$1	1	33	38	14.9999
....(	chr8:22432330-22432613(+)$1	1	3	8	14.9999
))).)	chr17:7232400-7232673(-)$1	1	114	119	14.9999
(..((	chr7:137592906-137593218(-)$1	1	37	42	14.9999
.)).)	chr16:89267498-89267724(-)$1	1	50	55	14.9999
.((((	chr19:41255533-41255888(-)$1	1	60	65	14.9999
.((((	chr1:11115757-11116044(-)$1	1	56	61	14.9999
....(	chr1:27057718-27058037(+)$1	1	30	35	14.9999
)).((	chr22:42262924-42263189(+)$1	1	99	104	14.9999
....)	chr8:144522216-144522530(-)$1	1	11	16	14.9999
...))	chr5:137803420-137803725(+)$1	1	240	245	14.9999
((...	chr17:76967901-76968166(-)$1	1	149	154	14.9999
..)))	chr7:143079958-143080235(+)$1	1	50	55	14.9999
((..(	chr15:81295592-81295872(+)$1	1	67	72	14.9999
....(	chr2:55276859-55277169(-)$1	1	190	195	14.9999
(((((	chr11:61048302-61048659(-)$1	1	55	60	14.9999
)))).	chr19:56206586-56206912(+)$1	1	233	238	14.9999
((.((	chr2:153476050-153476306(+)$1	1	66	71	14.9999
..(((	chr5:145843184-145843459(+)$1	1	34	39	14.9999
.((((	chr10:104416883-104417124(+)$1	1	109	114	14.9999
)).))	chr1:155629751-155630044(-)$1	1	88	93	14.9999
((...	chr19:4817123-4817416(-)$1	1	91	96	14.9999
....)	chr1:8420528-8420795(-)$1	1	251	256	14.9999
....(	chrX:153284631-153284880(-)$1	1	96	101	14.9999
)))))	chr19:40487097-40487370(+)$1	1	167	172	14.9999
.((((	chr11:62656046-62656330(+)$1	1	21	26	14.9999
.....	chr3:47452117-47452363(+)$1	1	28	33	14.9999
...((	chr19:49378973-49379274(+)$1	1	21	26	14.9999
.....	chr7:149576334-149576635(+)$1	1	92	97	14.9999
((.((	chr19:45262663-45262962(+)$1	1	54	59	14.9999
).(((	chr8:145151471-145151725(+)$1	1	227	232	14.9999
..(((	chr17:8169805-8170182(+)$1	1	260	265	14.9999
...))	chr16:67576600-67576874(+)$1	1	21	26	14.9999
(....	chr22:41574574-41574880(+)$1	1	6	11	14.9999
)))))	chr16:2569580-2569878(+)$1	1	62	67	14.9999
...))	chr12:7045465-7045743(+)$1	1	169	174	14.9999
(((((	chr10:11504860-11505188(-)$1	1	111	116	14.9999
.((((	chr3:169846551-169846866(-)$1	1	43	48	14.9999
)))))	chr17:42153290-42153526(+)$1	1	89	94	14.9999
...))	chr14:23566788-23567097(+)$1	1	185	190	14.9999
.((((	chr19:15353665-15353939(-)$1	1	4	9	14.9999
(.(((	chr12:6442330-6442597(-)$1	1	103	108	14.9999

#PSSM
C : 0.88	c : 0.11	
C : 0.88	c : 0.11	
C : 0.88	c : 0.11	
A : 0.88	a : 0.11	
G : 0.88	g : 0.11	

#score	1034.9999999999995
#seq	69
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_UTR_m3_run2.nuc.txt

#NT
GGAG	chr2:103352955-103353224(-)$1	269	5	9	11.9999
GGAG	chr17:18161801-18162056(-)$1	255	54	58	11.9999
GGAG	chr2:138727658-138727919(+)$1	261	80	84	11.9999
GGAG	chr1:2080241-2080508(+)$1	267	118	122	11.9999
GGAG	chr20:42187685-42187938(+)$1	253	103	107	11.9999
GGAG	chrX:153059558-153059820(-)$1	262	19	23	11.9999
GGAG	chr16:30092491-30092762(+)$1	271	103	107	11.9999
GGAG	chr2:220082693-220082949(-)$1	256	149	153	11.9999
GGAG	chr2:113321916-113322219(+)$1	303	43	47	11.9999
GGAG	chr16:9014083-9014337(-)$1	254	114	118	11.9999
GGAG	chr17:38151075-38151326(+)$1	251	154	158	11.9999
ggag	chr2:241558324-241558579(+)$1	255	29	33	11.9999
GGAG	chr17:46970093-46970347(+)$1	254	44	48	11.9999
GGAG	chr17:80674661-80674967(+)$1	306	55	59	11.9999
GGAG	chr5:43313312-43313580(-)$1	268	16	20	11.9999
GGAG	chr7:128851488-128851834(+)$1	346	69	73	11.9999
GGAG	chr17:61766069-61766353(+)$1	284	231	235	11.9999
GGAG	chr19:2228277-2228523(+)$1	246	208	212	11.9999
GGAG	chr11:71189389-71189626(+)$1	237	77	81	11.9999
GGAG	chr11:61732722-61732984(-)$1	262	68	72	11.9999
GGAG	chr2:64245928-64246194(-)$1	266	35	39	11.9999
GGAG	chr17:76120903-76121145(-)$1	242	24	28	11.9999
GGAG	chr19:1269302-1269554(+)$1	252	43	47	11.9999
GGAG	chr2:61415873-61416148(-)$1	275	141	145	11.9999
GGAG	chr3:50293625-50293919(+)$1	294	13	17	11.9999
GGAG	chr16:4498729-4499010(+)$1	281	82	86	11.9999
GGAG	chr11:499678-499979(-)$1	301	55	59	11.9999
GGAG	chr3:48456065-48456312(-)$1	247	85	89	11.9999
GGAG	chr20:45022472-45022756(-)$1	284	138	142	11.9999
GGAG	chr4:16175699-16175979(-)$1	280	115	119	11.9999
GGAG	chr2:27597917-27598139(+)$1	222	99	103	11.9999
GGAG	chr12:123465759-123465990(+)$1	231	82	86	11.9999
GGAG	chr11:71940157-71940391(+)$1	234	55	59	11.9999
GGAG	chr8:17780569-17780843(+)$1	274	106	110	11.9999
GGAG	chr15:50716586-50716845(+)$1	259	70	74	11.9999
GGAG	chr12:133252978-133253236(-)$1	258	228	232	11.9999
GGAG	chr7:100160464-100160680(+)$1	216	203	207	11.9999
GGAG	chr8:141756719-141756977(-)$1	258	0	4	11.9999
GGAG	chr17:26874286-26874566(-)$1	280	274	278	11.9999
GGAG	chr16:2125791-2126035(+)$1	244	48	52	11.9999
GGAG	chr1:32833851-32834170(-)$1	319	47	51	11.9999
GGAG	chr2:241511853-241512128(+)$1	275	253	257	11.9999
GGAG	chr8:97321698-97321970(+)$1	272	171	175	11.9999
GGAG	chr1:228584481-228584809(-)$1	328	2	6	11.9999
GGAG	chr18:10736479-10736811(-)$1	332	109	113	11.9999
GGAG	chr2:219516279-219516531(-)$1	252	36	40	11.9999
GGAG	chr19:50163835-50164088(-)$1	253	67	71	11.9999
GGAG	chr20:23401829-23402076(-)$1	247	54	58	11.9999
GGAG	chr19:3547982-3548237(-)$1	255	53	57	11.9999
GGAG	chr2:42531568-42531833(+)$1	265	8	12	11.9999
GGAG	chr2:219144606-219144850(-)$1	244	23	27	11.9999
GGAG	chr8:21951923-21952187(+)$1	264	62	66	11.9999
GGAG	chr1:115300396-115300701(-)$1	305	59	63	11.9999
GGAG	chr5:177557940-177558276(+)$1	336	134	138	11.9999
GGAG	chr20:3827426-3827697(+)$1	271	206	210	11.9999
GGAG	chr14:102549886-102550124(-)$1	238	210	214	11.9999
GGAG	chr3:183892646-183892897(+)$1	251	58	62	11.9999
GGAG	chr18:23670270-23670566(-)$1	296	74	78	11.9999
GGAG	chr10:70286844-70287124(-)$1	280	67	71	11.9999
GGAG	chr18:2752415-2752670(+)$1	255	195	199	11.9999
GGAG	chr20:33502124-33502371(+)$1	247	226	230	11.9999
GGAG	chr19:56173876-56174117(+)$1	241	104	108	11.9999
GGAG	chr15:85652233-85652488(+)$1	255	77	81	11.9999
GGAG	chr9:130213841-130214082(+)$1	241	43	47	11.9999
GGAG	chr15:75743613-75743883(-)$1	270	150	154	11.9999
GGAG	chr6:71195817-71196081(+)$1	264	11	15	11.9999
GGAG	chr3:51575533-51575793(+)$1	260	22	26	11.9999
GGAG	chr11:61050117-61050386(-)$1	269	135	139	11.9999
GGAG	chr11:65304105-65304354(+)$1	249	221	225	11.9999
GGAG	chr19:1271959-1272199(+)$1	240	22	26	11.9999
GGAG	chr6:31912696-31912946(+)$1	250	59	63	11.9999
GGAG	chr10:6131051-6131332(+)$1	281	39	43	11.9999
GGAG	chr3:10320613-10320895(+)$1	282	117	121	11.9999
GGAG	chr16:70363863-70364122(+)$1	259	171	175	11.9999

#otherMatches

#Struct PSSM
DD{B	chr12:6657445-6657705(-)$1	260	36	40	11.9999
EEEE	chr2:103352955-103353224(-)$1	269	5	9	11.9999
ccoo	chr17:18161801-18162056(-)$1	255	54	58	11.9999
ssss	chr2:138727658-138727919(+)$1	261	80	84	11.9999
iiii	chr1:2080241-2080508(+)$1	267	118	122	11.9999
DDDD	chr20:42187685-42187938(+)$1	253	103	107	11.9999
bbmm	chrX:153059558-153059820(-)$1	262	19	23	11.9999
ffff	chr16:30092491-30092762(+)$1	271	103	107	11.9999
B???	chr2:220082693-220082949(-)$1	256	149	153	11.9999
FFFF	chr2:113321916-113322219(+)$1	303	43	47	11.9999
eeee	chr16:9014083-9014337(-)$1	254	114	118	11.9999
====	chr17:38151075-38151326(+)$1	251	154	158	11.9999
e[am	chr2:241558324-241558579(+)$1	255	29	33	11.9999
cc55	chr17:46970093-46970347(+)$1	254	44	48	11.9999
F:::	chr17:80674661-80674967(+)$1	306	55	59	11.9999
C{DD	chr5:43313312-43313580(-)$1	268	16	20	11.9999
oooo	chr7:128851488-128851834(+)$1	346	69	73	11.9999
fffJ	chr17:61766069-61766353(+)$1	284	231	235	11.9999
HHHH	chr19:2228277-2228523(+)$1	246	208	212	11.9999
fffn	chr11:71189389-71189626(+)$1	237	77	81	11.9999
iiii	chr11:61732722-61732984(-)$1	262	68	72	11.9999
e!!c	chr2:64245928-64246194(-)$1	266	35	39	11.9999
eeee	chr17:76120903-76121145(-)$1	242	24	28	11.9999
qqqq	chr19:1269302-1269554(+)$1	252	43	47	11.9999
DDDA	chr2:61415873-61416148(-)$1	275	141	145	11.9999
c!!b	chr3:50293625-50293919(+)$1	294	13	17	11.9999
:::E	chr16:4498729-4499010(+)$1	281	82	86	11.9999
gg!!	chr11:499678-499979(-)$1	301	55	59	11.9999
gggg	chr3:48456065-48456312(-)$1	247	85	89	11.9999
D{CC	chr20:45022472-45022756(-)$1	284	138	142	11.9999
ddd2	chr4:16175699-16175979(-)$1	280	115	119	11.9999
hhhh	chr2:27597917-27598139(+)$1	222	99	103	11.9999
]a33	chr12:123465759-123465990(+)$1	231	82	86	11.9999
ee[b	chr11:71940157-71940391(+)$1	234	55	59	11.9999
BB::	chr8:17780569-17780843(+)$1	274	106	110	11.9999
bb[c	chr15:50716586-50716845(+)$1	259	70	74	11.9999
gttt	chr12:133252978-133253236(-)$1	258	228	232	11.9999
ggg]	chr7:100160464-100160680(+)$1	216	203	207	11.9999
:::E	chr8:141756719-141756977(-)$1	258	0	4	11.9999
dd:B	chr17:26874286-26874566(-)$1	280	274	278	11.9999
ddcc	chr16:2125791-2126035(+)$1	244	48	52	11.9999
HH{E	chr1:32833851-32834170(-)$1	319	47	51	11.9999
ffff	chr2:241511853-241512128(+)$1	275	253	257	11.9999
a]ee	chr8:97321698-97321970(+)$1	272	171	175	11.9999
FFFF	chr1:228584481-228584809(-)$1	328	2	6	11.9999
IIII	chr18:10736479-10736811(-)$1	332	109	113	11.9999
lllb	chr2:219516279-219516531(-)$1	252	36	40	11.9999
eee[	chr19:50163835-50164088(-)$1	253	67	71	11.9999
hhhh	chr20:23401829-23402076(-)$1	247	54	58	11.9999
ffll	chr19:3547982-3548237(-)$1	255	53	57	11.9999
eeee	chr2:42531568-42531833(+)$1	265	8	12	11.9999
HHHH	chr2:219144606-219144850(-)$1	244	23	27	11.9999
e22b	chr8:21951923-21952187(+)$1	264	62	66	11.9999
ff[b	chr1:115300396-115300701(-)$1	305	59	63	11.9999
JJJ:	chr5:177557940-177558276(+)$1	336	134	138	11.9999
llld	chr20:3827426-3827697(+)$1	271	206	210	11.9999
GGGG	chr14:102549886-102550124(-)$1	238	210	214	11.9999
F:::	chr3:183892646-183892897(+)$1	251	58	62	11.9999
eeee	chr18:23670270-23670566(-)$1	296	74	78	11.9999
ffff	chr10:70286844-70287124(-)$1	280	67	71	11.9999
>ddd	chr18:2752415-2752670(+)$1	255	195	199	11.9999
ffff	chr20:33502124-33502371(+)$1	247	226	230	11.9999
FFFF	chr19:56173876-56174117(+)$1	241	104	108	11.9999
HHHB	chr15:85652233-85652488(+)$1	255	77	81	11.9999
CC::	chr9:130213841-130214082(+)$1	241	43	47	11.9999
mmmg	chr15:75743613-75743883(-)$1	270	150	154	11.9999
dd[b	chr6:71195817-71196081(+)$1	264	11	15	11.9999
eeee	chr3:51575533-51575793(+)$1	260	22	26	11.9999
IIII	chr11:61050117-61050386(-)$1	269	135	139	11.9999
ffff	chr11:65304105-65304354(+)$1	249	221	225	11.9999
[ddd	chr19:1271959-1272199(+)$1	240	22	26	11.9999
====	chr6:31912696-31912946(+)$1	250	59	63	11.9999
bb[e	chr10:6131051-6131332(+)$1	281	39	43	11.9999
&ddd	chr3:10320613-10320895(+)$1	282	117	121	11.9999
gg[b	chr16:70363863-70364122(+)$1	259	171	175	11.9999

#DB
((.(	chr12:6657445-6657705(-)$1	1	36	40	11.9999
((((	chr2:103352955-103353224(-)$1	1	5	9	11.9999
((..	chr17:18161801-18162056(-)$1	1	54	58	11.9999
....	chr2:138727658-138727919(+)$1	1	80	84	11.9999
((((	chr1:2080241-2080508(+)$1	1	118	122	11.9999
((((	chr20:42187685-42187938(+)$1	1	103	107	11.9999
((..	chrX:153059558-153059820(-)$1	1	19	23	11.9999
))))	chr16:30092491-30092762(+)$1	1	103	107	11.9999
)...	chr2:220082693-220082949(-)$1	1	149	153	11.9999
((((	chr2:113321916-113322219(+)$1	1	43	47	11.9999
))))	chr16:9014083-9014337(-)$1	1	114	118	11.9999
((((	chr17:38151075-38151326(+)$1	1	154	158	11.9999
(.(.	chr2:241558324-241558579(+)$1	1	29	33	11.9999
))..	chr17:46970093-46970347(+)$1	1	44	48	11.9999
(...	chr17:80674661-80674967(+)$1	1	55	59	11.9999
(.((	chr5:43313312-43313580(-)$1	1	16	20	11.9999
....	chr7:128851488-128851834(+)$1	1	69	73	11.9999
))))	chr17:61766069-61766353(+)$1	1	231	235	11.9999
))))	chr19:2228277-2228523(+)$1	1	208	212	11.9999
(((.	chr11:71189389-71189626(+)$1	1	77	81	11.9999
))))	chr11:61732722-61732984(-)$1	1	68	72	11.9999
(..(	chr2:64245928-64246194(-)$1	1	35	39	11.9999
))))	chr17:76120903-76121145(-)$1	1	24	28	11.9999
....	chr19:1269302-1269554(+)$1	1	43	47	11.9999
((((	chr2:61415873-61416148(-)$1	1	141	145	11.9999
(..(	chr3:50293625-50293919(+)$1	1	13	17	11.9999
...(	chr16:4498729-4499010(+)$1	1	82	86	11.9999
((..	chr11:499678-499979(-)$1	1	55	59	11.9999
((((	chr3:48456065-48456312(-)$1	1	85	89	11.9999
(.((	chr20:45022472-45022756(-)$1	1	138	142	11.9999
))).	chr4:16175699-16175979(-)$1	1	115	119	11.9999
((((	chr2:27597917-27598139(+)$1	1	99	103	11.9999
.)..	chr12:123465759-123465990(+)$1	1	82	86	11.9999
((.(	chr11:71940157-71940391(+)$1	1	55	59	11.9999
((..	chr8:17780569-17780843(+)$1	1	106	110	11.9999
((.(	chr15:50716586-50716845(+)$1	1	70	74	11.9999
(...	chr12:133252978-133253236(-)$1	1	228	232	11.9999
))).	chr7:100160464-100160680(+)$1	1	203	207	11.9999
...(	chr8:141756719-141756977(-)$1	1	0	4	11.9999
)).)	chr17:26874286-26874566(-)$1	1	274	278	11.9999
))))	chr16:2125791-2126035(+)$1	1	48	52	11.9999
((.(	chr1:32833851-32834170(-)$1	1	47	51	11.9999
))))	chr2:241511853-241512128(+)$1	1	253	257	11.9999
).))	chr8:97321698-97321970(+)$1	1	171	175	11.9999
((((	chr1:228584481-228584809(-)$1	1	2	6	11.9999
((((	chr18:10736479-10736811(-)$1	1	109	113	11.9999
...)	chr2:219516279-219516531(-)$1	1	36	40	11.9999
(((.	chr19:50163835-50164088(-)$1	1	67	71	11.9999
((((	chr20:23401829-23402076(-)$1	1	54	58	11.9999
((..	chr19:3547982-3548237(-)$1	1	53	57	11.9999
((((	chr2:42531568-42531833(+)$1	1	8	12	11.9999
((((	chr2:219144606-219144850(-)$1	1	23	27	11.9999
)..)	chr8:21951923-21952187(+)$1	1	62	66	11.9999
((.(	chr1:115300396-115300701(-)$1	1	59	63	11.9999
(((.	chr5:177557940-177558276(+)$1	1	134	138	11.9999
...)	chr20:3827426-3827697(+)$1	1	206	210	11.9999
))))	chr14:102549886-102550124(-)$1	1	210	214	11.9999
(...	chr3:183892646-183892897(+)$1	1	58	62	11.9999
((((	chr18:23670270-23670566(-)$1	1	74	78	11.9999
))))	chr10:70286844-70287124(-)$1	1	67	71	11.9999
.)))	chr18:2752415-2752670(+)$1	1	195	199	11.9999
))))	chr20:33502124-33502371(+)$1	1	226	230	11.9999
))))	chr19:56173876-56174117(+)$1	1	104	108	11.9999
((((	chr15:85652233-85652488(+)$1	1	77	81	11.9999
((..	chr9:130213841-130214082(+)$1	1	43	47	11.9999
...)	chr15:75743613-75743883(-)$1	1	150	154	11.9999
((.(	chr6:71195817-71196081(+)$1	1	11	15	11.9999
))))	chr3:51575533-51575793(+)$1	1	22	26	11.9999
))))	chr11:61050117-61050386(-)$1	1	135	139	11.9999
((((	chr11:65304105-65304354(+)$1	1	221	225	11.9999
.(((	chr19:1271959-1272199(+)$1	1	22	26	11.9999
))))	chr6:31912696-31912946(+)$1	1	59	63	11.9999
((.(	chr10:6131051-6131332(+)$1	1	39	43	11.9999
.(((	chr3:10320613-10320895(+)$1	1	117	121	11.9999
((.(	chr16:70363863-70364122(+)$1	1	171	175	11.9999

#PSSM
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	

#score	899.9999999999995
#seq	75
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_UTR_m3_run1.nuc.txt

#NT
GUUU	chr12:54680337-54680559(+)$1	222	48	52	11.9999
GUUU	chr17:57917011-57917260(+)$1	249	16	20	11.9999
GUUU	chr10:70136622-70136908(-)$1	286	34	38	11.9999
GUUU	chr12:62954555-62954819(+)$1	264	174	178	11.9999
GUUU	chr11:64535628-64535882(-)$1	254	82	86	11.9999
GUUU	chr17:29551999-29552289(+)$1	290	12	16	11.9999
GUUU	chr1:222906335-222906547(+)$1	212	8	12	11.9999
GUUU	chr9:95014023-95014276(-)$1	253	76	80	11.9999
GUUU	chr11:64540840-64541088(-)$1	248	48	52	11.9999
GUUU	chr12:54680359-54680591(+)$1	232	26	30	11.9999
GUUU	chr4:56461448-56461685(-)$1	237	165	169	11.9999
GUUU	chrX:129283413-129283656(-)$1	243	99	103	11.9999
GUUU	chr1:226053543-226053780(-)$1	237	17	21	11.9999
GUUU	chr7:26230678-26230944(-)$1	266	19	23	11.9999
GUUU	chr14:35498380-35498646(+)$1	266	36	40	11.9999
GUUU	chr3:20016982-20017259(+)$1	277	46	50	11.9999
Guuu	chr3:152881369-152881617(+)$1	248	54	58	11.9999
GUUU	chr14:103801890-103802130(+)$1	240	33	37	11.9999
GUUU	chr7:50793588-50793841(-)$1	253	232	236	11.9999
GUUU	chr17:62498198-62498409(-)$1	211	24	28	11.9999
GUUU	chr6:57005990-57006266(+)$1	276	44	48	11.9999
GUUU	chr2:152293233-152293494(+)$1	261	11	15	11.9999
GUUU	chr14:81940066-81940313(-)$1	247	151	155	11.9999
GUUU	chr2:54114965-54115216(-)$1	251	190	194	11.9999
GUUU	chr1:70697436-70697718(+)$1	282	191	195	11.9999
GUUU	chr17:48817555-48817801(+)$1	246	196	200	11.9999
GUUU	chr3:186505480-186505727(+)$1	247	69	73	11.9999
GUUU	chr12:112506667-112506917(-)$1	250	24	28	11.9999
GUUU	chr3:195794378-195794640(-)$1	262	64	68	11.9999
guuu	chr18:12986719-12987043(+)$1	324	30	34	11.9999
GUUU	chr6:135299765-135300062(-)$1	297	44	48	11.9999
GUUU	chr5:94884275-94884526(-)$1	251	115	119	11.9999
GUUU	chr18:55226356-55226628(-)$1	272	7	11	11.9999
GUUU	chr22:19398138-19398413(-)$1	275	2	6	11.9999
GUUU	chr6:26138166-26138435(+)$1	269	41	45	11.9999
GUUU	chr19:12833201-12833471(-)$1	270	0	4	11.9999
GUUU	chr11:130014462-130014721(+)$1	259	85	89	11.9999
GUUU	chr6:87964257-87964504(+)$1	247	219	223	11.9999
GUUU	chr1:151611249-151611516(+)$1	267	34	38	11.9999
GUUU	chr11:62651810-62652040(+)$1	230	42	46	11.9999
GUUU	chr11:33182807-33183020(-)$1	213	78	82	11.9999
GUUU	chr12:132197950-132198203(+)$1	253	8	12	11.9999
guuu	chr3:43740899-43741138(+)$1	239	199	203	11.9999
GUUU	chr12:21661180-21661463(+)$1	283	74	78	11.9999
GUUU	chr7:148513703-148513940(-)$1	237	18	22	11.9999
GUUU	chr20:57242432-57242686(+)$1	254	236	240	11.9999
GUUU	chr1:155883999-155884258(-)$1	259	129	133	11.9999
GUUU	chr6:4064914-4065178(+)$1	264	17	21	11.9999
GUUU	chr16:21629076-21629332(+)$1	256	130	134	11.9999
GUUU	chr5:138979850-138980113(+)$1	263	2	6	11.9999
GUUU	chr1:70696662-70696947(+)$1	285	197	201	11.9999
GUUU	chr20:34294960-34295227(-)$1	267	21	25	11.9999
GUUU	chr1:222906347-222906584(+)$1	237	27	31	11.9999
GUUU	chr1:183481861-183482110(+)$1	249	61	65	11.9999
GUUU	chr5:65449177-65449427(+)$1	250	76	80	11.9999
GUUU	chr13:96638556-96638805(-)$1	249	6	10	11.9999
GUUU	chr17:34161456-34161707(+)$1	251	36	40	11.9999
GUUU	chr4:79791818-79792064(+)$1	246	100	104	11.9999
GUUU	chr7:30407069-30407363(+)$1	294	24	28	11.9999
GUUU	chr17:56083205-56083439(-)$1	234	179	183	11.9999
GUUU	chr18:9104018-9104240(+)$1	222	57	61	11.9999
GUUU	chr1:207532781-207533043(+)$1	262	118	122	11.9999
GUUU	chr11:33307849-33308101(+)$1	252	12	16	11.9999
GUUU	chr2:101885570-101885825(+)$1	255	133	137	11.9999
GUUU	chr12:131361369-131361617(+)$1	248	7	11	11.9999
guuu	chr16:88783886-88784138(-)$1	252	86	90	11.9999
GUUU	chr6:30618930-30619192(+)$1	262	57	61	11.9999
GUUU	chr22:20073098-20073368(+)$1	270	69	73	11.9999
GUUU	chr6:112397199-112397463(-)$1	264	5	9	11.9999
GUUU	chrX:79928634-79928885(-)$1	251	41	45	11.9999
GUUU	chr12:69667900-69668188(+)$1	288	72	76	11.9999
GUUU	chr14:23795058-23795286(+)$1	228	12	16	11.9999
GUUU	chr22:19462974-19463241(-)$1	267	23	27	11.9999
GUUU	chr2:234178535-234178780(+)$1	245	207	211	11.9999
GUUU	chr17:54985785-54986036(-)$1	251	99	103	11.9999
GUUU	chr11:47189424-47189723(-)$1	299	11	15	11.9999
GUUU	chr1:36411178-36411430(+)$1	252	6	10	11.9999
GUUU	chr18:9104055-9104269(+)$1	214	20	24	11.9999

#otherMatches

#Struct PSSM
fff:	chr7:99697242-99697483(-)$1	241	83	87	11.9999
c[ff	chr12:54680337-54680559(+)$1	222	48	52	11.9999
DLLL	chr17:57917011-57917260(+)$1	249	16	20	11.9999
::::	chr10:70136622-70136908(-)$1	286	34	38	11.9999
dd::	chr12:62954555-62954819(+)$1	264	174	178	11.9999
hhhh	chr11:64535628-64535882(-)$1	254	82	86	11.9999
JJJ:	chr17:29551999-29552289(+)$1	290	12	16	11.9999
a[cc	chr1:222906335-222906547(+)$1	212	8	12	11.9999
sssc	chr9:95014023-95014276(-)$1	253	76	80	11.9999
QQQQ	chr11:64540840-64541088(-)$1	248	48	52	11.9999
DDDD	chr12:54680359-54680591(+)$1	232	26	30	11.9999
ii]d	chr4:56461448-56461685(-)$1	237	165	169	11.9999
e:::	chrX:129283413-129283656(-)$1	243	99	103	11.9999
iiii	chr1:226053543-226053780(-)$1	237	17	21	11.9999
iiii	chr7:26230678-26230944(-)$1	266	19	23	11.9999
::::	chr14:35498380-35498646(+)$1	266	36	40	11.9999
====	chr3:20016982-20017259(+)$1	277	46	50	11.9999
]===	chr3:152881369-152881617(+)$1	248	54	58	11.9999
]ccc	chr14:103801890-103802130(+)$1	240	33	37	11.9999
ffff	chr7:50793588-50793841(-)$1	253	232	236	11.9999
eee#	chr17:62498198-62498409(-)$1	211	24	28	11.9999
nnnn	chr6:57005990-57006266(+)$1	276	44	48	11.9999
++++	chr2:152293233-152293494(+)$1	261	11	15	11.9999
dddd	chr14:81940066-81940313(-)$1	247	151	155	11.9999
dd[c	chr2:54114965-54115216(-)$1	251	190	194	11.9999
d]gg	chr1:70697436-70697718(+)$1	282	191	195	11.9999
2ddd	chr17:48817555-48817801(+)$1	246	196	200	11.9999
bb::	chr3:186505480-186505727(+)$1	247	69	73	11.9999
ffff	chr12:112506667-112506917(-)$1	250	24	28	11.9999
ALLL	chr3:195794378-195794640(-)$1	262	64	68	11.9999
DD::	chr18:12986719-12987043(+)$1	324	30	34	11.9999
e444	chr6:135299765-135300062(-)$1	297	44	48	11.9999
iiii	chr5:94884275-94884526(-)$1	251	115	119	11.9999
[ccc	chr18:55226356-55226628(-)$1	272	7	11	11.9999
::::	chr22:19398138-19398413(-)$1	275	2	6	11.9999
++++	chr6:26138166-26138435(+)$1	269	41	45	11.9999
::::	chr19:12833201-12833471(-)$1	270	0	4	11.9999
FFFF	chr11:130014462-130014721(+)$1	259	85	89	11.9999
bbnn	chr6:87964257-87964504(+)$1	247	219	223	11.9999
GGGG	chr1:151611249-151611516(+)$1	267	34	38	11.9999
d!!c	chr11:62651810-62652040(+)$1	230	42	46	11.9999
ddd^	chr11:33182807-33183020(-)$1	213	78	82	11.9999
eeee	chr12:132197950-132198203(+)$1	253	8	12	11.9999
occc	chr3:43740899-43741138(+)$1	239	199	203	11.9999
DDDD	chr12:21661180-21661463(+)$1	283	74	78	11.9999
:GGG	chr7:148513703-148513940(-)$1	237	18	22	11.9999
oooo	chr20:57242432-57242686(+)$1	254	236	240	11.9999
aqqq	chr1:155883999-155884258(-)$1	259	129	133	11.9999
dnnn	chr6:4064914-4065178(+)$1	264	17	21	11.9999
"fff	chr16:21629076-21629332(+)$1	256	130	134	11.9999
EEEE	chr5:138979850-138980113(+)$1	263	2	6	11.9999
uuuu	chr1:70696662-70696947(+)$1	285	197	201	11.9999
c"""	chr20:34294960-34295227(-)$1	267	21	25	11.9999
FFMM	chr1:222906347-222906584(+)$1	237	27	31	11.9999
::::	chr1:183481861-183482110(+)$1	249	61	65	11.9999
bggg	chr5:65449177-65449427(+)$1	250	76	80	11.9999
:FFF	chr13:96638556-96638805(-)$1	249	6	10	11.9999
f:::	chr17:34161456-34161707(+)$1	251	36	40	11.9999
gggg	chr4:79791818-79792064(+)$1	246	100	104	11.9999
::::	chr7:30407069-30407363(+)$1	294	24	28	11.9999
]eee	chr17:56083205-56083439(-)$1	234	179	183	11.9999
HHHH	chr18:9104018-9104240(+)$1	222	57	61	11.9999
dddp	chr1:207532781-207533043(+)$1	262	118	122	11.9999
FFFF	chr11:33307849-33308101(+)$1	252	12	16	11.9999
JJJJ	chr2:101885570-101885825(+)$1	255	133	137	11.9999
GGGK	chr12:131361369-131361617(+)$1	248	7	11	11.9999
qqdd	chr16:88783886-88784138(-)$1	252	86	90	11.9999
lllc	chr6:30618930-30619192(+)$1	262	57	61	11.9999
ff[b	chr22:20073098-20073368(+)$1	270	69	73	11.9999
dddd	chr6:112397199-112397463(-)$1	264	5	9	11.9999
eess	chrX:79928634-79928885(-)$1	251	41	45	11.9999
bbqq	chr12:69667900-69668188(+)$1	288	72	76	11.9999
mmmm	chr14:23795058-23795286(+)$1	228	12	16	11.9999
$$$$	chr22:19462974-19463241(-)$1	267	23	27	11.9999
eeee	chr2:234178535-234178780(+)$1	245	207	211	11.9999
::::	chr17:54985785-54986036(-)$1	251	99	103	11.9999
GGGG	chr11:47189424-47189723(-)$1	299	11	15	11.9999
bb[d	chr1:36411178-36411430(+)$1	252	6	10	11.9999
HHHH	chr18:9104055-9104269(+)$1	214	20	24	11.9999

#DB
))).	chr7:99697242-99697483(-)$1	1	83	87	11.9999
(.((	chr12:54680337-54680559(+)$1	1	48	52	11.9999
(...	chr17:57917011-57917260(+)$1	1	16	20	11.9999
....	chr10:70136622-70136908(-)$1	1	34	38	11.9999
))..	chr12:62954555-62954819(+)$1	1	174	178	11.9999
))))	chr11:64535628-64535882(-)$1	1	82	86	11.9999
(((.	chr17:29551999-29552289(+)$1	1	12	16	11.9999
(.((	chr1:222906335-222906547(+)$1	1	8	12	11.9999
...)	chr9:95014023-95014276(-)$1	1	76	80	11.9999
....	chr11:64540840-64541088(-)$1	1	48	52	11.9999
((((	chr12:54680359-54680591(+)$1	1	26	30	11.9999
)).)	chr4:56461448-56461685(-)$1	1	165	169	11.9999
)...	chrX:129283413-129283656(-)$1	1	99	103	11.9999
((((	chr1:226053543-226053780(-)$1	1	17	21	11.9999
((((	chr7:26230678-26230944(-)$1	1	19	23	11.9999
....	chr14:35498380-35498646(+)$1	1	36	40	11.9999
((((	chr3:20016982-20017259(+)$1	1	46	50	11.9999
.)))	chr3:152881369-152881617(+)$1	1	54	58	11.9999
.)))	chr14:103801890-103802130(+)$1	1	33	37	11.9999
))))	chr7:50793588-50793841(-)$1	1	232	236	11.9999
(((.	chr17:62498198-62498409(-)$1	1	24	28	11.9999
....	chr6:57005990-57006266(+)$1	1	44	48	11.9999
....	chr2:152293233-152293494(+)$1	1	11	15	11.9999
))))	chr14:81940066-81940313(-)$1	1	151	155	11.9999
((.(	chr2:54114965-54115216(-)$1	1	190	194	11.9999
).))	chr1:70697436-70697718(+)$1	1	191	195	11.9999
.)))	chr17:48817555-48817801(+)$1	1	196	200	11.9999
))..	chr3:186505480-186505727(+)$1	1	69	73	11.9999
))))	chr12:112506667-112506917(-)$1	1	24	28	11.9999
(...	chr3:195794378-195794640(-)$1	1	64	68	11.9999
((..	chr18:12986719-12987043(+)$1	1	30	34	11.9999
)...	chr6:135299765-135300062(-)$1	1	44	48	11.9999
((((	chr5:94884275-94884526(-)$1	1	115	119	11.9999
.(((	chr18:55226356-55226628(-)$1	1	7	11	11.9999
....	chr22:19398138-19398413(-)$1	1	2	6	11.9999
....	chr6:26138166-26138435(+)$1	1	41	45	11.9999
....	chr19:12833201-12833471(-)$1	1	0	4	11.9999
((((	chr11:130014462-130014721(+)$1	1	85	89	11.9999
((..	chr6:87964257-87964504(+)$1	1	219	223	11.9999
((((	chr1:151611249-151611516(+)$1	1	34	38	11.9999
(..(	chr11:62651810-62652040(+)$1	1	42	46	11.9999
(((.	chr11:33182807-33183020(-)$1	1	78	82	11.9999
((((	chr12:132197950-132198203(+)$1	1	8	12	11.9999
.)))	chr3:43740899-43741138(+)$1	1	199	203	11.9999
((((	chr12:21661180-21661463(+)$1	1	74	78	11.9999
.(((	chr7:148513703-148513940(-)$1	1	18	22	11.9999
....	chr20:57242432-57242686(+)$1	1	236	240	11.9999
(...	chr1:155883999-155884258(-)$1	1	129	133	11.9999
(...	chr6:4064914-4065178(+)$1	1	17	21	11.9999
.(((	chr16:21629076-21629332(+)$1	1	130	134	11.9999
((((	chr5:138979850-138980113(+)$1	1	2	6	11.9999
....	chr1:70696662-70696947(+)$1	1	197	201	11.9999
(...	chr20:34294960-34295227(-)$1	1	21	25	11.9999
((..	chr1:222906347-222906584(+)$1	1	27	31	11.9999
....	chr1:183481861-183482110(+)$1	1	61	65	11.9999
))))	chr5:65449177-65449427(+)$1	1	76	80	11.9999
.(((	chr13:96638556-96638805(-)$1	1	6	10	11.9999
)...	chr17:34161456-34161707(+)$1	1	36	40	11.9999
))))	chr4:79791818-79792064(+)$1	1	100	104	11.9999
....	chr7:30407069-30407363(+)$1	1	24	28	11.9999
.)))	chr17:56083205-56083439(-)$1	1	179	183	11.9999
((((	chr18:9104018-9104240(+)$1	1	57	61	11.9999
(((.	chr1:207532781-207533043(+)$1	1	118	122	11.9999
((((	chr11:33307849-33308101(+)$1	1	12	16	11.9999
))))	chr2:101885570-101885825(+)$1	1	133	137	11.9999
(((.	chr12:131361369-131361617(+)$1	1	7	11	11.9999
..))	chr16:88783886-88784138(-)$1	1	86	90	11.9999
...)	chr6:30618930-30619192(+)$1	1	57	61	11.9999
((.(	chr22:20073098-20073368(+)$1	1	69	73	11.9999
((((	chr6:112397199-112397463(-)$1	1	5	9	11.9999
((..	chrX:79928634-79928885(-)$1	1	41	45	11.9999
((..	chr12:69667900-69668188(+)$1	1	72	76	11.9999
....	chr14:23795058-23795286(+)$1	1	12	16	11.9999
....	chr22:19462974-19463241(-)$1	1	23	27	11.9999
))))	chr2:234178535-234178780(+)$1	1	207	211	11.9999
....	chr17:54985785-54986036(-)$1	1	99	103	11.9999
((((	chr11:47189424-47189723(-)$1	1	11	15	11.9999
((.(	chr1:36411178-36411430(+)$1	1	6	10	11.9999
((((	chr18:9104055-9104269(+)$1	1	20	24	11.9999

#PSSM
G : 0.96	g : 0.03	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	

#score	947.9999999999998
#seq	79
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_transcript_m2_run2.nuc.txt

#NT
GAGGAA	chr2:46926423-46926685(+)$1	262	15	21	13.9459
GAGGAG	chr3:49377254-49377583(-)$1	329	120	126	15.3648
GAGGAG	chr17:40270284-40270521(-)$1	237	116	122	15.3648
GAGGAG	chr19:12876839-12877152(-)$1	313	171	177	15.3648
GAGGAC	chr11:377081-377407(+)$1	326	25	31	14.2162
GAGGAU	chr13:113508537-113508812(+)$1	275	211	217	13.4729
GAGGAG	chr19:959697-959952(+)$1	255	16	22	15.3648
GAGGAG	chr14:24652893-24653170(-)$1	277	126	132	15.3648
GAGGAA	chr6:7303759-7303971(-)$1	212	113	119	13.9459
GAGGAA	chr16:31200914-31201184(+)$1	270	3	9	13.9459
GAGGAG	chr12:122196522-122196799(+)$1	277	15	21	15.3648
GAGGAC	chr11:72407521-72407798(-)$1	277	104	110	14.2162
GAGGAC	chr16:2050924-2051300(-)$1	376	115	121	14.2162
GAGGAG	chr12:108930367-108930651(-)$1	284	107	113	15.3648
GAGGAA	chr2:101924533-101924784(-)$1	251	120	126	13.9459
GAGGAC	chr18:11981535-11981842(+)$1	307	148	154	14.2162
GAGGAG	chr10:135170055-135170339(-)$1	284	258	264	15.3648
GAGGAA	chr14:23559639-23559888(-)$1	249	52	58	13.9459
GAGGAG	chr14:69619447-69619734(-)$1	287	44	50	15.3648
GAGGAG	chr16:84215081-84215355(-)$1	274	28	34	15.3648
GAGGAG	chr11:65267888-65268092(+)$1	204	66	72	15.3648
GAGGAG	chr2:219561723-219562007(+)$1	284	128	134	15.3648
GAGGAG	chr14:23770546-23770839(-)$1	293	266	272	15.3648
GAGGAC	chr11:62105361-62105726(+)$1	365	8	14	14.2162
gaggaa	chr11:129991486-129991709(+)$1	223	151	157	13.9459
GAGGAG	chr14:24034219-24034440(-)$1	221	74	80	15.3648
GAGGAC	chr1:17913853-17914139(+)$1	286	145	151	14.2162
GAGGAG	chr19:56658260-56658555(+)$1	295	284	290	15.3648
GAGGAC	chr2:238990617-238990872(+)$1	255	191	197	14.2162
GAGGAA	chr2:233684435-233684669(+)$1	234	158	164	13.9459
gaggau	chr20:31017296-31017564(+)$1	268	143	149	13.4729
GAGGAA	chr20:47850073-47850357(+)$1	284	4	10	13.9459
GAGGAG	chr7:2262243-2262491(-)$1	248	171	177	15.3648
GAGGAA	chr19:8509855-8510095(+)$1	240	81	87	13.9459
GAGGAG	chr9:100881223-100881578(-)$1	355	92	98	15.3648
GAGGAG	chr16:84215706-84216021(-)$1	315	78	84	15.3648
GAGGAU	chr9:111691966-111692225(-)$1	259	66	72	13.4729
GAGGAC	chr12:132414356-132414607(+)$1	251	198	204	14.2162
GAGGAC	chr2:97296939-97297238(-)$1	299	164	170	14.2162
GAGGAU	chr4:83350300-83350573(-)$1	273	90	96	13.4729
GAGGAA	chr1:150198845-150199110(-)$1	265	3	9	13.9459
gaggag	chr19:10670886-10671168(-)$1	282	128	134	15.3648
GAGGAG	chr20:25457557-25457824(-)$1	267	0	6	15.3648
gaggag	chr5:10391674-10391950(+)$1	276	93	99	15.3648
GAGGAA	chr11:429457-429719(-)$1	262	141	147	13.9459
GAGGAG	chr2:232576581-232576793(+)$1	212	12	18	15.3648
GAGGAG	chr6:30520213-30520528(-)$1	315	161	167	15.3648
GAGGAC	chr14:35344239-35344511(-)$1	272	98	104	14.2162
GAGGAG	chr1:87380707-87380969(+)$1	262	114	120	15.3648
GAGGAG	chr20:44599879-44600220(-)$1	341	174	180	15.3648
GAGGAC	chr15:75194943-75195230(-)$1	287	172	178	14.2162
GAGGAC	chr2:128050979-128051246(-)$1	267	2	8	14.2162
GAGGAA	chr13:50989125-50989426(+)$1	301	126	132	13.9459
GAGGAC	chr15:49913144-49913444(+)$1	300	155	161	14.2162
GAGGAG	chr2:75937680-75938102(-)$1	422	187	193	15.3648
gaggag	chr10:76781725-76782038(+)$1	313	108	114	15.3648
GAGGAA	chr14:104145645-104145929(+)$1	284	204	210	13.9459
GAGGAU	chr9:100774602-100774832(+)$1	230	136	142	13.4729
GAGGAU	chr16:70076731-70076966(-)$1	235	18	24	13.4729
GAGGAU	chr17:2267251-2267528(+)$1	277	104	110	13.4729
GAGGAC	chr9:97767762-97768028(+)$1	266	194	200	14.2162
GAGGAG	chr1:39456853-39457114(+)$1	261	137	143	15.3648
gaggag	chr2:29169427-29169687(+)$1	260	56	62	15.3648
GAGGAG	chr10:35103703-35103955(-)$1	252	232	238	15.3648
GAGGAG	chr5:177631521-177631777(+)$1	256	80	86	15.3648
GAGGAA	chr17:38184998-38185252(-)$1	254	176	182	13.9459
GAGGAG	chr17:79988403-79988718(+)$1	315	188	194	15.3648
GAGGAC	chr11:71189335-71189617(+)$1	282	132	138	14.2162
GAGGAG	chr3:196663763-196664058(-)$1	295	142	148	15.3648
GAGGAC	chr2:99224670-99225001(-)$1	331	148	154	14.2162
GAGGAC	chr16:31199130-31199407(+)$1	277	229	235	14.2162
gaggag	chr12:6878988-6879251(+)$1	263	98	104	15.3648
GAGGAG	chr21:16437148-16437410(-)$1	262	36	42	15.3648

#otherMatches

#Struct PSSM
dddd[d	chr1:90460586-90460975(+)$1	389	239	245	14.2162
f::::e	chr2:46926423-46926685(+)$1	262	15	21	13.9459
KKDDDD	chr3:49377254-49377583(-)$1	329	120	126	15.3648
dd22dd	chr17:40270284-40270521(-)$1	237	116	122	15.3648
b:GGGG	chr19:12876839-12877152(-)$1	313	171	177	15.3648
qqqqqq	chr11:377081-377407(+)$1	326	25	31	14.2162
~DDDD:	chr13:113508537-113508812(+)$1	275	211	217	13.4729
DDDDD{	chr19:959697-959952(+)$1	255	16	22	15.3648
ffffff	chr14:24652893-24653170(-)$1	277	126	132	15.3648
fff]bb	chr6:7303759-7303971(-)$1	212	113	119	13.9459
ffff##	chr16:31200914-31201184(+)$1	270	3	9	13.9459
g[bb[b	chr12:122196522-122196799(+)$1	277	15	21	15.3648
::bbbb	chr11:72407521-72407798(-)$1	277	104	110	14.2162
a]dddd	chr16:2050924-2051300(-)$1	376	115	121	14.2162
gggddd	chr12:108930367-108930651(-)$1	284	107	113	15.3648
[cccmm	chr2:101924533-101924784(-)$1	251	120	126	13.9459
333a]b	chr18:11981535-11981842(+)$1	307	148	154	14.2162
nnneee	chr10:135170055-135170339(-)$1	284	258	264	15.3648
======	chr14:23559639-23559888(-)$1	249	52	58	13.9459
EEEEMM	chr14:69619447-69619734(-)$1	287	44	50	15.3648
A{IIII	chr16:84215081-84215355(-)$1	274	28	34	15.3648
mmmmbb	chr11:65267888-65268092(+)$1	204	66	72	15.3648
GGGGGG	chr2:219561723-219562007(+)$1	284	128	134	15.3648
CCCCZZ	chr14:23770546-23770839(-)$1	293	266	272	15.3648
{BB{BB	chr11:62105361-62105726(+)$1	365	8	14	14.2162
dddd::	chr11:129991486-129991709(+)$1	223	151	157	13.9459
ddd!!a	chr14:24034219-24034440(-)$1	221	74	80	15.3648
a[eeee	chr1:17913853-17914139(+)$1	286	145	151	14.2162
ZZIIII	chr19:56658260-56658555(+)$1	295	284	290	15.3648
eeeea]	chr2:238990617-238990872(+)$1	255	191	197	14.2162
::::::	chr2:233684435-233684669(+)$1	234	158	164	13.9459
eeffff	chr20:31017296-31017564(+)$1	268	143	149	13.4729
{CCCMM	chr20:47850073-47850357(+)$1	284	4	10	13.9459
444ccc	chr7:2262243-2262491(-)$1	248	171	177	15.3648
GGG:::	chr19:8509855-8510095(+)$1	240	81	87	13.9459
===22c	chr9:100881223-100881578(-)$1	355	92	98	15.3648
cfffff	chr16:84215706-84216021(-)$1	315	78	84	15.3648
gggg%%	chr9:111691966-111692225(-)$1	259	66	72	13.4729
C}DDDD	chr12:132414356-132414607(+)$1	251	198	204	14.2162
cmmmmc	chr2:97296939-97297238(-)$1	299	164	170	14.2162
fff:::	chr4:83350300-83350573(-)$1	273	90	96	13.4729
::::::	chr1:150198845-150199110(-)$1	265	3	9	13.9459
fffffB	chr19:10670886-10671168(-)$1	282	128	134	15.3648
::ffff	chr20:25457557-25457824(-)$1	267	0	6	15.3648
a!!fff	chr5:10391674-10391950(+)$1	276	93	99	15.3648
b:::::	chr11:429457-429719(-)$1	262	141	147	13.9459
cppppp	chr2:232576581-232576793(+)$1	212	12	18	15.3648
JJJJJJ	chr6:30520213-30520528(-)$1	315	161	167	15.3648
ffffoo	chr14:35344239-35344511(-)$1	272	98	104	14.2162
eebbmm	chr1:87380707-87380969(+)$1	262	114	120	15.3648
c]bb44	chr20:44599879-44600220(-)$1	341	174	180	15.3648
tttttt	chr15:75194943-75195230(-)$1	287	172	178	14.2162
EEEEKK	chr2:128050979-128051246(-)$1	267	2	8	14.2162
DDDD{H	chr13:50989125-50989426(+)$1	301	126	132	13.9459
[ccc!!	chr15:49913144-49913444(+)$1	300	155	161	14.2162
nnnnna	chr2:75937680-75938102(-)$1	422	187	193	15.3648
^^^^^^	chr10:76781725-76782038(+)$1	313	108	114	15.3648
d]gggg	chr14:104145645-104145929(+)$1	284	204	210	13.9459
FFEEEE	chr9:100774602-100774832(+)$1	230	136	142	13.4729
GGGG::	chr16:70076731-70076966(-)$1	235	18	24	13.4729
fffff3	chr17:2267251-2267528(+)$1	277	104	110	13.4729
eeqqqq	chr9:97767762-97768028(+)$1	266	194	200	14.2162
22bb]f	chr1:39456853-39457114(+)$1	261	137	143	15.3648
cc]iii	chr2:29169427-29169687(+)$1	260	56	62	15.3648
YYEEEE	chr10:35103703-35103955(-)$1	252	232	238	15.3648
ddd!!a	chr5:177631521-177631777(+)$1	256	80	86	15.3648
[ccc!!	chr17:38184998-38185252(-)$1	254	176	182	13.9459
gggggg	chr17:79988403-79988718(+)$1	315	188	194	15.3648
]eeeee	chr11:71189335-71189617(+)$1	282	132	138	14.2162
IIIIIB	chr3:196663763-196664058(-)$1	295	142	148	15.3648
^^^^^^	chr2:99224670-99225001(-)$1	331	148	154	14.2162
f%%%%%	chr16:31199130-31199407(+)$1	277	229	235	14.2162
gggg]d	chr12:6878988-6879251(+)$1	263	98	104	15.3648
B{CCCC	chr21:16437148-16437410(-)$1	262	36	42	15.3648

#DB
((((.(	chr1:90460586-90460975(+)$1	1	239	245	14.2162
)....(	chr2:46926423-46926685(+)$1	1	15	21	13.9459
..((((	chr3:49377254-49377583(-)$1	1	120	126	15.3648
))..))	chr17:40270284-40270521(-)$1	1	116	122	15.3648
).))))	chr19:12876839-12877152(-)$1	1	171	177	15.3648
......	chr11:377081-377407(+)$1	1	25	31	14.2162
.)))).	chr13:113508537-113508812(+)$1	1	211	217	13.4729
(((((.	chr19:959697-959952(+)$1	1	16	22	15.3648
))))))	chr14:24652893-24653170(-)$1	1	126	132	15.3648
))).))	chr6:7303759-7303971(-)$1	1	113	119	13.9459
((((..	chr16:31200914-31201184(+)$1	1	3	9	13.9459
(.((.(	chr12:122196522-122196799(+)$1	1	15	21	15.3648
..((((	chr11:72407521-72407798(-)$1	1	104	110	14.2162
).))))	chr16:2050924-2051300(-)$1	1	115	121	14.2162
)))(((	chr12:108930367-108930651(-)$1	1	107	113	15.3648
.(((..	chr2:101924533-101924784(-)$1	1	120	126	13.9459
...).)	chr18:11981535-11981842(+)$1	1	148	154	14.2162
...)))	chr10:135170055-135170339(-)$1	1	258	264	15.3648
))))))	chr14:23559639-23559888(-)$1	1	52	58	13.9459
((((..	chr14:69619447-69619734(-)$1	1	44	50	15.3648
(.((((	chr16:84215081-84215355(-)$1	1	28	34	15.3648
....))	chr11:65267888-65268092(+)$1	1	66	72	15.3648
((((((	chr2:219561723-219562007(+)$1	1	128	134	15.3648
))))..	chr14:23770546-23770839(-)$1	1	266	272	15.3648
.((.((	chr11:62105361-62105726(+)$1	1	8	14	14.2162
))))..	chr11:129991486-129991709(+)$1	1	151	157	13.9459
(((..(	chr14:24034219-24034440(-)$1	1	74	80	15.3648
(.((((	chr1:17913853-17914139(+)$1	1	145	151	14.2162
..))))	chr19:56658260-56658555(+)$1	1	284	290	15.3648
))))).	chr2:238990617-238990872(+)$1	1	191	197	14.2162
......	chr2:233684435-233684669(+)$1	1	158	164	13.9459
((((((	chr20:31017296-31017564(+)$1	1	143	149	13.4729
.(((..	chr20:47850073-47850357(+)$1	1	4	10	13.9459
...)))	chr7:2262243-2262491(-)$1	1	171	177	15.3648
(((...	chr19:8509855-8510095(+)$1	1	81	87	13.9459
)))..)	chr9:100881223-100881578(-)$1	1	92	98	15.3648
)(((((	chr16:84215706-84216021(-)$1	1	78	84	15.3648
((((..	chr9:111691966-111692225(-)$1	1	66	72	13.4729
).))))	chr12:132414356-132414607(+)$1	1	198	204	14.2162
(....)	chr2:97296939-97297238(-)$1	1	164	170	14.2162
)))...	chr4:83350300-83350573(-)$1	1	90	96	13.4729
......	chr1:150198845-150199110(-)$1	1	3	9	13.9459
))))))	chr19:10670886-10671168(-)$1	1	128	134	15.3648
..((((	chr20:25457557-25457824(-)$1	1	0	6	15.3648
(..(((	chr5:10391674-10391950(+)$1	1	93	99	15.3648
).....	chr11:429457-429719(-)$1	1	141	147	13.9459
(.....	chr2:232576581-232576793(+)$1	1	12	18	15.3648
))))))	chr6:30520213-30520528(-)$1	1	161	167	15.3648
((((..	chr14:35344239-35344511(-)$1	1	98	104	14.2162
))((..	chr1:87380707-87380969(+)$1	1	114	120	15.3648
).))..	chr20:44599879-44600220(-)$1	1	174	180	15.3648
......	chr15:75194943-75195230(-)$1	1	172	178	14.2162
((((..	chr2:128050979-128051246(-)$1	1	2	8	14.2162
((((.(	chr13:50989125-50989426(+)$1	1	126	132	13.9459
.(((..	chr15:49913144-49913444(+)$1	1	155	161	14.2162
.....)	chr2:75937680-75938102(-)$1	1	187	193	15.3648
......	chr10:76781725-76782038(+)$1	1	108	114	15.3648
).))))	chr14:104145645-104145929(+)$1	1	204	210	13.9459
((((((	chr9:100774602-100774832(+)$1	1	136	142	13.4729
((((..	chr16:70076731-70076966(-)$1	1	18	24	13.4729
))))).	chr17:2267251-2267528(+)$1	1	104	110	13.4729
((....	chr9:97767762-97768028(+)$1	1	194	200	14.2162
..)).)	chr1:39456853-39457114(+)$1	1	137	143	15.3648
)).)))	chr2:29169427-29169687(+)$1	1	56	62	15.3648
..))))	chr10:35103703-35103955(-)$1	1	232	238	15.3648
(((..(	chr5:177631521-177631777(+)$1	1	80	86	15.3648
.(((..	chr17:38184998-38185252(-)$1	1	176	182	13.9459
))))))	chr17:79988403-79988718(+)$1	1	188	194	15.3648
.)))))	chr11:71189335-71189617(+)$1	1	132	138	14.2162
))))))	chr3:196663763-196664058(-)$1	1	142	148	15.3648
......	chr2:99224670-99225001(-)$1	1	148	154	14.2162
(.....	chr16:31199130-31199407(+)$1	1	229	235	14.2162
)))).)	chr12:6878988-6879251(+)$1	1	98	104	15.3648
(.((((	chr21:16437148-16437410(-)$1	1	36	42	15.3648

#PSSM
G : 0.90	g : 0.09	
A : 0.90	a : 0.09	
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	
A : 0.90	a : 0.09	
G : 0.40	C : 0.24	A : 0.17	U : 0.08	g : 0.06	a : 0.01	u : 0.01	

#score	1083.216216216216
#seq	74
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_UTR_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
::::::::::::::::::::::::::::::EEEEEFFFFFFFFFFFFLLLCCC:::ddddssssssssssdddd::::ccc!!ccc[hhhhhhhhlllhhhhhhhhccc]ccchhhhhhhh[bba!!cccmmmmccc22a]bb333hhhhhhhh:::::::::CCCYYFFFFFF~~~~FFFFFF:::::::::::::::::ccc!!ddddoooooodddd]ccc:::::::::EEEEE::ggggggg!!eeeee[dddd"""cccnnnnnccc333ddddeeeeeggggggg::	chr17:48828947-48829247(+)$1	300	0	294	882.0000

#DB
..............................(((((((((((((((((...(((...((((..........))))....(((..(((.((((((((...))))))))))).)))((((((((.(((..(((....)))..).))...)))))))).........)))..))))))....)))))).................(((..((((......)))).))).........)))))..(((((((..(((((.((((...(((.....)))...))))))))))))))))..	chr17:48828947-48829247(+)$1	1	0	294	882.0000

#PSSM
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	

#score	882.0
#seq	1
#width	294
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_transcript_m3_run2.nuc.txt

#NT
AGGA	chr11:65267744-65267948(+)$1	204	95	99	12.0000
agga	chr21:38839475-38839707(+)$1	232	85	89	12.0000
agga	chr7:158570157-158570423(-)$1	266	78	82	12.0000
agga	chr3:152057867-152058133(+)$1	266	5	9	12.0000
AGGA	chr1:61097520-61097843(-)$1	323	5	9	12.0000
agga	chr1:145661523-145661773(+)$1	250	14	18	12.0000
AGGA	chr3:42679728-42679994(+)$1	266	96	100	12.0000
AGGA	chr17:79544201-79544455(-)$1	254	52	56	12.0000
AGGA	chr11:5443360-5443645(-)$1	285	72	76	12.0000
agga	chr11:5479960-5480209(-)$1	249	60	64	12.0000
AGGA	chr11:65267573-65267779(+)$1	206	69	73	12.0000
AGGA	chr1:155451016-155451285(-)$1	269	115	119	12.0000
AGGA	chr19:34876277-34876514(+)$1	237	48	52	12.0000
AGGA	chr17:20787401-20787648(+)$1	247	35	39	12.0000
AGGA	chr11:65268137-65268340(+)$1	203	16	20	12.0000
agga	chr18:2736181-2736475(+)$1	294	75	79	12.0000
agga	chr7:119539839-119540165(-)$1	326	284	288	12.0000
AGGA	chr19:28935253-28935516(-)$1	263	78	82	12.0000
AGGA	chr3:42679138-42679394(+)$1	256	134	138	12.0000
AGGA	chr11:65268081-65268291(+)$1	210	1	5	12.0000
AGGA	chr2:145247234-145247489(-)$1	255	13	17	12.0000
agga	chr20:33615128-33615437(-)$1	309	74	78	12.0000
agga	chr19:29105920-29106161(+)$1	241	134	138	12.0000
AGGA	chr1:40882815-40883030(+)$1	215	136	140	12.0000
agga	chr7:158568905-158569234(-)$1	329	204	208	12.0000
AGGA	chr11:65268100-65268307(+)$1	207	53	57	12.0000
AGGA	chr1:219371137-219371404(+)$1	267	90	94	12.0000
AGGA	chr11:65267495-65267698(+)$1	203	147	151	12.0000
AGGA	chr12:133393450-133393791(-)$1	341	44	48	12.0000
AGGA	chr3:160150795-160151038(+)$1	243	66	70	12.0000
AGGA	chr11:65268118-65268329(+)$1	211	35	39	12.0000
AGGA	chr22:50018568-50018896(-)$1	328	50	54	12.0000
agga	chr7:119436991-119437300(-)$1	309	138	142	12.0000
agga	chr1:29506014-29506307(-)$1	293	219	223	12.0000
AGGA	chr11:65268033-65268238(+)$1	205	2	6	12.0000
AGGA	chr11:65267720-65267927(+)$1	207	23	27	12.0000
agga	chr21:47950841-47951162(+)$1	321	69	73	12.0000
agga	chr7:129101925-129102239(+)$1	314	52	56	12.0000
AGGA	chr17:20787728-20787984(+)$1	256	220	224	12.0000
AGGA	chr22:23607238-23607521(+)$1	283	95	99	12.0000
agga	chr7:65366559-65366855(+)$1	296	81	85	12.0000
agga	chr7:119537360-119537646(-)$1	286	85	89	12.0000
AGGA	chr11:5423936-5424208(-)$1	272	116	120	12.0000
AGGA	chr1:22008543-22008862(-)$1	319	70	74	12.0000
AGGA	chr5:6723870-6724140(+)$1	270	32	36	12.0000
AGGA	chr3:195419964-195420239(+)$1	275	46	50	12.0000
AGGA	chr11:65267943-65268159(+)$1	216	5	9	12.0000
agga	chr16:20687414-20687675(+)$1	261	38	42	12.0000
agga	chr14:102268121-102268375(+)$1	254	128	132	12.0000
AGGA	chr11:65267709-65267920(+)$1	211	34	38	12.0000
agga	chr21:39470757-39471033(-)$1	276	176	180	12.0000
AGGA	chr11:65267585-65267801(+)$1	216	57	61	12.0000
AGGA	chr11:5489486-5489786(-)$1	300	21	25	12.0000
agga	chr17:20772722-20772965(+)$1	243	78	82	12.0000
agga	chr22:48162717-48163010(+)$1	293	224	228	12.0000
agga	chr22:48185232-48185532(+)$1	300	273	277	12.0000
AGGA	chr6:4032031-4032329(+)$1	298	97	101	12.0000
AGGA	chr9:126028580-126028841(-)$1	261	34	38	12.0000
AGGA	chr16:88584155-88584469(+)$1	314	110	114	12.0000
AGGA	chr11:65268008-65268218(+)$1	210	19	23	12.0000
AGGA	chr11:65267697-65267902(+)$1	205	46	50	12.0000
agga	chr1:29505859-29506145(-)$1	286	57	61	12.0000
AGGA	chr1:203767153-203767404(+)$1	251	83	87	12.0000
AGGA	chr1:231173421-231173697(-)$1	276	193	197	12.0000
agga	chr7:119491470-119491772(-)$1	302	169	173	12.0000
agga	chr7:153097827-153098088(-)$1	261	32	36	12.0000
AGGA	chr1:29504170-29504443(-)$1	273	49	53	12.0000
agga	chr1:213176109-213176350(-)$1	241	96	100	12.0000
AGGA	chr11:65267526-65267735(+)$1	209	116	120	12.0000
AGGA	chr11:65267542-65267756(+)$1	214	100	104	12.0000
agga	chr7:119346584-119346837(-)$1	253	60	64	12.0000
agga	chr1:91984569-91984859(+)$1	290	188	192	12.0000
agga	chr2:97559811-97560058(-)$1	247	105	109	12.0000
AGGA	chr11:65267702-65267909(+)$1	207	41	45	12.0000
AGGA	chr1:241797240-241797475(-)$1	235	25	29	12.0000
AGGA	chr11:65268162-65268376(+)$1	214	17	21	12.0000
AGGA	chr9:133482986-133483276(+)$1	290	19	23	12.0000
AGGA	chr11:65267727-65267936(+)$1	209	16	20	12.0000
AGGA	chr11:65267566-65267773(+)$1	207	76	80	12.0000
AGGA	chr11:65268006-65268208(+)$1	202	21	25	12.0000
agga	chr2:168767336-168767626(-)$1	290	40	44	12.0000
AGGA	chr17:68105720-68106031(-)$1	311	35	39	12.0000
agga	chr7:158567999-158568263(-)$1	264	115	119	12.0000

#otherMatches

#Struct PSSM
JJJJ	chr9:136148942-136149228(-)$1	286	58	62	12.0000
[bb!	chr11:65267744-65267948(+)$1	204	95	99	12.0000
ffff	chr21:38839475-38839707(+)$1	232	85	89	12.0000
::::	chr7:158570157-158570423(-)$1	266	78	82	12.0000
:::g	chr3:152057867-152058133(+)$1	266	5	9	12.0000
bb!!	chr1:61097520-61097843(-)$1	323	5	9	12.0000
OBB{	chr1:145661523-145661773(+)$1	250	14	18	12.0000
~CCC	chr3:42679728-42679994(+)$1	266	96	100	12.0000
::::	chr17:79544201-79544455(-)$1	254	52	56	12.0000
IIII	chr11:5443360-5443645(-)$1	285	72	76	12.0000
Jccc	chr11:5479960-5480209(-)$1	249	60	64	12.0000
::::	chr11:65267573-65267779(+)$1	206	69	73	12.0000
dsss	chr1:155451016-155451285(-)$1	269	115	119	12.0000
hhhh	chr19:34876277-34876514(+)$1	237	48	52	12.0000
!!ee	chr17:20787401-20787648(+)$1	247	35	39	12.0000
F:::	chr11:65268137-65268340(+)$1	203	16	20	12.0000
:::d	chr18:2736181-2736475(+)$1	294	75	79	12.0000
gggg	chr7:119539839-119540165(-)$1	326	284	288	12.0000
clll	chr19:28935253-28935516(-)$1	263	78	82	12.0000
44dd	chr3:42679138-42679394(+)$1	256	134	138	12.0000
CCC{	chr11:65268081-65268291(+)$1	210	1	5	12.0000
IIII	chr2:145247234-145247489(-)$1	255	13	17	12.0000
dd33	chr20:33615128-33615437(-)$1	309	74	78	12.0000
hhhh	chr19:29105920-29106161(+)$1	241	134	138	12.0000
eeee	chr1:40882815-40883030(+)$1	215	136	140	12.0000
dddd	chr7:158568905-158569234(-)$1	329	204	208	12.0000
a[bb	chr11:65268100-65268307(+)$1	207	53	57	12.0000
22gg	chr1:219371137-219371404(+)$1	267	90	94	12.0000
bb33	chr11:65267495-65267698(+)$1	203	147	151	12.0000
EEEE	chr12:133393450-133393791(-)$1	341	44	48	12.0000
]bb3	chr3:160150795-160151038(+)$1	243	66	70	12.0000
F:::	chr11:65268118-65268329(+)$1	211	35	39	12.0000
bsss	chr22:50018568-50018896(-)$1	328	50	54	12.0000
000e	chr7:119436991-119437300(-)$1	309	138	142	12.0000
b]ee	chr1:29506014-29506307(-)$1	293	219	223	12.0000
FFFF	chr11:65268033-65268238(+)$1	205	2	6	12.0000
d!!g	chr11:65267720-65267927(+)$1	207	23	27	12.0000
2ccc	chr21:47950841-47951162(+)$1	321	69	73	12.0000
azzz	chr7:129101925-129102239(+)$1	314	52	56	12.0000
gg!!	chr17:20787728-20787984(+)$1	256	220	224	12.0000
ffbb	chr22:23607238-23607521(+)$1	283	95	99	12.0000
LBB:	chr7:65366559-65366855(+)$1	296	81	85	12.0000
===n	chr7:119537360-119537646(-)$1	286	85	89	12.0000
nddd	chr11:5423936-5424208(-)$1	272	116	120	12.0000
"bb!	chr1:22008543-22008862(-)$1	319	70	74	12.0000
::::	chr5:6723870-6724140(+)$1	270	32	36	12.0000
b[cc	chr3:195419964-195420239(+)$1	275	46	50	12.0000
dfff	chr11:65267943-65268159(+)$1	216	5	9	12.0000
:ddd	chr16:20687414-20687675(+)$1	261	38	42	12.0000
DDDc	chr14:102268121-102268375(+)$1	254	128	132	12.0000
d!!g	chr11:65267709-65267920(+)$1	211	34	38	12.0000
oocc	chr21:39470757-39471033(-)$1	276	176	180	12.0000
::::	chr11:65267585-65267801(+)$1	216	57	61	12.0000
tccc	chr11:5489486-5489786(-)$1	300	21	25	12.0000
::::	chr17:20772722-20772965(+)$1	243	78	82	12.0000
:EEE	chr22:48162717-48163010(+)$1	293	224	228	12.0000
2ddd	chr22:48185232-48185532(+)$1	300	273	277	12.0000
qqqq	chr6:4032031-4032329(+)$1	298	97	101	12.0000
:DDD	chr9:126028580-126028841(-)$1	261	34	38	12.0000
::::	chr16:88584155-88584469(+)$1	314	110	114	12.0000
DDDD	chr11:65268008-65268218(+)$1	210	19	23	12.0000
d!!g	chr11:65267697-65267902(+)$1	205	46	50	12.0000
!bbr	chr1:29505859-29506145(-)$1	286	57	61	12.0000
ggdd	chr1:203767153-203767404(+)$1	251	83	87	12.0000
eee%	chr1:231173421-231173697(-)$1	276	193	197	12.0000
d:::	chr7:119491470-119491772(-)$1	302	169	173	12.0000
::DD	chr7:153097827-153098088(-)$1	261	32	36	12.0000
oa]e	chr1:29504170-29504443(-)$1	273	49	53	12.0000
gggg	chr1:213176109-213176350(-)$1	241	96	100	12.0000
::::	chr11:65267526-65267735(+)$1	209	116	120	12.0000
::::	chr11:65267542-65267756(+)$1	214	100	104	12.0000
ddd:	chr7:119346584-119346837(-)$1	253	60	64	12.0000
oooo	chr1:91984569-91984859(+)$1	290	188	192	12.0000
gggg	chr2:97559811-97560058(-)$1	247	105	109	12.0000
d!!g	chr11:65267702-65267909(+)$1	207	41	45	12.0000
{EEE	chr1:241797240-241797475(-)$1	235	25	29	12.0000
bbmm	chr11:65268162-65268376(+)$1	214	17	21	12.0000
gggg	chr9:133482986-133483276(+)$1	290	19	23	12.0000
d!!g	chr11:65267727-65267936(+)$1	209	16	20	12.0000
::::	chr11:65267566-65267773(+)$1	207	76	80	12.0000
DDDD	chr11:65268006-65268208(+)$1	202	21	25	12.0000
ba]d	chr2:168767336-168767626(-)$1	290	40	44	12.0000
nnnn	chr17:68105720-68106031(-)$1	311	35	39	12.0000
33dd	chr7:158567999-158568263(-)$1	264	115	119	12.0000

#DB
((((	chr9:136148942-136149228(-)$1	1	58	62	12.0000
.((.	chr11:65267744-65267948(+)$1	1	95	99	12.0000
((((	chr21:38839475-38839707(+)$1	1	85	89	12.0000
....	chr7:158570157-158570423(-)$1	1	78	82	12.0000
...(	chr3:152057867-152058133(+)$1	1	5	9	12.0000
((..	chr1:61097520-61097843(-)$1	1	5	9	12.0000
.((.	chr1:145661523-145661773(+)$1	1	14	18	12.0000
.)))	chr3:42679728-42679994(+)$1	1	96	100	12.0000
....	chr17:79544201-79544455(-)$1	1	52	56	12.0000
((((	chr11:5443360-5443645(-)$1	1	72	76	12.0000
((((	chr11:5479960-5480209(-)$1	1	60	64	12.0000
....	chr11:65267573-65267779(+)$1	1	69	73	12.0000
(...	chr1:155451016-155451285(-)$1	1	115	119	12.0000
))))	chr19:34876277-34876514(+)$1	1	48	52	12.0000
..((	chr17:20787401-20787648(+)$1	1	35	39	12.0000
(...	chr11:65268137-65268340(+)$1	1	16	20	12.0000
...(	chr18:2736181-2736475(+)$1	1	75	79	12.0000
))))	chr7:119539839-119540165(-)$1	1	284	288	12.0000
(...	chr19:28935253-28935516(-)$1	1	78	82	12.0000
..))	chr3:42679138-42679394(+)$1	1	134	138	12.0000
(((.	chr11:65268081-65268291(+)$1	1	1	5	12.0000
((((	chr2:145247234-145247489(-)$1	1	13	17	12.0000
))..	chr20:33615128-33615437(-)$1	1	74	78	12.0000
((((	chr19:29105920-29106161(+)$1	1	134	138	12.0000
))))	chr1:40882815-40883030(+)$1	1	136	140	12.0000
))))	chr7:158568905-158569234(-)$1	1	204	208	12.0000
(.((	chr11:65268100-65268307(+)$1	1	53	57	12.0000
..))	chr1:219371137-219371404(+)$1	1	90	94	12.0000
))..	chr11:65267495-65267698(+)$1	1	147	151	12.0000
((((	chr12:133393450-133393791(-)$1	1	44	48	12.0000
.)).	chr3:160150795-160151038(+)$1	1	66	70	12.0000
(...	chr11:65268118-65268329(+)$1	1	35	39	12.0000
(...	chr22:50018568-50018896(-)$1	1	50	54	12.0000
...)	chr7:119436991-119437300(-)$1	1	138	142	12.0000
).))	chr1:29506014-29506307(-)$1	1	219	223	12.0000
((((	chr11:65268033-65268238(+)$1	1	2	6	12.0000
(..(	chr11:65267720-65267927(+)$1	1	23	27	12.0000
.)))	chr21:47950841-47951162(+)$1	1	69	73	12.0000
(...	chr7:129101925-129102239(+)$1	1	52	56	12.0000
((..	chr17:20787728-20787984(+)$1	1	220	224	12.0000
))))	chr22:23607238-23607521(+)$1	1	95	99	12.0000
.((.	chr7:65366559-65366855(+)$1	1	81	85	12.0000
(((.	chr7:119537360-119537646(-)$1	1	85	89	12.0000
.)))	chr11:5423936-5424208(-)$1	1	116	120	12.0000
.((.	chr1:22008543-22008862(-)$1	1	70	74	12.0000
....	chr5:6723870-6724140(+)$1	1	32	36	12.0000
(.((	chr3:195419964-195420239(+)$1	1	46	50	12.0000
((((	chr11:65267943-65268159(+)$1	1	5	9	12.0000
.(((	chr16:20687414-20687675(+)$1	1	38	42	12.0000
((((	chr14:102268121-102268375(+)$1	1	128	132	12.0000
(..(	chr11:65267709-65267920(+)$1	1	34	38	12.0000
..))	chr21:39470757-39471033(-)$1	1	176	180	12.0000
....	chr11:65267585-65267801(+)$1	1	57	61	12.0000
.)))	chr11:5489486-5489786(-)$1	1	21	25	12.0000
....	chr17:20772722-20772965(+)$1	1	78	82	12.0000
.)))	chr22:48162717-48163010(+)$1	1	224	228	12.0000
.)))	chr22:48185232-48185532(+)$1	1	273	277	12.0000
....	chr6:4032031-4032329(+)$1	1	97	101	12.0000
.(((	chr9:126028580-126028841(-)$1	1	34	38	12.0000
....	chr16:88584155-88584469(+)$1	1	110	114	12.0000
((((	chr11:65268008-65268218(+)$1	1	19	23	12.0000
(..(	chr11:65267697-65267902(+)$1	1	46	50	12.0000
.((.	chr1:29505859-29506145(-)$1	1	57	61	12.0000
))((	chr1:203767153-203767404(+)$1	1	83	87	12.0000
(((.	chr1:231173421-231173697(-)$1	1	193	197	12.0000
)...	chr7:119491470-119491772(-)$1	1	169	173	12.0000
..((	chr7:153097827-153098088(-)$1	1	32	36	12.0000
.).)	chr1:29504170-29504443(-)$1	1	49	53	12.0000
))))	chr1:213176109-213176350(-)$1	1	96	100	12.0000
....	chr11:65267526-65267735(+)$1	1	116	120	12.0000
....	chr11:65267542-65267756(+)$1	1	100	104	12.0000
))).	chr7:119346584-119346837(-)$1	1	60	64	12.0000
....	chr1:91984569-91984859(+)$1	1	188	192	12.0000
))))	chr2:97559811-97560058(-)$1	1	105	109	12.0000
(..(	chr11:65267702-65267909(+)$1	1	41	45	12.0000
.(((	chr1:241797240-241797475(-)$1	1	25	29	12.0000
((..	chr11:65268162-65268376(+)$1	1	17	21	12.0000
))))	chr9:133482986-133483276(+)$1	1	19	23	12.0000
(..(	chr11:65267727-65267936(+)$1	1	16	20	12.0000
....	chr11:65267566-65267773(+)$1	1	76	80	12.0000
((((	chr11:65268006-65268208(+)$1	1	21	25	12.0000
)).)	chr2:168767336-168767626(-)$1	1	40	44	12.0000
....	chr17:68105720-68106031(-)$1	1	35	39	12.0000
..))	chr7:158567999-158568263(-)$1	1	115	119	12.0000

#PSSM
A : 0.63	a : 0.36	
G : 0.63	g : 0.36	
G : 0.63	g : 0.36	
A : 0.63	a : 0.36	

#score	1008.0
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_transcript_m1_run2.nuc.txt

#NT
GUGGGGCC	chr16:88961914-88962156(-)$1	242	208	216	16.0833
GUGGGGGC	chr21:46858729-46858995(+)$1	266	105	113	15.9444
guGGGGUU	chr2:132038632-132038879(+)$1	247	28	36	17.4722
GUGGGGCC	chr1:27023013-27023278(+)$1	265	67	75	16.0833
GUGGGGUG	chr5:43290991-43291285(-)$1	294	81	89	17.4722
GUGGGGCG	chr22:50030421-50030683(-)$1	262	208	216	16.6388
GUGGGGUU	chrM:14362-14583(-)$1	221	188	196	17.4722
GUGGGGCC	chr19:47731815-47732055(-)$1	240	218	226	16.0833
GUGGGGGG	chr16:88561029-88561296(+)$1	267	58	66	16.5000
GUGGGGGG	chr17:62501975-62502235(-)$1	260	76	84	16.5000
GUGGGGGG	chr7:5569890-5570159(-)$1	269	133	141	16.5000
GUGGGGUU	chrM:14222-14444(-)$1	222	49	57	17.4722
gugggggu	chr7:932413-932656(+)$1	243	125	133	16.5000
GUGGGGCA	chr11:65190357-65190612(+)$1	255	85	93	15.5277
GUGGGGUG	chr6:31698293-31698552(-)$1	259	123	131	17.4722
GUGGGGUC	chr3:128213141-128213394(+)$1	253	222	230	16.9166
GUGGGGCA	chr21:46835013-46835265(+)$1	252	112	120	15.5277
GUGGGGAG	chr16:88959377-88959637(-)$1	260	1	9	15.9444
GUGGGGCU	chr19:34885263-34885514(+)$1	251	161	169	16.6388
GUGGGGGU	chr22:20110940-20111187(+)$1	247	70	78	16.5000
guguggug	chr1:246335320-246335600(-)$1	280	55	63	13.0277
GUGGGGGC	chr16:89042792-89043037(-)$1	245	1	9	15.9444
gugggggu	chr9:96433093-96433355(+)$1	262	225	233	16.5000
GUGGGGUA	chr20:1165115-1165373(-)$1	258	9	17	16.3611
GUGGGGCU	chr3:128210071-128210334(+)$1	263	114	122	16.6388
GUGGGGAG	chr19:4036951-4037192(+)$1	241	108	116	15.9444
GUGGGGUC	chr19:1418385-1418617(+)$1	232	92	100	16.9166
GUGGGGUU	chrM:14203-14422(-)$1	219	27	35	17.4722
GUGGGGAG	chr19:4037135-4037353(+)$1	218	137	145	15.9444
GUGGGGUU	chrM:14252-14494(-)$1	242	99	107	17.4722
GUGGGGAA	chr22:19108868-19109172(-)$1	304	169	177	14.8333
GUGGGGUU	chrM:14177-14400(-)$1	223	5	13	17.4722
guguggug	chr19:34879665-34879907(+)$1	242	61	69	13.0277
gUGGGGUC	chr13:92000345-92000636(+)$1	291	258	266	16.9166
GUGGGGCG	chr2:97535309-97535554(-)$1	245	134	142	16.6388

#otherMatches

#Struct PSSM
BB}CCC}B	chr16:89022607-89022854(-)$1	247	153	161	17.4722
A}CCCddd	chr16:88961914-88962156(-)$1	242	208	216	16.0833
2dddd]ff	chr21:46858729-46858995(+)$1	266	105	113	15.9444
KKGGGGGG	chr2:132038632-132038879(+)$1	247	28	36	17.4722
bb[bb[gg	chr1:27023013-27023278(+)$1	265	67	75	16.0833
b]a:CCCY	chr5:43290991-43291285(-)$1	294	81	89	17.4722
ddd]dddd	chr22:50030421-50030683(-)$1	262	208	216	16.6388
i]bb333d	chrM:14362-14583(-)$1	221	188	196	17.4722
ZFFFFFFY	chr19:47731815-47732055(-)$1	240	218	226	16.0833
eeee[ddd	chr16:88561029-88561296(+)$1	267	58	66	16.5000
]a]bbddd	chr17:62501975-62502235(-)$1	260	76	84	16.5000
dddd]ddd	chr7:5569890-5570159(-)$1	269	133	141	16.5000
ff####a!	chrM:14222-14444(-)$1	222	49	57	17.4722
eee:::::	chr7:932413-932656(+)$1	243	125	133	16.5000
eeeee$$$	chr11:65190357-65190612(+)$1	255	85	93	15.5277
[bb"""gg	chr6:31698293-31698552(-)$1	259	123	131	17.4722
[ccc[bbm	chr3:128213141-128213394(+)$1	253	222	230	16.9166
!!eeeeen	chr21:46835013-46835265(+)$1	252	112	120	15.5277
::::::DD	chr16:88959377-88959637(-)$1	260	1	9	15.9444
dddfffff	chr19:34885263-34885514(+)$1	251	161	169	16.6388
mmma]ddd	chr22:20110940-20111187(+)$1	247	70	78	16.5000
:eeeee!!	chr1:246335320-246335600(-)$1	280	55	63	13.0277
CCKKFFFF	chr16:89042792-89043037(-)$1	245	1	9	15.9444
}BBZZZCC	chr9:96433093-96433355(+)$1	262	225	233	16.5000
ddssssss	chr20:1165115-1165373(-)$1	258	9	17	16.3611
JJJJJJJJ	chr3:128210071-128210334(+)$1	263	114	122	16.6388
J:ddddmm	chr19:4036951-4037192(+)$1	241	108	116	15.9444
ggggggg]	chr19:1418385-1418617(+)$1	232	92	100	16.9166
ff####a!	chrM:14203-14422(-)$1	219	27	35	17.4722
qbbfffff	chr19:4037135-4037353(+)$1	218	137	145	15.9444
ff####a!	chrM:14252-14494(-)$1	242	99	107	17.4722
c]eeeee4	chr22:19108868-19109172(-)$1	304	169	177	14.8333
:ggggggg	chrM:14177-14400(-)$1	223	5	13	17.4722
nnbb333e	chr19:34879665-34879907(+)$1	242	61	69	13.0277
DD}CCC:c	chr13:92000345-92000636(+)$1	291	258	266	16.9166
gggggggc	chr2:97535309-97535554(-)$1	245	134	142	16.6388

#DB
)).))).)	chr16:89022607-89022854(-)$1	1	153	161	17.4722
).)))(((	chr16:88961914-88962156(-)$1	1	208	216	16.0833
.)))).))	chr21:46858729-46858995(+)$1	1	105	113	15.9444
..((((((	chr2:132038632-132038879(+)$1	1	28	36	17.4722
((.((.((	chr1:27023013-27023278(+)$1	1	67	75	16.0833
).).))).	chr5:43290991-43291285(-)$1	1	81	89	17.4722
))).))))	chr22:50030421-50030683(-)$1	1	208	216	16.6388
).))...)	chrM:14362-14583(-)$1	1	188	196	17.4722
.)))))).	chr19:47731815-47732055(-)$1	1	218	226	16.0833
((((.(((	chr16:88561029-88561296(+)$1	1	58	66	16.5000
.).))(((	chr17:62501975-62502235(-)$1	1	76	84	16.5000
)))).)))	chr7:5569890-5570159(-)$1	1	133	141	16.5000
((....(.	chrM:14222-14444(-)$1	1	49	57	17.4722
))).....	chr7:932413-932656(+)$1	1	125	133	16.5000
(((((...	chr11:65190357-65190612(+)$1	1	85	93	15.5277
.((...((	chr6:31698293-31698552(-)$1	1	123	131	17.4722
.(((.((.	chr3:128213141-128213394(+)$1	1	222	230	16.9166
..(((((.	chr21:46835013-46835265(+)$1	1	112	120	15.5277
......((	chr16:88959377-88959637(-)$1	1	1	9	15.9444
((((((((	chr19:34885263-34885514(+)$1	1	161	169	16.6388
...).)))	chr22:20110940-20111187(+)$1	1	70	78	16.5000
.(((((..	chr1:246335320-246335600(-)$1	1	55	63	13.0277
((..((((	chr16:89042792-89043037(-)$1	1	1	9	15.9444
.))...))	chr9:96433093-96433355(+)$1	1	225	233	16.5000
((......	chr20:1165115-1165373(-)$1	1	9	17	16.3611
((((((((	chr3:128210071-128210334(+)$1	1	114	122	16.6388
(.((((..	chr19:4036951-4037192(+)$1	1	108	116	15.9444
))))))).	chr19:1418385-1418617(+)$1	1	92	100	16.9166
((....(.	chrM:14203-14422(-)$1	1	27	35	17.4722
.)))))))	chr19:4037135-4037353(+)$1	1	137	145	15.9444
((....(.	chrM:14252-14494(-)$1	1	99	107	17.4722
).))))).	chr22:19108868-19109172(-)$1	1	169	177	14.8333
.(((((((	chrM:14177-14400(-)$1	1	5	13	17.4722
..))...)	chr19:34879665-34879907(+)$1	1	61	69	13.0277
)).))).(	chr13:92000345-92000636(+)$1	1	258	266	16.9166
((((((((	chr2:97535309-97535554(-)$1	1	134	142	16.6388

#PSSM
G : 0.83	g : 0.16	
U : 0.86	u : 0.13	
G : 0.88	g : 0.11	
G : 0.88	g : 0.05	u : 0.05	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
U : 0.36	C : 0.25	G : 0.16	A : 0.11	g : 0.05	u : 0.05	
U : 0.27	G : 0.27	C : 0.22	A : 0.11	u : 0.05	g : 0.05	

#score	589.8333333333337
#seq	36
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_transcript_m3_run1.nuc.txt

#NT
UCUGCUG	chr19:900166-900447(-)$1	281	136	143	13.6666
CCUGCUG	chr9:139565648-139565956(+)$1	308	11	18	17.5000
CCUGCUG	chr19:991805-992107(+)$1	302	171	178	17.5000
CAUGCUG	chr9:95033472-95033730(-)$1	258	95	102	13.5000
CCUGCUG	chr1:206878656-206878911(+)$1	255	112	119	17.5000
CCUGCUG	chrX:152936690-152936952(-)$1	262	254	261	17.5000
CCUGCUG	chr3:127388096-127388561(+)$1	465	436	443	17.5000
CCUGCCG	chr16:844432-844690(+)$1	258	58	65	13.4166
CCUGCUG	chr22:50695502-50695867(-)$1	365	175	182	17.5000
ccagcug	chr16:85677944-85678197(+)$1	253	80	87	12.9166
CAUGCUG	chr16:72138081-72138364(+)$1	283	101	108	13.5000
GCUGCUG	chr16:23505779-23506050(-)$1	271	46	53	13.8333
ccugcug	chr16:88957401-88957673(-)$1	272	260	267	17.5000
UCUGCUG	chr19:28918581-28918839(-)$1	258	68	75	13.6666
CCUGAUG	chr20:60622877-60623141(-)$1	264	115	122	13.2500
CCUGCUG	chr10:135272805-135273120(+)$1	315	118	125	17.5000
CCUGCUG	chr12:133241298-133241571(-)$1	273	257	264	17.5000
CCUGCUG	chrX:70765983-70766233(+)$1	250	17	24	17.5000
CCUGCAG	chr10:3166786-3167169(+)$1	383	101	108	13.2500
CUUGCUG	chr19:39908296-39908600(+)$1	304	58	65	13.1666
GCUGCUG	chr18:76904938-76905197(+)$1	259	46	53	13.8333
CCUGUUG	chr19:10226830-10227081(-)$1	251	25	32	13.5833
CCUGCGG	chr20:62330511-62330757(-)$1	246	32	39	13.1666
CCUGCUC	chr12:133356651-133356911(-)$1	260	2	9	13.0000
CCUGUUG	chr19:2195564-2195866(+)$1	302	292	299	13.5833
CCUUCUG	chr12:133295294-133295553(+)$1	259	22	29	12.9166
ccugcug	chr9:127888468-127888739(-)$1	271	245	252	17.5000
ccuguug	chr11:65878684-65879017(+)$1	333	73	80	13.5833
gcugcug	chr17:80810634-80810875(+)$1	241	47	54	13.8333
CCUGCUG	chr2:240287507-240287752(-)$1	245	82	89	17.5000
CCUGCUG	chr7:1478210-1478468(-)$1	258	61	68	17.5000
CAUGCUG	chr9:127470985-127471255(-)$1	270	110	117	13.5000
CCUGGUG	chr3:47462671-47462981(-)$1	310	274	281	13.3333
UCUGCUG	chr12:132394804-132395126(+)$1	322	194	201	13.6666
CAUGCUG	chr3:184034663-184035016(+)$1	353	79	86	13.5000
CCUGCUC	chr3:50223416-50223827(+)$1	411	32	39	13.0000
CAUGCUG	chr10:103589747-103589981(-)$1	234	95	102	13.5000
ACUGCUG	chr6:35447398-35447698(-)$1	300	104	111	13.6666
ACUGCUG	chr12:125270542-125270852(-)$1	310	98	105	13.6666
acugcug	chr7:105016145-105016404(-)$1	259	12	19	13.6666
CCUGUUG	chr22:20068918-20069154(+)$1	236	15	22	13.5833
CCUGCUC	chr7:100174280-100174518(-)$1	238	126	133	13.0000
GCUGCUG	chr12:133241552-133241858(-)$1	306	46	53	13.8333
CCUGCUG	chr22:20876885-20877167(+)$1	282	145	152	17.5000
CCUGCCG	chr19:3643482-3643721(-)$1	239	196	203	13.4166
CCUCCUG	chr4:1804117-1804363(+)$1	246	64	71	12.8333
GCUGCUG	chrX:11316818-11317100(-)$1	282	201	208	13.8333
CCUGCUG	chr7:99949372-99949681(+)$1	309	247	254	17.5000
CCUGGUG	chr16:30679274-30679632(+)$1	358	46	53	13.3333
CCCGCUG	chr7:100174624-100174850(-)$1	226	19	26	12.8333
CCUGCCG	chr3:52516697-52516965(+)$1	268	56	63	13.4166
CCUGCUG	chr13:19538746-19539044(-)$1	298	260	267	17.5000
CGUGCUG	chr2:236424790-236425059(+)$1	269	15	22	13.1666
CCUGCUG	chr9:135980966-135981244(-)$1	278	238	245	17.5000
CCUGUUG	chr14:105625849-105626179(-)$1	330	177	184	13.5833
CCUUCUG	chr14:105481310-105481633(-)$1	323	261	268	12.9166
ccugcag	chr15:58989586-58989866(-)$1	280	98	105	13.2500
CCUGCCG	chr7:12433035-12433268(-)$1	233	19	26	13.4166
CCUGCUG	chr2:242438958-242439293(-)$1	335	25	32	17.5000

#otherMatches

#Struct PSSM
ddd]bb:	chr20:60891375-60891656(-)$1	281	74	81	12.9166
ffffff[	chr19:900166-900447(-)$1	281	136	143	13.6666
CCC{BB{	chr9:139565648-139565956(+)$1	308	11	18	17.5000
::ggggg	chr19:991805-992107(+)$1	302	171	178	17.5000
c))))))	chr9:95033472-95033730(-)$1	258	95	102	13.5000
ddmmmmd	chr1:206878656-206878911(+)$1	255	112	119	17.5000
CC}DDDD	chrX:152936690-152936952(-)$1	262	254	261	17.5000
cccclll	chr3:127388096-127388561(+)$1	465	436	443	17.5000
ff[eeee	chr16:844432-844690(+)$1	258	58	65	13.4166
nnnnfff	chr22:50695502-50695867(-)$1	365	175	182	17.5000
ee[ccc$	chr16:85677944-85678197(+)$1	253	80	87	12.9166
EEMMMMH	chr16:72138081-72138364(+)$1	283	101	108	13.5000
e22gggg	chr16:23505779-23506050(-)$1	271	46	53	13.8333
ddd]ccc	chr16:88957401-88957673(-)$1	272	260	267	17.5000
llldddd	chr19:28918581-28918839(-)$1	258	68	75	13.6666
eeennnn	chr20:60622877-60623141(-)$1	264	115	122	13.2500
dddmmmm	chr10:135272805-135273120(+)$1	315	118	125	17.5000
JJJJJJJ	chr12:133241298-133241571(-)$1	273	257	264	17.5000
qqeeeee	chrX:70765983-70766233(+)$1	250	17	24	17.5000
HHHHHHH	chr10:3166786-3167169(+)$1	383	101	108	13.2500
hh22eee	chr19:39908296-39908600(+)$1	304	58	65	13.1666
!bb[fff	chr18:76904938-76905197(+)$1	259	46	53	13.8333
uuuuuuu	chr19:10226830-10227081(-)$1	251	25	32	13.5833
iiiiimm	chr20:62330511-62330757(-)$1	246	32	39	13.1666
EEEGGGG	chr12:133356651-133356911(-)$1	260	2	9	13.0000
CC~~~~C	chr19:2195564-2195866(+)$1	302	292	299	13.5833
DDMMMMB	chr12:133295294-133295553(+)$1	259	22	29	12.9166
c]iiiii	chr9:127888468-127888739(-)$1	271	245	252	17.5000
555eeee	chr11:65878684-65879017(+)$1	333	73	80	13.5833
ggggg$$	chr17:80810634-80810875(+)$1	241	47	54	13.8333
:::hhhh	chr2:240287507-240287752(-)$1	245	82	89	17.5000
ddd]bb:	chr7:1478210-1478468(-)$1	258	61	68	17.5000
c]bb]a]	chr9:127470985-127471255(-)$1	270	110	117	13.5000
DD}HHHH	chr3:47462671-47462981(-)$1	310	274	281	13.3333
bhhhhhh	chr12:132394804-132395126(+)$1	322	194	201	13.6666
fffff:D	chr3:184034663-184035016(+)$1	353	79	86	13.5000
D{GGGGG	chr3:50223416-50223827(+)$1	411	32	39	13.0000
d22ccc]	chr10:103589747-103589981(-)$1	234	95	102	13.5000
DDDDA::	chr6:35447398-35447698(-)$1	300	104	111	13.6666
ggggggg	chr12:125270542-125270852(-)$1	310	98	105	13.6666
###bbll	chr7:105016145-105016404(-)$1	259	12	19	13.6666
mmfffff	chr22:20068918-20069154(+)$1	236	15	22	13.5833
333ffff	chr7:100174280-100174518(-)$1	238	126	133	13.0000
hhhhhh]	chr12:133241552-133241858(-)$1	306	46	53	13.8333
ggggggb	chr22:20876885-20877167(+)$1	282	145	152	17.5000
III}FFF	chr19:3643482-3643721(-)$1	239	196	203	13.4166
IIIII{B	chr4:1804117-1804363(+)$1	246	64	71	12.8333
GGGGGGB	chrX:11316818-11317100(-)$1	282	201	208	13.8333
ggg:GGG	chr7:99949372-99949681(+)$1	309	247	254	17.5000
LGGGGGG	chr16:30679274-30679632(+)$1	358	46	53	13.3333
eee:ggg	chr7:100174624-100174850(-)$1	226	19	26	12.8333
CCCgggg	chr3:52516697-52516965(+)$1	268	56	63	13.4166
IIIIIII	chr13:19538746-19539044(-)$1	298	260	267	17.5000
ggggggz	chr2:236424790-236425059(+)$1	269	15	22	13.1666
fffffll	chr9:135980966-135981244(-)$1	278	238	245	17.5000
ddd]bb]	chr14:105625849-105626179(-)$1	330	177	184	13.5833
d:DDDD}	chr14:105481310-105481633(-)$1	323	261	268	12.9166
aaddddn	chr15:58989586-58989866(-)$1	280	98	105	13.2500
##dddd!	chr7:12433035-12433268(-)$1	233	19	26	13.4166
gg[ccc#	chr2:242438958-242439293(-)$1	335	25	32	17.5000

#DB
))).)).	chr20:60891375-60891656(-)$1	1	74	81	12.9166
((((((.	chr19:900166-900447(-)$1	1	136	143	13.6666
(((.((.	chr9:139565648-139565956(+)$1	1	11	18	17.5000
..(((((	chr19:991805-992107(+)$1	1	171	178	17.5000
(......	chr9:95033472-95033730(-)$1	1	95	102	13.5000
((....)	chr1:206878656-206878911(+)$1	1	112	119	17.5000
)).))))	chrX:152936690-152936952(-)$1	1	254	261	17.5000
((((...	chr3:127388096-127388561(+)$1	1	436	443	17.5000
((.((((	chr16:844432-844690(+)$1	1	58	65	13.4166
....)))	chr22:50695502-50695867(-)$1	1	175	182	17.5000
((.(((.	chr16:85677944-85678197(+)$1	1	80	87	12.9166
((....(	chr16:72138081-72138364(+)$1	1	101	108	13.5000
)..))))	chr16:23505779-23506050(-)$1	1	46	53	13.8333
))).)))	chr16:88957401-88957673(-)$1	1	260	267	17.5000
...))))	chr19:28918581-28918839(-)$1	1	68	75	13.6666
(((....	chr20:60622877-60623141(-)$1	1	115	122	13.2500
(((....	chr10:135272805-135273120(+)$1	1	118	125	17.5000
)))))))	chr12:133241298-133241571(-)$1	1	257	264	17.5000
..)))))	chrX:70765983-70766233(+)$1	1	17	24	17.5000
(((((((	chr10:3166786-3167169(+)$1	1	101	108	13.2500
))..)))	chr19:39908296-39908600(+)$1	1	58	65	13.1666
.((.(((	chr18:76904938-76905197(+)$1	1	46	53	13.8333
.......	chr19:10226830-10227081(-)$1	1	25	32	13.5833
(((((..	chr20:62330511-62330757(-)$1	1	32	39	13.1666
(((((((	chr12:133356651-133356911(-)$1	1	2	9	13.0000
))....)	chr19:2195564-2195866(+)$1	1	292	299	13.5833
((....(	chr12:133295294-133295553(+)$1	1	22	29	12.9166
).)))))	chr9:127888468-127888739(-)$1	1	245	252	17.5000
...))))	chr11:65878684-65879017(+)$1	1	73	80	13.5833
(((((..	chr17:80810634-80810875(+)$1	1	47	54	13.8333
...((((	chr2:240287507-240287752(-)$1	1	82	89	17.5000
))).)).	chr7:1478210-1478468(-)$1	1	61	68	17.5000
).)).).	chr9:127470985-127471255(-)$1	1	110	117	13.5000
)).))))	chr3:47462671-47462981(-)$1	1	274	281	13.3333
)((((((	chr12:132394804-132395126(+)$1	1	194	201	13.6666
))))).(	chr3:184034663-184035016(+)$1	1	79	86	13.5000
(.(((((	chr3:50223416-50223827(+)$1	1	32	39	13.0000
)..))).	chr10:103589747-103589981(-)$1	1	95	102	13.5000
)))))..	chr6:35447398-35447698(-)$1	1	104	111	13.6666
)))))))	chr12:125270542-125270852(-)$1	1	98	105	13.6666
...((..	chr7:105016145-105016404(-)$1	1	12	19	13.6666
..)))))	chr22:20068918-20069154(+)$1	1	15	22	13.5833
...))))	chr7:100174280-100174518(-)$1	1	126	133	13.0000
)))))).	chr12:133241552-133241858(-)$1	1	46	53	13.8333
(((((((	chr22:20876885-20877167(+)$1	1	145	152	17.5000
))).)))	chr19:3643482-3643721(-)$1	1	196	203	13.4166
(((((.(	chr4:1804117-1804363(+)$1	1	64	71	12.8333
)))))))	chrX:11316818-11317100(-)$1	1	201	208	13.8333
))).)))	chr7:99949372-99949681(+)$1	1	247	254	17.5000
.((((((	chr16:30679274-30679632(+)$1	1	46	53	13.3333
))).(((	chr7:100174624-100174850(-)$1	1	19	26	12.8333
(((((((	chr3:52516697-52516965(+)$1	1	56	63	13.4166
)))))))	chr13:19538746-19539044(-)$1	1	260	267	17.5000
((((((.	chr2:236424790-236425059(+)$1	1	15	22	13.1666
(((((..	chr9:135980966-135981244(-)$1	1	238	245	17.5000
))).)).	chr14:105625849-105626179(-)$1	1	177	184	13.5833
).)))).	chr14:105481310-105481633(-)$1	1	261	268	12.9166
((((((.	chr15:58989586-58989866(-)$1	1	98	105	13.2500
..((((.	chr7:12433035-12433268(-)$1	1	19	26	13.4166
((.(((.	chr2:242438958-242439293(-)$1	1	25	32	17.5000

#PSSM
C : 0.73	c : 0.08	G : 0.06	U : 0.05	A : 0.03	g : 0.01	a : 0.01	
C : 0.76	c : 0.11	A : 0.08	U : 0.01	G : 0.01	
U : 0.85	u : 0.09	A : 0.01	a : 0.01	C : 0.01	
G : 0.83	g : 0.11	U : 0.03	C : 0.01	
C : 0.76	c : 0.09	U : 0.06	G : 0.03	A : 0.01	u : 0.01	
U : 0.78	u : 0.09	C : 0.06	A : 0.01	G : 0.01	a : 0.01	
G : 0.83	g : 0.11	C : 0.05	

#score	877.5000000000005
#seq	60
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_CDS_m1_run1.nuc.txt

#NT
UGAAA	chr3:47161680-47161972(-)$1	292	91	96	15.0000
UGAAA	chr11:62292795-62293047(-)$1	252	73	78	15.0000
UGAAA	chr1:39800999-39801251(+)$1	252	113	118	15.0000
UGAAA	chr1:39799371-39799627(+)$1	256	129	134	15.0000
UGAAA	chr11:62300333-62300597(-)$1	264	9	14	15.0000
UGAAA	chr11:62293957-62294202(-)$1	245	76	81	15.0000
UGAAA	chr3:37365626-37365911(+)$1	285	65	70	15.0000
UGAAA	chr2:55253888-55254152(-)$1	264	27	32	15.0000
UGAAA	chr3:37366895-37367145(+)$1	250	14	19	15.0000
UGAAA	chr12:46320559-46320862(-)$1	303	71	76	15.0000
UGAAA	chr11:62293173-62293427(-)$1	254	129	134	15.0000
UGAAA	chr2:232325097-232325355(-)$1	258	238	243	15.0000
UGAAA	chr4:104079676-104079954(-)$1	278	208	213	15.0000
UGAAA	chr11:62294333-62294601(-)$1	268	19	24	15.0000
UGAAA	chr11:62296875-62297097(-)$1	222	41	46	15.0000
UGAAA	chr3:37365721-37366022(+)$1	301	265	270	15.0000
UGAAA	chr11:62288128-62288380(-)$1	252	74	79	15.0000
UGAAA	chr11:62300165-62300411(-)$1	246	63	68	15.0000
UGAAA	chr2:55253828-55254060(-)$1	232	12	17	15.0000
UGAAA	chr11:62300887-62301156(-)$1	269	193	198	15.0000
UGAAA	chr1:39797400-39797686(+)$1	286	78	83	15.0000
UGAAA	chr11:62286369-62286605(-)$1	236	192	197	15.0000
UGAAA	chr1:214815607-214815878(+)$1	271	9	14	15.0000
UGAAA	chr3:37366209-37366475(+)$1	266	2	7	15.0000
UGAAA	chr11:62291909-62292150(-)$1	241	4	9	15.0000
UGAAA	chr11:62285839-62286158(-)$1	319	6	11	15.0000
UGAAA	chr1:214815082-214815314(+)$1	232	131	136	15.0000
UGAAA	chr3:37368134-37368410(+)$1	276	12	17	15.0000
UGAAA	chrM:14220-14444(-)$1	224	86	91	15.0000
UGAAA	chr3:47163100-47163358(-)$1	258	145	150	15.0000
UGAAA	chr11:62285119-62285382(-)$1	263	25	30	15.0000
UGAAA	chr3:47165799-47166032(-)$1	233	2	7	15.0000
UGAAA	chr11:62284728-62285015(-)$1	287	9	14	15.0000
UGAAA	chr9:100700249-100700509(-)$1	260	174	179	15.0000
UGAAA	chr18:9256705-9256989(+)$1	284	141	146	15.0000
UGAAA	chr18:9257991-9258247(+)$1	256	166	171	15.0000
UGAAA	chr3:37365549-37365808(+)$1	259	142	147	15.0000
UGAAA	chr15:40915379-40915642(+)$1	263	91	96	15.0000
UGAAA	chr3:160134046-160134300(+)$1	254	39	44	15.0000
UGAAA	chr7:72891847-72892162(-)$1	315	11	16	15.0000
UGAAA	chr15:40913964-40914222(+)$1	258	204	209	15.0000
UGAAA	chr11:62285644-62285890(-)$1	246	35	40	15.0000
UGAAA	chr11:62291322-62291604(-)$1	282	130	135	15.0000
UGAAA	chr11:62292063-62292331(-)$1	268	140	145	15.0000
UGAAA	chr11:62295475-62295705(-)$1	230	193	198	15.0000
UGAAA	chr2:55253544-55253784(-)$1	240	28	33	15.0000
UGAAA	chr11:62286572-62286828(-)$1	256	86	91	15.0000
UGAAA	chr18:9256905-9257166(+)$1	261	136	141	15.0000
UGAAA	chr11:5424207-5424473(-)$1	266	37	42	15.0000
UGAAA	chr2:152321442-152321689(+)$1	247	33	38	15.0000
UGAAA	chr3:37366585-37366878(+)$1	293	18	23	15.0000
UGAAA	chr11:62297244-62297504(-)$1	260	9	14	15.0000
UGAAA	chr2:152320603-152320891(+)$1	288	77	82	15.0000
UGAAA	chr3:37367418-37367694(+)$1	276	5	10	15.0000
UGAAA	chr18:9257562-9257825(+)$1	263	64	69	15.0000
UGAAA	chr11:62294486-62294761(-)$1	275	179	184	15.0000
UGAAA	chr1:203767723-203767998(+)$1	275	51	56	15.0000
UGAAA	chr12:104333214-104333477(+)$1	263	74	79	15.0000
UGAAA	chr11:62292333-62292590(-)$1	257	0	5	15.0000

#otherMatches

#Struct PSSM
qqqqq	chr1:214819808-214820064(+)$1	256	13	18	15.0000
gggg[	chr3:47161680-47161972(-)$1	292	91	96	15.0000
e:::e	chr11:62292795-62293047(-)$1	252	73	78	15.0000
ee::b	chr1:39800999-39801251(+)$1	252	113	118	15.0000
:::::	chr1:39799371-39799627(+)$1	256	129	134	15.0000
:::::	chr11:62300333-62300597(-)$1	264	9	14	15.0000
edddd	chr11:62293957-62294202(-)$1	245	76	81	15.0000
CC:::	chr3:37365626-37365911(+)$1	285	65	70	15.0000
dd%%%	chr2:55253888-55254152(-)$1	264	27	32	15.0000
:::::	chr3:37366895-37367145(+)$1	250	14	19	15.0000
BPPPP	chr12:46320559-46320862(-)$1	303	71	76	15.0000
DD::e	chr11:62293173-62293427(-)$1	254	129	134	15.0000
ccc22	chr2:232325097-232325355(-)$1	258	238	243	15.0000
e6666	chr4:104079676-104079954(-)$1	278	208	213	15.0000
sssss	chr11:62294333-62294601(-)$1	268	19	24	15.0000
GKKDD	chr11:62296875-62297097(-)$1	222	41	46	15.0000
==:::	chr3:37365721-37366022(+)$1	301	265	270	15.0000
ii333	chr11:62288128-62288380(-)$1	252	74	79	15.0000
cc333	chr11:62300165-62300411(-)$1	246	63	68	15.0000
MFFFF	chr2:55253828-55254060(-)$1	232	12	17	15.0000
fff::	chr11:62300887-62301156(-)$1	269	193	198	15.0000
eee::	chr1:39797400-39797686(+)$1	286	78	83	15.0000
C}A::	chr11:62286369-62286605(-)$1	236	192	197	15.0000
cmmmm	chr1:214815607-214815878(+)$1	271	9	14	15.0000
:::::	chr3:37366209-37366475(+)$1	266	2	7	15.0000
FF:::	chr11:62291909-62292150(-)$1	241	4	9	15.0000
OOOOO	chr11:62285839-62286158(-)$1	319	6	11	15.0000
arrrr	chr1:214815082-214815314(+)$1	232	131	136	15.0000
e####	chr3:37368134-37368410(+)$1	276	12	17	15.0000
ccooo	chrM:14220-14444(-)$1	224	86	91	15.0000
ff888	chr3:47163100-47163358(-)$1	258	145	150	15.0000
{FFFF	chr11:62285119-62285382(-)$1	263	25	30	15.0000
DDDDL	chr3:47165799-47166032(-)$1	233	2	7	15.0000
CCCKK	chr11:62284728-62285015(-)$1	287	9	14	15.0000
qqqqq	chr9:100700249-100700509(-)$1	260	174	179	15.0000
(((((	chr18:9256705-9256989(+)$1	284	141	146	15.0000
====!	chr18:9257991-9258247(+)$1	256	166	171	15.0000
:::::	chr3:37365549-37365808(+)$1	259	142	147	15.0000
epppp	chr15:40915379-40915642(+)$1	263	91	96	15.0000
:::::	chr3:160134046-160134300(+)$1	254	39	44	15.0000
:::::	chr7:72891847-72892162(-)$1	315	11	16	15.0000
fffff	chr15:40913964-40914222(+)$1	258	204	209	15.0000
ENNNN	chr11:62285644-62285890(-)$1	246	35	40	15.0000
dtttt	chr11:62291322-62291604(-)$1	282	130	135	15.0000
cc!!e	chr11:62292063-62292331(-)$1	268	140	145	15.0000
5555d	chr11:62295475-62295705(-)$1	230	193	198	15.0000
dddd:	chr2:55253544-55253784(-)$1	240	28	33	15.0000
FFFKK	chr11:62286572-62286828(-)$1	256	86	91	15.0000
ccc22	chr18:9256905-9257166(+)$1	261	136	141	15.0000
ff###	chr11:5424207-5424473(-)$1	266	37	42	15.0000
JJJJ:	chr2:152321442-152321689(+)$1	247	33	38	15.0000
bqqqq	chr3:37366585-37366878(+)$1	293	18	23	15.0000
:::::	chr11:62297244-62297504(-)$1	260	9	14	15.0000
c$$$$	chr2:152320603-152320891(+)$1	288	77	82	15.0000
:::::	chr3:37367418-37367694(+)$1	276	5	10	15.0000
iiii4	chr18:9257562-9257825(+)$1	263	64	69	15.0000
eeees	chr11:62294486-62294761(-)$1	275	179	184	15.0000
HH:::	chr1:203767723-203767998(+)$1	275	51	56	15.0000
00000	chr12:104333214-104333477(+)$1	263	74	79	15.0000
:::::	chr11:62292333-62292590(-)$1	257	0	5	15.0000

#DB
.....	chr1:214819808-214820064(+)$1	1	13	18	15.0000
((((.	chr3:47161680-47161972(-)$1	1	91	96	15.0000
)...(	chr11:62292795-62293047(-)$1	1	73	78	15.0000
))..(	chr1:39800999-39801251(+)$1	1	113	118	15.0000
.....	chr1:39799371-39799627(+)$1	1	129	134	15.0000
.....	chr11:62300333-62300597(-)$1	1	9	14	15.0000
)((((	chr11:62293957-62294202(-)$1	1	76	81	15.0000
((...	chr3:37365626-37365911(+)$1	1	65	70	15.0000
((...	chr2:55253888-55254152(-)$1	1	27	32	15.0000
.....	chr3:37366895-37367145(+)$1	1	14	19	15.0000
(....	chr12:46320559-46320862(-)$1	1	71	76	15.0000
((..(	chr11:62293173-62293427(-)$1	1	129	134	15.0000
)))..	chr2:232325097-232325355(-)$1	1	238	243	15.0000
)....	chr4:104079676-104079954(-)$1	1	208	213	15.0000
.....	chr11:62294333-62294601(-)$1	1	19	24	15.0000
(..((	chr11:62296875-62297097(-)$1	1	41	46	15.0000
))...	chr3:37365721-37366022(+)$1	1	265	270	15.0000
))...	chr11:62288128-62288380(-)$1	1	74	79	15.0000
))...	chr11:62300165-62300411(-)$1	1	63	68	15.0000
.((((	chr2:55253828-55254060(-)$1	1	12	17	15.0000
)))..	chr11:62300887-62301156(-)$1	1	193	198	15.0000
)))..	chr1:39797400-39797686(+)$1	1	78	83	15.0000
).)..	chr11:62286369-62286605(-)$1	1	192	197	15.0000
(....	chr1:214815607-214815878(+)$1	1	9	14	15.0000
.....	chr3:37366209-37366475(+)$1	1	2	7	15.0000
((...	chr11:62291909-62292150(-)$1	1	4	9	15.0000
.....	chr11:62285839-62286158(-)$1	1	6	11	15.0000
(....	chr1:214815082-214815314(+)$1	1	131	136	15.0000
(....	chr3:37368134-37368410(+)$1	1	12	17	15.0000
((...	chrM:14220-14444(-)$1	1	86	91	15.0000
))...	chr3:47163100-47163358(-)$1	1	145	150	15.0000
.((((	chr11:62285119-62285382(-)$1	1	25	30	15.0000
((((.	chr3:47165799-47166032(-)$1	1	2	7	15.0000
(((..	chr11:62284728-62285015(-)$1	1	9	14	15.0000
.....	chr9:100700249-100700509(-)$1	1	174	179	15.0000
.....	chr18:9256705-9256989(+)$1	1	141	146	15.0000
((((.	chr18:9257991-9258247(+)$1	1	166	171	15.0000
.....	chr3:37365549-37365808(+)$1	1	142	147	15.0000
(....	chr15:40915379-40915642(+)$1	1	91	96	15.0000
.....	chr3:160134046-160134300(+)$1	1	39	44	15.0000
.....	chr7:72891847-72892162(-)$1	1	11	16	15.0000
)))))	chr15:40913964-40914222(+)$1	1	204	209	15.0000
(....	chr11:62285644-62285890(-)$1	1	35	40	15.0000
(....	chr11:62291322-62291604(-)$1	1	130	135	15.0000
((..(	chr11:62292063-62292331(-)$1	1	140	145	15.0000
....)	chr11:62295475-62295705(-)$1	1	193	198	15.0000
)))).	chr2:55253544-55253784(-)$1	1	28	33	15.0000
(((..	chr11:62286572-62286828(-)$1	1	86	91	15.0000
)))..	chr18:9256905-9257166(+)$1	1	136	141	15.0000
((...	chr11:5424207-5424473(-)$1	1	37	42	15.0000
((((.	chr2:152321442-152321689(+)$1	1	33	38	15.0000
(....	chr3:37366585-37366878(+)$1	1	18	23	15.0000
.....	chr11:62297244-62297504(-)$1	1	9	14	15.0000
(....	chr2:152320603-152320891(+)$1	1	77	82	15.0000
.....	chr3:37367418-37367694(+)$1	1	5	10	15.0000
)))).	chr18:9257562-9257825(+)$1	1	64	69	15.0000
((((.	chr11:62294486-62294761(-)$1	1	179	184	15.0000
((...	chr1:203767723-203767998(+)$1	1	51	56	15.0000
.....	chr12:104333214-104333477(+)$1	1	74	79	15.0000
.....	chr11:62292333-62292590(-)$1	1	0	5	15.0000

#PSSM
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	

#score	900.0000000000005
#seq	60
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_transcript_m2_run1.nuc.txt

#NT
CUG	chr19:879196-879459(-)$1	263	8	11	9.0000
CUG	chr16:70563324-70563591(+)$1	267	91	94	9.0000
CUG	chr19:45981776-45981999(-)$1	223	31	34	9.0000
CUG	chr1:6245412-6245661(-)$1	249	53	56	9.0000
CUG	chr3:39452442-39452675(+)$1	233	9	12	9.0000
CUG	chr11:66395743-66395988(+)$1	245	3	6	9.0000
cug	chr20:30596120-30596325(+)$1	205	54	57	9.0000
CUG	chr2:54197735-54197981(-)$1	246	52	55	9.0000
cug	chr4:129989006-129989320(-)$1	314	18	21	9.0000
CUG	chr13:27829120-27829353(+)$1	233	36	39	9.0000
CUG	chr15:45879553-45879806(+)$1	253	12	15	9.0000
CUG	chr1:154600239-154600494(-)$1	255	34	37	9.0000
CUG	chrX:153281094-153281350(-)$1	256	47	50	9.0000
cug	chr1:167611123-167611368(+)$1	245	22	25	9.0000
cug	chr21:46493843-46494129(+)$1	286	142	145	9.0000
CUG	chr12:6879450-6879672(+)$1	222	14	17	9.0000
CUG	chr3:47046287-47046510(+)$1	223	10	13	9.0000
CUG	chr22:38902143-38902403(-)$1	260	27	30	9.0000
CUG	chr12:6862110-6862377(-)$1	267	84	87	9.0000
CUG	chr3:13461403-13461664(-)$1	261	8	11	9.0000
CUG	chr15:91422982-91423202(+)$1	220	33	36	9.0000
cug	chr19:54967043-54967274(+)$1	231	47	50	9.0000
CUG	chr5:143543574-143543830(-)$1	256	35	38	9.0000
cug	chr7:157157759-157157991(+)$1	232	9	12	9.0000
CUG	chr2:178129080-178129369(-)$1	289	80	83	9.0000
CUG	chr11:119177370-119177636(+)$1	266	23	26	9.0000
cug	chr6:34664385-34664665(-)$1	280	82	85	9.0000
CUG	chr3:9438814-9439068(-)$1	254	2	5	9.0000
CUG	chr14:102506527-102506754(+)$1	227	27	30	9.0000
CUG	chrM:515-735(+)$1	220	13	16	9.0000
CUG	chr16:30081483-30081694(+)$1	211	0	3	9.0000
cug	chr7:139025386-139025632(+)$1	246	124	127	9.0000
CUG	chr1:94313106-94313317(+)$1	211	5	8	9.0000
cug	chr14:90864163-90864437(+)$1	274	44	47	9.0000
CUG	chr19:1412157-1412410(+)$1	253	13	16	9.0000
CUG	chr7:148506992-148507248(-)$1	256	31	34	9.0000
CUG	chr11:61557156-61557406(-)$1	250	0	3	9.0000
CUG	chr19:572520-572802(+)$1	282	121	124	9.0000
CUG	chr1:16199559-16199807(+)$1	248	8	11	9.0000
cug	chr15:25653037-25653305(-)$1	268	13	16	9.0000
CUG	chr9:101867799-101868054(+)$1	255	18	21	9.0000
cug	chr3:33706242-33706507(-)$1	265	28	31	9.0000
CUG	chr6:133136351-133136615(+)$1	264	58	61	9.0000
CUG	chr6:56966557-56966808(+)$1	251	33	36	9.0000
cug	chr16:23865819-23866064(+)$1	245	16	19	9.0000
cug	chrM:4321-4547(+)$1	226	35	38	9.0000
CUG	chr22:20081616-20081880(+)$1	264	18	21	9.0000
CUG	chr20:45840730-45841003(-)$1	273	53	56	9.0000
CUG	chr17:43227632-43227876(+)$1	244	6	9	9.0000
CUG	chr21:9925492-9925757(-)$1	265	74	77	9.0000
CUG	chr17:8421848-8422072(-)$1	224	27	30	9.0000
CUG	chr17:27047467-27047734(+)$1	267	8	11	9.0000
CUG	chr8:22267339-22267630(+)$1	291	18	21	9.0000
cuG	chr11:17097223-17097468(-)$1	245	7	10	9.0000
cug	chr8:28387858-28388121(+)$1	263	63	66	9.0000
CUG	chr14:76070449-76070661(+)$1	212	8	11	9.0000
CUG	chr13:98671866-98672136(+)$1	270	1	4	9.0000
CUG	chr21:45745415-45745693(+)$1	278	43	46	9.0000
cug	chr3:195635555-195635812(-)$1	257	71	74	9.0000
cug	chr7:110971690-110971942(-)$1	252	124	127	9.0000
CUG	chr11:62285494-62285752(-)$1	258	32	35	9.0000
CUG	chr3:23959237-23959462(+)$1	225	159	162	9.0000
CUG	chr17:37309874-37310123(-)$1	249	15	18	9.0000
CUG	chr7:77166497-77166756(+)$1	259	11	14	9.0000
CUG	chr1:6245461-6245687(-)$1	226	79	82	9.0000
CUG	chr5:140699405-140699653(-)$1	248	75	78	9.0000
CUG	chr1:27106041-27106263(+)$1	222	43	46	9.0000
cug	chr1:46054906-46055172(+)$1	266	15	18	9.0000
cug	chr10:72509366-72509581(+)$1	215	60	63	9.0000
CUG	chr11:66385266-66385505(+)$1	239	23	26	9.0000
CUG	chr9:133473383-133473641(+)$1	258	96	99	9.0000
CUG	chr7:158572797-158573046(-)$1	249	75	78	9.0000
CUG	chr11:65743934-65744176(+)$1	242	35	38	9.0000
cug	chr4:79775639-79775899(+)$1	260	28	31	9.0000
CUG	chr19:1410341-1410605(+)$1	264	50	53	9.0000
CUG	chr11:66384527-66384803(+)$1	276	46	49	9.0000
CUG	chr22:22049865-22050118(+)$1	253	3	6	9.0000
CUG	chr3:9852212-9852441(+)$1	229	86	89	9.0000
CUG	chr19:14628515-14628761(-)$1	246	29	32	9.0000
CUG	chr4:39329076-39329319(-)$1	243	123	126	9.0000
cug	chr17:80808010-80808332(+)$1	322	3	6	9.0000
cug	chr2:48025680-48025944(+)$1	264	5	8	9.0000
CUG	chr19:45981811-45982031(-)$1	220	63	66	9.0000
cug	chr19:49356037-49356301(-)$1	264	29	32	9.0000
CUG	chrM:4197-4431(+)$1	234	76	79	9.0000
cug	chr2:173450133-173450401(+)$1	268	30	33	9.0000
CUG	chrX:153584400-153584673(-)$1	273	15	18	9.0000
CUG	chr19:4065992-4066239(-)$1	247	48	51	9.0000
CUG	chr10:103874439-103874671(-)$1	232	45	48	9.0000
cug	chr16:67819892-67820166(-)$1	274	8	11	9.0000
CUG	chr22:38689546-38689817(-)$1	271	9	12	9.0000
cug	chr1:11857299-11857553(-)$1	254	61	64	9.0000
CUG	chr6:32941571-32941837(+)$1	266	24	27	9.0000
CUG	chr21:45223344-45223628(+)$1	284	18	21	9.0000
CUG	chr12:69640534-69640795(+)$1	261	27	30	9.0000
CUG	chr11:75115083-75115311(+)$1	228	28	31	9.0000
CUG	chr17:76122910-76123196(-)$1	286	6	9	9.0000

#otherMatches

#Struct PSSM
DDD	chr16:88527514-88527802(+)$1	288	256	259	9.0000
cc[	chr19:879196-879459(-)$1	263	8	11	9.0000
fff	chr16:70563324-70563591(+)$1	267	91	94	9.0000
:::	chr19:45981776-45981999(-)$1	223	31	34	9.0000
:::	chr1:6245412-6245661(-)$1	249	53	56	9.0000
C::	chr3:39452442-39452675(+)$1	233	9	12	9.0000
C{D	chr11:66395743-66395988(+)$1	245	3	6	9.0000
dd!	chr20:30596120-30596325(+)$1	205	54	57	9.0000
ee]	chr2:54197735-54197981(-)$1	246	52	55	9.0000
GGG	chr4:129989006-129989320(-)$1	314	18	21	9.0000
B{G	chr13:27829120-27829353(+)$1	233	36	39	9.0000
Ecc	chr15:45879553-45879806(+)$1	253	12	15	9.0000
cdd	chr1:154600239-154600494(-)$1	255	34	37	9.0000
ccf	chrX:153281094-153281350(-)$1	256	47	50	9.0000
ebb	chr1:167611123-167611368(+)$1	245	22	25	9.0000
ggg	chr21:46493843-46494129(+)$1	286	142	145	9.0000
hhh	chr12:6879450-6879672(+)$1	222	14	17	9.0000
lle	chr3:47046287-47046510(+)$1	223	10	13	9.0000
III	chr22:38902143-38902403(-)$1	260	27	30	9.0000
==n	chr12:6862110-6862377(-)$1	267	84	87	9.0000
II{	chr3:13461403-13461664(-)$1	261	8	11	9.0000
ddd	chr15:91422982-91423202(+)$1	220	33	36	9.0000
HH{	chr19:54967043-54967274(+)$1	231	47	50	9.0000
mcc	chr5:143543574-143543830(-)$1	256	35	38	9.0000
{CC	chr7:157157759-157157991(+)$1	232	9	12	9.0000
dd[	chr2:178129080-178129369(-)$1	289	80	83	9.0000
H::	chr11:119177370-119177636(+)$1	266	23	26	9.0000
CC{	chr6:34664385-34664665(-)$1	280	82	85	9.0000
:::	chr3:9438814-9439068(-)$1	254	2	5	9.0000
eee	chr14:102506527-102506754(+)$1	227	27	30	9.0000
CCB	chrM:515-735(+)$1	220	13	16	9.0000
:::	chr16:30081483-30081694(+)$1	211	0	3	9.0000
GGG	chr7:139025386-139025632(+)$1	246	124	127	9.0000
hhh	chr1:94313106-94313317(+)$1	211	5	8	9.0000
ggg	chr14:90864163-90864437(+)$1	274	44	47	9.0000
hh[	chr19:1412157-1412410(+)$1	253	13	16	9.0000
ddd	chr7:148506992-148507248(-)$1	256	31	34	9.0000
:EE	chr11:61557156-61557406(-)$1	250	0	3	9.0000
f[c	chr19:572520-572802(+)$1	282	121	124	9.0000
epp	chr1:16199559-16199807(+)$1	248	8	11	9.0000
ggg	chr15:25653037-25653305(-)$1	268	13	16	9.0000
fff	chr9:101867799-101868054(+)$1	255	18	21	9.0000
fff	chr3:33706242-33706507(-)$1	265	28	31	9.0000
666	chr6:133136351-133136615(+)$1	264	58	61	9.0000
!cc	chr6:56966557-56966808(+)$1	251	33	36	9.0000
bbE	chr16:23865819-23866064(+)$1	245	16	19	9.0000
::f	chrM:4321-4547(+)$1	226	35	38	9.0000
EEE	chr22:20081616-20081880(+)$1	264	18	21	9.0000
KKA	chr20:45840730-45841003(-)$1	273	53	56	9.0000
KKI	chr17:43227632-43227876(+)$1	244	6	9	9.0000
ddd	chr21:9925492-9925757(-)$1	265	74	77	9.0000
ccc	chr17:8421848-8422072(-)$1	224	27	30	9.0000
::F	chr17:27047467-27047734(+)$1	267	8	11	9.0000
eee	chr8:22267339-22267630(+)$1	291	18	21	9.0000
CCK	chr11:17097223-17097468(-)$1	245	7	10	9.0000
bcc	chr8:28387858-28388121(+)$1	263	63	66	9.0000
eee	chr14:76070449-76070661(+)$1	212	8	11	9.0000
::c	chr13:98671866-98672136(+)$1	270	1	4	9.0000
GGc	chr21:45745415-45745693(+)$1	278	43	46	9.0000
ff:	chr3:195635555-195635812(-)$1	257	71	74	9.0000
c]c	chr7:110971690-110971942(-)$1	252	124	127	9.0000
FFK	chr11:62285494-62285752(-)$1	258	32	35	9.0000
22h	chr3:23959237-23959462(+)$1	225	159	162	9.0000
CCL	chr17:37309874-37310123(-)$1	249	15	18	9.0000
CCK	chr7:77166497-77166756(+)$1	259	11	14	9.0000
55g	chr1:6245461-6245687(-)$1	226	79	82	9.0000
ggg	chr5:140699405-140699653(-)$1	248	75	78	9.0000
ddd	chr1:27106041-27106263(+)$1	222	43	46	9.0000
FFF	chr1:46054906-46055172(+)$1	266	15	18	9.0000
fff	chr10:72509366-72509581(+)$1	215	60	63	9.0000
===	chr11:66385266-66385505(+)$1	239	23	26	9.0000
ddd	chr9:133473383-133473641(+)$1	258	96	99	9.0000
eee	chr7:158572797-158573046(-)$1	249	75	78	9.0000
gg[	chr11:65743934-65744176(+)$1	242	35	38	9.0000
""c	chr4:79775639-79775899(+)$1	260	28	31	9.0000
fff	chr19:1410341-1410605(+)$1	264	50	53	9.0000
fff	chr11:66384527-66384803(+)$1	276	46	49	9.0000
:::	chr22:22049865-22050118(+)$1	253	3	6	9.0000
LLD	chr3:9852212-9852441(+)$1	229	86	89	9.0000
ddd	chr19:14628515-14628761(-)$1	246	29	32	9.0000
ccl	chr4:39329076-39329319(-)$1	243	123	126	9.0000
c""	chr17:80808010-80808332(+)$1	322	3	6	9.0000
:gg	chr2:48025680-48025944(+)$1	264	5	8	9.0000
iii	chr19:45981811-45982031(-)$1	220	63	66	9.0000
[dd	chr19:49356037-49356301(-)$1	264	29	32	9.0000
cc7	chrM:4197-4431(+)$1	234	76	79	9.0000
pcc	chr2:173450133-173450401(+)$1	268	30	33	9.0000
bpp	chrX:153584400-153584673(-)$1	273	15	18	9.0000
fff	chr19:4065992-4066239(-)$1	247	48	51	9.0000
hhh	chr10:103874439-103874671(-)$1	232	45	48	9.0000
DMM	chr16:67819892-67820166(-)$1	274	8	11	9.0000
::h	chr22:38689546-38689817(-)$1	271	9	12	9.0000
nnn	chr1:11857299-11857553(-)$1	254	61	64	9.0000
C{B	chr6:32941571-32941837(+)$1	266	24	27	9.0000
III	chr21:45223344-45223628(+)$1	284	18	21	9.0000
===	chr12:69640534-69640795(+)$1	261	27	30	9.0000
dd]	chr11:75115083-75115311(+)$1	228	28	31	9.0000
ffq	chr17:76122910-76123196(-)$1	286	6	9	9.0000

#DB
)))	chr16:88527514-88527802(+)$1	1	256	259	9.0000
((.	chr19:879196-879459(-)$1	1	8	11	9.0000
(((	chr16:70563324-70563591(+)$1	1	91	94	9.0000
...	chr19:45981776-45981999(-)$1	1	31	34	9.0000
...	chr1:6245412-6245661(-)$1	1	53	56	9.0000
(..	chr3:39452442-39452675(+)$1	1	9	12	9.0000
(.(	chr11:66395743-66395988(+)$1	1	3	6	9.0000
((.	chr20:30596120-30596325(+)$1	1	54	57	9.0000
)).	chr2:54197735-54197981(-)$1	1	52	55	9.0000
(((	chr4:129989006-129989320(-)$1	1	18	21	9.0000
(.(	chr13:27829120-27829353(+)$1	1	36	39	9.0000
(((	chr15:45879553-45879806(+)$1	1	12	15	9.0000
)))	chr1:154600239-154600494(-)$1	1	34	37	9.0000
))(	chrX:153281094-153281350(-)$1	1	47	50	9.0000
)))	chr1:167611123-167611368(+)$1	1	22	25	9.0000
)))	chr21:46493843-46494129(+)$1	1	142	145	9.0000
(((	chr12:6879450-6879672(+)$1	1	14	17	9.0000
..)	chr3:47046287-47046510(+)$1	1	10	13	9.0000
(((	chr22:38902143-38902403(-)$1	1	27	30	9.0000
((.	chr12:6862110-6862377(-)$1	1	84	87	9.0000
((.	chr3:13461403-13461664(-)$1	1	8	11	9.0000
(((	chr15:91422982-91423202(+)$1	1	33	36	9.0000
((.	chr19:54967043-54967274(+)$1	1	47	50	9.0000
.))	chr5:143543574-143543830(-)$1	1	35	38	9.0000
.((	chr7:157157759-157157991(+)$1	1	9	12	9.0000
((.	chr2:178129080-178129369(-)$1	1	80	83	9.0000
(..	chr11:119177370-119177636(+)$1	1	23	26	9.0000
((.	chr6:34664385-34664665(-)$1	1	82	85	9.0000
...	chr3:9438814-9439068(-)$1	1	2	5	9.0000
(((	chr14:102506527-102506754(+)$1	1	27	30	9.0000
(((	chrM:515-735(+)$1	1	13	16	9.0000
...	chr16:30081483-30081694(+)$1	1	0	3	9.0000
)))	chr7:139025386-139025632(+)$1	1	124	127	9.0000
(((	chr1:94313106-94313317(+)$1	1	5	8	9.0000
)))	chr14:90864163-90864437(+)$1	1	44	47	9.0000
((.	chr19:1412157-1412410(+)$1	1	13	16	9.0000
(((	chr7:148506992-148507248(-)$1	1	31	34	9.0000
.((	chr11:61557156-61557406(-)$1	1	0	3	9.0000
(.(	chr19:572520-572802(+)$1	1	121	124	9.0000
(..	chr1:16199559-16199807(+)$1	1	8	11	9.0000
(((	chr15:25653037-25653305(-)$1	1	13	16	9.0000
(((	chr9:101867799-101868054(+)$1	1	18	21	9.0000
)))	chr3:33706242-33706507(-)$1	1	28	31	9.0000
...	chr6:133136351-133136615(+)$1	1	58	61	9.0000
.((	chr6:56966557-56966808(+)$1	1	33	36	9.0000
))(	chr16:23865819-23866064(+)$1	1	16	19	9.0000
..(	chrM:4321-4547(+)$1	1	35	38	9.0000
(((	chr22:20081616-20081880(+)$1	1	18	21	9.0000
..(	chr20:45840730-45841003(-)$1	1	53	56	9.0000
..(	chr17:43227632-43227876(+)$1	1	6	9	9.0000
(((	chr21:9925492-9925757(-)$1	1	74	77	9.0000
)))	chr17:8421848-8422072(-)$1	1	27	30	9.0000
..(	chr17:27047467-27047734(+)$1	1	8	11	9.0000
(((	chr8:22267339-22267630(+)$1	1	18	21	9.0000
((.	chr11:17097223-17097468(-)$1	1	7	10	9.0000
)))	chr8:28387858-28388121(+)$1	1	63	66	9.0000
(((	chr14:76070449-76070661(+)$1	1	8	11	9.0000
..(	chr13:98671866-98672136(+)$1	1	1	4	9.0000
(((	chr21:45745415-45745693(+)$1	1	43	46	9.0000
)).	chr3:195635555-195635812(-)$1	1	71	74	9.0000
).)	chr7:110971690-110971942(-)$1	1	124	127	9.0000
((.	chr11:62285494-62285752(-)$1	1	32	35	9.0000
..)	chr3:23959237-23959462(+)$1	1	159	162	9.0000
((.	chr17:37309874-37310123(-)$1	1	15	18	9.0000
((.	chr7:77166497-77166756(+)$1	1	11	14	9.0000
..)	chr1:6245461-6245687(-)$1	1	79	82	9.0000
(((	chr5:140699405-140699653(-)$1	1	75	78	9.0000
)))	chr1:27106041-27106263(+)$1	1	43	46	9.0000
(((	chr1:46054906-46055172(+)$1	1	15	18	9.0000
)))	chr10:72509366-72509581(+)$1	1	60	63	9.0000
(((	chr11:66385266-66385505(+)$1	1	23	26	9.0000
(((	chr9:133473383-133473641(+)$1	1	96	99	9.0000
(((	chr7:158572797-158573046(-)$1	1	75	78	9.0000
((.	chr11:65743934-65744176(+)$1	1	35	38	9.0000
..(	chr4:79775639-79775899(+)$1	1	28	31	9.0000
)))	chr19:1410341-1410605(+)$1	1	50	53	9.0000
)))	chr11:66384527-66384803(+)$1	1	46	49	9.0000
...	chr22:22049865-22050118(+)$1	1	3	6	9.0000
..(	chr3:9852212-9852441(+)$1	1	86	89	9.0000
)))	chr19:14628515-14628761(-)$1	1	29	32	9.0000
((.	chr4:39329076-39329319(-)$1	1	123	126	9.0000
(..	chr17:80808010-80808332(+)$1	1	3	6	9.0000
.((	chr2:48025680-48025944(+)$1	1	5	8	9.0000
(((	chr19:45981811-45982031(-)$1	1	63	66	9.0000
.((	chr19:49356037-49356301(-)$1	1	29	32	9.0000
)).	chrM:4197-4431(+)$1	1	76	79	9.0000
.))	chr2:173450133-173450401(+)$1	1	30	33	9.0000
(..	chrX:153584400-153584673(-)$1	1	15	18	9.0000
)))	chr19:4065992-4066239(-)$1	1	48	51	9.0000
(((	chr10:103874439-103874671(-)$1	1	45	48	9.0000
(..	chr16:67819892-67820166(-)$1	1	8	11	9.0000
..(	chr22:38689546-38689817(-)$1	1	9	12	9.0000
...	chr1:11857299-11857553(-)$1	1	61	64	9.0000
(.(	chr6:32941571-32941837(+)$1	1	24	27	9.0000
(((	chr21:45223344-45223628(+)$1	1	18	21	9.0000
(((	chr12:69640534-69640795(+)$1	1	27	30	9.0000
)).	chr11:75115083-75115311(+)$1	1	28	31	9.0000
((.	chr17:76122910-76123196(-)$1	1	6	9	9.0000

#PSSM
C : 0.73	c : 0.26	
U : 0.73	u : 0.26	
G : 0.74	g : 0.25	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_CDS_m1_run1.nuc.txt

#NT
GUgugugugugugugugugugcgcg	chr16:2213901-2214173(+)$1	272	239	264	58.6538
gugugugugugugugugugugugug	chr19:42398110-42398397(+)$1	287	96	121	67.1153
gugugugugugugugugugugugug	chr19:47774827-47775044(+)$1	217	120	145	67.1153
gcgugugugugugugugcauguuug	chr11:47380067-47380355(-)$1	288	62	87	52.1153
guguguaugugugcgugagugugug	chr20:62364323-62364719(+)$1	396	38	63	54.6153
gugugugugugugugugugugugug	chr22:24439200-24439492(+)$1	292	67	92	67.1153
gugugugugugugugugugugugug	chrX:47430493-47430835(+)$1	342	16	41	67.1153
gugugugugugugugugugugugug	chr1:101487177-101487581(-)$1	404	166	191	67.1153
GGAGCugugugugugugugugugcg	chr19:1496433-1496720(+)$1	287	261	286	45.5769
gugugugugugugugugugugugug	chr17:80141704-80141986(-)$1	282	28	53	67.1153
gugugugugugugugugugugugug	chr19:17397398-17397665(+)$1	267	58	83	67.1153
gugugugugcgugcgugcaucugug	chr19:7705417-7705732(+)$1	315	2	27	46.7307
gugugugugugcgugugugugugug	chr3:157820555-157820810(-)$1	255	66	91	62.8846
gugugugugugugugugugugugug	chr1:156845356-156845619(+)$1	263	136	161	67.1153
gugugugugugugugugugugugug	chr22:20110056-20110319(+)$1	263	191	216	67.1153
gugugugugugugugugugugugug	chr4:78740027-78740329(-)$1	302	100	125	67.1153
UUGUGUGUGUGUGUGGGACUUUGGG	chr10:49659563-49659835(-)$1	272	62	87	42.1153
gugugugugugugugugugugugug	chr19:17397259-17397507(+)$1	248	197	222	67.1153
UUCUCUGUGUGUCUGAGUGUGGGUG	chr1:44445582-44445823(+)$1	241	189	214	41.3461
gugugugugugcaugugugcgugug	chr1:11850810-11851087(-)$1	277	86	111	54.0384
gugugugugugugugugugugugug	chr4:946116-946380(+)$1	264	147	172	67.1153
gugugugugugugugugugugugug	chr6:33231022-33231372(-)$1	350	181	206	67.1153
gugugugugugugugugugugugug	chr22:20110119-20110364(+)$1	245	128	153	67.1153
gcgugugugugugugugcauguuug	chr11:47380211-47380459(-)$1	248	166	191	52.1153
gugugugugugugugugugugugug	chr19:17397330-17397587(+)$1	257	126	151	67.1153

#otherMatches

#Struct PSSM
i]ccc]a]bb4444ccc]bb:::::	chr17:17942662-17942935(+)$1	273	57	82	59.2307
GGG:============mmmm=====	chr16:2213901-2214173(+)$1	272	239	264	58.6538
::::::::::::::::ccc[iiiii	chr19:42398110-42398397(+)$1	287	96	121	67.1153
[a[bb[===================	chr19:47774827-47775044(+)$1	217	120	145	67.1153
nbb]ccc]eeeee22ccc]bb333a	chr11:47380067-47380355(-)$1	288	62	87	52.1153
HHHHHH{GGGGGGGKKCCC:::::=	chr20:62364323-62364719(+)$1	396	38	63	54.6153
]a]a]bb]ffffff:::::::::::	chr22:24439200-24439492(+)$1	292	67	92	67.1153
::::::::::::::::::::::ccc	chrX:47430493-47430835(+)$1	342	16	41	67.1153
xxxxxxxxxxxxxxxa]a]ccc]bb	chr1:101487177-101487581(-)$1	404	166	191	67.1153
CC}BB}CCC}A}A}A}A}CCC}BB:	chr19:1496433-1496720(+)$1	287	261	286	45.5769
JJJJJ{EEEEE{BB:::::::::::	chr17:80141704-80141986(-)$1	282	28	53	67.1153
d22ccc]ccc22eeeee::::::::	chr19:17397398-17397665(+)$1	267	58	83	67.1153
===========[a[ffffff!!ddd	chr19:7705417-7705732(+)$1	315	2	27	46.7307
KCCC{BBOOOOOOBB{BB{BB{BB{	chr3:157820555-157820810(-)$1	255	66	91	62.8846
c[a[ccc[a[a++++++++++++cc	chr1:156845356-156845619(+)$1	263	136	161	67.1153
====:::::::::::A}GGGGGGG~	chr22:20110056-20110319(+)$1	263	191	216	67.1153
[ccc[a[bbzzzzzzzzzzzzzzzz	chr4:78740027-78740329(-)$1	302	100	125	67.1153
GGGGGG{BB{DDDD{A{JJJJJJJJ	chr10:49659563-49659835(-)$1	272	62	87	42.1153
d22ccc]ccc22eeeee]a]bb:::	chr19:17397259-17397507(+)$1	248	197	222	67.1153
dddd==========bb]a]a:DDDD	chr1:44445582-44445823(+)$1	241	189	214	41.3461
ii$$$$$eeeeemmmmeeeee5555	chr1:11850810-11851087(-)$1	277	86	111	54.0384
nnnndddd:::::::::::::::::	chr4:946116-946380(+)$1	264	147	172	67.1153
gggg]bb]bb:::::CCC}CCCYYB	chr6:33231022-33231372(-)$1	350	181	206	67.1153
dd:::::::::::::::::::::::	chr22:20110119-20110364(+)$1	245	128	153	67.1153
nbb]ccc]eeeee22ccc]bb333a	chr11:47380211-47380459(-)$1	248	166	191	52.1153
d22ccc:::::::::::::::::::	chr19:17397330-17397587(+)$1	257	126	151	67.1153

#DB
).))).).))....))).)).....	chr17:17942662-17942935(+)$1	1	57	82	59.2307
))).((((((((((((....)))))	chr16:2213901-2214173(+)$1	1	239	264	58.6538
................(((.(((((	chr19:42398110-42398397(+)$1	1	96	121	67.1153
.(.((.(((((((((((((((((((	chr19:47774827-47775044(+)$1	1	120	145	67.1153
.)).))).)))))..))).))...)	chr11:47380067-47380355(-)$1	1	62	87	52.1153
((((((.(((((((..(((.....(	chr20:62364323-62364719(+)$1	1	38	63	54.6153
.).).)).))))))...........	chr22:24439200-24439492(+)$1	1	67	92	67.1153
......................(((	chrX:47430493-47430835(+)$1	1	16	41	67.1153
...............).).))).))	chr1:101487177-101487581(-)$1	1	166	191	67.1153
)).)).))).).).).).))).)).	chr19:1496433-1496720(+)$1	1	261	286	45.5769
(((((.(((((.((...........	chr17:80141704-80141986(-)$1	1	28	53	67.1153
)..))).)))..)))))........	chr19:17397398-17397665(+)$1	1	58	83	67.1153
(((((((((((.(.((((((..(((	chr19:7705417-7705732(+)$1	1	2	27	46.7307
.(((.((......((.((.((.((.	chr3:157820555-157820810(-)$1	1	66	91	62.8846
(.(.(((.(.(............((	chr1:156845356-156845619(+)$1	1	136	161	67.1153
))))...........).))))))).	chr22:20110056-20110319(+)$1	1	191	216	67.1153
.(((.(.((................	chr4:78740027-78740329(-)$1	1	100	125	67.1153
((((((.((.((((.(.((((((((	chr10:49659563-49659835(-)$1	1	62	87	42.1153
)..))).)))..))))).).))...	chr19:17397259-17397507(+)$1	1	197	222	67.1153
)))))))))))))))).).).))))	chr1:44445582-44445823(+)$1	1	189	214	41.3461
((.....(((((....)))))....	chr1:11850810-11851087(-)$1	1	86	111	54.0384
....)))).................	chr4:946116-946380(+)$1	1	147	172	67.1153
)))).)).)).....))).)))..)	chr6:33231022-33231372(-)$1	1	181	206	67.1153
)).......................	chr22:20110119-20110364(+)$1	1	128	153	67.1153
.)).))).)))))..))).))...)	chr11:47380211-47380459(-)$1	1	166	191	52.1153
)..)))...................	chr19:17397330-17397587(+)$1	1	126	151	67.1153

#PSSM
g : 0.84	G : 0.07	U : 0.07	
u : 0.76	U : 0.11	c : 0.07	G : 0.03	
g : 0.88	A : 0.03	G : 0.03	C : 0.03	
u : 0.88	U : 0.07	G : 0.03	
g : 0.88	C : 0.07	G : 0.03	
u : 0.92	U : 0.07	
g : 0.88	G : 0.07	a : 0.03	
u : 0.92	U : 0.07	
g : 0.92	G : 0.07	
u : 0.88	U : 0.07	c : 0.03	
g : 0.92	G : 0.07	
u : 0.84	c : 0.07	U : 0.07	
g : 0.84	c : 0.03	G : 0.03	C : 0.03	a : 0.03	
u : 0.84	c : 0.07	U : 0.07	
g : 0.92	G : 0.07	
u : 0.92	G : 0.03	A : 0.03	
g : 0.92	G : 0.07	
u : 0.76	c : 0.11	a : 0.03	A : 0.03	U : 0.03	
g : 0.80	a : 0.11	C : 0.03	G : 0.03	
u : 0.88	U : 0.07	c : 0.03	
g : 0.88	c : 0.03	U : 0.03	G : 0.03	
u : 0.88	c : 0.03	U : 0.03	G : 0.03	
g : 0.80	u : 0.11	G : 0.07	
u : 0.84	c : 0.07	G : 0.03	U : 0.03	
g : 0.92	G : 0.07	

#score	1576.1538461538441
#seq	26
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_CDS_m2_run1.nuc.txt

#NT
GCU	chr16:2014233-2014466(-)$1	233	32	35	9.0000
GCU	chr7:103141214-103141427(-)$1	213	39	42	9.0000
GCU	chr5:149825071-149825274(-)$1	203	76	79	9.0000
GCU	chr12:6646209-6646427(+)$1	218	42	45	9.0000
GCU	chr21:45731887-45732124(+)$1	237	11	14	9.0000
GCU	chr8:145160683-145160964(+)$1	281	4	7	9.0000
GCU	chr20:60963269-60963478(+)$1	209	14	17	9.0000
GCU	chr11:2154131-2154336(-)$1	205	11	14	9.0000
GCU	chr6:31616590-31616822(-)$1	232	3	6	9.0000
GCU	chr12:120636556-120636791(-)$1	235	6	9	9.0000
GCU	chr6:31827720-31827952(-)$1	232	48	51	9.0000
GCU	chr12:67700028-67700360(+)$1	332	9	12	9.0000
GCU	chr1:44071944-44072167(+)$1	223	44	47	9.0000
GCU	chr2:55461227-55461440(+)$1	213	59	62	9.0000
GCU	chr16:56396670-56396929(-)$1	259	5	8	9.0000
GCU	chr11:2156641-2156847(-)$1	206	42	45	9.0000
GCU	chr8:117670972-117671279(-)$1	307	123	126	9.0000
GCU	chr6:47251698-47251969(-)$1	271	117	120	9.0000
GCU	chr19:18685579-18685818(+)$1	239	61	64	9.0000
GCU	chr3:128344276-128344480(-)$1	204	7	10	9.0000
GCU	chr14:75601462-75601750(-)$1	288	0	3	9.0000
GCU	chr11:2156532-2156735(-)$1	203	8	11	9.0000
GCU	chr4:109543068-109543272(+)$1	204	76	79	9.0000
GCU	chr19:42373107-42373331(+)$1	224	28	31	9.0000
GCU	chr8:99057104-99057328(-)$1	224	3	6	9.0000
GCU	chr11:8706267-8706518(+)$1	251	5	8	9.0000
GCU	chr2:3627674-3627886(+)$1	212	38	41	9.0000
GCU	chr11:2154314-2154525(-)$1	211	14	17	9.0000
GCU	chr11:2154126-2154331(-)$1	205	6	9	9.0000
GCU	chr2:21235962-21236185(-)$1	223	96	99	9.0000
GCU	chr18:60587097-60587445(+)$1	348	4	7	9.0000
GCU	chr12:110760695-110760978(+)$1	283	66	69	9.0000
GCU	chr12:125396168-125396418(-)$1	250	60	63	9.0000
GCU	chr3:10347227-10347448(-)$1	221	8	11	9.0000
GCU	chr12:120635155-120635365(-)$1	210	16	19	9.0000
GCU	chr2:21234620-21234824(-)$1	204	2	5	9.0000
GCU	chr12:57538909-57539113(+)$1	204	1	4	9.0000
GCU	chr19:18423313-18423517(-)$1	204	13	16	9.0000
GCU	chr2:96952755-96952989(-)$1	234	54	57	9.0000
GCU	chr22:42070795-42071068(-)$1	273	70	73	9.0000
GCU	chr17:4906813-4907074(+)$1	261	3	6	9.0000
GCU	chr3:50357463-50357688(-)$1	225	30	33	9.0000
GCU	chr17:75205322-75205570(+)$1	248	26	29	9.0000
GCU	chr11:8707204-8707457(+)$1	253	21	24	9.0000
GCU	chr16:2013127-2013343(-)$1	216	55	58	9.0000
GCU	chr12:125396246-125396506(-)$1	260	148	151	9.0000
GCU	chr12:6645838-6646042(+)$1	204	65	68	9.0000
GCU	chr1:44071925-44072144(+)$1	219	63	66	9.0000
GCU	chr12:120638465-120638679(-)$1	214	26	29	9.0000
GCU	chr19:18685769-18685981(+)$1	212	21	24	9.0000
GCU	chr12:6646193-6646409(+)$1	216	13	16	9.0000
GCU	chr2:21235946-21236149(-)$1	203	60	63	9.0000
GCU	chr11:62291145-62291389(-)$1	244	74	77	9.0000
GCU	chr17:36884285-36884557(+)$1	272	4	7	9.0000
GCU	chr19:58905859-58906063(+)$1	204	12	15	9.0000
GCU	chr12:9241711-9241922(-)$1	211	52	55	9.0000
GCU	chr6:142732353-142732590(+)$1	237	53	56	9.0000
GCU	chr6:128306764-128306980(-)$1	216	6	9	9.0000
GCU	chr11:62293842-62294134(-)$1	292	194	197	9.0000
GCU	chr15:69745885-69746087(+)$1	202	62	65	9.0000
GCU	chr17:7306301-7306625(-)$1	324	81	84	9.0000
GCU	chr11:2156609-2156813(-)$1	204	8	11	9.0000
GCU	chr3:183900503-183900760(+)$1	257	15	18	9.0000
GCU	chr12:120636892-120637105(-)$1	213	58	61	9.0000
GCU	chr12:56994643-56994971(-)$1	328	47	50	9.0000
GCU	chr12:120635024-120635228(-)$1	204	0	3	9.0000
GCU	chr11:47647125-47647392(-)$1	267	76	79	9.0000
GCU	chr8:146015751-146015955(-)$1	204	55	58	9.0000
GCU	chr2:21255155-21255359(-)$1	204	56	59	9.0000
GCU	chr12:6645990-6646195(+)$1	205	23	26	9.0000
GCU	chr12:6646227-6646435(+)$1	208	24	27	9.0000
GCU	chr7:98565008-98565257(+)$1	249	38	41	9.0000
GCU	chr11:2154248-2154459(-)$1	211	122	125	9.0000
GCU	chr11:8707168-8707373(+)$1	205	57	60	9.0000
GCU	chr2:21234591-21234795(-)$1	204	53	56	9.0000
GCU	chr11:2156535-2156737(-)$1	202	10	13	9.0000
GCU	chr16:74487082-74487333(-)$1	251	63	66	9.0000
GCU	chr12:120636256-120636464(-)$1	208	14	17	9.0000
GCU	chr8:99057097-99057304(-)$1	207	17	20	9.0000
GCU	chrX:71493648-71493877(-)$1	229	33	36	9.0000
GCU	chr1:39934186-39934456(+)$1	270	32	35	9.0000
GCU	chr5:149826310-149826561(-)$1	251	21	24	9.0000
GCU	chr19:39923934-39924145(-)$1	211	73	76	9.0000
GCU	chr11:2154202-2154404(-)$1	202	67	70	9.0000
GCU	chr16:21636154-21636451(+)$1	297	150	153	9.0000
GCU	chr1:153963573-153963796(+)$1	223	16	19	9.0000
GCU	chr1:45243678-45243887(+)$1	209	115	118	9.0000
GCU	chr16:2013053-2013265(-)$1	212	123	126	9.0000
GCU	chr6:133135811-133136015(+)$1	204	2	5	9.0000
GCU	chr5:149826412-149826623(-)$1	211	14	17	9.0000
GCU	chr11:2154666-2154870(-)$1	204	26	29	9.0000
GCU	chrX:53655391-53655615(-)$1	224	6	9	9.0000
GCU	chr11:2154719-2154924(-)$1	205	2	5	9.0000
GCU	chr4:79436880-79437164(+)$1	284	0	3	9.0000

#otherMatches

#Struct PSSM
ccc	chr10:120927853-120928141(-)$1	288	80	83	9.0000
]cc	chr16:2014233-2014466(-)$1	233	32	35	9.0000
iii	chr7:103141214-103141427(-)$1	213	39	42	9.0000
EEE	chr5:149825071-149825274(-)$1	203	76	79	9.0000
JJJ	chr12:6646209-6646427(+)$1	218	42	45	9.0000
FFF	chr21:45731887-45732124(+)$1	237	11	14	9.0000
III	chr8:145160683-145160964(+)$1	281	4	7	9.0000
eee	chr20:60963269-60963478(+)$1	209	14	17	9.0000
FFF	chr11:2154131-2154336(-)$1	205	11	14	9.0000
[ee	chr6:31616590-31616822(-)$1	232	3	6	9.0000
C{G	chr12:120636556-120636791(-)$1	235	6	9	9.0000
fff	chr6:31827720-31827952(-)$1	232	48	51	9.0000
eee	chr12:67700028-67700360(+)$1	332	9	12	9.0000
CC{	chr1:44071944-44072167(+)$1	223	44	47	9.0000
ddd	chr2:55461227-55461440(+)$1	213	59	62	9.0000
III	chr16:56396670-56396929(-)$1	259	5	8	9.0000
qqq	chr11:2156641-2156847(-)$1	206	42	45	9.0000
hhh	chr8:117670972-117671279(-)$1	307	123	126	9.0000
fff	chr6:47251698-47251969(-)$1	271	117	120	9.0000
e::	chr19:18685579-18685818(+)$1	239	61	64	9.0000
D{B	chr3:128344276-128344480(-)$1	204	7	10	9.0000
DDD	chr14:75601462-75601750(-)$1	288	0	3	9.0000
a!!	chr11:2156532-2156735(-)$1	203	8	11	9.0000
emm	chr4:109543068-109543272(+)$1	204	76	79	9.0000
eee	chr19:42373107-42373331(+)$1	224	28	31	9.0000
===	chr8:99057104-99057328(-)$1	224	3	6	9.0000
ooo	chr11:8706267-8706518(+)$1	251	5	8	9.0000
GGG	chr2:3627674-3627886(+)$1	212	38	41	9.0000
b""	chr11:2154314-2154525(-)$1	211	14	17	9.0000
FFF	chr11:2154126-2154331(-)$1	205	6	9	9.0000
qqq	chr2:21235962-21236185(-)$1	223	96	99	9.0000
EEE	chr18:60587097-60587445(+)$1	348	4	7	9.0000
ccc	chr12:110760695-110760978(+)$1	283	66	69	9.0000
ddd	chr12:125396168-125396418(-)$1	250	60	63	9.0000
b!!	chr3:10347227-10347448(-)$1	221	8	11	9.0000
::g	chr12:120635155-120635365(-)$1	210	16	19	9.0000
dd[	chr2:21234620-21234824(-)$1	204	2	5	9.0000
DDD	chr12:57538909-57539113(+)$1	204	1	4	9.0000
ddd	chr19:18423313-18423517(-)$1	204	13	16	9.0000
CC=	chr2:96952755-96952989(-)$1	234	54	57	9.0000
dd:	chr22:42070795-42071068(-)$1	273	70	73	9.0000
BB{	chr17:4906813-4907074(+)$1	261	3	6	9.0000
JJd	chr3:50357463-50357688(-)$1	225	30	33	9.0000
EEE	chr17:75205322-75205570(+)$1	248	26	29	9.0000
hhh	chr11:8707204-8707457(+)$1	253	21	24	9.0000
iii	chr16:2013127-2013343(-)$1	216	55	58	9.0000
ddd	chr12:125396246-125396506(-)$1	260	148	151	9.0000
b:c	chr12:6645838-6646042(+)$1	204	65	68	9.0000
ggg	chr1:44071925-44072144(+)$1	219	63	66	9.0000
bb]	chr12:120638465-120638679(-)$1	214	26	29	9.0000
ee"	chr19:18685769-18685981(+)$1	212	21	24	9.0000
mbb	chr12:6646193-6646409(+)$1	216	13	16	9.0000
qqq	chr2:21235946-21236149(-)$1	203	60	63	9.0000
!!d	chr11:62291145-62291389(-)$1	244	74	77	9.0000
[ff	chr17:36884285-36884557(+)$1	272	4	7	9.0000
CC{	chr19:58905859-58906063(+)$1	204	12	15	9.0000
fff	chr12:9241711-9241922(-)$1	211	52	55	9.0000
bhh	chr6:142732353-142732590(+)$1	237	53	56	9.0000
HHH	chr6:128306764-128306980(-)$1	216	6	9	9.0000
cc]	chr11:62293842-62294134(-)$1	292	194	197	9.0000
:::	chr15:69745885-69746087(+)$1	202	62	65	9.0000
eee	chr17:7306301-7306625(-)$1	324	81	84	9.0000
ff!	chr11:2156609-2156813(-)$1	204	8	11	9.0000
eee	chr3:183900503-183900760(+)$1	257	15	18	9.0000
ggg	chr12:120636892-120637105(-)$1	213	58	61	9.0000
eee	chr12:56994643-56994971(-)$1	328	47	50	9.0000
:::	chr12:120635024-120635228(-)$1	204	0	3	9.0000
dd"	chr11:47647125-47647392(-)$1	267	76	79	9.0000
mmc	chr8:146015751-146015955(-)$1	204	55	58	9.0000
B{G	chr2:21255155-21255359(-)$1	204	56	59	9.0000
]ff	chr12:6645990-6646195(+)$1	205	23	26	9.0000
JJJ	chr12:6646227-6646435(+)$1	208	24	27	9.0000
FFF	chr7:98565008-98565257(+)$1	249	38	41	9.0000
ddd	chr11:2154248-2154459(-)$1	211	122	125	9.0000
hhh	chr11:8707168-8707373(+)$1	205	57	60	9.0000
H{C	chr2:21234591-21234795(-)$1	204	53	56	9.0000
a!!	chr11:2156535-2156737(-)$1	202	10	13	9.0000
ggg	chr16:74487082-74487333(-)$1	251	63	66	9.0000
cdd	chr12:120636256-120636464(-)$1	208	14	17	9.0000
EEE	chr8:99057097-99057304(-)$1	207	17	20	9.0000
EE:	chrX:71493648-71493877(-)$1	229	33	36	9.0000
EEE	chr1:39934186-39934456(+)$1	270	32	35	9.0000
DDD	chr5:149826310-149826561(-)$1	251	21	24	9.0000
bbp	chr19:39923934-39924145(-)$1	211	73	76	9.0000
ddd	chr11:2154202-2154404(-)$1	202	67	70	9.0000
DDD	chr16:21636154-21636451(+)$1	297	150	153	9.0000
EEE	chr1:153963573-153963796(+)$1	223	16	19	9.0000
!ff	chr1:45243678-45243887(+)$1	209	115	118	9.0000
b::	chr16:2013053-2013265(-)$1	212	123	126	9.0000
:::	chr6:133135811-133136015(+)$1	204	2	5	9.0000
KDD	chr5:149826412-149826623(-)$1	211	14	17	9.0000
bb]	chr11:2154666-2154870(-)$1	204	26	29	9.0000
ddq	chrX:53655391-53655615(-)$1	224	6	9	9.0000
eee	chr11:2154719-2154924(-)$1	205	2	5	9.0000
FFF	chr4:79436880-79437164(+)$1	284	0	3	9.0000

#DB
(((	chr10:120927853-120928141(-)$1	1	80	83	9.0000
.))	chr16:2014233-2014466(-)$1	1	32	35	9.0000
(((	chr7:103141214-103141427(-)$1	1	39	42	9.0000
(((	chr5:149825071-149825274(-)$1	1	76	79	9.0000
(((	chr12:6646209-6646427(+)$1	1	42	45	9.0000
(((	chr21:45731887-45732124(+)$1	1	11	14	9.0000
(((	chr8:145160683-145160964(+)$1	1	4	7	9.0000
(((	chr20:60963269-60963478(+)$1	1	14	17	9.0000
(((	chr11:2154131-2154336(-)$1	1	11	14	9.0000
.((	chr6:31616590-31616822(-)$1	1	3	6	9.0000
(.(	chr12:120636556-120636791(-)$1	1	6	9	9.0000
(((	chr6:31827720-31827952(-)$1	1	48	51	9.0000
(((	chr12:67700028-67700360(+)$1	1	9	12	9.0000
((.	chr1:44071944-44072167(+)$1	1	44	47	9.0000
(((	chr2:55461227-55461440(+)$1	1	59	62	9.0000
(((	chr16:56396670-56396929(-)$1	1	5	8	9.0000
...	chr11:2156641-2156847(-)$1	1	42	45	9.0000
(((	chr8:117670972-117671279(-)$1	1	123	126	9.0000
)))	chr6:47251698-47251969(-)$1	1	117	120	9.0000
)..	chr19:18685579-18685818(+)$1	1	61	64	9.0000
(.(	chr3:128344276-128344480(-)$1	1	7	10	9.0000
(((	chr14:75601462-75601750(-)$1	1	0	3	9.0000
(..	chr11:2156532-2156735(-)$1	1	8	11	9.0000
(..	chr4:109543068-109543272(+)$1	1	76	79	9.0000
)))	chr19:42373107-42373331(+)$1	1	28	31	9.0000
(((	chr8:99057104-99057328(-)$1	1	3	6	9.0000
...	chr11:8706267-8706518(+)$1	1	5	8	9.0000
(((	chr2:3627674-3627886(+)$1	1	38	41	9.0000
(..	chr11:2154314-2154525(-)$1	1	14	17	9.0000
(((	chr11:2154126-2154331(-)$1	1	6	9	9.0000
...	chr2:21235962-21236185(-)$1	1	96	99	9.0000
(((	chr18:60587097-60587445(+)$1	1	4	7	9.0000
(((	chr12:110760695-110760978(+)$1	1	66	69	9.0000
(((	chr12:125396168-125396418(-)$1	1	60	63	9.0000
(..	chr3:10347227-10347448(-)$1	1	8	11	9.0000
..(	chr12:120635155-120635365(-)$1	1	16	19	9.0000
((.	chr2:21234620-21234824(-)$1	1	2	5	9.0000
(((	chr12:57538909-57539113(+)$1	1	1	4	9.0000
(((	chr19:18423313-18423517(-)$1	1	13	16	9.0000
(((	chr2:96952755-96952989(-)$1	1	54	57	9.0000
)).	chr22:42070795-42071068(-)$1	1	70	73	9.0000
((.	chr17:4906813-4907074(+)$1	1	3	6	9.0000
(((	chr3:50357463-50357688(-)$1	1	30	33	9.0000
(((	chr17:75205322-75205570(+)$1	1	26	29	9.0000
(((	chr11:8707204-8707457(+)$1	1	21	24	9.0000
)))	chr16:2013127-2013343(-)$1	1	55	58	9.0000
(((	chr12:125396246-125396506(-)$1	1	148	151	9.0000
).(	chr12:6645838-6646042(+)$1	1	65	68	9.0000
)))	chr1:44071925-44072144(+)$1	1	63	66	9.0000
)).	chr12:120638465-120638679(-)$1	1	26	29	9.0000
((.	chr19:18685769-18685981(+)$1	1	21	24	9.0000
.))	chr12:6646193-6646409(+)$1	1	13	16	9.0000
...	chr2:21235946-21236149(-)$1	1	60	63	9.0000
..(	chr11:62291145-62291389(-)$1	1	74	77	9.0000
.((	chr17:36884285-36884557(+)$1	1	4	7	9.0000
((.	chr19:58905859-58906063(+)$1	1	12	15	9.0000
)))	chr12:9241711-9241922(-)$1	1	52	55	9.0000
(((	chr6:142732353-142732590(+)$1	1	53	56	9.0000
(((	chr6:128306764-128306980(-)$1	1	6	9	9.0000
)).	chr11:62293842-62294134(-)$1	1	194	197	9.0000
...	chr15:69745885-69746087(+)$1	1	62	65	9.0000
(((	chr17:7306301-7306625(-)$1	1	81	84	9.0000
((.	chr11:2156609-2156813(-)$1	1	8	11	9.0000
)))	chr3:183900503-183900760(+)$1	1	15	18	9.0000
)))	chr12:120636892-120637105(-)$1	1	58	61	9.0000
(((	chr12:56994643-56994971(-)$1	1	47	50	9.0000
...	chr12:120635024-120635228(-)$1	1	0	3	9.0000
((.	chr11:47647125-47647392(-)$1	1	76	79	9.0000
..)	chr8:146015751-146015955(-)$1	1	55	58	9.0000
(.(	chr2:21255155-21255359(-)$1	1	56	59	9.0000
.))	chr12:6645990-6646195(+)$1	1	23	26	9.0000
(((	chr12:6646227-6646435(+)$1	1	24	27	9.0000
(((	chr7:98565008-98565257(+)$1	1	38	41	9.0000
(((	chr11:2154248-2154459(-)$1	1	122	125	9.0000
(((	chr11:8707168-8707373(+)$1	1	57	60	9.0000
(.(	chr2:21234591-21234795(-)$1	1	53	56	9.0000
(..	chr11:2156535-2156737(-)$1	1	10	13	9.0000
)))	chr16:74487082-74487333(-)$1	1	63	66	9.0000
)((	chr12:120636256-120636464(-)$1	1	14	17	9.0000
(((	chr8:99057097-99057304(-)$1	1	17	20	9.0000
((.	chrX:71493648-71493877(-)$1	1	33	36	9.0000
(((	chr1:39934186-39934456(+)$1	1	32	35	9.0000
(((	chr5:149826310-149826561(-)$1	1	21	24	9.0000
((.	chr19:39923934-39924145(-)$1	1	73	76	9.0000
(((	chr11:2154202-2154404(-)$1	1	67	70	9.0000
(((	chr16:21636154-21636451(+)$1	1	150	153	9.0000
(((	chr1:153963573-153963796(+)$1	1	16	19	9.0000
.((	chr1:45243678-45243887(+)$1	1	115	118	9.0000
)..	chr16:2013053-2013265(-)$1	1	123	126	9.0000
...	chr6:133135811-133136015(+)$1	1	2	5	9.0000
.((	chr5:149826412-149826623(-)$1	1	14	17	9.0000
)).	chr11:2154666-2154870(-)$1	1	26	29	9.0000
((.	chrX:53655391-53655615(-)$1	1	6	9	9.0000
(((	chr11:2154719-2154924(-)$1	1	2	5	9.0000
(((	chr4:79436880-79437164(+)$1	1	0	3	9.0000

#PSSM
G : 1.00	
C : 1.00	
U : 1.00	

#score	855.0000000000002
#seq	95
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_UTR_m1_run2.nuc.txt

#NT
GGA	chr16:84773813-84774079(+)$1	266	3	6	9.0000
GGA	chr17:46053174-46053464(+)$1	290	32	35	9.0000
GGA	chr11:6566064-6566366(+)$1	302	57	60	9.0000
GGA	chr17:73221336-73221647(+)$1	311	30	33	9.0000
GGA	chr17:8064864-8065181(-)$1	317	36	39	9.0000
GGA	chr7:150066813-150067070(+)$1	257	42	45	9.0000
GGA	chrX:102941454-102941725(-)$1	271	68	71	9.0000
GGA	chr9:114937312-114937641(-)$1	329	21	24	9.0000
GGA	chr19:9679563-9679846(-)$1	283	5	8	9.0000
GGA	chr9:139730114-139730390(+)$1	276	38	41	9.0000
GGA	chr19:49965090-49965398(+)$1	308	49	52	9.0000
GGA	chr1:150198838-150199109(-)$1	271	4	7	9.0000
GGA	chr11:6503348-6503638(+)$1	290	118	121	9.0000
GGA	chr12:133249176-133249411(-)$1	235	78	81	9.0000
GGA	chr10:35625902-35626223(+)$1	321	33	36	9.0000
GGA	chr22:41681945-41682214(-)$1	269	33	36	9.0000
GGA	chr11:47869678-47869984(-)$1	306	9	12	9.0000
GGA	chr11:14515661-14516012(-)$1	351	32	35	9.0000
GGA	chr21:40670224-40670534(-)$1	310	94	97	9.0000
gga	chr12:116714762-116715062(-)$1	300	74	77	9.0000
GGA	chr2:135676306-135676566(+)$1	260	27	30	9.0000
GGA	chr7:152132658-152133010(-)$1	352	16	19	9.0000
GGA	chr22:18378900-18379229(-)$1	329	117	120	9.0000
GGA	chr19:54621545-54621913(+)$1	368	12	15	9.0000
GGA	chr11:64889345-64889681(-)$1	336	3	6	9.0000
GGA	chr5:891650-891887(-)$1	237	93	96	9.0000
GGA	chr7:72418844-72419119(-)$1	275	126	129	9.0000
GGA	chr1:32627906-32628231(+)$1	325	105	108	9.0000
GGA	chr17:46058528-46058794(+)$1	266	6	9	9.0000
GGA	chr13:25881924-25882212(+)$1	288	44	47	9.0000
GGA	chr4:68566649-68566956(-)$1	307	121	124	9.0000
GGA	chr12:49110297-49110592(-)$1	295	26	29	9.0000
GGA	chr11:93466153-93466385(-)$1	232	16	19	9.0000
gga	chr4:174253061-174253272(-)$1	211	14	17	9.0000
GGA	chr7:86794149-86794467(+)$1	318	29	32	9.0000
GGA	chr12:6879272-6879485(+)$1	213	54	57	9.0000
GGA	chr18:55268845-55269109(-)$1	264	17	20	9.0000
GGA	chr3:48575817-48576095(-)$1	278	96	99	9.0000
GGA	chr1:213224585-213224858(+)$1	273	2	5	9.0000
GGA	chr17:27001271-27001559(+)$1	288	33	36	9.0000
GGA	chr17:61869764-61870026(+)$1	262	22	25	9.0000
GGA	chr5:53606096-53606387(-)$1	291	0	3	9.0000
GGA	chr2:232577057-232577271(+)$1	214	3	6	9.0000
GGA	chr17:25634727-25635062(+)$1	335	169	172	9.0000
GGA	chr2:61404545-61404859(+)$1	314	25	28	9.0000
GGA	chr12:110720420-110720712(+)$1	292	96	99	9.0000
GGA	chr2:232576505-232576751(+)$1	246	15	18	9.0000
GGA	chr3:14693184-14693512(+)$1	328	89	92	9.0000
GGA	chr6:43521059-43521337(-)$1	278	111	114	9.0000
GGA	chr3:42642370-42642672(+)$1	302	19	22	9.0000
GGA	chr7:148515005-148515259(-)$1	254	49	52	9.0000
GGA	chr5:6372403-6372690(-)$1	287	20	23	9.0000
GGA	chr1:35641914-35642174(-)$1	260	75	78	9.0000
GGA	chr22:17288739-17289068(-)$1	329	62	65	9.0000
GGA	chr7:1477064-1477338(-)$1	274	15	18	9.0000
GGA	chrX:64737878-64738153(-)$1	275	24	27	9.0000
GGA	chr16:23690616-23690904(+)$1	288	26	29	9.0000
GGA	chr12:72057372-72057674(-)$1	302	43	46	9.0000
GGA	chr22:20052016-20052275(+)$1	259	11	14	9.0000
GGA	chr7:100076576-100076881(-)$1	305	19	22	9.0000
GGA	chr4:2243137-2243401(-)$1	264	116	119	9.0000
GGA	chrX:53440095-53440388(-)$1	293	11	14	9.0000
GGA	chr4:89670804-89671146(-)$1	342	56	59	9.0000
GGA	chr12:132203940-132204192(+)$1	252	83	86	9.0000
GGA	chr3:142740212-142740496(+)$1	284	137	140	9.0000
GGA	chr17:61919894-61920355(-)$1	461	18	21	9.0000
gga	chr14:73577588-73577877(+)$1	289	12	15	9.0000
GGA	chr7:4815227-4815499(+)$1	272	37	40	9.0000
GGA	chr3:9854829-9855040(+)$1	211	63	66	9.0000
GGA	chr15:91537533-91537796(-)$1	263	41	44	9.0000
GGA	chr7:131099299-131099611(+)$1	312	51	54	9.0000
GGA	chr1:167992135-167992415(+)$1	280	122	125	9.0000
GGA	chr19:23990554-23990819(+)$1	265	17	20	9.0000
GGA	chr4:1341776-1342041(+)$1	265	0	3	9.0000
GGA	chr13:107220308-107220555(-)$1	247	4	7	9.0000
GGA	chr16:841207-841489(+)$1	282	26	29	9.0000
GGA	chr17:46052501-46052788(+)$1	287	24	27	9.0000
GGA	chr15:35261740-35262031(-)$1	291	35	38	9.0000
GGA	chr8:145742990-145743305(-)$1	315	3	6	9.0000
GGA	chr3:182631573-182631879(+)$1	306	107	110	9.0000
GGA	chr11:10829792-10830060(-)$1	268	7	10	9.0000
GGA	chr14:23770468-23770841(-)$1	373	100	103	9.0000
GGA	chr17:4788717-4788988(+)$1	271	11	14	9.0000
GGA	chr8:26151076-26151372(+)$1	296	31	34	9.0000
GGA	chr12:9094880-9095151(-)$1	271	74	77	9.0000
GGA	chr21:34931852-34932125(+)$1	273	109	112	9.0000
GGA	chr17:26911051-26911324(-)$1	273	12	15	9.0000
GGA	chr1:28834546-28834761(+)$1	215	92	95	9.0000
GGA	chr16:2221481-2221745(+)$1	264	34	37	9.0000
GGA	chr14:21461199-21461472(+)$1	273	56	59	9.0000
GGA	chr1:1250065-1250328(-)$1	263	73	76	9.0000
GGA	chr19:8931755-8932073(-)$1	318	108	111	9.0000
GGA	chr6:29595187-29595442(-)$1	255	98	101	9.0000
GGA	chr1:211449500-211449804(+)$1	304	51	54	9.0000
GGA	chr19:42399330-42399627(+)$1	297	37	40	9.0000
GGA	chrX:153580229-153580479(-)$1	250	33	36	9.0000
gga	chr14:74755277-74755573(-)$1	296	8	11	9.0000
GGA	chrX:151130798-151131086(-)$1	288	80	83	9.0000
GGA	chr11:10829878-10830154(-)$1	276	0	3	9.0000

#otherMatches

#Struct PSSM
:::	chr1:90493118-90493355(+)$1	237	1	4	9.0000
bb!	chr16:84773813-84774079(+)$1	266	3	6	9.0000
c[e	chr17:46053174-46053464(+)$1	290	32	35	9.0000
bb:	chr11:6566064-6566366(+)$1	302	57	60	9.0000
aoo	chr17:73221336-73221647(+)$1	311	30	33	9.0000
ddn	chr17:8064864-8065181(-)$1	317	36	39	9.0000
ca!	chr7:150066813-150067070(+)$1	257	42	45	9.0000
dd[	chrX:102941454-102941725(-)$1	271	68	71	9.0000
ee:	chr9:114937312-114937641(-)$1	329	21	24	9.0000
:::	chr19:9679563-9679846(-)$1	283	5	8	9.0000
ee"	chr9:139730114-139730390(+)$1	276	38	41	9.0000
fff	chr19:49965090-49965398(+)$1	308	49	52	9.0000
:::	chr1:150198838-150199109(-)$1	271	4	7	9.0000
==%	chr11:6503348-6503638(+)$1	290	118	121	9.0000
CCC	chr12:133249176-133249411(-)$1	235	78	81	9.0000
ff!	chr10:35625902-35626223(+)$1	321	33	36	9.0000
fff	chr22:41681945-41682214(-)$1	269	33	36	9.0000
HHH	chr11:47869678-47869984(-)$1	306	9	12	9.0000
ccc	chr11:14515661-14516012(-)$1	351	32	35	9.0000
ddd	chr21:40670224-40670534(-)$1	310	94	97	9.0000
eee	chr12:116714762-116715062(-)$1	300	74	77	9.0000
bb[	chr2:135676306-135676566(+)$1	260	27	30	9.0000
DDN	chr7:152132658-152133010(-)$1	352	16	19	9.0000
hhh	chr22:18378900-18379229(-)$1	329	117	120	9.0000
GLL	chr19:54621545-54621913(+)$1	368	12	15	9.0000
DDD	chr11:64889345-64889681(-)$1	336	3	6	9.0000
aoo	chr5:891650-891887(-)$1	237	93	96	9.0000
ddd	chr7:72418844-72419119(-)$1	275	126	129	9.0000
{BB	chr1:32627906-32628231(+)$1	325	105	108	9.0000
DDH	chr17:46058528-46058794(+)$1	266	6	9	9.0000
fff	chr13:25881924-25882212(+)$1	288	44	47	9.0000
ggg	chr4:68566649-68566956(-)$1	307	121	124	9.0000
cc:	chr12:49110297-49110592(-)$1	295	26	29	9.0000
EE{	chr11:93466153-93466385(-)$1	232	16	19	9.0000
:::	chr4:174253061-174253272(-)$1	211	14	17	9.0000
vvv	chr7:86794149-86794467(+)$1	318	29	32	9.0000
dd]	chr12:6879272-6879485(+)$1	213	54	57	9.0000
:::	chr18:55268845-55269109(-)$1	264	17	20	9.0000
ddd	chr3:48575817-48576095(-)$1	278	96	99	9.0000
cc!	chr1:213224585-213224858(+)$1	273	2	5	9.0000
fff	chr17:27001271-27001559(+)$1	288	33	36	9.0000
FFK	chr17:61869764-61870026(+)$1	262	22	25	9.0000
:dd	chr5:53606096-53606387(-)$1	291	0	3	9.0000
GGG	chr2:232577057-232577271(+)$1	214	3	6	9.0000
$$c	chr17:25634727-25635062(+)$1	335	169	172	9.0000
mgg	chr2:61404545-61404859(+)$1	314	25	28	9.0000
III	chr12:110720420-110720712(+)$1	292	96	99	9.0000
""d	chr2:232576505-232576751(+)$1	246	15	18	9.0000
dee	chr3:14693184-14693512(+)$1	328	89	92	9.0000
ddd	chr6:43521059-43521337(-)$1	278	111	114	9.0000
ddd	chr3:42642370-42642672(+)$1	302	19	22	9.0000
BB{	chr7:148515005-148515259(-)$1	254	49	52	9.0000
BKK	chr5:6372403-6372690(-)$1	287	20	23	9.0000
ggg	chr1:35641914-35642174(-)$1	260	75	78	9.0000
3ii	chr22:17288739-17289068(-)$1	329	62	65	9.0000
RRR	chr7:1477064-1477338(-)$1	274	15	18	9.0000
FFF	chrX:64737878-64738153(-)$1	275	24	27	9.0000
d::	chr16:23690616-23690904(+)$1	288	26	29	9.0000
c::	chr12:72057372-72057674(-)$1	302	43	46	9.0000
DKK	chr22:20052016-20052275(+)$1	259	11	14	9.0000
III	chr7:100076576-100076881(-)$1	305	19	22	9.0000
nnn	chr4:2243137-2243401(-)$1	264	116	119	9.0000
ddr	chrX:53440095-53440388(-)$1	293	11	14	9.0000
III	chr4:89670804-89671146(-)$1	342	56	59	9.0000
bb!	chr12:132203940-132204192(+)$1	252	83	86	9.0000
eee	chr3:142740212-142740496(+)$1	284	137	140	9.0000
DDD	chr17:61919894-61920355(-)$1	461	18	21	9.0000
:::	chr14:73577588-73577877(+)$1	289	12	15	9.0000
eep	chr7:4815227-4815499(+)$1	272	37	40	9.0000
:::	chr3:9854829-9855040(+)$1	211	63	66	9.0000
hhh	chr15:91537533-91537796(-)$1	263	41	44	9.0000
:::	chr7:131099299-131099611(+)$1	312	51	54	9.0000
b[d	chr1:167992135-167992415(+)$1	280	122	125	9.0000
HHH	chr19:23990554-23990819(+)$1	265	17	20	9.0000
::=	chr4:1341776-1342041(+)$1	265	0	3	9.0000
:A{	chr13:107220308-107220555(-)$1	247	4	7	9.0000
GG:	chr16:841207-841489(+)$1	282	26	29	9.0000
FF:	chr17:46052501-46052788(+)$1	287	24	27	9.0000
CKK	chr15:35261740-35262031(-)$1	291	35	38	9.0000
CC:	chr8:145742990-145743305(-)$1	315	3	6	9.0000
GGG	chr3:182631573-182631879(+)$1	306	107	110	9.0000
:::	chr11:10829792-10830060(-)$1	268	7	10	9.0000
rrr	chr14:23770468-23770841(-)$1	373	100	103	9.0000
eee	chr17:4788717-4788988(+)$1	271	11	14	9.0000
FFF	chr8:26151076-26151372(+)$1	296	31	34	9.0000
iii	chr12:9094880-9095151(-)$1	271	74	77	9.0000
dtt	chr21:34931852-34932125(+)$1	273	109	112	9.0000
###	chr17:26911051-26911324(-)$1	273	12	15	9.0000
ggg	chr1:28834546-28834761(+)$1	215	92	95	9.0000
:::	chr16:2221481-2221745(+)$1	264	34	37	9.0000
cc2	chr14:21461199-21461472(+)$1	273	56	59	9.0000
JJJ	chr1:1250065-1250328(-)$1	263	73	76	9.0000
ggg	chr19:8931755-8932073(-)$1	318	108	111	9.0000
hhh	chr6:29595187-29595442(-)$1	255	98	101	9.0000
ggg	chr1:211449500-211449804(+)$1	304	51	54	9.0000
gcc	chr19:42399330-42399627(+)$1	297	37	40	9.0000
g55	chrX:153580229-153580479(-)$1	250	33	36	9.0000
:::	chr14:74755277-74755573(-)$1	296	8	11	9.0000
cc[	chrX:151130798-151131086(-)$1	288	80	83	9.0000
:A{	chr11:10829878-10830154(-)$1	276	0	3	9.0000

#DB
...	chr1:90493118-90493355(+)$1	1	1	4	9.0000
((.	chr16:84773813-84774079(+)$1	1	3	6	9.0000
(.(	chr17:46053174-46053464(+)$1	1	32	35	9.0000
)).	chr11:6566064-6566366(+)$1	1	57	60	9.0000
(..	chr17:73221336-73221647(+)$1	1	30	33	9.0000
((.	chr17:8064864-8065181(-)$1	1	36	39	9.0000
((.	chr7:150066813-150067070(+)$1	1	42	45	9.0000
((.	chrX:102941454-102941725(-)$1	1	68	71	9.0000
)).	chr9:114937312-114937641(-)$1	1	21	24	9.0000
...	chr19:9679563-9679846(-)$1	1	5	8	9.0000
((.	chr9:139730114-139730390(+)$1	1	38	41	9.0000
)((	chr19:49965090-49965398(+)$1	1	49	52	9.0000
...	chr1:150198838-150199109(-)$1	1	4	7	9.0000
((.	chr11:6503348-6503638(+)$1	1	118	121	9.0000
(((	chr12:133249176-133249411(-)$1	1	78	81	9.0000
((.	chr10:35625902-35626223(+)$1	1	33	36	9.0000
)))	chr22:41681945-41682214(-)$1	1	33	36	9.0000
(((	chr11:47869678-47869984(-)$1	1	9	12	9.0000
(((	chr11:14515661-14516012(-)$1	1	32	35	9.0000
)))	chr21:40670224-40670534(-)$1	1	94	97	9.0000
(((	chr12:116714762-116715062(-)$1	1	74	77	9.0000
((.	chr2:135676306-135676566(+)$1	1	27	30	9.0000
((.	chr7:152132658-152133010(-)$1	1	16	19	9.0000
)))	chr22:18378900-18379229(-)$1	1	117	120	9.0000
(..	chr19:54621545-54621913(+)$1	1	12	15	9.0000
(((	chr11:64889345-64889681(-)$1	1	3	6	9.0000
(..	chr5:891650-891887(-)$1	1	93	96	9.0000
(((	chr7:72418844-72419119(-)$1	1	126	129	9.0000
.((	chr1:32627906-32628231(+)$1	1	105	108	9.0000
(((	chr17:46058528-46058794(+)$1	1	6	9	9.0000
)))	chr13:25881924-25882212(+)$1	1	44	47	9.0000
)))	chr4:68566649-68566956(-)$1	1	121	124	9.0000
)).	chr12:49110297-49110592(-)$1	1	26	29	9.0000
((.	chr11:93466153-93466385(-)$1	1	16	19	9.0000
...	chr4:174253061-174253272(-)$1	1	14	17	9.0000
...	chr7:86794149-86794467(+)$1	1	29	32	9.0000
)).	chr12:6879272-6879485(+)$1	1	54	57	9.0000
...	chr18:55268845-55269109(-)$1	1	17	20	9.0000
(((	chr3:48575817-48576095(-)$1	1	96	99	9.0000
((.	chr1:213224585-213224858(+)$1	1	2	5	9.0000
)))	chr17:27001271-27001559(+)$1	1	33	36	9.0000
((.	chr17:61869764-61870026(+)$1	1	22	25	9.0000
.((	chr5:53606096-53606387(-)$1	1	0	3	9.0000
(((	chr2:232577057-232577271(+)$1	1	3	6	9.0000
..(	chr17:25634727-25635062(+)$1	1	169	172	9.0000
.))	chr2:61404545-61404859(+)$1	1	25	28	9.0000
(((	chr12:110720420-110720712(+)$1	1	96	99	9.0000
..(	chr2:232576505-232576751(+)$1	1	15	18	9.0000
(((	chr3:14693184-14693512(+)$1	1	89	92	9.0000
(((	chr6:43521059-43521337(-)$1	1	111	114	9.0000
(((	chr3:42642370-42642672(+)$1	1	19	22	9.0000
((.	chr7:148515005-148515259(-)$1	1	49	52	9.0000
(..	chr5:6372403-6372690(-)$1	1	20	23	9.0000
)))	chr1:35641914-35642174(-)$1	1	75	78	9.0000
.))	chr22:17288739-17289068(-)$1	1	62	65	9.0000
...	chr7:1477064-1477338(-)$1	1	15	18	9.0000
(((	chrX:64737878-64738153(-)$1	1	24	27	9.0000
)..	chr16:23690616-23690904(+)$1	1	26	29	9.0000
)..	chr12:72057372-72057674(-)$1	1	43	46	9.0000
(..	chr22:20052016-20052275(+)$1	1	11	14	9.0000
(((	chr7:100076576-100076881(-)$1	1	19	22	9.0000
...	chr4:2243137-2243401(-)$1	1	116	119	9.0000
((.	chrX:53440095-53440388(-)$1	1	11	14	9.0000
)))	chr4:89670804-89671146(-)$1	1	56	59	9.0000
((.	chr12:132203940-132204192(+)$1	1	83	86	9.0000
)))	chr3:142740212-142740496(+)$1	1	137	140	9.0000
(((	chr17:61919894-61920355(-)$1	1	18	21	9.0000
...	chr14:73577588-73577877(+)$1	1	12	15	9.0000
((.	chr7:4815227-4815499(+)$1	1	37	40	9.0000
...	chr3:9854829-9855040(+)$1	1	63	66	9.0000
)))	chr15:91537533-91537796(-)$1	1	41	44	9.0000
...	chr7:131099299-131099611(+)$1	1	51	54	9.0000
(.(	chr1:167992135-167992415(+)$1	1	122	125	9.0000
(((	chr19:23990554-23990819(+)$1	1	17	20	9.0000
..(	chr4:1341776-1342041(+)$1	1	0	3	9.0000
.(.	chr13:107220308-107220555(-)$1	1	4	7	9.0000
((.	chr16:841207-841489(+)$1	1	26	29	9.0000
((.	chr17:46052501-46052788(+)$1	1	24	27	9.0000
(..	chr15:35261740-35262031(-)$1	1	35	38	9.0000
((.	chr8:145742990-145743305(-)$1	1	3	6	9.0000
(((	chr3:182631573-182631879(+)$1	1	107	110	9.0000
...	chr11:10829792-10830060(-)$1	1	7	10	9.0000
...	chr14:23770468-23770841(-)$1	1	100	103	9.0000
(((	chr17:4788717-4788988(+)$1	1	11	14	9.0000
(((	chr8:26151076-26151372(+)$1	1	31	34	9.0000
)))	chr12:9094880-9095151(-)$1	1	74	77	9.0000
(..	chr21:34931852-34932125(+)$1	1	109	112	9.0000
...	chr17:26911051-26911324(-)$1	1	12	15	9.0000
)))	chr1:28834546-28834761(+)$1	1	92	95	9.0000
...	chr16:2221481-2221745(+)$1	1	34	37	9.0000
)).	chr14:21461199-21461472(+)$1	1	56	59	9.0000
(((	chr1:1250065-1250328(-)$1	1	73	76	9.0000
)))	chr19:8931755-8932073(-)$1	1	108	111	9.0000
)))	chr6:29595187-29595442(-)$1	1	98	101	9.0000
(((	chr1:211449500-211449804(+)$1	1	51	54	9.0000
)((	chr19:42399330-42399627(+)$1	1	37	40	9.0000
)..	chrX:153580229-153580479(-)$1	1	33	36	9.0000
...	chr14:74755277-74755573(-)$1	1	8	11	9.0000
((.	chrX:151130798-151131086(-)$1	1	80	83	9.0000
.(.	chr11:10829878-10830154(-)$1	1	0	3	9.0000

#PSSM
G : 0.95	g : 0.05	
G : 0.95	g : 0.05	
A : 0.95	a : 0.05	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_transcript_m3_run1.nuc.txt

#NT
UGA	chr19:48960025-48960276(+)$1	251	30	33	9.0000
UGA	chr3:15481494-15481763(+)$1	269	5	8	9.0000
UGA	chr19:10501845-10502115(-)$1	270	79	82	9.0000
UGA	chr4:106767741-106767973(+)$1	232	8	11	9.0000
UGA	chr19:14588842-14589126(-)$1	284	21	24	9.0000
UGA	chr5:112354230-112354500(+)$1	270	74	77	9.0000
UGA	chr17:46199297-46199586(+)$1	289	66	69	9.0000
UGA	chr11:118964688-118964924(-)$1	236	8	11	9.0000
UGA	chr3:185361945-185362180(-)$1	235	51	54	9.0000
uga	chr16:23680746-23681008(+)$1	262	11	14	9.0000
UGA	chr2:70903229-70903483(-)$1	254	76	79	9.0000
uga	chr1:179325950-179326196(+)$1	246	148	151	9.0000
uga	chr12:123254636-123254844(+)$1	208	56	59	9.0000
UGA	chr8:101931447-101931719(-)$1	272	9	12	9.0000
UGA	chr17:79878019-79878260(-)$1	241	86	89	9.0000
uga	chr22:39428700-39429014(+)$1	314	0	3	9.0000
UGA	chr9:111780634-111780863(-)$1	229	17	20	9.0000
UGA	chr3:47628524-47628804(-)$1	280	5	8	9.0000
uga	chr2:206986809-206987131(-)$1	322	42	45	9.0000
UGA	chr22:21352827-21353081(+)$1	254	35	38	9.0000
UGA	chr1:9673853-9674148(+)$1	295	97	100	9.0000
UGA	chr12:54745236-54745451(+)$1	215	80	83	9.0000
UGA	chr5:72205311-72205530(+)$1	219	83	86	9.0000
UGA	chr17:35876436-35876676(-)$1	240	40	43	9.0000
UGA	chr2:220084036-220084272(-)$1	236	84	87	9.0000
UGA	chr8:22478351-22478612(-)$1	261	124	127	9.0000
UGA	chr1:202860891-202861118(-)$1	227	65	68	9.0000
UGA	chr5:96110428-96110667(-)$1	239	32	35	9.0000
UGA	chr6:41065952-41066271(+)$1	319	36	39	9.0000
UGA	chr14:100800599-100800836(-)$1	237	31	34	9.0000
UGA	chr10:45952059-45952323(-)$1	264	160	163	9.0000
UGA	chr2:99812155-99812372(+)$1	217	3	6	9.0000
UGA	chr17:80349939-80350179(-)$1	240	21	24	9.0000
UGA	chr12:53583515-53583787(+)$1	272	44	47	9.0000
UGA	chr2:85549635-85549876(-)$1	241	46	49	9.0000
UGA	chr19:7536771-7537020(+)$1	249	104	107	9.0000
UGA	chr19:6211364-6211641(-)$1	277	7	10	9.0000
UGA	chr1:27662108-27662392(+)$1	284	8	11	9.0000
UGA	chr2:277706-277957(+)$1	251	52	55	9.0000
UGA	chr14:92628843-92629101(+)$1	258	54	57	9.0000
UGA	chr1:27731857-27732082(-)$1	225	8	11	9.0000
UGA	chr7:75956827-75957061(-)$1	234	117	120	9.0000
UGA	chr2:55776567-55776856(-)$1	289	122	125	9.0000
UGA	chr1:87572460-87572682(+)$1	222	13	16	9.0000
UGA	chr1:6682947-6683206(+)$1	259	48	51	9.0000
UGA	chr19:13262233-13262457(+)$1	224	14	17	9.0000
UGA	chr17:73059931-73060207(+)$1	276	25	28	9.0000
UGA	chr9:136229693-136229946(-)$1	253	74	77	9.0000
UGA	chr5:150647443-150647703(+)$1	260	10	13	9.0000
UGA	chr1:162497887-162498138(+)$1	251	1	4	9.0000
UGA	chr3:15482050-15482297(+)$1	247	124	127	9.0000
UGA	chr5:139947219-139947492(+)$1	273	163	166	9.0000
UGA	chr7:44748077-44748341(+)$1	264	27	30	9.0000
UGA	chr1:146630238-146630480(-)$1	242	1	4	9.0000
UGA	chr12:123254509-123254755(+)$1	246	3	6	9.0000
UGA	chr10:35859122-35859353(+)$1	231	80	83	9.0000
UGA	chr3:50367142-50367434(-)$1	292	10	13	9.0000
UGA	chr11:45954862-45955149(-)$1	287	128	131	9.0000
UGA	chr6:34556474-34556708(-)$1	234	24	27	9.0000
UGA	chr12:121158422-121158684(+)$1	262	33	36	9.0000
UGA	chr1:32660907-32661182(+)$1	275	137	140	9.0000
uga	chr19:48956789-48957055(+)$1	266	32	35	9.0000
UGA	chr2:277802-278062(+)$1	260	40	43	9.0000
UGA	chr16:30786107-30786405(+)$1	298	215	218	9.0000
UGA	chr12:122627385-122627628(+)$1	243	136	139	9.0000
UGA	chr19:10663685-10663941(+)$1	256	68	71	9.0000
UGA	chr4:1717792-1718063(-)$1	271	17	20	9.0000
UGA	chr3:183173405-183173659(+)$1	254	58	61	9.0000
uga	chr17:27271434-27271656(-)$1	222	36	39	9.0000
UGA	chr12:93794303-93794542(+)$1	239	42	45	9.0000
UGA	chr10:74093457-74093738(-)$1	281	53	56	9.0000
UGA	chr11:117041286-117041555(+)$1	269	16	19	9.0000
UGA	chr2:71214959-71215208(-)$1	249	123	126	9.0000
UGA	chrX:153734669-153734998(-)$1	329	169	172	9.0000
UGA	chr3:48199677-48199948(-)$1	271	23	26	9.0000
UGA	chr1:12268532-12268779(+)$1	247	9	12	9.0000
UGA	chr22:39917677-39917896(+)$1	219	0	3	9.0000
UGA	chr17:41845177-41845433(-)$1	256	9	12	9.0000
UGA	chr5:141380574-141380812(-)$1	238	100	103	9.0000
UGA	chr9:136230132-136230378(-)$1	246	141	144	9.0000
UGA	chr16:27472058-27472330(-)$1	272	11	14	9.0000
UGA	chr1:155868905-155869137(-)$1	232	25	28	9.0000
UGA	chr5:644348-644627(+)$1	279	22	25	9.0000
UGA	chr9:137329374-137329704(+)$1	330	39	42	9.0000
UGA	chr11:117039813-117040070(+)$1	257	56	59	9.0000
UGA	chr7:30120289-30120544(+)$1	255	11	14	9.0000
uga	chr17:73885776-73886048(-)$1	272	24	27	9.0000
UGA	chr6:3114318-3114568(+)$1	250	63	66	9.0000
UGA	chr5:159492233-159492502(+)$1	269	1	4	9.0000
UGA	chr12:49330753-49331013(-)$1	260	24	27	9.0000
UGA	chr17:56168131-56168385(+)$1	254	9	12	9.0000
uga	chr19:29104869-29105091(+)$1	222	69	72	9.0000
UGA	chr11:61634212-61634463(+)$1	251	51	54	9.0000
UGA	chr9:127282290-127282555(-)$1	265	19	22	9.0000
UGA	chr11:252723-253068(+)$1	345	35	38	9.0000
UGA	chr14:74184140-74184460(-)$1	320	116	119	9.0000
UGA	chr2:219460051-219460308(+)$1	257	4	7	9.0000

#otherMatches

#Struct PSSM
HHH	chr16:23476821-23477064(-)$1	243	12	15	9.0000
BKK	chr19:48960025-48960276(+)$1	251	30	33	9.0000
CC{	chr3:15481494-15481763(+)$1	269	5	8	9.0000
occ	chr19:10501845-10502115(-)$1	270	79	82	9.0000
FFF	chr4:106767741-106767973(+)$1	232	8	11	9.0000
GG{	chr19:14588842-14589126(-)$1	284	21	24	9.0000
qqq	chr5:112354230-112354500(+)$1	270	74	77	9.0000
vvv	chr17:46199297-46199586(+)$1	289	66	69	9.0000
DKK	chr11:118964688-118964924(-)$1	236	8	11	9.0000
ccc	chr3:185361945-185362180(-)$1	235	51	54	9.0000
FKK	chr16:23680746-23681008(+)$1	262	11	14	9.0000
::e	chr2:70903229-70903483(-)$1	254	76	79	9.0000
ffo	chr1:179325950-179326196(+)$1	246	148	151	9.0000
cc%	chr12:123254636-123254844(+)$1	208	56	59	9.0000
d++	chr8:101931447-101931719(-)$1	272	9	12	9.0000
:dd	chr17:79878019-79878260(-)$1	241	86	89	9.0000
:::	chr22:39428700-39429014(+)$1	314	0	3	9.0000
FFF	chr9:111780634-111780863(-)$1	229	17	20	9.0000
DDD	chr3:47628524-47628804(-)$1	280	5	8	9.0000
III	chr2:206986809-206987131(-)$1	322	42	45	9.0000
dd!	chr22:21352827-21353081(+)$1	254	35	38	9.0000
mdd	chr1:9673853-9674148(+)$1	295	97	100	9.0000
}HH	chr12:54745236-54745451(+)$1	215	80	83	9.0000
e[c	chr5:72205311-72205530(+)$1	219	83	86	9.0000
eee	chr17:35876436-35876676(-)$1	240	40	43	9.0000
qqq	chr2:220084036-220084272(-)$1	236	84	87	9.0000
ddd	chr8:22478351-22478612(-)$1	261	124	127	9.0000
ggg	chr1:202860891-202861118(-)$1	227	65	68	9.0000
ii[	chr5:96110428-96110667(-)$1	239	32	35	9.0000
JJJ	chr6:41065952-41066271(+)$1	319	36	39	9.0000
:::	chr14:100800599-100800836(-)$1	237	31	34	9.0000
eff	chr10:45952059-45952323(-)$1	264	160	163	9.0000
DD:	chr2:99812155-99812372(+)$1	217	3	6	9.0000
ee:	chr17:80349939-80350179(-)$1	240	21	24	9.0000
ebb	chr12:53583515-53583787(+)$1	272	44	47	9.0000
yyy	chr2:85549635-85549876(-)$1	241	46	49	9.0000
pee	chr19:7536771-7537020(+)$1	249	104	107	9.0000
FFF	chr19:6211364-6211641(-)$1	277	7	10	9.0000
:bb	chr1:27662108-27662392(+)$1	284	8	11	9.0000
!cc	chr2:277706-277957(+)$1	251	52	55	9.0000
c66	chr14:92628843-92629101(+)$1	258	54	57	9.0000
ooo	chr1:27731857-27732082(-)$1	225	8	11	9.0000
iii	chr7:75956827-75957061(-)$1	234	117	120	9.0000
===	chr2:55776567-55776856(-)$1	289	122	125	9.0000
ee[	chr1:87572460-87572682(+)$1	222	13	16	9.0000
:II	chr1:6682947-6683206(+)$1	259	48	51	9.0000
ddd	chr19:13262233-13262457(+)$1	224	14	17	9.0000
ggg	chr17:73059931-73060207(+)$1	276	25	28	9.0000
HLL	chr9:136229693-136229946(-)$1	253	74	77	9.0000
:::	chr5:150647443-150647703(+)$1	260	10	13	9.0000
DDD	chr1:162497887-162498138(+)$1	251	1	4	9.0000
ddd	chr3:15482050-15482297(+)$1	247	124	127	9.0000
c33	chr5:139947219-139947492(+)$1	273	163	166	9.0000
NNN	chr7:44748077-44748341(+)$1	264	27	30	9.0000
DDD	chr1:146630238-146630480(-)$1	242	1	4	9.0000
HHH	chr12:123254509-123254755(+)$1	246	3	6	9.0000
g##	chr10:35859122-35859353(+)$1	231	80	83	9.0000
hhh	chr3:50367142-50367434(-)$1	292	10	13	9.0000
mmm	chr11:45954862-45955149(-)$1	287	128	131	9.0000
CC{	chr6:34556474-34556708(-)$1	234	24	27	9.0000
FF{	chr12:121158422-121158684(+)$1	262	33	36	9.0000
f[e	chr1:32660907-32661182(+)$1	275	137	140	9.0000
ddd	chr19:48956789-48957055(+)$1	266	32	35	9.0000
dnn	chr2:277802-278062(+)$1	260	40	43	9.0000
bb3	chr16:30786107-30786405(+)$1	298	215	218	9.0000
ggg	chr12:122627385-122627628(+)$1	243	136	139	9.0000
{BB	chr19:10663685-10663941(+)$1	256	68	71	9.0000
ebb	chr4:1717792-1718063(-)$1	271	17	20	9.0000
gg[	chr3:183173405-183173659(+)$1	254	58	61	9.0000
bb!	chr17:27271434-27271656(-)$1	222	36	39	9.0000
7ff	chr12:93794303-93794542(+)$1	239	42	45	9.0000
gg2	chr10:74093457-74093738(-)$1	281	53	56	9.0000
ggg	chr11:117041286-117041555(+)$1	269	16	19	9.0000
GG{	chr2:71214959-71215208(-)$1	249	123	126	9.0000
===	chrX:153734669-153734998(-)$1	329	169	172	9.0000
fff	chr3:48199677-48199948(-)$1	271	23	26	9.0000
HLL	chr1:12268532-12268779(+)$1	247	9	12	9.0000
EEE	chr22:39917677-39917896(+)$1	219	0	3	9.0000
ggg	chr17:41845177-41845433(-)$1	256	9	12	9.0000
ddd	chr5:141380574-141380812(-)$1	238	100	103	9.0000
ddd	chr9:136230132-136230378(-)$1	246	141	144	9.0000
ff!	chr16:27472058-27472330(-)$1	272	11	14	9.0000
mcc	chr1:155868905-155869137(-)$1	232	25	28	9.0000
CCC	chr5:644348-644627(+)$1	279	22	25	9.0000
d]c	chr9:137329374-137329704(+)$1	330	39	42	9.0000
dd#	chr11:117039813-117040070(+)$1	257	56	59	9.0000
hhh	chr7:30120289-30120544(+)$1	255	11	14	9.0000
:cc	chr17:73885776-73886048(-)$1	272	24	27	9.0000
b22	chr6:3114318-3114568(+)$1	250	63	66	9.0000
DDD	chr5:159492233-159492502(+)$1	269	1	4	9.0000
ggg	chr12:49330753-49331013(-)$1	260	24	27	9.0000
ggg	chr17:56168131-56168385(+)$1	254	9	12	9.0000
sss	chr19:29104869-29105091(+)$1	222	69	72	9.0000
dmm	chr11:61634212-61634463(+)$1	251	51	54	9.0000
IKK	chr9:127282290-127282555(-)$1	265	19	22	9.0000
mmm	chr11:252723-253068(+)$1	345	35	38	9.0000
HHH	chr14:74184140-74184460(-)$1	320	116	119	9.0000
ee[	chr2:219460051-219460308(+)$1	257	4	7	9.0000

#DB
(((	chr16:23476821-23477064(-)$1	1	12	15	9.0000
(..	chr19:48960025-48960276(+)$1	1	30	33	9.0000
((.	chr3:15481494-15481763(+)$1	1	5	8	9.0000
.))	chr19:10501845-10502115(-)$1	1	79	82	9.0000
(((	chr4:106767741-106767973(+)$1	1	8	11	9.0000
((.	chr19:14588842-14589126(-)$1	1	21	24	9.0000
...	chr5:112354230-112354500(+)$1	1	74	77	9.0000
...	chr17:46199297-46199586(+)$1	1	66	69	9.0000
(..	chr11:118964688-118964924(-)$1	1	8	11	9.0000
)))	chr3:185361945-185362180(-)$1	1	51	54	9.0000
(..	chr16:23680746-23681008(+)$1	1	11	14	9.0000
..(	chr2:70903229-70903483(-)$1	1	76	79	9.0000
((.	chr1:179325950-179326196(+)$1	1	148	151	9.0000
((.	chr12:123254636-123254844(+)$1	1	56	59	9.0000
(..	chr8:101931447-101931719(-)$1	1	9	12	9.0000
.((	chr17:79878019-79878260(-)$1	1	86	89	9.0000
...	chr22:39428700-39429014(+)$1	1	0	3	9.0000
(((	chr9:111780634-111780863(-)$1	1	17	20	9.0000
(((	chr3:47628524-47628804(-)$1	1	5	8	9.0000
(((	chr2:206986809-206987131(-)$1	1	42	45	9.0000
((.	chr22:21352827-21353081(+)$1	1	35	38	9.0000
.))	chr1:9673853-9674148(+)$1	1	97	100	9.0000
.))	chr12:54745236-54745451(+)$1	1	80	83	9.0000
(.(	chr5:72205311-72205530(+)$1	1	83	86	9.0000
(((	chr17:35876436-35876676(-)$1	1	40	43	9.0000
...	chr2:220084036-220084272(-)$1	1	84	87	9.0000
)))	chr8:22478351-22478612(-)$1	1	124	127	9.0000
(((	chr1:202860891-202861118(-)$1	1	65	68	9.0000
((.	chr5:96110428-96110667(-)$1	1	32	35	9.0000
(((	chr6:41065952-41066271(+)$1	1	36	39	9.0000
...	chr14:100800599-100800836(-)$1	1	31	34	9.0000
(((	chr10:45952059-45952323(-)$1	1	160	163	9.0000
((.	chr2:99812155-99812372(+)$1	1	3	6	9.0000
)).	chr17:80349939-80350179(-)$1	1	21	24	9.0000
)))	chr12:53583515-53583787(+)$1	1	44	47	9.0000
...	chr2:85549635-85549876(-)$1	1	46	49	9.0000
.))	chr19:7536771-7537020(+)$1	1	104	107	9.0000
(((	chr19:6211364-6211641(-)$1	1	7	10	9.0000
.((	chr1:27662108-27662392(+)$1	1	8	11	9.0000
.((	chr2:277706-277957(+)$1	1	52	55	9.0000
)..	chr14:92628843-92629101(+)$1	1	54	57	9.0000
...	chr1:27731857-27732082(-)$1	1	8	11	9.0000
(((	chr7:75956827-75957061(-)$1	1	117	120	9.0000
(((	chr2:55776567-55776856(-)$1	1	122	125	9.0000
((.	chr1:87572460-87572682(+)$1	1	13	16	9.0000
.((	chr1:6682947-6683206(+)$1	1	48	51	9.0000
(((	chr19:13262233-13262457(+)$1	1	14	17	9.0000
(((	chr17:73059931-73060207(+)$1	1	25	28	9.0000
(..	chr9:136229693-136229946(-)$1	1	74	77	9.0000
...	chr5:150647443-150647703(+)$1	1	10	13	9.0000
(((	chr1:162497887-162498138(+)$1	1	1	4	9.0000
)))	chr3:15482050-15482297(+)$1	1	124	127	9.0000
)..	chr5:139947219-139947492(+)$1	1	163	166	9.0000
...	chr7:44748077-44748341(+)$1	1	27	30	9.0000
(((	chr1:146630238-146630480(-)$1	1	1	4	9.0000
(((	chr12:123254509-123254755(+)$1	1	3	6	9.0000
(..	chr10:35859122-35859353(+)$1	1	80	83	9.0000
(((	chr3:50367142-50367434(-)$1	1	10	13	9.0000
...	chr11:45954862-45955149(-)$1	1	128	131	9.0000
((.	chr6:34556474-34556708(-)$1	1	24	27	9.0000
((.	chr12:121158422-121158684(+)$1	1	33	36	9.0000
(.(	chr1:32660907-32661182(+)$1	1	137	140	9.0000
)))	chr19:48956789-48957055(+)$1	1	32	35	9.0000
(..	chr2:277802-278062(+)$1	1	40	43	9.0000
)).	chr16:30786107-30786405(+)$1	1	215	218	9.0000
(((	chr12:122627385-122627628(+)$1	1	136	139	9.0000
.((	chr19:10663685-10663941(+)$1	1	68	71	9.0000
(((	chr4:1717792-1718063(-)$1	1	17	20	9.0000
((.	chr3:183173405-183173659(+)$1	1	58	61	9.0000
((.	chr17:27271434-27271656(-)$1	1	36	39	9.0000
.))	chr12:93794303-93794542(+)$1	1	42	45	9.0000
)).	chr10:74093457-74093738(-)$1	1	53	56	9.0000
(((	chr11:117041286-117041555(+)$1	1	16	19	9.0000
((.	chr2:71214959-71215208(-)$1	1	123	126	9.0000
)))	chrX:153734669-153734998(-)$1	1	169	172	9.0000
(((	chr3:48199677-48199948(-)$1	1	23	26	9.0000
(..	chr1:12268532-12268779(+)$1	1	9	12	9.0000
(((	chr22:39917677-39917896(+)$1	1	0	3	9.0000
(((	chr17:41845177-41845433(-)$1	1	9	12	9.0000
(((	chr5:141380574-141380812(-)$1	1	100	103	9.0000
(((	chr9:136230132-136230378(-)$1	1	141	144	9.0000
((.	chr16:27472058-27472330(-)$1	1	11	14	9.0000
.))	chr1:155868905-155869137(-)$1	1	25	28	9.0000
(((	chr5:644348-644627(+)$1	1	22	25	9.0000
).)	chr9:137329374-137329704(+)$1	1	39	42	9.0000
((.	chr11:117039813-117040070(+)$1	1	56	59	9.0000
(((	chr7:30120289-30120544(+)$1	1	11	14	9.0000
.((	chr17:73885776-73886048(-)$1	1	24	27	9.0000
)..	chr6:3114318-3114568(+)$1	1	63	66	9.0000
(((	chr5:159492233-159492502(+)$1	1	1	4	9.0000
(((	chr12:49330753-49331013(-)$1	1	24	27	9.0000
(((	chr17:56168131-56168385(+)$1	1	9	12	9.0000
...	chr19:29104869-29105091(+)$1	1	69	72	9.0000
(..	chr11:61634212-61634463(+)$1	1	51	54	9.0000
(..	chr9:127282290-127282555(-)$1	1	19	22	9.0000
...	chr11:252723-253068(+)$1	1	35	38	9.0000
(((	chr14:74184140-74184460(-)$1	1	116	119	9.0000
((.	chr2:219460051-219460308(+)$1	1	4	7	9.0000

#PSSM
U : 0.89	u : 0.10	
G : 0.89	g : 0.10	
A : 0.89	a : 0.10	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_CDS_m2_run1.nuc.txt

#NT
ucucucuuucu	chr10:102283774-102284050(-)$1	276	64	75	25.4528
UCUCUCAUUCU	chr12:57113955-57114182(-)$1	227	102	113	21.3962
UCucccugucu	chr19:42401837-42402103(+)$1	266	31	42	17.9056
GCUCUCCUUCU	chr1:44442819-44443062(+)$1	243	145	156	17.5283
UCUGUCUUUCU	chr19:49840793-49841087(-)$1	294	49	60	21.7735
UCUCUCUUCCU	chr13:25008728-25008988(-)$1	260	25	36	21.1132
ucucuccuucc	chr5:176917484-176917744(-)$1	260	104	115	17.8113
UCUCUAUUUUU	chr1:44442979-44443300(+)$1	321	71	82	17.4339
UCUCUAUUUUU	chr3:48016829-48017117(-)$1	288	141	152	17.4339
uuucucuuucu	chr19:38948391-38948797(+)$1	406	87	98	22.3396
UCUCUCAUUCU	chr1:176137729-176138051(-)$1	322	128	139	21.3962
UAUAUCUUUCU	chr19:51323593-51323850(-)$1	257	10	21	17.9999
UCUGUCUUUCU	chr2:74599930-74600252(-)$1	322	111	122	21.7735
ucuugcuuucu	chr7:141464567-141464841(+)$1	274	131	142	17.3396
ucucucucucu	chr19:14274089-14274388(-)$1	299	79	90	21.8679
UCUCUCUGUCU	chr1:202543964-202544231(+)$1	267	118	129	21.8679
UCUCUGUGUCU	chr6:43151926-43152177(+)$1	251	30	41	17.9999
UGCCUCUUUCU	chr19:45911951-45912223(-)$1	272	119	130	17.1509
ccucucuuucu	chr19:57742855-57743216(+)$1	361	114	125	21.3018
ucucucucucu	chr16:47709342-47709603(+)$1	261	89	100	21.8679
uuucuuuuucu	chr6:32083600-32083965(-)$1	365	113	124	18.2830
ucucucugucu	chr19:47230735-47231015(-)$1	280	48	59	21.8679
CUUCUCUUUCU	chr9:111848180-111848508(-)$1	328	175	186	18.1886
UCUCUGUUACU	chr13:39586882-39587252(-)$1	370	184	195	17.2452
GCUCUUUUUCU	chr17:38209821-38210103(-)$1	282	81	92	17.2452
UAUCUCUUUCA	chr12:57114238-57114497(-)$1	259	10	21	17.5283
ucucucuuucu	chr9:114128795-114129031(-)$1	236	6	17	25.4528
UCucucuuucu	chr19:45912464-45912725(-)$1	261	209	220	25.4528
UCUCUCUUUCC	chr5:112227438-112227706(-)$1	268	153	164	21.5849
UCUAUCUUUCU	chr11:12283858-12284144(+)$1	286	125	136	21.6792
UCUCUCCCUCU	chr1:11888344-11888648(+)$1	304	140	151	18.0943
ucucucuuuuc	chr6:33179897-33180183(+)$1	286	138	149	17.6226
ucucuguuucu	chr19:42839817-42840204(+)$1	387	86	97	21.5849
UCUCCCUUACU	chr3:99569355-99569605(+)$1	250	79	90	17.1509
ucucuCCUUGU	chr19:42401903-42402191(+)$1	288	132	143	17.3396
UGUCUCUUCCU	chr6:33286459-33286761(-)$1	302	80	91	17.4339
UCUCUGGUUCU	chr17:7813591-7813856(+)$1	265	10	21	17.4339
ucccucucucu	chr19:49671012-49671313(+)$1	301	35	46	17.2452
ucucucuuucu	chr19:49838590-49838911(+)$1	321	109	120	25.4528
uuuuucuuucu	chr16:68324077-68324405(+)$1	328	61	72	18.5660
ucucucuuucc	chr5:112227540-112227837(-)$1	297	129	140	21.5849
UCUCUCUUUUG	chr2:27558094-27558368(-)$1	274	68	79	17.2452
CCUGUCUUUCU	chr5:141046107-141046470(-)$1	363	59	70	17.6226
UCUCCCCUUCU	chr20:35090780-35091072(+)$1	292	106	117	17.7169
UCUCUCUGUCU	chr11:85671684-85671975(-)$1	291	131	142	21.8679
UCUCUCUCUUU	chr9:95277187-95277464(+)$1	277	91	102	17.9056
guucucuuucu	chr1:149895803-149896065(-)$1	262	49	60	18.1886
UCUGCCUUUCU	chr3:10360836-10361087(-)$1	251	190	201	17.8113
uuuuucuuucu	chr2:99197909-99198154(+)$1	245	95	106	18.5660
ucucccuuucc	chr19:48700362-48700680(-)$1	318	183	194	17.6226
UCUCUCUUUCU	chr16:30733716-30734005(+)$1	289	139	150	25.4528
uuucucuuGCU	chr11:46686254-46686546(+)$1	292	130	141	17.9056

#otherMatches

#Struct PSSM
:::::::::::	chr16:74339386-74339694(-)$1	308	114	125	18.5660
>>>>>>eeeee	chr10:102283774-102284050(-)$1	276	64	75	25.4528
:::::::::::	chr12:57113955-57114182(-)$1	227	102	113	21.3962
:::::::::::	chr19:42401837-42402103(+)$1	266	31	42	17.9056
bbeeeee:GGG	chr1:44442819-44443062(+)$1	243	145	156	17.5283
b22ccc]ccc]	chr19:49840793-49841087(-)$1	294	49	60	21.7735
NNNNNFFFFFF	chr13:25008728-25008988(-)$1	260	25	36	21.1132
:::::::::::	chr5:176917484-176917744(-)$1	260	104	115	17.8113
e''''''''ee	chr1:44442979-44443300(+)$1	321	71	82	17.4339
EEEE:::::::	chr3:48016829-48017117(-)$1	288	141	152	17.4339
G::::::::::	chr19:38948391-38948797(+)$1	406	87	98	22.3396
:::::::::::	chr1:176137729-176138051(-)$1	322	128	139	21.3962
:::::::::::	chr19:51323593-51323850(-)$1	257	10	21	17.9999
GGEEEEELLLD	chr2:74599930-74600252(-)$1	322	111	122	21.7735
DDDcccsssss	chr7:141464567-141464841(+)$1	274	131	142	17.3396
^^^^^^^^^^^	chr19:14274089-14274388(-)$1	299	79	90	21.8679
DDDDeeeee[b	chr1:202543964-202544231(+)$1	267	118	129	21.8679
pppppccc666	chr6:43151926-43152177(+)$1	251	30	41	17.9999
#cccvvvvvvv	chr19:45911951-45912223(-)$1	272	119	130	17.1509
:::::::::::	chr19:57742855-57743216(+)$1	361	114	125	21.3018
:::::::::::	chr16:47709342-47709603(+)$1	261	89	100	21.8679
HRRRRRRRRRC	chr6:32083600-32083965(-)$1	365	113	124	18.2830
:::::cccqqq	chr19:47230735-47231015(-)$1	280	48	59	21.8679
iiiii!!bb##	chr9:111848180-111848508(-)$1	328	175	186	18.1886
\\\CCC:::::	chr13:39586882-39587252(-)$1	370	184	195	17.2452
dccc:::::::	chr17:38209821-38210103(-)$1	282	81	92	17.2452
:::::::::::	chr12:57114238-57114497(-)$1	259	10	21	17.5283
:::::::::::	chr9:114128795-114129031(-)$1	236	6	17	25.4528
:::::::::::	chr19:45912464-45912725(-)$1	261	209	220	25.4528
::::::::::h	chr5:112227438-112227706(-)$1	268	153	164	21.5849
:::::::::::	chr11:12283858-12284144(+)$1	286	125	136	21.6792
::::::CCCYY	chr1:11888344-11888648(+)$1	304	140	151	18.0943
!accc^^^^^^	chr6:33179897-33180183(+)$1	286	138	149	17.6226
:::::::::::	chr19:42839817-42840204(+)$1	387	86	97	21.5849
^^^^^^^^^cc	chr3:99569355-99569605(+)$1	250	79	90	17.1509
[avvvvvvvvv	chr19:42401903-42402191(+)$1	288	132	143	17.3396
:::::::::::	chr6:33286459-33286761(-)$1	302	80	91	17.4339
::::::DDDDL	chr17:7813591-7813856(+)$1	265	10	21	17.4339
[ccc&&&&&&&	chr19:49671012-49671313(+)$1	301	35	46	17.2452
===========	chr19:49838590-49838911(+)$1	321	109	120	25.4528
^^^^^^^^^^^	chr16:68324077-68324405(+)$1	328	61	72	18.5660
:::::::::::	chr5:112227540-112227837(-)$1	297	129	140	21.5849
bb]a55555ee	chr2:27558094-27558368(-)$1	274	68	79	17.2452
c]bb]======	chr5:141046107-141046470(-)$1	363	59	70	17.6226
{CCC{ADDDDN	chr20:35090780-35091072(+)$1	292	106	117	17.7169
:::::::FFFF	chr11:85671684-85671975(-)$1	291	131	142	21.8679
h22bb::::::	chr9:95277187-95277464(+)$1	277	91	102	17.9056
e88888888cc	chr1:149895803-149896065(-)$1	262	49	60	18.1886
DDDD}JJJJJJ	chr3:10360836-10361087(-)$1	251	190	201	17.8113
^^^^^^^^^^^	chr2:99197909-99198154(+)$1	245	95	106	18.5660
^^^^^^^^^^^	chr19:48700362-48700680(-)$1	318	183	194	17.6226
:::::::::::	chr16:30733716-30734005(+)$1	289	139	150	25.4528
::::::::bb!	chr11:46686254-46686546(+)$1	292	130	141	17.9056

#DB
...........	chr16:74339386-74339694(-)$1	1	114	125	18.5660
......)))))	chr10:102283774-102284050(-)$1	1	64	75	25.4528
...........	chr12:57113955-57114182(-)$1	1	102	113	21.3962
...........	chr19:42401837-42402103(+)$1	1	31	42	17.9056
))))))).)))	chr1:44442819-44443062(+)$1	1	145	156	17.5283
)..))).))).	chr19:49840793-49841087(-)$1	1	49	60	21.7735
.....((((((	chr13:25008728-25008988(-)$1	1	25	36	21.1132
...........	chr5:176917484-176917744(-)$1	1	104	115	17.8113
(........((	chr1:44442979-44443300(+)$1	1	71	82	17.4339
)))).......	chr3:48016829-48017117(-)$1	1	141	152	17.4339
)..........	chr19:38948391-38948797(+)$1	1	87	98	22.3396
...........	chr1:176137729-176138051(-)$1	1	128	139	21.3962
...........	chr19:51323593-51323850(-)$1	1	10	21	17.9999
(((((((...(	chr2:74599930-74600252(-)$1	1	111	122	21.7735
((((((.....	chr7:141464567-141464841(+)$1	1	131	142	17.3396
...........	chr19:14274089-14274388(-)$1	1	79	90	21.8679
(((((((((.(	chr1:202543964-202544231(+)$1	1	118	129	21.8679
.....)))...	chr6:43151926-43152177(+)$1	1	30	41	17.9999
.(((.......	chr19:45911951-45912223(-)$1	1	119	130	17.1509
...........	chr19:57742855-57743216(+)$1	1	114	125	21.3018
...........	chr16:47709342-47709603(+)$1	1	89	100	21.8679
(.........(	chr6:32083600-32083965(-)$1	1	113	124	18.2830
.....(((...	chr19:47230735-47231015(-)$1	1	48	59	21.8679
(((((..((..	chr9:111848180-111848508(-)$1	1	175	186	18.1886
...))).....	chr13:39586882-39587252(-)$1	1	184	195	17.2452
)))).......	chr17:38209821-38210103(-)$1	1	81	92	17.2452
...........	chr12:57114238-57114497(-)$1	1	10	21	17.5283
...........	chr9:114128795-114129031(-)$1	1	6	17	25.4528
...........	chr19:45912464-45912725(-)$1	1	209	220	25.4528
..........(	chr5:112227438-112227706(-)$1	1	153	164	21.5849
...........	chr11:12283858-12284144(+)$1	1	125	136	21.6792
......)))..	chr1:11888344-11888648(+)$1	1	140	151	18.0943
.((((......	chr6:33179897-33180183(+)$1	1	138	149	17.6226
...........	chr19:42839817-42840204(+)$1	1	86	97	21.5849
.........))	chr3:99569355-99569605(+)$1	1	79	90	17.1509
.(.........	chr19:42401903-42402191(+)$1	1	132	143	17.3396
...........	chr6:33286459-33286761(-)$1	1	80	91	17.4339
......((((.	chr17:7813591-7813856(+)$1	1	10	21	17.4339
.(((.......	chr19:49671012-49671313(+)$1	1	35	46	17.2452
)))))))))))	chr19:49838590-49838911(+)$1	1	109	120	25.4528
...........	chr16:68324077-68324405(+)$1	1	61	72	18.5660
...........	chr5:112227540-112227837(-)$1	1	129	140	21.5849
)).).....))	chr2:27558094-27558368(-)$1	1	68	79	17.2452
).)).))))))	chr5:141046107-141046470(-)$1	1	59	70	17.6226
.(((.(((((.	chr20:35090780-35091072(+)$1	1	106	117	17.7169
.......((((	chr11:85671684-85671975(-)$1	1	131	142	21.8679
)..))......	chr9:95277187-95277464(+)$1	1	91	102	17.9056
)........))	chr1:149895803-149896065(-)$1	1	49	60	18.1886
)))).))))))	chr3:10360836-10361087(-)$1	1	190	201	17.8113
...........	chr2:99197909-99198154(+)$1	1	95	106	18.5660
...........	chr19:48700362-48700680(-)$1	1	183	194	17.6226
...........	chr16:30733716-30734005(+)$1	1	139	150	25.4528
........((.	chr11:46686254-46686546(+)$1	1	130	141	17.9056

#PSSM
U : 0.50	u : 0.37	G : 0.03	C : 0.03	c : 0.01	g : 0.01	
C : 0.49	c : 0.28	u : 0.13	A : 0.03	G : 0.03	U : 0.01	
U : 0.52	u : 0.43	C : 0.01	c : 0.01	
C : 0.43	c : 0.37	G : 0.07	u : 0.05	A : 0.03	a : 0.01	
U : 0.49	u : 0.39	C : 0.05	c : 0.03	g : 0.01	
C : 0.45	c : 0.39	G : 0.05	A : 0.03	u : 0.01	U : 0.01	g : 0.01	
U : 0.43	u : 0.41	C : 0.07	A : 0.03	c : 0.01	G : 0.01	
U : 0.47	u : 0.33	c : 0.05	G : 0.05	g : 0.03	C : 0.03	
U : 0.49	u : 0.41	C : 0.03	A : 0.03	G : 0.01	
C : 0.49	c : 0.39	U : 0.07	u : 0.01	G : 0.01	
U : 0.52	u : 0.33	c : 0.07	A : 0.01	C : 0.01	G : 0.01	

#score	1041.264150943396
#seq	53
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_transcript_m1_run2.nuc.txt

#NT
UGGA	chr20:34248838-34249146(-)$1	308	156	160	11.9999
UGGA	chr4:87913819-87914096(+)$1	277	247	251	11.9999
UGGA	chr8:123852029-123852298(+)$1	269	83	87	11.9999
UGGA	chrX:131579527-131579865(-)$1	338	96	100	11.9999
UGGA	chr17:70577390-70577643(-)$1	253	37	41	11.9999
UGGA	chr6:7140986-7141233(+)$1	247	34	38	11.9999
UGGA	chr17:14212685-14213012(+)$1	327	112	116	11.9999
UGGA	chr9:71789396-71789657(+)$1	261	153	157	11.9999
UGGA	chr16:81506320-81506576(+)$1	256	5	9	11.9999
UGGA	chrX:132888968-132889203(-)$1	235	121	125	11.9999
UGGA	chr9:134283490-134283738(+)$1	248	159	163	11.9999
UGGA	chr20:39661330-39661639(+)$1	309	27	31	11.9999
UGGA	chr19:13233396-13233670(+)$1	274	129	133	11.9999
ugga	chr2:54688803-54689075(+)$1	272	143	147	11.9999
UGGA	chr2:241565789-241566165(+)$1	376	160	164	11.9999
UGGA	chr20:61557406-61557644(-)$1	238	146	150	11.9999
UGGA	chr17:75310998-75311276(+)$1	278	35	39	11.9999
UGGA	chr19:15429053-15429295(-)$1	242	54	58	11.9999
UGGA	chr4:2538954-2539215(+)$1	261	236	240	11.9999
UGGA	chr1:2183213-2183439(+)$1	226	157	161	11.9999
UGGA	chr2:32234307-32234568(-)$1	261	97	101	11.9999
UGGA	chr18:6364992-6365324(-)$1	332	116	120	11.9999
UGGA	chr7:139413554-139413821(-)$1	267	92	96	11.9999
UGGA	chr8:121633952-121634201(-)$1	249	129	133	11.9999
ugga	chr16:87878890-87879128(-)$1	238	3	7	11.9999
UGGA	chr18:46066469-46066690(+)$1	221	19	23	11.9999
UGGA	chr17:80190211-80190486(+)$1	275	105	109	11.9999
UGGA	chr17:53354887-53355169(+)$1	282	108	112	11.9999
UGGA	chr6:15249470-15249716(+)$1	246	72	76	11.9999
UGGA	chr7:22391175-22391485(-)$1	310	6	10	11.9999
UGGA	chr16:50632162-50632407(+)$1	245	30	34	11.9999
UGGA	chr1:156720699-156720975(-)$1	276	9	13	11.9999
UGGA	chr13:47141634-47141925(+)$1	291	50	54	11.9999
UGGA	chr14:105339927-105340169(+)$1	242	7	11	11.9999
UGGA	chr7:2085850-2086117(-)$1	267	53	57	11.9999
UGGA	chr17:70587413-70587678(-)$1	265	9	13	11.9999
UGGA	chr22:29342635-29342871(+)$1	236	0	4	11.9999
ugga	chr2:178114296-178114551(-)$1	255	150	154	11.9999
UGGA	chr11:68085228-68085511(+)$1	283	153	157	11.9999
UGGA	chr6:138865798-138866061(-)$1	263	202	206	11.9999
UGGA	chr11:63896287-63896571(-)$1	284	137	141	11.9999
UGGA	chr17:805722-806017(-)$1	295	50	54	11.9999
ugga	chr16:81513382-81513611(+)$1	229	151	155	11.9999
UGGA	chr10:34965399-34965707(-)$1	308	256	260	11.9999
UGGA	chr2:134951824-134952064(+)$1	240	194	198	11.9999
UGGA	chr20:32252005-32252230(-)$1	225	164	168	11.9999
UGGA	chr1:178722640-178722997(+)$1	357	179	183	11.9999
UGGA	chr16:8960776-8961020(-)$1	244	166	170	11.9999
UGGA	chr11:65194061-65194306(+)$1	245	0	4	11.9999
UGGA	chr9:137301336-137301571(+)$1	235	24	28	11.9999
UGGA	chr7:5459884-5460125(-)$1	241	236	240	11.9999
UGGA	chr11:70731959-70732221(-)$1	262	94	98	11.9999
UGGA	chr2:11450787-11451027(-)$1	240	56	60	11.9999
UGGA	chr21:44269593-44269862(-)$1	269	86	90	11.9999
UGGA	chr19:954031-954283(+)$1	252	208	212	11.9999
UGGA	chr16:21518750-21518982(-)$1	232	1	5	11.9999
UGGA	chr9:134282800-134283089(+)$1	289	86	90	11.9999
UGGA	chr4:1239850-1240099(-)$1	249	34	38	11.9999
UGGA	chr3:9447255-9447503(+)$1	248	184	188	11.9999
UGGA	chr17:55373052-55373318(+)$1	266	54	58	11.9999
UGGA	chr20:32590929-32591222(+)$1	293	70	74	11.9999
ugga	chr2:11479599-11479845(-)$1	246	141	145	11.9999
UGGA	chr17:1302468-1302723(-)$1	255	228	232	11.9999
ugga	chr6:1907772-1908112(-)$1	340	13	17	11.9999
ugga	chr4:152215617-152215876(-)$1	259	33	37	11.9999
UGGA	chr7:2672813-2673056(+)$1	243	46	50	11.9999
UGGA	chr10:77398316-77398572(+)$1	256	201	205	11.9999
UGGA	chr11:70926706-70926949(-)$1	243	216	220	11.9999
ugga	chr8:13053325-13053589(-)$1	264	51	55	11.9999
UGGA	chr1:2199833-2200097(+)$1	264	26	30	11.9999
UGGA	chr17:53349814-53350130(+)$1	316	169	173	11.9999
UGGA	chr2:75062506-75062765(+)$1	259	34	38	11.9999
ugga	chr2:9761576-9761934(-)$1	358	93	97	11.9999
UGGA	chr17:76404705-76404948(+)$1	243	124	128	11.9999
UGGA	chr19:15432750-15433034(-)$1	284	256	260	11.9999
UGGA	chr16:89477001-89477255(-)$1	254	157	161	11.9999
ugga	chr16:89476528-89476782(-)$1	254	239	243	11.9999
UGGA	chr16:89405770-89406118(-)$1	348	5	9	11.9999
UGGA	chr2:236442666-236442932(+)$1	266	17	21	11.9999

#otherMatches

#Struct PSSM
iiii	chr3:185514579-185514932(-)$1	353	32	36	11.9999
gggg	chr20:34248838-34249146(-)$1	308	156	160	11.9999
YDDD	chr4:87913819-87914096(+)$1	277	247	251	11.9999
b22g	chr8:123852029-123852298(+)$1	269	83	87	11.9999
ccc[	chrX:131579527-131579865(-)$1	338	96	100	11.9999
fff:	chr17:70577390-70577643(-)$1	253	37	41	11.9999
cddd	chr6:7140986-7141233(+)$1	247	34	38	11.9999
hhh[	chr17:14212685-14213012(+)$1	327	112	116	11.9999
ffff	chr9:71789396-71789657(+)$1	261	153	157	11.9999
DKKC	chr16:81506320-81506576(+)$1	256	5	9	11.9999
ddd[	chrX:132888968-132889203(-)$1	235	121	125	11.9999
[bb[	chr9:134283490-134283738(+)$1	248	159	163	11.9999
hhhh	chr20:39661330-39661639(+)$1	309	27	31	11.9999
((((	chr19:13233396-13233670(+)$1	274	129	133	11.9999
nfff	chr2:54688803-54689075(+)$1	272	143	147	11.9999
cc!!	chr2:241565789-241566165(+)$1	376	160	164	11.9999
ee""	chr20:61557406-61557644(-)$1	238	146	150	11.9999
b"""	chr17:75310998-75311276(+)$1	278	35	39	11.9999
bb22	chr19:15429053-15429295(-)$1	242	54	58	11.9999
dddd	chr4:2538954-2539215(+)$1	261	236	240	11.9999
ppff	chr1:2183213-2183439(+)$1	226	157	161	11.9999
JJNN	chr2:32234307-32234568(-)$1	261	97	101	11.9999
gggg	chr18:6364992-6365324(-)$1	332	116	120	11.9999
FFFF	chr7:139413554-139413821(-)$1	267	92	96	11.9999
eeee	chr8:121633952-121634201(-)$1	249	129	133	11.9999
hhhh	chr16:87878890-87879128(-)$1	238	3	7	11.9999
[eee	chr18:46066469-46066690(+)$1	221	19	23	11.9999
FF{A	chr17:80190211-80190486(+)$1	275	105	109	11.9999
%%%%	chr17:53354887-53355169(+)$1	282	108	112	11.9999
b[a!	chr6:15249470-15249716(+)$1	246	72	76	11.9999
HHHH	chr7:22391175-22391485(-)$1	310	6	10	11.9999
gggg	chr16:50632162-50632407(+)$1	245	30	34	11.9999
EEE{	chr1:156720699-156720975(-)$1	276	9	13	11.9999
LGGG	chr13:47141634-47141925(+)$1	291	50	54	11.9999
gg""	chr14:105339927-105340169(+)$1	242	7	11	11.9999
clll	chr7:2085850-2086117(-)$1	267	53	57	11.9999
{CCC	chr17:70587413-70587678(-)$1	265	9	13	11.9999
::::	chr22:29342635-29342871(+)$1	236	0	4	11.9999
hhhh	chr2:178114296-178114551(-)$1	255	150	154	11.9999
:::f	chr11:68085228-68085511(+)$1	283	153	157	11.9999
''dd	chr6:138865798-138866061(-)$1	263	202	206	11.9999
dd::	chr11:63896287-63896571(-)$1	284	137	141	11.9999
ee::	chr17:805722-806017(-)$1	295	50	54	11.9999
]ccc	chr16:81513382-81513611(+)$1	229	151	155	11.9999
[bb!	chr10:34965399-34965707(-)$1	308	256	260	11.9999
eeqq	chr2:134951824-134952064(+)$1	240	194	198	11.9999
d]a:	chr20:32252005-32252230(-)$1	225	164	168	11.9999
occc	chr1:178722640-178722997(+)$1	357	179	183	11.9999
ssss	chr16:8960776-8961020(-)$1	244	166	170	11.9999
CCCK	chr11:65194061-65194306(+)$1	245	0	4	11.9999
:ddd	chr9:137301336-137301571(+)$1	235	24	28	11.9999
e:::	chr7:5459884-5460125(-)$1	241	236	240	11.9999
3eee	chr11:70731959-70732221(-)$1	262	94	98	11.9999
444c	chr2:11450787-11451027(-)$1	240	56	60	11.9999
hhhh	chr21:44269593-44269862(-)$1	269	86	90	11.9999
!ddd	chr19:954031-954283(+)$1	252	208	212	11.9999
:A{A	chr16:21518750-21518982(-)$1	232	1	5	11.9999
HHHH	chr9:134282800-134283089(+)$1	289	86	90	11.9999
FFFd	chr4:1239850-1240099(-)$1	249	34	38	11.9999
CCC:	chr3:9447255-9447503(+)$1	248	184	188	11.9999
gggg	chr17:55373052-55373318(+)$1	266	54	58	11.9999
errr	chr20:32590929-32591222(+)$1	293	70	74	11.9999
ffff	chr2:11479599-11479845(-)$1	246	141	145	11.9999
}CCC	chr17:1302468-1302723(-)$1	255	228	232	11.9999
cccq	chr6:1907772-1908112(-)$1	340	13	17	11.9999
DDDD	chr4:152215617-152215876(-)$1	259	33	37	11.9999
fff:	chr7:2672813-2673056(+)$1	243	46	50	11.9999
d666	chr10:77398316-77398572(+)$1	256	201	205	11.9999
::ff	chr11:70926706-70926949(-)$1	243	216	220	11.9999
::::	chr8:13053325-13053589(-)$1	264	51	55	11.9999
KEEE	chr1:2199833-2200097(+)$1	264	26	30	11.9999
gggg	chr17:53349814-53350130(+)$1	316	169	173	11.9999
cddd	chr2:75062506-75062765(+)$1	259	34	38	11.9999
ff[a	chr2:9761576-9761934(-)$1	358	93	97	11.9999
oooo	chr17:76404705-76404948(+)$1	243	124	128	11.9999
eeee	chr19:15432750-15433034(-)$1	284	256	260	11.9999
ffff	chr16:89477001-89477255(-)$1	254	157	161	11.9999
4iii	chr16:89476528-89476782(-)$1	254	239	243	11.9999
:EEE	chr16:89405770-89406118(-)$1	348	5	9	11.9999
DDDK	chr2:236442666-236442932(+)$1	266	17	21	11.9999

#DB
((((	chr3:185514579-185514932(-)$1	1	32	36	11.9999
((((	chr20:34248838-34249146(-)$1	1	156	160	11.9999
.)))	chr4:87913819-87914096(+)$1	1	247	251	11.9999
)..)	chr8:123852029-123852298(+)$1	1	83	87	11.9999
(((.	chrX:131579527-131579865(-)$1	1	96	100	11.9999
))).	chr17:70577390-70577643(-)$1	1	37	41	11.9999
)(((	chr6:7140986-7141233(+)$1	1	34	38	11.9999
(((.	chr17:14212685-14213012(+)$1	1	112	116	11.9999
))))	chr9:71789396-71789657(+)$1	1	153	157	11.9999
(..(	chr16:81506320-81506576(+)$1	1	5	9	11.9999
(((.	chrX:132888968-132889203(-)$1	1	121	125	11.9999
.((.	chr9:134283490-134283738(+)$1	1	159	163	11.9999
))))	chr20:39661330-39661639(+)$1	1	27	31	11.9999
....	chr19:13233396-13233670(+)$1	1	129	133	11.9999
.)))	chr2:54688803-54689075(+)$1	1	143	147	11.9999
((..	chr2:241565789-241566165(+)$1	1	160	164	11.9999
((..	chr20:61557406-61557644(-)$1	1	146	150	11.9999
(...	chr17:75310998-75311276(+)$1	1	35	39	11.9999
))..	chr19:15429053-15429295(-)$1	1	54	58	11.9999
))))	chr4:2538954-2539215(+)$1	1	236	240	11.9999
..))	chr1:2183213-2183439(+)$1	1	157	161	11.9999
((..	chr2:32234307-32234568(-)$1	1	97	101	11.9999
))))	chr18:6364992-6365324(-)$1	1	116	120	11.9999
))))	chr7:139413554-139413821(-)$1	1	92	96	11.9999
((((	chr8:121633952-121634201(-)$1	1	129	133	11.9999
((((	chr16:87878890-87879128(-)$1	1	3	7	11.9999
.(((	chr18:46066469-46066690(+)$1	1	19	23	11.9999
((.(	chr17:80190211-80190486(+)$1	1	105	109	11.9999
....	chr17:53354887-53355169(+)$1	1	108	112	11.9999
(.(.	chr6:15249470-15249716(+)$1	1	72	76	11.9999
((((	chr7:22391175-22391485(-)$1	1	6	10	11.9999
((((	chr16:50632162-50632407(+)$1	1	30	34	11.9999
(((.	chr1:156720699-156720975(-)$1	1	9	13	11.9999
.(((	chr13:47141634-47141925(+)$1	1	50	54	11.9999
((..	chr14:105339927-105340169(+)$1	1	7	11	11.9999
(...	chr7:2085850-2086117(-)$1	1	53	57	11.9999
.(((	chr17:70587413-70587678(-)$1	1	9	13	11.9999
....	chr22:29342635-29342871(+)$1	1	0	4	11.9999
((((	chr2:178114296-178114551(-)$1	1	150	154	11.9999
...(	chr11:68085228-68085511(+)$1	1	153	157	11.9999
..((	chr6:138865798-138866061(-)$1	1	202	206	11.9999
))..	chr11:63896287-63896571(-)$1	1	137	141	11.9999
))..	chr17:805722-806017(-)$1	1	50	54	11.9999
.)))	chr16:81513382-81513611(+)$1	1	151	155	11.9999
.((.	chr10:34965399-34965707(-)$1	1	256	260	11.9999
((..	chr2:134951824-134952064(+)$1	1	194	198	11.9999
).).	chr20:32252005-32252230(-)$1	1	164	168	11.9999
.)))	chr1:178722640-178722997(+)$1	1	179	183	11.9999
....	chr16:8960776-8961020(-)$1	1	166	170	11.9999
(((.	chr11:65194061-65194306(+)$1	1	0	4	11.9999
.(((	chr9:137301336-137301571(+)$1	1	24	28	11.9999
)...	chr7:5459884-5460125(-)$1	1	236	240	11.9999
.)))	chr11:70731959-70732221(-)$1	1	94	98	11.9999
...)	chr2:11450787-11451027(-)$1	1	56	60	11.9999
((((	chr21:44269593-44269862(-)$1	1	86	90	11.9999
.(((	chr19:954031-954283(+)$1	1	208	212	11.9999
.(.(	chr16:21518750-21518982(-)$1	1	1	5	11.9999
((((	chr9:134282800-134283089(+)$1	1	86	90	11.9999
((((	chr4:1239850-1240099(-)$1	1	34	38	11.9999
))).	chr3:9447255-9447503(+)$1	1	184	188	11.9999
))))	chr17:55373052-55373318(+)$1	1	54	58	11.9999
(...	chr20:32590929-32591222(+)$1	1	70	74	11.9999
))))	chr2:11479599-11479845(-)$1	1	141	145	11.9999
.)))	chr17:1302468-1302723(-)$1	1	228	232	11.9999
(((.	chr6:1907772-1908112(-)$1	1	13	17	11.9999
((((	chr4:152215617-152215876(-)$1	1	33	37	11.9999
))).	chr7:2672813-2673056(+)$1	1	46	50	11.9999
)...	chr10:77398316-77398572(+)$1	1	201	205	11.9999
..((	chr11:70926706-70926949(-)$1	1	216	220	11.9999
....	chr8:13053325-13053589(-)$1	1	51	55	11.9999
.(((	chr1:2199833-2200097(+)$1	1	26	30	11.9999
((((	chr17:53349814-53350130(+)$1	1	169	173	11.9999
)(((	chr2:75062506-75062765(+)$1	1	34	38	11.9999
((.(	chr2:9761576-9761934(-)$1	1	93	97	11.9999
....	chr17:76404705-76404948(+)$1	1	124	128	11.9999
((((	chr19:15432750-15433034(-)$1	1	256	260	11.9999
((((	chr16:89477001-89477255(-)$1	1	157	161	11.9999
.)))	chr16:89476528-89476782(-)$1	1	239	243	11.9999
.(((	chr16:89405770-89406118(-)$1	1	5	9	11.9999
(((.	chr2:236442666-236442932(+)$1	1	17	21	11.9999

#PSSM
U : 0.87	u : 0.12	
G : 0.87	g : 0.12	
G : 0.87	g : 0.12	
A : 0.87	a : 0.12	

#score	959.9999999999998
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_transcript_m3_run1.nuc.txt

#NT
UGGG	chr11:65211550-65211764(+)$1	214	66	70	11.9999
UGGG	chr16:89555642-89555914(-)$1	272	3	7	11.9999
UGGG	chr17:75430347-75430594(+)$1	247	114	118	11.9999
UGGG	chr6:64282726-64283006(+)$1	280	19	23	11.9999
UGGG	chr17:70556493-70556743(-)$1	250	4	8	11.9999
UGGG	chr11:66395190-66395433(+)$1	243	0	4	11.9999
UGGG	chr22:47207292-47207568(+)$1	276	29	33	11.9999
UGGG	chr13:113881274-113881573(+)$1	299	38	42	11.9999
UGGG	chr11:2158447-2158681(-)$1	234	6	10	11.9999
UGGG	chr16:87887526-87887770(-)$1	244	33	37	11.9999
uggg	chr2:3308004-3308274(-)$1	270	6	10	11.9999
UGGG	chr20:60627645-60627867(-)$1	222	86	90	11.9999
uggg	chr19:878814-879096(-)$1	282	5	9	11.9999
UGGG	chr8:22246018-22246237(+)$1	219	25	29	11.9999
UGGG	chr17:55625950-55626202(+)$1	252	17	21	11.9999
UGGG	chr8:97506952-97507178(+)$1	226	94	98	11.9999
UGGG	chr16:8958688-8958932(-)$1	244	71	75	11.9999
UGGG	chr20:31048542-31048884(-)$1	342	44	48	11.9999
UGGG	chr21:47562996-47563254(-)$1	258	109	113	11.9999
UGGG	chr17:80190707-80190978(+)$1	271	15	19	11.9999
UGGG	chr10:128612907-128613229(+)$1	322	21	25	11.9999
UGGG	chr8:144677791-144678029(-)$1	238	30	34	11.9999
uggg	chr11:63865661-63865914(-)$1	253	12	16	11.9999
UGGG	chr8:144677867-144678087(-)$1	220	88	92	11.9999
uggg	chr10:80856649-80856934(+)$1	285	11	15	11.9999
UGGG	chr11:65197395-65197612(+)$1	217	54	58	11.9999
UGGG	chr17:70563241-70563501(-)$1	260	16	20	11.9999
UGGG	chr11:65194296-65194537(+)$1	241	116	120	11.9999
UGGG	chr11:65203055-65203271(+)$1	216	89	93	11.9999
UGGG	chr3:13063204-13063489(-)$1	285	1	5	11.9999
UGGG	chr4:1238978-1239272(-)$1	294	114	118	11.9999
UGGG	chr17:59474098-59474349(-)$1	251	13	17	11.9999
UGGG	chr17:79962621-79962912(+)$1	291	50	54	11.9999
UGGG	chr16:50657664-50657941(+)$1	277	233	237	11.9999
UGGG	chr8:128851940-128852229(+)$1	289	105	109	11.9999
Uggg	chr20:17661918-17662174(-)$1	256	30	34	11.9999
UGGG	chr11:65195312-65195536(+)$1	224	74	78	11.9999
UGGG	chr21:46847613-46847912(+)$1	299	5	9	11.9999
uggg	chr16:75280523-75280757(-)$1	234	3	7	11.9999
UGGG	chr11:65211546-65211750(+)$1	204	70	74	11.9999
UGGG	chr16:87890470-87890725(-)$1	255	16	20	11.9999
UGGG	chr17:55397726-55397976(+)$1	250	104	108	11.9999
UGGG	chr17:75428644-75428897(+)$1	253	82	86	11.9999
UGGG	chr11:65211752-65211985(+)$1	233	64	68	11.9999
UGGG	chr8:17658249-17658521(-)$1	272	74	78	11.9999
UGGG	chr11:65190342-65190558(+)$1	216	48	52	11.9999
uggg	chr11:70910974-70911233(-)$1	259	51	55	11.9999
UGGG	chr13:113351251-113351536(+)$1	285	21	25	11.9999
UGGG	chr11:65193719-65193971(+)$1	252	45	49	11.9999
UGGG	chr16:594028-594282(+)$1	254	207	211	11.9999
UGGG	chr9:137250992-137251251(+)$1	259	6	10	11.9999
UGGG	chr17:63555178-63555487(-)$1	309	18	22	11.9999
uggg	chr2:10335641-10335889(+)$1	248	35	39	11.9999
UGGG	chr3:9861863-9862163(+)$1	300	17	21	11.9999
UGGG	chr11:65190365-65190578(+)$1	213	25	29	11.9999
uggg	chr7:128217704-128218017(+)$1	313	19	23	11.9999
UGGG	chr2:242661348-242661618(+)$1	270	13	17	11.9999
UGGG	chr1:1192721-1192968(-)$1	247	13	17	11.9999
UGGG	chr11:65193461-65193693(+)$1	232	51	55	11.9999
UGGG	chr17:70484128-70484388(-)$1	260	19	23	11.9999
UGGG	chr8:142422424-142422678(+)$1	254	24	28	11.9999
UGGG	chr14:103567920-103568199(+)$1	279	68	72	11.9999
UGGG	chr5:138629682-138629995(+)$1	313	96	100	11.9999
UGGG	chr11:65190633-65190854(+)$1	221	58	62	11.9999
UGGG	chr4:1238110-1238370(-)$1	260	8	12	11.9999
UGGG	chr10:121340945-121341210(-)$1	265	190	194	11.9999
UGGG	chr3:152026726-152026999(+)$1	273	249	253	11.9999
UGGG	chr11:65203118-65203407(+)$1	289	26	30	11.9999
uggg	chr17:34171612-34171914(+)$1	302	16	20	11.9999
UGGG	chr6:2245212-2245484(-)$1	272	3	7	11.9999
UGGG	chr6:64283150-64283451(+)$1	301	56	60	11.9999
UGGG	chr11:65194641-65194863(+)$1	222	37	41	11.9999
uggg	chr16:50631114-50631354(+)$1	240	30	34	11.9999
UGGG	chr7:131012963-131013205(+)$1	242	69	73	11.9999
UGGG	chr20:57467353-57467621(+)$1	268	25	29	11.9999
UGGG	chr9:136693969-136694234(-)$1	265	2	6	11.9999
UGGG	chr2:240315122-240315375(-)$1	253	69	73	11.9999
UGGG	chr7:47498254-47498507(-)$1	253	176	180	11.9999
UGGG	chr2:129041722-129041965(-)$1	243	17	21	11.9999
uggg	chr16:50656984-50657212(+)$1	228	105	109	11.9999
UGGG	chr2:129068336-129068582(-)$1	246	36	40	11.9999
UGGG	chr11:65195286-65195512(+)$1	226	100	104	11.9999
UGGG	chr9:137245938-137246205(+)$1	267	38	42	11.9999
UGGG	chr17:77964151-77964411(-)$1	260	73	77	11.9999
UGGG	chr11:120089753-120089996(+)$1	243	45	49	11.9999
UGGG	chr11:65194249-65194474(+)$1	225	18	22	11.9999
UGGG	chr16:50637930-50638155(+)$1	225	63	67	11.9999
UGGG	chr10:77493015-77493288(+)$1	273	86	90	11.9999
UGGG	chr9:136751653-136751938(-)$1	285	66	70	11.9999
uggg	chr16:50632806-50633073(+)$1	267	0	4	11.9999
UGGG	chr14:105339550-105339839(+)$1	289	7	11	11.9999
UGGG	chr9:136758125-136758403(-)$1	278	22	26	11.9999

#otherMatches

#Struct PSSM
ddoo	chr16:20686594-20686902(+)$1	308	43	47	11.9999
RRFF	chr11:65211550-65211764(+)$1	214	66	70	11.9999
dd[b	chr16:89555642-89555914(-)$1	272	3	7	11.9999
CEEE	chr17:75430347-75430594(+)$1	247	114	118	11.9999
]bbh	chr6:64282726-64283006(+)$1	280	19	23	11.9999
c[cc	chr17:70556493-70556743(-)$1	250	4	8	11.9999
::DD	chr11:66395190-66395433(+)$1	243	0	4	11.9999
====	chr22:47207292-47207568(+)$1	276	29	33	11.9999
ffff	chr13:113881274-113881573(+)$1	299	38	42	11.9999
nncc	chr11:2158447-2158681(-)$1	234	6	10	11.9999
e22d	chr16:87887526-87887770(-)$1	244	33	37	11.9999
a[bb	chr2:3308004-3308274(-)$1	270	6	10	11.9999
c[a[	chr20:60627645-60627867(-)$1	222	86	90	11.9999
B:::	chr19:878814-879096(-)$1	282	5	9	11.9999
::::	chr8:22246018-22246237(+)$1	219	25	29	11.9999
!ddd	chr17:55625950-55626202(+)$1	252	17	21	11.9999
]ddd	chr8:97506952-97507178(+)$1	226	94	98	11.9999
ooee	chr16:8958688-8958932(-)$1	244	71	75	11.9999
::::	chr20:31048542-31048884(-)$1	342	44	48	11.9999
hccc	chr21:47562996-47563254(-)$1	258	109	113	11.9999
hhhh	chr17:80190707-80190978(+)$1	271	15	19	11.9999
dnnn	chr10:128612907-128613229(+)$1	322	21	25	11.9999
::::	chr8:144677791-144678029(-)$1	238	30	34	11.9999
ccpp	chr11:63865661-63865914(-)$1	253	12	16	11.9999
3ddd	chr8:144677867-144678087(-)$1	220	88	92	11.9999
GGGG	chr10:80856649-80856934(+)$1	285	11	15	11.9999
fccc	chr11:65197395-65197612(+)$1	217	54	58	11.9999
dd[c	chr17:70563241-70563501(-)$1	260	16	20	11.9999
llle	chr11:65194296-65194537(+)$1	241	116	120	11.9999
fffd	chr11:65203055-65203271(+)$1	216	89	93	11.9999
gggg	chr3:13063204-13063489(-)$1	285	1	5	11.9999
HHHH	chr4:1238978-1239272(-)$1	294	114	118	11.9999
eeee	chr17:59474098-59474349(-)$1	251	13	17	11.9999
====	chr17:79962621-79962912(+)$1	291	50	54	11.9999
444g	chr16:50657664-50657941(+)$1	277	233	237	11.9999
EEE{	chr8:128851940-128852229(+)$1	289	105	109	11.9999
FFF{	chr20:17661918-17662174(-)$1	256	30	34	11.9999
KBBH	chr11:65195312-65195536(+)$1	224	74	78	11.9999
eeer	chr21:46847613-46847912(+)$1	299	5	9	11.9999
ffff	chr16:75280523-75280757(-)$1	234	3	7	11.9999
RRFF	chr11:65211546-65211750(+)$1	204	70	74	11.9999
ffff	chr16:87890470-87890725(-)$1	255	16	20	11.9999
mmmm	chr17:55397726-55397976(+)$1	250	104	108	11.9999
dddd	chr17:75428644-75428897(+)$1	253	82	86	11.9999
OIII	chr11:65211752-65211985(+)$1	233	64	68	11.9999
IIII	chr8:17658249-17658521(-)$1	272	74	78	11.9999
HHHH	chr11:65190342-65190558(+)$1	216	48	52	11.9999
tttt	chr11:70910974-70911233(-)$1	259	51	55	11.9999
EEEE	chr13:113351251-113351536(+)$1	285	21	25	11.9999
###b	chr11:65193719-65193971(+)$1	252	45	49	11.9999
4ddd	chr16:594028-594282(+)$1	254	207	211	11.9999
GGGG	chr9:137250992-137251251(+)$1	259	6	10	11.9999
b###	chr17:63555178-63555487(-)$1	309	18	22	11.9999
eeee	chr2:10335641-10335889(+)$1	248	35	39	11.9999
CCFF	chr3:9861863-9862163(+)$1	300	17	21	11.9999
HHHH	chr11:65190365-65190578(+)$1	213	25	29	11.9999
nnnb	chr7:128217704-128218017(+)$1	313	19	23	11.9999
mccc	chr2:242661348-242661618(+)$1	270	13	17	11.9999
bb##	chr1:1192721-1192968(-)$1	247	13	17	11.9999
HHHH	chr11:65193461-65193693(+)$1	232	51	55	11.9999
eeem	chr17:70484128-70484388(-)$1	260	19	23	11.9999
dddd	chr8:142422424-142422678(+)$1	254	24	28	11.9999
eeee	chr14:103567920-103568199(+)$1	279	68	72	11.9999
eee[	chr5:138629682-138629995(+)$1	313	96	100	11.9999
5555	chr11:65190633-65190854(+)$1	221	58	62	11.9999
[eee	chr4:1238110-1238370(-)$1	260	8	12	11.9999
:::d	chr10:121340945-121341210(-)$1	265	190	194	11.9999
::::	chr3:152026726-152026999(+)$1	273	249	253	11.9999
KCCC	chr11:65203118-65203407(+)$1	289	26	30	11.9999
::::	chr17:34171612-34171914(+)$1	302	16	20	11.9999
:HHH	chr6:2245212-2245484(-)$1	272	3	7	11.9999
dddd	chr6:64283150-64283451(+)$1	301	56	60	11.9999
mmee	chr11:65194641-65194863(+)$1	222	37	41	11.9999
EKKF	chr16:50631114-50631354(+)$1	240	30	34	11.9999
f]dd	chr7:131012963-131013205(+)$1	242	69	73	11.9999
%%%%	chr20:57467353-57467621(+)$1	268	25	29	11.9999
c!!f	chr9:136693969-136694234(-)$1	265	2	6	11.9999
ddd[	chr2:240315122-240315375(-)$1	253	69	73	11.9999
ffee	chr7:47498254-47498507(-)$1	253	176	180	11.9999
BB{C	chr2:129041722-129041965(-)$1	243	17	21	11.9999
====	chr16:50656984-50657212(+)$1	228	105	109	11.9999
:ggg	chr2:129068336-129068582(-)$1	246	36	40	11.9999
:::H	chr11:65195286-65195512(+)$1	226	100	104	11.9999
]ccc	chr9:137245938-137246205(+)$1	267	38	42	11.9999
eeee	chr17:77964151-77964411(-)$1	260	73	77	11.9999
pfff	chr11:120089753-120089996(+)$1	243	45	49	11.9999
c22a	chr11:65194249-65194474(+)$1	225	18	22	11.9999
f]bb	chr16:50637930-50638155(+)$1	225	63	67	11.9999
:ccc	chr10:77493015-77493288(+)$1	273	86	90	11.9999
]fff	chr9:136751653-136751938(-)$1	285	66	70	11.9999
:EEE	chr16:50632806-50633073(+)$1	267	0	4	11.9999
b[gg	chr14:105339550-105339839(+)$1	289	7	11	11.9999
!ccc	chr9:136758125-136758403(-)$1	278	22	26	11.9999

#DB
((..	chr16:20686594-20686902(+)$1	1	43	47	11.9999
..((	chr11:65211550-65211764(+)$1	1	66	70	11.9999
((.(	chr16:89555642-89555914(-)$1	1	3	7	11.9999
))))	chr17:75430347-75430594(+)$1	1	114	118	11.9999
.))(	chr6:64282726-64283006(+)$1	1	19	23	11.9999
(.((	chr17:70556493-70556743(-)$1	1	4	8	11.9999
..((	chr11:66395190-66395433(+)$1	1	0	4	11.9999
((((	chr22:47207292-47207568(+)$1	1	29	33	11.9999
))))	chr13:113881274-113881573(+)$1	1	38	42	11.9999
..))	chr11:2158447-2158681(-)$1	1	6	10	11.9999
)..)	chr16:87887526-87887770(-)$1	1	33	37	11.9999
(.((	chr2:3308004-3308274(-)$1	1	6	10	11.9999
(.(.	chr20:60627645-60627867(-)$1	1	86	90	11.9999
(...	chr19:878814-879096(-)$1	1	5	9	11.9999
....	chr8:22246018-22246237(+)$1	1	25	29	11.9999
.(((	chr17:55625950-55626202(+)$1	1	17	21	11.9999
.)))	chr8:97506952-97507178(+)$1	1	94	98	11.9999
..))	chr16:8958688-8958932(-)$1	1	71	75	11.9999
....	chr20:31048542-31048884(-)$1	1	44	48	11.9999
)(((	chr21:47562996-47563254(-)$1	1	109	113	11.9999
((((	chr17:80190707-80190978(+)$1	1	15	19	11.9999
(...	chr10:128612907-128613229(+)$1	1	21	25	11.9999
....	chr8:144677791-144678029(-)$1	1	30	34	11.9999
((..	chr11:63865661-63865914(-)$1	1	12	16	11.9999
.)))	chr8:144677867-144678087(-)$1	1	88	92	11.9999
((((	chr10:80856649-80856934(+)$1	1	11	15	11.9999
)(((	chr11:65197395-65197612(+)$1	1	54	58	11.9999
((.(	chr17:70563241-70563501(-)$1	1	16	20	11.9999
...)	chr11:65194296-65194537(+)$1	1	116	120	11.9999
))))	chr11:65203055-65203271(+)$1	1	89	93	11.9999
((((	chr3:13063204-13063489(-)$1	1	1	5	11.9999
((((	chr4:1238978-1239272(-)$1	1	114	118	11.9999
((((	chr17:59474098-59474349(-)$1	1	13	17	11.9999
((((	chr17:79962621-79962912(+)$1	1	50	54	11.9999
...)	chr16:50657664-50657941(+)$1	1	233	237	11.9999
(((.	chr8:128851940-128852229(+)$1	1	105	109	11.9999
(((.	chr20:17661918-17662174(-)$1	1	30	34	11.9999
.(((	chr11:65195312-65195536(+)$1	1	74	78	11.9999
(((.	chr21:46847613-46847912(+)$1	1	5	9	11.9999
((((	chr16:75280523-75280757(-)$1	1	3	7	11.9999
..((	chr11:65211546-65211750(+)$1	1	70	74	11.9999
((((	chr16:87890470-87890725(-)$1	1	16	20	11.9999
....	chr17:55397726-55397976(+)$1	1	104	108	11.9999
))))	chr17:75428644-75428897(+)$1	1	82	86	11.9999
.(((	chr11:65211752-65211985(+)$1	1	64	68	11.9999
((((	chr8:17658249-17658521(-)$1	1	74	78	11.9999
((((	chr11:65190342-65190558(+)$1	1	48	52	11.9999
....	chr11:70910974-70911233(-)$1	1	51	55	11.9999
((((	chr13:113351251-113351536(+)$1	1	21	25	11.9999
...(	chr11:65193719-65193971(+)$1	1	45	49	11.9999
.)))	chr16:594028-594282(+)$1	1	207	211	11.9999
((((	chr9:137250992-137251251(+)$1	1	6	10	11.9999
(...	chr17:63555178-63555487(-)$1	1	18	22	11.9999
((((	chr2:10335641-10335889(+)$1	1	35	39	11.9999
((((	chr3:9861863-9862163(+)$1	1	17	21	11.9999
((((	chr11:65190365-65190578(+)$1	1	25	29	11.9999
...)	chr7:128217704-128218017(+)$1	1	19	23	11.9999
.)))	chr2:242661348-242661618(+)$1	1	13	17	11.9999
((..	chr1:1192721-1192968(-)$1	1	13	17	11.9999
((((	chr11:65193461-65193693(+)$1	1	51	55	11.9999
(((.	chr17:70484128-70484388(-)$1	1	19	23	11.9999
))))	chr8:142422424-142422678(+)$1	1	24	28	11.9999
))))	chr14:103567920-103568199(+)$1	1	68	72	11.9999
(((.	chr5:138629682-138629995(+)$1	1	96	100	11.9999
....	chr11:65190633-65190854(+)$1	1	58	62	11.9999
.(((	chr4:1238110-1238370(-)$1	1	8	12	11.9999
...(	chr10:121340945-121341210(-)$1	1	190	194	11.9999
....	chr3:152026726-152026999(+)$1	1	249	253	11.9999
.(((	chr11:65203118-65203407(+)$1	1	26	30	11.9999
....	chr17:34171612-34171914(+)$1	1	16	20	11.9999
.(((	chr6:2245212-2245484(-)$1	1	3	7	11.9999
((((	chr6:64283150-64283451(+)$1	1	56	60	11.9999
..))	chr11:65194641-65194863(+)$1	1	37	41	11.9999
(..(	chr16:50631114-50631354(+)$1	1	30	34	11.9999
).))	chr7:131012963-131013205(+)$1	1	69	73	11.9999
....	chr20:57467353-57467621(+)$1	1	25	29	11.9999
(..(	chr9:136693969-136694234(-)$1	1	2	6	11.9999
(((.	chr2:240315122-240315375(-)$1	1	69	73	11.9999
))))	chr7:47498254-47498507(-)$1	1	176	180	11.9999
((.(	chr2:129041722-129041965(-)$1	1	17	21	11.9999
((((	chr16:50656984-50657212(+)$1	1	105	109	11.9999
.(((	chr2:129068336-129068582(-)$1	1	36	40	11.9999
...(	chr11:65195286-65195512(+)$1	1	100	104	11.9999
.)))	chr9:137245938-137246205(+)$1	1	38	42	11.9999
((((	chr17:77964151-77964411(-)$1	1	73	77	11.9999
.)))	chr11:120089753-120089996(+)$1	1	45	49	11.9999
)..)	chr11:65194249-65194474(+)$1	1	18	22	11.9999
).))	chr16:50637930-50638155(+)$1	1	63	67	11.9999
.(((	chr10:77493015-77493288(+)$1	1	86	90	11.9999
.)))	chr9:136751653-136751938(-)$1	1	66	70	11.9999
.(((	chr16:50632806-50633073(+)$1	1	0	4	11.9999
(.((	chr14:105339550-105339839(+)$1	1	7	11	11.9999
.(((	chr9:136758125-136758403(-)$1	1	22	26	11.9999

#PSSM
U : 0.86	u : 0.13	
G : 0.84	g : 0.15	
G : 0.84	g : 0.15	
G : 0.84	g : 0.15	

#score	1115.9999999999998
#seq	93
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_transcript_m3_run1.nuc.txt

#NT
GGCGGUGCCG	chr6:24720871-24721156(-)$1	285	16	26	17.0370
GCCCGCCCCG	chr15:63449498-63449762(-)$1	264	33	43	10.6481
GGCGGCUCGG	chr1:26232785-26233010(-)$1	225	112	122	12.2222
CCCGGCGCCG	chr1:36106924-36107221(-)$1	297	7	17	14.4444
GCAGGAGCCG	chr12:98909426-98909679(+)$1	253	107	117	12.4999
gcaggcgcug	chr11:65769871-65770138(+)$1	267	244	254	11.1111
CGCGGGGCCG	chr6:30688036-30688314(+)$1	278	2	12	13.1481
GACGGUGGCG	chr15:64385842-64386171(-)$1	329	157	167	13.0555
GGCUGCGGCG	chr4:39460418-39460633(-)$1	215	183	193	12.8703
GUCGGGGCCG	chr6:27860776-27861050(-)$1	274	252	262	14.9074
GGCGGGGCCG	chr12:120933828-120934095(+)$1	267	21	31	17.2222
GGCGGCGACG	chr22:38902134-38902410(-)$1	276	227	237	16.2037
GAGGACGCCG	chr19:39109733-39109997(+)$1	264	114	124	10.7407
GGCCGCGCGG	chr3:52029768-52030022(-)$1	254	159	169	12.6851
GACGGCGCGC	chr1:8021672-8021944(+)$1	272	74	84	11.0185
gacggcgagg	chr12:6976600-6976847(+)$1	247	28	38	11.6666
GGCGGAGUCG	chr11:67351841-67352102(+)$1	261	45	55	13.6111
GCGGGGGCCG	chr10:105156063-105156305(-)$1	242	33	43	12.3148
GACGGCGGCG	chr4:103748513-103748787(-)$1	274	0	10	15.8333
GGCGGAGUCG	chr11:67351833-67352041(+)$1	208	53	63	13.6111
GCAGGCGCCG	chr15:41576109-41576408(+)$1	299	231	241	15.0925
GAUGACGCCG	chr19:572492-572804(+)$1	312	31	41	10.4629
GGCGGGGCCG	chr20:57607210-57607495(-)$1	285	35	45	17.2222
CGCGGCCCCG	chr6:10747895-10748216(+)$1	321	115	125	11.4814
UGGGGCGCCG	chr1:205719020-205719280(-)$1	260	104	114	11.8518
GAAGGAGCCG	chr11:85779915-85780219(-)$1	304	285	295	12.7777
GGCAGCGCCC	chr16:56642404-56642656(+)$1	252	10	20	11.8518
GGCCGCGCCG	chr8:126010673-126010976(+)$1	303	130	140	16.2037
GACGGUGCCG	chr17:56429328-56429653(-)$1	325	168	178	16.0185
GCCGGCGCCG	chr9:113018606-113018926(-)$1	320	262	272	18.5185
GACCGCGCCC	chr2:27294368-27294613(-)$1	245	24	34	10.9259
GGCCGCUCCG	chr12:57039581-57039850(-)$1	269	204	214	12.1296
AACGGCGGCG	chr14:69864855-69865148(-)$1	293	151	161	11.4814
GCCGGCGGCG	chr2:170655287-170655538(+)$1	251	117	127	15.5555
GCCAGCGGCG	chr6:86352563-86352827(-)$1	264	182	192	11.8518
GCAGGAGCCG	chr1:235291996-235292247(-)$1	251	2	12	12.4999
GGCGGUGCCG	chr2:28974686-28975030(+)$1	344	18	28	17.0370
GACGCCGCUG	chr11:63742000-63742245(+)$1	245	163	173	10.2777
GGCGGCGGCG	chr5:1801446-1801708(+)$1	262	87	97	16.8518
GGCGGGGCCG	chr6:31704109-31704393(-)$1	284	58	68	17.2222
GGCAGUGCCG	chr12:38557138-38557374(-)$1	236	15	25	13.3333
ggcggcggcg	chr17:7210825-7211170(+)$1	345	145	155	16.8518
GACGGCGCCG	chr11:75110463-75110722(+)$1	259	188	198	18.7962
gccggcucgg	chr3:129034831-129035064(-)$1	233	61	71	10.9259
GACGGAGCCG	chr3:128902521-128902787(-)$1	266	197	207	16.2037
GACGGCGCGG	chr6:144416512-144416800(-)$1	288	54	64	15.2777
gggggcgccg	chr20:30193032-30193344(+)$1	312	296	306	16.2037
GGCGGCGCCC	chr12:120875820-120876105(+)$1	285	11	21	15.5555
GGCGGCUCGG	chr1:26232779-26232985(-)$1	206	87	97	12.2222
CACGUCGCCG	chr19:40336842-40337096(-)$1	254	55	65	10.1851
GGCGGAGCCG	chr22:24236485-24236756(+)$1	271	17	27	17.2222
GGCGGCGGCG	chr19:18433730-18433995(-)$1	265	121	131	16.8518
gccggggccg	chr12:6976647-6976905(+)$1	258	229	239	15.9259

#otherMatches

#Struct PSSM
::::hhhhhh	chr9:128003305-128003571(-)$1	266	9	19	12.6851
IIIII{A{BB	chr6:24720871-24721156(-)$1	285	16	26	17.0370
EEEEDDDD{D	chr15:63449498-63449762(-)$1	264	33	43	10.6481
mmmddddbb2	chr1:26232785-26233010(-)$1	225	112	122	12.2222
{GGGGGGG{B	chr1:36106924-36107221(-)$1	297	7	17	14.4444
cc[bb[ffff	chr12:98909426-98909679(+)$1	253	107	117	12.4999
ffff]a]bb]	chr11:65769871-65770138(+)$1	267	244	254	11.1111
:gggggggbb	chr6:30688036-30688314(+)$1	278	2	12	13.1481
FF}EEEEE:g	chr15:64385842-64386171(-)$1	329	157	167	13.0555
"eeeeellle	chr4:39460418-39460633(-)$1	215	183	193	12.8703
g]cccDDDDE	chr6:27860776-27861050(-)$1	274	252	262	14.9074
EEE{CCCBBM	chr12:120933828-120934095(+)$1	267	21	31	17.2222
ffffCCCGGG	chr22:38902134-38902410(-)$1	276	227	237	16.2037
mmddddffff	chr19:39109733-39109997(+)$1	264	114	124	10.7407
qddddfffff	chr3:52029768-52030022(-)$1	254	159	169	12.6851
KKFFFFFF{A	chr1:8021672-8021944(+)$1	272	74	84	11.0185
CC{A{CCC::	chr12:6976600-6976847(+)$1	247	28	38	11.6666
EEE{DDDD{E	chr11:67351841-67352102(+)$1	261	45	55	13.6111
DDDDDDDD{B	chr10:105156063-105156305(-)$1	242	33	43	12.3148
::::EEEEE{	chr4:103748513-103748787(-)$1	274	0	10	15.8333
cdddd]a22b	chr11:67351833-67352041(+)$1	208	53	63	13.6111
::::ffffff	chr15:41576109-41576408(+)$1	299	231	241	15.0925
::::::::ee	chr19:572492-572804(+)$1	312	31	41	10.4629
MHHHHHHHH:	chr20:57607210-57607495(-)$1	285	35	45	17.2222
GG{EEEEEii	chr6:10747895-10748216(+)$1	321	115	125	11.4814
bb22bbgggg	chr1:205719020-205719280(-)$1	260	104	114	11.8518
e::HHHHHHH	chr11:85779915-85780219(-)$1	304	285	295	12.7777
BGGGGGGG::	chr16:56642404-56642656(+)$1	252	10	20	11.8518
cddddccccc	chr8:126010673-126010976(+)$1	303	130	140	16.2037
cc"""eeeee	chr17:56429328-56429653(-)$1	325	168	178	16.0185
dddd[cccll	chr9:113018606-113018926(-)$1	320	262	272	18.5185
c:BB{EEEEE	chr2:27294368-27294613(-)$1	245	24	34	10.9259
hhhhhhhnnn	chr12:57039581-57039850(-)$1	269	204	214	12.1296
[hhhhhhhh[	chr14:69864855-69865148(-)$1	293	151	161	11.4814
d22eeeee]c	chr2:170655287-170655538(+)$1	251	117	127	15.5555
ccc22a]fff	chr6:86352563-86352827(-)$1	264	182	192	11.8518
CC{BB{DDDD	chr1:235291996-235292247(-)$1	251	2	12	12.4999
FFFFFFNNNN	chr2:28974686-28975030(+)$1	344	18	28	17.0370
BB}CCCEEEE	chr11:63742000-63742245(+)$1	245	163	173	10.2777
qbb]bbccc2	chr5:1801446-1801708(+)$1	262	87	97	16.8518
iiiiiiiicc	chr6:31704109-31704393(-)$1	284	58	68	17.2222
lbb22=====	chr12:38557138-38557374(-)$1	236	15	25	13.3333
[bb[bb[bb[	chr17:7210825-7211170(+)$1	345	145	155	16.8518
GGGGG:ffff	chr11:75110463-75110722(+)$1	259	188	198	18.7962
e!!ccc[fff	chr3:129034831-129035064(-)$1	233	61	71	10.9259
]bb4444ddd	chr3:128902521-128902787(-)$1	266	197	207	16.2037
eee:gggggg	chr6:144416512-144416800(-)$1	288	54	64	15.2777
hEEEEE}BBF	chr20:30193032-30193344(+)$1	312	296	306	16.2037
fffff[bb##	chr12:120875820-120876105(+)$1	285	11	21	15.5555
mmmddddbb2	chr1:26232779-26232985(-)$1	206	87	97	12.2222
bhhhhhhhh]	chr19:40336842-40337096(-)$1	254	55	65	10.1851
fffrrrrrrr	chr22:24236485-24236756(+)$1	271	17	27	17.2222
b[dddd[bbm	chr19:18433730-18433995(-)$1	265	121	131	16.8518
fffff]ccc2	chr12:6976647-6976905(+)$1	258	229	239	15.9259

#DB
....((((((	chr9:128003305-128003571(-)$1	1	9	19	12.6851
(((((.(.((	chr6:24720871-24721156(-)$1	1	16	26	17.0370
((((((((.(	chr15:63449498-63449762(-)$1	1	33	43	10.6481
...)))))).	chr1:26232785-26233010(-)$1	1	112	122	12.2222
.(((((((.(	chr1:36106924-36107221(-)$1	1	7	17	14.4444
((.((.((((	chr12:98909426-98909679(+)$1	1	107	117	12.4999
)))).).)).	chr11:65769871-65770138(+)$1	1	244	254	11.1111
.(((((((((	chr6:30688036-30688314(+)$1	1	2	12	13.1481
)).))))).(	chr15:64385842-64386171(-)$1	1	157	167	13.0555
.(((((...)	chr4:39460418-39460633(-)$1	1	183	193	12.8703
).))))))))	chr6:27860776-27861050(-)$1	1	252	262	14.9074
(((.(((((.	chr12:120933828-120934095(+)$1	1	21	31	17.2222
))))))))))	chr22:38902134-38902410(-)$1	1	227	237	16.2037
..))))((((	chr19:39109733-39109997(+)$1	1	114	124	10.7407
.)))))))))	chr3:52029768-52030022(-)$1	1	159	169	12.6851
..((((((.(	chr1:8021672-8021944(+)$1	1	74	84	11.0185
((.(.(((..	chr12:6976600-6976847(+)$1	1	28	38	11.6666
(((.((((.(	chr11:67351841-67352102(+)$1	1	45	55	13.6111
((((((((.(	chr10:105156063-105156305(-)$1	1	33	43	12.3148
....(((((.	chr4:103748513-103748787(-)$1	1	0	10	15.8333
))))).)..)	chr11:67351833-67352041(+)$1	1	53	63	13.6111
....((((((	chr15:41576109-41576408(+)$1	1	231	241	15.0925
........((	chr19:572492-572804(+)$1	1	31	41	10.4629
.((((((((.	chr20:57607210-57607495(-)$1	1	35	45	17.2222
((.(((((((	chr6:10747895-10748216(+)$1	1	115	125	11.4814
))..))))))	chr1:205719020-205719280(-)$1	1	104	114	11.8518
)..)))))))	chr11:85779915-85780219(-)$1	1	285	295	12.7777
((((((((..	chr16:56642404-56642656(+)$1	1	10	20	11.8518
))))))))))	chr8:126010673-126010976(+)$1	1	130	140	16.2037
((...(((((	chr17:56429328-56429653(-)$1	1	168	178	16.0185
((((.(((..	chr9:113018606-113018926(-)$1	1	262	272	18.5185
).((.(((((	chr2:27294368-27294613(-)$1	1	24	34	10.9259
(((((((...	chr12:57039581-57039850(-)$1	1	204	214	12.1296
.((((((((.	chr14:69864855-69865148(-)$1	1	151	161	11.4814
)..))))).)	chr2:170655287-170655538(+)$1	1	117	127	15.5555
)))..).)))	chr6:86352563-86352827(-)$1	1	182	192	11.8518
((.((.((((	chr1:235291996-235292247(-)$1	1	2	12	12.4999
((((((....	chr2:28974686-28975030(+)$1	1	18	28	17.0370
)).)))))))	chr11:63742000-63742245(+)$1	1	163	173	10.2777
.)).))))).	chr5:1801446-1801708(+)$1	1	87	97	16.8518
))))))))))	chr6:31704109-31704393(-)$1	1	58	68	17.2222
.))..)))))	chr12:38557138-38557374(-)$1	1	15	25	13.3333
.((.((.((.	chr17:7210825-7211170(+)$1	1	145	155	16.8518
))))).((((	chr11:75110463-75110722(+)$1	1	188	198	18.7962
(..(((.(((	chr3:129034831-129035064(-)$1	1	61	71	10.9259
.))....)))	chr3:128902521-128902787(-)$1	1	197	207	16.2037
))).((((((	chr6:144416512-144416800(-)$1	1	54	64	15.2777
)))))).)))	chr20:30193032-30193344(+)$1	1	296	306	16.2037
(((((.((..	chr12:120875820-120876105(+)$1	1	11	21	15.5555
...)))))).	chr1:26232779-26232985(-)$1	1	87	97	12.2222
))))))))).	chr19:40336842-40337096(-)$1	1	55	65	10.1851
(((.......	chr22:24236485-24236756(+)$1	1	17	27	17.2222
(.((((.((.	chr19:18433730-18433995(-)$1	1	121	131	16.8518
))))).))).	chr12:6976647-6976905(+)$1	1	229	239	15.9259

#PSSM
G : 0.77	g : 0.11	C : 0.07	U : 0.01	A : 0.01	
G : 0.44	A : 0.25	C : 0.16	c : 0.05	g : 0.03	U : 0.01	a : 0.01	
C : 0.72	A : 0.09	c : 0.07	G : 0.05	a : 0.01	U : 0.01	g : 0.01	
G : 0.70	g : 0.11	C : 0.09	A : 0.07	U : 0.01	
G : 0.81	g : 0.11	A : 0.03	C : 0.01	U : 0.01	
C : 0.55	A : 0.12	G : 0.11	U : 0.09	c : 0.09	g : 0.01	
G : 0.79	g : 0.09	U : 0.05	C : 0.03	u : 0.01	
C : 0.68	G : 0.14	c : 0.07	U : 0.03	A : 0.01	a : 0.01	g : 0.01	
C : 0.77	G : 0.09	c : 0.05	g : 0.03	u : 0.01	U : 0.01	
G : 0.81	g : 0.11	C : 0.07	

#score	752.4074074074067
#seq	54
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_transcript_m1_run2.nuc.txt

#NT
CCCUG	chr19:36297628-36297897(-)$1	269	118	123	15.0000
CCCUG	chr9:137323573-137323849(+)$1	276	121	126	15.0000
CCCUG	chr19:6679126-6679361(-)$1	235	118	123	15.0000
CCCUG	chr17:1674957-1675268(+)$1	311	34	39	15.0000
CCCUG	chr13:107209345-107209601(-)$1	256	18	23	15.0000
CCCUG	chr17:8168056-8168368(+)$1	312	10	15	15.0000
CCCUG	chr20:62364406-62364654(+)$1	248	116	121	15.0000
CCCUG	chr9:140347149-140347415(-)$1	266	118	123	15.0000
CCCUG	chr17:7809289-7809531(+)$1	242	130	135	15.0000
CCCUG	chr14:24034801-24035051(-)$1	250	48	53	15.0000
CCCUG	chr7:44621412-44621715(-)$1	303	202	207	15.0000
CCCUG	chr20:60887742-60887989(-)$1	247	23	28	15.0000
CCCUG	chr10:58119487-58119789(-)$1	302	268	273	15.0000
CCCUG	chr5:179264834-179265101(-)$1	267	167	172	15.0000
CCCUG	chr11:68180982-68181255(+)$1	273	91	96	15.0000
CCCUG	chr12:123465988-123466239(+)$1	251	53	58	15.0000
CCCUG	chr8:17871331-17871595(+)$1	264	111	116	15.0000
CCCUG	chr5:1089146-1089395(-)$1	249	124	129	15.0000
CCCUG	chr1:109642836-109643045(+)$1	209	127	132	15.0000
CCCUG	chr11:64973763-64974056(+)$1	293	113	118	15.0000
CCCUG	chr17:80048349-80048559(-)$1	210	180	185	15.0000
CCCUG	chr19:2430860-2431154(-)$1	294	112	117	15.0000
CCCUG	chr1:226054417-226054650(-)$1	233	222	227	15.0000
CCCUG	chr9:139975002-139975244(+)$1	242	236	241	15.0000
CCCUG	chr7:1588247-1588470(-)$1	223	19	24	15.0000
CCCUG	chr1:155288300-155288555(+)$1	255	183	188	15.0000
CCCUG	chr20:25472075-25472331(-)$1	256	52	57	15.0000
CCCUG	chr5:1323870-1324134(-)$1	264	15	20	15.0000
CCCUG	chr14:21544770-21545033(+)$1	263	142	147	15.0000
CCCUG	chr3:52832805-52833080(+)$1	275	58	63	15.0000
CCCUG	chr20:39791568-39791791(+)$1	223	3	8	15.0000
CCCUG	chr19:7711908-7712173(+)$1	265	57	62	15.0000
CCCUG	chr12:56679704-56679947(-)$1	243	30	35	15.0000
CCCUG	chr11:47317292-47317576(+)$1	284	116	121	15.0000
CCCUG	chr19:54971787-54972069(+)$1	282	1	6	15.0000
CCCUG	chr22:22041028-22041280(+)$1	252	32	37	15.0000
CCCUG	chr17:79663706-79663981(+)$1	275	54	59	15.0000
CCCUG	chr21:47565498-47565725(-)$1	227	104	109	15.0000
CCCUG	chr2:178097214-178097467(-)$1	253	111	116	15.0000
CCCUG	chr9:140347534-140347780(-)$1	246	70	75	15.0000
CCCUG	chr19:55752644-55752926(-)$1	282	153	158	15.0000
CCCUG	chr20:61588460-61588694(+)$1	234	132	137	15.0000
CCCUG	chr19:15508567-15508827(-)$1	260	114	119	15.0000
CCCUG	chr22:41922114-41922358(+)$1	244	117	122	15.0000
CCCUG	chr19:7675223-7675476(+)$1	253	70	75	15.0000
CCCUG	chr20:17595437-17595662(-)$1	225	51	56	15.0000
CCCUG	chr1:16973817-16974045(+)$1	228	18	23	15.0000
CCCUG	chr17:56283674-56283943(-)$1	269	154	159	15.0000
CCCUG	chr16:71956203-71956458(+)$1	255	244	249	15.0000
CCCUG	chr16:16248541-16248804(-)$1	263	167	172	15.0000
CCCUG	chr11:57261550-57261812(-)$1	262	194	199	15.0000
cccug	chr4:1800836-1801078(+)$1	242	11	16	15.0000
cccug	chr17:73237663-73237933(-)$1	270	89	94	15.0000
CCCUG	chrX:152955700-152955932(+)$1	232	98	103	15.0000
CCCUG	chr14:103570103-103570381(+)$1	278	156	161	15.0000
CCCUG	chr19:45322162-45322422(+)$1	260	59	64	15.0000
CCCUG	chr9:34646929-34647208(+)$1	279	227	232	15.0000
CCCUG	chr19:36297587-36297828(-)$1	241	49	54	15.0000
CCCUG	chr2:219557137-219557436(+)$1	299	234	239	15.0000

#otherMatches

#Struct PSSM
CBB:d	chr16:70712210-70712470(-)$1	260	32	37	15.0000
caaff	chr19:36297628-36297897(-)$1	269	118	123	15.0000
22ddd	chr9:137323573-137323849(+)$1	276	121	126	15.0000
dllld	chr19:6679126-6679361(-)$1	235	118	123	15.0000
ddd[c	chr17:1674957-1675268(+)$1	311	34	39	15.0000
gg:::	chr13:107209345-107209601(-)$1	256	18	23	15.0000
FFF{C	chr17:8168056-8168368(+)$1	312	10	15	15.0000
dd22b	chr20:62364406-62364654(+)$1	248	116	121	15.0000
:::ee	chr9:140347149-140347415(-)$1	266	118	123	15.0000
A~~~~	chr17:7809289-7809531(+)$1	242	130	135	15.0000
bbddd	chr14:24034801-24035051(-)$1	250	48	53	15.0000
e"""b	chr7:44621412-44621715(-)$1	303	202	207	15.0000
ff[bb	chr20:60887742-60887989(-)$1	247	23	28	15.0000
eeeee	chr10:58119487-58119789(-)$1	302	268	273	15.0000
hh]dd	chr5:179264834-179265101(-)$1	267	167	172	15.0000
eeeec	chr11:68180982-68181255(+)$1	273	91	96	15.0000
!dddd	chr12:123465988-123466239(+)$1	251	53	58	15.0000
clllc	chr8:17871331-17871595(+)$1	264	111	116	15.0000
eee::	chr5:1089146-1089395(-)$1	249	124	129	15.0000
HHHHH	chr1:109642836-109643045(+)$1	209	127	132	15.0000
::::e	chr11:64973763-64974056(+)$1	293	113	118	15.0000
dddll	chr17:80048349-80048559(-)$1	210	180	185	15.0000
ggggl	chr19:2430860-2431154(-)$1	294	112	117	15.0000
FFFFF	chr1:226054417-226054650(-)$1	233	222	227	15.0000
:::::	chr9:139975002-139975244(+)$1	242	236	241	15.0000
cccmm	chr7:1588247-1588470(-)$1	223	19	24	15.0000
fffff	chr1:155288300-155288555(+)$1	255	183	188	15.0000
dddcc	chr20:25472075-25472331(-)$1	256	52	57	15.0000
ff!!d	chr5:1323870-1324134(-)$1	264	15	20	15.0000
]dddd	chr14:21544770-21545033(+)$1	263	142	147	15.0000
eeeem	chr3:52832805-52833080(+)$1	275	58	63	15.0000
EEEE:	chr20:39791568-39791791(+)$1	223	3	8	15.0000
cdddd	chr19:7711908-7712173(+)$1	265	57	62	15.0000
ooddd	chr12:56679704-56679947(-)$1	243	30	35	15.0000
fffff	chr11:47317292-47317576(+)$1	284	116	121	15.0000
::CCC	chr19:54971787-54972069(+)$1	282	1	6	15.0000
=====	chr22:22041028-22041280(+)$1	252	32	37	15.0000
55ddd	chr17:79663706-79663981(+)$1	275	54	59	15.0000
ddd[f	chr21:47565498-47565725(-)$1	227	104	109	15.0000
:dddd	chr2:178097214-178097467(-)$1	253	111	116	15.0000
fffll	chr9:140347534-140347780(-)$1	246	70	75	15.0000
mdddd	chr19:55752644-55752926(-)$1	282	153	158	15.0000
=!!cc	chr20:61588460-61588694(+)$1	234	132	137	15.0000
cmmmm	chr19:15508567-15508827(-)$1	260	114	119	15.0000
:::ff	chr22:41922114-41922358(+)$1	244	117	122	15.0000
fff[b	chr19:7675223-7675476(+)$1	253	70	75	15.0000
fffff	chr20:17595437-17595662(-)$1	225	51	56	15.0000
:iiii	chr1:16973817-16974045(+)$1	228	18	23	15.0000
iiiii	chr17:56283674-56283943(-)$1	269	154	159	15.0000
ZZZCC	chr16:71956203-71956458(+)$1	255	244	249	15.0000
cc!!a	chr16:16248541-16248804(-)$1	263	167	172	15.0000
gggcc	chr11:57261550-57261812(-)$1	262	194	199	15.0000
DDDDe	chr4:1800836-1801078(+)$1	242	11	16	15.0000
dddd#	chr17:73237663-73237933(-)$1	270	89	94	15.0000
ccc]b	chrX:152955700-152955932(+)$1	232	98	103	15.0000
bb22b	chr14:103570103-103570381(+)$1	278	156	161	15.0000
hhhhm	chr19:45322162-45322422(+)$1	260	59	64	15.0000
####d	chr9:34646929-34647208(+)$1	279	227	232	15.0000
cbbmm	chr19:36297587-36297828(-)$1	241	49	54	15.0000
f]bb]	chr2:219557137-219557436(+)$1	299	234	239	15.0000

#DB
(((.(	chr16:70712210-70712470(-)$1	1	32	37	15.0000
(((((	chr19:36297628-36297897(-)$1	1	118	123	15.0000
..)))	chr9:137323573-137323849(+)$1	1	121	126	15.0000
(...)	chr19:6679126-6679361(-)$1	1	118	123	15.0000
(((.(	chr17:1674957-1675268(+)$1	1	34	39	15.0000
))...	chr13:107209345-107209601(-)$1	1	18	23	15.0000
(((.(	chr17:8168056-8168368(+)$1	1	10	15	15.0000
))..)	chr20:62364406-62364654(+)$1	1	116	121	15.0000
...((	chr9:140347149-140347415(-)$1	1	118	123	15.0000
)....	chr17:7809289-7809531(+)$1	1	130	135	15.0000
(((((	chr14:24034801-24035051(-)$1	1	48	53	15.0000
(...(	chr7:44621412-44621715(-)$1	1	202	207	15.0000
((.((	chr20:60887742-60887989(-)$1	1	23	28	15.0000
)))))	chr10:58119487-58119789(-)$1	1	268	273	15.0000
)).))	chr5:179264834-179265101(-)$1	1	167	172	15.0000
))))(	chr11:68180982-68181255(+)$1	1	91	96	15.0000
.((((	chr12:123465988-123466239(+)$1	1	53	58	15.0000
(...)	chr8:17871331-17871595(+)$1	1	111	116	15.0000
)))..	chr5:1089146-1089395(-)$1	1	124	129	15.0000
)))))	chr1:109642836-109643045(+)$1	1	127	132	15.0000
....(	chr11:64973763-64974056(+)$1	1	113	118	15.0000
(((..	chr17:80048349-80048559(-)$1	1	180	185	15.0000
((((.	chr19:2430860-2431154(-)$1	1	112	117	15.0000
)))))	chr1:226054417-226054650(-)$1	1	222	227	15.0000
.....	chr9:139975002-139975244(+)$1	1	236	241	15.0000
(((..	chr7:1588247-1588470(-)$1	1	19	24	15.0000
(((((	chr1:155288300-155288555(+)$1	1	183	188	15.0000
)))))	chr20:25472075-25472331(-)$1	1	52	57	15.0000
((..(	chr5:1323870-1324134(-)$1	1	15	20	15.0000
.))))	chr14:21544770-21545033(+)$1	1	142	147	15.0000
((((.	chr3:52832805-52833080(+)$1	1	58	63	15.0000
((((.	chr20:39791568-39791791(+)$1	1	3	8	15.0000
)))))	chr19:7711908-7712173(+)$1	1	57	62	15.0000
..)))	chr12:56679704-56679947(-)$1	1	30	35	15.0000
)))))	chr11:47317292-47317576(+)$1	1	116	121	15.0000
..(((	chr19:54971787-54972069(+)$1	1	1	6	15.0000
(((((	chr22:22041028-22041280(+)$1	1	32	37	15.0000
..)))	chr17:79663706-79663981(+)$1	1	54	59	15.0000
(((.(	chr21:47565498-47565725(-)$1	1	104	109	15.0000
.((((	chr2:178097214-178097467(-)$1	1	111	116	15.0000
(((..	chr9:140347534-140347780(-)$1	1	70	75	15.0000
.))))	chr19:55752644-55752926(-)$1	1	153	158	15.0000
(..((	chr20:61588460-61588694(+)$1	1	132	137	15.0000
(....	chr19:15508567-15508827(-)$1	1	114	119	15.0000
...((	chr22:41922114-41922358(+)$1	1	117	122	15.0000
(((.(	chr19:7675223-7675476(+)$1	1	70	75	15.0000
(((((	chr20:17595437-17595662(-)$1	1	51	56	15.0000
.((((	chr1:16973817-16974045(+)$1	1	18	23	15.0000
)))))	chr17:56283674-56283943(-)$1	1	154	159	15.0000
...))	chr16:71956203-71956458(+)$1	1	244	249	15.0000
((..(	chr16:16248541-16248804(-)$1	1	167	172	15.0000
(((((	chr11:57261550-57261812(-)$1	1	194	199	15.0000
(((((	chr4:1800836-1801078(+)$1	1	11	16	15.0000
((((.	chr17:73237663-73237933(-)$1	1	89	94	15.0000
))).)	chrX:152955700-152955932(+)$1	1	98	103	15.0000
))..)	chr14:103570103-103570381(+)$1	1	156	161	15.0000
((((.	chr19:45322162-45322422(+)$1	1	59	64	15.0000
....(	chr9:34646929-34647208(+)$1	1	227	232	15.0000
)((..	chr19:36297587-36297828(-)$1	1	49	54	15.0000
).)).	chr2:219557137-219557436(+)$1	1	234	239	15.0000

#PSSM
C : 0.96	c : 0.03	
C : 0.96	c : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	

#score	900.0000000000005
#seq	60
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_transcript_m1_run2.nuc.txt

#NT
AGAAG	chr3:184040363-184040607(+)$1	244	134	139	14.9999
AGAAG	chr17:7411631-7411886(+)$1	255	92	97	14.9999
AGAAG	chr5:140903616-140903873(-)$1	257	111	116	14.9999
AGAAG	chr2:232325092-232325326(-)$1	234	61	66	14.9999
AGAAG	chr6:168343753-168343974(+)$1	221	138	143	14.9999
AGAAG	chr12:101779716-101779965(+)$1	249	96	101	14.9999
AGAAG	chr17:65907172-65907462(+)$1	290	163	168	14.9999
AGAAG	chr8:48751675-48751902(-)$1	227	49	54	14.9999
AGAAG	chr21:34927129-34927404(+)$1	275	21	26	14.9999
AGAAG	chr17:57746094-57746400(+)$1	306	140	145	14.9999
AGAAG	chr1:154143039-154143293(-)$1	254	117	122	14.9999
AGAAG	chr15:75664341-75664651(-)$1	310	19	24	14.9999
AGAAG	chr15:50782449-50782801(+)$1	352	227	232	14.9999
AGAAG	chr16:89348021-89348298(-)$1	277	57	62	14.9999
AGAAG	chr13:76415901-76416219(+)$1	318	37	42	14.9999
AGAAG	chr6:7584231-7584467(+)$1	236	72	77	14.9999
AGAAG	chr6:144898135-144898343(+)$1	208	189	194	14.9999
AGAAG	chr10:120795475-120795754(-)$1	279	95	100	14.9999
agaag	chr22:40641922-40642207(+)$1	285	98	103	14.9999
AGAAG	chr2:152330377-152330611(+)$1	234	117	122	14.9999
AGAAG	chr21:40608407-40608713(-)$1	306	111	116	14.9999
AGAAG	chr6:56350099-56350339(-)$1	240	169	174	14.9999
AGAAG	chrX:53585515-53585773(-)$1	258	69	74	14.9999
AGAAG	chr1:55613261-55613520(-)$1	259	68	73	14.9999
AGAAG	chr17:65944132-65944463(+)$1	331	115	120	14.9999
AGAAG	chrX:53563472-53563720(-)$1	248	110	115	14.9999
AGAAG	chr6:151671191-151671411(+)$1	220	113	118	14.9999
agaag	chr14:102549270-102549478(-)$1	208	17	22	14.9999
AGAAG	chr17:4907220-4907455(+)$1	235	11	16	14.9999
AGAAG	chr22:36681185-36681423(-)$1	238	94	99	14.9999
AGAAG	chr5:14488154-14488461(+)$1	307	21	26	14.9999
AGAAG	chr2:198266366-198266614(-)$1	248	79	84	14.9999
AGAAG	chrX:53622175-53622402(-)$1	227	119	124	14.9999
AGAAG	chr8:12957577-12957851(-)$1	274	122	127	14.9999
AGAAG	chr11:608687-608957(+)$1	270	91	96	14.9999
AGAAG	chrX:53591438-53591687(-)$1	249	20	25	14.9999
AGAAG	chr6:31602921-31603148(+)$1	227	169	174	14.9999
AGAAG	chr1:8422642-8422909(-)$1	267	30	35	14.9999
AGAAG	chr11:65835518-65835777(+)$1	259	43	48	14.9999
AGAAG	chr6:56510564-56510815(-)$1	251	124	129	14.9999
AGAAG	chr9:134334523-134334836(+)$1	313	284	289	14.9999
AGAAG	chr14:71444449-71444766(+)$1	317	68	73	14.9999
AGAAG	chr2:232325126-232325338(-)$1	212	73	78	14.9999
AGAAG	chr1:93307221-93307431(+)$1	210	130	135	14.9999
AGAAG	chr16:24583051-24583297(+)$1	246	44	49	14.9999
AGAAG	chr3:184046346-184046586(+)$1	240	17	22	14.9999
AGAAG	chr8:95543118-95543400(-)$1	282	100	105	14.9999
agaag	chr2:102472476-102472701(+)$1	225	24	29	14.9999
AGAAG	chr17:27020613-27020926(+)$1	313	225	230	14.9999
AGAAG	chr7:99631092-99631362(+)$1	270	81	86	14.9999
AGAAG	chr17:57742063-57742333(+)$1	270	232	237	14.9999
AGAAG	chr6:56392190-56392451(-)$1	261	127	132	14.9999
AGAAG	chr9:131379852-131380112(+)$1	260	68	73	14.9999
AGAAG	chr14:103434573-103434797(-)$1	224	15	20	14.9999
AGAAG	chr1:39789889-39790117(+)$1	228	9	14	14.9999
AGAAG	chr14:56084677-56084944(+)$1	267	122	127	14.9999
AGAAG	chrX:53613654-53613911(-)$1	257	148	153	14.9999
AGAAG	chr6:56416933-56417183(-)$1	250	42	47	14.9999
AGAAG	chr4:123192438-123192705(+)$1	267	227	232	14.9999
AGAAG	chr17:35603709-35603993(-)$1	284	139	144	14.9999
AGAAG	chr22:42611209-42611443(-)$1	234	212	217	14.9999
AGAAG	chr17:74392259-74392518(-)$1	259	34	39	14.9999
AGAAG	chr14:56084627-56084870(+)$1	243	172	177	14.9999
AGAAG	chr17:4448220-4448498(-)$1	278	55	60	14.9999

#otherMatches

#Struct PSSM
ooocc	chr14:56117186-56117451(+)$1	265	129	134	14.9999
cc$$$	chr3:184040363-184040607(+)$1	244	134	139	14.9999
:::::	chr17:7411631-7411886(+)$1	255	92	97	14.9999
::::e	chr5:140903616-140903873(-)$1	257	111	116	14.9999
:::::	chr2:232325092-232325326(-)$1	234	61	66	14.9999
meeee	chr6:168343753-168343974(+)$1	221	138	143	14.9999
IIIII	chr12:101779716-101779965(+)$1	249	96	101	14.9999
^^^^^	chr17:65907172-65907462(+)$1	290	163	168	14.9999
d4444	chr8:48751675-48751902(-)$1	227	49	54	14.9999
EEE{B	chr21:34927129-34927404(+)$1	275	21	26	14.9999
%%%%f	chr17:57746094-57746400(+)$1	306	140	145	14.9999
ccc::	chr1:154143039-154143293(-)$1	254	117	122	14.9999
PPPA{	chr15:75664341-75664651(-)$1	310	19	24	14.9999
CCC}D	chr15:50782449-50782801(+)$1	352	227	232	14.9999
ooooo	chr16:89348021-89348298(-)$1	277	57	62	14.9999
wwwww	chr13:76415901-76416219(+)$1	318	37	42	14.9999
DDD{B	chr6:7584231-7584467(+)$1	236	72	77	14.9999
qqqqq	chr6:144898135-144898343(+)$1	208	189	194	14.9999
zzzzc	chr10:120795475-120795754(-)$1	279	95	100	14.9999
qdddd	chr22:40641922-40642207(+)$1	285	98	103	14.9999
[cccm	chr2:152330377-152330611(+)$1	234	117	122	14.9999
bb[gg	chr21:40608407-40608713(-)$1	306	111	116	14.9999
mmmma	chr6:56350099-56350339(-)$1	240	169	174	14.9999
:::cc	chrX:53585515-53585773(-)$1	258	69	74	14.9999
mmccc	chr1:55613261-55613520(-)$1	259	68	73	14.9999
bb]gg	chr17:65944132-65944463(+)$1	331	115	120	14.9999
BB:::	chrX:53563472-53563720(-)$1	248	110	115	14.9999
qqqqq	chr6:151671191-151671411(+)$1	220	113	118	14.9999
^^^^^	chr14:102549270-102549478(-)$1	208	17	22	14.9999
!gggg	chr17:4907220-4907455(+)$1	235	11	16	14.9999
dd:::	chr22:36681185-36681423(-)$1	238	94	99	14.9999
nnncc	chr5:14488154-14488461(+)$1	307	21	26	14.9999
::ccc	chr2:198266366-198266614(-)$1	248	79	84	14.9999
eefff	chrX:53622175-53622402(-)$1	227	119	124	14.9999
MMMMD	chr8:12957577-12957851(-)$1	274	122	127	14.9999
iii::	chr11:608687-608957(+)$1	270	91	96	14.9999
CCLLL	chrX:53591438-53591687(-)$1	249	20	25	14.9999
:::::	chr6:31602921-31603148(+)$1	227	169	174	14.9999
CKKA{	chr1:8422642-8422909(-)$1	267	30	35	14.9999
ggggg	chr11:65835518-65835777(+)$1	259	43	48	14.9999
:====	chr6:56510564-56510815(-)$1	251	124	129	14.9999
ddd[d	chr9:134334523-134334836(+)$1	313	284	289	14.9999
:::DD	chr14:71444449-71444766(+)$1	317	68	73	14.9999
:::::	chr2:232325126-232325338(-)$1	212	73	78	14.9999
fffff	chr1:93307221-93307431(+)$1	210	130	135	14.9999
nnnnn	chr16:24583051-24583297(+)$1	246	44	49	14.9999
errrr	chr3:184046346-184046586(+)$1	240	17	22	14.9999
fffff	chr8:95543118-95543400(-)$1	282	100	105	14.9999
FF:::	chr2:102472476-102472701(+)$1	225	24	29	14.9999
}EEEE	chr17:27020613-27020926(+)$1	313	225	230	14.9999
dd!!d	chr7:99631092-99631362(+)$1	270	81	86	14.9999
EEE}D	chr17:57742063-57742333(+)$1	270	232	237	14.9999
fffff	chr6:56392190-56392451(-)$1	261	127	132	14.9999
fff::	chr9:131379852-131380112(+)$1	260	68	73	14.9999
DKKDD	chr14:103434573-103434797(-)$1	224	15	20	14.9999
:::::	chr1:39789889-39790117(+)$1	228	9	14	14.9999
eHHHH	chr14:56084677-56084944(+)$1	267	122	127	14.9999
A}BB}	chrX:53613654-53613911(-)$1	257	148	153	14.9999
ooooa	chr6:56416933-56417183(-)$1	250	42	47	14.9999
:::cc	chr4:123192438-123192705(+)$1	267	227	232	14.9999
uuucc	chr17:35603709-35603993(-)$1	284	139	144	14.9999
FF|||	chr22:42611209-42611443(-)$1	234	212	217	14.9999
ffppp	chr17:74392259-74392518(-)$1	259	34	39	14.9999
eHHHH	chr14:56084627-56084870(+)$1	243	172	177	14.9999
7777d	chr17:4448220-4448498(-)$1	278	55	60	14.9999

#DB
...))	chr14:56117186-56117451(+)$1	1	129	134	14.9999
((...	chr3:184040363-184040607(+)$1	1	134	139	14.9999
.....	chr17:7411631-7411886(+)$1	1	92	97	14.9999
....(	chr5:140903616-140903873(-)$1	1	111	116	14.9999
.....	chr2:232325092-232325326(-)$1	1	61	66	14.9999
.))))	chr6:168343753-168343974(+)$1	1	138	143	14.9999
)))))	chr12:101779716-101779965(+)$1	1	96	101	14.9999
.....	chr17:65907172-65907462(+)$1	1	163	168	14.9999
)....	chr8:48751675-48751902(-)$1	1	49	54	14.9999
(((.(	chr21:34927129-34927404(+)$1	1	21	26	14.9999
....(	chr17:57746094-57746400(+)$1	1	140	145	14.9999
)))..	chr1:154143039-154143293(-)$1	1	117	122	14.9999
...(.	chr15:75664341-75664651(-)$1	1	19	24	14.9999
))).)	chr15:50782449-50782801(+)$1	1	227	232	14.9999
.....	chr16:89348021-89348298(-)$1	1	57	62	14.9999
.....	chr13:76415901-76416219(+)$1	1	37	42	14.9999
(((.(	chr6:7584231-7584467(+)$1	1	72	77	14.9999
.....	chr6:144898135-144898343(+)$1	1	189	194	14.9999
....)	chr10:120795475-120795754(-)$1	1	95	100	14.9999
.))))	chr22:40641922-40642207(+)$1	1	98	103	14.9999
.(((.	chr2:152330377-152330611(+)$1	1	117	122	14.9999
((.((	chr21:40608407-40608713(-)$1	1	111	116	14.9999
....)	chr6:56350099-56350339(-)$1	1	169	174	14.9999
...((	chrX:53585515-53585773(-)$1	1	69	74	14.9999
..)))	chr1:55613261-55613520(-)$1	1	68	73	14.9999
)).))	chr17:65944132-65944463(+)$1	1	115	120	14.9999
))...	chrX:53563472-53563720(-)$1	1	110	115	14.9999
.....	chr6:151671191-151671411(+)$1	1	113	118	14.9999
.....	chr14:102549270-102549478(-)$1	1	17	22	14.9999
.((((	chr17:4907220-4907455(+)$1	1	11	16	14.9999
))...	chr22:36681185-36681423(-)$1	1	94	99	14.9999
...))	chr5:14488154-14488461(+)$1	1	21	26	14.9999
..(((	chr2:198266366-198266614(-)$1	1	79	84	14.9999
)))))	chrX:53622175-53622402(-)$1	1	119	124	14.9999
....(	chr8:12957577-12957851(-)$1	1	122	127	14.9999
)))..	chr11:608687-608957(+)$1	1	91	96	14.9999
((...	chrX:53591438-53591687(-)$1	1	20	25	14.9999
.....	chr6:31602921-31603148(+)$1	1	169	174	14.9999
(..(.	chr1:8422642-8422909(-)$1	1	30	35	14.9999
)))))	chr11:65835518-65835777(+)$1	1	43	48	14.9999
.((((	chr6:56510564-56510815(-)$1	1	124	129	14.9999
(((.(	chr9:134334523-134334836(+)$1	1	284	289	14.9999
...((	chr14:71444449-71444766(+)$1	1	68	73	14.9999
.....	chr2:232325126-232325338(-)$1	1	73	78	14.9999
)))))	chr1:93307221-93307431(+)$1	1	130	135	14.9999
.....	chr16:24583051-24583297(+)$1	1	44	49	14.9999
(....	chr3:184046346-184046586(+)$1	1	17	22	14.9999
)))))	chr8:95543118-95543400(-)$1	1	100	105	14.9999
((...	chr2:102472476-102472701(+)$1	1	24	29	14.9999
.))))	chr17:27020613-27020926(+)$1	1	225	230	14.9999
((..(	chr7:99631092-99631362(+)$1	1	81	86	14.9999
))).)	chr17:57742063-57742333(+)$1	1	232	237	14.9999
(((((	chr6:56392190-56392451(-)$1	1	127	132	14.9999
)))..	chr9:131379852-131380112(+)$1	1	68	73	14.9999
(..((	chr14:103434573-103434797(-)$1	1	15	20	14.9999
.....	chr1:39789889-39790117(+)$1	1	9	14	14.9999
)))))	chr14:56084677-56084944(+)$1	1	122	127	14.9999
).)).	chrX:53613654-53613911(-)$1	1	148	153	14.9999
....)	chr6:56416933-56417183(-)$1	1	42	47	14.9999
...((	chr4:123192438-123192705(+)$1	1	227	232	14.9999
...))	chr17:35603709-35603993(-)$1	1	139	144	14.9999
))...	chr22:42611209-42611443(-)$1	1	212	217	14.9999
((...	chr17:74392259-74392518(-)$1	1	34	39	14.9999
)))))	chr14:56084627-56084870(+)$1	1	172	177	14.9999
....)	chr17:4448220-4448498(-)$1	1	55	60	14.9999

#PSSM
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	

#score	974.9999999999995
#seq	65
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_transcript_m1_run2.nuc.txt

#NT
uuuuuuuuuuu	chr3:172118276-172118569(+)$1	293	274	285	27.3000
uuuuauauuuu	chr11:102268571-102268809(-)$1	238	82	93	19.1000
UUAUUUUUUUU	chr6:7609220-7609510(+)$1	290	0	11	22.8000
UCUUUUUUUUU	chr8:128753344-128753597(+)$1	253	47	58	23.3000
UUUUUUUUGUU	chr3:52579327-52579583(-)$1	256	141	152	22.7000
UUUGUUGUUUU	chr7:94298276-94298490(+)$1	214	92	103	18.8000
UAUUUUUUUUU	chr20:49551312-49551561(-)$1	249	137	148	23.5000
UUUUUUUAUUU	chr6:18225125-18225425(-)$1	300	88	99	24.6000
UAUUUUUAUUU	chr20:4833021-4833245(-)$1	224	0	11	20.8000
UUUUUUUUUUU	chr17:53470562-53470785(-)$1	223	158	169	27.3000
UUUUUUUGUUU	chr5:135518200-135518487(+)$1	287	232	243	24.2000
UUGUUUUUUUU	chr11:33377955-33378252(+)$1	297	96	107	23.0000
UGUUUUUUUUU	chr8:101269203-101269513(-)$1	310	245	256	23.3000
uUUUUUUUUUU	chr4:100818311-100818600(-)$1	289	241	252	27.3000
UUUUGUUUUGU	chr12:110973110-110973406(-)$1	296	101	112	19.3000
uuuuuuuuuuu	chr2:68406097-68406343(-)$1	246	195	206	27.3000
UUUUGUUAUUU	chr6:35058835-35059142(+)$1	307	277	288	21.2000
UUUUUUUUUUU	chr4:187509280-187509526(-)$1	246	230	241	27.3000
GUUUUUUGUUU	chr6:119500695-119500942(-)$1	247	171	182	19.8000
UUUUUCUUUUU	chr1:169433375-169433614(-)$1	239	73	84	22.6000
UUUUAUUUUUU	chr5:142661179-142661445(-)$1	266	82	93	23.5000
UUUUUGUUUUU	chr22:39214381-39214660(-)$1	279	152	163	22.6000
UUGUUUUUUUU	chr16:72818554-72818771(-)$1	217	74	85	23.0000
UAGUUUUUUUU	chr5:74657096-74657326(+)$1	230	44	55	19.2000
UUUUUUUUUUU	chr2:36776603-36776872(+)$1	269	13	24	27.3000
UUUUUUUUUUU	chr4:166264001-166264349(+)$1	348	331	342	27.3000
UAUUUUUAUUU	chr6:74304524-74304808(-)$1	284	42	53	20.8000
UUUUGUUUAUU	chr14:103377574-103377853(+)$1	279	87	98	19.3000
UUUUUUUUCUU	chr11:33376294-33376543(+)$1	249	52	63	22.7000
GUUUUUUGUUU	chr5:82351253-82351546(-)$1	293	67	78	19.8000
UUUUUUUUUUU	chr2:196602234-196602501(+)$1	267	93	104	27.3000
UUUUGUUAUUU	chr6:122765851-122766138(-)$1	287	93	104	21.2000
UUUCUUUUUUU	chr11:9610499-9610746(+)$1	247	82	93	23.0000
uuuauuuuuuu	chr20:10619500-10619712(-)$1	212	41	52	23.0000
uuuuuuuuuuu	chr18:8639176-8639431(+)$1	255	0	11	27.3000
UUUUCUUUUUU	chr10:93388335-93388578(-)$1	243	44	55	23.5000
uuuuuuuuuuu	chr21:34931025-34931352(+)$1	327	240	251	27.3000
uuuuguguuuu	chr10:96373287-96373535(+)$1	248	69	80	19.8000
UUUUGUUAUUU	chr8:91636641-91636954(-)$1	313	87	98	21.2000
UUUUUUUUUUU	chr6:129898479-129898779(-)$1	300	37	48	27.3000
UGUAUUUUUUU	chr4:78088066-78088346(+)$1	280	101	112	19.0000
GUUUUUUUUUU	chr15:96881830-96882113(+)$1	283	78	89	22.9000
UUUUUUUCUGU	chr17:5336015-5336307(-)$1	292	135	146	19.5000
UUUCUUUCUUU	chr8:57872947-57873215(-)$1	268	82	93	19.8000
UUUUUUGCUUU	chr7:123324276-123324547(-)$1	271	96	107	20.0000
uuuuuuuuuuu	chr10:63853424-63853683(+)$1	259	0	11	27.3000
UCUUUUUAUUU	chrX:102940144-102940392(-)$1	248	158	169	20.6000
UUUUCUUGUUU	chr15:69564143-69564505(+)$1	362	123	134	20.4000
uuuuuuuauuu	chr18:25531160-25531426(-)$1	266	208	219	24.6000

#otherMatches

#Struct PSSM
hhhhhh]gggg	chr3:72427002-72427268(-)$1	266	53	64	23.2000
JJJJJJJJJJZ	chr3:172118276-172118569(+)$1	293	274	285	27.3000
&fffffflllf	chr11:102268571-102268809(-)$1	238	82	93	19.1000
:::::::::::	chr6:7609220-7609510(+)$1	290	0	11	22.8000
:::::::::::	chr8:128753344-128753597(+)$1	253	47	58	23.3000
zzzzzzzffff	chr3:52579327-52579583(-)$1	256	141	152	22.7000
ggg4444gggg	chr7:94298276-94298490(+)$1	214	92	103	18.8000
sssssssssse	chr20:49551312-49551561(-)$1	249	137	148	23.5000
ttttttttttt	chr6:18225125-18225425(-)$1	300	88	99	24.6000
:::::::::::	chr20:4833021-4833245(-)$1	224	0	11	20.8000
gggg$$$$$gg	chr17:53470562-53470785(-)$1	223	158	169	27.3000
:::::::CCC}	chr5:135518200-135518487(+)$1	287	232	243	24.2000
:::::::::::	chr11:33377955-33378252(+)$1	297	96	107	23.0000
FFFF@@@@@@@	chr8:101269203-101269513(-)$1	310	245	256	23.3000
i::::::::::	chr4:100818311-100818600(-)$1	289	241	252	27.3000
fffqqqqqqqq	chr12:110973110-110973406(-)$1	296	101	112	19.3000
f>>>>>>>>>>	chr2:68406097-68406343(-)$1	246	195	206	27.3000
b"""eeeeemm	chr6:35058835-35059142(+)$1	307	277	288	21.2000
22ccc::::::	chr4:187509280-187509526(-)$1	246	230	241	27.3000
:::::gggggg	chr6:119500695-119500942(-)$1	247	171	182	19.8000
===========	chr1:169433375-169433614(-)$1	239	73	84	22.6000
EEEE:::::::	chr5:142661179-142661445(-)$1	266	82	93	23.5000
:::::eeeee[	chr22:39214381-39214660(-)$1	279	152	163	22.6000
!gggggggppp	chr16:72818554-72818771(-)$1	217	74	85	23.0000
ffffffppppp	chr5:74657096-74657326(+)$1	230	44	55	19.2000
===((((((((	chr2:36776603-36776872(+)$1	269	13	24	27.3000
gggg:::::::	chr4:166264001-166264349(+)$1	348	331	342	27.3000
cc333hhhhhh	chr6:74304524-74304808(-)$1	284	42	53	20.8000
d22bb]eeeee	chr14:103377574-103377853(+)$1	279	87	98	19.3000
reeeee]eeee	chr11:33376294-33376543(+)$1	249	52	63	22.7000
CCNNNNNIIII	chr5:82351253-82351546(-)$1	293	67	78	19.8000
+++++++++++	chr2:196602234-196602501(+)$1	267	93	104	27.3000
"""ccc[dddd	chr6:122765851-122766138(-)$1	287	93	104	21.2000
!!ccc!!cccs	chr11:9610499-9610746(+)$1	247	82	93	23.0000
^^^^^^^^^^c	chr20:10619500-10619712(-)$1	212	41	52	23.0000
:::::::::::	chr18:8639176-8639431(+)$1	255	0	11	27.3000
::::::::fff	chr10:93388335-93388578(-)$1	243	44	55	23.5000
^^^^^^^^^^^	chr21:34931025-34931352(+)$1	327	240	251	27.3000
cnnnnnccc33	chr10:96373287-96373535(+)$1	248	69	80	19.8000
eooooooeeee	chr8:91636641-91636954(-)$1	313	87	98	21.2000
gggqqqqqqqq	chr6:129898479-129898779(-)$1	300	37	48	27.3000
:cccooooooc	chr4:78088066-78088346(+)$1	280	101	112	19.0000
iiiiiiii999	chr15:96881830-96882113(+)$1	283	78	89	22.9000
f&&&&&&&ggg	chr17:5336015-5336307(-)$1	292	135	146	19.5000
dd[dddd!!dd	chr8:57872947-57873215(-)$1	268	82	93	19.8000
GG::ddddxxx	chr7:123324276-123324547(-)$1	271	96	107	20.0000
:::::::::::	chr10:63853424-63853683(+)$1	259	0	11	27.3000
ooooooccc22	chrX:102940144-102940392(-)$1	248	158	169	20.6000
ffff:::::::	chr15:69564143-69564505(+)$1	362	123	134	20.4000
:::::::gggg	chr18:25531160-25531426(-)$1	266	208	219	24.6000

#DB
)))))).))))	chr3:72427002-72427268(-)$1	1	53	64	23.2000
)))))))))).	chr3:172118276-172118569(+)$1	1	274	285	27.3000
.((((((...)	chr11:102268571-102268809(-)$1	1	82	93	19.1000
...........	chr6:7609220-7609510(+)$1	1	0	11	22.8000
...........	chr8:128753344-128753597(+)$1	1	47	58	23.3000
.......))))	chr3:52579327-52579583(-)$1	1	141	152	22.7000
)))....))))	chr7:94298276-94298490(+)$1	1	92	103	18.8000
..........)	chr20:49551312-49551561(-)$1	1	137	148	23.5000
...........	chr6:18225125-18225425(-)$1	1	88	99	24.6000
...........	chr20:4833021-4833245(-)$1	1	0	11	20.8000
((((.....((	chr17:53470562-53470785(-)$1	1	158	169	27.3000
.......))).	chr5:135518200-135518487(+)$1	1	232	243	24.2000
...........	chr11:33377955-33378252(+)$1	1	96	107	23.0000
)))).......	chr8:101269203-101269513(-)$1	1	245	256	23.3000
)..........	chr4:100818311-100818600(-)$1	1	241	252	27.3000
(((........	chr12:110973110-110973406(-)$1	1	101	112	19.3000
)..........	chr2:68406097-68406343(-)$1	1	195	206	27.3000
(...(((((..	chr6:35058835-35059142(+)$1	1	277	288	21.2000
..)))......	chr4:187509280-187509526(-)$1	1	230	241	27.3000
.....((((((	chr6:119500695-119500942(-)$1	1	171	182	19.8000
)))))))))))	chr1:169433375-169433614(-)$1	1	73	84	22.6000
((((.......	chr5:142661179-142661445(-)$1	1	82	93	23.5000
.....(((((.	chr22:39214381-39214660(-)$1	1	152	163	22.6000
.(((((((...	chr16:72818554-72818771(-)$1	1	74	85	23.0000
((((((.....	chr5:74657096-74657326(+)$1	1	44	55	19.2000
(((........	chr2:36776603-36776872(+)$1	1	13	24	27.3000
)))).......	chr4:166264001-166264349(+)$1	1	331	342	27.3000
))...))))))	chr6:74304524-74304808(-)$1	1	42	53	20.8000
)..)).)))))	chr14:103377574-103377853(+)$1	1	87	98	19.3000
.))))).))))	chr11:33376294-33376543(+)$1	1	52	63	22.7000
((.....((((	chr5:82351253-82351546(-)$1	1	67	78	19.8000
...........	chr2:196602234-196602501(+)$1	1	93	104	27.3000
...(((.((((	chr6:122765851-122766138(-)$1	1	93	104	21.2000
..(((..(((.	chr11:9610499-9610746(+)$1	1	82	93	23.0000
..........)	chr20:10619500-10619712(-)$1	1	41	52	23.0000
...........	chr18:8639176-8639431(+)$1	1	0	11	27.3000
........(((	chr10:93388335-93388578(-)$1	1	44	55	23.5000
...........	chr21:34931025-34931352(+)$1	1	240	251	27.3000
(.....)))..	chr10:96373287-96373535(+)$1	1	69	80	19.8000
(......))))	chr8:91636641-91636954(-)$1	1	87	98	21.2000
(((........	chr6:129898479-129898779(-)$1	1	37	48	27.3000
.(((......)	chr4:78088066-78088346(+)$1	1	101	112	19.0000
))))))))...	chr15:96881830-96882113(+)$1	1	78	89	22.9000
(.......(((	chr17:5336015-5336307(-)$1	1	135	146	19.5000
((.((((..((	chr8:57872947-57873215(-)$1	1	82	93	19.8000
))..((((...	chr7:123324276-123324547(-)$1	1	96	107	20.0000
...........	chr10:63853424-63853683(+)$1	1	0	11	27.3000
......)))..	chrX:102940144-102940392(-)$1	1	158	169	20.6000
)))).......	chr15:69564143-69564505(+)$1	1	123	134	20.4000
.......((((	chr18:25531160-25531426(-)$1	1	208	219	24.6000

#PSSM
U : 0.74	u : 0.19	G : 0.06	
U : 0.66	u : 0.18	A : 0.08	C : 0.04	G : 0.04	
U : 0.74	u : 0.18	G : 0.06	A : 0.02	
U : 0.74	u : 0.16	C : 0.04	G : 0.02	a : 0.02	A : 0.02	
U : 0.66	u : 0.14	G : 0.10	C : 0.04	a : 0.02	A : 0.02	g : 0.02	
U : 0.78	u : 0.18	C : 0.02	G : 0.02	
U : 0.76	u : 0.14	G : 0.06	a : 0.02	g : 0.02	
U : 0.54	u : 0.16	A : 0.14	G : 0.08	C : 0.06	a : 0.02	
U : 0.76	u : 0.18	G : 0.02	A : 0.02	C : 0.02	
U : 0.78	u : 0.18	G : 0.04	
U : 0.82	u : 0.18	

#score	1149.2000000000012
#seq	50
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_transcript_m1_run2.nuc.txt

#NT
gaa	chr3:6622591-6622912(+)$1	321	4	7	9.0000
GAA	chr6:168281066-168281300(+)$1	234	71	74	9.0000
GAA	chr14:56137383-56137628(+)$1	245	30	33	9.0000
GAA	chr3:12531182-12531568(+)$1	386	99	102	9.0000
GAA	chr15:64968300-64968563(+)$1	263	35	38	9.0000
GAA	chr17:48456362-48456606(+)$1	244	111	114	9.0000
GAA	chr9:100437680-100437967(-)$1	287	20	23	9.0000
GAA	chr11:43457772-43457984(+)$1	212	21	24	9.0000
GAA	chr20:49197716-49197988(+)$1	272	4	7	9.0000
GAA	chrX:48855750-48855975(-)$1	225	71	74	9.0000
GAA	chr5:162918066-162918300(+)$1	234	89	92	9.0000
GAA	chr2:239355169-239355421(+)$1	252	16	19	9.0000
GAA	chr9:136198846-136199122(-)$1	276	3	6	9.0000
GAA	chr12:133362848-133363111(-)$1	263	30	33	9.0000
GAA	chr11:3060963-3061215(-)$1	252	27	30	9.0000
GAA	chr9:130941487-130941754(-)$1	267	23	26	9.0000
GAA	chr2:118578636-118578876(+)$1	240	5	8	9.0000
GAA	chr4:83349070-83349274(-)$1	204	13	16	9.0000
gaa	chr22:40796648-40796909(+)$1	261	21	24	9.0000
GAA	chr11:65267978-65268184(+)$1	206	8	11	9.0000
GAA	chr19:10252677-10252947(-)$1	270	57	60	9.0000
GAA	chr7:155473322-155473588(+)$1	266	16	19	9.0000
gaa	chr3:37363158-37363398(+)$1	240	10	13	9.0000
gaa	chrX:154004976-154005214(+)$1	238	114	117	9.0000
GAA	chr3:129195158-129195418(+)$1	260	3	6	9.0000
GAA	chr3:153993828-153994110(-)$1	282	0	3	9.0000
GAA	chrX:129055196-129055469(+)$1	273	5	8	9.0000
GAA	chr8:38107189-38107423(+)$1	234	4	7	9.0000
GAA	chr11:71715695-71715963(-)$1	268	139	142	9.0000
GAA	chr5:145557101-145557317(-)$1	216	21	24	9.0000
GAA	chr5:122154412-122154650(+)$1	238	21	24	9.0000
GAA	chr2:128253567-128253802(-)$1	235	17	20	9.0000
GAA	chr7:152132815-152133090(-)$1	275	97	100	9.0000
GAA	chr8:41573107-41573341(-)$1	234	27	30	9.0000
GAA	chr14:58814417-58814681(+)$1	264	14	17	9.0000
GAA	chr11:812674-812879(+)$1	205	92	95	9.0000
GAA	chr3:142741773-142741991(+)$1	218	13	16	9.0000
GAA	chr6:7295523-7295798(-)$1	275	45	48	9.0000
GAA	chr17:36873027-36873296(+)$1	269	10	13	9.0000
GAA	chr11:110125997-110126210(-)$1	213	1	4	9.0000
GAA	chr18:211108-211361(+)$1	253	26	29	9.0000
GAA	chr22:50217328-50217638(-)$1	310	104	107	9.0000
GAA	chr17:49097441-49097722(-)$1	281	111	114	9.0000
GAA	chr12:104325957-104326193(+)$1	236	48	51	9.0000
GAA	chr22:20074648-20074932(+)$1	284	18	21	9.0000
GAA	chr19:7707769-7708031(+)$1	262	101	104	9.0000
GAA	chr7:86824283-86824546(+)$1	263	20	23	9.0000
GAA	chr12:104327932-104328164(+)$1	232	74	77	9.0000
GAA	chr11:73950151-73950403(+)$1	252	30	33	9.0000
GAA	chr5:36976178-36976402(+)$1	224	100	103	9.0000
GAA	chr5:145862155-145862378(+)$1	223	29	32	9.0000
GAA	chr3:50103689-50103945(+)$1	256	21	24	9.0000
GAA	chr2:44573307-44573631(-)$1	324	69	72	9.0000
GAA	chr17:45297264-45297513(+)$1	249	54	57	9.0000
GAA	chr11:64026437-64026667(+)$1	230	148	151	9.0000
GAA	chr1:1309545-1309798(-)$1	253	121	124	9.0000
GAA	chr5:145538869-145539082(-)$1	213	7	10	9.0000
GAA	chr5:145557009-145557249(-)$1	240	21	24	9.0000
GAA	chr19:6381047-6381270(-)$1	223	216	219	9.0000
GAA	chr21:34931844-34932083(+)$1	239	29	32	9.0000
GAA	chr2:27900107-27900330(+)$1	223	10	13	9.0000
GAA	chr8:28866510-28866752(+)$1	242	6	9	9.0000
GAA	chr14:102549345-102549574(-)$1	229	47	50	9.0000
GAA	chr12:120214463-120214704(-)$1	241	23	26	9.0000
GAA	chr11:812659-812864(+)$1	205	107	110	9.0000
GAA	chr11:61646838-61647080(-)$1	242	43	46	9.0000
GAA	chr17:47119557-47119820(+)$1	263	16	19	9.0000
GAA	chr1:245019659-245019914(-)$1	255	15	18	9.0000
GAA	chr20:2638503-2638746(+)$1	243	18	21	9.0000
GAA	chr12:25054646-25054894(-)$1	248	111	114	9.0000
GAA	chr11:6629555-6629824(+)$1	269	18	21	9.0000
GAA	chr15:93527476-93527758(+)$1	282	43	46	9.0000
GAA	chr8:144407457-144407758(-)$1	301	54	57	9.0000
GAA	chr5:138661077-138661348(+)$1	271	42	45	9.0000
GAA	chr8:97243187-97243460(-)$1	273	30	33	9.0000
GAA	chr5:138677454-138677742(+)$1	288	33	36	9.0000
GAA	chr9:127999048-127999277(-)$1	229	31	34	9.0000
GAA	chr1:24981251-24981550(+)$1	299	70	73	9.0000
GAA	chr11:58378327-58378632(+)$1	305	64	67	9.0000
GAA	chr5:145878073-145878341(+)$1	268	38	41	9.0000
GAA	chr17:65082995-65083255(-)$1	260	34	37	9.0000
GAA	chrX:122744668-122744889(-)$1	221	104	107	9.0000
GAA	chr19:8536116-8536368(+)$1	252	61	64	9.0000
GAA	chr1:156845826-156846084(+)$1	258	109	112	9.0000
GAA	chr4:74014593-74014838(-)$1	245	2	5	9.0000
GAA	chr1:142713060-142713334(-)$1	274	10	13	9.0000
GAA	chr22:24718493-24718796(+)$1	303	14	17	9.0000
GAA	chr3:183860503-183860775(+)$1	272	80	83	9.0000
GAA	chr16:2815002-2815239(+)$1	237	69	72	9.0000
GAA	chrX:119065967-119066221(-)$1	254	2	5	9.0000
GAA	chr6:111701088-111701365(-)$1	277	11	14	9.0000
GAA	chr17:36971169-36971451(-)$1	282	51	54	9.0000
GAA	chr1:21106236-21106496(-)$1	260	33	36	9.0000
GAA	chr15:41366643-41366862(-)$1	219	8	11	9.0000
gaa	chr19:54647294-54647535(+)$1	241	3	6	9.0000
GAA	chr2:169745918-169746143(-)$1	225	40	43	9.0000
GAA	chr14:21821545-21821781(-)$1	236	83	86	9.0000
GAA	chr2:27672082-27672341(-)$1	259	4	7	9.0000
GAA	chr12:132239860-132240126(+)$1	266	121	124	9.0000

#otherMatches

#Struct PSSM
ddd	chr9:123307911-123308169(-)$1	258	22	25	9.0000
:::	chr3:6622591-6622912(+)$1	321	4	7	9.0000
HHH	chr6:168281066-168281300(+)$1	234	71	74	9.0000
:::	chr14:56137383-56137628(+)$1	245	30	33	9.0000
)))	chr3:12531182-12531568(+)$1	386	99	102	9.0000
bb[	chr15:64968300-64968563(+)$1	263	35	38	9.0000
:::	chr17:48456362-48456606(+)$1	244	111	114	9.0000
lll	chr9:100437680-100437967(-)$1	287	20	23	9.0000
JJJ	chr11:43457772-43457984(+)$1	212	21	24	9.0000
CC{	chr20:49197716-49197988(+)$1	272	4	7	9.0000
g!!	chrX:48855750-48855975(-)$1	225	71	74	9.0000
f[b	chr5:162918066-162918300(+)$1	234	89	92	9.0000
FFF	chr2:239355169-239355421(+)$1	252	16	19	9.0000
qqq	chr9:136198846-136199122(-)$1	276	3	6	9.0000
nnn	chr12:133362848-133363111(-)$1	263	30	33	9.0000
ddd	chr11:3060963-3061215(-)$1	252	27	30	9.0000
!!b	chr9:130941487-130941754(-)$1	267	23	26	9.0000
:::	chr2:118578636-118578876(+)$1	240	5	8	9.0000
EEh	chr4:83349070-83349274(-)$1	204	13	16	9.0000
:::	chr22:40796648-40796909(+)$1	261	21	24	9.0000
:::	chr11:65267978-65268184(+)$1	206	8	11	9.0000
:::	chr19:10252677-10252947(-)$1	270	57	60	9.0000
CC{	chr7:155473322-155473588(+)$1	266	16	19	9.0000
LLL	chr3:37363158-37363398(+)$1	240	10	13	9.0000
999	chrX:154004976-154005214(+)$1	238	114	117	9.0000
:::	chr3:129195158-129195418(+)$1	260	3	6	9.0000
:::	chr3:153993828-153994110(-)$1	282	0	3	9.0000
:::	chrX:129055196-129055469(+)$1	273	5	8	9.0000
d!!	chr8:38107189-38107423(+)$1	234	4	7	9.0000
b::	chr11:71715695-71715963(-)$1	268	139	142	9.0000
ddd	chr5:145557101-145557317(-)$1	216	21	24	9.0000
===	chr5:122154412-122154650(+)$1	238	21	24	9.0000
hhh	chr2:128253567-128253802(-)$1	235	17	20	9.0000
ee3	chr7:152132815-152133090(-)$1	275	97	100	9.0000
c22	chr8:41573107-41573341(-)$1	234	27	30	9.0000
fff	chr14:58814417-58814681(+)$1	264	14	17	9.0000
==:	chr11:812674-812879(+)$1	205	92	95	9.0000
ff^	chr3:142741773-142741991(+)$1	218	13	16	9.0000
DDD	chr6:7295523-7295798(-)$1	275	45	48	9.0000
b!!	chr17:36873027-36873296(+)$1	269	10	13	9.0000
eee	chr11:110125997-110126210(-)$1	213	1	4	9.0000
e::	chr18:211108-211361(+)$1	253	26	29	9.0000
c22	chr22:50217328-50217638(-)$1	310	104	107	9.0000
ccc	chr17:49097441-49097722(-)$1	281	111	114	9.0000
EEE	chr12:104325957-104326193(+)$1	236	48	51	9.0000
{BB	chr22:20074648-20074932(+)$1	284	18	21	9.0000
cc[	chr19:7707769-7708031(+)$1	262	101	104	9.0000
a[b	chr7:86824283-86824546(+)$1	263	20	23	9.0000
:::	chr12:104327932-104328164(+)$1	232	74	77	9.0000
:::	chr11:73950151-73950403(+)$1	252	30	33	9.0000
e66	chr5:36976178-36976402(+)$1	224	100	103	9.0000
:::	chr5:145862155-145862378(+)$1	223	29	32	9.0000
'''	chr3:50103689-50103945(+)$1	256	21	24	9.0000
NNN	chr2:44573307-44573631(-)$1	324	69	72	9.0000
ccl	chr17:45297264-45297513(+)$1	249	54	57	9.0000
qqq	chr11:64026437-64026667(+)$1	230	148	151	9.0000
]a3	chr1:1309545-1309798(-)$1	253	121	124	9.0000
BB{	chr5:145538869-145539082(-)$1	213	7	10	9.0000
JJJ	chr5:145557009-145557249(-)$1	240	21	24	9.0000
:::	chr19:6381047-6381270(-)$1	223	216	219	9.0000
:::	chr21:34931844-34932083(+)$1	239	29	32	9.0000
B::	chr2:27900107-27900330(+)$1	223	10	13	9.0000
$$$	chr8:28866510-28866752(+)$1	242	6	9	9.0000
fff	chr14:102549345-102549574(-)$1	229	47	50	9.0000
e$$	chr12:120214463-120214704(-)$1	241	23	26	9.0000
==:	chr11:812659-812864(+)$1	205	107	110	9.0000
FFK	chr11:61646838-61647080(-)$1	242	43	46	9.0000
coo	chr17:47119557-47119820(+)$1	263	16	19	9.0000
b::	chr1:245019659-245019914(-)$1	255	15	18	9.0000
ppp	chr20:2638503-2638746(+)$1	243	18	21	9.0000
iii	chr12:25054646-25054894(-)$1	248	111	114	9.0000
B{F	chr11:6629555-6629824(+)$1	269	18	21	9.0000
:::	chr15:93527476-93527758(+)$1	282	43	46	9.0000
d::	chr8:144407457-144407758(-)$1	301	54	57	9.0000
:::	chr5:138661077-138661348(+)$1	271	42	45	9.0000
:::	chr8:97243187-97243460(-)$1	273	30	33	9.0000
c!!	chr5:138677454-138677742(+)$1	288	33	36	9.0000
LLL	chr9:127999048-127999277(-)$1	229	31	34	9.0000
22d	chr1:24981251-24981550(+)$1	299	70	73	9.0000
fff	chr11:58378327-58378632(+)$1	305	64	67	9.0000
ccc	chr5:145878073-145878341(+)$1	268	38	41	9.0000
bb!	chr17:65082995-65083255(-)$1	260	34	37	9.0000
%%%	chrX:122744668-122744889(-)$1	221	104	107	9.0000
hhh	chr19:8536116-8536368(+)$1	252	61	64	9.0000
[dd	chr1:156845826-156846084(+)$1	258	109	112	9.0000
ggg	chr4:74014593-74014838(-)$1	245	2	5	9.0000
ILL	chr1:142713060-142713334(-)$1	274	10	13	9.0000
FFL	chr22:24718493-24718796(+)$1	303	14	17	9.0000
===	chr3:183860503-183860775(+)$1	272	80	83	9.0000
)))	chr16:2815002-2815239(+)$1	237	69	72	9.0000
GGG	chrX:119065967-119066221(-)$1	254	2	5	9.0000
ff!	chr6:111701088-111701365(-)$1	277	11	14	9.0000
mhh	chr17:36971169-36971451(-)$1	282	51	54	9.0000
c::	chr1:21106236-21106496(-)$1	260	33	36	9.0000
fff	chr15:41366643-41366862(-)$1	219	8	11	9.0000
CCC	chr19:54647294-54647535(+)$1	241	3	6	9.0000
[a$	chr2:169745918-169746143(-)$1	225	40	43	9.0000
333	chr14:21821545-21821781(-)$1	236	83	86	9.0000
E::	chr2:27672082-27672341(-)$1	259	4	7	9.0000
]ee	chr12:132239860-132240126(+)$1	266	121	124	9.0000

#DB
(((	chr9:123307911-123308169(-)$1	1	22	25	9.0000
...	chr3:6622591-6622912(+)$1	1	4	7	9.0000
(((	chr6:168281066-168281300(+)$1	1	71	74	9.0000
...	chr14:56137383-56137628(+)$1	1	30	33	9.0000
...	chr3:12531182-12531568(+)$1	1	99	102	9.0000
((.	chr15:64968300-64968563(+)$1	1	35	38	9.0000
...	chr17:48456362-48456606(+)$1	1	111	114	9.0000
...	chr9:100437680-100437967(-)$1	1	20	23	9.0000
(((	chr11:43457772-43457984(+)$1	1	21	24	9.0000
((.	chr20:49197716-49197988(+)$1	1	4	7	9.0000
(..	chrX:48855750-48855975(-)$1	1	71	74	9.0000
(.(	chr5:162918066-162918300(+)$1	1	89	92	9.0000
(((	chr2:239355169-239355421(+)$1	1	16	19	9.0000
...	chr9:136198846-136199122(-)$1	1	3	6	9.0000
...	chr12:133362848-133363111(-)$1	1	30	33	9.0000
(((	chr11:3060963-3061215(-)$1	1	27	30	9.0000
..(	chr9:130941487-130941754(-)$1	1	23	26	9.0000
...	chr2:118578636-118578876(+)$1	1	5	8	9.0000
(((	chr4:83349070-83349274(-)$1	1	13	16	9.0000
...	chr22:40796648-40796909(+)$1	1	21	24	9.0000
...	chr11:65267978-65268184(+)$1	1	8	11	9.0000
...	chr19:10252677-10252947(-)$1	1	57	60	9.0000
((.	chr7:155473322-155473588(+)$1	1	16	19	9.0000
...	chr3:37363158-37363398(+)$1	1	10	13	9.0000
...	chrX:154004976-154005214(+)$1	1	114	117	9.0000
...	chr3:129195158-129195418(+)$1	1	3	6	9.0000
...	chr3:153993828-153994110(-)$1	1	0	3	9.0000
...	chrX:129055196-129055469(+)$1	1	5	8	9.0000
(..	chr8:38107189-38107423(+)$1	1	4	7	9.0000
)..	chr11:71715695-71715963(-)$1	1	139	142	9.0000
)))	chr5:145557101-145557317(-)$1	1	21	24	9.0000
(((	chr5:122154412-122154650(+)$1	1	21	24	9.0000
(((	chr2:128253567-128253802(-)$1	1	17	20	9.0000
)).	chr7:152132815-152133090(-)$1	1	97	100	9.0000
)..	chr8:41573107-41573341(-)$1	1	27	30	9.0000
)))	chr14:58814417-58814681(+)$1	1	14	17	9.0000
)).	chr11:812674-812879(+)$1	1	92	95	9.0000
((.	chr3:142741773-142741991(+)$1	1	13	16	9.0000
(((	chr6:7295523-7295798(-)$1	1	45	48	9.0000
(..	chr17:36873027-36873296(+)$1	1	10	13	9.0000
(((	chr11:110125997-110126210(-)$1	1	1	4	9.0000
)..	chr18:211108-211361(+)$1	1	26	29	9.0000
)..	chr22:50217328-50217638(-)$1	1	104	107	9.0000
(((	chr17:49097441-49097722(-)$1	1	111	114	9.0000
(((	chr12:104325957-104326193(+)$1	1	48	51	9.0000
.((	chr22:20074648-20074932(+)$1	1	18	21	9.0000
((.	chr19:7707769-7708031(+)$1	1	101	104	9.0000
(.(	chr7:86824283-86824546(+)$1	1	20	23	9.0000
...	chr12:104327932-104328164(+)$1	1	74	77	9.0000
...	chr11:73950151-73950403(+)$1	1	30	33	9.0000
)..	chr5:36976178-36976402(+)$1	1	100	103	9.0000
...	chr5:145862155-145862378(+)$1	1	29	32	9.0000
...	chr3:50103689-50103945(+)$1	1	21	24	9.0000
...	chr2:44573307-44573631(-)$1	1	69	72	9.0000
((.	chr17:45297264-45297513(+)$1	1	54	57	9.0000
...	chr11:64026437-64026667(+)$1	1	148	151	9.0000
.).	chr1:1309545-1309798(-)$1	1	121	124	9.0000
((.	chr5:145538869-145539082(-)$1	1	7	10	9.0000
(((	chr5:145557009-145557249(-)$1	1	21	24	9.0000
...	chr19:6381047-6381270(-)$1	1	216	219	9.0000
...	chr21:34931844-34932083(+)$1	1	29	32	9.0000
(..	chr2:27900107-27900330(+)$1	1	10	13	9.0000
...	chr8:28866510-28866752(+)$1	1	6	9	9.0000
(((	chr14:102549345-102549574(-)$1	1	47	50	9.0000
(..	chr12:120214463-120214704(-)$1	1	23	26	9.0000
)).	chr11:812659-812864(+)$1	1	107	110	9.0000
((.	chr11:61646838-61647080(-)$1	1	43	46	9.0000
(..	chr17:47119557-47119820(+)$1	1	16	19	9.0000
)..	chr1:245019659-245019914(-)$1	1	15	18	9.0000
...	chr20:2638503-2638746(+)$1	1	18	21	9.0000
)))	chr12:25054646-25054894(-)$1	1	111	114	9.0000
(.(	chr11:6629555-6629824(+)$1	1	18	21	9.0000
...	chr15:93527476-93527758(+)$1	1	43	46	9.0000
)..	chr8:144407457-144407758(-)$1	1	54	57	9.0000
...	chr5:138661077-138661348(+)$1	1	42	45	9.0000
...	chr8:97243187-97243460(-)$1	1	30	33	9.0000
(..	chr5:138677454-138677742(+)$1	1	33	36	9.0000
...	chr9:127999048-127999277(-)$1	1	31	34	9.0000
..)	chr1:24981251-24981550(+)$1	1	70	73	9.0000
)))	chr11:58378327-58378632(+)$1	1	64	67	9.0000
)))	chr5:145878073-145878341(+)$1	1	38	41	9.0000
((.	chr17:65082995-65083255(-)$1	1	34	37	9.0000
...	chrX:122744668-122744889(-)$1	1	104	107	9.0000
(((	chr19:8536116-8536368(+)$1	1	61	64	9.0000
.((	chr1:156845826-156846084(+)$1	1	109	112	9.0000
(((	chr4:74014593-74014838(-)$1	1	2	5	9.0000
(..	chr1:142713060-142713334(-)$1	1	10	13	9.0000
((.	chr22:24718493-24718796(+)$1	1	14	17	9.0000
)))	chr3:183860503-183860775(+)$1	1	80	83	9.0000
...	chr16:2815002-2815239(+)$1	1	69	72	9.0000
(((	chrX:119065967-119066221(-)$1	1	2	5	9.0000
((.	chr6:111701088-111701365(-)$1	1	11	14	9.0000
.))	chr17:36971169-36971451(-)$1	1	51	54	9.0000
)..	chr1:21106236-21106496(-)$1	1	33	36	9.0000
(((	chr15:41366643-41366862(-)$1	1	8	11	9.0000
(((	chr19:54647294-54647535(+)$1	1	3	6	9.0000
.(.	chr2:169745918-169746143(-)$1	1	40	43	9.0000
...	chr14:21821545-21821781(-)$1	1	83	86	9.0000
(..	chr2:27672082-27672341(-)$1	1	4	7	9.0000
.))	chr12:132239860-132240126(+)$1	1	121	124	9.0000

#PSSM
G : 0.95	g : 0.05	
A : 0.95	a : 0.05	
A : 0.95	a : 0.05	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_CDS_m2_run2.nuc.txt

#NT
CUGGG	chr17:7129834-7130138(-)$1	304	86	91	15.0000
CUGGG	chr2:187373131-187373374(+)$1	243	12	17	15.0000
CUGGG	chr18:690527-690879(-)$1	352	49	54	15.0000
CUGGG	chr9:139836032-139836274(-)$1	242	185	190	15.0000
CUGGG	chr14:24108257-24108488(+)$1	231	65	70	15.0000
CUGGG	chr2:239342036-239342304(+)$1	268	63	68	15.0000
CUGGG	chr9:130706851-130707120(-)$1	269	75	80	15.0000
CUGGG	chr19:39334447-39334744(-)$1	297	103	108	15.0000
CUGGG	chr17:79974643-79974917(+)$1	274	118	123	15.0000
CUGGG	chr3:184082598-184082883(+)$1	285	62	67	15.0000
CUGGG	chr17:1674957-1675268(+)$1	311	47	52	15.0000
CUGGG	chr14:23447538-23447797(-)$1	259	107	112	15.0000
CUGGG	chr11:67810653-67810959(+)$1	306	100	105	15.0000
CUGGG	chr4:1805917-1806160(+)$1	243	65	70	15.0000
CUGGG	chr21:45739780-45740074(+)$1	294	105	110	15.0000
CUGGG	chr19:11313284-11313537(-)$1	253	89	94	15.0000
CUGGG	chr1:249108693-249108981(-)$1	288	126	131	15.0000
CUGGG	chr11:46749382-46749647(+)$1	265	42	47	15.0000
cuggg	chr11:67074691-67074958(+)$1	267	60	65	15.0000
CUGGG	chr20:3028196-3028496(+)$1	300	21	26	15.0000
cuggg	chr17:73237663-73237933(-)$1	270	78	83	15.0000
CUGGG	chr17:79913309-79913534(-)$1	225	9	14	15.0000
CUGGG	chr16:57806094-57806355(-)$1	261	82	87	15.0000
CUGGG	chr19:16974342-16974600(+)$1	258	105	110	15.0000
CUGGG	chr11:75153517-75153798(-)$1	281	11	16	15.0000
CUGGG	chr3:38416483-38416753(+)$1	270	157	162	15.0000
CUGGG	chr3:184098860-184099135(+)$1	275	98	103	15.0000
CUGGG	chr19:45573131-45573433(+)$1	302	259	264	15.0000
CUGGG	chr14:74754481-74754736(-)$1	255	38	43	15.0000
CUGGG	chr19:19758229-19758480(-)$1	251	200	205	15.0000
CUGGG	chr16:30001948-30002222(+)$1	274	89	94	15.0000
CUGGG	chr1:155145267-155145516(-)$1	249	205	210	15.0000
CUGGG	chr14:21464791-21465039(+)$1	248	182	187	15.0000
CUGGG	chr20:45912271-45912554(-)$1	283	125	130	15.0000
CUGGG	chr3:48670945-48671235(-)$1	290	31	36	15.0000
CUGGG	chr11:419628-419898(-)$1	270	15	20	15.0000
CUGGG	chr15:75649133-75649388(-)$1	255	88	93	15.0000
CUGGG	chr17:74734206-74734487(+)$1	281	64	69	15.0000
CUGGG	chr9:37429580-37429835(+)$1	255	87	92	15.0000
CUGGG	chr16:29708175-29708427(+)$1	252	44	49	15.0000
CUGGG	chr17:79891149-79891410(-)$1	261	81	86	15.0000
CUGGG	chr20:61916050-61916350(+)$1	300	176	181	15.0000
CUGGG	chr1:982569-982814(+)$1	245	64	69	15.0000
CUGGG	chr9:35740244-35740514(-)$1	270	8	13	15.0000
CUGGG	chr21:47570320-47570587(-)$1	267	61	66	15.0000
cuggg	chr3:48454464-48454765(-)$1	301	48	53	15.0000
CUGGG	chr20:2819808-2820077(-)$1	269	77	82	15.0000
CUGGG	chr17:62498083-62498344(-)$1	261	51	56	15.0000
CUGGG	chr20:60903371-60903664(-)$1	293	100	105	15.0000
CUGGG	chr19:2227544-2227840(+)$1	296	277	282	15.0000
CUGGG	chr17:73812692-73812952(+)$1	260	122	127	15.0000
CUGGG	chr20:34219844-34220090(-)$1	246	123	128	15.0000
CUGGG	chr16:22336932-22337189(+)$1	257	89	94	15.0000
CUGGG	chr16:710401-710679(+)$1	278	94	99	15.0000
CUGGG	chr9:111681064-111681313(-)$1	249	200	205	15.0000
CUGGG	chr3:10319805-10320093(+)$1	288	61	66	15.0000
CUGGG	chr8:48744367-48744664(-)$1	297	136	141	15.0000
CUGGG	chr16:697263-697525(+)$1	262	53	58	15.0000
CUGGG	chrX:153641656-153641942(+)$1	286	99	104	15.0000
CUGGG	chr3:48717538-48717841(-)$1	303	12	17	15.0000
CUGGG	chr17:80050573-80050838(-)$1	265	92	97	15.0000
CUGGG	chr1:44064201-44064520(+)$1	319	85	90	15.0000
CUGGG	chr11:61111472-61111735(+)$1	263	188	193	15.0000

#otherMatches

#Struct PSSM
FFLLL	chr9:117012690-117012999(+)$1	309	87	92	15.0000
JJJJJ	chr17:7129834-7130138(-)$1	304	86	91	15.0000
eeee:	chr2:187373131-187373374(+)$1	243	12	17	15.0000
fffoo	chr18:690527-690879(-)$1	352	49	54	15.0000
dddhh	chr9:139836032-139836274(-)$1	242	185	190	15.0000
vvvvv	chr14:24108257-24108488(+)$1	231	65	70	15.0000
DDD::	chr2:239342036-239342304(+)$1	268	63	68	15.0000
""ddd	chr9:130706851-130707120(-)$1	269	75	80	15.0000
=====	chr19:39334447-39334744(-)$1	297	103	108	15.0000
!iiii	chr17:79974643-79974917(+)$1	274	118	123	15.0000
a[ddd	chr3:184082598-184082883(+)$1	285	62	67	15.0000
c]ddd	chr17:1674957-1675268(+)$1	311	47	52	15.0000
dddff	chr14:23447538-23447797(-)$1	259	107	112	15.0000
bffff	chr11:67810653-67810959(+)$1	306	100	105	15.0000
llldd	chr4:1805917-1806160(+)$1	243	65	70	15.0000
lleee	chr21:45739780-45740074(+)$1	294	105	110	15.0000
da]cc	chr19:11313284-11313537(-)$1	253	89	94	15.0000
!!eee	chr1:249108693-249108981(-)$1	288	126	131	15.0000
fffff	chr11:46749382-46749647(+)$1	265	42	47	15.0000
22eee	chr11:67074691-67074958(+)$1	267	60	65	15.0000
:ffff	chr20:3028196-3028496(+)$1	300	21	26	15.0000
eeeee	chr17:73237663-73237933(-)$1	270	78	83	15.0000
ddd[d	chr17:79913309-79913534(-)$1	225	9	14	15.0000
dddcc	chr16:57806094-57806355(-)$1	261	82	87	15.0000
55ccc	chr19:16974342-16974600(+)$1	258	105	110	15.0000
A:FFF	chr11:75153517-75153798(-)$1	281	11	16	15.0000
2hhhh	chr3:38416483-38416753(+)$1	270	157	162	15.0000
nnnee	chr3:184098860-184099135(+)$1	275	98	103	15.0000
ddddb	chr19:45573131-45573433(+)$1	302	259	264	15.0000
a[ddd	chr14:74754481-74754736(-)$1	255	38	43	15.0000
:EEEE	chr19:19758229-19758480(-)$1	251	200	205	15.0000
fffff	chr16:30001948-30002222(+)$1	274	89	94	15.0000
b:DDD	chr1:155145267-155145516(-)$1	249	205	210	15.0000
}CCC}	chr14:21464791-21465039(+)$1	248	182	187	15.0000
lllee	chr20:45912271-45912554(-)$1	283	125	130	15.0000
fflll	chr3:48670945-48671235(-)$1	290	31	36	15.0000
!ccc#	chr11:419628-419898(-)$1	270	15	20	15.0000
bb444	chr15:75649133-75649388(-)$1	255	88	93	15.0000
ddddf	chr17:74734206-74734487(+)$1	281	64	69	15.0000
eeeee	chr9:37429580-37429835(+)$1	255	87	92	15.0000
IIIII	chr16:29708175-29708427(+)$1	252	44	49	15.0000
eeeee	chr17:79891149-79891410(-)$1	261	81	86	15.0000
dddnn	chr20:61916050-61916350(+)$1	300	176	181	15.0000
[hhhh	chr1:982569-982814(+)$1	245	64	69	15.0000
KKHHH	chr9:35740244-35740514(-)$1	270	8	13	15.0000
offff	chr21:47570320-47570587(-)$1	267	61	66	15.0000
ccchh	chr3:48454464-48454765(-)$1	301	48	53	15.0000
fffoo	chr20:2819808-2820077(-)$1	269	77	82	15.0000
qqqqe	chr17:62498083-62498344(-)$1	261	51	56	15.0000
""ddd	chr20:60903371-60903664(-)$1	293	100	105	15.0000
d]ddd	chr19:2227544-2227840(+)$1	296	277	282	15.0000
IIIII	chr17:73812692-73812952(+)$1	260	122	127	15.0000
cc333	chr20:34219844-34220090(-)$1	246	123	128	15.0000
=====	chr16:22336932-22337189(+)$1	257	89	94	15.0000
eeeee	chr16:710401-710679(+)$1	278	94	99	15.0000
eeeee	chr9:111681064-111681313(-)$1	249	200	205	15.0000
:FFFF	chr3:10319805-10320093(+)$1	288	61	66	15.0000
eeeee	chr8:48744367-48744664(-)$1	297	136	141	15.0000
hhhhh	chr16:697263-697525(+)$1	262	53	58	15.0000
FFFFB	chrX:153641656-153641942(+)$1	286	99	104	15.0000
EEEEC	chr3:48717538-48717841(-)$1	303	12	17	15.0000
hhhhh	chr17:80050573-80050838(-)$1	265	92	97	15.0000
ggggg	chr1:44064201-44064520(+)$1	319	85	90	15.0000
c[ddd	chr11:61111472-61111735(+)$1	263	188	193	15.0000

#DB
((...	chr9:117012690-117012999(+)$1	1	87	92	15.0000
(((((	chr17:7129834-7130138(-)$1	1	86	91	15.0000
)))).	chr2:187373131-187373374(+)$1	1	12	17	15.0000
(((..	chr18:690527-690879(-)$1	1	49	54	15.0000
)))))	chr9:139836032-139836274(-)$1	1	185	190	15.0000
.....	chr14:24108257-24108488(+)$1	1	65	70	15.0000
(((..	chr2:239342036-239342304(+)$1	1	63	68	15.0000
..(((	chr9:130706851-130707120(-)$1	1	75	80	15.0000
(((((	chr19:39334447-39334744(-)$1	1	103	108	15.0000
.((((	chr17:79974643-79974917(+)$1	1	118	123	15.0000
(.(((	chr3:184082598-184082883(+)$1	1	62	67	15.0000
).)))	chr17:1674957-1675268(+)$1	1	47	52	15.0000
(((((	chr14:23447538-23447797(-)$1	1	107	112	15.0000
)))))	chr11:67810653-67810959(+)$1	1	100	105	15.0000
...))	chr4:1805917-1806160(+)$1	1	65	70	15.0000
..)))	chr21:45739780-45740074(+)$1	1	105	110	15.0000
)).))	chr19:11313284-11313537(-)$1	1	89	94	15.0000
..(((	chr1:249108693-249108981(-)$1	1	126	131	15.0000
(((((	chr11:46749382-46749647(+)$1	1	42	47	15.0000
..)))	chr11:67074691-67074958(+)$1	1	60	65	15.0000
.((((	chr20:3028196-3028496(+)$1	1	21	26	15.0000
)))))	chr17:73237663-73237933(-)$1	1	78	83	15.0000
(((.(	chr17:79913309-79913534(-)$1	1	9	14	15.0000
)))))	chr16:57806094-57806355(-)$1	1	82	87	15.0000
..)))	chr19:16974342-16974600(+)$1	1	105	110	15.0000
(.(((	chr11:75153517-75153798(-)$1	1	11	16	15.0000
.))))	chr3:38416483-38416753(+)$1	1	157	162	15.0000
...))	chr3:184098860-184099135(+)$1	1	98	103	15.0000
)))))	chr19:45573131-45573433(+)$1	1	259	264	15.0000
(.(((	chr14:74754481-74754736(-)$1	1	38	43	15.0000
.))))	chr19:19758229-19758480(-)$1	1	200	205	15.0000
)))))	chr16:30001948-30002222(+)$1	1	89	94	15.0000
).)))	chr1:155145267-155145516(-)$1	1	205	210	15.0000
.))).	chr14:21464791-21465039(+)$1	1	182	187	15.0000
...))	chr20:45912271-45912554(-)$1	1	125	130	15.0000
((...	chr3:48670945-48671235(-)$1	1	31	36	15.0000
.(((.	chr11:419628-419898(-)$1	1	15	20	15.0000
))...	chr15:75649133-75649388(-)$1	1	88	93	15.0000
))))(	chr17:74734206-74734487(+)$1	1	64	69	15.0000
)))))	chr9:37429580-37429835(+)$1	1	87	92	15.0000
(((((	chr16:29708175-29708427(+)$1	1	44	49	15.0000
)))))	chr17:79891149-79891410(-)$1	1	81	86	15.0000
(((..	chr20:61916050-61916350(+)$1	1	176	181	15.0000
.((((	chr1:982569-982814(+)$1	1	64	69	15.0000
..(((	chr9:35740244-35740514(-)$1	1	8	13	15.0000
.))))	chr21:47570320-47570587(-)$1	1	61	66	15.0000
)))((	chr3:48454464-48454765(-)$1	1	48	53	15.0000
(((..	chr20:2819808-2820077(-)$1	1	77	82	15.0000
....)	chr17:62498083-62498344(-)$1	1	51	56	15.0000
..(((	chr20:60903371-60903664(-)$1	1	100	105	15.0000
).)))	chr19:2227544-2227840(+)$1	1	277	282	15.0000
(((((	chr17:73812692-73812952(+)$1	1	122	127	15.0000
))...	chr20:34219844-34220090(-)$1	1	123	128	15.0000
(((((	chr16:22336932-22337189(+)$1	1	89	94	15.0000
(((((	chr16:710401-710679(+)$1	1	94	99	15.0000
(((((	chr9:111681064-111681313(-)$1	1	200	205	15.0000
.((((	chr3:10319805-10320093(+)$1	1	61	66	15.0000
)))))	chr8:48744367-48744664(-)$1	1	136	141	15.0000
)))))	chr16:697263-697525(+)$1	1	53	58	15.0000
(((((	chrX:153641656-153641942(+)$1	1	99	104	15.0000
(((((	chr3:48717538-48717841(-)$1	1	12	17	15.0000
(((((	chr17:80050573-80050838(-)$1	1	92	97	15.0000
(((((	chr1:44064201-44064520(+)$1	1	85	90	15.0000
(.(((	chr11:61111472-61111735(+)$1	1	188	193	15.0000

#PSSM
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	

#score	960.0
#seq	64
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_transcript_m3_run1.nuc.txt

#NT
agaaguuucucugaacguguagagcaccgaaaaccacgaggaagagagguagcguuuucuccugaacgugaagccggc	chr17:19093390-19093627(-)$1	237	111	189	231.5000
agaaguuucucugaacguguagagcaccgaaaaccacgaggaagagagguagcguuuucuccugagcgugaagccggc	chr17:19091288-19091507(+)$1	219	82	160	231.5000
agaaguuucucugaacguguagagcaccgaaaaccacgaggaagagagguagcguuuucuccugagcgugaagccggc	chr17:19091320-19091544(+)$1	224	50	128	231.5000
agaaguuucucugaacguguagagcaccgaaaaccacgaggaagagagguagcguuuucuccugaacgugaagccggc	chr17:19093343-19093553(-)$1	210	37	115	231.5000
agaaguuucucugaacguguagagcaccgaaaaccacgaggaagagagguagcguuuucuccugaacgugaagccggc	chr17:19093354-19093577(-)$1	223	61	139	231.5000
agaaguuucucugaacguguagagcaccgaaaaccacgaggaagagagguagcguuuucuccugagcgugaagccggc	chr17:19091307-19091512(+)$1	205	63	141	231.5000
agaaguuucucugaacguguagagcaccgaaaaccacgaggaagagagguagcguuuucuccugagcgugaagccggc	chr17:19091312-19091520(+)$1	208	58	136	231.5000

#otherMatches

#Struct PSSM
ffffff]hhhhhhhh]ffffff::::::::::::dddddddd[eeeeeooooooeeeeedddd333dddd::::IIII	chr17:19093377-19093590(-)$1	213	74	152	231.5000
ffffff]hhhhhhhh]ffffff::::::::::::dddddddd[eeeeeooooooeeeeedddd333dddd::::IIII	chr17:19093390-19093627(-)$1	237	111	189	231.5000
ffffff]hhhhhhhh]ffffff::::::::::::dddddddd[eeeeeooooooeeeeedddd333dddd::::IIII	chr17:19091288-19091507(+)$1	219	82	160	231.5000
ffffff]hhhhhhhh]ffffff:bbccc$$$$$bbmmmmbb666666ccc]bbJJJJJJJJJJbb[ccc[bb"""ddd	chr17:19091320-19091544(+)$1	224	50	128	231.5000
ffffff]hhhhhhhh]eeeee:BB{CCC::::ccc[aqqqqqqqqa]ccc:JJJJJJJJJJJJbb[ccc[bb"""ddd	chr17:19093343-19093553(-)$1	210	37	115	231.5000
ffffff]hhhhhhhh]ffffff:bbccc$$$$$bbmmmmbb666666ccc]bbJJJJJJJJJJbb[ccc[bb"""ddd	chr17:19093354-19093577(-)$1	223	61	139	231.5000
ffffff]hhhhhhhh]ffffff:EEEEE:::::CCCLLLCCC{FFFFFF{DDDDBB{BB::::::bbnnnnnbb:ddd	chr17:19091307-19091512(+)$1	205	63	141	231.5000
ffffff]hhhhhhhh]ffffff::::::::::::dddddddd[eeeeeooooooeeeeedddd333dddd::::IIII	chr17:19091312-19091520(+)$1	208	58	136	231.5000

#DB
)))))).)))))))).))))))............((((((((.(((((......)))))))))...))))....))))	chr17:19093377-19093590(-)$1	1	74	152	231.5000
)))))).)))))))).))))))............((((((((.(((((......)))))))))...))))....))))	chr17:19093390-19093627(-)$1	1	111	189	231.5000
)))))).)))))))).))))))............((((((((.(((((......)))))))))...))))....))))	chr17:19091288-19091507(+)$1	1	82	160	231.5000
)))))).)))))))).)))))).(((((.....((....))......))).))((((((((((((.(((.((...(((	chr17:19091320-19091544(+)$1	1	50	128	231.5000
)))))).)))))))).))))).((.(((....(((.(........).))).((((((((((((((.(((.((...(((	chr17:19093343-19093553(-)$1	1	37	115	231.5000
)))))).)))))))).)))))).(((((.....((....))......))).))((((((((((((.(((.((...(((	chr17:19093354-19093577(-)$1	1	61	139	231.5000
)))))).)))))))).)))))).))))).....(((...(((.((((((.((((((.((......((.....)).(((	chr17:19091307-19091512(+)$1	1	63	141	231.5000
)))))).)))))))).))))))............((((((((.(((((......)))))))))...))))....))))	chr17:19091312-19091520(+)$1	1	58	136	231.5000

#PSSM
a : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 0.50	g : 0.50	
c : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	

#score	1852.0
#seq	8
#width	78
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF854NXI_HNRNPU_UTR_m2_run1.nuc.txt

#NT
GCCUGGAGAGCUGGCGGGGGUGUGGGGACCGCGAUGUUGGG	chr6:52227143-52227425(+)$1	282	230	271	46.7500
ggugguggugguagggggagaaggaggagcuggaggagggc	chr6:86352546-86352826(-)$1	280	3	44	61.7500
GUUUGGGCAGCCAGAGGGAGGUGAGGGUGCUGGAGCGGGGG	chr19:56146707-56146980(+)$1	273	102	143	59.2500

#otherMatches

#Struct PSSM
EEEELLLCCC:AKKDDDD{HHHHHHHHQQQQQQQQBB::::	chr3:49045342-49045634(+)$1	292	10	51	64.2500
ZCCCZZZEEEEE~~~~JJJJJJJJJJJJBB}HHHHHHHH}B	chr6:52227143-52227425(+)$1	282	230	271	46.7500
GGGG{A{A{CCC{A{FFFFFFMMMMAKKCCC{AKKA:::bb	chr6:86352546-86352826(-)$1	280	3	44	61.7500
dddd[dddd[bb!!aooooooa22bb]dddd]ddddhhhhh	chr19:56146707-56146980(+)$1	273	102	143	59.2500

#DB
((((...(((.(..((((.((((((((........((....	chr3:49045342-49045634(+)$1	1	10	51	64.2500
.)))...)))))....)))))))))))))).)))))))).)	chr6:52227143-52227425(+)$1	1	230	271	46.7500
((((.(.(.(((.(.((((((....(..(((.(..(...((	chr6:86352546-86352826(-)$1	1	3	44	61.7500
((((.((((.((..(......)..)).)))).))))(((((	chr19:56146707-56146980(+)$1	1	102	143	59.2500

#PSSM
G : 0.75	g : 0.25	
C : 0.50	g : 0.25	U : 0.25	
U : 0.50	C : 0.25	u : 0.25	
U : 0.50	G : 0.25	g : 0.25	
G : 0.75	g : 0.25	
G : 0.75	u : 0.25	
G : 0.50	A : 0.25	g : 0.25	
G : 0.50	g : 0.25	C : 0.25	
A : 0.50	G : 0.25	u : 0.25	
G : 0.75	g : 0.25	
C : 0.50	G : 0.25	g : 0.25	
C : 0.50	U : 0.25	u : 0.25	
G : 0.50	a : 0.25	A : 0.25	
G : 0.75	g : 0.25	
A : 0.50	C : 0.25	g : 0.25	
G : 0.75	g : 0.25	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.25	A : 0.25	
g : 0.50	G : 0.50	
g : 0.25	U : 0.25	a : 0.25	G : 0.25	
a : 0.50	G : 0.25	U : 0.25	
g : 0.50	U : 0.25	G : 0.25	
g : 0.50	G : 0.25	A : 0.25	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.25	U : 0.25	
g : 0.50	C : 0.25	G : 0.25	
C : 0.50	g : 0.25	c : 0.25	
a : 0.25	G : 0.25	u : 0.25	U : 0.25	
g : 0.50	C : 0.25	G : 0.25	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	U : 0.25	G : 0.25	
g : 0.50	G : 0.25	C : 0.25	
c : 0.25	U : 0.25	a : 0.25	G : 0.25	
g : 0.50	U : 0.25	G : 0.25	
g : 0.50	G : 0.50	
G : 0.50	a : 0.25	g : 0.25	
G : 0.50	g : 0.25	c : 0.25	

#score	232.0
#seq	4
#width	41
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_UTR_m3_run1.nuc.txt

#NT
CUU	chr19:49949772-49950052(-)$1	280	4	7	8.9999
CUU	chr10:5488552-5488844(+)$1	292	0	3	8.9999
CUU	chr18:47018726-47018932(-)$1	206	19	22	8.9999
CUU	chr21:33040788-33041044(+)$1	256	15	18	8.9999
CUU	chr18:43667235-43667544(-)$1	309	13	16	8.9999
CUU	chr19:48830677-48830933(+)$1	256	12	15	8.9999
CUU	chr12:50158178-50158416(+)$1	238	77	80	8.9999
CUU	chr16:75611116-75611410(+)$1	294	0	3	8.9999
CUU	chrX:77154869-77155133(+)$1	264	108	111	8.9999
CUU	chr11:75114993-75115255(+)$1	262	17	20	8.9999
CUU	chr7:93633446-93633751(-)$1	305	12	15	8.9999
CUU	chr11:64084459-64084719(-)$1	260	89	92	8.9999
CUU	chr4:76570500-76570926(-)$1	426	24	27	8.9999
CUU	chr1:111992035-111992304(+)$1	269	38	41	8.9999
CUU	chr2:32502888-32503290(+)$1	402	28	31	8.9999
CUU	chr10:126097355-126097612(-)$1	257	11	14	8.9999
CUU	chr1:46769273-46769542(+)$1	269	50	53	8.9999
CUU	chr17:73042918-73043161(-)$1	243	51	54	8.9999
CUU	chr18:43678036-43678297(-)$1	261	12	15	8.9999
CUU	chr19:49507434-49507719(+)$1	285	14	17	8.9999
CUU	chr11:764229-764530(+)$1	301	46	49	8.9999
CUU	chr6:114291962-114292211(-)$1	249	11	14	8.9999
CUU	chr18:47018732-47018946(-)$1	214	0	3	8.9999
CUU	chr19:19638715-19638930(+)$1	215	141	144	8.9999
CUU	chr3:53259768-53260044(-)$1	276	14	17	8.9999
CUU	chr1:154192845-154193096(-)$1	251	33	36	8.9999
CUU	chr12:6645651-6645857(+)$1	206	3	6	8.9999
CUU	chr11:755869-756102(+)$1	233	81	84	8.9999
CUU	chr5:159849233-159849474(+)$1	241	24	27	8.9999
CUU	chr19:12907829-12908084(-)$1	255	5	8	8.9999
CUU	chr22:24236606-24236868(+)$1	262	44	47	8.9999
CUU	chr11:18422447-18422657(+)$1	210	10	13	8.9999
CUU	chr7:155089512-155089760(+)$1	248	101	104	8.9999
CUU	chr11:61070046-61070324(-)$1	278	82	85	8.9999
CUU	chr12:49666503-49666737(+)$1	234	12	15	8.9999
CUU	chr12:131357505-131357756(+)$1	251	46	49	8.9999
CUU	chr19:39327226-39327510(-)$1	284	22	25	8.9999
CUU	chr12:57624599-57624872(+)$1	273	246	249	8.9999
CUU	chr19:19638824-19639090(+)$1	266	32	35	8.9999
CUU	chr5:85913659-85913889(+)$1	230	55	58	8.9999
CUU	chr22:38072927-38073165(+)$1	238	7	10	8.9999
CUU	chr3:150263998-150264266(-)$1	268	29	32	8.9999
CUU	chr14:100835341-100835615(-)$1	274	0	3	8.9999
CUU	chr15:44085114-44085350(+)$1	236	38	41	8.9999
CUU	chr6:26199038-26199255(-)$1	217	187	190	8.9999
CUU	chr2:114714941-114715198(+)$1	257	97	100	8.9999
CUU	chr16:84812590-84812841(+)$1	251	132	135	8.9999
CUU	chr9:19380091-19380333(-)$1	242	21	24	8.9999
CUU	chr8:146015723-146015955(-)$1	232	137	140	8.9999
CUU	chr6:26200072-26200311(+)$1	239	104	107	8.9999
CUU	chr20:2444385-2444625(-)$1	240	4	7	8.9999
CUU	chr14:50050242-50050494(-)$1	252	31	34	8.9999
CUU	chr7:99055791-99056085(-)$1	294	19	22	8.9999
CUU	chr15:72492740-72492991(-)$1	251	94	97	8.9999
CUU	chr16:21991782-21992107(+)$1	325	46	49	8.9999
CUU	chr14:104378903-104379132(-)$1	229	16	19	8.9999
CUU	chr19:40953796-40954048(-)$1	252	21	24	8.9999
CUU	chr7:5567580-5567792(-)$1	212	7	10	8.9999
CUU	chr6:86352565-86352831(-)$1	266	200	203	8.9999
CUU	chr12:58142889-58143201(-)$1	312	10	13	8.9999
CUU	chr6:49574461-49574667(-)$1	206	160	163	8.9999
CUU	chr11:61077202-61077527(-)$1	325	97	100	8.9999
CUU	chr7:93633409-93633646(-)$1	237	94	97	8.9999
CUU	chr17:7476053-7476283(+)$1	230	161	164	8.9999
CUU	chr7:54819974-54820214(-)$1	240	3	6	8.9999
cuu	chr14:20942529-20942802(+)$1	273	37	40	8.9999
CUU	chr17:39847029-39847269(+)$1	240	52	55	8.9999
CUU	chr11:18426971-18427219(+)$1	248	26	29	8.9999
CUU	chr22:22221655-22221915(-)$1	260	46	49	8.9999
CUU	chr3:197677706-197677931(+)$1	225	19	22	8.9999
CUU	chr1:17766017-17766251(-)$1	234	18	21	8.9999
CUU	chr15:72491916-72492168(-)$1	252	32	35	8.9999
CUU	chr17:36918565-36918776(+)$1	211	12	15	8.9999
CUU	chr12:54741683-54741935(+)$1	252	57	60	8.9999
CUU	chr5:133502760-133503035(-)$1	275	20	23	8.9999
CUU	chr11:61732064-61732317(-)$1	253	31	34	8.9999
CUU	chr12:96252642-96252924(+)$1	282	29	32	8.9999
CUU	chr12:57892102-57892397(+)$1	295	17	20	8.9999
CUU	chr14:78174341-78174603(+)$1	262	100	103	8.9999
CUU	chr11:5289543-5289773(-)$1	230	80	83	8.9999
CUU	chr2:70516384-70516602(-)$1	218	20	23	8.9999
CUU	chr19:5894613-5894898(-)$1	285	70	73	8.9999
CUU	chr17:4701203-4701466(+)$1	263	86	89	8.9999
CUU	chr11:73692420-73692669(-)$1	249	79	82	8.9999
CUU	chr3:53269026-53269283(-)$1	257	18	21	8.9999
CUU	chr19:36149445-36149724(+)$1	279	40	43	8.9999
CUU	chr11:85779841-85780156(-)$1	315	57	60	8.9999
CUU	chr17:7479777-7480032(+)$1	255	214	217	8.9999
CUU	chr11:118894007-118894251(+)$1	244	18	21	8.9999
CUU	chr16:2301274-2301530(-)$1	256	92	95	8.9999
CUU	chr11:61077687-61077933(-)$1	246	108	111	8.9999
CUU	chr3:48646904-48647168(-)$1	264	79	82	8.9999
CUU	chr7:97482516-97482748(-)$1	232	32	35	8.9999

#otherMatches

#Struct PSSM
c33	chrX:48433949-48434156(+)$1	207	54	57	8.9999
:::	chr19:49949772-49950052(-)$1	280	4	7	8.9999
EEE	chr10:5488552-5488844(+)$1	292	0	3	8.9999
amm	chr18:47018726-47018932(-)$1	206	19	22	8.9999
E{D	chr21:33040788-33041044(+)$1	256	15	18	8.9999
KKA	chr18:43667235-43667544(-)$1	309	13	16	8.9999
fff	chr19:48830677-48830933(+)$1	256	12	15	8.9999
fff	chr12:50158178-50158416(+)$1	238	77	80	8.9999
:::	chr16:75611116-75611410(+)$1	294	0	3	8.9999
:::	chrX:77154869-77155133(+)$1	264	108	111	8.9999
d::	chr11:75114993-75115255(+)$1	262	17	20	8.9999
LLL	chr7:93633446-93633751(-)$1	305	12	15	8.9999
d!!	chr11:64084459-64084719(-)$1	260	89	92	8.9999
iii	chr4:76570500-76570926(-)$1	426	24	27	8.9999
EEE	chr1:111992035-111992304(+)$1	269	38	41	8.9999
ggg	chr2:32502888-32503290(+)$1	402	28	31	8.9999
FFF	chr10:126097355-126097612(-)$1	257	11	14	8.9999
::f	chr1:46769273-46769542(+)$1	269	50	53	8.9999
ddd	chr17:73042918-73043161(-)$1	243	51	54	8.9999
KKA	chr18:43678036-43678297(-)$1	261	12	15	8.9999
ff!	chr19:49507434-49507719(+)$1	285	14	17	8.9999
c]f	chr11:764229-764530(+)$1	301	46	49	8.9999
DKK	chr6:114291962-114292211(-)$1	249	11	14	8.9999
:::	chr18:47018732-47018946(-)$1	214	0	3	8.9999
EE}	chr19:19638715-19638930(+)$1	215	141	144	8.9999
mmb	chr3:53259768-53260044(-)$1	276	14	17	8.9999
ddd	chr1:154192845-154193096(-)$1	251	33	36	8.9999
::I	chr12:6645651-6645857(+)$1	206	3	6	8.9999
ccc	chr11:755869-756102(+)$1	233	81	84	8.9999
f::	chr5:159849233-159849474(+)$1	241	24	27	8.9999
C:d	chr19:12907829-12908084(-)$1	255	5	8	8.9999
DEE	chr22:24236606-24236868(+)$1	262	44	47	8.9999
CCK	chr11:18422447-18422657(+)$1	210	10	13	8.9999
:::	chr7:155089512-155089760(+)$1	248	101	104	8.9999
fff	chr11:61070046-61070324(-)$1	278	82	85	8.9999
cco	chr12:49666503-49666737(+)$1	234	12	15	8.9999
JJJ	chr12:131357505-131357756(+)$1	251	46	49	8.9999
ccc	chr19:39327226-39327510(-)$1	284	22	25	8.9999
lle	chr12:57624599-57624872(+)$1	273	246	249	8.9999
doo	chr19:19638824-19639090(+)$1	266	32	35	8.9999
coo	chr5:85913659-85913889(+)$1	230	55	58	8.9999
FFF	chr22:38072927-38073165(+)$1	238	7	10	8.9999
b!!	chr3:150263998-150264266(-)$1	268	29	32	8.9999
:::	chr14:100835341-100835615(-)$1	274	0	3	8.9999
C{B	chr15:44085114-44085350(+)$1	236	38	41	8.9999
fff	chr6:26199038-26199255(-)$1	217	187	190	8.9999
===	chr2:114714941-114715198(+)$1	257	97	100	8.9999
b33	chr16:84812590-84812841(+)$1	251	132	135	8.9999
eee	chr9:19380091-19380333(-)$1	242	21	24	8.9999
b55	chr8:146015723-146015955(-)$1	232	137	140	8.9999
:::	chr6:26200072-26200311(+)$1	239	104	107	8.9999
DDD	chr20:2444385-2444625(-)$1	240	4	7	8.9999
:::	chr14:50050242-50050494(-)$1	252	31	34	8.9999
J::	chr7:99055791-99056085(-)$1	294	19	22	8.9999
!cc	chr15:72492740-72492991(-)$1	251	94	97	8.9999
WWW	chr16:21991782-21992107(+)$1	325	46	49	8.9999
ooo	chr14:104378903-104379132(-)$1	229	16	19	8.9999
mii	chr19:40953796-40954048(-)$1	252	21	24	8.9999
eee	chr7:5567580-5567792(-)$1	212	7	10	8.9999
HHH	chr6:86352565-86352831(-)$1	266	200	203	8.9999
ALL	chr12:58142889-58143201(-)$1	312	10	13	8.9999
lee	chr6:49574461-49574667(-)$1	206	160	163	8.9999
:::	chr11:61077202-61077527(-)$1	325	97	100	8.9999
eee	chr7:93633409-93633646(-)$1	237	94	97	8.9999
eee	chr17:7476053-7476283(+)$1	230	161	164	8.9999
GGG	chr7:54819974-54820214(-)$1	240	3	6	8.9999
"""	chr14:20942529-20942802(+)$1	273	37	40	8.9999
MMM	chr17:39847029-39847269(+)$1	240	52	55	8.9999
ddd	chr11:18426971-18427219(+)$1	248	26	29	8.9999
ddd	chr22:22221655-22221915(-)$1	260	46	49	8.9999
EEM	chr3:197677706-197677931(+)$1	225	19	22	8.9999
ooo	chr1:17766017-17766251(-)$1	234	18	21	8.9999
:dd	chr15:72491916-72492168(-)$1	252	32	35	8.9999
dd[	chr17:36918565-36918776(+)$1	211	12	15	8.9999
444	chr12:54741683-54741935(+)$1	252	57	60	8.9999
eee	chr5:133502760-133503035(-)$1	275	20	23	8.9999
E{C	chr11:61732064-61732317(-)$1	253	31	34	8.9999
[ee	chr12:96252642-96252924(+)$1	282	29	32	8.9999
mmb	chr12:57892102-57892397(+)$1	295	17	20	8.9999
ff#	chr14:78174341-78174603(+)$1	262	100	103	8.9999
'''	chr11:5289543-5289773(-)$1	230	80	83	8.9999
^^^	chr2:70516384-70516602(-)$1	218	20	23	8.9999
sss	chr19:5894613-5894898(-)$1	285	70	73	8.9999
eee	chr17:4701203-4701466(+)$1	263	86	89	8.9999
:::	chr11:73692420-73692669(-)$1	249	79	82	8.9999
CDD	chr3:53269026-53269283(-)$1	257	18	21	8.9999
ggg	chr19:36149445-36149724(+)$1	279	40	43	8.9999
JJJ	chr11:85779841-85780156(-)$1	315	57	60	8.9999
fff	chr17:7479777-7480032(+)$1	255	214	217	8.9999
ggg	chr11:118894007-118894251(+)$1	244	18	21	8.9999
FFF	chr16:2301274-2301530(-)$1	256	92	95	8.9999
eee	chr11:61077687-61077933(-)$1	246	108	111	8.9999
cc[	chr3:48646904-48647168(-)$1	264	79	82	8.9999
)))	chr7:97482516-97482748(-)$1	232	32	35	8.9999

#DB
)..	chrX:48433949-48434156(+)$1	1	54	57	8.9999
...	chr19:49949772-49950052(-)$1	1	4	7	8.9999
(((	chr10:5488552-5488844(+)$1	1	0	3	8.9999
(..	chr18:47018726-47018932(-)$1	1	19	22	8.9999
(.(	chr21:33040788-33041044(+)$1	1	15	18	8.9999
..(	chr18:43667235-43667544(-)$1	1	13	16	8.9999
(((	chr19:48830677-48830933(+)$1	1	12	15	8.9999
)))	chr12:50158178-50158416(+)$1	1	77	80	8.9999
...	chr16:75611116-75611410(+)$1	1	0	3	8.9999
...	chrX:77154869-77155133(+)$1	1	108	111	8.9999
)..	chr11:75114993-75115255(+)$1	1	17	20	8.9999
...	chr7:93633446-93633751(-)$1	1	12	15	8.9999
(..	chr11:64084459-64084719(-)$1	1	89	92	8.9999
(((	chr4:76570500-76570926(-)$1	1	24	27	8.9999
(((	chr1:111992035-111992304(+)$1	1	38	41	8.9999
)))	chr2:32502888-32503290(+)$1	1	28	31	8.9999
(((	chr10:126097355-126097612(-)$1	1	11	14	8.9999
..(	chr1:46769273-46769542(+)$1	1	50	53	8.9999
)))	chr17:73042918-73043161(-)$1	1	51	54	8.9999
..(	chr18:43678036-43678297(-)$1	1	12	15	8.9999
((.	chr19:49507434-49507719(+)$1	1	14	17	8.9999
).)	chr11:764229-764530(+)$1	1	46	49	8.9999
(..	chr6:114291962-114292211(-)$1	1	11	14	8.9999
...	chr18:47018732-47018946(-)$1	1	0	3	8.9999
)).	chr19:19638715-19638930(+)$1	1	141	144	8.9999
..)	chr3:53259768-53260044(-)$1	1	14	17	8.9999
)))	chr1:154192845-154193096(-)$1	1	33	36	8.9999
..(	chr12:6645651-6645857(+)$1	1	3	6	8.9999
(((	chr11:755869-756102(+)$1	1	81	84	8.9999
)..	chr5:159849233-159849474(+)$1	1	24	27	8.9999
(.(	chr19:12907829-12908084(-)$1	1	5	8	8.9999
(((	chr22:24236606-24236868(+)$1	1	44	47	8.9999
((.	chr11:18422447-18422657(+)$1	1	10	13	8.9999
...	chr7:155089512-155089760(+)$1	1	101	104	8.9999
)))	chr11:61070046-61070324(-)$1	1	82	85	8.9999
((.	chr12:49666503-49666737(+)$1	1	12	15	8.9999
(((	chr12:131357505-131357756(+)$1	1	46	49	8.9999
(((	chr19:39327226-39327510(-)$1	1	22	25	8.9999
..)	chr12:57624599-57624872(+)$1	1	246	249	8.9999
(..	chr19:19638824-19639090(+)$1	1	32	35	8.9999
(..	chr5:85913659-85913889(+)$1	1	55	58	8.9999
(((	chr22:38072927-38073165(+)$1	1	7	10	8.9999
(..	chr3:150263998-150264266(-)$1	1	29	32	8.9999
...	chr14:100835341-100835615(-)$1	1	0	3	8.9999
(.(	chr15:44085114-44085350(+)$1	1	38	41	8.9999
)))	chr6:26199038-26199255(-)$1	1	187	190	8.9999
)))	chr2:114714941-114715198(+)$1	1	97	100	8.9999
)..	chr16:84812590-84812841(+)$1	1	132	135	8.9999
(((	chr9:19380091-19380333(-)$1	1	21	24	8.9999
)..	chr8:146015723-146015955(-)$1	1	137	140	8.9999
...	chr6:26200072-26200311(+)$1	1	104	107	8.9999
(((	chr20:2444385-2444625(-)$1	1	4	7	8.9999
...	chr14:50050242-50050494(-)$1	1	31	34	8.9999
(..	chr7:99055791-99056085(-)$1	1	19	22	8.9999
.((	chr15:72492740-72492991(-)$1	1	94	97	8.9999
...	chr16:21991782-21992107(+)$1	1	46	49	8.9999
...	chr14:104378903-104379132(-)$1	1	16	19	8.9999
.))	chr19:40953796-40954048(-)$1	1	21	24	8.9999
(((	chr7:5567580-5567792(-)$1	1	7	10	8.9999
)))	chr6:86352565-86352831(-)$1	1	200	203	8.9999
(..	chr12:58142889-58143201(-)$1	1	10	13	8.9999
.))	chr6:49574461-49574667(-)$1	1	160	163	8.9999
...	chr11:61077202-61077527(-)$1	1	97	100	8.9999
(((	chr7:93633409-93633646(-)$1	1	94	97	8.9999
)))	chr17:7476053-7476283(+)$1	1	161	164	8.9999
(((	chr7:54819974-54820214(-)$1	1	3	6	8.9999
...	chr14:20942529-20942802(+)$1	1	37	40	8.9999
...	chr17:39847029-39847269(+)$1	1	52	55	8.9999
(((	chr11:18426971-18427219(+)$1	1	26	29	8.9999
(((	chr22:22221655-22221915(-)$1	1	46	49	8.9999
((.	chr3:197677706-197677931(+)$1	1	19	22	8.9999
...	chr1:17766017-17766251(-)$1	1	18	21	8.9999
.((	chr15:72491916-72492168(-)$1	1	32	35	8.9999
((.	chr17:36918565-36918776(+)$1	1	12	15	8.9999
...	chr12:54741683-54741935(+)$1	1	57	60	8.9999
(((	chr5:133502760-133503035(-)$1	1	20	23	8.9999
(.(	chr11:61732064-61732317(-)$1	1	31	34	8.9999
.((	chr12:96252642-96252924(+)$1	1	29	32	8.9999
..)	chr12:57892102-57892397(+)$1	1	17	20	8.9999
((.	chr14:78174341-78174603(+)$1	1	100	103	8.9999
...	chr11:5289543-5289773(-)$1	1	80	83	8.9999
...	chr2:70516384-70516602(-)$1	1	20	23	8.9999
...	chr19:5894613-5894898(-)$1	1	70	73	8.9999
)))	chr17:4701203-4701466(+)$1	1	86	89	8.9999
...	chr11:73692420-73692669(-)$1	1	79	82	8.9999
(((	chr3:53269026-53269283(-)$1	1	18	21	8.9999
)))	chr19:36149445-36149724(+)$1	1	40	43	8.9999
(((	chr11:85779841-85780156(-)$1	1	57	60	8.9999
(((	chr17:7479777-7480032(+)$1	1	214	217	8.9999
)))	chr11:118894007-118894251(+)$1	1	18	21	8.9999
(((	chr16:2301274-2301530(-)$1	1	92	95	8.9999
(((	chr11:61077687-61077933(-)$1	1	108	111	8.9999
((.	chr3:48646904-48647168(-)$1	1	79	82	8.9999
...	chr7:97482516-97482748(-)$1	1	32	35	8.9999

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
U : 0.98	u : 0.01	

#score	845.9999999999998
#seq	94
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_CDS_m1_run2.nuc.txt

#NT
Guuuuuuuu	chr11:9459382-9459621(+)$1	239	209	218	15.3606
CUUUUACUU	chr2:96958953-96959169(-)$1	216	98	107	12.1639
CUUUUUCCU	chr2:61723953-61724241(-)$1	288	17	26	11.7540
CAUUUGUUU	chr1:39903368-39903684(+)$1	316	69	78	12.0819
AUUUUUUUU	chr8:95518764-95519046(-)$1	282	76	85	15.2786
CUAAUUUUU	chr1:12353563-12353857(+)$1	294	6	15	11.3442
CUGGUUUUU	chrX:53603808-53604094(-)$1	286	39	48	12.1639
CUUUUUUUU	chrX:123184870-123185114(+)$1	244	78	87	19.2131
CUUUUCUGU	chr9:95021123-95021378(-)$1	255	67	76	11.6721
cguuuuuuu	chr8:95507864-95508191(-)$1	327	307	316	15.3606
CUUGUUUCU	chr21:47678779-47679104(-)$1	325	171	180	12.3278
AUUUUUUUU	chr5:32363962-32364253(-)$1	291	44	53	15.2786
CUGUUUCUU	chr17:26955331-26955623(-)$1	292	35	44	11.5901
CUCCUUUUU	chr8:48734214-48734432(-)$1	218	7	16	11.3442
CGUUCUUUU	chr12:939113-939413(+)$1	300	38	47	12.4918
CUUUAUCUU	chr1:220151845-220152064(-)$1	219	190	199	12.4918
CUUUGUUAU	chr3:184044590-184044848(+)$1	258	199	208	12.0819
CUUGCUUUU	chrX:53615269-53615491(-)$1	222	125	134	13.3114
CUUUUUAUU	chr12:64823771-64823997(+)$1	226	96	105	15.3606
CUUGGUUUU	chr3:184040552-184040830(+)$1	278	112	121	13.0655
CUUAUGUUU	chr15:40280082-40280368(+)$1	286	254	263	12.0000
CUUUGAUUU	chr11:62293944-62294185(-)$1	241	45	54	12.6557
AUUUUUUCU	chr17:57759608-57759872(+)$1	264	0	9	11.4262
CUUUUUUUU	chr8:95531368-95531696(-)$1	328	125	134	19.2131
guuuuuuuu	chr14:102449813-102450045(+)$1	232	195	204	15.3606
CAUUUUGUU	chr1:220208204-220208454(-)$1	250	211	220	11.7540
CUUUUUUUU	chrX:123184918-123185148(+)$1	230	30	39	19.2131
CAUUUGUUU	chr3:184049446-184049694(+)$1	248	49	58	12.0819
CUUUUGUUU	chr17:57750957-57751207(+)$1	250	28	37	15.6065
GUUUUUUUU	chr14:102476080-102476340(+)$1	260	49	58	15.3606
CAUUUUUUU	chr2:232320625-232320905(-)$1	280	38	47	15.6885
CUUUUCUUU	chr16:18851023-18851351(-)$1	328	49	58	15.5245
GUUGUUUUU	chr1:115269508-115269792(-)$1	284	17	26	12.3278
CUUUUUUAU	chr1:19505492-19505732(-)$1	240	230	239	15.1967
CUUGUAUUU	chr18:18608636-18608997(-)$1	361	53	62	12.7377
CUUUCUUCU	chr7:2402604-2402862(+)$1	258	87	96	12.4918
CUUGUUCUU	chr3:47162756-47163025(-)$1	269	153	162	12.5737
CUUUAUCUU	chr1:220151790-220152022(-)$1	232	148	157	12.4918
CAUUUUGUU	chr1:19482721-19483004(-)$1	283	61	70	11.7540
CUUUCUUUU	chr8:48798596-48798808(-)$1	212	85	94	16.3442
cauuuauuU	chr17:57744057-57744292(+)$1	235	81	90	12.2459
CUUGUUUGU	chr17:57743790-57744039(+)$1	249	31	40	12.3278
AAUUUUUUU	chr1:52289257-52289509(-)$1	252	29	38	11.7540
CUUUCUUUC	chr17:1577821-1578071(-)$1	250	85	94	11.5081
CUUUCUUUU	chr21:38528855-38529151(+)$1	296	119	128	16.3442
CUUUCUUGU	chr7:138264159-138264378(+)$1	219	80	89	12.4918
CUCUUUUUU	chr1:154558127-154558395(-)$1	268	37	46	15.1147
CUUUAAUUU	chr17:38560943-38561167(-)$1	224	19	28	12.6557
CUUGUUUUU	chr17:7404864-7405145(+)$1	281	193	202	16.1803
CUUUCUUUU	chr1:115273062-115273315(-)$1	253	228	237	16.3442
CUUUAUUUU	chr17:45738384-45738616(+)$1	232	77	86	16.0983
CUUUUCUUU	chr8:48719598-48719815(-)$1	217	188	197	15.5245
CUGUUAUUU	chrX:53610694-53610976(-)$1	282	78	87	11.7540
CUUUGUAUU	chr2:44187650-44187874(-)$1	224	178	187	12.2459
CUUUGUAUU	chr2:44187598-44187850(-)$1	252	154	163	12.2459
CUUUAUUUU	chr16:58568074-58568366(-)$1	292	43	52	16.0983
CUCAUUUUU	chr8:48719647-48719917(-)$1	270	11	20	11.5081
GUUGUUUUU	chr1:52280125-52280362(-)$1	237	16	25	12.3278
CGUUUUUUU	chr8:48842312-48842514(-)$1	202	133	142	15.3606
CUGUUUUGU	chr8:48801030-48801283(-)$1	253	52	61	11.3442

#otherMatches

#Struct PSSM
b:::IIIII	chr14:102445693-102445929(+)$1	236	92	101	15.1967
oooo=====	chr11:9459382-9459621(+)$1	239	209	218	15.3606
::::eeeee	chr2:96958953-96959169(-)$1	216	98	107	12.1639
D{EEEEE::	chr2:61723953-61724241(-)$1	288	17	26	11.7540
iii!!iiii	chr1:39903368-39903684(+)$1	316	69	78	12.0819
oooffffff	chr8:95518764-95519046(-)$1	282	76	85	15.2786
:::::::::	chr1:12353563-12353857(+)$1	294	6	15	11.3442
##ggggggg	chrX:53603808-53604094(-)$1	286	39	48	12.1639
ggg^^^^^^	chrX:123184870-123185114(+)$1	244	78	87	19.2131
E::::::::	chr9:95021123-95021378(-)$1	255	67	76	11.6721
|FFFFFFZZ	chr8:95507864-95508191(-)$1	327	307	316	15.3606
:dddd"""b	chr21:47678779-47679104(-)$1	325	171	180	12.3278
doooooodd	chr5:32363962-32364253(-)$1	291	44	53	15.2786
CCCA{CCC:	chr17:26955331-26955623(-)$1	292	35	44	11.5901
:::::gggg	chr8:48734214-48734432(-)$1	218	7	16	11.3442
#bb[ddddo	chr12:939113-939413(+)$1	300	38	47	12.4918
dd>>>>>>>	chr1:220151845-220152064(-)$1	219	190	199	12.4918
iiiiii333	chr3:184044590-184044848(+)$1	258	199	208	12.0819
========w	chrX:53615269-53615491(-)$1	222	125	134	13.3114
JJJJJJ:::	chr12:64823771-64823997(+)$1	226	96	105	15.3606
GGGGGGGFF	chr3:184040552-184040830(+)$1	278	112	121	13.0655
:ffffff""	chr15:40280082-40280368(+)$1	286	254	263	12.0000
FFFF:::::	chr11:62293944-62294185(-)$1	241	45	54	12.6557
:::::DDDD	chr17:57759608-57759872(+)$1	264	0	9	11.4262
:::::::::	chr8:95531368-95531696(-)$1	328	125	134	19.2131
IIIIZZZDD	chr14:102449813-102450045(+)$1	232	195	204	15.3606
dddqqqqqq	chr1:220208204-220208454(-)$1	250	211	220	11.7540
ggg^^^^^^	chrX:123184918-123185148(+)$1	230	30	39	19.2131
rrrrrrrrb	chr3:184049446-184049694(+)$1	248	49	58	12.0819
gggggggcc	chr17:57750957-57751207(+)$1	250	28	37	15.6065
^^^^^^^^^	chr14:102476080-102476340(+)$1	260	49	58	15.3606
hh]ccc:::	chr2:232320625-232320905(-)$1	280	38	47	15.6885
[ddddqqqq	chr16:18851023-18851351(-)$1	328	49	58	15.5245
ppphhhhhh	chr1:115269508-115269792(-)$1	284	17	26	12.3278
ggggggg::	chr1:19505492-19505732(-)$1	240	230	239	15.1967
eeeennnnn	chr18:18608636-18608997(-)$1	361	53	62	12.7377
oobbbb]ee	chr7:2402604-2402862(+)$1	258	87	96	12.4918
mcccggggg	chr3:47162756-47163025(-)$1	269	153	162	12.5737
dd>>>>>>>	chr1:220151790-220152022(-)$1	232	148	157	12.4918
EEEWWWWWW	chr1:19482721-19483004(-)$1	283	61	70	11.7540
FFFSSSSSS	chr8:48798596-48798808(-)$1	212	85	94	16.3442
e((((((((	chr17:57744057-57744292(+)$1	235	81	90	12.2459
pppffffff	chr17:57743790-57744039(+)$1	249	31	40	12.3278
ggwwwwwww	chr1:52289257-52289509(-)$1	252	29	38	11.7540
ffff22ddd	chr17:1577821-1578071(-)$1	250	85	94	11.5081
ooooooeee	chr21:38528855-38529151(+)$1	296	119	128	16.3442
ccc::ffff	chr7:138264159-138264378(+)$1	219	80	89	12.4918
:::::::::	chr1:154558127-154558395(-)$1	268	37	46	15.1147
:ggggggge	chr17:38560943-38561167(-)$1	224	19	28	12.6557
gggggssss	chr17:7404864-7405145(+)$1	281	193	202	16.1803
======eee	chr1:115273062-115273315(-)$1	253	228	237	16.3442
======::J	chr17:45738384-45738616(+)$1	232	77	86	16.0983
ddddnnnnn	chr8:48719598-48719815(-)$1	217	188	197	15.5245
:::::hhhh	chrX:53610694-53610976(-)$1	282	78	87	11.7540
"""bboooo	chr2:44187650-44187874(-)$1	224	178	187	12.2459
BBdddd"""	chr2:44187598-44187850(-)$1	252	154	163	12.2459
ggggg$$$$	chr16:58568074-58568366(-)$1	292	43	52	16.0983
EEEKKDDDD	chr8:48719647-48719917(-)$1	270	11	20	11.5081
hhhbb%%%%	chr1:52280125-52280362(-)$1	237	16	25	12.3278
g:::::::=	chr8:48842312-48842514(-)$1	202	133	142	15.3606
ff####eee	chr8:48801030-48801283(-)$1	253	52	61	11.3442

#DB
)...(((((	chr14:102445693-102445929(+)$1	1	92	101	15.1967
....)))))	chr11:9459382-9459621(+)$1	1	209	218	15.3606
....(((((	chr2:96958953-96959169(-)$1	1	98	107	12.1639
(.(((((..	chr2:61723953-61724241(-)$1	1	17	26	11.7540
(((..((((	chr1:39903368-39903684(+)$1	1	69	78	12.0819
...))))))	chr8:95518764-95519046(-)$1	1	76	85	15.2786
.........	chr1:12353563-12353857(+)$1	1	6	15	11.3442
..(((((((	chrX:53603808-53604094(-)$1	1	39	48	12.1639
(((......	chrX:123184870-123185114(+)$1	1	78	87	19.2131
(........	chr9:95021123-95021378(-)$1	1	67	76	11.6721
.))))))..	chr8:95507864-95508191(-)$1	1	307	316	15.3606
.((((...(	chr21:47678779-47679104(-)$1	1	171	180	12.3278
(......))	chr5:32363962-32364253(-)$1	1	44	53	15.2786
((((.(((.	chr17:26955331-26955623(-)$1	1	35	44	11.5901
.....((((	chr8:48734214-48734432(-)$1	1	7	16	11.3442
.((.((((.	chr12:939113-939413(+)$1	1	38	47	12.4918
)).......	chr1:220151845-220152064(-)$1	1	190	199	12.4918
))))))...	chr3:184044590-184044848(+)$1	1	199	208	12.0819
((((((((.	chrX:53615269-53615491(-)$1	1	125	134	13.3114
((((((...	chr12:64823771-64823997(+)$1	1	96	105	15.3606
(((((((((	chr3:184040552-184040830(+)$1	1	112	121	13.0655
.((((((..	chr15:40280082-40280368(+)$1	1	254	263	12.0000
((((.....	chr11:62293944-62294185(-)$1	1	45	54	12.6557
.....((((	chr17:57759608-57759872(+)$1	1	0	9	11.4262
.........	chr8:95531368-95531696(-)$1	1	125	134	19.2131
))))...))	chr14:102449813-102450045(+)$1	1	195	204	15.3606
(((......	chr1:220208204-220208454(-)$1	1	211	220	11.7540
(((......	chrX:123184918-123185148(+)$1	1	30	39	19.2131
........)	chr3:184049446-184049694(+)$1	1	49	58	12.0819
)))))))((	chr17:57750957-57751207(+)$1	1	28	37	15.6065
.........	chr14:102476080-102476340(+)$1	1	49	58	15.3606
)).)))...	chr2:232320625-232320905(-)$1	1	38	47	15.6885
.((((....	chr16:18851023-18851351(-)$1	1	49	58	15.5245
...))))))	chr1:115269508-115269792(-)$1	1	17	26	12.3278
)))))))..	chr1:19505492-19505732(-)$1	1	230	239	15.1967
((((.....	chr18:18608636-18608997(-)$1	1	53	62	12.7377
..)))).))	chr7:2402604-2402862(+)$1	1	87	96	12.4918
.))))))))	chr3:47162756-47163025(-)$1	1	153	162	12.5737
)).......	chr1:220151790-220152022(-)$1	1	148	157	12.4918
(((......	chr1:19482721-19483004(-)$1	1	61	70	11.7540
(((......	chr8:48798596-48798808(-)$1	1	85	94	16.3442
(........	chr17:57744057-57744292(+)$1	1	81	90	12.2459
...))))))	chr17:57743790-57744039(+)$1	1	31	40	12.3278
((.......	chr1:52289257-52289509(-)$1	1	29	38	11.7540
))))..)))	chr17:1577821-1578071(-)$1	1	85	94	11.5081
......)))	chr21:38528855-38529151(+)$1	1	119	128	16.3442
)))..((((	chr7:138264159-138264378(+)$1	1	80	89	12.4918
.........	chr1:154558127-154558395(-)$1	1	37	46	15.1147
.((((((((	chr17:38560943-38561167(-)$1	1	19	28	12.6557
(((((....	chr17:7404864-7405145(+)$1	1	193	202	16.1803
)))))))))	chr1:115273062-115273315(-)$1	1	228	237	16.3442
))))))..)	chr17:45738384-45738616(+)$1	1	77	86	16.0983
((((.....	chr8:48719598-48719815(-)$1	1	188	197	15.5245
.....((((	chrX:53610694-53610976(-)$1	1	78	87	11.7540
...((....	chr2:44187650-44187874(-)$1	1	178	187	12.2459
))((((...	chr2:44187598-44187850(-)$1	1	154	163	12.2459
(((((....	chr16:58568074-58568366(-)$1	1	43	52	16.0983
(((..((((	chr8:48719647-48719917(-)$1	1	11	20	11.5081
(((((....	chr1:52280125-52280362(-)$1	1	16	25	12.3278
).......(	chr8:48842312-48842514(-)$1	1	133	142	15.3606
((....(((	chr8:48801030-48801283(-)$1	1	52	61	11.3442

#PSSM
C : 0.81	G : 0.06	A : 0.06	c : 0.03	g : 0.01	
U : 0.78	A : 0.09	u : 0.03	G : 0.03	C : 0.01	g : 0.01	a : 0.01	
U : 0.80	u : 0.06	G : 0.06	C : 0.04	A : 0.01	
U : 0.70	G : 0.16	u : 0.06	A : 0.04	C : 0.01	
U : 0.63	C : 0.13	A : 0.08	G : 0.08	u : 0.06	
U : 0.73	A : 0.08	G : 0.06	u : 0.04	C : 0.04	a : 0.01	
U : 0.75	C : 0.09	u : 0.06	A : 0.04	G : 0.03	
U : 0.77	u : 0.06	C : 0.06	G : 0.06	A : 0.03	
U : 0.93	u : 0.04	C : 0.01	

#score	834.2131147540993
#seq	61
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_UTR_m1_run2.nuc.txt

#NT
AUUUCUUU	chr2:182763491-182763746(+)$1	255	175	183	16.5438
UUUUCUUU	chr11:14540413-14540689(-)$1	276	85	93	20.8421
UUUUGUUU	chr7:77236433-77236688(+)$1	255	26	34	18.3859
UUUUCUUU	chr7:148506347-148506611(-)$1	264	117	125	20.8421
UUGUCUUU	chr8:124381964-124382314(-)$1	350	329	337	16.4561
UUUUCUUU	chr5:137902725-137902971(-)$1	246	88	96	20.8421
UUUUCUGU	chr6:32943001-32943264(+)$1	263	123	131	16.8947
UUAUCUUU	chr11:64543834-64544125(-)$1	291	247	255	16.2807
UUUUCUUU	chr2:170470834-170471100(+)$1	266	59	67	20.8421
UUUUAUUU	chr12:46760775-46761080(-)$1	305	76	84	18.4736
UUUUUUUU	chr3:150276056-150276354(+)$1	298	97	105	18.3859
UUUUGUUU	chr7:140406225-140406486(+)$1	261	121	129	18.3859
UUUUUUUU	chr4:164440375-164440630(+)$1	255	86	94	18.3859
UUUUCUUU	chr3:20016959-20017235(+)$1	276	122	130	20.8421
UUUUCUGU	chr17:31065268-31065547(-)$1	279	127	135	16.8947
UUUUCUUU	chr1:52215677-52215953(+)$1	276	249	257	20.8421
UUUUGUUU	chr2:38536378-38536673(-)$1	295	12	20	18.3859
UUUUCUGU	chr6:26138169-26138426(+)$1	257	40	48	16.8947
UUUUUUUU	chr15:79179484-79179771(+)$1	287	69	77	18.3859
uuuucuuu	chr6:43594517-43594826(-)$1	309	236	244	20.8421
UUUUCUUU	chr12:123887966-123888243(+)$1	277	133	141	20.8421
UUUUCUUU	chr9:134107590-134107822(+)$1	232	189	197	20.8421
UUUUCUUU	chr17:35468435-35468694(-)$1	259	95	103	20.8421
UUUUCUUU	chr3:183860462-183860780(+)$1	318	71	79	20.8421
UUUUUUUU	chr1:211447431-211447703(+)$1	272	4	12	18.3859
UUUUAUUU	chr3:156870680-156870958(-)$1	278	188	196	18.4736
UUUUUUUU	chr15:79172795-79173115(+)$1	320	39	47	18.3859
UUUUGUUU	chr3:127771561-127771849(+)$1	288	96	104	18.3859
AUUUCUUU	chr3:141640685-141640957(+)$1	272	110	118	16.5438
UUUUGUUU	chr4:83345897-83346154(-)$1	257	100	108	18.3859
UUUUCUUU	chr17:37595275-37595564(-)$1	289	102	110	20.8421
UUUUAUUU	chr17:37590458-37590706(-)$1	248	90	98	18.4736
UUUUCUUU	chr7:6502667-6502931(-)$1	264	97	105	20.8421
UUUUCUUU	chrX:135954318-135954636(-)$1	318	40	48	20.8421
AUUUCUUU	chr13:53030542-53030876(+)$1	334	214	222	16.5438
UUUUUUUU	chr1:162762523-162762802(+)$1	279	149	157	18.3859
UUUUCUUU	chr8:42251603-42251854(+)$1	251	111	119	20.8421
UUGUCUUU	chr16:24807081-24807333(+)$1	252	130	138	16.4561
UUUUCUUU	chr17:73142616-73142893(-)$1	277	101	109	20.8421
UUUUAUUU	chr7:116550161-116550422(+)$1	261	112	120	18.4736
UUUUCUGU	chr7:56169424-56169677(-)$1	253	109	117	16.8947
UUUUCUGU	chr11:2972887-2973148(-)$1	261	91	99	16.8947
UUUUAUUU	chr20:34319690-34319938(-)$1	248	164	172	18.4736
UUUUCUUU	chr15:79170494-79170755(+)$1	261	119	127	20.8421
uuuucuuu	chr6:36569634-36569912(+)$1	278	78	86	20.8421
UUUUGUUU	chr6:36043459-36043806(+)$1	347	98	106	18.3859
UUUUCUUU	chr15:101826960-101827230(-)$1	270	163	171	20.8421
UUUUUUUU	chr12:123005800-123006089(-)$1	289	94	102	18.3859
UUUUAUUU	chr7:104714969-104715236(+)$1	267	59	67	18.4736
UUUUCUUU	chr7:151167601-151167858(-)$1	257	110	118	20.8421
UUUUAUUU	chr3:185637088-185637421(-)$1	333	56	64	18.4736
UUUUGUUU	chr5:6611088-6611352(-)$1	264	3	11	18.3859
AUUUCUUU	chr2:38804550-38804807(-)$1	257	20	28	16.5438
UUUUCUUU	chr2:70454729-70454999(-)$1	270	10	18	20.8421
UUGUCUUU	chr3:180325825-180326084(+)$1	259	64	72	16.4561
UUUUCUGU	chr3:128363666-128363935(-)$1	269	96	104	16.8947

#otherMatches

#Struct PSSM
IIIIIIII	chr10:70520848-70521068(+)$1	220	195	203	18.4736
:::eeeee	chr2:182763491-182763746(+)$1	255	175	183	16.5438
tttttttt	chr11:14540413-14540689(-)$1	276	85	93	20.8421
mmffffff	chr7:77236433-77236688(+)$1	255	26	34	18.3859
###cccmm	chr7:148506347-148506611(-)$1	264	117	125	20.8421
EEFFFFFF	chr8:124381964-124382314(-)$1	350	329	337	16.4561
ooeeeee:	chr5:137902725-137902971(-)$1	246	88	96	20.8421
!!bb[fff	chr6:32943001-32943264(+)$1	263	123	131	16.8947
gggggggm	chr11:64543834-64544125(-)$1	291	247	255	16.2807
::::::::	chr2:170470834-170471100(+)$1	266	59	67	20.8421
UUUUUUUU	chr12:46760775-46761080(-)$1	305	76	84	18.4736
GGGGGGG{	chr3:150276056-150276354(+)$1	298	97	105	18.3859
iiiiii]c	chr7:140406225-140406486(+)$1	261	121	129	18.3859
TTTTTTTT	chr4:164440375-164440630(+)$1	255	86	94	18.3859
ggggggg:	chr3:20016959-20017235(+)$1	276	122	130	20.8421
yyyyyyyy	chr17:31065268-31065547(-)$1	279	127	135	16.8947
ffffbbnn	chr1:52215677-52215953(+)$1	276	249	257	20.8421
JJJJJJJJ	chr2:38536378-38536673(-)$1	295	12	20	18.3859
++++++++	chr6:26138169-26138426(+)$1	257	40	48	16.8947
========	chr15:79179484-79179771(+)$1	287	69	77	18.3859
((((dddd	chr6:43594517-43594826(-)$1	309	236	244	20.8421
========	chr12:123887966-123888243(+)$1	277	133	141	20.8421
=====:::	chr9:134107590-134107822(+)$1	232	189	197	20.8421
eeeebbii	chr17:35468435-35468694(-)$1	259	95	103	20.8421
:::iiiii	chr3:183860462-183860780(+)$1	318	71	79	20.8421
EE:::::f	chr1:211447431-211447703(+)$1	272	4	12	18.3859
666dddd3	chr3:156870680-156870958(-)$1	278	188	196	18.4736
iiiiii[c	chr15:79172795-79173115(+)$1	320	39	47	18.3859
"ddddyyy	chr3:127771561-127771849(+)$1	288	96	104	18.3859
JJJJJJJ:	chr3:141640685-141640957(+)$1	272	110	118	16.5438
::::::::	chr4:83345897-83346154(-)$1	257	100	108	18.3859
:::::ddd	chr17:37595275-37595564(-)$1	289	102	110	20.8421
77======	chr17:37590458-37590706(-)$1	248	90	98	18.4736
gggggg22	chr7:6502667-6502931(-)$1	264	97	105	20.8421
=[bbffff	chrX:135954318-135954636(-)$1	318	40	48	20.8421
eeccc###	chr13:53030542-53030876(+)$1	334	214	222	16.5438
FMMMMGGG	chr1:162762523-162762802(+)$1	279	149	157	18.3859
iiiiiii#	chr8:42251603-42251854(+)$1	251	111	119	20.8421
llccc777	chr16:24807081-24807333(+)$1	252	130	138	16.4561
b!!ggggg	chr17:73142616-73142893(-)$1	277	101	109	20.8421
iiiipppp	chr7:116550161-116550422(+)$1	261	112	120	18.4736
::::::::	chr7:56169424-56169677(-)$1	253	109	117	16.8947
ffffff[a	chr11:2972887-2973148(-)$1	261	91	99	16.8947
JJJJJJJJ	chr20:34319690-34319938(-)$1	248	164	172	18.4736
gggg5555	chr15:79170494-79170755(+)$1	261	119	127	20.8421
iiiiii[i	chr6:36569634-36569912(+)$1	278	78	86	20.8421
::::::::	chr6:36043459-36043806(+)$1	347	98	106	18.3859
========	chr15:101826960-101827230(-)$1	270	163	171	20.8421
((((hhhh	chr12:123005800-123006089(-)$1	289	94	102	18.3859
ooohhhhh	chr7:104714969-104715236(+)$1	267	59	67	18.4736
rrddddhh	chr7:151167601-151167858(-)$1	257	110	118	20.8421
ffffffff	chr3:185637088-185637421(-)$1	333	56	64	18.4736
CLLLEEEE	chr5:6611088-6611352(-)$1	264	3	11	18.3859
EEE{EEEE	chr2:38804550-38804807(-)$1	257	20	28	16.5438
EE{FFFFF	chr2:70454729-70454999(-)$1	270	10	18	20.8421
sffffff:	chr3:180325825-180326084(+)$1	259	64	72	16.4561
======[c	chr3:128363666-128363935(-)$1	269	96	104	16.8947

#DB
))))))))	chr10:70520848-70521068(+)$1	1	195	203	18.4736
...(((((	chr2:182763491-182763746(+)$1	1	175	183	16.5438
........	chr11:14540413-14540689(-)$1	1	85	93	20.8421
..))))))	chr7:77236433-77236688(+)$1	1	26	34	18.3859
...(((..	chr7:148506347-148506611(-)$1	1	117	125	20.8421
))))))))	chr8:124381964-124382314(-)$1	1	329	337	16.4561
..))))).	chr5:137902725-137902971(-)$1	1	88	96	20.8421
..((.(((	chr6:32943001-32943264(+)$1	1	123	131	16.8947
(((((((.	chr11:64543834-64544125(-)$1	1	247	255	16.2807
........	chr2:170470834-170471100(+)$1	1	59	67	20.8421
........	chr12:46760775-46761080(-)$1	1	76	84	18.4736
(((((((.	chr3:150276056-150276354(+)$1	1	97	105	18.3859
)))))).)	chr7:140406225-140406486(+)$1	1	121	129	18.3859
........	chr4:164440375-164440630(+)$1	1	86	94	18.3859
))))))).	chr3:20016959-20017235(+)$1	1	122	130	20.8421
........	chr17:31065268-31065547(-)$1	1	127	135	16.8947
((((((..	chr1:52215677-52215953(+)$1	1	249	257	20.8421
((((((((	chr2:38536378-38536673(-)$1	1	12	20	18.3859
........	chr6:26138169-26138426(+)$1	1	40	48	16.8947
((((((((	chr15:79179484-79179771(+)$1	1	69	77	18.3859
....((((	chr6:43594517-43594826(-)$1	1	236	244	20.8421
((((((((	chr12:123887966-123888243(+)$1	1	133	141	20.8421
)))))...	chr9:134107590-134107822(+)$1	1	189	197	20.8421
((((((((	chr17:35468435-35468694(-)$1	1	95	103	20.8421
...(((((	chr3:183860462-183860780(+)$1	1	71	79	20.8421
((.....(	chr1:211447431-211447703(+)$1	1	4	12	18.3859
...)))).	chr3:156870680-156870958(-)$1	1	188	196	18.4736
((((((.(	chr15:79172795-79173115(+)$1	1	39	47	18.3859
.((((...	chr3:127771561-127771849(+)$1	1	96	104	18.3859
(((((((.	chr3:141640685-141640957(+)$1	1	110	118	16.5438
........	chr4:83345897-83346154(-)$1	1	100	108	18.3859
.....(((	chr17:37595275-37595564(-)$1	1	102	110	20.8421
..))))))	chr17:37590458-37590706(-)$1	1	90	98	18.4736
))))))..	chr7:6502667-6502931(-)$1	1	97	105	20.8421
(.((((((	chrX:135954318-135954636(-)$1	1	40	48	20.8421
(((((...	chr13:53030542-53030876(+)$1	1	214	222	16.5438
(....(((	chr1:162762523-162762802(+)$1	1	149	157	18.3859
(((((((.	chr8:42251603-42251854(+)$1	1	111	119	20.8421
..)))...	chr16:24807081-24807333(+)$1	1	130	138	16.4561
(..(((((	chr17:73142616-73142893(-)$1	1	101	109	20.8421
((((....	chr7:116550161-116550422(+)$1	1	112	120	18.4736
........	chr7:56169424-56169677(-)$1	1	109	117	16.8947
((((((.(	chr11:2972887-2973148(-)$1	1	91	99	16.8947
((((((((	chr20:34319690-34319938(-)$1	1	164	172	18.4736
))))....	chr15:79170494-79170755(+)$1	1	119	127	20.8421
((((((.(	chr6:36569634-36569912(+)$1	1	78	86	20.8421
........	chr6:36043459-36043806(+)$1	1	98	106	18.3859
((((((((	chr15:101826960-101827230(-)$1	1	163	171	20.8421
....((((	chr12:123005800-123006089(-)$1	1	94	102	18.3859
...)))))	chr7:104714969-104715236(+)$1	1	59	67	18.4736
..))))))	chr7:151167601-151167858(-)$1	1	110	118	20.8421
((((((((	chr3:185637088-185637421(-)$1	1	56	64	18.4736
(...((((	chr5:6611088-6611352(-)$1	1	3	11	18.3859
(((.((((	chr2:38804550-38804807(-)$1	1	20	28	16.5438
((.(((((	chr2:70454729-70454999(-)$1	1	10	18	20.8421
.)))))).	chr3:180325825-180326084(+)$1	1	64	72	16.4561
((((((.(	chr3:128363666-128363935(-)$1	1	96	104	16.8947

#PSSM
U : 0.87	A : 0.07	u : 0.05	
U : 0.94	u : 0.05	
U : 0.87	u : 0.05	G : 0.05	A : 0.01	
U : 0.94	u : 0.05	
C : 0.57	G : 0.12	A : 0.12	U : 0.12	c : 0.03	a : 0.01	
U : 0.94	u : 0.05	
U : 0.84	G : 0.10	u : 0.05	
U : 0.94	u : 0.05	

#score	1076.0701754385982
#seq	57
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_transcript_m2_run2.nuc.txt

#NT
UGGA	chr16:84743074-84743383(+)$1	309	3	7	12.0000
ugga	chr11:70217493-70217724(+)$1	231	8	12	12.0000
UGGA	chr6:45273376-45273682(-)$1	306	26	30	12.0000
UGGA	chr22:50843482-50843771(+)$1	289	66	70	12.0000
UGGA	chr16:89360358-89360623(-)$1	265	131	135	12.0000
ugga	chr19:40582797-40583101(-)$1	304	126	130	12.0000
UGGA	chr19:34882697-34882940(+)$1	243	145	149	12.0000
UGGA	chr13:113876639-113876960(+)$1	321	32	36	12.0000
UGGA	chr6:149866116-149866384(-)$1	268	54	58	12.0000
UGGA	chrX:73338766-73339063(-)$1	297	5	9	12.0000
ugga	chr8:17148342-17148694(+)$1	352	202	206	12.0000
ugga	chr4:454686-454948(-)$1	262	99	103	12.0000
ugga	chr16:10543451-10543741(+)$1	290	138	142	12.0000
UGGA	chrY:2716305-2716601(+)$1	296	71	75	12.0000
UGGA	chr17:55365127-55365388(+)$1	261	139	143	12.0000
UGGA	chrY:2716497-2716763(+)$1	266	7	11	12.0000
UGGA	chr1:20234805-20235177(+)$1	372	15	19	12.0000
ugga	chr10:21991824-21992095(+)$1	271	3	7	12.0000
ugga	chr10:114804625-114804957(+)$1	332	105	109	12.0000
ugga	chr2:148721226-148721499(-)$1	273	35	39	12.0000
UGGA	chr11:70217524-70217765(+)$1	241	112	116	12.0000
ugga	chr6:37918068-37918344(+)$1	276	132	136	12.0000
ugga	chr21:35459805-35460115(+)$1	310	49	53	12.0000
ugga	chr6:167436438-167436780(+)$1	342	100	104	12.0000
UGGA	chr15:25311321-25311616(+)$1	295	17	21	12.0000
ugga	chr2:75756169-75756454(-)$1	285	232	236	12.0000
UGGA	chr5:286882-287220(+)$1	338	74	78	12.0000
ugga	chr22:22659650-22659941(+)$1	291	12	16	12.0000
UGGA	chr16:84787415-84787725(+)$1	310	34	38	12.0000
UGGA	chr19:34882458-34882765(+)$1	307	218	222	12.0000
ugga	chr14:36110134-36110421(-)$1	287	11	15	12.0000
ugga	chr14:55115575-55115848(+)$1	273	79	83	12.0000
UGGA	chr14:31657939-31658298(-)$1	359	120	124	12.0000
UGGA	chr15:99264607-99264910(+)$1	303	35	39	12.0000
UGGA	chr14:39736746-39737022(+)$1	276	176	180	12.0000
ugga	chr5:118805494-118805845(+)$1	351	98	102	12.0000
UGGA	chrX:41194368-41194623(+)$1	255	6	10	12.0000
UGGA	chr11:589801-590077(+)$1	276	96	100	12.0000
UGGA	chr15:25315779-25316028(+)$1	249	86	90	12.0000
UGGA	chr11:70633557-70633942(-)$1	385	36	40	12.0000
UGGA	chr15:99252808-99253182(+)$1	374	61	65	12.0000
ugga	chr3:31603854-31604125(+)$1	271	43	47	12.0000
UGGA	chrY:2715365-2715663(+)$1	298	33	37	12.0000
ugga	chr6:45279925-45280191(-)$1	266	106	110	12.0000
ugga	chr2:62939197-62939476(+)$1	279	2	6	12.0000
UGGA	chr7:157167729-157168018(+)$1	289	158	162	12.0000
UGGA	chr7:5393860-5394157(-)$1	297	53	57	12.0000
UGGA	chr15:25229057-25229291(+)$1	234	20	24	12.0000
UGGA	chr16:1360052-1360315(+)$1	263	123	127	12.0000
UGGA	chr6:167345489-167345818(-)$1	329	122	126	12.0000
ugga	chr14:55114729-55114949(+)$1	220	39	43	12.0000
UGGA	chr18:60218727-60219034(+)$1	307	3	7	12.0000
ugga	chr18:9229820-9230088(+)$1	268	34	38	12.0000
UGGA	chr15:25312313-25312560(+)$1	247	109	113	12.0000
UGGA	chr9:117052426-117052697(+)$1	271	139	143	12.0000
UGGA	chr14:21692481-21692800(-)$1	319	33	37	12.0000
UGGA	chr2:153256240-153256546(+)$1	306	125	129	12.0000
ugga	chr7:155506034-155506319(+)$1	285	12	16	12.0000
ugga	chr6:4794666-4794940(+)$1	274	51	55	12.0000
UGGA	chr11:70632397-70632657(-)$1	260	101	105	12.0000
UGGA	chrY:2715561-2715845(+)$1	284	80	84	12.0000
ugga	chr16:68143766-68144021(+)$1	255	126	130	12.0000
UGGA	chr19:34873761-34874135(+)$1	374	32	36	12.0000
ugga	chr5:282119-282377(+)$1	258	24	28	12.0000
UGGA	chr10:81457714-81458003(-)$1	289	259	263	12.0000
ugga	chr15:58989467-58989759(-)$1	292	96	100	12.0000
ugga	chr8:121800971-121801247(-)$1	276	36	40	12.0000
ugga	chr5:1620746-1621016(-)$1	270	46	50	12.0000
ugga	chr13:113866222-113866481(+)$1	259	115	119	12.0000
UGGA	chr19:34874032-34874301(+)$1	269	97	101	12.0000
ugga	chr2:148720493-148720762(-)$1	269	79	83	12.0000
ugga	chr2:148720208-148720473(-)$1	265	190	194	12.0000
UGGA	chr6:7125928-7126217(+)$1	289	106	110	12.0000
UGGA	chr14:55114807-55115099(+)$1	292	33	37	12.0000
ugga	chr12:46642796-46643044(-)$1	248	135	139	12.0000
UGGA	chr6:167344779-167345082(-)$1	303	86	90	12.0000
UGGA	chr16:24763641-24763961(+)$1	320	216	220	12.0000
UGGA	chr3:171847699-171848007(+)$1	308	2	6	12.0000
UGGA	chr15:25314347-25314593(+)$1	246	128	132	12.0000
UGGA	chr17:80225248-80225494(-)$1	246	125	129	12.0000

#otherMatches

#Struct PSSM
!!bb	chr21:46292416-46292694(-)$1	278	191	195	12.0000
fff!	chr16:84743074-84743383(+)$1	309	3	7	12.0000
eeee	chr11:70217493-70217724(+)$1	231	8	12	12.0000
llle	chr6:45273376-45273682(-)$1	306	26	30	12.0000
ee[b	chr22:50843482-50843771(+)$1	289	66	70	12.0000
hbb[	chr16:89360358-89360623(-)$1	265	131	135	12.0000
iiii	chr19:40582797-40583101(-)$1	304	126	130	12.0000
dppp	chr19:34882697-34882940(+)$1	243	145	149	12.0000
DDD{	chr13:113876639-113876960(+)$1	321	32	36	12.0000
occc	chr6:149866116-149866384(-)$1	268	54	58	12.0000
b[ee	chrX:73338766-73339063(-)$1	297	5	9	12.0000
dd[d	chr8:17148342-17148694(+)$1	352	202	206	12.0000
::FF	chr4:454686-454948(-)$1	262	99	103	12.0000
ggg:	chr16:10543451-10543741(+)$1	290	138	142	12.0000
dddd	chrY:2716305-2716601(+)$1	296	71	75	12.0000
dddF	chr17:55365127-55365388(+)$1	261	139	143	12.0000
AMMM	chrY:2716497-2716763(+)$1	266	7	11	12.0000
[ccc	chr1:20234805-20235177(+)$1	372	15	19	12.0000
ffff	chr10:21991824-21992095(+)$1	271	3	7	12.0000
::::	chr10:114804625-114804957(+)$1	332	105	109	12.0000
mccc	chr2:148721226-148721499(-)$1	273	35	39	12.0000
====	chr11:70217524-70217765(+)$1	241	112	116	12.0000
GGGG	chr6:37918068-37918344(+)$1	276	132	136	12.0000
bbqq	chr21:35459805-35460115(+)$1	310	49	53	12.0000
::::	chr6:167436438-167436780(+)$1	342	100	104	12.0000
[ddd	chr15:25311321-25311616(+)$1	295	17	21	12.0000
dddd	chr2:75756169-75756454(-)$1	285	232	236	12.0000
pccc	chr5:286882-287220(+)$1	338	74	78	12.0000
dmmm	chr22:22659650-22659941(+)$1	291	12	16	12.0000
GG{A	chr16:84787415-84787725(+)$1	310	34	38	12.0000
dd!!	chr19:34882458-34882765(+)$1	307	218	222	12.0000
ddqq	chr14:36110134-36110421(-)$1	287	11	15	12.0000
eccc	chr14:55115575-55115848(+)$1	273	79	83	12.0000
5555	chr14:31657939-31658298(-)$1	359	120	124	12.0000
eddd	chr15:99264607-99264910(+)$1	303	35	39	12.0000
pppa	chr14:39736746-39737022(+)$1	276	176	180	12.0000
FFFF	chr5:118805494-118805845(+)$1	351	98	102	12.0000
[bb[	chrX:41194368-41194623(+)$1	255	6	10	12.0000
LLDD	chr11:589801-590077(+)$1	276	96	100	12.0000
ggg]	chr15:25315779-25316028(+)$1	249	86	90	12.0000
Fiii	chr11:70633557-70633942(-)$1	385	36	40	12.0000
fwww	chr15:99252808-99253182(+)$1	374	61	65	12.0000
h!!d	chr3:31603854-31604125(+)$1	271	43	47	12.0000
oooo	chrY:2715365-2715663(+)$1	298	33	37	12.0000
ffff	chr6:45279925-45280191(-)$1	266	106	110	12.0000
DDD{	chr2:62939197-62939476(+)$1	279	2	6	12.0000
EEE:	chr7:157167729-157168018(+)$1	289	158	162	12.0000
glll	chr7:5393860-5394157(-)$1	297	53	57	12.0000
c"""	chr15:25229057-25229291(+)$1	234	20	24	12.0000
ECCC	chr16:1360052-1360315(+)$1	263	123	127	12.0000
~~~~	chr6:167345489-167345818(-)$1	329	122	126	12.0000
CCC{	chr14:55114729-55114949(+)$1	220	39	43	12.0000
:a!!	chr18:60218727-60219034(+)$1	307	3	7	12.0000
KEEE	chr18:9229820-9230088(+)$1	268	34	38	12.0000
cc22	chr15:25312313-25312560(+)$1	247	109	113	12.0000
EEE~	chr9:117052426-117052697(+)$1	271	139	143	12.0000
e:::	chr14:21692481-21692800(-)$1	319	33	37	12.0000
%%%%	chr2:153256240-153256546(+)$1	306	125	129	12.0000
GGLL	chr7:155506034-155506319(+)$1	285	12	16	12.0000
::::	chr6:4794666-4794940(+)$1	274	51	55	12.0000
EEEL	chr11:70632397-70632657(-)$1	260	101	105	12.0000
ddzz	chrY:2715561-2715845(+)$1	284	80	84	12.0000
CCCC	chr16:68143766-68144021(+)$1	255	126	130	12.0000
eeDD	chr19:34873761-34874135(+)$1	374	32	36	12.0000
ffee	chr5:282119-282377(+)$1	258	24	28	12.0000
7a]g	chr10:81457714-81458003(-)$1	289	259	263	12.0000
555e	chr15:58989467-58989759(-)$1	292	96	100	12.0000
eeee	chr8:121800971-121801247(-)$1	276	36	40	12.0000
ffff	chr5:1620746-1621016(-)$1	270	46	50	12.0000
====	chr13:113866222-113866481(+)$1	259	115	119	12.0000
GGG:	chr19:34874032-34874301(+)$1	269	97	101	12.0000
DDDD	chr2:148720493-148720762(-)$1	269	79	83	12.0000
dd]b	chr2:148720208-148720473(-)$1	265	190	194	12.0000
$$$$	chr6:7125928-7126217(+)$1	289	106	110	12.0000
qqqq	chr14:55114807-55115099(+)$1	292	33	37	12.0000
ffff	chr12:46642796-46643044(-)$1	248	135	139	12.0000
gggg	chr6:167344779-167345082(-)$1	303	86	90	12.0000
!!dd	chr16:24763641-24763961(+)$1	320	216	220	12.0000
::::	chr3:171847699-171848007(+)$1	308	2	6	12.0000
[ccc	chr15:25314347-25314593(+)$1	246	128	132	12.0000
4fff	chr17:80225248-80225494(-)$1	246	125	129	12.0000

#DB
..((	chr21:46292416-46292694(-)$1	1	191	195	12.0000
(((.	chr16:84743074-84743383(+)$1	1	3	7	12.0000
((((	chr11:70217493-70217724(+)$1	1	8	12	12.0000
...)	chr6:45273376-45273682(-)$1	1	26	30	12.0000
((.(	chr22:50843482-50843771(+)$1	1	66	70	12.0000
)((.	chr16:89360358-89360623(-)$1	1	131	135	12.0000
))))	chr19:40582797-40583101(-)$1	1	126	130	12.0000
(...	chr19:34882697-34882940(+)$1	1	145	149	12.0000
(((.	chr13:113876639-113876960(+)$1	1	32	36	12.0000
.)))	chr6:149866116-149866384(-)$1	1	54	58	12.0000
(.((	chrX:73338766-73339063(-)$1	1	5	9	12.0000
((.(	chr8:17148342-17148694(+)$1	1	202	206	12.0000
..((	chr4:454686-454948(-)$1	1	99	103	12.0000
))).	chr16:10543451-10543741(+)$1	1	138	142	12.0000
((((	chrY:2716305-2716601(+)$1	1	71	75	12.0000
)))(	chr17:55365127-55365388(+)$1	1	139	143	12.0000
(...	chrY:2716497-2716763(+)$1	1	7	11	12.0000
.(((	chr1:20234805-20235177(+)$1	1	15	19	12.0000
((((	chr10:21991824-21992095(+)$1	1	3	7	12.0000
....	chr10:114804625-114804957(+)$1	1	105	109	12.0000
.)))	chr2:148721226-148721499(-)$1	1	35	39	12.0000
))))	chr11:70217524-70217765(+)$1	1	112	116	12.0000
))))	chr6:37918068-37918344(+)$1	1	132	136	12.0000
((..	chr21:35459805-35460115(+)$1	1	49	53	12.0000
....	chr6:167436438-167436780(+)$1	1	100	104	12.0000
.(((	chr15:25311321-25311616(+)$1	1	17	21	12.0000
))))	chr2:75756169-75756454(-)$1	1	232	236	12.0000
.)))	chr5:286882-287220(+)$1	1	74	78	12.0000
(...	chr22:22659650-22659941(+)$1	1	12	16	12.0000
((.(	chr16:84787415-84787725(+)$1	1	34	38	12.0000
((..	chr19:34882458-34882765(+)$1	1	218	222	12.0000
((..	chr14:36110134-36110421(-)$1	1	11	15	12.0000
)(((	chr14:55115575-55115848(+)$1	1	79	83	12.0000
....	chr14:31657939-31658298(-)$1	1	120	124	12.0000
)(((	chr15:99264607-99264910(+)$1	1	35	39	12.0000
...)	chr14:39736746-39737022(+)$1	1	176	180	12.0000
((((	chr5:118805494-118805845(+)$1	1	98	102	12.0000
.((.	chrX:41194368-41194623(+)$1	1	6	10	12.0000
..((	chr11:589801-590077(+)$1	1	96	100	12.0000
))).	chr15:25315779-25316028(+)$1	1	86	90	12.0000
((((	chr11:70633557-70633942(-)$1	1	36	40	12.0000
(...	chr15:99252808-99253182(+)$1	1	61	65	12.0000
(..(	chr3:31603854-31604125(+)$1	1	43	47	12.0000
....	chrY:2715365-2715663(+)$1	1	33	37	12.0000
((((	chr6:45279925-45280191(-)$1	1	106	110	12.0000
(((.	chr2:62939197-62939476(+)$1	1	2	6	12.0000
(((.	chr7:157167729-157168018(+)$1	1	158	162	12.0000
(...	chr7:5393860-5394157(-)$1	1	53	57	12.0000
(...	chr15:25229057-25229291(+)$1	1	20	24	12.0000
((((	chr16:1360052-1360315(+)$1	1	123	127	12.0000
....	chr6:167345489-167345818(-)$1	1	122	126	12.0000
(((.	chr14:55114729-55114949(+)$1	1	39	43	12.0000
.(..	chr18:60218727-60219034(+)$1	1	3	7	12.0000
.(((	chr18:9229820-9230088(+)$1	1	34	38	12.0000
))..	chr15:25312313-25312560(+)$1	1	109	113	12.0000
))).	chr9:117052426-117052697(+)$1	1	139	143	12.0000
)...	chr14:21692481-21692800(-)$1	1	33	37	12.0000
....	chr2:153256240-153256546(+)$1	1	125	129	12.0000
((..	chr7:155506034-155506319(+)$1	1	12	16	12.0000
....	chr6:4794666-4794940(+)$1	1	51	55	12.0000
(((.	chr11:70632397-70632657(-)$1	1	101	105	12.0000
((..	chrY:2715561-2715845(+)$1	1	80	84	12.0000
)(((	chr16:68143766-68144021(+)$1	1	126	130	12.0000
))((	chr19:34873761-34874135(+)$1	1	32	36	12.0000
((((	chr5:282119-282377(+)$1	1	24	28	12.0000
.).)	chr10:81457714-81458003(-)$1	1	259	263	12.0000
...)	chr15:58989467-58989759(-)$1	1	96	100	12.0000
((((	chr8:121800971-121801247(-)$1	1	36	40	12.0000
((((	chr5:1620746-1621016(-)$1	1	46	50	12.0000
))))	chr13:113866222-113866481(+)$1	1	115	119	12.0000
(((.	chr19:34874032-34874301(+)$1	1	97	101	12.0000
((((	chr2:148720493-148720762(-)$1	1	79	83	12.0000
)).)	chr2:148720208-148720473(-)$1	1	190	194	12.0000
....	chr6:7125928-7126217(+)$1	1	106	110	12.0000
....	chr14:55114807-55115099(+)$1	1	33	37	12.0000
))))	chr12:46642796-46643044(-)$1	1	135	139	12.0000
))))	chr6:167344779-167345082(-)$1	1	86	90	12.0000
..((	chr16:24763641-24763961(+)$1	1	216	220	12.0000
....	chr3:171847699-171848007(+)$1	1	2	6	12.0000
.(((	chr15:25314347-25314593(+)$1	1	128	132	12.0000
.)))	chr17:80225248-80225494(-)$1	1	125	129	12.0000

#PSSM
U : 0.59	u : 0.40	
G : 0.59	g : 0.40	
G : 0.59	g : 0.40	
A : 0.59	a : 0.40	

#score	972.0000000000001
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_transcript_m3_run2.nuc.txt

#NT
GGCCC	chr1:249153072-249153315(-)$1	243	105	110	15.0000
GGCCC	chr20:61557315-61557600(-)$1	285	46	51	15.0000
GGCCC	chr9:19380093-19380332(-)$1	239	94	99	15.0000
GGCCC	chr4:48782149-48782423(-)$1	274	266	271	15.0000
GGCCC	chr1:153919005-153919255(-)$1	250	12	17	15.0000
GGCCC	chr22:50699870-50700236(-)$1	366	209	214	15.0000
GGCCC	chr19:39138196-39138519(+)$1	323	228	233	15.0000
GGCCC	chr6:155055136-155055409(+)$1	273	206	211	15.0000
GGCCC	chr6:166755853-166756149(-)$1	296	163	168	15.0000
GGCCC	chr22:21348451-21348719(+)$1	268	0	5	15.0000
GGCCC	chr7:44887469-44887718(-)$1	249	205	210	15.0000
GGCCC	chr10:103113735-103113996(+)$1	261	64	69	15.0000
GGCCC	chr1:178994963-178995247(+)$1	284	260	265	15.0000
GGCCC	chr16:9185473-9185734(+)$1	261	200	205	15.0000
GGCCC	chr20:35724171-35724500(-)$1	329	234	239	15.0000
GGCCC	chrX:153991206-153991459(+)$1	253	123	128	15.0000
GGCCC	chr2:61765237-61765499(-)$1	262	3	8	15.0000
GGCCC	chr2:183902904-183903208(-)$1	304	298	303	15.0000
GGCCC	chr2:172379362-172379597(+)$1	235	162	167	15.0000
GGCCC	chr16:88799056-88799287(-)$1	231	208	213	15.0000
GGCCC	chr22:19419049-19419362(-)$1	313	38	43	15.0000
GGCCC	chr1:247094690-247094957(-)$1	267	44	49	15.0000
GGCCC	chr12:56122010-56122239(-)$1	229	102	107	15.0000
GGCCC	chr7:23571471-23571699(-)$1	228	202	207	15.0000
GGCCC	chr19:39926441-39926688(-)$1	247	86	91	15.0000
GGCCC	chr2:111435459-111435729(-)$1	270	0	5	15.0000
GGCCC	chr5:179049794-179050037(-)$1	243	181	186	15.0000
GGCCC	chr18:77867064-77867406(+)$1	342	4	9	15.0000
GGCCC	chr9:15422774-15423066(+)$1	292	124	129	15.0000
GGCCC	chr22:20105259-20105526(+)$1	267	156	161	15.0000
GGCCC	chr7:139044592-139044860(+)$1	268	145	150	15.0000
GGCCC	chr16:2587900-2588217(+)$1	317	208	213	15.0000
GGCCC	chr7:148580936-148581194(-)$1	258	148	153	15.0000
GGCCC	chr5:131132508-131132810(-)$1	302	16	21	15.0000
GGCCC	chr21:27107062-27107334(-)$1	272	60	65	15.0000
GGCCC	chr17:73839682-73839943(-)$1	261	159	164	15.0000
GGCCC	chr11:67810665-67810942(+)$1	277	202	207	15.0000
GGCCC	chr1:26799111-26799372(+)$1	261	21	26	15.0000
GGCCC	chr17:27224488-27224741(-)$1	253	127	132	15.0000
GGCCC	chr2:28974739-28975051(+)$1	312	7	12	15.0000
GGCCC	chr3:37284660-37284985(+)$1	325	264	269	15.0000
GGCCC	chr6:34664393-34664666(-)$1	273	153	158	15.0000
GGCCC	chr22:20105341-20105574(+)$1	233	74	79	15.0000
GGCCC	chr7:5569352-5569615(-)$1	263	193	198	15.0000
GGCCC	chr19:1012067-1012335(-)$1	268	93	98	15.0000
GGCCC	chr1:11072611-11072901(+)$1	290	87	92	15.0000
ggccc	chr2:99224981-99225287(+)$1	306	239	244	15.0000
GGCCC	chr7:23571458-23571671(-)$1	213	174	179	15.0000
GGCCC	chr19:1269236-1269507(+)$1	271	25	30	15.0000
ggccc	chr5:137688338-137688618(+)$1	280	136	141	15.0000
GGCCC	chr1:155904033-155904290(-)$1	257	24	29	15.0000
GGCCC	chr2:231577487-231577742(+)$1	255	198	203	15.0000
GGCCC	chr10:7452754-7453066(-)$1	312	303	308	15.0000
GGCCC	chr19:34919414-34919692(+)$1	278	152	157	15.0000
ggccc	chr8:139815533-139815792(-)$1	259	244	249	15.0000
GGCCC	chr16:28962291-28962545(+)$1	254	139	144	15.0000
GGCCC	chr15:64752849-64753145(+)$1	296	111	116	15.0000
GGCCC	chr10:71075448-71075735(+)$1	287	89	94	15.0000
GGCCC	chr1:228290853-228291124(-)$1	271	168	173	15.0000

#otherMatches

#Struct PSSM
mmmmb	chr19:56166205-56166472(+)$1	267	243	248	15.0000
[ffff	chr1:249153072-249153315(-)$1	243	105	110	15.0000
JJJJJ	chr20:61557315-61557600(-)$1	285	46	51	15.0000
sssss	chr9:19380093-19380332(-)$1	239	94	99	15.0000
ccccc	chr4:48782149-48782423(-)$1	274	266	271	15.0000
HHHHH	chr1:153919005-153919255(-)$1	250	12	17	15.0000
]eeee	chr22:50699870-50700236(-)$1	366	209	214	15.0000
$eeee	chr19:39138196-39138519(+)$1	323	228	233	15.0000
GGGHH	chr6:155055136-155055409(+)$1	273	206	211	15.0000
ggggg	chr6:166755853-166756149(-)$1	296	163	168	15.0000
FFFFF	chr22:21348451-21348719(+)$1	268	0	5	15.0000
2eeee	chr7:44887469-44887718(-)$1	249	205	210	15.0000
!!fff	chr10:103113735-103113996(+)$1	261	64	69	15.0000
ZGGGG	chr1:178994963-178995247(+)$1	284	260	265	15.0000
IIIII	chr16:9185473-9185734(+)$1	261	200	205	15.0000
JJJJJ	chr20:35724171-35724500(-)$1	329	234	239	15.0000
lllcc	chrX:153991206-153991459(+)$1	253	123	128	15.0000
mmmbb	chr2:61765237-61765499(-)$1	262	3	8	15.0000
FFFF:	chr2:183902904-183903208(-)$1	304	298	303	15.0000
d]ddd	chr2:172379362-172379597(+)$1	235	162	167	15.0000
gggff	chr16:88799056-88799287(-)$1	231	208	213	15.0000
{DDDD	chr22:19419049-19419362(-)$1	313	38	43	15.0000
[ccce	chr1:247094690-247094957(-)$1	267	44	49	15.0000
eeee[	chr12:56122010-56122239(-)$1	229	102	107	15.0000
eeeoo	chr7:23571471-23571699(-)$1	228	202	207	15.0000
DDDDC	chr19:39926441-39926688(-)$1	247	86	91	15.0000
:HHHH	chr2:111435459-111435729(-)$1	270	0	5	15.0000
]gggg	chr5:179049794-179050037(-)$1	243	181	186	15.0000
FF:EE	chr18:77867064-77867406(+)$1	342	4	9	15.0000
]gggg	chr9:15422774-15423066(+)$1	292	124	129	15.0000
fffff	chr22:20105259-20105526(+)$1	267	156	161	15.0000
ddddd	chr7:139044592-139044860(+)$1	268	145	150	15.0000
3dddd	chr16:2587900-2588217(+)$1	317	208	213	15.0000
d[bbe	chr7:148580936-148581194(-)$1	258	148	153	15.0000
eee::	chr5:131132508-131132810(-)$1	302	16	21	15.0000
ccfff	chr21:27107062-27107334(-)$1	272	60	65	15.0000
bdddd	chr17:73839682-73839943(-)$1	261	159	164	15.0000
HHHHH	chr11:67810665-67810942(+)$1	277	202	207	15.0000
[cccl	chr1:26799111-26799372(+)$1	261	21	26	15.0000
{GGGG	chr17:27224488-27224741(-)$1	253	127	132	15.0000
fffff	chr2:28974739-28975051(+)$1	312	7	12	15.0000
f22dd	chr3:37284660-37284985(+)$1	325	264	269	15.0000
eeeel	chr6:34664393-34664666(-)$1	273	153	158	15.0000
EEEEH	chr22:20105341-20105574(+)$1	233	74	79	15.0000
HHHHH	chr7:5569352-5569615(-)$1	263	193	198	15.0000
Fgggg	chr19:1012067-1012335(-)$1	268	93	98	15.0000
ggggg	chr1:11072611-11072901(+)$1	290	87	92	15.0000
f22gg	chr2:99224981-99225287(+)$1	306	239	244	15.0000
ddddd	chr7:23571458-23571671(-)$1	213	174	179	15.0000
DDDDA	chr19:1269236-1269507(+)$1	271	25	30	15.0000
cbbdd	chr5:137688338-137688618(+)$1	280	136	141	15.0000
[eeee	chr1:155904033-155904290(-)$1	257	24	29	15.0000
aeeee	chr2:231577487-231577742(+)$1	255	198	203	15.0000
hhhhC	chr10:7452754-7453066(-)$1	312	303	308	15.0000
iiiii	chr19:34919414-34919692(+)$1	278	152	157	15.0000
ccccc	chr8:139815533-139815792(-)$1	259	244	249	15.0000
bb]==	chr16:28962291-28962545(+)$1	254	139	144	15.0000
33ddd	chr15:64752849-64753145(+)$1	296	111	116	15.0000
{IIII	chr10:71075448-71075735(+)$1	287	89	94	15.0000
f]bbd	chr1:228290853-228291124(-)$1	271	168	173	15.0000

#DB
....)	chr19:56166205-56166472(+)$1	1	243	248	15.0000
.((((	chr1:249153072-249153315(-)$1	1	105	110	15.0000
(((((	chr20:61557315-61557600(-)$1	1	46	51	15.0000
.....	chr9:19380093-19380332(-)$1	1	94	99	15.0000
)))))	chr4:48782149-48782423(-)$1	1	266	271	15.0000
(((((	chr1:153919005-153919255(-)$1	1	12	17	15.0000
.))))	chr22:50699870-50700236(-)$1	1	209	214	15.0000
.((((	chr19:39138196-39138519(+)$1	1	228	233	15.0000
)))))	chr6:155055136-155055409(+)$1	1	206	211	15.0000
(((((	chr6:166755853-166756149(-)$1	1	163	168	15.0000
(((((	chr22:21348451-21348719(+)$1	1	0	5	15.0000
.))))	chr7:44887469-44887718(-)$1	1	205	210	15.0000
..(((	chr10:103113735-103113996(+)$1	1	64	69	15.0000
.))))	chr1:178994963-178995247(+)$1	1	260	265	15.0000
)))))	chr16:9185473-9185734(+)$1	1	200	205	15.0000
)))))	chr20:35724171-35724500(-)$1	1	234	239	15.0000
...))	chrX:153991206-153991459(+)$1	1	123	128	15.0000
...))	chr2:61765237-61765499(-)$1	1	3	8	15.0000
)))).	chr2:183902904-183903208(-)$1	1	298	303	15.0000
).)))	chr2:172379362-172379597(+)$1	1	162	167	15.0000
)))))	chr16:88799056-88799287(-)$1	1	208	213	15.0000
.((((	chr22:19419049-19419362(-)$1	1	38	43	15.0000
.((((	chr1:247094690-247094957(-)$1	1	44	49	15.0000
((((.	chr12:56122010-56122239(-)$1	1	102	107	15.0000
(((..	chr7:23571471-23571699(-)$1	1	202	207	15.0000
(((((	chr19:39926441-39926688(-)$1	1	86	91	15.0000
.((((	chr2:111435459-111435729(-)$1	1	0	5	15.0000
.))))	chr5:179049794-179050037(-)$1	1	181	186	15.0000
((.((	chr18:77867064-77867406(+)$1	1	4	9	15.0000
.))))	chr9:15422774-15423066(+)$1	1	124	129	15.0000
)))))	chr22:20105259-20105526(+)$1	1	156	161	15.0000
(((((	chr7:139044592-139044860(+)$1	1	145	150	15.0000
.))))	chr16:2587900-2588217(+)$1	1	208	213	15.0000
(.(((	chr7:148580936-148581194(-)$1	1	148	153	15.0000
)))..	chr5:131132508-131132810(-)$1	1	16	21	15.0000
))(((	chr21:27107062-27107334(-)$1	1	60	65	15.0000
(((((	chr17:73839682-73839943(-)$1	1	159	164	15.0000
)))))	chr11:67810665-67810942(+)$1	1	202	207	15.0000
.(((.	chr1:26799111-26799372(+)$1	1	21	26	15.0000
.((((	chr17:27224488-27224741(-)$1	1	127	132	15.0000
(((((	chr2:28974739-28975051(+)$1	1	7	12	15.0000
)..))	chr3:37284660-37284985(+)$1	1	264	269	15.0000
((((.	chr6:34664393-34664666(-)$1	1	153	158	15.0000
(((((	chr22:20105341-20105574(+)$1	1	74	79	15.0000
)))))	chr7:5569352-5569615(-)$1	1	193	198	15.0000
(((((	chr19:1012067-1012335(-)$1	1	93	98	15.0000
(((((	chr1:11072611-11072901(+)$1	1	87	92	15.0000
)..))	chr2:99224981-99225287(+)$1	1	239	244	15.0000
))))(	chr7:23571458-23571671(-)$1	1	174	179	15.0000
(((((	chr19:1269236-1269507(+)$1	1	25	30	15.0000
)))))	chr5:137688338-137688618(+)$1	1	136	141	15.0000
.((((	chr1:155904033-155904290(-)$1	1	24	29	15.0000
)))))	chr2:231577487-231577742(+)$1	1	198	203	15.0000
)))))	chr10:7452754-7453066(-)$1	1	303	308	15.0000
)))))	chr19:34919414-34919692(+)$1	1	152	157	15.0000
)))))	chr8:139815533-139815792(-)$1	1	244	249	15.0000
)).))	chr16:28962291-28962545(+)$1	1	139	144	15.0000
..)))	chr15:64752849-64753145(+)$1	1	111	116	15.0000
.((((	chr10:71075448-71075735(+)$1	1	89	94	15.0000
).))(	chr1:228290853-228291124(-)$1	1	168	173	15.0000

#PSSM
G : 0.95	g : 0.05	
G : 0.95	g : 0.05	
C : 0.95	c : 0.05	
C : 0.95	c : 0.05	
C : 0.95	c : 0.05	

#score	900.0000000000005
#seq	60
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_UTR_m3_run2.nuc.txt

#NT
AAAGAGAUG	chr4:761263-761517(-)$1	254	2	11	15.1818
AUGAAGAUG	chr10:120795370-120795639(-)$1	269	57	66	18.3636
AAAAACAUG	chr4:760919-761174(-)$1	255	104	113	14.2727
aagaagaug	chr4:174253073-174253289(-)$1	216	15	24	20.6363
GAUAAGAUG	chr1:241794975-241795223(-)$1	248	155	164	14.7272
AAGUAGAUG	chr21:39471289-39471542(-)$1	253	65	74	17.4545
UAGAAGAUG	chr3:160141303-160141538(+)$1	235	85	94	17.4545
AACCAGAUG	chr15:44063547-44063803(+)$1	256	216	225	14.7272
AUGAAGAUG	chr16:20693536-20693802(+)$1	266	236	245	18.3636
AUGAAGAUG	chr8:97243073-97243372(-)$1	299	122	131	18.3636

#otherMatches

#Struct PSSM
dmmmmdddd	chr15:40913964-40914222(+)$1	258	77	86	17.4545
GGGGG{CCC	chr4:761263-761517(-)$1	254	2	11	15.1818
nnnnbb:cc	chr10:120795370-120795639(-)$1	269	57	66	18.3636
c333dddd:	chr4:760919-761174(-)$1	255	104	113	14.2727
::DDDDPPP	chr4:174253073-174253289(-)$1	216	15	24	20.6363
ddd"""ccc	chr1:241794975-241795223(-)$1	248	155	164	14.7272
ccc[ccc%%	chr21:39471289-39471542(-)$1	253	65	74	17.4545
dd::::::F	chr3:160141303-160141538(+)$1	235	85	94	17.4545
fffnnnnnf	chr15:44063547-44063803(+)$1	256	216	225	14.7272
~~~CCC}CC	chr16:20693536-20693802(+)$1	266	236	245	18.3636
JJJJhhhhh	chr8:97243073-97243372(-)$1	299	122	131	18.3636

#DB
(....))))	chr15:40913964-40914222(+)$1	1	77	86	17.4545
(((((.(((	chr4:761263-761517(-)$1	1	2	11	15.1818
....)).((	chr10:120795370-120795639(-)$1	1	57	66	18.3636
)...)))).	chr4:760919-761174(-)$1	1	104	113	14.2727
..((((...	chr4:174253073-174253289(-)$1	1	15	24	20.6363
(((...(((	chr1:241794975-241795223(-)$1	1	155	164	14.7272
(((.(((..	chr21:39471289-39471542(-)$1	1	65	74	17.4545
))......(	chr3:160141303-160141538(+)$1	1	85	94	17.4545
(((.....)	chr15:44063547-44063803(+)$1	1	216	225	14.7272
...))).))	chr16:20693536-20693802(+)$1	1	236	245	18.3636
(((((((((	chr8:97243073-97243372(-)$1	1	122	131	18.3636

#PSSM
A : 0.63	C : 0.09	a : 0.09	G : 0.09	U : 0.09	
A : 0.63	U : 0.27	a : 0.09	
G : 0.54	A : 0.18	g : 0.09	U : 0.09	C : 0.09	
A : 0.63	G : 0.09	a : 0.09	U : 0.09	C : 0.09	
A : 0.90	a : 0.09	
G : 0.81	C : 0.09	g : 0.09	
A : 0.90	a : 0.09	
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	

#score	187.0000000000001
#seq	11
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_CDS_m1_run1.nuc.txt

#NT
GGGCU	chr8:145107380-145107660(-)$1	280	158	163	15.0000
GGGCU	chr1:1271450-1271727(-)$1	277	35	40	15.0000
GGGCU	chr16:1421474-1421744(-)$1	270	100	105	15.0000
GGGCU	chr8:66753527-66753835(-)$1	308	259	264	15.0000
GGGCU	chr7:1498849-1499105(-)$1	256	14	19	15.0000
GGGCU	chr16:2580805-2581056(+)$1	251	165	170	15.0000
GGGCU	chr19:47778071-47778313(+)$1	242	94	99	15.0000
GGGCU	chr1:36788108-36788386(+)$1	278	60	65	15.0000
gggcU	chr2:131113634-131113909(+)$1	275	18	23	15.0000
GGGCU	chr3:195622185-195622431(-)$1	246	23	28	15.0000
gggCU	chr1:22263567-22263808(-)$1	241	201	206	15.0000
GGGCU	chr7:856948-857329(+)$1	381	172	177	15.0000
GGGCU	chr17:7476604-7476859(+)$1	255	201	206	15.0000
GGGCU	chr11:66392697-66392933(+)$1	236	109	114	15.0000
GGGCU	chr19:1416330-1416606(+)$1	276	180	185	15.0000
GGGCU	chr3:49050519-49050786(+)$1	267	51	56	15.0000
GGGCU	chr12:123874571-123874816(+)$1	245	104	109	15.0000
GGGCU	chr16:2569086-2569329(+)$1	243	106	111	15.0000
GGGCU	chr2:242689422-242689707(+)$1	285	58	63	15.0000
GGGCU	chr4:1321255-1321527(+)$1	272	109	114	15.0000
GGGCU	chr9:135996304-135996562(-)$1	258	83	88	15.0000
GGGCU	chr7:77166729-77166971(+)$1	242	9	14	15.0000
GGGCU	chr11:66392979-66393226(+)$1	247	204	209	15.0000
GGGCU	chr17:80789837-80790128(+)$1	291	71	76	15.0000
GGGCU	chr22:18256213-18256483(-)$1	270	114	119	15.0000
GGGCU	chr21:44299436-44299698(-)$1	262	54	59	15.0000
GGGCU	chr17:7476697-7476955(+)$1	258	108	113	15.0000
GGGCU	chr9:140174190-140174434(+)$1	244	96	101	15.0000
GGGCU	chr12:123464886-123465170(+)$1	284	194	199	15.0000
GGGCU	chr7:1498799-1499049(-)$1	250	134	139	15.0000
GGGCU	chr12:112036485-112036706(-)$1	221	208	213	15.0000
GGGCU	chr1:32827552-32827792(-)$1	240	185	190	15.0000
GGGCU	chr19:3543229-3543512(-)$1	283	106	111	15.0000
GGGCU	chr1:228329197-228329466(+)$1	269	38	43	15.0000
GGGCU	chr11:66393977-66394232(+)$1	255	98	103	15.0000
GGGCU	chr19:2199740-2199993(+)$1	253	76	81	15.0000
GGGCU	chr12:133295290-133295567(+)$1	277	215	220	15.0000
GGGCU	chr19:863083-863375(+)$1	292	64	69	15.0000
GGGCU	chr2:24236014-24236277(+)$1	263	12	17	15.0000
GGGCU	chr12:31477774-31478041(-)$1	267	76	81	15.0000
GGGCU	chr12:49523942-49524185(-)$1	243	163	168	15.0000
GGGCU	chr2:219265225-219265524(+)$1	299	57	62	15.0000
GGGCU	chr19:18548480-18548749(-)$1	269	90	95	15.0000
GGGCU	chr1:36787827-36788081(+)$1	254	108	113	15.0000
GGGCU	chr22:50018401-50018662(-)$1	261	45	50	15.0000
GGGCU	chr19:1467821-1468078(-)$1	257	5	10	15.0000
GGGCU	chr7:1498714-1498969(-)$1	255	54	59	15.0000
GGGCU	chr12:54394024-54394296(+)$1	272	42	47	15.0000
GGGCU	chr19:36530488-36530766(+)$1	278	49	54	15.0000
GGGCU	chr11:61583885-61584211(+)$1	326	31	36	15.0000
GGGCU	chr9:133710735-133711015(+)$1	280	124	129	15.0000
GGGCU	chr19:59073433-59073704(+)$1	271	86	91	15.0000
GGGCU	chr7:5460767-5461001(-)$1	234	97	102	15.0000
GGGCU	chr16:88922509-88922798(-)$1	289	129	134	15.0000
GGGCU	chr19:1008639-1008931(-)$1	292	7	12	15.0000
gggcu	chr22:50016959-50017214(-)$1	255	97	102	15.0000
GGGCU	chr2:97533517-97533803(-)$1	286	36	41	15.0000
GGGCU	chr12:116714153-116714407(-)$1	254	122	127	15.0000
GGGCU	chr16:1835531-1835798(+)$1	267	91	96	15.0000
GGGCU	chr3:49050068-49050333(+)$1	265	107	112	15.0000

#otherMatches

#Struct PSSM
bbddd	chr1:1689814-1690095(-)$1	281	196	201	15.0000
ccc[b	chr8:145107380-145107660(-)$1	280	158	163	15.0000
ddd[f	chr1:1271450-1271727(-)$1	277	35	40	15.0000
a]hhh	chr16:1421474-1421744(-)$1	270	100	105	15.0000
eee""	chr8:66753527-66753835(-)$1	308	259	264	15.0000
iiiii	chr7:1498849-1499105(-)$1	256	14	19	15.0000
444ii	chr16:2580805-2581056(+)$1	251	165	170	15.0000
ndddd	chr19:47778071-47778313(+)$1	242	94	99	15.0000
b!!cc	chr1:36788108-36788386(+)$1	278	60	65	15.0000
GGGGG	chr2:131113634-131113909(+)$1	275	18	23	15.0000
bFFFF	chr3:195622185-195622431(-)$1	246	23	28	15.0000
b[ccc	chr1:22263567-22263808(-)$1	241	201	206	15.0000
cccgg	chr7:856948-857329(+)$1	381	172	177	15.0000
eemmm	chr17:7476604-7476859(+)$1	255	201	206	15.0000
fffff	chr11:66392697-66392933(+)$1	236	109	114	15.0000
333ii	chr19:1416330-1416606(+)$1	276	180	185	15.0000
FFFFF	chr3:49050519-49050786(+)$1	267	51	56	15.0000
iiiii	chr12:123874571-123874816(+)$1	245	104	109	15.0000
hhhyy	chr16:2569086-2569329(+)$1	243	106	111	15.0000
!cccp	chr2:242689422-242689707(+)$1	285	58	63	15.0000
hhhhh	chr4:1321255-1321527(+)$1	272	109	114	15.0000
:ffff	chr9:135996304-135996562(-)$1	258	83	88	15.0000
meeee	chr7:77166729-77166971(+)$1	242	9	14	15.0000
eeee3	chr11:66392979-66393226(+)$1	247	204	209	15.0000
lleee	chr17:80789837-80790128(+)$1	291	71	76	15.0000
ccc44	chr22:18256213-18256483(-)$1	270	114	119	15.0000
eeeee	chr21:44299436-44299698(-)$1	262	54	59	15.0000
[a[ee	chr17:7476697-7476955(+)$1	258	108	113	15.0000
dddoo	chr9:140174190-140174434(+)$1	244	96	101	15.0000
bFFFF	chr12:123464886-123465170(+)$1	284	194	199	15.0000
eeeee	chr7:1498799-1499049(-)$1	250	134	139	15.0000
dddd5	chr12:112036485-112036706(-)$1	221	208	213	15.0000
HHHHH	chr1:32827552-32827792(-)$1	240	185	190	15.0000
{JJJJ	chr19:3543229-3543512(-)$1	283	106	111	15.0000
mmccc	chr1:228329197-228329466(+)$1	269	38	43	15.0000
cccc[	chr11:66393977-66394232(+)$1	255	98	103	15.0000
22ccc	chr19:2199740-2199993(+)$1	253	76	81	15.0000
ddd]b	chr12:133295290-133295567(+)$1	277	215	220	15.0000
hhhh]	chr19:863083-863375(+)$1	292	64	69	15.0000
C{DDD	chr2:24236014-24236277(+)$1	263	12	17	15.0000
gggg"	chr12:31477774-31478041(-)$1	267	76	81	15.0000
DDDD~	chr12:49523942-49524185(-)$1	243	163	168	15.0000
ffffm	chr2:219265225-219265524(+)$1	299	57	62	15.0000
GGGGG	chr19:18548480-18548749(-)$1	269	90	95	15.0000
bbggg	chr1:36787827-36788081(+)$1	254	108	113	15.0000
pdddd	chr22:50018401-50018662(-)$1	261	45	50	15.0000
{IIII	chr19:1467821-1468078(-)$1	257	5	10	15.0000
eeeee	chr7:1498714-1498969(-)$1	255	54	59	15.0000
dcccp	chr12:54394024-54394296(+)$1	272	42	47	15.0000
c22ff	chr19:36530488-36530766(+)$1	278	49	54	15.0000
EEE::	chr11:61583885-61584211(+)$1	326	31	36	15.0000
dddd[	chr9:133710735-133711015(+)$1	280	124	129	15.0000
{EEEE	chr19:59073433-59073704(+)$1	271	86	91	15.0000
GGGGG	chr7:5460767-5461001(-)$1	234	97	102	15.0000
[ccce	chr16:88922509-88922798(-)$1	289	129	134	15.0000
GGGGG	chr19:1008639-1008931(-)$1	292	7	12	15.0000
JJJJJ	chr22:50016959-50017214(-)$1	255	97	102	15.0000
[ccc#	chr2:97533517-97533803(-)$1	286	36	41	15.0000
deeee	chr12:116714153-116714407(-)$1	254	122	127	15.0000
DDDD:	chr16:1835531-1835798(+)$1	267	91	96	15.0000
GGGGG	chr3:49050068-49050333(+)$1	265	107	112	15.0000

#DB
))(((	chr1:1689814-1690095(-)$1	1	196	201	15.0000
(((.(	chr8:145107380-145107660(-)$1	1	158	163	15.0000
(((.(	chr1:1271450-1271727(-)$1	1	35	40	15.0000
).)))	chr16:1421474-1421744(-)$1	1	100	105	15.0000
(((..	chr8:66753527-66753835(-)$1	1	259	264	15.0000
)))))	chr7:1498849-1499105(-)$1	1	14	19	15.0000
...))	chr16:2580805-2581056(+)$1	1	165	170	15.0000
.))))	chr19:47778071-47778313(+)$1	1	94	99	15.0000
(..((	chr1:36788108-36788386(+)$1	1	60	65	15.0000
(((((	chr2:131113634-131113909(+)$1	1	18	23	15.0000
)((((	chr3:195622185-195622431(-)$1	1	23	28	15.0000
(.(((	chr1:22263567-22263808(-)$1	1	201	206	15.0000
)))))	chr7:856948-857329(+)$1	1	172	177	15.0000
((...	chr17:7476604-7476859(+)$1	1	201	206	15.0000
(((((	chr11:66392697-66392933(+)$1	1	109	114	15.0000
...))	chr19:1416330-1416606(+)$1	1	180	185	15.0000
(((((	chr3:49050519-49050786(+)$1	1	51	56	15.0000
)))))	chr12:123874571-123874816(+)$1	1	104	109	15.0000
(((..	chr16:2569086-2569329(+)$1	1	106	111	15.0000
.(((.	chr2:242689422-242689707(+)$1	1	58	63	15.0000
)))))	chr4:1321255-1321527(+)$1	1	109	114	15.0000
.((((	chr9:135996304-135996562(-)$1	1	83	88	15.0000
.))))	chr7:77166729-77166971(+)$1	1	9	14	15.0000
)))).	chr11:66392979-66393226(+)$1	1	204	209	15.0000
..)))	chr17:80789837-80790128(+)$1	1	71	76	15.0000
)))..	chr22:18256213-18256483(-)$1	1	114	119	15.0000
(((((	chr21:44299436-44299698(-)$1	1	54	59	15.0000
.(.((	chr17:7476697-7476955(+)$1	1	108	113	15.0000
(((..	chr9:140174190-140174434(+)$1	1	96	101	15.0000
)))))	chr12:123464886-123465170(+)$1	1	194	199	15.0000
(((((	chr7:1498799-1499049(-)$1	1	134	139	15.0000
)))).	chr12:112036485-112036706(-)$1	1	208	213	15.0000
)))))	chr1:32827552-32827792(-)$1	1	185	190	15.0000
.((((	chr19:3543229-3543512(-)$1	1	106	111	15.0000
..)))	chr1:228329197-228329466(+)$1	1	38	43	15.0000
)(((.	chr11:66393977-66394232(+)$1	1	98	103	15.0000
..)))	chr19:2199740-2199993(+)$1	1	76	81	15.0000
))).)	chr12:133295290-133295567(+)$1	1	215	220	15.0000
)))).	chr19:863083-863375(+)$1	1	64	69	15.0000
(.(((	chr2:24236014-24236277(+)$1	1	12	17	15.0000
((((.	chr12:31477774-31478041(-)$1	1	76	81	15.0000
)))).	chr12:49523942-49524185(-)$1	1	163	168	15.0000
((((.	chr2:219265225-219265524(+)$1	1	57	62	15.0000
)))))	chr19:18548480-18548749(-)$1	1	90	95	15.0000
(((((	chr1:36787827-36788081(+)$1	1	108	113	15.0000
.))))	chr22:50018401-50018662(-)$1	1	45	50	15.0000
.((((	chr19:1467821-1468078(-)$1	1	5	10	15.0000
(((((	chr7:1498714-1498969(-)$1	1	54	59	15.0000
)(((.	chr12:54394024-54394296(+)$1	1	42	47	15.0000
)..))	chr19:36530488-36530766(+)$1	1	49	54	15.0000
(((..	chr11:61583885-61584211(+)$1	1	31	36	15.0000
((((.	chr9:133710735-133711015(+)$1	1	124	129	15.0000
.((((	chr19:59073433-59073704(+)$1	1	86	91	15.0000
)))))	chr7:5460767-5461001(-)$1	1	97	102	15.0000
.((((	chr16:88922509-88922798(-)$1	1	129	134	15.0000
(((((	chr19:1008639-1008931(-)$1	1	7	12	15.0000
(((((	chr22:50016959-50017214(-)$1	1	97	102	15.0000
.(((.	chr2:97533517-97533803(-)$1	1	36	41	15.0000
)((((	chr12:116714153-116714407(-)$1	1	122	127	15.0000
((((.	chr16:1835531-1835798(+)$1	1	91	96	15.0000
(((((	chr3:49050068-49050333(+)$1	1	107	112	15.0000

#PSSM
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
C : 0.96	c : 0.03	
U : 0.98	u : 0.01	

#score	915.0000000000001
#seq	61
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_UTR_m2_run1.nuc.txt

#NT
cacacacacacaca	chr4:1019051-1019405(+)$1	354	3	17	32.4310
cacacgcacacaca	chr11:2152708-2152910(-)$1	202	13	27	36.7413
cacacacacacaca	chr16:67209992-67210236(-)$1	244	214	228	32.4310
caccugcacacaca	chr11:2152502-2152704(-)$1	202	18	32	36.0517
cacaugcacacaca	chr11:2152646-2152848(-)$1	202	64	78	39.6724
cacacacacacaca	chr16:67209717-67209988(-)$1	271	0	14	32.4310
caccugcacacaca	chr11:2152672-2152874(-)$1	202	188	202	36.0517
cacaugcacacaca	chr11:2152688-2152893(-)$1	205	109	123	39.6724
caccugcacacaca	chr11:2152541-2152754(-)$1	213	68	82	36.0517
cacaugcacacaca	chr11:2153183-2153386(-)$1	203	184	198	39.6724
cacaugcacacaca	chr11:2152861-2153066(-)$1	205	20	34	39.6724
cacaugcacacaca	chr11:2153003-2153205(-)$1	202	3	17	39.6724
cacaugcacacaca	chr11:2152654-2152857(-)$1	203	3	17	39.6724
cacaugcacacaca	chr11:2153010-2153215(-)$1	205	13	27	39.6724
cacacgcacacaca	chr11:2153191-2153396(-)$1	205	184	198	36.7413
cacaugcacacaca	chr11:2153148-2153352(-)$1	204	150	164	39.6724
cacaugcacacaca	chr11:2153137-2153340(-)$1	203	138	152	39.6724
cacacgcacacaca	chr11:2152827-2153029(-)$1	202	132	146	36.7413
cacaugcgcacaca	chr11:2152470-2152676(-)$1	206	2	16	34.8448
cacaugcauacaca	chr21:46915813-46916040(+)$1	227	67	81	35.0172
cacaugcacacaca	chr11:2152629-2152834(-)$1	205	50	64	39.6724
cacaugcacacaca	chr11:2153176-2153378(-)$1	202	176	190	39.6724
cacaugcacacaca	chr11:2153092-2153294(-)$1	202	92	106	39.6724
cacacgcacacaca	chr11:2153196-2153400(-)$1	204	188	202	36.7413
cacaugcacacaca	chr8:27528894-27529124(+)$1	230	173	187	39.6724
cacaugcacacaca	chr11:2153001-2153203(-)$1	202	1	15	39.6724
cacaugcauacaca	chr21:46915799-46916013(+)$1	214	81	95	35.0172
cacaugcacacaca	chr11:2153088-2153290(-)$1	202	88	102	39.6724
caccugcacacaca	chr11:2152564-2152766(-)$1	202	80	94	36.0517
cacaugcacacaca	chr11:2152793-2153000(-)$1	207	11	25	39.6724
cacaugcacacaca	chr11:2153098-2153304(-)$1	206	102	116	39.6724
cacaugcacacaca	chr11:2152609-2152812(-)$1	203	28	42	39.6724
cacaugcacacaca	chr11:2152869-2153077(-)$1	208	31	45	39.6724
cacacacacacaca	chr16:20708886-20709174(+)$1	288	1	15	32.4310
cacaugcacacaca	chr11:2153022-2153225(-)$1	203	23	37	39.6724
cacacgcacacaca	chr11:2152695-2152898(-)$1	203	1	15	36.7413
cacaugcacacaca	chr11:2152639-2152844(-)$1	205	60	74	39.6724
cacaugcacacaca	chr11:2152661-2152863(-)$1	202	9	23	39.6724
cacaugcacacaca	chr11:2153085-2153288(-)$1	203	86	100	39.6724
cacaugcacacaca	chr11:2152851-2153053(-)$1	202	7	21	39.6724
cacaugcacacaca	chr11:2152582-2152788(-)$1	206	4	18	39.6724
cacacgcacacaca	chr11:2152705-2152908(-)$1	203	11	25	36.7413
cacaugcacacaca	chr11:2152612-2152816(-)$1	204	32	46	39.6724
caccugcacacaca	chr11:2152530-2152734(-)$1	204	48	62	36.0517
cacacgcacacaca	chr11:2152698-2152905(-)$1	207	8	22	36.7413
cacaugcacacaca	chr11:2152598-2152802(-)$1	204	18	32	39.6724
cacaugcacacaca	chr11:2152616-2152818(-)$1	202	34	48	39.6724
cacaugcacacaca	chr11:2152624-2152827(-)$1	203	43	57	39.6724
cacaugcacacaca	chr11:2153025-2153231(-)$1	206	29	43	39.6724
cacaugcacacaca	chr11:2153180-2153383(-)$1	203	181	195	39.6724
cacaugcacacaca	chr11:2152619-2152824(-)$1	205	40	54	39.6724
caccugcacacaca	chr11:2152566-2152768(-)$1	202	82	96	36.0517
cacacgcacacaca	chr11:2153189-2153391(-)$1	202	179	193	36.7413
cacaugcacacaca	chr11:2153005-2153208(-)$1	203	6	20	39.6724
caccugcacacaca	chr11:2152665-2152867(-)$1	202	181	195	36.0517
cacaugcacacaca	chr11:2153032-2153236(-)$1	204	34	48	39.6724
cacaugcacacaca	chr11:2153143-2153348(-)$1	205	146	160	39.6724

#otherMatches

#Struct PSSM
ooooccc:::::::	chr11:2152498-2152702(-)$1	204	16	30	36.0517
C:::::::::::::	chr4:1019051-1019405(+)$1	354	3	17	32.4310
bmmmmbb:::::::	chr11:2152708-2152910(-)$1	202	13	27	36.7413
::::::::::::::	chr16:67209992-67210236(-)$1	244	214	228	32.4310
ooooccc:::BB{C	chr11:2152502-2152704(-)$1	202	18	32	36.0517
ooooccc:::::::	chr11:2152646-2152848(-)$1	202	64	78	39.6724
::::::::::::::	chr16:67209717-67209988(-)$1	271	0	14	32.4310
ooooccc:::::::	chr11:2152672-2152874(-)$1	202	188	202	36.0517
ooooccc:::::::	chr11:2152688-2152893(-)$1	205	109	123	39.6724
ooooccc:::::::	chr11:2152541-2152754(-)$1	213	68	82	36.0517
::EEEEE|||||||	chr11:2153183-2153386(-)$1	203	184	198	39.6724
::::cccppppppp	chr11:2152861-2153066(-)$1	205	20	34	39.6724
::::CCC:::::::	chr11:2153003-2153205(-)$1	202	3	17	39.6724
::::cccppppppp	chr11:2152654-2152857(-)$1	203	3	17	39.6724
PPPPDDDD::::::	chr11:2153010-2153215(-)$1	205	13	27	39.6724
qqqqqbb:::::::	chr11:2153191-2153396(-)$1	205	184	198	36.7413
ooooccc:::::::	chr11:2153148-2153352(-)$1	204	150	164	39.6724
ooooccc:::::::	chr11:2153137-2153340(-)$1	203	138	152	39.6724
bmmmmbb:::::::	chr11:2152827-2153029(-)$1	202	132	146	36.7413
::::ddddqqqqqq	chr11:2152470-2152676(-)$1	206	2	16	34.8448
ff22dddd::::::	chr21:46915813-46916040(+)$1	227	67	81	35.0172
ooooccc:::::::	chr11:2152629-2152834(-)$1	205	50	64	39.6724
::EEEEE|||||||	chr11:2153176-2153378(-)$1	202	176	190	39.6724
ooooccc:::::::	chr11:2153092-2153294(-)$1	202	92	106	39.6724
qqqqqbb:::::::	chr11:2153196-2153400(-)$1	204	188	202	36.7413
ff!!ccc&&&&&&&	chr8:27528894-27529124(+)$1	230	173	187	39.6724
::::CCC:::::::	chr11:2153001-2153203(-)$1	202	1	15	39.6724
ff22dddd::::::	chr21:46915799-46916013(+)$1	214	81	95	35.0172
ooooccc:::::::	chr11:2153088-2153290(-)$1	202	88	102	39.6724
ooooccc:::::::	chr11:2152564-2152766(-)$1	202	80	94	36.0517
NNEEEEE:::::::	chr11:2152793-2153000(-)$1	207	11	25	39.6724
ooooccc:::::::	chr11:2153098-2153304(-)$1	206	102	116	39.6724
OOODDDD:::::::	chr11:2152609-2152812(-)$1	203	28	42	39.6724
::::cccppppppp	chr11:2152869-2153077(-)$1	208	31	45	39.6724
::::::::::::::	chr16:20708886-20709174(+)$1	288	1	15	32.4310
ooooccc:::::::	chr11:2153022-2153225(-)$1	203	23	37	39.6724
bmmmmbb:::::::	chr11:2152695-2152898(-)$1	203	1	15	36.7413
ooooccc:::::::	chr11:2152639-2152844(-)$1	205	60	74	39.6724
ooooccc:::::::	chr11:2152661-2152863(-)$1	202	9	23	39.6724
ooooccc:::::::	chr11:2153085-2153288(-)$1	203	86	100	39.6724
::::cccppppppp	chr11:2152851-2153053(-)$1	202	7	21	39.6724
::EEEEE:::::::	chr11:2152582-2152788(-)$1	206	4	18	39.6724
bmmmmbb:::::::	chr11:2152705-2152908(-)$1	203	11	25	36.7413
ooooccc:::::::	chr11:2152612-2152816(-)$1	204	32	46	39.6724
ooooccc:::::::	chr11:2152530-2152734(-)$1	204	48	62	36.0517
C::::bbppppppp	chr11:2152698-2152905(-)$1	207	8	22	36.7413
OOODDDD:::::::	chr11:2152598-2152802(-)$1	204	18	32	39.6724
ooooccc:::::::	chr11:2152616-2152818(-)$1	202	34	48	39.6724
ooooccc:::::::	chr11:2152624-2152827(-)$1	203	43	57	39.6724
ooooccc:::::::	chr11:2153025-2153231(-)$1	206	29	43	39.6724
::EEEEE|||||||	chr11:2153180-2153383(-)$1	203	181	195	39.6724
ooooccc:::::::	chr11:2152619-2152824(-)$1	205	40	54	39.6724
ooooccc:::::::	chr11:2152566-2152768(-)$1	202	82	96	36.0517
qqqqqbb:::::::	chr11:2153189-2153391(-)$1	202	179	193	36.7413
PPPPDDDD::::::	chr11:2153005-2153208(-)$1	203	6	20	39.6724
ooooccc:::::::	chr11:2152665-2152867(-)$1	202	181	195	36.0517
ooooccc:::::::	chr11:2153032-2153236(-)$1	204	34	48	39.6724
ooooccc:::::::	chr11:2153143-2153348(-)$1	205	146	160	39.6724

#DB
....))).......	chr11:2152498-2152702(-)$1	1	16	30	36.0517
(.............	chr4:1019051-1019405(+)$1	1	3	17	32.4310
(....)).......	chr11:2152708-2152910(-)$1	1	13	27	36.7413
..............	chr16:67209992-67210236(-)$1	1	214	228	32.4310
....)))...((.(	chr11:2152502-2152704(-)$1	1	18	32	36.0517
....))).......	chr11:2152646-2152848(-)$1	1	64	78	39.6724
..............	chr16:67209717-67209988(-)$1	1	0	14	32.4310
....))).......	chr11:2152672-2152874(-)$1	1	188	202	36.0517
....))).......	chr11:2152688-2152893(-)$1	1	109	123	39.6724
....))).......	chr11:2152541-2152754(-)$1	1	68	82	36.0517
..))))).......	chr11:2153183-2153386(-)$1	1	184	198	39.6724
....(((.......	chr11:2152861-2153066(-)$1	1	20	34	39.6724
....(((.......	chr11:2153003-2153205(-)$1	1	3	17	39.6724
....(((.......	chr11:2152654-2152857(-)$1	1	3	17	39.6724
....((((......	chr11:2153010-2153215(-)$1	1	13	27	39.6724
.....)).......	chr11:2153191-2153396(-)$1	1	184	198	36.7413
....))).......	chr11:2153148-2153352(-)$1	1	150	164	39.6724
....))).......	chr11:2153137-2153340(-)$1	1	138	152	39.6724
(....)).......	chr11:2152827-2153029(-)$1	1	132	146	36.7413
....((((......	chr11:2152470-2152676(-)$1	1	2	16	34.8448
))..))))......	chr21:46915813-46916040(+)$1	1	67	81	35.0172
....))).......	chr11:2152629-2152834(-)$1	1	50	64	39.6724
..))))).......	chr11:2153176-2153378(-)$1	1	176	190	39.6724
....))).......	chr11:2153092-2153294(-)$1	1	92	106	39.6724
.....)).......	chr11:2153196-2153400(-)$1	1	188	202	36.7413
((..(((.......	chr8:27528894-27529124(+)$1	1	173	187	39.6724
....(((.......	chr11:2153001-2153203(-)$1	1	1	15	39.6724
))..))))......	chr21:46915799-46916013(+)$1	1	81	95	35.0172
....))).......	chr11:2153088-2153290(-)$1	1	88	102	39.6724
....))).......	chr11:2152564-2152766(-)$1	1	80	94	36.0517
..(((((.......	chr11:2152793-2153000(-)$1	1	11	25	39.6724
....))).......	chr11:2153098-2153304(-)$1	1	102	116	39.6724
...((((.......	chr11:2152609-2152812(-)$1	1	28	42	39.6724
....(((.......	chr11:2152869-2153077(-)$1	1	31	45	39.6724
..............	chr16:20708886-20709174(+)$1	1	1	15	32.4310
....))).......	chr11:2153022-2153225(-)$1	1	23	37	39.6724
(....)).......	chr11:2152695-2152898(-)$1	1	1	15	36.7413
....))).......	chr11:2152639-2152844(-)$1	1	60	74	39.6724
....))).......	chr11:2152661-2152863(-)$1	1	9	23	39.6724
....))).......	chr11:2153085-2153288(-)$1	1	86	100	39.6724
....(((.......	chr11:2152851-2153053(-)$1	1	7	21	39.6724
..(((((.......	chr11:2152582-2152788(-)$1	1	4	18	39.6724
(....)).......	chr11:2152705-2152908(-)$1	1	11	25	36.7413
....))).......	chr11:2152612-2152816(-)$1	1	32	46	39.6724
....))).......	chr11:2152530-2152734(-)$1	1	48	62	36.0517
(....((.......	chr11:2152698-2152905(-)$1	1	8	22	36.7413
...((((.......	chr11:2152598-2152802(-)$1	1	18	32	39.6724
....))).......	chr11:2152616-2152818(-)$1	1	34	48	39.6724
....))).......	chr11:2152624-2152827(-)$1	1	43	57	39.6724
....))).......	chr11:2153025-2153231(-)$1	1	29	43	39.6724
..))))).......	chr11:2153180-2153383(-)$1	1	181	195	39.6724
....))).......	chr11:2152619-2152824(-)$1	1	40	54	39.6724
....))).......	chr11:2152566-2152768(-)$1	1	82	96	36.0517
.....)).......	chr11:2153189-2153391(-)$1	1	179	193	36.7413
....((((......	chr11:2153005-2153208(-)$1	1	6	20	39.6724
....))).......	chr11:2152665-2152867(-)$1	1	181	195	36.0517
....))).......	chr11:2153032-2153236(-)$1	1	34	48	39.6724
....))).......	chr11:2153143-2153348(-)$1	1	146	160	39.6724

#PSSM
c : 1.00	
a : 1.00	
c : 1.00	
a : 0.86	c : 0.13	
u : 0.79	c : 0.20	
g : 0.93	a : 0.06	
c : 1.00	
a : 0.98	g : 0.01	
c : 0.96	u : 0.03	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	

#score	2205.4827586206907
#seq	58
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_UTR_m2_run1.nuc.txt

#NT
CUU	chr6:44222088-44222338(-)$1	250	55	58	8.9999
CUU	chr14:77254047-77254305(-)$1	258	3	6	8.9999
CUU	chrX:20168970-20169226(-)$1	256	30	33	8.9999
CUU	chr12:1897159-1897465(+)$1	306	32	35	8.9999
CUU	chr19:57323836-57324072(-)$1	236	69	72	8.9999
CUU	chr13:30088066-30088278(-)$1	212	0	3	8.9999
CUU	chr16:52497780-52498081(-)$1	301	2	5	8.9999
CUU	chr12:113826939-113827227(+)$1	288	13	16	8.9999
CUU	chr2:54896602-54896853(+)$1	251	46	49	8.9999
CUU	chr17:53398311-53398577(+)$1	266	6	9	8.9999
CUU	chr15:91043899-91044162(+)$1	263	85	88	8.9999
CUU	chr10:28872279-28872535(+)$1	256	15	18	8.9999
CUU	chr3:23959240-23959442(+)$1	202	9	12	8.9999
CUU	chrX:117925799-117926134(+)$1	335	38	41	8.9999
CUU	chr9:100777767-100778037(+)$1	270	103	106	8.9999
CUU	chr10:88811231-88811533(-)$1	302	16	19	8.9999
CUU	chr7:94296469-94296695(+)$1	226	13	16	8.9999
CUU	chrX:115592338-115592634(+)$1	296	39	42	8.9999
CUU	chr20:31033820-31034090(-)$1	270	34	37	8.9999
CUU	chr2:43450809-43451061(-)$1	252	18	21	8.9999
CUU	chr12:46582560-46582833(-)$1	273	14	17	8.9999
CUU	chr2:43450873-43451093(-)$1	220	50	53	8.9999
CUU	chr11:88026964-88027258(-)$1	294	6	9	8.9999
CUU	chr7:94296495-94296749(+)$1	254	22	25	8.9999
CUU	chr12:46582097-46582338(-)$1	241	13	16	8.9999
CUU	chr22:21141552-21141803(+)$1	251	67	70	8.9999
CUU	chr5:55238396-55238634(-)$1	238	42	45	8.9999
CUU	chr20:48744410-48744638(-)$1	228	11	14	8.9999
CUU	chr12:111894917-111895262(-)$1	345	81	84	8.9999
CUU	chr6:142764998-142765224(+)$1	226	50	53	8.9999
cuu	chr20:60550478-60550758(-)$1	280	2	5	8.9999
CUU	chr2:27439758-27439976(+)$1	218	19	22	8.9999
CUU	chr5:55236290-55236544(-)$1	254	33	36	8.9999
CUU	chr2:160626060-160626304(-)$1	244	3	6	8.9999
CUU	chr20:34214089-34214346(-)$1	257	23	26	8.9999
CUU	chr3:186793540-186793778(+)$1	238	6	9	8.9999
cuu	chr5:172743056-172743297(-)$1	241	79	82	8.9999
CUU	chr11:69468705-69468952(+)$1	247	215	218	8.9999
CUU	chr12:56669724-56670016(-)$1	292	2	5	8.9999
CUU	chr5:115782157-115782408(-)$1	251	51	54	8.9999
CUU	chr3:186338770-186339024(+)$1	254	30	33	8.9999
CUU	chr5:149781440-149781672(-)$1	232	10	13	8.9999
CUU	chr8:22278554-22278769(+)$1	215	63	66	8.9999
CUU	chr6:64290438-64290749(+)$1	311	9	12	8.9999
CUU	chr6:132211926-132212157(+)$1	231	3	6	8.9999
CUU	chr17:48458986-48459210(-)$1	224	53	56	8.9999
CUU	chr7:6509213-6509485(-)$1	272	5	8	8.9999
CUU	chr5:74076052-74076406(-)$1	354	13	16	8.9999
CUU	chr10:28824567-28824787(+)$1	220	127	130	8.9999
CUU	chr19:4360711-4360974(-)$1	263	87	90	8.9999
CUU	chr8:101721615-101721843(-)$1	228	8	11	8.9999
CUU	chr8:8641131-8641437(-)$1	306	47	50	8.9999
CUU	chr5:78075571-78075868(-)$1	297	40	43	8.9999
CUU	chr19:583122-583337(+)$1	215	34	37	8.9999
CUU	chr13:113539096-113539345(+)$1	249	144	147	8.9999
CUU	chr2:171822330-171822581(+)$1	251	3	6	8.9999
CUU	chr5:154194161-154194380(+)$1	219	5	8	8.9999
CUU	chr7:94296436-94296669(+)$1	233	2	5	8.9999
CUU	chr2:43450861-43451073(-)$1	212	30	33	8.9999
CUU	chr10:60993963-60994247(+)$1	284	11	14	8.9999
CUU	chr5:68849469-68849722(+)$1	253	80	83	8.9999
CUU	chr1:153921688-153921931(-)$1	243	21	24	8.9999
CUU	chr7:92237072-92237302(-)$1	230	29	32	8.9999
CUU	chr6:42906712-42907052(+)$1	340	4	7	8.9999
CUU	chr2:237032669-237032923(+)$1	254	12	15	8.9999
CUU	chr18:56996432-56996680(-)$1	248	16	19	8.9999
CUU	chr2:20401582-20401842(-)$1	260	21	24	8.9999
CUU	chr16:89981303-89981553(+)$1	250	155	158	8.9999
CUU	chr8:109229473-109229789(-)$1	316	2	5	8.9999
CUU	chr5:38934307-38934562(+)$1	255	55	58	8.9999
CUU	chr7:94295569-94295785(+)$1	216	8	11	8.9999
CUU	chr1:183112985-183113239(+)$1	254	14	17	8.9999
CUU	chr17:37008817-37009031(-)$1	214	37	40	8.9999
CUU	chr9:33927740-33928019(-)$1	279	14	17	8.9999
CUU	chr19:14625959-14626225(-)$1	266	103	106	8.9999
CUU	chr16:31102131-31102381(-)$1	250	28	31	8.9999
CUU	chr1:52227530-52227743(+)$1	213	44	47	8.9999
CUU	chr12:26490517-26490763(-)$1	246	182	185	8.9999
CUU	chr15:58888884-58889133(-)$1	249	19	22	8.9999
CUU	chr5:55233986-55234251(-)$1	265	51	54	8.9999
CUU	chr17:48458690-48458947(-)$1	257	33	36	8.9999
CUU	chr1:150938261-150938498(-)$1	237	6	9	8.9999
CUU	chr11:102272797-102273038(-)$1	241	7	10	8.9999
CUU	chr12:96410774-96410993(-)$1	219	72	75	8.9999
CUU	chr14:89747209-89747458(-)$1	249	6	9	8.9999
CUU	chr12:56496977-56497230(+)$1	253	43	46	8.9999
CUU	chr11:46698621-46698896(-)$1	275	6	9	8.9999
CUU	chr6:3272046-3272288(-)$1	242	1	4	8.9999
CUU	chr19:10395817-10396137(+)$1	320	167	170	8.9999
CUU	chr18:56995543-56995778(-)$1	235	59	62	8.9999
CUU	chr12:53861488-53861691(+)$1	203	22	25	8.9999
CUU	chr1:43392132-43392356(-)$1	224	1	4	8.9999
cuu	chr6:160102061-160102320(-)$1	259	1	4	8.9999
CUU	chr7:92235627-92235874(-)$1	247	76	79	8.9999
cuu	chr4:57326263-57326530(+)$1	267	92	95	8.9999
CUU	chr5:172378193-172378441(+)$1	248	77	80	8.9999
CUU	chr7:100781511-100781819(+)$1	308	7	10	8.9999
CUU	chr5:149933347-149933596(+)$1	249	11	14	8.9999

#otherMatches

#Struct PSSM
:::	chr11:64880930-64881167(+)$1	237	48	51	8.9999
rrr	chr6:44222088-44222338(-)$1	250	55	58	8.9999
BKK	chr14:77254047-77254305(-)$1	258	3	6	8.9999
+++	chrX:20168970-20169226(-)$1	256	30	33	8.9999
[bb	chr12:1897159-1897465(+)$1	306	32	35	8.9999
fff	chr19:57323836-57324072(-)$1	236	69	72	8.9999
:::	chr13:30088066-30088278(-)$1	212	0	3	8.9999
KKE	chr16:52497780-52498081(-)$1	301	2	5	8.9999
cnn	chr12:113826939-113827227(+)$1	288	13	16	8.9999
22c	chr2:54896602-54896853(+)$1	251	46	49	8.9999
HHH	chr17:53398311-53398577(+)$1	266	6	9	8.9999
eee	chr15:91043899-91044162(+)$1	263	85	88	8.9999
FFF	chr10:28872279-28872535(+)$1	256	15	18	8.9999
hhs	chr3:23959240-23959442(+)$1	202	9	12	8.9999
b]f	chrX:117925799-117926134(+)$1	335	38	41	8.9999
ccc	chr9:100777767-100778037(+)$1	270	103	106	8.9999
{GG	chr10:88811231-88811533(-)$1	302	16	19	8.9999
OOO	chr7:94296469-94296695(+)$1	226	13	16	8.9999
eee	chrX:115592338-115592634(+)$1	296	39	42	8.9999
OOO	chr20:31033820-31034090(-)$1	270	34	37	8.9999
###	chr2:43450809-43451061(-)$1	252	18	21	8.9999
fff	chr12:46582560-46582833(-)$1	273	14	17	8.9999
###	chr2:43450873-43451093(-)$1	220	50	53	8.9999
EEE	chr11:88026964-88027258(-)$1	294	6	9	8.9999
UUU	chr7:94296495-94296749(+)$1	254	22	25	8.9999
:::	chr12:46582097-46582338(-)$1	241	13	16	8.9999
F::	chr22:21141552-21141803(+)$1	251	67	70	8.9999
"""	chr5:55238396-55238634(-)$1	238	42	45	8.9999
CC{	chr20:48744410-48744638(-)$1	228	11	14	8.9999
d::	chr12:111894917-111895262(-)$1	345	81	84	8.9999
:::	chr6:142764998-142765224(+)$1	226	50	53	8.9999
:::	chr20:60550478-60550758(-)$1	280	2	5	8.9999
b[e	chr2:27439758-27439976(+)$1	218	19	22	8.9999
HHH	chr5:55236290-55236544(-)$1	254	33	36	8.9999
:::	chr2:160626060-160626304(-)$1	244	3	6	8.9999
:::	chr20:34214089-34214346(-)$1	257	23	26	8.9999
DKK	chr3:186793540-186793778(+)$1	238	6	9	8.9999
2ee	chr5:172743056-172743297(-)$1	241	79	82	8.9999
cc:	chr11:69468705-69468952(+)$1	247	215	218	8.9999
:::	chr12:56669724-56670016(-)$1	292	2	5	8.9999
+++	chr5:115782157-115782408(-)$1	251	51	54	8.9999
drr	chr3:186338770-186339024(+)$1	254	30	33	8.9999
EEE	chr5:149781440-149781672(-)$1	232	10	13	8.9999
eee	chr8:22278554-22278769(+)$1	215	63	66	8.9999
:GG	chr6:64290438-64290749(+)$1	311	9	12	8.9999
eem	chr6:132211926-132212157(+)$1	231	3	6	8.9999
eee	chr17:48458986-48459210(-)$1	224	53	56	8.9999
::f	chr7:6509213-6509485(-)$1	272	5	8	8.9999
ggg	chr5:74076052-74076406(-)$1	354	13	16	8.9999
hhh	chr10:28824567-28824787(+)$1	220	127	130	8.9999
bbf	chr19:4360711-4360974(-)$1	263	87	90	8.9999
cmm	chr8:101721615-101721843(-)$1	228	8	11	8.9999
iii	chr8:8641131-8641437(-)$1	306	47	50	8.9999
ddd	chr5:78075571-78075868(-)$1	297	40	43	8.9999
hhh	chr19:583122-583337(+)$1	215	34	37	8.9999
ee!	chr13:113539096-113539345(+)$1	249	144	147	8.9999
:::	chr2:171822330-171822581(+)$1	251	3	6	8.9999
ess	chr5:154194161-154194380(+)$1	219	5	8	8.9999
cnn	chr7:94296436-94296669(+)$1	233	2	5	8.9999
###	chr2:43450861-43451073(-)$1	212	30	33	8.9999
CCC	chr10:60993963-60994247(+)$1	284	11	14	8.9999
ddd	chr5:68849469-68849722(+)$1	253	80	83	8.9999
:::	chr1:153921688-153921931(-)$1	243	21	24	8.9999
e::	chr7:92237072-92237302(-)$1	230	29	32	8.9999
:::	chr6:42906712-42907052(+)$1	340	4	7	8.9999
fll	chr2:237032669-237032923(+)$1	254	12	15	8.9999
ccc	chr18:56996432-56996680(-)$1	248	16	19	8.9999
eee	chr2:20401582-20401842(-)$1	260	21	24	8.9999
fff	chr16:89981303-89981553(+)$1	250	155	158	8.9999
FFF	chr8:109229473-109229789(-)$1	316	2	5	8.9999
vvv	chr5:38934307-38934562(+)$1	255	55	58	8.9999
:::	chr7:94295569-94295785(+)$1	216	8	11	8.9999
$$$	chr1:183112985-183113239(+)$1	254	14	17	8.9999
^^^	chr17:37008817-37009031(-)$1	214	37	40	8.9999
err	chr9:33927740-33928019(-)$1	279	14	17	8.9999
)))	chr19:14625959-14626225(-)$1	266	103	106	8.9999
ggg	chr16:31102131-31102381(-)$1	250	28	31	8.9999
bbq	chr1:52227530-52227743(+)$1	213	44	47	8.9999
qqq	chr12:26490517-26490763(-)$1	246	182	185	8.9999
mme	chr15:58888884-58889133(-)$1	249	19	22	8.9999
rrr	chr5:55233986-55234251(-)$1	265	51	54	8.9999
GGG	chr17:48458690-48458947(-)$1	257	33	36	8.9999
:::	chr1:150938261-150938498(-)$1	237	6	9	8.9999
h##	chr11:102272797-102273038(-)$1	241	7	10	8.9999
]ee	chr12:96410774-96410993(-)$1	219	72	75	8.9999
:::	chr14:89747209-89747458(-)$1	249	6	9	8.9999
eee	chr12:56496977-56497230(+)$1	253	43	46	8.9999
dd[	chr11:46698621-46698896(-)$1	275	6	9	8.9999
:::	chr6:3272046-3272288(-)$1	242	1	4	8.9999
qqq	chr19:10395817-10396137(+)$1	320	167	170	8.9999
:::	chr18:56995543-56995778(-)$1	235	59	62	8.9999
fff	chr12:53861488-53861691(+)$1	203	22	25	8.9999
:::	chr1:43392132-43392356(-)$1	224	1	4	8.9999
:::	chr6:160102061-160102320(-)$1	259	1	4	8.9999
MMM	chr7:92235627-92235874(-)$1	247	76	79	8.9999
e^^	chr4:57326263-57326530(+)$1	267	92	95	8.9999
FFF	chr5:172378193-172378441(+)$1	248	77	80	8.9999
:::	chr7:100781511-100781819(+)$1	308	7	10	8.9999
d::	chr5:149933347-149933596(+)$1	249	11	14	8.9999

#DB
...	chr11:64880930-64881167(+)$1	1	48	51	8.9999
...	chr6:44222088-44222338(-)$1	1	55	58	8.9999
(..	chr14:77254047-77254305(-)$1	1	3	6	8.9999
...	chrX:20168970-20169226(-)$1	1	30	33	8.9999
.((	chr12:1897159-1897465(+)$1	1	32	35	8.9999
)))	chr19:57323836-57324072(-)$1	1	69	72	8.9999
...	chr13:30088066-30088278(-)$1	1	0	3	8.9999
..(	chr16:52497780-52498081(-)$1	1	2	5	8.9999
(..	chr12:113826939-113827227(+)$1	1	13	16	8.9999
..)	chr2:54896602-54896853(+)$1	1	46	49	8.9999
(((	chr17:53398311-53398577(+)$1	1	6	9	8.9999
(((	chr15:91043899-91044162(+)$1	1	85	88	8.9999
(((	chr10:28872279-28872535(+)$1	1	15	18	8.9999
((.	chr3:23959240-23959442(+)$1	1	9	12	8.9999
).)	chrX:117925799-117926134(+)$1	1	38	41	8.9999
)))	chr9:100777767-100778037(+)$1	1	103	106	8.9999
.((	chr10:88811231-88811533(-)$1	1	16	19	8.9999
...	chr7:94296469-94296695(+)$1	1	13	16	8.9999
(((	chrX:115592338-115592634(+)$1	1	39	42	8.9999
...	chr20:31033820-31034090(-)$1	1	34	37	8.9999
...	chr2:43450809-43451061(-)$1	1	18	21	8.9999
(((	chr12:46582560-46582833(-)$1	1	14	17	8.9999
...	chr2:43450873-43451093(-)$1	1	50	53	8.9999
(((	chr11:88026964-88027258(-)$1	1	6	9	8.9999
...	chr7:94296495-94296749(+)$1	1	22	25	8.9999
...	chr12:46582097-46582338(-)$1	1	13	16	8.9999
(..	chr22:21141552-21141803(+)$1	1	67	70	8.9999
...	chr5:55238396-55238634(-)$1	1	42	45	8.9999
((.	chr20:48744410-48744638(-)$1	1	11	14	8.9999
)..	chr12:111894917-111895262(-)$1	1	81	84	8.9999
...	chr6:142764998-142765224(+)$1	1	50	53	8.9999
...	chr20:60550478-60550758(-)$1	1	2	5	8.9999
(.(	chr2:27439758-27439976(+)$1	1	19	22	8.9999
(((	chr5:55236290-55236544(-)$1	1	33	36	8.9999
...	chr2:160626060-160626304(-)$1	1	3	6	8.9999
...	chr20:34214089-34214346(-)$1	1	23	26	8.9999
(..	chr3:186793540-186793778(+)$1	1	6	9	8.9999
.))	chr5:172743056-172743297(-)$1	1	79	82	8.9999
)).	chr11:69468705-69468952(+)$1	1	215	218	8.9999
...	chr12:56669724-56670016(-)$1	1	2	5	8.9999
...	chr5:115782157-115782408(-)$1	1	51	54	8.9999
(..	chr3:186338770-186339024(+)$1	1	30	33	8.9999
(((	chr5:149781440-149781672(-)$1	1	10	13	8.9999
)))	chr8:22278554-22278769(+)$1	1	63	66	8.9999
.((	chr6:64290438-64290749(+)$1	1	9	12	8.9999
((.	chr6:132211926-132212157(+)$1	1	3	6	8.9999
)))	chr17:48458986-48459210(-)$1	1	53	56	8.9999
..(	chr7:6509213-6509485(-)$1	1	5	8	8.9999
(((	chr5:74076052-74076406(-)$1	1	13	16	8.9999
)))	chr10:28824567-28824787(+)$1	1	127	130	8.9999
)))	chr19:4360711-4360974(-)$1	1	87	90	8.9999
(..	chr8:101721615-101721843(-)$1	1	8	11	8.9999
(((	chr8:8641131-8641437(-)$1	1	47	50	8.9999
(((	chr5:78075571-78075868(-)$1	1	40	43	8.9999
(((	chr19:583122-583337(+)$1	1	34	37	8.9999
((.	chr13:113539096-113539345(+)$1	1	144	147	8.9999
...	chr2:171822330-171822581(+)$1	1	3	6	8.9999
(..	chr5:154194161-154194380(+)$1	1	5	8	8.9999
(..	chr7:94296436-94296669(+)$1	1	2	5	8.9999
...	chr2:43450861-43451073(-)$1	1	30	33	8.9999
(((	chr10:60993963-60994247(+)$1	1	11	14	8.9999
(((	chr5:68849469-68849722(+)$1	1	80	83	8.9999
...	chr1:153921688-153921931(-)$1	1	21	24	8.9999
)..	chr7:92237072-92237302(-)$1	1	29	32	8.9999
...	chr6:42906712-42907052(+)$1	1	4	7	8.9999
(..	chr2:237032669-237032923(+)$1	1	12	15	8.9999
(((	chr18:56996432-56996680(-)$1	1	16	19	8.9999
)))	chr2:20401582-20401842(-)$1	1	21	24	8.9999
)))	chr16:89981303-89981553(+)$1	1	155	158	8.9999
(((	chr8:109229473-109229789(-)$1	1	2	5	8.9999
...	chr5:38934307-38934562(+)$1	1	55	58	8.9999
...	chr7:94295569-94295785(+)$1	1	8	11	8.9999
...	chr1:183112985-183113239(+)$1	1	14	17	8.9999
...	chr17:37008817-37009031(-)$1	1	37	40	8.9999
(..	chr9:33927740-33928019(-)$1	1	14	17	8.9999
...	chr19:14625959-14626225(-)$1	1	103	106	8.9999
)))	chr16:31102131-31102381(-)$1	1	28	31	8.9999
((.	chr1:52227530-52227743(+)$1	1	44	47	8.9999
...	chr12:26490517-26490763(-)$1	1	182	185	8.9999
..)	chr15:58888884-58889133(-)$1	1	19	22	8.9999
...	chr5:55233986-55234251(-)$1	1	51	54	8.9999
(((	chr17:48458690-48458947(-)$1	1	33	36	8.9999
...	chr1:150938261-150938498(-)$1	1	6	9	8.9999
(..	chr11:102272797-102273038(-)$1	1	7	10	8.9999
.))	chr12:96410774-96410993(-)$1	1	72	75	8.9999
...	chr14:89747209-89747458(-)$1	1	6	9	8.9999
)))	chr12:56496977-56497230(+)$1	1	43	46	8.9999
((.	chr11:46698621-46698896(-)$1	1	6	9	8.9999
...	chr6:3272046-3272288(-)$1	1	1	4	8.9999
...	chr19:10395817-10396137(+)$1	1	167	170	8.9999
...	chr18:56995543-56995778(-)$1	1	59	62	8.9999
(((	chr12:53861488-53861691(+)$1	1	22	25	8.9999
...	chr1:43392132-43392356(-)$1	1	1	4	8.9999
...	chr6:160102061-160102320(-)$1	1	1	4	8.9999
...	chr7:92235627-92235874(-)$1	1	76	79	8.9999
(..	chr4:57326263-57326530(+)$1	1	92	95	8.9999
(((	chr5:172378193-172378441(+)$1	1	77	80	8.9999
...	chr7:100781511-100781819(+)$1	1	7	10	8.9999
)..	chr5:149933347-149933596(+)$1	1	11	14	8.9999

#PSSM
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_transcript_m3_run2.nuc.txt

#NT
uuugcuuuu	chr10:99909531-99909787(+)$1	256	197	206	17.3061
uuuguuugu	chr2:132380082-132380378(+)$1	296	207	216	14.2448
UGUGGUUGU	chr2:55262067-55262291(-)$1	224	25	34	14.8571
ugugguguu	chr8:126212802-126213124(+)$1	322	120	129	14.3469
uuuguuuuu	chr1:212939978-212940225(-)$1	247	35	44	18.1224
guugguuuu	chr10:76984083-76984373(+)$1	290	14	23	16.1836
uuuggauuu	chr6:31376995-31377259(+)$1	264	168	177	17.1020
UUUGGUGUU	chr17:29632159-29632448(+)$1	289	147	156	16.3877
UUUGGUUUU	chr3:72493413-72493687(-)$1	274	63	72	20.7755
uuugguugu	chr16:10507881-10508128(+)$1	247	204	213	16.8979
uuuuguuuu	chr2:33197163-33197397(+)$1	234	16	25	16.6938
uuuguguuu	chr21:11174049-11174285(+)$1	236	216	225	14.8571
auugguuuu	chr6:111754214-111754451(-)$1	237	17	26	16.2857
UGUGGUGUU	chr10:126764517-126764771(-)$1	254	14	23	14.3469
UUUGGUUGU	chr11:68268167-68268464(+)$1	297	107	116	16.8979
uaugguuuu	chr4:151798859-151799098(-)$1	239	55	64	17.8163
uguuguuuu	chr19:21228337-21228575(+)$1	238	11	20	14.6530
uuugguuuu	chr8:100036760-100037007(+)$1	247	95	104	20.7755
uuuguguuu	chr12:28436615-28436850(+)$1	235	19	28	14.8571
ucuguuuuu	chr8:52778761-52779007(-)$1	246	19	28	15.0612
uuugucuuu	chr7:107174750-107175036(-)$1	286	21	30	14.5510
uuuaguuuu	chr2:183863058-183863289(-)$1	231	116	125	16.3877
uuuggcuuu	chr7:156496965-156497256(-)$1	291	162	171	17.2040
uuugguuug	chr16:24752805-24753045(+)$1	240	22	31	16.1836
ucuguuuuu	chr1:174277781-174278023(+)$1	242	91	100	15.0612
uguggguuu	chr6:146220439-146220683(-)$1	244	159	168	15.4693
uuugguuug	chr7:91634466-91634789(+)$1	323	57	66	16.1836
UGUGGUUUU	chr12:132477382-132477654(+)$1	272	35	44	18.7346
uaugguuuu	chr18:9229709-9229930(+)$1	221	17	26	17.8163
uuugguugu	chr12:69916202-69916463(+)$1	261	187	196	16.8979
UGUGGGUUU	chr12:110722309-110722519(+)$1	210	53	62	15.4693
uguggguuu	chr21:15879201-15879465(-)$1	264	69	78	15.4693
uguuguuuu	chr5:126881484-126881804(+)$1	320	44	53	14.6530
UUAGGUUUU	chr4:6956851-6957140(+)$1	289	161	170	15.9795
ugugguuuu	chr4:48403109-48403364(+)$1	255	1	10	18.7346
uauguuuuu	chr11:102286360-102286611(-)$1	251	16	25	15.1632
UUUGUAUUU	chr14:54902615-54902850(-)$1	235	118	127	14.4489
uuuuguuuu	chr7:91595443-91595690(+)$1	247	93	102	16.6938
AUUGGUUUU	chr10:35639351-35639616(+)$1	265	100	109	16.2857
uuuggguuu	chr18:9163147-9163386(+)$1	239	20	29	17.5102
ugugguuuu	chr14:68536579-68536824(+)$1	245	141	150	18.7346
uuuggcuuu	chr7:27658662-27658906(-)$1	244	22	31	17.2040
uuugguuuu	chr7:116600914-116601161(+)$1	247	86	95	20.7755
uuugauuuu	chr15:44732157-44732416(+)$1	259	173	182	17.2040
ugugguuuu	chr5:80586041-80586292(-)$1	251	3	12	18.7346
uuugcuuuu	chr1:91423123-91423432(-)$1	309	277	286	17.3061
uuugguuau	chr1:227764235-227764481(+)$1	246	218	227	16.4897
uuuguuuuu	chr7:7243659-7243909(+)$1	250	87	96	18.1224

#otherMatches

#Struct PSSM
=========	chr1:20235671-20235937(+)$1	266	89	98	20.7755
>>ccc4444	chr10:99909531-99909787(+)$1	256	197	206	17.3061
)))))))cc	chr2:132380082-132380378(+)$1	296	207	216	14.2448
BB{BBKKFF	chr2:55262067-55262291(-)$1	224	25	34	14.8571
ddffffff+	chr8:126212802-126213124(+)$1	322	120	129	14.3469
::::hhhhh	chr1:212939978-212940225(-)$1	247	35	44	18.1224
:CCCHHHHH	chr10:76984083-76984373(+)$1	290	14	23	16.1836
!!bbooooo	chr6:31376995-31377259(+)$1	264	168	177	17.1020
ggggooooo	chr17:29632159-29632448(+)$1	289	147	156	16.3877
GGGGGGGLL	chr3:72493413-72493687(-)$1	274	63	72	20.7755
dd!!cccmm	chr16:10507881-10508128(+)$1	247	204	213	16.8979
:::::::::	chr2:33197163-33197397(+)$1	234	16	25	16.6938
EEEE~~~~J	chr21:11174049-11174285(+)$1	236	216	225	14.8571
GGGGG::::	chr6:111754214-111754451(-)$1	237	17	26	16.2857
f:::DDDDM	chr10:126764517-126764771(-)$1	254	14	23	14.3469
hhhhhhhdd	chr11:68268167-68268464(+)$1	297	107	116	16.8979
eeeee::::	chr4:151798859-151799098(-)$1	239	55	64	17.8163
:::::::::	chr19:21228337-21228575(+)$1	238	11	20	14.6530
666ccc:::	chr8:100036760-100037007(+)$1	247	95	104	20.7755
IIII:ccc[	chr12:28436615-28436850(+)$1	235	19	28	14.8571
HHHHHKKDD	chr8:52778761-52779007(-)$1	246	19	28	15.0612
ffff[bb[c	chr7:107174750-107175036(-)$1	286	21	30	14.5510
:::::::ee	chr2:183863058-183863289(-)$1	231	116	125	16.3877
mmmddddGG	chr7:156496965-156497256(-)$1	291	162	171	17.2040
LLLDDDD::	chr16:24752805-24753045(+)$1	240	22	31	16.1836
dd666666e	chr1:174277781-174278023(+)$1	242	91	100	15.0612
ff]ccc22b	chr6:146220439-146220683(-)$1	244	159	168	15.4693
eeeee[bb[	chr7:91634466-91634789(+)$1	323	57	66	16.1836
eeooooooe	chr12:132477382-132477654(+)$1	272	35	44	18.7346
:ggggggg'	chr18:9229709-9229930(+)$1	221	17	26	17.8163
444eeeee>	chr12:69916202-69916463(+)$1	261	187	196	16.8979
Ceeeee"""	chr12:110722309-110722519(+)$1	210	53	62	15.4693
2ffffff::	chr21:15879201-15879465(-)$1	264	69	78	15.4693
i::::::::	chr5:126881484-126881804(+)$1	320	44	53	14.6530
rrrrrrrrc	chr4:6956851-6957140(+)$1	289	161	170	15.9795
BLLLAKKJJ	chr4:48403109-48403364(+)$1	255	1	10	18.7346
[ddddoooo	chr11:102286360-102286611(-)$1	251	16	25	15.1632
===ddddcc	chr14:54902615-54902850(-)$1	235	118	127	14.4489
iiiiiiii!	chr7:91595443-91595690(+)$1	247	93	102	16.6938
LGGGGGGG:	chr10:35639351-35639616(+)$1	265	100	109	16.2857
KKEEEEE::	chr18:9163147-9163386(+)$1	239	20	29	17.5102
22eeeee22	chr14:68536579-68536824(+)$1	245	141	150	18.7346
iiiiiiiii	chr7:27658662-27658906(-)$1	244	22	31	17.2040
GGGGGGGLL	chr7:116600914-116601161(+)$1	247	86	95	20.7755
JJJ?????I	chr15:44732157-44732416(+)$1	259	173	182	17.2040
C{HHHHHHH	chr5:80586041-80586292(-)$1	251	3	12	18.7346
ZZBB}DDDD	chr1:91423123-91423432(-)$1	309	277	286	17.3061
hhhhh]ccc	chr1:227764235-227764481(+)$1	246	218	227	16.4897
hhh[ggggg	chr7:7243659-7243909(+)$1	250	87	96	18.1224

#DB
)))))))))	chr1:20235671-20235937(+)$1	1	89	98	20.7755
..)))....	chr10:99909531-99909787(+)$1	1	197	206	17.3061
.......((	chr2:132380082-132380378(+)$1	1	207	216	14.2448
((.((..((	chr2:55262067-55262291(-)$1	1	25	34	14.8571
((((((((.	chr8:126212802-126213124(+)$1	1	120	129	14.3469
....(((((	chr1:212939978-212940225(-)$1	1	35	44	18.1224
.((((((((	chr10:76984083-76984373(+)$1	1	14	23	16.1836
..((.....	chr6:31376995-31377259(+)$1	1	168	177	17.1020
((((.....	chr17:29632159-29632448(+)$1	1	147	156	16.3877
(((((((..	chr3:72493413-72493687(-)$1	1	63	72	20.7755
((..(((..	chr16:10507881-10508128(+)$1	1	204	213	16.8979
.........	chr2:33197163-33197397(+)$1	1	16	25	16.6938
))))....)	chr21:11174049-11174285(+)$1	1	216	225	14.8571
(((((....	chr6:111754214-111754451(-)$1	1	17	26	16.2857
)...((((.	chr10:126764517-126764771(-)$1	1	14	23	14.3469
(((((((((	chr11:68268167-68268464(+)$1	1	107	116	16.8979
)))))....	chr4:151798859-151799098(-)$1	1	55	64	17.8163
.........	chr19:21228337-21228575(+)$1	1	11	20	14.6530
...)))...	chr8:100036760-100037007(+)$1	1	95	104	20.7755
((((.(((.	chr12:28436615-28436850(+)$1	1	19	28	14.8571
(((((..((	chr8:52778761-52779007(-)$1	1	19	28	15.0612
((((.((.(	chr7:107174750-107175036(-)$1	1	21	30	14.5510
.......((	chr2:183863058-183863289(-)$1	1	116	125	16.3877
...))))))	chr7:156496965-156497256(-)$1	1	162	171	17.2040
...((((..	chr16:24752805-24753045(+)$1	1	22	31	16.1836
))......)	chr1:174277781-174278023(+)$1	1	91	100	15.0612
)).)))..)	chr6:146220439-146220683(-)$1	1	159	168	15.4693
(((((.((.	chr7:91634466-91634789(+)$1	1	57	66	16.1836
((......)	chr12:132477382-132477654(+)$1	1	35	44	18.7346
.(((((((.	chr18:9229709-9229930(+)$1	1	17	26	17.8163
...))))).	chr12:69916202-69916463(+)$1	1	187	196	16.8979
((((((...	chr12:110722309-110722519(+)$1	1	53	62	15.4693
.))))))..	chr21:15879201-15879465(-)$1	1	69	78	15.4693
)........	chr5:126881484-126881804(+)$1	1	44	53	14.6530
........)	chr4:6956851-6957140(+)$1	1	161	170	15.9795
(...(..((	chr4:48403109-48403364(+)$1	1	1	10	18.7346
.((((....	chr11:102286360-102286611(-)$1	1	16	25	15.1632
)))((((((	chr14:54902615-54902850(-)$1	1	118	127	14.4489
((((((((.	chr7:91595443-91595690(+)$1	1	93	102	16.6938
.(((((((.	chr10:35639351-35639616(+)$1	1	100	109	16.2857
..(((((..	chr18:9163147-9163386(+)$1	1	20	29	17.5102
..)))))..	chr14:68536579-68536824(+)$1	1	141	150	18.7346
(((((((((	chr7:27658662-27658906(-)$1	1	22	31	17.2040
(((((((..	chr7:116600914-116601161(+)$1	1	86	95	20.7755
))).....)	chr15:44732157-44732416(+)$1	1	173	182	17.2040
(.(((((((	chr5:80586041-80586292(-)$1	1	3	12	18.7346
..)).))))	chr1:91423123-91423432(-)$1	1	277	286	17.3061
))))).)))	chr1:227764235-227764481(+)$1	1	218	227	16.4897
(((.(((((	chr7:7243659-7243909(+)$1	1	87	96	18.1224

#PSSM
u : 0.73	U : 0.20	g : 0.02	a : 0.02	A : 0.02	
u : 0.51	g : 0.16	U : 0.14	G : 0.08	a : 0.06	c : 0.04	
u : 0.77	U : 0.20	A : 0.02	
g : 0.67	G : 0.22	u : 0.08	a : 0.02	
g : 0.53	G : 0.20	u : 0.18	c : 0.04	U : 0.02	a : 0.02	
u : 0.59	U : 0.18	g : 0.10	c : 0.06	a : 0.02	G : 0.02	A : 0.02	
u : 0.75	U : 0.18	G : 0.04	g : 0.02	
u : 0.69	U : 0.18	g : 0.06	G : 0.04	a : 0.02	
u : 0.73	U : 0.22	g : 0.04	

#score	818.7142857142865
#seq	49
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_CDS_m1_run2.nuc.txt

#NT
UUUGUGUAUUUUU	chr4:120221408-120221636(-)$1	228	126	139	28.9999
GUUGUGUAUGUUU	chr6:122766070-122766312(-)$1	242	196	209	22.0000
UGUGUGUAUUUUG	chr20:31025023-31025331(+)$1	308	152	165	21.0000
UUUGUGUAUUUUU	chr4:120221390-120221606(-)$1	216	96	109	28.9999
UUUAUGCAUUUUU	chr6:166739519-166739756(-)$1	237	34	47	22.0000
CUUGUGUCUUAUU	chr3:149089373-149089621(-)$1	248	78	91	21.5000
AUUAUGUUUUUUU	chr14:39868454-39868833(-)$1	379	163	176	21.5000
UUUGUUUUUUCUU	chr4:57897000-57897294(+)$1	294	46	59	22.0000
UUUGAUUCUUUUU	chr1:186282897-186283214(-)$1	317	33	46	22.0000

#otherMatches

#Struct PSSM
HHHHHHH::::::	chr18:56998159-56998430(-)$1	271	48	61	26.0000
e!!bb####iiii	chr4:120221408-120221636(-)$1	228	126	139	28.9999
gggg]cccggggg	chr6:122766070-122766312(-)$1	242	196	209	22.0000
fffcccggggggg	chr20:31025023-31025331(+)$1	308	152	165	21.0000
e!!bb####iiii	chr4:120221390-120221606(-)$1	216	96	109	28.9999
ssssgggggggdd	chr6:166739519-166739756(-)$1	237	34	47	22.0000
f22a]ccc:::::	chr3:149089373-149089621(-)$1	248	78	91	21.5000
JJJJJJJJJJJJK	chr14:39868454-39868833(-)$1	379	163	176	21.5000
GGGGG::::cccm	chr4:57897000-57897294(+)$1	294	46	59	22.0000
dddd[========	chr1:186282897-186283214(-)$1	317	33	46	22.0000

#DB
(((((((......	chr18:56998159-56998430(-)$1	1	48	61	26.0000
(..((....((((	chr4:120221408-120221636(-)$1	1	126	139	28.9999
)))).))))))))	chr6:122766070-122766312(-)$1	1	196	209	22.0000
)))((((((((((	chr20:31025023-31025331(+)$1	1	152	165	21.0000
(..((....((((	chr4:120221390-120221606(-)$1	1	96	109	28.9999
....)))))))))	chr6:166739519-166739756(-)$1	1	34	47	22.0000
)..).))).....	chr3:149089373-149089621(-)$1	1	78	91	21.5000
((((((((((((.	chr14:39868454-39868833(-)$1	1	163	176	21.5000
(((((....(((.	chr4:57897000-57897294(+)$1	1	46	59	22.0000
((((.((((((((	chr1:186282897-186283214(-)$1	1	33	46	22.0000

#PSSM
U : 0.70	G : 0.10	C : 0.10	A : 0.10	
U : 0.89	G : 0.10	
U : 0.99	
G : 0.79	A : 0.20	
U : 0.89	A : 0.10	
G : 0.70	U : 0.30	
U : 0.89	C : 0.10	
A : 0.50	C : 0.30	U : 0.20	
U : 0.99	
U : 0.89	G : 0.10	
U : 0.79	A : 0.10	C : 0.10	
U : 0.99	
U : 0.89	G : 0.10	

#score	236.0
#seq	10
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_transcript_m2_run1.nuc.txt

#NT
GCUG	chr15:25312949-25313193(+)$1	244	26	30	11.9999
GCUG	chrY:2717483-2717749(+)$1	266	1	5	11.9999
GCUG	chr15:25310857-25311161(+)$1	304	66	70	11.9999
GCUG	chr14:39736596-39736844(+)$1	248	105	109	11.9999
gcug	chr14:39835635-39835890(+)$1	255	31	35	11.9999
GCUG	chr10:101996772-101996980(-)$1	208	105	109	11.9999
gcug	chr7:155461073-155461358(+)$1	285	15	19	11.9999
gcug	chr14:39835331-39835575(+)$1	244	1	5	11.9999
GCUG	chr9:139997772-139998003(+)$1	231	25	29	11.9999
GCUG	chr19:34883584-34883810(+)$1	226	18	22	11.9999
GCUG	chr9:139996946-139997212(+)$1	266	25	29	11.9999
GCUG	chr9:139997621-139997913(+)$1	292	99	103	11.9999
GCUG	chr19:34877571-34877817(+)$1	246	99	103	11.9999
gcug	chr21:46281543-46281796(-)$1	253	58	62	11.9999
GCUG	chr6:158455277-158455591(+)$1	314	3	7	11.9999
GCUG	chr20:34251800-34252054(-)$1	254	133	137	11.9999
gcug	chr6:45273934-45274188(-)$1	254	142	146	11.9999
gcug	chr5:1621229-1621487(-)$1	258	16	20	11.9999
gcug	chr14:39742466-39742683(+)$1	217	135	139	11.9999
GCUG	chrY:2715581-2715828(+)$1	247	104	108	11.9999
GCUG	chr15:25310734-25311013(+)$1	279	84	88	11.9999
gcug	chr14:89791404-89791698(-)$1	294	232	236	11.9999
GCUG	chr19:34873626-34873890(+)$1	264	82	86	11.9999
GCUG	chr9:94103331-94103602(-)$1	271	33	37	11.9999
gcug	chr6:160132627-160132873(-)$1	246	10	14	11.9999
GCUG	chr2:42425706-42425975(+)$1	269	128	132	11.9999
GCUG	chr19:34885257-34885520(+)$1	263	172	176	11.9999
GCUG	chr19:57351583-57351834(-)$1	251	20	24	11.9999
gcug	chr10:21993742-21993972(+)$1	230	86	90	11.9999
GCUG	chr15:25314270-25314519(+)$1	249	90	94	11.9999
GCUG	chr21:46285800-46286077(-)$1	277	44	48	11.9999
gcug	chr5:14404069-14404358(+)$1	289	166	170	11.9999
GCUG	chr12:132478857-132479167(+)$1	310	31	35	11.9999
GCUG	chrX:70761553-70761818(+)$1	265	7	11	11.9999
gcug	chr7:155507002-155507276(+)$1	274	19	23	11.9999
gcug	chr10:43314143-43314481(+)$1	338	62	66	11.9999
GCUG	chr1:94884472-94884728(+)$1	256	129	133	11.9999
GCUG	chrY:2716544-2716778(+)$1	234	162	166	11.9999
GCUG	chr19:34877170-34877454(+)$1	284	136	140	11.9999
GCUG	chr19:8542733-8542985(+)$1	252	238	242	11.9999
GCUG	chr19:8546156-8546440(+)$1	284	19	23	11.9999
GCUG	chr15:25229793-25230041(+)$1	248	127	131	11.9999
GCUG	chr11:65194817-65195034(+)$1	217	21	25	11.9999
GCUG	chr16:84111750-84112009(-)$1	259	14	18	11.9999
GCUG	chr21:46281371-46281684(-)$1	313	65	69	11.9999
GCUG	chr1:9317989-9318235(+)$1	246	204	208	11.9999
GCUG	chr13:113869015-113869256(+)$1	241	97	101	11.9999
GCUG	chr14:39736809-39737064(+)$1	255	43	47	11.9999
gcug	chr6:45279913-45280179(-)$1	266	40	44	11.9999
gcuG	chr5:1069903-1070163(-)$1	260	11	15	11.9999
gCUG	chr1:90318303-90318567(+)$1	264	134	138	11.9999
gcug	chr2:148719666-148719892(-)$1	226	29	33	11.9999
GCUG	chr18:74145778-74146073(-)$1	295	54	58	11.9999
gcug	chr5:1620754-1621039(-)$1	285	18	22	11.9999
gcug	chr17:44240188-44240434(-)$1	246	78	82	11.9999
GCUG	chr11:65194774-65194998(+)$1	224	64	68	11.9999
GCUG	chr7:158369047-158369331(-)$1	284	19	23	11.9999
GCUG	chr3:171763035-171763293(+)$1	258	105	109	11.9999
gcug	chr16:383968-384280(-)$1	312	2	6	11.9999
gcug	chr7:155506198-155506460(+)$1	262	63	67	11.9999
GCUG	chr16:3763938-3764205(-)$1	267	43	47	11.9999
GCUG	chr16:89381315-89381555(-)$1	240	58	62	11.9999
GCUG	chr16:89483789-89484037(-)$1	248	6	10	11.9999
GCUG	chr15:25308985-25309236(+)$1	251	158	162	11.9999
GCUG	chr15:25311744-25311997(+)$1	253	122	126	11.9999
GCUG	chr3:41241454-41241736(+)$1	282	162	166	11.9999
GCUG	chr9:86594303-86594557(-)$1	254	55	59	11.9999
gcug	chr5:286366-286624(+)$1	258	17	21	11.9999
gcug	chr7:155506576-155506848(+)$1	272	2	6	11.9999
GCUG	chr17:71654-71907(-)$1	253	37	41	11.9999
GCUG	chr14:23778303-23778565(+)$1	262	13	17	11.9999
GCUG	chr15:25312147-25312387(+)$1	240	58	62	11.9999
GCUG	chr7:157568548-157568895(-)$1	347	203	207	11.9999
GCUG	chr4:1236533-1236785(-)$1	252	1	5	11.9999

#otherMatches

#Struct PSSM
dddd	chr14:39835274-39835531(+)$1	257	58	62	11.9999
DDDD	chr15:25312949-25313193(+)$1	244	26	30	11.9999
IIII	chrY:2717483-2717749(+)$1	266	1	5	11.9999
{III	chr15:25310857-25311161(+)$1	304	66	70	11.9999
====	chr14:39736596-39736844(+)$1	248	105	109	11.9999
ccc[	chr14:39835635-39835890(+)$1	255	31	35	11.9999
]ggg	chr10:101996772-101996980(-)$1	208	105	109	11.9999
ccnn	chr7:155461073-155461358(+)$1	285	15	19	11.9999
:bb[	chr14:39835331-39835575(+)$1	244	1	5	11.9999
eeee	chr9:139997772-139998003(+)$1	231	25	29	11.9999
{FFF	chr19:34883584-34883810(+)$1	226	18	22	11.9999
CCCK	chr9:139996946-139997212(+)$1	266	25	29	11.9999
####	chr9:139997621-139997913(+)$1	292	99	103	11.9999
ccc]	chr19:34877571-34877817(+)$1	246	99	103	11.9999
CCC{	chr21:46281543-46281796(-)$1	253	58	62	11.9999
EEii	chr6:158455277-158455591(+)$1	314	3	7	11.9999
gggh	chr20:34251800-34252054(-)$1	254	133	137	11.9999
dddn	chr6:45273934-45274188(-)$1	254	142	146	11.9999
:ddd	chr5:1621229-1621487(-)$1	258	16	20	11.9999
g"""	chr14:39742466-39742683(+)$1	217	135	139	11.9999
eee[	chrY:2715581-2715828(+)$1	247	104	108	11.9999
sssf	chr15:25310734-25311013(+)$1	279	84	88	11.9999
iiii	chr14:89791404-89791698(-)$1	294	232	236	11.9999
#ccc	chr19:34873626-34873890(+)$1	264	82	86	11.9999
EEEE	chr9:94103331-94103602(-)$1	271	33	37	11.9999
{BBK	chr6:160132627-160132873(-)$1	246	10	14	11.9999
eeee	chr2:42425706-42425975(+)$1	269	128	132	11.9999
ffff	chr19:34885257-34885520(+)$1	263	172	176	11.9999
ffff	chr19:57351583-57351834(-)$1	251	20	24	11.9999
eeee	chr10:21993742-21993972(+)$1	230	86	90	11.9999
GGGG	chr15:25314270-25314519(+)$1	249	90	94	11.9999
ff[d	chr21:46285800-46286077(-)$1	277	44	48	11.9999
3fff	chr5:14404069-14404358(+)$1	289	166	170	11.9999
2bb]	chr12:132478857-132479167(+)$1	310	31	35	11.9999
DD{F	chrX:70761553-70761818(+)$1	265	7	11	11.9999
{BB{	chr7:155507002-155507276(+)$1	274	19	23	11.9999
ddd[	chr10:43314143-43314481(+)$1	338	62	66	11.9999
[amm	chr1:94884472-94884728(+)$1	256	129	133	11.9999
FF}E	chrY:2716544-2716778(+)$1	234	162	166	11.9999
pppp	chr19:34877170-34877454(+)$1	284	136	140	11.9999
G}A}	chr19:8542733-8542985(+)$1	252	238	242	11.9999
{HHH	chr19:8546156-8546440(+)$1	284	19	23	11.9999
GGGG	chr15:25229793-25230041(+)$1	248	127	131	11.9999
CC::	chr11:65194817-65195034(+)$1	217	21	25	11.9999
ddd+	chr16:84111750-84112009(-)$1	259	14	18	11.9999
ffff	chr21:46281371-46281684(-)$1	313	65	69	11.9999
bb:D	chr1:9317989-9318235(+)$1	246	204	208	11.9999
CC{B	chr13:113869015-113869256(+)$1	241	97	101	11.9999
d[cc	chr14:39736809-39737064(+)$1	255	43	47	11.9999
gggg	chr6:45279913-45280179(-)$1	266	40	44	11.9999
DDDD	chr5:1069903-1070163(-)$1	260	11	15	11.9999
rbb4	chr1:90318303-90318567(+)$1	264	134	138	11.9999
cbb!	chr2:148719666-148719892(-)$1	226	29	33	11.9999
dddd	chr18:74145778-74146073(-)$1	295	54	58	11.9999
eee$	chr5:1620754-1621039(-)$1	285	18	22	11.9999
eeee	chr17:44240188-44240434(-)$1	246	78	82	11.9999
eee]	chr11:65194774-65194998(+)$1	224	64	68	11.9999
bb[a	chr7:158369047-158369331(-)$1	284	19	23	11.9999
:iii	chr3:171763035-171763293(+)$1	258	105	109	11.9999
dddd	chr16:383968-384280(-)$1	312	2	6	11.9999
DCCC	chr7:155506198-155506460(+)$1	262	63	67	11.9999
gggg	chr16:3763938-3764205(-)$1	267	43	47	11.9999
DD{B	chr16:89381315-89381555(-)$1	240	58	62	11.9999
DDDD	chr16:89483789-89484037(-)$1	248	6	10	11.9999
pppp	chr15:25308985-25309236(+)$1	251	158	162	11.9999
gggg	chr15:25311744-25311997(+)$1	253	122	126	11.9999
]bbC	chr3:41241454-41241736(+)$1	282	162	166	11.9999
EEEE	chr9:86594303-86594557(-)$1	254	55	59	11.9999
eee$	chr5:286366-286624(+)$1	258	17	21	11.9999
====	chr7:155506576-155506848(+)$1	272	2	6	11.9999
eemm	chr17:71654-71907(-)$1	253	37	41	11.9999
ccc[	chr14:23778303-23778565(+)$1	262	13	17	11.9999
gga[	chr15:25312147-25312387(+)$1	240	58	62	11.9999
eeee	chr7:157568548-157568895(-)$1	347	203	207	11.9999
ffff	chr4:1236533-1236785(-)$1	252	1	5	11.9999

#DB
))))	chr14:39835274-39835531(+)$1	1	58	62	11.9999
((((	chr15:25312949-25313193(+)$1	1	26	30	11.9999
((((	chrY:2717483-2717749(+)$1	1	1	5	11.9999
.(((	chr15:25310857-25311161(+)$1	1	66	70	11.9999
))))	chr14:39736596-39736844(+)$1	1	105	109	11.9999
(((.	chr14:39835635-39835890(+)$1	1	31	35	11.9999
.)))	chr10:101996772-101996980(-)$1	1	105	109	11.9999
((..	chr7:155461073-155461358(+)$1	1	15	19	11.9999
.((.	chr14:39835331-39835575(+)$1	1	1	5	11.9999
((((	chr9:139997772-139998003(+)$1	1	25	29	11.9999
.(((	chr19:34883584-34883810(+)$1	1	18	22	11.9999
(((.	chr9:139996946-139997212(+)$1	1	25	29	11.9999
....	chr9:139997621-139997913(+)$1	1	99	103	11.9999
))).	chr19:34877571-34877817(+)$1	1	99	103	11.9999
(((.	chr21:46281543-46281796(-)$1	1	58	62	11.9999
((((	chr6:158455277-158455591(+)$1	1	3	7	11.9999
)))(	chr20:34251800-34252054(-)$1	1	133	137	11.9999
(((.	chr6:45273934-45274188(-)$1	1	142	146	11.9999
.(((	chr5:1621229-1621487(-)$1	1	16	20	11.9999
(...	chr14:39742466-39742683(+)$1	1	135	139	11.9999
(((.	chrY:2715581-2715828(+)$1	1	104	108	11.9999
...)	chr15:25310734-25311013(+)$1	1	84	88	11.9999
))))	chr14:89791404-89791698(-)$1	1	232	236	11.9999
.(((	chr19:34873626-34873890(+)$1	1	82	86	11.9999
((((	chr9:94103331-94103602(-)$1	1	33	37	11.9999
.((.	chr6:160132627-160132873(-)$1	1	10	14	11.9999
((((	chr2:42425706-42425975(+)$1	1	128	132	11.9999
((((	chr19:34885257-34885520(+)$1	1	172	176	11.9999
((((	chr19:57351583-57351834(-)$1	1	20	24	11.9999
((((	chr10:21993742-21993972(+)$1	1	86	90	11.9999
((((	chr15:25314270-25314519(+)$1	1	90	94	11.9999
((.(	chr21:46285800-46286077(-)$1	1	44	48	11.9999
.)))	chr5:14404069-14404358(+)$1	1	166	170	11.9999
.)).	chr12:132478857-132479167(+)$1	1	31	35	11.9999
((.(	chrX:70761553-70761818(+)$1	1	7	11	11.9999
.((.	chr7:155507002-155507276(+)$1	1	19	23	11.9999
(((.	chr10:43314143-43314481(+)$1	1	62	66	11.9999
.(..	chr1:94884472-94884728(+)$1	1	129	133	11.9999
)).)	chrY:2716544-2716778(+)$1	1	162	166	11.9999
....	chr19:34877170-34877454(+)$1	1	136	140	11.9999
).).	chr19:8542733-8542985(+)$1	1	238	242	11.9999
.(((	chr19:8546156-8546440(+)$1	1	19	23	11.9999
))))	chr15:25229793-25230041(+)$1	1	127	131	11.9999
((..	chr11:65194817-65195034(+)$1	1	21	25	11.9999
(((.	chr16:84111750-84112009(-)$1	1	14	18	11.9999
((((	chr21:46281371-46281684(-)$1	1	65	69	11.9999
)).)	chr1:9317989-9318235(+)$1	1	204	208	11.9999
((.(	chr13:113869015-113869256(+)$1	1	97	101	11.9999
(.((	chr14:39736809-39737064(+)$1	1	43	47	11.9999
))))	chr6:45279913-45280179(-)$1	1	40	44	11.9999
((((	chr5:1069903-1070163(-)$1	1	11	15	11.9999
.)).	chr1:90318303-90318567(+)$1	1	134	138	11.9999
(((.	chr2:148719666-148719892(-)$1	1	29	33	11.9999
((((	chr18:74145778-74146073(-)$1	1	54	58	11.9999
(((.	chr5:1620754-1621039(-)$1	1	18	22	11.9999
((((	chr17:44240188-44240434(-)$1	1	78	82	11.9999
))).	chr11:65194774-65194998(+)$1	1	64	68	11.9999
((.(	chr7:158369047-158369331(-)$1	1	19	23	11.9999
.(((	chr3:171763035-171763293(+)$1	1	105	109	11.9999
((((	chr16:383968-384280(-)$1	1	2	6	11.9999
((((	chr7:155506198-155506460(+)$1	1	63	67	11.9999
((((	chr16:3763938-3764205(-)$1	1	43	47	11.9999
((.(	chr16:89381315-89381555(-)$1	1	58	62	11.9999
((((	chr16:89483789-89484037(-)$1	1	6	10	11.9999
....	chr15:25308985-25309236(+)$1	1	158	162	11.9999
((((	chr15:25311744-25311997(+)$1	1	122	126	11.9999
.)))	chr3:41241454-41241736(+)$1	1	162	166	11.9999
((((	chr9:86594303-86594557(-)$1	1	55	59	11.9999
(((.	chr5:286366-286624(+)$1	1	17	21	11.9999
((((	chr7:155506576-155506848(+)$1	1	2	6	11.9999
((..	chr17:71654-71907(-)$1	1	37	41	11.9999
(((.	chr14:23778303-23778565(+)$1	1	13	17	11.9999
))(.	chr15:25312147-25312387(+)$1	1	58	62	11.9999
((((	chr7:157568548-157568895(-)$1	1	203	207	11.9999
((((	chr4:1236533-1236785(-)$1	1	1	5	11.9999

#PSSM
G : 0.67	g : 0.31	
C : 0.69	c : 0.30	
U : 0.69	u : 0.30	
G : 0.70	g : 0.29	

#score	899.9999999999998
#seq	75
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_transcript_m1_run1.nuc.txt

#NT
UCUGGGG	chr22:19163678-19163932(-)$1	254	105	112	12.4843
CCUGGAG	chr16:591354-591598(+)$1	244	39	46	13.2656
CCCGGGG	chr16:89976691-89976977(+)$1	286	144	151	13.0312
CCUGGGG	chr2:130894869-130895129(+)$1	260	248	255	17.0156
CCGGGGG	chr19:2270976-2271272(+)$1	296	92	99	13.0312
ccugggu	chr19:2198801-2199028(+)$1	227	70	77	13.7343
CCUGGGC	chr16:89758683-89758957(+)$1	274	7	14	13.6562
CCUGGGU	chr14:105935641-105935926(+)$1	285	28	35	13.7343
CCUGGGG	chr1:971406-971668(+)$1	262	5	12	17.0156
CCAGGGG	chr19:1408464-1408705(+)$1	241	117	124	13.1093
CCUGGUG	chr22:50011606-50011862(-)$1	256	82	89	12.7968
CCUGGAG	chr19:1410336-1410599(+)$1	263	134	141	13.2656
CCUGUGG	chr16:88546606-88546841(+)$1	235	47	54	12.7187
GCUGGGG	chr11:93454929-93455132(+)$1	203	115	122	12.4843
ccugggg	chr22:49971402-49971686(-)$1	284	224	231	17.0156
CCUGGGC	chr10:73581669-73581922(-)$1	253	53	60	13.6562
CCUGGGG	chr1:2163135-2163367(+)$1	232	105	112	17.0156
CCGGGGG	chr1:109823553-109823800(-)$1	247	4	11	13.0312
CCUGGGG	chr7:1520113-1520414(-)$1	301	14	21	17.0156
CCUCGGG	chr16:88973543-88973791(-)$1	248	139	146	12.1718
CCAGGGG	chr1:17357-17652(-)$1	295	148	155	13.1093
CUUGGGG	chr4:1804193-1804516(+)$1	323	102	109	12.6406
CCUGGGG	chr7:1491905-1492156(-)$1	251	119	126	17.0156
CCUGGGU	chr16:85677509-85677767(+)$1	258	91	98	13.7343
CCUGGGC	chr13:92000778-92001018(+)$1	240	47	54	13.6562
CCUGGGU	chr3:49049864-49050112(+)$1	248	34	41	13.7343
CCUGGGG	chr17:42398253-42398512(-)$1	259	123	130	17.0156
CCUGAGG	chr16:85660274-85660506(+)$1	232	45	52	12.8750
CCUGGGC	chr16:88568128-88568399(+)$1	271	174	181	13.6562
cgugggg	chr16:85672033-85672275(+)$1	242	141	148	12.4843
CCUGGGG	chrX:153627680-153627907(+)$1	227	169	176	17.0156
CCUGAGG	chr16:89018872-89019151(-)$1	279	65	72	12.8750
ccugggc	chr2:65794859-65795106(+)$1	247	40	47	13.6562
ccugggu	chr19:54677972-54678269(-)$1	297	3	10	13.7343
CCUGGGC	chr19:3697808-3698051(-)$1	243	111	118	13.6562
CCCGGGG	chr16:1796443-1796701(+)$1	258	87	94	13.0312
CCUGGGU	chr16:88567826-88568070(+)$1	244	211	218	13.7343
CCUGGGG	chr21:45734707-45734965(+)$1	258	75	82	17.0156
CCCGGGG	chr16:88963146-88963404(-)$1	258	153	160	13.0312
CCUGGAG	chr16:85651896-85652160(+)$1	264	112	119	13.2656
CCUGGGG	chr19:49994372-49994578(+)$1	206	41	48	17.0156
CCUGCGG	chr13:92000894-92001117(+)$1	223	141	148	12.6406
CCGGGGG	chr19:1271400-1271667(+)$1	267	9	16	13.0312
CCUGAGG	chr1:1278982-1279237(-)$1	255	19	26	12.8750
CCUGGAG	chr19:40964371-40964640(-)$1	269	130	137	13.2656
CAUGGGG	chr16:88562242-88562509(+)$1	267	40	47	12.4843
CCUGGAG	chr9:140073904-140074168(-)$1	264	133	140	13.2656
CCUGGGA	chr2:97506126-97506412(-)$1	286	86	93	13.3437
CCUGGGG	chr22:50010852-50011110(-)$1	258	239	246	17.0156
CCUGGGG	chr22:50016769-50017019(-)$1	250	135	142	17.0156
CCAGGGG	chr19:48259081-48259289(+)$1	208	65	72	13.1093
CCUGGCG	chr20:62513898-62514171(+)$1	273	38	45	12.7968
CCAGGGG	chr22:19955903-19956147(+)$1	244	37	44	13.1093
CUUGGGG	chr11:95521566-95521861(-)$1	295	255	262	12.6406
CCUGGAG	chr1:35900548-35900842(-)$1	294	41	48	13.2656
GCUGGGG	chr22:21983421-21983648(-)$1	227	99	106	12.4843
CCUGAGG	chr11:811694-811915(+)$1	221	203	210	12.8750
UCUGGGG	chr6:4953981-4954245(+)$1	264	241	248	12.4843
CCUGGAG	chr7:1477979-1478205(-)$1	226	33	40	13.2656
CCUGGGG	chr9:139559635-139559913(+)$1	278	231	238	17.0156
CCUGGGA	chr9:139563113-139563346(+)$1	233	100	107	13.3437
CUUGGGG	chr1:40032972-40033191(-)$1	219	113	120	12.6406
CCUGGGU	chr7:1482327-1482555(-)$1	228	63	70	13.7343

#otherMatches

#Struct PSSM
:GGGGGG	chr1:1690771-1691030(-)$1	259	37	44	12.7187
>>ggggg	chr22:19163678-19163932(-)$1	254	105	112	12.4843
ccc[a[i	chr16:591354-591598(+)$1	244	39	46	13.2656
ddddddd	chr16:89976691-89976977(+)$1	286	144	151	13.0312
IIIIIYY	chr2:130894869-130895129(+)$1	260	248	255	17.0156
gggggg[	chr19:2270976-2271272(+)$1	296	92	99	13.0312
fffff##	chr19:2198801-2199028(+)$1	227	70	77	13.7343
FF:gggg	chr16:89758683-89758957(+)$1	274	7	14	13.6562
d[dddd[	chr14:105935641-105935926(+)$1	285	28	35	13.7343
GGGGGLL	chr1:971406-971668(+)$1	262	5	12	17.0156
fflllff	chr19:1408464-1408705(+)$1	241	117	124	13.1093
fffff]f	chr22:50011606-50011862(-)$1	256	82	89	12.7968
eeeee[d	chr19:1410336-1410599(+)$1	263	134	141	13.2656
FFF{AKK	chr16:88546606-88546841(+)$1	235	47	54	12.7187
nnnnnee	chr11:93454929-93455132(+)$1	203	115	122	12.4843
ddllldd	chr22:49971402-49971686(-)$1	284	224	231	17.0156
MMMCCC{	chr10:73581669-73581922(-)$1	253	53	60	13.6562
333bb]b	chr1:2163135-2163367(+)$1	232	105	112	17.0156
ffffppp	chr1:109823553-109823800(-)$1	247	4	11	13.0312
IIIIIII	chr7:1520113-1520414(-)$1	301	14	21	17.0156
bffffff	chr16:88973543-88973791(-)$1	248	139	146	12.1718
cc::eee	chr1:17357-17652(-)$1	295	148	155	13.1093
fff22dd	chr4:1804193-1804516(+)$1	323	102	109	12.6406
eeeccce	chr7:1491905-1492156(-)$1	251	119	126	17.0156
cc333gg	chr16:85677509-85677767(+)$1	258	91	98	13.7343
b!!dddd	chr13:92000778-92001018(+)$1	240	47	54	13.6562
hhhhhhh	chr3:49049864-49050112(+)$1	248	34	41	13.7343
ddd"""c	chr17:42398253-42398512(-)$1	259	123	130	17.0156
fflllff	chr16:85660274-85660506(+)$1	232	45	52	12.8750
Hgggggg	chr16:88568128-88568399(+)$1	271	174	181	13.6562
siiiiii	chr16:85672033-85672275(+)$1	242	141	148	12.4843
66ddddb	chrX:153627680-153627907(+)$1	227	169	176	17.0156
ccc!!dd	chr16:89018872-89019151(-)$1	279	65	72	12.8750
FFFFFF{	chr2:65794859-65795106(+)$1	247	40	47	13.6562
ddd[bb[	chr19:54677972-54678269(-)$1	297	3	10	13.7343
dd::ccc	chr19:3697808-3698051(-)$1	243	111	118	13.6562
]hhhhhh	chr16:1796443-1796701(+)$1	258	87	94	13.0312
eeee]a]	chr16:88567826-88568070(+)$1	244	211	218	13.7343
::iiiii	chr21:45734707-45734965(+)$1	258	75	82	17.0156
eeeee]e	chr16:88963146-88963404(-)$1	258	153	160	13.0312
ccc:EEE	chr16:85651896-85652160(+)$1	264	112	119	13.2656
##ggggg	chr19:49994372-49994578(+)$1	206	41	48	17.0156
fffff]c	chr13:92000894-92001117(+)$1	223	141	148	12.6406
ccggggg	chr19:1271400-1271667(+)$1	267	9	16	13.0312
qqqcccB	chr1:1278982-1279237(-)$1	255	19	26	12.8750
ldddd]a	chr19:40964371-40964640(-)$1	269	130	137	13.2656
KKEEEEE	chr16:88562242-88562509(+)$1	267	40	47	12.4843
CEEEEE{	chr9:140073904-140074168(-)$1	264	133	140	13.2656
eeeeddd	chr2:97506126-97506412(-)$1	286	86	93	13.3437
}DDDD}B	chr22:50010852-50011110(-)$1	258	239	246	17.0156
:::eeee	chr22:50016769-50017019(-)$1	250	135	142	17.0156
:::::hh	chr19:48259081-48259289(+)$1	208	65	72	13.1093
6666bb]	chr20:62513898-62514171(+)$1	273	38	45	12.7968
hlllhhh	chr22:19955903-19956147(+)$1	244	37	44	13.1093
hhhhEEE	chr11:95521566-95521861(-)$1	295	255	262	12.6406
hhh"""h	chr1:35900548-35900842(-)$1	294	41	48	13.2656
"""cccf	chr22:21983421-21983648(-)$1	227	99	106	12.4843
GGGGGGG	chr11:811694-811915(+)$1	221	203	210	12.8750
:eeeeeo	chr6:4953981-4954245(+)$1	264	241	248	12.4843
FFLLLEE	chr7:1477979-1478205(-)$1	226	33	40	13.2656
ggggggg	chr9:139559635-139559913(+)$1	278	231	238	17.0156
AEEEEE:	chr9:139563113-139563346(+)$1	233	100	107	13.3437
ppddddh	chr1:40032972-40033191(-)$1	219	113	120	12.6406
eeee333	chr7:1482327-1482555(-)$1	228	63	70	13.7343

#DB
.((((((	chr1:1690771-1691030(-)$1	1	37	44	12.7187
..)))))	chr22:19163678-19163932(-)$1	1	105	112	12.4843
(((.(.(	chr16:591354-591598(+)$1	1	39	46	13.2656
))))(((	chr16:89976691-89976977(+)$1	1	144	151	13.0312
)))))..	chr2:130894869-130895129(+)$1	1	248	255	17.0156
((((((.	chr19:2270976-2271272(+)$1	1	92	99	13.0312
(((((..	chr19:2198801-2199028(+)$1	1	70	77	13.7343
((.((((	chr16:89758683-89758957(+)$1	1	7	14	13.6562
(.((((.	chr14:105935641-105935926(+)$1	1	28	35	13.7343
(((((..	chr1:971406-971668(+)$1	1	5	12	17.0156
((...))	chr19:1408464-1408705(+)$1	1	117	124	13.1093
))))).)	chr22:50011606-50011862(-)$1	1	82	89	12.7968
(((((.(	chr19:1410336-1410599(+)$1	1	134	141	13.2656
(((.(..	chr16:88546606-88546841(+)$1	1	47	54	12.7187
.....))	chr11:93454929-93455132(+)$1	1	115	122	12.4843
((...))	chr22:49971402-49971686(-)$1	1	224	231	17.0156
...(((.	chr10:73581669-73581922(-)$1	1	53	60	13.6562
...)).)	chr1:2163135-2163367(+)$1	1	105	112	17.0156
((((...	chr1:109823553-109823800(-)$1	1	4	11	13.0312
(((((((	chr7:1520113-1520414(-)$1	1	14	21	17.0156
(((((((	chr16:88973543-88973791(-)$1	1	139	146	12.1718
))..(((	chr1:17357-17652(-)$1	1	148	155	13.1093
)))..))	chr4:1804193-1804516(+)$1	1	102	109	12.6406
)))((((	chr7:1491905-1492156(-)$1	1	119	126	17.0156
))...))	chr16:85677509-85677767(+)$1	1	91	98	13.7343
(..((((	chr13:92000778-92001018(+)$1	1	47	54	13.6562
(((((((	chr3:49049864-49050112(+)$1	1	34	41	13.7343
(((...(	chr17:42398253-42398512(-)$1	1	123	130	17.0156
((...))	chr16:85660274-85660506(+)$1	1	45	52	12.8750
)((((((	chr16:88568128-88568399(+)$1	1	174	181	13.6562
.))))))	chr16:85672033-85672275(+)$1	1	141	148	12.4843
..))))(	chrX:153627680-153627907(+)$1	1	169	176	17.0156
(((..((	chr16:89018872-89019151(-)$1	1	65	72	12.8750
((((((.	chr2:65794859-65795106(+)$1	1	40	47	13.6562
(((.((.	chr19:54677972-54678269(-)$1	1	3	10	13.7343
))..(((	chr19:3697808-3698051(-)$1	1	111	118	13.6562
.))))))	chr16:1796443-1796701(+)$1	1	87	94	13.0312
)))).).	chr16:88567826-88568070(+)$1	1	211	218	13.7343
..(((((	chr21:45734707-45734965(+)$1	1	75	82	17.0156
))))).)	chr16:88963146-88963404(-)$1	1	153	160	13.0312
))).(((	chr16:85651896-85652160(+)$1	1	112	119	13.2656
..(((((	chr19:49994372-49994578(+)$1	1	41	48	17.0156
))))).)	chr13:92000894-92001117(+)$1	1	141	148	12.6406
(((((((	chr19:1271400-1271667(+)$1	1	9	16	13.0312
...)))(	chr1:1278982-1279237(-)$1	1	19	26	12.8750
.)))).)	chr19:40964371-40964640(-)$1	1	130	137	13.2656
..(((((	chr16:88562242-88562509(+)$1	1	40	47	12.4843
((((((.	chr9:140073904-140074168(-)$1	1	133	140	13.2656
)))))))	chr2:97506126-97506412(-)$1	1	86	93	13.3437
.)))).)	chr22:50010852-50011110(-)$1	1	239	246	17.0156
...((((	chr22:50016769-50017019(-)$1	1	135	142	17.0156
.....((	chr19:48259081-48259289(+)$1	1	65	72	13.1093
....)).	chr20:62513898-62514171(+)$1	1	38	45	12.7968
(...)))	chr22:19955903-19956147(+)$1	1	37	44	13.1093
)))))))	chr11:95521566-95521861(-)$1	1	255	262	12.6406
(((...(	chr1:35900548-35900842(-)$1	1	41	48	13.2656
...((((	chr22:21983421-21983648(-)$1	1	99	106	12.4843
)))))))	chr11:811694-811915(+)$1	1	203	210	12.8750
.(((((.	chr6:4953981-4954245(+)$1	1	241	248	12.4843
((...((	chr7:1477979-1478205(-)$1	1	33	40	13.2656
)))))))	chr9:139559635-139559913(+)$1	1	231	238	17.0156
((((((.	chr9:139563113-139563346(+)$1	1	100	107	13.3437
..)))))	chr1:40032972-40033191(-)$1	1	113	120	12.6406
))))...	chr7:1482327-1482555(-)$1	1	63	70	13.7343

#PSSM
C : 0.85	c : 0.07	U : 0.03	G : 0.03	
C : 0.85	c : 0.06	U : 0.04	g : 0.01	A : 0.01	
U : 0.76	u : 0.07	A : 0.06	C : 0.04	G : 0.04	
G : 0.90	g : 0.07	C : 0.01	
G : 0.81	g : 0.07	A : 0.06	U : 0.03	C : 0.01	
G : 0.78	A : 0.10	g : 0.07	U : 0.01	C : 0.01	
G : 0.73	C : 0.07	U : 0.07	u : 0.03	g : 0.03	A : 0.03	c : 0.01	

#score	889.625
#seq	64
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_UTR_m2_run2.nuc.txt

#NT
GCCCGGGGA	chr6:31802967-31803203(+)$1	236	54	63	12.5319
GCAAGGAGG	chr17:46052495-46052763(+)$1	268	128	137	12.6382
GCCAGGAGC	chr1:44003767-44004005(+)$1	238	202	211	12.9574
CCCAGGUGG	chr11:75111333-75111571(+)$1	238	149	158	12.8510
GCCAGGAGA	chr17:64224097-64224346(-)$1	249	93	102	12.9574
CCCAGGUGG	chr11:75111431-75111671(+)$1	240	51	60	12.8510
GCCAGCAGG	chr9:117008045-117008260(+)$1	215	19	28	13.5957
CCCAGGCGG	chr16:2802588-2802878(+)$1	290	69	78	12.7446
GCCAGGGGG	chr9:116997787-116998016(+)$1	229	15	24	19.0212
GCCAGCCGG	chr16:2164068-2164313(-)$1	245	38	47	13.3829
GCCAGGGCU	chr17:79804207-79804428(-)$1	221	142	151	12.5319
GCACGGGGG	chr8:11705103-11705347(-)$1	244	76	85	12.2127
GCCAGGUGG	chr9:117015063-117015311(+)$1	248	109	118	16.5744
GCCAGGGCU	chr6:167369764-167370029(-)$1	265	132	141	12.5319
GCCGGGGAG	chr8:57906013-57906363(-)$1	350	92	101	12.5319
GCCAGGGUC	chr21:46914714-46914929(+)$1	215	18	27	12.7446
gccggggug	chr1:11986199-11986445(-)$1	246	36	45	13.2765
GCCAGGGGU	chr9:116999166-116999409(+)$1	243	98	107	15.7234
GCCCGGGGG	chr11:67810657-67810935(+)$1	278	110	119	16.2553
GCCAGCGUG	chr16:89839650-89839893(-)$1	243	203	212	13.3829
GCCAGGGGU	chr9:96009765-96010121(+)$1	356	206	215	15.7234
GCCAGGUGG	chr9:117027601-117027841(+)$1	240	211	220	16.5744
GCCCGGGGG	chr20:60889758-60889985(-)$1	227	110	119	16.2553
GCCAGGGUG	chr17:27047493-27047697(+)$1	204	146	155	16.4680
GCCCGGGAG	chr2:220435942-220436229(-)$1	287	140	149	12.9574
CCCAGGUGG	chr9:117062261-117062503(+)$1	242	20	29	12.8510
GCCAGGGGU	chr9:116999160-116999366(+)$1	206	104	113	15.7234
gcccgcggg	chr2:220408156-220408422(-)$1	266	49	58	13.1702
GCCAGGCGG	chr7:2671530-2671798(+)$1	268	162	171	16.4680
GCCAGCGGG	chr6:24357741-24358074(-)$1	333	83	92	15.9361
GCCAGCGUG	chr16:89839605-89839850(-)$1	245	160	169	13.3829
GCACGGGGG	chr8:11705147-11705433(-)$1	286	162	171	12.2127
GCCAGGAUG	chr3:50095247-50095527(+)$1	280	168	177	14.1276
GCCAGGGGG	chr9:116997779-116997987(+)$1	208	23	32	19.0212
gcaaggcgg	chr2:11484516-11484760(-)$1	244	48	57	12.4255
CCCAGGGGG	chr6:43109569-43109847(+)$1	278	174	183	15.2978
CCCAGGGUG	chr3:184103786-184104045(+)$1	259	48	57	12.7446
GCCUGGGGU	chr21:46915235-46915447(+)$1	212	177	186	12.2127
GCCCGCGGG	chr22:41697625-41697877(+)$1	252	124	133	13.1702
GCCGGGAGG	chr16:3767355-3767612(-)$1	257	183	192	13.4893
GCCAGGGUG	chr17:27047497-27047725(+)$1	228	142	151	16.4680
GCCAGGCUG	chr17:80193757-80193980(+)$1	223	41	50	13.9148
gccGGGAGG	chr22:33197740-33197992(+)$1	252	27	36	13.4893
GCCAGGGCG	chr20:17608143-17608393(-)$1	250	152	161	15.8297
GCCAGCUGG	chr9:116823733-116823969(-)$1	236	104	113	13.4893
GCCAGCGGG	chr17:76969076-76969292(-)$1	216	57	66	15.9361

#otherMatches

#Struct PSSM
ccc[dddd[	chr4:166300240-166300549(+)$1	309	141	150	14.6595
ccc[dddd^	chr6:31802967-31803203(+)$1	236	54	63	12.5319
}BB:IIIII	chr17:46052495-46052763(+)$1	268	128	137	12.6382
dEEEEE}BB	chr1:44003767-44004005(+)$1	238	202	211	12.9574
[eeeee!!b	chr11:75111333-75111571(+)$1	238	149	158	12.8510
EKKGGGGGG	chr17:64224097-64224346(-)$1	249	93	102	12.9574
[eeeee!!b	chr11:75111431-75111671(+)$1	240	51	60	12.8510
eeemmmmee	chr9:117008045-117008260(+)$1	215	19	28	13.5957
bb!!bb[cc	chr16:2802588-2802878(+)$1	290	69	78	12.7446
IIIIIIIII	chr9:116997787-116998016(+)$1	229	15	24	19.0212
eeeeCCC{E	chr16:2164068-2164313(-)$1	245	38	47	13.3829
f!!cccmmm	chr17:79804207-79804428(-)$1	221	142	151	12.5319
eeee!!ccc	chr8:11705103-11705347(-)$1	244	76	85	12.2127
#eeeee[cc	chr9:117015063-117015311(+)$1	248	109	118	16.5744
mbb]eeeee	chr6:167369764-167370029(-)$1	265	132	141	12.5319
{BBGGGGGG	chr8:57906013-57906363(-)$1	350	92	101	12.5319
EEE{CCC{D	chr21:46914714-46914929(+)$1	215	18	27	12.7446
EEE{BB{BB	chr1:11986199-11986445(-)$1	246	36	45	13.2765
hhh!!bbmm	chr9:116999166-116999409(+)$1	243	98	107	15.7234
dddd:HHHH	chr11:67810657-67810935(+)$1	278	110	119	16.2553
ddddooooo	chr16:89839650-89839893(-)$1	243	203	212	13.3829
bb[ffffff	chr9:96009765-96010121(+)$1	356	206	215	15.7234
dddd]dddd	chr9:117027601-117027841(+)$1	240	211	220	16.5744
:ccc!!fff	chr20:60889758-60889985(-)$1	227	110	119	16.2553
eeeeeccce	chr17:27047493-27047697(+)$1	204	146	155	16.4680
fffffcccm	chr2:220435942-220436229(-)$1	287	140	149	12.9574
b####dddd	chr9:117062261-117062503(+)$1	242	20	29	12.8510
hhh!!bbmm	chr9:116999160-116999366(+)$1	206	104	113	15.7234
pppppppgg	chr2:220408156-220408422(-)$1	266	49	58	13.1702
fff!!ccce	chr7:2671530-2671798(+)$1	268	162	171	16.4680
HHH:FFFFF	chr6:24357741-24358074(-)$1	333	83	92	15.9361
ddddooooo	chr16:89839605-89839850(-)$1	245	160	169	13.3829
eeee!!ccc	chr8:11705147-11705433(-)$1	286	162	171	12.2127
ccc!!ffff	chr3:50095247-50095527(+)$1	280	168	177	14.1276
EEEEggggg	chr9:116997779-116997987(+)$1	208	23	32	19.0212
ee!!ccc[d	chr2:11484516-11484760(-)$1	244	48	57	12.4255
G}GGGGGGG	chr6:43109569-43109847(+)$1	278	174	183	15.2978
DDDKKDDDD	chr3:184103786-184104045(+)$1	259	48	57	12.7446
44bb]hhhh	chr21:46915235-46915447(+)$1	212	177	186	12.2127
[iiiiiiii	chr22:41697625-41697877(+)$1	252	124	133	13.1702
gggggBBBB	chr16:3767355-3767612(-)$1	257	183	192	13.4893
eeeeeccce	chr17:27047497-27047725(+)$1	228	142	151	16.4680
bbhhhhhhh	chr17:80193757-80193980(+)$1	223	41	50	13.9148
ffffff!!b	chr22:33197740-33197992(+)$1	252	27	36	13.4893
hhhhggggg	chr20:17608143-17608393(-)$1	250	152	161	15.8297
EEE{FFFFF	chr9:116823733-116823969(-)$1	236	104	113	13.4893
eeennnnne	chr17:76969076-76969292(-)$1	216	57	66	15.9361

#DB
(((.((((.	chr4:166300240-166300549(+)$1	1	141	150	14.6595
(((.((((.	chr6:31802967-31803203(+)$1	1	54	63	12.5319
.)).(((((	chr17:46052495-46052763(+)$1	1	128	137	12.6382
)))))).))	chr1:44003767-44004005(+)$1	1	202	211	12.9574
.(((((..(	chr11:75111333-75111571(+)$1	1	149	158	12.8510
(..((((((	chr17:64224097-64224346(-)$1	1	93	102	12.9574
.(((((..(	chr11:75111431-75111671(+)$1	1	51	60	12.8510
(((....))	chr9:117008045-117008260(+)$1	1	19	28	13.5957
((..((.((	chr16:2802588-2802878(+)$1	1	69	78	12.7446
(((((((((	chr9:116997787-116998016(+)$1	1	15	24	19.0212
))))(((.(	chr16:2164068-2164313(-)$1	1	38	47	13.3829
(..(((...	chr17:79804207-79804428(-)$1	1	142	151	12.5319
((((..(((	chr8:11705103-11705347(-)$1	1	76	85	12.2127
.(((((.((	chr9:117015063-117015311(+)$1	1	109	118	16.5744
.)).)))))	chr6:167369764-167370029(-)$1	1	132	141	12.5319
.((((((((	chr8:57906013-57906363(-)$1	1	92	101	12.5319
(((.(((.(	chr21:46914714-46914929(+)$1	1	18	27	12.7446
(((.((.((	chr1:11986199-11986445(-)$1	1	36	45	13.2765
(((..((..	chr9:116999166-116999409(+)$1	1	98	107	15.7234
)))).((((	chr11:67810657-67810935(+)$1	1	110	119	16.2553
((((.....	chr16:89839650-89839893(-)$1	1	203	212	13.3829
((.((((((	chr9:96009765-96010121(+)$1	1	206	215	15.7234
)))).))))	chr9:117027601-117027841(+)$1	1	211	220	16.5744
.(((..(((	chr20:60889758-60889985(-)$1	1	110	119	16.2553
))))))))(	chr17:27047493-27047697(+)$1	1	146	155	16.4680
((((((((.	chr2:220435942-220436229(-)$1	1	140	149	12.9574
(....((((	chr9:117062261-117062503(+)$1	1	20	29	12.8510
(((..((..	chr9:116999160-116999366(+)$1	1	104	113	15.7234
.......))	chr2:220408156-220408422(-)$1	1	49	58	13.1702
(((..((((	chr7:2671530-2671798(+)$1	1	162	171	16.4680
))).(((((	chr6:24357741-24358074(-)$1	1	83	92	15.9361
((((.....	chr16:89839605-89839850(-)$1	1	160	169	13.3829
((((..(((	chr8:11705147-11705433(-)$1	1	162	171	12.2127
(((..((((	chr3:50095247-50095527(+)$1	1	168	177	14.1276
(((((((((	chr9:116997779-116997987(+)$1	1	23	32	19.0212
((..(((.(	chr2:11484516-11484760(-)$1	1	48	57	12.4255
).)))))))	chr6:43109569-43109847(+)$1	1	174	183	15.2978
(((..((((	chr3:184103786-184104045(+)$1	1	48	57	12.7446
..)).))))	chr21:46915235-46915447(+)$1	1	177	186	12.2127
.((((((((	chr22:41697625-41697877(+)$1	1	124	133	13.1702
)))))))))	chr16:3767355-3767612(-)$1	1	183	192	13.4893
))))))))(	chr17:27047497-27047725(+)$1	1	142	151	16.4680
(((((((((	chr17:80193757-80193980(+)$1	1	41	50	13.9148
((((((..(	chr22:33197740-33197992(+)$1	1	27	36	13.4893
))))(((((	chr20:17608143-17608393(-)$1	1	152	161	15.8297
(((.(((((	chr9:116823733-116823969(-)$1	1	104	113	13.4893
(((.....)	chr17:76969076-76969292(-)$1	1	57	66	15.9361

#PSSM
G : 0.78	C : 0.12	g : 0.08	
C : 0.91	c : 0.08	
C : 0.82	A : 0.06	c : 0.06	G : 0.02	a : 0.02	
A : 0.70	C : 0.14	G : 0.06	g : 0.02	c : 0.02	a : 0.02	U : 0.02	
G : 0.93	g : 0.06	
G : 0.76	C : 0.17	g : 0.04	c : 0.02	
G : 0.57	A : 0.14	U : 0.12	C : 0.08	g : 0.04	c : 0.02	
G : 0.65	U : 0.17	C : 0.06	A : 0.04	g : 0.04	u : 0.02	
G : 0.72	U : 0.12	g : 0.06	A : 0.04	C : 0.04	

#score	667.2978723404259
#seq	47
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_UTR_m3_run1.nuc.txt

#NT
GGCU	chr16:1496199-1496462(-)$1	263	125	129	11.9999
ggcu	chr3:185542652-185542943(-)$1	291	55	59	11.9999
GGCU	chr18:51750680-51751072(-)$1	392	97	101	11.9999
GGCU	chr12:7037358-7037615(+)$1	257	241	245	11.9999
GGCU	chr3:197024742-197025010(-)$1	268	223	227	11.9999
ggcu	chr19:18653920-18654217(-)$1	297	5	9	11.9999
GGCU	chr17:17716173-17716432(-)$1	259	108	112	11.9999
GGCU	chr19:974748-975057(+)$1	309	140	144	11.9999
GGCU	chrX:114795483-114795895(+)$1	412	5	9	11.9999
GGCU	chr2:48010995-48011265(+)$1	270	159	163	11.9999
GGCU	chr7:77045511-77045795(-)$1	284	159	163	11.9999
GGCU	chr20:36155942-36156194(-)$1	252	154	158	11.9999
GGCU	chr7:140396905-140397180(+)$1	275	18	22	11.9999
GGCU	chr9:139743389-139743618(+)$1	229	136	140	11.9999
GGCU	chr22:20862357-20862677(+)$1	320	12	16	11.9999
GGCU	chr8:144678786-144679006(-)$1	220	86	90	11.9999
ggcu	chr8:145691408-145691670(+)$1	262	4	8	11.9999
GGCU	chr2:55844479-55844757(-)$1	278	138	142	11.9999
GGCU	chr3:184043166-184043393(+)$1	227	163	167	11.9999
GGCU	chr21:45736285-45736500(+)$1	215	3	7	11.9999
GGCU	chr17:74099642-74099881(-)$1	239	187	191	11.9999
GGCU	chr17:77914440-77914732(-)$1	292	54	58	11.9999
GGCU	chr17:40715934-40716215(+)$1	281	30	34	11.9999
GGCU	chr17:38077886-38078116(-)$1	230	137	141	11.9999
GGCU	chr14:21945278-21945558(+)$1	280	187	191	11.9999
GGCU	chr17:1665360-1665646(+)$1	286	1	5	11.9999
GGCU	chr6:33171704-33171948(+)$1	244	34	38	11.9999
GGCU	chr15:40758357-40758623(+)$1	266	12	16	11.9999
GGCU	chr17:7155843-7156136(+)$1	293	120	124	11.9999
GGCU	chr20:42142995-42143292(+)$1	297	2	6	11.9999
GGCU	chr3:47459574-47459822(-)$1	248	72	76	11.9999
GGCU	chr11:64879339-64879593(+)$1	254	233	237	11.9999
ggcu	chr9:130331091-130331382(-)$1	291	39	43	11.9999
GGCU	chr10:129924479-129924746(-)$1	267	52	56	11.9999
GGCU	chr3:184100059-184100308(+)$1	249	157	161	11.9999
GGCU	chr17:48796936-48797203(+)$1	267	35	39	11.9999
GGCU	chr7:150777523-150777810(-)$1	287	62	66	11.9999
GGCU	chr17:42276999-42277250(-)$1	251	55	59	11.9999
GGCU	chr17:7082325-7082533(-)$1	208	51	55	11.9999
GGCU	chr16:30205874-30206163(+)$1	289	35	39	11.9999
GGCU	chr9:127998517-127998773(-)$1	256	41	45	11.9999
GGCU	chr14:32546403-32546612(+)$1	209	10	14	11.9999
GGCU	chr1:33283101-33283386(+)$1	285	87	91	11.9999
GGCU	chr9:104161170-104161393(+)$1	223	32	36	11.9999
GGCU	chr20:32441264-32441543(+)$1	279	86	90	11.9999
GGCU	chr3:185826332-185826633(-)$1	301	109	113	11.9999
GGCU	chr11:65479630-65479994(+)$1	364	20	24	11.9999
GGCU	chr3:13521756-13522020(+)$1	264	14	18	11.9999
GGCU	chr3:138553552-138553810(-)$1	258	3	7	11.9999
GGCU	chr9:139904716-139904992(-)$1	276	52	56	11.9999
GGCU	chr19:42788617-42788879(+)$1	262	169	173	11.9999
GGCU	chr1:36788046-36788318(+)$1	272	36	40	11.9999
GGCU	chr2:208576270-208576548(+)$1	278	25	29	11.9999
GGCU	chr6:3118972-3119305(+)$1	333	7	11	11.9999
GGCU	chr16:447986-448211(+)$1	225	30	34	11.9999
ggcu	chr11:65315959-65316269(-)$1	310	67	71	11.9999
GGCU	chr12:103310789-103311069(-)$1	280	188	192	11.9999
GGCU	chr19:5623042-5623305(+)$1	263	224	228	11.9999
GGCU	chr7:102004290-102004597(+)$1	307	47	51	11.9999
GGCU	chr16:30959659-30959943(+)$1	284	28	32	11.9999
GGCU	chr19:49606301-49606554(+)$1	253	94	98	11.9999
GGCU	chr6:44274782-44275054(-)$1	272	0	4	11.9999
GGCU	chr2:26569020-26569454(+)$1	434	82	86	11.9999
GGCU	chr2:95824943-95825224(-)$1	281	43	47	11.9999
ggcu	chr5:95297252-95297562(-)$1	310	54	58	11.9999
GGCU	chr14:24776730-24777068(+)$1	338	30	34	11.9999
GGCU	chr21:45284974-45285260(+)$1	286	244	248	11.9999
GGCU	chr2:99224985-99225242(+)$1	257	97	101	11.9999
GGCU	chr17:80009724-80009975(+)$1	251	32	36	11.9999
GGCU	chr19:49622638-49622935(+)$1	297	65	69	11.9999
GGCU	chr4:78078290-78078552(+)$1	262	88	92	11.9999
GGCU	chr19:14529749-14530128(-)$1	379	263	267	11.9999
GGCU	chr15:79165278-79165498(+)$1	220	174	178	11.9999
GGCU	chr17:72868821-72869070(-)$1	249	3	7	11.9999
GGCU	chr1:87380508-87380796(+)$1	288	120	124	11.9999
GGCU	chr1:150547213-150547495(-)$1	282	46	50	11.9999
GGCU	chr19:47248972-47249302(-)$1	330	231	235	11.9999
GGCU	chr20:33872171-33872421(-)$1	250	170	174	11.9999
GGCU	chr16:29819066-29819391(+)$1	325	153	157	11.9999
GGCU	chr13:50571176-50571517(+)$1	341	14	18	11.9999
GGCU	chr11:720938-721164(+)$1	226	97	101	11.9999
ggcu	chr16:2564240-2564543(+)$1	303	102	106	11.9999
GGCU	chr6:43028056-43028323(+)$1	267	33	37	11.9999
GGCU	chr4:52709300-52709572(+)$1	272	172	176	11.9999
GGCU	chr19:42751787-42752053(-)$1	266	232	236	11.9999
GGCU	chr5:6632946-6633248(-)$1	302	1	5	11.9999

#otherMatches

#Struct PSSM
eeee	chr15:44062633-44062860(+)$1	227	21	25	11.9999
DDDL	chr16:1496199-1496462(-)$1	263	125	129	11.9999
dddd	chr3:185542652-185542943(-)$1	291	55	59	11.9999
gggg	chr18:51750680-51751072(-)$1	392	97	101	11.9999
ddd]	chr12:7037358-7037615(+)$1	257	241	245	11.9999
[hhh	chr3:197024742-197025010(-)$1	268	223	227	11.9999
{CCC	chr19:18653920-18654217(-)$1	297	5	9	11.9999
BBRR	chr17:17716173-17716432(-)$1	259	108	112	11.9999
nccc	chr19:974748-975057(+)$1	309	140	144	11.9999
eeee	chrX:114795483-114795895(+)$1	412	5	9	11.9999
b]dd	chr2:48010995-48011265(+)$1	270	159	163	11.9999
ffff	chr7:77045511-77045795(-)$1	284	159	163	11.9999
ddd[	chr20:36155942-36156194(-)$1	252	154	158	11.9999
eeee	chr7:140396905-140397180(+)$1	275	18	22	11.9999
eeee	chr9:139743389-139743618(+)$1	229	136	140	11.9999
CC{B	chr22:20862357-20862677(+)$1	320	12	16	11.9999
JJJJ	chr8:144678786-144679006(-)$1	220	86	90	11.9999
hhhh	chr8:145691408-145691670(+)$1	262	4	8	11.9999
3bb]	chr2:55844479-55844757(-)$1	278	138	142	11.9999
fff:	chr3:184043166-184043393(+)$1	227	163	167	11.9999
eee!	chr21:45736285-45736500(+)$1	215	3	7	11.9999
}CCC	chr17:74099642-74099881(-)$1	239	187	191	11.9999
dddh	chr17:77914440-77914732(-)$1	292	54	58	11.9999
dd::	chr17:40715934-40716215(+)$1	281	30	34	11.9999
gggg	chr17:38077886-38078116(-)$1	230	137	141	11.9999
eeee	chr14:21945278-21945558(+)$1	280	187	191	11.9999
gggg	chr17:1665360-1665646(+)$1	286	1	5	11.9999
"ccc	chr6:33171704-33171948(+)$1	244	34	38	11.9999
!ccc	chr15:40758357-40758623(+)$1	266	12	16	11.9999
}CCC	chr17:7155843-7156136(+)$1	293	120	124	11.9999
{EEE	chr20:42142995-42143292(+)$1	297	2	6	11.9999
iiii	chr3:47459574-47459822(-)$1	248	72	76	11.9999
BBZZ	chr11:64879339-64879593(+)$1	254	233	237	11.9999
dddd	chr9:130331091-130331382(-)$1	291	39	43	11.9999
:ccc	chr10:129924479-129924746(-)$1	267	52	56	11.9999
tttt	chr3:184100059-184100308(+)$1	249	157	161	11.9999
BBff	chr17:48796936-48797203(+)$1	267	35	39	11.9999
ceee	chr7:150777523-150777810(-)$1	287	62	66	11.9999
####	chr17:42276999-42277250(-)$1	251	55	59	11.9999
4ccc	chr17:7082325-7082533(-)$1	208	51	55	11.9999
::cc	chr16:30205874-30206163(+)$1	289	35	39	11.9999
ffpp	chr9:127998517-127998773(-)$1	256	41	45	11.9999
{CCC	chr14:32546403-32546612(+)$1	209	10	14	11.9999
dddd	chr1:33283101-33283386(+)$1	285	87	91	11.9999
FFFF	chr9:104161170-104161393(+)$1	223	32	36	11.9999
eiii	chr20:32441264-32441543(+)$1	279	86	90	11.9999
]a44	chr3:185826332-185826633(-)$1	301	109	113	11.9999
ffff	chr11:65479630-65479994(+)$1	364	20	24	11.9999
gg!!	chr3:13521756-13522020(+)$1	264	14	18	11.9999
IIII	chr3:138553552-138553810(-)$1	258	3	7	11.9999
ppee	chr9:139904716-139904992(-)$1	276	52	56	11.9999
eeee	chr19:42788617-42788879(+)$1	262	169	173	11.9999
DDD{	chr1:36788046-36788318(+)$1	272	36	40	11.9999
!fff	chr2:208576270-208576548(+)$1	278	25	29	11.9999
::::	chr6:3118972-3119305(+)$1	333	7	11	11.9999
fffp	chr16:447986-448211(+)$1	225	30	34	11.9999
hhhh	chr11:65315959-65316269(-)$1	310	67	71	11.9999
eebb	chr12:103310789-103311069(-)$1	280	188	192	11.9999
dddd	chr19:5623042-5623305(+)$1	263	224	228	11.9999
{III	chr7:102004290-102004597(+)$1	307	47	51	11.9999
oeee	chr16:30959659-30959943(+)$1	284	28	32	11.9999
eeen	chr19:49606301-49606554(+)$1	253	94	98	11.9999
dddd	chr6:44274782-44275054(-)$1	272	0	4	11.9999
::JJ	chr2:26569020-26569454(+)$1	434	82	86	11.9999
e[bb	chr2:95824943-95825224(-)$1	281	43	47	11.9999
KKFF	chr5:95297252-95297562(-)$1	310	54	58	11.9999
a[cc	chr14:24776730-24777068(+)$1	338	30	34	11.9999
EEE}	chr21:45284974-45285260(+)$1	286	244	248	11.9999
dddd	chr2:99224985-99225242(+)$1	257	97	101	11.9999
GGGG	chr17:80009724-80009975(+)$1	251	32	36	11.9999
"ddd	chr19:49622638-49622935(+)$1	297	65	69	11.9999
e22d	chr4:78078290-78078552(+)$1	262	88	92	11.9999
eeee	chr19:14529749-14530128(-)$1	379	263	267	11.9999
c[ff	chr15:79165278-79165498(+)$1	220	174	178	11.9999
EEFF	chr17:72868821-72869070(-)$1	249	3	7	11.9999
dd]b	chr1:87380508-87380796(+)$1	288	120	124	11.9999
:hhh	chr1:150547213-150547495(-)$1	282	46	50	11.9999
hhhh	chr19:47248972-47249302(-)$1	330	231	235	11.9999
ccco	chr20:33872171-33872421(-)$1	250	170	174	11.9999
cc[d	chr16:29819066-29819391(+)$1	325	153	157	11.9999
====	chr13:50571176-50571517(+)$1	341	14	18	11.9999
eeee	chr11:720938-721164(+)$1	226	97	101	11.9999
dddd	chr16:2564240-2564543(+)$1	303	102	106	11.9999
sbb]	chr6:43028056-43028323(+)$1	267	33	37	11.9999
iiii	chr4:52709300-52709572(+)$1	272	172	176	11.9999
FFFF	chr19:42751787-42752053(-)$1	266	232	236	11.9999
CCMM	chr5:6632946-6633248(-)$1	302	1	5	11.9999

#DB
((((	chr15:44062633-44062860(+)$1	1	21	25	11.9999
(((.	chr16:1496199-1496462(-)$1	1	125	129	11.9999
))))	chr3:185542652-185542943(-)$1	1	55	59	11.9999
))))	chr18:51750680-51751072(-)$1	1	97	101	11.9999
))).	chr12:7037358-7037615(+)$1	1	241	245	11.9999
.(((	chr3:197024742-197025010(-)$1	1	223	227	11.9999
.(((	chr19:18653920-18654217(-)$1	1	5	9	11.9999
((..	chr17:17716173-17716432(-)$1	1	108	112	11.9999
.)))	chr19:974748-975057(+)$1	1	140	144	11.9999
((((	chrX:114795483-114795895(+)$1	1	5	9	11.9999
).))	chr2:48010995-48011265(+)$1	1	159	163	11.9999
))))	chr7:77045511-77045795(-)$1	1	159	163	11.9999
(((.	chr20:36155942-36156194(-)$1	1	154	158	11.9999
((((	chr7:140396905-140397180(+)$1	1	18	22	11.9999
((((	chr9:139743389-139743618(+)$1	1	136	140	11.9999
((.(	chr22:20862357-20862677(+)$1	1	12	16	11.9999
))))	chr8:144678786-144679006(-)$1	1	86	90	11.9999
((((	chr8:145691408-145691670(+)$1	1	4	8	11.9999
.)).	chr2:55844479-55844757(-)$1	1	138	142	11.9999
))).	chr3:184043166-184043393(+)$1	1	163	167	11.9999
(((.	chr21:45736285-45736500(+)$1	1	3	7	11.9999
.)))	chr17:74099642-74099881(-)$1	1	187	191	11.9999
)))(	chr17:77914440-77914732(-)$1	1	54	58	11.9999
))..	chr17:40715934-40716215(+)$1	1	30	34	11.9999
((((	chr17:38077886-38078116(-)$1	1	137	141	11.9999
((((	chr14:21945278-21945558(+)$1	1	187	191	11.9999
((((	chr17:1665360-1665646(+)$1	1	1	5	11.9999
.(((	chr6:33171704-33171948(+)$1	1	34	38	11.9999
.(((	chr15:40758357-40758623(+)$1	1	12	16	11.9999
.)))	chr17:7155843-7156136(+)$1	1	120	124	11.9999
.(((	chr20:42142995-42143292(+)$1	1	2	6	11.9999
))))	chr3:47459574-47459822(-)$1	1	72	76	11.9999
))..	chr11:64879339-64879593(+)$1	1	233	237	11.9999
((((	chr9:130331091-130331382(-)$1	1	39	43	11.9999
.(((	chr10:129924479-129924746(-)$1	1	52	56	11.9999
....	chr3:184100059-184100308(+)$1	1	157	161	11.9999
((((	chr17:48796936-48797203(+)$1	1	35	39	11.9999
)(((	chr7:150777523-150777810(-)$1	1	62	66	11.9999
....	chr17:42276999-42277250(-)$1	1	55	59	11.9999
.)))	chr17:7082325-7082533(-)$1	1	51	55	11.9999
..((	chr16:30205874-30206163(+)$1	1	35	39	11.9999
((..	chr9:127998517-127998773(-)$1	1	41	45	11.9999
.(((	chr14:32546403-32546612(+)$1	1	10	14	11.9999
((((	chr1:33283101-33283386(+)$1	1	87	91	11.9999
((((	chr9:104161170-104161393(+)$1	1	32	36	11.9999
)(((	chr20:32441264-32441543(+)$1	1	86	90	11.9999
.)..	chr3:185826332-185826633(-)$1	1	109	113	11.9999
((((	chr11:65479630-65479994(+)$1	1	20	24	11.9999
((..	chr3:13521756-13522020(+)$1	1	14	18	11.9999
((((	chr3:138553552-138553810(-)$1	1	3	7	11.9999
..))	chr9:139904716-139904992(-)$1	1	52	56	11.9999
))))	chr19:42788617-42788879(+)$1	1	169	173	11.9999
(((.	chr1:36788046-36788318(+)$1	1	36	40	11.9999
.(((	chr2:208576270-208576548(+)$1	1	25	29	11.9999
....	chr6:3118972-3119305(+)$1	1	7	11	11.9999
(((.	chr16:447986-448211(+)$1	1	30	34	11.9999
))))	chr11:65315959-65316269(-)$1	1	67	71	11.9999
))))	chr12:103310789-103311069(-)$1	1	188	192	11.9999
((((	chr19:5623042-5623305(+)$1	1	224	228	11.9999
.(((	chr7:102004290-102004597(+)$1	1	47	51	11.9999
.)))	chr16:30959659-30959943(+)$1	1	28	32	11.9999
(((.	chr19:49606301-49606554(+)$1	1	94	98	11.9999
((((	chr6:44274782-44275054(-)$1	1	0	4	11.9999
..))	chr2:26569020-26569454(+)$1	1	82	86	11.9999
(.((	chr2:95824943-95825224(-)$1	1	43	47	11.9999
..((	chr5:95297252-95297562(-)$1	1	54	58	11.9999
(.((	chr14:24776730-24777068(+)$1	1	30	34	11.9999
))).	chr21:45284974-45285260(+)$1	1	244	248	11.9999
((((	chr2:99224985-99225242(+)$1	1	97	101	11.9999
((((	chr17:80009724-80009975(+)$1	1	32	36	11.9999
.(((	chr19:49622638-49622935(+)$1	1	65	69	11.9999
)..)	chr4:78078290-78078552(+)$1	1	88	92	11.9999
))))	chr19:14529749-14530128(-)$1	1	263	267	11.9999
(.((	chr15:79165278-79165498(+)$1	1	174	178	11.9999
((((	chr17:72868821-72869070(-)$1	1	3	7	11.9999
)).)	chr1:87380508-87380796(+)$1	1	120	124	11.9999
.(((	chr1:150547213-150547495(-)$1	1	46	50	11.9999
((((	chr19:47248972-47249302(-)$1	1	231	235	11.9999
(((.	chr20:33872171-33872421(-)$1	1	170	174	11.9999
((.(	chr16:29819066-29819391(+)$1	1	153	157	11.9999
((((	chr13:50571176-50571517(+)$1	1	14	18	11.9999
))))	chr11:720938-721164(+)$1	1	97	101	11.9999
))))	chr16:2564240-2564543(+)$1	1	102	106	11.9999
.)).	chr6:43028056-43028323(+)$1	1	33	37	11.9999
))))	chr4:52709300-52709572(+)$1	1	172	176	11.9999
))))	chr19:42751787-42752053(-)$1	1	232	236	11.9999
((..	chr5:6632946-6633248(-)$1	1	1	5	11.9999

#PSSM
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	
C : 0.91	c : 0.08	
U : 0.91	u : 0.08	

#score	1043.9999999999998
#seq	87
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_CDS_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
eeeeffffff!!eeeeeaccc!!ffffff[ffffffabb[eeeeedddd!!hhhhhhhh####ccc!!ggggggg[a[a[a!!ffffffbbccc[ccceeeee[gggggggmmmmgggggggeeeee]ccc333ccc]bb]ffffff22a]a]a]ggggggg4444ccchhhhhhhh333dddd]eeeee]bb]a]ffffff]ffffff22ccc]a]eeeee22ffffff]eeeeegggggggdddd!!eeeee[bb[ammmma]bb]eeeee333ddddDDDD}A}D	chr7:158621799-158622181(-)$1	382	87	375	864.0000

#DB
((((((((((..(((((((((..((((((.(((((((((.(((((((((..((((((((....(((..(((((((.(.(.(..(((((((((((.((((((((.(((((((....)))))))))))).)))...))).)).))))))..).).).)))))))....)))))))))))...)))).))))).)).).)))))).))))))..))).).)))))..)))))).))))))))))))((((..(((((.((.(....).)).)))))...)))))))).).)	chr7:158621799-158622181(-)$1	1	87	375	864.0000

#PSSM
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	

#score	864.0
#seq	1
#width	288
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_CDS_m2_run2.nuc.txt

#NT
AGCAG	chr1:19490652-19490888(-)$1	236	134	139	15.0000
AGCAG	chr16:2813911-2814152(+)$1	241	18	23	15.0000
AGCAG	chr1:19483293-19483520(-)$1	227	136	141	15.0000
AGCAG	chr11:67810715-67811052(+)$1	337	92	97	15.0000
AGCAG	chr2:232325148-232325375(-)$1	227	152	157	15.0000
AGCAG	chr16:2814528-2814767(+)$1	239	144	149	15.0000
AGCAG	chr20:60885227-60885462(-)$1	235	16	21	15.0000
AGCAG	chr7:127341134-127341411(+)$1	277	87	92	15.0000
AGCAG	chrX:70517624-70517878(+)$1	254	129	134	15.0000
AGCAG	chr2:54856638-54856894(+)$1	256	157	162	15.0000
AGCAG	chr14:24113938-24114166(+)$1	228	220	225	15.0000
AGCAG	chr1:171510113-171510367(+)$1	254	178	183	15.0000
agcag	chr14:102549353-102549619(-)$1	266	172	177	15.0000
AGCAG	chr6:52143441-52143712(-)$1	271	90	95	15.0000
AGCAG	chr22:41545777-41546099(+)$1	322	162	167	15.0000
AGCAG	chr7:103629635-103629887(-)$1	252	235	240	15.0000
AGCAG	chr22:36690062-36690303(-)$1	241	207	212	15.0000
AGCAG	chr9:116958164-116958379(+)$1	215	17	22	15.0000
AGCAG	chr2:232326498-232326771(-)$1	273	147	152	15.0000
AGCAG	chr1:67880748-67881031(-)$1	283	168	173	15.0000
AGCAG	chr2:232326205-232326473(-)$1	268	125	130	15.0000
AGCAG	chr7:148711901-148712129(-)$1	228	221	226	15.0000
AGCAG	chr5:138661102-138661446(+)$1	344	61	66	15.0000
AGCAG	chr17:79803647-79803853(-)$1	206	26	31	15.0000
AGCAG	chr1:19474425-19474680(-)$1	255	129	134	15.0000
AGCAG	chr14:39648306-39648551(+)$1	245	46	51	15.0000
AGCAG	chr2:232325103-232325348(-)$1	245	125	130	15.0000
AGCAG	chrX:152955823-152956064(+)$1	241	141	146	15.0000
AGCAG	chr2:232325089-232325303(-)$1	214	80	85	15.0000
AGCAG	chr4:1806517-1806754(+)$1	237	28	33	15.0000
AGCAG	chr19:51856276-51856562(-)$1	286	80	85	15.0000
AGCAG	chr20:62904670-62905013(+)$1	343	313	318	15.0000
AGCAG	chr20:43029850-43030149(+)$1	299	25	30	15.0000
AGCAG	chr3:49722141-49722410(-)$1	269	74	79	15.0000
AGCAG	chr21:46915219-46915445(+)$1	226	21	26	15.0000
AGCAG	chr17:1585083-1585368(-)$1	285	247	252	15.0000
AGCAG	chr2:232326431-232326673(-)$1	242	49	54	15.0000
AGCAG	chr1:245021406-245021671(-)$1	265	57	62	15.0000
AGCAG	chr3:167750212-167750481(-)$1	269	43	48	15.0000
AGCAG	chr6:144812014-144812262(+)$1	248	108	113	15.0000
AGCAG	chr1:19523554-19523823(-)$1	269	227	232	15.0000
AGCAG	chr1:19452997-19453249(-)$1	252	126	131	15.0000
AGCAG	chr1:245027002-245027293(-)$1	291	162	167	15.0000
AGCAG	chr3:58084337-58084594(+)$1	257	40	45	15.0000
AGCAG	chr3:48456292-48456542(-)$1	250	23	28	15.0000
agcag	chr19:57325487-57325717(-)$1	230	8	13	15.0000
AGCAG	chr21:46888069-46888317(+)$1	248	140	145	15.0000
AGCAG	chr17:74383439-74383714(+)$1	275	196	201	15.0000
AGCAG	chr2:54849382-54849624(+)$1	242	193	198	15.0000
AGCAG	chr20:31022371-31022647(+)$1	276	130	135	15.0000
AGCAG	chr2:27606290-27606569(-)$1	279	151	156	15.0000

#otherMatches

#Struct PSSM
EEE::	chr1:67895721-67896023(-)$1	302	138	143	15.0000
ddd]b	chr1:19490652-19490888(-)$1	236	134	139	15.0000
c####	chr16:2813911-2814152(+)$1	241	18	23	15.0000
GGBBE	chr1:19483293-19483520(-)$1	227	136	141	15.0000
llddd	chr11:67810715-67811052(+)$1	337	92	97	15.0000
vvbb2	chr2:232325148-232325375(-)$1	227	152	157	15.0000
[ccc!	chr16:2814528-2814767(+)$1	239	144	149	15.0000
nnnnd	chr20:60885227-60885462(-)$1	235	16	21	15.0000
[bb[a	chr7:127341134-127341411(+)$1	277	87	92	15.0000
cc!!f	chrX:70517624-70517878(+)$1	254	129	134	15.0000
mdddd	chr2:54856638-54856894(+)$1	256	157	162	15.0000
mbbdd	chr14:24113938-24114166(+)$1	228	220	225	15.0000
e[fff	chr1:171510113-171510367(+)$1	254	178	183	15.0000
:::::	chr14:102549353-102549619(-)$1	266	172	177	15.0000
hhhhh	chr6:52143441-52143712(-)$1	271	90	95	15.0000
!bbqq	chr22:41545777-41546099(+)$1	322	162	167	15.0000
hhh]c	chr7:103629635-103629887(-)$1	252	235	240	15.0000
}HHHH	chr22:36690062-36690303(-)$1	241	207	212	15.0000
ggggg	chr9:116958164-116958379(+)$1	215	17	22	15.0000
:::gg	chr2:232326498-232326771(-)$1	273	147	152	15.0000
mmbb]	chr1:67880748-67881031(-)$1	283	168	173	15.0000
ggggg	chr2:232326205-232326473(-)$1	268	125	130	15.0000
DDD::	chr7:148711901-148712129(-)$1	228	221	226	15.0000
ooooo	chr5:138661102-138661446(+)$1	344	61	66	15.0000
gggg[	chr17:79803647-79803853(-)$1	206	26	31	15.0000
ggggg	chr1:19474425-19474680(-)$1	255	129	134	15.0000
DDKKD	chr14:39648306-39648551(+)$1	245	46	51	15.0000
vvbb2	chr2:232325103-232325348(-)$1	245	125	130	15.0000
ggggg	chrX:152955823-152956064(+)$1	241	141	146	15.0000
vvbb2	chr2:232325089-232325303(-)$1	214	80	85	15.0000
FFFNN	chr4:1806517-1806754(+)$1	237	28	33	15.0000
ccctt	chr19:51856276-51856562(-)$1	286	80	85	15.0000
ddddl	chr20:62904670-62905013(+)$1	343	313	318	15.0000
f$$$$	chr20:43029850-43030149(+)$1	299	25	30	15.0000
bb:dd	chr3:49722141-49722410(-)$1	269	74	79	15.0000
FFA{E	chr21:46915219-46915445(+)$1	226	21	26	15.0000
YFFFF	chr17:1585083-1585368(-)$1	285	247	252	15.0000
:::gg	chr2:232326431-232326673(-)$1	242	49	54	15.0000
fffff	chr1:245021406-245021671(-)$1	265	57	62	15.0000
JJJDD	chr3:167750212-167750481(-)$1	269	43	48	15.0000
!!===	chr6:144812014-144812262(+)$1	248	108	113	15.0000
cbb]c	chr1:19523554-19523823(-)$1	269	227	232	15.0000
gggbb	chr1:19452997-19453249(-)$1	252	126	131	15.0000
[bbmm	chr1:245027002-245027293(-)$1	291	162	167	15.0000
cc]a]	chr3:58084337-58084594(+)$1	257	40	45	15.0000
[ffff	chr3:48456292-48456542(-)$1	250	23	28	15.0000
mmmme	chr19:57325487-57325717(-)$1	230	8	13	15.0000
mbb]d	chr21:46888069-46888317(+)$1	248	140	145	15.0000
cdddd	chr17:74383439-74383714(+)$1	275	196	201	15.0000
DDDDZ	chr2:54849382-54849624(+)$1	242	193	198	15.0000
!!ccc	chr20:31022371-31022647(+)$1	276	130	135	15.0000
2bb]d	chr2:27606290-27606569(-)$1	279	151	156	15.0000

#DB
)))..	chr1:67895721-67896023(-)$1	1	138	143	15.0000
))).)	chr1:19490652-19490888(-)$1	1	134	139	15.0000
(....	chr16:2813911-2814152(+)$1	1	18	23	15.0000
)))))	chr1:19483293-19483520(-)$1	1	136	141	15.0000
..)))	chr11:67810715-67811052(+)$1	1	92	97	15.0000
..)).	chr2:232325148-232325375(-)$1	1	152	157	15.0000
.(((.	chr16:2814528-2814767(+)$1	1	144	149	15.0000
....)	chr20:60885227-60885462(-)$1	1	16	21	15.0000
.((.(	chr7:127341134-127341411(+)$1	1	87	92	15.0000
((..(	chrX:70517624-70517878(+)$1	1	129	134	15.0000
.))))	chr2:54856638-54856894(+)$1	1	157	162	15.0000
.))))	chr14:24113938-24114166(+)$1	1	220	225	15.0000
(.(((	chr1:171510113-171510367(+)$1	1	178	183	15.0000
.....	chr14:102549353-102549619(-)$1	1	172	177	15.0000
)))))	chr6:52143441-52143712(-)$1	1	90	95	15.0000
.((..	chr22:41545777-41546099(+)$1	1	162	167	15.0000
))).)	chr7:103629635-103629887(-)$1	1	235	240	15.0000
.))))	chr22:36690062-36690303(-)$1	1	207	212	15.0000
(((((	chr9:116958164-116958379(+)$1	1	17	22	15.0000
...((	chr2:232326498-232326771(-)$1	1	147	152	15.0000
..)).	chr1:67880748-67881031(-)$1	1	168	173	15.0000
(((((	chr2:232326205-232326473(-)$1	1	125	130	15.0000
)))..	chr7:148711901-148712129(-)$1	1	221	226	15.0000
.....	chr5:138661102-138661446(+)$1	1	61	66	15.0000
((((.	chr17:79803647-79803853(-)$1	1	26	31	15.0000
)))))	chr1:19474425-19474680(-)$1	1	129	134	15.0000
((..(	chr14:39648306-39648551(+)$1	1	46	51	15.0000
..)).	chr2:232325103-232325348(-)$1	1	125	130	15.0000
)))))	chrX:152955823-152956064(+)$1	1	141	146	15.0000
..)).	chr2:232325089-232325303(-)$1	1	80	85	15.0000
(((..	chr4:1806517-1806754(+)$1	1	28	33	15.0000
(((..	chr19:51856276-51856562(-)$1	1	80	85	15.0000
((((.	chr20:62904670-62905013(+)$1	1	313	318	15.0000
(....	chr20:43029850-43030149(+)$1	1	25	30	15.0000
)).((	chr3:49722141-49722410(-)$1	1	74	79	15.0000
(((.(	chr21:46915219-46915445(+)$1	1	21	26	15.0000
.))))	chr17:1585083-1585368(-)$1	1	247	252	15.0000
...((	chr2:232326431-232326673(-)$1	1	49	54	15.0000
)))))	chr1:245021406-245021671(-)$1	1	57	62	15.0000
(((((	chr3:167750212-167750481(-)$1	1	43	48	15.0000
..(((	chr6:144812014-144812262(+)$1	1	108	113	15.0000
))).)	chr1:19523554-19523823(-)$1	1	227	232	15.0000
(((((	chr1:19452997-19453249(-)$1	1	126	131	15.0000
.((..	chr1:245027002-245027293(-)$1	1	162	167	15.0000
)).).	chr3:58084337-58084594(+)$1	1	40	45	15.0000
.((((	chr3:48456292-48456542(-)$1	1	23	28	15.0000
....)	chr19:57325487-57325717(-)$1	1	8	13	15.0000
.)).)	chr21:46888069-46888317(+)$1	1	140	145	15.0000
)))))	chr17:74383439-74383714(+)$1	1	196	201	15.0000
)))).	chr2:54849382-54849624(+)$1	1	193	198	15.0000
..(((	chr20:31022371-31022647(+)$1	1	130	135	15.0000
.)).)	chr2:27606290-27606569(-)$1	1	151	156	15.0000

#PSSM
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
C : 0.96	c : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	

#score	780.0000000000001
#seq	52
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_transcript_m2_run1.nuc.txt

#NT
CUU	chr1:31754179-31754457(-)$1	278	39	42	8.9999
CUU	chr6:126332065-126332333(+)$1	268	40	43	8.9999
CUU	chr1:24304648-24304876(-)$1	228	8	11	8.9999
CUU	chr2:95772067-95772306(-)$1	239	1	4	8.9999
CUU	chr6:136582222-136582468(-)$1	246	80	83	8.9999
CUU	chr9:86586432-86586657(-)$1	225	9	12	8.9999
CUU	chr1:44443542-44443782(+)$1	240	2	5	8.9999
CUU	chr16:56968986-56969277(+)$1	291	9	12	8.9999
CUU	chr6:33170569-33170813(+)$1	244	99	102	8.9999
CUU	chr17:35468435-35468694(-)$1	259	62	65	8.9999
CUU	chr19:6422128-6422397(-)$1	269	65	68	8.9999
CUU	chr11:63714293-63714572(+)$1	279	63	66	8.9999
CUU	chr12:9913207-9913478(-)$1	271	7	10	8.9999
CUU	chr19:30804045-30804271(+)$1	226	9	12	8.9999
CUU	chr5:145859483-145859749(+)$1	266	17	20	8.9999
CUU	chr3:150176052-150176326(+)$1	274	28	31	8.9999
CUU	chr1:144916591-144916873(-)$1	282	7	10	8.9999
cuu	chr1:54252797-54253057(-)$1	260	17	20	8.9999
CUU	chr4:166261258-166261515(+)$1	257	96	99	8.9999
CUU	chr2:175252275-175252576(-)$1	301	55	58	8.9999
CUU	chr7:112098916-112099197(+)$1	281	43	46	8.9999
CUU	chr20:33000210-33000464(+)$1	254	18	21	8.9999
CUU	chr1:223957482-223957765(+)$1	283	40	43	8.9999
CUU	chr3:50099262-50099539(+)$1	277	9	12	8.9999
CUU	chr1:215747306-215747585(+)$1	279	13	16	8.9999
CUU	chr1:151400761-151401006(-)$1	245	39	42	8.9999
CUU	chr1:100203702-100203938(-)$1	236	30	33	8.9999
CUU	chr2:114670632-114670941(+)$1	309	32	35	8.9999
CUU	chr15:59113894-59114181(+)$1	287	85	88	8.9999
CUU	chr15:41246298-41246566(+)$1	268	29	32	8.9999
CUU	chr12:46764408-46764707(-)$1	299	4	7	8.9999
CUU	chr20:61845139-61845419(-)$1	280	46	49	8.9999
CUU	chr8:22885120-22885373(-)$1	253	60	63	8.9999
cuu	chr5:145602836-145603089(+)$1	253	56	59	8.9999
CUU	chr4:83820752-83821012(-)$1	260	27	30	8.9999
CUU	chr6:43745794-43746082(+)$1	288	56	59	8.9999
CUU	chrX:48664637-48664923(+)$1	286	5	8	8.9999
CUU	chr12:8082908-8083142(-)$1	234	76	79	8.9999
CUU	chr19:47285437-47285710(-)$1	273	9	12	8.9999
CUU	chr9:100777579-100777803(+)$1	224	27	30	8.9999
CUU	chr18:2700408-2700676(+)$1	268	25	28	8.9999
CUU	chr17:45738369-45738616(+)$1	247	37	40	8.9999
cuu	chr19:9533943-9534174(-)$1	231	14	17	8.9999
CUU	chr2:111425155-111425436(-)$1	281	19	22	8.9999
CUU	chr1:151028174-151028436(-)$1	262	57	60	8.9999
CUU	chr22:38887991-38888229(-)$1	238	4	7	8.9999
CUU	chr20:31017551-31017854(+)$1	303	88	91	8.9999
CUU	chr19:18548145-18548399(-)$1	254	24	27	8.9999
CUU	chr12:96676095-96676379(-)$1	284	52	55	8.9999
CUU	chr5:32395179-32395443(-)$1	264	16	19	8.9999
CUU	chr4:100869961-100870200(-)$1	239	55	58	8.9999
CUU	chr2:99992751-99993029(+)$1	278	49	52	8.9999
CUU	chr5:138653300-138653557(+)$1	257	31	34	8.9999
CUU	chr21:30434747-30434990(-)$1	243	42	45	8.9999
CUU	chr16:21987451-21987747(+)$1	296	17	20	8.9999
cuu	chr17:26962499-26962754(-)$1	255	16	19	8.9999
CUU	chr3:119155704-119155967(-)$1	263	2	5	8.9999
CUU	chr9:95080812-95081120(-)$1	308	4	7	8.9999
cuu	chr1:47767868-47768167(-)$1	299	8	11	8.9999
CUU	chr22:42276606-42276856(+)$1	250	96	99	8.9999
CUU	chr1:205057808-205058066(-)$1	258	11	14	8.9999
CUU	chr17:40618333-40618654(+)$1	321	33	36	8.9999
CUU	chr18:9122414-9122647(+)$1	233	23	26	8.9999
CUU	chr11:120307908-120308220(+)$1	312	41	44	8.9999
CUU	chr9:128002456-128002752(-)$1	296	12	15	8.9999
CUU	chr4:80993378-80993680(-)$1	302	91	94	8.9999
CUU	chr12:122992859-122993104(-)$1	245	5	8	8.9999
CUU	chr3:47144699-47144942(-)$1	243	6	9	8.9999
CUU	chr8:64081813-64082112(+)$1	299	45	48	8.9999
CUU	chr1:46078714-46078980(+)$1	266	7	10	8.9999
cuu	chr2:48025632-48025884(+)$1	252	57	60	8.9999
CUU	chr18:209918-210183(+)$1	265	96	99	8.9999
CUU	chr6:91261579-91261872(-)$1	293	49	52	8.9999
CUU	chr17:44143954-44144231(-)$1	277	0	3	8.9999
CUU	chr7:104809438-104809734(-)$1	296	1	4	8.9999
CUU	chr15:49031388-49031654(-)$1	266	10	13	8.9999
CUU	chr9:100774634-100774855(+)$1	221	16	19	8.9999
CUU	chr5:65473259-65473598(+)$1	339	37	40	8.9999
CUU	chr10:3821640-3821916(-)$1	276	2	5	8.9999
CUU	chr7:5778848-5779093(-)$1	245	1	4	8.9999
CUU	chr22:45726359-45726611(+)$1	252	17	20	8.9999
cuu	chr16:24807081-24807333(+)$1	252	22	25	8.9999
CUU	chr19:10782142-10782389(+)$1	247	63	66	8.9999
CUU	chr20:34326705-34326957(-)$1	252	13	16	8.9999
CUU	chr2:48063015-48063254(-)$1	239	1	4	8.9999
CUU	chr2:53941347-53941602(-)$1	255	35	38	8.9999
CUU	chr6:79688302-79688537(-)$1	235	5	8	8.9999
CUU	chr1:113642682-113642953(+)$1	271	62	65	8.9999
CUU	chrX:53436251-53436535(-)$1	284	5	8	8.9999
CUU	chr21:34931562-34931818(+)$1	256	61	64	8.9999
CUU	chr19:34884912-34885136(+)$1	224	37	40	8.9999
CUU	chr5:33448531-33448772(+)$1	241	44	47	8.9999
CUU	chr11:118650203-118650522(-)$1	319	61	64	8.9999
CUU	chr2:148693121-148693414(-)$1	293	32	35	8.9999
CUU	chr1:234744034-234744296(-)$1	262	15	18	8.9999
CUU	chr7:1488251-1488502(-)$1	251	2	5	8.9999
CUU	chr6:49582883-49583160(-)$1	277	71	74	8.9999
CUU	chr7:104681151-104681404(+)$1	253	67	70	8.9999

#otherMatches

#Struct PSSM
cee	chr15:63866126-63866372(+)$1	246	35	38	8.9999
###	chr1:31754179-31754457(-)$1	278	39	42	8.9999
ccf	chr6:126332065-126332333(+)$1	268	40	43	8.9999
EEE	chr1:24304648-24304876(-)$1	228	8	11	8.9999
fff	chr2:95772067-95772306(-)$1	239	1	4	8.9999
fff	chr6:136582222-136582468(-)$1	246	80	83	8.9999
:::	chr9:86586432-86586657(-)$1	225	9	12	8.9999
DDL	chr1:44443542-44443782(+)$1	240	2	5	8.9999
"dd	chr16:56968986-56969277(+)$1	291	9	12	8.9999
==f	chr6:33170569-33170813(+)$1	244	99	102	8.9999
:::	chr17:35468435-35468694(-)$1	259	62	65	8.9999
c##	chr19:6422128-6422397(-)$1	269	65	68	8.9999
$$$	chr11:63714293-63714572(+)$1	279	63	66	8.9999
bbq	chr12:9913207-9913478(-)$1	271	7	10	8.9999
GGG	chr19:30804045-30804271(+)$1	226	9	12	8.9999
{II	chr5:145859483-145859749(+)$1	266	17	20	8.9999
ddd	chr3:150176052-150176326(+)$1	274	28	31	8.9999
h^^	chr1:144916591-144916873(-)$1	282	7	10	8.9999
HHK	chr1:54252797-54253057(-)$1	260	17	20	8.9999
iii	chr4:166261258-166261515(+)$1	257	96	99	8.9999
FFF	chr2:175252275-175252576(-)$1	301	55	58	8.9999
333	chr7:112098916-112099197(+)$1	281	43	46	8.9999
+++	chr20:33000210-33000464(+)$1	254	18	21	8.9999
GGG	chr1:223957482-223957765(+)$1	283	40	43	8.9999
HHH	chr3:50099262-50099539(+)$1	277	9	12	8.9999
DDD	chr1:215747306-215747585(+)$1	279	13	16	8.9999
nee	chr1:151400761-151401006(-)$1	245	39	42	8.9999
sss	chr1:100203702-100203938(-)$1	236	30	33	8.9999
KKD	chr2:114670632-114670941(+)$1	309	32	35	8.9999
d::	chr15:59113894-59114181(+)$1	287	85	88	8.9999
qqq	chr15:41246298-41246566(+)$1	268	29	32	8.9999
:::	chr12:46764408-46764707(-)$1	299	4	7	8.9999
!!d	chr20:61845139-61845419(-)$1	280	46	49	8.9999
gdd	chr8:22885120-22885373(-)$1	253	60	63	8.9999
b]e	chr5:145602836-145603089(+)$1	253	56	59	8.9999
fff	chr4:83820752-83821012(-)$1	260	27	30	8.9999
eee	chr6:43745794-43746082(+)$1	288	56	59	8.9999
d%%	chrX:48664637-48664923(+)$1	286	5	8	8.9999
c""	chr12:8082908-8083142(-)$1	234	76	79	8.9999
hhh	chr19:47285437-47285710(-)$1	273	9	12	8.9999
eee	chr9:100777579-100777803(+)$1	224	27	30	8.9999
ppp	chr18:2700408-2700676(+)$1	268	25	28	8.9999
ddd	chr17:45738369-45738616(+)$1	247	37	40	8.9999
ooc	chr19:9533943-9534174(-)$1	231	14	17	8.9999
EED	chr2:111425155-111425436(-)$1	281	19	22	8.9999
GGG	chr1:151028174-151028436(-)$1	262	57	60	8.9999
EKK	chr22:38887991-38888229(-)$1	238	4	7	8.9999
eee	chr20:31017551-31017854(+)$1	303	88	91	8.9999
ccc	chr19:18548145-18548399(-)$1	254	24	27	8.9999
ddd	chr12:96676095-96676379(-)$1	284	52	55	8.9999
FFF	chr5:32395179-32395443(-)$1	264	16	19	8.9999
NND	chr4:100869961-100870200(-)$1	239	55	58	8.9999
hhh	chr2:99992751-99993029(+)$1	278	49	52	8.9999
ddd	chr5:138653300-138653557(+)$1	257	31	34	8.9999
DDD	chr21:30434747-30434990(-)$1	243	42	45	8.9999
sss	chr16:21987451-21987747(+)$1	296	17	20	8.9999
::e	chr17:26962499-26962754(-)$1	255	16	19	8.9999
:::	chr3:119155704-119155967(-)$1	263	2	5	8.9999
:::	chr9:95080812-95081120(-)$1	308	4	7	8.9999
LLL	chr1:47767868-47768167(-)$1	299	8	11	8.9999
:HH	chr22:42276606-42276856(+)$1	250	96	99	8.9999
JDD	chr1:205057808-205058066(-)$1	258	11	14	8.9999
DDD	chr17:40618333-40618654(+)$1	321	33	36	8.9999
F{E	chr18:9122414-9122647(+)$1	233	23	26	8.9999
===	chr11:120307908-120308220(+)$1	312	41	44	8.9999
[dd	chr9:128002456-128002752(-)$1	296	12	15	8.9999
fff	chr4:80993378-80993680(-)$1	302	91	94	8.9999
ooo	chr12:122992859-122993104(-)$1	245	5	8	8.9999
JJJ	chr3:47144699-47144942(-)$1	243	6	9	8.9999
b]e	chr8:64081813-64082112(+)$1	299	45	48	8.9999
{DD	chr1:46078714-46078980(+)$1	266	7	10	8.9999
ccc	chr2:48025632-48025884(+)$1	252	57	60	8.9999
ccc	chr18:209918-210183(+)$1	265	96	99	8.9999
FFF	chr6:91261579-91261872(-)$1	293	49	52	8.9999
:::	chr17:44143954-44144231(-)$1	277	0	3	8.9999
:::	chr7:104809438-104809734(-)$1	296	1	4	8.9999
i""	chr15:49031388-49031654(-)$1	266	10	13	8.9999
GGG	chr9:100774634-100774855(+)$1	221	16	19	8.9999
ooo	chr5:65473259-65473598(+)$1	339	37	40	8.9999
DD{	chr10:3821640-3821916(-)$1	276	2	5	8.9999
:::	chr7:5778848-5779093(-)$1	245	1	4	8.9999
c%%	chr22:45726359-45726611(+)$1	252	17	20	8.9999
eee	chr16:24807081-24807333(+)$1	252	22	25	8.9999
]cc	chr19:10782142-10782389(+)$1	247	63	66	8.9999
hhh	chr20:34326705-34326957(-)$1	252	13	16	8.9999
:::	chr2:48063015-48063254(-)$1	239	1	4	8.9999
c[c	chr2:53941347-53941602(-)$1	255	35	38	8.9999
A{B	chr6:79688302-79688537(-)$1	235	5	8	8.9999
fff	chr1:113642682-113642953(+)$1	271	62	65	8.9999
EEE	chrX:53436251-53436535(-)$1	284	5	8	8.9999
===	chr21:34931562-34931818(+)$1	256	61	64	8.9999
"gg	chr19:34884912-34885136(+)$1	224	37	40	8.9999
vvv	chr5:33448531-33448772(+)$1	241	44	47	8.9999
hhh	chr11:118650203-118650522(-)$1	319	61	64	8.9999
CCN	chr2:148693121-148693414(-)$1	293	32	35	8.9999
eee	chr1:234744034-234744296(-)$1	262	15	18	8.9999
ccc	chr7:1488251-1488502(-)$1	251	2	5	8.9999
ppe	chr6:49582883-49583160(-)$1	277	71	74	8.9999
eee	chr7:104681151-104681404(+)$1	253	67	70	8.9999

#DB
(((	chr15:63866126-63866372(+)$1	1	35	38	8.9999
...	chr1:31754179-31754457(-)$1	1	39	42	8.9999
(((	chr6:126332065-126332333(+)$1	1	40	43	8.9999
(((	chr1:24304648-24304876(-)$1	1	8	11	8.9999
(((	chr2:95772067-95772306(-)$1	1	1	4	8.9999
)))	chr6:136582222-136582468(-)$1	1	80	83	8.9999
...	chr9:86586432-86586657(-)$1	1	9	12	8.9999
((.	chr1:44443542-44443782(+)$1	1	2	5	8.9999
.((	chr16:56968986-56969277(+)$1	1	9	12	8.9999
))(	chr6:33170569-33170813(+)$1	1	99	102	8.9999
...	chr17:35468435-35468694(-)$1	1	62	65	8.9999
(..	chr19:6422128-6422397(-)$1	1	65	68	8.9999
...	chr11:63714293-63714572(+)$1	1	63	66	8.9999
((.	chr12:9913207-9913478(-)$1	1	7	10	8.9999
(((	chr19:30804045-30804271(+)$1	1	9	12	8.9999
.((	chr5:145859483-145859749(+)$1	1	17	20	8.9999
(((	chr3:150176052-150176326(+)$1	1	28	31	8.9999
(..	chr1:144916591-144916873(-)$1	1	7	10	8.9999
((.	chr1:54252797-54253057(-)$1	1	17	20	8.9999
)))	chr4:166261258-166261515(+)$1	1	96	99	8.9999
(((	chr2:175252275-175252576(-)$1	1	55	58	8.9999
...	chr7:112098916-112099197(+)$1	1	43	46	8.9999
...	chr20:33000210-33000464(+)$1	1	18	21	8.9999
(((	chr1:223957482-223957765(+)$1	1	40	43	8.9999
(((	chr3:50099262-50099539(+)$1	1	9	12	8.9999
(((	chr1:215747306-215747585(+)$1	1	13	16	8.9999
.))	chr1:151400761-151401006(-)$1	1	39	42	8.9999
...	chr1:100203702-100203938(-)$1	1	30	33	8.9999
..(	chr2:114670632-114670941(+)$1	1	32	35	8.9999
)..	chr15:59113894-59114181(+)$1	1	85	88	8.9999
...	chr15:41246298-41246566(+)$1	1	29	32	8.9999
...	chr12:46764408-46764707(-)$1	1	4	7	8.9999
..(	chr20:61845139-61845419(-)$1	1	46	49	8.9999
)((	chr8:22885120-22885373(-)$1	1	60	63	8.9999
).)	chr5:145602836-145603089(+)$1	1	56	59	8.9999
)))	chr4:83820752-83821012(-)$1	1	27	30	8.9999
(((	chr6:43745794-43746082(+)$1	1	56	59	8.9999
(..	chrX:48664637-48664923(+)$1	1	5	8	8.9999
(..	chr12:8082908-8083142(-)$1	1	76	79	8.9999
(((	chr19:47285437-47285710(-)$1	1	9	12	8.9999
(((	chr9:100777579-100777803(+)$1	1	27	30	8.9999
...	chr18:2700408-2700676(+)$1	1	25	28	8.9999
)))	chr17:45738369-45738616(+)$1	1	37	40	8.9999
..)	chr19:9533943-9534174(-)$1	1	14	17	8.9999
(((	chr2:111425155-111425436(-)$1	1	19	22	8.9999
(((	chr1:151028174-151028436(-)$1	1	57	60	8.9999
(..	chr22:38887991-38888229(-)$1	1	4	7	8.9999
)))	chr20:31017551-31017854(+)$1	1	88	91	8.9999
(((	chr19:18548145-18548399(-)$1	1	24	27	8.9999
)))	chr12:96676095-96676379(-)$1	1	52	55	8.9999
(((	chr5:32395179-32395443(-)$1	1	16	19	8.9999
..(	chr4:100869961-100870200(-)$1	1	55	58	8.9999
(((	chr2:99992751-99993029(+)$1	1	49	52	8.9999
)))	chr5:138653300-138653557(+)$1	1	31	34	8.9999
(((	chr21:30434747-30434990(-)$1	1	42	45	8.9999
...	chr16:21987451-21987747(+)$1	1	17	20	8.9999
..(	chr17:26962499-26962754(-)$1	1	16	19	8.9999
...	chr3:119155704-119155967(-)$1	1	2	5	8.9999
...	chr9:95080812-95081120(-)$1	1	4	7	8.9999
...	chr1:47767868-47768167(-)$1	1	8	11	8.9999
.))	chr22:42276606-42276856(+)$1	1	96	99	8.9999
(((	chr1:205057808-205058066(-)$1	1	11	14	8.9999
(((	chr17:40618333-40618654(+)$1	1	33	36	8.9999
(.(	chr18:9122414-9122647(+)$1	1	23	26	8.9999
(((	chr11:120307908-120308220(+)$1	1	41	44	8.9999
.((	chr9:128002456-128002752(-)$1	1	12	15	8.9999
(((	chr4:80993378-80993680(-)$1	1	91	94	8.9999
...	chr12:122992859-122993104(-)$1	1	5	8	8.9999
(((	chr3:47144699-47144942(-)$1	1	6	9	8.9999
).)	chr8:64081813-64082112(+)$1	1	45	48	8.9999
.((	chr1:46078714-46078980(+)$1	1	7	10	8.9999
)))	chr2:48025632-48025884(+)$1	1	57	60	8.9999
)))	chr18:209918-210183(+)$1	1	96	99	8.9999
(((	chr6:91261579-91261872(-)$1	1	49	52	8.9999
...	chr17:44143954-44144231(-)$1	1	0	3	8.9999
...	chr7:104809438-104809734(-)$1	1	1	4	8.9999
(..	chr15:49031388-49031654(-)$1	1	10	13	8.9999
(((	chr9:100774634-100774855(+)$1	1	16	19	8.9999
...	chr5:65473259-65473598(+)$1	1	37	40	8.9999
((.	chr10:3821640-3821916(-)$1	1	2	5	8.9999
...	chr7:5778848-5779093(-)$1	1	1	4	8.9999
(..	chr22:45726359-45726611(+)$1	1	17	20	8.9999
(((	chr16:24807081-24807333(+)$1	1	22	25	8.9999
.))	chr19:10782142-10782389(+)$1	1	63	66	8.9999
(((	chr20:34326705-34326957(-)$1	1	13	16	8.9999
...	chr2:48063015-48063254(-)$1	1	1	4	8.9999
(.(	chr2:53941347-53941602(-)$1	1	35	38	8.9999
(.(	chr6:79688302-79688537(-)$1	1	5	8	8.9999
(((	chr1:113642682-113642953(+)$1	1	62	65	8.9999
(((	chrX:53436251-53436535(-)$1	1	5	8	8.9999
)))	chr21:34931562-34931818(+)$1	1	61	64	8.9999
.((	chr19:34884912-34885136(+)$1	1	37	40	8.9999
...	chr5:33448531-33448772(+)$1	1	44	47	8.9999
(((	chr11:118650203-118650522(-)$1	1	61	64	8.9999
((.	chr2:148693121-148693414(-)$1	1	32	35	8.9999
(((	chr1:234744034-234744296(-)$1	1	15	18	8.9999
(((	chr7:1488251-1488502(-)$1	1	2	5	8.9999
..)	chr6:49582883-49583160(-)$1	1	71	74	8.9999
)))	chr7:104681151-104681404(+)$1	1	67	70	8.9999

#PSSM
C : 0.92	c : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_UTR_m3_run2.nuc.txt

#NT
ACA	chr18:9594805-9595154(-)$1	349	18	21	9.0000
ACA	chr16:66851256-66851498(-)$1	242	54	57	9.0000
ACA	chr5:140048494-140048738(+)$1	244	7	10	9.0000
ACA	chr2:100037989-100038271(-)$1	282	94	97	9.0000
ACA	chr11:68358024-68358277(+)$1	253	78	81	9.0000
ACA	chr17:40146828-40147124(-)$1	296	8	11	9.0000
ACA	chr4:80992678-80992947(-)$1	269	4	7	9.0000
ACA	chr12:110770363-110770657(+)$1	294	34	37	9.0000
ACA	chr4:83820752-83821012(-)$1	260	2	5	9.0000
ACA	chr11:2972395-2972653(-)$1	258	57	60	9.0000
ACA	chr4:89670033-89670290(-)$1	257	29	32	9.0000
ACA	chr2:135815465-135815787(+)$1	322	55	58	9.0000
ACA	chr11:93466132-93466435(-)$1	303	36	39	9.0000
ACA	chr7:77236433-77236688(+)$1	255	44	47	9.0000
ACA	chr6:4061810-4062086(+)$1	276	74	77	9.0000
ACA	chr16:255896-256145(-)$1	249	10	13	9.0000
ACA	chr8:42251603-42251854(+)$1	251	9	12	9.0000
ACA	chr10:5947870-5948119(+)$1	249	31	34	9.0000
ACA	chr7:131099352-131099608(+)$1	256	113	116	9.0000
ACA	chr18:33720983-33721226(+)$1	243	39	42	9.0000
ACA	chr17:73142616-73142893(-)$1	277	12	15	9.0000
ACA	chr1:52215677-52215953(+)$1	276	48	51	9.0000
ACA	chr6:13617888-13618148(+)$1	260	54	57	9.0000
ACA	chr3:180325825-180326084(+)$1	259	52	55	9.0000
ACA	chr15:79172748-79172989(+)$1	241	127	130	9.0000
aca	chr12:123665593-123665869(-)$1	276	5	8	9.0000
ACA	chr5:33448531-33448772(+)$1	241	140	143	9.0000
ACA	chr3:25654067-25654304(-)$1	237	19	22	9.0000
ACA	chr17:62499847-62500121(-)$1	274	12	15	9.0000
ACA	chr3:156869897-156870154(-)$1	257	19	22	9.0000
ACA	chr6:41904971-41905241(-)$1	270	165	168	9.0000
ACA	chr5:137902725-137902971(-)$1	246	2	5	9.0000
ACA	chr1:205057808-205058066(-)$1	258	65	68	9.0000
ACA	chr15:79178427-79178686(+)$1	259	12	15	9.0000
ACA	chr15:69075187-69075429(-)$1	242	33	36	9.0000
ACA	chr20:33000210-33000464(+)$1	254	134	137	9.0000
ACA	chr12:120109988-120110257(+)$1	269	30	33	9.0000
ACA	chr14:70237019-70237388(+)$1	369	0	3	9.0000
aca	chr3:20016959-20017235(+)$1	276	3	6	9.0000
ACA	chr1:52212267-52212569(+)$1	302	11	14	9.0000
ACA	chrX:135958522-135958767(-)$1	245	145	148	9.0000
ACA	chr15:101826960-101827230(-)$1	270	50	53	9.0000
ACA	chr3:50099262-50099539(+)$1	277	94	97	9.0000
ACA	chr5:175782605-175782861(-)$1	256	12	15	9.0000
ACA	chr2:38536378-38536673(-)$1	295	169	172	9.0000
ACA	chr12:98987419-98987710(+)$1	291	14	17	9.0000
ACA	chr1:24304648-24304876(-)$1	228	40	43	9.0000
ACA	chr15:55483119-55483361(-)$1	242	27	30	9.0000
ACA	chr12:7031345-7031609(+)$1	264	204	207	9.0000
ACA	chr6:91260111-91260385(-)$1	274	20	23	9.0000
ACA	chr7:30639455-30639686(+)$1	231	103	106	9.0000
ACA	chr8:124796572-124796848(+)$1	276	227	230	9.0000
ACA	chr1:46124687-46124932(-)$1	245	1	4	9.0000
ACA	chr15:40329108-40329321(-)$1	213	194	197	9.0000
ACA	chr16:66858633-66858900(-)$1	267	2	5	9.0000
ACA	chr7:104681151-104681404(+)$1	253	130	133	9.0000
aca	chr11:62609007-62609214(-)$1	207	15	18	9.0000
ACA	chr1:46078714-46078980(+)$1	266	201	204	9.0000
ACA	chr15:40990800-40991172(+)$1	372	19	22	9.0000
ACA	chr1:249151733-249152032(-)$1	299	52	55	9.0000
ACA	chr9:134107590-134107822(+)$1	232	6	9	9.0000
ACA	chr3:50140373-50140636(+)$1	263	94	97	9.0000
ACA	chr12:72004742-72004985(-)$1	243	7	10	9.0000
ACA	chr17:37590458-37590706(-)$1	248	201	204	9.0000
ACA	chr18:2752360-2752595(+)$1	235	25	28	9.0000
ACA	chr1:24297887-24298134(-)$1	247	62	65	9.0000
ACA	chr1:76255709-76255967(+)$1	258	209	212	9.0000
ACA	chr6:4064918-4065180(+)$1	262	20	23	9.0000
ACA	chr3:195791070-195791296(-)$1	226	65	68	9.0000
aca	chr7:56169424-56169677(-)$1	253	3	6	9.0000
ACA	chr2:177195175-177195437(+)$1	262	60	63	9.0000
ACA	chr17:43182840-43183113(+)$1	273	31	34	9.0000
ACA	chrX:135954318-135954636(-)$1	318	4	7	9.0000
ACA	chr1:224492673-224492975(-)$1	302	26	29	9.0000
ACA	chr2:70454729-70454999(-)$1	270	86	89	9.0000
ACA	chr16:74682970-74683273(-)$1	303	52	55	9.0000
ACA	chr10:70520848-70521068(+)$1	220	16	19	9.0000
ACA	chr4:48533032-48533291(-)$1	259	23	26	9.0000
ACA	chr1:29485878-29486110(-)$1	232	165	168	9.0000
ACA	chr6:43594517-43594826(-)$1	309	6	9	9.0000
ACA	chr6:35856579-35856816(-)$1	237	189	192	9.0000
ACA	chr6:32943001-32943264(+)$1	263	7	10	9.0000
ACA	chr14:53175052-53175353(+)$1	301	38	41	9.0000
ACA	chr11:61732278-61732524(-)$1	246	34	37	9.0000
ACA	chr17:74732037-74732299(-)$1	262	84	87	9.0000
ACA	chr8:61531039-61531321(+)$1	282	111	114	9.0000
ACA	chr16:56970488-56970732(+)$1	244	30	33	9.0000
ACA	chr6:26138169-26138426(+)$1	257	213	216	9.0000
ACA	chr5:10254108-10254415(+)$1	307	43	46	9.0000
ACA	chr16:66857085-66857329(-)$1	244	139	142	9.0000
aca	chr6:10894334-10894620(+)$1	286	266	269	9.0000
ACA	chr19:8553443-8553708(+)$1	265	85	88	9.0000
ACA	chr2:70516320-70516639(-)$1	319	143	146	9.0000
ACA	chr3:197023927-197024226(-)$1	299	78	81	9.0000
ACA	chr4:113565722-113566004(+)$1	282	17	20	9.0000
ACA	chrX:12994157-12994406(+)$1	249	154	157	9.0000
ACA	chr3:195789623-195789907(-)$1	284	212	215	9.0000

#otherMatches

#Struct PSSM
:::	chrX:135961350-135961599(-)$1	249	11	14	9.0000
eee	chr18:9594805-9595154(-)$1	349	18	21	9.0000
%%%	chr16:66851256-66851498(-)$1	242	54	57	9.0000
:::	chr5:140048494-140048738(+)$1	244	7	10	9.0000
[cc	chr2:100037989-100038271(-)$1	282	94	97	9.0000
JJJ	chr11:68358024-68358277(+)$1	253	78	81	9.0000
CCB	chr17:40146828-40147124(-)$1	296	8	11	9.0000
ee[	chr4:80992678-80992947(-)$1	269	4	7	9.0000
dd"	chr12:110770363-110770657(+)$1	294	34	37	9.0000
ggg	chr4:83820752-83821012(-)$1	260	2	5	9.0000
fff	chr11:2972395-2972653(-)$1	258	57	60	9.0000
^^^	chr4:89670033-89670290(-)$1	257	29	32	9.0000
^^^	chr2:135815465-135815787(+)$1	322	55	58	9.0000
:::	chr11:93466132-93466435(-)$1	303	36	39	9.0000
:::	chr7:77236433-77236688(+)$1	255	44	47	9.0000
e44	chr6:4061810-4062086(+)$1	276	74	77	9.0000
:FF	chr16:255896-256145(-)$1	249	10	13	9.0000
:ee	chr8:42251603-42251854(+)$1	251	9	12	9.0000
eee	chr10:5947870-5948119(+)$1	249	31	34	9.0000
ooo	chr7:131099352-131099608(+)$1	256	113	116	9.0000
###	chr18:33720983-33721226(+)$1	243	39	42	9.0000
D{F	chr17:73142616-73142893(-)$1	277	12	15	9.0000
JJJ	chr1:52215677-52215953(+)$1	276	48	51	9.0000
:::	chr6:13617888-13618148(+)$1	260	54	57	9.0000
fff	chr3:180325825-180326084(+)$1	259	52	55	9.0000
ooo	chr15:79172748-79172989(+)$1	241	127	130	9.0000
CCM	chr12:123665593-123665869(-)$1	276	5	8	9.0000
$$$	chr5:33448531-33448772(+)$1	241	140	143	9.0000
II:	chr3:25654067-25654304(-)$1	237	19	22	9.0000
#hh	chr17:62499847-62500121(-)$1	274	12	15	9.0000
""b	chr3:156869897-156870154(-)$1	257	19	22	9.0000
[bb	chr6:41904971-41905241(-)$1	270	165	168	9.0000
:::	chr5:137902725-137902971(-)$1	246	2	5	9.0000
HHH	chr1:205057808-205058066(-)$1	258	65	68	9.0000
!bb	chr15:79178427-79178686(+)$1	259	12	15	9.0000
cc&	chr15:69075187-69075429(-)$1	242	33	36	9.0000
dd:	chr20:33000210-33000464(+)$1	254	134	137	9.0000
nnn	chr12:120109988-120110257(+)$1	269	30	33	9.0000
JJJ	chr14:70237019-70237388(+)$1	369	0	3	9.0000
DD:	chr3:20016959-20017235(+)$1	276	3	6	9.0000
{BB	chr1:52212267-52212569(+)$1	302	11	14	9.0000
YCC	chrX:135958522-135958767(-)$1	245	145	148	9.0000
qqq	chr15:101826960-101827230(-)$1	270	50	53	9.0000
+++	chr3:50099262-50099539(+)$1	277	94	97	9.0000
::f	chr5:175782605-175782861(-)$1	256	12	15	9.0000
ccc	chr2:38536378-38536673(-)$1	295	169	172	9.0000
!aq	chr12:98987419-98987710(+)$1	291	14	17	9.0000
ggg	chr1:24304648-24304876(-)$1	228	40	43	9.0000
]cc	chr15:55483119-55483361(-)$1	242	27	30	9.0000
888	chr12:7031345-7031609(+)$1	264	204	207	9.0000
ccp	chr6:91260111-91260385(-)$1	274	20	23	9.0000
###	chr7:30639455-30639686(+)$1	231	103	106	9.0000
&&&	chr8:124796572-124796848(+)$1	276	227	230	9.0000
:::	chr1:46124687-46124932(-)$1	245	1	4	9.0000
ggg	chr15:40329108-40329321(-)$1	213	194	197	9.0000
eee	chr16:66858633-66858900(-)$1	267	2	5	9.0000
eel	chr7:104681151-104681404(+)$1	253	130	133	9.0000
ff:	chr11:62609007-62609214(-)$1	207	15	18	9.0000
===	chr1:46078714-46078980(+)$1	266	201	204	9.0000
g##	chr15:40990800-40991172(+)$1	372	19	22	9.0000
DD:	chr1:249151733-249152032(-)$1	299	52	55	9.0000
HH:	chr9:134107590-134107822(+)$1	232	6	9	9.0000
hhd	chr3:50140373-50140636(+)$1	263	94	97	9.0000
DNN	chr12:72004742-72004985(-)$1	243	7	10	9.0000
F}C	chr17:37590458-37590706(-)$1	248	201	204	9.0000
:::	chr18:2752360-2752595(+)$1	235	25	28	9.0000
B::	chr1:24297887-24298134(-)$1	247	62	65	9.0000
:cc	chr1:76255709-76255967(+)$1	258	209	212	9.0000
ddd	chr6:4064918-4065180(+)$1	262	20	23	9.0000
DD:	chr3:195791070-195791296(-)$1	226	65	68	9.0000
:::	chr7:56169424-56169677(-)$1	253	3	6	9.0000
mmm	chr2:177195175-177195437(+)$1	262	60	63	9.0000
qqq	chr17:43182840-43183113(+)$1	273	31	34	9.0000
:::	chrX:135954318-135954636(-)$1	318	4	7	9.0000
HLL	chr1:224492673-224492975(-)$1	302	26	29	9.0000
ddd	chr2:70454729-70454999(-)$1	270	86	89	9.0000
33g	chr16:74682970-74683273(-)$1	303	52	55	9.0000
CCC	chr10:70520848-70521068(+)$1	220	16	19	9.0000
:ee	chr4:48533032-48533291(-)$1	259	23	26	9.0000
CC:	chr1:29485878-29486110(-)$1	232	165	168	9.0000
bb[	chr6:43594517-43594826(-)$1	309	6	9	9.0000
CCC	chr6:35856579-35856816(-)$1	237	189	192	9.0000
frr	chr6:32943001-32943264(+)$1	263	7	10	9.0000
ccc	chr14:53175052-53175353(+)$1	301	38	41	9.0000
G{D	chr11:61732278-61732524(-)$1	246	34	37	9.0000
eee	chr17:74732037-74732299(-)$1	262	84	87	9.0000
:::	chr8:61531039-61531321(+)$1	282	111	114	9.0000
:::	chr16:56970488-56970732(+)$1	244	30	33	9.0000
:::	chr6:26138169-26138426(+)$1	257	213	216	9.0000
dd:	chr5:10254108-10254415(+)$1	307	43	46	9.0000
d[e	chr16:66857085-66857329(-)$1	244	139	142	9.0000
EEE	chr6:10894334-10894620(+)$1	286	266	269	9.0000
^^^	chr19:8553443-8553708(+)$1	265	85	88	9.0000
b[b	chr2:70516320-70516639(-)$1	319	143	146	9.0000
ooo	chr3:197023927-197024226(-)$1	299	78	81	9.0000
E{D	chr4:113565722-113566004(+)$1	282	17	20	9.0000
ooo	chrX:12994157-12994406(+)$1	249	154	157	9.0000
fff	chr3:195789623-195789907(-)$1	284	212	215	9.0000

#DB
...	chrX:135961350-135961599(-)$1	1	11	14	9.0000
)))	chr18:9594805-9595154(-)$1	1	18	21	9.0000
...	chr16:66851256-66851498(-)$1	1	54	57	9.0000
...	chr5:140048494-140048738(+)$1	1	7	10	9.0000
.((	chr2:100037989-100038271(-)$1	1	94	97	9.0000
(((	chr11:68358024-68358277(+)$1	1	78	81	9.0000
(((	chr17:40146828-40147124(-)$1	1	8	11	9.0000
((.	chr4:80992678-80992947(-)$1	1	4	7	9.0000
((.	chr12:110770363-110770657(+)$1	1	34	37	9.0000
(((	chr4:83820752-83821012(-)$1	1	2	5	9.0000
(((	chr11:2972395-2972653(-)$1	1	57	60	9.0000
...	chr4:89670033-89670290(-)$1	1	29	32	9.0000
...	chr2:135815465-135815787(+)$1	1	55	58	9.0000
...	chr11:93466132-93466435(-)$1	1	36	39	9.0000
...	chr7:77236433-77236688(+)$1	1	44	47	9.0000
)..	chr6:4061810-4062086(+)$1	1	74	77	9.0000
.((	chr16:255896-256145(-)$1	1	10	13	9.0000
.((	chr8:42251603-42251854(+)$1	1	9	12	9.0000
(((	chr10:5947870-5948119(+)$1	1	31	34	9.0000
...	chr7:131099352-131099608(+)$1	1	113	116	9.0000
...	chr18:33720983-33721226(+)$1	1	39	42	9.0000
(.(	chr17:73142616-73142893(-)$1	1	12	15	9.0000
(((	chr1:52215677-52215953(+)$1	1	48	51	9.0000
...	chr6:13617888-13618148(+)$1	1	54	57	9.0000
(((	chr3:180325825-180326084(+)$1	1	52	55	9.0000
...	chr15:79172748-79172989(+)$1	1	127	130	9.0000
((.	chr12:123665593-123665869(-)$1	1	5	8	9.0000
...	chr5:33448531-33448772(+)$1	1	140	143	9.0000
((.	chr3:25654067-25654304(-)$1	1	19	22	9.0000
.((	chr17:62499847-62500121(-)$1	1	12	15	9.0000
..(	chr3:156869897-156870154(-)$1	1	19	22	9.0000
.((	chr6:41904971-41905241(-)$1	1	165	168	9.0000
...	chr5:137902725-137902971(-)$1	1	2	5	9.0000
)))	chr1:205057808-205058066(-)$1	1	65	68	9.0000
.((	chr15:79178427-79178686(+)$1	1	12	15	9.0000
((.	chr15:69075187-69075429(-)$1	1	33	36	9.0000
)).	chr20:33000210-33000464(+)$1	1	134	137	9.0000
...	chr12:120109988-120110257(+)$1	1	30	33	9.0000
(((	chr14:70237019-70237388(+)$1	1	0	3	9.0000
((.	chr3:20016959-20017235(+)$1	1	3	6	9.0000
.((	chr1:52212267-52212569(+)$1	1	11	14	9.0000
.))	chrX:135958522-135958767(-)$1	1	145	148	9.0000
...	chr15:101826960-101827230(-)$1	1	50	53	9.0000
...	chr3:50099262-50099539(+)$1	1	94	97	9.0000
..(	chr5:175782605-175782861(-)$1	1	12	15	9.0000
(((	chr2:38536378-38536673(-)$1	1	169	172	9.0000
.(.	chr12:98987419-98987710(+)$1	1	14	17	9.0000
)))	chr1:24304648-24304876(-)$1	1	40	43	9.0000
.))	chr15:55483119-55483361(-)$1	1	27	30	9.0000
...	chr12:7031345-7031609(+)$1	1	204	207	9.0000
((.	chr6:91260111-91260385(-)$1	1	20	23	9.0000
...	chr7:30639455-30639686(+)$1	1	103	106	9.0000
...	chr8:124796572-124796848(+)$1	1	227	230	9.0000
...	chr1:46124687-46124932(-)$1	1	1	4	9.0000
)))	chr15:40329108-40329321(-)$1	1	194	197	9.0000
(((	chr16:66858633-66858900(-)$1	1	2	5	9.0000
((.	chr7:104681151-104681404(+)$1	1	130	133	9.0000
)).	chr11:62609007-62609214(-)$1	1	15	18	9.0000
(((	chr1:46078714-46078980(+)$1	1	201	204	9.0000
(..	chr15:40990800-40991172(+)$1	1	19	22	9.0000
((.	chr1:249151733-249152032(-)$1	1	52	55	9.0000
((.	chr9:134107590-134107822(+)$1	1	6	9	9.0000
)))	chr3:50140373-50140636(+)$1	1	94	97	9.0000
(..	chr12:72004742-72004985(-)$1	1	7	10	9.0000
).)	chr17:37590458-37590706(-)$1	1	201	204	9.0000
...	chr18:2752360-2752595(+)$1	1	25	28	9.0000
(..	chr1:24297887-24298134(-)$1	1	62	65	9.0000
.((	chr1:76255709-76255967(+)$1	1	209	212	9.0000
)))	chr6:4064918-4065180(+)$1	1	20	23	9.0000
((.	chr3:195791070-195791296(-)$1	1	65	68	9.0000
...	chr7:56169424-56169677(-)$1	1	3	6	9.0000
...	chr2:177195175-177195437(+)$1	1	60	63	9.0000
...	chr17:43182840-43183113(+)$1	1	31	34	9.0000
...	chrX:135954318-135954636(-)$1	1	4	7	9.0000
(..	chr1:224492673-224492975(-)$1	1	26	29	9.0000
)))	chr2:70454729-70454999(-)$1	1	86	89	9.0000
..)	chr16:74682970-74683273(-)$1	1	52	55	9.0000
(((	chr10:70520848-70521068(+)$1	1	16	19	9.0000
.((	chr4:48533032-48533291(-)$1	1	23	26	9.0000
)).	chr1:29485878-29486110(-)$1	1	165	168	9.0000
((.	chr6:43594517-43594826(-)$1	1	6	9	9.0000
)))	chr6:35856579-35856816(-)$1	1	189	192	9.0000
(..	chr6:32943001-32943264(+)$1	1	7	10	9.0000
(((	chr14:53175052-53175353(+)$1	1	38	41	9.0000
(.(	chr11:61732278-61732524(-)$1	1	34	37	9.0000
)))	chr17:74732037-74732299(-)$1	1	84	87	9.0000
...	chr8:61531039-61531321(+)$1	1	111	114	9.0000
...	chr16:56970488-56970732(+)$1	1	30	33	9.0000
...	chr6:26138169-26138426(+)$1	1	213	216	9.0000
)).	chr5:10254108-10254415(+)$1	1	43	46	9.0000
(.(	chr16:66857085-66857329(-)$1	1	139	142	9.0000
)))	chr6:10894334-10894620(+)$1	1	266	269	9.0000
...	chr19:8553443-8553708(+)$1	1	85	88	9.0000
(.(	chr2:70516320-70516639(-)$1	1	143	146	9.0000
...	chr3:197023927-197024226(-)$1	1	78	81	9.0000
(.(	chr4:113565722-113566004(+)$1	1	17	20	9.0000
...	chrX:12994157-12994406(+)$1	1	154	157	9.0000
(((	chr3:195789623-195789907(-)$1	1	212	215	9.0000

#PSSM
A : 0.94	a : 0.05	
C : 0.94	c : 0.05	
A : 0.94	a : 0.05	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_UTR_m3_run2.nuc.txt

#NT
UAAAAAUUC	chr14:70238190-70238477(+)$1	287	60	69	13.2727
UGAAAUUUG	chr5:137088274-137088556(-)$1	282	179	188	14.8181
UAAAAACUG	chr4:174253071-174253328(-)$1	257	199	208	12.5454
CAAAAUUUG	chr7:155101668-155101913(+)$1	245	161	170	15.0000
UAAACUUUA	chr19:33087836-33088103(-)$1	267	173	182	13.4545
uaauauuug	chr6:43753844-43754101(+)$1	257	172	181	14.8181
UAAAAGUUC	chr14:69254688-69254951(-)$1	263	231	240	13.0909
UAAAAGUGG	chr1:182352941-182353174(-)$1	233	85	94	11.7272
UAUAUUUUG	chr1:145442467-145442716(+)$1	249	76	85	11.9090
UACAAUUUG	chr20:45838945-45839220(-)$1	275	46	55	14.6363
AAAAAUUUA	chr8:101734155-101734404(-)$1	249	205	214	13.0000
UAACAUUUA	chr8:101715364-101715617(-)$1	253	18	27	12.6363
UAAAUAUUG	chr17:56050935-56051185(-)$1	250	10	19	13.0909
UAAAUUUUG	chr4:174252814-174253092(-)$1	278	168	177	16.2727
UAAAAUCUA	chr11:58385122-58385368(+)$1	246	139	148	13.4545
UAUAUUUUG	chr1:145442410-145442667(+)$1	257	133	142	11.9090
UAAAUUUUG	chr4:174252775-174253014(-)$1	239	90	99	16.2727
UAACAuuuc	chr1:205687228-205687520(-)$1	292	267	276	12.1818
UAAAAUAUG	chr19:50886019-50886276(+)$1	257	228	237	15.4545
UAAAUUUUG	chr10:22032241-22032553(+)$1	312	220	229	16.2727
UAAACUUUG	chr17:38544691-38544930(-)$1	239	10	19	15.7272
UGAAAUUUG	chr6:17615407-17615629(-)$1	222	15	24	14.8181
UAAAUUGUG	chr5:151184283-151184535(+)$1	252	1	10	12.8181
AAAAAUUUU	chr5:140895330-140895584(-)$1	254	94	103	12.9090
UAAAUUUUU	chr19:1258684-1258928(+)$1	244	20	29	13.9090
UAAAGUGUG	chr6:31698288-31698539(-)$1	251	190	199	12.1818
UAAAAUUGU	chr3:179342046-179342300(+)$1	254	7	16	12.7272
UUAAAUUUG	chr3:180702226-180702520(-)$1	294	235	244	14.6363
UAAAAAUUG	chr5:89689544-89689837(-)$1	293	186	195	16.0000
UAAAAAUUG	chr22:22114551-22114907(-)$1	356	129	138	16.0000
UAAAAUAUU	chr2:68405914-68406198(-)$1	284	192	201	13.0909
UAAAAGUUU	chr1:162569462-162569710(+)$1	248	79	88	13.4545
UAAAAUUUU	chr18:60997902-60998179(-)$1	277	154	163	16.8181
UAAACUCUG	chr4:78088074-78088336(+)$1	262	0	9	12.2727
UAAAAACUG	chr4:174253018-174253271(-)$1	253	142	151	12.5454
UGAAAUUUG	chr6:17615429-17615677(-)$1	248	63	72	14.8181
UAAAAAUUC	chr14:70238099-70238357(+)$1	258	151	160	13.2727
UAAAUUUUG	chr4:174252911-174253218(-)$1	307	294	303	16.2727
UAAAAUUUG	chr21:44513021-44513263(-)$1	242	175	184	19.1818
AAAAAUUUA	chr8:101734082-101734294(-)$1	212	95	104	13.0000
UAACAUUUU	chr1:25568668-25568964(-)$1	296	36	45	12.5454
UAAAAGCUG	chr22:36677295-36677528(-)$1	233	8	17	12.3636
UAAAAUGAG	chr1:32508369-32508613(+)$1	244	44	53	11.4545
UAUAAUGUG	chr7:127231546-127231814(+)$1	268	161	170	11.3636
CAAAACUUG	chr5:126172502-126172792(+)$1	290	26	35	11.2727
AAAAAUUUA	chr8:101734116-101734344(-)$1	228	145	154	13.0000
UAAAAUUUG	chr21:44512990-44513221(-)$1	231	133	142	19.1818
UAAAAUUGU	chr1:151376538-151376834(-)$1	296	223	232	12.7272
UAAAAUUUA	chr14:56150920-56151169(+)$1	249	219	228	16.9090
uaauauuug	chr6:43753926-43754176(+)$1	250	90	99	14.8181
UAAAGUUUG	chr11:46765052-46765303(-)$1	251	194	203	15.6363
uaaaauuua	chr5:96365744-96365999(+)$1	255	100	109	16.9090
UAAAAUGAG	chr1:32508413-32508627(+)$1	214	0	9	11.4545
UAAAAGUGG	chr1:20978635-20978894(-)$1	259	220	229	11.7272

#otherMatches

#Struct PSSM
:::::::::	chr8:101734057-101734282(-)$1	225	83	92	13.0000
==ppppppp	chr14:70238190-70238477(+)$1	287	60	69	13.2727
d::::::::	chr5:137088274-137088556(-)$1	282	179	188	14.8181
e$$$$$bb[	chr4:174253071-174253328(-)$1	257	199	208	12.5454
::ggggggg	chr7:155101668-155101913(+)$1	245	161	170	15.0000
((((((ggg	chr19:33087836-33088103(-)$1	267	173	182	13.4545
:dddd!!bb	chr6:43753844-43754101(+)$1	257	172	181	14.8181
F}DDDDYYE	chr14:69254688-69254951(-)$1	263	231	240	13.0909
2ffffff44	chr1:182352941-182353174(-)$1	233	85	94	11.7272
qqqqqqqqb	chr1:145442467-145442716(+)$1	249	76	85	11.9090
eeee::bb[	chr20:45838945-45839220(-)$1	275	46	55	14.6363
:::::::::	chr8:101734155-101734404(-)$1	249	205	214	13.0000
vvvvvvvvh	chr8:101715364-101715617(-)$1	253	18	27	12.6363
""eeeee[b	chr17:56050935-56051185(-)$1	250	10	19	13.0909
C~~~~DDDD	chr4:174252814-174253092(-)$1	278	168	177	16.2727
:::::::dd	chr11:58385122-58385368(+)$1	246	139	148	13.4545
ggggggg[b	chr1:145442410-145442667(+)$1	257	133	142	11.9090
[dddd!!bb	chr4:174252775-174253014(-)$1	239	90	99	16.2727
eeeeeJJJJ	chr1:205687228-205687520(-)$1	292	267	276	12.1818
^^^^^^^^^	chr19:50886019-50886276(+)$1	257	228	237	15.4545
ffff^^^^^	chr10:22032241-22032553(+)$1	312	220	229	16.2727
QQQQQQQQB	chr17:38544691-38544930(-)$1	239	10	19	15.7272
eccc[ccc[	chr6:17615407-17615629(-)$1	222	15	24	14.8181
:::::::::	chr5:151184283-151184535(+)$1	252	1	10	12.8181
hmmmmhhhh	chr5:140895330-140895584(-)$1	254	94	103	12.9090
::::GGGGG	chr19:1258684-1258928(+)$1	244	20	29	13.9090
:::::::::	chr6:31698288-31698539(-)$1	251	190	199	12.1818
::::FFFFF	chr3:179342046-179342300(+)$1	254	7	16	12.7272
22hhhhhhh	chr3:180702226-180702520(-)$1	294	235	244	14.6363
::EEEEEZZ	chr5:89689544-89689837(-)$1	293	186	195	16.0000
+++++++++	chr22:22114551-22114907(-)$1	356	129	138	16.0000
]dddd5555	chr2:68405914-68406198(-)$1	284	192	201	13.0909
:::::IIII	chr1:162569462-162569710(+)$1	248	79	88	13.4545
ccc!!ffff	chr18:60997902-60998179(-)$1	277	154	163	16.8181
::::iiiii	chr4:78088074-78088336(+)$1	262	0	9	12.2727
e55555fff	chr4:174253018-174253271(-)$1	253	142	151	12.5454
!eeeeemmm	chr6:17615429-17615677(-)$1	248	63	72	14.8181
==ppppppp	chr14:70238099-70238357(+)$1	258	151	160	13.2727
eeeeeffff	chr4:174252911-174253218(-)$1	307	294	303	16.2727
oooooobb]	chr21:44513021-44513263(-)$1	242	175	184	19.1818
:::::::::	chr8:101734082-101734294(-)$1	212	95	104	13.0000
FFFeeeee!	chr1:25568668-25568964(-)$1	296	36	45	12.5454
:::::FFFF	chr22:36677295-36677528(-)$1	233	8	17	12.3636
hhhoooooo	chr1:32508369-32508613(+)$1	244	44	53	11.4545
iiillliii	chr7:127231546-127231814(+)$1	268	161	170	11.3636
[eeeeelll	chr5:126172502-126172792(+)$1	290	26	35	11.2727
:::::::::	chr8:101734116-101734344(-)$1	228	145	154	13.0000
ee####ddd	chr21:44512990-44513221(-)$1	231	133	142	19.1818
"""bb!!dd	chr1:151376538-151376834(-)$1	296	223	232	12.7272
:::::::gg	chr14:56150920-56151169(+)$1	249	219	228	16.9090
:dddd!!bb	chr6:43753926-43754176(+)$1	250	90	99	14.8181
J::ddddoo	chr11:46765052-46765303(-)$1	251	194	203	15.6363
hhhhhh]cc	chr5:96365744-96365999(+)$1	255	100	109	16.9090
:::HHHHHH	chr1:32508413-32508627(+)$1	214	0	9	11.4545
rrffffffB	chr1:20978635-20978894(-)$1	259	220	229	11.7272

#DB
.........	chr8:101734057-101734282(-)$1	1	83	92	13.0000
((.......	chr14:70238190-70238477(+)$1	1	60	69	13.2727
)........	chr5:137088274-137088556(-)$1	1	179	188	14.8181
(.....((.	chr4:174253071-174253328(-)$1	1	199	208	12.5454
..(((((((	chr7:155101668-155101913(+)$1	1	161	170	15.0000
......(((	chr19:33087836-33088103(-)$1	1	173	182	13.4545
.((((..((	chr6:43753844-43754101(+)$1	1	172	181	14.8181
).))))..)	chr14:69254688-69254951(-)$1	1	231	240	13.0909
.))))))..	chr1:182352941-182353174(-)$1	1	85	94	11.7272
........)	chr1:145442467-145442716(+)$1	1	76	85	11.9090
))))..((.	chr20:45838945-45839220(-)$1	1	46	55	14.6363
.........	chr8:101734155-101734404(-)$1	1	205	214	13.0000
........)	chr8:101715364-101715617(-)$1	1	18	27	12.6363
..(((((.(	chr17:56050935-56051185(-)$1	1	10	19	13.0909
)....))))	chr4:174252814-174253092(-)$1	1	168	177	16.2727
.......((	chr11:58385122-58385368(+)$1	1	139	148	13.4545
(((((((.(	chr1:145442410-145442667(+)$1	1	133	142	11.9090
.((((..((	chr4:174252775-174253014(-)$1	1	90	99	16.2727
)))))))))	chr1:205687228-205687520(-)$1	1	267	276	12.1818
.........	chr19:50886019-50886276(+)$1	1	228	237	15.4545
((((.....	chr10:22032241-22032553(+)$1	1	220	229	16.2727
........(	chr17:38544691-38544930(-)$1	1	10	19	15.7272
((((.(((.	chr6:17615407-17615629(-)$1	1	15	24	14.8181
.........	chr5:151184283-151184535(+)$1	1	1	10	12.8181
(....))))	chr5:140895330-140895584(-)$1	1	94	103	12.9090
....(((((	chr19:1258684-1258928(+)$1	1	20	29	13.9090
.........	chr6:31698288-31698539(-)$1	1	190	199	12.1818
....(((((	chr3:179342046-179342300(+)$1	1	7	16	12.7272
..)))))))	chr3:180702226-180702520(-)$1	1	235	244	14.6363
..)))))..	chr5:89689544-89689837(-)$1	1	186	195	16.0000
.........	chr22:22114551-22114907(-)$1	1	129	138	16.0000
.))))....	chr2:68405914-68406198(-)$1	1	192	201	13.0909
.....((((	chr1:162569462-162569710(+)$1	1	79	88	13.4545
(((..((((	chr18:60997902-60998179(-)$1	1	154	163	16.8181
....(((((	chr4:78088074-78088336(+)$1	1	0	9	12.2727
).....)))	chr4:174253018-174253271(-)$1	1	142	151	12.5454
.(((((...	chr6:17615429-17615677(-)$1	1	63	72	14.8181
((.......	chr14:70238099-70238357(+)$1	1	151	160	13.2727
)))))))))	chr4:174252911-174253218(-)$1	1	294	303	16.2727
......)).	chr21:44513021-44513263(-)$1	1	175	184	19.1818
.........	chr8:101734082-101734294(-)$1	1	95	104	13.0000
((((((((.	chr1:25568668-25568964(-)$1	1	36	45	12.5454
.....((((	chr22:36677295-36677528(-)$1	1	8	17	12.3636
(((......	chr1:32508369-32508613(+)$1	1	44	53	11.4545
(((...)))	chr7:127231546-127231814(+)$1	1	161	170	11.3636
.(((((...	chr5:126172502-126172792(+)$1	1	26	35	11.2727
.........	chr8:101734116-101734344(-)$1	1	145	154	13.0000
((....(((	chr21:44512990-44513221(-)$1	1	133	142	19.1818
...((..((	chr1:151376538-151376834(-)$1	1	223	232	12.7272
.......((	chr14:56150920-56151169(+)$1	1	219	228	16.9090
.((((..((	chr6:43753926-43754176(+)$1	1	90	99	14.8181
)..((((..	chr11:46765052-46765303(-)$1	1	194	203	15.6363
)))))).))	chr5:96365744-96365999(+)$1	1	100	109	16.9090
...((((((	chr1:32508413-32508627(+)$1	1	0	9	11.4545
..)))))))	chr1:20978635-20978894(-)$1	1	220	229	11.7272

#PSSM
U : 0.81	A : 0.09	u : 0.05	C : 0.03	
A : 0.87	G : 0.05	a : 0.05	U : 0.01	
A : 0.87	a : 0.05	U : 0.05	C : 0.01	
A : 0.89	C : 0.05	u : 0.03	a : 0.01	
A : 0.69	U : 0.16	C : 0.05	a : 0.05	G : 0.03	
U : 0.69	A : 0.12	G : 0.09	u : 0.07	C : 0.01	
U : 0.70	C : 0.09	G : 0.09	u : 0.07	A : 0.03	
U : 0.81	u : 0.07	G : 0.07	A : 0.03	
G : 0.58	A : 0.14	U : 0.14	C : 0.05	g : 0.03	c : 0.01	a : 0.01	

#score	766.6363636363641
#seq	55
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_transcript_m2_run1.nuc.txt

#NT
ucaaaugaucuuccugugucagccucccaaagugcuguaguuacaggcaugagcca	chr7:101581541-101581867(+)$1	326	77	133	80.4657
ucacgccauucuucugccucagccucccgaguagcugggacuacaggcgcccaccg	chr16:21873000-21873283(-)$1	283	4	60	83.4109
ucaagugaucugcucgccucagccucccaaaguggugggauuguaggcgugagcca	chr20:45969095-45969343(-)$1	248	20	76	85.8767
ugaagcauuccuccugcuucagccugcugaguaacugggaccacaggcacaugcca	chr16:68231170-68231449(+)$1	279	113	169	73.0684
ucaagcgauccucgggguucagccucccaaguaacugggauuacaggugcaugcca	chr10:102117675-102117929(+)$1	254	178	234	87.2465
ucaugcaguccuccugccauggccuccugaguaguugggacuagaggugcacacca	chr17:74058357-74058632(-)$1	275	175	231	72.5890
ucuagcaguccucccaccucggucucccagaauguuggaauuacaggcaggagcca	chr16:548618-548847(+)$1	229	118	174	76.1506
ucaagugauccuccugccucagccucccaaguagcugggauuacaggugagcacca	chr22:20808240-20808549(-)$1	309	13	69	104.0273
ccucaugaucugcccuccucggccucccaaagugcuggaauuacaggugugagcua	chr4:145975213-145975490(-)$1	277	1	57	74.4383
uuaaaugauccucccaucucagcuucccgaguagcugggacuacaggugugagcca	chr11:125510375-125510667(+)$1	292	186	242	90.5342
ucaagccaucuucccaugucagccuccugaguagcuaggauuacaggugcgugcca	chr12:63172361-63172648(-)$1	287	17	73	85.4657
ucaagcaaucuuccggccucagccuucugaguagcugggacuacagguacauacca	chr5:56486445-56486694(+)$1	249	185	241	85.4657
ugaagugauccuccuaccuuagccucuugaguagcugggacaacaggugcaugcua	chr7:138163136-138163379(+)$1	243	182	238	79.2328
ucaagcaguucucgugccuuggccucccgaguagcucggacuacaagugcaugcca	chr22:28924350-28924653(-)$1	303	9	65	78.6164
ucaagcaguccucccaccucagucucuuaaguagcugggauuacaagugugcgccc	chr20:3899486-3899713(+)$1	227	164	220	85.5342
ucaagccauccuccuaccccaaccucccaaagugcugggauuacaggugugagcca	chr14:36237443-36237695(-)$1	252	14	70	96.0136
ucaggugauuuuucugccucagccuccugaguaacugggauuacaggcauguacca	chr16:11936034-11936290(-)$1	256	186	242	85.4657
ucaagugguucuccugccucagccucccaaguagcugggauuucagguacccgcua	chr17:79967877-79968147(+)$1	270	5	61	89.8493
ucgaaugagucuccugacucagucucccaaguagcugggaauacaggcaugugcca	chr1:151173909-151174159(+)$1	250	13	69	82.0410
ucaagcaauucuucugccucagccuccugaguagcugggauuacaggugacccgcc	chr1:1805003-1805262(-)$1	259	85	141	79.9863
ccucgugauccacccagcucaaccucccaaagugcugggauuacaugcgugggcca	chr5:138927006-138927254(+)$1	248	24	80	78.4794
ucaagcaguccucccaucucagccucccaaagugcugggauuacaggcaugagcua	chr4:39621479-39621766(-)$1	287	20	76	95.6027
ucaagugauccucccaccucagccucccaaguagcuggcacuacaggcaugcacca	chr19:10274944-10275222(-)$1	278	13	69	100.1917
ucaagcgauucuccugccccagccucccaguuagcugggauuacaggugcccacca	chr8:42770487-42770735(+)$1	248	184	240	88.8219
gugaucaauccuccagccucagccucccaaagugcugcgaucacaggugugagcca	chr21:45150797-45151115(+)$1	318	151	207	80.2602
ucaagcagucuuccugcgucagucuccugaguagcugggaccacaggugcaugccu	chr16:15977066-15977324(-)$1	258	184	240	76.0821
cuucaugauccacccaccucagccucccaaagugcagggauuacaggcaugagcca	chr2:192237806-192238095(+)$1	289	1	57	80.3287
uuaagcagucuucucaccucagccucccaaguagcuaggacuacagauccaugcca	chr2:26491982-26492255(+)$1	273	177	233	77.5205
ucaggugaucugcccaccucagccucccaaaguacuaggauuauagguguaagcca	chr11:47571581-47571878(-)$1	297	10	66	84.2328
ucaagagauccucccgccucagccuuacaaguagcugggacuauagguacacguca	chr19:50024411-50024625(+)$1	214	1	57	83.7534
ucaggugauucucccaccucagccucccaaguggcuggaacuacaggugugcacca	chr11:66400606-66400859(+)$1	253	179	235	93.1369
uccggagauccacccauguuggccucccaaagugcugggauuacaggguugagcca	chr7:105186358-105186668(+)$1	310	149	205	78.5479
uccaccaguccgcccgccuuggccucccaaaguggugggguuauaggcaugaggca	chr2:70447955-70448231(-)$1	276	148	204	71.1506
acaagcauucuucucacuuaggccucccaaagugcuggaauuacuggcgugaacca	chr1:8652561-8652819(-)$1	258	93	149	71.4246
ucaagccguccuccuaccuuagccucccagagugcugggguuacagguuugaccca	chr16:50204929-50205181(+)$1	252	10	66	85.4657
acaagcgauccaccugccucggccucccaaagugcugggaugacaggcaucagccg	chr11:68159386-68159677(+)$1	291	162	218	86.8356
ucaagugauucuugugccucagccgcccgaguagcugggauuacaggugugcacca	chr7:102018688-102018941(+)$1	253	19	75	90.4657
ucaagcaauucuugugccucagccucccgaguagcugggauuacaggcacgugccg	chr14:68503810-68504108(+)$1	298	224	280	89.8493
ccuugugauccaccuaucucagccucccaaagugcugggauuacaggcaugagcca	chr19:23550913-23551158(-)$1	245	59	115	89.0273
ucaagugauccucccaccucagccucccaaguagcuggcacuacaggcaugcacca	chr19:10275131-10275392(-)$1	261	183	239	100.1917
ucaagcaguucucccaccucagccucuugaguagcugggacuacagguggaugcca	chr16:81628906-81629154(+)$1	248	184	240	87.3150
ucaggugauccucccaccucagccucccaaguaguugggaccacagguacaugcca	chr7:99074877-99075126(+)$1	249	183	239	91.5616
ucaagcaguucuccugccuuggccucccaaguagcugggauuacaggcgugcgcca	chr17:76191512-76191736(+)$1	224	168	224	98.8219
ucaagaguuccucuugccuuggccucccacaguacugggauuauagaugugaguca	chr19:12394525-12394780(-)$1	255	165	221	73.0684
ucacgugauccaccucccucagccucccaaaguacugggauuacaagcgugagcca	chr6:41896862-41897142(+)$1	280	9	65	91.1506
ucaggcaauccaccagccucagccucccaaguagcugggauuacaggcauguguca	chr3:50133934-50134203(+)$1	269	186	242	95.1232
ucaggugaucugccugccucggccucccaaagugcuaggauuacaggcgugagccc	chr17:1655581-1655830(+)$1	249	0	56	88.6849
ucaagcugucaucccuccucggccucccaaggugcugagauuacaggugugaguca	chr20:62349888-62350100(+)$1	212	151	207	86.5616
ucaagcaauccuacugucuuggccucccaaagugucaugguuauaggcaugagcca	chr10:34737413-34737666(-)$1	253	153	209	68.8219
ucaagcaauccgcgcaccucggcuucccagagugcugagauuacaggugugagcca	chr9:127481878-127482140(-)$1	262	157	213	84.7808
ucaagagauccucccacgugagccuccugaguagcugggacugcaggcuugcacca	chr12:80074744-80074998(-)$1	254	183	239	83.9589
ucaagugauucuccugccucagccuccagaguagcugggauuacaggugccugcca	chr10:104496094-104496348(+)$1	254	16	72	96.9041
ucaagugacccuuucaccucagccuucugaguagcugagauuacaugcacgcacca	chr17:64209861-64210109(-)$1	248	133	189	74.3013
ucaagcaauccuccugccucagccuccugaauaguuggaaccacagaggcaugcua	chr8:22240171-22240389(+)$1	218	153	209	75.3287
ucaagcgauccacccaccucagccucccaaaguguuggguuuacaugcaugagcca	chr20:30960720-30960983(+)$1	263	91	147	91.4931
ucaagcaauucuccugccucagccuccugaguagcugggaucacaggcgugcaccc	chr21:9945574-9945839(-)$1	265	178	234	91.4931
ucaugugauccaccugccuuggccucccaaagugcugggauuacaggugugagcca	chr20:30967090-30967398(+)$1	308	152	208	96.9726
ucaagugauccucccaccuuggccucccaaagcacugggauuacagguaugagcca	chr19:13191121-13191429(+)$1	308	149	205	96.1506
ucgcaugaucccccagccuuggccucucaaagugcugagacuacaggcauaagcca	chr9:15296619-15296899(-)$1	280	12	68	73.9589
ccucaugauccauccaccucagccuccgaaagugcugggauuacaggcgugagcca	chr3:57881283-57881555(+)$1	272	9	65	82.4520
ucaaaugauccucuugucuuggccucccaaauuggcaggauuacaggagugagaca	chr2:72851487-72851795(-)$1	308	140	196	73.8219
ucaagugauucuccugccucagccucccgaguaggugagacuacaggugugcacca	chr5:130614384-130614641(+)$1	257	190	246	93.4794
ucaagcaauucucaugccucagccucuccaguagcugggacuacaggcgccugcca	chr16:89830473-89830738(-)$1	265	168	224	88.4794
ucaagugaucugucugccuuggucucccaaagugcuggguuuacaggcguaagcca	chr17:74325416-74325714(-)$1	298	113	169	82.5890
uugagugauccucccacuguagccuccugaguaggugggacuacaggugugugcca	chr20:43559707-43560000(+)$1	293	207	263	79.7123
uuaagcgaucugcccgccucagccucccaaagugcugggauuacaggugugagcca	chr14:103078619-103078862(+)$1	243	148	204	98.1369
ucaggcaguugucccaccucagccucccaaguagcugggaccagaggcaugcacAU	chr4:773495-773746(-)$1	251	185	241	74.7808
ucaagugaucgucccaccucagccucccaaguaccugggacuacaggcacacacca	chr7:35879743-35880023(+)$1	280	222	278	92.2465
ucaagugauccucccaccucagccucccgaguagcugggacuacagacgugcacca	chr9:131627343-131627612(-)$1	269	187	243	99.1643
ucaagcaauucuccugccucagccuccccaguagcugggauuacaggcaucugcca	chr5:74138091-74138348(-)$1	257	182	238	99.2328
ucaggugauucuccugccucagccuccagaguagcuggaacuacaggugggcacaa	chr3:49819382-49819627(-)$1	245	181	237	83.4794
ucaagcaauccucccaucuuggcuucccaaagugcugggauuauaggcaugagcca	chr20:30962007-30962255(+)$1	248	21	77	89.3698

#otherMatches

#Struct PSSM
[dddd!!aooooooa22dddddddd::FFFFFFffffff!!bb!!cccmmmmccc2	chr21:44266670-44266924(-)$1	254	181	237	92.6575
fff!!bb$$$$$ffffff[ddddbbnnnnnbb]dddd4444ffffffbbffffffc	chr7:101581541-101581867(+)$1	326	77	133	80.4657
:::::EEEEEKKEEEEEcccqqqqqqqqccchhhhhhhh%%%%%%ddddnnnnndd	chr16:21873000-21873283(-)$1	283	4	60	83.4109
LDDDD{BBNNNNNFFFFFF{EEEEE:::dddd[ccc[ccc$$$$$ffffffooooo	chr20:45969095-45969343(-)$1	248	20	76	85.8767
c[ccc"""bb[hhhhhhhh[eeeee[bb[===========!!==============	chr16:68231170-68231449(+)$1	279	113	169	73.0684
ggggggg%%%%%%bbccc"""ccceeeeeooooooeeeee55555ccc4444ccc]	chr10:102117675-102117929(+)$1	254	178	234	87.2465
[ddddcccnnnnnccc]dddddddd333dddd:::GGGGGGG::eeeeesssssss	chr17:74058357-74058632(-)$1	275	175	231	72.5890
]bb4444bb]ccc:::::::FFFFFF:eeeee"""eeeee!!eeeee!!cccbbmm	chr16:548618-548847(+)$1	229	118	174	76.1506
JJJJJJJJJ{A{BBKKDDDD{FFFFFFdddddddddddd%%%%%%ffffff[ccc!	chr22:20808240-20808549(-)$1	309	13	69	104.0273
:DDDD==========[a!!===================[iiiiiiiii[=======	chr4:145975213-145975490(-)$1	277	1	57	74.4383
e"""cccpppppppccc333eeeee::::::hhhhhhhh!!bb!!cccmmmmccc2	chr11:125510375-125510667(+)$1	292	186	242	90.5342
EKKCCCA:::::::::::ddddmmmmdddd:eeeee[bb####bbddddnnnnndd	chr12:63172361-63172648(-)$1	287	17	73	85.4657
2bbeeeee::gggggggeeeeemmmmeeeee22ggggggg:::::cccmmmmcccC	chr5:56486445-56486694(+)$1	249	185	241	85.4657
======IIIIIIIII}HHHHHHHHCCC}DDDD}CCC:::::::::ddddnnnnndd	chr7:138163136-138163379(+)$1	243	182	238	79.2328
'''''''bb"""eeeeedddd$$$$$eeeeellleeeee4444dddd]eeeee22b	chr22:28924350-28924653(-)$1	303	9	65	78.6164
vvvvvvvvvvvvddddDDDD~~~~HHHHHHHHYYBBYYCCC~~~~FFFFFF~~~~F	chr20:3899486-3899713(+)$1	227	164	220	85.5342
IIIIIKKCCC{DDDDMMMMBB{DDDDDDDD{JJJJJJJJJJ::::gggggggmmmm	chr14:36237443-36237695(-)$1	252	14	70	96.0136
e[ddddbbmmmmbb]dddd]eeeee333ddddggggggg%%%%%%bboooooobb6	chr16:11936034-11936290(-)$1	256	186	242	85.4657
:::eeeee####dddd[ffffff!!ammmma22ffffff4444dddd333eeeee:	chr17:79967877-79968147(+)$1	270	5	61	89.8493
::bb[ffffffmmmmffffff]bbeeeeeooooooeeeee:::hhhhhhhhooooo	chr1:151173909-151174159(+)$1	250	13	69	82.0410
d"""cccpppppppccc333dddd]bb]ccc22bb]ccc]eeeee]dddddddd!!	chr1:1805003-1805262(-)$1	259	85	141	79.9863
dd::eeeee"""ffffffxxxxxxxxxxxxxxxffffffeeeee::ffffffmmmm	chr5:138927006-138927254(+)$1	248	24	80	78.4794
hhhhh!!ccc[ffffff[iiiiiiiii%%%%%%==========[ggggggg[====	chr4:39621479-39621766(-)$1	287	20	76	95.6027
DDD{GGGGGGG{JJJJJJJJJJKKGGGGGGGKKEEEEE::::::ffffff[bbooo	chr19:10274944-10275222(-)$1	278	13	69	100.1917
vvvvvvvvvvvvdddd:ffffffssssssssssffffff::::::ddddnnnnndd	chr8:42770487-42770735(+)$1	248	184	240	88.8219
b[bbmmmmbbbb22dddd]ccc55555cccEEEEEffffff!!iiiiiiiii%%%%	chr21:45150797-45151115(+)$1	318	151	207	80.2602
hhh:ddddnnnnndddd:ddddmmmmdddd:hhhhhhhh$$$$$ddddmmmmdddd	chr16:15977066-15977324(-)$1	258	184	240	76.0821
:::::::::::::::::::FFFFFFcccqqqqqqqqccc::hhhhhhhh"""dddd	chr2:192237806-192238095(+)$1	289	1	57	80.3287
5555bbbb333bb]dddd]a]bbccc[ddddhhhhhhhh%%%%%%aqqqqqqqqa6	chr2:26491982-26492255(+)$1	273	177	233	77.5205
JJKKJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ{BB{JJJJJJJJJJJJJ::::ee	chr11:47571581-47571878(-)$1	297	10	66	84.2328
CCMMMMEEEEE{BB{JJJJJJJJJJKKCCCBB{GGGGGGG{GGGGGGGMMMMEEEE	chr19:50024411-50024625(+)$1	214	1	57	83.7534
D:eeeeepppppppeeeeeeeeeeqqqqqqqqeeeee::::::::ffffffooooo	chr11:66400606-66400859(+)$1	253	179	235	93.1369
qqqdddd666666ccc22ffffffeeeeeooooooeeeee::BBYYBB}CCCCCC}	chr7:105186358-105186668(+)$1	310	149	205	78.5479
oooodddd:::cccaddddgggggggccclllccc]ggggggg]dddd22a]ccc:	chr2:70447955-70448231(-)$1	276	148	204	71.1506
::::::::ccc[ccc[ccc[==================[eeeee[ggggggg[hhh	chr1:8652561-8652819(-)$1	258	93	149	71.4246
gggggg!!ggggggg[==================[=============[ccc''''	chr16:50204929-50205181(+)$1	252	10	66	85.4657
g22bb]ccc]ffffff4444eeeee::bb!!a[dddda!!dddd[cccmmmmcccd	chr11:68159386-68159677(+)$1	291	162	218	86.8356
[ddddnnnnndddd]dddd:::::bb!!ffffffeeeee%%%%%%cccmmmmccc6	chr7:102018688-102018941(+)$1	253	19	75	90.4657
3bbeeeee:::::::::cccqqqqqqqqccchhhhhhhh%%%%%%cccmmmmccc6	chr14:68503810-68504108(+)$1	298	224	280	89.8493
=======================================$$$$$dddd[a[dddd[	chr19:23550913-23551158(-)$1	245	59	115	89.0273
2bbcccffffff:::::::dddd!!ammmma22ddddCCCYYGGGGGGG}CCC___	chr19:10275131-10275392(-)$1	261	183	239	100.1917
rrrrdddd:::eeeeeaeeeeemmmmeeeee22a]eeeee:::::eeeeellleee	chr16:81628906-81629154(+)$1	248	184	240	87.3150
e[eeeeepppppppeeeee]eeeeeeeeeemmmmeeeee::::::cccmmmmccc:	chr7:99074877-99075126(+)$1	249	183	239	91.5616
]dddd]ccc]dddd]ddddcccmmmmcccDDDDYYEEEEEZZZAEEEEE}CCC:::	chr17:76191512-76191736(+)$1	224	168	224	98.8219
[fffffflllffffff4444ddddeeeeeooooooeeeee:::::::DDDD}BBCC	chr19:12394525-12394780(-)$1	255	165	221	73.0684
EEE{BB::::::ccc[ccc!!bb[iiiiiiiii[===========[a!!bb[gggg	chr6:41896862-41897142(+)$1	280	9	65	91.1506
d[ddddrrrrrrrrrdddd]ddddeeeeeooooooeeeee::CCCYYFFFFFF~~~	chr3:50133934-50134203(+)$1	269	186	242	95.1232
:BB{FFFFFF:eeeeeccc[cccbbnnnnnbb]cccccc4444eeeeeccc[cccr	chr17:1655581-1655830(+)$1	249	0	56	88.6849
CCC:dddddddd[ccc[ffffff!!bblllbb]ffffff55555ccc]dddd4444	chr20:62349888-62350100(+)$1	212	151	207	86.5616
g22eeeee4444hhhhhhhh]bb::::::::DDDDDDDDYYBB}CCCZZZCCC}CC	chr10:34737413-34737666(-)$1	253	153	209	68.8219
b22ggggggg:DDDD}CCC?????FFFFFFYYDDDDFFFFFFYYEEEEE}CCCYYE	chr9:127481878-127482140(-)$1	262	157	213	84.7808
f::IIIIIIIII:::::hhhhhhhh$$$$$ddddooooooddddhhhhhhhh::::	chr12:80074744-80074998(-)$1	254	183	239	83.9589
HAKKDDDD:::::::JJJJJJJJJJ::eeeeeggggggg####bbddddnnnnndd	chr10:104496094-104496348(+)$1	254	16	72	96.9041
444eeeee]dddd::::eeeeemmmmeeeeeffffff[bb"""ddddsssssssss	chr17:64209861-64210109(-)$1	248	133	189	74.3013
::::::::ccc!!ccc!!ddddmmmmdddd]ccc22ccc::::DDDDffffffmmm	chr8:22240171-22240389(+)$1	218	153	209	75.3287
fffff[ccc[==========[==================[eeeee[bb[hhhhhhh	chr20:30960720-30960983(+)$1	263	91	147	91.4931
vvvvvvvvvvvvdddd:eeeeemmmmeeeeeJJJJJJJJJJJJZZZBB}EEEEEBB	chr21:9945574-9945839(-)$1	265	178	234	91.4931
]cccddddddddadddd===================================[===	chr20:30967090-30967398(+)$1	308	152	208	96.9726
eemmmmeeeee:::::================[bb[====================	chr19:13191121-13191429(+)$1	308	149	205	96.1506
ddd!!ddddeeeee[======================[bb[iiiiiiiii[fffff	chr9:15296619-15296899(-)$1	280	12	68	73.9589
!bb!!ffffff[ccc!!==========[============================	chr3:57881283-57881555(+)$1	272	9	65	82.4520
dddd22dddd]eeeee4444ccc4444ccc22============ccc[eeeee[ii	chr2:72851487-72851795(-)$1	308	140	196	73.8219
]dddd]ffffff:EEEEE::bb[cccbbnnnnnbb]ccc]bb:::ffffffooooo	chr5:130614384-130614641(+)$1	257	190	246	93.4794
::::cccpppppppcccffffff!!ammmma22ffffff::::::cccmmmmccc:	chr16:89830473-89830738(-)$1	265	168	224	88.4794
ggg:EEEEEYYBBYYCCC}BBZZZEEEEEZZZGGGGGGG:JJJJJJJJJJ{GGGGG	chr17:74325416-74325714(-)$1	298	113	169	82.5890
[bb[ccc"""a[a[ccceeeeeccccccmmmmccc]ccc]eeeee]ccc]a]a]cc	chr20:43559707-43560000(+)$1	293	207	263	79.7123
d:::cccpppppppccc:DDDDBBeeeeeooooooeeeee:::::ffffffooooo	chr14:103078619-103078862(+)$1	243	148	204	98.1369
~~~BBHHHHHHHHZZZDDDDZZZFFFFFFYYBBFFFFFF}BB:::ccc[bbooooo	chr4:773495-773746(-)$1	251	185	241	74.7808
cc::cccpppppppccc::DDDD:eeeeeooooooeeeee:::::EEEEE}BBYYB	chr7:35879743-35880023(+)$1	280	222	278	92.2465
e]dddd]bb]a]ddddbb]dddd4444hhhhhhhh]ccc]eeeeebb[cccooooo	chr9:131627343-131627612(-)$1	269	187	243	99.1643
e"""cccpppppppccc333eeeee:eeeeellleeeee::::gggggggqqqqqq	chr5:74138091-74138348(-)$1	257	182	238	99.2328
]cccdddd4444cccdddd$$$$$eeeeennnnneeeee55555ddddffffffmm	chr3:49819382-49819627(-)$1	245	181	237	83.4794
GGGGG:ffffff!!ccc[ddddmmmmdddd]ccc22ffffff:::::::hhhhhhh	chr20:30962007-30962255(+)$1	248	21	77	89.3698

#DB
.((((..(......)..))))))))..))))))((((((..((..(((....))).	chr21:44266670-44266924(-)$1	1	181	237	92.6575
(((..((.....((((((.((((((.....)).))))....)))))))))))))))	chr7:101581541-101581867(+)$1	1	77	133	80.4657
.....(((((..((((((((........)))((((((((......((((.....))	chr16:21873000-21873283(-)$1	1	4	60	83.4109
.((((.((.....((((((.(((((...((((.(((.(((.....((((((.....	chr20:45969095-45969343(-)$1	1	20	76	85.8767
(.(((...((.((((((((.(((((.((.(((((((((((..((((((((((((((	chr16:68231170-68231449(+)$1	1	113	169	73.0684
(((((((......(((((...((((((((......))))).....)))....))).	chr10:102117675-102117929(+)$1	1	178	234	87.2465
.(((((((.....))).))))))))...))))...)))))))..(((((.......	chr17:74058357-74058632(-)$1	1	175	231	72.5890
.))....)).))).......)))))).(((((...(((((..(((((..(((((..	chr16:548618-548847(+)$1	1	118	174	76.1506
(((((((((.(.((..((((.((((((((((((((((((......((((((.(((.	chr22:20808240-20808549(-)$1	1	13	69	104.0273
.((((((((((((((.(..(((((((((((((((((((.(((((((((.(((((((	chr4:145975213-145975490(-)$1	1	1	57	74.4383
(...(((.......)))...)))))......((((((((..((..(((....))).	chr11:125510375-125510667(+)$1	1	186	242	90.5342
(..((((...........((((....)))).(((((.((....((((((.....))	chr12:63172361-63172648(-)$1	1	17	73	85.4657
.)))))))..((((((((((((....)))))..))))))).....(((....))))	chr5:56486445-56486694(+)$1	1	185	241	85.4657
))))))))))))))).))))))))))).)))).))).........((((.....))	chr7:138163136-138163379(+)$1	1	182	238	79.2328
.......((...(((((((((.....(((((...)))))....)))).)))))..)	chr22:28924350-28924653(-)$1	1	9	65	78.6164
............))))))))....))))))))..))..)))....))))))....)	chr20:3899486-3899713(+)$1	1	164	220	85.5342
(((((..(((.((((....((.((((((((.((((((((((....(((((((....	chr14:36237443-36237695(-)$1	1	14	70	96.0136
(.((((((....)).)))).)))))...))))(((((((......((......)).	chr16:11936034-11936290(-)$1	1	186	242	85.4657
...(((((....((((.((((((..(....)..))))))....))))...))))).	chr17:79967877-79968147(+)$1	1	5	61	89.8493
..((.((((((....)))))).))(((((......)))))...((((((((.....	chr1:151173909-151174159(+)$1	1	13	69	82.0410
(...(((.......)))...)))).)).)))..)).))).))))).))))((((..	chr1:1805003-1805262(-)$1	1	85	141	79.9863
))..(((((...((((((...............)))))))))))..((((((....	chr5:138927006-138927254(+)$1	1	24	80	78.4794
(((((..(((.((((((.(((((((((......((((((((((.(((((((.((((	chr4:39621479-39621766(-)$1	1	20	76	95.6027
(((.(((((((.((((((((((..(((((((..(((((......((((((.((...	chr19:10274944-10275222(-)$1	1	13	69	100.1917
............)))).((((((..........))))))......((((.....))	chr8:42770487-42770735(+)$1	1	184	240	88.8219
(.((....))))..)))).))).....))))))))((((((..(((((((((....	chr21:45150797-45151115(+)$1	1	151	207	80.2602
))).((((.....)))).((((....)))).((((((((.....((((....))))	chr16:15977066-15977324(-)$1	1	184	240	76.0821
...................(((((((((........)))..((((((((...((((	chr2:192237806-192238095(+)$1	1	1	57	80.3287
....))))...)).)))).).))(((.((((((((((((......(........).	chr2:26491982-26492255(+)$1	1	177	233	77.5205
((..(((((((((((((((((((((((((((((.((.(((((((((((((....((	chr11:47571581-47571878(-)$1	1	10	66	84.2328
((....(((((.((.((((((((((..(((((.(((((((.(((((((....((((	chr19:50024411-50024625(+)$1	1	1	57	83.7534
(.(((((.......)))))(((((........)))))........((((((.....	chr11:66400606-66400859(+)$1	1	179	235	93.1369
...))))......)))..))))))(((((......)))))..))..)).)))))).	chr7:105186358-105186668(+)$1	1	149	205	78.5479
....))))...((((((((((((((((((...))).))))))).))))..).))).	chr2:70447955-70448231(-)$1	1	148	204	71.1506
........(((.(((.(((.((((((((((((((((((.(((((.(((((((.(((	chr1:8652561-8652819(-)$1	1	93	149	71.4246
((((((..(((((((.((((((((((((((((((.(((((((((((((.(((....	chr16:50204929-50205181(+)$1	1	10	66	85.4657
)..)).))).))))))....)))))..((..(.(((((..((((.(((....))))	chr11:68159386-68159677(+)$1	1	162	218	86.8356
.((((.....)))).)))).....((..(((((((((((......(((....))).	chr7:102018688-102018941(+)$1	1	19	75	90.4657
.))))))).........(((........)))((((((((......(((....))).	chr14:68503810-68504108(+)$1	1	224	280	89.8493
(((((((((((((((((((((((((((((((((((((((.....((((.(.((((.	chr19:23550913-23551158(-)$1	1	59	115	89.0273
.))))))))))).......((((..(....)..)))))))..))))))).)))...	chr19:10275131-10275392(-)$1	1	183	239	100.1917
....))))...(((((((((((....)))))..).))))).....(((((...)))	chr16:81628906-81629154(+)$1	1	184	240	87.3150
(.(((((.......))))).)))))(((((....)))))......(((....))).	chr7:99074877-99075126(+)$1	1	183	239	91.5616
.)))).))).)))).))))(((....)))))))..)))))...)))))).)))...	chr17:76191512-76191736(+)$1	1	168	224	98.8219
.((((((...))))))....))))(((((......))))).......)))).))))	chr19:12394525-12394780(-)$1	1	165	221	73.0684
(((.((......(((.(((..((.(((((((((.(((((((((((.(..((.((((	chr6:41896862-41897142(+)$1	1	9	65	91.1506
(.((((.........)))).))))(((((......)))))..)))..))))))...	chr3:50133934-50134203(+)$1	1	186	242	95.1232
.((.((((((.((((((((.(((((.....)).))))))....)))))(((.(((.	chr17:1655581-1655830(+)$1	1	0	56	88.6849
))).((((((((.(((.((((((..((...)).)))))).....))).))))....	chr20:62349888-62350100(+)$1	1	151	207	86.5616
)..)))))....)))))))).))........))))))))..)).)))...))).))	chr10:34737413-34737666(-)$1	1	153	209	68.8219
)..))))))).)))).))).....))))))..))))))))))..))))).)))..)	chr9:127481878-127482140(-)$1	1	157	213	84.7808
)..))))))))).....((((((((.....((((......))))))))))))....	chr12:80074744-80074998(-)$1	1	183	239	83.9589
((..((((.......((((((((((..((((((((((((....((((((.....))	chr10:104496094-104496348(+)$1	1	16	72	96.9041
...))))).))))....(((((....)))))((((((.((...((((.........	chr17:64209861-64210109(-)$1	1	133	189	74.3013
........(((..(((..((((....)))).)))..)))....))))((((((...	chr8:22240171-22240389(+)$1	1	153	209	75.3287
(((((.(((.((((((((((.((((((((((((((((((.(((((.((.(((((((	chr20:30960720-30960983(+)$1	1	91	147	91.4931
............)))).(((((....)))))))))))))))))...)).)))))))	chr21:9945574-9945839(-)$1	1	178	234	91.4931
.))))))))))))))))(((((((((((((((((((((((((((((((((((.(((	chr20:30967090-30967398(+)$1	1	152	208	96.9726
((....))))).....((((((((((((((((.((.((((((((((((((((((((	chr19:13191121-13191429(+)$1	1	149	205	96.1506
(((..(((((((((.((((((((((((((((((((((.((.(((((((((.(((((	chr9:15296619-15296899(-)$1	1	12	68	73.9589
.((..((((((.(((..((((((((((.((((((((((((((((((((((((((((	chr3:57881283-57881555(+)$1	1	9	65	82.4520
))))..)))).)))))....)))....)))..))))))))))))(((.(((((.((	chr2:72851487-72851795(-)$1	1	140	196	73.8219
.)))).)))))).)))))..((.(((((.....)).))).))...((((((.....	chr5:130614384-130614641(+)$1	1	190	246	93.4794
....(((.......)))((((((..(....)..))))))......(((....))).	chr16:89830473-89830738(-)$1	1	168	224	88.4794
))).)))))..))..))).))...)))))...))))))).((((((((((.(((((	chr17:74325416-74325714(-)$1	1	113	169	82.5890
.((.(((...(.(.((((((((((((((....))).))).))))).))).).).))	chr20:43559707-43560000(+)$1	1	207	263	79.7123
)...(((.......))).(((((((((((......))))).....((((((.....	chr14:103078619-103078862(+)$1	1	148	204	98.1369
...))))))))))...))))...))))))..)))))))).))...(((.((.....	chr4:773495-773746(-)$1	1	185	241	74.7808
))..(((.......)))..)))).(((((......))))).....))))).))..)	chr7:35879743-35880023(+)$1	1	222	278	92.2465
).)))).)).).)))))).))))....)))))))).))).)))))((.(((.....	chr9:131627343-131627612(-)$1	1	187	243	99.1643
(...(((.......)))...))))).(((((...)))))....(((((((......	chr5:74138091-74138348(-)$1	1	182	238	99.2328
.)))))))....)))((((.....(((((.....))))).....))))((((((..	chr3:49819382-49819627(-)$1	1	181	237	83.4794
(((((.((((((..(((.((((....)))).)))..)))))).......(((((((	chr20:30962007-30962255(+)$1	1	21	77	89.3698

#PSSM
u : 0.89	c : 0.06	a : 0.02	g : 0.01	
c : 0.89	u : 0.08	g : 0.02	
a : 0.83	u : 0.08	g : 0.05	c : 0.02	
a : 0.73	g : 0.12	c : 0.09	u : 0.04	
g : 0.86	a : 0.10	u : 0.01	c : 0.01	
c : 0.49	u : 0.45	a : 0.05	
g : 0.57	a : 0.35	c : 0.05	u : 0.01	
a : 0.75	g : 0.20	u : 0.04	
u : 0.97	g : 0.01	c : 0.01	
c : 0.73	u : 0.26	
c : 0.78	u : 0.17	g : 0.02	a : 0.01	
u : 0.73	a : 0.13	g : 0.10	c : 0.01	
c : 0.87	u : 0.10	a : 0.01	
c : 0.83	u : 0.08	g : 0.06	a : 0.01	
c : 0.46	u : 0.46	a : 0.04	g : 0.02	
g : 0.52	a : 0.43	u : 0.02	c : 0.01	
c : 0.83	u : 0.12	g : 0.02	a : 0.01	
c : 0.87	g : 0.06	u : 0.05	
u : 0.94	c : 0.02	a : 0.01	g : 0.01	
c : 0.73	u : 0.23	a : 0.01	g : 0.01	
a : 0.71	g : 0.28	
g : 0.97	a : 0.02	
c : 0.93	u : 0.06	
c : 0.95	u : 0.04	
u : 0.98	g : 0.01	
c : 0.94	u : 0.04	g : 0.01	
c : 0.91	u : 0.06	a : 0.01	
c : 0.75	u : 0.20	a : 0.02	g : 0.01	
a : 0.65	g : 0.31	c : 0.02	
a : 0.91	g : 0.06	c : 0.01	
g : 0.54	a : 0.43	u : 0.01	
u : 0.57	g : 0.41	a : 0.01	
a : 0.54	u : 0.42	g : 0.01	c : 0.01	
g : 0.89	a : 0.09	c : 0.01	
c : 0.84	u : 0.08	g : 0.06	
u : 0.95	c : 0.02	a : 0.01	
g : 0.90	a : 0.08	c : 0.01	
g : 0.89	a : 0.06	u : 0.02	c : 0.01	
g : 0.87	a : 0.09	c : 0.02	
a : 0.91	g : 0.05	u : 0.02	
u : 0.64	c : 0.34	a : 0.01	
u : 0.87	c : 0.09	a : 0.01	g : 0.01	
a : 0.95	g : 0.02	u : 0.01	
c : 0.87	u : 0.09	g : 0.02	
a : 0.98	u : 0.01	
g : 0.91	a : 0.04	u : 0.04	
g : 0.94	a : 0.05	
c : 0.49	u : 0.46	g : 0.02	a : 0.01	
g : 0.56	a : 0.38	u : 0.04	c : 0.01	
u : 0.64	c : 0.28	g : 0.04	a : 0.02	
g : 0.67	a : 0.21	c : 0.10	
a : 0.43	c : 0.28	u : 0.26	g : 0.01	
g : 0.71	a : 0.26	c : 0.02	
c : 0.90	u : 0.05	g : 0.02	a : 0.01	
c : 0.90	u : 0.06	A : 0.01	a : 0.01	
a : 0.87	c : 0.05	g : 0.04	u : 0.01	U : 0.01	

#score	6252.904109589059
#seq	73
#width	56
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_transcript_m1_run1.nuc.txt

#NT
UCCUGGGAG	chr7:1063116-1063366(-)$1	250	107	116	12.1639
CCCUGGUGG	chr8:144616894-144617133(-)$1	239	200	209	13.8852
GCCUGGGGG	chr22:48177819-48178052(+)$1	233	81	90	14.4590
CUCUGGGUG	chr19:55625861-55626115(-)$1	254	216	225	11.7540
ACCUGGGUU	chr9:138972014-138972284(-)$1	270	84	93	12.0000
GCCUGGGCA	chr16:89474853-89475125(-)$1	272	157	166	11.8360
CCAUGGGGA	chr1:2231213-2231491(+)$1	278	116	125	11.4262
CCCUGGGGU	chr10:126737133-126737396(-)$1	263	181	190	16.5901
CCCUGGAGA	chr16:88550337-88550577(+)$1	240	165	174	12.0819
GCCUGGGGG	chr17:75449138-75449385(+)$1	247	116	125	14.4590
CCCUGGGGC	chr16:89179702-89179985(+)$1	283	150	159	16.5081
CCCUGGGCA	chr7:73869054-73869327(+)$1	273	197	206	14.7868
CCCAGGGCU	chr11:2935606-2935852(+)$1	246	33	42	11.1803
CUCUGGGCC	chr16:1793926-1794204(+)$1	278	30	39	11.2622
CCCCGGGGG	chr22:19705625-19705867(+)$1	242	154	163	13.0655
CCCUGGGGA	chr16:89004195-89004445(-)$1	250	151	160	15.9344
CCCUGGGCU	chr8:144675102-144675357(-)$1	255	18	27	15.4426
CCCUGAGGG	chr1:975329-975571(+)$1	242	153	162	12.9016
CACUGGGGA	chr12:133107236-133107522(+)$1	286	119	128	11.6721
CCCUGGCGG	chr16:1361369-1361645(+)$1	276	52	61	13.7213
CCCUGAGCG	chr22:50041866-50042116(-)$1	250	236	245	11.7540
CCCAGGGUG	chr16:88570613-88570879(+)$1	266	247	256	11.5901
UCCUGGGGU	chr9:139579875-139580143(-)$1	268	65	74	13.4754
aCCUGGGUC	chr4:10111921-10112186(-)$1	265	52	61	11.9180
CCCAGGGCU	chr11:2707494-2707782(-)$1	288	7	16	11.1803
CCGUGGGGC	chr16:88577277-88577539(+)$1	262	53	62	11.9180
gccuggggg	chr19:39623995-39624293(+)$1	298	113	122	14.4590
GCCUGGGAG	chr20:31169846-31170100(-)$1	254	21	30	12.3278
UCCUGGGAG	chr1:970670-970930(+)$1	260	170	179	12.1639
CCCUGGCCC	chr16:15247911-15248253(-)$1	342	108	117	11.6721
ACCUGGGCU	chr5:34192500-34192807(-)$1	307	19	28	12.4098
CCCUGGGUU	chr21:46842178-46842425(+)$1	247	38	47	15.0327
CUCUGGGGC	chr8:103666859-103667094(-)$1	235	39	48	12.4098
CCCUGGGCC	chr22:49960201-49960481(-)$1	280	116	125	15.3606
CUCUGGGGU	chr2:240313320-240313593(-)$1	273	230	239	12.4918
CGCUGGGGG	chr19:5066750-5067001(+)$1	251	156	165	13.0655
CCCUGGUGC	chr5:310226-310486(+)$1	260	7	16	12.9836
CCCUGGGUC	chr11:926287-926641(+)$1	354	79	88	14.9508
CCCUGGUCU	chr19:1433639-1433874(+)$1	235	76	85	11.9180
CCAUGGGGU	chr8:142436700-142436924(+)$1	224	159	168	12.0819
GCCUGGGGC	chr14:105631157-105631470(-)$1	313	202	211	13.5573
CACUGGGGC	chr19:1434061-1434325(+)$1	264	140	149	12.2459
CCCUGGGAC	chr11:2400187-2400450(+)$1	263	135	144	14.3770
cccggggcg	chr20:31171312-31171558(-)$1	246	16	25	11.8360
CCCUGGGUG	chr11:73103539-73103836(+)$1	297	205	214	15.8524
CCCCGGGUG	chrX:39943128-39943395(-)$1	267	131	140	11.5081
CCCUGGACC	chr21:46839703-46839973(+)$1	270	66	75	11.5081
CCCUGGCCG	chr19:1630828-1631088(-)$1	260	77	86	12.5737
ACCUGGGGA	chr16:2171782-2172043(-)$1	261	203	212	12.9016
UCCUGGGGU	chr11:65210606-65210822(+)$1	216	44	53	13.4754
GCCUGGGUG	chr22:49925792-49926061(-)$1	269	16	25	12.9016
CCCUGAGGC	chr12:133107885-133108139(+)$1	254	7	16	12.0000
CCCUGGGGG	chr12:111873923-111874184(+)$1	261	116	125	17.4098
CCCUGGUCU	chr22:50020347-50020610(-)$1	263	233	242	11.9180
ACCUGGGUG	chr8:145021020-145021315(-)$1	295	159	168	12.8196
CCUUGGGGG	chr19:2270140-2270392(+)$1	252	98	107	12.8196
ACCUGGGGG	chr16:89555782-89556019(-)$1	237	105	114	14.3770
CCCUGGUGU	chr20:62516190-62516484(+)$1	294	121	130	13.0655
CCCUGGCCG	chr22:50009021-50009253(-)$1	232	126	135	12.5737
CCCUGGUGU	chr17:79963594-79963897(+)$1	303	215	224	13.0655

#otherMatches

#Struct PSSM
iiiiiii[b	chr9:137270263-137270505(+)$1	242	110	119	12.7377
========d	chr7:1063116-1063366(-)$1	250	107	116	12.1639
fffff:ggg	chr8:144616894-144617133(-)$1	239	200	209	13.8852
]dddd22a4	chr22:48177819-48178052(+)$1	233	81	90	14.4590
=====::::	chr19:55625861-55626115(-)$1	254	216	225	11.7540
lleeeee::	chr9:138972014-138972284(-)$1	270	84	93	12.0000
cc]iiiiii	chr16:89474853-89475125(-)$1	272	157	166	11.8360
cc]eeeeec	chr1:2231213-2231491(+)$1	278	116	125	11.4262
#hhhhhhhh	chr10:126737133-126737396(-)$1	263	181	190	16.5901
doooooodd	chr16:88550337-88550577(+)$1	240	165	174	12.0819
EEEEE}CCC	chr17:75449138-75449385(+)$1	247	116	125	14.4590
cccgggggg	chr16:89179702-89179985(+)$1	283	150	159	16.5081
cccssssss	chr7:73869054-73869327(+)$1	273	197	206	14.7868
ggggmmmmg	chr11:2935606-2935852(+)$1	246	33	42	11.1803
JJJJJJJJJ	chr16:1793926-1794204(+)$1	278	30	39	11.2622
C}FFFFFFC	chr22:19705625-19705867(+)$1	242	154	163	13.0655
deeeeeccc	chr16:89004195-89004445(-)$1	250	151	160	15.9344
ddllldddd	chr8:144675102-144675357(-)$1	255	18	27	15.4426
mmiiiiiii	chr1:975329-975571(+)$1	242	153	162	12.9016
allla]bb]	chr12:133107236-133107522(+)$1	286	119	128	11.6721
====dddd[	chr16:1361369-1361645(+)$1	276	52	61	13.7213
mdddd22ff	chr22:50041866-50042116(-)$1	250	236	245	11.7540
cclllccc]	chr16:88570613-88570879(+)$1	266	247	256	11.5901
dddd]ccc]	chr9:139579875-139580143(-)$1	268	65	74	13.4754
""eeeeemm	chr4:10111921-10112186(-)$1	265	52	61	11.9180
FFLLLDDDD	chr11:2707494-2707782(-)$1	288	7	16	11.1803
ddllldddd	chr16:88577277-88577539(+)$1	262	53	62	11.9180
hh]bbdddd	chr19:39623995-39624293(+)$1	298	113	122	14.4590
d[iiiiiii	chr20:31169846-31170100(-)$1	254	21	30	12.3278
eeeGGGGGG	chr1:970670-970930(+)$1	260	170	179	12.1639
!iiiiiiii	chr16:15247911-15248253(-)$1	342	108	117	11.6721
DDDDFFFFF	chr5:34192500-34192807(-)$1	307	19	28	12.4098
IIIIII{BB	chr21:46842178-46842425(+)$1	247	38	47	15.0327
hhhhdddda	chr8:103666859-103667094(-)$1	235	39	48	12.4098
ggggggg]d	chr22:49960201-49960481(-)$1	280	116	125	15.3606
IIIIIIfff	chr2:240313320-240313593(-)$1	273	230	239	12.4918
emmmmeeee	chr19:5066750-5067001(+)$1	251	156	165	13.0655
EEMMMMCCC	chr5:310226-310486(+)$1	260	7	16	12.9836
iiiiii:GG	chr11:926287-926641(+)$1	354	79	88	14.9508
ddd[eeeee	chr19:1433639-1433874(+)$1	235	76	85	11.9180
2ccc]a444	chr8:142436700-142436924(+)$1	224	159	168	12.0819
ffff[eeee	chr14:105631157-105631470(-)$1	313	202	211	13.5573
IBB}FFFFF	chr19:1434061-1434325(+)$1	264	140	149	12.2459
c:dddd!!d	chr11:2400187-2400450(+)$1	263	135	144	14.3770
ffff[aggg	chr20:31171312-31171558(-)$1	246	16	25	11.8360
pbb4444gg	chr11:73103539-73103836(+)$1	297	205	214	15.8524
hlllhhhhh	chrX:39943128-39943395(-)$1	267	131	140	11.5081
::::cccoo	chr21:46839703-46839973(+)$1	270	66	75	11.5081
eeeeebbdd	chr19:1630828-1631088(-)$1	260	77	86	12.5737
:ccc[dddd	chr16:2171782-2172043(-)$1	261	203	212	12.9016
cc!!ddddt	chr11:65210606-65210822(+)$1	216	44	53	13.4754
=========	chr22:49925792-49926061(-)$1	269	16	25	12.9016
ccc:FFFFF	chr12:133107885-133108139(+)$1	254	7	16	12.0000
((((eeeee	chr12:111873923-111874184(+)$1	261	116	125	17.4098
nnneeeee:	chr22:50020347-50020610(-)$1	263	233	242	11.9180
ee"""ccc#	chr8:145021020-145021315(-)$1	295	159	168	12.8196
fffmmmmff	chr19:2270140-2270392(+)$1	252	98	107	12.8196
[dddd[a[e	chr16:89555782-89556019(-)$1	237	105	114	14.3770
ECCCddddo	chr20:62516190-62516484(+)$1	294	121	130	13.0655
dddddd[cc	chr22:50009021-50009253(-)$1	232	126	135	12.5737
eeeee]ccc	chr17:79963594-79963897(+)$1	303	215	224	13.0655

#DB
(((((((.(	chr9:137270263-137270505(+)$1	1	110	119	12.7377
(((((((((	chr7:1063116-1063366(-)$1	1	107	116	12.1639
))))).(((	chr8:144616894-144617133(-)$1	1	200	209	13.8852
.))))..).	chr22:48177819-48178052(+)$1	1	81	90	14.4590
)))))....	chr19:55625861-55626115(-)$1	1	216	225	11.7540
..)))))..	chr9:138972014-138972284(-)$1	1	84	93	12.0000
)).))))))	chr16:89474853-89475125(-)$1	1	157	166	11.8360
)).)))))(	chr1:2231213-2231491(+)$1	1	116	125	11.4262
.((((((((	chr10:126737133-126737396(-)$1	1	181	190	16.5901
(......))	chr16:88550337-88550577(+)$1	1	165	174	12.0819
))))).)))	chr17:75449138-75449385(+)$1	1	116	125	14.4590
)))((((((	chr16:89179702-89179985(+)$1	1	150	159	16.5081
(((......	chr7:73869054-73869327(+)$1	1	197	206	14.7868
((((....)	chr11:2935606-2935852(+)$1	1	33	42	11.1803
(((((((((	chr16:1793926-1794204(+)$1	1	30	39	11.2622
).))))))(	chr22:19705625-19705867(+)$1	1	154	163	13.0655
))))))(((	chr16:89004195-89004445(-)$1	1	151	160	15.9344
((...))))	chr8:144675102-144675357(-)$1	1	18	27	15.4426
..)))))))	chr1:975329-975571(+)$1	1	153	162	12.9016
(...).)).	chr12:133107236-133107522(+)$1	1	119	128	11.6721
((((((((.	chr16:1361369-1361645(+)$1	1	52	61	13.7213
.))))..))	chr22:50041866-50042116(-)$1	1	236	245	11.7540
((...))).	chr16:88570613-88570879(+)$1	1	247	256	11.5901
)))).))).	chr9:139579875-139580143(-)$1	1	65	74	13.4754
..(((((..	chr4:10111921-10112186(-)$1	1	52	61	11.9180
((...((((	chr11:2707494-2707782(-)$1	1	7	16	11.1803
((...))))	chr16:88577277-88577539(+)$1	1	53	62	11.9180
)).))((((	chr19:39623995-39624293(+)$1	1	113	122	14.4590
(.(((((((	chr20:31169846-31170100(-)$1	1	21	30	12.3278
)))((((((	chr1:970670-970930(+)$1	1	170	179	12.1639
.((((((((	chr16:15247911-15248253(-)$1	1	108	117	11.6721
(((((((((	chr5:34192500-34192807(-)$1	1	19	28	12.4098
((((((.((	chr21:46842178-46842425(+)$1	1	38	47	15.0327
)))))))))	chr8:103666859-103667094(-)$1	1	39	48	12.4098
))))))).)	chr22:49960201-49960481(-)$1	1	116	125	15.3606
))))))(((	chr2:240313320-240313593(-)$1	1	230	239	12.4918
(....))))	chr19:5066750-5067001(+)$1	1	156	165	13.0655
((....(((	chr5:310226-310486(+)$1	1	7	16	12.9836
)))))).((	chr11:926287-926641(+)$1	1	79	88	14.9508
(((.(((((	chr19:1433639-1433874(+)$1	1	76	85	11.9180
.))).)...	chr8:142436700-142436924(+)$1	1	159	168	12.0819
((((.((((	chr14:105631157-105631470(-)$1	1	202	211	13.5573
))).)))))	chr19:1434061-1434325(+)$1	1	140	149	12.2459
).((((..(	chr11:2400187-2400450(+)$1	1	135	144	14.3770
((((.((((	chr20:31171312-31171558(-)$1	1	16	25	11.8360
.))....))	chr11:73103539-73103836(+)$1	1	205	214	15.8524
(...)))))	chrX:39943128-39943395(-)$1	1	131	140	11.5081
....(((..	chr21:46839703-46839973(+)$1	1	66	75	11.5081
)))))))))	chr19:1630828-1631088(-)$1	1	77	86	12.5737
.(((.((((	chr16:2171782-2172043(-)$1	1	203	212	12.9016
((..((((.	chr11:65210606-65210822(+)$1	1	44	53	13.4754
(((((((((	chr22:49925792-49926061(-)$1	1	16	25	12.9016
))).(((((	chr12:133107885-133108139(+)$1	1	7	16	12.0000
....(((((	chr12:111873923-111874184(+)$1	1	116	125	17.4098
...))))).	chr22:50020347-50020610(-)$1	1	233	242	11.9180
((...(((.	chr8:145021020-145021315(-)$1	1	159	168	12.8196
(((....))	chr19:2270140-2270392(+)$1	1	98	107	12.8196
.((((.(.(	chr16:89555782-89556019(-)$1	1	105	114	14.3770
((((((((.	chr20:62516190-62516484(+)$1	1	121	130	13.0655
))((((.((	chr22:50009021-50009253(-)$1	1	126	135	12.5737
))))).)))	chr17:79963594-79963897(+)$1	1	215	224	13.0655

#PSSM
C : 0.68	G : 0.09	U : 0.08	A : 0.08	a : 0.01	g : 0.01	c : 0.01	
C : 0.85	U : 0.06	A : 0.03	c : 0.03	G : 0.01	
C : 0.90	A : 0.03	c : 0.03	G : 0.01	U : 0.01	
U : 0.88	A : 0.04	C : 0.03	u : 0.01	g : 0.01	
G : 0.96	g : 0.03	
G : 0.91	A : 0.04	g : 0.03	
G : 0.77	U : 0.09	C : 0.06	A : 0.03	g : 0.03	
G : 0.47	C : 0.24	U : 0.18	A : 0.06	g : 0.01	c : 0.01	
G : 0.37	U : 0.24	C : 0.22	A : 0.11	g : 0.03	

#score	797.8196721311484
#seq	61
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_transcript_m1_run2.nuc.txt

#NT
GCGGC	chr4:57302327-57302569(+)$1	242	4	9	15.0000
gcggc	chr19:42387189-42387457(+)$1	268	28	33	15.0000
GCGGC	chr7:74489453-74489753(-)$1	300	144	149	15.0000
gcggc	chr9:101867323-101867580(+)$1	257	69	74	15.0000
GCGGC	chr12:54718813-54719067(+)$1	254	84	89	15.0000
GCGGC	chr4:1713548-1713785(-)$1	237	160	165	15.0000
GCGGC	chr16:85832915-85833253(-)$1	338	111	116	15.0000
GCGGC	chr8:25316629-25317032(+)$1	403	210	215	15.0000
GCGGC	chr1:43637658-43637943(-)$1	285	70	75	15.0000
GCGGC	chr1:150521794-150522078(+)$1	284	56	61	15.0000
GCGGC	chr11:20409173-20409423(+)$1	250	44	49	15.0000
GCGGC	chr12:48099634-48099888(-)$1	254	131	136	15.0000
GCGGC	chr7:150020333-150020562(+)$1	229	122	127	15.0000
gcggc	chr20:306138-306405(+)$1	267	71	76	15.0000
gcggc	chr1:15850463-15850781(-)$1	318	29	34	15.0000
GCGGC	chr6:150038884-150039198(-)$1	314	3	8	15.0000
GCGGC	chr3:9932292-9932558(+)$1	266	17	22	15.0000
gcggc	chr7:92465691-92465989(-)$1	298	10	15	15.0000
GCGGC	chr17:65362555-65362794(-)$1	239	1	6	15.0000
GCGGC	chr22:22020247-22020516(+)$1	269	73	78	15.0000
GCGGC	chr21:47706018-47706280(-)$1	262	96	101	15.0000
GCGGC	chr2:178257394-178257713(+)$1	319	101	106	15.0000
GCGGC	chr1:78225282-78225601(-)$1	319	53	58	15.0000
GCGGC	chr9:131266910-131267159(+)$1	249	109	114	15.0000
GCGGC	chr5:177580569-177580832(-)$1	263	2	7	15.0000
gcggc	chr6:86352866-86353103(-)$1	237	0	5	15.0000
GCGGC	chr7:102715616-102715879(+)$1	263	11	16	15.0000
GCGGC	chr9:79009013-79009286(-)$1	273	19	24	15.0000
GCGGC	chr3:136580976-136581268(+)$1	292	107	112	15.0000
gcggc	chr9:136242755-136243042(-)$1	287	28	33	15.0000
GCGGC	chr3:122233520-122233863(-)$1	343	122	127	15.0000
GCGGC	chr5:134094464-134094728(+)$1	264	214	219	15.0000
GCGGC	chr1:159750867-159751137(+)$1	270	88	93	15.0000
GCGGC	chr16:66864684-66864914(-)$1	230	18	23	15.0000
GCGGC	chr17:38444053-38444349(+)$1	296	96	101	15.0000
GCGGC	chr20:10414725-10414951(-)$1	226	45	50	15.0000
GCGGC	chr3:184032262-184032563(+)$1	301	22	27	15.0000
GCGGC	chr16:31191373-31191649(+)$1	276	45	50	15.0000
GCGGC	chr21:33984496-33984808(-)$1	312	32	37	15.0000
GCGGC	chr11:61584077-61584335(-)$1	258	85	90	15.0000
GCGGC	chr15:59981267-59981516(-)$1	249	38	43	15.0000
GCGGC	chr2:85788408-85788713(-)$1	305	46	51	15.0000
gcggC	chr3:48541385-48541682(-)$1	297	77	82	15.0000
GCGGC	chr4:54930584-54930826(-)$1	242	76	81	15.0000
GCGGC	chr7:56119476-56119773(+)$1	297	68	73	15.0000
GCGGC	chr7:23338917-23339183(+)$1	266	64	69	15.0000
GCGGC	chr11:64084820-64085128(-)$1	308	122	127	15.0000
GCGGC	chr7:45151136-45151406(-)$1	270	131	136	15.0000
GCGGC	chr2:239148382-239148679(-)$1	297	37	42	15.0000
GCGGC	chr10:104262253-104262566(-)$1	313	76	81	15.0000
gcggc	chr20:57466607-57466877(+)$1	270	11	16	15.0000
gcggc	chr22:19109751-19110013(-)$1	262	54	59	15.0000
gcggc	chr7:56032193-56032458(+)$1	265	53	58	15.0000
GCGGC	chr14:81687004-81687254(-)$1	250	57	62	15.0000
GCGGC	chr8:145159533-145159791(+)$1	258	76	81	15.0000
GCGGC	chr12:110887965-110888244(-)$1	279	17	22	15.0000
gcggc	chr8:144099818-144100105(+)$1	287	2	7	15.0000
gcggc	chr11:64851357-64851630(-)$1	273	142	147	15.0000
GCGGC	chr6:38670645-38670889(-)$1	244	84	89	15.0000
GCGGC	chr19:4670070-4670328(-)$1	258	107	112	15.0000
GCGGC	chr14:105478062-105478331(-)$1	269	163	168	15.0000
GCGGC	chr2:131850711-131850993(-)$1	282	50	55	15.0000
GCGGC	chr16:69345271-69345538(+)$1	267	7	12	15.0000
GCGGC	chr2:74374874-74375128(-)$1	254	26	31	15.0000
GCGGC	chrX:102470508-102470777(+)$1	269	127	132	15.0000
gcggc	chrX:20284616-20284874(-)$1	258	48	53	15.0000
GCGGC	chr3:56716848-56717185(-)$1	337	66	71	15.0000
GCGGC	chr19:39421172-39421464(-)$1	292	105	110	15.0000
GCGGC	chr7:75988080-75988401(-)$1	321	40	45	15.0000
gcggc	chr5:141016201-141016441(-)$1	240	29	34	15.0000
GCGGC	chr1:12081631-12081908(+)$1	277	111	116	15.0000
GCGGC	chr16:31119631-31119901(+)$1	270	81	86	15.0000
gcggc	chr3:88107964-88108246(-)$1	282	115	120	15.0000
GCGGC	chr6:33176200-33176516(+)$1	316	101	106	15.0000
GCGGC	chr2:40006150-40006477(-)$1	327	168	173	15.0000

#otherMatches

#Struct PSSM
ggggg	chr11:73693690-73693980(-)$1	290	207	212	15.0000
b[ccc	chr4:57302327-57302569(+)$1	242	4	9	15.0000
%%%%c	chr19:42387189-42387457(+)$1	268	28	33	15.0000
GGGGG	chr7:74489453-74489753(-)$1	300	144	149	15.0000
hh[bb	chr9:101867323-101867580(+)$1	257	69	74	15.0000
ppccc	chr12:54718813-54719067(+)$1	254	84	89	15.0000
b]ccc	chr4:1713548-1713785(-)$1	237	160	165	15.0000
HHHHH	chr16:85832915-85833253(-)$1	338	111	116	15.0000
c[eee	chr8:25316629-25317032(+)$1	403	210	215	15.0000
bb]cc	chr1:43637658-43637943(-)$1	285	70	75	15.0000
=====	chr1:150521794-150522078(+)$1	284	56	61	15.0000
dddd]	chr11:20409173-20409423(+)$1	250	44	49	15.0000
hhhhh	chr12:48099634-48099888(-)$1	254	131	136	15.0000
ccc!!	chr7:150020333-150020562(+)$1	229	122	127	15.0000
]dddd	chr20:306138-306405(+)$1	267	71	76	15.0000
BB:cc	chr1:15850463-15850781(-)$1	318	29	34	15.0000
FFFFF	chr6:150038884-150039198(-)$1	314	3	8	15.0000
CCDDD	chr3:9932292-9932558(+)$1	266	17	22	15.0000
c[ddd	chr7:92465691-92465989(-)$1	298	10	15	15.0000
BDDDD	chr17:65362555-65362794(-)$1	239	1	6	15.0000
fffff	chr22:22020247-22020516(+)$1	269	73	78	15.0000
HHHPP	chr21:47706018-47706280(-)$1	262	96	101	15.0000
EEEEE	chr2:178257394-178257713(+)$1	319	101	106	15.0000
{A{FF	chr1:78225282-78225601(-)$1	319	53	58	15.0000
=====	chr9:131266910-131267159(+)$1	249	109	114	15.0000
GGGGG	chr5:177580569-177580832(-)$1	263	2	7	15.0000
cccbb	chr6:86352866-86353103(-)$1	237	0	5	15.0000
ccooo	chr7:102715616-102715879(+)$1	263	11	16	15.0000
fgggg	chr9:79009013-79009286(-)$1	273	19	24	15.0000
a]eee	chr3:136580976-136581268(+)$1	292	107	112	15.0000
GGGGG	chr9:136242755-136243042(-)$1	287	28	33	15.0000
cc!!h	chr3:122233520-122233863(-)$1	343	122	127	15.0000
fffff	chr5:134094464-134094728(+)$1	264	214	219	15.0000
CCccc	chr1:159750867-159751137(+)$1	270	88	93	15.0000
ddd[a	chr16:66864684-66864914(-)$1	230	18	23	15.0000
eeeee	chr17:38444053-38444349(+)$1	296	96	101	15.0000
eeeee	chr20:10414725-10414951(-)$1	226	45	50	15.0000
JJJJJ	chr3:184032262-184032563(+)$1	301	22	27	15.0000
iiibb	chr16:31191373-31191649(+)$1	276	45	50	15.0000
HHKKC	chr21:33984496-33984808(-)$1	312	32	37	15.0000
blllb	chr11:61584077-61584335(-)$1	258	85	90	15.0000
DHHHH	chr15:59981267-59981516(-)$1	249	38	43	15.0000
eeeem	chr2:85788408-85788713(-)$1	305	46	51	15.0000
ffff#	chr3:48541385-48541682(-)$1	297	77	82	15.0000
mmm==	chr4:54930584-54930826(-)$1	242	76	81	15.0000
eeee]	chr7:56119476-56119773(+)$1	297	68	73	15.0000
=====	chr7:23338917-23339183(+)$1	266	64	69	15.0000
e[bb[	chr11:64084820-64085128(-)$1	308	122	127	15.0000
4444d	chr7:45151136-45151406(-)$1	270	131	136	15.0000
ggggg	chr2:239148382-239148679(-)$1	297	37	42	15.0000
fffff	chr10:104262253-104262566(-)$1	313	76	81	15.0000
eeeee	chr20:57466607-57466877(+)$1	270	11	16	15.0000
DDDDD	chr22:19109751-19110013(-)$1	262	54	59	15.0000
]dddd	chr7:56032193-56032458(+)$1	265	53	58	15.0000
mdddd	chr14:81687004-81687254(-)$1	250	57	62	15.0000
eeeee	chr8:145159533-145159791(+)$1	258	76	81	15.0000
{BB{E	chr12:110887965-110888244(-)$1	279	17	22	15.0000
C{DDD	chr8:144099818-144100105(+)$1	287	2	7	15.0000
ddccc	chr11:64851357-64851630(-)$1	273	142	147	15.0000
iiiii	chr6:38670645-38670889(-)$1	244	84	89	15.0000
2bb]a	chr19:4670070-4670328(-)$1	258	107	112	15.0000
5555c	chr14:105478062-105478331(-)$1	269	163	168	15.0000
FF{CC	chr2:131850711-131850993(-)$1	282	50	55	15.0000
CBB{E	chr16:69345271-69345538(+)$1	267	7	12	15.0000
ccbb[	chr2:74374874-74375128(-)$1	254	26	31	15.0000
eeee[	chrX:102470508-102470777(+)$1	269	127	132	15.0000
bb22a	chrX:20284616-20284874(-)$1	258	48	53	15.0000
mmmmd	chr3:56716848-56717185(-)$1	337	66	71	15.0000
]bbee	chr19:39421172-39421464(-)$1	292	105	110	15.0000
fffff	chr7:75988080-75988401(-)$1	321	40	45	15.0000
cccbb	chr5:141016201-141016441(-)$1	240	29	34	15.0000
g[ddd	chr1:12081631-12081908(+)$1	277	111	116	15.0000
a22cc	chr16:31119631-31119901(+)$1	270	81	86	15.0000
{DDDD	chr3:88107964-88108246(-)$1	282	115	120	15.0000
bbmmm	chr6:33176200-33176516(+)$1	316	101	106	15.0000
ggg[d	chr2:40006150-40006477(-)$1	327	168	173	15.0000

#DB
)))))	chr11:73693690-73693980(-)$1	1	207	212	15.0000
(.(((	chr4:57302327-57302569(+)$1	1	4	9	15.0000
....(	chr19:42387189-42387457(+)$1	1	28	33	15.0000
)))))	chr7:74489453-74489753(-)$1	1	144	149	15.0000
((.((	chr9:101867323-101867580(+)$1	1	69	74	15.0000
..)))	chr12:54718813-54719067(+)$1	1	84	89	15.0000
).)))	chr4:1713548-1713785(-)$1	1	160	165	15.0000
(((((	chr16:85832915-85833253(-)$1	1	111	116	15.0000
(.(((	chr8:25316629-25317032(+)$1	1	210	215	15.0000
)).))	chr1:43637658-43637943(-)$1	1	70	75	15.0000
(((((	chr1:150521794-150522078(+)$1	1	56	61	15.0000
)))).	chr11:20409173-20409423(+)$1	1	44	49	15.0000
)))))	chr12:48099634-48099888(-)$1	1	131	136	15.0000
(((..	chr7:150020333-150020562(+)$1	1	122	127	15.0000
.))))	chr20:306138-306405(+)$1	1	71	76	15.0000
((.((	chr1:15850463-15850781(-)$1	1	29	34	15.0000
(((((	chr6:150038884-150039198(-)$1	1	3	8	15.0000
(((((	chr3:9932292-9932558(+)$1	1	17	22	15.0000
(.(((	chr7:92465691-92465989(-)$1	1	10	15	15.0000
(((((	chr17:65362555-65362794(-)$1	1	1	6	15.0000
(((((	chr22:22020247-22020516(+)$1	1	73	78	15.0000
(((..	chr21:47706018-47706280(-)$1	1	96	101	15.0000
)))))	chr2:178257394-178257713(+)$1	1	101	106	15.0000
.(.((	chr1:78225282-78225601(-)$1	1	53	58	15.0000
(((((	chr9:131266910-131267159(+)$1	1	109	114	15.0000
(((((	chr5:177580569-177580832(-)$1	1	2	7	15.0000
(((((	chr6:86352866-86353103(-)$1	1	0	5	15.0000
((...	chr7:102715616-102715879(+)$1	1	11	16	15.0000
(((((	chr9:79009013-79009286(-)$1	1	19	24	15.0000
).)))	chr3:136580976-136581268(+)$1	1	107	112	15.0000
(((((	chr9:136242755-136243042(-)$1	1	28	33	15.0000
((..(	chr3:122233520-122233863(-)$1	1	122	127	15.0000
(((((	chr5:134094464-134094728(+)$1	1	214	219	15.0000
(((((	chr1:159750867-159751137(+)$1	1	88	93	15.0000
(((.(	chr16:66864684-66864914(-)$1	1	18	23	15.0000
(((((	chr17:38444053-38444349(+)$1	1	96	101	15.0000
(((((	chr20:10414725-10414951(-)$1	1	45	50	15.0000
(((((	chr3:184032262-184032563(+)$1	1	22	27	15.0000
)))))	chr16:31191373-31191649(+)$1	1	45	50	15.0000
((..(	chr21:33984496-33984808(-)$1	1	32	37	15.0000
(...)	chr11:61584077-61584335(-)$1	1	85	90	15.0000
(((((	chr15:59981267-59981516(-)$1	1	38	43	15.0000
((((.	chr2:85788408-85788713(-)$1	1	46	51	15.0000
((((.	chr3:48541385-48541682(-)$1	1	77	82	15.0000
...))	chr4:54930584-54930826(-)$1	1	76	81	15.0000
)))).	chr7:56119476-56119773(+)$1	1	68	73	15.0000
(((((	chr7:23338917-23339183(+)$1	1	64	69	15.0000
(.((.	chr11:64084820-64085128(-)$1	1	122	127	15.0000
....)	chr7:45151136-45151406(-)$1	1	131	136	15.0000
)))))	chr2:239148382-239148679(-)$1	1	37	42	15.0000
)))))	chr10:104262253-104262566(-)$1	1	76	81	15.0000
(((((	chr20:57466607-57466877(+)$1	1	11	16	15.0000
(((((	chr22:19109751-19110013(-)$1	1	54	59	15.0000
.))))	chr7:56032193-56032458(+)$1	1	53	58	15.0000
.))))	chr14:81687004-81687254(-)$1	1	57	62	15.0000
(((((	chr8:145159533-145159791(+)$1	1	76	81	15.0000
.((.(	chr12:110887965-110888244(-)$1	1	17	22	15.0000
(.(((	chr8:144099818-144100105(+)$1	1	2	7	15.0000
(((((	chr11:64851357-64851630(-)$1	1	142	147	15.0000
(((((	chr6:38670645-38670889(-)$1	1	84	89	15.0000
.)).)	chr19:4670070-4670328(-)$1	1	107	112	15.0000
....)	chr14:105478062-105478331(-)$1	1	163	168	15.0000
((.((	chr2:131850711-131850993(-)$1	1	50	55	15.0000
(((.(	chr16:69345271-69345538(+)$1	1	7	12	15.0000
))((.	chr2:74374874-74375128(-)$1	1	26	31	15.0000
((((.	chrX:102470508-102470777(+)$1	1	127	132	15.0000
))..)	chrX:20284616-20284874(-)$1	1	48	53	15.0000
....)	chr3:56716848-56717185(-)$1	1	66	71	15.0000
.))((	chr19:39421172-39421464(-)$1	1	105	110	15.0000
(((((	chr7:75988080-75988401(-)$1	1	40	45	15.0000
)))))	chr5:141016201-141016441(-)$1	1	29	34	15.0000
(.(((	chr1:12081631-12081908(+)$1	1	111	116	15.0000
)..))	chr16:31119631-31119901(+)$1	1	81	86	15.0000
.((((	chr3:88107964-88108246(-)$1	1	115	120	15.0000
((...	chr6:33176200-33176516(+)$1	1	101	106	15.0000
(((.(	chr2:40006150-40006477(-)$1	1	168	173	15.0000

#PSSM
G : 0.78	g : 0.21	
C : 0.78	c : 0.21	
G : 0.78	g : 0.21	
G : 0.78	g : 0.21	
C : 0.80	c : 0.19	

#score	1140.0000000000002
#seq	76
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_CDS_m2_run2.nuc.txt

#NT
CCCCU	chr17:4849020-4849314(-)$1	294	135	140	14.9999
CCCCU	chr19:15536453-15536730(-)$1	277	142	147	14.9999
CCCCU	chr19:4361485-4361746(-)$1	261	135	140	14.9999
CCCCU	chr19:19230697-19230960(-)$1	263	111	116	14.9999
CCCCU	chr11:5289622-5289892(-)$1	270	120	125	14.9999
CCCCU	chr15:69747495-69747726(+)$1	231	108	113	14.9999
CCCCU	chr12:53291049-53291331(-)$1	282	133	138	14.9999
CCCCU	chr7:75692731-75693012(+)$1	281	164	169	14.9999
CCCCU	chr16:85688296-85688535(+)$1	239	215	220	14.9999
CCCCU	chr20:36758468-36758728(-)$1	260	112	117	14.9999
CCCCU	chr12:862897-863178(+)$1	281	258	263	14.9999
CCCCU	chr12:56555072-56555422(+)$1	350	31	36	14.9999
CCCCU	chr16:85689340-85689613(+)$1	273	207	212	14.9999
CCCCU	chr19:54969849-54970153(+)$1	304	1	6	14.9999
CCCCU	chr9:134019593-134019870(+)$1	277	139	144	14.9999
CCCCU	chr12:112036843-112037133(-)$1	290	120	125	14.9999
CCCCU	chrX:153284378-153284630(-)$1	252	188	193	14.9999
CCCCU	chr19:2247930-2248253(+)$1	323	106	111	14.9999
CCCCU	chr5:175958362-175958590(-)$1	228	18	23	14.9999
CCCCU	chr3:184035046-184035309(+)$1	263	123	128	14.9999
CCCCU	chr3:47451923-47452157(+)$1	234	69	74	14.9999
CCCCU	chr1:152004950-152005259(-)$1	309	125	130	14.9999
ccccu	chr1:171526906-171527171(+)$1	265	64	69	14.9999
CCCCU	chr12:53701193-53701505(-)$1	312	102	107	14.9999
CCCCU	chr12:124841138-124841432(-)$1	294	140	145	14.9999
CCCCU	chrX:153576944-153577342(-)$1	398	101	106	14.9999
CCCCU	chr7:143078304-143078542(+)$1	238	10	15	14.9999
ccccu	chr7:29923560-29923921(+)$1	361	206	211	14.9999
CCCCU	chr2:74274037-74274361(+)$1	324	18	23	14.9999
CCCCU	chr1:2125437-2125700(-)$1	263	99	104	14.9999
CCCCU	chr8:22471563-22471853(+)$1	290	92	97	14.9999
CCCCU	chr10:74033859-74034185(+)$1	326	38	43	14.9999
CCCCU	chr19:56203159-56203413(+)$1	254	19	24	14.9999
CCCCU	chr15:72491913-72492145(-)$1	232	167	172	14.9999
ccccu	chr1:171526728-171527017(+)$1	289	242	247	14.9999
CCCCU	chr5:31526608-31526952(-)$1	344	85	90	14.9999
CCCCU	chr22:22890681-22890959(-)$1	278	42	47	14.9999
CCCCU	chr19:49378969-49379280(+)$1	311	47	52	14.9999
CCCCU	chr12:132635923-132636201(+)$1	278	170	175	14.9999
CCCCU	chr16:30732125-30732373(+)$1	248	30	35	14.9999
CCCCU	chr17:66526469-66526764(+)$1	295	3	8	14.9999
CCCCU	chrX:129147503-129147752(+)$1	249	64	69	14.9999
ccccu	chr6:34212686-34212922(+)$1	236	57	62	14.9999
ccccu	chr10:121355849-121356125(-)$1	276	68	73	14.9999
CCCCU	chr12:120114290-120114568(+)$1	278	126	131	14.9999
CCCCU	chr7:73011592-73011933(-)$1	341	17	22	14.9999
CCCCU	chr16:68156286-68156546(+)$1	260	119	124	14.9999
CCCCU	chr12:122260622-122260930(+)$1	308	80	85	14.9999
CCCCU	chr22:37964084-37964331(+)$1	247	109	114	14.9999
ccccu	chr16:30748624-30748883(+)$1	259	193	198	14.9999
CCCCU	chr19:18308097-18308398(-)$1	301	138	143	14.9999
CCCCU	chr11:60899601-60899865(-)$1	264	65	70	14.9999
CCCCU	chr17:42153303-42153644(+)$1	341	187	192	14.9999
ccccu	chr5:137803521-137803784(+)$1	263	19	24	14.9999
CCCCU	chr11:67810644-67810936(+)$1	292	64	69	14.9999
CCCCU	chr19:42753409-42753672(-)$1	263	138	143	14.9999
CCCCU	chr8:124219391-124219664(+)$1	273	230	235	14.9999
CCCCU	chrX:141291461-141291721(-)$1	260	100	105	14.9999
CCCCU	chr12:48187071-48187424(-)$1	353	46	51	14.9999
CCCCU	chr12:57919850-57920125(+)$1	275	6	11	14.9999
CCCCU	chr19:41858820-41859079(-)$1	259	52	57	14.9999
CCCCU	chr12:125284619-125284888(-)$1	269	78	83	14.9999
CCCCU	chr6:30690239-30690472(+)$1	233	63	68	14.9999
CCCCU	chr6:31610547-31610843(-)$1	296	74	79	14.9999
CCCCU	chr19:15354032-15354369(-)$1	337	181	186	14.9999
CCCCU	chrX:153706160-153706449(-)$1	289	38	43	14.9999
CCCCU	chr8:37730488-37730730(-)$1	242	77	82	14.9999
CCCCU	chr1:40029245-40029507(-)$1	262	164	169	14.9999
CCCCU	chr20:62152822-62153041(+)$1	219	135	140	14.9999
CCCCU	chr22:24108053-24108316(-)$1	263	88	93	14.9999
CCCCU	chr19:2247883-2248130(+)$1	247	153	158	14.9999
CCCCU	chr12:132400842-132401097(+)$1	255	27	32	14.9999
CCCCU	chr3:9879637-9879936(-)$1	299	83	88	14.9999

#otherMatches

#Struct PSSM
ccc[i	chr5:154181479-154181730(+)$1	251	64	69	14.9999
cc+++	chr17:4849020-4849314(-)$1	294	135	140	14.9999
[aooo	chr19:15536453-15536730(-)$1	277	142	147	14.9999
b]ccc	chr19:4361485-4361746(-)$1	261	135	140	14.9999
:::::	chr19:19230697-19230960(-)$1	263	111	116	14.9999
ee:::	chr11:5289622-5289892(-)$1	270	120	125	14.9999
a[eee	chr15:69747495-69747726(+)$1	231	108	113	14.9999
DD::f	chr12:53291049-53291331(-)$1	282	133	138	14.9999
::eee	chr7:75692731-75693012(+)$1	281	164	169	14.9999
BDDDD	chr16:85688296-85688535(+)$1	239	215	220	14.9999
]dddd	chr20:36758468-36758728(-)$1	260	112	117	14.9999
b]hhh	chr12:862897-863178(+)$1	281	258	263	14.9999
:::::	chr12:56555072-56555422(+)$1	350	31	36	14.9999
%%%%g	chr16:85689340-85689613(+)$1	273	207	212	14.9999
:::::	chr19:54969849-54970153(+)$1	304	1	6	14.9999
llldd	chr9:134019593-134019870(+)$1	277	139	144	14.9999
ff:::	chr12:112036843-112037133(-)$1	290	120	125	14.9999
ddIII	chrX:153284378-153284630(-)$1	252	188	193	14.9999
3eeee	chr19:2247930-2248253(+)$1	323	106	111	14.9999
qqqqq	chr5:175958362-175958590(-)$1	228	18	23	14.9999
llldd	chr3:184035046-184035309(+)$1	263	123	128	14.9999
>>>cc	chr3:47451923-47452157(+)$1	234	69	74	14.9999
55555	chr1:152004950-152005259(-)$1	309	125	130	14.9999
333cc	chr1:171526906-171527171(+)$1	265	64	69	14.9999
cffff	chr12:53701193-53701505(-)$1	312	102	107	14.9999
$$$a!	chr12:124841138-124841432(-)$1	294	140	145	14.9999
%%%%f	chrX:153576944-153577342(-)$1	398	101	106	14.9999
ddppp	chr7:143078304-143078542(+)$1	238	10	15	14.9999
uuuuu	chr7:29923560-29923921(+)$1	361	206	211	14.9999
CQQQQ	chr2:74274037-74274361(+)$1	324	18	23	14.9999
::::b	chr1:2125437-2125700(-)$1	263	99	104	14.9999
b$$$$	chr8:22471563-22471853(+)$1	290	92	97	14.9999
GG:::	chr10:74033859-74034185(+)$1	326	38	43	14.9999
mmmcc	chr19:56203159-56203413(+)$1	254	19	24	14.9999
bbb]c	chr15:72491913-72492145(-)$1	232	167	172	14.9999
333cc	chr1:171526728-171527017(+)$1	289	242	247	14.9999
sssss	chr5:31526608-31526952(-)$1	344	85	90	14.9999
dqqqq	chr22:22890681-22890959(-)$1	278	42	47	14.9999
ammmm	chr19:49378969-49379280(+)$1	311	47	52	14.9999
"bb[d	chr12:132635923-132636201(+)$1	278	170	175	14.9999
D::::	chr16:30732125-30732373(+)$1	248	30	35	14.9999
EE{DD	chr17:66526469-66526764(+)$1	295	3	8	14.9999
aqqqq	chrX:129147503-129147752(+)$1	249	64	69	14.9999
:::::	chr6:34212686-34212922(+)$1	236	57	62	14.9999
FFFFD	chr10:121355849-121356125(-)$1	276	68	73	14.9999
::::F	chr12:120114290-120114568(+)$1	278	126	131	14.9999
:::::	chr7:73011592-73011933(-)$1	341	17	22	14.9999
cc"""	chr16:68156286-68156546(+)$1	260	119	124	14.9999
fffff	chr12:122260622-122260930(+)$1	308	80	85	14.9999
ddd:b	chr22:37964084-37964331(+)$1	247	109	114	14.9999
:::::	chr16:30748624-30748883(+)$1	259	193	198	14.9999
:::::	chr19:18308097-18308398(-)$1	301	138	143	14.9999
:::ii	chr11:60899601-60899865(-)$1	264	65	70	14.9999
+++++	chr17:42153303-42153644(+)$1	341	187	192	14.9999
+bbff	chr5:137803521-137803784(+)$1	263	19	24	14.9999
gg555	chr11:67810644-67810936(+)$1	292	64	69	14.9999
nnnnd	chr19:42753409-42753672(-)$1	263	138	143	14.9999
^^^^^	chr8:124219391-124219664(+)$1	273	230	235	14.9999
cc22f	chrX:141291461-141291721(-)$1	260	100	105	14.9999
""ccc	chr12:48187071-48187424(-)$1	353	46	51	14.9999
qqqqq	chr12:57919850-57920125(+)$1	275	6	11	14.9999
eeeem	chr19:41858820-41859079(-)$1	259	52	57	14.9999
:::::	chr12:125284619-125284888(-)$1	269	78	83	14.9999
eee""	chr6:30690239-30690472(+)$1	233	63	68	14.9999
eeeee	chr6:31610547-31610843(-)$1	296	74	79	14.9999
@@@GG	chr19:15354032-15354369(-)$1	337	181	186	14.9999
b::::	chrX:153706160-153706449(-)$1	289	38	43	14.9999
^^^^^	chr8:37730488-37730730(-)$1	242	77	82	14.9999
dd:::	chr1:40029245-40029507(-)$1	262	164	169	14.9999
b::::	chr20:62152822-62153041(+)$1	219	135	140	14.9999
CCDDD	chr22:24108053-24108316(-)$1	263	88	93	14.9999
3eeee	chr19:2247883-2248130(+)$1	247	153	158	14.9999
c9999	chr12:132400842-132401097(+)$1	255	27	32	14.9999
rrrrr	chr3:9879637-9879936(-)$1	299	83	88	14.9999

#DB
(((.(	chr5:154181479-154181730(+)$1	1	64	69	14.9999
((...	chr17:4849020-4849314(-)$1	1	135	140	14.9999
.(...	chr19:15536453-15536730(-)$1	1	142	147	14.9999
).)))	chr19:4361485-4361746(-)$1	1	135	140	14.9999
.....	chr19:19230697-19230960(-)$1	1	111	116	14.9999
))...	chr11:5289622-5289892(-)$1	1	120	125	14.9999
(.(((	chr15:69747495-69747726(+)$1	1	108	113	14.9999
((..(	chr12:53291049-53291331(-)$1	1	133	138	14.9999
..(((	chr7:75692731-75693012(+)$1	1	164	169	14.9999
)))))	chr16:85688296-85688535(+)$1	1	215	220	14.9999
.))))	chr20:36758468-36758728(-)$1	1	112	117	14.9999
).)))	chr12:862897-863178(+)$1	1	258	263	14.9999
.....	chr12:56555072-56555422(+)$1	1	31	36	14.9999
....(	chr16:85689340-85689613(+)$1	1	207	212	14.9999
.....	chr19:54969849-54970153(+)$1	1	1	6	14.9999
...))	chr9:134019593-134019870(+)$1	1	139	144	14.9999
))...	chr12:112036843-112037133(-)$1	1	120	125	14.9999
))(((	chrX:153284378-153284630(-)$1	1	188	193	14.9999
.))))	chr19:2247930-2248253(+)$1	1	106	111	14.9999
.....	chr5:175958362-175958590(-)$1	1	18	23	14.9999
...))	chr3:184035046-184035309(+)$1	1	123	128	14.9999
...))	chr3:47451923-47452157(+)$1	1	69	74	14.9999
.....	chr1:152004950-152005259(-)$1	1	125	130	14.9999
...))	chr1:171526906-171527171(+)$1	1	64	69	14.9999
)))))	chr12:53701193-53701505(-)$1	1	102	107	14.9999
...(.	chr12:124841138-124841432(-)$1	1	140	145	14.9999
....(	chrX:153576944-153577342(-)$1	1	101	106	14.9999
((...	chr7:143078304-143078542(+)$1	1	10	15	14.9999
.....	chr7:29923560-29923921(+)$1	1	206	211	14.9999
(....	chr2:74274037-74274361(+)$1	1	18	23	14.9999
....(	chr1:2125437-2125700(-)$1	1	99	104	14.9999
(....	chr8:22471563-22471853(+)$1	1	92	97	14.9999
((...	chr10:74033859-74034185(+)$1	1	38	43	14.9999
...))	chr19:56203159-56203413(+)$1	1	19	24	14.9999
))).)	chr15:72491913-72492145(-)$1	1	167	172	14.9999
...))	chr1:171526728-171527017(+)$1	1	242	247	14.9999
.....	chr5:31526608-31526952(-)$1	1	85	90	14.9999
(....	chr22:22890681-22890959(-)$1	1	42	47	14.9999
(....	chr19:49378969-49379280(+)$1	1	47	52	14.9999
.((.(	chr12:132635923-132636201(+)$1	1	170	175	14.9999
(....	chr16:30732125-30732373(+)$1	1	30	35	14.9999
((.((	chr17:66526469-66526764(+)$1	1	3	8	14.9999
(....	chrX:129147503-129147752(+)$1	1	64	69	14.9999
.....	chr6:34212686-34212922(+)$1	1	57	62	14.9999
))))(	chr10:121355849-121356125(-)$1	1	68	73	14.9999
....)	chr12:120114290-120114568(+)$1	1	126	131	14.9999
.....	chr7:73011592-73011933(-)$1	1	17	22	14.9999
((...	chr16:68156286-68156546(+)$1	1	119	124	14.9999
(((((	chr12:122260622-122260930(+)$1	1	80	85	14.9999
))).(	chr22:37964084-37964331(+)$1	1	109	114	14.9999
.....	chr16:30748624-30748883(+)$1	1	193	198	14.9999
.....	chr19:18308097-18308398(-)$1	1	138	143	14.9999
...((	chr11:60899601-60899865(-)$1	1	65	70	14.9999
.....	chr17:42153303-42153644(+)$1	1	187	192	14.9999
.((((	chr5:137803521-137803784(+)$1	1	19	24	14.9999
))...	chr11:67810644-67810936(+)$1	1	64	69	14.9999
....)	chr19:42753409-42753672(-)$1	1	138	143	14.9999
.....	chr8:124219391-124219664(+)$1	1	230	235	14.9999
))..)	chrX:141291461-141291721(-)$1	1	100	105	14.9999
..(((	chr12:48187071-48187424(-)$1	1	46	51	14.9999
.....	chr12:57919850-57920125(+)$1	1	6	11	14.9999
((((.	chr19:41858820-41859079(-)$1	1	52	57	14.9999
.....	chr12:125284619-125284888(-)$1	1	78	83	14.9999
(((..	chr6:30690239-30690472(+)$1	1	63	68	14.9999
(((((	chr6:31610547-31610843(-)$1	1	74	79	14.9999
...))	chr19:15354032-15354369(-)$1	1	181	186	14.9999
)....	chrX:153706160-153706449(-)$1	1	38	43	14.9999
.....	chr8:37730488-37730730(-)$1	1	77	82	14.9999
))...	chr1:40029245-40029507(-)$1	1	164	169	14.9999
)....	chr20:62152822-62153041(+)$1	1	135	140	14.9999
(((((	chr22:24108053-24108316(-)$1	1	88	93	14.9999
.))))	chr19:2247883-2248130(+)$1	1	153	158	14.9999
)....	chr12:132400842-132401097(+)$1	1	27	32	14.9999
.....	chr3:9879637-9879936(-)$1	1	83	88	14.9999

#PSSM
C : 0.90	c : 0.09	
C : 0.90	c : 0.09	
C : 0.90	c : 0.09	
C : 0.90	c : 0.09	
U : 0.90	u : 0.09	

#score	1109.9999999999995
#seq	74
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_transcript_m1_run2.nuc.txt

#NT
ucgguggcggcggccgcugcgg	chr21:47565647-47565899(-)$1	252	141	163	31.6097
gcggagggggcggcggcggcgg	chr7:2671511-2671814(+)$1	303	51	73	40.3902
GAGgccgccgccgccgcggccg	chr20:57465135-57465422(+)$1	287	169	191	27.3414
GUGGAGGCCGCAGCGGGUGCGG	chr9:136242772-136243050(-)$1	278	126	148	27.8292
gcggcggcggcggcggcggcgg	chr6:170123811-170124179(-)$1	368	59	81	46.0000
gccccggcggcggccgcgcccg	chr19:18391696-18391956(-)$1	260	208	230	29.2926
gccgggccugcggcggggccgg	chr17:16945976-16946284(+)$1	308	62	84	25.2682
gcgguggcggcggcggcggccg	chr6:149638899-149639149(+)$1	250	20	42	40.1463
gcggcggaggcggcggcggcgg	chr10:98346487-98346776(-)$1	289	102	124	43.0731
GCGCCGGGGGCAGCGAGGGCAG	chr17:79918704-79918978(-)$1	274	239	261	27.3414
GAGGAGGAGGCGGCGGCGGCGG	chr14:32546304-32546562(+)$1	258	230	252	37.5853
GCAGCGGCGGCAGCAGCACCAG	chr22:39916656-39916947(+)$1	291	40	62	25.6341
gcggcagcggcggcggcggcgg	chr18:19321232-19321519(+)$1	287	258	280	41.8536
gaagcggcgguagcggcggcgg	chr19:39138221-39138557(+)$1	336	76	98	32.8292
gcggcggcggcggcggcggcgg	chr6:157099936-157100207(+)$1	271	46	68	46.0000
ggggcggcggcggcggggggcg	chr2:236403051-236403335(+)$1	284	230	252	34.1707
GCGGCCGCCGAGGCCUCGGCGG	chr16:46918504-46918752(+)$1	248	201	223	28.6829
ccggccggggcggggggcgcgg	chrX:152953545-152953898(+)$1	353	21	43	25.7560
gcggcggcggcagcagaggcgg	chr16:24741076-24741299(+)$1	223	158	180	36.7317
gagccggcggcggcgccgcUGC	chr12:111180423-111180683(-)$1	260	125	147	24.2926
gaggaggaggaggcggcgacgg	chr17:42276862-42277120(-)$1	258	26	48	30.7560
GCAGCGGCAGCAGCAGCAgccg	chr2:161349864-161350143(-)$1	279	136	158	26.0000
ggggcgguagcggcggcgacgg	chr20:32581607-32581873(+)$1	266	171	193	32.5853
ccggUGGUAGCGGUGGCGGCAG	chr20:306874-307148(+)$1	274	73	95	25.0243
GAGGACGGGGAGGAGGAGGCCG	chr7:2697819-2698026(+)$1	207	110	132	21.2439
gcgccggggccugaggcggcgg	chr2:102314061-102314376(+)$1	315	179	201	27.0975
gaggcggcggcggcggcagcgg	chr1:27022878-27023116(+)$1	238	127	149	39.6585
gcggcgguggcggcggcguagg	chr17:79603841-79604146(-)$1	305	66	88	35.0243
CCGGCGGCCGAGGCAGAGGCGG	chr7:2394462-2394864(+)$1	402	301	323	29.7804
GCGGCGGCGGCUGGGAGCGCGU	chr6:163835949-163836179(+)$1	230	46	68	23.9268
ccgggggcggcggcggcggcug	chr19:55628673-55629013(-)$1	340	132	154	35.3902
gcggcggcgggggcgcgggccg	chr9:137218243-137218568(+)$1	325	3	25	34.2926
gcggaggcggaggcggggcugg	chr10:102759453-102759750(+)$1	297	97	119	30.8780
gcggcgggggcggcggcggcgg	chr2:231902347-231902591(+)$1	244	203	225	43.3170
UUGCCGGAGGCGGCGGGGGCGC	chr20:306279-306508(+)$1	229	60	82	25.6341
gcggcggcggcggcggcggcgg	chr16:72821480-72821761(-)$1	281	145	167	46.0000
gcggcgccgggggcgcgggggg	chr19:18391501-18391738(-)$1	237	48	70	28.3170
gcugcggccggggccggggccg	chr19:878825-879126(-)$1	301	172	194	27.8292
gcggcggcggcggcggcggugg	chr7:65338175-65338451(+)$1	276	49	71	42.0975
gaggcggcggcggcggcggcgg	chr1:1822225-1822534(-)$1	309	59	81	43.4390

#otherMatches

#Struct PSSM
eeebb]cccddddlllddddEE	chr1:231557671-231557940(-)$1	269	96	118	25.1463
22dddd22dddd]eeeee4444	chr21:47565647-47565899(-)$1	252	141	163	31.6097
[bb####bb[bb[a[ccc[a[b	chr7:2671511-2671814(+)$1	303	51	73	40.3902
!!ccc[bbdddd[bb[dddd[c	chr20:57465135-57465422(+)$1	287	169	191	27.3414
fffflllffffff]ffffff]c	chr9:136242772-136243050(-)$1	278	126	148	27.8292
bb[bb!!a!!bb[a!!ccc[cc	chr6:170123811-170124179(-)$1	368	59	81	46.0000
dd22=================3	chr19:18391696-18391956(-)$1	260	208	230	29.2926
2hhhhhhhhCCCGGGGGGGfff	chr17:16945976-16946284(+)$1	308	62	84	25.2682
$a[bb!!bb[a[bb[bb[eeee	chr6:149638899-149639149(+)$1	250	20	42	40.1463
{CCCCCC{JJJJJJJJJJJJJJ	chr10:98346487-98346776(-)$1	289	102	124	43.0731
::FFFFFF}BB:bb[cccrrrr	chr17:79918704-79918978(-)$1	274	239	261	27.3414
::::::::FFFFFF}BBYYDDD	chr14:32546304-32546562(+)$1	258	230	252	37.5853
qqqqqccc]a22bb]bb22eee	chr22:39916656-39916947(+)$1	291	40	62	25.6341
da666666dddd]ffffff]ii	chr18:19321232-19321519(+)$1	287	258	280	41.8536
"""bb!!a[bb!!dddd!!a[d	chr19:39138221-39138557(+)$1	336	76	98	32.8292
[bb[bbmmmmbb]bb]a]ccc]	chr6:157099936-157100207(+)$1	271	46	68	46.0000
]ddddffffffiiiiiiiii]f	chr2:236403051-236403335(+)$1	284	230	252	34.1707
ccddddnnnnndddd333ccc]	chr16:46918504-46918752(+)$1	248	201	223	28.6829
KDDDD{DDDD{A{JJJJJJJJJ	chrX:152953545-152953898(+)$1	353	21	43	25.7560
bbccc]hhhhhhhh333a]a]e	chr16:24741076-24741299(+)$1	223	158	180	36.7317
!!ccclllccc]eeeeeHHHHH	chr12:111180423-111180683(-)$1	260	125	147	24.2926
:::::::::::JJJJJJJJJJJ	chr17:42276862-42277120(-)$1	258	26	48	30.7560
cc[eeeee[bb[bb[bbmmmmb	chr2:161349864-161350143(-)$1	279	136	158	26.0000
========[ggggggg[bb[dd	chr20:32581607-32581873(+)$1	266	171	193	32.5853
Jggggggg!!a[eeeeefffff	chr20:306874-307148(+)$1	274	73	95	25.0243
fffffJJJJJJJJJJYYFFFFF	chr7:2697819-2698026(+)$1	207	110	132	21.2439
iiiiiiii::::IIIIIIIIIE	chr2:102314061-102314376(+)$1	315	179	201	27.0975
]dddd===========22ffff	chr1:27022878-27023116(+)$1	238	127	149	39.6585
#dddd[hhhhhhhh[bb####a	chr17:79603841-79604146(-)$1	305	66	88	35.0243
::ccc[cccqqqqqqqqccc]c	chr7:2394462-2394864(+)$1	402	301	323	29.7804
mdddd]bb::eeeee[ccc[ee	chr6:163835949-163836179(+)$1	230	46	68	23.9268
ffff]bba[bb[bb[hhhhhhh	chr19:55628673-55629013(-)$1	340	132	154	35.3902
==========a[ccc[ffffff	chr9:137218243-137218568(+)$1	325	3	25	34.2926
III}CCC}EEEEE}EEEEEEEE	chr10:102759453-102759750(+)$1	297	97	119	30.8780
dddd]a333iiiiiiiiieeee	chr2:231902347-231902591(+)$1	244	203	225	43.3170
lccc::a[===========&&&	chr20:306279-306508(+)$1	229	60	82	25.6341
bbmmmmbb]bb]bb]bb]bb]b	chr16:72821480-72821761(-)$1	281	145	167	46.0000
gggggg[ddddhhhhhhhh[dd	chr19:18391501-18391738(-)$1	237	48	70	28.3170
ddd[eeeee!!ddddqqqqqqq	chr19:878825-879126(-)$1	301	172	194	27.8292
cc!!a[bb[bb[bb[bbppppp	chr7:65338175-65338451(+)$1	276	49	71	42.0975
4444dddd:dddd!!bb[dddd	chr1:1822225-1822534(-)$1	309	59	81	43.4390

#DB
))))).)))((((...))))))	chr1:231557671-231557940(-)$1	1	96	118	25.1463
..))))..)))).)))))....	chr21:47565647-47565899(-)$1	1	141	163	31.6097
.((....((.((.(.(((.(.(	chr7:2671511-2671814(+)$1	1	51	73	40.3902
..(((.((((((.((.((((.(	chr20:57465135-57465422(+)$1	1	169	191	27.3414
((((...)))))).)))))).)	chr9:136242772-136243050(-)$1	1	126	148	27.8292
((.((..(..((.(..(((.((	chr6:170123811-170124179(-)$1	1	59	81	46.0000
))..))))))))))))))))).	chr19:18391696-18391956(-)$1	1	208	230	29.2926
.))))))))(((((((((((((	chr17:16945976-16946284(+)$1	1	62	84	25.2682
.(.((..((.(.((.((.((((	chr6:149638899-149639149(+)$1	1	20	42	40.1463
.((((((.((((((((((((((	chr10:98346487-98346776(-)$1	1	102	124	43.0731
..)))))).)).((.(((....	chr17:79918704-79918978(-)$1	1	239	261	27.3414
........)))))).))..)))	chr14:32546304-32546562(+)$1	1	230	252	37.5853
.....))).)..)).))..)))	chr22:39916656-39916947(+)$1	1	40	62	25.6341
))......)))).)))))).))	chr18:19321232-19321519(+)$1	1	258	280	41.8536
...((..(.((..((((..(.(	chr19:39138221-39138557(+)$1	1	76	98	32.8292
.((.((....)).)).).))).	chr6:157099936-157100207(+)$1	1	46	68	46.0000
.))))))))))))))))))).)	chr2:236403051-236403335(+)$1	1	230	252	34.1707
((((((.....))))...))).	chr16:46918504-46918752(+)$1	1	201	223	28.6829
.((((.((((.(.(((((((((	chrX:152953545-152953898(+)$1	1	21	43	25.7560
))))).))))))))...).).)	chr16:24741076-24741299(+)$1	1	158	180	36.7317
..(((...))).))))))))))	chr12:111180423-111180683(-)$1	1	125	147	24.2926
...........(((((((((((	chr17:42276862-42277120(-)$1	1	26	48	30.7560
((.(((((.((.((.((....)	chr2:161349864-161350143(-)$1	1	136	158	26.0000
((((((((.(((((((.((.((	chr20:32581607-32581873(+)$1	1	171	193	32.5853
((((((((..(.((((((((((	chr20:306874-307148(+)$1	1	73	95	25.0243
)))))))))))))))..)))))	chr7:2697819-2698026(+)$1	1	110	132	21.2439
))))))))....))))))))))	chr2:102314061-102314376(+)$1	1	179	201	27.0975
.)))))))))))))))..))))	chr1:27022878-27023116(+)$1	1	127	149	39.6585
.((((.((((((((.((....(	chr17:79603841-79604146(-)$1	1	66	88	35.0243
..(((.(((........))).)	chr7:2394462-2394864(+)$1	1	301	323	29.7804
.)))).))..(((((.(((.((	chr6:163835949-163836179(+)$1	1	46	68	23.9268
)))).))(.((.((.(((((((	chr19:55628673-55629013(-)$1	1	132	154	35.3902
(((((((((((.(((.((((((	chr9:137218243-137218568(+)$1	1	3	25	34.2926
))).))).))))).))))))))	chr10:102759453-102759750(+)$1	1	97	119	30.8780
)))).)...)))))))))))))	chr2:231902347-231902591(+)$1	1	203	225	43.3170
.)))..(.(((((((((((...	chr20:306279-306508(+)$1	1	60	82	25.6341
((....)).)).)).)).)).)	chr16:72821480-72821761(-)$1	1	145	167	46.0000
((((((.((((((((((((.((	chr19:18391501-18391738(-)$1	1	48	70	28.3170
(((.(((((..((((.......	chr19:878825-879126(-)$1	1	172	194	27.8292
((..(.((.((.((.((.....	chr7:65338175-65338451(+)$1	1	49	71	42.0975
....)))).((((..((.((((	chr1:1822225-1822534(-)$1	1	59	81	43.4390

#PSSM
g : 0.60	G : 0.24	c : 0.07	u : 0.02	C : 0.02	U : 0.02	
c : 0.53	C : 0.17	a : 0.12	A : 0.07	U : 0.04	g : 0.04	
g : 0.60	G : 0.24	c : 0.04	A : 0.04	a : 0.02	u : 0.02	
g : 0.65	G : 0.21	c : 0.07	C : 0.04	
c : 0.53	C : 0.19	a : 0.07	A : 0.07	u : 0.04	g : 0.04	U : 0.02	
g : 0.63	G : 0.21	c : 0.04	C : 0.04	U : 0.02	a : 0.02	
g : 0.65	G : 0.29	c : 0.04	
c : 0.51	C : 0.17	g : 0.09	a : 0.04	G : 0.04	A : 0.04	u : 0.04	U : 0.02	
g : 0.60	G : 0.14	C : 0.09	c : 0.04	A : 0.04	u : 0.02	a : 0.02	
g : 0.68	G : 0.29	c : 0.02	
c : 0.56	C : 0.19	A : 0.07	g : 0.07	a : 0.04	G : 0.02	u : 0.02	
g : 0.60	G : 0.14	A : 0.09	a : 0.04	C : 0.02	c : 0.02	u : 0.02	U : 0.02	
g : 0.70	G : 0.29	
c : 0.65	C : 0.21	g : 0.02	U : 0.02	A : 0.02	a : 0.02	G : 0.02	
g : 0.58	G : 0.17	c : 0.09	A : 0.07	U : 0.02	C : 0.02	a : 0.02	
g : 0.63	G : 0.21	c : 0.07	A : 0.04	U : 0.02	
c : 0.51	g : 0.17	C : 0.14	G : 0.09	A : 0.04	a : 0.02	
g : 0.63	G : 0.19	A : 0.04	u : 0.02	U : 0.02	c : 0.02	a : 0.02	C : 0.02	
g : 0.56	G : 0.21	c : 0.09	C : 0.04	a : 0.04	u : 0.02	
c : 0.58	C : 0.26	g : 0.04	u : 0.04	U : 0.02	a : 0.02	
g : 0.51	G : 0.19	c : 0.17	A : 0.07	C : 0.02	u : 0.02	
g : 0.70	G : 0.21	C : 0.04	U : 0.02	

#score	1345.2682926829295
#seq	41
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_UTR_m3_run1.nuc.txt

#NT
UUCU	chr20:57242434-57242715(+)$1	281	10	14	12.0000
UUCU	chr14:31177072-31177354(+)$1	282	102	106	12.0000
UUCU	chr6:111213248-111213507(+)$1	259	6	10	12.0000
UUCU	chr3:9965794-9966069(+)$1	275	37	41	12.0000
UUCU	chr3:195796303-195796549(-)$1	246	42	46	12.0000
UUCU	chr11:62570907-62571120(-)$1	213	58	62	12.0000
UUCU	chr19:11030405-11030681(+)$1	276	89	93	12.0000
UUCU	chr19:48245325-48245579(+)$1	254	36	40	12.0000
UUCU	chr8:110355523-110355775(+)$1	252	13	17	12.0000
UUCU	chr14:70237802-70238084(+)$1	282	89	93	12.0000
UUCU	chr16:258022-258303(-)$1	281	57	61	12.0000
UUCU	chr14:103801877-103802140(+)$1	263	91	95	12.0000
UUCU	chr19:54971833-54972094(+)$1	261	92	96	12.0000
UUCU	chr5:6605327-6605585(-)$1	258	151	155	12.0000
UUCU	chr18:9104016-9104280(+)$1	264	125	129	12.0000
UUCU	chr12:107177660-107177912(+)$1	252	220	224	12.0000
UUCU	chr5:65454930-65455216(+)$1	286	79	83	12.0000
UUCU	chr20:34294951-34295228(-)$1	277	87	91	12.0000
UUCU	chr1:211433334-211433600(+)$1	266	11	15	12.0000
UUCU	chr2:100024448-100024708(-)$1	260	0	4	12.0000
UUCU	chr17:73236339-73236607(-)$1	268	84	88	12.0000
UUCU	chr17:48829435-48829725(+)$1	290	59	63	12.0000
UUCU	chr4:99955239-99955535(+)$1	296	101	105	12.0000
UUCU	chr11:95511954-95512234(-)$1	280	73	77	12.0000
UUCU	chr7:104678460-104678707(+)$1	247	106	110	12.0000
UUCU	chr12:109094948-109095210(-)$1	262	18	22	12.0000
UUCU	chr1:155884288-155884510(-)$1	222	10	14	12.0000
UUCU	chr12:56151191-56151454(-)$1	263	11	15	12.0000
UUCU	chr7:77236441-77236705(+)$1	264	5	9	12.0000
UUCU	chr21:35475663-35475944(+)$1	281	28	32	12.0000
UUCU	chr3:57562948-57563227(-)$1	279	10	14	12.0000
UUCU	chr3:138373510-138373768(-)$1	258	81	85	12.0000
UUCU	chr21:34823008-34823289(-)$1	281	61	65	12.0000
UUCU	chr2:39519835-39520071(-)$1	236	35	39	12.0000
UUCU	chr18:10546213-10546465(+)$1	252	91	95	12.0000
UUCU	chr17:77770209-77770454(-)$1	245	53	57	12.0000
UUCU	chr16:87874627-87874878(-)$1	251	47	51	12.0000
UUCU	chr4:140037816-140038072(-)$1	256	34	38	12.0000
UUCU	chrX:154009477-154009731(-)$1	254	97	101	12.0000
UUCU	chr15:93543628-93543879(+)$1	251	1	5	12.0000
UUCU	chr11:9599239-9599503(+)$1	264	9	13	12.0000
UUCU	chr10:70515900-70516146(+)$1	246	6	10	12.0000
UUCU	chr17:46651258-46651473(-)$1	215	49	53	12.0000
UUCU	chr17:26910502-26910779(-)$1	277	19	23	12.0000
UUCU	chr12:123641311-123641570(-)$1	259	81	85	12.0000
UUCU	chr4:68374673-68374937(-)$1	264	130	134	12.0000
UUCU	chr20:62559581-62559867(+)$1	286	5	9	12.0000
UUCU	chr12:53415379-53415649(+)$1	270	123	127	12.0000
UUCU	chr15:44159257-44159500(+)$1	243	17	21	12.0000
UUCU	chr17:57915592-57915841(+)$1	249	14	18	12.0000
UUCU	chr1:151611250-151611533(+)$1	283	72	76	12.0000
UUCU	chr1:155718034-155718305(+)$1	271	92	96	12.0000
UUCU	chr15:58891775-58892035(-)$1	260	23	27	12.0000
UUCU	chr4:26387865-26388123(+)$1	258	49	53	12.0000
UUCU	chr10:70136634-70136902(-)$1	268	2	6	12.0000
UUCU	chr12:32893226-32893492(+)$1	266	195	199	12.0000
UUCU	chr9:71863460-71863740(+)$1	280	28	32	12.0000
UUCU	chr7:86822407-86822671(+)$1	264	228	232	12.0000
UUCU	chr1:67518534-67518790(-)$1	256	83	87	12.0000
UUCU	chr14:31169276-31169537(+)$1	261	147	151	12.0000
UUCU	chr3:42672553-42672813(+)$1	260	86	90	12.0000
UUCU	chr13:111545156-111545400(-)$1	244	69	73	12.0000
UUCU	chr8:41468144-41468426(+)$1	282	53	57	12.0000
UUCU	chr2:178086852-178087096(+)$1	244	117	121	12.0000
UUCU	chr10:75559649-75559884(+)$1	235	100	104	12.0000
UUCU	chr14:23794264-23794515(+)$1	251	21	25	12.0000
UUCU	chr5:32143824-32144095(-)$1	271	40	44	12.0000
UUCU	chr14:35871106-35871377(-)$1	271	218	222	12.0000
UUCU	chr2:198284881-198285151(-)$1	270	4	8	12.0000
UUCU	chr10:70516939-70517186(+)$1	247	91	95	12.0000
UUCU	chr15:62159997-62160265(-)$1	268	27	31	12.0000
UUCU	chr1:155885510-155885749(-)$1	239	147	151	12.0000
UUCU	chr12:124071182-124071386(+)$1	204	17	21	12.0000
UUCU	chr11:243914-244198(+)$1	284	41	45	12.0000
UUCU	chr18:44407934-44408206(-)$1	272	99	103	12.0000
UUCU	chr3:141634701-141634959(+)$1	258	97	101	12.0000
UUCU	chr17:74731084-74731351(-)$1	267	3	7	12.0000
UUCU	chr11:3774515-3774753(-)$1	238	98	102	12.0000
UUCU	chr16:81015350-81015606(-)$1	256	111	115	12.0000
UUCU	chr15:93492284-93492531(+)$1	247	59	63	12.0000
UUCU	chr1:44443539-44443805(+)$1	266	44	48	12.0000
UUCU	chr11:3765729-3765981(-)$1	252	65	69	12.0000
UUCU	chr1:76255727-76255984(+)$1	257	35	39	12.0000
UUCU	chr9:132575595-132575855(-)$1	260	31	35	12.0000
UUCU	chr3:142747134-142747348(+)$1	214	48	52	12.0000

#otherMatches

#Struct PSSM
GG::	chr1:213173567-213173837(-)$1	270	11	15	12.0000
EEEE	chr20:57242434-57242715(+)$1	281	10	14	12.0000
gggg	chr14:31177072-31177354(+)$1	282	102	106	12.0000
GGGG	chr6:111213248-111213507(+)$1	259	6	10	12.0000
lccc	chr3:9965794-9966069(+)$1	275	37	41	12.0000
d"""	chr3:195796303-195796549(-)$1	246	42	46	12.0000
GGGG	chr11:62570907-62571120(-)$1	213	58	62	12.0000
::::	chr19:11030405-11030681(+)$1	276	89	93	12.0000
::::	chr19:48245325-48245579(+)$1	254	36	40	12.0000
OEEE	chr8:110355523-110355775(+)$1	252	13	17	12.0000
ffff	chr14:70237802-70238084(+)$1	282	89	93	12.0000
fffE	chr16:258022-258303(-)$1	281	57	61	12.0000
gg[g	chr14:103801877-103802140(+)$1	263	91	95	12.0000
::::	chr19:54971833-54972094(+)$1	261	92	96	12.0000
llcc	chr5:6605327-6605585(-)$1	258	151	155	12.0000
dddd	chr18:9104016-9104280(+)$1	264	125	129	12.0000
ccc2	chr12:107177660-107177912(+)$1	252	220	224	12.0000
GLLL	chr5:65454930-65455216(+)$1	286	79	83	12.0000
55cc	chr20:34294951-34295228(-)$1	277	87	91	12.0000
eeee	chr1:211433334-211433600(+)$1	266	11	15	12.0000
::AK	chr2:100024448-100024708(-)$1	260	0	4	12.0000
::::	chr17:73236339-73236607(-)$1	268	84	88	12.0000
yyyy	chr17:48829435-48829725(+)$1	290	59	63	12.0000
ffff	chr4:99955239-99955535(+)$1	296	101	105	12.0000
CCCC	chr11:95511954-95512234(-)$1	280	73	77	12.0000
[ccc	chr7:104678460-104678707(+)$1	247	106	110	12.0000
!!cc	chr12:109094948-109095210(-)$1	262	18	22	12.0000
J:::	chr1:155884288-155884510(-)$1	222	10	14	12.0000
::::	chr12:56151191-56151454(-)$1	263	11	15	12.0000
ccc!	chr7:77236441-77236705(+)$1	264	5	9	12.0000
oooo	chr21:35475663-35475944(+)$1	281	28	32	12.0000
qqqq	chr3:57562948-57563227(-)$1	279	10	14	12.0000
fooo	chr3:138373510-138373768(-)$1	258	81	85	12.0000
dddd	chr21:34823008-34823289(-)$1	281	61	65	12.0000
JJJJ	chr2:39519835-39520071(-)$1	236	35	39	12.0000
mmmm	chr18:10546213-10546465(+)$1	252	91	95	12.0000
i333	chr17:77770209-77770454(-)$1	245	53	57	12.0000
JJJJ	chr16:87874627-87874878(-)$1	251	47	51	12.0000
f###	chr4:140037816-140038072(-)$1	256	34	38	12.0000
3bbd	chrX:154009477-154009731(-)$1	254	97	101	12.0000
::::	chr15:93543628-93543879(+)$1	251	1	5	12.0000
eemm	chr11:9599239-9599503(+)$1	264	9	13	12.0000
IIII	chr10:70515900-70516146(+)$1	246	6	10	12.0000
333g	chr17:46651258-46651473(-)$1	215	49	53	12.0000
:::I	chr17:26910502-26910779(-)$1	277	19	23	12.0000
&ccc	chr12:123641311-123641570(-)$1	259	81	85	12.0000
eeee	chr4:68374673-68374937(-)$1	264	130	134	12.0000
::::	chr20:62559581-62559867(+)$1	286	5	9	12.0000
fff"	chr12:53415379-53415649(+)$1	270	123	127	12.0000
:III	chr15:44159257-44159500(+)$1	243	17	21	12.0000
WWWW	chr17:57915592-57915841(+)$1	249	14	18	12.0000
iiii	chr1:151611250-151611533(+)$1	283	72	76	12.0000
xxxx	chr1:155718034-155718305(+)$1	271	92	96	12.0000
ee[b	chr15:58891775-58892035(-)$1	260	23	27	12.0000
FFF{	chr4:26387865-26388123(+)$1	258	49	53	12.0000
CLLL	chr10:70136634-70136902(-)$1	268	2	6	12.0000
3ddd	chr12:32893226-32893492(+)$1	266	195	199	12.0000
e:::	chr9:71863460-71863740(+)$1	280	28	32	12.0000
dd::	chr7:86822407-86822671(+)$1	264	228	232	12.0000
oooo	chr1:67518534-67518790(-)$1	256	83	87	12.0000
::::	chr14:31169276-31169537(+)$1	261	147	151	12.0000
5555	chr3:42672553-42672813(+)$1	260	86	90	12.0000
]ggg	chr13:111545156-111545400(-)$1	244	69	73	12.0000
cnnn	chr8:41468144-41468426(+)$1	282	53	57	12.0000
:::c	chr2:178086852-178087096(+)$1	244	117	121	12.0000
33cc	chr10:75559649-75559884(+)$1	235	100	104	12.0000
==bb	chr14:23794264-23794515(+)$1	251	21	25	12.0000
ee[b	chr5:32143824-32144095(-)$1	271	40	44	12.0000
gggg	chr14:35871106-35871377(-)$1	271	218	222	12.0000
dddd	chr2:198284881-198285151(-)$1	270	4	8	12.0000
hhhh	chr10:70516939-70517186(+)$1	247	91	95	12.0000
^^^^	chr15:62159997-62160265(-)$1	268	27	31	12.0000
====	chr1:155885510-155885749(-)$1	239	147	151	12.0000
oooo	chr12:124071182-124071386(+)$1	204	17	21	12.0000
ceee	chr11:243914-244198(+)$1	284	41	45	12.0000
oooo	chr18:44407934-44408206(-)$1	272	99	103	12.0000
hhhh	chr3:141634701-141634959(+)$1	258	97	101	12.0000
:::e	chr17:74731084-74731351(-)$1	267	3	7	12.0000
iiii	chr11:3774515-3774753(-)$1	238	98	102	12.0000
!!ee	chr16:81015350-81015606(-)$1	256	111	115	12.0000
ee:d	chr15:93492284-93492531(+)$1	247	59	63	12.0000
:::h	chr1:44443539-44443805(+)$1	266	44	48	12.0000
cccc	chr11:3765729-3765981(-)$1	252	65	69	12.0000
E{EE	chr1:76255727-76255984(+)$1	257	35	39	12.0000
####	chr9:132575595-132575855(-)$1	260	31	35	12.0000
cbbo	chr3:142747134-142747348(+)$1	214	48	52	12.0000

#DB
((..	chr1:213173567-213173837(-)$1	1	11	15	12.0000
((((	chr20:57242434-57242715(+)$1	1	10	14	12.0000
))))	chr14:31177072-31177354(+)$1	1	102	106	12.0000
((((	chr6:111213248-111213507(+)$1	1	6	10	12.0000
.)))	chr3:9965794-9966069(+)$1	1	37	41	12.0000
(...	chr3:195796303-195796549(-)$1	1	42	46	12.0000
((((	chr11:62570907-62571120(-)$1	1	58	62	12.0000
....	chr19:11030405-11030681(+)$1	1	89	93	12.0000
....	chr19:48245325-48245579(+)$1	1	36	40	12.0000
.(((	chr8:110355523-110355775(+)$1	1	13	17	12.0000
((((	chr14:70237802-70238084(+)$1	1	89	93	12.0000
)))(	chr16:258022-258303(-)$1	1	57	61	12.0000
((.(	chr14:103801877-103802140(+)$1	1	91	95	12.0000
....	chr19:54971833-54972094(+)$1	1	92	96	12.0000
..))	chr5:6605327-6605585(-)$1	1	151	155	12.0000
((((	chr18:9104016-9104280(+)$1	1	125	129	12.0000
))).	chr12:107177660-107177912(+)$1	1	220	224	12.0000
(...	chr5:65454930-65455216(+)$1	1	79	83	12.0000
..))	chr20:34294951-34295228(-)$1	1	87	91	12.0000
((((	chr1:211433334-211433600(+)$1	1	11	15	12.0000
..(.	chr2:100024448-100024708(-)$1	1	0	4	12.0000
....	chr17:73236339-73236607(-)$1	1	84	88	12.0000
....	chr17:48829435-48829725(+)$1	1	59	63	12.0000
((((	chr4:99955239-99955535(+)$1	1	101	105	12.0000
((((	chr11:95511954-95512234(-)$1	1	73	77	12.0000
.(((	chr7:104678460-104678707(+)$1	1	106	110	12.0000
..((	chr12:109094948-109095210(-)$1	1	18	22	12.0000
(...	chr1:155884288-155884510(-)$1	1	10	14	12.0000
....	chr12:56151191-56151454(-)$1	1	11	15	12.0000
(((.	chr7:77236441-77236705(+)$1	1	5	9	12.0000
....	chr21:35475663-35475944(+)$1	1	28	32	12.0000
....	chr3:57562948-57563227(-)$1	1	10	14	12.0000
(...	chr3:138373510-138373768(-)$1	1	81	85	12.0000
))))	chr21:34823008-34823289(-)$1	1	61	65	12.0000
((((	chr2:39519835-39520071(-)$1	1	35	39	12.0000
....	chr18:10546213-10546465(+)$1	1	91	95	12.0000
)...	chr17:77770209-77770454(-)$1	1	53	57	12.0000
((((	chr16:87874627-87874878(-)$1	1	47	51	12.0000
(...	chr4:140037816-140038072(-)$1	1	34	38	12.0000
.)))	chrX:154009477-154009731(-)$1	1	97	101	12.0000
....	chr15:93543628-93543879(+)$1	1	1	5	12.0000
((..	chr11:9599239-9599503(+)$1	1	9	13	12.0000
((((	chr10:70515900-70516146(+)$1	1	6	10	12.0000
...)	chr17:46651258-46651473(-)$1	1	49	53	12.0000
...(	chr17:26910502-26910779(-)$1	1	19	23	12.0000
.(((	chr12:123641311-123641570(-)$1	1	81	85	12.0000
((((	chr4:68374673-68374937(-)$1	1	130	134	12.0000
....	chr20:62559581-62559867(+)$1	1	5	9	12.0000
(((.	chr12:53415379-53415649(+)$1	1	123	127	12.0000
.(((	chr15:44159257-44159500(+)$1	1	17	21	12.0000
....	chr17:57915592-57915841(+)$1	1	14	18	12.0000
))))	chr1:151611250-151611533(+)$1	1	72	76	12.0000
....	chr1:155718034-155718305(+)$1	1	92	96	12.0000
((.(	chr15:58891775-58892035(-)$1	1	23	27	12.0000
(((.	chr4:26387865-26388123(+)$1	1	49	53	12.0000
(...	chr10:70136634-70136902(-)$1	1	2	6	12.0000
.)))	chr12:32893226-32893492(+)$1	1	195	199	12.0000
)...	chr9:71863460-71863740(+)$1	1	28	32	12.0000
))..	chr7:86822407-86822671(+)$1	1	228	232	12.0000
....	chr1:67518534-67518790(-)$1	1	83	87	12.0000
....	chr14:31169276-31169537(+)$1	1	147	151	12.0000
....	chr3:42672553-42672813(+)$1	1	86	90	12.0000
.)))	chr13:111545156-111545400(-)$1	1	69	73	12.0000
(...	chr8:41468144-41468426(+)$1	1	53	57	12.0000
...(	chr2:178086852-178087096(+)$1	1	117	121	12.0000
..))	chr10:75559649-75559884(+)$1	1	100	104	12.0000
((((	chr14:23794264-23794515(+)$1	1	21	25	12.0000
((.(	chr5:32143824-32144095(-)$1	1	40	44	12.0000
((((	chr14:35871106-35871377(-)$1	1	218	222	12.0000
((((	chr2:198284881-198285151(-)$1	1	4	8	12.0000
((((	chr10:70516939-70517186(+)$1	1	91	95	12.0000
....	chr15:62159997-62160265(-)$1	1	27	31	12.0000
))))	chr1:155885510-155885749(-)$1	1	147	151	12.0000
....	chr12:124071182-124071386(+)$1	1	17	21	12.0000
((((	chr11:243914-244198(+)$1	1	41	45	12.0000
....	chr18:44407934-44408206(-)$1	1	99	103	12.0000
((((	chr3:141634701-141634959(+)$1	1	97	101	12.0000
...(	chr17:74731084-74731351(-)$1	1	3	7	12.0000
))))	chr11:3774515-3774753(-)$1	1	98	102	12.0000
..((	chr16:81015350-81015606(-)$1	1	111	115	12.0000
)).(	chr15:93492284-93492531(+)$1	1	59	63	12.0000
...(	chr1:44443539-44443805(+)$1	1	44	48	12.0000
))))	chr11:3765729-3765981(-)$1	1	65	69	12.0000
(.((	chr1:76255727-76255984(+)$1	1	35	39	12.0000
....	chr9:132575595-132575855(-)$1	1	31	35	12.0000
(((.	chr3:142747134-142747348(+)$1	1	48	52	12.0000

#PSSM
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_UTR_m3_run1.nuc.txt

#NT
UUUG	chr10:24834819-24835125(+)$1	306	184	188	11.9999
UUUG	chr1:47143910-47144181(-)$1	271	161	165	11.9999
UUUG	chr11:96075369-96075600(-)$1	231	128	132	11.9999
UUUG	chr22:43266371-43266629(-)$1	258	30	34	11.9999
UUUG	chr3:113163598-113163880(-)$1	282	43	47	11.9999
UUUG	chr9:95476530-95476775(-)$1	245	158	162	11.9999
UUUG	chr2:32536506-32536788(+)$1	282	58	62	11.9999
UUUG	chr12:125585654-125585955(+)$1	301	5	9	11.9999
UUUG	chr15:50896844-50897086(-)$1	242	39	43	11.9999
UUUG	chr13:33090954-33091217(-)$1	263	37	41	11.9999
UUUG	chr2:101634551-101634807(+)$1	256	140	144	11.9999
UUUG	chr1:160184899-160185174(+)$1	275	13	17	11.9999
UUUG	chr4:110685400-110685683(-)$1	283	40	44	11.9999
uuug	chr5:148884601-148884829(-)$1	228	23	27	11.9999
UUUG	chr1:33474690-33474956(-)$1	266	89	93	11.9999
UUUG	chr3:141669359-141669629(-)$1	270	171	175	11.9999
UUUG	chr2:182781179-182781456(+)$1	277	268	272	11.9999
UUUG	chr10:134143628-134143948(-)$1	320	154	158	11.9999
UUUG	chr19:57323544-57323810(-)$1	266	78	82	11.9999
UUUG	chr10:116735633-116735932(+)$1	299	201	205	11.9999
UUUG	chr4:73941076-73941322(-)$1	246	18	22	11.9999
UUUG	chr7:140424876-140425187(-)$1	311	2	6	11.9999
UUUG	chr5:14488417-14488687(+)$1	270	137	141	11.9999
uuug	chr8:59362996-59363324(+)$1	328	244	248	11.9999
UUUG	chr2:55254496-55254784(-)$1	288	85	89	11.9999
UUUG	chr12:54678094-54678326(+)$1	232	22	26	11.9999
UUUG	chr3:149684116-149684376(-)$1	260	11	15	11.9999
uuug	chr11:43776422-43776703(+)$1	281	91	95	11.9999
UUUG	chr11:70211903-70212186(+)$1	283	5	9	11.9999
UUUG	chr1:67473473-67473744(-)$1	271	203	207	11.9999
UUUG	chr11:2150294-2150501(-)$1	207	43	47	11.9999
UUUG	chr5:148884573-148884799(-)$1	226	41	45	11.9999
UUUG	chr2:179971114-179971363(-)$1	249	20	24	11.9999
UUUG	chr9:86584428-86584698(-)$1	270	198	202	11.9999
UUUG	chr4:107168880-107169164(-)$1	284	90	94	11.9999
UUUG	chr5:14488720-14488969(+)$1	249	40	44	11.9999
UUUG	chr5:148884426-148884669(-)$1	243	48	52	11.9999
UUUG	chr9:115449122-115449398(-)$1	276	5	9	11.9999
UUUG	chr6:108365427-108365807(-)$1	380	0	4	11.9999
UUUG	chr6:163995061-163995312(+)$1	251	33	37	11.9999
UUUG	chr3:123675144-123675437(-)$1	293	83	87	11.9999
UUUG	chr5:14488553-14488823(+)$1	270	1	5	11.9999
UUUG	chr2:101622004-101622340(+)$1	336	134	138	11.9999
UUUG	chr16:69737687-69737957(+)$1	270	34	38	11.9999
uuug	chr2:149449615-149449937(+)$1	322	29	33	11.9999
UUUG	chr12:32520433-32520718(+)$1	285	135	139	11.9999
UUUG	chr16:68172586-68172888(+)$1	302	103	107	11.9999
UUUG	chr14:21491141-21491443(-)$1	302	58	62	11.9999
UUUG	chr1:2336934-2337218(-)$1	284	124	128	11.9999
UUUG	chr16:20745560-20745836(+)$1	276	13	17	11.9999
UUUG	chrX:70794344-70794567(+)$1	223	162	166	11.9999
UUUG	chr13:98017253-98017513(+)$1	260	58	62	11.9999
UUUG	chr3:178954096-178954382(+)$1	286	50	54	11.9999
UUUG	chr16:47497606-47497849(+)$1	243	100	104	11.9999
UUUG	chr11:2151505-2151757(-)$1	252	94	98	11.9999
UUUG	chr4:186598538-186598812(-)$1	274	61	65	11.9999
uuug	chr2:149449310-149449556(+)$1	246	14	18	11.9999
UUUG	chr18:32918445-32918685(-)$1	240	79	83	11.9999
UUUG	chr15:50895989-50896296(-)$1	307	38	42	11.9999
UUUG	chr4:110685483-110685710(-)$1	227	67	71	11.9999
uuug	chr1:241795034-241795292(-)$1	258	16	20	11.9999
UUUG	chr1:150117244-150117521(+)$1	277	52	56	11.9999
UUUG	chr7:139246412-139246637(-)$1	225	184	188	11.9999
UUUG	chr7:155573169-155573534(+)$1	365	72	76	11.9999
UUUG	chr11:2150254-2150478(-)$1	224	20	24	11.9999
UUUG	chr20:3904640-3904926(+)$1	286	241	245	11.9999
UUUG	chr9:108153137-108153390(+)$1	253	76	80	11.9999
UUUG	chr1:156213332-156213619(-)$1	287	174	178	11.9999
UUUG	chr3:176741476-176741710(-)$1	234	113	117	11.9999
UUUG	chr3:183888957-183889196(+)$1	239	78	82	11.9999
UUUG	chr3:170714341-170714637(-)$1	296	81	85	11.9999
UUUG	chr6:52269527-52269788(+)$1	261	7	11	11.9999
UUUG	chr10:93622986-93623240(+)$1	254	159	163	11.9999
UUUG	chr10:93622949-93623186(+)$1	237	196	200	11.9999
UUUG	chr13:99101837-99102099(+)$1	262	86	90	11.9999
UUUG	chr14:97001054-97001318(+)$1	264	138	142	11.9999
UUUG	chr7:139246366-139246612(-)$1	246	159	163	11.9999
uuug	chr4:140339785-140340061(+)$1	276	234	238	11.9999
UUUG	chr14:21461921-21462205(+)$1	284	193	197	11.9999
UUUG	chr1:162492352-162492601(+)$1	249	152	156	11.9999
UUUG	chr9:36339332-36339615(-)$1	283	103	107	11.9999
UUUG	chr17:55758750-55759055(+)$1	305	15	19	11.9999
UUUG	chr7:131175885-131176164(+)$1	279	15	19	11.9999
UUUG	chr17:29701694-29701972(+)$1	278	271	275	11.9999
uuug	chr17:64804150-64804510(+)$1	360	274	278	11.9999
UUUG	chr7:86792336-86792594(+)$1	258	224	228	11.9999
UUUG	chr2:135816327-135816580(+)$1	253	14	18	11.9999
UUUG	chr14:21927716-21928003(-)$1	287	55	59	11.9999
UUUG	chr16:88928554-88928833(+)$1	279	20	24	11.9999

#otherMatches

#Struct PSSM
ffff	chr10:104390902-104391239(+)$1	337	92	96	11.9999
f!!b	chr10:24834819-24835125(+)$1	306	184	188	11.9999
eeee	chr1:47143910-47144181(-)$1	271	161	165	11.9999
9999	chr11:96075369-96075600(-)$1	231	128	132	11.9999
IIII	chr22:43266371-43266629(-)$1	258	30	34	11.9999
JJJJ	chr3:113163598-113163880(-)$1	282	43	47	11.9999
iiii	chr9:95476530-95476775(-)$1	245	158	162	11.9999
ggg[	chr2:32536506-32536788(+)$1	282	58	62	11.9999
FKKC	chr12:125585654-125585955(+)$1	301	5	9	11.9999
DDDD	chr15:50896844-50897086(-)$1	242	39	43	11.9999
]eee	chr13:33090954-33091217(-)$1	263	37	41	11.9999
dd]d	chr2:101634551-101634807(+)$1	256	140	144	11.9999
pppf	chr1:160184899-160185174(+)$1	275	13	17	11.9999
FFFF	chr4:110685400-110685683(-)$1	283	40	44	11.9999
=ooo	chr5:148884601-148884829(-)$1	228	23	27	11.9999
ffff	chr1:33474690-33474956(-)$1	266	89	93	11.9999
pppe	chr3:141669359-141669629(-)$1	270	171	175	11.9999
::::	chr2:182781179-182781456(+)$1	277	268	272	11.9999
gggg	chr10:134143628-134143948(-)$1	320	154	158	11.9999
eppp	chr19:57323544-57323810(-)$1	266	78	82	11.9999
GGG}	chr10:116735633-116735932(+)$1	299	201	205	11.9999
::II	chr4:73941076-73941322(-)$1	246	18	22	11.9999
:eee	chr7:140424876-140425187(-)$1	311	2	6	11.9999
hhhc	chr5:14488417-14488687(+)$1	270	137	141	11.9999
====	chr8:59362996-59363324(+)$1	328	244	248	11.9999
33dd	chr2:55254496-55254784(-)$1	288	85	89	11.9999
nnna	chr12:54678094-54678326(+)$1	232	22	26	11.9999
fff"	chr3:149684116-149684376(-)$1	260	11	15	11.9999
====	chr11:43776422-43776703(+)$1	281	91	95	11.9999
::::	chr11:70211903-70212186(+)$1	283	5	9	11.9999
eeoo	chr1:67473473-67473744(-)$1	271	203	207	11.9999
ee^^	chr11:2150294-2150501(-)$1	207	43	47	11.9999
JJJJ	chr5:148884573-148884799(-)$1	226	41	45	11.9999
mmee	chr2:179971114-179971363(-)$1	249	20	24	11.9999
qqqd	chr9:86584428-86584698(-)$1	270	198	202	11.9999
====	chr4:107168880-107169164(-)$1	284	90	94	11.9999
nnnc	chr5:14488720-14488969(+)$1	249	40	44	11.9999
c22a	chr5:148884426-148884669(-)$1	243	48	52	11.9999
HHH{	chr9:115449122-115449398(-)$1	276	5	9	11.9999
:eee	chr6:108365427-108365807(-)$1	380	0	4	11.9999
eenn	chr6:163995061-163995312(+)$1	251	33	37	11.9999
g:::	chr3:123675144-123675437(-)$1	293	83	87	11.9999
::::	chr5:14488553-14488823(+)$1	270	1	5	11.9999
ffff	chr2:101622004-101622340(+)$1	336	134	138	11.9999
oood	chr16:69737687-69737957(+)$1	270	34	38	11.9999
gggg	chr2:149449615-149449937(+)$1	322	29	33	11.9999
^^^c	chr12:32520433-32520718(+)$1	285	135	139	11.9999
:ccc	chr16:68172586-68172888(+)$1	302	103	107	11.9999
JJJJ	chr14:21491141-21491443(-)$1	302	58	62	11.9999
gggg	chr1:2336934-2337218(-)$1	284	124	128	11.9999
F::a	chr16:20745560-20745836(+)$1	276	13	17	11.9999
^^dd	chrX:70794344-70794567(+)$1	223	162	166	11.9999
::ff	chr13:98017253-98017513(+)$1	260	58	62	11.9999
gggg	chr3:178954096-178954382(+)$1	286	50	54	11.9999
pppp	chr16:47497606-47497849(+)$1	243	100	104	11.9999
qqqq	chr11:2151505-2151757(-)$1	252	94	98	11.9999
hhhc	chr4:186598538-186598812(-)$1	274	61	65	11.9999
qqqq	chr2:149449310-149449556(+)$1	246	14	18	11.9999
::::	chr18:32918445-32918685(-)$1	240	79	83	11.9999
DDDD	chr15:50895989-50896296(-)$1	307	38	42	11.9999
pppb	chr4:110685483-110685710(-)$1	227	67	71	11.9999
::EE	chr1:241795034-241795292(-)$1	258	16	20	11.9999
mmmc	chr1:150117244-150117521(+)$1	277	52	56	11.9999
FFFY	chr7:139246412-139246637(-)$1	225	184	188	11.9999
dd[c	chr7:155573169-155573534(+)$1	365	72	76	11.9999
EEEP	chr11:2150254-2150478(-)$1	224	20	24	11.9999
lllf	chr20:3904640-3904926(+)$1	286	241	245	11.9999
eeee	chr9:108153137-108153390(+)$1	253	76	80	11.9999
$$$b	chr1:156213332-156213619(-)$1	287	174	178	11.9999
hhhh	chr3:176741476-176741710(-)$1	234	113	117	11.9999
eeee	chr3:183888957-183889196(+)$1	239	78	82	11.9999
:::d	chr3:170714341-170714637(-)$1	296	81	85	11.9999
gggg	chr6:52269527-52269788(+)$1	261	7	11	11.9999
22ff	chr10:93622986-93623240(+)$1	254	159	163	11.9999
22ff	chr10:93622949-93623186(+)$1	237	196	200	11.9999
eeeq	chr13:99101837-99102099(+)$1	262	86	90	11.9999
e!!f	chr14:97001054-97001318(+)$1	264	138	142	11.9999
FFFY	chr7:139246366-139246612(-)$1	246	159	163	11.9999
oooe	chr4:140339785-140340061(+)$1	276	234	238	11.9999
ufff	chr14:21461921-21462205(+)$1	284	193	197	11.9999
oobb	chr1:162492352-162492601(+)$1	249	152	156	11.9999
EEE{	chr9:36339332-36339615(-)$1	283	103	107	11.9999
ccc[	chr17:55758750-55759055(+)$1	305	15	19	11.9999
D:hh	chr7:131175885-131176164(+)$1	279	15	19	11.9999
e22c	chr17:29701694-29701972(+)$1	278	271	275	11.9999
2iii	chr17:64804150-64804510(+)$1	360	274	278	11.9999
CCC:	chr7:86792336-86792594(+)$1	258	224	228	11.9999
[ddd	chr2:135816327-135816580(+)$1	253	14	18	11.9999
:::b	chr14:21927716-21928003(-)$1	287	55	59	11.9999
hhhh	chr16:88928554-88928833(+)$1	279	20	24	11.9999

#DB
))))	chr10:104390902-104391239(+)$1	1	92	96	11.9999
(..(	chr10:24834819-24835125(+)$1	1	184	188	11.9999
))))	chr1:47143910-47144181(-)$1	1	161	165	11.9999
....	chr11:96075369-96075600(-)$1	1	128	132	11.9999
((((	chr22:43266371-43266629(-)$1	1	30	34	11.9999
((((	chr3:113163598-113163880(-)$1	1	43	47	11.9999
))))	chr9:95476530-95476775(-)$1	1	158	162	11.9999
(((.	chr2:32536506-32536788(+)$1	1	58	62	11.9999
(..(	chr12:125585654-125585955(+)$1	1	5	9	11.9999
((((	chr15:50896844-50897086(-)$1	1	39	43	11.9999
.)))	chr13:33090954-33091217(-)$1	1	37	41	11.9999
)).)	chr2:101634551-101634807(+)$1	1	140	144	11.9999
...)	chr1:160184899-160185174(+)$1	1	13	17	11.9999
((((	chr4:110685400-110685683(-)$1	1	40	44	11.9999
(...	chr5:148884601-148884829(-)$1	1	23	27	11.9999
))))	chr1:33474690-33474956(-)$1	1	89	93	11.9999
...)	chr3:141669359-141669629(-)$1	1	171	175	11.9999
....	chr2:182781179-182781456(+)$1	1	268	272	11.9999
))))	chr10:134143628-134143948(-)$1	1	154	158	11.9999
(...	chr19:57323544-57323810(-)$1	1	78	82	11.9999
))).	chr10:116735633-116735932(+)$1	1	201	205	11.9999
..((	chr4:73941076-73941322(-)$1	1	18	22	11.9999
.(((	chr7:140424876-140425187(-)$1	1	2	6	11.9999
((((	chr5:14488417-14488687(+)$1	1	137	141	11.9999
((((	chr8:59362996-59363324(+)$1	1	244	248	11.9999
..))	chr2:55254496-55254784(-)$1	1	85	89	11.9999
...)	chr12:54678094-54678326(+)$1	1	22	26	11.9999
(((.	chr3:149684116-149684376(-)$1	1	11	15	11.9999
))))	chr11:43776422-43776703(+)$1	1	91	95	11.9999
....	chr11:70211903-70212186(+)$1	1	5	9	11.9999
((..	chr1:67473473-67473744(-)$1	1	203	207	11.9999
((..	chr11:2150294-2150501(-)$1	1	43	47	11.9999
((((	chr5:148884573-148884799(-)$1	1	41	45	11.9999
..))	chr2:179971114-179971363(-)$1	1	20	24	11.9999
...)	chr9:86584428-86584698(-)$1	1	198	202	11.9999
((((	chr4:107168880-107169164(-)$1	1	90	94	11.9999
...)	chr5:14488720-14488969(+)$1	1	40	44	11.9999
)..)	chr5:148884426-148884669(-)$1	1	48	52	11.9999
(((.	chr9:115449122-115449398(-)$1	1	5	9	11.9999
.(((	chr6:108365427-108365807(-)$1	1	0	4	11.9999
((..	chr6:163995061-163995312(+)$1	1	33	37	11.9999
)...	chr3:123675144-123675437(-)$1	1	83	87	11.9999
....	chr5:14488553-14488823(+)$1	1	1	5	11.9999
((((	chr2:101622004-101622340(+)$1	1	134	138	11.9999
...)	chr16:69737687-69737957(+)$1	1	34	38	11.9999
((((	chr2:149449615-149449937(+)$1	1	29	33	11.9999
...)	chr12:32520433-32520718(+)$1	1	135	139	11.9999
.(((	chr16:68172586-68172888(+)$1	1	103	107	11.9999
((((	chr14:21491141-21491443(-)$1	1	58	62	11.9999
))))	chr1:2336934-2337218(-)$1	1	124	128	11.9999
(..(	chr16:20745560-20745836(+)$1	1	13	17	11.9999
..))	chrX:70794344-70794567(+)$1	1	162	166	11.9999
..((	chr13:98017253-98017513(+)$1	1	58	62	11.9999
))))	chr3:178954096-178954382(+)$1	1	50	54	11.9999
....	chr16:47497606-47497849(+)$1	1	100	104	11.9999
....	chr11:2151505-2151757(-)$1	1	94	98	11.9999
)))(	chr4:186598538-186598812(-)$1	1	61	65	11.9999
....	chr2:149449310-149449556(+)$1	1	14	18	11.9999
....	chr18:32918445-32918685(-)$1	1	79	83	11.9999
((((	chr15:50895989-50896296(-)$1	1	38	42	11.9999
...)	chr4:110685483-110685710(-)$1	1	67	71	11.9999
..((	chr1:241795034-241795292(-)$1	1	16	20	11.9999
...)	chr1:150117244-150117521(+)$1	1	52	56	11.9999
))).	chr7:139246412-139246637(-)$1	1	184	188	11.9999
((.(	chr7:155573169-155573534(+)$1	1	72	76	11.9999
(((.	chr11:2150254-2150478(-)$1	1	20	24	11.9999
...)	chr20:3904640-3904926(+)$1	1	241	245	11.9999
((((	chr9:108153137-108153390(+)$1	1	76	80	11.9999
...(	chr1:156213332-156213619(-)$1	1	174	178	11.9999
))))	chr3:176741476-176741710(-)$1	1	113	117	11.9999
))))	chr3:183888957-183889196(+)$1	1	78	82	11.9999
...(	chr3:170714341-170714637(-)$1	1	81	85	11.9999
((((	chr6:52269527-52269788(+)$1	1	7	11	11.9999
..))	chr10:93622986-93623240(+)$1	1	159	163	11.9999
..))	chr10:93622949-93623186(+)$1	1	196	200	11.9999
(((.	chr13:99101837-99102099(+)$1	1	86	90	11.9999
(..(	chr14:97001054-97001318(+)$1	1	138	142	11.9999
))).	chr7:139246366-139246612(-)$1	1	159	163	11.9999
...)	chr4:140339785-140340061(+)$1	1	234	238	11.9999
.)))	chr14:21461921-21462205(+)$1	1	193	197	11.9999
..))	chr1:162492352-162492601(+)$1	1	152	156	11.9999
(((.	chr9:36339332-36339615(-)$1	1	103	107	11.9999
(((.	chr17:55758750-55759055(+)$1	1	15	19	11.9999
(.((	chr7:131175885-131176164(+)$1	1	15	19	11.9999
)..)	chr17:29701694-29701972(+)$1	1	271	275	11.9999
.)))	chr17:64804150-64804510(+)$1	1	274	278	11.9999
))).	chr7:86792336-86792594(+)$1	1	224	228	11.9999
.(((	chr2:135816327-135816580(+)$1	1	14	18	11.9999
...(	chr14:21927716-21928003(-)$1	1	55	59	11.9999
((((	chr16:88928554-88928833(+)$1	1	20	24	11.9999

#PSSM
U : 0.91	u : 0.08	
U : 0.91	u : 0.08	
U : 0.91	u : 0.08	
G : 0.91	g : 0.08	

#score	1079.9999999999998
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_CDS_m3_run1.nuc.txt

#NT
GGCAGGAGCCCGGG	chr6:30690233-30690496(+)$1	263	194	208	16.9999
GCCGGAGCCCCGCG	chr6:89790812-89791072(+)$1	260	180	194	17.7692
GGAGGUGGCCUGCG	chr16:18812651-18812873(-)$1	222	45	59	12.9615
GGCGGAUUCCAGGA	chr3:32932966-32933189(+)$1	223	159	173	14.4999
GCCGGAGCCCCGGC	chr22:29196303-29196563(-)$1	260	132	146	19.5000
GCCGGAGCCCCGGC	chr22:29196197-29196436(-)$1	239	5	19	19.5000
ggcggcgcccccgg	chr2:171572746-171572982(+)$1	236	114	128	18.7307
GGCGGGGCUCCGGU	chr6:30712038-30712284(-)$1	246	71	85	14.6923
GGCGGAGGCCCGGG	chr14:35873556-35873829(-)$1	273	212	226	24.6923
GGCGGCGGCGCGGA	chr20:278163-278466(+)$1	303	73	87	17.5769
GGCGGAAGCCAAGG	chr22:29193026-29193287(-)$1	261	210	224	17.1923
GCCGGAGCCCCGGC	chr22:29196261-29196498(-)$1	237	67	81	19.5000
GCUGGUGGCCAGGU	chr5:73931051-73931319(-)$1	268	130	144	12.9615
CGUGGAAGCCGGGG	chr13:113760961-113761265(+)$1	304	239	253	12.3846
GCCGGCGCCCCUGC	chr6:30711634-30711886(-)$1	252	17	31	15.0769
GGCGGAUUCCAGGA	chr3:32932943-32933166(+)$1	223	182	196	14.4999
GGCAGCAGCCCGGG	chr2:110372615-110372868(+)$1	253	120	134	17.9615
GGCGGCAGCUCGGG	chr4:24585886-24586151(-)$1	265	228	242	17.7692
GGCGGCGGGCGGCG	chr2:171573458-171573682(+)$1	224	98	112	13.9230
CGCUGAGGCCGGGG	chr2:171573810-171574077(+)$1	267	61	75	14.4999
GCCGGAGCCCCGGC	chr22:29196236-29196461(-)$1	225	30	44	19.5000
GGCGGAAGCCAAGG	chr22:29192964-29193226(-)$1	262	149	163	17.1923
GCCCGCGGCCCAGC	chr14:35873629-35873919(-)$1	290	21	35	13.3461
GGCUGCGGACCGCG	chr7:100172805-100173066(-)$1	261	185	199	12.5769
GGUGGUGGCUGGGG	chr20:4679970-4680249(+)$1	279	79	93	13.3461

#otherMatches

#Struct PSSM
GGGGGDDDD}EEEE	chr12:125270551-125270850(-)$1	299	185	199	12.1923
dddmmmmddddBB}	chr6:30690233-30690496(+)$1	263	194	208	16.9999
iiiii[dddd[a[d	chr6:89790812-89791072(+)$1	260	180	194	17.7692
eee[ddddaddddm	chr16:18812651-18812873(-)$1	222	45	59	12.9615
BB}DDDD}FFFFFF	chr3:32932966-32933189(+)$1	223	159	173	14.4999
dddddmmmmdddd]	chr22:29196303-29196563(-)$1	260	132	146	19.5000
BB{BBKKEEEEE{F	chr22:29196197-29196436(-)$1	239	5	19	19.5000
GGGGG{BB{BB{BB	chr2:171572746-171572982(+)$1	236	114	128	18.7307
bbggggggg:DDDD	chr6:30712038-30712284(-)$1	246	71	85	14.6923
cbb]a22bbhhhhh	chr14:35873556-35873829(-)$1	273	212	226	24.6923
:::ccc[ffffff[	chr20:278163-278466(+)$1	303	73	87	17.5769
cccmmmmccc::CC	chr22:29193026-29193287(-)$1	261	210	224	17.1923
dddddmmmmdddd]	chr22:29196261-29196498(-)$1	237	67	81	19.5000
llccc]bb]ccc]e	chr5:73931051-73931319(-)$1	268	130	144	12.9615
b]bb333dddd22g	chr13:113760961-113761265(+)$1	304	239	253	12.3846
dd[dddd$$$$$bb	chr6:30711634-30711886(-)$1	252	17	31	15.0769
BB}DDDD}FFFFFF	chr3:32932943-32933166(+)$1	223	182	196	14.4999
ii[ccc[bbmmmmb	chr2:110372615-110372868(+)$1	253	120	134	17.9615
[a[cccpppppppc	chr4:24585886-24586151(-)$1	265	228	242	17.7692
ffffff]iiiiiii	chr2:171573458-171573682(+)$1	224	98	112	13.9230
:dddd[bb!!ffff	chr2:171573810-171574077(+)$1	267	61	75	14.4999
dddddmmmmdddd]	chr22:29196236-29196461(-)$1	225	30	44	19.5000
dddd333dddd]dd	chr22:29192964-29193226(-)$1	262	149	163	17.1923
ccclllccc333dd	chr14:35873629-35873919(-)$1	290	21	35	13.3461
EE}CCCffffff[a	chr7:100172805-100173066(-)$1	261	185	199	12.5769
[dddd[eeeee###	chr20:4679970-4680249(+)$1	279	79	93	13.3461

#DB
))))))))).))))	chr12:125270551-125270850(-)$1	1	185	199	12.1923
(((....)))))).	chr6:30690233-30690496(+)$1	1	194	208	16.9999
(((((.((((.(.(	chr6:89790812-89791072(+)$1	1	180	194	17.7692
(((.(((((((((.	chr16:18812651-18812873(-)$1	1	45	59	12.9615
)).)))).))))))	chr3:32932966-32933189(+)$1	1	159	173	14.4999
(((((....)))).	chr22:29196303-29196563(-)$1	1	132	146	19.5000
((.((..(((((.(	chr22:29196197-29196436(-)$1	1	5	19	19.5000
(((((.((.((.((	chr2:171572746-171572982(+)$1	1	114	128	18.7307
))))))))).((((	chr6:30712038-30712284(-)$1	1	71	85	14.6923
))).)..)))))))	chr14:35873556-35873829(-)$1	1	212	226	24.6923
...(((.((((((.	chr20:278163-278466(+)$1	1	73	87	17.5769
(((....)))..))	chr22:29193026-29193287(-)$1	1	210	224	17.1923
(((((....)))).	chr22:29196261-29196498(-)$1	1	67	81	19.5000
..))).)).))).)	chr5:73931051-73931319(-)$1	1	130	144	12.9615
).))...))))..)	chr13:113760961-113761265(+)$1	1	239	253	12.3846
((.((((.....((	chr6:30711634-30711886(-)$1	1	17	31	15.0769
)).)))).))))))	chr3:32932943-32933166(+)$1	1	182	196	14.4999
((.(((.((....)	chr2:110372615-110372868(+)$1	1	120	134	17.9615
.(.(((.......)	chr4:24585886-24586151(-)$1	1	228	242	17.7692
)))))).)))))))	chr2:171573458-171573682(+)$1	1	98	112	13.9230
.((((.((..((((	chr2:171573810-171574077(+)$1	1	61	75	14.4999
(((((....)))).	chr22:29196236-29196461(-)$1	1	30	44	19.5000
))))...)))).))	chr22:29192964-29193226(-)$1	1	149	163	17.1923
(((...)))...))	chr14:35873629-35873919(-)$1	1	21	35	13.3461
)).)))((((((.(	chr7:100172805-100173066(-)$1	1	185	199	12.5769
.((((.(((((...	chr20:4679970-4680249(+)$1	1	79	93	13.3461

#PSSM
G : 0.88	C : 0.07	g : 0.03	
G : 0.65	C : 0.30	g : 0.03	
C : 0.76	U : 0.11	A : 0.07	c : 0.03	
G : 0.76	A : 0.07	U : 0.07	g : 0.03	C : 0.03	
G : 0.96	g : 0.03	
A : 0.46	C : 0.26	G : 0.11	U : 0.11	c : 0.03	
G : 0.65	A : 0.23	U : 0.07	g : 0.03	
G : 0.61	C : 0.26	U : 0.07	c : 0.03	
C : 0.84	c : 0.03	U : 0.03	G : 0.03	A : 0.03	
C : 0.80	U : 0.07	A : 0.03	c : 0.03	G : 0.03	
C : 0.57	A : 0.19	G : 0.15	U : 0.03	c : 0.03	
G : 0.76	A : 0.15	c : 0.03	U : 0.03	
G : 0.80	C : 0.15	g : 0.03	
G : 0.53	C : 0.23	A : 0.11	U : 0.07	g : 0.03	

#score	420.84615384615375
#seq	26
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_CDS_m1_run2.nuc.txt

#NT
CUGAAGG	chr16:77233307-77233575(+)$1	268	96	103	13.0138
CUGCCGG	chr17:46620854-46621112(-)$1	258	14	21	13.2916
CUGCAUG	chr11:61116930-61117183(-)$1	253	30	37	12.4583
CUGCAGU	chr1:183521971-183522261(+)$1	290	244	251	13.4305
CUGCAGC	chr22:35743095-35743348(+)$1	253	124	131	13.2222
CAGCAGG	chr16:67976988-67977291(-)$1	303	11	18	12.8749
CUGCUGG	chr5:140050785-140051042(+)$1	257	25	32	13.7083
CUGCAGU	chr6:125583953-125584225(+)$1	272	143	150	13.4305
CUGCAGG	chr7:1049525-1049785(-)$1	260	194	201	17.1805
CUGCUGG	chr3:183961597-183961885(-)$1	288	122	129	13.7083
cugcagu	chr17:420648-420902(-)$1	254	62	69	13.4305
CUGCUGG	chr19:4366837-4367088(-)$1	251	203	210	13.7083
CUUCAGG	chr1:203800704-203800954(+)$1	250	90	97	12.7361
CUGCAGA	chr19:3784235-3784523(-)$1	288	68	75	13.2222
AUGCAGG	chr6:32942138-32942390(+)$1	252	117	124	12.7361
CAGCAGG	chr22:32894309-32894627(+)$1	318	165	172	12.8749
CUGCAAG	chr19:49376890-49377139(+)$1	249	50	57	12.5277
CUGCAGG	chr19:47111642-47111868(+)$1	226	6	13	17.1805
CUGCAGG	chr1:156221107-156221321(-)$1	214	47	54	17.1805
UUGCAGG	chr10:124924448-124924704(+)$1	256	108	115	12.9444
CUGCUGG	chr4:2263544-2263831(-)$1	287	148	155	13.7083
CUGCAGG	chr1:156219420-156219698(-)$1	278	36	43	17.1805
CUGCUGG	chr17:73841988-73842263(-)$1	275	198	205	13.7083
CUGCAGU	chr12:120534228-120534480(-)$1	252	63	70	13.4305
CUGCAGU	chr19:11256986-11257233(-)$1	247	183	190	13.4305
CUGCAGG	chr19:1491220-1491480(+)$1	260	157	164	17.1805
CUGGAGG	chr9:139566277-139566528(+)$1	251	0	7	13.2222
CUGCAGG	chr19:41937671-41937922(-)$1	251	205	212	17.1805
GUGCAGG	chr19:39876079-39876320(+)$1	241	11	18	12.8055
cugcagg	chr2:220148046-220148282(+)$1	236	44	51	17.1805
CUGCAGG	chr17:7491307-7491583(+)$1	276	267	274	17.1805
UUGCAGG	chr7:150068261-150068550(+)$1	289	83	90	12.9444
CUGCAGU	chr1:183522083-183522336(+)$1	253	132	139	13.4305
CUGGAGG	chr1:156713873-156714088(-)$1	215	128	135	13.2222
CUGCUGG	chr7:149576620-149576874(+)$1	254	72	79	13.7083
CAGCAGG	chr17:38153971-38154280(+)$1	309	53	60	12.8749
cuccagg	chr6:32157444-32157719(-)$1	275	55	62	12.8749
CUGCAGA	chr6:32159417-32159659(-)$1	242	6	13	13.2222
CUGCCGG	chr19:3121237-3121477(+)$1	240	5	12	13.2916
CUGAAGG	chr19:49377471-49377707(+)$1	236	33	40	13.0138
CUCCAGG	chr22:31285380-31285621(+)$1	241	224	231	12.8749
CUGCAGG	chr19:51301386-51301640(-)$1	254	114	121	17.1805
CUGCAGG	chr11:767231-767482(-)$1	251	22	29	17.1805
CUCCAGG	chr16:1496104-1496376(-)$1	272	1	8	12.8749
CUGCUGG	chr17:61510614-61510895(-)$1	281	24	31	13.7083
CUGCAGG	chr19:868106-868417(-)$1	311	160	167	17.1805
GUGCAGG	chr12:124812045-124812282(-)$1	237	129	136	12.8055
CUGCUGG	chr17:3831913-3832170(-)$1	257	168	175	13.7083
CUGGAGG	chr22:39917527-39917776(+)$1	249	34	41	13.2222
CUGGAGG	chr19:50436079-50436341(+)$1	262	126	133	13.2222
CUGCAGG	chr16:30681408-30681686(+)$1	278	145	152	17.1805
CUGCCGG	chr4:77996526-77996817(-)$1	291	155	162	13.2916
CUGCAGC	chr6:33164181-33164423(-)$1	242	34	41	13.2222
CUGCUGG	chr9:134353811-134354051(+)$1	240	153	160	13.7083
UUGCAGG	chr1:43850052-43850337(-)$1	285	108	115	12.9444
CUGCAGA	chr15:90772291-90772644(+)$1	353	64	71	13.2222
CUGCAGG	chr1:6694603-6694862(-)$1	259	40	47	17.1805
CUGCAGG	chr19:55743456-55743679(-)$1	223	29	36	17.1805
CUCCAGG	chr22:42981096-42981361(-)$1	265	131	138	12.8749
UUGCAGG	chr12:54741684-54741922(+)$1	238	93	100	12.9444
CUGGAGG	chr19:50436216-50436435(+)$1	219	10	17	13.2222
CUGCAGG	chr1:156219568-156219865(-)$1	297	114	121	17.1805
CUGCAGC	chr1:2522421-2522648(+)$1	227	88	95	13.2222
CUGCAAG	chr19:49376939-49377183(+)$1	244	1	8	12.5277
CUGGAGG	chr16:30959014-30959280(+)$1	266	76	83	13.2222
CUGAAGG	chr22:42981220-42981474(-)$1	254	41	48	13.0138
cugcggg	chr19:47778057-47778359(+)$1	302	44	51	13.1527
CAGCAGG	chr14:105675727-105676007(-)$1	280	256	263	12.8749
CUGCAGG	chr7:1037282-1037534(-)$1	252	139	146	17.1805
CUUCAGG	chr17:79826381-79826616(-)$1	235	187	194	12.7361
CUGCAGG	chr19:867976-868266(-)$1	290	9	16	17.1805

#otherMatches

#Struct PSSM
DDDDa[e	chr19:1578293-1578580(-)$1	287	62	69	12.8749
bb333ff	chr16:77233307-77233575(+)$1	268	96	103	13.0138
ggggggg	chr17:46620854-46621112(-)$1	258	14	21	13.2916
c[cccnn	chr11:61116930-61117183(-)$1	253	30	37	12.4583
eeee:BB	chr1:183521971-183522261(+)$1	290	244	251	13.4305
qqqqqa]	chr22:35743095-35743348(+)$1	253	124	131	13.2222
ccc:DDD	chr16:67976988-67977291(-)$1	303	11	18	12.8749
HHHHHHH	chr5:140050785-140051042(+)$1	257	25	32	13.7083
ggggg[d	chr6:125583953-125584225(+)$1	272	143	150	13.4305
22fffff	chr7:1049525-1049785(-)$1	260	194	201	17.1805
qqqqqbb	chr3:183961597-183961885(-)$1	288	122	129	13.7083
!gggggg	chr17:420648-420902(-)$1	254	62	69	13.4305
ffffff!	chr19:4366837-4367088(-)$1	251	203	210	13.7083
f####ee	chr1:203800704-203800954(+)$1	250	90	97	12.7361
dmmmmdd	chr19:3784235-3784523(-)$1	288	68	75	13.2222
ffFFFFF	chr6:32942138-32942390(+)$1	252	117	124	12.7361
ennnnne	chr22:32894309-32894627(+)$1	318	165	172	12.8749
ccc:::f	chr19:49376890-49377139(+)$1	249	50	57	12.5277
KKABB{E	chr19:47111642-47111868(+)$1	226	6	13	17.1805
dddcccr	chr1:156221107-156221321(-)$1	214	47	54	17.1805
%%eeeee	chr10:124924448-124924704(+)$1	256	108	115	12.9444
ee]ccc3	chr4:2263544-2263831(-)$1	287	148	155	13.7083
c[fffff	chr1:156219420-156219698(-)$1	278	36	43	17.1805
h####dd	chr17:73841988-73842263(-)$1	275	198	205	13.7083
fff[eee	chr12:120534228-120534480(-)$1	252	63	70	13.4305
YYDDDDY	chr19:11256986-11257233(-)$1	247	183	190	13.4305
eeee::c	chr19:1491220-1491480(+)$1	260	157	164	17.1805
CCCFFFF	chr9:139566277-139566528(+)$1	251	0	7	13.2222
hhhhhhh	chr19:41937671-41937922(-)$1	251	205	212	17.1805
g[a!!bb	chr19:39876079-39876320(+)$1	241	11	18	12.8055
::ddddm	chr2:220148046-220148282(+)$1	236	44	51	17.1805
eeeee::	chr17:7491307-7491583(+)$1	276	267	274	17.1805
IIIIIII	chr7:150068261-150068550(+)$1	289	83	90	12.9444
IIII:dd	chr1:183522083-183522336(+)$1	253	132	139	13.4305
ff::::B	chr1:156713873-156714088(-)$1	215	128	135	13.2222
bb]bb]d	chr7:149576620-149576874(+)$1	254	72	79	13.7083
bb]a]cc	chr17:38153971-38154280(+)$1	309	53	60	12.8749
ffff[cc	chr6:32157444-32157719(-)$1	275	55	62	12.8749
DDDKKFF	chr6:32159417-32159659(-)$1	242	6	13	13.2222
GGGGGgg	chr19:3121237-3121477(+)$1	240	5	12	13.2916
dd"""dd	chr19:49377471-49377707(+)$1	236	33	40	13.0138
mccc]bb	chr22:31285380-31285621(+)$1	241	224	231	12.8749
###bb[a	chr19:51301386-51301640(-)$1	254	114	121	17.1805
GG{GGGG	chr11:767231-767482(-)$1	251	22	29	17.1805
::JJJJJ	chr16:1496104-1496376(-)$1	272	1	8	12.8749
mmbbIII	chr17:61510614-61510895(-)$1	281	24	31	13.7083
qqqqqff	chr19:868106-868417(-)$1	311	160	167	17.1805
eeee[bb	chr12:124812045-124812282(-)$1	237	129	136	12.8055
fmmmmff	chr17:3831913-3832170(-)$1	257	168	175	13.7083
MCCC{GG	chr22:39917527-39917776(+)$1	249	34	41	13.2222
33fffff	chr19:50436079-50436341(+)$1	262	126	133	13.2222
CCC}DDD	chr16:30681408-30681686(+)$1	278	145	152	17.1805
D}EEEEE	chr4:77996526-77996817(-)$1	291	155	162	13.2916
dddqqqq	chr6:33164181-33164423(-)$1	242	34	41	13.2222
ggggg^^	chr9:134353811-134354051(+)$1	240	153	160	13.7083
++hhhhh	chr1:43850052-43850337(-)$1	285	108	115	12.9444
!!eeeee	chr15:90772291-90772644(+)$1	353	64	71	13.2222
::hhhhh	chr1:6694603-6694862(-)$1	259	40	47	17.1805
FFFKKCC	chr19:55743456-55743679(-)$1	223	29	36	17.1805
$$$$$gg	chr22:42981096-42981361(-)$1	265	131	138	12.8749
:ccc[cc	chr12:54741684-54741922(+)$1	238	93	100	12.9444
{EEEEEb	chr19:50436216-50436435(+)$1	219	10	17	13.2222
mma]eee	chr1:156219568-156219865(-)$1	297	114	121	17.1805
gggg:::	chr1:2522421-2522648(+)$1	227	88	95	13.2222
::BBKKF	chr19:49376939-49377183(+)$1	244	1	8	12.5277
$$eeeee	chr16:30959014-30959280(+)$1	266	76	83	13.2222
oooobb2	chr22:42981220-42981474(-)$1	254	41	48	13.0138
MMA{HHH	chr19:47778057-47778359(+)$1	302	44	51	13.1527
EEEEYYF	chr14:105675727-105676007(-)$1	280	256	263	12.8749
F}FFFFF	chr7:1037282-1037534(-)$1	252	139	146	17.1805
DDYYGGG	chr17:79826381-79826616(-)$1	235	187	194	12.7361
qqqqqff	chr19:867976-868266(-)$1	290	9	16	17.1805

#DB
(((((.(	chr19:1578293-1578580(-)$1	1	62	69	12.8749
))...))	chr16:77233307-77233575(+)$1	1	96	103	13.0138
(((((((	chr17:46620854-46621112(-)$1	1	14	21	13.2916
(.(((..	chr11:61116930-61117183(-)$1	1	30	37	12.4583
)))).))	chr1:183521971-183522261(+)$1	1	244	251	13.4305
.....).	chr22:35743095-35743348(+)$1	1	124	131	13.2222
))).(((	chr16:67976988-67977291(-)$1	1	11	18	12.8749
(((((((	chr5:140050785-140051042(+)$1	1	25	32	13.7083
(((((.(	chr6:125583953-125584225(+)$1	1	143	150	13.4305
..)))))	chr7:1049525-1049785(-)$1	1	194	201	17.1805
.....))	chr3:183961597-183961885(-)$1	1	122	129	13.7083
.((((((	chr17:420648-420902(-)$1	1	62	69	13.4305
((((((.	chr19:4366837-4367088(-)$1	1	203	210	13.7083
(....((	chr1:203800704-203800954(+)$1	1	90	97	12.7361
(....))	chr19:3784235-3784523(-)$1	1	68	75	13.2222
))(((((	chr6:32942138-32942390(+)$1	1	117	124	12.7361
(.....)	chr22:32894309-32894627(+)$1	1	165	172	12.8749
)))...(	chr19:49376890-49377139(+)$1	1	50	57	12.5277
..(((.(	chr19:47111642-47111868(+)$1	1	6	13	17.1805
((((((.	chr1:156221107-156221321(-)$1	1	47	54	17.1805
..(((((	chr10:124924448-124924704(+)$1	1	108	115	12.9444
)).))).	chr4:2263544-2263831(-)$1	1	148	155	13.7083
(.(((((	chr1:156219420-156219698(-)$1	1	36	43	17.1805
(....((	chr17:73841988-73842263(-)$1	1	198	205	13.7083
(((.(((	chr12:120534228-120534480(-)$1	1	63	70	13.4305
..)))).	chr19:11256986-11257233(-)$1	1	183	190	13.4305
))))..(	chr19:1491220-1491480(+)$1	1	157	164	17.1805
(((((((	chr9:139566277-139566528(+)$1	1	0	7	13.2222
)))))))	chr19:41937671-41937922(-)$1	1	205	212	17.1805
(.(..((	chr19:39876079-39876320(+)$1	1	11	18	12.8055
..((((.	chr2:220148046-220148282(+)$1	1	44	51	17.1805
)))))..	chr17:7491307-7491583(+)$1	1	267	274	17.1805
(((((((	chr7:150068261-150068550(+)$1	1	83	90	12.9444
)))).((	chr1:183522083-183522336(+)$1	1	132	139	13.4305
))....)	chr1:156713873-156714088(-)$1	1	128	135	13.2222
)).)).)	chr7:149576620-149576874(+)$1	1	72	79	13.7083
)).).))	chr17:38153971-38154280(+)$1	1	53	60	12.8749
((((.((	chr6:32157444-32157719(-)$1	1	55	62	12.8749
(((..((	chr6:32159417-32159659(-)$1	1	6	13	13.2222
(((((((	chr19:3121237-3121477(+)$1	1	5	12	13.2916
((...((	chr19:49377471-49377707(+)$1	1	33	40	13.0138
.))).))	chr22:31285380-31285621(+)$1	1	224	231	12.8749
...((.(	chr19:51301386-51301640(-)$1	1	114	121	17.1805
((.((((	chr11:767231-767482(-)$1	1	22	29	17.1805
..(((((	chr16:1496104-1496376(-)$1	1	1	8	12.8749
..))(((	chr17:61510614-61510895(-)$1	1	24	31	13.7083
.....))	chr19:868106-868417(-)$1	1	160	167	17.1805
((((.((	chr12:124812045-124812282(-)$1	1	129	136	12.8055
(....))	chr17:3831913-3832170(-)$1	1	168	175	13.7083
.(((.((	chr22:39917527-39917776(+)$1	1	34	41	13.2222
..)))))	chr19:50436079-50436341(+)$1	1	126	133	13.2222
))).)))	chr16:30681408-30681686(+)$1	1	145	152	17.1805
).)))))	chr4:77996526-77996817(-)$1	1	155	162	13.2916
(((....	chr6:33164181-33164423(-)$1	1	34	41	13.2222
(((((..	chr9:134353811-134354051(+)$1	1	153	160	13.7083
..(((((	chr1:43850052-43850337(-)$1	1	108	115	12.9444
..(((((	chr15:90772291-90772644(+)$1	1	64	71	13.2222
..(((((	chr1:6694603-6694862(-)$1	1	40	47	17.1805
(((..((	chr19:55743456-55743679(-)$1	1	29	36	17.1805
.....((	chr22:42981096-42981361(-)$1	1	131	138	12.8749
.(((.((	chr12:54741684-54741922(+)$1	1	93	100	12.9444
.((((((	chr19:50436216-50436435(+)$1	1	10	17	13.2222
..).)))	chr1:156219568-156219865(-)$1	1	114	121	17.1805
))))...	chr1:2522421-2522648(+)$1	1	88	95	13.2222
..((..(	chr19:49376939-49377183(+)$1	1	1	8	12.5277
..(((((	chr16:30959014-30959280(+)$1	1	76	83	13.2222
....)).	chr22:42981220-42981474(-)$1	1	41	48	13.0138
..(.(((	chr19:47778057-47778359(+)$1	1	44	51	13.1527
))))..)	chr14:105675727-105676007(-)$1	1	256	263	12.8749
).)))))	chr7:1037282-1037534(-)$1	1	139	146	17.1805
))..)))	chr17:79826381-79826616(-)$1	1	187	194	12.7361
.....))	chr19:867976-868266(-)$1	1	9	16	17.1805

#PSSM
C : 0.84	c : 0.05	U : 0.05	G : 0.02	A : 0.01	
U : 0.87	A : 0.06	u : 0.05	
G : 0.87	g : 0.04	C : 0.04	U : 0.02	c : 0.01	
C : 0.81	G : 0.08	c : 0.05	A : 0.04	
A : 0.77	U : 0.12	C : 0.04	a : 0.04	g : 0.01	
G : 0.90	g : 0.05	A : 0.02	U : 0.01	
G : 0.79	U : 0.06	C : 0.04	A : 0.04	g : 0.04	u : 0.01	

#score	1015.7499999999984
#seq	72
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_UTR_m1_run2.nuc.txt

#NT
uuguuuucuuuuuuuuu	chr11:3756390-3756659(-)$1	269	79	96	28.0652
UUCAGGUUUUUUUUUUU	chr3:123674814-123675087(-)$1	273	190	207	27.4130
uuuuuuguuuuuuuuuu	chr1:203771585-203771837(+)$1	252	161	178	28.1739
UUUACCUAUUUUUUUUC	chr20:3944518-3944789(-)$1	271	80	97	23.9347
UUUAUUCCCUUUUUUUU	chr13:27830463-27830678(+)$1	215	81	98	21.5434
UUCAUCUUUUUUUUUUU	chr7:16675917-16676187(-)$1	270	85	102	28.3913
AUAAUUUUUCUUUUUUC	chr2:175939408-175939677(-)$1	269	90	107	22.4130
UAUACUUUUUUCCUUUU	chr14:35871898-35872177(-)$1	279	85	102	20.8913
uuaaauuuuGUCUUUUC	chr6:99848095-99848309(-)$1	214	92	109	21.7608
UUCUCUUUAGUUUUUUA	chr1:145650382-145650632(+)$1	250	90	107	20.6739
UUCUAUUUUUUUUUUUC	chr14:65568144-65568403(-)$1	259	83	100	28.3913
UUUAAUUAAUUUUUUUC	chr12:69052947-69053196(+)$1	249	85	102	22.1956
UCUACGUUUUUAUUUUU	chr19:54972085-54972299(+)$1	214	195	212	21.5434
GUGACUCUUUUUUUUUC	chr1:36411178-36411400(+)$1	222	82	99	23.2826
uuuuuuuuuuuuuuuuu	chr2:207014499-207014760(-)$1	261	79	96	32.3043
uuuuuuuuuuuuuuuuu	chr1:183481861-183482113(+)$1	252	83	100	32.3043
uuuuuuuuuuuuuuuuu	chr8:8865391-8865655(+)$1	264	55	72	32.3043
UUGACUUUUUUUUUUUG	chr11:76157830-76158086(+)$1	256	87	104	30.3478
uuguuuuuuuuuuguuc	chr16:31199527-31199808(+)$1	281	80	97	25.4565
CUUUCUUUUuuuuuuuu	chr19:10273292-10273538(-)$1	246	217	234	28.1739
UUGAAACUUUUUUUUUU	chr12:122999151-122999421(-)$1	270	45	62	24.1521
UUUACUUUGUUUAUUUU	chr7:30671751-30672031(+)$1	280	88	105	24.8043
UUCCAUUUUUUUUUUUU	chr2:118853882-118854153(+)$1	271	207	224	28.7173
UUAAGUUAUUUUUCUUC	chr19:54972712-54972964(+)$1	252	231	248	20.8913
uuuucuuucuuuuuuuu	chr2:29023012-29023259(+)$1	247	71	88	28.3913
UUAAGUAUUUUAUUUUG	chr2:54114447-54114711(-)$1	264	87	104	20.2391
UUGuuuuuuuuuuuuuu	chr9:32985880-32986136(-)$1	256	65	82	31.8695
UUGACGUUUUUCUUUUU	chr3:33877406-33877681(+)$1	275	110	127	25.6739
UUUACUUUUACUUUUGU	chr2:198284881-198285151(-)$1	270	252	269	21.3260
UUCCCUUUUUUCUUUUU	chr19:30477078-30477324(+)$1	246	80	97	26.3260
UCCACUCUUUUUUUUUU	chr4:47916053-47916334(-)$1	281	80	97	24.4782
UUUACUUUUACUUUUGU	chr2:198284817-198285068(-)$1	251	169	186	21.3260
uuuuguuuuuguuuuug	chr16:89874600-89874884(-)$1	284	70	87	23.8260
UUGUAGUUUUUUUUUUU	chr15:58891775-58892035(-)$1	260	68	85	27.0869
UUGUUAUUUUUUGUUUC	chr7:64291721-64291986(+)$1	265	84	101	21.6521
uuaauuuuuuuuuuuuu	chr1:54395477-54395728(-)$1	251	33	50	32.3043
UUAAUUUUUCUUUUCUA	chr11:33182759-33182972(-)$1	213	39	56	21.2173
GUGACUUCUAUUUUUUC	chr4:83275170-83275424(-)$1	254	86	103	19.4782
UUUUCUUUUCUAUUUUU	chrX:135958675-135958924(-)$1	249	86	103	25.1304
UUUCCUUUUUCUUUUCC	chr3:37407458-37407738(+)$1	280	93	110	20.6739
UUGUUUUCUUUUUUUUC	chr2:62112078-62112326(-)$1	248	88	105	26.2173
UUAACuuuuuuuuuuuu	chr7:23545057-23545298(-)$1	241	66	83	32.6304
uuguuuuuuuuuuuuuu	chr14:23794958-23795224(+)$1	266	243	260	31.8695
UUCAGUUUUUUUCUUCU	chr17:38324339-38324620(+)$1	281	89	106	22.4130
UUGAUUUUUCUUUCCUU	chr12:22837307-22837576(+)$1	269	84	101	20.2391

#otherMatches

#Struct PSSM
GGGG:::::::::::::	chr2:152293232-152293497(+)$1	265	81	98	28.9347
c]bb]hhhhhhhh::::	chr11:3756390-3756659(-)$1	269	79	96	28.0652
fmmmmffffff]hhhhh	chr3:123674814-123675087(-)$1	273	190	207	27.4130
ggggg]bb:::::::::	chr1:203771585-203771837(+)$1	252	161	178	28.1739
tttccc:::::::::::	chr20:3944518-3944789(-)$1	271	80	97	23.9347
^^^^^^^^^^^^dddd2	chr13:27830463-27830678(+)$1	215	81	98	21.5434
^^^^^^^^^^^^^^^^^	chr7:16675917-16676187(-)$1	270	85	102	28.3913
cooooooccc22fffff	chr2:175939408-175939677(-)$1	269	90	107	22.4130
cc22dddd]hhhhhhhh	chr14:35871898-35872177(-)$1	279	85	102	20.8913
b]ccc]eeeee22cccE	chr6:99848095-99848309(-)$1	214	92	109	21.7608
^^^^^^^^^^^^^^^^^	chr1:145650382-145650632(+)$1	250	90	107	20.6739
ff:::::JJJJJJJJJJ	chr14:65568144-65568403(-)$1	259	83	100	28.3913
^^^^^^^^^^^^^^^^^	chr12:69052947-69053196(+)$1	249	85	102	22.1956
ccc::::::::::::::	chr19:54972085-54972299(+)$1	214	195	212	21.5434
BBWWWWWWWWWWWWWWW	chr1:36411178-36411400(+)$1	222	82	99	23.2826
ee:::::::::::::::	chr2:207014499-207014760(-)$1	261	79	96	32.3043
:::::::::::::::::	chr1:183481861-183482113(+)$1	252	83	100	32.3043
^^^^^^^^^^^^^^^^^	chr8:8865391-8865655(+)$1	264	55	72	32.3043
oooccc:::::::hhhh	chr11:76157830-76158086(+)$1	256	87	104	30.3478
JJJJJJJJJJJJJJJ::	chr16:31199527-31199808(+)$1	281	80	97	25.4565
eeehhhhhhhh:::JJJ	chr19:10273292-10273538(-)$1	246	217	234	28.1739
ffff:::::::::====	chr12:122999151-122999421(-)$1	270	45	62	24.1521
cpppppppccc666666	chr7:30671751-30672031(+)$1	280	88	105	24.8043
^^^^^^^^^^^^^^^^^	chr2:118853882-118854153(+)$1	271	207	224	28.7173
::cccqqqqqqqqcccD	chr19:54972712-54972964(+)$1	252	231	248	20.8913
:::::::::::::::::	chr2:29023012-29023259(+)$1	247	71	88	28.3913
::::::::::eeeee[d	chr2:54114447-54114711(-)$1	264	87	104	20.2391
::::::::::::GGGGG	chr9:32985880-32986136(-)$1	256	65	82	31.8695
ddddDDDD{HHHHHHHH	chr3:33877406-33877681(+)$1	275	110	127	25.6739
444dddd]ccc::::::	chr2:198284881-198285151(-)$1	270	252	269	21.3260
IIII:::::::::::::	chr19:30477078-30477324(+)$1	246	80	97	26.3260
&&&============[i	chr4:47916053-47916334(-)$1	281	80	97	24.4782
oooodddd22ggggggg	chr2:198284817-198285068(-)$1	251	169	186	21.3260
hhhhhh333ccc]ccc:	chr16:89874600-89874884(-)$1	284	70	87	23.8260
===========::ffff	chr15:58891775-58892035(-)$1	260	68	85	27.0869
ffffJJJJJJJJJJ{CC	chr7:64291721-64291986(+)$1	265	84	101	21.6521
>>>>>>>>>>>>>>>>>	chr1:54395477-54395728(-)$1	251	33	50	32.3043
^^^^^^^^^^^^^^^^d	chr11:33182759-33182972(-)$1	213	39	56	21.2173
BB{JJJJJJJJJJ:::d	chr4:83275170-83275424(-)$1	254	86	103	19.4782
:::::::::::::FFFF	chrX:135958675-135958924(-)$1	249	86	103	25.1304
::::::::DDDD}DDDD	chr3:37407458-37407738(+)$1	280	93	110	20.6739
wwwwwwwiiiiiiiii:	chr2:62112078-62112326(-)$1	248	88	105	26.2173
^^^^^^^^^^^^^^^^^	chr7:23545057-23545298(-)$1	241	66	83	32.6304
:::::::::::::::::	chr14:23794958-23795224(+)$1	266	243	260	31.8695
hhccc::::::::::::	chr17:38324339-38324620(+)$1	281	89	106	22.4130
ccc4444dddd]eeeee	chr12:22837307-22837576(+)$1	269	84	101	20.2391

#DB
((((.............	chr2:152293232-152293497(+)$1	1	81	98	28.9347
).)).))))))))....	chr11:3756390-3756659(-)$1	1	79	96	28.0652
(....)))))).)))))	chr3:123674814-123675087(-)$1	1	190	207	27.4130
))))).)).........	chr1:203771585-203771837(+)$1	1	161	178	28.1739
...)))...........	chr20:3944518-3944789(-)$1	1	80	97	23.9347
............)))).	chr13:27830463-27830678(+)$1	1	81	98	21.5434
.................	chr7:16675917-16676187(-)$1	1	85	102	28.3913
(......)))..)))))	chr2:175939408-175939677(-)$1	1	90	107	22.4130
))..)))).))))))))	chr14:35871898-35872177(-)$1	1	85	102	20.8913
).))).)))))..)))(	chr6:99848095-99848309(-)$1	1	92	109	21.7608
.................	chr1:145650382-145650632(+)$1	1	90	107	20.6739
)).....((((((((((	chr14:65568144-65568403(-)$1	1	83	100	28.3913
.................	chr12:69052947-69053196(+)$1	1	85	102	22.1956
)))..............	chr19:54972085-54972299(+)$1	1	195	212	21.5434
((...............	chr1:36411178-36411400(+)$1	1	82	99	23.2826
))...............	chr2:207014499-207014760(-)$1	1	79	96	32.3043
.................	chr1:183481861-183482113(+)$1	1	83	100	32.3043
.................	chr8:8865391-8865655(+)$1	1	55	72	32.3043
...))).......((((	chr11:76157830-76158086(+)$1	1	87	104	30.3478
(((((((((((((((..	chr16:31199527-31199808(+)$1	1	80	97	25.4565
)))))))))))...)))	chr19:10273292-10273538(-)$1	1	217	234	28.1739
)))).........((((	chr12:122999151-122999421(-)$1	1	45	62	24.1521
(.......)))......	chr7:30671751-30672031(+)$1	1	88	105	24.8043
.................	chr2:118853882-118854153(+)$1	1	207	224	28.7173
..(((........))))	chr19:54972712-54972964(+)$1	1	231	248	20.8913
.................	chr2:29023012-29023259(+)$1	1	71	88	28.3913
..........(((((.(	chr2:54114447-54114711(-)$1	1	87	104	20.2391
............(((((	chr9:32985880-32986136(-)$1	1	65	82	31.8695
))))((((.((((((((	chr3:33877406-33877681(+)$1	1	110	127	25.6739
...)))).)))......	chr2:198284881-198285151(-)$1	1	252	269	21.3260
((((.............	chr19:30477078-30477324(+)$1	1	80	97	26.3260
...((((((((((((.(	chr4:47916053-47916334(-)$1	1	80	97	24.4782
....))))..)))))))	chr2:198284817-198285068(-)$1	1	169	186	21.3260
))))))...))).))).	chr16:89874600-89874884(-)$1	1	70	87	23.8260
)))))))))))..((((	chr15:58891775-58892035(-)$1	1	68	85	27.0869
))))((((((((((.((	chr7:64291721-64291986(+)$1	1	84	101	21.6521
.................	chr1:54395477-54395728(-)$1	1	33	50	32.3043
................)	chr11:33182759-33182972(-)$1	1	39	56	21.2173
((.((((((((((...(	chr4:83275170-83275424(-)$1	1	86	103	19.4782
.............((((	chrX:135958675-135958924(-)$1	1	86	103	25.1304
........)))).))))	chr3:37407458-37407738(+)$1	1	93	110	20.6739
.......))))))))).	chr2:62112078-62112326(-)$1	1	88	105	26.2173
.................	chr7:23545057-23545298(-)$1	1	66	83	32.6304
.................	chr14:23794958-23795224(+)$1	1	243	260	31.8695
)))))............	chr17:38324339-38324620(+)$1	1	89	106	22.4130
)))....)))).)))))	chr12:22837307-22837576(+)$1	1	84	101	20.2391

#PSSM
U : 0.67	u : 0.23	G : 0.04	A : 0.02	C : 0.02	
U : 0.69	u : 0.23	C : 0.04	A : 0.02	
U : 0.23	G : 0.21	C : 0.17	A : 0.13	u : 0.13	g : 0.06	a : 0.04	
A : 0.52	u : 0.21	U : 0.15	C : 0.06	a : 0.04	
C : 0.39	u : 0.19	U : 0.15	A : 0.10	G : 0.08	a : 0.02	c : 0.02	g : 0.02	
U : 0.54	u : 0.28	G : 0.08	C : 0.04	A : 0.04	
U : 0.58	u : 0.26	C : 0.10	g : 0.02	A : 0.02	
U : 0.58	u : 0.26	A : 0.06	C : 0.06	c : 0.02	
U : 0.63	u : 0.26	A : 0.04	C : 0.02	G : 0.02	c : 0.02	
U : 0.52	u : 0.28	C : 0.08	A : 0.06	G : 0.04	
U : 0.65	u : 0.26	C : 0.06	g : 0.02	
U : 0.56	u : 0.28	C : 0.08	A : 0.06	
U : 0.63	u : 0.28	C : 0.04	A : 0.02	G : 0.02	
U : 0.67	u : 0.26	C : 0.04	g : 0.02	
U : 0.67	u : 0.28	C : 0.04	
U : 0.63	u : 0.28	G : 0.04	C : 0.04	
U : 0.39	u : 0.23	C : 0.23	A : 0.04	G : 0.04	c : 0.02	g : 0.02	

#score	1171.4347826086953
#seq	46
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_UTR_m2_run2.nuc.txt

#NT
UCUG	chr19:5653024-5653269(+)$1	245	70	74	11.9999
UCUG	chr17:16062011-16062287(-)$1	276	86	90	11.9999
UCUG	chr8:68007658-68007925(+)$1	267	3	7	11.9999
UCUG	chr3:50112618-50112861(+)$1	243	206	210	11.9999
ucug	chr9:131831068-131831319(+)$1	251	115	119	11.9999
UCUG	chr6:31729235-31729477(+)$1	242	30	34	11.9999
UCUG	chr3:20227477-20227782(-)$1	305	239	243	11.9999
UCUG	chr2:170668311-170668529(+)$1	218	134	138	11.9999
UCUG	chr6:136596703-136596939(-)$1	236	28	32	11.9999
UCUG	chr14:73577680-73577914(+)$1	234	1	5	11.9999
UCUG	chr2:169745918-169746143(-)$1	225	89	93	11.9999
UCUG	chr2:10101257-10101569(+)$1	312	49	53	11.9999
UCUG	chr7:33075449-33075698(-)$1	249	132	136	11.9999
UCUG	chr6:31759615-31759842(-)$1	227	25	29	11.9999
UCUG	chr11:116728408-116728737(-)$1	329	75	79	11.9999
UCUG	chr15:69072648-69072875(-)$1	227	39	43	11.9999
UCUG	chr22:22035489-22035731(+)$1	242	9	13	11.9999
UCUG	chr6:131998930-131999181(+)$1	251	55	59	11.9999
UCUG	chr18:29522623-29522895(-)$1	272	18	22	11.9999
UCUG	chr3:33686166-33686496(-)$1	330	84	88	11.9999
UCUG	chr17:53852061-53852316(+)$1	255	44	48	11.9999
UCUG	chr2:128044458-128044694(-)$1	236	36	40	11.9999
UCUG	chr4:68370833-68371061(-)$1	228	93	97	11.9999
UCUG	chr15:59185377-59185613(-)$1	236	143	147	11.9999
UCUG	chr14:91927657-91927990(-)$1	333	67	71	11.9999
UCUG	chr19:39936377-39936621(+)$1	244	229	233	11.9999
UCUG	chr11:95523333-95523596(-)$1	263	87	91	11.9999
UCUG	chr12:133252220-133252428(-)$1	208	27	31	11.9999
UCUG	chr1:235324181-235324484(-)$1	303	84	88	11.9999
UCUG	chr17:27233803-27234053(-)$1	250	197	201	11.9999
ucug	chr12:49761190-49761449(+)$1	259	26	30	11.9999
UCUG	chr2:3604284-3604534(-)$1	250	131	135	11.9999
UCUG	chr6:15533386-15533643(-)$1	257	4	8	11.9999
UCUG	chr8:28906725-28906997(+)$1	272	172	176	11.9999
ucug	chr3:69074612-69074862(-)$1	250	226	230	11.9999
UCUG	chr12:123001668-123001894(-)$1	226	168	172	11.9999
UCUG	chr6:31504242-31504460(-)$1	218	20	24	11.9999
UCUG	chr16:89350143-89350426(-)$1	283	3	7	11.9999
UCUG	chr3:158178628-158178893(+)$1	265	187	191	11.9999
UCUG	chr15:34678939-34679241(-)$1	302	128	132	11.9999
UCUG	chr16:732276-732503(+)$1	227	65	69	11.9999
UCUG	chr16:89758117-89758396(+)$1	279	82	86	11.9999
UCUG	chr3:9512124-9512387(+)$1	263	117	121	11.9999
UCUG	chr3:141626004-141626216(+)$1	212	57	61	11.9999
UCUG	chr3:107241720-107242047(+)$1	327	282	286	11.9999
UCUG	chr7:86792707-86792935(+)$1	228	138	142	11.9999
UCUG	chr12:105440449-105440691(-)$1	242	34	38	11.9999
UCUG	chr12:133245184-133245473(-)$1	289	114	118	11.9999
UCUG	chr3:47125119-47125373(-)$1	254	65	69	11.9999
UCUG	chr4:128905418-128905674(+)$1	256	123	127	11.9999
UCUG	chr15:34699676-34699910(-)$1	234	99	103	11.9999
UCUG	chr9:123239591-123239824(-)$1	233	167	171	11.9999
UCUG	chr11:66372738-66372980(+)$1	242	195	199	11.9999
UCUG	chr13:37582765-37582993(+)$1	228	139	143	11.9999
UCUG	chr12:56557375-56557614(-)$1	239	4	8	11.9999
UCUG	chr6:76343289-76343544(+)$1	255	19	23	11.9999
UCUG	chr3:25775262-25775491(-)$1	229	1	5	11.9999
UCUG	chr7:27824735-27825000(+)$1	265	8	12	11.9999
UCUG	chr7:11068207-11068501(+)$1	294	53	57	11.9999
UCUG	chr3:128848826-128849131(-)$1	305	41	45	11.9999
UCUG	chr7:155530801-155531085(+)$1	284	178	182	11.9999
UCUG	chr1:224581532-224581794(-)$1	262	58	62	11.9999
UCUG	chr14:103807198-103807527(+)$1	329	21	25	11.9999
UCUG	chr1:61553810-61554080(+)$1	270	39	43	11.9999
UCUG	chr2:232577065-232577269(+)$1	204	167	171	11.9999
UCUG	chr21:34123373-34123629(-)$1	256	14	18	11.9999
UCUG	chr1:235490127-235490369(-)$1	242	167	171	11.9999
UCUG	chr15:28537931-28538183(-)$1	252	8	12	11.9999
UCUG	chr5:137505933-137506197(-)$1	264	38	42	11.9999
UCUG	chr6:163982972-163983190(+)$1	218	91	95	11.9999
UCUG	chr7:151873844-151874061(-)$1	217	92	96	11.9999
UCUG	chr7:105148753-105149072(-)$1	319	265	269	11.9999
UCUG	chr17:40855674-40855938(-)$1	264	9	13	11.9999
UCUG	chr4:106154949-106155198(+)$1	249	236	240	11.9999
UCUG	chr1:150316551-150316797(+)$1	246	240	244	11.9999
UCUG	chr3:42674133-42674427(+)$1	294	225	229	11.9999
UCUG	chr11:3050432-3050764(-)$1	332	121	125	11.9999
UCUG	chr9:33256698-33256971(-)$1	273	70	74	11.9999
UCUG	chr15:29345945-29346258(+)$1	313	73	77	11.9999

#otherMatches

#Struct PSSM
:::i	chr11:65651972-65652244(-)$1	272	22	26	11.9999
ffff	chr19:5653024-5653269(+)$1	245	70	74	11.9999
MMEE	chr17:16062011-16062287(-)$1	276	86	90	11.9999
HHHH	chr8:68007658-68007925(+)$1	267	3	7	11.9999
ccdd	chr3:50112618-50112861(+)$1	243	206	210	11.9999
[ccc	chr9:131831068-131831319(+)$1	251	115	119	11.9999
"ggg	chr6:31729235-31729477(+)$1	242	30	34	11.9999
dddg	chr3:20227477-20227782(-)$1	305	239	243	11.9999
ddff	chr2:170668311-170668529(+)$1	218	134	138	11.9999
GGGG	chr6:136596703-136596939(-)$1	236	28	32	11.9999
{DDD	chr14:73577680-73577914(+)$1	234	1	5	11.9999
333b	chr2:169745918-169746143(-)$1	225	89	93	11.9999
cc$$	chr2:10101257-10101569(+)$1	312	49	53	11.9999
dd::	chr7:33075449-33075698(-)$1	249	132	136	11.9999
:::C	chr6:31759615-31759842(-)$1	227	25	29	11.9999
HHHH	chr11:116728408-116728737(-)$1	329	75	79	11.9999
iiii	chr15:69072648-69072875(-)$1	227	39	43	11.9999
CCC{	chr22:22035489-22035731(+)$1	242	9	13	11.9999
oodd	chr6:131998930-131999181(+)$1	251	55	59	11.9999
JJJJ	chr18:29522623-29522895(-)$1	272	18	22	11.9999
^ddd	chr3:33686166-33686496(-)$1	330	84	88	11.9999
i333	chr17:53852061-53852316(+)$1	255	44	48	11.9999
dddd	chr2:128044458-128044694(-)$1	236	36	40	11.9999
hhhh	chr4:68370833-68371061(-)$1	228	93	97	11.9999
""bb	chr15:59185377-59185613(-)$1	236	143	147	11.9999
dd))	chr14:91927657-91927990(-)$1	333	67	71	11.9999
]ddd	chr19:39936377-39936621(+)$1	244	229	233	11.9999
hhh[	chr11:95523333-95523596(-)$1	263	87	91	11.9999
eeep	chr12:133252220-133252428(-)$1	208	27	31	11.9999
{CCC	chr1:235324181-235324484(-)$1	303	84	88	11.9999
[ccc	chr17:27233803-27234053(-)$1	250	197	201	11.9999
iiil	chr12:49761190-49761449(+)$1	259	26	30	11.9999
nccc	chr2:3604284-3604534(-)$1	250	131	135	11.9999
::::	chr6:15533386-15533643(-)$1	257	4	8	11.9999
dddd	chr8:28906725-28906997(+)$1	272	172	176	11.9999
III_	chr3:69074612-69074862(-)$1	250	226	230	11.9999
ddd2	chr12:123001668-123001894(-)$1	226	168	172	11.9999
nnnn	chr6:31504242-31504460(-)$1	218	20	24	11.9999
FFFF	chr16:89350143-89350426(-)$1	283	3	7	11.9999
iii2	chr3:158178628-158178893(+)$1	265	187	191	11.9999
uuuc	chr15:34678939-34679241(-)$1	302	128	132	11.9999
IIII	chr16:732276-732503(+)$1	227	65	69	11.9999
::::	chr16:89758117-89758396(+)$1	279	82	86	11.9999
llhh	chr3:9512124-9512387(+)$1	263	117	121	11.9999
dd::	chr3:141626004-141626216(+)$1	212	57	61	11.9999
nnnb	chr3:107241720-107242047(+)$1	327	282	286	11.9999
JJJJ	chr7:86792707-86792935(+)$1	228	138	142	11.9999
cggg	chr12:105440449-105440691(-)$1	242	34	38	11.9999
pppb	chr12:133245184-133245473(-)$1	289	114	118	11.9999
ccc3	chr3:47125119-47125373(-)$1	254	65	69	11.9999
leee	chr4:128905418-128905674(+)$1	256	123	127	11.9999
eebb	chr15:34699676-34699910(-)$1	234	99	103	11.9999
/FFF	chr9:123239591-123239824(-)$1	233	167	171	11.9999
ccc:	chr11:66372738-66372980(+)$1	242	195	199	11.9999
Gccc	chr13:37582765-37582993(+)$1	228	139	143	11.9999
JJJJ	chr12:56557375-56557614(-)$1	239	4	8	11.9999
vccc	chr6:76343289-76343544(+)$1	255	19	23	11.9999
::GG	chr3:25775262-25775491(-)$1	229	1	5	11.9999
d[ff	chr7:27824735-27825000(+)$1	265	8	12	11.9999
CCCA	chr7:11068207-11068501(+)$1	294	53	57	11.9999
gggg	chr3:128848826-128849131(-)$1	305	41	45	11.9999
:::c	chr7:155530801-155531085(+)$1	284	178	182	11.9999
gggg	chr1:224581532-224581794(-)$1	262	58	62	11.9999
D:cc	chr14:103807198-103807527(+)$1	329	21	25	11.9999
IIII	chr1:61553810-61554080(+)$1	270	39	43	11.9999
dbb]	chr2:232577065-232577269(+)$1	204	167	171	11.9999
"""c	chr21:34123373-34123629(-)$1	256	14	18	11.9999
gggg	chr1:235490127-235490369(-)$1	242	167	171	11.9999
bb[c	chr15:28537931-28538183(-)$1	252	8	12	11.9999
HHHH	chr5:137505933-137506197(-)$1	264	38	42	11.9999
ddd:	chr6:163982972-163983190(+)$1	218	91	95	11.9999
dddd	chr7:151873844-151874061(-)$1	217	92	96	11.9999
ffff	chr7:105148753-105149072(-)$1	319	265	269	11.9999
bb##	chr17:40855674-40855938(-)$1	264	9	13	11.9999
ffff	chr4:106154949-106155198(+)$1	249	236	240	11.9999
qqdd	chr1:150316551-150316797(+)$1	246	240	244	11.9999
yyyb	chr3:42674133-42674427(+)$1	294	225	229	11.9999
9999	chr11:3050432-3050764(-)$1	332	121	125	11.9999
====	chr9:33256698-33256971(-)$1	273	70	74	11.9999
ca]b	chr15:29345945-29346258(+)$1	313	73	77	11.9999

#DB
...(	chr11:65651972-65652244(-)$1	1	22	26	11.9999
))))	chr19:5653024-5653269(+)$1	1	70	74	11.9999
..((	chr17:16062011-16062287(-)$1	1	86	90	11.9999
((((	chr8:68007658-68007925(+)$1	1	3	7	11.9999
))((	chr3:50112618-50112861(+)$1	1	206	210	11.9999
.(((	chr9:131831068-131831319(+)$1	1	115	119	11.9999
.(((	chr6:31729235-31729477(+)$1	1	30	34	11.9999
)))(	chr3:20227477-20227782(-)$1	1	239	243	11.9999
))((	chr2:170668311-170668529(+)$1	1	134	138	11.9999
((((	chr6:136596703-136596939(-)$1	1	28	32	11.9999
.(((	chr14:73577680-73577914(+)$1	1	1	5	11.9999
...)	chr2:169745918-169746143(-)$1	1	89	93	11.9999
((..	chr2:10101257-10101569(+)$1	1	49	53	11.9999
))..	chr7:33075449-33075698(-)$1	1	132	136	11.9999
...(	chr6:31759615-31759842(-)$1	1	25	29	11.9999
((((	chr11:116728408-116728737(-)$1	1	75	79	11.9999
))))	chr15:69072648-69072875(-)$1	1	39	43	11.9999
(((.	chr22:22035489-22035731(+)$1	1	9	13	11.9999
..))	chr6:131998930-131999181(+)$1	1	55	59	11.9999
((((	chr18:29522623-29522895(-)$1	1	18	22	11.9999
.)))	chr3:33686166-33686496(-)$1	1	84	88	11.9999
)...	chr17:53852061-53852316(+)$1	1	44	48	11.9999
))))	chr2:128044458-128044694(-)$1	1	36	40	11.9999
))))	chr4:68370833-68371061(-)$1	1	93	97	11.9999
..((	chr15:59185377-59185613(-)$1	1	143	147	11.9999
((..	chr14:91927657-91927990(-)$1	1	67	71	11.9999
.)))	chr19:39936377-39936621(+)$1	1	229	233	11.9999
(((.	chr11:95523333-95523596(-)$1	1	87	91	11.9999
(((.	chr12:133252220-133252428(-)$1	1	27	31	11.9999
.(((	chr1:235324181-235324484(-)$1	1	84	88	11.9999
.(((	chr17:27233803-27234053(-)$1	1	197	201	11.9999
(((.	chr12:49761190-49761449(+)$1	1	26	30	11.9999
.)))	chr2:3604284-3604534(-)$1	1	131	135	11.9999
....	chr6:15533386-15533643(-)$1	1	4	8	11.9999
))))	chr8:28906725-28906997(+)$1	1	172	176	11.9999
))).	chr3:69074612-69074862(-)$1	1	226	230	11.9999
))).	chr12:123001668-123001894(-)$1	1	168	172	11.9999
....	chr6:31504242-31504460(-)$1	1	20	24	11.9999
((((	chr16:89350143-89350426(-)$1	1	3	7	11.9999
))).	chr3:158178628-158178893(+)$1	1	187	191	11.9999
...)	chr15:34678939-34679241(-)$1	1	128	132	11.9999
((((	chr16:732276-732503(+)$1	1	65	69	11.9999
....	chr16:89758117-89758396(+)$1	1	82	86	11.9999
..))	chr3:9512124-9512387(+)$1	1	117	121	11.9999
))..	chr3:141626004-141626216(+)$1	1	57	61	11.9999
...)	chr3:107241720-107242047(+)$1	1	282	286	11.9999
))))	chr7:86792707-86792935(+)$1	1	138	142	11.9999
))))	chr12:105440449-105440691(-)$1	1	34	38	11.9999
...)	chr12:133245184-133245473(-)$1	1	114	118	11.9999
))).	chr3:47125119-47125373(-)$1	1	65	69	11.9999
.)))	chr4:128905418-128905674(+)$1	1	123	127	11.9999
))))	chr15:34699676-34699910(-)$1	1	99	103	11.9999
.)))	chr9:123239591-123239824(-)$1	1	167	171	11.9999
))).	chr11:66372738-66372980(+)$1	1	195	199	11.9999
((((	chr13:37582765-37582993(+)$1	1	139	143	11.9999
((((	chr12:56557375-56557614(-)$1	1	4	8	11.9999
.)))	chr6:76343289-76343544(+)$1	1	19	23	11.9999
..((	chr3:25775262-25775491(-)$1	1	1	5	11.9999
(.((	chr7:27824735-27825000(+)$1	1	8	12	11.9999
((((	chr7:11068207-11068501(+)$1	1	53	57	11.9999
((((	chr3:128848826-128849131(-)$1	1	41	45	11.9999
...(	chr7:155530801-155531085(+)$1	1	178	182	11.9999
((((	chr1:224581532-224581794(-)$1	1	58	62	11.9999
(.((	chr14:103807198-103807527(+)$1	1	21	25	11.9999
((((	chr1:61553810-61554080(+)$1	1	39	43	11.9999
))).	chr2:232577065-232577269(+)$1	1	167	171	11.9999
...(	chr21:34123373-34123629(-)$1	1	14	18	11.9999
))))	chr1:235490127-235490369(-)$1	1	167	171	11.9999
((.(	chr15:28537931-28538183(-)$1	1	8	12	11.9999
((((	chr5:137505933-137506197(-)$1	1	38	42	11.9999
))).	chr6:163982972-163983190(+)$1	1	91	95	11.9999
((((	chr7:151873844-151874061(-)$1	1	92	96	11.9999
))))	chr7:105148753-105149072(-)$1	1	265	269	11.9999
((..	chr17:40855674-40855938(-)$1	1	9	13	11.9999
))))	chr4:106154949-106155198(+)$1	1	236	240	11.9999
..))	chr1:150316551-150316797(+)$1	1	240	244	11.9999
...)	chr3:42674133-42674427(+)$1	1	225	229	11.9999
....	chr11:3050432-3050764(-)$1	1	121	125	11.9999
))))	chr9:33256698-33256971(-)$1	1	70	74	11.9999
)).)	chr15:29345945-29346258(+)$1	1	73	77	11.9999

#PSSM
U : 0.96	u : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	

#score	959.9999999999995
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_UTR_m1_run1.nuc.txt

#NT
uuuauuuauuu	chr2:100065697-100065909(-)$1	212	164	175	17.3617
UUGUUUUCUUU	chr5:137892110-137892364(-)$1	254	65	76	21.9361
UUUUUUUCCUU	chr2:162894746-162894975(-)$1	229	28	39	20.9787
UUUUUCUCUUU	chr1:52991747-52992074(-)$1	327	3	14	21.2978
uuuuuuuuuuu	chr15:43378081-43378297(-)$1	216	161	172	21.9361
UUGUUUUGUUU	chr14:96997745-96997992(+)$1	247	46	57	18.6382
UUUUGUUCUUU	chr8:141900621-141900937(-)$1	316	52	63	21.4042
UUUUUUGCUUU	chr2:72958220-72958477(-)$1	257	235	246	21.6170
UUUUUUUCUUU	chr14:81646529-81646775(-)$1	246	217	228	25.5531
UGUUUUUCUUC	chr10:64944290-64944515(-)$1	225	4	15	17.3617
UUUUUUCCUUU	chr2:61576285-61576515(-)$1	230	76	87	21.6170
UUUUAUUCUUU	chr14:76211734-76212001(+)$1	267	210	221	21.5106
GCUUUUUCUUU	chr5:179146568-179146781(+)$1	213	79	90	18.0000
UUGUUAUCUUU	chr17:62530675-62530963(+)$1	288	223	234	17.6808
CUUUUUCCUUU	chr5:125906372-125906607(-)$1	235	41	52	17.5744
UCUUUUUCUUU	chr21:34971348-34971676(-)$1	328	44	55	22.1489
UUUUUUCCUCU	chr2:43813741-43813973(-)$1	232	85	96	17.6808
UUUUAUACUUU	chr5:54964942-54965250(-)$1	308	77	88	17.3617
UUCUUUUCUUU	chr6:4127894-4128113(-)$1	219	15	26	21.4042
AUGUUUUCUUU	chr12:30893851-30894114(-)$1	263	167	178	18.1063
UUUUUUUCUUU	chr12:77208839-77209097(+)$1	258	63	74	25.5531
UUUUUUUCUUG	chr9:90256840-90257074(+)$1	234	18	29	21.0851
aauuuuuCUUU	chr10:104860890-104861154(-)$1	264	57	68	18.5319
UCUUUUUCUGU	chr3:136240036-136240300(-)$1	264	23	34	18.0000
AUUUUUUCUUU	chr11:95508981-95509287(-)$1	306	79	90	21.7234
UUUCUUUCUCU	chr18:44435427-44435635(-)$1	208	37	48	17.3617
UUUUUUGGUUU	chr8:124358848-124359083(-)$1	235	77	88	18.3191
UAUUUUUCUUU	chr6:108250518-108250754(-)$1	236	17	28	22.3617
UUUUUUUCUUU	chrX:30726114-30726351(+)$1	237	38	49	25.5531
UAUUUUUCUCU	chr8:74600823-74601149(-)$1	326	24	35	18.4255
UUUUUUUUUUU	chr5:179155625-179155924(+)$1	299	282	293	21.9361
UUUUUGUGUUU	chr2:102791968-102792216(+)$1	248	47	58	17.8936
uuucuuucuuu	chr12:49888466-49888768(+)$1	302	14	25	21.2978
UUUUGUUGUUU	chr11:11941817-11942140(+)$1	323	51	62	18.1063
UUUUUCUCUUA	chr14:31067638-31067907(+)$1	269	253	264	16.9361
UUUGAUUCUUU	chr16:8898522-8898802(+)$1	280	57	68	17.2553
UAUUUUUUUUU	chr14:81651772-81652067(-)$1	295	38	49	18.7446
UUGUUUUGUUU	chrX:30737435-30737655(+)$1	220	74	85	18.6382
UAUUUUGCUUU	chr10:123673254-123673513(-)$1	259	89	100	18.4255
uuuuuuuCUUA	chr4:128851733-128852006(-)$1	273	22	33	21.1914
UUUGUAUCUUU	chr17:45734125-45734341(+)$1	216	69	80	17.0425
UUUUCUUCUUU	chr2:182766509-182766778(+)$1	269	27	38	21.2978
CUUUUUUCUUU	chr7:148506350-148506579(-)$1	229	82	93	21.5106
UCuuuuuguuu	chr11:62564554-62564795(-)$1	241	215	226	18.8510
UAUUUUUCUGU	chr8:23306260-23306537(-)$1	277	218	229	18.2127
AUGUUUUCUUU	chr2:61621945-61622193(-)$1	248	35	46	18.1063

#otherMatches

#Struct PSSM
FFFKKDDDDAH	chr14:56103076-56103316(+)$1	240	15	26	17.0425
hhh4444iiii	chr2:100065697-100065909(-)$1	212	164	175	17.3617
DDDD=======	chr5:137892110-137892364(-)$1	254	65	76	21.9361
JJJJJJJJJJg	chr2:162894746-162894975(-)$1	229	28	39	20.9787
:::EEEEEKKF	chr1:52991747-52992074(-)$1	327	3	14	21.2978
f55555eeeee	chr15:43378081-43378297(-)$1	216	161	172	21.9361
=========%%	chr14:96997745-96997992(+)$1	247	46	57	18.6382
iiiiiiinnnn	chr8:141900621-141900937(-)$1	316	52	63	21.4042
qqqqdddd:::	chr2:72958220-72958477(-)$1	257	235	246	21.6170
EE::iiiiiii	chr14:81646529-81646775(-)$1	246	217	228	25.5531
::::::eeeee	chr10:64944290-64944515(-)$1	225	4	15	17.3617
===========	chr2:61576285-61576515(-)$1	230	76	87	21.6170
>>>>>>>>>>>	chr14:76211734-76212001(+)$1	267	210	221	21.5106
========[dd	chr5:179146568-179146781(+)$1	213	79	90	18.0000
dddqqqqqqqq	chr17:62530675-62530963(+)$1	288	223	234	17.6808
GGGG:ddddmm	chr5:125906372-125906607(-)$1	235	41	52	17.5744
ddd::::::::	chr21:34971348-34971676(-)$1	328	44	55	22.1489
fff:::cccmm	chr2:43813741-43813973(-)$1	232	85	96	17.6808
hhhhhh]bb::	chr5:54964942-54965250(-)$1	308	77	88	17.3617
B{CCCKKEEEE	chr6:4127894-4128113(-)$1	219	15	26	21.4042
ee333gggggg	chr12:30893851-30894114(-)$1	263	167	178	18.1063
JJJJJJJJJJJ	chr12:77208839-77209097(+)$1	258	63	74	25.5531
MHHHHHHHH{B	chr9:90256840-90257074(+)$1	234	18	29	21.0851
ii:::::::::	chr10:104860890-104861154(-)$1	264	57	68	18.5319
::dddd[ccc"	chr3:136240036-136240300(-)$1	264	23	34	18.0000
===]ccceeee	chr11:95508981-95509287(-)$1	306	79	90	21.7234
::::hhhhhhh	chr18:44435427-44435635(-)$1	208	37	48	17.3617
=========%%	chr8:124358848-124359083(-)$1	235	77	88	18.3191
iiiiiiiiiee	chr6:108250518-108250754(-)$1	236	17	28	22.3617
^^^^^^^^^^^	chrX:30726114-30726351(+)$1	237	38	49	25.5531
hhhh$$$$$ee	chr8:74600823-74601149(-)$1	326	24	35	18.4255
IIIIIII::::	chr5:179155625-179155924(+)$1	299	282	293	21.9361
emmmmeeeee3	chr2:102791968-102792216(+)$1	248	47	58	17.8936
LLFFFFFFKKE	chr12:49888466-49888768(+)$1	302	14	25	21.2978
tggggggg22c	chr11:11941817-11942140(+)$1	323	51	62	18.1063
ffffffHHHHH	chr14:31067638-31067907(+)$1	269	253	264	16.9361
eee]hhhhhhh	chr16:8898522-8898802(+)$1	280	57	68	17.2553
ffffftttttt	chr14:81651772-81652067(-)$1	295	38	49	18.7446
dddd333bbhh	chrX:30737435-30737655(+)$1	220	74	85	18.6382
:::::::::ee	chr10:123673254-123673513(-)$1	259	89	100	18.4255
nnbb]ffffff	chr4:128851733-128852006(-)$1	273	22	33	21.1914
========yyy	chr17:45734125-45734341(+)$1	216	69	80	17.0425
::IIIIIIIII	chr2:182766509-182766778(+)$1	269	27	38	21.2978
ee####cccmm	chr7:148506350-148506579(-)$1	229	82	93	21.5106
DDDDGGGGGGG	chr11:62564554-62564795(-)$1	241	215	226	18.8510
:::::::::::	chr8:23306260-23306537(-)$1	277	218	229	18.2127
4dddd:::::D	chr2:61621945-61622193(-)$1	248	35	46	18.1063

#DB
(((..((((((	chr14:56103076-56103316(+)$1	1	15	26	17.0425
)))....))))	chr2:100065697-100065909(-)$1	1	164	175	17.3617
(((((((((((	chr5:137892110-137892364(-)$1	1	65	76	21.9361
(((((((((((	chr2:162894746-162894975(-)$1	1	28	39	20.9787
...(((((..(	chr1:52991747-52992074(-)$1	1	3	14	21.2978
).....)))))	chr15:43378081-43378297(-)$1	1	161	172	21.9361
(((((((((..	chr14:96997745-96997992(+)$1	1	46	57	18.6382
(((((((....	chr8:141900621-141900937(-)$1	1	52	63	21.4042
....))))...	chr2:72958220-72958477(-)$1	1	235	246	21.6170
))..(((((((	chr14:81646529-81646775(-)$1	1	217	228	25.5531
......(((((	chr10:64944290-64944515(-)$1	1	4	15	17.3617
(((((((((((	chr2:61576285-61576515(-)$1	1	76	87	21.6170
...........	chr14:76211734-76212001(+)$1	1	210	221	21.5106
((((((((.((	chr5:179146568-179146781(+)$1	1	79	90	18.0000
(((........	chr17:62530675-62530963(+)$1	1	223	234	17.6808
((((.((((..	chr5:125906372-125906607(-)$1	1	41	52	17.5744
)))........	chr21:34971348-34971676(-)$1	1	44	55	22.1489
)))...(((..	chr2:43813741-43813973(-)$1	1	85	96	17.6808
)))))).))..	chr5:54964942-54965250(-)$1	1	77	88	17.3617
(.(((..((((	chr6:4127894-4128113(-)$1	1	15	26	21.4042
))...))))))	chr12:30893851-30894114(-)$1	1	167	178	18.1063
(((((((((((	chr12:77208839-77209097(+)$1	1	63	74	25.5531
.((((((((.(	chr9:90256840-90257074(+)$1	1	18	29	21.0851
)).........	chr10:104860890-104861154(-)$1	1	57	68	18.5319
..((((.(((.	chr3:136240036-136240300(-)$1	1	23	34	18.0000
))).)))((((	chr11:95508981-95509287(-)$1	1	79	90	21.7234
....(((((((	chr18:44435427-44435635(-)$1	1	37	48	17.3617
(((((((((..	chr8:124358848-124359083(-)$1	1	77	88	18.3191
(((((((((((	chr6:108250518-108250754(-)$1	1	17	28	22.3617
...........	chrX:30726114-30726351(+)$1	1	38	49	25.5531
((((.....((	chr8:74600823-74601149(-)$1	1	24	35	18.4255
)))))))....	chr5:179155625-179155924(+)$1	1	282	293	21.9361
(....))))).	chr2:102791968-102792216(+)$1	1	47	58	17.8936
..((((((..(	chr12:49888466-49888768(+)$1	1	14	25	21.2978
.)))))))..)	chr11:11941817-11942140(+)$1	1	51	62	18.1063
)))))))))))	chr14:31067638-31067907(+)$1	1	253	264	16.9361
))).)))))))	chr16:8898522-8898802(+)$1	1	57	68	17.2553
(((((......	chr14:81651772-81652067(-)$1	1	38	49	18.7446
))))...))))	chrX:30737435-30737655(+)$1	1	74	85	18.6382
.........((	chr10:123673254-123673513(-)$1	1	89	100	18.4255
..)).))))))	chr4:128851733-128852006(-)$1	1	22	33	21.1914
((((((((...	chr17:45734125-45734341(+)$1	1	69	80	17.0425
..(((((((((	chr2:182766509-182766778(+)$1	1	27	38	21.2978
((....(((..	chr7:148506350-148506579(-)$1	1	82	93	21.5106
)))))))))))	chr11:62564554-62564795(-)$1	1	215	226	18.8510
...........	chr8:23306260-23306537(-)$1	1	218	229	18.2127
.)))).....(	chr2:61621945-61622193(-)$1	1	35	46	18.1063

#PSSM
U : 0.76	u : 0.08	A : 0.06	C : 0.04	G : 0.02	a : 0.02	
U : 0.68	A : 0.10	u : 0.08	C : 0.08	G : 0.02	a : 0.02	
U : 0.72	u : 0.12	G : 0.12	C : 0.02	
U : 0.80	u : 0.08	G : 0.04	a : 0.02	C : 0.02	c : 0.02	
U : 0.74	u : 0.12	A : 0.06	G : 0.04	C : 0.02	
U : 0.76	u : 0.12	C : 0.04	A : 0.04	G : 0.02	
U : 0.72	u : 0.12	G : 0.06	C : 0.06	A : 0.02	
C : 0.76	G : 0.10	U : 0.04	a : 0.02	u : 0.02	c : 0.02	g : 0.02	
U : 0.87	u : 0.08	C : 0.04	
U : 0.78	C : 0.08	u : 0.08	G : 0.04	
U : 0.82	u : 0.08	A : 0.04	C : 0.02	G : 0.02	

#score	930.5744680851068
#seq	47
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_transcript_m2_run1.nuc.txt

#NT
GAG	chr19:34883613-34883844(+)$1	231	4	7	8.9999
GAG	chr3:186502547-186502752(+)$1	205	82	85	8.9999
GAG	chr19:34882453-34882695(+)$1	242	15	18	8.9999
GAG	chr19:34882151-34882418(+)$1	267	16	19	8.9999
GAG	chr19:34882872-34883086(+)$1	214	19	22	8.9999
GAG	chr17:76124237-76124487(-)$1	250	3	6	8.9999
GAG	chr11:65212078-65212315(+)$1	237	5	8	8.9999
GAG	chr3:186502539-186502747(+)$1	208	90	93	8.9999
GAG	chr19:34882124-34882348(+)$1	224	17	20	8.9999
GAG	chr19:34882664-34882872(+)$1	208	5	8	8.9999
GAG	chr9:139564819-139565080(+)$1	261	88	91	8.9999
GAG	chr16:10479850-10480144(+)$1	294	30	33	8.9999
GAG	chrX:13333164-13333434(+)$1	270	227	230	8.9999
GAG	chr3:13418973-13419248(-)$1	275	4	7	8.9999
gag	chr1:161582462-161582672(+)$1	210	64	67	8.9999
GAG	chr9:94667079-94667321(-)$1	242	158	161	8.9999
GAG	chr19:34882747-34882969(+)$1	222	0	3	8.9999
GAG	chr16:1543512-1543869(+)$1	357	60	63	8.9999
GAG	chr4:1342730-1343009(+)$1	279	185	188	8.9999
GAG	chr17:17120226-17120434(-)$1	208	11	14	8.9999
GAG	chr15:91446141-91446421(+)$1	280	7	10	8.9999
gag	chr1:161582472-161582686(+)$1	214	54	57	8.9999
GAG	chr1:53748441-53748719(-)$1	278	46	49	8.9999
gag	chr19:34876226-34876441(+)$1	215	11	14	8.9999
GAG	chr19:49607697-49608001(+)$1	304	3	6	8.9999
GAG	chr17:46051772-46052129(+)$1	357	2	5	8.9999
GAG	chr19:34882086-34882292(+)$1	206	13	16	8.9999
gag	chr10:72505528-72505779(+)$1	251	47	50	8.9999
GAG	chr11:65193769-65194006(+)$1	237	32	35	8.9999
GAg	chr16:31196228-31196553(+)$1	325	59	62	8.9999
GAg	chr16:31196353-31196604(+)$1	251	23	26	8.9999
GAG	chr17:25635567-25635798(+)$1	231	112	115	8.9999
GAG	chr7:112108980-112109273(+)$1	293	70	73	8.9999
GAG	chr11:65191209-65191426(+)$1	217	31	34	8.9999
GAG	chr16:600962-601189(+)$1	227	6	9	8.9999
GAG	chr19:34874952-34875167(+)$1	215	35	38	8.9999
GAG	chr11:65191157-65191404(+)$1	247	83	86	8.9999
GAG	chr1:173835914-173836118(-)$1	204	31	34	8.9999
GAG	chr21:45739476-45739747(+)$1	271	6	9	8.9999
GAG	chr19:34882221-34882442(+)$1	221	20	23	8.9999
GAG	chr3:185531500-185531740(-)$1	240	154	157	8.9999
GAG	chr9:19379314-19379566(-)$1	252	28	31	8.9999
gag	chr15:45490664-45490874(-)$1	210	60	63	8.9999
GAG	chr4:53578779-53579006(+)$1	227	15	18	8.9999
GAG	chr5:179048683-179048925(-)$1	242	46	49	8.9999
GAG	chr19:49606821-49607075(+)$1	254	67	70	8.9999
GAG	chr6:26027329-26027553(-)$1	224	113	116	8.9999
GAG	chr19:34883038-34883259(+)$1	221	3	6	8.9999
gag	chr19:34879339-34879565(+)$1	226	23	26	8.9999
gag	chr22:49974000-49974249(-)$1	249	33	36	8.9999
GAG	chr6:26124414-26124680(+)$1	266	5	8	8.9999
GAG	chr22:19486925-19487288(+)$1	363	38	41	8.9999
GAG	chr19:34882836-34883044(+)$1	208	8	11	8.9999
gag	chr20:45886019-45886271(-)$1	252	0	3	8.9999
GAG	chr16:28841029-28841298(+)$1	269	177	180	8.9999
GAG	chr19:34883333-34883572(+)$1	239	34	37	8.9999
gag	chr16:88995736-88996013(-)$1	277	122	125	8.9999
GAG	chr16:2215659-2215933(+)$1	274	67	70	8.9999
GAG	chr19:34881314-34881531(+)$1	217	71	74	8.9999
GAG	chr2:97559787-97560032(-)$1	245	7	10	8.9999
GAG	chr19:34874576-34874796(+)$1	220	15	18	8.9999
GAG	chr10:32197496-32197766(-)$1	270	34	37	8.9999
GAG	chr19:34883660-34883884(+)$1	224	7	10	8.9999
GAG	chr15:69071905-69072177(-)$1	272	45	48	8.9999
gag	chr1:53748917-53749150(-)$1	233	170	173	8.9999
GAG	chr19:34874596-34874818(+)$1	222	10	13	8.9999
GAG	chr22:50694468-50694722(-)$1	254	56	59	8.9999
GAG	chr11:34080086-34080372(+)$1	286	10	13	8.9999
gag	chr20:45885893-45886141(-)$1	248	15	18	8.9999
GAG	chr11:66384521-66384809(+)$1	288	15	18	8.9999
GAG	chr17:61909469-61909689(-)$1	220	24	27	8.9999
GAG	chr19:34882100-34882324(+)$1	224	17	20	8.9999
gag	chr22:49974288-49974543(-)$1	255	20	23	8.9999
GAG	chr8:56986292-56986545(-)$1	253	92	95	8.9999
GAG	chr11:65191231-65191452(+)$1	221	9	12	8.9999
GAG	chr19:34882617-34882831(+)$1	214	2	5	8.9999
gag	chr16:88995823-88996058(-)$1	235	167	170	8.9999
gag	chr20:49211496-49211749(-)$1	253	5	8	8.9999
GAG	chr2:132041324-132041576(+)$1	252	101	104	8.9999
gag	chr2:132041472-132041737(+)$1	265	10	13	8.9999
GAG	chr19:34874315-34874545(+)$1	230	62	65	8.9999
GAG	chr6:26189139-26189391(-)$1	252	243	246	8.9999
GAG	chr19:34882092-34882300(+)$1	208	7	10	8.9999
GAG	chr21:11085335-11085625(-)$1	290	233	236	8.9999
GAG	chr11:65194174-65194391(+)$1	217	11	14	8.9999
gag	chr10:72505502-72505728(+)$1	226	73	76	8.9999
gag	chr5:176340932-176341199(-)$1	267	28	31	8.9999
GAG	chr8:23412155-23412438(+)$1	283	68	71	8.9999
GAG	chr2:178081371-178081611(+)$1	240	216	219	8.9999
GAG	chr19:34882495-34882702(+)$1	207	23	26	8.9999
GAG	chr7:26233101-26233345(-)$1	244	43	46	8.9999
GAG	chr19:34881126-34881354(+)$1	228	20	23	8.9999
GAG	chr19:34882902-34883118(+)$1	216	39	42	8.9999
gag	chr17:78289332-78289613(+)$1	281	4	7	8.9999
GAG	chr5:53340810-53341095(-)$1	285	118	121	8.9999
gag	chr9:94667149-94667408(-)$1	259	25	28	8.9999

#otherMatches

#Struct PSSM
HHH	chr1:1327778-1328069(-)$1	291	110	113	8.9999
::f	chr19:34883613-34883844(+)$1	231	4	7	8.9999
bb6	chr3:186502547-186502752(+)$1	205	82	85	8.9999
mmm	chr19:34882453-34882695(+)$1	242	15	18	8.9999
[cc	chr19:34882151-34882418(+)$1	267	16	19	8.9999
ddd	chr19:34882872-34883086(+)$1	214	19	22	8.9999
B{B	chr17:76124237-76124487(-)$1	250	3	6	8.9999
FA{	chr11:65212078-65212315(+)$1	237	5	8	8.9999
bb6	chr3:186502539-186502747(+)$1	208	90	93	8.9999
!!c	chr19:34882124-34882348(+)$1	224	17	20	8.9999
:::	chr19:34882664-34882872(+)$1	208	5	8	8.9999
ttt	chr9:139564819-139565080(+)$1	261	88	91	8.9999
mmm	chr16:10479850-10480144(+)$1	294	30	33	8.9999
[bb	chrX:13333164-13333434(+)$1	270	227	230	8.9999
E::	chr3:13418973-13419248(-)$1	275	4	7	8.9999
nnn	chr1:161582462-161582672(+)$1	210	64	67	8.9999
}CC	chr9:94667079-94667321(-)$1	242	158	161	8.9999
:::	chr19:34882747-34882969(+)$1	222	0	3	8.9999
cc3	chr16:1543512-1543869(+)$1	357	60	63	8.9999
eee	chr4:1342730-1343009(+)$1	279	185	188	8.9999
""c	chr17:17120226-17120434(-)$1	208	11	14	8.9999
###	chr15:91446141-91446421(+)$1	280	7	10	8.9999
nnn	chr1:161582472-161582686(+)$1	214	54	57	8.9999
eee	chr1:53748441-53748719(-)$1	278	46	49	8.9999
ddd	chr19:34876226-34876441(+)$1	215	11	14	8.9999
{AK	chr19:49607697-49608001(+)$1	304	3	6	8.9999
B::	chr17:46051772-46052129(+)$1	357	2	5	8.9999
rrr	chr19:34882086-34882292(+)$1	206	13	16	8.9999
a33	chr10:72505528-72505779(+)$1	251	47	50	8.9999
==[	chr11:65193769-65194006(+)$1	237	32	35	8.9999
h[b	chr16:31196228-31196553(+)$1	325	59	62	8.9999
{A:	chr16:31196353-31196604(+)$1	251	23	26	8.9999
ooo	chr17:25635567-25635798(+)$1	231	112	115	8.9999
ddd	chr7:112108980-112109273(+)$1	293	70	73	8.9999
mmm	chr11:65191209-65191426(+)$1	217	31	34	8.9999
ccc	chr16:600962-601189(+)$1	227	6	9	8.9999
ee[	chr19:34874952-34875167(+)$1	215	35	38	8.9999
mmm	chr11:65191157-65191404(+)$1	247	83	86	8.9999
:dd	chr1:173835914-173836118(-)$1	204	31	34	8.9999
dmm	chr21:45739476-45739747(+)$1	271	6	9	8.9999
22c	chr19:34882221-34882442(+)$1	221	20	23	8.9999
ddd	chr3:185531500-185531740(-)$1	240	154	157	8.9999
$$$	chr9:19379314-19379566(-)$1	252	28	31	8.9999
eee	chr15:45490664-45490874(-)$1	210	60	63	8.9999
b""	chr4:53578779-53579006(+)$1	227	15	18	8.9999
ggg	chr5:179048683-179048925(-)$1	242	46	49	8.9999
hhh	chr19:49606821-49607075(+)$1	254	67	70	8.9999
iii	chr6:26027329-26027553(-)$1	224	113	116	8.9999
eee	chr19:34883038-34883259(+)$1	221	3	6	8.9999
e[b	chr19:34879339-34879565(+)$1	226	23	26	8.9999
ooo	chr22:49974000-49974249(-)$1	249	33	36	8.9999
III	chr6:26124414-26124680(+)$1	266	5	8	8.9999
""c	chr22:19486925-19487288(+)$1	363	38	41	8.9999
fff	chr19:34882836-34883044(+)$1	208	8	11	8.9999
:::	chr20:45886019-45886271(-)$1	252	0	3	8.9999
eee	chr16:28841029-28841298(+)$1	269	177	180	8.9999
::f	chr19:34883333-34883572(+)$1	239	34	37	8.9999
bb#	chr16:88995736-88996013(-)$1	277	122	125	8.9999
gg]	chr16:2215659-2215933(+)$1	274	67	70	8.9999
oof	chr19:34881314-34881531(+)$1	217	71	74	8.9999
GGG	chr2:97559787-97560032(-)$1	245	7	10	8.9999
MMC	chr19:34874576-34874796(+)$1	220	15	18	8.9999
LLL	chr10:32197496-32197766(-)$1	270	34	37	8.9999
:A{	chr19:34883660-34883884(+)$1	224	7	10	8.9999
ddd	chr15:69071905-69072177(-)$1	272	45	48	8.9999
22f	chr1:53748917-53749150(-)$1	233	170	173	8.9999
MMM	chr19:34874596-34874818(+)$1	222	10	13	8.9999
===	chr22:50694468-50694722(-)$1	254	56	59	8.9999
:gg	chr11:34080086-34080372(+)$1	286	10	13	8.9999
""f	chr20:45885893-45886141(-)$1	248	15	18	8.9999
ccc	chr11:66384521-66384809(+)$1	288	15	18	8.9999
III	chr17:61909469-61909689(-)$1	220	24	27	8.9999
{CC	chr19:34882100-34882324(+)$1	224	17	20	8.9999
{FF	chr22:49974288-49974543(-)$1	255	20	23	8.9999
ccc	chr8:56986292-56986545(-)$1	253	92	95	8.9999
CCC	chr11:65191231-65191452(+)$1	221	9	12	8.9999
:::	chr19:34882617-34882831(+)$1	214	2	5	8.9999
ggg	chr16:88995823-88996058(-)$1	235	167	170	8.9999
===	chr20:49211496-49211749(-)$1	253	5	8	8.9999
fff	chr2:132041324-132041576(+)$1	252	101	104	8.9999
ccf	chr2:132041472-132041737(+)$1	265	10	13	8.9999
c!!	chr19:34874315-34874545(+)$1	230	62	65	8.9999
eee	chr6:26189139-26189391(-)$1	252	243	246	8.9999
:ee	chr19:34882092-34882300(+)$1	208	7	10	8.9999
22a	chr21:11085335-11085625(-)$1	290	233	236	8.9999
DD{	chr11:65194174-65194391(+)$1	217	11	14	8.9999
a33	chr10:72505502-72505728(+)$1	226	73	76	8.9999
xxx	chr5:176340932-176341199(-)$1	267	28	31	8.9999
!gg	chr8:23412155-23412438(+)$1	283	68	71	8.9999
YYA	chr2:178081371-178081611(+)$1	240	216	219	8.9999
::=	chr19:34882495-34882702(+)$1	207	23	26	8.9999
ldd	chr7:26233101-26233345(-)$1	244	43	46	8.9999
EEE	chr19:34881126-34881354(+)$1	228	20	23	8.9999
[cc	chr19:34882902-34883118(+)$1	216	39	42	8.9999
###	chr17:78289332-78289613(+)$1	281	4	7	8.9999
::f	chr5:53340810-53341095(-)$1	285	118	121	8.9999
DDD	chr9:94667149-94667408(-)$1	259	25	28	8.9999

#DB
)))	chr1:1327778-1328069(-)$1	1	110	113	8.9999
..(	chr19:34883613-34883844(+)$1	1	4	7	8.9999
)).	chr3:186502547-186502752(+)$1	1	82	85	8.9999
...	chr19:34882453-34882695(+)$1	1	15	18	8.9999
.((	chr19:34882151-34882418(+)$1	1	16	19	8.9999
)))	chr19:34882872-34883086(+)$1	1	19	22	8.9999
(.(	chr17:76124237-76124487(-)$1	1	3	6	8.9999
((.	chr11:65212078-65212315(+)$1	1	5	8	8.9999
)).	chr3:186502539-186502747(+)$1	1	90	93	8.9999
..(	chr19:34882124-34882348(+)$1	1	17	20	8.9999
...	chr19:34882664-34882872(+)$1	1	5	8	8.9999
...	chr9:139564819-139565080(+)$1	1	88	91	8.9999
...	chr16:10479850-10480144(+)$1	1	30	33	8.9999
.((	chrX:13333164-13333434(+)$1	1	227	230	8.9999
(..	chr3:13418973-13419248(-)$1	1	4	7	8.9999
...	chr1:161582462-161582672(+)$1	1	64	67	8.9999
.))	chr9:94667079-94667321(-)$1	1	158	161	8.9999
...	chr19:34882747-34882969(+)$1	1	0	3	8.9999
)).	chr16:1543512-1543869(+)$1	1	60	63	8.9999
(((	chr4:1342730-1343009(+)$1	1	185	188	8.9999
..(	chr17:17120226-17120434(-)$1	1	11	14	8.9999
...	chr15:91446141-91446421(+)$1	1	7	10	8.9999
...	chr1:161582472-161582686(+)$1	1	54	57	8.9999
(((	chr1:53748441-53748719(-)$1	1	46	49	8.9999
(((	chr19:34876226-34876441(+)$1	1	11	14	8.9999
.(.	chr19:49607697-49608001(+)$1	1	3	6	8.9999
(..	chr17:46051772-46052129(+)$1	1	2	5	8.9999
...	chr19:34882086-34882292(+)$1	1	13	16	8.9999
)..	chr10:72505528-72505779(+)$1	1	47	50	8.9999
((.	chr11:65193769-65194006(+)$1	1	32	35	8.9999
(.(	chr16:31196228-31196553(+)$1	1	59	62	8.9999
.(.	chr16:31196353-31196604(+)$1	1	23	26	8.9999
...	chr17:25635567-25635798(+)$1	1	112	115	8.9999
)))	chr7:112108980-112109273(+)$1	1	70	73	8.9999
...	chr11:65191209-65191426(+)$1	1	31	34	8.9999
(((	chr16:600962-601189(+)$1	1	6	9	8.9999
((.	chr19:34874952-34875167(+)$1	1	35	38	8.9999
...	chr11:65191157-65191404(+)$1	1	83	86	8.9999
.((	chr1:173835914-173836118(-)$1	1	31	34	8.9999
(..	chr21:45739476-45739747(+)$1	1	6	9	8.9999
..)	chr19:34882221-34882442(+)$1	1	20	23	8.9999
)))	chr3:185531500-185531740(-)$1	1	154	157	8.9999
...	chr9:19379314-19379566(-)$1	1	28	31	8.9999
)))	chr15:45490664-45490874(-)$1	1	60	63	8.9999
(..	chr4:53578779-53579006(+)$1	1	15	18	8.9999
)))	chr5:179048683-179048925(-)$1	1	46	49	8.9999
)))	chr19:49606821-49607075(+)$1	1	67	70	8.9999
)))	chr6:26027329-26027553(-)$1	1	113	116	8.9999
(((	chr19:34883038-34883259(+)$1	1	3	6	8.9999
(.(	chr19:34879339-34879565(+)$1	1	23	26	8.9999
...	chr22:49974000-49974249(-)$1	1	33	36	8.9999
(((	chr6:26124414-26124680(+)$1	1	5	8	8.9999
..(	chr22:19486925-19487288(+)$1	1	38	41	8.9999
(((	chr19:34882836-34883044(+)$1	1	8	11	8.9999
...	chr20:45886019-45886271(-)$1	1	0	3	8.9999
)))	chr16:28841029-28841298(+)$1	1	177	180	8.9999
..(	chr19:34883333-34883572(+)$1	1	34	37	8.9999
((.	chr16:88995736-88996013(-)$1	1	122	125	8.9999
)).	chr16:2215659-2215933(+)$1	1	67	70	8.9999
..)	chr19:34881314-34881531(+)$1	1	71	74	8.9999
(((	chr2:97559787-97560032(-)$1	1	7	10	8.9999
..(	chr19:34874576-34874796(+)$1	1	15	18	8.9999
...	chr10:32197496-32197766(-)$1	1	34	37	8.9999
.(.	chr19:34883660-34883884(+)$1	1	7	10	8.9999
(((	chr15:69071905-69072177(-)$1	1	45	48	8.9999
..)	chr1:53748917-53749150(-)$1	1	170	173	8.9999
...	chr19:34874596-34874818(+)$1	1	10	13	8.9999
(((	chr22:50694468-50694722(-)$1	1	56	59	8.9999
.((	chr11:34080086-34080372(+)$1	1	10	13	8.9999
..(	chr20:45885893-45886141(-)$1	1	15	18	8.9999
(((	chr11:66384521-66384809(+)$1	1	15	18	8.9999
(((	chr17:61909469-61909689(-)$1	1	24	27	8.9999
.((	chr19:34882100-34882324(+)$1	1	17	20	8.9999
.((	chr22:49974288-49974543(-)$1	1	20	23	8.9999
(((	chr8:56986292-56986545(-)$1	1	92	95	8.9999
(((	chr11:65191231-65191452(+)$1	1	9	12	8.9999
...	chr19:34882617-34882831(+)$1	1	2	5	8.9999
)))	chr16:88995823-88996058(-)$1	1	167	170	8.9999
(((	chr20:49211496-49211749(-)$1	1	5	8	8.9999
(((	chr2:132041324-132041576(+)$1	1	101	104	8.9999
(((	chr2:132041472-132041737(+)$1	1	10	13	8.9999
(..	chr19:34874315-34874545(+)$1	1	62	65	8.9999
)))	chr6:26189139-26189391(-)$1	1	243	246	8.9999
.((	chr19:34882092-34882300(+)$1	1	7	10	8.9999
..)	chr21:11085335-11085625(-)$1	1	233	236	8.9999
((.	chr11:65194174-65194391(+)$1	1	11	14	8.9999
)..	chr10:72505502-72505728(+)$1	1	73	76	8.9999
...	chr5:176340932-176341199(-)$1	1	28	31	8.9999
.((	chr8:23412155-23412438(+)$1	1	68	71	8.9999
..)	chr2:178081371-178081611(+)$1	1	216	219	8.9999
..(	chr19:34882495-34882702(+)$1	1	23	26	8.9999
.))	chr7:26233101-26233345(-)$1	1	43	46	8.9999
(((	chr19:34881126-34881354(+)$1	1	20	23	8.9999
.((	chr19:34882902-34883118(+)$1	1	39	42	8.9999
...	chr17:78289332-78289613(+)$1	1	4	7	8.9999
..(	chr5:53340810-53341095(-)$1	1	118	121	8.9999
(((	chr9:94667149-94667408(-)$1	1	25	28	8.9999

#PSSM
G : 0.80	g : 0.19	
A : 0.80	a : 0.19	
G : 0.78	g : 0.21	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_CDS_m3_run1.nuc.txt

#NT
UUCC	chr1:90493004-90493326(+)$1	322	226	230	12.0000

#otherMatches

#Struct PSSM
Hddd	chr1:161088100-161088509(+)$1	409	26	30	12.0000
eeee	chr1:90493004-90493326(+)$1	322	226	230	12.0000

#DB
((((	chr1:161088100-161088509(+)$1	1	26	30	12.0000
))))	chr1:90493004-90493326(+)$1	1	226	230	12.0000

#PSSM
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	

#score	24.0
#seq	2
#width	4
#escape	false
#onStep	41
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_CDS_m3_run2.nuc.txt

#NT
CAG	chr4:174253145-174253368(-)$1	223	16	19	8.9999
Cag	chr9:100777547-100777800(+)$1	253	95	98	8.9999
CAG	chr21:46929208-46929437(-)$1	229	33	36	8.9999
CAG	chr20:35236175-35236421(+)$1	246	42	45	8.9999
CAG	chr16:4721228-4721519(+)$1	291	0	3	8.9999
CAG	chr4:174253129-174253345(-)$1	216	12	15	8.9999
Cag	chr9:100777600-100777819(+)$1	219	42	45	8.9999
CAG	chr4:68378008-68378268(-)$1	260	39	42	8.9999
CAG	chr10:1062954-1063264(+)$1	310	1	4	8.9999
CAG	chr1:16891198-16891504(-)$1	306	25	28	8.9999
cag	chr6:44218154-44218386(+)$1	232	4	7	8.9999
CAG	chrM:14181-14397(-)$1	216	117	120	8.9999
CAG	chr12:42707409-42707648(-)$1	239	129	132	8.9999
CAG	chr11:129991588-129991806(+)$1	218	16	19	8.9999
CAG	chr9:134353799-134354063(+)$1	264	58	61	8.9999
CAG	chr9:100774608-100774829(+)$1	221	22	25	8.9999
CAG	chr1:94341960-94342217(-)$1	257	29	32	8.9999
CAG	chr14:65236214-65236481(-)$1	267	32	35	8.9999
CAG	chr14:102551021-102551256(-)$1	235	151	154	8.9999
CAG	chr2:170667341-170667650(+)$1	309	238	241	8.9999
CAG	chrM:11987-12216(+)$1	229	175	178	8.9999
CAG	chr9:99699330-99699572(-)$1	242	5	8	8.9999
CAG	chr19:41938162-41938488(-)$1	326	172	175	8.9999
CAG	chr6:116911354-116911618(+)$1	264	99	102	8.9999
CAG	chr21:47612351-47612558(-)$1	207	11	14	8.9999
CAG	chr12:76448730-76448970(-)$1	240	18	21	8.9999
CAG	chr17:34151029-34151304(+)$1	275	108	111	8.9999
cAG	chr17:38244367-38244603(+)$1	236	6	9	8.9999
cag	chr21:47612478-47612718(-)$1	240	4	7	8.9999
CAG	chr1:67425296-67425527(+)$1	231	19	22	8.9999
CAG	chr21:47613464-47613668(-)$1	204	4	7	8.9999
CAG	chr6:159047624-159047872(+)$1	248	16	19	8.9999
CAG	chr9:139734853-139735099(+)$1	246	4	7	8.9999
CAG	chr6:30680768-30680979(-)$1	211	29	32	8.9999
CAG	chr1:12004456-12004700(+)$1	244	116	119	8.9999
CAG	chr14:65239510-65239747(-)$1	237	126	129	8.9999
CAG	chr21:47613498-47613706(-)$1	208	10	13	8.9999
CAG	chr19:11339932-11340203(-)$1	271	198	201	8.9999
CAG	chr1:150192892-150193157(-)$1	265	178	181	8.9999
cag	chr14:50255843-50256151(-)$1	308	9	12	8.9999
CAG	chr15:25615994-25616241(-)$1	247	123	126	8.9999
CAG	chr6:42627236-42627535(+)$1	299	154	157	8.9999
CAG	chr4:3231469-3231719(+)$1	250	28	31	8.9999
CAG	chr9:99700182-99700464(-)$1	282	88	91	8.9999
CAG	chr14:102551056-102551272(-)$1	216	167	170	8.9999
CAG	chr1:27105556-27105824(+)$1	268	48	51	8.9999
CAG	chr2:71360974-71361248(+)$1	274	1	4	8.9999
CAG	chr4:39324859-39325138(-)$1	279	30	33	8.9999
cag	chr21:47612962-47613173(-)$1	211	19	22	8.9999
CAG	chr20:48500499-48500748(+)$1	249	7	10	8.9999
CAG	chr14:35522513-35522766(+)$1	253	85	88	8.9999
CAG	chr14:65237507-65237785(-)$1	278	7	10	8.9999
cag	chr1:235377157-235377416(-)$1	259	116	119	8.9999
CAG	chr10:71151931-71152164(+)$1	233	11	14	8.9999
CAG	chrX:154005031-154005264(+)$1	233	44	47	8.9999
CAG	chr3:25654063-25654295(-)$1	232	20	23	8.9999
CAG	chr2:99977989-99978356(+)$1	367	54	57	8.9999
cag	chr21:47612911-47613147(-)$1	236	15	18	8.9999
CAG	chr12:80214502-80214760(-)$1	258	46	49	8.9999
CAG	chr12:42707575-42707810(-)$1	235	122	125	8.9999
CAG	chrX:53563473-53563728(-)$1	255	6	9	8.9999
CAG	chr10:105762566-105762846(+)$1	280	30	33	8.9999
CAG	chr19:49377468-49377722(+)$1	254	58	61	8.9999
CAG	chr9:99699516-99699752(-)$1	236	38	41	8.9999
CAG	chr10:91498211-91498472(+)$1	261	11	14	8.9999
CAG	chr21:46951351-46951628(-)$1	277	0	3	8.9999
CAG	chr7:106840558-106840814(+)$1	256	18	21	8.9999
CAG	chr11:17332638-17332898(+)$1	260	52	55	8.9999
CAG	chr22:41650211-41650572(-)$1	361	9	12	8.9999
CAG	chrX:135593971-135594255(+)$1	284	71	74	8.9999
CAG	chr19:10488978-10489217(-)$1	239	11	14	8.9999
CAG	chr7:106840502-106840758(+)$1	256	36	39	8.9999
CAG	chr17:38296684-38296934(+)$1	250	46	49	8.9999
CAG	chr18:55282834-55283054(-)$1	220	168	171	8.9999
CAG	chrX:135593908-135594171(+)$1	263	22	25	8.9999
CAG	chr13:31035425-31035661(-)$1	236	28	31	8.9999
CAG	chr14:65246430-65246666(-)$1	236	14	17	8.9999
CAG	chr1:154155362-154155570(-)$1	208	17	20	8.9999
CAG	chr1:193107133-193107389(+)$1	256	65	68	8.9999
CAG	chr4:73968001-73968278(-)$1	277	11	14	8.9999
CAG	chr12:76448698-76448930(-)$1	232	3	6	8.9999
CAG	chr9:100773523-100773771(+)$1	248	138	141	8.9999
CAG	chr9:100774629-100774848(+)$1	219	1	4	8.9999
CAG	chr21:46945766-46946019(-)$1	253	79	82	8.9999
CAG	chr14:65233292-65233506(-)$1	214	10	13	8.9999
cag	chr21:47612954-47613160(-)$1	206	6	9	8.9999
CAG	chr15:59205685-59205919(-)$1	234	142	145	8.9999
CAG	chr4:1018931-1019178(+)$1	247	2	5	8.9999
CAG	chr3:37367821-37368080(+)$1	259	23	26	8.9999
CAG	chr12:42706734-42707013(-)$1	279	10	13	8.9999
cag	chr21:47612973-47613188(-)$1	215	6	9	8.9999
cag	chr21:47612367-47612613(-)$1	246	4	7	8.9999
CAG	chr14:102551017-102551221(-)$1	204	116	119	8.9999
CAG	chr7:43540205-43540415(+)$1	210	23	26	8.9999
CAG	chr10:50534848-50535124(+)$1	276	33	36	8.9999

#otherMatches

#Struct PSSM
eee	chr19:10478991-10479329(-)$1	338	62	65	8.9999
GGG	chr4:174253145-174253368(-)$1	223	16	19	8.9999
ggg	chr9:100777547-100777800(+)$1	253	95	98	8.9999
cc:	chr21:46929208-46929437(-)$1	229	33	36	8.9999
eee	chr20:35236175-35236421(+)$1	246	42	45	8.9999
::e	chr16:4721228-4721519(+)$1	291	0	3	8.9999
mmm	chr4:174253129-174253345(-)$1	216	12	15	8.9999
ggg	chr9:100777600-100777819(+)$1	219	42	45	8.9999
CCC	chr4:68378008-68378268(-)$1	260	39	42	8.9999
DDD	chr10:1062954-1063264(+)$1	310	1	4	8.9999
gg[	chr1:16891198-16891504(-)$1	306	25	28	8.9999
EEE	chr6:44218154-44218386(+)$1	232	4	7	8.9999
eee	chrM:14181-14397(-)$1	216	117	120	8.9999
ccc	chr12:42707409-42707648(-)$1	239	129	132	8.9999
d[d	chr11:129991588-129991806(+)$1	218	16	19	8.9999
DDD	chr9:134353799-134354063(+)$1	264	58	61	8.9999
fff	chr9:100774608-100774829(+)$1	221	22	25	8.9999
!ff	chr1:94341960-94342217(-)$1	257	29	32	8.9999
lle	chr14:65236214-65236481(-)$1	267	32	35	8.9999
Edd	chr14:102551021-102551256(-)$1	235	151	154	8.9999
hhh	chr2:170667341-170667650(+)$1	309	238	241	8.9999
ggg	chrM:11987-12216(+)$1	229	175	178	8.9999
E:b	chr9:99699330-99699572(-)$1	242	5	8	8.9999
fff	chr19:41938162-41938488(-)$1	326	172	175	8.9999
ggg	chr6:116911354-116911618(+)$1	264	99	102	8.9999
d[e	chr21:47612351-47612558(-)$1	207	11	14	8.9999
NNF	chr12:76448730-76448970(-)$1	240	18	21	8.9999
:JJ	chr17:34151029-34151304(+)$1	275	108	111	8.9999
EEE	chr17:38244367-38244603(+)$1	236	6	9	8.9999
:::	chr21:47612478-47612718(-)$1	240	4	7	8.9999
!!g	chr1:67425296-67425527(+)$1	231	19	22	8.9999
hhh	chr21:47613464-47613668(-)$1	204	4	7	8.9999
PPP	chr6:159047624-159047872(+)$1	248	16	19	8.9999
HHH	chr9:139734853-139735099(+)$1	246	4	7	8.9999
d!!	chr6:30680768-30680979(-)$1	211	29	32	8.9999
fff	chr1:12004456-12004700(+)$1	244	116	119	8.9999
gg3	chr14:65239510-65239747(-)$1	237	126	129	8.9999
qqq	chr21:47613498-47613706(-)$1	208	10	13	8.9999
ddd	chr19:11339932-11340203(-)$1	271	198	201	8.9999
eee	chr1:150192892-150193157(-)$1	265	178	181	8.9999
ggg	chr14:50255843-50256151(-)$1	308	9	12	8.9999
ggg	chr15:25615994-25616241(-)$1	247	123	126	8.9999
ccG	chr6:42627236-42627535(+)$1	299	154	157	8.9999
DDD	chr4:3231469-3231719(+)$1	250	28	31	8.9999
ddd	chr9:99700182-99700464(-)$1	282	88	91	8.9999
Edd	chr14:102551056-102551272(-)$1	216	167	170	8.9999
ggg	chr1:27105556-27105824(+)$1	268	48	51	8.9999
:ee	chr2:71360974-71361248(+)$1	274	1	4	8.9999
vvv	chr4:39324859-39325138(-)$1	279	30	33	8.9999
:::	chr21:47612962-47613173(-)$1	211	19	22	8.9999
ddo	chr20:48500499-48500748(+)$1	249	7	10	8.9999
:dd	chr14:35522513-35522766(+)$1	253	85	88	8.9999
:::	chr14:65237507-65237785(-)$1	278	7	10	8.9999
^^^	chr1:235377157-235377416(-)$1	259	116	119	8.9999
DDD	chr10:71151931-71152164(+)$1	233	11	14	8.9999
''c	chrX:154005031-154005264(+)$1	233	44	47	8.9999
cc[	chr3:25654063-25654295(-)$1	232	20	23	8.9999
+++	chr2:99977989-99978356(+)$1	367	54	57	8.9999
DDN	chr21:47612911-47613147(-)$1	236	15	18	8.9999
'''	chr12:80214502-80214760(-)$1	258	46	49	8.9999
===	chr12:42707575-42707810(-)$1	235	122	125	8.9999
eee	chrX:53563473-53563728(-)$1	255	6	9	8.9999
bbp	chr10:105762566-105762846(+)$1	280	30	33	8.9999
ddd	chr19:49377468-49377722(+)$1	254	58	61	8.9999
ccc	chr9:99699516-99699752(-)$1	236	38	41	8.9999
E::	chr10:91498211-91498472(+)$1	261	11	14	8.9999
::f	chr21:46951351-46951628(-)$1	277	0	3	8.9999
c!!	chr7:106840558-106840814(+)$1	256	18	21	8.9999
ddd	chr11:17332638-17332898(+)$1	260	52	55	8.9999
EEE	chr22:41650211-41650572(-)$1	361	9	12	8.9999
d::	chrX:135593971-135594255(+)$1	284	71	74	8.9999
FFF	chr19:10488978-10489217(-)$1	239	11	14	8.9999
RRR	chr7:106840502-106840758(+)$1	256	36	39	8.9999
g:C	chr17:38296684-38296934(+)$1	250	46	49	8.9999
ddd	chr18:55282834-55283054(-)$1	220	168	171	8.9999
JJJ	chrX:135593908-135594171(+)$1	263	22	25	8.9999
eee	chr13:31035425-31035661(-)$1	236	28	31	8.9999
d!!	chr14:65246430-65246666(-)$1	236	14	17	8.9999
C::	chr1:154155362-154155570(-)$1	208	17	20	8.9999
b!!	chr1:193107133-193107389(+)$1	256	65	68	8.9999
iii	chr4:73968001-73968278(-)$1	277	11	14	8.9999
:CC	chr12:76448698-76448930(-)$1	232	3	6	8.9999
c::	chr9:100773523-100773771(+)$1	248	138	141	8.9999
ccw	chr9:100774629-100774848(+)$1	219	1	4	8.9999
ddd	chr21:46945766-46946019(-)$1	253	79	82	8.9999
I:c	chr14:65233292-65233506(-)$1	214	10	13	8.9999
mmm	chr21:47612954-47613160(-)$1	206	6	9	8.9999
vvv	chr15:59205685-59205919(-)$1	234	142	145	8.9999
:::	chr4:1018931-1019178(+)$1	247	2	5	8.9999
WWW	chr3:37367821-37368080(+)$1	259	23	26	8.9999
:::	chr12:42706734-42707013(-)$1	279	10	13	8.9999
HHH	chr21:47612973-47613188(-)$1	215	6	9	8.9999
GGG	chr21:47612367-47612613(-)$1	246	4	7	8.9999
Edd	chr14:102551017-102551221(-)$1	204	116	119	8.9999
ggg	chr7:43540205-43540415(+)$1	210	23	26	8.9999
ooo	chr10:50534848-50535124(+)$1	276	33	36	8.9999

#DB
)))	chr19:10478991-10479329(-)$1	1	62	65	8.9999
(((	chr4:174253145-174253368(-)$1	1	16	19	8.9999
)))	chr9:100777547-100777800(+)$1	1	95	98	8.9999
)).	chr21:46929208-46929437(-)$1	1	33	36	8.9999
)))	chr20:35236175-35236421(+)$1	1	42	45	8.9999
..(	chr16:4721228-4721519(+)$1	1	0	3	8.9999
...	chr4:174253129-174253345(-)$1	1	12	15	8.9999
)))	chr9:100777600-100777819(+)$1	1	42	45	8.9999
(((	chr4:68378008-68378268(-)$1	1	39	42	8.9999
(((	chr10:1062954-1063264(+)$1	1	1	4	8.9999
((.	chr1:16891198-16891504(-)$1	1	25	28	8.9999
(((	chr6:44218154-44218386(+)$1	1	4	7	8.9999
(((	chrM:14181-14397(-)$1	1	117	120	8.9999
)))	chr12:42707409-42707648(-)$1	1	129	132	8.9999
(.(	chr11:129991588-129991806(+)$1	1	16	19	8.9999
(((	chr9:134353799-134354063(+)$1	1	58	61	8.9999
(((	chr9:100774608-100774829(+)$1	1	22	25	8.9999
.((	chr1:94341960-94342217(-)$1	1	29	32	8.9999
..)	chr14:65236214-65236481(-)$1	1	32	35	8.9999
)((	chr14:102551021-102551256(-)$1	1	151	154	8.9999
(((	chr2:170667341-170667650(+)$1	1	238	241	8.9999
(((	chrM:11987-12216(+)$1	1	175	178	8.9999
(.(	chr9:99699330-99699572(-)$1	1	5	8	8.9999
)))	chr19:41938162-41938488(-)$1	1	172	175	8.9999
(((	chr6:116911354-116911618(+)$1	1	99	102	8.9999
(.(	chr21:47612351-47612558(-)$1	1	11	14	8.9999
..(	chr12:76448730-76448970(-)$1	1	18	21	8.9999
.((	chr17:34151029-34151304(+)$1	1	108	111	8.9999
(((	chr17:38244367-38244603(+)$1	1	6	9	8.9999
...	chr21:47612478-47612718(-)$1	1	4	7	8.9999
..(	chr1:67425296-67425527(+)$1	1	19	22	8.9999
(((	chr21:47613464-47613668(-)$1	1	4	7	8.9999
...	chr6:159047624-159047872(+)$1	1	16	19	8.9999
(((	chr9:139734853-139735099(+)$1	1	4	7	8.9999
(..	chr6:30680768-30680979(-)$1	1	29	32	8.9999
(((	chr1:12004456-12004700(+)$1	1	116	119	8.9999
)).	chr14:65239510-65239747(-)$1	1	126	129	8.9999
...	chr21:47613498-47613706(-)$1	1	10	13	8.9999
(((	chr19:11339932-11340203(-)$1	1	198	201	8.9999
(((	chr1:150192892-150193157(-)$1	1	178	181	8.9999
(((	chr14:50255843-50256151(-)$1	1	9	12	8.9999
(((	chr15:25615994-25616241(-)$1	1	123	126	8.9999
))(	chr6:42627236-42627535(+)$1	1	154	157	8.9999
(((	chr4:3231469-3231719(+)$1	1	28	31	8.9999
)))	chr9:99700182-99700464(-)$1	1	88	91	8.9999
)((	chr14:102551056-102551272(-)$1	1	167	170	8.9999
(((	chr1:27105556-27105824(+)$1	1	48	51	8.9999
.((	chr2:71360974-71361248(+)$1	1	1	4	8.9999
...	chr4:39324859-39325138(-)$1	1	30	33	8.9999
...	chr21:47612962-47613173(-)$1	1	19	22	8.9999
((.	chr20:48500499-48500748(+)$1	1	7	10	8.9999
.((	chr14:35522513-35522766(+)$1	1	85	88	8.9999
...	chr14:65237507-65237785(-)$1	1	7	10	8.9999
...	chr1:235377157-235377416(-)$1	1	116	119	8.9999
(((	chr10:71151931-71152164(+)$1	1	11	14	8.9999
..(	chrX:154005031-154005264(+)$1	1	44	47	8.9999
((.	chr3:25654063-25654295(-)$1	1	20	23	8.9999
...	chr2:99977989-99978356(+)$1	1	54	57	8.9999
((.	chr21:47612911-47613147(-)$1	1	15	18	8.9999
...	chr12:80214502-80214760(-)$1	1	46	49	8.9999
(((	chr12:42707575-42707810(-)$1	1	122	125	8.9999
(((	chrX:53563473-53563728(-)$1	1	6	9	8.9999
((.	chr10:105762566-105762846(+)$1	1	30	33	8.9999
)))	chr19:49377468-49377722(+)$1	1	58	61	8.9999
)))	chr9:99699516-99699752(-)$1	1	38	41	8.9999
(..	chr10:91498211-91498472(+)$1	1	11	14	8.9999
..(	chr21:46951351-46951628(-)$1	1	0	3	8.9999
(..	chr7:106840558-106840814(+)$1	1	18	21	8.9999
)))	chr11:17332638-17332898(+)$1	1	52	55	8.9999
(((	chr22:41650211-41650572(-)$1	1	9	12	8.9999
)..	chrX:135593971-135594255(+)$1	1	71	74	8.9999
(((	chr19:10488978-10489217(-)$1	1	11	14	8.9999
...	chr7:106840502-106840758(+)$1	1	36	39	8.9999
).(	chr17:38296684-38296934(+)$1	1	46	49	8.9999
)))	chr18:55282834-55283054(-)$1	1	168	171	8.9999
(((	chrX:135593908-135594171(+)$1	1	22	25	8.9999
(((	chr13:31035425-31035661(-)$1	1	28	31	8.9999
(..	chr14:65246430-65246666(-)$1	1	14	17	8.9999
(..	chr1:154155362-154155570(-)$1	1	17	20	8.9999
(..	chr1:193107133-193107389(+)$1	1	65	68	8.9999
(((	chr4:73968001-73968278(-)$1	1	11	14	8.9999
.((	chr12:76448698-76448930(-)$1	1	3	6	8.9999
)..	chr9:100773523-100773771(+)$1	1	138	141	8.9999
((.	chr9:100774629-100774848(+)$1	1	1	4	8.9999
(((	chr21:46945766-46946019(-)$1	1	79	82	8.9999
(.(	chr14:65233292-65233506(-)$1	1	10	13	8.9999
...	chr21:47612954-47613160(-)$1	1	6	9	8.9999
...	chr15:59205685-59205919(-)$1	1	142	145	8.9999
...	chr4:1018931-1019178(+)$1	1	2	5	8.9999
...	chr3:37367821-37368080(+)$1	1	23	26	8.9999
...	chr12:42706734-42707013(-)$1	1	10	13	8.9999
(((	chr21:47612973-47613188(-)$1	1	6	9	8.9999
(((	chr21:47612367-47612613(-)$1	1	4	7	8.9999
)((	chr14:102551017-102551221(-)$1	1	116	119	8.9999
(((	chr7:43540205-43540415(+)$1	1	23	26	8.9999
...	chr10:50534848-50535124(+)$1	1	33	36	8.9999

#PSSM
C : 0.89	c : 0.10	
A : 0.88	a : 0.11	
G : 0.88	g : 0.11	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_CDS_m3_run1.nuc.txt

#NT
CCCUUCCA	chr3:47452180-47452464(+)$1	284	31	39	16.2321
cccugccc	chr11:65422194-65422476(-)$1	282	147	155	17.8392
CCCUUCCU	chr12:49444440-49444649(-)$1	209	79	87	16.3214
CCCUACCC	chr11:60899183-60899490(-)$1	307	58	66	17.1250
CCCUGCCC	chr11:64897372-64897637(-)$1	265	102	110	17.8392
CCCUUCCC	chr19:48197239-48197567(+)$1	328	245	253	20.0714
CCCUACCC	chr9:116930860-116931117(+)$1	257	173	181	17.1250
cccugccc	chr1:16262372-16262659(+)$1	287	100	108	17.8392
CCCUGCCC	chr17:7750913-7751186(+)$1	273	231	239	17.8392
CCCUUCCU	chr12:122617970-122618256(+)$1	286	110	118	16.3214
CCCUUCCC	chr7:73011845-73012080(-)$1	235	205	213	20.0714
cacuuccc	chr17:7416641-7417010(+)$1	369	2	10	16.1428
CCCUUCCC	chr19:50183285-50183567(+)$1	282	120	128	20.0714
CCCUUCCC	chr2:242694494-242694853(+)$1	359	286	294	20.0714
CCCUUCCA	chr16:22545756-22545989(+)$1	233	109	117	16.2321
cacuuccc	chr17:7417305-7417546(+)$1	241	31	39	16.1428
CCCUUCCA	chrM:13679-13897(+)$1	218	86	94	16.2321
ACCUUCCC	chr1:10166206-10166559(+)$1	353	123	131	15.6071
CCCUACCC	chr6:43472749-43473011(+)$1	262	112	120	17.1250
CCCUGCCC	chr11:117152704-117152983(+)$1	279	39	47	17.8392
CCCUGCCC	chr14:73743534-73743901(-)$1	367	177	185	17.8392
CCCUUCCA	chr16:21416087-21416344(-)$1	257	19	27	16.2321
CACUUCCC	chr20:30155926-30156206(+)$1	280	0	8	16.1428
CCCUUCCU	chr12:57919670-57919924(+)$1	254	29	37	16.3214
CCCUUCCC	chr12:6442233-6442521(-)$1	288	40	48	20.0714
UCCUUCCC	chr17:78222369-78222672(+)$1	303	49	57	15.8750
CCCAUCCC	chr9:139849067-139849311(+)$1	244	71	79	15.7857
CCCAUCCC	chr17:19285404-19285750(+)$1	346	153	161	15.7857
CCCUUCCU	chr17:65105487-65105751(-)$1	264	64	72	16.3214
CCCUUCCC	chr12:57919974-57920248(+)$1	274	42	50	20.0714
cccugccc	chr17:2298354-2298639(-)$1	285	63	71	17.8392
CCCUUCCC	chr6:33166964-33167295(-)$1	331	135	143	20.0714
CACUUCCC	chr17:4883618-4883928(-)$1	310	144	152	16.1428
CCCUGCCC	chr17:36891487-36891832(-)$1	345	145	153	17.8392
cucuuccc	chr1:171526774-171527025(+)$1	251	122	130	16.1428
cccugccc	chr19:10369853-10370134(+)$1	281	133	141	17.8392
cccugccc	chr19:10369763-10370039(+)$1	276	223	231	17.8392
CCCUUCCC	chr20:401387-401638(+)$1	251	55	63	20.0714
CCCUUCCU	chr11:61048316-61048669(-)$1	353	275	283	16.3214
CCCUGCCC	chr20:33330311-33330617(-)$1	306	120	128	17.8392
CUCUUCCC	chr1:33236457-33236724(+)$1	267	203	211	16.1428
cccauccc	chr5:137803535-137803792(+)$1	257	0	8	15.7857
CUCUUCCC	chr1:33236582-33236840(+)$1	258	78	86	16.1428
cccuuccc	chr12:7045556-7045813(+)$1	257	65	73	20.0714
CCCUACCC	chr8:145065345-145065586(+)$1	241	151	159	17.1250
CCCUACCC	chr8:145065386-145065622(+)$1	236	110	118	17.1250
UCCUUCCC	chr3:48461329-48461566(-)$1	237	58	66	15.8750
CCCUUCCC	chr12:49443974-49444215(-)$1	241	126	134	20.0714
CCCUGCCC	chr17:36891428-36891687(-)$1	259	0	8	17.8392
CCCUUCCC	chr6:33166922-33167164(-)$1	242	4	12	20.0714
CUCUUCCC	chr19:54969639-54969899(+)$1	260	92	100	16.1428
CCCUGCCC	chr12:49434025-49434348(-)$1	323	285	293	17.8392
CCCAUCCC	chr3:47451882-47452173(+)$1	291	73	81	15.7857
CCCUUCCC	chr3:184090230-184090538(-)$1	308	282	290	20.0714
UCCUUCCC	chr16:72828922-72829212(-)$1	290	131	139	15.8750

#otherMatches

#Struct PSSM
eeeeennn	chr12:57110751-57111003(-)$1	252	105	113	15.8750
::::::::	chr3:47452180-47452464(+)$1	284	31	39	16.2321
c:FFFFFF	chr11:65422194-65422476(-)$1	282	147	155	17.8392
::::::::	chr12:49444440-49444649(-)$1	209	79	87	16.3214
ee::::::	chr11:60899183-60899490(-)$1	307	58	66	17.1250
dd]ccc::	chr11:64897372-64897637(-)$1	265	102	110	17.8392
JJJJJJJ}	chr19:48197239-48197567(+)$1	328	245	253	20.0714
:::::::d	chr9:116930860-116931117(+)$1	257	173	181	17.1250
d55555hh	chr1:16262372-16262659(+)$1	287	100	108	17.8392
B:::::dd	chr17:7750913-7751186(+)$1	273	231	239	17.8392
iiii::::	chr12:122617970-122618256(+)$1	286	110	118	16.3214
@@@@@@@@	chr7:73011845-73012080(-)$1	235	205	213	20.0714
::::::::	chr17:7416641-7417010(+)$1	369	2	10	16.1428
ddddbb[c	chr19:50183285-50183567(+)$1	282	120	128	20.0714
::::::::	chr2:242694494-242694853(+)$1	359	286	294	20.0714
::::::::	chr16:22545756-22545989(+)$1	233	109	117	16.2321
Dddddnnn	chr17:7417305-7417546(+)$1	241	31	39	16.1428
77eeeee:	chrM:13679-13897(+)$1	218	86	94	16.2321
dd::::::	chr1:10166206-10166559(+)$1	353	123	131	15.6071
^^^^^^^^	chr6:43472749-43473011(+)$1	262	112	120	17.1250
::::bb!!	chr11:117152704-117152983(+)$1	279	39	47	17.8392
::::cccc	chr14:73743534-73743901(-)$1	367	177	185	17.8392
::::::::	chr16:21416087-21416344(-)$1	257	19	27	16.2321
:::::::b	chr20:30155926-30156206(+)$1	280	0	8	16.1428
:dddd!!e	chr12:57919670-57919924(+)$1	254	29	37	16.3214
f:::::::	chr12:6442233-6442521(-)$1	288	40	48	20.0714
ggggggga	chr17:78222369-78222672(+)$1	303	49	57	15.8750
++++ccc!	chr9:139849067-139849311(+)$1	244	71	79	15.7857
ee>>>>>>	chr17:19285404-19285750(+)$1	346	153	161	15.7857
::::::EE	chr17:65105487-65105751(-)$1	264	64	72	16.3214
FOOOOOOD	chr12:57919974-57920248(+)$1	274	42	50	20.0714
^^^^^^^^	chr17:2298354-2298639(-)$1	285	63	71	17.8392
::::::ff	chr6:33166964-33167295(-)$1	331	135	143	20.0714
@@@@@@@H	chr17:4883618-4883928(-)$1	310	144	152	16.1428
ffffff::	chr17:36891487-36891832(-)$1	345	145	153	17.8392
ssssssss	chr1:171526774-171527025(+)$1	251	122	130	16.1428
:dddd!!g	chr19:10369853-10370134(+)$1	281	133	141	17.8392
:dddd!!g	chr19:10369763-10370039(+)$1	276	223	231	17.8392
::::::::	chr20:401387-401638(+)$1	251	55	63	20.0714
mmdddd]e	chr11:61048316-61048669(-)$1	353	275	283	16.3214
::DDDD::	chr20:33330311-33330617(-)$1	306	120	128	17.8392
++++++++	chr1:33236457-33236724(+)$1	267	203	211	16.1428
::::::::	chr5:137803535-137803792(+)$1	257	0	8	15.7857
++++++++	chr1:33236582-33236840(+)$1	258	78	86	16.1428
::::::::	chr12:7045556-7045813(+)$1	257	65	73	20.0714
E:::::::	chr8:145065345-145065586(+)$1	241	151	159	17.1250
9999999=	chr8:145065386-145065622(+)$1	236	110	118	17.1250
cqqqqqqq	chr3:48461329-48461566(-)$1	237	58	66	15.8750
CCGGGGGG	chr12:49443974-49444215(-)$1	241	126	134	20.0714
::DDDD{C	chr17:36891428-36891687(-)$1	259	0	8	17.8392
::::::::	chr6:33166922-33167164(-)$1	242	4	12	20.0714
^^^^^^^^	chr19:54969639-54969899(+)$1	260	92	100	16.1428
fffffmmm	chr12:49434025-49434348(-)$1	323	285	293	17.8392
''''''''	chr3:47451882-47452173(+)$1	291	73	81	15.7857
@@@@@@@@	chr3:184090230-184090538(-)$1	308	282	290	20.0714
wwwwwwww	chr16:72828922-72829212(-)$1	290	131	139	15.8750

#DB
(((((...	chr12:57110751-57111003(-)$1	1	105	113	15.8750
........	chr3:47452180-47452464(+)$1	1	31	39	16.2321
).))))))	chr11:65422194-65422476(-)$1	1	147	155	17.8392
........	chr12:49444440-49444649(-)$1	1	79	87	16.3214
))......	chr11:60899183-60899490(-)$1	1	58	66	17.1250
)).)))..	chr11:64897372-64897637(-)$1	1	102	110	17.8392
))))))).	chr19:48197239-48197567(+)$1	1	245	253	20.0714
.......(	chr9:116930860-116931117(+)$1	1	173	181	17.1250
).....))	chr1:16262372-16262659(+)$1	1	100	108	17.8392
).....((	chr17:7750913-7751186(+)$1	1	231	239	17.8392
))))....	chr12:122617970-122618256(+)$1	1	110	118	16.3214
........	chr7:73011845-73012080(-)$1	1	205	213	20.0714
........	chr17:7416641-7417010(+)$1	1	2	10	16.1428
((((((.(	chr19:50183285-50183567(+)$1	1	120	128	20.0714
........	chr2:242694494-242694853(+)$1	1	286	294	20.0714
........	chr16:22545756-22545989(+)$1	1	109	117	16.2321
(((((...	chr17:7417305-7417546(+)$1	1	31	39	16.1428
..))))).	chrM:13679-13897(+)$1	1	86	94	16.2321
))......	chr1:10166206-10166559(+)$1	1	123	131	15.6071
........	chr6:43472749-43473011(+)$1	1	112	120	17.1250
....((..	chr11:117152704-117152983(+)$1	1	39	47	17.8392
....((((	chr14:73743534-73743901(-)$1	1	177	185	17.8392
........	chr16:21416087-21416344(-)$1	1	19	27	16.2321
.......(	chr20:30155926-30156206(+)$1	1	0	8	16.1428
.((((..(	chr12:57919670-57919924(+)$1	1	29	37	16.3214
).......	chr12:6442233-6442521(-)$1	1	40	48	20.0714
((((((((	chr17:78222369-78222672(+)$1	1	49	57	15.8750
....(((.	chr9:139849067-139849311(+)$1	1	71	79	15.7857
))......	chr17:19285404-19285750(+)$1	1	153	161	15.7857
......((	chr17:65105487-65105751(-)$1	1	64	72	16.3214
(......(	chr12:57919974-57920248(+)$1	1	42	50	20.0714
........	chr17:2298354-2298639(-)$1	1	63	71	17.8392
......((	chr6:33166964-33167295(-)$1	1	135	143	20.0714
.......)	chr17:4883618-4883928(-)$1	1	144	152	16.1428
))))))..	chr17:36891487-36891832(-)$1	1	145	153	17.8392
........	chr1:171526774-171527025(+)$1	1	122	130	16.1428
.((((..(	chr19:10369853-10370134(+)$1	1	133	141	17.8392
.((((..(	chr19:10369763-10370039(+)$1	1	223	231	17.8392
........	chr20:401387-401638(+)$1	1	55	63	20.0714
..)))).)	chr11:61048316-61048669(-)$1	1	275	283	16.3214
..((((..	chr20:33330311-33330617(-)$1	1	120	128	17.8392
........	chr1:33236457-33236724(+)$1	1	203	211	16.1428
........	chr5:137803535-137803792(+)$1	1	0	8	15.7857
........	chr1:33236582-33236840(+)$1	1	78	86	16.1428
........	chr12:7045556-7045813(+)$1	1	65	73	20.0714
).......	chr8:145065345-145065586(+)$1	1	151	159	17.1250
.......)	chr8:145065386-145065622(+)$1	1	110	118	17.1250
(.......	chr3:48461329-48461566(-)$1	1	58	66	15.8750
((((((((	chr12:49443974-49444215(-)$1	1	126	134	20.0714
..((((.(	chr17:36891428-36891687(-)$1	1	0	8	17.8392
........	chr6:33166922-33167164(-)$1	1	4	12	20.0714
........	chr19:54969639-54969899(+)$1	1	92	100	16.1428
(((((...	chr12:49434025-49434348(-)$1	1	285	293	17.8392
........	chr3:47451882-47452173(+)$1	1	73	81	15.7857
........	chr3:184090230-184090538(-)$1	1	282	290	20.0714
........	chr16:72828922-72829212(-)$1	1	131	139	15.8750

#PSSM
C : 0.73	c : 0.17	U : 0.07	A : 0.01	
C : 0.73	c : 0.12	U : 0.05	a : 0.03	A : 0.03	u : 0.01	
C : 0.82	c : 0.17	
U : 0.76	u : 0.16	A : 0.05	a : 0.01	
U : 0.58	G : 0.14	g : 0.08	A : 0.08	u : 0.08	
C : 0.82	c : 0.17	
C : 0.82	c : 0.17	
C : 0.66	c : 0.17	U : 0.08	A : 0.07	

#score	976.3214285714287
#seq	56
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_transcript_m1_run1.nuc.txt

#NT
GGGCUUGG	chr22:47520558-47520796(+)$1	238	13	21	15.4788
AGGCUGGG	chr12:125026671-125026902(-)$1	231	37	45	16.0422
GGGGUGGG	chr10:134428891-134429155(+)$1	264	179	187	16.2535
GGGCUGAG	chr16:90074902-90075156(-)$1	254	6	14	15.4788
gggcgggg	chr20:35169775-35170078(-)$1	303	188	196	16.6760
GGGCUCGG	chr4:146857721-146857962(-)$1	241	66	74	15.4788
GGGCUGGC	chr22:47530600-47530840(+)$1	240	22	30	15.8309
AGGCUGGG	chr1:2200714-2200964(+)$1	250	231	239	16.0422
GGGUUGGG	chr8:141608529-141608843(-)$1	314	21	29	16.0422
UGGCUGGG	chr2:242704384-242704664(+)$1	280	97	105	15.6901
GGGCUGGC	chr19:56631837-56632095(-)$1	258	27	35	15.8309
GGGCUGGU	chr12:124876881-124877133(-)$1	252	205	213	15.6901
GGGCUGGC	chr1:155532273-155532635(-)$1	362	158	166	15.8309
GGGCGGGG	chrX:149108116-149108358(+)$1	242	154	162	16.6760
gggcgggg	chr20:4129753-4130022(+)$1	269	30	38	16.6760
CGGCUGGG	chr21:46928948-46929204(+)$1	256	85	93	15.6901
GGGCGGGG	chr21:46644303-46644578(+)$1	275	146	154	16.6760
GGGCUGGG	chr22:24988394-24988676(-)$1	282	59	67	20.0563
GGGCUGGG	chr22:45133630-45133903(+)$1	273	120	128	20.0563
GGCCUGGG	chr7:2680539-2680783(+)$1	244	54	62	15.4084
GGGCCGGG	chr5:175298707-175299021(+)$1	314	16	24	16.3239
gggcuugg	chr3:52001554-52001799(-)$1	245	0	8	15.4788
GGGCUGGG	chr19:54692976-54693281(-)$1	305	49	57	20.0563
GGGAUGGG	chr17:79394199-79394443(+)$1	244	116	124	15.9718
AGGCUGGG	chr11:638595-638839(+)$1	244	121	129	16.0422
GUGCUGGG	chr4:1237030-1237283(-)$1	253	8	16	15.4788
GGGCUGGG	chr8:144454572-144454844(+)$1	272	119	127	20.0563
AGGCUGGG	chr9:137225483-137225725(+)$1	242	38	46	16.0422
GCGCUGGG	chr21:47565937-47566164(-)$1	227	49	57	15.4084
GGGCUGGG	chr20:25529146-25529467(-)$1	321	135	143	20.0563
GGGCUGUG	chr14:100047665-100047919(-)$1	254	209	217	15.5492
GGGCUGUG	chr17:75367574-75367833(+)$1	259	50	58	15.5492
GGGCUGGG	chr9:138973206-138973457(-)$1	251	231	239	20.0563
GGGCUGGC	chr4:1796324-1796596(+)$1	272	58	66	15.8309
GGGCUGGG	chr19:927510-927767(+)$1	257	216	224	20.0563
GAGCUGGG	chr19:5897283-5897571(-)$1	288	117	125	15.4084
GGGCUGGG	chr11:32915265-32915552(+)$1	287	116	124	20.0563
GGGGUGGG	chr17:2608207-2608450(-)$1	243	103	111	16.2535
gggcgggg	chr17:80188929-80189158(+)$1	229	94	102	16.6760
GGGGUGGG	chr8:17529265-17529514(-)$1	249	194	202	16.2535
gggcgggg	chr11:504267-504517(-)$1	250	117	125	16.6760
GGGCUGGG	chr17:77998957-77999226(-)$1	269	51	59	20.0563
GGGCUGGG	chr1:2042190-2042498(+)$1	308	20	28	20.0563
gggccggg	chr1:21978122-21978373(-)$1	251	29	37	16.3239
GGACUGGG	chr6:111136394-111136705(-)$1	311	112	120	15.3380
GGGCUGGG	chr19:35762784-35763061(+)$1	277	25	33	20.0563
GGGCUGCG	chr20:4129684-4129943(+)$1	259	2	10	15.5492
GGGGUGGG	chr2:242510488-242510825(+)$1	337	20	28	16.2535
GGGAUGGG	chr7:2146288-2146526(-)$1	238	226	234	15.9718
GGGCUGGU	chr19:10223607-10223931(+)$1	324	78	86	15.6901
GGGCUGGG	chr19:1947605-1947852(+)$1	247	98	106	20.0563
AGGCUGGG	chr19:40324302-40324579(-)$1	277	120	128	16.0422
GGGCUGGG	chr11:891560-891813(-)$1	253	105	113	20.0563
GUGCUGGG	chr11:1582294-1582574(-)$1	280	180	188	15.4788
gggcgggg	chr4:6785318-6785584(+)$1	266	18	26	16.6760
GGGUUGGG	chr19:39653553-39653824(+)$1	271	56	64	16.0422
GGGGUGGG	chr9:136848109-136848350(-)$1	241	20	28	16.2535
AGGCUGGG	chr11:70450385-70450621(-)$1	236	182	190	16.0422
GGGCGGGG	chr22:31672385-31672663(+)$1	278	114	122	16.6760
GGGUUGGG	chr18:77677548-77677793(-)$1	245	99	107	16.0422
GGGGUGGG	chr20:43567858-43568075(+)$1	217	166	174	16.2535
GGGCAGGG	chr1:2225591-2225821(+)$1	230	119	127	16.1126
GGGCCGGG	chr19:15442277-15442572(-)$1	295	11	19	16.3239
GGGCGGGG	chr9:138914090-138914400(-)$1	310	129	137	16.6760
GGGCCGGG	chr16:53165390-53165656(+)$1	266	116	124	16.3239
GGGCUGGG	chr16:428944-429186(-)$1	242	213	221	20.0563
GGGCUCGG	chr19:18632465-18632727(-)$1	262	77	85	15.4788
GGGCUGCG	chr19:41771152-41771414(+)$1	262	21	29	15.5492
GGGCUGGA	chr20:60910243-60910513(-)$1	270	128	136	15.6197
gggcuggg	chr17:1394074-1394373(-)$1	299	172	180	20.0563

#otherMatches

#Struct PSSM
mccc====	chr16:75282814-75283053(-)$1	239	28	36	15.4084
:a[dddd[	chr22:47520558-47520796(+)$1	238	13	21	15.4788
bbGGGGGG	chr12:125026671-125026902(-)$1	231	37	45	16.0422
========	chr10:134428891-134429155(+)$1	264	179	187	16.2535
##ccc[a[	chr16:90074902-90075156(-)$1	254	6	14	15.4788
EEE}DDDD	chr20:35169775-35170078(-)$1	303	188	196	16.6760
KIIIIIII	chr4:146857721-146857962(-)$1	241	66	74	15.4788
bbbb[bbp	chr22:47530600-47530840(+)$1	240	22	30	15.8309
qdddd:::	chr1:2200714-2200964(+)$1	250	231	239	16.0422
:::fffff	chr8:141608529-141608843(-)$1	314	21	29	16.0422
cc"""iii	chr2:242704384-242704664(+)$1	280	97	105	15.6901
eeeeeedd	chr19:56631837-56632095(-)$1	258	27	35	15.8309
Gffffffq	chr12:124876881-124877133(-)$1	252	205	213	15.6901
a]cccIII	chr1:155532273-155532635(-)$1	362	158	166	15.8309
d]bb333g	chrX:149108116-149108358(+)$1	242	154	162	16.6760
eeeee[a!	chr20:4129753-4130022(+)$1	269	30	38	16.6760
::hhhhhh	chr21:46928948-46929204(+)$1	256	85	93	15.6901
[eeeeenn	chr21:46644303-46644578(+)$1	275	146	154	16.6760
qqqfffff	chr22:24988394-24988676(-)$1	282	59	67	20.0563
iiiiiiii	chr22:45133630-45133903(+)$1	273	120	128	20.0563
DDD{DDDD	chr7:2680539-2680783(+)$1	244	54	62	15.4084
fffff!!d	chr5:175298707-175299021(+)$1	314	16	24	16.3239
:=======	chr3:52001554-52001799(-)$1	245	0	8	15.4788
:ggggggg	chr19:54692976-54693281(-)$1	305	49	57	20.0563
DDDDYYJJ	chr17:79394199-79394443(+)$1	244	116	124	15.9718
ellleeee	chr11:638595-638839(+)$1	244	121	129	16.0422
C{DDDD{F	chr4:1237030-1237283(-)$1	253	8	16	15.4788
dddd:eee	chr8:144454572-144454844(+)$1	272	119	127	20.0563
33======	chr9:137225483-137225725(+)$1	242	38	46	16.0422
ddgggggg	chr21:47565937-47566164(-)$1	227	49	57	15.4084
hhhhhhh]	chr20:25529146-25529467(-)$1	321	135	143	20.0563
fffooooo	chr14:100047665-100047919(-)$1	254	209	217	15.5492
bppppppp	chr17:75367574-75367833(+)$1	259	50	58	15.5492
ccFFFFFF	chr9:138973206-138973457(-)$1	251	231	239	20.0563
eeeee]bb	chr4:1796324-1796596(+)$1	272	58	66	15.8309
gggggddd	chr19:927510-927767(+)$1	257	216	224	20.0563
b22ggggg	chr19:5897283-5897571(-)$1	288	117	125	15.4084
nnnggggg	chr11:32915265-32915552(+)$1	287	116	124	20.0563
####dddd	chr17:2608207-2608450(-)$1	243	103	111	16.2535
ggggdddd	chr17:80188929-80189158(+)$1	229	94	102	16.6760
ffff]ddd	chr8:17529265-17529514(-)$1	249	194	202	16.2535
========	chr11:504267-504517(-)$1	250	117	125	16.6760
fffff!!f	chr17:77998957-77999226(-)$1	269	51	59	20.0563
DDD{IIII	chr1:2042190-2042498(+)$1	308	20	28	20.0563
bbdddd[d	chr1:21978122-21978373(-)$1	251	29	37	16.3239
###bb[bb	chr6:111136394-111136705(-)$1	311	112	120	15.3380
ff[dddd!	chr19:35762784-35763061(+)$1	277	25	33	20.0563
::::A{EE	chr20:4129684-4129943(+)$1	259	2	10	15.5492
ddd[gggg	chr2:242510488-242510825(+)$1	337	20	28	16.2535
=====FFF	chr7:2146288-2146526(-)$1	238	226	234	15.9718
ggggg]dd	chr19:10223607-10223931(+)$1	324	78	86	15.6901
]ggggggg	chr19:1947605-1947852(+)$1	247	98	106	20.0563
[ccc[eee	chr19:40324302-40324579(-)$1	277	120	128	16.0422
ldddd22c	chr11:891560-891813(-)$1	253	105	113	20.0563
eeeee:ff	chr11:1582294-1582574(-)$1	280	180	188	15.4788
[a[aa[bb	chr4:6785318-6785584(+)$1	266	18	26	16.6760
EEHHHHHH	chr19:39653553-39653824(+)$1	271	56	64	16.0422
CCC{FFFF	chr9:136848109-136848350(-)$1	241	20	28	16.2535
FFFEEEEE	chr11:70450385-70450621(-)$1	236	182	190	16.0422
dddd!!cc	chr22:31672385-31672663(+)$1	278	114	122	16.6760
{GGGGGGG	chr18:77677548-77677793(-)$1	245	99	107	16.0422
||||JJJJ	chr20:43567858-43568075(+)$1	217	166	174	16.2535
feeeee%%	chr1:2225591-2225821(+)$1	230	119	127	16.1126
FFFFFFFF	chr19:15442277-15442572(-)$1	295	11	19	16.3239
dccc]ccc	chr9:138914090-138914400(-)$1	310	129	137	16.6760
ICCCGGGG	chr16:53165390-53165656(+)$1	266	116	124	16.3239
DDDD////	chr16:428944-429186(-)$1	242	213	221	20.0563
JJJJJJJJ	chr19:18632465-18632727(-)$1	262	77	85	15.4788
[ccc[ccc	chr19:41771152-41771414(+)$1	262	21	29	15.5492
eeee[ddd	chr20:60910243-60910513(-)$1	270	128	136	15.6197
ggggg!!b	chr17:1394074-1394373(-)$1	299	172	180	20.0563

#DB
.)))((((	chr16:75282814-75283053(-)$1	1	28	36	15.4084
.(.((((.	chr22:47520558-47520796(+)$1	1	13	21	15.4788
))((((((	chr12:125026671-125026902(-)$1	1	37	45	16.0422
((((((((	chr10:134428891-134429155(+)$1	1	179	187	16.2535
..(((.(.	chr16:90074902-90075156(-)$1	1	6	14	15.4788
))).))))	chr20:35169775-35170078(-)$1	1	188	196	16.6760
.(((((((	chr4:146857721-146857962(-)$1	1	66	74	15.4788
((((.((.	chr22:47530600-47530840(+)$1	1	22	30	15.8309
.))))...	chr1:2200714-2200964(+)$1	1	231	239	16.0422
...(((((	chr8:141608529-141608843(-)$1	1	21	29	16.0422
((...(((	chr2:242704384-242704664(+)$1	1	97	105	15.6901
((((((((	chr19:56631837-56632095(-)$1	1	27	35	15.8309
)((((((.	chr12:124876881-124877133(-)$1	1	205	213	15.6901
).))))))	chr1:155532273-155532635(-)$1	1	158	166	15.8309
).))...)	chrX:149108116-149108358(+)$1	1	154	162	16.6760
(((((.(.	chr20:4129753-4130022(+)$1	1	30	38	16.6760
..((((((	chr21:46928948-46929204(+)$1	1	85	93	15.6901
.(((((..	chr21:46644303-46644578(+)$1	1	146	154	16.6760
...)))))	chr22:24988394-24988676(-)$1	1	59	67	20.0563
((((((((	chr22:45133630-45133903(+)$1	1	120	128	20.0563
(((.((((	chr7:2680539-2680783(+)$1	1	54	62	15.4084
(((((..(	chr5:175298707-175299021(+)$1	1	16	24	16.3239
.(((((((	chr3:52001554-52001799(-)$1	1	0	8	15.4788
.(((((((	chr19:54692976-54693281(-)$1	1	49	57	20.0563
))))..))	chr17:79394199-79394443(+)$1	1	116	124	15.9718
(...))))	chr11:638595-638839(+)$1	1	121	129	16.0422
(.((((.(	chr4:1237030-1237283(-)$1	1	8	16	15.4788
)))).(((	chr8:144454572-144454844(+)$1	1	119	127	20.0563
..))))))	chr9:137225483-137225725(+)$1	1	38	46	16.0422
))((((((	chr21:47565937-47566164(-)$1	1	49	57	15.4084
))))))).	chr20:25529146-25529467(-)$1	1	135	143	20.0563
(((.....	chr14:100047665-100047919(-)$1	1	209	217	15.5492
(.......	chr17:75367574-75367833(+)$1	1	50	58	15.5492
))))))))	chr9:138973206-138973457(-)$1	1	231	239	20.0563
))))).))	chr4:1796324-1796596(+)$1	1	58	66	15.8309
((((((((	chr19:927510-927767(+)$1	1	216	224	20.0563
)..)))))	chr19:5897283-5897571(-)$1	1	117	125	15.4084
...)))))	chr11:32915265-32915552(+)$1	1	116	124	20.0563
....((((	chr17:2608207-2608450(-)$1	1	103	111	16.2535
))))((((	chr17:80188929-80189158(+)$1	1	94	102	16.6760
)))).)))	chr8:17529265-17529514(-)$1	1	194	202	16.2535
))))))))	chr11:504267-504517(-)$1	1	117	125	16.6760
(((((..(	chr17:77998957-77999226(-)$1	1	51	59	20.0563
(((.((((	chr1:2042190-2042498(+)$1	1	20	28	20.0563
((((((.(	chr1:21978122-21978373(-)$1	1	29	37	16.3239
...((.((	chr6:111136394-111136705(-)$1	1	112	120	15.3380
((.((((.	chr19:35762784-35763061(+)$1	1	25	33	20.0563
....(.((	chr20:4129684-4129943(+)$1	1	2	10	15.5492
(((.((((	chr2:242510488-242510825(+)$1	1	20	28	16.2535
))))))))	chr7:2146288-2146526(-)$1	1	226	234	15.9718
))))).))	chr19:10223607-10223931(+)$1	1	78	86	15.6901
.)))))))	chr19:1947605-1947852(+)$1	1	98	106	20.0563
.(((.(((	chr19:40324302-40324579(-)$1	1	120	128	16.0422
.))))..)	chr11:891560-891813(-)$1	1	105	113	20.0563
))))).((	chr11:1582294-1582574(-)$1	1	180	188	15.4788
.(.((.((	chr4:6785318-6785584(+)$1	1	18	26	16.6760
((((((((	chr19:39653553-39653824(+)$1	1	56	64	16.0422
(((.((((	chr9:136848109-136848350(-)$1	1	20	28	16.2535
))))))))	chr11:70450385-70450621(-)$1	1	182	190	16.0422
((((..((	chr22:31672385-31672663(+)$1	1	114	122	16.6760
.(((((((	chr18:77677548-77677793(-)$1	1	99	107	16.0422
....))))	chr20:43567858-43568075(+)$1	1	166	174	16.2535
((((((..	chr1:2225591-2225821(+)$1	1	119	127	16.1126
((((((((	chr19:15442277-15442572(-)$1	1	11	19	16.3239
)))).)))	chr9:138914090-138914400(-)$1	1	129	137	16.6760
((((((((	chr16:53165390-53165656(+)$1	1	116	124	16.3239
))))....	chr16:428944-429186(-)$1	1	213	221	20.0563
((((((((	chr19:18632465-18632727(-)$1	1	77	85	15.4788
.(((.(((	chr19:41771152-41771414(+)$1	1	21	29	15.5492
((((.(((	chr20:60910243-60910513(-)$1	1	128	136	15.6197
(((((..(	chr17:1394074-1394373(-)$1	1	172	180	20.0563

#PSSM
G : 0.77	g : 0.11	A : 0.08	U : 0.01	C : 0.01	
G : 0.83	g : 0.11	U : 0.02	C : 0.01	A : 0.01	
G : 0.84	g : 0.11	C : 0.02	A : 0.01	
C : 0.73	c : 0.11	G : 0.08	U : 0.04	A : 0.02	
U : 0.77	g : 0.07	G : 0.05	C : 0.04	u : 0.02	c : 0.01	A : 0.01	
G : 0.84	g : 0.09	C : 0.02	U : 0.01	u : 0.01	
G : 0.81	g : 0.11	U : 0.02	C : 0.02	A : 0.01	
G : 0.78	g : 0.11	C : 0.05	U : 0.02	A : 0.01	

#score	1195.408450704223
#seq	71
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_CDS_m3_run1.nuc.txt

#NT
AAAAA	chr1:39800992-39801272(+)$1	280	12	17	15.0000
AAAAA	chr8:30701784-30702089(-)$1	305	23	28	15.0000
AAAAA	chr3:47163771-47164010(-)$1	239	70	75	15.0000
AAAAA	chr9:135204696-135204991(-)$1	295	86	91	15.0000
AAAAA	chr6:4032192-4032458(+)$1	266	150	155	15.0000
AAAAA	chr7:91630816-91631093(+)$1	277	225	230	15.0000
AAAAA	chr15:40914836-40915095(+)$1	259	42	47	15.0000
AAAAA	chr15:77473391-77473730(-)$1	339	326	331	15.0000
AAAAA	chr11:62286119-62286374(-)$1	255	172	177	15.0000
AAAAA	chr1:155450438-155450692(-)$1	254	158	163	15.0000
AAAAA	chr18:9255527-9255771(+)$1	244	32	37	15.0000
AAAAA	chr1:214819573-214819834(+)$1	261	1	6	15.0000
AAAAA	chr5:112177766-112178081(+)$1	315	59	64	15.0000
AAAAA	chr2:170664937-170665164(+)$1	227	70	75	15.0000
AAAAA	chr4:13604157-13604420(-)$1	263	242	247	15.0000
aaaaa	chr18:9256281-9256558(+)$1	277	30	35	15.0000
AAAAA	chr19:52376784-52377070(-)$1	286	273	278	15.0000
AAAAA	chr7:91632302-91632603(+)$1	301	66	71	15.0000
AAAAA	chr3:121415970-121416260(-)$1	290	48	53	15.0000
AAAAA	chr11:5443515-5443781(-)$1	266	40	45	15.0000
AAAAA	chr3:37365266-37365495(+)$1	229	38	43	15.0000
AAAAA	chr1:203766802-203767104(+)$1	302	28	33	15.0000
AAAAA	chr11:62286055-62286282(-)$1	227	80	85	15.0000
AAAAA	chr17:38567935-38568155(-)$1	220	209	214	15.0000
AAAAA	chr6:87965684-87965973(+)$1	289	169	174	15.0000
AAAAA	chr1:197071499-197071747(-)$1	248	14	19	15.0000
AAAAA	chr12:32137918-32138253(+)$1	335	88	93	15.0000
aaaaa	chr18:9255272-9255515(+)$1	243	13	18	15.0000
AAAAA	chr8:30700685-30700961(-)$1	276	103	108	15.0000
AAAAA	chr15:40915353-40915658(+)$1	305	235	240	15.0000
AAAAA	chr8:124267583-124267823(-)$1	240	198	203	15.0000
AAAAA	chr1:214818463-214818805(+)$1	342	256	261	15.0000
AAAAA	chr2:55252223-55252466(-)$1	243	49	54	15.0000
AAAAA	chr3:47952752-47953022(-)$1	270	159	164	15.0000
AAAAA	chr2:109086566-109086892(+)$1	326	213	218	15.0000
AAAAA	chr13:23910509-23910751(-)$1	242	72	77	15.0000
AAAAA	chr15:40917717-40917942(+)$1	225	6	11	15.0000
AAAAA	chr13:23912329-23912600(-)$1	271	219	224	15.0000
AAAAA	chr11:5424061-5424366(-)$1	305	234	239	15.0000
AAAAA	chr15:40915618-40915916(+)$1	298	38	43	15.0000
aaaaa	chr7:128455669-128455986(+)$1	317	89	94	15.0000
AAAAA	chr11:62286358-62286616(-)$1	258	186	191	15.0000
AAAAA	chr3:47951800-47952136(-)$1	336	323	328	15.0000
AAAAA	chr13:23913375-23913631(-)$1	256	9	14	15.0000
AAAAA	chr18:9256408-9256647(+)$1	239	142	147	15.0000
AAAAA	chr8:94747343-94747680(-)$1	337	204	209	15.0000
AAAAA	chr6:87969501-87969785(+)$1	284	101	106	15.0000
AAAAA	chr1:67724667-67724962(+)$1	295	235	240	15.0000
AAAAA	chr13:23908968-23909227(-)$1	259	0	5	15.0000
AAAAA	chr15:40915974-40916267(+)$1	293	69	74	15.0000
AAAAA	chr4:104062885-104063152(-)$1	267	34	39	15.0000
AAAAA	chr4:104067020-104067291(-)$1	271	73	78	15.0000
AAAAA	chr11:62297232-62297514(-)$1	282	164	169	15.0000
AAAAA	chr3:37367775-37368027(+)$1	252	132	137	15.0000
AAAAA	chr15:40914727-40914956(+)$1	229	151	156	15.0000
AAAAA	chr6:111694126-111694442(-)$1	316	117	122	15.0000
AAAAA	chr3:47163049-47163402(-)$1	353	19	24	15.0000

#otherMatches

#Struct PSSM
ttttt	chr4:2330640-2330998(-)$1	358	196	201	15.0000
:::::	chr1:39800992-39801272(+)$1	280	12	17	15.0000
^^^^^	chr8:30701784-30702089(-)$1	305	23	28	15.0000
ppppp	chr3:47163771-47164010(-)$1	239	70	75	15.0000
hhhhm	chr9:135204696-135204991(-)$1	295	86	91	15.0000
:::::	chr6:4032192-4032458(+)$1	266	150	155	15.0000
:::::	chr7:91630816-91631093(+)$1	277	225	230	15.0000
:::::	chr15:40914836-40915095(+)$1	259	42	47	15.0000
ddd]c	chr15:77473391-77473730(-)$1	339	326	331	15.0000
:::::	chr11:62286119-62286374(-)$1	255	172	177	15.0000
^^^^^	chr1:155450438-155450692(-)$1	254	158	163	15.0000
zzzzz	chr18:9255527-9255771(+)$1	244	32	37	15.0000
::::G	chr1:214819573-214819834(+)$1	261	1	6	15.0000
coooo	chr5:112177766-112178081(+)$1	315	59	64	15.0000
^^^^^	chr2:170664937-170665164(+)$1	227	70	75	15.0000
rrrrr	chr4:13604157-13604420(-)$1	263	242	247	15.0000
66ddd	chr18:9256281-9256558(+)$1	277	30	35	15.0000
DDD~~	chr19:52376784-52377070(-)$1	286	273	278	15.0000
gggg:	chr7:91632302-91632603(+)$1	301	66	71	15.0000
:::::	chr3:121415970-121416260(-)$1	290	48	53	15.0000
:::::	chr11:5443515-5443781(-)$1	266	40	45	15.0000
^^^^^	chr3:37365266-37365495(+)$1	229	38	43	15.0000
:::::	chr1:203766802-203767104(+)$1	302	28	33	15.0000
:::::	chr11:62286055-62286282(-)$1	227	80	85	15.0000
BYYFF	chr17:38567935-38568155(-)$1	220	209	214	15.0000
ttttg	chr6:87965684-87965973(+)$1	289	169	174	15.0000
:::::	chr1:197071499-197071747(-)$1	248	14	19	15.0000
:::cc	chr12:32137918-32138253(+)$1	335	88	93	15.0000
:::::	chr18:9255272-9255515(+)$1	243	13	18	15.0000
ddooo	chr8:30700685-30700961(-)$1	276	103	108	15.0000
::::e	chr15:40915353-40915658(+)$1	305	235	240	15.0000
hh"""	chr8:124267583-124267823(-)$1	240	198	203	15.0000
::::i	chr1:214818463-214818805(+)$1	342	256	261	15.0000
(((((	chr2:55252223-55252466(-)$1	243	49	54	15.0000
+++++	chr3:47952752-47953022(-)$1	270	159	164	15.0000
cnnnn	chr2:109086566-109086892(+)$1	326	213	218	15.0000
offff	chr13:23910509-23910751(-)$1	242	72	77	15.0000
:::::	chr15:40917717-40917942(+)$1	225	6	11	15.0000
00000	chr13:23912329-23912600(-)$1	271	219	224	15.0000
ooooc	chr11:5424061-5424366(-)$1	305	234	239	15.0000
:::::	chr15:40915618-40915916(+)$1	298	38	43	15.0000
:::::	chr7:128455669-128455986(+)$1	317	89	94	15.0000
_____	chr11:62286358-62286616(-)$1	258	186	191	15.0000
YYHHH	chr3:47951800-47952136(-)$1	336	323	328	15.0000
ppppp	chr13:23913375-23913631(-)$1	256	9	14	15.0000
:::::	chr18:9256408-9256647(+)$1	239	142	147	15.0000
GGG::	chr8:94747343-94747680(-)$1	337	204	209	15.0000
:::::	chr6:87969501-87969785(+)$1	284	101	106	15.0000
dd$$$	chr1:67724667-67724962(+)$1	295	235	240	15.0000
:JJJJ	chr13:23908968-23909227(-)$1	259	0	5	15.0000
eee!!	chr15:40915974-40916267(+)$1	293	69	74	15.0000
ggggg	chr4:104062885-104063152(-)$1	267	34	39	15.0000
+++++	chr4:104067020-104067291(-)$1	271	73	78	15.0000
####d	chr11:62297232-62297514(-)$1	282	164	169	15.0000
d$$$$	chr3:37367775-37368027(+)$1	252	132	137	15.0000
:::::	chr15:40914727-40914956(+)$1	229	151	156	15.0000
99999	chr6:111694126-111694442(-)$1	316	117	122	15.0000
d::::	chr3:47163049-47163402(-)$1	353	19	24	15.0000

#DB
.....	chr4:2330640-2330998(-)$1	1	196	201	15.0000
.....	chr1:39800992-39801272(+)$1	1	12	17	15.0000
.....	chr8:30701784-30702089(-)$1	1	23	28	15.0000
.....	chr3:47163771-47164010(-)$1	1	70	75	15.0000
((((.	chr9:135204696-135204991(-)$1	1	86	91	15.0000
.....	chr6:4032192-4032458(+)$1	1	150	155	15.0000
.....	chr7:91630816-91631093(+)$1	1	225	230	15.0000
.....	chr15:40914836-40915095(+)$1	1	42	47	15.0000
))).)	chr15:77473391-77473730(-)$1	1	326	331	15.0000
.....	chr11:62286119-62286374(-)$1	1	172	177	15.0000
.....	chr1:155450438-155450692(-)$1	1	158	163	15.0000
.....	chr18:9255527-9255771(+)$1	1	32	37	15.0000
....(	chr1:214819573-214819834(+)$1	1	1	6	15.0000
(....	chr5:112177766-112178081(+)$1	1	59	64	15.0000
.....	chr2:170664937-170665164(+)$1	1	70	75	15.0000
.....	chr4:13604157-13604420(-)$1	1	242	247	15.0000
..)))	chr18:9256281-9256558(+)$1	1	30	35	15.0000
)))..	chr19:52376784-52377070(-)$1	1	273	278	15.0000
)))).	chr7:91632302-91632603(+)$1	1	66	71	15.0000
.....	chr3:121415970-121416260(-)$1	1	48	53	15.0000
.....	chr11:5443515-5443781(-)$1	1	40	45	15.0000
.....	chr3:37365266-37365495(+)$1	1	38	43	15.0000
.....	chr1:203766802-203767104(+)$1	1	28	33	15.0000
.....	chr11:62286055-62286282(-)$1	1	80	85	15.0000
)..))	chr17:38567935-38568155(-)$1	1	209	214	15.0000
....)	chr6:87965684-87965973(+)$1	1	169	174	15.0000
.....	chr1:197071499-197071747(-)$1	1	14	19	15.0000
...((	chr12:32137918-32138253(+)$1	1	88	93	15.0000
.....	chr18:9255272-9255515(+)$1	1	13	18	15.0000
((...	chr8:30700685-30700961(-)$1	1	103	108	15.0000
....(	chr15:40915353-40915658(+)$1	1	235	240	15.0000
((...	chr8:124267583-124267823(-)$1	1	198	203	15.0000
....(	chr1:214818463-214818805(+)$1	1	256	261	15.0000
.....	chr2:55252223-55252466(-)$1	1	49	54	15.0000
.....	chr3:47952752-47953022(-)$1	1	159	164	15.0000
(....	chr2:109086566-109086892(+)$1	1	213	218	15.0000
.))))	chr13:23910509-23910751(-)$1	1	72	77	15.0000
.....	chr15:40917717-40917942(+)$1	1	6	11	15.0000
.....	chr13:23912329-23912600(-)$1	1	219	224	15.0000
....)	chr11:5424061-5424366(-)$1	1	234	239	15.0000
.....	chr15:40915618-40915916(+)$1	1	38	43	15.0000
.....	chr7:128455669-128455986(+)$1	1	89	94	15.0000
.....	chr11:62286358-62286616(-)$1	1	186	191	15.0000
..)))	chr3:47951800-47952136(-)$1	1	323	328	15.0000
.....	chr13:23913375-23913631(-)$1	1	9	14	15.0000
.....	chr18:9256408-9256647(+)$1	1	142	147	15.0000
)))..	chr8:94747343-94747680(-)$1	1	204	209	15.0000
.....	chr6:87969501-87969785(+)$1	1	101	106	15.0000
((...	chr1:67724667-67724962(+)$1	1	235	240	15.0000
.((((	chr13:23908968-23909227(-)$1	1	0	5	15.0000
(((..	chr15:40915974-40916267(+)$1	1	69	74	15.0000
(((((	chr4:104062885-104063152(-)$1	1	34	39	15.0000
.....	chr4:104067020-104067291(-)$1	1	73	78	15.0000
....(	chr11:62297232-62297514(-)$1	1	164	169	15.0000
(....	chr3:37367775-37368027(+)$1	1	132	137	15.0000
.....	chr15:40914727-40914956(+)$1	1	151	156	15.0000
.....	chr6:111694126-111694442(-)$1	1	117	122	15.0000
)....	chr3:47163049-47163402(-)$1	1	19	24	15.0000

#PSSM
A : 0.93	a : 0.06	
A : 0.93	a : 0.06	
A : 0.93	a : 0.06	
A : 0.93	a : 0.06	
A : 0.93	a : 0.06	

#score	870.0000000000001
#seq	58
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_UTR_m2_run2.nuc.txt

#NT
UUUUCCUC	chr12:49330397-49330683(-)$1	286	210	218	19.9558
UUUUCCUU	chr8:103876174-103876456(-)$1	282	95	103	16.9411
ucuuccuc	chr16:2819087-2819355(+)$1	268	28	36	16.0588
UUUUCCUC	chr6:32153831-32154036(-)$1	205	105	113	19.9558
uuuuucuc	chr16:74339386-74339694(-)$1	308	67	75	16.2794
UUUCCCUC	chr8:101931099-101931341(-)$1	242	36	44	15.7647
uuuuucuc	chr12:48437290-48437542(-)$1	252	91	99	16.2794
UUUUCCUU	chr16:69731892-69732167(+)$1	275	31	39	16.9411
UUUUCCUC	chr1:202128760-202129019(-)$1	259	179	187	19.9558
UUUUCCUU	chr17:26937084-26937341(-)$1	257	90	98	16.9411
GUUUCCUC	chr19:50432033-50432287(-)$1	254	76	84	15.6911
UUUUUCUC	chr1:8413107-8413367(-)$1	260	84	92	16.2794
UUUUCCUC	chr3:75779279-75779552(-)$1	273	109	117	19.9558
UUUUCCUU	chr6:52367490-52367790(-)$1	300	134	142	16.9411
uucuccuc	chr17:30808509-30808767(+)$1	258	74	82	15.3970
UUUUCCCC	chr1:52981259-52981535(-)$1	276	24	32	15.2499
UUUUCCUC	chr1:202128656-202128941(-)$1	285	101	109	19.9558
UCUUCCUC	chr11:6635107-6635430(-)$1	323	172	180	16.0588
UUUUCCUC	chr19:45912065-45912318(-)$1	253	98	106	19.9558
UCUUCCUC	chr6:30654011-30654286(-)$1	275	232	240	16.0588
cuuuccuc	chr16:69733964-69734248(+)$1	284	35	43	15.7647
uuuuucuc	chr6:27223664-27223897(+)$1	233	11	19	16.2794
ucuuccuc	chr16:58054443-58054736(+)$1	293	25	33	16.0588
UUUUCCCC	chr11:57585399-57585694(+)$1	295	105	113	15.2499
UUUUCCUC	chr1:202128609-202128844(-)$1	235	4	12	19.9558
UUUUCUUC	chr15:65809044-65809361(-)$1	317	100	108	15.3970
uucuccuc	chr17:30808482-30808709(+)$1	227	101	109	15.3970
ucuuccuc	chr3:52083635-52083857(-)$1	222	56	64	16.0588
UUUCCCUC	chr17:4174724-4175026(-)$1	302	24	32	15.7647
UUUUUCUC	chr2:85547913-85548200(-)$1	287	209	217	16.2794
uuuuccuu	chr4:89628918-89629222(+)$1	304	159	167	16.9411
UUUUCCUU	chr20:43536208-43536453(+)$1	245	81	89	16.9411
uuuuccuc	chr12:65089699-65089969(+)$1	270	162	170	19.9558
ucuuccuc	chr16:2819022-2819287(+)$1	265	93	101	16.0588
uuuuccua	chrX:56592285-56592537(+)$1	252	91	99	16.3529
uuuuccuc	chr2:240899088-240899348(-)$1	260	146	154	19.9558
UUUUUCUC	chr11:57585683-57585947(+)$1	264	48	56	16.2794
UUUUCCUG	chr12:56736570-56736821(-)$1	251	157	165	16.2794
uauuccuc	chr7:106849661-106849927(-)$1	266	219	227	15.7647
CUUUCCUC	chr10:45951035-45951280(-)$1	245	39	47	15.7647
UUUUCUUC	chr22:22050724-22051007(+)$1	283	120	128	15.3970
UUCUCCUC	chr1:248040205-248040460(+)$1	255	8	16	15.3970
Uuuuccuu	chr1:205585309-205585532(-)$1	223	87	95	16.9411
uuuuccua	chr5:70954118-70954393(+)$1	275	171	179	16.3529
Uuuuccuu	chr1:205585250-205585485(-)$1	235	40	48	16.9411
GUUUCCUC	chr1:193057888-193058174(+)$1	286	69	77	15.6911
uuuuucuc	chr6:27223522-27223747(+)$1	225	153	161	16.2794
UUUUCCUG	chr19:54379271-54379496(+)$1	225	22	30	16.2794
UUUUUCUC	chr6:24719454-24719706(-)$1	252	6	14	16.2794
CUUUCCUC	chr10:72182024-72182268(+)$1	244	122	130	15.7647
UUUUCCUC	chr2:26358803-26359057(+)$1	254	104	112	19.9558
UUUUUCUC	chr14:21463031-21463347(+)$1	316	119	127	16.2794
UUUACCUC	chr12:77416267-77416567(-)$1	300	62	70	15.4705
CUUUCCUC	chr1:151669366-151669583(+)$1	217	138	146	15.7647
uuuuccuc	chr19:54377739-54377980(+)$1	241	109	117	19.9558
UGUUCCUC	chr5:176917315-176917556(-)$1	241	102	110	15.6911
UUUUCCUC	chr1:151030701-151030968(-)$1	267	28	36	19.9558
UUUUCCUA	chr11:118267290-118267556(+)$1	266	153	161	16.3529
uuuuccuu	chr14:23768717-23768969(-)$1	252	18	26	16.9411
GUUUccuc	chrX:133930582-133930860(-)$1	278	80	88	15.6911
UUucccuc	chr19:4390348-4390617(-)$1	269	54	62	15.7647
UUUUCCUU	chr5:114859434-114859723(-)$1	289	164	172	16.9411
UUUUCCUC	chrX:109416795-109417054(+)$1	259	1	9	19.9558
UUUUCCUU	chr7:143002957-143003268(+)$1	311	15	23	16.9411
uuucccuc	chr8:27316648-27316963(+)$1	315	114	122	15.7647
UUUUCUUC	chr12:112443489-112443750(-)$1	261	94	102	15.3970
uuucccuc	chr17:46692070-46692329(-)$1	259	102	110	15.7647

#otherMatches

#Struct PSSM
::::::::	chr17:57778100-57778397(-)$1	297	67	75	15.7647
::::ccco	chr12:49330397-49330683(-)$1	286	210	218	19.9558
yyyyyyyy	chr8:103876174-103876456(-)$1	282	95	103	16.9411
KKBB{GGG	chr16:2819087-2819355(+)$1	268	28	36	16.0588
::::::::	chr6:32153831-32154036(-)$1	205	105	113	19.9558
::::::::	chr16:74339386-74339694(-)$1	308	67	75	16.2794
JJJ:::::	chr8:101931099-101931341(-)$1	242	36	44	15.7647
>>>>>>>>	chr12:48437290-48437542(-)$1	252	91	99	16.2794
6666bb::	chr16:69731892-69732167(+)$1	275	31	39	16.9411
\\\\EEEE	chr1:202128760-202129019(-)$1	259	179	187	19.9558
>>>>>>>>	chr17:26937084-26937341(-)$1	257	90	98	16.9411
c!!bbqqq	chr19:50432033-50432287(-)$1	254	76	84	15.6911
ggggg:::	chr1:8413107-8413367(-)$1	260	84	92	16.2794
::::::::	chr3:75779279-75779552(-)$1	273	109	117	19.9558
::::::::	chr6:52367490-52367790(-)$1	300	134	142	16.9411
2ccc::gg	chr17:30808509-30808767(+)$1	258	74	82	15.3970
::::::::	chr1:52981259-52981535(-)$1	276	24	32	15.2499
::::::cc	chr1:202128656-202128941(-)$1	285	101	109	19.9558
cc::::::	chr11:6635107-6635430(-)$1	323	172	180	16.0588
^^^^^^^^	chr19:45912065-45912318(-)$1	253	98	106	19.9558
::::::::	chr6:30654011-30654286(-)$1	275	232	240	16.0588
dddd::::	chr16:69733964-69734248(+)$1	284	35	43	15.7647
^^^^^^^^	chr6:27223664-27223897(+)$1	233	11	19	16.2794
::::::::	chr16:58054443-58054736(+)$1	293	25	33	16.0588
GGGGGGG:	chr11:57585399-57585694(+)$1	295	105	113	15.2499
::::::cc	chr1:202128609-202128844(-)$1	235	4	12	19.9558
::::::::	chr15:65809044-65809361(-)$1	317	100	108	15.3970
::::::gg	chr17:30808482-30808709(+)$1	227	101	109	15.3970
::::::::	chr3:52083635-52083857(-)$1	222	56	64	16.0588
tttttttt	chr17:4174724-4175026(-)$1	302	24	32	15.7647
fffnnnnn	chr2:85547913-85548200(-)$1	287	209	217	16.2794
qqqqqqqq	chr4:89628918-89629222(+)$1	304	159	167	16.9411
++++++++	chr20:43536208-43536453(+)$1	245	81	89	16.9411
E:::::::	chr12:65089699-65089969(+)$1	270	162	170	19.9558
::::::::	chr16:2819022-2819287(+)$1	265	93	101	16.0588
::::::::	chrX:56592285-56592537(+)$1	252	91	99	16.3529
::::::::	chr2:240899088-240899348(-)$1	260	146	154	19.9558
ee[fffff	chr11:57585683-57585947(+)$1	264	48	56	16.2794
zzzzzzzz	chr12:56736570-56736821(-)$1	251	157	165	16.2794
::::::::	chr7:106849661-106849927(-)$1	266	219	227	15.7647
::::::::	chr10:45951035-45951280(-)$1	245	39	47	15.7647
hhhhhhh:	chr22:22050724-22051007(+)$1	283	120	128	15.3970
::::::::	chr1:248040205-248040460(+)$1	255	8	16	15.3970
___DDDD}	chr1:205585309-205585532(-)$1	223	87	95	16.9411
::::GGGG	chr5:70954118-70954393(+)$1	275	171	179	16.3529
EEETTTTT	chr1:205585250-205585485(-)$1	235	40	48	16.9411
fff:::::	chr1:193057888-193058174(+)$1	286	69	77	15.6911
::::::::	chr6:27223522-27223747(+)$1	225	153	161	16.2794
==$$$$$f	chr19:54379271-54379496(+)$1	225	22	30	16.2794
G:::::::	chr6:24719454-24719706(-)$1	252	6	14	16.2794
hqqqqqqq	chr10:72182024-72182268(+)$1	244	122	130	15.7647
::::::::	chr2:26358803-26359057(+)$1	254	104	112	19.9558
MMMMCCCK	chr14:21463031-21463347(+)$1	316	119	127	16.2794
FFFF{EEE	chr12:77416267-77416567(-)$1	300	62	70	15.4705
eeee22dd	chr1:151669366-151669583(+)$1	217	138	146	15.7647
::::::::	chr19:54377739-54377980(+)$1	241	109	117	19.9558
DDDDOOOO	chr5:176917315-176917556(-)$1	241	102	110	15.6911
::::::::	chr1:151030701-151030968(-)$1	267	28	36	19.9558
::::::::	chr11:118267290-118267556(+)$1	266	153	161	16.3529
d+++++++	chr14:23768717-23768969(-)$1	252	18	26	16.9411
>>>>>>>>	chrX:133930582-133930860(-)$1	278	80	88	15.6911
^^^^^^^^	chr19:4390348-4390617(-)$1	269	54	62	15.7647
###cccmm	chr5:114859434-114859723(-)$1	289	164	172	16.9411
:::::BB{	chrX:109416795-109417054(+)$1	259	1	9	19.9558
::::::::	chr7:143002957-143003268(+)$1	311	15	23	16.9411
e:::::::	chr8:27316648-27316963(+)$1	315	114	122	15.7647
:::::::c	chr12:112443489-112443750(-)$1	261	94	102	15.3970
^^^^^^^^	chr17:46692070-46692329(-)$1	259	102	110	15.7647

#DB
........	chr17:57778100-57778397(-)$1	1	67	75	15.7647
....(((.	chr12:49330397-49330683(-)$1	1	210	218	19.9558
........	chr8:103876174-103876456(-)$1	1	95	103	16.9411
..((.(((	chr16:2819087-2819355(+)$1	1	28	36	16.0588
........	chr6:32153831-32154036(-)$1	1	105	113	19.9558
........	chr16:74339386-74339694(-)$1	1	67	75	16.2794
(((.....	chr8:101931099-101931341(-)$1	1	36	44	15.7647
........	chr12:48437290-48437542(-)$1	1	91	99	16.2794
....))..	chr16:69731892-69732167(+)$1	1	31	39	16.9411
....))))	chr1:202128760-202129019(-)$1	1	179	187	19.9558
........	chr17:26937084-26937341(-)$1	1	90	98	16.9411
(..((...	chr19:50432033-50432287(-)$1	1	76	84	15.6911
)))))...	chr1:8413107-8413367(-)$1	1	84	92	16.2794
........	chr3:75779279-75779552(-)$1	1	109	117	19.9558
........	chr6:52367490-52367790(-)$1	1	134	142	16.9411
.)))..((	chr17:30808509-30808767(+)$1	1	74	82	15.3970
........	chr1:52981259-52981535(-)$1	1	24	32	15.2499
......((	chr1:202128656-202128941(-)$1	1	101	109	19.9558
))......	chr11:6635107-6635430(-)$1	1	172	180	16.0588
........	chr19:45912065-45912318(-)$1	1	98	106	19.9558
........	chr6:30654011-30654286(-)$1	1	232	240	16.0588
))))....	chr16:69733964-69734248(+)$1	1	35	43	15.7647
........	chr6:27223664-27223897(+)$1	1	11	19	16.2794
........	chr16:58054443-58054736(+)$1	1	25	33	16.0588
(((((((.	chr11:57585399-57585694(+)$1	1	105	113	15.2499
......((	chr1:202128609-202128844(-)$1	1	4	12	19.9558
........	chr15:65809044-65809361(-)$1	1	100	108	15.3970
......((	chr17:30808482-30808709(+)$1	1	101	109	15.3970
........	chr3:52083635-52083857(-)$1	1	56	64	16.0588
........	chr17:4174724-4175026(-)$1	1	24	32	15.7647
(((.....	chr2:85547913-85548200(-)$1	1	209	217	16.2794
........	chr4:89628918-89629222(+)$1	1	159	167	16.9411
........	chr20:43536208-43536453(+)$1	1	81	89	16.9411
).......	chr12:65089699-65089969(+)$1	1	162	170	19.9558
........	chr16:2819022-2819287(+)$1	1	93	101	16.0588
........	chrX:56592285-56592537(+)$1	1	91	99	16.3529
........	chr2:240899088-240899348(-)$1	1	146	154	19.9558
((.(((((	chr11:57585683-57585947(+)$1	1	48	56	16.2794
........	chr12:56736570-56736821(-)$1	1	157	165	16.2794
........	chr7:106849661-106849927(-)$1	1	219	227	15.7647
........	chr10:45951035-45951280(-)$1	1	39	47	15.7647
))))))).	chr22:22050724-22051007(+)$1	1	120	128	15.3970
........	chr1:248040205-248040460(+)$1	1	8	16	15.3970
...)))).	chr1:205585309-205585532(-)$1	1	87	95	16.9411
....((((	chr5:70954118-70954393(+)$1	1	171	179	16.3529
(((.....	chr1:205585250-205585485(-)$1	1	40	48	16.9411
))).....	chr1:193057888-193058174(+)$1	1	69	77	15.6911
........	chr6:27223522-27223747(+)$1	1	153	161	16.2794
((.....(	chr19:54379271-54379496(+)$1	1	22	30	16.2794
(.......	chr6:24719454-24719706(-)$1	1	6	14	16.2794
(.......	chr10:72182024-72182268(+)$1	1	122	130	15.7647
........	chr2:26358803-26359057(+)$1	1	104	112	19.9558
....(((.	chr14:21463031-21463347(+)$1	1	119	127	16.2794
((((.(((	chr12:77416267-77416567(-)$1	1	62	70	15.4705
))))..))	chr1:151669366-151669583(+)$1	1	138	146	15.7647
........	chr19:54377739-54377980(+)$1	1	109	117	19.9558
((((....	chr5:176917315-176917556(-)$1	1	102	110	15.6911
........	chr1:151030701-151030968(-)$1	1	28	36	19.9558
........	chr11:118267290-118267556(+)$1	1	153	161	16.3529
(.......	chr14:23768717-23768969(-)$1	1	18	26	16.9411
........	chrX:133930582-133930860(-)$1	1	80	88	15.6911
........	chr19:4390348-4390617(-)$1	1	54	62	15.7647
...(((..	chr5:114859434-114859723(-)$1	1	164	172	16.9411
.....((.	chrX:109416795-109417054(+)$1	1	1	9	19.9558
........	chr7:143002957-143003268(+)$1	1	15	23	16.9411
).......	chr8:27316648-27316963(+)$1	1	114	122	15.7647
.......(	chr12:112443489-112443750(-)$1	1	94	102	15.3970
........	chr17:46692070-46692329(-)$1	1	102	110	15.7647

#PSSM
U : 0.60	u : 0.29	G : 0.04	C : 0.04	c : 0.01	
U : 0.60	u : 0.26	c : 0.05	C : 0.02	A : 0.01	a : 0.01	G : 0.01	
U : 0.63	u : 0.32	c : 0.02	C : 0.01	
U : 0.60	u : 0.30	c : 0.04	C : 0.02	A : 0.01	
C : 0.55	c : 0.30	U : 0.07	u : 0.05	
C : 0.58	c : 0.36	U : 0.04	
U : 0.60	u : 0.36	C : 0.02	
C : 0.48	c : 0.27	U : 0.10	u : 0.05	a : 0.02	G : 0.02	A : 0.01	

#score	1144.7941176470586
#seq	68
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_transcript_m3_run1.nuc.txt

#NT
UGGA	chr10:61659309-61659557(-)$1	248	55	59	12.0000
UGGA	chr6:114270231-114270470(-)$1	239	57	61	12.0000
UGGA	chr1:17380342-17380626(-)$1	284	22	26	12.0000
UGGA	chr1:36807207-36807420(-)$1	213	24	28	12.0000
UGGA	chr12:53691575-53691791(+)$1	216	86	90	12.0000
UGGA	chr7:43687621-43687867(-)$1	246	80	84	12.0000
UGGA	chr16:1735255-1735532(+)$1	277	223	227	12.0000
UGGA	chr8:87568320-87568620(+)$1	300	116	120	12.0000
UGGA	chr7:98992016-98992273(+)$1	257	61	65	12.0000
UGGA	chr5:43704255-43704515(+)$1	260	144	148	12.0000
UGGA	chr16:28840651-28840885(+)$1	234	4	8	12.0000
UGGA	chr14:23944873-23945087(+)$1	214	184	188	12.0000
UGGA	chr1:32377196-32377420(-)$1	224	10	14	12.0000
UGGA	chr3:136035701-136035953(+)$1	252	170	174	12.0000
UGGA	chr10:64968133-64968391(-)$1	258	165	169	12.0000
ugga	chr9:132677560-132677840(-)$1	280	141	145	12.0000
UGGA	chr9:139733683-139733977(+)$1	294	121	125	12.0000
UGGA	chr17:79976863-79977123(-)$1	260	32	36	12.0000
UGGA	chr1:182354581-182354791(-)$1	210	8	12	12.0000
UGGA	chr17:80044827-80045035(-)$1	208	23	27	12.0000
ugga	chr5:32591602-32591892(+)$1	290	226	230	12.0000
UGGA	chr4:57877052-57877310(+)$1	258	12	16	12.0000
UGGA	chr18:19359353-19359595(+)$1	242	116	120	12.0000
Ugga	chr12:120587459-120587708(-)$1	249	14	18	12.0000
UGGA	chr1:156563711-156564006(+)$1	295	97	101	12.0000
UGGA	chr20:43127246-43127494(-)$1	248	49	53	12.0000
UGGA	chr2:97525736-97525973(-)$1	237	27	31	12.0000
UGGA	chr1:155297869-155298125(+)$1	256	30	34	12.0000
UGGA	chr7:99695144-99695398(-)$1	254	129	133	12.0000
UGGA	chr10:96356706-96356970(+)$1	264	185	189	12.0000
UGGA	chr1:198703361-198703641(+)$1	280	124	128	12.0000
UGGA	chr11:2017649-2017910(-)$1	261	152	156	12.0000
UGGA	chr10:135180367-135180598(-)$1	231	19	23	12.0000
UGGA	chr1:26861689-26862014(+)$1	325	2	6	12.0000
UGGA	chr12:1863522-1863774(+)$1	252	66	70	12.0000
UGGA	chr1:153746193-153746502(+)$1	309	160	164	12.0000
UGGA	chr6:44219471-44219689(+)$1	218	4	8	12.0000
UGGA	chr17:40555410-40555678(-)$1	268	49	53	12.0000
UGGA	chr3:15115219-15115498(-)$1	279	19	23	12.0000
UGGA	chr2:73477461-73477666(+)$1	205	46	50	12.0000
UGGA	chr3:47628919-47629198(-)$1	279	110	114	12.0000
UGGA	chr8:48697573-48697794(-)$1	221	69	73	12.0000
ugga	chr1:109927034-109927323(-)$1	289	56	60	12.0000
UGGA	chr12:54063575-54063824(-)$1	249	181	185	12.0000
UGGA	chrX:53577838-53578130(-)$1	292	50	54	12.0000
UGGA	chr11:118923362-118923640(-)$1	278	122	126	12.0000
UGGA	chr2:27597455-27597657(+)$1	202	132	136	12.0000
UGGA	chr8:42022488-42022739(+)$1	251	238	242	12.0000
UGGA	chr2:38545958-38546236(-)$1	278	87	91	12.0000
UGGA	chr1:32384469-32384675(-)$1	206	28	32	12.0000
UGGA	chr22:19484836-19485068(+)$1	232	99	103	12.0000
UGGA	chr11:62327184-62327397(-)$1	213	23	27	12.0000
ugga	chr17:5346902-5347179(-)$1	277	16	20	12.0000
UGGA	chr7:129760517-129760776(+)$1	259	81	85	12.0000
UGGA	chrX:119346294-119346545(-)$1	251	19	23	12.0000
UGGA	chr11:122931274-122931495(-)$1	221	5	9	12.0000
UGGA	chr1:6245810-6246079(-)$1	269	120	124	12.0000
UGGA	chr1:22192153-22192404(-)$1	251	204	208	12.0000
UGGA	chr18:8636238-8636456(+)$1	218	73	77	12.0000
UGGA	chr3:193355638-193355954(+)$1	316	113	117	12.0000
UGGA	chr6:129898253-129898521(-)$1	268	188	192	12.0000
UGGA	chr13:114149823-114150131(+)$1	308	39	43	12.0000
UGGA	chr6:17773657-17773902(-)$1	245	45	49	12.0000
UGGA	chr17:7481382-7481595(+)$1	213	24	28	12.0000
UGGA	chr1:207236395-207236656(+)$1	261	112	116	12.0000
UGGA	chr13:28196907-28197173(+)$1	266	113	117	12.0000
UGGA	chr1:38269919-38270184(-)$1	265	19	23	12.0000
UGGA	chr12:80226106-80226375(-)$1	269	33	37	12.0000
UGGA	chrX:133634476-133634734(+)$1	258	97	101	12.0000
UGGA	chr9:33278007-33278324(+)$1	317	106	110	12.0000
UGGA	chr2:160604812-160605154(+)$1	342	311	315	12.0000
UGGA	chr4:109588516-109588744(+)$1	228	58	62	12.0000
UGGA	chr10:71968930-71969147(-)$1	217	140	144	12.0000
UGGA	chr1:179965728-179965981(+)$1	253	0	4	12.0000
UGGA	chr19:9940540-9940764(+)$1	224	41	45	12.0000
UGGA	chr6:160201962-160202233(-)$1	271	29	33	12.0000
UGGA	chr17:7415437-7415686(+)$1	249	3	7	12.0000
UGGA	chr1:110128838-110129068(+)$1	230	39	43	12.0000
UGGA	chr5:81573452-81573684(-)$1	232	23	27	12.0000
UGGA	chr7:128398947-128399173(+)$1	226	59	63	12.0000

#otherMatches

#Struct PSSM
]a22	chr22:20099854-20100107(-)$1	253	236	240	12.0000
iiii	chr10:61659309-61659557(-)$1	248	55	59	12.0000
dooo	chr6:114270231-114270470(-)$1	239	57	61	12.0000
H:::	chr1:17380342-17380626(-)$1	284	22	26	12.0000
ccc:	chr1:36807207-36807420(-)$1	213	24	28	12.0000
[a[a	chr12:53691575-53691791(+)$1	216	86	90	12.0000
gccc	chr7:43687621-43687867(-)$1	246	80	84	12.0000
[bbm	chr16:1735255-1735532(+)$1	277	223	227	12.0000
dddd	chr8:87568320-87568620(+)$1	300	116	120	12.0000
eeec	chr7:98992016-98992273(+)$1	257	61	65	12.0000
c]cc	chr5:43704255-43704515(+)$1	260	144	148	12.0000
EEEE	chr16:28840651-28840885(+)$1	234	4	8	12.0000
D}AY	chr14:23944873-23945087(+)$1	214	184	188	12.0000
"bbq	chr1:32377196-32377420(-)$1	224	10	14	12.0000
eee:	chr3:136035701-136035953(+)$1	252	170	174	12.0000
ggg:	chr10:64968133-64968391(-)$1	258	165	169	12.0000
ee]c	chr9:132677560-132677840(-)$1	280	141	145	12.0000
0000	chr9:139733683-139733977(+)$1	294	121	125	12.0000
LJJJ	chr17:79976863-79977123(-)$1	260	32	36	12.0000
FFLL	chr1:182354581-182354791(-)$1	210	8	12	12.0000
Dccc	chr17:80044827-80045035(-)$1	208	23	27	12.0000
ff22	chr5:32591602-32591892(+)$1	290	226	230	12.0000
eeee	chr4:57877052-57877310(+)$1	258	12	16	12.0000
meee	chr18:19359353-19359595(+)$1	242	116	120	12.0000
ccc[	chr12:120587459-120587708(-)$1	249	14	18	12.0000
ccc[	chr1:156563711-156564006(+)$1	295	97	101	12.0000
cc::	chr20:43127246-43127494(-)$1	248	49	53	12.0000
cc!!	chr2:97525736-97525973(-)$1	237	27	31	12.0000
dddd	chr1:155297869-155298125(+)$1	256	30	34	12.0000
FFFF	chr7:99695144-99695398(-)$1	254	129	133	12.0000
9ccc	chr10:96356706-96356970(+)$1	264	185	189	12.0000
!!bb	chr1:198703361-198703641(+)$1	280	124	128	12.0000
ccc#	chr11:2017649-2017910(-)$1	261	152	156	12.0000
ddd$	chr10:135180367-135180598(-)$1	231	19	23	12.0000
::::	chr1:26861689-26862014(+)$1	325	2	6	12.0000
oooo	chr12:1863522-1863774(+)$1	252	66	70	12.0000
fff!	chr1:153746193-153746502(+)$1	309	160	164	12.0000
dddd	chr6:44219471-44219689(+)$1	218	4	8	12.0000
{JJJ	chr17:40555410-40555678(-)$1	268	49	53	12.0000
BBKK	chr3:15115219-15115498(-)$1	279	19	23	12.0000
%fff	chr2:73477461-73477666(+)$1	205	46	50	12.0000
cc""	chr3:47628919-47629198(-)$1	279	110	114	12.0000
GGGG	chr8:48697573-48697794(-)$1	221	69	73	12.0000
hhh[	chr1:109927034-109927323(-)$1	289	56	60	12.0000
dFFF	chr12:54063575-54063824(-)$1	249	181	185	12.0000
ELLL	chrX:53577838-53578130(-)$1	292	50	54	12.0000
[ddd	chr11:118923362-118923640(-)$1	278	122	126	12.0000
ggg:	chr2:27597455-27597657(+)$1	202	132	136	12.0000
ddd5	chr8:42022488-42022739(+)$1	251	238	242	12.0000
fddd	chr2:38545958-38546236(-)$1	278	87	91	12.0000
gggg	chr1:32384469-32384675(-)$1	206	28	32	12.0000
]ccc	chr22:19484836-19485068(+)$1	232	99	103	12.0000
fff!	chr11:62327184-62327397(-)$1	213	23	27	12.0000
FFFF	chr17:5346902-5347179(-)$1	277	16	20	12.0000
[bbo	chr7:129760517-129760776(+)$1	259	81	85	12.0000
ppdd	chrX:119346294-119346545(-)$1	251	19	23	12.0000
iiii	chr11:122931274-122931495(-)$1	221	5	9	12.0000
nnnn	chr1:6245810-6246079(-)$1	269	120	124	12.0000
EEEE	chr1:22192153-22192404(-)$1	251	204	208	12.0000
ssss	chr18:8636238-8636456(+)$1	218	73	77	12.0000
ddd[	chr3:193355638-193355954(+)$1	316	113	117	12.0000
ddd[	chr6:129898253-129898521(-)$1	268	188	192	12.0000
DDD:	chr13:114149823-114150131(+)$1	308	39	43	12.0000
NDDD	chr6:17773657-17773902(-)$1	245	45	49	12.0000
E{GG	chr17:7481382-7481595(+)$1	213	24	28	12.0000
3eee	chr1:207236395-207236656(+)$1	261	112	116	12.0000
FF::	chr13:28196907-28197173(+)$1	266	113	117	12.0000
cccn	chr1:38269919-38270184(-)$1	265	19	23	12.0000
!ccc	chr12:80226106-80226375(-)$1	269	33	37	12.0000
gggg	chrX:133634476-133634734(+)$1	258	97	101	12.0000
ffff	chr9:33278007-33278324(+)$1	317	106	110	12.0000
mccc	chr2:160604812-160605154(+)$1	342	311	315	12.0000
d::d	chr4:109588516-109588744(+)$1	228	58	62	12.0000
uuuu	chr10:71968930-71969147(-)$1	217	140	144	12.0000
:GGG	chr1:179965728-179965981(+)$1	253	0	4	12.0000
LFFF	chr19:9940540-9940764(+)$1	224	41	45	12.0000
bbbb	chr6:160201962-160202233(-)$1	271	29	33	12.0000
DDD{	chr17:7415437-7415686(+)$1	249	3	7	12.0000
ddmm	chr1:110128838-110129068(+)$1	230	39	43	12.0000
!!dd	chr5:81573452-81573684(-)$1	232	23	27	12.0000
KFFF	chr7:128398947-128399173(+)$1	226	59	63	12.0000

#DB
.)..	chr22:20099854-20100107(-)$1	1	236	240	12.0000
))))	chr10:61659309-61659557(-)$1	1	55	59	12.0000
(...	chr6:114270231-114270470(-)$1	1	57	61	12.0000
(...	chr1:17380342-17380626(-)$1	1	22	26	12.0000
))).	chr1:36807207-36807420(-)$1	1	24	28	12.0000
.(.(	chr12:53691575-53691791(+)$1	1	86	90	12.0000
)(((	chr7:43687621-43687867(-)$1	1	80	84	12.0000
.((.	chr16:1735255-1735532(+)$1	1	223	227	12.0000
))))	chr8:87568320-87568620(+)$1	1	116	120	12.0000
((((	chr7:98992016-98992273(+)$1	1	61	65	12.0000
).))	chr5:43704255-43704515(+)$1	1	144	148	12.0000
((((	chr16:28840651-28840885(+)$1	1	4	8	12.0000
).).	chr14:23944873-23945087(+)$1	1	184	188	12.0000
.((.	chr1:32377196-32377420(-)$1	1	10	14	12.0000
))).	chr3:136035701-136035953(+)$1	1	170	174	12.0000
))).	chr10:64968133-64968391(-)$1	1	165	169	12.0000
)).)	chr9:132677560-132677840(-)$1	1	141	145	12.0000
....	chr9:139733683-139733977(+)$1	1	121	125	12.0000
.(((	chr17:79976863-79977123(-)$1	1	32	36	12.0000
((..	chr1:182354581-182354791(-)$1	1	8	12	12.0000
((((	chr17:80044827-80045035(-)$1	1	23	27	12.0000
))..	chr5:32591602-32591892(+)$1	1	226	230	12.0000
((((	chr4:57877052-57877310(+)$1	1	12	16	12.0000
.)))	chr18:19359353-19359595(+)$1	1	116	120	12.0000
(((.	chr12:120587459-120587708(-)$1	1	14	18	12.0000
(((.	chr1:156563711-156564006(+)$1	1	97	101	12.0000
))..	chr20:43127246-43127494(-)$1	1	49	53	12.0000
((..	chr2:97525736-97525973(-)$1	1	27	31	12.0000
))))	chr1:155297869-155298125(+)$1	1	30	34	12.0000
))))	chr7:99695144-99695398(-)$1	1	129	133	12.0000
.)))	chr10:96356706-96356970(+)$1	1	185	189	12.0000
..((	chr1:198703361-198703641(+)$1	1	124	128	12.0000
(((.	chr11:2017649-2017910(-)$1	1	152	156	12.0000
(((.	chr10:135180367-135180598(-)$1	1	19	23	12.0000
....	chr1:26861689-26862014(+)$1	1	2	6	12.0000
....	chr12:1863522-1863774(+)$1	1	66	70	12.0000
(((.	chr1:153746193-153746502(+)$1	1	160	164	12.0000
((((	chr6:44219471-44219689(+)$1	1	4	8	12.0000
.(((	chr17:40555410-40555678(-)$1	1	49	53	12.0000
((..	chr3:15115219-15115498(-)$1	1	19	23	12.0000
.(((	chr2:73477461-73477666(+)$1	1	46	50	12.0000
((..	chr3:47628919-47629198(-)$1	1	110	114	12.0000
((((	chr8:48697573-48697794(-)$1	1	69	73	12.0000
(((.	chr1:109927034-109927323(-)$1	1	56	60	12.0000
))))	chr12:54063575-54063824(-)$1	1	181	185	12.0000
(...	chrX:53577838-53578130(-)$1	1	50	54	12.0000
.(((	chr11:118923362-118923640(-)$1	1	122	126	12.0000
))).	chr2:27597455-27597657(+)$1	1	132	136	12.0000
))).	chr8:42022488-42022739(+)$1	1	238	242	12.0000
))))	chr2:38545958-38546236(-)$1	1	87	91	12.0000
((((	chr1:32384469-32384675(-)$1	1	28	32	12.0000
.)))	chr22:19484836-19485068(+)$1	1	99	103	12.0000
(((.	chr11:62327184-62327397(-)$1	1	23	27	12.0000
((((	chr17:5346902-5347179(-)$1	1	16	20	12.0000
.((.	chr7:129760517-129760776(+)$1	1	81	85	12.0000
..))	chrX:119346294-119346545(-)$1	1	19	23	12.0000
((((	chr11:122931274-122931495(-)$1	1	5	9	12.0000
....	chr1:6245810-6246079(-)$1	1	120	124	12.0000
))))	chr1:22192153-22192404(-)$1	1	204	208	12.0000
....	chr18:8636238-8636456(+)$1	1	73	77	12.0000
(((.	chr3:193355638-193355954(+)$1	1	113	117	12.0000
(((.	chr6:129898253-129898521(-)$1	1	188	192	12.0000
(((.	chr13:114149823-114150131(+)$1	1	39	43	12.0000
.(((	chr6:17773657-17773902(-)$1	1	45	49	12.0000
(.((	chr17:7481382-7481595(+)$1	1	24	28	12.0000
.)))	chr1:207236395-207236656(+)$1	1	112	116	12.0000
((..	chr13:28196907-28197173(+)$1	1	113	117	12.0000
(((.	chr1:38269919-38270184(-)$1	1	19	23	12.0000
.(((	chr12:80226106-80226375(-)$1	1	33	37	12.0000
((((	chrX:133634476-133634734(+)$1	1	97	101	12.0000
))))	chr9:33278007-33278324(+)$1	1	106	110	12.0000
.)))	chr2:160604812-160605154(+)$1	1	311	315	12.0000
)..(	chr4:109588516-109588744(+)$1	1	58	62	12.0000
....	chr10:71968930-71969147(-)$1	1	140	144	12.0000
.(((	chr1:179965728-179965981(+)$1	1	0	4	12.0000
.(((	chr19:9940540-9940764(+)$1	1	41	45	12.0000
((((	chr6:160201962-160202233(-)$1	1	29	33	12.0000
(((.	chr17:7415437-7415686(+)$1	1	3	7	12.0000
((..	chr1:110128838-110129068(+)$1	1	39	43	12.0000
..((	chr5:81573452-81573684(-)$1	1	23	27	12.0000
.(((	chr7:128398947-128399173(+)$1	1	59	63	12.0000

#PSSM
U : 0.95	u : 0.04	
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
A : 0.93	a : 0.06	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_UTR_m2_run1.nuc.txt

#NT
CCAGCCU	chr20:57600167-57600479(+)$1	312	147	154	14.0158
CCAGCCC	chr17:40265917-40266159(-)$1	242	35	42	17.4285
CCAGCCC	chr17:38175442-38175699(-)$1	257	189	196	17.4285
CCAGCAC	chr17:46058428-46058668(+)$1	240	72	79	13.4603
CCAGCCC	chr19:3053641-3053889(-)$1	248	216	223	17.4285
CCUGCCC	chr3:9876792-9877046(+)$1	254	133	140	14.4126
CCAGCCC	chr17:80014270-80014524(+)$1	254	59	66	17.4285
CCAGCAC	chr11:71212300-71212543(+)$1	243	137	144	13.4603
CCUGCCC	chr1:1248331-1248560(-)$1	229	45	52	14.4126
CCAGCCU	chr22:50684304-50684620(-)$1	316	158	165	14.0158
ACAGCCC	chr9:117062817-117063067(+)$1	250	62	69	13.4603
GCAGCCC	chr14:24613300-24613506(-)$1	206	172	179	13.7777
GCAGCCC	chr11:65308970-65309289(-)$1	319	35	42	13.7777
CCUGCCC	chr16:242823-243088(-)$1	265	252	259	14.4126
CCAGCCA	chr11:68382277-68382559(+)$1	282	103	110	13.6190
CCUGCCC	chr1:40766390-40766625(-)$1	235	145	152	14.4126
CCAGCCC	chr1:36769480-36769752(+)$1	272	22	29	17.4285
CCAGCCU	chr8:145699122-145699394(+)$1	272	158	165	14.0158
CCAGCGC	chr3:184102774-184103107(+)$1	333	27	34	13.3809
CCAGCUC	chr19:15491226-15491462(-)$1	236	14	21	13.3015
CCAGCGC	chr1:43213292-43213557(-)$1	265	84	91	13.3809
CCAGCAC	chr16:89809189-89809445(-)$1	256	124	131	13.4603
GCAGCCC	chr19:12811667-12811934(-)$1	267	137	144	13.7777
CCAGCCA	chr22:29907028-29907387(-)$1	359	154	161	13.6190
UCAGCCC	chr3:184100565-184100789(+)$1	224	152	159	13.5396
CCAGCCA	chr16:70514595-70514898(-)$1	303	43	50	13.6190
CCUGCCC	chr19:50165686-50165958(-)$1	272	172	179	14.4126
CCUGCCC	chr9:116997780-116997987(+)$1	207	178	185	14.4126
CCAGCUC	chr16:88718424-88718696(-)$1	272	63	70	13.3015
CCAGCGC	chr11:65306452-65306734(-)$1	282	57	64	13.3809
ACAGCCC	chr11:799225-799512(-)$1	287	178	185	13.4603
CCAGCCC	chr1:22149554-22149819(-)$1	265	48	55	17.4285
CCAGCCU	chr22:22051744-22052018(+)$1	274	233	240	14.0158
CCAGCAC	chr17:7128301-7128534(+)$1	233	218	225	13.4603
CCAGCCC	chr5:176951270-176951535(-)$1	265	4	11	17.4285
CCAGCCC	chr6:32150264-32150546(-)$1	282	168	175	17.4285
ccagccc	chr19:17935602-17935922(-)$1	320	183	190	17.4285
GCAGCCC	chr20:39804061-39804335(+)$1	274	113	120	13.7777
UCAGCCC	chr19:7709988-7710224(+)$1	236	17	24	13.5396
GCAGCCC	chr3:48445771-48446001(-)$1	230	152	159	13.7777
CCAGCCG	chr17:7128027-7128231(+)$1	204	58	65	13.4603
CCAGCCC	chr7:100218122-100218400(-)$1	278	96	103	17.4285
CCUGCCC	chr19:50386015-50386250(+)$1	235	193	200	14.4126
GCAGCCC	chr20:60884301-60884545(-)$1	244	27	34	13.7777
CCAGCCC	chr17:79865329-79865549(-)$1	220	206	213	17.4285
CCUGCCC	chr16:2137955-2138210(+)$1	255	145	152	14.4126
ccagccu	chr20:61599389-61599639(+)$1	250	53	60	14.0158
ccagccu	chr16:84156118-84156432(-)$1	314	260	267	14.0158
CCUGCCC	chr20:39988568-39988880(+)$1	312	63	70	14.4126
CCAGCCC	chr17:79966811-79967030(+)$1	219	58	65	17.4285
ccagccu	chr2:202031947-202032257(+)$1	310	81	88	14.0158
CCUGCCC	chr8:21939703-21939971(+)$1	268	146	153	14.4126
CCAGCCC	chr20:44978926-44979180(-)$1	254	53	60	17.4285
CCAGCCC	chr3:127790100-127790337(+)$1	237	135	142	17.4285
CCAGCCC	chr20:60884749-60884980(-)$1	231	178	185	17.4285
CCUGCCC	chr3:184102362-184102582(+)$1	220	84	91	14.4126
CCUGCCC	chr9:116997823-116998032(+)$1	209	135	142	14.4126
CCGGCCC	chr19:46319253-46319537(-)$1	284	123	130	13.5396
UCAGCCC	chr1:154934861-154935100(-)$1	239	76	83	13.5396
CCAGCCC	chr3:127789972-127790273(+)$1	301	263	270	17.4285
CCAGCCC	chr17:79954484-79954738(+)$1	254	125	132	17.4285
CCAGCCU	chr22:51010538-51010812(-)$1	274	230	237	14.0158

#otherMatches

#Struct PSSM
::DDDDY	chr19:50046611-50046906(+)$1	295	97	104	17.4285
cccc666	chr20:57600167-57600479(+)$1	312	147	154	14.0158
mffffff	chr17:40265917-40266159(-)$1	242	35	42	17.4285
]ccc]dd	chr17:38175442-38175699(-)$1	257	189	196	17.4285
dddffff	chr17:46058428-46058668(+)$1	240	72	79	13.4603
mmmdddd	chr19:3053641-3053889(-)$1	248	216	223	17.4285
ca[ccc[	chr3:9876792-9877046(+)$1	254	133	140	14.4126
FFFFFFL	chr17:80014270-80014524(+)$1	254	59	66	17.4285
ffffffx	chr11:71212300-71212543(+)$1	243	137	144	13.4603
eeeemmm	chr1:1248331-1248560(-)$1	229	45	52	14.4126
eeeee[a	chr22:50684304-50684620(-)$1	316	158	165	14.0158
]eeeeeb	chr9:117062817-117063067(+)$1	250	62	69	13.4603
:::::gg	chr14:24613300-24613506(-)$1	206	172	179	13.7777
ddddeee	chr11:65308970-65309289(-)$1	319	35	42	13.7777
22eeeee	chr16:242823-243088(-)$1	265	252	259	14.4126
eeeeCCC	chr11:68382277-68382559(+)$1	282	103	110	13.6190
33fffff	chr1:40766390-40766625(-)$1	235	145	152	14.4126
:::dddd	chr1:36769480-36769752(+)$1	272	22	29	17.4285
=======	chr8:145699122-145699394(+)$1	272	158	165	14.0158
HHHHHHH	chr3:184102774-184103107(+)$1	333	27	34	13.3809
gggggg[	chr19:15491226-15491462(-)$1	236	14	21	13.3015
ii::ggg	chr1:43213292-43213557(-)$1	265	84	91	13.3809
dddd"""	chr16:89809189-89809445(-)$1	256	124	131	13.4603
22fffff	chr19:12811667-12811934(-)$1	267	137	144	13.7777
ssseeee	chr22:29907028-29907387(-)$1	359	154	161	13.6190
dd:DDDD	chr3:184100565-184100789(+)$1	224	152	159	13.5396
333a]dd	chr16:70514595-70514898(-)$1	303	43	50	13.6190
ppppppe	chr19:50165686-50165958(-)$1	272	172	179	14.4126
DDDDAAD	chr9:116997780-116997987(+)$1	207	178	185	14.4126
333ffff	chr16:88718424-88718696(-)$1	272	63	70	13.3015
lddddff	chr11:65306452-65306734(-)$1	282	57	64	13.3809
mmdddd:	chr11:799225-799512(-)$1	287	178	185	13.4603
HHHHHHH	chr1:22149554-22149819(-)$1	265	48	55	17.4285
ssssssf	chr22:22051744-22052018(+)$1	274	233	240	14.0158
llggggg	chr17:7128301-7128534(+)$1	233	218	225	13.4603
C::::HH	chr5:176951270-176951535(-)$1	265	4	11	17.4285
hhhhhhh	chr6:32150264-32150546(-)$1	282	168	175	17.4285
hhhhhhh	chr19:17935602-17935922(-)$1	320	183	190	17.4285
b!!eeee	chr20:39804061-39804335(+)$1	274	113	120	13.7777
[ccc^^^	chr19:7709988-7710224(+)$1	236	17	24	13.5396
cc333ee	chr3:48445771-48446001(-)$1	230	152	159	13.7777
ppppbbg	chr17:7128027-7128231(+)$1	204	58	65	13.4603
::dddd!	chr7:100218122-100218400(-)$1	278	96	103	17.4285
GGGGGFF	chr19:50386015-50386250(+)$1	235	193	200	14.4126
iiiiii!	chr20:60884301-60884545(-)$1	244	27	34	13.7777
EEE}III	chr17:79865329-79865549(-)$1	220	206	213	17.4285
333====	chr16:2137955-2138210(+)$1	255	145	152	14.4126
333bb::	chr20:61599389-61599639(+)$1	250	53	60	14.0158
cc22fff	chr16:84156118-84156432(-)$1	314	260	267	14.0158
DDDDDDh	chr20:39988568-39988880(+)$1	312	63	70	14.4126
llldddd	chr17:79966811-79967030(+)$1	219	58	65	17.4285
ddd!!bb	chr2:202031947-202032257(+)$1	310	81	88	14.0158
555ffff	chr8:21939703-21939971(+)$1	268	146	153	14.4126
hhhhhhh	chr20:44978926-44979180(-)$1	254	53	60	17.4285
ee[ffff	chr3:127790100-127790337(+)$1	237	135	142	17.4285
GGGGGG}	chr20:60884749-60884980(-)$1	231	178	185	17.4285
eeeeeee	chr3:184102362-184102582(+)$1	220	84	91	14.4126
:::bbmm	chr9:116997823-116998032(+)$1	209	135	142	14.4126
!!bbqqq	chr19:46319253-46319537(-)$1	284	123	130	13.5396
ooooooa	chr1:154934861-154935100(-)$1	239	76	83	13.5396
77dddd:	chr3:127789972-127790273(+)$1	301	263	270	17.4285
DD{BBDD	chr17:79954484-79954738(+)$1	254	125	132	17.4285
hssssss	chr22:51010538-51010812(-)$1	274	230	237	14.0158

#DB
..)))).	chr19:50046611-50046906(+)$1	1	97	104	17.4285
))))...	chr20:57600167-57600479(+)$1	1	147	154	14.0158
.))))))	chr17:40265917-40266159(-)$1	1	35	42	17.4285
.))).))	chr17:38175442-38175699(-)$1	1	189	196	17.4285
)))((((	chr17:46058428-46058668(+)$1	1	72	79	13.4603
...))))	chr19:3053641-3053889(-)$1	1	216	223	17.4285
((.(((.	chr3:9876792-9877046(+)$1	1	133	140	14.4126
((((((.	chr17:80014270-80014524(+)$1	1	59	66	17.4285
((((((.	chr11:71212300-71212543(+)$1	1	137	144	13.4603
((((...	chr1:1248331-1248560(-)$1	1	45	52	14.4126
(((((.(	chr22:50684304-50684620(-)$1	1	158	165	14.0158
.))))))	chr9:117062817-117063067(+)$1	1	62	69	13.4603
.....((	chr14:24613300-24613506(-)$1	1	172	179	13.7777
(((((((	chr11:65308970-65309289(-)$1	1	35	42	13.7777
..)))))	chr16:242823-243088(-)$1	1	252	259	14.4126
)))))))	chr11:68382277-68382559(+)$1	1	103	110	13.6190
..)))))	chr1:40766390-40766625(-)$1	1	145	152	14.4126
...((((	chr1:36769480-36769752(+)$1	1	22	29	17.4285
)))))))	chr8:145699122-145699394(+)$1	1	158	165	14.0158
(((((((	chr3:184102774-184103107(+)$1	1	27	34	13.3809
((((((.	chr19:15491226-15491462(-)$1	1	14	21	13.3015
))..(((	chr1:43213292-43213557(-)$1	1	84	91	13.3809
((((...	chr16:89809189-89809445(-)$1	1	124	131	13.4603
..)))))	chr19:12811667-12811934(-)$1	1	137	144	13.7777
...))))	chr22:29907028-29907387(-)$1	1	154	161	13.6190
)).))))	chr3:184100565-184100789(+)$1	1	152	159	13.5396
...).))	chr16:70514595-70514898(-)$1	1	43	50	13.6190
......)	chr19:50165686-50165958(-)$1	1	172	179	14.4126
)))))))	chr9:116997780-116997987(+)$1	1	178	185	14.4126
...))))	chr16:88718424-88718696(-)$1	1	63	70	13.3015
.))))((	chr11:65306452-65306734(-)$1	1	57	64	13.3809
..)))).	chr11:799225-799512(-)$1	1	178	185	13.4603
(((((((	chr1:22149554-22149819(-)$1	1	48	55	17.4285
......)	chr22:22051744-22052018(+)$1	1	233	240	14.0158
..)))))	chr17:7128301-7128534(+)$1	1	218	225	13.4603
(....((	chr5:176951270-176951535(-)$1	1	4	11	17.4285
(((((((	chr6:32150264-32150546(-)$1	1	168	175	17.4285
(((((((	chr19:17935602-17935922(-)$1	1	183	190	17.4285
(..((((	chr20:39804061-39804335(+)$1	1	113	120	13.7777
.(((...	chr19:7709988-7710224(+)$1	1	17	24	13.5396
))...))	chr3:48445771-48446001(-)$1	1	152	159	13.7777
....)))	chr17:7128027-7128231(+)$1	1	58	65	13.4603
..((((.	chr7:100218122-100218400(-)$1	1	96	103	17.4285
)))))))	chr19:50386015-50386250(+)$1	1	193	200	14.4126
((((((.	chr20:60884301-60884545(-)$1	1	27	34	13.7777
))).)))	chr17:79865329-79865549(-)$1	1	206	213	17.4285
...))))	chr16:2137955-2138210(+)$1	1	145	152	14.4126
...))..	chr20:61599389-61599639(+)$1	1	53	60	14.0158
))..)))	chr16:84156118-84156432(-)$1	1	260	267	14.0158
(((((((	chr20:39988568-39988880(+)$1	1	63	70	14.4126
...))))	chr17:79966811-79967030(+)$1	1	58	65	17.4285
(((..((	chr2:202031947-202032257(+)$1	1	81	88	14.0158
...))))	chr8:21939703-21939971(+)$1	1	146	153	14.4126
)))))))	chr20:44978926-44979180(-)$1	1	53	60	17.4285
((.((((	chr3:127790100-127790337(+)$1	1	135	142	17.4285
)))))).	chr20:60884749-60884980(-)$1	1	178	185	17.4285
))(((((	chr3:184102362-184102582(+)$1	1	84	91	14.4126
...((..	chr9:116997823-116998032(+)$1	1	135	142	14.4126
..((...	chr19:46319253-46319537(-)$1	1	123	130	13.5396
......)	chr1:154934861-154935100(-)$1	1	76	83	13.5396
..)))).	chr3:127789972-127790273(+)$1	1	263	270	17.4285
((.((((	chr17:79954484-79954738(+)$1	1	125	132	17.4285
(......	chr22:51010538-51010812(-)$1	1	230	237	14.0158

#PSSM
C : 0.76	G : 0.09	c : 0.06	U : 0.04	A : 0.03	
C : 0.93	c : 0.06	
A : 0.73	U : 0.19	a : 0.06	G : 0.01	
G : 0.93	g : 0.06	
C : 0.93	c : 0.06	
C : 0.79	A : 0.06	c : 0.06	G : 0.04	U : 0.03	
C : 0.79	U : 0.07	A : 0.04	u : 0.04	c : 0.01	G : 0.01	

#score	937.4444444444438
#seq	63
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_transcript_m2_run2.nuc.txt

#NT
gugugagugugugu	chr17:70549366-70549614(-)$1	248	8	22	31.6031
gugugugugagugu	chr2:241900610-241900878(-)$1	268	109	123	31.5238
GUGAGUGUGUGAGU	chr1:109642775-109642980(+)$1	205	134	148	28.6666
gugugagugugugA	chr2:241900512-241900766(-)$1	254	1	15	27.5555
gugugugugugugu	chr17:7079061-7079298(-)$1	237	181	195	35.4920
GUGAGUGUGUGAGU	chr1:109642846-109643053(+)$1	207	63	77	28.6666
cuguguguaugugu	chr16:89370951-89371194(-)$1	243	99	113	26.7619
guuugugugugugu	chr6:349144-349423(+)$1	279	189	203	30.7301
GGGGGUGUGUGUGU	chr19:47732050-47732297(-)$1	247	31	45	27.4761
cugugugugugugu	chr21:44269074-44269296(-)$1	222	77	91	31.2857
GUGUGUAUGCGUGU	chr3:30653774-30654065(+)$1	291	102	116	27.2380
gggugugugugugu	chr17:79964163-79964390(+)$1	227	11	25	31.6031
GAGUGUGAGUGUGU	chr1:44058765-44059033(+)$1	268	166	180	26.9206
gugugugcaugugu	chr4:881341-881612(-)$1	271	88	102	26.9206
gugugugugcgugu	chr14:103571655-103571897(+)$1	242	9	23	31.5238
GUGUGUGGGUGUGA	chr7:47391317-47391597(-)$1	280	28	42	27.0793
gcgugagugugugu	chr17:7016444-7016717(-)$1	273	55	69	27.5555
gugugugugugugu	chr14:39554916-39555182(-)$1	266	249	263	35.4920
gggugugugugugu	chr17:70553388-70553658(-)$1	270	11	25	31.6031
gugugugugugugc	chr12:133112569-133112834(+)$1	265	107	121	31.6031
GCGUGUGUGUGUGG	chr10:103590366-103590639(-)$1	273	32	46	27.2380
GUGUGGGUGUGAGU	chr7:158133865-158134119(-)$1	254	41	55	28.1111
gugugugugagugc	chr12:133112777-133113045(+)$1	268	12	26	27.6349
GUGAGUGUGUGAGU	chr1:109642784-109642994(+)$1	210	125	139	28.6666
gugugugcgugugu	chr20:62363597-62363899(+)$1	302	156	170	31.4444
cugugugugugugu	chr21:44269154-44269398(-)$1	244	179	193	31.2857
cugugugugugugu	chr21:44269047-44269274(-)$1	227	55	69	31.2857
gugugugugugugu	chr16:89980847-89981104(+)$1	257	161	175	35.4920
GUGAGUGUGUGAGU	chr1:109642812-109643021(+)$1	209	97	111	28.6666
gugugugugugugu	chr5:176517135-176517373(+)$1	238	1	15	35.4920
gugagugugagugu	chr7:47391784-47392083(-)$1	299	108	122	27.9523
gugugaguguguga	chr16:1789320-1789567(+)$1	247	180	194	27.5555
GUGAGUGUGUGAGU	chr1:109642794-109643001(+)$1	207	115	129	28.6666
gggugugugugugu	chr17:79964082-79964335(+)$1	253	92	106	31.6031
gugugugugugugc	chr17:79963935-79964193(+)$1	258	120	134	31.6031
GUGAGUGUGUGAGU	chr1:109642837-109643041(+)$1	204	72	86	28.6666
gugugugcaugugu	chr1:1276181-1276443(-)$1	262	245	259	26.9206
gugugaaugugugu	chr2:236420628-236420913(+)$1	285	40	54	27.3174
GUGUGGGUGUGAGU	chr7:158127185-158127411(-)$1	226	31	45	28.1111
gugugugugucugc	chr7:157612851-157613123(-)$1	272	159	173	26.8412
GUGUGUGUGGGUGU	chr7:158261333-158261635(-)$1	302	57	71	31.2857
gugugugugugugu	chr10:103590448-103590730(-)$1	282	263	277	35.4920
gugugugugagagu	chr2:36777063-36777351(+)$1	288	102	116	28.2698
cugugugugugugu	chr21:44269123-44269354(-)$1	231	135	149	31.2857
gugugugugugugu	chr12:56991292-56991567(-)$1	275	163	177	35.4920
gggcgugugugugu	chr17:79963810-79964066(+)$1	256	164	178	27.4761
gugugugugugugu	chr5:176516875-176517128(+)$1	253	93	107	35.4920
gugugugugcgugu	chr17:70549740-70550056(-)$1	316	119	133	31.5238
gcgugugugugugu	chr7:158157508-158157810(-)$1	302	122	136	31.4444
gugugugcgugugu	chr2:241901052-241901331(-)$1	279	51	65	31.4444
guguguaugugugu	chr20:43030786-43031111(+)$1	325	95	109	31.2063
gucugugugugugc	chr17:7010654-7010914(-)$1	260	9	23	26.8412
gugugcaugugugu	chr7:158322524-158322781(-)$1	257	151	165	27.0793
gugugugugugugu	chr14:103571697-103571956(+)$1	259	1	15	35.4920
GUGAGUGUGUGAGU	chr1:109642879-109643094(+)$1	215	30	44	28.6666
gugugugugugugu	chr2:135208253-135208536(+)$1	283	135	149	35.4920
gugugccugugugu	chr16:89370611-89370876(-)$1	265	25	39	26.8412
gugugugugcgugu	chr20:43033361-43033624(+)$1	263	208	222	31.5238
gugugugugugugu	chr1:245026473-245026719(-)$1	246	0	14	35.4920
Gugugugugugcgu	chr9:136780914-136781196(-)$1	282	218	232	31.5238
guguguguguaugu	chr17:70550221-70550488(-)$1	267	202	216	30.7301
gugugugcgugggu	chr22:51149538-51149786(+)$1	248	142	156	27.4761

#otherMatches

#Struct PSSM
}CCC::::::dddd	chr5:176516793-176517026(+)$1	233	175	189	35.4920
ooooooffffff:C	chr17:70549366-70549614(-)$1	248	8	22	31.6031
hhhhhhhhgggggg	chr2:241900610-241900878(-)$1	268	109	123	31.5238
::::::::ccc[==	chr1:109642775-109642980(+)$1	205	134	148	28.6666
CCC{DDDD{DDDDD	chr2:241900512-241900766(-)$1	254	1	15	27.5555
cc]a::::::::::	chr17:7079061-7079298(-)$1	237	181	195	35.4920
::::::::ccc[==	chr1:109642846-109643053(+)$1	207	63	77	28.6666
bb]bb]dddd::dd	chr16:89370951-89371194(-)$1	243	99	113	26.7619
mmhhhhhhhh::::	chr6:349144-349423(+)$1	279	189	203	30.7301
b[a[attttttttt	chr19:47732050-47732297(-)$1	247	31	45	27.4761
errrrrrrrreeee	chr21:44269074-44269296(-)$1	222	77	91	31.2857
ddd[eeeee[dddd	chr3:30653774-30654065(+)$1	291	102	116	27.2380
GG============	chr17:79964163-79964390(+)$1	227	11	25	31.6031
dddd::::eeeeem	chr1:44058765-44059033(+)$1	268	166	180	26.9206
========mmmm==	chr4:881341-881612(-)$1	271	88	102	26.9206
[cccvvvvvvvvvv	chr14:103571655-103571897(+)$1	242	9	23	31.5238
####ggggggg[cc	chr7:47391317-47391597(-)$1	280	28	42	27.0793
gggggg::::::::	chr17:7016444-7016717(-)$1	273	55	69	27.5555
=DDDD}DDDD}DDD	chr14:39554916-39555182(-)$1	266	249	263	35.4920
dddd[ccc[ccc!!	chr17:70553388-70553658(-)$1	270	11	25	31.6031
333ccc22======	chr12:133112569-133112834(+)$1	265	107	121	31.6031
cccooooooccc]b	chr10:103590366-103590639(-)$1	273	32	46	27.2380
HH:::::::::a[a	chr7:158133865-158134119(-)$1	254	41	55	28.1111
eeeee:::::JJJJ	chr12:133112777-133113045(+)$1	268	12	26	27.6349
::::::::ccc[==	chr1:109642784-109642994(+)$1	210	125	139	28.6666
::::::dddd[a[a	chr20:62363597-62363899(+)$1	302	156	170	31.4444
errrrrrrrreeee	chr21:44269154-44269398(-)$1	244	179	193	31.2857
d]ffffff::::::	chr21:44269047-44269274(-)$1	227	55	69	31.2857
uuuuuuuuuuhhhh	chr16:89980847-89981104(+)$1	257	161	175	35.4920
::::::::ccc[==	chr1:109642812-109643021(+)$1	209	97	111	28.6666
{EEEEEFFFFFFcc	chr5:176517135-176517373(+)$1	238	1	15	35.4920
dd[ccc[a[ccc[a	chr7:47391784-47392083(-)$1	299	108	122	27.9523
iiiii]ccc]bb]b	chr16:1789320-1789567(+)$1	247	180	194	27.5555
::::::::ccc[==	chr1:109642794-109643001(+)$1	207	115	129	28.6666
EEEE::::hhhhhh	chr17:79964082-79964335(+)$1	253	92	106	31.6031
bb[===========	chr17:79963935-79964193(+)$1	258	120	134	31.6031
::::::::ccc[==	chr1:109642837-109643041(+)$1	204	72	86	28.6666
]a]===========	chr1:1276181-1276443(-)$1	262	245	259	26.9206
GGGGCCC{CCC{DD	chr2:236420628-236420913(+)$1	285	40	54	27.3174
hh+++++++++++=	chr7:158127185-158127411(-)$1	226	31	45	28.1111
====="""ffffff	chr7:157612851-157613123(-)$1	272	159	173	26.8412
======qqqqqqqq	chr7:158261333-158261635(-)$1	302	57	71	31.2857
FFFF::::::::::	chr10:103590448-103590730(-)$1	282	263	277	35.4920
]eeeee22ffffff	chr2:36777063-36777351(+)$1	288	102	116	28.2698
errrrrrrrreeee	chr21:44269123-44269354(-)$1	231	135	149	31.2857
c]bb]a]ccc]a22	chr12:56991292-56991567(-)$1	275	163	177	35.4920
f[============	chr17:79963810-79964066(+)$1	256	164	178	27.4761
:::::::::JJJJJ	chr5:176516875-176517128(+)$1	253	93	107	35.4920
=oooooo=======	chr17:70549740-70550056(-)$1	316	119	133	31.5238
========22ccc:	chr7:158157508-158157810(-)$1	302	122	136	31.4444
vvvvvvffffff22	chr2:241901052-241901331(-)$1	279	51	65	31.4444
ffggggggg"""bb	chr20:43030786-43031111(+)$1	325	95	109	31.2063
::::::DDDDLLLE	chr17:7010654-7010914(-)$1	260	9	23	26.8412
==========qqqq	chr7:158322524-158322781(-)$1	257	151	165	27.0793
::::::::::::::	chr14:103571697-103571956(+)$1	259	1	15	35.4920
dd[bb[a[ccc[==	chr1:109642879-109643094(+)$1	215	30	44	28.6666
::::::::::ffff	chr2:135208253-135208536(+)$1	283	135	149	35.4920
DDDDKKDDDDA{DD	chr16:89370611-89370876(-)$1	265	25	39	26.8412
cc::::::IIIIII	chr20:43033361-43033624(+)$1	263	208	222	31.5238
::::::::::::::	chr1:245026473-245026719(-)$1	246	0	14	35.4920
b:::::ggggggg#	chr9:136780914-136781196(-)$1	282	218	232	31.5238
]a7777777=====	chr17:70550221-70550488(-)$1	267	202	216	30.7301
======4444dddd	chr22:51149538-51149786(+)$1	248	142	156	27.4761

#DB
.)))......((((	chr5:176516793-176517026(+)$1	1	175	189	35.4920
......)))))).(	chr17:70549366-70549614(-)$1	1	8	22	31.6031
((((((((((((((	chr2:241900610-241900878(-)$1	1	109	123	31.5238
........(((.((	chr1:109642775-109642980(+)$1	1	134	148	28.6666
(((.((((.(((((	chr2:241900512-241900766(-)$1	1	1	15	27.5555
)).)..........	chr17:7079061-7079298(-)$1	1	181	195	35.4920
........(((.((	chr1:109642846-109643053(+)$1	1	63	77	28.6666
)).)).))))..((	chr16:89370951-89371194(-)$1	1	99	113	26.7619
..))))))))....	chr6:349144-349423(+)$1	1	189	203	30.7301
(.(.(.........	chr19:47732050-47732297(-)$1	1	31	45	27.4761
(.........))))	chr21:44269074-44269296(-)$1	1	77	91	31.2857
(((.(((((.((((	chr3:30653774-30654065(+)$1	1	102	116	27.2380
((((((((((((((	chr17:79964163-79964390(+)$1	1	11	25	31.6031
))))....(((((.	chr1:44058765-44059033(+)$1	1	166	180	26.9206
((((((((....))	chr4:881341-881612(-)$1	1	88	102	26.9206
.(((..........	chr14:103571655-103571897(+)$1	1	9	23	31.5238
....(((((((.((	chr7:47391317-47391597(-)$1	1	28	42	27.0793
))))))........	chr17:7016444-7016717(-)$1	1	55	69	27.5555
))))).)))).)))	chr14:39554916-39555182(-)$1	1	249	263	35.4920
((((.(((.(((..	chr17:70553388-70553658(-)$1	1	11	25	31.6031
...)))..))))))	chr12:133112569-133112834(+)$1	1	107	121	31.6031
(((......))).)	chr10:103590366-103590639(-)$1	1	32	46	27.2380
((.........(.(	chr7:158133865-158134119(-)$1	1	41	55	28.1111
))))).....((((	chr12:133112777-133113045(+)$1	1	12	26	27.6349
........(((.((	chr1:109642784-109642994(+)$1	1	125	139	28.6666
......((((.(.(	chr20:62363597-62363899(+)$1	1	156	170	31.4444
(.........))))	chr21:44269154-44269398(-)$1	1	179	193	31.2857
).))))))......	chr21:44269047-44269274(-)$1	1	55	69	31.2857
..........))))	chr16:89980847-89981104(+)$1	1	161	175	35.4920
........(((.((	chr1:109642812-109643021(+)$1	1	97	111	28.6666
.(((((((((((((	chr5:176517135-176517373(+)$1	1	1	15	35.4920
((.(((.(.(((.(	chr7:47391784-47392083(-)$1	1	108	122	27.9523
))))).))).)).)	chr16:1789320-1789567(+)$1	1	180	194	27.5555
........(((.((	chr1:109642794-109643001(+)$1	1	115	129	28.6666
((((....((((((	chr17:79964082-79964335(+)$1	1	92	106	31.6031
((.(((((((((((	chr17:79963935-79964193(+)$1	1	120	134	31.6031
........(((.((	chr1:109642837-109643041(+)$1	1	72	86	28.6666
.).)))))))))))	chr1:1276181-1276443(-)$1	1	245	259	26.9206
(((((((.(((.((	chr2:236420628-236420913(+)$1	1	40	54	27.3174
((...........(	chr7:158127185-158127411(-)$1	1	31	45	28.1111
(((((...((((((	chr7:157612851-157613123(-)$1	1	159	173	26.8412
((((((........	chr7:158261333-158261635(-)$1	1	57	71	31.2857
))))..........	chr10:103590448-103590730(-)$1	1	263	277	35.4920
.)))))..))))))	chr2:36777063-36777351(+)$1	1	102	116	28.2698
(.........))))	chr21:44269123-44269354(-)$1	1	135	149	31.2857
).)).).))).)..	chr12:56991292-56991567(-)$1	1	163	177	35.4920
(.((((((((((((	chr17:79963810-79964066(+)$1	1	164	178	27.4761
.........)))))	chr5:176516875-176517128(+)$1	1	93	107	35.4920
(......)))))))	chr17:70549740-70550056(-)$1	1	119	133	31.5238
))))))))..))).	chr7:158157508-158157810(-)$1	1	122	136	31.4444
......))))))..	chr2:241901052-241901331(-)$1	1	51	65	31.4444
))(((((((...((	chr20:43030786-43031111(+)$1	1	95	109	31.2063
......((((...(	chr17:7010654-7010914(-)$1	1	9	23	26.8412
((((((((((....	chr7:158322524-158322781(-)$1	1	151	165	27.0793
..............	chr14:103571697-103571956(+)$1	1	1	15	35.4920
((.((.(.(((.((	chr1:109642879-109643094(+)$1	1	30	44	28.6666
..........((((	chr2:135208253-135208536(+)$1	1	135	149	35.4920
((((..(((((.((	chr16:89370611-89370876(-)$1	1	25	39	26.8412
))......))))))	chr20:43033361-43033624(+)$1	1	208	222	31.5238
..............	chr1:245026473-245026719(-)$1	1	0	14	35.4920
).....(((((((.	chr9:136780914-136781196(-)$1	1	218	232	31.5238
.).......)))))	chr17:70550221-70550488(-)$1	1	202	216	30.7301
))))))....))))	chr22:51149538-51149786(+)$1	1	142	156	27.4761

#PSSM
g : 0.66	G : 0.25	c : 0.07	
u : 0.66	U : 0.19	g : 0.06	c : 0.03	G : 0.01	A : 0.01	C : 0.01	
g : 0.73	G : 0.23	u : 0.01	c : 0.01	
u : 0.73	A : 0.11	U : 0.11	G : 0.01	a : 0.01	c : 0.01	
g : 0.76	G : 0.23	
u : 0.65	U : 0.20	a : 0.07	G : 0.03	c : 0.03	
g : 0.69	G : 0.22	a : 0.04	A : 0.01	c : 0.01	
u : 0.68	U : 0.20	c : 0.07	A : 0.01	G : 0.01	
g : 0.71	G : 0.23	a : 0.04	
u : 0.65	U : 0.20	a : 0.06	c : 0.04	C : 0.01	G : 0.01	
g : 0.73	G : 0.23	c : 0.01	a : 0.01	
u : 0.71	A : 0.14	U : 0.09	a : 0.01	c : 0.01	g : 0.01	
g : 0.76	G : 0.23	
u : 0.65	U : 0.20	c : 0.07	A : 0.03	G : 0.01	a : 0.01	

#score	1910.920634920633
#seq	63
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_transcript_m2_run1.nuc.txt

#NT
GUUGCAGG	chr19:24187192-24187410(-)$1	218	171	179	15.5454
GCUGCCGG	chr7:45928320-45928592(+)$1	272	188	196	15.9999
CCUGCAGG	chr5:40832667-40832921(-)$1	254	239	247	16.4545
GCUGCAGG	chr19:6694523-6694745(-)$1	222	93	101	19.9090
GCUACAGG	chr1:230846074-230846329(-)$1	255	203	211	15.5454
GCUGCAGG	chr19:45411893-45412148(+)$1	255	1	9	19.9090
GCUGCAGG	chr1:230846387-230846685(-)$1	298	179	187	19.9090
GCUGCAGC	chr8:11705103-11705347(-)$1	244	225	233	15.9090
GCUACAGG	chr20:39800781-39801023(+)$1	242	24	32	15.5454
GAUGCAGG	chr9:128003183-128003426(-)$1	243	158	166	15.4545
GCUGCAGC	chr22:33197740-33197992(+)$1	252	166	174	15.9090
GCUGCCGG	chr14:101200761-101201013(+)$1	252	141	149	15.9999
GCUGCAGG	chr20:60890016-60890269(-)$1	253	85	93	19.9090
GCGGCAGG	chr10:95353498-95353742(-)$1	244	110	118	15.3636
GCUGCAGG	chr16:18480409-18480791(-)$1	382	112	120	19.9090
CCUGCAGG	chr1:19454029-19454320(-)$1	291	80	88	16.4545
GCCGCAGG	chr20:61463405-61463629(+)$1	224	112	120	15.2727
GCUGCAGG	chr7:100285330-100285608(-)$1	278	113	121	19.9090
GCUGCAAG	chr12:6619566-6619809(+)$1	243	148	156	15.1818
GCUCCAGG	chr20:17608143-17608393(-)$1	250	142	150	15.6363
GCUGCAGC	chr6:167369764-167370029(-)$1	265	28	36	15.9090
GCUGCAGG	chr13:114843558-114843785(-)$1	227	120	128	19.9090
GGUGCAGG	chr6:167369869-167370109(-)$1	240	41	49	15.5454
ACUGCAGG	chr16:2164068-2164313(-)$1	245	124	132	15.9999
GCUGCAGC	chr20:61471852-61472059(+)$1	207	5	13	15.9090
CCUGCAGG	chr11:75279995-75280319(+)$1	324	214	222	16.4545
GCUGCUGG	chr3:186338492-186338722(+)$1	230	170	178	16.2727
GCUGGAGG	chr20:61460184-61460424(+)$1	240	22	30	15.5454
GCUGCUGG	chr2:97482331-97482584(+)$1	253	27	35	16.2727
UCUGCAGG	chr9:117027601-117027841(+)$1	240	93	101	15.9090
GCUGCACG	chr11:116706840-116707086(-)$1	246	229	237	15.1818
GCUGCAGC	chr1:11986199-11986445(-)$1	246	156	164	15.9090
GCUGCGGG	chr17:79812989-79813207(-)$1	218	9	17	16.0909
GUUGCAGG	chr9:117005724-117005941(+)$1	217	55	63	15.5454
GCUGAAGG	chr4:1808226-1808479(+)$1	253	133	141	15.3636
CCUGCAGG	chr9:117062261-117062503(+)$1	242	81	89	16.4545
GCUGCAgg	chr1:236228069-236228338(-)$1	269	214	222	19.9090
GCUGCGGG	chr17:79813007-79813226(-)$1	219	28	36	16.0909
CCUGCAGG	chr9:117052428-117052708(+)$1	280	77	85	16.4545
CCUGCAGG	chr21:46897630-46897891(+)$1	261	156	164	16.4545
ACUGCAGG	chr20:17602083-17602290(-)$1	207	142	150	15.9999
GCGGCAGG	chr10:95353489-95353694(-)$1	205	62	70	15.3636
GCUGCGGG	chr2:220435304-220435574(-)$1	270	36	44	16.0909
GCUGCAGG	chr1:990102-990325(+)$1	223	94	102	19.9090
GCUGGAGG	chr21:46896254-46896489(+)$1	235	67	75	15.5454
GCUGCUGG	chr1:11994685-11994925(+)$1	240	189	197	16.2727
GGUGCAGG	chr21:46910092-46910343(+)$1	251	191	199	15.5454
gCUGCUGG	chr9:116823733-116823969(-)$1	236	75	83	16.2727
GCUGCAGU	chr17:76968289-76968551(-)$1	262	209	217	15.5454
GCUCCAGG	chr16:16414907-16415189(+)$1	282	41	49	15.6363
GCUGCAGG	chr9:117027267-117027490(+)$1	223	9	17	19.9090
GCUGCUGG	chr20:31596252-31596465(+)$1	213	154	162	16.2727
CCUGCAGG	chr12:57592162-57592420(+)$1	258	21	29	16.4545
GCUGGAGG	chr1:985715-985954(+)$1	239	103	111	15.5454

#otherMatches

#Struct PSSM
:hhhhhhh	chr14:23770951-23771156(+)$1	205	94	102	15.6363
========	chr19:24187192-24187410(-)$1	218	171	179	15.5454
ff55555c	chr7:45928320-45928592(+)$1	272	188	196	15.9999
FCCC}DDD	chr5:40832667-40832921(-)$1	254	239	247	16.4545
bb22eeee	chr19:6694523-6694745(-)$1	222	93	101	19.9090
::::dddd	chr1:230846074-230846329(-)$1	255	203	211	15.5454
CCCBB{BB	chr19:45411893-45412148(+)$1	255	1	9	19.9090
FFFFFeee	chr1:230846387-230846685(-)$1	298	179	187	19.9090
ccmmmmcc	chr8:11705103-11705347(-)$1	244	225	233	15.9090
hhhhhhh:	chr20:39800781-39801023(+)$1	242	24	32	15.5454
####bb[a	chr9:128003183-128003426(-)$1	243	158	166	15.4545
dd]eeeee	chr22:33197740-33197992(+)$1	252	166	174	15.9090
eeeeeppp	chr14:101200761-101201013(+)$1	252	141	149	15.9999
#eeeeenn	chr20:60890016-60890269(-)$1	253	85	93	19.9090
JJJJJJJJ	chr10:95353498-95353742(-)$1	244	110	118	15.3636
========	chr16:18480409-18480791(-)$1	382	112	120	19.9090
FFF:::cc	chr1:19454029-19454320(-)$1	291	80	88	16.4545
eee[ccc[	chr20:61463405-61463629(+)$1	224	112	120	15.2727
!ffffff[	chr7:100285330-100285608(-)$1	278	113	121	19.9090
eeeccc33	chr12:6619566-6619809(+)$1	243	148	156	15.1818
ooobb]hh	chr20:17608143-17608393(-)$1	250	142	150	15.6363
iii[dddd	chr6:167369764-167370029(-)$1	265	28	36	15.9090
gg4444cc	chr13:114843558-114843785(-)$1	227	120	128	19.9090
ccc[dddd	chr6:167369869-167370109(-)$1	240	41	49	15.5454
lllccc]b	chr16:2164068-2164313(-)$1	245	124	132	15.9999
dd[a[ccc	chr20:61471852-61472059(+)$1	207	5	13	15.9090
ccc333gg	chr11:75279995-75280319(+)$1	324	214	222	16.4545
d22dddd]	chr3:186338492-186338722(+)$1	230	170	178	16.2727
======oo	chr20:61460184-61460424(+)$1	240	22	30	15.5454
lllddddd	chr2:97482331-97482584(+)$1	253	27	35	16.2727
GGGGGeee	chr9:117027601-117027841(+)$1	240	93	101	15.9090
GGGGGGGY	chr11:116706840-116707086(-)$1	246	229	237	15.1818
fffffmmm	chr1:11986199-11986445(-)$1	246	156	164	15.9090
EEEEEBBK	chr17:79812989-79813207(-)$1	218	9	17	16.0909
dd!!dddd	chr9:117005724-117005941(+)$1	217	55	63	15.5454
ooeeeee:	chr4:1808226-1808479(+)$1	253	133	141	15.3636
pppfffff	chr9:117062261-117062503(+)$1	242	81	89	16.4545
HHH}AYYC	chr1:236228069-236228338(-)$1	269	214	222	19.9090
:::dddda	chr17:79813007-79813226(-)$1	219	28	36	16.0909
ccc"""ff	chr9:117052428-117052708(+)$1	280	77	85	16.4545
~~~EEEEE	chr21:46897630-46897891(+)$1	261	156	164	16.4545
oddddccc	chr20:17602083-17602290(-)$1	207	142	150	15.9999
E::JJJJJ	chr10:95353489-95353694(-)$1	205	62	70	15.3636
::DDDD{A	chr2:220435304-220435574(-)$1	270	36	44	16.0909
[ggggggg	chr1:990102-990325(+)$1	223	94	102	19.9090
ddddmmmm	chr21:46896254-46896489(+)$1	235	67	75	15.5454
mmmggggg	chr1:11994685-11994925(+)$1	240	189	197	16.2727
eeeeeggg	chr21:46910092-46910343(+)$1	251	191	199	15.5454
d]bbccc3	chr9:116823733-116823969(-)$1	236	75	83	16.2727
ccc[dddd	chr17:76968289-76968551(-)$1	262	209	217	15.5454
fffeeeee	chr16:16414907-16415189(+)$1	282	41	49	15.6363
DD{BBKKB	chr9:117027267-117027490(+)$1	223	9	17	19.9090
ffddddcc	chr20:31596252-31596465(+)$1	213	154	162	16.2727
C{FFFFFF	chr12:57592162-57592420(+)$1	258	21	29	16.4545
CCCKKDDD	chr1:985715-985954(+)$1	239	103	111	15.5454

#DB
.(((((((	chr14:23770951-23771156(+)$1	1	94	102	15.6363
((((((((	chr19:24187192-24187410(-)$1	1	171	179	15.5454
)).....)	chr7:45928320-45928592(+)$1	1	188	196	15.9999
)))).)))	chr5:40832667-40832921(-)$1	1	239	247	16.4545
))..))))	chr19:6694523-6694745(-)$1	1	93	101	19.9090
....((((	chr1:230846074-230846329(-)$1	1	203	211	15.5454
(((((.((	chr19:45411893-45412148(+)$1	1	1	9	19.9090
((((((((	chr1:230846387-230846685(-)$1	1	179	187	19.9090
((....))	chr8:11705103-11705347(-)$1	1	225	233	15.9090
))))))).	chr20:39800781-39801023(+)$1	1	24	32	15.5454
....((.(	chr9:128003183-128003426(-)$1	1	158	166	15.4545
)).)))))	chr22:33197740-33197992(+)$1	1	166	174	15.9090
(((((...	chr14:101200761-101201013(+)$1	1	141	149	15.9999
.(((((..	chr20:60890016-60890269(-)$1	1	85	93	19.9090
))))))))	chr10:95353498-95353742(-)$1	1	110	118	15.3636
))))))))	chr16:18480409-18480791(-)$1	1	112	120	19.9090
(((...((	chr1:19454029-19454320(-)$1	1	80	88	16.4545
(((.(((.	chr20:61463405-61463629(+)$1	1	112	120	15.2727
.((((((.	chr7:100285330-100285608(-)$1	1	113	121	19.9090
))))))..	chr12:6619566-6619809(+)$1	1	148	156	15.1818
...)).))	chr20:17608143-17608393(-)$1	1	142	150	15.6363
(((.((((	chr6:167369764-167370029(-)$1	1	28	36	15.9090
))....))	chr13:114843558-114843785(-)$1	1	120	128	19.9090
(((.((((	chr6:167369869-167370109(-)$1	1	41	49	15.5454
...))).)	chr16:2164068-2164313(-)$1	1	124	132	15.9999
((.(.(((	chr20:61471852-61472059(+)$1	1	5	13	15.9090
)))...))	chr11:75279995-75280319(+)$1	1	214	222	16.4545
)..)))).	chr3:186338492-186338722(+)$1	1	170	178	16.2727
((((((..	chr20:61460184-61460424(+)$1	1	22	30	15.5454
...)))))	chr2:97482331-97482584(+)$1	1	27	35	16.2727
)))))(((	chr9:117027601-117027841(+)$1	1	93	101	15.9090
))))))).	chr11:116706840-116707086(-)$1	1	229	237	15.1818
(((((...	chr1:11986199-11986445(-)$1	1	156	164	15.9090
(((((((.	chr17:79812989-79813207(-)$1	1	9	17	16.0909
((..((((	chr9:117005724-117005941(+)$1	1	55	63	15.5454
..))))).	chr4:1808226-1808479(+)$1	1	133	141	15.3636
...)))))	chr9:117062261-117062503(+)$1	1	81	89	16.4545
))).)..)	chr1:236228069-236228338(-)$1	1	214	222	19.9090
...(((((	chr17:79813007-79813226(-)$1	1	28	36	16.0909
(((...((	chr9:117052428-117052708(+)$1	1	77	85	16.4545
...)))))	chr21:46897630-46897891(+)$1	1	156	164	16.4545
.))))(((	chr20:17602083-17602290(-)$1	1	142	150	15.9999
(..(((((	chr10:95353489-95353694(-)$1	1	62	70	15.3636
..((((.(	chr2:220435304-220435574(-)$1	1	36	44	16.0909
.(((((((	chr1:990102-990325(+)$1	1	94	102	19.9090
((((....	chr21:46896254-46896489(+)$1	1	67	75	15.5454
...)))))	chr1:11994685-11994925(+)$1	1	189	197	16.2727
))))))))	chr21:46910092-46910343(+)$1	1	191	199	15.5454
).))))).	chr9:116823733-116823969(-)$1	1	75	83	16.2727
(((.((((	chr17:76968289-76968551(-)$1	1	209	217	15.5454
((((((((	chr16:16414907-16415189(+)$1	1	41	49	15.6363
((.((..(	chr9:117027267-117027490(+)$1	1	9	17	19.9090
))))))))	chr20:31596252-31596465(+)$1	1	154	162	16.2727
(.((((((	chr12:57592162-57592420(+)$1	1	21	29	16.4545
(((..(((	chr1:985715-985954(+)$1	1	103	111	15.5454

#PSSM
G : 0.80	C : 0.12	A : 0.03	U : 0.01	g : 0.01	
C : 0.90	U : 0.03	G : 0.03	A : 0.01	
U : 0.94	G : 0.03	C : 0.01	
G : 0.90	C : 0.05	A : 0.03	
C : 0.92	G : 0.05	A : 0.01	
A : 0.81	U : 0.09	G : 0.05	C : 0.03	
G : 0.94	A : 0.01	C : 0.01	g : 0.01	
G : 0.87	C : 0.09	g : 0.01	U : 0.01	

#score	912.9090909090909
#seq	55
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_UTR_m3_run2.nuc.txt

#NT
CUGGG	chr16:2514258-2514555(+)$1	297	82	87	14.9999
CUGGG	chr7:100172588-100172803(-)$1	215	62	67	14.9999
CUGGG	chr16:67198881-67199149(+)$1	268	45	50	14.9999
CUGGG	chr8:144917313-144917620(-)$1	307	141	146	14.9999
CUGGG	chr6:44122803-44123095(+)$1	292	164	169	14.9999
CUGGG	chr1:158580647-158580873(-)$1	226	215	220	14.9999
CUGGG	chr22:19957568-19957851(-)$1	283	36	41	14.9999
CUGGG	chr8:145649799-145650052(-)$1	253	7	12	14.9999
CUGGG	chr11:208996-209303(+)$1	307	79	84	14.9999
CUGGG	chr16:29822112-29822389(+)$1	277	164	169	14.9999
cuggg	chr19:991805-992107(+)$1	302	17	22	14.9999
CUGGG	chr7:100171069-100171340(-)$1	271	98	103	14.9999
CUGGG	chr17:80685477-80685752(+)$1	275	113	118	14.9999
CUGGG	chr7:100172605-100172911(-)$1	306	104	109	14.9999
CUggg	chr9:139734719-139734982(+)$1	263	195	200	14.9999
CUGGG	chr1:11721497-11721776(+)$1	279	0	5	14.9999
CUGGG	chr14:23791040-23791278(+)$1	238	106	111	14.9999
CUGGG	chr20:62330951-62331211(-)$1	260	6	11	14.9999
CUGGG	chr19:18547547-18547869(-)$1	322	99	104	14.9999
CUGGG	chr15:91446109-91446410(+)$1	301	60	65	14.9999
CUGGG	chr22:19951902-19952183(+)$1	281	57	62	14.9999
CUGGG	chr2:192551331-192551618(+)$1	287	73	78	14.9999
CUGGG	chr19:1879461-1879742(-)$1	281	59	64	14.9999
CUGGG	chr16:8951937-8952234(-)$1	297	45	50	14.9999
CUGGG	chr19:50363548-50363825(+)$1	277	1	6	14.9999
CUGGG	chr2:242447505-242447838(-)$1	333	146	151	14.9999
CUGGG	chr7:5569511-5569748(-)$1	237	14	19	14.9999
CUGGG	chr2:64068081-64068414(+)$1	333	129	134	14.9999
CUGGG	chr10:103586152-103586453(-)$1	301	50	55	14.9999
cuggg	chr12:133287579-133287900(+)$1	321	20	25	14.9999
CUGGG	chr4:2935713-2935974(-)$1	261	133	138	14.9999
CUGGG	chr2:242447752-242448020(-)$1	268	62	67	14.9999
CUGGG	chrX:153207373-153207632(-)$1	259	73	78	14.9999
CUGGG	chr8:144921650-144921988(-)$1	338	95	100	14.9999
CUGGG	chr5:176980941-176981210(-)$1	269	61	66	14.9999
CUGGG	chr16:28222600-28222943(-)$1	343	285	290	14.9999
CUGGG	chr9:139904835-139905113(-)$1	278	49	54	14.9999
CUGGG	chr16:90015603-90015974(+)$1	371	77	82	14.9999
CUGGG	chr19:18478347-18478621(+)$1	274	205	210	14.9999
CUGGG	chr19:972870-973132(+)$1	262	10	15	14.9999
CUGGG	chr6:44123034-44123294(+)$1	260	93	98	14.9999
CUGGG	chr3:100428802-100429086(+)$1	284	42	47	14.9999
CUGGG	chr19:40738445-40738674(-)$1	229	213	218	14.9999
CUGGG	chr19:40738302-40738548(-)$1	246	87	92	14.9999
CUGGG	chr11:65374340-65374656(-)$1	316	39	44	14.9999
CUGGG	chr16:89760411-89760712(+)$1	301	37	42	14.9999
CUGGG	chr7:100170637-100170907(-)$1	270	94	99	14.9999
CUGGG	chr1:36787596-36787852(+)$1	256	1	6	14.9999
CUGGG	chr1:36790221-36790481(+)$1	260	36	41	14.9999
CUGGG	chrX:152936690-152936952(-)$1	262	50	55	14.9999
CUGGG	chr19:58991066-58991366(-)$1	300	35	40	14.9999
CUGGG	chr7:100172551-100172788(-)$1	237	47	52	14.9999
CUGGG	chr9:139904698-139904994(-)$1	296	5	10	14.9999
CUGGG	chr9:139728167-139728449(+)$1	282	78	83	14.9999
CUGGG	chr17:76122887-76123205(-)$1	318	84	89	14.9999
CUGGG	chr17:77081839-77082122(+)$1	283	2	7	14.9999
CUGGG	chr20:62330511-62330757(-)$1	246	60	65	14.9999
CUGGG	chr3:9862058-9862337(+)$1	279	67	72	14.9999
CUGGG	chr9:139904631-139904898(-)$1	267	4	9	14.9999
CUGGG	chr12:56554762-56555002(+)$1	240	77	82	14.9999
CUGGG	chr17:37824487-37824824(+)$1	337	219	224	14.9999

#otherMatches

#Struct PSSM
CC{A{	chr9:131832798-131833114(+)$1	316	51	56	14.9999
fffff	chr16:2514258-2514555(+)$1	297	82	87	14.9999
::ddd	chr7:100172588-100172803(-)$1	215	62	67	14.9999
EEEDD	chr16:67198881-67199149(+)$1	268	45	50	14.9999
ZEEEE	chr8:144917313-144917620(-)$1	307	141	146	14.9999
ZZDDD	chr6:44122803-44123095(+)$1	292	164	169	14.9999
oeeee	chr1:158580647-158580873(-)$1	226	215	220	14.9999
D{BBB	chr22:19957568-19957851(-)$1	283	36	41	14.9999
cc[al	chr8:145649799-145650052(-)$1	253	7	12	14.9999
GGGGG	chr11:208996-209303(+)$1	307	79	84	14.9999
fffff	chr16:29822112-29822389(+)$1	277	164	169	14.9999
DDKKD	chr19:991805-992107(+)$1	302	17	22	14.9999
ddd%%	chr7:100171069-100171340(-)$1	271	98	103	14.9999
::ccc	chr17:80685477-80685752(+)$1	275	113	118	14.9999
33ddd	chr7:100172605-100172911(-)$1	306	104	109	14.9999
gg333	chr9:139734719-139734982(+)$1	263	195	200	14.9999
:::ee	chr1:11721497-11721776(+)$1	279	0	5	14.9999
cccc[	chr14:23791040-23791278(+)$1	238	106	111	14.9999
GGGGG	chr20:62330951-62331211(-)$1	260	6	11	14.9999
]bbgg	chr19:18547547-18547869(-)$1	322	99	104	14.9999
FFBB{	chr15:91446109-91446410(+)$1	301	60	65	14.9999
CCBBL	chr22:19951902-19952183(+)$1	281	57	62	14.9999
chhhh	chr2:192551331-192551618(+)$1	287	73	78	14.9999
lllee	chr19:1879461-1879742(-)$1	281	59	64	14.9999
!!ddd	chr16:8951937-8952234(-)$1	297	45	50	14.9999
EEEE{	chr19:50363548-50363825(+)$1	277	1	6	14.9999
hhhhh	chr2:242447505-242447838(-)$1	333	146	151	14.9999
CCCCC	chr7:5569511-5569748(-)$1	237	14	19	14.9999
bbeee	chr2:64068081-64068414(+)$1	333	129	134	14.9999
{DDDD	chr10:103586152-103586453(-)$1	301	50	55	14.9999
e]eee	chr12:133287579-133287900(+)$1	321	20	25	14.9999
CC}A:	chr4:2935713-2935974(-)$1	261	133	138	14.9999
bb[a"	chr2:242447752-242448020(-)$1	268	62	67	14.9999
bb"""	chrX:153207373-153207632(-)$1	259	73	78	14.9999
bffff	chr8:144921650-144921988(-)$1	338	95	100	14.9999
eeeee	chr5:176980941-176981210(-)$1	269	61	66	14.9999
ddddr	chr16:28222600-28222943(-)$1	343	285	290	14.9999
fffoo	chr9:139904835-139905113(-)$1	278	49	54	14.9999
f]ccc	chr16:90015603-90015974(+)$1	371	77	82	14.9999
2eeee	chr19:18478347-18478621(+)$1	274	205	210	14.9999
HHHHH	chr19:972870-973132(+)$1	262	10	15	14.9999
ee!!a	chr6:44123034-44123294(+)$1	260	93	98	14.9999
[ccc[	chr3:100428802-100429086(+)$1	284	42	47	14.9999
mmmff	chr19:40738445-40738674(-)$1	229	213	218	14.9999
mmmff	chr19:40738302-40738548(-)$1	246	87	92	14.9999
cbb[c	chr11:65374340-65374656(-)$1	316	39	44	14.9999
3ccc]	chr16:89760411-89760712(+)$1	301	37	42	14.9999
fffff	chr7:100170637-100170907(-)$1	270	94	99	14.9999
CC{EE	chr1:36787596-36787852(+)$1	256	1	6	14.9999
ggggg	chr1:36790221-36790481(+)$1	260	36	41	14.9999
::DDD	chrX:152936690-152936952(-)$1	262	50	55	14.9999
ff%%%	chr19:58991066-58991366(-)$1	300	35	40	14.9999
::ddd	chr7:100172551-100172788(-)$1	237	47	52	14.9999
=====	chr9:139904698-139904994(-)$1	296	5	10	14.9999
ppppp	chr9:139728167-139728449(+)$1	282	78	83	14.9999
hhhhh	chr17:76122887-76123205(-)$1	318	84	89	14.9999
hhhhh	chr17:77081839-77082122(+)$1	283	2	7	14.9999
JJGGG	chr20:62330511-62330757(-)$1	246	60	65	14.9999
:::ee	chr3:9862058-9862337(+)$1	279	67	72	14.9999
DCCC{	chr9:139904631-139904898(-)$1	267	4	9	14.9999
AKKGG	chr12:56554762-56555002(+)$1	240	77	82	14.9999
2bb]c	chr17:37824487-37824824(+)$1	337	219	224	14.9999

#DB
((.(.	chr9:131832798-131833114(+)$1	1	51	56	14.9999
)))))	chr16:2514258-2514555(+)$1	1	82	87	14.9999
..(((	chr7:100172588-100172803(-)$1	1	62	67	14.9999
(((((	chr16:67198881-67199149(+)$1	1	45	50	14.9999
.))))	chr8:144917313-144917620(-)$1	1	141	146	14.9999
..)))	chr6:44122803-44123095(+)$1	1	164	169	14.9999
.))))	chr1:158580647-158580873(-)$1	1	215	220	14.9999
(.(((	chr22:19957568-19957851(-)$1	1	36	41	14.9999
((.(.	chr8:145649799-145650052(-)$1	1	7	12	14.9999
(((((	chr11:208996-209303(+)$1	1	79	84	14.9999
)))))	chr16:29822112-29822389(+)$1	1	164	169	14.9999
((..(	chr19:991805-992107(+)$1	1	17	22	14.9999
(((..	chr7:100171069-100171340(-)$1	1	98	103	14.9999
..(((	chr17:80685477-80685752(+)$1	1	113	118	14.9999
..)))	chr7:100172605-100172911(-)$1	1	104	109	14.9999
))...	chr9:139734719-139734982(+)$1	1	195	200	14.9999
...((	chr1:11721497-11721776(+)$1	1	0	5	14.9999
((((.	chr14:23791040-23791278(+)$1	1	106	111	14.9999
(((((	chr20:62330951-62331211(-)$1	1	6	11	14.9999
.))((	chr19:18547547-18547869(-)$1	1	99	104	14.9999
((((.	chr15:91446109-91446410(+)$1	1	60	65	14.9999
((((.	chr22:19951902-19952183(+)$1	1	57	62	14.9999
)))))	chr2:192551331-192551618(+)$1	1	73	78	14.9999
...))	chr19:1879461-1879742(-)$1	1	59	64	14.9999
..(((	chr16:8951937-8952234(-)$1	1	45	50	14.9999
((((.	chr19:50363548-50363825(+)$1	1	1	6	14.9999
(((((	chr2:242447505-242447838(-)$1	1	146	151	14.9999
(((((	chr7:5569511-5569748(-)$1	1	14	19	14.9999
(((((	chr2:64068081-64068414(+)$1	1	129	134	14.9999
.((((	chr10:103586152-103586453(-)$1	1	50	55	14.9999
).)))	chr12:133287579-133287900(+)$1	1	20	25	14.9999
)).).	chr4:2935713-2935974(-)$1	1	133	138	14.9999
((.(.	chr2:242447752-242448020(-)$1	1	62	67	14.9999
((...	chrX:153207373-153207632(-)$1	1	73	78	14.9999
)))))	chr8:144921650-144921988(-)$1	1	95	100	14.9999
(((((	chr5:176980941-176981210(-)$1	1	61	66	14.9999
((((.	chr16:28222600-28222943(-)$1	1	285	290	14.9999
(((..	chr9:139904835-139905113(-)$1	1	49	54	14.9999
).)))	chr16:90015603-90015974(+)$1	1	77	82	14.9999
.))))	chr19:18478347-18478621(+)$1	1	205	210	14.9999
(((((	chr19:972870-973132(+)$1	1	10	15	14.9999
((..(	chr6:44123034-44123294(+)$1	1	93	98	14.9999
.(((.	chr3:100428802-100429086(+)$1	1	42	47	14.9999
...))	chr19:40738445-40738674(-)$1	1	213	218	14.9999
...))	chr19:40738302-40738548(-)$1	1	87	92	14.9999
(((.(	chr11:65374340-65374656(-)$1	1	39	44	14.9999
.))).	chr16:89760411-89760712(+)$1	1	37	42	14.9999
)))))	chr7:100170637-100170907(-)$1	1	94	99	14.9999
((.((	chr1:36787596-36787852(+)$1	1	1	6	14.9999
)))))	chr1:36790221-36790481(+)$1	1	36	41	14.9999
..(((	chrX:152936690-152936952(-)$1	1	50	55	14.9999
((...	chr19:58991066-58991366(-)$1	1	35	40	14.9999
..(((	chr7:100172551-100172788(-)$1	1	47	52	14.9999
(((((	chr9:139904698-139904994(-)$1	1	5	10	14.9999
.....	chr9:139728167-139728449(+)$1	1	78	83	14.9999
)))))	chr17:76122887-76123205(-)$1	1	84	89	14.9999
(((((	chr17:77081839-77082122(+)$1	1	2	7	14.9999
(((((	chr20:62330511-62330757(-)$1	1	60	65	14.9999
...((	chr3:9862058-9862337(+)$1	1	67	72	14.9999
((((.	chr9:139904631-139904898(-)$1	1	4	9	14.9999
(..((	chr12:56554762-56555002(+)$1	1	77	82	14.9999
.)).)	chr17:37824487-37824824(+)$1	1	219	224	14.9999

#PSSM
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	

#score	929.9999999999999
#seq	62
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF304YLR_TBRG4_CDS_m2_run2.nuc.txt

#NT
ACU	chrM:9620-9854(+)$1	234	72	75	8.9999
ACU	chrM:9802-10028(+)$1	226	19	22	8.9999
ACU	chrM:7783-7989(+)$1	206	116	119	8.9999
ACU	chrM:8544-8784(+)$1	240	45	48	8.9999
ACU	chrM:10173-10380(+)$1	207	129	132	8.9999
ACU	chrM:10756-10982(+)$1	226	12	15	8.9999
ACU	chrM:13589-13808(+)$1	219	17	20	8.9999
ACU	chrM:15031-15244(+)$1	213	41	44	8.9999
ACU	chrM:11298-11517(+)$1	219	5	8	8.9999
ACU	chrM:15708-15927(+)$1	219	7	10	8.9999
ACU	chrM:10131-10346(+)$1	215	5	8	8.9999
ACU	chrM:9033-9282(+)$1	249	0	3	8.9999
ACU	chrM:11471-11721(+)$1	250	29	32	8.9999
ACU	chrM:10803-11027(+)$1	224	4	7	8.9999
ACU	chrM:7789-7993(+)$1	204	110	113	8.9999
ACU	chrM:8594-8814(+)$1	220	55	58	8.9999
ACU	chrM:6564-6772(+)$1	208	114	117	8.9999
ACU	chrM:10710-10950(+)$1	240	22	25	8.9999
ACU	chrM:7211-7448(+)$1	237	11	14	8.9999
ACU	chrM:10782-10990(+)$1	208	10	13	8.9999
ACU	chrM:11293-11498(+)$1	205	0	3	8.9999
ACU	chrM:10795-11002(+)$1	207	3	6	8.9999
ACU	chrM:5324-5599(+)$1	275	17	20	8.9999
ACU	chrM:9835-10043(+)$1	208	8	11	8.9999
ACU	chrM:9757-9977(+)$1	220	64	67	8.9999
ACU	chrM:9654-9874(+)$1	220	38	41	8.9999
ACU	chrM:15061-15268(+)$1	207	11	14	8.9999
ACU	chrM:8510-8744(+)$1	234	79	82	8.9999
ACU	chrM:7910-8119(+)$1	209	10	13	8.9999
ACU	chrM:11267-11493(+)$1	226	11	14	8.9999
ACU	chrM:10180-10387(+)$1	207	122	125	8.9999
ACU	chrM:8440-8658(+)$1	218	0	3	8.9999
ACU	chrM:7778-7983(+)$1	205	3	6	8.9999
ACU	chrM:12510-12733(+)$1	223	20	23	8.9999
ACU	chrM:15613-15863(+)$1	250	18	21	8.9999
ACU	chrM:6584-6793(+)$1	209	94	97	8.9999
ACU	chrM:15425-15658(+)$1	233	17	20	8.9999
ACU	chrM:9484-9706(+)$1	222	30	33	8.9999
ACU	chrM:7793-8044(+)$1	251	106	109	8.9999
ACU	chrM:15392-15603(+)$1	211	22	25	8.9999
ACU	chrM:15590-15813(+)$1	223	17	20	8.9999
ACU	chrM:10187-10394(+)$1	207	115	118	8.9999
ACU	chrM:15016-15231(+)$1	215	56	59	8.9999
ACU	chrM:15458-15708(+)$1	250	17	20	8.9999
ACU	chrM:11668-11876(+)$1	208	51	54	8.9999
ACU	chrM:6484-6705(+)$1	221	1	4	8.9999
ACU	chrM:12567-12821(+)$1	254	12	15	8.9999
ACU	chrM:15404-15625(+)$1	221	10	13	8.9999
ACU	chrM:10194-10408(+)$1	214	108	111	8.9999
ACU	chrM:11657-11868(+)$1	211	62	65	8.9999
ACU	chrM:7844-8049(+)$1	205	55	58	8.9999
ACU	chrM:10827-11055(+)$1	228	49	52	8.9999
ACU	chrM:8614-8840(+)$1	226	35	38	8.9999
ACU	chrM:4584-4823(+)$1	239	122	125	8.9999
ACU	chrM:10146-10373(+)$1	227	156	159	8.9999
ACU	chrM:4623-4856(+)$1	233	83	86	8.9999
ACU	chrM:4819-5046(+)$1	227	55	58	8.9999
ACU	chrM:7869-8109(+)$1	240	30	33	8.9999
ACU	chrM:13608-13840(+)$1	232	49	52	8.9999
ACU	chrM:13398-13610(+)$1	212	21	24	8.9999
ACU	chrM:8405-8637(+)$1	232	8	11	8.9999
ACU	chrM:9506-9728(+)$1	222	8	11	8.9999
ACU	chrM:13375-13593(+)$1	218	44	47	8.9999
ACU	chrM:12501-12710(+)$1	209	29	32	8.9999
ACU	chrM:14969-15216(+)$1	247	103	106	8.9999
ACU	chrM:13393-13598(+)$1	205	26	29	8.9999
ACU	chrM:10750-10956(+)$1	206	4	7	8.9999
ACU	chrM:9528-9752(+)$1	224	11	14	8.9999
ACU	chrM:13804-14076(+)$1	272	12	15	8.9999
ACU	chrM:4846-5085(+)$1	239	28	31	8.9999
ACU	chrM:6799-7050(+)$1	251	73	76	8.9999
ACU	chrM:6514-6735(+)$1	221	8	11	8.9999
ACU	chrM:13305-13575(+)$1	270	45	48	8.9999
ACU	chrM:13437-13679(+)$1	242	4	7	8.9999
ACU	chrM:6535-6761(+)$1	226	143	146	8.9999
ACU	chrM:8437-8640(+)$1	203	3	6	8.9999
ACU	chrM:9828-10035(+)$1	207	15	18	8.9999
ACU	chrM:10869-11084(+)$1	215	7	10	8.9999
ACU	chrM:12622-12862(+)$1	240	26	29	8.9999
ACU	chrM:14361-14583(-)$1	222	1	4	8.9999
ACU	chrM:10209-10429(+)$1	220	93	96	8.9999
ACU	chrM:14383-14601(-)$1	218	19	22	8.9999
ACU	chrM:11032-11262(+)$1	230	6	9	8.9999
ACU	chrM:7757-7978(+)$1	221	24	27	8.9999
ACU	chrM:13171-13415(+)$1	244	18	21	8.9999
ACU	chrM:14211-14484(-)$1	273	17	20	8.9999
ACU	chrM:12533-12742(+)$1	209	3	6	8.9999
ACU	chrM:9726-9943(+)$1	217	22	25	8.9999
ACU	chrM:7744-7957(+)$1	213	37	40	8.9999
ACU	chrM:13142-13371(+)$1	229	7	10	8.9999
ACU	chrM:13947-14170(+)$1	223	39	42	8.9999
ACU	chrM:6475-6684(+)$1	209	10	13	8.9999
ACU	chrM:4778-5019(+)$1	241	6	9	8.9999
ACU	chrM:13259-13474(+)$1	215	4	7	8.9999
ACU	chrM:6439-6675(+)$1	236	46	49	8.9999

#otherMatches

#Struct PSSM
:::	chrM:10791-10995(+)$1	204	1	4	8.9999
lll	chrM:9620-9854(+)$1	234	72	75	8.9999
CCC	chrM:9802-10028(+)$1	226	19	22	8.9999
eee	chrM:7783-7989(+)$1	206	116	119	8.9999
:::	chrM:8544-8784(+)$1	240	45	48	8.9999
eee	chrM:10173-10380(+)$1	207	129	132	8.9999
:::	chrM:10756-10982(+)$1	226	12	15	8.9999
:bb	chrM:13589-13808(+)$1	219	17	20	8.9999
:GG	chrM:15031-15244(+)$1	213	41	44	8.9999
EEE	chrM:11298-11517(+)$1	219	5	8	8.9999
::E	chrM:15708-15927(+)$1	219	7	10	8.9999
:::	chrM:10131-10346(+)$1	215	5	8	8.9999
::E	chrM:9033-9282(+)$1	249	0	3	8.9999
:::	chrM:11471-11721(+)$1	250	29	32	8.9999
[dd	chrM:10803-11027(+)$1	224	4	7	8.9999
eee	chrM:7789-7993(+)$1	204	110	113	8.9999
d++	chrM:8594-8814(+)$1	220	55	58	8.9999
ooo	chrM:6564-6772(+)$1	208	114	117	8.9999
^^^	chrM:10710-10950(+)$1	240	22	25	8.9999
ood	chrM:7211-7448(+)$1	237	11	14	8.9999
:::	chrM:10782-10990(+)$1	208	10	13	8.9999
:::	chrM:11293-11498(+)$1	205	0	3	8.9999
:BB	chrM:10795-11002(+)$1	207	3	6	8.9999
LLL	chrM:5324-5599(+)$1	275	17	20	8.9999
^^^	chrM:9835-10043(+)$1	208	8	11	8.9999
ccn	chrM:9757-9977(+)$1	220	64	67	8.9999
lll	chrM:9654-9874(+)$1	220	38	41	8.9999
FFF	chrM:15061-15268(+)$1	207	11	14	8.9999
:::	chrM:8510-8744(+)$1	234	79	82	8.9999
C::	chrM:7910-8119(+)$1	209	10	13	8.9999
f^^	chrM:11267-11493(+)$1	226	11	14	8.9999
eee	chrM:10180-10387(+)$1	207	122	125	8.9999
:::	chrM:8440-8658(+)$1	218	0	3	8.9999
:::	chrM:7778-7983(+)$1	205	3	6	8.9999
GGG	chrM:12510-12733(+)$1	223	20	23	8.9999
EEE	chrM:15613-15863(+)$1	250	18	21	8.9999
ooo	chrM:6584-6793(+)$1	209	94	97	8.9999
:::	chrM:15425-15658(+)$1	233	17	20	8.9999
(((	chrM:9484-9706(+)$1	222	30	33	8.9999
eee	chrM:7793-8044(+)$1	251	106	109	8.9999
:::	chrM:15392-15603(+)$1	211	22	25	8.9999
:ff	chrM:15590-15813(+)$1	223	17	20	8.9999
eee	chrM:10187-10394(+)$1	207	115	118	8.9999
:GG	chrM:15016-15231(+)$1	215	56	59	8.9999
:::	chrM:15458-15708(+)$1	250	17	20	8.9999
coo	chrM:11668-11876(+)$1	208	51	54	8.9999
::D	chrM:6484-6705(+)$1	221	1	4	8.9999
FFF	chrM:12567-12821(+)$1	254	12	15	8.9999
:::	chrM:15404-15625(+)$1	221	10	13	8.9999
%cc	chrM:10194-10408(+)$1	214	108	111	8.9999
coo	chrM:11657-11868(+)$1	211	62	65	8.9999
nnn	chrM:7844-8049(+)$1	205	55	58	8.9999
^^^	chrM:10827-11055(+)$1	228	49	52	8.9999
d++	chrM:8614-8840(+)$1	226	35	38	8.9999
>>c	chrM:4584-4823(+)$1	239	122	125	8.9999
c]c	chrM:10146-10373(+)$1	227	156	159	8.9999
:::	chrM:4623-4856(+)$1	233	83	86	8.9999
:::	chrM:4819-5046(+)$1	227	55	58	8.9999
eee	chrM:7869-8109(+)$1	240	30	33	8.9999
^^^	chrM:13608-13840(+)$1	232	49	52	8.9999
^^^	chrM:13398-13610(+)$1	212	21	24	8.9999
:::	chrM:8405-8637(+)$1	232	8	11	8.9999
::E	chrM:9506-9728(+)$1	222	8	11	8.9999
:::	chrM:13375-13593(+)$1	218	44	47	8.9999
GGG	chrM:12501-12710(+)$1	209	29	32	8.9999
$$d	chrM:14969-15216(+)$1	247	103	106	8.9999
^^^	chrM:13393-13598(+)$1	205	26	29	8.9999
:::	chrM:10750-10956(+)$1	206	4	7	8.9999
::H	chrM:9528-9752(+)$1	224	11	14	8.9999
:::	chrM:13804-14076(+)$1	272	12	15	8.9999
:::	chrM:4846-5085(+)$1	239	28	31	8.9999
444	chrM:6799-7050(+)$1	251	73	76	8.9999
:::	chrM:6514-6735(+)$1	221	8	11	8.9999
dnn	chrM:13305-13575(+)$1	270	45	48	8.9999
:::	chrM:13437-13679(+)$1	242	4	7	8.9999
ooo	chrM:6535-6761(+)$1	226	143	146	8.9999
:::	chrM:8437-8640(+)$1	203	3	6	8.9999
:::	chrM:9828-10035(+)$1	207	15	18	8.9999
:::	chrM:10869-11084(+)$1	215	7	10	8.9999
qgg	chrM:12622-12862(+)$1	240	26	29	8.9999
:::	chrM:14361-14583(-)$1	222	1	4	8.9999
eee	chrM:10209-10429(+)$1	220	93	96	8.9999
KFF	chrM:14383-14601(-)$1	218	19	22	8.9999
:::	chrM:11032-11262(+)$1	230	6	9	8.9999
555	chrM:7757-7978(+)$1	221	24	27	8.9999
ccc	chrM:13171-13415(+)$1	244	18	21	8.9999
FFF	chrM:14211-14484(-)$1	273	17	20	8.9999
:EE	chrM:12533-12742(+)$1	209	3	6	8.9999
%%%	chrM:9726-9943(+)$1	217	22	25	8.9999
:::	chrM:7744-7957(+)$1	213	37	40	8.9999
:::	chrM:13142-13371(+)$1	229	7	10	8.9999
:::	chrM:13947-14170(+)$1	223	39	42	8.9999
ccc	chrM:6475-6684(+)$1	209	10	13	8.9999
:::	chrM:4778-5019(+)$1	241	6	9	8.9999
:EE	chrM:13259-13474(+)$1	215	4	7	8.9999
ccc	chrM:6439-6675(+)$1	236	46	49	8.9999

#DB
...	chrM:10791-10995(+)$1	1	1	4	8.9999
...	chrM:9620-9854(+)$1	1	72	75	8.9999
(((	chrM:9802-10028(+)$1	1	19	22	8.9999
(((	chrM:7783-7989(+)$1	1	116	119	8.9999
...	chrM:8544-8784(+)$1	1	45	48	8.9999
(((	chrM:10173-10380(+)$1	1	129	132	8.9999
...	chrM:10756-10982(+)$1	1	12	15	8.9999
.((	chrM:13589-13808(+)$1	1	17	20	8.9999
.((	chrM:15031-15244(+)$1	1	41	44	8.9999
(((	chrM:11298-11517(+)$1	1	5	8	8.9999
..(	chrM:15708-15927(+)$1	1	7	10	8.9999
...	chrM:10131-10346(+)$1	1	5	8	8.9999
..(	chrM:9033-9282(+)$1	1	0	3	8.9999
...	chrM:11471-11721(+)$1	1	29	32	8.9999
.((	chrM:10803-11027(+)$1	1	4	7	8.9999
(((	chrM:7789-7993(+)$1	1	110	113	8.9999
(..	chrM:8594-8814(+)$1	1	55	58	8.9999
...	chrM:6564-6772(+)$1	1	114	117	8.9999
...	chrM:10710-10950(+)$1	1	22	25	8.9999
..)	chrM:7211-7448(+)$1	1	11	14	8.9999
...	chrM:10782-10990(+)$1	1	10	13	8.9999
...	chrM:11293-11498(+)$1	1	0	3	8.9999
.((	chrM:10795-11002(+)$1	1	3	6	8.9999
...	chrM:5324-5599(+)$1	1	17	20	8.9999
...	chrM:9835-10043(+)$1	1	8	11	8.9999
((.	chrM:9757-9977(+)$1	1	64	67	8.9999
...	chrM:9654-9874(+)$1	1	38	41	8.9999
(((	chrM:15061-15268(+)$1	1	11	14	8.9999
...	chrM:8510-8744(+)$1	1	79	82	8.9999
(..	chrM:7910-8119(+)$1	1	10	13	8.9999
(..	chrM:11267-11493(+)$1	1	11	14	8.9999
(((	chrM:10180-10387(+)$1	1	122	125	8.9999
...	chrM:8440-8658(+)$1	1	0	3	8.9999
...	chrM:7778-7983(+)$1	1	3	6	8.9999
(((	chrM:12510-12733(+)$1	1	20	23	8.9999
(((	chrM:15613-15863(+)$1	1	18	21	8.9999
...	chrM:6584-6793(+)$1	1	94	97	8.9999
...	chrM:15425-15658(+)$1	1	17	20	8.9999
...	chrM:9484-9706(+)$1	1	30	33	8.9999
(((	chrM:7793-8044(+)$1	1	106	109	8.9999
...	chrM:15392-15603(+)$1	1	22	25	8.9999
.((	chrM:15590-15813(+)$1	1	17	20	8.9999
(((	chrM:10187-10394(+)$1	1	115	118	8.9999
.((	chrM:15016-15231(+)$1	1	56	59	8.9999
...	chrM:15458-15708(+)$1	1	17	20	8.9999
(..	chrM:11668-11876(+)$1	1	51	54	8.9999
..(	chrM:6484-6705(+)$1	1	1	4	8.9999
(((	chrM:12567-12821(+)$1	1	12	15	8.9999
...	chrM:15404-15625(+)$1	1	10	13	8.9999
.((	chrM:10194-10408(+)$1	1	108	111	8.9999
(..	chrM:11657-11868(+)$1	1	62	65	8.9999
...	chrM:7844-8049(+)$1	1	55	58	8.9999
...	chrM:10827-11055(+)$1	1	49	52	8.9999
(..	chrM:8614-8840(+)$1	1	35	38	8.9999
..)	chrM:4584-4823(+)$1	1	122	125	8.9999
).)	chrM:10146-10373(+)$1	1	156	159	8.9999
...	chrM:4623-4856(+)$1	1	83	86	8.9999
...	chrM:4819-5046(+)$1	1	55	58	8.9999
(((	chrM:7869-8109(+)$1	1	30	33	8.9999
...	chrM:13608-13840(+)$1	1	49	52	8.9999
...	chrM:13398-13610(+)$1	1	21	24	8.9999
...	chrM:8405-8637(+)$1	1	8	11	8.9999
..(	chrM:9506-9728(+)$1	1	8	11	8.9999
...	chrM:13375-13593(+)$1	1	44	47	8.9999
(((	chrM:12501-12710(+)$1	1	29	32	8.9999
..(	chrM:14969-15216(+)$1	1	103	106	8.9999
...	chrM:13393-13598(+)$1	1	26	29	8.9999
...	chrM:10750-10956(+)$1	1	4	7	8.9999
..(	chrM:9528-9752(+)$1	1	11	14	8.9999
...	chrM:13804-14076(+)$1	1	12	15	8.9999
...	chrM:4846-5085(+)$1	1	28	31	8.9999
...	chrM:6799-7050(+)$1	1	73	76	8.9999
...	chrM:6514-6735(+)$1	1	8	11	8.9999
(..	chrM:13305-13575(+)$1	1	45	48	8.9999
...	chrM:13437-13679(+)$1	1	4	7	8.9999
...	chrM:6535-6761(+)$1	1	143	146	8.9999
...	chrM:8437-8640(+)$1	1	3	6	8.9999
...	chrM:9828-10035(+)$1	1	15	18	8.9999
...	chrM:10869-11084(+)$1	1	7	10	8.9999
.))	chrM:12622-12862(+)$1	1	26	29	8.9999
...	chrM:14361-14583(-)$1	1	1	4	8.9999
(((	chrM:10209-10429(+)$1	1	93	96	8.9999
.((	chrM:14383-14601(-)$1	1	19	22	8.9999
...	chrM:11032-11262(+)$1	1	6	9	8.9999
...	chrM:7757-7978(+)$1	1	24	27	8.9999
(((	chrM:13171-13415(+)$1	1	18	21	8.9999
(((	chrM:14211-14484(-)$1	1	17	20	8.9999
.((	chrM:12533-12742(+)$1	1	3	6	8.9999
...	chrM:9726-9943(+)$1	1	22	25	8.9999
...	chrM:7744-7957(+)$1	1	37	40	8.9999
...	chrM:13142-13371(+)$1	1	7	10	8.9999
...	chrM:13947-14170(+)$1	1	39	42	8.9999
(((	chrM:6475-6684(+)$1	1	10	13	8.9999
...	chrM:4778-5019(+)$1	1	6	9	8.9999
.((	chrM:13259-13474(+)$1	1	4	7	8.9999
(((	chrM:6439-6675(+)$1	1	46	49	8.9999

#PSSM
A : 0.99	
C : 0.99	
U : 0.99	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_UTR_m2_run2.nuc.txt

#NT
UUUUGUU	chr4:110661879-110662121(-)$1	242	229	236	17.6964
UUUUGCU	chr12:89742056-89742309(-)$1	253	102	109	14.3035
UUUUGUU	chr7:6502458-6502675(-)$1	217	9	16	17.6964
UUUUUUU	chr11:68524807-68525065(-)$1	258	92	99	15.3750
UUUUAUU	chr12:124082063-124082322(+)$1	259	85	92	15.1071
UUUUCUU	chr13:100215277-100215523(+)$1	246	133	140	15.8214
UUUUCUU	chr1:1326515-1326779(-)$1	264	183	190	15.8214
UUUUUUU	chr2:102510959-102511193(+)$1	234	98	105	15.3750
UUUUGUU	chr3:149087389-149087636(-)$1	247	166	173	17.6964
UUUUGUU	chr2:231913541-231913759(+)$1	218	5	12	17.6964
UUUGGUU	chr17:64208129-64208389(-)$1	260	4	11	13.2321
UUUUGUU	chr19:57324217-57324471(-)$1	254	10	17	17.6964
UUUUGCU	chr8:22279127-22279380(+)$1	253	57	64	14.3035
UUUUCUU	chrX:119570273-119570566(-)$1	293	104	111	15.8214
UUUUUUU	chr19:972592-972830(+)$1	238	38	45	15.3750
UUUUGUU	chr5:32355422-32355714(-)$1	292	239	246	17.6964
UUUUGCU	chr6:122765941-122766214(-)$1	273	109	116	14.3035
UUUUGAU	chr1:234742545-234742773(-)$1	228	17	24	14.0357
UUUUGUU	chr19:13054726-13054990(+)$1	264	135	142	17.6964
uuuucuu	chr1:154322462-154322710(+)$1	248	62	69	15.8214
UUUUCUU	chr8:62538450-62538660(-)$1	210	2	9	15.8214
UUUUCUU	chr6:142767035-142767311(+)$1	276	41	48	15.8214
UUUUGUU	chr12:122239672-122239917(-)$1	245	135	142	17.6964
UUUUGUU	chr17:70122311-70122582(+)$1	271	112	119	17.6964
UUUUGUU	chr14:53108932-53109188(-)$1	256	31	38	17.6964
UUUUCUU	chr2:63273415-63273666(+)$1	251	94	101	15.8214
UUUUGCU	chr14:24114009-24114245(+)$1	236	180	187	14.3035
UUUUGUU	chr2:20232482-20232741(-)$1	259	113	120	17.6964
UUUUGUU	chr2:47128980-47129247(-)$1	267	249	256	17.6964
UUUUUUU	chr3:13358780-13359071(-)$1	291	95	102	15.3750
UUUUCUU	chr14:75601091-75601349(-)$1	258	93	100	15.8214
UUUUGCU	chr22:38203220-38203427(+)$1	207	166	173	14.3035
uuuuuuu	chr20:46284436-46284692(+)$1	256	95	102	15.3750
UUUUGCU	chr6:109688419-109688664(-)$1	245	15	22	14.3035
UUUUGAU	chr3:41281703-41281962(+)$1	259	42	49	14.0357
UUUUCUU	chr7:128409755-128410030(+)$1	275	90	97	15.8214
UUUUGAU	chr12:50158491-50158714(+)$1	223	155	162	14.0357
UUUUGCU	chr22:38203235-38203456(+)$1	221	151	158	14.3035
UUUUCUU	chr3:149683690-149683950(-)$1	260	85	92	15.8214
UUUUGUU	chr9:33111919-33112173(-)$1	254	99	106	17.6964
UUUUGUU	chr17:56082488-56082735(-)$1	247	56	63	17.6964
UUUGGUU	chr11:70281280-70281521(+)$1	241	47	54	13.2321
UUUGGUU	chr10:71910165-71910421(-)$1	256	21	28	13.2321
UUUUGUU	chr2:85547318-85547611(-)$1	293	121	128	17.6964
UUUUUUU	chr3:30733766-30733995(+)$1	229	217	224	15.3750
UUUUAUU	chr7:100781409-100781654(+)$1	245	6	13	15.1071
uuuuguu	chr17:18111742-18112014(+)$1	272	23	30	17.6964
UUUUAUU	chr3:30735401-30735663(+)$1	262	23	30	15.1071
UUUUAUU	chr4:26433756-26434002(+)$1	246	83	90	15.1071
UUUUCUU	chr5:179156431-179156671(+)$1	240	138	145	15.8214
UUUUGAU	chr5:52390228-52390504(+)$1	276	123	130	14.0357
UUUUGUU	chr6:145172240-145172498(+)$1	258	69	76	17.6964
UUUUUUU	chr7:94297116-94297340(+)$1	224	16	23	15.3750
UUUUCUU	chr5:179048344-179048577(-)$1	233	167	174	15.8214
UUUUGUU	chr19:54377713-54377986(+)$1	273	259	266	17.6964

#otherMatches

#Struct PSSM
mmmmccc	chr3:127788578-127788819(+)$1	241	203	210	17.6964
:::::::	chr4:110661879-110662121(-)$1	242	229	236	17.6964
meeeeee	chr12:89742056-89742309(-)$1	253	102	109	14.3035
KCCC{GG	chr7:6502458-6502675(-)$1	217	9	16	17.6964
444ffff	chr11:68524807-68525065(-)$1	258	92	99	15.3750
:::::::	chr12:124082063-124082322(+)$1	259	85	92	15.1071
oofffff	chr13:100215277-100215523(+)$1	246	133	140	15.8214
nnnccc2	chr1:1326515-1326779(-)$1	264	183	190	15.8214
eeeee!!	chr2:102510959-102511193(+)$1	234	98	105	15.3750
::fffff	chr3:149087389-149087636(-)$1	247	166	173	17.6964
d"""iii	chr2:231913541-231913759(+)$1	218	5	12	17.6964
LLLCCC{	chr17:64208129-64208389(-)$1	260	4	11	13.2321
cc[dddd	chr19:57324217-57324471(-)$1	254	10	17	17.6964
=======	chr8:22279127-22279380(+)$1	253	57	64	14.3035
gggg22a	chrX:119570273-119570566(-)$1	293	104	111	15.8214
oooooof	chr19:972592-972830(+)$1	238	38	45	15.3750
a!!dddd	chr5:32355422-32355714(-)$1	292	239	246	17.6964
fffcccp	chr6:122765941-122766214(-)$1	273	109	116	14.3035
IIIIIII	chr1:234742545-234742773(-)$1	228	17	24	14.0357
xxxxxxx	chr19:13054726-13054990(+)$1	264	135	142	17.6964
CC:::::	chr1:154322462-154322710(+)$1	248	62	69	15.8214
:::::::	chr8:62538450-62538660(-)$1	210	2	9	15.8214
"""ccc[	chr6:142767035-142767311(+)$1	276	41	48	15.8214
::EEEEE	chr12:122239672-122239917(-)$1	245	135	142	17.6964
eeee444	chr17:70122311-70122582(+)$1	271	112	119	17.6964
%%%%%ff	chr14:53108932-53109188(-)$1	256	31	38	17.6964
:::::::	chr2:63273415-63273666(+)$1	251	94	101	15.8214
55hhhhh	chr14:24114009-24114245(+)$1	236	180	187	14.3035
=======	chr2:20232482-20232741(-)$1	259	113	120	17.6964
ggggggg	chr2:47128980-47129247(-)$1	267	249	256	17.6964
:::::::	chr3:13358780-13359071(-)$1	291	95	102	15.3750
GGGGG::	chr14:75601091-75601349(-)$1	258	93	100	15.8214
EE}DDDD	chr22:38203220-38203427(+)$1	207	166	173	14.3035
hhhhhhh	chr20:46284436-46284692(+)$1	256	95	102	15.3750
mmmmccc	chr6:109688419-109688664(-)$1	245	15	22	14.3035
wwwwddd	chr3:41281703-41281962(+)$1	259	42	49	14.0357
oooooob	chr7:128409755-128410030(+)$1	275	90	97	15.8214
iiiiill	chr12:50158491-50158714(+)$1	223	155	162	14.0357
mmbb]cc	chr22:38203235-38203456(+)$1	221	151	158	14.3035
:::::::	chr3:149683690-149683950(-)$1	260	85	92	15.8214
$dddd[d	chr9:33111919-33112173(-)$1	254	99	106	17.6964
ooooccc	chr17:56082488-56082735(-)$1	247	56	63	17.6964
c]ddddc	chr11:70281280-70281521(+)$1	241	47	54	13.2321
ooo====	chr10:71910165-71910421(-)$1	256	21	28	13.2321
ggg[aoo	chr2:85547318-85547611(-)$1	293	121	128	17.6964
qqhhhhh	chr3:30733766-30733995(+)$1	229	217	224	15.3750
hhh[eee	chr7:100781409-100781654(+)$1	245	6	13	15.1071
NNNDDDD	chr17:18111742-18112014(+)$1	272	23	30	17.6964
qqqqq==	chr3:30735401-30735663(+)$1	262	23	30	15.1071
dddd]dd	chr4:26433756-26434002(+)$1	246	83	90	15.1071
ffqqqqq	chr5:179156431-179156671(+)$1	240	138	145	15.8214
ggggiii	chr5:52390228-52390504(+)$1	276	123	130	14.0357
::eeeee	chr6:145172240-145172498(+)$1	258	69	76	17.6964
fffff!!	chr7:94297116-94297340(+)$1	224	16	23	15.3750
ddd5555	chr5:179048344-179048577(-)$1	233	167	174	15.8214
boooooo	chr19:54377713-54377986(+)$1	273	259	266	17.6964

#DB
....)))	chr3:127788578-127788819(+)$1	1	203	210	17.6964
.......	chr4:110661879-110662121(-)$1	1	229	236	17.6964
.)))))(	chr12:89742056-89742309(-)$1	1	102	109	14.3035
.(((.((	chr7:6502458-6502675(-)$1	1	9	16	17.6964
...))))	chr11:68524807-68525065(-)$1	1	92	99	15.3750
.......	chr12:124082063-124082322(+)$1	1	85	92	15.1071
..)))))	chr13:100215277-100215523(+)$1	1	133	140	15.8214
...))).	chr1:1326515-1326779(-)$1	1	183	190	15.8214
(((((..	chr2:102510959-102511193(+)$1	1	98	105	15.3750
..(((((	chr3:149087389-149087636(-)$1	1	166	173	17.6964
(...(((	chr2:231913541-231913759(+)$1	1	5	12	17.6964
...(((.	chr17:64208129-64208389(-)$1	1	4	11	13.2321
((.((((	chr19:57324217-57324471(-)$1	1	10	17	17.6964
(((((((	chr8:22279127-22279380(+)$1	1	57	64	14.3035
))))..)	chrX:119570273-119570566(-)$1	1	104	111	15.8214
......)	chr19:972592-972830(+)$1	1	38	45	15.3750
(..((((	chr5:32355422-32355714(-)$1	1	239	246	17.6964
)))(((.	chr6:122765941-122766214(-)$1	1	109	116	14.3035
(((((((	chr1:234742545-234742773(-)$1	1	17	24	14.0357
.......	chr19:13054726-13054990(+)$1	1	135	142	17.6964
((.....	chr1:154322462-154322710(+)$1	1	62	69	15.8214
.......	chr8:62538450-62538660(-)$1	1	2	9	15.8214
...(((.	chr6:142767035-142767311(+)$1	1	41	48	15.8214
..(((((	chr12:122239672-122239917(-)$1	1	135	142	17.6964
))))...	chr17:70122311-70122582(+)$1	1	112	119	17.6964
.....((	chr14:53108932-53109188(-)$1	1	31	38	17.6964
.......	chr2:63273415-63273666(+)$1	1	94	101	15.8214
..)))))	chr14:24114009-24114245(+)$1	1	180	187	14.3035
)))))))	chr2:20232482-20232741(-)$1	1	113	120	17.6964
)))))))	chr2:47128980-47129247(-)$1	1	249	256	17.6964
.......	chr3:13358780-13359071(-)$1	1	95	102	15.3750
(((((..	chr14:75601091-75601349(-)$1	1	93	100	15.8214
)).))))	chr22:38203220-38203427(+)$1	1	166	173	14.3035
)))))))	chr20:46284436-46284692(+)$1	1	95	102	15.3750
....)))	chr6:109688419-109688664(-)$1	1	15	22	14.3035
....)))	chr3:41281703-41281962(+)$1	1	42	49	14.0357
......)	chr7:128409755-128410030(+)$1	1	90	97	15.8214
(((((..	chr12:50158491-50158714(+)$1	1	155	162	14.0357
..)).))	chr22:38203235-38203456(+)$1	1	151	158	14.3035
.......	chr3:149683690-149683950(-)$1	1	85	92	15.8214
.((((.(	chr9:33111919-33112173(-)$1	1	99	106	17.6964
....)))	chr17:56082488-56082735(-)$1	1	56	63	17.6964
).)))))	chr11:70281280-70281521(+)$1	1	47	54	13.2321
...))))	chr10:71910165-71910421(-)$1	1	21	28	13.2321
(((.(..	chr2:85547318-85547611(-)$1	1	121	128	17.6964
..)))))	chr3:30733766-30733995(+)$1	1	217	224	15.3750
(((.(((	chr7:100781409-100781654(+)$1	1	6	13	15.1071
...((((	chr17:18111742-18112014(+)$1	1	23	30	17.6964
.....))	chr3:30735401-30735663(+)$1	1	23	30	15.1071
)))).))	chr4:26433756-26434002(+)$1	1	83	90	15.1071
((.....	chr5:179156431-179156671(+)$1	1	138	145	15.8214
(((((((	chr5:52390228-52390504(+)$1	1	123	130	14.0357
..(((((	chr6:145172240-145172498(+)$1	1	69	76	17.6964
(((((..	chr7:94297116-94297340(+)$1	1	16	23	15.3750
)))....	chr5:179048344-179048577(-)$1	1	167	174	15.8214
(......	chr19:54377713-54377986(+)$1	1	259	266	17.6964

#PSSM
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
U : 0.89	G : 0.05	u : 0.05	
G : 0.57	C : 0.19	U : 0.10	A : 0.07	c : 0.01	u : 0.01	g : 0.01	
U : 0.75	C : 0.12	A : 0.07	u : 0.05	
U : 0.94	u : 0.05	

#score	890.1071428571438
#seq	56
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_CDS_m2_run1.nuc.txt

#NT
GGAG	chr19:2438271-2438517(-)$1	246	0	4	12.0000
GGAG	chr19:42396696-42396940(+)$1	244	29	33	12.0000
GGAG	chr9:35711558-35711807(-)$1	249	194	198	12.0000
GGAG	chr17:80042100-80042322(-)$1	222	6	10	12.0000
GGAG	chr21:38567986-38568277(+)$1	291	123	127	12.0000
GGAG	chr19:39205011-39205236(+)$1	225	45	49	12.0000
GGAG	chr8:144940615-144940867(-)$1	252	24	28	12.0000
GGAG	chr17:40034258-40034506(-)$1	248	4	8	12.0000
GGAG	chr14:65239263-65239531(-)$1	268	29	33	12.0000
GGAG	chr9:35713117-35713339(-)$1	222	46	50	12.0000
GGAG	chr14:102486187-102486484(+)$1	297	41	45	12.0000
GGAG	chr12:124197008-124197324(+)$1	316	56	60	12.0000
GGAG	chr15:90931443-90931729(+)$1	286	57	61	12.0000
GGAG	chr1:193028649-193028930(+)$1	281	29	33	12.0000
GGAG	chr12:57894056-57894380(+)$1	324	107	111	12.0000
GGAG	chrX:53574886-53575142(-)$1	256	206	210	12.0000
GGAG	chrX:77369193-77369467(+)$1	274	6	10	12.0000
GGAG	chr17:1556860-1557073(-)$1	213	162	166	12.0000
GGAG	chr12:116714827-116715086(-)$1	259	142	146	12.0000
GGAG	chr1:67895825-67896071(-)$1	246	61	65	12.0000
GGAG	chr5:179247961-179248264(+)$1	303	13	17	12.0000
GGAG	chr19:59060901-59061117(+)$1	216	202	206	12.0000
GGAG	chr2:54858440-54858738(+)$1	298	4	8	12.0000
GGAG	chr11:62490990-62491275(-)$1	285	47	51	12.0000
GGAG	chr2:48010498-48010732(+)$1	234	22	26	12.0000
GGAG	chr6:31760540-31760771(-)$1	231	189	193	12.0000
GGAG	chr17:80039388-80039633(-)$1	245	26	30	12.0000
GGAG	chrX:153589709-153589959(-)$1	250	43	47	12.0000
GGAG	chr3:184016989-184017286(+)$1	297	61	65	12.0000
GGAG	chr17:1578386-1578636(-)$1	250	28	32	12.0000
GGAG	chr12:56639060-56639342(-)$1	282	210	214	12.0000
GGAG	chr22:23610494-23610790(+)$1	296	5	9	12.0000
GGAG	chr3:12977059-12977362(-)$1	303	100	104	12.0000
GGAG	chr14:102466286-102466523(+)$1	237	137	141	12.0000
GGAG	chr1:23346228-23346490(+)$1	262	28	32	12.0000
GGAG	chr3:184044947-184045222(+)$1	275	55	59	12.0000
GGAG	chr19:50912698-50912945(+)$1	247	18	22	12.0000
GGAG	chr8:48801564-48801780(-)$1	216	84	88	12.0000
GGAG	chr15:72501072-72501331(-)$1	259	118	122	12.0000
GGAG	chr21:34922869-34923094(+)$1	225	56	60	12.0000
GGAG	chr6:31752094-31752359(-)$1	265	91	95	12.0000
GGAG	chr17:80049341-80049578(-)$1	237	32	36	12.0000
GGAG	chr8:144995658-144995897(-)$1	239	98	102	12.0000
GGAG	chr14:102500613-102500841(+)$1	228	19	23	12.0000
GGAG	chr1:19443621-19443853(-)$1	232	124	128	12.0000
GGAG	chr8:144994464-144994716(-)$1	252	108	112	12.0000
GGAG	chr7:138793828-138794122(-)$1	294	56	60	12.0000
GGAG	chr9:35719959-35720180(-)$1	221	6	10	12.0000
GGAG	chr9:35714137-35714390(-)$1	253	191	195	12.0000
GGAG	chr6:31608556-31608814(-)$1	258	179	183	12.0000
GGAG	chr3:184046627-184046879(+)$1	252	1	5	12.0000
GGAG	chr7:5632673-5632941(+)$1	268	37	41	12.0000
GGAG	chr11:62489497-62489745(-)$1	248	48	52	12.0000
GGAG	chr17:42930784-42931072(-)$1	288	115	119	12.0000
GGAG	chr10:71158333-71158609(+)$1	276	124	128	12.0000
GGAG	chr11:65347568-65347814(+)$1	246	147	151	12.0000
GGAG	chr8:22472875-22473204(+)$1	329	17	21	12.0000
GGAG	chr19:10443864-10444103(-)$1	239	0	4	12.0000
GGAG	chr2:96963137-96963374(-)$1	237	129	133	12.0000
GGAG	chr19:34919291-34919547(+)$1	256	72	76	12.0000
GGAG	chr3:184038379-184038597(+)$1	218	62	66	12.0000
GGAG	chr19:10270417-10270677(-)$1	260	34	38	12.0000
GGAG	chr12:6708990-6709229(-)$1	239	50	54	12.0000
GGAG	chr8:145006199-145006441(-)$1	242	50	54	12.0000
GGAG	chr19:8550736-8550991(+)$1	255	3	7	12.0000
GGAG	chr19:39207693-39207949(+)$1	256	37	41	12.0000
GGAG	chrX:153596109-153596311(-)$1	202	121	125	12.0000
GGAG	chr17:7399688-7399926(+)$1	238	3	7	12.0000
GGAG	chr17:80044211-80044427(-)$1	216	153	157	12.0000
GGAG	chr11:65824670-65824945(+)$1	275	116	120	12.0000
GGAG	chr16:85695100-85695416(+)$1	316	110	114	12.0000
GGAG	chr9:71850967-71851223(+)$1	256	79	83	12.0000
GGAG	chr17:1559899-1560146(-)$1	247	45	49	12.0000
GGAG	chr21:30445750-30446062(-)$1	312	33	37	12.0000
GGAG	chr18:12376867-12377114(-)$1	247	206	210	12.0000
GGAG	chr12:56998290-56998595(-)$1	305	29	33	12.0000
GGAG	chr1:160261801-160262038(-)$1	237	158	162	12.0000
GGAG	chr1:40529934-40530143(+)$1	209	26	30	12.0000
GGAG	chr1:19427930-19428178(-)$1	248	1	5	12.0000
GGAG	chr16:85699691-85699947(+)$1	256	5	9	12.0000
GGAG	chr19:14574577-14574872(+)$1	295	4	8	12.0000
GGAG	chr3:47887723-47887970(+)$1	247	65	69	12.0000
GGAG	chr11:122929239-122929452(-)$1	213	117	121	12.0000
GGAG	chrX:53245207-53245426(-)$1	219	205	209	12.0000
GGAG	chr9:35707312-35707539(-)$1	227	77	81	12.0000
GGAG	chr19:39218488-39218723(+)$1	235	123	127	12.0000
GGAG	chr11:62303364-62303663(-)$1	299	0	4	12.0000
GGAG	chr19:59057097-59057311(+)$1	214	80	84	12.0000
GGAG	chr8:48872532-48872814(-)$1	282	110	114	12.0000
GGAG	chr11:63963016-63963315(+)$1	299	32	36	12.0000
GGAG	chr21:47693236-47693473(-)$1	237	24	28	12.0000

#otherMatches

#Struct PSSM
DDDD	chr16:67267543-67267819(-)$1	276	134	138	12.0000
:FFF	chr19:2438271-2438517(-)$1	246	0	4	12.0000
CCKK	chr19:42396696-42396940(+)$1	244	29	33	12.0000
bppp	chr9:35711558-35711807(-)$1	249	194	198	12.0000
ffnn	chr17:80042100-80042322(-)$1	222	6	10	12.0000
gg[d	chr21:38567986-38568277(+)$1	291	123	127	12.0000
2eee	chr19:39205011-39205236(+)$1	225	45	49	12.0000
bb::	chr8:144940615-144940867(-)$1	252	24	28	12.0000
FFFF	chr17:40034258-40034506(-)$1	248	4	8	12.0000
HHHH	chr14:65239263-65239531(-)$1	268	29	33	12.0000
bb::	chr9:35713117-35713339(-)$1	222	46	50	12.0000
sfff	chr14:102486187-102486484(+)$1	297	41	45	12.0000
ii]c	chr12:124197008-124197324(+)$1	316	56	60	12.0000
666d	chr15:90931443-90931729(+)$1	286	57	61	12.0000
BB{C	chr1:193028649-193028930(+)$1	281	29	33	12.0000
22ii	chr12:57894056-57894380(+)$1	324	107	111	12.0000
GG}D	chrX:53574886-53575142(-)$1	256	206	210	12.0000
FFFF	chrX:77369193-77369467(+)$1	274	6	10	12.0000
A}BB	chr17:1556860-1557073(-)$1	213	162	166	12.0000
b[bb	chr12:116714827-116715086(-)$1	259	142	146	12.0000
dd]b	chr1:67895825-67896071(-)$1	246	61	65	12.0000
ffff	chr5:179247961-179248264(+)$1	303	13	17	12.0000
mmcc	chr19:59060901-59061117(+)$1	216	202	206	12.0000
{EEE	chr2:54858440-54858738(+)$1	298	4	8	12.0000
gggg	chr11:62490990-62491275(-)$1	285	47	51	12.0000
gg!!	chr2:48010498-48010732(+)$1	234	22	26	12.0000
dddd	chr6:31760540-31760771(-)$1	231	189	193	12.0000
ddFF	chr17:80039388-80039633(-)$1	245	26	30	12.0000
cc[=	chrX:153589709-153589959(-)$1	250	43	47	12.0000
BBBB	chr3:184016989-184017286(+)$1	297	61	65	12.0000
EEII	chr17:1578386-1578636(-)$1	250	28	32	12.0000
c22b	chr12:56639060-56639342(-)$1	282	210	214	12.0000
DD::	chr22:23610494-23610790(+)$1	296	5	9	12.0000
DDD{	chr3:12977059-12977362(-)$1	303	100	104	12.0000
ffff	chr14:102466286-102466523(+)$1	237	137	141	12.0000
ddqq	chr1:23346228-23346490(+)$1	262	28	32	12.0000
bb!!	chr3:184044947-184045222(+)$1	275	55	59	12.0000
cccc	chr19:50912698-50912945(+)$1	247	18	22	12.0000
ff]c	chr8:48801564-48801780(-)$1	216	84	88	12.0000
iiii	chr15:72501072-72501331(-)$1	259	118	122	12.0000
fffd	chr21:34922869-34923094(+)$1	225	56	60	12.0000
dddd	chr6:31752094-31752359(-)$1	265	91	95	12.0000
qqcc	chr17:80049341-80049578(-)$1	237	32	36	12.0000
cccc	chr8:144995658-144995897(-)$1	239	98	102	12.0000
EE:i	chr14:102500613-102500841(+)$1	228	19	23	12.0000
d!!c	chr1:19443621-19443853(-)$1	232	124	128	12.0000
5555	chr8:144994464-144994716(-)$1	252	108	112	12.0000
d!!g	chr7:138793828-138794122(-)$1	294	56	60	12.0000
eeee	chr9:35719959-35720180(-)$1	221	6	10	12.0000
ccc[	chr9:35714137-35714390(-)$1	253	191	195	12.0000
gggg	chr6:31608556-31608814(-)$1	258	179	183	12.0000
iiii	chr3:184046627-184046879(+)$1	252	1	5	12.0000
ee::	chr7:5632673-5632941(+)$1	268	37	41	12.0000
hhhh	chr11:62489497-62489745(-)$1	248	48	52	12.0000
!a[h	chr17:42930784-42931072(-)$1	288	115	119	12.0000
a]cc	chr10:71158333-71158609(+)$1	276	124	128	12.0000
hhhh	chr11:65347568-65347814(+)$1	246	147	151	12.0000
CC{D	chr8:22472875-22473204(+)$1	329	17	21	12.0000
:::D	chr19:10443864-10444103(-)$1	239	0	4	12.0000
hhhh	chr2:96963137-96963374(-)$1	237	129	133	12.0000
]bb4	chr19:34919291-34919547(+)$1	256	72	76	12.0000
JJJJ	chr3:184038379-184038597(+)$1	218	62	66	12.0000
llff	chr19:10270417-10270677(-)$1	260	34	38	12.0000
gHHH	chr12:6708990-6709229(-)$1	239	50	54	12.0000
bb]h	chr8:145006199-145006441(-)$1	242	50	54	12.0000
:::b	chr19:8550736-8550991(+)$1	255	3	7	12.0000
ggg!	chr19:39207693-39207949(+)$1	256	37	41	12.0000
AKKC	chrX:153596109-153596311(-)$1	202	121	125	12.0000
ee[f	chr17:7399688-7399926(+)$1	238	3	7	12.0000
====	chr17:80044211-80044427(-)$1	216	153	157	12.0000
bb]d	chr11:65824670-65824945(+)$1	275	116	120	12.0000
hh!!	chr16:85695100-85695416(+)$1	316	110	114	12.0000
gggg	chr9:71850967-71851223(+)$1	256	79	83	12.0000
ffff	chr17:1559899-1560146(-)$1	247	45	49	12.0000
ffff	chr21:30445750-30446062(-)$1	312	33	37	12.0000
mmmc	chr18:12376867-12377114(-)$1	247	206	210	12.0000
gggF	chr12:56998290-56998595(-)$1	305	29	33	12.0000
iiii	chr1:160261801-160262038(-)$1	237	158	162	12.0000
dqqq	chr1:40529934-40530143(+)$1	209	26	30	12.0000
gggg	chr1:19427930-19428178(-)$1	248	1	5	12.0000
BB{E	chr16:85699691-85699947(+)$1	256	5	9	12.0000
D{BB	chr19:14574577-14574872(+)$1	295	4	8	12.0000
cc]e	chr3:47887723-47887970(+)$1	247	65	69	12.0000
oooo	chr11:122929239-122929452(-)$1	213	117	121	12.0000
FFCC	chrX:53245207-53245426(-)$1	219	205	209	12.0000
ff[a	chr9:35707312-35707539(-)$1	227	77	81	12.0000
CC{B	chr19:39218488-39218723(+)$1	235	123	127	12.0000
dddd	chr11:62303364-62303663(-)$1	299	0	4	12.0000
oocc	chr19:59057097-59057311(+)$1	214	80	84	12.0000
II}E	chr8:48872532-48872814(-)$1	282	110	114	12.0000
FFdd	chr11:63963016-63963315(+)$1	299	32	36	12.0000
seee	chr21:47693236-47693473(-)$1	237	24	28	12.0000

#DB
))))	chr16:67267543-67267819(-)$1	1	134	138	12.0000
.(((	chr19:2438271-2438517(-)$1	1	0	4	12.0000
((..	chr19:42396696-42396940(+)$1	1	29	33	12.0000
(...	chr9:35711558-35711807(-)$1	1	194	198	12.0000
((..	chr17:80042100-80042322(-)$1	1	6	10	12.0000
((.(	chr21:38567986-38568277(+)$1	1	123	127	12.0000
.)))	chr19:39205011-39205236(+)$1	1	45	49	12.0000
))..	chr8:144940615-144940867(-)$1	1	24	28	12.0000
((((	chr17:40034258-40034506(-)$1	1	4	8	12.0000
((((	chr14:65239263-65239531(-)$1	1	29	33	12.0000
))..	chr9:35713117-35713339(-)$1	1	46	50	12.0000
.)))	chr14:102486187-102486484(+)$1	1	41	45	12.0000
)).)	chr12:124197008-124197324(+)$1	1	56	60	12.0000
...)	chr15:90931443-90931729(+)$1	1	57	61	12.0000
((.(	chr1:193028649-193028930(+)$1	1	29	33	12.0000
..))	chr12:57894056-57894380(+)$1	1	107	111	12.0000
)).)	chrX:53574886-53575142(-)$1	1	206	210	12.0000
((((	chrX:77369193-77369467(+)$1	1	6	10	12.0000
).))	chr17:1556860-1557073(-)$1	1	162	166	12.0000
(.((	chr12:116714827-116715086(-)$1	1	142	146	12.0000
)).)	chr1:67895825-67896071(-)$1	1	61	65	12.0000
))))	chr5:179247961-179248264(+)$1	1	13	17	12.0000
..))	chr19:59060901-59061117(+)$1	1	202	206	12.0000
.(((	chr2:54858440-54858738(+)$1	1	4	8	12.0000
((((	chr11:62490990-62491275(-)$1	1	47	51	12.0000
((..	chr2:48010498-48010732(+)$1	1	22	26	12.0000
))))	chr6:31760540-31760771(-)$1	1	189	193	12.0000
))((	chr17:80039388-80039633(-)$1	1	26	30	12.0000
((.(	chrX:153589709-153589959(-)$1	1	43	47	12.0000
((((	chr3:184016989-184017286(+)$1	1	61	65	12.0000
((((	chr17:1578386-1578636(-)$1	1	28	32	12.0000
)..)	chr12:56639060-56639342(-)$1	1	210	214	12.0000
((..	chr22:23610494-23610790(+)$1	1	5	9	12.0000
(((.	chr3:12977059-12977362(-)$1	1	100	104	12.0000
((((	chr14:102466286-102466523(+)$1	1	137	141	12.0000
((..	chr1:23346228-23346490(+)$1	1	28	32	12.0000
((..	chr3:184044947-184045222(+)$1	1	55	59	12.0000
))))	chr19:50912698-50912945(+)$1	1	18	22	12.0000
)).)	chr8:48801564-48801780(-)$1	1	84	88	12.0000
))))	chr15:72501072-72501331(-)$1	1	118	122	12.0000
)))(	chr21:34922869-34923094(+)$1	1	56	60	12.0000
((((	chr6:31752094-31752359(-)$1	1	91	95	12.0000
..))	chr17:80049341-80049578(-)$1	1	32	36	12.0000
))))	chr8:144995658-144995897(-)$1	1	98	102	12.0000
((.(	chr14:102500613-102500841(+)$1	1	19	23	12.0000
(..(	chr1:19443621-19443853(-)$1	1	124	128	12.0000
....	chr8:144994464-144994716(-)$1	1	108	112	12.0000
(..(	chr7:138793828-138794122(-)$1	1	56	60	12.0000
((((	chr9:35719959-35720180(-)$1	1	6	10	12.0000
(((.	chr9:35714137-35714390(-)$1	1	191	195	12.0000
))))	chr6:31608556-31608814(-)$1	1	179	183	12.0000
((((	chr3:184046627-184046879(+)$1	1	1	5	12.0000
))..	chr7:5632673-5632941(+)$1	1	37	41	12.0000
((((	chr11:62489497-62489745(-)$1	1	48	52	12.0000
.(.(	chr17:42930784-42931072(-)$1	1	115	119	12.0000
).))	chr10:71158333-71158609(+)$1	1	124	128	12.0000
((((	chr11:65347568-65347814(+)$1	1	147	151	12.0000
((.(	chr8:22472875-22473204(+)$1	1	17	21	12.0000
...(	chr19:10443864-10444103(-)$1	1	0	4	12.0000
))))	chr2:96963137-96963374(-)$1	1	129	133	12.0000
.)).	chr19:34919291-34919547(+)$1	1	72	76	12.0000
((((	chr3:184038379-184038597(+)$1	1	62	66	12.0000
..))	chr19:10270417-10270677(-)$1	1	34	38	12.0000
)(((	chr12:6708990-6709229(-)$1	1	50	54	12.0000
)).)	chr8:145006199-145006441(-)$1	1	50	54	12.0000
...(	chr19:8550736-8550991(+)$1	1	3	7	12.0000
(((.	chr19:39207693-39207949(+)$1	1	37	41	12.0000
(..(	chrX:153596109-153596311(-)$1	1	121	125	12.0000
((.(	chr17:7399688-7399926(+)$1	1	3	7	12.0000
))))	chr17:80044211-80044427(-)$1	1	153	157	12.0000
)).)	chr11:65824670-65824945(+)$1	1	116	120	12.0000
((..	chr16:85695100-85695416(+)$1	1	110	114	12.0000
))))	chr9:71850967-71851223(+)$1	1	79	83	12.0000
((((	chr17:1559899-1560146(-)$1	1	45	49	12.0000
((((	chr21:30445750-30446062(-)$1	1	33	37	12.0000
...)	chr18:12376867-12377114(-)$1	1	206	210	12.0000
)))(	chr12:56998290-56998595(-)$1	1	29	33	12.0000
((((	chr1:160261801-160262038(-)$1	1	158	162	12.0000
(...	chr1:40529934-40530143(+)$1	1	26	30	12.0000
((((	chr1:19427930-19428178(-)$1	1	1	5	12.0000
((.(	chr16:85699691-85699947(+)$1	1	5	9	12.0000
(.((	chr19:14574577-14574872(+)$1	1	4	8	12.0000
)).)	chr3:47887723-47887970(+)$1	1	65	69	12.0000
....	chr11:122929239-122929452(-)$1	1	117	121	12.0000
))))	chrX:53245207-53245426(-)$1	1	205	209	12.0000
((.(	chr9:35707312-35707539(-)$1	1	77	81	12.0000
((.(	chr19:39218488-39218723(+)$1	1	123	127	12.0000
((((	chr11:62303364-62303663(-)$1	1	0	4	12.0000
..))	chr19:59057097-59057311(+)$1	1	80	84	12.0000
)).)	chr8:48872532-48872814(-)$1	1	110	114	12.0000
((((	chr11:63963016-63963315(+)$1	1	32	36	12.0000
.)))	chr21:47693236-47693473(-)$1	1	24	28	12.0000

#PSSM
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	

#score	1104.0000000000007
#seq	92
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_transcript_m3_run2.nuc.txt

#NT
GCCCCGC	chr16:2802591-2802851(+)$1	260	5	12	14.2075
GCCGCGC	chr10:17271244-17271509(+)$1	265	73	80	18.2641
GCCGCGC	chr20:62152052-62152310(+)$1	258	204	211	18.2641
gccgcgc	chr17:80055905-80056199(-)$1	294	125	132	18.2641
GCCGCGC	chr10:17271178-17271433(+)$1	255	139	146	18.2641
GCCGCGC	chr16:204184-204454(+)$1	270	116	123	18.2641
gccgcgc	chr20:57466518-57466792(+)$1	274	235	242	18.2641
gccgcgc	chr2:55276878-55277193(-)$1	315	255	262	18.2641
GCCGCGC	chr7:75931979-75932258(+)$1	279	254	261	18.2641
GCCGCCC	chrX:152953601-152953886(+)$1	285	93	100	14.5849
GCCGGGC	chr2:55276993-55277273(-)$1	280	17	24	14.7735
gccgccc	chr12:53845876-53846170(+)$1	294	95	102	14.5849
GCCGCUC	chr5:70883206-70883427(+)$1	221	18	25	14.3962
GCCUCGC	chr2:97541639-97542011(-)$1	372	225	232	14.0188
GCCGCCC	chr19:3983012-3983303(-)$1	291	262	269	14.5849
gccgcgc	chr12:120972416-120972682(+)$1	266	150	157	18.2641
GCCGUGC	chr8:101733713-101733973(-)$1	260	151	158	14.8679
GCCCCGC	chr1:109643020-109643250(+)$1	230	0	7	14.2075
GCCGAGC	chr16:30081060-30081278(+)$1	218	198	205	14.6792
gcUGCGC	chr4:53578690-53578915(+)$1	225	205	212	13.6415
GCUGCGC	chr16:30080829-30081092(+)$1	263	133	140	13.6415
GCCCCGC	chr19:3985312-3985559(-)$1	247	19	26	14.2075
GCCGCUC	chr13:45915174-45915417(-)$1	243	130	137	14.3962
GCCGUGC	chr8:101733773-101734042(-)$1	269	220	227	14.8679
GCCGCCC	chr2:232573166-232573418(+)$1	252	25	32	14.5849
GCCGCGC	chr6:53213554-53213819(-)$1	265	11	18	18.2641
GCCGCGC	chr7:75932086-75932314(+)$1	228	147	154	18.2641
GCCGGGC	chrX:152953540-152953801(+)$1	261	5	12	14.7735
GCCGCGC	chr16:204265-204551(+)$1	286	35	42	18.2641
GCCGCGC	chr4:53578729-53578935(+)$1	206	184	191	18.2641
GCCGAGC	chr16:2802651-2802946(+)$1	295	284	291	14.6792
GCCGCGC	chr11:809866-810124(+)$1	258	36	43	18.2641
gccgcgc	chr11:64001965-64002310(+)$1	345	237	244	18.2641
GCCGUGC	chr3:169482498-169482790(-)$1	292	14	21	14.8679
GCCCCGC	chr1:35658087-35658361(-)$1	274	57	64	14.2075
GCCGGGC	chrX:152953477-152953693(+)$1	216	68	75	14.7735
gccgcgc	chr16:29818267-29818520(+)$1	253	31	38	18.2641
GCCGUGC	chr19:17973296-17973515(+)$1	219	195	202	14.8679
GCCGCGC	chr16:88870214-88870492(+)$1	278	7	14	18.2641
GCCGGGC	chr2:55277114-55277355(-)$1	241	99	106	14.7735
GCCGCGC	chr7:5569062-5569360(-)$1	298	87	94	18.2641
GCCUCGC	chr12:53845991-53846259(+)$1	268	154	161	14.0188
GCCGAGC	chr16:30081117-30081420(+)$1	303	141	148	14.6792
gccgcgc	chr11:61734777-61735183(-)$1	406	240	247	18.2641
gccgccc	chr19:6424621-6424892(-)$1	271	221	228	14.5849
gccgcgc	chr1:156721254-156721539(-)$1	285	171	178	18.2641
GCCGCGC	chr6:26056513-26056763(-)$1	250	137	144	18.2641
gccgcgc	chr19:50354486-50354835(+)$1	349	5	12	18.2641
GCCGcgc	chr2:70314566-70314898(+)$1	332	74	81	18.2641
GCCGCUC	chr5:70883202-70883406(+)$1	204	22	29	14.3962
GCCGUGC	chr19:17973315-17973538(+)$1	223	176	183	14.8679
GCCGCAC	chr6:37138029-37138340(+)$1	311	51	58	14.2075

#otherMatches

#Struct PSSM
bb]dddd	chr1:32479388-32479656(+)$1	268	229	236	18.2641
CCCDDDD	chr16:2802591-2802851(+)$1	260	5	12	14.2075
DDDD{DD	chr10:17271244-17271509(+)$1	265	73	80	18.2641
EEBBYYI	chr20:62152052-62152310(+)$1	258	204	211	18.2641
dddd]bb	chr17:80055905-80056199(-)$1	294	125	132	18.2641
mmmcccc	chr10:17271178-17271433(+)$1	255	139	146	18.2641
cc[ccc[	chr16:204184-204454(+)$1	270	116	123	18.2641
cc[ccca	chr20:57466518-57466792(+)$1	274	235	242	18.2641
5ffffff	chr2:55276878-55277193(-)$1	315	255	262	18.2641
CCeeeee	chr7:75931979-75932258(+)$1	279	254	261	18.2641
bb:eeee	chrX:152953601-152953886(+)$1	285	93	100	14.5849
mmfffff	chr2:55276993-55277273(-)$1	280	17	24	14.7735
qqqbb::	chr12:53845876-53846170(+)$1	294	95	102	14.5849
DD{DDDD	chr5:70883206-70883427(+)$1	221	18	25	14.3962
gggggga	chr2:97541639-97542011(-)$1	372	225	232	14.0188
ppppppd	chr19:3983012-3983303(-)$1	291	262	269	14.5849
bb]ccc]	chr12:120972416-120972682(+)$1	266	150	157	18.2641
CC}DDDD	chr8:101733713-101733973(-)$1	260	151	158	14.8679
GGGGGGG	chr1:109643020-109643250(+)$1	230	0	7	14.2075
ddd!!bb	chr16:30081060-30081278(+)$1	218	198	205	14.6792
ggggg]e	chr4:53578690-53578915(+)$1	225	205	212	13.6415
f!!dddd	chr16:30080829-30081092(+)$1	263	133	140	13.6415
ddd]ccc	chr19:3985312-3985559(-)$1	247	19	26	14.2075
llldddd	chr13:45915174-45915417(-)$1	243	130	137	14.3962
CC}DDDD	chr8:101733773-101734042(-)$1	269	220	227	14.8679
c[dddd^	chr2:232573166-232573418(+)$1	252	25	32	14.5849
DDDeeee	chr6:53213554-53213819(-)$1	265	11	18	18.2641
d[bbmmm	chr7:75932086-75932314(+)$1	228	147	154	18.2641
BBEEEEE	chrX:152953540-152953801(+)$1	261	5	12	14.7735
cc[ccc[	chr16:204265-204551(+)$1	286	35	42	18.2641
[ddddnn	chr4:53578729-53578935(+)$1	206	184	191	18.2641
EEEZZZE	chr16:2802651-2802946(+)$1	295	284	291	14.6792
GGGGDDD	chr11:809866-810124(+)$1	258	36	43	18.2641
gg!!eee	chr11:64001965-64002310(+)$1	345	237	244	18.2641
"""a[ff	chr3:169482498-169482790(-)$1	292	14	21	14.8679
cc"""ff	chr1:35658087-35658361(-)$1	274	57	64	14.2075
bb[cccm	chrX:152953477-152953693(+)$1	216	68	75	14.7735
e22eeee	chr16:29818267-29818520(+)$1	253	31	38	18.2641
rrrrr==	chr19:17973296-17973515(+)$1	219	195	202	14.8679
cc[dddd	chr16:88870214-88870492(+)$1	278	7	14	18.2641
mmfffff	chr2:55277114-55277355(-)$1	241	99	106	14.7735
blllbb]	chr7:5569062-5569360(-)$1	298	87	94	18.2641
cclllcc	chr12:53845991-53846259(+)$1	268	154	161	14.0188
!bb!!dd	chr16:30081117-30081420(+)$1	303	141	148	14.6792
IIIIIbb	chr11:61734777-61735183(-)$1	406	240	247	18.2641
accc]a]	chr19:6424621-6424892(-)$1	271	221	228	14.5849
!dddd[d	chr1:156721254-156721539(-)$1	285	171	178	18.2641
mmmccc6	chr6:26056513-26056763(-)$1	250	137	144	18.2641
E{BBbb[	chr19:50354486-50354835(+)$1	349	5	12	18.2641
bb[ccca	chr2:70314566-70314898(+)$1	332	74	81	18.2641
DD{DDDD	chr5:70883202-70883406(+)$1	204	22	29	14.3962
rrrrr==	chr19:17973315-17973538(+)$1	223	176	183	14.8679
IIIIII{	chr6:37138029-37138340(+)$1	311	51	58	14.2075

#DB
)).))))	chr1:32479388-32479656(+)$1	1	229	236	18.2641
(((((((	chr16:2802591-2802851(+)$1	1	5	12	14.2075
((((.((	chr10:17271244-17271509(+)$1	1	73	80	18.2641
))))..)	chr20:62152052-62152310(+)$1	1	204	211	18.2641
)))).))	chr17:80055905-80056199(-)$1	1	125	132	18.2641
...))))	chr10:17271178-17271433(+)$1	1	139	146	18.2641
((.(((.	chr16:204184-204454(+)$1	1	116	123	18.2641
((.((((	chr20:57466518-57466792(+)$1	1	235	242	18.2641
.))))))	chr2:55276878-55277193(-)$1	1	255	262	18.2641
))(((((	chr7:75931979-75932258(+)$1	1	254	261	18.2641
)).((((	chrX:152953601-152953886(+)$1	1	93	100	14.5849
..)))))	chr2:55276993-55277273(-)$1	1	17	24	14.7735
...))..	chr12:53845876-53846170(+)$1	1	95	102	14.5849
((.((((	chr5:70883206-70883427(+)$1	1	18	25	14.3962
)))))))	chr2:97541639-97542011(-)$1	1	225	232	14.0188
......)	chr19:3983012-3983303(-)$1	1	262	269	14.5849
)).))).	chr12:120972416-120972682(+)$1	1	150	157	18.2641
)).))))	chr8:101733713-101733973(-)$1	1	151	158	14.8679
(((((((	chr1:109643020-109643250(+)$1	1	0	7	14.2075
(((..((	chr16:30081060-30081278(+)$1	1	198	205	14.6792
))))).)	chr4:53578690-53578915(+)$1	1	205	212	13.6415
(..((((	chr16:30080829-30081092(+)$1	1	133	140	13.6415
))).)))	chr19:3985312-3985559(-)$1	1	19	26	14.2075
...))))	chr13:45915174-45915417(-)$1	1	130	137	14.3962
)).))))	chr8:101733773-101734042(-)$1	1	220	227	14.8679
(.((((.	chr2:232573166-232573418(+)$1	1	25	32	14.5849
(((((((	chr6:53213554-53213819(-)$1	1	11	18	18.2641
(.((...	chr7:75932086-75932314(+)$1	1	147	154	18.2641
(((((((	chrX:152953540-152953801(+)$1	1	5	12	14.7735
((.(((.	chr16:204265-204551(+)$1	1	35	42	18.2641
.((((..	chr4:53578729-53578935(+)$1	1	184	191	18.2641
)))...)	chr16:2802651-2802946(+)$1	1	284	291	14.6792
(((((((	chr11:809866-810124(+)$1	1	36	43	18.2641
((..(((	chr11:64001965-64002310(+)$1	1	237	244	18.2641
...(.((	chr3:169482498-169482790(-)$1	1	14	21	14.8679
((...((	chr1:35658087-35658361(-)$1	1	57	64	14.2075
((.(((.	chrX:152953477-152953693(+)$1	1	68	75	14.7735
)..))))	chr16:29818267-29818520(+)$1	1	31	38	18.2641
.....))	chr19:17973296-17973515(+)$1	1	195	202	14.8679
((.((((	chr16:88870214-88870492(+)$1	1	7	14	18.2641
..)))))	chr2:55277114-55277355(-)$1	1	99	106	14.7735
(...)).	chr7:5569062-5569360(-)$1	1	87	94	18.2641
((...))	chr12:53845991-53846259(+)$1	1	154	161	14.0188
.((..((	chr16:30081117-30081420(+)$1	1	141	148	14.6792
)))))((	chr11:61734777-61735183(-)$1	1	240	247	18.2641
)))).).	chr19:6424621-6424892(-)$1	1	221	228	14.5849
.((((.(	chr1:156721254-156721539(-)$1	1	171	178	18.2641
...))).	chr6:26056513-26056763(-)$1	1	137	144	18.2641
(.((((.	chr19:50354486-50354835(+)$1	1	5	12	18.2641
((.((((	chr2:70314566-70314898(+)$1	1	74	81	18.2641
((.((((	chr5:70883202-70883406(+)$1	1	22	29	14.3962
.....))	chr19:17973315-17973538(+)$1	1	176	183	14.8679
((((((.	chr6:37138029-37138340(+)$1	1	51	58	14.2075

#PSSM
G : 0.77	g : 0.22	
C : 0.77	c : 0.22	
C : 0.75	c : 0.20	U : 0.03	
G : 0.67	g : 0.20	C : 0.07	U : 0.03	
C : 0.54	c : 0.22	U : 0.09	G : 0.07	A : 0.05	
G : 0.64	g : 0.18	C : 0.05	U : 0.05	c : 0.03	A : 0.01	
C : 0.77	c : 0.22	

#score	858.283018867924
#seq	53
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_transcript_m3_run2.nuc.txt

#NT
AGAAGG	chr19:2795997-2796248(+)$1	251	91	97	15.2916
AGAAGG	chr19:46878800-46879096(+)$1	296	130	136	15.2916
AGAAGA	chr1:67425268-67425506(+)$1	238	103	109	13.8333
AGAAGG	chr16:2807411-2807666(+)$1	255	117	123	15.2916
AGAAGG	chr1:41474366-41474665(+)$1	299	191	197	15.2916
AGAAGG	chr4:17826950-17827198(+)$1	248	229	235	15.2916
AGAAGG	chr16:70602845-70603117(+)$1	272	194	200	15.2916
AGAAGG	chr1:28534808-28535018(-)$1	210	119	125	15.2916
AGAAGC	chr9:115950027-115950279(-)$1	252	55	61	14.1458
AGAAGG	chr17:80146074-80146395(-)$1	321	129	135	15.2916
AGAAGG	chr6:28116401-28116638(+)$1	237	207	213	15.2916
AGAAGG	chr18:12367198-12367477(-)$1	279	198	204	15.2916
agaagc	chr12:131288821-131289184(-)$1	363	27	33	14.1458
AGAAGA	chr12:104379278-104379514(+)$1	236	111	117	13.8333
AGAAGU	chr6:160467512-160467766(+)$1	254	77	83	13.7291
AGAAGG	chr4:120418897-120419155(+)$1	258	11	17	15.2916
AGAAGA	chr2:216992180-216992416(+)$1	236	137	143	13.8333
AGAAGU	chr11:13749002-13749332(+)$1	330	167	173	13.7291
AGAAGC	chr11:94587014-94587322(+)$1	308	90	96	14.1458
AGAAGG	chr15:44092862-44093081(+)$1	219	88	94	15.2916
AGAAGU	chr18:2595455-2595693(+)$1	238	19	25	13.7291
AGAAGU	chr7:149152176-149152421(-)$1	245	141	147	13.7291
AGAAGG	chr15:28499470-28499759(-)$1	289	120	126	15.2916
AGAAGU	chr3:154032886-154033171(-)$1	285	167	173	13.7291
AGAAGG	chrX:129149931-129150219(+)$1	288	187	193	15.2916
AGAAGA	chr1:24972403-24972608(+)$1	205	111	117	13.8333
AGAAGG	chr3:14200017-14200291(-)$1	274	137	143	15.2916
AGAAGC	chr1:168013768-168013998(+)$1	230	52	58	14.1458
AGAAGA	chr12:112620879-112621102(-)$1	223	142	148	13.8333
AGAAGC	chr12:93169703-93169961(-)$1	258	125	131	14.1458
AGAAGG	chr9:127998873-127999080(-)$1	207	103	109	15.2916
AGAAGG	chr1:222827955-222828237(+)$1	282	158	164	15.2916
AGAAGC	chr1:204511824-204512171(+)$1	347	194	200	14.1458
AGAAGG	chr9:131258284-131258515(+)$1	231	90	96	15.2916
AGAAGU	chr8:100155246-100155494(+)$1	248	15	21	13.7291
AGAAGA	chr14:104123782-104124066(+)$1	284	233	239	13.8333
AGAAGC	chr4:68372430-68372701(-)$1	271	56	62	14.1458
agaaga	chr11:65267173-65267374(+)$1	201	18	24	13.8333
AGAAGG	chr19:11169366-11169616(+)$1	250	140	146	15.2916
AGAAGG	chr15:44806882-44807143(+)$1	261	102	108	15.2916
AGAAGG	chr2:209200667-209200916(+)$1	249	107	113	15.2916
AGAAGC	chr17:48797010-48797238(+)$1	228	147	153	14.1458
AGAAGC	chr19:16653064-16653335(-)$1	271	39	45	14.1458
AGAAGA	chr9:128001214-128001439(-)$1	225	38	44	13.8333
AGAAGG	chr5:34938882-34939137(+)$1	255	163	169	15.2916
AGAAGU	chr3:184040317-184040553(+)$1	236	180	186	13.7291
AGAAGC	chr5:39202272-39202531(-)$1	259	67	73	14.1458

#otherMatches

#Struct PSSM
!bb[dd	chr1:16269038-16269287(-)$1	249	57	63	14.1458
eeeBB{	chr19:2795997-2796248(+)$1	251	91	97	15.2916
IIIIII	chr19:46878800-46879096(+)$1	296	130	136	15.2916
::::::	chr1:67425268-67425506(+)$1	238	103	109	13.8333
JJJJJJ	chr16:2807411-2807666(+)$1	255	117	123	15.2916
uuuuuu	chr1:41474366-41474665(+)$1	299	191	197	15.2916
}GGGGG	chr4:17826950-17827198(+)$1	248	229	235	15.2916
d333ff	chr16:70602845-70603117(+)$1	272	194	200	15.2916
"a[ccc	chr1:28534808-28535018(-)$1	210	119	125	15.2916
ccc"""	chr9:115950027-115950279(-)$1	252	55	61	14.1458
::::::	chr17:80146074-80146395(-)$1	321	129	135	15.2916
dd[a[a	chr6:28116401-28116638(+)$1	237	207	213	15.2916
dddd22	chr18:12367198-12367477(-)$1	279	198	204	15.2916
{EEEEE	chr12:131288821-131289184(-)$1	363	27	33	14.1458
ffffff	chr12:104379278-104379514(+)$1	236	111	117	13.8333
ffffff	chr6:160467512-160467766(+)$1	254	77	83	13.7291
"""ddd	chr4:120418897-120419155(+)$1	258	11	17	15.2916
^^^^^^	chr2:216992180-216992416(+)$1	236	137	143	13.8333
ee]ddd	chr11:13749002-13749332(+)$1	330	167	173	13.7291
:::ddd	chr11:94587014-94587322(+)$1	308	90	96	14.1458
cqqqqq	chr15:44092862-44093081(+)$1	219	88	94	15.2916
:::ddd	chr18:2595455-2595693(+)$1	238	19	25	13.7291
c:::ee	chr7:149152176-149152421(-)$1	245	141	147	13.7291
d22ccc	chr15:28499470-28499759(-)$1	289	120	126	15.2916
:::::d	chr3:154032886-154033171(-)$1	285	167	173	13.7291
h55555	chrX:129149931-129150219(+)$1	288	187	193	15.2916
cc[bbl	chr1:24972403-24972608(+)$1	205	111	117	13.8333
CLLLCC	chr3:14200017-14200291(-)$1	274	137	143	15.2916
ddd[ff	chr1:168013768-168013998(+)$1	230	52	58	14.1458
ddddmm	chr12:112620879-112621102(-)$1	223	142	148	13.8333
odddd:	chr12:93169703-93169961(-)$1	258	125	131	14.1458
dd:::d	chr9:127998873-127999080(-)$1	207	103	109	15.2916
eecccb	chr1:222827955-222828237(+)$1	282	158	164	15.2916
hhhh]a	chr1:204511824-204512171(+)$1	347	194	200	14.1458
b[abb[	chr9:131258284-131258515(+)$1	231	90	96	15.2916
GKKFFF	chr8:100155246-100155494(+)$1	248	15	21	13.7291
GGGGG}	chr14:104123782-104124066(+)$1	284	233	239	13.8333
ooobb]	chr4:68372430-68372701(-)$1	271	56	62	14.1458
MMMMEE	chr11:65267173-65267374(+)$1	201	18	24	13.8333
nnnccc	chr19:11169366-11169616(+)$1	250	140	146	15.2916
gggggd	chr15:44806882-44807143(+)$1	261	102	108	15.2916
eeeee2	chr2:209200667-209200916(+)$1	249	107	113	15.2916
66666a	chr17:48797010-48797238(+)$1	228	147	153	14.1458
ppppcc	chr19:16653064-16653335(-)$1	271	39	45	14.1458
bb::DD	chr9:128001214-128001439(-)$1	225	38	44	13.8333
????BB	chr5:34938882-34939137(+)$1	255	163	169	15.2916
GGGG::	chr3:184040317-184040553(+)$1	236	180	186	13.7291
::::EE	chr5:39202272-39202531(-)$1	259	67	73	14.1458

#DB
.((.((	chr1:16269038-16269287(-)$1	1	57	63	14.1458
)))((.	chr19:2795997-2796248(+)$1	1	91	97	15.2916
((((((	chr19:46878800-46879096(+)$1	1	130	136	15.2916
......	chr1:67425268-67425506(+)$1	1	103	109	13.8333
((((((	chr16:2807411-2807666(+)$1	1	117	123	15.2916
......	chr1:41474366-41474665(+)$1	1	191	197	15.2916
.)))))	chr4:17826950-17827198(+)$1	1	229	235	15.2916
)...))	chr16:70602845-70603117(+)$1	1	194	200	15.2916
.(.(((	chr1:28534808-28535018(-)$1	1	119	125	15.2916
(((...	chr9:115950027-115950279(-)$1	1	55	61	14.1458
......	chr17:80146074-80146395(-)$1	1	129	135	15.2916
((.(.(	chr6:28116401-28116638(+)$1	1	207	213	15.2916
))))..	chr18:12367198-12367477(-)$1	1	198	204	15.2916
.(((((	chr12:131288821-131289184(-)$1	1	27	33	14.1458
)))))(	chr12:104379278-104379514(+)$1	1	111	117	13.8333
((((((	chr6:160467512-160467766(+)$1	1	77	83	13.7291
...(((	chr4:120418897-120419155(+)$1	1	11	17	15.2916
......	chr2:216992180-216992416(+)$1	1	137	143	13.8333
)).)))	chr11:13749002-13749332(+)$1	1	167	173	13.7291
...(((	chr11:94587014-94587322(+)$1	1	90	96	14.1458
(.....	chr15:44092862-44093081(+)$1	1	88	94	15.2916
...(((	chr18:2595455-2595693(+)$1	1	19	25	13.7291
)...((	chr7:149152176-149152421(-)$1	1	141	147	13.7291
)..)))	chr15:28499470-28499759(-)$1	1	120	126	15.2916
.....(	chr3:154032886-154033171(-)$1	1	167	173	13.7291
).....	chrX:129149931-129150219(+)$1	1	187	193	15.2916
((.((.	chr1:24972403-24972608(+)$1	1	111	117	13.8333
(...((	chr3:14200017-14200291(-)$1	1	137	143	15.2916
(((.((	chr1:168013768-168013998(+)$1	1	52	58	14.1458
((((..	chr12:112620879-112621102(-)$1	1	142	148	13.8333
.)))).	chr12:93169703-93169961(-)$1	1	125	131	14.1458
))...(	chr9:127998873-127999080(-)$1	1	103	109	15.2916
((((((	chr1:222827955-222828237(+)$1	1	158	164	15.2916
)))).)	chr1:204511824-204512171(+)$1	1	194	200	14.1458
(.(((.	chr9:131258284-131258515(+)$1	1	90	96	15.2916
(..(((	chr8:100155246-100155494(+)$1	1	15	21	13.7291
))))).	chr14:104123782-104124066(+)$1	1	233	239	13.8333
...)).	chr4:68372430-68372701(-)$1	1	56	62	14.1458
....((	chr11:65267173-65267374(+)$1	1	18	24	13.8333
...)))	chr19:11169366-11169616(+)$1	1	140	146	15.2916
)))))(	chr15:44806882-44807143(+)$1	1	102	108	15.2916
))))).	chr2:209200667-209200916(+)$1	1	107	113	15.2916
.....)	chr17:48797010-48797238(+)$1	1	147	153	14.1458
....))	chr19:16653064-16653335(-)$1	1	39	45	14.1458
))..))	chr9:128001214-128001439(-)$1	1	38	44	13.8333
....))	chr5:34938882-34939137(+)$1	1	163	169	15.2916
))))..	chr3:184040317-184040553(+)$1	1	180	186	13.7291
....((	chr5:39202272-39202531(-)$1	1	67	73	14.1458

#PSSM
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	
G : 0.45	C : 0.20	A : 0.14	U : 0.14	c : 0.02	a : 0.02	

#score	698.7916666666674
#seq	48
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_CDS_m2_run1.nuc.txt

#NT
UGG	chr19:46289584-46289888(-)$1	304	19	22	8.9999
UGG	chr18:60383546-60383828(+)$1	282	1	4	8.9999
ugg	chr3:48699936-48700203(-)$1	267	111	114	8.9999
UGG	chr4:85715969-85716233(-)$1	264	15	18	8.9999
UGG	chr10:18948362-18948676(+)$1	314	25	28	8.9999
UGG	chr6:144782232-144782454(+)$1	222	16	19	8.9999
UGG	chr10:123844165-123844418(+)$1	253	74	77	8.9999
UGG	chr12:49427201-49427432(-)$1	231	2	5	8.9999
UGG	chr16:18840737-18840985(-)$1	248	7	10	8.9999
UGG	chr1:19481333-19481606(-)$1	273	53	56	8.9999
UGG	chrX:70787486-70787702(+)$1	216	23	26	8.9999
UGG	chr1:12378028-12378272(+)$1	244	167	170	8.9999
UGG	chr14:24620593-24620806(+)$1	213	8	11	8.9999
UGG	chr21:34925054-34925303(+)$1	249	65	68	8.9999
UGG	chr10:19641080-19641322(+)$1	242	36	39	8.9999
UGG	chr12:120580379-120580623(-)$1	244	6	9	8.9999
UGG	chr17:65133991-65134329(-)$1	338	6	9	8.9999
UGG	chr6:144742940-144743154(+)$1	214	19	22	8.9999
UGG	chr10:105365457-105365672(-)$1	215	41	44	8.9999
UGG	chr15:43010226-43010467(+)$1	241	8	11	8.9999
ugg	chr12:57538656-57538901(+)$1	245	11	14	8.9999
UGG	chr6:90405556-90405802(-)$1	246	135	138	8.9999
UGG	chr10:93742347-93742618(+)$1	271	43	46	8.9999
UGG	chr1:19468066-19468330(-)$1	264	40	43	8.9999
UGG	chr5:14297105-14297382(+)$1	277	5	8	8.9999
UGG	chr15:63970370-63970619(-)$1	249	81	84	8.9999
UGG	chr9:107550201-107550429(-)$1	228	96	99	8.9999
UGG	chr20:60884671-60884949(-)$1	278	3	6	8.9999
UGG	chr3:58083585-58083804(+)$1	219	62	65	8.9999
UGG	chr6:90504196-90504471(-)$1	275	35	38	8.9999
UGG	chr12:112712564-112712853(-)$1	289	104	107	8.9999
UGG	chr16:58612501-58612741(-)$1	240	5	8	8.9999
UGG	chr12:26835497-26835706(-)$1	209	140	143	8.9999
UGG	chr1:19483163-19483420(-)$1	257	74	77	8.9999
UGG	chr2:109380261-109380514(+)$1	253	0	3	8.9999
UGG	chr2:73649973-73650203(+)$1	230	208	211	8.9999
UGG	chr7:5427390-5427647(-)$1	257	4	7	8.9999
UGG	chr12:49446889-49447126(-)$1	237	28	31	8.9999
UGG	chr6:144780298-144780519(+)$1	221	31	34	8.9999
UGG	chr4:187542257-187542546(-)$1	289	31	34	8.9999
UGG	chr4:151749231-151749528(-)$1	297	10	13	8.9999
UGG	chr20:31024544-31024785(+)$1	241	8	11	8.9999
UGG	chr1:19474459-19474688(-)$1	229	28	31	8.9999
UGG	chr12:49431342-49431596(-)$1	254	12	15	8.9999
UGG	chrX:70782647-70782888(+)$1	241	55	58	8.9999
UGG	chr12:57547894-57548116(+)$1	222	2	5	8.9999
UGG	chr16:18847720-18847955(-)$1	235	49	52	8.9999
UGG	chr6:90458851-90459139(-)$1	288	2	5	8.9999
UGG	chr12:57549828-57550051(+)$1	223	187	190	8.9999
UGG	chr7:151921518-151921784(-)$1	266	60	63	8.9999
UGG	chr9:117037938-117038148(+)$1	210	28	31	8.9999
UGG	chr16:18858671-18858946(-)$1	275	30	33	8.9999
UGG	chr17:1628420-1628675(+)$1	255	16	19	8.9999
UGG	chr2:61575335-61575613(-)$1	278	36	39	8.9999
UGG	chr1:55590908-55591166(-)$1	258	2	5	8.9999
UGG	chr7:103236866-103237154(-)$1	288	48	51	8.9999
UGG	chr16:2814998-2815260(+)$1	262	113	116	8.9999
UGG	chr11:108126861-108127153(+)$1	292	66	69	8.9999
UGG	chr16:18852787-18853037(-)$1	250	73	76	8.9999
UGG	chr17:78320785-78321013(+)$1	228	8	11	8.9999
UGG	chr6:56420042-56420278(-)$1	236	16	19	8.9999
UGG	chr19:47423935-47424172(+)$1	237	20	23	8.9999
UGG	chr9:117062862-117063066(+)$1	204	1	4	8.9999
UGG	chr4:151835361-151835593(-)$1	232	10	13	8.9999
UGG	chr9:79910373-79910620(+)$1	247	121	124	8.9999
UGG	chr1:214170605-214170858(+)$1	253	0	3	8.9999
UGG	chr6:144809732-144809990(+)$1	258	3	6	8.9999
UGG	chr16:1818441-1818728(+)$1	287	45	48	8.9999
UGG	chr8:25149540-25149789(+)$1	249	56	59	8.9999
UGG	chr8:100493842-100494117(+)$1	275	26	29	8.9999
UGG	chr17:78318814-78319119(+)$1	305	40	43	8.9999
UGG	chr10:101560141-101560383(+)$1	242	41	44	8.9999
UGG	chr5:14297182-14297472(+)$1	290	32	35	8.9999
UGG	chr10:103899691-103899944(+)$1	253	109	112	8.9999
UGG	chr12:49448410-49448633(-)$1	223	25	28	8.9999
UGG	chr17:35687065-35687320(-)$1	255	0	3	8.9999
UGG	chr7:98555503-98555735(+)$1	232	25	28	8.9999
UGG	chr4:73984340-73984630(-)$1	290	53	56	8.9999
UGG	chr17:26961924-26962187(-)$1	263	31	34	8.9999
UGG	chr4:123868287-123868544(+)$1	257	122	125	8.9999
UGG	chr17:78327718-78327972(+)$1	254	41	44	8.9999
UGG	chr9:117005733-117005939(+)$1	206	61	64	8.9999
UGG	chr4:151836659-151836931(-)$1	272	4	7	8.9999
UGG	chr17:7366181-7366434(-)$1	253	8	11	8.9999
UGG	chr6:31601576-31601817(+)$1	241	17	20	8.9999
UGG	chrX:53586367-53586592(-)$1	225	34	37	8.9999
UGG	chr12:71977751-71978024(+)$1	273	8	11	8.9999
UGG	chr20:62195411-62195681(-)$1	270	53	56	8.9999
UGG	chr11:73020530-73020756(+)$1	226	17	20	8.9999
UGG	chr16:16138206-16138468(+)$1	262	28	31	8.9999
UGG	chr1:110882837-110883112(+)$1	275	4	7	8.9999
UGG	chr2:227662870-227663159(-)$1	289	20	23	8.9999
UGG	chr12:49420647-49420897(-)$1	250	3	6	8.9999
UGG	chr16:2814000-2814243(+)$1	243	4	7	8.9999
UGG	chr1:19488057-19488286(-)$1	229	1	4	8.9999
UGG	chr7:103280891-103281146(-)$1	255	40	43	8.9999
UGG	chr19:58070943-58071207(-)$1	264	8	11	8.9999
UGG	chr10:21884229-21884470(+)$1	241	32	35	8.9999

#otherMatches

#Struct PSSM
HHH	chr20:33680331-33680560(-)$1	229	5	8	8.9999
:ff	chr19:46289584-46289888(-)$1	304	19	22	8.9999
:dd	chr18:60383546-60383828(+)$1	282	1	4	8.9999
:::	chr3:48699936-48700203(-)$1	267	111	114	8.9999
ggc	chr4:85715969-85716233(-)$1	264	15	18	8.9999
===	chr10:18948362-18948676(+)$1	314	25	28	8.9999
DDD	chr6:144782232-144782454(+)$1	222	16	19	8.9999
DDD	chr10:123844165-123844418(+)$1	253	74	77	8.9999
EEE	chr12:49427201-49427432(-)$1	231	2	5	8.9999
GGG	chr16:18840737-18840985(-)$1	248	7	10	8.9999
FFF	chr1:19481333-19481606(-)$1	273	53	56	8.9999
ccc	chrX:70787486-70787702(+)$1	216	23	26	8.9999
2ii	chr1:12378028-12378272(+)$1	244	167	170	8.9999
JJJ	chr14:24620593-24620806(+)$1	213	8	11	8.9999
!cc	chr21:34925054-34925303(+)$1	249	65	68	8.9999
hhh	chr10:19641080-19641322(+)$1	242	36	39	8.9999
[cc	chr12:120580379-120580623(-)$1	244	6	9	8.9999
CCC	chr17:65133991-65134329(-)$1	338	6	9	8.9999
EEE	chr6:144742940-144743154(+)$1	214	19	22	8.9999
ddq	chr10:105365457-105365672(-)$1	215	41	44	8.9999
LA{	chr15:43010226-43010467(+)$1	241	8	11	8.9999
{BB	chr12:57538656-57538901(+)$1	245	11	14	8.9999
ii:	chr6:90405556-90405802(-)$1	246	135	138	8.9999
iii	chr10:93742347-93742618(+)$1	271	43	46	8.9999
b22	chr1:19468066-19468330(-)$1	264	40	43	8.9999
:==	chr5:14297105-14297382(+)$1	277	5	8	8.9999
EEE	chr15:63970370-63970619(-)$1	249	81	84	8.9999
NNN	chr9:107550201-107550429(-)$1	228	96	99	8.9999
BB{	chr20:60884671-60884949(-)$1	278	3	6	8.9999
III	chr3:58083585-58083804(+)$1	219	62	65	8.9999
ppp	chr6:90504196-90504471(-)$1	275	35	38	8.9999
""b	chr12:112712564-112712853(-)$1	289	104	107	8.9999
DDB	chr16:58612501-58612741(-)$1	240	5	8	8.9999
fff	chr12:26835497-26835706(-)$1	209	140	143	8.9999
[cc	chr1:19483163-19483420(-)$1	257	74	77	8.9999
:::	chr2:109380261-109380514(+)$1	253	0	3	8.9999
hhh	chr2:73649973-73650203(+)$1	230	208	211	8.9999
CCL	chr7:5427390-5427647(-)$1	257	4	7	8.9999
DDD	chr12:49446889-49447126(-)$1	237	28	31	8.9999
ggg	chr6:144780298-144780519(+)$1	221	31	34	8.9999
b[a	chr4:187542257-187542546(-)$1	289	31	34	8.9999
DDD	chr4:151749231-151749528(-)$1	297	10	13	8.9999
d!!	chr20:31024544-31024785(+)$1	241	8	11	8.9999
:==	chr1:19474459-19474688(-)$1	229	28	31	8.9999
D{D	chr12:49431342-49431596(-)$1	254	12	15	8.9999
ggg	chrX:70782647-70782888(+)$1	241	55	58	8.9999
:CC	chr12:57547894-57548116(+)$1	222	2	5	8.9999
Fcc	chr16:18847720-18847955(-)$1	235	49	52	8.9999
:::	chr6:90458851-90459139(-)$1	288	2	5	8.9999
eee	chr12:57549828-57550051(+)$1	223	187	190	8.9999
ccc	chr7:151921518-151921784(-)$1	266	60	63	8.9999
ccn	chr9:117037938-117038148(+)$1	210	28	31	8.9999
sss	chr16:18858671-18858946(-)$1	275	30	33	8.9999
III	chr17:1628420-1628675(+)$1	255	16	19	8.9999
{CC	chr2:61575335-61575613(-)$1	278	36	39	8.9999
eee	chr1:55590908-55591166(-)$1	258	2	5	8.9999
a]h	chr7:103236866-103237154(-)$1	288	48	51	8.9999
ccc	chr16:2814998-2815260(+)$1	262	113	116	8.9999
===	chr11:108126861-108127153(+)$1	292	66	69	8.9999
eee	chr16:18852787-18853037(-)$1	250	73	76	8.9999
b[c	chr17:78320785-78321013(+)$1	228	8	11	8.9999
III	chr6:56420042-56420278(-)$1	236	16	19	8.9999
ff:	chr19:47423935-47424172(+)$1	237	20	23	8.9999
:ee	chr9:117062862-117063066(+)$1	204	1	4	8.9999
eep	chr4:151835361-151835593(-)$1	232	10	13	8.9999
bb[	chr9:79910373-79910620(+)$1	247	121	124	8.9999
ccc	chr1:214170605-214170858(+)$1	253	0	3	8.9999
fff	chr6:144809732-144809990(+)$1	258	3	6	8.9999
ddd	chr16:1818441-1818728(+)$1	287	45	48	8.9999
eee	chr8:25149540-25149789(+)$1	249	56	59	8.9999
III	chr8:100493842-100494117(+)$1	275	26	29	8.9999
ddd	chr17:78318814-78319119(+)$1	305	40	43	8.9999
dd3	chr10:101560141-101560383(+)$1	242	41	44	8.9999
d:F	chr5:14297182-14297472(+)$1	290	32	35	8.9999
cEE	chr10:103899691-103899944(+)$1	253	109	112	8.9999
:EE	chr12:49448410-49448633(-)$1	223	25	28	8.9999
:cc	chr17:35687065-35687320(-)$1	255	0	3	8.9999
fff	chr7:98555503-98555735(+)$1	232	25	28	8.9999
ee2	chr4:73984340-73984630(-)$1	290	53	56	8.9999
ccc	chr17:26961924-26962187(-)$1	263	31	34	8.9999
999	chr4:123868287-123868544(+)$1	257	122	125	8.9999
III	chr17:78327718-78327972(+)$1	254	41	44	8.9999
d!!	chr9:117005733-117005939(+)$1	206	61	64	8.9999
FF{	chr4:151836659-151836931(-)$1	272	4	7	8.9999
BBB	chr17:7366181-7366434(-)$1	253	8	11	8.9999
icc	chr6:31601576-31601817(+)$1	241	17	20	8.9999
D{B	chrX:53586367-53586592(-)$1	225	34	37	8.9999
:CC	chr12:71977751-71978024(+)$1	273	8	11	8.9999
cee	chr20:62195411-62195681(-)$1	270	53	56	8.9999
GGG	chr11:73020530-73020756(+)$1	226	17	20	8.9999
cc[	chr16:16138206-16138468(+)$1	262	28	31	8.9999
FFF	chr1:110882837-110883112(+)$1	275	4	7	8.9999
FFF	chr2:227662870-227663159(-)$1	289	20	23	8.9999
C{C	chr12:49420647-49420897(-)$1	250	3	6	8.9999
EEE	chr16:2814000-2814243(+)$1	243	4	7	8.9999
:CC	chr1:19488057-19488286(-)$1	229	1	4	8.9999
3==	chr7:103280891-103281146(-)$1	255	40	43	8.9999
:::	chr19:58070943-58071207(-)$1	264	8	11	8.9999
DKK	chr10:21884229-21884470(+)$1	241	32	35	8.9999

#DB
(((	chr20:33680331-33680560(-)$1	1	5	8	8.9999
.((	chr19:46289584-46289888(-)$1	1	19	22	8.9999
.((	chr18:60383546-60383828(+)$1	1	1	4	8.9999
...	chr3:48699936-48700203(-)$1	1	111	114	8.9999
(((	chr4:85715969-85716233(-)$1	1	15	18	8.9999
(((	chr10:18948362-18948676(+)$1	1	25	28	8.9999
(((	chr6:144782232-144782454(+)$1	1	16	19	8.9999
(((	chr10:123844165-123844418(+)$1	1	74	77	8.9999
(((	chr12:49427201-49427432(-)$1	1	2	5	8.9999
(((	chr16:18840737-18840985(-)$1	1	7	10	8.9999
(((	chr1:19481333-19481606(-)$1	1	53	56	8.9999
(((	chrX:70787486-70787702(+)$1	1	23	26	8.9999
.))	chr1:12378028-12378272(+)$1	1	167	170	8.9999
(((	chr14:24620593-24620806(+)$1	1	8	11	8.9999
.((	chr21:34925054-34925303(+)$1	1	65	68	8.9999
)))	chr10:19641080-19641322(+)$1	1	36	39	8.9999
.((	chr12:120580379-120580623(-)$1	1	6	9	8.9999
(((	chr17:65133991-65134329(-)$1	1	6	9	8.9999
(((	chr6:144742940-144743154(+)$1	1	19	22	8.9999
((.	chr10:105365457-105365672(-)$1	1	41	44	8.9999
.(.	chr15:43010226-43010467(+)$1	1	8	11	8.9999
.((	chr12:57538656-57538901(+)$1	1	11	14	8.9999
)).	chr6:90405556-90405802(-)$1	1	135	138	8.9999
(((	chr10:93742347-93742618(+)$1	1	43	46	8.9999
)..	chr1:19468066-19468330(-)$1	1	40	43	8.9999
.((	chr5:14297105-14297382(+)$1	1	5	8	8.9999
(((	chr15:63970370-63970619(-)$1	1	81	84	8.9999
...	chr9:107550201-107550429(-)$1	1	96	99	8.9999
((.	chr20:60884671-60884949(-)$1	1	3	6	8.9999
(((	chr3:58083585-58083804(+)$1	1	62	65	8.9999
...	chr6:90504196-90504471(-)$1	1	35	38	8.9999
..(	chr12:112712564-112712853(-)$1	1	104	107	8.9999
(((	chr16:58612501-58612741(-)$1	1	5	8	8.9999
)))	chr12:26835497-26835706(-)$1	1	140	143	8.9999
.((	chr1:19483163-19483420(-)$1	1	74	77	8.9999
...	chr2:109380261-109380514(+)$1	1	0	3	8.9999
)))	chr2:73649973-73650203(+)$1	1	208	211	8.9999
((.	chr7:5427390-5427647(-)$1	1	4	7	8.9999
(((	chr12:49446889-49447126(-)$1	1	28	31	8.9999
(((	chr6:144780298-144780519(+)$1	1	31	34	8.9999
(.(	chr4:187542257-187542546(-)$1	1	31	34	8.9999
(((	chr4:151749231-151749528(-)$1	1	10	13	8.9999
(..	chr20:31024544-31024785(+)$1	1	8	11	8.9999
.((	chr1:19474459-19474688(-)$1	1	28	31	8.9999
(.(	chr12:49431342-49431596(-)$1	1	12	15	8.9999
(((	chrX:70782647-70782888(+)$1	1	55	58	8.9999
.((	chr12:57547894-57548116(+)$1	1	2	5	8.9999
)((	chr16:18847720-18847955(-)$1	1	49	52	8.9999
...	chr6:90458851-90459139(-)$1	1	2	5	8.9999
(((	chr12:57549828-57550051(+)$1	1	187	190	8.9999
(((	chr7:151921518-151921784(-)$1	1	60	63	8.9999
((.	chr9:117037938-117038148(+)$1	1	28	31	8.9999
...	chr16:18858671-18858946(-)$1	1	30	33	8.9999
(((	chr17:1628420-1628675(+)$1	1	16	19	8.9999
.((	chr2:61575335-61575613(-)$1	1	36	39	8.9999
(((	chr1:55590908-55591166(-)$1	1	2	5	8.9999
).)	chr7:103236866-103237154(-)$1	1	48	51	8.9999
)))	chr16:2814998-2815260(+)$1	1	113	116	8.9999
(((	chr11:108126861-108127153(+)$1	1	66	69	8.9999
)))	chr16:18852787-18853037(-)$1	1	73	76	8.9999
(.(	chr17:78320785-78321013(+)$1	1	8	11	8.9999
(((	chr6:56420042-56420278(-)$1	1	16	19	8.9999
)).	chr19:47423935-47424172(+)$1	1	20	23	8.9999
.((	chr9:117062862-117063066(+)$1	1	1	4	8.9999
((.	chr4:151835361-151835593(-)$1	1	10	13	8.9999
((.	chr9:79910373-79910620(+)$1	1	121	124	8.9999
(((	chr1:214170605-214170858(+)$1	1	0	3	8.9999
(((	chr6:144809732-144809990(+)$1	1	3	6	8.9999
)))	chr16:1818441-1818728(+)$1	1	45	48	8.9999
)))	chr8:25149540-25149789(+)$1	1	56	59	8.9999
(((	chr8:100493842-100494117(+)$1	1	26	29	8.9999
)))	chr17:78318814-78319119(+)$1	1	40	43	8.9999
)).	chr10:101560141-101560383(+)$1	1	41	44	8.9999
).(	chr5:14297182-14297472(+)$1	1	32	35	8.9999
)((	chr10:103899691-103899944(+)$1	1	109	112	8.9999
.((	chr12:49448410-49448633(-)$1	1	25	28	8.9999
.((	chr17:35687065-35687320(-)$1	1	0	3	8.9999
)))	chr7:98555503-98555735(+)$1	1	25	28	8.9999
)).	chr4:73984340-73984630(-)$1	1	53	56	8.9999
)))	chr17:26961924-26962187(-)$1	1	31	34	8.9999
...	chr4:123868287-123868544(+)$1	1	122	125	8.9999
(((	chr17:78327718-78327972(+)$1	1	41	44	8.9999
(..	chr9:117005733-117005939(+)$1	1	61	64	8.9999
((.	chr4:151836659-151836931(-)$1	1	4	7	8.9999
(((	chr17:7366181-7366434(-)$1	1	8	11	8.9999
(((	chr6:31601576-31601817(+)$1	1	17	20	8.9999
(.(	chrX:53586367-53586592(-)$1	1	34	37	8.9999
.((	chr12:71977751-71978024(+)$1	1	8	11	8.9999
)((	chr20:62195411-62195681(-)$1	1	53	56	8.9999
(((	chr11:73020530-73020756(+)$1	1	17	20	8.9999
((.	chr16:16138206-16138468(+)$1	1	28	31	8.9999
(((	chr1:110882837-110883112(+)$1	1	4	7	8.9999
(((	chr2:227662870-227663159(-)$1	1	20	23	8.9999
(.(	chr12:49420647-49420897(-)$1	1	3	6	8.9999
(((	chr16:2814000-2814243(+)$1	1	4	7	8.9999
.((	chr1:19488057-19488286(-)$1	1	1	4	8.9999
.))	chr7:103280891-103281146(-)$1	1	40	43	8.9999
...	chr19:58070943-58071207(-)$1	1	8	11	8.9999
(..	chr10:21884229-21884470(+)$1	1	32	35	8.9999

#PSSM
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_CDS_m1_run2.nuc.txt

#NT
CCUGCCCA	chrX:47058054-47058322(+)$1	268	219	227	16.5735
CCUGCCCC	chr20:60900494-60900724(-)$1	230	6	14	16.7205
CCUGCUCG	chr2:242174566-242174838(-)$1	272	34	42	11.7205
CCUGCCUG	chr16:722567-722809(+)$1	242	54	62	12.0882
CCUGGCCA	chr2:101619017-101619268(+)$1	251	28	36	12.8235
GCUGCCCG	chr16:2162855-2163118(-)$1	263	48	56	11.7941
CCUGCCUA	chr6:30609791-30610055(+)$1	264	135	143	12.7499
CAUGCCCC	chrX:70518412-70518657(+)$1	245	172	180	12.3823
CCUGGCCC	chr3:52324826-52325085(+)$1	259	24	32	12.9705
CCUGCCCA	chr21:46193488-46193783(-)$1	295	113	121	16.5735
CCAGCCCC	chr14:105850542-105850814(+)$1	272	124	132	12.0882
CCUGCCAC	chr1:2447041-2447311(-)$1	270	133	141	12.6764
CCUGCCCA	chr2:97532063-97532313(-)$1	250	112	120	16.5735
CCUGCCCC	chr20:60899504-60899777(-)$1	273	146	154	16.7205
CCUGGCCC	chr21:47630525-47630822(-)$1	297	72	80	12.9705
CCUGCCUG	chr14:105240210-105240458(-)$1	248	100	108	12.0882
CCUGCACU	chr2:128183509-128183762(+)$1	253	46	54	12.0882
CCGGCCCC	chr22:41623610-41623928(+)$1	318	33	41	12.0147
GCUGCCCA	chr19:11558889-11559155(+)$1	266	146	154	12.4558
CUUGCCCU	chr2:220077684-220077933(-)$1	249	195	203	11.9411
CCUGCGCC	chr19:2272819-2273101(+)$1	282	41	49	12.3823
CCUGUCCU	chr17:80007771-80008038(-)$1	267	118	126	12.4558
CAUGCCCA	chr19:19105155-19105413(-)$1	258	49	57	12.2352
CCUCCCCA	chr1:3394817-3395105(+)$1	288	65	73	12.4558
CCUGCUCU	chr14:24634912-24635202(+)$1	290	24	32	12.3088
CCUGCCCA	chr16:75271120-75271380(-)$1	260	40	48	16.5735
CCUGACCC	chr19:50360056-50360371(+)$1	315	154	162	13.0441
CAUGCCCA	chr4:184203694-184203998(+)$1	304	97	105	12.2352
CCUGCCCA	chr16:8941450-8941690(+)$1	240	20	28	16.5735
CCUGCCUG	chr9:135925970-135926276(+)$1	306	124	132	12.0882
ccugaccu	chr1:154186316-154186561(-)$1	245	15	23	12.8235
CCUGCCAG	chr16:46962667-46962933(+)$1	266	143	151	11.8676
CCUGACCA	chr20:62326269-62326524(+)$1	255	17	25	12.8970
CCUGCCCU	chr12:49498548-49498811(-)$1	263	194	202	16.4999
ccuacccu	chr9:131184999-131185257(+)$1	258	25	33	12.0882
CCUGCCUC	chr2:675502-675790(-)$1	288	68	76	12.8970
CCUGGCCA	chr20:17606137-17606423(-)$1	286	61	69	12.8235
CCUGCCCC	chr12:31242650-31242898(+)$1	248	229	237	16.7205
GCUGCCCA	chr16:24965937-24966196(-)$1	259	218	226	12.4558
CCUGCUCC	chr9:130706851-130707120(-)$1	269	98	106	12.5294
CCAGCCCU	chr2:220079098-220079386(-)$1	288	162	170	11.8676
CCUGCCCC	chr16:2579317-2579578(+)$1	261	124	132	16.7205
GCUGCCCU	chr19:810548-810795(+)$1	247	108	116	12.3823
CCUGCCGU	chr19:11238536-11238794(+)$1	258	61	69	12.3088
CCUUCCCA	chr8:22884669-22884965(-)$1	296	142	150	12.1617
CCUGCCCU	chr7:44621312-44621612(-)$1	300	233	241	16.4999
CCUCCCCU	chr16:30764567-30764816(+)$1	249	131	139	12.3823
UCUGCCCA	chr3:49160705-49160957(-)$1	252	137	145	12.3823
CAUGCCCU	chr14:100607376-100607622(+)$1	246	212	220	12.1617
CCUGCUCC	chr14:24631176-24631478(+)$1	302	155	163	12.5294
CCUGGCCG	chr6:24666720-24666994(-)$1	274	41	49	12.1617
CCUGACCA	chr9:140481417-140481714(-)$1	297	81	89	12.8970
CCUGCCCG	chr11:67810653-67810959(+)$1	306	31	39	15.9117
CCUCCCCA	chr16:50666030-50666313(+)$1	283	23	31	12.4558
CCUGCCCC	chr17:79914828-79915095(-)$1	267	48	56	16.7205
CCUGCCCC	chr6:158480092-158480391(+)$1	299	106	114	16.7205
UCUGCCCU	chr9:37429580-37429835(+)$1	255	57	65	12.3088
CCUCCCCU	chr18:683242-683546(-)$1	304	260	268	12.3823
CCUGCCCC	chr20:34215231-34215512(-)$1	281	211	219	16.7205
CCUGACCU	chr16:23083411-23083669(-)$1	258	119	127	12.8235
CCUGCCAC	chr22:38884091-38884366(-)$1	275	202	210	12.6764
CCUGCCUG	chr16:89799742-89800010(+)$1	268	103	111	12.0882
CCUGCCCC	chr17:73897241-73897511(-)$1	270	256	264	16.7205
CCUGCGCC	chr16:29708175-29708427(+)$1	252	78	86	12.3823
ACUGCCCU	chr16:70712210-70712470(-)$1	260	16	24	12.1617
UCUGCCCG	chr19:45322162-45322422(+)$1	260	233	241	11.7205
CCUCCCCA	chr16:58577701-58577949(-)$1	248	125	133	12.4558

#otherMatches

#Struct PSSM
((((bbcc	chr13:113742470-113742757(+)$1	287	60	68	12.8235
>>>dddd]	chrX:47058054-47058322(+)$1	268	219	227	16.5735
:::::::E	chr20:60900494-60900724(-)$1	230	6	14	16.7205
:::FFFFF	chr2:242174566-242174838(-)$1	272	34	42	11.7205
hhhhhhh[	chr16:722567-722809(+)$1	242	54	62	12.0882
22eeeee2	chr2:101619017-101619268(+)$1	251	28	36	12.8235
{DDDDCCC	chr16:2162855-2163118(-)$1	263	48	56	11.7941
cc]ccc22	chr6:30609791-30610055(+)$1	264	135	143	12.7499
e::GGGGG	chrX:70518412-70518657(+)$1	245	172	180	12.3823
D{DDDDKK	chr3:52324826-52325085(+)$1	259	24	32	12.9705
ddddd444	chr21:46193488-46193783(-)$1	295	113	121	16.5735
ddd55555	chr14:105850542-105850814(+)$1	272	124	132	12.0882
::::::GG	chr1:2447041-2447311(-)$1	270	133	141	12.6764
d]cccddd	chr2:97532063-97532313(-)$1	250	112	120	16.5735
666eeeee	chr20:60899504-60899777(-)$1	273	146	154	16.7205
::::ccc[	chr21:47630525-47630822(-)$1	297	72	80	12.9705
eeeooooo	chr14:105240210-105240458(-)$1	248	100	108	12.0882
bb[bb[ff	chr2:128183509-128183762(+)$1	253	46	54	12.0882
H{EEEEEL	chr22:41623610-41623928(+)$1	318	33	41	12.0147
D:::::::	chr19:11558889-11559155(+)$1	266	146	154	12.4558
ddoooooo	chr2:220077684-220077933(-)$1	249	195	203	11.9411
fffff:::	chr19:2272819-2273101(+)$1	282	41	49	12.3823
ddoooooo	chr17:80007771-80008038(-)$1	267	118	126	12.4558
b!!fffff	chr19:19105155-19105413(-)$1	258	49	57	12.2352
eeeeeeer	chr1:3394817-3395105(+)$1	288	65	73	12.4558
mmmccc33	chr14:24634912-24635202(+)$1	290	24	32	12.3088
c%%%%%%b	chr16:75271120-75271380(-)$1	260	40	48	16.5735
dccc]ddd	chr19:50360056-50360371(+)$1	315	154	162	13.0441
HHHCCC:d	chr4:184203694-184203998(+)$1	304	97	105	12.2352
HHHfffff	chr16:8941450-8941690(+)$1	240	20	28	16.5735
OOOOOOBB	chr9:135925970-135926276(+)$1	306	124	132	12.0882
sssdddd:	chr1:154186316-154186561(-)$1	245	15	23	12.8235
dddd::ee	chr16:46962667-46962933(+)$1	266	143	151	11.8676
nnna]ccc	chr20:62326269-62326524(+)$1	255	17	25	12.8970
mmmbb>>>	chr12:49498548-49498811(-)$1	263	194	202	16.4999
HHH:::::	chr9:131184999-131185257(+)$1	258	25	33	12.0882
mmmeeeee	chr2:675502-675790(-)$1	288	68	76	12.8970
fffddddm	chr20:17606137-17606423(-)$1	286	61	69	12.8235
eeeee::D	chr12:31242650-31242898(+)$1	248	229	237	16.7205
cc]dddd:	chr16:24965937-24966196(-)$1	259	218	226	12.4558
ee]dddd2	chr9:130706851-130707120(-)$1	269	98	106	12.5294
qccc:::f	chr2:220079098-220079386(-)$1	288	162	170	11.8676
qffffffc	chr16:2579317-2579578(+)$1	261	124	132	16.7205
e7777777	chr19:810548-810795(+)$1	247	108	116	12.3823
BBDDDDEE	chr19:11238536-11238794(+)$1	258	61	69	12.3088
{DDDDOOO	chr8:22884669-22884965(-)$1	296	142	150	12.1617
tttttttt	chr7:44621312-44621612(-)$1	300	233	241	16.4999
ddd]ccc2	chr16:30764567-30764816(+)$1	249	131	139	12.3823
=====&&&	chr3:49160705-49160957(-)$1	252	137	145	12.3823
CCZZZEEE	chr14:100607376-100607622(+)$1	246	212	220	12.1617
ffffwwww	chr14:24631176-24631478(+)$1	302	155	163	12.5294
hh"""bb[	chr6:24666720-24666994(-)$1	274	41	49	12.1617
nnnnffff	chr9:140481417-140481714(-)$1	297	81	89	12.8970
=======g	chr11:67810653-67810959(+)$1	306	31	39	15.9117
::::::::	chr16:50666030-50666313(+)$1	283	23	31	12.4558
NNHHHHHH	chr17:79914828-79915095(-)$1	267	48	56	16.7205
e[eeeee[	chr6:158480092-158480391(+)$1	299	106	114	16.7205
fffffddd	chr9:37429580-37429835(+)$1	255	57	65	12.3088
JJJIIIII	chr18:683242-683546(-)$1	304	260	268	12.3823
DDDDYYBB	chr20:34215231-34215512(-)$1	281	211	219	16.7205
vvvvvddd	chr16:23083411-23083669(-)$1	258	119	127	12.8235
::::gggg	chr22:38884091-38884366(-)$1	275	202	210	12.6764
ffffnnnn	chr16:89799742-89800010(+)$1	268	103	111	12.0882
f22bbhhh	chr17:73897241-73897511(-)$1	270	256	264	16.7205
ddddcccm	chr16:29708175-29708427(+)$1	252	78	86	12.3823
LDDDD{EE	chr16:70712210-70712470(-)$1	260	16	24	12.1617
ccc22bbb	chr19:45322162-45322422(+)$1	260	233	241	11.7205
:dddd"""	chr16:58577701-58577949(-)$1	248	125	133	12.4558

#DB
....((((	chr13:113742470-113742757(+)$1	1	60	68	12.8235
...)))).	chrX:47058054-47058322(+)$1	1	219	227	16.5735
.......(	chr20:60900494-60900724(-)$1	1	6	14	16.7205
...(((((	chr2:242174566-242174838(-)$1	1	34	42	11.7205
(((((((.	chr16:722567-722809(+)$1	1	54	62	12.0882
..))))).	chr2:101619017-101619268(+)$1	1	28	36	12.8235
.(((((((	chr16:2162855-2163118(-)$1	1	48	56	11.7941
)).)))..	chr6:30609791-30610055(+)$1	1	135	143	12.7499
)..)))))	chrX:70518412-70518657(+)$1	1	172	180	12.3823
(.((((..	chr3:52324826-52325085(+)$1	1	24	32	12.9705
)))))...	chr21:46193488-46193783(-)$1	1	113	121	16.5735
))).....	chr14:105850542-105850814(+)$1	1	124	132	12.0882
......))	chr1:2447041-2447311(-)$1	1	133	141	12.6764
).))))))	chr2:97532063-97532313(-)$1	1	112	120	16.5735
...)))))	chr20:60899504-60899777(-)$1	1	146	154	16.7205
....(((.	chr21:47630525-47630822(-)$1	1	72	80	12.9705
(((.....	chr14:105240210-105240458(-)$1	1	100	108	12.0882
((.((.((	chr2:128183509-128183762(+)$1	1	46	54	12.0882
(.(((((.	chr22:41623610-41623928(+)$1	1	33	41	12.0147
).......	chr19:11558889-11559155(+)$1	1	146	154	12.4558
((......	chr2:220077684-220077933(-)$1	1	195	203	11.9411
)))))...	chr19:2272819-2273101(+)$1	1	41	49	12.3823
((......	chr17:80007771-80008038(-)$1	1	118	126	12.4558
(..(((((	chr19:19105155-19105413(-)$1	1	49	57	12.2352
(((((((.	chr1:3394817-3395105(+)$1	1	65	73	12.4558
...)))..	chr14:24634912-24635202(+)$1	1	24	32	12.3088
(......(	chr16:75271120-75271380(-)$1	1	40	48	16.5735
)))).)))	chr19:50360056-50360371(+)$1	1	154	162	13.0441
((((((.(	chr4:184203694-184203998(+)$1	1	97	105	12.2352
((((((((	chr16:8941450-8941690(+)$1	1	20	28	16.5735
......((	chr9:135925970-135926276(+)$1	1	124	132	12.0882
...)))).	chr1:154186316-154186561(-)$1	1	15	23	12.8235
))))..((	chr16:46962667-46962933(+)$1	1	143	151	11.8676
...).)))	chr20:62326269-62326524(+)$1	1	17	25	12.8970
...))...	chr12:49498548-49498811(-)$1	1	194	202	16.4999
(((.....	chr9:131184999-131185257(+)$1	1	25	33	12.0882
...)))))	chr2:675502-675790(-)$1	1	68	76	12.8970
)))((((.	chr20:17606137-17606423(-)$1	1	61	69	12.8235
)))))..)	chr12:31242650-31242898(+)$1	1	229	237	16.7205
)).)))).	chr16:24965937-24966196(-)$1	1	218	226	12.4558
)).)))).	chr9:130706851-130707120(-)$1	1	98	106	12.5294
.)))...(	chr2:220079098-220079386(-)$1	1	162	170	11.8676
.)))))))	chr16:2579317-2579578(+)$1	1	124	132	16.7205
).......	chr19:810548-810795(+)$1	1	108	116	12.3823
((((((((	chr19:11238536-11238794(+)$1	1	61	69	12.3088
.((((...	chr8:22884669-22884965(-)$1	1	142	150	12.1617
........	chr7:44621312-44621612(-)$1	1	233	241	16.4999
))).))).	chr16:30764567-30764816(+)$1	1	131	139	12.3823
(((((...	chr3:49160705-49160957(-)$1	1	137	145	12.3823
))...)))	chr14:100607376-100607622(+)$1	1	212	220	12.1617
((((....	chr14:24631176-24631478(+)$1	1	155	163	12.5294
((...((.	chr6:24666720-24666994(-)$1	1	41	49	12.1617
....))))	chr9:140481417-140481714(-)$1	1	81	89	12.8970
((((((((	chr11:67810653-67810959(+)$1	1	31	39	15.9117
........	chr16:50666030-50666313(+)$1	1	23	31	12.4558
..((((((	chr17:79914828-79915095(-)$1	1	48	56	16.7205
(.(((((.	chr6:158480092-158480391(+)$1	1	106	114	16.7205
))))))))	chr9:37429580-37429835(+)$1	1	57	65	12.3088
))))))))	chr18:683242-683546(-)$1	1	260	268	12.3823
))))..))	chr20:34215231-34215512(-)$1	1	211	219	16.7205
.....)))	chr16:23083411-23083669(-)$1	1	119	127	12.8235
....((((	chr22:38884091-38884366(-)$1	1	202	210	12.6764
((((....	chr16:89799742-89800010(+)$1	1	103	111	12.0882
)..)))))	chr17:73897241-73897511(-)$1	1	256	264	16.7205
(((((((.	chr16:29708175-29708427(+)$1	1	78	86	12.3823
.((((.((	chr16:70712210-70712470(-)$1	1	16	24	12.1617
)))..)))	chr19:45322162-45322422(+)$1	1	233	241	11.7205
.((((...	chr16:58577701-58577949(-)$1	1	125	133	12.4558

#PSSM
C : 0.85	G : 0.05	U : 0.04	c : 0.02	A : 0.01	
C : 0.89	A : 0.05	c : 0.02	U : 0.01	
U : 0.92	A : 0.02	u : 0.02	G : 0.01	
G : 0.88	C : 0.07	g : 0.01	a : 0.01	U : 0.01	
C : 0.80	A : 0.07	G : 0.07	U : 0.01	a : 0.01	c : 0.01	
C : 0.86	U : 0.05	G : 0.02	c : 0.02	A : 0.01	
C : 0.82	U : 0.08	A : 0.04	c : 0.02	G : 0.01	
C : 0.30	A : 0.27	U : 0.23	G : 0.14	u : 0.02	

#score	909.4999999999989
#seq	68
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_transcript_m2_run2.nuc.txt

#NT
UGGA	chr10:131980160-131980394(+)$1	234	51	55	12.0000
UGGA	chr1:8613334-8613640(-)$1	306	23	27	12.0000
UGGA	chr16:73061175-73061446(-)$1	271	17	21	12.0000
UGGA	chr10:125844211-125844464(-)$1	253	48	52	12.0000
UGGA	chr10:689469-689796(-)$1	327	16	20	12.0000
UGGA	chr16:81572098-81572368(+)$1	270	121	125	12.0000
ugga	chr6:168253277-168253515(+)$1	238	47	51	12.0000
UGGA	chr16:157895-158178(-)$1	283	263	267	12.0000
ugga	chr3:125059019-125059298(-)$1	279	91	95	12.0000
UGGA	chr9:86594371-86594584(-)$1	213	178	182	12.0000
ugga	chr3:66014712-66014950(-)$1	238	102	106	12.0000
UGGA	chr10:918774-919028(-)$1	254	17	21	12.0000
ugga	chr8:38953040-38953335(+)$1	295	40	44	12.0000
UGGA	chr20:40204096-40204362(-)$1	266	8	12	12.0000
UGGA	chr17:44246749-44246985(-)$1	236	106	110	12.0000
UGGA	chr5:138635120-138635396(+)$1	276	245	249	12.0000
UGGA	chr10:81449773-81450052(-)$1	279	30	34	12.0000
UGGA	chr8:119055920-119056212(-)$1	292	32	36	12.0000
ugga	chr6:82915773-82916039(-)$1	266	112	116	12.0000
UGGA	chr15:99334337-99334588(+)$1	251	92	96	12.0000
UGGA	chr15:99320109-99320364(+)$1	255	36	40	12.0000
UGGA	chr2:153255544-153255791(+)$1	247	55	59	12.0000
ugga	chr7:95897967-95898236(-)$1	269	11	15	12.0000
UGGA	chr13:99103991-99104254(-)$1	263	7	11	12.0000
ugga	chr6:111753763-111754007(-)$1	244	158	162	12.0000
UGGA	chr2:102427771-102428001(+)$1	230	87	91	12.0000
UGGA	chr3:41242084-41242346(+)$1	262	72	76	12.0000
UGGA	chr11:46497493-46497737(-)$1	244	25	29	12.0000
UGGA	chr9:688546-688789(+)$1	243	175	179	12.0000
ugga	chr16:84113065-84113306(-)$1	241	117	121	12.0000
ugga	chr2:180106702-180106953(-)$1	251	46	50	12.0000
ugga	chr9:80625996-80626248(-)$1	252	56	60	12.0000
UGGA	chr4:742565-742852(+)$1	287	116	120	12.0000
ugga	chr10:5743362-5743621(+)$1	259	106	110	12.0000
UGGA	chr3:99552420-99552673(+)$1	253	3	7	12.0000
UGGA	chr7:139873133-139873349(-)$1	216	153	157	12.0000
ugga	chr1:21456143-21456449(-)$1	306	118	122	12.0000
UGGA	chr5:112353093-112353374(+)$1	281	224	228	12.0000
ugga	chr9:134327710-134327947(+)$1	237	38	42	12.0000
ugga	chr6:47266487-47266767(-)$1	280	155	159	12.0000
ugga	chr3:101577328-101577574(+)$1	246	235	239	12.0000
UGGA	chr2:236460875-236461109(+)$1	234	85	89	12.0000
UGGA	chr16:90053362-90053601(+)$1	239	50	54	12.0000
UGGA	chr17:53358252-53358508(+)$1	256	4	8	12.0000
ugga	chr2:188382896-188383150(+)$1	254	242	246	12.0000
UGGA	chr2:240259624-240259910(-)$1	286	97	101	12.0000
UGGA	chr6:168364435-168364741(+)$1	306	146	150	12.0000
UGGA	chr11:68241214-68241519(+)$1	305	71	75	12.0000
ugga	chr2:180072278-180072534(-)$1	256	58	62	12.0000
UGGA	chr3:65980727-65980992(-)$1	265	9	13	12.0000
UGGA	chr21:38803005-38803249(+)$1	244	136	140	12.0000
UGGA	chr19:2199481-2199726(+)$1	245	164	168	12.0000
ugga	chr7:92445379-92445615(-)$1	236	136	140	12.0000
UGGA	chr6:57206570-57206858(+)$1	288	45	49	12.0000
UGGA	chr8:26152096-26152335(+)$1	239	135	139	12.0000
ugga	chr20:60568165-60568422(-)$1	257	26	30	12.0000
UGGA	chr6:157137746-157138056(+)$1	310	4	8	12.0000
ugga	chr3:15887828-15888084(-)$1	256	196	200	12.0000
ugga	chr7:138173328-138173569(+)$1	241	199	203	12.0000
ugga	chr2:240927618-240927902(-)$1	284	62	66	12.0000
UGGA	chr2:102428197-102428464(+)$1	267	120	124	12.0000
UGGA	chr7:27638135-27638447(-)$1	312	128	132	12.0000
ugga	chr22:46713404-46713664(+)$1	260	72	76	12.0000
UGGA	chr19:2103760-2104010(-)$1	250	216	220	12.0000
UGGA	chr15:64793367-64793618(+)$1	251	90	94	12.0000
UGGA	chr6:158778340-158778601(+)$1	261	113	117	12.0000
UGGA	chr4:153370008-153370299(-)$1	291	105	109	12.0000
ugga	chr2:38555242-38555530(-)$1	288	32	36	12.0000
ugga	chr2:223770776-223771052(+)$1	276	205	209	12.0000
UGGA	chr10:131361455-131361723(+)$1	268	210	214	12.0000
UGGA	chr10:97906923-97907175(+)$1	252	112	116	12.0000
UGGA	chr6:158982147-158982375(+)$1	228	36	40	12.0000
ugga	chr20:60615697-60615969(-)$1	272	88	92	12.0000
UGGA	chr20:60634465-60634691(-)$1	226	78	82	12.0000
ugga	chr19:50105140-50105472(+)$1	332	101	105	12.0000
ugga	chr11:17879988-17880239(-)$1	251	157	161	12.0000
UGGA	chr3:71613167-71613428(-)$1	261	78	82	12.0000
ugga	chr4:2676783-2677061(+)$1	278	266	270	12.0000
UGGA	chr16:75038113-75038384(+)$1	271	129	133	12.0000
UGGA	chr5:140982957-140983200(-)$1	243	27	31	12.0000
ugga	chr9:91967877-91968114(+)$1	237	10	14	12.0000
UGGA	chr3:41242376-41242617(+)$1	241	212	216	12.0000
UGGA	chr14:95773579-95773826(-)$1	247	83	87	12.0000
UGGA	chr20:61838852-61839153(-)$1	301	148	152	12.0000

#otherMatches

#Struct PSSM
cc]b	chr16:24763756-24763999(+)$1	243	101	105	12.0000
LGGG	chr10:131980160-131980394(+)$1	234	51	55	12.0000
eeee	chr1:8613334-8613640(-)$1	306	23	27	12.0000
gggh	chr16:73061175-73061446(-)$1	271	17	21	12.0000
EEhh	chr10:125844211-125844464(-)$1	253	48	52	12.0000
ffff	chr10:689469-689796(-)$1	327	16	20	12.0000
ccbb	chr16:81572098-81572368(+)$1	270	121	125	12.0000
HHHH	chr6:168253277-168253515(+)$1	238	47	51	12.0000
YADD	chr16:157895-158178(-)$1	283	263	267	12.0000
GGGK	chr3:125059019-125059298(-)$1	279	91	95	12.0000
dggg	chr9:86594371-86594584(-)$1	213	178	182	12.0000
d!!g	chr3:66014712-66014950(-)$1	238	102	106	12.0000
eeec	chr10:918774-919028(-)$1	254	17	21	12.0000
[a[d	chr8:38953040-38953335(+)$1	295	40	44	12.0000
CCCK	chr20:40204096-40204362(-)$1	266	8	12	12.0000
gggg	chr17:44246749-44246985(-)$1	236	106	110	12.0000
qqff	chr5:138635120-138635396(+)$1	276	245	249	12.0000
b[ff	chr10:81449773-81450052(-)$1	279	30	34	12.0000
JJJJ	chr8:119055920-119056212(-)$1	292	32	36	12.0000
fff[	chr6:82915773-82916039(-)$1	266	112	116	12.0000
bboo	chr15:99334337-99334588(+)$1	251	92	96	12.0000
c]ff	chr15:99320109-99320364(+)$1	255	36	40	12.0000
d"""	chr2:153255544-153255791(+)$1	247	55	59	12.0000
EEFF	chr7:95897967-95898236(-)$1	269	11	15	12.0000
c[ff	chr13:99103991-99104254(-)$1	263	7	11	12.0000
eeee	chr6:111753763-111754007(-)$1	244	158	162	12.0000
]ccc	chr2:102427771-102428001(+)$1	230	87	91	12.0000
NFFF	chr3:41242084-41242346(+)$1	262	72	76	12.0000
!a[d	chr11:46497493-46497737(-)$1	244	25	29	12.0000
eee5	chr9:688546-688789(+)$1	243	175	179	12.0000
:EEE	chr16:84113065-84113306(-)$1	241	117	121	12.0000
:fff	chr2:180106702-180106953(-)$1	251	46	50	12.0000
cccc	chr9:80625996-80626248(-)$1	252	56	60	12.0000
9999	chr4:742565-742852(+)$1	287	116	120	12.0000
FFFF	chr10:5743362-5743621(+)$1	259	106	110	12.0000
:EEE	chr3:99552420-99552673(+)$1	253	3	7	12.0000
gggg	chr7:139873133-139873349(-)$1	216	153	157	12.0000
[ccc	chr1:21456143-21456449(-)$1	306	118	122	12.0000
FFFF	chr5:112353093-112353374(+)$1	281	224	228	12.0000
]a::	chr9:134327710-134327947(+)$1	237	38	42	12.0000
gggF	chr6:47266487-47266767(-)$1	280	155	159	12.0000
YCCC	chr3:101577328-101577574(+)$1	246	235	239	12.0000
dddx	chr2:236460875-236461109(+)$1	234	85	89	12.0000
ccdd	chr16:90053362-90053601(+)$1	239	50	54	12.0000
::::	chr17:53358252-53358508(+)$1	256	4	8	12.0000
dccc	chr2:188382896-188383150(+)$1	254	242	246	12.0000
[ggg	chr2:240259624-240259910(-)$1	286	97	101	12.0000
BBKK	chr6:168364435-168364741(+)$1	306	146	150	12.0000
dd##	chr11:68241214-68241519(+)$1	305	71	75	12.0000
ddde	chr2:180072278-180072534(-)$1	256	58	62	12.0000
Cddd	chr3:65980727-65980992(-)$1	265	9	13	12.0000
====	chr21:38803005-38803249(+)$1	244	136	140	12.0000
eeee	chr19:2199481-2199726(+)$1	245	164	168	12.0000
iiii	chr7:92445379-92445615(-)$1	236	136	140	12.0000
NNNN	chr6:57206570-57206858(+)$1	288	45	49	12.0000
gggg	chr8:26152096-26152335(+)$1	239	135	139	12.0000
[bb!	chr20:60568165-60568422(-)$1	257	26	30	12.0000
EEEE	chr6:157137746-157138056(+)$1	310	4	8	12.0000
b]ii	chr3:15887828-15888084(-)$1	256	196	200	12.0000
eeee	chr7:138173328-138173569(+)$1	241	199	203	12.0000
ddd:	chr2:240927618-240927902(-)$1	284	62	66	12.0000
iiii	chr2:102428197-102428464(+)$1	267	120	124	12.0000
33bb	chr7:27638135-27638447(-)$1	312	128	132	12.0000
:ggg	chr22:46713404-46713664(+)$1	260	72	76	12.0000
]bb:	chr19:2103760-2104010(-)$1	250	216	220	12.0000
ffff	chr15:64793367-64793618(+)$1	251	90	94	12.0000
!fff	chr6:158778340-158778601(+)$1	261	113	117	12.0000
dddd	chr4:153370008-153370299(-)$1	291	105	109	12.0000
pa]d	chr2:38555242-38555530(-)$1	288	32	36	12.0000
GGGG	chr2:223770776-223771052(+)$1	276	205	209	12.0000
:ggg	chr10:131361455-131361723(+)$1	268	210	214	12.0000
eee]	chr10:97906923-97907175(+)$1	252	112	116	12.0000
LHHH	chr6:158982147-158982375(+)$1	228	36	40	12.0000
eeee	chr20:60615697-60615969(-)$1	272	88	92	12.0000
ffff	chr20:60634465-60634691(-)$1	226	78	82	12.0000
HHHH	chr19:50105140-50105472(+)$1	332	101	105	12.0000
c[dd	chr11:17879988-17880239(-)$1	251	157	161	12.0000
====	chr3:71613167-71613428(-)$1	261	78	82	12.0000
FFFF	chr4:2676783-2677061(+)$1	278	266	270	12.0000
2ddd	chr16:75038113-75038384(+)$1	271	129	133	12.0000
eeee	chr5:140982957-140983200(-)$1	243	27	31	12.0000
:ccc	chr9:91967877-91968114(+)$1	237	10	14	12.0000
cc]g	chr3:41242376-41242617(+)$1	241	212	216	12.0000
ffdd	chr14:95773579-95773826(-)$1	247	83	87	12.0000
ccc2	chr20:61838852-61839153(-)$1	301	148	152	12.0000

#DB
)).)	chr16:24763756-24763999(+)$1	1	101	105	12.0000
.(((	chr10:131980160-131980394(+)$1	1	51	55	12.0000
((((	chr1:8613334-8613640(-)$1	1	23	27	12.0000
((((	chr16:73061175-73061446(-)$1	1	17	21	12.0000
((((	chr10:125844211-125844464(-)$1	1	48	52	12.0000
))))	chr10:689469-689796(-)$1	1	16	20	12.0000
((((	chr16:81572098-81572368(+)$1	1	121	125	12.0000
((((	chr6:168253277-168253515(+)$1	1	47	51	12.0000
.)))	chr16:157895-158178(-)$1	1	263	267	12.0000
(((.	chr3:125059019-125059298(-)$1	1	91	95	12.0000
))))	chr9:86594371-86594584(-)$1	1	178	182	12.0000
(..(	chr3:66014712-66014950(-)$1	1	102	106	12.0000
))))	chr10:918774-919028(-)$1	1	17	21	12.0000
.(.(	chr8:38953040-38953335(+)$1	1	40	44	12.0000
(((.	chr20:40204096-40204362(-)$1	1	8	12	12.0000
((((	chr17:44246749-44246985(-)$1	1	106	110	12.0000
..))	chr5:138635120-138635396(+)$1	1	245	249	12.0000
(.((	chr10:81449773-81450052(-)$1	1	30	34	12.0000
((((	chr8:119055920-119056212(-)$1	1	32	36	12.0000
(((.	chr6:82915773-82916039(-)$1	1	112	116	12.0000
((..	chr15:99334337-99334588(+)$1	1	92	96	12.0000
).))	chr15:99320109-99320364(+)$1	1	36	40	12.0000
(...	chr2:153255544-153255791(+)$1	1	55	59	12.0000
((((	chr7:95897967-95898236(-)$1	1	11	15	12.0000
(.((	chr13:99103991-99104254(-)$1	1	7	11	12.0000
((((	chr6:111753763-111754007(-)$1	1	158	162	12.0000
.)))	chr2:102427771-102428001(+)$1	1	87	91	12.0000
.(((	chr3:41242084-41242346(+)$1	1	72	76	12.0000
.(.(	chr11:46497493-46497737(-)$1	1	25	29	12.0000
))).	chr9:688546-688789(+)$1	1	175	179	12.0000
.)))	chr16:84113065-84113306(-)$1	1	117	121	12.0000
.(((	chr2:180106702-180106953(-)$1	1	46	50	12.0000
((((	chr9:80625996-80626248(-)$1	1	56	60	12.0000
....	chr4:742565-742852(+)$1	1	116	120	12.0000
))))	chr10:5743362-5743621(+)$1	1	106	110	12.0000
.(((	chr3:99552420-99552673(+)$1	1	3	7	12.0000
))))	chr7:139873133-139873349(-)$1	1	153	157	12.0000
.(((	chr1:21456143-21456449(-)$1	1	118	122	12.0000
))))	chr5:112353093-112353374(+)$1	1	224	228	12.0000
.)..	chr9:134327710-134327947(+)$1	1	38	42	12.0000
)))(	chr6:47266487-47266767(-)$1	1	155	159	12.0000
.)))	chr3:101577328-101577574(+)$1	1	235	239	12.0000
(((.	chr2:236460875-236461109(+)$1	1	85	89	12.0000
((((	chr16:90053362-90053601(+)$1	1	50	54	12.0000
....	chr17:53358252-53358508(+)$1	1	4	8	12.0000
))))	chr2:188382896-188383150(+)$1	1	242	246	12.0000
.(((	chr2:240259624-240259910(-)$1	1	97	101	12.0000
((..	chr6:168364435-168364741(+)$1	1	146	150	12.0000
((..	chr11:68241214-68241519(+)$1	1	71	75	12.0000
((((	chr2:180072278-180072534(-)$1	1	58	62	12.0000
((((	chr3:65980727-65980992(-)$1	1	9	13	12.0000
((((	chr21:38803005-38803249(+)$1	1	136	140	12.0000
((((	chr19:2199481-2199726(+)$1	1	164	168	12.0000
))))	chr7:92445379-92445615(-)$1	1	136	140	12.0000
....	chr6:57206570-57206858(+)$1	1	45	49	12.0000
((((	chr8:26152096-26152335(+)$1	1	135	139	12.0000
.((.	chr20:60568165-60568422(-)$1	1	26	30	12.0000
((((	chr6:157137746-157138056(+)$1	1	4	8	12.0000
).))	chr3:15887828-15888084(-)$1	1	196	200	12.0000
))))	chr7:138173328-138173569(+)$1	1	199	203	12.0000
))).	chr2:240927618-240927902(-)$1	1	62	66	12.0000
((((	chr2:102428197-102428464(+)$1	1	120	124	12.0000
..))	chr7:27638135-27638447(-)$1	1	128	132	12.0000
.(((	chr22:46713404-46713664(+)$1	1	72	76	12.0000
.)).	chr19:2103760-2104010(-)$1	1	216	220	12.0000
((((	chr15:64793367-64793618(+)$1	1	90	94	12.0000
.(((	chr6:158778340-158778601(+)$1	1	113	117	12.0000
))))	chr4:153370008-153370299(-)$1	1	105	109	12.0000
.).)	chr2:38555242-38555530(-)$1	1	32	36	12.0000
))))	chr2:223770776-223771052(+)$1	1	205	209	12.0000
.(((	chr10:131361455-131361723(+)$1	1	210	214	12.0000
))).	chr10:97906923-97907175(+)$1	1	112	116	12.0000
.(((	chr6:158982147-158982375(+)$1	1	36	40	12.0000
((((	chr20:60615697-60615969(-)$1	1	88	92	12.0000
((((	chr20:60634465-60634691(-)$1	1	78	82	12.0000
))))	chr19:50105140-50105472(+)$1	1	101	105	12.0000
(.((	chr11:17879988-17880239(-)$1	1	157	161	12.0000
((((	chr3:71613167-71613428(-)$1	1	78	82	12.0000
))))	chr4:2676783-2677061(+)$1	1	266	270	12.0000
.)))	chr16:75038113-75038384(+)$1	1	129	133	12.0000
((((	chr5:140982957-140983200(-)$1	1	27	31	12.0000
.(((	chr9:91967877-91968114(+)$1	1	10	14	12.0000
)).)	chr3:41242376-41242617(+)$1	1	212	216	12.0000
))))	chr14:95773579-95773826(-)$1	1	83	87	12.0000
))).	chr20:61838852-61839153(-)$1	1	148	152	12.0000

#PSSM
U : 0.64	u : 0.35	
G : 0.64	g : 0.35	
G : 0.64	g : 0.35	
A : 0.64	a : 0.35	

#score	1020.0
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_transcript_m3_run1.nuc.txt

#NT
CCAGGCACCAAGCAUGAGACCUGGUCUGGACAUGUCAUCAGCUCCUAGGAGAUGGUGGAAGCACCCCUUGUCCUGUGCUUGUGGGAGACUUUGCAGGGAGGAGGCAGCAGACACUGGAGAUGACAUUCUUCCACACGAGACGGGGCUUCAGCCGGGCAUGGUCCCUCUCAAGUAUCUCCUGGAGGAAGGGGUAUGGGGGGCAGGUGUGGGGUGUGGGGUGUUCCCGGCCAUCAGCACAGCCUAUGACCAUUGCAACAACCUCUCACCAUCUGAAGAGCAUUAAAAGCAUUUAAAAAGGAGAGGUGCCCACUGGUGGCUGAGUGGAG	chr16:8948714-8949096(-)$1	382	28	354	413.0000

#otherMatches

#Struct PSSM
dd[ddddllldddd]dddd333bb::ddddccceeeeemmmmeeeee]ccc55555dddd::ddddllldddd::::CCCKKEEEEE::::::ddddmmmmdddd::ffffff$$$$$ccc"""ccc[eeeee[cccooooooccceeeeecccccc333ffffff::EEEEE}CCCFFFFFF~~~~CCC}DDDDYYBBHHHHHHHH:CCCdddd!!ddddoooooodddd]dddd:::dddd[dddd[aqqqqqqqqa]dddd22dddd::::::::::ddddqqqqqqqqdddd:::::::::cccssssssssssccc::CCC	chr19:39660071-39660512(+)$1	441	113	439	413.0000
:CCC{EEEEE:BB{DDDD{CCC{DDDDCCC{HHHHHHHH::cccmmmmccc::ddddmmmmdddddddd[dddd[ccc####bbmmmmbb22cccdddd]ddddcccooooooccc::HHHHHHHHZZZCCC?????DDDD}CCC}DDDDBB:DDDD:::ggggggg####eeeee[cccooooooccceeeeeggggggg:ccceeeee[dddd[ddddqqqqqqqqdddd22dddd]eeeee]ccc:::::::::ggggggg%%%%%%dddd!!bbpppppppbb]dddd55555gggggggDDDDYYEEEEE}CCC:dddd[c	chr16:8948714-8949096(-)$1	382	28	354	413.0000

#DB
((.((((...)))).))))...))..((((((((((((....))))).))).....))))..((((...))))....(((..(((((......((((....))))..((((((.....(((...(((.(((((.(((......))))))))))))))...))))))..))))).)))))))))....))).))))..)))))))))).(((((((..((((......)))).))))...((((.((((.(........).))))..))))..........((((........)))).........(((..........)))..)))	chr19:39660071-39660512(+)$1	1	113	439	413.0000
.(((.(((((.((.((((.(((.(((((((.((((((((..(((....)))..((((....))))((((.((((.(((....((....))..))))))).))))(((......)))..))))))))...))).....)))).))).)))))).((((...(((((((....(((((.(((......))))))))))))))).((((((((.((((.((((........))))..)))).))))).))).........(((((((......((((..((.......)).)))).....)))))))))))..))))).))).((((.(	chr16:8948714-8949096(-)$1	1	28	354	413.0000

#PSSM
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	

#score	826.0
#seq	2
#width	326
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_transcript_m2_run1.nuc.txt

#NT
GAAGA	chr19:11113621-11113927(+)$1	306	145	150	14.9999
gaaga	chr1:14104987-14105301(+)$1	314	104	109	14.9999
GAAGA	chr3:37367500-37367736(+)$1	236	89	94	14.9999
GAAGA	chr11:77387796-77388073(-)$1	277	100	105	14.9999
GAAGA	chr1:167973052-167973327(+)$1	275	117	122	14.9999
GAAGA	chr17:48827760-48827979(+)$1	219	163	168	14.9999
GAAGA	chr1:35654684-35654918(-)$1	234	89	94	14.9999
GAAGA	chr12:123875182-123875434(+)$1	252	75	80	14.9999
gaaga	chr1:235377140-235377440(-)$1	300	115	120	14.9999
GAAGA	chr11:62299022-62299287(-)$1	265	23	28	14.9999
gaaga	chr1:52305950-52306216(-)$1	266	118	123	14.9999
GAAGA	chr1:24979305-24979610(+)$1	305	148	153	14.9999
GAAGA	chr1:46073885-46074159(+)$1	274	54	59	14.9999
gaaga	chr14:102550936-102551166(-)$1	230	1	6	14.9999
GAAGA	chr6:26056093-26056304(-)$1	211	88	93	14.9999
gaaga	chr6:44217991-44218199(+)$1	208	81	86	14.9999
GAAGA	chr3:185649301-185649585(-)$1	284	120	125	14.9999
GAAGA	chr5:34938907-34939215(+)$1	308	176	181	14.9999
gaaga	chr1:150195411-150195663(-)$1	252	100	105	14.9999
gaaga	chr12:104341084-104341308(+)$1	224	7	12	14.9999
GAAGA	chr17:27000322-27000627(+)$1	305	136	141	14.9999
GAAGA	chr1:235383528-235383832(-)$1	304	159	164	14.9999
GAAGA	chr11:62297626-62297874(-)$1	248	125	130	14.9999
GAAGA	chr2:170493355-170493605(+)$1	250	130	135	14.9999
GAAGA	chr1:150667051-150667419(-)$1	368	161	166	14.9999
gaaga	chr16:2808432-2808649(+)$1	217	83	88	14.9999
GAAGA	chr3:52725325-52725559(+)$1	234	75	80	14.9999
gaaga	chr1:150208007-150208284(-)$1	277	132	137	14.9999
GAAGA	chr17:48823089-48823309(+)$1	220	12	17	14.9999
GAAGA	chr15:93480645-93480923(+)$1	278	127	132	14.9999
GAAGA	chr2:27606810-27607042(-)$1	232	95	100	14.9999
GAAGA	chr10:120803465-120803698(-)$1	233	114	119	14.9999
GAAGA	chr2:232327865-232328113(-)$1	248	140	145	14.9999
GAAGA	chr8:94748204-94748493(-)$1	289	5	10	14.9999
GAAGA	chr6:4032730-4033057(+)$1	327	51	56	14.9999
GAAGA	chr3:37368210-37368433(+)$1	223	42	47	14.9999
gaaga	chr9:100777576-100777789(+)$1	213	74	79	14.9999
GAAGA	chr1:186305581-186305849(-)$1	268	164	169	14.9999
GAAGA	chr16:89349825-89350099(-)$1	274	212	217	14.9999
GAAGA	chr12:42707575-42707879(-)$1	304	153	158	14.9999
GAAGA	chr2:20491255-20491547(-)$1	292	14	19	14.9999
GAAGA	chrX:152956590-152956834(+)$1	244	133	138	14.9999
GAAGA	chr1:171501389-171501661(+)$1	272	123	128	14.9999
GAAGA	chr3:37368344-37368579(+)$1	235	10	15	14.9999
GAAGA	chr19:5604556-5604805(-)$1	249	152	157	14.9999
GAAGA	chr19:11106869-11107151(+)$1	282	22	27	14.9999
GAAGA	chr6:99856946-99857186(-)$1	240	57	62	14.9999
GAAGA	chr10:43311959-43312216(+)$1	257	107	112	14.9999
GAAGA	chr21:39551005-39551266(+)$1	261	158	163	14.9999
GAAGA	chr11:129992163-129992425(+)$1	262	61	66	14.9999
gaaga	chr9:100777545-100777749(+)$1	204	105	110	14.9999
GAAGA	chr2:170487227-170487539(+)$1	312	64	69	14.9999
gaaga	chr9:100777572-100777776(+)$1	204	78	83	14.9999
GAAGA	chrX:118971824-118972100(-)$1	276	90	95	14.9999
gaaga	chrX:102612452-102612731(+)$1	279	107	112	14.9999
GAAGA	chrX:64956939-64957170(+)$1	231	105	110	14.9999
GAAGA	chr1:205692995-205693210(-)$1	215	111	116	14.9999
GAAGA	chr1:193107126-193107400(+)$1	274	91	96	14.9999
gaaga	chr11:65267315-65267527(+)$1	212	4	9	14.9999
GAAGA	chr10:43291926-43292198(+)$1	272	71	76	14.9999
gaaga	chr11:65267034-65267249(+)$1	215	77	82	14.9999
gaaga	chr11:65267144-65267346(+)$1	202	17	22	14.9999
gaaga	chr11:65267327-65267531(+)$1	204	83	88	14.9999
GAAGA	chr1:186313413-186313654(-)$1	241	70	75	14.9999
GAAGA	chr22:22843481-22843869(-)$1	388	164	169	14.9999
GAAGA	chr18:47014815-47015036(-)$1	221	108	113	14.9999
GAAGA	chr10:103920417-103920665(+)$1	248	8	13	14.9999
gaaga	chr5:149777817-149778116(+)$1	299	127	132	14.9999
GAAGA	chr11:65827152-65827383(+)$1	231	35	40	14.9999
GAAGA	chr11:65268019-65268226(+)$1	207	18	23	14.9999
GAAGA	chr11:65267561-65267779(+)$1	218	21	26	14.9999
GAAGA	chr14:24606628-24606875(+)$1	247	21	26	14.9999
gaaga	chr8:17815054-17815308(+)$1	254	44	49	14.9999
GAAGA	chr1:186315289-186315521(-)$1	232	108	113	14.9999
GAAGA	chr5:98212095-98212358(-)$1	263	196	201	14.9999
GAAGA	chr1:245026819-245027077(-)$1	258	22	27	14.9999
gaaga	chr2:232325279-232325481(-)$1	202	2	7	14.9999

#otherMatches

#Struct PSSM
::::d	chr11:62298844-62299083(-)$1	239	182	187	14.9999
CCLLL	chr19:11113621-11113927(+)$1	306	145	150	14.9999
E}BB}	chr1:14104987-14105301(+)$1	314	104	109	14.9999
gggg5	chr3:37367500-37367736(+)$1	236	89	94	14.9999
e::::	chr11:77387796-77388073(-)$1	277	100	105	14.9999
99999	chr1:167973052-167973327(+)$1	275	117	122	14.9999
JJJJJ	chr17:48827760-48827979(+)$1	219	163	168	14.9999
DD:::	chr1:35654684-35654918(-)$1	234	89	94	14.9999
b%%%%	chr12:123875182-123875434(+)$1	252	75	80	14.9999
^^^^^	chr1:235377140-235377440(-)$1	300	115	120	14.9999
DDDKK	chr11:62299022-62299287(-)$1	265	23	28	14.9999
b::::	chr1:52305950-52306216(-)$1	266	118	123	14.9999
ccc33	chr1:24979305-24979610(+)$1	305	148	153	14.9999
$$$$$	chr1:46073885-46074159(+)$1	274	54	59	14.9999
GGGGG	chr14:102550936-102551166(-)$1	230	1	6	14.9999
mmmbb	chr6:26056093-26056304(-)$1	211	88	93	14.9999
=::::	chr6:44217991-44218199(+)$1	208	81	86	14.9999
h4444	chr3:185649301-185649585(-)$1	284	120	125	14.9999
&&&&&	chr5:34938907-34939215(+)$1	308	176	181	14.9999
fffff	chr1:150195411-150195663(-)$1	252	100	105	14.9999
^^^^^	chr12:104341084-104341308(+)$1	224	7	12	14.9999
dddd]	chr17:27000322-27000627(+)$1	305	136	141	14.9999
dddde	chr1:235383528-235383832(-)$1	304	159	164	14.9999
55555	chr11:62297626-62297874(-)$1	248	125	130	14.9999
:::::	chr2:170493355-170493605(+)$1	250	130	135	14.9999
cc:::	chr1:150667051-150667419(-)$1	368	161	166	14.9999
ddd55	chr16:2808432-2808649(+)$1	217	83	88	14.9999
:::::	chr3:52725325-52725559(+)$1	234	75	80	14.9999
mmmmc	chr1:150208007-150208284(-)$1	277	132	137	14.9999
:::::	chr17:48823089-48823309(+)$1	220	12	17	14.9999
3hhhh	chr15:93480645-93480923(+)$1	278	127	132	14.9999
rrrrr	chr2:27606810-27607042(-)$1	232	95	100	14.9999
JJJJJ	chr10:120803465-120803698(-)$1	233	114	119	14.9999
b::::	chr2:232327865-232328113(-)$1	248	140	145	14.9999
hhh!!	chr8:94748204-94748493(-)$1	289	5	10	14.9999
tttff	chr6:4032730-4033057(+)$1	327	51	56	14.9999
55555	chr3:37368210-37368433(+)$1	223	42	47	14.9999
bb333	chr9:100777576-100777789(+)$1	213	74	79	14.9999
:::::	chr1:186305581-186305849(-)$1	268	164	169	14.9999
:::::	chr16:89349825-89350099(-)$1	274	212	217	14.9999
:HHHH	chr12:42707575-42707879(-)$1	304	153	158	14.9999
f%%%%	chr2:20491255-20491547(-)$1	292	14	19	14.9999
ffff!	chrX:152956590-152956834(+)$1	244	133	138	14.9999
emmmm	chr1:171501389-171501661(+)$1	272	123	128	14.9999
qqqdd	chr3:37368344-37368579(+)$1	235	10	15	14.9999
uuuuu	chr19:5604556-5604805(-)$1	249	152	157	14.9999
c!!ff	chr19:11106869-11107151(+)$1	282	22	27	14.9999
a22cc	chr6:99856946-99857186(-)$1	240	57	62	14.9999
CCC{A	chr10:43311959-43312216(+)$1	257	107	112	14.9999
GG:::	chr21:39551005-39551266(+)$1	261	158	163	14.9999
&&&&&	chr11:129992163-129992425(+)$1	262	61	66	14.9999
bb333	chr9:100777545-100777749(+)$1	204	105	110	14.9999
zzeee	chr2:170487227-170487539(+)$1	312	64	69	14.9999
bb333	chr9:100777572-100777776(+)$1	204	78	83	14.9999
ppppp	chrX:118971824-118972100(-)$1	276	90	95	14.9999
ooodd	chrX:102612452-102612731(+)$1	279	107	112	14.9999
+++++	chrX:64956939-64957170(+)$1	231	105	110	14.9999
ggggg	chr1:205692995-205693210(-)$1	215	111	116	14.9999
cc::c	chr1:193107126-193107400(+)$1	274	91	96	14.9999
:::::	chr11:65267315-65267527(+)$1	212	4	9	14.9999
hhhhh	chr10:43291926-43292198(+)$1	272	71	76	14.9999
nnddd	chr11:65267034-65267249(+)$1	215	77	82	14.9999
:::::	chr11:65267144-65267346(+)$1	202	17	22	14.9999
vvvvv	chr11:65267327-65267531(+)$1	204	83	88	14.9999
JJJJJ	chr1:186313413-186313654(-)$1	241	70	75	14.9999
GGGGG	chr22:22843481-22843869(-)$1	388	164	169	14.9999
[ccc#	chr18:47014815-47015036(-)$1	221	108	113	14.9999
:::::	chr10:103920417-103920665(+)$1	248	8	13	14.9999
:::::	chr5:149777817-149778116(+)$1	299	127	132	14.9999
:::::	chr11:65827152-65827383(+)$1	231	35	40	14.9999
A{A{B	chr11:65268019-65268226(+)$1	207	18	23	14.9999
ewwww	chr11:65267561-65267779(+)$1	218	21	26	14.9999
DD{CC	chr14:24606628-24606875(+)$1	247	21	26	14.9999
dd===	chr8:17815054-17815308(+)$1	254	44	49	14.9999
]a]ee	chr1:186315289-186315521(-)$1	232	108	113	14.9999
emmmm	chr5:98212095-98212358(-)$1	263	196	201	14.9999
F::::	chr1:245026819-245027077(-)$1	258	22	27	14.9999
:::::	chr2:232325279-232325481(-)$1	202	2	7	14.9999

#DB
....(	chr11:62298844-62299083(-)$1	1	182	187	14.9999
((...	chr19:11113621-11113927(+)$1	1	145	150	14.9999
).)).	chr1:14104987-14105301(+)$1	1	104	109	14.9999
)))).	chr3:37367500-37367736(+)$1	1	89	94	14.9999
)....	chr11:77387796-77388073(-)$1	1	100	105	14.9999
.....	chr1:167973052-167973327(+)$1	1	117	122	14.9999
)))))	chr17:48827760-48827979(+)$1	1	163	168	14.9999
((...	chr1:35654684-35654918(-)$1	1	89	94	14.9999
(....	chr12:123875182-123875434(+)$1	1	75	80	14.9999
.....	chr1:235377140-235377440(-)$1	1	115	120	14.9999
(((..	chr11:62299022-62299287(-)$1	1	23	28	14.9999
)....	chr1:52305950-52306216(-)$1	1	118	123	14.9999
)))..	chr1:24979305-24979610(+)$1	1	148	153	14.9999
.....	chr1:46073885-46074159(+)$1	1	54	59	14.9999
(((((	chr14:102550936-102551166(-)$1	1	1	6	14.9999
...))	chr6:26056093-26056304(-)$1	1	88	93	14.9999
)....	chr6:44217991-44218199(+)$1	1	81	86	14.9999
)....	chr3:185649301-185649585(-)$1	1	120	125	14.9999
.....	chr5:34938907-34939215(+)$1	1	176	181	14.9999
)))))	chr1:150195411-150195663(-)$1	1	100	105	14.9999
.....	chr12:104341084-104341308(+)$1	1	7	12	14.9999
)))).	chr17:27000322-27000627(+)$1	1	136	141	14.9999
(((((	chr1:235383528-235383832(-)$1	1	159	164	14.9999
.....	chr11:62297626-62297874(-)$1	1	125	130	14.9999
.....	chr2:170493355-170493605(+)$1	1	130	135	14.9999
))...	chr1:150667051-150667419(-)$1	1	161	166	14.9999
)))..	chr16:2808432-2808649(+)$1	1	83	88	14.9999
.....	chr3:52725325-52725559(+)$1	1	75	80	14.9999
....)	chr1:150208007-150208284(-)$1	1	132	137	14.9999
.....	chr17:48823089-48823309(+)$1	1	12	17	14.9999
.))))	chr15:93480645-93480923(+)$1	1	127	132	14.9999
.....	chr2:27606810-27607042(-)$1	1	95	100	14.9999
)))))	chr10:120803465-120803698(-)$1	1	114	119	14.9999
)....	chr2:232327865-232328113(-)$1	1	140	145	14.9999
(((..	chr8:94748204-94748493(-)$1	1	5	10	14.9999
...))	chr6:4032730-4033057(+)$1	1	51	56	14.9999
.....	chr3:37368210-37368433(+)$1	1	42	47	14.9999
))...	chr9:100777576-100777789(+)$1	1	74	79	14.9999
.....	chr1:186305581-186305849(-)$1	1	164	169	14.9999
.....	chr16:89349825-89350099(-)$1	1	212	217	14.9999
.((((	chr12:42707575-42707879(-)$1	1	153	158	14.9999
(....	chr2:20491255-20491547(-)$1	1	14	19	14.9999
((((.	chrX:152956590-152956834(+)$1	1	133	138	14.9999
(....	chr1:171501389-171501661(+)$1	1	123	128	14.9999
...))	chr3:37368344-37368579(+)$1	1	10	15	14.9999
.....	chr19:5604556-5604805(-)$1	1	152	157	14.9999
(..((	chr19:11106869-11107151(+)$1	1	22	27	14.9999
)..))	chr6:99856946-99857186(-)$1	1	57	62	14.9999
(((.(	chr10:43311959-43312216(+)$1	1	107	112	14.9999
))...	chr21:39551005-39551266(+)$1	1	158	163	14.9999
.....	chr11:129992163-129992425(+)$1	1	61	66	14.9999
))...	chr9:100777545-100777749(+)$1	1	105	110	14.9999
..)))	chr2:170487227-170487539(+)$1	1	64	69	14.9999
))...	chr9:100777572-100777776(+)$1	1	78	83	14.9999
.....	chrX:118971824-118972100(-)$1	1	90	95	14.9999
...))	chrX:102612452-102612731(+)$1	1	107	112	14.9999
.....	chrX:64956939-64957170(+)$1	1	105	110	14.9999
)))))	chr1:205692995-205693210(-)$1	1	111	116	14.9999
))..(	chr1:193107126-193107400(+)$1	1	91	96	14.9999
.....	chr11:65267315-65267527(+)$1	1	4	9	14.9999
)))))	chr10:43291926-43292198(+)$1	1	71	76	14.9999
..)))	chr11:65267034-65267249(+)$1	1	77	82	14.9999
.....	chr11:65267144-65267346(+)$1	1	17	22	14.9999
.....	chr11:65267327-65267531(+)$1	1	83	88	14.9999
(((((	chr1:186313413-186313654(-)$1	1	70	75	14.9999
)))))	chr22:22843481-22843869(-)$1	1	164	169	14.9999
.(((.	chr18:47014815-47015036(-)$1	1	108	113	14.9999
.....	chr10:103920417-103920665(+)$1	1	8	13	14.9999
.....	chr5:149777817-149778116(+)$1	1	127	132	14.9999
.....	chr11:65827152-65827383(+)$1	1	35	40	14.9999
(.(.(	chr11:65268019-65268226(+)$1	1	18	23	14.9999
(....	chr11:65267561-65267779(+)$1	1	21	26	14.9999
((.((	chr14:24606628-24606875(+)$1	1	21	26	14.9999
(((((	chr8:17815054-17815308(+)$1	1	44	49	14.9999
.).))	chr1:186315289-186315521(-)$1	1	108	113	14.9999
(....	chr5:98212095-98212358(-)$1	1	196	201	14.9999
(....	chr1:245026819-245027077(-)$1	1	22	27	14.9999
.....	chr2:232325279-232325481(-)$1	1	2	7	14.9999

#PSSM
G : 0.74	g : 0.25	
A : 0.74	a : 0.25	
A : 0.74	a : 0.25	
G : 0.74	g : 0.25	
A : 0.74	a : 0.25	

#score	1169.9999999999998
#seq	78
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF324PNB_SSB_transcript_m2_run2.nuc.txt

#NT
GGAGGUGAGG	chr17:79661996-79662244(+)$1	248	97	107	21.1956
GGAGGUGAGU	chr14:20811337-20811539(-)$1	202	99	109	20.7608
GGAGGUGUGA	chr16:28883233-28883440(+)$1	207	76	86	15.6521
ggaugugagg	chr14:90178792-90179074(+)$1	282	62	72	18.0434
CGAGGUGAGG	chr19:10220854-10221065(+)$1	211	64	74	17.4999
ggauaugagg	chr8:144624220-144624424(+)$1	204	59	69	14.5652
GGAGGUGUGA	chr16:28883213-28883433(+)$1	220	96	106	15.6521
ggaugugagg	chr5:109035388-109035595(-)$1	207	60	70	18.0434
GGAGCUGAAU	chr2:86362978-86363198(+)$1	220	61	71	13.6956
GGAAGUGUGU	chr7:139025427-139025631(+)$1	204	168	178	13.5869
GAAGCUGAGG	chr9:35657831-35658033(-)$1	202	4	14	15.7608
UGAGCUGAGC	chr16:1365024-1365299(+)$1	275	82	92	12.3913
GGAGGGGAGG	chr19:49534839-49535143(-)$1	304	148	158	16.5217
GGAGGUGAGU	chr14:20811327-20811534(-)$1	207	94	104	20.7608
GGAGGUGAGU	chr14:20811400-20811612(-)$1	212	172	182	20.7608
GGAAGUGUGU	chr7:139025410-139025623(+)$1	213	185	195	13.5869
GAAGCUGAGG	chr9:35657871-35658107(-)$1	236	78	88	15.7608
GGAGGUGUGA	chr16:28883203-28883406(+)$1	203	106	116	15.6521
GGAGGUGAGU	chr14:20811323-20811527(-)$1	204	87	97	20.7608
GGAGGUGUGA	chr16:28883240-28883466(+)$1	226	69	79	15.6521
GGAGGUGAGU	chr14:20811340-20811544(-)$1	204	104	114	20.7608
ggaugugagg	chr5:109035360-109035588(-)$1	228	53	63	18.0434
GGAGGUGAGU	chr14:20811427-20811645(-)$1	218	205	215	20.7608
AGAAGUGAGU	chr12:6619586-6619797(+)$1	211	167	177	13.2608
GGAGCUGAAG	chr3:47451224-47451479(+)$1	255	193	203	14.1304
GGAGGCGAGG	chr16:50100112-50100325(+)$1	213	23	33	16.5217
GGAGUUGCGG	chr20:49225000-49225249(-)$1	249	183	193	13.4782
GGAGGUGAGU	chr14:20811368-20811578(-)$1	210	138	148	20.7608
ACAGGUGAGG	chr1:3689251-3689503(+)$1	252	97	107	13.9130
GAAUGUGAGc	chr22:23547931-23548185(+)$1	254	40	50	13.1521
gguugugagu	chr6:27599117-27599335(+)$1	218	147	157	12.9347
GGAGGUGAGU	chr14:20811347-20811550(-)$1	203	110	120	20.7608
CCAGGUGAGG	chr20:2443541-2443764(-)$1	223	26	36	14.1304
GAAGCUGAGG	chr9:35657833-35658037(-)$1	204	8	18	15.7608
GAAGCUGAGG	chr9:35657837-35658049(-)$1	212	20	30	15.7608
GGAGGUGAGU	chr14:20811335-20811537(-)$1	202	97	107	20.7608
UGAGGUGAUU	chr1:31440942-31441177(-)$1	235	30	40	12.3913
GACGGUGAGG	chr1:22149953-22150209(-)$1	256	25	35	13.8043
CGAGGUGAGG	chr19:10220829-10221054(+)$1	225	89	99	17.4999
GAAGCUGAGG	chr9:35657867-35658071(-)$1	204	42	52	15.7608
CCAGGUGAGU	chr16:88798878-88799093(-)$1	215	75	85	13.6956
GGAGGUGAGU	chr14:20811378-20811600(-)$1	222	160	170	20.7608
GAAGCUGAGG	chr9:35657825-35658030(-)$1	205	1	11	15.7608
GAAGGUGAGU	chrX:135961325-135961534(-)$1	209	53	63	18.0434
GGAGGUGACG	chr15:89878216-89878495(+)$1	279	40	50	16.7391

#otherMatches

#Struct PSSM
ccc"""eeee	chr8:144624224-144624462(+)$1	238	55	65	14.5652
ff]cccFFFF	chr17:79661996-79662244(+)$1	248	97	107	21.1956
hhhha[gggg	chr14:20811337-20811539(-)$1	202	99	109	20.7608
iiiiiiiiio	chr16:28883233-28883440(+)$1	207	76	86	15.6521
ccc[gggggg	chr14:90178792-90179074(+)$1	282	62	72	18.0434
==[dddd[ee	chr19:10220854-10221065(+)$1	211	64	74	17.4999
ccc"""eeee	chr8:144624220-144624424(+)$1	204	59	69	14.5652
iiiiiiiiio	chr16:28883213-28883433(+)$1	220	96	106	15.6521
hhh]ccc::g	chr5:109035388-109035595(-)$1	207	60	70	18.0434
ssffffffee	chr2:86362978-86363198(+)$1	220	61	71	13.6956
hhhhhhhbb]	chr7:139025427-139025631(+)$1	204	168	178	13.5869
EEEEE{A{CC	chr9:35657831-35658033(-)$1	202	4	14	15.7608
]ffffff:::	chr16:1365024-1365299(+)$1	275	82	92	12.3913
qqqqqq====	chr19:49534839-49535143(-)$1	304	148	158	16.5217
eeeooooooe	chr14:20811327-20811534(-)$1	207	94	104	20.7608
hhhhEEEEEH	chr14:20811400-20811612(-)$1	212	172	182	20.7608
beeeeeffff	chr7:139025410-139025623(+)$1	213	185	195	13.5869
c::::FFFFF	chr9:35657871-35658107(-)$1	236	78	88	15.7608
ffffddddoo	chr16:28883203-28883406(+)$1	203	106	116	15.6521
iiiii:::ee	chr14:20811323-20811527(-)$1	204	87	97	20.7608
ffffbb]ddd	chr16:28883240-28883466(+)$1	226	69	79	15.6521
hhhha[gggg	chr14:20811340-20811544(-)$1	204	104	114	20.7608
hhh]ccc::g	chr5:109035360-109035588(-)$1	228	53	63	18.0434
gggEEEEE}D	chr14:20811427-20811645(-)$1	218	205	215	20.7608
(((ccc[ccc	chr12:6619586-6619797(+)$1	211	167	177	13.2608
ccc]dddd77	chr3:47451224-47451479(+)$1	255	193	203	14.1304
cCCCIIIIII	chr16:50100112-50100325(+)$1	213	23	33	16.5217
boooooobb2	chr20:49225000-49225249(-)$1	249	183	193	13.4782
eeeooooooe	chr14:20811368-20811578(-)$1	210	138	148	20.7608
]a333bb]cc	chr1:3689251-3689503(+)$1	252	97	107	13.9130
b]ggggggg2	chr22:23547931-23548185(+)$1	254	40	50	13.1521
dqqqqqqqqd	chr6:27599117-27599335(+)$1	218	147	157	12.9347
iiiii:::dd	chr14:20811347-20811550(-)$1	203	110	120	20.7608
dd!!cccppp	chr20:2443541-2443764(-)$1	223	26	36	14.1304
dddd!!eeee	chr9:35657833-35658037(-)$1	204	8	18	15.7608
EEEEE{A{CC	chr9:35657837-35658049(-)$1	212	20	30	15.7608
hhhha[gggg	chr14:20811335-20811537(-)$1	202	97	107	20.7608
D{DDDD::::	chr1:31440942-31441177(-)$1	235	30	40	12.3913
qqqbb333ff	chr1:22149953-22150209(-)$1	256	25	35	13.8043
==[dddd[ee	chr19:10220829-10221054(+)$1	225	89	99	17.4999
dddd]bb:DD	chr9:35657867-35658071(-)$1	204	42	52	15.7608
ggggggccc"	chr16:88798878-88799093(-)$1	215	75	85	13.6956
dddd[a!!dd	chr14:20811378-20811600(-)$1	222	160	170	20.7608
EEEEE{A{CC	chr9:35657825-35658030(-)$1	205	1	11	15.7608
{BBKKFFFFF	chrX:135961325-135961534(-)$1	209	53	63	18.0434
CC{FFFFFFL	chr15:89878216-89878495(+)$1	279	40	50	16.7391

#DB
(((...((((	chr8:144624224-144624462(+)$1	1	55	65	14.5652
)).)))((((	chr17:79661996-79662244(+)$1	1	97	107	21.1956
))))(.((((	chr14:20811337-20811539(-)$1	1	99	109	20.7608
(((((((((.	chr16:28883233-28883440(+)$1	1	76	86	15.6521
(((.((((((	chr14:90178792-90179074(+)$1	1	62	72	18.0434
((.((((.((	chr19:10220854-10221065(+)$1	1	64	74	17.4999
(((...((((	chr8:144624220-144624424(+)$1	1	59	69	14.5652
(((((((((.	chr16:28883213-28883433(+)$1	1	96	106	15.6521
))).)))..(	chr5:109035388-109035595(-)$1	1	60	70	18.0434
..))))))((	chr2:86362978-86363198(+)$1	1	61	71	13.6956
))))))))).	chr7:139025427-139025631(+)$1	1	168	178	13.5869
(((((.(.((	chr9:35657831-35658033(-)$1	1	4	14	15.7608
.))))))...	chr16:1365024-1365299(+)$1	1	82	92	12.3913
......))))	chr19:49534839-49535143(-)$1	1	148	158	16.5217
(((......)	chr14:20811327-20811534(-)$1	1	94	104	20.7608
))))))))))	chr14:20811400-20811612(-)$1	1	172	182	20.7608
))))))))))	chr7:139025410-139025623(+)$1	1	185	195	13.5869
)....)))))	chr9:35657871-35658107(-)$1	1	78	88	15.7608
))))((((..	chr16:28883203-28883406(+)$1	1	106	116	15.6521
)))))...((	chr14:20811323-20811527(-)$1	1	87	97	20.7608
)))))).)))	chr16:28883240-28883466(+)$1	1	69	79	15.6521
))))(.((((	chr14:20811340-20811544(-)$1	1	104	114	20.7608
))).)))..(	chr5:109035360-109035588(-)$1	1	53	63	18.0434
)))))))).)	chr14:20811427-20811645(-)$1	1	205	215	20.7608
...(((.(((	chr12:6619586-6619797(+)$1	1	167	177	13.2608
))).))))..	chr3:47451224-47451479(+)$1	1	193	203	14.1304
)(((((((((	chr16:50100112-50100325(+)$1	1	23	33	16.5217
(......)).	chr20:49225000-49225249(-)$1	1	183	193	13.4782
(((......)	chr14:20811368-20811578(-)$1	1	138	148	20.7608
.)...)).))	chr1:3689251-3689503(+)$1	1	97	107	13.9130
).))))))).	chr22:23547931-23548185(+)$1	1	40	50	13.1521
(........)	chr6:27599117-27599335(+)$1	1	147	157	12.9347
)))))...((	chr14:20811347-20811550(-)$1	1	110	120	20.7608
((..(((...	chr20:2443541-2443764(-)$1	1	26	36	14.1304
((((..((((	chr9:35657833-35658037(-)$1	1	8	18	15.7608
(((((.(.((	chr9:35657837-35658049(-)$1	1	20	30	15.7608
))))(.((((	chr14:20811335-20811537(-)$1	1	97	107	20.7608
(.((((....	chr1:31440942-31441177(-)$1	1	30	40	12.3913
...))...))	chr1:22149953-22150209(-)$1	1	25	35	13.8043
((.((((.((	chr19:10220829-10221054(+)$1	1	89	99	17.4999
)))).)).((	chr9:35657867-35658071(-)$1	1	42	52	15.7608
))))))(((.	chr16:88798878-88799093(-)$1	1	75	85	13.6956
((((.(..((	chr14:20811378-20811600(-)$1	1	160	170	20.7608
(((((.(.((	chr9:35657825-35658030(-)$1	1	1	11	15.7608
.((..(((((	chrX:135961325-135961534(-)$1	1	53	63	18.0434
((.((((((.	chr15:89878216-89878495(+)$1	1	40	50	16.7391

#PSSM
G : 0.69	g : 0.13	C : 0.08	U : 0.04	A : 0.04	
G : 0.60	A : 0.19	g : 0.13	C : 0.06	
A : 0.84	a : 0.10	u : 0.02	C : 0.02	
G : 0.78	u : 0.13	A : 0.06	U : 0.02	
G : 0.65	C : 0.19	g : 0.08	a : 0.04	U : 0.02	
U : 0.82	u : 0.13	G : 0.02	C : 0.02	
G : 0.86	g : 0.13	
A : 0.71	a : 0.13	U : 0.13	C : 0.02	
G : 0.78	g : 0.13	A : 0.04	U : 0.02	C : 0.02	
G : 0.36	U : 0.36	g : 0.10	A : 0.08	C : 0.02	c : 0.02	u : 0.02	

#score	760.2173913043474
#seq	46
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_CDS_m3_run1.nuc.txt

#NT
ccucucccucccccuc	chr19:57742855-57743216(+)$1	361	81	97	21.7499
ccucuccuuucccauc	chr6:33179897-33180183(+)$1	286	12	28	18.1923
ccuccuccuccuccuc	chr14:63861885-63862163(-)$1	278	42	58	25.2115
ucucuuucucugccuc	chr19:47230735-47231015(-)$1	280	116	132	15.1153
CCUCAUUUCCAUCUUC	chr1:44442819-44443062(+)$1	243	195	211	15.1153
CUUCAUCUUUCCCUUC	chr3:99569355-99569605(+)$1	250	2	18	14.9230
CCUCAGAGUCCUCUUC	chrX:140994984-140995239(+)$1	255	39	55	16.6538
GCCCCUCUUCCUCCUG	chr1:176137729-176138051(-)$1	322	71	87	16.6538
UUUCUGUCUCCUCCUC	chr9:95277187-95277464(+)$1	277	27	43	15.7884
UCUCUCCUACCUCCUC	chr19:14274089-14274388(-)$1	299	132	148	20.9807
CCUCAGAGCCCUCCUC	chrX:140994886-140995168(+)$1	282	89	105	16.0769
CCUCUGCUUCCUCCGG	chr1:183516081-183516355(+)$1	274	171	187	19.4423
CCUCUCCGUCAUCCCC	chr19:38948391-38948797(+)$1	406	258	274	16.9423
CCUCUGCUUUAUCCUC	chr13:39587731-39588028(-)$1	297	96	112	21.3653
ucuuugccuccuucuc	chr1:149895803-149896065(-)$1	262	104	120	15.3076
UCUCCCCUUCCUCCCA	chr6:29599230-29599479(-)$1	249	20	36	16.1730
UCUCAUCUUGCACCUU	chr12:57114238-57114497(-)$1	259	102	118	15.4999
cuucuccuuccuccuc	chr2:70129351-70129626(+)$1	275	43	59	23.1923
CCUUGGCUGucuccuc	chr5:141046107-141046470(-)$1	363	90	106	14.6346
CCUCAGUUUCCUCCUC	chrX:140995258-140995521(+)$1	263	110	126	23.1923
CCUCUUCUUCUUCGUG	chr19:49838590-49838911(+)$1	321	263	279	19.2499
ccuucccuuccuccuu	chr5:176917484-176917744(-)$1	260	25	41	19.5384
UCUCAUAUUCAUCUUC	chr3:99568465-99568757(+)$1	292	82	98	16.2692
UCUCUUCUGGCUCCUG	chr2:74599930-74600252(-)$1	322	149	165	16.4615
ccuccucuccuucauc	chr19:48700362-48700680(-)$1	318	153	169	17.4230
CCUCUUUUUCAUUAUC	chr12:57113955-57114182(-)$1	227	76	92	15.9807
CCUUAUCUUUCUCCUU	chr6:43151926-43152177(+)$1	251	86	102	18.8653
UCUCCCCUUCCCCCUC	chr19:10400696-10400960(+)$1	264	239	255	20.6923
caucuuccuccuccuc	chr1:14107383-14107661(+)$1	278	76	92	22.2307
ccuccuuuuuuucauc	chr16:68324077-68324405(+)$1	328	86	102	16.1730
ucuucucuuucuucuc	chr12:42623919-42624162(-)$1	243	67	83	15.8846
CCCCUUCUUCCCUCUU	chr2:27558094-27558368(-)$1	274	122	138	14.3461
CUUCAUCCUCCCUCUC	chr2:179396809-179397115(+)$1	306	218	234	14.5384
ucucuuucucugccuc	chr19:47230815-47231086(-)$1	271	187	203	15.1153
ccucuuccuuuuccuu	chr5:112227540-112227837(-)$1	297	203	219	18.1923
ccucccugucuuccuc	chr10:102283774-102284050(-)$1	276	82	98	17.6153
CCUCUAAAUCCUCCUG	chr6:33286459-33286761(-)$1	302	109	125	16.8461
CCUUUUCUUCCCCUUC	chr3:48016829-48017117(-)$1	288	110	126	18.9615
ccucaucuuccuccuc	chr16:2819087-2819355(+)$1	268	89	105	27.7115
CCUUuucuuucuccuc	chr16:15696285-15696557(-)$1	272	48	64	22.9038
CCUCCCCUUCCUUCCA	chr12:57114100-57114359(-)$1	259	117	133	14.6346
UCucccuuuucuccuc	chrX:70352554-70352802(+)$1	248	35	51	18.8653
ucucuucuuucuccug	chr16:74339386-74339694(-)$1	308	152	168	21.3653
CCUCUCCUUGCCCCUG	chr6:32083600-32083965(-)$1	365	32	48	17.9038
CCUCAGAGCCCUCCUC	chrX:140994816-140995070(+)$1	254	18	34	16.0769
ccucuuccuccucuuc	chrX:21863302-21863595(+)$1	293	117	133	23.2884
ccucaucuuccuccuc	chr16:2819022-2819287(+)$1	265	154	170	27.7115
CCUCAUUUCCAUCUUC	chr1:44442979-44443300(+)$1	321	35	51	15.1153
caucuuccuccuccuc	chr1:14107344-14107583(+)$1	239	115	131	22.2307
ccucuucuuccuccuc	chr17:7369630-7369951(-)$1	321	114	130	28.7692
ACUCACCUUUUUUCUC	chr12:57115115-57115364(-)$1	249	63	79	13.8653

#otherMatches

#Struct PSSM
::::::EEEEE{CCC{	chr22:40749192-40749456(+)$1	264	102	118	18.9615
DDKKDDDDPPPPPPPC	chr19:57742855-57743216(+)$1	361	81	97	21.7499
::::::::::::::::	chr6:33179897-33180183(+)$1	286	12	28	18.1923
CCCCCCNNNNNCCC::	chr14:63861885-63862163(-)$1	278	42	58	25.2115
zzzzzzzzzzzbb:::	chr19:47230735-47231015(-)$1	280	116	132	15.1153
^^^^^^^^^^^^^^^^	chr1:44442819-44443062(+)$1	243	195	211	15.1153
::::::::::::::::	chr3:99569355-99569605(+)$1	250	2	18	14.9230
:CCC{CCCKKDDDD{E	chrX:140994984-140995239(+)$1	255	39	55	16.6538
ff::::::::::::FF	chr1:176137729-176138051(-)$1	322	71	87	16.6538
LLLEEEEE{GGGGGGG	chr9:95277187-95277464(+)$1	277	27	43	15.7884
99999bb7777777hh	chr19:14274089-14274388(-)$1	299	132	148	20.9807
vvvvvccc7777777e	chrX:140994886-140995168(+)$1	282	89	105	16.0769
eeeee[eeeee[ffff	chr1:183516081-183516355(+)$1	274	171	187	19.4423
eeeeiiiiiiiii!!d	chr19:38948391-38948797(+)$1	406	258	274	16.9423
^^^^^^^^^^^^^^^^	chr13:39587731-39588028(-)$1	297	96	112	21.3653
::::::::::::::::	chr1:149895803-149896065(-)$1	262	104	120	15.3076
HHHHHHH:::CCCGGG	chr6:29599230-29599479(-)$1	249	20	36	16.1730
:::::::::CCC}DDD	chr12:57114238-57114497(-)$1	259	102	118	15.4999
::::::::::::::::	chr2:70129351-70129626(+)$1	275	43	59	23.1923
qqqqccc:::::::::	chr5:141046107-141046470(-)$1	363	90	106	14.6346
ooooccc999999999	chrX:140995258-140995521(+)$1	263	110	126	23.1923
^^^^^^^^^ccc]eee	chr19:49838590-49838911(+)$1	321	263	279	19.2499
::::::::::::::::	chr5:176917484-176917744(-)$1	260	25	41	19.5384
]dddd55555dddd::	chr3:99568465-99568757(+)$1	292	82	98	16.2692
eeee[cccbb$$$$$f	chr2:74599930-74600252(-)$1	322	149	165	16.4615
::::::::::::::dd	chr19:48700362-48700680(-)$1	318	153	169	17.4230
^^^^^^^^^^^^^^^^	chr12:57113955-57114182(-)$1	227	76	92	15.9807
ccc%%%%%%ffffff[	chr6:43151926-43152177(+)$1	251	86	102	18.8653
::::::::::::::::	chr19:10400696-10400960(+)$1	264	239	255	20.6923
DDFFFFFF::::::JJ	chr1:14107383-14107661(+)$1	278	76	92	22.2307
^^^^^^^^^^^^^^^^	chr16:68324077-68324405(+)$1	328	86	102	16.1730
::::::::::::::::	chr12:42623919-42624162(-)$1	243	67	83	15.8846
:::::::::::::::f	chr2:27558094-27558368(-)$1	274	122	138	14.3461
dddd]ccc22bb]fff	chr2:179396809-179397115(+)$1	306	218	234	14.5384
::::::::::::::::	chr19:47230815-47231086(-)$1	271	187	203	15.1153
::::::::::::::cc	chr5:112227540-112227837(-)$1	297	203	219	18.1923
>>>>>>ccc22ccc22	chr10:102283774-102284050(-)$1	276	82	98	17.6153
JJJJJJJJJ:::::::	chr6:33286459-33286761(-)$1	302	109	125	16.8461
::::::::::::::::	chr3:48016829-48017117(-)$1	288	110	126	18.9615
:DDDDMMMMEEEEEKK	chr16:2819087-2819355(+)$1	268	89	105	27.7115
^^^^^^^^^^^^^^^^	chr16:15696285-15696557(-)$1	272	48	64	22.9038
555eeeee::::::HH	chr12:57114100-57114359(-)$1	259	117	133	14.6346
dd>>>>>>>>>>>>>>	chrX:70352554-70352802(+)$1	248	35	51	18.8653
++++++++++++eeee	chr16:74339386-74339694(-)$1	308	152	168	21.3653
::::::::cccmmmmc	chr6:32083600-32083965(-)$1	365	32	48	17.9038
:::::ccc[ggggggg	chrX:140994816-140995070(+)$1	254	18	34	16.0769
::::::::::::::::	chrX:21863302-21863595(+)$1	293	117	133	23.2884
:::::::::EEEEEKK	chr16:2819022-2819287(+)$1	265	154	170	27.7115
MMMBB:FFFFFFKKHH	chr1:44442979-44443300(+)$1	321	35	51	15.1153
::::::::::::::::	chr1:14107344-14107583(+)$1	239	115	131	22.2307
::::::::::::::::	chr17:7369630-7369951(-)$1	321	114	130	28.7692
^^^^^^^^^^^^^^^^	chr12:57115115-57115364(-)$1	249	63	79	13.8653

#DB
......(((((.(((.	chr22:40749192-40749456(+)$1	1	102	118	18.9615
((..((((.......(	chr19:57742855-57743216(+)$1	1	81	97	21.7499
................	chr6:33179897-33180183(+)$1	1	12	28	18.1923
((((((.....(((..	chr14:63861885-63862163(-)$1	1	42	58	25.2115
...........))...	chr19:47230735-47231015(-)$1	1	116	132	15.1153
................	chr1:44442819-44443062(+)$1	1	195	211	15.1153
................	chr3:99569355-99569605(+)$1	1	2	18	14.9230
.(((.(((..((((.(	chrX:140994984-140995239(+)$1	1	39	55	16.6538
))............))	chr1:176137729-176138051(-)$1	1	71	87	16.6538
...(((((.(((((((	chr9:95277187-95277464(+)$1	1	27	43	15.7884
.....)).......))	chr19:14274089-14274388(-)$1	1	132	148	20.9807
.....))).......)	chrX:140994886-140995168(+)$1	1	89	105	16.0769
(((((.(((((.((((	chr1:183516081-183516355(+)$1	1	171	187	19.4423
(((((((((((((..(	chr19:38948391-38948797(+)$1	1	258	274	16.9423
................	chr13:39587731-39588028(-)$1	1	96	112	21.3653
................	chr1:149895803-149896065(-)$1	1	104	120	15.3076
(((((((...((((((	chr6:29599230-29599479(-)$1	1	20	36	16.1730
.........))).)))	chr12:57114238-57114497(-)$1	1	102	118	15.4999
................	chr2:70129351-70129626(+)$1	1	43	59	23.1923
....))).........	chr5:141046107-141046470(-)$1	1	90	106	14.6346
....))).........	chrX:140995258-140995521(+)$1	1	110	126	23.1923
.........))).)))	chr19:49838590-49838911(+)$1	1	263	279	19.2499
................	chr5:176917484-176917744(-)$1	1	25	41	19.5384
.)))).....))))..	chr3:99568465-99568757(+)$1	1	82	98	16.2692
((((.(((((.....(	chr2:74599930-74600252(-)$1	1	149	165	16.4615
..............((	chr19:48700362-48700680(-)$1	1	153	169	17.4230
................	chr12:57113955-57114182(-)$1	1	76	92	15.9807
(((......((((((.	chr6:43151926-43152177(+)$1	1	86	102	18.8653
................	chr19:10400696-10400960(+)$1	1	239	255	20.6923
((((((((......((	chr1:14107383-14107661(+)$1	1	76	92	22.2307
................	chr16:68324077-68324405(+)$1	1	86	102	16.1730
................	chr12:42623919-42624162(-)$1	1	67	83	15.8846
...............(	chr2:27558094-27558368(-)$1	1	122	138	14.3461
)))).)))..)).)))	chr2:179396809-179397115(+)$1	1	218	234	14.5384
................	chr19:47230815-47231086(-)$1	1	187	203	15.1153
..............((	chr5:112227540-112227837(-)$1	1	203	219	18.1923
......)))..)))..	chr10:102283774-102284050(-)$1	1	82	98	17.6153
(((((((((.......	chr6:33286459-33286761(-)$1	1	109	125	16.8461
................	chr3:48016829-48017117(-)$1	1	110	126	18.9615
.((((....(((((..	chr16:2819087-2819355(+)$1	1	89	105	27.7115
................	chr16:15696285-15696557(-)$1	1	48	64	22.9038
...)))))......))	chr12:57114100-57114359(-)$1	1	117	133	14.6346
))..............	chrX:70352554-70352802(+)$1	1	35	51	18.8653
............((((	chr16:74339386-74339694(-)$1	1	152	168	21.3653
........(((....)	chr6:32083600-32083965(-)$1	1	32	48	17.9038
.....(((.(((((((	chrX:140994816-140995070(+)$1	1	18	34	16.0769
................	chrX:21863302-21863595(+)$1	1	117	133	23.2884
.........(((((..	chr16:2819022-2819287(+)$1	1	154	170	27.7115
...((.((((((..((	chr1:44442979-44443300(+)$1	1	35	51	15.1153
................	chr1:14107344-14107583(+)$1	1	115	131	22.2307
................	chr17:7369630-7369951(-)$1	1	114	130	28.7692
................	chr12:57115115-57115364(-)$1	1	63	79	13.8653

#PSSM
C : 0.40	c : 0.28	U : 0.15	u : 0.11	G : 0.01	A : 0.01	
C : 0.53	c : 0.34	U : 0.05	a : 0.03	u : 0.01	
U : 0.53	u : 0.42	C : 0.03	
C : 0.49	c : 0.34	u : 0.07	U : 0.07	
u : 0.24	A : 0.23	U : 0.23	c : 0.15	C : 0.07	a : 0.03	G : 0.01	
u : 0.30	U : 0.24	G : 0.15	C : 0.13	c : 0.11	g : 0.01	A : 0.01	
C : 0.36	c : 0.34	u : 0.09	U : 0.09	A : 0.09	
U : 0.42	u : 0.24	c : 0.17	G : 0.07	C : 0.03	g : 0.01	A : 0.01	
u : 0.42	U : 0.42	C : 0.07	G : 0.03	A : 0.01	c : 0.01	
C : 0.40	c : 0.30	u : 0.15	U : 0.07	G : 0.05	
C : 0.38	c : 0.34	u : 0.11	A : 0.11	U : 0.03	
U : 0.40	u : 0.38	C : 0.11	c : 0.03	g : 0.03	A : 0.01	
C : 0.44	c : 0.42	U : 0.09	u : 0.03	
c : 0.38	C : 0.38	U : 0.11	a : 0.05	G : 0.01	A : 0.01	u : 0.01	
u : 0.46	U : 0.46	C : 0.05	G : 0.01	
c : 0.38	C : 0.32	G : 0.11	u : 0.05	U : 0.05	A : 0.03	g : 0.01	

#score	965.9999999999995
#seq	52
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_CDS_m3_run2.nuc.txt

#NT
AAGAGAAA	chr3:42685354-42685595(+)$1	241	225	233	16.4107
ACAAGAAA	chr4:151836659-151836919(-)$1	260	219	227	15.7857
AACAGAAA	chr3:37368969-37369253(+)$1	284	223	231	16.5000
AAGAGAAA	chr1:70716293-70716565(+)$1	272	46	54	16.4107
AAAAGAAA	chr7:91630821-91631078(+)$1	257	221	229	20.1607
AACAGAAA	chr6:111696966-111697249(-)$1	283	40	48	16.5000
AAAAUAAA	chr4:187629222-187629469(-)$1	247	198	206	15.9642
UAAAGAAA	chr21:34132074-34132305(-)$1	231	196	204	16.1428
AAAACAAA	chr6:56436797-56437029(-)$1	232	76	84	15.9642
AAAAGAAC	chr20:49509600-49509876(-)$1	276	23	31	15.5178
AAGAGAAA	chr10:64967417-64967659(-)$1	242	81	89	16.4107
AAAAUAAA	chr8:100108495-100108761(+)$1	266	31	39	15.9642
UAAAGAAA	chr2:71576665-71576929(+)$1	264	3	11	16.1428
ACAAGAAA	chr5:140032542-140032830(+)$1	288	40	48	15.7857
AAAAGGAA	chr12:44148624-44148895(-)$1	271	163	171	16.0535
AAAAGCAA	chrX:41007521-41007774(+)$1	253	122	130	16.0535
AAAUGAAA	chr9:6792936-6793233(+)$1	297	217	225	15.7857
AAAAGAAA	chr1:171484796-171485045(+)$1	249	143	151	20.1607
AAAAGAAA	chr1:155450442-155450719(-)$1	277	189	197	20.1607
AAAAGCAA	chr17:37565183-37565475(-)$1	292	11	19	16.0535
AAAUGAAA	chr8:94748208-94748489(-)$1	281	101	109	15.7857
AGAAGAAA	chr8:53570127-53570397(-)$1	270	231	239	15.7857
AAAUGAAA	chr8:17882817-17883050(+)$1	233	195	203	15.7857
AAAACAAA	chr14:71444439-71444698(+)$1	259	149	157	15.9642
AAUAGAAA	chr11:32953351-32953629(+)$1	278	44	52	16.1428
AAAAGAAA	chr6:56489855-56490116(-)$1	261	198	206	20.1607
AAAAGAGA	chr21:37741735-37741988(+)$1	253	57	65	15.3392
AUAAGAAA	chr10:19884022-19884244(+)$1	222	14	22	15.6964
AAAAGAAA	chr4:13605101-13605400(-)$1	299	64	72	20.1607
AAAAGGAA	chr15:40915349-40915603(+)$1	254	9	17	16.0535
AACAGAAA	chr13:42875949-42876182(+)$1	233	195	203	16.5000
AAAAGAAA	chr12:112757019-112757328(-)$1	309	255	263	20.1607
AAAACAAA	chr1:214819557-214819784(+)$1	227	3	11	15.9642
AAAAGAAA	chr2:153486306-153486518(+)$1	212	124	132	20.1607
AAAAGAAA	chr8:53554911-53555153(-)$1	242	47	55	20.1607
AAAAGAAA	chr4:39324859-39325099(-)$1	240	16	24	20.1607
AGAAGAAA	chr16:4910605-4910906(+)$1	301	94	102	15.7857
GAAAGAAA	chr1:155451381-155451637(-)$1	256	94	102	16.1428
AAAAGAAA	chr7:91712445-91712667(+)$1	222	40	48	20.1607
AAAAGAAA	chr1:40704761-40705000(+)$1	239	180	188	20.1607
AAAAGAAA	chr10:123970324-123970647(+)$1	323	22	30	20.1607
CAAAGAAA	chr19:32843663-32843922(+)$1	259	178	186	16.0535
AAAAGCAA	chr2:152319642-152319856(+)$1	214	180	188	16.0535
AAAAGGAA	chr3:121409922-121410205(-)$1	283	6	14	16.0535
AAAAGAAC	chr6:144774819-144775105(+)$1	286	106	114	15.5178
UAAAGAAA	chr1:197071673-197071958(-)$1	285	212	220	16.1428
GAAAGAAA	chr2:198267413-198267642(-)$1	229	28	36	16.1428
AAGAGAAA	chr5:140698996-140699256(-)$1	260	21	29	16.4107
AACAGAAA	chr4:6864439-6864686(+)$1	247	66	74	16.5000
AAACGAAA	chr2:232325101-232325352(-)$1	251	100	108	15.6071
AAAAUAAA	chr12:112750731-112750982(-)$1	251	153	161	15.9642
CAAAGAAA	chr2:153530011-153530220(-)$1	209	38	46	16.0535
AAAAGUAA	chr2:152330377-152330590(+)$1	213	34	42	15.8750
AAAAGAAA	chr6:76372836-76373100(+)$1	264	51	59	20.1607
GAAAGAAA	chr2:96521313-96521586(-)$1	273	191	199	16.1428

#otherMatches

#Struct PSSM
KKHHHHHH	chr19:58772776-58773021(+)$1	245	140	148	16.5000
}BB?????	chr3:42685354-42685595(+)$1	241	225	233	16.4107
pppppiii	chr4:151836659-151836919(-)$1	260	219	227	15.7857
55bb333i	chr3:37368969-37369253(+)$1	284	223	231	16.5000
LBB{ANNN	chr1:70716293-70716565(+)$1	272	46	54	16.4107
::::::::	chr7:91630821-91631078(+)$1	257	221	229	20.1607
wwwwdddd	chr6:111696966-111697249(-)$1	283	40	48	16.5000
e:::::II	chr4:187629222-187629469(-)$1	247	198	206	15.9642
II//////	chr21:34132074-34132305(-)$1	231	196	204	16.1428
"""eeeee	chr6:56436797-56437029(-)$1	232	76	84	15.9642
CMMMMFFF	chr20:49509600-49509876(-)$1	276	23	31	15.5178
::CCCKKE	chr10:64967417-64967659(-)$1	242	81	89	16.4107
vvvvvvvv	chr8:100108495-100108761(+)$1	266	31	39	15.9642
::::::::	chr2:71576665-71576929(+)$1	264	3	11	16.1428
3bb]bbee	chr5:140032542-140032830(+)$1	288	40	48	15.7857
::::eeee	chr12:44148624-44148895(-)$1	271	163	171	16.0535
========	chrX:41007521-41007774(+)$1	253	122	130	16.0535
oa]dddd:	chr9:6792936-6793233(+)$1	297	217	225	15.7857
>>>>>>>>	chr1:171484796-171485045(+)$1	249	143	151	20.1607
^^^^^^^^	chr1:155450442-155450719(-)$1	277	189	197	20.1607
c"""bbqq	chr17:37565183-37565475(-)$1	292	11	19	16.0535
eee]bb::	chr8:94748208-94748489(-)$1	281	101	109	15.7857
cc[cccss	chr8:53570127-53570397(-)$1	270	231	239	15.7857
:IIIIIII	chr8:17882817-17883050(+)$1	233	195	203	15.7857
hh''''''	chr14:71444439-71444698(+)$1	259	149	157	15.9642
eeqqqqqq	chr11:32953351-32953629(+)$1	278	44	52	16.1428
ssssssss	chr6:56489855-56490116(-)$1	261	198	206	20.1607
::::::::	chr21:37741735-37741988(+)$1	253	57	65	15.3392
VVVVVVVE	chr10:19884022-19884244(+)$1	222	14	22	15.6964
b'''''''	chr4:13605101-13605400(-)$1	299	64	72	20.1607
OOOOHHHH	chr15:40915349-40915603(+)$1	254	9	17	16.0535
::::::::	chr13:42875949-42876182(+)$1	233	195	203	16.5000
rrrrrrrr	chr12:112757019-112757328(-)$1	309	255	263	20.1607
::::::::	chr1:214819557-214819784(+)$1	227	3	11	15.9642
::::::::	chr2:153486306-153486518(+)$1	212	124	132	20.1607
555eeeee	chr8:53554911-53555153(-)$1	242	47	55	20.1607
FFFFF:::	chr4:39324859-39325099(-)$1	240	16	24	20.1607
ddddoooo	chr16:4910605-4910906(+)$1	301	94	102	15.7857
CCNNNNNE	chr1:155451381-155451637(-)$1	256	94	102	16.1428
RRRRRRRR	chr7:91712445-91712667(+)$1	222	40	48	20.1607
qqqqbbee	chr1:40704761-40705000(+)$1	239	180	188	20.1607
WWWWWWWW	chr10:123970324-123970647(+)$1	323	22	30	20.1607
b:::::::	chr19:32843663-32843922(+)$1	259	178	186	16.0535
d]dddd44	chr2:152319642-152319856(+)$1	214	180	188	16.0535
EKKCCC::	chr3:121409922-121410205(-)$1	283	6	14	16.0535
^^^^^^^^	chr6:144774819-144775105(+)$1	286	106	114	15.5178
fffff::H	chr1:197071673-197071958(-)$1	285	212	220	16.1428
Hffffffc	chr2:198267413-198267642(-)$1	229	28	36	16.1428
FFFFFF::	chr5:140698996-140699256(-)$1	260	21	29	16.4107
::eeeeeq	chr4:6864439-6864686(+)$1	247	66	74	16.5000
vvvvvvvv	chr2:232325101-232325352(-)$1	251	100	108	15.6071
>>>>>>>i	chr12:112750731-112750982(-)$1	251	153	161	15.9642
C{FFFFFF	chr2:153530011-153530220(-)$1	209	38	46	16.0535
::::ffff	chr2:152330377-152330590(+)$1	213	34	42	15.8750
=======[	chr6:76372836-76373100(+)$1	264	51	59	20.1607
g(((((((	chr2:96521313-96521586(-)$1	273	191	199	16.1428

#DB
..((((((	chr19:58772776-58773021(+)$1	1	140	148	16.5000
.)).....	chr3:42685354-42685595(+)$1	1	225	233	16.4107
.....)))	chr4:151836659-151836919(-)$1	1	219	227	15.7857
..))...)	chr3:37368969-37369253(+)$1	1	223	231	16.5000
.((.(...	chr1:70716293-70716565(+)$1	1	46	54	16.4107
........	chr7:91630821-91631078(+)$1	1	221	229	20.1607
....))))	chr6:111696966-111697249(-)$1	1	40	48	16.5000
).....))	chr4:187629222-187629469(-)$1	1	198	206	15.9642
))......	chr21:34132074-34132305(-)$1	1	196	204	16.1428
...(((((	chr6:56436797-56437029(-)$1	1	76	84	15.9642
(....(((	chr20:49509600-49509876(-)$1	1	23	31	15.5178
..(((..(	chr10:64967417-64967659(-)$1	1	81	89	16.4107
........	chr8:100108495-100108761(+)$1	1	31	39	15.9642
........	chr2:71576665-71576929(+)$1	1	3	11	16.1428
.)).))))	chr5:140032542-140032830(+)$1	1	40	48	15.7857
....((((	chr12:44148624-44148895(-)$1	1	163	171	16.0535
))))))))	chrX:41007521-41007774(+)$1	1	122	130	16.0535
.).)))).	chr9:6792936-6793233(+)$1	1	217	225	15.7857
........	chr1:171484796-171485045(+)$1	1	143	151	20.1607
........	chr1:155450442-155450719(-)$1	1	189	197	20.1607
(...((..	chr17:37565183-37565475(-)$1	1	11	19	16.0535
))).))..	chr8:94748208-94748489(-)$1	1	101	109	15.7857
((.(((..	chr8:53570127-53570397(-)$1	1	231	239	15.7857
.)))))))	chr8:17882817-17883050(+)$1	1	195	203	15.7857
((......	chr14:71444439-71444698(+)$1	1	149	157	15.9642
((......	chr11:32953351-32953629(+)$1	1	44	52	16.1428
........	chr6:56489855-56490116(-)$1	1	198	206	20.1607
........	chr21:37741735-37741988(+)$1	1	57	65	15.3392
.......(	chr10:19884022-19884244(+)$1	1	14	22	15.6964
(.......	chr4:13605101-13605400(-)$1	1	64	72	20.1607
....((((	chr15:40915349-40915603(+)$1	1	9	17	16.0535
........	chr13:42875949-42876182(+)$1	1	195	203	16.5000
........	chr12:112757019-112757328(-)$1	1	255	263	20.1607
........	chr1:214819557-214819784(+)$1	1	3	11	15.9642
........	chr2:153486306-153486518(+)$1	1	124	132	20.1607
...)))))	chr8:53554911-53555153(-)$1	1	47	55	20.1607
(((((...	chr4:39324859-39325099(-)$1	1	16	24	20.1607
((((....	chr16:4910605-4910906(+)$1	1	94	102	15.7857
((.....(	chr1:155451381-155451637(-)$1	1	94	102	16.1428
........	chr7:91712445-91712667(+)$1	1	40	48	20.1607
....))))	chr1:40704761-40705000(+)$1	1	180	188	20.1607
........	chr10:123970324-123970647(+)$1	1	22	30	20.1607
).......	chr19:32843663-32843922(+)$1	1	178	186	16.0535
).))))..	chr2:152319642-152319856(+)$1	1	180	188	16.0535
(..(((..	chr3:121409922-121410205(-)$1	1	6	14	16.0535
........	chr6:144774819-144775105(+)$1	1	106	114	15.5178
)))))..)	chr1:197071673-197071958(-)$1	1	212	220	16.1428
((((((((	chr2:198267413-198267642(-)$1	1	28	36	16.1428
((((((..	chr5:140698996-140699256(-)$1	1	21	29	16.4107
..(((((.	chr4:6864439-6864686(+)$1	1	66	74	16.5000
........	chr2:232325101-232325352(-)$1	1	100	108	15.6071
.......)	chr12:112750731-112750982(-)$1	1	153	161	15.9642
(.((((((	chr2:153530011-153530220(-)$1	1	38	46	16.0535
....((((	chr2:152330377-152330590(+)$1	1	34	42	15.8750
(((((((.	chr6:76372836-76373100(+)$1	1	51	59	20.1607
(.......	chr2:96521313-96521586(-)$1	1	191	199	16.1428

#PSSM
A : 0.85	U : 0.05	G : 0.05	C : 0.03	
A : 0.91	C : 0.03	G : 0.03	U : 0.01	
A : 0.82	C : 0.08	G : 0.07	U : 0.01	
A : 0.92	U : 0.05	C : 0.01	
G : 0.89	U : 0.05	C : 0.05	
A : 0.87	G : 0.05	C : 0.05	U : 0.01	
A : 0.98	G : 0.01	
A : 0.96	C : 0.03	

#score	951.5000000000008
#seq	56
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_UTR_m2_run1.nuc.txt

#NT
GGAG	chr20:62572714-62572939(-)$1	225	91	95	12.0000
GGAG	chr4:83294795-83295071(-)$1	276	20	24	12.0000
GGAG	chr22:20073340-20073652(+)$1	312	148	152	12.0000
GGAG	chr14:54421086-54421341(-)$1	255	16	20	12.0000
GGAG	chr9:139942693-139942941(-)$1	248	117	121	12.0000
GGAG	chr10:75578138-75578480(-)$1	342	52	56	12.0000
GGAG	chr17:46128250-46128543(+)$1	293	24	28	12.0000
GGAG	chr8:144678424-144678676(-)$1	252	57	61	12.0000
GGAG	chr11:61583453-61583743(-)$1	290	49	53	12.0000
GGAG	chr16:29910357-29910691(-)$1	334	31	35	12.0000
GGAG	chr3:195635536-195635820(-)$1	284	9	13	12.0000
ggag	chr16:447640-447883(+)$1	243	42	46	12.0000
GGAG	chr2:95824670-95825016(-)$1	346	14	18	12.0000
GGAG	chr7:150066650-150066963(+)$1	313	22	26	12.0000
GGAG	chr8:126011311-126011561(+)$1	250	62	66	12.0000
GGAG	chr2:55646579-55646907(-)$1	328	59	63	12.0000
GGAG	chr22:42298876-42299110(+)$1	234	14	18	12.0000
GGAG	chr17:28443794-28444129(+)$1	335	30	34	12.0000
GGAG	chr9:97848852-97849069(+)$1	217	25	29	12.0000
GGAG	chr17:38077849-38078136(-)$1	287	11	15	12.0000
GGAG	chr3:49058407-49058718(-)$1	311	87	91	12.0000
GGAG	chr16:4744640-4744925(+)$1	285	49	53	12.0000
GGAG	chr17:57917964-57918187(+)$1	223	217	221	12.0000
GGAG	chr16:30014607-30014921(+)$1	314	13	17	12.0000
ggag	chr11:111170454-111170773(+)$1	319	17	21	12.0000
GGAG	chr1:36787418-36787740(+)$1	322	123	127	12.0000
GGAG	chr6:128327053-128327395(-)$1	342	194	198	12.0000
GGAG	chr12:109124824-109125115(-)$1	291	30	34	12.0000
GGAG	chr14:105259204-105259495(-)$1	291	1	5	12.0000
GGAG	chr21:34941988-34942267(+)$1	279	0	4	12.0000
GGAG	chr17:46127991-46128245(+)$1	254	6	10	12.0000
GGAG	chr12:6797748-6798056(-)$1	308	9	13	12.0000
GGAG	chr11:27493945-27494208(-)$1	263	52	56	12.0000
GGAG	chr10:75578348-75578622(-)$1	274	100	104	12.0000
GGAG	chr16:29985280-29985588(+)$1	308	71	75	12.0000
GGAG	chr2:191513917-191514189(+)$1	272	1	5	12.0000
GGAG	chr2:202001789-202002080(+)$1	291	0	4	12.0000
GGAG	chr20:42142928-42143284(+)$1	356	222	226	12.0000
GGAG	chr17:57918152-57918391(+)$1	239	29	33	12.0000
GGAG	chr19:1104347-1104641(+)$1	294	138	142	12.0000
GGAG	chr19:56652951-56653258(+)$1	307	23	27	12.0000
GGAG	chr19:18547995-18548280(-)$1	285	34	38	12.0000
GGAG	chr19:46522367-46522729(+)$1	362	5	9	12.0000
GGAG	chr19:41770831-41771102(+)$1	271	37	41	12.0000
GGAG	chr20:62331312-62331612(-)$1	300	1	5	12.0000
GGAG	chr12:125270543-125270859(-)$1	316	54	58	12.0000
ggag	chr3:49045382-49045635(+)$1	253	1	5	12.0000
GGAG	chr2:153574597-153574864(+)$1	267	65	69	12.0000
GGAG	chr2:3461836-3462116(+)$1	280	27	31	12.0000
GGAG	chr10:105154020-105154252(-)$1	232	39	43	12.0000
GGAG	chr14:24036469-24036749(-)$1	280	70	74	12.0000
GGAG	chr17:57918318-57918540(+)$1	222	103	107	12.0000
GGAG	chr17:28444025-28444251(+)$1	226	53	57	12.0000
GGAG	chr14:103574564-103574856(+)$1	292	21	25	12.0000
GGAG	chr11:35286743-35287081(-)$1	338	205	209	12.0000
GGAG	chr22:46508667-46508962(+)$1	295	84	88	12.0000
GGAG	chr16:2579858-2580126(+)$1	268	35	39	12.0000
GGAG	chr19:46522267-46522513(+)$1	246	48	52	12.0000
GGAG	chr8:144678715-144679006(-)$1	291	119	123	12.0000
ggag	chr8:8243809-8244096(-)$1	287	54	58	12.0000
GGAG	chr22:42298833-42299076(+)$1	243	57	61	12.0000
GGAG	chr3:184080506-184080782(+)$1	276	0	4	12.0000
GGAG	chr10:21785879-21786125(-)$1	246	83	87	12.0000
GGAG	chr17:74380172-74380436(+)$1	264	130	134	12.0000
GGAG	chr17:57918052-57918290(+)$1	238	129	133	12.0000
GGAG	chr3:42661364-42661641(+)$1	277	68	72	12.0000
GGAG	chr9:35690814-35691080(-)$1	266	62	66	12.0000
GGAG	chr7:128828630-128828912(+)$1	282	19	23	12.0000
GGAG	chr17:57918123-57918349(+)$1	226	58	62	12.0000
GGAG	chr22:41487773-41488046(+)$1	273	40	44	12.0000
GGAG	chr2:97535510-97535793(-)$1	283	10	14	12.0000
GGAG	chr16:87738792-87739095(-)$1	303	65	69	12.0000
ggag	chr12:391395-391697(-)$1	302	268	272	12.0000
ggag	chr17:38278472-38278736(+)$1	264	37	41	12.0000
GGAG	chrX:153236893-153237214(-)$1	321	63	67	12.0000
GGAG	chr9:139743347-139743679(+)$1	332	13	17	12.0000
GGAG	chr17:36925639-36925933(-)$1	294	43	47	12.0000
GGAG	chr9:97848101-97848370(+)$1	269	59	63	12.0000
GGAG	chr12:1909051-1909335(-)$1	284	12	16	12.0000
GGAG	chr12:7037369-7037645(+)$1	276	81	85	12.0000
GGAG	chr2:95825077-95825373(-)$1	296	61	65	12.0000
ggag	chr9:80646056-80646331(-)$1	275	41	45	12.0000
GGAG	chr12:58217991-58218476(-)$1	485	75	79	12.0000
GGAG	chr3:195635357-195635616(-)$1	259	22	26	12.0000
GGAG	chr3:49058149-49058382(-)$1	233	65	69	12.0000
ggag	chr18:20799080-20799321(+)$1	241	102	106	12.0000
GGAG	chr9:139904664-139905000(-)$1	336	0	4	12.0000
ggag	chr12:391330-391595(-)$1	265	166	170	12.0000
GGAG	chr16:2579518-2579772(+)$1	254	108	112	12.0000
GGAG	chr15:34678935-34679214(-)$1	279	6	10	12.0000
ggag	chr9:35690529-35690784(-)$1	255	7	11	12.0000

#otherMatches

#Struct PSSM
oooo	chr17:38083346-38083608(-)$1	262	24	28	12.0000
gggg	chr20:62572714-62572939(-)$1	225	91	95	12.0000
&&&&	chr4:83294795-83295071(-)$1	276	20	24	12.0000
GGGG	chr22:20073340-20073652(+)$1	312	148	152	12.0000
eeee	chr14:54421086-54421341(-)$1	255	16	20	12.0000
eeee	chr9:139942693-139942941(-)$1	248	117	121	12.0000
nddd	chr10:75578138-75578480(-)$1	342	52	56	12.0000
IIII	chr17:46128250-46128543(+)$1	293	24	28	12.0000
!!cc	chr8:144678424-144678676(-)$1	252	57	61	12.0000
2ddd	chr11:61583453-61583743(-)$1	290	49	53	12.0000
qqqd	chr16:29910357-29910691(-)$1	334	31	35	12.0000
FF:C	chr3:195635536-195635820(-)$1	284	9	13	12.0000
BKKC	chr16:447640-447883(+)$1	243	42	46	12.0000
AKKD	chr2:95824670-95825016(-)$1	346	14	18	12.0000
GGGe	chr7:150066650-150066963(+)$1	313	22	26	12.0000
JJJJ	chr8:126011311-126011561(+)$1	250	62	66	12.0000
mmmd	chr2:55646579-55646907(-)$1	328	59	63	12.0000
LLLF	chr22:42298876-42299110(+)$1	234	14	18	12.0000
f::c	chr17:28443794-28444129(+)$1	335	30	34	12.0000
ffff	chr9:97848852-97849069(+)$1	217	25	29	12.0000
nnhh	chr17:38077849-38078136(-)$1	287	11	15	12.0000
eecc	chr3:49058407-49058718(-)$1	311	87	91	12.0000
]fff	chr16:4744640-4744925(+)$1	285	49	53	12.0000
GGGG	chr17:57917964-57918187(+)$1	223	217	221	12.0000
b'''	chr16:30014607-30014921(+)$1	314	13	17	12.0000
PPPD	chr11:111170454-111170773(+)$1	319	17	21	12.0000
nna]	chr1:36787418-36787740(+)$1	322	123	127	12.0000
ccee	chr6:128327053-128327395(-)$1	342	194	198	12.0000
b[bb	chr12:109124824-109125115(-)$1	291	30	34	12.0000
::::	chr14:105259204-105259495(-)$1	291	1	5	12.0000
A{BB	chr21:34941988-34942267(+)$1	279	0	4	12.0000
eeee	chr17:46127991-46128245(+)$1	254	6	10	12.0000
tttt	chr12:6797748-6798056(-)$1	308	9	13	12.0000
bmmm	chr11:27493945-27494208(-)$1	263	52	56	12.0000
====	chr10:75578348-75578622(-)$1	274	100	104	12.0000
:::J	chr16:29985280-29985588(+)$1	308	71	75	12.0000
cc[b	chr2:191513917-191514189(+)$1	272	1	5	12.0000
:::C	chr2:202001789-202002080(+)$1	291	0	4	12.0000
ee!!	chr20:42142928-42143284(+)$1	356	222	226	12.0000
DDDD	chr17:57918152-57918391(+)$1	239	29	33	12.0000
e[cc	chr19:1104347-1104641(+)$1	294	138	142	12.0000
c[ao	chr19:56652951-56653258(+)$1	307	23	27	12.0000
####	chr19:18547995-18548280(-)$1	285	34	38	12.0000
FFFK	chr19:46522367-46522729(+)$1	362	5	9	12.0000
HKKD	chr19:41770831-41771102(+)$1	271	37	41	12.0000
::A{	chr20:62331312-62331612(-)$1	300	1	5	12.0000
dd]d	chr12:125270543-125270859(-)$1	316	54	58	12.0000
::::	chr3:49045382-49045635(+)$1	253	1	5	12.0000
eeee	chr2:153574597-153574864(+)$1	267	65	69	12.0000
CC{C	chr2:3461836-3462116(+)$1	280	27	31	12.0000
hhhh	chr10:105154020-105154252(-)$1	232	39	43	12.0000
EE::	chr14:24036469-24036749(-)$1	280	70	74	12.0000
iiii	chr17:57918318-57918540(+)$1	222	103	107	12.0000
====	chr17:28444025-28444251(+)$1	226	53	57	12.0000
fppp	chr14:103574564-103574856(+)$1	292	21	25	12.0000
:::d	chr11:35286743-35287081(-)$1	338	205	209	12.0000
mmmm	chr22:46508667-46508962(+)$1	295	84	88	12.0000
bb::	chr16:2579858-2580126(+)$1	268	35	39	12.0000
qqqa	chr19:46522267-46522513(+)$1	246	48	52	12.0000
ff%%	chr8:144678715-144679006(-)$1	291	119	123	12.0000
EA{F	chr8:8243809-8244096(-)$1	287	54	58	12.0000
ff[d	chr22:42298833-42299076(+)$1	243	57	61	12.0000
::FF	chr3:184080506-184080782(+)$1	276	0	4	12.0000
[ccc	chr10:21785879-21786125(-)$1	246	83	87	12.0000
GGGY	chr17:74380172-74380436(+)$1	264	130	134	12.0000
ee44	chr17:57918052-57918290(+)$1	238	129	133	12.0000
iiii	chr3:42661364-42661641(+)$1	277	68	72	12.0000
bb[d	chr9:35690814-35691080(-)$1	266	62	66	12.0000
gggg	chr7:128828630-128828912(+)$1	282	19	23	12.0000
ee44	chr17:57918123-57918349(+)$1	226	58	62	12.0000
vvvv	chr22:41487773-41488046(+)$1	273	40	44	12.0000
B{EE	chr2:97535510-97535793(-)$1	283	10	14	12.0000
:A{I	chr16:87738792-87739095(-)$1	303	65	69	12.0000
JJJJ	chr12:391395-391697(-)$1	302	268	272	12.0000
DDDD	chr17:38278472-38278736(+)$1	264	37	41	12.0000
dddd	chrX:153236893-153237214(-)$1	321	63	67	12.0000
FFFF	chr9:139743347-139743679(+)$1	332	13	17	12.0000
CC{D	chr17:36925639-36925933(-)$1	294	43	47	12.0000
cc[h	chr9:97848101-97848370(+)$1	269	59	63	12.0000
{ALL	chr12:1909051-1909335(-)$1	284	12	16	12.0000
DD{A	chr12:7037369-7037645(+)$1	276	81	85	12.0000
gppp	chr2:95825077-95825373(-)$1	296	61	65	12.0000
ddqq	chr9:80646056-80646331(-)$1	275	41	45	12.0000
gg[c	chr12:58217991-58218476(-)$1	485	75	79	12.0000
NEEE	chr3:195635357-195635616(-)$1	259	22	26	12.0000
hhhh	chr3:49058149-49058382(-)$1	233	65	69	12.0000
hhhh	chr18:20799080-20799321(+)$1	241	102	106	12.0000
::dd	chr9:139904664-139905000(-)$1	336	0	4	12.0000
:EEE	chr12:391330-391595(-)$1	265	166	170	12.0000
gggn	chr16:2579518-2579772(+)$1	254	108	112	12.0000
HHHH	chr15:34678935-34679214(-)$1	279	6	10	12.0000
FFFF	chr9:35690529-35690784(-)$1	255	7	11	12.0000

#DB
....	chr17:38083346-38083608(-)$1	1	24	28	12.0000
))))	chr20:62572714-62572939(-)$1	1	91	95	12.0000
....	chr4:83294795-83295071(-)$1	1	20	24	12.0000
((((	chr22:20073340-20073652(+)$1	1	148	152	12.0000
))))	chr14:54421086-54421341(-)$1	1	16	20	12.0000
))))	chr9:139942693-139942941(-)$1	1	117	121	12.0000
.)))	chr10:75578138-75578480(-)$1	1	52	56	12.0000
((((	chr17:46128250-46128543(+)$1	1	24	28	12.0000
..((	chr8:144678424-144678676(-)$1	1	57	61	12.0000
.)))	chr11:61583453-61583743(-)$1	1	49	53	12.0000
...)	chr16:29910357-29910691(-)$1	1	31	35	12.0000
((.(	chr3:195635536-195635820(-)$1	1	9	13	12.0000
(..(	chr16:447640-447883(+)$1	1	42	46	12.0000
(..(	chr2:95824670-95825016(-)$1	1	14	18	12.0000
((((	chr7:150066650-150066963(+)$1	1	22	26	12.0000
((((	chr8:126011311-126011561(+)$1	1	62	66	12.0000
...)	chr2:55646579-55646907(-)$1	1	59	63	12.0000
...(	chr22:42298876-42299110(+)$1	1	14	18	12.0000
)..(	chr17:28443794-28444129(+)$1	1	30	34	12.0000
))))	chr9:97848852-97849069(+)$1	1	25	29	12.0000
..))	chr17:38077849-38078136(-)$1	1	11	15	12.0000
))))	chr3:49058407-49058718(-)$1	1	87	91	12.0000
.)))	chr16:4744640-4744925(+)$1	1	49	53	12.0000
))))	chr17:57917964-57918187(+)$1	1	217	221	12.0000
(...	chr16:30014607-30014921(+)$1	1	13	17	12.0000
...(	chr11:111170454-111170773(+)$1	1	17	21	12.0000
..).	chr1:36787418-36787740(+)$1	1	123	127	12.0000
((((	chr6:128327053-128327395(-)$1	1	194	198	12.0000
(.((	chr12:109124824-109125115(-)$1	1	30	34	12.0000
....	chr14:105259204-105259495(-)$1	1	1	5	12.0000
(.((	chr21:34941988-34942267(+)$1	1	0	4	12.0000
((((	chr17:46127991-46128245(+)$1	1	6	10	12.0000
....	chr12:6797748-6798056(-)$1	1	9	13	12.0000
(...	chr11:27493945-27494208(-)$1	1	52	56	12.0000
))))	chr10:75578348-75578622(-)$1	1	100	104	12.0000
...(	chr16:29985280-29985588(+)$1	1	71	75	12.0000
((.(	chr2:191513917-191514189(+)$1	1	1	5	12.0000
...(	chr2:202001789-202002080(+)$1	1	0	4	12.0000
((..	chr20:42142928-42143284(+)$1	1	222	226	12.0000
((((	chr17:57918152-57918391(+)$1	1	29	33	12.0000
(.((	chr19:1104347-1104641(+)$1	1	138	142	12.0000
(.(.	chr19:56652951-56653258(+)$1	1	23	27	12.0000
....	chr19:18547995-18548280(-)$1	1	34	38	12.0000
(((.	chr19:46522367-46522729(+)$1	1	5	9	12.0000
(..(	chr19:41770831-41771102(+)$1	1	37	41	12.0000
..(.	chr20:62331312-62331612(-)$1	1	1	5	12.0000
)).)	chr12:125270543-125270859(-)$1	1	54	58	12.0000
....	chr3:49045382-49045635(+)$1	1	1	5	12.0000
((((	chr2:153574597-153574864(+)$1	1	65	69	12.0000
((.(	chr2:3461836-3462116(+)$1	1	27	31	12.0000
((((	chr10:105154020-105154252(-)$1	1	39	43	12.0000
((..	chr14:24036469-24036749(-)$1	1	70	74	12.0000
((((	chr17:57918318-57918540(+)$1	1	103	107	12.0000
((((	chr17:28444025-28444251(+)$1	1	53	57	12.0000
(...	chr14:103574564-103574856(+)$1	1	21	25	12.0000
...(	chr11:35286743-35287081(-)$1	1	205	209	12.0000
....	chr22:46508667-46508962(+)$1	1	84	88	12.0000
))..	chr16:2579858-2580126(+)$1	1	35	39	12.0000
...)	chr19:46522267-46522513(+)$1	1	48	52	12.0000
((..	chr8:144678715-144679006(-)$1	1	119	123	12.0000
((.(	chr8:8243809-8244096(-)$1	1	54	58	12.0000
((.(	chr22:42298833-42299076(+)$1	1	57	61	12.0000
..((	chr3:184080506-184080782(+)$1	1	0	4	12.0000
.(((	chr10:21785879-21786125(-)$1	1	83	87	12.0000
))).	chr17:74380172-74380436(+)$1	1	130	134	12.0000
))..	chr17:57918052-57918290(+)$1	1	129	133	12.0000
))))	chr3:42661364-42661641(+)$1	1	68	72	12.0000
((.(	chr9:35690814-35691080(-)$1	1	62	66	12.0000
))))	chr7:128828630-128828912(+)$1	1	19	23	12.0000
))..	chr17:57918123-57918349(+)$1	1	58	62	12.0000
....	chr22:41487773-41488046(+)$1	1	40	44	12.0000
(.((	chr2:97535510-97535793(-)$1	1	10	14	12.0000
.(.(	chr16:87738792-87739095(-)$1	1	65	69	12.0000
))))	chr12:391395-391697(-)$1	1	268	272	12.0000
((((	chr17:38278472-38278736(+)$1	1	37	41	12.0000
))))	chrX:153236893-153237214(-)$1	1	63	67	12.0000
((((	chr9:139743347-139743679(+)$1	1	13	17	12.0000
((.(	chr17:36925639-36925933(-)$1	1	43	47	12.0000
((.(	chr9:97848101-97848370(+)$1	1	59	63	12.0000
.(..	chr12:1909051-1909335(-)$1	1	12	16	12.0000
((.(	chr12:7037369-7037645(+)$1	1	81	85	12.0000
(...	chr2:95825077-95825373(-)$1	1	61	65	12.0000
((..	chr9:80646056-80646331(-)$1	1	41	45	12.0000
((.(	chr12:58217991-58218476(-)$1	1	75	79	12.0000
.(((	chr3:195635357-195635616(-)$1	1	22	26	12.0000
((((	chr3:49058149-49058382(-)$1	1	65	69	12.0000
((((	chr18:20799080-20799321(+)$1	1	102	106	12.0000
..((	chr9:139904664-139905000(-)$1	1	0	4	12.0000
.)))	chr12:391330-391595(-)$1	1	166	170	12.0000
(((.	chr16:2579518-2579772(+)$1	1	108	112	12.0000
((((	chr15:34678935-34679214(-)$1	1	6	10	12.0000
((((	chr9:35690529-35690784(-)$1	1	7	11	12.0000

#PSSM
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
A : 0.89	a : 0.10	
G : 0.89	g : 0.10	

#score	1104.0000000000005
#seq	92
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_transcript_m2_run1.nuc.txt

#NT
uuuguuuc	chr20:36757543-36757808(-)$1	265	163	171	15.3333
uuuuuuuu	chr17:7215393-7215605(+)$1	212	35	43	16.1111
UUUUUUUC	chr1:109180612-109180961(+)$1	349	66	74	19.7777
UUUUUUAC	chr12:56665894-56666135(-)$1	241	75	83	15.3333
UUUUUUUC	chr2:232577543-232577800(+)$1	257	245	253	19.7777
UUAUUUUC	chr14:77805582-77805827(-)$1	245	50	58	15.7777
AUUUUUUC	chr8:141538259-141538531(-)$1	272	106	114	15.3333
UUUUUUUC	chr1:110886128-110886381(+)$1	253	16	24	19.7777
UUUUUUUA	chr12:50157342-50157554(+)$1	212	119	127	16.0000
uuuuauuc	chr21:11086413-11086679(-)$1	266	81	89	15.6666
UUUUUUUC	chr10:71910170-71910420(-)$1	250	98	106	19.7777
UUUUUUUA	chr14:70238187-70238470(+)$1	283	17	25	16.0000
UUUUUUAC	chr1:205686633-205686878(-)$1	245	95	103	15.3333
UUUUUUUC	chr6:24719973-24720215(-)$1	242	9	17	19.7777
UUAUUUUC	chr10:102122598-102122840(+)$1	242	42	50	15.7777
UUUUUUUA	chr5:154194506-154194718(+)$1	212	50	58	16.0000
UUUUAUUC	chr7:143548928-143549183(-)$1	255	162	170	15.6666
UUUUUAUC	chr5:150070658-150070971(-)$1	313	66	74	15.0000
UAUUUUUC	chr5:154194179-154194408(+)$1	229	203	211	16.1111
UUUAUUUC	chr1:115315191-115315450(-)$1	259	74	82	15.3333
UUUCUUUC	chrX:152616791-152617088(+)$1	297	87	95	15.4444
UUUUUUUU	chr15:89739761-89740059(+)$1	298	82	90	16.1111
UUCUUUUC	chr12:54763189-54763476(-)$1	287	117	125	15.6666
UCUUUUUC	chr21:46270713-46270963(-)$1	250	198	206	15.7777
UUUUCUUC	chr1:36388057-36388339(+)$1	282	107	115	15.5555
UAUUUUUC	chr11:44641371-44641644(+)$1	273	64	72	16.1111
UUUCUUUC	chr1:167395246-167395503(+)$1	257	110	118	15.4444
UUGUUUUC	chr9:137023533-137023773(+)$1	240	125	133	15.5555
UAUUUUUC	chr5:82350673-82350919(-)$1	246	89	97	16.1111
UUUUGUUC	chr4:41957380-41957631(+)$1	251	198	206	15.7777
uauuuuuC	chrX:11155894-11156159(-)$1	265	17	25	16.1111
uuuuuuug	chr19:825089-825396(+)$1	307	241	249	15.7777
UUUUGUUC	chr2:65312249-65312555(+)$1	306	267	275	15.7777
UUUUUUUU	chr17:40352213-40352460(-)$1	247	216	224	16.1111
CUUUUUUC	chr14:67852362-67852601(+)$1	239	5	13	15.2222
UUUUUUGC	chr1:9674607-9674889(+)$1	282	85	93	15.2222
UUCUUUUC	chr8:103839413-103839673(-)$1	260	86	94	15.6666
UUUUGUUC	chr12:74934591-74934816(+)$1	225	45	53	15.7777
AUUUUUUC	chr9:115385924-115386220(+)$1	296	246	254	15.3333
uuuuuuuu	chr9:127911593-127911867(-)$1	274	35	43	16.1111
UAUUUUUC	chr5:132215582-132215863(-)$1	281	96	104	16.1111
UUUUUUUC	chr19:5205784-5206052(-)$1	268	52	60	19.7777
UUUUUUUC	chr10:103316107-103316344(+)$1	237	39	47	19.7777
UUAUUUUC	chr17:63007428-63007714(-)$1	286	270	278	15.7777

#otherMatches

#Struct PSSM
ff::::::	chr19:14203132-14203376(-)$1	244	230	238	15.7777
wwwwwwww	chr20:36757543-36757808(-)$1	265	163	171	15.3333
^^^^^^^^	chr17:7215393-7215605(+)$1	212	35	43	16.1111
c]bb]ddd	chr1:109180612-109180961(+)$1	349	66	74	19.7777
dnnnnndd	chr12:56665894-56666135(-)$1	241	75	83	15.3333
IIIIIII:	chr2:232577543-232577800(+)$1	257	245	253	19.7777
::::::::	chr14:77805582-77805827(-)$1	245	50	58	15.7777
9999ffff	chr8:141538259-141538531(-)$1	272	106	114	15.3333
^^^^^^^^	chr1:110886128-110886381(+)$1	253	16	24	19.7777
===$$$$$	chr12:50157342-50157554(+)$1	212	119	127	16.0000
:::::ddd	chr21:11086413-11086679(-)$1	266	81	89	15.6666
EEEEKKFF	chr10:71910170-71910420(-)$1	250	98	106	19.7777
=======%	chr14:70238187-70238470(+)$1	283	17	25	16.0000
ff[hhhhh	chr1:205686633-205686878(-)$1	245	95	103	15.3333
::::::CC	chr6:24719973-24720215(-)$1	242	9	17	19.7777
vvvvvvvv	chr10:102122598-102122840(+)$1	242	42	50	15.7777
888888hh	chr5:154194506-154194718(+)$1	212	50	58	16.0000
====[ccc	chr7:143548928-143549183(-)$1	255	162	170	15.6666
::::::::	chr5:150070658-150070971(-)$1	313	66	74	15.0000
hhhhhhhh	chr5:154194179-154194408(+)$1	229	203	211	16.1111
ggggggg[	chr1:115315191-115315450(-)$1	259	74	82	15.3333
GGGGGGG:	chrX:152616791-152617088(+)$1	297	87	95	15.4444
iiiiiii]	chr15:89739761-89740059(+)$1	298	82	90	16.1111
::::::::	chr12:54763189-54763476(-)$1	287	117	125	15.6666
g::::ddd	chr21:46270713-46270963(-)$1	250	198	206	15.7777
:dddd[bb	chr1:36388057-36388339(+)$1	282	107	115	15.5555
zzzzzzzz	chr11:44641371-44641644(+)$1	273	64	72	16.1111
JJJJJJJJ	chr1:167395246-167395503(+)$1	257	110	118	15.4444
::::::::	chr9:137023533-137023773(+)$1	240	125	133	15.5555
33ffffff	chr5:82350673-82350919(-)$1	246	89	97	16.1111
~~~~CCC:	chr4:41957380-41957631(+)$1	251	198	206	15.7777
ffffff^^	chrX:11155894-11156159(-)$1	265	17	25	16.1111
b22a22cc	chr19:825089-825396(+)$1	307	241	249	15.7777
eeeee]dd	chr2:65312249-65312555(+)$1	306	267	275	15.7777
gggggnnn	chr17:40352213-40352460(-)$1	247	216	224	16.1111
::::::::	chr14:67852362-67852601(+)$1	239	5	13	15.2222
ccc"""bb	chr1:9674607-9674889(+)$1	282	85	93	15.2222
vvvvvvvv	chr8:103839413-103839673(-)$1	260	86	94	15.6666
gppppppp	chr12:74934591-74934816(+)$1	225	45	53	15.7777
cnnnnncc	chr9:115385924-115386220(+)$1	296	246	254	15.3333
::::::::	chr9:127911593-127911867(-)$1	274	35	43	16.1111
oooooccc	chr5:132215582-132215863(-)$1	281	96	104	16.1111
::::::::	chr19:5205784-5206052(-)$1	268	52	60	19.7777
::::::cc	chr10:103316107-103316344(+)$1	237	39	47	19.7777
YCCCGGGG	chr17:63007428-63007714(-)$1	286	270	278	15.7777

#DB
))......	chr19:14203132-14203376(-)$1	1	230	238	15.7777
........	chr20:36757543-36757808(-)$1	1	163	171	15.3333
........	chr17:7215393-7215605(+)$1	1	35	43	16.1111
).)).)))	chr1:109180612-109180961(+)$1	1	66	74	19.7777
(.....))	chr12:56665894-56666135(-)$1	1	75	83	15.3333
))))))).	chr2:232577543-232577800(+)$1	1	245	253	19.7777
........	chr14:77805582-77805827(-)$1	1	50	58	15.7777
....))))	chr8:141538259-141538531(-)$1	1	106	114	15.3333
........	chr1:110886128-110886381(+)$1	1	16	24	19.7777
(((.....	chr12:50157342-50157554(+)$1	1	119	127	16.0000
.....(((	chr21:11086413-11086679(-)$1	1	81	89	15.6666
((((..((	chr10:71910170-71910420(-)$1	1	98	106	19.7777
(((((((.	chr14:70238187-70238470(+)$1	1	17	25	16.0000
((.(((((	chr1:205686633-205686878(-)$1	1	95	103	15.3333
......((	chr6:24719973-24720215(-)$1	1	9	17	19.7777
........	chr10:102122598-102122840(+)$1	1	42	50	15.7777
......))	chr5:154194506-154194718(+)$1	1	50	58	16.0000
((((.(((	chr7:143548928-143549183(-)$1	1	162	170	15.6666
........	chr5:150070658-150070971(-)$1	1	66	74	15.0000
))))))))	chr5:154194179-154194408(+)$1	1	203	211	16.1111
(((((((.	chr1:115315191-115315450(-)$1	1	74	82	15.3333
(((((((.	chrX:152616791-152617088(+)$1	1	87	95	15.4444
))))))).	chr15:89739761-89740059(+)$1	1	82	90	16.1111
........	chr12:54763189-54763476(-)$1	1	117	125	15.6666
)....(((	chr21:46270713-46270963(-)$1	1	198	206	15.7777
.((((.((	chr1:36388057-36388339(+)$1	1	107	115	15.5555
........	chr11:44641371-44641644(+)$1	1	64	72	16.1111
))))))))	chr1:167395246-167395503(+)$1	1	110	118	15.4444
........	chr9:137023533-137023773(+)$1	1	125	133	15.5555
..))))))	chr5:82350673-82350919(-)$1	1	89	97	16.1111
....))).	chr4:41957380-41957631(+)$1	1	198	206	15.7777
((((((..	chrX:11155894-11156159(-)$1	1	17	25	16.1111
)..)..))	chr19:825089-825396(+)$1	1	241	249	15.7777
))))).))	chr2:65312249-65312555(+)$1	1	267	275	15.7777
(((((...	chr17:40352213-40352460(-)$1	1	216	224	16.1111
........	chr14:67852362-67852601(+)$1	1	5	13	15.2222
(((...((	chr1:9674607-9674889(+)$1	1	85	93	15.2222
........	chr8:103839413-103839673(-)$1	1	86	94	15.6666
(.......	chr12:74934591-74934816(+)$1	1	45	53	15.7777
(.....))	chr9:115385924-115386220(+)$1	1	246	254	15.3333
........	chr9:127911593-127911867(-)$1	1	35	43	16.1111
.....)))	chr5:132215582-132215863(-)$1	1	96	104	16.1111
........	chr19:5205784-5206052(-)$1	1	52	60	19.7777
......((	chr10:103316107-103316344(+)$1	1	39	47	19.7777
.)))))))	chr17:63007428-63007714(-)$1	1	270	278	15.7777

#PSSM
U : 0.80	u : 0.13	A : 0.04	C : 0.02	
U : 0.73	u : 0.11	A : 0.08	C : 0.04	a : 0.02	
U : 0.73	u : 0.13	A : 0.06	C : 0.04	G : 0.02	
U : 0.80	u : 0.11	C : 0.04	g : 0.02	A : 0.02	
U : 0.75	u : 0.11	G : 0.06	a : 0.02	A : 0.02	C : 0.02	
U : 0.84	u : 0.13	A : 0.02	
U : 0.80	u : 0.13	A : 0.04	G : 0.02	
C : 0.77	A : 0.06	c : 0.04	u : 0.04	U : 0.04	g : 0.02	

#score	735.5555555555559
#seq	45
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_transcript_m3_run2.nuc.txt

#NT
cug	chr6:84651936-84652209(+)$1	273	34	37	8.9999
CUG	chrX:151123748-151124031(-)$1	283	1	4	8.9999
CUG	chr1:245025820-245026040(-)$1	220	175	178	8.9999
CUG	chr19:48981605-48981867(+)$1	262	10	13	8.9999
CUG	chr7:91690509-91690775(+)$1	266	203	206	8.9999
CUG	chr16:2263907-2264182(-)$1	275	55	58	8.9999
CUG	chr11:129997624-129997835(+)$1	211	5	8	8.9999
CUG	chr1:155734946-155735203(-)$1	257	12	15	8.9999
CUG	chr1:156542185-156542423(-)$1	238	30	33	8.9999
CUG	chr14:73570009-73570286(+)$1	277	197	200	8.9999
CUG	chr1:16775485-16775788(+)$1	303	8	11	8.9999
CUG	chr1:8877297-8877561(-)$1	264	97	100	8.9999
cug	chr11:31753038-31753365(+)$1	327	114	117	8.9999
CUG	chr7:72922693-72922897(-)$1	204	47	50	8.9999
CUG	chr1:39908083-39908322(+)$1	239	18	21	8.9999
CUG	chr14:102476640-102476896(+)$1	256	39	42	8.9999
CUG	chr19:32902044-32902271(+)$1	227	30	33	8.9999
CUG	chrX:13330783-13331045(+)$1	262	28	31	8.9999
CUG	chrX:73070781-73071058(-)$1	277	71	74	8.9999
CUG	chr16:89349902-89350171(-)$1	269	13	16	8.9999
CUG	chr20:62576969-62577172(-)$1	203	11	14	8.9999
CUG	chr10:50369036-50369316(-)$1	280	64	67	8.9999
CUG	chr6:31694847-31695063(-)$1	216	16	19	8.9999
CUG	chr21:46925455-46925698(+)$1	243	97	100	8.9999
CUG	chr19:18547926-18548205(-)$1	279	0	3	8.9999
CUG	chr6:30584565-30584815(-)$1	250	1	4	8.9999
CUG	chr14:21851920-21852129(-)$1	209	47	50	8.9999
CUG	chr2:232321241-232321443(-)$1	202	22	25	8.9999
CUG	chr5:126145826-126146094(+)$1	268	97	100	8.9999
CUG	chr6:79711516-79711760(-)$1	244	85	88	8.9999
CUG	chr5:108704176-108704438(-)$1	262	17	20	8.9999
CUG	chr22:21064895-21065169(-)$1	274	66	69	8.9999
CUG	chr16:18861300-18861546(-)$1	246	55	58	8.9999
CUG	chr14:102549786-102549991(-)$1	205	6	9	8.9999
CUG	chrX:153674084-153674331(+)$1	247	30	33	8.9999
CUG	chrX:53436256-53436511(-)$1	255	51	54	8.9999
CUG	chr10:129905964-129906275(-)$1	311	129	132	8.9999
CUG	chr3:128616390-128616655(+)$1	265	72	75	8.9999
CUG	chr11:27384290-27384586(-)$1	296	7	10	8.9999
CUG	chr12:123464003-123464288(+)$1	285	9	12	8.9999
CUG	chr10:60147851-60148116(+)$1	265	26	29	8.9999
CUG	chr11:47772600-47772870(-)$1	270	59	62	8.9999
CUG	chr11:57099611-57099847(-)$1	236	3	6	8.9999
CUG	chr15:75654921-75655170(-)$1	249	13	16	8.9999
CUG	chr20:62305201-62305469(+)$1	268	0	3	8.9999
CUG	chr17:37680928-37681186(+)$1	258	7	10	8.9999
CUG	chr3:184044650-184044871(+)$1	221	6	9	8.9999
CUG	chr21:34927146-34927441(+)$1	295	44	47	8.9999
CUG	chrX:70597419-70597658(+)$1	239	2	5	8.9999
cug	chrX:138039409-138039704(-)$1	295	38	41	8.9999
CUG	chr1:171510916-171511159(+)$1	243	28	31	8.9999
CUG	chr1:110593548-110593781(+)$1	233	2	5	8.9999
CUG	chr6:136582311-136582526(-)$1	215	147	150	8.9999
CUG	chr1:155896834-155897046(-)$1	212	28	31	8.9999
CUG	chr7:36458820-36459173(+)$1	353	202	205	8.9999
CUG	chr2:128262159-128262381(-)$1	222	83	86	8.9999
CUG	chr14:102548639-102548861(-)$1	222	115	118	8.9999
CUG	chr6:42974600-42974829(+)$1	229	26	29	8.9999
CUG	chr19:10265574-10265817(-)$1	243	21	24	8.9999
CUG	chr17:76794897-76795151(-)$1	254	3	6	8.9999
CUG	chr11:108590423-108590654(+)$1	231	122	125	8.9999
CUG	chrX:106359088-106359353(-)$1	265	0	3	8.9999
CUG	chr1:26581926-26582200(+)$1	274	15	18	8.9999
CUG	chr1:25815625-25815866(+)$1	241	221	224	8.9999
CUG	chr7:2634411-2634716(+)$1	305	0	3	8.9999
cug	chr22:38352679-38352950(+)$1	271	38	41	8.9999
CUG	chr12:12980119-12980417(+)$1	298	38	41	8.9999
CUG	chr11:62458000-62458264(-)$1	264	36	39	8.9999
CUG	chr4:89658555-89658807(-)$1	252	18	21	8.9999
CUG	chr7:104783426-104783676(-)$1	250	8	11	8.9999
CUG	chr20:30381570-30381796(+)$1	226	10	13	8.9999
CUG	chr1:163325054-163325300(+)$1	246	50	53	8.9999
CUG	chr19:2762401-2762677(-)$1	276	36	39	8.9999
CUG	chrX:122755062-122755323(-)$1	261	70	73	8.9999
CUG	chr19:15537520-15537807(-)$1	287	5	8	8.9999
CUG	chr6:119327556-119327875(-)$1	319	151	154	8.9999
CUG	chr2:159490618-159490869(+)$1	251	34	37	8.9999
CUG	chr20:34505368-34505651(+)$1	283	13	16	8.9999
CUG	chr1:52301772-52301984(-)$1	212	101	104	8.9999
cug	chr11:35827829-35828041(+)$1	212	24	27	8.9999
CUG	chr12:122801212-122801486(-)$1	274	36	39	8.9999
CUG	chr16:18847152-18847443(-)$1	291	10	13	8.9999
CUG	chr15:91527917-91528152(-)$1	235	3	6	8.9999
CUG	chr19:55752831-55753088(-)$1	257	23	26	8.9999
CUG	chr11:67810563-67810812(+)$1	249	7	10	8.9999
CUG	chr19:5705746-5706045(-)$1	299	17	20	8.9999
CUG	chr5:65473260-65473589(+)$1	329	58	61	8.9999
CUG	chr1:155734780-155735056(-)$1	276	51	54	8.9999
CUG	chr22:19467538-19467777(+)$1	239	125	128	8.9999
CUG	chr19:45562490-45562718(+)$1	228	11	14	8.9999
CUG	chr2:202622023-202622305(-)$1	282	4	7	8.9999
CUG	chr2:97851087-97851349(+)$1	262	29	32	8.9999
CUG	chr17:40134172-40134391(-)$1	219	1	4	8.9999
cug	chr16:1367286-1367520(+)$1	234	39	42	8.9999
CUG	chr22:30734802-30735126(-)$1	324	38	41	8.9999
CUG	chr3:46966842-46967126(-)$1	284	64	67	8.9999

#otherMatches

#Struct PSSM
eee	chr12:53836392-53836617(+)$1	225	14	17	8.9999
GGG	chr6:84651936-84652209(+)$1	273	34	37	8.9999
:::	chrX:151123748-151124031(-)$1	283	1	4	8.9999
ccc	chr1:245025820-245026040(-)$1	220	175	178	8.9999
CCO	chr19:48981605-48981867(+)$1	262	10	13	8.9999
cc]	chr7:91690509-91690775(+)$1	266	203	206	8.9999
III	chr16:2263907-2264182(-)$1	275	55	58	8.9999
:dd	chr11:129997624-129997835(+)$1	211	5	8	8.9999
HHH	chr1:155734946-155735203(-)$1	257	12	15	8.9999
hhh	chr1:156542185-156542423(-)$1	238	30	33	8.9999
BB}	chr14:73570009-73570286(+)$1	277	197	200	8.9999
eee	chr1:16775485-16775788(+)$1	303	8	11	8.9999
===	chr1:8877297-8877561(-)$1	264	97	100	8.9999
cc[	chr11:31753038-31753365(+)$1	327	114	117	8.9999
HHH	chr7:72922693-72922897(-)$1	204	47	50	8.9999
CCC	chr1:39908083-39908322(+)$1	239	18	21	8.9999
cqq	chr14:102476640-102476896(+)$1	256	39	42	8.9999
ddd	chr19:32902044-32902271(+)$1	227	30	33	8.9999
hhh	chrX:13330783-13331045(+)$1	262	28	31	8.9999
:::	chrX:73070781-73071058(-)$1	277	71	74	8.9999
HHH	chr16:89349902-89350171(-)$1	269	13	16	8.9999
KFF	chr20:62576969-62577172(-)$1	203	11	14	8.9999
22d	chr10:50369036-50369316(-)$1	280	64	67	8.9999
EEE	chr6:31694847-31695063(-)$1	216	16	19	8.9999
rrr	chr21:46925455-46925698(+)$1	243	97	100	8.9999
:::	chr19:18547926-18548205(-)$1	279	0	3	8.9999
ccc	chr6:30584565-30584815(-)$1	250	1	4	8.9999
fff	chr14:21851920-21852129(-)$1	209	47	50	8.9999
eer	chr2:232321241-232321443(-)$1	202	22	25	8.9999
{II	chr5:126145826-126146094(+)$1	268	97	100	8.9999
55c	chr6:79711516-79711760(-)$1	244	85	88	8.9999
ff!	chr5:108704176-108704438(-)$1	262	17	20	8.9999
BB{	chr22:21064895-21065169(-)$1	274	66	69	8.9999
ggg	chr16:18861300-18861546(-)$1	246	55	58	8.9999
LCC	chr14:102549786-102549991(-)$1	205	6	9	8.9999
!ee	chrX:153674084-153674331(+)$1	247	30	33	8.9999
qqq	chrX:53436256-53436511(-)$1	255	51	54	8.9999
fff	chr10:129905964-129906275(-)$1	311	129	132	8.9999
ddd	chr3:128616390-128616655(+)$1	265	72	75	8.9999
eee	chr11:27384290-27384586(-)$1	296	7	10	8.9999
hhh	chr12:123464003-123464288(+)$1	285	9	12	8.9999
a[d	chr10:60147851-60148116(+)$1	265	26	29	8.9999
dd[	chr11:47772600-47772870(-)$1	270	59	62	8.9999
DDD	chr11:57099611-57099847(-)$1	236	3	6	8.9999
eee	chr15:75654921-75655170(-)$1	249	13	16	8.9999
::d	chr20:62305201-62305469(+)$1	268	0	3	8.9999
:ee	chr17:37680928-37681186(+)$1	258	7	10	8.9999
::C	chr3:184044650-184044871(+)$1	221	6	9	8.9999
ggg	chr21:34927146-34927441(+)$1	295	44	47	8.9999
III	chrX:70597419-70597658(+)$1	239	2	5	8.9999
bcc	chrX:138039409-138039704(-)$1	295	38	41	8.9999
eee	chr1:171510916-171511159(+)$1	243	28	31	8.9999
HHH	chr1:110593548-110593781(+)$1	233	2	5	8.9999
ddd	chr6:136582311-136582526(-)$1	215	147	150	8.9999
bmm	chr1:155896834-155897046(-)$1	212	28	31	8.9999
2cc	chr7:36458820-36459173(+)$1	353	202	205	8.9999
fff	chr2:128262159-128262381(-)$1	222	83	86	8.9999
[cc	chr14:102548639-102548861(-)$1	222	115	118	8.9999
ddd	chr6:42974600-42974829(+)$1	229	26	29	8.9999
:::	chr19:10265574-10265817(-)$1	243	21	24	8.9999
:::	chr17:76794897-76795151(-)$1	254	3	6	8.9999
nnf	chr11:108590423-108590654(+)$1	231	122	125	8.9999
:::	chrX:106359088-106359353(-)$1	265	0	3	8.9999
[dd	chr1:26581926-26582200(+)$1	274	15	18	8.9999
FFF	chr1:25815625-25815866(+)$1	241	221	224	8.9999
EEE	chr7:2634411-2634716(+)$1	305	0	3	8.9999
:EE	chr22:38352679-38352950(+)$1	271	38	41	8.9999
DD{	chr12:12980119-12980417(+)$1	298	38	41	8.9999
ccc	chr11:62458000-62458264(-)$1	264	36	39	8.9999
ccB	chr4:89658555-89658807(-)$1	252	18	21	8.9999
b::	chr7:104783426-104783676(-)$1	250	8	11	8.9999
GGG	chr20:30381570-30381796(+)$1	226	10	13	8.9999
ggD	chr1:163325054-163325300(+)$1	246	50	53	8.9999
DDD	chr19:2762401-2762677(-)$1	276	36	39	8.9999
dd2	chrX:122755062-122755323(-)$1	261	70	73	8.9999
eee	chr19:15537520-15537807(-)$1	287	5	8	8.9999
dd$	chr6:119327556-119327875(-)$1	319	151	154	8.9999
FFL	chr2:159490618-159490869(+)$1	251	34	37	8.9999
eee	chr20:34505368-34505651(+)$1	283	13	16	8.9999
bb[	chr1:52301772-52301984(-)$1	212	101	104	8.9999
!!b	chr11:35827829-35828041(+)$1	212	24	27	8.9999
odd	chr12:122801212-122801486(-)$1	274	36	39	8.9999
d[e	chr16:18847152-18847443(-)$1	291	10	13	8.9999
EEe	chr15:91527917-91528152(-)$1	235	3	6	8.9999
ooo	chr19:55752831-55753088(-)$1	257	23	26	8.9999
cc:	chr11:67810563-67810812(+)$1	249	7	10	8.9999
CCG	chr19:5705746-5706045(-)$1	299	17	20	8.9999
3ee	chr5:65473260-65473589(+)$1	329	58	61	8.9999
C::	chr1:155734780-155735056(-)$1	276	51	54	8.9999
f]d	chr22:19467538-19467777(+)$1	239	125	128	8.9999
ggg	chr19:45562490-45562718(+)$1	228	11	14	8.9999
EEE	chr2:202622023-202622305(-)$1	282	4	7	8.9999
ccc	chr2:97851087-97851349(+)$1	262	29	32	8.9999
FFF	chr17:40134172-40134391(-)$1	219	1	4	8.9999
ccc	chr16:1367286-1367520(+)$1	234	39	42	8.9999
GGG	chr22:30734802-30735126(-)$1	324	38	41	8.9999
ndd	chr3:46966842-46967126(-)$1	284	64	67	8.9999

#DB
(((	chr12:53836392-53836617(+)$1	1	14	17	8.9999
(((	chr6:84651936-84652209(+)$1	1	34	37	8.9999
...	chrX:151123748-151124031(-)$1	1	1	4	8.9999
)))	chr1:245025820-245026040(-)$1	1	175	178	8.9999
((.	chr19:48981605-48981867(+)$1	1	10	13	8.9999
)).	chr7:91690509-91690775(+)$1	1	203	206	8.9999
(((	chr16:2263907-2264182(-)$1	1	55	58	8.9999
.((	chr11:129997624-129997835(+)$1	1	5	8	8.9999
(((	chr1:155734946-155735203(-)$1	1	12	15	8.9999
)))	chr1:156542185-156542423(-)$1	1	30	33	8.9999
)).	chr14:73570009-73570286(+)$1	1	197	200	8.9999
(((	chr1:16775485-16775788(+)$1	1	8	11	8.9999
(((	chr1:8877297-8877561(-)$1	1	97	100	8.9999
((.	chr11:31753038-31753365(+)$1	1	114	117	8.9999
(((	chr7:72922693-72922897(-)$1	1	47	50	8.9999
(((	chr1:39908083-39908322(+)$1	1	18	21	8.9999
(..	chr14:102476640-102476896(+)$1	1	39	42	8.9999
(((	chr19:32902044-32902271(+)$1	1	30	33	8.9999
(((	chrX:13330783-13331045(+)$1	1	28	31	8.9999
...	chrX:73070781-73071058(-)$1	1	71	74	8.9999
(((	chr16:89349902-89350171(-)$1	1	13	16	8.9999
.((	chr20:62576969-62577172(-)$1	1	11	14	8.9999
..)	chr10:50369036-50369316(-)$1	1	64	67	8.9999
(((	chr6:31694847-31695063(-)$1	1	16	19	8.9999
...	chr21:46925455-46925698(+)$1	1	97	100	8.9999
...	chr19:18547926-18548205(-)$1	1	0	3	8.9999
(((	chr6:30584565-30584815(-)$1	1	1	4	8.9999
(((	chr14:21851920-21852129(-)$1	1	47	50	8.9999
((.	chr2:232321241-232321443(-)$1	1	22	25	8.9999
.((	chr5:126145826-126146094(+)$1	1	97	100	8.9999
..)	chr6:79711516-79711760(-)$1	1	85	88	8.9999
((.	chr5:108704176-108704438(-)$1	1	17	20	8.9999
((.	chr22:21064895-21065169(-)$1	1	66	69	8.9999
)))	chr16:18861300-18861546(-)$1	1	55	58	8.9999
.((	chr14:102549786-102549991(-)$1	1	6	9	8.9999
.((	chrX:153674084-153674331(+)$1	1	30	33	8.9999
...	chrX:53436256-53436511(-)$1	1	51	54	8.9999
)))	chr10:129905964-129906275(-)$1	1	129	132	8.9999
(((	chr3:128616390-128616655(+)$1	1	72	75	8.9999
(((	chr11:27384290-27384586(-)$1	1	7	10	8.9999
(((	chr12:123464003-123464288(+)$1	1	9	12	8.9999
(.(	chr10:60147851-60148116(+)$1	1	26	29	8.9999
((.	chr11:47772600-47772870(-)$1	1	59	62	8.9999
(((	chr11:57099611-57099847(-)$1	1	3	6	8.9999
(((	chr15:75654921-75655170(-)$1	1	13	16	8.9999
..(	chr20:62305201-62305469(+)$1	1	0	3	8.9999
.((	chr17:37680928-37681186(+)$1	1	7	10	8.9999
..(	chr3:184044650-184044871(+)$1	1	6	9	8.9999
(((	chr21:34927146-34927441(+)$1	1	44	47	8.9999
(((	chrX:70597419-70597658(+)$1	1	2	5	8.9999
)))	chrX:138039409-138039704(-)$1	1	38	41	8.9999
)))	chr1:171510916-171511159(+)$1	1	28	31	8.9999
(((	chr1:110593548-110593781(+)$1	1	2	5	8.9999
)))	chr6:136582311-136582526(-)$1	1	147	150	8.9999
(..	chr1:155896834-155897046(-)$1	1	28	31	8.9999
.))	chr7:36458820-36459173(+)$1	1	202	205	8.9999
)))	chr2:128262159-128262381(-)$1	1	83	86	8.9999
.((	chr14:102548639-102548861(-)$1	1	115	118	8.9999
(((	chr6:42974600-42974829(+)$1	1	26	29	8.9999
...	chr19:10265574-10265817(-)$1	1	21	24	8.9999
...	chr17:76794897-76795151(-)$1	1	3	6	8.9999
..)	chr11:108590423-108590654(+)$1	1	122	125	8.9999
...	chrX:106359088-106359353(-)$1	1	0	3	8.9999
.((	chr1:26581926-26582200(+)$1	1	15	18	8.9999
)))	chr1:25815625-25815866(+)$1	1	221	224	8.9999
(((	chr7:2634411-2634716(+)$1	1	0	3	8.9999
.((	chr22:38352679-38352950(+)$1	1	38	41	8.9999
((.	chr12:12980119-12980417(+)$1	1	38	41	8.9999
(((	chr11:62458000-62458264(-)$1	1	36	39	8.9999
))(	chr4:89658555-89658807(-)$1	1	18	21	8.9999
)..	chr7:104783426-104783676(-)$1	1	8	11	8.9999
(((	chr20:30381570-30381796(+)$1	1	10	13	8.9999
))(	chr1:163325054-163325300(+)$1	1	50	53	8.9999
(((	chr19:2762401-2762677(-)$1	1	36	39	8.9999
)).	chrX:122755062-122755323(-)$1	1	70	73	8.9999
(((	chr19:15537520-15537807(-)$1	1	5	8	8.9999
((.	chr6:119327556-119327875(-)$1	1	151	154	8.9999
((.	chr2:159490618-159490869(+)$1	1	34	37	8.9999
)))	chr20:34505368-34505651(+)$1	1	13	16	8.9999
((.	chr1:52301772-52301984(-)$1	1	101	104	8.9999
..(	chr11:35827829-35828041(+)$1	1	24	27	8.9999
.))	chr12:122801212-122801486(-)$1	1	36	39	8.9999
(.(	chr16:18847152-18847443(-)$1	1	10	13	8.9999
(((	chr15:91527917-91528152(-)$1	1	3	6	8.9999
...	chr19:55752831-55753088(-)$1	1	23	26	8.9999
)).	chr11:67810563-67810812(+)$1	1	7	10	8.9999
(((	chr19:5705746-5706045(-)$1	1	17	20	8.9999
.))	chr5:65473260-65473589(+)$1	1	58	61	8.9999
(..	chr1:155734780-155735056(-)$1	1	51	54	8.9999
).)	chr22:19467538-19467777(+)$1	1	125	128	8.9999
(((	chr19:45562490-45562718(+)$1	1	11	14	8.9999
(((	chr2:202622023-202622305(-)$1	1	4	7	8.9999
(((	chr2:97851087-97851349(+)$1	1	29	32	8.9999
(((	chr17:40134172-40134391(-)$1	1	1	4	8.9999
)))	chr16:1367286-1367520(+)$1	1	39	42	8.9999
(((	chr22:30734802-30735126(-)$1	1	38	41	8.9999
.))	chr3:46966842-46967126(-)$1	1	64	67	8.9999

#PSSM
C : 0.93	c : 0.06	
U : 0.93	u : 0.06	
G : 0.93	g : 0.06	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_CDS_m3_run2.nuc.txt

#NT
UGCUGAAG	chr7:103276709-103276944(-)$1	235	152	160	13.2000
UGAUGAGG	chr20:31022794-31023039(+)$1	245	117	125	17.2000
AGGUGAGG	chr17:80193762-80194054(+)$1	292	94	102	12.6000
UGGUGGGG	chr1:19474425-19474680(-)$1	255	20	28	12.5000
UGAUGAGU	chr14:102549353-102549619(-)$1	266	68	76	12.9000
UGGUGACG	chr12:49666601-49666860(+)$1	259	18	26	12.9000
UGGAGAGG	chrX:53589712-53589973(-)$1	261	93	101	13.3000
UGAUGAGG	chr14:101200385-101200611(+)$1	226	133	141	17.2000
UGAAGAGG	chr1:19474956-19475210(-)$1	254	188	196	13.7000
UGAUGAGC	chr19:57325237-57325471(-)$1	234	11	19	12.9000
UAAUGAGG	chr14:102550932-102551190(-)$1	258	106	114	12.5000
UGGUGAGG	chr7:127341134-127341411(+)$1	277	241	249	16.8000
UGCUGAGG	chr12:112756954-112757265(-)$1	311	45	53	16.6000
UGAUGAGG	chr14:21546492-21546748(+)$1	256	124	132	17.2000
UGCUGAGC	chr9:116930028-116930252(+)$1	224	108	116	12.3000
GGAUGAGG	chr2:11755225-11755468(+)$1	243	168	176	12.8000
UGAUGAGG	chr17:1585083-1585368(-)$1	285	111	119	17.2000
UGCUGAGG	chr11:130011740-130012027(+)$1	287	182	190	16.6000
CGAUGAGG	chr20:60905444-60905667(-)$1	223	163	171	12.8000
UGAUGAGA	chr17:79803647-79803853(-)$1	206	75	83	12.8000
UGGUAAGG	chr7:148717958-148718168(-)$1	210	108	116	12.4000
UGCAGAGG	chr2:102445918-102446157(+)$1	239	121	129	13.1000
UGAUGAAG	chr19:51857296-51857633(-)$1	337	231	239	13.8000
UGAUAAGG	chr9:116994001-116994239(+)$1	238	138	146	12.8000
UGCUGAGG	chr6:52143441-52143712(-)$1	271	124	132	16.6000
UGGUGUGG	chr3:58084337-58084594(+)$1	257	104	112	12.5000
UGCUGACG	chr16:28846373-28846609(+)$1	236	42	50	12.7000
UGCUGGGG	chr7:103629635-103629887(-)$1	252	130	138	12.3000
UGAGGAGG	chr3:167750212-167750481(-)$1	269	68	76	13.4000
UGAUGAAG	chr1:19490652-19490888(-)$1	236	148	156	13.8000
AGGUGAGG	chr22:36690062-36690303(-)$1	241	164	172	12.6000
UGAAGAGG	chr7:2403166-2403450(+)$1	284	120	128	13.7000
UGAUGAAG	chr7:148711901-148712129(-)$1	228	80	88	13.8000
UUCUGAGG	chr16:2814528-2814767(+)$1	239	44	52	11.9000
UGGUGAGU	chr21:46929283-46929528(+)$1	245	230	238	12.5000
UGGGGAGG	chr7:148702157-148702375(-)$1	218	30	38	13.0000
UGGAGAGG	chr19:57325487-57325717(-)$1	230	185	193	13.3000
UGCUGUGG	chr1:35652702-35652951(-)$1	249	51	59	12.3000
UGGUGAGG	chr17:75484225-75484478(+)$1	253	176	184	16.8000
UGCUGAGG	chr4:1806517-1806754(+)$1	237	187	195	16.6000
UGGUGAAG	chr1:19487436-19487687(-)$1	251	50	58	13.4000
ugaugaag	chr9:100777605-100777868(+)$1	263	86	94	13.8000
UGAUGCGG	chrX:70517624-70517878(+)$1	254	117	125	12.8000
UGCAGAGG	chr14:24113938-24114166(+)$1	228	146	154	13.1000
AGCUGAGG	chr16:28847471-28847734(+)$1	263	63	71	12.4000
UGGGGAGG	chr1:979483-979740(+)$1	257	33	41	13.0000
UGGUAAGG	chr9:117014773-117015022(+)$1	249	151	159	12.4000
UGGUGAGG	chr6:144812014-144812262(+)$1	248	222	230	16.8000
ugaugagg	chr2:232326205-232326473(-)$1	268	191	199	17.2000

#otherMatches

#Struct PSSM
eeeee###	chr1:67880748-67881031(-)$1	283	14	22	13.2000
+ddddmmm	chr7:103276709-103276944(-)$1	235	152	160	13.2000
C~~~~CCC	chr20:31022794-31023039(+)$1	245	117	125	17.2000
ee:::BB{	chr17:80193762-80194054(+)$1	292	94	102	12.6000
:=======	chr1:19474425-19474680(-)$1	255	20	28	12.5000
d22eeeee	chr14:102549353-102549619(-)$1	266	68	76	12.9000
eeee"""e	chr12:49666601-49666860(+)$1	259	18	26	12.9000
5a]ggggg	chrX:53589712-53589973(-)$1	261	93	101	13.3000
gg::dddd	chr14:101200385-101200611(+)$1	226	133	141	17.2000
hhoooooo	chr1:19474956-19475210(-)$1	254	188	196	13.7000
f!!bb[cc	chr19:57325237-57325471(-)$1	234	11	19	12.9000
mmmccc33	chr14:102550932-102551190(-)$1	258	106	114	12.5000
pccc4444	chr7:127341134-127341411(+)$1	277	241	249	16.8000
eeeedddd	chr12:112756954-112757265(-)$1	311	45	53	16.6000
cmmmmccc	chr14:21546492-21546748(+)$1	256	124	132	17.2000
dddd]bb]	chr9:116930028-116930252(+)$1	224	108	116	12.3000
fff[bb[a	chr2:11755225-11755468(+)$1	243	168	176	12.8000
qqqqdddd	chr17:1585083-1585368(-)$1	285	111	119	17.2000
hh]ccc44	chr11:130011740-130012027(+)$1	287	182	190	16.6000
BB}BB}CC	chr20:60905444-60905667(-)$1	223	163	171	12.8000
dooooood	chr17:79803647-79803853(-)$1	206	75	83	12.8000
eeeeeGGG	chr7:148717958-148718168(-)$1	210	108	116	12.4000
{FFFFFF{	chr2:102445918-102446157(+)$1	239	121	129	13.1000
ggggg::G	chr19:51857296-51857633(-)$1	337	231	239	13.8000
iiiiiiii	chr9:116994001-116994239(+)$1	238	138	146	12.8000
DDMMMMCC	chr6:52143441-52143712(-)$1	271	124	132	16.6000
hhhhhhnn	chr3:58084337-58084594(+)$1	257	104	112	12.5000
2dddd:::	chr16:28846373-28846609(+)$1	236	42	50	12.7000
ohhhhhhh	chr7:103629635-103629887(-)$1	252	130	138	12.3000
dmmmmddd	chr3:167750212-167750481(-)$1	269	68	76	13.4000
:ccc[bbf	chr1:19490652-19490888(-)$1	236	148	156	13.8000
FF}BBYYF	chr22:36690062-36690303(-)$1	241	164	172	12.6000
clllccc]	chr7:2403166-2403450(+)$1	284	120	128	13.7000
ee::::::	chr7:148711901-148712129(-)$1	228	80	88	13.8000
ffffqqqq	chr16:2814528-2814767(+)$1	239	44	52	11.9000
gggg22cc	chr21:46929283-46929528(+)$1	245	230	238	12.5000
[bba!!cc	chr7:148702157-148702375(-)$1	218	30	38	13.0000
999999dd	chr19:57325487-57325717(-)$1	230	185	193	13.3000
hhh!!bbm	chr1:35652702-35652951(-)$1	249	51	59	12.3000
fffffbbb	chr17:75484225-75484478(+)$1	253	176	184	16.8000
II}BB}DD	chr4:1806517-1806754(+)$1	237	187	195	16.6000
dnnnnndd	chr1:19487436-19487687(-)$1	251	50	58	13.4000
:::bb[cc	chr9:100777605-100777868(+)$1	263	86	94	13.8000
::dddd[c	chrX:70517624-70517878(+)$1	254	117	125	12.8000
eee]hhhh	chr14:24113938-24114166(+)$1	228	146	154	13.1000
qffffff3	chr16:28847471-28847734(+)$1	263	63	71	12.4000
cc####bb	chr1:979483-979740(+)$1	257	33	41	13.0000
:bb!!ccc	chr9:117014773-117015022(+)$1	249	151	159	12.4000
2dddd:II	chr6:144812014-144812262(+)$1	248	222	230	16.8000
::bb[hhh	chr2:232326205-232326473(-)$1	268	191	199	17.2000

#DB
(((((...	chr1:67880748-67881031(-)$1	1	14	22	13.2000
.((((...	chr7:103276709-103276944(-)$1	1	152	160	13.2000
)....)))	chr20:31022794-31023039(+)$1	1	117	125	17.2000
))...((.	chr17:80193762-80194054(+)$1	1	94	102	12.6000
.(((((((	chr1:19474425-19474680(-)$1	1	20	28	12.5000
)..)))))	chr14:102549353-102549619(-)$1	1	68	76	12.9000
((((...(	chr12:49666601-49666860(+)$1	1	18	26	12.9000
.).)))))	chrX:53589712-53589973(-)$1	1	93	101	13.3000
))..((((	chr14:101200385-101200611(+)$1	1	133	141	17.2000
((......	chr1:19474956-19475210(-)$1	1	188	196	13.7000
(..((.((	chr19:57325237-57325471(-)$1	1	11	19	12.9000
...)))..	chr14:102550932-102551190(-)$1	1	106	114	12.5000
.)))....	chr7:127341134-127341411(+)$1	1	241	249	16.8000
))))((((	chr12:112756954-112757265(-)$1	1	45	53	16.6000
(....)))	chr14:21546492-21546748(+)$1	1	124	132	17.2000
)))).)).	chr9:116930028-116930252(+)$1	1	108	116	12.3000
(((.((.(	chr2:11755225-11755468(+)$1	1	168	176	12.8000
....))))	chr17:1585083-1585368(-)$1	1	111	119	17.2000
)).)))..	chr11:130011740-130012027(+)$1	1	182	190	16.6000
)).)).))	chr20:60905444-60905667(-)$1	1	163	171	12.8000
(......)	chr17:79803647-79803853(-)$1	1	75	83	12.8000
))))))))	chr7:148717958-148718168(-)$1	1	108	116	12.4000
.((((((.	chr2:102445918-102446157(+)$1	1	121	129	13.1000
)))))..)	chr19:51857296-51857633(-)$1	1	231	239	13.8000
((((((((	chr9:116994001-116994239(+)$1	1	138	146	12.8000
((....((	chr6:52143441-52143712(-)$1	1	124	132	16.6000
((((((..	chr3:58084337-58084594(+)$1	1	104	112	12.5000
.))))...	chr16:28846373-28846609(+)$1	1	42	50	12.7000
.)))))))	chr7:103629635-103629887(-)$1	1	130	138	12.3000
(....)))	chr3:167750212-167750481(-)$1	1	68	76	13.4000
.(((.(((	chr1:19490652-19490888(-)$1	1	148	156	13.8000
)).))..)	chr22:36690062-36690303(-)$1	1	164	172	12.6000
(...))).	chr7:2403166-2403450(+)$1	1	120	128	13.7000
))......	chr7:148711901-148712129(-)$1	1	80	88	13.8000
((((....	chr16:2814528-2814767(+)$1	1	44	52	11.9000
))))..))	chr21:46929283-46929528(+)$1	1	230	238	12.5000
.(((..((	chr7:148702157-148702375(-)$1	1	30	38	13.0000
......))	chr19:57325487-57325717(-)$1	1	185	193	13.3000
(((..((.	chr1:35652702-35652951(-)$1	1	51	59	12.3000
)))))(((	chr17:75484225-75484478(+)$1	1	176	184	16.8000
)).)).))	chr4:1806517-1806754(+)$1	1	187	195	16.6000
(.....))	chr1:19487436-19487687(-)$1	1	50	58	13.4000
...((.((	chr9:100777605-100777868(+)$1	1	86	94	13.8000
..((((.(	chrX:70517624-70517878(+)$1	1	117	125	12.8000
))).))))	chr14:24113938-24114166(+)$1	1	146	154	13.1000
.)))))).	chr16:28847471-28847734(+)$1	1	63	71	12.4000
((....((	chr1:979483-979740(+)$1	1	33	41	13.0000
.((..(((	chr9:117014773-117015022(+)$1	1	151	159	12.4000
.)))).))	chr6:144812014-144812262(+)$1	1	222	230	16.8000
..((.(((	chr2:232326205-232326473(-)$1	1	191	199	17.2000

#PSSM
U : 0.86	A : 0.06	u : 0.04	G : 0.02	C : 0.02	
G : 0.92	g : 0.04	A : 0.02	U : 0.02	
A : 0.36	G : 0.32	C : 0.27	a : 0.04	
U : 0.78	A : 0.12	G : 0.06	u : 0.04	
G : 0.90	A : 0.06	g : 0.04	
A : 0.86	G : 0.04	U : 0.04	a : 0.04	C : 0.02	
G : 0.80	A : 0.12	C : 0.04	a : 0.02	g : 0.02	
G : 0.86	U : 0.04	C : 0.04	g : 0.04	A : 0.02	

#score	694.0000000000005
#seq	50
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_transcript_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
GGGGGG:::hhhhhhhhmmmmhhhhhhhh:::GGGGGGG:::eeeeellleeeee:ddddeeeeebb!!ccc!!addddmmmmdddd55555a22ccc22bb]eeeee22dddd:hhhhhhhhnnnnnhhhhhhhh:::::::a[ggggggg"""==========rrrrrrrrr==========]ggggggg]accc[dddd!!eeeee####eeeee"""ddddnnnnndddd333eeeee22eeeee22dddd]ccc::::GGGGGGGGGGGGGGDDDD:	chr3:48642228-48642517(-)$1	289	6	288	846.0000

#DB
((((((...((((((((....))))))))...(((((((...(((((...))))).(((((((((((..(((..(((((....)))).....)..)))..)).)))))..)))).((((((((.....)))))))).......(.(((((((...((((((((((.........)))))))))).))))))).)(((.((((..(((((....(((((...((((.....))))...)))))..)))))..)))).)))....)))))))))))))))))).	chr3:48642228-48642517(-)$1	1	6	288	846.0000

#PSSM
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	

#score	846.0
#seq	1
#width	282
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF656IDO_XRCC6_UTR_m3_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
GGGGGGG::bb[dddd!!ccc!!gggggggammmma]gggggggccc22dddd]bb:ccc[ffffff[ffffffcccooooooccc666666ffffffffffff]ccc::::::ccc[ccc!!eeeee!!cccccc[a!!ddddvvvvvvvvvvvvvdddd22accc22ccc22eeeee333ccc]cccggggggg!!ffffff!!cccnnnnnc	chr8:22878691-22878949(-)$1	258	4	219	645.0000

#DB
(((((((..((.((((..(((..((((((((....).))))))))))..)))).)).(((.((((((.(((((((((......)))......)))))))))))).)))......(((.(((..(((((..((((((.(..((((.............))))..))))..)))..)))))...))).)))(((((((..((((((..(((.....)	chr8:22878691-22878949(-)$1	1	4	219	645.0000

#PSSM
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	

#score	645.0
#seq	1
#width	215
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_CDS_m2_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
::::CCC{JJJJJJJJJJ:ffffff!!dddd[bbzzzzzzzzzzzzzzzzzbb]ddddffffff:::===========####ccc!!dddd!!ccc"""a!!bb[cccmmmmccc]bb22accc]dddd22ccc]===========::JJJJJJJJJJ}CCCccc[ccc[dddd[bbqqqqqqqqbbdddd]ccccccggggggg[bb!!a[ccc[ccc[dddd[ccc[bbtttttttttttbb]ccc]dddd]ccc]ccca22bb]gggggggCC	chr12:125270684-125270965(-)$1	281	4	280	828.0000

#DB
....(((.((((((((((.((((((..((((.((.................)).))))))))))...(((((((((((....(((..((((..(((...(..((.(((....))).))..)))).))))..))).)))))))))))..)))))))))).)))(((.(((.((((.((........)))))).))))))(((((((.((..(.(((.(((.((((.(((.((...........)).))).)))).))).))))..)).)))))))))	chr12:125270684-125270965(-)$1	1	4	280	828.0000

#PSSM
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	

#score	828.0
#seq	1
#width	276
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_UTR_m2_run2.nuc.txt

#NT
uccuccuccccg	chr20:35090092-35090360(+)$1	268	26	38	22.2962
UCCUCCUGCCCU	chr22:36678364-36678622(-)$1	258	20	32	19.7962
gccuccaccccc	chr19:42799045-42799310(+)$1	265	195	207	16.1851
cccuccuccccg	chr1:20812549-20812798(-)$1	249	35	47	19.9814
UCUACCUCCCCU	chr10:75568093-75568353(-)$1	260	25	37	16.0925
UCCUCUUCCCAA	chr1:183522756-183523087(+)$1	331	147	159	15.7222
GCCUCCUCCCCU	chr1:162353736-162354057(+)$1	321	122	134	20.9074
UCCUUUUCCCCA	chr12:56863503-56863770(+)$1	267	42	54	15.8148
UCCAUCUCCCCA	chr17:39978923-39979182(+)$1	259	79	91	15.1666
GCCUCCCCGCCU	chr19:4046985-4047226(-)$1	241	71	83	13.6851
CCCUCCUUCCCA	chr12:57923364-57923632(+)$1	268	74	86	16.2777
UCCUCCCUCCCA	chr11:61512814-61513069(+)$1	255	159	171	15.1666
UCCUCCUCUCUG	chr11:130014035-130014299(+)$1	264	146	158	15.6296
uccuccuccccu	chr10:24834998-24835246(+)$1	248	102	114	24.0555
CCCUCUUCUCCC	chr14:69255966-69256206(-)$1	240	17	29	14.1481
CCCUCUUCCCCU	chr17:40125975-40126272(+)$1	297	134	146	18.2222
UCAUCCUCCCUU	chr22:31722322-31722608(-)$1	286	131	143	16.4629
CCCUUCUCCCCU	chr2:219082059-219082310(+)$1	251	4	16	18.1296
UCUCCCUCCCCU	chr7:138729966-138730225(-)$1	259	123	135	16.0925
UCCUCCUCUCCC	chr1:32799829-32800067(-)$1	238	11	23	19.9814
AUCUCCUCCCCU	chr4:26323026-26323328(+)$1	302	136	148	16.8333
UCCUGGUCCCCA	chr20:33298238-33298466(+)$1	228	71	83	15.1666
UUCUCCUCCCUA	chr14:94843739-94843947(-)$1	208	5	17	15.3518
UCCUCAACCCCU	chr14:94844594-94844854(-)$1	260	80	92	16.4629
ccuuucuccccc	chr19:41828903-41829143(+)$1	240	41	53	13.3148
UCCUCCCGCCCG	chr7:2701593-2701865(+)$1	272	139	151	14.6111
uccuucccuccu	chrX:79927749-79928020(-)$1	271	117	129	13.9629
uccuccuccucc	chr7:152551721-152552005(+)$1	284	151	163	18.9629
UCCCCCUCCCGA	chr11:2160108-2160318(-)$1	210	120	132	14.7962
UCCACCUCCUCA	chr17:40946780-40947158(+)$1	378	59	71	14.7037
UUUUCCUCCCCU	chr18:60647367-60647644(+)$1	277	111	123	16.2777
UUCUCCUCCCUU	chr1:156109135-156109440(+)$1	305	2	14	16.4629
ACCUCCUCCCAC	chrX:153127219-153127455(-)$1	236	42	54	16.0925
UCCUCCUCUCCC	chr1:32799906-32800141(-)$1	235	85	97	19.9814
uccuccucuccu	chr1:20812502-20812719(-)$1	217	193	205	20.9999
uccuccccaccu	chr2:172016944-172017176(-)$1	232	63	75	16.9259
UCCUCUUCCCAU	chr19:42585428-42585665(+)$1	237	110	122	16.8333
UCCUCUUCCCCA	chr12:50476263-50476582(+)$1	319	12	24	19.4259
UCCUCAUCCCUC	chr3:185362334-185362553(-)$1	219	128	140	15.5370
CCCUUCUCCCCC	chr6:43147474-43147722(+)$1	248	98	110	17.1111
UGCUGCUCCCCU	chrX:106172313-106172564(+)$1	251	70	82	15.8148
uccuccuccucu	chr10:12206936-12207248(+)$1	312	112	124	19.9814
CCCUCCACCCCA	chr2:242756849-242757102(+)$1	253	146	158	16.9259
UUCUCCGCCCCU	chr19:18390561-18390836(-)$1	275	104	116	16.2777
CCUUCCUGCCCU	chr4:159047154-159047409(-)$1	255	116	128	13.6851
CCCUCCCCCCAA	chr11:2153778-2153981(-)$1	203	16	28	13.4999
CCAUCCUCCCCG	chr17:38247707-38247977(+)$1	270	258	270	15.9999
UCAUCCUCACCC	chr16:29999530-29999789(+)$1	259	14	26	15.3518
uccuccuccucu	chr20:31611309-31611513(+)$1	204	66	78	19.9814
UCCUCGUCCCCU	chr7:137563944-137564177(-)$1	233	109	121	20.1666
CCCUGCUCUCCC	chr6:30655826-30656180(-)$1	354	298	310	13.7777
UCCCCCUCUCCC	chr6:28122037-28122343(+)$1	306	133	145	15.8148
uccuccuccucu	chr20:31611229-31611467(+)$1	238	146	158	19.9814

#otherMatches

#Struct PSSM
22ccc:::::::	chr1:160328178-160328382(+)$1	204	60	72	16.1851
:::::::::::a	chr20:35090092-35090360(+)$1	268	26	38	22.2962
%%%%%%gggggg	chr22:36678364-36678622(-)$1	258	20	32	19.7962
dddd333bb]hh	chr19:42799045-42799310(+)$1	265	195	207	16.1851
sssssssseeee	chr1:20812549-20812798(-)$1	249	35	47	19.9814
PFFFFFF:::::	chr10:75568093-75568353(-)$1	260	25	37	16.0925
9999999ggggg	chr1:183522756-183523087(+)$1	331	147	159	15.7222
DDDDFFFFFFKK	chr1:162353736-162354057(+)$1	321	122	134	20.9074
::::::::::ff	chr12:56863503-56863770(+)$1	267	42	54	15.8148
::::::::::::	chr17:39978923-39979182(+)$1	259	79	91	15.1666
DDDCCC{DDDD{	chr19:4046985-4047226(-)$1	241	71	83	13.6851
:::::::FFFFF	chr12:57923364-57923632(+)$1	268	74	86	16.2777
mccc22ffffff	chr11:61512814-61513069(+)$1	255	159	171	15.1666
g4444dddd]dd	chr11:130014035-130014299(+)$1	264	146	158	15.6296
h:::::::::::	chr10:24834998-24835246(+)$1	248	102	114	24.0555
::::::::::::	chr14:69255966-69256206(-)$1	240	17	29	14.1481
==++++++++++	chr17:40125975-40126272(+)$1	297	134	146	18.2222
:::::::::ddd	chr22:31722322-31722608(-)$1	286	131	143	16.4629
KKHHHHHHHH::	chr2:219082059-219082310(+)$1	251	4	16	18.1296
^^^^^^^^^^^^	chr7:138729966-138730225(-)$1	259	123	135	16.0925
::::::::::::	chr1:32799829-32800067(-)$1	238	11	23	19.9814
>>>>>>>>>>>>	chr4:26323026-26323328(+)$1	302	136	148	16.8333
::ddddrrrrrr	chr20:33298238-33298466(+)$1	228	71	83	15.1666
EEEE{EEEEEDD	chr14:94843739-94843947(-)$1	208	5	17	15.3518
::hhhhhhhh[b	chr14:94844594-94844854(-)$1	260	80	92	16.4629
(eeeee++++++	chr19:41828903-41829143(+)$1	240	41	53	13.3148
^^^^^^^ccc]c	chr7:2701593-2701865(+)$1	272	139	151	14.6111
::::::::::::	chrX:79927749-79928020(-)$1	271	117	129	13.9629
EEEELLLCCCMM	chr7:152551721-152552005(+)$1	284	151	163	18.9629
uuuuuuuuuuud	chr11:2160108-2160318(-)$1	210	120	132	14.7962
dddd]eeeee::	chr17:40946780-40947158(+)$1	378	59	71	14.7037
]hhhhhhhh:ee	chr18:60647367-60647644(+)$1	277	111	123	16.2777
FFFFFCCC{FFF	chr1:156109135-156109440(+)$1	305	2	14	16.4629
vvvvvvvvvvvv	chrX:153127219-153127455(-)$1	236	42	54	16.0925
:::ccc[aqqqq	chr1:32799906-32800141(-)$1	235	85	97	19.9814
::::::::::::	chr1:20812502-20812719(-)$1	217	193	205	20.9999
::::::::::::	chr2:172016944-172017176(-)$1	232	63	75	16.9259
#dddd####ggg	chr19:42585428-42585665(+)$1	237	110	122	16.8333
::::::::::::	chr12:50476263-50476582(+)$1	319	12	24	19.4259
::::::::::::	chr3:185362334-185362553(-)$1	219	128	140	15.5370
iiiiii22ccc:	chr6:43147474-43147722(+)$1	248	98	110	17.1111
eeedddd4444c	chrX:106172313-106172564(+)$1	251	70	82	15.8148
::::::::::::	chr10:12206936-12207248(+)$1	312	112	124	19.9814
^^^^^^^^^^^^	chr2:242756849-242757102(+)$1	253	146	158	16.9259
::::::bbyyyy	chr19:18390561-18390836(-)$1	275	104	116	16.2777
::::DDDD::::	chr4:159047154-159047409(-)$1	255	116	128	13.6851
::::::::::::	chr11:2153778-2153981(-)$1	203	16	28	13.4999
EEEE::::::::	chr17:38247707-38247977(+)$1	270	258	270	15.9999
qqqqqqqccc]a	chr16:29999530-29999789(+)$1	259	14	26	15.3518
::::::::::::	chr20:31611309-31611513(+)$1	204	66	78	19.9814
^^^^^^^^^^^^	chr7:137563944-137564177(-)$1	233	109	121	20.1666
nnnnbb333fff	chr6:30655826-30656180(-)$1	354	298	310	13.7777
33a22ccc]ddd	chr6:28122037-28122343(+)$1	306	133	145	15.8148
::::::::::::	chr20:31611229-31611467(+)$1	238	146	158	19.9814

#DB
..))).......	chr1:160328178-160328382(+)$1	1	60	72	16.1851
...........(	chr20:35090092-35090360(+)$1	1	26	38	22.2962
......((((((	chr22:36678364-36678622(-)$1	1	20	32	19.7962
))))...)).))	chr19:42799045-42799310(+)$1	1	195	207	16.1851
........))))	chr1:20812549-20812798(-)$1	1	35	47	19.9814
.((((((.....	chr10:75568093-75568353(-)$1	1	25	37	16.0925
.......)))))	chr1:183522756-183523087(+)$1	1	147	159	15.7222
((((((((((..	chr1:162353736-162354057(+)$1	1	122	134	20.9074
..........((	chr12:56863503-56863770(+)$1	1	42	54	15.8148
............	chr17:39978923-39979182(+)$1	1	79	91	15.1666
((((((.((((.	chr19:4046985-4047226(-)$1	1	71	83	13.6851
.......(((((	chr12:57923364-57923632(+)$1	1	74	86	16.2777
.)))..))))))	chr11:61512814-61513069(+)$1	1	159	171	15.1666
)....)))).))	chr11:130014035-130014299(+)$1	1	146	158	15.6296
)...........	chr10:24834998-24835246(+)$1	1	102	114	24.0555
............	chr14:69255966-69256206(-)$1	1	17	29	14.1481
((..........	chr17:40125975-40126272(+)$1	1	134	146	18.2222
.........(((	chr22:31722322-31722608(-)$1	1	131	143	16.4629
..((((((((..	chr2:219082059-219082310(+)$1	1	4	16	18.1296
............	chr7:138729966-138730225(-)$1	1	123	135	16.0925
............	chr1:32799829-32800067(-)$1	1	11	23	19.9814
............	chr4:26323026-26323328(+)$1	1	136	148	16.8333
..((((......	chr20:33298238-33298466(+)$1	1	71	83	15.1666
((((.(((((((	chr14:94843739-94843947(-)$1	1	5	17	15.3518
..((((((((.(	chr14:94844594-94844854(-)$1	1	80	92	16.4629
.(((((......	chr19:41828903-41829143(+)$1	1	41	53	13.3148
.......))).)	chr7:2701593-2701865(+)$1	1	139	151	14.6111
............	chrX:79927749-79928020(-)$1	1	117	129	13.9629
((((...(((..	chr7:152551721-152552005(+)$1	1	151	163	18.9629
...........)	chr11:2160108-2160318(-)$1	1	120	132	14.7962
)))).)))))..	chr17:40946780-40947158(+)$1	1	59	71	14.7037
.)))))))).((	chr18:60647367-60647644(+)$1	1	111	123	16.2777
((((((((.(((	chr1:156109135-156109440(+)$1	1	2	14	16.4629
............	chrX:153127219-153127455(-)$1	1	42	54	16.0925
...(((.(....	chr1:32799906-32800141(-)$1	1	85	97	19.9814
............	chr1:20812502-20812719(-)$1	1	193	205	20.9999
............	chr2:172016944-172017176(-)$1	1	63	75	16.9259
.((((....(((	chr19:42585428-42585665(+)$1	1	110	122	16.8333
............	chr12:50476263-50476582(+)$1	1	12	24	19.4259
............	chr3:185362334-185362553(-)$1	1	128	140	15.5370
))))))..))).	chr6:43147474-43147722(+)$1	1	98	110	17.1111
)))))))....)	chrX:106172313-106172564(+)$1	1	70	82	15.8148
............	chr10:12206936-12207248(+)$1	1	112	124	19.9814
............	chr2:242756849-242757102(+)$1	1	146	158	16.9259
......((....	chr19:18390561-18390836(-)$1	1	104	116	16.2777
....))))....	chr4:159047154-159047409(-)$1	1	116	128	13.6851
............	chr11:2153778-2153981(-)$1	1	16	28	13.4999
))))........	chr17:38247707-38247977(+)$1	1	258	270	15.9999
.......))).)	chr16:29999530-29999789(+)$1	1	14	26	15.3518
............	chr20:31611309-31611513(+)$1	1	66	78	19.9814
............	chr7:137563944-137564177(-)$1	1	109	121	20.1666
....))...)))	chr6:30655826-30656180(-)$1	1	298	310	13.7777
..)..))).)))	chr6:28122037-28122343(+)$1	1	133	145	15.8148
............	chr20:31611229-31611467(+)$1	1	146	158	19.9814

#PSSM
U : 0.51	C : 0.18	u : 0.16	c : 0.03	G : 0.03	A : 0.03	g : 0.01	
C : 0.66	c : 0.22	U : 0.09	G : 0.01	
C : 0.64	c : 0.20	U : 0.07	A : 0.05	u : 0.01	
U : 0.66	u : 0.22	A : 0.05	C : 0.05	
C : 0.64	c : 0.18	U : 0.07	G : 0.05	u : 0.03	
C : 0.59	c : 0.22	U : 0.11	G : 0.03	A : 0.03	
U : 0.62	u : 0.16	C : 0.07	G : 0.03	A : 0.03	c : 0.03	a : 0.01	
C : 0.68	c : 0.22	G : 0.05	U : 0.03	
C : 0.61	c : 0.16	U : 0.12	u : 0.03	G : 0.01	a : 0.01	A : 0.01	
C : 0.75	c : 0.14	u : 0.07	U : 0.01	
C : 0.59	c : 0.22	U : 0.09	A : 0.07	G : 0.01	
U : 0.31	A : 0.22	C : 0.18	u : 0.12	c : 0.05	G : 0.05	g : 0.03	

#score	913.0740740740732
#seq	54
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_transcript_m3_run1.nuc.txt

#NT
CCUUCCCACCU	chr9:33265316-33265575(+)$1	259	136	147	19.2264
ccuucccuccu	chrX:133930373-133930796(-)$1	423	374	385	22.9999
ccuucccuucc	chr1:205171070-205171352(-)$1	282	90	101	22.0566
cccucccuccc	chr1:211433066-211433433(+)$1	367	88	99	20.2641
CCUCCCCACCC	chr20:60895864-60896101(-)$1	237	63	74	18.9433
ccuucccugcc	chr16:16285869-16286154(-)$1	285	40	51	22.1509
CUUUCCCUCCA	chr2:242756898-242757240(+)$1	342	93	104	17.7169
ccuuccccccc	chr7:917220-917482(+)$1	262	229	240	20.9245
ccuccccuucc	chr12:121267929-121268213(-)$1	284	29	40	20.0754
CCUCCCCUGCC	chr22:50785231-50785517(+)$1	286	117	128	20.1698
CCUUCCCUGCC	chr16:85687005-85687238(+)$1	233	204	215	22.1509
CCUCCCGUCCC	chr2:242756645-242756916(+)$1	271	18	29	17.9056
CCUUCCCUCCC	chr16:15216471-15216717(-)$1	246	70	81	24.6981
ccuuuccuccu	chr20:60892886-60893133(-)$1	247	33	44	18.6603
CCUUCCCUGCC	chr19:54369669-54369969(+)$1	300	164	175	22.1509
ccuucccuccg	chr11:2159992-2160200(-)$1	208	135	146	21.7735
ccuucccAGCU	chr12:7045611-7045869(+)$1	258	11	22	16.6792
CCGUCCCucca	chr11:46398658-46398928(+)$1	270	119	130	17.8113
UCUUCCCUCCC	chr9:37206201-37206513(+)$1	312	137	148	20.6415
UCUucccuccc	chr11:995631-995965(+)$1	334	94	105	20.6415
CCUACCCUCUC	chr22:51020011-51020258(-)$1	247	94	105	17.1509
ccuccccuccc	chr9:136779718-136779978(-)$1	260	32	43	22.7169
CAUCCCCUCCU	chr19:48957726-48958006(+)$1	280	149	160	16.3962
CCGCCCCUCCC	chr11:60899155-60899454(-)$1	299	107	118	18.2830
ccuucccccca	chr14:99976820-99977149(+)$1	329	33	44	18.4716
CCUGCCCUCAC	chr18:77682825-77683074(-)$1	249	131	142	17.1509
CCUCCCCGCCA	chr19:7706665-7707003(+)$1	338	242	253	16.2075
ccuuccccccc	chr12:122260972-122261278(+)$1	306	267	278	20.9245
ccuucccuucc	chr3:196538088-196538337(+)$1	249	6	17	22.0566
ccuccccuccu	chr1:2027223-2027524(+)$1	301	94	105	21.0188
cccacccuccc	chr1:16459028-16459315(-)$1	287	237	248	17.1509
ccuugccuccu	chr19:7935461-7935730(-)$1	269	143	154	18.4716
CCUCUCCUCCA	chr20:60924895-60925142(-)$1	247	128	139	15.9245
UCUCCCCUCCU	chr19:45571338-45571638(+)$1	300	134	145	16.9622
ccuuccccucc	chr20:45854081-45854358(-)$1	277	47	58	18.2830
ccuucccuccu	chr6:128513809-128514148(-)$1	339	49	60	22.9999
UCUUCCCUCCA	chr6:31372139-31372505(+)$1	366	308	319	18.1886
CCUUUCCUUCC	chr11:2942941-2943235(+)$1	294	141	152	17.7169
ccuccccuccu	chr7:33404208-33404467(+)$1	259	139	150	21.0188
CCUGCCCUCCU	chr9:136757818-136758072(-)$1	254	241	252	19.8867
ccuucccucau	chr20:60892785-60893029(-)$1	244	31	42	18.5660
CUUUCCCUCCC	chr21:38629898-38630190(-)$1	292	148	159	20.1698
CCUUCUCUGCC	chr19:1424527-1424812(+)$1	285	118	129	17.4339
ucuucccuccc	chr1:245133919-245134200(+)$1	281	73	84	20.6415
ccuucccuccc	chr7:737361-737635(-)$1	274	42	53	24.6981
CCUUCCCUCCU	chr19:6731551-6731862(-)$1	311	149	160	22.9999
ccuucccugcc	chr20:60892732-60892983(-)$1	251	63	74	22.1509
CCUUCCCUUUU	chr19:6693480-6693750(-)$1	270	106	117	15.9245
ccuucccuucc	chr11:17917957-17918214(-)$1	257	70	81	22.0566
CCUUCCCAGCC	chr6:157234992-157235298(+)$1	306	145	156	18.3773
ccuccccuccc	chr1:224621943-224622250(-)$1	307	106	117	22.7169
ccuccccuucc	chrX:19532547-19532822(-)$1	275	113	124	20.0754

#otherMatches

#Struct PSSM
HH:::eeeeem	chr7:158188714-158188985(-)$1	271	177	188	17.4339
::EEEEE::::	chr9:33265316-33265575(+)$1	259	136	147	19.2264
:::::::::::	chrX:133930373-133930796(-)$1	423	374	385	22.9999
666ccc:::::	chr1:205171070-205171352(-)$1	282	90	101	22.0566
eee"""cccoo	chr1:211433066-211433433(+)$1	367	88	99	20.2641
eee^^^^^^^^	chr20:60895864-60896101(-)$1	237	63	74	18.9433
:::::::DDDD	chr16:16285869-16286154(-)$1	285	40	51	22.1509
^^^^^^^^^^^	chr2:242756898-242757240(+)$1	342	93	104	17.7169
:::::::::::	chr7:917220-917482(+)$1	262	229	240	20.9245
:::::::::::	chr12:121267929-121268213(-)$1	284	29	40	20.0754
uuuuuuucccc	chr22:50785231-50785517(+)$1	286	117	128	20.1698
fffHHHHHHHH	chr16:85687005-85687238(+)$1	233	204	215	22.1509
%%%%%%cccll	chr2:242756645-242756916(+)$1	271	18	29	17.9056
'''''bb''''	chr16:15216471-15216717(-)$1	246	70	81	24.6981
:::::::::::	chr20:60892886-60893133(-)$1	247	33	44	18.6603
::::::ccc!!	chr19:54369669-54369969(+)$1	300	164	175	22.1509
GG@@@@@@@@@	chr11:2159992-2160200(-)$1	208	135	146	21.7735
:::::::::::	chr12:7045611-7045869(+)$1	258	11	22	16.6792
CCCYYBB~~~~	chr11:46398658-46398928(+)$1	270	119	130	17.8113
:::::::::::	chr9:37206201-37206513(+)$1	312	137	148	20.6415
cc4444ccc22	chr11:995631-995965(+)$1	334	94	105	20.6415
bb22ffffff]	chr22:51020011-51020258(-)$1	247	94	105	17.1509
2ccc:::::::	chr9:136779718-136779978(-)$1	260	32	43	22.7169
ttttttttttt	chr19:48957726-48958006(+)$1	280	149	160	16.3962
::ddddqqqqq	chr11:60899155-60899454(-)$1	299	107	118	18.2830
CCC{DDDD:::	chr14:99976820-99977149(+)$1	329	33	44	18.4716
dd:ccc####d	chr18:77682825-77683074(-)$1	249	131	142	17.1509
999999999ff	chr19:7706665-7707003(+)$1	338	242	253	16.2075
GGGGGG~~~~D	chr12:122260972-122261278(+)$1	306	267	278	20.9245
:::::::::::	chr3:196538088-196538337(+)$1	249	6	17	22.0566
:::::::::::	chr1:2027223-2027524(+)$1	301	94	105	21.0188
:::::::::::	chr1:16459028-16459315(-)$1	287	237	248	17.1509
eee[bbppppp	chr19:7935461-7935730(-)$1	269	143	154	18.4716
^^^^^^^^^^^	chr20:60924895-60925142(-)$1	247	128	139	15.9245
]iiiiiiiii3	chr19:45571338-45571638(+)$1	300	134	145	16.9622
:::::::::::	chr20:45854081-45854358(-)$1	277	47	58	18.2830
:::::::::::	chr6:128513809-128514148(-)$1	339	49	60	22.9999
hhh^^^^^^^^	chr6:31372139-31372505(+)$1	366	308	319	18.1886
F:::::::eee	chr11:2942941-2943235(+)$1	294	141	152	17.7169
::::ddddqqq	chr7:33404208-33404467(+)$1	259	139	150	21.0188
DD}DDDD}BB}	chr9:136757818-136758072(-)$1	254	241	252	19.8867
:::::::::::	chr20:60892785-60893029(-)$1	244	31	42	18.5660
:::::::ffff	chr21:38629898-38630190(-)$1	292	148	159	20.1698
iiii:::::::	chr19:1424527-1424812(+)$1	285	118	129	17.4339
:::::::::::	chr1:245133919-245134200(+)$1	281	73	84	20.6415
:::::::::::	chr7:737361-737635(-)$1	274	42	53	24.6981
!a^^^^^^^^^	chr19:6731551-6731862(-)$1	311	149	160	22.9999
:::::::::::	chr20:60892732-60892983(-)$1	251	63	74	22.1509
sssssssssgg	chr19:6693480-6693750(-)$1	270	106	117	15.9245
:::::::::::	chr11:17917957-17918214(-)$1	257	70	81	22.0566
^^^^^^^^bbf	chr6:157234992-157235298(+)$1	306	145	156	18.3773
cc:::::::::	chr1:224621943-224622250(-)$1	307	106	117	22.7169
:::::::::::	chrX:19532547-19532822(-)$1	275	113	124	20.0754

#DB
((...(((((.	chr7:158188714-158188985(-)$1	1	177	188	17.4339
..)))))....	chr9:33265316-33265575(+)$1	1	136	147	19.2264
...........	chrX:133930373-133930796(-)$1	1	374	385	22.9999
...))).....	chr1:205171070-205171352(-)$1	1	90	101	22.0566
(((...(((..	chr1:211433066-211433433(+)$1	1	88	99	20.2641
(((........	chr20:60895864-60896101(-)$1	1	63	74	18.9433
.......((((	chr16:16285869-16286154(-)$1	1	40	51	22.1509
...........	chr2:242756898-242757240(+)$1	1	93	104	17.7169
...........	chr7:917220-917482(+)$1	1	229	240	20.9245
...........	chr12:121267929-121268213(-)$1	1	29	40	20.0754
.......)))(	chr22:50785231-50785517(+)$1	1	117	128	20.1698
)))))))))))	chr16:85687005-85687238(+)$1	1	204	215	22.1509
......(((..	chr2:242756645-242756916(+)$1	1	18	29	17.9056
.....((....	chr16:15216471-15216717(-)$1	1	70	81	24.6981
...........	chr20:60892886-60893133(-)$1	1	33	44	18.6603
......(((..	chr19:54369669-54369969(+)$1	1	164	175	22.1509
)).........	chr11:2159992-2160200(-)$1	1	135	146	21.7735
...........	chr12:7045611-7045869(+)$1	1	11	22	16.6792
)))..))....	chr11:46398658-46398928(+)$1	1	119	130	17.8113
...........	chr9:37206201-37206513(+)$1	1	137	148	20.6415
))....)))..	chr11:995631-995965(+)$1	1	94	105	20.6415
))..)))))).	chr22:51020011-51020258(-)$1	1	94	105	17.1509
.))).......	chr9:136779718-136779978(-)$1	1	32	43	22.7169
...........	chr19:48957726-48958006(+)$1	1	149	160	16.3962
..((((.....	chr11:60899155-60899454(-)$1	1	107	118	18.2830
(((.((((...	chr14:99976820-99977149(+)$1	1	33	44	18.4716
)).(((....(	chr18:77682825-77683074(-)$1	1	131	142	17.1509
.........))	chr19:7706665-7707003(+)$1	1	242	253	16.2075
))))))....)	chr12:122260972-122261278(+)$1	1	267	278	20.9245
...........	chr3:196538088-196538337(+)$1	1	6	17	22.0566
...........	chr1:2027223-2027524(+)$1	1	94	105	21.0188
...........	chr1:16459028-16459315(-)$1	1	237	248	17.1509
(((.((.....	chr19:7935461-7935730(-)$1	1	143	154	18.4716
...........	chr20:60924895-60925142(-)$1	1	128	139	15.9245
.))))))))).	chr19:45571338-45571638(+)$1	1	134	145	16.9622
...........	chr20:45854081-45854358(-)$1	1	47	58	18.2830
...........	chr6:128513809-128514148(-)$1	1	49	60	22.9999
(((........	chr6:31372139-31372505(+)$1	1	308	319	18.1886
).......(((	chr11:2942941-2943235(+)$1	1	141	152	17.7169
....((((...	chr7:33404208-33404467(+)$1	1	139	150	21.0188
)).)))).)).	chr9:136757818-136758072(-)$1	1	241	252	19.8867
...........	chr20:60892785-60893029(-)$1	1	31	42	18.5660
.......((((	chr21:38629898-38630190(-)$1	1	148	159	20.1698
)))).......	chr19:1424527-1424812(+)$1	1	118	129	17.4339
...........	chr1:245133919-245134200(+)$1	1	73	84	20.6415
...........	chr7:737361-737635(-)$1	1	42	53	24.6981
.(.........	chr19:6731551-6731862(-)$1	1	149	160	22.9999
...........	chr20:60892732-60892983(-)$1	1	63	74	22.1509
.........))	chr19:6693480-6693750(-)$1	1	106	117	15.9245
...........	chr11:17917957-17918214(-)$1	1	70	81	22.0566
........)))	chr6:157234992-157235298(+)$1	1	145	156	18.3773
)).........	chr1:224621943-224622250(-)$1	1	106	117	22.7169
...........	chrX:19532547-19532822(-)$1	1	113	124	20.0754

#PSSM
c : 0.47	C : 0.43	U : 0.07	u : 0.01	
c : 0.49	C : 0.45	U : 0.03	A : 0.01	
U : 0.47	u : 0.45	c : 0.03	G : 0.03	
u : 0.37	U : 0.28	C : 0.15	c : 0.11	G : 0.03	A : 0.01	a : 0.01	
c : 0.47	C : 0.45	U : 0.03	u : 0.01	g : 0.01	
c : 0.50	C : 0.45	G : 0.01	U : 0.01	
c : 0.50	C : 0.47	G : 0.01	
u : 0.43	U : 0.39	A : 0.07	c : 0.07	G : 0.01	
c : 0.35	C : 0.32	G : 0.13	u : 0.11	g : 0.03	U : 0.03	
c : 0.49	C : 0.43	U : 0.03	A : 0.01	a : 0.01	
c : 0.32	C : 0.28	U : 0.13	u : 0.13	A : 0.07	a : 0.03	g : 0.01	

#score	1047.8679245283015
#seq	53
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_UTR_m1_run1.nuc.txt

#NT
ugugugugugugugugugugugugugugugugcgugugu	chr21:44450298-44450555(+)$1	257	73	112	98.6037
CCUCuguguguguguguguguguguguguguguguaugu	chr1:161183965-161184240(+)$1	275	90	129	86.8113
ugugugugugugugugugugugugugugugugugugugu	chr9:5127992-5128251(+)$1	259	88	127	102.7547
uguguuugugugugugugugugugugugugugugugcgu	chr17:40353363-40353675(-)$1	312	97	136	93.6981
UGUGCCuguguguguguguuugugugugugugugugugu	chr5:149233763-149234036(+)$1	273	167	206	90.0188
ucUUugugugugugugugugugugugugugugugugugu	chr17:79531062-79531324(-)$1	262	176	215	94.2641
ugugugugugugugugugugugugugugugugugugugu	chr15:77404856-77405130(-)$1	274	83	122	102.7547
uguguguguguguguguguguguguguguguguguaugu	chr21:30716863-30717151(+)$1	288	92	131	99.1698
uguguguguguguaugugugugugugugugugugugugu	chr12:122459754-122460097(+)$1	343	68	107	98.2264
ugugcgucugugugugugcgucugugugcgcgugugugu	chr9:138899044-138899329(-)$1	285	0	39	76.3396
uguguguguguguguguguguauguguguguguaugugu	chr3:138671197-138671457(+)$1	260	96	135	94.0754
ucUUugugugugugugugugugugugugugugugugugu	chr17:79530968-79531238(-)$1	270	90	129	94.2641
GguguguguguguguguuugugaguguguguUUGCCUGU	chr14:60760292-60760580(+)$1	288	96	135	77.6603
ugugugugugugugugugugugugugugugugugugugu	chr6:31619929-31620221(-)$1	292	85	124	102.7547
UGUGCCuguguguguguguuugugugugugugugugugu	chr5:149233836-149234113(+)$1	277	94	133	90.0188
Cguguguguguguguguaugcgcgugugugucugugugu	chr2:139329446-139329729(+)$1	283	121	160	81.8113
ugugugugugugucugugugugugugucugugugugugu	chr7:20180288-20180565(-)$1	277	89	128	93.6037
UAGGAgugaguguaugugugugugugugugugugugugu	chr1:206906523-206906825(+)$1	302	88	127	80.9622
AGGguguguguguguguguguguguguguguaugAAUGG	chr3:15483615-15483882(+)$1	267	97	136	78.2264
ugugugugugugugugugugugugugugugugugugugu	chr7:149186166-149186483(-)$1	317	119	158	102.7547
Cgugcguguguguguguguguuuguguauguguauaugu	chr7:17920704-17920987(-)$1	283	4	43	78.1320
UCugugugugugugugugugugugugugugugugugugu	chr12:53806629-53806894(+)$1	265	83	122	98.7924
uguguguguaucugugugugugugcgcgugugugugugu	chr2:175938012-175938244(-)$1	232	19	58	84.1698
GGAguguguguguguguguguguuucugugggugugugG	chr19:32976186-32976483(+)$1	297	109	148	76.7169
AguguguguguguguguguguguguguguaugcguUUUU	chr12:69666554-69666827(+)$1	273	94	133	81.6226
uguguguguguguguauguguguguguguguguguaugu	chr20:46283505-46283792(+)$1	287	87	126	94.7358
uguguguguguuugugugugugcgugugcgugugugugu	chr11:77376624-77376948(-)$1	324	105	144	89.1698
ugugugugugugugugugugugugugugugugugugugu	chr5:96366252-96366521(+)$1	269	72	111	102.7547
ugugugcauguguguguguaugugugugugcaugcgugu	chr11:791048-791335(-)$1	287	96	135	76.7169
uguguguguguguguguguguguguaugugcgugugcgu	chr3:5025408-5025667(+)$1	259	107	146	89.5471
ugugugugugugugugugugugugugugugugugugugu	chr22:26122799-26123103(+)$1	304	81	120	102.7547
ggagugugugugugugugugugugcgugugugugcgugu	chr6:42048814-42049097(+)$1	283	91	130	86.3396
ugugugugugugugcaugugugugugugugugugugugu	chr20:42178261-42178546(+)$1	285	93	132	93.5094
ugugugugggggugugugugugugugugugugugugugu	chr1:67874919-67875197(-)$1	278	83	122	93.6981
Agugugugugucugugucagugugugugugugugugugu	chr1:110453234-110453540(+)$1	306	105	144	85.4905
ugcgugcgugcgugugugugugugugugugugugugugu	chr1:40840181-40840459(+)$1	278	76	115	89.3584
ugugugugugcgugugugucagucuguuugugagugugu	chr12:123779998-123780291(-)$1	293	96	135	75.9622
uguguguguguguguguguuuauguauguauguaugugu	chr17:27588209-27588545(-)$1	336	95	134	80.9622
ugugugugugugugugugugugugugugugugugugugu	chr19:55682519-55682792(-)$1	273	79	118	102.7547
ugugugugugugugugugugugugugugugugugugugu	chrX:119572390-119572673(-)$1	283	86	125	102.7547
uguggguguguggguguauaggugugugugggugugugu	chr7:135612939-135613192(-)$1	253	108	147	76.5283
ugugugugugugugugugugugugugugugugugcuugu	chr1:158580748-158581058(-)$1	310	103	142	94.7358
ugugugugugugugugugugugugugugugugugugugu	chr6:47592339-47592672(+)$1	333	76	115	102.7547
GCugugugugugugugugugugugugugugugugugugu	chr12:56991224-56991466(-)$1	242	6	45	95.1132
ugugugugcgugcguguguguguguguaugugcguaugu	chr22:21802033-21802298(+)$1	265	24	63	81.4339
uguguguuugugugugugugugugugugugugugugugu	chr6:160526847-160527155(+)$1	308	82	121	98.2264
ugugugugugugugugugugugugugugugugugugugu	chr6:143748091-143748360(-)$1	269	88	127	102.7547
uguguguguguguguaugugugugugugugugugugugu	chr16:69733648-69733931(+)$1	283	91	130	98.3207
UGGgugugugugugugugugcgugcgugugugugugugu	chr10:102308648-102308907(+)$1	259	149	188	90.1132
ugugugucugugagugucuguguguguguaugugugCGC	chr17:17942628-17942926(+)$1	298	121	160	76.0566
ugugugugugugugugugugugugugugugugugugugu	chr19:17397402-17397663(+)$1	261	55	94	102.7547
ugugugugugugugugugugcguguguguguUCAAGUGC	chr1:118170371-118170642(+)$1	271	95	134	77.2830

#otherMatches

#Struct PSSM
=[annnnna]==============]dddd]ccc4444dd	chr1:42643307-42643573(-)$1	266	107	146	76.0566
[ccc[a[a[a[a[ccc[ffffff"""a[a!!ccc$$$$$	chr21:44450298-44450555(+)$1	257	73	112	98.6037
]dddd::::::::::::::::::::BB{BB{CCC:::::	chr1:161183965-161184240(+)$1	275	90	129	86.8113
ggg4444bb]dddd]dddd]bb:dddd####bb[fffff	chr9:5127992-5128251(+)$1	259	88	127	102.7547
a]a]eeeee22dddd333eeeee::::::::::eeeeem	chr17:40353363-40353675(-)$1	312	97	136	93.6981
cFFFFFF}BB::::::::::eeeee[a[a[ffffff[hh	chr5:149233763-149234036(+)$1	273	167	206	90.0188
444dddd22a]ccchhhhhhhh]dddd]bb]cccdddd2	chr17:79531062-79531324(-)$1	262	176	215	94.2641
ccc22bb]a]a22eeeee]hhhhhhhh::::::JJJJJJ	chr15:77404856-77405130(-)$1	274	83	122	102.7547
ffff]eeeee]a]dddd]ccc::==============oo	chr21:30716863-30717151(+)$1	288	92	131	99.1698
nnnbb]bb]a]bb]ccc]ggggggg]bb]bb]bb]====	chr12:122459754-122460097(+)$1	343	68	107	98.2264
:::::EEEEE{DDDD{DDDDHHHHHHHH:==========	chr9:138899044-138899329(-)$1	285	0	39	76.3396
ggg[dddd####dddd[===========mmmm=======	chr3:138671197-138671457(+)$1	260	96	135	94.0754
444dddd22a]ccchhhhhhhh]dddd]bb]cccdddd:	chr17:79530968-79531238(-)$1	270	90	129	94.2641
ggggg22a22ccc333dddd22dddd]ffffffccc[bb	chr14:60760292-60760580(+)$1	288	96	135	77.6603
=[ccc!!bb"""ccc[eeeee[bbccc[a"""bb[ffff	chr6:31619929-31620221(-)$1	292	85	124	102.7547
c22ccc::::::::::::::eeeee[a[a[ffffff[hh	chr5:149233836-149234113(+)$1	277	94	133	90.0188
eeeeegggggggmmmmggggggg:::::::::::::::f	chr2:139329446-139329729(+)$1	283	121	160	81.8113
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:20180288-20180565(-)$1	277	89	128	93.6037
cc[a^^^^^^^^^^^^^^^^^^^^^^a]ccc]ccc]bb]	chr1:206906523-206906825(+)$1	302	88	127	80.9622
gggggg[eeeee[ccc[eeeee!!cccqqqqqqqqccc]	chr3:15483615-15483882(+)$1	267	97	136	78.2264
DOOOOOOEEEEE{CCC:::::::::::::dddd[ccc!!	chr7:149186166-149186483(-)$1	317	119	158	102.7547
:::::::CCC{DDDD{GGGGGGG{BB{DDDD{EEEEE::	chr7:17920704-17920987(-)$1	283	4	43	78.1320
fff]bbBB}A}A}AZZZDDDDZZZDDDDYYBBHHHHHHH	chr12:53806629-53806894(+)$1	265	83	122	98.7924
FFFKKBB{EEEEEKKBB{CCC::ddddoooooodddd::	chr2:175938012-175938244(-)$1	232	19	58	84.1698
hhh22ccc]ccc]bb]bb]ccc22dddd666666dddd]	chr19:32976186-32976483(+)$1	297	109	148	76.7169
dd:HHHHHHHHDDDDKKGGGGGGG{A{BBKKGGGGGGG:	chr12:69666554-69666827(+)$1	273	94	133	81.6226
tttttttttttbb]dddd4444ccc333cccccc[dddd	chr20:46283505-46283792(+)$1	287	87	126	94.7358
DDDMMMMGGGGGGGNNNNNCCC{DDDD{EEEEE{CCCKK	chr11:77376624-77376948(-)$1	324	105	144	89.1698
::::::::::dddd[bb[bb[dddd[dddd[a[ccc"""	chr5:96366252-96366521(+)$1	269	72	111	102.7547
&&&&&==========wwwwwwwwwwwwww==========	chr11:791048-791335(-)$1	287	96	135	76.7169
nnbb]bb]ccc]a]eeeee==========oooooo====	chr3:5025408-5025667(+)$1	259	107	146	89.5471
ndddd]bb]ccc]bb]bb]ccc]dddda!!dddd[dddd	chr22:26122799-26123103(+)$1	304	81	120	102.7547
dddd:::EEEEE{CCC{CCC{CCC{CCCLLLDDDDiiii	chr6:42048814-42049097(+)$1	283	91	130	86.3396
ccc[a[ccc####dddd[a[bb[a[ddddtttttttttt	chr20:42178261-42178546(+)$1	285	93	132	93.5094
fffdddd[ccc[ccc[eeeee"""a[dddd[a[bb++++	chr1:67874919-67875197(-)$1	278	83	122	93.6981
qqqqqa]a]eeeee22eeeee]ccc]aggggggg[bb[d	chr1:110453234-110453540(+)$1	306	105	144	85.4905
hmmmmhhhhhhhh22eeeee]bb:::::::::::::CCC	chr1:40840181-40840459(+)$1	278	76	115	89.3584
f:ffffff[eeeee[ccc!!dddd[eeeee[ccc"""cc	chr12:123779998-123780291(-)$1	293	96	135	75.9622
hhh:::::EEEEE}BB}HHHHHHHHYYDDDDYYCCCA}B	chr17:27588209-27588545(-)$1	336	95	134	80.9622
4bb]ffffff22cccbb[ccc[dddd[a[a!!ccc"""d	chr19:55682519-55682792(-)$1	273	79	118	102.7547
"""a[bb!!ffffffbb!!dddd####ccc[bb$$$$$f	chrX:119572390-119572673(-)$1	283	86	125	102.7547
$$hhhhhhhh[ccc!!ffffff[bb"""eeeee!!bbcc	chr7:135612939-135613192(-)$1	253	108	147	76.5283
:::::::::::::::::ccc[eeeee[hhhhhhhhssss	chr1:158580748-158581058(-)$1	310	103	142	94.7358
JJJJJJJJJJ{CCC{BBccc"""================	chr6:47592339-47592672(+)$1	333	76	115	102.7547
ddnnnnndddd:A{DDDD{BBhhhhhhhh"""bb[a[bb	chr12:56991224-56991466(-)$1	242	6	45	95.1132
J::::===========ssssssssss===========::	chr22:21802033-21802298(+)$1	265	24	63	81.4339
2hhhhhhhh]ggggggg]bb]bb]bb:EEEEE{BB{A{G	chr6:160526847-160527155(+)$1	308	82	121	98.2264
g####ccc[ccc####bb"""a[iiiiiiiii####ddd	chr6:143748091-143748360(-)$1	269	88	127	102.7547
fffff[bb[eeeee[ggggggg[ccc[a[ccc"""ccco	chr16:69733648-69733931(+)$1	283	91	130	98.3207
gg999999999eeeee]hhhhhhhh::::::::a!!bb[	chr10:102308648-102308907(+)$1	259	149	188	90.1132
dd]bb::::::bb[eeeee[ffffffqqqqqqqqfffff	chr17:17942628-17942926(+)$1	298	121	160	76.0566
22ccc]ccc22eeeee::::::::::::::::A{CCC{A	chr19:17397402-17397663(+)$1	261	55	94	102.7547
cc:::::::::::::::dddd[bbqqqqqqqqbb]dddd	chr1:118170371-118170642(+)$1	271	95	134	77.2830

#DB
(.(.....).)))))))))))))).)))).)))....))	chr1:42643307-42643573(-)$1	1	107	146	76.0566
.(((.(.(.(.(.(((.((((((...(.(..(((.....	chr21:44450298-44450555(+)$1	1	73	112	98.6037
.))))....................((.((.(((.....	chr1:161183965-161184240(+)$1	1	90	129	86.8113
)))....)).)))).)))).)).((((....((.(((((	chr9:5127992-5128251(+)$1	1	88	127	102.7547
).).)))))..))))...)))))..........(((((.	chr17:40353363-40353675(-)$1	1	97	136	93.6981
))))))).))..........(((((.(.(.((((((.((	chr5:149233763-149234036(+)$1	1	167	206	90.0188
...))))..).))))))))))).)))).)).))))))).	chr17:79531062-79531324(-)$1	1	176	215	94.2641
)))..)).).)..))))).))))))))......((((((	chr15:77404856-77405130(-)$1	1	83	122	102.7547
)))).))))).).)))).)))..((((((((((((((..	chr21:30716863-30717151(+)$1	1	92	131	99.1698
...)).)).).)).))).))))))).)).)).)).))))	chr12:122459754-122460097(+)$1	1	68	107	98.2264
.....(((((.((((.((((((((((((.((((((((((	chr9:138899044-138899329(-)$1	1	0	39	76.3396
(((.((((....((((.(((((((((((....)))))))	chr3:138671197-138671457(+)$1	1	96	135	94.0754
...))))..).))))))))))).)))).)).))))))).	chr17:79530968-79531238(-)$1	1	90	129	94.2641
)))))..)..)))...))))..)))).))))))(((.((	chr14:60760292-60760580(+)$1	1	96	135	77.6603
(.(((..((...(((.(((((.(((((.(...((.((((	chr6:31619929-31620221(-)$1	1	85	124	102.7547
)..)))..............(((((.(.(.((((((.((	chr5:149233836-149234113(+)$1	1	94	133	90.0188
)))))(((((((....)))))))...............(	chr2:139329446-139329729(+)$1	1	121	160	81.8113
.......................................	chr7:20180288-20180565(-)$1	1	89	128	93.6037
((.(......................).))).))).)).	chr1:206906523-206906825(+)$1	1	88	127	80.9622
((((((.(((((.(((.(((((..(((........))).	chr3:15483615-15483882(+)$1	1	97	136	78.2264
(......(((((.(((.............((((.(((..	chr7:149186166-149186483(-)$1	1	119	158	102.7547
.......(((.((((.(((((((.((.((((.(((((..	chr7:17920704-17920987(-)$1	1	4	43	78.1320
))).)))).).).)...))))...))))..))(((((((	chr12:53806629-53806894(+)$1	1	83	122	98.7924
(((..((.(((((..((.(((..((((......))))..	chr2:175938012-175938244(-)$1	1	19	58	84.1698
)))..))).))).)).)).)))..))))......)))).	chr19:32976186-32976483(+)$1	1	109	148	76.7169
)).))))))))((((..(((((((.(.((..(((((((.	chr12:69666554-69666827(+)$1	1	94	133	81.6226
...........)).))))....)))...)))(((.((((	chr20:46283505-46283792(+)$1	1	87	126	94.7358
(((....(((((((.....(((.((((.(((((.(((..	chr11:77376624-77376948(-)$1	1	105	144	89.1698
..........((((.((.((.((((.((((.(.(((...	chr5:96366252-96366521(+)$1	1	72	111	102.7547
.....((((((((((..............))))))))))	chr11:791048-791335(-)$1	1	96	135	76.7169
..)).)).))).).)))))((((((((((......))))	chr3:5025408-5025667(+)$1	1	107	146	89.5471
.)))).)).))).)).)).))).))))(..((((.((((	chr22:26122799-26123103(+)$1	1	81	120	102.7547
))))...(((((.(((.(((.(((.(((...((((((((	chr6:42048814-42049097(+)$1	1	91	130	86.3396
(((.(.(((....((((.(.((.(.((((..........	chr20:42178261-42178546(+)$1	1	93	132	93.5094
(((((((.(((.(((.(((((...(.((((.(.((....	chr1:67874919-67875197(-)$1	1	83	122	93.6981
.....).).)))))..))))).))).)(((((((.((.(	chr1:110453234-110453540(+)$1	1	105	144	85.4905
(....))))))))..))))).)).............(((	chr1:40840181-40840459(+)$1	1	76	115	89.3584
).((((((.(((((.(((..((((.(((((.(((...((	chr12:123779998-123780291(-)$1	1	96	135	75.9622
))).....))))).)).))))))))..))))..)))).)	chr17:27588209-27588545(-)$1	1	95	134	80.9622
.)).))))))..)))((.(((.((((.(.(..(((...(	chr19:55682519-55682792(-)$1	1	79	118	102.7547
...(.((..((((((((..((((....(((.((.....(	chrX:119572390-119572673(-)$1	1	86	125	102.7547
..((((((((.(((..((((((.((...(((((..((((	chr7:135612939-135613192(-)$1	1	108	147	76.5283
.................(((.(((((.((((((((....	chr1:158580748-158581058(-)$1	1	103	142	94.7358
((((((((((.(((.(((((...((((((((((((((((	chr6:47592339-47592672(+)$1	1	76	115	102.7547
((.....)))).(.((((.((((((((((...((.(.((	chr12:56991224-56991466(-)$1	1	6	45	95.1132
(....(((((((((((..........)))))))))))..	chr22:21802033-21802298(+)$1	1	24	63	81.4339
.)))))))).))))))).)).)).)).(((((.((.(.(	chr6:160526847-160527155(+)$1	1	82	121	98.2264
(....(((.(((....((...(.(((((((((....(((	chr6:143748091-143748360(-)$1	1	88	127	102.7547
(((((.((.(((((.(((((((.(((.(.(((...(((.	chr16:69733648-69733931(+)$1	1	91	130	98.3207
)).........))))).))))))))........(..((.	chr10:102308648-102308907(+)$1	1	149	188	90.1132
)).))......((.(((((.((((((........)))))	chr17:17942628-17942926(+)$1	1	121	160	76.0566
..))).)))..)))))................(.(((.(	chr19:17397402-17397663(+)$1	1	55	94	102.7547
))...............((((.((........)).))))	chr1:118170371-118170642(+)$1	1	95	134	77.2830

#PSSM
u : 0.71	U : 0.09	C : 0.05	G : 0.05	A : 0.05	g : 0.01	
g : 0.79	G : 0.09	C : 0.05	c : 0.03	A : 0.01	
u : 0.79	U : 0.09	G : 0.05	A : 0.01	a : 0.01	c : 0.01	
g : 0.88	G : 0.05	U : 0.03	C : 0.01	
u : 0.88	C : 0.03	c : 0.03	A : 0.01	g : 0.01	
g : 0.94	C : 0.03	u : 0.01	
u : 0.96	c : 0.03	
g : 0.92	c : 0.03	a : 0.01	u : 0.01	
u : 0.92	a : 0.03	g : 0.01	c : 0.01	
g : 0.98	a : 0.01	
u : 0.92	c : 0.03	a : 0.01	g : 0.01	
g : 0.94	c : 0.03	u : 0.01	
u : 0.94	g : 0.01	c : 0.01	a : 0.01	
g : 0.94	a : 0.03	c : 0.01	
u : 0.98	c : 0.01	
g : 0.94	a : 0.05	
u : 0.98	c : 0.01	
g : 0.90	a : 0.03	c : 0.03	u : 0.01	
u : 0.94	c : 0.03	a : 0.01	
g : 0.88	u : 0.05	a : 0.03	c : 0.01	
u : 0.88	c : 0.07	a : 0.01	g : 0.01	
g : 0.92	a : 0.03	c : 0.01	u : 0.01	
u : 0.92	c : 0.05	a : 0.01	
g : 0.96	u : 0.01	c : 0.01	
u : 0.94	c : 0.05	
g : 0.94	a : 0.03	c : 0.01	
u : 0.98	c : 0.01	
g : 0.92	a : 0.03	c : 0.01	u : 0.01	
u : 0.96	c : 0.03	
g : 0.94	a : 0.05	
u : 0.90	c : 0.05	g : 0.03	
g : 0.90	U : 0.03	a : 0.03	c : 0.01	
u : 0.88	c : 0.05	U : 0.01	a : 0.01	C : 0.01	
g : 0.90	a : 0.05	G : 0.01	A : 0.01	
u : 0.88	c : 0.05	A : 0.03	C : 0.01	
g : 0.81	a : 0.09	C : 0.01	A : 0.01	U : 0.01	u : 0.01	G : 0.01	
u : 0.86	U : 0.07	c : 0.03	C : 0.01	
g : 0.90	G : 0.07	U : 0.01	
u : 0.88	U : 0.03	G : 0.03	C : 0.03	

#score	4796.849056603782
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_UTR_m2_run1.nuc.txt

#NT
GGAGGGG	chr19:49606309-49606566(+)$1	257	76	83	17.6000
GGAAGGG	chr8:110346528-110346753(+)$1	225	143	150	13.7999
GGAAGGG	chr6:31802965-31803193(+)$1	228	67	74	13.7999
GGAGUGG	chr17:76200657-76200965(+)$1	308	122	129	14.2000
GGAGGGG	chr15:69071858-69072105(-)$1	247	97	104	17.6000
GAAGGGG	chr17:25635567-25635798(+)$1	231	200	207	13.4000
GGAAGGG	chr8:110346553-110346808(+)$1	255	118	125	13.7999
GGAGGAG	chr6:26285603-26285848(-)$1	245	160	167	14.0000
GGAGGGG	chr17:61909469-61909689(-)$1	220	54	61	17.6000
ggaggug	chr16:31201578-31201815(+)$1	237	40	47	13.9999
GGAGGUG	chr1:203764779-203765030(+)$1	251	187	194	13.9999
GGAGGGG	chr6:7139420-7139688(+)$1	268	26	33	17.6000
GGAGGGG	chr16:29822015-29822253(+)$1	238	4	11	17.6000
GGAGCGG	chr5:179921604-179921863(+)$1	259	31	38	14.4000
GGAGCGG	chr19:2270118-2270390(+)$1	272	207	214	14.4000
GCAGGGG	chr5:179048725-179048956(-)$1	231	36	43	13.4000
GGAGCGG	chr15:91446141-91446421(+)$1	280	36	43	14.4000
GGAGGAG	chr17:46051772-46052129(+)$1	357	233	240	14.0000
GGAGUGG	chr11:122932366-122932611(-)$1	245	39	46	14.2000
GGAGGGG	chr5:179921540-179921804(+)$1	264	59	66	17.6000
GGAGGGG	chr15:69071905-69072177(-)$1	272	169	176	17.6000
GGAGAGG	chr19:49607697-49608001(+)$1	304	251	258	14.0000
GGAGGGG	chr17:61909382-61909669(-)$1	287	34	41	17.6000
GGAGGCG	chr8:110346478-110346728(+)$1	250	14	21	13.7999

#otherMatches

#Struct PSSM
HHHHH::	chr4:41957152-41957416(+)$1	264	115	122	13.4000
DDDDDDD	chr19:49606309-49606566(+)$1	257	76	83	17.6000
bb[dddd	chr8:110346528-110346753(+)$1	225	143	150	13.7999
^^^^^^^	chr6:31802965-31803193(+)$1	228	67	74	13.7999
JJJJJ:f	chr17:76200657-76200965(+)$1	308	122	129	14.2000
6666hhh	chr15:69071858-69072105(-)$1	247	97	104	17.6000
HHHH}DD	chr17:25635567-25635798(+)$1	231	200	207	13.4000
FKKFFFF	chr8:110346553-110346808(+)$1	255	118	125	13.7999
2ffffff	chr6:26285603-26285848(-)$1	245	160	167	14.0000
ggggggg	chr17:61909469-61909689(-)$1	220	54	61	17.6000
[a!!bbm	chr16:31201578-31201815(+)$1	237	40	47	13.9999
cc[hhhh	chr1:203764779-203765030(+)$1	251	187	194	13.9999
2ffffff	chr6:7139420-7139688(+)$1	268	26	33	17.6000
:::::::	chr16:29822015-29822253(+)$1	238	4	11	17.6000
{A:ffff	chr5:179921604-179921863(+)$1	259	31	38	14.4000
mmmdddd	chr19:2270118-2270390(+)$1	272	207	214	14.4000
ccnnnnn	chr5:179048725-179048956(-)$1	231	36	43	13.4000
ooooocc	chr15:91446141-91446421(+)$1	280	36	43	14.4000
BB{BB:c	chr17:46051772-46052129(+)$1	357	233	240	14.0000
HHHHDDD	chr11:122932366-122932611(-)$1	245	39	46	14.2000
"""aooo	chr5:179921540-179921804(+)$1	264	59	66	17.6000
6666hhh	chr15:69071905-69072177(-)$1	272	169	176	17.6000
cc]hhhh	chr19:49607697-49608001(+)$1	304	251	258	14.0000
ggggggg	chr17:61909382-61909669(-)$1	287	34	41	17.6000
hhhhhhc	chr8:110346478-110346728(+)$1	250	14	21	13.7999

#DB
)))))..	chr4:41957152-41957416(+)$1	1	115	122	13.4000
(((((((	chr19:49606309-49606566(+)$1	1	76	83	17.6000
((.((((	chr8:110346528-110346753(+)$1	1	143	150	13.7999
.......	chr6:31802965-31803193(+)$1	1	67	74	13.7999
(((((.(	chr17:76200657-76200965(+)$1	1	122	129	14.2000
....)))	chr15:69071858-69072105(-)$1	1	97	104	17.6000
)))).))	chr17:25635567-25635798(+)$1	1	200	207	13.4000
(..((((	chr8:110346553-110346808(+)$1	1	118	125	13.7999
.))))))	chr6:26285603-26285848(-)$1	1	160	167	14.0000
)))))))	chr17:61909469-61909689(-)$1	1	54	61	17.6000
.(..((.	chr16:31201578-31201815(+)$1	1	40	47	13.9999
((.((((	chr1:203764779-203765030(+)$1	1	187	194	13.9999
.))))))	chr6:7139420-7139688(+)$1	1	26	33	17.6000
.......	chr16:29822015-29822253(+)$1	1	4	11	17.6000
.(.((((	chr5:179921604-179921863(+)$1	1	31	38	14.4000
...))))	chr19:2270118-2270390(+)$1	1	207	214	14.4000
((.....	chr5:179048725-179048956(-)$1	1	36	43	13.4000
.....))	chr15:91446141-91446421(+)$1	1	36	43	14.4000
((.((.(	chr17:46051772-46052129(+)$1	1	233	240	14.0000
(((((((	chr11:122932366-122932611(-)$1	1	39	46	14.2000
...(...	chr5:179921540-179921804(+)$1	1	59	66	17.6000
....)))	chr15:69071905-69072177(-)$1	1	169	176	17.6000
)).))))	chr19:49607697-49608001(+)$1	1	251	258	14.0000
)))))))	chr17:61909382-61909669(-)$1	1	34	41	17.6000
(((((((	chr8:110346478-110346728(+)$1	1	14	21	13.7999

#PSSM
G : 0.96	g : 0.04	
G : 0.84	U : 0.04	A : 0.04	g : 0.04	C : 0.04	
A : 0.96	a : 0.04	
G : 0.84	A : 0.12	g : 0.04	
G : 0.72	C : 0.12	U : 0.08	g : 0.04	A : 0.04	
G : 0.80	A : 0.08	u : 0.04	U : 0.04	C : 0.04	
G : 0.96	g : 0.04	

#score	377.80000000000007
#seq	25
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_UTR_m3_run1.nuc.txt

#NT
UUGUGUU	chr5:10433757-10433994(+)$1	237	156	163	17.4062
UUGUGUA	chr9:86583029-86583280(-)$1	251	66	73	13.8125
UUGUGUA	chr1:25549240-25549489(-)$1	249	135	142	13.8125
UUGUGUU	chr18:19209041-19209293(+)$1	252	110	117	17.4062
UUCUGUU	chr22:36908494-36908734(-)$1	240	55	62	13.7343
GUGUGUU	chr17:45901320-45901571(-)$1	251	95	102	13.6562
UUGUGUG	chr17:41167143-41167389(-)$1	246	28	35	13.8906
UUGUGUU	chr1:17766016-17766265(-)$1	249	63	70	17.4062
UUCUGUU	chr7:825376-825629(+)$1	253	106	113	13.7343
AUGUGUU	chr6:18130499-18130803(-)$1	304	189	196	13.5000
UUGUGUU	chr1:93299001-93299251(+)$1	250	28	35	17.4062
UUGUGUU	chr8:98864165-98864396(+)$1	231	74	81	17.4062
UUCUGUU	chr12:57628228-57628480(+)$1	252	135	142	13.7343
UUGUGUU	chr21:30428576-30428811(-)$1	235	112	119	17.4062
UUGUGUU	chr15:44063533-44063822(+)$1	289	104	111	17.4062
UUGUGUU	chr21:30428642-30428883(-)$1	241	184	191	17.4062
UUGUGUU	chr19:2273244-2273530(+)$1	286	24	31	17.4062
UUGUGUG	chrX:64961470-64961682(+)$1	212	66	73	13.8906
UUGUUUU	chr8:48973849-48974082(+)$1	233	40	47	13.5000
UUGUGUU	chrX:152481718-152481978(-)$1	260	197	204	17.4062
UUGUGUU	chr10:94110915-94111178(+)$1	263	95	102	17.4062
CUGUGUU	chr22:41221670-41221981(-)$1	311	27	34	14.1250
UUGUCUU	chr5:179135199-179135438(+)$1	239	29	36	13.3437
UUGUGUU	chr1:226548827-226549094(-)$1	267	111	118	17.4062
UUGUGUG	chr18:55217323-55217616(-)$1	293	248	255	13.8906
UUGUCUU	chr12:56554309-56554555(+)$1	246	60	67	13.3437
CUGUGUU	chr22:22273941-22274222(-)$1	281	89	96	14.1250
CUGUGUU	chr16:87437382-87437639(+)$1	257	108	115	14.1250
CUGUGUU	chr22:39925057-39925346(-)$1	289	250	257	14.1250
UUGUUUU	chr2:47710057-47710309(+)$1	252	91	98	13.5000
CUGUGUU	chr6:31785460-31785711(+)$1	251	83	90	14.1250
GUGUGUU	chr3:47627340-47627631(-)$1	291	133	140	13.6562
UUGUGUG	chr14:75519947-75520221(-)$1	274	144	151	13.8906
CUGUGUU	chr17:1248163-1248404(-)$1	241	97	104	14.1250
UUGUGUU	chr5:68660577-68660839(-)$1	262	153	160	17.4062
UUGUGUA	chr5:115249217-115249475(+)$1	258	106	113	13.8125
UUGUGUA	chr2:86437713-86437953(+)$1	240	120	127	13.8125
UUGUUUU	chr17:79477094-79477305(-)$1	211	9	16	13.5000
UUGUGUU	chr22:24967923-24968163(+)$1	240	214	221	17.4062
UUGUGUA	chr22:21061964-21062229(-)$1	265	178	185	13.8125
CUGUGUU	chr12:123254438-123254700(+)$1	262	128	135	14.1250
UUGUGUU	chr17:79991713-79991964(+)$1	251	50	57	17.4062
UUGUGUU	chr5:158712803-158713107(+)$1	304	111	118	17.4062
CUGUGUU	chr3:100084102-100084400(-)$1	298	71	78	14.1250
UUGUAUU	chr16:1374900-1375189(+)$1	289	99	106	13.1875
UUGUUUU	chr17:39847740-39847982(+)$1	242	143	150	13.5000
UUGUGUC	chr17:16284361-16284570(+)$1	209	78	85	13.5781
UUGUGUU	chr11:32610038-32610306(+)$1	268	78	85	17.4062
UUCUGUU	chr20:43570934-43571225(-)$1	291	39	46	13.7343
UUGUGUU	chr14:23495185-23495423(-)$1	238	146	153	17.4062
uucuguu	chr3:40503649-40503918(+)$1	269	250	257	13.7343
UUUUGUU	chr14:58701246-58701506(+)$1	260	102	109	13.6562
UUGUUUU	chr1:40538025-40538292(+)$1	267	132	139	13.5000
Uugugug	chr16:67472210-67472479(-)$1	269	80	87	13.8906
GUGUGUU	chr16:66836760-66836987(-)$1	227	97	104	13.6562
UUGUGUC	chr17:16284370-16284577(+)$1	207	69	76	13.5781
UUGUGUG	chr7:56169196-56169449(-)$1	253	103	110	13.8906
UUUUGUU	chr11:4159852-4160118(+)$1	266	105	112	13.6562
CUGUGUU	chr10:103922085-103922356(+)$1	271	102	109	14.1250
UUUUGUU	chr14:58701336-58701586(+)$1	250	12	19	13.6562
UUCUGUU	chr17:45699479-45699726(+)$1	247	131	138	13.7343
UUUUGUU	chr18:54269972-54270239(-)$1	267	100	107	13.6562
UUUUGUU	chrX:22012649-22012870(+)$1	221	86	93	13.6562

#otherMatches

#Struct PSSM
KDDDD::	chr18:43671585-43671863(-)$1	278	33	40	13.3437
iii6666	chr5:10433757-10433994(+)$1	237	156	163	17.4062
CCC{EEE	chr9:86583029-86583280(-)$1	251	66	73	13.8125
gnnnnng	chr1:25549240-25549489(-)$1	249	135	142	13.8125
dd[eeee	chr18:19209041-19209293(+)$1	252	110	117	17.4062
c[eeeee	chr22:36908494-36908734(-)$1	240	55	62	13.7343
%gggggg	chr17:45901320-45901571(-)$1	251	95	102	13.6562
d::::::	chr17:41167143-41167389(-)$1	246	28	35	13.8906
$$ddddm	chr1:17766016-17766265(-)$1	249	63	70	17.4062
ddccc$$	chr7:825376-825629(+)$1	253	106	113	13.7343
FFFFF//	chr6:18130499-18130803(-)$1	304	189	196	13.5000
IIIIIII	chr1:93299001-93299251(+)$1	250	28	35	17.4062
ccc22ff	chr8:98864165-98864396(+)$1	231	74	81	17.4062
nnnffff	chr12:57628228-57628480(+)$1	252	135	142	13.7343
===]ccc	chr21:30428576-30428811(-)$1	235	112	119	17.4062
:EEEEEc	chr15:44063533-44063822(+)$1	289	104	111	17.4062
===]ccc	chr21:30428642-30428883(-)$1	241	184	191	17.4062
ffeeeee	chr19:2273244-2273530(+)$1	286	24	31	17.4062
$$$$bb!	chrX:64961470-64961682(+)$1	212	66	73	13.8906
HHDDDDK	chr8:48973849-48974082(+)$1	233	40	47	13.5000
qqqqqhh	chrX:152481718-152481978(-)$1	260	197	204	17.4062
E:dddd$	chr10:94110915-94111178(+)$1	263	95	102	17.4062
GGGGBBL	chr22:41221670-41221981(-)$1	311	27	34	14.1250
:FFFFFF	chr5:179135199-179135438(+)$1	239	29	36	13.3437
xxxxxxx	chr1:226548827-226549094(-)$1	267	111	118	17.4062
==333ee	chr18:55217323-55217616(-)$1	293	248	255	13.8906
&&&&&&e	chr12:56554309-56554555(+)$1	246	60	67	13.3437
:bb[ddd	chr22:22273941-22274222(-)$1	281	89	96	14.1250
"""gggg	chr16:87437382-87437639(+)$1	257	108	115	14.1250
GGGGDDD	chr22:39925057-39925346(-)$1	289	250	257	14.1250
eeeee22	chr2:47710057-47710309(+)$1	252	91	98	13.5000
""bb[ff	chr6:31785460-31785711(+)$1	251	83	90	14.1250
c[cccmm	chr3:47627340-47627631(-)$1	291	133	140	13.6562
iii:fff	chr14:75519947-75520221(-)$1	274	144	151	13.8906
bhhhhhh	chr17:1248163-1248404(-)$1	241	97	104	14.1250
eeee"""	chr5:68660577-68660839(-)$1	262	153	160	17.4062
ggg::hh	chr5:115249217-115249475(+)$1	258	106	113	13.8125
ooooiii	chr2:86437713-86437953(+)$1	240	120	127	13.8125
::bbqqq	chr17:79477094-79477305(-)$1	211	9	16	13.5000
BB}EEEE	chr22:24967923-24968163(+)$1	240	214	221	17.4062
hhhhhhh	chr22:21061964-21062229(-)$1	265	178	185	13.8125
CCbb!!f	chr12:123254438-123254700(+)$1	262	128	135	14.1250
oooobb]	chr17:79991713-79991964(+)$1	251	50	57	17.4062
%%%%ccc	chr5:158712803-158713107(+)$1	304	111	118	17.4062
b]eeeee	chr3:100084102-100084400(-)$1	298	71	78	14.1250
uuuuuuu	chr16:1374900-1375189(+)$1	289	99	106	13.1875
:ccc!!d	chr17:39847740-39847982(+)$1	242	143	150	13.5000
dddd!!a	chr17:16284361-16284570(+)$1	209	78	85	13.5781
qqccc]c	chr11:32610038-32610306(+)$1	268	78	85	17.4062
KKEEEEE	chr20:43570934-43571225(-)$1	291	39	46	13.7343
gggggg7	chr14:23495185-23495423(-)$1	238	146	153	17.4062
[ddddnn	chr3:40503649-40503918(+)$1	269	250	257	13.7343
::::ddd	chr14:58701246-58701506(+)$1	260	102	109	13.6562
geeeee[	chr1:40538025-40538292(+)$1	267	132	139	13.5000
nnddddE	chr16:67472210-67472479(-)$1	269	80	87	13.8906
b]eeeee	chr16:66836760-66836987(-)$1	227	97	104	13.6562
dddd!!a	chr17:16284370-16284577(+)$1	207	69	76	13.5781
dddd]cc	chr7:56169196-56169449(-)$1	253	103	110	13.8906
iiiiiii	chr11:4159852-4160118(+)$1	266	105	112	13.6562
gggg]cc	chr10:103922085-103922356(+)$1	271	102	109	14.1250
::::ddd	chr14:58701336-58701586(+)$1	250	12	19	13.6562
JJJJJJJ	chr17:45699479-45699726(+)$1	247	131	138	13.7343
qffffff	chr18:54269972-54270239(-)$1	267	100	107	13.6562
vvvvvvv	chrX:22012649-22012870(+)$1	221	86	93	13.6562

#DB
.((((..	chr18:43671585-43671863(-)$1	1	33	40	13.3437
)))....	chr5:10433757-10433994(+)$1	1	156	163	17.4062
(((.(((	chr9:86583029-86583280(-)$1	1	66	73	13.8125
(.....)	chr1:25549240-25549489(-)$1	1	135	142	13.8125
((.((((	chr18:19209041-19209293(+)$1	1	110	117	17.4062
(.(((((	chr22:36908494-36908734(-)$1	1	55	62	13.7343
.((((((	chr17:45901320-45901571(-)$1	1	95	102	13.6562
)......	chr17:41167143-41167389(-)$1	1	28	35	13.8906
..((((.	chr1:17766016-17766265(-)$1	1	63	70	17.4062
(((((..	chr7:825376-825629(+)$1	1	106	113	13.7343
)))))..	chr6:18130499-18130803(-)$1	1	189	196	13.5000
(((((((	chr1:93299001-93299251(+)$1	1	28	35	17.4062
)))..))	chr8:98864165-98864396(+)$1	1	74	81	17.4062
...))))	chr12:57628228-57628480(+)$1	1	135	142	13.7343
))).)))	chr21:30428576-30428811(-)$1	1	112	119	17.4062
.((((((	chr15:44063533-44063822(+)$1	1	104	111	17.4062
))).)))	chr21:30428642-30428883(-)$1	1	184	191	17.4062
(((((((	chr19:2273244-2273530(+)$1	1	24	31	17.4062
....((.	chrX:64961470-64961682(+)$1	1	66	73	13.8906
((((((.	chr8:48973849-48974082(+)$1	1	40	47	13.5000
.....))	chrX:152481718-152481978(-)$1	1	197	204	17.4062
(.((((.	chr10:94110915-94111178(+)$1	1	95	102	17.4062
((((((.	chr22:41221670-41221981(-)$1	1	27	34	14.1250
.((((((	chr5:179135199-179135438(+)$1	1	29	36	13.3437
.......	chr1:226548827-226549094(-)$1	1	111	118	17.4062
))...))	chr18:55217323-55217616(-)$1	1	248	255	13.8906
......(	chr12:56554309-56554555(+)$1	1	60	67	13.3437
.((.(((	chr22:22273941-22274222(-)$1	1	89	96	14.1250
...((((	chr16:87437382-87437639(+)$1	1	108	115	14.1250
)))))))	chr22:39925057-39925346(-)$1	1	250	257	14.1250
)))))..	chr2:47710057-47710309(+)$1	1	91	98	13.5000
..((.((	chr6:31785460-31785711(+)$1	1	83	90	14.1250
(.(((..	chr3:47627340-47627631(-)$1	1	133	140	13.6562
))).(((	chr14:75519947-75520221(-)$1	1	144	151	13.8906
)))))))	chr17:1248163-1248404(-)$1	1	97	104	14.1250
((((...	chr5:68660577-68660839(-)$1	1	153	160	17.4062
)))..((	chr5:115249217-115249475(+)$1	1	106	113	13.8125
....)))	chr2:86437713-86437953(+)$1	1	120	127	13.8125
..((...	chr17:79477094-79477305(-)$1	1	9	16	13.5000
)).))))	chr22:24967923-24968163(+)$1	1	214	221	17.4062
)))))))	chr22:21061964-21062229(-)$1	1	178	185	13.8125
((((..(	chr12:123254438-123254700(+)$1	1	128	135	14.1250
....)).	chr17:79991713-79991964(+)$1	1	50	57	17.4062
....(((	chr5:158712803-158713107(+)$1	1	111	118	17.4062
).)))))	chr3:100084102-100084400(-)$1	1	71	78	14.1250
.......	chr16:1374900-1375189(+)$1	1	99	106	13.1875
.(((..(	chr17:39847740-39847982(+)$1	1	143	150	13.5000
((((..(	chr17:16284361-16284570(+)$1	1	78	85	13.5781
..))).)	chr11:32610038-32610306(+)$1	1	78	85	17.4062
..(((((	chr20:43570934-43571225(-)$1	1	39	46	13.7343
)))))).	chr14:23495185-23495423(-)$1	1	146	153	17.4062
.((((..	chr3:40503649-40503918(+)$1	1	250	257	13.7343
....(((	chr14:58701246-58701506(+)$1	1	102	109	13.6562
)(((((.	chr1:40538025-40538292(+)$1	1	132	139	13.5000
..)))))	chr16:67472210-67472479(-)$1	1	80	87	13.8906
).)))))	chr16:66836760-66836987(-)$1	1	97	104	13.6562
((((..(	chr17:16284370-16284577(+)$1	1	69	76	13.5781
)))).))	chr7:56169196-56169449(-)$1	1	103	110	13.8906
(((((((	chr11:4159852-4160118(+)$1	1	105	112	13.6562
)))).))	chr10:103922085-103922356(+)$1	1	102	109	14.1250
....(((	chr14:58701336-58701586(+)$1	1	12	19	13.6562
)))))))	chr17:45699479-45699726(+)$1	1	131	138	13.7343
.))))))	chr18:54269972-54270239(-)$1	1	100	107	13.6562
.......	chrX:22012649-22012870(+)$1	1	86	93	13.6562

#PSSM
U : 0.78	C : 0.14	G : 0.04	A : 0.01	u : 0.01	
U : 0.96	u : 0.03	
G : 0.81	C : 0.07	U : 0.07	c : 0.01	g : 0.01	
U : 0.96	u : 0.03	
G : 0.82	U : 0.07	C : 0.04	g : 0.03	A : 0.01	
U : 0.96	u : 0.03	
U : 0.78	A : 0.07	G : 0.07	C : 0.03	u : 0.01	g : 0.01	

#score	945.875
#seq	64
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_UTR_m3_run2.nuc.txt

#NT
uuuuauuuuuauuuuuuuucuuu	chr1:32636744-32636976(+)$1	232	82	105	41.0212
Cuuuuuuuuuauuuuuuuuuuga	chr4:166263423-166263637(+)$1	214	84	107	37.9361
UUUUCUUUUUCUUUUUCUUUUGU	chr11:47489675-47489925(-)$1	250	140	163	42.8297
UUUUGGUUUUUGUUUUAGUUUUU	chr19:1272681-1272897(+)$1	216	60	83	34.1063
uuuuguuuuuguuuuuguuuuuU	chr19:15347875-15348146(-)$1	271	155	178	43.3617
guuuuguuuuguuauguuuuuuu	chr2:188330017-188330276(-)$1	259	63	86	32.5106
CAUUGGuuuucuuuuucuuuuuu	chr2:29023009-29023257(+)$1	248	55	78	34.7446
Uuuuuuuuuucuuuuuuuuucuu	chr17:74731367-74731584(-)$1	217	87	110	42.2978
GUCUGUUUUUGAUUUUCUUUUUU	chr1:204522196-204522455(+)$1	259	119	142	33.4680
uuuuuuuuuuuuuuuucuauuuu	chr3:152881388-152881617(+)$1	229	37	60	40.9148
uuuuuuauuucuuuauuuuuuuu	chr8:26268722-26268978(+)$1	256	82	105	37.7234
CUUGUGAUUUUUUUUUCUUUUUU	chr2:113420842-113421059(+)$1	217	82	105	31.7659
guuuuguuuuguuauguuuuuuu	chr2:188330076-188330297(-)$1	221	84	107	32.5106
uggccUUUUUUUUUUUUUUUUUU	chr19:11256982-11257249(-)$1	267	85	108	34.7446
CAAGCCuuuuuuuuuuuuuuuuu	chr14:102231815-102232027(+)$1	212	84	107	28.8936
uuuucuuuuuuuuuuuucuuucu	chr19:12833191-12833478(-)$1	287	53	76	39.3191
UUUUUUUUUUCUUUUGUUUUGGU	chr22:21304584-21304811(+)$1	227	32	55	36.9787
aauuuuuuuuuguauuuuuuugu	chrX:150574974-150575236(+)$1	262	38	61	30.3829
Gguuuuuuuuuguuuuguuuugu	chr22:21304623-21304846(+)$1	223	53	76	32.6170
uuuuuUUUUUCUUUCACUUAUAU	chr6:33269245-33269498(-)$1	253	94	117	29.1063
Cuuuuuuuuuauuuuuuuuuuga	chr4:166263437-166263696(+)$1	259	70	93	37.9361
UUUUUGUUUUGUUUUUGUUCUGC	chr3:133307584-133307812(+)$1	228	95	118	32.0851
gccCAuuuuuuuuuuuuuuuuga	chr19:34891857-34892119(+)$1	262	70	93	26.1276
uuuuaauuuuaauuuuuuuuuuu	chr22:22841642-22841893(-)$1	251	78	101	38.0425
uuuucuuuuuguuuuucuuucuu	chr1:24999060-24999292(+)$1	232	68	91	40.1702
cuuucuuuuucuuucuuuucuuu	chr12:123779027-123779288(-)$1	261	52	75	34.5319
uuuucuuuuuuucuuuccuuuuu	chr11:47490095-47490359(-)$1	264	89	112	36.1276
UUUUGGUUUUUGUUUUAGUUUUU	chr19:1272697-1272957(+)$1	260	44	67	34.1063
UUUUGGUUUUGUUUUUAUCUUGU	chr14:81686746-81687065(-)$1	319	139	162	34.8510
uucgcuuuuuuuuuuuuuuuuga	chr1:167758046-167758271(+)$1	225	65	88	34.1063
UACUCuuuuuauuuuuauuuuuu	chr3:113528817-113529043(+)$1	226	42	65	36.8723
uuuuguuuugguuuuugguuuuu	chr19:2233577-2233852(-)$1	275	95	118	34.6382
UUUUAACuuuuuuuauuuuuugg	chr6:143510080-143510359(+)$1	279	88	111	28.2553
UACUCuuuuuauuuuuauuuuuu	chr3:113528796-113529017(+)$1	221	63	86	36.8723
UUUUGGUUUUGAUUUUUUUUUUU	chr1:203770862-203771156(+)$1	294	71	94	39.1063
uuuuacuuuuuuuuuuuuuuggu	chr1:47682743-47682999(-)$1	256	90	113	37.1914
uuuuauuauuauuauuauuuuug	chr1:21070030-21070244(-)$1	214	69	92	30.4893
uucgcuuuuuuuuuuuuuuuuga	chr1:167758026-167758246(+)$1	220	85	108	34.1063
uuuuccuuuucuuuuuuuuuugu	chr7:151833467-151833739(-)$1	272	77	100	41.1276
uuuuauuuuuauuuuuuuucuuu	chr1:32636776-32637000(+)$1	224	50	73	41.0212
uuucuuuuuucuuuuucuuuuuu	chr1:222906333-222906581(+)$1	248	55	78	41.1276
uuuuguuuuuguuuuuguuuuuU	chr13:107196026-107196278(-)$1	252	6	29	43.3617
uuuacuuuuacuuuuuuuuuuuu	chr19:18390711-18390967(-)$1	256	79	102	37.1914
UUUUUUUUUUCUUUUGUUUUGGU	chr22:21304611-21304823(+)$1	212	5	28	36.9787
UUUUUUUUUUAAUUUUCUUUGUU	chr17:30808741-30809042(+)$1	301	87	110	37.0851
UUUUUUUUUUUUUUGUAAUUUUU	chr12:76441726-76441980(-)$1	254	85	108	36.7659

#otherMatches

#Struct PSSM
dd:::::::::::::::::::::	chr7:148700599-148700861(-)$1	262	80	103	41.2340
^^^^^^^^ggggggg22hhhhhh	chr1:32636744-32636976(+)$1	232	82	105	41.0212
::::::::::::::::::::fff	chr4:166263423-166263637(+)$1	214	84	107	37.9361
:::::::::::::::::::::::	chr11:47489675-47489925(-)$1	250	140	163	42.8297
6666ccc333ccc::::::::DD	chr19:1272681-1272897(+)$1	216	60	83	34.1063
^^^^^^^^^^^^^^^^^^^^^^^	chr19:15347875-15348146(-)$1	271	155	178	43.3617
:::::::::::::::::::::::	chr2:188330017-188330276(-)$1	259	63	86	32.5106
ooooccc::::::::::::::::	chr2:29023009-29023257(+)$1	248	55	78	34.7446
:::::::::::::::::::::::	chr17:74731367-74731584(-)$1	217	87	110	42.2978
ccdddd::::::::::::::hhh	chr1:204522196-204522455(+)$1	259	119	142	33.4680
zzzzzzzzzzzzz==========	chr3:152881388-152881617(+)$1	229	37	60	40.9148
^^^^^^^^^^^^^^^^^^^^^^^	chr8:26268722-26268978(+)$1	256	82	105	37.7234
A{EEEEE::::::::::::::::	chr2:113420842-113421059(+)$1	217	82	105	31.7659
:::::::::::::::::::::::	chr2:188330076-188330297(-)$1	221	84	107	32.5106
gggg+++++++++++++++++++	chr19:11256982-11257249(-)$1	267	85	108	34.7446
hhhhhhh]ccc::::::::::ee	chr14:102231815-102232027(+)$1	212	84	107	28.8936
nnnna::::::::::::::::::	chr19:12833191-12833478(-)$1	287	53	76	39.3191
d^^^^^^^^^^^^^^^^^^^ddd	chr22:21304584-21304811(+)$1	227	32	55	36.9787
:::::::::::::::::::::::	chrX:150574974-150575236(+)$1	262	38	61	30.3829
ee:::::::::::::::::::::	chr22:21304623-21304846(+)$1	223	53	76	32.6170
:::::::::::::::::::::::	chr6:33269245-33269498(-)$1	253	94	117	29.1063
:::::::::::::::::::::ff	chr4:166263437-166263696(+)$1	259	70	93	37.9361
ee!!cccwwwwwwwwwwwwwwcc	chr3:133307584-133307812(+)$1	228	95	118	32.0851
cc]ccc:::::::::::::::::	chr19:34891857-34892119(+)$1	262	70	93	26.1276
oooccc22eeeee]=========	chr22:22841642-22841893(-)$1	251	78	101	38.0425
KEEEEE:::::::::::::::::	chr1:24999060-24999292(+)$1	232	68	91	40.1702
:::::::::::::::::::::::	chr12:123779027-123779288(-)$1	261	52	75	34.5319
:::::::::::::iiiiiiiii#	chr11:47490095-47490359(-)$1	264	89	112	36.1276
HH{EEEEEDDDDFFFFFF:::::	chr19:1272697-1272957(+)$1	260	44	67	34.1063
::::::::::IIIIIIIII{BB:	chr14:81686746-81687065(-)$1	319	139	162	34.8510
EKKCCC:::::::::::::::dd	chr1:167758046-167758271(+)$1	225	65	88	34.1063
:::::::::bbmmmmbb::::::	chr3:113528817-113529043(+)$1	226	42	65	36.8723
=======:::::::cccdddd!!	chr19:2233577-2233852(-)$1	275	95	118	34.6382
dd]gggggggiiiiiiiiiccch	chr6:143510080-143510359(+)$1	279	88	111	28.2553
:::::::::::::::::::::::	chr3:113528796-113529017(+)$1	221	63	86	36.8723
gggggg!!dddd!!dddd[dddd	chr1:203770862-203771156(+)$1	294	71	94	39.1063
::::::::::::::::::::ggg	chr1:47682743-47682999(-)$1	256	90	113	37.1914
ff:::::::::::::::::EEEE	chr1:21070030-21070244(-)$1	214	69	92	30.4893
ff:::::::::::::::::ffff	chr1:167758026-167758246(+)$1	220	85	108	34.1063
>>>>bb22dddd55555iiiiii	chr7:151833467-151833739(-)$1	272	77	100	41.1276
^^^^^^^^ggggggg22iiiiii	chr1:32636776-32637000(+)$1	224	50	73	41.0212
:::::::::::::::::::::::	chr1:222906333-222906581(+)$1	248	55	78	41.1276
::::::::::::::::::::eee	chr13:107196026-107196278(-)$1	252	6	29	43.3617
:::::::::::::==========	chr19:18390711-18390967(-)$1	256	79	102	37.1914
D:::::::::::::::::::iii	chr22:21304611-21304823(+)$1	212	5	28	36.9787
dd]eeeee333bb]ccc]eeeee	chr17:30808741-30809042(+)$1	301	87	110	37.0851
dd::::::::::::::::::::D	chr12:76441726-76441980(-)$1	254	85	108	36.7659

#DB
)).....................	chr7:148700599-148700861(-)$1	1	80	103	41.2340
........)))))))..))))))	chr1:32636744-32636976(+)$1	1	82	105	41.0212
....................(((	chr4:166263423-166263637(+)$1	1	84	107	37.9361
.......................	chr11:47489675-47489925(-)$1	1	140	163	42.8297
....)))...)))........((	chr19:1272681-1272897(+)$1	1	60	83	34.1063
.......................	chr19:15347875-15348146(-)$1	1	155	178	43.3617
.......................	chr2:188330017-188330276(-)$1	1	63	86	32.5106
....)))................	chr2:29023009-29023257(+)$1	1	55	78	34.7446
.......................	chr17:74731367-74731584(-)$1	1	87	110	42.2978
))))))..............(((	chr1:204522196-204522455(+)$1	1	119	142	33.4680
.............))))))))))	chr3:152881388-152881617(+)$1	1	37	60	40.9148
.......................	chr8:26268722-26268978(+)$1	1	82	105	37.7234
(.(((((................	chr2:113420842-113421059(+)$1	1	82	105	31.7659
.......................	chr2:188330076-188330297(-)$1	1	84	107	32.5106
((((...................	chr19:11256982-11257249(-)$1	1	85	108	34.7446
))))))).)))..........((	chr14:102231815-102232027(+)$1	1	84	107	28.8936
....)..................	chr19:12833191-12833478(-)$1	1	53	76	39.3191
(...................)))	chr22:21304584-21304811(+)$1	1	32	55	36.9787
.......................	chrX:150574974-150575236(+)$1	1	38	61	30.3829
)).....................	chr22:21304623-21304846(+)$1	1	53	76	32.6170
.......................	chr6:33269245-33269498(-)$1	1	94	117	29.1063
.....................((	chr4:166263437-166263696(+)$1	1	70	93	37.9361
((..(((..............))	chr3:133307584-133307812(+)$1	1	95	118	32.0851
)).))).................	chr19:34891857-34892119(+)$1	1	70	93	26.1276
...)))..))))).)))))))))	chr22:22841642-22841893(-)$1	1	78	101	38.0425
.(((((.................	chr1:24999060-24999292(+)$1	1	68	91	40.1702
.......................	chr12:123779027-123779288(-)$1	1	52	75	34.5319
.............(((((((((.	chr11:47490095-47490359(-)$1	1	89	112	36.1276
((.(((((((((((((((.....	chr19:1272697-1272957(+)$1	1	44	67	34.1063
..........(((((((((.((.	chr14:81686746-81687065(-)$1	1	139	162	34.8510
(..(((...............((	chr1:167758046-167758271(+)$1	1	65	88	34.1063
.........((....))......	chr3:113528817-113529043(+)$1	1	42	65	36.8723
))))))).......(((((((..	chr19:2233577-2233852(-)$1	1	95	118	34.6382
)).)))))))))))))))))))(	chr6:143510080-143510359(+)$1	1	88	111	28.2553
.......................	chr3:113528796-113529017(+)$1	1	63	86	36.8723
((((((..((((..((((.((((	chr1:203770862-203771156(+)$1	1	71	94	39.1063
....................(((	chr1:47682743-47682999(-)$1	1	90	113	37.1914
)).................((((	chr1:21070030-21070244(-)$1	1	69	92	30.4893
)).................((((	chr1:167758026-167758246(+)$1	1	85	108	34.1063
....))..)))).....))))))	chr7:151833467-151833739(-)$1	1	77	100	41.1276
........)))))))..))))))	chr1:32636776-32637000(+)$1	1	50	73	41.0212
.......................	chr1:222906333-222906581(+)$1	1	55	78	41.1276
....................(((	chr13:107196026-107196278(-)$1	1	6	29	43.3617
.............((((((((((	chr19:18390711-18390967(-)$1	1	79	102	37.1914
(...................(((	chr22:21304611-21304823(+)$1	1	5	28	36.9787
)).)))))...)).))).)))))	chr17:30808741-30809042(+)$1	1	87	110	37.0851
))....................)	chr12:76441726-76441980(-)$1	1	85	108	36.7659

#PSSM
u : 0.44	U : 0.29	C : 0.10	g : 0.06	G : 0.04	a : 0.02	c : 0.02	
u : 0.55	U : 0.27	A : 0.08	g : 0.04	a : 0.02	c : 0.02	
u : 0.55	U : 0.27	C : 0.06	c : 0.06	g : 0.02	A : 0.02	
u : 0.51	U : 0.31	G : 0.04	c : 0.04	g : 0.04	C : 0.02	a : 0.02	
u : 0.25	c : 0.19	G : 0.12	U : 0.12	a : 0.10	C : 0.08	g : 0.06	A : 0.04	
u : 0.53	U : 0.17	G : 0.14	g : 0.04	c : 0.04	C : 0.02	a : 0.02	A : 0.02	
u : 0.65	U : 0.27	a : 0.02	A : 0.02	C : 0.02	
u : 0.68	U : 0.29	a : 0.02	
u : 0.70	U : 0.29	
u : 0.65	U : 0.29	g : 0.02	a : 0.02	
u : 0.25	a : 0.17	c : 0.14	g : 0.12	U : 0.10	C : 0.08	G : 0.08	A : 0.02	
u : 0.63	U : 0.19	A : 0.06	G : 0.04	g : 0.04	a : 0.02	
u : 0.68	U : 0.29	c : 0.02	
u : 0.61	U : 0.29	a : 0.08	
u : 0.63	U : 0.25	a : 0.04	C : 0.02	c : 0.02	G : 0.02	
u : 0.63	U : 0.23	g : 0.04	G : 0.04	a : 0.02	A : 0.02	
u : 0.42	C : 0.10	c : 0.10	a : 0.08	A : 0.08	g : 0.08	U : 0.08	G : 0.02	
u : 0.63	U : 0.23	G : 0.04	c : 0.04	g : 0.02	A : 0.02	
u : 0.68	U : 0.27	a : 0.02	C : 0.02	
u : 0.63	U : 0.25	c : 0.06	A : 0.02	C : 0.02	
u : 0.63	U : 0.23	G : 0.06	c : 0.04	g : 0.02	
u : 0.46	g : 0.21	U : 0.17	G : 0.10	c : 0.02	A : 0.02	
u : 0.51	U : 0.31	a : 0.10	g : 0.04	C : 0.02	

#score	1698.7446808510647
#seq	47
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_UTR_m3_run2.nuc.txt

#NT
AAA	chr5:179132596-179132863(+)$1	267	4	7	8.9999
aaa	chr11:62608993-62609220(-)$1	227	31	34	8.9999
AAA	chr17:27050661-27050866(+)$1	205	14	17	8.9999
AAA	chr4:74279199-74279432(+)$1	233	4	7	8.9999
AAA	chr4:74279232-74279447(+)$1	215	13	16	8.9999
AAA	chr11:93466553-93466760(-)$1	207	46	49	8.9999
AAA	chr11:93466531-93466736(-)$1	205	22	25	8.9999
AAA	chr2:216230127-216230341(-)$1	214	48	51	8.9999
AAA	chr11:122929525-122929742(-)$1	217	19	22	8.9999
AAA	chr11:93466536-93466742(-)$1	206	28	31	8.9999
AAA	chr4:74272245-74272447(+)$1	202	58	61	8.9999
AAA	chr15:25227104-25227355(+)$1	251	5	8	8.9999
aaa	chr17:8076708-8076912(-)$1	204	80	83	8.9999
aaa	chr4:74283726-74283948(+)$1	222	25	28	8.9999
AAA	chr18:47017932-47018141(-)$1	209	5	8	8.9999
AAA	chr2:216230150-216230366(-)$1	216	73	76	8.9999
AAA	chr6:31804788-31805011(+)$1	223	113	116	8.9999
AAA	chr11:62609111-62609355(-)$1	244	68	71	8.9999
AAA	chr6:31802976-31803178(+)$1	202	27	30	8.9999
AAA	chr17:27047506-27047720(+)$1	214	74	77	8.9999
AAA	chr4:74279036-74279257(+)$1	221	33	36	8.9999
AAA	chr4:74283198-74283424(+)$1	226	24	27	8.9999
aaa	chr11:62609045-62609248(-)$1	203	59	62	8.9999
AAA	chr18:47017941-47018154(-)$1	213	18	21	8.9999
AAA	chr19:5140264-5140509(+)$1	245	125	128	8.9999
AAA	chr18:47017954-47018165(-)$1	211	29	32	8.9999
AAA	chr4:74277627-74277850(+)$1	223	10	13	8.9999
AAA	chr17:27047485-27047706(+)$1	221	95	98	8.9999
aaa	chr17:8076724-8076929(-)$1	205	97	100	8.9999
AAA	chr11:93464054-93464258(-)$1	204	49	52	8.9999
AAA	chr2:216232602-216232811(-)$1	209	10	13	8.9999
AAA	chr3:195789624-195789903(-)$1	279	69	72	8.9999
AAA	chr19:5140309-5140588(+)$1	279	80	83	8.9999
AAA	chr11:122929963-122930166(-)$1	203	12	15	8.9999
aaa	chr17:8076714-8076916(-)$1	202	84	87	8.9999
AAA	chr5:180670222-180670425(-)$1	203	89	92	8.9999
aaa	chr15:44057563-44057815(+)$1	252	3	6	8.9999
AAA	chr4:74283261-74283480(+)$1	219	8	11	8.9999
AAA	chr19:49993125-49993359(+)$1	234	38	41	8.9999
aaa	chr11:62609020-62609227(-)$1	207	38	41	8.9999
AAA	chr6:31804811-31805021(+)$1	210	90	93	8.9999
AAA	chr11:75111343-75111571(+)$1	228	39	42	8.9999
aaa	chr17:8076772-8077000(-)$1	228	168	171	8.9999
AAA	chr3:133473379-133473612(+)$1	233	120	123	8.9999
AAA	chr4:74279074-74279282(+)$1	208	9	12	8.9999
AAA	chr5:180670238-180670479(-)$1	241	38	41	8.9999
AAA	chr2:216232510-216232747(-)$1	237	104	107	8.9999
AAA	chr4:74280673-74280901(+)$1	228	49	52	8.9999
AAA	chr11:75111418-75111625(+)$1	207	11	14	8.9999
AAA	chr6:31802993-31803196(+)$1	203	10	13	8.9999
AAA	chr12:9243905-9244124(-)$1	219	46	49	8.9999
AAA	chr15:83424621-83424923(+)$1	302	35	38	8.9999
AAA	chr4:74280719-74280980(+)$1	261	3	6	8.9999
AAA	chr3:133467237-133467499(+)$1	262	41	44	8.9999
aaa	chr17:8076740-8076946(-)$1	206	114	117	8.9999
aaa	chr17:8076721-8076924(-)$1	203	92	95	8.9999
aaa	chr17:8076692-8076898(-)$1	206	66	69	8.9999
AAA	chr2:216232547-216232788(-)$1	241	145	148	8.9999
AAA	chr6:31508793-31509034(-)$1	241	18	21	8.9999
aaa	chr17:8076705-8076908(-)$1	203	76	79	8.9999
AAA	chr17:7481292-7481499(+)$1	207	25	28	8.9999
aaa	chr17:8076668-8076890(-)$1	222	58	61	8.9999
AAA	chr17:7481277-7481492(+)$1	215	40	43	8.9999
aaa	chr11:62609027-62609233(-)$1	206	44	47	8.9999
AAA	chr8:8750934-8751150(-)$1	216	77	80	8.9999
AAA	chr8:33370944-33371154(+)$1	210	1	4	8.9999
AAA	chr8:33370927-33371134(+)$1	207	18	21	8.9999
AAA	chr12:9245960-9246179(-)$1	219	74	77	8.9999
AAA	chr19:51302223-51302450(-)$1	227	56	59	8.9999
AAA	chr8:33370934-33371141(+)$1	207	11	14	8.9999
AAA	chr11:62609096-62609311(-)$1	215	24	27	8.9999
AAA	chr15:25227038-25227282(+)$1	244	5	8	8.9999
AAA	chr4:74277738-74277942(+)$1	204	5	8	8.9999
AAA	chr11:75111404-75111618(+)$1	214	25	28	8.9999
AAA	chr4:74272247-74272457(+)$1	210	56	59	8.9999
aaa	chr17:8076729-8076934(-)$1	205	102	105	8.9999
AAA	chr6:31804762-31804988(+)$1	226	139	142	8.9999
aaa	chr17:8076716-8076921(-)$1	205	89	92	8.9999
AAA	chr5:85916259-85916486(+)$1	227	1	4	8.9999
AAA	chr11:75111388-75111595(+)$1	207	41	44	8.9999
aaa	chr11:62609040-62609245(-)$1	205	56	59	8.9999
AAA	chr11:93466568-93466783(-)$1	215	2	5	8.9999
AAA	chr15:25227082-25227299(+)$1	217	8	11	8.9999
aaa	chr4:74283705-74283920(+)$1	215	46	49	8.9999
AAA	chr11:93463593-93463811(-)$1	218	9	12	8.9999
aaa	chr4:152024897-152025126(+)$1	229	0	3	8.9999
aaa	chr17:8076734-8076940(-)$1	206	108	111	8.9999
aaa	chr11:62609048-62609265(-)$1	217	76	79	8.9999
aaa	chr17:8076712-8076914(-)$1	202	82	85	8.9999
aaa	chr11:62609033-62609240(-)$1	207	51	54	8.9999
AAA	chr2:216230166-216230390(-)$1	224	97	100	8.9999
AAA	chr11:62609082-62609296(-)$1	214	9	12	8.9999
AAA	chr2:216232611-216232826(-)$1	215	25	28	8.9999
AAA	chr17:7481273-7481476(+)$1	203	44	47	8.9999
AAA	chr11:93464070-93464283(-)$1	213	74	77	8.9999

#otherMatches

#Struct PSSM
B{E	chr6:31802964-31803176(+)$1	212	4	7	8.9999
HHH	chr5:179132596-179132863(+)$1	267	4	7	8.9999
:::	chr11:62608993-62609220(-)$1	227	31	34	8.9999
:::	chr17:27050661-27050866(+)$1	205	14	17	8.9999
:::	chr4:74279199-74279432(+)$1	233	4	7	8.9999
DDD	chr4:74279232-74279447(+)$1	215	13	16	8.9999
c33	chr11:93466553-93466760(-)$1	207	46	49	8.9999
D::	chr11:93466531-93466736(-)$1	205	22	25	8.9999
d!!	chr2:216230127-216230341(-)$1	214	48	51	8.9999
:::	chr11:122929525-122929742(-)$1	217	19	22	8.9999
D::	chr11:93466536-93466742(-)$1	206	28	31	8.9999
::c	chr4:74272245-74272447(+)$1	202	58	61	8.9999
:::	chr15:25227104-25227355(+)$1	251	5	8	8.9999
b[d	chr17:8076708-8076912(-)$1	204	80	83	8.9999
hhh	chr4:74283726-74283948(+)$1	222	25	28	8.9999
::e	chr18:47017932-47018141(-)$1	209	5	8	8.9999
"""	chr2:216230150-216230366(-)$1	216	73	76	8.9999
d99	chr6:31804788-31805011(+)$1	223	113	116	8.9999
qqq	chr11:62609111-62609355(-)$1	244	68	71	8.9999
MMM	chr6:31802976-31803178(+)$1	202	27	30	8.9999
+++	chr17:27047506-27047720(+)$1	214	74	77	8.9999
MHH	chr4:74279036-74279257(+)$1	221	33	36	8.9999
:::	chr4:74283198-74283424(+)$1	226	24	27	8.9999
:::	chr11:62609045-62609248(-)$1	203	59	62	8.9999
::e	chr18:47017941-47018154(-)$1	213	18	21	8.9999
sss	chr19:5140264-5140509(+)$1	245	125	128	8.9999
::e	chr18:47017954-47018165(-)$1	211	29	32	8.9999
dd:	chr4:74277627-74277850(+)$1	223	10	13	8.9999
+++	chr17:27047485-27047706(+)$1	221	95	98	8.9999
b[d	chr17:8076724-8076929(-)$1	205	97	100	8.9999
e::	chr11:93464054-93464258(-)$1	204	49	52	8.9999
ooo	chr2:216232602-216232811(-)$1	209	10	13	8.9999
ggg	chr3:195789624-195789903(-)$1	279	69	72	8.9999
sss	chr19:5140309-5140588(+)$1	279	80	83	8.9999
:::	chr11:122929963-122930166(-)$1	203	12	15	8.9999
b[d	chr17:8076714-8076916(-)$1	202	84	87	8.9999
c]b	chr5:180670222-180670425(-)$1	203	89	92	8.9999
b[e	chr15:44057563-44057815(+)$1	252	3	6	8.9999
::D	chr4:74283261-74283480(+)$1	219	8	11	8.9999
LLL	chr19:49993125-49993359(+)$1	234	38	41	8.9999
:::	chr11:62609020-62609227(-)$1	207	38	41	8.9999
d99	chr6:31804811-31805021(+)$1	210	90	93	8.9999
LLL	chr11:75111343-75111571(+)$1	228	39	42	8.9999
b[d	chr17:8076772-8077000(-)$1	228	168	171	8.9999
::d	chr3:133473379-133473612(+)$1	233	120	123	8.9999
{DD	chr4:74279074-74279282(+)$1	208	9	12	8.9999
vvv	chr5:180670238-180670479(-)$1	241	38	41	8.9999
::d	chr2:216232510-216232747(-)$1	237	104	107	8.9999
NFF	chr4:74280673-74280901(+)$1	228	49	52	8.9999
#hh	chr11:75111418-75111625(+)$1	207	11	14	8.9999
MMM	chr6:31802993-31803196(+)$1	203	10	13	8.9999
::d	chr12:9243905-9244124(-)$1	219	46	49	8.9999
3ee	chr15:83424621-83424923(+)$1	302	35	38	8.9999
:::	chr4:74280719-74280980(+)$1	261	3	6	8.9999
:::	chr3:133467237-133467499(+)$1	262	41	44	8.9999
b[d	chr17:8076740-8076946(-)$1	206	114	117	8.9999
b[d	chr17:8076721-8076924(-)$1	203	92	95	8.9999
b[d	chr17:8076692-8076898(-)$1	206	66	69	8.9999
::d	chr2:216232547-216232788(-)$1	241	145	148	8.9999
nnn	chr6:31508793-31509034(-)$1	241	18	21	8.9999
b[d	chr17:8076705-8076908(-)$1	203	76	79	8.9999
III	chr17:7481292-7481499(+)$1	207	25	28	8.9999
b[d	chr17:8076668-8076890(-)$1	222	58	61	8.9999
III	chr17:7481277-7481492(+)$1	215	40	43	8.9999
iii	chr11:62609027-62609233(-)$1	206	44	47	8.9999
555	chr8:8750934-8751150(-)$1	216	77	80	8.9999
:::	chr8:33370944-33371154(+)$1	210	1	4	8.9999
EEE	chr8:33370927-33371134(+)$1	207	18	21	8.9999
mmm	chr12:9245960-9246179(-)$1	219	74	77	8.9999
mmm	chr19:51302223-51302450(-)$1	227	56	59	8.9999
EEE	chr8:33370934-33371141(+)$1	207	11	14	8.9999
qqq	chr11:62609096-62609311(-)$1	215	24	27	8.9999
GGG	chr15:25227038-25227282(+)$1	244	5	8	8.9999
:::	chr4:74277738-74277942(+)$1	204	5	8	8.9999
#hh	chr11:75111404-75111618(+)$1	214	25	28	8.9999
::c	chr4:74272247-74272457(+)$1	210	56	59	8.9999
b[d	chr17:8076729-8076934(-)$1	205	102	105	8.9999
d99	chr6:31804762-31804988(+)$1	226	139	142	8.9999
b[d	chr17:8076716-8076921(-)$1	205	89	92	8.9999
:::	chr5:85916259-85916486(+)$1	227	1	4	8.9999
=hh	chr11:75111388-75111595(+)$1	207	41	44	8.9999
:::	chr11:62609040-62609245(-)$1	205	56	59	8.9999
:::	chr11:93466568-93466783(-)$1	215	2	5	8.9999
dd[	chr15:25227082-25227299(+)$1	217	8	11	8.9999
hhh	chr4:74283705-74283920(+)$1	215	46	49	8.9999
%%%	chr11:93463593-93463811(-)$1	218	9	12	8.9999
:::	chr4:152024897-152025126(+)$1	229	0	3	8.9999
b[d	chr17:8076734-8076940(-)$1	206	108	111	8.9999
:::	chr11:62609048-62609265(-)$1	217	76	79	8.9999
b[d	chr17:8076712-8076914(-)$1	202	82	85	8.9999
:::	chr11:62609033-62609240(-)$1	207	51	54	8.9999
:::	chr2:216230166-216230390(-)$1	224	97	100	8.9999
::f	chr11:62609082-62609296(-)$1	214	9	12	8.9999
ggg	chr2:216232611-216232826(-)$1	215	25	28	8.9999
HHH	chr17:7481273-7481476(+)$1	203	44	47	8.9999
:::	chr11:93464070-93464283(-)$1	213	74	77	8.9999

#DB
(.(	chr6:31802964-31803176(+)$1	1	4	7	8.9999
(((	chr5:179132596-179132863(+)$1	1	4	7	8.9999
...	chr11:62608993-62609220(-)$1	1	31	34	8.9999
...	chr17:27050661-27050866(+)$1	1	14	17	8.9999
...	chr4:74279199-74279432(+)$1	1	4	7	8.9999
(((	chr4:74279232-74279447(+)$1	1	13	16	8.9999
)..	chr11:93466553-93466760(-)$1	1	46	49	8.9999
(..	chr11:93466531-93466736(-)$1	1	22	25	8.9999
(..	chr2:216230127-216230341(-)$1	1	48	51	8.9999
...	chr11:122929525-122929742(-)$1	1	19	22	8.9999
(..	chr11:93466536-93466742(-)$1	1	28	31	8.9999
..(	chr4:74272245-74272447(+)$1	1	58	61	8.9999
...	chr15:25227104-25227355(+)$1	1	5	8	8.9999
(.(	chr17:8076708-8076912(-)$1	1	80	83	8.9999
(((	chr4:74283726-74283948(+)$1	1	25	28	8.9999
..(	chr18:47017932-47018141(-)$1	1	5	8	8.9999
...	chr2:216230150-216230366(-)$1	1	73	76	8.9999
)..	chr6:31804788-31805011(+)$1	1	113	116	8.9999
...	chr11:62609111-62609355(-)$1	1	68	71	8.9999
...	chr6:31802976-31803178(+)$1	1	27	30	8.9999
...	chr17:27047506-27047720(+)$1	1	74	77	8.9999
.((	chr4:74279036-74279257(+)$1	1	33	36	8.9999
...	chr4:74283198-74283424(+)$1	1	24	27	8.9999
...	chr11:62609045-62609248(-)$1	1	59	62	8.9999
..(	chr18:47017941-47018154(-)$1	1	18	21	8.9999
...	chr19:5140264-5140509(+)$1	1	125	128	8.9999
..(	chr18:47017954-47018165(-)$1	1	29	32	8.9999
)).	chr4:74277627-74277850(+)$1	1	10	13	8.9999
...	chr17:27047485-27047706(+)$1	1	95	98	8.9999
(.(	chr17:8076724-8076929(-)$1	1	97	100	8.9999
)..	chr11:93464054-93464258(-)$1	1	49	52	8.9999
...	chr2:216232602-216232811(-)$1	1	10	13	8.9999
(((	chr3:195789624-195789903(-)$1	1	69	72	8.9999
...	chr19:5140309-5140588(+)$1	1	80	83	8.9999
...	chr11:122929963-122930166(-)$1	1	12	15	8.9999
(.(	chr17:8076714-8076916(-)$1	1	84	87	8.9999
).)	chr5:180670222-180670425(-)$1	1	89	92	8.9999
(.(	chr15:44057563-44057815(+)$1	1	3	6	8.9999
..(	chr4:74283261-74283480(+)$1	1	8	11	8.9999
...	chr19:49993125-49993359(+)$1	1	38	41	8.9999
...	chr11:62609020-62609227(-)$1	1	38	41	8.9999
)..	chr6:31804811-31805021(+)$1	1	90	93	8.9999
...	chr11:75111343-75111571(+)$1	1	39	42	8.9999
(.(	chr17:8076772-8077000(-)$1	1	168	171	8.9999
..(	chr3:133473379-133473612(+)$1	1	120	123	8.9999
.((	chr4:74279074-74279282(+)$1	1	9	12	8.9999
...	chr5:180670238-180670479(-)$1	1	38	41	8.9999
..(	chr2:216232510-216232747(-)$1	1	104	107	8.9999
.((	chr4:74280673-74280901(+)$1	1	49	52	8.9999
.((	chr11:75111418-75111625(+)$1	1	11	14	8.9999
...	chr6:31802993-31803196(+)$1	1	10	13	8.9999
..(	chr12:9243905-9244124(-)$1	1	46	49	8.9999
.))	chr15:83424621-83424923(+)$1	1	35	38	8.9999
...	chr4:74280719-74280980(+)$1	1	3	6	8.9999
...	chr3:133467237-133467499(+)$1	1	41	44	8.9999
(.(	chr17:8076740-8076946(-)$1	1	114	117	8.9999
(.(	chr17:8076721-8076924(-)$1	1	92	95	8.9999
(.(	chr17:8076692-8076898(-)$1	1	66	69	8.9999
..(	chr2:216232547-216232788(-)$1	1	145	148	8.9999
...	chr6:31508793-31509034(-)$1	1	18	21	8.9999
(.(	chr17:8076705-8076908(-)$1	1	76	79	8.9999
(((	chr17:7481292-7481499(+)$1	1	25	28	8.9999
(.(	chr17:8076668-8076890(-)$1	1	58	61	8.9999
(((	chr17:7481277-7481492(+)$1	1	40	43	8.9999
)))	chr11:62609027-62609233(-)$1	1	44	47	8.9999
...	chr8:8750934-8751150(-)$1	1	77	80	8.9999
...	chr8:33370944-33371154(+)$1	1	1	4	8.9999
(((	chr8:33370927-33371134(+)$1	1	18	21	8.9999
...	chr12:9245960-9246179(-)$1	1	74	77	8.9999
...	chr19:51302223-51302450(-)$1	1	56	59	8.9999
(((	chr8:33370934-33371141(+)$1	1	11	14	8.9999
...	chr11:62609096-62609311(-)$1	1	24	27	8.9999
(((	chr15:25227038-25227282(+)$1	1	5	8	8.9999
...	chr4:74277738-74277942(+)$1	1	5	8	8.9999
.((	chr11:75111404-75111618(+)$1	1	25	28	8.9999
..(	chr4:74272247-74272457(+)$1	1	56	59	8.9999
(.(	chr17:8076729-8076934(-)$1	1	102	105	8.9999
)..	chr6:31804762-31804988(+)$1	1	139	142	8.9999
(.(	chr17:8076716-8076921(-)$1	1	89	92	8.9999
...	chr5:85916259-85916486(+)$1	1	1	4	8.9999
)((	chr11:75111388-75111595(+)$1	1	41	44	8.9999
...	chr11:62609040-62609245(-)$1	1	56	59	8.9999
...	chr11:93466568-93466783(-)$1	1	2	5	8.9999
((.	chr15:25227082-25227299(+)$1	1	8	11	8.9999
(((	chr4:74283705-74283920(+)$1	1	46	49	8.9999
...	chr11:93463593-93463811(-)$1	1	9	12	8.9999
...	chr4:152024897-152025126(+)$1	1	0	3	8.9999
(.(	chr17:8076734-8076940(-)$1	1	108	111	8.9999
...	chr11:62609048-62609265(-)$1	1	76	79	8.9999
(.(	chr17:8076712-8076914(-)$1	1	82	85	8.9999
...	chr11:62609033-62609240(-)$1	1	51	54	8.9999
...	chr2:216230166-216230390(-)$1	1	97	100	8.9999
..(	chr11:62609082-62609296(-)$1	1	9	12	8.9999
)))	chr2:216232611-216232826(-)$1	1	25	28	8.9999
(((	chr17:7481273-7481476(+)$1	1	44	47	8.9999
...	chr11:93464070-93464283(-)$1	1	74	77	8.9999

#PSSM
A : 0.74	a : 0.24	
A : 0.74	a : 0.24	
A : 0.74	a : 0.24	

#score	863.9999999999999
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_CDS_m3_run2.nuc.txt

#NT
CUGG	chr12:132625889-132626159(-)$1	270	60	64	11.9999
CUGG	chr2:11755315-11755560(+)$1	245	88	92	11.9999
cugG	chr10:94451999-94452257(+)$1	258	14	18	11.9999
CUGG	chr15:45361098-45361395(+)$1	297	83	87	11.9999
CUGG	chr16:72137924-72138189(+)$1	265	22	26	11.9999
CUGG	chr16:87452315-87452586(-)$1	271	82	86	11.9999
CUGG	chr11:70260651-70260929(+)$1	278	122	126	11.9999
CUGG	chr4:1817247-1817510(-)$1	263	60	64	11.9999
CUGG	chr1:205498551-205498825(+)$1	274	42	46	11.9999
CUGG	chr5:1334231-1334521(-)$1	290	85	89	11.9999
CUGG	chr5:1323761-1324005(-)$1	244	185	189	11.9999
CUGG	chr1:1249200-1249440(-)$1	240	16	20	11.9999
CUGG	chr6:30690302-30690529(+)$1	227	13	17	11.9999
CUGG	chr7:5568680-5568894(-)$1	214	124	128	11.9999
CUGG	chr16:1824240-1824483(+)$1	243	68	72	11.9999
CUGG	chr16:1502607-1502884(-)$1	277	30	34	11.9999
CUGG	chr19:56196898-56197154(+)$1	256	22	26	11.9999
CUGG	chr12:100904792-100905057(+)$1	265	87	91	11.9999
CUGG	chr9:130710465-130710750(-)$1	285	5	9	11.9999
CUGG	chr16:242826-243049(-)$1	223	137	141	11.9999
CUGG	chr19:39116623-39116884(+)$1	261	89	93	11.9999
CUGG	chr9:36191151-36191378(+)$1	227	64	68	11.9999
CUGG	chr6:31658173-31658439(-)$1	266	82	86	11.9999
CUGG	chr6:160212023-160212375(+)$1	352	61	65	11.9999
CUGG	chr9:127693484-127693728(-)$1	244	131	135	11.9999
CUGG	chr17:73282210-73282513(-)$1	303	74	78	11.9999
CUGG	chr13:30109819-30110063(-)$1	244	61	65	11.9999
CUGG	chr17:38289259-38289502(+)$1	243	38	42	11.9999
CUGG	chr2:61486692-61486952(-)$1	260	74	78	11.9999
CUGG	chr12:56742140-56742432(-)$1	292	38	42	11.9999
CUGG	chr1:5926259-5926538(-)$1	279	9	13	11.9999
CUGG	chr3:119153461-119153726(-)$1	265	31	35	11.9999
cugg	chr2:27884889-27885146(-)$1	257	41	45	11.9999
CUGG	chr19:623316-623558(-)$1	242	36	40	11.9999
CUGG	chr22:35726363-35726624(+)$1	261	15	19	11.9999
CUGG	chr14:35872883-35873125(-)$1	242	64	68	11.9999
CUGG	chr14:102514258-102514507(+)$1	249	13	17	11.9999
CUGG	chr7:142962055-142962329(+)$1	274	8	12	11.9999
CUGG	chr19:2137581-2137826(-)$1	245	46	50	11.9999
CUGG	chr17:4847794-4848082(+)$1	288	7	11	11.9999
CUGG	chr19:17355603-17355870(-)$1	267	164	168	11.9999
CUGG	chr17:7495870-7496120(-)$1	250	69	73	11.9999
CUGG	chr19:7975216-7975481(+)$1	265	172	176	11.9999
CUGG	chr3:38178262-38178483(-)$1	221	10	14	11.9999
CUGG	chr2:240005689-240005960(-)$1	271	106	110	11.9999
CUGG	chr11:71944458-71944674(+)$1	216	140	144	11.9999
CUGG	chr1:3700412-3700677(-)$1	265	41	45	11.9999
CUGG	chr1:19430437-19430691(-)$1	254	38	42	11.9999
CUGG	chr2:241536144-241536394(+)$1	250	126	130	11.9999
CUGG	chr11:67196426-67196726(+)$1	300	57	61	11.9999
CUGG	chr2:86297001-86297251(-)$1	250	51	55	11.9999
CUGG	chr16:28167237-28167537(-)$1	300	164	168	11.9999
CUGG	chr20:34055275-34055520(+)$1	245	19	23	11.9999
CUGG	chr1:227920960-227921241(-)$1	281	44	48	11.9999
CUGG	chr3:172096102-172096375(+)$1	273	55	59	11.9999
CUGG	chr12:104682685-104682938(+)$1	253	37	41	11.9999
CUGG	chr6:30546169-30546422(+)$1	253	232	236	11.9999
CUGG	chr8:41468171-41468470(+)$1	299	50	54	11.9999
CUGG	chr19:2431372-2431649(-)$1	277	129	133	11.9999
CUGG	chr16:721057-721282(+)$1	225	77	81	11.9999
CUGG	chr4:2648444-2648711(+)$1	267	73	77	11.9999
CUGG	chr7:45142821-45143053(-)$1	232	65	69	11.9999
CUGG	chr19:17531301-17531581(+)$1	280	105	109	11.9999
CUGG	chr22:21983329-21983657(-)$1	328	6	10	11.9999
CUGG	chr3:193854717-193854980(+)$1	263	50	54	11.9999
CUGG	chrX:48846954-48847200(-)$1	246	144	148	11.9999
CUGG	chr2:27454989-27455242(+)$1	253	130	134	11.9999
CUGG	chr2:36744534-36744843(+)$1	309	199	203	11.9999
CUGG	chr5:126869358-126869620(+)$1	262	67	71	11.9999
CUGG	chr6:24666766-24667059(-)$1	293	107	111	11.9999
CUGG	chr17:722535-722788(-)$1	253	42	46	11.9999
CUGG	chr19:14037962-14038231(+)$1	269	50	54	11.9999
CUGG	chr4:100002986-100003261(-)$1	275	88	92	11.9999
CUGG	chr12:16035646-16035929(+)$1	283	26	30	11.9999
CUGG	chr19:55743311-55743571(-)$1	260	111	115	11.9999
CUGG	chr16:9000171-9000383(-)$1	212	32	36	11.9999
cugg	chr2:128615446-128615716(-)$1	270	13	17	11.9999
CUGG	chr11:64898800-64899055(-)$1	255	68	72	11.9999
CUGG	chr8:145153853-145154111(-)$1	258	140	144	11.9999
CUGG	chr19:35505185-35505431(+)$1	246	27	31	11.9999
CUGG	chr4:877673-877944(-)$1	271	86	90	11.9999
CUGG	chr5:1088282-1088539(-)$1	257	226	230	11.9999
CUGG	chr13:111806202-111806479(+)$1	277	130	134	11.9999
CUGG	chr15:75651378-75651664(-)$1	286	12	16	11.9999
CUGG	chr12:133625277-133625535(+)$1	258	208	212	11.9999
CUGG	chr1:154962630-154962907(+)$1	277	71	75	11.9999
CUGG	chr3:62263222-62263504(+)$1	282	68	72	11.9999
CUGG	chr3:15137332-15137619(-)$1	287	1	5	11.9999
CUGG	chr22:39709940-39710221(-)$1	281	107	111	11.9999

#otherMatches

#Struct PSSM
eee[	chr22:36697435-36697683(-)$1	248	32	36	11.9999
eeee	chr12:132625889-132626159(-)$1	270	60	64	11.9999
[hhh	chr2:11755315-11755560(+)$1	245	88	92	11.9999
IIII	chr10:94451999-94452257(+)$1	258	14	18	11.9999
EEEE	chr15:45361098-45361395(+)$1	297	83	87	11.9999
GGGG	chr16:72137924-72138189(+)$1	265	22	26	11.9999
##bb	chr16:87452315-87452586(-)$1	271	82	86	11.9999
4eee	chr11:70260651-70260929(+)$1	278	122	126	11.9999
cccm	chr4:1817247-1817510(-)$1	263	60	64	11.9999
33cc	chr1:205498551-205498825(+)$1	274	42	46	11.9999
EEEE	chr5:1334231-1334521(-)$1	290	85	89	11.9999
YYCC	chr5:1323761-1324005(-)$1	244	185	189	11.9999
::FF	chr1:1249200-1249440(-)$1	240	16	20	11.9999
Cddd	chr6:30690302-30690529(+)$1	227	13	17	11.9999
ooff	chr7:5568680-5568894(-)$1	214	124	128	11.9999
==[d	chr16:1824240-1824483(+)$1	243	68	72	11.9999
[ddd	chr16:1502607-1502884(-)$1	277	30	34	11.9999
EEEE	chr19:56196898-56197154(+)$1	256	22	26	11.9999
ddd2	chr12:100904792-100905057(+)$1	265	87	91	11.9999
GGGG	chr9:130710465-130710750(-)$1	285	5	9	11.9999
a!!c	chr16:242826-243049(-)$1	223	137	141	11.9999
bb]c	chr19:39116623-39116884(+)$1	261	89	93	11.9999
gggg	chr9:36191151-36191378(+)$1	227	64	68	11.9999
ffff	chr6:31658173-31658439(-)$1	266	82	86	11.9999
eeee	chr6:160212023-160212375(+)$1	352	61	65	11.9999
ffff	chr9:127693484-127693728(-)$1	244	131	135	11.9999
ccc4	chr17:73282210-73282513(-)$1	303	74	78	11.9999
====	chr13:30109819-30110063(-)$1	244	61	65	11.9999
cccn	chr17:38289259-38289502(+)$1	243	38	42	11.9999
ffff	chr2:61486692-61486952(-)$1	260	74	78	11.9999
[ccc	chr12:56742140-56742432(-)$1	292	38	42	11.9999
oooo	chr1:5926259-5926538(-)$1	279	9	13	11.9999
g"""	chr3:119153461-119153726(-)$1	265	31	35	11.9999
CCCC	chr2:27884889-27885146(-)$1	257	41	45	11.9999
ggg5	chr19:623316-623558(-)$1	242	36	40	11.9999
HHFF	chr22:35726363-35726624(+)$1	261	15	19	11.9999
CCCg	chr14:35872883-35873125(-)$1	242	64	68	11.9999
:iii	chr14:102514258-102514507(+)$1	249	13	17	11.9999
[ddd	chr7:142962055-142962329(+)$1	274	8	12	11.9999
eee:	chr19:2137581-2137826(-)$1	245	46	50	11.9999
GGGG	chr17:4847794-4848082(+)$1	288	7	11	11.9999
nnee	chr19:17355603-17355870(-)$1	267	164	168	11.9999
fffq	chr17:7495870-7496120(-)$1	250	69	73	11.9999
ssff	chr19:7975216-7975481(+)$1	265	172	176	11.9999
G:::	chr3:38178262-38178483(-)$1	221	10	14	11.9999
dddd	chr2:240005689-240005960(-)$1	271	106	110	11.9999
3fff	chr11:71944458-71944674(+)$1	216	140	144	11.9999
eee!	chr1:3700412-3700677(-)$1	265	41	45	11.9999
dd!!	chr1:19430437-19430691(-)$1	254	38	42	11.9999
JJBB	chr2:241536144-241536394(+)$1	250	126	130	11.9999
E{CC	chr11:67196426-67196726(+)$1	300	57	61	11.9999
EEEE	chr2:86297001-86297251(-)$1	250	51	55	11.9999
ee::	chr16:28167237-28167537(-)$1	300	164	168	11.9999
ccrr	chr20:34055275-34055520(+)$1	245	19	23	11.9999
ff[b	chr1:227920960-227921241(-)$1	281	44	48	11.9999
dddf	chr3:172096102-172096375(+)$1	273	55	59	11.9999
dddd	chr12:104682685-104682938(+)$1	253	37	41	11.9999
qqqb	chr6:30546169-30546422(+)$1	253	232	236	11.9999
bppp	chr8:41468171-41468470(+)$1	299	50	54	11.9999
IIII	chr19:2431372-2431649(-)$1	277	129	133	11.9999
eee]	chr16:721057-721282(+)$1	225	77	81	11.9999
B{BB	chr4:2648444-2648711(+)$1	267	73	77	11.9999
tttt	chr7:45142821-45143053(-)$1	232	65	69	11.9999
rrff	chr19:17531301-17531581(+)$1	280	105	109	11.9999
dlll	chr22:21983329-21983657(-)$1	328	6	10	11.9999
beee	chr3:193854717-193854980(+)$1	263	50	54	11.9999
E}CC	chrX:48846954-48847200(-)$1	246	144	148	11.9999
YCCC	chr2:27454989-27455242(+)$1	253	130	134	11.9999
YEEE	chr2:36744534-36744843(+)$1	309	199	203	11.9999
!ddd	chr5:126869358-126869620(+)$1	262	67	71	11.9999
h"""	chr6:24666766-24667059(-)$1	293	107	111	11.9999
99bb	chr17:722535-722788(-)$1	253	42	46	11.9999
FFFF	chr19:14037962-14038231(+)$1	269	50	54	11.9999
gggg	chr4:100002986-100003261(-)$1	275	88	92	11.9999
CKKG	chr12:16035646-16035929(+)$1	283	26	30	11.9999
gggg	chr19:55743311-55743571(-)$1	260	111	115	11.9999
ee:f	chr16:9000171-9000383(-)$1	212	32	36	11.9999
eeem	chr2:128615446-128615716(-)$1	270	13	17	11.9999
:ccc	chr11:64898800-64899055(-)$1	255	68	72	11.9999
====	chr8:145153853-145154111(-)$1	258	140	144	11.9999
CCKK	chr19:35505185-35505431(+)$1	246	27	31	11.9999
eeee	chr4:877673-877944(-)$1	271	86	90	11.9999
HHHH	chr5:1088282-1088539(-)$1	257	226	230	11.9999
===a	chr13:111806202-111806479(+)$1	277	130	134	11.9999
dddn	chr15:75651378-75651664(-)$1	286	12	16	11.9999
HHHH	chr12:133625277-133625535(+)$1	258	208	212	11.9999
FFFF	chr1:154962630-154962907(+)$1	277	71	75	11.9999
gggg	chr3:62263222-62263504(+)$1	282	68	72	11.9999
DDDD	chr3:15137332-15137619(-)$1	287	1	5	11.9999
!bbn	chr22:39709940-39710221(-)$1	281	107	111	11.9999

#DB
(((.	chr22:36697435-36697683(-)$1	1	32	36	11.9999
((((	chr12:132625889-132626159(-)$1	1	60	64	11.9999
.(((	chr2:11755315-11755560(+)$1	1	88	92	11.9999
((((	chr10:94451999-94452257(+)$1	1	14	18	11.9999
((((	chr15:45361098-45361395(+)$1	1	83	87	11.9999
((((	chr16:72137924-72138189(+)$1	1	22	26	11.9999
..((	chr16:87452315-87452586(-)$1	1	82	86	11.9999
.)))	chr11:70260651-70260929(+)$1	1	122	126	11.9999
(((.	chr4:1817247-1817510(-)$1	1	60	64	11.9999
..))	chr1:205498551-205498825(+)$1	1	42	46	11.9999
((((	chr5:1334231-1334521(-)$1	1	85	89	11.9999
..))	chr5:1323761-1324005(-)$1	1	185	189	11.9999
..((	chr1:1249200-1249440(-)$1	1	16	20	11.9999
((((	chr6:30690302-30690529(+)$1	1	13	17	11.9999
..))	chr7:5568680-5568894(-)$1	1	124	128	11.9999
((.(	chr16:1824240-1824483(+)$1	1	68	72	11.9999
.(((	chr16:1502607-1502884(-)$1	1	30	34	11.9999
((((	chr19:56196898-56197154(+)$1	1	22	26	11.9999
))).	chr12:100904792-100905057(+)$1	1	87	91	11.9999
((((	chr9:130710465-130710750(-)$1	1	5	9	11.9999
(..(	chr16:242826-243049(-)$1	1	137	141	11.9999
)).)	chr19:39116623-39116884(+)$1	1	89	93	11.9999
((((	chr9:36191151-36191378(+)$1	1	64	68	11.9999
))))	chr6:31658173-31658439(-)$1	1	82	86	11.9999
((((	chr6:160212023-160212375(+)$1	1	61	65	11.9999
))))	chr9:127693484-127693728(-)$1	1	131	135	11.9999
))).	chr17:73282210-73282513(-)$1	1	74	78	11.9999
((((	chr13:30109819-30110063(-)$1	1	61	65	11.9999
(((.	chr17:38289259-38289502(+)$1	1	38	42	11.9999
((((	chr2:61486692-61486952(-)$1	1	74	78	11.9999
.(((	chr12:56742140-56742432(-)$1	1	38	42	11.9999
....	chr1:5926259-5926538(-)$1	1	9	13	11.9999
(...	chr3:119153461-119153726(-)$1	1	31	35	11.9999
((((	chr2:27884889-27885146(-)$1	1	41	45	11.9999
))).	chr19:623316-623558(-)$1	1	36	40	11.9999
((((	chr22:35726363-35726624(+)$1	1	15	19	11.9999
((((	chr14:35872883-35873125(-)$1	1	64	68	11.9999
.(((	chr14:102514258-102514507(+)$1	1	13	17	11.9999
.(((	chr7:142962055-142962329(+)$1	1	8	12	11.9999
))).	chr19:2137581-2137826(-)$1	1	46	50	11.9999
((((	chr17:4847794-4848082(+)$1	1	7	11	11.9999
..))	chr19:17355603-17355870(-)$1	1	164	168	11.9999
(((.	chr17:7495870-7496120(-)$1	1	69	73	11.9999
..))	chr19:7975216-7975481(+)$1	1	172	176	11.9999
(...	chr3:38178262-38178483(-)$1	1	10	14	11.9999
((((	chr2:240005689-240005960(-)$1	1	106	110	11.9999
.)))	chr11:71944458-71944674(+)$1	1	140	144	11.9999
(((.	chr1:3700412-3700677(-)$1	1	41	45	11.9999
((..	chr1:19430437-19430691(-)$1	1	38	42	11.9999
))))	chr2:241536144-241536394(+)$1	1	126	130	11.9999
(.((	chr11:67196426-67196726(+)$1	1	57	61	11.9999
((((	chr2:86297001-86297251(-)$1	1	51	55	11.9999
))..	chr16:28167237-28167537(-)$1	1	164	168	11.9999
((..	chr20:34055275-34055520(+)$1	1	19	23	11.9999
((.(	chr1:227920960-227921241(-)$1	1	44	48	11.9999
)))(	chr3:172096102-172096375(+)$1	1	55	59	11.9999
((((	chr12:104682685-104682938(+)$1	1	37	41	11.9999
...)	chr6:30546169-30546422(+)$1	1	232	236	11.9999
(...	chr8:41468171-41468470(+)$1	1	50	54	11.9999
((((	chr19:2431372-2431649(-)$1	1	129	133	11.9999
))).	chr16:721057-721282(+)$1	1	77	81	11.9999
(.((	chr4:2648444-2648711(+)$1	1	73	77	11.9999
....	chr7:45142821-45143053(-)$1	1	65	69	11.9999
..))	chr19:17531301-17531581(+)$1	1	105	109	11.9999
(...	chr22:21983329-21983657(-)$1	1	6	10	11.9999
))))	chr3:193854717-193854980(+)$1	1	50	54	11.9999
).))	chrX:48846954-48847200(-)$1	1	144	148	11.9999
.)))	chr2:27454989-27455242(+)$1	1	130	134	11.9999
.)))	chr2:36744534-36744843(+)$1	1	199	203	11.9999
.(((	chr5:126869358-126869620(+)$1	1	67	71	11.9999
(...	chr6:24666766-24667059(-)$1	1	107	111	11.9999
..))	chr17:722535-722788(-)$1	1	42	46	11.9999
((((	chr19:14037962-14038231(+)$1	1	50	54	11.9999
))))	chr4:100002986-100003261(-)$1	1	88	92	11.9999
(..(	chr12:16035646-16035929(+)$1	1	26	30	11.9999
((((	chr19:55743311-55743571(-)$1	1	111	115	11.9999
)).(	chr16:9000171-9000383(-)$1	1	32	36	11.9999
(((.	chr2:128615446-128615716(-)$1	1	13	17	11.9999
.(((	chr11:64898800-64899055(-)$1	1	68	72	11.9999
))))	chr8:145153853-145154111(-)$1	1	140	144	11.9999
((..	chr19:35505185-35505431(+)$1	1	27	31	11.9999
))))	chr4:877673-877944(-)$1	1	86	90	11.9999
))))	chr5:1088282-1088539(-)$1	1	226	230	11.9999
))))	chr13:111806202-111806479(+)$1	1	130	134	11.9999
(((.	chr15:75651378-75651664(-)$1	1	12	16	11.9999
))))	chr12:133625277-133625535(+)$1	1	208	212	11.9999
((((	chr1:154962630-154962907(+)$1	1	71	75	11.9999
((((	chr3:62263222-62263504(+)$1	1	68	72	11.9999
((((	chr3:15137332-15137619(-)$1	1	1	5	11.9999
.((.	chr22:39709940-39710221(-)$1	1	107	111	11.9999

#PSSM
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	
G : 0.97	g : 0.02	

#score	1079.9999999999995
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_UTR_m3_run1.nuc.txt

#NT
UACUAAC	chr1:109427889-109428205(+)$1	316	155	162	17.9166
UACUAAC	chr1:160183236-160183548(+)$1	312	140	147	17.9166
UACUAAA	chr22:39414530-39414880(+)$1	350	156	163	15.5000
AACUAAC	chr6:127610057-127610343(-)$1	286	119	126	14.7500
UACUAAU	chr6:157739430-157739739(-)$1	309	92	99	15.5833
CACUAAC	chr1:205685177-205685449(-)$1	272	137	144	14.5000
UACUAAA	chr10:93622933-93623245(+)$1	312	68	75	15.5000
GACUAAC	chr6:91260448-91260753(-)$1	305	148	155	14.8333
UACUAAC	chr7:116594838-116595153(+)$1	315	126	133	17.9166
AACUAAC	chr17:64804221-64804508(+)$1	287	143	150	14.7500
UACUAAC	chr3:178954091-178954348(+)$1	257	133	140	17.9166
GACUAAC	chr5:148884429-148884698(-)$1	269	107	114	14.8333
UACUAAC	chr2:85547883-85548195(-)$1	312	126	133	17.9166
CACUAAC	chr8:144989272-144989557(-)$1	285	111	118	14.5000
UACUAAC	chr3:183888905-183889247(+)$1	342	147	154	17.9166
AACUAAC	chr6:88304054-88304390(+)$1	336	124	131	14.7500
UACUAAA	chr11:118267370-118267641(+)$1	271	103	110	15.5000
uacuaau	chr1:117645209-117645484(+)$1	275	128	135	15.5833
UACUAAC	chr1:241793615-241793951(-)$1	336	141	148	17.9166
UACUAAC	chr5:148884498-148884857(-)$1	359	4	11	17.9166
UACUAAU	chr1:78482651-78482957(+)$1	306	125	132	15.5833
GACUAAC	chr3:96336719-96336997(-)$1	278	78	85	14.8333
uacuaau	chr5:87497987-87498251(-)$1	264	49	56	15.5833
UACUAAC	chr1:54512960-54513227(-)$1	267	94	101	17.9166
UACUAAC	chr2:152659020-152659287(-)$1	267	118	125	17.9166
uacuaac	chr14:50291841-50292133(-)$1	292	107	114	17.9166
UACUAAC	chr18:51905481-51905779(+)$1	298	126	133	17.9166
UACUAAA	chrX:123512184-123512511(-)$1	327	91	98	15.5000
aacuaac	chr7:73108681-73108954(+)$1	273	146	153	14.7500
UACUAAA	chr16:28978061-28978355(+)$1	294	116	123	15.5000
UACUAAU	chr6:160166003-160166284(+)$1	281	107	114	15.5833
UACUAAU	chr2:149449363-149449618(+)$1	255	102	109	15.5833
UACUAAC	chr12:30872369-30872641(-)$1	272	67	74	17.9166
UACUAAC	chr14:69846820-69847089(-)$1	269	144	151	17.9166
UACUAAA	chr7:64293548-64293841(+)$1	293	122	129	15.5000
UACUAAC	chr2:55254514-55254782(-)$1	268	71	78	17.9166
UACUAAC	chr12:67706371-67706745(+)$1	374	208	215	17.9166
CACUAAC	chr1:248040318-248040640(+)$1	322	160	167	14.5000
GACUAAC	chr4:37863286-37863631(+)$1	345	204	211	14.8333
uacuaau	chr5:87498051-87498349(-)$1	298	147	154	15.5833
AACUAAC	chr3:14528410-14528728(+)$1	318	139	146	14.7500
GACUAAC	chr19:46287260-46287565(-)$1	305	155	162	14.8333
UACUAAC	chr18:2582383-2582715(+)$1	332	174	181	17.9166
UACUAAU	chr20:57475320-57475575(+)$1	255	45	52	15.5833
UACUAAC	chr2:153508896-153509149(-)$1	253	110	117	17.9166
AACUAAC	chr3:185362619-185362938(-)$1	319	117	124	14.7500
UACUAAA	chr14:31086835-31087174(+)$1	339	119	126	15.5000
UACUAAC	chr14:53107165-53107506(-)$1	341	146	153	17.9166
UACUAAC	chr9:36339364-36339677(-)$1	313	118	125	17.9166
UACUAAA	chr9:86584797-86585053(-)$1	256	12	19	15.5000
GACUAAC	chr5:79946556-79946777(-)$1	221	71	78	14.8333
UACUAAU	chr20:57475219-57475520(+)$1	301	146	153	15.5833
UACUAAA	chr9:86584719-86584997(-)$1	278	85	92	15.5000
UACUAAA	chr11:22842216-22842488(-)$1	272	41	48	15.5000
UACUAAU	chr7:86792276-86792592(+)$1	316	157	164	15.5833
UACUAAC	chr3:183888833-183889105(+)$1	272	219	226	17.9166
UACUAAU	chr10:102124381-102124673(+)$1	292	153	160	15.5833
UACUAAC	chr9:115449109-115449408(-)$1	299	146	153	17.9166
UACUAAC	chr6:107100949-107101256(+)$1	307	104	111	17.9166

#otherMatches

#Struct PSSM
g::::::	chr2:182794460-182794783(+)$1	323	161	168	14.8333
::ddddd	chr1:109427889-109428205(+)$1	316	155	162	17.9166
C{BBKKI	chr1:160183236-160183548(+)$1	312	140	147	17.9166
^^^^^^^	chr22:39414530-39414880(+)$1	350	156	163	15.5000
^^^^^^^	chr6:127610057-127610343(-)$1	286	119	126	14.7500
CCC::::	chr6:157739430-157739739(-)$1	309	92	99	15.5833
cccssss	chr1:205685177-205685449(-)$1	272	137	144	14.5000
DDDccc!	chr10:93622933-93623245(+)$1	312	68	75	15.5000
ddddlll	chr6:91260448-91260753(-)$1	305	148	155	14.8333
ddddooo	chr7:116594838-116595153(+)$1	315	126	133	17.9166
+++++++	chr17:64804221-64804508(+)$1	287	143	150	14.7500
:::DDDD	chr3:178954091-178954348(+)$1	257	133	140	17.9166
cc]eeee	chr5:148884429-148884698(-)$1	269	107	114	14.8333
:::::::	chr2:85547883-85548195(-)$1	312	126	133	17.9166
>>>>>>>	chr8:144989272-144989557(-)$1	285	111	118	14.5000
::::EEE	chr3:183888905-183889247(+)$1	342	147	154	17.9166
ppppppp	chr6:88304054-88304390(+)$1	336	124	131	14.7500
:::::::	chr11:118267370-118267641(+)$1	271	103	110	15.5000
======2	chr1:117645209-117645484(+)$1	275	128	135	15.5833
ggggg33	chr1:241793615-241793951(-)$1	336	141	148	17.9166
:::::::	chr5:148884498-148884857(-)$1	359	4	11	17.9166
:::::::	chr1:78482651-78482957(+)$1	306	125	132	15.5833
bnnnnnb	chr3:96336719-96336997(-)$1	278	78	85	14.8333
dd!!ccc	chr5:87497987-87498251(-)$1	264	49	56	15.5833
dddeeee	chr1:54512960-54513227(-)$1	267	94	101	17.9166
:::::::	chr2:152659020-152659287(-)$1	267	118	125	17.9166
:::::::	chr14:50291841-50292133(-)$1	292	107	114	17.9166
:::::::	chr18:51905481-51905779(+)$1	298	126	133	17.9166
zzzzzzz	chrX:123512184-123512511(-)$1	327	91	98	15.5000
gggssss	chr7:73108681-73108954(+)$1	273	146	153	14.7500
dddd22d	chr16:28978061-28978355(+)$1	294	116	123	15.5000
qqqqqcc	chr6:160166003-160166284(+)$1	281	107	114	15.5833
ggggg++	chr2:149449363-149449618(+)$1	255	102	109	15.5833
ee:::::	chr12:30872369-30872641(-)$1	272	67	74	17.9166
7cccddd	chr14:69846820-69847089(-)$1	269	144	151	17.9166
HHHHHdd	chr7:64293548-64293841(+)$1	293	122	129	15.5000
7777ddd	chr2:55254514-55254782(-)$1	268	71	78	17.9166
yyyyyyy	chr12:67706371-67706745(+)$1	374	208	215	17.9166
b[ccc[b	chr1:248040318-248040640(+)$1	322	160	167	14.5000
bbbb]ee	chr4:37863286-37863631(+)$1	345	204	211	14.8333
dd!!ccc	chr5:87498051-87498349(-)$1	298	147	154	15.5833
mmdddd>	chr3:14528410-14528728(+)$1	318	139	146	14.7500
vvvvvbb	chr19:46287260-46287565(-)$1	305	155	162	14.8333
!bbqqqq	chr18:2582383-2582715(+)$1	332	174	181	17.9166
^^^^^^^	chr20:57475320-57475575(+)$1	255	45	52	15.5833
E::::::	chr2:153508896-153509149(-)$1	253	110	117	17.9166
:::::::	chr3:185362619-185362938(-)$1	319	117	124	14.7500
boooooo	chr14:31086835-31087174(+)$1	339	119	126	15.5000
(((((((	chr14:53107165-53107506(-)$1	341	146	153	17.9166
JJ:::::	chr9:36339364-36339677(-)$1	313	118	125	17.9166
^^^^^^^	chr9:86584797-86585053(-)$1	256	12	19	15.5000
b::::::	chr5:79946556-79946777(-)$1	221	71	78	14.8333
dddd[cc	chr20:57475219-57475520(+)$1	301	146	153	15.5833
ODDDDNN	chr9:86584719-86584997(-)$1	278	85	92	15.5000
:::::::	chr11:22842216-22842488(-)$1	272	41	48	15.5000
:::::::	chr7:86792276-86792592(+)$1	316	157	164	15.5833
:::::::	chr3:183888833-183889105(+)$1	272	219	226	17.9166
DDDMMMM	chr10:102124381-102124673(+)$1	292	153	160	15.5833
&cccmmm	chr9:115449109-115449408(-)$1	299	146	153	17.9166
^^^^^^^	chr6:107100949-107101256(+)$1	307	104	111	17.9166

#DB
)......	chr2:182794460-182794783(+)$1	1	161	168	14.8333
..(((((	chr1:109427889-109428205(+)$1	1	155	162	17.9166
(.((..(	chr1:160183236-160183548(+)$1	1	140	147	17.9166
.......	chr22:39414530-39414880(+)$1	1	156	163	15.5000
.......	chr6:127610057-127610343(-)$1	1	119	126	14.7500
(((....	chr6:157739430-157739739(-)$1	1	92	99	15.5833
(((....	chr1:205685177-205685449(-)$1	1	137	144	14.5000
((((((.	chr10:93622933-93623245(+)$1	1	68	75	15.5000
((((...	chr6:91260448-91260753(-)$1	1	148	155	14.8333
((((...	chr7:116594838-116595153(+)$1	1	126	133	17.9166
.......	chr17:64804221-64804508(+)$1	1	143	150	14.7500
...))))	chr3:178954091-178954348(+)$1	1	133	140	17.9166
)).))))	chr5:148884429-148884698(-)$1	1	107	114	14.8333
.......	chr2:85547883-85548195(-)$1	1	126	133	17.9166
.......	chr8:144989272-144989557(-)$1	1	111	118	14.5000
....(((	chr3:183888905-183889247(+)$1	1	147	154	17.9166
.......	chr6:88304054-88304390(+)$1	1	124	131	14.7500
.......	chr11:118267370-118267641(+)$1	1	103	110	15.5000
)))))).	chr1:117645209-117645484(+)$1	1	128	135	15.5833
)))))..	chr1:241793615-241793951(-)$1	1	141	148	17.9166
.......	chr5:148884498-148884857(-)$1	1	4	11	17.9166
.......	chr1:78482651-78482957(+)$1	1	125	132	15.5833
(.....)	chr3:96336719-96336997(-)$1	1	78	85	14.8333
((..(((	chr5:87497987-87498251(-)$1	1	49	56	15.5833
)))((((	chr1:54512960-54513227(-)$1	1	94	101	17.9166
.......	chr2:152659020-152659287(-)$1	1	118	125	17.9166
.......	chr14:50291841-50292133(-)$1	1	107	114	17.9166
.......	chr18:51905481-51905779(+)$1	1	126	133	17.9166
.......	chrX:123512184-123512511(-)$1	1	91	98	15.5000
(((....	chr7:73108681-73108954(+)$1	1	146	153	14.7500
))))..)	chr16:28978061-28978355(+)$1	1	116	123	15.5000
.....))	chr6:160166003-160166284(+)$1	1	107	114	15.5833
(((((..	chr2:149449363-149449618(+)$1	1	102	109	15.5833
)).....	chr12:30872369-30872641(-)$1	1	67	74	17.9166
.))))))	chr14:69846820-69847089(-)$1	1	144	151	17.9166
(((((((	chr7:64293548-64293841(+)$1	1	122	129	15.5000
....)))	chr2:55254514-55254782(-)$1	1	71	78	17.9166
.......	chr12:67706371-67706745(+)$1	1	208	215	17.9166
(.(((.(	chr1:248040318-248040640(+)$1	1	160	167	14.5000
)))).))	chr4:37863286-37863631(+)$1	1	204	211	14.8333
((..(((	chr5:87498051-87498349(-)$1	1	147	154	15.5833
..)))).	chr3:14528410-14528728(+)$1	1	139	146	14.7500
.....))	chr19:46287260-46287565(-)$1	1	155	162	14.8333
.((....	chr18:2582383-2582715(+)$1	1	174	181	17.9166
.......	chr20:57475320-57475575(+)$1	1	45	52	15.5833
)......	chr2:153508896-153509149(-)$1	1	110	117	17.9166
.......	chr3:185362619-185362938(-)$1	1	117	124	14.7500
(......	chr14:31086835-31087174(+)$1	1	119	126	15.5000
.......	chr14:53107165-53107506(-)$1	1	146	153	17.9166
((.....	chr9:36339364-36339677(-)$1	1	118	125	17.9166
.......	chr9:86584797-86585053(-)$1	1	12	19	15.5000
)......	chr5:79946556-79946777(-)$1	1	71	78	14.8333
((((.((	chr20:57475219-57475520(+)$1	1	146	153	15.5833
.((((..	chr9:86584719-86584997(-)$1	1	85	92	15.5000
.......	chr11:22842216-22842488(-)$1	1	41	48	15.5000
.......	chr7:86792276-86792592(+)$1	1	157	164	15.5833
.......	chr3:183888833-183889105(+)$1	1	219	226	17.9166
(((....	chr10:102124381-102124673(+)$1	1	153	160	15.5833
.(((...	chr9:115449109-115449408(-)$1	1	146	153	17.9166
.......	chr6:107100949-107101256(+)$1	1	104	111	17.9166

#PSSM
U : 0.66	G : 0.11	A : 0.08	u : 0.06	C : 0.05	a : 0.01	
A : 0.91	a : 0.08	
C : 0.91	c : 0.08	
U : 0.91	u : 0.08	
A : 0.91	a : 0.08	
A : 0.91	a : 0.08	
C : 0.61	A : 0.16	U : 0.13	u : 0.05	c : 0.03	

#score	974.3333333333351
#seq	60
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_UTR_m2_run1.nuc.txt

#NT
UGUUU	chr2:8868816-8869095(-)$1	279	104	109	15.0000
UGUUU	chr2:174939537-174939835(-)$1	298	49	54	15.0000
UGUUU	chr2:208473644-208473939(-)$1	295	44	49	15.0000
UGUUU	chr3:12939203-12939478(-)$1	275	181	186	15.0000
UGUUU	chr2:128619332-128619604(-)$1	272	71	76	15.0000
UGUUU	chr2:101622793-101623013(+)$1	220	92	97	15.0000
UGUUU	chr5:151190856-151191127(+)$1	271	103	108	15.0000
UGUUU	chr17:66510874-66511201(+)$1	327	100	105	15.0000
UGUUU	chr2:216225421-216225671(-)$1	250	58	63	15.0000
UGUUU	chr7:44841131-44841400(+)$1	269	18	23	15.0000
UGUUU	chr13:111372431-111372688(+)$1	257	9	14	15.0000
UGUUU	chr10:133769218-133769496(+)$1	278	7	12	15.0000
UGUUU	chr4:1950161-1950461(+)$1	300	277	282	15.0000
UGUUU	chr4:83274791-83275077(-)$1	286	221	226	15.0000
UGUUU	chr17:39847812-39848106(+)$1	294	72	77	15.0000
UGUUU	chrX:100650690-100650954(+)$1	264	100	105	15.0000
UGUUU	chr12:111157436-111157703(-)$1	267	125	130	15.0000
UGUUU	chr10:133770039-133770279(+)$1	240	87	92	15.0000
UGUUU	chr1:39471457-39471738(+)$1	281	100	105	15.0000
UGUUU	chr2:178085986-178086242(+)$1	256	132	137	15.0000
UGUUU	chr11:2152509-2152720(-)$1	211	158	163	15.0000
UGUUU	chr6:143382633-143382861(+)$1	228	101	106	15.0000
uguuu	chr2:149449893-149450196(+)$1	303	70	75	15.0000
UGUUU	chr4:103716972-103717227(-)$1	255	96	101	15.0000
UGUUU	chr2:223806846-223807081(+)$1	235	83	88	15.0000
UGUUU	chr16:84497366-84497677(-)$1	311	105	110	15.0000
UGUUU	chr20:34291924-34292160(-)$1	236	72	77	15.0000
UGUUU	chr2:131907320-131907627(+)$1	307	98	103	15.0000
UGUUU	chr4:74321445-74321688(+)$1	243	45	50	15.0000
UGUUU	chr12:111157532-111157805(-)$1	273	20	25	15.0000
UGUUU	chr9:123941334-123941659(-)$1	325	261	266	15.0000
UGUUU	chr6:18224201-18224506(-)$1	305	99	104	15.0000
UGUUU	chr17:53400255-53400522(+)$1	267	4	9	15.0000
UGUUU	chr18:33605343-33605664(-)$1	321	120	125	15.0000
UGUUU	chr17:1247615-1247907(-)$1	292	140	145	15.0000
UGUUU	chr16:21994577-21994833(+)$1	256	84	89	15.0000
UGUUU	chr12:125398904-125399208(-)$1	304	47	52	15.0000
UGUUU	chr6:3267919-3268221(+)$1	302	123	128	15.0000
UGUUU	chr16:84813206-84813499(+)$1	293	205	210	15.0000
UGUUU	chr10:133769016-133769312(+)$1	296	159	164	15.0000
UGUUU	chr15:63883549-63883853(+)$1	304	156	161	15.0000
UGUUU	chr5:134192288-134192581(+)$1	293	165	170	15.0000
UGUUU	chr17:73163593-73163917(-)$1	324	64	69	15.0000
UGUUU	chr19:39669947-39670203(+)$1	256	90	95	15.0000
UGUUU	chr18:56063713-56064029(+)$1	316	145	150	15.0000
UGUUU	chr12:56989529-56989804(-)$1	275	5	10	15.0000
UGUUU	chr22:29696265-29696539(+)$1	274	101	106	15.0000
UGUUU	chr3:48730906-48731208(-)$1	302	81	86	15.0000
UGUUU	chr2:178087690-178087928(+)$1	238	53	58	15.0000
UGUUU	chr6:114182909-114183202(+)$1	293	83	88	15.0000
UGUUU	chr2:223806897-223807155(+)$1	258	32	37	15.0000
UGUUU	chr2:61236786-61237083(-)$1	297	99	104	15.0000
UGUUU	chr3:48731008-48731246(-)$1	238	119	124	15.0000
UGUUU	chr12:69162124-69162408(+)$1	284	265	270	15.0000
uguuu	chr6:26469759-26470072(+)$1	313	49	54	15.0000
UGUUU	chr12:93801962-93802237(-)$1	275	246	251	15.0000
UGUUU	chr8:22280091-22280394(+)$1	303	54	59	15.0000
UGUUU	chr12:103231849-103232192(-)$1	343	100	105	15.0000
UGUUU	chr5:122344802-122345107(+)$1	305	47	52	15.0000
UGUUU	chr2:47387146-47387400(-)$1	254	0	5	15.0000
UGUUU	chr8:97621762-97622015(+)$1	253	93	98	15.0000
UGUUU	chr16:67918303-67918608(+)$1	305	50	55	15.0000
UGUUU	chr4:103717109-103717395(-)$1	286	91	96	15.0000
UGUUU	chr5:139495467-139495725(+)$1	258	191	196	15.0000
uguuu	chr4:140626678-140627011(+)$1	333	19	24	15.0000
UGUUU	chr17:27050862-27051136(+)$1	274	12	17	15.0000
UGUUU	chr6:26599277-26599533(+)$1	256	207	212	15.0000
UGUUU	chr14:39651352-39651601(+)$1	249	89	94	15.0000
UGUUU	chr19:17974029-17974382(+)$1	353	105	110	15.0000
UGUUU	chr10:3818592-3818831(-)$1	239	11	16	15.0000
UGUUU	chr10:124816191-124816471(+)$1	280	82	87	15.0000
UGUUU	chr2:232319275-232319562(-)$1	287	40	45	15.0000

#otherMatches

#Struct PSSM
:::::	chr16:11930957-11931304(-)$1	347	130	135	15.0000
eesss	chr2:8868816-8869095(-)$1	279	104	109	15.0000
JJJJJ	chr2:174939537-174939835(-)$1	298	49	54	15.0000
[bbnn	chr2:208473644-208473939(-)$1	295	44	49	15.0000
gggg:	chr3:12939203-12939478(-)$1	275	181	186	15.0000
hhmmm	chr2:128619332-128619604(-)$1	272	71	76	15.0000
uuuff	chr2:101622793-101623013(+)$1	220	92	97	15.0000
"""gg	chr5:151190856-151191127(+)$1	271	103	108	15.0000
cc]hh	chr17:66510874-66511201(+)$1	327	100	105	15.0000
mdddd	chr2:216225421-216225671(-)$1	250	58	63	15.0000
HHHHH	chr7:44841131-44841400(+)$1	269	18	23	15.0000
GG:::	chr13:111372431-111372688(+)$1	257	9	14	15.0000
Fdddd	chr10:133769218-133769496(+)$1	278	7	12	15.0000
}JJJJ	chr4:1950161-1950461(+)$1	300	277	282	15.0000
iiiii	chr4:83274791-83275077(-)$1	286	221	226	15.0000
ccc!!	chr17:39847812-39848106(+)$1	294	72	77	15.0000
d22cc	chrX:100650690-100650954(+)$1	264	100	105	15.0000
=====	chr12:111157436-111157703(-)$1	267	125	130	15.0000
ddd::	chr10:133770039-133770279(+)$1	240	87	92	15.0000
iiiii	chr1:39471457-39471738(+)$1	281	100	105	15.0000
2eeee	chr2:178085986-178086242(+)$1	256	132	137	15.0000
iiiii	chr11:2152509-2152720(-)$1	211	158	163	15.0000
iiiii	chr6:143382633-143382861(+)$1	228	101	106	15.0000
EEEHH	chr2:149449893-149450196(+)$1	303	70	75	15.0000
Ecccq	chr4:103716972-103717227(-)$1	255	96	101	15.0000
ggggg	chr2:223806846-223807081(+)$1	235	83	88	15.0000
DBBKK	chr16:84497366-84497677(-)$1	311	105	110	15.0000
ggggg	chr20:34291924-34292160(-)$1	236	72	77	15.0000
fffff	chr2:131907320-131907627(+)$1	307	98	103	15.0000
fffff	chr4:74321445-74321688(+)$1	243	45	50	15.0000
fffmm	chr12:111157532-111157805(-)$1	273	20	25	15.0000
ee:::	chr9:123941334-123941659(-)$1	325	261	266	15.0000
:EEEE	chr6:18224201-18224506(-)$1	305	99	104	15.0000
HHHHH	chr17:53400255-53400522(+)$1	267	4	9	15.0000
BNNNN	chr18:33605343-33605664(-)$1	321	120	125	15.0000
dddd:	chr17:1247615-1247907(-)$1	292	140	145	15.0000
ppppp	chr16:21994577-21994833(+)$1	256	84	89	15.0000
JJJJJ	chr12:125398904-125399208(-)$1	304	47	52	15.0000
JJJJJ	chr6:3267919-3268221(+)$1	302	123	128	15.0000
22ccc	chr16:84813206-84813499(+)$1	293	205	210	15.0000
ff'''	chr10:133769016-133769312(+)$1	296	159	164	15.0000
{EEEE	chr15:63883549-63883853(+)$1	304	156	161	15.0000
hhhhh	chr5:134192288-134192581(+)$1	293	165	170	15.0000
2aiii	chr17:73163593-73163917(-)$1	324	64	69	15.0000
ggggg	chr19:39669947-39670203(+)$1	256	90	95	15.0000
:eeee	chr18:56063713-56064029(+)$1	316	145	150	15.0000
HHHHF	chr12:56989529-56989804(-)$1	275	5	10	15.0000
2a333	chr22:29696265-29696539(+)$1	274	101	106	15.0000
JJJCC	chr3:48730906-48731208(-)$1	302	81	86	15.0000
[bbmm	chr2:178087690-178087928(+)$1	238	53	58	15.0000
CC:::	chr6:114182909-114183202(+)$1	293	83	88	15.0000
ggggg	chr2:223806897-223807155(+)$1	258	32	37	15.0000
d22dd	chr2:61236786-61237083(-)$1	297	99	104	15.0000
22hhh	chr3:48731008-48731246(-)$1	238	119	124	15.0000
eeee3	chr12:69162124-69162408(+)$1	284	265	270	15.0000
EEEE{	chr6:26469759-26470072(+)$1	313	49	54	15.0000
:::::	chr12:93801962-93802237(-)$1	275	246	251	15.0000
:====	chr8:22280091-22280394(+)$1	303	54	59	15.0000
:gggg	chr12:103231849-103232192(-)$1	343	100	105	15.0000
iiiii	chr5:122344802-122345107(+)$1	305	47	52	15.0000
:::::	chr2:47387146-47387400(-)$1	254	0	5	15.0000
iiiii	chr8:97621762-97622015(+)$1	253	93	98	15.0000
fffff	chr16:67918303-67918608(+)$1	305	50	55	15.0000
4hhhh	chr4:103717109-103717395(-)$1	286	91	96	15.0000
chhhh	chr5:139495467-139495725(+)$1	258	191	196	15.0000
^^^^^	chr4:140626678-140627011(+)$1	333	19	24	15.0000
QBB{G	chr17:27050862-27051136(+)$1	274	12	17	15.0000
:::::	chr6:26599277-26599533(+)$1	256	207	212	15.0000
miiii	chr14:39651352-39651601(+)$1	249	89	94	15.0000
3bb]e	chr19:17974029-17974382(+)$1	353	105	110	15.0000
:::::	chr10:3818592-3818831(-)$1	239	11	16	15.0000
#cccw	chr10:124816191-124816471(+)$1	280	82	87	15.0000
wwwww	chr2:232319275-232319562(-)$1	287	40	45	15.0000

#DB
.....	chr16:11930957-11931304(-)$1	1	130	135	15.0000
((...	chr2:8868816-8869095(-)$1	1	104	109	15.0000
(((((	chr2:174939537-174939835(-)$1	1	49	54	15.0000
.((..	chr2:208473644-208473939(-)$1	1	44	49	15.0000
)))).	chr3:12939203-12939478(-)$1	1	181	186	15.0000
((...	chr2:128619332-128619604(-)$1	1	71	76	15.0000
...))	chr2:101622793-101623013(+)$1	1	92	97	15.0000
...((	chr5:151190856-151191127(+)$1	1	103	108	15.0000
)).))	chr17:66510874-66511201(+)$1	1	100	105	15.0000
.))))	chr2:216225421-216225671(-)$1	1	58	63	15.0000
(((((	chr7:44841131-44841400(+)$1	1	18	23	15.0000
((...	chr13:111372431-111372688(+)$1	1	9	14	15.0000
(((((	chr10:133769218-133769496(+)$1	1	7	12	15.0000
.))))	chr4:1950161-1950461(+)$1	1	277	282	15.0000
)))))	chr4:83274791-83275077(-)$1	1	221	226	15.0000
(((..	chr17:39847812-39848106(+)$1	1	72	77	15.0000
)..))	chrX:100650690-100650954(+)$1	1	100	105	15.0000
(((((	chr12:111157436-111157703(-)$1	1	125	130	15.0000
)))..	chr10:133770039-133770279(+)$1	1	87	92	15.0000
)))))	chr1:39471457-39471738(+)$1	1	100	105	15.0000
.))))	chr2:178085986-178086242(+)$1	1	132	137	15.0000
)))))	chr11:2152509-2152720(-)$1	1	158	163	15.0000
)))))	chr6:143382633-143382861(+)$1	1	101	106	15.0000
(((((	chr2:149449893-149450196(+)$1	1	70	75	15.0000
((((.	chr4:103716972-103717227(-)$1	1	96	101	15.0000
(((((	chr2:223806846-223807081(+)$1	1	83	88	15.0000
(((..	chr16:84497366-84497677(-)$1	1	105	110	15.0000
)))))	chr20:34291924-34292160(-)$1	1	72	77	15.0000
)))))	chr2:131907320-131907627(+)$1	1	98	103	15.0000
)))))	chr4:74321445-74321688(+)$1	1	45	50	15.0000
(((..	chr12:111157532-111157805(-)$1	1	20	25	15.0000
))...	chr9:123941334-123941659(-)$1	1	261	266	15.0000
.((((	chr6:18224201-18224506(-)$1	1	99	104	15.0000
(((((	chr17:53400255-53400522(+)$1	1	4	9	15.0000
(....	chr18:33605343-33605664(-)$1	1	120	125	15.0000
)))).	chr17:1247615-1247907(-)$1	1	140	145	15.0000
.....	chr16:21994577-21994833(+)$1	1	84	89	15.0000
(((((	chr12:125398904-125399208(-)$1	1	47	52	15.0000
(((((	chr6:3267919-3268221(+)$1	1	123	128	15.0000
..)))	chr16:84813206-84813499(+)$1	1	205	210	15.0000
((...	chr10:133769016-133769312(+)$1	1	159	164	15.0000
.((((	chr15:63883549-63883853(+)$1	1	156	161	15.0000
(((((	chr5:134192288-134192581(+)$1	1	165	170	15.0000
.)(((	chr17:73163593-73163917(-)$1	1	64	69	15.0000
)))))	chr19:39669947-39670203(+)$1	1	90	95	15.0000
.((((	chr18:56063713-56064029(+)$1	1	145	150	15.0000
(((((	chr12:56989529-56989804(-)$1	1	5	10	15.0000
.)...	chr22:29696265-29696539(+)$1	1	101	106	15.0000
(((((	chr3:48730906-48731208(-)$1	1	81	86	15.0000
.((..	chr2:178087690-178087928(+)$1	1	53	58	15.0000
((...	chr6:114182909-114183202(+)$1	1	83	88	15.0000
)))))	chr2:223806897-223807155(+)$1	1	32	37	15.0000
)..))	chr2:61236786-61237083(-)$1	1	99	104	15.0000
..)))	chr3:48731008-48731246(-)$1	1	119	124	15.0000
)))).	chr12:69162124-69162408(+)$1	1	265	270	15.0000
((((.	chr6:26469759-26470072(+)$1	1	49	54	15.0000
.....	chr12:93801962-93802237(-)$1	1	246	251	15.0000
.((((	chr8:22280091-22280394(+)$1	1	54	59	15.0000
.((((	chr12:103231849-103232192(-)$1	1	100	105	15.0000
(((((	chr5:122344802-122345107(+)$1	1	47	52	15.0000
.....	chr2:47387146-47387400(-)$1	1	0	5	15.0000
)))))	chr8:97621762-97622015(+)$1	1	93	98	15.0000
(((((	chr16:67918303-67918608(+)$1	1	50	55	15.0000
.))))	chr4:103717109-103717395(-)$1	1	91	96	15.0000
)((((	chr5:139495467-139495725(+)$1	1	191	196	15.0000
.....	chr4:140626678-140627011(+)$1	1	19	24	15.0000
.((.(	chr17:27050862-27051136(+)$1	1	12	17	15.0000
.....	chr6:26599277-26599533(+)$1	1	207	212	15.0000
.))))	chr14:39651352-39651601(+)$1	1	89	94	15.0000
.)).)	chr19:17974029-17974382(+)$1	1	105	110	15.0000
.....	chr10:3818592-3818831(-)$1	1	11	16	15.0000
.(((.	chr10:124816191-124816471(+)$1	1	82	87	15.0000
.....	chr2:232319275-232319562(-)$1	1	40	45	15.0000

#PSSM
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	

#score	1095.0000000000005
#seq	73
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_UTR_m2_run1.nuc.txt

#NT
UGUGG	chr6:31698293-31698552(-)$1	259	67	72	14.9999
UGUGG	chr20:1165115-1165373(-)$1	258	183	188	14.9999
UGUGG	chr4:174253099-174253320(-)$1	221	112	117	14.9999
UGUGG	chr17:27047468-27047715(+)$1	247	167	172	14.9999
UGUGG	chr8:102217355-102217630(-)$1	275	234	239	14.9999
ugugg	chr7:111928873-111929110(+)$1	237	113	118	14.9999
ugugg	chr22:19418955-19419219(-)$1	264	8	13	14.9999
UGUGG	chr17:27047515-27047735(+)$1	220	120	125	14.9999
UGUGG	chr6:27860378-27860621(-)$1	243	196	201	14.9999
UGUGG	chr4:174253120-174253335(-)$1	215	127	132	14.9999
UGUGG	chr19:49605894-49606150(+)$1	256	7	12	14.9999
ugugg	chr11:47380022-47380303(-)$1	281	50	55	14.9999

#otherMatches

#Struct PSSM
IIIII	chr5:43290991-43291285(-)$1	294	252	257	14.9999
EEEE?	chr6:31698293-31698552(-)$1	259	67	72	14.9999
d]ddd	chr20:1165115-1165373(-)$1	258	183	188	14.9999
fnnnn	chr4:174253099-174253320(-)$1	221	112	117	14.9999
5555e	chr17:27047468-27047715(+)$1	247	167	172	14.9999
nnddd	chr8:102217355-102217630(-)$1	275	234	239	14.9999
E::dd	chr7:111928873-111929110(+)$1	237	113	118	14.9999
FFFFF	chr22:19418955-19419219(-)$1	264	8	13	14.9999
5555e	chr17:27047515-27047735(+)$1	220	120	125	14.9999
"ffff	chr6:27860378-27860621(-)$1	243	196	201	14.9999
BBCCC	chr4:174253120-174253335(-)$1	215	127	132	14.9999
c((((	chr19:49605894-49606150(+)$1	256	7	12	14.9999
OOOOA	chr11:47380022-47380303(-)$1	281	50	55	14.9999

#DB
)))))	chr5:43290991-43291285(-)$1	1	252	257	14.9999
)))).	chr6:31698293-31698552(-)$1	1	67	72	14.9999
).)))	chr20:1165115-1165373(-)$1	1	183	188	14.9999
(....	chr4:174253099-174253320(-)$1	1	112	117	14.9999
....)	chr17:27047468-27047715(+)$1	1	167	172	14.9999
..)))	chr8:102217355-102217630(-)$1	1	234	239	14.9999
(..((	chr7:111928873-111929110(+)$1	1	113	118	14.9999
(((((	chr22:19418955-19419219(-)$1	1	8	13	14.9999
....)	chr17:27047515-27047735(+)$1	1	120	125	14.9999
.((((	chr6:27860378-27860621(-)$1	1	196	201	14.9999
)))))	chr4:174253120-174253335(-)$1	1	127	132	14.9999
(....	chr19:49605894-49606150(+)$1	1	7	12	14.9999
....(	chr11:47380022-47380303(-)$1	1	50	55	14.9999

#PSSM
U : 0.76	u : 0.23	
G : 0.76	g : 0.23	
U : 0.76	u : 0.23	
G : 0.76	g : 0.23	
G : 0.76	g : 0.23	

#score	194.99999999999997
#seq	13
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_transcript_m1_run1.nuc.txt

#NT
uuuuuuuuacu	chr7:126994528-126994802(-)$1	274	261	272	23.2777
UUUAUUUUCCU	chr3:52727942-52728231(+)$1	289	246	257	21.4259
UUUAUUUUCUU	chr2:152285059-152285325(+)$1	266	35	46	19.5740
UUUUCUUUGCU	chr16:28837920-28838173(+)$1	253	27	38	19.8518
UCUUUUUUCCU	chr1:246804939-246805188(+)$1	249	96	107	21.0555
UUUUUUUUUUU	chr7:104707069-104707336(+)$1	267	89	100	22.9999
UUGUUUUUUCU	chr20:61827941-61828194(-)$1	253	89	100	20.4999
UUUUCUUUUCU	chr17:34151710-34151992(+)$1	282	96	107	21.5185
UUUUCUUUCCU	chr3:133367920-133368187(-)$1	267	70	81	22.3518
UUUUUUUUCUU	chr12:64829121-64829392(+)$1	271	86	97	23.8333
uuuuuuuuucu	chr5:54625075-54625323(+)$1	248	86	97	24.8518
UUCUUUUUCCU	chr15:60740838-60741102(-)$1	264	96	107	21.3333
uuuuuuuuuuu	chr7:131163274-131163536(+)$1	262	80	91	22.9999
UUUUUUUUUGU	chr20:3899003-3899305(+)$1	302	6	17	21.7962
UUUUUUUUCCU	chr16:66858639-66858913(-)$1	274	96	107	25.6851
CUUUUUUUUCU	chrX:102938781-102939036(-)$1	255	87	98	20.2222
UUAUUUUUGCU	chr6:108242979-108243210(-)$1	231	49	60	18.7407
UUUUUUUUCCC	chr1:155883996-155884258(-)$1	262	95	106	21.6111
UCUUUUUUUCU	chr6:150048181-150048446(-)$1	265	96	107	20.2222
UUUUUUAUUCU	chr2:24086258-24086535(-)$1	277	94	105	20.3148
UUUUUUUUCAG	chr6:99848055-99848278(-)$1	223	80	91	18.7407
UUUUUUUUCAG	chr9:95025185-95025435(-)$1	250	87	98	18.7407
UUUUUUUUCAU	chr3:38539013-38539278(+)$1	265	89	100	22.9999
UUCUUUUUUCU	chr1:161771729-161771941(+)$1	212	94	105	20.4999
uuuuuuuucuu	chr19:6745817-6746083(+)$1	266	64	75	23.8333
UUUCUUUUCUU	chr1:247053948-247054197(-)$1	249	23	34	19.4814
UUUUCUUUCCU	chr11:3765781-3765994(-)$1	213	91	102	22.3518
UUUUUUUUCUU	chr1:193181091-193181331(+)$1	240	84	95	23.8333
uuuuuuuuaau	chr8:53558273-53558535(-)$1	262	73	84	20.5925
UUUUUUUUUCU	chr5:38959290-38959530(-)$1	240	90	101	24.8518
UUUUUUUGUCU	chr17:74148411-74148737(-)$1	326	95	106	20.2222
UUGUUUUUCUU	chr11:6630002-6630254(+)$1	252	95	106	19.4814
CUUUUUUUCUU	chr6:96970911-96971158(+)$1	247	91	102	19.2037
uuuuuuuuccc	chr13:28777006-28777255(+)$1	249	98	109	21.6111
UUUUUUUUCCU	chr7:155099831-155100109(+)$1	278	96	107	25.6851
UUUCUUUUCCU	chr1:167984915-167985194(+)$1	279	81	92	21.3333
uuuuuuuuucu	chr11:3789793-3790085(-)$1	292	88	99	24.8518
UUUUUUUUCUU	chr2:95767319-95767571(-)$1	252	159	170	23.8333
UUUUUUGUUCU	chr15:66048640-66048945(-)$1	305	52	63	20.2222
UUUUUUUUUUU	chr2:183831930-183832195(-)$1	265	83	94	22.9999
UUUUUUUUUUU	chr1:78435547-78435789(-)$1	242	76	87	22.9999
UUUUCUUUCCU	chr11:85753435-85753680(-)$1	245	95	106	22.3518
UUUUUUUUCAU	chr3:44826255-44826504(+)$1	249	62	73	22.9999
UUUUUUUUCCU	chr6:79911303-79911553(-)$1	250	86	97	25.6851
UUUUUUUUCCC	chr1:212141901-212142160(-)$1	259	98	109	21.6111
uuuuuuugccu	chr7:131020668-131020925(+)$1	257	82	93	21.0555
UUUUCUUUCUU	chr11:47752949-47753220(-)$1	271	87	98	20.4999
uuuucuuuucu	chr6:163991610-163991868(+)$1	258	66	77	21.5185
UUUUUUAUCCU	chr17:27000261-27000566(+)$1	305	96	107	21.1481
UUUAUUUUACU	chr2:54175507-54175778(-)$1	271	87	98	19.0185
UUUUUUUUCCC	chr19:54972712-54972964(+)$1	252	90	101	21.6111
UUUUCUUUUCU	chr12:22672017-22672303(-)$1	286	93	104	21.5185
UUUUCUUUUCU	chr1:203802939-203803206(+)$1	267	65	76	21.5185

#otherMatches

#Struct PSSM
:::::::::::	chr3:195434886-195435162(+)$1	276	84	95	22.9999
IIIIII}EEEE	chr7:126994528-126994802(-)$1	274	261	272	23.2777
iii55555eee	chr3:52727942-52728231(+)$1	289	246	257	21.4259
gggzzzzzzzz	chr2:152285059-152285325(+)$1	266	35	46	19.5740
^^^^^^^^^^^	chr16:28837920-28838173(+)$1	253	27	38	19.8518
::::HHHHHHH	chr1:246804939-246805188(+)$1	249	96	107	21.0555
ddsssssssss	chr7:104707069-104707336(+)$1	267	89	100	22.9999
ddddttttttt	chr20:61827941-61828194(-)$1	253	89	100	20.4999
ff]bb::::::	chr17:34151710-34151992(+)$1	282	96	107	21.5185
ddddqqqqqqq	chr3:133367920-133368187(-)$1	267	70	81	22.3518
ee]dddd>>>>	chr12:64829121-64829392(+)$1	271	86	97	23.8333
:::::::::::	chr5:54625075-54625323(+)$1	248	86	97	24.8518
gggggg:::::	chr15:60740838-60741102(-)$1	264	96	107	21.3333
b[cccyyyyyy	chr7:131163274-131163536(+)$1	262	80	91	22.9999
::::::::::J	chr20:3899003-3899305(+)$1	302	6	17	21.7962
::::::::::f	chr16:66858639-66858913(-)$1	274	96	107	25.6851
DD}DDDD}FFF	chrX:102938781-102939036(-)$1	255	87	98	20.2222
mbb]eeeee]c	chr6:108242979-108243210(-)$1	231	49	60	18.7407
eee[eeeee!!	chr1:155883996-155884258(-)$1	262	95	106	21.6111
=vvvvvvvvvv	chr6:150048181-150048446(-)$1	265	96	107	20.2222
uuuuuuuuuuu	chr2:24086258-24086535(-)$1	277	94	105	20.3148
:eeeee[ccc[	chr6:99848055-99848278(-)$1	223	80	91	18.7407
::::::::ddd	chr9:95025185-95025435(-)$1	250	87	98	18.7407
:::::::::::	chr3:38539013-38539278(+)$1	265	89	100	22.9999
pbb99999999	chr1:161771729-161771941(+)$1	212	94	105	20.4999
:::::::::::	chr19:6745817-6746083(+)$1	266	64	75	23.8333
GGG::::::::	chr1:247053948-247054197(-)$1	249	23	34	19.4814
:::::::::::	chr11:3765781-3765994(-)$1	213	91	102	22.3518
f++++++++++	chr1:193181091-193181331(+)$1	240	84	95	23.8333
JJJJJJJJKKC	chr8:53558273-53558535(-)$1	262	73	84	20.5925
iiiiii:::::	chr5:38959290-38959530(-)$1	240	90	101	24.8518
=========$$	chr17:74148411-74148737(-)$1	326	95	106	20.2222
eeee:::cccn	chr11:6630002-6630254(+)$1	252	95	106	19.4814
qqqqqdddd:d	chr6:96970911-96971158(+)$1	247	91	102	19.2037
:::::::::::	chr13:28777006-28777255(+)$1	249	98	109	21.6111
HHHHHHHH{EE	chr7:155099831-155100109(+)$1	278	96	107	25.6851
$dddd####an	chr1:167984915-167985194(+)$1	279	81	92	21.3333
::::::::fff	chr11:3789793-3790085(-)$1	292	88	99	24.8518
dddbb!!eeee	chr2:95767319-95767571(-)$1	252	159	170	23.8333
e$$$$$bb"""	chr15:66048640-66048945(-)$1	305	52	63	20.2222
eee666666ee	chr2:183831930-183832195(-)$1	265	83	94	22.9999
>>>>>>>>>>i	chr1:78435547-78435789(-)$1	242	76	87	22.9999
:::::::::::	chr11:85753435-85753680(-)$1	245	95	106	22.3518
gggg::::FFF	chr3:44826255-44826504(+)$1	249	62	73	22.9999
JJJJJJJJ:gg	chr6:79911303-79911553(-)$1	250	86	97	25.6851
WWWWWWWWWWE	chr1:212141901-212142160(-)$1	259	98	109	21.6111
:::::::====	chr7:131020668-131020925(+)$1	257	82	93	21.0555
iiiiiii::DD	chr11:47752949-47753220(-)$1	271	87	98	20.4999
^^^^^^^^^^^	chr6:163991610-163991868(+)$1	258	66	77	21.5185
d[bb[ccc[dd	chr17:27000261-27000566(+)$1	305	96	107	21.1481
ffff!!cccee	chr2:54175507-54175778(-)$1	271	87	98	19.0185
:::::::::::	chr19:54972712-54972964(+)$1	252	90	101	21.6111
d!!bbwwwwww	chr12:22672017-22672303(-)$1	286	93	104	21.5185
zzzzccc]bbh	chr1:203802939-203803206(+)$1	267	65	76	21.5185

#DB
...........	chr3:195434886-195435162(+)$1	1	84	95	22.9999
)))))).))))	chr7:126994528-126994802(-)$1	1	261	272	23.2777
))).....)))	chr3:52727942-52728231(+)$1	1	246	257	21.4259
(((........	chr2:152285059-152285325(+)$1	1	35	46	19.5740
...........	chr16:28837920-28838173(+)$1	1	27	38	19.8518
....(((((((	chr1:246804939-246805188(+)$1	1	96	107	21.0555
((.........	chr7:104707069-104707336(+)$1	1	89	100	22.9999
((((.......	chr20:61827941-61828194(-)$1	1	89	100	20.4999
)).))......	chr17:34151710-34151992(+)$1	1	96	107	21.5185
((((.......	chr3:133367920-133368187(-)$1	1	70	81	22.3518
)).))))....	chr12:64829121-64829392(+)$1	1	86	97	23.8333
...........	chr5:54625075-54625323(+)$1	1	86	97	24.8518
)))))).....	chr15:60740838-60741102(-)$1	1	96	107	21.3333
(.(((......	chr7:131163274-131163536(+)$1	1	80	91	22.9999
..........(	chr20:3899003-3899305(+)$1	1	6	17	21.7962
..........(	chr16:66858639-66858913(-)$1	1	96	107	25.6851
)).)))).)))	chrX:102938781-102939036(-)$1	1	87	98	20.2222
.)).))))).)	chr6:108242979-108243210(-)$1	1	49	60	18.7407
(((.(((((..	chr1:155883996-155884258(-)$1	1	95	106	21.6111
(..........	chr6:150048181-150048446(-)$1	1	96	107	20.2222
...........	chr2:24086258-24086535(-)$1	1	94	105	20.3148
.(((((.(((.	chr6:99848055-99848278(-)$1	1	80	91	18.7407
........(((	chr9:95025185-95025435(-)$1	1	87	98	18.7407
...........	chr3:38539013-38539278(+)$1	1	89	100	22.9999
.))........	chr1:161771729-161771941(+)$1	1	94	105	20.4999
...........	chr19:6745817-6746083(+)$1	1	64	75	23.8333
(((........	chr1:247053948-247054197(-)$1	1	23	34	19.4814
...........	chr11:3765781-3765994(-)$1	1	91	102	22.3518
(..........	chr1:193181091-193181331(+)$1	1	84	95	23.8333
((((((((..(	chr8:53558273-53558535(-)$1	1	73	84	20.5925
)))))).....	chr5:38959290-38959530(-)$1	1	90	101	24.8518
(((((((((..	chr17:74148411-74148737(-)$1	1	95	106	20.2222
))))...(((.	chr11:6630002-6630254(+)$1	1	95	106	19.4814
.....)))).(	chr6:96970911-96971158(+)$1	1	91	102	19.2037
...........	chr13:28777006-28777255(+)$1	1	98	109	21.6111
((((((((.((	chr7:155099831-155100109(+)$1	1	96	107	25.6851
.((((....(.	chr1:167984915-167985194(+)$1	1	81	92	21.3333
........(((	chr11:3789793-3790085(-)$1	1	88	99	24.8518
(((((..((((	chr2:95767319-95767571(-)$1	1	159	170	23.8333
(.....((...	chr15:66048640-66048945(-)$1	1	52	63	20.2222
)))......))	chr2:183831930-183832195(-)$1	1	83	94	22.9999
..........)	chr1:78435547-78435789(-)$1	1	76	87	22.9999
...........	chr11:85753435-85753680(-)$1	1	95	106	22.3518
))))....(((	chr3:44826255-44826504(+)$1	1	62	73	22.9999
)))))))).((	chr6:79911303-79911553(-)$1	1	86	97	25.6851
..........(	chr1:212141901-212142160(-)$1	1	98	109	21.6111
.......((((	chr7:131020668-131020925(+)$1	1	82	93	21.0555
)))))))..((	chr11:47752949-47753220(-)$1	1	87	98	20.4999
...........	chr6:163991610-163991868(+)$1	1	66	77	21.5185
(.((.(((.((	chr17:27000261-27000566(+)$1	1	96	107	21.1481
((((..(((((	chr2:54175507-54175778(-)$1	1	87	98	19.0185
...........	chr19:54972712-54972964(+)$1	1	90	101	21.6111
(..((......	chr12:22672017-22672303(-)$1	1	93	104	21.5185
....))).)))	chr1:203802939-203803206(+)$1	1	65	76	21.5185

#PSSM
U : 0.77	u : 0.18	C : 0.03	
U : 0.77	u : 0.18	C : 0.03	
U : 0.72	u : 0.18	G : 0.03	C : 0.03	A : 0.01	
U : 0.72	u : 0.18	A : 0.05	C : 0.03	
U : 0.66	u : 0.16	C : 0.14	c : 0.01	
U : 0.81	u : 0.18	
U : 0.77	u : 0.16	A : 0.03	G : 0.01	
U : 0.81	u : 0.14	G : 0.01	g : 0.01	
C : 0.48	U : 0.29	u : 0.07	c : 0.05	a : 0.03	G : 0.03	A : 0.01	
C : 0.51	U : 0.22	c : 0.11	A : 0.07	u : 0.03	G : 0.01	a : 0.01	
U : 0.74	u : 0.14	C : 0.05	G : 0.03	c : 0.01	

#score	1176.0740740740732
#seq	54
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_UTR_m2_run1.nuc.txt

#NT
UGGAAGGAAGAA	chr8:144678717-144679001(-)$1	284	90	102	16.5000
CGGAAGGCAGGU	chr15:67391098-67391418(+)$1	320	2	14	19.0000
ggacaggcaggg	chr13:111287201-111287577(+)$1	376	115	127	19.4999
ggggggggaggG	chr2:20550323-20550588(-)$1	265	92	104	18.5000
gggagggaaggg	chr6:86352557-86352823(-)$1	266	80	92	22.5000
GGGAAGGAAGGG	chr11:18034165-18034427(-)$1	262	103	115	25.5000
GGGGAGGCAGGU	chrX:17755994-17756257(+)$1	263	98	110	20.5000
GGAGAGGAAGGG	chr14:24776731-24777073(+)$1	342	188	200	21.9999
gggaaggaaggg	chr2:37333056-37333342(-)$1	286	41	53	25.5000

#otherMatches

#Struct PSSM
cbb!!bbmmmmb	chr11:71718544-71718837(-)$1	293	182	194	18.5000
vvvvvvvvvvee	chr8:144678717-144679001(-)$1	284	90	102	16.5000
c[ccc!!ccc[b	chr15:67391098-67391418(+)$1	320	2	14	19.0000
IIIIIIII:FFF	chr13:111287201-111287577(+)$1	376	115	127	19.4999
JJJJJJJJJJff	chr2:20550323-20550588(-)$1	265	92	104	18.5000
::::::::::::	chr6:86352557-86352823(-)$1	266	80	92	22.5000
DDLLLCCC{DDD	chr11:18034165-18034427(-)$1	262	103	115	25.5000
oooooffffff]	chrX:17755994-17756257(+)$1	263	98	110	20.5000
cwwwwwwwwwww	chr14:24776731-24777073(+)$1	342	188	200	21.9999
ddd:::::::::	chr2:37333056-37333342(-)$1	286	41	53	25.5000

#DB
(((..((....)	chr11:71718544-71718837(-)$1	1	182	194	18.5000
..........))	chr8:144678717-144679001(-)$1	1	90	102	16.5000
(.(((..(((.(	chr15:67391098-67391418(+)$1	1	2	14	19.0000
)))))))).(((	chr13:111287201-111287577(+)$1	1	115	127	19.4999
((((((((((((	chr2:20550323-20550588(-)$1	1	92	104	18.5000
............	chr6:86352557-86352823(-)$1	1	80	92	22.5000
((...(((.(((	chr11:18034165-18034427(-)$1	1	103	115	25.5000
.....)))))).	chrX:17755994-17756257(+)$1	1	98	110	20.5000
(...........	chr14:24776731-24777073(+)$1	1	188	200	21.9999
))).........	chr2:37333056-37333342(-)$1	1	41	53	25.5000

#PSSM
g : 0.40	G : 0.30	U : 0.20	C : 0.10	
G : 0.60	g : 0.40	
G : 0.40	g : 0.30	A : 0.20	a : 0.10	
A : 0.40	a : 0.20	G : 0.20	c : 0.10	g : 0.10	
A : 0.60	a : 0.20	g : 0.20	
G : 0.60	g : 0.40	
G : 0.60	g : 0.40	
A : 0.40	C : 0.20	a : 0.20	c : 0.10	g : 0.10	
A : 0.60	a : 0.40	
G : 0.60	g : 0.40	
G : 0.50	g : 0.40	A : 0.10	
g : 0.30	G : 0.30	U : 0.20	C : 0.10	A : 0.10	

#score	208.0
#seq	10
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_transcript_m3_run2.nuc.txt

#NT
CUG	chr17:79167576-79167828(-)$1	252	13	16	9.0000
CUG	chr8:145107177-145107425(-)$1	248	41	44	9.0000
CUG	chr7:72398873-72399144(+)$1	271	92	95	9.0000
CUG	chr18:60225867-60226150(+)$1	283	46	49	9.0000
CUG	chr7:99048330-99048585(+)$1	255	1	4	9.0000
CUG	chr16:456264-456533(+)$1	269	5	8	9.0000
CUG	chr2:118694129-118694384(-)$1	255	32	35	9.0000
CUG	chr19:39926105-39926335(-)$1	230	0	3	9.0000
CUG	chr15:43022187-43022452(-)$1	265	3	6	9.0000
CUG	chr2:219532496-219532746(-)$1	250	55	58	9.0000
CUG	chr16:89597097-89597394(+)$1	297	86	89	9.0000
CUG	chr1:151337557-151337853(-)$1	296	29	32	9.0000
CUG	chr11:67052347-67052605(+)$1	258	32	35	9.0000
CUG	chr19:7998612-7998834(-)$1	222	110	113	9.0000
CUG	chr2:74732939-74733181(-)$1	242	5	8	9.0000
CUG	chr7:99696504-99696729(-)$1	225	13	16	9.0000
CUG	chr16:89851133-89851379(-)$1	246	39	42	9.0000
CUG	chr16:69363752-69364011(-)$1	259	9	12	9.0000
CUG	chr10:70100964-70101207(+)$1	243	12	15	9.0000
CUG	chr11:65302744-65303000(+)$1	256	4	7	9.0000
CUG	chr7:45931572-45931808(+)$1	236	45	48	9.0000
CUG	chr20:61594016-61594246(+)$1	230	7	10	9.0000
cug	chr14:59925431-59925682(-)$1	251	126	129	9.0000
CUG	chr3:184070382-184070635(-)$1	253	11	14	9.0000
CUG	chr2:120689993-120690260(+)$1	267	0	3	9.0000
CUG	chr11:601570-601852(+)$1	282	152	155	9.0000
CUG	chr16:90102890-90103144(+)$1	254	11	14	9.0000
cug	chr6:30851947-30852246(+)$1	299	2	5	9.0000
CUG	chr11:47307903-47308198(+)$1	295	7	10	9.0000
CUG	chr12:51092134-51092385(+)$1	251	59	62	9.0000
CUG	chr5:457003-457298(+)$1	295	2	5	9.0000
CUG	chr16:29819046-29819325(+)$1	279	54	57	9.0000
CUG	chr19:619449-619669(-)$1	220	39	42	9.0000
CUG	chr17:4798995-4799265(+)$1	270	11	14	9.0000
CUG	chr10:94452253-94452519(+)$1	266	17	20	9.0000
CUG	chr14:24661263-24661485(-)$1	222	6	9	9.0000
CUG	chr16:89627032-89627262(+)$1	230	7	10	9.0000
CUG	chr19:7670251-7670493(+)$1	242	16	19	9.0000
CUG	chr16:87744733-87744959(-)$1	226	2	5	9.0000
CUG	chr19:19766489-19766712(-)$1	223	40	43	9.0000
CUG	chr7:6452285-6452548(-)$1	263	59	62	9.0000
CUG	chr16:28855836-28856071(-)$1	235	33	36	9.0000
CUG	chr21:47683874-47684115(-)$1	241	23	26	9.0000
CUG	chr19:18273187-18273452(+)$1	265	118	121	9.0000
CUG	chr19:804602-804836(+)$1	234	74	77	9.0000
CUG	chr19:5592578-5592830(-)$1	252	130	133	9.0000
CUG	chr2:27591453-27591708(-)$1	255	19	22	9.0000
CUG	chr11:61495653-61495914(+)$1	261	47	50	9.0000
CUG	chr16:50100152-50100435(+)$1	283	16	19	9.0000
CUG	chr3:51994394-51994644(-)$1	250	18	21	9.0000
CUG	chr17:40665934-40666185(+)$1	251	3	6	9.0000
CUG	chr14:105219515-105219804(+)$1	289	37	40	9.0000
CUG	chr22:46663868-46664114(+)$1	246	86	89	9.0000
CUG	chr16:730617-730870(+)$1	253	13	16	9.0000
CUG	chr14:24687460-24687699(-)$1	239	53	56	9.0000
CUG	chr17:40828275-40828527(-)$1	252	3	6	9.0000
CUG	chr17:80019754-80020008(-)$1	254	2	5	9.0000
CUG	chr16:72137924-72138189(+)$1	265	22	25	9.0000
CUG	chr16:67916117-67916380(+)$1	263	11	14	9.0000
CUG	chr17:27446212-27446481(-)$1	269	17	20	9.0000
CUG	chr4:152053375-152053620(-)$1	245	50	53	9.0000
CUG	chr2:106728963-106729238(-)$1	275	8	11	9.0000
CUG	chr17:4457097-4457340(-)$1	243	18	21	9.0000
CUG	chr4:3214316-3214612(+)$1	296	6	9	9.0000
CUG	chr19:9938949-9939231(+)$1	282	5	8	9.0000
CUG	chr6:161536185-161536452(+)$1	267	42	45	9.0000
CUG	chr20:62680259-62680543(-)$1	284	1	4	9.0000
CUG	chr22:37889950-37890251(-)$1	301	2	5	9.0000
CUG	chr7:5427159-5427385(-)$1	226	28	31	9.0000
CUG	chr16:2110688-2110962(+)$1	274	24	27	9.0000
CUG	chr17:27445250-27445513(-)$1	263	31	34	9.0000
CUG	chr16:67143780-67144054(+)$1	274	1	4	9.0000
CUG	chr16:27371976-27372255(+)$1	279	4	7	9.0000
CUG	chr8:145735316-145735548(+)$1	232	15	18	9.0000
CUG	chr17:37872092-37872299(+)$1	207	8	11	9.0000
CUG	chr14:74764477-74764768(-)$1	291	19	22	9.0000
CUG	chr16:70698355-70698596(-)$1	241	23	26	9.0000
CUG	chr22:50636330-50636578(+)$1	248	0	3	9.0000
CUG	chr15:40632068-40632369(-)$1	301	36	39	9.0000
CUG	chr12:57559879-57560132(+)$1	253	48	51	9.0000
CUG	chr19:10475999-10476242(-)$1	243	0	3	9.0000
CUG	chr14:102548328-102548597(-)$1	269	15	18	9.0000
CUG	chr17:79871633-79871867(-)$1	234	28	31	9.0000
CUG	chr2:71597007-71597275(+)$1	268	39	42	9.0000
CUG	chr16:67914054-67914331(+)$1	277	8	11	9.0000
CUG	chr15:64454105-64454348(-)$1	243	62	65	9.0000
CUG	chr10:51580575-51580853(+)$1	278	16	19	9.0000
CUG	chr19:10250578-10250823(-)$1	245	1	4	9.0000
CUG	chr17:38572536-38572771(-)$1	235	65	68	9.0000
CUG	chr1:15389953-15390205(+)$1	252	5	8	9.0000
CUG	chr21:47570317-47570554(-)$1	237	28	31	9.0000
CUG	chr17:76118575-76118801(-)$1	226	15	18	9.0000
CUG	chr21:34903666-34903923(-)$1	257	79	82	9.0000
CUG	chr5:137909621-137909844(-)$1	223	5	8	9.0000

#otherMatches

#Struct PSSM
YYB	chr7:23385427-23385698(-)$1	271	181	184	9.0000
gg[	chr17:79167576-79167828(-)$1	252	13	16	9.0000
:bb	chr8:145107177-145107425(-)$1	248	41	44	9.0000
EEE	chr7:72398873-72399144(+)$1	271	92	95	9.0000
ccc	chr18:60225867-60226150(+)$1	283	46	49	9.0000
:::	chr7:99048330-99048585(+)$1	255	1	4	9.0000
HHH	chr16:456264-456533(+)$1	269	5	8	9.0000
A{B	chr2:118694129-118694384(-)$1	255	32	35	9.0000
::C	chr19:39926105-39926335(-)$1	230	0	3	9.0000
fff	chr15:43022187-43022452(-)$1	265	3	6	9.0000
GGG	chr2:219532496-219532746(-)$1	250	55	58	9.0000
::c	chr16:89597097-89597394(+)$1	297	86	89	9.0000
fcc	chr1:151337557-151337853(-)$1	296	29	32	9.0000
EEE	chr11:67052347-67052605(+)$1	258	32	35	9.0000
ggg	chr19:7998612-7998834(-)$1	222	110	113	9.0000
FFF	chr2:74732939-74733181(-)$1	242	5	8	9.0000
WWW	chr7:99696504-99696729(-)$1	225	13	16	9.0000
ccc	chr16:89851133-89851379(-)$1	246	39	42	9.0000
d[d	chr16:69363752-69364011(-)$1	259	9	12	9.0000
GG{	chr10:70100964-70101207(+)$1	243	12	15	9.0000
III	chr11:65302744-65303000(+)$1	256	4	7	9.0000
ggg	chr7:45931572-45931808(+)$1	236	45	48	9.0000
KKB	chr20:61594016-61594246(+)$1	230	7	10	9.0000
ggg	chr14:59925431-59925682(-)$1	251	126	129	9.0000
eee	chr3:184070382-184070635(-)$1	253	11	14	9.0000
::C	chr2:120689993-120690260(+)$1	267	0	3	9.0000
ff!	chr11:601570-601852(+)$1	282	152	155	9.0000
e##	chr16:90102890-90103144(+)$1	254	11	14	9.0000
CC{	chr6:30851947-30852246(+)$1	299	2	5	9.0000
fff	chr11:47307903-47308198(+)$1	295	7	10	9.0000
eee	chr12:51092134-51092385(+)$1	251	59	62	9.0000
::e	chr5:457003-457298(+)$1	295	2	5	9.0000
edd	chr16:29819046-29819325(+)$1	279	54	57	9.0000
ggg	chr19:619449-619669(-)$1	220	39	42	9.0000
::g	chr17:4798995-4799265(+)$1	270	11	14	9.0000
ggn	chr10:94452253-94452519(+)$1	266	17	20	9.0000
:::	chr14:24661263-24661485(-)$1	222	6	9	9.0000
$$b	chr16:89627032-89627262(+)$1	230	7	10	9.0000
B{C	chr19:7670251-7670493(+)$1	242	16	19	9.0000
b[f	chr16:87744733-87744959(-)$1	226	2	5	9.0000
EED	chr19:19766489-19766712(-)$1	223	40	43	9.0000
bbp	chr7:6452285-6452548(-)$1	263	59	62	9.0000
cc]	chr16:28855836-28856071(-)$1	235	33	36	9.0000
iii	chr21:47683874-47684115(-)$1	241	23	26	9.0000
cc:	chr19:18273187-18273452(+)$1	265	118	121	9.0000
33d	chr19:804602-804836(+)$1	234	74	77	9.0000
f##	chr19:5592578-5592830(-)$1	252	130	133	9.0000
C{H	chr2:27591453-27591708(-)$1	255	19	22	9.0000
ddf	chr11:61495653-61495914(+)$1	261	47	50	9.0000
HHH	chr16:50100152-50100435(+)$1	283	16	19	9.0000
JJJ	chr3:51994394-51994644(-)$1	250	18	21	9.0000
GGG	chr17:40665934-40666185(+)$1	251	3	6	9.0000
MME	chr14:105219515-105219804(+)$1	289	37	40	9.0000
ddd	chr22:46663868-46664114(+)$1	246	86	89	9.0000
E::	chr16:730617-730870(+)$1	253	13	16	9.0000
ccc	chr14:24687460-24687699(-)$1	239	53	56	9.0000
:::	chr17:40828275-40828527(-)$1	252	3	6	9.0000
FFF	chr17:80019754-80020008(-)$1	254	2	5	9.0000
GGG	chr16:72137924-72138189(+)$1	265	22	25	9.0000
ccc	chr16:67916117-67916380(+)$1	263	11	14	9.0000
ddd	chr17:27446212-27446481(-)$1	269	17	20	9.0000
:::	chr4:152053375-152053620(-)$1	245	50	53	9.0000
:::	chr2:106728963-106729238(-)$1	275	8	11	9.0000
ddd	chr17:4457097-4457340(-)$1	243	18	21	9.0000
dd!	chr4:3214316-3214612(+)$1	296	6	9	9.0000
DDD	chr19:9938949-9939231(+)$1	282	5	8	9.0000
ff:	chr6:161536185-161536452(+)$1	267	42	45	9.0000
CC{	chr20:62680259-62680543(-)$1	284	1	4	9.0000
DDa	chr22:37889950-37890251(-)$1	301	2	5	9.0000
KKH	chr7:5427159-5427385(-)$1	226	28	31	9.0000
DDD	chr16:2110688-2110962(+)$1	274	24	27	9.0000
iii	chr17:27445250-27445513(-)$1	263	31	34	9.0000
GGG	chr16:67143780-67144054(+)$1	274	1	4	9.0000
DDD	chr16:27371976-27372255(+)$1	279	4	7	9.0000
cc[	chr8:145735316-145735548(+)$1	232	15	18	9.0000
MDD	chr17:37872092-37872299(+)$1	207	8	11	9.0000
[dd	chr14:74764477-74764768(-)$1	291	19	22	9.0000
NNE	chr16:70698355-70698596(-)$1	241	23	26	9.0000
:cc	chr22:50636330-50636578(+)$1	248	0	3	9.0000
rrc	chr15:40632068-40632369(-)$1	301	36	39	9.0000
cpp	chr12:57559879-57560132(+)$1	253	48	51	9.0000
:::	chr19:10475999-10476242(-)$1	243	0	3	9.0000
D{F	chr14:102548328-102548597(-)$1	269	15	18	9.0000
:bb	chr17:79871633-79871867(-)$1	234	28	31	9.0000
{CC	chr2:71597007-71597275(+)$1	268	39	42	9.0000
KKC	chr16:67914054-67914331(+)$1	277	8	11	9.0000
hhh	chr15:64454105-64454348(-)$1	243	62	65	9.0000
gg#	chr10:51580575-51580853(+)$1	278	16	19	9.0000
::E	chr19:10250578-10250823(-)$1	245	1	4	9.0000
eed	chr17:38572536-38572771(-)$1	235	65	68	9.0000
##b	chr1:15389953-15390205(+)$1	252	5	8	9.0000
off	chr21:47570317-47570554(-)$1	237	28	31	9.0000
:dd	chr17:76118575-76118801(-)$1	226	15	18	9.0000
EEE	chr21:34903666-34903923(-)$1	257	79	82	9.0000
dll	chr5:137909621-137909844(-)$1	223	5	8	9.0000

#DB
..)	chr7:23385427-23385698(-)$1	1	181	184	9.0000
((.	chr17:79167576-79167828(-)$1	1	13	16	9.0000
.((	chr8:145107177-145107425(-)$1	1	41	44	9.0000
(((	chr7:72398873-72399144(+)$1	1	92	95	9.0000
(((	chr18:60225867-60226150(+)$1	1	46	49	9.0000
...	chr7:99048330-99048585(+)$1	1	1	4	9.0000
(((	chr16:456264-456533(+)$1	1	5	8	9.0000
(.(	chr2:118694129-118694384(-)$1	1	32	35	9.0000
..(	chr19:39926105-39926335(-)$1	1	0	3	9.0000
(((	chr15:43022187-43022452(-)$1	1	3	6	9.0000
(((	chr2:219532496-219532746(-)$1	1	55	58	9.0000
..(	chr16:89597097-89597394(+)$1	1	86	89	9.0000
(((	chr1:151337557-151337853(-)$1	1	29	32	9.0000
(((	chr11:67052347-67052605(+)$1	1	32	35	9.0000
(((	chr19:7998612-7998834(-)$1	1	110	113	9.0000
(((	chr2:74732939-74733181(-)$1	1	5	8	9.0000
...	chr7:99696504-99696729(-)$1	1	13	16	9.0000
(((	chr16:89851133-89851379(-)$1	1	39	42	9.0000
(.(	chr16:69363752-69364011(-)$1	1	9	12	9.0000
((.	chr10:70100964-70101207(+)$1	1	12	15	9.0000
(((	chr11:65302744-65303000(+)$1	1	4	7	9.0000
(((	chr7:45931572-45931808(+)$1	1	45	48	9.0000
..(	chr20:61594016-61594246(+)$1	1	7	10	9.0000
)))	chr14:59925431-59925682(-)$1	1	126	129	9.0000
(((	chr3:184070382-184070635(-)$1	1	11	14	9.0000
..(	chr2:120689993-120690260(+)$1	1	0	3	9.0000
((.	chr11:601570-601852(+)$1	1	152	155	9.0000
(..	chr16:90102890-90103144(+)$1	1	11	14	9.0000
((.	chr6:30851947-30852246(+)$1	1	2	5	9.0000
(((	chr11:47307903-47308198(+)$1	1	7	10	9.0000
(((	chr12:51092134-51092385(+)$1	1	59	62	9.0000
..(	chr5:457003-457298(+)$1	1	2	5	9.0000
)))	chr16:29819046-29819325(+)$1	1	54	57	9.0000
(((	chr19:619449-619669(-)$1	1	39	42	9.0000
..(	chr17:4798995-4799265(+)$1	1	11	14	9.0000
((.	chr10:94452253-94452519(+)$1	1	17	20	9.0000
...	chr14:24661263-24661485(-)$1	1	6	9	9.0000
..(	chr16:89627032-89627262(+)$1	1	7	10	9.0000
(.(	chr19:7670251-7670493(+)$1	1	16	19	9.0000
(.(	chr16:87744733-87744959(-)$1	1	2	5	9.0000
(((	chr19:19766489-19766712(-)$1	1	40	43	9.0000
((.	chr7:6452285-6452548(-)$1	1	59	62	9.0000
)).	chr16:28855836-28856071(-)$1	1	33	36	9.0000
(((	chr21:47683874-47684115(-)$1	1	23	26	9.0000
)).	chr19:18273187-18273452(+)$1	1	118	121	9.0000
..)	chr19:804602-804836(+)$1	1	74	77	9.0000
(..	chr19:5592578-5592830(-)$1	1	130	133	9.0000
(.(	chr2:27591453-27591708(-)$1	1	19	22	9.0000
(((	chr11:61495653-61495914(+)$1	1	47	50	9.0000
(((	chr16:50100152-50100435(+)$1	1	16	19	9.0000
(((	chr3:51994394-51994644(-)$1	1	18	21	9.0000
(((	chr17:40665934-40666185(+)$1	1	3	6	9.0000
..(	chr14:105219515-105219804(+)$1	1	37	40	9.0000
(((	chr22:46663868-46664114(+)$1	1	86	89	9.0000
(..	chr16:730617-730870(+)$1	1	13	16	9.0000
(((	chr14:24687460-24687699(-)$1	1	53	56	9.0000
...	chr17:40828275-40828527(-)$1	1	3	6	9.0000
(((	chr17:80019754-80020008(-)$1	1	2	5	9.0000
(((	chr16:72137924-72138189(+)$1	1	22	25	9.0000
(((	chr16:67916117-67916380(+)$1	1	11	14	9.0000
(((	chr17:27446212-27446481(-)$1	1	17	20	9.0000
...	chr4:152053375-152053620(-)$1	1	50	53	9.0000
...	chr2:106728963-106729238(-)$1	1	8	11	9.0000
)))	chr17:4457097-4457340(-)$1	1	18	21	9.0000
((.	chr4:3214316-3214612(+)$1	1	6	9	9.0000
(((	chr19:9938949-9939231(+)$1	1	5	8	9.0000
)).	chr6:161536185-161536452(+)$1	1	42	45	9.0000
((.	chr20:62680259-62680543(-)$1	1	1	4	9.0000
(((	chr22:37889950-37890251(-)$1	1	2	5	9.0000
..(	chr7:5427159-5427385(-)$1	1	28	31	9.0000
(((	chr16:2110688-2110962(+)$1	1	24	27	9.0000
)))	chr17:27445250-27445513(-)$1	1	31	34	9.0000
(((	chr16:67143780-67144054(+)$1	1	1	4	9.0000
(((	chr16:27371976-27372255(+)$1	1	4	7	9.0000
((.	chr8:145735316-145735548(+)$1	1	15	18	9.0000
.((	chr17:37872092-37872299(+)$1	1	8	11	9.0000
.((	chr14:74764477-74764768(-)$1	1	19	22	9.0000
..(	chr16:70698355-70698596(-)$1	1	23	26	9.0000
.((	chr22:50636330-50636578(+)$1	1	0	3	9.0000
..)	chr15:40632068-40632369(-)$1	1	36	39	9.0000
(..	chr12:57559879-57560132(+)$1	1	48	51	9.0000
...	chr19:10475999-10476242(-)$1	1	0	3	9.0000
(.(	chr14:102548328-102548597(-)$1	1	15	18	9.0000
.((	chr17:79871633-79871867(-)$1	1	28	31	9.0000
.((	chr2:71597007-71597275(+)$1	1	39	42	9.0000
..(	chr16:67914054-67914331(+)$1	1	8	11	9.0000
(((	chr15:64454105-64454348(-)$1	1	62	65	9.0000
((.	chr10:51580575-51580853(+)$1	1	16	19	9.0000
..(	chr19:10250578-10250823(-)$1	1	1	4	9.0000
)))	chr17:38572536-38572771(-)$1	1	65	68	9.0000
..(	chr1:15389953-15390205(+)$1	1	5	8	9.0000
.))	chr21:47570317-47570554(-)$1	1	28	31	9.0000
.((	chr17:76118575-76118801(-)$1	1	15	18	9.0000
(((	chr21:34903666-34903923(-)$1	1	79	82	9.0000
(..	chr5:137909621-137909844(-)$1	1	5	8	9.0000

#PSSM
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	

#score	855.0000000000002
#seq	95
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_CDS_m1_run2.nuc.txt

#NT
CCCCCACUACCCCC	chr12:57919670-57919912(+)$1	242	77	91	21.6874
CCCCCCCCUCCCCC	chr16:67267639-67267940(-)$1	301	81	95	26.2708
ccgcccccaccccc	chr5:175956977-175957206(-)$1	229	68	82	31.2708
CUGCCUCCAGCCCC	chr8:145112451-145112766(-)$1	315	108	122	21.6874
CAUCCCCCGCCCCC	chr5:31526541-31526849(-)$1	308	266	280	23.9791
CCCCCCUCACCCCA	chr11:66034455-66034797(+)$1	342	14	28	21.3749
CAGCCGCCACCCCC	chr3:47452099-47452366(+)$1	267	213	227	24.1874
GCUACCCCACCCCC	chr12:57111369-57111594(-)$1	225	46	60	22.4166
ccucccccagcccc	chr19:36211789-36212175(+)$1	386	320	334	28.2499
CGGCCUCCACCCCC	chr1:33236198-33236428(+)$1	230	67	81	23.9791
CAGCCCCCUGCCCC	chr1:156437929-156438251(-)$1	322	166	180	21.9999
ccgcccccaccucc	chr1:1250896-1251182(-)$1	286	30	44	27.8333
CCACCCCCAACCUC	chr19:2248135-2248404(+)$1	269	235	249	21.7916
CCUCCCCCACCUGC	chr12:7045223-7045511(+)$1	288	110	124	22.7291
CAGCCCCCAGCCCC	chr19:45898701-45899020(-)$1	319	43	57	25.6458
CCAGCCCCACACCC	chr1:153921685-153921961(-)$1	276	187	201	21.2708
cccccuccaccccc	chr17:7750908-7751182(+)$1	274	99	113	26.2708
uccuccccaccccc	chr10:121355848-121356127(-)$1	279	80	94	21.1666
CAGCCCCUACCCCC	chr8:145065377-145065675(+)$1	298	196	210	23.9791
ccuccuccaccucc	chr5:140953500-140953758(-)$1	258	187	201	23.7708
CCUCCCCAUCCCCC	chr6:31500577-31500817(-)$1	240	19	33	22.9374
CCAGCCCCACCUCC	chr16:30732482-30732732(+)$1	250	125	139	22.6249
ccgcccccgccucc	chr19:15355089-15355384(-)$1	295	30	44	23.9791
cagcccccaccccc	chr19:15353972-15354324(-)$1	352	301	315	28.2499
CCACCCCGACCCCC	chr5:175957491-175957749(-)$1	258	174	188	25.7499
gcgcccccagcccu	chr9:140007996-140008294(-)$1	298	29	43	20.1249
CCGACCCCAGCCCC	chr12:49433953-49434175(-)$1	222	32	46	24.4999
CCAGCCCCACCUCC	chr12:57919139-57919446(+)$1	307	245	259	22.6249
CCGCCCCCACCCCC	chr11:68029564-68029858(-)$1	294	246	260	31.2708
ccucccccaccccc	chr19:50154177-50154516(+)$1	339	90	104	30.8541
CCACCCCCACCCCA	chr16:30674014-30674275(+)$1	261	71	85	25.9583
CCCCCACCACCUCC	chr12:7045552-7045813(+)$1	261	201	215	22.5208
ccgccuccAGCCCA	chr16:30748617-30749008(+)$1	391	280	294	20.8541
CUGCCCCCGCCCCC	chr1:8420300-8420569(-)$1	269	39	53	24.0833
CCUCCCCCACCCCC	chr1:33236845-33237136(+)$1	291	245	259	30.8541
CCUCCCCCUCCCCC	chr19:2248294-2248578(+)$1	284	227	241	27.2083
cugcccccaccccc	chr16:28877370-28877658(+)$1	288	96	110	27.9374
CCUCCCCCUCCCCC	chr19:2248438-2248725(+)$1	287	83	97	27.2083
CCACCCUCACCCCC	chr1:27736227-27736480(-)$1	253	0	14	25.7499
ccucccccagcccc	chr19:36212045-36212320(+)$1	275	64	78	28.2499
CCUCCCCAAGCCCC	chr14:55529786-55530035(+)$1	249	65	79	23.9791
CCACCCUCACCCCC	chr1:27736280-27736585(-)$1	305	105	119	25.7499
ccgcccccaccccc	chr14:105174039-105174383(+)$1	344	62	76	31.2708
CCGCCCCCAGCCCU	chr12:49443921-49444169(-)$1	248	109	123	24.3958
CCUCCCCCACCCCC	chr1:33237055-33237317(+)$1	262	35	49	30.8541
CUgcccccaccccc	chr1:16262381-16262647(+)$1	266	75	89	27.9374
GCUCCCCCACCGCC	chr12:48188998-48189346(-)$1	348	311	325	22.5208

#otherMatches

#Struct PSSM
ooooa]dddd333f	chr19:2248007-2248228(+)$1	221	88	102	25.2291
::::::::::::::	chr12:57919670-57919912(+)$1	242	77	91	21.6874
rrrrrrreeeee::	chr16:67267639-67267940(-)$1	301	81	95	26.2708
b:::::::::::::	chr5:175956977-175957206(-)$1	229	68	82	31.2708
oobb333dddd:::	chr8:145112451-145112766(-)$1	315	108	122	21.6874
IIII@@@@@@@@@@	chr5:31526541-31526849(-)$1	308	266	280	23.9791
::::::::::dddd	chr11:66034455-66034797(+)$1	342	14	28	21.3749
::::::::::::::	chr3:47452099-47452366(+)$1	267	213	227	24.1874
::::::::::::::	chr12:57111369-57111594(-)$1	225	46	60	22.4166
:::::::::cccww	chr19:36211789-36212175(+)$1	386	320	334	28.2499
B{FFFFFF{DDDD:	chr1:33236198-33236428(+)$1	230	67	81	23.9791
fffmmmmffffff:	chr1:156437929-156438251(-)$1	322	166	180	21.9999
TTGGGGGGG:::::	chr1:1250896-1251182(-)$1	286	30	44	27.8333
YYFFFFFF\\\\\\	chr19:2248135-2248404(+)$1	269	235	249	21.7916
CCCCCDDDDKKGGG	chr12:7045223-7045511(+)$1	288	110	124	22.7291
::eeeeeaoooooo	chr19:45898701-45899020(-)$1	319	43	57	25.6458
FEEEEE______GG	chr1:153921685-153921961(-)$1	276	187	201	21.2708
wwwwwdddd:::::	chr17:7750908-7751182(+)$1	274	99	113	26.2708
DDLLLDDDDKKA{D	chr10:121355848-121356127(-)$1	279	80	94	21.1666
:gggggggqqqqqq	chr8:145065377-145065675(+)$1	298	196	210	23.9791
::::::::ffffff	chr5:140953500-140953758(-)$1	258	187	201	23.7708
ee####ffffffnn	chr6:31500577-31500817(-)$1	240	19	33	22.9374
ttttttttttbb]e	chr16:30732482-30732732(+)$1	250	125	139	22.6249
eee:::::::::::	chr19:15355089-15355384(-)$1	295	30	44	23.9791
^^^^^^^^^^^^^^	chr19:15353972-15354324(-)$1	352	301	315	28.2499
eeee]dddd00000	chr5:175957491-175957749(-)$1	258	174	188	25.7499
OOOOOOHHHHHHHH	chr9:140007996-140008294(-)$1	298	29	43	20.1249
EEMMMMIIIIIIII	chr12:49433953-49434175(-)$1	222	32	46	24.4999
xxxeeeee999999	chr12:57919139-57919446(+)$1	307	245	259	22.6249
33bb::ddddpppp	chr11:68029564-68029858(-)$1	294	246	260	31.2708
EEEEE:::::::::	chr19:50154177-50154516(+)$1	339	90	104	30.8541
DBBFFFFFFKKCCC	chr16:30674014-30674275(+)$1	261	71	85	25.9583
::::::::::::::	chr12:7045552-7045813(+)$1	261	201	215	22.5208
::EEEEE{GGGGGG	chr16:30748617-30749008(+)$1	391	280	294	20.8541
{A{GGGGGGGLLLH	chr1:8420300-8420569(-)$1	269	39	53	24.0833
::::::::::::ee	chr1:33236845-33237136(+)$1	291	245	259	30.8541
"ccc^^^^^^^^^^	chr19:2248294-2248578(+)$1	284	227	241	27.2083
D{DDDD::bb[fff	chr16:28877370-28877658(+)$1	288	96	110	27.9374
vvvvvvvvdddd44	chr19:2248438-2248725(+)$1	287	83	97	27.2083
::::::::::::::	chr1:27736227-27736480(-)$1	253	0	14	25.7499
vvvvvvvddddccc	chr19:36212045-36212320(+)$1	275	64	78	28.2499
+++++++++eeeee	chr14:55529786-55530035(+)$1	249	65	79	23.9791
^^^^^^^^^^^^^^	chr1:27736280-27736585(-)$1	305	105	119	25.7499
ccdddd::::eeee	chr14:105174039-105174383(+)$1	344	62	76	31.2708
xxxffffff:::::	chr12:49443921-49444169(-)$1	248	109	123	24.3958
::::::::::::ee	chr1:33237055-33237317(+)$1	262	35	49	30.8541
b^^^^^^^^^^^^^	chr1:16262381-16262647(+)$1	266	75	89	27.9374
ffff::ccc!!bb[	chr12:48188998-48189346(-)$1	348	311	325	22.5208

#DB
....).))))...)	chr19:2248007-2248228(+)$1	1	88	102	25.2291
..............	chr12:57919670-57919912(+)$1	1	77	91	21.6874
.......)))))..	chr16:67267639-67267940(-)$1	1	81	95	26.2708
).............	chr5:175956977-175957206(-)$1	1	68	82	31.2708
..))...))))...	chr8:145112451-145112766(-)$1	1	108	122	21.6874
))))..........	chr5:31526541-31526849(-)$1	1	266	280	23.9791
..........((((	chr11:66034455-66034797(+)$1	1	14	28	21.3749
..............	chr3:47452099-47452366(+)$1	1	213	227	24.1874
..............	chr12:57111369-57111594(-)$1	1	46	60	22.4166
.........(((..	chr19:36211789-36212175(+)$1	1	320	334	28.2499
(.((((((.((((.	chr1:33236198-33236428(+)$1	1	67	81	23.9791
(((....)))))).	chr1:156437929-156438251(-)$1	1	166	180	21.9999
..(((((((.....	chr1:1250896-1251182(-)$1	1	30	44	27.8333
..))))))......	chr19:2248135-2248404(+)$1	1	235	249	21.7916
(((((((((..(((	chr12:7045223-7045511(+)$1	1	110	124	22.7291
..((((((......	chr19:45898701-45899020(-)$1	1	43	57	25.6458
))))))......))	chr1:153921685-153921961(-)$1	1	187	201	21.2708
.....)))).....	chr17:7750908-7751182(+)$1	1	99	113	26.2708
((...((((..(.(	chr10:121355848-121356127(-)$1	1	80	94	21.1666
.(((((((......	chr8:145065377-145065675(+)$1	1	196	210	23.9791
........((((((	chr5:140953500-140953758(-)$1	1	187	201	23.7708
((....((((((..	chr6:31500577-31500817(-)$1	1	19	33	22.9374
..........)).)	chr16:30732482-30732732(+)$1	1	125	139	22.6249
)))...........	chr19:15355089-15355384(-)$1	1	30	44	23.9791
..............	chr19:15353972-15354324(-)$1	1	301	315	28.2499
)))).)))).....	chr5:175957491-175957749(-)$1	1	174	188	25.7499
......((((((((	chr9:140007996-140008294(-)$1	1	29	43	20.1249
((....((((((((	chr12:49433953-49434175(-)$1	1	32	46	24.4999
...)))))......	chr12:57919139-57919446(+)$1	1	245	259	22.6249
..))..((((....	chr11:68029564-68029858(-)$1	1	246	260	31.2708
(((((.........	chr19:50154177-50154516(+)$1	1	90	104	30.8541
(((((((((..(((	chr16:30674014-30674275(+)$1	1	71	85	25.9583
..............	chr12:7045552-7045813(+)$1	1	201	215	22.5208
..(((((.((((((	chr16:30748617-30749008(+)$1	1	280	294	20.8541
.(.(((((((...(	chr1:8420300-8420569(-)$1	1	39	53	24.0833
............((	chr1:33236845-33237136(+)$1	1	245	259	30.8541
.(((..........	chr19:2248294-2248578(+)$1	1	227	241	27.2083
(.((((..((.(((	chr16:28877370-28877658(+)$1	1	96	110	27.9374
........))))..	chr19:2248438-2248725(+)$1	1	83	97	27.2083
..............	chr1:27736227-27736480(-)$1	1	0	14	25.7499
.......)))))))	chr19:36212045-36212320(+)$1	1	64	78	28.2499
.........(((((	chr14:55529786-55530035(+)$1	1	65	79	23.9791
..............	chr1:27736280-27736585(-)$1	1	105	119	25.7499
))))))....((((	chr14:105174039-105174383(+)$1	1	62	76	31.2708
...)))))).....	chr12:49443921-49444169(-)$1	1	109	123	24.3958
............((	chr1:33237055-33237317(+)$1	1	35	49	30.8541
(.............	chr1:16262381-16262647(+)$1	1	75	89	27.9374
))))..(((..((.	chr12:48188998-48189346(-)$1	1	311	325	22.5208

#PSSM
C : 0.66	c : 0.25	G : 0.04	u : 0.02	g : 0.02	
C : 0.49	c : 0.25	A : 0.12	U : 0.06	G : 0.02	a : 0.02	u : 0.02	
U : 0.22	G : 0.20	g : 0.18	A : 0.16	C : 0.08	u : 0.08	c : 0.04	
C : 0.58	c : 0.29	G : 0.06	A : 0.04	u : 0.02	
C : 0.68	c : 0.31	
C : 0.58	c : 0.25	u : 0.06	A : 0.04	U : 0.04	G : 0.02	
C : 0.62	c : 0.31	U : 0.06	
C : 0.58	c : 0.31	U : 0.04	A : 0.04	G : 0.02	
A : 0.56	a : 0.27	U : 0.10	G : 0.04	g : 0.02	
C : 0.52	c : 0.22	G : 0.16	g : 0.06	A : 0.02	
C : 0.68	c : 0.29	A : 0.02	
C : 0.60	c : 0.22	U : 0.08	u : 0.06	G : 0.02	
C : 0.66	c : 0.29	U : 0.02	G : 0.02	
C : 0.62	c : 0.27	A : 0.06	u : 0.02	U : 0.02	

#score	1207.0416666666665
#seq	48
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_transcript_m3_run2.nuc.txt

#NT
CAGCC	chr17:78887729-78888003(+)$1	274	73	78	14.9999
CAGCC	chr19:19210131-19210414(+)$1	283	227	232	14.9999
CAGCC	chr19:4066020-4066259(-)$1	239	178	183	14.9999
CAGCC	chr22:49945047-49945306(-)$1	259	209	214	14.9999
CAGCC	chr22:49961744-49962018(-)$1	274	51	56	14.9999
CAGCC	chr16:89040131-89040389(-)$1	258	208	213	14.9999
cagcc	chr19:5080330-5080578(+)$1	248	177	182	14.9999
CAGCC	chr2:3325928-3326169(-)$1	241	128	133	14.9999
cagcc	chr17:78887953-78888181(+)$1	228	138	143	14.9999
CAGCC	chr1:2171654-2171928(+)$1	274	143	148	14.9999
cagcc	chr16:88979250-88979524(-)$1	274	7	12	14.9999
CAGCC	chr22:49969491-49969727(-)$1	236	198	203	14.9999
CAGCC	chr16:89023570-89023830(-)$1	260	34	39	14.9999
CAGCC	chr7:1133725-1133984(-)$1	259	130	135	14.9999
CAGCC	chr7:1138608-1138837(-)$1	229	163	168	14.9999
CAGCC	chr12:54812197-54812500(-)$1	303	264	269	14.9999
cagcc	chr2:236543737-236544010(+)$1	273	91	96	14.9999
CAGCC	chr11:885271-885540(-)$1	269	109	114	14.9999
CAGCC	chr11:63894362-63894626(-)$1	264	177	182	14.9999
CAGCC	chr1:161576581-161576826(+)$1	245	40	45	14.9999
CAGCC	chr2:3476832-3477120(+)$1	288	52	57	14.9999
cagcc	chr19:53224111-53224369(-)$1	258	251	256	14.9999
CAGCC	chr22:49934590-49934846(-)$1	256	18	23	14.9999
CAGCC	chr11:3419704-3419964(+)$1	260	56	61	14.9999
CAGCC	chr13:92000339-92000631(+)$1	292	34	39	14.9999
CAGCC	chr16:89039286-89039547(-)$1	261	31	36	14.9999
CAGCC	chr22:47459198-47459474(+)$1	276	141	146	14.9999
CAGCC	chr22:19880986-19881273(-)$1	287	131	136	14.9999
CAGCC	chr4:1230048-1230289(-)$1	241	147	152	14.9999
CAGCC	chr1:76209791-76210065(+)$1	274	201	206	14.9999
cagcc	chr16:89585154-89585429(+)$1	275	44	49	14.9999
CAGCC	chr5:12795051-12795305(+)$1	254	122	127	14.9999
CAGCC	chr22:49932429-49932683(-)$1	254	244	249	14.9999
CAGCC	chr7:150783178-150783476(+)$1	298	59	64	14.9999
CAGCC	chr4:1229695-1229951(-)$1	256	214	219	14.9999
CAGCC	chrX:153589616-153589848(-)$1	232	127	132	14.9999
cagcc	chr7:614659-614909(-)$1	250	4	9	14.9999
CAGCC	chr9:127108693-127109001(+)$1	308	192	197	14.9999
cagcc	chr16:1366767-1367021(+)$1	254	153	158	14.9999
CAGCC	chr1:161576451-161576704(+)$1	253	43	48	14.9999
CAGCC	chr10:17271170-17271440(-)$1	270	234	239	14.9999
CAGCC	chr3:194350249-194350528(-)$1	279	58	63	14.9999
CAGCC	chr16:89025230-89025487(-)$1	257	56	61	14.9999
CAGCC	chr16:88562597-88562927(+)$1	330	36	41	14.9999
CAGCC	chr20:61279519-61279764(+)$1	245	230	235	14.9999
CAGCC	chr17:76123775-76124079(-)$1	304	14	19	14.9999
CAGCC	chr7:32931169-32931435(-)$1	266	142	147	14.9999
CAGCC	chr22:50033937-50034214(-)$1	277	124	129	14.9999
CAGCC	chr16:85646551-85646819(+)$1	268	28	33	14.9999
CAGCC	chr17:5418126-5418430(-)$1	304	34	39	14.9999
cagcc	chr1:6113254-6113494(+)$1	240	171	176	14.9999
CAGCC	chr8:140850082-140850337(-)$1	255	123	128	14.9999
CAGCC	chr9:133759584-133759817(+)$1	233	59	64	14.9999

#otherMatches

#Struct PSSM
GGGGG	chr16:88576935-88577225(+)$1	290	190	195	14.9999
cc!!e	chr17:78887729-78888003(+)$1	274	73	78	14.9999
GGGGD	chr19:19210131-19210414(+)$1	283	227	232	14.9999
i[ccc	chr19:4066020-4066259(-)$1	239	178	183	14.9999
eeeel	chr22:49945047-49945306(-)$1	259	209	214	14.9999
e22bb	chr22:49961744-49962018(-)$1	274	51	56	14.9999
C}FFF	chr16:89040131-89040389(-)$1	258	208	213	14.9999
YYDDD	chr19:5080330-5080578(+)$1	248	177	182	14.9999
oobb2	chr2:3325928-3326169(-)$1	241	128	133	14.9999
mmbbd	chr17:78887953-78888181(+)$1	228	138	143	14.9999
444dd	chr1:2171654-2171928(+)$1	274	143	148	14.9999
KKBBB	chr16:88979250-88979524(-)$1	274	7	12	14.9999
ddd44	chr22:49969491-49969727(-)$1	236	198	203	14.9999
BKKDD	chr16:89023570-89023830(-)$1	260	34	39	14.9999
c[bbd	chr7:1133725-1133984(-)$1	259	130	135	14.9999
eeedd	chr7:1138608-1138837(-)$1	229	163	168	14.9999
nnnee	chr12:54812197-54812500(-)$1	303	264	269	14.9999
dddd:	chr2:236543737-236544010(+)$1	273	91	96	14.9999
H::hh	chr11:885271-885540(-)$1	269	109	114	14.9999
fffff	chr11:63894362-63894626(-)$1	264	177	182	14.9999
hh]a4	chr1:161576581-161576826(+)$1	245	40	45	14.9999
ffsss	chr2:3476832-3477120(+)$1	288	52	57	14.9999
EEEEE	chr19:53224111-53224369(-)$1	258	251	256	14.9999
ddnnn	chr22:49934590-49934846(-)$1	256	18	23	14.9999
fffff	chr11:3419704-3419964(+)$1	260	56	61	14.9999
lllff	chr13:92000339-92000631(+)$1	292	34	39	14.9999
!!ccc	chr16:89039286-89039547(-)$1	261	31	36	14.9999
22ddd	chr22:47459198-47459474(+)$1	276	141	146	14.9999
dddd]	chr22:19880986-19881273(-)$1	287	131	136	14.9999
[eeee	chr4:1230048-1230289(-)$1	241	147	152	14.9999
2cccd	chr1:76209791-76210065(+)$1	274	201	206	14.9999
fffff	chr16:89585154-89585429(+)$1	275	44	49	14.9999
hh:::	chr5:12795051-12795305(+)$1	254	122	127	14.9999
::DDD	chr22:49932429-49932683(-)$1	254	244	249	14.9999
a22bb	chr7:150783178-150783476(+)$1	298	59	64	14.9999
ppppp	chr4:1229695-1229951(-)$1	256	214	219	14.9999
g22bb	chrX:153589616-153589848(-)$1	232	127	132	14.9999
cmmmm	chr7:614659-614909(-)$1	250	4	9	14.9999
EEEEE	chr9:127108693-127109001(+)$1	308	192	197	14.9999
c:ccc	chr16:1366767-1367021(+)$1	254	153	158	14.9999
d22ab	chr1:161576451-161576704(+)$1	253	43	48	14.9999
ZZEEE	chr10:17271170-17271440(-)$1	270	234	239	14.9999
%%ccc	chr3:194350249-194350528(-)$1	279	58	63	14.9999
iiiii	chr16:89025230-89025487(-)$1	257	56	61	14.9999
KKGGG	chr16:88562597-88562927(+)$1	330	36	41	14.9999
gg]dd	chr20:61279519-61279764(+)$1	245	230	235	14.9999
ppeee	chr17:76123775-76124079(-)$1	304	14	19	14.9999
d22ff	chr7:32931169-32931435(-)$1	266	142	147	14.9999
d]ddd	chr22:50033937-50034214(-)$1	277	124	129	14.9999
LLCCC	chr16:85646551-85646819(+)$1	268	28	33	14.9999
EEEEE	chr17:5418126-5418430(-)$1	304	34	39	14.9999
cpppp	chr1:6113254-6113494(+)$1	240	171	176	14.9999
EE}BB	chr8:140850082-140850337(-)$1	255	123	128	14.9999
dddd3	chr9:133759584-133759817(+)$1	233	59	64	14.9999

#DB
)))))	chr16:88576935-88577225(+)$1	1	190	195	14.9999
((..(	chr17:78887729-78888003(+)$1	1	73	78	14.9999
)))))	chr19:19210131-19210414(+)$1	1	227	232	14.9999
(.(((	chr19:4066020-4066259(-)$1	1	178	183	14.9999
((((.	chr22:49945047-49945306(-)$1	1	209	214	14.9999
)..))	chr22:49961744-49962018(-)$1	1	51	56	14.9999
).)))	chr16:89040131-89040389(-)$1	1	208	213	14.9999
..)))	chr19:5080330-5080578(+)$1	1	177	182	14.9999
..)).	chr2:3325928-3326169(-)$1	1	128	133	14.9999
..)))	chr17:78887953-78888181(+)$1	1	138	143	14.9999
...))	chr1:2171654-2171928(+)$1	1	143	148	14.9999
..(((	chr16:88979250-88979524(-)$1	1	7	12	14.9999
)))..	chr22:49969491-49969727(-)$1	1	198	203	14.9999
(..((	chr16:89023570-89023830(-)$1	1	34	39	14.9999
(.(((	chr7:1133725-1133984(-)$1	1	130	135	14.9999
(((((	chr7:1138608-1138837(-)$1	1	163	168	14.9999
...))	chr12:54812197-54812500(-)$1	1	264	269	14.9999
)))).	chr2:236543737-236544010(+)$1	1	91	96	14.9999
(..((	chr11:885271-885540(-)$1	1	109	114	14.9999
)))))	chr11:63894362-63894626(-)$1	1	177	182	14.9999
)).).	chr1:161576581-161576826(+)$1	1	40	45	14.9999
((...	chr2:3476832-3477120(+)$1	1	52	57	14.9999
)))))	chr19:53224111-53224369(-)$1	1	251	256	14.9999
((...	chr22:49934590-49934846(-)$1	1	18	23	14.9999
)))))	chr11:3419704-3419964(+)$1	1	56	61	14.9999
...))	chr13:92000339-92000631(+)$1	1	34	39	14.9999
..(((	chr16:89039286-89039547(-)$1	1	31	36	14.9999
..)))	chr22:47459198-47459474(+)$1	1	141	146	14.9999
)))).	chr22:19880986-19881273(-)$1	1	131	136	14.9999
.((((	chr4:1230048-1230289(-)$1	1	147	152	14.9999
.))))	chr1:76209791-76210065(+)$1	1	201	206	14.9999
(((((	chr16:89585154-89585429(+)$1	1	44	49	14.9999
))...	chr5:12795051-12795305(+)$1	1	122	127	14.9999
..)))	chr22:49932429-49932683(-)$1	1	244	249	14.9999
)..))	chr7:150783178-150783476(+)$1	1	59	64	14.9999
.....	chr4:1229695-1229951(-)$1	1	214	219	14.9999
)..))	chrX:153589616-153589848(-)$1	1	127	132	14.9999
(....	chr7:614659-614909(-)$1	1	4	9	14.9999
(((((	chr9:127108693-127109001(+)$1	1	192	197	14.9999
).(((	chr16:1366767-1367021(+)$1	1	153	158	14.9999
)..))	chr1:161576451-161576704(+)$1	1	43	48	14.9999
..)))	chr10:17271170-17271440(-)$1	1	234	239	14.9999
..(((	chr3:194350249-194350528(-)$1	1	58	63	14.9999
)))))	chr16:89025230-89025487(-)$1	1	56	61	14.9999
..(((	chr16:88562597-88562927(+)$1	1	36	41	14.9999
)).))	chr20:61279519-61279764(+)$1	1	230	235	14.9999
..)))	chr17:76123775-76124079(-)$1	1	14	19	14.9999
)..))	chr7:32931169-32931435(-)$1	1	142	147	14.9999
).)))	chr22:50033937-50034214(-)$1	1	124	129	14.9999
..(((	chr16:85646551-85646819(+)$1	1	28	33	14.9999
(((((	chr17:5418126-5418430(-)$1	1	34	39	14.9999
(....	chr1:6113254-6113494(+)$1	1	171	176	14.9999
)).))	chr8:140850082-140850337(-)$1	1	123	128	14.9999
)))).	chr9:133759584-133759817(+)$1	1	59	64	14.9999

#PSSM
C : 0.83	c : 0.16	
A : 0.83	a : 0.16	
G : 0.83	g : 0.16	
C : 0.83	c : 0.16	
C : 0.83	c : 0.16	

#score	809.9999999999999
#seq	54
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF324PNB_SSB_transcript_m3_run2.nuc.txt

#NT
CUG	chr16:88788074-88788316(-)$1	242	8	11	9.0000
cug	chr6:16267237-16267456(+)$1	219	13	16	9.0000
CUG	chr16:28883233-28883440(+)$1	207	104	107	9.0000
CUG	chr11:65743938-65744182(+)$1	244	31	34	9.0000
CUG	chr5:109035388-109035595(-)$1	207	13	16	9.0000
CUG	chr17:7480095-7480361(+)$1	266	8	11	9.0000
CUG	chr17:74557643-74557862(+)$1	219	214	217	9.0000
CUG	chr19:33667913-33668145(+)$1	232	39	42	9.0000
CUG	chr16:70571821-70572105(+)$1	284	90	93	9.0000
CUG	chr19:2427273-2427488(-)$1	215	5	8	9.0000
CUG	chr12:49722738-49722983(+)$1	245	2	5	9.0000
CUG	chr6:31802963-31803166(+)$1	203	12	15	9.0000
CUG	chr14:90178792-90179074(+)$1	282	13	16	9.0000
CUG	chr19:10220854-10221065(+)$1	211	2	5	9.0000
CUG	chr5:135416132-135416339(-)$1	207	101	104	9.0000
CUG	chr6:31802978-31803200(+)$1	222	97	100	9.0000
CUG	chr11:64022988-64023232(+)$1	244	0	3	9.0000
CUG	chr3:49928687-49928928(-)$1	241	20	23	9.0000
CUG	chr1:31440942-31441177(-)$1	235	21	24	9.0000
CUG	chr17:75085288-75085527(+)$1	239	105	108	9.0000
CUG	chr14:20811327-20811534(-)$1	207	0	3	9.0000
CUG	chr9:35657837-35658049(-)$1	212	16	19	9.0000
CUG	chr16:28883203-28883406(+)$1	203	134	137	9.0000
CUG	chr6:26988058-26988281(+)$1	223	32	35	9.0000
CUG	chr16:71792225-71792452(-)$1	227	54	57	9.0000
CUG	chr6:86386947-86387186(-)$1	239	43	46	9.0000
CUG	chr1:22149953-22150209(-)$1	256	37	40	9.0000
CUG	chr3:160232646-160232893(-)$1	247	30	33	9.0000
CUG	chr14:20811340-20811544(-)$1	204	10	13	9.0000
CUG	chr5:140090786-140090995(+)$1	209	76	79	9.0000
CUg	chr15:79152827-79153041(+)$1	214	74	77	9.0000
CUG	chr11:46783885-46784101(-)$1	216	190	193	9.0000
cug	chr17:18965274-18965546(+)$1	272	2	5	9.0000
CUG	chr5:140098444-140098657(+)$1	213	63	66	9.0000
CUG	chr6:27599141-27599364(+)$1	223	23	26	9.0000
CUG	chr14:20811427-20811645(-)$1	218	53	56	9.0000
CUG	chr3:45730423-45730653(-)$1	230	44	47	9.0000
cug	chr6:31499511-31499800(-)$1	289	43	46	9.0000
CUG	chr17:73029893-73030179(+)$1	286	35	38	9.0000
CUG	chr11:46783868-46784084(-)$1	216	173	176	9.0000
CUG	chr5:140090795-140091039(+)$1	244	67	70	9.0000
CUG	chr17:74557094-74557301(+)$1	207	56	59	9.0000
CUG	chr14:20811400-20811612(-)$1	212	20	23	9.0000
CUG	chr2:27273540-27273783(+)$1	243	29	32	9.0000
CUG	chr16:28883206-28883413(+)$1	207	131	134	9.0000
CUG	chr15:45490680-45490945(-)$1	265	4	7	9.0000
CUG	chr9:35657871-35658107(-)$1	236	74	77	9.0000
CUG	chr16:28883213-28883433(+)$1	220	124	127	9.0000
CUG	chr17:7480028-7480277(+)$1	249	7	10	9.0000
CUG	chr19:2427288-2427512(-)$1	224	29	32	9.0000
CUG	chr14:20811368-20811578(-)$1	210	44	47	9.0000
cug	chr7:139025410-139025623(+)$1	213	100	103	9.0000
CUG	chr20:2443541-2443764(-)$1	223	79	82	9.0000
CUG	chr1:45242062-45242335(+)$1	273	152	155	9.0000
CUG	chr19:45981761-45981980(-)$1	219	12	15	9.0000
CUG	chr17:73559156-73559402(+)$1	246	223	226	9.0000
CUG	chr9:35657820-35658022(-)$1	202	15	18	9.0000
CUG	chr20:17943479-17943691(-)$1	212	59	62	9.0000
CUG	chr11:46783901-46784105(-)$1	204	194	197	9.0000
CUG	chr1:94313094-94313323(+)$1	229	17	20	9.0000
CUG	chr5:55593304-55593541(-)$1	237	17	20	9.0000
CUG	chr19:47247406-47247654(-)$1	248	50	53	9.0000
CUG	chr20:49225000-49225249(-)$1	249	42	45	9.0000
cug	chr8:144624224-144624462(+)$1	238	70	73	9.0000
CUG	chr14:20811335-20811537(-)$1	202	3	6	9.0000
CUG	chr14:20811323-20811527(-)$1	204	129	132	9.0000
CUG	chr11:10822967-10823189(-)$1	222	79	82	9.0000
CUG	chr19:24187163-24187408(-)$1	245	3	6	9.0000
CUG	chr2:86362978-86363198(+)$1	220	18	21	9.0000
CUg	chr7:101503687-101503965(+)$1	278	65	68	9.0000
CUG	chr15:89878216-89878495(+)$1	279	31	34	9.0000
CUG	chr8:67025493-67025737(+)$1	244	2	5	9.0000
CUG	chrX:135961325-135961534(-)$1	209	66	69	9.0000
CUG	chr14:20811347-20811550(-)$1	203	16	19	9.0000
cug	chr11:17097303-17097510(-)$1	207	22	25	9.0000
CUG	chr3:47451224-47451479(+)$1	255	14	17	9.0000
cug	chr6:27599176-27599396(+)$1	220	109	112	9.0000
CUG	chr17:75085333-75085563(+)$1	230	60	63	9.0000
CUG	chr13:114018184-114018437(-)$1	253	38	41	9.0000
CUG	chr20:47897125-47897329(+)$1	204	6	9	9.0000
CUG	chr5:140105659-140105890(+)$1	231	81	84	9.0000
CUG	chr16:50100112-50100325(+)$1	213	3	6	9.0000
CUG	chr12:54797543-54797795(-)$1	252	0	3	9.0000
CUG	chr14:20811378-20811600(-)$1	222	8	11	9.0000
CUG	chr14:21865361-21865612(-)$1	251	15	18	9.0000
CUG	chr16:50100080-50100312(+)$1	232	18	21	9.0000
CUG	chr1:173835361-173835582(-)$1	221	55	58	9.0000
CUG	chr16:1365024-1365299(+)$1	275	161	164	9.0000
CUG	chr8:67025537-67025807(+)$1	270	2	5	9.0000
CUG	chr12:6619586-6619797(+)$1	211	11	14	9.0000
CUG	chr9:136217599-136217810(+)$1	211	93	96	9.0000
cug	chr22:23547931-23548185(+)$1	254	110	113	9.0000
CUG	chr14:20811361-20811568(-)$1	207	34	37	9.0000
cug	chr22:22050387-22050635(+)$1	248	10	13	9.0000

#otherMatches

#Struct PSSM
DD:	chr19:49534839-49535143(-)$1	304	2	5	9.0000
g[b	chr16:88788074-88788316(-)$1	242	8	11	9.0000
:::	chr6:16267237-16267456(+)$1	219	13	16	9.0000
eee	chr16:28883233-28883440(+)$1	207	104	107	9.0000
gg[	chr11:65743938-65744182(+)$1	244	31	34	9.0000
DDD	chr5:109035388-109035595(-)$1	207	13	16	9.0000
CCE	chr17:7480095-7480361(+)$1	266	8	11	9.0000
ggg	chr17:74557643-74557862(+)$1	219	214	217	9.0000
CC{	chr19:33667913-33668145(+)$1	232	39	42	9.0000
E:e	chr16:70571821-70572105(+)$1	284	90	93	9.0000
DDL	chr19:2427273-2427488(-)$1	215	5	8	9.0000
HHH	chr12:49722738-49722983(+)$1	245	2	5	9.0000
GGG	chr6:31802963-31803166(+)$1	203	12	15	9.0000
hh#	chr14:90178792-90179074(+)$1	282	13	16	9.0000
eee	chr19:10220854-10221065(+)$1	211	2	5	9.0000
rrd	chr5:135416132-135416339(-)$1	207	101	104	9.0000
[dd	chr6:31802978-31803200(+)$1	222	97	100	9.0000
:::	chr11:64022988-64023232(+)$1	244	0	3	9.0000
CCC	chr3:49928687-49928928(-)$1	241	20	23	9.0000
FFF	chr1:31440942-31441177(-)$1	235	21	24	9.0000
d[c	chr17:75085288-75085527(+)$1	239	105	108	9.0000
::C	chr14:20811327-20811534(-)$1	207	0	3	9.0000
:BB	chr9:35657837-35658049(-)$1	212	16	19	9.0000
""e	chr16:28883203-28883406(+)$1	203	134	137	9.0000
cc]	chr6:26988058-26988281(+)$1	223	32	35	9.0000
iii	chr16:71792225-71792452(-)$1	227	54	57	9.0000
c[b	chr6:86386947-86387186(-)$1	239	43	46	9.0000
ff2	chr1:22149953-22150209(-)$1	256	37	40	9.0000
ccc	chr3:160232646-160232893(-)$1	247	30	33	9.0000
ccC	chr14:20811340-20811544(-)$1	204	10	13	9.0000
fff	chr5:140090786-140090995(+)$1	209	76	79	9.0000
III	chr15:79152827-79153041(+)$1	214	74	77	9.0000
YYE	chr11:46783885-46784101(-)$1	216	190	193	9.0000
CCC	chr17:18965274-18965546(+)$1	272	2	5	9.0000
hhh	chr5:140098444-140098657(+)$1	213	63	66	9.0000
ccc	chr6:27599141-27599364(+)$1	223	23	26	9.0000
HHH	chr14:20811427-20811645(-)$1	218	53	56	9.0000
bbn	chr3:45730423-45730653(-)$1	230	44	47	9.0000
===	chr6:31499511-31499800(-)$1	289	43	46	9.0000
nnn	chr17:73029893-73030179(+)$1	286	35	38	9.0000
:ee	chr11:46783868-46784084(-)$1	216	173	176	9.0000
GGG	chr5:140090795-140091039(+)$1	244	67	70	9.0000
eee	chr17:74557094-74557301(+)$1	207	56	59	9.0000
HHH	chr14:20811400-20811612(-)$1	212	20	23	9.0000
GGG	chr2:27273540-27273783(+)$1	243	29	32	9.0000
""e	chr16:28883206-28883413(+)$1	207	131	134	9.0000
FFF	chr15:45490680-45490945(-)$1	265	4	7	9.0000
ooc	chr9:35657871-35658107(-)$1	236	74	77	9.0000
eee	chr16:28883213-28883433(+)$1	220	124	127	9.0000
!dd	chr17:7480028-7480277(+)$1	249	7	10	9.0000
ccc	chr19:2427288-2427512(-)$1	224	29	32	9.0000
!!e	chr14:20811368-20811578(-)$1	210	44	47	9.0000
GGG	chr7:139025410-139025623(+)$1	213	100	103	9.0000
hhh	chr20:2443541-2443764(-)$1	223	79	82	9.0000
666	chr1:45242062-45242335(+)$1	273	152	155	9.0000
iii	chr19:45981761-45981980(-)$1	219	12	15	9.0000
HHH	chr17:73559156-73559402(+)$1	246	223	226	9.0000
$$$	chr9:35657820-35658022(-)$1	202	15	18	9.0000
fff	chr20:17943479-17943691(-)$1	212	59	62	9.0000
YYE	chr11:46783901-46784105(-)$1	204	194	197	9.0000
iii	chr1:94313094-94313323(+)$1	229	17	20	9.0000
PPP	chr5:55593304-55593541(-)$1	237	17	20	9.0000
EEE	chr19:47247406-47247654(-)$1	248	50	53	9.0000
ccr	chr20:49225000-49225249(-)$1	249	42	45	9.0000
+++	chr8:144624224-144624462(+)$1	238	70	73	9.0000
::C	chr14:20811335-20811537(-)$1	202	3	6	9.0000
&&e	chr14:20811323-20811527(-)$1	204	129	132	9.0000
fff	chr11:10822967-10823189(-)$1	222	79	82	9.0000
:::	chr19:24187163-24187408(-)$1	245	3	6	9.0000
FFK	chr2:86362978-86363198(+)$1	220	18	21	9.0000
===	chr7:101503687-101503965(+)$1	278	65	68	9.0000
B{F	chr15:89878216-89878495(+)$1	279	31	34	9.0000
:dd	chr8:67025493-67025737(+)$1	244	2	5	9.0000
ggg	chrX:135961325-135961534(-)$1	209	66	69	9.0000
B{D	chr14:20811347-20811550(-)$1	203	16	19	9.0000
[ii	chr11:17097303-17097510(-)$1	207	22	25	9.0000
JJJ	chr3:47451224-47451479(+)$1	255	14	17	9.0000
JJJ	chr6:27599176-27599396(+)$1	220	109	112	9.0000
d[c	chr17:75085333-75085563(+)$1	230	60	63	9.0000
f[c	chr13:114018184-114018437(-)$1	253	38	41	9.0000
HHH	chr20:47897125-47897329(+)$1	204	6	9	9.0000
hhh	chr5:140105659-140105890(+)$1	231	81	84	9.0000
HHH	chr16:50100112-50100325(+)$1	213	3	6	9.0000
::F	chr12:54797543-54797795(-)$1	252	0	3	9.0000
::B	chr14:20811378-20811600(-)$1	222	8	11	9.0000
DDD	chr14:21865361-21865612(-)$1	251	15	18	9.0000
eee	chr16:50100080-50100312(+)$1	232	18	21	9.0000
cc:	chr1:173835361-173835582(-)$1	221	55	58	9.0000
eee	chr16:1365024-1365299(+)$1	275	161	164	9.0000
CII	chr8:67025537-67025807(+)$1	270	2	5	9.0000
:::	chr12:6619586-6619797(+)$1	211	11	14	9.0000
WWW	chr9:136217599-136217810(+)$1	211	93	96	9.0000
ffC	chr22:23547931-23548185(+)$1	254	110	113	9.0000
!!e	chr14:20811361-20811568(-)$1	207	34	37	9.0000
DDD	chr22:22050387-22050635(+)$1	248	10	13	9.0000

#DB
((.	chr19:49534839-49535143(-)$1	1	2	5	9.0000
(.(	chr16:88788074-88788316(-)$1	1	8	11	9.0000
...	chr6:16267237-16267456(+)$1	1	13	16	9.0000
)))	chr16:28883233-28883440(+)$1	1	104	107	9.0000
((.	chr11:65743938-65744182(+)$1	1	31	34	9.0000
(((	chr5:109035388-109035595(-)$1	1	13	16	9.0000
(((	chr17:7480095-7480361(+)$1	1	8	11	9.0000
)))	chr17:74557643-74557862(+)$1	1	214	217	9.0000
((.	chr19:33667913-33668145(+)$1	1	39	42	9.0000
(.(	chr16:70571821-70572105(+)$1	1	90	93	9.0000
((.	chr19:2427273-2427488(-)$1	1	5	8	9.0000
(((	chr12:49722738-49722983(+)$1	1	2	5	9.0000
(((	chr6:31802963-31803166(+)$1	1	12	15	9.0000
((.	chr14:90178792-90179074(+)$1	1	13	16	9.0000
(((	chr19:10220854-10221065(+)$1	1	2	5	9.0000
..)	chr5:135416132-135416339(-)$1	1	101	104	9.0000
.((	chr6:31802978-31803200(+)$1	1	97	100	9.0000
...	chr11:64022988-64023232(+)$1	1	0	3	9.0000
(((	chr3:49928687-49928928(-)$1	1	20	23	9.0000
(((	chr1:31440942-31441177(-)$1	1	21	24	9.0000
(.(	chr17:75085288-75085527(+)$1	1	105	108	9.0000
..(	chr14:20811327-20811534(-)$1	1	0	3	9.0000
.((	chr9:35657837-35658049(-)$1	1	16	19	9.0000
..(	chr16:28883203-28883406(+)$1	1	134	137	9.0000
)).	chr6:26988058-26988281(+)$1	1	32	35	9.0000
(((	chr16:71792225-71792452(-)$1	1	54	57	9.0000
(.(	chr6:86386947-86387186(-)$1	1	43	46	9.0000
)).	chr1:22149953-22150209(-)$1	1	37	40	9.0000
(((	chr3:160232646-160232893(-)$1	1	30	33	9.0000
))(	chr14:20811340-20811544(-)$1	1	10	13	9.0000
(((	chr5:140090786-140090995(+)$1	1	76	79	9.0000
(((	chr15:79152827-79153041(+)$1	1	74	77	9.0000
..)	chr11:46783885-46784101(-)$1	1	190	193	9.0000
(((	chr17:18965274-18965546(+)$1	1	2	5	9.0000
(((	chr5:140098444-140098657(+)$1	1	63	66	9.0000
)))	chr6:27599141-27599364(+)$1	1	23	26	9.0000
(((	chr14:20811427-20811645(-)$1	1	53	56	9.0000
((.	chr3:45730423-45730653(-)$1	1	44	47	9.0000
(((	chr6:31499511-31499800(-)$1	1	43	46	9.0000
...	chr17:73029893-73030179(+)$1	1	35	38	9.0000
.((	chr11:46783868-46784084(-)$1	1	173	176	9.0000
(((	chr5:140090795-140091039(+)$1	1	67	70	9.0000
(((	chr17:74557094-74557301(+)$1	1	56	59	9.0000
(((	chr14:20811400-20811612(-)$1	1	20	23	9.0000
(((	chr2:27273540-27273783(+)$1	1	29	32	9.0000
..(	chr16:28883206-28883413(+)$1	1	131	134	9.0000
(((	chr15:45490680-45490945(-)$1	1	4	7	9.0000
..)	chr9:35657871-35658107(-)$1	1	74	77	9.0000
)))	chr16:28883213-28883433(+)$1	1	124	127	9.0000
.((	chr17:7480028-7480277(+)$1	1	7	10	9.0000
(((	chr19:2427288-2427512(-)$1	1	29	32	9.0000
..(	chr14:20811368-20811578(-)$1	1	44	47	9.0000
)))	chr7:139025410-139025623(+)$1	1	100	103	9.0000
(((	chr20:2443541-2443764(-)$1	1	79	82	9.0000
...	chr1:45242062-45242335(+)$1	1	152	155	9.0000
(((	chr19:45981761-45981980(-)$1	1	12	15	9.0000
)))	chr17:73559156-73559402(+)$1	1	223	226	9.0000
...	chr9:35657820-35658022(-)$1	1	15	18	9.0000
)))	chr20:17943479-17943691(-)$1	1	59	62	9.0000
..)	chr11:46783901-46784105(-)$1	1	194	197	9.0000
(((	chr1:94313094-94313323(+)$1	1	17	20	9.0000
...	chr5:55593304-55593541(-)$1	1	17	20	9.0000
(((	chr19:47247406-47247654(-)$1	1	50	53	9.0000
((.	chr20:49225000-49225249(-)$1	1	42	45	9.0000
...	chr8:144624224-144624462(+)$1	1	70	73	9.0000
..(	chr14:20811335-20811537(-)$1	1	3	6	9.0000
..(	chr14:20811323-20811527(-)$1	1	129	132	9.0000
(((	chr11:10822967-10823189(-)$1	1	79	82	9.0000
...	chr19:24187163-24187408(-)$1	1	3	6	9.0000
((.	chr2:86362978-86363198(+)$1	1	18	21	9.0000
(((	chr7:101503687-101503965(+)$1	1	65	68	9.0000
(.(	chr15:89878216-89878495(+)$1	1	31	34	9.0000
.((	chr8:67025493-67025737(+)$1	1	2	5	9.0000
(((	chrX:135961325-135961534(-)$1	1	66	69	9.0000
(.(	chr14:20811347-20811550(-)$1	1	16	19	9.0000
.((	chr11:17097303-17097510(-)$1	1	22	25	9.0000
(((	chr3:47451224-47451479(+)$1	1	14	17	9.0000
)))	chr6:27599176-27599396(+)$1	1	109	112	9.0000
(.(	chr17:75085333-75085563(+)$1	1	60	63	9.0000
(.(	chr13:114018184-114018437(-)$1	1	38	41	9.0000
(((	chr20:47897125-47897329(+)$1	1	6	9	9.0000
(((	chr5:140105659-140105890(+)$1	1	81	84	9.0000
(((	chr16:50100112-50100325(+)$1	1	3	6	9.0000
..(	chr12:54797543-54797795(-)$1	1	0	3	9.0000
..(	chr14:20811378-20811600(-)$1	1	8	11	9.0000
(((	chr14:21865361-21865612(-)$1	1	15	18	9.0000
(((	chr16:50100080-50100312(+)$1	1	18	21	9.0000
)).	chr1:173835361-173835582(-)$1	1	55	58	9.0000
)))	chr16:1365024-1365299(+)$1	1	161	164	9.0000
(((	chr8:67025537-67025807(+)$1	1	2	5	9.0000
...	chr12:6619586-6619797(+)$1	1	11	14	9.0000
...	chr9:136217599-136217810(+)$1	1	93	96	9.0000
))(	chr22:23547931-23548185(+)$1	1	110	113	9.0000
..(	chr14:20811361-20811568(-)$1	1	34	37	9.0000
(((	chr22:22050387-22050635(+)$1	1	10	13	9.0000

#PSSM
C : 0.90	c : 0.09	
U : 0.90	u : 0.09	
G : 0.88	g : 0.11	

#score	855.0000000000001
#seq	95
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_transcript_m1_run1.nuc.txt

#NT
gcgugggggcggggggAG	chr14:23770302-23770573(-)$1	271	98	116	27.0769
CUGUGGAGGGGGCAGGGG	chr20:44992788-44993066(-)$1	278	208	226	21.1153
GCGGGGUGGAGGCAGGGU	chr20:36013266-36013584(+)$1	318	170	188	18.7115
guguggggcgggcagggc	chr4:1332430-1332750(+)$1	320	149	167	21.8846
UGGUGGGGGUGGUAGGAA	chr11:65192435-65192641(+)$1	206	52	70	22.8461
ggguggguguggauggau	chr14:105357317-105357578(+)$1	261	10	28	19.5769
GGGUGGGGGAGGGGGCCC	chr1:154977623-154977895(+)$1	272	42	60	22.7499
ACGAGGGCGUGGGAGGCG	chr4:2935870-2936139(-)$1	269	167	185	19.1923
GCGGGGUGGGGGGAGGGG	chr19:12832708-12832963(-)$1	255	86	104	23.8076
GGGUGGGGGUGGGGGGGC	chr19:1105798-1106035(+)$1	237	42	60	30.4423
GUGUGGGAGGGGAGGGCG	chr22:29413919-29414210(+)$1	291	139	157	20.8269
gguuggggguggugggag	chr18:77707430-77707698(-)$1	268	25	43	24.1923
GGGUGGGGGUGGGCGUGG	chr16:28875331-28875625(+)$1	294	15	33	26.5961
UGGUGGGGGGGGCAGGGC	chr7:156399561-156399821(-)$1	260	223	241	24.4807
GAGGUGGGGUGGGGGGCU	chr6:167357777-167358058(-)$1	281	81	99	18.7115
gugggggggugggggggg	chr17:80375993-80376276(-)$1	283	87	105	28.1346
GUGGGGGGGUGCUGGGCG	chr16:30537891-30538181(-)$1	290	58	76	19.3846
ACGUGGGGGUGGGAGGAC	chr4:74123759-74124039(-)$1	280	234	252	24.2884
CUGUGGGAGGGGUGGGUG	chr10:601869-602123(-)$1	254	9	27	17.0769
cgcgggggguggggggcg	chr2:32235525-32235782(-)$1	257	21	39	21.0192
gcguggggaggggagggg	chr3:50253219-50253471(+)$1	252	44	62	26.1153
GGGUCGGGGCGGGAGCCG	chr21:46708245-46708512(+)$1	267	82	100	20.4423
GAGUGGGGGAGGCGGGGC	chr17:75370735-75370969(+)$1	234	93	111	24.7692
gcagggaggugggagGCG	chr19:39959119-39959428(+)$1	309	87	105	19.4807
GGCUGGAGGUGGGAGGGA	chr2:220436163-220436396(-)$1	233	66	84	22.9423
ggguggggguggaagugg	chr6:52419885-52420178(-)$1	293	122	140	26.0192
GGGUGGGGGUAGUCGGGG	chr20:60736013-60736259(+)$1	246	9	27	24.0961
GCGGGGGGAUGGGAGGAG	chr9:136699207-136699451(-)$1	244	63	81	22.9423
gcgugggugugggugggg	chr6:11044383-11044634(-)$1	251	49	67	25.3461
GGGUGGGGGGUGCGGGUG	chr13:115000296-115000565(+)$1	269	89	107	22.0769
GAGUGGGGGCGUUGGGGG	chr7:158379931-158380194(-)$1	263	174	192	21.4038
cuguggcggcggaggggg	chr22:19418921-19419280(-)$1	359	106	124	18.9999
GGGUGGGGGCGGGAGGCC	chr21:47649301-47649625(+)$1	324	33	51	27.5576
UGGUGGAGGUGGCUGGGC	chr4:103748278-103748560(-)$1	282	202	220	20.1538
GUCUGGCGGUUGGAGGGG	chr11:2151879-2152082(-)$1	203	45	63	18.9999
GGGUGGGGGGGGCAGGGA	chr19:44126955-44127219(-)$1	264	91	109	27.1730
GGUUGGGGAUGGUGGGAA	chr16:50631825-50632071(+)$1	246	4	22	17.4615
GGGAGGGGCGGGGAGGCG	chrX:152908910-152909165(+)$1	255	105	123	22.8461
gugcgggggagggaggcc	chr3:136470833-136471096(-)$1	263	212	230	22.7499
GGGUGGGGUGGGCAUGGG	chr5:43291040-43291296(-)$1	256	90	108	20.9230
ggguggggguggguggug	chr9:116918527-116918755(+)$1	228	28	46	28.6153
UGGAGAGGGUGGGUGGGG	chr12:125016626-125016871(-)$1	245	42	60	20.1538
ACGAGGGGGAGGGCGGGC	chr7:2677900-2678145(+)$1	245	84	102	19.6730
CGGUGGGCGUGGGGGGGC	chr11:10315216-10315476(-)$1	260	79	97	22.9423
gaguuggggggggaggac	chr2:216242048-216242280(-)$1	232	82	100	21.3076
GGUUGGGGGAGGGAGGGG	chr5:170815505-170815749(+)$1	244	88	106	27.5576
GGGUGGAGGUGGGGAGGG	chr10:21823265-21823547(+)$1	282	48	66	24.0961
aggggagggagggagggg	chr21:47564157-47564395(-)$1	238	46	64	21.0192
GGCAGGGGGUGGGGGGGG	chr11:58346514-58346902(+)$1	388	64	82	25.5384
gcgggggggAGGGAGGGA	chr5:154134940-154135238(+)$1	298	45	63	24.8653
GAGUgggggcggccgggg	chr3:176914689-176914956(-)$1	267	72	90	25.0576

#otherMatches

#Struct PSSM
ffff:hhhhhhhhccc##	chr13:37494019-37494295(-)$1	276	113	131	25.0576
"ccc####bbpppppppb	chr14:23770302-23770573(-)$1	271	98	116	27.0769
:cccffffff[bb!!bbm	chr20:44992788-44993066(-)$1	278	208	226	21.1153
dddCCC}DDDDZZZEEEE	chr20:36013266-36013584(+)$1	318	170	188	18.7115
c:==========[hhhhh	chr4:1332430-1332750(+)$1	320	149	167	21.8846
mmma]a]a]bb:::::::	chr11:65192435-65192641(+)$1	206	52	70	22.8461
::::bb[a[bb%%%%%%g	chr14:105357317-105357578(+)$1	261	10	28	19.5769
EEEEEEEEEKKBBKKAAD	chr1:154977623-154977895(+)$1	272	42	60	22.7499
qqqqqdddd]ddddDDDD	chr4:2935870-2936139(-)$1	269	167	185	19.1923
:ffffff[ccc!!=====	chr19:12832708-12832963(-)$1	255	86	104	23.8076
FFFFF{EEEEEMMMMGGG	chr19:1105798-1106035(+)$1	237	42	60	30.4423
da]ggggggg22ffffff	chr22:29413919-29414210(+)$1	291	139	157	20.8269
]bb22a:::::BB{AKKC	chr18:77707430-77707698(-)$1	268	25	43	24.1923
{DDDD{Aa[bb[bb"""a	chr16:28875331-28875625(+)$1	294	15	33	26.5961
gnnnnnggggggg:EEEE	chr7:156399561-156399821(-)$1	260	223	241	24.4807
22ccc]eeeeea]ccc]c	chr6:167357777-167358058(-)$1	281	81	99	18.7115
F{A{BB{EEEEE{BBMMM	chr17:80375993-80376276(-)$1	283	87	105	28.1346
bb]hhhhhhhhccc]fff	chr16:30537891-30538181(-)$1	290	58	76	19.3846
dd]a]a]ccc333ccc]b	chr4:74123759-74124039(-)$1	280	234	252	24.2884
bbpppppppbb]eeeee]	chr10:601869-602123(-)$1	254	9	27	17.0769
eeeJJJJJJJJJJJKKA{	chr2:32235525-32235782(-)$1	257	21	39	21.0192
ooooccc:CCCZZZGGGG	chr3:50253219-50253471(+)$1	252	44	62	26.1153
ddddbb[cccmmmmccc]	chr21:46708245-46708512(+)$1	267	82	100	20.4423
::::::ggggggglllgg	chr17:75370735-75370969(+)$1	234	93	111	24.7692
MMMFFFFFF{EEEEEccc	chr19:39959119-39959428(+)$1	309	87	105	19.4807
{DDDDMMMMCCC::::::	chr2:220436163-220436396(-)$1	233	66	84	22.9423
============a!!bb!	chr6:52419885-52420178(-)$1	293	122	140	26.0192
EEEEE:::bb[cccqqqq	chr20:60736013-60736259(+)$1	246	9	27	24.0961
dda]bbeeeee::::ddd	chr9:136699207-136699451(-)$1	244	63	81	22.9423
3adddd[eeeeedddd[b	chr6:11044383-11044634(-)$1	251	49	67	25.3461
ee::eeeee[ggggggg[	chr13:115000296-115000565(+)$1	269	89	107	22.0769
}A}A}CCC}A}BB}A}EE	chr7:158379931-158380194(-)$1	263	174	192	21.4038
EEEE{BBCCC{DDDD{FF	chr22:19418921-19419280(-)$1	359	106	124	18.9999
:::a[gggggggmmmmgg	chr21:47649301-47649625(+)$1	324	33	51	27.5576
AYYCCC}CCC}GGGGGGG	chr4:103748278-103748560(-)$1	282	202	220	20.1538
mmbb]ccc]bb4444a]b	chr11:2151879-2152082(-)$1	203	45	63	18.9999
dd]ccc::BB{GGGGGGG	chr19:44126955-44127219(-)$1	264	91	109	27.1730
dd$$$$$cccqqqqqqqq	chr16:50631825-50632071(+)$1	246	4	22	17.4615
JJJJJJJJJFFFFFFccc	chrX:152908910-152909165(+)$1	255	105	123	22.8461
ffffffssssssssssff	chr3:136470833-136471096(-)$1	263	212	230	22.7499
gg]bb]a]bbdddd]eee	chr5:43291040-43291296(-)$1	256	90	108	20.9230
cc]ccc:bb!!a[ccc[f	chr9:116918527-116918755(+)$1	228	28	46	28.6153
HHHHHHHBB{HHHHHHHH	chr12:125016626-125016871(-)$1	245	42	60	20.1538
cc]ffffff22=======	chr7:2677900-2678145(+)$1	245	84	102	19.6730
EEEEDDDDIIIIIIIIIc	chr11:10315216-10315476(-)$1	260	79	97	22.9423
FF{EEEEEddddnnnnnd	chr2:216242048-216242280(-)$1	232	82	100	21.3076
g]bbbb]bb:::CCC:::	chr5:170815505-170815749(+)$1	244	88	106	27.5576
fffff4444iiiiiiiii	chr10:21823265-21823547(+)$1	282	48	66	24.0961
::::::::::::::::CC	chr21:47564157-47564395(-)$1	238	46	64	21.0192
EEEMMMMEEEEE{A{GGG	chr11:58346514-58346902(+)$1	388	64	82	25.5384
ffffEEEEEYYA}BB}BB	chr5:154134940-154135238(+)$1	298	45	63	24.8653
ooooccc22eeeee:::f	chr3:176914689-176914956(-)$1	267	72	90	25.0576

#DB
)))).(((((((((((..	chr13:37494019-37494295(-)$1	1	113	131	25.0576
.(((....((.......)	chr14:23770302-23770573(-)$1	1	98	116	27.0769
.(((((((((.((..((.	chr20:44992788-44993066(-)$1	1	208	226	21.1153
)))))).))))...))))	chr20:36013266-36013584(+)$1	1	170	188	18.7115
).((((((((((.(((((	chr4:1332430-1332750(+)$1	1	149	167	21.8846
...).).).)).......	chr11:65192435-65192641(+)$1	1	52	70	22.8461
....((.(.((......(	chr14:105357317-105357578(+)$1	1	10	28	19.5769
(((((((((..((..(((	chr1:154977623-154977895(+)$1	1	42	60	22.7499
.....)))).))))))))	chr4:2935870-2936139(-)$1	1	167	185	19.1923
.((((((.(((..(((((	chr19:12832708-12832963(-)$1	1	86	104	23.8076
(((((.(((((....(((	chr19:1105798-1106035(+)$1	1	42	60	30.4423
)).)))))))..))))))	chr22:29413919-29414210(+)$1	1	139	157	20.8269
.))..).....((.(..(	chr18:77707430-77707698(-)$1	1	25	43	24.1923
.((((.((.((.((...(	chr16:28875331-28875625(+)$1	1	15	33	26.5961
(.....))))))).))))	chr7:156399561-156399821(-)$1	1	223	241	24.4807
..))).)))))).))).)	chr6:167357777-167358058(-)$1	1	81	99	18.7115
(.(.((.(((((.((...	chr17:80375993-80376276(-)$1	1	87	105	28.1346
)).))))))))))).)))	chr16:30537891-30538181(-)$1	1	58	76	19.3846
)).).).)))...))).)	chr4:74123759-74124039(-)$1	1	234	252	24.2884
((.......)).))))).	chr10:601869-602123(-)$1	1	9	27	17.0769
)))(((((((((((..(.	chr2:32235525-32235782(-)$1	1	21	39	21.0192
....))).)))...))))	chr3:50253219-50253471(+)$1	1	44	62	26.1153
((((((.(((....))).	chr21:46708245-46708512(+)$1	1	82	100	20.4423
......(((((((...))	chr17:75370735-75370969(+)$1	1	93	111	24.7692
...((((((.((((((((	chr19:39959119-39959428(+)$1	1	87	105	19.4807
.((((....(((......	chr2:220436163-220436396(-)$1	1	66	84	22.9423
(((((((((((((..((.	chr6:52419885-52420178(-)$1	1	122	140	26.0192
(((((...((.(((....	chr20:60736013-60736259(+)$1	1	9	27	24.0961
))).)))))))....(((	chr9:136699207-136699451(-)$1	1	63	81	22.9423
.)((((.(((((((((.(	chr6:11044383-11044634(-)$1	1	49	67	25.3461
))..(((((.(((((((.	chr13:115000296-115000565(+)$1	1	89	107	22.0769
.).).))).).)).).))	chr7:158379931-158380194(-)$1	1	174	192	21.4038
((((.(((((.((((.((	chr22:19418921-19419280(-)$1	1	106	124	18.9999
...(.(((((((....))	chr21:47649301-47649625(+)$1	1	33	51	27.5576
)..))).))).)))))))	chr4:103748278-103748560(-)$1	1	202	220	20.1538
..)).))).))....).)	chr11:2151879-2152082(-)$1	1	45	63	18.9999
)).)))..((.(((((((	chr19:44126955-44127219(-)$1	1	91	109	27.1730
((.....(((........	chr16:50631825-50632071(+)$1	1	4	22	17.4615
)))))))))))))))(((	chrX:152908910-152909165(+)$1	1	105	123	22.8461
((((((..........))	chr3:136470833-136471096(-)$1	1	212	230	22.7499
)).)).).)))))).)))	chr5:43291040-43291296(-)$1	1	90	108	20.9230
)).))).((..(.(((.(	chr9:116918527-116918755(+)$1	1	28	46	28.6153
(((((((((.((((((((	chr12:125016626-125016871(-)$1	1	42	60	20.1538
)).))))))..)))))))	chr7:2677900-2678145(+)$1	1	84	102	19.6730
((((((((((((((((((	chr11:10315216-10315476(-)$1	1	79	97	22.9423
((.(((((((((.....)	chr2:216242048-216242280(-)$1	1	82	100	21.3076
).)))).))...)))...	chr5:170815505-170815749(+)$1	1	88	106	27.5576
)))))....)))))))))	chr10:21823265-21823547(+)$1	1	48	66	24.0961
................((	chr21:47564157-47564395(-)$1	1	46	64	21.0192
(((....(((((.(.(((	chr11:58346514-58346902(+)$1	1	64	82	25.5384
)))))))))..).)).))	chr5:154134940-154135238(+)$1	1	45	63	24.8653
....)))..)))))...(	chr3:176914689-176914956(-)$1	1	72	90	25.0576

#PSSM
G : 0.49	g : 0.24	U : 0.07	C : 0.05	A : 0.05	c : 0.03	a : 0.01	
G : 0.40	C : 0.11	g : 0.11	c : 0.09	U : 0.09	u : 0.07	A : 0.07	a : 0.01	
G : 0.59	g : 0.24	C : 0.05	U : 0.03	u : 0.01	c : 0.01	a : 0.01	
U : 0.49	u : 0.19	G : 0.09	A : 0.09	g : 0.09	c : 0.01	
G : 0.63	g : 0.30	U : 0.01	C : 0.01	u : 0.01	
G : 0.65	g : 0.30	A : 0.01	a : 0.01	
G : 0.53	g : 0.28	A : 0.07	U : 0.03	a : 0.01	c : 0.01	C : 0.01	
G : 0.59	g : 0.28	u : 0.03	C : 0.03	A : 0.03	
G : 0.59	g : 0.28	A : 0.03	c : 0.01	a : 0.01	C : 0.01	U : 0.01	
U : 0.32	G : 0.17	u : 0.15	A : 0.13	c : 0.05	g : 0.05	C : 0.05	a : 0.03	
G : 0.63	g : 0.30	U : 0.03	A : 0.01	
G : 0.65	g : 0.30	C : 0.01	U : 0.01	
G : 0.40	g : 0.19	C : 0.15	U : 0.11	a : 0.05	c : 0.03	A : 0.01	u : 0.01	
A : 0.34	G : 0.24	a : 0.13	g : 0.09	u : 0.05	C : 0.05	U : 0.03	c : 0.01	
G : 0.63	g : 0.30	U : 0.03	A : 0.01	
G : 0.65	g : 0.26	C : 0.03	U : 0.01	u : 0.01	
G : 0.40	C : 0.17	g : 0.15	A : 0.11	a : 0.05	U : 0.03	c : 0.03	u : 0.01	
G : 0.42	g : 0.19	C : 0.17	A : 0.09	c : 0.05	U : 0.03	u : 0.01	

#score	1190.4999999999993
#seq	52
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_transcript_m1_run1.nuc.txt

#NT
GAG	chr16:18482659-18482975(-)$1	316	112	115	9.0000
GAG	chr2:32693571-32693832(+)$1	261	45	48	9.0000
GAG	chr1:156235958-156236204(-)$1	246	41	44	9.0000
GAG	chr3:44487923-44488159(-)$1	236	1	4	9.0000
GAG	chr2:234378606-234378864(+)$1	258	83	86	9.0000
GAG	chr12:26868131-26868340(-)$1	209	22	25	9.0000
GAG	chr5:139838737-139839036(+)$1	299	11	14	9.0000
GAG	chr9:116984402-116984644(+)$1	242	27	30	9.0000
GAG	chr17:16004563-16004822(-)$1	259	46	49	9.0000
GAG	chr2:21255342-21255552(-)$1	210	24	27	9.0000
GAG	chr2:62934120-62934405(+)$1	285	56	59	9.0000
GAG	chrX:70784466-70784703(+)$1	237	6	9	9.0000
GAG	chr12:112757277-112757603(-)$1	326	69	72	9.0000
GAG	chr6:144835738-144835996(+)$1	258	18	21	9.0000
GAG	chr4:187549259-187549501(-)$1	242	187	190	9.0000
GAG	chr6:144806530-144806746(+)$1	216	62	65	9.0000
GAG	chr6:144806548-144806755(+)$1	207	44	47	9.0000
GAG	chr5:1051894-1052174(-)$1	280	1	4	9.0000
GAG	chr1:19486519-19486743(-)$1	224	60	63	9.0000
gag	chr9:117044456-117044665(+)$1	209	12	15	9.0000
GAG	chrX:53707014-53707239(-)$1	225	120	123	9.0000
GAG	chrX:153595963-153596205(-)$1	242	9	12	9.0000
GAG	chr17:40265305-40265581(-)$1	276	14	17	9.0000
GAG	chr6:144811216-144811435(+)$1	219	2	5	9.0000
GAG	chr6:3270921-3271166(-)$1	245	58	61	9.0000
gag	chr1:155100259-155100491(+)$1	232	29	32	9.0000
GAG	chr2:32724513-32724751(+)$1	238	164	167	9.0000
GAG	chr2:61541933-61542183(-)$1	250	20	23	9.0000
GAG	chr4:151770474-151770760(-)$1	286	227	230	9.0000
GAG	chr8:103298548-103298809(-)$1	261	46	49	9.0000
GAG	chr12:120596263-120596505(-)$1	242	0	3	9.0000
GAG	chr21:38570082-38570327(+)$1	245	5	8	9.0000
GAG	chr1:12335829-12336097(+)$1	268	1	4	9.0000
GAG	chr18:74091314-74091565(-)$1	251	59	62	9.0000
gag	chr16:68893686-68893914(+)$1	228	8	11	9.0000
GAG	chr16:58615148-58615443(-)$1	295	125	128	9.0000
GAG	chrX:53630228-53630500(-)$1	272	37	40	9.0000
GAG	chr1:39784054-39784280(+)$1	226	77	80	9.0000
GAG	chr16:70697182-70697427(-)$1	245	47	50	9.0000
GAG	chr2:227662600-227662863(-)$1	263	6	9	9.0000
GAG	chr2:234376968-234377207(+)$1	239	117	120	9.0000
GAG	chr6:56417493-56417764(-)$1	271	54	57	9.0000
GAG	chrX:53710718-53710955(-)$1	237	0	3	9.0000
GAG	chr17:36884635-36884912(+)$1	277	7	10	9.0000
GAG	chr1:19504080-19504336(-)$1	256	148	151	9.0000
GAG	chr4:155511742-155511986(-)$1	244	2	5	9.0000
GAG	chr2:61493035-61493274(-)$1	239	60	63	9.0000
GAG	chr6:144811106-144811312(+)$1	206	112	115	9.0000
GAG	chr1:12343280-12343496(+)$1	216	186	189	9.0000
GAG	chr9:117072794-117073051(+)$1	257	213	216	9.0000
GAG	chr6:144831981-144832189(+)$1	208	121	124	9.0000
GAG	chr2:198257622-198257873(-)$1	251	82	85	9.0000
GAG	chr12:57556164-57556395(+)$1	231	7	10	9.0000
GAG	chr6:3272751-3273022(-)$1	271	49	52	9.0000
gag	chr1:22855290-22855538(+)$1	248	20	23	9.0000
GAG	chr1:39826469-39826761(+)$1	292	39	42	9.0000
GAG	chr1:1322427-1322655(-)$1	228	6	9	9.0000
GAG	chr15:86122104-86122371(+)$1	267	128	131	9.0000
GAG	chr3:66023623-66023881(-)$1	258	6	9	9.0000
GAG	chr1:19483163-19483420(-)$1	257	105	108	9.0000
GAG	chr15:42986394-42986633(+)$1	239	48	51	9.0000
GAG	chr9:117031425-117031649(+)$1	224	13	16	9.0000
GAG	chr10:19616421-19616664(+)$1	243	141	144	9.0000
GAG	chr16:70696765-70697017(-)$1	252	30	33	9.0000
GAG	chr6:3273504-3273747(-)$1	243	13	16	9.0000
GAG	chr15:34817825-34818087(-)$1	262	51	54	9.0000
GAG	chr1:19536472-19536704(-)$1	232	49	52	9.0000
GAG	chr6:56498839-56499157(-)$1	318	56	59	9.0000
GAG	chr11:726964-727214(+)$1	250	5	8	9.0000
GAG	chr17:78319672-78319926(+)$1	254	2	5	9.0000
GAG	chr4:74043046-74043278(-)$1	232	31	34	9.0000
GAG	chr17:74077665-74077948(-)$1	283	7	10	9.0000
GAG	chr11:57075939-57076192(-)$1	253	20	23	9.0000
GAG	chr2:32502998-32503296(+)$1	298	113	116	9.0000
GAG	chr4:79188394-79188686(+)$1	292	5	8	9.0000
GAG	chr17:26961924-26962187(-)$1	263	61	64	9.0000
GAG	chr6:144795719-144795962(+)$1	243	77	80	9.0000
GAG	chr9:712264-712509(+)$1	245	50	53	9.0000
GAG	chr17:29559962-29560267(+)$1	305	87	90	9.0000
GAG	chr12:57522607-57522851(+)$1	244	28	31	9.0000
GAG	chr19:10794355-10794565(+)$1	210	23	26	9.0000
GAG	chr16:2814224-2814487(+)$1	263	13	16	9.0000
GAG	chr10:21823267-21823491(+)$1	224	51	54	9.0000
GAG	chr1:110884622-110884853(+)$1	231	59	62	9.0000
GAG	chr6:3273074-3273339(-)$1	265	15	18	9.0000
GAG	chr4:123868416-123868694(+)$1	278	64	67	9.0000
GAG	chr12:57522482-57522807(+)$1	325	6	9	9.0000
GAG	chr11:108196722-108196979(+)$1	257	114	117	9.0000
GAG	chr7:5402318-5402557(-)$1	239	106	109	9.0000
GAG	chr3:51422654-51422963(+)$1	309	12	15	9.0000
GAG	chr17:35616283-35616517(-)$1	234	30	33	9.0000
GAG	chr16:71961794-71962078(+)$1	284	101	104	9.0000
gag	chr3:53850705-53850942(-)$1	237	39	42	9.0000
GAG	chr9:116981972-116982184(+)$1	212	108	111	9.0000
GAG	chr6:144852225-144852438(+)$1	213	35	38	9.0000
GAG	chr2:198272623-198272837(-)$1	214	4	7	9.0000
GAG	chr11:121415851-121416079(+)$1	228	18	21	9.0000
GAG	chr19:58070943-58071207(-)$1	264	110	113	9.0000
GAG	chr17:27492920-27493209(-)$1	289	22	25	9.0000

#otherMatches

#Struct PSSM
b]e	chr17:73821044-73821291(+)$1	247	18	21	9.0000
d]c	chr16:18482659-18482975(-)$1	316	112	115	9.0000
HHH	chr2:32693571-32693832(+)$1	261	45	48	9.0000
ddd	chr1:156235958-156236204(-)$1	246	41	44	9.0000
:::	chr3:44487923-44488159(-)$1	236	1	4	9.0000
ccc	chr2:234378606-234378864(+)$1	258	83	86	9.0000
EE{	chr12:26868131-26868340(-)$1	209	22	25	9.0000
HHH	chr5:139838737-139839036(+)$1	299	11	14	9.0000
CMM	chr9:116984402-116984644(+)$1	242	27	30	9.0000
!!f	chr17:16004563-16004822(-)$1	259	46	49	9.0000
ndd	chr2:21255342-21255552(-)$1	210	24	27	9.0000
f:i	chr2:62934120-62934405(+)$1	285	56	59	9.0000
EEK	chrX:70784466-70784703(+)$1	237	6	9	9.0000
fff	chr12:112757277-112757603(-)$1	326	69	72	9.0000
fff	chr6:144835738-144835996(+)$1	258	18	21	9.0000
ddd	chr4:187549259-187549501(-)$1	242	187	190	9.0000
dd]	chr6:144806530-144806746(+)$1	216	62	65	9.0000
ooo	chr6:144806548-144806755(+)$1	207	44	47	9.0000
EEE	chr5:1051894-1052174(-)$1	280	1	4	9.0000
eee	chr1:19486519-19486743(-)$1	224	60	63	9.0000
ddq	chr9:117044456-117044665(+)$1	209	12	15	9.0000
mmm	chrX:53707014-53707239(-)$1	225	120	123	9.0000
EEE	chrX:153595963-153596205(-)$1	242	9	12	9.0000
FFF	chr17:40265305-40265581(-)$1	276	14	17	9.0000
FFF	chr6:144811216-144811435(+)$1	219	2	5	9.0000
dd[	chr6:3270921-3271166(-)$1	245	58	61	9.0000
KKD	chr1:155100259-155100491(+)$1	232	29	32	9.0000
eee	chr2:32724513-32724751(+)$1	238	164	167	9.0000
CCC	chr2:61541933-61542183(-)$1	250	20	23	9.0000
GGG	chr4:151770474-151770760(-)$1	286	227	230	9.0000
hhh	chr8:103298548-103298809(-)$1	261	46	49	9.0000
:::	chr12:120596263-120596505(-)$1	242	0	3	9.0000
:::	chr21:38570082-38570327(+)$1	245	5	8	9.0000
===	chr1:12335829-12336097(+)$1	268	1	4	9.0000
dff	chr18:74091314-74091565(-)$1	251	59	62	9.0000
a[e	chr16:68893686-68893914(+)$1	228	8	11	9.0000
ddd	chr16:58615148-58615443(-)$1	295	125	128	9.0000
ccc	chrX:53630228-53630500(-)$1	272	37	40	9.0000
b]f	chr1:39784054-39784280(+)$1	226	77	80	9.0000
EEE	chr16:70697182-70697427(-)$1	245	47	50	9.0000
KKE	chr2:227662600-227662863(-)$1	263	6	9	9.0000
ddd	chr2:234376968-234377207(+)$1	239	117	120	9.0000
AKK	chr6:56417493-56417764(-)$1	271	54	57	9.0000
:::	chrX:53710718-53710955(-)$1	237	0	3	9.0000
GKK	chr17:36884635-36884912(+)$1	277	7	10	9.0000
fff	chr1:19504080-19504336(-)$1	256	148	151	9.0000
JJJ	chr4:155511742-155511986(-)$1	244	2	5	9.0000
[bb	chr2:61493035-61493274(-)$1	239	60	63	9.0000
fff	chr6:144811106-144811312(+)$1	206	112	115	9.0000
DDD	chr1:12343280-12343496(+)$1	216	186	189	9.0000
6a]	chr9:117072794-117073051(+)$1	257	213	216	9.0000
bpp	chr6:144831981-144832189(+)$1	208	121	124	9.0000
ddd	chr2:198257622-198257873(-)$1	251	82	85	9.0000
DDD	chr12:57556164-57556395(+)$1	231	7	10	9.0000
qqq	chr6:3272751-3273022(-)$1	271	49	52	9.0000
EEE	chr1:22855290-22855538(+)$1	248	20	23	9.0000
hhh	chr1:39826469-39826761(+)$1	292	39	42	9.0000
EEE	chr1:1322427-1322655(-)$1	228	6	9	9.0000
::G	chr15:86122104-86122371(+)$1	267	128	131	9.0000
DMM	chr3:66023623-66023881(-)$1	258	6	9	9.0000
:dd	chr1:19483163-19483420(-)$1	257	105	108	9.0000
ccc	chr15:42986394-42986633(+)$1	239	48	51	9.0000
)))	chr9:117031425-117031649(+)$1	224	13	16	9.0000
e22	chr10:19616421-19616664(+)$1	243	141	144	9.0000
bmm	chr16:70696765-70697017(-)$1	252	30	33	9.0000
EII	chr6:3273504-3273747(-)$1	243	13	16	9.0000
c]e	chr15:34817825-34818087(-)$1	262	51	54	9.0000
C{G	chr1:19536472-19536704(-)$1	232	49	52	9.0000
:gg	chr6:56498839-56499157(-)$1	318	56	59	9.0000
ddd	chr11:726964-727214(+)$1	250	5	8	9.0000
EEE	chr17:78319672-78319926(+)$1	254	2	5	9.0000
GGG	chr4:74043046-74043278(-)$1	232	31	34	9.0000
KKC	chr17:74077665-74077948(-)$1	283	7	10	9.0000
e::	chr11:57075939-57076192(-)$1	253	20	23	9.0000
ddd	chr2:32502998-32503296(+)$1	298	113	116	9.0000
[dd	chr4:79188394-79188686(+)$1	292	5	8	9.0000
EEE	chr17:26961924-26962187(-)$1	263	61	64	9.0000
::e	chr6:144795719-144795962(+)$1	243	77	80	9.0000
ggg	chr9:712264-712509(+)$1	245	50	53	9.0000
fff	chr17:29559962-29560267(+)$1	305	87	90	9.0000
EEE	chr12:57522607-57522851(+)$1	244	28	31	9.0000
JJJ	chr19:10794355-10794565(+)$1	210	23	26	9.0000
ggg	chr16:2814224-2814487(+)$1	263	13	16	9.0000
444	chr10:21823267-21823491(+)$1	224	51	54	9.0000
eee	chr1:110884622-110884853(+)$1	231	59	62	9.0000
!!b	chr6:3273074-3273339(-)$1	265	15	18	9.0000
:::	chr4:123868416-123868694(+)$1	278	64	67	9.0000
DD:	chr12:57522482-57522807(+)$1	325	6	9	9.0000
mcc	chr11:108196722-108196979(+)$1	257	114	117	9.0000
!!h	chr7:5402318-5402557(-)$1	239	106	109	9.0000
BBc	chr3:51422654-51422963(+)$1	309	12	15	9.0000
fff	chr17:35616283-35616517(-)$1	234	30	33	9.0000
[bb	chr16:71961794-71962078(+)$1	284	101	104	9.0000
lll	chr3:53850705-53850942(-)$1	237	39	42	9.0000
"ee	chr9:116981972-116982184(+)$1	212	108	111	9.0000
22a	chr6:144852225-144852438(+)$1	213	35	38	9.0000
:::	chr2:198272623-198272837(-)$1	214	4	7	9.0000
:::	chr11:121415851-121416079(+)$1	228	18	21	9.0000
lee	chr19:58070943-58071207(-)$1	264	110	113	9.0000
{EE	chr17:27492920-27493209(-)$1	289	22	25	9.0000

#DB
).)	chr17:73821044-73821291(+)$1	1	18	21	9.0000
).)	chr16:18482659-18482975(-)$1	1	112	115	9.0000
(((	chr2:32693571-32693832(+)$1	1	45	48	9.0000
)))	chr1:156235958-156236204(-)$1	1	41	44	9.0000
...	chr3:44487923-44488159(-)$1	1	1	4	9.0000
(((	chr2:234378606-234378864(+)$1	1	83	86	9.0000
((.	chr12:26868131-26868340(-)$1	1	22	25	9.0000
(((	chr5:139838737-139839036(+)$1	1	11	14	9.0000
(..	chr9:116984402-116984644(+)$1	1	27	30	9.0000
..(	chr17:16004563-16004822(-)$1	1	46	49	9.0000
.))	chr2:21255342-21255552(-)$1	1	24	27	9.0000
).(	chr2:62934120-62934405(+)$1	1	56	59	9.0000
((.	chrX:70784466-70784703(+)$1	1	6	9	9.0000
)))	chr12:112757277-112757603(-)$1	1	69	72	9.0000
(((	chr6:144835738-144835996(+)$1	1	18	21	9.0000
)))	chr4:187549259-187549501(-)$1	1	187	190	9.0000
)).	chr6:144806530-144806746(+)$1	1	62	65	9.0000
...	chr6:144806548-144806755(+)$1	1	44	47	9.0000
(((	chr5:1051894-1052174(-)$1	1	1	4	9.0000
)))	chr1:19486519-19486743(-)$1	1	60	63	9.0000
((.	chr9:117044456-117044665(+)$1	1	12	15	9.0000
...	chrX:53707014-53707239(-)$1	1	120	123	9.0000
(((	chrX:153595963-153596205(-)$1	1	9	12	9.0000
(((	chr17:40265305-40265581(-)$1	1	14	17	9.0000
(((	chr6:144811216-144811435(+)$1	1	2	5	9.0000
((.	chr6:3270921-3271166(-)$1	1	58	61	9.0000
..(	chr1:155100259-155100491(+)$1	1	29	32	9.0000
)))	chr2:32724513-32724751(+)$1	1	164	167	9.0000
(((	chr2:61541933-61542183(-)$1	1	20	23	9.0000
)))	chr4:151770474-151770760(-)$1	1	227	230	9.0000
)))	chr8:103298548-103298809(-)$1	1	46	49	9.0000
...	chr12:120596263-120596505(-)$1	1	0	3	9.0000
...	chr21:38570082-38570327(+)$1	1	5	8	9.0000
(((	chr1:12335829-12336097(+)$1	1	1	4	9.0000
(((	chr18:74091314-74091565(-)$1	1	59	62	9.0000
(.(	chr16:68893686-68893914(+)$1	1	8	11	9.0000
(((	chr16:58615148-58615443(-)$1	1	125	128	9.0000
(((	chrX:53630228-53630500(-)$1	1	37	40	9.0000
).)	chr1:39784054-39784280(+)$1	1	77	80	9.0000
(((	chr16:70697182-70697427(-)$1	1	47	50	9.0000
..(	chr2:227662600-227662863(-)$1	1	6	9	9.0000
(((	chr2:234376968-234377207(+)$1	1	117	120	9.0000
(..	chr6:56417493-56417764(-)$1	1	54	57	9.0000
...	chrX:53710718-53710955(-)$1	1	0	3	9.0000
(..	chr17:36884635-36884912(+)$1	1	7	10	9.0000
(((	chr1:19504080-19504336(-)$1	1	148	151	9.0000
(((	chr4:155511742-155511986(-)$1	1	2	5	9.0000
.((	chr2:61493035-61493274(-)$1	1	60	63	9.0000
)))	chr6:144811106-144811312(+)$1	1	112	115	9.0000
)))	chr1:12343280-12343496(+)$1	1	186	189	9.0000
.).	chr9:117072794-117073051(+)$1	1	213	216	9.0000
(..	chr6:144831981-144832189(+)$1	1	121	124	9.0000
(((	chr2:198257622-198257873(-)$1	1	82	85	9.0000
(((	chr12:57556164-57556395(+)$1	1	7	10	9.0000
...	chr6:3272751-3273022(-)$1	1	49	52	9.0000
(((	chr1:22855290-22855538(+)$1	1	20	23	9.0000
)))	chr1:39826469-39826761(+)$1	1	39	42	9.0000
(((	chr1:1322427-1322655(-)$1	1	6	9	9.0000
..(	chr15:86122104-86122371(+)$1	1	128	131	9.0000
(..	chr3:66023623-66023881(-)$1	1	6	9	9.0000
.((	chr1:19483163-19483420(-)$1	1	105	108	9.0000
(((	chr15:42986394-42986633(+)$1	1	48	51	9.0000
...	chr9:117031425-117031649(+)$1	1	13	16	9.0000
)..	chr10:19616421-19616664(+)$1	1	141	144	9.0000
(..	chr16:70696765-70697017(-)$1	1	30	33	9.0000
(((	chr6:3273504-3273747(-)$1	1	13	16	9.0000
).)	chr15:34817825-34818087(-)$1	1	51	54	9.0000
(.(	chr1:19536472-19536704(-)$1	1	49	52	9.0000
.((	chr6:56498839-56499157(-)$1	1	56	59	9.0000
(((	chr11:726964-727214(+)$1	1	5	8	9.0000
(((	chr17:78319672-78319926(+)$1	1	2	5	9.0000
(((	chr4:74043046-74043278(-)$1	1	31	34	9.0000
..(	chr17:74077665-74077948(-)$1	1	7	10	9.0000
)..	chr11:57075939-57076192(-)$1	1	20	23	9.0000
)))	chr2:32502998-32503296(+)$1	1	113	116	9.0000
.((	chr4:79188394-79188686(+)$1	1	5	8	9.0000
(((	chr17:26961924-26962187(-)$1	1	61	64	9.0000
..(	chr6:144795719-144795962(+)$1	1	77	80	9.0000
)))	chr9:712264-712509(+)$1	1	50	53	9.0000
(((	chr17:29559962-29560267(+)$1	1	87	90	9.0000
(((	chr12:57522607-57522851(+)$1	1	28	31	9.0000
(((	chr19:10794355-10794565(+)$1	1	23	26	9.0000
(((	chr16:2814224-2814487(+)$1	1	13	16	9.0000
...	chr10:21823267-21823491(+)$1	1	51	54	9.0000
)))	chr1:110884622-110884853(+)$1	1	59	62	9.0000
..(	chr6:3273074-3273339(-)$1	1	15	18	9.0000
...	chr4:123868416-123868694(+)$1	1	64	67	9.0000
((.	chr12:57522482-57522807(+)$1	1	6	9	9.0000
.))	chr11:108196722-108196979(+)$1	1	114	117	9.0000
..(	chr7:5402318-5402557(-)$1	1	106	109	9.0000
(((	chr3:51422654-51422963(+)$1	1	12	15	9.0000
(((	chr17:35616283-35616517(-)$1	1	30	33	9.0000
.((	chr16:71961794-71962078(+)$1	1	101	104	9.0000
...	chr3:53850705-53850942(-)$1	1	39	42	9.0000
.((	chr9:116981972-116982184(+)$1	1	108	111	9.0000
..)	chr6:144852225-144852438(+)$1	1	35	38	9.0000
...	chr2:198272623-198272837(-)$1	1	4	7	9.0000
...	chr11:121415851-121416079(+)$1	1	18	21	9.0000
.))	chr19:58070943-58071207(-)$1	1	110	113	9.0000
.((	chr17:27492920-27493209(-)$1	1	22	25	9.0000

#PSSM
G : 0.95	g : 0.05	
A : 0.95	a : 0.05	
G : 0.95	g : 0.05	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_transcript_m2_run1.nuc.txt

#NT
UUUG	chr17:7126862-7127122(+)$1	260	59	63	12.0000
UUUG	chr12:4796003-4796415(+)$1	412	48	52	12.0000
UUUG	chr12:6978162-6978369(+)$1	207	167	171	12.0000
UUUG	chr6:150117467-150117733(+)$1	266	39	43	12.0000
UUUG	chr20:34215224-34215434(-)$1	210	167	171	12.0000
UUUG	chr17:57756717-57756964(+)$1	247	41	45	12.0000
UUUG	chr2:96963341-96963558(-)$1	217	71	75	12.0000
UUUG	chr1:220279182-220279462(+)$1	280	4	8	12.0000
UUUG	chr5:179263348-179263649(+)$1	301	250	254	12.0000
UUUG	chr5:151179347-151179647(+)$1	300	8	12	12.0000
UUUG	chr19:39191154-39191381(+)$1	227	67	71	12.0000
UUUG	chr17:40489352-40489610(-)$1	258	32	36	12.0000
UUUG	chr2:232319847-232320079(-)$1	232	58	62	12.0000
UUUG	chr1:171514516-171514759(+)$1	243	52	56	12.0000
UUUG	chr5:43295786-43296098(-)$1	312	111	115	12.0000
UUUG	chr11:57574286-57574514(+)$1	228	93	97	12.0000
UUUG	chr10:124806623-124806855(+)$1	232	88	92	12.0000
UUUG	chr14:94526658-94526933(-)$1	275	20	24	12.0000
UUUG	chr2:98264437-98264675(+)$1	238	51	55	12.0000
UUUG	chr1:156713870-156714120(-)$1	250	236	240	12.0000
UUUG	chr10:85904565-85904828(+)$1	263	67	71	12.0000
UUUG	chr9:140137521-140137770(+)$1	249	28	32	12.0000
UUUG	chr17:78109762-78110029(-)$1	267	145	149	12.0000
UUUG	chr6:33169476-33169710(+)$1	234	84	88	12.0000
UUUG	chr14:35778068-35778302(+)$1	234	30	34	12.0000
UUUG	chr14:21827542-21827776(-)$1	234	20	24	12.0000
UUUG	chr7:98574508-98574794(+)$1	286	40	44	12.0000
UUUG	chr2:48025954-48026221(+)$1	267	175	179	12.0000
UUUG	chr21:35281290-35281560(-)$1	270	0	4	12.0000
UUUG	chr2:74596124-74596349(-)$1	225	80	84	12.0000
UUUG	chr10:74234895-74235154(-)$1	259	83	87	12.0000
UUUG	chrX:108911254-108911501(-)$1	247	238	242	12.0000
UUUG	chr2:96951948-96952176(-)$1	228	27	31	12.0000
UUUG	chr17:80044850-80045075(-)$1	225	72	76	12.0000
UUUG	chr19:56171780-56172072(+)$1	292	165	169	12.0000
UUUG	chr4:57318088-57318318(+)$1	230	48	52	12.0000
UUUG	chr19:36633710-36633932(+)$1	222	215	219	12.0000
UUUG	chr3:58415754-58416016(-)$1	262	25	29	12.0000
UUUG	chr14:94517601-94517857(-)$1	256	31	35	12.0000
UUUG	chr7:99690623-99690857(-)$1	234	62	66	12.0000
UUUG	chr5:177634061-177634321(+)$1	260	13	17	12.0000
UUUG	chrX:53629429-53629670(-)$1	241	25	29	12.0000
UUUG	chr1:23636965-23637267(-)$1	302	23	27	12.0000
UUUG	chr2:74592919-74593146(-)$1	227	66	70	12.0000
UUUG	chr19:34890011-34890314(+)$1	303	244	248	12.0000
UUUG	chr18:56033170-56033562(+)$1	392	44	48	12.0000
UUUG	chr1:156280682-156280957(-)$1	275	265	269	12.0000
UUUG	chr17:40049307-40049527(-)$1	220	88	92	12.0000
UUUG	chr16:3725279-3725498(-)$1	219	86	90	12.0000
uuug	chr15:59465842-59466152(-)$1	310	274	278	12.0000
UUUG	chr12:6978437-6978654(+)$1	217	138	142	12.0000
UUUG	chr2:73471043-73471270(+)$1	227	36	40	12.0000
UUUG	chr17:73036086-73036359(-)$1	273	12	16	12.0000
UUUG	chr3:139092139-139092355(-)$1	216	41	45	12.0000
UUUG	chr2:54856120-54856346(+)$1	226	18	22	12.0000
UUUG	chr12:57032064-57032306(-)$1	242	206	210	12.0000
UUUG	chr4:76714803-76715060(+)$1	257	32	36	12.0000
UUUG	chr11:62298729-62298969(-)$1	240	132	136	12.0000
UUUG	chr1:38435001-38435237(-)$1	236	33	37	12.0000
UUUG	chr11:63756025-63756314(+)$1	289	23	27	12.0000
UUUG	chr16:29814745-29815032(+)$1	287	189	193	12.0000
UUUG	chr16:21973983-21974277(+)$1	294	62	66	12.0000
UUUG	chr4:2909388-2909672(+)$1	284	132	136	12.0000
UUUG	chr1:215793550-215793924(+)$1	374	115	119	12.0000
UUUG	chr1:64117239-64117483(+)$1	244	167	171	12.0000
UUUG	chr18:3253130-3253386(+)$1	256	19	23	12.0000
UUUG	chr16:28855974-28856212(-)$1	238	134	138	12.0000
UUUG	chr17:47484090-47484316(-)$1	226	181	185	12.0000
UUUG	chr10:99190251-99190511(+)$1	260	176	180	12.0000
UUUG	chr14:39530868-39531084(-)$1	216	51	55	12.0000
UUUG	chr5:151180280-151180531(+)$1	251	93	97	12.0000
UUUG	chr15:72501073-72501306(-)$1	233	199	203	12.0000
UUUG	chr1:45980481-45980723(-)$1	242	21	25	12.0000
UUUG	chr2:73478348-73478603(+)$1	255	164	168	12.0000
UUUG	chr11:61098958-61099249(-)$1	291	27	31	12.0000
UUUG	chr17:35479358-35479648(-)$1	290	24	28	12.0000
UUUG	chr19:46318629-46318877(-)$1	248	135	139	12.0000
UUUG	chr1:154573730-154574082(-)$1	352	26	30	12.0000
UUUG	chr17:36916693-36916937(+)$1	244	55	59	12.0000
UUUG	chr22:42032419-42032632(+)$1	213	77	81	12.0000

#otherMatches

#Struct PSSM
mmme	chr10:105199404-105199653(+)$1	249	62	66	12.0000
dddd	chr17:7126862-7127122(+)$1	260	59	63	12.0000
III:	chr12:4796003-4796415(+)$1	412	48	52	12.0000
HHHH	chr12:6978162-6978369(+)$1	207	167	171	12.0000
HHHe	chr6:150117467-150117733(+)$1	266	39	43	12.0000
:DDD	chr20:34215224-34215434(-)$1	210	167	171	12.0000
e!!b	chr17:57756717-57756964(+)$1	247	41	45	12.0000
hhhh	chr2:96963341-96963558(-)$1	217	71	75	12.0000
HHHH	chr1:220279182-220279462(+)$1	280	4	8	12.0000
___B	chr5:179263348-179263649(+)$1	301	250	254	12.0000
:::C	chr5:151179347-151179647(+)$1	300	8	12	12.0000
ffff	chr19:39191154-39191381(+)$1	227	67	71	12.0000
ee]b	chr17:40489352-40489610(-)$1	258	32	36	12.0000
::::	chr2:232319847-232320079(-)$1	232	58	62	12.0000
333e	chr1:171514516-171514759(+)$1	243	52	56	12.0000
d[bb	chr5:43295786-43296098(-)$1	312	111	115	12.0000
iiii	chr11:57574286-57574514(+)$1	228	93	97	12.0000
]ddd	chr10:124806623-124806855(+)$1	232	88	92	12.0000
GGG:	chr14:94526658-94526933(-)$1	275	20	24	12.0000
gggg	chr2:98264437-98264675(+)$1	238	51	55	12.0000
HHHH	chr1:156713870-156714120(-)$1	250	236	240	12.0000
ffff	chr10:85904565-85904828(+)$1	263	67	71	12.0000
fffq	chr9:140137521-140137770(+)$1	249	28	32	12.0000
ccmm	chr17:78109762-78110029(-)$1	267	145	149	12.0000
^^^^	chr6:33169476-33169710(+)$1	234	84	88	12.0000
GG::	chr14:35778068-35778302(+)$1	234	30	34	12.0000
ppcc	chr14:21827542-21827776(-)$1	234	20	24	12.0000
b22f	chr7:98574508-98574794(+)$1	286	40	44	12.0000
GGGG	chr2:48025954-48026221(+)$1	267	175	179	12.0000
::::	chr21:35281290-35281560(-)$1	270	0	4	12.0000
fff!	chr2:74596124-74596349(-)$1	225	80	84	12.0000
::cc	chr10:74234895-74235154(-)$1	259	83	87	12.0000
FFFY	chrX:108911254-108911501(-)$1	247	238	242	12.0000
mddd	chr2:96951948-96952176(-)$1	228	27	31	12.0000
llle	chr17:80044850-80045075(-)$1	225	72	76	12.0000
JJJJ	chr19:56171780-56172072(+)$1	292	165	169	12.0000
eee[	chr4:57318088-57318318(+)$1	230	48	52	12.0000
EE::	chr19:36633710-36633932(+)$1	222	215	219	12.0000
GGGG	chr3:58415754-58416016(-)$1	262	25	29	12.0000
ggg"	chr14:94517601-94517857(-)$1	256	31	35	12.0000
ffff	chr7:99690623-99690857(-)$1	234	62	66	12.0000
qqqe	chr5:177634061-177634321(+)$1	260	13	17	12.0000
HHHH	chrX:53629429-53629670(-)$1	241	25	29	12.0000
ffff	chr1:23636965-23637267(-)$1	302	23	27	12.0000
cc$$	chr2:74592919-74593146(-)$1	227	66	70	12.0000
nnnn	chr19:34890011-34890314(+)$1	303	244	248	12.0000
:::E	chr18:56033170-56033562(+)$1	392	44	48	12.0000
EE}D	chr1:156280682-156280957(-)$1	275	265	269	12.0000
eee[	chr17:40049307-40049527(-)$1	220	88	92	12.0000
gggg	chr16:3725279-3725498(-)$1	219	86	90	12.0000
ooob	chr15:59465842-59466152(-)$1	310	274	278	12.0000
c]cc	chr12:6978437-6978654(+)$1	217	138	142	12.0000
GGGG	chr2:73471043-73471270(+)$1	227	36	40	12.0000
eeee	chr17:73036086-73036359(-)$1	273	12	16	12.0000
oggg	chr3:139092139-139092355(-)$1	216	41	45	12.0000
f:::	chr2:54856120-54856346(+)$1	226	18	22	12.0000
BB??	chr12:57032064-57032306(-)$1	242	206	210	12.0000
:::d	chr4:76714803-76715060(+)$1	257	32	36	12.0000
qqqq	chr11:62298729-62298969(-)$1	240	132	136	12.0000
pppd	chr1:38435001-38435237(-)$1	236	33	37	12.0000
HHHH	chr11:63756025-63756314(+)$1	289	23	27	12.0000
occc	chr16:29814745-29815032(+)$1	287	189	193	12.0000
::::	chr16:21973983-21974277(+)$1	294	62	66	12.0000
::ee	chr4:2909388-2909672(+)$1	284	132	136	12.0000
DDDD	chr1:215793550-215793924(+)$1	374	115	119	12.0000
FFFF	chr1:64117239-64117483(+)$1	244	167	171	12.0000
GGGG	chr18:3253130-3253386(+)$1	256	19	23	12.0000
eee]	chr16:28855974-28856212(-)$1	238	134	138	12.0000
~~~E	chr17:47484090-47484316(-)$1	226	181	185	12.0000
22ee	chr10:99190251-99190511(+)$1	260	176	180	12.0000
JJJJ	chr14:39530868-39531084(-)$1	216	51	55	12.0000
::::	chr5:151180280-151180531(+)$1	251	93	97	12.0000
::::	chr15:72501073-72501306(-)$1	233	199	203	12.0000
mddd	chr1:45980481-45980723(-)$1	242	21	25	12.0000
GGGG	chr2:73478348-73478603(+)$1	255	164	168	12.0000
:===	chr11:61098958-61099249(-)$1	291	27	31	12.0000
reee	chr17:35479358-35479648(-)$1	290	24	28	12.0000
dd[d	chr19:46318629-46318877(-)$1	248	135	139	12.0000
IIII	chr1:154573730-154574082(-)$1	352	26	30	12.0000
::dd	chr17:36916693-36916937(+)$1	244	55	59	12.0000
d22d	chr22:42032419-42032632(+)$1	213	77	81	12.0000

#DB
...)	chr10:105199404-105199653(+)$1	1	62	66	12.0000
))))	chr17:7126862-7127122(+)$1	1	59	63	12.0000
(((.	chr12:4796003-4796415(+)$1	1	48	52	12.0000
))))	chr12:6978162-6978369(+)$1	1	167	171	12.0000
((((	chr6:150117467-150117733(+)$1	1	39	43	12.0000
.)))	chr20:34215224-34215434(-)$1	1	167	171	12.0000
(..(	chr17:57756717-57756964(+)$1	1	41	45	12.0000
))))	chr2:96963341-96963558(-)$1	1	71	75	12.0000
((((	chr1:220279182-220279462(+)$1	1	4	8	12.0000
...)	chr5:179263348-179263649(+)$1	1	250	254	12.0000
...(	chr5:151179347-151179647(+)$1	1	8	12	12.0000
((((	chr19:39191154-39191381(+)$1	1	67	71	12.0000
)).)	chr17:40489352-40489610(-)$1	1	32	36	12.0000
....	chr2:232319847-232320079(-)$1	1	58	62	12.0000
...)	chr1:171514516-171514759(+)$1	1	52	56	12.0000
(.((	chr5:43295786-43296098(-)$1	1	111	115	12.0000
((((	chr11:57574286-57574514(+)$1	1	93	97	12.0000
.)))	chr10:124806623-124806855(+)$1	1	88	92	12.0000
(((.	chr14:94526658-94526933(-)$1	1	20	24	12.0000
((((	chr2:98264437-98264675(+)$1	1	51	55	12.0000
))))	chr1:156713870-156714120(-)$1	1	236	240	12.0000
))))	chr10:85904565-85904828(+)$1	1	67	71	12.0000
(((.	chr9:140137521-140137770(+)$1	1	28	32	12.0000
((..	chr17:78109762-78110029(-)$1	1	145	149	12.0000
....	chr6:33169476-33169710(+)$1	1	84	88	12.0000
((..	chr14:35778068-35778302(+)$1	1	30	34	12.0000
..))	chr14:21827542-21827776(-)$1	1	20	24	12.0000
)..)	chr7:98574508-98574794(+)$1	1	40	44	12.0000
))))	chr2:48025954-48026221(+)$1	1	175	179	12.0000
....	chr21:35281290-35281560(-)$1	1	0	4	12.0000
(((.	chr2:74596124-74596349(-)$1	1	80	84	12.0000
..((	chr10:74234895-74235154(-)$1	1	83	87	12.0000
))).	chrX:108911254-108911501(-)$1	1	238	242	12.0000
.)))	chr2:96951948-96952176(-)$1	1	27	31	12.0000
...)	chr17:80044850-80045075(-)$1	1	72	76	12.0000
((((	chr19:56171780-56172072(+)$1	1	165	169	12.0000
(((.	chr4:57318088-57318318(+)$1	1	48	52	12.0000
))..	chr19:36633710-36633932(+)$1	1	215	219	12.0000
((((	chr3:58415754-58416016(-)$1	1	25	29	12.0000
(((.	chr14:94517601-94517857(-)$1	1	31	35	12.0000
))))	chr7:99690623-99690857(-)$1	1	62	66	12.0000
...)	chr5:177634061-177634321(+)$1	1	13	17	12.0000
((((	chrX:53629429-53629670(-)$1	1	25	29	12.0000
))))	chr1:23636965-23637267(-)$1	1	23	27	12.0000
((..	chr2:74592919-74593146(-)$1	1	66	70	12.0000
....	chr19:34890011-34890314(+)$1	1	244	248	12.0000
...(	chr18:56033170-56033562(+)$1	1	44	48	12.0000
)).)	chr1:156280682-156280957(-)$1	1	265	269	12.0000
(((.	chr17:40049307-40049527(-)$1	1	88	92	12.0000
((((	chr16:3725279-3725498(-)$1	1	86	90	12.0000
...)	chr15:59465842-59466152(-)$1	1	274	278	12.0000
).))	chr12:6978437-6978654(+)$1	1	138	142	12.0000
((((	chr2:73471043-73471270(+)$1	1	36	40	12.0000
((((	chr17:73036086-73036359(-)$1	1	12	16	12.0000
.)))	chr3:139092139-139092355(-)$1	1	41	45	12.0000
)...	chr2:54856120-54856346(+)$1	1	18	22	12.0000
))..	chr12:57032064-57032306(-)$1	1	206	210	12.0000
...(	chr4:76714803-76715060(+)$1	1	32	36	12.0000
....	chr11:62298729-62298969(-)$1	1	132	136	12.0000
...)	chr1:38435001-38435237(-)$1	1	33	37	12.0000
((((	chr11:63756025-63756314(+)$1	1	23	27	12.0000
.)))	chr16:29814745-29815032(+)$1	1	189	193	12.0000
....	chr16:21973983-21974277(+)$1	1	62	66	12.0000
..((	chr4:2909388-2909672(+)$1	1	132	136	12.0000
((((	chr1:215793550-215793924(+)$1	1	115	119	12.0000
))))	chr1:64117239-64117483(+)$1	1	167	171	12.0000
((((	chr18:3253130-3253386(+)$1	1	19	23	12.0000
))).	chr16:28855974-28856212(-)$1	1	134	138	12.0000
...)	chr17:47484090-47484316(-)$1	1	181	185	12.0000
..))	chr10:99190251-99190511(+)$1	1	176	180	12.0000
((((	chr14:39530868-39531084(-)$1	1	51	55	12.0000
....	chr5:151180280-151180531(+)$1	1	93	97	12.0000
....	chr15:72501073-72501306(-)$1	1	199	203	12.0000
.)))	chr1:45980481-45980723(-)$1	1	21	25	12.0000
))))	chr2:73478348-73478603(+)$1	1	164	168	12.0000
.(((	chr11:61098958-61099249(-)$1	1	27	31	12.0000
.)))	chr17:35479358-35479648(-)$1	1	24	28	12.0000
((.(	chr19:46318629-46318877(-)$1	1	135	139	12.0000
((((	chr1:154573730-154574082(-)$1	1	26	30	12.0000
..((	chr17:36916693-36916937(+)$1	1	55	59	12.0000
)..)	chr22:42032419-42032632(+)$1	1	77	81	12.0000

#PSSM
U : 0.98	u : 0.01	
U : 0.98	u : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_transcript_m3_run2.nuc.txt

#NT
guggcgcaaucgguuag	chr6:26988106-26988314(+)$1	208	24	41	24.4722
guggcgcaaucgguuag	chr6:27599192-27599399(+)$1	207	13	30	24.4722
GUggcucguuggucuag	chr16:3232554-3232758(-)$1	204	50	67	24.7500
gugguucagugguagaa	chr1:17188361-17188567(+)$1	206	60	77	20.0277
guggcgcaaucgguuag	chr6:27599181-27599392(+)$1	211	24	41	24.4722
gugguucagugguagaa	chr16:70812825-70813029(-)$1	204	23	40	20.0277
guagcucagugguagag	chr6:28806124-28806332(-)$1	208	46	63	25.1666
GUggcucguuggucuag	chr16:3241937-3242139(+)$1	202	49	66	24.7500
UUUGCCUGCUGGUACAG	chr19:1648841-1649054(-)$1	213	119	136	15.1666
guggcgcaaugguagcg	chr17:19411437-19411648(+)$1	211	62	79	25.0277
guagcucagugguagag	chr6:28806141-28806345(-)$1	204	59	76	25.1666
GUggcucguuggucuag	chr14:21077395-21077622(-)$1	227	54	71	24.7500
guggccuaauggauaag	chr17:73031163-73031377(+)$1	214	50	67	25.0277
guggcgcaacgguagcg	chr17:8124078-8124301(-)$1	223	49	66	20.3055
guggccuaauggauaag	chr17:73031160-73031363(+)$1	203	53	70	25.0277
guggcgcaaucgguuag	chr19:1383517-1383749(+)$1	232	50	67	24.4722
GUggcucguuggucuag	chr16:3239580-3239788(+)$1	208	51	68	24.7500
guggcgcaaucgguuag	chr6:27599178-27599381(+)$1	203	27	44	24.4722
guggccuaauggauaag	chr17:73031151-73031360(+)$1	209	62	79	25.0277
UUUGCCUGCUGGUACAG	chr19:1648894-1649100(-)$1	206	165	182	15.1666
UUUGCCUGCUGGUACAG	chr19:1648815-1649041(-)$1	226	106	123	15.1666
UUUGCCUGCUGGUACAG	chr19:1648854-1649094(-)$1	240	159	176	15.1666
guggcgcaaugguagcg	chr17:19411448-19411681(+)$1	233	51	68	25.0277
guggcgcaaucgguuag	chr6:26988102-26988306(+)$1	204	28	45	24.4722
GUggcucguuggucuag	chr16:3232558-3232766(-)$1	208	58	75	24.7500
guggcgcaaucgguuag	chr6:26988114-26988325(+)$1	211	16	33	24.4722
guggccuaauggauaag	chr15:89878253-89878463(+)$1	210	56	73	25.0277
gugguucagugguagaa	chr1:17188367-17188600(+)$1	233	54	71	20.0277
guggccuaauggauaag	chr15:89878240-89878453(+)$1	213	69	86	25.0277
guggcgcaauggauaac	chr3:45730377-45730589(-)$1	212	32	49	22.6666
guagcucagugguagag	chr6:28806132-28806336(-)$1	204	50	67	25.1666
GUggcucguuggucuag	chr16:3239569-3239780(+)$1	211	62	79	24.7500
guagcucagugguagag	chr6:28806136-28806341(-)$1	205	55	72	25.1666
auagcucagugguagag	chr17:37309902-37310105(-)$1	203	53	70	21.0000
guggccuaauggauaag	chr15:89878263-89878494(+)$1	231	46	63	25.0277

#otherMatches

#Struct PSSM
eeeee:::::DDDDGGG	chr17:73031177-73031391(+)$1	214	36	53	25.0277
J:ccc"""dddd[bb[g	chr6:26988106-26988314(+)$1	208	24	41	24.4722
J::ddddrrrrrrrrrd	chr6:27599192-27599399(+)$1	207	13	30	24.4722
{CCC{BB{GGGGGGGGG	chr16:3232554-3232758(-)$1	204	50	67	24.7500
KKDDDDKKFFFFFFKKC	chr1:17188361-17188567(+)$1	206	60	77	20.0277
J::ddddrrrrrrrrrd	chr6:27599181-27599392(+)$1	211	24	41	24.4722
hh[a%%%%%%bb!!fff	chr16:70812825-70813029(-)$1	204	23	40	20.0277
DDDDKKFFFFFF{EEEE	chr6:28806124-28806332(-)$1	208	46	63	25.1666
fffff22ddddDDDD{C	chr16:3241937-3242139(+)$1	202	49	66	24.7500
A}HHHHHHHHZZZBB}C	chr19:1648841-1649054(-)$1	213	119	136	15.1666
hh22accceeeee:::B	chr17:19411437-19411648(+)$1	211	62	79	25.0277
===22dddd:HHHHHHH	chr6:28806141-28806345(-)$1	204	59	76	25.1666
B{DDDD{EEEEE{BB{D	chr14:21077395-21077622(-)$1	227	54	71	24.7500
DDDDNNNNNCCCLLLEE	chr17:73031163-73031377(+)$1	214	50	67	25.0277
mmcccCCC}GGGGGGG:	chr17:8124078-8124301(-)$1	223	49	66	20.3055
DDDDNNNNNCCCLLLEE	chr17:73031160-73031363(+)$1	203	53	70	25.0277
IIIIII:::iiiiiiii	chr19:1383517-1383749(+)$1	232	50	67	24.4722
"""dddd[aooooooa]	chr16:3239580-3239788(+)$1	208	51	68	24.7500
J::ddddrrrrrrrrrd	chr6:27599178-27599381(+)$1	203	27	44	24.4722
DD:ddddqqqqqqqqdd	chr17:73031151-73031360(+)$1	209	62	79	25.0277
HHHHHHHZZZCCCYYBB	chr19:1648894-1649100(-)$1	206	165	182	15.1666
a[ddddmmmmdddd]a]	chr19:1648815-1649041(-)$1	226	106	123	15.1666
dooooooddddFFFFFF	chr19:1648854-1649094(-)$1	240	159	176	15.1666
hh:ddddpppppppddd	chr17:19411448-19411681(+)$1	233	51	68	25.0277
J:ccc"""dddd[bb[g	chr6:26988102-26988306(+)$1	204	28	45	24.4722
{CCC{BB{GGGGGGGGG	chr16:3232558-3232766(-)$1	208	58	75	24.7500
DDEEEEE:::::::::g	chr6:26988114-26988325(+)$1	211	16	33	24.4722
G::ddddqqqqqqqqdd	chr15:89878253-89878463(+)$1	210	56	73	25.0277
DDKKGGGGGGGKKCCC:	chr1:17188367-17188600(+)$1	233	54	71	20.0277
G::ddddqqqqqqqqdd	chr15:89878240-89878453(+)$1	213	69	86	25.0277
FFFFFF{HHHHHHHH{D	chr3:45730377-45730589(-)$1	212	32	49	22.6666
DDDDKKFFFFFF{EEEE	chr6:28806132-28806336(-)$1	204	50	67	25.1666
"""dddd[aooooooa]	chr16:3239569-3239780(+)$1	211	62	79	24.7500
===22dddd:HHHHHHH	chr6:28806136-28806341(-)$1	205	55	72	25.1666
J::ddddpppppppddd	chr17:37309902-37310105(-)$1	203	53	70	21.0000
G::ddddqqqqqqqqdd	chr15:89878263-89878494(+)$1	231	46	63	25.0277

#DB
))))).....(((((((	chr17:73031177-73031391(+)$1	1	36	53	25.0277
(.(((...((((.((.(	chr6:26988106-26988314(+)$1	1	24	41	24.4722
(..((((.........)	chr6:27599192-27599399(+)$1	1	13	30	24.4722
.(((.((.(((((((((	chr16:3232554-3232758(-)$1	1	50	67	24.7500
..((((..((((((..(	chr1:17188361-17188567(+)$1	1	60	77	20.0277
(..((((.........)	chr6:27599181-27599392(+)$1	1	24	41	24.4722
((.(......((..(((	chr16:70812825-70813029(-)$1	1	23	40	20.0277
((((..((((((.((((	chr6:28806124-28806332(-)$1	1	46	63	25.1666
)))))..))))((((.(	chr16:3241937-3242139(+)$1	1	49	66	24.7500
).))))))))...)).)	chr19:1648841-1649054(-)$1	1	119	136	15.1666
))..)))))))))...(	chr17:19411437-19411648(+)$1	1	62	79	25.0277
)))..)))).(((((((	chr6:28806141-28806345(-)$1	1	59	76	25.1666
(.((((.(((((.((.(	chr14:21077395-21077622(-)$1	1	54	71	24.7500
((((.....(((...((	chr17:73031163-73031377(+)$1	1	50	67	25.0277
..)))))).))))))).	chr17:8124078-8124301(-)$1	1	49	66	20.3055
((((.....(((...((	chr17:73031160-73031363(+)$1	1	53	70	25.0277
((((((...((((((((	chr19:1383517-1383749(+)$1	1	50	67	24.4722
...((((.(......).	chr16:3239580-3239788(+)$1	1	51	68	24.7500
(..((((.........)	chr6:27599178-27599381(+)$1	1	27	44	24.4722
((.((((........))	chr17:73031151-73031360(+)$1	1	62	79	25.0277
)))))))...)))..))	chr19:1648894-1649100(-)$1	1	165	182	15.1666
(.((((....)))).).	chr19:1648815-1649041(-)$1	1	106	123	15.1666
(......))))))))))	chr19:1648854-1649094(-)$1	1	159	176	15.1666
)).((((.......)))	chr17:19411448-19411681(+)$1	1	51	68	25.0277
(.(((...((((.((.(	chr6:26988102-26988306(+)$1	1	28	45	24.4722
.(((.((.(((((((((	chr16:3232558-3232766(-)$1	1	58	75	24.7500
(((((((.........(	chr6:26988114-26988325(+)$1	1	16	33	24.4722
(..((((........))	chr15:89878253-89878463(+)$1	1	56	73	25.0277
((..(((((((..(((.	chr1:17188367-17188600(+)$1	1	54	71	20.0277
(..((((........))	chr15:89878240-89878453(+)$1	1	69	86	25.0277
((((((.((((((((.(	chr3:45730377-45730589(-)$1	1	32	49	22.6666
((((..((((((.((((	chr6:28806132-28806336(-)$1	1	50	67	25.1666
...((((.(......).	chr16:3239569-3239780(+)$1	1	62	79	24.7500
)))..)))).(((((((	chr6:28806136-28806341(-)$1	1	55	72	25.1666
(..((((.......)))	chr17:37309902-37310105(-)$1	1	53	70	21.0000
(..((((........))	chr15:89878263-89878494(+)$1	1	46	63	25.0277

#PSSM
g : 0.69	G : 0.16	U : 0.11	a : 0.02	
u : 0.72	U : 0.27	
g : 0.75	a : 0.13	U : 0.11	
g : 0.88	G : 0.11	
c : 0.80	C : 0.11	u : 0.08	
u : 0.38	g : 0.30	c : 0.19	C : 0.11	
c : 0.69	u : 0.19	U : 0.11	
a : 0.72	g : 0.16	G : 0.11	
a : 0.50	g : 0.22	u : 0.16	C : 0.11	
u : 0.86	U : 0.11	c : 0.02	
g : 0.69	c : 0.19	G : 0.11	
g : 0.88	G : 0.11	
u : 0.47	a : 0.22	g : 0.19	U : 0.11	
u : 0.41	a : 0.30	c : 0.16	A : 0.11	
u : 0.36	g : 0.30	a : 0.22	C : 0.11	
a : 0.80	A : 0.11	c : 0.08	
g : 0.77	G : 0.11	a : 0.08	c : 0.02	

#score	830.4444444444447
#seq	36
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_transcript_m1_run1.nuc.txt

#NT
CCCUG	chr14:105357446-105357786(+)$1	340	201	206	14.9999
CCCUG	chr16:87891586-87891826(-)$1	240	27	32	14.9999
CCCUG	chr8:142419158-142419410(+)$1	252	20	25	14.9999
CCCUG	chr1:2162575-2162837(+)$1	262	13	18	14.9999
CCCUG	chr22:20112239-20112505(+)$1	266	124	129	14.9999
CCCUG	chr19:944891-945123(+)$1	232	35	40	14.9999
CCCUG	chr5:172377764-172378027(+)$1	263	82	87	14.9999
CCCUG	chr16:89586129-89586363(+)$1	234	40	45	14.9999
CCCUG	chr11:2152475-2152680(-)$1	205	169	174	14.9999
CCCUG	chr9:136533221-136533502(-)$1	281	144	149	14.9999
CCCUG	chr15:101852486-101852807(-)$1	321	226	231	14.9999
CCCUG	chr12:49331082-49331356(-)$1	274	229	234	14.9999
CCCUG	chr1:2207691-2207944(+)$1	253	188	193	14.9999
CCCUG	chr10:105395304-105395559(-)$1	255	32	37	14.9999
CCCUG	chr16:2649018-2649276(+)$1	258	165	170	14.9999
CCCUG	chr17:79052694-79052991(+)$1	297	22	27	14.9999
cccug	chr1:2188227-2188473(+)$1	246	66	71	14.9999
CCCUG	chr21:46894672-46894922(+)$1	250	182	187	14.9999
CCCUG	chr17:75427986-75428304(+)$1	318	11	16	14.9999
CCCUG	chr2:20401329-20401578(-)$1	249	185	190	14.9999
cccug	chr9:136000085-136000377(-)$1	292	55	60	14.9999
CCCUG	chr3:32882042-32882310(+)$1	268	159	164	14.9999
CCCUG	chr12:113826779-113827035(+)$1	256	72	77	14.9999
CCCUG	chr11:2152470-2152672(-)$1	202	161	166	14.9999
CCCUG	chr7:5459664-5459923(-)$1	259	11	16	14.9999
CCCUG	chr15:72522522-72522815(-)$1	293	242	247	14.9999
CCCUG	chr16:89531848-89532077(-)$1	229	223	228	14.9999
CCCUG	chr1:2202140-2202374(+)$1	234	49	54	14.9999
CCCUG	chr11:116715121-116715401(-)$1	280	160	165	14.9999
CCCUG	chr17:79477273-79477507(-)$1	234	17	22	14.9999
CCCUG	chr17:55519835-55520084(+)$1	249	210	215	14.9999
CCCUG	chr16:89371853-89372139(-)$1	286	257	262	14.9999
CCCUG	chr11:68097923-68098189(+)$1	266	72	77	14.9999
CCCUG	chr16:88587515-88587841(+)$1	326	241	246	14.9999
CCCUG	chr7:47596190-47596503(-)$1	313	166	171	14.9999
CCCUG	chr11:61633935-61634215(+)$1	280	149	154	14.9999
CCCUG	chr11:2152335-2152547(-)$1	212	36	41	14.9999
CCCUG	chr13:113379975-113380302(+)$1	327	53	58	14.9999
CCCUG	chr17:79959390-79959611(+)$1	221	215	220	14.9999
CCCUG	chr19:1835756-1836050(-)$1	294	30	35	14.9999
CCCUG	chr1:2164005-2164293(+)$1	288	122	127	14.9999
CCCUG	chr19:941436-941683(+)$1	247	80	85	14.9999
cccug	chr19:39980929-39981210(+)$1	281	18	23	14.9999
cccug	chr21:47563399-47563644(-)$1	245	57	62	14.9999
CCCUG	chr17:15369067-15369368(-)$1	301	107	112	14.9999
CCCUG	chr1:2204777-2205073(+)$1	296	175	180	14.9999
CCCUG	chr8:142425016-142425278(+)$1	262	136	141	14.9999
CCCUG	chr17:79963133-79963403(+)$1	270	37	42	14.9999
CCCUG	chr11:118621581-118621856(-)$1	275	236	241	14.9999
cccug	chr2:236422138-236422380(+)$1	242	135	140	14.9999
CCCUG	chr9:136848434-136848733(-)$1	299	116	121	14.9999
CCCUG	chr1:2179088-2179336(+)$1	248	215	220	14.9999
CCCUG	chr9:135998446-135998727(-)$1	281	191	196	14.9999
CCCUG	chr9:95971059-95971375(+)$1	316	208	213	14.9999
cccug	chr19:952394-952656(+)$1	262	38	43	14.9999
CCCUG	chr19:810940-811192(+)$1	252	54	59	14.9999
CCCUG	chr2:236480851-236481119(+)$1	268	14	19	14.9999
CCCUG	chr9:136781246-136781517(-)$1	271	243	248	14.9999
CCCUG	chr19:6414422-6414675(-)$1	253	73	78	14.9999
CCCUG	chr17:79477348-79477571(-)$1	223	81	86	14.9999
CCCUG	chr20:62546258-62546586(+)$1	328	106	111	14.9999

#otherMatches

#Struct PSSM
gg[bb	chr19:1845679-1845961(-)$1	282	176	181	14.9999
22ddd	chr14:105357446-105357786(+)$1	340	201	206	14.9999
[cccm	chr16:87891586-87891826(-)$1	240	27	32	14.9999
ccc::	chr8:142419158-142419410(+)$1	252	20	25	14.9999
"""bb	chr1:2162575-2162837(+)$1	262	13	18	14.9999
flllf	chr22:20112239-20112505(+)$1	266	124	129	14.9999
:::::	chr19:944891-945123(+)$1	232	35	40	14.9999
eeeef	chr5:172377764-172378027(+)$1	263	82	87	14.9999
eeeee	chr16:89586129-89586363(+)$1	234	40	45	14.9999
c:ccc	chr11:2152475-2152680(-)$1	205	169	174	14.9999
hhh44	chr9:136533221-136533502(-)$1	281	144	149	14.9999
55555	chr15:101852486-101852807(-)$1	321	226	231	14.9999
daa]f	chr12:49331082-49331356(-)$1	274	229	234	14.9999
cc!!g	chr1:2207691-2207944(+)$1	253	188	193	14.9999
eeee2	chr10:105395304-105395559(-)$1	255	32	37	14.9999
:::::	chr16:2649018-2649276(+)$1	258	165	170	14.9999
dddqq	chr17:79052694-79052991(+)$1	297	22	27	14.9999
idddd	chr1:2188227-2188473(+)$1	246	66	71	14.9999
fff[a	chr21:46894672-46894922(+)$1	250	182	187	14.9999
ccc))	chr17:75427986-75428304(+)$1	318	11	16	14.9999
DDDD:	chr2:20401329-20401578(-)$1	249	185	190	14.9999
"""cc	chr9:136000085-136000377(-)$1	292	55	60	14.9999
!!fff	chr3:32882042-32882310(+)$1	268	159	164	14.9999
ffffh	chr12:113826779-113827035(+)$1	256	72	77	14.9999
c:ccc	chr11:2152470-2152672(-)$1	202	161	166	14.9999
JJJJJ	chr7:5459664-5459923(-)$1	259	11	16	14.9999
JJJJJ	chr15:72522522-72522815(-)$1	293	242	247	14.9999
]bb::	chr16:89531848-89532077(-)$1	229	223	228	14.9999
hhhhh	chr1:2202140-2202374(+)$1	234	49	54	14.9999
dllld	chr11:116715121-116715401(-)$1	280	160	165	14.9999
JJJJJ	chr17:79477273-79477507(-)$1	234	17	22	14.9999
HDDDD	chr17:55519835-55520084(+)$1	249	210	215	14.9999
ddd]c	chr16:89371853-89372139(-)$1	286	257	262	14.9999
eeemm	chr11:68097923-68098189(+)$1	266	72	77	14.9999
ttttt	chr16:88587515-88587841(+)$1	326	241	246	14.9999
eee::	chr7:47596190-47596503(-)$1	313	166	171	14.9999
eeeed	chr11:61633935-61634215(+)$1	280	149	154	14.9999
ddggg	chr11:2152335-2152547(-)$1	212	36	41	14.9999
ffa[c	chr13:113379975-113380302(+)$1	327	53	58	14.9999
IIIII	chr17:79959390-79959611(+)$1	221	215	220	14.9999
mmeee	chr19:1835756-1836050(-)$1	294	30	35	14.9999
"""cc	chr1:2164005-2164293(+)$1	288	122	127	14.9999
g]bb4	chr19:941436-941683(+)$1	247	80	85	14.9999
:::GG	chr19:39980929-39981210(+)$1	281	18	23	14.9999
ddppp	chr21:47563399-47563644(-)$1	245	57	62	14.9999
[bb[b	chr17:15369067-15369368(-)$1	301	107	112	14.9999
eeee]	chr1:2204777-2205073(+)$1	296	175	180	14.9999
ddd]c	chr8:142425016-142425278(+)$1	262	136	141	14.9999
dddGG	chr17:79963133-79963403(+)$1	270	37	42	14.9999
=ccc[	chr11:118621581-118621856(-)$1	275	236	241	14.9999
mmmmc	chr2:236422138-236422380(+)$1	242	135	140	14.9999
ffff]	chr9:136848434-136848733(-)$1	299	116	121	14.9999
gg22c	chr1:2179088-2179336(+)$1	248	215	220	14.9999
hhhhh	chr9:135998446-135998727(-)$1	281	191	196	14.9999
cc22c	chr9:95971059-95971375(+)$1	316	208	213	14.9999
ellle	chr19:952394-952656(+)$1	262	38	43	14.9999
eemmm	chr19:810940-811192(+)$1	252	54	59	14.9999
FFF{C	chr2:236480851-236481119(+)$1	268	14	19	14.9999
pppcc	chr9:136781246-136781517(-)$1	271	243	248	14.9999
fffff	chr19:6414422-6414675(-)$1	253	73	78	14.9999
JJJJJ	chr17:79477348-79477571(-)$1	223	81	86	14.9999
EEccc	chr20:62546258-62546586(+)$1	328	106	111	14.9999

#DB
((.((	chr19:1845679-1845961(-)$1	1	176	181	14.9999
..)))	chr14:105357446-105357786(+)$1	1	201	206	14.9999
.(((.	chr16:87891586-87891826(-)$1	1	27	32	14.9999
)))..	chr8:142419158-142419410(+)$1	1	20	25	14.9999
...((	chr1:2162575-2162837(+)$1	1	13	18	14.9999
(...)	chr22:20112239-20112505(+)$1	1	124	129	14.9999
.....	chr19:944891-945123(+)$1	1	35	40	14.9999
(((((	chr5:172377764-172378027(+)$1	1	82	87	14.9999
(((((	chr16:89586129-89586363(+)$1	1	40	45	14.9999
).(((	chr11:2152475-2152680(-)$1	1	169	174	14.9999
)))..	chr9:136533221-136533502(-)$1	1	144	149	14.9999
.....	chr15:101852486-101852807(-)$1	1	226	231	14.9999
))).)	chr12:49331082-49331356(-)$1	1	229	234	14.9999
((..(	chr1:2207691-2207944(+)$1	1	188	193	14.9999
)))).	chr10:105395304-105395559(-)$1	1	32	37	14.9999
.....	chr16:2649018-2649276(+)$1	1	165	170	14.9999
(((..	chr17:79052694-79052991(+)$1	1	22	27	14.9999
)((((	chr1:2188227-2188473(+)$1	1	66	71	14.9999
(((.(	chr21:46894672-46894922(+)$1	1	182	187	14.9999
(((..	chr17:75427986-75428304(+)$1	1	11	16	14.9999
)))).	chr2:20401329-20401578(-)$1	1	185	190	14.9999
...((	chr9:136000085-136000377(-)$1	1	55	60	14.9999
..(((	chr3:32882042-32882310(+)$1	1	159	164	14.9999
))))(	chr12:113826779-113827035(+)$1	1	72	77	14.9999
).(((	chr11:2152470-2152672(-)$1	1	161	166	14.9999
(((((	chr7:5459664-5459923(-)$1	1	11	16	14.9999
)))))	chr15:72522522-72522815(-)$1	1	242	247	14.9999
.))..	chr16:89531848-89532077(-)$1	1	223	228	14.9999
(((((	chr1:2202140-2202374(+)$1	1	49	54	14.9999
(...)	chr11:116715121-116715401(-)$1	1	160	165	14.9999
(((((	chr17:79477273-79477507(-)$1	1	17	22	14.9999
)))))	chr17:55519835-55520084(+)$1	1	210	215	14.9999
))).)	chr16:89371853-89372139(-)$1	1	257	262	14.9999
(((..	chr11:68097923-68098189(+)$1	1	72	77	14.9999
.....	chr16:88587515-88587841(+)$1	1	241	246	14.9999
)))..	chr7:47596190-47596503(-)$1	1	166	171	14.9999
(((((	chr11:61633935-61634215(+)$1	1	149	154	14.9999
(((((	chr11:2152335-2152547(-)$1	1	36	41	14.9999
(((.(	chr13:113379975-113380302(+)$1	1	53	58	14.9999
)))))	chr17:79959390-79959611(+)$1	1	215	220	14.9999
..)))	chr19:1835756-1836050(-)$1	1	30	35	14.9999
...((	chr1:2164005-2164293(+)$1	1	122	127	14.9999
).)).	chr19:941436-941683(+)$1	1	80	85	14.9999
...((	chr19:39980929-39981210(+)$1	1	18	23	14.9999
((...	chr21:47563399-47563644(-)$1	1	57	62	14.9999
.((.(	chr17:15369067-15369368(-)$1	1	107	112	14.9999
)))).	chr1:2204777-2205073(+)$1	1	175	180	14.9999
))).)	chr8:142425016-142425278(+)$1	1	136	141	14.9999
)))((	chr17:79963133-79963403(+)$1	1	37	42	14.9999
)(((.	chr11:118621581-118621856(-)$1	1	236	241	14.9999
....)	chr2:236422138-236422380(+)$1	1	135	140	14.9999
)))).	chr9:136848434-136848733(-)$1	1	116	121	14.9999
))..)	chr1:2179088-2179336(+)$1	1	215	220	14.9999
)))))	chr9:135998446-135998727(-)$1	1	191	196	14.9999
))..)	chr9:95971059-95971375(+)$1	1	208	213	14.9999
(...)	chr19:952394-952656(+)$1	1	38	43	14.9999
((...	chr19:810940-811192(+)$1	1	54	59	14.9999
(((.(	chr2:236480851-236481119(+)$1	1	14	19	14.9999
...))	chr9:136781246-136781517(-)$1	1	243	248	14.9999
)))))	chr19:6414422-6414675(-)$1	1	73	78	14.9999
(((((	chr17:79477348-79477571(-)$1	1	81	86	14.9999
(((((	chr20:62546258-62546586(+)$1	1	106	111	14.9999

#PSSM
C : 0.90	c : 0.09	
C : 0.90	c : 0.09	
C : 0.90	c : 0.09	
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	

#score	929.9999999999999
#seq	62
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_CDS_m3_run2.nuc.txt

#NT
CGAGGAAGA	chr13:107211782-107212097(-)$1	315	122	131	16.7826
UGACGAAGA	chr5:134113160-134113466(+)$1	306	104	113	19.2826
UGAUCAAGA	chr1:171486632-171486952(+)$1	320	149	158	17.7608
Ugaggaaga	chr2:86258547-86258847(-)$1	300	103	112	20.2608
ugaagaaga	chr11:35685012-35685295(+)$1	283	21	30	19.8260
UGAGGAAGA	chr20:3765399-3765702(-)$1	303	113	122	20.2608
ugaugaagg	chr9:100777576-100777798(+)$1	222	115	124	17.5434
ggaugaaga	chr4:174253130-174253339(-)$1	209	90	99	19.1739
AGAAGAAGA	chr1:31836813-31837132(+)$1	319	66	75	16.6739
ugaggaaga	chr1:90493022-90493378(+)$1	356	0	9	20.2608
ugaugaaga	chr2:232325323-232325598(-)$1	275	163	172	22.3260
UAAUGAAGA	chr1:36216769-36217091(-)$1	322	81	90	17.6521
UGAGGAAGA	chr2:233697466-233697806(+)$1	340	201	210	20.2608
UCAUGAAGA	chr15:59191827-59192154(-)$1	327	103	112	17.6521
ugaugaaga	chr6:44217972-44218197(+)$1	225	135	144	22.3260
ugaugaaga	chr6:44217997-44218207(+)$1	210	110	119	22.3260
UGAUAAAGA	chr10:43297484-43297772(+)$1	288	147	156	17.8695
GGAGGAAGA	chr10:70098299-70098546(+)$1	247	63	72	17.1086
UGAGGAAGA	chr4:4275992-4276244(-)$1	252	98	107	20.2608
ugaugauga	chr5:170827069-170827301(+)$1	232	87	96	18.0869
UGAGGAAGA	chr2:99992845-99993131(+)$1	286	100	109	20.2608
ugaugaaga	chr9:131456193-131456418(+)$1	225	31	40	22.3260
UGAAAAAGA	chr10:70520807-70521036(+)$1	229	90	99	15.3695
UGCUGAAGA	chr17:66033368-66033627(+)$1	259	169	178	17.7608
AGAUGAAGA	chr12:76453476-76453689(-)$1	213	90	99	19.1739
ugaugaaga	chr2:232325278-232325523(-)$1	245	88	97	22.3260
ugauggaga	chrX:64956557-64956865(+)$1	308	179	188	17.5434
UGAUGAGGA	chr3:196214164-196214498(-)$1	334	192	201	17.8695
UGAUGAAGA	chr9:37126536-37126853(+)$1	317	77	86	22.3260
CGAGGAAGA	chr10:120809213-120809515(-)$1	302	55	64	16.7826
UGAUGAAGA	chr12:132198558-132198893(+)$1	335	168	177	22.3260
UGAUGAUGA	chr15:25615919-25616291(-)$1	372	50	59	18.0869
ugaugaaga	chr8:124381972-124382290(-)$1	318	81	90	22.3260
AGAAGAAGA	chr11:93469280-93469553(-)$1	273	136	145	16.6739
UGAUGAAGA	chr1:150902372-150902774(+)$1	402	187	196	22.3260
UGAUGAACA	chr11:32610039-32610323(+)$1	284	112	121	17.5434
UGAAGAAGA	chr4:2930080-2930394(+)$1	314	138	147	19.8260
UGAUGAAGA	chr10:103558854-103559206(-)$1	352	178	187	22.3260
GGAUGAAGA	chr8:117861093-117861317(-)$1	224	48	57	19.1739
AGAGGAAGA	chr1:35653472-35653749(-)$1	277	82	91	17.1086
GGAUGAAGA	chr8:117861117-117861339(-)$1	222	70	79	19.1739
GGAAGAAGA	chr4:152024089-152024383(+)$1	294	72	81	16.6739
UGAUgaaga	chr1:52305957-52306232(-)$1	275	130	139	22.3260
AGAUGAAGA	chr17:48827852-48828135(+)$1	283	273	282	19.1739
UGAUGAUGA	chr1:67411743-67412081(+)$1	338	153	162	18.0869

#otherMatches

#Struct PSSM
FFFF:::::	chr17:26912819-26913117(-)$1	298	141	150	17.7608
cc[asssss	chr13:107211782-107212097(-)$1	315	122	131	16.7826
f]ccc4444	chr5:134113160-134113466(+)$1	306	104	113	19.2826
fnnnnnfff	chr1:171486632-171486952(+)$1	320	149	158	17.7608
a22bb]hhh	chr2:86258547-86258847(-)$1	300	103	112	20.2608
EEEMMMMDD	chr11:35685012-35685295(+)$1	283	21	30	19.8260
dddd22ddd	chr20:3765399-3765702(-)$1	303	113	122	20.2608
!!dddd[a[	chr9:100777576-100777798(+)$1	222	115	124	17.5434
hhhhh"""b	chr4:174253130-174253339(-)$1	209	90	99	19.1739
JJLLLCCC:	chr1:31836813-31837132(+)$1	319	66	75	16.6739
:::::::::	chr1:90493022-90493378(+)$1	356	0	9	20.2608
:::dddd[e	chr2:232325323-232325598(-)$1	275	163	172	22.3260
mccc22fff	chr1:36216769-36217091(-)$1	322	81	90	17.6521
yyyyyyyyy	chr2:233697466-233697806(+)$1	340	201	210	20.2608
bb$$$$$cc	chr15:59191827-59192154(-)$1	327	103	112	17.6521
:::::::::	chr6:44217972-44218197(+)$1	225	135	144	22.3260
:::::::::	chr6:44217997-44218207(+)$1	210	110	119	22.3260
==="""ccc	chr10:43297484-43297772(+)$1	288	147	156	17.8695
vvvvvvvvv	chr10:70098299-70098546(+)$1	247	63	72	17.1086
::::::A{A	chr4:4275992-4276244(-)$1	252	98	107	20.2608
%ccc[bbmm	chr5:170827069-170827301(+)$1	232	87	96	18.0869
ee&&&&&&&	chr2:99992845-99993131(+)$1	286	100	109	20.2608
:::::::::	chr9:131456193-131456418(+)$1	225	31	40	22.3260
eee::::::	chr10:70520807-70521036(+)$1	229	90	99	15.3695
FFFFF:bb[	chr17:66033368-66033627(+)$1	259	169	178	17.7608
b!!annnnn	chr12:76453476-76453689(-)$1	213	90	99	19.1739
FFMMMMHHH	chr2:232325278-232325523(-)$1	245	88	97	22.3260
b4444eeee	chrX:64956557-64956865(+)$1	308	179	188	17.5434
ccbb55555	chr3:196214164-196214498(-)$1	334	192	201	17.8695
fnnnnnfff	chr9:37126536-37126853(+)$1	317	77	86	22.3260
LGGGGGGG{	chr10:120809213-120809515(-)$1	302	55	64	16.7826
FFEEEEEA{	chr12:132198558-132198893(+)$1	335	168	177	22.3260
gggggpppp	chr15:25615919-25616291(-)$1	372	50	59	18.0869
b[bb[a!!b	chr8:124381972-124382290(-)$1	318	81	90	22.3260
ff22ccc22	chr11:93469280-93469553(-)$1	273	136	145	16.6739
4444fffff	chr1:150902372-150902774(+)$1	402	187	196	22.3260
d]bb333ff	chr11:32610039-32610323(+)$1	284	112	121	17.5434
nnnndddd]	chr4:2930080-2930394(+)$1	314	138	147	19.8260
IIIIIII@@	chr10:103558854-103559206(-)$1	352	178	187	22.3260
l========	chr8:117861093-117861317(-)$1	224	48	57	19.1739
:::::::::	chr1:35653472-35653749(-)$1	277	82	91	17.1086
l========	chr8:117861117-117861339(-)$1	222	70	79	19.1739
bb::::::e	chr4:152024089-152024383(+)$1	294	72	81	16.6739
EEEEE@@@@	chr1:52305957-52306232(-)$1	275	130	139	22.3260
:::::::::	chr17:48827852-48828135(+)$1	283	273	282	19.1739
ggggg]bb3	chr1:67411743-67412081(+)$1	338	153	162	18.0869

#DB
((((.....	chr17:26912819-26913117(-)$1	1	141	150	17.7608
((.(.....	chr13:107211782-107212097(-)$1	1	122	131	16.7826
).)))....	chr5:134113160-134113466(+)$1	1	104	113	19.2826
(.....)))	chr1:171486632-171486952(+)$1	1	149	158	17.7608
)..)).)))	chr2:86258547-86258847(-)$1	1	103	112	20.2608
(((....((	chr11:35685012-35685295(+)$1	1	21	30	19.8260
))))..)))	chr20:3765399-3765702(-)$1	1	113	122	20.2608
..((((.(.	chr9:100777576-100777798(+)$1	1	115	124	17.5434
(((((...(	chr4:174253130-174253339(-)$1	1	90	99	19.1739
((...(((.	chr1:31836813-31837132(+)$1	1	66	75	16.6739
.........	chr1:90493022-90493378(+)$1	1	0	9	20.2608
...((((.(	chr2:232325323-232325598(-)$1	1	163	172	22.3260
.)))..)))	chr1:36216769-36217091(-)$1	1	81	90	17.6521
.........	chr2:233697466-233697806(+)$1	1	201	210	20.2608
((.....((	chr15:59191827-59192154(-)$1	1	103	112	17.6521
.........	chr6:44217972-44218197(+)$1	1	135	144	22.3260
.........	chr6:44217997-44218207(+)$1	1	110	119	22.3260
(((...(((	chr10:43297484-43297772(+)$1	1	147	156	17.8695
.........	chr10:70098299-70098546(+)$1	1	63	72	17.1086
......(.(	chr4:4275992-4276244(-)$1	1	98	107	20.2608
.(((.((..	chr5:170827069-170827301(+)$1	1	87	96	18.0869
((.......	chr2:99992845-99993131(+)$1	1	100	109	20.2608
.........	chr9:131456193-131456418(+)$1	1	31	40	22.3260
)))......	chr10:70520807-70521036(+)$1	1	90	99	15.3695
))))).((.	chr17:66033368-66033627(+)$1	1	169	178	17.7608
(..(.....	chr12:76453476-76453689(-)$1	1	90	99	19.1739
((....(((	chr2:232325278-232325523(-)$1	1	88	97	22.3260
)....))))	chrX:64956557-64956865(+)$1	1	179	188	17.5434
)))).....	chr3:196214164-196214498(-)$1	1	192	201	17.8695
(.....)))	chr9:37126536-37126853(+)$1	1	77	86	22.3260
.(((((((.	chr10:120809213-120809515(-)$1	1	55	64	16.7826
))((((((.	chr12:132198558-132198893(+)$1	1	168	177	22.3260
(((((....	chr15:25615919-25616291(-)$1	1	50	59	18.0869
(.((.(..(	chr8:124381972-124382290(-)$1	1	81	90	22.3260
))..)))..	chr11:93469280-93469553(-)$1	1	136	145	16.6739
....)))))	chr1:150902372-150902774(+)$1	1	187	196	22.3260
).))...))	chr11:32610039-32610323(+)$1	1	112	121	17.5434
....)))).	chr4:2930080-2930394(+)$1	1	138	147	19.8260
)))))))..	chr10:103558854-103559206(-)$1	1	178	187	22.3260
.))))))))	chr8:117861093-117861317(-)$1	1	48	57	19.1739
.........	chr1:35653472-35653749(-)$1	1	82	91	17.1086
.))))))))	chr8:117861117-117861339(-)$1	1	70	79	19.1739
))......(	chr4:152024089-152024383(+)$1	1	72	81	16.6739
)))))....	chr1:52305957-52306232(-)$1	1	130	139	22.3260
.........	chr17:48827852-48828135(+)$1	1	273	282	19.1739
))))).)).	chr1:67411743-67412081(+)$1	1	153	162	18.0869

#PSSM
U : 0.49	u : 0.23	A : 0.10	G : 0.08	C : 0.04	g : 0.02	
G : 0.67	g : 0.28	A : 0.02	C : 0.02	
A : 0.67	a : 0.28	C : 0.04	
U : 0.41	u : 0.21	G : 0.17	A : 0.10	g : 0.04	C : 0.02	a : 0.02	
G : 0.63	g : 0.30	A : 0.04	C : 0.02	
A : 0.69	a : 0.28	g : 0.02	
A : 0.63	a : 0.28	U : 0.04	u : 0.02	G : 0.02	
G : 0.67	g : 0.30	C : 0.02	
A : 0.69	a : 0.28	g : 0.02	

#score	886.347826086956
#seq	46
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_CDS_m1_run1.nuc.txt

#NT
agaaggagaagaugaggaaga	chr9:100773512-100773772(+)$1	260	38	59	37.1379
UGAGGAAGAAGAGGAGGAAGA	chr2:219134027-219134360(-)$1	333	137	158	36.7931
ugaagaagaggaugaugagga	chr2:232325279-232325482(-)$1	203	2	23	31.8793
AGAAGAAGAAGAGGAUGAUGA	chr12:6879221-6879443(+)$1	222	108	129	39.4655
agaaaaagaagaaaacgaaaa	chr20:60711810-60712092(-)$1	282	134	155	30.8448
AGGUGAGGAAGAGGAUGGAGA	chr2:232577075-232577323(+)$1	248	75	96	28.8620
agaugaugaugaugaugaaga	chr1:186295155-186295471(-)$1	316	124	145	31.1896
GGAAGAGGAAGAAGGAGAAAA	chr1:46072131-46072374(+)$1	243	67	88	30.7586
AGAAAAGGAGGAAGAAGAAGA	chr2:153525552-153525889(-)$1	337	157	178	34.7241
AGAAGAAGAGGAAGAGGAAGA	chr11:65830793-65831103(+)$1	310	148	169	39.3793
AAAAGAAACAGCAGAAGAAGA	chr2:27592254-27592521(-)$1	267	154	175	27.8275
AAAAGAAGAAGAGGAAAGAGA	chr16:19725372-19725632(-)$1	260	143	164	32.1379
agaagaagaagaagaagaaga	chrX:154005022-154005279(+)$1	257	67	88	44.2068
acaagaagaagaagaagaaga	chr14:102551125-102551383(-)$1	258	202	223	40.1551
AGAAGAAGAAGAGGAUGAUGA	chr12:6879273-6879484(+)$1	211	56	77	39.4655
agaggaagcaggagaggaaga	chr14:39649824-39650094(+)$1	270	81	102	30.6724
UGAAGAAGAAGACGAUGACUA	chr10:101590068-101590290(+)$1	222	8	29	30.1551
aaaagaagaagagaagaaagg	chr11:10795517-10795815(+)$1	298	111	132	26.2758
agaaggagaaggggaagaaaa	chr1:16891204-16891509(-)$1	305	152	173	32.9137
GGAACUAGAACAAGAAGAAGA	chr16:3785930-3786209(-)$1	279	106	127	29.3793
agaagaagaaaacuaagaaga	chr6:44218131-44218373(+)$1	242	41	62	34.2931
AGACAGCGAAGAGGAAGAAGA	chr12:56814703-56815025(-)$1	322	178	199	29.8103
agaagaagaagaggaugaaga	chr1:235377094-235377443(-)$1	349	165	186	43.5172
agaaggagaaggggaagaaga	chr6:30550070-30550359(+)$1	289	111	132	36.5344
agaaaaaaaagaaaaagaaga	chr8:98725797-98726102(+)$1	305	150	171	32.9137
UGAAGAAGAAACGGAAGAAAA	chr20:40161786-40162097(-)$1	311	129	150	30.1551
AGUUgaagaagaggaagaaga	chr2:203167635-203167880(+)$1	245	6	27	37.1379
ggaaaaggaggaggaggaaga	chr7:134617935-134618251(+)$1	316	148	169	30.9310
AUGAUAAGAAGAUGAAGAAGA	chr14:32563395-32563704(+)$1	309	147	168	30.8448
ggaggaagaagaugaugaaga	chr14:23549641-23549923(-)$1	282	39	60	36.0172
UGUAGAGGAAGAAGAUGAAGA	chr6:4042624-4042903(+)$1	279	111	132	32.9999
UGAAGAAGAGCAAGAAGAAGA	chr4:2930060-2930421(+)$1	361	158	179	34.2068
AAAAGAACAAGAGGUAGCAGA	chr3:37366516-37366819(+)$1	303	64	85	27.4827
UGAAGAAGAAACGGAAGAAAA	chr20:40161929-40162187(-)$1	258	219	240	30.1551
agaggaagaagagaaggaaga	chr5:179151675-179151885(+)$1	210	41	62	35.7586
agaagaagaggaggaggaaga	chr22:41650240-41650506(-)$1	266	62	83	39.8103
AGAAGAAACGCAGGAAGAAGA	chr14:21896007-21896274(-)$1	267	141	162	28.9482
AGAUGAAGAGGAAGAUGAUGA	chr2:172582023-172582307(+)$1	284	102	123	32.6551
ggaggaagaagaggaagaaga	chr22:36907448-36907728(-)$1	280	156	177	38.8620
agaaaaagaagaagaagaaga	chr5:891645-891913(-)$1	268	88	109	40.8448
agaagaaaaagaaggagaaaa	chr20:17640793-17641070(-)$1	277	90	111	32.2241
ggaagauaaagaugaugaaga	chr6:44217972-44218199(+)$1	227	123	144	31.5344
AGAUGAGGAUGAAGAUGAAGA	chr1:21071934-21072242(-)$1	308	135	156	33.1724
AGAAGAAGAAGAAAAUCAAAA	chr3:142757654-142757904(+)$1	250	127	148	31.0172
AGGUGAGGAAGAGGAUGGAGA	chr2:232577051-232577258(+)$1	207	99	120	28.8620
GGAAGAAGAAGGAGAUGAGGA	chr12:76442880-76443133(-)$1	253	108	129	32.5689
AGAAAAAGAAGAAAAAGAAGA	chr2:153528871-153529202(-)$1	331	122	143	36.9655
AGAAGAGGAAGAAGAAGAGGA	chr1:27105560-27105826(+)$1	266	147	168	37.2241
GCGAGAAGAAGAGGAAGAAGA	chr1:38435140-38435477(-)$1	337	129	150	34.1206
AGAAAAAGAAGAGGAGGAGCA	chr10:120809983-120810269(-)$1	286	187	208	31.4482
agaaggagaagaugaggaaga	chr9:100773452-100773712(+)$1	260	98	119	37.1379
ggaagaggaagaggaagaaga	chr17:3721612-3721951(-)$1	339	140	161	39.1206
AGGAGAAGAAGAGGCAAAAGG	chr1:146756937-146757204(+)$1	267	184	205	27.1379
ggacgaggaugaggaugaaga	chr2:232326182-232326405(-)$1	223	24	45	30.7586
Ggaagaagaagaagaagaaga	chr14:35550124-35550392(+)$1	268	102	123	41.7068
AAAAGAAGAGAAGGGAGAAGA	chr17:38317905-38318179(+)$1	274	183	204	29.6379
agagcaagacgaagaugaaga	chr12:104341026-104341238(+)$1	212	121	142	32.1379

#otherMatches

#Struct PSSM
:::::::::::::::::::::	chr17:78261510-78261766(+)$1	256	107	128	37.0517
="""a^^^^^^^^^^^^^^^^	chr9:100773512-100773772(+)$1	260	38	59	37.1379
]dddd333ffffff]bb]ddd	chr2:219134027-219134360(-)$1	333	137	158	36.7931
::::::::ffffff####fff	chr2:232325279-232325482(-)$1	203	2	23	31.8793
bb4444eeeee]bb]a]bb33	chr12:6879221-6879443(+)$1	222	108	129	39.4655
^^^^^^^^^^^^^^^^^^^^^	chr20:60711810-60712092(-)$1	282	134	155	30.8448
fwwwwwwwwwwwwwwffffff	chr2:232577075-232577323(+)$1	248	75	96	28.8620
::bb[bbmmmmbb]bb::DDD	chr1:186295155-186295471(-)$1	316	124	145	31.1896
CCC{DDDDMMMMDDDD{A:::	chr1:46072131-46072374(+)$1	243	67	88	30.7586
ggg::::::::::::::::::	chr2:153525552-153525889(-)$1	337	157	178	34.7241
pppppppeeeee:FFFFFFKK	chr11:65830793-65831103(+)$1	310	148	169	39.3793
rrrrrrrra22a]dddd::::	chr2:27592254-27592521(-)$1	267	154	175	27.8275
^^^^^^^^^^^^^^^^^^eee	chr16:19725372-19725632(-)$1	260	143	164	32.1379
9999999ggggggg]ddddff	chrX:154005022-154005279(+)$1	257	67	88	44.2068
^^^^^^^^^^^^^^^^^^^^^	chr14:102551125-102551383(-)$1	258	202	223	40.1551
bb4444eeeee]bb]a]bbgg	chr12:6879273-6879484(+)$1	211	56	77	39.4655
:::::::::::::::::::::	chr14:39649824-39650094(+)$1	270	81	102	30.6724
{JJJJJJJJJJJ::ccc!!ee	chr10:101590068-101590290(+)$1	222	8	29	30.1551
^^^^^^^^^^^^^^^^^^^ee	chr11:10795517-10795815(+)$1	298	111	132	26.2758
:::::::::::::::::::::	chr1:16891204-16891509(-)$1	305	152	173	32.9137
bb22ffffff::::::::ggg	chr16:3785930-3786209(-)$1	279	106	127	29.3793
:::::::::::::::::::ff	chr6:44218131-44218373(+)$1	242	41	62	34.2931
qqqqqqa22bb::::::::::	chr12:56814703-56815025(-)$1	322	178	199	29.8103
ffff55555ddddggggggg8	chr1:235377094-235377443(-)$1	349	165	186	43.5172
c4444eeeeeeeeee:::::d	chr6:30550070-30550359(+)$1	289	111	132	36.5344
EEYYEEEEE~~~~DDDD}DDD	chr8:98725797-98726102(+)$1	305	150	171	32.9137
^^^^^^^^^^^^^^^^^^^^^	chr20:40161786-40162097(-)$1	311	129	150	30.1551
::::EEEEECCC{DDDD{CCC	chr2:203167635-203167880(+)$1	245	6	27	37.1379
:::::::::::::::::::::	chr7:134617935-134618251(+)$1	316	148	169	30.9310
fdddd55555ccc::::::::	chr14:32563395-32563704(+)$1	309	147	168	30.8448
:::::::::::::::::::::	chr14:23549641-23549923(-)$1	282	39	60	36.0172
xxxxddddggggggg333ccc	chr6:4042624-4042903(+)$1	279	111	132	32.9999
e:::::FFFFFFCCC:::::b	chr4:2930060-2930421(+)$1	361	158	179	34.2068
++++++++++++cccoooooo	chr3:37366516-37366819(+)$1	303	64	85	27.4827
C}DDDD~~~~EEEEE}A~~~~	chr20:40161929-40162187(-)$1	258	219	240	30.1551
2dddd:::::::::::::eee	chr5:179151675-179151885(+)$1	210	41	62	35.7586
:::::::::::::::::::::	chr22:41650240-41650506(-)$1	266	62	83	39.8103
qqqqqqqqccc::::::::JJ	chr14:21896007-21896274(-)$1	267	141	162	28.9482
d++++++++++++++++++++	chr2:172582023-172582307(+)$1	284	102	123	32.6551
ee22a]ccc333ccc:::hhh	chr22:36907448-36907728(-)$1	280	156	177	38.8620
:::::::::::::::::::::	chr5:891645-891913(-)$1	268	88	109	40.8448
J}A:::::::ggggggg"""e	chr20:17640793-17641070(-)$1	277	90	111	32.2241
:::::::::::::::::::::	chr6:44217972-44218199(+)$1	227	123	144	31.5344
~~BBYYDDDD:::eeeeeppp	chr1:21071934-21072242(-)$1	308	135	156	33.1724
:ccc[ffffff####ffffff	chr3:142757654-142757904(+)$1	250	127	148	31.0172
oooooobb]gggggggFFFFF	chr2:232577051-232577258(+)$1	207	99	120	28.8620
hhhhhhFFFFFF::::::ccc	chr12:76442880-76443133(-)$1	253	108	129	32.5689
dd]ffffff:::::::::EEE	chr2:153528871-153529202(-)$1	331	122	143	36.9655
ggggg::::::::ggggggg!	chr1:27105560-27105826(+)$1	266	147	168	37.2241
c]dddd:FFFFFFYYGGGGGG	chr1:38435140-38435477(-)$1	337	129	150	34.1206
@@@@@@@@@@@EEEEE}FFFF	chr10:120809983-120810269(-)$1	286	187	208	31.4482
="""a^^^^^^^^^^^^^^^^	chr9:100773452-100773712(+)$1	260	98	119	37.1379
55555hhhhhhhh]a22dddd	chr17:3721612-3721951(-)$1	339	140	161	39.1206
FFFDDDD}DDDDYYBB:::bb	chr1:146756937-146757204(+)$1	267	184	205	27.1379
EEBBLLLCCC{DDDD::::::	chr2:232326182-232326405(-)$1	223	24	45	30.7586
oooooiiiiiiiii]bb::::	chr14:35550124-35550392(+)$1	268	102	123	41.7068
ppppeeeee::cccttttttt	chr17:38317905-38318179(+)$1	274	183	204	29.6379
::::::::::::::bbooooo	chr12:104341026-104341238(+)$1	212	121	142	32.1379

#DB
.....................	chr17:78261510-78261766(+)$1	1	107	128	37.0517
(...(................	chr9:100773512-100773772(+)$1	1	38	59	37.1379
.))))...)))))).)).)))	chr2:219134027-219134360(-)$1	1	137	158	36.7931
........((((((....(((	chr2:232325279-232325482(-)$1	1	2	23	31.8793
))....))))).)).).))..	chr12:6879221-6879443(+)$1	1	108	129	39.4655
.....................	chr20:60711810-60712092(-)$1	1	134	155	30.8448
(..............))))))	chr2:232577075-232577323(+)$1	1	75	96	28.8620
..((.((....)).))..)))	chr1:186295155-186295471(-)$1	1	124	145	31.1896
(((.((((....((((.(...	chr1:46072131-46072374(+)$1	1	67	88	30.7586
)))..................	chr2:153525552-153525889(-)$1	1	157	178	34.7241
.......))))).((((((..	chr11:65830793-65831103(+)$1	1	148	169	39.3793
........)..).))))....	chr2:27592254-27592521(-)$1	1	154	175	27.8275
..................)))	chr16:19725372-19725632(-)$1	1	143	164	32.1379
.......))))))).))))))	chrX:154005022-154005279(+)$1	1	67	88	44.2068
.....................	chr14:102551125-102551383(-)$1	1	202	223	40.1551
))....))))).)).).))))	chr12:6879273-6879484(+)$1	1	56	77	39.4655
.....................	chr14:39649824-39650094(+)$1	1	81	102	30.6724
.(((((((((((..(((..((	chr10:101590068-101590290(+)$1	1	8	29	30.1551
...................))	chr11:10795517-10795815(+)$1	1	111	132	26.2758
.....................	chr1:16891204-16891509(-)$1	1	152	173	32.9137
))..))))))........(((	chr16:3785930-3786209(-)$1	1	106	127	29.3793
...................((	chr6:44218131-44218373(+)$1	1	41	62	34.2931
......)..))..........	chr12:56814703-56815025(-)$1	1	178	199	29.8103
)))).....))))))))))).	chr1:235377094-235377443(-)$1	1	165	186	43.5172
)....)))))))))).....(	chr6:30550070-30550359(+)$1	1	111	132	36.5344
))..)))))....)))).)))	chr8:98725797-98726102(+)$1	1	150	171	32.9137
.....................	chr20:40161786-40162097(-)$1	1	129	150	30.1551
....((((((((.((((.(((	chr2:203167635-203167880(+)$1	1	6	27	37.1379
.....................	chr7:134617935-134618251(+)$1	1	148	169	30.9310
))))).....)))........	chr14:32563395-32563704(+)$1	1	147	168	30.8448
.....................	chr14:23549641-23549923(-)$1	1	39	60	36.0172
....)))))))))))...)))	chr6:4042624-4042903(+)$1	1	111	132	32.9999
).....(((((((((.....(	chr4:2930060-2930421(+)$1	1	158	179	34.2068
............(((......	chr3:37366516-37366819(+)$1	1	64	85	27.4827
).))))....))))).)....	chr20:40161929-40162187(-)$1	1	219	240	30.1551
.)))).............(((	chr5:179151675-179151885(+)$1	1	41	62	35.7586
.....................	chr22:41650240-41650506(-)$1	1	62	83	39.8103
........)))........))	chr14:21896007-21896274(-)$1	1	141	162	28.9482
(....................	chr2:172582023-172582307(+)$1	1	102	123	32.6551
))..).)))...)))...(((	chr22:36907448-36907728(-)$1	1	156	177	38.8620
.....................	chr5:891645-891913(-)$1	1	88	109	40.8448
).).......(((((((...(	chr20:17640793-17641070(-)$1	1	90	111	32.2241
.....................	chr6:44217972-44218199(+)$1	1	123	144	31.5344
..))..))))...(((((...	chr1:21071934-21072242(-)$1	1	135	156	33.1724
.(((.((((((....((((((	chr3:142757654-142757904(+)$1	1	127	148	31.0172
......)).))))))))))))	chr2:232577051-232577258(+)$1	1	99	120	28.8620
))))))((((((......(((	chr12:76442880-76443133(-)$1	1	108	129	32.5689
)).)))))).........(((	chr2:153528871-153529202(-)$1	1	122	143	36.9655
)))))........(((((((.	chr1:27105560-27105826(+)$1	1	147	168	37.2241
).)))).))))))..))))))	chr1:38435140-38435477(-)$1	1	129	150	34.1206
...........))))).))))	chr10:120809983-120810269(-)$1	1	187	208	31.4482
(...(................	chr9:100773452-100773712(+)$1	1	98	119	37.1379
.....)))))))).)..))))	chr17:3721612-3721951(-)$1	1	140	161	39.1206
))))))).))))..))...((	chr1:146756937-146757204(+)$1	1	184	205	27.1379
((((...(((.((((......	chr2:232326182-232326405(-)$1	1	24	45	30.7586
.....))))))))).))....	chr14:35550124-35550392(+)$1	1	102	123	41.7068
....)))))..(((.......	chr17:38317905-38318179(+)$1	1	183	204	29.6379
..............((.....	chr12:104341026-104341238(+)$1	1	121	142	32.1379

#PSSM
A : 0.36	a : 0.32	U : 0.10	g : 0.10	G : 0.08	u : 0.01	
G : 0.43	g : 0.41	A : 0.06	a : 0.03	c : 0.01	U : 0.01	C : 0.01	
a : 0.46	A : 0.41	G : 0.08	U : 0.03	
A : 0.41	a : 0.34	U : 0.08	g : 0.08	G : 0.01	u : 0.01	C : 0.01	c : 0.01	
G : 0.41	g : 0.39	a : 0.06	A : 0.06	C : 0.01	U : 0.01	c : 0.01	
A : 0.48	a : 0.41	g : 0.06	U : 0.01	G : 0.01	
a : 0.39	A : 0.37	G : 0.12	g : 0.05	u : 0.03	C : 0.01	
G : 0.46	g : 0.43	a : 0.05	A : 0.03	C : 0.01	
A : 0.48	a : 0.46	C : 0.03	c : 0.01	
A : 0.39	a : 0.37	G : 0.10	g : 0.05	u : 0.03	U : 0.01	c : 0.01	
g : 0.44	G : 0.41	C : 0.05	A : 0.05	a : 0.03	
A : 0.44	a : 0.43	C : 0.05	g : 0.05	G : 0.01	
G : 0.25	A : 0.22	g : 0.20	a : 0.15	u : 0.10	C : 0.01	c : 0.01	U : 0.01	
G : 0.48	g : 0.39	a : 0.06	A : 0.03	u : 0.01	
a : 0.46	A : 0.44	G : 0.03	U : 0.01	g : 0.01	C : 0.01	
A : 0.29	a : 0.22	U : 0.17	g : 0.12	u : 0.12	G : 0.05	c : 0.01	
g : 0.46	G : 0.46	A : 0.03	a : 0.01	C : 0.01	
a : 0.48	A : 0.44	G : 0.05	C : 0.01	
a : 0.46	A : 0.39	U : 0.05	G : 0.05	g : 0.01	C : 0.01	
g : 0.43	G : 0.41	A : 0.06	a : 0.05	U : 0.01	C : 0.01	
A : 0.49	a : 0.46	g : 0.01	G : 0.01	

#score	1961.9310344827563
#seq	58
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_transcript_m1_run2.nuc.txt

#NT
CUGGA	chr1:159890048-159890256(-)$1	208	32	37	15.0000
CUGGA	chr13:21751288-21751507(+)$1	219	134	139	15.0000
cugga	chrX:67873547-67873918(+)$1	371	277	282	15.0000
CUGGA	chr1:39908431-39908680(+)$1	249	36	41	15.0000
CUGGA	chr19:55857800-55858085(+)$1	285	125	130	15.0000
CUGGA	chr20:36779246-36779494(-)$1	248	49	54	15.0000
CUGGA	chr1:154524778-154525036(-)$1	258	55	60	15.0000
CUGGA	chr2:97278152-97278401(-)$1	249	197	202	15.0000
CUGGA	chr6:160211892-160212100(+)$1	208	192	197	15.0000
CUGGA	chr16:70560473-70560702(+)$1	229	52	57	15.0000
CUGGA	chr1:1696584-1696859(-)$1	275	106	111	15.0000
CUGGA	chr8:48729918-48730158(-)$1	240	79	84	15.0000
CUGGA	chr5:72188917-72189172(+)$1	255	79	84	15.0000
CUGGA	chr16:56419788-56420035(-)$1	247	80	85	15.0000
CUGGA	chr16:19627956-19628229(+)$1	273	137	142	15.0000
CUGGA	chr19:17384876-17385094(+)$1	218	90	95	15.0000
CUGGA	chr19:13209783-13210021(-)$1	238	102	107	15.0000
CUGGA	chr19:49469535-49469755(+)$1	220	59	64	15.0000
CUGGA	chr3:184020712-184020951(+)$1	239	77	82	15.0000
CUGGA	chr21:48068317-48068556(+)$1	239	148	153	15.0000
CUGGA	chr22:41642570-41642777(-)$1	207	114	119	15.0000
CUGGA	chr6:89322422-89322677(-)$1	255	177	182	15.0000
CUGGA	chr5:176859606-176859841(+)$1	235	39	44	15.0000
CUGGA	chr3:38051865-38052115(-)$1	250	20	25	15.0000
CUGGA	chr6:13802381-13802638(-)$1	257	110	115	15.0000
CUGGA	chrX:153283358-153283595(-)$1	237	115	120	15.0000
CUGGA	chr19:36604559-36604783(-)$1	224	114	119	15.0000
CUGGA	chr17:47780448-47780751(-)$1	303	273	278	15.0000
CUGGA	chr15:34546486-34546771(-)$1	285	183	188	15.0000
cugga	chr22:49845593-49845869(-)$1	276	29	34	15.0000
CUGGA	chr21:40552194-40552418(-)$1	224	117	122	15.0000
CUGGA	chr6:71562213-71562467(+)$1	254	91	96	15.0000
CUGGA	chr1:36929344-36929551(-)$1	207	188	193	15.0000
CUGGA	chr7:56120014-56120235(+)$1	221	114	119	15.0000
CUGGA	chr14:105916411-105916618(+)$1	207	81	86	15.0000
CUGGA	chr1:36929329-36929544(-)$1	215	181	186	15.0000
CUGGA	chr4:59868-60094(+)$1	226	117	122	15.0000
CUGGA	chr19:812114-812356(+)$1	242	168	173	15.0000
CUGGA	chr19:41838049-41838280(-)$1	231	154	159	15.0000
CUGGA	chr2:178096095-178096373(-)$1	278	196	201	15.0000
CUGGA	chrX:119293151-119293408(+)$1	257	71	76	15.0000
CUGGA	chr19:48887489-48887705(-)$1	216	109	114	15.0000
CUGGA	chr19:19164965-19165223(+)$1	258	0	5	15.0000
CUGGA	chr6:27100970-27101183(+)$1	213	45	50	15.0000

#otherMatches

#Struct PSSM
EEEE:	chr9:123579497-123579717(-)$1	220	193	198	15.0000
fffll	chr1:159890048-159890256(-)$1	208	32	37	15.0000
::FFF	chr13:21751288-21751507(+)$1	219	134	139	15.0000
yyyyy	chrX:67873547-67873918(+)$1	371	277	282	15.0000
ffffq	chr1:39908431-39908680(+)$1	249	36	41	15.0000
ccc((	chr19:55857800-55858085(+)$1	285	125	130	15.0000
GGGGG	chr20:36779246-36779494(-)$1	248	49	54	15.0000
{CCC{	chr1:154524778-154525036(-)$1	258	55	60	15.0000
GGGGG	chr2:97278152-97278401(-)$1	249	197	202	15.0000
dddd]	chr6:160211892-160212100(+)$1	208	192	197	15.0000
A{EEE	chr16:70560473-70560702(+)$1	229	52	57	15.0000
ccccc	chr1:1696584-1696859(-)$1	275	106	111	15.0000
{CCC:	chr8:48729918-48730158(-)$1	240	79	84	15.0000
[dddd	chr5:72188917-72189172(+)$1	255	79	84	15.0000
rrrrr	chr16:56419788-56420035(-)$1	247	80	85	15.0000
ggggg	chr16:19627956-19628229(+)$1	273	137	142	15.0000
KKJJJ	chr19:17384876-17385094(+)$1	218	90	95	15.0000
ff$$$	chr19:13209783-13210021(-)$1	238	102	107	15.0000
eeeev	chr19:49469535-49469755(+)$1	220	59	64	15.0000
fff::	chr3:184020712-184020951(+)$1	239	77	82	15.0000
2ccc]	chr21:48068317-48068556(+)$1	239	148	153	15.0000
""ccc	chr22:41642570-41642777(-)$1	207	114	119	15.0000
:EEEE	chr6:89322422-89322677(-)$1	255	177	182	15.0000
dddd:	chr5:176859606-176859841(+)$1	235	39	44	15.0000
eeeec	chr3:38051865-38052115(-)$1	250	20	25	15.0000
bccc[	chr6:13802381-13802638(-)$1	257	110	115	15.0000
eeee[	chrX:153283358-153283595(-)$1	237	115	120	15.0000
mccc]	chr19:36604559-36604783(-)$1	224	114	119	15.0000
hh:EE	chr17:47780448-47780751(-)$1	303	273	278	15.0000
cceee	chr15:34546486-34546771(-)$1	285	183	188	15.0000
++bb"	chr22:49845593-49845869(-)$1	276	29	34	15.0000
ddd[a	chr21:40552194-40552418(-)$1	224	117	122	15.0000
c[a!!	chr6:71562213-71562467(+)$1	254	91	96	15.0000
eeeem	chr1:36929344-36929551(-)$1	207	188	193	15.0000
fffff	chr7:56120014-56120235(+)$1	221	114	119	15.0000
hhhh]	chr14:105916411-105916618(+)$1	207	81	86	15.0000
eeee:	chr1:36929329-36929544(-)$1	215	181	186	15.0000
JJJJ:	chr4:59868-60094(+)$1	226	117	122	15.0000
ooeee	chr19:812114-812356(+)$1	242	168	173	15.0000
c[fff	chr19:41838049-41838280(-)$1	231	154	159	15.0000
iiiii	chr2:178096095-178096373(-)$1	278	196	201	15.0000
fff!!	chrX:119293151-119293408(+)$1	257	71	76	15.0000
ooccc	chr19:48887489-48887705(-)$1	216	109	114	15.0000
DDDDO	chr19:19164965-19165223(+)$1	258	0	5	15.0000
emmmm	chr6:27100970-27101183(+)$1	213	45	50	15.0000

#DB
)))).	chr9:123579497-123579717(-)$1	1	193	198	15.0000
(((..	chr1:159890048-159890256(-)$1	1	32	37	15.0000
..)))	chr13:21751288-21751507(+)$1	1	134	139	15.0000
.....	chrX:67873547-67873918(+)$1	1	277	282	15.0000
((((.	chr1:39908431-39908680(+)$1	1	36	41	15.0000
(((..	chr19:55857800-55858085(+)$1	1	125	130	15.0000
(((((	chr20:36779246-36779494(-)$1	1	49	54	15.0000
.(((.	chr1:154524778-154525036(-)$1	1	55	60	15.0000
)))))	chr2:97278152-97278401(-)$1	1	197	202	15.0000
)))).	chr6:160211892-160212100(+)$1	1	192	197	15.0000
(.(((	chr16:70560473-70560702(+)$1	1	52	57	15.0000
(((((	chr1:1696584-1696859(-)$1	1	106	111	15.0000
.(((.	chr8:48729918-48730158(-)$1	1	79	84	15.0000
.((((	chr5:72188917-72189172(+)$1	1	79	84	15.0000
.....	chr16:56419788-56420035(-)$1	1	80	85	15.0000
)))))	chr16:19627956-19628229(+)$1	1	137	142	15.0000
..(((	chr19:17384876-17385094(+)$1	1	90	95	15.0000
((...	chr19:13209783-13210021(-)$1	1	102	107	15.0000
((((.	chr19:49469535-49469755(+)$1	1	59	64	15.0000
)))..	chr3:184020712-184020951(+)$1	1	77	82	15.0000
.))).	chr21:48068317-48068556(+)$1	1	148	153	15.0000
..(((	chr22:41642570-41642777(-)$1	1	114	119	15.0000
.))))	chr6:89322422-89322677(-)$1	1	177	182	15.0000
)))).	chr5:176859606-176859841(+)$1	1	39	44	15.0000
(((((	chr3:38051865-38052115(-)$1	1	20	25	15.0000
)(((.	chr6:13802381-13802638(-)$1	1	110	115	15.0000
((((.	chrX:153283358-153283595(-)$1	1	115	120	15.0000
.))).	chr19:36604559-36604783(-)$1	1	114	119	15.0000
)).))	chr17:47780448-47780751(-)$1	1	273	278	15.0000
))(((	chr15:34546486-34546771(-)$1	1	183	188	15.0000
..((.	chr22:49845593-49845869(-)$1	1	29	34	15.0000
(((.(	chr21:40552194-40552418(-)$1	1	117	122	15.0000
(.(..	chr6:71562213-71562467(+)$1	1	91	96	15.0000
((((.	chr1:36929344-36929551(-)$1	1	188	193	15.0000
(((((	chr7:56120014-56120235(+)$1	1	114	119	15.0000
)))).	chr14:105916411-105916618(+)$1	1	81	86	15.0000
)))).	chr1:36929329-36929544(-)$1	1	181	186	15.0000
((((.	chr4:59868-60094(+)$1	1	117	122	15.0000
..)))	chr19:812114-812356(+)$1	1	168	173	15.0000
(.(((	chr19:41838049-41838280(-)$1	1	154	159	15.0000
(((((	chr2:178096095-178096373(-)$1	1	196	201	15.0000
(((..	chrX:119293151-119293408(+)$1	1	71	76	15.0000
..)))	chr19:48887489-48887705(-)$1	1	109	114	15.0000
((((.	chr19:19164965-19165223(+)$1	1	0	5	15.0000
(....	chr6:27100970-27101183(+)$1	1	45	50	15.0000

#PSSM
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	

#score	675.0000000000001
#seq	45
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_UTR_m3_run2.nuc.txt

#NT
AUUUGUAUUUU	chr5:96367918-96368168(+)$1	250	43	54	19.7543
UUUUAUAUUCU	chr7:128411349-128411588(+)$1	239	118	129	16.2456
AGUUUUAUUUU	chr8:62415285-62415542(-)$1	257	181	192	14.8421
UUUUGUAAUUA	chr19:49464853-49465088(+)$1	235	134	145	15.1929
UUUUUUCUCUU	chr4:155525741-155526001(-)$1	260	78	89	13.4385
AUUAGUAUUUA	chr4:74321269-74321504(+)$1	235	44	55	12.0350
UUUCGUAUUUG	chr2:85770459-85770718(+)$1	259	111	122	13.7894
AUUUUUAUUUA	chr5:132216271-132216534(-)$1	263	192	203	15.9824
AUUUGUAUGUU	chr3:149683690-149683950(-)$1	260	135	146	15.8070
AUUUAUAUAUU	chr17:77807098-77807334(-)$1	236	17	28	14.6666
UUUUUUAUUGU	chr1:228285813-228286040(+)$1	227	133	144	17.1228
CUUUGCAUUUU	chr20:4168113-4168398(+)$1	285	215	226	14.4035
UUUUGUAUGau	chr1:236139089-236139331(-)$1	242	4	15	13.6140
auuauuauuuu	chr2:36777955-36778232(+)$1	277	88	99	14.9298
UUUGGUAUUUU	chr2:238674160-238674415(+)$1	255	73	84	17.1228
UUUUUUAUCUU	chr3:145787441-145787673(-)$1	232	177	188	17.2982
UUUUAUAUAUG	chr1:8072899-8073149(-)$1	250	134	145	13.1754
uuuuguacuuu	chr19:36729375-36729632(+)$1	257	71	82	18.0000
UUUUGAAUUUC	chr3:127788578-127788819(+)$1	241	30	41	13.7894
CUUUAUAAUUU	chr2:220047669-220047957(+)$1	288	91	102	14.3157
UUCUCUAUUUU	chr17:70120952-70121192(+)$1	240	2	13	15.4561
UUUUGGCUUUU	chr7:6501043-6501310(-)$1	267	109	120	13.5263
UUUUAUAAUUC	chr8:22879453-22879705(-)$1	252	228	239	13.7017
uuuuuucuuuu	chr15:29992780-29993028(-)$1	248	66	77	17.2105
UUUUAUAUAUU	chr10:98281351-98281588(-)$1	237	62	73	16.4210
AUUUUUAUUUU	chr11:130014481-130014721(+)$1	240	46	57	19.3157
AUUUUUAUUUU	chr11:130014314-130014556(+)$1	242	213	224	19.3157
UUUUCUUCUUU	chr10:102122199-102122416(+)$1	217	97	108	12.3859
AUUUUUAAUUG	chr10:45471643-45471929(-)$1	286	112	123	13.0877
UUUUUGCUUUU	chr16:19132576-19132799(+)$1	223	5	16	13.0877
UUUUGGAGUUU	chr2:27422365-27422620(-)$1	255	101	112	13.7894
UUUUUUAUUUA	chr16:72819575-72819788(-)$1	213	36	47	17.7368
UUUGUUAUUUU	chr2:85835432-85835722(-)$1	290	39	50	16.6842
UUUUGUAUCCU	chr20:18541449-18541736(+)$1	287	165	176	13.7894
UUUUUUAAUGG	chr1:183905514-183905763(-)$1	249	10	21	10.8947
UUUUGUAUUUU	chr5:42800181-42800391(-)$1	210	10	21	21.5087
auuuuaauuuu	chr17:38327003-38327263(+)$1	260	79	90	15.1052
AUCUUUACUUU	chr4:26433756-26434002(+)$1	246	90	101	11.4210
UUUUAUAUUUG	chr13:48835341-48835588(+)$1	247	208	219	16.9473
AUAUUUAUUUA	chr6:142766888-142767175(+)$1	287	225	236	11.6842
UUUUGUAAAUU	chr4:187509196-187509476(-)$1	280	61	72	14.7543
UCUUGUAAUUU	chr6:64290902-64291135(+)$1	233	78	89	14.0526
AUUUUUAUUUC	chr7:2704226-2704472(+)$1	246	93	104	15.8070
ACUUAUAUUUU	chr5:179157586-179157827(+)$1	241	178	189	13.9649
UUUUCUUUUUU	chr17:66527767-66528013(+)$1	246	87	98	15.8947
GUUUAUAUUUU	chr10:43881513-43881771(-)$1	258	84	95	17.2105
AUUUUUUUUUU	chr1:35649671-35649933(-)$1	262	165	176	15.3684
UUUUCUGUUUU	chr8:30536520-30536770(-)$1	250	2	13	15.8070
UUAUGUAAUUU	chr6:163994290-163994502(+)$1	212	48	59	14.2280
UGUUGCAUUUU	chr3:13358780-13359071(-)$1	291	180	191	12.8245
UUUUGUAACUU	chr2:85545085-85545333(-)$1	248	14	25	14.7543
UUUUGUAUUGU	chr2:74441938-74442221(+)$1	283	204	215	17.5614
UUUUGUAUUAU	chr1:145442465-145442702(+)$1	237	44	55	17.5614
GUUUCUAGUUU	chr2:20232372-20232606(-)$1	234	130	141	13.2631
UUAUGUAUUCU	chr7:103112676-103112919(-)$1	243	103	114	13.2631
UUUUGUAUUAG	chr3:167727746-167727993(-)$1	247	61	72	14.3157

#otherMatches

#Struct PSSM
iiiiiiitttt	chr6:1314270-1314518(+)$1	248	61	72	14.5789
CCKKCCC::::	chr5:96367918-96368168(+)$1	250	43	54	19.7543
HHHHHH:::::	chr7:128411349-128411588(+)$1	239	118	129	16.2456
!!dddd[dddd	chr8:62415285-62415542(-)$1	257	181	192	14.8421
mmmmdddd:::	chr19:49464853-49465088(+)$1	235	134	145	15.1929
EE:::::::::	chr4:155525741-155526001(-)$1	260	78	89	13.4385
GGGGGG:::::	chr4:74321269-74321504(+)$1	235	44	55	12.0350
####ccc[eee	chr2:85770459-85770718(+)$1	259	111	122	13.7894
:::::::::::	chr5:132216271-132216534(-)$1	263	192	203	15.9824
iii####dddd	chr3:149683690-149683950(-)$1	260	135	146	15.8070
[gggggggooo	chr17:77807098-77807334(-)$1	236	17	28	14.6666
hhhhhhhlllh	chr1:228285813-228286040(+)$1	227	133	144	17.1228
>>>>dddd333	chr20:4168113-4168398(+)$1	285	215	226	14.4035
FFFF::dddd^	chr1:236139089-236139331(-)$1	242	4	15	13.6140
frrrrrrrrrf	chr2:36777955-36778232(+)$1	277	88	99	14.9298
eeeiiiiiiii	chr2:238674160-238674415(+)$1	255	73	84	17.1228
ZZZHHHHHHHH	chr3:145787441-145787673(-)$1	232	177	188	17.2982
ffff55555a]	chr1:8072899-8073149(-)$1	250	134	145	13.1754
=========22	chr19:36729375-36729632(+)$1	257	71	82	18.0000
dd::hhhhhhh	chr3:127788578-127788819(+)$1	241	30	41	13.7894
c"""ddddqqq	chr2:220047669-220047957(+)$1	288	91	102	14.3157
EEEELLLHHHH	chr17:70120952-70121192(+)$1	240	2	13	15.4561
::::dddd"""	chr7:6501043-6501310(-)$1	267	109	120	13.5263
:::::::::::	chr8:22879453-22879705(-)$1	252	228	239	13.7017
oooeeeee:::	chr15:29992780-29993028(-)$1	248	66	77	17.2105
$$$$hhhhhhh	chr10:98281351-98281588(-)$1	237	62	73	16.4210
LLLDDDDNNNN	chr11:130014481-130014721(+)$1	240	46	57	19.3157
EEE______JJ	chr11:130014314-130014556(+)$1	242	213	224	19.3157
]ccc22bb777	chr10:102122199-102122416(+)$1	217	97	108	12.3859
b!!eeeeennn	chr10:45471643-45471929(-)$1	286	112	123	13.0877
:::JJJJJJJJ	chr16:19132576-19132799(+)$1	223	5	16	13.0877
:::eeeeeooo	chr2:27422365-27422620(-)$1	255	101	112	13.7894
::::::::::F	chr16:72819575-72819788(-)$1	213	36	47	17.7368
"""a!!bbnnn	chr2:85835432-85835722(-)$1	290	39	50	16.6842
JJJJJJJJJdd	chr20:18541449-18541736(+)$1	287	165	176	13.7894
eeeooooooee	chr1:183905514-183905763(-)$1	249	10	21	10.8947
J{BBggggggg	chr5:42800181-42800391(-)$1	210	10	21	21.5087
:::::::::::	chr17:38327003-38327263(+)$1	260	79	90	15.1052
dd]ffffff33	chr4:26433756-26434002(+)$1	246	90	101	11.4210
eeeee333===	chr13:48835341-48835588(+)$1	247	208	219	16.9473
ffff[bbuuuu	chr6:142766888-142767175(+)$1	287	225	236	11.6842
::ccc[dddd"	chr4:187509196-187509476(-)$1	280	61	72	14.7543
fnnnnnfffff	chr6:64290902-64291135(+)$1	233	78	89	14.0526
g++++++++++	chr7:2704226-2704472(+)$1	246	93	104	15.8070
qqccc4444dd	chr5:179157586-179157827(+)$1	241	178	189	13.9649
4444bb22ccc	chr17:66527767-66528013(+)$1	246	87	98	15.8947
fffff[dddd!	chr10:43881513-43881771(-)$1	258	84	95	17.2105
:::::::::::	chr1:35649671-35649933(-)$1	262	165	176	15.3684
::::::HHHHH	chr8:30536520-30536770(-)$1	250	2	13	15.8070
hhhhhhh]ccc	chr6:163994290-163994502(+)$1	212	48	59	14.2280
::::FFFFFF?	chr3:13358780-13359071(-)$1	291	180	191	12.8245
GGGGGGCCCKK	chr2:85545085-85545333(-)$1	248	14	25	14.7543
::::FFFFFF}	chr2:74441938-74442221(+)$1	283	204	215	17.5614
hhhhhhh####	chr1:145442465-145442702(+)$1	237	44	55	17.5614
ff!!aoooooo	chr2:20232372-20232606(-)$1	234	130	141	13.2631
GGGGG{CCC{E	chr7:103112676-103112919(-)$1	243	103	114	13.2631
:::::hhhhhh	chr3:167727746-167727993(-)$1	247	61	72	14.3157

#DB
(((((((....	chr6:1314270-1314518(+)$1	1	61	72	14.5789
((..(((....	chr5:96367918-96368168(+)$1	1	43	54	19.7543
((((((.....	chr7:128411349-128411588(+)$1	1	118	129	16.2456
..((((.((((	chr8:62415285-62415542(-)$1	1	181	192	14.8421
....))))...	chr19:49464853-49465088(+)$1	1	134	145	15.1929
)).........	chr4:155525741-155526001(-)$1	1	78	89	13.4385
((((((.....	chr4:74321269-74321504(+)$1	1	44	55	12.0350
....(((.(((	chr2:85770459-85770718(+)$1	1	111	122	13.7894
...........	chr5:132216271-132216534(-)$1	1	192	203	15.9824
(((....((((	chr3:149683690-149683950(-)$1	1	135	146	15.8070
.(((((((...	chr17:77807098-77807334(-)$1	1	17	28	14.6666
(((((((...)	chr1:228285813-228286040(+)$1	1	133	144	17.1228
....))))...	chr20:4168113-4168398(+)$1	1	215	226	14.4035
((((..((((.	chr1:236139089-236139331(-)$1	1	4	15	13.6140
(.........)	chr2:36777955-36778232(+)$1	1	88	99	14.9298
)))))))))))	chr2:238674160-238674415(+)$1	1	73	84	17.1228
...))))))))	chr3:145787441-145787673(-)$1	1	177	188	17.2982
)))).....).	chr1:8072899-8073149(-)$1	1	134	145	13.1754
)))))))))..	chr19:36729375-36729632(+)$1	1	71	82	18.0000
))..(((((((	chr3:127788578-127788819(+)$1	1	30	41	13.7894
(...((((...	chr2:220047669-220047957(+)$1	1	91	102	14.3157
((((...((((	chr17:70120952-70121192(+)$1	1	2	13	15.4561
....((((...	chr7:6501043-6501310(-)$1	1	109	120	13.5263
...........	chr8:22879453-22879705(-)$1	1	228	239	13.7017
...)))))...	chr15:29992780-29993028(-)$1	1	66	77	17.2105
....(((((((	chr10:98281351-98281588(-)$1	1	62	73	16.4210
...((((....	chr11:130014481-130014721(+)$1	1	46	57	19.3157
)))......))	chr11:130014314-130014556(+)$1	1	213	224	19.3157
.)))..))...	chr10:102122199-102122416(+)$1	1	97	108	12.3859
(..(((((...	chr10:45471643-45471929(-)$1	1	112	123	13.0877
...((((((((	chr16:19132576-19132799(+)$1	1	5	16	13.0877
...(((((...	chr2:27422365-27422620(-)$1	1	101	112	13.7894
..........(	chr16:72819575-72819788(-)$1	1	36	47	17.7368
...(..((...	chr2:85835432-85835722(-)$1	1	39	50	16.6842
(((((((((((	chr20:18541449-18541736(+)$1	1	165	176	13.7894
(((......))	chr1:183905514-183905763(-)$1	1	10	21	10.8947
(.(((((((((	chr5:42800181-42800391(-)$1	1	10	21	21.5087
...........	chr17:38327003-38327263(+)$1	1	79	90	15.1052
)).))))))..	chr4:26433756-26434002(+)$1	1	90	101	11.4210
)))))...)))	chr13:48835341-48835588(+)$1	1	208	219	16.9473
((((.((....	chr6:142766888-142767175(+)$1	1	225	236	11.6842
..(((.((((.	chr4:187509196-187509476(-)$1	1	61	72	14.7543
(.....)))))	chr6:64290902-64291135(+)$1	1	78	89	14.0526
(..........	chr7:2704226-2704472(+)$1	1	93	104	15.8070
..)))....))	chr5:179157586-179157827(+)$1	1	178	189	13.9649
....))..)))	chr17:66527767-66528013(+)$1	1	87	98	15.8947
(((((.((((.	chr10:43881513-43881771(-)$1	1	84	95	17.2105
...........	chr1:35649671-35649933(-)$1	1	165	176	15.3684
......(((((	chr8:30536520-30536770(-)$1	1	2	13	15.8070
))))))).)))	chr6:163994290-163994502(+)$1	1	48	59	14.2280
....)))))).	chr3:13358780-13359071(-)$1	1	180	191	12.8245
(((((((((..	chr2:85545085-85545333(-)$1	1	14	25	14.7543
....)))))).	chr2:74441938-74442221(+)$1	1	204	215	17.5614
(((((((....	chr1:145442465-145442702(+)$1	1	44	55	17.5614
((..(......	chr2:20232372-20232606(-)$1	1	130	141	13.2631
(((((.(((.(	chr7:103112676-103112919(-)$1	1	103	114	13.2631
.....((((((	chr3:167727746-167727993(-)$1	1	61	72	14.3157

#PSSM
U : 0.59	A : 0.24	C : 0.05	a : 0.03	u : 0.03	G : 0.03	
U : 0.85	u : 0.07	G : 0.03	C : 0.03	
U : 0.84	u : 0.07	A : 0.05	C : 0.03	
U : 0.85	u : 0.05	G : 0.03	A : 0.01	C : 0.01	a : 0.01	
G : 0.40	U : 0.28	A : 0.15	C : 0.08	u : 0.05	g : 0.01	
U : 0.82	u : 0.05	G : 0.05	C : 0.03	A : 0.01	a : 0.01	
A : 0.78	C : 0.05	a : 0.05	U : 0.05	G : 0.03	c : 0.01	
U : 0.70	A : 0.15	u : 0.05	C : 0.03	G : 0.03	c : 0.01	
U : 0.75	C : 0.07	A : 0.07	u : 0.07	G : 0.03	
U : 0.77	u : 0.07	C : 0.05	G : 0.05	A : 0.03	a : 0.01	
U : 0.66	G : 0.10	A : 0.08	u : 0.08	C : 0.05	

#score	863.8070175438608
#seq	57
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_CDS_m1_run2.nuc.txt

#NT
uuauuuuauuuuauuuuuuuuugagacagagucuuacucugucaacccaggcuggagugcaauggcacgaucuuggcccacugcaaccuccgcuuccuggguucaagcaguucuccugccucagccucccaaguagcugggauuacagguaccugccaccacacc	chr12:107360961-107361220(+)$1	259	70	235	284.1666
aguuucuuuuguuuuguuuuguuuugagacagucucauccuguugcucacguuggagugcaguggugugaucauggcccacugcagucuugaccuccugggcucaagugauccucccaccucagccuccugaguagcugggacuacaggugcaugcuaccaugcc	chr2:170662387-170662661(+)$1	274	88	253	280.8333
UUAAAAUAAuuuuuuuuuuuuuucagacggagucucgcucugucgcccaggcuggggugcaguggcacggucucggcucacugcaagcuccgccucuuggguccacgccauucuccggccucagccuccugaguaucugggacuacaggcgccugccaccguguc	chr2:38585687-38585938(-)$1	251	82	247	301.6666
uuuuuuuuuuuuuuuucuuuugugagauggagucgcucucugucgcccaggcuggagugcaauggaguggucuuggcucacugcaacguccgccucccggauucaagugauucucuugccucagccucccgaguagcugggauuacaggcacacgccaccaugcc	chr8:64101182-64101435(+)$1	253	84	249	314.1666
aaaauggauuuuuuuuuuuuuuuuugacagggucuugcucuguggcccaggcuggagcacaguggugccaucacggcucacugcagccuccauuuccugggcucaagugauccucuugccucagccucccaaguagcugggaccacagaagcgugccaccacacc	chr17:80214237-80214490(-)$1	253	79	244	295.8333

#otherMatches

#Struct PSSM
hhhhh::::::::::::::::::::gggggggooooooggggggg:::dddd[eeeeeffffffbb[bbmmmmbbbb]ffffff]eeeee]dddd:::::dddd[ccc[eeeee"""ccclllccc333eeeee]ccc]dddd::::BBYYCCCddddooooood	chr2:242263731-242263967(+)$1	236	66	231	281.6666
c666666ffffff]ccc:::::::hhhhhhhhlllhhhhhhhhhhhhhhhh[eeeeedddd[ccc!!bbmmmmbb22ccc]dddd22eeeee333hhhhhhhh:::dddd####dddd[ffffff!!ammmma22ffffff4444dddd333dddd::cccmmmm	chr12:107360961-107361220(+)$1	259	70	235	284.1666
:eeeee^^^^^^^^^^^^^^^^^^^eeeeeggggggg####hhhhhhhh####dddd[bb[a[dddd[ffffffffffffzzzzzzzzzzzzzzzzzffffff333ffffff4444dddd]a]bbddddhhhhhhhhggggggg:ccc!!eeeeemmmmeeeeec	chr2:170662387-170662661(+)$1	274	88	253	280.8333
:::::::::::::::::::::::::hhhhhhhhlllhhhhhhhheeeeeccc[eeeeeffffffbb[bbmmmmbbbb]ffffff22eeeeeccc333eeeee::::cccpppppppccceeeeemmmmeeeee::::::dddd[bb[cccmmmmccc333bbddd	chr2:38585687-38585938(-)$1	251	82	247	301.6666
ffff::::::::::::::::bb[a[gggggggnnnnnggggggg]a]bbEEEEE{BB{DDDD{EEEEE{A{DDDDbbnnnnnbb:::eeeeennnnneeeee:DDDDA}EEEEE}DDDDBBEEEEEeeeeeooooooeeeee:::ffffffssssssssssffff	chr8:64101182-64101435(+)$1	253	84	249	314.1666
ggggggg:::::::::::::::::::ggggggglllggggggghhhhhhhh[eeeeea[ffffff[cccnnnnncccffffff22a]eeeee333hhhhhhhh:::DDDD~~~~DDDD::eeeee!!ammmma22eeeeeFFFFFFEEEEE:cccooooooccc:	chr17:80214237-80214490(-)$1	253	79	244	295.8333

#DB
)))))....................(((((((......)))))))...((((.(((((((((((((.((....)))).)))))).))))).)))).....((((.(((.(((((...(((...)))...))))).))).))))....))..)))((((......)	chr2:242263731-242263967(+)$1	1	66	231	281.6666
)......)))))).))).......((((((((...))))))))((((((((.(((((((((.(((..((....))..))).))))..)))))...))))))))...((((....((((.((((((..(....)..))))))....))))...))))..(((....	chr12:107360961-107361220(+)$1	1	70	235	284.1666
.(((((...................)))))(((((((....((((((((....((((.((.(.((((.((((((((((((.................))))))...))))))....)))).).))))))))))))))))))))).(((..(((((....))))))	chr2:170662387-170662661(+)$1	1	88	253	280.8333
.........................((((((((...))))))))((((((((.(((((((((((((.((....)))).))))))..))))))))...)))))....(((.......)))(((((....)))))......((((.((.(((....)))...)))))	chr2:38585687-38585938(-)$1	1	82	247	301.6666
))))................((.(.(((((((.....))))))).).))(((((.((.((((.(((((.(.((((((.....))...(((((.....))))).))))).))))).)))))))))))(((((......)))))...((((((..........))))	chr8:64101182-64101435(+)$1	1	84	249	314.1666
)))))))...................(((((((...)))))))((((((((.((((((.((((((.(((.....)))))))))..).)))))...))))))))...))))....))))..(((((..(....)..)))))))))))))))).(((......))).	chr17:80214237-80214490(-)$1	1	79	244	295.8333

#PSSM
u : 0.33	a : 0.33	G : 0.16	U : 0.16	
U : 0.33	u : 0.33	g : 0.16	a : 0.16	
a : 0.33	u : 0.33	U : 0.16	A : 0.16	
u : 0.50	G : 0.16	A : 0.16	a : 0.16	
u : 0.66	U : 0.16	A : 0.16	
u : 0.33	C : 0.16	c : 0.16	A : 0.16	g : 0.16	
u : 0.66	U : 0.16	g : 0.16	
u : 0.50	a : 0.33	A : 0.16	
u : 0.83	A : 0.16	
u : 0.99	
u : 0.83	g : 0.16	
u : 0.99	
u : 0.83	a : 0.16	
u : 0.99	
u : 0.99	
u : 0.83	g : 0.16	
u : 0.83	c : 0.16	
u : 0.99	
u : 0.99	
u : 0.99	
u : 0.83	g : 0.16	
u : 0.83	g : 0.16	
u : 0.83	g : 0.16	
g : 0.33	u : 0.33	a : 0.16	c : 0.16	
a : 0.50	u : 0.33	g : 0.16	
g : 0.83	a : 0.16	
a : 0.83	c : 0.16	
c : 0.50	a : 0.16	g : 0.16	u : 0.16	
g : 0.66	a : 0.33	
g : 0.66	a : 0.16	c : 0.16	
g : 0.50	a : 0.50	
g : 0.66	a : 0.16	u : 0.16	
u : 0.66	g : 0.16	c : 0.16	
c : 0.66	u : 0.33	
u : 0.66	c : 0.16	g : 0.16	
c : 0.50	u : 0.33	a : 0.16	
u : 0.33	g : 0.33	c : 0.16	a : 0.16	
c : 0.50	u : 0.33	g : 0.16	
u : 0.66	c : 0.33	
c : 0.66	u : 0.33	
u : 0.66	c : 0.16	g : 0.16	
g : 0.66	u : 0.33	
u : 0.66	g : 0.16	c : 0.16	
u : 0.33	c : 0.33	a : 0.16	g : 0.16	
g : 0.66	c : 0.16	a : 0.16	
c : 0.83	a : 0.16	
c : 0.83	u : 0.16	
c : 0.99	
a : 0.99	
g : 0.83	c : 0.16	
g : 0.99	
c : 0.83	u : 0.16	
u : 0.99	
g : 0.99	
g : 0.99	
a : 0.83	g : 0.16	
g : 0.99	
u : 0.83	c : 0.16	
g : 0.83	a : 0.16	
c : 0.99	
a : 0.99	
g : 0.66	a : 0.33	
u : 0.99	
g : 0.99	
g : 0.99	
c : 0.50	u : 0.33	a : 0.16	
a : 0.50	g : 0.50	
u : 0.50	c : 0.50	
g : 0.83	c : 0.16	
a : 0.66	g : 0.33	
u : 0.99	
c : 0.99	
u : 0.66	a : 0.33	
c : 0.50	u : 0.50	
g : 0.83	a : 0.16	
g : 0.99	
c : 0.99	
u : 0.66	c : 0.33	
c : 0.99	
a : 0.99	
c : 0.99	
u : 0.99	
g : 0.99	
c : 0.99	
a : 0.99	
a : 0.66	g : 0.33	
c : 0.66	u : 0.16	g : 0.16	
c : 0.66	u : 0.16	g : 0.16	
u : 0.99	
c : 0.83	u : 0.16	
c : 0.66	u : 0.16	g : 0.16	
g : 0.66	a : 0.33	
c : 0.83	u : 0.16	
c : 0.66	u : 0.33	
u : 0.99	
c : 0.99	
c : 0.83	u : 0.16	
u : 0.66	c : 0.33	
g : 0.83	a : 0.16	
g : 0.83	c : 0.16	
g : 0.83	a : 0.16	
u : 0.66	c : 0.33	
u : 0.83	c : 0.16	
c : 0.99	
a : 0.99	
a : 0.83	c : 0.16	
g : 0.99	
c : 0.50	u : 0.50	
g : 0.66	a : 0.16	c : 0.16	
a : 0.83	g : 0.16	
u : 0.99	
u : 0.66	c : 0.33	
c : 0.99	
u : 0.83	c : 0.16	
c : 0.99	
c : 0.66	u : 0.33	
u : 0.66	c : 0.16	g : 0.16	
g : 0.83	a : 0.16	
c : 0.83	g : 0.16	
c : 0.99	
u : 0.99	
c : 0.99	
a : 0.99	
g : 0.99	
c : 0.99	
c : 0.99	
u : 0.99	
c : 0.99	
c : 0.99	
c : 0.50	u : 0.33	g : 0.16	
g : 0.66	a : 0.33	
a : 0.99	
g : 0.99	
u : 0.99	
a : 0.99	
g : 0.83	u : 0.16	
c : 0.99	
u : 0.99	
g : 0.99	
g : 0.99	
g : 0.99	
a : 0.99	
c : 0.66	u : 0.33	
u : 0.83	c : 0.16	
a : 0.83	g : 0.16	
c : 0.99	
a : 0.99	
g : 0.99	
g : 0.66	a : 0.33	
c : 0.50	u : 0.33	a : 0.16	
a : 0.50	g : 0.50	
c : 0.99	
g : 0.33	c : 0.33	a : 0.33	
u : 0.83	c : 0.16	
g : 0.99	
c : 0.99	
c : 0.83	u : 0.16	
a : 0.99	
c : 0.99	
c : 0.99	
a : 0.83	g : 0.16	
c : 0.50	u : 0.50	
g : 0.66	a : 0.33	
c : 0.83	u : 0.16	
c : 0.83	u : 0.16	

#score	1758.3333333333326
#seq	6
#width	165
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_transcript_m3_run2.nuc.txt

#NT
ccaugcccagcuaauuuuuguguuuuuaguagagacgggguuucaccauguuggucaggcuggucuugaacuccugacguggugaucc	chr22:20053017-20053338(+)$1	321	0	88	185.1538
ccaugccuggcuaauuuuuguauuuuuaguagagaugggguuucaccauguuagccaggcuggucucgaacuccugaccucaggugau	chr9:125579299-125579581(-)$1	282	7	95	198.2307
cacgcucagcuaauuuuuuguauuuuuaguagagacgggguuucauuguguuggccaggcuggucucgaacuccuggccucaagugau	chr1:19543704-19543950(-)$1	246	44	132	163.6153
ccacgcccagcuaauuuuuguauuuuuaguagagacgggguuucaccauauuggccaggcugguuucgaacugcugaccugguggucc	chr1:225976215-225976515(+)$1	300	55	143	183.2307
ccaugccuggcuaauuuuuguguuuuuaguagagacaggguuucaccauguuggucgggcuggucucaaacuccugaccucuugaucc	chr1:160966213-160966484(-)$1	271	64	152	184.3846
ccacgccugacuaauuuuuguauuucuaguaaagaugggguuucacuauguuggccaggcuggucuugaacuccucaccucaggugau	chr17:57280685-57280979(+)$1	294	53	141	180.9230
ccacgcuggcuaauuuuuuguauuuuuaguagagacgggguuucaccguguuagccaggauggucucgaucuccugaccuuguaaucc	chr19:46206706-46206976(+)$1	270	35	123	162.0769
ccaugcccagcuaauuuuuguauuuuuaguagagacaggguuucuccauguugcccaggcugaucucaaacuccugggcucaagcaau	chr16:81063264-81063537(+)$1	273	68	156	183.6153
cuacgcccagcuaguuuuuguauuuucaguagagacgggguuucaccauguuggccaggauggucucgaucucuugaccucaugaucu	chr11:768115-768362(-)$1	247	29	117	182.0769
cccggcuaaguuuuuuuugguauuuuuaguagacacaggguuucaccauguuggcuagacuggucucaaacuccugaccucaagugau	chr1:10517339-10517617(-)$1	278	23	111	168.2307
ccacgcccagcuaauuuuuguauuuuuaauagagauaagguuucgccauguuggccaggcuggucuugaacuccugaccucaagugau	chr6:42045630-42045888(+)$1	258	151	239	190.1538
ccacgcccagcuaauuuuuugcauuuuaguagagacgggguuucaccguguugcccaggcuguucuaaaacuccugaacucagguaau	chr1:38327383-38327652(-)$1	269	80	168	171.3076

#otherMatches

#Struct PSSM
offffff:ccc[bb[ffffff[cccnnnnnccc]ffffff]bb]ccc:FFFFFF}DDDDYYDDDD|||||||FFFFFF:::::bb[dd	chrX:77083804-77084067(-)$1	263	140	228	183.6153
:::::::::eeeeettttttttttteeeee::::::EEEEE:============eeeeennnnneeeee4444============:::	chr22:20053017-20053338(+)$1	321	0	88	185.1538
pppppppdddd:::::::::::ffffff[ffffff[ffffff[ffffff####ggggggg[bb####eeeeeffffffbb[dddd%%%	chr9:125579299-125579581(-)$1	282	7	95	198.2307
c[bbccc[eeeeeuuuuuuuuuuuueeeee]ccc]bb]ccc:eeeee[bb!!ggggggg!!cccnnnnncccggggggg]bbeeeee:	chr1:19543704-19543950(-)$1	246	44	132	163.6153
66666hhhhhhhh>>>>>>>>>>>>>>>cccdddd:GGGGGGG:::::::JJJJJJJJJJ:ddddssssssssssddddggggggg[f	chr1:225976215-225976515(+)$1	300	55	143	183.2307
meeeee:EEEEE{BB{FFFFFF:::::::::::ddddbboooooobb]ddddggggggg!!ddddssssssssssdddd]ggggggg:	chr1:160966213-160966484(-)$1	271	64	152	184.3846
LLGGGGGGGKKHHHHHHHH:::::::::::::EEEEEGGGGGGGPPPPPPPEEEEE{CCCDDDD::::::::::eeeeellleeeee:	chr17:57280685-57280979(+)$1	294	53	141	180.9230
ddd!!iiiiiiiii++++++++++++++++++++ddddpppppppddddiiiiiiiii22dddd22bb88888888ccc]dddd]bb2	chr19:46206706-46206976(+)$1	270	35	123	162.0769
66666hhhhhhhh:::ccc[ddddllldddd]cccDDDDAYYDDDD______FFFFFFcccbb[ddddoooooodddd]bb]ccceee	chr16:81063264-81063537(+)$1	273	68	156	183.6153
FFKKDDDD{HHHHHHHHKKHHHHHHHHccc[ccc[dddd&&&&&&&dddd!!bb[eeeee[cccmmmmccceeeee]bb]dddd5555	chr11:768115-768362(-)$1	247	29	117	182.0769
JJJJJJJJJMMMMEEEEEKKGGGGGGG{EEEEEMMMMFFFFFFKKA{EEEEEFFFFFF:::ddddssssssssssdddd::::ccc""	chr1:10517339-10517617(-)$1	278	23	111	168.2307
offffff:::bb[hhhhhhhhppppppphhhhhhhh]bbDDDD}CCC:::::dddddddd[ccceeeeesssssssssseeeee5555	chr6:42045630-42045888(+)$1	258	151	239	190.1538
d4444hhhhhhhh:::::HHHHHHHHYYFFFFFFddddpppppppddddEEEEE::FFFFFF::::::::::ddddmmmmdddd::ee	chr1:38327383-38327652(-)$1	269	80	168	171.3076

#DB
.)))))).(((.((.((((((.(((.....))).)))))).)).))).)))))).))))..)))).......)))))).....((.((	chrX:77083804-77084067(-)$1	1	140	228	183.6153
.........(((((...........)))))......(((((.(((((((((((((((((.....)))))....))))))))))))...	chr22:20053017-20053338(+)$1	1	0	88	185.1538
.......))))...........((((((.((((((.((((((.((((((....(((((((.((....(((((((((((((.((((...	chr9:125579299-125579581(-)$1	1	7	95	198.2307
(.(((((.(((((............))))).))).)).))).(((((.((..(((((((..(((.....)))))))))).))))))).	chr1:19543704-19543950(-)$1	1	44	132	163.6153
.....))))))))...............))))))).(((((((.......((((((((((.((((..........))))(((((((.(	chr1:225976215-225976515(+)$1	1	55	143	183.2307
.))))).(((((.((.((((((...........((((((......)).))))(((((((..((((..........)))).))))))).	chr1:160966213-160966484(-)$1	1	64	152	184.3846
..(((((((..((((((((.............((((((((((((.......(((((.(((((((..........(((((...))))).	chr17:57280685-57280979(+)$1	1	53	141	180.9230
(((..(((((((((....................((((.......)))))))))))))..))))..))........))).)))).)).	chr19:46206706-46206976(+)$1	1	35	123	162.0769
.....))))))))...(((.((((...)))).))))))))..))))......))))))(((((.((((......)))).)).)))(((	chr16:81063264-81063537(+)$1	1	68	156	183.6153
((..((((.((((((((..(((((((((((.(((.((((.......((((..((.(((((.(((....)))))))).)).))))....	chr11:768115-768362(-)$1	1	29	117	182.0769
(((((((((....(((((..(((((((.(((((....((((((..(.(((((((((((...((((..........))))....(((..	chr1:10517339-10517617(-)$1	1	23	111	168.2307
.))))))...((.((((((((.......)))))))).)))))).))).....((((((((.((((((((..........)))))....	chr6:42045630-42045888(+)$1	1	151	239	190.1538
)....)))))))).....))))))))..))))))((((.......)))))))))..((((((..........((((....))))..((	chr1:38327383-38327652(-)$1	1	80	168	171.3076

#PSSM
c : 0.99	
c : 0.84	a : 0.07	u : 0.07	
a : 0.84	c : 0.15	
c : 0.46	u : 0.38	g : 0.15	
g : 0.92	c : 0.07	
c : 0.92	u : 0.07	
c : 0.84	u : 0.15	
c : 0.46	a : 0.23	u : 0.23	g : 0.07	
a : 0.53	g : 0.46	
g : 0.76	c : 0.15	a : 0.07	
c : 0.76	u : 0.23	
u : 0.84	a : 0.15	
a : 0.92	u : 0.07	
a : 0.69	u : 0.23	g : 0.07	
u : 0.99	
u : 0.99	
u : 0.99	
u : 0.99	
u : 0.92	g : 0.07	
g : 0.92	u : 0.07	
u : 0.92	g : 0.07	
a : 0.69	g : 0.23	c : 0.07	
u : 0.92	a : 0.07	
u : 0.99	
u : 0.99	
u : 0.92	c : 0.07	
u : 0.92	c : 0.07	
a : 0.99	
g : 0.92	a : 0.07	
u : 0.99	
a : 0.99	
g : 0.92	a : 0.07	
a : 0.99	
g : 0.92	c : 0.07	
a : 0.99	
c : 0.76	u : 0.23	
g : 0.61	a : 0.38	
g : 0.92	a : 0.07	
g : 0.99	
g : 0.99	
u : 0.99	
u : 0.99	
u : 0.99	
c : 0.99	
a : 0.76	g : 0.15	u : 0.07	
c : 0.92	u : 0.07	
c : 0.84	u : 0.15	
a : 0.76	g : 0.23	
u : 0.92	a : 0.07	
g : 0.92	a : 0.07	
u : 0.99	
u : 0.99	
g : 0.84	a : 0.15	
g : 0.76	c : 0.15	u : 0.07	
c : 0.84	u : 0.15	
c : 0.92	u : 0.07	
a : 0.92	g : 0.07	
g : 0.99	
g : 0.92	a : 0.07	
c : 0.84	a : 0.15	
u : 0.99	
g : 0.99	
g : 0.84	a : 0.07	u : 0.07	
u : 0.99	
c : 0.92	u : 0.07	
u : 0.99	
c : 0.61	u : 0.30	a : 0.07	
g : 0.69	a : 0.30	
a : 0.99	
a : 0.84	u : 0.15	
c : 0.99	
u : 0.99	
c : 0.92	g : 0.07	
c : 0.92	u : 0.07	
u : 0.99	
g : 0.92	c : 0.07	
a : 0.76	g : 0.23	
c : 0.76	g : 0.15	a : 0.07	
c : 0.92	g : 0.07	
u : 0.99	
c : 0.76	g : 0.15	u : 0.07	
a : 0.69	g : 0.23	u : 0.07	
a : 0.38	u : 0.38	g : 0.23	
g : 0.92	a : 0.07	
u : 0.53	a : 0.30	g : 0.07	c : 0.07	
g : 0.46	u : 0.38	a : 0.15	
a : 0.61	c : 0.38	
u : 0.69	c : 0.30	

#score	2336.615384615383
#seq	13
#width	88
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_UTR_m2_run2.nuc.txt

#NT
UCA	chr1:220141903-220142184(-)$1	281	59	62	8.9999
UCA	chr16:74339873-74340145(+)$1	272	23	26	8.9999
UCA	chr15:38776916-38777196(+)$1	280	23	26	8.9999
UCA	chr5:33467738-33467995(+)$1	257	34	37	8.9999
UCA	chr11:85669584-85669852(-)$1	268	18	21	8.9999
UCA	chr10:81113601-81113868(+)$1	267	66	69	8.9999
UCA	chr15:66169571-66169829(+)$1	258	21	24	8.9999
UCA	chr11:252776-253072(+)$1	296	46	49	8.9999
UCA	chr3:49449212-49449451(-)$1	239	112	115	8.9999
UCA	chr17:73774360-73774611(-)$1	251	46	49	8.9999
UCA	chr1:161183917-161184233(+)$1	316	20	23	8.9999
UCA	chr2:55199259-55199524(-)$1	265	4	7	8.9999
UCA	chr11:14526452-14526733(-)$1	281	23	26	8.9999
UCA	chr5:130494953-130495234(-)$1	281	17	20	8.9999
UCA	chr11:3022070-3022361(-)$1	291	72	75	8.9999
UCA	chr4:6643972-6644225(+)$1	253	88	91	8.9999
UCA	chr3:33183799-33184051(+)$1	252	25	28	8.9999
UCA	chr7:150910710-150910977(-)$1	267	125	128	8.9999
UCA	chr1:33145213-33145461(+)$1	248	137	140	8.9999
UCA	chr7:7676377-7676620(-)$1	243	3	6	8.9999
UCA	chr2:178084803-178085071(+)$1	268	29	32	8.9999
UCA	chr5:85916384-85916640(+)$1	256	5	8	8.9999
UCA	chr2:65497421-65497699(+)$1	278	18	21	8.9999
UCA	chr5:115249275-115249551(+)$1	276	29	32	8.9999
UCA	chr16:18804350-18804600(-)$1	250	28	31	8.9999
UCA	chr15:90627252-90627477(-)$1	225	60	63	8.9999
UCA	chr2:15770939-15771222(+)$1	283	3	6	8.9999
UCA	chr6:35543305-35543627(-)$1	322	60	63	8.9999
UCA	chr11:34492949-34493195(+)$1	246	68	71	8.9999
UCA	chr12:7079637-7079891(-)$1	254	35	38	8.9999
UCA	chr5:170814763-170815031(+)$1	268	54	57	8.9999
UCA	chr6:30692156-30692373(+)$1	217	31	34	8.9999
UCA	chr4:170650544-170650854(-)$1	310	95	98	8.9999
UCA	chrX:22012649-22012870(+)$1	221	15	18	8.9999
UCA	chr12:123779266-123779532(-)$1	266	19	22	8.9999
UCA	chr8:99054794-99055034(-)$1	240	79	82	8.9999
UCA	chr20:60963264-60963519(+)$1	255	48	51	8.9999
UCA	chr16:75691109-75691372(+)$1	263	0	3	8.9999
UCA	chr9:138824770-138825030(-)$1	260	135	138	8.9999
UCA	chr1:214837172-214837450(+)$1	278	2	5	8.9999
UCA	chr14:100800055-100800304(-)$1	249	16	19	8.9999
UCA	chr10:70706378-70706668(+)$1	290	56	59	8.9999
UCA	chr7:155099913-155100152(+)$1	239	71	74	8.9999
UCA	chr11:116649406-116649685(-)$1	279	56	59	8.9999
UCA	chr11:78147392-78147682(-)$1	290	66	69	8.9999
UCA	chr18:673199-673451(+)$1	252	2	5	8.9999
UCA	chr22:24967875-24968123(+)$1	248	4	7	8.9999
UCA	chr16:67263221-67263505(-)$1	284	229	232	8.9999
UCA	chr4:154335955-154336228(+)$1	273	158	161	8.9999
UCA	chr11:2418117-2418446(+)$1	329	50	53	8.9999
UCA	chr19:10244070-10244318(-)$1	248	49	52	8.9999
UCA	chr17:37077711-37077963(+)$1	252	91	94	8.9999
UCA	chr10:51589302-51589561(+)$1	259	78	81	8.9999
UCA	chr19:40325010-40325288(-)$1	278	62	65	8.9999
UCA	chr12:76443398-76443626(-)$1	228	27	30	8.9999
UCA	chr11:118279748-118280005(+)$1	257	45	48	8.9999
UCA	chr20:35240452-35240752(+)$1	300	129	132	8.9999
UCA	chr5:133307715-133307970(-)$1	255	73	76	8.9999
UCA	chr9:80944362-80944629(+)$1	267	57	60	8.9999
UCA	chr11:32623868-32624096(+)$1	228	122	125	8.9999
UCA	chr12:131360544-131360798(+)$1	254	10	13	8.9999
UCA	chr10:103922085-103922356(+)$1	271	14	17	8.9999
UCA	chr11:118272299-118272532(+)$1	233	39	42	8.9999
UCA	chr16:29984168-29984444(+)$1	276	4	7	8.9999
UCA	chr12:98993731-98993957(+)$1	226	128	131	8.9999
UCA	chr12:56510346-56510599(+)$1	253	168	171	8.9999
UCA	chr4:185678020-185678294(-)$1	274	5	8	8.9999
UCA	chr12:98995279-98995513(+)$1	234	20	23	8.9999
UCA	chr9:91931431-91931689(+)$1	258	3	6	8.9999
UCA	chr2:9725098-9725353(-)$1	255	35	38	8.9999
UCA	chr4:183811659-183811915(-)$1	256	55	58	8.9999
UCA	chr17:16284370-16284577(+)$1	207	186	189	8.9999
UCA	chr13:113977543-113977804(+)$1	261	149	152	8.9999
UCA	chr20:56073358-56073611(-)$1	253	26	29	8.9999
UCA	chr2:217070217-217070468(+)$1	251	34	37	8.9999
UCA	chr2:54092434-54092686(-)$1	252	3	6	8.9999
UCA	chr10:5019877-5020214(+)$1	337	178	181	8.9999
UCA	chr5:122165245-122165522(+)$1	277	37	40	8.9999
UCA	chr3:33038278-33038526(-)$1	248	34	37	8.9999
UCA	chr21:46225820-46226086(-)$1	266	10	13	8.9999
UCA	chr11:75115009-75115267(+)$1	258	77	80	8.9999
UCA	chr5:158712803-158713107(+)$1	304	27	30	8.9999
UCA	chr3:186507445-186507691(+)$1	246	8	11	8.9999
UCA	chr1:67877802-67878031(-)$1	229	12	15	8.9999
UCA	chr1:182352155-182352380(-)$1	225	24	27	8.9999
UCA	chrX:65486898-65487199(+)$1	301	6	9	8.9999
UCA	chr14:35786406-35786684(+)$1	278	75	78	8.9999
UCA	chr15:23003128-23003379(+)$1	251	137	140	8.9999
UCA	chr2:148692800-148693072(-)$1	272	9	12	8.9999
UCA	chr10:71075460-71075726(+)$1	266	31	34	8.9999
UCA	chr6:75947530-75947787(-)$1	257	118	121	8.9999
UCA	chr18:19209041-19209293(+)$1	252	64	67	8.9999
UCA	chr17:41167885-41168145(-)$1	260	148	151	8.9999
UCA	chr1:145441159-145441403(+)$1	244	39	42	8.9999
UCA	chr22:29696265-29696518(+)$1	253	21	24	8.9999
UCA	chr6:31803103-31803328(+)$1	225	21	24	8.9999

#otherMatches

#Struct PSSM
ncc	chr11:47186782-47187041(-)$1	259	24	27	8.9999
ddd	chr1:220141903-220142184(-)$1	281	59	62	8.9999
###	chr16:74339873-74340145(+)$1	272	23	26	8.9999
qqq	chr15:38776916-38777196(+)$1	280	23	26	8.9999
dd4	chr5:33467738-33467995(+)$1	257	34	37	8.9999
:::	chr11:85669584-85669852(-)$1	268	18	21	8.9999
DDD	chr10:81113601-81113868(+)$1	267	66	69	8.9999
F{E	chr15:66169571-66169829(+)$1	258	21	24	8.9999
QQD	chr11:252776-253072(+)$1	296	46	49	8.9999
=!!	chr3:49449212-49449451(-)$1	239	112	115	8.9999
HHH	chr17:73774360-73774611(-)$1	251	46	49	8.9999
{CC	chr1:161183917-161184233(+)$1	316	20	23	8.9999
GGG	chr2:55199259-55199524(-)$1	265	4	7	8.9999
qqq	chr11:14526452-14526733(-)$1	281	23	26	8.9999
)))	chr5:130494953-130495234(-)$1	281	17	20	8.9999
eee	chr11:3022070-3022361(-)$1	291	72	75	8.9999
%dd	chr4:6643972-6644225(+)$1	253	88	91	8.9999
ttt	chr3:33183799-33184051(+)$1	252	25	28	8.9999
fff	chr7:150910710-150910977(-)$1	267	125	128	8.9999
eee	chr1:33145213-33145461(+)$1	248	137	140	8.9999
ddd	chr7:7676377-7676620(-)$1	243	3	6	8.9999
ccm	chr2:178084803-178085071(+)$1	268	29	32	8.9999
ccc	chr5:85916384-85916640(+)$1	256	5	8	8.9999
:::	chr2:65497421-65497699(+)$1	278	18	21	8.9999
LJJ	chr5:115249275-115249551(+)$1	276	29	32	8.9999
EEE	chr16:18804350-18804600(-)$1	250	28	31	8.9999
dd3	chr15:90627252-90627477(-)$1	225	60	63	8.9999
:JJ	chr2:15770939-15771222(+)$1	283	3	6	8.9999
g::	chr6:35543305-35543627(-)$1	322	60	63	8.9999
ggg	chr11:34492949-34493195(+)$1	246	68	71	8.9999
$$$	chr12:7079637-7079891(-)$1	254	35	38	8.9999
lll	chr5:170814763-170815031(+)$1	268	54	57	8.9999
+++	chr6:30692156-30692373(+)$1	217	31	34	8.9999
:::	chr4:170650544-170650854(-)$1	310	95	98	8.9999
CC{	chrX:22012649-22012870(+)$1	221	15	18	8.9999
::e	chr12:123779266-123779532(-)$1	266	19	22	8.9999
nee	chr8:99054794-99055034(-)$1	240	79	82	8.9999
ooo	chr20:60963264-60963519(+)$1	255	48	51	8.9999
:HH	chr16:75691109-75691372(+)$1	263	0	3	8.9999
cc3	chr9:138824770-138825030(-)$1	260	135	138	8.9999
FFF	chr1:214837172-214837450(+)$1	278	2	5	8.9999
GGG	chr14:100800055-100800304(-)$1	249	16	19	8.9999
g^^	chr10:70706378-70706668(+)$1	290	56	59	8.9999
:::	chr7:155099913-155100152(+)$1	239	71	74	8.9999
d33	chr11:116649406-116649685(-)$1	279	56	59	8.9999
FFF	chr11:78147392-78147682(-)$1	290	66	69	8.9999
::C	chr18:673199-673451(+)$1	252	2	5	8.9999
eee	chr22:24967875-24968123(+)$1	248	4	7	8.9999
bdd	chr16:67263221-67263505(-)$1	284	229	232	8.9999
!ii	chr4:154335955-154336228(+)$1	273	158	161	8.9999
ooo	chr11:2418117-2418446(+)$1	329	50	53	8.9999
f[c	chr19:10244070-10244318(-)$1	248	49	52	8.9999
fff	chr17:37077711-37077963(+)$1	252	91	94	8.9999
ddd	chr10:51589302-51589561(+)$1	259	78	81	8.9999
:::	chr19:40325010-40325288(-)$1	278	62	65	8.9999
pcc	chr12:76443398-76443626(-)$1	228	27	30	8.9999
ggg	chr11:118279748-118280005(+)$1	257	45	48	8.9999
!!d	chr20:35240452-35240752(+)$1	300	129	132	8.9999
##d	chr5:133307715-133307970(-)$1	255	73	76	8.9999
eee	chr9:80944362-80944629(+)$1	267	57	60	8.9999
:::	chr11:32623868-32624096(+)$1	228	122	125	8.9999
fff	chr12:131360544-131360798(+)$1	254	10	13	8.9999
iii	chr10:103922085-103922356(+)$1	271	14	17	8.9999
ccc	chr11:118272299-118272532(+)$1	233	39	42	8.9999
EEL	chr16:29984168-29984444(+)$1	276	4	7	8.9999
===	chr12:98993731-98993957(+)$1	226	128	131	8.9999
:::	chr12:56510346-56510599(+)$1	253	168	171	8.9999
::G	chr4:185678020-185678294(-)$1	274	5	8	8.9999
CII	chr12:98995279-98995513(+)$1	234	20	23	8.9999
EEE	chr9:91931431-91931689(+)$1	258	3	6	8.9999
:::	chr2:9725098-9725353(-)$1	255	35	38	8.9999
[dd	chr4:183811659-183811915(-)$1	256	55	58	8.9999
ffq	chr17:16284370-16284577(+)$1	207	186	189	8.9999
]dd	chr13:113977543-113977804(+)$1	261	149	152	8.9999
KBB	chr20:56073358-56073611(-)$1	253	26	29	8.9999
fff	chr2:217070217-217070468(+)$1	251	34	37	8.9999
::F	chr2:54092434-54092686(-)$1	252	3	6	8.9999
mbb	chr10:5019877-5020214(+)$1	337	178	181	8.9999
fff	chr5:122165245-122165522(+)$1	277	37	40	8.9999
:::	chr3:33038278-33038526(-)$1	248	34	37	8.9999
::F	chr21:46225820-46226086(-)$1	266	10	13	8.9999
]hh	chr11:75115009-75115267(+)$1	258	77	80	8.9999
lee	chr5:158712803-158713107(+)$1	304	27	30	8.9999
:::	chr3:186507445-186507691(+)$1	246	8	11	8.9999
FFF	chr1:67877802-67878031(-)$1	229	12	15	8.9999
fff	chr1:182352155-182352380(-)$1	225	24	27	8.9999
fff	chrX:65486898-65487199(+)$1	301	6	9	8.9999
d::	chr14:35786406-35786684(+)$1	278	75	78	8.9999
ccc	chr15:23003128-23003379(+)$1	251	137	140	8.9999
DD:	chr2:148692800-148693072(-)$1	272	9	12	8.9999
ccw	chr10:71075460-71075726(+)$1	266	31	34	8.9999
&&&	chr6:75947530-75947787(-)$1	257	118	121	8.9999
cc:	chr18:19209041-19209293(+)$1	252	64	67	8.9999
"""	chr17:41167885-41168145(-)$1	260	148	151	8.9999
ddd	chr1:145441159-145441403(+)$1	244	39	42	8.9999
ggg	chr22:29696265-29696518(+)$1	253	21	24	8.9999
:::	chr6:31803103-31803328(+)$1	225	21	24	8.9999

#DB
.))	chr11:47186782-47187041(-)$1	1	24	27	8.9999
)))	chr1:220141903-220142184(-)$1	1	59	62	8.9999
...	chr16:74339873-74340145(+)$1	1	23	26	8.9999
...	chr15:38776916-38777196(+)$1	1	23	26	8.9999
)).	chr5:33467738-33467995(+)$1	1	34	37	8.9999
...	chr11:85669584-85669852(-)$1	1	18	21	8.9999
(((	chr10:81113601-81113868(+)$1	1	66	69	8.9999
(.(	chr15:66169571-66169829(+)$1	1	21	24	8.9999
..(	chr11:252776-253072(+)$1	1	46	49	8.9999
(..	chr3:49449212-49449451(-)$1	1	112	115	8.9999
(((	chr17:73774360-73774611(-)$1	1	46	49	8.9999
.((	chr1:161183917-161184233(+)$1	1	20	23	8.9999
(((	chr2:55199259-55199524(-)$1	1	4	7	8.9999
...	chr11:14526452-14526733(-)$1	1	23	26	8.9999
...	chr5:130494953-130495234(-)$1	1	17	20	8.9999
(((	chr11:3022070-3022361(-)$1	1	72	75	8.9999
.((	chr4:6643972-6644225(+)$1	1	88	91	8.9999
...	chr3:33183799-33184051(+)$1	1	25	28	8.9999
)))	chr7:150910710-150910977(-)$1	1	125	128	8.9999
(((	chr1:33145213-33145461(+)$1	1	137	140	8.9999
(((	chr7:7676377-7676620(-)$1	1	3	6	8.9999
((.	chr2:178084803-178085071(+)$1	1	29	32	8.9999
(((	chr5:85916384-85916640(+)$1	1	5	8	8.9999
...	chr2:65497421-65497699(+)$1	1	18	21	8.9999
.((	chr5:115249275-115249551(+)$1	1	29	32	8.9999
(((	chr16:18804350-18804600(-)$1	1	28	31	8.9999
)).	chr15:90627252-90627477(-)$1	1	60	63	8.9999
.((	chr2:15770939-15771222(+)$1	1	3	6	8.9999
)..	chr6:35543305-35543627(-)$1	1	60	63	8.9999
(((	chr11:34492949-34493195(+)$1	1	68	71	8.9999
...	chr12:7079637-7079891(-)$1	1	35	38	8.9999
...	chr5:170814763-170815031(+)$1	1	54	57	8.9999
...	chr6:30692156-30692373(+)$1	1	31	34	8.9999
...	chr4:170650544-170650854(-)$1	1	95	98	8.9999
((.	chrX:22012649-22012870(+)$1	1	15	18	8.9999
..(	chr12:123779266-123779532(-)$1	1	19	22	8.9999
.))	chr8:99054794-99055034(-)$1	1	79	82	8.9999
...	chr20:60963264-60963519(+)$1	1	48	51	8.9999
.((	chr16:75691109-75691372(+)$1	1	0	3	8.9999
)).	chr9:138824770-138825030(-)$1	1	135	138	8.9999
(((	chr1:214837172-214837450(+)$1	1	2	5	8.9999
(((	chr14:100800055-100800304(-)$1	1	16	19	8.9999
(..	chr10:70706378-70706668(+)$1	1	56	59	8.9999
...	chr7:155099913-155100152(+)$1	1	71	74	8.9999
)..	chr11:116649406-116649685(-)$1	1	56	59	8.9999
(((	chr11:78147392-78147682(-)$1	1	66	69	8.9999
..(	chr18:673199-673451(+)$1	1	2	5	8.9999
(((	chr22:24967875-24968123(+)$1	1	4	7	8.9999
(((	chr16:67263221-67263505(-)$1	1	229	232	8.9999
.((	chr4:154335955-154336228(+)$1	1	158	161	8.9999
...	chr11:2418117-2418446(+)$1	1	50	53	8.9999
(.(	chr19:10244070-10244318(-)$1	1	49	52	8.9999
)))	chr17:37077711-37077963(+)$1	1	91	94	8.9999
(((	chr10:51589302-51589561(+)$1	1	78	81	8.9999
...	chr19:40325010-40325288(-)$1	1	62	65	8.9999
.))	chr12:76443398-76443626(-)$1	1	27	30	8.9999
(((	chr11:118279748-118280005(+)$1	1	45	48	8.9999
..(	chr20:35240452-35240752(+)$1	1	129	132	8.9999
..(	chr5:133307715-133307970(-)$1	1	73	76	8.9999
(((	chr9:80944362-80944629(+)$1	1	57	60	8.9999
...	chr11:32623868-32624096(+)$1	1	122	125	8.9999
(((	chr12:131360544-131360798(+)$1	1	10	13	8.9999
)))	chr10:103922085-103922356(+)$1	1	14	17	8.9999
)))	chr11:118272299-118272532(+)$1	1	39	42	8.9999
((.	chr16:29984168-29984444(+)$1	1	4	7	8.9999
)))	chr12:98993731-98993957(+)$1	1	128	131	8.9999
...	chr12:56510346-56510599(+)$1	1	168	171	8.9999
..(	chr4:185678020-185678294(-)$1	1	5	8	8.9999
(((	chr12:98995279-98995513(+)$1	1	20	23	8.9999
(((	chr9:91931431-91931689(+)$1	1	3	6	8.9999
...	chr2:9725098-9725353(-)$1	1	35	38	8.9999
.((	chr4:183811659-183811915(-)$1	1	55	58	8.9999
((.	chr17:16284370-16284577(+)$1	1	186	189	8.9999
.))	chr13:113977543-113977804(+)$1	1	149	152	8.9999
.((	chr20:56073358-56073611(-)$1	1	26	29	8.9999
(((	chr2:217070217-217070468(+)$1	1	34	37	8.9999
..(	chr2:54092434-54092686(-)$1	1	3	6	8.9999
.))	chr10:5019877-5020214(+)$1	1	178	181	8.9999
(((	chr5:122165245-122165522(+)$1	1	37	40	8.9999
...	chr3:33038278-33038526(-)$1	1	34	37	8.9999
..(	chr21:46225820-46226086(-)$1	1	10	13	8.9999
.))	chr11:75115009-75115267(+)$1	1	77	80	8.9999
.))	chr5:158712803-158713107(+)$1	1	27	30	8.9999
...	chr3:186507445-186507691(+)$1	1	8	11	8.9999
(((	chr1:67877802-67878031(-)$1	1	12	15	8.9999
(((	chr1:182352155-182352380(-)$1	1	24	27	8.9999
(((	chrX:65486898-65487199(+)$1	1	6	9	8.9999
)..	chr14:35786406-35786684(+)$1	1	75	78	8.9999
)))	chr15:23003128-23003379(+)$1	1	137	140	8.9999
((.	chr2:148692800-148693072(-)$1	1	9	12	8.9999
((.	chr10:71075460-71075726(+)$1	1	31	34	8.9999
...	chr6:75947530-75947787(-)$1	1	118	121	8.9999
)).	chr18:19209041-19209293(+)$1	1	64	67	8.9999
...	chr17:41167885-41168145(-)$1	1	148	151	8.9999
(((	chr1:145441159-145441403(+)$1	1	39	42	8.9999
(((	chr22:29696265-29696518(+)$1	1	21	24	8.9999
...	chr6:31803103-31803328(+)$1	1	21	24	8.9999

#PSSM
U : 0.99	
C : 0.99	
A : 0.99	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_CDS_m1_run2.nuc.txt

#NT
gagcaggagca	chr1:29475170-29475448(-)$1	278	40	51	18.3000
GAGGAGGACGA	chr19:2112752-2113027(-)$1	275	133	144	20.0000
GCGGAGGAGAA	chr22:36685104-36685350(-)$1	246	13	24	18.0000
GAGGAGGAGAA	chr19:15491050-15491342(-)$1	292	128	139	22.6000
GAGAAGGAGCC	chr10:105614882-105615357(-)$1	475	261	272	18.3000
gaggaggaggc	chr19:531688-532046(+)$1	358	117	128	24.4000
GAGGAGGUGGG	chr21:46888057-46888334(+)$1	277	109	120	19.0000
GAGAAGGAGAC	chr1:146756899-146757194(+)$1	295	205	216	18.3000
GAGGAGGAGGU	chr12:133067139-133067463(+)$1	324	248	259	23.2000
GACGAGGAGGC	chr16:72821480-72821761(-)$1	281	12	23	20.4000
GAGAAGGAGCG	chr19:11105402-11105704(+)$1	302	248	259	17.3000
GAGGACGAGAG	chr22:36684266-36684560(-)$1	294	125	136	16.8000
gaggaggagga	chr19:13054508-13054877(+)$1	369	96	107	24.8000
GAAGAGGAGCA	chr3:167750216-167750601(-)$1	385	123	134	18.9000
gaggagggggc	chr20:306478-306743(+)$1	265	159	170	20.0000
GAGGAGGAGUC	chr10:98346487-98346776(-)$1	289	139	150	21.4000
GAAGAGGAGGA	chr6:30548162-30548397(+)$1	235	50	61	21.1000
GAAGAGGAGAG	chr2:120128212-120128479(+)$1	267	238	249	17.5000
gAGGCGGAGGA	chr19:18392132-18392382(-)$1	250	78	89	20.9000
gaggacgagga	chr2:232326150-232326383(-)$1	233	0	11	20.4000
GAAGAGGAGCU	chr6:7581116-7581423(+)$1	307	26	37	17.3000
GAUGAGGAGGA	chr6:30545762-30546056(+)$1	294	201	212	20.7000
gaggaggagga	chr6:157099936-157100207(+)$1	271	70	81	24.8000
GAGGAGGAGGC	chr2:220042985-220043337(+)$1	352	206	217	24.4000
GAGAAGGAGGC	chr12:124885029-124885320(-)$1	291	138	149	20.5000
GAGGAAGAGAG	chr10:120809210-120809438(-)$1	228	84	95	16.8000
GAAGAGGAGGC	chr7:134635024-134635313(+)$1	289	105	116	20.7000
GAGGAGGAGGA	chr20:3175781-3176029(-)$1	248	30	41	24.8000
gaggaggagga	chr5:179151560-179151846(+)$1	286	196	207	24.8000
GAGGUGGAGCU	chr15:72501951-72502233(-)$1	282	45	56	16.7000
gaggaagaggc	chr21:27394055-27394278(-)$1	223	20	31	20.0000
GAGGAGGAGGU	chr20:40161613-40162071(-)$1	458	85	96	23.2000
gaggaggagga	chr17:4575245-4575587(-)$1	342	152	163	24.8000
gaggcggagga	chr19:14201101-14201392(-)$1	291	56	67	20.9000
GAGGAGAAGAC	chr17:1268123-1268451(-)$1	328	255	266	17.6000
GAGGAGGAGGC	chr7:2697819-2698026(+)$1	207	119	130	24.4000
GAGGCGGCGGA	chr19:39138221-39138557(+)$1	336	153	164	16.7000
GAGGCGGAGCA	chr2:101869402-101869713(+)$1	311	145	156	18.7000
GACGAGGAGCU	chr20:306874-307148(+)$1	274	201	212	17.0000
gaggaggagga	chr2:232576572-232576794(+)$1	222	96	107	24.8000
gaggaggcggg	chr1:27022878-27023116(+)$1	238	112	123	19.2000
gcggaggaggc	chr19:2015294-2015607(-)$1	313	133	144	19.8000
GAGGAGGCGGC	chr2:97482321-97482585(+)$1	264	77	88	20.2000
GAGGAGAAGAG	chr19:49994678-49994904(+)$1	226	69	80	16.6000
GAGAAGGAGGA	chr14:73576011-73576301(+)$1	290	111	122	20.9000
gaggaggagga	chr11:62494184-62494480(-)$1	296	74	85	24.8000
GAGGAGGAGGC	chr19:14200626-14200893(-)$1	267	174	185	24.4000
gaggaggaggc	chr19:11553099-11553428(+)$1	329	49	60	24.4000
GAGGCGGAGCC	chr11:67888450-67888744(-)$1	294	127	138	18.3000

#otherMatches

#Struct PSSM
^^^^^^^^^^^	chr6:44219738-44220025(+)$1	287	173	184	22.6000
c22a22a]bb3	chr1:29475170-29475448(-)$1	278	40	51	18.3000
YYBB}BBZZZD	chr19:2112752-2113027(-)$1	275	133	144	20.0000
iiiiiii[ann	chr22:36685104-36685350(-)$1	246	13	24	18.0000
DDDD}DDDDYY	chr19:15491050-15491342(-)$1	292	128	139	22.6000
nnnnbb22eee	chr10:105614882-105615357(-)$1	475	261	272	18.3000
dddd[bb[a[a	chr19:531688-532046(+)$1	358	117	128	24.4000
GGGGGGGEEEE	chr21:46888057-46888334(+)$1	277	109	120	19.0000
::BBYYDDDD}	chr1:146756899-146757194(+)$1	295	205	216	18.3000
d!!a!!eeeee	chr12:133067139-133067463(+)$1	324	248	259	23.2000
BB=========	chr16:72821480-72821761(-)$1	281	12	23	20.4000
iiiiiiibb!!	chr19:11105402-11105704(+)$1	302	248	259	17.3000
bb]ccc22a]f	chr22:36684266-36684560(-)$1	294	125	136	16.8000
CCCOOOOOOCC	chr19:13054508-13054877(+)$1	369	96	107	24.8000
:::::::::::	chr3:167750216-167750601(-)$1	385	123	134	18.9000
ffffffdddda	chr20:306478-306743(+)$1	265	159	170	20.0000
B::::hhhhhh	chr10:98346487-98346776(-)$1	289	139	150	21.4000
rrdddd]bbbb	chr6:30548162-30548397(+)$1	235	50	61	21.1000
ccc333hhhhh	chr2:120128212-120128479(+)$1	267	238	249	17.5000
ggg::eeeee[	chr19:18392132-18392382(-)$1	250	78	89	20.9000
:::::A{CCC{	chr2:232326150-232326383(-)$1	233	0	11	20.4000
EKKBBBB{CCC	chr6:7581116-7581423(+)$1	307	26	37	17.3000
cc]cccFFFFF	chr6:30545762-30546056(+)$1	294	201	212	20.7000
c]a22bb22a]	chr6:157099936-157100207(+)$1	271	70	81	24.8000
ZZEEEEE}BB}	chr2:220042985-220043337(+)$1	352	206	217	24.4000
nnnnna22a::	chr12:124885029-124885320(-)$1	291	138	149	20.5000
:::::ffffff	chr10:120809210-120809438(-)$1	228	84	95	16.8000
cc]bb]eeeee	chr7:134635024-134635313(+)$1	289	105	116	20.7000
cc]affffffd	chr20:3175781-3176029(-)$1	248	30	41	24.8000
+++++++++++	chr5:179151560-179151846(+)$1	286	196	207	24.8000
mmmdddd]ddd	chr15:72501951-72502233(-)$1	282	45	56	16.7000
KCCC::::ddd	chr21:27394055-27394278(-)$1	223	20	31	20.0000
8dddd:::ccc	chr20:40161613-40162071(-)$1	458	85	96	23.2000
CCCKKEEEEE:	chr17:4575245-4575587(-)$1	342	152	163	24.8000
d]dddd]bb22	chr19:14201101-14201392(-)$1	291	56	67	20.9000
ffff8888888	chr17:1268123-1268451(-)$1	328	255	266	17.6000
JJJJJJYYFFF	chr7:2697819-2698026(+)$1	207	119	130	24.4000
555bb:bb[a!	chr19:39138221-39138557(+)$1	336	153	164	16.7000
cccbbpppppp	chr2:101869402-101869713(+)$1	311	145	156	18.7000
ddd[ccc[bb[	chr20:306874-307148(+)$1	274	201	212	17.0000
gggg[ffffff	chr2:232576572-232576794(+)$1	222	96	107	24.8000
22bb]ffffff	chr1:27022878-27023116(+)$1	238	112	123	19.2000
acccccc]hhh	chr19:2015294-2015607(-)$1	313	133	144	19.8000
nnnnnccc]bb	chr2:97482321-97482585(+)$1	264	77	88	20.2000
e:ccc$$$$$b	chr19:49994678-49994904(+)$1	226	69	80	16.6000
+ffffff[a!!	chr14:73576011-73576301(+)$1	290	111	122	20.9000
##bb[bb####	chr11:62494184-62494480(-)$1	296	74	85	24.8000
YYAYYAYYCCC	chr19:14200626-14200893(-)$1	267	174	185	24.4000
hhh!!bb[ggg	chr19:11553099-11553428(+)$1	329	49	60	24.4000
ggggoooooog	chr11:67888450-67888744(-)$1	294	127	138	18.3000

#DB
...........	chr6:44219738-44220025(+)$1	1	173	184	22.6000
)..)..).)).	chr1:29475170-29475448(-)$1	1	40	51	18.3000
..)).))...)	chr19:2112752-2113027(-)$1	1	133	144	20.0000
(((((((.(..	chr22:36685104-36685350(-)$1	1	13	24	18.0000
)))).))))..	chr19:15491050-15491342(-)$1	1	128	139	22.6000
....))..)))	chr10:105614882-105615357(-)$1	1	261	272	18.3000
((((.((.(.(	chr19:531688-532046(+)$1	1	117	128	24.4000
(((((((((((	chr21:46888057-46888334(+)$1	1	109	120	19.0000
..))..)))).	chr1:146756899-146757194(+)$1	1	205	216	18.3000
(..(..(((((	chr12:133067139-133067463(+)$1	1	248	259	23.2000
(((((((((((	chr16:72821480-72821761(-)$1	1	12	23	20.4000
(((((((((..	chr19:11105402-11105704(+)$1	1	248	259	17.3000
)).)))..).)	chr22:36684266-36684560(-)$1	1	125	136	16.8000
(((......((	chr19:13054508-13054877(+)$1	1	96	107	24.8000
...........	chr3:167750216-167750601(-)$1	1	123	134	18.9000
))))))(((((	chr20:306478-306743(+)$1	1	159	170	20.0000
(....((((((	chr10:98346487-98346776(-)$1	1	139	150	21.4000
..)))).))))	chr6:30548162-30548397(+)$1	1	50	61	21.1000
)))...)))))	chr2:120128212-120128479(+)$1	1	238	249	17.5000
)))..(((((.	chr19:18392132-18392382(-)$1	1	78	89	20.9000
.....(.(((.	chr2:232326150-232326383(-)$1	1	0	11	20.4000
(..((((.(((	chr6:7581116-7581423(+)$1	1	26	37	17.3000
)).)))(((((	chr6:30545762-30546056(+)$1	1	201	212	20.7000
).)..))..).	chr6:157099936-157100207(+)$1	1	70	81	24.8000
..))))).)).	chr2:220042985-220043337(+)$1	1	206	217	24.4000
.....)..)..	chr12:124885029-124885320(-)$1	1	138	149	20.5000
.....((((((	chr10:120809210-120809438(-)$1	1	84	95	16.8000
)).)).)))))	chr7:134635024-134635313(+)$1	1	105	116	20.7000
)).))))))))	chr20:3175781-3176029(-)$1	1	30	41	24.8000
...........	chr5:179151560-179151846(+)$1	1	196	207	24.8000
...)))).)))	chr15:72501951-72502233(-)$1	1	45	56	16.7000
.(((....(((	chr21:27394055-27394278(-)$1	1	20	31	20.0000
.))))...(((	chr20:40161613-40162071(-)$1	1	85	96	23.2000
(((..(((((.	chr17:4575245-4575587(-)$1	1	152	163	24.8000
).)))).))..	chr19:14201101-14201392(-)$1	1	56	67	20.9000
)))).......	chr17:1268123-1268451(-)$1	1	255	266	17.6000
))))))..)))	chr7:2697819-2698026(+)$1	1	119	130	24.4000
...)).((.(.	chr19:39138221-39138557(+)$1	1	153	164	16.7000
)))((......	chr2:101869402-101869713(+)$1	1	145	156	18.7000
(((.(((.((.	chr20:306874-307148(+)$1	1	201	212	17.0000
((((.((((((	chr2:232576572-232576794(+)$1	1	96	107	24.8000
..)).))))))	chr1:27022878-27023116(+)$1	1	112	123	19.2000
))))))).)))	chr19:2015294-2015607(-)$1	1	133	144	19.8000
.....))).))	chr2:97482321-97482585(+)$1	1	77	88	20.2000
).(((.....(	chr19:49994678-49994904(+)$1	1	69	80	16.6000
.((((((.(..	chr14:73576011-73576301(+)$1	1	111	122	20.9000
..((.((....	chr11:62494184-62494480(-)$1	1	74	85	24.8000
..)..)..)))	chr19:14200626-14200893(-)$1	1	174	185	24.4000
(((..((.(((	chr19:11553099-11553428(+)$1	1	49	60	24.4000
((((......)	chr11:67888450-67888744(-)$1	1	127	138	18.3000

#PSSM
G : 0.68	g : 0.32	
A : 0.68	a : 0.27	C : 0.02	c : 0.02	
G : 0.54	g : 0.30	A : 0.10	C : 0.04	U : 0.02	
G : 0.60	g : 0.27	A : 0.10	c : 0.02	
A : 0.60	a : 0.27	C : 0.08	U : 0.02	c : 0.02	
G : 0.66	g : 0.25	C : 0.02	c : 0.02	A : 0.02	a : 0.02	
G : 0.66	g : 0.30	A : 0.04	
A : 0.64	a : 0.25	C : 0.04	U : 0.02	g : 0.02	c : 0.02	
G : 0.68	g : 0.30	C : 0.02	
G : 0.34	g : 0.27	A : 0.18	C : 0.16	c : 0.02	U : 0.02	
A : 0.23	C : 0.23	a : 0.18	G : 0.12	c : 0.10	U : 0.10	g : 0.02	

#score	1032.4000000000012
#seq	50
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_UTR_m1_run1.nuc.txt

#NT
GGAGGUGUGGACGGGG	chr8:101963092-101963329(-)$1	237	52	68	17.2105
GGCGGCGAGGGCUGCC	chr1:12656086-12656359(-)$1	273	156	172	16.1578
UGCGGCGCGGGAGUAG	chr6:158244244-158244495(+)$1	251	25	41	15.2807
GGGGGGUCGGGAGGAG	chr12:123997687-123998013(-)$1	326	169	185	15.2807
GGCCGGGCGGGCCUGG	chr20:35491717-35491998(-)$1	281	197	213	16.7719
GGGGGCGCGCGCGCGC	chr6:86352561-86352821(-)$1	260	115	131	16.3333
cgccccgggggcgggg	chr5:154134902-154135257(+)$1	355	73	89	17.4736
CCCGGGGAAGGCGGGG	chr19:4038535-4038770(+)$1	235	43	59	14.8421
GGCGGAGCGGGGGACG	chr1:155532127-155532412(-)$1	285	50	66	16.4210
GGAGGCggggccgggg	chr1:2125972-2126321(-)$1	349	53	69	21.1578
AGGGCGGCGGGCGGGG	chr1:26232540-26232794(-)$1	254	13	29	19.0526
GGCCGCGCGGGCGCAG	chr19:1104622-1104880(+)$1	258	114	130	19.4912
GGGGGCGGGGCCUGGC	chr19:18547928-18548199(-)$1	271	16	32	14.3157
ggcggcgcgggcgggg	chr4:140098113-140098347(-)$1	234	35	51	28.9649
GGCGGCGGGGGUGCGG	chr4:78078310-78078634(+)$1	324	90	106	20.7192
GGAGCCGCGGGCCGAG	chr12:109124817-109125064(-)$1	247	171	187	16.5964
ggcggcggcggcggcg	chr1:1822247-1822549(-)$1	302	76	92	21.5964
GGUUGCGGGGGUGGGG	chr7:1577326-1577614(+)$1	288	39	55	18.3508
GGCCGAGCGGGCGGGA	chr2:54197770-54198043(-)$1	273	130	146	18.4385
GCCGGCGCUGGCGGCC	chr16:3767279-3767620(-)$1	341	173	189	15.2807
GGUGGCGCCUGCGGGG	chr7:150777503-150777865(-)$1	362	99	115	19.8421
cgcggcgcugggggug	chr5:154136560-154136852(+)$1	292	58	74	16.1578
CGAGGCGCGGGCAGGG	chr12:31478334-31478596(-)$1	262	86	102	20.0175
ggggucgcggggggcg	chr8:102217356-102217609(-)$1	253	54	70	17.8245
cggggggcgggagggg	chr20:361825-362062(+)$1	237	27	43	19.6666
CCGGGCGGAGGCGGGG	chr7:5569343-5569620(-)$1	277	84	100	15.9824
GGUGGGGCGGGCGCCG	chr7:6522977-6523228(-)$1	251	107	123	19.6666
CGCUGCGGGAGCGGGG	chr19:2270264-2270523(+)$1	259	54	70	16.4210
GGCCUGGCGGGUGGGG	chr17:62501964-62502237(-)$1	273	68	84	16.7719
GGGGGUCCGGGCGGUG	chr19:19739423-19739658(-)$1	235	193	209	17.6491
GCCGGGGCGAGCUGGG	chr12:109124505-109124766(-)$1	261	73	89	15.8070
GGUAAGGCCGGCGGGG	chr9:131873722-131874006(+)$1	284	187	203	14.9298
GGGGGUGUGGGCGGGG	chr19:1881951-1882179(-)$1	228	60	76	22.2982
GGGGGCCAgggugggg	chr19:50985396-50985651(+)$1	255	66	82	17.9122
GUUcccgcgggcgggg	chr5:176738850-176739091(-)$1	241	121	137	16.5087
GGUGCCGCGGCCUGGG	chr7:5569474-5569812(-)$1	338	121	137	16.0701
ggcggcgggagcggcg	chr9:130331080-130331356(-)$1	276	67	83	20.4561
gggggcgccgccgggg	chr3:14989009-14989269(-)$1	260	52	68	20.8070
agcggcgcgggccggg	chr1:22263565-22263826(-)$1	261	98	114	21.7719
ggcggcggcggcggag	chr9:126030503-126030863(-)$1	360	92	108	21.1578
UUGGGCGCGGGCGUGG	chr7:933171-933479(+)$1	308	87	103	16.6842
cgcggggcggccgcgg	chr16:1429419-1429665(-)$1	246	0	16	17.2105
GGCGGGAGAGGCGGGU	chr8:102217054-102217310(-)$1	256	56	72	13.7017
CGUAGGGUGGGCGGGG	chr11:2152393-2152673(-)$1	280	244	260	16.2456
agaggcgcggggaggg	chr15:64752843-64753080(+)$1	237	21	37	16.1578
GUCGGCGCACGCGCGG	chr7:100027292-100027557(+)$1	265	113	129	14.5789
GGCCGCGCGGAGGAGG	chr8:145149893-145150124(+)$1	231	88	104	14.4912
GGCGGUGAGGGCCGCG	chr16:89787368-89787710(+)$1	342	322	338	17.4736
GGGGGCCGGGGCGCGG	chr19:16187264-16187547(+)$1	283	22	38	18.7894
GCUGGCGCUGGUGGGG	chr1:182360387-182360648(-)$1	261	37	53	16.8596
GGCGGGACUGGCGCGG	chr20:31172321-31172553(-)$1	232	38	54	16.7719
ggcggggacggagggg	chr2:97535532-97535817(-)$1	285	62	78	18.4385
GUCGCCGCCGGCGGGG	chr6:3259155-3259417(+)$1	262	116	132	18.6140
GGCAGGGAUGGCGGGG	chr17:80109773-80110027(-)$1	254	88	104	18.1754
gggggccggcgcggcg	chr1:1510060-1510323(-)$1	263	129	145	15.1929
GGCAGGGCGGGCUGCG	chr1:212458793-212459051(+)$1	258	212	228	17.5614

#otherMatches

#Struct PSSM
gggccc22gggggggb	chr9:139560092-139560350(+)$1	258	84	100	22.4736
eeee$$$$$ccca[ee	chr8:101963092-101963329(-)$1	237	52	68	17.2105
ffffffmmmmffffff	chr1:12656086-12656359(-)$1	273	156	172	16.1578
d[ddddbbmmmmbb]d	chr6:158244244-158244495(+)$1	251	25	41	15.2807
!!ffffffbb[ggggg	chr12:123997687-123998013(-)$1	326	169	185	15.2807
pppppdddd22fffff	chr20:35491717-35491998(-)$1	281	197	213	16.7719
[a[cccccc[bb[bb!	chr6:86352561-86352821(-)$1	260	115	131	16.3333
55555ggggggg]a]b	chr5:154134902-154135257(+)$1	355	73	89	17.4736
MFFFFFFKKEEEEE{C	chr19:4038535-4038770(+)$1	235	43	59	14.8421
ggggggg[bb[bb[ff	chr1:155532127-155532412(-)$1	285	50	66	16.4210
c22iiiiiiiii:DDD	chr1:2125972-2126321(-)$1	349	53	69	21.1578
lllffffffIIIIIII	chr1:26232540-26232794(-)$1	254	13	29	19.0526
ddd!!eeeee[ccc[a	chr19:1104622-1104880(+)$1	258	114	130	19.4912
EEEEE{BBFFFFFFee	chr19:18547928-18548199(-)$1	271	16	32	14.3157
FFFdddd[iiiiiiii	chr4:140098113-140098347(-)$1	234	35	51	28.9649
ff]ggggggg:ggggg	chr4:78078310-78078634(+)$1	324	90	106	20.7192
::dddd[bb!!bbnnn	chr12:109124817-109125064(-)$1	247	171	187	16.5964
44dddd]accc]bb]d	chr1:1822247-1822549(-)$1	302	76	92	21.5964
hhhhhhh]iiiiiiii	chr7:1577326-1577614(+)$1	288	39	55	18.3508
c]ffffff::ffffff	chr2:54197770-54198043(-)$1	273	130	146	18.4385
=]dddddddd[a[acc	chr16:3767279-3767620(-)$1	341	173	189	15.2807
{DDDD{EEEEEfffff	chr7:150777503-150777865(-)$1	362	99	115	19.8421
EEEEE:hhhhhhhh[b	chr5:154136560-154136852(+)$1	292	58	74	16.1578
bb22ffffff4444dd	chr12:31478334-31478596(-)$1	262	86	102	20.0175
mmmmffffff333eee	chr8:102217356-102217609(-)$1	253	54	70	17.8245
FFFFFFFFFFF:ffff	chr20:361825-362062(+)$1	237	27	43	19.6666
::DDDDFFFFFF{HHH	chr7:5569343-5569620(-)$1	277	84	100	15.9824
ggggggg$$$$$ffff	chr7:6522977-6523228(-)$1	251	107	123	19.6666
a[ddddmmmmdddd]a	chr19:2270264-2270523(+)$1	259	54	70	16.4210
bbffffff22dddd:d	chr17:62501964-62502237(-)$1	273	68	84	16.7719
mmmmffffff]dddd4	chr19:19739423-19739658(-)$1	235	193	209	17.6491
===[bbnnnnnbb]==	chr12:109124505-109124766(-)$1	261	73	89	15.8070
c]bb:ddddnnnnndd	chr9:131873722-131874006(+)$1	284	187	203	14.9298
==========[aqqqq	chr19:1881951-1882179(-)$1	228	60	76	22.2982
EEEDDDD{CCCFFFFF	chr19:50985396-50985651(+)$1	255	66	82	17.9122
cc[ddddmmmmddddc	chr5:176738850-176739091(-)$1	241	121	137	16.5087
HH{EEEEE:ddddooo	chr7:5569474-5569812(-)$1	338	121	137	16.0701
!!affffff[bb[bb!	chr9:130331080-130331356(-)$1	276	67	83	20.4561
bb[dddd[========	chr3:14989009-14989269(-)$1	260	52	68	20.8070
obb]bb]bb22ccc]c	chr1:22263565-22263826(-)$1	261	98	114	21.7719
IIIIII}GGGGGGG}D	chr9:126030503-126030863(-)$1	360	92	108	21.1578
ccc]eeeee22dddd]	chr7:933171-933479(+)$1	308	87	103	16.6842
:bbeeeee[eeeee[b	chr16:1429419-1429665(-)$1	246	0	16	17.2105
CCC{ATTTTTTTTTTT	chr8:102217054-102217310(-)$1	256	56	72	13.7017
=uuuuuuuuuuuu===	chr11:2152393-2152673(-)$1	280	244	260	16.2456
%%%%bb[apppppppa	chr15:64752843-64753080(+)$1	237	21	37	16.1578
HHH{BBbbmmmmbb::	chr7:100027292-100027557(+)$1	265	113	129	14.5789
dddd]ffffff333dd	chr8:145149893-145150124(+)$1	231	88	104	14.4912
~DDDD}A}EEEEE}FF	chr16:89787368-89787710(+)$1	342	322	338	17.4736
eeeJJJJJJJJJJJ:E	chr19:16187264-16187547(+)$1	283	22	38	18.7894
ffff]bb]ffffffgg	chr1:182360387-182360648(-)$1	261	37	53	16.8596
JJJJJJJJJ{BB{ANN	chr20:31172321-31172553(-)$1	232	38	54	16.7719
]bbJJJJJJJJJJ{FF	chr2:97535532-97535817(-)$1	285	62	78	18.4385
b]ccc:DDDDgggggg	chr6:3259155-3259417(+)$1	262	116	132	18.6140
bbbb333ccc]a:GGG	chr17:80109773-80110027(-)$1	254	88	104	18.1754
iiiiii[cccrrrrrr	chr1:1510060-1510323(-)$1	263	129	145	15.1929
III:::bb[ddddeee	chr1:212458793-212459051(+)$1	258	212	228	17.5614

#DB
))))))..)))))))(	chr9:139560092-139560350(+)$1	1	84	100	22.4736
((((.....((((.((	chr8:101963092-101963329(-)$1	1	52	68	17.2105
((((((....))))))	chr1:12656086-12656359(-)$1	1	156	172	16.1578
(.((((((....)).)	chr6:158244244-158244495(+)$1	1	25	41	15.2807
..((((((((.(((((	chr12:123997687-123998013(-)$1	1	169	185	15.2807
.....))))..)))))	chr20:35491717-35491998(-)$1	1	197	213	16.7719
.(.((((((.((.((.	chr6:86352561-86352821(-)$1	1	115	131	16.3333
.....))))))).).)	chr5:154134902-154135257(+)$1	1	73	89	17.4736
.((((((..(((((.(	chr19:4038535-4038770(+)$1	1	43	59	14.8421
(((((((.((.((.((	chr1:155532127-155532412(-)$1	1	50	66	16.4210
)..))))))))).(((	chr1:2125972-2126321(-)$1	1	53	69	21.1578
...))))))(((((((	chr1:26232540-26232794(-)$1	1	13	29	19.0526
(((..(((((.(((.(	chr19:1104622-1104880(+)$1	1	114	130	19.4912
(((((.((((((((((	chr19:18547928-18548199(-)$1	1	16	32	14.3157
(((((((.((((((((	chr4:140098113-140098347(-)$1	1	35	51	28.9649
)).))))))).(((((	chr4:78078310-78078634(+)$1	1	90	106	20.7192
..((((.((..((...	chr12:109124817-109125064(-)$1	1	171	187	16.5964
..)))).)))).)).)	chr1:1822247-1822549(-)$1	1	76	92	21.5964
))))))).))))))))	chr7:1577326-1577614(+)$1	1	39	55	18.3508
).))))))..((((((	chr2:54197770-54198043(-)$1	1	130	146	18.4385
).))))((((.(.(((	chr16:3767279-3767620(-)$1	1	173	189	15.2807
.((((.((((((((((	chr7:150777503-150777865(-)$1	1	99	115	19.8421
(((((.((((((((.(	chr5:154136560-154136852(+)$1	1	58	74	16.1578
))..))))))....))	chr12:31478334-31478596(-)$1	1	86	102	20.0175
....))))))...)))	chr8:102217356-102217609(-)$1	1	54	70	17.8245
(((((((((((.((((	chr20:361825-362062(+)$1	1	27	43	19.6666
..((((((((((.(((	chr7:5569343-5569620(-)$1	1	84	100	15.9824
(((((((.....((((	chr7:6522977-6523228(-)$1	1	107	123	19.6666
(.((((....)))).)	chr19:2270264-2270523(+)$1	1	54	70	16.4210
))))))))..)))).(	chr17:62501964-62502237(-)$1	1	68	84	16.7719
....)))))).)))).	chr19:19739423-19739658(-)$1	1	193	209	17.6491
(((.((.....)).))	chr12:109124505-109124766(-)$1	1	73	89	15.8070
).)).((((.....))	chr9:131873722-131874006(+)$1	1	187	203	14.9298
((((((((((.(....	chr19:1881951-1882179(-)$1	1	60	76	22.2982
(((((((.((((((((	chr19:50985396-50985651(+)$1	1	66	82	17.9122
((.((((....)))))	chr5:176738850-176739091(-)$1	1	121	137	16.5087
((.(((((.((((...	chr7:5569474-5569812(-)$1	1	121	137	16.0701
..(((((((.((.((.	chr9:130331080-130331356(-)$1	1	67	83	20.4561
((.((((.((((((((	chr3:14989009-14989269(-)$1	1	52	68	20.8070
.)).)).))..))).)	chr1:22263565-22263826(-)$1	1	98	114	21.7719
)))))).))))))).)	chr9:126030503-126030863(-)$1	1	92	108	21.1578
))).)))))..)))).	chr7:933171-933479(+)$1	1	87	103	16.6842
.(((((((.(((((.(	chr16:1429419-1429665(-)$1	1	0	16	17.2105
(((.(...........	chr8:102217054-102217310(-)$1	1	56	72	13.7017
(............)))	chr11:2152393-2152673(-)$1	1	244	260	16.2456
....((.(.......)	chr15:64752843-64753080(+)$1	1	21	37	16.1578
(((.((((....))..	chr7:100027292-100027557(+)$1	1	113	129	14.5789
)))).))))))...))	chr8:145149893-145150124(+)$1	1	88	104	14.4912
.)))).).))))).))	chr16:89787368-89787710(+)$1	1	322	338	17.4736
)))(((((((((((.(	chr19:16187264-16187547(+)$1	1	22	38	18.7894
)))).)).))))))))	chr1:182360387-182360648(-)$1	1	37	53	16.8596
(((((((((.((.(..	chr20:31172321-31172553(-)$1	1	38	54	16.7719
.))((((((((((.((	chr2:97535532-97535817(-)$1	1	62	78	18.4385
).))).((((((((((	chr6:3259155-3259417(+)$1	1	116	132	18.6140
))))...))).).)))	chr17:80109773-80110027(-)$1	1	88	104	18.1754
((((((.(((......	chr1:1510060-1510323(-)$1	1	129	145	15.1929
)))...((.(((((((	chr1:212458793-212459051(+)$1	1	212	228	17.5614

#PSSM
G : 0.59	g : 0.15	C : 0.08	c : 0.07	U : 0.03	a : 0.03	A : 0.01	
G : 0.57	g : 0.26	C : 0.08	U : 0.07	
C : 0.35	G : 0.17	c : 0.15	U : 0.14	g : 0.08	A : 0.07	a : 0.01	
G : 0.52	g : 0.24	C : 0.08	A : 0.07	c : 0.03	U : 0.03	
G : 0.61	g : 0.21	C : 0.07	c : 0.05	u : 0.01	U : 0.01	A : 0.01	
C : 0.38	c : 0.22	G : 0.22	U : 0.07	g : 0.05	A : 0.03	
G : 0.59	g : 0.28	C : 0.05	A : 0.03	U : 0.01	c : 0.01	
C : 0.43	c : 0.15	g : 0.12	G : 0.12	A : 0.08	U : 0.05	a : 0.01	
G : 0.49	g : 0.22	A : 0.07	c : 0.07	U : 0.07	C : 0.05	u : 0.01	
G : 0.59	g : 0.28	C : 0.03	A : 0.03	U : 0.01	a : 0.01	c : 0.01	
G : 0.61	g : 0.26	c : 0.05	A : 0.03	C : 0.03	
C : 0.54	c : 0.21	U : 0.07	g : 0.05	A : 0.03	G : 0.03	a : 0.03	u : 0.01	
G : 0.52	g : 0.28	U : 0.08	C : 0.05	A : 0.01	c : 0.01	a : 0.01	
G : 0.47	g : 0.29	C : 0.12	U : 0.05	A : 0.03	c : 0.01	
G : 0.49	g : 0.21	C : 0.10	A : 0.07	c : 0.07	u : 0.01	U : 0.01	a : 0.01	
G : 0.57	g : 0.31	C : 0.07	A : 0.01	U : 0.01	

#score	1016.8771929824564
#seq	57
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_CDS_m2_run2.nuc.txt

#NT
GUGG	chr11:62288115-62288367(-)$1	252	135	139	12.0000
GUGG	chr7:150784074-150784305(+)$1	231	121	125	12.0000
GUGG	chr8:94752619-94752863(-)$1	244	41	45	12.0000
GUGG	chr11:61897227-61897497(+)$1	270	108	112	12.0000
GUGG	chr2:236579456-236579716(+)$1	260	245	249	12.0000
GUGG	chr7:99631053-99631312(+)$1	259	219	223	12.0000
GUGG	chr11:62284507-62284753(-)$1	246	41	45	12.0000
GUGG	chr19:50099477-50099791(+)$1	314	0	4	12.0000
GUGG	chr11:62297859-62298103(-)$1	244	34	38	12.0000
GUGG	chr11:62298612-62298873(-)$1	261	63	67	12.0000
GUGG	chr22:21800246-21800498(+)$1	252	76	80	12.0000
GUGG	chr8:94748475-94748693(-)$1	218	39	43	12.0000
GUGG	chr11:62293003-62293252(-)$1	249	103	107	12.0000
GUGG	chr5:71492057-71492300(+)$1	243	101	105	12.0000
GUGG	chr1:16255531-16255795(+)$1	264	54	58	12.0000
GUGG	chr9:138378082-138378341(+)$1	259	66	70	12.0000
GUGG	chr8:144946858-144947100(-)$1	242	102	106	12.0000
GUGG	chr11:62299841-62300082(-)$1	241	21	25	12.0000
GUGG	chr6:30680698-30680991(-)$1	293	116	120	12.0000
GUGG	chr11:62296813-62297044(-)$1	231	127	131	12.0000
GUGG	chr8:144994114-144994365(-)$1	251	103	107	12.0000
GUGG	chr9:134351211-134351462(+)$1	251	104	108	12.0000
GUGG	chr19:58991274-58991529(-)$1	255	45	49	12.0000
GUGG	chr1:1691148-1691392(-)$1	244	173	177	12.0000
GUGG	chr21:46918285-46918596(+)$1	311	186	190	12.0000
GUGG	chr17:62893266-62893544(-)$1	278	91	95	12.0000
GUGG	chr16:30749540-30749794(+)$1	254	2	6	12.0000
GUGG	chr7:100731644-100731898(+)$1	254	84	88	12.0000
GUGG	chr19:49841180-49841500(-)$1	320	72	76	12.0000
GUGG	chr19:58991519-58991818(-)$1	299	25	29	12.0000
GUGG	chr22:21799521-21799780(+)$1	259	197	201	12.0000
GUGG	chr9:138379766-138380020(+)$1	254	191	195	12.0000
GUGG	chr1:144931136-144931405(-)$1	269	120	124	12.0000
GUGG	chr22:26164904-26165229(+)$1	325	254	258	12.0000
GUGG	chr19:58772269-58772509(+)$1	240	21	25	12.0000
GUGG	chr5:139493785-139494059(+)$1	274	12	16	12.0000
GUGG	chr9:140173194-140173433(+)$1	239	89	93	12.0000
GUGG	chr11:62287894-62288150(-)$1	256	113	117	12.0000
GUGG	chrM:14151-14396(-)$1	245	1	5	12.0000
GUGG	chr11:62286126-62286359(-)$1	233	113	117	12.0000
GUGG	chr19:58990973-58991244(-)$1	271	39	43	12.0000
GUGG	chr20:32255318-32255615(-)$1	297	9	13	12.0000
GUGG	chr11:62284255-62284484(-)$1	229	3	7	12.0000
GUGG	chr22:23523116-23523381(+)$1	265	34	38	12.0000
GUGG	chr2:3322504-3322743(-)$1	239	172	176	12.0000
GUGG	chr11:62285137-62285373(-)$1	236	58	62	12.0000
GUGG	chr11:62291291-62291516(-)$1	225	14	18	12.0000
GUGG	chr7:1886855-1887140(-)$1	285	10	14	12.0000
GUGG	chr8:144671309-144671573(-)$1	264	17	21	12.0000
GUGG	chr11:62285474-62285698(-)$1	224	121	125	12.0000
GUGG	chr7:1132112-1132403(-)$1	291	118	122	12.0000
GUGG	chr14:102452439-102452736(+)$1	297	115	119	12.0000
GUGG	chr12:72057249-72057553(-)$1	304	142	146	12.0000
GUGG	chr16:87736015-87736269(-)$1	254	14	18	12.0000
GUGG	chr7:44046883-44047168(-)$1	285	37	41	12.0000
GUGG	chr5:668582-668844(+)$1	262	6	10	12.0000
GUGG	chr11:71724678-71724924(-)$1	246	12	16	12.0000
gugg	chr16:89788065-89788322(+)$1	257	95	99	12.0000
GUGG	chr11:62290903-62291142(-)$1	239	3	7	12.0000
GUGG	chr11:62297246-62297505(-)$1	259	111	115	12.0000
GUGG	chr11:62296654-62296913(-)$1	259	104	108	12.0000
GUGG	chr8:144999339-144999603(-)$1	264	49	53	12.0000
GUGG	chr8:94752665-94752898(-)$1	233	76	80	12.0000
GUGG	chr19:2425971-2426224(-)$1	253	62	66	12.0000
GUGG	chr8:144992861-144993105(-)$1	244	190	194	12.0000
GUGG	chr22:21800298-21800568(+)$1	270	24	28	12.0000
GUGG	chr7:100731248-100731498(+)$1	250	11	15	12.0000
GUGG	chr1:144931060-144931336(-)$1	276	51	55	12.0000
GUGG	chr19:5587775-5588032(-)$1	257	43	47	12.0000
GUGG	chr1:16259627-16259854(+)$1	227	68	72	12.0000
GUGG	chr11:62299041-62299279(-)$1	238	79	83	12.0000
GUGG	chr8:144996917-144997168(-)$1	251	236	240	12.0000
GUGG	chr21:47663450-47663764(+)$1	314	79	83	12.0000
GUGG	chr3:9989393-9989691(+)$1	298	102	106	12.0000
GUGG	chr19:1467824-1468081(-)$1	257	200	204	12.0000
GUGG	chr11:62285783-62286018(-)$1	235	124	128	12.0000
GUGG	chr8:144941485-144941742(-)$1	257	171	175	12.0000
GUGG	chr11:62296569-62296817(-)$1	248	8	12	12.0000
GUGG	chr19:11215794-11216084(+)$1	290	74	78	12.0000
GUGG	chr19:14266791-14267054(+)$1	263	68	72	12.0000
GUGG	chr1:16259121-16259383(+)$1	262	136	140	12.0000
GUGG	chr1:39876822-39877070(+)$1	248	119	123	12.0000
GUGG	chr11:62294264-62294496(-)$1	232	18	22	12.0000
GUGG	chr16:89346968-89347210(-)$1	242	107	111	12.0000
GUGG	chr2:101624374-101624626(+)$1	252	15	19	12.0000

#otherMatches

#Struct PSSM
ccc!	chr8:144999257-144999520(-)$1	263	92	96	12.0000
::cc	chr11:62288115-62288367(-)$1	252	135	139	12.0000
oooe	chr7:150784074-150784305(+)$1	231	121	125	12.0000
GGNN	chr8:94752619-94752863(-)$1	244	41	45	12.0000
c[cc	chr11:61897227-61897497(+)$1	270	108	112	12.0000
gggg	chr2:236579456-236579716(+)$1	260	245	249	12.0000
::cc	chr7:99631053-99631312(+)$1	259	219	223	12.0000
IIII	chr11:62284507-62284753(-)$1	246	41	45	12.0000
:A{G	chr19:50099477-50099791(+)$1	314	0	4	12.0000
FFFe	chr11:62297859-62298103(-)$1	244	34	38	12.0000
rfff	chr11:62298612-62298873(-)$1	261	63	67	12.0000
hhhh	chr22:21800246-21800498(+)$1	252	76	80	12.0000
d[cc	chr8:94748475-94748693(-)$1	218	39	43	12.0000
bb[e	chr11:62293003-62293252(-)$1	249	103	107	12.0000
[bbn	chr5:71492057-71492300(+)$1	243	101	105	12.0000
eeee	chr1:16255531-16255795(+)$1	264	54	58	12.0000
dddd	chr9:138378082-138378341(+)$1	259	66	70	12.0000
KKCC	chr8:144946858-144947100(-)$1	242	102	106	12.0000
DDRR	chr11:62299841-62300082(-)$1	241	21	25	12.0000
oooe	chr6:30680698-30680991(-)$1	293	116	120	12.0000
eeee	chr11:62296813-62297044(-)$1	231	127	131	12.0000
c]dd	chr8:144994114-144994365(-)$1	251	103	107	12.0000
CC}F	chr9:134351211-134351462(+)$1	251	104	108	12.0000
hhh[	chr19:58991274-58991529(-)$1	255	45	49	12.0000
DDDD	chr1:1691148-1691392(-)$1	244	173	177	12.0000
GGGG	chr21:46918285-46918596(+)$1	311	186	190	12.0000
eeee	chr17:62893266-62893544(-)$1	278	91	95	12.0000
::::	chr16:30749540-30749794(+)$1	254	2	6	12.0000
rddd	chr7:100731644-100731898(+)$1	254	84	88	12.0000
EEEE	chr19:49841180-49841500(-)$1	320	72	76	12.0000
J:dd	chr19:58991519-58991818(-)$1	299	25	29	12.0000
iiii	chr22:21799521-21799780(+)$1	259	197	201	12.0000
]eee	chr9:138379766-138380020(+)$1	254	191	195	12.0000
3eee	chr1:144931136-144931405(-)$1	269	120	124	12.0000
eeem	chr22:26164904-26165229(+)$1	325	254	258	12.0000
GGGG	chr19:58772269-58772509(+)$1	240	21	25	12.0000
BB{B	chr5:139493785-139494059(+)$1	274	12	16	12.0000
iiii	chr9:140173194-140173433(+)$1	239	89	93	12.0000
eeee	chr11:62287894-62288150(-)$1	256	113	117	12.0000
:ggg	chrM:14151-14396(-)$1	245	1	5	12.0000
ooee	chr11:62286126-62286359(-)$1	233	113	117	12.0000
G:bb	chr19:58990973-58991244(-)$1	271	39	43	12.0000
C{HH	chr20:32255318-32255615(-)$1	297	9	13	12.0000
::::	chr11:62284255-62284484(-)$1	229	3	7	12.0000
eeee	chr22:23523116-23523381(+)$1	265	34	38	12.0000
::HH	chr2:3322504-3322743(-)$1	239	172	176	12.0000
mddd	chr11:62285137-62285373(-)$1	236	58	62	12.0000
b[bb	chr11:62291291-62291516(-)$1	225	14	18	12.0000
F{FF	chr7:1886855-1887140(-)$1	285	10	14	12.0000
GGGG	chr8:144671309-144671573(-)$1	264	17	21	12.0000
ee]f	chr11:62285474-62285698(-)$1	224	121	125	12.0000
dd[d	chr7:1132112-1132403(-)$1	291	118	122	12.0000
dd:H	chr14:102452439-102452736(+)$1	297	115	119	12.0000
>>>>	chr12:72057249-72057553(-)$1	304	142	146	12.0000
LLCC	chr16:87736015-87736269(-)$1	254	14	18	12.0000
bb[a	chr7:44046883-44047168(-)$1	285	37	41	12.0000
dddd	chr5:668582-668844(+)$1	262	6	10	12.0000
bmmm	chr11:71724678-71724924(-)$1	246	12	16	12.0000
qqcc	chr16:89788065-89788322(+)$1	257	95	99	12.0000
:eee	chr11:62290903-62291142(-)$1	239	3	7	12.0000
mccc	chr11:62297246-62297505(-)$1	259	111	115	12.0000
EEE:	chr11:62296654-62296913(-)$1	259	104	108	12.0000
cc""	chr8:144999339-144999603(-)$1	264	49	53	12.0000
eee[	chr8:94752665-94752898(-)$1	233	76	80	12.0000
ffff	chr19:2425971-2426224(-)$1	253	62	66	12.0000
eee]	chr8:144992861-144993105(-)$1	244	190	194	12.0000
hhhh	chr22:21800298-21800568(+)$1	270	24	28	12.0000
{A::	chr7:100731248-100731498(+)$1	250	11	15	12.0000
hhhh	chr1:144931060-144931336(-)$1	276	51	55	12.0000
ccce	chr19:5587775-5588032(-)$1	257	43	47	12.0000
(ccc	chr1:16259627-16259854(+)$1	227	68	72	12.0000
mccc	chr11:62299041-62299279(-)$1	238	79	83	12.0000
IIII	chr8:144996917-144997168(-)$1	251	236	240	12.0000
a]hh	chr21:47663450-47663764(+)$1	314	79	83	12.0000
2eee	chr3:9989393-9989691(+)$1	298	102	106	12.0000
oooo	chr19:1467824-1468081(-)$1	257	200	204	12.0000
====	chr11:62285783-62286018(-)$1	235	124	128	12.0000
cc!!	chr8:144941485-144941742(-)$1	257	171	175	12.0000
lccc	chr11:62296569-62296817(-)$1	248	8	12	12.0000
ccff	chr19:11215794-11216084(+)$1	290	74	78	12.0000
gggH	chr19:14266791-14267054(+)$1	263	68	72	12.0000
cccl	chr1:16259121-16259383(+)$1	262	136	140	12.0000
:ccc	chr1:39876822-39877070(+)$1	248	119	123	12.0000
FF{E	chr11:62294264-62294496(-)$1	232	18	22	12.0000
f]ff	chr16:89346968-89347210(-)$1	242	107	111	12.0000
E{CC	chr2:101624374-101624626(+)$1	252	15	19	12.0000

#DB
(((.	chr8:144999257-144999520(-)$1	1	92	96	12.0000
..((	chr11:62288115-62288367(-)$1	1	135	139	12.0000
...)	chr7:150784074-150784305(+)$1	1	121	125	12.0000
((..	chr8:94752619-94752863(-)$1	1	41	45	12.0000
(.((	chr11:61897227-61897497(+)$1	1	108	112	12.0000
))))	chr2:236579456-236579716(+)$1	1	245	249	12.0000
..((	chr7:99631053-99631312(+)$1	1	219	223	12.0000
((((	chr11:62284507-62284753(-)$1	1	41	45	12.0000
.(.(	chr19:50099477-50099791(+)$1	1	0	4	12.0000
((((	chr11:62297859-62298103(-)$1	1	34	38	12.0000
.)))	chr11:62298612-62298873(-)$1	1	63	67	12.0000
((((	chr22:21800246-21800498(+)$1	1	76	80	12.0000
(.((	chr8:94748475-94748693(-)$1	1	39	43	12.0000
((.(	chr11:62293003-62293252(-)$1	1	103	107	12.0000
.((.	chr5:71492057-71492300(+)$1	1	101	105	12.0000
))))	chr1:16255531-16255795(+)$1	1	54	58	12.0000
((((	chr9:138378082-138378341(+)$1	1	66	70	12.0000
..((	chr8:144946858-144947100(-)$1	1	102	106	12.0000
((..	chr11:62299841-62300082(-)$1	1	21	25	12.0000
...)	chr6:30680698-30680991(-)$1	1	116	120	12.0000
))))	chr11:62296813-62297044(-)$1	1	127	131	12.0000
).))	chr8:144994114-144994365(-)$1	1	103	107	12.0000
)).)	chr9:134351211-134351462(+)$1	1	104	108	12.0000
(((.	chr19:58991274-58991529(-)$1	1	45	49	12.0000
))))	chr1:1691148-1691392(-)$1	1	173	177	12.0000
))))	chr21:46918285-46918596(+)$1	1	186	190	12.0000
((((	chr17:62893266-62893544(-)$1	1	91	95	12.0000
....	chr16:30749540-30749794(+)$1	1	2	6	12.0000
.)))	chr7:100731644-100731898(+)$1	1	84	88	12.0000
((((	chr19:49841180-49841500(-)$1	1	72	76	12.0000
(.((	chr19:58991519-58991818(-)$1	1	25	29	12.0000
))))	chr22:21799521-21799780(+)$1	1	197	201	12.0000
.)))	chr9:138379766-138380020(+)$1	1	191	195	12.0000
.)))	chr1:144931136-144931405(-)$1	1	120	124	12.0000
(((.	chr22:26164904-26165229(+)$1	1	254	258	12.0000
((((	chr19:58772269-58772509(+)$1	1	21	25	12.0000
((.(	chr5:139493785-139494059(+)$1	1	12	16	12.0000
))))	chr9:140173194-140173433(+)$1	1	89	93	12.0000
))))	chr11:62287894-62288150(-)$1	1	113	117	12.0000
.(((	chrM:14151-14396(-)$1	1	1	5	12.0000
..))	chr11:62286126-62286359(-)$1	1	113	117	12.0000
(.((	chr19:58990973-58991244(-)$1	1	39	43	12.0000
(.((	chr20:32255318-32255615(-)$1	1	9	13	12.0000
....	chr11:62284255-62284484(-)$1	1	3	7	12.0000
((((	chr22:23523116-23523381(+)$1	1	34	38	12.0000
..))	chr2:3322504-3322743(-)$1	1	172	176	12.0000
.)))	chr11:62285137-62285373(-)$1	1	58	62	12.0000
(.((	chr11:62291291-62291516(-)$1	1	14	18	12.0000
(.((	chr7:1886855-1887140(-)$1	1	10	14	12.0000
((((	chr8:144671309-144671573(-)$1	1	17	21	12.0000
)).)	chr11:62285474-62285698(-)$1	1	121	125	12.0000
((.(	chr7:1132112-1132403(-)$1	1	118	122	12.0000
)).(	chr14:102452439-102452736(+)$1	1	115	119	12.0000
....	chr12:72057249-72057553(-)$1	1	142	146	12.0000
..((	chr16:87736015-87736269(-)$1	1	14	18	12.0000
((.(	chr7:44046883-44047168(-)$1	1	37	41	12.0000
((((	chr5:668582-668844(+)$1	1	6	10	12.0000
(...	chr11:71724678-71724924(-)$1	1	12	16	12.0000
..))	chr16:89788065-89788322(+)$1	1	95	99	12.0000
.(((	chr11:62290903-62291142(-)$1	1	3	7	12.0000
.)))	chr11:62297246-62297505(-)$1	1	111	115	12.0000
))).	chr11:62296654-62296913(-)$1	1	104	108	12.0000
((..	chr8:144999339-144999603(-)$1	1	49	53	12.0000
(((.	chr8:94752665-94752898(-)$1	1	76	80	12.0000
))))	chr19:2425971-2426224(-)$1	1	62	66	12.0000
))).	chr8:144992861-144993105(-)$1	1	190	194	12.0000
((((	chr22:21800298-21800568(+)$1	1	24	28	12.0000
.(..	chr7:100731248-100731498(+)$1	1	11	15	12.0000
))))	chr1:144931060-144931336(-)$1	1	51	55	12.0000
))))	chr19:5587775-5588032(-)$1	1	43	47	12.0000
.(((	chr1:16259627-16259854(+)$1	1	68	72	12.0000
.)))	chr11:62299041-62299279(-)$1	1	79	83	12.0000
))))	chr8:144996917-144997168(-)$1	1	236	240	12.0000
).))	chr21:47663450-47663764(+)$1	1	79	83	12.0000
.)))	chr3:9989393-9989691(+)$1	1	102	106	12.0000
....	chr19:1467824-1468081(-)$1	1	200	204	12.0000
((((	chr11:62285783-62286018(-)$1	1	124	128	12.0000
((..	chr8:144941485-144941742(-)$1	1	171	175	12.0000
.)))	chr11:62296569-62296817(-)$1	1	8	12	12.0000
))))	chr19:11215794-11216084(+)$1	1	74	78	12.0000
)))(	chr19:14266791-14267054(+)$1	1	68	72	12.0000
(((.	chr1:16259121-16259383(+)$1	1	136	140	12.0000
.(((	chr1:39876822-39877070(+)$1	1	119	123	12.0000
((.(	chr11:62294264-62294496(-)$1	1	18	22	12.0000
).))	chr16:89346968-89347210(-)$1	1	107	111	12.0000
(.((	chr2:101624374-101624626(+)$1	1	15	19	12.0000

#PSSM
G : 0.98	g : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_UTR_m1_run1.nuc.txt

#NT
gggcggcggcggggg	chr1:2160042-2160342(+)$1	300	93	108	32.9000
GGGCGGAGGCGGGGC	chr7:5569348-5569585(-)$1	237	51	66	27.2000
GGGUGCCGGCGGGGC	chr9:80646051-80646340(-)$1	289	151	166	22.7000
gggcggcggcgccgg	chr19:42788122-42788377(+)$1	255	224	239	26.6000
GGGCGGCGGGCCGGG	chr15:93426377-93426626(+)$1	249	120	135	23.1000
gggcgguggcggccg	chr12:122238433-122238704(-)$1	271	113	128	23.0000
gggaggaggcggggg	chr1:27022731-27023035(+)$1	304	257	272	28.1000
GGGCGGAGGCGGCGG	chr16:2802728-2803017(+)$1	289	104	119	27.8000
GGUGAGCGGCGGGGG	chr7:6523402-6523700(-)$1	298	102	117	21.4000
GGGAGGGGGCCGGGG	chr5:32585889-32586189(+)$1	300	271	286	25.4000
GGGCGGAGGCGGGGC	chr7:5569490-5569708(-)$1	218	174	189	27.2000
GGGCGGCGGGGCCGG	chr15:80215333-80215694(-)$1	361	70	85	23.5000
GGGGAGCGGCGGGGG	chr5:179248034-179248279(+)$1	245	118	133	25.7000
uggcggcggcggcgg	chr21:46494365-46494622(+)$1	257	147	162	26.4000
GGGCGGCUGGGGGGU	chr16:28875229-28875525(+)$1	296	218	233	21.7000
AGGCGGCGGCGGCGG	chr14:32546357-32546621(+)$1	264	184	199	26.2000
GGGCGGUGGCGACGG	chr22:42229081-42229399(+)$1	318	118	133	23.4000
GGGCGGAGGCGGGGC	chr7:5569457-5569690(-)$1	233	156	171	27.2000
ggcgggcggcggggg	chr7:77166712-77166972(+)$1	260	103	118	25.9000
gggcgcgggcggggg	chr4:38666228-38666555(+)$1	327	166	181	26.5000
GGGCGGUGGAGGGGG	chr9:139743353-139743634(+)$1	281	17	32	26.8000
gggcggggccggggg	chr9:139560088-139560350(+)$1	262	84	99	26.3000
GGGUGGCGGCCGGCG	chr17:62501973-62502252(-)$1	279	117	132	22.5000
GGGCGGUGGCGGGGG	chr17:25783606-25783887(+)$1	281	110	125	30.2000
GGGUGGGGGCGGGGA	chr13:45914966-45915211(-)$1	245	86	101	24.2000
GGGAGGCGGGAGGGG	chr19:46285638-46285894(-)$1	256	69	84	24.0000
UGGCGGCGGCUGGGC	chr10:65225458-65225722(-)$1	264	4	19	22.1000
GGUCGGCGGCGGGGA	chr15:89877733-89878054(-)$1	321	162	177	24.9000
UGGAGCCGGCGGGGG	chr1:228270379-228270709(+)$1	330	129	144	22.5000
GGGAGGCGGCGGCGG	chr8:103424513-103424793(-)$1	280	178	193	28.0000
GGAGGGCGGCAGGGG	chr19:49122186-49122442(-)$1	256	119	134	22.3000
AGGAGGCCGCGGGGG	chr7:150777753-150777965(-)$1	212	115	130	22.0000
gggagggggcggggg	chr19:6424208-6424454(-)$1	246	41	56	28.4000
GAGCGGCGGGAGGGG	chr19:16187665-16188004(+)$1	339	143	158	21.6000
ggccggcggcggcgg	chr16:3930019-3930293(-)$1	274	131	146	26.0000
GGGCGGCGGGCCGGG	chr15:93426459-93426704(+)$1	245	38	53	23.1000
GGGGGGCGGCCCGGG	chr17:73775260-73775518(-)$1	258	200	215	23.5000
gggcggcgcccgggg	chr2:97535518-97535839(-)$1	321	192	207	25.5000
GGGCGGGGGCGCGGG	chr2:114648057-114648346(+)$1	289	37	52	27.0000
GGGCGGCUGGGGGGU	chr16:28875325-28875618(+)$1	293	122	137	21.7000
gggcgccggccgggg	chr3:176914160-176914414(-)$1	254	126	141	25.7000
GGGAGGCGGUGGCGG	chr3:184032771-184033054(+)$1	283	119	134	24.3000
GGGCGGGGGAGGGGG	chr19:3464838-3465094(+)$1	256	33	48	27.3000
gggcgggaccggggg	chr4:2936009-2936277(-)$1	268	54	69	21.8000
UGGUGGCGGAGGGGG	chr20:57467329-57467610(+)$1	281	129	144	22.8000
GGGAGGGGGAGGGGG	chr1:59247156-59247422(-)$1	266	19	34	25.0000
gcgccgcggcggggc	chr19:15442476-15442799(-)$1	323	8	23	20.4000
GGGCGGAGGCCGGGC	chr10:6130988-6131356(+)$1	368	277	292	24.2000
gggcggcggcggcgg	chr19:39833113-39833384(+)$1	271	217	232	30.3000

#otherMatches

#Struct PSSM
fff]ccc]bb]cccc	chr19:39833017-39833291(+)$1	274	65	80	26.1000
CCC{FFFFFFKKFFF	chr1:2160042-2160342(+)$1	300	93	108	32.9000
iiiii!!ccclllcc	chr7:5569348-5569585(-)$1	237	51	66	27.2000
}BB}DDDDJJJJJJJ	chr9:80646051-80646340(-)$1	289	151	166	22.7000
ZZEEEEE~~~~CCCB	chr19:42788122-42788377(+)$1	255	224	239	26.6000
ggdddd[iiiiiiii	chr15:93426377-93426626(+)$1	249	120	135	23.1000
====ddddddddlll	chr12:122238433-122238704(-)$1	271	113	128	23.0000
dd22bb]ffffff22	chr1:27022731-27023035(+)$1	304	257	272	28.1000
CCC{EEEEE{BB{DD	chr16:2802728-2803017(+)$1	289	104	119	27.8000
ennnnneeeee]ddd	chr7:6523402-6523700(-)$1	298	102	117	21.4000
e333eeeee]=====	chr5:32585889-32586189(+)$1	300	271	286	25.4000
iiiii!!ccclllcc	chr7:5569490-5569708(-)$1	218	174	189	27.2000
qqccc22ffffff]b	chr15:80215333-80215694(-)$1	361	70	85	23.5000
JJJJJJJJJJIIIII	chr5:179248034-179248279(+)$1	245	118	133	25.7000
eeIIIIIIIII{EEE	chr21:46494365-46494622(+)$1	257	147	162	26.4000
fffff[bblllbb]f	chr16:28875229-28875525(+)$1	296	218	233	21.7000
}CCCYYA}EEEEE}B	chr14:32546357-32546621(+)$1	264	184	199	26.2000
DDDDdddd[allla]	chr22:42229081-42229399(+)$1	318	118	133	23.4000
iiiii!!ccclllcc	chr7:5569457-5569690(-)$1	233	156	171	27.2000
!!a[ccc[dddd!!a	chr7:77166712-77166972(+)$1	260	103	118	25.9000
44ffffff:gggggg	chr4:38666228-38666555(+)$1	327	166	181	26.5000
{EEEEE{BBMMMMEE	chr9:139743353-139743634(+)$1	281	17	32	26.8000
gggggggccc22ddd	chr9:139560088-139560350(+)$1	262	84	99	26.3000
=======!!dddd[g	chr17:62501973-62502252(-)$1	279	117	132	22.5000
EEAEEEEEBBLLLDD	chr17:25783606-25783887(+)$1	281	110	125	30.2000
dd[bb!!a[aooooo	chr13:45914966-45915211(-)$1	245	86	101	24.2000
GGG{CCCMMMMDDDD	chr19:46285638-46285894(-)$1	256	69	84	24.0000
HHHHfffffflllff	chr10:65225458-65225722(-)$1	264	4	19	22.1000
EEEE}FFFFFF}BB}	chr15:89877733-89878054(-)$1	321	162	177	24.9000
FFF:::::ggggggg	chr1:228270379-228270709(+)$1	330	129	144	22.5000
cc::JJJJJJJJJJ?	chr8:103424513-103424793(-)$1	280	178	193	28.0000
ddd]ffffff]ccc]	chr19:49122186-49122442(-)$1	256	119	134	22.3000
nbb]ffffff]ccc:	chr7:150777753-150777965(-)$1	212	115	130	22.0000
####ammmma55555	chr19:6424208-6424454(-)$1	246	41	56	28.4000
ffff[ccc[bbrrrr	chr19:16187665-16188004(+)$1	339	143	158	21.6000
ffffff[bb[bb[==	chr16:3930019-3930293(-)$1	274	131	146	26.0000
hhhhhhhhccclllc	chr15:93426459-93426704(+)$1	245	38	53	23.1000
fffeeeee[ddddff	chr17:73775260-73775518(-)$1	258	200	215	23.5000
GKKDDDDbbddddll	chr2:97535518-97535839(-)$1	321	192	207	25.5000
=========:::GGG	chr2:114648057-114648346(+)$1	289	37	52	27.0000
dddd]bbiiiiiiii	chr16:28875325-28875618(+)$1	293	122	137	21.7000
iiiiii22ccc]iii	chr3:176914160-176914414(-)$1	254	126	141	25.7000
HHH}FFFFFFHHHHH	chr3:184032771-184033054(+)$1	283	119	134	24.3000
hh]a:CCCffffff[	chr19:3464838-3465094(+)$1	256	33	48	27.3000
333ccc22ccc333f	chr4:2936009-2936277(-)$1	268	54	69	21.8000
nnnndddd:::::::	chr20:57467329-57467610(+)$1	281	129	144	22.8000
f####a[eeeee[dd	chr1:59247156-59247422(-)$1	266	19	34	25.0000
cc[ccclllccc]cc	chr19:15442476-15442799(-)$1	323	8	23	20.4000
EEEEffffffa[ccc	chr10:6130988-6131356(+)$1	368	277	292	24.2000
ddd333a]a]bb]gg	chr19:39833113-39833384(+)$1	271	217	232	30.3000

#DB
))).))).)).)))(	chr19:39833017-39833291(+)$1	1	65	80	26.1000
(((.((((((..(((	chr1:2160042-2160342(+)$1	1	93	108	32.9000
(((((..(((...))	chr7:5569348-5569585(-)$1	1	51	66	27.2000
.)).))))(((((((	chr9:80646051-80646340(-)$1	1	151	166	22.7000
..)))))....))))	chr19:42788122-42788377(+)$1	1	224	239	26.6000
((((((.((((((((	chr15:93426377-93426626(+)$1	1	120	135	23.1000
))))((((((((...	chr12:122238433-122238704(-)$1	1	113	128	23.0000
))..)).))))))..	chr1:27022731-27023035(+)$1	1	257	272	28.1000
(((.(((((.((.((	chr16:2802728-2803017(+)$1	1	104	119	27.8000
(.....))))).)))	chr7:6523402-6523700(-)$1	1	102	117	21.4000
)...))))).)))))	chr5:32585889-32586189(+)$1	1	271	286	25.4000
(((((..(((...))	chr7:5569490-5569708(-)$1	1	174	189	27.2000
..)))..)))))).)	chr15:80215333-80215694(-)$1	1	70	85	23.5000
(((((((((((((((	chr5:179248034-179248279(+)$1	1	118	133	25.7000
))(((((((((.(((	chr21:46494365-46494622(+)$1	1	147	162	26.4000
(((((.((...)).)	chr16:28875229-28875525(+)$1	1	218	233	21.7000
.)))..).))))).)	chr14:32546357-32546621(+)$1	1	184	199	26.2000
((((((((.(...).	chr22:42229081-42229399(+)$1	1	118	133	23.4000
(((((..(((...))	chr7:5569457-5569690(-)$1	1	156	171	27.2000
..(.(((.((((..(	chr7:77166712-77166972(+)$1	1	103	118	25.9000
..)))))).((((((	chr4:38666228-38666555(+)$1	1	166	181	26.5000
.(((((.((....((	chr9:139743353-139743634(+)$1	1	17	32	26.8000
))))))))))..)))	chr9:139560088-139560350(+)$1	1	84	99	26.3000
(((((((..((((.(	chr17:62501973-62502252(-)$1	1	117	132	22.5000
((((((((((...((	chr17:25783606-25783887(+)$1	1	110	125	30.2000
((.((..(.(.....	chr13:45914966-45915211(-)$1	1	86	101	24.2000
(((.(((....((((	chr19:46285638-46285894(-)$1	1	69	84	24.0000
((((((((((...))	chr10:65225458-65225722(-)$1	1	4	19	22.1000
)))).)))))).)).	chr15:89877733-89878054(-)$1	1	162	177	24.9000
))).....(((((((	chr1:228270379-228270709(+)$1	1	129	144	22.5000
))..)))))))))).	chr8:103424513-103424793(-)$1	1	178	193	28.0000
))).)))))).))).	chr19:49122186-49122442(-)$1	1	119	134	22.3000
.)).)))))).))).	chr7:150777753-150777965(-)$1	1	115	130	22.0000
....(....).....	chr19:6424208-6424454(-)$1	1	41	56	28.4000
((((.(((.((....	chr19:16187665-16188004(+)$1	1	143	158	21.6000
((((((.((.((.((	chr16:3930019-3930293(-)$1	1	131	146	26.0000
(((((((((((...)	chr15:93426459-93426704(+)$1	1	38	53	23.1000
((((((((.((((((	chr17:73775260-73775518(-)$1	1	200	215	23.5000
(..((((((((((..	chr2:97535518-97535839(-)$1	1	192	207	25.5000
)))))))))...(((	chr2:114648057-114648346(+)$1	1	37	52	27.0000
)))).))((((((((	chr16:28875325-28875618(+)$1	1	122	137	21.7000
))))))..))).)))	chr3:176914160-176914414(-)$1	1	126	141	25.7000
))).))))))(((((	chr3:184032771-184033054(+)$1	1	119	134	24.3000
)).).(((((((((.	chr19:3464838-3465094(+)$1	1	33	48	27.3000
...)))..)))...)	chr4:2936009-2936277(-)$1	1	54	69	21.8000
....)))).......	chr20:57467329-57467610(+)$1	1	129	144	22.8000
(....(.(((((.((	chr1:59247156-59247422(-)$1	1	19	34	25.0000
((.(((...))).))	chr19:15442476-15442799(-)$1	1	8	23	20.4000
(((((((((((.(((	chr10:6130988-6131356(+)$1	1	277	292	24.2000
)))...).).)).))	chr19:39833113-39833384(+)$1	1	217	232	30.3000

#PSSM
G : 0.58	g : 0.27	U : 0.06	A : 0.04	c : 0.02	u : 0.02	
G : 0.66	g : 0.30	A : 0.02	c : 0.02	
G : 0.62	g : 0.27	U : 0.04	c : 0.04	A : 0.02	
C : 0.38	c : 0.25	A : 0.14	U : 0.08	G : 0.08	a : 0.04	g : 0.02	
G : 0.64	g : 0.30	A : 0.04	c : 0.02	
G : 0.64	g : 0.27	C : 0.04	c : 0.04	
C : 0.42	c : 0.19	A : 0.10	G : 0.10	g : 0.08	U : 0.06	u : 0.02	a : 0.02	
G : 0.62	g : 0.30	U : 0.04	C : 0.02	a : 0.02	
G : 0.68	g : 0.25	c : 0.06	
C : 0.44	c : 0.32	G : 0.14	A : 0.08	U : 0.02	
G : 0.48	g : 0.27	C : 0.12	A : 0.06	c : 0.04	U : 0.02	
G : 0.56	g : 0.30	C : 0.10	c : 0.02	A : 0.02	
G : 0.56	g : 0.19	c : 0.12	C : 0.12	
G : 0.66	g : 0.30	c : 0.02	C : 0.02	
G : 0.48	g : 0.30	C : 0.12	U : 0.04	A : 0.04	c : 0.02	

#score	1252.4000000000008
#seq	50
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_CDS_m2_run1.nuc.txt

#NT
CCUGGC	chr2:75116231-75116505(+)$1	274	146	152	15.8409
CCUGGC	chr16:2160518-2160784(-)$1	266	229	235	15.8409
CCUGCC	chr19:42795157-42795425(+)$1	268	31	37	13.7954
CCUGGU	chr15:91456514-91456810(+)$1	296	19	25	12.2045
CCUGGU	chr11:61058257-61058509(-)$1	252	43	49	12.2045
CCUGGC	chrX:152958342-152958603(+)$1	261	140	146	15.8409
CCUGCC	chr17:27074878-27075168(+)$1	290	20	26	13.7954
CCUGGC	chr7:100771534-100771856(+)$1	322	178	184	15.8409
CCUGGC	chr17:27420262-27420516(-)$1	254	201	207	15.8409
CCUGGC	chr1:148009344-148009621(-)$1	277	70	76	15.8409
CCUGGC	chr17:74084082-74084345(-)$1	263	11	17	15.8409
CCUGGC	chr19:18672673-18672989(+)$1	316	107	113	15.8409
CCUGGU	chr2:86358100-86358353(+)$1	253	195	201	12.2045
CCUGCC	chr3:184020639-184020908(+)$1	269	17	23	13.7954
CCUGGC	chr19:2233767-2234033(-)$1	266	98	104	15.8409
CCUGCC	chr1:228290088-228290416(-)$1	328	6	12	13.7954
CCUGGC	chr19:1979016-1979296(+)$1	280	214	220	15.8409
CCUGGC	chr20:43034550-43034831(+)$1	281	137	143	15.8409
CCUggc	chr4:10022799-10023125(-)$1	326	309	315	15.8409
CCUGGU	chr19:15383759-15384048(-)$1	289	108	114	12.2045
CCUGGC	chr2:97530922-97531211(-)$1	289	251	257	15.8409
CCUGCC	chr17:55189727-55189952(+)$1	225	102	108	13.7954
CCUGGU	chr17:35687022-35687261(-)$1	239	26	32	12.2045
CCUGCC	chr3:184105616-184105847(+)$1	231	66	72	13.7954
CCUGGC	chr2:11728721-11728982(+)$1	261	37	43	15.8409
CCUGGC	chr20:62320268-62320513(+)$1	245	29	35	15.8409
CCUGGC	chr11:46569264-46569508(-)$1	244	201	207	15.8409
CCUGCC	chr9:117014778-117015024(+)$1	246	27	33	13.7954
CCUGGC	chr9:95992022-95992251(+)$1	229	160	166	15.8409
CCUGCC	chr11:61058636-61058885(-)$1	249	114	120	13.7954
CCUGGC	chr1:21952749-21952999(-)$1	250	65	71	15.8409
CCUGCC	chr2:27726372-27726625(+)$1	253	102	108	13.7954
CCUGCC	chr2:73492623-73492958(-)$1	335	22	28	13.7954
CCUGCC	chr16:57507257-57507565(-)$1	308	68	74	13.7954
CCUGGC	chr17:76121125-76121377(-)$1	252	67	73	15.8409
CCUGGC	chrX:70469741-70469998(-)$1	257	156	162	15.8409
CCUGGC	chr9:95993070-95993358(+)$1	288	276	282	15.8409
CCUGGC	chr20:25469806-25470061(-)$1	255	124	130	15.8409
CCUGGU	chr3:52523945-52524213(+)$1	268	88	94	12.2045
CCUGCC	chr20:61540902-61541167(-)$1	265	241	247	13.7954
CCUGGC	chr2:97530459-97530735(-)$1	276	251	257	15.8409
CCUGGC	chr2:153572470-153572750(-)$1	280	119	125	15.8409
CCUGCC	chr3:44496479-44496785(-)$1	306	61	67	13.7954

#otherMatches

#Struct PSSM
BBB}DD	chr19:2210295-2210553(+)$1	258	226	232	15.8409
eeeea]	chr2:75116231-75116505(+)$1	274	146	152	15.8409
dd]ccc	chr16:2160518-2160784(-)$1	266	229	235	15.8409
hhhhhh	chr19:42795157-42795425(+)$1	268	31	37	13.7954
HH::ee	chr15:91456514-91456810(+)$1	296	19	25	12.2045
eeeee4	chr11:61058257-61058509(-)$1	252	43	49	12.2045
f[eeee	chrX:152958342-152958603(+)$1	261	140	146	15.8409
mmmmdd	chr17:27074878-27075168(+)$1	290	20	26	13.7954
b]ccc9	chr7:100771534-100771856(+)$1	322	178	184	15.8409
fffffI	chr17:27420262-27420516(-)$1	254	201	207	15.8409
fcccdd	chr1:148009344-148009621(-)$1	277	70	76	15.8409
FFFFFF	chr17:74084082-74084345(-)$1	263	11	17	15.8409
ccbbbb	chr19:18672673-18672989(+)$1	316	107	113	15.8409
ddd:::	chr2:86358100-86358353(+)$1	253	195	201	12.2045
:dddd[	chr3:184020639-184020908(+)$1	269	17	23	13.7954
======	chr19:2233767-2234033(-)$1	266	98	104	15.8409
CLLLJJ	chr1:228290088-228290416(-)$1	328	6	12	13.7954
dddlll	chr19:1979016-1979296(+)$1	280	214	220	15.8409
FFF}BB	chr20:43034550-43034831(+)$1	281	137	143	15.8409
eeee]a	chr4:10022799-10023125(-)$1	326	309	315	15.8409
d[ffff	chr19:15383759-15384048(-)$1	289	108	114	12.2045
YYHHHH	chr2:97530922-97531211(-)$1	289	251	257	15.8409
cccc::	chr17:55189727-55189952(+)$1	225	102	108	13.7954
:::eee	chr17:35687022-35687261(-)$1	239	26	32	12.2045
ffffff	chr3:184105616-184105847(+)$1	231	66	72	13.7954
"""bb[	chr2:11728721-11728982(+)$1	261	37	43	15.8409
MMMCCC	chr20:62320268-62320513(+)$1	245	29	35	15.8409
[hhhhh	chr11:46569264-46569508(-)$1	244	201	207	15.8409
vvvvvv	chr9:117014778-117015024(+)$1	246	27	33	13.7954
CCCEEE	chr9:95992022-95992251(+)$1	229	160	166	15.8409
e"""cc	chr11:61058636-61058885(-)$1	249	114	120	13.7954
ssssss	chr1:21952749-21952999(-)$1	250	65	71	15.8409
ffffmm	chr2:27726372-27726625(+)$1	253	102	108	13.7954
======	chr2:73492623-73492958(-)$1	335	22	28	13.7954
DDDDAK	chr16:57507257-57507565(-)$1	308	68	74	13.7954
ldddd]	chr17:76121125-76121377(-)$1	252	67	73	15.8409
fffff"	chrX:70469741-70469998(-)$1	257	156	162	15.8409
JJJJJ:	chr9:95993070-95993358(+)$1	288	276	282	15.8409
f[bb[b	chr20:25469806-25470061(-)$1	255	124	130	15.8409
fff:::	chr3:52523945-52524213(+)$1	268	88	94	12.2045
GGGG:g	chr20:61540902-61541167(-)$1	265	241	247	13.7954
BBYYDD	chr2:97530459-97530735(-)$1	276	251	257	15.8409
""bbnn	chr2:153572470-153572750(-)$1	280	119	125	15.8409
ff[ggg	chr3:44496479-44496785(-)$1	306	61	67	13.7954

#DB
))).))	chr19:2210295-2210553(+)$1	1	226	232	15.8409
))))).	chr2:75116231-75116505(+)$1	1	146	152	15.8409
)).)))	chr16:2160518-2160784(-)$1	1	229	235	15.8409
((((((	chr19:42795157-42795425(+)$1	1	31	37	13.7954
((..((	chr15:91456514-91456810(+)$1	1	19	25	12.2045
))))).	chr11:61058257-61058509(-)$1	1	43	49	12.2045
(.((((	chrX:152958342-152958603(+)$1	1	140	146	15.8409
....))	chr17:27074878-27075168(+)$1	1	20	26	13.7954
).))).	chr7:100771534-100771856(+)$1	1	178	184	15.8409
))))))	chr17:27420262-27420516(-)$1	1	201	207	15.8409
((((((	chr1:148009344-148009621(-)$1	1	70	76	15.8409
((((((	chr17:74084082-74084345(-)$1	1	11	17	15.8409
))))))	chr19:18672673-18672989(+)$1	1	107	113	15.8409
)))...	chr2:86358100-86358353(+)$1	1	195	201	12.2045
.((((.	chr3:184020639-184020908(+)$1	1	17	23	13.7954
))))))	chr19:2233767-2234033(-)$1	1	98	104	15.8409
(...((	chr1:228290088-228290416(-)$1	1	6	12	13.7954
(((...	chr19:1979016-1979296(+)$1	1	214	220	15.8409
))).))	chr20:43034550-43034831(+)$1	1	137	143	15.8409
)))).)	chr4:10022799-10023125(-)$1	1	309	315	15.8409
(.((((	chr19:15383759-15384048(-)$1	1	108	114	12.2045
..))))	chr2:97530922-97531211(-)$1	1	251	257	15.8409
))))..	chr17:55189727-55189952(+)$1	1	102	108	13.7954
...(((	chr17:35687022-35687261(-)$1	1	26	32	12.2045
))))))	chr3:184105616-184105847(+)$1	1	66	72	13.7954
...((.	chr2:11728721-11728982(+)$1	1	37	43	15.8409
...(((	chr20:62320268-62320513(+)$1	1	29	35	15.8409
.(((((	chr11:46569264-46569508(-)$1	1	201	207	15.8409
......	chr9:117014778-117015024(+)$1	1	27	33	13.7954
))))))	chr9:95992022-95992251(+)$1	1	160	166	15.8409
(...((	chr11:61058636-61058885(-)$1	1	114	120	13.7954
......	chr1:21952749-21952999(-)$1	1	65	71	15.8409
((((..	chr2:27726372-27726625(+)$1	1	102	108	13.7954
((((((	chr2:73492623-73492958(-)$1	1	22	28	13.7954
(((((.	chr16:57507257-57507565(-)$1	1	68	74	13.7954
.)))).	chr17:76121125-76121377(-)$1	1	67	73	15.8409
(((((.	chrX:70469741-70469998(-)$1	1	156	162	15.8409
))))).	chr9:95993070-95993358(+)$1	1	276	282	15.8409
(.((.(	chr20:25469806-25470061(-)$1	1	124	130	15.8409
)))...	chr3:52523945-52524213(+)$1	1	88	94	12.2045
)))).(	chr20:61540902-61541167(-)$1	1	241	247	13.7954
))..))	chr2:97530459-97530735(-)$1	1	251	257	15.8409
..((..	chr2:153572470-153572750(-)$1	1	119	125	15.8409
((.(((	chr3:44496479-44496785(-)$1	1	61	67	13.7954

#PSSM
C : 0.99	
C : 0.99	
U : 0.99	
G : 0.97	g : 0.02	
G : 0.68	C : 0.29	g : 0.02	
C : 0.84	U : 0.13	c : 0.02	

#score	648.590909090909
#seq	44
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_UTR_m3_run2.nuc.txt

#NT
GGGAGGUGGGC	chr11:2159442-2159661(-)$1	219	171	182	12.1666
gggcuggggcc	chr19:1585350-1585619(-)$1	269	239	250	18.4629
GAGCGGGGGAA	chr10:111987333-111987590(+)$1	257	43	54	13.4629
GGGCUGGGGGU	chr16:2579760-2580002(+)$1	242	218	229	17.7222
GGGCGGGGGCG	chr1:155243034-155243283(-)$1	249	65	76	20.3148
gggcggggacg	chr3:128840726-128841018(-)$1	292	241	252	16.2407
ggguggggGCU	chr6:32796313-32796571(-)$1	258	110	121	15.7777
CGGCUGGGGAG	chr3:49571748-49571972(+)$1	224	94	105	14.0185
gggcgggcgcg	chr16:75284635-75284913(-)$1	278	120	131	15.9629
GGGCUUGGGGC	chr6:7910208-7910477(-)$1	269	20	31	14.0185
UGGCAGGGGCA	chr7:1577272-1577613(+)$1	341	15	26	12.9999
gggcgggggug	chr7:27153317-27153564(-)$1	247	40	51	19.5740
GGGCGGAGGGU	chr3:10982076-10982341(+)$1	265	43	54	14.7592
GGGCAGGGCUG	chr2:241568619-241568929(+)$1	310	24	35	14.2037
GGGCGGUGGAG	chr9:139743343-139743634(+)$1	291	27	38	15.5925
GGGCAGGGGGU	chr9:136229283-136229525(-)$1	242	17	28	17.7222
gggagggggag	chr13:50571030-50571280(+)$1	250	6	17	16.2407
GGGUGGGGGCG	chr12:109124488-109124827(-)$1	339	100	111	17.3518
gggcgggcgcc	chr16:4588168-4588431(-)$1	263	221	232	15.2222
GGGCGGAGGGC	chr17:42295711-42295981(-)$1	270	37	48	15.5925
GGACGGGGGCG	chr3:52444128-52444410(+)$1	282	17	28	15.5925
GGGAAGGGGGC	chr16:57418088-57418323(+)$1	235	184	195	15.1296
GGGCGGGGGAG	chr17:79825594-79825823(+)$1	229	94	105	19.6666
GGGGUGGGGAC	chr8:41787592-41787866(-)$1	274	80	91	14.3888
GGGGAGGGGUU	chr22:36662404-36662684(+)$1	280	127	138	13.4629
GGGCAGUGGGU	chr3:32937277-32937542(+)$1	265	109	120	13.6481
GGGUAGGGGUG	chr1:19544628-19544928(-)$1	300	119	130	15.4999
GGGUUGGGGGA	chr11:62392263-62392525(-)$1	262	103	114	14.7592
CGGCUGGGGAG	chr3:49571731-49571948(+)$1	217	111	122	14.0185
gggugggggug	chr19:47504920-47505188(+)$1	268	66	77	16.6111
gggcggcgggc	chr3:52567594-52567848(-)$1	254	29	40	15.4074
GGCCGGGGGGC	chr11:208941-209281(+)$1	340	13	24	14.9444
GGGCUAGGGGC	chr2:75119794-75120055(+)$1	261	135	146	13.9259
GGGCUGGGAGG	chr1:44170849-44171111(+)$1	262	34	45	15.2222
GUGCGGGGGCC	chr12:57504871-57505139(-)$1	268	251	262	14.9444
GGGUAGGGGCU	chr17:47127529-47127794(+)$1	265	120	131	14.6666
GGGGAGGGGCA	chr1:29652794-29653057(+)$1	263	245	256	14.2037
GGGCAGGGGAA	chr9:136627648-136627897(-)$1	249	172	183	16.9814
GGGCUUGGGAG	chr15:65620179-65620437(-)$1	258	197	208	14.0185
GGGCGGGGGAA	chr19:35491152-35491400(+)$1	248	17	28	18.0925
GCGCAGGGGCC	chr11:2154306-2154511(-)$1	205	129	140	13.8333
gggcuggggca	chr19:10222219-10222520(+)$1	301	87	98	17.6296
GGGUGGGGGUC	chr5:180236976-180237256(-)$1	280	263	274	15.8703
gggcgggggcg	chr3:195622668-195622955(-)$1	287	107	118	20.3148
GGGCUGGCGGG	chr7:2291632-2291873(-)$1	241	99	110	14.9444
gggcggggagg	chr10:88854826-88855099(+)$1	273	41	52	16.3333
gggcggggggc	chr1:245026227-245026485(-)$1	258	70	81	19.6666
GGGCAGGGCCG	chr17:73315834-73316061(-)$1	227	72	83	14.9444
GGGUGGGGGUC	chr17:73233863-73234121(-)$1	258	102	113	15.8703
GGGCGGGUGGG	chr2:191513789-191514050(+)$1	261	88	99	15.8703
GGGCUGGGGUG	chr1:120164841-120165129(-)$1	288	111	122	18.4629
GGGCAGGGAGG	chr17:38077751-38077997(-)$1	246	1	12	15.2222
GGGCAGAGGUG	chr20:62330180-62330433(-)$1	253	232	243	14.3888

#otherMatches

#Struct PSSM
}DDDD}BB}CC	chrX:102840512-102840872(+)$1	360	321	332	18.4629
!ffffff[fff	chr11:2159442-2159661(-)$1	219	171	182	12.1666
d22bb]a]ccc	chr19:1585350-1585619(-)$1	269	239	250	18.4629
c]bb:::::::	chr10:111987333-111987590(+)$1	257	43	54	13.4629
D:eeeeessss	chr16:2579760-2580002(+)$1	242	218	229	17.7222
nnnnneeeeee	chr1:155243034-155243283(-)$1	249	65	76	20.3148
3ccc333ccc]	chr3:128840726-128841018(-)$1	292	241	252	16.2407
###dddd[bbn	chr6:32796313-32796571(-)$1	258	110	121	15.7777
}BB}EEEEEDD	chr3:49571748-49571972(+)$1	224	94	105	14.0185
eeee!!ccc[c	chr16:75284635-75284913(-)$1	278	120	131	15.9629
{ANNNNNGGGG	chr6:7910208-7910477(-)$1	269	20	31	14.0185
dllldddd]dd	chr7:1577272-1577613(+)$1	341	15	26	12.9999
aDDDD{CCC{E	chr7:27153317-27153564(-)$1	247	40	51	19.5740
pppa]a]ffff	chr3:10982076-10982341(+)$1	265	43	54	14.7592
LBB{CCC{EEE	chr2:241568619-241568929(+)$1	310	24	35	14.2037
{EEEEE{BBMM	chr9:139743343-139743634(+)$1	291	27	38	15.5925
ffCCCLLLIII	chr9:136229283-136229525(-)$1	242	17	28	17.7222
:::::::::::	chr13:50571030-50571280(+)$1	250	6	17	16.2407
ffff!!fffff	chr12:109124488-109124827(-)$1	339	100	111	17.3518
ggggg[cccff	chr16:4588168-4588431(-)$1	263	221	232	15.2222
GGGGGG::ddd	chr17:42295711-42295981(-)$1	270	37	48	15.5925
&&&a"""a[a"	chr3:52444128-52444410(+)$1	282	17	28	15.5925
nnnnncccccc	chr16:57418088-57418323(+)$1	235	184	195	15.1296
eeee[ccc"""	chr17:79825594-79825823(+)$1	229	94	105	19.6666
hhhffffff]c	chr8:41787592-41787866(-)$1	274	80	91	14.3888
33ddddGGGGG	chr22:36662404-36662684(+)$1	280	127	138	13.4629
ggggggg]ddd	chr3:32937277-32937542(+)$1	265	109	120	13.6481
EEEEHHHHHHH	chr1:19544628-19544928(-)$1	300	119	130	15.4999
[ggggggg###	chr11:62392263-62392525(-)$1	262	103	114	14.7592
]dddd]dddd=	chr3:49571731-49571948(+)$1	217	111	122	14.0185
[arrrrrrrrr	chr19:47504920-47505188(+)$1	268	66	77	16.6111
ffffff[eeee	chr3:52567594-52567848(-)$1	254	29	40	15.4074
mmmdddd]ccc	chr11:208941-209281(+)$1	340	13	24	14.9444
======hhhhh	chr2:75119794-75120055(+)$1	261	135	146	13.9259
eeeee!!bb[c	chr1:44170849-44171111(+)$1	262	34	45	15.2222
CCBB}BB}FFF	chr12:57504871-57505139(-)$1	268	251	262	14.9444
===gggggggq	chr17:47127529-47127794(+)$1	265	120	131	14.6666
ccc]bbEEEEE	chr1:29652794-29653057(+)$1	263	245	256	14.2037
DYYFFFFFFYY	chr9:136627648-136627897(-)$1	249	172	183	16.9814
eeee]ccc::D	chr15:65620179-65620437(-)$1	258	197	208	14.0185
JJJJJJJJKKC	chr19:35491152-35491400(+)$1	248	17	28	18.0925
hhhhhhhccco	chr11:2154306-2154511(-)$1	205	129	140	13.8333
DDNNNNNA{CC	chr19:10222219-10222520(+)$1	301	87	98	17.6296
CC}HHHHHHHH	chr5:180236976-180237256(-)$1	280	263	274	15.8703
]ccc::fffff	chr3:195622668-195622955(-)$1	287	107	118	20.3148
!!bb!!ddddd	chr7:2291632-2291873(-)$1	241	99	110	14.9444
((dddd[a(((	chr10:88854826-88855099(+)$1	273	41	52	16.3333
ddd[ggggggg	chr1:245026227-245026485(-)$1	258	70	81	19.6666
ffoooooofff	chr17:73315834-73316061(-)$1	227	72	83	14.9444
fff::::gggg	chr17:73233863-73234121(-)$1	258	102	113	15.8703
ddddd]hhhhh	chr2:191513789-191514050(+)$1	261	88	99	15.8703
b!!bboooooo	chr1:120164841-120165129(-)$1	288	111	122	18.4629
CCC{BB{EEEE	chr17:38077751-38077997(-)$1	246	1	12	15.2222
occc4444ggg	chr20:62330180-62330433(-)$1	253	232	243	14.3888

#DB
.)))).)).))	chrX:102840512-102840872(+)$1	1	321	332	18.4629
.((((((.(((	chr11:2159442-2159661(-)$1	1	171	182	12.1666
)..)).).)))	chr19:1585350-1585619(-)$1	1	239	250	18.4629
).)).......	chr10:111987333-111987590(+)$1	1	43	54	13.4629
).(((((....	chr16:2579760-2580002(+)$1	1	218	229	17.7222
.....)))))(	chr1:155243034-155243283(-)$1	1	65	76	20.3148
.)))...))).	chr3:128840726-128841018(-)$1	1	241	252	16.2407
...((((.((.	chr6:32796313-32796571(-)$1	1	110	121	15.7777
.)).)))))))	chr3:49571748-49571972(+)$1	1	94	105	14.0185
((((..(((.(	chr16:75284635-75284913(-)$1	1	120	131	15.9629
.(.....((((	chr6:7910208-7910477(-)$1	1	20	31	14.0185
(...)))).))	chr7:1577272-1577613(+)$1	1	15	26	12.9999
)((((.(((.(	chr7:27153317-27153564(-)$1	1	40	51	19.5740
...).).))))	chr3:10982076-10982341(+)$1	1	43	54	14.7592
.((.(((.(((	chr2:241568619-241568929(+)$1	1	24	35	14.2037
.(((((.((..	chr9:139743343-139743634(+)$1	1	27	38	15.5925
))(((...(((	chr9:136229283-136229525(-)$1	1	17	28	17.7222
...........	chr13:50571030-50571280(+)$1	1	6	17	16.2407
((((..(((((	chr12:109124488-109124827(-)$1	1	100	111	17.3518
(((((.(((((	chr16:4588168-4588431(-)$1	1	221	232	15.2222
((((((..(((	chr17:42295711-42295981(-)$1	1	37	48	15.5925
...(...(.(.	chr3:52444128-52444410(+)$1	1	17	28	15.5925
.....))))))	chr16:57418088-57418323(+)$1	1	184	195	15.1296
((((.(((...	chr17:79825594-79825823(+)$1	1	94	105	19.6666
))))))))).)	chr8:41787592-41787866(-)$1	1	80	91	14.3888
..)))))))))	chr22:36662404-36662684(+)$1	1	127	138	13.4629
))))))).)))	chr3:32937277-32937542(+)$1	1	109	120	13.6481
(((((((((((	chr1:19544628-19544928(-)$1	1	119	130	15.4999
.(((((((...	chr11:62392263-62392525(-)$1	1	103	114	14.7592
.)))).)))))	chr3:49571731-49571948(+)$1	1	111	122	14.0185
.(.........	chr19:47504920-47505188(+)$1	1	66	77	16.6111
((((((.((((	chr3:52567594-52567848(-)$1	1	29	40	15.4074
...)))).)))	chr11:208941-209281(+)$1	1	13	24	14.9444
(((((((((((	chr2:75119794-75120055(+)$1	1	135	146	13.9259
(((((..((.(	chr1:44170849-44171111(+)$1	1	34	45	15.2222
)))).)).)))	chr12:57504871-57505139(-)$1	1	251	262	14.9444
)))(((((((.	chr17:47127529-47127794(+)$1	1	120	131	14.6666
))).)))))))	chr1:29652794-29653057(+)$1	1	245	256	14.2037
)..))))))..	chr9:136627648-136627897(-)$1	1	172	183	16.9814
)))).)))..)	chr15:65620179-65620437(-)$1	1	197	208	14.0185
((((((((..(	chr19:35491152-35491400(+)$1	1	17	28	18.0925
((((((((((.	chr11:2154306-2154511(-)$1	1	129	140	13.8333
((.....(.((	chr19:10222219-10222520(+)$1	1	87	98	17.6296
)).))))))))	chr5:180236976-180237256(-)$1	1	263	274	15.8703
.)))..(((((	chr3:195622668-195622955(-)$1	1	107	118	20.3148
..((..(((((	chr7:2291632-2291873(-)$1	1	99	110	14.9444
..((((.(...	chr10:88854826-88855099(+)$1	1	41	52	16.3333
(((.(((((((	chr1:245026227-245026485(-)$1	1	70	81	19.6666
((......)))	chr17:73315834-73316061(-)$1	1	72	83	14.9444
)))....((((	chr17:73233863-73234121(-)$1	1	102	113	15.8703
))))).)))))	chr2:191513789-191514050(+)$1	1	88	99	15.8703
(..((......	chr1:120164841-120165129(-)$1	1	111	122	18.4629
(((.((.((((	chr17:38077751-38077997(-)$1	1	1	12	15.2222
.)))....)))	chr20:62330180-62330433(-)$1	1	232	243	14.3888

#PSSM
G : 0.70	g : 0.24	C : 0.03	U : 0.01	
G : 0.70	g : 0.24	A : 0.01	U : 0.01	C : 0.01	
G : 0.72	g : 0.24	A : 0.01	C : 0.01	
C : 0.55	c : 0.18	U : 0.11	G : 0.05	A : 0.03	u : 0.03	a : 0.01	
G : 0.27	A : 0.25	U : 0.22	g : 0.20	u : 0.03	
G : 0.70	g : 0.24	U : 0.03	A : 0.01	
G : 0.64	g : 0.22	U : 0.05	A : 0.05	c : 0.01	
G : 0.72	g : 0.20	c : 0.03	C : 0.01	U : 0.01	
G : 0.70	g : 0.18	a : 0.03	C : 0.03	A : 0.03	
G : 0.27	C : 0.20	A : 0.16	U : 0.12	c : 0.11	g : 0.05	u : 0.03	a : 0.01	
G : 0.31	C : 0.22	U : 0.12	g : 0.12	A : 0.11	c : 0.07	a : 0.01	

#score	854.4074074074069
#seq	54
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_transcript_m1_run1.nuc.txt

#NT
AAAGACUUAAAAAGCAAA	chr8:91318454-91318680(+)$1	226	46	64	22.0769
AAAAAAAGUAAAAGAUAU	chr9:101893797-101894059(+)$1	262	125	143	22.3653
AAAUAAUGAAAAAGAGCA	chr10:881907-882169(-)$1	262	126	144	19.6730
aaauaaauaaaauaauau	chr7:44048987-44049274(-)$1	287	75	93	24.8653
aaaaaaauaauaauacaa	chr2:68425943-68426194(-)$1	251	81	99	24.5769
aauuaaauaaauuuaaac	chr12:70675551-70675827(+)$1	276	63	81	20.5384
aaauaaauaaauaaauaa	chr5:53567567-53567839(-)$1	272	64	82	26.6923
UAAAAGUUAAAAAGAAAG	chr20:57469433-57469738(+)$1	305	122	140	21.2115
aaaaauuuaaaaaguaau	chr22:42199356-42199618(+)$1	262	89	107	23.1346
aaauaaauaaaaagaaaC	chr21:45453674-45453941(+)$1	267	71	89	31.8846
aaagaaagaaaaagaaau	chr1:51108863-51109137(-)$1	274	251	269	28.0384
aaaaaaagaaaaGGGAAU	chr7:120636272-120636520(+)$1	248	68	86	21.1153
uaauaauuaaaaauaaaa	chr3:6623095-6623333(+)$1	238	22	40	26.4038
UUAAAAAUAAAAAGUAAA	chr4:32075684-32075962(+)$1	278	94	112	20.7307
aaauaaauaaaauaaaau	chr7:119405889-119406132(-)$1	243	79	97	28.2307
AAAUCAGUAAUAACAAAA	chr10:33223409-33223869(-)$1	460	99	117	20.4423
AAAGAUAUAAUAAGAUAU	chr17:68050155-68050417(-)$1	262	23	41	20.5384
AAAAUAUUUAAAAGAAAG	chr1:241792482-241792755(-)$1	273	221	239	22.2692
AAACAAAAUAAUAAAAAU	chr6:56917835-56918101(+)$1	266	170	188	21.0192
aaauaaauaagaauaaaa	chr1:94368660-94368944(-)$1	284	91	109	28.5192
AAAUAAUUCAGGAGAAAA	chr13:69863001-69863285(+)$1	284	151	169	20.5384
aaauaaauaaauaaaaau	chr12:69642999-69643321(+)$1	322	55	73	29.6730
AAAAUAAUAAUAAUAAAA	chr3:9503092-9503388(+)$1	296	105	123	24.8653
acauuaauaaaaauaaac	chr13:69864221-69864494(+)$1	273	44	62	23.1346
AAACAUUUAAAAAGUAAU	chr18:1348071-1348318(-)$1	247	136	154	21.8846
auaaacauaaauagaaau	chr6:76352732-76352994(+)$1	262	161	179	22.3653
aaaaaaagaaaaaauuag	chr10:72515546-72515810(+)$1	264	59	77	19.9615
GAAGAAUUAAAAAGAUAU	chr3:194181635-194181914(-)$1	279	22	40	21.5961
aaauaaaugaauaaauaa	chr15:20597153-20597417(-)$1	264	56	74	22.7499
aaauaaauaaaaauuaaa	chr7:119381384-119381673(-)$1	289	261	279	28.9038
auaaaAAUUAAAAGAAUA	chr22:19358757-19359012(-)$1	255	14	32	20.8269
agaaaauuaaaaaUUAAA	chr7:119536115-119536345(-)$1	230	173	191	22.0769
aaauaaguacagauaaac	chr8:91446163-91446471(+)$1	308	115	133	20.1538
AAAUAAAUAAAUUAAAUG	chr5:86687606-86687879(-)$1	273	97	115	20.3461
aauaaaauaauuagaaau	chr5:104672191-104672504(-)$1	313	87	105	21.9807
AAAUAAAUAAAUGUAAAU	chr8:93868304-93868563(-)$1	259	84	102	25.9230
aaauacacagaaauaaac	chr18:1348567-1348811(-)$1	244	8	26	19.1923
aaaaaaaaaaaaaaaaaa	chr8:23429670-23429910(+)$1	240	46	64	28.4230
AAAGUAAUUAAAGGAAAA	chr21:23600495-23600770(+)$1	275	20	38	20.7307
aaauaaagcaagagaaau	chr2:26305967-26306313(+)$1	346	85	103	22.8461
aagcaaauuaaaaaaaau	chr4:23012052-23012294(+)$1	242	50	68	22.1730
AAAAGAAUAAUAAGAAAC	chr8:91295443-91295694(+)$1	251	200	218	23.7115
aaagaaauaaauuuaaua	chr7:119405403-119405624(-)$1	221	64	82	20.5384
caaaaauaaaagagaaaa	chr21:23689813-23690066(+)$1	253	30	48	19.9615
aaauuauuaaaaauacaa	chr7:119424168-119424413(-)$1	245	76	94	23.2307
aaauaaauaaauauaaaa	chr1:100894696-100894994(+)$1	298	82	100	30.2499
AAACUGUUAAAAAGAAAA	chr17:44192116-44192434(-)$1	318	140	158	22.2692
AAAUACUCAAAAAGAAAU	chr2:145232126-145232437(-)$1	311	67	85	23.8076
aaauacauaaaaaaaaaa	chr7:120811040-120811270(+)$1	230	67	85	28.8076
aaaaaaaaaaaaaaaaac	chr15:30965975-30966237(+)$1	262	69	87	26.9807
aaaacauuaaaaaaaaaU	chr4:71775142-71775492(+)$1	350	84	102	25.6346

#otherMatches

#Struct PSSM
:::::::::::::::::g	chr22:48121225-48121475(+)$1	250	19	37	23.1346
:GGGGGGG::::::::::	chr8:91318454-91318680(+)$1	226	46	64	22.0769
::::::::::::::::::	chr9:101893797-101894059(+)$1	262	125	143	22.3653
nnnnnccc:::::bbbb[	chr10:881907-882169(-)$1	262	126	144	19.6730
=====ssssssssss===	chr7:44048987-44049274(-)$1	287	75	93	24.8653
^^^^^^^^^^^^^^^^^^	chr2:68425943-68426194(-)$1	251	81	99	24.5769
hhhhnnnnnhhhhhhhh4	chr12:70675551-70675827(+)$1	276	63	81	20.5384
e^^^^^^^^^^^^^^^^^	chr5:53567567-53567839(-)$1	272	64	82	26.6923
::::::::::::::::::	chr20:57469433-57469738(+)$1	305	122	140	21.2115
vvvvvvvvvvvvvbb333	chr22:42199356-42199618(+)$1	262	89	107	23.1346
::::::::::::ccc###	chr21:45453674-45453941(+)$1	267	71	89	31.8846
::::::::::::::::::	chr1:51108863-51109137(-)$1	274	251	269	28.0384
::eeeee####eeeeemm	chr7:120636272-120636520(+)$1	248	68	86	21.1153
ffff::::::::::::::	chr3:6623095-6623333(+)$1	238	22	40	26.4038
ccrrrrrrrrrccc::::	chr4:32075684-32075962(+)$1	278	94	112	20.7307
::::::::::::::::::	chr7:119405889-119406132(-)$1	243	79	97	28.2307
c]ggggggg>>>>>>>>>	chr10:33223409-33223869(-)$1	460	99	117	20.4423
gg[dddd&&&&&&&ffff	chr17:68050155-68050417(-)$1	262	23	41	20.5384
:::::::HHHHHHHH}BB	chr1:241792482-241792755(-)$1	273	221	239	22.2692
oobb]dddd]eeeee:::	chr6:56917835-56918101(+)$1	266	170	188	21.0192
::::GGGGGGG:::::::	chr1:94368660-94368944(-)$1	284	91	109	28.5192
ii999999999eeeee::	chr13:69863001-69863285(+)$1	284	151	169	20.5384
::::::::::::::::::	chr12:69642999-69643321(+)$1	322	55	73	29.6730
SSSSSSSSSSFFFFFF{D	chr3:9503092-9503388(+)$1	296	105	123	24.8653
:ddddyyyyyyyyyyyyy	chr13:69864221-69864494(+)$1	273	44	62	23.1346
EYYFFFFFFZZZFFFFFF	chr18:1348071-1348318(-)$1	247	136	154	21.8846
^^^^^^^^^^^^^^^^^^	chr6:76352732-76352994(+)$1	262	161	179	22.3653
d:::::::::::::::::	chr10:72515546-72515810(+)$1	264	59	77	19.9615
nnneeeee:::::::::e	chr3:194181635-194181914(-)$1	279	22	40	21.5961
>>>>>>>>>>>>>>>>>>	chr15:20597153-20597417(-)$1	264	56	74	22.7499
hhhh::::::::::::::	chr7:119381384-119381673(-)$1	289	261	279	28.9038
::::::::::::::::::	chr22:19358757-19359012(-)$1	255	14	32	20.8269
d^^^^^^^^^^^^^^^^^	chr7:119536115-119536345(-)$1	230	173	191	22.0769
###eeeeeqqqqqqqqee	chr8:91446163-91446471(+)$1	308	115	133	20.1538
###cccnnnnnccc4444	chr5:86687606-86687879(-)$1	273	97	115	20.3461
::::::::::eeeee!!c	chr5:104672191-104672504(-)$1	313	87	105	21.9807
dssssssssssdddd444	chr8:93868304-93868563(-)$1	259	84	102	25.9230
nnnnnccc::::::::::	chr18:1348567-1348811(-)$1	244	8	26	19.1923
eee:::::::::::::::	chr8:23429670-23429910(+)$1	240	46	64	28.4230
ccc''''''''hhhhhhh	chr21:23600495-23600770(+)$1	275	20	38	20.7307
::::::::::GGGGGGGK	chr2:26305967-26306313(+)$1	346	85	103	22.8461
:::::::::::::::::d	chr4:23012052-23012294(+)$1	242	50	68	22.1730
]eeeeedddd!!ccc[bb	chr8:91295443-91295694(+)$1	251	200	218	23.7115
^^^^^^^^^^^^^^^^hh	chr7:119405403-119405624(-)$1	221	64	82	20.5384
!ffffff####dddd###	chr21:23689813-23690066(+)$1	253	30	48	19.9615
mddddhhhhhhhh:::::	chr7:119424168-119424413(-)$1	245	76	94	23.2307
::cccooooooccc::::	chr1:100894696-100894994(+)$1	298	82	100	30.2499
:::eeeee####ddddoo	chr17:44192116-44192434(-)$1	318	140	158	22.2692
sssssddddFFFFFFLLL	chr2:145232126-145232437(-)$1	311	67	85	23.8076
::::::::::::::::::	chr7:120811040-120811270(+)$1	230	67	85	28.8076
^^^^^^^^^^^^^^^^^^	chr15:30965975-30966237(+)$1	262	69	87	26.9807
JJJJ::::::::::::::	chr4:71775142-71775492(+)$1	350	84	102	25.6346

#DB
.................(	chr22:48121225-48121475(+)$1	1	19	37	23.1346
.(((((((..........	chr8:91318454-91318680(+)$1	1	46	64	22.0769
..................	chr9:101893797-101894059(+)$1	1	125	143	22.3653
.....))).....((((.	chr10:881907-882169(-)$1	1	126	144	19.6730
(((((..........)))	chr7:44048987-44049274(-)$1	1	75	93	24.8653
..................	chr2:68425943-68426194(-)$1	1	81	99	24.5769
((((.....)))))))).	chr12:70675551-70675827(+)$1	1	63	81	20.5384
(.................	chr5:53567567-53567839(-)$1	1	64	82	26.6923
..................	chr20:57469433-57469738(+)$1	1	122	140	21.2115
.............))...	chr22:42199356-42199618(+)$1	1	89	107	23.1346
............(((...	chr21:45453674-45453941(+)$1	1	71	89	31.8846
..................	chr1:51108863-51109137(-)$1	1	251	269	28.0384
..(((((....(((((..	chr7:120636272-120636520(+)$1	1	68	86	21.1153
))))..............	chr3:6623095-6623333(+)$1	1	22	40	26.4038
((.........)))....	chr4:32075684-32075962(+)$1	1	94	112	20.7307
..................	chr7:119405889-119406132(-)$1	1	79	97	28.2307
).))))))).........	chr10:33223409-33223869(-)$1	1	99	117	20.4423
((.((((.......((((	chr17:68050155-68050417(-)$1	1	23	41	20.5384
.......)))))))).))	chr1:241792482-241792755(-)$1	1	221	239	22.2692
..)).)))).)))))...	chr6:56917835-56918101(+)$1	1	170	188	21.0192
....(((((((.......	chr1:94368660-94368944(-)$1	1	91	109	28.5192
)).........)))))..	chr13:69863001-69863285(+)$1	1	151	169	20.5384
..................	chr12:69642999-69643321(+)$1	1	55	73	29.6730
..........((((((.(	chr3:9503092-9503388(+)$1	1	105	123	24.8653
.((((.............	chr13:69864221-69864494(+)$1	1	44	62	23.1346
)..))))))...))))))	chr18:1348071-1348318(-)$1	1	136	154	21.8846
..................	chr6:76352732-76352994(+)$1	1	161	179	22.3653
).................	chr10:72515546-72515810(+)$1	1	59	77	19.9615
...))))).........(	chr3:194181635-194181914(-)$1	1	22	40	21.5961
..................	chr15:20597153-20597417(-)$1	1	56	74	22.7499
))))..............	chr7:119381384-119381673(-)$1	1	261	279	28.9038
..................	chr22:19358757-19359012(-)$1	1	14	32	20.8269
(.................	chr7:119536115-119536345(-)$1	1	173	191	22.0769
...(((((........))	chr8:91446163-91446471(+)$1	1	115	133	20.1538
...(((.....)))....	chr5:86687606-86687879(-)$1	1	97	115	20.3461
..........(((((..(	chr5:104672191-104672504(-)$1	1	87	105	21.9807
(..........))))...	chr8:93868304-93868563(-)$1	1	84	102	25.9230
.....)))..........	chr18:1348567-1348811(-)$1	1	8	26	19.1923
)))...............	chr8:23429670-23429910(+)$1	1	46	64	28.4230
(((........(((((((	chr21:23600495-23600770(+)$1	1	20	38	20.7307
..........(((((((.	chr2:26305967-26306313(+)$1	1	85	103	22.8461
.................(	chr4:23012052-23012294(+)$1	1	50	68	22.1730
.)))))((((..(((.((	chr8:91295443-91295694(+)$1	1	200	218	23.7115
................))	chr7:119405403-119405624(-)$1	1	64	82	20.5384
.((((((....((((...	chr21:23689813-23690066(+)$1	1	30	48	19.9615
.)))))))))))).....	chr7:119424168-119424413(-)$1	1	76	94	23.2307
..(((......)))....	chr1:100894696-100894994(+)$1	1	82	100	30.2499
...(((((....((((..	chr17:44192116-44192434(-)$1	1	140	158	22.2692
.....))))((((((...	chr2:145232126-145232437(-)$1	1	67	85	23.8076
..................	chr7:120811040-120811270(+)$1	1	67	85	28.8076
..................	chr15:30965975-30966237(+)$1	1	69	87	26.9807
((((..............	chr4:71775142-71775492(+)$1	1	84	102	25.6346

#PSSM
a : 0.59	A : 0.30	U : 0.03	u : 0.01	G : 0.01	c : 0.01	
a : 0.55	A : 0.34	u : 0.03	U : 0.01	c : 0.01	g : 0.01	
a : 0.57	A : 0.36	u : 0.03	g : 0.01	
u : 0.32	a : 0.23	A : 0.11	U : 0.11	G : 0.07	C : 0.05	c : 0.03	g : 0.03	
a : 0.57	A : 0.24	U : 0.07	u : 0.03	C : 0.01	G : 0.01	c : 0.01	
a : 0.53	A : 0.26	c : 0.05	C : 0.03	G : 0.03	U : 0.03	u : 0.01	
a : 0.48	A : 0.19	U : 0.17	u : 0.11	G : 0.01	g : 0.01	
u : 0.46	U : 0.30	g : 0.07	a : 0.05	G : 0.03	A : 0.01	c : 0.01	C : 0.01	
a : 0.53	A : 0.26	U : 0.09	c : 0.03	C : 0.01	g : 0.01	u : 0.01	
a : 0.57	A : 0.38	c : 0.01	g : 0.01	
a : 0.55	A : 0.28	U : 0.07	u : 0.03	g : 0.01	G : 0.01	
a : 0.38	A : 0.30	u : 0.17	U : 0.05	g : 0.05	G : 0.01	
a : 0.51	A : 0.32	u : 0.07	G : 0.05	U : 0.01	
G : 0.30	u : 0.23	a : 0.21	g : 0.13	U : 0.05	A : 0.03	C : 0.01	
a : 0.51	A : 0.32	u : 0.05	U : 0.05	C : 0.01	G : 0.01	
a : 0.46	A : 0.34	u : 0.07	U : 0.05	c : 0.03	G : 0.01	
a : 0.55	A : 0.36	U : 0.03	C : 0.01	u : 0.01	
a : 0.23	A : 0.19	U : 0.17	u : 0.17	c : 0.09	G : 0.05	g : 0.03	C : 0.03	

#score	1222.9999999999995
#seq	52
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_CDS_m1_run1.nuc.txt

#NT
UGAGAAGGAG	chr12:57038630-57038837(-)$1	207	19	29	15.0862
gguggaggag	chr15:38776747-38777033(+)$1	286	83	93	16.6379
GGGGGAGGAU	chr1:44441378-44441621(+)$1	243	155	165	15.5172
GGGGAGGGCG	chr16:29816330-29816555(+)$1	225	36	46	15.9482
GGGGUGGGAG	chr7:100172776-100173071(-)$1	295	67	77	17.5862
GGGGAGGGUG	chr17:73823417-73823680(-)$1	263	106	116	16.1206
GCGGAGGGAG	chr16:88782358-88782602(-)$1	244	112	122	16.2068
GGGGAAGGGG	chr3:48481851-48482064(+)$1	213	170	180	17.6724
GGAGGAGGAG	chr19:49377746-49377981(+)$1	235	63	73	17.4137
gggcaaggag	chr1:197115423-197115672(-)$1	249	70	80	17.2413
GGGGAGAGAG	chr17:79826298-79826572(-)$1	274	62	72	15.7758
GGGGACUGAG	chr19:42364762-42365014(+)$1	252	161	171	14.3103
GUGGGAGGAG	chr14:68117819-68118154(-)$1	335	181	191	15.7758
ggggaugggg	chr12:19593039-19593297(+)$1	258	41	51	14.8275
GGGGAUGGAC	chr19:46116698-46116970(-)$1	272	191	201	14.7413
GGUGGAGGAG	chr1:44441881-44442140(+)$1	259	123	133	16.6379
GCGGAGGGAG	chrX:11316666-11316982(-)$1	316	95	105	16.2068
GGAGAAUGAG	chr11:64084428-64084670(-)$1	242	95	105	14.9137
GGGGAGGGAG	chr5:179248459-179248763(+)$1	304	139	149	20.2586
GGAGUAGGAG	chr8:145107126-145107378(-)$1	252	77	87	16.7241
GGGGAGGGAG	chr17:27076844-27077127(+)$1	283	97	107	20.2586
GGAGAAGGAG	chr19:47634128-47634384(+)$1	256	64	74	19.3965
Agggaaggag	chr14:23790882-23791118(+)$1	236	150	160	17.6724
AGAGAAGGAG	chr21:45223536-45223859(+)$1	323	27	37	15.2586
GUGGAGGGAG	chr3:49052873-49053146(+)$1	273	161	171	16.2068
GGAGAAGGAC	chr1:110950155-110950401(-)$1	246	105	115	15.1724
GGGGAGGGAG	chr12:123950625-123950959(+)$1	334	172	182	20.2586
GGGGAAAGAG	chr11:62342905-62343219(-)$1	314	44	54	17.3275
GGAGGAGGAG	chr1:46083137-46083364(+)$1	227	116	126	17.4137
GAGGAUGGAG	chr19:38899392-38899751(+)$1	359	79	89	14.8275
ggggaaggag	chr1:90493023-90493315(+)$1	292	102	112	21.8103
GGUGGAGGAG	chr1:46081908-46082126(+)$1	218	130	140	16.6379
GGGGUGGGAG	chr1:32670688-32670986(+)$1	298	55	65	17.5862
GUGGAAGGAG	chr1:154918406-154918727(-)$1	321	125	135	17.7586
AGGGGAGGAG	chr19:1103987-1104239(+)$1	252	21	31	15.6896
GGGGAAGGUG	chr6:31696779-31697049(-)$1	270	186	196	17.6724
GGAGGAGGAG	chr19:40947732-40948031(-)$1	299	85	95	17.4137
GGGGUGGGAG	chr1:24021054-24021277(+)$1	223	38	48	17.5862
gggagaggag	chr1:27022727-27022995(+)$1	268	10	20	15.1724
GGAGGAGGAG	chr5:137682541-137682794(+)$1	253	1	11	17.4137
gggggaggag	chr15:38776588-38776892(+)$1	304	83	93	19.8275
gcggagggag	chr8:30669801-30670092(-)$1	291	48	58	16.2068
GGGGAAGGAG	chr19:39926387-39926637(-)$1	250	178	188	21.8103
GGGGAAGGAA	chr3:9984860-9985168(+)$1	308	80	90	17.4137
ggaggaggag	chr12:19592648-19592928(+)$1	280	95	105	17.4137
GGGGAAGGGG	chr1:1309379-1309671(-)$1	292	118	128	17.6724
GGAGAAGGAC	chr1:110950106-110950355(-)$1	249	59	69	15.1724
GGGGAAGGAU	chr14:21484942-21485194(-)$1	252	19	29	17.4999
AGUGAAGGAG	chr11:64085587-64085813(+)$1	226	199	209	14.4827
GGGGUGGGAG	chr19:55998133-55998407(+)$1	274	91	101	17.5862
GGAGAAGGUG	chr16:337962-338236(-)$1	274	99	109	15.2586
UGGGAGGGAG	chr1:186282928-186283251(-)$1	323	108	118	15.9482
GGGGAGGCAG	chr6:33257913-33258122(+)$1	209	56	66	15.4310
GGGCGAGGAG	chr6:33258002-33258235(+)$1	233	39	49	15.2586
GGGGCAGGAG	chr1:2125201-2125450(-)$1	249	218	228	18.7068
ggggaaggag	chr20:3765536-3765889(-)$1	353	67	77	21.8103
GGGGUGGGAG	chr1:24021077-24021297(+)$1	220	15	25	17.5862

#otherMatches

#Struct PSSM
dddd======	chr6:43193431-43193667(-)$1	236	107	117	16.1206
EEEKKFFFFF	chr12:57038630-57038837(-)$1	207	19	29	15.0862
eee%%%%%%d	chr15:38776747-38777033(+)$1	286	83	93	16.6379
hhhhhhmmmm	chr1:44441378-44441621(+)$1	243	155	165	15.5172
gggg:EEEEE	chr16:29816330-29816555(+)$1	225	36	46	15.9482
iiii[dddd[	chr7:100172776-100173071(-)$1	295	67	77	17.5862
::::::cccm	chr17:73823417-73823680(-)$1	263	106	116	16.1206
[ammmma]cc	chr16:88782358-88782602(-)$1	244	112	122	16.2068
dddd]fffff	chr3:48481851-48482064(+)$1	213	170	180	17.6724
cc!!a[eeee	chr19:49377746-49377981(+)$1	235	63	73	17.4137
EEEE:HHHHH	chr1:197115423-197115672(-)$1	249	70	80	17.2413
eeeegggggg	chr17:79826298-79826572(-)$1	274	62	72	15.7758
ggggdddd[f	chr19:42364762-42365014(+)$1	252	161	171	14.3103
JJJJJJJJdd	chr14:68117819-68118154(-)$1	335	181	191	15.7758
dd"""dddd!	chr12:19593039-19593297(+)$1	258	41	51	14.8275
777eeeee]=	chr19:46116698-46116970(-)$1	272	191	201	14.7413
==========	chr1:44441881-44442140(+)$1	259	123	133	16.6379
eeqqqqqqqq	chrX:11316666-11316982(-)$1	316	95	105	16.2068
]a4444bb]b	chr11:64084428-64084670(-)$1	242	95	105	14.9137
:BBLLLFFFF	chr5:179248459-179248763(+)$1	304	139	149	20.2586
dd[bb!!a[b	chr8:145107126-145107378(-)$1	252	77	87	16.7241
eeeeeeee[h	chr17:27076844-27077127(+)$1	283	97	107	20.2586
fff"""a!!b	chr19:47634128-47634384(+)$1	256	64	74	19.3965
nccc333bb]	chr14:23790882-23791118(+)$1	236	150	160	17.6724
+++++++ddd	chr21:45223536-45223859(+)$1	323	27	37	15.2586
c]bb:EEEEE	chr3:49052873-49053146(+)$1	273	161	171	16.2068
bb::::::bb	chr1:110950155-110950401(-)$1	246	105	115	15.1724
44dddd::::	chr12:123950625-123950959(+)$1	334	172	182	20.2586
:::::::DDD	chr11:62342905-62343219(-)$1	314	44	54	17.3275
cceeeeehhh	chr1:46083137-46083364(+)$1	227	116	126	17.4137
::FFFFFF{C	chr19:38899392-38899751(+)$1	359	79	89	14.8275
!bb[a[eeee	chr1:90493023-90493315(+)$1	292	102	112	21.8103
deeeeegggg	chr1:46081908-46082126(+)$1	218	130	140	16.6379
ffffbb::::	chr1:32670688-32670986(+)$1	298	55	65	17.5862
BBLLLDDDD{	chr1:154918406-154918727(-)$1	321	125	135	17.7586
:dddd[ffff	chr19:1103987-1104239(+)$1	252	21	31	15.6896
ggg]a]bb]d	chr6:31696779-31697049(-)$1	270	186	196	17.6724
HHCCC{A{BB	chr19:40947732-40948031(-)$1	299	85	95	17.4137
FF:dddd[ff	chr1:24021054-24021277(+)$1	223	38	48	17.5862
ddd"""a!!b	chr1:27022727-27022995(+)$1	268	10	20	15.1724
DDDDGGGGGG	chr5:137682541-137682794(+)$1	253	1	11	17.4137
::::::::::	chr15:38776588-38776892(+)$1	304	83	93	19.8275
cc"""ccc[a	chr8:30669801-30670092(-)$1	291	48	58	16.2068
JJJYYCCC||	chr19:39926387-39926637(-)$1	250	178	188	21.8103
ggg]a55555	chr3:9984860-9985168(+)$1	308	80	90	17.4137
nnnbb]bb]b	chr12:19592648-19592928(+)$1	280	95	105	17.4137
obb4444ddd	chr1:1309379-1309671(-)$1	292	118	128	17.6724
bb4444cccd	chr1:110950106-110950355(-)$1	249	59	69	15.1724
EEEEEEE:::	chr14:21484942-21485194(-)$1	252	19	29	17.4999
JJJJZZZBB}	chr11:64085587-64085813(+)$1	226	199	209	14.4827
bb[bbppppp	chr19:55998133-55998407(+)$1	274	91	101	17.5862
tttttttttt	chr16:337962-338236(-)$1	274	99	109	15.2586
bb22======	chr1:186282928-186283251(-)$1	323	108	118	15.9482
eeeeeeeeee	chr6:33257913-33258122(+)$1	209	56	66	15.4310
####bb"""f	chr6:33258002-33258235(+)$1	233	39	49	15.2586
gggg::BB}A	chr1:2125201-2125450(-)$1	249	218	228	18.7068
::::::::::	chr20:3765536-3765889(-)$1	353	67	77	21.8103
GGGGG:hhhh	chr1:24021077-24021297(+)$1	220	15	25	17.5862

#DB
))))))))))	chr6:43193431-43193667(-)$1	1	107	117	16.1206
(((..(((((	chr12:57038630-57038837(-)$1	1	19	29	15.0862
(((......(	chr15:38776747-38777033(+)$1	1	83	93	16.6379
((((((....	chr1:44441378-44441621(+)$1	1	155	165	15.5172
)))).(((((	chr16:29816330-29816555(+)$1	1	36	46	15.9482
((((.((((.	chr7:100172776-100173071(-)$1	1	67	77	17.5862
......(((.	chr17:73823417-73823680(-)$1	1	106	116	16.1206
.(....).))	chr16:88782358-88782602(-)$1	1	112	122	16.2068
)))).)))))	chr3:48481851-48482064(+)$1	1	170	180	17.6724
((..(.((((	chr19:49377746-49377981(+)$1	1	63	73	17.4137
)))).(((((	chr1:197115423-197115672(-)$1	1	70	80	17.2413
((((((((((	chr17:79826298-79826572(-)$1	1	62	72	15.7758
))))((((.(	chr19:42364762-42365014(+)$1	1	161	171	14.3103
))))))))((	chr14:68117819-68118154(-)$1	1	181	191	15.7758
((...((((.	chr12:19593039-19593297(+)$1	1	41	51	14.8275
...))))).)	chr19:46116698-46116970(-)$1	1	191	201	14.7413
))))))))))	chr1:44441881-44442140(+)$1	1	123	133	16.6379
((........	chrX:11316666-11316982(-)$1	1	95	105	16.2068
.)....)).)	chr11:64084428-64084670(-)$1	1	95	105	14.9137
.((...((((	chr5:179248459-179248763(+)$1	1	139	149	20.2586
((.((..(.(	chr8:145107126-145107378(-)$1	1	77	87	16.7241
)))(((((.(	chr17:27076844-27077127(+)$1	1	97	107	20.2586
(((...(..(	chr19:47634128-47634384(+)$1	1	64	74	19.3965
.)))...)).	chr14:23790882-23791118(+)$1	1	150	160	17.6724
.......(((	chr21:45223536-45223859(+)$1	1	27	37	15.2586
).)).)))))	chr3:49052873-49053146(+)$1	1	161	171	16.2068
))......((	chr1:110950155-110950401(-)$1	1	105	115	15.1724
..))))....	chr12:123950625-123950959(+)$1	1	172	182	20.2586
.......(((	chr11:62342905-62343219(-)$1	1	44	54	17.3275
))((((((((	chr1:46083137-46083364(+)$1	1	116	126	17.4137
..((((((.(	chr19:38899392-38899751(+)$1	1	79	89	14.8275
.((.(.((((	chr1:90493023-90493315(+)$1	1	102	112	21.8103
))))))((((	chr1:46081908-46082126(+)$1	1	130	140	16.6379
))))))....	chr1:32670688-32670986(+)$1	1	55	65	17.5862
((...((((.	chr1:154918406-154918727(-)$1	1	125	135	17.7586
.((((.((((	chr19:1103987-1104239(+)$1	1	21	31	15.6896
))).).)).)	chr6:31696779-31697049(-)$1	1	186	196	17.6724
(((((.(.((	chr19:40947732-40948031(-)$1	1	85	95	17.4137
((.((((.((	chr1:24021054-24021277(+)$1	1	38	48	17.5862
(((...(..(	chr1:27022727-27022995(+)$1	1	10	20	15.1724
((((((((((	chr5:137682541-137682794(+)$1	1	1	11	17.4137
..........	chr15:38776588-38776892(+)$1	1	83	93	19.8275
((...(((.(	chr8:30669801-30670092(-)$1	1	48	58	16.2068
)))..)))..	chr19:39926387-39926637(-)$1	1	178	188	21.8103
))).).....	chr3:9984860-9985168(+)$1	1	80	90	17.4137
...)).)).)	chr12:19592648-19592928(+)$1	1	95	105	17.4137
.))....)))	chr1:1309379-1309671(-)$1	1	118	128	17.6724
))....))))	chr1:110950106-110950355(-)$1	1	59	69	15.1724
(((((((...	chr14:21484942-21485194(-)$1	1	19	29	17.4999
))))...)).	chr11:64085587-64085813(+)$1	1	199	209	14.4827
((.((.....	chr19:55998133-55998407(+)$1	1	91	101	17.5862
..........	chr16:337962-338236(-)$1	1	99	109	15.2586
))..))))))	chr1:186282928-186283251(-)$1	1	108	118	15.9482
))))))))))	chr6:33257913-33258122(+)$1	1	56	66	15.4310
....((...(	chr6:33258002-33258235(+)$1	1	39	49	15.2586
))))..)).)	chr1:2125201-2125450(-)$1	1	218	228	18.7068
..........	chr20:3765536-3765889(-)$1	1	67	77	21.8103
(((((.((((	chr1:24021077-24021297(+)$1	1	15	25	17.5862

#PSSM
G : 0.74	g : 0.15	A : 0.06	U : 0.03	
G : 0.70	g : 0.15	U : 0.05	A : 0.03	C : 0.03	c : 0.01	
G : 0.56	A : 0.20	g : 0.13	U : 0.05	u : 0.01	a : 0.01	
G : 0.81	g : 0.13	c : 0.01	a : 0.01	C : 0.01	
A : 0.53	G : 0.17	U : 0.10	a : 0.10	g : 0.06	C : 0.01	
A : 0.48	G : 0.29	a : 0.13	U : 0.03	C : 0.01	u : 0.01	g : 0.01	
G : 0.75	g : 0.17	A : 0.03	U : 0.03	
G : 0.81	g : 0.17	C : 0.01	
A : 0.72	a : 0.15	U : 0.05	G : 0.03	C : 0.01	g : 0.01	
G : 0.72	g : 0.17	C : 0.05	U : 0.03	A : 0.01	

#score	985.344827586207
#seq	58
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_transcript_m3_run2.nuc.txt

#NT
GAGCUGCAG	chr20:61912710-61912943(+)$1	233	66	75	12.6250
GAGCAGGAG	chr9:71844991-71845224(+)$1	233	118	127	12.1785
AUGGUGGAG	chr3:50609437-50609740(+)$1	303	238	247	11.5535
AUGCUGGAG	chr22:19444019-19444240(-)$1	221	108	117	14.8571
AAACUGGAC	chr11:611816-612063(+)$1	247	166	175	10.6607
AAUCUGGAU	chr1:154218587-154218925(+)$1	338	150	159	10.6607
AAGCUGCUG	chr16:67314356-67314625(+)$1	269	74	83	11.0178
AAGCUGUGG	chr3:42658967-42659237(+)$1	270	195	204	10.6607
AAGCUGAAG	chr16:113626-113897(-)$1	271	193	202	15.3035
AGUCUGGAG	chr19:7704563-7704793(+)$1	230	91	100	10.8392
AAGCCGGAG	chr8:11687652-11687928(+)$1	276	139	148	14.5892
AAGCUGGAG	chr16:84216748-84217018(-)$1	270	151	160	18.3392
AUGCUGGAA	chr18:47801244-47801504(-)$1	260	226	235	11.4642
UAGCUGGAG	chr16:23848616-23848828(+)$1	212	22	31	15.1250
AAGCCGGAG	chr10:7412144-7412430(-)$1	286	253	262	14.5892
CAGCUGAAG	chr3:33663526-33663820(-)$1	294	45	54	12.4464
AAGAGGGAG	chr9:139723764-139724007(+)$1	243	174	183	11.1964
AGGUUGGAG	chr17:26960218-26960465(-)$1	247	208	217	11.4642
AAGCUGGUG	chr20:61907747-61908001(+)$1	254	140	149	14.2321
GAGCUGGAA	chr11:71734052-71734293(-)$1	241	165	174	12.4464
GAGUUGGAG	chr16:50339356-50339596(+)$1	240	7	16	12.2678
aCGCUGGUG	chr5:10391690-10391944(+)$1	254	108	117	10.6607
AAGAUGAAG	chr19:1080178-1080479(+)$1	301	16	25	11.8214
AAGCUGAAG	chr15:75653099-75653338(-)$1	239	114	123	15.3035
CAGCUGCAG	chr1:31441112-31441342(-)$1	230	82	91	12.2678
CAGCAGGAG	chr3:9979599-9979817(+)$1	218	100	109	11.8214
GAGGUGGAG	chr16:2867259-2867550(+)$1	291	131	140	12.5357
AGGCUGGAA	chr16:24826367-24826697(+)$1	330	120	129	11.6428
CAGCAGGAG	chr12:57499150-57499464(-)$1	314	116	125	11.8214
AAGCUGGAA	chr17:45897259-45897557(-)$1	298	21	30	14.9464
AAGCUGGAC	chr11:118962020-118962270(+)$1	250	129	138	14.8571
UGGCUGGAG	chr12:6687519-6687755(-)$1	236	5	14	11.8214
GAGGUGGAG	chr17:58378900-58379161(-)$1	261	2	11	12.5357
GAGCUGGAC	chr19:47233887-47234167(-)$1	280	140	149	12.3571
AAUCUGGAU	chr8:48798542-48798797(-)$1	255	236	245	10.6607
AAACUGCAG	chr17:80841953-80842171(+)$1	218	103	112	10.9285
GAGCUGAAG	chr16:87741515-87741781(-)$1	266	209	218	12.8035
AAAAUGGAG	chr7:12381665-12381879(-)$1	214	120	129	10.6607
CAGCGGGAG	chr19:1046489-1046748(+)$1	259	56	65	11.8214
AAGGUGAAG	chr1:6697157-6697462(-)$1	305	124	133	12.0000
AAGCUGGGA	chr17:27235695-27235965(-)$1	270	179	188	10.6607
AUGCUGCAG	chr5:134147326-134147565(+)$1	239	195	204	11.6428
ACGCUGGAU	chrX:153994528-153994769(+)$1	241	65	74	11.2857
AAGGAGGAG	chr19:55607976-55608221(-)$1	245	134	143	11.3750
AAGGCGGAG	chr1:19474956-19475211(-)$1	255	41	50	11.2857
AAGCUCGAG	chr1:1248319-1248543(-)$1	224	102	111	13.6071
AAGCUGUUG	chr1:12304315-12304592(+)$1	277	118	127	10.8392
ACGUUGGAG	chr10:103577566-103577807(-)$1	241	52	61	11.1964
AAGCGGGAG	chr19:1615588-1615827(-)$1	239	48	57	14.6785
CAGCUUGAG	chr17:42157419-42157648(-)$1	229	32	41	10.7500
aagcuggag	chr17:79603841-79604110(-)$1	269	22	31	18.3392
AGGCUGAAG	chr14:102492902-102493142(+)$1	240	56	65	12.0000
GAGCUGGAC	chr9:138829992-138830199(-)$1	207	32	41	12.3571
AGGCGGGAG	chr3:48576579-48576842(-)$1	263	30	39	11.3750
AAGCUGUAU	chr21:47635054-47635307(-)$1	253	154	163	11.4642

#otherMatches

#Struct PSSM
DDDD}FFFF	chr19:10406333-10406679(+)$1	346	134	143	12.3571
>>>>>>>>>	chr20:61912710-61912943(+)$1	233	66	75	12.6250
bb]a]dddd	chr9:71844991-71845224(+)$1	233	118	127	12.1785
!eeeeesss	chr3:50609437-50609740(+)$1	303	238	247	11.5535
]dddddddd	chr22:19444019-19444240(-)$1	221	108	117	14.8571
leeeeebb:	chr11:611816-612063(+)$1	247	166	175	10.6607
:::::ccc[	chr1:154218587-154218925(+)$1	338	150	159	10.6607
tttccc]ee	chr16:67314356-67314625(+)$1	269	74	83	11.0178
EEEEEE}CC	chr3:42658967-42659237(+)$1	270	195	204	10.6607
DZZZEEEEE	chr16:113626-113897(-)$1	271	193	202	15.3035
]ccc:bb[c	chr19:7704563-7704793(+)$1	230	91	100	10.8392
dddd55555	chr8:11687652-11687928(+)$1	276	139	148	14.5892
d!!hhhhhh	chr16:84216748-84217018(-)$1	270	151	160	18.3392
:EEEEE~~~	chr18:47801244-47801504(-)$1	260	226	235	11.4642
ffffflllf	chr16:23848616-23848828(+)$1	212	22	31	15.1250
HHHHHHH\\	chr10:7412144-7412430(-)$1	286	253	262	14.5892
:HHHHHHHH	chr3:33663526-33663820(-)$1	294	45	54	12.4464
ff:dddd[e	chr9:139723764-139724007(+)$1	243	174	183	11.1964
EEEEHHHHH	chr17:26960218-26960465(-)$1	247	208	217	11.4642
::::::ddd	chr20:61907747-61908001(+)$1	254	140	149	14.2321
""cccoooo	chr11:71734052-71734293(-)$1	241	165	174	12.4464
::::EEEEE	chr16:50339356-50339596(+)$1	240	7	16	12.2678
bb[dddd[b	chr5:10391690-10391944(+)$1	254	108	117	10.6607
bbboooooo	chr19:1080178-1080479(+)$1	301	16	25	11.8214
:cccmmmmc	chr15:75653099-75653338(-)$1	239	114	123	15.3035
IIIIIIIId	chr1:31441112-31441342(-)$1	230	82	91	12.2678
ddhhhhhhh	chr3:9979599-9979817(+)$1	218	100	109	11.8214
=======""	chr16:2867259-2867550(+)$1	291	131	140	12.5357
::dddd!!f	chr16:24826367-24826697(+)$1	330	120	129	11.6428
cc]a]bb]c	chr12:57499150-57499464(-)$1	314	116	125	11.8214
d]ccc::::	chr17:45897259-45897557(-)$1	298	21	30	14.9464
cFFFFFF::	chr11:118962020-118962270(+)$1	250	129	138	14.8571
ee[gggggg	chr12:6687519-6687755(-)$1	236	5	14	11.8214
::::::HHH	chr17:58378900-58379161(-)$1	261	2	11	12.5357
gggggg22a	chr19:47233887-47234167(-)$1	280	140	149	12.3571
44ddddbb]	chr8:48798542-48798797(-)$1	255	236	245	10.6607
eeeeeeeee	chr17:80841953-80842171(+)$1	218	103	112	10.9285
GGDDDD}CC	chr16:87741515-87741781(-)$1	266	209	218	12.8035
b22eeeeec	chr7:12381665-12381879(-)$1	214	120	129	10.6607
apppppppa	chr19:1046489-1046748(+)$1	259	56	65	11.8214
!!dddd!!d	chr1:6697157-6697462(-)$1	305	124	133	12.0000
ooeeeee55	chr17:27235695-27235965(-)$1	270	179	188	10.6607
d]eeeee22	chr5:134147326-134147565(+)$1	239	195	204	11.6428
leeeee333	chrX:153994528-153994769(+)$1	241	65	74	11.2857
NCCC{FFFF	chr19:55607976-55608221(-)$1	245	134	143	11.3750
IIIIIIIgg	chr1:19474956-19475211(-)$1	255	41	50	11.2857
]eeeee]bb	chr1:1248319-1248543(-)$1	224	102	111	13.6071
d22dddd::	chr1:12304315-12304592(+)$1	277	118	127	10.8392
2a]dddd:e	chr10:103577566-103577807(-)$1	241	52	61	11.1964
qqbbbbDDD	chr19:1615588-1615827(-)$1	239	48	57	14.6785
22dddd22c	chr17:42157419-42157648(-)$1	229	32	41	10.7500
d[ccc####	chr17:79603841-79604110(-)$1	269	22	31	18.3392
[ccc####e	chr14:102492902-102493142(+)$1	240	56	65	12.0000
ee[ccc$$$	chr9:138829992-138830199(-)$1	207	32	41	12.3571
"bb[fffff	chr3:48576579-48576842(-)$1	263	30	39	11.3750
b[ccc[a[d	chr21:47635054-47635307(-)$1	253	154	163	11.4642

#DB
)))).))))	chr19:10406333-10406679(+)$1	1	134	143	12.3571
.........	chr20:61912710-61912943(+)$1	1	66	75	12.6250
)).).))))	chr9:71844991-71845224(+)$1	1	118	127	12.1785
.(((((...	chr3:50609437-50609740(+)$1	1	238	247	11.5535
.))))((((	chr22:19444019-19444240(-)$1	1	108	117	14.8571
.))))))).	chr11:611816-612063(+)$1	1	166	175	10.6607
.....(((.	chr1:154218587-154218925(+)$1	1	150	159	10.6607
...))).))	chr16:67314356-67314625(+)$1	1	74	83	11.0178
)))))).))	chr3:42658967-42659237(+)$1	1	195	204	10.6607
)...)))))	chr16:113626-113897(-)$1	1	193	202	15.3035
.))).((.(	chr19:7704563-7704793(+)$1	1	91	100	10.8392
)))).....	chr8:11687652-11687928(+)$1	1	139	148	14.5892
(..((((((	chr16:84216748-84217018(-)$1	1	151	160	18.3392
.)))))...	chr18:47801244-47801504(-)$1	1	226	235	11.4642
(((((...)	chr16:23848616-23848828(+)$1	1	22	31	15.1250
)))))))..	chr10:7412144-7412430(-)$1	1	253	262	14.5892
.((((((((	chr3:33663526-33663820(-)$1	1	45	54	12.4464
)).((((.(	chr9:139723764-139724007(+)$1	1	174	183	11.1964
)))))))))	chr17:26960218-26960465(-)$1	1	208	217	11.4642
......(((	chr20:61907747-61908001(+)$1	1	140	149	14.2321
..(((....	chr11:71734052-71734293(-)$1	1	165	174	12.4464
....(((((	chr16:50339356-50339596(+)$1	1	7	16	12.2678
((.((((.(	chr5:10391690-10391944(+)$1	1	108	117	10.6607
(((......	chr19:1080178-1080479(+)$1	1	16	25	11.8214
.(((....)	chr15:75653099-75653338(-)$1	1	114	123	15.3035
(((((((((	chr1:31441112-31441342(-)$1	1	82	91	12.2678
))(((((((	chr3:9979599-9979817(+)$1	1	100	109	11.8214
(((((((..	chr16:2867259-2867550(+)$1	1	131	140	12.5357
..((((..(	chr16:24826367-24826697(+)$1	1	120	129	11.6428
)).).)).)	chr12:57499150-57499464(-)$1	1	116	125	11.8214
).)))....	chr17:45897259-45897557(-)$1	1	21	30	14.9464
)))))))..	chr11:118962020-118962270(+)$1	1	129	138	14.8571
((.((((((	chr12:6687519-6687755(-)$1	1	5	14	11.8214
......(((	chr17:58378900-58379161(-)$1	1	2	11	12.5357
))))))..)	chr19:47233887-47234167(-)$1	1	140	149	12.3571
..)))))).	chr8:48798542-48798797(-)$1	1	236	245	10.6607
(((((((((	chr17:80841953-80842171(+)$1	1	103	112	10.9285
)))))).))	chr16:87741515-87741781(-)$1	1	209	218	12.8035
)..)))))(	chr7:12381665-12381879(-)$1	1	120	129	10.6607
(.......)	chr19:1046489-1046748(+)$1	1	56	65	11.8214
..((((..(	chr1:6697157-6697462(-)$1	1	124	133	12.0000
..)))))..	chr17:27235695-27235965(-)$1	1	179	188	10.6607
).)))))..	chr5:134147326-134147565(+)$1	1	195	204	11.6428
.)))))...	chrX:153994528-153994769(+)$1	1	65	74	11.2857
.(((.((((	chr19:55607976-55608221(-)$1	1	134	143	11.3750
(((((((((	chr1:19474956-19475211(-)$1	1	41	50	11.2857
.))))).))	chr1:1248319-1248543(-)$1	1	102	111	13.6071
)..))))..	chr1:12304315-12304592(+)$1	1	118	127	10.8392
.).)))).(	chr10:103577566-103577807(-)$1	1	52	61	11.1964
..))))(((	chr19:1615588-1615827(-)$1	1	48	57	14.6785
..))))..)	chr17:42157419-42157648(-)$1	1	32	41	10.7500
(.(((....	chr17:79603841-79604110(-)$1	1	22	31	18.3392
.(((....(	chr14:102492902-102493142(+)$1	1	56	65	12.0000
((.(((...	chr9:138829992-138830199(-)$1	1	32	41	12.3571
.((.(((((	chr3:48576579-48576842(-)$1	1	30	39	11.3750
(.(((.(.(	chr21:47635054-47635307(-)$1	1	154	163	11.4642

#PSSM
A : 0.64	G : 0.17	C : 0.10	U : 0.03	a : 0.03	
A : 0.75	G : 0.10	U : 0.07	C : 0.05	a : 0.01	
G : 0.87	A : 0.05	U : 0.05	g : 0.01	
C : 0.75	G : 0.10	A : 0.07	U : 0.05	c : 0.01	
U : 0.78	A : 0.07	G : 0.07	C : 0.05	u : 0.01	
G : 0.94	C : 0.01	U : 0.01	g : 0.01	
G : 0.71	A : 0.12	C : 0.08	U : 0.05	g : 0.01	
A : 0.87	U : 0.07	G : 0.03	a : 0.01	
G : 0.75	A : 0.08	C : 0.07	U : 0.07	g : 0.01	

#score	697.0000000000009
#seq	56
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_CDS_m2_run1.nuc.txt

#NT
gaagaagaaaacuaagaagaucaaag	chr6:44218157-44218392(+)$1	235	16	42	32.4000
gaggaaaaagaagaggaggaggaaga	chrX:76907530-76907929(-)$1	399	107	133	34.9000
GAAGAAGAUAGUGAAGAUGAGGAAAU	chr2:232327813-232328042(-)$1	229	69	95	31.6000
GAAGCAGAAGAAGCUGAGGAUGAAGA	chr10:70532661-70532958(+)$1	297	164	190	36.0000
CAAGAAGAAGAAAGUGAAGAUGAAGA	chr3:142761871-142762106(+)$1	235	88	114	35.6000
GAAAAAGAAGAAAAAGAAGAAGCAAG	chr2:153528872-153529116(-)$1	244	37	63	33.9000
GAAGAUGAGAAAAAAGAUGAAGAAAA	chr12:76449835-76450042(-)$1	207	128	154	37.0000
GUAGAAGAUAAAGAGGAAGAAGAUGU	chr6:7303677-7303974(-)$1	297	104	130	31.4000
caagaagaagaagaagaagauuaagg	chr14:102551104-102551317(-)$1	213	137	163	40.3000
GAAAAAGCGAAAGAAAAGCAAGAAGA	chr2:170487368-170487599(+)$1	231	102	128	27.7000
ggauaagaagaagaaaacuaagaaga	chr6:44218005-44218223(+)$1	218	162	188	29.9000
gaagaagaugaagaugaugaugaagg	chr9:131456196-131456417(+)$1	221	86	112	43.1000
gaugaggaagaugaagaggaugagga	chr13:31035379-31035665(-)$1	286	91	117	32.7000
gaagaaauggaggaugagcaagaaag	chr11:35684969-35685315(+)$1	346	80	106	25.1000
gaggaagauaaagaugaugaagaaaa	chr6:44218090-44218302(+)$1	212	3	29	37.1000
agagaagauggaaaagaagaugaagg	chrX:80370056-80370379(-)$1	323	85	111	32.6000
GAAGCUAUUGAAGAUGAUGAUGAUGA	chr12:76444236-76444452(-)$1	216	115	141	25.5000
CAAGAAGAAGAAAGUGAAGAUGAAGA	chr3:142761856-142762071(+)$1	215	103	129	35.6000
gaugaugaaggagaagaugauuaaga	chr9:100777607-100777815(+)$1	208	82	108	34.8000
caagaagaagaagaagaagauuaagg	chr14:102551064-102551304(-)$1	240	124	150	40.3000
gaagaagaagaagaaAAGGGGUAAAA	chr2:203167542-203167833(+)$1	291	150	176	33.8000
gaagaagagaaaaagaagcaggaaga	chr14:102549270-102549474(-)$1	204	11	37	29.5000
gaugaugaaggagaagaugauuaaga	chr9:100777578-100777790(+)$1	212	111	137	34.8000
gaaaaagaagaaaaagaaaaaaaaga	chr2:203168007-203168252(+)$1	245	109	135	34.3000
GACGAGGAGGAAGAAGAAGAAGAGGA	chr5:180687423-180687722(-)$1	299	271	297	34.9000
gaagaugaugaagaugaugaugauga	chr8:124381990-124382291(-)$1	301	77	103	37.9000
gaagaagaagaagaggaggaugagga	chr17:4575279-4575668(-)$1	389	212	238	40.6000
CUGGAAGAGGAAGAAGAGCAUGAAUG	chr5:138700152-138700465(+)$1	313	154	180	27.6000
gaaggaaaagaagaaaaagaaaaagC	chr18:9516857-9517167(+)$1	310	229	255	29.8000
GGAGAAGAUGAAAAUGAGGAUGAAGA	chr8:17869076-17869326(+)$1	250	143	169	38.3000
caagaagaagaagaagaagauuaagg	chr14:102551117-102551354(-)$1	237	174	200	40.3000
AAAGAACUUGAAAAAGAACAAGAACA	chr1:171501695-171502013(+)$1	318	86	112	26.5000
gaagaagaagaagaaAAGGGGUAAAA	chr2:203167633-203167881(+)$1	248	59	85	33.8000
GAAGAUGAGAAAAAAGAUGAAGAAAA	chr12:76449796-76450016(-)$1	220	102	128	37.0000
gaggaggaggaagaaaaugaugacca	chrX:64737892-64738188(-)$1	296	132	158	29.3000
gauggagacaaugaggaugaugaaga	chr7:11022475-11022755(+)$1	280	107	133	28.2000
AAUGAAGAUGAAGAAGAGGAAGGAAA	chr2:55791391-55791722(-)$1	331	165	191	33.5000
gaacaugaugaacaugaugaaAAUGG	chr2:170667714-170667932(+)$1	218	85	111	25.8000
ggagaagaagaagaagaagaaaaaAG	chr9:139734527-139734742(+)$1	215	103	129	38.3000
GAAGAAUUAGAAAAAGAAGAAGAGCU	chr10:1058308-1058605(+)$1	297	102	128	28.4000
ggagaagaagaagaagaagaaaaaAG	chr9:139734542-139734764(+)$1	222	88	114	38.3000
GAAGAAGAUAGUGAAGAUGAGGAAAU	chr2:232327810-232328013(-)$1	203	40	66	31.6000
gaagaagaugaagaugaugaugaagg	chr9:131456088-131456311(+)$1	223	194	220	43.1000
GAAAAAGAGAAAGAAGAAAAAAAAUU	chr3:160133982-160134251(+)$1	269	137	163	28.2000
gaagaagaaaacuaagaagaucaaag	chr6:44218102-44218332(+)$1	230	71	97	32.4000
AAAGAAGAUAAAUAUGAGGAAGAAAU	chr1:154143046-154143288(-)$1	242	110	136	31.7000
GCAGAAGAUGAAGAAAAGAGUGAAAA	chr7:156743279-156743520(+)$1	241	82	108	29.6000
AAAGAAGCUGAAAGAGAAGAAGAAAG	chr14:73572803-73573092(+)$1	289	151	177	30.0000
gaugaugaaggagaagaugauuaaga	chr9:100777590-100777803(+)$1	213	99	125	34.8000

#otherMatches

#Struct PSSM
c::dddd[ccc[ffffffccc[bb[b	chr15:69072327-69072582(-)$1	255	136	162	33.2000
:::::::::DDDD:::::ffffff[a	chr6:44218157-44218392(+)$1	235	16	42	32.4000
ddd333ccc]bb22eeeee22ccc]b	chrX:76907530-76907929(-)$1	399	107	133	34.9000
b::::::::GGGGGGGRRRRRRRRRE	chr2:232327813-232328042(-)$1	229	69	95	31.6000
EEEEcccooooooccc:ggggggg""	chr10:70532661-70532958(+)$1	297	164	190	36.0000
ffff]bbdddd]ccc::CCC{CCCOO	chr3:142761871-142762106(+)$1	235	88	114	35.6000
GGGGG::::::::::::EEEEEeeee	chr2:153528872-153529116(-)$1	244	37	63	33.9000
d]dddd]ccc55555ggggggg::::	chr12:76449835-76450042(-)$1	207	128	154	37.0000
oooodddd]ffffff]bb]dddd:EE	chr6:7303677-7303974(-)$1	297	104	130	31.4000
^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:102551104-102551317(-)$1	213	137	163	40.3000
dddeeeee''''''''ddddgggggg	chr2:170487368-170487599(+)$1	231	102	128	27.7000
::::::::::::::::::::::::ff	chr6:44218005-44218223(+)$1	218	162	188	29.9000
::::::::::::::::::::::::cc	chr9:131456196-131456417(+)$1	221	86	112	43.1000
b[bb++++++++++++++++bb[a[c	chr13:31035379-31035665(-)$1	286	91	117	32.7000
::::::::::CCC{BBKKDDDD{DDD	chr11:35684969-35685315(+)$1	346	80	106	25.1000
:CCC:::::::::::::::::::::f	chr6:44218090-44218302(+)$1	212	3	29	37.1000
:::::::::::::::::::IIIIIII	chrX:80370056-80370379(-)$1	323	85	111	32.6000
nnnnccc]eeeeeeeeee22dddd22	chr12:76444236-76444452(-)$1	216	115	141	25.5000
ffff]bbdddd]dddd:dddd"""cc	chr3:142761856-142762071(+)$1	215	103	129	35.6000
ee!!dddd[a[bb+++++++++++dd	chr9:100777607-100777815(+)$1	208	82	108	34.8000
^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:102551064-102551304(-)$1	240	124	150	40.3000
e]ccc::::::::::::::CCC::::	chr2:203167542-203167833(+)$1	291	150	176	33.8000
G::::::::::::::::eeeee((((	chr14:102549270-102549474(-)$1	204	11	37	29.5000
c[a[bb"""bbyyyyyyyyyyyyyyy	chr9:100777578-100777790(+)$1	212	111	137	34.8000
eee22bb22bb22eeeee666666gg	chr2:203168007-203168252(+)$1	245	109	135	34.3000
22a:::::::::::::::::::::::	chr5:180687423-180687722(-)$1	299	271	297	34.9000
[a!!bb[bbmmmmbb]bb22a]bb22	chr8:124381990-124382291(-)$1	301	77	103	37.9000
BVVVVVVVVVVVVVEEEEEKKCCCKK	chr17:4575279-4575668(-)$1	389	212	238	40.6000
qffffff:BB}CCC:dddd!!eeeee	chr5:138700152-138700465(+)$1	313	154	180	27.6000
::::::::::::::::::::::::CC	chr18:9516857-9517167(+)$1	310	229	255	29.8000
:::::::::::::::dddd!!dddd"	chr8:17869076-17869326(+)$1	250	143	169	38.3000
^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:102551117-102551354(-)$1	237	174	200	40.3000
::::::ddddqqqqqqqqdddd::::	chr1:171501695-171502013(+)$1	318	86	112	26.5000
]a::::::::::EEEEEKKEEEEEKK	chr2:203167633-203167881(+)$1	248	59	85	33.8000
d]dddd]ccc55555ggggggg22dd	chr12:76449796-76450016(-)$1	220	102	128	37.0000
ZZDDDDYYBB|||||||EEEEE}DDD	chrX:64737892-64738188(-)$1	296	132	158	29.3000
4444eeeee:::::::::::::::::	chr7:11022475-11022755(+)$1	280	107	133	28.2000
DDD}HHHHHHHH:::::::::fffff	chr2:55791391-55791722(-)$1	331	165	191	33.5000
"""ccc[bbmmmmbb]ccc333bb]b	chr2:170667714-170667932(+)$1	218	85	111	25.8000
mccc::::::::::::::::::::::	chr9:139734527-139734742(+)$1	215	103	129	38.3000
dd::::::::::::::::::::eeee	chr10:1058308-1058605(+)$1	297	102	128	28.4000
^^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:139734542-139734764(+)$1	222	88	114	38.3000
b::::::::GGGGGGGRRRRRRRRRE	chr2:232327810-232328013(-)$1	203	40	66	31.6000
DDDYYFFFFFF:::::::::::::::	chr9:131456088-131456311(+)$1	223	194	220	43.1000
uuuuuuccc:::::::::::::::::	chr3:160133982-160134251(+)$1	269	137	163	28.2000
::::::::::::::::::ffffff[a	chr6:44218102-44218332(+)$1	230	71	97	32.4000
nnccc:::::::ccc[bb!!ddddpp	chr1:154143046-154143288(-)$1	242	110	136	31.7000
bbb(((((((((bb"""ddddmmmmd	chr7:156743279-156743520(+)$1	241	82	108	29.6000
666666iiiiiiiii:::::::::::	chr14:73572803-73573092(+)$1	289	151	177	30.0000
ee!!dddd[a[bb+++++++++++dd	chr9:100777590-100777803(+)$1	213	99	125	34.8000

#DB
)..((((.(((.(((((((((.((.(	chr15:69072327-69072582(-)$1	1	136	162	33.2000
.........((((.....((((((.(	chr6:44218157-44218392(+)$1	1	16	42	32.4000
)))...))).))..)))))..))).)	chrX:76907530-76907929(-)$1	1	107	133	34.9000
)........(((((((.........(	chr2:232327813-232328042(-)$1	1	69	95	31.6000
(((((((......))).(((((((..	chr10:70532661-70532958(+)$1	1	164	190	36.0000
)))).)))))).)))..(((.(((..	chr3:142761871-142762106(+)$1	1	88	114	35.6000
(((((............(((((((((	chr2:153528872-153529116(-)$1	1	37	63	33.9000
).)))).))).....)))))))....	chr12:76449835-76450042(-)$1	1	128	154	37.0000
....)))).)))))).)).)))).((	chr6:7303677-7303974(-)$1	1	104	130	31.4000
..........................	chr14:102551104-102551317(-)$1	1	137	163	40.3000
((((((((........((((((((((	chr2:170487368-170487599(+)$1	1	102	128	27.7000
........................((	chr6:44218005-44218223(+)$1	1	162	188	29.9000
........................((	chr9:131456196-131456417(+)$1	1	86	112	43.1000
(.((................((.(.(	chr13:31035379-31035665(-)$1	1	91	117	32.7000
..........(((.((..((((.(((	chr11:35684969-35685315(+)$1	1	80	106	25.1000
.(((.....................(	chr6:44218090-44218302(+)$1	1	3	29	37.1000
...................(((((((	chrX:80370056-80370379(-)$1	1	85	111	32.6000
....))).))))))))))..))))..	chr12:76444236-76444452(-)$1	1	115	141	25.5000
)))).)))))).)))).((((...((	chr3:142761856-142762071(+)$1	1	103	129	35.6000
((..((((.(.((...........((	chr9:100777607-100777815(+)$1	1	82	108	34.8000
..........................	chr14:102551064-102551304(-)$1	1	124	150	40.3000
).)))..............(((....	chr2:203167542-203167833(+)$1	1	150	176	33.8000
(................(((((....	chr14:102549270-102549474(-)$1	1	11	37	29.5000
(.(.((...((...............	chr9:100777578-100777790(+)$1	1	111	137	34.8000
)))..))..))..)))))......))	chr2:203168007-203168252(+)$1	1	109	135	34.3000
..).......................	chr5:180687423-180687722(-)$1	1	271	297	34.9000
.(..((.((....)).))..).))..	chr8:124381990-124382291(-)$1	1	77	103	37.9000
(.............(((((..(((..	chr17:4575279-4575668(-)$1	1	212	238	40.6000
.)))))).)).))).((((..(((((	chr5:138700152-138700465(+)$1	1	154	180	27.6000
........................))	chr18:9516857-9517167(+)$1	1	229	255	29.8000
...............((((..((((.	chr8:17869076-17869326(+)$1	1	143	169	38.3000
..........................	chr14:102551117-102551354(-)$1	1	174	200	40.3000
......((((........))))....	chr1:171501695-171502013(+)$1	1	86	112	26.5000
.)..........(((((..(((((..	chr2:203167633-203167881(+)$1	1	59	85	33.8000
).)))).))).....)))))))..))	chr12:76449796-76450016(-)$1	1	102	128	37.0000
..))))..)).......))))).)))	chrX:64737892-64738188(-)$1	1	132	158	29.3000
....))))).................	chr7:11022475-11022755(+)$1	1	107	133	28.2000
))).)))))))).........(((((	chr2:55791391-55791722(-)$1	1	165	191	33.5000
...(((.((....)).)))...)).)	chr2:170667714-170667932(+)$1	1	85	111	25.8000
.)))......................	chr9:139734527-139734742(+)$1	1	103	129	38.3000
))....................((((	chr10:1058308-1058605(+)$1	1	102	128	28.4000
..........................	chr9:139734542-139734764(+)$1	1	88	114	38.3000
)........(((((((.........(	chr2:232327810-232328013(-)$1	1	40	66	31.6000
)))..))))))...............	chr9:131456088-131456311(+)$1	1	194	220	43.1000
......))).................	chr3:160133982-160134251(+)$1	1	137	163	28.2000
..................((((((.(	chr6:44218102-44218332(+)$1	1	71	97	32.4000
..))).......(((.((..((((..	chr1:154143046-154143288(-)$1	1	110	136	31.7000
(((.........((...((((....)	chr7:156743279-156743520(+)$1	1	82	108	29.6000
......)))))))))...........	chr14:73572803-73573092(+)$1	1	151	177	30.0000
((..((((.(.((...........((	chr9:100777590-100777803(+)$1	1	99	125	34.8000

#PSSM
g : 0.48	G : 0.30	A : 0.08	C : 0.06	c : 0.06	a : 0.02	
a : 0.48	A : 0.36	g : 0.08	U : 0.04	G : 0.02	C : 0.02	
a : 0.40	A : 0.38	u : 0.10	g : 0.06	C : 0.02	G : 0.02	U : 0.02	
g : 0.50	G : 0.38	A : 0.06	u : 0.02	a : 0.02	c : 0.02	
a : 0.52	A : 0.40	C : 0.04	g : 0.04	
a : 0.42	A : 0.34	u : 0.10	U : 0.08	g : 0.04	G : 0.02	
g : 0.50	G : 0.38	a : 0.06	A : 0.02	C : 0.02	U : 0.02	
a : 0.54	A : 0.34	U : 0.06	C : 0.04	u : 0.02	
a : 0.36	U : 0.19	G : 0.14	u : 0.12	A : 0.10	g : 0.06	c : 0.02	
g : 0.46	G : 0.27	A : 0.16	a : 0.10	
a : 0.48	A : 0.38	g : 0.08	G : 0.06	
a : 0.46	A : 0.40	c : 0.04	U : 0.04	u : 0.04	g : 0.02	
g : 0.44	G : 0.23	A : 0.18	a : 0.06	u : 0.04	c : 0.02	U : 0.02	
a : 0.56	A : 0.36	G : 0.06	C : 0.02	
a : 0.36	A : 0.30	U : 0.12	u : 0.12	g : 0.08	G : 0.02	
g : 0.44	G : 0.40	A : 0.08	a : 0.08	
a : 0.52	A : 0.48	
a : 0.19	u : 0.19	G : 0.18	A : 0.18	U : 0.12	g : 0.10	c : 0.02	
g : 0.44	G : 0.38	C : 0.06	c : 0.04	A : 0.04	u : 0.02	a : 0.02	
a : 0.52	A : 0.42	G : 0.06	
u : 0.32	A : 0.23	U : 0.16	a : 0.16	G : 0.08	g : 0.04	
G : 0.42	g : 0.25	u : 0.12	a : 0.08	c : 0.04	U : 0.04	A : 0.04	
a : 0.50	A : 0.46	C : 0.02	G : 0.02	
a : 0.42	A : 0.38	U : 0.06	g : 0.04	G : 0.04	C : 0.02	u : 0.02	c : 0.02	
g : 0.36	A : 0.25	G : 0.18	a : 0.08	U : 0.06	C : 0.04	c : 0.02	
A : 0.30	a : 0.25	g : 0.18	U : 0.12	G : 0.12	C : 0.02	

#score	1673.000000000002
#seq	50
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_UTR_m1_run2.nuc.txt

#NT
CUUU	chr4:74285931-74286138(+)$1	207	27	31	12.0000
CUUU	chr13:24248749-24249015(+)$1	266	41	45	12.0000
CUUU	chr13:30086726-30086975(-)$1	249	83	87	12.0000
CUUU	chr20:55093741-55093988(+)$1	247	215	219	12.0000
CUUU	chr8:99053957-99054174(-)$1	217	148	152	12.0000
CUUU	chr1:65694019-65694293(+)$1	274	206	210	12.0000
CUUU	chr6:7883381-7883599(-)$1	218	78	82	12.0000
CUUU	chr2:69550559-69550807(-)$1	248	239	243	12.0000
CUUU	chr16:9012863-9013097(-)$1	234	94	98	12.0000
CUUU	chr16:18544341-18544604(-)$1	263	29	33	12.0000
CUUU	chr11:62406400-62406629(-)$1	229	15	19	12.0000
CUUU	chr17:74676719-74676990(-)$1	271	3	7	12.0000
CUUU	chr11:118920177-118920429(-)$1	252	51	55	12.0000
CUUU	chr17:56568034-56568302(-)$1	268	116	120	12.0000
CUUU	chr6:31321680-31321951(-)$1	271	90	94	12.0000
CUUU	chr11:129990499-129990706(+)$1	207	92	96	12.0000
CUUU	chr6:13615844-13616091(+)$1	247	46	50	12.0000
CUUU	chr1:156712872-156713129(-)$1	257	16	20	12.0000
CUUU	chr17:37884369-37884661(+)$1	292	143	147	12.0000
CUUU	chr5:102364525-102364798(+)$1	273	29	33	12.0000
CUUU	chr17:7076701-7077015(-)$1	314	32	36	12.0000
CUUU	chr16:18569004-18569213(-)$1	209	92	96	12.0000
CUUU	chr9:5786999-5787247(-)$1	248	91	95	12.0000
CUUU	chr19:18288617-18288896(+)$1	279	159	163	12.0000
cuuu	chr20:45363331-45363610(+)$1	279	136	140	12.0000
CUUU	chr3:195803847-195804094(-)$1	247	69	73	12.0000
CUUU	chr19:49119345-49119559(-)$1	214	167	171	12.0000
CUUU	chr3:119232395-119232654(+)$1	259	13	17	12.0000
CUUU	chr12:110771815-110772048(+)$1	233	97	101	12.0000
CUUU	chr9:74324136-74324394(-)$1	258	18	22	12.0000
CUUU	chr1:92182084-92182364(-)$1	280	82	86	12.0000
CUUU	chr16:56465230-56465507(-)$1	277	65	69	12.0000
CUUU	chr6:34556278-34556536(-)$1	258	186	190	12.0000
CUUU	chr2:175087698-175087987(-)$1	289	85	89	12.0000
CUUU	chr20:43995851-43996123(+)$1	272	143	147	12.0000
CUUU	chr10:105360360-105360629(-)$1	269	30	34	12.0000
CUUU	chr16:14530289-14530521(-)$1	232	125	129	12.0000
CUUU	chr22:32894326-32894597(+)$1	271	64	68	12.0000
CUUU	chr6:108192479-108192748(-)$1	269	39	43	12.0000
CUUU	chr17:61823221-61823447(-)$1	226	115	119	12.0000
CUUU	chr21:46269716-46269970(-)$1	254	145	149	12.0000
CUUU	chr17:34325214-34325454(-)$1	240	11	15	12.0000
CUUU	chr6:150047628-150047910(-)$1	282	106	110	12.0000
CUUU	chr19:8530112-8530436(+)$1	324	77	81	12.0000
CUUU	chr1:160966843-160967101(-)$1	258	25	29	12.0000
CUUU	chr14:75598502-75598755(-)$1	253	8	12	12.0000
CUUU	chr6:3289944-3290202(-)$1	258	94	98	12.0000
CUUU	chr3:184042597-184042808(+)$1	211	34	38	12.0000
CUUU	chr13:113977332-113977600(+)$1	268	98	102	12.0000
CUUU	chr16:23073891-23074143(-)$1	252	164	168	12.0000
CUUU	chr6:131908582-131908880(-)$1	298	42	46	12.0000
CUUU	chr11:86659191-86659421(-)$1	230	89	93	12.0000
CUUU	chr12:76443434-76443641(-)$1	207	68	72	12.0000
CUUU	chr8:22278883-22279124(+)$1	241	7	11	12.0000
CUUU	chr4:69795073-69795320(-)$1	247	238	242	12.0000
CUUU	chr3:184038371-184038598(+)$1	227	32	36	12.0000
CUUU	chr1:220870877-220871131(+)$1	254	110	114	12.0000
CUUU	chr9:5786984-5787194(-)$1	210	38	42	12.0000
CUUU	chr11:65421531-65421758(-)$1	227	11	15	12.0000
CUUU	chr13:77730142-77730438(-)$1	296	142	146	12.0000
CUUU	chr8:124346401-124346638(-)$1	237	103	107	12.0000
CUUU	chr6:142726768-142726987(+)$1	219	168	172	12.0000
CUUU	chr9:111781997-111782266(-)$1	269	54	58	12.0000
CUUU	chr8:99054777-99055007(-)$1	230	140	144	12.0000
CUUU	chr6:34556388-34556641(-)$1	253	101	105	12.0000
CUUU	chr12:66359611-66359843(+)$1	232	116	120	12.0000
CUUU	chr17:6588026-6588263(-)$1	237	2	6	12.0000
CUUU	chr12:51112639-51112892(+)$1	253	75	79	12.0000
CUUU	chr1:55317008-55317230(-)$1	222	197	201	12.0000
CUUU	chr1:55316997-55317208(-)$1	211	175	179	12.0000
CUUU	chr6:56350098-56350344(-)$1	246	63	67	12.0000
CUUU	chr17:1675174-1675413(+)$1	239	10	14	12.0000
CUUU	chr6:159187627-159187914(-)$1	287	37	41	12.0000
CUUU	chr1:11083392-11083597(+)$1	205	21	25	12.0000
CUUU	chr20:3629047-3629291(+)$1	244	146	150	12.0000
CUUU	chr1:230838235-230838459(-)$1	224	197	201	12.0000
CUUU	chr11:130014248-130014495(+)$1	247	184	188	12.0000
CUUU	chr10:51580510-51580747(+)$1	237	1	5	12.0000
CUUU	chr4:6643756-6644014(+)$1	258	7	11	12.0000
CUUU	chr4:74285870-74286073(+)$1	203	7	11	12.0000
CUUU	chr4:74285251-74285457(+)$1	206	49	53	12.0000
CUUU	chr11:4159575-4159831(+)$1	256	129	133	12.0000
CUUU	chr12:112460557-112460783(+)$1	226	182	186	12.0000
CUUU	chr10:1086226-1086598(-)$1	372	87	91	12.0000
cuuu	chr6:34842541-34842787(+)$1	246	5	9	12.0000
CUUU	chr7:137560364-137560616(-)$1	252	87	91	12.0000
CUUU	chr20:2448225-2448470(-)$1	245	160	164	12.0000
CUUU	chr15:59149563-59149820(+)$1	257	206	210	12.0000

#otherMatches

#Struct PSSM
::::	chr4:74280664-74280870(+)$1	206	12	16	12.0000
HHHH	chr4:74285931-74286138(+)$1	207	27	31	12.0000
&&&i	chr13:24248749-24249015(+)$1	266	41	45	12.0000
d:::	chr13:30086726-30086975(-)$1	249	83	87	12.0000
gggg	chr20:55093741-55093988(+)$1	247	215	219	12.0000
iiii	chr8:99053957-99054174(-)$1	217	148	152	12.0000
"eee	chr1:65694019-65694293(+)$1	274	206	210	12.0000
====	chr6:7883381-7883599(-)$1	218	78	82	12.0000
cmmm	chr2:69550559-69550807(-)$1	248	239	243	12.0000
ddll	chr16:9012863-9013097(-)$1	234	94	98	12.0000
csss	chr16:18544341-18544604(-)$1	263	29	33	12.0000
::::	chr11:62406400-62406629(-)$1	229	15	19	12.0000
::::	chr17:74676719-74676990(-)$1	271	3	7	12.0000
hhhh	chr11:118920177-118920429(-)$1	252	51	55	12.0000
c:::	chr17:56568034-56568302(-)$1	268	116	120	12.0000
iiii	chr6:31321680-31321951(-)$1	271	90	94	12.0000
b999	chr11:129990499-129990706(+)$1	207	92	96	12.0000
:hhh	chr6:13615844-13616091(+)$1	247	46	50	12.0000
::::	chr1:156712872-156713129(-)$1	257	16	20	12.0000
ggmm	chr17:37884369-37884661(+)$1	292	143	147	12.0000
ccDD	chr5:102364525-102364798(+)$1	273	29	33	12.0000
ee::	chr17:7076701-7077015(-)$1	314	32	36	12.0000
++++	chr16:18569004-18569213(-)$1	209	92	96	12.0000
c!!a	chr9:5786999-5787247(-)$1	248	91	95	12.0000
c%%%	chr19:18288617-18288896(+)$1	279	159	163	12.0000
c!!b	chr20:45363331-45363610(+)$1	279	136	140	12.0000
HHH:	chr3:195803847-195804094(-)$1	247	69	73	12.0000
oooo	chr19:49119345-49119559(-)$1	214	167	171	12.0000
hhhh	chr3:119232395-119232654(+)$1	259	13	17	12.0000
cfff	chr12:110771815-110772048(+)$1	233	97	101	12.0000
ffff	chr9:74324136-74324394(-)$1	258	18	22	12.0000
CEEE	chr1:92182084-92182364(-)$1	280	82	86	12.0000
::::	chr16:56465230-56465507(-)$1	277	65	69	12.0000
eee:	chr6:34556278-34556536(-)$1	258	186	190	12.0000
F:::	chr2:175087698-175087987(-)$1	289	85	89	12.0000
hhh:	chr20:43995851-43996123(+)$1	272	143	147	12.0000
^^^^	chr10:105360360-105360629(-)$1	269	30	34	12.0000
====	chr16:14530289-14530521(-)$1	232	125	129	12.0000
nnnb	chr22:32894326-32894597(+)$1	271	64	68	12.0000
mmee	chr6:108192479-108192748(-)$1	269	39	43	12.0000
xxxx	chr17:61823221-61823447(-)$1	226	115	119	12.0000
bbee	chr21:46269716-46269970(-)$1	254	145	149	12.0000
FFFC	chr17:34325214-34325454(-)$1	240	11	15	12.0000
dd::	chr6:150047628-150047910(-)$1	282	106	110	12.0000
====	chr19:8530112-8530436(+)$1	324	77	81	12.0000
ccc=	chr1:160966843-160967101(-)$1	258	25	29	12.0000
GGII	chr14:75598502-75598755(-)$1	253	8	12	12.0000
GGGG	chr6:3289944-3290202(-)$1	258	94	98	12.0000
hhhh	chr3:184042597-184042808(+)$1	211	34	38	12.0000
ee$$	chr13:113977332-113977600(+)$1	268	98	102	12.0000
::hh	chr16:23073891-23074143(-)$1	252	164	168	12.0000
mmmc	chr6:131908582-131908880(-)$1	298	42	46	12.0000
dooo	chr11:86659191-86659421(-)$1	230	89	93	12.0000
ffff	chr12:76443434-76443641(-)$1	207	68	72	12.0000
CC::	chr8:22278883-22279124(+)$1	241	7	11	12.0000
iiie	chr4:69795073-69795320(-)$1	247	238	242	12.0000
c888	chr3:184038371-184038598(+)$1	227	32	36	12.0000
ccc]	chr1:220870877-220871131(+)$1	254	110	114	12.0000
nnee	chr9:5786984-5787194(-)$1	210	38	42	12.0000
a$$$	chr11:65421531-65421758(-)$1	227	11	15	12.0000
cc22	chr13:77730142-77730438(-)$1	296	142	146	12.0000
cccl	chr8:124346401-124346638(-)$1	237	103	107	12.0000
ttff	chr6:142726768-142726987(+)$1	219	168	172	12.0000
wwww	chr9:111781997-111782266(-)$1	269	54	58	12.0000
iiii	chr8:99054777-99055007(-)$1	230	140	144	12.0000
eeee	chr6:34556388-34556641(-)$1	253	101	105	12.0000
e]hh	chr12:66359611-66359843(+)$1	232	116	120	12.0000
::::	chr17:6588026-6588263(-)$1	237	2	6	12.0000
::::	chr12:51112639-51112892(+)$1	253	75	79	12.0000
::::	chr1:55317008-55317230(-)$1	222	197	201	12.0000
~EEE	chr1:55316997-55317208(-)$1	211	175	179	12.0000
hhhh	chr6:56350098-56350344(-)$1	246	63	67	12.0000
HHHH	chr17:1675174-1675413(+)$1	239	10	14	12.0000
DDMM	chr6:159187627-159187914(-)$1	287	37	41	12.0000
DD::	chr1:11083392-11083597(+)$1	205	21	25	12.0000
yyyy	chr20:3629047-3629291(+)$1	244	146	150	12.0000
::::	chr1:230838235-230838459(-)$1	224	197	201	12.0000
meee	chr11:130014248-130014495(+)$1	247	184	188	12.0000
::::	chr10:51580510-51580747(+)$1	237	1	5	12.0000
F:::	chr4:6643756-6644014(+)$1	258	7	11	12.0000
::::	chr4:74285870-74286073(+)$1	203	7	11	12.0000
gggg	chr4:74285251-74285457(+)$1	206	49	53	12.0000
bb22	chr11:4159575-4159831(+)$1	256	129	133	12.0000
eeee	chr12:112460557-112460783(+)$1	226	182	186	12.0000
ssss	chr10:1086226-1086598(-)$1	372	87	91	12.0000
HHHH	chr6:34842541-34842787(+)$1	246	5	9	12.0000
CCC{	chr7:137560364-137560616(-)$1	252	87	91	12.0000
ffff	chr20:2448225-2448470(-)$1	245	160	164	12.0000
}DDD	chr15:59149563-59149820(+)$1	257	206	210	12.0000

#DB
....	chr4:74280664-74280870(+)$1	1	12	16	12.0000
((((	chr4:74285931-74286138(+)$1	1	27	31	12.0000
...(	chr13:24248749-24249015(+)$1	1	41	45	12.0000
)...	chr13:30086726-30086975(-)$1	1	83	87	12.0000
))))	chr20:55093741-55093988(+)$1	1	215	219	12.0000
))))	chr8:99053957-99054174(-)$1	1	148	152	12.0000
.(((	chr1:65694019-65694293(+)$1	1	206	210	12.0000
((((	chr6:7883381-7883599(-)$1	1	78	82	12.0000
(...	chr2:69550559-69550807(-)$1	1	239	243	12.0000
((..	chr16:9012863-9013097(-)$1	1	94	98	12.0000
(...	chr16:18544341-18544604(-)$1	1	29	33	12.0000
....	chr11:62406400-62406629(-)$1	1	15	19	12.0000
....	chr17:74676719-74676990(-)$1	1	3	7	12.0000
))))	chr11:118920177-118920429(-)$1	1	51	55	12.0000
)...	chr17:56568034-56568302(-)$1	1	116	120	12.0000
((((	chr6:31321680-31321951(-)$1	1	90	94	12.0000
)...	chr11:129990499-129990706(+)$1	1	92	96	12.0000
.(((	chr6:13615844-13616091(+)$1	1	46	50	12.0000
....	chr1:156712872-156713129(-)$1	1	16	20	12.0000
((..	chr17:37884369-37884661(+)$1	1	143	147	12.0000
))((	chr5:102364525-102364798(+)$1	1	29	33	12.0000
))..	chr17:7076701-7077015(-)$1	1	32	36	12.0000
....	chr16:18569004-18569213(-)$1	1	92	96	12.0000
(..(	chr9:5786999-5787247(-)$1	1	91	95	12.0000
(...	chr19:18288617-18288896(+)$1	1	159	163	12.0000
(..(	chr20:45363331-45363610(+)$1	1	136	140	12.0000
(((.	chr3:195803847-195804094(-)$1	1	69	73	12.0000
....	chr19:49119345-49119559(-)$1	1	167	171	12.0000
((((	chr3:119232395-119232654(+)$1	1	13	17	12.0000
))))	chr12:110771815-110772048(+)$1	1	97	101	12.0000
((((	chr9:74324136-74324394(-)$1	1	18	22	12.0000
)(((	chr1:92182084-92182364(-)$1	1	82	86	12.0000
....	chr16:56465230-56465507(-)$1	1	65	69	12.0000
))).	chr6:34556278-34556536(-)$1	1	186	190	12.0000
(...	chr2:175087698-175087987(-)$1	1	85	89	12.0000
))).	chr20:43995851-43996123(+)$1	1	143	147	12.0000
....	chr10:105360360-105360629(-)$1	1	30	34	12.0000
))))	chr16:14530289-14530521(-)$1	1	125	129	12.0000
...)	chr22:32894326-32894597(+)$1	1	64	68	12.0000
..))	chr6:108192479-108192748(-)$1	1	39	43	12.0000
....	chr17:61823221-61823447(-)$1	1	115	119	12.0000
))))	chr21:46269716-46269970(-)$1	1	145	149	12.0000
((((	chr17:34325214-34325454(-)$1	1	11	15	12.0000
))..	chr6:150047628-150047910(-)$1	1	106	110	12.0000
((((	chr19:8530112-8530436(+)$1	1	77	81	12.0000
)))(	chr1:160966843-160967101(-)$1	1	25	29	12.0000
((((	chr14:75598502-75598755(-)$1	1	8	12	12.0000
((((	chr6:3289944-3290202(-)$1	1	94	98	12.0000
))))	chr3:184042597-184042808(+)$1	1	34	38	12.0000
((..	chr13:113977332-113977600(+)$1	1	98	102	12.0000
..((	chr16:23073891-23074143(-)$1	1	164	168	12.0000
...)	chr6:131908582-131908880(-)$1	1	42	46	12.0000
(...	chr11:86659191-86659421(-)$1	1	89	93	12.0000
((((	chr12:76443434-76443641(-)$1	1	68	72	12.0000
((..	chr8:22278883-22279124(+)$1	1	7	11	12.0000
))))	chr4:69795073-69795320(-)$1	1	238	242	12.0000
)...	chr3:184038371-184038598(+)$1	1	32	36	12.0000
))).	chr1:220870877-220871131(+)$1	1	110	114	12.0000
..))	chr9:5786984-5787194(-)$1	1	38	42	12.0000
(...	chr11:65421531-65421758(-)$1	1	11	15	12.0000
))..	chr13:77730142-77730438(-)$1	1	142	146	12.0000
(((.	chr8:124346401-124346638(-)$1	1	103	107	12.0000
..))	chr6:142726768-142726987(+)$1	1	168	172	12.0000
....	chr9:111781997-111782266(-)$1	1	54	58	12.0000
))))	chr8:99054777-99055007(-)$1	1	140	144	12.0000
((((	chr6:34556388-34556641(-)$1	1	101	105	12.0000
).))	chr12:66359611-66359843(+)$1	1	116	120	12.0000
....	chr17:6588026-6588263(-)$1	1	2	6	12.0000
....	chr12:51112639-51112892(+)$1	1	75	79	12.0000
....	chr1:55317008-55317230(-)$1	1	197	201	12.0000
.)))	chr1:55316997-55317208(-)$1	1	175	179	12.0000
((((	chr6:56350098-56350344(-)$1	1	63	67	12.0000
((((	chr17:1675174-1675413(+)$1	1	10	14	12.0000
((..	chr6:159187627-159187914(-)$1	1	37	41	12.0000
((..	chr1:11083392-11083597(+)$1	1	21	25	12.0000
....	chr20:3629047-3629291(+)$1	1	146	150	12.0000
....	chr1:230838235-230838459(-)$1	1	197	201	12.0000
.)))	chr11:130014248-130014495(+)$1	1	184	188	12.0000
....	chr10:51580510-51580747(+)$1	1	1	5	12.0000
(...	chr4:6643756-6644014(+)$1	1	7	11	12.0000
....	chr4:74285870-74286073(+)$1	1	7	11	12.0000
((((	chr4:74285251-74285457(+)$1	1	49	53	12.0000
))..	chr11:4159575-4159831(+)$1	1	129	133	12.0000
))))	chr12:112460557-112460783(+)$1	1	182	186	12.0000
....	chr10:1086226-1086598(-)$1	1	87	91	12.0000
((((	chr6:34842541-34842787(+)$1	1	5	9	12.0000
(((.	chr7:137560364-137560616(-)$1	1	87	91	12.0000
((((	chr20:2448225-2448470(-)$1	1	160	164	12.0000
.)))	chr15:59149563-59149820(+)$1	1	206	210	12.0000

#PSSM
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
U : 0.97	u : 0.02	
U : 0.97	u : 0.02	

#score	1068.0000000000007
#seq	89
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_UTR_m1_run1.nuc.txt

#NT
CAGAAG	chr11:34120831-34121068(+)$1	237	147	153	14.1538
AAGAAG	chr8:80831127-80831459(-)$1	332	222	228	16.2051
AAGAAG	chr15:72499028-72499258(-)$1	230	55	61	16.2051
CAGAAG	chr8:56986215-56986428(-)$1	213	33	39	14.1538
AAGAAG	chr17:37054565-37054856(+)$1	291	180	186	16.2051
AAGAAG	chr16:56501038-56501305(+)$1	267	169	175	16.2051
AAGAAG	chr12:6879233-6879485(+)$1	252	95	101	16.2051
AAGAAG	chr3:184038615-184038865(+)$1	250	44	50	16.2051
AAGAAG	chr16:85840354-85840677(+)$1	323	117	123	16.2051
CAGAAG	chr6:160199702-160199959(+)$1	257	86	92	14.1538
GAGAAG	chr14:24651116-24651376(-)$1	260	28	34	13.6410
CAGAAG	chr17:7481128-7481334(+)$1	206	133	139	14.1538
GAGAAG	chr5:33459830-33460067(+)$1	237	89	95	13.6410
AAGAAG	chr9:35067925-35068156(-)$1	231	150	156	16.2051
AAGAAG	chr14:23945349-23945622(+)$1	273	121	127	16.2051
GAGAAG	chr14:23495289-23495576(-)$1	287	252	258	13.6410
AAGAAG	chr1:11076817-11077137(+)$1	320	33	39	16.2051
AAGAAG	chr17:57728523-57728755(+)$1	232	91	97	16.2051
CAGAAG	chr16:28855639-28855859(-)$1	220	20	26	14.1538
AAGAAG	chr2:198361950-198362216(-)$1	266	245	251	16.2051
AAGAAG	chr17:4862611-4862898(-)$1	287	22	28	16.2051
CAGAAG	chr16:11941470-11941719(-)$1	249	85	91	14.1538
GAGAAG	chr3:184041642-184041862(+)$1	220	57	63	13.6410
AAGAAG	chr14:21550127-21550378(+)$1	251	205	211	16.2051
AAGAAG	chr12:27888308-27888559(+)$1	251	107	113	16.2051
AAGAAG	chr12:57627755-57627993(+)$1	238	148	154	16.2051
CAGAAG	chr2:42530143-42530385(+)$1	242	134	140	14.1538
AAGAAG	chr17:40140684-40140982(-)$1	298	93	99	16.2051
GAGAAG	chr3:184019536-184019833(+)$1	297	44	50	13.6410
CAGAAG	chr16:85838450-85838726(+)$1	276	22	28	14.1538
AAGAAG	chr18:12329430-12329787(-)$1	357	27	33	16.2051
AAGAAG	chr3:184041159-184041476(+)$1	317	193	199	16.2051
CAGAAG	chr3:184049188-184049457(+)$1	269	68	74	14.1538
AAGAAG	chr1:202742204-202742476(-)$1	272	70	76	16.2051
AAGAAG	chr8:11687731-11688002(+)$1	271	39	45	16.2051
AAGAAG	chr17:41167952-41168247(-)$1	295	116	122	16.2051
AAGAAG	chr5:138239937-138240229(+)$1	292	134	140	16.2051
AAGAAG	chr15:72501073-72501306(-)$1	233	124	130	16.2051

#otherMatches

#Struct PSSM
""dddd	chr9:95025150-95025372(-)$1	222	174	180	16.2051
ddddcc	chr11:34120831-34121068(+)$1	237	147	153	14.1538
::::::	chr8:80831127-80831459(-)$1	332	222	228	16.2051
:::::c	chr15:72499028-72499258(-)$1	230	55	61	16.2051
dddddd	chr8:56986215-56986428(-)$1	213	33	39	14.1538
C}A}DD	chr17:37054565-37054856(+)$1	291	180	186	16.2051
]bb::d	chr16:56501038-56501305(+)$1	267	169	175	16.2051
]bb444	chr12:6879233-6879485(+)$1	252	95	101	16.2051
::hhhh	chr3:184038615-184038865(+)$1	250	44	50	16.2051
FBBKKC	chr16:85840354-85840677(+)$1	323	117	123	16.2051
eee:::	chr6:160199702-160199959(+)$1	257	86	92	14.1538
oooooc	chr14:24651116-24651376(-)$1	260	28	34	13.6410
B}JJJJ	chr17:7481128-7481334(+)$1	206	133	139	14.1538
EEEEcc	chr5:33459830-33460067(+)$1	237	89	95	13.6410
deeeee	chr9:35067925-35068156(-)$1	231	150	156	16.2051
999999	chr14:23945349-23945622(+)$1	273	121	127	16.2051
FFFFFF	chr14:23495289-23495576(-)$1	287	252	258	13.6410
!fffff	chr1:11076817-11077137(+)$1	320	33	39	16.2051
======	chr17:57728523-57728755(+)$1	232	91	97	16.2051
b####d	chr16:28855639-28855859(-)$1	220	20	26	14.1538
nnnna2	chr2:198361950-198362216(-)$1	266	245	251	16.2051
:::DDD	chr17:4862611-4862898(-)$1	287	22	28	16.2051
a]bb]b	chr16:11941470-11941719(-)$1	249	85	91	14.1538
ddd:ff	chr3:184041642-184041862(+)$1	220	57	63	13.6410
@@@@@@	chr14:21550127-21550378(+)$1	251	205	211	16.2051
ppbb99	chr12:27888308-27888559(+)$1	251	107	113	16.2051
'''''e	chr12:57627755-57627993(+)$1	238	148	154	16.2051
5555ee	chr2:42530143-42530385(+)$1	242	134	140	14.1538
iiiiii	chr17:40140684-40140982(-)$1	298	93	99	16.2051
eeee[b	chr3:184019536-184019833(+)$1	297	44	50	13.6410
qqdddd	chr16:85838450-85838726(+)$1	276	22	28	14.1538
]eeeee	chr18:12329430-12329787(-)$1	357	27	33	16.2051
hhhh[d	chr3:184041159-184041476(+)$1	317	193	199	16.2051
ooooof	chr3:184049188-184049457(+)$1	269	68	74	14.1538
LLLDDD	chr1:202742204-202742476(-)$1	272	70	76	16.2051
22ccc]	chr8:11687731-11688002(+)$1	271	39	45	16.2051
}BB~~~	chr17:41167952-41168247(-)$1	295	116	122	16.2051
]ccc]b	chr5:138239937-138240229(+)$1	292	134	140	16.2051
!!eeee	chr15:72501073-72501306(-)$1	233	124	130	16.2051

#DB
..((((	chr9:95025150-95025372(-)$1	1	174	180	16.2051
((((((	chr11:34120831-34121068(+)$1	1	147	153	14.1538
......	chr8:80831127-80831459(-)$1	1	222	228	16.2051
.....(	chr15:72499028-72499258(-)$1	1	55	61	16.2051
))))))	chr8:56986215-56986428(-)$1	1	33	39	14.1538
).).))	chr17:37054565-37054856(+)$1	1	180	186	16.2051
.))..(	chr16:56501038-56501305(+)$1	1	169	175	16.2051
.))...	chr12:6879233-6879485(+)$1	1	95	101	16.2051
..((((	chr3:184038615-184038865(+)$1	1	44	50	16.2051
(((..(	chr16:85840354-85840677(+)$1	1	117	123	16.2051
)))...	chr6:160199702-160199959(+)$1	1	86	92	14.1538
.....)	chr14:24651116-24651376(-)$1	1	28	34	13.6410
).))))	chr17:7481128-7481334(+)$1	1	133	139	14.1538
((((((	chr5:33459830-33460067(+)$1	1	89	95	13.6410
)(((((	chr9:35067925-35068156(-)$1	1	150	156	16.2051
......	chr14:23945349-23945622(+)$1	1	121	127	16.2051
))))))	chr14:23495289-23495576(-)$1	1	252	258	13.6410
.(((((	chr1:11076817-11077137(+)$1	1	33	39	16.2051
((((((	chr17:57728523-57728755(+)$1	1	91	97	16.2051
(....(	chr16:28855639-28855859(-)$1	1	20	26	14.1538
....).	chr2:198361950-198362216(-)$1	1	245	251	16.2051
...(((	chr17:4862611-4862898(-)$1	1	22	28	16.2051
).)).)	chr16:11941470-11941719(-)$1	1	85	91	14.1538
))).((	chr3:184041642-184041862(+)$1	1	57	63	13.6410
......	chr14:21550127-21550378(+)$1	1	205	211	16.2051
..))..	chr12:27888308-27888559(+)$1	1	107	113	16.2051
.....(	chr12:57627755-57627993(+)$1	1	148	154	16.2051
....))	chr2:42530143-42530385(+)$1	1	134	140	14.1538
))))))	chr17:40140684-40140982(-)$1	1	93	99	16.2051
((((.(	chr3:184019536-184019833(+)$1	1	44	50	13.6410
..))))	chr16:85838450-85838726(+)$1	1	22	28	14.1538
.)))))	chr18:12329430-12329787(-)$1	1	27	33	16.2051
((((.(	chr3:184041159-184041476(+)$1	1	193	199	16.2051
.....)	chr3:184049188-184049457(+)$1	1	68	74	14.1538
...(((	chr1:202742204-202742476(-)$1	1	70	76	16.2051
..))).	chr8:11687731-11688002(+)$1	1	39	45	16.2051
.))...	chr17:41167952-41168247(-)$1	1	116	122	16.2051
.))).)	chr5:138239937-138240229(+)$1	1	134	140	16.2051
..((((	chr15:72501073-72501306(-)$1	1	124	130	16.2051

#PSSM
A : 0.64	C : 0.23	G : 0.12	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	

#score	600.717948717949
#seq	39
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_CDS_m3_run1.nuc.txt

#NT
UGGACAUG	chr16:67178065-67178297(+)$1	232	55	63	14.2777
UGGAGAAG	chr16:89724493-89724758(+)$1	265	219	227	14.0000
uggauaug	chr20:44515676-44515971(-)$1	295	35	43	14.2777
UGCAGAUG	chr22:32003726-32004024(+)$1	298	227	235	14.8333
UGAAGAUG	chr2:96934821-96935110(+)$1	289	92	100	14.5555
UGGAGUUG	chr7:889114-889416(+)$1	302	162	170	16.7777
UGGAGAUG	chr3:195801989-195802294(-)$1	305	133	141	18.4444
UGGGGCUG	chr17:4692816-4693076(+)$1	260	113	121	14.5555
UGGAGCUG	chr17:76115370-76115657(-)$1	287	249	257	17.3333
UGGAGUUG	chr12:121783759-121784010(-)$1	251	108	116	16.7777
UGGGGCUG	chr17:80050791-80051062(-)$1	271	128	136	14.5555
UGCAGAUG	chr21:47966661-47966933(+)$1	272	231	239	14.8333
UGGAGAUA	chr17:79663451-79663712(+)$1	261	82	90	14.0000
UGGGGCUG	chr22:37407260-37407535(-)$1	275	13	21	14.5555
UGGAGGUG	chr13:113980077-113980362(-)$1	285	124	132	16.2222
UGGAGCUG	chr12:6687492-6687813(-)$1	321	67	75	17.3333
UGGAGUUG	chr2:47637256-47637510(+)$1	254	92	100	16.7777

#otherMatches

#Struct PSSM
FFFFF::c	chr20:2640897-2641179(-)$1	282	174	182	15.6666
offffffe	chr16:67178065-67178297(+)$1	232	55	63	14.2777
eeee4444	chr16:89724493-89724758(+)$1	265	219	227	14.0000
vvvvvvvv	chr20:44515676-44515971(-)$1	295	35	43	14.2777
]dddd22c	chr22:32003726-32004024(+)$1	298	227	235	14.8333
qqqqqqcc	chr2:96934821-96935110(+)$1	289	92	100	14.5555
C}FFFFFF	chr7:889114-889416(+)$1	302	162	170	16.7777
a9999999	chr3:195801989-195802294(-)$1	305	133	141	18.4444
a]ffffff	chr17:4692816-4693076(+)$1	260	113	121	14.5555
ddd]bb66	chr17:76115370-76115657(-)$1	287	249	257	17.3333
BB}JJJJJ	chr12:121783759-121784010(-)$1	251	108	116	16.7777
fffff22b	chr17:80050791-80051062(-)$1	271	128	136	14.5555
ccc]ccc2	chr21:47966661-47966933(+)$1	272	231	239	14.8333
gggg::::	chr17:79663451-79663712(+)$1	261	82	90	14.0000
FFFFgggg	chr22:37407260-37407535(-)$1	275	13	21	14.5555
[aeeeeem	chr13:113980077-113980362(-)$1	285	124	132	16.2222
gggggga[	chr12:6687492-6687813(-)$1	321	67	75	17.3333
cccfffff	chr2:47637256-47637510(+)$1	254	92	100	16.7777

#DB
(((((..(	chr20:2640897-2641179(-)$1	1	174	182	15.6666
.))))))(	chr16:67178065-67178297(+)$1	1	55	63	14.2777
))))....	chr16:89724493-89724758(+)$1	1	219	227	14.0000
........	chr20:44515676-44515971(-)$1	1	35	43	14.2777
.))))..)	chr22:32003726-32004024(+)$1	1	227	235	14.8333
......))	chr2:96934821-96935110(+)$1	1	92	100	14.5555
).))))))	chr7:889114-889416(+)$1	1	162	170	16.7777
).......	chr3:195801989-195802294(-)$1	1	133	141	18.4444
).))))))	chr17:4692816-4693076(+)$1	1	113	121	14.5555
))).))..	chr17:76115370-76115657(-)$1	1	249	257	17.3333
)).)))))	chr12:121783759-121784010(-)$1	1	108	116	16.7777
)))))..)	chr17:80050791-80051062(-)$1	1	128	136	14.5555
))).))).	chr21:47966661-47966933(+)$1	1	231	239	14.8333
))))....	chr17:79663451-79663712(+)$1	1	82	90	14.0000
((((((((	chr22:37407260-37407535(-)$1	1	13	21	14.5555
.((((((.	chr13:113980077-113980362(-)$1	1	124	132	16.2222
(((((((.	chr12:6687492-6687813(-)$1	1	67	75	17.3333
))))))))	chr2:47637256-47637510(+)$1	1	92	100	16.7777

#PSSM
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	
G : 0.77	C : 0.11	g : 0.05	A : 0.05	
A : 0.72	G : 0.22	a : 0.05	
G : 0.88	C : 0.05	u : 0.05	
A : 0.44	C : 0.27	U : 0.16	a : 0.05	G : 0.05	
U : 0.88	A : 0.05	u : 0.05	
G : 0.88	g : 0.05	A : 0.05	

#score	279.7777777777779
#seq	18
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_CDS_m2_run1.nuc.txt

#NT
GGCU	chr19:8550805-8551049(+)$1	244	40	44	11.9999
GGCU	chr7:156432977-156433302(-)$1	325	88	92	11.9999
GGCU	chr11:108093067-108093362(-)$1	295	124	128	11.9999
GGCU	chr17:74261444-74261704(+)$1	260	205	209	11.9999
GGCU	chr17:80789598-80789920(+)$1	322	105	109	11.9999
GGCU	chr11:940787-941074(+)$1	287	8	12	11.9999
GGCU	chr16:88717258-88717512(-)$1	254	174	178	11.9999
GGCU	chr1:1689771-1690111(-)$1	340	105	109	11.9999
ggcu	chr21:46281535-46281798(-)$1	263	59	63	11.9999
GGCU	chr19:8550423-8550681(+)$1	258	179	183	11.9999
GGCU	chr1:87379610-87379897(-)$1	287	42	46	11.9999
GGCU	chr12:121124959-121125217(+)$1	258	34	38	11.9999
GGCU	chr19:8551139-8551370(+)$1	231	156	160	11.9999
GGCU	chr17:1552769-1553060(-)$1	291	119	123	11.9999
GGCU	chr1:24118938-24119273(+)$1	335	15	19	11.9999
GGCU	chr19:8550507-8550791(+)$1	284	95	99	11.9999
GGCU	chr17:76117660-76117957(-)$1	297	217	221	11.9999
GGCU	chr16:777314-777622(+)$1	308	49	53	11.9999
GGCU	chr19:8550626-8550907(+)$1	281	18	22	11.9999
GGCU	chr17:29632114-29632405(+)$1	291	153	157	11.9999
GGCU	chr7:65446929-65447298(-)$1	369	21	25	11.9999
GGCU	chr17:80788533-80788836(+)$1	303	50	54	11.9999
GGCU	chr8:145149889-145150126(+)$1	237	39	43	11.9999
GGCU	chr8:94752561-94752871(-)$1	310	85	89	11.9999
GGCU	chr17:80789333-80789590(+)$1	257	97	101	11.9999
GGCU	chr18:34409172-34409401(+)$1	229	135	139	11.9999
GGCU	chr7:6071033-6071337(-)$1	304	164	168	11.9999
GGCU	chr6:32940773-32941013(+)$1	240	101	105	11.9999
GGCU	chr8:145149985-145150240(+)$1	255	31	35	11.9999
GGCU	chr7:6075349-6075583(-)$1	234	16	20	11.9999
GGCU	chr19:1012203-1012500(-)$1	297	56	60	11.9999
ggcu	chr14:103593470-103593864(+)$1	394	84	88	11.9999
GGCU	chr7:141478455-141478709(+)$1	254	224	228	11.9999
GGCU	chr7:6074952-6075204(-)$1	252	177	181	11.9999
GGCU	chr15:28519431-28519668(-)$1	237	47	51	11.9999
GGCU	chr7:104752719-104752984(-)$1	265	96	100	11.9999
GGCU	chr16:74330666-74330962(+)$1	296	33	37	11.9999
ggcu	chr19:55897973-55898227(+)$1	254	226	230	11.9999
GGCU	chr19:8551122-8551339(+)$1	217	173	177	11.9999
ggcu	chr11:940688-940965(+)$1	277	60	64	11.9999
GGCU	chr3:99549246-99549548(+)$1	302	96	100	11.9999
ggcU	chr18:8609607-8609929(+)$1	322	175	179	11.9999
GGCU	chr4:48343876-48344125(+)$1	249	3	7	11.9999
GGCU	chr8:145149926-145150185(+)$1	259	2	6	11.9999
GGCU	chr7:923743-923955(+)$1	212	184	188	11.9999
GGCU	chr2:10583304-10583535(-)$1	231	71	75	11.9999
GGCU	chr16:2301257-2301524(-)$1	267	70	74	11.9999
GGCU	chr19:40331266-40331525(-)$1	259	118	122	11.9999
GGCU	chr9:131418707-131418961(-)$1	254	198	202	11.9999
GGCU	chr16:2301213-2301457(-)$1	244	3	7	11.9999
GGCU	chr6:32940765-32940973(+)$1	208	109	113	11.9999
GGCU	chr19:55628718-55629009(-)$1	291	57	61	11.9999
GGCU	chr2:97482430-97482743(+)$1	313	11	15	11.9999
GGCU	chr17:29632268-29632524(+)$1	256	20	24	11.9999
GGCU	chr19:34919232-34919495(+)$1	263	55	59	11.9999
GGCU	chr2:10583515-10583729(-)$1	214	48	52	11.9999
GGCU	chr2:201728827-201729098(-)$1	271	154	158	11.9999
GGCU	chr19:8550707-8551005(+)$1	298	42	46	11.9999
GGCU	chr7:72721546-72721834(-)$1	288	110	114	11.9999
GGCU	chr6:90503375-90503656(-)$1	281	242	246	11.9999
GGCU	chr2:97482543-97482864(+)$1	321	44	48	11.9999
GGCU	chr1:1689651-1689926(-)$1	275	11	15	11.9999
ggcu	chr6:170123880-170124234(-)$1	354	202	206	11.9999
GGCU	chr17:29622238-29622497(+)$1	259	12	16	11.9999
GGCU	chr11:61644789-61645083(-)$1	294	133	137	11.9999
ggcu	chr11:59382807-59383100(-)$1	293	86	90	11.9999
GGCU	chr22:21212832-21213156(-)$1	324	130	134	11.9999
GGCU	chr7:923755-924006(+)$1	251	172	176	11.9999
GGCU	chr17:29632205-29632464(+)$1	259	62	66	11.9999
ggcu	chr17:80866136-80866390(+)$1	254	139	143	11.9999
GGCU	chr7:104752386-104752669(-)$1	283	60	64	11.9999
ggcu	chr20:42295702-42296047(+)$1	345	161	165	11.9999
GGCU	chr4:151504967-151505248(-)$1	281	1	5	11.9999
GGCU	chr2:10583335-10583540(-)$1	205	76	80	11.9999
GGCU	chr15:28519468-28519705(-)$1	237	84	88	11.9999
GGCU	chr2:179395427-179395692(+)$1	265	125	129	11.9999
GGCU	chrX:152936704-152937006(-)$1	302	22	26	11.9999

#otherMatches

#Struct PSSM
$$dd	chr17:1552925-1553197(-)$1	272	13	17	11.9999
addd	chr19:8550805-8551049(+)$1	244	40	44	11.9999
[fff	chr7:156432977-156433302(-)$1	325	88	92	11.9999
lccc	chr11:108093067-108093362(-)$1	295	124	128	11.9999
gggg	chr17:74261444-74261704(+)$1	260	205	209	11.9999
b]ff	chr17:80789598-80789920(+)$1	322	105	109	11.9999
cc::	chr11:940787-941074(+)$1	287	8	12	11.9999
mddd	chr16:88717258-88717512(-)$1	254	174	178	11.9999
ddd:	chr1:1689771-1690111(-)$1	340	105	109	11.9999
[ddd	chr21:46281535-46281798(-)$1	263	59	63	11.9999
[ddd	chr19:8550423-8550681(+)$1	258	179	183	11.9999
dd[e	chr1:87379610-87379897(-)$1	287	42	46	11.9999
KCCC	chr12:121124959-121125217(+)$1	258	34	38	11.9999
ddd5	chr19:8551139-8551370(+)$1	231	156	160	11.9999
eccc	chr17:1552769-1553060(-)$1	291	119	123	11.9999
ff!!	chr1:24118938-24119273(+)$1	335	15	19	11.9999
[fff	chr19:8550507-8550791(+)$1	284	95	99	11.9999
EEE}	chr17:76117660-76117957(-)$1	297	217	221	11.9999
ffpp	chr16:777314-777622(+)$1	308	49	53	11.9999
{DDD	chr19:8550626-8550907(+)$1	281	18	22	11.9999
!!cc	chr17:29632114-29632405(+)$1	291	153	157	11.9999
dccc	chr7:65446929-65447298(-)$1	369	21	25	11.9999
hhhh	chr17:80788533-80788836(+)$1	303	50	54	11.9999
ccc!	chr8:145149889-145150126(+)$1	237	39	43	11.9999
{CCC	chr8:94752561-94752871(-)$1	310	85	89	11.9999
eeee	chr17:80789333-80789590(+)$1	257	97	101	11.9999
ggg2	chr18:34409172-34409401(+)$1	229	135	139	11.9999
bb[=	chr7:6071033-6071337(-)$1	304	164	168	11.9999
}FFF	chr6:32940773-32941013(+)$1	240	101	105	11.9999
eEEE	chr8:145149985-145150240(+)$1	255	31	35	11.9999
NDDD	chr7:6075349-6075583(-)$1	234	16	20	11.9999
::==	chr19:1012203-1012500(-)$1	297	56	60	11.9999
iiii	chr14:103593470-103593864(+)$1	394	84	88	11.9999
ffff	chr7:141478455-141478709(+)$1	254	224	228	11.9999
DDDD	chr7:6074952-6075204(-)$1	252	177	181	11.9999
ohhh	chr15:28519431-28519668(-)$1	237	47	51	11.9999
ffff	chr7:104752719-104752984(-)$1	265	96	100	11.9999
dddd	chr16:74330666-74330962(+)$1	296	33	37	11.9999
HHHH	chr19:55897973-55898227(+)$1	254	226	230	11.9999
ddd5	chr19:8551122-8551339(+)$1	217	173	177	11.9999
dbb[	chr11:940688-940965(+)$1	277	60	64	11.9999
dddd	chr3:99549246-99549548(+)$1	302	96	100	11.9999
GGGG	chr18:8609607-8609929(+)$1	322	175	179	11.9999
GGGG	chr4:48343876-48344125(+)$1	249	3	7	11.9999
:III	chr8:145149926-145150185(+)$1	259	2	6	11.9999
:BBY	chr7:923743-923955(+)$1	212	184	188	11.9999
ffff	chr2:10583304-10583535(-)$1	231	71	75	11.9999
a]cc	chr16:2301257-2301524(-)$1	267	70	74	11.9999
ccc:	chr19:40331266-40331525(-)$1	259	118	122	11.9999
a[ee	chr9:131418707-131418961(-)$1	254	198	202	11.9999
ccmm	chr16:2301213-2301457(-)$1	244	3	7	11.9999
oooo	chr6:32940765-32940973(+)$1	208	109	113	11.9999
JJJJ	chr19:55628718-55629009(-)$1	291	57	61	11.9999
eeee	chr2:97482430-97482743(+)$1	313	11	15	11.9999
JJJJ	chr17:29632268-29632524(+)$1	256	20	24	11.9999
[bbf	chr19:34919232-34919495(+)$1	263	55	59	11.9999
bb22	chr2:10583515-10583729(-)$1	214	48	52	11.9999
iiii	chr2:201728827-201729098(-)$1	271	154	158	11.9999
cc]f	chr19:8550707-8551005(+)$1	298	42	46	11.9999
ffff	chr7:72721546-72721834(-)$1	288	110	114	11.9999
ccc]	chr6:90503375-90503656(-)$1	281	242	246	11.9999
d[gg	chr2:97482543-97482864(+)$1	321	44	48	11.9999
CBBI	chr1:1689651-1689926(-)$1	275	11	15	11.9999
hhhh	chr6:170123880-170124234(-)$1	354	202	206	11.9999
ggge	chr17:29622238-29622497(+)$1	259	12	16	11.9999
:ccc	chr11:61644789-61645083(-)$1	294	133	137	11.9999
dddd	chr11:59382807-59383100(-)$1	293	86	90	11.9999
[bb[	chr22:21212832-21213156(-)$1	324	130	134	11.9999
cccc	chr7:923755-924006(+)$1	251	172	176	11.9999
!!cc	chr17:29632205-29632464(+)$1	259	62	66	11.9999
b[hh	chr17:80866136-80866390(+)$1	254	139	143	11.9999
b:dd	chr7:104752386-104752669(-)$1	283	60	64	11.9999
3ddd	chr20:42295702-42296047(+)$1	345	161	165	11.9999
ffff	chr4:151504967-151505248(-)$1	281	1	5	11.9999
ffff	chr2:10583335-10583540(-)$1	205	76	80	11.9999
ohhh	chr15:28519468-28519705(-)$1	237	84	88	11.9999
ccee	chr2:179395427-179395692(+)$1	265	125	129	11.9999
hhhh	chrX:152936704-152937006(-)$1	302	22	26	11.9999

#DB
..((	chr17:1552925-1553197(-)$1	1	13	17	11.9999
((((	chr19:8550805-8551049(+)$1	1	40	44	11.9999
.(((	chr7:156432977-156433302(-)$1	1	88	92	11.9999
.)))	chr11:108093067-108093362(-)$1	1	124	128	11.9999
((((	chr17:74261444-74261704(+)$1	1	205	209	11.9999
).))	chr17:80789598-80789920(+)$1	1	105	109	11.9999
))..	chr11:940787-941074(+)$1	1	8	12	11.9999
.)))	chr16:88717258-88717512(-)$1	1	174	178	11.9999
))).	chr1:1689771-1690111(-)$1	1	105	109	11.9999
.(((	chr21:46281535-46281798(-)$1	1	59	63	11.9999
.(((	chr19:8550423-8550681(+)$1	1	179	183	11.9999
((.(	chr1:87379610-87379897(-)$1	1	42	46	11.9999
.(((	chr12:121124959-121125217(+)$1	1	34	38	11.9999
))).	chr19:8551139-8551370(+)$1	1	156	160	11.9999
)(((	chr17:1552769-1553060(-)$1	1	119	123	11.9999
((..	chr1:24118938-24119273(+)$1	1	15	19	11.9999
.(((	chr19:8550507-8550791(+)$1	1	95	99	11.9999
))).	chr17:76117660-76117957(-)$1	1	217	221	11.9999
((..	chr16:777314-777622(+)$1	1	49	53	11.9999
.(((	chr19:8550626-8550907(+)$1	1	18	22	11.9999
..((	chr17:29632114-29632405(+)$1	1	153	157	11.9999
((((	chr7:65446929-65447298(-)$1	1	21	25	11.9999
((((	chr17:80788533-80788836(+)$1	1	50	54	11.9999
(((.	chr8:145149889-145150126(+)$1	1	39	43	11.9999
.(((	chr8:94752561-94752871(-)$1	1	85	89	11.9999
((((	chr17:80789333-80789590(+)$1	1	97	101	11.9999
))).	chr18:34409172-34409401(+)$1	1	135	139	11.9999
((.(	chr7:6071033-6071337(-)$1	1	164	168	11.9999
.)))	chr6:32940773-32941013(+)$1	1	101	105	11.9999
)(((	chr8:145149985-145150240(+)$1	1	31	35	11.9999
.(((	chr7:6075349-6075583(-)$1	1	16	20	11.9999
..((	chr19:1012203-1012500(-)$1	1	56	60	11.9999
))))	chr14:103593470-103593864(+)$1	1	84	88	11.9999
((((	chr7:141478455-141478709(+)$1	1	224	228	11.9999
))))	chr7:6074952-6075204(-)$1	1	177	181	11.9999
.)))	chr15:28519431-28519668(-)$1	1	47	51	11.9999
))))	chr7:104752719-104752984(-)$1	1	96	100	11.9999
))))	chr16:74330666-74330962(+)$1	1	33	37	11.9999
))))	chr19:55897973-55898227(+)$1	1	226	230	11.9999
))).	chr19:8551122-8551339(+)$1	1	173	177	11.9999
(((.	chr11:940688-940965(+)$1	1	60	64	11.9999
))))	chr3:99549246-99549548(+)$1	1	96	100	11.9999
))))	chr18:8609607-8609929(+)$1	1	175	179	11.9999
((((	chr4:48343876-48344125(+)$1	1	3	7	11.9999
.(((	chr8:145149926-145150185(+)$1	1	2	6	11.9999
.)).	chr7:923743-923955(+)$1	1	184	188	11.9999
))))	chr2:10583304-10583535(-)$1	1	71	75	11.9999
).))	chr16:2301257-2301524(-)$1	1	70	74	11.9999
))).	chr19:40331266-40331525(-)$1	1	118	122	11.9999
(.((	chr9:131418707-131418961(-)$1	1	198	202	11.9999
((..	chr16:2301213-2301457(-)$1	1	3	7	11.9999
....	chr6:32940765-32940973(+)$1	1	109	113	11.9999
((((	chr19:55628718-55629009(-)$1	1	57	61	11.9999
((((	chr2:97482430-97482743(+)$1	1	11	15	11.9999
((((	chr17:29632268-29632524(+)$1	1	20	24	11.9999
.(((	chr19:34919232-34919495(+)$1	1	55	59	11.9999
))..	chr2:10583515-10583729(-)$1	1	48	52	11.9999
))))	chr2:201728827-201729098(-)$1	1	154	158	11.9999
)).)	chr19:8550707-8551005(+)$1	1	42	46	11.9999
((((	chr7:72721546-72721834(-)$1	1	110	114	11.9999
))).	chr6:90503375-90503656(-)$1	1	242	246	11.9999
(.((	chr2:97482543-97482864(+)$1	1	44	48	11.9999
((((	chr1:1689651-1689926(-)$1	1	11	15	11.9999
((((	chr6:170123880-170124234(-)$1	1	202	206	11.9999
((((	chr17:29622238-29622497(+)$1	1	12	16	11.9999
.(((	chr11:61644789-61645083(-)$1	1	133	137	11.9999
))))	chr11:59382807-59383100(-)$1	1	86	90	11.9999
.((.	chr22:21212832-21213156(-)$1	1	130	134	11.9999
))))	chr7:923755-924006(+)$1	1	172	176	11.9999
..((	chr17:29632205-29632464(+)$1	1	62	66	11.9999
(.((	chr17:80866136-80866390(+)$1	1	139	143	11.9999
).((	chr7:104752386-104752669(-)$1	1	60	64	11.9999
.)))	chr20:42295702-42296047(+)$1	1	161	165	11.9999
((((	chr4:151504967-151505248(-)$1	1	1	5	11.9999
))))	chr2:10583335-10583540(-)$1	1	76	80	11.9999
.)))	chr15:28519468-28519705(-)$1	1	84	88	11.9999
((((	chr2:179395427-179395692(+)$1	1	125	129	11.9999
((((	chrX:152936704-152937006(-)$1	1	22	26	11.9999

#PSSM
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
C : 0.88	c : 0.11	
U : 0.89	u : 0.10	

#score	935.9999999999998
#seq	78
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_CDS_m2_run2.nuc.txt

#NT
CUGG	chr11:126146108-126146400(+)$1	292	167	171	12.0000
CUGG	chr17:7414682-7414930(+)$1	248	129	133	12.0000
CUGG	chr18:51750757-51751054(-)$1	297	109	113	12.0000
CUGG	chr5:154135348-154135594(+)$1	246	38	42	12.0000
CUGG	chr6:111135990-111136317(-)$1	327	2	6	12.0000
CUGG	chr17:79223763-79224038(-)$1	275	4	8	12.0000
CUGG	chrX:41193771-41194026(+)$1	255	101	105	12.0000
cugg	chr12:122186011-122186365(+)$1	354	0	4	12.0000
CUGG	chr11:2405786-2406026(+)$1	240	9	13	12.0000
CUGG	chr19:1474679-1474927(-)$1	248	33	37	12.0000
CUGG	chr12:132401761-132402099(+)$1	338	203	207	12.0000
CUGG	chr19:42788681-42788957(+)$1	276	253	257	12.0000
CUGG	chr12:49444054-49444313(-)$1	259	36	40	12.0000
CUGG	chr22:19704769-19705094(+)$1	325	11	15	12.0000
CUGG	chr1:213031653-213031954(+)$1	301	134	138	12.0000
CUgg	chr8:30669797-30670094(-)$1	297	38	42	12.0000
CUGG	chr12:56552136-56552472(+)$1	336	189	193	12.0000
CUGG	chr11:208987-209287(+)$1	300	88	92	12.0000
CUGG	chr2:172379715-172380011(+)$1	296	103	107	12.0000
CUGG	chr2:172379606-172379895(+)$1	289	212	216	12.0000
CUGG	chr11:68852519-68852792(+)$1	273	26	30	12.0000
CUGG	chr22:45724172-45724399(+)$1	227	25	29	12.0000
CUGG	chr22:20110068-20110318(+)$1	250	134	138	12.0000
CUGG	chr16:8734865-8735146(+)$1	281	145	149	12.0000
CUGG	chr19:44284852-44285117(-)$1	265	64	68	12.0000
CUGG	chr16:81074850-81075133(+)$1	283	150	154	12.0000
CUGG	chr16:1421487-1421734(-)$1	247	84	88	12.0000
CUGG	chr11:199795-200072(-)$1	277	33	37	12.0000
CUGG	chr4:52709706-52709986(+)$1	280	2	6	12.0000
CUGG	chr8:103424343-103424626(-)$1	283	58	62	12.0000
cugG	chr19:14266798-14267041(+)$1	243	52	56	12.0000
CUGG	chr16:2580582-2580938(+)$1	356	10	14	12.0000
CUGG	chr9:126692083-126692383(-)$1	300	9	13	12.0000
CUGG	chr19:55856229-55856506(+)$1	277	43	47	12.0000
CUGG	chr1:228329200-228329459(+)$1	259	2	6	12.0000
CUGG	chr5:154135283-154135539(+)$1	256	62	66	12.0000
CUGG	chr4:48344033-48344321(+)$1	288	38	42	12.0000
cugg	chr19:47778090-47778327(+)$1	237	31	35	12.0000
CUGG	chr1:27023201-27023442(+)$1	241	228	232	12.0000
CUGG	chr16:89975254-89975628(+)$1	374	49	53	12.0000
CUGG	chr7:104752889-104753196(-)$1	307	84	88	12.0000
CUGG	chr11:126146200-126146447(+)$1	247	75	79	12.0000
CUGG	chr15:80215712-80215959(-)$1	247	4	8	12.0000
CUGG	chr11:639265-639550(+)$1	285	39	43	12.0000
CUGG	chr11:558788-559063(+)$1	275	19	23	12.0000
CUGG	chr12:57919842-57920136(+)$1	294	154	158	12.0000
CUGG	chr7:1481966-1482222(-)$1	256	61	65	12.0000
CUGG	chr19:1416404-1416664(+)$1	260	104	108	12.0000
CUGG	chr19:14273428-14273683(+)$1	255	59	63	12.0000
CUGG	chr17:7476602-7476864(+)$1	262	22	26	12.0000
cugg	chr19:38876349-38876634(+)$1	285	51	55	12.0000
cugg	chr9:140323142-140323446(+)$1	304	33	37	12.0000
CUGG	chr15:80215039-80215351(-)$1	312	3	7	12.0000
CUGG	chr19:2270516-2270736(+)$1	220	2	6	12.0000
CUGG	chr3:10360777-10361104(-)$1	327	115	119	12.0000
CUGG	chr11:2005455-2005814(+)$1	359	11	15	12.0000
CUGG	chr2:58386577-58386860(-)$1	283	131	135	12.0000
cugg	chr12:53858529-53858736(+)$1	207	86	90	12.0000
CUGG	chr16:599475-599739(+)$1	264	181	185	12.0000
CUGG	chr19:35631987-35632231(-)$1	244	188	192	12.0000
CUGG	chr1:155658042-155658334(-)$1	292	178	182	12.0000
CUGG	chr17:80708365-80708642(+)$1	277	71	75	12.0000
CUGG	chr19:798345-798635(+)$1	290	22	26	12.0000
cugg	chr19:49964819-49965074(+)$1	255	12	16	12.0000
CUGG	chr2:132044624-132044857(+)$1	233	11	15	12.0000
CUGG	chr12:54402913-54403227(+)$1	314	53	57	12.0000
CUGG	chr19:51322349-51322604(-)$1	255	249	253	12.0000
CUGG	chr15:68491918-68492205(-)$1	287	171	175	12.0000
CUGG	chr21:46359895-46360143(+)$1	248	211	215	12.0000
CUGG	chr7:127669392-127669688(+)$1	296	254	258	12.0000
CUGG	chr1:228329286-228329594(+)$1	308	52	56	12.0000
CUGG	chr11:1775305-1775559(-)$1	254	43	47	12.0000
CUGG	chr5:179248442-179248718(+)$1	276	41	45	12.0000
CUGG	chr9:80645327-80645588(-)$1	261	136	140	12.0000
CUGG	chr19:55998138-55998397(+)$1	259	22	26	12.0000
CUGG	chr14:24901238-24901545(+)$1	307	55	59	12.0000
CUGG	chr20:62331700-62331959(-)$1	259	191	195	12.0000
CUGG	chr22:50017039-50017291(-)$1	252	11	15	12.0000
CUGG	chr11:637281-637544(+)$1	263	59	63	12.0000
CUGG	chr2:113999252-113999548(+)$1	296	51	55	12.0000
CUGG	chr12:49434647-49434906(-)$1	259	6	10	12.0000
CUGG	chr2:28974938-28975208(+)$1	270	25	29	12.0000
CUGG	chr17:79220712-79220973(-)$1	261	52	56	12.0000
CUGG	chr11:236089-236384(-)$1	295	64	68	12.0000
CUGG	chr3:72495775-72496027(-)$1	252	5	9	12.0000

#otherMatches

#Struct PSSM
dddd	chr17:80708442-80708714(+)$1	272	122	126	12.0000
nngg	chr11:126146108-126146400(+)$1	292	167	171	12.0000
eee]	chr17:7414682-7414930(+)$1	248	129	133	12.0000
ffqq	chr18:51750757-51751054(-)$1	297	109	113	12.0000
c[cc	chr5:154135348-154135594(+)$1	246	38	42	12.0000
EEEE	chr6:111135990-111136317(-)$1	327	2	6	12.0000
::::	chr17:79223763-79224038(-)$1	275	4	8	12.0000
eemm	chrX:41193771-41194026(+)$1	255	101	105	12.0000
::::	chr12:122186011-122186365(+)$1	354	0	4	12.0000
gggg	chr11:2405786-2406026(+)$1	240	9	13	12.0000
"fff	chr19:1474679-1474927(-)$1	248	33	37	12.0000
bbff	chr12:132401761-132402099(+)$1	338	203	207	12.0000
c]ee	chr19:42788681-42788957(+)$1	276	253	257	12.0000
OOII	chr12:49444054-49444313(-)$1	259	36	40	12.0000
gggg	chr22:19704769-19705094(+)$1	325	11	15	12.0000
c'''	chr1:213031653-213031954(+)$1	301	134	138	12.0000
eee[	chr8:30669797-30670094(-)$1	297	38	42	12.0000
ee[a	chr12:56552136-56552472(+)$1	336	189	193	12.0000
EEcc	chr11:208987-209287(+)$1	300	88	92	12.0000
ggpp	chr2:172379715-172380011(+)$1	296	103	107	12.0000
EE}C	chr2:172379606-172379895(+)$1	289	212	216	12.0000
dddd	chr11:68852519-68852792(+)$1	273	26	30	12.0000
bbEE	chr22:45724172-45724399(+)$1	227	25	29	12.0000
bb[a	chr22:20110068-20110318(+)$1	250	134	138	12.0000
ffff	chr16:8734865-8735146(+)$1	281	145	149	12.0000
ddd!	chr19:44284852-44285117(-)$1	265	64	68	12.0000
:eee	chr16:81074850-81075133(+)$1	283	150	154	12.0000
annn	chr16:1421487-1421734(-)$1	247	84	88	12.0000
dddb	chr11:199795-200072(-)$1	277	33	37	12.0000
gggg	chr4:52709706-52709986(+)$1	280	2	6	12.0000
ff[a	chr8:103424343-103424626(-)$1	283	58	62	12.0000
ddd2	chr19:14266798-14267041(+)$1	243	52	56	12.0000
HHHH	chr16:2580582-2580938(+)$1	356	10	14	12.0000
cc!!	chr9:126692083-126692383(-)$1	300	9	13	12.0000
f:CC	chr19:55856229-55856506(+)$1	277	43	47	12.0000
EEEE	chr1:228329200-228329459(+)$1	259	2	6	12.0000
EEKK	chr5:154135283-154135539(+)$1	256	62	66	12.0000
[ccc	chr4:48344033-48344321(+)$1	288	38	42	12.0000
{CCC	chr19:47778090-47778327(+)$1	237	31	35	12.0000
33dd	chr1:27023201-27023442(+)$1	241	228	232	12.0000
cccc	chr16:89975254-89975628(+)$1	374	49	53	12.0000
dddl	chr7:104752889-104753196(-)$1	307	84	88	12.0000
nngg	chr11:126146200-126146447(+)$1	247	75	79	12.0000
IIII	chr15:80215712-80215959(-)$1	247	4	8	12.0000
$$dd	chr11:639265-639550(+)$1	285	39	43	12.0000
IIII	chr11:558788-559063(+)$1	275	19	23	12.0000
D}EE	chr12:57919842-57920136(+)$1	294	154	158	12.0000
cccm	chr7:1481966-1482222(-)$1	256	61	65	12.0000
ffff	chr19:1416404-1416664(+)$1	260	104	108	12.0000
ggg4	chr19:14273428-14273683(+)$1	255	59	63	12.0000
GGGG	chr17:7476602-7476864(+)$1	262	22	26	12.0000
cc]e	chr19:38876349-38876634(+)$1	285	51	55	12.0000
GG::	chr9:140323142-140323446(+)$1	304	33	37	12.0000
D:::	chr15:80215039-80215351(-)$1	312	3	7	12.0000
FFFF	chr19:2270516-2270736(+)$1	220	2	6	12.0000
ZZCC	chr3:10360777-10361104(-)$1	327	115	119	12.0000
b[dd	chr11:2005455-2005814(+)$1	359	11	15	12.0000
e22c	chr2:58386577-58386860(-)$1	283	131	135	12.0000
:fff	chr12:53858529-53858736(+)$1	207	86	90	12.0000
ddd]	chr16:599475-599739(+)$1	264	181	185	12.0000
CCC}	chr19:35631987-35632231(-)$1	244	188	192	12.0000
gg44	chr1:155658042-155658334(-)$1	292	178	182	12.0000
{CCC	chr17:80708365-80708642(+)$1	277	71	75	12.0000
cc]a	chr19:798345-798635(+)$1	290	22	26	12.0000
J:hh	chr19:49964819-49965074(+)$1	255	12	16	12.0000
FFFF	chr2:132044624-132044857(+)$1	233	11	15	12.0000
aooo	chr12:54402913-54403227(+)$1	314	53	57	12.0000
DDDD	chr19:51322349-51322604(-)$1	255	249	253	12.0000
DDDD	chr15:68491918-68492205(-)$1	287	171	175	12.0000
ffff	chr21:46359895-46360143(+)$1	248	211	215	12.0000
CCCD	chr7:127669392-127669688(+)$1	296	254	258	12.0000
eell	chr1:228329286-228329594(+)$1	308	52	56	12.0000
A{A{	chr11:1775305-1775559(-)$1	254	43	47	12.0000
GGGG	chr5:179248442-179248718(+)$1	276	41	45	12.0000
bbcc	chr9:80645327-80645588(-)$1	261	136	140	12.0000
ggee	chr19:55998138-55998397(+)$1	259	22	26	12.0000
BLLL	chr14:24901238-24901545(+)$1	307	55	59	12.0000
eee[	chr20:62331700-62331959(-)$1	259	191	195	12.0000
ffff	chr22:50017039-50017291(-)$1	252	11	15	12.0000
eCCC	chr11:637281-637544(+)$1	263	59	63	12.0000
::cc	chr2:113999252-113999548(+)$1	296	51	55	12.0000
::FF	chr12:49434647-49434906(-)$1	259	6	10	12.0000
BB{B	chr2:28974938-28975208(+)$1	270	25	29	12.0000
cccl	chr17:79220712-79220973(-)$1	261	52	56	12.0000
EEE{	chr11:236089-236384(-)$1	295	64	68	12.0000
LLBB	chr3:72495775-72496027(-)$1	252	5	9	12.0000

#DB
))))	chr17:80708442-80708714(+)$1	1	122	126	12.0000
..))	chr11:126146108-126146400(+)$1	1	167	171	12.0000
))).	chr17:7414682-7414930(+)$1	1	129	133	12.0000
((..	chr18:51750757-51751054(-)$1	1	109	113	12.0000
(.((	chr5:154135348-154135594(+)$1	1	38	42	12.0000
((((	chr6:111135990-111136317(-)$1	1	2	6	12.0000
....	chr17:79223763-79224038(-)$1	1	4	8	12.0000
((..	chrX:41193771-41194026(+)$1	1	101	105	12.0000
....	chr12:122186011-122186365(+)$1	1	0	4	12.0000
((((	chr11:2405786-2406026(+)$1	1	9	13	12.0000
.(((	chr19:1474679-1474927(-)$1	1	33	37	12.0000
))))	chr12:132401761-132402099(+)$1	1	203	207	12.0000
).))	chr19:42788681-42788957(+)$1	1	253	257	12.0000
..((	chr12:49444054-49444313(-)$1	1	36	40	12.0000
((((	chr22:19704769-19705094(+)$1	1	11	15	12.0000
(...	chr1:213031653-213031954(+)$1	1	134	138	12.0000
(((.	chr8:30669797-30670094(-)$1	1	38	42	12.0000
((.(	chr12:56552136-56552472(+)$1	1	189	193	12.0000
((((	chr11:208987-209287(+)$1	1	88	92	12.0000
((..	chr2:172379715-172380011(+)$1	1	103	107	12.0000
)).)	chr2:172379606-172379895(+)$1	1	212	216	12.0000
((((	chr11:68852519-68852792(+)$1	1	26	30	12.0000
))((	chr22:45724172-45724399(+)$1	1	25	29	12.0000
((.(	chr22:20110068-20110318(+)$1	1	134	138	12.0000
((((	chr16:8734865-8735146(+)$1	1	145	149	12.0000
(((.	chr19:44284852-44285117(-)$1	1	64	68	12.0000
.(((	chr16:81074850-81075133(+)$1	1	150	154	12.0000
(...	chr16:1421487-1421734(-)$1	1	84	88	12.0000
))))	chr11:199795-200072(-)$1	1	33	37	12.0000
((((	chr4:52709706-52709986(+)$1	1	2	6	12.0000
((.(	chr8:103424343-103424626(-)$1	1	58	62	12.0000
))).	chr19:14266798-14267041(+)$1	1	52	56	12.0000
((((	chr16:2580582-2580938(+)$1	1	10	14	12.0000
((..	chr9:126692083-126692383(-)$1	1	9	13	12.0000
).((	chr19:55856229-55856506(+)$1	1	43	47	12.0000
((((	chr1:228329200-228329459(+)$1	1	2	6	12.0000
((..	chr5:154135283-154135539(+)$1	1	62	66	12.0000
.(((	chr4:48344033-48344321(+)$1	1	38	42	12.0000
.(((	chr19:47778090-47778327(+)$1	1	31	35	12.0000
..))	chr1:27023201-27023442(+)$1	1	228	232	12.0000
((((	chr16:89975254-89975628(+)$1	1	49	53	12.0000
(((.	chr7:104752889-104753196(-)$1	1	84	88	12.0000
..))	chr11:126146200-126146447(+)$1	1	75	79	12.0000
((((	chr15:80215712-80215959(-)$1	1	4	8	12.0000
..((	chr11:639265-639550(+)$1	1	39	43	12.0000
((((	chr11:558788-559063(+)$1	1	19	23	12.0000
).))	chr12:57919842-57920136(+)$1	1	154	158	12.0000
(((.	chr7:1481966-1482222(-)$1	1	61	65	12.0000
))))	chr19:1416404-1416664(+)$1	1	104	108	12.0000
))).	chr19:14273428-14273683(+)$1	1	59	63	12.0000
((((	chr17:7476602-7476864(+)$1	1	22	26	12.0000
)).)	chr19:38876349-38876634(+)$1	1	51	55	12.0000
((..	chr9:140323142-140323446(+)$1	1	33	37	12.0000
(...	chr15:80215039-80215351(-)$1	1	3	7	12.0000
((((	chr19:2270516-2270736(+)$1	1	2	6	12.0000
..))	chr3:10360777-10361104(-)$1	1	115	119	12.0000
(.((	chr11:2005455-2005814(+)$1	1	11	15	12.0000
)..)	chr2:58386577-58386860(-)$1	1	131	135	12.0000
.(((	chr12:53858529-53858736(+)$1	1	86	90	12.0000
))).	chr16:599475-599739(+)$1	1	181	185	12.0000
))).	chr19:35631987-35632231(-)$1	1	188	192	12.0000
))..	chr1:155658042-155658334(-)$1	1	178	182	12.0000
.(((	chr17:80708365-80708642(+)$1	1	71	75	12.0000
)).)	chr19:798345-798635(+)$1	1	22	26	12.0000
(.((	chr19:49964819-49965074(+)$1	1	12	16	12.0000
((((	chr2:132044624-132044857(+)$1	1	11	15	12.0000
(...	chr12:54402913-54403227(+)$1	1	53	57	12.0000
))))	chr19:51322349-51322604(-)$1	1	249	253	12.0000
((((	chr15:68491918-68492205(-)$1	1	171	175	12.0000
))))	chr21:46359895-46360143(+)$1	1	211	215	12.0000
))))	chr7:127669392-127669688(+)$1	1	254	258	12.0000
((..	chr1:228329286-228329594(+)$1	1	52	56	12.0000
(.(.	chr11:1775305-1775559(-)$1	1	43	47	12.0000
((((	chr5:179248442-179248718(+)$1	1	41	45	12.0000
((((	chr9:80645327-80645588(-)$1	1	136	140	12.0000
))((	chr19:55998138-55998397(+)$1	1	22	26	12.0000
(...	chr14:24901238-24901545(+)$1	1	55	59	12.0000
(((.	chr20:62331700-62331959(-)$1	1	191	195	12.0000
((((	chr22:50017039-50017291(-)$1	1	11	15	12.0000
)(((	chr11:637281-637544(+)$1	1	59	63	12.0000
..((	chr2:113999252-113999548(+)$1	1	51	55	12.0000
..((	chr12:49434647-49434906(-)$1	1	6	10	12.0000
((.(	chr2:28974938-28975208(+)$1	1	25	29	12.0000
(((.	chr17:79220712-79220973(-)$1	1	52	56	12.0000
(((.	chr11:236089-236384(-)$1	1	64	68	12.0000
..((	chr3:72495775-72496027(-)$1	1	5	9	12.0000

#PSSM
C : 0.91	c : 0.08	
U : 0.91	u : 0.08	
G : 0.90	g : 0.09	
G : 0.91	g : 0.08	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_UTR_m1_run2.nuc.txt

#NT
GCGGG	chr11:70244543-70244823(+)$1	280	13	18	14.9999
GCGGG	chr17:48796865-48797135(+)$1	270	140	145	14.9999
GCGGG	chr4:151936253-151936479(-)$1	226	94	99	14.9999
GCGGG	chr5:138677524-138677772(+)$1	248	45	50	14.9999
gcggg	chr6:36410699-36410989(+)$1	290	68	73	14.9999
GCGGG	chr21:44527514-44527773(-)$1	259	65	70	14.9999
GCGGG	chr17:900271-900659(+)$1	388	70	75	14.9999
GCGGG	chr3:25824649-25824911(-)$1	262	184	189	14.9999
GCGGG	chr16:58163035-58163307(-)$1	272	29	34	14.9999
GCGGG	chr1:10532279-10532657(-)$1	378	336	341	14.9999
GCGGG	chr6:31783257-31783487(+)$1	230	13	18	14.9999
GCGGG	chr14:62229056-62229391(+)$1	335	30	35	14.9999
GCGGG	chr3:48481712-48481923(+)$1	211	36	41	14.9999
GCGGG	chr3:196230270-196230591(-)$1	321	305	310	14.9999
GCGGG	chr2:177134193-177134453(+)$1	260	62	67	14.9999
GCGGG	chr15:75074441-75074710(+)$1	269	230	235	14.9999
GCGGG	chr19:16770675-16770912(-)$1	237	62	67	14.9999
GCGGG	chr16:85832915-85833253(-)$1	338	296	301	14.9999
GCGGG	chr8:29940395-29940677(-)$1	282	225	230	14.9999
GCGGG	chr16:67260963-67261228(+)$1	265	5	10	14.9999
GCGGG	chr18:32924236-32924493(-)$1	257	174	179	14.9999
GCGGG	chrX:55246755-55246986(+)$1	231	190	195	14.9999
GCGGG	chr1:156561473-156561777(+)$1	304	58	63	14.9999
GCGGG	chr3:9833888-9834179(-)$1	291	115	120	14.9999
GCGGG	chr1:38273657-38273942(-)$1	285	20	25	14.9999
GCGGG	chr1:179262872-179263172(+)$1	300	82	87	14.9999
GCGGG	chr15:59225508-59225775(-)$1	267	85	90	14.9999
gcggg	chr11:47574533-47574781(-)$1	248	128	133	14.9999
GCGGG	chr19:46916594-46916927(-)$1	333	122	127	14.9999
GCGGG	chr2:95787377-95787674(-)$1	297	184	189	14.9999
GCGGG	chr16:103895-104156(+)$1	261	28	33	14.9999
gcggg	chr2:102314139-102314510(+)$1	371	90	95	14.9999
GCGGG	chr19:36486004-36486250(+)$1	246	36	41	14.9999
GCGGG	chr10:99446753-99447070(-)$1	317	269	274	14.9999
GCGGG	chr14:55493645-55493908(-)$1	263	73	78	14.9999
GCGGG	chr1:109419548-109419954(+)$1	406	9	14	14.9999
GCGGG	chr2:27193410-27193670(+)$1	260	35	40	14.9999
GCGGG	chr7:1199614-1199891(-)$1	277	7	12	14.9999
GCGGG	chr8:125551287-125551528(+)$1	241	202	207	14.9999
GCGGG	chr11:77850503-77850758(-)$1	255	38	43	14.9999
GCGGG	chr2:58273799-58274104(+)$1	305	24	29	14.9999
GCGGG	chr2:55646539-55646815(-)$1	276	65	70	14.9999
GCGGG	chr3:133292480-133292806(+)$1	326	284	289	14.9999
GCGGG	chr8:22462166-22462457(+)$1	291	0	5	14.9999
GCGGG	chr1:54355285-54355566(-)$1	281	42	47	14.9999
GCGGG	chr6:8102597-8102855(-)$1	258	47	52	14.9999
GCGGG	chr15:67546794-67547005(-)$1	211	156	161	14.9999
GCGGG	chr11:102323256-102323596(-)$1	340	116	121	14.9999
GCGGG	chr19:36036499-36036746(+)$1	247	15	20	14.9999
GCGGG	chr1:155880943-155881256(-)$1	313	4	9	14.9999
GCGGG	chr1:27248133-27248447(+)$1	314	36	41	14.9999
gcggg	chr16:88870111-88870361(+)$1	250	33	38	14.9999
GCGGG	chr18:29522839-29523158(-)$1	319	53	58	14.9999
GCGGG	chr9:101867380-101867685(+)$1	305	99	104	14.9999
GCGGG	chr5:32585559-32585832(+)$1	273	75	80	14.9999
gcggg	chr1:155023714-155024047(+)$1	333	21	26	14.9999
gcggg	chr15:90728080-90728340(+)$1	260	33	38	14.9999
GCGGG	chr1:9599444-9599711(+)$1	267	142	147	14.9999
GCGGG	chr13:28195921-28196200(+)$1	279	0	5	14.9999
GCGGG	chrX:154033600-154033844(-)$1	244	27	32	14.9999
GCGGG	chr3:142838548-142838814(+)$1	266	87	92	14.9999
GCGGG	chr1:26606529-26606795(+)$1	266	3	8	14.9999
GCGGG	chr6:31926567-31926825(-)$1	258	110	115	14.9999
GCGGG	chr15:77224048-77224306(+)$1	258	121	126	14.9999
GCGGG	chr1:32801599-32801846(-)$1	247	6	11	14.9999
GCGGG	chr19:41082686-41082993(+)$1	307	61	66	14.9999
GCGGG	chr15:44084428-44084662(+)$1	234	37	42	14.9999
GCGGG	chr7:99751390-99751622(+)$1	232	72	77	14.9999
GCGGG	chr17:49230843-49231115(+)$1	272	227	232	14.9999
GCGGG	chr19:5623109-5623440(+)$1	331	146	151	14.9999
GCGGG	chr8:17782119-17782392(+)$1	273	123	128	14.9999
gcggg	chr20:306459-306727(+)$1	268	3	8	14.9999
gcggg	chr11:3013382-3013637(-)$1	255	217	222	14.9999
GCGGG	chr2:27193470-27193730(+)$1	260	242	247	14.9999
gcggg	chr19:36631796-36632036(+)$1	240	160	165	14.9999
gcGGG	chr4:79697417-79697714(+)$1	297	73	78	14.9999
GCGGG	chr1:156307877-156308161(-)$1	284	66	71	14.9999
GCGGG	chr17:7210813-7211107(+)$1	294	45	50	14.9999
gcggg	chr17:47021942-47022202(-)$1	260	89	94	14.9999

#otherMatches

#Struct PSSM
c]fff	chr12:6602188-6602502(-)$1	314	26	31	14.9999
{BBEE	chr11:70244543-70244823(+)$1	280	13	18	14.9999
mhhhh	chr17:48796865-48797135(+)$1	270	140	145	14.9999
ggggg	chr4:151936253-151936479(-)$1	226	94	99	14.9999
FF{FF	chr5:138677524-138677772(+)$1	248	45	50	14.9999
"====	chr6:36410699-36410989(+)$1	290	68	73	14.9999
FFFFF	chr21:44527514-44527773(-)$1	259	65	70	14.9999
lllbb	chr17:900271-900659(+)$1	388	70	75	14.9999
c]ddd	chr3:25824649-25824911(-)$1	262	184	189	14.9999
ffffd	chr16:58163035-58163307(-)$1	272	29	34	14.9999
hh333	chr1:10532279-10532657(-)$1	378	336	341	14.9999
BB{BB	chr6:31783257-31783487(+)$1	230	13	18	14.9999
hheee	chr14:62229056-62229391(+)$1	335	30	35	14.9999
ddppp	chr3:48481712-48481923(+)$1	211	36	41	14.9999
b:GGG	chr3:196230270-196230591(-)$1	321	305	310	14.9999
qqqqa	chr2:177134193-177134453(+)$1	260	62	67	14.9999
bbfff	chr15:75074441-75074710(+)$1	269	230	235	14.9999
ccmmm	chr19:16770675-16770912(-)$1	237	62	67	14.9999
GGZZZ	chr16:85832915-85833253(-)$1	338	296	301	14.9999
=====	chr8:29940395-29940677(-)$1	282	225	230	14.9999
dbb[d	chr16:67260963-67261228(+)$1	265	5	10	14.9999
FFFFF	chr18:32924236-32924493(-)$1	257	174	179	14.9999
b22cc	chrX:55246755-55246986(+)$1	231	190	195	14.9999
ee]dd	chr1:156561473-156561777(+)$1	304	58	63	14.9999
hhiii	chr3:9833888-9834179(-)$1	291	115	120	14.9999
OOFFF	chr1:38273657-38273942(-)$1	285	20	25	14.9999
#dddd	chr1:179262872-179263172(+)$1	300	82	87	14.9999
:ffff	chr15:59225508-59225775(-)$1	267	85	90	14.9999
b]ddd	chr11:47574533-47574781(-)$1	248	128	133	14.9999
=====	chr19:46916594-46916927(-)$1	333	122	127	14.9999
eeeee	chr2:95787377-95787674(-)$1	297	184	189	14.9999
[cccc	chr16:103895-104156(+)$1	261	28	33	14.9999
]eeee	chr2:102314139-102314510(+)$1	371	90	95	14.9999
DDDDL	chr19:36486004-36486250(+)$1	246	36	41	14.9999
ddddp	chr10:99446753-99447070(-)$1	317	269	274	14.9999
ggggg	chr14:55493645-55493908(-)$1	263	73	78	14.9999
FFFgg	chr1:109419548-109419954(+)$1	406	9	14	14.9999
fffff	chr2:27193410-27193670(+)$1	260	35	40	14.9999
EEEEM	chr7:1199614-1199891(-)$1	277	7	12	14.9999
::fff	chr8:125551287-125551528(+)$1	241	202	207	14.9999
=ccce	chr11:77850503-77850758(-)$1	255	38	43	14.9999
bb!!h	chr2:58273799-58274104(+)$1	305	24	29	14.9999
hhhhh	chr2:55646539-55646815(-)$1	276	65	70	14.9999
llccc	chr3:133292480-133292806(+)$1	326	284	289	14.9999
EEEEE	chr8:22462166-22462457(+)$1	291	0	5	14.9999
hhhhc	chr1:54355285-54355566(-)$1	281	42	47	14.9999
DDDLL	chr6:8102597-8102855(-)$1	258	47	52	14.9999
eeeee	chr15:67546794-67547005(-)$1	211	156	161	14.9999
cc]gg	chr11:102323256-102323596(-)$1	340	116	121	14.9999
bbeee	chr19:36036499-36036746(+)$1	247	15	20	14.9999
fffff	chr1:155880943-155881256(-)$1	313	4	9	14.9999
dddd2	chr1:27248133-27248447(+)$1	314	36	41	14.9999
FFFFF	chr16:88870111-88870361(+)$1	250	33	38	14.9999
a]ggg	chr18:29522839-29523158(-)$1	319	53	58	14.9999
ffeee	chr9:101867380-101867685(+)$1	305	99	104	14.9999
bbeee	chr5:32585559-32585832(+)$1	273	75	80	14.9999
fffff	chr1:155023714-155024047(+)$1	333	21	26	14.9999
bb[dd	chr15:90728080-90728340(+)$1	260	33	38	14.9999
d22ee	chr1:9599444-9599711(+)$1	267	142	147	14.9999
::HHH	chr13:28195921-28196200(+)$1	279	0	5	14.9999
GGGGG	chrX:154033600-154033844(-)$1	244	27	32	14.9999
ii]aa	chr3:142838548-142838814(+)$1	266	87	92	14.9999
GGGGG	chr1:26606529-26606795(+)$1	266	3	8	14.9999
GKKEE	chr6:31926567-31926825(-)$1	258	110	115	14.9999
eee[b	chr15:77224048-77224306(+)$1	258	121	126	14.9999
ggggg	chr1:32801599-32801846(-)$1	247	6	11	14.9999
BEEEE	chr19:41082686-41082993(+)$1	307	61	66	14.9999
JJJJJ	chr15:44084428-44084662(+)$1	234	37	42	14.9999
b]iii	chr7:99751390-99751622(+)$1	232	72	77	14.9999
ccJJJ	chr17:49230843-49231115(+)$1	272	227	232	14.9999
bb]a]	chr19:5623109-5623440(+)$1	331	146	151	14.9999
J}EEE	chr8:17782119-17782392(+)$1	273	123	128	14.9999
:eeee	chr20:306459-306727(+)$1	268	3	8	14.9999
oeeee	chr11:3013382-3013637(-)$1	255	217	222	14.9999
a]fff	chr2:27193470-27193730(+)$1	260	242	247	14.9999
A}HHH	chr19:36631796-36632036(+)$1	240	160	165	14.9999
ff[a[	chr4:79697417-79697714(+)$1	297	73	78	14.9999
EEEEE	chr1:156307877-156308161(-)$1	284	66	71	14.9999
GGGGG	chr17:7210813-7211107(+)$1	294	45	50	14.9999
c]fff	chr17:47021942-47022202(-)$1	260	89	94	14.9999

#DB
).)))	chr12:6602188-6602502(-)$1	1	26	31	14.9999
.((((	chr11:70244543-70244823(+)$1	1	13	18	14.9999
.))))	chr17:48796865-48797135(+)$1	1	140	145	14.9999
)))))	chr4:151936253-151936479(-)$1	1	94	99	14.9999
((.((	chr5:138677524-138677772(+)$1	1	45	50	14.9999
.((((	chr6:36410699-36410989(+)$1	1	68	73	14.9999
(((((	chr21:44527514-44527773(-)$1	1	65	70	14.9999
...))	chr17:900271-900659(+)$1	1	70	75	14.9999
).)))	chr3:25824649-25824911(-)$1	1	184	189	14.9999
))))(	chr16:58163035-58163307(-)$1	1	29	34	14.9999
))...	chr1:10532279-10532657(-)$1	1	336	341	14.9999
((.((	chr6:31783257-31783487(+)$1	1	13	18	14.9999
(((((	chr14:62229056-62229391(+)$1	1	30	35	14.9999
((...	chr3:48481712-48481923(+)$1	1	36	41	14.9999
).)))	chr3:196230270-196230591(-)$1	1	305	310	14.9999
....)	chr2:177134193-177134453(+)$1	1	62	67	14.9999
)))))	chr15:75074441-75074710(+)$1	1	230	235	14.9999
((...	chr19:16770675-16770912(-)$1	1	62	67	14.9999
))...	chr16:85832915-85833253(-)$1	1	296	301	14.9999
)))))	chr8:29940395-29940677(-)$1	1	225	230	14.9999
(((.(	chr16:67260963-67261228(+)$1	1	5	10	14.9999
)))))	chr18:32924236-32924493(-)$1	1	174	179	14.9999
)..))	chrX:55246755-55246986(+)$1	1	190	195	14.9999
)).))	chr1:156561473-156561777(+)$1	1	58	63	14.9999
))(((	chr3:9833888-9834179(-)$1	1	115	120	14.9999
..(((	chr1:38273657-38273942(-)$1	1	20	25	14.9999
.((((	chr1:179262872-179263172(+)$1	1	82	87	14.9999
.((((	chr15:59225508-59225775(-)$1	1	85	90	14.9999
).)))	chr11:47574533-47574781(-)$1	1	128	133	14.9999
)))))	chr19:46916594-46916927(-)$1	1	122	127	14.9999
)))))	chr2:95787377-95787674(-)$1	1	184	189	14.9999
.((((	chr16:103895-104156(+)$1	1	28	33	14.9999
.))))	chr2:102314139-102314510(+)$1	1	90	95	14.9999
((((.	chr19:36486004-36486250(+)$1	1	36	41	14.9999
((((.	chr10:99446753-99447070(-)$1	1	269	274	14.9999
)))))	chr14:55493645-55493908(-)$1	1	73	78	14.9999
(((((	chr1:109419548-109419954(+)$1	1	9	14	14.9999
(((((	chr2:27193410-27193670(+)$1	1	35	40	14.9999
((((.	chr7:1199614-1199891(-)$1	1	7	12	14.9999
..(((	chr8:125551287-125551528(+)$1	1	202	207	14.9999
))))(	chr11:77850503-77850758(-)$1	1	38	43	14.9999
((..(	chr2:58273799-58274104(+)$1	1	24	29	14.9999
)))))	chr2:55646539-55646815(-)$1	1	65	70	14.9999
..)))	chr3:133292480-133292806(+)$1	1	284	289	14.9999
(((((	chr8:22462166-22462457(+)$1	1	0	5	14.9999
)))))	chr1:54355285-54355566(-)$1	1	42	47	14.9999
(((..	chr6:8102597-8102855(-)$1	1	47	52	14.9999
(((((	chr15:67546794-67547005(-)$1	1	156	161	14.9999
)).))	chr11:102323256-102323596(-)$1	1	116	121	14.9999
(((((	chr19:36036499-36036746(+)$1	1	15	20	14.9999
(((((	chr1:155880943-155881256(-)$1	1	4	9	14.9999
)))).	chr1:27248133-27248447(+)$1	1	36	41	14.9999
(((((	chr16:88870111-88870361(+)$1	1	33	38	14.9999
).)))	chr18:29522839-29523158(-)$1	1	53	58	14.9999
(((((	chr9:101867380-101867685(+)$1	1	99	104	14.9999
)))))	chr5:32585559-32585832(+)$1	1	75	80	14.9999
(((((	chr1:155023714-155024047(+)$1	1	21	26	14.9999
((.((	chr15:90728080-90728340(+)$1	1	33	38	14.9999
)..))	chr1:9599444-9599711(+)$1	1	142	147	14.9999
..(((	chr13:28195921-28196200(+)$1	1	0	5	14.9999
(((((	chrX:154033600-154033844(-)$1	1	27	32	14.9999
)).))	chr3:142838548-142838814(+)$1	1	87	92	14.9999
(((((	chr1:26606529-26606795(+)$1	1	3	8	14.9999
(..((	chr6:31926567-31926825(-)$1	1	110	115	14.9999
(((.(	chr15:77224048-77224306(+)$1	1	121	126	14.9999
(((((	chr1:32801599-32801846(-)$1	1	6	11	14.9999
(((((	chr19:41082686-41082993(+)$1	1	61	66	14.9999
(((((	chr15:44084428-44084662(+)$1	1	37	42	14.9999
).)))	chr7:99751390-99751622(+)$1	1	72	77	14.9999
)))))	chr17:49230843-49231115(+)$1	1	227	232	14.9999
)).).	chr19:5623109-5623440(+)$1	1	146	151	14.9999
).)))	chr8:17782119-17782392(+)$1	1	123	128	14.9999
.((((	chr20:306459-306727(+)$1	1	3	8	14.9999
.))))	chr11:3013382-3013637(-)$1	1	217	222	14.9999
).)))	chr2:27193470-27193730(+)$1	1	242	247	14.9999
).)))	chr19:36631796-36632036(+)$1	1	160	165	14.9999
((.(.	chr4:79697417-79697714(+)$1	1	73	78	14.9999
(((((	chr1:156307877-156308161(-)$1	1	66	71	14.9999
(((((	chr17:7210813-7211107(+)$1	1	45	50	14.9999
).)))	chr17:47021942-47022202(-)$1	1	89	94	14.9999

#PSSM
G : 0.86	g : 0.13	
C : 0.86	c : 0.13	
G : 0.87	g : 0.12	
G : 0.87	g : 0.12	
G : 0.87	g : 0.12	

#score	1199.9999999999995
#seq	80
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_CDS_m3_run2.nuc.txt

#NT
AUAUAUACACCAACAAA	chrM:14013-14242(+)$1	229	164	181	21.3947
ACGCUCACAACAAAACA	chr16:53190513-53190767(+)$1	254	18	35	21.3947
AAACUAACCUCAAAACA	chrM:8553-8755(+)$1	202	124	141	30.4736
AUAAUUACCCCCAUACU	chrM:8359-8570(+)$1	211	40	57	25.4736
AUAAUUACCCCCAUACU	chrM:8370-8574(+)$1	204	29	46	25.4736
AAACUAACCUCAAAACA	chrM:8594-8804(+)$1	210	83	100	30.4736
AUAUUUACCACAACACA	chrM:11952-12157(+)$1	205	35	52	35.2105
ACACUCACAACAAAACU	chrM:7579-7812(+)$1	233	139	156	22.8421
AAACUAACCUCAAAACA	chrM:8515-8753(+)$1	238	162	179	30.4736
ACCCUUAUCACAACACA	chrM:3756-3978(+)$1	222	40	57	23.3684
AUAUUUACCACAACACA	chrM:11916-12121(+)$1	205	71	88	35.2105
AUAUUUACCACAACACA	chrM:11921-12128(+)$1	207	66	83	35.2105
AUAUUUACCACAACACA	chrM:11940-12144(+)$1	204	47	64	35.2105
AUAUUUACCACAACACA	chrM:11900-12104(+)$1	204	87	104	35.2105
AAACUAACCUCAAAACA	chrM:8568-8774(+)$1	206	109	126	30.4736
AAACUAACCUCAAAACA	chrM:8558-8768(+)$1	210	119	136	30.4736
AUAUUUACCACAACACA	chrM:11968-12174(+)$1	206	19	36	35.2105
AAACUAACCUCAAAACA	chrM:8583-8788(+)$1	205	94	111	30.4736
AUAUUUACCACAACACA	chrM:11974-12177(+)$1	203	13	30	35.2105
AUAAUUACCCCCAUACU	chrM:8347-8551(+)$1	204	52	69	25.4736
AUAUUUACCACAACACA	chrM:11884-12097(+)$1	213	103	120	35.2105
AAACUAACCUCAAAACA	chrM:8589-8794(+)$1	205	88	105	30.4736
AUAAUUACCCCCAUACU	chrM:8339-8546(+)$1	207	60	77	25.4736
AUAUUUACCACAACACA	chrM:11897-12100(+)$1	203	90	107	35.2105
AUAUUUACCACAACACA	chrM:11946-12152(+)$1	206	41	58	35.2105
AAACUAACCUCAAAACA	chrM:8574-8783(+)$1	209	103	120	30.4736
AUAAUUACCCCCAUACU	chrM:8351-8559(+)$1	208	48	65	25.4736
AAACUAACCUCAAAACA	chrM:8555-8758(+)$1	203	122	139	30.4736
AUAUUUACCACAACACA	chrM:11966-12168(+)$1	202	21	38	35.2105
AUAAUUACCCCCAUACU	chrM:8374-8589(+)$1	215	25	42	25.4736
AUAUUUACCACAACACA	chrM:11904-12111(+)$1	207	83	100	35.2105
AUAUUUACCACAACACA	chrM:11868-12084(+)$1	216	119	136	35.2105
AUAAUUACCCCCAUACU	chrM:8306-8524(+)$1	218	93	110	25.4736
ACGCUCACAACAAAACA	chr16:53190317-53190561(+)$1	244	214	231	21.3947
AAACUAACCUCAAAACA	chrM:8604-8816(+)$1	212	73	90	30.4736
AAACUAACCUCAAAACA	chrM:8617-8824(+)$1	207	60	77	30.4736
AUAUAUACACCAACAAA	chrM:13996-14213(+)$1	217	181	198	21.3947

#otherMatches

#Struct PSSM
HHHHHHHH::::::::G	chrM:11977-12182(+)$1	205	10	27	35.2105
:::::::::::ddddnn	chrM:14013-14242(+)$1	229	164	181	21.3947
fffff:::::::eeeee	chr16:53190513-53190767(+)$1	254	18	35	21.3947
c^^^^^^^^^^^^^^^^	chrM:8553-8755(+)$1	202	124	141	30.4736
yyyyyyyyyyffffff:	chrM:8359-8570(+)$1	211	40	57	25.4736
yyyyyyyyyyffffff:	chrM:8370-8574(+)$1	204	29	46	25.4736
++++++++++++++++g	chrM:8594-8804(+)$1	210	83	100	30.4736
^^^^^^^^^^^^^^^^^	chrM:11952-12157(+)$1	205	35	52	35.2105
:::::::::::::::::	chrM:7579-7812(+)$1	233	139	156	22.8421
c^^^^^^^^^^^^^^^^	chrM:8515-8753(+)$1	238	162	179	30.4736
:::::::::::::::::	chrM:3756-3978(+)$1	222	40	57	23.3684
^^^^^^^^^^^^^^^^^	chrM:11916-12121(+)$1	205	71	88	35.2105
^^^^^^^^^^^^^^^^^	chrM:11921-12128(+)$1	207	66	83	35.2105
^^^^^^^^^^^^^^^^^	chrM:11940-12144(+)$1	204	47	64	35.2105
^^^^^^^^^^^^^^^^^	chrM:11900-12104(+)$1	204	87	104	35.2105
c^^^^^^^^^^^^^^^^	chrM:8568-8774(+)$1	206	109	126	30.4736
c^^^^^^^^^^^^^^^^	chrM:8558-8768(+)$1	210	119	136	30.4736
^^^^^^^^^^^^^^^^^	chrM:11968-12174(+)$1	206	19	36	35.2105
++++++++++++++++g	chrM:8583-8788(+)$1	205	94	111	30.4736
HHHHHHHH::::::::G	chrM:11974-12177(+)$1	203	13	30	35.2105
yyyyyyyyyyffffff:	chrM:8347-8551(+)$1	204	52	69	25.4736
::::::::::::::::G	chrM:11884-12097(+)$1	213	103	120	35.2105
++++++++++++++++g	chrM:8589-8794(+)$1	205	88	105	30.4736
yyyyyyyyyyffffff:	chrM:8339-8546(+)$1	207	60	77	25.4736
::::::::::::::::G	chrM:11897-12100(+)$1	203	90	107	35.2105
^^^^^^^^^^^^^^^^^	chrM:11946-12152(+)$1	206	41	58	35.2105
c^^^^^^^^^^^^^^^^	chrM:8574-8783(+)$1	209	103	120	30.4736
yyyyyyyyyyffffff:	chrM:8351-8559(+)$1	208	48	65	25.4736
c^^^^^^^^^^^^^^^^	chrM:8555-8758(+)$1	203	122	139	30.4736
^^^^^^^^^^^^^^^^^	chrM:11966-12168(+)$1	202	21	38	35.2105
yyyyyyyyyyffffff:	chrM:8374-8589(+)$1	215	25	42	25.4736
^^^^^^^^^^^^^^^^^	chrM:11904-12111(+)$1	207	83	100	35.2105
:::::::::::::::::	chrM:11868-12084(+)$1	216	119	136	35.2105
yyyyyyyyyyffffff:	chrM:8306-8524(+)$1	218	93	110	25.4736
fffff::::::::::::	chr16:53190317-53190561(+)$1	244	214	231	21.3947
++++++++++++++++g	chrM:8604-8816(+)$1	212	73	90	30.4736
++++++++++++++++g	chrM:8617-8824(+)$1	207	60	77	30.4736
^^^^^^^^^^^^^^^^^	chrM:13996-14213(+)$1	217	181	198	21.3947

#DB
((((((((........(	chrM:11977-12182(+)$1	1	10	27	35.2105
...........((((..	chrM:14013-14242(+)$1	1	164	181	21.3947
))))).......(((((	chr16:53190513-53190767(+)$1	1	18	35	21.3947
(................	chrM:8553-8755(+)$1	1	124	141	30.4736
..........)))))).	chrM:8359-8570(+)$1	1	40	57	25.4736
..........)))))).	chrM:8370-8574(+)$1	1	29	46	25.4736
................(	chrM:8594-8804(+)$1	1	83	100	30.4736
.................	chrM:11952-12157(+)$1	1	35	52	35.2105
.................	chrM:7579-7812(+)$1	1	139	156	22.8421
(................	chrM:8515-8753(+)$1	1	162	179	30.4736
.................	chrM:3756-3978(+)$1	1	40	57	23.3684
.................	chrM:11916-12121(+)$1	1	71	88	35.2105
.................	chrM:11921-12128(+)$1	1	66	83	35.2105
.................	chrM:11940-12144(+)$1	1	47	64	35.2105
.................	chrM:11900-12104(+)$1	1	87	104	35.2105
(................	chrM:8568-8774(+)$1	1	109	126	30.4736
(................	chrM:8558-8768(+)$1	1	119	136	30.4736
.................	chrM:11968-12174(+)$1	1	19	36	35.2105
................(	chrM:8583-8788(+)$1	1	94	111	30.4736
((((((((........(	chrM:11974-12177(+)$1	1	13	30	35.2105
..........)))))).	chrM:8347-8551(+)$1	1	52	69	25.4736
................(	chrM:11884-12097(+)$1	1	103	120	35.2105
................(	chrM:8589-8794(+)$1	1	88	105	30.4736
..........)))))).	chrM:8339-8546(+)$1	1	60	77	25.4736
................(	chrM:11897-12100(+)$1	1	90	107	35.2105
.................	chrM:11946-12152(+)$1	1	41	58	35.2105
(................	chrM:8574-8783(+)$1	1	103	120	30.4736
..........)))))).	chrM:8351-8559(+)$1	1	48	65	25.4736
(................	chrM:8555-8758(+)$1	1	122	139	30.4736
.................	chrM:11966-12168(+)$1	1	21	38	35.2105
..........)))))).	chrM:8374-8589(+)$1	1	25	42	25.4736
.................	chrM:11904-12111(+)$1	1	83	100	35.2105
.................	chrM:11868-12084(+)$1	1	119	136	35.2105
..........)))))).	chrM:8306-8524(+)$1	1	93	110	25.4736
)))))............	chr16:53190317-53190561(+)$1	1	214	231	21.3947
................(	chrM:8604-8816(+)$1	1	73	90	30.4736
................(	chrM:8617-8824(+)$1	1	60	77	30.4736
.................	chrM:13996-14213(+)$1	1	181	198	21.3947

#PSSM
A : 0.99	
U : 0.60	A : 0.28	C : 0.10	
A : 0.92	G : 0.05	C : 0.02	
U : 0.42	C : 0.39	A : 0.18	
U : 0.94	A : 0.05	
U : 0.63	A : 0.28	C : 0.07	
A : 0.99	
C : 0.97	U : 0.02	
C : 0.86	A : 0.13	
A : 0.47	U : 0.28	C : 0.23	
C : 0.99	
A : 0.81	C : 0.18	
A : 0.99	
C : 0.44	A : 0.36	U : 0.18	
A : 0.99	
C : 0.94	A : 0.05	
A : 0.78	U : 0.21	

#score	1138.2631578947355
#seq	38
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_transcript_m1_run2.nuc.txt

#NT
CUGGC	chr16:67978374-67978649(-)$1	275	14	19	11.2162
CUGGG	chr5:176022432-176022665(+)$1	233	42	47	11.8243
CUGGA	chr14:24030404-24030632(-)$1	228	4	9	11.5540
cuggg	chr6:24290052-24290307(-)$1	255	41	46	11.8243
CUGGU	chr3:184102704-184102974(+)$1	270	127	132	10.4054
CUGGU	chr12:7031134-7031426(+)$1	292	166	171	10.4054
CUGGA	chr9:35737947-35738233(-)$1	286	244	249	11.5540
CUGGG	chr17:37903192-37903451(+)$1	259	31	36	11.8243
CUGGG	chr6:160176286-160176642(+)$1	356	28	33	11.8243
CUGGA	chr19:1227753-1228040(+)$1	287	247	252	11.5540
CUGGG	chr11:67051584-67051913(+)$1	329	16	21	11.8243
CUGGC	chr9:117037878-117038098(+)$1	220	150	155	11.2162
cuggg	chr3:50112533-50112797(+)$1	264	28	33	11.8243
CUGGC	chr3:52521368-52521716(+)$1	348	201	206	11.2162
CUGGC	chr1:155288356-155288605(+)$1	249	68	73	11.2162
CUGGG	chr1:1248101-1248322(-)$1	221	208	213	11.8243
CUGGC	chr16:31200989-31201215(+)$1	226	48	53	11.2162
CUGGG	chr6:30887767-30887987(+)$1	220	12	17	11.8243
CUGGC	chr19:10794211-10794487(+)$1	276	110	115	11.2162
CUGGC	chr20:61472028-61472250(+)$1	222	161	166	11.2162
CUGGC	chr20:60897224-60897452(-)$1	228	92	97	11.2162
CUGGG	chr19:46338307-46338577(-)$1	270	76	81	11.8243
CUGGU	chr1:17981030-17981248(+)$1	218	109	114	10.4054
CUGGA	chr22:36627338-36627584(-)$1	246	163	168	11.5540
CUGGA	chr19:39959648-39959913(+)$1	265	139	144	11.5540
CUGGC	chr6:43473892-43474163(+)$1	271	174	179	11.2162
CUGGG	chr20:61461611-61461819(+)$1	208	35	40	11.8243
CUGGG	chr6:31698517-31698756(-)$1	239	145	150	11.8243
CUGGA	chr10:93754272-93754499(+)$1	227	33	38	11.5540
CUGGG	chr6:33382628-33382934(+)$1	306	23	28	11.8243
CUGGG	chr3:9986427-9986684(+)$1	257	4	9	11.8243
CUGGA	chr11:727505-727725(+)$1	220	141	146	11.5540
CUGGC	chr17:79780672-79780961(-)$1	289	88	93	11.2162
CUGGA	chrX:153670357-153670605(+)$1	248	33	38	11.5540
CUGGA	chr19:50363215-50363522(+)$1	307	198	203	11.5540
cuggc	chr3:184098404-184098651(+)$1	247	208	213	11.2162
CUGGC	chr6:43752781-43753018(+)$1	237	198	203	11.2162
CUGGG	chr7:100279627-100279858(-)$1	231	71	76	11.8243
CUGGG	chr8:144662233-144662477(-)$1	244	49	54	11.8243
CUGGC	chr1:155235550-155235795(-)$1	245	31	36	11.2162
CUGGA	chr3:197238631-197238906(-)$1	275	106	111	11.5540
CUGGA	chr17:7127205-7127478(+)$1	273	85	90	11.5540
CUGGC	chr19:14519867-14520097(-)$1	230	14	19	11.2162
CUGGA	chr6:30698689-30698977(-)$1	288	24	29	11.5540
CUGGG	chr17:80879301-80879545(+)$1	244	46	51	11.8243
CUGGG	chr19:10501846-10502128(-)$1	282	19	24	11.8243
CUGGA	chr8:145740612-145740898(-)$1	286	20	25	11.5540
CUGGG	chr17:74383678-74383932(+)$1	254	151	156	11.8243
CUGGA	chr17:37881867-37882174(+)$1	307	265	270	11.5540
CUGGC	chr20:57275970-57276243(+)$1	273	142	147	11.2162
CUGGU	chr16:67976671-67976901(-)$1	230	63	68	10.4054
CUGGC	chr19:56671380-56671615(+)$1	235	174	179	11.2162
CUGGC	chr14:24909335-24909591(-)$1	256	12	17	11.2162
CUGGU	chr19:45650224-45650489(+)$1	265	9	14	10.4054
cugga	chr2:118676933-118677197(-)$1	264	221	226	11.5540
CUGGG	chr13:52707724-52707978(-)$1	254	132	137	11.8243
CUGGA	chr2:74588617-74588864(-)$1	247	70	75	11.5540
CUGGG	chr11:62457808-62458073(-)$1	265	14	19	11.8243
CUGGA	chr3:127789544-127789838(+)$1	294	136	141	11.5540
CUGGG	chr16:66754765-66755104(-)$1	339	247	252	11.8243
CUGGC	chr19:1064062-1064300(+)$1	238	128	133	11.2162
CUGGA	chr14:24648189-24648430(+)$1	241	116	121	11.5540
CUGGA	chr8:145618436-145618679(-)$1	243	102	107	11.5540
CUGGG	chr1:1562602-1562897(+)$1	295	121	126	11.8243
CUGGG	chr20:61457455-61457663(+)$1	208	38	43	11.8243
CUGGG	chr3:48454455-48454674(-)$1	219	23	28	11.8243
CUGGG	chr16:70696767-70697006(-)$1	239	196	201	11.8243
cugga	chr9:117063463-117063670(+)$1	207	44	49	11.5540
CUGGA	chr2:97270414-97270701(-)$1	287	42	47	11.5540
CUGGA	chr7:102065456-102065740(+)$1	284	124	129	11.5540
CUGGU	chr10:101603527-101603738(+)$1	211	13	18	10.4054
CUGGG	chr17:37817139-37817422(+)$1	283	215	220	11.8243
CUGGA	chr17:73569000-73569281(+)$1	281	145	150	11.5540

#otherMatches

#Struct PSSM
EEEEE	chr22:31323982-31324260(-)$1	278	14	19	11.8243
ffff[	chr16:67978374-67978649(-)$1	275	14	19	11.2162
:ffff	chr5:176022432-176022665(+)$1	233	42	47	11.8243
ddddn	chr14:24030404-24030632(-)$1	228	4	9	11.5540
KKIII	chr6:24290052-24290307(-)$1	255	41	46	11.8243
fff[d	chr3:184102704-184102974(+)$1	270	127	132	10.4054
ff:::	chr12:7031134-7031426(+)$1	292	166	171	10.4054
::bb[	chr9:35737947-35738233(-)$1	286	244	249	11.5540
44eee	chr17:37903192-37903451(+)$1	259	31	36	11.8243
fffff	chr6:160176286-160176642(+)$1	356	28	33	11.8243
CCbbl	chr19:1227753-1228040(+)$1	287	247	252	11.5540
fffff	chr11:67051584-67051913(+)$1	329	16	21	11.8243
fffff	chr9:117037878-117038098(+)$1	220	150	155	11.2162
CCNNN	chr3:50112533-50112797(+)$1	264	28	33	11.8243
ffeee	chr3:52521368-52521716(+)$1	348	201	206	11.2162
eeeed	chr1:155288356-155288605(+)$1	249	68	73	11.2162
dd]ee	chr1:1248101-1248322(-)$1	221	208	213	11.8243
ccc::	chr16:31200989-31201215(+)$1	226	48	53	11.2162
GG{DD	chr6:30887767-30887987(+)$1	220	12	17	11.8243
FFFFe	chr19:10794211-10794487(+)$1	276	110	115	11.2162
bb]ee	chr20:61472028-61472250(+)$1	222	161	166	11.2162
]dddd	chr20:60897224-60897452(-)$1	228	92	97	11.2162
FFFFF	chr19:46338307-46338577(-)$1	270	76	81	11.8243
GGG::	chr1:17981030-17981248(+)$1	218	109	114	10.4054
ZZDDD	chr22:36627338-36627584(-)$1	246	163	168	11.5540
CCZZZ	chr19:39959648-39959913(+)$1	265	139	144	11.5540
55555	chr6:43473892-43474163(+)$1	271	174	179	11.2162
:::cc	chr20:61461611-61461819(+)$1	208	35	40	11.8243
mmccc	chr6:31698517-31698756(-)$1	239	145	150	11.8243
ccc::	chr10:93754272-93754499(+)$1	227	33	38	11.5540
DD{FF	chr6:33382628-33382934(+)$1	306	23	28	11.8243
LFFFF	chr3:9986427-9986684(+)$1	257	4	9	11.8243
==[a[	chr11:727505-727725(+)$1	220	141	146	11.5540
""ccc	chr17:79780672-79780961(-)$1	289	88	93	11.2162
ddd33	chrX:153670357-153670605(+)$1	248	33	38	11.5540
FFFFF	chr19:50363215-50363522(+)$1	307	198	203	11.5540
22ccc	chr3:184098404-184098651(+)$1	247	208	213	11.2162
hhhhh	chr6:43752781-43753018(+)$1	237	198	203	11.2162
cc]ee	chr7:100279627-100279858(-)$1	231	71	76	11.8243
FFFFF	chr8:144662233-144662477(-)$1	244	49	54	11.8243
3eeee	chr1:155235550-155235795(-)$1	245	31	36	11.2162
+eeee	chr3:197238631-197238906(-)$1	275	106	111	11.5540
EEEE:	chr17:7127205-7127478(+)$1	273	85	90	11.5540
DDDD{	chr19:14519867-14520097(-)$1	230	14	19	11.2162
DDDDK	chr6:30698689-30698977(-)$1	288	24	29	11.5540
E::::	chr17:80879301-80879545(+)$1	244	46	51	11.8243
GGGGG	chr19:10501846-10502128(-)$1	282	19	24	11.8243
:cccn	chr8:145740612-145740898(-)$1	286	20	25	11.5540
ccccc	chr17:74383678-74383932(+)$1	254	151	156	11.8243
::::B	chr17:37881867-37882174(+)$1	307	265	270	11.5540
33ccc	chr20:57275970-57276243(+)$1	273	142	147	11.2162
lleee	chr16:67976671-67976901(-)$1	230	63	68	10.4054
b]eee	chr19:56671380-56671615(+)$1	235	174	179	11.2162
CCEEE	chr14:24909335-24909591(-)$1	256	12	17	11.2162
fff[c	chr19:45650224-45650489(+)$1	265	9	14	10.4054
hhhhh	chr2:118676933-118677197(-)$1	264	221	226	11.5540
eeeee	chr13:52707724-52707978(-)$1	254	132	137	11.8243
::ddd	chr2:74588617-74588864(-)$1	247	70	75	11.5540
ggggg	chr11:62457808-62458073(-)$1	265	14	19	11.8243
GGGKK	chr3:127789544-127789838(+)$1	294	136	141	11.5540
mffff	chr16:66754765-66755104(-)$1	339	247	252	11.8243
GGGGG	chr19:1064062-1064300(+)$1	238	128	133	11.2162
ddddl	chr14:24648189-24648430(+)$1	241	116	121	11.5540
ooooo	chr8:145618436-145618679(-)$1	243	102	107	11.5540
gggll	chr1:1562602-1562897(+)$1	295	121	126	11.8243
CCKKC	chr20:61457455-61457663(+)$1	208	38	43	11.8243
ggggo	chr3:48454455-48454674(-)$1	219	23	28	11.8243
mmmmd	chr16:70696767-70697006(-)$1	239	196	201	11.8243
ooeee	chr9:117063463-117063670(+)$1	207	44	49	11.5540
E{GGG	chr2:97270414-97270701(-)$1	287	42	47	11.5540
dd###	chr7:102065456-102065740(+)$1	284	124	129	11.5540
Cgggg	chr10:101603527-101603738(+)$1	211	13	18	10.4054
}DDDD	chr17:37817139-37817422(+)$1	283	215	220	11.8243
FF:::	chr17:73569000-73569281(+)$1	281	145	150	11.5540

#DB
(((((	chr22:31323982-31324260(-)$1	1	14	19	11.8243
((((.	chr16:67978374-67978649(-)$1	1	14	19	11.2162
.((((	chr5:176022432-176022665(+)$1	1	42	47	11.8243
((((.	chr14:24030404-24030632(-)$1	1	4	9	11.5540
..(((	chr6:24290052-24290307(-)$1	1	41	46	11.8243
(((.(	chr3:184102704-184102974(+)$1	1	127	132	10.4054
))...	chr12:7031134-7031426(+)$1	1	166	171	10.4054
..((.	chr9:35737947-35738233(-)$1	1	244	249	11.5540
..)))	chr17:37903192-37903451(+)$1	1	31	36	11.8243
(((((	chr6:160176286-160176642(+)$1	1	28	33	11.8243
))((.	chr19:1227753-1228040(+)$1	1	247	252	11.5540
)))))	chr11:67051584-67051913(+)$1	1	16	21	11.8243
)))))	chr9:117037878-117038098(+)$1	1	150	155	11.2162
((...	chr3:50112533-50112797(+)$1	1	28	33	11.8243
(((((	chr3:52521368-52521716(+)$1	1	201	206	11.2162
)))))	chr1:155288356-155288605(+)$1	1	68	73	11.2162
)).))	chr1:1248101-1248322(-)$1	1	208	213	11.8243
)))..	chr16:31200989-31201215(+)$1	1	48	53	11.2162
((.((	chr6:30887767-30887987(+)$1	1	12	17	11.8243
(((((	chr19:10794211-10794487(+)$1	1	110	115	11.2162
)).))	chr20:61472028-61472250(+)$1	1	161	166	11.2162
.))))	chr20:60897224-60897452(-)$1	1	92	97	11.2162
(((((	chr19:46338307-46338577(-)$1	1	76	81	11.8243
(((..	chr1:17981030-17981248(+)$1	1	109	114	10.4054
..)))	chr22:36627338-36627584(-)$1	1	163	168	11.5540
))...	chr19:39959648-39959913(+)$1	1	139	144	11.5540
.....	chr6:43473892-43474163(+)$1	1	174	179	11.2162
...((	chr20:61461611-61461819(+)$1	1	35	40	11.8243
..)))	chr6:31698517-31698756(-)$1	1	145	150	11.8243
)))..	chr10:93754272-93754499(+)$1	1	33	38	11.5540
((.((	chr6:33382628-33382934(+)$1	1	23	28	11.8243
.((((	chr3:9986427-9986684(+)$1	1	4	9	11.8243
((.(.	chr11:727505-727725(+)$1	1	141	146	11.5540
..(((	chr17:79780672-79780961(-)$1	1	88	93	11.2162
)))..	chrX:153670357-153670605(+)$1	1	33	38	11.5540
)))))	chr19:50363215-50363522(+)$1	1	198	203	11.5540
..)))	chr3:184098404-184098651(+)$1	1	208	213	11.2162
)))))	chr6:43752781-43753018(+)$1	1	198	203	11.2162
)).))	chr7:100279627-100279858(-)$1	1	71	76	11.8243
(((((	chr8:144662233-144662477(-)$1	1	49	54	11.8243
.))))	chr1:155235550-155235795(-)$1	1	31	36	11.2162
.((((	chr3:197238631-197238906(-)$1	1	106	111	11.5540
)))).	chr17:7127205-7127478(+)$1	1	85	90	11.5540
((((.	chr19:14519867-14520097(-)$1	1	14	19	11.2162
((((.	chr6:30698689-30698977(-)$1	1	24	29	11.5540
(....	chr17:80879301-80879545(+)$1	1	46	51	11.8243
(((((	chr19:10501846-10502128(-)$1	1	19	24	11.8243
.(((.	chr8:145740612-145740898(-)$1	1	20	25	11.5540
(((((	chr17:74383678-74383932(+)$1	1	151	156	11.8243
....)	chr17:37881867-37882174(+)$1	1	265	270	11.5540
..)))	chr20:57275970-57276243(+)$1	1	142	147	11.2162
..)))	chr16:67976671-67976901(-)$1	1	63	68	10.4054
).)))	chr19:56671380-56671615(+)$1	1	174	179	11.2162
(((((	chr14:24909335-24909591(-)$1	1	12	17	11.2162
(((.(	chr19:45650224-45650489(+)$1	1	9	14	10.4054
)))))	chr2:118676933-118677197(-)$1	1	221	226	11.5540
)))))	chr13:52707724-52707978(-)$1	1	132	137	11.8243
..(((	chr2:74588617-74588864(-)$1	1	70	75	11.5540
(((((	chr11:62457808-62458073(-)$1	1	14	19	11.8243
(((..	chr3:127789544-127789838(+)$1	1	136	141	11.5540
.))))	chr16:66754765-66755104(-)$1	1	247	252	11.8243
)))))	chr19:1064062-1064300(+)$1	1	128	133	11.2162
((((.	chr14:24648189-24648430(+)$1	1	116	121	11.5540
.....	chr8:145618436-145618679(-)$1	1	102	107	11.5540
(((..	chr1:1562602-1562897(+)$1	1	121	126	11.8243
((..(	chr20:61457455-61457663(+)$1	1	38	43	11.8243
((((.	chr3:48454455-48454674(-)$1	1	23	28	11.8243
....)	chr16:70696767-70697006(-)$1	1	196	201	11.8243
..)))	chr9:117063463-117063670(+)$1	1	44	49	11.5540
(.(((	chr2:97270414-97270701(-)$1	1	42	47	11.5540
((...	chr7:102065456-102065740(+)$1	1	124	129	11.5540
(((((	chr10:101603527-101603738(+)$1	1	13	18	10.4054
.))))	chr17:37817139-37817422(+)$1	1	215	220	11.8243
))...	chr17:73569000-73569281(+)$1	1	145	150	11.5540

#PSSM
C : 0.93	c : 0.06	
U : 0.93	u : 0.06	
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
G : 0.33	A : 0.28	C : 0.22	U : 0.08	g : 0.02	a : 0.02	c : 0.01	

#score	849.3243243243236
#seq	74
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_transcript_m2_run1.nuc.txt

#NT
AAAUGAAUCUGAAUCCUAUGGAUUCACCUCAUUCCCCUAUAUCCCCUCUGCCACCAACACUCAGCCCUCAGCCACGAGGUCAGGAAACAGAGAGUUUGGACCCACCAUCGGUCCCUGUGAAUCCAGCCCUUUAUGGAAAUGGACUAGAACUCCAGCAGUUGUCUACUCUGGAUGACAGAACUGUCCUCGUAGGCCAAAGACUGCCUCUCAUGGCAGAGGUCAGCGAGACAGCCUUAUAUUGUGGGAUUAGGCCCUCGAACCCGGAGUCAUCAGAAA	chr12:116446319-116446646(-)$1	327	44	320	363.0000

#otherMatches

#Struct PSSM
!cccooooooccc22bb]hhhhhhhh22dddd:ffffffnnnnnffffff:::::::::::EEEEEZZZGGGGGGG::CCCAKKBBKKEEEEEDDDDbb!!bbhhhhhhhh^^^^^^^^^^^^^^^^^^^^hhhhhhhh]bb22bb::::ggggggg[ggggggg!!ccctttttttttttcccggggggg4444ggggggg:DDDD~~~~EEEEEYYBBYYA}CCCBB}EEEEE::ffffff"""ddddqqqqqqqqdddd4444ffffff::::	chr16:9016971-9017291(-)$1	320	42	318	363.0000
:eeeee"""ggggggglllggggggg22eeeee:::::::::::IIIIIIIIIQQQQQQQQCCCOOOOOOCCCFFFFFF{CCC:ddddnnnnnddddeeeeepppppppeeeeeDDDD{A:dddd!!bbnnnnnbb333dddd:::::::eeeee[cccnnnnnccceeeeeA}DDDDYYCCC}FFFFFF}CCC______CCC|||||||IIIIIIIII:::bboooooobbCCC}DDDD}EEEEEZZZDDDDcccpppppppccc:eeeeeoooo	chr12:116446319-116446646(-)$1	327	44	320	363.0000

#DB
.(((......)))..)).))))))))..)))).((((((.....))))))...........)))))...)))))))..((((..((..(((((((((((..((((((((((....................)))))))).))..))....(((((((.(((((((..(((...........))))))))))....))))))).))))....)))))..))..).))))).)))))..((((((...((((........))))....))))))....	chr16:9016971-9017291(-)$1	1	42	318	363.0000
.(((((...(((((((...)))))))..)))))...........(((((((((........(((......(((((((((.(((.((((.....))))(((((.......)))))((((.(.((((..((.....))...)))).......(((((.(((.....))))))))).))))..))).)))))).)))......))).......)))))))))...((......))))).)))).)))))...))))(((.......))).(((((....	chr12:116446319-116446646(-)$1	1	44	320	363.0000

#PSSM
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	

#score	726.0
#seq	2
#width	276
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_transcript_m2_run1.nuc.txt

#NT
GGGGGCGGGGA	chr3:53079821-53080084(-)$1	263	55	66	21.4920
GGGGGCCUGGC	chr9:102861470-102861802(+)$1	332	238	249	17.2063
GGGCGCGGGGG	chr5:72921920-72922185(+)$1	265	171	182	17.8412
gggcgcgcggc	chr8:74658893-74659206(-)$1	313	12	23	17.2063
gggcgccgggc	chr5:134734760-134735044(-)$1	284	19	30	17.2857
GGAGGCGGGGG	chr2:179315596-179315894(-)$1	298	15	26	17.5238
GUGGGCGGGGU	chr2:61244752-61245035(+)$1	283	27	38	17.8412
ugcggcggggc	chr16:1876640-1876924(-)$1	284	217	228	17.5238
AGGGGCGGGGC	chr2:85829624-85829894(-)$1	270	49	60	21.6507
GGGAGCGGGGC	chr11:129765251-129765546(-)$1	295	266	277	20.7777
UUGGGCGGGGC	chr11:126138947-126139299(+)$1	352	18	29	18.1587
GGGCGCGGGUC	chr7:1177722-1177974(-)$1	252	67	78	16.8888
GGGGGCGGGCG	chr1:84543402-84543699(-)$1	297	85	96	17.6031
GUGGGCGGGGC	chr2:241906708-241906960(-)$1	252	50	61	21.4126
GGGGGCGGGGC	chr14:58764659-58764940(-)$1	281	47	58	24.9047
AGGGGCAGGGC	chr20:56136059-56136371(+)$1	312	49	60	17.3650
GGUGGCGGGGA	chr11:86013207-86013570(+)$1	363	297	308	17.2857
GACGGCGGGGC	chr2:27294365-27294615(-)$1	250	0	11	17.1269
GGGGAAggggc	chr1:169862835-169863161(-)$1	326	284	295	16.8095
GGGGCCGGGGC	chr8:95961679-95962025(+)$1	346	186	197	20.6190
AGAGGCGGGGC	chr11:125496541-125496774(+)$1	233	31	42	17.5238
AGGGGCGAGGC	chr4:104119319-104119642(-)$1	323	281	292	17.9206
GGGGGCGGGGC	chr7:65338175-65338439(+)$1	264	10	21	24.9047
gggggccgggc	chr17:56065347-56065628(-)$1	281	227	238	21.0952
gggggagcggc	chr9:134615215-134615517(-)$1	302	83	94	16.9682
gggggugaggc	chr19:49458113-49458319(+)$1	206	102	113	16.8888
GAGGGCGGGGA	chr3:15901016-15901355(-)$1	339	184	195	17.8412
gcgggcgggcc	chr3:184079417-184079701(+)$1	284	31	42	17.1269
GGGGGCGUGGG	chr16:20817750-20818041(+)$1	291	173	184	17.7619
gggggcgggcc	chr2:43453590-43453845(-)$1	255	139	150	20.8571
GUGGGCGUGGC	chr5:145214688-145215011(-)$1	323	12	23	17.5238
gggggcgggcC	chr19:15442536-15442800(-)$1	264	43	54	20.8571
gggggccgggc	chrX:153285198-153285450(-)$1	252	194	205	21.0952
aggggcggggc	chr6:2245931-2246210(+)$1	279	48	59	21.6507
GGGGCCGAGGC	chr19:5719784-5720053(-)$1	269	73	84	16.8888
UGGGGCGGGGC	chr17:73840441-73840733(-)$1	292	50	61	21.6507
GGGGGAGGGUC	chr1:154600224-154600500(-)$1	276	101	112	16.6507
GCGGGCCGGGC	chr16:50582331-50582572(+)$1	241	83	94	17.3650
GGGGGAGGGGC	chr3:51533784-51534091(-)$1	307	295	306	20.8571
GGCGGCGGGGA	chr6:37225453-37225720(+)$1	267	135	146	17.3650
GGGGACGGGAC	chr5:126365970-126366345(-)$1	375	362	373	16.6507
GGGGGCGAGGG	chr7:2672890-2673145(+)$1	255	224	235	17.9206
GGGAGCGGGGU	chr11:65381511-65381784(-)$1	273	83	94	17.2063
AAGGGCGGGGC	chr14:31926454-31926739(-)$1	285	8	19	17.9999
UGGGGCGGGGU	chr2:214149072-214149355(+)$1	283	12	23	18.0793
GGGGAAGGGGC	chr9:86322702-86322977(-)$1	275	93	104	16.8095
gagggcggggc	chr1:155100250-155100497(+)$1	247	38	49	21.2539
GGGGACGGGAC	chr1:100435511-100435814(+)$1	303	18	29	16.6507
GGUGGCGGGGC	chr5:131132498-131132809(-)$1	311	121	132	20.6984
gggggcggggc	chr16:71757631-71757886(-)$1	255	26	37	24.9047
ggaggcggggc	chr14:71787082-71787369(+)$1	287	42	53	20.7777
GCGCGCGGGGC	chr1:155532308-155532637(-)$1	329	170	181	17.3650
GGGCGCCGGGC	chr22:44319637-44319888(+)$1	251	60	71	17.2857
GGGUGCGGGGA	chr12:72057439-72057698(-)$1	259	154	165	17.2857
UGGGGCGGGGG	chr15:93425951-93426264(+)$1	313	45	56	18.3968
GGGGGCGCGGG	chr19:18632630-18632970(-)$1	340	77	88	17.7619
CUGGGCGGGGC	chr2:18741561-18741873(-)$1	312	71	82	17.9999
GUGGACGGGGC	chr12:133562898-133563209(+)$1	311	240	251	17.3650
CGGGGCGGGGC	chr16:89894836-89895181(+)$1	345	31	42	21.4920
cggggcggggc	chr3:45730808-45731097(+)$1	289	103	114	21.4920
UGgggcggggc	chr15:41099832-41100123(+)$1	291	66	77	21.6507
CGGGGCCGGGC	chr2:110371260-110371606(-)$1	346	155	166	17.6825

#otherMatches

#Struct PSSM
HH{FFFFFFBB	chr22:24407831-24408105(+)$1	274	26	37	16.8888
hbbeeeee]a:	chr3:53079821-53080084(-)$1	263	55	66	21.4920
ggggggg[ccc	chr9:102861470-102861802(+)$1	332	238	249	17.2063
c22ccc:eeee	chr5:72921920-72922185(+)$1	265	171	182	17.8412
FFFFBBbb!!c	chr8:74658893-74659206(-)$1	313	12	23	17.2063
""eeeee[aoo	chr5:134734760-134735044(-)$1	284	19	30	17.2857
cc[eeeeebb!	chr2:179315596-179315894(-)$1	298	15	26	17.5238
eeccc[ggggg	chr2:61244752-61245035(+)$1	283	27	38	17.8412
===eeeee22f	chr16:1876640-1876924(-)$1	284	217	228	17.5238
:EEEEE{EEEE	chr2:85829624-85829894(-)$1	270	49	60	21.6507
DBB}GGGGGGG	chr11:129765251-129765546(-)$1	295	266	277	20.7777
oddddffffff	chr11:126138947-126139299(+)$1	352	18	29	18.1587
ddd]ddddccc	chr7:1177722-1177974(-)$1	252	67	78	16.8888
FFFFbb[ccc!	chr1:84543402-84543699(-)$1	297	85	96	17.6031
GG{AA{GGGGG	chr2:241906708-241906960(-)$1	252	50	61	21.4126
OOBB{BB{CCC	chr14:58764659-58764940(-)$1	281	47	58	24.9047
ehhhhhhhhCC	chr20:56136059-56136371(+)$1	312	49	60	17.3650
iiiiiiii:JJ	chr11:86013207-86013570(+)$1	363	297	308	17.2857
::cccffffff	chr2:27294365-27294615(-)$1	250	0	11	17.1269
hhhhh]iiiii	chr1:169862835-169863161(-)$1	326	284	295	16.8095
::cccmmmmcc	chr8:95961679-95962025(+)$1	346	186	197	20.6190
JJJJJJJJJJ:	chr11:125496541-125496774(+)$1	233	31	42	17.5238
qffffff22cc	chr4:104119319-104119642(-)$1	323	281	292	17.9206
[eeeee!!ggg	chr7:65338175-65338439(+)$1	264	10	21	24.9047
EA}BBCCCDDD	chr17:56065347-56065628(-)$1	281	227	238	21.0952
22bb22eeeee	chr9:134615215-134615517(-)$1	302	83	94	16.9682
"""ccc[ccc[	chr19:49458113-49458319(+)$1	206	102	113	16.8888
ffffffnnnnn	chr3:15901016-15901355(-)$1	339	184	195	17.8412
cc[ggggggg[	chr3:184079417-184079701(+)$1	284	31	42	17.1269
KKFFFFFFfff	chr16:20817750-20818041(+)$1	291	173	184	17.7619
f]eeeee]fff	chr2:43453590-43453845(-)$1	255	139	150	20.8571
===========	chr5:145214688-145215011(-)$1	323	12	23	17.5238
CCCCCCA{BBB	chr19:15442536-15442800(-)$1	264	43	54	20.8571
ggBBbb[dddd	chrX:153285198-153285450(-)$1	252	194	205	21.0952
===========	chr6:2245931-2246210(+)$1	279	48	59	21.6507
####iiiiiii	chr19:5719784-5720053(-)$1	269	73	84	16.8888
fffffffffoo	chr17:73840441-73840733(-)$1	292	50	61	21.6507
eggggggg[dd	chr1:154600224-154600500(-)$1	276	101	112	16.6507
f[dddd[ffff	chr16:50582331-50582572(+)$1	241	83	94	17.3650
FF}AYYEEEEE	chr3:51533784-51534091(-)$1	307	295	306	20.8571
CCC{A{GGGGG	chr6:37225453-37225720(+)$1	267	135	146	17.3650
GGGGG}BB:::	chr5:126365970-126366345(-)$1	375	362	373	16.6507
hhhhhhh4444	chr7:2672890-2673145(+)$1	255	224	235	17.9206
5dddd:eeeee	chr11:65381511-65381784(-)$1	273	83	94	17.2063
meeeee::A{I	chr14:31926454-31926739(-)$1	285	8	19	17.9999
ddddbb"""ff	chr2:214149072-214149355(+)$1	283	12	23	18.0793
fff"""eeeee	chr9:86322702-86322977(-)$1	275	93	104	16.8095
KKDDDD{HHHH	chr1:155100250-155100497(+)$1	247	38	49	21.2539
ee!!ccc[fff	chr1:100435511-100435814(+)$1	303	18	29	16.6507
bb]hhhhhhhh	chr5:131132498-131132809(-)$1	311	121	132	20.6984
ff[ccc[bbmm	chr16:71757631-71757886(-)$1	255	26	37	24.9047
EEEE{AHHHHH	chr14:71787082-71787369(+)$1	287	42	53	20.7777
IIII}CCC}BB	chr1:155532308-155532637(-)$1	329	170	181	17.3650
ffffff[ccc[	chr22:44319637-44319888(+)$1	251	60	71	17.2857
:GGGGGGG:::	chr12:72057439-72057698(-)$1	259	154	165	17.2857
GGdddd^^^^^	chr15:93425951-93426264(+)$1	313	45	56	18.3968
EEEEHHHHHHH	chr19:18632630-18632970(-)$1	340	77	88	17.7619
bb:ffffff[d	chr2:18741561-18741873(-)$1	312	71	82	17.9999
neeeee]aHHH	chr12:133562898-133563209(+)$1	311	240	251	17.3650
]==========	chr16:89894836-89895181(+)$1	345	31	42	21.4920
c22dddd]eee	chr3:45730808-45731097(+)$1	289	103	114	21.4920
c22a]bb]ccc	chr15:41099832-41100123(+)$1	291	66	77	21.6507
YJJJJJJJJJJ	chr2:110371260-110371606(-)$1	346	155	166	17.6825

#DB
((.((((((((	chr22:24407831-24408105(+)$1	1	26	37	16.8888
)))))))).).	chr3:53079821-53080084(-)$1	1	55	66	21.4920
(((((((.(((	chr9:102861470-102861802(+)$1	1	238	249	17.2063
)..))).((((	chr5:72921920-72922185(+)$1	1	171	182	17.8412
((((((((..(	chr8:74658893-74659206(-)$1	1	12	23	17.2063
..(((((.(..	chr5:134734760-134735044(-)$1	1	19	30	17.2857
((.(((((((.	chr2:179315596-179315894(-)$1	1	15	26	17.5238
(((((.(((((	chr2:61244752-61245035(+)$1	1	27	38	17.8412
))))))))..)	chr16:1876640-1876924(-)$1	1	217	228	17.5238
.(((((.((((	chr2:85829624-85829894(-)$1	1	49	60	21.6507
))).)))))))	chr11:129765251-129765546(-)$1	1	266	277	20.7777
.))))((((((	chr11:126138947-126139299(+)$1	1	18	29	18.1587
))).)))))))	chr7:1177722-1177974(-)$1	1	67	78	16.8888
((((((.(((.	chr1:84543402-84543699(-)$1	1	85	96	17.6031
((.((.(((((	chr2:241906708-241906960(-)$1	1	50	61	21.4126
..((.((.(((	chr14:58764659-58764940(-)$1	1	47	58	24.9047
)))))))))((	chr20:56136059-56136371(+)$1	1	49	60	17.3650
)))))))).))	chr11:86013207-86013570(+)$1	1	297	308	17.2857
..(((((((((	chr2:27294365-27294615(-)$1	1	0	11	17.1269
))))).)))))	chr1:169862835-169863161(-)$1	1	284	295	16.8095
..(((....))	chr8:95961679-95962025(+)$1	1	186	197	20.6190
((((((((((.	chr11:125496541-125496774(+)$1	1	31	42	17.5238
.))))))..))	chr4:104119319-104119642(-)$1	1	281	292	17.9206
.(((((..(((	chr7:65338175-65338439(+)$1	1	10	21	24.9047
)).))))))))	chr17:56065347-56065628(-)$1	1	227	238	21.0952
..))..)))))	chr9:134615215-134615517(-)$1	1	83	94	16.9682
...(((.(((.	chr19:49458113-49458319(+)$1	1	102	113	16.8888
((((((.....	chr3:15901016-15901355(-)$1	1	184	195	17.8412
((.(((((((.	chr3:184079417-184079701(+)$1	1	31	42	17.1269
..(((((((((	chr16:20817750-20818041(+)$1	1	173	184	17.7619
).))))).)))	chr2:43453590-43453845(-)$1	1	139	150	20.8571
(((((((((((	chr5:145214688-145215011(-)$1	1	12	23	17.5238
(((((((.(((	chr19:15442536-15442800(-)$1	1	43	54	20.8571
))))((.((((	chrX:153285198-153285450(-)$1	1	194	205	21.0952
)))))))))))	chr6:2245931-2246210(+)$1	1	48	59	21.6507
....(((((((	chr19:5719784-5720053(-)$1	1	73	84	16.8888
)))((((((..	chr17:73840441-73840733(-)$1	1	50	61	21.6507
)(((((((.((	chr1:154600224-154600500(-)$1	1	101	112	16.6507
(.((((.((((	chr16:50582331-50582572(+)$1	1	83	94	17.3650
)).)..)))))	chr3:51533784-51534091(-)$1	1	295	306	20.8571
(((.(.(((((	chr6:37225453-37225720(+)$1	1	135	146	17.3650
))))).))...	chr5:126365970-126366345(-)$1	1	362	373	16.6507
)))))))....	chr7:2672890-2673145(+)$1	1	224	235	17.9206
.)))).(((((	chr11:65381511-65381784(-)$1	1	83	94	17.2063
.)))))..(.(	chr14:31926454-31926739(-)$1	1	8	19	17.9999
((((((...((	chr2:214149072-214149355(+)$1	1	12	23	18.0793
(((...(((((	chr9:86322702-86322977(-)$1	1	93	104	16.8095
..((((.((((	chr1:155100250-155100497(+)$1	1	38	49	21.2539
((..(((.(((	chr1:100435511-100435814(+)$1	1	18	29	16.6507
)).))))))))	chr5:131132498-131132809(-)$1	1	121	132	20.6984
((.(((.((..	chr16:71757631-71757886(-)$1	1	26	37	24.9047
((((.((((((	chr14:71787082-71787369(+)$1	1	42	53	20.7777
)))).))).))	chr1:155532308-155532637(-)$1	1	170	181	17.3650
((((((.(((.	chr22:44319637-44319888(+)$1	1	60	71	17.2857
.(((((((...	chr12:72057439-72057698(-)$1	1	154	165	17.2857
((((((.....	chr15:93425951-93426264(+)$1	1	45	56	18.3968
(((((((((((	chr19:18632630-18632970(-)$1	1	77	88	17.7619
)).((((((.(	chr2:18741561-18741873(-)$1	1	71	82	17.9999
.))))).))))	chr12:133562898-133563209(+)$1	1	240	251	17.3650
.))))))))))	chr16:89894836-89895181(+)$1	1	31	42	21.4920
)..)))).)))	chr3:45730808-45731097(+)$1	1	103	114	21.4920
)..).)).)))	chr15:41099832-41100123(+)$1	1	66	77	21.6507
.))))))))))	chr2:110371260-110371606(-)$1	1	155	166	17.6825

#PSSM
G : 0.55	g : 0.19	A : 0.07	U : 0.07	C : 0.04	u : 0.01	a : 0.01	c : 0.01	
G : 0.58	g : 0.20	U : 0.09	A : 0.04	C : 0.03	c : 0.01	a : 0.01	
G : 0.65	g : 0.22	A : 0.03	U : 0.03	C : 0.03	c : 0.01	a : 0.01	
G : 0.63	g : 0.22	C : 0.06	c : 0.03	A : 0.03	U : 0.01	
G : 0.63	g : 0.25	A : 0.07	C : 0.03	
C : 0.66	c : 0.22	A : 0.06	U : 0.01	a : 0.01	u : 0.01	
G : 0.65	g : 0.22	C : 0.06	c : 0.04	A : 0.01	
G : 0.60	g : 0.22	A : 0.06	U : 0.04	c : 0.03	a : 0.01	C : 0.01	
G : 0.73	g : 0.26	
G : 0.65	g : 0.22	c : 0.04	U : 0.03	A : 0.03	C : 0.01	
C : 0.50	c : 0.25	G : 0.11	A : 0.07	U : 0.04	

#score	1186.9365079365073
#seq	63
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_UTR_m1_run2.nuc.txt

#NT
GGGAGAGAGGG	chr3:9475869-9476117(+)$1	248	37	48	19.8181
GGGGGCGGUGG	chr17:74732714-74732970(-)$1	256	58	69	19.8181
GGGGGAGGGAG	chr17:66031922-66032178(+)$1	256	105	116	22.0909
GGGGGAGGGGG	chr1:59247156-59247431(-)$1	275	26	37	26.1818
GGGGGGGAGGG	chr2:65496335-65496592(+)$1	257	108	119	20.7272
ggaggaggggg	chr3:100428670-100428988(+)$1	318	24	35	23.9090
GGCGGAGGCGG	chr7:5569356-5569623(-)$1	267	90	101	19.8181
gggggagggga	chr1:245026262-245026521(-)$1	259	158	169	22.0909
GGAGGAGAGGG	chr17:26940991-26941300(-)$1	309	228	239	21.6363
ggUGGAGGGGG	chr6:43738480-43738702(+)$1	222	85	96	23.4545

#otherMatches

#Struct PSSM
peeeeehhhhh	chr4:71847769-71848022(+)$1	253	110	121	23.4545
FFFFF{GGGGG	chr3:9475869-9476117(+)$1	248	37	48	19.8181
b"""bb[ffff	chr17:74732714-74732970(-)$1	256	58	69	19.8181
qqqffffff:D	chr17:66031922-66032178(+)$1	256	105	116	22.0909
fff####a[ee	chr1:59247156-59247431(-)$1	275	26	37	26.1818
eeeCCC{FFFF	chr2:65496335-65496592(+)$1	257	108	119	20.7272
CCMMMMCCC{B	chr3:100428670-100428988(+)$1	318	24	35	23.9090
DDDFFFFFF{H	chr7:5569356-5569623(-)$1	267	90	101	19.8181
b[bb!!bbooo	chr1:245026262-245026521(-)$1	259	158	169	22.0909
2dddd::eeee	chr17:26940991-26941300(-)$1	309	228	239	21.6363
DD}EEEEE}CC	chr6:43738480-43738702(+)$1	222	85	96	23.4545

#DB
.)))))(((((	chr4:71847769-71848022(+)$1	1	110	121	23.4545
(((((.(((((	chr3:9475869-9476117(+)$1	1	37	48	19.8181
(...((.((((	chr17:74732714-74732970(-)$1	1	58	69	19.8181
...)))))).)	chr17:66031922-66032178(+)$1	1	105	116	22.0909
(((....(.((	chr1:59247156-59247431(-)$1	1	26	37	26.1818
)))(((.((((	chr2:65496335-65496592(+)$1	1	108	119	20.7272
((....(((.(	chr3:100428670-100428988(+)$1	1	24	35	23.9090
(((((((((.(	chr7:5569356-5569623(-)$1	1	90	101	19.8181
(.((..((...	chr1:245026262-245026521(-)$1	1	158	169	22.0909
.))))..((((	chr17:26940991-26941300(-)$1	1	228	239	21.6363
)).))))).))	chr6:43738480-43738702(+)$1	1	85	96	23.4545

#PSSM
G : 0.72	g : 0.27	
G : 0.72	g : 0.27	
G : 0.54	a : 0.09	C : 0.09	g : 0.09	A : 0.09	U : 0.09	
G : 0.72	g : 0.18	A : 0.09	
G : 0.81	g : 0.18	
A : 0.54	C : 0.18	a : 0.18	G : 0.09	
G : 0.81	g : 0.18	
G : 0.54	A : 0.27	g : 0.18	
G : 0.63	g : 0.18	U : 0.09	C : 0.09	
G : 0.72	g : 0.18	A : 0.09	
G : 0.81	g : 0.09	a : 0.09	

#score	243.0
#seq	11
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_UTR_m3_run1.nuc.txt

#NT
UGGCUGGG	chr17:7082312-7082566(-)$1	254	87	95	14.8035
ggcccggg	chr19:15442543-15442792(-)$1	249	139	147	13.1071
GGGCUGGA	chr9:38620196-38620519(-)$1	323	44	52	14.7142
GGCCCGGG	chr2:28974736-28974994(+)$1	258	113	121	13.1071
GGGGUGGG	chr2:242707567-242707861(+)$1	294	101	109	15.1607
GGGCUGGG	chr2:97525493-97525817(-)$1	324	158	166	19.2678
CGGCUGGG	chr17:7477169-7477400(+)$1	231	85	93	14.8928
gcgcUGGG	chr14:32546303-32546550(+)$1	247	40	48	14.5357
GGUCUGGG	chr16:448084-448343(+)$1	259	17	25	15.6964
ggccgggg	chr6:170123960-170124248(-)$1	288	105	113	13.3750
AGGCUGGG	chr9:139937759-139938063(-)$1	304	205	213	14.8928
GGGCUUGG	chr2:62932897-62933152(+)$1	255	43	51	15.0714
GGGCUGGG	chr5:176980204-176980472(-)$1	268	48	56	19.2678
GGCCUGGG	chr16:30935307-30935576(+)$1	269	192	200	16.5000
GGGCGGGG	chr7:77166501-77166749(+)$1	248	67	75	16.1428
GGGCUGGG	chr12:57504849-57505154(-)$1	305	4	12	19.2678
gggcuggg	chr4:2935877-2936133(-)$1	256	78	86	19.2678
GGGCUGAG	chr17:45773171-45773414(+)$1	243	106	114	14.9821
GGGCUGGA	chr19:19120921-19121223(-)$1	302	288	296	14.7142
gggccggg	chr10:21823334-21823549(+)$1	215	136	144	15.8750
CGGCUGGG	chr17:7477029-7477290(+)$1	261	225	233	14.8928
GGGGUGGG	chr17:73233951-73234189(-)$1	238	169	177	15.1607
gggcgggg	chr3:128840308-128840628(-)$1	320	79	87	16.1428
GGGCUUGG	chr3:184102705-184102959(+)$1	254	219	227	15.0714
GGCCGGGG	chr10:103577725-103578033(-)$1	308	238	246	13.3750
GGGCUAGG	chr17:74380013-74380280(+)$1	267	190	198	14.8035
GGGCUGGC	chr12:125398892-125399136(-)$1	244	21	29	14.6250
AGGCUGGG	chr6:30545522-30545779(+)$1	257	103	111	14.8928
GGGCUGGG	chr3:184102284-184102582(+)$1	298	58	66	19.2678
GGGCCGGG	chr16:4664156-4664451(-)$1	295	65	73	15.8750
gggguggg	chr2:54197821-54198044(-)$1	223	65	73	15.1607
ggccuggg	chr11:3013196-3013461(-)$1	265	159	167	16.5000
GGGCUGAG	chr17:45773262-45773557(+)$1	295	15	23	14.9821
GGCCUGGG	chr17:79860510-79860762(-)$1	252	71	79	16.5000
gggcuggg	chr17:73997298-73997555(+)$1	257	95	103	19.2678
GGGCCGGG	chr19:10221639-10221943(+)$1	304	168	176	15.8750
GGGCUUGG	chr7:77166718-77166977(+)$1	259	20	28	15.0714
ggCCUGGG	chr15:64752854-64753156(+)$1	302	100	108	16.5000
GGGCUGUG	chr2:44065358-44065645(-)$1	287	118	126	15.0714
GGGCUGGG	chr9:35690590-35690872(-)$1	282	264	272	19.2678
GGCCGGGG	chrX:19002513-19002757(-)$1	244	118	126	13.3750
GGGCUGGG	chr4:763932-764221(-)$1	289	125	133	19.2678
GGGCUGGG	chr16:30959821-30960156(+)$1	335	96	104	19.2678
GGGCUUGG	chr7:77166654-77166918(+)$1	264	84	92	15.0714
GGGCUGCG	chr10:21785873-21786177(-)$1	304	53	61	14.8928
GGACUGGG	chr8:71314499-71314724(-)$1	225	109	117	15.6071
GGCCUGGG	chr9:116999160-116999413(+)$1	253	12	20	16.5000
GGGCUGUG	chr5:86563951-86564223(+)$1	272	143	151	15.0714
GGUCUGGG	chr16:447997-448255(+)$1	258	104	112	15.6964
GGGCGGGG	chr1:161087990-161088280(+)$1	290	110	118	16.1428
GGCCGGGG	chr14:23791035-23791282(+)$1	247	125	133	13.3750
GAGCUGGG	chr19:2270278-2270549(+)$1	271	237	245	14.5357
GGGGUGGG	chr7:1577298-1577593(+)$1	295	74	82	15.1607
GGGCGGGG	chr1:201123359-201123658(-)$1	299	42	50	16.1428
GGGCUGUG	chr19:6740919-6741154(+)$1	235	33	41	15.0714

#otherMatches

#Struct PSSM
eeeeffff	chr19:1104614-1104883(+)$1	269	81	89	15.1607
c]ccc]ee	chr17:7082312-7082566(-)$1	254	87	95	14.8035
dddd[ccc	chr19:15442543-15442792(-)$1	249	139	147	13.1071
!!bb####	chr9:38620196-38620519(-)$1	323	44	52	14.7142
CCCbbppp	chr2:28974736-28974994(+)$1	258	113	121	13.1071
cddddeee	chr2:242707567-242707861(+)$1	294	101	109	15.1607
[ddddooo	chr2:97525493-97525817(-)$1	324	158	166	19.2678
b[hhhhhh	chr17:7477169-7477400(+)$1	231	85	93	14.8928
[a[cccyy	chr14:32546303-32546550(+)$1	247	40	48	14.5357
ccc[dddd	chr16:448084-448343(+)$1	259	17	25	15.6964
b]bb333b	chr6:170123960-170124248(-)$1	288	105	113	13.3750
$$$fffff	chr9:139937759-139938063(-)$1	304	205	213	14.8928
==dddd[b	chr2:62932897-62933152(+)$1	255	43	51	15.0714
hhhh333g	chr5:176980204-176980472(-)$1	268	48	56	19.2678
::ddddhh	chr16:30935307-30935576(+)$1	269	192	200	16.5000
ggggggg+	chr7:77166501-77166749(+)$1	248	67	75	16.1428
GGG{FFFF	chr12:57504849-57505154(-)$1	305	4	12	19.2678
eeeee]bb	chr4:2935877-2936133(-)$1	256	78	86	19.2678
hhhhhh##	chr17:45773171-45773414(+)$1	243	106	114	14.9821
FFFFYYFF	chr19:19120921-19121223(-)$1	302	288	296	14.7142
ooooooee	chr10:21823334-21823549(+)$1	215	136	144	15.8750
b[hhhhhh	chr17:7477029-7477290(+)$1	261	225	233	14.8928
ffffccc[	chr17:73233951-73234189(-)$1	238	169	177	15.1607
22eeeeeJ	chr3:128840308-128840628(-)$1	320	79	87	16.1428
gggggmmm	chr3:184102705-184102959(+)$1	254	219	227	15.0714
eeee]eee	chr10:103577725-103578033(-)$1	308	238	246	13.3750
bbccc[cc	chr17:74380013-74380280(+)$1	267	190	198	14.8035
[ccc[eee	chr12:125398892-125399136(-)$1	244	21	29	14.6250
22eeeee6	chr6:30545522-30545779(+)$1	257	103	111	14.8928
2dddd:gg	chr3:184102284-184102582(+)$1	298	58	66	19.2678
KKDDDDDD	chr16:4664156-4664451(-)$1	295	65	73	15.8750
77a]ccc]	chr2:54197821-54198044(-)$1	223	65	73	15.1607
]eeeeeii	chr11:3013196-3013461(-)$1	265	159	167	16.5000
======##	chr17:45773262-45773557(+)$1	295	15	23	14.9821
]dddd]ee	chr17:79860510-79860762(-)$1	252	71	79	16.5000
mmccc22c	chr17:73997298-73997555(+)$1	257	95	103	19.2678
dddd!!gg	chr19:10221639-10221943(+)$1	304	168	176	15.8750
DDDEEEEE	chr7:77166718-77166977(+)$1	259	20	28	15.0714
ggggg333	chr15:64752854-64753156(+)$1	302	100	108	16.5000
gggggggd	chr2:44065358-44065645(-)$1	287	118	126	15.0714
GGGGGGG:	chr9:35690590-35690872(-)$1	282	264	272	19.2678
DDDD{GGG	chrX:19002513-19002757(-)$1	244	118	126	13.3750
B{DDDDEE	chr4:763932-764221(-)$1	289	125	133	19.2678
ee]ccc]e	chr16:30959821-30960156(+)$1	335	96	104	19.2678
DCCCEEEE	chr7:77166654-77166918(+)$1	264	84	92	15.0714
iiiiiii:	chr10:21785873-21786177(-)$1	304	53	61	14.8928
pppggggg	chr8:71314499-71314724(-)$1	225	109	117	15.6071
ii"""ddd	chr9:116999160-116999413(+)$1	253	12	20	16.5000
=[ffffff	chr5:86563951-86564223(+)$1	272	143	151	15.0714
======bb	chr16:447997-448255(+)$1	258	104	112	15.6964
===a[ddd	chr1:161087990-161088280(+)$1	290	110	118	16.1428
======""	chr14:23791035-23791282(+)$1	247	125	133	13.3750
!!a[a[ff	chr19:2270278-2270549(+)$1	271	237	245	14.5357
]iiiiiii	chr7:1577298-1577593(+)$1	295	74	82	15.1607
ff[a[bbn	chr1:201123359-201123658(-)$1	299	42	50	16.1428
eeeee!!f	chr19:6740919-6741154(+)$1	235	33	41	15.0714

#DB
))))))))	chr19:1104614-1104883(+)$1	1	81	89	15.1607
).))).))	chr17:7082312-7082566(-)$1	1	87	95	14.8035
((((.(((	chr19:15442543-15442792(-)$1	1	139	147	13.1071
..((....	chr9:38620196-38620519(-)$1	1	44	52	14.7142
(((((...	chr2:28974736-28974994(+)$1	1	113	121	13.1071
)))))(((	chr2:242707567-242707861(+)$1	1	101	109	15.1607
.((((...	chr2:97525493-97525817(-)$1	1	158	166	19.2678
(.((((((	chr17:7477169-7477400(+)$1	1	85	93	14.8928
.(.(((..	chr14:32546303-32546550(+)$1	1	40	48	14.5357
(((.((((	chr16:448084-448343(+)$1	1	17	25	15.6964
).))...)	chr6:170123960-170124248(-)$1	1	105	113	13.3750
...(((((	chr9:139937759-139938063(-)$1	1	205	213	14.8928
((((((.(	chr2:62932897-62933152(+)$1	1	43	51	15.0714
))))...)	chr5:176980204-176980472(-)$1	1	48	56	19.2678
..((((((	chr16:30935307-30935576(+)$1	1	192	200	16.5000
(((((((.	chr7:77166501-77166749(+)$1	1	67	75	16.1428
(((.((((	chr12:57504849-57505154(-)$1	1	4	12	19.2678
))))).))	chr4:2935877-2936133(-)$1	1	78	86	19.2678
((((((..	chr17:45773171-45773414(+)$1	1	106	114	14.9821
))))..))	chr19:19120921-19121223(-)$1	1	288	296	14.7142
......))	chr10:21823334-21823549(+)$1	1	136	144	15.8750
(.((((((	chr17:7477029-7477290(+)$1	1	225	233	14.8928
))))(((.	chr17:73233951-73234189(-)$1	1	169	177	15.1607
..))))))	chr3:128840308-128840628(-)$1	1	79	87	16.1428
(((((...	chr3:184102705-184102959(+)$1	1	219	227	15.0714
)))).)))	chr10:103577725-103578033(-)$1	1	238	246	13.3750
(((((.((	chr17:74380013-74380280(+)$1	1	190	198	14.8035
.(((.(((	chr12:125398892-125399136(-)$1	1	21	29	14.6250
..))))).	chr6:30545522-30545779(+)$1	1	103	111	14.8928
.)))).((	chr3:184102284-184102582(+)$1	1	58	66	19.2678
..((((((	chr16:4664156-4664451(-)$1	1	65	73	15.8750
..).))).	chr2:54197821-54198044(-)$1	1	65	73	15.1607
.)))))((	chr11:3013196-3013461(-)$1	1	159	167	16.5000
((((((..	chr17:45773262-45773557(+)$1	1	15	23	14.9821
.)))).))	chr17:79860510-79860762(-)$1	1	71	79	16.5000
..)))..)	chr17:73997298-73997555(+)$1	1	95	103	19.2678
((((..((	chr19:10221639-10221943(+)$1	1	168	176	15.8750
((((((((	chr7:77166718-77166977(+)$1	1	20	28	15.0714
)))))...	chr15:64752854-64753156(+)$1	1	100	108	16.5000
((((((((	chr2:44065358-44065645(-)$1	1	118	126	15.0714
))))))).	chr9:35690590-35690872(-)$1	1	264	272	19.2678
((((.(((	chrX:19002513-19002757(-)$1	1	118	126	13.3750
(.((((((	chr4:763932-764221(-)$1	1	125	133	19.2678
)).))).)	chr16:30959821-30960156(+)$1	1	96	104	19.2678
))))))))	chr7:77166654-77166918(+)$1	1	84	92	15.0714
))))))).	chr10:21785873-21786177(-)$1	1	53	61	14.8928
...)))))	chr8:71314499-71314724(-)$1	1	109	117	15.6071
((...(((	chr9:116999160-116999413(+)$1	1	12	20	16.5000
(.((((((	chr5:86563951-86564223(+)$1	1	143	151	15.0714
))))))((	chr16:447997-448255(+)$1	1	104	112	15.6964
((((.(((	chr1:161087990-161088280(+)$1	1	110	118	16.1428
((((((..	chr14:23791035-23791282(+)$1	1	125	133	13.3750
..(.(.((	chr19:2270278-2270549(+)$1	1	237	245	14.5357
.)))))))	chr7:1577298-1577593(+)$1	1	74	82	15.1607
((.(.((.	chr1:201123359-201123658(-)$1	1	42	50	16.1428
(((((..(	chr19:6740919-6741154(+)$1	1	33	41	15.0714

#PSSM
G : 0.73	g : 0.17	C : 0.03	A : 0.03	U : 0.01	
G : 0.80	g : 0.16	c : 0.01	A : 0.01	
G : 0.64	C : 0.14	g : 0.10	c : 0.05	U : 0.03	A : 0.01	
C : 0.76	c : 0.14	G : 0.07	g : 0.01	
U : 0.69	G : 0.10	u : 0.07	C : 0.05	c : 0.03	g : 0.03	
G : 0.76	g : 0.14	U : 0.07	A : 0.01	
G : 0.75	g : 0.14	U : 0.05	A : 0.03	C : 0.01	
G : 0.80	g : 0.14	A : 0.03	C : 0.01	

#score	883.2857142857144
#seq	56
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_transcript_m2_run1.nuc.txt

#NT
CCUGG	chr19:41115266-41115569(+)$1	303	147	152	15.0000
CCUGG	chr3:52521815-52522101(+)$1	286	269	274	15.0000
CCUGG	chr1:38287913-38288208(-)$1	295	259	264	15.0000
CCUGG	chr19:2341220-2341498(+)$1	278	58	63	15.0000
CCUGG	chr19:2111598-2111884(-)$1	286	22	27	15.0000
CCUGG	chr3:9870880-9871127(+)$1	247	38	43	15.0000
CCUGG	chr2:153520552-153520778(-)$1	226	123	128	15.0000
CCUGG	chr12:57081446-57081767(-)$1	321	48	53	15.0000
CCUGG	chr12:110765635-110765901(+)$1	266	45	50	15.0000
CCUGG	chr1:11865539-11865825(-)$1	286	113	118	15.0000
CCUGG	chr6:150023086-150023385(-)$1	299	18	23	15.0000
CCUGG	chr16:87865224-87865474(-)$1	250	21	26	15.0000
CCUGG	chr10:129924276-129924517(-)$1	241	174	179	15.0000
CCUGG	chr4:2306822-2307083(-)$1	261	252	257	15.0000
CCUGG	chr22:23524008-23524212(+)$1	204	67	72	15.0000
CCUGG	chr2:220046810-220047078(+)$1	268	54	59	15.0000
CCUGG	chr21:34923006-34923230(+)$1	224	103	108	15.0000
CCUGG	chr19:19616910-19617152(+)$1	242	6	11	15.0000
CCUGG	chr16:422140-422396(-)$1	256	19	24	15.0000
CCUGG	chr1:43308140-43308393(+)$1	253	57	62	15.0000
CCUGG	chr16:686085-686348(-)$1	263	120	125	15.0000
CCUGG	chrX:153716732-153716997(-)$1	265	18	23	15.0000
CCUGG	chr7:66104033-66104267(+)$1	234	16	21	15.0000
CCUGG	chrX:38664243-38664499(+)$1	256	81	86	15.0000
CCUGG	chr22:38687618-38687878(-)$1	260	228	233	15.0000
CCUGG	chr6:30558410-30558688(+)$1	278	31	36	15.0000
CCUGG	chr20:31436385-31436632(+)$1	247	152	157	15.0000
CCUGG	chr1:45228139-45228393(+)$1	254	38	43	15.0000
CCUGG	chr2:86850622-86850886(-)$1	264	60	65	15.0000
CCUGG	chr16:70285605-70285872(-)$1	267	72	77	15.0000
CCUGG	chr12:107486909-107487174(-)$1	265	68	73	15.0000
CCUGG	chr7:30174748-30174985(+)$1	237	173	178	15.0000
CCUGG	chr7:138793974-138794234(-)$1	260	75	80	15.0000
CCUGG	chr8:145741678-145741950(-)$1	272	9	14	15.0000
CCUGG	chr20:61834570-61834831(-)$1	261	10	15	15.0000
CCUGG	chr7:150066728-150067005(+)$1	277	114	119	15.0000
CCUGG	chr7:150093788-150094050(+)$1	262	107	112	15.0000
CCUGG	chr19:54377408-54377695(+)$1	287	46	51	15.0000
CCUGG	chr15:91303854-91304150(+)$1	296	141	146	15.0000
CCUGG	chr8:23291767-23292003(-)$1	236	32	37	15.0000
CCUGG	chr1:66041638-66041960(+)$1	322	79	84	15.0000
CCUGG	chr1:29474642-29474869(-)$1	227	111	116	15.0000
CCUGG	chr14:94526684-94526944(-)$1	260	120	125	15.0000
CCUGG	chr5:90666543-90666805(-)$1	262	106	111	15.0000
CCUGG	chrX:153667298-153667545(+)$1	247	96	101	15.0000
CCUGG	chr19:12903566-12903796(+)$1	230	155	160	15.0000
CCUGG	chr17:77082885-77083133(+)$1	248	24	29	15.0000
CCUGG	chr6:111196221-111196489(+)$1	268	229	234	15.0000
CCUGG	chr16:8942795-8943054(+)$1	259	196	201	15.0000
CCUGG	chr16:68119240-68119520(+)$1	280	145	150	15.0000
CCUGG	chr2:27604536-27604769(-)$1	233	45	50	15.0000
CCUGG	chr21:45739650-45739941(+)$1	291	166	171	15.0000
CCUGG	chr6:7229317-7229584(+)$1	267	74	79	15.0000
CCUGG	chr10:103901162-103901425(+)$1	263	229	234	15.0000
CCUGG	chr9:128003311-128003562(-)$1	251	38	43	15.0000
CCUGG	chr12:12870275-12870525(+)$1	250	238	243	15.0000
CCUGG	chr17:74035521-74035795(-)$1	274	244	249	15.0000

#otherMatches

#Struct PSSM
bgggg	chr7:99097447-99097708(-)$1	261	44	49	15.0000
b!!an	chr19:41115266-41115569(+)$1	303	147	152	15.0000
"cccn	chr3:52521815-52522101(+)$1	286	269	274	15.0000
CCCFF	chr1:38287913-38288208(-)$1	295	259	264	15.0000
qqqee	chr19:2341220-2341498(+)$1	278	58	63	15.0000
DDDcc	chr19:2111598-2111884(-)$1	286	22	27	15.0000
DDddd	chr3:9870880-9871127(+)$1	247	38	43	15.0000
:::bb	chr2:153520552-153520778(-)$1	226	123	128	15.0000
ccc]b	chr12:57081446-57081767(-)$1	321	48	53	15.0000
d22cc	chr12:110765635-110765901(+)$1	266	45	50	15.0000
ccccc	chr1:11865539-11865825(-)$1	286	113	118	15.0000
eelll	chr6:150023086-150023385(-)$1	299	18	23	15.0000
:eeee	chr16:87865224-87865474(-)$1	250	21	26	15.0000
fffff	chr10:129924276-129924517(-)$1	241	174	179	15.0000
FFFFD	chr4:2306822-2307083(-)$1	261	252	257	15.0000
ooocc	chr22:23524008-23524212(+)$1	204	67	72	15.0000
333dd	chr2:220046810-220047078(+)$1	268	54	59	15.0000
fffDD	chr21:34923006-34923230(+)$1	224	103	108	15.0000
lccc:	chr19:19616910-19617152(+)$1	242	6	11	15.0000
CIIII	chr16:422140-422396(-)$1	256	19	24	15.0000
bccc]	chr1:43308140-43308393(+)$1	253	57	62	15.0000
GGGGK	chr16:686085-686348(-)$1	263	120	125	15.0000
F:fff	chrX:153716732-153716997(-)$1	265	18	23	15.0000
b[ccc	chr7:66104033-66104267(+)$1	234	16	21	15.0000
]dddd	chrX:38664243-38664499(+)$1	256	81	86	15.0000
HHHHH	chr22:38687618-38687878(-)$1	260	228	233	15.0000
HHHHH	chr6:30558410-30558688(+)$1	278	31	36	15.0000
bccco	chr20:31436385-31436632(+)$1	247	152	157	15.0000
444ii	chr1:45228139-45228393(+)$1	254	38	43	15.0000
fffff	chr2:86850622-86850886(-)$1	264	60	65	15.0000
fffbb	chr16:70285605-70285872(-)$1	267	72	77	15.0000
DDD{C	chr12:107486909-107487174(-)$1	265	68	73	15.0000
cccnn	chr7:30174748-30174985(+)$1	237	173	178	15.0000
D::::	chr7:138793974-138794234(-)$1	260	75	80	15.0000
H:::d	chr8:145741678-145741950(-)$1	272	9	14	15.0000
KDDDD	chr20:61834570-61834831(-)$1	261	10	15	15.0000
ggggg	chr7:150066728-150067005(+)$1	277	114	119	15.0000
DDDDY	chr7:150093788-150094050(+)$1	262	107	112	15.0000
$$$ff	chr19:54377408-54377695(+)$1	287	46	51	15.0000
hhhhh	chr15:91303854-91304150(+)$1	296	141	146	15.0000
d::::	chr8:23291767-23292003(-)$1	236	32	37	15.0000
"""bb	chr1:66041638-66041960(+)$1	322	79	84	15.0000
$$$cc	chr1:29474642-29474869(-)$1	227	111	116	15.0000
CEEEE	chr14:94526684-94526944(-)$1	260	120	125	15.0000
::eee	chr5:90666543-90666805(-)$1	262	106	111	15.0000
gggqq	chrX:153667298-153667545(+)$1	247	96	101	15.0000
e::cc	chr19:12903566-12903796(+)$1	230	155	160	15.0000
e:::B	chr17:77082885-77083133(+)$1	248	24	29	15.0000
DDDDZ	chr6:111196221-111196489(+)$1	268	229	234	15.0000
hhhhh	chr16:8942795-8943054(+)$1	259	196	201	15.0000
FFFYY	chr16:68119240-68119520(+)$1	280	145	150	15.0000
DEEEE	chr2:27604536-27604769(-)$1	233	45	50	15.0000
EEEEE	chr21:45739650-45739941(+)$1	291	166	171	15.0000
cc[bb	chr6:7229317-7229584(+)$1	267	74	79	15.0000
]dddd	chr10:103901162-103901425(+)$1	263	229	234	15.0000
b22dd	chr9:128003311-128003562(-)$1	251	38	43	15.0000
FF}AC	chr12:12870275-12870525(+)$1	250	238	243	15.0000
EE}DD	chr17:74035521-74035795(-)$1	274	244	249	15.0000

#DB
)))))	chr7:99097447-99097708(-)$1	1	44	49	15.0000
(..(.	chr19:41115266-41115569(+)$1	1	147	152	15.0000
.(((.	chr3:52521815-52522101(+)$1	1	269	274	15.0000
)))))	chr1:38287913-38288208(-)$1	1	259	264	15.0000
...))	chr19:2341220-2341498(+)$1	1	58	63	15.0000
(((((	chr19:2111598-2111884(-)$1	1	22	27	15.0000
(((((	chr3:9870880-9871127(+)$1	1	38	43	15.0000
...((	chr2:153520552-153520778(-)$1	1	123	128	15.0000
))).)	chr12:57081446-57081767(-)$1	1	48	53	15.0000
)..))	chr12:110765635-110765901(+)$1	1	45	50	15.0000
))(((	chr1:11865539-11865825(-)$1	1	113	118	15.0000
((...	chr6:150023086-150023385(-)$1	1	18	23	15.0000
.((((	chr16:87865224-87865474(-)$1	1	21	26	15.0000
(((((	chr10:129924276-129924517(-)$1	1	174	179	15.0000
)))))	chr4:2306822-2307083(-)$1	1	252	257	15.0000
...))	chr22:23524008-23524212(+)$1	1	67	72	15.0000
...))	chr2:220046810-220047078(+)$1	1	54	59	15.0000
)))))	chr21:34923006-34923230(+)$1	1	103	108	15.0000
.))).	chr19:19616910-19617152(+)$1	1	6	11	15.0000
(((((	chr16:422140-422396(-)$1	1	19	24	15.0000
)))).	chr1:43308140-43308393(+)$1	1	57	62	15.0000
((((.	chr16:686085-686348(-)$1	1	120	125	15.0000
(.(((	chrX:153716732-153716997(-)$1	1	18	23	15.0000
(.(((	chr7:66104033-66104267(+)$1	1	16	21	15.0000
.))))	chrX:38664243-38664499(+)$1	1	81	86	15.0000
)))))	chr22:38687618-38687878(-)$1	1	228	233	15.0000
(((((	chr6:30558410-30558688(+)$1	1	31	36	15.0000
((((.	chr20:31436385-31436632(+)$1	1	152	157	15.0000
...))	chr1:45228139-45228393(+)$1	1	38	43	15.0000
)))))	chr2:86850622-86850886(-)$1	1	60	65	15.0000
)))((	chr16:70285605-70285872(-)$1	1	72	77	15.0000
(((.(	chr12:107486909-107487174(-)$1	1	68	73	15.0000
(((..	chr7:30174748-30174985(+)$1	1	173	178	15.0000
)....	chr7:138793974-138794234(-)$1	1	75	80	15.0000
(...(	chr8:145741678-145741950(-)$1	1	9	14	15.0000
.((((	chr20:61834570-61834831(-)$1	1	10	15	15.0000
(((((	chr7:150066728-150067005(+)$1	1	114	119	15.0000
)))).	chr7:150093788-150094050(+)$1	1	107	112	15.0000
...((	chr19:54377408-54377695(+)$1	1	46	51	15.0000
(((((	chr15:91303854-91304150(+)$1	1	141	146	15.0000
)....	chr8:23291767-23292003(-)$1	1	32	37	15.0000
...((	chr1:66041638-66041960(+)$1	1	79	84	15.0000
...((	chr1:29474642-29474869(-)$1	1	111	116	15.0000
)))))	chr14:94526684-94526944(-)$1	1	120	125	15.0000
..(((	chr5:90666543-90666805(-)$1	1	106	111	15.0000
(((..	chrX:153667298-153667545(+)$1	1	96	101	15.0000
)..((	chr19:12903566-12903796(+)$1	1	155	160	15.0000
)...(	chr17:77082885-77083133(+)$1	1	24	29	15.0000
)))).	chr6:111196221-111196489(+)$1	1	229	234	15.0000
)))))	chr16:8942795-8943054(+)$1	1	196	201	15.0000
)))..	chr16:68119240-68119520(+)$1	1	145	150	15.0000
(((((	chr2:27604536-27604769(-)$1	1	45	50	15.0000
)))))	chr21:45739650-45739941(+)$1	1	166	171	15.0000
((.((	chr6:7229317-7229584(+)$1	1	74	79	15.0000
.))))	chr10:103901162-103901425(+)$1	1	229	234	15.0000
)..))	chr9:128003311-128003562(-)$1	1	38	43	15.0000
)).))	chr12:12870275-12870525(+)$1	1	238	243	15.0000
)).))	chr17:74035521-74035795(-)$1	1	244	249	15.0000

#PSSM
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	

#score	870.0000000000001
#seq	58
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_CDS_m2_run2.nuc.txt

#NT
GGGAGGCUGAG	chr6:31508813-31509030(-)$1	217	43	54	17.6000
GGGCGCCAGGG	chr2:21266636-21266901(-)$1	265	152	163	17.2000
GGGACGCGGGG	chr3:133465151-133465428(+)$1	277	61	72	16.0000
GGGCCGGUGGG	chr16:1419954-1420253(-)$1	299	20	31	14.5999
ggccgcccggg	chr21:38119979-38120204(+)$1	225	98	109	13.5999
GGGCUGCAGGG	chr3:15900714-15900989(-)$1	275	115	126	17.4000
cggcggccggg	chr8:30669826-30670090(-)$1	264	107	118	17.9999
GUGUGGCCGGG	chr5:180670207-180670479(-)$1	272	73	84	14.7999
GGGCCGCUGGU	chr22:39714970-39715194(-)$1	224	33	44	14.8000
GGGAGGCUGAG	chr6:31508844-31509054(-)$1	210	67	78	17.6000
GGGCGCCAGGG	chr2:21266704-21267036(-)$1	332	287	298	17.2000
GGGCGGCGAAG	chr14:23770956-23771176(+)$1	220	62	73	15.0000
GGGGAGCUGGG	chr19:2270511-2270780(+)$1	269	1	12	15.3999
GCGCGGCCGGG	chr22:19929020-19929366(-)$1	346	180	191	17.9999
AGGCGGCUGCG	chr12:57039567-57039835(-)$1	268	41	52	15.3999
GGGAGGCUGAG	chr6:31508840-31509044(-)$1	204	57	68	17.6000
GGGUGGCUGGC	chr1:249151853-249152142(-)$1	289	36	47	14.8000
GGGAggcggcg	chr20:307085-307318(-)$1	233	95	106	16.4000
GGGCGGCCGGG	chr2:97482284-97482545(+)$1	261	148	159	22.0000
gggcggccggg	chr3:13461567-13461855(-)$1	288	86	97	22.0000
GGGCGGCGGGG	chr4:78740075-78740321(-)$1	246	42	53	21.4000
GCGCGGCUGUG	chr7:45144099-45144429(-)$1	330	102	113	15.2000
GGGCGGCGAAG	chr14:23770951-23771156(+)$1	205	67	78	15.0000
CGGCGGCCGCG	chr19:1104624-1104875(+)$1	251	172	183	15.3999

#otherMatches

#Struct PSSM
JJJJBBiiiii	chr19:2270346-2270589(+)$1	243	158	169	19.0000
d:::eeeee##	chr6:31508813-31509030(-)$1	217	43	54	17.6000
]hhhhhhhhaf	chr2:21266636-21266901(-)$1	265	152	163	17.2000
EEEEDDDD{BB	chr3:133465151-133465428(+)$1	277	61	72	16.0000
dddCCCCCCJJ	chr16:1419954-1420253(-)$1	299	20	31	14.5999
CCCHHHHHHHH	chr21:38119979-38120204(+)$1	225	98	109	13.5999
ma]dddd22bb	chr3:15900714-15900989(-)$1	275	115	126	17.4000
FFFFF{CCC{C	chr8:30669826-30670090(-)$1	264	107	118	17.9999
dddddbb:FFF	chr5:180670207-180670479(-)$1	272	73	84	14.7999
DDDD=======	chr22:39714970-39715194(-)$1	224	33	44	14.8000
bb]eeeee333	chr6:31508844-31509054(-)$1	210	67	78	17.6000
]hhhhhhhhaf	chr2:21266704-21267036(-)$1	332	287	298	17.2000
cc[ffffff[b	chr14:23770956-23771176(+)$1	220	62	73	15.0000
ggggggggggg	chr19:2270511-2270780(+)$1	269	1	12	15.3999
HH}A}EEEEEI	chr22:19929020-19929366(-)$1	346	180	191	17.9999
{BB{CCC{CCC	chr12:57039567-57039835(-)$1	268	41	52	15.3999
dd"""dddd""	chr6:31508840-31509044(-)$1	204	57	68	17.6000
ffffffmmmmf	chr1:249151853-249152142(-)$1	289	36	47	14.8000
eeeeee]bb]=	chr20:307085-307318(-)$1	233	95	106	16.4000
ooooooggggg	chr2:97482284-97482545(+)$1	261	148	159	22.0000
CCC{Adddd[b	chr3:13461567-13461855(-)$1	288	86	97	22.0000
iiiii[ddddn	chr4:78740075-78740321(-)$1	246	42	53	21.4000
bblllbb]a]e	chr7:45144099-45144429(-)$1	330	102	113	15.2000
cc[ffffff[b	chr14:23770951-23771156(+)$1	205	67	78	15.0000
dddllldddd2	chr19:1104624-1104875(+)$1	251	172	183	15.3999

#DB
))))))(((((	chr19:2270346-2270589(+)$1	1	158	169	19.0000
)...(((((..	chr6:31508813-31509030(-)$1	1	43	54	17.6000
.))))))))))	chr2:21266636-21266901(-)$1	1	152	163	17.2000
((((((((.((	chr3:133465151-133465428(+)$1	1	61	72	16.0000
)))((((((((	chr16:1419954-1420253(-)$1	1	20	31	14.5999
(((((((((((	chr21:38119979-38120204(+)$1	1	98	109	13.5999
.).))))..))	chr3:15900714-15900989(-)$1	1	115	126	17.4000
(((((.(((.(	chr8:30669826-30670090(-)$1	1	107	118	17.9999
))))))).(((	chr5:180670207-180670479(-)$1	1	73	84	14.7999
(((((((((((	chr22:39714970-39715194(-)$1	1	33	44	14.8000
)).)))))...	chr6:31508844-31509054(-)$1	1	67	78	17.6000
.))))))))))	chr2:21266704-21267036(-)$1	1	287	298	17.2000
((.((((((.(	chr14:23770956-23771176(+)$1	1	62	73	15.0000
(((((((((((	chr19:2270511-2270780(+)$1	1	1	12	15.3999
)).).))))))	chr22:19929020-19929366(-)$1	1	180	191	17.9999
.((.(((.(((	chr12:57039567-57039835(-)$1	1	41	52	15.3999
((...((((..	chr6:31508840-31509044(-)$1	1	57	68	17.6000
((((((....)	chr1:249151853-249152142(-)$1	1	36	47	14.8000
)))))).)).)	chr20:307085-307318(-)$1	1	95	106	16.4000
......)))))	chr2:97482284-97482545(+)$1	1	148	159	22.0000
(((.(((((.(	chr3:13461567-13461855(-)$1	1	86	97	22.0000
(((((.((((.	chr4:78740075-78740321(-)$1	1	42	53	21.4000
((...)).).)	chr7:45144099-45144429(-)$1	1	102	113	15.2000
((.((((((.(	chr14:23770951-23771156(+)$1	1	67	78	15.0000
(((...)))).	chr19:1104624-1104875(+)$1	1	172	183	15.3999

#PSSM
G : 0.80	g : 0.08	c : 0.04	A : 0.04	C : 0.04	
G : 0.76	g : 0.12	C : 0.08	U : 0.04	
G : 0.88	g : 0.08	c : 0.04	
C : 0.55	A : 0.20	c : 0.12	U : 0.08	G : 0.04	
G : 0.60	C : 0.16	g : 0.16	U : 0.04	A : 0.04	
G : 0.76	g : 0.12	C : 0.08	c : 0.04	
C : 0.80	c : 0.16	G : 0.04	
U : 0.36	C : 0.20	G : 0.16	A : 0.12	c : 0.12	g : 0.04	
G : 0.76	g : 0.16	A : 0.08	
G : 0.51	A : 0.20	g : 0.12	C : 0.08	c : 0.04	U : 0.04	
G : 0.76	g : 0.16	U : 0.04	C : 0.04	

#score	421.40000000000003
#seq	25
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_transcript_m1_run1.nuc.txt

#NT
ucu	chr13:46716358-46716649(-)$1	291	10	13	9.0000
UCU	chrX:119580063-119580377(-)$1	314	79	82	9.0000
UCU	chr14:102551662-102551868(-)$1	206	83	86	9.0000
UCU	chr2:10927315-10927564(-)$1	249	27	30	9.0000
UCU	chrX:119576353-119576592(-)$1	239	17	20	9.0000
UCU	chr22:36908404-36908636(-)$1	232	23	26	9.0000
UCU	chr5:179146638-179146874(+)$1	236	15	18	9.0000
UCU	chr12:8083101-8083321(-)$1	220	5	8	9.0000
UCU	chr1:116944075-116944354(+)$1	279	19	22	9.0000
UCU	chr11:6638122-6638369(-)$1	247	67	70	9.0000
UCU	chr12:50152065-50152295(+)$1	230	11	14	9.0000
UCU	chr3:41275214-41275457(+)$1	243	13	16	9.0000
UCU	chr6:53135340-53135595(-)$1	255	4	7	9.0000
UCU	chr4:141461221-141461565(+)$1	344	13	16	9.0000
UCU	chr6:108234492-108234733(-)$1	241	2	5	9.0000
UCU	chr1:201115848-201116077(-)$1	229	11	14	9.0000
UCU	chr11:129991424-129991690(+)$1	266	44	47	9.0000
UCU	chr2:10929817-10930036(-)$1	219	2	5	9.0000
UCU	chr10:73578701-73578960(-)$1	259	199	202	9.0000
UCU	chr17:57758555-57758780(+)$1	225	3	6	9.0000
UCU	chr1:207958862-207959099(+)$1	237	28	31	9.0000
UCU	chrX:65417584-65417824(+)$1	240	40	43	9.0000
UCU	chr11:14495958-14496213(-)$1	255	73	76	9.0000
UCU	chr20:43129622-43129883(-)$1	261	121	124	9.0000
UCU	chr19:48892747-48892983(-)$1	236	19	22	9.0000
UCU	chr6:159206240-159206493(-)$1	253	29	32	9.0000
ucu	chr4:862892-863193(-)$1	301	7	10	9.0000
UCU	chr11:62402356-62402567(-)$1	211	0	3	9.0000
UCU	chr17:61838554-61838811(-)$1	257	66	69	9.0000
UCU	chr1:54512880-54513139(-)$1	259	18	21	9.0000
UCU	chr8:98828271-98828508(+)$1	237	0	3	9.0000
UCU	chr3:133538303-133538571(+)$1	268	73	76	9.0000
UCU	chr2:128941152-128941417(+)$1	265	82	85	9.0000
UCU	chr15:34520601-34520891(+)$1	290	12	15	9.0000
UCU	chr12:21661303-21661576(+)$1	273	3	6	9.0000
UCU	chr3:156266592-156266846(-)$1	254	10	13	9.0000
UCU	chr6:33170591-33170827(+)$1	236	4	7	9.0000
UCU	chrX:153662657-153662892(+)$1	235	17	20	9.0000
ucu	chr19:49414321-49414589(+)$1	268	5	8	9.0000
ucu	chr10:102120390-102120625(+)$1	235	3	6	9.0000
UCU	chr11:88027130-88027452(-)$1	322	46	49	9.0000
UCU	chr12:8082974-8083192(-)$1	218	194	197	9.0000
UCU	chr11:43859764-43860037(+)$1	273	8	11	9.0000
UCU	chr5:151178672-151178888(+)$1	216	16	19	9.0000
UCU	chr17:28788897-28789182(+)$1	285	46	49	9.0000
UCU	chr20:35842163-35842364(+)$1	201	116	119	9.0000
UCU	chr7:128398852-128399145(+)$1	293	29	32	9.0000
UCU	chr19:48887388-48887608(-)$1	220	3	6	9.0000
UCU	chr17:79816956-79817224(-)$1	268	77	80	9.0000
UCU	chr2:113404866-113405118(+)$1	252	36	39	9.0000
UCU	chr12:8083760-8084038(-)$1	278	73	76	9.0000
UCU	chr1:100203541-100203771(-)$1	230	29	32	9.0000
UCU	chr11:62652598-62652855(+)$1	257	8	11	9.0000
UCU	chr3:127788276-127788546(+)$1	270	2	5	9.0000
UCU	chr10:106022636-106022853(+)$1	217	24	27	9.0000
UCU	chr19:13051138-13051351(+)$1	213	148	151	9.0000
UCU	chr12:110778450-110778730(+)$1	280	2	5	9.0000
UCU	chr13:46726866-46727123(-)$1	257	33	36	9.0000
UCU	chr20:30142522-30142733(+)$1	211	42	45	9.0000
UCU	chr20:4680370-4680737(+)$1	367	159	162	9.0000
UCU	chr4:108535267-108535545(-)$1	278	201	204	9.0000
UCU	chr11:64900292-64900579(-)$1	287	39	42	9.0000
UCU	chr12:8075437-8075676(-)$1	239	18	21	9.0000
UCU	chr20:3914659-3914943(-)$1	284	5	8	9.0000
UCU	chr19:11230968-11231294(+)$1	326	3	6	9.0000
UCU	chr6:7301575-7301841(-)$1	266	4	7	9.0000
UCU	chr11:315003-315233(+)$1	230	4	7	9.0000
UCU	chr19:14512127-14512399(+)$1	272	31	34	9.0000
UCU	chr8:15531160-15531434(+)$1	274	27	30	9.0000
UCU	chrX:119589281-119589522(-)$1	241	68	71	9.0000
UCU	chr19:13050164-13050390(+)$1	226	3	6	9.0000
UCU	chr11:6638830-6639090(-)$1	260	6	9	9.0000
UCU	chrX:47001991-47002244(-)$1	253	86	89	9.0000
UCU	chr21:15746090-15746343(-)$1	253	37	40	9.0000
ucu	chr22:19950121-19950370(+)$1	249	2	5	9.0000
UCU	chr11:71149947-71150208(-)$1	261	4	7	9.0000
UCU	chr17:42428319-42428604(+)$1	285	158	161	9.0000
UCU	chr3:133526499-133526768(+)$1	269	73	76	9.0000
UCU	chr12:65113764-65114055(-)$1	291	39	42	9.0000
UCU	chr9:90343400-90343757(+)$1	357	48	51	9.0000
UCU	chr6:33272152-33272443(-)$1	291	17	20	9.0000
UCU	chr10:126097011-126097218(-)$1	207	1	4	9.0000
UCU	chr8:124035852-124036055(-)$1	203	20	23	9.0000
UCU	chr15:64448823-64449042(-)$1	219	45	48	9.0000
UCU	chr3:195780255-195780485(-)$1	230	29	32	9.0000
UCU	chr6:7899732-7900005(-)$1	273	9	12	9.0000
UCU	chr3:41280535-41280797(+)$1	262	17	20	9.0000
UCU	chr15:44060586-44060824(+)$1	238	48	51	9.0000
UCU	chr10:74806600-74806826(-)$1	226	32	35	9.0000
UCU	chr5:179136947-179137166(+)$1	219	5	8	9.0000
UCU	chr7:100856313-100856584(-)$1	271	71	74	9.0000
UCU	chr1:22158052-22158319(-)$1	267	0	3	9.0000
UCU	chr1:17747109-17747315(-)$1	206	70	73	9.0000
UCU	chr7:107591575-107591860(-)$1	285	10	13	9.0000
UCU	chr1:113456658-113456887(-)$1	229	10	13	9.0000
UCU	chr17:76166989-76167236(+)$1	247	59	62	9.0000
UCU	chr7:148711896-148712109(-)$1	213	90	93	9.0000
UCU	chrX:77096651-77096917(-)$1	266	21	24	9.0000
UCU	chr22:38877211-38877475(+)$1	264	9	12	9.0000

#otherMatches

#Struct PSSM
}FF	chr19:13051151-13051360(+)$1	209	135	138	9.0000
:::	chr13:46716358-46716649(-)$1	291	10	13	9.0000
:::	chrX:119580063-119580377(-)$1	314	79	82	9.0000
h!!	chr14:102551662-102551868(-)$1	206	83	86	9.0000
eee	chr2:10927315-10927564(-)$1	249	27	30	9.0000
CCC	chrX:119576353-119576592(-)$1	239	17	20	9.0000
ccc	chr22:36908404-36908636(-)$1	232	23	26	9.0000
==[	chr5:179146638-179146874(+)$1	236	15	18	9.0000
::h	chr12:8083101-8083321(-)$1	220	5	8	9.0000
ddd	chr1:116944075-116944354(+)$1	279	19	22	9.0000
:::	chr11:6638122-6638369(-)$1	247	67	70	9.0000
OOO	chr12:50152065-50152295(+)$1	230	11	14	9.0000
{GG	chr3:41275214-41275457(+)$1	243	13	16	9.0000
:::	chr6:53135340-53135595(-)$1	255	4	7	9.0000
###	chr4:141461221-141461565(+)$1	344	13	16	9.0000
ccc	chr6:108234492-108234733(-)$1	241	2	5	9.0000
CLL	chr1:201115848-201116077(-)$1	229	11	14	9.0000
hhh	chr11:129991424-129991690(+)$1	266	44	47	9.0000
ggg	chr2:10929817-10930036(-)$1	219	2	5	9.0000
==[	chr10:73578701-73578960(-)$1	259	199	202	9.0000
CC:	chr17:57758555-57758780(+)$1	225	3	6	9.0000
ccc	chr1:207958862-207959099(+)$1	237	28	31	9.0000
fff	chrX:65417584-65417824(+)$1	240	40	43	9.0000
eee	chr11:14495958-14496213(-)$1	255	73	76	9.0000
]ee	chr20:43129622-43129883(-)$1	261	121	124	9.0000
DDB	chr19:48892747-48892983(-)$1	236	19	22	9.0000
CC{	chr6:159206240-159206493(-)$1	253	29	32	9.0000
f!!	chr4:862892-863193(-)$1	301	7	10	9.0000
:::	chr11:62402356-62402567(-)$1	211	0	3	9.0000
HHH	chr17:61838554-61838811(-)$1	257	66	69	9.0000
hhh	chr1:54512880-54513139(-)$1	259	18	21	9.0000
:dd	chr8:98828271-98828508(+)$1	237	0	3	9.0000
:::	chr3:133538303-133538571(+)$1	268	73	76	9.0000
GGG	chr2:128941152-128941417(+)$1	265	82	85	9.0000
nnd	chr15:34520601-34520891(+)$1	290	12	15	9.0000
:::	chr12:21661303-21661576(+)$1	273	3	6	9.0000
DD:	chr3:156266592-156266846(-)$1	254	10	13	9.0000
FF:	chr6:33170591-33170827(+)$1	236	4	7	9.0000
##b	chrX:153662657-153662892(+)$1	235	17	20	9.0000
:::	chr19:49414321-49414589(+)$1	268	5	8	9.0000
EEE	chr10:102120390-102120625(+)$1	235	3	6	9.0000
ccc	chr11:88027130-88027452(-)$1	322	46	49	9.0000
ddd	chr12:8082974-8083192(-)$1	218	194	197	9.0000
ggo	chr11:43859764-43860037(+)$1	273	8	11	9.0000
::e	chr5:151178672-151178888(+)$1	216	16	19	9.0000
ggg	chr17:28788897-28789182(+)$1	285	46	49	9.0000
pcc	chr20:35842163-35842364(+)$1	201	116	119	9.0000
fff	chr7:128398852-128399145(+)$1	293	29	32	9.0000
GGG	chr19:48887388-48887608(-)$1	220	3	6	9.0000
ddd	chr17:79816956-79817224(-)$1	268	77	80	9.0000
EE{	chr2:113404866-113405118(+)$1	252	36	39	9.0000
:::	chr12:8083760-8084038(-)$1	278	73	76	9.0000
ccg	chr1:100203541-100203771(-)$1	230	29	32	9.0000
HHH	chr11:62652598-62652855(+)$1	257	8	11	9.0000
Cgg	chr3:127788276-127788546(+)$1	270	2	5	9.0000
fff	chr10:106022636-106022853(+)$1	217	24	27	9.0000
}FF	chr19:13051138-13051351(+)$1	213	148	151	9.0000
ccc	chr12:110778450-110778730(+)$1	280	2	5	9.0000
FF:	chr13:46726866-46727123(-)$1	257	33	36	9.0000
ooo	chr20:30142522-30142733(+)$1	211	42	45	9.0000
cc[	chr20:4680370-4680737(+)$1	367	159	162	9.0000
D}J	chr4:108535267-108535545(-)$1	278	201	204	9.0000
DKK	chr11:64900292-64900579(-)$1	287	39	42	9.0000
d))	chr12:8075437-8075676(-)$1	239	18	21	9.0000
:::	chr20:3914659-3914943(-)$1	284	5	8	9.0000
hhh	chr19:11230968-11231294(+)$1	326	3	6	9.0000
EE:	chr6:7301575-7301841(-)$1	266	4	7	9.0000
FFF	chr11:315003-315233(+)$1	230	4	7	9.0000
eee	chr19:14512127-14512399(+)$1	272	31	34	9.0000
G::	chr8:15531160-15531434(+)$1	274	27	30	9.0000
+++	chrX:119589281-119589522(-)$1	241	68	71	9.0000
mmm	chr19:13050164-13050390(+)$1	226	3	6	9.0000
eee	chr11:6638830-6639090(-)$1	260	6	9	9.0000
cbb	chrX:47001991-47002244(-)$1	253	86	89	9.0000
EEE	chr21:15746090-15746343(-)$1	253	37	40	9.0000
:EE	chr22:19950121-19950370(+)$1	249	2	5	9.0000
JJJ	chr11:71149947-71150208(-)$1	261	4	7	9.0000
'''	chr17:42428319-42428604(+)$1	285	158	161	9.0000
:::	chr3:133526499-133526768(+)$1	269	73	76	9.0000
ddd	chr12:65113764-65114055(-)$1	291	39	42	9.0000
^^^	chr9:90343400-90343757(+)$1	357	48	51	9.0000
EEE	chr6:33272152-33272443(-)$1	291	17	20	9.0000
CCL	chr10:126097011-126097218(-)$1	207	1	4	9.0000
[a[	chr8:124035852-124036055(-)$1	203	20	23	9.0000
ggg	chr15:64448823-64449042(-)$1	219	45	48	9.0000
CCD	chr3:195780255-195780485(-)$1	230	29	32	9.0000
!!c	chr6:7899732-7900005(-)$1	273	9	12	9.0000
"""	chr3:41280535-41280797(+)$1	262	17	20	9.0000
rrr	chr15:44060586-44060824(+)$1	238	48	51	9.0000
::d	chr10:74806600-74806826(-)$1	226	32	35	9.0000
f++	chr5:179136947-179137166(+)$1	219	5	8	9.0000
F{C	chr7:100856313-100856584(-)$1	271	71	74	9.0000
:::	chr1:22158052-22158319(-)$1	267	0	3	9.0000
ppp	chr1:17747109-17747315(-)$1	206	70	73	9.0000
eee	chr7:107591575-107591860(-)$1	285	10	13	9.0000
ddd	chr1:113456658-113456887(-)$1	229	10	13	9.0000
bbn	chr17:76166989-76167236(+)$1	247	59	62	9.0000
III	chr7:148711896-148712109(-)$1	213	90	93	9.0000
ffc	chrX:77096651-77096917(-)$1	266	21	24	9.0000
EEE	chr22:38877211-38877475(+)$1	264	9	12	9.0000

#DB
.))	chr19:13051151-13051360(+)$1	1	135	138	9.0000
...	chr13:46716358-46716649(-)$1	1	10	13	9.0000
...	chrX:119580063-119580377(-)$1	1	79	82	9.0000
(..	chr14:102551662-102551868(-)$1	1	83	86	9.0000
(((	chr2:10927315-10927564(-)$1	1	27	30	9.0000
(((	chrX:119576353-119576592(-)$1	1	17	20	9.0000
(((	chr22:36908404-36908636(-)$1	1	23	26	9.0000
((.	chr5:179146638-179146874(+)$1	1	15	18	9.0000
..(	chr12:8083101-8083321(-)$1	1	5	8	9.0000
)))	chr1:116944075-116944354(+)$1	1	19	22	9.0000
...	chr11:6638122-6638369(-)$1	1	67	70	9.0000
...	chr12:50152065-50152295(+)$1	1	11	14	9.0000
.((	chr3:41275214-41275457(+)$1	1	13	16	9.0000
...	chr6:53135340-53135595(-)$1	1	4	7	9.0000
...	chr4:141461221-141461565(+)$1	1	13	16	9.0000
(((	chr6:108234492-108234733(-)$1	1	2	5	9.0000
(..	chr1:201115848-201116077(-)$1	1	11	14	9.0000
)))	chr11:129991424-129991690(+)$1	1	44	47	9.0000
(((	chr2:10929817-10930036(-)$1	1	2	5	9.0000
((.	chr10:73578701-73578960(-)$1	1	199	202	9.0000
((.	chr17:57758555-57758780(+)$1	1	3	6	9.0000
(((	chr1:207958862-207959099(+)$1	1	28	31	9.0000
(((	chrX:65417584-65417824(+)$1	1	40	43	9.0000
)))	chr11:14495958-14496213(-)$1	1	73	76	9.0000
.))	chr20:43129622-43129883(-)$1	1	121	124	9.0000
(((	chr19:48892747-48892983(-)$1	1	19	22	9.0000
((.	chr6:159206240-159206493(-)$1	1	29	32	9.0000
(..	chr4:862892-863193(-)$1	1	7	10	9.0000
...	chr11:62402356-62402567(-)$1	1	0	3	9.0000
(((	chr17:61838554-61838811(-)$1	1	66	69	9.0000
(((	chr1:54512880-54513139(-)$1	1	18	21	9.0000
.((	chr8:98828271-98828508(+)$1	1	0	3	9.0000
...	chr3:133538303-133538571(+)$1	1	73	76	9.0000
(((	chr2:128941152-128941417(+)$1	1	82	85	9.0000
..)	chr15:34520601-34520891(+)$1	1	12	15	9.0000
...	chr12:21661303-21661576(+)$1	1	3	6	9.0000
((.	chr3:156266592-156266846(-)$1	1	10	13	9.0000
((.	chr6:33170591-33170827(+)$1	1	4	7	9.0000
..(	chrX:153662657-153662892(+)$1	1	17	20	9.0000
...	chr19:49414321-49414589(+)$1	1	5	8	9.0000
(((	chr10:102120390-102120625(+)$1	1	3	6	9.0000
(((	chr11:88027130-88027452(-)$1	1	46	49	9.0000
)))	chr12:8082974-8083192(-)$1	1	194	197	9.0000
((.	chr11:43859764-43860037(+)$1	1	8	11	9.0000
..(	chr5:151178672-151178888(+)$1	1	16	19	9.0000
(((	chr17:28788897-28789182(+)$1	1	46	49	9.0000
.))	chr20:35842163-35842364(+)$1	1	116	119	9.0000
(((	chr7:128398852-128399145(+)$1	1	29	32	9.0000
(((	chr19:48887388-48887608(-)$1	1	3	6	9.0000
)))	chr17:79816956-79817224(-)$1	1	77	80	9.0000
((.	chr2:113404866-113405118(+)$1	1	36	39	9.0000
...	chr12:8083760-8084038(-)$1	1	73	76	9.0000
))(	chr1:100203541-100203771(-)$1	1	29	32	9.0000
(((	chr11:62652598-62652855(+)$1	1	8	11	9.0000
(((	chr3:127788276-127788546(+)$1	1	2	5	9.0000
(((	chr10:106022636-106022853(+)$1	1	24	27	9.0000
.))	chr19:13051138-13051351(+)$1	1	148	151	9.0000
(((	chr12:110778450-110778730(+)$1	1	2	5	9.0000
((.	chr13:46726866-46727123(-)$1	1	33	36	9.0000
...	chr20:30142522-30142733(+)$1	1	42	45	9.0000
((.	chr20:4680370-4680737(+)$1	1	159	162	9.0000
).)	chr4:108535267-108535545(-)$1	1	201	204	9.0000
(..	chr11:64900292-64900579(-)$1	1	39	42	9.0000
(..	chr12:8075437-8075676(-)$1	1	18	21	9.0000
...	chr20:3914659-3914943(-)$1	1	5	8	9.0000
(((	chr19:11230968-11231294(+)$1	1	3	6	9.0000
((.	chr6:7301575-7301841(-)$1	1	4	7	9.0000
(((	chr11:315003-315233(+)$1	1	4	7	9.0000
(((	chr19:14512127-14512399(+)$1	1	31	34	9.0000
(..	chr8:15531160-15531434(+)$1	1	27	30	9.0000
...	chrX:119589281-119589522(-)$1	1	68	71	9.0000
...	chr19:13050164-13050390(+)$1	1	3	6	9.0000
(((	chr11:6638830-6639090(-)$1	1	6	9	9.0000
)))	chrX:47001991-47002244(-)$1	1	86	89	9.0000
(((	chr21:15746090-15746343(-)$1	1	37	40	9.0000
.((	chr22:19950121-19950370(+)$1	1	2	5	9.0000
(((	chr11:71149947-71150208(-)$1	1	4	7	9.0000
...	chr17:42428319-42428604(+)$1	1	158	161	9.0000
...	chr3:133526499-133526768(+)$1	1	73	76	9.0000
)))	chr12:65113764-65114055(-)$1	1	39	42	9.0000
...	chr9:90343400-90343757(+)$1	1	48	51	9.0000
(((	chr6:33272152-33272443(-)$1	1	17	20	9.0000
((.	chr10:126097011-126097218(-)$1	1	1	4	9.0000
.(.	chr8:124035852-124036055(-)$1	1	20	23	9.0000
(((	chr15:64448823-64449042(-)$1	1	45	48	9.0000
(((	chr3:195780255-195780485(-)$1	1	29	32	9.0000
..(	chr6:7899732-7900005(-)$1	1	9	12	9.0000
...	chr3:41280535-41280797(+)$1	1	17	20	9.0000
...	chr15:44060586-44060824(+)$1	1	48	51	9.0000
..(	chr10:74806600-74806826(-)$1	1	32	35	9.0000
(..	chr5:179136947-179137166(+)$1	1	5	8	9.0000
(.(	chr7:100856313-100856584(-)$1	1	71	74	9.0000
...	chr1:22158052-22158319(-)$1	1	0	3	9.0000
...	chr1:17747109-17747315(-)$1	1	70	73	9.0000
(((	chr7:107591575-107591860(-)$1	1	10	13	9.0000
(((	chr1:113456658-113456887(-)$1	1	10	13	9.0000
((.	chr17:76166989-76167236(+)$1	1	59	62	9.0000
)))	chr7:148711896-148712109(-)$1	1	90	93	9.0000
(((	chrX:77096651-77096917(-)$1	1	21	24	9.0000
(((	chr22:38877211-38877475(+)$1	1	9	12	9.0000

#PSSM
U : 0.95	u : 0.05	
C : 0.95	c : 0.05	
U : 0.95	u : 0.05	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_CDS_m3_run2.nuc.txt

#NT
GCUGAGACCCUGAAGCCAAUGGGCAACGCCAAGCCUGCCGAGACCCUGAAGCCCAUGGGCAAUGCCAAGCCUGAUGAGAACCUGAAAUCCGCUAGCAAAGAAGAACUCAAGAAAGACGUUAAGAAUGAUGUGAACUGCAAGAGAGGCCAUGCAGGGACCACAGAUAAUGAAAAGAGAUCAGAGAGCCAGGGGACAGCCCCAGCCUUCAAGCAGAAGCUGCAAGAUGUUCAUGUGGCAGAGGGCAAGAAGCUGCUGCUCCAGUGCCAGGUGUCUUCUGACCCCCCAGC	chr3:123418933-123419254(-)$1	321	33	320	408.5000

#otherMatches

#Struct PSSM
::::::::::::::::::::bbmmmmbb::::::::::::::::::::::::::::::bbyyyyyyyyyyyyyyyybbGGGGGGG{CCCKKEEEEEKKCCCMMMMAKKDDDD:::::::::::::::::::bbbb&&&&&&&cccooooooccc7777777bb]bb:::::::cccqqqqqqqqccc::::::::cccrrrrrrrrrccc:ddddnnnnndddd::ddddqqqqqqqqdddd::ffffff"""ddddqqqqqqqqdddd4444ffffff:DDDDYYA	chr13:46549315-46549709(-)$1	394	48	335	408.5000
ff:EEEEEDDDDKKBBLLLCCCCCCKKBBKKCCCMMMMAKKA{DDDDLLLCCCHHHHHHHH:ccc!!ccc!!ccctttttttttttccc]ccc]ccc:::::BB{CCC:::::::ffffffmmmmffffff:::eeeee[aooooooa]eeeee:::::::::::::::::::CCC}BB:ccc[bb!!ddddmmmmdddd]bb]ccc::ddddllldddd::::HHHHHHHH}CCCYYDDDDAYYAYYCCCBBCCC}CCCYYBBDDDD}EEEEEcccooooooccc:	chr3:123418933-123419254(-)$1	321	33	320	408.5000

#DB
....................((....))..............................((................))(((((((.(((..(((((..(((....(..((((...................((((.......(((......))).......)).)).......(((........)))........(((.........))).((((.....))))..((((........))))..((((((...((((........))))....)))))).))))..)	chr13:46549315-46549709(-)$1	1	48	335	408.5000
)).(((((((((..((...((((((..((..(((....(..(.((((...(((((((((((.(((..(((..(((...........))).))).))).....((.(((.......((((((....))))))...(((((.(......).)))))...................))).)).(((.((..((((....)))).)).)))..((((...))))....)))))))).)))..)))))..)..)))))))).)))..)))))).)))))(((......))).	chr3:123418933-123419254(-)$1	1	33	320	408.5000

#PSSM
a : 0.50	G : 0.50	
a : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
c : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
a : 0.50	A : 0.50	
a : 0.50	G : 0.50	
a : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	A : 0.50	
a : 0.50	A : 0.50	
a : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	A : 0.50	
a : 0.50	A : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
a : 0.50	A : 0.50	
a : 0.50	A : 0.50	
a : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	A : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
a : 0.50	A : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
a : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	A : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	A : 0.50	
g : 0.50	A : 0.50	
a : 0.50	U : 0.50	
a : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
a : 0.50	A : 0.50	
a : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
a : 0.50	A : 0.50	
g : 0.50	A : 0.50	
a : 0.50	G : 0.50	
a : 0.50	A : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	A : 0.50	
c : 0.50	C : 0.50	
g : 0.50	U : 0.50	
a : 0.50	C : 0.50	
g : 0.50	A : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
a : 0.50	A : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
a : 0.50	G : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	C : 0.50	

#score	817.0
#seq	2
#width	287
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_UTR_m3_run1.nuc.txt

#NT
CAGG	chr19:48956442-48956747(+)$1	305	39	43	12.0000
CAGG	chr1:29652107-29652359(+)$1	252	0	4	12.0000
CAGG	chr5:149676101-149676361(-)$1	260	58	62	12.0000
CAGG	chr16:1988521-1988810(-)$1	289	118	122	12.0000
CAGG	chr17:46138270-46138605(+)$1	335	134	138	12.0000
CAGG	chr1:16722184-16722509(+)$1	325	133	137	12.0000
CAGG	chr7:44423442-44423752(-)$1	310	209	213	12.0000
CAGG	chr12:46752331-46752608(-)$1	277	138	142	12.0000
CAGG	chr14:99980740-99981041(-)$1	301	48	52	12.0000
CAGG	chr8:22108250-22108491(+)$1	241	123	127	12.0000
CAGG	chr11:63971785-63972070(+)$1	285	155	159	12.0000
CAGG	chr2:120195298-120195547(+)$1	249	44	48	12.0000
CAGG	chr9:4664032-4664351(+)$1	319	178	182	12.0000
cagg	chr1:24933953-24934208(+)$1	255	123	127	12.0000
CAGG	chr19:306107-306418(-)$1	311	37	41	12.0000
cagg	chr12:51324336-51324549(+)$1	213	72	76	12.0000
CAGG	chr20:61445106-61445406(+)$1	300	67	71	12.0000
CAGG	chr1:59247394-59247659(-)$1	265	122	126	12.0000
CAGG	chr20:55983582-55983905(+)$1	323	152	156	12.0000
CAGG	chr9:135933552-135933841(+)$1	289	105	109	12.0000
CAGG	chr16:66756806-66757113(-)$1	307	149	153	12.0000
CAGG	chr8:145162276-145162542(+)$1	266	8	12	12.0000
CAGG	chr16:31142949-31143227(-)$1	278	2	6	12.0000
CAGG	chr1:1469593-1469914(+)$1	321	25	29	12.0000
CAGG	chr22:36678010-36678297(-)$1	287	126	130	12.0000
CAGG	chr4:2930223-2930512(+)$1	289	269	273	12.0000
CAGG	chr12:123212170-123212446(-)$1	276	14	18	12.0000
CAGG	chr6:34558134-34558393(-)$1	259	13	17	12.0000
CAGG	chr3:129033696-129033946(-)$1	250	172	176	12.0000
CAGG	chr17:80197095-80197404(+)$1	309	12	16	12.0000
CAGG	chr4:1809636-1809872(+)$1	236	61	65	12.0000
cagg	chr2:128950336-128950608(+)$1	272	137	141	12.0000
CAGG	chr17:1657960-1658202(+)$1	242	46	50	12.0000
CAGG	chr19:10396702-10397036(+)$1	334	24	28	12.0000
CAGG	chr17:46137819-46138082(+)$1	263	220	224	12.0000
CAGG	chr9:132898426-132898671(+)$1	245	67	71	12.0000
CAGG	chr1:11901647-11901911(+)$1	264	72	76	12.0000
CAGG	chr16:87364281-87364615(-)$1	334	60	64	12.0000
CAGG	chr1:171560906-171561240(+)$1	334	47	51	12.0000
cagg	chr17:39958730-39959002(-)$1	272	49	53	12.0000
CAGG	chr19:11033434-11033740(-)$1	306	72	76	12.0000
CAGG	chr19:2101680-2102008(-)$1	328	146	150	12.0000
CAGG	chr19:55741642-55741870(-)$1	228	37	41	12.0000
CAGG	chr19:2101520-2101747(-)$1	227	87	91	12.0000
CAGG	chr12:45824912-45825175(+)$1	263	41	45	12.0000
CAGG	chr12:118583180-118583433(+)$1	253	1	5	12.0000
CAGG	chrX:149936344-149936664(-)$1	320	146	150	12.0000
cagg	chr1:154438947-154439206(+)$1	259	110	114	12.0000
CAGG	chr16:1988421-1988697(-)$1	276	5	9	12.0000
CAGG	chr19:16757731-16758044(-)$1	313	4	8	12.0000
CAGG	chr2:27323007-27323293(+)$1	286	141	145	12.0000
CAGG	chr1:10479809-10480133(+)$1	324	34	38	12.0000
CAGG	chr11:67165652-67165963(-)$1	311	45	49	12.0000
CAGG	chr7:2420128-2420421(+)$1	293	189	193	12.0000
CAGG	chr19:19221929-19222304(+)$1	375	123	127	12.0000
CAGG	chr9:129266225-129266488(+)$1	263	23	27	12.0000
CAGG	chr2:8870084-8870446(-)$1	362	70	74	12.0000
CAGG	chr17:7077071-7077344(-)$1	273	189	193	12.0000
CAGG	chr3:53851627-53851872(-)$1	245	44	48	12.0000
CAGG	chr17:38078073-38078279(-)$1	206	12	16	12.0000
CAGG	chr7:2701824-2702087(+)$1	263	105	109	12.0000
CAGG	chr1:9325620-9325893(+)$1	273	35	39	12.0000
CAGG	chr12:113596464-113596747(-)$1	283	6	10	12.0000
CAGG	chr17:42270605-42270886(-)$1	281	33	37	12.0000
CAGG	chr4:39289254-39289516(-)$1	262	14	18	12.0000
CAGG	chr1:155106404-155106675(+)$1	271	171	175	12.0000
CAGG	chr19:541576-541870(+)$1	294	199	203	12.0000
CAGG	chr10:82032941-82033251(-)$1	310	68	72	12.0000
CAGG	chr2:47129388-47129647(-)$1	259	104	108	12.0000
CAGG	chr11:129728685-129728928(+)$1	243	21	25	12.0000
CAGG	chr7:5645941-5646235(+)$1	294	14	18	12.0000
CAGG	chr2:20401277-20401514(-)$1	237	17	21	12.0000
CAGG	chr20:48569881-48570166(+)$1	285	206	210	12.0000
CAGG	chr19:48886115-48886323(-)$1	208	98	102	12.0000
CAGG	chr16:57462496-57462777(-)$1	281	11	15	12.0000
cagg	chr1:28823811-28824102(+)$1	291	42	46	12.0000
CAGG	chr11:868920-869219(-)$1	299	3	7	12.0000
CAGG	chr9:130670234-130670534(-)$1	300	32	36	12.0000
CAGG	chr1:11104856-11105132(-)$1	276	163	167	12.0000
CAGG	chr12:121135541-121135831(+)$1	290	150	154	12.0000
CAGG	chr5:176084992-176085331(+)$1	339	41	45	12.0000
CAGG	chr17:40126521-40126839(+)$1	318	87	91	12.0000
CAGG	chr1:161199400-161199692(+)$1	292	144	148	12.0000
CAGG	chr15:74005792-74006075(+)$1	283	25	29	12.0000
CAGG	chr17:57475019-57475353(+)$1	334	109	113	12.0000
cagg	chr22:36622793-36623130(-)$1	337	26	30	12.0000
CAGG	chr7:99054265-99054525(+)$1	260	135	139	12.0000
CAGG	chr1:235273560-235273848(-)$1	288	38	42	12.0000

#otherMatches

#Struct PSSM
ffff	chr3:195777861-195778103(-)$1	242	51	55	12.0000
DDDD	chr19:48956442-48956747(+)$1	305	39	43	12.0000
::::	chr1:29652107-29652359(+)$1	252	0	4	12.0000
E::B	chr5:149676101-149676361(-)$1	260	58	62	12.0000
DDDD	chr16:1988521-1988810(-)$1	289	118	122	12.0000
e:==	chr17:46138270-46138605(+)$1	335	134	138	12.0000
eeed	chr1:16722184-16722509(+)$1	325	133	137	12.0000
eeee	chr7:44423442-44423752(-)$1	310	209	213	12.0000
eeee	chr12:46752331-46752608(-)$1	277	138	142	12.0000
GGGG	chr14:99980740-99981041(-)$1	301	48	52	12.0000
eeee	chr8:22108250-22108491(+)$1	241	123	127	12.0000
cccp	chr11:63971785-63972070(+)$1	285	155	159	12.0000
eeee	chr2:120195298-120195547(+)$1	249	44	48	12.0000
eeec	chr9:4664032-4664351(+)$1	319	178	182	12.0000
2hhh	chr1:24933953-24934208(+)$1	255	123	127	12.0000
BEEE	chr19:306107-306418(-)$1	311	37	41	12.0000
}GGG	chr12:51324336-51324549(+)$1	213	72	76	12.0000
dddd	chr20:61445106-61445406(+)$1	300	67	71	12.0000
cfff	chr1:59247394-59247659(-)$1	265	122	126	12.0000
22cc	chr20:55983582-55983905(+)$1	323	152	156	12.0000
JJJJ	chr9:135933552-135933841(+)$1	289	105	109	12.0000
eeeo	chr16:66756806-66757113(-)$1	307	149	153	12.0000
eeee	chr8:145162276-145162542(+)$1	266	8	12	12.0000
DDDL	chr16:31142949-31143227(-)$1	278	2	6	12.0000
mmee	chr1:1469593-1469914(+)$1	321	25	29	12.0000
dddd	chr22:36678010-36678297(-)$1	287	126	130	12.0000
ffff	chr4:2930223-2930512(+)$1	289	269	273	12.0000
FFFF	chr12:123212170-123212446(-)$1	276	14	18	12.0000
E{BB	chr6:34558134-34558393(-)$1	259	13	17	12.0000
2fff	chr3:129033696-129033946(-)$1	250	172	176	12.0000
EEgg	chr17:80197095-80197404(+)$1	309	12	16	12.0000
dddd	chr4:1809636-1809872(+)$1	236	61	65	12.0000
2ddd	chr2:128950336-128950608(+)$1	272	137	141	12.0000
eeee	chr17:1657960-1658202(+)$1	242	46	50	12.0000
d]ff	chr19:10396702-10397036(+)$1	334	24	28	12.0000
CCC}	chr17:46137819-46138082(+)$1	263	220	224	12.0000
::::	chr9:132898426-132898671(+)$1	245	67	71	12.0000
eeee	chr1:11901647-11901911(+)$1	264	72	76	12.0000
qqqq	chr16:87364281-87364615(-)$1	334	60	64	12.0000
d!!e	chr1:171560906-171561240(+)$1	334	47	51	12.0000
Jeee	chr17:39958730-39959002(-)$1	272	49	53	12.0000
ffff	chr19:11033434-11033740(-)$1	306	72	76	12.0000
====	chr19:2101680-2102008(-)$1	328	146	150	12.0000
gggb	chr19:55741642-55741870(-)$1	228	37	41	12.0000
b!!b	chr19:2101520-2101747(-)$1	227	87	91	12.0000
qqqq	chr12:45824912-45825175(+)$1	263	41	45	12.0000
ddd[	chr12:118583180-118583433(+)$1	253	1	5	12.0000
DDDD	chrX:149936344-149936664(-)$1	320	146	150	12.0000
HHHH	chr1:154438947-154439206(+)$1	259	110	114	12.0000
:::D	chr16:1988421-1988697(-)$1	276	5	9	12.0000
dd[b	chr19:16757731-16758044(-)$1	313	4	8	12.0000
ffff	chr2:27323007-27323293(+)$1	286	141	145	12.0000
eeee	chr1:10479809-10480133(+)$1	324	34	38	12.0000
:ddd	chr11:67165652-67165963(-)$1	311	45	49	12.0000
gggg	chr7:2420128-2420421(+)$1	293	189	193	12.0000
"eee	chr19:19221929-19222304(+)$1	375	123	127	12.0000
DDD{	chr9:129266225-129266488(+)$1	263	23	27	12.0000
eee"	chr2:8870084-8870446(-)$1	362	70	74	12.0000
dddl	chr17:7077071-7077344(-)$1	273	189	193	12.0000
HHHH	chr3:53851627-53851872(-)$1	245	44	48	12.0000
DDGG	chr17:38078073-38078279(-)$1	206	12	16	12.0000
'ccc	chr7:2701824-2702087(+)$1	263	105	109	12.0000
OOBB	chr1:9325620-9325893(+)$1	273	35	39	12.0000
A:ii	chr12:113596464-113596747(-)$1	283	6	10	12.0000
dddd	chr17:42270605-42270886(-)$1	281	33	37	12.0000
JJJJ	chr4:39289254-39289516(-)$1	262	14	18	12.0000
dddd	chr1:155106404-155106675(+)$1	271	171	175	12.0000
EYYF	chr19:541576-541870(+)$1	294	199	203	12.0000
C{BB	chr10:82032941-82033251(-)$1	310	68	72	12.0000
:ccc	chr2:47129388-47129647(-)$1	259	104	108	12.0000
gggg	chr11:129728685-129728928(+)$1	243	21	25	12.0000
:ggg	chr7:5645941-5646235(+)$1	294	14	18	12.0000
hhhh	chr2:20401277-20401514(-)$1	237	17	21	12.0000
::cc	chr20:48569881-48570166(+)$1	285	206	210	12.0000
[ddd	chr19:48886115-48886323(-)$1	208	98	102	12.0000
mmmb	chr16:57462496-57462777(-)$1	281	11	15	12.0000
gggg	chr1:28823811-28824102(+)$1	291	42	46	12.0000
::::	chr11:868920-869219(-)$1	299	3	7	12.0000
:::c	chr9:130670234-130670534(-)$1	300	32	36	12.0000
gggg	chr1:11104856-11105132(-)$1	276	163	167	12.0000
oooc	chr12:121135541-121135831(+)$1	290	150	154	12.0000
eeec	chr5:176084992-176085331(+)$1	339	41	45	12.0000
::ff	chr17:40126521-40126839(+)$1	318	87	91	12.0000
JJJJ	chr1:161199400-161199692(+)$1	292	144	148	12.0000
ffff	chr15:74005792-74006075(+)$1	283	25	29	12.0000
KKFF	chr17:57475019-57475353(+)$1	334	109	113	12.0000
hhhh	chr22:36622793-36623130(-)$1	337	26	30	12.0000
nncc	chr7:99054265-99054525(+)$1	260	135	139	12.0000
====	chr1:235273560-235273848(-)$1	288	38	42	12.0000

#DB
))))	chr3:195777861-195778103(-)$1	1	51	55	12.0000
((((	chr19:48956442-48956747(+)$1	1	39	43	12.0000
....	chr1:29652107-29652359(+)$1	1	0	4	12.0000
(..(	chr5:149676101-149676361(-)$1	1	58	62	12.0000
))))	chr16:1988521-1988810(-)$1	1	118	122	12.0000
).((	chr17:46138270-46138605(+)$1	1	134	138	12.0000
)))(	chr1:16722184-16722509(+)$1	1	133	137	12.0000
((((	chr7:44423442-44423752(-)$1	1	209	213	12.0000
((((	chr12:46752331-46752608(-)$1	1	138	142	12.0000
((((	chr14:99980740-99981041(-)$1	1	48	52	12.0000
))))	chr8:22108250-22108491(+)$1	1	123	127	12.0000
(((.	chr11:63971785-63972070(+)$1	1	155	159	12.0000
))))	chr2:120195298-120195547(+)$1	1	44	48	12.0000
))))	chr9:4664032-4664351(+)$1	1	178	182	12.0000
.)))	chr1:24933953-24934208(+)$1	1	123	127	12.0000
((((	chr19:306107-306418(-)$1	1	37	41	12.0000
.)))	chr12:51324336-51324549(+)$1	1	72	76	12.0000
((((	chr20:61445106-61445406(+)$1	1	67	71	12.0000
))))	chr1:59247394-59247659(-)$1	1	122	126	12.0000
..))	chr20:55983582-55983905(+)$1	1	152	156	12.0000
))))	chr9:135933552-135933841(+)$1	1	105	109	12.0000
(((.	chr16:66756806-66757113(-)$1	1	149	153	12.0000
((((	chr8:145162276-145162542(+)$1	1	8	12	12.0000
(((.	chr16:31142949-31143227(-)$1	1	2	6	12.0000
..))	chr1:1469593-1469914(+)$1	1	25	29	12.0000
)))(	chr22:36678010-36678297(-)$1	1	126	130	12.0000
))))	chr4:2930223-2930512(+)$1	1	269	273	12.0000
((((	chr12:123212170-123212446(-)$1	1	14	18	12.0000
(.((	chr6:34558134-34558393(-)$1	1	13	17	12.0000
.)))	chr3:129033696-129033946(-)$1	1	172	176	12.0000
((((	chr17:80197095-80197404(+)$1	1	12	16	12.0000
))))	chr4:1809636-1809872(+)$1	1	61	65	12.0000
.)))	chr2:128950336-128950608(+)$1	1	137	141	12.0000
((((	chr17:1657960-1658202(+)$1	1	46	50	12.0000
).))	chr19:10396702-10397036(+)$1	1	24	28	12.0000
))).	chr17:46137819-46138082(+)$1	1	220	224	12.0000
....	chr9:132898426-132898671(+)$1	1	67	71	12.0000
))))	chr1:11901647-11901911(+)$1	1	72	76	12.0000
....	chr16:87364281-87364615(-)$1	1	60	64	12.0000
(..(	chr1:171560906-171561240(+)$1	1	47	51	12.0000
((((	chr17:39958730-39959002(-)$1	1	49	53	12.0000
((((	chr19:11033434-11033740(-)$1	1	72	76	12.0000
))))	chr19:2101680-2102008(-)$1	1	146	150	12.0000
((((	chr19:55741642-55741870(-)$1	1	37	41	12.0000
(..(	chr19:2101520-2101747(-)$1	1	87	91	12.0000
....	chr12:45824912-45825175(+)$1	1	41	45	12.0000
(((.	chr12:118583180-118583433(+)$1	1	1	5	12.0000
((((	chrX:149936344-149936664(-)$1	1	146	150	12.0000
((((	chr1:154438947-154439206(+)$1	1	110	114	12.0000
...(	chr16:1988421-1988697(-)$1	1	5	9	12.0000
((.(	chr19:16757731-16758044(-)$1	1	4	8	12.0000
((((	chr2:27323007-27323293(+)$1	1	141	145	12.0000
((((	chr1:10479809-10480133(+)$1	1	34	38	12.0000
.(((	chr11:67165652-67165963(-)$1	1	45	49	12.0000
))))	chr7:2420128-2420421(+)$1	1	189	193	12.0000
.(((	chr19:19221929-19222304(+)$1	1	123	127	12.0000
(((.	chr9:129266225-129266488(+)$1	1	23	27	12.0000
(((.	chr2:8870084-8870446(-)$1	1	70	74	12.0000
(((.	chr17:7077071-7077344(-)$1	1	189	193	12.0000
((((	chr3:53851627-53851872(-)$1	1	44	48	12.0000
((((	chr17:38078073-38078279(-)$1	1	12	16	12.0000
.(((	chr7:2701824-2702087(+)$1	1	105	109	12.0000
..((	chr1:9325620-9325893(+)$1	1	35	39	12.0000
(.((	chr12:113596464-113596747(-)$1	1	6	10	12.0000
))))	chr17:42270605-42270886(-)$1	1	33	37	12.0000
((((	chr4:39289254-39289516(-)$1	1	14	18	12.0000
))))	chr1:155106404-155106675(+)$1	1	171	175	12.0000
)..)	chr19:541576-541870(+)$1	1	199	203	12.0000
(.((	chr10:82032941-82033251(-)$1	1	68	72	12.0000
.(((	chr2:47129388-47129647(-)$1	1	104	108	12.0000
((((	chr11:129728685-129728928(+)$1	1	21	25	12.0000
.(((	chr7:5645941-5646235(+)$1	1	14	18	12.0000
((((	chr2:20401277-20401514(-)$1	1	17	21	12.0000
..((	chr20:48569881-48570166(+)$1	1	206	210	12.0000
.(((	chr19:48886115-48886323(-)$1	1	98	102	12.0000
...)	chr16:57462496-57462777(-)$1	1	11	15	12.0000
((((	chr1:28823811-28824102(+)$1	1	42	46	12.0000
....	chr11:868920-869219(-)$1	1	3	7	12.0000
...(	chr9:130670234-130670534(-)$1	1	32	36	12.0000
))))	chr1:11104856-11105132(-)$1	1	163	167	12.0000
...)	chr12:121135541-121135831(+)$1	1	150	154	12.0000
))))	chr5:176084992-176085331(+)$1	1	41	45	12.0000
..((	chr17:40126521-40126839(+)$1	1	87	91	12.0000
((((	chr1:161199400-161199692(+)$1	1	144	148	12.0000
((((	chr15:74005792-74006075(+)$1	1	25	29	12.0000
..((	chr17:57475019-57475353(+)$1	1	109	113	12.0000
((((	chr22:36622793-36623130(-)$1	1	26	30	12.0000
..))	chr7:99054265-99054525(+)$1	1	135	139	12.0000
))))	chr1:235273560-235273848(-)$1	1	38	42	12.0000

#PSSM
C : 0.92	c : 0.07	
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	

#score	1068.0000000000007
#seq	89
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_UTR_m1_run2.nuc.txt

#NT
AGAUGG	chr19:39329395-39329641(-)$1	246	26	32	10.0149
GGCUGG	chr2:32264336-32264666(-)$1	330	29	35	10.7611
AGCUGC	chr2:175978585-175978866(-)$1	281	132	138	9.7164
GGCUGG	chr7:100160163-100160410(+)$1	247	127	133	10.7611
AGCUGC	chr1:5927700-5927906(-)$1	206	5	11	9.7164
ACCUGG	chr12:58220643-58220913(-)$1	270	16	22	9.5671
AGCUGG	chr12:6675533-6675786(-)$1	253	107	113	13.7462
CGCUGG	chr17:4192382-4192640(-)$1	258	17	23	10.0149
AGCUUG	chr6:25691195-25691476(+)$1	281	146	152	9.0447
AUCUGG	chr7:6523443-6523729(-)$1	286	107	113	9.5671
AGCUGG	chr11:67810832-67811106(+)$1	274	100	106	13.7462
ggcugg	chr5:122848132-122848408(+)$1	276	220	226	10.7611
AGAUGG	chr12:54680393-54680623(+)$1	230	2	8	10.0149
AGCGGG	chr3:184081048-184081355(+)$1	307	45	51	9.7910
AGCCGG	chr5:133984753-133985007(+)$1	254	20	26	9.7910
AGGUGG	chr3:122811177-122811420(+)$1	243	24	30	9.8656
AGCCGG	chr8:124286310-124286590(-)$1	280	145	151	9.7910
AGUUGG	chr11:62591500-62591748(-)$1	248	47	53	9.9402
AGCUGG	chr17:56585376-56585654(-)$1	278	75	81	13.7462
AUCUGG	chr2:27262590-27262851(+)$1	261	46	52	9.5671
AGCGGG	chr13:113530104-113530360(+)$1	256	37	43	9.7910
UGCUGG	chr19:8576186-8576466(-)$1	280	47	53	9.9402
AGGUGG	chr11:62652056-62652303(+)$1	247	104	110	9.8656
AGUUGG	chr3:169693366-169693633(+)$1	267	31	37	9.9402
AGCUGA	chr15:65822977-65823202(+)$1	225	62	68	9.4925
AGCUAG	chr12:57499786-57500110(-)$1	324	22	28	9.1194
AGCAGG	chr20:31294364-31294641(-)$1	277	106	112	9.9402
AGCUGG	chr11:62458360-62458648(-)$1	288	144	150	13.7462
AGCCGG	chr19:13229142-13229418(+)$1	276	225	231	9.7910
AGUUGG	chr6:82904071-82904335(-)$1	264	117	123	9.9402
cgcugg	chr13:53029638-53029952(+)$1	314	203	209	10.0149
GGCUGG	chr5:175956153-175956394(-)$1	241	160	166	10.7611
GGCUGG	chr16:2314030-2314292(-)$1	262	124	130	10.7611
GGCUGG	chr19:36593530-36593778(+)$1	248	41	47	10.7611
AGCUGC	chr7:158447886-158448140(-)$1	254	52	58	9.7164
GGCUGG	chr1:183441660-183441937(+)$1	277	140	146	10.7611
AACUGG	chr16:3735848-3736120(-)$1	272	41	47	9.4925
AGCUGG	chr1:44440659-44440938(+)$1	279	161	167	13.7462
GGCUGG	chr11:73587635-73587933(-)$1	298	31	37	10.7611
GGCUGG	chr19:18668602-18668857(+)$1	255	161	167	10.7611
AGCUGC	chr15:52538017-52538272(-)$1	255	59	65	9.7164
AGAUGG	chr17:73956152-73956421(-)$1	269	114	120	10.0149
AGCAGG	chr12:31242315-31242564(+)$1	249	99	105	9.9402
AGCAGG	chr20:32247669-32247951(-)$1	282	170	176	9.9402
AGGUGG	chr11:57529397-57529669(+)$1	272	15	21	9.8656
AGCUGG	chr3:184044314-184044558(+)$1	244	51	57	13.7462
AGAUGG	chr3:9985089-9985344(+)$1	255	74	80	10.0149
GGCUGG	chr12:125399024-125399254(-)$1	230	140	146	10.7611
AGCAGG	chr17:4792954-4793184(+)$1	230	99	105	9.9402
AGCUGU	chr16:4812117-4812399(-)$1	282	27	33	9.4179
AGAUGG	chr1:156303222-156303503(-)$1	281	137	143	10.0149
AUCUGG	chr1:42922899-42923152(+)$1	253	187	193	9.5671
GGCUGG	chr19:13260794-13261053(-)$1	259	186	192	10.7611
AGCUGG	chr20:33508380-33508647(+)$1	267	155	161	13.7462
AGCUGG	chr17:78023670-78023951(+)$1	281	113	119	13.7462
AGCUGC	chr12:121890774-121891048(-)$1	274	99	105	9.7164
ACCUGG	chr1:110580455-110580715(+)$1	260	76	82	9.5671
ACCUGG	chr16:720656-720876(+)$1	220	73	79	9.5671
AGCUGA	chr12:57928696-57928944(-)$1	248	77	83	9.4925
AGUUGG	chr11:72726717-72726978(-)$1	261	58	64	9.9402
AACUGG	chr20:42088744-42088992(+)$1	248	40	46	9.4925
AGCUAG	chr17:62497977-62498260(-)$1	283	23	29	9.1194
GGCUGG	chr11:65310433-65310677(-)$1	244	75	81	10.7611
AGCAGG	chr14:23793421-23793642(+)$1	221	51	57	9.9402
AGCGGG	chr2:242617665-242617986(-)$1	321	64	70	9.7910
AGCUGG	chr15:49913232-49913476(+)$1	244	43	49	13.7462

#otherMatches

#Struct PSSM
::gggg	chrX:30671610-30671823(+)$1	213	34	40	13.7462
[ggggg	chr19:39329395-39329641(-)$1	246	26	32	10.0149
dbbooo	chr2:32264336-32264666(-)$1	330	29	35	10.7611
dda[ff	chr2:175978585-175978866(-)$1	281	132	138	9.7164
gggg[d	chr7:100160163-100160410(+)$1	247	127	133	10.7611
[bbmmm	chr1:5927700-5927906(-)$1	206	5	11	9.7164
dddooo	chr12:58220643-58220913(-)$1	270	16	22	9.5671
ccc[bb	chr12:6675533-6675786(-)$1	253	107	113	13.7462
ppffff	chr17:4192382-4192640(-)$1	258	17	23	10.0149
dnnnnn	chr6:25691195-25691476(+)$1	281	146	152	9.0447
4444cc	chr7:6523443-6523729(-)$1	286	107	113	9.5671
mmgggg	chr11:67810832-67811106(+)$1	274	100	106	13.7462
eee:::	chr5:122848132-122848408(+)$1	276	220	226	10.7611
FFFF:H	chr12:54680393-54680623(+)$1	230	2	8	10.0149
eeeebb	chr3:184081048-184081355(+)$1	307	45	51	9.7910
HHHHHM	chr5:133984753-133985007(+)$1	254	20	26	9.7910
ggg::C	chr3:122811177-122811420(+)$1	243	24	30	9.8656
======	chr8:124286310-124286590(-)$1	280	145	151	9.7910
gg[ccc	chr11:62591500-62591748(-)$1	248	47	53	9.9402
:BBKKE	chr17:56585376-56585654(-)$1	278	75	81	13.7462
b]ffff	chr2:27262590-27262851(+)$1	261	46	52	9.5671
eeeccc	chr13:113530104-113530360(+)$1	256	37	43	9.7910
HHKKCC	chr19:8576186-8576466(-)$1	280	47	53	9.9402
bb[eee	chr11:62652056-62652303(+)$1	247	104	110	9.8656
a[eeee	chr3:169693366-169693633(+)$1	267	31	37	9.9402
2ggggg	chr15:65822977-65823202(+)$1	225	62	68	9.4925
[eeeee	chr12:57499786-57500110(-)$1	324	22	28	9.1194
KKAfff	chr20:31294364-31294641(-)$1	277	106	112	9.9402
BGGGGG	chr11:62458360-62458648(-)$1	288	144	150	13.7462
JJJJJJ	chr19:13229142-13229418(+)$1	276	225	231	9.7910
nnnnnc	chr6:82904071-82904335(-)$1	264	117	123	9.9402
gggg]b	chr13:53029638-53029952(+)$1	314	203	209	10.0149
ddddoo	chr5:175956153-175956394(-)$1	241	160	166	10.7611
]ddddd	chr16:2314030-2314292(-)$1	262	124	130	10.7611
""ffff	chr19:36593530-36593778(+)$1	248	41	47	10.7611
odddd2	chr7:158447886-158448140(-)$1	254	52	58	9.7164
dddd[b	chr1:183441660-183441937(+)$1	277	140	146	10.7611
:::EEE	chr16:3735848-3736120(-)$1	272	41	47	9.4925
!!bb[g	chr1:44440659-44440938(+)$1	279	161	167	13.7462
fff:::	chr11:73587635-73587933(-)$1	298	31	37	10.7611
[ccc""	chr19:18668602-18668857(+)$1	255	161	167	10.7611
[fffff	chr15:52538017-52538272(-)$1	255	59	65	9.7164
$$$$bb	chr17:73956152-73956421(-)$1	269	114	120	10.0149
occc:d	chr12:31242315-31242564(+)$1	249	99	105	9.9402
ggmmmm	chr20:32247669-32247951(-)$1	282	170	176	9.9402
:eeeee	chr11:57529397-57529669(+)$1	272	15	21	9.8656
gggg""	chr3:184044314-184044558(+)$1	244	51	57	13.7462
gggggn	chr3:9985089-9985344(+)$1	255	74	80	10.0149
iii[a[	chr12:125399024-125399254(-)$1	230	140	146	10.7611
[bb[ao	chr17:4792954-4793184(+)$1	230	99	105	9.9402
ddd[a[	chr16:4812117-4812399(-)$1	282	27	33	9.4179
f4444d	chr1:156303222-156303503(-)$1	281	137	143	10.0149
b333ee	chr1:42922899-42923152(+)$1	253	187	193	9.5671
h[bbnn	chr19:13260794-13261053(-)$1	259	186	192	10.7611
lfffff	chr20:33508380-33508647(+)$1	267	155	161	13.7462
bbb[cc	chr17:78023670-78023951(+)$1	281	113	119	13.7462
!fffff	chr12:121890774-121891048(-)$1	274	99	105	9.7164
cc]a]d	chr1:110580455-110580715(+)$1	260	76	82	9.5671
gggggg	chr16:720656-720876(+)$1	220	73	79	9.5671
6dddd3	chr12:57928696-57928944(-)$1	248	77	83	9.4925
FFF:hh	chr11:72726717-72726978(-)$1	261	58	64	9.9402
JJJJJJ	chr20:42088744-42088992(+)$1	248	40	46	9.4925
IIII:i	chr17:62497977-62498260(-)$1	283	23	29	9.1194
eeeeeh	chr11:65310433-65310677(-)$1	244	75	81	10.7611
dddd$$	chr14:23793421-23793642(+)$1	221	51	57	9.9402
eeemmm	chr2:242617665-242617986(-)$1	321	64	70	9.7910
eeee]c	chr15:49913232-49913476(+)$1	244	43	49	13.7462

#DB
..((((	chrX:30671610-30671823(+)$1	1	34	40	13.7462
.(((((	chr19:39329395-39329641(-)$1	1	26	32	10.0149
(((...	chr2:32264336-32264666(-)$1	1	29	35	10.7611
(((.((	chr2:175978585-175978866(-)$1	1	132	138	9.7164
((((.(	chr7:100160163-100160410(+)$1	1	127	133	10.7611
.((...	chr1:5927700-5927906(-)$1	1	5	11	9.7164
(((...	chr12:58220643-58220913(-)$1	1	16	22	9.5671
(((.((	chr12:6675533-6675786(-)$1	1	107	113	13.7462
..))))	chr17:4192382-4192640(-)$1	1	17	23	10.0149
(.....	chr6:25691195-25691476(+)$1	1	146	152	9.0447
....))	chr7:6523443-6523729(-)$1	1	107	113	9.5671
..))))	chr11:67810832-67811106(+)$1	1	100	106	13.7462
)))...	chr5:122848132-122848408(+)$1	1	220	226	10.7611
((((.(	chr12:54680393-54680623(+)$1	1	2	8	10.0149
((((((	chr3:184081048-184081355(+)$1	1	45	51	9.7910
(((((.	chr5:133984753-133985007(+)$1	1	20	26	9.7910
)))..(	chr3:122811177-122811420(+)$1	1	24	30	9.8656
))))))	chr8:124286310-124286590(-)$1	1	145	151	9.7910
((.(((	chr11:62591500-62591748(-)$1	1	47	53	9.9402
.((..(	chr17:56585376-56585654(-)$1	1	75	81	13.7462
).))))	chr2:27262590-27262851(+)$1	1	46	52	9.5671
((((((	chr13:113530104-113530360(+)$1	1	37	43	9.7910
((..((	chr19:8576186-8576466(-)$1	1	47	53	9.9402
((.(((	chr11:62652056-62652303(+)$1	1	104	110	9.8656
(.((((	chr3:169693366-169693633(+)$1	1	31	37	9.9402
.)))))	chr15:65822977-65823202(+)$1	1	62	68	9.4925
.(((((	chr12:57499786-57500110(-)$1	1	22	28	9.1194
..((((	chr20:31294364-31294641(-)$1	1	106	112	9.9402
))))))	chr11:62458360-62458648(-)$1	1	144	150	13.7462
))))))	chr19:13229142-13229418(+)$1	1	225	231	9.7910
.....)	chr6:82904071-82904335(-)$1	1	117	123	9.9402
)))).)	chr13:53029638-53029952(+)$1	1	203	209	10.0149
((((..	chr5:175956153-175956394(-)$1	1	160	166	10.7611
.)))))	chr16:2314030-2314292(-)$1	1	124	130	10.7611
..((((	chr19:36593530-36593778(+)$1	1	41	47	10.7611
.)))).	chr7:158447886-158448140(-)$1	1	52	58	9.7164
((((.(	chr1:183441660-183441937(+)$1	1	140	146	10.7611
...(((	chr16:3735848-3736120(-)$1	1	41	47	9.4925
..((.(	chr1:44440659-44440938(+)$1	1	161	167	13.7462
)))...	chr11:73587635-73587933(-)$1	1	31	37	10.7611
.(((..	chr19:18668602-18668857(+)$1	1	161	167	10.7611
.(((((	chr15:52538017-52538272(-)$1	1	59	65	9.7164
....((	chr17:73956152-73956421(-)$1	1	114	120	10.0149
.))).(	chr12:31242315-31242564(+)$1	1	99	105	9.9402
((....	chr20:32247669-32247951(-)$1	1	170	176	9.9402
.(((((	chr11:57529397-57529669(+)$1	1	15	21	9.8656
((((..	chr3:184044314-184044558(+)$1	1	51	57	13.7462
(((((.	chr3:9985089-9985344(+)$1	1	74	80	10.0149
(((.(.	chr12:125399024-125399254(-)$1	1	140	146	10.7611
.((.(.	chr17:4792954-4793184(+)$1	1	99	105	9.9402
(((.(.	chr16:4812117-4812399(-)$1	1	27	33	9.4179
)....)	chr1:156303222-156303503(-)$1	1	137	143	10.0149
)...))	chr1:42922899-42923152(+)$1	1	187	193	9.5671
(.((..	chr19:13260794-13261053(-)$1	1	186	192	10.7611
.)))))	chr20:33508380-33508647(+)$1	1	155	161	13.7462
(((.((	chr17:78023670-78023951(+)$1	1	113	119	13.7462
.(((((	chr12:121890774-121891048(-)$1	1	99	105	9.7164
)).).)	chr1:110580455-110580715(+)$1	1	76	82	9.5671
((((((	chr16:720656-720876(+)$1	1	73	79	9.5671
.)))).	chr12:57928696-57928944(-)$1	1	77	83	9.4925
(((.((	chr11:72726717-72726978(-)$1	1	58	64	9.9402
((((((	chr20:42088744-42088992(+)$1	1	40	46	9.4925
((((.(	chr17:62497977-62498260(-)$1	1	23	29	9.1194
)))))(	chr11:65310433-65310677(-)$1	1	75	81	10.7611
((((..	chr14:23793421-23793642(+)$1	1	51	57	9.9402
(((...	chr2:242617665-242617986(-)$1	1	64	70	9.7910
)))).)	chr15:49913232-49913476(+)$1	1	43	49	13.7462

#PSSM
A : 0.77	G : 0.16	C : 0.01	g : 0.01	U : 0.01	c : 0.01	
G : 0.85	C : 0.04	U : 0.04	g : 0.02	A : 0.02	
C : 0.79	A : 0.07	U : 0.05	G : 0.04	c : 0.02	
U : 0.80	A : 0.07	G : 0.04	C : 0.04	u : 0.02	
G : 0.92	g : 0.02	A : 0.02	U : 0.01	
G : 0.85	C : 0.07	g : 0.02	A : 0.02	U : 0.01	

#score	705.1044776119408
#seq	67
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_CDS_m2_run1.nuc.txt

#NT
aggcc	chr3:52027767-52028012(-)$1	245	132	137	15.0000
AGGCC	chrX:47001600-47001876(-)$1	276	87	92	15.0000
AGGCC	chr3:197677732-197677949(+)$1	217	72	77	15.0000
AGGCC	chr4:77969529-77969773(-)$1	244	122	127	15.0000
AGGCC	chr3:184026559-184026830(+)$1	271	160	165	15.0000
AGGCC	chr19:12907772-12908008(-)$1	236	210	215	15.0000
AGGCC	chr19:50191394-50191642(+)$1	248	107	112	15.0000
AGGCC	chr19:49990770-49991001(+)$1	231	178	183	15.0000
AGGCC	chr8:144662589-144662847(-)$1	258	116	121	15.0000
AGGCC	chr16:3708007-3708258(-)$1	251	109	114	15.0000
AGGCC	chr3:52028957-52029180(-)$1	223	178	183	15.0000
AGGCC	chr3:197680914-197681118(+)$1	204	78	83	15.0000
AGGCC	chr20:2451231-2451460(-)$1	229	71	76	15.0000
AGGCC	chr7:100883352-100883604(-)$1	252	86	91	15.0000
AGGCC	chr16:30081214-30081431(+)$1	217	56	61	15.0000
AGGCC	chr11:5290643-5290862(-)$1	219	48	53	15.0000
AGGCC	chr19:36641092-36641330(+)$1	238	121	126	15.0000
AGGCC	chr19:19638747-19639024(+)$1	277	186	191	15.0000
AGGCC	chr19:55967645-55967943(-)$1	298	102	107	15.0000
AGGCC	chr19:39924098-39924310(-)$1	212	52	57	15.0000
AGGCC	chr6:31747284-31747511(-)$1	227	167	172	15.0000
AGGCC	chr1:12091681-12091974(+)$1	293	95	100	15.0000
AGGCC	chr1:45241148-45241372(+)$1	224	173	178	15.0000
AGGCC	chr9:127620119-127620346(-)$1	227	142	147	15.0000
AGGCC	chr19:36640872-36641223(+)$1	351	114	119	15.0000
AGGCC	chr8:145584545-145584812(+)$1	267	212	217	15.0000
AGGCC	chr19:49119034-49119277(-)$1	243	16	21	15.0000
AGGCC	chr20:34129753-34130033(+)$1	280	32	37	15.0000
AGGCC	chr19:1395335-1395602(+)$1	267	72	77	15.0000
AGGCC	chr11:840365-840580(-)$1	215	4	9	15.0000
AGGCC	chr19:49994678-49994904(+)$1	226	129	134	15.0000
AGGCC	chrX:153063743-153063988(+)$1	245	137	142	15.0000
AGGCC	chr1:29520288-29520649(-)$1	361	4	9	15.0000
AGGCC	chr19:19638471-19638679(+)$1	208	3	8	15.0000
AGGCC	chr16:772344-772638(+)$1	294	124	129	15.0000
AGGCC	chrX:48760178-48760456(+)$1	278	61	66	15.0000
AGGCC	chr19:49119237-49119449(-)$1	212	188	193	15.0000
AGGCC	chr19:18685848-18686066(+)$1	218	146	151	15.0000
AGGCC	chr14:50052902-50053105(-)$1	203	175	180	15.0000
AGGCC	chr12:53692952-53693226(+)$1	274	169	174	15.0000
AGGCC	chr19:18054363-18054685(+)$1	322	223	228	15.0000
AGGCC	chr7:128502866-128503102(+)$1	236	11	16	15.0000
AGGCC	chr9:19376399-19376618(-)$1	219	198	203	15.0000
AGGCC	chr19:59061643-59061847(+)$1	204	161	166	15.0000
AGGCC	chr11:8707220-8707479(+)$1	259	59	64	15.0000
aggcc	chr16:88709752-88710011(-)$1	259	147	152	15.0000
aggCC	chr19:35758392-35758719(+)$1	327	168	173	15.0000
AGGCC	chr1:24018199-24018420(+)$1	221	70	75	15.0000

#otherMatches

#Struct PSSM
!hhhh	chr1:43827765-43827996(+)$1	231	144	149	15.0000
:dddd	chr3:52027767-52028012(-)$1	245	132	137	15.0000
eeee"	chrX:47001600-47001876(-)$1	276	87	92	15.0000
6dddd	chr3:197677732-197677949(+)$1	217	72	77	15.0000
dddad	chr4:77969529-77969773(-)$1	244	122	127	15.0000
gggqq	chr3:184026559-184026830(+)$1	271	160	165	15.0000
3cccc	chr19:12907772-12908008(-)$1	236	210	215	15.0000
bb[cc	chr19:50191394-50191642(+)$1	248	107	112	15.0000
ttttt	chr19:49990770-49991001(+)$1	231	178	183	15.0000
7dddd	chr8:144662589-144662847(-)$1	258	116	121	15.0000
]hhhh	chr16:3708007-3708258(-)$1	251	109	114	15.0000
EEEEE	chr3:52028957-52029180(-)$1	223	178	183	15.0000
hhhdd	chr3:197680914-197681118(+)$1	204	78	83	15.0000
llfff	chr20:2451231-2451460(-)$1	229	71	76	15.0000
}BB::	chr7:100883352-100883604(-)$1	252	86	91	15.0000
ggggg	chr16:30081214-30081431(+)$1	217	56	61	15.0000
44eee	chr11:5290643-5290862(-)$1	219	48	53	15.0000
DDDFF	chr19:36641092-36641330(+)$1	238	121	126	15.0000
eee[b	chr19:19638747-19639024(+)$1	277	186	191	15.0000
ggggg	chr19:55967645-55967943(-)$1	298	102	107	15.0000
mmmee	chr19:39924098-39924310(-)$1	212	52	57	15.0000
eeeef	chr6:31747284-31747511(-)$1	227	167	172	15.0000
DDDKK	chr1:12091681-12091974(+)$1	293	95	100	15.0000
dd]ac	chr1:45241148-45241372(+)$1	224	173	178	15.0000
EEEEE	chr9:127620119-127620346(-)$1	227	142	147	15.0000
fffff	chr19:36640872-36641223(+)$1	351	114	119	15.0000
cc!!c	chr8:145584545-145584812(+)$1	267	212	217	15.0000
fff!!	chr19:49119034-49119277(-)$1	243	16	21	15.0000
[iiii	chr20:34129753-34130033(+)$1	280	32	37	15.0000
2dddd	chr19:1395335-1395602(+)$1	267	72	77	15.0000
{IIII	chr11:840365-840580(-)$1	215	4	9	15.0000
D}FFF	chr19:49994678-49994904(+)$1	226	129	134	15.0000
FFFFF	chrX:153063743-153063988(+)$1	245	137	142	15.0000
dddd!	chr1:29520288-29520649(-)$1	361	4	9	15.0000
{BB{F	chr19:19638471-19638679(+)$1	208	3	8	15.0000
!bbdd	chr16:772344-772638(+)$1	294	124	129	15.0000
ddd%%	chrX:48760178-48760456(+)$1	278	61	66	15.0000
fff33	chr19:49119237-49119449(-)$1	212	188	193	15.0000
:dddd	chr19:18685848-18686066(+)$1	218	146	151	15.0000
:DDDD	chr14:50052902-50053105(-)$1	203	175	180	15.0000
qffff	chr12:53692952-53693226(+)$1	274	169	174	15.0000
ooooo	chr19:18054363-18054685(+)$1	322	223	228	15.0000
::ddd	chr7:128502866-128503102(+)$1	236	11	16	15.0000
4dddd	chr9:19376399-19376618(-)$1	219	198	203	15.0000
eeeee	chr19:59061643-59061847(+)$1	204	161	166	15.0000
dddd:	chr11:8707220-8707479(+)$1	259	59	64	15.0000
###bb	chr16:88709752-88710011(-)$1	259	147	152	15.0000
{BBQQ	chr19:35758392-35758719(+)$1	327	168	173	15.0000
DDDDK	chr1:24018199-24018420(+)$1	221	70	75	15.0000

#DB
.((((	chr1:43827765-43827996(+)$1	1	144	149	15.0000
.((((	chr3:52027767-52028012(-)$1	1	132	137	15.0000
((((.	chrX:47001600-47001876(-)$1	1	87	92	15.0000
.))))	chr3:197677732-197677949(+)$1	1	72	77	15.0000
)))))	chr4:77969529-77969773(-)$1	1	122	127	15.0000
(((..	chr3:184026559-184026830(+)$1	1	160	165	15.0000
.))))	chr19:12907772-12908008(-)$1	1	210	215	15.0000
((.((	chr19:50191394-50191642(+)$1	1	107	112	15.0000
.....	chr19:49990770-49991001(+)$1	1	178	183	15.0000
.))))	chr8:144662589-144662847(-)$1	1	116	121	15.0000
.))))	chr16:3708007-3708258(-)$1	1	109	114	15.0000
)))))	chr3:52028957-52029180(-)$1	1	178	183	15.0000
(((((	chr3:197680914-197681118(+)$1	1	78	83	15.0000
..)))	chr20:2451231-2451460(-)$1	1	71	76	15.0000
.))..	chr7:100883352-100883604(-)$1	1	86	91	15.0000
(((((	chr16:30081214-30081431(+)$1	1	56	61	15.0000
..)))	chr11:5290643-5290862(-)$1	1	48	53	15.0000
(((((	chr19:36641092-36641330(+)$1	1	121	126	15.0000
(((.(	chr19:19638747-19639024(+)$1	1	186	191	15.0000
)))))	chr19:55967645-55967943(-)$1	1	102	107	15.0000
...))	chr19:39924098-39924310(-)$1	1	52	57	15.0000
)))))	chr6:31747284-31747511(-)$1	1	167	172	15.0000
(((..	chr1:12091681-12091974(+)$1	1	95	100	15.0000
)).))	chr1:45241148-45241372(+)$1	1	173	178	15.0000
)))))	chr9:127620119-127620346(-)$1	1	142	147	15.0000
)))))	chr19:36640872-36641223(+)$1	1	114	119	15.0000
((..(	chr8:145584545-145584812(+)$1	1	212	217	15.0000
(((..	chr19:49119034-49119277(-)$1	1	16	21	15.0000
.((((	chr20:34129753-34130033(+)$1	1	32	37	15.0000
.))))	chr19:1395335-1395602(+)$1	1	72	77	15.0000
.((((	chr11:840365-840580(-)$1	1	4	9	15.0000
).)))	chr19:49994678-49994904(+)$1	1	129	134	15.0000
)))))	chrX:153063743-153063988(+)$1	1	137	142	15.0000
((((.	chr1:29520288-29520649(-)$1	1	4	9	15.0000
.((.(	chr19:19638471-19638679(+)$1	1	3	8	15.0000
.((((	chr16:772344-772638(+)$1	1	124	129	15.0000
(((..	chrX:48760178-48760456(+)$1	1	61	66	15.0000
)))..	chr19:49119237-49119449(-)$1	1	188	193	15.0000
.((((	chr19:18685848-18686066(+)$1	1	146	151	15.0000
.))))	chr14:50052902-50053105(-)$1	1	175	180	15.0000
.))))	chr12:53692952-53693226(+)$1	1	169	174	15.0000
.....	chr19:18054363-18054685(+)$1	1	223	228	15.0000
..(((	chr7:128502866-128503102(+)$1	1	11	16	15.0000
.))))	chr9:19376399-19376618(-)$1	1	198	203	15.0000
)))))	chr19:59061643-59061847(+)$1	1	161	166	15.0000
)))).	chr11:8707220-8707479(+)$1	1	59	64	15.0000
...((	chr16:88709752-88710011(-)$1	1	147	152	15.0000
.((..	chr19:35758392-35758719(+)$1	1	168	173	15.0000
((((.	chr1:24018199-24018420(+)$1	1	70	75	15.0000

#PSSM
A : 0.93	a : 0.06	
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	

#score	735.0000000000001
#seq	49
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_CDS_m1_run1.nuc.txt

#NT
ggggccggagg	chr17:1359219-1359472(-)$1	253	4	15	19.9090
ggggccggggg	chr4:667804-668112(+)$1	308	103	114	24.2727
ggggccugggg	chr16:29818189-29818441(-)$1	252	108	119	19.7272
ggggguggggg	chr17:7232371-7232700(-)$1	329	129	140	23.0909
GGGGCGGGGCG	chr1:38273938-38274197(+)$1	259	48	59	19.4545
GGGGCUGGGAG	chr19:56133017-56133288(-)$1	271	39	50	22.0909
GGGGGUGGGGG	chr17:58469168-58469454(-)$1	286	101	112	23.0909
GGGGCUGCGGG	chr3:195622172-195622530(-)$1	358	305	316	22.3636
cgggccggggg	chr8:25315659-25315948(-)$1	289	259	270	19.7272
ggggccggggg	chr16:29818307-29818552(-)$1	245	99	110	24.2727
GGGGCUGCGGG	chr11:61197014-61197365(-)$1	351	275	286	22.3636
GGGGGUGGGUG	chr16:69165156-69165419(-)$1	263	23	34	19.0000
ggggcugcggg	chr3:52567648-52567901(-)$1	253	159	170	22.3636
GGGGCAGGCGG	chr9:139944598-139944844(-)$1	246	116	127	19.5454
ggggguggggg	chr2:54197788-54198048(-)$1	260	100	111	23.0909
GGGGCUGGGGG	chr17:48546066-48546341(+)$1	275	127	138	26.0000
GGGGGUGGGGG	chr16:4744417-4744680(+)$1	263	0	11	23.0909
ggggcccgggg	chr2:231902416-231902702(+)$1	286	85	96	19.9090
GGGGGUGGGGG	chr22:20110050-20110328(+)$1	278	243	254	23.0909
GGGGCCGAGGG	chr17:36760606-36760863(-)$1	257	114	125	20.2727
GGGGGUGGGGG	chr17:58469092-58469368(-)$1	276	15	26	23.0909
GGGGCGGGGGG	chr8:145016484-145016764(-)$1	280	87	98	23.5454
GGGGCGGGUGG	chr16:90086226-90086515(+)$1	289	79	90	19.0909
GGGGCCGGGCG	chr17:78178894-78179161(-)$1	267	244	255	20.1818
GGGGGUGGGGC	chr3:126722009-126722292(+)$1	283	100	111	18.7272
GGGGCUCGGGG	chr16:22019511-22019740(+)$1	229	77	88	21.6363
ggggcagcggg	chr20:62371220-62371504(+)$1	284	262	273	20.2727
ggggccggggg	chr8:30669798-30670096(-)$1	298	82	93	24.2727
ggggcugggug	chr17:41622773-41623044(+)$1	271	103	114	21.9090
GGAGCUGGGGG	chr19:2270396-2270669(+)$1	273	118	129	21.8181
GGGGCUGGGAG	chr19:1468758-1469053(-)$1	295	97	108	22.0909
cgggguggggg	chr19:47778073-47778346(+)$1	273	31	42	18.5454
ggggagggggg	chr6:48036237-48036484(-)$1	247	23	34	19.7272
ggggcugcggg	chr16:431635-431933(-)$1	298	272	283	22.3636
ggggcuguggg	chr17:78346837-78347145(-)$1	308	132	143	21.9090
ggggcaggcgg	chr7:766827-767136(-)$1	309	17	28	19.5454
GCGGCUGGGGG	chr19:49964899-49965126(+)$1	227	188	199	21.1818
GGGGCCGGGGA	chr16:723884-724205(+)$1	321	10	21	19.9090
ggggcugggag	chr1:976401-976672(+)$1	271	56	67	22.0909
GGGCCUGGGGG	chr17:79913314-79913580(-)$1	266	29	40	21.1818
GGGGCUGGGGU	chr14:23991564-23991835(+)$1	271	103	114	21.5454
GGAGCUGGGGG	chr19:2270305-2270593(+)$1	288	209	220	21.8181
GGGGCAGAGGG	chr8:145017846-145018089(-)$1	243	178	189	19.9090
GGGGCAGGAGG	chr22:51153099-51153424(+)$1	325	195	206	19.5454
GGAGCUGGGGG	chr19:2270512-2270768(+)$1	256	2	13	21.8181
ggggcugcggg	chr3:52567594-52567848(-)$1	254	106	117	22.3636
ggggcccgggg	chr7:766761-767001(-)$1	240	31	42	19.9090
GGCGCAGGGGG	chr6:33178889-33179179(+)$1	290	208	219	19.4545
GGGGGAGGGGG	chr10:104503716-104503992(+)$1	276	188	199	21.0000
ggggcuggggc	chr19:10222219-10222520(+)$1	301	86	97	21.6363
GGAGCCGGGGG	chr18:30350900-30351164(+)$1	264	119	130	20.0909
AGGGCUGGGGG	chr16:75270602-75270832(-)$1	230	139	150	21.3636
GGGGCUGGGAG	chr16:4744294-4744564(+)$1	270	95	106	22.0909
GGGGGUGGGGG	chr19:42752575-42752831(-)$1	256	53	64	23.0909

#otherMatches

#Struct PSSM
333bbDDDDYY	chr21:47565680-47565899(-)$1	219	183	194	19.5454
BB{CCC:::dd	chr17:1359219-1359472(-)$1	253	4	15	19.9090
a[ddddllldd	chr4:667804-668112(+)$1	308	103	114	24.2727
a[hhhhhhhh[	chr16:29818189-29818441(-)$1	252	108	119	19.7272
[eeeeemmmme	chr17:7232371-7232700(-)$1	329	129	140	23.0909
bbbgggggggl	chr1:38273938-38274197(+)$1	259	48	59	19.4545
qqdddd]a::f	chr19:56133017-56133288(-)$1	271	39	50	22.0909
gggggg[eeee	chr17:58469168-58469454(-)$1	286	101	112	23.0909
ccc]bb]eeee	chr3:195622172-195622530(-)$1	358	305	316	22.3636
B}FFFFFF::c	chr8:25315659-25315948(-)$1	289	259	270	19.7272
:::dddd[bbb	chr16:29818307-29818552(-)$1	245	99	110	24.2727
##hhhhhhhho	chr11:61197014-61197365(-)$1	351	275	286	22.3636
JJ{CCC{CCCK	chr16:69165156-69165419(-)$1	263	23	34	19.0000
d[ccc[bb[dd	chr3:52567648-52567901(-)$1	253	159	170	22.3636
IIIIIIII}BB	chr9:139944598-139944844(-)$1	246	116	127	19.5454
"ccc[a[eeee	chr2:54197788-54198048(-)$1	260	100	111	23.0909
d!!ddddmmmm	chr17:48546066-48546341(+)$1	275	127	138	26.0000
::eeeee!!cc	chr16:4744417-4744680(+)$1	263	0	11	23.0909
ffffdddd]==	chr2:231902416-231902702(+)$1	286	85	96	19.9090
YYDDDDFFFFF	chr22:20110050-20110328(+)$1	278	243	254	23.0909
bb:CCCDDDD}	chr17:36760606-36760863(-)$1	257	114	125	20.2727
gggggg[eeee	chr17:58469092-58469368(-)$1	276	15	26	23.0909
cbbiiiiiiii	chr8:145016484-145016764(-)$1	280	87	98	23.5454
FDDDDJJJJJJ	chr16:90086226-90086515(+)$1	289	79	90	19.0909
22acccfffff	chr17:78178894-78179161(-)$1	267	244	255	20.1818
ffffffggggg	chr3:126722009-126722292(+)$1	283	100	111	18.7272
===========	chr16:22019511-22019740(+)$1	229	77	88	21.6363
HHHGGGGGGG}	chr20:62371220-62371504(+)$1	284	262	273	20.2727
333dddd22a]	chr8:30669798-30670096(-)$1	298	82	93	24.2727
CCJJJJJJJJJ	chr17:41622773-41623044(+)$1	271	103	114	21.9090
f!!a[a[ffff	chr19:2270396-2270669(+)$1	273	118	129	21.8181
lla]iiiiiii	chr19:1468758-1469053(-)$1	295	97	108	22.0909
{HHHHHHHH{B	chr19:47778073-47778346(+)$1	273	31	42	18.5454
JJJJJJJJJJ:	chr6:48036237-48036484(-)$1	247	23	34	19.7272
]a]ccc]a:EE	chr16:431635-431933(-)$1	298	272	283	22.3636
hhhhhhh[bb[	chr17:78346837-78347145(-)$1	308	132	143	21.9090
HDDDD{DDDDK	chr7:766827-767136(-)$1	309	17	28	19.5454
ccHHHHHHHHf	chr19:49964899-49965126(+)$1	227	188	199	21.1818
EEEEKKJJJJJ	chr16:723884-724205(+)$1	321	10	21	19.9090
IIIIIIINNNN	chr1:976401-976672(+)$1	271	56	67	22.0909
HHHHHHH{DDD	chr17:79913314-79913580(-)$1	266	29	40	21.1818
eeee22dddd]	chr14:23991564-23991835(+)$1	271	103	114	21.5454
iiiiigggggg	chr19:2270305-2270593(+)$1	288	209	220	21.8181
eeeee[a[eee	chr8:145017846-145018089(-)$1	243	178	189	19.9090
ccc[bbnnnnn	chr22:51153099-51153424(+)$1	325	195	206	19.5454
ggggggggggg	chr19:2270512-2270768(+)$1	256	2	13	21.8181
d[ccc[bb[dd	chr3:52567594-52567848(-)$1	254	106	117	22.3636
:::ffffffqq	chr7:766761-767001(-)$1	240	31	42	19.9090
ddccc4444hh	chr6:33178889-33179179(+)$1	290	208	219	19.4545
eeeee:bb[cc	chr10:104503716-104503992(+)$1	276	188	199	21.0000
DDDNNNNNA{C	chr19:10222219-10222520(+)$1	301	86	97	21.6363
e::dddd!!cc	chr18:30350900-30351164(+)$1	264	119	130	20.0909
BYYHHHHHHHH	chr16:75270602-75270832(-)$1	230	139	150	21.3636
]bb]dddd22e	chr16:4744294-4744564(+)$1	270	95	106	22.0909
mffffffhhhh	chr19:42752575-42752831(-)$1	256	53	64	23.0909

#DB
...))))))..	chr21:47565680-47565899(-)$1	1	183	194	19.5454
((.(((...((	chr17:1359219-1359472(-)$1	1	4	15	19.9090
(.((((...))	chr4:667804-668112(+)$1	1	103	114	24.2727
(.((((((((.	chr16:29818189-29818441(-)$1	1	108	119	19.7272
.(((((....)	chr17:7232371-7232700(-)$1	1	129	140	23.0909
)))(((((((.	chr1:38273938-38274197(+)$1	1	48	59	19.4545
..)))).)..(	chr19:56133017-56133288(-)$1	1	39	50	22.0909
((((((.((((	chr17:58469168-58469454(-)$1	1	101	112	23.0909
))).)).))))	chr3:195622172-195622530(-)$1	1	305	316	22.3636
).))))))..(	chr8:25315659-25315948(-)$1	1	259	270	19.7272
...((((.(((	chr16:29818307-29818552(-)$1	1	99	110	24.2727
..((((((((.	chr11:61197014-61197365(-)$1	1	275	286	22.3636
((.(((.(((.	chr16:69165156-69165419(-)$1	1	23	34	19.0000
(.(((.((.((	chr3:52567648-52567901(-)$1	1	159	170	22.3636
)))))))).))	chr9:139944598-139944844(-)$1	1	116	127	19.5454
.(((.(.((((	chr2:54197788-54198048(-)$1	1	100	111	23.0909
(..((((....	chr17:48546066-48546341(+)$1	1	127	138	26.0000
..(((((..((	chr16:4744417-4744680(+)$1	1	0	11	23.0909
)))))))).))	chr2:231902416-231902702(+)$1	1	85	96	19.9090
..)))))))))	chr22:20110050-20110328(+)$1	1	243	254	23.0909
)).))))))).	chr17:36760606-36760863(-)$1	1	114	125	20.2727
((((((.((((	chr17:58469092-58469368(-)$1	1	15	26	23.0909
)))))))))))	chr8:145016484-145016764(-)$1	1	87	98	23.5454
)))))((((((	chr16:90086226-90086515(+)$1	1	79	90	19.0909
..)))))))))	chr17:78178894-78179161(-)$1	1	244	255	20.1818
))))))(((((	chr3:126722009-126722292(+)$1	1	100	111	18.7272
)))))))))))	chr16:22019511-22019740(+)$1	1	77	88	21.6363
)))))))))).	chr20:62371220-62371504(+)$1	1	262	273	20.2727
...))))..).	chr8:30669798-30670096(-)$1	1	82	93	24.2727
(((((((((((	chr17:41622773-41623044(+)$1	1	103	114	21.9090
(..(.(.((((	chr19:2270396-2270669(+)$1	1	118	129	21.8181
..).)))))))	chr19:1468758-1469053(-)$1	1	97	108	22.0909
.((((((((.(	chr19:47778073-47778346(+)$1	1	31	42	18.5454
((((((((((.	chr6:48036237-48036484(-)$1	1	23	34	19.7272
.).))).).))	chr16:431635-431933(-)$1	1	272	283	22.3636
(((((((.((.	chr17:78346837-78347145(-)$1	1	132	143	21.9090
(((((.((((.	chr7:766827-767136(-)$1	1	17	28	19.5454
))))))))))(	chr19:49964899-49965126(+)$1	1	188	199	21.1818
((((..(((((	chr16:723884-724205(+)$1	1	10	21	19.9090
(((((((....	chr1:976401-976672(+)$1	1	56	67	22.0909
(((((((.(((	chr17:79913314-79913580(-)$1	1	29	40	21.1818
))))..)))).	chr14:23991564-23991835(+)$1	1	103	114	21.5454
(((((((((((	chr19:2270305-2270593(+)$1	1	209	220	21.8181
(((((.(.(((	chr8:145017846-145018089(-)$1	1	178	189	19.9090
(((.((.....	chr22:51153099-51153424(+)$1	1	195	206	19.5454
(((((((((((	chr19:2270512-2270768(+)$1	1	2	13	21.8181
(.(((.((.((	chr3:52567594-52567848(-)$1	1	106	117	22.3636
...((((((..	chr7:766761-767001(-)$1	1	31	42	19.9090
)))))....))	chr6:33178889-33179179(+)$1	1	208	219	19.4545
))))).((.((	chr10:104503716-104503992(+)$1	1	188	199	21.0000
(((.....(.(	chr19:10222219-10222520(+)$1	1	86	97	21.6363
)..((((..((	chr18:30350900-30351164(+)$1	1	119	130	20.0909
)..))))))))	chr16:75270602-75270832(-)$1	1	139	150	21.3636
.)).))))..)	chr16:4744294-4744564(+)$1	1	95	106	22.0909
.))))))((((	chr19:42752575-42752831(-)$1	1	53	64	23.0909

#PSSM
G : 0.58	g : 0.36	c : 0.03	A : 0.01	
G : 0.58	g : 0.40	C : 0.01	
G : 0.50	g : 0.40	A : 0.07	C : 0.01	
G : 0.58	g : 0.40	C : 0.01	
C : 0.45	c : 0.32	G : 0.14	g : 0.05	a : 0.01	
U : 0.38	u : 0.18	c : 0.14	A : 0.09	C : 0.07	a : 0.05	G : 0.05	g : 0.01	
G : 0.58	g : 0.34	c : 0.03	u : 0.01	C : 0.01	
G : 0.52	g : 0.30	c : 0.07	C : 0.03	A : 0.03	u : 0.01	
G : 0.54	g : 0.36	a : 0.01	C : 0.01	U : 0.01	c : 0.01	A : 0.01	
G : 0.49	g : 0.36	A : 0.05	C : 0.03	U : 0.01	u : 0.01	a : 0.01	
G : 0.54	g : 0.36	a : 0.01	C : 0.01	A : 0.01	U : 0.01	c : 0.01	

#score	1175.0000000000005
#seq	55
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_transcript_m3_run2.nuc.txt

#NT
CCAG	chr20:33622826-33623068(-)$1	242	38	42	11.9999
CCAG	chr10:93753435-93753681(+)$1	246	17	21	11.9999
CCAG	chr2:227663319-227663584(-)$1	265	25	29	11.9999
CCAG	chr3:52525789-52526010(+)$1	221	43	47	11.9999
CCAG	chr9:117054286-117054546(+)$1	260	20	24	11.9999
CCAG	chr12:57556164-57556395(+)$1	231	123	127	11.9999
CCAG	chr19:47422453-47422731(+)$1	278	6	10	11.9999
CCAG	chr6:90503545-90503767(-)$1	222	109	113	11.9999
CCAG	chr12:112694128-112694382(-)$1	254	82	86	11.9999
CCAG	chr14:55169085-55169399(+)$1	314	198	202	11.9999
CCAG	chr9:134351615-134351860(+)$1	245	97	101	11.9999
CCAG	chrX:18928889-18929129(-)$1	240	47	51	11.9999
CCAG	chr3:184107101-184107385(+)$1	284	49	53	11.9999
ccag	chr8:25101101-25101373(+)$1	272	37	41	11.9999
CCAG	chr16:2821002-2821275(+)$1	273	142	146	11.9999
CCAG	chr15:91462931-91463242(+)$1	311	186	190	11.9999
CCAG	chr11:57075939-57076192(-)$1	253	42	46	11.9999
CCAG	chr12:71977751-71978024(+)$1	273	197	201	11.9999
CCAG	chr11:71725864-71726133(-)$1	269	44	48	11.9999
CCAG	chr21:47610272-47610528(-)$1	256	20	24	11.9999
CCAG	chr6:159053288-159053517(+)$1	229	123	127	11.9999
CCAG	chr1:19486506-19486715(-)$1	209	11	15	11.9999
CCAG	chr11:71723854-71724112(-)$1	258	141	145	11.9999
CCAG	chr1:19484291-19484550(-)$1	259	55	59	11.9999
CCAG	chr15:65158152-65158432(+)$1	280	112	116	11.9999
CCAG	chr22:41513277-41513522(+)$1	245	116	120	11.9999
CCAG	chrX:54949290-54949541(+)$1	251	2	6	11.9999
CCAG	chr9:116929963-116930204(+)$1	241	18	22	11.9999
CCAG	chr1:19500815-19501033(-)$1	218	172	176	11.9999
CCAG	chr9:6849407-6849674(+)$1	267	95	99	11.9999
ccag	chr19:10490190-10490428(-)$1	238	59	63	11.9999
CCAG	chr1:19477081-19477326(-)$1	245	56	60	11.9999
CCAG	chrX:70782929-70783192(+)$1	263	146	150	11.9999
CCAG	chr11:85375793-85376021(-)$1	228	3	7	11.9999
CCAG	chr9:117044636-117044853(+)$1	217	169	173	11.9999
CCAG	chr9:135203007-135203272(-)$1	265	187	191	11.9999
CCAG	chr1:214170605-214170858(+)$1	253	25	29	11.9999
CCAG	chr9:71835697-71835949(+)$1	252	21	25	11.9999
CCAG	chr1:171506391-171506679(+)$1	288	44	48	11.9999
ccag	chr9:116968446-116968660(+)$1	214	22	26	11.9999
CCAG	chr2:74669289-74669613(-)$1	324	202	206	11.9999
CCAG	chr17:7366181-7366434(-)$1	253	116	120	11.9999
ccag	chr7:99636534-99636775(+)$1	241	51	55	11.9999
CCAG	chr2:11772131-11772340(+)$1	209	81	85	11.9999
CCAG	chr22:21150340-21150616(-)$1	276	145	149	11.9999
CCAG	chr16:2153619-2153866(-)$1	247	58	62	11.9999
CCAG	chr17:56572310-56572580(-)$1	270	140	144	11.9999
CCAG	chr4:187540998-187541287(-)$1	289	132	136	11.9999
CCAG	chr16:2153504-2153728(-)$1	224	19	23	11.9999
CCAG	chr15:28377772-28378011(-)$1	239	194	198	11.9999
CCAG	chr3:53851321-53851593(-)$1	272	17	21	11.9999
CCAG	chr16:87367454-87367715(-)$1	261	26	30	11.9999
CCAG	chr6:151247155-151247380(+)$1	225	41	45	11.9999
CCAG	chr6:34856977-34857326(+)$1	349	97	101	11.9999
CCAG	chr16:58616861-58617082(-)$1	221	53	57	11.9999
CCAG	chr2:74273782-74274021(+)$1	239	90	94	11.9999
CCAG	chr17:56573360-56573617(-)$1	257	153	157	11.9999
CCAG	chr19:57802420-57802719(+)$1	299	83	87	11.9999
CCAG	chr8:100479611-100479869(+)$1	258	247	251	11.9999
ccag	chr1:22222320-22222560(-)$1	240	24	28	11.9999
CCAG	chr12:120576026-120576230(-)$1	204	138	142	11.9999
CCAG	chr4:155511742-155511986(-)$1	244	126	130	11.9999
CCAG	chr16:2814224-2814487(+)$1	263	165	169	11.9999
CCAG	chr1:19483273-19483516(-)$1	243	59	63	11.9999
CCAG	chr17:3513778-3514054(-)$1	276	20	24	11.9999
CCAG	chr5:14358186-14358448(+)$1	262	61	65	11.9999
CCAG	chr9:96051696-96051997(+)$1	301	112	116	11.9999
CCAG	chr6:90504196-90504471(-)$1	275	24	28	11.9999
CCAG	chr22:23523027-23523352(+)$1	325	269	273	11.9999
CCAG	chr1:19446009-19446268(-)$1	259	78	82	11.9999
CCAG	chr16:18853513-18853769(-)$1	256	117	121	11.9999
CCAG	chr20:61597975-61598184(+)$1	209	130	134	11.9999
CCAG	chr17:3513286-3513532(-)$1	246	35	39	11.9999
CCAG	chr7:98554026-98554238(+)$1	212	20	24	11.9999
CCAG	chr7:103629483-103629724(-)$1	241	193	197	11.9999
CCAG	chr10:103899348-103899572(+)$1	224	0	4	11.9999
CCAG	chr1:110884324-110884606(+)$1	282	3	7	11.9999
CCAG	chr3:183889247-183889518(+)$1	271	23	27	11.9999
CCAG	chr1:234599547-234599780(-)$1	233	104	108	11.9999
CCAG	chr6:160453601-160453827(+)$1	226	133	137	11.9999
CCAG	chr9:117068699-117068904(+)$1	205	9	13	11.9999
CCAG	chr6:144808583-144808791(+)$1	208	96	100	11.9999
CCAG	chrX:70787469-70787686(+)$1	217	35	39	11.9999

#otherMatches

#Struct PSSM
IIII	chr5:14297182-14297472(+)$1	290	174	178	11.9999
eeee	chr20:33622826-33623068(-)$1	242	38	42	11.9999
$$$$	chr10:93753435-93753681(+)$1	246	17	21	11.9999
JJJJ	chr2:227663319-227663584(-)$1	265	25	29	11.9999
ssss	chr3:52525789-52526010(+)$1	221	43	47	11.9999
GGGG	chr9:117054286-117054546(+)$1	260	20	24	11.9999
ee!!	chr12:57556164-57556395(+)$1	231	123	127	11.9999
cc[f	chr19:47422453-47422731(+)$1	278	6	10	11.9999
f444	chr6:90503545-90503767(-)$1	222	109	113	11.9999
gggg	chr12:112694128-112694382(-)$1	254	82	86	11.9999
d!!b	chr14:55169085-55169399(+)$1	314	198	202	11.9999
a22a	chr9:134351615-134351860(+)$1	245	97	101	11.9999
BBii	chrX:18928889-18929129(-)$1	240	47	51	11.9999
hhhh	chr3:184107101-184107385(+)$1	284	49	53	11.9999
]bbc	chr8:25101101-25101373(+)$1	272	37	41	11.9999
dd22	chr16:2821002-2821275(+)$1	273	142	146	11.9999
:bbo	chr15:91462931-91463242(+)$1	311	186	190	11.9999
ddd:	chr11:57075939-57076192(-)$1	253	42	46	11.9999
JJJB	chr12:71977751-71978024(+)$1	273	197	201	11.9999
cc!!	chr11:71725864-71726133(-)$1	269	44	48	11.9999
DD{E	chr21:47610272-47610528(-)$1	256	20	24	11.9999
3ggg	chr6:159053288-159053517(+)$1	229	123	127	11.9999
ECCC	chr1:19486506-19486715(-)$1	209	11	15	11.9999
gggg	chr11:71723854-71724112(-)$1	258	141	145	11.9999
$$$b	chr1:19484291-19484550(-)$1	259	55	59	11.9999
ffff	chr15:65158152-65158432(+)$1	280	112	116	11.9999
cccI	chr22:41513277-41513522(+)$1	245	116	120	11.9999
{DDD	chrX:54949290-54949541(+)$1	251	2	6	11.9999
ffff	chr9:116929963-116930204(+)$1	241	18	22	11.9999
ffff	chr1:19500815-19501033(-)$1	218	172	176	11.9999
e[cc	chr9:6849407-6849674(+)$1	267	95	99	11.9999
ffnn	chr19:10490190-10490428(-)$1	238	59	63	11.9999
bbmm	chr1:19477081-19477326(-)$1	245	56	60	11.9999
cnnn	chrX:70782929-70783192(+)$1	263	146	150	11.9999
dddd	chr11:85375793-85376021(-)$1	228	3	7	11.9999
HHHH	chr9:117044636-117044853(+)$1	217	169	173	11.9999
YYBB	chr9:135203007-135203272(-)$1	265	187	191	11.9999
lfff	chr1:214170605-214170858(+)$1	253	25	29	11.9999
DDDD	chr9:71835697-71835949(+)$1	252	21	25	11.9999
xxxe	chr1:171506391-171506679(+)$1	288	44	48	11.9999
cccm	chr9:116968446-116968660(+)$1	214	22	26	11.9999
FFF}	chr2:74669289-74669613(-)$1	324	202	206	11.9999
gggg	chr17:7366181-7366434(-)$1	253	116	120	11.9999
dd]d	chr7:99636534-99636775(+)$1	241	51	55	11.9999
gggg	chr2:11772131-11772340(+)$1	209	81	85	11.9999
CCBB	chr22:21150340-21150616(-)$1	276	145	149	11.9999
:ddd	chr16:2153619-2153866(-)$1	247	58	62	11.9999
ffff	chr17:56572310-56572580(-)$1	270	140	144	11.9999
cc[c	chr4:187540998-187541287(-)$1	289	132	136	11.9999
CCCd	chr16:2153504-2153728(-)$1	224	19	23	11.9999
gggg	chr15:28377772-28378011(-)$1	239	194	198	11.9999
CKKJ	chr3:53851321-53851593(-)$1	272	17	21	11.9999
FFF:	chr16:87367454-87367715(-)$1	261	26	30	11.9999
pppp	chr6:151247155-151247380(+)$1	225	41	45	11.9999
d22c	chr6:34856977-34857326(+)$1	349	97	101	11.9999
ddrr	chr16:58616861-58617082(-)$1	221	53	57	11.9999
dddd	chr2:74273782-74274021(+)$1	239	90	94	11.9999
EEEE	chr17:56573360-56573617(-)$1	257	153	157	11.9999
dddn	chr19:57802420-57802719(+)$1	299	83	87	11.9999
ZIII	chr8:100479611-100479869(+)$1	258	247	251	11.9999
DDD:	chr1:22222320-22222560(-)$1	240	24	28	11.9999
IIII	chr12:120576026-120576230(-)$1	204	138	142	11.9999
eddd	chr4:155511742-155511986(-)$1	244	126	130	11.9999
a]bb	chr16:2814224-2814487(+)$1	263	165	169	11.9999
:GGG	chr1:19483273-19483516(-)$1	243	59	63	11.9999
fffm	chr17:3513778-3514054(-)$1	276	20	24	11.9999
ffff	chr5:14358186-14358448(+)$1	262	61	65	11.9999
nnnn	chr9:96051696-96051997(+)$1	301	112	116	11.9999
dd!!	chr6:90504196-90504471(-)$1	275	24	28	11.9999
666a	chr22:23523027-23523352(+)$1	325	269	273	11.9999
cc::	chr1:19446009-19446268(-)$1	259	78	82	11.9999
nnne	chr16:18853513-18853769(-)$1	256	117	121	11.9999
d]cc	chr20:61597975-61598184(+)$1	209	130	134	11.9999
gggg	chr17:3513286-3513532(-)$1	246	35	39	11.9999
GGGG	chr7:98554026-98554238(+)$1	212	20	24	11.9999
oooh	chr7:103629483-103629724(-)$1	241	193	197	11.9999
bb[e	chr10:103899348-103899572(+)$1	224	0	4	11.9999
dqqq	chr1:110884324-110884606(+)$1	282	3	7	11.9999
::::	chr3:183889247-183889518(+)$1	271	23	27	11.9999
mmmd	chr1:234599547-234599780(-)$1	233	104	108	11.9999
feee	chr6:160453601-160453827(+)$1	226	133	137	11.9999
::FF	chr9:117068699-117068904(+)$1	205	9	13	11.9999
dddd	chr6:144808583-144808791(+)$1	208	96	100	11.9999
DDDD	chrX:70787469-70787686(+)$1	217	35	39	11.9999

#DB
))))	chr5:14297182-14297472(+)$1	1	174	178	11.9999
))))	chr20:33622826-33623068(-)$1	1	38	42	11.9999
....	chr10:93753435-93753681(+)$1	1	17	21	11.9999
((((	chr2:227663319-227663584(-)$1	1	25	29	11.9999
....	chr3:52525789-52526010(+)$1	1	43	47	11.9999
((((	chr9:117054286-117054546(+)$1	1	20	24	11.9999
((..	chr12:57556164-57556395(+)$1	1	123	127	11.9999
((.(	chr19:47422453-47422731(+)$1	1	6	10	11.9999
)...	chr6:90503545-90503767(-)$1	1	109	113	11.9999
((((	chr12:112694128-112694382(-)$1	1	82	86	11.9999
(..(	chr14:55169085-55169399(+)$1	1	198	202	11.9999
)..)	chr9:134351615-134351860(+)$1	1	97	101	11.9999
((((	chrX:18928889-18929129(-)$1	1	47	51	11.9999
((((	chr3:184107101-184107385(+)$1	1	49	53	11.9999
.)))	chr8:25101101-25101373(+)$1	1	37	41	11.9999
))..	chr16:2821002-2821275(+)$1	1	142	146	11.9999
.((.	chr15:91462931-91463242(+)$1	1	186	190	11.9999
))).	chr11:57075939-57076192(-)$1	1	42	46	11.9999
))))	chr12:71977751-71978024(+)$1	1	197	201	11.9999
((..	chr11:71725864-71726133(-)$1	1	44	48	11.9999
((.(	chr21:47610272-47610528(-)$1	1	20	24	11.9999
.)))	chr6:159053288-159053517(+)$1	1	123	127	11.9999
((((	chr1:19486506-19486715(-)$1	1	11	15	11.9999
))))	chr11:71723854-71724112(-)$1	1	141	145	11.9999
...(	chr1:19484291-19484550(-)$1	1	55	59	11.9999
((((	chr15:65158152-65158432(+)$1	1	112	116	11.9999
)))(	chr22:41513277-41513522(+)$1	1	116	120	11.9999
.(((	chrX:54949290-54949541(+)$1	1	2	6	11.9999
((((	chr9:116929963-116930204(+)$1	1	18	22	11.9999
))))	chr1:19500815-19501033(-)$1	1	172	176	11.9999
(.((	chr9:6849407-6849674(+)$1	1	95	99	11.9999
((..	chr19:10490190-10490428(-)$1	1	59	63	11.9999
((..	chr1:19477081-19477326(-)$1	1	56	60	11.9999
(...	chrX:70782929-70783192(+)$1	1	146	150	11.9999
((((	chr11:85375793-85376021(-)$1	1	3	7	11.9999
))))	chr9:117044636-117044853(+)$1	1	169	173	11.9999
..))	chr9:135203007-135203272(-)$1	1	187	191	11.9999
.)))	chr1:214170605-214170858(+)$1	1	25	29	11.9999
((((	chr9:71835697-71835949(+)$1	1	21	25	11.9999
...)	chr1:171506391-171506679(+)$1	1	44	48	11.9999
(((.	chr9:116968446-116968660(+)$1	1	22	26	11.9999
))).	chr2:74669289-74669613(-)$1	1	202	206	11.9999
))))	chr17:7366181-7366434(-)$1	1	116	120	11.9999
)).)	chr7:99636534-99636775(+)$1	1	51	55	11.9999
))))	chr2:11772131-11772340(+)$1	1	81	85	11.9999
))))	chr22:21150340-21150616(-)$1	1	145	149	11.9999
.(((	chr16:2153619-2153866(-)$1	1	58	62	11.9999
((((	chr17:56572310-56572580(-)$1	1	140	144	11.9999
((.(	chr4:187540998-187541287(-)$1	1	132	136	11.9999
((((	chr16:2153504-2153728(-)$1	1	19	23	11.9999
))))	chr15:28377772-28378011(-)$1	1	194	198	11.9999
(..(	chr3:53851321-53851593(-)$1	1	17	21	11.9999
(((.	chr16:87367454-87367715(-)$1	1	26	30	11.9999
....	chr6:151247155-151247380(+)$1	1	41	45	11.9999
)..)	chr6:34856977-34857326(+)$1	1	97	101	11.9999
((..	chr16:58616861-58617082(-)$1	1	53	57	11.9999
))))	chr2:74273782-74274021(+)$1	1	90	94	11.9999
))))	chr17:56573360-56573617(-)$1	1	153	157	11.9999
(((.	chr19:57802420-57802719(+)$1	1	83	87	11.9999
.)))	chr8:100479611-100479869(+)$1	1	247	251	11.9999
(((.	chr1:22222320-22222560(-)$1	1	24	28	11.9999
))))	chr12:120576026-120576230(-)$1	1	138	142	11.9999
))))	chr4:155511742-155511986(-)$1	1	126	130	11.9999
).))	chr16:2814224-2814487(+)$1	1	165	169	11.9999
.(((	chr1:19483273-19483516(-)$1	1	59	63	11.9999
(((.	chr17:3513778-3514054(-)$1	1	20	24	11.9999
))))	chr5:14358186-14358448(+)$1	1	61	65	11.9999
....	chr9:96051696-96051997(+)$1	1	112	116	11.9999
((..	chr6:90504196-90504471(-)$1	1	24	28	11.9999
...)	chr22:23523027-23523352(+)$1	1	269	273	11.9999
))..	chr1:19446009-19446268(-)$1	1	78	82	11.9999
...)	chr16:18853513-18853769(-)$1	1	117	121	11.9999
).))	chr20:61597975-61598184(+)$1	1	130	134	11.9999
((((	chr17:3513286-3513532(-)$1	1	35	39	11.9999
((((	chr7:98554026-98554238(+)$1	1	20	24	11.9999
...)	chr7:103629483-103629724(-)$1	1	193	197	11.9999
((.(	chr10:103899348-103899572(+)$1	1	0	4	11.9999
(...	chr1:110884324-110884606(+)$1	1	3	7	11.9999
....	chr3:183889247-183889518(+)$1	1	23	27	11.9999
...)	chr1:234599547-234599780(-)$1	1	104	108	11.9999
))))	chr6:160453601-160453827(+)$1	1	133	137	11.9999
..((	chr9:117068699-117068904(+)$1	1	9	13	11.9999
((((	chr6:144808583-144808791(+)$1	1	96	100	11.9999
((((	chrX:70787469-70787686(+)$1	1	35	39	11.9999

#PSSM
C : 0.94	c : 0.05	
C : 0.94	c : 0.05	
A : 0.94	a : 0.05	
G : 0.94	g : 0.05	

#score	1007.9999999999998
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF854NXI_HNRNPU_transcript_m1_run1.nuc.txt

#NT
GAGCAGGG	chr6:3349225-3349537(-)$1	312	126	134	15.3934
GAGGGGGG	chr16:50602257-50602491(+)$1	234	217	225	15.2295
guggaggg	chr20:47548629-47548873(+)$1	244	57	65	16.6229
guggaggg	chr17:1465385-1465655(-)$1	270	30	38	16.6229
gcggaggg	chr1:23750195-23750470(-)$1	275	91	99	16.2131
GAGGACGG	chr17:79915457-79915706(-)$1	249	60	68	15.1475
GAGGAGGG	chr2:235867007-235867274(+)$1	267	98	106	19.7377
GAGGAGGG	chr11:120089746-120090019(+)$1	273	21	29	19.7377
gaggagag	chr2:134892071-134892329(+)$1	258	225	233	15.7213
GAGAAGGG	chr6:47273430-47273681(-)$1	251	128	136	15.3114
GAUGAggg	chr11:2699775-2700024(-)$1	249	183	191	15.3934
gaggagga	chr9:38058539-38058827(-)$1	288	109	117	15.7213
guggaggg	chr9:116971066-116971394(+)$1	328	111	119	16.6229
gaggcggg	chr17:1465455-1465709(-)$1	254	46	54	15.1475
GAUGAGGG	chr10:77472109-77472368(+)$1	259	226	234	15.3934
gaggaggg	chr2:101477930-101478218(+)$1	288	17	25	19.7377
gaagaggg	chr16:50646829-50647112(+)$1	283	5	13	15.3114
ggggaggg	chr19:35538910-35539171(+)$1	261	124	132	16.9508
GGGGAGGG	chr6:2217245-2217584(-)$1	339	111	119	16.9508
GAGGAGGA	chr17:36748179-36748438(-)$1	259	118	126	15.7213
GAGGAGAG	chr16:50589010-50589251(+)$1	241	21	29	15.7213
gaggagug	chr14:55099792-55100122(+)$1	330	84	92	15.6393
gagcaggg	chr11:120091518-120091778(+)$1	260	13	21	15.3934
GAGGAUGG	chr7:73024407-73024673(-)$1	266	116	124	15.1475
GAGGAGGG	chr17:70571886-70572144(-)$1	258	245	253	19.7377
GAGGAGGG	chr16:50587282-50587597(+)$1	315	110	118	19.7377
guggaggg	chr16:50646607-50646836(+)$1	229	22	30	16.6229
GAGGAGGA	chr16:50652718-50652990(+)$1	272	165	173	15.7213
GAGGAAGG	chr6:41543065-41543324(+)$1	259	228	236	15.2295
GAGGAGGG	chr1:46767129-46767386(-)$1	257	48	56	19.7377
guggaggg	chr20:47547037-47547302(+)$1	265	120	128	16.6229
ggggaggg	chr19:8303169-8303499(+)$1	330	20	28	16.9508
GAGGAGGU	chr11:2713100-2713371(-)$1	271	44	52	15.6393
GAGGAGGA	chr20:30265884-30266141(-)$1	257	109	117	15.7213
GAGGAGGU	chr17:70546559-70546828(-)$1	269	97	105	15.6393
gagggggg	chr16:46953171-46953429(+)$1	258	41	49	15.2295
GGGGAGGG	chr2:236500702-236500983(+)$1	281	96	104	16.9508
ggggaggg	chr21:47565488-47565737(-)$1	249	16	24	16.9508
GAGGAGGC	chr2:231906634-231906913(+)$1	279	148	156	15.4754
gaugaggg	chr22:31657761-31658088(+)$1	327	114	122	15.3934
gaggagug	chr6:119651292-119651560(-)$1	268	84	92	15.6393
GGGGAGGG	chr1:46767353-46767640(-)$1	287	130	138	16.9508
GAGGUGGG	chr16:89783787-89784068(-)$1	281	96	104	15.1475
GAGAAGGG	chr5:95295903-95296167(-)$1	264	59	67	15.3114
GAGGAGUG	chr20:36007326-36007601(+)$1	275	265	273	15.6393
GAGGAGGU	chr11:2713171-2713433(-)$1	262	106	114	15.6393
GGGGAGGG	chr17:55566610-55566936(+)$1	326	76	84	16.9508
GAAGAGGG	chr7:139372664-139372940(-)$1	276	27	35	15.3114
gaggaggg	chr17:70539199-70539439(-)$1	240	48	56	19.7377
GAGGAGGG	chr3:49045342-49045634(+)$1	292	173	181	19.7377
GAGGAGCG	chr2:129063589-129063838(-)$1	249	53	61	15.4754
gaggagag	chr11:2716282-2716526(-)$1	244	9	17	15.7213
GAGCAGGG	chr20:60623526-60623795(-)$1	269	250	258	15.3934
gaggaggg	chr6:86352546-86352826(-)$1	280	35	43	19.7377
caggaggg	chr20:47903832-47904102(+)$1	270	6	14	14.9016
GGGGAGGG	chr7:23567998-23568321(-)$1	323	108	116	16.9508
GUGGAGGG	chr20:44990448-44990718(-)$1	270	109	117	16.6229
GGGGAGGG	chrX:133082416-133082696(-)$1	280	231	239	16.9508
GAGGAAGG	chr2:102349664-102349918(+)$1	254	29	37	15.2295
GAGGAGAG	chr11:120083357-120083613(+)$1	256	0	8	15.7213

#otherMatches

#Struct PSSM
EEE~~~~E	chr19:39138491-39138814(+)$1	323	107	115	16.9508
:::::ccc	chr6:3349225-3349537(-)$1	312	126	134	15.3934
JZZZJJJJ	chr16:50602257-50602491(+)$1	234	217	225	15.2295
DDD{DDDD	chr20:47548629-47548873(+)$1	244	57	65	16.6229
II{GGGGG	chr17:1465385-1465655(-)$1	270	30	38	16.6229
IBBKKGGG	chr1:23750195-23750470(-)$1	275	91	99	16.2131
::iiiiii	chr17:79915457-79915706(-)$1	249	60	68	15.1475
::::====	chr2:235867007-235867274(+)$1	267	98	106	19.7377
CCCKKDDD	chr11:120089746-120090019(+)$1	273	21	29	19.7377
HHHHHHHH	chr2:134892071-134892329(+)$1	258	225	233	15.7213
a22eeeee	chr6:47273430-47273681(-)$1	251	128	136	15.3114
CCC}GGGG	chr11:2699775-2700024(-)$1	249	183	191	15.3934
ddd333hh	chr9:38058539-38058827(-)$1	288	109	117	15.7213
ffeeeeeG	chr9:116971066-116971394(+)$1	328	111	119	16.6229
d[ccclll	chr17:1465455-1465709(-)$1	254	46	54	15.1475
66eeeee]	chr10:77472109-77472368(+)$1	259	226	234	15.3934
JJJJJ{CC	chr2:101477930-101478218(+)$1	288	17	25	19.7377
:::::EEE	chr16:50646829-50647112(+)$1	283	5	13	15.3114
ccc"""cc	chr19:35538910-35539171(+)$1	261	124	132	16.9508
e!!dddd[	chr6:2217245-2217584(-)$1	339	111	119	16.9508
hhhhhhbb	chr17:36748179-36748438(-)$1	259	118	126	15.7213
EEEE::A{	chr16:50589010-50589251(+)$1	241	21	29	15.7213
5dddd]bb	chr14:55099792-55100122(+)$1	330	84	92	15.6393
:::eeeee	chr11:120091518-120091778(+)$1	260	13	21	15.3934
BB}CCC||	chr7:73024407-73024673(-)$1	266	116	124	15.1475
}GGGGGGG	chr17:70571886-70572144(-)$1	258	245	253	19.7377
e333gggg	chr16:50587282-50587597(+)$1	315	110	118	19.7377
[a[cccmm	chr16:50646607-50646836(+)$1	229	22	30	16.6229
00000000	chr16:50652718-50652990(+)$1	272	165	173	15.7213
EEDDDDAE	chr6:41543065-41543324(+)$1	259	228	236	15.2295
&&&&&&ee	chr1:46767129-46767386(-)$1	257	48	56	19.7377
[a[eeeee	chr20:47547037-47547302(+)$1	265	120	128	16.6229
DHHHHHHH	chr19:8303169-8303499(+)$1	330	20	28	16.9508
%%%%%%ff	chr11:2713100-2713371(-)$1	271	44	52	15.6393
GGGGeeee	chr20:30265884-30266141(-)$1	257	109	117	15.7213
mmmmbb]g	chr17:70546559-70546828(-)$1	269	97	105	15.6393
hh!!a&&&	chr16:46953171-46953429(+)$1	258	41	49	15.2295
eeee[eee	chr2:236500702-236500983(+)$1	281	96	104	16.9508
DDCCC:a[	chr21:47565488-47565737(-)$1	249	16	24	16.9508
JJJ:hhhh	chr2:231906634-231906913(+)$1	279	148	156	15.4754
tttttttt	chr22:31657761-31658088(+)$1	327	114	122	15.3934
a22bb]a]	chr6:119651292-119651560(-)$1	268	84	92	15.6393
DDDDDD::	chr1:46767353-46767640(-)$1	287	130	138	16.9508
hhhdddd[	chr16:89783787-89784068(-)$1	281	96	104	15.1475
FFFKKCCC	chr5:95295903-95296167(-)$1	264	59	67	15.3114
CCYYFFFF	chr20:36007326-36007601(+)$1	275	265	273	15.6393
c]ffffff	chr11:2713171-2713433(-)$1	262	106	114	15.6393
GG::::::	chr17:55566610-55566936(+)$1	326	76	84	16.9508
G:::::::	chr7:139372664-139372940(-)$1	276	27	35	15.3114
qqa22bb]	chr17:70539199-70539439(-)$1	240	48	56	19.7377
b[gggggg	chr3:49045342-49045634(+)$1	292	173	181	19.7377
!!a!!bbm	chr2:129063589-129063838(-)$1	249	53	61	15.4754
{GGGGGGG	chr11:2716282-2716526(-)$1	244	9	17	15.7213
:::DDDD}	chr20:60623526-60623795(-)$1	269	250	258	15.3934
AKKA:::b	chr6:86352546-86352826(-)$1	280	35	43	19.7377
::hhhhhh	chr20:47903832-47904102(+)$1	270	6	14	14.9016
ddoooooo	chr7:23567998-23568321(-)$1	323	108	116	16.9508
[aqqqqqq	chr20:44990448-44990718(-)$1	270	109	117	16.6229
========	chrX:133082416-133082696(-)$1	280	231	239	16.9508
oooooocc	chr2:102349664-102349918(+)$1	254	29	37	15.2295
:BBLLLDD	chr11:120083357-120083613(+)$1	256	0	8	15.7213

#DB
)))....)	chr19:39138491-39138814(+)$1	1	107	115	16.9508
.....(((	chr6:3349225-3349537(-)$1	1	126	134	15.3934
)...))))	chr16:50602257-50602491(+)$1	1	217	225	15.2295
(((.((((	chr20:47548629-47548873(+)$1	1	57	65	16.6229
((.(((((	chr17:1465385-1465655(-)$1	1	30	38	16.6229
(((..(((	chr1:23750195-23750470(-)$1	1	91	99	16.2131
..((((((	chr17:79915457-79915706(-)$1	1	60	68	15.1475
....((((	chr2:235867007-235867274(+)$1	1	98	106	19.7377
(((..(((	chr11:120089746-120090019(+)$1	1	21	29	19.7377
))))))))	chr2:134892071-134892329(+)$1	1	225	233	15.7213
)..)))))	chr6:47273430-47273681(-)$1	1	128	136	15.3114
))).))))	chr11:2699775-2700024(-)$1	1	183	191	15.3934
)))...))	chr9:38058539-38058827(-)$1	1	109	117	15.7213
)))))))(	chr9:116971066-116971394(+)$1	1	111	119	16.6229
(.(((...	chr17:1465455-1465709(-)$1	1	46	54	15.1475
..))))).	chr10:77472109-77472368(+)$1	1	226	234	15.3934
(((((.((	chr2:101477930-101478218(+)$1	1	17	25	19.7377
.....(((	chr16:50646829-50647112(+)$1	1	5	13	15.3114
(((...((	chr19:35538910-35539171(+)$1	1	124	132	16.9508
(..((((.	chr6:2217245-2217584(-)$1	1	111	119	16.9508
))))))((	chr17:36748179-36748438(-)$1	1	118	126	15.7213
((((..(.	chr16:50589010-50589251(+)$1	1	21	29	15.7213
.)))).))	chr14:55099792-55100122(+)$1	1	84	92	15.6393
...(((((	chr11:120091518-120091778(+)$1	1	13	21	15.3934
)).)))..	chr7:73024407-73024673(-)$1	1	116	124	15.1475
.)))))))	chr17:70571886-70572144(-)$1	1	245	253	19.7377
)...))))	chr16:50587282-50587597(+)$1	1	110	118	19.7377
.(.(((..	chr16:50646607-50646836(+)$1	1	22	30	16.6229
........	chr16:50652718-50652990(+)$1	1	165	173	15.7213
))))))))	chr6:41543065-41543324(+)$1	1	228	236	15.2295
......((	chr1:46767129-46767386(-)$1	1	48	56	19.7377
.(.(((((	chr20:47547037-47547302(+)$1	1	120	128	16.6229
((((((((	chr19:8303169-8303499(+)$1	1	20	28	16.9508
......((	chr11:2713100-2713371(-)$1	1	44	52	15.6393
))))((((	chr20:30265884-30266141(-)$1	1	109	117	15.7213
....)).)	chr17:70546559-70546828(-)$1	1	97	105	15.6393
((..(...	chr16:46953171-46953429(+)$1	1	41	49	15.2295
((((.(((	chr2:236500702-236500983(+)$1	1	96	104	16.9508
(((((.(.	chr21:47565488-47565737(-)$1	1	16	24	16.9508
(((.((((	chr2:231906634-231906913(+)$1	1	148	156	15.4754
........	chr22:31657761-31658088(+)$1	1	114	122	15.3934
)..)).).	chr6:119651292-119651560(-)$1	1	84	92	15.6393
((((((..	chr1:46767353-46767640(-)$1	1	130	138	16.9508
)))((((.	chr16:89783787-89784068(-)$1	1	96	104	15.1475
(((..(((	chr5:95295903-95296167(-)$1	1	59	67	15.3114
))..))))	chr20:36007326-36007601(+)$1	1	265	273	15.6393
).))))))	chr11:2713171-2713433(-)$1	1	106	114	15.6393
((......	chr17:55566610-55566936(+)$1	1	76	84	16.9508
(.......	chr7:139372664-139372940(-)$1	1	27	35	15.3114
..)..)).	chr17:70539199-70539439(-)$1	1	48	56	19.7377
(.((((((	chr3:49045342-49045634(+)$1	1	173	181	19.7377
..(..((.	chr2:129063589-129063838(-)$1	1	53	61	15.4754
.(((((((	chr11:2716282-2716526(-)$1	1	9	17	15.7213
...)))).	chr20:60623526-60623795(-)$1	1	250	258	15.3934
(..(...(	chr6:86352546-86352826(-)$1	1	35	43	19.7377
..((((((	chr20:47903832-47904102(+)$1	1	6	14	14.9016
((......	chr7:23567998-23568321(-)$1	1	108	116	16.9508
.(......	chr20:44990448-44990718(-)$1	1	109	117	16.6229
((((((((	chrX:133082416-133082696(-)$1	1	231	239	16.9508
......))	chr2:102349664-102349918(+)$1	1	29	37	15.2295
.((...((	chr11:120083357-120083613(+)$1	1	0	8	15.7213

#PSSM
G : 0.62	g : 0.36	c : 0.01	
A : 0.49	a : 0.22	G : 0.11	u : 0.08	g : 0.04	c : 0.01	U : 0.01	
G : 0.57	g : 0.34	U : 0.03	a : 0.01	u : 0.01	A : 0.01	
G : 0.55	g : 0.36	C : 0.03	A : 0.03	c : 0.01	
A : 0.59	a : 0.34	G : 0.01	c : 0.01	g : 0.01	U : 0.01	
G : 0.54	g : 0.39	A : 0.03	C : 0.01	U : 0.01	
G : 0.54	g : 0.32	a : 0.03	A : 0.03	u : 0.03	U : 0.01	C : 0.01	
G : 0.49	g : 0.37	A : 0.04	U : 0.04	a : 0.01	C : 0.01	

#score	1003.6721311475424
#seq	61
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_transcript_m3_run2.nuc.txt

#NT
GCUGUAUUAUUCCUUUAUCUCUGGUGAGAAUGAACACCUUACUUGACAUCUUUACCCCUGAGUCUCUGCCCAGCAGGGCCCAUGUUCCUAUCCCUGUGUAUCCAACCCCUUUGGUCUCUGUGAGUGUUUAAUGGGGUGGUGGCAGUAUUGGGCUUUCUGUGGUGGCUCCAUCUCCACCCAGGUGUUGCUGAUUGAAAUAGCUCGAAAAUUACUUUGACCCUCCUGCUGGCAGACCCACCUCCACCCUUCAACUUCUCCUCUCCCACCACCCCAAGAGUCCCAGAUGCCCU	chr7:100067591-100067892(-)$1	301	8	298	372.5000

#otherMatches

#Struct PSSM
CC:::::::::==========rrrrrrrrr==========::===========bb[ammmma]bb]===========ddddnnnnndddd:::CCC}DDDD:::iiiiiiiii''''''''ddddmmmmdddd4444iiiiiiiii:::DDDD{A{EEEEELLLHHHHHHHH{CCC{DDDD{CCC{CCCMMMMBB{AA{FFFFFFLLLEEEEE{A{CCC{DDDD::dddd[ddddmmmmdddddddd:::hhhhhhhhrrrrrrrrrhhhhhhhh::DDDD}CCC}A}EE	chr19:2179900-2180270(+)$1	370	16	306	372.5000
:::::::::::::::::::EEEEE:EEEEEDDDD::::::::::ccc[bbrrrrrrrrrbbcccFFFFFF{FFFFFFeeeee+++++++++++dddd####ccc[dddd[dddd[ccclllccc333dddd]ddddccc22dddd333eeeee::dddd[eeeeeqqqqqqqqeeeeedddd::::ddddpppppppddddeeeeeooooooeeeee::::FFFFFFFFFFFF@@@@@@@@@@@@@DDDDYYEEEEEdddduuuuuuuuuuuudddd::EEEEE::::::	chr7:100067591-100067892(-)$1	301	8	298	372.5000

#DB
((.........((((((((((.........))))))))))..(((((((((((((.(....).)).)))))))))))((((.....))))...))).))))...(((((((((........((((....))))....)))))))))...((((.(.(((((...((((((((.(((.((((.(((.(((....((.((.((((((...(((((.(.(((.((((..((((.((((....))))))))...((((((((.........))))))))..)))).))).).))	chr19:2179900-2180270(+)$1	1	16	306	372.5000
...................(((((.(((((((((..........(((.((.........)))))((((((.(((((((((((...........((((....(((.((((.((((.(((...)))...)))).)))))))..))))...)))))..((((.(((((........)))))))))....((((.......))))(((((......)))))....)))))))))))).............))))..)))))((((............))))..)))))......	chr7:100067591-100067892(-)$1	1	8	298	372.5000

#PSSM
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
g : 0.50	A : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
u : 0.50	A : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	C : 0.50	
u : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
u : 0.50	U : 0.50	
u : 0.50	C : 0.50	
u : 0.50	A : 0.50	
u : 0.50	A : 0.50	
u : 0.50	C : 0.50	
u : 0.50	U : 0.50	
u : 0.50	U : 0.50	
c : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	C : 0.50	
a : 0.50	C : 0.50	
u : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
u : 0.50	C : 0.50	
a : 0.50	C : 0.50	
c : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	C : 0.50	
u : 0.50	C : 0.50	
u : 0.50	A : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
a : 0.50	A : 0.50	
a : 0.50	A : 0.50	
a : 0.50	G : 0.50	
c : 0.50	A : 0.50	
a : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
c : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	

#score	745.0
#seq	2
#width	290
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_transcript_m2_run1.nuc.txt

#NT
UGU	chr10:105154020-105154252(-)$1	232	116	119	9.0000
ugu	chr22:33156168-33156426(-)$1	258	1	4	9.0000
UGU	chr9:4850507-4850764(+)$1	257	57	60	9.0000
UGU	chr2:242752735-242753010(+)$1	275	80	83	9.0000
UGU	chr13:92003793-92004017(+)$1	224	17	20	9.0000
UGU	chr7:158330870-158331140(-)$1	270	120	123	9.0000
UGU	chr4:1309587-1309892(+)$1	305	3	6	9.0000
UGU	chr18:55989761-55990022(+)$1	261	3	6	9.0000
UGU	chr9:96941295-96941539(+)$1	244	19	22	9.0000
UGU	chr4:1805013-1805339(+)$1	326	40	43	9.0000
UGU	chr7:100173168-100173421(-)$1	253	48	51	9.0000
ugu	chr20:31150174-31150469(-)$1	295	161	164	9.0000
ugu	chr19:893460-893690(+)$1	230	172	175	9.0000
UGU	chr2:264328-264678(-)$1	350	47	50	9.0000
UGU	chr16:85677205-85677472(+)$1	267	54	57	9.0000
UGU	chr2:132268144-132268438(+)$1	294	1	4	9.0000
UGU	chr9:96941534-96941886(+)$1	352	33	36	9.0000
UGU	chr2:240287064-240287321(-)$1	257	24	27	9.0000
UGU	chr6:42750026-42750289(+)$1	263	35	38	9.0000
UGU	chr12:133138841-133139146(+)$1	305	28	31	9.0000
UGU	chr9:97846841-97847097(+)$1	256	4	7	9.0000
ugu	chr17:794861-795122(-)$1	261	21	24	9.0000
UGU	chr22:47002453-47002770(+)$1	317	59	62	9.0000
UGU	chr20:3898921-3899167(+)$1	246	25	28	9.0000
UGU	chr3:160123608-160123848(+)$1	240	30	33	9.0000
UGU	chr1:2122081-2122392(-)$1	311	113	116	9.0000
UGU	chr19:13946792-13947088(-)$1	296	72	75	9.0000
UGU	chr12:133126944-133127226(+)$1	282	90	93	9.0000
UGU	chr19:2271147-2271470(+)$1	323	42	45	9.0000
UGU	chr19:2200176-2200445(+)$1	269	12	15	9.0000
UGU	chr17:46114592-46114892(-)$1	300	41	44	9.0000
ugu	chr12:58219404-58219683(-)$1	279	42	45	9.0000
UGU	chr2:132266399-132266661(+)$1	262	31	34	9.0000
UGU	chr18:55990355-55990566(+)$1	211	20	23	9.0000
UGU	chr22:47520155-47520422(+)$1	267	3	6	9.0000
UGU	chr21:46855134-46855425(+)$1	291	154	157	9.0000
UGU	chr17:28444403-28444642(+)$1	239	25	28	9.0000
UGU	chr8:141742661-141742989(-)$1	328	50	53	9.0000
ugu	chrX:53582035-53582322(-)$1	287	10	13	9.0000
UGU	chr9:116969103-116969344(+)$1	241	11	14	9.0000
UGU	chr14:105854492-105854755(+)$1	263	9	12	9.0000
UGU	chr3:49050612-49050868(+)$1	256	33	36	9.0000
UGU	chr9:97846995-97847237(+)$1	242	25	28	9.0000
UGU	chr19:1104347-1104641(+)$1	294	18	21	9.0000
ugu	chr7:158344223-158344445(-)$1	222	43	46	9.0000
UGU	chr3:65577768-65578079(-)$1	311	65	68	9.0000
UGU	chr17:6607354-6607644(-)$1	290	46	49	9.0000
UGU	chr8:144815522-144815884(-)$1	362	220	223	9.0000
UGU	chr13:99055854-99056118(+)$1	264	13	16	9.0000
UGU	chr13:92004286-92004529(+)$1	243	28	31	9.0000
UGU	chr6:170123971-170124246(-)$1	275	250	253	9.0000
UGU	chr22:42297059-42297332(+)$1	273	43	46	9.0000
UGU	chr3:52301166-52301436(-)$1	270	39	42	9.0000
UGU	chr5:167987518-167987848(-)$1	330	13	16	9.0000
UGU	chr21:47563054-47563340(-)$1	286	150	153	9.0000
UGU	chr19:13946494-13946739(-)$1	245	139	142	9.0000
UGU	chr12:62997501-62997760(+)$1	259	14	17	9.0000
UGU	chr16:87738792-87739095(-)$1	303	73	76	9.0000
ugu	chr14:105240300-105240602(-)$1	302	10	13	9.0000
UGU	chr16:14396384-14396688(+)$1	304	101	104	9.0000
ugu	chr1:227955396-227955631(+)$1	235	11	14	9.0000
UGU	chr2:130919263-130919511(-)$1	248	42	45	9.0000
UGU	chr4:83294795-83295071(-)$1	276	34	37	9.0000
UGU	chr3:48016986-48017327(-)$1	341	67	70	9.0000
UGU	chr16:50612317-50612534(+)$1	217	29	32	9.0000
UGU	chr20:61913140-61913347(+)$1	207	78	81	9.0000
ugu	chr10:724444-724680(-)$1	236	16	19	9.0000
UGU	chr3:9438749-9439064(-)$1	315	75	78	9.0000
UGU	chr3:38011440-38011714(+)$1	274	64	67	9.0000
UGU	chr7:1062037-1062309(-)$1	272	27	30	9.0000
UGU	chr13:92004144-92004366(+)$1	222	14	17	9.0000
UGU	chr18:76905098-76905343(+)$1	245	20	23	9.0000
ugu	chr1:227955289-227955531(+)$1	242	2	5	9.0000
UGU	chr3:48468839-48469117(-)$1	278	2	5	9.0000
ugu	chr18:20799080-20799321(+)$1	241	36	39	9.0000
UGU	chr6:111135739-111135996(-)$1	257	95	98	9.0000
UGU	chr21:44494905-44495191(-)$1	286	145	148	9.0000
UGU	chr13:113716099-113716392(+)$1	293	190	193	9.0000
UGU	chr16:68387736-68388026(+)$1	290	153	156	9.0000
UGU	chr12:62996868-62997164(+)$1	296	224	227	9.0000
UGU	chr13:113764531-113764804(+)$1	273	76	79	9.0000
UGU	chr1:41219815-41220177(+)$1	362	58	61	9.0000
UGU	chr13:113380638-113380945(+)$1	307	42	45	9.0000
UGU	chr16:14397981-14398248(+)$1	267	97	100	9.0000
UGU	chr2:219266397-219266629(+)$1	232	10	13	9.0000
UGU	chr18:20798515-20798871(+)$1	356	156	159	9.0000
UGU	chr1:41223388-41223632(+)$1	244	18	21	9.0000
UGU	chr1:974548-974808(+)$1	260	187	190	9.0000
UGU	chr4:719457-719676(+)$1	219	12	15	9.0000
UGU	chr4:1799488-1799731(+)$1	243	40	43	9.0000
UGU	chr7:25988693-25988932(-)$1	239	26	29	9.0000
UGU	chr2:3352123-3352367(-)$1	244	10	13	9.0000
UGU	chr9:136652742-136653055(-)$1	313	9	12	9.0000
UGU	chr11:990410-990665(+)$1	255	34	37	9.0000
ugu	chr21:45926989-45927280(+)$1	291	25	28	9.0000
UGU	chr16:89555645-89555911(-)$1	266	63	66	9.0000
UGU	chr21:45735899-45736197(+)$1	298	10	13	9.0000

#otherMatches

#Struct PSSM
qqi	chr16:14397048-14397322(+)$1	274	15	18	9.0000
eee	chr10:105154020-105154252(-)$1	232	116	119	9.0000
:dd	chr22:33156168-33156426(-)$1	258	1	4	9.0000
ggg	chr9:4850507-4850764(+)$1	257	57	60	9.0000
===	chr2:242752735-242753010(+)$1	275	80	83	9.0000
CC:	chr13:92003793-92004017(+)$1	224	17	20	9.0000
:::	chr7:158330870-158331140(-)$1	270	120	123	9.0000
===	chr4:1309587-1309892(+)$1	305	3	6	9.0000
[gg	chr18:55989761-55990022(+)$1	261	3	6	9.0000
nnn	chr9:96941295-96941539(+)$1	244	19	22	9.0000
GGG	chr4:1805013-1805339(+)$1	326	40	43	9.0000
aoo	chr7:100173168-100173421(-)$1	253	48	51	9.0000
##c	chr20:31150174-31150469(-)$1	295	161	164	9.0000
:ee	chr19:893460-893690(+)$1	230	172	175	9.0000
DDD	chr2:264328-264678(-)$1	350	47	50	9.0000
hhh	chr16:85677205-85677472(+)$1	267	54	57	9.0000
::G	chr2:132268144-132268438(+)$1	294	1	4	9.0000
mbb	chr9:96941534-96941886(+)$1	352	33	36	9.0000
EEE	chr2:240287064-240287321(-)$1	257	24	27	9.0000
e""	chr6:42750026-42750289(+)$1	263	35	38	9.0000
bb[	chr12:133138841-133139146(+)$1	305	28	31	9.0000
EEE	chr9:97846841-97847097(+)$1	256	4	7	9.0000
QQQ	chr17:794861-795122(-)$1	261	21	24	9.0000
ddd	chr22:47002453-47002770(+)$1	317	59	62	9.0000
DNN	chr20:3898921-3899167(+)$1	246	25	28	9.0000
ggg	chr3:160123608-160123848(+)$1	240	30	33	9.0000
eee	chr1:2122081-2122392(-)$1	311	113	116	9.0000
cc]	chr19:13946792-13947088(-)$1	296	72	75	9.0000
a[f	chr12:133126944-133127226(+)$1	282	90	93	9.0000
[bb	chr19:2271147-2271470(+)$1	323	42	45	9.0000
fff	chr19:2200176-2200445(+)$1	269	12	15	9.0000
ood	chr17:46114592-46114892(-)$1	300	41	44	9.0000
dbb	chr12:58219404-58219683(-)$1	279	42	45	9.0000
"""	chr2:132266399-132266661(+)$1	262	31	34	9.0000
ndd	chr18:55990355-55990566(+)$1	211	20	23	9.0000
:::	chr22:47520155-47520422(+)$1	267	3	6	9.0000
b::	chr21:46855134-46855425(+)$1	291	154	157	9.0000
CFF	chr17:28444403-28444642(+)$1	239	25	28	9.0000
eee	chr8:141742661-141742989(-)$1	328	50	53	9.0000
EEE	chrX:53582035-53582322(-)$1	287	10	13	9.0000
KKD	chr9:116969103-116969344(+)$1	241	11	14	9.0000
ppp	chr14:105854492-105854755(+)$1	263	9	12	9.0000
hh:	chr3:49050612-49050868(+)$1	256	33	36	9.0000
FFF	chr9:97846995-97847237(+)$1	242	25	28	9.0000
b]d	chr19:1104347-1104641(+)$1	294	18	21	9.0000
===	chr7:158344223-158344445(-)$1	222	43	46	9.0000
qqq	chr3:65577768-65578079(-)$1	311	65	68	9.0000
LLL	chr17:6607354-6607644(-)$1	290	46	49	9.0000
[bb	chr8:144815522-144815884(-)$1	362	220	223	9.0000
EKK	chr13:99055854-99056118(+)$1	264	13	16	9.0000
ffc	chr13:92004286-92004529(+)$1	243	28	31	9.0000
hhh	chr6:170123971-170124246(-)$1	275	250	253	9.0000
iii	chr22:42297059-42297332(+)$1	273	43	46	9.0000
ldd	chr3:52301166-52301436(-)$1	270	39	42	9.0000
MME	chr5:167987518-167987848(-)$1	330	13	16	9.0000
a]a	chr21:47563054-47563340(-)$1	286	150	153	9.0000
mmf	chr19:13946494-13946739(-)$1	245	139	142	9.0000
)))	chr12:62997501-62997760(+)$1	259	14	17	9.0000
III	chr16:87738792-87739095(-)$1	303	73	76	9.0000
ccc	chr14:105240300-105240602(-)$1	302	10	13	9.0000
e33	chr16:14396384-14396688(+)$1	304	101	104	9.0000
===	chr1:227955396-227955631(+)$1	235	11	14	9.0000
ggg	chr2:130919263-130919511(-)$1	248	42	45	9.0000
b33	chr4:83294795-83295071(-)$1	276	34	37	9.0000
fff	chr3:48016986-48017327(-)$1	341	67	70	9.0000
:::	chr16:50612317-50612534(+)$1	217	29	32	9.0000
FFF	chr20:61913140-61913347(+)$1	207	78	81	9.0000
"cc	chr10:724444-724680(-)$1	236	16	19	9.0000
eee	chr3:9438749-9439064(-)$1	315	75	78	9.0000
GGG	chr3:38011440-38011714(+)$1	274	64	67	9.0000
lee	chr7:1062037-1062309(-)$1	272	27	30	9.0000
B{I	chr13:92004144-92004366(+)$1	222	14	17	9.0000
===	chr18:76905098-76905343(+)$1	245	20	23	9.0000
{FF	chr1:227955289-227955531(+)$1	242	2	5	9.0000
EEE	chr3:48468839-48469117(-)$1	278	2	5	9.0000
#gg	chr18:20799080-20799321(+)$1	241	36	39	9.0000
c]b	chr6:111135739-111135996(-)$1	257	95	98	9.0000
555	chr21:44494905-44495191(-)$1	286	145	148	9.0000
ell	chr13:113716099-113716392(+)$1	293	190	193	9.0000
eee	chr16:68387736-68388026(+)$1	290	153	156	9.0000
cBB	chr12:62996868-62997164(+)$1	296	224	227	9.0000
cc2	chr13:113764531-113764804(+)$1	273	76	79	9.0000
GGG	chr1:41219815-41220177(+)$1	362	58	61	9.0000
hhh	chr13:113380638-113380945(+)$1	307	42	45	9.0000
dd2	chr16:14397981-14398248(+)$1	267	97	100	9.0000
JJJ	chr2:219266397-219266629(+)$1	232	10	13	9.0000
eee	chr18:20798515-20798871(+)$1	356	156	159	9.0000
ddd	chr1:41223388-41223632(+)$1	244	18	21	9.0000
iii	chr1:974548-974808(+)$1	260	187	190	9.0000
[ff	chr4:719457-719676(+)$1	219	12	15	9.0000
ccc	chr4:1799488-1799731(+)$1	243	40	43	9.0000
JJJ	chr7:25988693-25988932(-)$1	239	26	29	9.0000
:a[	chr2:3352123-3352367(-)$1	244	10	13	9.0000
III	chr9:136652742-136653055(-)$1	313	9	12	9.0000
::f	chr11:990410-990665(+)$1	255	34	37	9.0000
hhh	chr21:45926989-45927280(+)$1	291	25	28	9.0000
CCC	chr16:89555645-89555911(-)$1	266	63	66	9.0000
JKK	chr21:45735899-45736197(+)$1	298	10	13	9.0000

#DB
..)	chr16:14397048-14397322(+)$1	1	15	18	9.0000
)))	chr10:105154020-105154252(-)$1	1	116	119	9.0000
.((	chr22:33156168-33156426(-)$1	1	1	4	9.0000
)))	chr9:4850507-4850764(+)$1	1	57	60	9.0000
)))	chr2:242752735-242753010(+)$1	1	80	83	9.0000
((.	chr13:92003793-92004017(+)$1	1	17	20	9.0000
...	chr7:158330870-158331140(-)$1	1	120	123	9.0000
(((	chr4:1309587-1309892(+)$1	1	3	6	9.0000
.((	chr18:55989761-55990022(+)$1	1	3	6	9.0000
...	chr9:96941295-96941539(+)$1	1	19	22	9.0000
(((	chr4:1805013-1805339(+)$1	1	40	43	9.0000
(..	chr7:100173168-100173421(-)$1	1	48	51	9.0000
..(	chr20:31150174-31150469(-)$1	1	161	164	9.0000
.((	chr19:893460-893690(+)$1	1	172	175	9.0000
(((	chr2:264328-264678(-)$1	1	47	50	9.0000
)))	chr16:85677205-85677472(+)$1	1	54	57	9.0000
..(	chr2:132268144-132268438(+)$1	1	1	4	9.0000
.))	chr9:96941534-96941886(+)$1	1	33	36	9.0000
(((	chr2:240287064-240287321(-)$1	1	24	27	9.0000
(..	chr6:42750026-42750289(+)$1	1	35	38	9.0000
((.	chr12:133138841-133139146(+)$1	1	28	31	9.0000
(((	chr9:97846841-97847097(+)$1	1	4	7	9.0000
...	chr17:794861-795122(-)$1	1	21	24	9.0000
)))	chr22:47002453-47002770(+)$1	1	59	62	9.0000
(..	chr20:3898921-3899167(+)$1	1	25	28	9.0000
(((	chr3:160123608-160123848(+)$1	1	30	33	9.0000
)))	chr1:2122081-2122392(-)$1	1	113	116	9.0000
)).	chr19:13946792-13947088(-)$1	1	72	75	9.0000
(.(	chr12:133126944-133127226(+)$1	1	90	93	9.0000
.((	chr19:2271147-2271470(+)$1	1	42	45	9.0000
(((	chr19:2200176-2200445(+)$1	1	12	15	9.0000
..)	chr17:46114592-46114892(-)$1	1	41	44	9.0000
(((	chr12:58219404-58219683(-)$1	1	42	45	9.0000
...	chr2:132266399-132266661(+)$1	1	31	34	9.0000
.))	chr18:55990355-55990566(+)$1	1	20	23	9.0000
...	chr22:47520155-47520422(+)$1	1	3	6	9.0000
)..	chr21:46855134-46855425(+)$1	1	154	157	9.0000
(((	chr17:28444403-28444642(+)$1	1	25	28	9.0000
(((	chr8:141742661-141742989(-)$1	1	50	53	9.0000
(((	chrX:53582035-53582322(-)$1	1	10	13	9.0000
..(	chr9:116969103-116969344(+)$1	1	11	14	9.0000
...	chr14:105854492-105854755(+)$1	1	9	12	9.0000
)).	chr3:49050612-49050868(+)$1	1	33	36	9.0000
(((	chr9:97846995-97847237(+)$1	1	25	28	9.0000
).)	chr19:1104347-1104641(+)$1	1	18	21	9.0000
(((	chr7:158344223-158344445(-)$1	1	43	46	9.0000
...	chr3:65577768-65578079(-)$1	1	65	68	9.0000
...	chr17:6607354-6607644(-)$1	1	46	49	9.0000
.((	chr8:144815522-144815884(-)$1	1	220	223	9.0000
(..	chr13:99055854-99056118(+)$1	1	13	16	9.0000
(((	chr13:92004286-92004529(+)$1	1	28	31	9.0000
)))	chr6:170123971-170124246(-)$1	1	250	253	9.0000
)))	chr22:42297059-42297332(+)$1	1	43	46	9.0000
.))	chr3:52301166-52301436(-)$1	1	39	42	9.0000
..(	chr5:167987518-167987848(-)$1	1	13	16	9.0000
).)	chr21:47563054-47563340(-)$1	1	150	153	9.0000
..)	chr19:13946494-13946739(-)$1	1	139	142	9.0000
...	chr12:62997501-62997760(+)$1	1	14	17	9.0000
(((	chr16:87738792-87739095(-)$1	1	73	76	9.0000
(((	chr14:105240300-105240602(-)$1	1	10	13	9.0000
)..	chr16:14396384-14396688(+)$1	1	101	104	9.0000
(((	chr1:227955396-227955631(+)$1	1	11	14	9.0000
)))	chr2:130919263-130919511(-)$1	1	42	45	9.0000
)..	chr4:83294795-83295071(-)$1	1	34	37	9.0000
)))	chr3:48016986-48017327(-)$1	1	67	70	9.0000
...	chr16:50612317-50612534(+)$1	1	29	32	9.0000
(((	chr20:61913140-61913347(+)$1	1	78	81	9.0000
.((	chr10:724444-724680(-)$1	1	16	19	9.0000
)))	chr3:9438749-9439064(-)$1	1	75	78	9.0000
(((	chr3:38011440-38011714(+)$1	1	64	67	9.0000
.))	chr7:1062037-1062309(-)$1	1	27	30	9.0000
(.(	chr13:92004144-92004366(+)$1	1	14	17	9.0000
(((	chr18:76905098-76905343(+)$1	1	20	23	9.0000
.((	chr1:227955289-227955531(+)$1	1	2	5	9.0000
(((	chr3:48468839-48469117(-)$1	1	2	5	9.0000
.((	chr18:20799080-20799321(+)$1	1	36	39	9.0000
).)	chr6:111135739-111135996(-)$1	1	95	98	9.0000
...	chr21:44494905-44495191(-)$1	1	145	148	9.0000
(..	chr13:113716099-113716392(+)$1	1	190	193	9.0000
(((	chr16:68387736-68388026(+)$1	1	153	156	9.0000
)))	chr12:62996868-62997164(+)$1	1	224	227	9.0000
)).	chr13:113764531-113764804(+)$1	1	76	79	9.0000
(((	chr1:41219815-41220177(+)$1	1	58	61	9.0000
(((	chr13:113380638-113380945(+)$1	1	42	45	9.0000
)).	chr16:14397981-14398248(+)$1	1	97	100	9.0000
(((	chr2:219266397-219266629(+)$1	1	10	13	9.0000
(((	chr18:20798515-20798871(+)$1	1	156	159	9.0000
(((	chr1:41223388-41223632(+)$1	1	18	21	9.0000
(((	chr1:974548-974808(+)$1	1	187	190	9.0000
.((	chr4:719457-719676(+)$1	1	12	15	9.0000
(((	chr4:1799488-1799731(+)$1	1	40	43	9.0000
(((	chr7:25988693-25988932(-)$1	1	26	29	9.0000
.(.	chr2:3352123-3352367(-)$1	1	10	13	9.0000
(((	chr9:136652742-136653055(-)$1	1	9	12	9.0000
..(	chr11:990410-990665(+)$1	1	34	37	9.0000
(((	chr21:45926989-45927280(+)$1	1	25	28	9.0000
(((	chr16:89555645-89555911(-)$1	1	63	66	9.0000
(..	chr21:45735899-45736197(+)$1	1	10	13	9.0000

#PSSM
U : 0.86	u : 0.13	
G : 0.86	g : 0.13	
U : 0.86	u : 0.13	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_transcript_m2_run1.nuc.txt

#NT
GUGGGCGAGGG	chr2:97534834-97535126(-)$1	292	44	55	16.3653
GCGGCCUGGGG	chr2:20550043-20550301(-)$1	258	82	93	14.2500
gcggccgaggg	chr12:7036965-7037226(+)$1	261	163	174	20.6923
CCGGCCGAGCG	chr2:54197784-54198040(-)$1	256	125	136	14.6346
GUGGCAGUGGG	chr6:166795605-166795847(-)$1	242	47	58	13.4807
CGGGCCGCGGC	chr10:33246745-33247046(-)$1	301	6	17	14.5384
CCGCCCGAGGG	chr7:5569495-5569749(-)$1	254	159	170	14.8269
GAGGCCGAGCG	chr3:9438285-9438532(-)$1	247	122	133	15.5000
ggggcccgggg	chr13:92000572-92000888(+)$1	316	8	19	15.7884
GAGGCCGAGGU	chr10:43903933-43904184(-)$1	251	1	12	16.0769
GGGACCGAGGG	chr17:62501978-62502234(-)$1	256	31	42	17.3269
AGGGCGGAGGG	chr6:52227377-52227625(+)$1	248	139	150	16.5576
ggggccgcggg	chr11:3013145-3013465(-)$1	320	51	62	19.8269
GAGGCCGCGGC	chr1:54871251-54871488(-)$1	237	12	23	14.2500
cggcccgcggg	chr16:447244-447525(+)$1	281	22	33	13.9615
ACGGCCCAGGG	chr1:46768054-46768323(-)$1	269	146	157	14.6346
GCGGCGGAGGG	chr12:30907416-30907706(-)$1	290	53	64	17.5192
GGGGCCCAGGC	chr1:1154649-1154904(-)$1	255	118	129	14.1538
GAGGCAGAGGG	chr7:1482125-1482362(-)$1	237	26	37	16.4615
ggggucgaggg	chr21:44846348-44846606(-)$1	258	181	192	17.9038
GAGCCCGAGGG	chr2:178128930-178129165(-)$1	235	114	125	15.6923
GGGGCUGAGGC	chr11:567784-568043(-)$1	259	130	141	14.8269
AGGGCGGUGGG	chr22:21797710-21797996(+)$1	286	97	108	13.7692
ggggccgaggg	chr2:61764480-61764736(-)$1	256	59	70	21.8461
GCGGCCGAGGC	chr1:1822248-1822535(-)$1	287	227	238	16.9423
GGGGCCGCCGG	chr19:2270490-2270716(+)$1	226	13	24	15.2115
ACCGCCGAGGG	chr3:196755818-196756066(-)$1	248	110	121	13.7692
cgggcccaggg	chr21:38740046-38740297(+)$1	251	11	22	16.3653
AGGGGCGAGGG	chr17:7476292-7476523(+)$1	231	24	35	16.2692
CUGGCCGAAGG	chr4:79697703-79697963(+)$1	260	162	173	13.7692
CUGGUCGAGGG	chr19:2270097-2270395(+)$1	298	23	34	14.3461
GAGGCUGAGGG	chr17:40427825-40428093(-)$1	268	21	32	16.7500
AGGGCCGGGGU	chr19:575243-575523(+)$1	280	196	207	13.6730
ggggccggggg	chr9:101867477-101867761(+)$1	284	197	208	19.7307
AGGGGCGAGGG	chr12:109124501-109124760(-)$1	259	95	106	16.2692
CCGGCCGGGGG	chr19:1407841-1408200(+)$1	359	67	78	17.0384
gcggccggggg	chr6:86351858-86352142(-)$1	284	134	145	18.5769
AGGGCCGAGAG	chr22:20127688-20127958(+)$1	270	84	95	15.1153
CGGGGCGAGGG	chr19:18547997-18548296(-)$1	299	9	20	16.8461
gcggccccggg	chr13:27745068-27745332(-)$1	264	4	15	14.7307
GGGGCCGCAGG	chr11:118927499-118927773(-)$1	274	18	29	15.3076
GCGGCGGAGGG	chr7:5459902-5460144(-)$1	242	216	227	17.5192
GAGGCUGAGGG	chr9:140713929-140714253(+)$1	324	167	178	16.7500
cggggcgaggg	chr7:158621823-158622195(-)$1	372	98	109	16.8461
ggggcugaggg	chr6:86352565-86352819(-)$1	254	38	49	18.5769
CGGGCGGCGGG	chr3:41241218-41241473(+)$1	255	25	36	15.1153
GUGGCCGGGGG	chr19:1410902-1411133(+)$1	231	37	48	17.7115
CGGGGCGGGGG	chr22:19929457-19929755(+)$1	298	4	15	14.7307
ccggcgggggg	chr19:1652057-1652294(-)$1	237	2	13	13.8653
CGGGCCGCGGU	chr4:1873824-1874071(+)$1	247	66	77	14.3461
GGGGCCGCGGG	chr10:71929879-71930149(-)$1	270	111	122	19.8269

#otherMatches

#Struct PSSM
ee"""dddd[i	chr5:154136457-154136726(+)$1	269	19	30	13.9615
eeccc[eeeee	chr2:97534834-97535126(-)$1	292	44	55	16.3653
liiiiiiiii3	chr2:20550043-20550301(-)$1	258	82	93	14.2500
CCCcccmmmmc	chr12:7036965-7037226(+)$1	261	163	174	20.6923
ccc]ffffff:	chr2:54197784-54198040(-)$1	256	125	136	14.6346
ldddd22ffff	chr6:166795605-166795847(-)$1	242	47	58	13.4807
HHdddd[eeee	chr10:33246745-33247046(-)$1	301	6	17	14.5384
ffffbblllbb	chr7:5569495-5569749(-)$1	254	159	170	14.8269
ddddccca]bb	chr3:9438285-9438532(-)$1	247	122	133	15.5000
IIIIICCC{A{	chr13:92000572-92000888(+)$1	316	8	19	15.7884
::::BB{DDDD	chr10:43903933-43904184(-)$1	251	1	12	16.0769
{A{BB{JJJJJ	chr17:62501978-62502234(-)$1	256	31	42	17.3269
lllhhhhhhhh	chr6:52227377-52227625(+)$1	248	139	150	16.5576
oooodddd22f	chr11:3013145-3013465(-)$1	320	51	62	19.8269
==!!bb[dddd	chr1:54871251-54871488(-)$1	237	12	23	14.2500
fffffddddgg	chr16:447244-447525(+)$1	281	22	33	13.9615
2a]dddd:::c	chr1:46768054-46768323(-)$1	269	146	157	14.6346
ffccc[a####	chr12:30907416-30907706(-)$1	290	53	64	17.5192
gg=========	chr1:1154649-1154904(-)$1	255	118	129	14.1538
$$$ccc!!ccc	chr7:1482125-1482362(-)$1	237	26	37	16.4615
bb]ccc22eee	chr21:44846348-44846606(-)$1	258	181	192	17.9038
E:cccmmmmcc	chr2:178128930-178129165(-)$1	235	114	125	15.6923
b333ccc]hhh	chr11:567784-568043(-)$1	259	130	141	14.8269
GGGGGGG{DDD	chr22:21797710-21797996(+)$1	286	97	108	13.7692
[ddddbb!!ee	chr2:61764480-61764736(-)$1	256	59	70	21.8461
clllccc333f	chr1:1822248-1822535(-)$1	287	227	238	16.9423
cc[bb[fffff	chr19:2270490-2270716(+)$1	226	13	24	15.2115
2bb]ddddDDD	chr3:196755818-196756066(-)$1	248	110	121	13.7692
b[ddddllldd	chr21:38740046-38740297(+)$1	251	11	22	16.3653
ooooodddd22	chr17:7476292-7476523(+)$1	231	24	35	16.2692
ggggggccc]a	chr4:79697703-79697963(+)$1	260	162	173	13.7692
ee22ffffff:	chr19:2270097-2270395(+)$1	298	23	34	14.3461
EEKKA{CCC{F	chr17:40427825-40428093(-)$1	268	21	32	16.7500
d]ffffffbb]	chr19:575243-575523(+)$1	280	196	207	13.6730
nnnccceeeee	chr9:101867477-101867761(+)$1	284	197	208	19.7307
333ccc4444b	chr12:109124501-109124760(-)$1	259	95	106	16.2692
]dddd]hhhhh	chr19:1407841-1408200(+)$1	359	67	78	17.0384
gggggglllgg	chr6:86351858-86352142(-)$1	284	134	145	18.5769
!ccc$$$$$==	chr22:20127688-20127958(+)$1	270	84	95	15.1153
ILLLBBLLLDD	chr19:18547997-18548296(-)$1	299	9	20	16.8461
{AKKDDDD{CC	chr13:27745068-27745332(-)$1	264	4	15	14.7307
EEE:ddddmmm	chr11:118927499-118927773(-)$1	274	18	29	15.3076
i[avvvvvvvv	chr7:5459902-5460144(-)$1	242	216	227	17.5192
:::::BB{CCC	chr9:140713929-140714253(+)$1	324	167	178	16.7500
ddeeeeeffff	chr7:158621823-158622195(-)$1	372	98	109	16.8461
LLHHHHHHHH:	chr6:86352565-86352819(-)$1	254	38	49	18.5769
hhhhhh[ccc[	chr3:41241218-41241473(+)$1	255	25	36	15.1153
"""dddd[eee	chr19:1410902-1411133(+)$1	231	37	48	17.7115
:EEEEEfffff	chr22:19929457-19929755(+)$1	298	4	15	14.7307
JJJJJJJJJJ{	chr19:1652057-1652294(-)$1	237	2	13	13.8653
cffffffnnnn	chr4:1873824-1874071(+)$1	247	66	77	14.3461
mgggggggeee	chr10:71929879-71930149(-)$1	270	111	122	19.8269

#DB
((...((((.(	chr5:154136457-154136726(+)$1	1	19	30	13.9615
(((((.(((((	chr2:97534834-97535126(-)$1	1	44	55	16.3653
.))))))))).	chr2:20550043-20550301(-)$1	1	82	93	14.2500
)))(((....)	chr12:7036965-7037226(+)$1	1	163	174	20.6923
))).)))))).	chr2:54197784-54198040(-)$1	1	125	136	14.6346
.))))..))))	chr6:166795605-166795847(-)$1	1	47	58	13.4807
((((((.((((	chr10:33246745-33247046(-)$1	1	6	17	14.5384
((((((...))	chr7:5569495-5569749(-)$1	1	159	170	14.8269
)))))))).))	chr3:9438285-9438532(-)$1	1	122	133	15.5000
((((((((.(.	chr13:92000572-92000888(+)$1	1	8	19	15.7884
....((.((((	chr10:43903933-43904184(-)$1	1	1	12	16.0769
.(.((.(((((	chr17:62501978-62502234(-)$1	1	31	42	17.3269
...))))))))	chr6:52227377-52227625(+)$1	1	139	150	16.5576
....))))..)	chr11:3013145-3013465(-)$1	1	51	62	19.8269
((..((.((((	chr1:54871251-54871488(-)$1	1	12	23	14.2500
)))))((((((	chr16:447244-447525(+)$1	1	22	33	13.9615
.).))))...(	chr1:46768054-46768323(-)$1	1	146	157	14.6346
(((((.(....	chr12:30907416-30907706(-)$1	1	53	64	17.5192
))(((((((((	chr1:1154649-1154904(-)$1	1	118	129	14.1538
...(((..(((	chr7:1482125-1482362(-)$1	1	26	37	16.4615
)).)))..)))	chr21:44846348-44846606(-)$1	1	181	192	17.9038
(.(((....))	chr2:178128930-178129165(-)$1	1	114	125	15.6923
)...))).)))	chr11:567784-568043(-)$1	1	130	141	14.8269
(((((((.(((	chr22:21797710-21797996(+)$1	1	97	108	13.7692
.((((((..((	chr2:61764480-61764736(-)$1	1	59	70	21.8461
(...)))...)	chr1:1822248-1822535(-)$1	1	227	238	16.9423
((.((.(((((	chr19:2270490-2270716(+)$1	1	13	24	15.2115
.)).))))(((	chr3:196755818-196756066(-)$1	1	110	121	13.7692
(.((((...))	chr21:38740046-38740297(+)$1	1	11	22	16.3653
.....))))..	chr17:7476292-7476523(+)$1	1	24	35	16.2692
))))))))).)	chr4:79697703-79697963(+)$1	1	162	173	13.7692
))..)))))).	chr19:2270097-2270395(+)$1	1	23	34	14.3461
((..(.(((.(	chr17:40427825-40428093(-)$1	1	21	32	16.7500
).)))))))).	chr19:575243-575523(+)$1	1	196	207	13.6730
...))))))))	chr9:101867477-101867761(+)$1	1	197	208	19.7307
...)))....)	chr12:109124501-109124760(-)$1	1	95	106	16.2692
.)))).)))))	chr19:1407841-1408200(+)$1	1	67	78	17.0384
((((((...))	chr6:86351858-86352142(-)$1	1	134	145	18.5769
.(((.....((	chr22:20127688-20127958(+)$1	1	84	95	15.1153
(...((...((	chr19:18547997-18548296(-)$1	1	9	20	16.8461
.(..((((.((	chr13:27745068-27745332(-)$1	1	4	15	14.7307
(((.((((...	chr11:118927499-118927773(-)$1	1	18	29	15.3076
(.(........	chr7:5459902-5460144(-)$1	1	216	227	17.5192
.....((.(((	chr9:140713929-140714253(+)$1	1	167	178	16.7500
))(((((((((	chr7:158621823-158622195(-)$1	1	98	109	16.8461
..((((((((.	chr6:86352565-86352819(-)$1	1	38	49	18.5769
((((((.(((.	chr3:41241218-41241473(+)$1	1	25	36	15.1153
...((((.(((	chr19:1410902-1411133(+)$1	1	37	48	17.7115
.((((((((((	chr22:19929457-19929755(+)$1	1	4	15	14.7307
((((((((((.	chr19:1652057-1652294(-)$1	1	2	13	13.8653
)((((((....	chr4:1873824-1874071(+)$1	1	66	77	14.3461
.)))))))(((	chr10:71929879-71930149(-)$1	1	111	122	19.8269

#PSSM
G : 0.40	C : 0.19	g : 0.17	A : 0.15	c : 0.07	
G : 0.32	C : 0.19	g : 0.17	A : 0.13	U : 0.09	c : 0.07	
G : 0.73	g : 0.24	C : 0.01	
G : 0.69	g : 0.23	C : 0.03	A : 0.01	c : 0.01	
C : 0.61	c : 0.21	G : 0.11	u : 0.01	U : 0.01	g : 0.01	
C : 0.53	c : 0.21	G : 0.09	U : 0.07	A : 0.03	u : 0.01	g : 0.01	
G : 0.69	g : 0.19	c : 0.05	C : 0.03	U : 0.01	
A : 0.48	C : 0.13	a : 0.11	G : 0.09	g : 0.07	c : 0.05	U : 0.03	
G : 0.69	g : 0.24	A : 0.03	C : 0.01	
G : 0.69	g : 0.24	C : 0.03	A : 0.01	
G : 0.59	g : 0.24	C : 0.09	U : 0.05	

#score	834.8461538461544
#seq	52
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_transcript_m2_run2.nuc.txt

#NT
ucuga	chr11:17097269-17097486(-)$1	217	152	157	15.0000
UCUGA	chr12:6619558-6619764(+)$1	206	149	154	15.0000
UCUGA	chr11:62620281-62620510(-)$1	229	119	124	15.0000
UCUGA	chr2:101889335-101889558(-)$1	223	149	154	15.0000
UCUGA	chr2:29136455-29136669(+)$1	214	150	155	15.0000
UCUGA	chr2:29149857-29150070(+)$1	213	144	149	15.0000
UCUGA	chr2:101889359-101889566(-)$1	207	157	162	15.0000
UCUGA	chr2:216259150-216259378(-)$1	228	109	114	15.0000
UCUGA	chr2:203155964-203156195(+)$1	231	88	93	15.0000
UCUGA	chr3:160232655-160232860(-)$1	205	26	31	15.0000
UCUGA	chr20:17943370-17943575(-)$1	205	179	184	15.0000
UCUGA	chr11:75111371-75111588(+)$1	217	87	92	15.0000
UCUGA	chr2:216288106-216288330(-)$1	224	170	175	15.0000
UCUGA	chr3:39449894-39450104(+)$1	210	35	40	15.0000
UCUGA	chr2:234197270-234197490(+)$1	220	74	79	15.0000
UCUGA	chr20:2637525-2637728(+)$1	203	75	80	15.0000
UCUGA	chrX:135961293-135961501(-)$1	208	99	104	15.0000
UCUGA	chr2:234197290-234197505(+)$1	215	54	59	15.0000
UCUGA	chr3:133475076-133475280(+)$1	204	52	57	15.0000
UCUGA	chr1:45243974-45244198(+)$1	224	146	151	15.0000
UCUGA	chr2:21245678-21245959(-)$1	281	17	22	15.0000
UCUGA	chr22:39711118-39711322(-)$1	204	93	98	15.0000
UCUGA	chr15:25344579-25344819(+)$1	240	106	111	15.0000
UCUGA	chr7:98479328-98479533(+)$1	205	171	176	15.0000
UCUGA	chr2:216273031-216273249(-)$1	218	67	72	15.0000
ucuga	chr17:8076721-8076924(-)$1	203	147	152	15.0000
UCUGA	chr5:137896662-137896885(-)$1	223	117	122	15.0000
UCUGA	chr17:7480028-7480294(+)$1	266	127	132	15.0000
UCUGA	chr6:86386934-86387187(-)$1	253	168	173	15.0000
UCUGA	chr11:62620720-62620926(-)$1	206	90	95	15.0000
UCUGA	chr4:74279074-74279282(+)$1	208	0	5	15.0000
UCUGA	chr2:203141059-203141299(+)$1	240	89	94	15.0000
UCUGA	chr22:39711164-39711409(-)$1	245	180	185	15.0000
ucuga	chr8:33370972-33371176(+)$1	204	117	122	15.0000
UCUGA	chr3:160232763-160232987(-)$1	224	153	158	15.0000
UCUGA	chr3:52725295-52725539(+)$1	244	156	161	15.0000
UCUGA	chr12:9253954-9254188(-)$1	234	94	99	15.0000
UCUGA	chr3:160232755-160232959(-)$1	204	125	130	15.0000
UCUGA	chr1:173836745-173836964(-)$1	219	86	91	15.0000
UCUGA	chr17:74557618-74557823(+)$1	205	125	130	15.0000
UCUGA	chr12:6619524-6619742(+)$1	218	183	188	15.0000
UCUGA	chr6:133136386-133136596(+)$1	210	122	127	15.0000
UCUGA	chr19:3982417-3982630(-)$1	213	119	124	15.0000
UCUGA	chr11:93454619-93454824(+)$1	205	63	68	15.0000
UCUGA	chr12:7076486-7076690(-)$1	204	3	8	15.0000
ucuga	chr11:122929949-122930154(-)$1	205	103	108	15.0000
UCUGA	chr2:21236210-21236472(-)$1	262	29	34	15.0000
UCUGA	chr3:133475026-133475273(+)$1	247	102	107	15.0000
UCUGA	chr14:103804081-103804321(+)$1	240	136	141	15.0000
UCUGA	chr18:47340704-47340907(+)$1	203	55	60	15.0000
UCUGA	chr5:138614406-138614614(+)$1	208	26	31	15.0000
UCUGA	chr2:21234210-21234439(-)$1	229	25	30	15.0000
UCUGA	chr5:138614414-138614625(+)$1	211	18	23	15.0000
UCUGA	chr20:47895381-47895595(+)$1	214	3	8	15.0000
UCUGA	chr12:9243905-9244124(-)$1	219	175	180	15.0000
UCUGA	chr2:234184445-234184651(+)$1	206	86	91	15.0000
UCUGA	chr2:216272949-216273168(-)$1	219	99	104	15.0000
UCUGA	chr5:138614446-138614663(+)$1	217	168	173	15.0000
UCUGA	chr3:160232651-160232855(-)$1	204	21	26	15.0000
UCUGA	chr9:33952671-33952940(-)$1	269	130	135	15.0000
UCUGA	chr15:25342712-25343001(+)$1	289	133	138	15.0000
UCUGA	chr2:29136491-29136705(+)$1	214	114	119	15.0000
UCUGA	chr14:95999717-95999933(-)$1	216	96	101	15.0000

#otherMatches

#Struct PSSM
c!!ee	chr11:62622008-62622214(-)$1	206	112	117	15.0000
:::DD	chr11:17097269-17097486(-)$1	217	152	157	15.0000
ddd[a	chr12:6619558-6619764(+)$1	206	149	154	15.0000
ddddf	chr11:62620281-62620510(-)$1	229	119	124	15.0000
CCZZZ	chr2:101889335-101889558(-)$1	223	149	154	15.0000
dd22f	chr2:29136455-29136669(+)$1	214	150	155	15.0000
ee[bb	chr2:29149857-29150070(+)$1	213	144	149	15.0000
CCZZZ	chr2:101889359-101889566(-)$1	207	157	162	15.0000
dddd[	chr2:216259150-216259378(-)$1	228	109	114	15.0000
fffGG	chr2:203155964-203156195(+)$1	231	88	93	15.0000
cc"""	chr3:160232655-160232860(-)$1	205	26	31	15.0000
d:eee	chr20:17943370-17943575(-)$1	205	179	184	15.0000
ee"""	chr11:75111371-75111588(+)$1	217	87	92	15.0000
ffffm	chr2:216288106-216288330(-)$1	224	170	175	15.0000
[ccc[	chr3:39449894-39450104(+)$1	210	35	40	15.0000
ggggg	chr2:234197270-234197490(+)$1	220	74	79	15.0000
hhhhh	chr20:2637525-2637728(+)$1	203	75	80	15.0000
FFFdd	chrX:135961293-135961501(-)$1	208	99	104	15.0000
ggggg	chr2:234197290-234197505(+)$1	215	54	59	15.0000
h####	chr3:133475076-133475280(+)$1	204	52	57	15.0000
cc444	chr1:45243974-45244198(+)$1	224	146	151	15.0000
ddd!!	chr2:21245678-21245959(-)$1	281	17	22	15.0000
BBZZZ	chr22:39711118-39711322(-)$1	204	93	98	15.0000
:::::	chr15:25344579-25344819(+)$1	240	106	111	15.0000
:::::	chr7:98479328-98479533(+)$1	205	171	176	15.0000
ooohh	chr2:216273031-216273249(-)$1	218	67	72	15.0000
CCBB}	chr17:8076721-8076924(-)$1	203	147	152	15.0000
hCCCE	chr5:137896662-137896885(-)$1	223	117	122	15.0000
CYYDD	chr17:7480028-7480294(+)$1	266	127	132	15.0000
===ee	chr6:86386934-86387187(-)$1	253	168	173	15.0000
eeuuu	chr11:62620720-62620926(-)$1	206	90	95	15.0000
:DDDD	chr4:74279074-74279282(+)$1	208	0	5	15.0000
::JJJ	chr2:203141059-203141299(+)$1	240	89	94	15.0000
FFFFF	chr22:39711164-39711409(-)$1	245	180	185	15.0000
ddddd	chr8:33370972-33371176(+)$1	204	117	122	15.0000
cc"""	chr3:160232763-160232987(-)$1	224	153	158	15.0000
ggggg	chr3:52725295-52725539(+)$1	244	156	161	15.0000
dddmm	chr12:9253954-9254188(-)$1	234	94	99	15.0000
cc"""	chr3:160232755-160232959(-)$1	204	125	130	15.0000
bbmmm	chr1:173836745-173836964(-)$1	219	86	91	15.0000
dddqq	chr17:74557618-74557823(+)$1	205	125	130	15.0000
:FFFF	chr12:6619524-6619742(+)$1	218	183	188	15.0000
FFZZZ	chr6:133136386-133136596(+)$1	210	122	127	15.0000
fff!!	chr19:3982417-3982630(-)$1	213	119	124	15.0000
odddd	chr11:93454619-93454824(+)$1	205	63	68	15.0000
DDDD:	chr12:7076486-7076690(-)$1	204	3	8	15.0000
CCYYG	chr11:122929949-122930154(-)$1	205	103	108	15.0000
cc:DD	chr2:21236210-21236472(-)$1	262	29	34	15.0000
h####	chr3:133475026-133475273(+)$1	247	102	107	15.0000
ffff]	chr14:103804081-103804321(+)$1	240	136	141	15.0000
cc:::	chr18:47340704-47340907(+)$1	203	55	60	15.0000
:hhhh	chr5:138614406-138614614(+)$1	208	26	31	15.0000
vvbb]	chr2:21234210-21234439(-)$1	229	25	30	15.0000
:hhhh	chr5:138614414-138614625(+)$1	211	18	23	15.0000
d[ccc	chr20:47895381-47895595(+)$1	214	3	8	15.0000
:::::	chr12:9243905-9244124(-)$1	219	175	180	15.0000
"dddd	chr2:234184445-234184651(+)$1	206	86	91	15.0000
mdddd	chr2:216272949-216273168(-)$1	219	99	104	15.0000
h"""c	chr5:138614446-138614663(+)$1	217	168	173	15.0000
cc"""	chr3:160232651-160232855(-)$1	204	21	26	15.0000
ccmmm	chr9:33952671-33952940(-)$1	269	130	135	15.0000
:::::	chr15:25342712-25343001(+)$1	289	133	138	15.0000
dd22f	chr2:29136491-29136705(+)$1	214	114	119	15.0000
!ccca	chr14:95999717-95999933(-)$1	216	96	101	15.0000

#DB
(..((	chr11:62622008-62622214(-)$1	1	112	117	15.0000
...))	chr11:17097269-17097486(-)$1	1	152	157	15.0000
(((.(	chr12:6619558-6619764(+)$1	1	149	154	15.0000
(((((	chr11:62620281-62620510(-)$1	1	119	124	15.0000
))...	chr2:101889335-101889558(-)$1	1	149	154	15.0000
))..)	chr2:29136455-29136669(+)$1	1	150	155	15.0000
((.((	chr2:29149857-29150070(+)$1	1	144	149	15.0000
))...	chr2:101889359-101889566(-)$1	1	157	162	15.0000
((((.	chr2:216259150-216259378(-)$1	1	109	114	15.0000
)))((	chr2:203155964-203156195(+)$1	1	88	93	15.0000
((...	chr3:160232655-160232860(-)$1	1	26	31	15.0000
).(((	chr20:17943370-17943575(-)$1	1	179	184	15.0000
((...	chr11:75111371-75111588(+)$1	1	87	92	15.0000
((((.	chr2:216288106-216288330(-)$1	1	170	175	15.0000
.(((.	chr3:39449894-39450104(+)$1	1	35	40	15.0000
(((((	chr2:234197270-234197490(+)$1	1	74	79	15.0000
)))))	chr20:2637525-2637728(+)$1	1	75	80	15.0000
)))((	chrX:135961293-135961501(-)$1	1	99	104	15.0000
(((((	chr2:234197290-234197505(+)$1	1	54	59	15.0000
(....	chr3:133475076-133475280(+)$1	1	52	57	15.0000
))...	chr1:45243974-45244198(+)$1	1	146	151	15.0000
(((..	chr2:21245678-21245959(-)$1	1	17	22	15.0000
))...	chr22:39711118-39711322(-)$1	1	93	98	15.0000
.....	chr15:25344579-25344819(+)$1	1	106	111	15.0000
.....	chr7:98479328-98479533(+)$1	1	171	176	15.0000
...))	chr2:216273031-216273249(-)$1	1	67	72	15.0000
)))).	chr17:8076721-8076924(-)$1	1	147	152	15.0000
)))))	chr5:137896662-137896885(-)$1	1	117	122	15.0000
)..))	chr17:7480028-7480294(+)$1	1	127	132	15.0000
)))((	chr6:86386934-86387187(-)$1	1	168	173	15.0000
((...	chr11:62620720-62620926(-)$1	1	90	95	15.0000
.((((	chr4:74279074-74279282(+)$1	1	0	5	15.0000
..(((	chr2:203141059-203141299(+)$1	1	89	94	15.0000
)))))	chr22:39711164-39711409(-)$1	1	180	185	15.0000
)))))	chr8:33370972-33371176(+)$1	1	117	122	15.0000
((...	chr3:160232763-160232987(-)$1	1	153	158	15.0000
(((((	chr3:52725295-52725539(+)$1	1	156	161	15.0000
(((..	chr12:9253954-9254188(-)$1	1	94	99	15.0000
((...	chr3:160232755-160232959(-)$1	1	125	130	15.0000
((...	chr1:173836745-173836964(-)$1	1	86	91	15.0000
(((..	chr17:74557618-74557823(+)$1	1	125	130	15.0000
.))))	chr12:6619524-6619742(+)$1	1	183	188	15.0000
))...	chr6:133136386-133136596(+)$1	1	122	127	15.0000
(((..	chr19:3982417-3982630(-)$1	1	119	124	15.0000
.))))	chr11:93454619-93454824(+)$1	1	63	68	15.0000
((((.	chr12:7076486-7076690(-)$1	1	3	8	15.0000
))..)	chr11:122929949-122930154(-)$1	1	103	108	15.0000
)).((	chr2:21236210-21236472(-)$1	1	29	34	15.0000
(....	chr3:133475026-133475273(+)$1	1	102	107	15.0000
)))).	chr14:103804081-103804321(+)$1	1	136	141	15.0000
))...	chr18:47340704-47340907(+)$1	1	55	60	15.0000
.((((	chr5:138614406-138614614(+)$1	1	26	31	15.0000
..)).	chr2:21234210-21234439(-)$1	1	25	30	15.0000
.((((	chr5:138614414-138614625(+)$1	1	18	23	15.0000
(.(((	chr20:47895381-47895595(+)$1	1	3	8	15.0000
.....	chr12:9243905-9244124(-)$1	1	175	180	15.0000
.((((	chr2:234184445-234184651(+)$1	1	86	91	15.0000
.))))	chr2:216272949-216273168(-)$1	1	99	104	15.0000
(...(	chr5:138614446-138614663(+)$1	1	168	173	15.0000
((...	chr3:160232651-160232855(-)$1	1	21	26	15.0000
((...	chr9:33952671-33952940(-)$1	1	130	135	15.0000
.....	chr15:25342712-25343001(+)$1	1	133	138	15.0000
))..)	chr2:29136491-29136705(+)$1	1	114	119	15.0000
.((((	chr14:95999717-95999933(-)$1	1	96	101	15.0000

#PSSM
U : 0.93	u : 0.06	
C : 0.93	c : 0.06	
U : 0.93	u : 0.06	
G : 0.93	g : 0.06	
A : 0.93	a : 0.06	

#score	960.0
#seq	64
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_UTR_m1_run2.nuc.txt

#NT
GGGGGGAGGUGGGGGCGGGGG	chr17:58469261-58469513(-)$1	252	90	111	32.4339
gggaaggggcggggggaggcg	chr19:42788118-42788376(+)$1	258	42	63	31.3962
ggggcggggugcggagcgggc	chr17:36955683-36955949(-)$1	266	46	67	26.8679
aggaggagguggggugggggg	chr2:20550260-20550592(-)$1	332	81	102	28.3773
GUGGGGGGGAGGGGGGAGGGG	chr7:130146008-130146259(-)$1	251	91	112	33.6603
GGGUGGGGGUUGGGGUGGGGG	chr5:137088310-137088517(-)$1	207	45	66	31.1132
GGGGUGGGGUUUGGGGUGGGG	chr17:56168019-56168273(+)$1	254	86	107	28.5660
GGGCGGGGGUCGGGGUUGGGC	chr12:56122294-56122549(-)$1	255	45	66	29.0377
GGGGUGGGGUGGGGGGCUGUG	chr19:42751643-42751906(-)$1	263	71	92	27.0566
GGCAGGGGUUGGGGGCCGGGG	chr8:145650502-145650749(-)$1	247	86	107	28.3773
ggaagggggaggagggaggga	chr17:43225897-43226213(+)$1	316	18	39	28.9433
GGUGGGGGGUGGGGGGAAGAG	chr2:89049606-89049874(+)$1	268	97	118	28.7547
GGGGUGGGGUGGGGCCAGGUC	chr4:2935707-2935963(-)$1	256	16	37	25.3584
cggaggcgggcgggggagggg	chr2:191513660-191513958(+)$1	298	55	76	27.6226
GGUGGGGGGAGUGGUGAGGGG	chr19:50815321-50815592(-)$1	271	87	108	28.0000
Gggggaggguggggggaggga	chr11:73116996-73117250(-)$1	254	77	98	33.7547
ggagaggggcggggggugggc	chr2:85198133-85198394(+)$1	261	74	95	28.4716
GGGAGGGGAUcggggccgggc	chr22:39853277-39853545(+)$1	268	93	114	27.3396
GGGGCGGGGUGGGGGGAGGGG	chr16:30935317-30935596(+)$1	279	87	108	36.9622
AGGAGGAGGGCUGGGGAGGGG	chr6:106773179-106773452(-)$1	273	91	112	24.5094
ggggcggggugggagggggGG	chr1:27022738-27022988(+)$1	250	85	106	31.0188
GGGAGGGGUGGAGGGGAGGAA	chr11:795568-795846(-)$1	278	72	93	25.0754
GGGAGGUGGUGGUGGGUGGGA	chr12:54679568-54679794(+)$1	226	101	122	28.3773
GGGUGGGGGCGCAGGGAGCGG	chr16:28875108-28875341(+)$1	233	83	104	25.6415
ggguagggguggggggagcgg	chr1:155947795-155948092(-)$1	297	104	125	32.0566
GGGCAGGGGGUGGGGCAGGGC	chr11:404660-404978(+)$1	318	105	126	26.3962
GGUAGGGGCGGGGGGGUGGGG	chr3:9519618-9519842(+)$1	224	61	82	29.9811
gggcggggcuggcggggcggc	chr9:131102849-131103156(+)$1	307	102	123	24.1320
GGCGGGGGGAGGGGGGCGGGC	chr20:32441460-32441715(+)$1	255	90	111	31.8679
GGAAGGGGCGGGGGAGAGGGA	chr4:26322445-26322779(+)$1	334	123	144	25.8301
aggagggggaggagggagcgg	chr17:55333991-55334263(+)$1	272	2	23	27.0566
GGUGGGUGGGGUGGGGUGGGC	chr3:10320952-10321247(+)$1	295	95	116	24.7924
UGGGGGGGGUGGGGGCGGGGG	chr1:27929984-27930265(-)$1	281	36	57	32.1509
GGGAGGGGGCGGGGGAGGCUG	chr12:76477602-76477851(-)$1	249	37	58	26.3018
CGGAGGGGGAUGGGCGGGGGC	chr1:87380261-87380569(+)$1	308	20	41	25.6415
GGGAGGGGGUGGGGGGAGGGC	chr2:28974737-28975050(+)$1	313	94	115	39.6981
gggagggggaggagagagagg	chr7:24612850-24613116(+)$1	266	177	198	26.9622
ggguggggguggggggAGCCG	chr16:447653-447917(+)$1	264	76	97	31.3018
gggaggggcccggggcggggc	chr2:242447528-242447819(-)$1	291	12	33	26.2075
gggggcgggcggggggcgggc	chr19:15442617-15442856(-)$1	239	88	109	30.9245
CGGCGGGGGUGGGGGGGCGGG	chr1:22379664-22379926(+)$1	262	83	104	29.5094
gggaggggguuggggggaggg	chr17:45771375-45771652(+)$1	277	20	41	32.1509
GGGAGUGGGGAGGGAGAGGGC	chr7:100732786-100733059(+)$1	273	97	118	26.3018
GGGGUGGGGUGGGGUUGGGGC	chr22:19704631-19704874(+)$1	243	76	97	27.7169
UGGAAGGGGCGGGGGGCGGGG	chr16:30958910-30959205(+)$1	295	13	34	29.6037
GGCAGGGGGUGGGGGGGGCGC	chr11:58346515-58346825(+)$1	310	63	84	31.3018
GGUAGGGGGUGCGGUGGGGGG	chr11:85779666-85779924(-)$1	258	5	26	29.2264
gcgaggagguggggggagugg	chr1:32403280-32403534(-)$1	254	208	229	28.1886
GGGUGGGUGGGAGGGGAGGGU	chr12:56632326-56632612(-)$1	286	250	271	26.0188
GGGGUGGGGUGGGGCCAGGUC	chr4:2935794-2936058(-)$1	264	111	132	25.3584
GGGGGGAGGGUUGGGGAGGGG	chr1:59247122-59247362(-)$1	240	33	54	28.1886
GGUGGGGGUUGgggggagggg	chr2:46926276-46926568(+)$1	292	46	67	33.1886

#otherMatches

#Struct PSSM
YYCCC}DDDDYYBB}DDDD}C	chr14:92302621-92302943(-)$1	322	73	94	27.0566
gg::bb[dddd!!ddddnnnn	chr17:58469261-58469513(-)$1	252	90	111	32.4339
DDMMMMDDDDNNNNNEEEEE:	chr19:42788118-42788376(+)$1	258	42	63	31.3962
llbb]a]ggggggg::::DDD	chr17:36955683-36955949(-)$1	266	46	67	26.8679
JJJJJCCCEEEEE{CCCKKDD	chr2:20550260-20550592(-)$1	332	81	102	28.3773
ggggbb[eeeeeccc"""bbm	chr7:130146008-130146259(-)$1	251	91	112	33.6603
dddd[ffffff[ggggggg!!	chr5:137088310-137088517(-)$1	207	45	66	31.1132
JJJ{EEEEELLLHHHHHHHH{	chr17:56168019-56168273(+)$1	254	86	107	28.5660
GGGGGG{EEEEE{BBffffff	chr12:56122294-56122549(-)$1	255	45	66	29.0377
EEEEE{IIIIIIIII{HHHHH	chr19:42751643-42751906(-)$1	263	71	92	27.0566
JJJJJJJJKKFFFFFF:eeee	chr8:145650502-145650749(-)$1	247	86	107	28.3773
MGGGGGGGDDDD{BBLLLCCC	chr17:43225897-43226213(+)$1	316	18	39	28.9433
ggggggghhhhhhhh666666	chr2:89049606-89049874(+)$1	268	97	118	28.7547
EEEE:hhhhhhhh!!bb[ccc	chr4:2935707-2935963(-)$1	256	16	37	25.3584
bmmmmbb]a]aJJJJJJJJJJ	chr2:191513660-191513958(+)$1	298	55	76	27.6226
cCCC}FFFFFF}DDDDddddm	chr19:50815321-50815592(-)$1	271	87	108	28.0000
=======[bb[ccc!!bb!!b	chr11:73116996-73117250(-)$1	254	77	98	33.7547
:::a[==========a[hhhh	chr2:85198133-85198394(+)$1	261	74	95	28.4716
B}CCC}CCC}DDDDBBCCCKK	chr22:39853277-39853545(+)$1	268	93	114	27.3396
eeeee####dddd[a[dddd!	chr16:30935317-30935596(+)$1	279	87	108	36.9622
a]dddd]ddddFFFFFF}A:d	chr6:106773179-106773452(-)$1	273	91	112	24.5094
ffEEEEEFFFFFF:bb[dddd	chr1:27022738-27022988(+)$1	250	85	106	31.0188
====ggggggg]dddd]bb::	chr11:795568-795846(-)$1	278	72	93	25.0754
EEKKBB{CCCa[a[ccc[bb#	chr12:54679568-54679794(+)$1	226	101	122	28.3773
ceeeee[dddd!!bb!!dddd	chr16:28875108-28875341(+)$1	233	83	104	25.6415
]ccc::::::::::a!!cccn	chr1:155947795-155948092(-)$1	297	104	125	32.0566
qqqqqffffffGGGGGGG::d	chr11:404660-404978(+)$1	318	105	126	26.3962
fff22bbFFFFFFBB}EEEEE	chr3:9519618-9519842(+)$1	224	61	82	29.9811
ggg"""ggggggg"""ccc[b	chr9:131102849-131103156(+)$1	307	102	123	24.1320
ccffffffeeeee[eeeee!!	chr20:32441460-32441715(+)$1	255	90	111	31.8679
]a22a22ffffff]bb]dddd	chr4:26322445-26322779(+)$1	334	123	144	25.8301
{BB{A{EEEEE:BB{A{BBFF	chr17:55333991-55334263(+)$1	272	2	23	27.0566
bb]bb]ffffff:ccc[eeee	chr3:10320952-10321247(+)$1	295	95	116	24.7924
=========:BB{DDDD{HHH	chr1:27929984-27930265(-)$1	281	36	57	32.1509
iiiii####ffffff[apppp	chr12:76477602-76477851(-)$1	249	37	58	26.3018
apppppppa]a]a]bb]a]cc	chr1:87380261-87380569(+)$1	308	20	41	25.6415
F{A{DDDD{BB{BB{BB{CCC	chr2:28974737-28975050(+)$1	313	94	115	39.6981
bb!!eeeee[eeeee((((((	chr7:24612850-24613116(+)$1	266	177	198	26.9622
HH{A{EEEEE::bb[dddd[e	chr16:447653-447917(+)$1	264	76	97	31.3018
A{GGGGGGGFFFFFFKKA{HH	chr2:242447528-242447819(-)$1	291	12	33	26.2075
[ccc[ffffff[a!!gggggg	chr19:15442617-15442856(-)$1	239	88	109	30.9245
======]a]a]bbhhhhhhhh	chr1:22379664-22379926(+)$1	262	83	104	29.5094
uuuuuuuuccc]a::::::::	chr17:45771375-45771652(+)$1	277	20	41	32.1509
gg22eeeee::FFFFFFCCCh	chr7:100732786-100733059(+)$1	273	97	118	26.3018
{DDDDccc[ccccccmmmmcc	chr22:19704631-19704874(+)$1	243	76	97	27.7169
NNNNDDDD{GGGGGGG{CCCb	chr16:30958910-30959205(+)$1	295	13	34	29.6037
ddd[gggggggpppppppggg	chr11:58346515-58346825(+)$1	310	63	84	31.3018
FFFKKA{CCC:iiiiiiiii[	chr11:85779666-85779924(-)$1	258	5	26	29.2264
ccooooooccc]ccc]a]a::	chr1:32403280-32403534(-)$1	254	208	229	28.1886
GGG}IIIIIIIII}EEEEEYY	chr12:56632326-56632612(-)$1	286	250	271	26.0188
HHCCChhhhhhhh!!bb[ccc	chr4:2935794-2936058(-)$1	264	111	132	25.3584
ffCCC{CCCeeeee[eeeee!	chr1:59247122-59247362(-)$1	240	33	54	28.1886
4444dddd]ggggggg]ffff	chr2:46926276-46926568(+)$1	292	46	67	33.1886

#DB
..))).))))..)).)))).)	chr14:92302621-92302943(-)$1	1	73	94	27.0566
))..((.((((..((((....	chr17:58469261-58469513(-)$1	1	90	111	32.4339
((....((((.....(((((.	chr19:42788118-42788376(+)$1	1	42	63	31.3962
..)).).)))))))....)))	chr17:36955683-36955949(-)$1	1	46	67	26.8679
(((((((((((((.(((..((	chr2:20550260-20550592(-)$1	1	81	102	28.3773
))))((.((((((((...((.	chr7:130146008-130146259(-)$1	1	91	112	33.6603
((((.((((((.(((((((..	chr5:137088310-137088517(-)$1	1	45	66	31.1132
(((.(((((...((((((((.	chr17:56168019-56168273(+)$1	1	86	107	28.5660
((((((.(((((.((((((((	chr12:56122294-56122549(-)$1	1	45	66	29.0377
(((((.(((((((((.(((((	chr19:42751643-42751906(-)$1	1	71	92	27.0566
((((((((..((((((.((((	chr8:145650502-145650749(-)$1	1	86	107	28.3773
.(((((((((((.((...(((	chr17:43225897-43226213(+)$1	1	18	39	28.9433
)))))))))))))))......	chr2:89049606-89049874(+)$1	1	97	118	28.7547
((((.((((((((..((.(((	chr4:2935707-2935963(-)$1	1	16	37	25.3584
(....)).).)((((((((((	chr2:191513660-191513958(+)$1	1	55	76	27.6226
)))).)))))).))))((((.	chr19:50815321-50815592(-)$1	1	87	108	28.0000
(((((((.((.(((..((..(	chr11:73116996-73117250(-)$1	1	77	98	33.7547
...(.(((((((((((.((((	chr2:85198133-85198394(+)$1	1	74	95	28.4716
).))).))).))))))(((..	chr22:39853277-39853545(+)$1	1	93	114	27.3396
(((((....((((.(.((((.	chr16:30935317-30935596(+)$1	1	87	108	36.9622
).)))).)))))))))).).(	chr6:106773179-106773452(-)$1	1	91	112	24.5094
))(((((((((((.((.((((	chr1:27022738-27022988(+)$1	1	85	106	31.0188
))))))))))).)))).))..	chr11:795568-795846(-)$1	1	72	93	25.0754
((..((.((((.(.(((.((.	chr12:54679568-54679794(+)$1	1	101	122	28.3773
)(((((.((((..((..((((	chr16:28875108-28875341(+)$1	1	83	104	25.6415
.)))..........(..(((.	chr1:155947795-155948092(-)$1	1	104	125	32.0566
.....))))))(((((((..(	chr11:404660-404978(+)$1	1	105	126	26.3962
)))..)))))))))).)))))	chr3:9519618-9519842(+)$1	1	61	82	29.9811
(((...(((((((...(((.(	chr9:131102849-131103156(+)$1	1	102	123	24.1320
))))))))(((((.(((((..	chr20:32441460-32441715(+)$1	1	90	111	31.8679
.)..)..)))))).)).))))	chr4:26322445-26322779(+)$1	1	123	144	25.8301
.((.(.(((((.((.(.((((	chr17:55333991-55334263(+)$1	1	2	23	27.0566
)).)).)))))).(((.((((	chr3:10320952-10321247(+)$1	1	95	116	24.7924
))))))))).((.((((.(((	chr1:27929984-27930265(-)$1	1	36	57	32.1509
(((((....((((((.(....	chr12:76477602-76477851(-)$1	1	37	58	26.3018
(.......).).).)).).))	chr1:87380261-87380569(+)$1	1	20	41	25.6415
(.(.((((.((.((.((.(((	chr2:28974737-28975050(+)$1	1	94	115	39.6981
((..(((((.(((((......	chr7:24612850-24613116(+)$1	1	177	198	26.9622
((.(.(((((..((.((((.(	chr16:447653-447917(+)$1	1	76	97	31.3018
(.(((((((((((((..(.((	chr2:242447528-242447819(-)$1	1	12	33	26.2075
.(((.((((((.(..((((((	chr19:15442617-15442856(-)$1	1	88	109	30.9245
)))))).).).))))))))))	chr1:22379664-22379926(+)$1	1	83	104	29.5094
........))).)........	chr17:45771375-45771652(+)$1	1	20	41	32.1509
))..)))))..((((((((((	chr7:100732786-100733059(+)$1	1	97	118	26.3018
.(((((((.((((((....))	chr22:19704631-19704874(+)$1	1	76	97	27.7169
....((((.(((((((.((((	chr16:30958910-30959205(+)$1	1	13	34	29.6037
(((.(((((((.......)))	chr11:58346515-58346825(+)$1	1	63	84	31.3018
(((..(.(((.(((((((((.	chr11:85779666-85779924(-)$1	1	5	26	29.2264
((......))).))).).)..	chr1:32403280-32403534(-)$1	1	208	229	28.1886
))).))))))))).)))))..	chr12:56632326-56632612(-)$1	1	250	271	26.0188
(((((((((((((..((.(((	chr4:2935794-2936058(-)$1	1	111	132	25.3584
))(((.((((((((.(((((.	chr1:59247122-59247362(-)$1	1	33	54	28.1886
....)))).))))))).))))	chr2:46926276-46926568(+)$1	1	46	67	33.1886

#PSSM
G : 0.60	g : 0.24	a : 0.03	U : 0.03	C : 0.03	c : 0.01	A : 0.01	
G : 0.66	g : 0.30	U : 0.01	c : 0.01	
G : 0.49	g : 0.28	U : 0.11	C : 0.05	a : 0.03	A : 0.01	
A : 0.28	G : 0.28	a : 0.16	g : 0.09	U : 0.05	C : 0.05	u : 0.03	c : 0.01	
G : 0.52	g : 0.22	U : 0.09	a : 0.05	c : 0.03	A : 0.03	C : 0.01	
G : 0.64	g : 0.28	U : 0.03	a : 0.01	c : 0.01	
G : 0.58	g : 0.26	A : 0.05	a : 0.03	U : 0.03	c : 0.01	
G : 0.66	g : 0.32	U : 0.01	
G : 0.56	g : 0.28	U : 0.05	C : 0.03	c : 0.03	A : 0.01	
U : 0.37	u : 0.16	G : 0.16	c : 0.07	A : 0.07	a : 0.05	C : 0.05	g : 0.01	
G : 0.49	g : 0.26	U : 0.09	c : 0.05	A : 0.03	C : 0.03	u : 0.01	
G : 0.45	g : 0.33	U : 0.09	C : 0.05	A : 0.03	c : 0.01	
G : 0.60	g : 0.28	a : 0.05	U : 0.01	A : 0.01	c : 0.01	
G : 0.64	g : 0.33	a : 0.01	
G : 0.49	g : 0.30	C : 0.05	U : 0.05	a : 0.03	A : 0.03	u : 0.01	
G : 0.45	g : 0.32	C : 0.11	U : 0.05	c : 0.03	A : 0.01	
A : 0.32	G : 0.16	a : 0.16	g : 0.09	U : 0.09	C : 0.07	c : 0.05	u : 0.01	
G : 0.60	g : 0.30	U : 0.01	A : 0.01	c : 0.01	C : 0.01	a : 0.01	
G : 0.58	g : 0.26	C : 0.07	c : 0.03	a : 0.01	u : 0.01	
G : 0.54	g : 0.30	U : 0.07	A : 0.03	c : 0.01	C : 0.01	
G : 0.37	C : 0.20	g : 0.16	c : 0.11	A : 0.07	a : 0.03	U : 0.01	

#score	1531.8301886792462
#seq	53
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF304YLR_TBRG4_transcript_m1_run1.nuc.txt

#NT
ACUAAUC	chrM:10710-10950(+)$1	240	58	65	17.5492
ACUAUUC	chrM:15392-15603(+)$1	211	83	90	14.0985
ACUAUUC	chr1:568952-569203(+)$1	251	18	25	14.0985
ACUAACC	chrM:10194-10408(+)$1	214	108	115	13.6760
ACUAAUA	chrM:9744-9957(+)$1	213	128	135	13.8169
ACUAAUC	chrM:8594-8814(+)$1	220	55	62	17.5492
AAUAAUC	chrM:6475-6684(+)$1	209	184	191	13.3239
ACUAUUC	chrM:11657-11868(+)$1	211	77	84	14.0985
ACUAAAC	chrM:13608-13840(+)$1	232	78	85	13.5352
AAUAAUC	chrM:6484-6705(+)$1	221	175	182	13.3239
CCUAAUC	chrM:15708-15927(+)$1	219	124	131	12.9718
ACUAAUC	chrM:11032-11262(+)$1	230	21	28	17.5492
ACUAAUC	chrM:7744-7957(+)$1	213	186	193	17.5492
ACUAUUC	chrM:11668-11876(+)$1	208	66	73	14.0985
ACUAAUC	chrM:12622-12862(+)$1	240	98	105	17.5492
ACUAAUC	chrM:8510-8744(+)$1	234	139	146	17.5492
CCUAAUC	chrM:6439-6675(+)$1	236	28	35	12.9718
ACUAAUC	chrM:7778-7983(+)$1	205	152	159	17.5492
AAUAAUC	chrM:6564-6772(+)$1	208	95	102	13.3239
ACUAAUC	chrM:7789-7993(+)$1	204	141	148	17.5492
ACUAAAC	chrM:11267-11493(+)$1	226	11	18	13.5352
ACUCAUC	chrM:13947-14170(+)$1	223	171	178	13.1830
ACUGAUC	chrM:8437-8640(+)$1	203	152	159	13.1126
ACUAACC	chrM:10173-10380(+)$1	207	129	136	13.6760
ACUAAUC	chrM:7793-8044(+)$1	251	137	144	17.5492
ACUACUC	chrM:13398-13610(+)$1	212	21	28	13.7464
ACUAAUC	chrM:7910-8119(+)$1	209	20	27	17.5492
acuuauc	chr3:25508894-25509134(+)$1	240	122	129	13.3239
ACUAUUC	chrM:8405-8637(+)$1	232	17	24	14.0985
CCUAAUC	chrM:5324-5599(+)$1	275	30	37	12.9718
ACUAAUA	chrM:9757-9977(+)$1	220	115	122	13.8169
ACUAUUC	chr5:134262633-134262925(-)$1	292	173	180	14.0985
ACUAAUC	chrM:7869-8109(+)$1	240	61	68	17.5492
ACUAACC	chrM:10131-10346(+)$1	215	171	178	13.6760
ACUAAUC	chrM:7783-7989(+)$1	206	147	154	17.5492
ACUUAUC	chrM:10803-11027(+)$1	224	204	211	13.3239
ACUACUC	chrM:13305-13575(+)$1	270	114	121	13.7464
ACUAUUC	chrM:15404-15625(+)$1	221	71	78	14.0985
ACUAAAC	chrM:13589-13808(+)$1	219	97	104	13.5352
ACUAAAC	chrM:4778-5019(+)$1	241	135	142	13.5352
ACUAAUA	chrM:9835-10043(+)$1	208	37	44	13.8169
ACUAAUC	chrM:8584-8794(+)$1	210	65	72	17.5492
ACUAACC	chrM:10146-10373(+)$1	227	156	163	13.6760
ACUAAUC	chrM:8440-8658(+)$1	218	209	216	17.5492
ACUAAUC	chrM:7844-8049(+)$1	205	86	93	17.5492
ACUAAUA	chrM:9779-9983(+)$1	204	93	100	13.8169
ACUUAUC	chrM:10827-11055(+)$1	228	180	187	13.3239
ACUAAUA	chrM:9726-9943(+)$1	217	146	153	13.8169
ACUAAUC	chrM:10756-10982(+)$1	226	12	19	17.5492
AAUAAUC	chrM:6535-6761(+)$1	226	124	131	13.3239
ACUAAUC	chrM:13142-13371(+)$1	229	7	14	17.5492
ACUAACC	chrM:10187-10394(+)$1	207	115	122	13.6760
ACUAAUC	chrM:10869-11084(+)$1	215	184	191	17.5492
ACUAUUC	chr16:10816694-10816927(-)$1	233	83	90	14.0985
ACUAAUC	chrM:12567-12821(+)$1	254	153	160	17.5492
AAUAAUC	chrM:15590-15813(+)$1	223	62	69	13.3239
ACUAAUC	chrM:8614-8840(+)$1	226	35	42	17.5492
ACUACUC	chrM:13393-13598(+)$1	205	26	33	13.7464
ACUAAUA	chrM:9783-10002(+)$1	219	89	96	13.8169
ACUAAUC	chrM:12533-12742(+)$1	209	187	194	17.5492
ACUAAUC	chrM:7757-7978(+)$1	221	173	180	17.5492
ACUAUUC	chrM:15458-15708(+)$1	250	17	24	14.0985
ACUAAUU	chr5:134263533-134263776(-)$1	243	58	65	13.3943
ACUAACC	chrM:10209-10429(+)$1	220	93	100	13.6760
ACUAAUA	chrM:9802-10028(+)$1	226	70	77	13.8169
ACUUAUC	chrM:9033-9282(+)$1	249	60	67	13.3239
ACUCAUC	chrM:6799-7050(+)$1	251	183	190	13.1830
ACUACUC	chrM:13375-13593(+)$1	218	44	51	13.7464
AUUAAUC	chrM:12501-12710(+)$1	209	175	182	13.0422
ACUAAUU	chrM:4318-4544(+)$1	226	148	155	13.3943

#otherMatches

#Struct PSSM
:::::::	chrM:9828-10035(+)$1	207	44	51	13.8169
:::::::	chrM:10710-10950(+)$1	240	58	65	17.5492
:::::cc	chrM:15392-15603(+)$1	211	83	90	14.0985
:::::::	chr1:568952-569203(+)$1	251	18	25	14.0985
%ccc"""	chrM:10194-10408(+)$1	214	108	115	13.6760
e]dddd:	chrM:9744-9957(+)$1	213	128	135	13.8169
d++++++	chrM:8594-8814(+)$1	220	55	62	17.5492
:::::::	chrM:6475-6684(+)$1	209	184	191	13.3239
:::::::	chrM:11657-11868(+)$1	211	77	84	14.0985
^^^^^^^	chrM:13608-13840(+)$1	232	78	85	13.5352
:::::::	chrM:6484-6705(+)$1	221	175	182	13.3239
:::::::	chrM:15708-15927(+)$1	219	124	131	12.9718
:::::::	chrM:11032-11262(+)$1	230	21	28	17.5492
:::::::	chrM:7744-7957(+)$1	213	186	193	17.5492
:::::::	chrM:11668-11876(+)$1	208	66	73	14.0985
:::::::	chrM:12622-12862(+)$1	240	98	105	17.5492
:::::::	chrM:8510-8744(+)$1	234	139	146	17.5492
:::::::	chrM:6439-6675(+)$1	236	28	35	12.9718
FFFF:::	chrM:7778-7983(+)$1	205	152	159	17.5492
:::::::	chrM:6564-6772(+)$1	208	95	102	13.3239
c[dddd^	chrM:7789-7993(+)$1	204	141	148	17.5492
f^^^^^^	chrM:11267-11493(+)$1	226	11	18	13.5352
:::::::	chrM:13947-14170(+)$1	223	171	178	13.1830
:::eeee	chrM:8437-8640(+)$1	203	152	159	13.1126
eeeeuuu	chrM:10173-10380(+)$1	207	129	136	13.6760
c[dddd^	chrM:7793-8044(+)$1	251	137	144	17.5492
^^^^^^^	chrM:13398-13610(+)$1	212	21	28	13.7464
c^^^^^^	chrM:7910-8119(+)$1	209	20	27	17.5492
:::::::	chr3:25508894-25509134(+)$1	240	122	129	13.3239
:::::::	chrM:8405-8637(+)$1	232	17	24	14.0985
FFFFF::	chrM:5324-5599(+)$1	275	30	37	12.9718
e]dddd:	chrM:9757-9977(+)$1	220	115	122	13.8169
:::::::	chr5:134262633-134262925(-)$1	292	173	180	14.0985
c[dddd^	chrM:7869-8109(+)$1	240	61	68	17.5492
eeeeuuu	chrM:10131-10346(+)$1	215	171	178	13.6760
:::::::	chrM:7783-7989(+)$1	206	147	154	17.5492
d::::::	chrM:10803-11027(+)$1	224	204	211	13.3239
^^^^^^^	chrM:13305-13575(+)$1	270	114	121	13.7464
:::::cc	chrM:15404-15625(+)$1	221	71	78	14.0985
^^^^^^^	chrM:13589-13808(+)$1	219	97	104	13.5352
bbnnnnn	chrM:4778-5019(+)$1	241	135	142	13.5352
DDDD:::	chrM:9835-10043(+)$1	208	37	44	13.8169
d++++++	chrM:8584-8794(+)$1	210	65	72	17.5492
c]ccc88	chrM:10146-10373(+)$1	227	156	163	13.6760
:::::::	chrM:8440-8658(+)$1	218	209	216	17.5492
c^^^^^^	chrM:7844-8049(+)$1	205	86	93	17.5492
e]dddd:	chrM:9779-9983(+)$1	204	93	100	13.8169
d::::::	chrM:10827-11055(+)$1	228	180	187	13.3239
e]dddd:	chrM:9726-9943(+)$1	217	146	153	13.8169
:::::::	chrM:10756-10982(+)$1	226	12	19	17.5492
:::::::	chrM:6535-6761(+)$1	226	124	131	13.3239
:::::::	chrM:13142-13371(+)$1	229	7	14	17.5492
eeeeuuu	chrM:10187-10394(+)$1	207	115	122	13.6760
:::::::	chrM:10869-11084(+)$1	215	184	191	17.5492
>>>>>>>	chr16:10816694-10816927(-)$1	233	83	90	14.0985
:::::::	chrM:12567-12821(+)$1	254	153	160	17.5492
:::::::	chrM:15590-15813(+)$1	223	62	69	13.3239
d++++++	chrM:8614-8840(+)$1	226	35	42	17.5492
^^^^^^^	chrM:13393-13598(+)$1	205	26	33	13.7464
e]dddd:	chrM:9783-10002(+)$1	219	89	96	13.8169
:::::::	chrM:12533-12742(+)$1	209	187	194	17.5492
FFFF:::	chrM:7757-7978(+)$1	221	173	180	17.5492
:::::::	chrM:15458-15708(+)$1	250	17	24	14.0985
::ggggg	chr5:134263533-134263776(-)$1	243	58	65	13.3943
eeeeuuu	chrM:10209-10429(+)$1	220	93	100	13.6760
:::::::	chrM:9802-10028(+)$1	226	70	77	13.8169
^^^^^^^	chrM:9033-9282(+)$1	249	60	67	13.3239
:::::::	chrM:6799-7050(+)$1	251	183	190	13.1830
:::::::	chrM:13375-13593(+)$1	218	44	51	13.7464
@@@@@GG	chrM:12501-12710(+)$1	209	175	182	13.0422
c]hhhhh	chrM:4318-4544(+)$1	226	148	155	13.3943

#DB
.......	chrM:9828-10035(+)$1	1	44	51	13.8169
.......	chrM:10710-10950(+)$1	1	58	65	17.5492
.....((	chrM:15392-15603(+)$1	1	83	90	14.0985
.......	chr1:568952-569203(+)$1	1	18	25	14.0985
.(((...	chrM:10194-10408(+)$1	1	108	115	13.6760
).)))).	chrM:9744-9957(+)$1	1	128	135	13.8169
(......	chrM:8594-8814(+)$1	1	55	62	17.5492
.......	chrM:6475-6684(+)$1	1	184	191	13.3239
.......	chrM:11657-11868(+)$1	1	77	84	14.0985
.......	chrM:13608-13840(+)$1	1	78	85	13.5352
.......	chrM:6484-6705(+)$1	1	175	182	13.3239
.......	chrM:15708-15927(+)$1	1	124	131	12.9718
.......	chrM:11032-11262(+)$1	1	21	28	17.5492
.......	chrM:7744-7957(+)$1	1	186	193	17.5492
.......	chrM:11668-11876(+)$1	1	66	73	14.0985
.......	chrM:12622-12862(+)$1	1	98	105	17.5492
.......	chrM:8510-8744(+)$1	1	139	146	17.5492
.......	chrM:6439-6675(+)$1	1	28	35	12.9718
))))...	chrM:7778-7983(+)$1	1	152	159	17.5492
.......	chrM:6564-6772(+)$1	1	95	102	13.3239
(.((((.	chrM:7789-7993(+)$1	1	141	148	17.5492
(......	chrM:11267-11493(+)$1	1	11	18	13.5352
.......	chrM:13947-14170(+)$1	1	171	178	13.1830
...((((	chrM:8437-8640(+)$1	1	152	159	13.1126
((((...	chrM:10173-10380(+)$1	1	129	136	13.6760
(.((((.	chrM:7793-8044(+)$1	1	137	144	17.5492
.......	chrM:13398-13610(+)$1	1	21	28	13.7464
(......	chrM:7910-8119(+)$1	1	20	27	17.5492
.......	chr3:25508894-25509134(+)$1	1	122	129	13.3239
.......	chrM:8405-8637(+)$1	1	17	24	14.0985
(((((..	chrM:5324-5599(+)$1	1	30	37	12.9718
).)))).	chrM:9757-9977(+)$1	1	115	122	13.8169
.......	chr5:134262633-134262925(-)$1	1	173	180	14.0985
(.((((.	chrM:7869-8109(+)$1	1	61	68	17.5492
((((...	chrM:10131-10346(+)$1	1	171	178	13.6760
.......	chrM:7783-7989(+)$1	1	147	154	17.5492
)......	chrM:10803-11027(+)$1	1	204	211	13.3239
.......	chrM:13305-13575(+)$1	1	114	121	13.7464
.....((	chrM:15404-15625(+)$1	1	71	78	14.0985
.......	chrM:13589-13808(+)$1	1	97	104	13.5352
((.....	chrM:4778-5019(+)$1	1	135	142	13.5352
((((...	chrM:9835-10043(+)$1	1	37	44	13.8169
(......	chrM:8584-8794(+)$1	1	65	72	17.5492
).)))..	chrM:10146-10373(+)$1	1	156	163	13.6760
.......	chrM:8440-8658(+)$1	1	209	216	17.5492
(......	chrM:7844-8049(+)$1	1	86	93	17.5492
).)))).	chrM:9779-9983(+)$1	1	93	100	13.8169
)......	chrM:10827-11055(+)$1	1	180	187	13.3239
).)))).	chrM:9726-9943(+)$1	1	146	153	13.8169
.......	chrM:10756-10982(+)$1	1	12	19	17.5492
.......	chrM:6535-6761(+)$1	1	124	131	13.3239
.......	chrM:13142-13371(+)$1	1	7	14	17.5492
((((...	chrM:10187-10394(+)$1	1	115	122	13.6760
.......	chrM:10869-11084(+)$1	1	184	191	17.5492
.......	chr16:10816694-10816927(-)$1	1	83	90	14.0985
.......	chrM:12567-12821(+)$1	1	153	160	17.5492
.......	chrM:15590-15813(+)$1	1	62	69	13.3239
(......	chrM:8614-8840(+)$1	1	35	42	17.5492
.......	chrM:13393-13598(+)$1	1	26	33	13.7464
).)))).	chrM:9783-10002(+)$1	1	89	96	13.8169
.......	chrM:12533-12742(+)$1	1	187	194	17.5492
))))...	chrM:7757-7978(+)$1	1	173	180	17.5492
.......	chrM:15458-15708(+)$1	1	17	24	14.0985
..(((((	chr5:134263533-134263776(-)$1	1	58	65	13.3943
((((...	chrM:10209-10429(+)$1	1	93	100	13.6760
.......	chrM:9802-10028(+)$1	1	70	77	13.8169
.......	chrM:9033-9282(+)$1	1	60	67	13.3239
.......	chrM:6799-7050(+)$1	1	183	190	13.1830
.......	chrM:13375-13593(+)$1	1	44	51	13.7464
.....))	chrM:12501-12710(+)$1	1	175	182	13.0422
).)))))	chrM:4318-4544(+)$1	1	148	155	13.3943

#PSSM
A : 0.94	C : 0.04	a : 0.01	
C : 0.90	A : 0.07	c : 0.01	U : 0.01	
U : 0.98	u : 0.01	
A : 0.90	U : 0.04	C : 0.02	G : 0.01	u : 0.01	
A : 0.80	U : 0.12	C : 0.05	a : 0.01	
U : 0.84	C : 0.08	A : 0.05	u : 0.01	
C : 0.84	A : 0.11	U : 0.02	c : 0.01	

#score	1052.8309859154913
#seq	71
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF656IDO_XRCC6_transcript_m1_run1.nuc.txt

#NT
UCUGU	chr1:44736103-44736337(-)$1	234	2	7	15.0000
UCUGU	chr6:30711093-30711367(-)$1	274	204	209	15.0000
UCUGU	chrX:132942321-132942564(-)$1	243	81	86	15.0000
UCUGU	chr21:46289845-46290153(-)$1	308	106	111	15.0000
ucugu	chr16:81525689-81525939(+)$1	250	129	134	15.0000
ucugu	chr11:65206515-65206741(+)$1	226	149	154	15.0000
UCUGU	chr11:65207600-65207846(+)$1	246	124	129	15.0000
uCUGU	chr15:99254245-99254486(+)$1	241	10	15	15.0000
UCUGU	chr6:30258694-30258948(-)$1	254	147	152	15.0000
UCUGU	chr3:185817093-185817303(-)$1	210	37	42	15.0000
ucugu	chr14:31644429-31644694(-)$1	265	247	252	15.0000
ucugu	chr17:7411145-7411393(+)$1	248	21	26	15.0000
UCUGU	chr8:22878691-22878949(-)$1	258	66	71	15.0000
UCUGU	chr10:103606793-103607043(-)$1	250	225	230	15.0000
ucugu	chr16:24747336-24747575(+)$1	239	146	151	15.0000
ucugu	chr7:76218400-76218652(+)$1	252	220	225	15.0000
ucugu	chrX:133053847-133054072(-)$1	225	219	224	15.0000
UCUGU	chr8:121822600-121822852(-)$1	252	69	74	15.0000
UCUGU	chr9:74340819-74341058(-)$1	239	89	94	15.0000
ucugu	chr10:35095661-35095907(-)$1	246	46	51	15.0000
UCUGU	chr21:16404933-16405180(-)$1	247	37	42	15.0000
ucugu	chr7:92284115-92284332(-)$1	217	146	151	15.0000
UCUGU	chr2:97492725-97492975(+)$1	250	37	42	15.0000
UCUGU	chr5:78111190-78111433(-)$1	243	206	211	15.0000
UCUGU	chr16:23653183-23653435(+)$1	252	35	40	15.0000
ucugu	chr11:65206471-65206715(+)$1	244	193	198	15.0000
ucugu	chr2:235869667-235869916(+)$1	249	45	50	15.0000
UCUGU	chr8:22267347-22267629(+)$1	282	90	95	15.0000
ucugu	chr3:171846878-171847121(+)$1	243	171	176	15.0000
ucugu	chr14:34904786-34905015(-)$1	229	156	161	15.0000
ucugu	chr2:101485812-101486064(+)$1	252	46	51	15.0000
UCUGU	chr3:185817056-185817293(-)$1	237	27	32	15.0000
ucugu	chr9:134363483-134363745(+)$1	262	200	205	15.0000
ucugu	chr7:92284077-92284315(-)$1	238	129	134	15.0000
UCUGU	chr6:32941576-32941838(+)$1	262	114	119	15.0000
UCUGU	chr2:42423843-42424116(+)$1	273	122	127	15.0000
UCUGU	chr1:155238210-155238464(-)$1	254	111	116	15.0000
UCUGU	chr2:235907429-235907676(+)$1	247	12	17	15.0000
ucugu	chr14:34904754-34904986(-)$1	232	127	132	15.0000
UCUGU	chr17:73658210-73658484(-)$1	274	143	148	15.0000
UCUGU	chr7:76183145-76183419(+)$1	274	168	173	15.0000
UCUGU	chr3:184036867-184037123(+)$1	256	206	211	15.0000
UCUGU	chr11:65207570-65207800(+)$1	230	154	159	15.0000
UCUGU	chr1:44736137-44736347(-)$1	210	12	17	15.0000
UCUGU	chr20:17941976-17942229(-)$1	253	206	211	15.0000
UCUGU	chr17:15414483-15414761(-)$1	278	75	80	15.0000

#otherMatches

#Struct PSSM
JJJJJ	chr6:159047173-159047424(+)$1	251	226	231	15.0000
:::::	chr1:44736103-44736337(-)$1	234	2	7	15.0000
]bb22	chr6:30711093-30711367(-)$1	274	204	209	15.0000
[bb""	chrX:132942321-132942564(-)$1	243	81	86	15.0000
IIIII	chr21:46289845-46290153(-)$1	308	106	111	15.0000
dd]cc	chr16:81525689-81525939(+)$1	250	129	134	15.0000
22eee	chr11:65206515-65206741(+)$1	226	149	154	15.0000
DD{FF	chr11:65207600-65207846(+)$1	246	124	129	15.0000
:::gg	chr15:99254245-99254486(+)$1	241	10	15	15.0000
44ggg	chr6:30258694-30258948(-)$1	254	147	152	15.0000
EEEEE	chr3:185817093-185817303(-)$1	210	37	42	15.0000
xxxxx	chr14:31644429-31644694(-)$1	265	247	252	15.0000
00000	chr17:7411145-7411393(+)$1	248	21	26	15.0000
fffff	chr8:22878691-22878949(-)$1	258	66	71	15.0000
DDDD}	chr10:103606793-103607043(-)$1	250	225	230	15.0000
ddd]d	chr16:24747336-24747575(+)$1	239	146	151	15.0000
+++cc	chr7:76218400-76218652(+)$1	252	220	225	15.0000
DDD::	chrX:133053847-133054072(-)$1	225	219	224	15.0000
ooocc	chr8:121822600-121822852(-)$1	252	69	74	15.0000
!!ddd	chr9:74340819-74341058(-)$1	239	89	94	15.0000
:ccc[	chr10:35095661-35095907(-)$1	246	46	51	15.0000
"ccc#	chr21:16404933-16405180(-)$1	247	37	42	15.0000
=====	chr7:92284115-92284332(-)$1	217	146	151	15.0000
WFFFF	chr2:97492725-97492975(+)$1	250	37	42	15.0000
ddppp	chr5:78111190-78111433(-)$1	243	206	211	15.0000
:::::	chr16:23653183-23653435(+)$1	252	35	40	15.0000
"""a[	chr11:65206471-65206715(+)$1	244	193	198	15.0000
eeecc	chr2:235869667-235869916(+)$1	249	45	50	15.0000
fffff	chr8:22267347-22267629(+)$1	282	90	95	15.0000
ddddq	chr3:171846878-171847121(+)$1	243	171	176	15.0000
ggggg	chr14:34904786-34905015(-)$1	229	156	161	15.0000
EEE::	chr2:101485812-101486064(+)$1	252	46	51	15.0000
:::EE	chr3:185817056-185817293(-)$1	237	27	32	15.0000
ggggg	chr9:134363483-134363745(+)$1	262	200	205	15.0000
hhhhl	chr7:92284077-92284315(-)$1	238	129	134	15.0000
ooooo	chr6:32941576-32941838(+)$1	262	114	119	15.0000
!eeee	chr2:42423843-42424116(+)$1	273	122	127	15.0000
ppppp	chr1:155238210-155238464(-)$1	254	111	116	15.0000
eeepp	chr2:235907429-235907676(+)$1	247	12	17	15.0000
ggggg	chr14:34904754-34904986(-)$1	232	127	132	15.0000
nccc2	chr17:73658210-73658484(-)$1	274	143	148	15.0000
IIIII	chr7:76183145-76183419(+)$1	274	168	173	15.0000
iiiii	chr3:184036867-184037123(+)$1	256	206	211	15.0000
:ccc[	chr11:65207570-65207800(+)$1	230	154	159	15.0000
[dddd	chr1:44736137-44736347(-)$1	210	12	17	15.0000
JJJJJ	chr20:17941976-17942229(-)$1	253	206	211	15.0000
fffff	chr17:15414483-15414761(-)$1	278	75	80	15.0000

#DB
)))))	chr6:159047173-159047424(+)$1	1	226	231	15.0000
.....	chr1:44736103-44736337(-)$1	1	2	7	15.0000
.))..	chr6:30711093-30711367(-)$1	1	204	209	15.0000
.((..	chrX:132942321-132942564(-)$1	1	81	86	15.0000
(((((	chr21:46289845-46290153(-)$1	1	106	111	15.0000
)).))	chr16:81525689-81525939(+)$1	1	129	134	15.0000
..)))	chr11:65206515-65206741(+)$1	1	149	154	15.0000
((.((	chr11:65207600-65207846(+)$1	1	124	129	15.0000
...((	chr15:99254245-99254486(+)$1	1	10	15	15.0000
..)))	chr6:30258694-30258948(-)$1	1	147	152	15.0000
(((((	chr3:185817093-185817303(-)$1	1	37	42	15.0000
.....	chr14:31644429-31644694(-)$1	1	247	252	15.0000
.....	chr17:7411145-7411393(+)$1	1	21	26	15.0000
(((((	chr8:22878691-22878949(-)$1	1	66	71	15.0000
)))).	chr10:103606793-103607043(-)$1	1	225	230	15.0000
))).)	chr16:24747336-24747575(+)$1	1	146	151	15.0000
...((	chr7:76218400-76218652(+)$1	1	220	225	15.0000
)))..	chrX:133053847-133054072(-)$1	1	219	224	15.0000
...))	chr8:121822600-121822852(-)$1	1	69	74	15.0000
..(((	chr9:74340819-74341058(-)$1	1	89	94	15.0000
.(((.	chr10:35095661-35095907(-)$1	1	46	51	15.0000
.(((.	chr21:16404933-16405180(-)$1	1	37	42	15.0000
)))))	chr7:92284115-92284332(-)$1	1	146	151	15.0000
.((((	chr2:97492725-97492975(+)$1	1	37	42	15.0000
((...	chr5:78111190-78111433(-)$1	1	206	211	15.0000
.....	chr16:23653183-23653435(+)$1	1	35	40	15.0000
...(.	chr11:65206471-65206715(+)$1	1	193	198	15.0000
(((((	chr2:235869667-235869916(+)$1	1	45	50	15.0000
)))))	chr8:22267347-22267629(+)$1	1	90	95	15.0000
((((.	chr3:171846878-171847121(+)$1	1	171	176	15.0000
)))))	chr14:34904786-34905015(-)$1	1	156	161	15.0000
(((..	chr2:101485812-101486064(+)$1	1	46	51	15.0000
...((	chr3:185817056-185817293(-)$1	1	27	32	15.0000
)))))	chr9:134363483-134363745(+)$1	1	200	205	15.0000
((((.	chr7:92284077-92284315(-)$1	1	129	134	15.0000
.....	chr6:32941576-32941838(+)$1	1	114	119	15.0000
.((((	chr2:42423843-42424116(+)$1	1	122	127	15.0000
.....	chr1:155238210-155238464(-)$1	1	111	116	15.0000
(((..	chr2:235907429-235907676(+)$1	1	12	17	15.0000
)))))	chr14:34904754-34904986(-)$1	1	127	132	15.0000
.))).	chr17:73658210-73658484(-)$1	1	143	148	15.0000
)))))	chr7:76183145-76183419(+)$1	1	168	173	15.0000
)))))	chr3:184036867-184037123(+)$1	1	206	211	15.0000
.(((.	chr11:65207570-65207800(+)$1	1	154	159	15.0000
.((((	chr1:44736137-44736347(-)$1	1	12	17	15.0000
)))))	chr20:17941976-17942229(-)$1	1	206	211	15.0000
(((((	chr17:15414483-15414761(-)$1	1	75	80	15.0000

#PSSM
U : 0.61	u : 0.38	
C : 0.63	c : 0.36	
U : 0.63	u : 0.36	
G : 0.63	g : 0.36	
U : 0.63	u : 0.36	

#score	705.0
#seq	47
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_UTR_m1_run2.nuc.txt

#NT
CUUU	chr1:27180852-27181109(+)$1	257	8	12	12.0000
CUUU	chrX:14938665-14938911(+)$1	246	66	70	12.0000
CUUU	chr19:2039194-2039440(-)$1	246	36	40	12.0000
CUUU	chr19:42752029-42752413(-)$1	384	107	111	12.0000
CUUU	chr3:194998648-194998920(-)$1	272	53	57	12.0000
CUUU	chr7:150779627-150779879(-)$1	252	183	187	12.0000
CUUU	chr22:18210934-18211185(+)$1	251	136	140	12.0000
CUUU	chr7:135612872-135613097(-)$1	225	73	77	12.0000
CUUU	chr20:33097388-33097701(+)$1	313	102	106	12.0000
CUUU	chr17:73315785-73316001(-)$1	216	31	35	12.0000
CUUU	chr7:137561762-137562029(-)$1	267	49	53	12.0000
CUUU	chr7:99632554-99632797(+)$1	243	63	67	12.0000
CUUU	chr17:46148193-46148454(-)$1	261	231	235	12.0000
CUUU	chr4:39289148-39289400(-)$1	252	191	195	12.0000
CUUU	chr3:196558020-196558260(+)$1	240	59	63	12.0000
CUUU	chr1:28929532-28929820(-)$1	288	67	71	12.0000
CUUU	chr14:75369698-75370033(+)$1	335	95	99	12.0000
cuuu	chr11:105968340-105968588(+)$1	248	12	16	12.0000
CUUU	chr1:179041927-179042195(+)$1	268	88	92	12.0000
CUUU	chr1:16723452-16723705(+)$1	253	7	11	12.0000
CUUU	chr17:42755391-42755643(-)$1	252	18	22	12.0000
CUUU	chr5:96369401-96369658(+)$1	257	36	40	12.0000
CUUU	chr16:68261963-68262249(+)$1	286	70	74	12.0000
CUUU	chr16:29678121-29678371(+)$1	250	8	12	12.0000
CUUU	chr19:44126656-44127009(-)$1	353	45	49	12.0000
CUUU	chr1:156712930-156713207(-)$1	277	59	63	12.0000
CUUU	chr8:57873094-57873324(-)$1	230	10	14	12.0000
CUUU	chrX:64959946-64960250(+)$1	304	26	30	12.0000
CUUU	chr6:108532789-108533048(-)$1	259	65	69	12.0000
CUUU	chr5:154194158-154194379(+)$1	221	159	163	12.0000
CUUU	chr12:53806193-53806444(+)$1	251	51	55	12.0000
CUUU	chr1:29443890-29444127(+)$1	237	4	8	12.0000
CUUU	chr6:35542530-35542764(-)$1	234	50	54	12.0000
CUUU	chr17:73315223-73315473(-)$1	250	24	28	12.0000
CUUU	chr4:129191820-129192064(-)$1	244	128	132	12.0000
CUUU	chr5:154194096-154194345(+)$1	249	221	225	12.0000
CUUU	chr12:124498128-124498371(+)$1	243	8	12	12.0000
CUUU	chr2:27844752-27845088(+)$1	336	89	93	12.0000
CUUU	chr7:128410771-128411025(+)$1	254	0	4	12.0000
CUUU	chr1:151669766-151670036(+)$1	270	114	118	12.0000
CUUU	chr5:96108700-96108982(+)$1	282	86	90	12.0000
CUUU	chr6:34256144-34256442(-)$1	298	10	14	12.0000
CUUU	chr10:30601552-30601832(-)$1	280	107	111	12.0000
CUUU	chr11:95502658-95502909(-)$1	251	63	67	12.0000
CUUU	chr4:77955670-77955897(+)$1	227	31	35	12.0000
CUUU	chr12:56365639-56365906(+)$1	267	200	204	12.0000
CUUU	chr9:128126229-128126538(+)$1	309	108	112	12.0000
CUUU	chr1:160184961-160185235(+)$1	274	31	35	12.0000
CUUU	chr17:44833391-44833668(+)$1	277	196	200	12.0000
CUUU	chr9:136229309-136229515(-)$1	206	78	82	12.0000
CUUU	chr10:61551509-61551812(-)$1	303	1	5	12.0000
CUUU	chr1:224576011-224576273(-)$1	262	21	25	12.0000
CUUU	chr11:64893854-64894135(+)$1	281	73	77	12.0000
cuuu	chr2:30480565-30480829(+)$1	264	75	79	12.0000
cuuu	chr5:10279681-10279925(-)$1	244	10	14	12.0000
CUUU	chr17:73315905-73316211(-)$1	306	5	9	12.0000
CUUU	chr2:121051606-121051854(+)$1	248	22	26	12.0000
CUUU	chr10:102122992-102123249(+)$1	257	62	66	12.0000
CUUU	chr3:40531318-40531652(+)$1	334	26	30	12.0000
CUUU	chr14:67852362-67852601(+)$1	239	5	9	12.0000
CUUU	chr4:71851690-71851942(+)$1	252	58	62	12.0000
CUUU	chr6:36076478-36076699(+)$1	221	10	14	12.0000
CUUU	chr7:140425271-140425574(-)$1	303	24	28	12.0000
CUUU	chr12:56632908-56633145(-)$1	237	75	79	12.0000
CUUU	chr11:118915470-118915753(-)$1	283	5	9	12.0000
CUUU	chr12:49085953-49086240(-)$1	287	38	42	12.0000
CUUU	chr5:177022621-177022882(+)$1	261	150	154	12.0000
CUUU	chr8:103217075-103217357(-)$1	282	91	95	12.0000
CUUU	chr11:62393086-62393329(-)$1	243	101	105	12.0000
CUUU	chr1:156109601-156109847(+)$1	246	29	33	12.0000
CUUU	chr19:42751647-42751911(-)$1	264	176	180	12.0000
CUUU	chr14:93694241-93694585(+)$1	344	293	297	12.0000
CUUU	chr10:102120845-102121116(+)$1	271	13	17	12.0000
CUUU	chr8:37636550-37636811(+)$1	261	1	5	12.0000
CUUU	chr1:115315516-115315758(-)$1	242	154	158	12.0000
CUUU	chr12:50156974-50157223(+)$1	249	23	27	12.0000
CUUU	chr15:52202104-52202381(+)$1	277	13	17	12.0000
CUUU	chr7:26252691-26252956(+)$1	265	74	78	12.0000
CUUU	chr5:95130771-95131034(+)$1	263	160	164	12.0000
CUUU	chr18:10551517-10551737(+)$1	220	121	125	12.0000
CUUU	chr11:63677024-63677251(+)$1	227	57	61	12.0000
CUUU	chr12:56665846-56666080(-)$1	234	84	88	12.0000
CUUU	chr1:54692138-54692431(-)$1	293	66	70	12.0000
CUUU	chr21:15744900-15745144(-)$1	244	43	47	12.0000
CUUU	chr8:57874508-57874754(-)$1	246	29	33	12.0000

#otherMatches

#Struct PSSM
f:::	chrX:13731789-13732040(-)$1	251	95	99	12.0000
iiii	chr1:27180852-27181109(+)$1	257	8	12	12.0000
ccc:	chrX:14938665-14938911(+)$1	246	66	70	12.0000
::::	chr19:2039194-2039440(-)$1	246	36	40	12.0000
emmm	chr19:42752029-42752413(-)$1	384	107	111	12.0000
ggg[	chr3:194998648-194998920(-)$1	272	53	57	12.0000
}CCC	chr7:150779627-150779879(-)$1	252	183	187	12.0000
4444	chr22:18210934-18211185(+)$1	251	136	140	12.0000
avvv	chr7:135612872-135613097(-)$1	225	73	77	12.0000
gqqq	chr20:33097388-33097701(+)$1	313	102	106	12.0000
D:::	chr17:73315785-73316001(-)$1	216	31	35	12.0000
{FFF	chr7:137561762-137562029(-)$1	267	49	53	12.0000
IIII	chr7:99632554-99632797(+)$1	243	63	67	12.0000
g000	chr17:46148193-46148454(-)$1	261	231	235	12.0000
::::	chr4:39289148-39289400(-)$1	252	191	195	12.0000
::::	chr3:196558020-196558260(+)$1	240	59	63	12.0000
iiii	chr1:28929532-28929820(-)$1	288	67	71	12.0000
GGGG	chr14:75369698-75370033(+)$1	335	95	99	12.0000
mmm=	chr11:105968340-105968588(+)$1	248	12	16	12.0000
cccf	chr1:179041927-179042195(+)$1	268	88	92	12.0000
mmmm	chr1:16723452-16723705(+)$1	253	7	11	12.0000
gggg	chr17:42755391-42755643(-)$1	252	18	22	12.0000
gggg	chr5:96369401-96369658(+)$1	257	36	40	12.0000
:ggg	chr16:68261963-68262249(+)$1	286	70	74	12.0000
EEEE	chr16:29678121-29678371(+)$1	250	8	12	12.0000
annn	chr19:44126656-44127009(-)$1	353	45	49	12.0000
nnff	chr1:156712930-156713207(-)$1	277	59	63	12.0000
dddd	chr8:57873094-57873324(-)$1	230	10	14	12.0000
yyyy	chrX:64959946-64960250(+)$1	304	26	30	12.0000
NFFF	chr6:108532789-108533048(-)$1	259	65	69	12.0000
eeee	chr5:154194158-154194379(+)$1	221	159	163	12.0000
gggg	chr12:53806193-53806444(+)$1	251	51	55	12.0000
::::	chr1:29443890-29444127(+)$1	237	4	8	12.0000
ccc!	chr6:35542530-35542764(-)$1	234	50	54	12.0000
::::	chr17:73315223-73315473(-)$1	250	24	28	12.0000
::::	chr4:129191820-129192064(-)$1	244	128	132	12.0000
eeee	chr5:154194096-154194345(+)$1	249	221	225	12.0000
::::	chr12:124498128-124498371(+)$1	243	8	12	12.0000
ff[c	chr2:27844752-27845088(+)$1	336	89	93	12.0000
::::	chr7:128410771-128411025(+)$1	254	0	4	12.0000
qqqq	chr1:151669766-151670036(+)$1	270	114	118	12.0000
::::	chr5:96108700-96108982(+)$1	282	86	90	12.0000
DDDD	chr6:34256144-34256442(-)$1	298	10	14	12.0000
dmmm	chr10:30601552-30601832(-)$1	280	107	111	12.0000
[ddd	chr11:95502658-95502909(-)$1	251	63	67	12.0000
dmmm	chr4:77955670-77955897(+)$1	227	31	35	12.0000
bbmm	chr12:56365639-56365906(+)$1	267	200	204	12.0000
::::	chr9:128126229-128126538(+)$1	309	108	112	12.0000
hhhh	chr1:160184961-160185235(+)$1	274	31	35	12.0000
dd55	chr17:44833391-44833668(+)$1	277	196	200	12.0000
6666	chr9:136229309-136229515(-)$1	206	78	82	12.0000
::::	chr10:61551509-61551812(-)$1	303	1	5	12.0000
pppc	chr1:224576011-224576273(-)$1	262	21	25	12.0000
JJJJ	chr11:64893854-64894135(+)$1	281	73	77	12.0000
ccc:	chr2:30480565-30480829(+)$1	264	75	79	12.0000
MMME	chr5:10279681-10279925(-)$1	244	10	14	12.0000
AKKJ	chr17:73315905-73316211(-)$1	306	5	9	12.0000
MMBB	chr2:121051606-121051854(+)$1	248	22	26	12.0000
FFFF	chr10:102122992-102123249(+)$1	257	62	66	12.0000
"""e	chr3:40531318-40531652(+)$1	334	26	30	12.0000
::::	chr14:67852362-67852601(+)$1	239	5	9	12.0000
JJJJ	chr4:71851690-71851942(+)$1	252	58	62	12.0000
F:::	chr6:36076478-36076699(+)$1	221	10	14	12.0000
cccc	chr7:140425271-140425574(-)$1	303	24	28	12.0000
bddd	chr12:56632908-56633145(-)$1	237	75	79	12.0000
::::	chr11:118915470-118915753(-)$1	283	5	9	12.0000
ddd#	chr12:49085953-49086240(-)$1	287	38	42	12.0000
HHHH	chr5:177022621-177022882(+)$1	261	150	154	12.0000
teee	chr8:103217075-103217357(-)$1	282	91	95	12.0000
ffff	chr11:62393086-62393329(-)$1	243	101	105	12.0000
f$$$	chr1:156109601-156109847(+)$1	246	29	33	12.0000
mmcc	chr19:42751647-42751911(-)$1	264	176	180	12.0000
ffff	chr14:93694241-93694585(+)$1	344	293	297	12.0000
SSSS	chr10:102120845-102121116(+)$1	271	13	17	12.0000
:ggg	chr8:37636550-37636811(+)$1	261	1	5	12.0000
hh33	chr1:115315516-115315758(-)$1	242	154	158	12.0000
GGGG	chr12:50156974-50157223(+)$1	249	23	27	12.0000
LLLG	chr15:52202104-52202381(+)$1	277	13	17	12.0000
eee3	chr7:26252691-26252956(+)$1	265	74	78	12.0000
c22b	chr5:95130771-95131034(+)$1	263	160	164	12.0000
pppp	chr18:10551517-10551737(+)$1	220	121	125	12.0000
====	chr11:63677024-63677251(+)$1	227	57	61	12.0000
:::g	chr12:56665846-56666080(-)$1	234	84	88	12.0000
DDHH	chr1:54692138-54692431(-)$1	293	66	70	12.0000
Heee	chr21:15744900-15745144(-)$1	244	43	47	12.0000
hhhh	chr8:57874508-57874754(-)$1	246	29	33	12.0000

#DB
)...	chrX:13731789-13732040(-)$1	1	95	99	12.0000
((((	chr1:27180852-27181109(+)$1	1	8	12	12.0000
))).	chrX:14938665-14938911(+)$1	1	66	70	12.0000
....	chr19:2039194-2039440(-)$1	1	36	40	12.0000
(...	chr19:42752029-42752413(-)$1	1	107	111	12.0000
(((.	chr3:194998648-194998920(-)$1	1	53	57	12.0000
.)))	chr7:150779627-150779879(-)$1	1	183	187	12.0000
....	chr22:18210934-18211185(+)$1	1	136	140	12.0000
(...	chr7:135612872-135613097(-)$1	1	73	77	12.0000
(...	chr20:33097388-33097701(+)$1	1	102	106	12.0000
(...	chr17:73315785-73316001(-)$1	1	31	35	12.0000
.(((	chr7:137561762-137562029(-)$1	1	49	53	12.0000
((((	chr7:99632554-99632797(+)$1	1	63	67	12.0000
)...	chr17:46148193-46148454(-)$1	1	231	235	12.0000
....	chr4:39289148-39289400(-)$1	1	191	195	12.0000
....	chr3:196558020-196558260(+)$1	1	59	63	12.0000
))))	chr1:28929532-28929820(-)$1	1	67	71	12.0000
((((	chr14:75369698-75370033(+)$1	1	95	99	12.0000
...)	chr11:105968340-105968588(+)$1	1	12	16	12.0000
))))	chr1:179041927-179042195(+)$1	1	88	92	12.0000
....	chr1:16723452-16723705(+)$1	1	7	11	12.0000
((((	chr17:42755391-42755643(-)$1	1	18	22	12.0000
))))	chr5:96369401-96369658(+)$1	1	36	40	12.0000
.(((	chr16:68261963-68262249(+)$1	1	70	74	12.0000
((((	chr16:29678121-29678371(+)$1	1	8	12	12.0000
(...	chr19:44126656-44127009(-)$1	1	45	49	12.0000
..))	chr1:156712930-156713207(-)$1	1	59	63	12.0000
))))	chr8:57873094-57873324(-)$1	1	10	14	12.0000
....	chrX:64959946-64960250(+)$1	1	26	30	12.0000
.(((	chr6:108532789-108533048(-)$1	1	65	69	12.0000
))))	chr5:154194158-154194379(+)$1	1	159	163	12.0000
))))	chr12:53806193-53806444(+)$1	1	51	55	12.0000
....	chr1:29443890-29444127(+)$1	1	4	8	12.0000
(((.	chr6:35542530-35542764(-)$1	1	50	54	12.0000
....	chr17:73315223-73315473(-)$1	1	24	28	12.0000
....	chr4:129191820-129192064(-)$1	1	128	132	12.0000
))))	chr5:154194096-154194345(+)$1	1	221	225	12.0000
....	chr12:124498128-124498371(+)$1	1	8	12	12.0000
((.(	chr2:27844752-27845088(+)$1	1	89	93	12.0000
....	chr7:128410771-128411025(+)$1	1	0	4	12.0000
....	chr1:151669766-151670036(+)$1	1	114	118	12.0000
....	chr5:96108700-96108982(+)$1	1	86	90	12.0000
((((	chr6:34256144-34256442(-)$1	1	10	14	12.0000
(...	chr10:30601552-30601832(-)$1	1	107	111	12.0000
.(((	chr11:95502658-95502909(-)$1	1	63	67	12.0000
(...	chr4:77955670-77955897(+)$1	1	31	35	12.0000
((..	chr12:56365639-56365906(+)$1	1	200	204	12.0000
....	chr9:128126229-128126538(+)$1	1	108	112	12.0000
))))	chr1:160184961-160185235(+)$1	1	31	35	12.0000
))..	chr17:44833391-44833668(+)$1	1	196	200	12.0000
....	chr9:136229309-136229515(-)$1	1	78	82	12.0000
....	chr10:61551509-61551812(-)$1	1	1	5	12.0000
...)	chr1:224576011-224576273(-)$1	1	21	25	12.0000
((((	chr11:64893854-64894135(+)$1	1	73	77	12.0000
))).	chr2:30480565-30480829(+)$1	1	75	79	12.0000
...(	chr5:10279681-10279925(-)$1	1	10	14	12.0000
(..(	chr17:73315905-73316211(-)$1	1	5	9	12.0000
..((	chr2:121051606-121051854(+)$1	1	22	26	12.0000
((((	chr10:102122992-102123249(+)$1	1	62	66	12.0000
...(	chr3:40531318-40531652(+)$1	1	26	30	12.0000
....	chr14:67852362-67852601(+)$1	1	5	9	12.0000
((((	chr4:71851690-71851942(+)$1	1	58	62	12.0000
(...	chr6:36076478-36076699(+)$1	1	10	14	12.0000
((((	chr7:140425271-140425574(-)$1	1	24	28	12.0000
)(((	chr12:56632908-56633145(-)$1	1	75	79	12.0000
....	chr11:118915470-118915753(-)$1	1	5	9	12.0000
(((.	chr12:49085953-49086240(-)$1	1	38	42	12.0000
))))	chr5:177022621-177022882(+)$1	1	150	154	12.0000
.)))	chr8:103217075-103217357(-)$1	1	91	95	12.0000
))))	chr11:62393086-62393329(-)$1	1	101	105	12.0000
(...	chr1:156109601-156109847(+)$1	1	29	33	12.0000
..))	chr19:42751647-42751911(-)$1	1	176	180	12.0000
((((	chr14:93694241-93694585(+)$1	1	293	297	12.0000
....	chr10:102120845-102121116(+)$1	1	13	17	12.0000
.(((	chr8:37636550-37636811(+)$1	1	1	5	12.0000
))..	chr1:115315516-115315758(-)$1	1	154	158	12.0000
((((	chr12:50156974-50157223(+)$1	1	23	27	12.0000
...(	chr15:52202104-52202381(+)$1	1	13	17	12.0000
))).	chr7:26252691-26252956(+)$1	1	74	78	12.0000
)..)	chr5:95130771-95131034(+)$1	1	160	164	12.0000
....	chr18:10551517-10551737(+)$1	1	121	125	12.0000
((((	chr11:63677024-63677251(+)$1	1	57	61	12.0000
...(	chr12:56665846-56666080(-)$1	1	84	88	12.0000
((((	chr1:54692138-54692431(-)$1	1	66	70	12.0000
((((	chr21:15744900-15745144(-)$1	1	43	47	12.0000
))))	chr8:57874508-57874754(-)$1	1	29	33	12.0000

#PSSM
C : 0.96	c : 0.03	
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_CDS_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
{A{CCCKKGGGGGGG{A:::ddddllldddd::cccbb[iiiiiiiiiddddllldddd55555iiiiiiiii]bb]ccc::::FFFFFF::ccc[bbccc[annnnna]ccc]bb]ccc:::dddd"""hhhhhhhh[eeeee[ddddddddeeeeeggggggg####dddd!!hhhhhhhh[ffffff[bbffffff[bbvvvvvvvvvvvvvbb22ffffff]bb]ffffffhhhhhhhh22dddd4444ggggggg4444eeeee4444dddd]ddddeeeeehhhhhhhh]ddddcccnnnnnccc:::::::::FFFFFF@@@@@@@@@	chr8:144940390-144940802(-)$1	412	4	339	1005.0000

#DB
.(.(((..(((((((.(...((((...))))..(((((.(((((((((((((...)))).....))))))))).)).)))....((((((..(((.(((((.(.....).))).)).)))...((((...((((((((.(((((.((((((((((((((((((((....((((..((((((((.((((((.((((((((.((.............))..)))))).)).))))))))))))))..))))....)))))))....)))))....)))).))))))))))))))))).))))(((.....))).........)))))).........	chr8:144940390-144940802(-)$1	1	4	339	1005.0000

#PSSM
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	

#score	1005.0
#seq	1
#width	335
#escape	false
#onStep	716
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_transcript_m3_run2.nuc.txt

#NT
GUGGGCAGCGGGG	chr2:242707715-242707993(+)$1	278	65	78	18.7826
GGGAGCGGCUGGG	chr3:122785850-122786164(+)$1	314	48	61	16.8260
cggcgccgcgggg	chr17:40427903-40428212(-)$1	309	187	200	16.8260
CGGUGGUGCUGGG	chr19:5094562-5094870(+)$1	308	121	134	14.7608
UGGGGCGUGGGGG	chr2:97559992-97560202(-)$1	210	165	178	14.6521
AGGGGGGGCGGGG	chr19:41119407-41119682(+)$1	275	181	194	19.2173
gggggcggcgggg	chr4:129208546-129208811(-)$1	265	89	102	23.1304
UGUGGCUGUGGGG	chr4:39700108-39700388(+)$1	280	212	225	16.3913
GGCGGCUGCAGAG	chr6:30688718-30688952(+)$1	234	46	59	13.8913
gggggcggcgggg	chr17:79885208-79885443(-)$1	235	87	100	23.1304
UGGGGCUGGUGGG	chr20:60624114-60624361(-)$1	247	161	174	17.8043
CCGGGCUUCGGGG	chr1:249151583-249151913(-)$1	330	298	311	15.9565
AGGGGCUGCUGGG	chr22:50032325-50032575(-)$1	250	81	94	20.6304
CGGGGCAGAGGGA	chr11:71936594-71936871(+)$1	277	8	21	13.2391
CGGUGCGGCGGGG	chr15:52970972-52971240(-)$1	268	214	227	18.1304
ugggggugagugg	chr20:31140881-31141220(-)$1	339	89	102	12.9130
AGAGGCUGCGGGG	chr19:56203660-56203967(+)$1	307	165	178	19.4347
CGGGGGUGCUGAG	chr19:4058717-4058988(-)$1	271	59	72	15.1956
ggcgGGGGCGGGG	chr1:231167936-231168221(-)$1	285	91	104	17.0434
uggggguggggag	chr16:18153335-18153637(-)$1	302	101	114	13.8913
GGGGGGCGCGGGG	chr14:64970730-64971045(+)$1	315	250	263	19.4347
uggggaugcuggg	chr19:518498-518790(+)$1	292	88	101	17.4782
GAGGGGGGUGGGG	chr16:89660531-89660813(+)$1	282	70	83	14.2173
GGAGUCUGUGGGG	chr12:132402895-132403127(+)$1	232	71	84	13.4565
cggggcugcgggg	chr1:228290359-228290603(-)$1	244	101	114	23.4565
UAAGGCUGCUggg	chr3:47459890-47460188(-)$1	298	45	58	13.9999
gcgggcggcgugg	chr4:52709570-52709814(+)$1	244	27	40	15.3043
CGGGACGGCUGGG	chr19:1104259-1104535(+)$1	276	211	224	15.7391
GUGGGGUGCUGGG	chr19:1585240-1585521(-)$1	281	86	99	16.3913
AGAGGCUUCGGGG	chr9:126030123-126030405(-)$1	282	91	104	15.3043
AGGGGCUGUGGAG	chr12:76477651-76477910(-)$1	259	65	78	16.0652
GGGGGAGGCGGGG	chr8:145026810-145027067(-)$1	257	98	111	19.7608
AGGGGCAGUGCGG	chr4:103748267-103748560(-)$1	293	41	54	13.0217
cggggcggccgcg	chr4:1873658-1873915(+)$1	257	77	90	14.8695
CGUGGCUGAGGGG	chr16:88954350-88954659(-)$1	309	29	42	16.6086
GGGGGCAGCGGUG	chr21:9909273-9909574(-)$1	301	29	42	18.0217
CUGGGCUCCGGGG	chr22:47556102-47556350(+)$1	248	61	74	15.8478
GGGGGCUCCGGAG	chr2:234762716-234763017(-)$1	301	147	160	16.3913
ggugccggcgggg	chr8:128749837-128750158(+)$1	321	138	151	15.0869
GCGGGCUGCGGGG	chr16:447344-447611(+)$1	267	85	98	20.9565
GGGCGCAGCUGGG	chr1:21995450-21995722(-)$1	272	132	145	15.8478
UGGGGGUGCUGGG	chr1:27916739-27917008(-)$1	269	98	111	18.4565
GAAGGCUGGGGGG	chr12:114200654-114200926(-)$1	272	235	248	14.4347
ggggagggcgggg	chr21:47565489-47565739(-)$1	250	48	61	16.3913
GCGAGCUGCAGGG	chr7:1482316-1482579(-)$1	263	231	244	13.7826

#otherMatches

#Struct PSSM
clllccc4444bb	chr4:1348023-1348377(+)$1	354	122	135	13.9999
[bb[cccbbnnnn	chr2:242707715-242707993(+)$1	278	65	78	18.7826
JJJJJJJeeeee#	chr3:122785850-122786164(+)$1	314	48	61	16.8260
d:ddddeeeeeee	chr17:40427903-40428212(-)$1	309	187	200	16.8260
ddeeeee[cccbb	chr19:5094562-5094870(+)$1	308	121	134	14.7608
ppa]ccc22a]cc	chr2:97559992-97560202(-)$1	210	165	178	14.6521
DDD~~~~FFFFFF	chr19:41119407-41119682(+)$1	275	181	194	19.2173
dd]dddd]ggggg	chr4:129208546-129208811(-)$1	265	89	102	23.1304
ooiiiiiiiiiBB	chr4:39700108-39700388(+)$1	280	212	225	16.3913
cccccc[ccc!!a	chr6:30688718-30688952(+)$1	234	46	59	13.8913
ee:CCC{BBEEEE	chr17:79885208-79885443(-)$1	235	87	100	23.1304
pppeeeee]ccc:	chr20:60624114-60624361(-)$1	247	161	174	17.8043
dddnnnnndddd]	chr1:249151583-249151913(-)$1	330	298	311	15.9565
BB:dddd[bb!!d	chr22:50032325-50032575(-)$1	250	81	94	20.6304
GGGG:::dddd[e	chr11:71936594-71936871(+)$1	277	8	21	13.2391
g:bb[bb[bb[dd	chr15:52970972-52971240(-)$1	268	214	227	18.1304
:a[dddd!!ccc[	chr20:31140881-31141220(-)$1	339	89	102	12.9130
333dddd]ccc44	chr19:56203660-56203967(+)$1	307	165	178	19.4347
]a]bb]ddddfff	chr19:4058717-4058988(-)$1	271	59	72	15.1956
[bbmmmmbb]bb]	chr1:231167936-231168221(-)$1	285	91	104	17.0434
KIIIIIIIII:dd	chr16:18153335-18153637(-)$1	302	101	114	13.8913
fff!!bb[cccll	chr14:64970730-64971045(+)$1	315	250	263	19.4347
b]bb::a[bb[a[	chr19:518498-518790(+)$1	292	88	101	17.4782
eee333a]bbiii	chr16:89660531-89660813(+)$1	282	70	83	14.2173
cc[bb!!gggggg	chr12:132402895-132403127(+)$1	232	71	84	13.4565
a"""hhhhhhhh!	chr1:228290359-228290603(-)$1	244	101	114	23.4565
c::GGGGGGGKKD	chr3:47459890-47460188(-)$1	298	45	58	13.9999
dd333dddd]a]c	chr4:52709570-52709814(+)$1	244	27	40	15.3043
d[bbmmmmbb]dd	chr19:1104259-1104535(+)$1	276	211	224	15.7391
[cccmmmmccc]b	chr19:1585240-1585521(-)$1	281	86	99	16.3913
:::DDDD{HHHHH	chr9:126030123-126030405(-)$1	282	91	104	15.3043
3a]cccGGGGGGG	chr12:76477651-76477910(-)$1	259	65	78	16.0652
eeeee[a[hhhhh	chr8:145026810-145027067(-)$1	257	98	111	19.7608
A{A{BB{DDDD{A	chr4:103748267-103748560(-)$1	293	41	54	13.0217
]===========:	chr4:1873658-1873915(+)$1	257	77	90	14.8695
dddddddmmmmdd	chr16:88954350-88954659(-)$1	309	29	42	16.6086
JJJJJJJJJNNNN	chr21:9909273-9909574(-)$1	301	29	42	18.0217
dddFFFFFFeeee	chr22:47556102-47556350(+)$1	248	61	74	15.8478
lllggggggg:::	chr2:234762716-234763017(-)$1	301	147	160	16.3913
EEEEE{EEEEE::	chr8:128749837-128750158(+)$1	321	138	151	15.0869
mmmmccc]ggggg	chr16:447344-447611(+)$1	267	85	98	20.9565
b[ccc[ccclllc	chr1:21995450-21995722(-)$1	272	132	145	15.8478
JJJJKKBB{EEEE	chr1:27916739-27917008(-)$1	269	98	111	18.4565
oobb]bb]cccII	chr12:114200654-114200926(-)$1	272	235	248	14.4347
EEEMMMMGGGGGG	chr21:47565489-47565739(-)$1	250	48	61	16.3913
]bb22ccc22a]f	chr7:1482316-1482579(-)$1	263	231	244	13.7826

#DB
(...)))....))	chr4:1348023-1348377(+)$1	1	122	135	13.9999
.((.(((((....	chr2:242707715-242707993(+)$1	1	65	78	18.7826
((((((((((((.	chr3:122785850-122786164(+)$1	1	48	61	16.8260
).(((((((((((	chr17:40427903-40428212(-)$1	1	187	200	16.8260
(((((((.(((((	chr19:5094562-5094870(+)$1	1	121	134	14.7608
..).)))..).))	chr2:97559992-97560202(-)$1	1	165	178	14.6521
)))....))))))	chr19:41119407-41119682(+)$1	1	181	194	19.2173
)).)))).)))))	chr4:129208546-129208811(-)$1	1	89	102	23.1304
..)))))))))))	chr4:39700108-39700388(+)$1	1	212	225	16.3913
)))(((.(((..(	chr6:30688718-30688952(+)$1	1	46	59	13.8913
)).(((.((((((	chr17:79885208-79885443(-)$1	1	87	100	23.1304
...))))).))).	chr20:60624114-60624361(-)$1	1	161	174	17.8043
(((.....)))).	chr1:249151583-249151913(-)$1	1	298	311	15.9565
((.((((.((..(	chr22:50032325-50032575(-)$1	1	81	94	20.6304
((((...((((.(	chr11:71936594-71936871(+)$1	1	8	21	13.2391
).((.((.((.((	chr15:52970972-52971240(-)$1	1	214	227	18.1304
.(.((((..(((.	chr20:31140881-31141220(-)$1	1	89	102	12.9130
...)))).)))..	chr19:56203660-56203967(+)$1	1	165	178	19.4347
.).)).)))))))	chr19:4058717-4058988(-)$1	1	59	72	15.1956
.((....)).)).	chr1:231167936-231168221(-)$1	1	91	104	17.0434
.(((((((((.((	chr16:18153335-18153637(-)$1	1	101	114	13.8913
(((..((.(((..	chr14:64970730-64971045(+)$1	1	250	263	19.4347
).))..(.((.(.	chr19:518498-518790(+)$1	1	88	101	17.4782
)))...).)))))	chr16:89660531-89660813(+)$1	1	70	83	14.2173
((.((..((((((	chr12:132402895-132403127(+)$1	1	71	84	13.4565
(...((((((((.	chr1:228290359-228290603(-)$1	1	101	114	23.4565
)..(((((((..(	chr3:47459890-47460188(-)$1	1	45	58	13.9999
))...)))).).)	chr4:52709570-52709814(+)$1	1	27	40	15.3043
(.((....)).))	chr19:1104259-1104535(+)$1	1	211	224	15.7391
.(((....))).)	chr19:1585240-1585521(-)$1	1	86	99	16.3913
...((((.(((((	chr9:126030123-126030405(-)$1	1	91	104	15.3043
.).)))(((((((	chr12:76477651-76477910(-)$1	1	65	78	16.0652
(((((.(.(((((	chr8:145026810-145027067(-)$1	1	98	111	19.7608
(.(.((.((((.(	chr4:103748267-103748560(-)$1	1	41	54	13.0217
.))))))))))).	chr4:1873658-1873915(+)$1	1	77	90	14.8695
)))((((....))	chr16:88954350-88954659(-)$1	1	29	42	16.6086
(((((((((....	chr21:9909273-9909574(-)$1	1	29	42	18.0217
)))((((((((((	chr22:47556102-47556350(+)$1	1	61	74	15.8478
...)))))))...	chr2:234762716-234763017(-)$1	1	147	160	16.3913
(((((.(((((..	chr8:128749837-128750158(+)$1	1	138	151	15.0869
....))).)))))	chr16:447344-447611(+)$1	1	85	98	20.9565
(.(((.(((...)	chr1:21995450-21995722(-)$1	1	132	145	15.8478
((((..((.((((	chr1:27916739-27917008(-)$1	1	98	111	18.4565
..)).)).)))))	chr12:114200654-114200926(-)$1	1	235	248	14.4347
(((....((((((	chr21:47565489-47565739(-)$1	1	48	61	16.3913
.))..)))..).)	chr7:1482316-1482579(-)$1	1	231	244	13.7826

#PSSM
G : 0.30	C : 0.19	A : 0.13	g : 0.13	U : 0.10	c : 0.06	u : 0.06	
G : 0.52	g : 0.23	U : 0.08	C : 0.06	A : 0.06	c : 0.02	
G : 0.56	g : 0.21	A : 0.10	U : 0.04	C : 0.02	c : 0.02	u : 0.02	
G : 0.63	g : 0.23	A : 0.04	U : 0.04	c : 0.02	C : 0.02	
G : 0.71	g : 0.19	U : 0.02	A : 0.02	c : 0.02	a : 0.02	
C : 0.56	G : 0.17	c : 0.15	g : 0.06	a : 0.02	A : 0.02	
U : 0.45	G : 0.17	g : 0.13	A : 0.10	u : 0.08	c : 0.02	C : 0.02	
G : 0.65	g : 0.23	U : 0.06	C : 0.04	
C : 0.52	c : 0.19	U : 0.10	G : 0.08	A : 0.04	a : 0.02	g : 0.02	
G : 0.47	U : 0.21	g : 0.19	A : 0.06	u : 0.02	c : 0.02	
G : 0.71	g : 0.21	u : 0.04	C : 0.02	
G : 0.63	g : 0.21	A : 0.08	a : 0.02	c : 0.02	U : 0.02	
G : 0.71	g : 0.26	A : 0.02	

#score	766.1739130434778
#seq	46
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_CDS_m1_run1.nuc.txt

#NT
AUACUAACA	chr1:171558415-171558858(+)$1	443	138	147	22.0877
UUACUAACA	chrM:13697-13903(+)$1	206	42	51	22.7894
AUACUAACA	chrM:7631-7838(+)$1	207	109	118	22.0877
UUACUAACA	chrM:13712-13917(+)$1	205	27	36	22.7894
UUACUAACA	chrM:13666-13872(+)$1	206	73	82	22.7894
UUACUAACA	chrM:13556-13763(+)$1	207	99	108	22.7894
UUACUAACC	chr5:34813513-34813803(+)$1	290	114	123	19.8070
ugacuaaca	chr13:111811204-111811520(+)$1	316	140	149	18.3157
AUACUAACA	chrX:41204246-41204537(+)$1	291	106	115	22.0877
UUACUAACA	chr13:96263601-96263939(-)$1	338	104	113	22.7894
AUACUAACU	chrM:10850-11053(+)$1	203	108	117	19.5438
UUACUAACU	chr2:61344320-61344598(+)$1	278	103	112	20.2456
UAACUAACA	chr4:186598538-186598812(-)$1	274	105	114	18.2280
AUACUAACU	chrM:10866-11070(+)$1	204	92	101	19.5438
UUACUAACA	chrM:13687-13896(+)$1	209	52	61	22.7894
UUACUAACA	chrM:13634-13838(+)$1	204	21	30	22.7894
AUACUAACA	chrM:7611-7827(+)$1	216	129	138	22.0877
AUACUAACA	chrM:7640-7842(+)$1	202	100	109	22.0877
UUACUAACA	chr2:27728402-27728723(+)$1	321	114	123	22.7894
UUACUAACA	chrM:13672-13879(+)$1	207	67	76	22.7894
UUACUAACA	chrM:13563-13766(+)$1	203	92	101	22.7894
CUACUAACC	chrM:9218-9431(+)$1	213	127	136	17.6140
auaCUAACA	chr2:63215014-63215283(+)$1	269	20	29	22.0877
UUACUAACA	chrM:13577-13781(+)$1	204	78	87	22.7894
CUACUAACC	chrM:9251-9468(+)$1	217	94	103	17.6140
auaCUAACA	chr2:63214972-63215189(+)$1	217	62	71	22.0877
AUACUAACA	chr14:54902719-54903023(-)$1	304	135	144	22.0877
AUACUAACU	chrM:10803-11036(+)$1	233	155	164	19.5438
UUACUAACA	chrM:13649-13856(+)$1	207	6	15	22.7894
AUACUAACA	chrM:7580-7811(+)$1	231	160	169	22.0877
AUACUAACA	chr1:62970341-62970686(-)$1	345	141	150	22.0877
auaCUAACA	chr2:63214989-63215214(+)$1	225	45	54	22.0877
AUACUAACC	chr4:431165-431422(-)$1	257	42	51	19.1052
UUACUAACA	chrM:13640-13847(+)$1	207	15	24	22.7894
AUACUAACU	chrM:10870-11072(+)$1	202	88	97	19.5438
CUACUAACU	chr1:154131378-154131683(-)$1	305	76	85	18.0526
UUACUAACA	chr5:77385215-77385498(-)$1	283	92	101	22.7894
UUACUAACA	chrM:13595-13800(+)$1	205	60	69	22.7894
UGACUAACA	chr1:982520-982808(+)$1	288	72	81	18.3157
UUACUAACA	chr12:32520433-32520718(+)$1	285	109	118	22.7894
AUACUAACU	chrM:10863-11066(+)$1	203	95	104	19.5438
UUACUAACA	chrM:13723-13927(+)$1	204	16	25	22.7894
UUACUAACA	chrM:13703-13912(+)$1	209	36	45	22.7894
AUACUAACA	chr19:4423152-4423441(+)$1	289	101	110	22.0877
AUACUAACU	chrM:10858-11063(+)$1	205	100	109	19.5438
UCACUAACA	chr11:102318889-102319162(-)$1	273	132	141	18.2280
AUACUAACA	chrM:7638-7840(+)$1	202	102	111	22.0877
UUACUAACA	chrM:13516-13732(+)$1	216	139	148	22.7894
UUACUAACA	chrM:13610-13813(+)$1	203	45	54	22.7894
uuacuaaca	chr13:76101855-76102111(-)$1	256	96	105	22.7894
uuacuaacu	chr11:18022210-18022505(-)$1	295	100	109	20.2456
CUACUAACC	chrM:9231-9447(+)$1	216	114	123	17.6140
UUACUAACA	chrM:13647-13849(+)$1	202	8	17	22.7894
AUACUAACU	chrM:10941-11167(+)$1	226	17	26	19.5438
UUACUAACA	chrM:13727-13929(+)$1	202	12	21	22.7894
AUACUAACU	chrM:10873-11082(+)$1	209	85	94	19.5438

#otherMatches

#Struct PSSM
ggggggg[c	chr6:87968214-87968511(+)$1	297	129	138	17.6140
ffff]dddd	chr1:171558415-171558858(+)$1	443	138	147	22.0877
^^^^^^^^^	chrM:13697-13903(+)$1	206	42	51	22.7894
:::::::::	chrM:7631-7838(+)$1	207	109	118	22.0877
^^^^^^^^^	chrM:13712-13917(+)$1	205	27	36	22.7894
^^^^^^^^^	chrM:13666-13872(+)$1	206	73	82	22.7894
^^^^^^^^^	chrM:13556-13763(+)$1	207	99	108	22.7894
:::::::::	chr5:34813513-34813803(+)$1	290	114	123	19.8070
ffffffbbe	chr13:111811204-111811520(+)$1	316	140	149	18.3157
d::::::dd	chrX:41204246-41204537(+)$1	291	106	115	22.0877
hhhhhhh44	chr13:96263601-96263939(-)$1	338	104	113	22.7894
:::::::::	chrM:10850-11053(+)$1	203	108	117	19.5438
eeee:::::	chr2:61344320-61344598(+)$1	278	103	112	20.2456
hhh++++++	chr4:186598538-186598812(-)$1	274	105	114	18.2280
:::::::::	chrM:10866-11070(+)$1	204	92	101	19.5438
^^^^^^^^^	chrM:13687-13896(+)$1	209	52	61	22.7894
^^^^^^^^^	chrM:13634-13838(+)$1	204	21	30	22.7894
:::::::::	chrM:7611-7827(+)$1	216	129	138	22.0877
:::::::::	chrM:7640-7842(+)$1	202	100	109	22.0877
hhhhhmmmm	chr2:27728402-27728723(+)$1	321	114	123	22.7894
^^^^^^^^^	chrM:13672-13879(+)$1	207	67	76	22.7894
^^^^^^^^^	chrM:13563-13766(+)$1	203	92	101	22.7894
gEEEEE:::	chrM:9218-9431(+)$1	213	127	136	17.6140
::::::::f	chr2:63215014-63215283(+)$1	269	20	29	22.0877
^^^^^^^^^	chrM:13577-13781(+)$1	204	78	87	22.7894
g::::::::	chrM:9251-9468(+)$1	217	94	103	17.6140
qqqqqqqqf	chr2:63214972-63215189(+)$1	217	62	71	22.0877
"""bb[ccc	chr14:54902719-54903023(-)$1	304	135	144	22.0877
:::::::::	chrM:10803-11036(+)$1	233	155	164	19.5438
:::::::::	chrM:13649-13856(+)$1	207	6	15	22.7894
:::::::::	chrM:7580-7811(+)$1	231	160	169	22.0877
ccc::::ee	chr1:62970341-62970686(-)$1	345	141	150	22.0877
::::::::f	chr2:63214989-63215214(+)$1	225	45	54	22.0877
:::::::::	chr4:431165-431422(-)$1	257	42	51	19.1052
^^^^^^^^^	chrM:13640-13847(+)$1	207	15	24	22.7894
:::::::::	chrM:10870-11072(+)$1	202	88	97	19.5438
:::::::::	chr1:154131378-154131683(-)$1	305	76	85	18.0526
eeeee::::	chr5:77385215-77385498(-)$1	283	92	101	22.7894
^^^^^^^^^	chrM:13595-13800(+)$1	205	60	69	22.7894
ccc::::::	chr1:982520-982808(+)$1	288	72	81	18.3157
cccc^^^^^	chr12:32520433-32520718(+)$1	285	109	118	22.7894
:::::::::	chrM:10863-11066(+)$1	203	95	104	19.5438
^^^^^^^^^	chrM:13723-13927(+)$1	204	16	25	22.7894
^^^^^^^^^	chrM:13703-13912(+)$1	209	36	45	22.7894
:::::::gg	chr19:4423152-4423441(+)$1	289	101	110	22.0877
:::::::::	chrM:10858-11063(+)$1	205	100	109	19.5438
dd$$$$$cc	chr11:102318889-102319162(-)$1	273	132	141	18.2280
:::::::::	chrM:7638-7840(+)$1	202	102	111	22.0877
^^^^^^^^^	chrM:13516-13732(+)$1	216	139	148	22.7894
^^^^^^^^^	chrM:13610-13813(+)$1	203	45	54	22.7894
occc]ccc:	chr13:76101855-76102111(-)$1	256	96	105	22.7894
eeee::CCC	chr11:18022210-18022505(-)$1	295	100	109	20.2456
gEEEEE:::	chrM:9231-9447(+)$1	216	114	123	17.6140
:::::::::	chrM:13647-13849(+)$1	202	8	17	22.7894
:::::::::	chrM:10941-11167(+)$1	226	17	26	19.5438
^^^^^^^^^	chrM:13727-13929(+)$1	202	12	21	22.7894
:::::::::	chrM:10873-11082(+)$1	209	85	94	19.5438

#DB
(((((((.(	chr6:87968214-87968511(+)$1	1	129	138	17.6140
)))).))))	chr1:171558415-171558858(+)$1	1	138	147	22.0877
.........	chrM:13697-13903(+)$1	1	42	51	22.7894
.........	chrM:7631-7838(+)$1	1	109	118	22.0877
.........	chrM:13712-13917(+)$1	1	27	36	22.7894
.........	chrM:13666-13872(+)$1	1	73	82	22.7894
.........	chrM:13556-13763(+)$1	1	99	108	22.7894
.........	chr5:34813513-34813803(+)$1	1	114	123	19.8070
))))))(((	chr13:111811204-111811520(+)$1	1	140	149	18.3157
)......((	chrX:41204246-41204537(+)$1	1	106	115	22.0877
)))))))..	chr13:96263601-96263939(-)$1	1	104	113	22.7894
.........	chrM:10850-11053(+)$1	1	108	117	19.5438
)))).....	chr2:61344320-61344598(+)$1	1	103	112	20.2456
(((......	chr4:186598538-186598812(-)$1	1	105	114	18.2280
.........	chrM:10866-11070(+)$1	1	92	101	19.5438
.........	chrM:13687-13896(+)$1	1	52	61	22.7894
.........	chrM:13634-13838(+)$1	1	21	30	22.7894
.........	chrM:7611-7827(+)$1	1	129	138	22.0877
.........	chrM:7640-7842(+)$1	1	100	109	22.0877
(((((....	chr2:27728402-27728723(+)$1	1	114	123	22.7894
.........	chrM:13672-13879(+)$1	1	67	76	22.7894
.........	chrM:13563-13766(+)$1	1	92	101	22.7894
))))))...	chrM:9218-9431(+)$1	1	127	136	17.6140
........(	chr2:63215014-63215283(+)$1	1	20	29	22.0877
.........	chrM:13577-13781(+)$1	1	78	87	22.7894
)........	chrM:9251-9468(+)$1	1	94	103	17.6140
........)	chr2:63214972-63215189(+)$1	1	62	71	22.0877
...((.(((	chr14:54902719-54903023(-)$1	1	135	144	22.0877
.........	chrM:10803-11036(+)$1	1	155	164	19.5438
.........	chrM:13649-13856(+)$1	1	6	15	22.7894
.........	chrM:7580-7811(+)$1	1	160	169	22.0877
)))....((	chr1:62970341-62970686(-)$1	1	141	150	22.0877
........(	chr2:63214989-63215214(+)$1	1	45	54	22.0877
.........	chr4:431165-431422(-)$1	1	42	51	19.1052
.........	chrM:13640-13847(+)$1	1	15	24	22.7894
.........	chrM:10870-11072(+)$1	1	88	97	19.5438
.........	chr1:154131378-154131683(-)$1	1	76	85	18.0526
)))))....	chr5:77385215-77385498(-)$1	1	92	101	22.7894
.........	chrM:13595-13800(+)$1	1	60	69	22.7894
)))......	chr1:982520-982808(+)$1	1	72	81	18.3157
((((.....	chr12:32520433-32520718(+)$1	1	109	118	22.7894
.........	chrM:10863-11066(+)$1	1	95	104	19.5438
.........	chrM:13723-13927(+)$1	1	16	25	22.7894
.........	chrM:13703-13912(+)$1	1	36	45	22.7894
.......((	chr19:4423152-4423441(+)$1	1	101	110	22.0877
.........	chrM:10858-11063(+)$1	1	100	109	19.5438
((.....((	chr11:102318889-102319162(-)$1	1	132	141	18.2280
.........	chrM:7638-7840(+)$1	1	102	111	22.0877
.........	chrM:13516-13732(+)$1	1	139	148	22.7894
.........	chrM:13610-13813(+)$1	1	45	54	22.7894
.))).))).	chr13:76101855-76102111(-)$1	1	96	105	22.7894
))))..(((	chr11:18022210-18022505(-)$1	1	100	109	20.2456
))))))...	chrM:9231-9447(+)$1	1	114	123	17.6140
.........	chrM:13647-13849(+)$1	1	8	17	22.7894
.........	chrM:10941-11167(+)$1	1	17	26	19.5438
.........	chrM:13727-13929(+)$1	1	12	21	22.7894
.........	chrM:10873-11082(+)$1	1	85	94	19.5438

#PSSM
U : 0.47	A : 0.33	C : 0.08	u : 0.05	a : 0.05	
U : 0.84	u : 0.08	g : 0.01	A : 0.01	G : 0.01	C : 0.01	
A : 0.89	a : 0.10	
C : 0.94	c : 0.05	
U : 0.94	u : 0.05	
A : 0.94	a : 0.05	
A : 0.94	a : 0.05	
C : 0.94	c : 0.05	
A : 0.66	U : 0.17	C : 0.10	a : 0.03	u : 0.01	

#score	1208.6491228070197
#seq	57
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_CDS_m2_run2.nuc.txt

#NT
GGGUGUGGGGGG	chr6:31762546-31762852(-)$1	306	60	72	17.6949
ggggcccggggc	chr2:231902498-231902754(+)$1	256	3	15	17.6101
CGGGGUCGGGGC	chr3:142443246-142443502(+)$1	256	93	105	17.2711
ggcggcggcggc	chr14:102786150-102786414(+)$1	264	0	12	16.2542
GCGGAUGGGGGC	chr10:31609023-31609265(+)$1	242	141	153	17.7796
GGGGGCGCCGGC	chr1:27023787-27024050(+)$1	263	73	85	16.5932
GGGAGCGCGGGC	chr10:91404103-91404458(-)$1	355	119	131	15.9152
GUGGGUGGGGGG	chr17:46986027-46986347(-)$1	320	71	83	17.6949
gcgggaggaggc	chr1:27022945-27023198(+)$1	253	41	53	16.5932
gcgggaggcggc	chr2:20423828-20424142(-)$1	314	90	102	16.6779
GGGGCUGGGGGA	chr1:28845117-28845400(+)$1	283	270	282	18.2881
ggcgaagggggc	chr20:57267815-57268088(+)$1	273	75	87	15.9152
gcgggaggaggc	chr1:27022891-27023145(+)$1	254	95	107	16.5932
GGGCGGCGGGGC	chr19:1467818-1468084(-)$1	266	101	113	16.2542
GGGGAUGGGGGA	chr12:124873017-124873332(-)$1	315	123	135	17.6101
ggaggaggaggC	chr10:103454200-103454468(-)$1	268	100	112	15.9152
GGGGGCGGGGGG	chr13:111366326-111366599(+)$1	273	107	119	20.4067
ggggcggggggc	chr9:116918129-116918385(+)$1	256	23	35	20.4915
GGGGCUGGGGUC	chr11:66626979-66627226(-)$1	247	148	160	17.1016
ggcgccgggggc	chr10:103603174-103603437(-)$1	263	99	111	16.7627
GGCGGUGGGGGU	chr17:76201421-76201657(+)$1	236	26	38	17.2711
GGGCCUGCGGGC	chr7:100732472-100732738(+)$1	266	16	28	14.3898
GCGGGGGGGGGC	chr14:103576580-103576828(+)$1	248	221	233	19.8135
gggugaggaggc	chr16:29912180-29912513(+)$1	333	24	36	16.2542
CGGGGAGGGGGC	chr14:23451335-23451616(-)$1	281	107	119	19.2203
GGAAGAGGGGGC	chr16:29998086-29998350(+)$1	264	221	233	15.3220
gggggugggggc	chr1:6505670-6505922(-)$1	252	36	48	24.7288
GCGGGGCGGGGC	chr2:219264947-219265181(+)$1	234	110	122	16.5932
GGGGGGAGGGGC	chr16:2029107-2029382(+)$1	275	89	101	19.8135
gggggcgggggc	chr8:81398834-81399146(+)$1	312	106	118	23.6271
UGGGGUGGGGGC	chr17:73823392-73823688(-)$1	296	13	25	20.4067
GUGGGCGGGGGU	chr14:105911901-105912170(+)$1	269	101	113	16.4237
uggggugggggc	chr1:27023202-27023432(+)$1	230	81	93	20.4067
GUGGGUGCGGGG	chr19:42401278-42401569(+)$1	291	117	129	13.9661
GCGGGGGGGGGC	chr14:103576655-103576927(+)$1	272	146	158	19.8135
cggggucggggc	chr1:2160041-2160332(+)$1	291	59	71	17.2711
GGGGGGCAGGGC	chr10:135168898-135169196(-)$1	298	117	129	15.8305
GAGGGGAGGGGC	chr9:33817607-33817864(+)$1	257	66	78	15.8305
ggggucgggggu	chr13:28712746-28713023(+)$1	277	141	153	16.5932
GGGGGAGCGGGG	chr19:49002197-49002498(-)$1	301	59	71	16.5084
GGGGGCGGGGGC	chr7:100027899-100028174(+)$1	275	171	183	23.6271
GGGGGUGGCAGC	chr19:58991523-58991791(-)$1	268	67	79	16.5932
GGGUGUUGGGGC	chr7:150777594-150777900(-)$1	306	224	236	17.3559
aggggucggggc	chr16:87426116-87426425(+)$1	309	37	49	17.1016
GGGUGGAGGGGC	chr19:2425964-2426258(-)$1	294	1	13	16.0000
GGGGGUGCCGGC	chr9:80646047-80646345(-)$1	298	154	166	17.6949
GGGGCUGGCGGC	chr20:62369626-62369881(+)$1	255	84	96	18.6271
GGGGGAGGGGGC	chr17:30264218-30264507(+)$1	289	71	83	23.4576
GGAGGUGGAGGG	chr1:27320569-27320815(+)$1	246	40	52	13.9661
GGGCGUGGAGGC	chr16:67997747-67997993(-)$1	246	189	201	17.5254
GGGGCUGGGGGC	chr20:3451843-3452093(+)$1	250	33	45	21.9322
GGGGGCGGGGGU	chrX:21959250-21959566(+)$1	316	250	262	20.2372
GGGGGUUGGGGC	chr20:62518759-62519034(+)$1	275	246	258	21.1694
gggcgaggcggc	chr1:27022998-27023296(+)$1	298	3	15	16.3389
ggggcugcgggc	chr3:52567648-52567895(-)$1	247	153	165	18.2033
GGGGGUAGGGGG	chr7:100841518-100841820(-)$1	302	82	94	18.0338
GGGGGCUGGGGU	chr20:35177488-35177784(-)$1	296	101	113	16.6779
ggggccgggggc	chr17:46985945-46986208(+)$1	263	79	91	20.8305

#otherMatches

#Struct PSSM
FFFFFF{BB{BB	chr19:14272231-14272572(+)$1	341	8	20	21.9322
ccc]eeeeeggg	chr6:31762546-31762852(-)$1	306	60	72	17.6949
EEKKFFFFFF{D	chr2:231902498-231902754(+)$1	256	3	15	17.6101
eeeee[gggggg	chr3:142443246-142443502(+)$1	256	93	105	17.2711
JJJJJJJJJJJJ	chr14:102786150-102786414(+)$1	264	0	12	16.2542
[ccc[bbmmmmb	chr10:31609023-31609265(+)$1	242	141	153	17.7796
oeeeee]ccc]b	chr1:27023787-27024050(+)$1	263	73	85	16.5932
JJJJcccmmmmc	chr10:91404103-91404458(-)$1	355	119	131	15.9152
[bb[bb[a[bb#	chr17:46986027-46986347(-)$1	320	71	83	17.6949
!a[bb[bb!!dd	chr1:27022945-27023198(+)$1	253	41	53	16.5932
qqqqa]a]====	chr2:20423828-20424142(-)$1	314	90	102	16.6779
}A}CCC}A}A}A	chr1:28845117-28845400(+)$1	283	270	282	18.2881
BB{A{BBKKA{I	chr20:57267815-57268088(+)$1	273	75	87	15.9152
dddd22bb]fff	chr1:27022891-27023145(+)$1	254	95	107	16.5932
mmmma]a]dddd	chr19:1467818-1468084(-)$1	266	101	113	16.2542
JJJJJJJJJbb[	chr12:124873017-124873332(-)$1	315	123	135	17.6101
KCCC{BBKKHHH	chr10:103454200-103454468(-)$1	268	100	112	15.9152
ppppp=======	chr13:111366326-111366599(+)$1	273	107	119	20.4067
]ddddggggggg	chr9:116918129-116918385(+)$1	256	23	35	20.4915
dddd[ffffffl	chr11:66626979-66627226(-)$1	247	148	160	17.1016
=========:BB	chr10:103603174-103603437(-)$1	263	99	111	16.7627
eeeeeffffff]	chr17:76201421-76201657(+)$1	236	26	38	17.2711
oddddcccccc[	chr7:100732472-100732738(+)$1	266	16	28	14.3898
========lll=	chr14:103576580-103576828(+)$1	248	221	233	19.8135
^^^^^bb]bb]a	chr16:29912180-29912513(+)$1	333	24	36	16.2542
dddd"""eeeee	chr14:23451335-23451616(-)$1	281	107	119	19.2203
>>>>eeeee]dd	chr16:29998086-29998350(+)$1	264	221	233	15.3220
4444eeeeebb[	chr1:6505670-6505922(-)$1	252	36	48	24.7288
]hhhhhhhhccc	chr2:219264947-219265181(+)$1	234	110	122	16.5932
DDD:eeeeeeee	chr16:2029107-2029382(+)$1	275	89	101	19.8135
dd333bbeeeee	chr8:81398834-81399146(+)$1	312	106	118	23.6271
GGGGGG:::ddd	chr17:73823392-73823688(-)$1	296	13	25	20.4067
bgggggggeeee	chr14:105911901-105912170(+)$1	269	101	113	16.4237
dddd[hhhhhhh	chr1:27023202-27023432(+)$1	230	81	93	20.4067
b[==========	chr19:42401278-42401569(+)$1	291	117	129	13.9661
========lll=	chr14:103576655-103576927(+)$1	272	146	158	19.8135
fqqqqqqqqfff	chr1:2160041-2160332(+)$1	291	59	71	17.2711
============	chr10:135168898-135169196(-)$1	298	117	129	15.8305
d[bbbb[bb[cc	chr9:33817607-33817864(+)$1	257	66	78	15.8305
====[bbmmmmb	chr13:28712746-28713023(+)$1	277	141	153	16.5932
}DDDD:ffffff	chr19:49002197-49002498(-)$1	301	59	71	16.5084
bbbb]bbeeeee	chr7:100027899-100028174(+)$1	275	171	183	23.6271
ffff[ccclllc	chr19:58991523-58991791(-)$1	268	67	79	16.5932
f[dddd[ggggg	chr7:150777594-150777900(-)$1	306	224	236	17.3559
mbb]ccc]eeee	chr16:87426116-87426425(+)$1	309	37	49	17.1016
::dddd[iiiii	chr19:2425964-2426258(-)$1	294	1	13	16.0000
FFFFFF:BB{JJ	chr9:80646047-80646345(-)$1	298	154	166	17.6949
[hhhhhhhh!!c	chr20:62369626-62369881(+)$1	255	84	96	18.6271
ddd####cccmm	chr17:30264218-30264507(+)$1	289	71	83	23.4576
:::eeeeemmmm	chr1:27320569-27320815(+)$1	246	40	52	13.9661
FFFFFFcccnnn	chr16:67997747-67997993(-)$1	246	189	201	17.5254
e[cccggggggg	chr20:3451843-3452093(+)$1	250	33	45	21.9322
ddddgggggggm	chrX:21959250-21959566(+)$1	316	250	262	20.2372
========lll=	chr20:62518759-62519034(+)$1	275	246	258	21.1694
a[bb!!ccc[bb	chr1:27022998-27023296(+)$1	298	3	15	16.3389
d[ccc[bb[ddd	chr3:52567648-52567895(-)$1	247	153	165	18.2033
peeeee]ddddd	chr7:100841518-100841820(-)$1	302	82	94	18.0338
dbb[ggggggg#	chr20:35177488-35177784(-)$1	296	101	113	16.6779
eeeee[======	chr17:46985945-46986208(+)$1	263	79	91	20.8305

#DB
((((((.((.((	chr19:14272231-14272572(+)$1	1	8	20	21.9322
))).)))))(((	chr6:31762546-31762852(-)$1	1	60	72	17.6949
((..((((((.(	chr2:231902498-231902754(+)$1	1	3	15	17.6101
(((((.((((((	chr3:142443246-142443502(+)$1	1	93	105	17.2711
((((((((((((	chr14:102786150-102786414(+)$1	1	0	12	16.2542
.(((.((....)	chr10:31609023-31609265(+)$1	1	141	153	17.7796
.))))).))).)	chr1:27023787-27024050(+)$1	1	73	85	16.5932
(((((((....)	chr10:91404103-91404458(-)$1	1	119	131	15.9152
.((.((.(.((.	chr17:46986027-46986347(-)$1	1	71	83	17.6949
.(.((.((..((	chr1:27022945-27023198(+)$1	1	41	53	16.5932
....).).))))	chr2:20423828-20424142(-)$1	1	90	102	16.6779
.).))).).).)	chr1:28845117-28845400(+)$1	1	270	282	18.2881
((.(.((..(.(	chr20:57267815-57268088(+)$1	1	75	87	15.9152
))))..)).)))	chr1:27022891-27023145(+)$1	1	95	107	16.5932
....).).))))	chr19:1467818-1468084(-)$1	1	101	113	16.2542
(((((((((((.	chr12:124873017-124873332(-)$1	1	123	135	17.6101
.(((.((..(((	chr10:103454200-103454468(-)$1	1	100	112	15.9152
.....)))))))	chr13:111366326-111366599(+)$1	1	107	119	20.4067
.))))(((((((	chr9:116918129-116918385(+)$1	1	23	35	20.4915
((((.((((((.	chr11:66626979-66627226(-)$1	1	148	160	17.1016
))))))))).))	chr10:103603174-103603437(-)$1	1	99	111	16.7627
))))))))))).	chr17:76201421-76201657(+)$1	1	26	38	17.2711
.)))))))(((.	chr7:100732472-100732738(+)$1	1	16	28	14.3898
((((((((...)	chr14:103576580-103576828(+)$1	1	221	233	19.8135
.....)).)).)	chr16:29912180-29912513(+)$1	1	24	36	16.2542
((((...(((((	chr14:23451335-23451616(-)$1	1	107	119	19.2203
....))))).))	chr16:29998086-29998350(+)$1	1	221	233	15.3220
....)))))((.	chr1:6505670-6505922(-)$1	1	36	48	24.7288
.)))))))))))	chr2:219264947-219265181(+)$1	1	110	122	16.5932
(((.((((((((	chr16:2029107-2029382(+)$1	1	89	101	19.8135
))...)))))))	chr8:81398834-81399146(+)$1	1	106	118	23.6271
((((((...(((	chr17:73823392-73823688(-)$1	1	13	25	20.4067
))))))))))))	chr14:105911901-105912170(+)$1	1	101	113	16.4237
((((.(((((((	chr1:27023202-27023432(+)$1	1	81	93	20.4067
(.((((((((((	chr19:42401278-42401569(+)$1	1	117	129	13.9661
((((((((...)	chr14:103576655-103576927(+)$1	1	146	158	19.8135
(........)))	chr1:2160041-2160332(+)$1	1	59	71	17.2711
((((((((((((	chr10:135168898-135169196(-)$1	1	117	129	15.8305
(.((((.((.((	chr9:33817607-33817864(+)$1	1	66	78	15.8305
((((.((....)	chr13:28712746-28713023(+)$1	1	141	153	16.5932
.)))).((((((	chr19:49002197-49002498(-)$1	1	59	71	16.5084
)))).)))))))	chr7:100027899-100028174(+)$1	1	171	183	23.6271
((((.(((...)	chr19:58991523-58991791(-)$1	1	67	79	16.5932
(.((((.(((((	chr7:150777594-150777900(-)$1	1	224	236	17.3559
.)).))).))))	chr16:87426116-87426425(+)$1	1	37	49	17.1016
..((((.(((((	chr19:2425964-2426258(-)$1	1	1	13	16.0000
)))))).((.((	chr9:80646047-80646345(-)$1	1	154	166	17.6949
.((((((((..(	chr20:62369626-62369881(+)$1	1	84	96	18.6271
(((....(((..	chr17:30264218-30264507(+)$1	1	71	83	23.4576
...(((((....	chr1:27320569-27320815(+)$1	1	40	52	13.9661
))))))(((...	chr16:67997747-67997993(-)$1	1	189	201	17.5254
(.((((((((((	chr20:3451843-3452093(+)$1	1	33	45	21.9322
))))(((((((.	chrX:21959250-21959566(+)$1	1	250	262	20.2372
((((((((...)	chr20:62518759-62519034(+)$1	1	246	258	21.1694
(.((..(((.((	chr1:27022998-27023296(+)$1	1	3	15	16.3389
(.(((.((.(((	chr3:52567648-52567895(-)$1	1	153	165	18.2033
.))))).))))(	chr7:100841518-100841820(-)$1	1	82	94	18.0338
(((.(((((((.	chr20:35177488-35177784(-)$1	1	101	113	16.6779
(((((.((((((	chr17:46985945-46986208(+)$1	1	79	91	20.8305

#PSSM
G : 0.62	g : 0.27	C : 0.03	U : 0.01	u : 0.01	c : 0.01	a : 0.01	
G : 0.54	g : 0.27	C : 0.06	U : 0.05	c : 0.05	A : 0.01	
G : 0.62	g : 0.25	c : 0.05	A : 0.03	a : 0.01	C : 0.01	
G : 0.54	g : 0.28	U : 0.05	C : 0.05	A : 0.03	u : 0.01	c : 0.01	
G : 0.54	g : 0.20	C : 0.10	c : 0.08	A : 0.03	a : 0.01	u : 0.01	
U : 0.35	G : 0.13	C : 0.11	a : 0.11	c : 0.10	u : 0.08	A : 0.06	g : 0.01	
G : 0.49	g : 0.27	C : 0.06	A : 0.06	c : 0.05	U : 0.05	
G : 0.55	g : 0.30	C : 0.10	A : 0.01	c : 0.01	
G : 0.57	g : 0.20	C : 0.06	a : 0.06	c : 0.05	A : 0.03	
G : 0.66	g : 0.32	A : 0.01	
G : 0.66	g : 0.32	U : 0.01	
C : 0.47	c : 0.28	G : 0.11	U : 0.06	A : 0.03	u : 0.01	

#score	1062.813559322034
#seq	59
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_transcript_m1_run1.nuc.txt

#NT
aagaagg	chr9:100777544-100777870(+)$1	326	107	114	15.3478
aagaagg	chr14:102551150-102551433(-)$1	283	239	246	15.3478
AAGAAGG	chr2:232325089-232325328(-)$1	239	82	89	15.3478
AAGAAGG	chr2:232325128-232325375(-)$1	247	129	136	15.3478
AAGAAUG	chr20:17943256-17943502(-)$1	246	74	81	17.7391
AAUAAUG	chr9:139565004-139565226(+)$1	222	113	120	13.6086
AAGAAUG	chr20:17943321-17943552(-)$1	231	124	131	17.7391
aauaaug	chr15:72395035-72395288(-)$1	253	45	52	13.6086
AAGGAUG	chr1:205688578-205688877(-)$1	299	25	32	14.0434
AAGAAUG	chr2:232326226-232326502(-)$1	276	41	48	17.7391
AAGAAAG	chr2:232325435-232325678(-)$1	243	142	149	15.3478
aaggaug	chr19:893482-893690(+)$1	208	69	76	14.0434
AAGAAAG	chr2:232326529-232326758(-)$1	229	45	52	15.3478
AAGAAUG	chr20:17943302-17943521(-)$1	219	93	100	17.7391
AAGAAUG	chr4:174252984-174253324(-)$1	340	154	161	17.7391
AAGAAUU	chr12:98993365-98993614(+)$1	249	29	36	13.1739
aagaaag	chr2:99992833-99993115(+)$1	282	57	64	15.3478
AAGAAUG	chr12:104341071-104341309(+)$1	238	149	156	17.7391
cagaaug	chr6:31958180-31958383(+)$1	203	96	103	13.1739
AAGAAUG	chr13:92003091-92003315(+)$1	224	90	97	17.7391
AAGGAUG	chr2:232322875-232323091(-)$1	216	95	102	14.0434
AAGAAUG	chr4:174253124-174253379(-)$1	255	209	216	17.7391

#otherMatches

#Struct PSSM
::ccc[a	chr2:232319740-232319976(-)$1	236	108	115	15.3478
b333ccc	chr9:100777544-100777870(+)$1	326	107	114	15.3478
:::::::	chr14:102551150-102551433(-)$1	283	239	246	15.3478
++++ddd	chr2:232325089-232325328(-)$1	239	82	89	15.3478
++++ddd	chr2:232325128-232325375(-)$1	247	129	136	15.3478
ffffff#	chr20:17943256-17943502(-)$1	246	74	81	17.7391
=======	chr9:139565004-139565226(+)$1	222	113	120	13.6086
EEEEE}D	chr20:17943321-17943552(-)$1	231	124	131	17.7391
mbb]fff	chr15:72395035-72395288(-)$1	253	45	52	13.6086
eeebb]d	chr1:205688578-205688877(-)$1	299	25	32	14.0434
:::::ee	chr2:232326226-232326502(-)$1	276	41	48	17.7391
e$$$$$c	chr2:232325435-232325678(-)$1	243	142	149	15.3478
ncccccc	chr19:893482-893690(+)$1	208	69	76	14.0434
dd::::c	chr2:232326529-232326758(-)$1	229	45	52	15.3478
DMMMMEE	chr20:17943302-17943521(-)$1	219	93	100	17.7391
::ddddm	chr4:174252984-174253324(-)$1	340	154	161	17.7391
:::::::	chr12:98993365-98993614(+)$1	249	29	36	13.1739
:::::::	chr2:99992833-99993115(+)$1	282	57	64	15.3478
55555cc	chr12:104341071-104341309(+)$1	238	149	156	17.7391
YYCCC~~	chr6:31958180-31958383(+)$1	203	96	103	13.1739
pppppdd	chr13:92003091-92003315(+)$1	224	90	97	17.7391
d[ccc++	chr2:232322875-232323091(-)$1	216	95	102	14.0434
::ddddm	chr4:174253124-174253379(-)$1	255	209	216	17.7391

#DB
..(((.(	chr2:232319740-232319976(-)$1	1	108	115	15.3478
)...)))	chr9:100777544-100777870(+)$1	1	107	114	15.3478
.......	chr14:102551150-102551433(-)$1	1	239	246	15.3478
....(((	chr2:232325089-232325328(-)$1	1	82	89	15.3478
....(((	chr2:232325128-232325375(-)$1	1	129	136	15.3478
((((((.	chr20:17943256-17943502(-)$1	1	74	81	17.7391
)))))))	chr9:139565004-139565226(+)$1	1	113	120	13.6086
))))).)	chr20:17943321-17943552(-)$1	1	124	131	17.7391
.)).)))	chr15:72395035-72395288(-)$1	1	45	52	13.6086
))))).)	chr1:205688578-205688877(-)$1	1	25	32	14.0434
.....((	chr2:232326226-232326502(-)$1	1	41	48	17.7391
(.....(	chr2:232325435-232325678(-)$1	1	142	149	15.3478
.)))(((	chr19:893482-893690(+)$1	1	69	76	14.0434
))....(	chr2:232326529-232326758(-)$1	1	45	52	15.3478
(....((	chr20:17943302-17943521(-)$1	1	93	100	17.7391
..((((.	chr4:174252984-174253324(-)$1	1	154	161	17.7391
.......	chr12:98993365-98993614(+)$1	1	29	36	13.1739
.......	chr2:99992833-99993115(+)$1	1	57	64	15.3478
.....))	chr12:104341071-104341309(+)$1	1	149	156	17.7391
..)))..	chr6:31958180-31958383(+)$1	1	96	103	13.1739
.....))	chr13:92003091-92003315(+)$1	1	90	97	17.7391
(.(((..	chr2:232322875-232323091(-)$1	1	95	102	14.0434
..((((.	chr4:174253124-174253379(-)$1	1	209	216	17.7391

#PSSM
A : 0.73	a : 0.21	c : 0.04	
A : 0.73	a : 0.26	
G : 0.69	g : 0.21	U : 0.04	u : 0.04	
A : 0.65	a : 0.21	G : 0.08	g : 0.04	
A : 0.73	a : 0.26	
U : 0.52	A : 0.13	u : 0.13	g : 0.08	G : 0.08	a : 0.04	
G : 0.69	g : 0.26	U : 0.04	

#score	360.391304347826
#seq	23
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_transcript_m1_run2.nuc.txt

#NT
CGGCAGCGCCCU	chr6:37138064-37138340(+)$1	276	98	110	23.6190
CGGCCGGGUCCC	chr16:29818737-29818993(+)$1	256	19	31	19.5714
CGGCACGGCCCU	chr8:144940520-144940795(-)$1	275	141	153	18.1428
cggcagcgCCCU	chr19:41111295-41111612(+)$1	317	159	171	23.6190
cgcccgcgcccc	chrX:152953830-152954113(+)$1	283	20	32	19.8095
UGGCAGUGUCCU	chr17:7480031-7480300(+)$1	269	157	169	15.0476
CCGCCGcgcccu	chr2:70314573-70314940(+)$1	367	65	77	20.0476
GAACAGGGCCCU	chr5:79946950-79947194(-)$1	244	114	126	11.0000
CGCCCGCGCCCC	chrX:152953588-152953898(+)$1	310	50	62	19.8095
cggcCGGGCCCC	chr19:39340321-39340607(-)$1	286	162	174	22.6666
CGGCGGGGUCCU	chr1:200378742-200378952(-)$1	210	10	22	18.6190
cggcCGGGCCCC	chr19:39340237-39340490(-)$1	253	45	57	22.6666
CGGCGGCGCCGC	chr19:47290824-47291110(-)$1	286	226	238	17.9047
cggccgcgcccc	chr20:57466610-57466874(+)$1	264	141	153	23.6190
GGGCAGCGCGCU	chr10:17271230-17271578(+)$1	348	310	322	15.7619
CGGCGGCGcccc	chr1:234745102-234745360(-)$1	258	62	74	22.4285
CGGCCGAGCCCU	chr16:30081050-30081284(+)$1	234	206	218	22.1904
CCGCAGCGCUCU	chr6:31802962-31803194(+)$1	232	125	137	15.5238
CGGCGGAGCCCC	chr7:5569711-5569979(-)$1	268	131	143	20.7619
UGGCAGUGUCCU	chr17:7480100-7480360(+)$1	260	88	100	15.0476

#otherMatches

#Struct PSSM
FFFF{CCCA:::	chr16:29818313-29818578(+)$1	265	22	34	21.9523
!ffffffppppp	chr6:37138064-37138340(+)$1	276	98	110	23.6190
C{CCCLLLGGGG	chr16:29818737-29818993(+)$1	256	19	31	19.5714
fffff!!bbmmm	chr8:144940520-144940795(-)$1	275	141	153	18.1428
mmma22eeeee:	chr19:41111295-41111612(+)$1	317	159	171	23.6190
EEKKEEEEE:::	chrX:152953830-152954113(+)$1	283	20	32	19.8095
===[ddddllld	chr17:7480031-7480300(+)$1	269	157	169	15.0476
MMBB{CCC::::	chr2:70314573-70314940(+)$1	367	65	77	20.0476
"""cccmmmmcc	chr5:79946950-79947194(-)$1	244	114	126	11.0000
hhhhhhhh22a]	chrX:152953588-152953898(+)$1	310	50	62	19.8095
hhhhhh]ccccc	chr19:39340321-39340607(-)$1	286	162	174	22.6666
BB{GGGGGGG{C	chr1:200378742-200378952(-)$1	210	10	22	18.6190
bb[ccc[eeeee	chr19:39340237-39340490(-)$1	253	45	57	22.6666
hhhhhhhh22bb	chr19:47290824-47291110(-)$1	286	226	238	17.9047
3bb]ccccccac	chr20:57466610-57466874(+)$1	264	141	153	23.6190
HHHH}CCC:fff	chr10:17271230-17271578(+)$1	348	310	322	15.7619
ee]bbdddd]==	chr1:234745102-234745360(-)$1	258	62	74	22.4285
YDDDDDDDDZZZ	chr16:30081050-30081284(+)$1	234	206	218	22.1904
]bb22ffffff:	chr6:31802962-31803194(+)$1	232	125	137	15.5238
EE{BB:======	chr7:5569711-5569979(-)$1	268	131	143	20.7619
===[ddddllld	chr17:7480100-7480360(+)$1	260	88	100	15.0476

#DB
((((.((((...	chr16:29818313-29818578(+)$1	1	22	34	21.9523
.((((((.....	chr6:37138064-37138340(+)$1	1	98	110	23.6190
(.(((...((((	chr16:29818737-29818993(+)$1	1	19	31	19.5714
(((((..((...	chr8:144940520-144940795(-)$1	1	141	153	18.1428
...)..))))).	chr19:41111295-41111612(+)$1	1	159	171	23.6190
((..(((((...	chrX:152953830-152954113(+)$1	1	20	32	19.8095
(((.((((...)	chr17:7480031-7480300(+)$1	1	157	169	15.0476
..((.(((....	chr2:70314573-70314940(+)$1	1	65	77	20.0476
...(((....))	chr5:79946950-79947194(-)$1	1	114	126	11.0000
))))))))..).	chrX:152953588-152953898(+)$1	1	50	62	19.8095
)))))).)))))	chr19:39340321-39340607(-)$1	1	162	174	22.6666
((.(((((((.(	chr1:200378742-200378952(-)$1	1	10	22	18.6190
((.(((.(((((	chr19:39340237-39340490(-)$1	1	45	57	22.6666
))))))))..))	chr19:47290824-47291110(-)$1	1	226	238	17.9047
.)).)))(((((	chr20:57466610-57466874(+)$1	1	141	153	23.6190
)))).))).(((	chr10:17271230-17271578(+)$1	1	310	322	15.7619
)).)))))).))	chr1:234745102-234745360(-)$1	1	62	74	22.4285
.))))))))...	chr16:30081050-30081284(+)$1	1	206	218	22.1904
.))..)))))).	chr6:31802962-31803194(+)$1	1	125	137	15.5238
((.((.((((((	chr7:5569711-5569979(-)$1	1	131	143	20.7619
(((.((((...)	chr17:7480100-7480360(+)$1	1	88	100	15.0476

#PSSM
C : 0.52	c : 0.28	U : 0.09	G : 0.09	
G : 0.57	g : 0.28	C : 0.09	A : 0.04	
G : 0.61	g : 0.23	c : 0.04	A : 0.04	C : 0.04	
C : 0.71	c : 0.28	
A : 0.33	C : 0.28	G : 0.19	c : 0.14	a : 0.04	
G : 0.76	g : 0.19	C : 0.04	
C : 0.28	G : 0.28	c : 0.19	A : 0.14	U : 0.09	
G : 0.80	g : 0.19	
C : 0.61	U : 0.19	c : 0.19	
C : 0.71	c : 0.19	G : 0.04	U : 0.04	
C : 0.76	c : 0.19	G : 0.04	
U : 0.47	C : 0.33	c : 0.14	u : 0.04	

#score	409.80952380952397
#seq	21
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_UTR_m1_run2.nuc.txt

#NT
cacaugcacacac	chr11:2152619-2152822(-)$1	203	38	51	36.8571
caccugcacacac	chr11:2152546-2152756(-)$1	210	70	83	33.7619
cacaugcacacac	chr11:2152723-2152937(-)$1	214	83	96	36.8571
cacaugcacacac	chr11:2152605-2152809(-)$1	204	25	38	36.8571
cacaugcacacac	chr11:2152592-2152805(-)$1	213	21	34	36.8571
caccugcacacac	chr11:2152484-2152692(-)$1	208	6	19	33.7619
cacaugcacacac	chr11:2152634-2152839(-)$1	205	55	68	36.8571
caccugcacacac	chr11:2152492-2152702(-)$1	210	16	29	33.7619
cacaugcacacac	chr11:2153184-2153388(-)$1	204	186	199	36.8571
cacaugcgcacac	chr11:2152480-2152684(-)$1	204	10	23	32.5714
cacaugcacacac	chr11:2152622-2152827(-)$1	205	43	56	36.8571
cacaugcacacac	chr11:2152663-2152870(-)$1	207	16	29	36.8571
cacaugcacacac	chr11:2152680-2152890(-)$1	210	36	49	36.8571
caccugcacacac	chr11:2152541-2152746(-)$1	205	60	73	33.7619
cacaugcacacac	chr11:2152582-2152784(-)$1	202	0	13	36.8571
caccugcacacac	chr11:2152502-2152709(-)$1	207	23	36	33.7619
cacaugcacacac	chr11:2153020-2153227(-)$1	207	25	38	36.8571
cacaugcacacac	chr11:2152675-2152880(-)$1	205	26	39	36.8571
cacacgcacacCC	chr11:2152456-2152662(-)$1	206	0	13	27.8095
cacaugcacacac	chr11:2152972-2153178(-)$1	206	20	33	36.8571
caccugcacacac	chr11:2152509-2152723(-)$1	214	37	50	33.7619
cacaugcgcacac	chr11:2152472-2152675(-)$1	203	1	14	32.5714
cacaugcacacac	chr11:2152659-2152863(-)$1	204	9	22	36.8571
CAAAUGCACACAC	chr17:79477400-79477663(-)$1	263	12	25	32.2142
cacaugcacacac	chr11:2152695-2152898(-)$1	203	44	57	36.8571
cacaugcacacac	chr11:2153061-2153272(-)$1	211	70	83	36.8571
caccugcacacac	chr11:2152578-2152782(-)$1	204	96	109	33.7619
CAGCUacacacac	chr11:2153200-2153404(-)$1	204	64	77	24.3571
cacaugcacacac	chr11:2152737-2152941(-)$1	204	87	100	36.8571
cacaugcacacac	chr11:2152652-2152858(-)$1	206	4	17	36.8571
cacacgcacacCC	chr11:2152462-2152670(-)$1	208	8	21	27.8095
cacaugcacacac	chr11:2152978-2153192(-)$1	214	34	47	36.8571
cacaugcacacac	chr11:2152964-2153172(-)$1	208	14	27	36.8571
cacaugcacacac	chr11:2153171-2153379(-)$1	208	177	190	36.8571
cacaugcacacac	chr11:2152741-2152948(-)$1	207	94	107	36.8571
cacaugcacacac	chr11:2152748-2152977(-)$1	229	123	136	36.8571
cacaugcgcacac	chr11:2152475-2152680(-)$1	205	6	19	32.5714
cacaugcacacac	chr11:2152718-2152923(-)$1	205	69	82	36.8571
cacaugcacacac	chr11:2152584-2152792(-)$1	208	8	21	36.8571
cacaugcacacac	chr11:2152627-2152829(-)$1	202	45	58	36.8571
cacaugcacacac	chr11:2153156-2153361(-)$1	205	159	172	36.8571

#otherMatches

#Struct PSSM
ooooccc::::::	chr11:2153027-2153244(-)$1	217	42	55	36.8571
ooooccc::::::	chr11:2152619-2152822(-)$1	203	38	51	36.8571
ooooccc::::::	chr11:2152546-2152756(-)$1	210	70	83	33.7619
::eeeeexxxxxx	chr11:2152723-2152937(-)$1	214	83	96	36.8571
OOODDDD::::::	chr11:2152605-2152809(-)$1	204	25	38	36.8571
ooooccc::::::	chr11:2152592-2152805(-)$1	213	21	34	36.8571
:::::EEEEE{CC	chr11:2152484-2152692(-)$1	208	6	19	33.7619
ooooccc::::::	chr11:2152634-2152839(-)$1	205	55	68	36.8571
ooooccc::::::	chr11:2152492-2152702(-)$1	210	16	29	33.7619
::EEEEE||||||	chr11:2153184-2153388(-)$1	204	186	199	36.8571
CC::ddddqqqqq	chr11:2152480-2152684(-)$1	204	10	23	32.5714
ooooccc::::::	chr11:2152622-2152827(-)$1	205	43	56	36.8571
::::cccpppppp	chr11:2152663-2152870(-)$1	207	16	29	36.8571
::eeeeexxxxxx	chr11:2152680-2152890(-)$1	210	36	49	36.8571
ooooccc::::::	chr11:2152541-2152746(-)$1	205	60	73	33.7619
::EEEEE::::::	chr11:2152582-2152784(-)$1	202	0	13	36.8571
ooooccc::::::	chr11:2152502-2152709(-)$1	207	23	36	33.7619
ooooccc::::::	chr11:2153020-2153227(-)$1	207	25	38	36.8571
::eeeeexxxxxx	chr11:2152675-2152880(-)$1	205	26	39	36.8571
::::EEEEE::::	chr11:2152456-2152662(-)$1	206	0	13	27.8095
::::cccpppppp	chr11:2152972-2153178(-)$1	206	20	33	36.8571
ooooccc::::::	chr11:2152509-2152723(-)$1	214	37	50	33.7619
::::ddddqqqqq	chr11:2152472-2152675(-)$1	203	1	14	32.5714
ooooccc::::::	chr11:2152659-2152863(-)$1	204	9	22	36.8571
ggggg:::::CCC	chr17:79477400-79477663(-)$1	263	12	25	32.2142
::eeeeexxxxxx	chr11:2152695-2152898(-)$1	203	44	57	36.8571
ooooccc::::::	chr11:2153061-2153272(-)$1	211	70	83	36.8571
ooooccc::::::	chr11:2152578-2152782(-)$1	204	96	109	33.7619
ccccczzzzzzzz	chr11:2153200-2153404(-)$1	204	64	77	24.3571
::eeeeexxxxxx	chr11:2152737-2152941(-)$1	204	87	100	36.8571
::::cccpppppp	chr11:2152652-2152858(-)$1	206	4	17	36.8571
::::EEEEE::::	chr11:2152462-2152670(-)$1	208	8	21	27.8095
::::cccpppppp	chr11:2152978-2153192(-)$1	214	34	47	36.8571
::::cccpppppp	chr11:2152964-2153172(-)$1	208	14	27	36.8571
::EEEEE::::::	chr11:2153171-2153379(-)$1	208	177	190	36.8571
::eeeeexxxxxx	chr11:2152741-2152948(-)$1	207	94	107	36.8571
::eeeeexxxxxx	chr11:2152748-2152977(-)$1	229	123	136	36.8571
::::ddddqqqqq	chr11:2152475-2152680(-)$1	205	6	19	32.5714
::eeeeexxxxxx	chr11:2152718-2152923(-)$1	205	69	82	36.8571
NNEEEEE::::::	chr11:2152584-2152792(-)$1	208	8	21	36.8571
ooooccc::::::	chr11:2152627-2152829(-)$1	202	45	58	36.8571
::EEEEE::::::	chr11:2153156-2153361(-)$1	205	159	172	36.8571

#DB
....)))......	chr11:2153027-2153244(-)$1	1	42	55	36.8571
....)))......	chr11:2152619-2152822(-)$1	1	38	51	36.8571
....)))......	chr11:2152546-2152756(-)$1	1	70	83	33.7619
..(((((......	chr11:2152723-2152937(-)$1	1	83	96	36.8571
...((((......	chr11:2152605-2152809(-)$1	1	25	38	36.8571
....)))......	chr11:2152592-2152805(-)$1	1	21	34	36.8571
.....(((((.((	chr11:2152484-2152692(-)$1	1	6	19	33.7619
....)))......	chr11:2152634-2152839(-)$1	1	55	68	36.8571
....)))......	chr11:2152492-2152702(-)$1	1	16	29	33.7619
..)))))......	chr11:2153184-2153388(-)$1	1	186	199	36.8571
((..((((.....	chr11:2152480-2152684(-)$1	1	10	23	32.5714
....)))......	chr11:2152622-2152827(-)$1	1	43	56	36.8571
....(((......	chr11:2152663-2152870(-)$1	1	16	29	36.8571
..(((((......	chr11:2152680-2152890(-)$1	1	36	49	36.8571
....)))......	chr11:2152541-2152746(-)$1	1	60	73	33.7619
..(((((......	chr11:2152582-2152784(-)$1	1	0	13	36.8571
....)))......	chr11:2152502-2152709(-)$1	1	23	36	33.7619
....)))......	chr11:2153020-2153227(-)$1	1	25	38	36.8571
..(((((......	chr11:2152675-2152880(-)$1	1	26	39	36.8571
....(((((....	chr11:2152456-2152662(-)$1	1	0	13	27.8095
....(((......	chr11:2152972-2153178(-)$1	1	20	33	36.8571
....)))......	chr11:2152509-2152723(-)$1	1	37	50	33.7619
....((((.....	chr11:2152472-2152675(-)$1	1	1	14	32.5714
....)))......	chr11:2152659-2152863(-)$1	1	9	22	36.8571
))))).....(((	chr17:79477400-79477663(-)$1	1	12	25	32.2142
..(((((......	chr11:2152695-2152898(-)$1	1	44	57	36.8571
....)))......	chr11:2153061-2153272(-)$1	1	70	83	36.8571
....)))......	chr11:2152578-2152782(-)$1	1	96	109	33.7619
))(((........	chr11:2153200-2153404(-)$1	1	64	77	24.3571
..(((((......	chr11:2152737-2152941(-)$1	1	87	100	36.8571
....(((......	chr11:2152652-2152858(-)$1	1	4	17	36.8571
....(((((....	chr11:2152462-2152670(-)$1	1	8	21	27.8095
....(((......	chr11:2152978-2153192(-)$1	1	34	47	36.8571
....(((......	chr11:2152964-2153172(-)$1	1	14	27	36.8571
..)))))......	chr11:2153171-2153379(-)$1	1	177	190	36.8571
..(((((......	chr11:2152741-2152948(-)$1	1	94	107	36.8571
..(((((......	chr11:2152748-2152977(-)$1	1	123	136	36.8571
....((((.....	chr11:2152475-2152680(-)$1	1	6	19	32.5714
..(((((......	chr11:2152718-2152923(-)$1	1	69	82	36.8571
..(((((......	chr11:2152584-2152792(-)$1	1	8	21	36.8571
....)))......	chr11:2152627-2152829(-)$1	1	45	58	36.8571
..)))))......	chr11:2153156-2153361(-)$1	1	159	172	36.8571

#PSSM
c : 0.95	C : 0.04	
a : 0.95	A : 0.04	
c : 0.95	A : 0.02	G : 0.02	
a : 0.78	c : 0.16	A : 0.02	C : 0.02	
u : 0.90	c : 0.04	U : 0.04	
g : 0.95	G : 0.02	a : 0.02	
c : 0.97	C : 0.02	
a : 0.90	g : 0.07	A : 0.02	
c : 0.97	C : 0.02	
a : 0.97	A : 0.02	
c : 0.97	C : 0.02	
a : 0.92	C : 0.04	A : 0.02	
c : 0.92	C : 0.07	

#score	1478.2380952380968
#seq	42
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_CDS_m1_run1.nuc.txt

#NT
CGCUgcc	chr19:2456705-2457031(-)$1	326	170	177	17.1764
CCCUGCC	chr9:139581601-139581954(-)$1	353	2	9	12.7647
CGCGGCC	chr1:116915980-116916235(+)$1	255	239	246	14.4558
UGCUGCC	chr17:73760969-73761372(-)$1	403	309	316	13.5735
CGCUGCC	chr17:635834-636106(+)$1	272	212	219	17.1764
cgccgcc	chr7:97910975-97911215(+)$1	240	56	63	14.2352
CGCUGCC	chrX:21857764-21858027(+)$1	263	78	85	17.1764
cgcggcc	chr1:94883871-94884154(+)$1	283	45	52	14.4558
CGCGGCC	chr8:125551385-125551628(+)$1	243	16	23	14.4558
cgcugcc	chr3:124774615-124774892(-)$1	277	91	98	17.1764
CCCUGCC	chrX:68836041-68836369(+)$1	328	200	207	12.7647
CGCUGCC	chr1:160068096-160068385(-)$1	289	18	25	17.1764
CGCAGCC	chr9:136234127-136234370(-)$1	243	11	18	14.3088
CGCGGCC	chr3:53164257-53164547(-)$1	290	157	164	14.4558
CCCUGCC	chr20:5154094-5154406(+)$1	312	144	151	12.7647
CGCUGGC	chrX:20284586-20284811(-)$1	225	65	72	12.9117
CGCUGCC	chr20:8000059-8000331(-)$1	272	21	28	17.1764
CGCUGCC	chr22:45898775-45899045(+)$1	270	26	33	17.1764
CGGUGCC	chr8:38126541-38126812(-)$1	271	18	25	12.4705
cgcugcc	chr1:27320418-27320687(+)$1	269	16	23	17.1764
UGCUGCC	chr8:98788157-98788431(+)$1	274	131	138	13.5735
GGCUGCC	chr7:150033965-150034216(+)$1	251	123	130	13.7941
GGCUGCC	chr21:46359864-46360203(+)$1	339	146	153	13.7941
cgccgcc	chr17:76921038-76921281(-)$1	243	45	52	14.2352
CGCUCCC	chr2:27008966-27009215(+)$1	249	31	38	12.6911
cccugcc	chr19:1848121-1848413(-)$1	292	122	129	12.7647
CGCUUCC	chr4:77996534-77996793(-)$1	259	5	12	12.7647
cgcuggc	chr19:19006700-19007012(-)$1	312	219	226	12.9117
cgccgcc	chr16:765180-765488(+)$1	308	32	39	14.2352
CGCGGCC	chr7:127228468-127228720(+)$1	252	21	28	14.4558
GGCUGCC	chr2:27255749-27256103(+)$1	354	10	17	13.7941
CGCGGCC	chr2:239335560-239335861(+)$1	301	210	217	14.4558
cgcugcc	chr2:160654541-160654805(-)$1	264	69	76	17.1764
UGCUGCC	chr11:64879916-64880198(+)$1	282	91	98	13.5735
GGCUGCC	chr3:145878675-145878975(-)$1	300	57	64	13.7941
cgccgcc	chr17:39968003-39968315(-)$1	312	64	71	14.2352
cgcugcc	chr3:51428677-51428944(+)$1	267	76	83	17.1764
CGCAGCC	chr16:70285648-70285912(-)$1	264	24	31	14.3088
CGCUGGC	chr2:98262443-98262753(+)$1	310	137	144	12.9117
cgcugcc	chrX:20284611-20284896(-)$1	285	13	20	17.1764
CGCUGGC	chr1:155145221-155145466(-)$1	245	116	123	12.9117
UGCUGCC	chr1:155036145-155036513(+)$1	368	161	168	13.5735
UGCUGCC	chr8:30585181-30585447(-)$1	266	102	109	13.5735
CGCGGCC	chr20:30102164-30102469(+)$1	305	257	264	14.4558
CGCUUCC	chr19:47551666-47551908(-)$1	242	84	91	12.7647
CGCUGCC	chr18:29522619-29522873(-)$1	254	127	134	17.1764
GGCUGCC	chr2:27430220-27430494(-)$1	274	174	181	13.7941
CGCCGCC	chr2:171785733-171786011(+)$1	278	110	117	14.2352
CGCCGCC	chr8:8750456-8750692(-)$1	236	174	181	14.2352
GGCUGCC	chr7:5327339-5327601(+)$1	262	101	108	13.7941
cgcagcc	chr9:139137368-139137639(-)$1	271	17	24	14.3088
CGCUGCC	chr6:170893414-170893716(-)$1	302	246	253	17.1764
CGCUGCC	chr16:2569117-2569350(+)$1	233	108	115	17.1764
CGCAGCC	chr12:120907303-120907610(-)$1	307	14	21	14.3088
cgcggcc	chr1:220267513-220267809(+)$1	296	77	84	14.4558
CGCAGCC	chr16:88815694-88815950(-)$1	256	58	65	14.3088
GGCUGCC	chr5:134210102-134210323(+)$1	221	23	30	13.7941
CGCUGGC	chr2:220408144-220408412(-)$1	268	5	12	12.9117
CGCAGCC	chr9:34372557-34372881(-)$1	324	29	36	14.3088
GGCUGCC	chr7:2671766-2672009(+)$1	243	72	79	13.7941
AGCUGCC	chr11:66313180-66313457(-)$1	277	29	36	13.2794
CGCAGCC	chr7:44621240-44621479(-)$1	239	178	185	14.3088
CGCUCCC	chr16:75033426-75033685(+)$1	259	170	177	12.6911
CGCUUCC	chr11:62446271-62446619(-)$1	348	57	64	12.7647
CGCUGCC	chr16:2264521-2264786(-)$1	265	229	236	17.1764
CGGUGCC	chr2:216300392-216300626(-)$1	234	159	166	12.4705
CGCUGCC	chr17:4844110-4844389(+)$1	279	87	94	17.1764

#otherMatches

#Struct PSSM
JJJJJJJ	chr4:1242605-1242881(-)$1	276	117	124	14.4558
]ccc]bb	chr19:2456705-2457031(-)$1	326	170	177	17.1764
DDDD{CC	chr9:139581601-139581954(-)$1	353	2	9	12.7647
FFFFFZZ	chr1:116915980-116916235(+)$1	255	239	246	14.4558
JJJJJYY	chr17:73760969-73761372(-)$1	403	309	316	13.5735
GGG}DDD	chr17:635834-636106(+)$1	272	212	219	17.1764
{EEEEEK	chr7:97910975-97911215(+)$1	240	56	63	14.2352
f======	chrX:21857764-21858027(+)$1	263	78	85	17.1764
blllbb]	chr1:94883871-94884154(+)$1	283	45	52	14.4558
bbmmmmb	chr8:125551385-125551628(+)$1	243	16	23	14.4558
cccffff	chr3:124774615-124774892(-)$1	277	91	98	17.1764
lffffff	chrX:68836041-68836369(+)$1	328	200	207	12.7647
::::FFF	chr1:160068096-160068385(-)$1	289	18	25	17.1764
ggggg!!	chr9:136234127-136234370(-)$1	243	11	18	14.3088
mmmhhhh	chr3:53164257-53164547(-)$1	290	157	164	14.4558
tteeeee	chr20:5154094-5154406(+)$1	312	144	151	12.7647
{FFFFFF	chrX:20284586-20284811(-)$1	225	65	72	12.9117
[bb[ddd	chr20:8000059-8000331(-)$1	272	21	28	17.1764
E{EEEEE	chr22:45898775-45899045(+)$1	270	26	33	17.1764
ooooocc	chr8:38126541-38126812(-)$1	271	18	25	12.4705
:GGGGGG	chr1:27320418-27320687(+)$1	269	16	23	17.1764
ffffddd	chr8:98788157-98788431(+)$1	274	131	138	13.5735
ffff]bb	chr7:150033965-150034216(+)$1	251	123	130	13.7941
:::::DD	chr21:46359864-46360203(+)$1	339	146	153	13.7941
:DDDDKK	chr17:76921038-76921281(-)$1	243	45	52	14.2352
:bb[eee	chr2:27008966-27009215(+)$1	249	31	38	12.6911
b!!ffff	chr19:1848121-1848413(-)$1	292	122	129	12.7647
C{EEEEE	chr4:77996534-77996793(-)$1	259	5	12	12.7647
[ccc[a[	chr19:19006700-19007012(-)$1	312	219	226	12.9117
]ccc]bb	chr16:765180-765488(+)$1	308	32	39	14.2352
ffffff:	chr7:127228468-127228720(+)$1	252	21	28	14.4558
KJJJJJJ	chr2:27255749-27256103(+)$1	354	10	17	13.7941
:ffffff	chr2:239335560-239335861(+)$1	301	210	217	14.4558
[bb[bb[	chr2:160654541-160654805(-)$1	264	69	76	17.1764
]eeeeeE	chr11:64879916-64880198(+)$1	282	91	98	13.5735
EE::fff	chr3:145878675-145878975(-)$1	300	57	64	13.7941
iiiiiii	chr17:39968003-39968315(-)$1	312	64	71	14.2352
hha[ccc	chr3:51428677-51428944(+)$1	267	76	83	17.1764
CCDDDD{	chr16:70285648-70285912(-)$1	264	24	31	14.3088
ddddggg	chr2:98262443-98262753(+)$1	310	137	144	12.9117
ddd!!ee	chrX:20284611-20284896(-)$1	285	13	20	17.1764
:gggggg	chr1:155145221-155145466(-)$1	245	116	123	12.9117
ee!!hhh	chr1:155036145-155036513(+)$1	368	161	168	13.5735
rrrrrrr	chr8:30585181-30585447(-)$1	266	102	109	13.5735
:dddd!!	chr20:30102164-30102469(+)$1	305	257	264	14.4558
hhhhhhh	chr19:47551666-47551908(-)$1	242	84	91	12.7647
fff[bbm	chr18:29522619-29522873(-)$1	254	127	134	17.1764
bbeeeee	chr2:27430220-27430494(-)$1	274	174	181	13.7941
d[eeeee	chr2:171785733-171786011(+)$1	278	110	117	14.2352
a]bb:FF	chr8:8750456-8750692(-)$1	236	174	181	14.2352
==fffff	chr7:5327339-5327601(+)$1	262	101	108	13.7941
cc[ccce	chr9:139137368-139137639(-)$1	271	17	24	14.3088
ffffffa	chr6:170893414-170893716(-)$1	302	246	253	17.1764
beeeeeb	chr16:2569117-2569350(+)$1	233	108	115	17.1764
DDD{III	chr12:120907303-120907610(-)$1	307	14	21	14.3088
=======	chr1:220267513-220267809(+)$1	296	77	84	14.4558
:EEEEEK	chr16:88815694-88815950(-)$1	256	58	65	14.3088
BJJJJJJ	chr5:134210102-134210323(+)$1	221	23	30	13.7941
DDDGGGG	chr2:220408144-220408412(-)$1	268	5	12	12.9117
CCC{DDD	chr9:34372557-34372881(-)$1	324	29	36	14.3088
iiiiiii	chr7:2671766-2672009(+)$1	243	72	79	13.7941
pbb]eee	chr11:66313180-66313457(-)$1	277	29	36	13.2794
cceeeee	chr7:44621240-44621479(-)$1	239	178	185	14.3088
ee$$$$$	chr16:75033426-75033685(+)$1	259	170	177	12.6911
eeeee[a	chr11:62446271-62446619(-)$1	348	57	64	12.7647
HHHHHHH	chr16:2264521-2264786(-)$1	265	229	236	17.1764
mmbb]cc	chr2:216300392-216300626(-)$1	234	159	166	12.4705
CC:cccl	chr17:4844110-4844389(+)$1	279	87	94	17.1764

#DB
(((((((	chr4:1242605-1242881(-)$1	1	117	124	14.4558
.))).))	chr19:2456705-2457031(-)$1	1	170	177	17.1764
((((.((	chr9:139581601-139581954(-)$1	1	2	9	12.7647
)))))..	chr1:116915980-116916235(+)$1	1	239	246	14.4558
)))))..	chr17:73760969-73761372(-)$1	1	309	316	13.5735
))).)))	chr17:635834-636106(+)$1	1	212	219	17.1764
.(((((.	chr7:97910975-97911215(+)$1	1	56	63	14.2352
(((((((	chrX:21857764-21858027(+)$1	1	78	85	17.1764
(...)).	chr1:94883871-94884154(+)$1	1	45	52	14.4558
((....)	chr8:125551385-125551628(+)$1	1	16	23	14.4558
(((((((	chr3:124774615-124774892(-)$1	1	91	98	17.1764
.))))))	chrX:68836041-68836369(+)$1	1	200	207	12.7647
....(((	chr1:160068096-160068385(-)$1	1	18	25	17.1764
(((((..	chr9:136234127-136234370(-)$1	1	11	18	14.3088
...))))	chr3:53164257-53164547(-)$1	1	157	164	14.4558
..)))))	chr20:5154094-5154406(+)$1	1	144	151	12.7647
.((((((	chrX:20284586-20284811(-)$1	1	65	72	12.9117
.((.(((	chr20:8000059-8000331(-)$1	1	21	28	17.1764
(.(((((	chr22:45898775-45899045(+)$1	1	26	33	17.1764
.....))	chr8:38126541-38126812(-)$1	1	18	25	12.4705
.((((((	chr1:27320418-27320687(+)$1	1	16	23	17.1764
(((((((	chr8:98788157-98788431(+)$1	1	131	138	13.5735
)))).))	chr7:150033965-150034216(+)$1	1	123	130	13.7941
.....))	chr21:46359864-46360203(+)$1	1	146	153	13.7941
.((((..	chr17:76921038-76921281(-)$1	1	45	52	14.2352
.((.(((	chr2:27008966-27009215(+)$1	1	31	38	12.6911
(..((((	chr19:1848121-1848413(-)$1	1	122	129	12.7647
(.(((((	chr4:77996534-77996793(-)$1	1	5	12	12.7647
.(((.(.	chr19:19006700-19007012(-)$1	1	219	226	12.9117
.))).))	chr16:765180-765488(+)$1	1	32	39	14.2352
)))))).	chr7:127228468-127228720(+)$1	1	21	28	14.4558
.((((((	chr2:27255749-27256103(+)$1	1	10	17	13.7941
.((((((	chr2:239335560-239335861(+)$1	1	210	217	14.4558
.((.((.	chr2:160654541-160654805(-)$1	1	69	76	17.1764
.))))))	chr11:64879916-64880198(+)$1	1	91	98	13.5735
((..(((	chr3:145878675-145878975(-)$1	1	57	64	13.7941
(((((((	chr17:39968003-39968315(-)$1	1	64	71	14.2352
(((.(((	chr3:51428677-51428944(+)$1	1	76	83	17.1764
((((((.	chr16:70285648-70285912(-)$1	1	24	31	14.3088
(((((((	chr2:98262443-98262753(+)$1	1	137	144	12.9117
(((..((	chrX:20284611-20284896(-)$1	1	13	20	17.1764
.((((((	chr1:155145221-155145466(-)$1	1	116	123	12.9117
((..(((	chr1:155036145-155036513(+)$1	1	161	168	13.5735
.......	chr8:30585181-30585447(-)$1	1	102	109	13.5735
.((((..	chr20:30102164-30102469(+)$1	1	257	264	14.4558
)))))))	chr19:47551666-47551908(-)$1	1	84	91	12.7647
(((.((.	chr18:29522619-29522873(-)$1	1	127	134	17.1764
)))))))	chr2:27430220-27430494(-)$1	1	174	181	13.7941
(.(((((	chr2:171785733-171786011(+)$1	1	110	117	14.2352
).)).))	chr8:8750456-8750692(-)$1	1	174	181	14.2352
))(((((	chr7:5327339-5327601(+)$1	1	101	108	13.7941
((.((((	chr9:139137368-139137639(-)$1	1	17	24	14.3088
)))))))	chr6:170893414-170893716(-)$1	1	246	253	17.1764
)((((((	chr16:2569117-2569350(+)$1	1	108	115	17.1764
(((.(((	chr12:120907303-120907610(-)$1	1	14	21	14.3088
)))))))	chr1:220267513-220267809(+)$1	1	77	84	14.4558
.(((((.	chr16:88815694-88815950(-)$1	1	58	65	14.3088
(((((((	chr5:134210102-134210323(+)$1	1	23	30	13.7941
(((((((	chr2:220408144-220408412(-)$1	1	5	12	12.9117
(((.(((	chr9:34372557-34372881(-)$1	1	29	36	14.3088
)))))))	chr7:2671766-2672009(+)$1	1	72	79	13.7941
.)).)))	chr11:66313180-66313457(-)$1	1	29	36	13.2794
)))))))	chr7:44621240-44621479(-)$1	1	178	185	14.3088
((.....	chr16:75033426-75033685(+)$1	1	170	177	12.6911
(((((.(	chr11:62446271-62446619(-)$1	1	57	64	12.7647
)))))))	chr16:2264521-2264786(-)$1	1	229	236	17.1764
..)).))	chr2:216300392-216300626(-)$1	1	159	166	12.4705
((.(((.	chr17:4844110-4844389(+)$1	1	87	94	17.1764

#PSSM
C : 0.58	c : 0.20	G : 0.11	U : 0.07	A : 0.01	
G : 0.74	g : 0.19	C : 0.04	c : 0.01	
C : 0.76	c : 0.20	G : 0.02	
U : 0.57	G : 0.10	u : 0.10	A : 0.08	c : 0.05	g : 0.02	C : 0.02	a : 0.01	
G : 0.70	g : 0.22	U : 0.04	C : 0.02	
C : 0.72	c : 0.20	G : 0.05	g : 0.01	
C : 0.77	c : 0.22	

#score	986.2352941176456
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_transcript_m3_run2.nuc.txt

#NT
UUU	chr8:30436154-30436442(-)$1	288	12	15	8.9999
UUU	chr2:27264014-27264291(+)$1	277	5	8	8.9999
UUU	chr10:70863980-70864242(+)$1	262	22	25	8.9999
UUU	chr5:162870943-162871172(+)$1	229	6	9	8.9999
UUU	chr6:36823158-36823446(-)$1	288	13	16	8.9999
UUU	chr2:152659022-152659281(-)$1	259	80	83	8.9999
UUU	chr1:150783224-150783498(-)$1	274	6	9	8.9999
UUU	chr15:66180326-66180577(+)$1	251	35	38	8.9999
UUU	chrX:118378050-118378352(+)$1	302	3	6	8.9999
UUU	chr9:110086122-110086398(+)$1	276	9	12	8.9999
UUU	chr7:92243112-92243383(-)$1	271	6	9	8.9999
uuu	chr11:5362217-5362573(-)$1	356	137	140	8.9999
UUU	chr2:70165513-70165776(+)$1	263	28	31	8.9999
UUU	chr12:49521529-49521748(-)$1	219	19	22	8.9999
UUU	chr12:121134925-121135193(+)$1	268	16	19	8.9999
UUU	chr4:77955974-77956251(+)$1	277	92	95	8.9999
UUU	chr7:16501760-16502047(-)$1	287	32	35	8.9999
UUU	chr2:136437711-136437994(+)$1	283	18	21	8.9999
UUU	chr11:73388627-73388842(-)$1	215	93	96	8.9999
UUU	chr17:40023084-40023365(-)$1	281	32	35	8.9999
UUU	chr7:77256288-77256549(+)$1	261	6	9	8.9999
UUU	chr2:74383379-74383642(-)$1	263	36	39	8.9999
uuu	chr16:89030979-89031297(-)$1	318	215	218	8.9999
uuu	chr6:26138747-26138983(+)$1	236	0	3	8.9999
UUU	chr6:64395335-64395668(+)$1	333	39	42	8.9999
UUU	chr20:463802-464067(-)$1	265	5	8	8.9999
UUU	chr17:79890256-79890492(-)$1	236	34	37	8.9999
UUU	chr14:102349670-102349915(+)$1	245	4	7	8.9999
UUU	chr2:62105962-62106245(-)$1	283	1	4	8.9999
UUU	chr8:101721629-101721863(-)$1	234	29	32	8.9999
UUU	chr1:67878332-67878584(-)$1	252	33	36	8.9999
UUU	chr17:30692383-30692599(+)$1	216	22	25	8.9999
UUU	chr14:23548719-23549071(-)$1	352	6	9	8.9999
UUU	chr3:5026190-5026447(+)$1	257	86	89	8.9999
UUU	chr9:101979859-101980122(-)$1	263	6	9	8.9999
UUU	chr5:137771416-137771701(+)$1	285	10	13	8.9999
UUU	chr2:96852052-96852331(-)$1	279	9	12	8.9999
UUU	chr2:97007707-97007979(+)$1	272	18	21	8.9999
UUU	chr1:25687995-25688279(+)$1	284	6	9	8.9999
UUU	chr12:123745522-123745904(-)$1	382	7	10	8.9999
UUU	chr4:103722553-103722795(-)$1	242	12	15	8.9999
uuu	chr12:49330644-49330929(-)$1	285	129	132	8.9999
UUU	chr3:113529689-113529954(+)$1	265	4	7	8.9999
UUU	chr5:72192185-72192483(+)$1	298	0	3	8.9999
UUU	chr17:40277502-40277761(-)$1	259	87	90	8.9999
UUU	chr5:85916393-85916671(+)$1	278	14	17	8.9999
UUU	chr6:35801952-35802214(-)$1	262	25	28	8.9999
UUU	chr6:31603955-31604221(+)$1	266	5	8	8.9999
UUU	chr8:54879578-54879846(-)$1	268	24	27	8.9999
UUU	chr16:68156878-68157117(+)$1	239	53	56	8.9999
UUU	chrX:30873000-30873252(-)$1	252	106	109	8.9999
UUU	chr5:179264025-179264289(+)$1	264	83	86	8.9999
UUU	chr4:99801817-99802093(-)$1	276	11	14	8.9999
UUU	chr17:46940494-46940778(+)$1	284	75	78	8.9999
UUU	chr12:57005913-57006131(-)$1	218	8	11	8.9999
UUU	chr1:183514203-183514483(+)$1	280	111	114	8.9999
UUU	chr6:38644776-38644997(-)$1	221	50	53	8.9999
UUU	chr12:54745198-54745446(+)$1	248	16	19	8.9999
UUU	chr20:56083623-56083913(-)$1	290	29	32	8.9999
UUU	chr3:150260952-150261196(-)$1	244	16	19	8.9999
UUU	chr1:29443877-29444123(+)$1	246	18	21	8.9999
UUU	chr10:17279301-17279553(+)$1	252	43	46	8.9999
UUU	chr11:5362431-5362702(-)$1	271	18	21	8.9999
UUU	chr14:54893998-54894292(-)$1	294	17	20	8.9999
UUU	chr2:69650662-69650951(-)$1	289	250	253	8.9999
UUU	chr3:47627417-47627704(-)$1	287	0	3	8.9999
UUU	chr7:128410717-128410963(+)$1	246	4	7	8.9999
UUU	chr22:22116706-22116982(-)$1	276	3	6	8.9999
UUU	chr1:53516716-53516980(+)$1	264	26	29	8.9999
UUU	chr1:171482032-171482268(+)$1	236	25	28	8.9999
UUU	chr2:48131560-48131835(-)$1	275	33	36	8.9999
UUU	chr1:202910407-202910656(-)$1	249	13	16	8.9999
UUU	chr3:20194539-20194817(+)$1	278	23	26	8.9999
UUU	chr16:18804073-18804334(-)$1	261	0	3	8.9999
UUU	chr15:66829429-66829689(+)$1	260	5	8	8.9999
UUU	chr8:130854214-130854528(-)$1	314	32	35	8.9999
UUU	chr6:89793842-89794139(+)$1	297	74	77	8.9999
UUU	chr2:183789789-183790051(-)$1	262	0	3	8.9999
UUU	chr15:41572291-41572540(+)$1	249	18	21	8.9999
UUU	chr2:47387504-47387779(-)$1	275	6	9	8.9999
UUU	chr8:17125664-17125943(+)$1	279	4	7	8.9999
UUU	chr5:162871574-162871803(+)$1	229	97	100	8.9999
uuu	chr8:109240416-109240640(-)$1	224	4	7	8.9999
UUU	chr6:36891847-36892135(+)$1	288	29	32	8.9999
UUU	chr9:134135946-134136231(-)$1	285	197	200	8.9999
UUU	chr6:43528558-43528791(-)$1	233	4	7	8.9999
UUU	chr6:119498486-119498733(-)$1	247	6	9	8.9999
UUU	chr9:130952988-130953238(-)$1	250	84	87	8.9999
UUU	chr3:191109519-191109902(+)$1	383	11	14	8.9999
uuu	chr14:75600216-75600475(-)$1	259	31	34	8.9999
UUU	chr8:54960209-54960461(-)$1	252	7	10	8.9999
UUU	chr15:42823817-42824060(+)$1	243	90	93	8.9999
UUU	chr6:116565017-116565315(+)$1	298	228	231	8.9999

#otherMatches

#Struct PSSM
EEE	chr18:44682176-44682485(-)$1	309	12	15	8.9999
hhh	chr8:30436154-30436442(-)$1	288	12	15	8.9999
HHH	chr2:27264014-27264291(+)$1	277	5	8	8.9999
GGG	chr10:70863980-70864242(+)$1	262	22	25	8.9999
:::	chr5:162870943-162871172(+)$1	229	6	9	8.9999
bbn	chr6:36823158-36823446(-)$1	288	13	16	8.9999
444	chr2:152659022-152659281(-)$1	259	80	83	8.9999
iii	chr1:150783224-150783498(-)$1	274	6	9	8.9999
ccc	chr15:66180326-66180577(+)$1	251	35	38	8.9999
d!!	chrX:118378050-118378352(+)$1	302	3	6	8.9999
DDD	chr9:110086122-110086398(+)$1	276	9	12	8.9999
:::	chr7:92243112-92243383(-)$1	271	6	9	8.9999
qqq	chr11:5362217-5362573(-)$1	356	137	140	8.9999
qqq	chr2:70165513-70165776(+)$1	263	28	31	8.9999
GGG	chr12:49521529-49521748(-)$1	219	19	22	8.9999
nnn	chr12:121134925-121135193(+)$1	268	16	19	8.9999
B:g	chr4:77955974-77956251(+)$1	277	92	95	8.9999
DDD	chr7:16501760-16502047(-)$1	287	32	35	8.9999
fff	chr2:136437711-136437994(+)$1	283	18	21	8.9999
+++	chr11:73388627-73388842(-)$1	215	93	96	8.9999
mmm	chr17:40023084-40023365(-)$1	281	32	35	8.9999
fmm	chr7:77256288-77256549(+)$1	261	6	9	8.9999
::D	chr2:74383379-74383642(-)$1	263	36	39	8.9999
eee	chr16:89030979-89031297(-)$1	318	215	218	8.9999
:EE	chr6:26138747-26138983(+)$1	236	0	3	8.9999
hhh	chr6:64395335-64395668(+)$1	333	39	42	8.9999
:::	chr20:463802-464067(-)$1	265	5	8	8.9999
===	chr17:79890256-79890492(-)$1	236	34	37	8.9999
===	chr14:102349670-102349915(+)$1	245	4	7	8.9999
:::	chr2:62105962-62106245(-)$1	283	1	4	8.9999
$$$	chr8:101721629-101721863(-)$1	234	29	32	8.9999
===	chr1:67878332-67878584(-)$1	252	33	36	8.9999
ff"	chr17:30692383-30692599(+)$1	216	22	25	8.9999
eee	chr14:23548719-23549071(-)$1	352	6	9	8.9999
===	chr3:5026190-5026447(+)$1	257	86	89	8.9999
ccx	chr9:101979859-101980122(-)$1	263	6	9	8.9999
:::	chr5:137771416-137771701(+)$1	285	10	13	8.9999
:::	chr2:96852052-96852331(-)$1	279	9	12	8.9999
g""	chr2:97007707-97007979(+)$1	272	18	21	8.9999
HHH	chr1:25687995-25688279(+)$1	284	6	9	8.9999
HHH	chr12:123745522-123745904(-)$1	382	7	10	8.9999
nng	chr4:103722553-103722795(-)$1	242	12	15	8.9999
:::	chr12:49330644-49330929(-)$1	285	129	132	8.9999
DNN	chr3:113529689-113529954(+)$1	265	4	7	8.9999
:::	chr5:72192185-72192483(+)$1	298	0	3	8.9999
ffx	chr17:40277502-40277761(-)$1	259	87	90	8.9999
%%%	chr5:85916393-85916671(+)$1	278	14	17	8.9999
!!f	chr6:35801952-35802214(-)$1	262	25	28	8.9999
:::	chr6:31603955-31604221(+)$1	266	5	8	8.9999
fff	chr8:54879578-54879846(-)$1	268	24	27	8.9999
zzz	chr16:68156878-68157117(+)$1	239	53	56	8.9999
dd#	chrX:30873000-30873252(-)$1	252	106	109	8.9999
fff	chr5:179264025-179264289(+)$1	264	83	86	8.9999
NNN	chr4:99801817-99802093(-)$1	276	11	14	8.9999
GGG	chr17:46940494-46940778(+)$1	284	75	78	8.9999
uuu	chr12:57005913-57006131(-)$1	218	8	11	8.9999
:::	chr1:183514203-183514483(+)$1	280	111	114	8.9999
:::	chr6:38644776-38644997(-)$1	221	50	53	8.9999
FFF	chr12:54745198-54745446(+)$1	248	16	19	8.9999
eee	chr20:56083623-56083913(-)$1	290	29	32	8.9999
"""	chr3:150260952-150261196(-)$1	244	16	19	8.9999
rrr	chr1:29443877-29444123(+)$1	246	18	21	8.9999
qqq	chr10:17279301-17279553(+)$1	252	43	46	8.9999
nnn	chr11:5362431-5362702(-)$1	271	18	21	8.9999
emm	chr14:54893998-54894292(-)$1	294	17	20	8.9999
}II	chr2:69650662-69650951(-)$1	289	250	253	8.9999
:::	chr3:47627417-47627704(-)$1	287	0	3	8.9999
:::	chr7:128410717-128410963(+)$1	246	4	7	8.9999
::c	chr22:22116706-22116982(-)$1	276	3	6	8.9999
e33	chr1:53516716-53516980(+)$1	264	26	29	8.9999
hhh	chr1:171482032-171482268(+)$1	236	25	28	8.9999
eoo	chr2:48131560-48131835(-)$1	275	33	36	8.9999
ooo	chr1:202910407-202910656(-)$1	249	13	16	8.9999
c!!	chr3:20194539-20194817(+)$1	278	23	26	8.9999
:::	chr16:18804073-18804334(-)$1	261	0	3	8.9999
FF{	chr15:66829429-66829689(+)$1	260	5	8	8.9999
!!e	chr8:130854214-130854528(-)$1	314	32	35	8.9999
eel	chr6:89793842-89794139(+)$1	297	74	77	8.9999
:::	chr2:183789789-183790051(-)$1	262	0	3	8.9999
{DD	chr15:41572291-41572540(+)$1	249	18	21	8.9999
DDD	chr2:47387504-47387779(-)$1	275	6	9	8.9999
KKD	chr8:17125664-17125943(+)$1	279	4	7	8.9999
hhh	chr5:162871574-162871803(+)$1	229	97	100	8.9999
HHH	chr8:109240416-109240640(-)$1	224	4	7	8.9999
qqd	chr6:36891847-36892135(+)$1	288	29	32	8.9999
fll	chr9:134135946-134136231(-)$1	285	197	200	8.9999
:::	chr6:43528558-43528791(-)$1	233	4	7	8.9999
:::	chr6:119498486-119498733(-)$1	247	6	9	8.9999
===	chr9:130952988-130953238(-)$1	250	84	87	8.9999
ggg	chr3:191109519-191109902(+)$1	383	11	14	8.9999
PPP	chr14:75600216-75600475(-)$1	259	31	34	8.9999
ff#	chr8:54960209-54960461(-)$1	252	7	10	8.9999
===	chr15:42823817-42824060(+)$1	243	90	93	8.9999
FFF	chr6:116565017-116565315(+)$1	298	228	231	8.9999

#DB
(((	chr18:44682176-44682485(-)$1	1	12	15	8.9999
(((	chr8:30436154-30436442(-)$1	1	12	15	8.9999
(((	chr2:27264014-27264291(+)$1	1	5	8	8.9999
(((	chr10:70863980-70864242(+)$1	1	22	25	8.9999
...	chr5:162870943-162871172(+)$1	1	6	9	8.9999
((.	chr6:36823158-36823446(-)$1	1	13	16	8.9999
...	chr2:152659022-152659281(-)$1	1	80	83	8.9999
(((	chr1:150783224-150783498(-)$1	1	6	9	8.9999
(((	chr15:66180326-66180577(+)$1	1	35	38	8.9999
(..	chrX:118378050-118378352(+)$1	1	3	6	8.9999
(((	chr9:110086122-110086398(+)$1	1	9	12	8.9999
...	chr7:92243112-92243383(-)$1	1	6	9	8.9999
...	chr11:5362217-5362573(-)$1	1	137	140	8.9999
...	chr2:70165513-70165776(+)$1	1	28	31	8.9999
(((	chr12:49521529-49521748(-)$1	1	19	22	8.9999
...	chr12:121134925-121135193(+)$1	1	16	19	8.9999
(.(	chr4:77955974-77956251(+)$1	1	92	95	8.9999
(((	chr7:16501760-16502047(-)$1	1	32	35	8.9999
)))	chr2:136437711-136437994(+)$1	1	18	21	8.9999
...	chr11:73388627-73388842(-)$1	1	93	96	8.9999
...	chr17:40023084-40023365(-)$1	1	32	35	8.9999
(..	chr7:77256288-77256549(+)$1	1	6	9	8.9999
..(	chr2:74383379-74383642(-)$1	1	36	39	8.9999
)))	chr16:89030979-89031297(-)$1	1	215	218	8.9999
.((	chr6:26138747-26138983(+)$1	1	0	3	8.9999
)))	chr6:64395335-64395668(+)$1	1	39	42	8.9999
...	chr20:463802-464067(-)$1	1	5	8	8.9999
)))	chr17:79890256-79890492(-)$1	1	34	37	8.9999
(((	chr14:102349670-102349915(+)$1	1	4	7	8.9999
...	chr2:62105962-62106245(-)$1	1	1	4	8.9999
...	chr8:101721629-101721863(-)$1	1	29	32	8.9999
(((	chr1:67878332-67878584(-)$1	1	33	36	8.9999
((.	chr17:30692383-30692599(+)$1	1	22	25	8.9999
(((	chr14:23548719-23549071(-)$1	1	6	9	8.9999
)))	chr3:5026190-5026447(+)$1	1	86	89	8.9999
((.	chr9:101979859-101980122(-)$1	1	6	9	8.9999
...	chr5:137771416-137771701(+)$1	1	10	13	8.9999
...	chr2:96852052-96852331(-)$1	1	9	12	8.9999
(..	chr2:97007707-97007979(+)$1	1	18	21	8.9999
(((	chr1:25687995-25688279(+)$1	1	6	9	8.9999
(((	chr12:123745522-123745904(-)$1	1	7	10	8.9999
..)	chr4:103722553-103722795(-)$1	1	12	15	8.9999
...	chr12:49330644-49330929(-)$1	1	129	132	8.9999
(..	chr3:113529689-113529954(+)$1	1	4	7	8.9999
...	chr5:72192185-72192483(+)$1	1	0	3	8.9999
((.	chr17:40277502-40277761(-)$1	1	87	90	8.9999
...	chr5:85916393-85916671(+)$1	1	14	17	8.9999
..(	chr6:35801952-35802214(-)$1	1	25	28	8.9999
...	chr6:31603955-31604221(+)$1	1	5	8	8.9999
)))	chr8:54879578-54879846(-)$1	1	24	27	8.9999
...	chr16:68156878-68157117(+)$1	1	53	56	8.9999
((.	chrX:30873000-30873252(-)$1	1	106	109	8.9999
(((	chr5:179264025-179264289(+)$1	1	83	86	8.9999
...	chr4:99801817-99802093(-)$1	1	11	14	8.9999
)))	chr17:46940494-46940778(+)$1	1	75	78	8.9999
...	chr12:57005913-57006131(-)$1	1	8	11	8.9999
...	chr1:183514203-183514483(+)$1	1	111	114	8.9999
...	chr6:38644776-38644997(-)$1	1	50	53	8.9999
(((	chr12:54745198-54745446(+)$1	1	16	19	8.9999
)))	chr20:56083623-56083913(-)$1	1	29	32	8.9999
...	chr3:150260952-150261196(-)$1	1	16	19	8.9999
...	chr1:29443877-29444123(+)$1	1	18	21	8.9999
...	chr10:17279301-17279553(+)$1	1	43	46	8.9999
...	chr11:5362431-5362702(-)$1	1	18	21	8.9999
(..	chr14:54893998-54894292(-)$1	1	17	20	8.9999
.))	chr2:69650662-69650951(-)$1	1	250	253	8.9999
...	chr3:47627417-47627704(-)$1	1	0	3	8.9999
...	chr7:128410717-128410963(+)$1	1	4	7	8.9999
..(	chr22:22116706-22116982(-)$1	1	3	6	8.9999
)..	chr1:53516716-53516980(+)$1	1	26	29	8.9999
(((	chr1:171482032-171482268(+)$1	1	25	28	8.9999
(..	chr2:48131560-48131835(-)$1	1	33	36	8.9999
...	chr1:202910407-202910656(-)$1	1	13	16	8.9999
(..	chr3:20194539-20194817(+)$1	1	23	26	8.9999
...	chr16:18804073-18804334(-)$1	1	0	3	8.9999
((.	chr15:66829429-66829689(+)$1	1	5	8	8.9999
..(	chr8:130854214-130854528(-)$1	1	32	35	8.9999
((.	chr6:89793842-89794139(+)$1	1	74	77	8.9999
...	chr2:183789789-183790051(-)$1	1	0	3	8.9999
.((	chr15:41572291-41572540(+)$1	1	18	21	8.9999
(((	chr2:47387504-47387779(-)$1	1	6	9	8.9999
..(	chr8:17125664-17125943(+)$1	1	4	7	8.9999
)))	chr5:162871574-162871803(+)$1	1	97	100	8.9999
(((	chr8:109240416-109240640(-)$1	1	4	7	8.9999
..)	chr6:36891847-36892135(+)$1	1	29	32	8.9999
(..	chr9:134135946-134136231(-)$1	1	197	200	8.9999
...	chr6:43528558-43528791(-)$1	1	4	7	8.9999
...	chr6:119498486-119498733(-)$1	1	6	9	8.9999
)))	chr9:130952988-130953238(-)$1	1	84	87	8.9999
(((	chr3:191109519-191109902(+)$1	1	11	14	8.9999
...	chr14:75600216-75600475(-)$1	1	31	34	8.9999
((.	chr8:54960209-54960461(-)$1	1	7	10	8.9999
)))	chr15:42823817-42824060(+)$1	1	90	93	8.9999
)))	chr6:116565017-116565315(+)$1	1	228	231	8.9999

#PSSM
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	

#score	845.9999999999998
#seq	94
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_UTR_m3_run2.nuc.txt

#NT
ccggcgccccgcccgagc	chr12:125051859-125052113(-)$1	254	27	45	20.1000
CCCGCUCCGCCCGCAGGC	chr22:21983237-21983519(-)$1	282	27	45	21.9000
CCCGCCCCGCUAGUGGGC	chr5:154135053-154135313(+)$1	260	60	78	15.3000
ccgccgccgccgccgccc	chr2:10588299-10588552(-)$1	253	116	134	22.0000
uccgcgccgccgccgcgc	chr1:1284352-1284629(-)$1	277	165	183	24.3000
CCCGUUCCCCCUcccggc	chr17:7154514-7154776(-)$1	262	66	84	15.8000
CCGCCGGCGCCCGAGGGC	chr5:154135174-154135469(+)$1	295	230	248	17.7000
caggcacgggccccgggc	chr19:2151268-2151556(-)$1	288	149	167	15.4000
ugggcggcgcccccgggc	chr3:128211703-128211981(+)$1	278	52	70	18.7000
cccgggccccccccgAGC	chr19:54971701-54971950(+)$1	249	69	87	22.4000
cccgcggcccccgccgcc	chr19:59056284-59056560(+)$1	276	119	137	17.0000
gccgcgccgccccgcggA	chr19:1205989-1206266(+)$1	277	69	87	19.4000
CCCGGGCGGCCACCGCGC	chr3:133465149-133465428(+)$1	279	234	252	21.1000
gccgggccgccccggggg	chr7:150778160-150778462(-)$1	302	109	127	19.7000
ccuccgccgccgccAGCC	chr1:27022570-27022816(+)$1	246	124	142	19.4000
CCACCGCCGCCGCCGGGG	chr2:159313482-159313804(+)$1	322	65	83	22.3000
cccgcgcggggccggcgc	chr15:91445894-91446143(+)$1	249	103	121	16.6000
cccgcgccgcccccgggc	chr7:5634090-5634325(+)$1	235	119	137	31.8000
gcagcgccggcccggggc	chr12:116714992-116715235(-)$1	243	68	86	18.3000
GCCCCGCCGCCCGCCGCC	chr19:4038174-4038426(+)$1	252	51	69	18.2000
ccggggcacccccccggc	chr19:41859577-41859817(-)$1	240	92	110	17.6000
ccgccgccgccgccgccc	chr2:10588220-10588472(-)$1	252	36	54	22.0000
CCCGCGGCCCCGCCCCGG	chr6:42981911-42982182(+)$1	271	144	162	15.8000
ccgccgccgccgccgccc	chr12:123756066-123756314(-)$1	248	85	103	22.0000
cucgcgccgcagcccggc	chr22:19711744-19712005(+)$1	261	172	190	19.8000
cccgcgccaccggcgccc	chr17:80477550-80477817(+)$1	267	162	180	19.3000
cccgcgccuccccggccc	chr16:23847341-23847639(+)$1	298	74	92	21.0000
CCCGCGGCGCCGCCUGAC	chr19:18530345-18530622(+)$1	277	60	78	19.9000
cccgcgccgccgccgccg	chr16:89556637-89556892(-)$1	255	111	129	23.3000
CCCGAgccgccgccgccg	chrX:152953467-152953738(+)$1	271	14	32	19.7000
CCCGCGAGCCUCCCGGAC	chr11:62368813-62369055(-)$1	242	79	97	14.5000
CUCCGGCGGCCCCCGGGC	chrX:153686584-153686856(+)$1	272	12	30	20.1000
accgcgcggcucgcgggc	chr10:105727017-105727340(+)$1	323	246	264	18.5000
CCCGCCCGGCCGCCGGGA	chr1:215740736-215741034(+)$1	298	125	143	20.8000
CGCGCGCCGACCCGGCGC	chr7:5569341-5569637(-)$1	296	75	93	19.1000
gccgcgccgccccgcggA	chr19:1205896-1206156(+)$1	260	162	180	19.4000
CCUCUCCUGCCCCCGGGG	chr22:50016237-50016477(-)$1	240	169	187	14.1000
CGCGCGCCGACCCGGCGC	chr7:5569450-5569716(-)$1	266	154	172	19.1000
CCGGCGCCACCUCGGGCC	chr2:10588154-10588409(-)$1	255	12	30	18.4000
CCGGCGCUGCGCCGGAGC	chr1:231557659-231557912(-)$1	253	75	93	17.7000
cgggccccgcccccgggg	chr11:70116720-70117070(+)$1	350	15	33	20.3000
CUCGCUCAGCGCGCGGGC	chrX:20284774-20285016(-)$1	242	30	48	14.7000
cccccgccgccgcccucg	chr11:64014049-64014310(-)$1	261	33	51	17.2000
CCCACCGCGCCCACGGGG	chr9:140175279-140175523(+)$1	244	44	62	14.9000
CCGGGGCUGCCCGCUGGC	chr6:166755806-166756080(-)$1	274	201	219	17.7000
CCGCCACCGCCCGCGGCC	chr17:7477031-7477316(+)$1	285	33	51	19.0000
CUGCAGCUgcccccgggc	chr11:64014144-64014445(-)$1	301	149	167	17.5000
CCCGCGCUGCGGCCUGGC	chr5:179247988-179248234(+)$1	246	113	131	20.3000
ACCUGGCGGCCCCCGGGG	chr19:14551859-14552125(+)$1	266	147	165	16.0000

#otherMatches

#Struct PSSM
dgggggggddddpppppp	chr7:156931672-156931985(+)$1	313	105	123	19.3000
""ffffff!!dddd"""e	chr12:125051859-125052113(-)$1	254	27	45	20.1000
ccggggggg[a[dddd[f	chr22:21983237-21983519(-)$1	282	27	45	21.9000
======::FFFFFFiiii	chr5:154135053-154135313(+)$1	260	60	78	15.3000
hhhhcccbbeeeee[hhh	chr2:10588299-10588552(-)$1	253	116	134	22.0000
lffffffa[bb[bb[bbe	chr1:1284352-1284629(-)$1	277	165	183	24.3000
rrrrrrrdddd4444eee	chr17:7154514-7154776(-)$1	262	66	84	15.8000
cc]bbGGGGGGGYYEEEE	chr5:154135174-154135469(+)$1	295	230	248	17.7000
g]ccc22cccbbIIIIII	chr19:2151268-2151556(-)$1	288	149	167	15.4000
ggggBB{EEEEEJJJJJJ	chr3:128211703-128211981(+)$1	278	52	70	18.7000
ddd]aggggggg::::::	chr19:54971701-54971950(+)$1	249	69	87	22.4000
fffff[eeeee[ddddbb	chr19:59056284-59056560(+)$1	276	119	137	17.0000
cc[bb[hhhhhhhh[a!!	chr19:1205989-1206266(+)$1	277	69	87	19.4000
DDDDAFFFFFF:::::::	chr3:133465149-133465428(+)$1	279	234	252	21.1000
hhffffff[ammmma]ff	chr7:150778160-150778462(-)$1	302	109	127	19.7000
========[eeeee[bb[	chr1:27022570-27022816(+)$1	246	124	142	19.4000
hhhhhhhh[bblllbb]h	chr2:159313482-159313804(+)$1	322	65	83	22.3000
FFFFFFddddhhhhhhhh	chr15:91445894-91446143(+)$1	249	103	121	16.6000
biiiiiiiii!!ccc!!c	chr7:5634090-5634325(+)$1	235	119	137	31.8000
ffffff!!hhhhhhhh!!	chr12:116714992-116715235(-)$1	243	68	86	18.3000
==================	chr19:4038174-4038426(+)$1	252	51	69	18.2000
mmeeeee22ffffff:BB	chr19:41859577-41859817(-)$1	240	92	110	17.6000
iiiicccbbeeeee[hhh	chr2:10588220-10588472(-)$1	252	36	54	22.0000
hhhh:ffffffdddd!!e	chr6:42981911-42982182(+)$1	271	144	162	15.8000
i22cccccc::eeeeemm	chr12:123756066-123756314(-)$1	248	85	103	22.0000
b22eeeeeeeeeeeeeee	chr22:19711744-19712005(+)$1	261	172	190	19.8000
dddeeeeellleeeeeFF	chr17:80477550-80477817(+)$1	267	162	180	19.3000
DDCCC{DDDDA{DDDDdd	chr16:23847341-23847639(+)$1	298	74	92	21.0000
DDD{DDDD{DDDDBB{BB	chr19:18530345-18530622(+)$1	277	60	78	19.9000
i!!ccc!!bb[bbmmmmb	chr16:89556637-89556892(-)$1	255	111	129	23.3000
FFFFFF{A{BBbb[bb[b	chrX:152953467-152953738(+)$1	271	14	32	19.7000
CC{BBKKGGGGGGGKKDD	chr11:62368813-62369055(-)$1	242	79	97	14.5000
EEKKA{CCCIIIIIIIII	chrX:153686584-153686856(+)$1	272	12	30	20.1000
[eeeeennnnneeeee33	chr10:105727017-105727340(+)$1	323	246	264	18.5000
eee]cccEEEEEEEEEE:	chr1:215740736-215741034(+)$1	298	125	143	20.8000
HHHfffffflllffffff	chr7:5569341-5569637(-)$1	296	75	93	19.1000
cc[bb[hhhhhhhh[a!!	chr19:1205896-1206156(+)$1	260	162	180	19.4000
fff55555eeeeeCCCCC	chr22:50016237-50016477(-)$1	240	169	187	14.1000
JJJfffffflllffffff	chr7:5569450-5569716(-)$1	266	154	172	19.1000
EE{BB{BB{ACCCLLLBB	chr2:10588154-10588409(-)$1	255	12	30	18.4000
fffffflllffffffddd	chr1:231557659-231557912(-)$1	253	75	93	17.7000
{GGGGGGGdddd"""a[i	chr11:70116720-70117070(+)$1	350	15	33	20.3000
c]dddd22dddd]ddddG	chrX:20284774-20285016(-)$1	242	30	48	14.7000
EEE:::dddd[bbmmmmb	chr11:64014049-64014310(-)$1	261	33	51	17.2000
odddd]ccc]ccc]iiii	chr9:140175279-140175523(+)$1	244	44	62	14.9000
GGGGG}CCCEEEEE:::h	chr6:166755806-166756080(-)$1	274	201	219	17.7000
:DDDD:iiiiiiiii[ff	chr17:7477031-7477316(+)$1	285	33	51	19.0000
lccc]a22==========	chr11:64014144-64014445(-)$1	301	149	167	17.5000
[eeeee[dddd[eeeeeo	chr5:179247988-179248234(+)$1	246	113	131	20.3000
nffffffeeeeedddd##	chr19:14551859-14552125(+)$1	266	147	165	16.0000

#DB
)(((((((((((......	chr7:156931672-156931985(+)$1	1	105	123	19.3000
..((((((..((((...(	chr12:125051859-125052113(-)$1	1	27	45	20.1000
(((((((((.(.((((.(	chr22:21983237-21983519(-)$1	1	27	45	21.9000
))))))..((((((((((	chr5:154135053-154135313(+)$1	1	60	78	15.3000
((((((((((((((.(((	chr2:10588299-10588552(-)$1	1	116	134	22.0000
.))))))(.((.((.(((	chr1:1284352-1284629(-)$1	1	165	183	24.3000
.......))))....)))	chr17:7154514-7154776(-)$1	1	66	84	15.8000
)).)))))))))..))))	chr5:154135174-154135469(+)$1	1	230	248	17.7000
).)))..)))))))))))	chr19:2151268-2151556(-)$1	1	149	167	15.4000
))))((.(((((((((((	chr3:128211703-128211981(+)$1	1	52	70	18.7000
))).))))))))......	chr19:54971701-54971950(+)$1	1	69	87	22.4000
(((((.(((((.((((((	chr19:59056284-59056560(+)$1	1	119	137	17.0000
((.((.((((((((.(..	chr19:1205989-1206266(+)$1	1	69	87	19.4000
))))))))))).......	chr3:133465149-133465428(+)$1	1	234	252	21.1000
((((((((.(....).))	chr7:150778160-150778462(-)$1	1	109	127	19.7000
((((((((.(((((.((.	chr1:27022570-27022816(+)$1	1	124	142	19.4000
((((((((.((...)).)	chr2:159313482-159313804(+)$1	1	65	83	22.3000
((((((((((((((((((	chr15:91445894-91446143(+)$1	1	103	121	16.6000
((((((((((..(((..(	chr7:5634090-5634325(+)$1	1	119	137	31.8000
((((((..((((((((..	chr12:116714992-116715235(-)$1	1	68	86	18.3000
((((((((((((((((((	chr19:4038174-4038426(+)$1	1	51	69	18.2000
..)))))..)))))).))	chr19:41859577-41859817(-)$1	1	92	110	17.6000
((((((((((((((.(((	chr2:10588220-10588472(-)$1	1	36	54	22.0000
)))).((((((((((..(	chr6:42981911-42982182(+)$1	1	144	162	15.8000
)..))))))..(((((..	chr12:123756066-123756314(-)$1	1	85	103	22.0000
)..))))))))))(((((	chr22:19711744-19712005(+)$1	1	172	190	19.8000
)))(((((...)))))))	chr17:80477550-80477817(+)$1	1	162	180	19.3000
(((((.(((((.((((((	chr16:23847341-23847639(+)$1	1	74	92	21.0000
(((.((((.((((((.((	chr19:18530345-18530622(+)$1	1	60	78	19.9000
(..(((..((.((....)	chr16:89556637-89556892(-)$1	1	111	129	23.3000
((((((.(.((((.((.(	chrX:152953467-152953738(+)$1	1	14	32	19.7000
((.((..(((((((..((	chr11:62368813-62369055(-)$1	1	79	97	14.5000
((..(.((((((((((((	chrX:153686584-153686856(+)$1	1	12	30	20.1000
.(((((.....)))))..	chr10:105727017-105727340(+)$1	1	246	264	18.5000
))).))))))))))))).	chr1:215740736-215741034(+)$1	1	125	143	20.8000
(((((((((...))))))	chr7:5569341-5569637(-)$1	1	75	93	19.1000
((.((.((((((((.(..	chr19:1205896-1206156(+)$1	1	162	180	19.4000
))).....))))))))))	chr22:50016237-50016477(-)$1	1	169	187	14.1000
)))((((((...))))))	chr7:5569450-5569716(-)$1	1	154	172	19.1000
((.((.((.((((...((	chr2:10588154-10588409(-)$1	1	12	30	18.4000
((((((...)))))))))	chr1:231557659-231557912(-)$1	1	75	93	17.7000
.(((((((((((...(.(	chr11:70116720-70117070(+)$1	1	15	33	20.3000
).))))..)))).))))(	chrX:20284774-20285016(-)$1	1	30	48	14.7000
(((...((((.((....)	chr11:64014049-64014310(-)$1	1	33	51	17.2000
.)))).))).))).))))	chr9:140175279-140175523(+)$1	1	44	62	14.9000
))))).))))))))...(	chr6:166755806-166756080(-)$1	1	201	219	17.7000
.((((.(((((((((.((	chr17:7477031-7477316(+)$1	1	33	51	19.0000
.))).)..))))))))))	chr11:64014144-64014445(-)$1	1	149	167	17.5000
.(((((.((((.(((((.	chr5:179247988-179248234(+)$1	1	113	131	20.3000
.)))))))))))((((..	chr19:14551859-14552125(+)$1	1	147	165	16.0000

#PSSM
C : 0.48	c : 0.34	g : 0.08	u : 0.04	G : 0.02	a : 0.02	A : 0.02	
C : 0.42	c : 0.40	U : 0.06	g : 0.04	G : 0.04	a : 0.02	u : 0.02	
C : 0.36	c : 0.27	g : 0.16	G : 0.12	u : 0.02	A : 0.02	a : 0.02	U : 0.02	
g : 0.38	G : 0.32	C : 0.16	c : 0.10	A : 0.02	U : 0.02	
c : 0.42	C : 0.34	G : 0.08	U : 0.06	g : 0.06	A : 0.04	
g : 0.46	G : 0.32	C : 0.10	U : 0.06	a : 0.02	c : 0.02	A : 0.02	
c : 0.46	C : 0.40	G : 0.08	g : 0.04	A : 0.02	
c : 0.42	C : 0.27	G : 0.10	U : 0.10	g : 0.06	a : 0.02	A : 0.02	
G : 0.40	g : 0.40	c : 0.08	C : 0.06	a : 0.02	u : 0.02	A : 0.02	
c : 0.46	C : 0.44	g : 0.06	A : 0.04	
c : 0.44	C : 0.38	G : 0.06	g : 0.04	U : 0.04	a : 0.02	u : 0.02	
c : 0.32	C : 0.30	g : 0.19	G : 0.10	A : 0.04	U : 0.04	
c : 0.48	C : 0.30	G : 0.14	g : 0.06	A : 0.02	
c : 0.42	C : 0.32	g : 0.12	G : 0.08	A : 0.04	U : 0.02	
g : 0.38	G : 0.34	c : 0.14	U : 0.06	A : 0.04	C : 0.04	
G : 0.38	g : 0.27	c : 0.18	C : 0.08	A : 0.04	a : 0.02	u : 0.02	
G : 0.38	g : 0.32	c : 0.18	C : 0.08	A : 0.04	
C : 0.38	c : 0.36	g : 0.10	G : 0.10	A : 0.06	

#score	956.4000000000011
#seq	50
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_UTR_m3_run2.nuc.txt

#NT
UUUCCUUUCAUAGAUUUUUCUGUGACCAUGAAAGAGAGAAAUAAAGAAUGAUCCAUGAUUUCUAAACACCUUUUCCUGAGGAUAUAGUCAUGUUGGAAGGCCUUGUAGCCUGGGUUCUCAAUACCUAUUUGGGAAAAUAUGUCAAUAACCUGAACACUGACCAGCUCUCAGUUGCACUUCUCAAAGGUGAGUAUUUCUCUGGGUGAGAUACAGCUUUAUAGGUGGCGUUUCUAUUUUUGUAUUUUUUUUGUUGUCCUGAGAAUCAUAAAACCUAAU	chr1:12294219-12294514(+)$1	295	15	291	343.0000

#otherMatches

#Struct PSSM
cc[bboooooobbcccDDDD{GGGGGGGEEEEEKKBBeeeeemmmmeeeeeHHHHHHHHeeeeeqqqqqqqqeeeee::::::cccmmmmccc::::HHHHHHHH:::::ffffff[cccnnnnnccc22ffffff:eeeee$$$$$ccc!!eeeee"""eeeeeooooooeeeee22eeeee22ccc22eeeee:ccc$$$$$dddd(((((((((eeeeemmmmeeeee0000000000dddd55555ccc:BB}EEEEE}GGGGGGG}DDDD:	chr8:95751579-95751863(+)$1	284	2	278	343.0000
dddd"""gggggggmmmmggggggg4444dddd:IIIIIIIII::::::::dddd!!bb!!ccc####ddddnnnnndddd333ccc22bb22ddddddddoooooodddd:::gggggggpppppppggggggg:::::ddddvvvvvvvvvvvvvddddeeeeellleeeeeeeeeennnnneeeee::IIIIIIIII}GGGGGGGYYDDDD:::::::::ffffff$$$$$fffffffffffftttttttttttffffff]ffffff333fff	chr1:12294219-12294514(+)$1	295	15	291	343.0000

#DB
((.((......)))))((((.((((((((((((..(((((((....)))))(((((((((((((........)))))......(((....)))....)))))))).....((((((.(((.....)))..)))))).(((((.....(((..(((((...(((((......)))))..)))))..)))..))))).(((.....((((.........(((((....)))))..........)))).....))).)).))))).))))))).)))).	chr8:95751579-95751863(+)$1	1	2	278	343.0000
((((...(((((((....)))))))....)))).(((((((((........((((..((..(((....((((.....))))...)))..))..))))((((......))))...(((((((.......))))))).....((((.............))))(((((...)))))(((((.....)))))..))))))))).)))))))..)))).........((((((.....((((((((((((...........)))))).))))))...)))	chr1:12294219-12294514(+)$1	1	15	291	343.0000

#PSSM
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 1.00	

#score	686.0
#seq	2
#width	276
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_UTR_m3_run1.nuc.txt

#NT
GGAGAGGG	chr17:75316236-75316506(+)$1	270	174	182	21.0000
GGUGAGGG	chr12:30906733-30907037(-)$1	304	76	84	18.5000
GGAGAGGA	chr11:18034145-18034393(-)$1	248	235	243	17.0000
GGGGAGGG	chr7:1577319-1577596(+)$1	277	128	136	19.5000
GGAGAGGG	chr17:75372093-75372353(+)$1	260	186	194	21.0000
ggggaggg	chr6:86352557-86352819(-)$1	262	75	83	19.5000
GGAGAGGG	chr20:3906679-3906919(+)$1	240	20	28	21.0000
ggggaggg	chr17:41622796-41623050(+)$1	254	55	63	19.5000
ggagaggg	chr20:57467353-57467621(+)$1	268	44	52	21.0000

#otherMatches

#Struct PSSM
::::::::	chr17:15405841-15406109(-)$1	268	1	9	17.0000
eee::a[a	chr17:75316236-75316506(+)$1	270	174	182	21.0000
eeeeefff	chr12:30906733-30907037(-)$1	304	76	84	18.5000
dqqqqqqq	chr11:18034145-18034393(-)$1	248	235	243	17.0000
nnnnna]i	chr7:1577319-1577596(+)$1	277	128	136	19.5000
ee22hhhh	chr17:75372093-75372353(+)$1	260	186	194	21.0000
dddd!!a#	chr6:86352557-86352819(-)$1	262	75	83	19.5000
^^^^^^^^	chr20:3906679-3906919(+)$1	240	20	28	21.0000
EEFFFFFF	chr17:41622796-41623050(+)$1	254	55	63	19.5000
^^^^^^^^	chr20:57467353-57467621(+)$1	268	44	52	21.0000

#DB
........	chr17:15405841-15406109(-)$1	1	1	9	17.0000
)))..(.(	chr17:75316236-75316506(+)$1	1	174	182	21.0000
)))))(((	chr12:30906733-30907037(-)$1	1	76	84	18.5000
(.......	chr11:18034145-18034393(-)$1	1	235	243	17.0000
.....).)	chr7:1577319-1577596(+)$1	1	128	136	19.5000
))..))))	chr17:75372093-75372353(+)$1	1	186	194	21.0000
((((..(.	chr6:86352557-86352819(-)$1	1	75	83	19.5000
........	chr20:3906679-3906919(+)$1	1	20	28	21.0000
((((((((	chr17:41622796-41623050(+)$1	1	55	63	19.5000
........	chr20:57467353-57467621(+)$1	1	44	52	21.0000

#PSSM
G : 0.60	g : 0.40	
G : 0.60	g : 0.40	
A : 0.40	a : 0.20	g : 0.20	U : 0.10	G : 0.10	
G : 0.60	g : 0.40	
A : 0.60	a : 0.40	
G : 0.60	g : 0.40	
G : 0.60	g : 0.30	a : 0.10	
G : 0.50	g : 0.40	A : 0.10	

#score	195.0
#seq	10
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_transcript_m3_run2.nuc.txt

#NT
aggc	chr1:2190195-2190451(+)$1	256	1	5	11.9999
AGGC	chr1:33789810-33790073(-)$1	263	33	37	11.9999
AGGC	chr19:1171761-1172054(-)$1	293	0	4	11.9999
AGGC	chr2:236480851-236481119(+)$1	268	131	135	11.9999
aggc	chr9:137234099-137234338(+)$1	239	117	121	11.9999
AGGC	chr16:89980035-89980338(+)$1	303	12	16	11.9999
aggc	chr5:1100677-1100960(-)$1	283	178	182	11.9999
AGGC	chr7:158179141-158179409(-)$1	268	256	260	11.9999
AGGC	chr9:136228881-136229119(-)$1	238	29	33	11.9999
AGGC	chr17:56167684-56167959(+)$1	275	146	150	11.9999
AGGC	chr17:47127801-47128065(+)$1	264	5	9	11.9999
AGGC	chr16:4739396-4739646(+)$1	250	174	178	11.9999
AGGC	chr19:6414422-6414675(-)$1	253	21	25	11.9999
AGGC	chr1:43392062-43392303(-)$1	241	88	92	11.9999
AGGC	chr9:136781246-136781517(-)$1	271	80	84	11.9999
AGGC	chr17:79959390-79959611(+)$1	221	41	45	11.9999
AGGC	chr2:10300095-10300328(+)$1	233	48	52	11.9999
AGGC	chr17:70553401-70553657(-)$1	256	164	168	11.9999
AGGC	chr1:17915684-17915942(+)$1	258	33	37	11.9999
AGGC	chr17:47127683-47127918(+)$1	235	6	10	11.9999
aggc	chr16:3764517-3764764(-)$1	247	130	134	11.9999
AGGC	chr17:79958810-79959029(+)$1	219	20	24	11.9999
AGGC	chr9:137233254-137233513(+)$1	259	61	65	11.9999
AGGC	chr17:47126843-47127097(+)$1	254	32	36	11.9999
aggc	chr22:39415942-39416202(+)$1	260	0	4	11.9999
AGGC	chr3:48471155-48471392(-)$1	237	47	51	11.9999
AGGC	chr2:240204716-240205067(-)$1	351	12	16	11.9999
AGGC	chr9:95968413-95968676(+)$1	263	35	39	11.9999
AGGC	chr21:47564757-47564984(-)$1	227	17	21	11.9999
aggc	chr7:223153-223462(+)$1	309	147	151	11.9999
AGGC	chr16:89474686-89474929(-)$1	243	72	76	11.9999
AGGC	chr17:79780915-79781165(-)$1	250	184	188	11.9999
AGGC	chr17:20906049-20906311(-)$1	262	154	158	11.9999
AGGC	chr7:5461682-5461894(-)$1	212	4	8	11.9999
aggc	chr1:2192071-2192316(+)$1	245	1	5	11.9999
AGGC	chr17:79963133-79963403(+)$1	270	9	13	11.9999
AGGC	chr1:214213523-214213816(+)$1	293	211	215	11.9999
AGGC	chr7:73024268-73024524(-)$1	256	125	129	11.9999
aggc	chr17:75410906-75411161(+)$1	255	29	33	11.9999
AGGC	chr1:2168144-2168393(+)$1	249	115	119	11.9999
AGGC	chr1:2183637-2183902(+)$1	265	165	169	11.9999
AGGC	chr9:137245404-137245664(+)$1	260	143	147	11.9999
aggc	chr1:31519996-31520286(-)$1	290	276	280	11.9999
aggc	chr16:89547648-89547898(-)$1	250	114	118	11.9999
aggc	chr14:95058718-95058956(+)$1	238	110	114	11.9999
AGGC	chr17:75437764-75438017(+)$1	253	155	159	11.9999
AGGC	chr9:131910863-131911139(+)$1	276	59	63	11.9999
AGGC	chr2:3292583-3292859(-)$1	276	106	110	11.9999
AGGC	chr17:80188055-80188291(+)$1	236	16	20	11.9999
AGGC	chr17:80675701-80675969(+)$1	268	194	198	11.9999
aggc	chr2:236422138-236422380(+)$1	242	110	114	11.9999
AGGC	chr17:47126958-47127191(+)$1	233	87	91	11.9999
AGGC	chr10:714734-714985(-)$1	251	124	128	11.9999
AGGC	chr2:3318532-3318909(-)$1	377	207	211	11.9999
AGGC	chr21:46872097-46872363(+)$1	266	23	27	11.9999
AGGC	chr14:105358291-105358616(+)$1	325	132	136	11.9999
AGGC	chr11:2152484-2152692(-)$1	208	102	106	11.9999
AGGC	chr2:20419554-20419808(-)$1	254	20	24	11.9999
aggc	chr7:214615-214927(+)$1	312	66	70	11.9999
AGGC	chr2:241566379-241566665(+)$1	286	60	64	11.9999
aggc	chr17:851605-851869(-)$1	264	54	58	11.9999
AGGC	chr14:95058996-95059245(+)$1	249	189	193	11.9999
AGGC	chr17:3566689-3566987(-)$1	298	73	77	11.9999
AGGC	chr2:20419842-20420081(-)$1	239	47	51	11.9999
AGGC	chr17:861105-861359(-)$1	254	59	63	11.9999
AGGC	chr5:150647631-150647848(+)$1	217	69	73	11.9999
aggc	chr17:849699-850034(-)$1	335	23	27	11.9999
aggc	chr17:851750-852107(-)$1	357	18	22	11.9999
AGGC	chr17:7012991-7013244(-)$1	253	15	19	11.9999
AGGC	chr11:374240-374501(+)$1	261	118	122	11.9999
AGGC	chr9:131910780-131911059(+)$1	279	42	46	11.9999
AGGC	chr21:46835384-46835629(+)$1	245	135	139	11.9999
aggc	chr17:74544387-74544701(-)$1	314	79	83	11.9999
AGGC	chr11:2152335-2152547(-)$1	212	142	146	11.9999
AGGC	chr9:136848434-136848733(-)$1	299	144	148	11.9999
AGGC	chr11:68097923-68098189(+)$1	266	105	109	11.9999
aggc	chr12:51323985-51324212(+)$1	227	120	124	11.9999
aggc	chr1:2191421-2191683(+)$1	262	206	210	11.9999
AGGC	chr17:48187622-48187914(+)$1	292	197	201	11.9999
AGGC	chr11:2152527-2152734(-)$1	207	144	148	11.9999
AGGC	chr6:170049553-170049914(-)$1	361	175	179	11.9999
AGGC	chr16:588229-588481(+)$1	252	1	5	11.9999
AGGC	chr16:89586129-89586363(+)$1	234	51	55	11.9999

#otherMatches

#Struct PSSM
3ccc	chr1:2190500-2190747(+)$1	247	175	179	11.9999
:III	chr1:2190195-2190451(+)$1	256	1	5	11.9999
CC::	chr1:33789810-33790073(-)$1	263	33	37	11.9999
:BBK	chr19:1171761-1172054(-)$1	293	0	4	11.9999
cccd	chr2:236480851-236481119(+)$1	268	131	135	11.9999
nnng	chr9:137234099-137234338(+)$1	239	117	121	11.9999
dddd	chr16:89980035-89980338(+)$1	303	12	16	11.9999
:III	chr5:1100677-1100960(-)$1	283	178	182	11.9999
ddmm	chr7:158179141-158179409(-)$1	268	256	260	11.9999
====	chr9:136228881-136229119(-)$1	238	29	33	11.9999
!bbc	chr17:56167684-56167959(+)$1	275	146	150	11.9999
:::E	chr17:47127801-47128065(+)$1	264	5	9	11.9999
HHH}	chr16:4739396-4739646(+)$1	250	174	178	11.9999
:EEE	chr19:6414422-6414675(-)$1	253	21	25	11.9999
gggg	chr1:43392062-43392303(-)$1	241	88	92	11.9999
{DDD	chr9:136781246-136781517(-)$1	271	80	84	11.9999
cc]a	chr17:79959390-79959611(+)$1	221	41	45	11.9999
ddd"	chr2:10300095-10300328(+)$1	233	48	52	11.9999
2a]d	chr17:70553401-70553657(-)$1	256	164	168	11.9999
====	chr1:17915684-17915942(+)$1	258	33	37	11.9999
::::	chr17:47127683-47127918(+)$1	235	6	10	11.9999
ggg[	chr16:3764517-3764764(-)$1	247	130	134	11.9999
$ccc	chr17:79958810-79959029(+)$1	219	20	24	11.9999
DDDD	chr9:137233254-137233513(+)$1	259	61	65	11.9999
a!!d	chr17:47126843-47127097(+)$1	254	32	36	11.9999
HHHH	chr22:39415942-39416202(+)$1	260	0	4	11.9999
::ee	chr3:48471155-48471392(-)$1	237	47	51	11.9999
ddd:	chr2:240204716-240205067(-)$1	351	12	16	11.9999
{CCC	chr9:95968413-95968676(+)$1	263	35	39	11.9999
DDff	chr21:47564757-47564984(-)$1	227	17	21	11.9999
{DDD	chr7:223153-223462(+)$1	309	147	151	11.9999
hhhh	chr16:89474686-89474929(-)$1	243	72	76	11.9999
]ggg	chr17:79780915-79781165(-)$1	250	184	188	11.9999
iiii	chr17:20906049-20906311(-)$1	262	154	158	11.9999
ddcc	chr7:5461682-5461894(-)$1	212	4	8	11.9999
====	chr1:2192071-2192316(+)$1	245	1	5	11.9999
::GG	chr17:79963133-79963403(+)$1	270	9	13	11.9999
dddd	chr1:214213523-214213816(+)$1	293	211	215	11.9999
!!ff	chr7:73024268-73024524(-)$1	256	125	129	11.9999
gggg	chr17:75410906-75411161(+)$1	255	29	33	11.9999
[ggg	chr1:2168144-2168393(+)$1	249	115	119	11.9999
qfff	chr1:2183637-2183902(+)$1	265	165	169	11.9999
iiii	chr9:137245404-137245664(+)$1	260	143	147	11.9999
e22b	chr1:31519996-31520286(-)$1	290	276	280	11.9999
GEEE	chr16:89547648-89547898(-)$1	250	114	118	11.9999
nnnf	chr14:95058718-95058956(+)$1	238	110	114	11.9999
ffa!	chr17:75437764-75438017(+)$1	253	155	159	11.9999
ffff	chr9:131910863-131911139(+)$1	276	59	63	11.9999
ccmm	chr2:3292583-3292859(-)$1	276	106	110	11.9999
DDDK	chr17:80188055-80188291(+)$1	236	16	20	11.9999
a]ff	chr17:80675701-80675969(+)$1	268	194	198	11.9999
]ggg	chr2:236422138-236422380(+)$1	242	110	114	11.9999
nnbb	chr17:47126958-47127191(+)$1	233	87	91	11.9999
a]dd	chr10:714734-714985(-)$1	251	124	128	11.9999
]bb:	chr2:3318532-3318909(-)$1	377	207	211	11.9999
pppe	chr21:46872097-46872363(+)$1	266	23	27	11.9999
ffff	chr14:105358291-105358616(+)$1	325	132	136	11.9999
ddd4	chr11:2152484-2152692(-)$1	208	102	106	11.9999
ccc!	chr2:20419554-20419808(-)$1	254	20	24	11.9999
dd[a	chr7:214615-214927(+)$1	312	66	70	11.9999
pppp	chr2:241566379-241566665(+)$1	286	60	64	11.9999
]ccc	chr17:851605-851869(-)$1	264	54	58	11.9999
====	chr14:95058996-95059245(+)$1	249	189	193	11.9999
====	chr17:3566689-3566987(-)$1	298	73	77	11.9999
eedd	chr2:20419842-20420081(-)$1	239	47	51	11.9999
a]cc	chr17:861105-861359(-)$1	254	59	63	11.9999
dddd	chr5:150647631-150647848(+)$1	217	69	73	11.9999
ooab	chr17:849699-850034(-)$1	335	23	27	11.9999
::::	chr17:851750-852107(-)$1	357	18	22	11.9999
mccc	chr17:7012991-7013244(-)$1	253	15	19	11.9999
ffff	chr11:374240-374501(+)$1	261	118	122	11.9999
IIII	chr9:131910780-131911059(+)$1	279	42	46	11.9999
c!!b	chr21:46835384-46835629(+)$1	245	135	139	11.9999
JJJJ	chr17:74544387-74544701(-)$1	314	79	83	11.9999
EEEE	chr11:2152335-2152547(-)$1	212	142	146	11.9999
"a[d	chr9:136848434-136848733(-)$1	299	144	148	11.9999
ffff	chr11:68097923-68098189(+)$1	266	105	109	11.9999
ccc[	chr12:51323985-51324212(+)$1	227	120	124	11.9999
:ccc	chr1:2191421-2191683(+)$1	262	206	210	11.9999
FFFF	chr17:48187622-48187914(+)$1	292	197	201	11.9999
ddd4	chr11:2152527-2152734(-)$1	207	144	148	11.9999
a]ee	chr6:170049553-170049914(-)$1	361	175	179	11.9999
:DDD	chr16:588229-588481(+)$1	252	1	5	11.9999
fffn	chr16:89586129-89586363(+)$1	234	51	55	11.9999

#DB
.)))	chr1:2190500-2190747(+)$1	1	175	179	11.9999
.(((	chr1:2190195-2190451(+)$1	1	1	5	11.9999
((..	chr1:33789810-33790073(-)$1	1	33	37	11.9999
.((.	chr19:1171761-1172054(-)$1	1	0	4	11.9999
))))	chr2:236480851-236481119(+)$1	1	131	135	11.9999
...)	chr9:137234099-137234338(+)$1	1	117	121	11.9999
))))	chr16:89980035-89980338(+)$1	1	12	16	11.9999
.(((	chr5:1100677-1100960(-)$1	1	178	182	11.9999
((..	chr7:158179141-158179409(-)$1	1	256	260	11.9999
((((	chr9:136228881-136229119(-)$1	1	29	33	11.9999
.(((	chr17:56167684-56167959(+)$1	1	146	150	11.9999
...(	chr17:47127801-47128065(+)$1	1	5	9	11.9999
))).	chr16:4739396-4739646(+)$1	1	174	178	11.9999
.(((	chr19:6414422-6414675(-)$1	1	21	25	11.9999
))))	chr1:43392062-43392303(-)$1	1	88	92	11.9999
.(((	chr9:136781246-136781517(-)$1	1	80	84	11.9999
)).)	chr17:79959390-79959611(+)$1	1	41	45	11.9999
(((.	chr2:10300095-10300328(+)$1	1	48	52	11.9999
.).)	chr17:70553401-70553657(-)$1	1	164	168	11.9999
))))	chr1:17915684-17915942(+)$1	1	33	37	11.9999
....	chr17:47127683-47127918(+)$1	1	6	10	11.9999
(((.	chr16:3764517-3764764(-)$1	1	130	134	11.9999
.(((	chr17:79958810-79959029(+)$1	1	20	24	11.9999
((((	chr9:137233254-137233513(+)$1	1	61	65	11.9999
(..(	chr17:47126843-47127097(+)$1	1	32	36	11.9999
((((	chr22:39415942-39416202(+)$1	1	0	4	11.9999
..((	chr3:48471155-48471392(-)$1	1	47	51	11.9999
))).	chr2:240204716-240205067(-)$1	1	12	16	11.9999
.(((	chr9:95968413-95968676(+)$1	1	35	39	11.9999
((((	chr21:47564757-47564984(-)$1	1	17	21	11.9999
.(((	chr7:223153-223462(+)$1	1	147	151	11.9999
((((	chr16:89474686-89474929(-)$1	1	72	76	11.9999
.)))	chr17:79780915-79781165(-)$1	1	184	188	11.9999
))))	chr17:20906049-20906311(-)$1	1	154	158	11.9999
((((	chr7:5461682-5461894(-)$1	1	4	8	11.9999
((((	chr1:2192071-2192316(+)$1	1	1	5	11.9999
..((	chr17:79963133-79963403(+)$1	1	9	13	11.9999
((((	chr1:214213523-214213816(+)$1	1	211	215	11.9999
..((	chr7:73024268-73024524(-)$1	1	125	129	11.9999
((((	chr17:75410906-75411161(+)$1	1	29	33	11.9999
.(((	chr1:2168144-2168393(+)$1	1	115	119	11.9999
.)))	chr1:2183637-2183902(+)$1	1	165	169	11.9999
((((	chr9:137245404-137245664(+)$1	1	143	147	11.9999
)..)	chr1:31519996-31520286(-)$1	1	276	280	11.9999
((((	chr16:89547648-89547898(-)$1	1	114	118	11.9999
...)	chr14:95058718-95058956(+)$1	1	110	114	11.9999
(((.	chr17:75437764-75438017(+)$1	1	155	159	11.9999
((((	chr9:131910863-131911139(+)$1	1	59	63	11.9999
((..	chr2:3292583-3292859(-)$1	1	106	110	11.9999
(((.	chr17:80188055-80188291(+)$1	1	16	20	11.9999
).))	chr17:80675701-80675969(+)$1	1	194	198	11.9999
.)))	chr2:236422138-236422380(+)$1	1	110	114	11.9999
..))	chr17:47126958-47127191(+)$1	1	87	91	11.9999
).))	chr10:714734-714985(-)$1	1	124	128	11.9999
.)).	chr2:3318532-3318909(-)$1	1	207	211	11.9999
...)	chr21:46872097-46872363(+)$1	1	23	27	11.9999
((((	chr14:105358291-105358616(+)$1	1	132	136	11.9999
))).	chr11:2152484-2152692(-)$1	1	102	106	11.9999
(((.	chr2:20419554-20419808(-)$1	1	20	24	11.9999
((.(	chr7:214615-214927(+)$1	1	66	70	11.9999
....	chr2:241566379-241566665(+)$1	1	60	64	11.9999
.)))	chr17:851605-851869(-)$1	1	54	58	11.9999
))))	chr14:95058996-95059245(+)$1	1	189	193	11.9999
((((	chr17:3566689-3566987(-)$1	1	73	77	11.9999
((((	chr2:20419842-20420081(-)$1	1	47	51	11.9999
).))	chr17:861105-861359(-)$1	1	59	63	11.9999
))))	chr5:150647631-150647848(+)$1	1	69	73	11.9999
..))	chr17:849699-850034(-)$1	1	23	27	11.9999
....	chr17:851750-852107(-)$1	1	18	22	11.9999
.)))	chr17:7012991-7013244(-)$1	1	15	19	11.9999
))))	chr11:374240-374501(+)$1	1	118	122	11.9999
((((	chr9:131910780-131911059(+)$1	1	42	46	11.9999
(..(	chr21:46835384-46835629(+)$1	1	135	139	11.9999
((((	chr17:74544387-74544701(-)$1	1	79	83	11.9999
((((	chr11:2152335-2152547(-)$1	1	142	146	11.9999
.(.(	chr9:136848434-136848733(-)$1	1	144	148	11.9999
((((	chr11:68097923-68098189(+)$1	1	105	109	11.9999
(((.	chr12:51323985-51324212(+)$1	1	120	124	11.9999
.(((	chr1:2191421-2191683(+)$1	1	206	210	11.9999
((((	chr17:48187622-48187914(+)$1	1	197	201	11.9999
))).	chr11:2152527-2152734(-)$1	1	144	148	11.9999
).))	chr6:170049553-170049914(-)$1	1	175	179	11.9999
.(((	chr16:588229-588481(+)$1	1	1	5	11.9999
(((.	chr16:89586129-89586363(+)$1	1	51	55	11.9999

#PSSM
A : 0.76	a : 0.23	
G : 0.76	g : 0.23	
G : 0.76	g : 0.23	
C : 0.76	c : 0.23	

#score	1007.9999999999999
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_transcript_m3_run2.nuc.txt

#NT
GAAGCUGAAU	chrM:14210-14418(-)$1	208	108	118	20.5357
GAUUGUGAAU	chrM:12117-12338(+)$1	221	47	57	13.0357
UCAGCUAAAU	chrM:4319-4542(+)$1	223	90	100	13.0357
UAUUCUGAAU	chrM:14366-14583(-)$1	217	34	44	14.9999
GAUUGUGAAU	chrM:12055-12295(+)$1	240	109	119	13.0357
AAAGUUGAAC	chr11:65195640-65195898(+)$1	258	80	90	10.1785
gaagaugaag	chr4:174253048-174253320(-)$1	272	48	58	12.3214
GAAGCUGAAU	chrM:14160-14376(-)$1	216	66	76	20.5357
GAAGCUGAAU	chrM:14201-14410(-)$1	209	100	110	20.5357
GAAGCUGAAU	chrM:14218-14424(-)$1	206	114	124	20.5357
UCAGCUAAAU	chrM:4345-4553(+)$1	208	64	74	13.0357
UAGGCAGAAU	chr5:134262613-134262877(+)$1	264	126	136	12.4999
gaugcuaaau	chr8:9629517-9629782(+)$1	265	172	182	16.2500
GAAGUUGAAU	chr5:134260120-134260395(+)$1	275	56	66	16.9642
AAAGCAGAAU	chr11:65270409-65270677(+)$1	268	36	46	14.4642
UCAGCUAAAU	chrM:4190-4428(+)$1	238	219	229	13.0357
AAGGCAGAAU	chr5:651661-651913(+)$1	252	77	87	11.6071
UAUUCUGAAU	chrM:14383-14600(-)$1	217	51	61	14.9999
GAAGCUGAAU	chrM:14176-14401(-)$1	225	91	101	20.5357
GAUUGUGAAU	chrM:12138-12347(+)$1	209	26	36	13.0357
GAAUCUGAAU	chr22:22890135-22890452(-)$1	317	218	228	18.2142
CAAGCUAAAU	chr11:62609005-62609323(-)$1	318	286	296	15.3571
gaaacggaau	chr19:893460-893688(+)$1	228	155	165	13.0357
GAAGCUGAAU	chrM:14247-14494(-)$1	247	184	194	20.5357
GAAGCUGAAU	chrM:14226-14447(-)$1	221	137	147	20.5357
UAUUCUGAAU	chr5:134259766-134260010(+)$1	244	171	181	14.9999
gaugcuaaau	chr8:9629592-9629846(+)$1	254	97	107	16.2500

#otherMatches

#Struct PSSM
::ddddnnnn	chrM:4353-4559(+)$1	206	56	66	13.0357
444ffffff2	chrM:14210-14418(-)$1	208	108	118	20.5357
gggglllggg	chrM:12117-12338(+)$1	221	47	57	13.0357
::ddddnnnn	chrM:4319-4542(+)$1	223	90	100	13.0357
ccceeeee::	chrM:14366-14583(-)$1	217	34	44	14.9999
gggglllggg	chrM:12055-12295(+)$1	240	109	119	13.0357
eeeeqqqqqq	chr11:65195640-65195898(+)$1	258	80	90	10.1785
::::::::::	chr4:174253048-174253320(-)$1	272	48	58	12.3214
:::ccc!!ff	chrM:14160-14376(-)$1	216	66	76	20.5357
444ffffff2	chrM:14201-14410(-)$1	209	100	110	20.5357
444ffffff2	chrM:14218-14424(-)$1	206	114	124	20.5357
::ddddnnnn	chrM:4345-4553(+)$1	208	64	74	13.0357
ffpppppppf	chr5:134262613-134262877(+)$1	264	126	136	12.4999
c333dddd22	chr8:9629517-9629782(+)$1	265	172	182	16.2500
RRDDDDKKII	chr5:134260120-134260395(+)$1	275	56	66	16.9642
ggggggg:::	chr11:65270409-65270677(+)$1	268	36	46	14.4642
\\\\\\\\\F	chrM:4190-4428(+)$1	238	219	229	13.0357
e333ccc22d	chr5:651661-651913(+)$1	252	77	87	11.6071
f[hhhhhhhh	chrM:14383-14600(-)$1	217	51	61	14.9999
:::ccc!!ff	chrM:14176-14401(-)$1	225	91	101	20.5357
gggglllggg	chrM:12138-12347(+)$1	209	26	36	13.0357
888ccc]ggg	chr22:22890135-22890452(-)$1	317	218	228	18.2142
::ddddmmmm	chr11:62609005-62609323(-)$1	318	286	296	15.3571
dddd]dddd:	chr19:893460-893688(+)$1	228	155	165	13.0357
444ffffff2	chrM:14247-14494(-)$1	247	184	194	20.5357
444ffffff2	chrM:14226-14447(-)$1	221	137	147	20.5357
ccc]bb]fff	chr5:134259766-134260010(+)$1	244	171	181	14.9999
c333dddd22	chr8:9629592-9629846(+)$1	254	97	107	16.2500

#DB
..((((....	chrM:4353-4559(+)$1	1	56	66	13.0357
...)))))).	chrM:14210-14418(-)$1	1	108	118	20.5357
((((...)))	chrM:12117-12338(+)$1	1	47	57	13.0357
..((((....	chrM:4319-4542(+)$1	1	90	100	13.0357
))))))))..	chrM:14366-14583(-)$1	1	34	44	14.9999
((((...)))	chrM:12055-12295(+)$1	1	109	119	13.0357
((((......	chr11:65195640-65195898(+)$1	1	80	90	10.1785
..........	chr4:174253048-174253320(-)$1	1	48	58	12.3214
...(((..((	chrM:14160-14376(-)$1	1	66	76	20.5357
...)))))).	chrM:14201-14410(-)$1	1	100	110	20.5357
...)))))).	chrM:14218-14424(-)$1	1	114	124	20.5357
..((((....	chrM:4345-4553(+)$1	1	64	74	13.0357
((.......)	chr5:134262613-134262877(+)$1	1	126	136	12.4999
)...))))..	chr8:9629517-9629782(+)$1	1	172	182	16.2500
..((((..((	chr5:134260120-134260395(+)$1	1	56	66	16.9642
)))))))...	chr11:65270409-65270677(+)$1	1	36	46	14.4642
.........)	chrM:4190-4428(+)$1	1	219	229	13.0357
)...)))..)	chr5:651661-651913(+)$1	1	77	87	11.6071
(.((((((((	chrM:14383-14600(-)$1	1	51	61	14.9999
...(((..((	chrM:14176-14401(-)$1	1	91	101	20.5357
((((...)))	chrM:12138-12347(+)$1	1	26	36	13.0357
...))).)))	chr22:22890135-22890452(-)$1	1	218	228	18.2142
..((((....	chr11:62609005-62609323(-)$1	1	286	296	15.3571
)))).)))).	chr19:893460-893688(+)$1	1	155	165	13.0357
...)))))).	chrM:14247-14494(-)$1	1	184	194	20.5357
...)))))).	chrM:14226-14447(-)$1	1	137	147	20.5357
))).)).)))	chr5:134259766-134260010(+)$1	1	171	181	14.9999
)...))))..	chr8:9629592-9629846(+)$1	1	97	107	16.2500

#PSSM
G : 0.42	U : 0.28	g : 0.14	A : 0.10	C : 0.03	
A : 0.71	C : 0.14	a : 0.14	
A : 0.57	U : 0.21	a : 0.07	G : 0.07	u : 0.07	
G : 0.60	U : 0.24	g : 0.10	a : 0.03	
C : 0.67	G : 0.10	c : 0.10	U : 0.07	a : 0.03	
U : 0.74	u : 0.10	A : 0.10	g : 0.03	
G : 0.67	A : 0.17	g : 0.07	a : 0.07	
A : 0.85	a : 0.14	
A : 0.85	a : 0.14	
U : 0.82	u : 0.10	C : 0.03	g : 0.03	

#score	437.142857142857
#seq	28
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_UTR_m3_run1.nuc.txt

#NT
GCUGCGGG	chr17:79812989-79813207(-)$1	218	9	17	14.3750
GCGGAGGG	chr6:167369764-167370029(-)$1	265	234	242	14.5000
GCGGCGGC	chr17:46052495-46052763(+)$1	268	212	220	14.0000
GGGGCGGG	chr1:11994685-11994925(+)$1	240	27	35	16.6250
GAGGAGGG	chr17:64224097-64224346(-)$1	249	140	148	12.6250
GCUGCGGG	chr17:79813007-79813226(-)$1	219	28	36	14.3750
CCGGCGGG	chr16:88851453-88851675(-)$1	222	150	158	13.1250
GGGGCCGG	chr17:27047493-27047697(+)$1	204	171	179	12.3750
GCGGCGGG	chr9:96009765-96010121(+)$1	356	139	147	17.8750
GAGGCGGG	chr20:17608143-17608393(-)$1	250	209	217	16.0000
GGGCCGGG	chr2:220408156-220408422(-)$1	266	135	143	12.7500
GAGGUGGG	chr3:133472368-133472645(+)$1	277	12	20	12.7500
gcggcggu	chr8:17767353-17767605(-)$1	252	206	214	13.6250
GGGGCCGG	chr17:27047497-27047725(+)$1	228	167	175	12.3750
GCGCCGGG	chr17:79918551-79918888(-)$1	337	149	157	14.0000
GAGGUGGG	chr9:117015063-117015311(+)$1	248	31	39	12.7500
GGGGUGGG	chr9:117044668-117044912(+)$1	244	193	201	13.3750
GCGGCUGG	chr17:80193757-80193980(+)$1	223	179	187	13.6250
GUGCCGGG	chr20:60911307-60911584(-)$1	277	100	108	11.6250
GGGGCGGG	chr11:1774751-1774973(-)$1	222	25	33	16.6250
gcggcggg	chr1:11986199-11986445(-)$1	246	27	35	17.8750
GGGGUGGG	chr11:118921645-118921920(-)$1	275	75	83	13.3750
GCUGCGGG	chr16:3767355-3767612(-)$1	257	114	122	14.3750
GCGGCGGC	chr6:119670186-119670424(-)$1	238	135	143	14.0000
GCUGCGGG	chr9:116831879-116832089(-)$1	210	188	196	14.3750
gcggcggG	chr8:57906013-57906363(-)$1	350	161	169	17.8750
GCGGCGGG	chr16:2802588-2802878(+)$1	290	239	247	17.8750
GGGGUGGG	chr20:31596252-31596465(+)$1	213	46	54	13.3750
GCUGAGGG	chr12:6879223-6879476(+)$1	253	28	36	11.0000
GCGGCGGC	chr9:35072260-35072512(-)$1	252	207	215	14.0000
GGGGCGGG	chr9:117027267-117027490(+)$1	223	176	184	16.6250
GCGGCGGC	chr22:41697625-41697877(+)$1	252	0	8	14.0000
GAGCCGGG	chr17:76969076-76969292(-)$1	216	173	181	12.1250
GCGGCGGG	chr7:2671530-2671798(+)$1	268	68	76	17.8750
GGGGCUGG	chr9:117002399-117002642(+)$1	243	213	221	12.3750
GCUGCGGG	chr2:220435942-220436229(-)$1	287	0	8	14.3750
GGGACGGG	chr9:117052428-117052708(+)$1	280	160	168	12.3750
guggcggg	chr1:43996623-43996864(+)$1	241	33	41	15.5000
GAGGAGGG	chr9:117027601-117027841(+)$1	240	0	8	12.6250

#otherMatches

#Struct PSSM
ellleeee	chr4:166300240-166300549(+)$1	309	232	240	17.8750
EEEEEBBK	chr17:79812989-79813207(-)$1	218	9	17	14.3750
cccppppp	chr6:167369764-167370029(-)$1	265	234	242	14.5000
e[cccmmm	chr17:46052495-46052763(+)$1	268	212	220	14.0000
gggggggp	chr1:11994685-11994925(+)$1	240	27	35	16.6250
dddd!!gg	chr17:64224097-64224346(-)$1	249	140	148	12.6250
:::dddda	chr17:79813007-79813226(-)$1	219	28	36	14.3750
:ddddooo	chr16:88851453-88851675(-)$1	222	150	158	13.1250
aeeeeeJJ	chr17:27047493-27047697(+)$1	204	171	179	12.3750
cc]dddd2	chr9:96009765-96010121(+)$1	356	139	147	17.8750
llccceee	chr20:17608143-17608393(-)$1	250	209	217	16.0000
========	chr2:220408156-220408422(-)$1	266	135	143	12.7500
dddd[eee	chr3:133472368-133472645(+)$1	277	12	20	12.7500
YYEEEEE~	chr8:17767353-17767605(-)$1	252	206	214	13.6250
aeeeeeJJ	chr17:27047497-27047725(+)$1	228	167	175	12.3750
bbHHHHHH	chr17:79918551-79918888(-)$1	337	149	157	14.0000
ffff[ddd	chr9:117015063-117015311(+)$1	248	31	39	12.7500
mmmbb]hh	chr9:117044668-117044912(+)$1	244	193	201	13.3750
CCCFFFFF	chr17:80193757-80193980(+)$1	223	179	187	13.6250
fffppppp	chr20:60911307-60911584(-)$1	277	100	108	11.6250
e[ccc[ff	chr11:1774751-1774973(-)$1	222	25	33	16.6250
A{EEEEEE	chr1:11986199-11986445(-)$1	246	27	35	17.8750
yyyyyyyy	chr11:118921645-118921920(-)$1	275	75	83	13.3750
dd22bb]d	chr16:3767355-3767612(-)$1	257	114	122	14.3750
eeeee]cc	chr6:119670186-119670424(-)$1	238	135	143	14.0000
cc]ccc33	chr9:116831879-116832089(-)$1	210	188	196	14.3750
]bbfffff	chr8:57906013-57906363(-)$1	350	161	169	17.8750
bb[bbqqq	chr16:2802588-2802878(+)$1	290	239	247	17.8750
fffbb[dd	chr20:31596252-31596465(+)$1	213	46	54	13.3750
]bbggggg	chr12:6879223-6879476(+)$1	253	28	36	11.0000
d]ffffff	chr9:35072260-35072512(-)$1	252	207	215	14.0000
JJJJ}CCC	chr9:117027267-117027490(+)$1	223	176	184	16.6250
DDDDDDDD	chr22:41697625-41697877(+)$1	252	0	8	14.0000
c]cccddd	chr17:76969076-76969292(-)$1	216	173	181	12.1250
bb]bb]a]	chr7:2671530-2671798(+)$1	268	68	76	17.8750
ggggggg]	chr9:117002399-117002642(+)$1	243	213	221	12.3750
:::FFFFF	chr2:220435942-220436229(-)$1	287	0	8	14.3750
GGGG}CCC	chr9:117052428-117052708(+)$1	280	160	168	12.3750
[ggggggg	chr1:43996623-43996864(+)$1	241	33	41	15.5000
::HHHHHH	chr9:117027601-117027841(+)$1	240	0	8	12.6250

#DB
(...))))	chr4:166300240-166300549(+)$1	1	232	240	17.8750
(((((((.	chr17:79812989-79813207(-)$1	1	9	17	14.3750
(((.....	chr6:167369764-167370029(-)$1	1	234	242	14.5000
(.(((...	chr17:46052495-46052763(+)$1	1	212	220	14.0000
(((((((.	chr1:11994685-11994925(+)$1	1	27	35	16.6250
((((..((	chr17:64224097-64224346(-)$1	1	140	148	12.6250
...(((((	chr17:79813007-79813226(-)$1	1	28	36	14.3750
.((((...	chr16:88851453-88851675(-)$1	1	150	158	13.1250
))))))))	chr17:27047493-27047697(+)$1	1	171	179	12.3750
)).)))).	chr9:96009765-96010121(+)$1	1	139	147	17.8750
..))))))	chr20:17608143-17608393(-)$1	1	209	217	16.0000
))))))))	chr2:220408156-220408422(-)$1	1	135	143	12.7500
((((.(((	chr3:133472368-133472645(+)$1	1	12	20	12.7500
..))))).	chr8:17767353-17767605(-)$1	1	206	214	13.6250
))))))))	chr17:27047497-27047725(+)$1	1	167	175	12.3750
))))))))	chr17:79918551-79918888(-)$1	1	149	157	14.0000
((((.(((	chr9:117015063-117015311(+)$1	1	31	39	12.7500
...)).))	chr9:117044668-117044912(+)$1	1	193	201	13.3750
))))))))	chr17:80193757-80193980(+)$1	1	179	187	13.6250
(((.....	chr20:60911307-60911584(-)$1	1	100	108	11.6250
(.(((.((	chr11:1774751-1774973(-)$1	1	25	33	16.6250
(.((((((	chr1:11986199-11986445(-)$1	1	27	35	17.8750
........	chr11:118921645-118921920(-)$1	1	75	83	13.3750
))..)).)	chr16:3767355-3767612(-)$1	1	114	122	14.3750
))))).))	chr6:119670186-119670424(-)$1	1	135	143	14.0000
)).)))..	chr9:116831879-116832089(-)$1	1	188	196	14.3750
.)))))))	chr8:57906013-57906363(-)$1	1	161	169	17.8750
((.((...	chr16:2802588-2802878(+)$1	1	239	247	17.8750
(((((.((	chr20:31596252-31596465(+)$1	1	46	54	13.3750
.))(((((	chr12:6879223-6879476(+)$1	1	28	36	11.0000
).))))))	chr9:35072260-35072512(-)$1	1	207	215	14.0000
)))).)))	chr9:117027267-117027490(+)$1	1	176	184	16.6250
((((((((	chr22:41697625-41697877(+)$1	1	0	8	14.0000
).))))))	chr17:76969076-76969292(-)$1	1	173	181	12.1250
)).)).).	chr7:2671530-2671798(+)$1	1	68	76	17.8750
))))))).	chr9:117002399-117002642(+)$1	1	213	221	12.3750
...(((((	chr2:220435942-220436229(-)$1	1	0	8	14.3750
)))).)))	chr9:117052428-117052708(+)$1	1	160	168	12.3750
.(((((((	chr1:43996623-43996864(+)$1	1	33	41	15.5000
..((((((	chr9:117027601-117027841(+)$1	1	0	8	12.6250

#PSSM
G : 0.85	g : 0.12	C : 0.02	
C : 0.42	G : 0.27	A : 0.15	c : 0.10	U : 0.02	u : 0.02	
G : 0.72	U : 0.15	g : 0.12	
G : 0.75	g : 0.12	C : 0.10	A : 0.02	
C : 0.65	c : 0.12	U : 0.12	A : 0.10	
G : 0.77	g : 0.12	C : 0.05	U : 0.05	
G : 0.87	g : 0.12	
G : 0.80	C : 0.10	g : 0.07	u : 0.02	

#score	573.2500000000001
#seq	40
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_UTR_m2_run2.nuc.txt

#NT
UUUAA	chr8:126034268-126034492(+)$1	224	95	100	15.0000
UUUAA	chr7:66420998-66421301(+)$1	303	132	137	15.0000
UUUAA	chr19:1434988-1435205(+)$1	217	89	94	15.0000
UUUAA	chr1:241793093-241793333(-)$1	240	12	17	15.0000
UUUAA	chr16:89017732-89018016(-)$1	284	88	93	15.0000
UUUAA	chr4:762599-762850(-)$1	251	130	135	15.0000
UUUAA	chr8:126034292-126034565(+)$1	273	71	76	15.0000
UUUAA	chr15:34671240-34671506(-)$1	266	17	22	15.0000
UUUAA	chr5:40826123-40826381(-)$1	258	187	192	15.0000
UUUAA	chr15:83697324-83697635(-)$1	311	91	96	15.0000
UUUAA	chr4:762434-762675(-)$1	241	203	208	15.0000
UUUAA	chr7:26229787-26230067(-)$1	280	93	98	15.0000
UUUAA	chr17:45699296-45699599(+)$1	303	286	291	15.0000
UUUAA	chrX:110931139-110931398(+)$1	259	108	113	15.0000
UUUAA	chr6:111216018-111216314(+)$1	296	248	253	15.0000
UUUAA	chr1:155885120-155885359(-)$1	239	103	108	15.0000
UUUAA	chr2:178087689-178087945(+)$1	256	223	228	15.0000
UUUAA	chr19:1435005-1435225(+)$1	220	72	77	15.0000
UUUAA	chr5:110833265-110833565(-)$1	300	8	13	15.0000
UUUAA	chr1:155885159-155885383(-)$1	224	127	132	15.0000
UUUAA	chr15:34817437-34817732(-)$1	295	8	13	15.0000
UUUAA	chrX:135956575-135956803(-)$1	228	67	72	15.0000
uuuaa	chr7:44048987-44049274(-)$1	287	13	18	15.0000
UUUAA	chr12:22841057-22841308(+)$1	251	145	150	15.0000
UUUAA	chr1:241796403-241796645(-)$1	242	99	104	15.0000
UUUAA	chr1:241796464-241796727(-)$1	263	7	12	15.0000
UUUAA	chr9:95297999-95298333(+)$1	334	12	17	15.0000
UUUAA	chr17:45699405-45699687(+)$1	282	177	182	15.0000
UUUAA	chr17:57281187-57281416(+)$1	229	82	87	15.0000
UUUAA	chr9:134133373-134133620(-)$1	247	147	152	15.0000
UUUAA	chr19:1435025-1435237(+)$1	212	52	57	15.0000
UUUAA	chrX:135956554-135956775(-)$1	221	39	44	15.0000
UUUAA	chr15:49032587-49032892(-)$1	305	115	120	15.0000
uuuaa	chr1:192989370-192989667(-)$1	297	49	54	15.0000
UUUAA	chr4:1943239-1943506(+)$1	267	41	46	15.0000
UUUAA	chr5:86687606-86687879(-)$1	273	71	76	15.0000
UUUAA	chr10:35298778-35299018(-)$1	240	96	101	15.0000
UUUAA	chr7:99162136-99162399(+)$1	263	229	234	15.0000
UUUAA	chr14:104152090-104152366(+)$1	276	151	156	15.0000
UUUAA	chr1:241792482-241792755(-)$1	273	89	94	15.0000
uuuaa	chr1:21102001-21102260(-)$1	259	59	64	15.0000
UUUAA	chr2:175006448-175006754(-)$1	306	11	16	15.0000
UUUAA	chr9:114985260-114985487(-)$1	227	1	6	15.0000
UUUAA	chr1:93619260-93619517(-)$1	257	11	16	15.0000
UUUAA	chr7:99162199-99162459(+)$1	260	166	171	15.0000
UUUAA	chr21:38471281-38471593(+)$1	312	98	103	15.0000
UUUAA	chr7:26229492-26229759(-)$1	267	100	105	15.0000

#otherMatches

#Struct PSSM
iii66	chr4:79835998-79836229(+)$1	231	48	53	15.0000
ssssg	chr8:126034268-126034492(+)$1	224	95	100	15.0000
ffff:	chr7:66420998-66421301(+)$1	303	132	137	15.0000
qqqqq	chr19:1434988-1435205(+)$1	217	89	94	15.0000
DNNNN	chr1:241793093-241793333(-)$1	240	12	17	15.0000
EEE::	chr16:89017732-89018016(-)$1	284	88	93	15.0000
eeemm	chr4:762599-762850(-)$1	251	130	135	15.0000
ggggg	chr8:126034292-126034565(+)$1	273	71	76	15.0000
:::::	chr15:34671240-34671506(-)$1	266	17	22	15.0000
iiii:	chr5:40826123-40826381(-)$1	258	187	192	15.0000
iiii4	chr15:83697324-83697635(-)$1	311	91	96	15.0000
b7777	chr4:762434-762675(-)$1	241	203	208	15.0000
vvvvv	chr7:26229787-26230067(-)$1	280	93	98	15.0000
eeeee	chr17:45699296-45699599(+)$1	303	286	291	15.0000
eee::	chrX:110931139-110931398(+)$1	259	108	113	15.0000
uuuuu	chr6:111216018-111216314(+)$1	296	248	253	15.0000
:::::	chr1:155885120-155885359(-)$1	239	103	108	15.0000
:::::	chr2:178087689-178087945(+)$1	256	223	228	15.0000
qqqqq	chr19:1435005-1435225(+)$1	220	72	77	15.0000
gmmmm	chr5:110833265-110833565(-)$1	300	8	13	15.0000
:::::	chr1:155885159-155885383(-)$1	224	127	132	15.0000
ETTTT	chr15:34817437-34817732(-)$1	295	8	13	15.0000
gggg#	chrX:135956575-135956803(-)$1	228	67	72	15.0000
ggooo	chr7:44048987-44049274(-)$1	287	13	18	15.0000
:::::	chr12:22841057-22841308(+)$1	251	145	150	15.0000
ppppp	chr1:241796403-241796645(-)$1	242	99	104	15.0000
ooooe	chr1:241796464-241796727(-)$1	263	7	12	15.0000
GGGGG	chr9:95297999-95298333(+)$1	334	12	17	15.0000
fffff	chr17:45699405-45699687(+)$1	282	177	182	15.0000
qqqdd	chr17:57281187-57281416(+)$1	229	82	87	15.0000
eee55	chr9:134133373-134133620(-)$1	247	147	152	15.0000
qqqqq	chr19:1435025-1435237(+)$1	212	52	57	15.0000
ffff#	chrX:135956554-135956775(-)$1	221	39	44	15.0000
ddd##	chr15:49032587-49032892(-)$1	305	115	120	15.0000
BTTTT	chr1:192989370-192989667(-)$1	297	49	54	15.0000
fffff	chr4:1943239-1943506(+)$1	267	41	46	15.0000
CCMMM	chr5:86687606-86687879(-)$1	273	71	76	15.0000
IHHHH	chr10:35298778-35299018(-)$1	240	96	101	15.0000
FFF}D	chr7:99162136-99162399(+)$1	263	229	234	15.0000
c::::	chr14:104152090-104152366(+)$1	276	151	156	15.0000
2dddd	chr1:241792482-241792755(-)$1	273	89	94	15.0000
ooooo	chr1:21102001-21102260(-)$1	259	59	64	15.0000
fffff	chr2:175006448-175006754(-)$1	306	11	16	15.0000
:::EE	chr9:114985260-114985487(-)$1	227	1	6	15.0000
xxxxx	chr1:93619260-93619517(-)$1	257	11	16	15.0000
HHHH:	chr7:99162199-99162459(+)$1	260	166	171	15.0000
fffff	chr21:38471281-38471593(+)$1	312	98	103	15.0000
LLFFF	chr7:26229492-26229759(-)$1	267	100	105	15.0000

#DB
)))..	chr4:79835998-79836229(+)$1	1	48	53	15.0000
....)	chr8:126034268-126034492(+)$1	1	95	100	15.0000
)))).	chr7:66420998-66421301(+)$1	1	132	137	15.0000
.....	chr19:1434988-1435205(+)$1	1	89	94	15.0000
(....	chr1:241793093-241793333(-)$1	1	12	17	15.0000
(((..	chr16:89017732-89018016(-)$1	1	88	93	15.0000
(((..	chr4:762599-762850(-)$1	1	130	135	15.0000
)))))	chr8:126034292-126034565(+)$1	1	71	76	15.0000
.....	chr15:34671240-34671506(-)$1	1	17	22	15.0000
)))).	chr5:40826123-40826381(-)$1	1	187	192	15.0000
)))).	chr15:83697324-83697635(-)$1	1	91	96	15.0000
)....	chr4:762434-762675(-)$1	1	203	208	15.0000
.....	chr7:26229787-26230067(-)$1	1	93	98	15.0000
)))))	chr17:45699296-45699599(+)$1	1	286	291	15.0000
)))..	chrX:110931139-110931398(+)$1	1	108	113	15.0000
.....	chr6:111216018-111216314(+)$1	1	248	253	15.0000
.....	chr1:155885120-155885359(-)$1	1	103	108	15.0000
.....	chr2:178087689-178087945(+)$1	1	223	228	15.0000
.....	chr19:1435005-1435225(+)$1	1	72	77	15.0000
(....	chr5:110833265-110833565(-)$1	1	8	13	15.0000
.....	chr1:155885159-155885383(-)$1	1	127	132	15.0000
(....	chr15:34817437-34817732(-)$1	1	8	13	15.0000
((((.	chrX:135956575-135956803(-)$1	1	67	72	15.0000
((...	chr7:44048987-44049274(-)$1	1	13	18	15.0000
.....	chr12:22841057-22841308(+)$1	1	145	150	15.0000
.....	chr1:241796403-241796645(-)$1	1	99	104	15.0000
....)	chr1:241796464-241796727(-)$1	1	7	12	15.0000
(((((	chr9:95297999-95298333(+)$1	1	12	17	15.0000
)))))	chr17:45699405-45699687(+)$1	1	177	182	15.0000
...))	chr17:57281187-57281416(+)$1	1	82	87	15.0000
)))..	chr9:134133373-134133620(-)$1	1	147	152	15.0000
.....	chr19:1435025-1435237(+)$1	1	52	57	15.0000
((((.	chrX:135956554-135956775(-)$1	1	39	44	15.0000
(((..	chr15:49032587-49032892(-)$1	1	115	120	15.0000
(....	chr1:192989370-192989667(-)$1	1	49	54	15.0000
)))))	chr4:1943239-1943506(+)$1	1	41	46	15.0000
((...	chr5:86687606-86687879(-)$1	1	71	76	15.0000
(((((	chr10:35298778-35299018(-)$1	1	96	101	15.0000
))).)	chr7:99162136-99162399(+)$1	1	229	234	15.0000
)....	chr14:104152090-104152366(+)$1	1	151	156	15.0000
.))))	chr1:241792482-241792755(-)$1	1	89	94	15.0000
.....	chr1:21102001-21102260(-)$1	1	59	64	15.0000
(((((	chr2:175006448-175006754(-)$1	1	11	16	15.0000
...((	chr9:114985260-114985487(-)$1	1	1	6	15.0000
.....	chr1:93619260-93619517(-)$1	1	11	16	15.0000
)))).	chr7:99162199-99162459(+)$1	1	166	171	15.0000
(((((	chr21:38471281-38471593(+)$1	1	98	103	15.0000
..(((	chr7:26229492-26229759(-)$1	1	100	105	15.0000

#PSSM
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
A : 0.93	a : 0.06	
A : 0.93	a : 0.06	

#score	720.0000000000001
#seq	48
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_transcript_m3_run2.nuc.txt

#NT
GCUGAGA	chr19:2808070-2808368(+)$1	298	35	42	10.3518
GCUGGGA	chr19:39125673-39125962(+)$1	289	190	197	14.7962
ACUGGGG	chr1:19565537-19565823(-)$1	286	51	58	9.3333
GGUGGGA	chr17:80055331-80055580(-)$1	249	213	220	11.6481
GCUGGCA	chr7:100228286-100228591(-)$1	305	212	219	11.1851
GCUGGGG	chr12:132392466-132392734(+)$1	268	224	231	13.4074
GCUGGGC	chrX:151125423-151125723(-)$1	300	19	26	13.8703
GCUGAGA	chr12:49435248-49435486(-)$1	238	171	178	10.3518
GCUGGGA	chr22:21345237-21345488(+)$1	251	211	218	14.7962
GCUGGCC	chr17:73774921-73775216(-)$1	295	20	27	10.2592
GGUGGGG	chr3:38051218-38051463(-)$1	245	102	109	10.2592
GCUGGGC	chr19:35761722-35761961(+)$1	239	53	60	13.8703
GCUGGUG	chr22:19708310-19708611(+)$1	301	117	124	9.6111
GAUGGGC	chr7:65440826-65441094(-)$1	268	177	184	10.5370
GAUGGGA	chr1:249148311-249148560(-)$1	249	107	114	11.4629
GCUGGAG	chr9:134354032-134354307(+)$1	275	3	10	9.8888
GCUGGGA	chr19:33134296-33134553(-)$1	257	236	243	14.7962
GGUGGGC	chr14:23538493-23538769(-)$1	276	113	120	10.7222
GCUGGGU	chr6:32084027-32084310(-)$1	283	68	75	12.8518
gccggga	chr3:43733053-43733333(+)$1	280	78	85	10.2592
CCUGGGG	chr11:43421489-43421811(+)$1	322	269	276	9.2407
GGUGGGC	chr16:88723900-88724168(-)$1	268	111	118	10.7222
GCAGGGA	chr15:45008565-45008828(+)$1	263	104	111	10.2592
UCUGGGA	chr19:34872363-34872605(+)$1	242	53	60	10.6296
GGUGGGA	chr20:62152203-62152518(+)$1	315	63	70	11.6481
GCUGGAG	chr3:195789623-195789868(-)$1	245	102	109	9.8888
GCUGGUC	chr12:120600436-120600691(-)$1	255	56	63	10.0740
GCUGGAA	chr1:173835122-173835359(-)$1	237	29	36	11.2777
GAUGGGC	chr7:6523132-6523381(-)$1	249	205	212	10.5370
GCUGGAC	chr19:52723105-52723371(+)$1	266	0	7	10.3518
GCUGGGC	chr1:22170363-22170638(-)$1	275	144	151	13.8703
GAUGGGU	chr19:13050753-13050969(+)$1	216	69	76	9.5185
GCUGGGG	chr16:2135540-2135810(+)$1	270	38	45	13.4074
ACUGGGC	chr19:7975626-7975899(+)$1	273	85	92	9.7962
GCGGGGA	chr3:50648818-50649112(-)$1	294	23	30	10.3518
gcugggc	chr12:58142742-58143023(-)$1	281	236	243	13.8703
GCUGGGC	chr12:125398872-125399230(-)$1	358	112	119	13.8703
gcgggga	chr10:11653028-11653297(-)$1	269	117	124	10.3518
GGUGGGU	chr19:18548142-18548395(-)$1	253	6	13	9.7037
GCUGAGC	chr16:2086811-2087100(+)$1	289	112	119	9.4259
GAUGGGA	chr19:3196209-3196463(+)$1	254	161	168	11.4629
GCUGGGA	chr22:19711136-19711422(+)$1	286	46	53	14.7962
GCUGGGA	chr1:36644565-36644822(+)$1	257	199	206	14.7962
GCUGGCC	chr1:228328007-228328239(+)$1	232	10	17	10.2592
GCUGGCG	chr20:61557457-61557720(-)$1	263	24	31	9.7962
GCUGGGA	chr15:42565172-42565458(-)$1	286	117	124	14.7962
CCUGGGA	chr11:64534453-64534737(-)$1	284	21	28	10.6296
GCUGGGG	chrX:153587913-153588148(-)$1	235	55	62	13.4074
GCUGGAA	chr10:74034113-74034373(+)$1	260	126	133	11.2777
ACUGGGA	chr12:57892335-57892589(+)$1	254	115	122	10.7222
GUUGGGA	chr5:177633493-177633743(+)$1	250	99	106	11.0925
UCUGGGA	chr1:24122974-24123268(-)$1	294	258	265	10.6296
GGUGGGA	chr1:226253389-226253695(+)$1	306	132	139	11.6481

#otherMatches

#Struct PSSM
gggggg2	chr7:26241542-26241802(+)$1	260	236	243	12.8518
mmmmeee	chr19:2808070-2808368(+)$1	298	35	42	10.3518
eeemmmm	chr19:39125673-39125962(+)$1	289	190	197	14.7962
:JJJJJJ	chr1:19565537-19565823(-)$1	286	51	58	9.3333
IIIIIII	chr17:80055331-80055580(-)$1	249	213	220	11.6481
eeeee[c	chr7:100228286-100228591(-)$1	305	212	219	11.1851
oobbfff	chr12:132392466-132392734(+)$1	268	224	231	13.4074
neeeee2	chrX:151125423-151125723(-)$1	300	19	26	13.8703
d22ccc:	chr12:49435248-49435486(-)$1	238	171	178	10.3518
333bb]d	chr22:21345237-21345488(+)$1	251	211	218	14.7962
HHHHHHH	chr17:73774921-73775216(-)$1	295	20	27	10.2592
ccc[ddd	chr3:38051218-38051463(-)$1	245	102	109	10.2592
ii[ffff	chr19:35761722-35761961(+)$1	239	53	60	13.8703
===%%%%	chr22:19708310-19708611(+)$1	301	117	124	9.6111
d22dddd	chr7:65440826-65441094(-)$1	268	177	184	10.5370
&&&&&&g	chr1:249148311-249148560(-)$1	249	107	114	11.4629
BCCC{Ae	chr9:134354032-134354307(+)$1	275	3	10	9.8888
CCC}GGG	chr19:33134296-33134553(-)$1	257	236	243	14.7962
fffff33	chr14:23538493-23538769(-)$1	276	113	120	10.7222
h[dddd!	chr6:32084027-32084310(-)$1	283	68	75	12.8518
ggggggg	chr3:43733053-43733333(+)$1	280	78	85	10.2592
cpppppp	chr11:43421489-43421811(+)$1	322	269	276	9.2407
fffff[a	chr16:88723900-88724168(-)$1	268	111	118	10.7222
2eeeee:	chr15:45008565-45008828(+)$1	263	104	111	10.2592
qqqqfff	chr19:34872363-34872605(+)$1	242	53	60	10.6296
JJJJJJJ	chr20:62152203-62152518(+)$1	315	63	70	11.6481
dd]a]dd	chr3:195789623-195789868(-)$1	245	102	109	9.8888
ccc]ccc	chr12:120600436-120600691(-)$1	255	56	63	10.0740
hhhgggg	chr1:173835122-173835359(-)$1	237	29	36	11.2777
>>>>>>>	chr7:6523132-6523381(-)$1	249	205	212	10.5370
dddd[bb	chr19:52723105-52723371(+)$1	266	0	7	10.3518
ddddccc	chr1:22170363-22170638(-)$1	275	144	151	13.8703
dd]ccc]	chr19:13050753-13050969(+)$1	216	69	76	9.5185
cccoooo	chr16:2135540-2135810(+)$1	270	38	45	13.4074
CCLLLEE	chr19:7975626-7975899(+)$1	273	85	92	9.7962
GGGGGGG	chr3:50648818-50649112(-)$1	294	23	30	10.3518
ffffff[	chr12:58142742-58143023(-)$1	281	236	243	13.8703
ccc[ccc	chr12:125398872-125399230(-)$1	358	112	119	13.8703
$iiiiii	chr10:11653028-11653297(-)$1	269	117	124	10.3518
[bb!!gg	chr19:18548142-18548395(-)$1	253	6	13	9.7037
fffmmmm	chr16:2086811-2087100(+)$1	289	112	119	9.4259
eeeee]a	chr19:3196209-3196463(+)$1	254	161	168	11.4629
ddd6666	chr22:19711136-19711422(+)$1	286	46	53	14.7962
fff333g	chr1:36644565-36644822(+)$1	257	199	206	14.7962
dd[cccd	chr1:228328007-228328239(+)$1	232	10	17	10.2592
CCCKKA{	chr20:61557457-61557720(-)$1	263	24	31	9.7962
IIIIII{	chr15:42565172-42565458(-)$1	286	117	124	14.7962
:::FFFF	chr11:64534453-64534737(-)$1	284	21	28	10.6296
GGGGGG{	chrX:153587913-153588148(-)$1	235	55	62	13.4074
EEEEYYD	chr10:74034113-74034373(+)$1	260	126	133	11.2777
44ccc44	chr12:57892335-57892589(+)$1	254	115	122	10.7222
hhh333d	chr5:177633493-177633743(+)$1	250	99	106	11.0925
ebbqqqq	chr1:24122974-24123268(-)$1	294	258	265	10.6296
eeeoooo	chr1:226253389-226253695(+)$1	306	132	139	11.6481

#DB
)))))).	chr7:26241542-26241802(+)$1	1	236	243	12.8518
....)))	chr19:2808070-2808368(+)$1	1	35	42	10.3518
(((....	chr19:39125673-39125962(+)$1	1	190	197	14.7962
.((((((	chr1:19565537-19565823(-)$1	1	51	58	9.3333
)))))))	chr17:80055331-80055580(-)$1	1	213	220	11.6481
(((((.(	chr7:100228286-100228591(-)$1	1	212	219	11.1851
..)))))	chr12:132392466-132392734(+)$1	1	224	231	13.4074
.))))).	chrX:151125423-151125723(-)$1	1	19	26	13.8703
)..))).	chr12:49435248-49435486(-)$1	1	171	178	10.3518
...)).)	chr22:21345237-21345488(+)$1	1	211	218	14.7962
(((((((	chr17:73774921-73775216(-)$1	1	20	27	10.2592
(((.(((	chr3:38051218-38051463(-)$1	1	102	109	10.2592
((.((((	chr19:35761722-35761961(+)$1	1	53	60	13.8703
(((....	chr22:19708310-19708611(+)$1	1	117	124	9.6111
)..))))	chr7:65440826-65441094(-)$1	1	177	184	10.5370
......(	chr1:249148311-249148560(-)$1	1	107	114	11.4629
((((.((	chr9:134354032-134354307(+)$1	1	3	10	9.8888
))).)))	chr19:33134296-33134553(-)$1	1	236	243	14.7962
)))))..	chr14:23538493-23538769(-)$1	1	113	120	10.7222
(.((((.	chr6:32084027-32084310(-)$1	1	68	75	12.8518
(((((((	chr3:43733053-43733333(+)$1	1	78	85	10.2592
(......	chr11:43421489-43421811(+)$1	1	269	276	9.2407
(((((.(	chr16:88723900-88724168(-)$1	1	111	118	10.7222
.))))).	chr15:45008565-45008828(+)$1	1	104	111	10.2592
....)))	chr19:34872363-34872605(+)$1	1	53	60	10.6296
(((((((	chr20:62152203-62152518(+)$1	1	63	70	11.6481
)).).))	chr3:195789623-195789868(-)$1	1	102	109	9.8888
))).)))	chr12:120600436-120600691(-)$1	1	56	63	10.0740
(((((((	chr1:173835122-173835359(-)$1	1	29	36	11.2777
.......	chr7:6523132-6523381(-)$1	1	205	212	10.5370
((((.((	chr19:52723105-52723371(+)$1	1	0	7	10.3518
))))(((	chr1:22170363-22170638(-)$1	1	144	151	13.8703
)).))).	chr19:13050753-13050969(+)$1	1	69	76	9.5185
(((....	chr16:2135540-2135810(+)$1	1	38	45	13.4074
((...((	chr19:7975626-7975899(+)$1	1	85	92	9.7962
(((((((	chr3:50648818-50649112(-)$1	1	23	30	10.3518
((((((.	chr12:58142742-58143023(-)$1	1	236	243	13.8703
(((.(((	chr12:125398872-125399230(-)$1	1	112	119	13.8703
.((((((	chr10:11653028-11653297(-)$1	1	117	124	10.3518
.((..((	chr19:18548142-18548395(-)$1	1	6	13	9.7037
(((....	chr16:2086811-2087100(+)$1	1	112	119	9.4259
))))).)	chr19:3196209-3196463(+)$1	1	161	168	11.4629
)))....	chr22:19711136-19711422(+)$1	1	46	53	14.7962
)))...)	chr1:36644565-36644822(+)$1	1	199	206	14.7962
((.((((	chr1:228328007-228328239(+)$1	1	10	17	10.2592
(((..(.	chr20:61557457-61557720(-)$1	1	24	31	9.7962
((((((.	chr15:42565172-42565458(-)$1	1	117	124	14.7962
...((((	chr11:64534453-64534737(-)$1	1	21	28	10.6296
((((((.	chrX:153587913-153588148(-)$1	1	55	62	13.4074
))))..)	chr10:74034113-74034373(+)$1	1	126	133	11.2777
..)))..	chr12:57892335-57892589(+)$1	1	115	122	10.7222
)))...)	chr5:177633493-177633743(+)$1	1	99	106	11.0925
(((....	chr1:24122974-24123268(-)$1	1	258	265	10.6296
(((....	chr1:226253389-226253695(+)$1	1	132	139	11.6481

#PSSM
G : 0.81	A : 0.05	g : 0.05	C : 0.03	U : 0.03	
C : 0.70	G : 0.12	A : 0.09	c : 0.05	U : 0.01	
U : 0.90	c : 0.01	A : 0.01	G : 0.01	u : 0.01	g : 0.01	
G : 0.94	g : 0.05	
G : 0.88	A : 0.05	g : 0.05	
G : 0.74	A : 0.09	C : 0.07	g : 0.05	U : 0.03	
A : 0.42	C : 0.25	G : 0.18	U : 0.07	a : 0.03	c : 0.01	

#score	621.2222222222211
#seq	54
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_UTR_m3_run1.nuc.txt

#NT
CCCCACC	chr3:48638737-48639000(-)$1	263	43	50	17.1940
CCCCAUC	chr6:30692043-30692282(+)$1	239	139	146	13.6119
CCCCAGC	chr1:27633034-27633287(+)$1	253	42	49	13.7611
UCCCACC	chr2:242168568-242168811(-)$1	243	202	209	13.0895
CCCCGCC	chr12:124970897-124971172(-)$1	275	4	11	13.5373
CCCCAGC	chrX:153588344-153588551(-)$1	207	117	124	13.7611
CCCCACC	chr17:41167357-41167633(-)$1	276	211	218	17.1940
CCCCAGC	chr3:127790002-127790282(+)$1	280	231	238	13.7611
CCCCAUC	chr11:65820046-65820281(+)$1	235	202	209	13.6119
GCCCACC	chrX:153590587-153590799(-)$1	212	104	111	13.1641
CCCCACC	chr8:124220016-124220285(+)$1	269	78	85	17.1940
GCCCACC	chrX:153585729-153585981(-)$1	252	145	152	13.1641
CCCCACC	chr2:98272483-98272779(-)$1	296	256	263	17.1940
CCCCACC	chr5:154195530-154195770(+)$1	240	110	117	17.1940
CACCACC	chr17:79477994-79478226(-)$1	232	195	202	13.2388
CACCACC	chr8:144694852-144695147(-)$1	295	123	130	13.2388
CCccacc	chr1:43148049-43148266(+)$1	217	99	106	17.1940
CCCCACC	chr3:53275119-53275362(-)$1	243	63	70	17.1940
CCCCCCC	chr12:53856229-53856452(+)$1	223	48	55	13.4626
CCCCAUC	chr1:46782153-46782408(+)$1	255	60	67	13.6119
GCCCACC	chr16:2258663-2258914(+)$1	251	8	15	13.1641
CACCACC	chr7:5567687-5567912(-)$1	225	199	206	13.2388
CCUCACC	chr3:58154079-58154333(+)$1	254	12	19	12.9402
ccccucc	chr1:178995056-178995325(+)$1	269	91	98	13.7611
CCCCAAC	chr16:2257092-2257318(+)$1	226	9	16	13.3880
CCCCUCC	chr19:56186564-56186856(+)$1	292	54	61	13.7611
CCCCACC	chr3:52027612-52027866(-)$1	254	142	149	17.1940
CCCCUCC	chr19:1220496-1220817(+)$1	321	40	47	13.7611
ACCCACC	chr11:71146461-71146724(-)$1	263	196	203	13.0149
CCCCACC	chr1:12035006-12035302(+)$1	296	163	170	17.1940
CCCCUCC	chr6:42988755-42989015(+)$1	260	66	73	13.7611
GCCCACC	chrX:153590343-153590562(-)$1	219	62	69	13.1641
CCCCGCC	chrX:153590708-153590952(-)$1	244	49	56	13.5373
CCCCACC	chr1:22150710-22150932(-)$1	222	181	188	17.1940
CCCCAAC	chr12:124809629-124809872(-)$1	243	10	17	13.3880
ACCCACC	chr5:154196636-154196876(+)$1	240	174	181	13.0149
CACCACC	chr7:5567659-5567887(-)$1	228	174	181	13.2388
ccccacc	chr14:105886163-105886483(+)$1	320	282	289	17.1940
CCCCAUC	chr12:49663515-49663787(+)$1	272	77	84	13.6119
CUCCACC	chr17:42397487-42397736(-)$1	249	111	118	13.0895
CCCCACC	chr17:75494732-75495034(+)$1	302	118	125	17.1940
CACCACC	chr17:79477924-79478193(-)$1	269	162	169	13.2388
CCCCACC	chr19:47113322-47113567(+)$1	245	66	73	17.1940
CCCCACC	chrX:153577749-153577967(-)$1	218	12	19	17.1940
CCCCAGC	chr8:101733575-101733819(-)$1	244	22	29	13.7611
CCCCAUC	chr19:3061143-3061356(-)$1	213	87	94	13.6119
CCCCGCC	chr16:70415408-70415670(-)$1	262	194	201	13.5373
CCUCACC	chr19:39220323-39220551(+)$1	228	70	77	12.9402
CCCCUCC	chr16:2222365-2222587(+)$1	222	17	24	13.7611
CCCCGCC	chrX:47444233-47444482(+)$1	249	192	199	13.5373
CCCCAGC	chr10:75506504-75506800(+)$1	296	131	138	13.7611
CGCCACC	chr17:2614801-2615050(-)$1	249	88	95	12.9402
CCCCAGC	chr11:75283335-75283590(+)$1	255	189	196	13.7611
UCCCACC	chr1:228681799-228682068(+)$1	269	7	14	13.0895
CCUCACC	chr3:53260671-53260881(-)$1	210	81	88	12.9402
CUCCACC	chr16:89627538-89627742(+)$1	204	87	94	13.0895
CCCCAGC	chr19:10942044-10942322(+)$1	278	125	132	13.7611
CCUCACC	chr19:10942300-10942587(+)$1	287	187	194	12.9402
CCCCCCC	chr12:6635354-6635632(+)$1	278	118	125	13.4626
CUCCACC	chr5:10307693-10307982(-)$1	289	58	65	13.0895
UCCCACC	chr8:37917492-37917791(+)$1	299	20	27	13.0895
CCCCUCC	chr19:2754911-2755199(-)$1	288	124	131	13.7611
CCCCACC	chr3:47467523-47467757(-)$1	234	76	83	17.1940
CCCCCCC	chr7:150069436-150069672(+)$1	236	2	9	13.4626
CCCCACC	chr20:57484475-57484726(+)$1	251	91	98	17.1940
CCCCUCC	chr10:5951033-5951354(+)$1	321	158	165	13.7611

#otherMatches

#Struct PSSM
iiiiiii	chr12:49522438-49522713(-)$1	275	180	187	12.9402
PPEEEEE	chr3:48638737-48639000(-)$1	263	43	50	17.1940
pppppbb	chr6:30692043-30692282(+)$1	239	139	146	13.6119
ceeeee2	chr1:27633034-27633287(+)$1	253	42	49	13.7611
:::::::	chr2:242168568-242168811(-)$1	243	202	209	13.0895
DBB{BBK	chr12:124970897-124971172(-)$1	275	4	11	13.5373
CCC{DDD	chrX:153588344-153588551(-)$1	207	117	124	13.7611
FF:::::	chr17:41167357-41167633(-)$1	276	211	218	17.1940
b[dddd[	chr3:127790002-127790282(+)$1	280	231	238	13.7611
DDDD}BB	chr11:65820046-65820281(+)$1	235	202	209	13.6119
::eeeee	chrX:153590587-153590799(-)$1	212	104	111	13.1641
eeebbbb	chr8:124220016-124220285(+)$1	269	78	85	17.1940
bb[dddd	chrX:153585729-153585981(-)$1	252	145	152	13.1641
DYYGGGG	chr2:98272483-98272779(-)$1	296	256	263	17.1940
ddd]fff	chr5:154195530-154195770(+)$1	240	110	117	17.1940
hhhh:::	chr17:79477994-79478226(-)$1	232	195	202	13.2388
ppppppd	chr8:144694852-144695147(-)$1	295	123	130	13.2388
ddd22bb	chr1:43148049-43148266(+)$1	217	99	106	17.1940
333ccch	chr3:53275119-53275362(-)$1	243	63	70	17.1940
dcccooo	chr12:53856229-53856452(+)$1	223	48	55	13.4626
yyyyyyy	chr1:46782153-46782408(+)$1	255	60	67	13.6119
bb%%%%%	chr16:2258663-2258914(+)$1	251	8	15	13.1641
cc:DDDD	chr7:5567687-5567912(-)$1	225	199	206	13.2388
nnnbb]c	chr3:58154079-58154333(+)$1	254	12	19	12.9402
=====!!	chr1:178995056-178995325(+)$1	269	91	98	13.7611
ddppppp	chr16:2257092-2257318(+)$1	226	9	16	13.3880
JJBBKKG	chr19:56186564-56186856(+)$1	292	54	61	13.7611
ff"""dd	chr3:52027612-52027866(-)$1	254	142	149	17.1940
::dddd!	chr19:1220496-1220817(+)$1	321	40	47	13.7611
:::::DD	chr11:71146461-71146724(-)$1	263	196	203	13.0149
""affff	chr1:12035006-12035302(+)$1	296	163	170	17.1940
cccffff	chr6:42988755-42989015(+)$1	260	66	73	13.7611
^^^^^^^	chrX:153590343-153590562(-)$1	219	62	69	13.1641
b333eee	chrX:153590708-153590952(-)$1	244	49	56	13.5373
???CCC?	chr1:22150710-22150932(-)$1	222	181	188	17.1940
d[bbooo	chr12:124809629-124809872(-)$1	243	10	17	13.3880
_CCC}AD	chr5:154196636-154196876(+)$1	240	174	181	13.0149
55555ff	chr7:5567659-5567887(-)$1	228	174	181	13.2388
::::::J	chr14:105886163-105886483(+)$1	320	282	289	17.1940
:EEEEEK	chr12:49663515-49663787(+)$1	272	77	84	13.6119
=======	chr17:42397487-42397736(-)$1	249	111	118	13.0895
eee####	chr17:75494732-75495034(+)$1	302	118	125	17.1940
$$$$$bb	chr17:79477924-79478193(-)$1	269	162	169	13.2388
D::GGGG	chr19:47113322-47113567(+)$1	245	66	73	17.1940
JJJJJ::	chrX:153577749-153577967(-)$1	218	12	19	17.1940
DD:::::	chr8:101733575-101733819(-)$1	244	22	29	13.7611
mccc::D	chr19:3061143-3061356(-)$1	213	87	94	13.6119
ccbb[cc	chr16:70415408-70415670(-)$1	262	194	201	13.5373
qqqqqqq	chr19:39220323-39220551(+)$1	228	70	77	12.9402
fffoooo	chr16:2222365-2222587(+)$1	222	17	24	13.7611
~~~~CCC	chrX:47444233-47444482(+)$1	249	192	199	13.5373
&&&&&dd	chr10:75506504-75506800(+)$1	296	131	138	13.7611
ffffff:	chr17:2614801-2615050(-)$1	249	88	95	12.9402
fff]eee	chr11:75283335-75283590(+)$1	255	189	196	13.7611
zzzzzzz	chr1:228681799-228682068(+)$1	269	7	14	13.0895
eeeeooo	chr3:53260671-53260881(-)$1	210	81	88	12.9402
888dddd	chr16:89627538-89627742(+)$1	204	87	94	13.0895
IIIIIII	chr19:10942044-10942322(+)$1	278	125	132	13.7611
CCHHHHH	chr19:10942300-10942587(+)$1	287	187	194	12.9402
vvvvvvv	chr12:6635354-6635632(+)$1	278	118	125	13.4626
:::::::	chr5:10307693-10307982(-)$1	289	58	65	13.0895
lbb22dd	chr8:37917492-37917791(+)$1	299	20	27	13.0895
qdddd55	chr19:2754911-2755199(-)$1	288	124	131	13.7611
^^^^^^^	chr3:47467523-47467757(-)$1	234	76	83	17.1940
DDD::::	chr7:150069436-150069672(+)$1	236	2	9	13.4626
::eeeee	chr20:57484475-57484726(+)$1	251	91	98	17.1940
bba!!dd	chr10:5951033-5951354(+)$1	321	158	165	13.7611

#DB
)))))))	chr12:49522438-49522713(-)$1	1	180	187	12.9402
..(((((	chr3:48638737-48639000(-)$1	1	43	50	17.1940
.....))	chr6:30692043-30692282(+)$1	1	139	146	13.6119
)))))).	chr1:27633034-27633287(+)$1	1	42	49	13.7611
.......	chr2:242168568-242168811(-)$1	1	202	209	13.0895
(((.((.	chr12:124970897-124971172(-)$1	1	4	11	13.5373
(((.(((	chrX:153588344-153588551(-)$1	1	117	124	13.7611
)).....	chr17:41167357-41167633(-)$1	1	211	218	17.1940
(.((((.	chr3:127790002-127790282(+)$1	1	231	238	13.7611
)))).))	chr11:65820046-65820281(+)$1	1	202	209	13.6119
..(((((	chrX:153590587-153590799(-)$1	1	104	111	13.1641
(((((((	chr8:124220016-124220285(+)$1	1	78	85	17.1940
((.((((	chrX:153585729-153585981(-)$1	1	145	152	13.1641
)..))))	chr2:98272483-98272779(-)$1	1	256	263	17.1940
))).)))	chr5:154195530-154195770(+)$1	1	110	117	17.1940
))))...	chr17:79477994-79478226(-)$1	1	195	202	13.2388
......)	chr8:144694852-144695147(-)$1	1	123	130	13.2388
)))..))	chr1:43148049-43148266(+)$1	1	99	106	17.1940
...))))	chr3:53275119-53275362(-)$1	1	63	70	17.1940
)(((...	chr12:53856229-53856452(+)$1	1	48	55	13.4626
.......	chr1:46782153-46782408(+)$1	1	60	67	13.6119
((.....	chr16:2258663-2258914(+)$1	1	8	15	13.1641
)).))))	chr7:5567687-5567912(-)$1	1	199	206	13.2388
...)).)	chr3:58154079-58154333(+)$1	1	12	19	12.9402
(((((..	chr1:178995056-178995325(+)$1	1	91	98	13.7611
((.....	chr16:2257092-2257318(+)$1	1	9	16	13.3880
((((..(	chr19:56186564-56186856(+)$1	1	54	61	13.7611
((...((	chr3:52027612-52027866(-)$1	1	142	149	17.1940
..((((.	chr19:1220496-1220817(+)$1	1	40	47	13.7611
.....))	chr11:71146461-71146724(-)$1	1	196	203	13.0149
..(((((	chr1:12035006-12035302(+)$1	1	163	170	17.1940
)))))))	chr6:42988755-42989015(+)$1	1	66	73	13.7611
.......	chrX:153590343-153590562(-)$1	1	62	69	13.1641
)...)))	chrX:153590708-153590952(-)$1	1	49	56	13.5373
...))).	chr1:22150710-22150932(-)$1	1	181	188	17.1940
(.((...	chr12:124809629-124809872(-)$1	1	10	17	13.3880
.))).))	chr5:154196636-154196876(+)$1	1	174	181	13.0149
.....))	chr7:5567659-5567887(-)$1	1	174	181	13.2388
......)	chr14:105886163-105886483(+)$1	1	282	289	17.1940
.(((((.	chr12:49663515-49663787(+)$1	1	77	84	13.6119
)))))))	chr17:42397487-42397736(-)$1	1	111	118	13.0895
(((....	chr17:75494732-75495034(+)$1	1	118	125	17.1940
.....((	chr17:79477924-79478193(-)$1	1	162	169	13.2388
(..((((	chr19:47113322-47113567(+)$1	1	66	73	17.1940
(((((..	chrX:153577749-153577967(-)$1	1	12	19	17.1940
((.....	chr8:101733575-101733819(-)$1	1	22	29	13.7611
.)))..)	chr19:3061143-3061356(-)$1	1	87	94	13.6119
((((.((	chr16:70415408-70415670(-)$1	1	194	201	13.5373
.......	chr19:39220323-39220551(+)$1	1	70	77	12.9402
(((....	chr16:2222365-2222587(+)$1	1	17	24	13.7611
....)))	chrX:47444233-47444482(+)$1	1	192	199	13.5373
.....((	chr10:75506504-75506800(+)$1	1	131	138	13.7611
)))))).	chr17:2614801-2615050(-)$1	1	88	95	12.9402
))).)))	chr11:75283335-75283590(+)$1	1	189	196	13.7611
.......	chr1:228681799-228682068(+)$1	1	7	14	13.0895
((((...	chr3:53260671-53260881(-)$1	1	81	88	12.9402
...))))	chr16:89627538-89627742(+)$1	1	87	94	13.0895
)))))))	chr19:10942044-10942322(+)$1	1	125	132	13.7611
)))))))	chr19:10942300-10942587(+)$1	1	187	194	12.9402
.......	chr12:6635354-6635632(+)$1	1	118	125	13.4626
.......	chr5:10307693-10307982(-)$1	1	58	65	13.0895
.))..))	chr8:37917492-37917791(+)$1	1	20	27	13.0895
.))))..	chr19:2754911-2755199(-)$1	1	124	131	13.7611
.......	chr3:47467523-47467757(-)$1	1	76	83	17.1940
(((....	chr7:150069436-150069672(+)$1	1	2	9	13.4626
..(((((	chr20:57484475-57484726(+)$1	1	91	98	17.1940
(((..((	chr10:5951033-5951354(+)$1	1	158	165	13.7611

#PSSM
C : 0.83	G : 0.05	U : 0.04	c : 0.02	A : 0.02	
C : 0.83	A : 0.07	U : 0.04	c : 0.02	G : 0.01	
C : 0.88	U : 0.07	c : 0.04	
C : 0.95	c : 0.04	
A : 0.76	U : 0.08	G : 0.05	C : 0.04	a : 0.02	u : 0.01	
C : 0.74	G : 0.10	U : 0.07	c : 0.04	A : 0.02	
C : 0.95	c : 0.04	

#score	958.194029850747
#seq	67
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_transcript_m1_run1.nuc.txt

#NT
ggcaggagg	chr11:638841-639096(+)$1	255	22	31	18.4130
GGGCGGAGG	chr5:142782920-142783230(-)$1	310	239	248	18.8478
gggaggcgg	chr7:65338179-65338425(+)$1	246	151	160	19.2826
gggaggggg	chr2:54197731-54197981(-)$1	250	29	38	20.2608
GGGUGGAGG	chr8:74884210-74884507(-)$1	297	235	244	18.8478
GGGAAGAGG	chr9:136131870-136132142(-)$1	272	219	228	18.0869
GGGAGGAGG	chr7:148395940-148396195(+)$1	255	14	23	22.5434
AGGAGGAGG	chr2:28974701-28974936(+)$1	235	13	22	18.4130
UGGAGGAGG	chr17:46127869-46128162(+)$1	293	127	136	18.3043
GGGAGGGGG	chr2:61765037-61765289(-)$1	252	38	47	20.2608
gggaggggg	chr17:79281016-79281285(-)$1	269	30	39	20.2608
GGGUGGAGG	chr22:50037362-50037678(-)$1	316	22	31	18.8478
GGGAGGGGG	chr2:62932862-62933155(+)$1	293	41	50	20.2608
gggaggagg	chr15:38776585-38776869(+)$1	284	88	97	22.5434
GUGAGGAGG	chr21:46644504-46644800(+)$1	296	13	22	17.9782
GGGAAGAGG	chr6:167357781-167358051(-)$1	270	96	105	18.0869
GGGAGGAGG	chr9:139426178-139426447(-)$1	269	223	232	22.5434
ggcaggagg	chr22:50013859-50014165(-)$1	306	295	304	18.4130
gggaggagc	chr9:140323151-140323424(+)$1	273	102	111	17.9782
gggcggggg	chr19:2270856-2271075(+)$1	219	37	46	16.5652
ggggggagg	chr10:111986983-111987228(+)$1	245	15	24	18.8478
GGGAGGUGG	chr7:101563030-101563294(+)$1	264	79	88	19.1739
ggguggggg	chr12:133295117-133295370(+)$1	253	4	13	16.5652
ggggggggg	chr2:131967822-131968070(+)$1	248	85	94	16.5652
gggaggagg	chr11:65739070-65739356(+)$1	286	108	117	22.5434
GGGAGGAGG	chrX:149108508-149108757(+)$1	249	157	166	22.5434
AGGAGGAGG	chr19:47634055-47634387(+)$1	332	142	151	18.4130
GGGAGGAGC	chr14:77924354-77924698(+)$1	344	8	17	17.9782
gggaggaug	chr2:97559938-97560169(-)$1	231	52	61	17.7608
GGGAGGAGG	chrX:70586272-70586576(+)$1	304	187	196	22.5434
GGAAGGAGG	chr16:89041596-89041859(-)$1	263	120	129	18.3043
gggaggagg	chr1:112162417-112162661(+)$1	244	76	85	22.5434
uggaggagg	chr1:243644452-243644708(+)$1	256	86	95	18.3043
GUgaggagg	chr19:18652415-18652748(-)$1	333	71	80	17.9782
GGGACGAGG	chr12:132315115-132315361(+)$1	246	7	16	17.9782
GGGAGGAGG	chr16:89009747-89009989(-)$1	242	82	91	22.5434
GGGAGGGGG	chr3:138553468-138553740(-)$1	272	52	61	20.2608
gggaggagg	chr17:77812512-77812787(-)$1	275	98	107	22.5434
gggaggcgg	chr19:3062263-3062521(-)$1	258	76	85	19.2826
AGGAGGAGG	chr16:75600647-75600906(+)$1	259	26	35	18.4130
GGGGGGAGG	chr19:13261665-13261993(+)$1	328	34	43	18.8478
GGGCGGGGG	chr19:18548133-18548393(-)$1	260	36	45	16.5652
GGAAGGAGG	chr19:55607937-55608227(-)$1	290	138	147	18.3043
GGGAGGGGG	chr1:1180810-1181106(-)$1	296	157	166	20.2608
ggcaggagg	chr1:110527363-110527637(+)$1	274	197	206	18.4130

#otherMatches

#Struct PSSM
CCCiiiiii	chr19:1249810-1250086(+)$1	276	3	12	20.2608
e]a22a]cc	chr11:638841-639096(+)$1	255	22	31	18.4130
GGGG}CCCe	chr5:142782920-142783230(-)$1	310	239	248	18.8478
eeeee[bb[	chr7:65338179-65338425(+)$1	246	151	160	19.2826
KKBB:ccc[	chr2:54197731-54197981(-)$1	250	29	38	20.2608
c[a[ccc!!	chr8:74884210-74884507(-)$1	297	235	244	18.8478
ddd4444dd	chr9:136131870-136132142(-)$1	272	219	228	18.0869
CCC::::dd	chr7:148395940-148396195(+)$1	255	14	23	22.5434
bb::EEEEE	chr2:28974701-28974936(+)$1	235	13	22	18.4130
eeeee"""e	chr17:46127869-46128162(+)$1	293	127	136	18.3043
bb22a]a]c	chr2:61765037-61765289(-)$1	252	38	47	20.2608
EE{APPPPP	chr17:79281016-79281285(-)$1	269	30	39	20.2608
NNNNA{DDD	chr22:50037362-50037678(-)$1	316	22	31	18.8478
[ccc[bb[b	chr2:62932862-62933155(+)$1	293	41	50	20.2608
:::::::::	chr15:38776585-38776869(+)$1	284	88	97	22.5434
DDKKJJJJJ	chr21:46644504-46644800(+)$1	296	13	22	17.9782
FFKKBB::E	chr6:167357781-167358051(-)$1	270	96	105	18.0869
]a]ccc777	chr9:139426178-139426447(-)$1	269	223	232	22.5434
EEE::::::	chr22:50013859-50014165(-)$1	306	295	304	18.4130
cc%%%%%%b	chr9:140323151-140323424(+)$1	273	102	111	17.9782
mmbb:hhhh	chr19:2270856-2271075(+)$1	219	37	46	16.5652
::::::::a	chr10:111986983-111987228(+)$1	245	15	24	18.8478
bbppppppp	chr7:101563030-101563294(+)$1	264	79	88	19.1739
:FFFFFF{A	chr12:133295117-133295370(+)$1	253	4	13	16.5652
d[ccc[bbc	chr2:131967822-131968070(+)$1	248	85	94	16.5652
nnnnfffff	chr11:65739070-65739356(+)$1	286	108	117	22.5434
[a[bb$$$$	chrX:149108508-149108757(+)$1	249	157	166	22.5434
"a!!bb!!d	chr19:47634055-47634387(+)$1	332	142	151	18.4130
bboooooob	chr14:77924354-77924698(+)$1	344	8	17	17.9782
::bb[a[a[	chr2:97559938-97560169(-)$1	231	52	61	17.7608
dddd[bb""	chrX:70586272-70586576(+)$1	304	187	196	22.5434
eee:::ddd	chr16:89041596-89041859(-)$1	263	120	129	18.3043
bb]bb]bb2	chr1:112162417-112162661(+)$1	244	76	85	22.5434
dd22bb:bb	chr1:243644452-243644708(+)$1	256	86	95	18.3043
C{CCCDDDD	chr19:18652415-18652748(-)$1	333	71	80	17.9782
BBKKA::::	chr12:132315115-132315361(+)$1	246	7	16	17.9782
EE}GGGGGG	chr16:89009747-89009989(-)$1	242	82	91	22.5434
d4444a333	chr3:138553468-138553740(-)$1	272	52	61	20.2608
ccc####bb	chr17:77812512-77812787(-)$1	275	98	107	22.5434
ooooobb:C	chr19:3062263-3062521(-)$1	258	76	85	19.2826
DDD{ADDDD	chr16:75600647-75600906(+)$1	259	26	35	18.4130
:ggggggg[	chr19:13261665-13261993(+)$1	328	34	43	18.8478
ggggggg!!	chr19:18548133-18548393(-)$1	260	36	45	16.5652
:::CCC{FF	chr19:55607937-55608227(-)$1	290	138	147	18.3043
2a22fffff	chr1:1180810-1181106(-)$1	296	157	166	20.2608
ddd22dddd	chr1:110527363-110527637(+)$1	274	197	206	18.4130

#DB
(((((((((	chr19:1249810-1250086(+)$1	1	3	12	20.2608
).)..).))	chr11:638841-639096(+)$1	1	22	31	18.4130
)))).)))(	chr5:142782920-142783230(-)$1	1	239	248	18.8478
(((((.((.	chr7:65338179-65338425(+)$1	1	151	160	19.2826
..((.(((.	chr2:54197731-54197981(-)$1	1	29	38	20.2608
(.(.(((..	chr8:74884210-74884507(-)$1	1	235	244	18.8478
)))....))	chr9:136131870-136132142(-)$1	1	219	228	18.0869
(((....((	chr7:148395940-148396195(+)$1	1	14	23	22.5434
))..(((((	chr2:28974701-28974936(+)$1	1	13	22	18.4130
(((((...(	chr17:46127869-46128162(+)$1	1	127	136	18.3043
))..).).)	chr2:61765037-61765289(-)$1	1	38	47	20.2608
((.(.....	chr17:79281016-79281285(-)$1	1	30	39	20.2608
....(.(((	chr22:50037362-50037678(-)$1	1	22	31	18.8478
.(((.((.(	chr2:62932862-62933155(+)$1	1	41	50	20.2608
.........	chr15:38776585-38776869(+)$1	1	88	97	22.5434
((..(((((	chr21:46644504-46644800(+)$1	1	13	22	17.9782
((..((..(	chr6:167357781-167358051(-)$1	1	96	105	18.0869
.).)))...	chr9:139426178-139426447(-)$1	1	223	232	22.5434
)))......	chr22:50013859-50014165(-)$1	1	295	304	18.4130
((......(	chr9:140323151-140323424(+)$1	1	102	111	17.9782
..)).((((	chr19:2270856-2271075(+)$1	1	37	46	16.5652
........(	chr10:111986983-111987228(+)$1	1	15	24	18.8478
((.......	chr7:101563030-101563294(+)$1	1	79	88	19.1739
.((((((.(	chr12:133295117-133295370(+)$1	1	4	13	16.5652
(.(((.(((	chr2:131967822-131968070(+)$1	1	85	94	16.5652
....)))))	chr11:65739070-65739356(+)$1	1	108	117	22.5434
.(.((....	chrX:149108508-149108757(+)$1	1	157	166	22.5434
.(..((..(	chr19:47634055-47634387(+)$1	1	142	151	18.4130
((......)	chr14:77924354-77924698(+)$1	1	8	17	17.9782
..((.(.(.	chr2:97559938-97560169(-)$1	1	52	61	17.7608
((((.((..	chrX:70586272-70586576(+)$1	1	187	196	22.5434
)))...(((	chr16:89041596-89041859(-)$1	1	120	129	18.3043
)).)).)).	chr1:112162417-112162661(+)$1	1	76	85	22.5434
))..)).((	chr1:243644452-243644708(+)$1	1	86	95	18.3043
(.(((((((	chr19:18652415-18652748(-)$1	1	71	80	17.9782
((..(....	chr12:132315115-132315361(+)$1	1	7	16	17.9782
)).))))))	chr16:89009747-89009989(-)$1	1	82	91	22.5434
)....)...	chr3:138553468-138553740(-)$1	1	52	61	20.2608
(((....((	chr17:77812512-77812787(-)$1	1	98	107	22.5434
.....)).)	chr19:3062263-3062521(-)$1	1	76	85	19.2826
(((.(((((	chr16:75600647-75600906(+)$1	1	26	35	18.4130
.(((((((.	chr19:13261665-13261993(+)$1	1	34	43	18.8478
(((((((..	chr19:18548133-18548393(-)$1	1	36	45	16.5652
...(((.((	chr19:55607937-55608227(-)$1	1	138	147	18.3043
.)..)))))	chr1:1180810-1181106(-)$1	1	157	166	20.2608
)))..))))	chr1:110527363-110527637(+)$1	1	197	206	18.4130

#PSSM
G : 0.52	g : 0.36	A : 0.06	U : 0.02	u : 0.02	
G : 0.56	g : 0.39	U : 0.04	
G : 0.54	g : 0.34	c : 0.06	A : 0.04	
A : 0.47	a : 0.32	C : 0.04	U : 0.04	g : 0.04	c : 0.02	u : 0.02	G : 0.02	
G : 0.49	g : 0.43	A : 0.04	C : 0.02	
G : 0.56	g : 0.43	
A : 0.43	a : 0.26	g : 0.13	G : 0.10	c : 0.04	U : 0.02	
G : 0.56	g : 0.41	u : 0.02	
G : 0.54	g : 0.41	c : 0.02	C : 0.02	

#score	890.4782608695647
#seq	46
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_UTR_m2_run2.nuc.txt

#NT
UGAAAAU	chr1:203769764-203769994(+)$1	230	30	37	15.2857
agaaaaa	chr3:152057867-152058133(+)$1	266	235	242	15.2857
ggaaaau	chr8:11665466-11665712(+)$1	246	18	25	14.9285
AGAAAau	chr8:91017386-91017656(+)$1	270	105	112	17.4285
AGAAAAA	chr3:42680266-42680503(+)$1	237	51	58	15.2857
AGAAAAA	chr4:761836-762097(-)$1	261	68	75	15.2857
AGAAAAU	chrX:135955405-135955687(-)$1	282	160	167	17.4285
UGAAAAU	chr6:64421398-64421666(+)$1	268	43	50	15.2857
AGAAAAG	chr3:160150795-160151038(+)$1	243	32	39	14.9285
AGAAAAU	chr6:83877574-83877875(-)$1	301	11	18	17.4285
AGAAAAG	chr1:46073433-46073660(+)$1	227	7	14	14.9285
UGAAAAU	chrX:135956798-135957053(-)$1	255	65	72	15.2857
AGAAAAU	chrX:135954808-135955056(-)$1	248	127	134	17.4285

#otherMatches

#Struct PSSM
dddd:::	chr4:761607-761876(-)$1	269	136	143	14.9285
BBMMMMD	chr1:203769764-203769994(+)$1	230	30	37	15.2857
:::::::	chr3:152057867-152058133(+)$1	266	235	242	15.2857
:::::::	chr8:11665466-11665712(+)$1	246	18	25	14.9285
:::::::	chr8:91017386-91017656(+)$1	270	105	112	17.4285
wwwwwww	chr3:42680266-42680503(+)$1	237	51	58	15.2857
:::::::	chr4:761836-762097(-)$1	261	68	75	15.2857
ee&&&&&	chrX:135955405-135955687(-)$1	282	160	167	17.4285
:ffffff	chr6:64421398-64421666(+)$1	268	43	50	15.2857
!dddd[f	chr3:160150795-160151038(+)$1	243	32	39	14.9285
FFF::::	chr6:83877574-83877875(-)$1	301	11	18	17.4285
:::::::	chr1:46073433-46073660(+)$1	227	7	14	14.9285
]iiiiii	chrX:135956798-135957053(-)$1	255	65	72	15.2857
gg55555	chrX:135954808-135955056(-)$1	248	127	134	17.4285

#DB
))))...	chr4:761607-761876(-)$1	1	136	143	14.9285
((....(	chr1:203769764-203769994(+)$1	1	30	37	15.2857
.......	chr3:152057867-152058133(+)$1	1	235	242	15.2857
.......	chr8:11665466-11665712(+)$1	1	18	25	14.9285
.......	chr8:91017386-91017656(+)$1	1	105	112	17.4285
.......	chr3:42680266-42680503(+)$1	1	51	58	15.2857
.......	chr4:761836-762097(-)$1	1	68	75	15.2857
((.....	chrX:135955405-135955687(-)$1	1	160	167	17.4285
.((((((	chr6:64421398-64421666(+)$1	1	43	50	15.2857
.((((.(	chr3:160150795-160151038(+)$1	1	32	39	14.9285
(((....	chr6:83877574-83877875(-)$1	1	11	18	17.4285
.......	chr1:46073433-46073660(+)$1	1	7	14	14.9285
.))))))	chrX:135956798-135957053(-)$1	1	65	72	15.2857
)).....	chrX:135954808-135955056(-)$1	1	127	134	17.4285

#PSSM
A : 0.57	U : 0.21	G : 0.07	a : 0.07	g : 0.07	
G : 0.85	g : 0.14	
A : 0.85	a : 0.14	
A : 0.85	a : 0.14	
A : 0.85	a : 0.14	
A : 0.78	a : 0.21	
U : 0.49	u : 0.14	A : 0.14	G : 0.14	a : 0.07	

#score	221.14285714285705
#seq	14
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_transcript_m3_run2.nuc.txt

#NT
GGGUGAGUGUG	chr1:109642767-109642975(+)$1	208	122	133	20.4218
guguguguguc	chr7:47391784-47392083(-)$1	299	284	295	22.3750
gugugggugug	chr20:62901409-62901706(+)$1	297	115	126	23.1562
CUGUGUGAGUG	chr21:44268260-44268520(-)$1	260	19	30	20.5000
gugugugcgug	chr7:158158147-158158410(-)$1	263	1	12	22.6093
AUGUGUUUGUG	chr3:58117437-58117707(+)$1	270	84	95	19.5625
CUGUGUGAGUG	chr21:44268358-44268609(-)$1	251	7	18	20.5000
guguguguguA	chr11:65211665-65211899(+)$1	234	118	129	22.8437
CUGCGUGUGUG	chrX:152909083-152909359(+)$1	276	78	89	19.8750
AUGUGUGCGUG	chr5:175308462-175308765(+)$1	303	145	156	20.4218
gugugugugug	chr20:43033617-43033888(+)$1	271	5	16	26.5937
aggugugugug	chr17:79964204-79964467(+)$1	263	16	27	21.5937
cugugugugug	chr16:75269810-75270079(-)$1	269	58	69	24.6406
uggugugugug	chr17:15368351-15368657(-)$1	306	70	81	21.3593
GGGUGAGUGUG	chr1:109642812-109643021(+)$1	209	77	88	20.4218
UGGUGUGUGUG	chr12:133112989-133113277(+)$1	288	13	24	21.3593
gugugugugug	chr20:43033564-43033817(+)$1	253	58	69	26.5937
cugugugucug	chr7:158224065-158224322(-)$1	257	112	123	19.7968
cugugugugug	chr21:44268968-44269202(-)$1	234	20	31	24.6406
GUGUGUGUGUG	chr17:74273646-74273961(-)$1	315	4	15	26.5937
gcgugugcgug	chr17:79964135-79964363(+)$1	228	1	12	19.4062
gugugugugug	chr8:38626473-38626703(+)$1	230	89	100	26.5937
Uugugugugug	chr9:136719084-136719331(-)$1	247	10	21	24.1718
GGGUGAGUGUG	chr1:109642832-109643036(+)$1	204	57	68	20.4218
gugugcgugug	chr3:48467241-48467539(-)$1	298	96	107	22.7656
CUGUCUGUGUG	chr1:44058765-44059033(+)$1	268	94	105	19.7968
augagugugug	chr17:70549424-70549689(-)$1	265	29	40	19.6406
GUGUGUGUGUU	chr16:81712642-81712899(+)$1	257	158	169	22.3750
gcgugugcgug	chr17:79963810-79964066(+)$1	256	126	137	19.4062
GGGUGAGUGUG	chr1:109642801-109643012(+)$1	211	88	99	20.4218
GUGUGGGUGUG	chr7:158124817-158125063(-)$1	246	57	68	23.1562
GAGUGUGGGUG	chr8:123899176-123899537(+)$1	361	267	278	19.1718
GUGUGUGUGUA	chr19:47732206-47732451(-)$1	245	189	200	22.8437
gugugugugug	chr11:70504158-70504425(-)$1	267	0	11	26.5937
GGGUGAGUGUG	chr1:109642784-109642994(+)$1	210	105	116	20.4218
gugugugugug	chr17:79963911-79964122(+)$1	211	144	155	26.5937
GUGUGGGUGUG	chr7:158127211-158127441(-)$1	230	19	30	23.1562
Cugugugugug	chr16:89555492-89555771(-)$1	279	94	105	24.6406
gugugugugug	chr16:50657549-50657829(+)$1	280	217	228	26.5937
GUGUGGGUGUG	chr7:158125060-158125294(-)$1	234	104	115	23.1562
gugugugugua	chr17:7077792-7078045(-)$1	253	63	74	22.8437
GUGUGGGUGUG	chr7:158134656-158134902(-)$1	246	46	57	23.1562
gugugugugua	chr2:241900832-241901099(-)$1	267	10	21	22.8437
gugugugugug	chr17:79964070-79964282(+)$1	212	106	117	26.5937
cugugugugug	chr19:18881637-18881927(+)$1	290	106	117	24.6406
augugugugug	chr16:22435025-22435331(-)$1	306	75	86	24.4062
gugugagugug	chr9:136780914-136781196(-)$1	282	24	35	23.2343
cugugugugug	chr1:1158372-1158635(-)$1	263	213	224	24.6406
augugugugug	chr20:43033159-43033487(+)$1	328	0	11	24.4062
UUGUGUGGGUG	chr19:16479248-16479527(-)$1	279	145	156	20.1093
gcgugugugug	chr6:349144-349423(+)$1	279	62	73	23.3906
guguguguguA	chr11:65211717-65211942(+)$1	225	66	77	22.8437
cugugugugug	chr21:46285981-46286235(-)$1	254	11	22	24.6406
GAGUGUGUGUG	chr3:37903851-37904123(+)$1	272	135	146	23.2343
augugugugua	chr1:987889-988146(+)$1	257	35	46	20.6562
gugugugugua	chr17:79964082-79964335(+)$1	253	140	151	22.8437
acgugugugug	chr7:158322524-158322781(-)$1	257	241	252	21.2031
CUGUGUGGGUG	chr5:176517135-176517373(+)$1	238	112	123	20.5781
GGGUGAGUGUG	chr1:109642846-109643053(+)$1	207	43	54	20.4218
gugugugugug	chr17:70550221-70550488(-)$1	267	46	57	26.5937
ACGUGUGUGUG	chr16:31197730-31197958(+)$1	228	208	219	21.2031
uggugugugug	chr4:23796920-23797185(-)$1	265	69	80	21.3593
GUGUGGGUGUG	chr7:158127185-158127411(-)$1	226	77	88	23.1562

#otherMatches

#Struct PSSM
44hhhhhhhh2	chr17:206312-206568(-)$1	256	100	111	20.8125
+++++++++++	chr1:109642767-109642975(+)$1	208	122	133	20.4218
555ffffff]b	chr7:47391784-47392083(-)$1	299	284	295	22.3750
CZZZBB}A}EE	chr20:62901409-62901706(+)$1	297	115	126	23.1562
GGGGGGG{A{B	chr21:44268260-44268520(-)$1	260	19	30	20.5000
===========	chr7:158158147-158158410(-)$1	263	1	12	22.6093
ggggqqqqqqq	chr3:58117437-58117707(+)$1	270	84	95	19.5625
A::A{EEEEE{	chr21:44268358-44268609(-)$1	251	7	18	20.5000
:::::::::::	chr11:65211665-65211899(+)$1	234	118	129	22.8437
====]eeeee4	chrX:152909083-152909359(+)$1	276	78	89	19.8750
22bb]abb[gg	chr5:175308462-175308765(+)$1	303	145	156	20.4218
B:::::::ddd	chr20:43033617-43033888(+)$1	271	5	16	26.5937
i"""=======	chr17:79964204-79964467(+)$1	263	16	27	21.5937
annnnna]===	chr16:75269810-75270079(-)$1	269	58	69	24.6406
:::::::::::	chr17:15368351-15368657(-)$1	306	70	81	21.3593
HHH:::ddddo	chr1:109642812-109643021(+)$1	209	77	88	20.4218
eeeeooooooe	chr12:133112989-133113277(+)$1	288	13	24	21.3593
::::::::ddd	chr20:43033564-43033817(+)$1	253	58	69	26.5937
eee[bb!!eee	chr7:158224065-158224322(-)$1	257	112	123	19.7968
e"""iiiiiii	chr21:44268968-44269202(-)$1	234	20	31	24.6406
:::::::::::	chr17:74273646-74273961(-)$1	315	4	15	26.5937
ddd"""fffff	chr17:79964135-79964363(+)$1	228	1	12	19.4062
e[bb[annnnn	chr8:38626473-38626703(+)$1	230	89	100	26.5937
===========	chr9:136719084-136719331(-)$1	247	10	21	24.1718
]ccc=======	chr1:109642832-109643036(+)$1	204	57	68	20.4218
b[=========	chr3:48467241-48467539(-)$1	298	96	107	22.7656
EEE{CCC{BB{	chr1:44058765-44059033(+)$1	268	94	105	19.7968
EEEEKKIIIII	chr17:70549424-70549689(-)$1	265	29	40	19.6406
ffffffIIIII	chr16:81712642-81712899(+)$1	257	158	169	22.3750
eeeee]fffff	chr17:79963810-79964066(+)$1	256	126	137	19.4062
+++++++++++	chr1:109642801-109643012(+)$1	211	88	99	20.4218
hh+++++++++	chr7:158124817-158125063(-)$1	246	57	68	23.1562
::bb[ccc[dd	chr8:123899176-123899537(+)$1	361	267	278	19.1718
atttttttttt	chr19:47732206-47732451(-)$1	245	189	200	22.8437
:::::::IIII	chr11:70504158-70504425(-)$1	267	0	11	26.5937
HHH:::ddddo	chr1:109642784-109642994(+)$1	210	105	116	20.4218
ffffqqqqqqq	chr17:79963911-79964122(+)$1	211	144	155	26.5937
''''''a[===	chr7:158127211-158127441(-)$1	230	19	30	23.1562
cc]ccc4444d	chr16:89555492-89555771(-)$1	279	94	105	24.6406
3eeeee]ffff	chr16:50657549-50657829(+)$1	280	217	228	26.5937
g]ccccccooo	chr7:158125060-158125294(-)$1	234	104	115	23.1562
CTTTTTTTTTT	chr17:7077792-7078045(-)$1	253	63	74	22.8437
GTTTTTTTTTT	chr7:158134656-158134902(-)$1	246	46	57	23.1562
ddd"""=====	chr2:241900832-241901099(-)$1	267	10	21	22.8437
EE::::hhhhh	chr17:79964070-79964282(+)$1	212	106	117	26.5937
ff=========	chr19:18881637-18881927(+)$1	290	106	117	24.6406
gggggg=====	chr16:22435025-22435331(-)$1	306	75	86	24.4062
b$$$$$iiiii	chr9:136780914-136781196(-)$1	282	24	35	23.2343
==[bbqqqqqq	chr1:1158372-1158635(-)$1	263	213	224	24.6406
DDDD::::ccc	chr20:43033159-43033487(+)$1	328	0	11	24.4062
4444ddddbb]	chr19:16479248-16479527(-)$1	279	145	156	20.1093
ggg[ddddooo	chr6:349144-349423(+)$1	279	62	73	23.3906
:::::::::::	chr11:65211717-65211942(+)$1	225	66	77	22.8437
BLLLDDDD{FF	chr21:46285981-46286235(-)$1	254	11	22	24.6406
c[=========	chr3:37903851-37904123(+)$1	272	135	146	23.2343
JJ=========	chr1:987889-988146(+)$1	257	35	46	20.6562
""=========	chr17:79964082-79964335(+)$1	253	140	151	22.8437
========:::	chr7:158322524-158322781(-)$1	257	241	252	21.2031
eeee22ggggg	chr5:176517135-176517373(+)$1	238	112	123	20.5781
HHH:::ddddo	chr1:109642846-109643053(+)$1	207	43	54	20.4218
ccc4444a]==	chr17:70550221-70550488(-)$1	267	46	57	26.5937
eemmmmeeeee	chr16:31197730-31197958(+)$1	228	208	219	21.2031
JJ{EEEEE{A{	chr4:23796920-23797185(-)$1	265	69	80	21.3593
nnna]a]eeee	chr7:158127185-158127411(-)$1	226	77	88	23.1562

#DB
..)))))))).	chr17:206312-206568(-)$1	1	100	111	20.8125
...........	chr1:109642767-109642975(+)$1	1	122	133	20.4218
...)))))).)	chr7:47391784-47392083(-)$1	1	284	295	22.3750
)...)).).))	chr20:62901409-62901706(+)$1	1	115	126	23.1562
(((((((.(.(	chr21:44268260-44268520(-)$1	1	19	30	20.5000
(((((((((((	chr7:158158147-158158410(-)$1	1	1	12	22.6093
((((.......	chr3:58117437-58117707(+)$1	1	84	95	19.5625
(..(.(((((.	chr21:44268358-44268609(-)$1	1	7	18	20.5000
...........	chr11:65211665-65211899(+)$1	1	118	129	22.8437
)))).))))).	chrX:152909083-152909359(+)$1	1	78	89	19.8750
..)).)((.((	chr5:175308462-175308765(+)$1	1	145	156	20.4218
(.......(((	chr20:43033617-43033888(+)$1	1	5	16	26.5937
(...(((((((	chr17:79964204-79964467(+)$1	1	16	27	21.5937
(.....).)))	chr16:75269810-75270079(-)$1	1	58	69	24.6406
...........	chr17:15368351-15368657(-)$1	1	70	81	21.3593
(((...((((.	chr1:109642812-109643021(+)$1	1	77	88	20.4218
((((......)	chr12:133112989-133113277(+)$1	1	13	24	21.3593
........(((	chr20:43033564-43033817(+)$1	1	58	69	26.5937
(((.((..(((	chr7:158224065-158224322(-)$1	1	112	123	19.7968
(...(((((((	chr21:44268968-44269202(-)$1	1	20	31	24.6406
...........	chr17:74273646-74273961(-)$1	1	4	15	26.5937
(((...(((((	chr17:79964135-79964363(+)$1	1	1	12	19.4062
(.((.(.....	chr8:38626473-38626703(+)$1	1	89	100	26.5937
(((((((((((	chr9:136719084-136719331(-)$1	1	10	21	24.1718
.)))(((((((	chr1:109642832-109643036(+)$1	1	57	68	20.4218
(.(((((((((	chr3:48467241-48467539(-)$1	1	96	107	22.7656
(((.(((.((.	chr1:44058765-44059033(+)$1	1	94	105	19.7968
((((..(((((	chr17:70549424-70549689(-)$1	1	29	40	19.6406
)))))))))))	chr16:81712642-81712899(+)$1	1	158	169	22.3750
))))).)))))	chr17:79963810-79964066(+)$1	1	126	137	19.4062
...........	chr1:109642801-109643012(+)$1	1	88	99	20.4218
((.........	chr7:158124817-158125063(-)$1	1	57	68	23.1562
..((.(((.((	chr8:123899176-123899537(+)$1	1	267	278	19.1718
(..........	chr19:47732206-47732451(-)$1	1	189	200	22.8437
.......((((	chr11:70504158-70504425(-)$1	1	0	11	26.5937
(((...((((.	chr1:109642784-109642994(+)$1	1	105	116	20.4218
((((.......	chr17:79963911-79964122(+)$1	1	144	155	26.5937
......(.(((	chr7:158127211-158127441(-)$1	1	19	30	23.1562
)).)))....)	chr16:89555492-89555771(-)$1	1	94	105	24.6406
.))))).))))	chr16:50657549-50657829(+)$1	1	217	228	26.5937
).)))(((...	chr7:158125060-158125294(-)$1	1	104	115	23.1562
(..........	chr17:7077792-7078045(-)$1	1	63	74	22.8437
(..........	chr7:158134656-158134902(-)$1	1	46	57	23.1562
(((...(((((	chr2:241900832-241901099(-)$1	1	10	21	22.8437
((....(((((	chr17:79964070-79964282(+)$1	1	106	117	26.5937
))(((((((((	chr19:18881637-18881927(+)$1	1	106	117	24.6406
))))))(((((	chr16:22435025-22435331(-)$1	1	75	86	24.4062
(.....(((((	chr9:136780914-136781196(-)$1	1	24	35	23.2343
((.((......	chr1:1158372-1158635(-)$1	1	213	224	24.6406
((((....(((	chr20:43033159-43033487(+)$1	1	0	11	24.4062
....)))))).	chr19:16479248-16479527(-)$1	1	145	156	20.1093
(((.((((...	chr6:349144-349423(+)$1	1	62	73	23.3906
...........	chr11:65211717-65211942(+)$1	1	66	77	22.8437
(...((((.((	chr21:46285981-46286235(-)$1	1	11	22	24.6406
(.(((((((((	chr3:37903851-37904123(+)$1	1	135	146	23.2343
(((((((((((	chr1:987889-988146(+)$1	1	35	46	20.6562
..(((((((((	chr17:79964082-79964335(+)$1	1	140	151	22.8437
))))))))...	chr7:158322524-158322781(-)$1	1	241	252	21.2031
))))..)))))	chr5:176517135-176517373(+)$1	1	112	123	20.5781
(((...((((.	chr1:109642846-109643053(+)$1	1	43	54	20.4218
)))....).))	chr17:70550221-70550488(-)$1	1	46	57	26.5937
((....)))))	chr16:31197730-31197958(+)$1	1	208	219	21.2031
((.(((((.(.	chr4:23796920-23797185(-)$1	1	69	80	21.3593
...).).))))	chr7:158127185-158127411(-)$1	1	77	88	23.1562

#PSSM
g : 0.32	G : 0.25	C : 0.09	a : 0.09	c : 0.09	U : 0.06	A : 0.04	u : 0.03	
u : 0.46	U : 0.25	G : 0.10	c : 0.06	A : 0.04	g : 0.04	C : 0.01	
g : 0.57	G : 0.42	
u : 0.56	U : 0.40	C : 0.01	a : 0.01	
g : 0.57	G : 0.40	C : 0.01	
u : 0.53	U : 0.25	A : 0.09	G : 0.07	g : 0.01	c : 0.01	a : 0.01	
g : 0.57	G : 0.40	U : 0.01	
u : 0.53	U : 0.32	c : 0.04	G : 0.04	A : 0.03	C : 0.01	
g : 0.56	G : 0.42	c : 0.01	
u : 0.57	U : 0.42	
g : 0.46	G : 0.39	a : 0.06	A : 0.04	c : 0.01	U : 0.01	

#score	1447.0
#seq	64
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_UTR_m3_run1.nuc.txt

#NT
CAG	chr17:79801807-79802069(-)$1	262	23	26	8.9999
cag	chr18:158456-158718(+)$1	262	24	27	8.9999
CAG	chr3:40503329-40503531(+)$1	202	8	11	8.9999
CAG	chr12:57107339-57107567(-)$1	228	124	127	8.9999
CAG	chr4:174253112-174253364(-)$1	252	12	15	8.9999
CAG	chr11:61732417-61732680(-)$1	263	93	96	8.9999
CAG	chr6:27115123-27115398(+)$1	275	96	99	8.9999
CAG	chr11:290480-290726(+)$1	246	56	59	8.9999
CAG	chr8:144921729-144921971(-)$1	242	2	5	8.9999
CAG	chr1:206566800-206567084(+)$1	284	98	101	8.9999
CAG	chr3:184042589-184042863(+)$1	274	6	9	8.9999
CAG	chr17:80017733-80018014(-)$1	281	8	11	8.9999
CAG	chr19:50002676-50002921(+)$1	245	89	92	8.9999
cag	chr12:124017849-124018153(-)$1	304	2	5	8.9999
CAG	chr1:205718994-205719230(-)$1	236	1	4	8.9999
CAG	chr5:149778483-149778734(+)$1	251	29	32	8.9999
CAG	chr15:66791644-66791857(-)$1	213	2	5	8.9999
CAG	chr11:289710-289965(+)$1	255	0	3	8.9999
CAG	chr8:56985627-56985887(-)$1	260	53	56	8.9999
CAG	chr16:56642399-56642645(+)$1	246	13	16	8.9999
CAG	chr19:30503091-30503388(+)$1	297	0	3	8.9999
CAG	chr19:39328939-39329201(-)$1	262	23	26	8.9999
CAG	chr12:76443439-76443651(-)$1	212	8	11	8.9999
cag	chr1:29475021-29475264(-)$1	243	0	3	8.9999
CAG	chr17:1257403-1257661(-)$1	258	31	34	8.9999
CAG	chr18:12310848-12311127(+)$1	279	0	3	8.9999
CAG	chr11:65732778-65733019(+)$1	241	31	34	8.9999
cag	chr19:59069547-59069825(-)$1	278	55	58	8.9999
CAG	chr7:99686812-99687039(+)$1	227	44	47	8.9999
CAG	chr3:185636052-185636309(-)$1	257	2	5	8.9999
CAG	chr12:104325983-104326235(+)$1	252	87	90	8.9999
CAG	chr13:107220068-107220377(-)$1	309	28	31	8.9999
CAG	chr15:60644472-60644776(-)$1	304	154	157	8.9999
cag	chr11:32611001-32611257(+)$1	256	16	19	8.9999
CAG	chr11:760108-760339(+)$1	231	10	13	8.9999
CAG	chr17:74068312-74068574(-)$1	262	17	20	8.9999
CAG	chr1:23664918-23665153(-)$1	235	98	101	8.9999
CAG	chr20:57485636-57485875(+)$1	239	0	3	8.9999
CAG	chr19:49611041-49611334(+)$1	293	7	10	8.9999
CAG	chr19:40329662-40329932(-)$1	270	0	3	8.9999
Cag	chr19:3462897-3463187(+)$1	290	33	36	8.9999
CAG	chr20:57019032-57019321(+)$1	289	18	21	8.9999
CAG	chr1:153963941-153964144(+)$1	203	48	51	8.9999
CAG	chr6:163955915-163956224(+)$1	309	23	26	8.9999
CAG	chr1:150192894-150193164(-)$1	270	185	188	8.9999
CAG	chr1:156713091-156713346(-)$1	255	4	7	8.9999
CAG	chr7:35942692-35942926(+)$1	234	35	38	8.9999
CAG	chr19:54647872-54648100(+)$1	228	124	127	8.9999
cag	chr11:77333594-77333819(-)$1	225	17	20	8.9999
CAG	chr1:156104537-156104815(+)$1	278	7	10	8.9999
CAG	chr11:118886462-118886676(-)$1	214	52	55	8.9999
CAG	chr17:40133856-40134122(-)$1	266	17	20	8.9999
CAG	chr15:69072648-69072895(-)$1	247	27	30	8.9999
CAG	chr8:117862760-117863095(-)$1	335	8	11	8.9999
CAG	chr4:129192379-129192668(-)$1	289	133	136	8.9999
CAG	chr9:139734795-139735093(+)$1	298	62	65	8.9999
CAG	chr19:10270607-10270840(-)$1	233	9	12	8.9999
CAG	chr3:40503511-40503726(+)$1	215	48	51	8.9999
cag	chr8:11666205-11666495(+)$1	290	10	13	8.9999
CAG	chr9:136901249-136901542(-)$1	293	3	6	8.9999
CAG	chr2:132010395-132010661(+)$1	266	92	95	8.9999
CAG	chr9:37588695-37588954(-)$1	259	22	25	8.9999
CAG	chr11:62334325-62334584(-)$1	259	6	9	8.9999
CAG	chr4:83278467-83278697(-)$1	230	97	100	8.9999
CAG	chr16:11931787-11932056(-)$1	269	14	17	8.9999
CAG	chr6:111346532-111346857(+)$1	325	5	8	8.9999
CAG	chr7:99697536-99697816(-)$1	280	97	100	8.9999
CAG	chr6:33243507-33243760(+)$1	253	26	29	8.9999
CAG	chr17:80422090-80422368(+)$1	278	134	137	8.9999
CAG	chr11:18420883-18421154(+)$1	271	11	14	8.9999
CAG	chr2:101622317-101622577(+)$1	260	4	7	8.9999
CAG	chr19:49994885-49995121(+)$1	236	13	16	8.9999
CAG	chr17:40134165-40134520(-)$1	355	24	27	8.9999
CAG	chr10:79799872-79800083(+)$1	211	1	4	8.9999
CAG	chr12:53421816-53422051(+)$1	235	1	4	8.9999
CAG	chr12:108920106-108920359(-)$1	253	31	34	8.9999
CAG	chr19:14199905-14200266(-)$1	361	32	35	8.9999
CAG	chr17:4575246-4575509(-)$1	263	123	126	8.9999
CAG	chr20:57603698-57603998(-)$1	300	5	8	8.9999
CAG	chr19:50002668-50002876(+)$1	208	6	9	8.9999
CAG	chr19:5641545-5641770(+)$1	225	56	59	8.9999
CAG	chr4:1729375-1729638(+)$1	263	17	20	8.9999
CAG	chr5:137521887-137522188(+)$1	301	37	40	8.9999
CAG	chr10:79799863-79800071(+)$1	208	10	13	8.9999
CAG	chr1:153963974-153964243(+)$1	269	15	18	8.9999
CAG	chr5:96107281-96107507(+)$1	226	25	28	8.9999
CAG	chr9:127620141-127620355(-)$1	214	6	9	8.9999
CAG	chr19:19603355-19603622(+)$1	267	31	34	8.9999
CAG	chr12:76449714-76449934(-)$1	220	106	109	8.9999
CAG	chr15:59182390-59182722(-)$1	332	16	19	8.9999
CAG	chr13:28008896-28009177(+)$1	281	42	45	8.9999
CAG	chr19:34941152-34941368(+)$1	216	34	37	8.9999
CAG	chr9:19379387-19379633(-)$1	246	33	36	8.9999
CAG	chr1:27105613-27105897(+)$1	284	25	28	8.9999
CAG	chr12:49521683-49521992(-)$1	309	9	12	8.9999
CAG	chr8:117669353-117669638(-)$1	285	4	7	8.9999
CAG	chr8:56985687-56985931(-)$1	244	38	41	8.9999
CAG	chr11:130011310-130011564(+)$1	254	5	8	8.9999

#otherMatches

#Struct PSSM
{FF	chr4:77951884-77952226(+)$1	342	48	51	8.9999
B{A	chr17:79801807-79802069(-)$1	262	23	26	8.9999
ttt	chr18:158456-158718(+)$1	262	24	27	8.9999
ttt	chr3:40503329-40503531(+)$1	202	8	11	8.9999
!!c	chr12:57107339-57107567(-)$1	228	124	127	8.9999
GGG	chr4:174253112-174253364(-)$1	252	12	15	8.9999
(((	chr11:61732417-61732680(-)$1	263	93	96	8.9999
ooo	chr6:27115123-27115398(+)$1	275	96	99	8.9999
22d	chr11:290480-290726(+)$1	246	56	59	8.9999
::c	chr8:144921729-144921971(-)$1	242	2	5	8.9999
ggg	chr1:206566800-206567084(+)$1	284	98	101	8.9999
CCC	chr3:184042589-184042863(+)$1	274	6	9	8.9999
FFF	chr17:80017733-80018014(-)$1	281	8	11	8.9999
ddd	chr19:50002676-50002921(+)$1	245	89	92	8.9999
HHH	chr12:124017849-124018153(-)$1	304	2	5	8.9999
b!!	chr1:205718994-205719230(-)$1	236	1	4	8.9999
ggn	chr5:149778483-149778734(+)$1	251	29	32	8.9999
JJJ	chr15:66791644-66791857(-)$1	213	2	5	8.9999
:::	chr11:289710-289965(+)$1	255	0	3	8.9999
qdd	chr8:56985627-56985887(-)$1	260	53	56	8.9999
{BB	chr16:56642399-56642645(+)$1	246	13	16	8.9999
:::	chr19:30503091-30503388(+)$1	297	0	3	8.9999
FFF	chr19:39328939-39329201(-)$1	262	23	26	8.9999
ggg	chr12:76443439-76443651(-)$1	212	8	11	8.9999
:::	chr1:29475021-29475264(-)$1	243	0	3	8.9999
lll	chr17:1257403-1257661(-)$1	258	31	34	8.9999
:CC	chr18:12310848-12311127(+)$1	279	0	3	8.9999
gcc	chr11:65732778-65733019(+)$1	241	31	34	8.9999
EEE	chr19:59069547-59069825(-)$1	278	55	58	8.9999
ccc	chr7:99686812-99687039(+)$1	227	44	47	8.9999
HHH	chr3:185636052-185636309(-)$1	257	2	5	8.9999
fff	chr12:104325983-104326235(+)$1	252	87	90	8.9999
ooo	chr13:107220068-107220377(-)$1	309	28	31	8.9999
3gg	chr15:60644472-60644776(-)$1	304	154	157	8.9999
C{C	chr11:32611001-32611257(+)$1	256	16	19	8.9999
DDD	chr11:760108-760339(+)$1	231	10	13	8.9999
QQA	chr17:74068312-74068574(-)$1	262	17	20	8.9999
:DD	chr1:23664918-23665153(-)$1	235	98	101	8.9999
:::	chr20:57485636-57485875(+)$1	239	0	3	8.9999
LLL	chr19:49611041-49611334(+)$1	293	7	10	8.9999
GGG	chr19:40329662-40329932(-)$1	270	0	3	8.9999
::F	chr19:3462897-3463187(+)$1	290	33	36	8.9999
ppe	chr20:57019032-57019321(+)$1	289	18	21	8.9999
%gg	chr1:153963941-153964144(+)$1	203	48	51	8.9999
ddd	chr6:163955915-163956224(+)$1	309	23	26	8.9999
eee	chr1:150192894-150193164(-)$1	270	185	188	8.9999
C{G	chr1:156713091-156713346(-)$1	255	4	7	8.9999
llb	chr7:35942692-35942926(+)$1	234	35	38	8.9999
AKK	chr19:54647872-54648100(+)$1	228	124	127	8.9999
d:E	chr11:77333594-77333819(-)$1	225	17	20	8.9999
Dii	chr1:156104537-156104815(+)$1	278	7	10	8.9999
nnn	chr11:118886462-118886676(-)$1	214	52	55	8.9999
[ff	chr17:40133856-40134122(-)$1	266	17	20	8.9999
{DD	chr15:69072648-69072895(-)$1	247	27	30	8.9999
:CC	chr8:117862760-117863095(-)$1	335	8	11	8.9999
oee	chr4:129192379-129192668(-)$1	289	133	136	8.9999
EEE	chr9:139734795-139735093(+)$1	298	62	65	8.9999
lle	chr19:10270607-10270840(-)$1	233	9	12	8.9999
eee	chr3:40503511-40503726(+)$1	215	48	51	8.9999
CCM	chr8:11666205-11666495(+)$1	290	10	13	8.9999
ddl	chr9:136901249-136901542(-)$1	293	3	6	8.9999
[ee	chr2:132010395-132010661(+)$1	266	92	95	8.9999
E::	chr9:37588695-37588954(-)$1	259	22	25	8.9999
G{I	chr11:62334325-62334584(-)$1	259	6	9	8.9999
::=	chr4:83278467-83278697(-)$1	230	97	100	8.9999
b!!	chr16:11931787-11932056(-)$1	269	14	17	8.9999
:::	chr6:111346532-111346857(+)$1	325	5	8	8.9999
D::	chr7:99697536-99697816(-)$1	280	97	100	8.9999
pff	chr6:33243507-33243760(+)$1	253	26	29	8.9999
DDD	chr17:80422090-80422368(+)$1	278	134	137	8.9999
ppp	chr11:18420883-18421154(+)$1	271	11	14	8.9999
{CC	chr2:101622317-101622577(+)$1	260	4	7	8.9999
:DD	chr19:49994885-49995121(+)$1	236	13	16	8.9999
EKK	chr17:40134165-40134520(-)$1	355	24	27	8.9999
CCF	chr10:79799872-79800083(+)$1	211	1	4	8.9999
::f	chr12:53421816-53422051(+)$1	235	1	4	8.9999
DDD	chr12:108920106-108920359(-)$1	253	31	34	8.9999
ooc	chr19:14199905-14200266(-)$1	361	32	35	8.9999
ccc	chr17:4575246-4575509(-)$1	263	123	126	8.9999
::F	chr20:57603698-57603998(-)$1	300	5	8	8.9999
EEE	chr19:50002668-50002876(+)$1	208	6	9	8.9999
e[b	chr19:5641545-5641770(+)$1	225	56	59	8.9999
DDC	chr4:1729375-1729638(+)$1	263	17	20	8.9999
ddd	chr5:137521887-137522188(+)$1	301	37	40	8.9999
EED	chr10:79799863-79800071(+)$1	208	10	13	8.9999
%gg	chr1:153963974-153964243(+)$1	269	15	18	8.9999
GG:	chr5:96107281-96107507(+)$1	226	25	28	8.9999
fff	chr9:127620141-127620355(-)$1	214	6	9	8.9999
doo	chr19:19603355-19603622(+)$1	267	31	34	8.9999
GGG	chr12:76449714-76449934(-)$1	220	106	109	8.9999
##b	chr15:59182390-59182722(-)$1	332	16	19	8.9999
ddd	chr13:28008896-28009177(+)$1	281	42	45	8.9999
GGG	chr19:34941152-34941368(+)$1	216	34	37	8.9999
DDD	chr9:19379387-19379633(-)$1	246	33	36	8.9999
ggg	chr1:27105613-27105897(+)$1	284	25	28	8.9999
A{A	chr12:49521683-49521992(-)$1	309	9	12	8.9999
HHH	chr8:117669353-117669638(-)$1	285	4	7	8.9999
bcc	chr8:56985687-56985931(-)$1	244	38	41	8.9999
::e	chr11:130011310-130011564(+)$1	254	5	8	8.9999

#DB
.((	chr4:77951884-77952226(+)$1	1	48	51	8.9999
(.(	chr17:79801807-79802069(-)$1	1	23	26	8.9999
...	chr18:158456-158718(+)$1	1	24	27	8.9999
...	chr3:40503329-40503531(+)$1	1	8	11	8.9999
..(	chr12:57107339-57107567(-)$1	1	124	127	8.9999
(((	chr4:174253112-174253364(-)$1	1	12	15	8.9999
...	chr11:61732417-61732680(-)$1	1	93	96	8.9999
...	chr6:27115123-27115398(+)$1	1	96	99	8.9999
..)	chr11:290480-290726(+)$1	1	56	59	8.9999
..(	chr8:144921729-144921971(-)$1	1	2	5	8.9999
(((	chr1:206566800-206567084(+)$1	1	98	101	8.9999
(((	chr3:184042589-184042863(+)$1	1	6	9	8.9999
(((	chr17:80017733-80018014(-)$1	1	8	11	8.9999
)))	chr19:50002676-50002921(+)$1	1	89	92	8.9999
(((	chr12:124017849-124018153(-)$1	1	2	5	8.9999
(..	chr1:205718994-205719230(-)$1	1	1	4	8.9999
((.	chr5:149778483-149778734(+)$1	1	29	32	8.9999
(((	chr15:66791644-66791857(-)$1	1	2	5	8.9999
...	chr11:289710-289965(+)$1	1	0	3	8.9999
.))	chr8:56985627-56985887(-)$1	1	53	56	8.9999
.((	chr16:56642399-56642645(+)$1	1	13	16	8.9999
...	chr19:30503091-30503388(+)$1	1	0	3	8.9999
(((	chr19:39328939-39329201(-)$1	1	23	26	8.9999
(((	chr12:76443439-76443651(-)$1	1	8	11	8.9999
...	chr1:29475021-29475264(-)$1	1	0	3	8.9999
...	chr17:1257403-1257661(-)$1	1	31	34	8.9999
.((	chr18:12310848-12311127(+)$1	1	0	3	8.9999
(((	chr11:65732778-65733019(+)$1	1	31	34	8.9999
(((	chr19:59069547-59069825(-)$1	1	55	58	8.9999
)))	chr7:99686812-99687039(+)$1	1	44	47	8.9999
(((	chr3:185636052-185636309(-)$1	1	2	5	8.9999
)))	chr12:104325983-104326235(+)$1	1	87	90	8.9999
...	chr13:107220068-107220377(-)$1	1	28	31	8.9999
.))	chr15:60644472-60644776(-)$1	1	154	157	8.9999
(.(	chr11:32611001-32611257(+)$1	1	16	19	8.9999
(((	chr11:760108-760339(+)$1	1	10	13	8.9999
..(	chr17:74068312-74068574(-)$1	1	17	20	8.9999
.))	chr1:23664918-23665153(-)$1	1	98	101	8.9999
...	chr20:57485636-57485875(+)$1	1	0	3	8.9999
...	chr19:49611041-49611334(+)$1	1	7	10	8.9999
(((	chr19:40329662-40329932(-)$1	1	0	3	8.9999
..(	chr19:3462897-3463187(+)$1	1	33	36	8.9999
..)	chr20:57019032-57019321(+)$1	1	18	21	8.9999
.((	chr1:153963941-153964144(+)$1	1	48	51	8.9999
(((	chr6:163955915-163956224(+)$1	1	23	26	8.9999
(((	chr1:150192894-150193164(-)$1	1	185	188	8.9999
(.(	chr1:156713091-156713346(-)$1	1	4	7	8.9999
..)	chr7:35942692-35942926(+)$1	1	35	38	8.9999
(..	chr19:54647872-54648100(+)$1	1	124	127	8.9999
).(	chr11:77333594-77333819(-)$1	1	17	20	8.9999
(((	chr1:156104537-156104815(+)$1	1	7	10	8.9999
...	chr11:118886462-118886676(-)$1	1	52	55	8.9999
.((	chr17:40133856-40134122(-)$1	1	17	20	8.9999
.((	chr15:69072648-69072895(-)$1	1	27	30	8.9999
.((	chr8:117862760-117863095(-)$1	1	8	11	8.9999
.))	chr4:129192379-129192668(-)$1	1	133	136	8.9999
(((	chr9:139734795-139735093(+)$1	1	62	65	8.9999
..)	chr19:10270607-10270840(-)$1	1	9	12	8.9999
)))	chr3:40503511-40503726(+)$1	1	48	51	8.9999
((.	chr8:11666205-11666495(+)$1	1	10	13	8.9999
((.	chr9:136901249-136901542(-)$1	1	3	6	8.9999
.((	chr2:132010395-132010661(+)$1	1	92	95	8.9999
(..	chr9:37588695-37588954(-)$1	1	22	25	8.9999
(.(	chr11:62334325-62334584(-)$1	1	6	9	8.9999
..(	chr4:83278467-83278697(-)$1	1	97	100	8.9999
(..	chr16:11931787-11932056(-)$1	1	14	17	8.9999
...	chr6:111346532-111346857(+)$1	1	5	8	8.9999
(..	chr7:99697536-99697816(-)$1	1	97	100	8.9999
.))	chr6:33243507-33243760(+)$1	1	26	29	8.9999
(((	chr17:80422090-80422368(+)$1	1	134	137	8.9999
...	chr11:18420883-18421154(+)$1	1	11	14	8.9999
.((	chr2:101622317-101622577(+)$1	1	4	7	8.9999
.((	chr19:49994885-49995121(+)$1	1	13	16	8.9999
(..	chr17:40134165-40134520(-)$1	1	24	27	8.9999
(((	chr10:79799872-79800083(+)$1	1	1	4	8.9999
..(	chr12:53421816-53422051(+)$1	1	1	4	8.9999
(((	chr12:108920106-108920359(-)$1	1	31	34	8.9999
..)	chr19:14199905-14200266(-)$1	1	32	35	8.9999
(((	chr17:4575246-4575509(-)$1	1	123	126	8.9999
..(	chr20:57603698-57603998(-)$1	1	5	8	8.9999
(((	chr19:50002668-50002876(+)$1	1	6	9	8.9999
(.(	chr19:5641545-5641770(+)$1	1	56	59	8.9999
(((	chr4:1729375-1729638(+)$1	1	17	20	8.9999
(((	chr5:137521887-137522188(+)$1	1	37	40	8.9999
(((	chr10:79799863-79800071(+)$1	1	10	13	8.9999
.((	chr1:153963974-153964243(+)$1	1	15	18	8.9999
((.	chr5:96107281-96107507(+)$1	1	25	28	8.9999
(((	chr9:127620141-127620355(-)$1	1	6	9	8.9999
(..	chr19:19603355-19603622(+)$1	1	31	34	8.9999
(((	chr12:76449714-76449934(-)$1	1	106	109	8.9999
..(	chr15:59182390-59182722(-)$1	1	16	19	8.9999
)))	chr13:28008896-28009177(+)$1	1	42	45	8.9999
(((	chr19:34941152-34941368(+)$1	1	34	37	8.9999
(((	chr9:19379387-19379633(-)$1	1	33	36	8.9999
)))	chr1:27105613-27105897(+)$1	1	25	28	8.9999
(.(	chr12:49521683-49521992(-)$1	1	9	12	8.9999
(((	chr8:117669353-117669638(-)$1	1	4	7	8.9999
(((	chr8:56985687-56985931(-)$1	1	38	41	8.9999
..(	chr11:130011310-130011564(+)$1	1	5	8	8.9999

#PSSM
C : 0.92	c : 0.07	
A : 0.91	a : 0.08	
G : 0.91	g : 0.08	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_CDS_m1_run1.nuc.txt

#NT
AGGACGAgg	chr11:62494441-62494785(-)$1	344	284	293	16.7916
AUGAAGAUG	chr10:127519028-127519291(+)$1	263	139	148	14.9166
AGGAAGCAG	chr19:11107074-11107321(+)$1	247	149	158	15.3333
AAGAAAAGG	chr12:76449714-76449939(-)$1	225	8	17	13.8750
AAGAAGAAG	chr11:57093832-57094053(-)$1	221	108	117	17.0000
AGGAAGAUG	chr10:133784265-133784575(-)$1	310	105	114	18.1458
AGGCAGAGG	chr3:184042564-184042836(+)$1	272	99	108	16.1666
AGGCAGAGG	chr12:56511164-56511395(+)$1	231	126	135	16.1666
AGGAUGAGG	chr9:100774617-100774828(+)$1	211	122	131	17.1041
AUGAAGAAG	chr12:76453477-76453679(-)$1	202	82	91	16.4791
AGAAAGAAG	chr5:74066505-74066735(+)$1	230	28	37	15.2291
AGGAAGAGG	chr1:15736379-15736698(+)$1	319	11	20	20.6458
AGgaagaag	chr14:35550127-35550496(+)$1	369	98	107	19.7083
aggaagagg	chr8:95541196-95541409(-)$1	213	61	70	20.6458
AGGAUGAGG	chr9:100774641-100774848(+)$1	207	98	107	17.1041
AGGAAGCGG	chr20:45849933-45850170(-)$1	237	60	69	16.2708
AUGAAGAGG	chr2:61719622-61719894(-)$1	272	152	161	17.4166
AGGAAGAAA	chr1:154143027-154143275(-)$1	248	113	122	15.2291
aggaggagg	chr5:43556779-43557047(-)$1	268	75	84	16.7916
AAGAAGAAG	chr12:6687529-6687768(-)$1	239	68	77	17.0000
aggaagaag	chrX:70683651-70683910(+)$1	259	108	117	19.7083
AGGAAGAAG	chr7:100482829-100483080(+)$1	251	34	43	19.7083
AGGAAGAGG	chr3:48641983-48642251(-)$1	268	179	188	20.6458
AUGAAGAUG	chr10:70549382-70549636(+)$1	254	84	93	14.9166
AGGACGAGG	chr18:9535645-9535933(+)$1	288	141	150	16.7916
AAGAAGAGG	chr10:71142403-71142652(+)$1	249	35	44	17.9375
AAGAAGAAG	chr1:29474974-29475262(-)$1	288	32	41	17.0000
AGGAAGAGG	chr21:45107412-45107702(+)$1	290	5	14	20.6458
AGGAAGAGA	chr17:37360790-37361034(+)$1	244	91	100	16.1666
AGGAAGAAG	chr2:136529885-136530123(+)$1	238	141	150	19.7083
AGGAAGAAG	chr19:13054520-13054770(+)$1	250	61	70	19.7083
AAGAAGAGC	chr6:26056150-26056370(-)$1	220	155	164	13.3541
AGCAAGAAG	chr6:28359213-28359520(-)$1	307	40	49	15.1250
AGGGAGAGG	chr6:35610390-35610719(-)$1	329	179	188	16.0625
aggaugagg	chr1:150198839-150199049(-)$1	210	9	18	17.1041
aggaagagg	chr2:99992742-99993092(+)$1	350	166	175	20.6458
aggaugaag	chr14:102549270-102549478(-)$1	208	10	19	16.1666
AGGAUGAGG	chr19:47231779-47232107(-)$1	328	110	119	17.1041
AGGAAGUGG	chr14:102452047-102452307(+)$1	260	106	115	16.1666
AAGAAAAGG	chr6:31637509-31637860(+)$1	351	323	332	13.8750
aggaaaagg	chr5:140085129-140085479(+)$1	350	69	78	16.5833
aggaagaag	chr9:100777563-100777773(+)$1	210	85	94	19.7083
AGGAAGGAG	chr19:5593859-5594084(-)$1	225	70	79	15.2291
AAAAAGAGG	chr21:34136556-34136785(-)$1	229	52	61	13.4583
aagaagaag	chrX:64956632-64956864(+)$1	232	43	52	17.0000
AGGAACAAG	chr19:11170705-11170963(+)$1	258	144	153	15.3333
AGGAGGAGG	chr12:6715339-6715569(-)$1	230	76	85	16.7916

#otherMatches

#Struct PSSM
ZCCCZZZEE	chrX:70514018-70514334(+)$1	316	273	282	16.5833
66666ffff	chr11:62494441-62494785(-)$1	344	284	293	16.7916
[dddd"""g	chr10:127519028-127519291(+)$1	263	139	148	14.9166
EEEYYBBff	chr19:11107074-11107321(+)$1	247	149	158	15.3333
:EEEEE{BB	chr12:76449714-76449939(-)$1	225	8	17	13.8750
gggg]dddd	chr11:57093832-57094053(-)$1	221	108	117	17.0000
rrrgggggg	chr10:133784265-133784575(-)$1	310	105	114	18.1458
eeeccc]cc	chr3:184042564-184042836(+)$1	272	99	108	16.1666
ff!!bb[cc	chr12:56511164-56511395(+)$1	231	126	135	16.1666
FEEEEE::c	chr9:100774617-100774828(+)$1	211	122	131	17.1041
!annnnna2	chr12:76453477-76453679(-)$1	202	82	91	16.4791
+++++++++	chr5:74066505-74066735(+)$1	230	28	37	15.2291
wwwwwwwww	chr1:15736379-15736698(+)$1	319	11	20	20.6458
ooooooiii	chr14:35550127-35550496(+)$1	369	98	107	19.7083
sssssseee	chr8:95541196-95541409(-)$1	213	61	70	20.6458
FEEEEE::c	chr9:100774641-100774848(+)$1	207	98	107	17.1041
ddddbb]af	chr20:45849933-45850170(-)$1	237	60	69	16.2708
::::::HHH	chr2:61719622-61719894(-)$1	272	152	161	17.4166
bb!!ddddp	chr1:154143027-154143275(-)$1	248	113	122	15.2291
]bbdddd]d	chr5:43556779-43557047(-)$1	268	75	84	16.7916
77iiiiiii	chr12:6687529-6687768(-)$1	239	68	77	17.0000
JJJJJ}A::	chrX:70683651-70683910(+)$1	259	108	117	19.7083
:::::::::	chr7:100482829-100483080(+)$1	251	34	43	19.7083
3bb]ccc22	chr3:48641983-48642251(-)$1	268	179	188	20.6458
uuuuuuuhh	chr10:70549382-70549636(+)$1	254	84	93	14.9166
33bb]bb::	chr18:9535645-9535933(+)$1	288	141	150	16.7916
PPPPPPDDD	chr10:71142403-71142652(+)$1	249	35	44	17.9375
:::::::::	chr1:29474974-29475262(-)$1	288	32	41	17.0000
:CCC:ffff	chr21:45107412-45107702(+)$1	290	5	14	20.6458
HHHHHHddd	chr17:37360790-37361034(+)$1	244	91	100	16.1666
bb[ccc!!d	chr2:136529885-136530123(+)$1	238	141	150	19.7083
++++++++a	chr19:13054520-13054770(+)$1	250	61	70	19.7083
::::::::d	chr6:26056150-26056370(-)$1	220	155	164	13.3541
iii:GGGGG	chr6:28359213-28359520(-)$1	307	40	49	15.1250
eebb:dddd	chr6:35610390-35610719(-)$1	329	179	188	16.0625
:::::::::	chr1:150198839-150199049(-)$1	210	9	18	17.1041
///DDDD}F	chr2:99992742-99993092(+)$1	350	166	175	20.6458
^^^^^^^^^	chr14:102549270-102549478(-)$1	208	10	19	16.1666
gg:::::::	chr19:47231779-47232107(-)$1	328	110	119	17.1041
IIIIcccoo	chr14:102452047-102452307(+)$1	260	106	115	16.1666
eeee22ccc	chr6:31637509-31637860(+)$1	351	323	332	13.8750
JJJJJJGGG	chr5:140085129-140085479(+)$1	350	69	78	16.5833
22bb333cc	chr9:100777563-100777773(+)$1	210	85	94	19.7083
>>>>>>>>>	chr19:5593859-5594084(-)$1	225	70	79	15.2291
%%%%%gggg	chr21:34136556-34136785(-)$1	229	52	61	13.4583
zzzzzzzee	chrX:64956632-64956864(+)$1	232	43	52	17.0000
qqqqbb:::	chr19:11170705-11170963(+)$1	258	144	153	15.3333
cc22bb:EE	chr12:6715339-6715569(-)$1	230	76	85	16.7916

#DB
.)))...))	chrX:70514018-70514334(+)$1	1	273	282	16.5833
.....))))	chr11:62494441-62494785(-)$1	1	284	293	16.7916
.((((...(	chr10:127519028-127519291(+)$1	1	139	148	14.9166
)))..))((	chr19:11107074-11107321(+)$1	1	149	158	15.3333
.(((((.((	chr12:76449714-76449939(-)$1	1	8	17	13.8750
)))).))))	chr11:57093832-57094053(-)$1	1	108	117	17.0000
...))))))	chr10:133784265-133784575(-)$1	1	105	114	18.1458
)))))).))	chr3:184042564-184042836(+)$1	1	99	108	16.1666
((..((.((	chr12:56511164-56511395(+)$1	1	126	135	16.1666
((((((..(	chr9:100774617-100774828(+)$1	1	122	131	17.1041
.(.....).	chr12:76453477-76453679(-)$1	1	82	91	16.4791
.........	chr5:74066505-74066735(+)$1	1	28	37	15.2291
.........	chr1:15736379-15736698(+)$1	1	11	20	20.6458
......)))	chr14:35550127-35550496(+)$1	1	98	107	19.7083
......)))	chr8:95541196-95541409(-)$1	1	61	70	20.6458
((((((..(	chr9:100774641-100774848(+)$1	1	98	107	17.1041
)))))).))	chr20:45849933-45850170(-)$1	1	60	69	16.2708
......(((	chr2:61719622-61719894(-)$1	1	152	161	17.4166
((..((((.	chr1:154143027-154143275(-)$1	1	113	122	15.2291
.)))))).)	chr5:43556779-43557047(-)$1	1	75	84	16.7916
..)))))))	chr12:6687529-6687768(-)$1	1	68	77	17.0000
))))).)..	chrX:70683651-70683910(+)$1	1	108	117	19.7083
.........	chr7:100482829-100483080(+)$1	1	34	43	19.7083
.)).)))..	chr3:48641983-48642251(-)$1	1	179	188	20.6458
.......))	chr10:70549382-70549636(+)$1	1	84	93	14.9166
..)).))..	chr18:9535645-9535933(+)$1	1	141	150	16.7916
......(((	chr10:71142403-71142652(+)$1	1	35	44	17.9375
.........	chr1:29474974-29475262(-)$1	1	32	41	17.0000
.(((.((((	chr21:45107412-45107702(+)$1	1	5	14	20.6458
(((((((((	chr17:37360790-37361034(+)$1	1	91	100	16.1666
((.(((..(	chr2:136529885-136530123(+)$1	1	141	150	19.7083
........(	chr19:13054520-13054770(+)$1	1	61	70	19.7083
........(	chr6:26056150-26056370(-)$1	1	155	164	13.3541
))).(((((	chr6:28359213-28359520(-)$1	1	40	49	15.1250
)))).((((	chr6:35610390-35610719(-)$1	1	179	188	16.0625
.........	chr1:150198839-150199049(-)$1	1	9	18	17.1041
...)))).)	chr2:99992742-99993092(+)$1	1	166	175	20.6458
.........	chr14:102549270-102549478(-)$1	1	10	19	16.1666
)).......	chr19:47231779-47232107(-)$1	1	110	119	17.1041
))))(((..	chr14:102452047-102452307(+)$1	1	106	115	16.1666
))))..)))	chr6:31637509-31637860(+)$1	1	323	332	13.8750
(((((((((	chr5:140085129-140085479(+)$1	1	69	78	16.5833
..))...))	chr9:100777563-100777773(+)$1	1	85	94	19.7083
.........	chr19:5593859-5594084(-)$1	1	70	79	15.2291
.....((((	chr21:34136556-34136785(-)$1	1	52	61	13.4583
.......))	chrX:64956632-64956864(+)$1	1	43	52	17.0000
....))...	chr19:11170705-11170963(+)$1	1	144	153	15.3333
))..)).((	chr12:6715339-6715569(-)$1	1	76	85	16.7916

#PSSM
A : 0.81	a : 0.18	
G : 0.56	A : 0.16	g : 0.16	U : 0.08	a : 0.02	
G : 0.72	g : 0.20	A : 0.04	C : 0.02	
A : 0.72	a : 0.20	C : 0.04	G : 0.02	
A : 0.66	a : 0.14	U : 0.06	C : 0.04	u : 0.04	g : 0.02	G : 0.02	
G : 0.70	g : 0.18	A : 0.06	a : 0.02	C : 0.02	
A : 0.70	a : 0.20	C : 0.04	U : 0.02	G : 0.02	
G : 0.43	A : 0.27	g : 0.12	a : 0.10	U : 0.06	
G : 0.70	g : 0.22	A : 0.04	C : 0.02	

#score	817.25
#seq	48
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_transcript_m1_run2.nuc.txt

#NT
GAGGGUGGUGGGAGGUGGGUGGGAGGUGGUGGUGG	chr12:54679569-54679839(+)$1	270	80	115	31.6326
gguggaggugugggguguguggaugggGGUUGGGG	chr7:76628212-76628445(+)$1	233	118	153	35.1020
gagagcgggugggaggggcccgggaggggagggga	chr5:172483832-172484084(+)$1	252	43	78	26.9387
gguggggggcgggaccgggggcgcgcggggugggg	chr4:2935990-2936301(-)$1	311	72	107	34.8979
guggguguguggguguggggguguggguguugggg	chr2:242838906-242839174(+)$1	268	49	84	33.5714
GGGAGGGGAGGGGAGGGGGUGUGGCCGGGAUGGGA	chr17:76124235-76124504(-)$1	269	72	107	31.5306
GGGGGUGGGGGUUGGUGUCUGGGGGGGGUUAAUGG	chr22:20110239-20110467(+)$1	228	54	89	27.8571
AGUGUGGGUGGGGAGAGCCUGGCAGGGGGAGGGGG	chr8:142426846-142427090(+)$1	244	83	118	28.8775
GGGAGGAgccgggcggggcggggcggggggcggAA	chr1:245026275-245026514(-)$1	239	79	114	27.5510
GGGGCGGGGUGGGCGCAGCUCGGGGGCGGACUGGG	chr8:145107134-145107425(-)$1	291	79	114	25.7142
GGGGGGGGGGUGGGGGGAAUCUAUGGGGGGAGGGG	chr11:60658394-60658662(-)$1	268	86	121	34.7959
GGUGGGGGGGGGUUGAGGAACAGGGGGGGUGUGGG	chr11:61644619-61644884(-)$1	265	99	134	31.7346
gggggugggggugugugggggucuguaggggggug	chr2:97560348-97560591(-)$1	243	160	195	33.6734
GUAGGUGGGGUGGGGAGUGGGGCCCCGGGGUGGGG	chr16:30535380-30535645(-)$1	265	193	228	29.8979
GGGUGUUAGGGGGAGGGUAGGCGGGCGGGUGUGGG	chr16:89555785-89556017(-)$1	232	175	210	28.8775
ggagcuggggggggugggaggggggggagAGUGAG	chr6:34664409-34664669(-)$1	260	82	117	29.8979
gguggggaggaggagggggagAGGUGGGGAUGGGC	chr17:55333777-55334021(+)$1	244	48	83	30.8163
gugggggagggggcgucgaggggcgcggggUGAAG	chr15:64753117-64753366(+)$1	249	104	139	28.5714
gggcgagcggguggcaggcggggggugggguuggg	chr14:23791032-23791285(+)$1	253	64	99	31.2244
ggcgguggggggggcUGUGACAGCGGAGGGGGGUG	chr19:47733491-47733746(-)$1	255	75	110	28.3673
CGGAGAGGGGGCGCGCGGCGUGGUGGGGGAGGGGG	chr6:29600544-29600832(-)$1	288	237	272	34.3877
GUGGGUGGGuggggcucggaggcugugggaugggg	chr12:132401568-132401818(+)$1	250	43	78	33.1632
GGGUGGGGGGGGGGGUCCCAGCCGUGGGGAAGUGG	chr6:4777164-4777411(+)$1	247	89	124	26.9387
aggggaggggagggaagggaggagggaggaagggc	chr19:3459570-3459839(+)$1	269	84	119	27.5510
GCGGGAGGGCGCCGCGGUGAGGGUGGGGGAGGGGG	chr1:245026651-245026912(-)$1	261	93	128	31.6326
UGGGGCGGGGAGGGGCAGUAGGGUGGGGGGAUGGG	chr19:4038352-4038641(+)$1	289	77	112	32.9591
UUGGGGGGGGGUGGGUUUGUGGGUGGGUGAUGGUG	chr6:42750004-42750260(+)$1	256	75	110	28.5714
ggggcggggcgggaggggaggucucgggggcgggg	chr19:4457168-4457410(-)$1	242	72	107	34.3877
gcgggccugggggaggggcagggcggggguggggg	chr17:80230765-80231027(-)$1	262	213	248	36.5306
GGGGGUGUGGGGCGGAGGAGGGAUUUGGGGGCGGC	chr1:27929166-27929417(-)$1	251	82	117	27.7551
GCGCGGAGGGUGGUGCCGCGGGGUGGGGGGGGGGG	chr20:31171706-31171998(-)$1	292	66	101	33.4693
gggagagcgggggaguggggggguggggguggggg	chr19:3698791-3699036(-)$1	245	72	107	44.2857
CGGGGAGGGGGUGGGGGGAGGGCCCGGGAAAAGGG	chr2:28974727-28975030(+)$1	303	102	137	27.8571
gggggguggggggagggcaggcgagcgcgaggggg	chr6:149638675-149638946(+)$1	271	64	99	34.5918
gcgggcggcggggaggggcggggaggggcgccggg	chr19:3062292-3062531(-)$1	239	91	126	32.9591
gggggugggggggaguggaagggugggggaugggg	chr2:102334984-102335242(+)$1	258	50	85	50.1020
GGGGGUGGUUGGGGGUGUGUGGUUGGGGGUCUGgu	chr22:20110453-20110713(+)$1	260	98	133	31.3265
gggggugggggugugugggggucuguaggggggug	chr2:97560212-97560465(-)$1	253	34	69	33.6734
GGGCCGGGAGAGCGGAGUCGGGGAGUGGGGCGGGG	chr1:213031640-213031908(+)$1	268	90	125	27.9591
ggccgggggcggguggggaggggggagggcggcgg	chr8:30669835-30670091(-)$1	256	79	114	32.0408
ugugggggggaugacuggguggguguggguggggg	chr2:97560518-97560753(-)$1	235	123	158	32.1428
GGGUGUGGGGAGAGGCCUGUGGGAGGUGGAUGGGU	chr4:715641-715922(+)$1	281	92	127	26.6326
GGGCGGAGGGGGGGGAGGUGGGCUGGAAGCUGGGA	chrX:39955948-39956180(-)$1	232	72	107	29.4897
gguggugggggugggggugggagagguggcugggg	chr15:38776586-38776855(+)$1	269	16	51	36.0204
GGGGGGUGGGGGGUGGAGGUGGGAGGGGGUUGAGG	chr5:145666606-145666854(+)$1	248	78	113	37.4489
GGGGGUGGGGAGGCGCGGCGCGGCGUGAGGAGGCC	chr5:170815514-170815743(+)$1	229	14	49	27.3469
GGGGAGGGAGGGGAGUGUCAGAGUGUGAGCGGGGU	chr16:31044909-31045190(+)$1	281	119	154	27.3469
gggagggagggaggaaggaagggagggagggaggg	chr10:75785377-75785626(+)$1	249	66	101	28.8775

#otherMatches

#Struct PSSM
e:::::::::::::::bb[bbggggggg!!ggggg	chr1:1192716-1193004(-)$1	288	214	249	41.1224
]a]a]a]ffffff::A{EEEEEKKBB{CCCa[a[c	chr12:54679569-54679839(+)$1	270	80	115	31.6326
::::::a[eeeee####a[dddd[ddddeeeee[c	chr7:76628212-76628445(+)$1	233	118	153	35.1020
bb22bb]eeeee]bb]bbffffff:::::::::AK	chr5:172483832-172484084(+)$1	252	43	78	26.9387
lccc]a333ccc22bbffffff[bb[ffffff[a[	chr4:2935990-2936301(-)$1	311	72	107	34.8979
[dddd"""ggggggg[gggggggddddeeeeebb[	chr2:242838906-242839174(+)$1	268	49	84	33.5714
c333eeeeeccc22dddd]eeeeebboooooobb:	chr17:76124235-76124504(-)$1	269	72	107	31.5306
ccc[bbqqqqqqqqbb]ccc]ccc]a55555ccc]	chr22:20110239-20110467(+)$1	228	54	89	27.8571
2dddd]cccCCCKKDDDDKKHHHHHHHHKKBBggg	chr8:142426846-142427090(+)$1	244	83	118	28.8775
pppppppeeeeeBB}DDDDdddd[ggggggg[bb[	chr1:245026275-245026514(-)$1	239	79	114	27.5510
KKCCCLLLGGGGGGGKKHHHHHHHHdddd[dddda	chr8:145107134-145107425(-)$1	291	79	114	25.7142
]ccciiiiiiiii[bb"""iiiiiiiiidddd"""	chr11:60658394-60658662(-)$1	268	86	121	34.7959
ccc]a]bbHHHHHHHH::::::gggggggpppppp	chr11:61644619-61644884(-)$1	265	99	134	31.7346
eee::::::::::a[bb[ffffff[bbuuuuuuuu	chr2:97560348-97560591(-)$1	243	160	195	33.6734
:::::ffffff[a[a[ffffff[ffffffoooooo	chr16:30535380-30535645(-)$1	265	193	228	29.8979
"a[a[bbnnnnnbb]a]a333bb]dddd]ccc:EE	chr16:89555785-89556017(-)$1	232	175	210	28.8775
CC{CCC{EEEEEMMMMEEEEEeeeee!!bb[a[a[	chr6:34664409-34664669(-)$1	260	82	117	29.8979
fffff"""dddd!!dddd[bb[ffffff####eee	chr17:55333777-55334021(+)$1	244	48	83	30.8163
cc:::ccc####bb[bb[ffffff[a!!ccc"""d	chr15:64753117-64753366(+)$1	249	104	139	28.5714
ff]bb]bb]ccc]bb:ccc####ccc[a[ddddrr	chr14:23791032-23791285(+)$1	253	64	99	31.2244
{A{FFFFFFbb[bbbb!!dddd[apppppppa]dd	chr19:47733491-47733746(-)$1	255	75	110	28.3673
f::::::::GGGGGGGCCC}DDDD______BB___	chr6:29600544-29600832(-)$1	288	237	272	34.3877
gggggg333bbffffff333aeeeee::ccc####	chr12:132401568-132401818(+)$1	250	43	78	33.1632
=========22ccc]dddd:ddddqqqqqqqqddd	chr6:4777164-4777411(+)$1	247	89	124	26.9387
3dddd]dddd22bb22bb22bb]ccc::::::DDD	chr19:3459570-3459839(+)$1	269	84	119	27.5510
ccc333dddd]bb88888888ffffff4444iiii	chr1:245026651-245026912(-)$1	261	93	128	31.6326
dd]dddd]aeeeee666666dddd22ggggggg]b	chr19:4038352-4038641(+)$1	289	77	112	32.9591
qqhhhhhhhh333eeeee55555ccc]ggggggg5	chr6:42750004-42750260(+)$1	256	75	110	28.5714
555bb]a]bb:::::::::gggggggmmmmggggg	chr19:4457168-4457410(-)$1	242	72	107	34.3877
cc333ccc]eeeee333bb333bb55555dddd22	chr17:80230765-80231027(-)$1	262	213	248	36.5306
ffffff]eeeee]a22ffffff4444ffffff22a	chr1:27929166-27929417(-)$1	251	82	117	27.7551
iiiii]a]a55555eeeee:HHHHHHHH{DDDD{B	chr20:31171706-31171998(-)$1	292	66	101	33.4693
DDDDKKBBJJJJJJJJJJJeeeee[ccceeeee##	chr19:3698791-3699036(-)$1	245	72	107	44.2857
hhhhhhh]eeeeehhhhhhhh]ccc22ccc]dddd	chr2:28974727-28975030(+)$1	303	102	137	27.8571
JJJJJJKKIIIIIIIII::dddd[bbbb[bb[ccc	chr6:149638675-149638946(+)$1	271	64	99	34.5918
cc]ccc]bba]eeeeeddddqqqqqqqqddddbb[	chr19:3062292-3062531(-)$1	239	91	126	32.9591
hhhh[iiiiiiiii!!ffffff[ggggggg[ffff	chr2:102334984-102335242(+)$1	258	50	85	50.1020
]a]a]a22bb]ccc::::::::eeeee[ccc!!ff	chr22:20110453-20110713(+)$1	260	98	133	31.3265
C{CCC::::::::::a[a[a[cccnnnnnccc]a]	chr2:97560212-97560465(-)$1	253	34	69	33.6734
D}DDDD}CCCYYBB}DDDD}A}A::::GGGGGGG{	chr1:213031640-213031908(+)$1	268	90	125	27.9591
a]eeeee]bbHHHHHHHH}BB:::::A{FFFFFF{	chr8:30669835-30670091(-)$1	256	79	114	32.0408
iiiiii55555a22bb22ccc4444ccc]ccc333	chr2:97560518-97560753(-)$1	235	123	158	32.1428
mmffffff::A}FFFFFF::eeeee[bb[gggggg	chr4:715641-715922(+)$1	281	92	127	26.6326
BEEEEE{BB{BB{BBNNNNNFFFFFF:ddddmmmm	chrX:39955948-39956180(-)$1	232	72	107	29.4897
:::::::::::::::ccc[aooooooa]ccc::::	chr15:38776586-38776855(+)$1	269	16	51	36.0204
d4444dddd4444dddd22==========GGGGGG	chr5:145666606-145666854(+)$1	248	78	113	37.4489
A{FFFFFF{BB{DDDD:::eeeee[ammmma]eee	chr5:170815514-170815743(+)$1	229	14	49	27.3469
b[bb"""ccc$$$$$a[bb"""a[ccc!!ffffff	chr16:31044909-31045190(+)$1	281	119	154	27.3469
:::::::::::::::::::::::::::::::::::	chr10:75785377-75785626(+)$1	249	66	101	28.8775

#DB
)...............((.(((((((((..(((((	chr1:1192716-1193004(-)$1	1	214	249	41.1224
.).).).))))))..(.(((((..((.((((.(.(	chr12:54679569-54679839(+)$1	1	80	115	31.6326
......(.(((((....(.((((.(((((((((.(	chr7:76628212-76628445(+)$1	1	118	153	35.1020
))..)).))))).)).)))))))).........(.	chr5:172483832-172484084(+)$1	1	43	78	26.9387
.))).)...)))..))((((((.((.((((((.(.	chr4:2935990-2936301(-)$1	1	72	107	34.8979
.((((...(((((((.((((((((((((((((((.	chr2:242838906-242839174(+)$1	1	49	84	33.5714
)...))))))))..)))).)))))((......)).	chr17:76124235-76124504(-)$1	1	72	107	31.5306
(((.((........)).))).))).).....))).	chr22:20110239-20110467(+)$1	1	54	89	27.8571
.)))).)))(((..((((..((((((((..(((((	chr8:142426846-142427090(+)$1	1	83	118	28.8775
.......))))))).))))((((.(((((((.((.	chr1:245026275-245026514(-)$1	1	79	114	27.5510
..(((...(((((((..((((((((((((.(((((	chr8:145107134-145107425(-)$1	1	79	114	25.7142
.)))(((((((((.((...(((((((((((((...	chr11:60658394-60658662(-)$1	1	86	121	34.7959
))).).))((((((((......(((((((......	chr11:61644619-61644884(-)$1	1	99	134	31.7346
)))..........(.((.((((((.((........	chr2:97560348-97560591(-)$1	1	160	195	33.6734
.....((((((.(.(.((((((.((((((......	chr16:30535380-30535645(-)$1	1	193	228	29.8979
.(.(.((.....)).).)...)).)))).))).))	chr16:89555785-89556017(-)$1	1	175	210	28.8775
((.(((.(((((....((((((((((..((.(.(.	chr6:34664409-34664669(-)$1	1	82	117	29.8979
(((((...((((..((((.((.((((((....(((	chr17:55333777-55334021(+)$1	1	48	83	30.8163
))...(((....((.((.((((((.(..(((...(	chr15:64753117-64753366(+)$1	1	104	139	28.5714
)).)).)).))).)).(((....(((.(.((((..	chr14:23791032-23791285(+)$1	1	64	99	31.2244
.(.((((((((.((((..((((.(.......).))	chr19:47733491-47733746(-)$1	1	75	110	28.3673
)........)))))))))).))))......))...	chr6:29600544-29600832(-)$1	1	237	272	34.3877
))))))...))))))))...))))))..(((....	chr12:132401568-132401818(+)$1	1	43	78	33.1632
)))))))))..))).)))).((((........)))	chr6:4777164-4777411(+)$1	1	89	124	26.9387
.)))).))))..))..))..)).)))......(((	chr19:3459570-3459839(+)$1	1	84	119	27.5510
)))...)))).))........))))))....))))	chr1:245026651-245026912(-)$1	1	93	128	31.6326
)).)))).))))))......))))..))))))).)	chr19:4038352-4038641(+)$1	1	77	112	32.9591
..))))))))...))))).....))).))))))).	chr6:42750004-42750260(+)$1	1	75	110	28.5714
...)).).)).........(((((((....)))))	chr19:4457168-4457410(-)$1	1	72	107	34.3877
))...))).)))))...))...)).....))))..	chr17:80230765-80231027(-)$1	1	213	248	36.5306
)))))).))))).)..))))))....))))))..)	chr1:27929166-27929417(-)$1	1	82	117	27.7551
))))).).).....))))).((((((((.((((.(	chr20:31171706-31171998(-)$1	1	66	101	33.4693
((((..((((((((((((((((((.((((((((..	chr19:3698791-3699036(-)$1	1	72	107	44.2857
))))))).))))))))))))).)))..))).))))	chr2:28974727-28975030(+)$1	1	102	137	27.8571
((((((..(((((((((..((((.((((.((.(((	chr6:149638675-149638946(+)$1	1	64	99	34.5918
)).))).))).)))))((((........))))((.	chr19:3062292-3062531(-)$1	1	91	126	32.9591
((((.(((((((((..((((((.(((((((.((((	chr2:102334984-102335242(+)$1	1	50	85	50.1020
.).).)..)).)))........(((((.(((..((	chr22:20110453-20110713(+)$1	1	98	133	31.3265
(.(((..........(.(.(.(((.....))).).	chr2:97560212-97560465(-)$1	1	34	69	33.6734
).)))).)))..)).)))).).)....(((((((.	chr1:213031640-213031908(+)$1	1	90	125	27.9591
).))))).)))))))))).)).....(.((((((.	chr8:30669835-30670091(-)$1	1	79	114	32.0408
)))))).....)..))..)))....))).)))...	chr2:97560518-97560753(-)$1	1	123	158	32.1428
..))))))..).))))))..(((((.((.((((((	chr4:715641-715922(+)$1	1	92	127	26.6326
((((((.((.((.((.....((((((.((((....	chrX:39955948-39956180(-)$1	1	72	107	29.4897
...............(((.(......).)))....	chr15:38776586-38776855(+)$1	1	16	51	36.0204
)....))))....))))..))))))))))((((((	chr5:145666606-145666854(+)$1	1	78	113	37.4489
(.((((((.((.((((...(((((.(....).)))	chr5:170815514-170815743(+)$1	1	14	49	27.3469
(.((...(((.....(.((...(.(((..((((((	chr16:31044909-31045190(+)$1	1	119	154	27.3469
...................................	chr10:75785377-75785626(+)$1	1	66	101	28.8775

#PSSM
G : 0.44	g : 0.40	C : 0.04	U : 0.04	A : 0.02	a : 0.02	u : 0.02	
G : 0.40	g : 0.34	U : 0.06	A : 0.04	u : 0.04	C : 0.04	c : 0.04	a : 0.02	
G : 0.48	g : 0.28	u : 0.10	U : 0.04	c : 0.04	A : 0.02	a : 0.02	
G : 0.36	g : 0.34	a : 0.06	A : 0.06	U : 0.06	C : 0.06	c : 0.04	
G : 0.46	g : 0.40	C : 0.04	c : 0.04	U : 0.02	A : 0.02	
G : 0.28	U : 0.18	g : 0.16	u : 0.14	a : 0.08	c : 0.06	A : 0.06	C : 0.02	
G : 0.44	g : 0.40	A : 0.06	U : 0.04	c : 0.02	u : 0.02	
G : 0.48	g : 0.32	a : 0.06	u : 0.04	c : 0.04	A : 0.02	U : 0.02	
G : 0.40	g : 0.40	U : 0.06	A : 0.06	c : 0.04	u : 0.02	
G : 0.44	g : 0.34	c : 0.08	u : 0.06	U : 0.04	C : 0.02	
g : 0.40	G : 0.36	A : 0.08	U : 0.06	a : 0.06	u : 0.02	
G : 0.40	g : 0.36	u : 0.10	U : 0.06	C : 0.04	a : 0.02	
g : 0.48	G : 0.36	C : 0.06	A : 0.04	U : 0.04	
G : 0.30	a : 0.20	g : 0.16	u : 0.08	A : 0.08	C : 0.06	U : 0.06	c : 0.04	
G : 0.48	g : 0.32	c : 0.10	a : 0.04	u : 0.02	C : 0.02	
g : 0.20	u : 0.18	G : 0.14	U : 0.14	A : 0.12	C : 0.12	a : 0.06	c : 0.02	
g : 0.42	G : 0.38	A : 0.06	C : 0.06	c : 0.04	U : 0.02	
g : 0.40	G : 0.24	U : 0.22	u : 0.04	C : 0.04	A : 0.02	c : 0.02	
g : 0.22	G : 0.20	C : 0.18	a : 0.14	c : 0.10	A : 0.10	U : 0.04	
g : 0.28	G : 0.20	U : 0.20	A : 0.12	a : 0.12	u : 0.04	c : 0.02	
g : 0.44	G : 0.38	C : 0.12	c : 0.02	U : 0.02	
G : 0.38	g : 0.30	u : 0.08	A : 0.08	c : 0.04	U : 0.04	C : 0.04	a : 0.02	
G : 0.36	g : 0.32	C : 0.10	c : 0.08	U : 0.04	a : 0.04	A : 0.04	
U : 0.20	u : 0.18	G : 0.16	A : 0.10	g : 0.10	c : 0.08	C : 0.08	a : 0.08	
G : 0.42	g : 0.40	C : 0.06	U : 0.06	a : 0.02	c : 0.02	
G : 0.40	g : 0.26	u : 0.10	U : 0.08	c : 0.06	C : 0.06	a : 0.02	
G : 0.44	g : 0.36	a : 0.06	U : 0.04	A : 0.04	C : 0.02	u : 0.02	
G : 0.48	g : 0.34	A : 0.06	a : 0.04	u : 0.02	U : 0.02	c : 0.02	
G : 0.53	g : 0.40	U : 0.02	A : 0.02	c : 0.02	
A : 0.24	g : 0.18	G : 0.16	U : 0.14	a : 0.10	u : 0.08	c : 0.04	C : 0.04	
G : 0.22	U : 0.20	g : 0.18	u : 0.12	A : 0.12	c : 0.06	C : 0.06	a : 0.02	
G : 0.42	g : 0.32	U : 0.12	A : 0.04	u : 0.02	C : 0.02	c : 0.02	a : 0.02	
G : 0.51	g : 0.36	U : 0.06	A : 0.04	c : 0.02	
G : 0.48	g : 0.34	A : 0.06	u : 0.04	U : 0.04	C : 0.02	
G : 0.44	g : 0.32	A : 0.06	C : 0.06	U : 0.04	a : 0.02	c : 0.02	u : 0.02	

#score	1560.1020408163265
#seq	49
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_transcript_m2_run1.nuc.txt

#NT
GGAGA	chr19:6707711-6707984(-)$1	273	58	63	15.0000
GGAGA	chr6:30551920-30552189(+)$1	269	193	198	15.0000
GGAGA	chr6:44224109-44224334(-)$1	225	62	67	15.0000
GGAGA	chr14:95085555-95085796(+)$1	241	228	233	15.0000
GGAGA	chr9:139113600-139113834(-)$1	234	118	123	15.0000
GGAGA	chr4:74285221-74285426(+)$1	205	113	118	15.0000
GGAGA	chr2:47707860-47708111(+)$1	251	87	92	15.0000
ggaga	chr16:89588114-89588385(+)$1	271	51	56	15.0000
GGAGA	chr17:73315174-73315421(-)$1	247	137	142	15.0000
GGAGA	chr2:219677560-219677812(+)$1	252	34	39	15.0000
GGAGA	chr8:38884172-38884426(+)$1	254	40	45	15.0000
GGAGA	chr14:23239913-23240203(+)$1	290	12	17	15.0000
GGAGA	chr2:54041578-54041851(+)$1	273	126	131	15.0000
GGAGA	chr3:133495946-133496165(+)$1	219	84	89	15.0000
GGAGA	chr10:82187019-82187342(+)$1	323	182	187	15.0000
GGAGA	chr5:154190977-154191184(+)$1	207	111	116	15.0000
GGAGA	chr6:160455379-160455620(+)$1	241	81	86	15.0000
GGAGA	chr6:42905385-42905670(+)$1	285	7	12	15.0000
GGAGA	chr3:97583246-97583512(+)$1	266	104	109	15.0000
GGAGA	chr20:43995851-43996123(+)$1	272	31	36	15.0000
GGAGA	chr12:8073084-8073378(-)$1	294	60	65	15.0000
GGAGA	chr2:70502607-70502846(+)$1	239	165	170	15.0000
GGAGA	chr2:216249482-216249686(-)$1	204	94	99	15.0000
GGAGA	chr17:29858547-29858761(+)$1	214	112	117	15.0000
GGAGA	chr16:74508362-74508628(-)$1	266	213	218	15.0000
GGAGA	chr15:25320838-25321102(+)$1	264	97	102	15.0000
GGAGA	chr13:48827847-48828115(+)$1	268	59	64	15.0000
GGAGA	chr2:216261821-216262027(-)$1	206	148	153	15.0000
GGAGA	chr6:31239355-31239564(-)$1	209	103	108	15.0000
GGAGA	chr3:145788492-145788749(-)$1	257	166	171	15.0000
GGAGA	chr14:24662151-24662412(-)$1	261	29	34	15.0000
GGAGA	chr7:137563199-137563461(-)$1	262	129	134	15.0000
GGAGA	chr12:9243824-9244053(-)$1	229	200	205	15.0000
GGAGA	chr17:29560030-29560307(+)$1	277	147	152	15.0000
GGAGA	chr12:56119499-56119745(-)$1	246	73	78	15.0000
GGAGA	chr1:150938379-150938606(-)$1	227	77	82	15.0000
GGAGA	chr2:216229604-216229808(-)$1	204	141	146	15.0000
GGAGA	chr12:9245960-9246189(-)$1	229	72	77	15.0000
GGAGA	chr1:211749279-211749549(-)$1	270	55	60	15.0000
GGAGA	chr3:186333473-186333677(+)$1	204	9	14	15.0000
GGAGA	chr14:31619164-31619432(-)$1	268	60	65	15.0000
GGAGA	chr19:49601804-49602060(+)$1	256	122	127	15.0000
GGAGA	chr18:33689352-33689610(-)$1	258	112	117	15.0000
GGAGA	chr20:43996172-43996406(+)$1	234	43	48	15.0000
GGAGA	chr3:186303393-186303651(+)$1	258	150	155	15.0000
GGAGA	chr3:133482946-133483171(+)$1	225	82	87	15.0000

#otherMatches

#Struct PSSM
ooooo	chr13:24249403-24249688(+)$1	285	138	143	15.0000
gg:::	chr19:6707711-6707984(-)$1	273	58	63	15.0000
eeeee	chr6:30551920-30552189(+)$1	269	193	198	15.0000
ttttt	chr6:44224109-44224334(-)$1	225	62	67	15.0000
FFFFF	chr14:95085555-95085796(+)$1	241	228	233	15.0000
=====	chr9:139113600-139113834(-)$1	234	118	123	15.0000
eeeee	chr4:74285221-74285426(+)$1	205	113	118	15.0000
EEEEE	chr2:47707860-47708111(+)$1	251	87	92	15.0000
{HHHH	chr16:89588114-89588385(+)$1	271	51	56	15.0000
=====	chr17:73315174-73315421(-)$1	247	137	142	15.0000
%%%%%	chr2:219677560-219677812(+)$1	252	34	39	15.0000
dddd[	chr8:38884172-38884426(+)$1	254	40	45	15.0000
D::a[	chr14:23239913-23240203(+)$1	290	12	17	15.0000
ggggg	chr2:54041578-54041851(+)$1	273	126	131	15.0000
^^^^^	chr3:133495946-133496165(+)$1	219	84	89	15.0000
ddddm	chr10:82187019-82187342(+)$1	323	182	187	15.0000
hhhhh	chr5:154190977-154191184(+)$1	207	111	116	15.0000
:::::	chr6:160455379-160455620(+)$1	241	81	86	15.0000
fffcc	chr6:42905385-42905670(+)$1	285	7	12	15.0000
ffff!	chr3:97583246-97583512(+)$1	266	104	109	15.0000
JJJJE	chr20:43995851-43996123(+)$1	272	31	36	15.0000
:gggg	chr12:8073084-8073378(-)$1	294	60	65	15.0000
e++++	chr2:70502607-70502846(+)$1	239	165	170	15.0000
BB{AL	chr2:216249482-216249686(-)$1	204	94	99	15.0000
ee[cc	chr17:29858547-29858761(+)$1	214	112	117	15.0000
c:::E	chr16:74508362-74508628(-)$1	266	213	218	15.0000
cccmm	chr15:25320838-25321102(+)$1	264	97	102	15.0000
ff"""	chr13:48827847-48828115(+)$1	268	59	64	15.0000
mdddd	chr2:216261821-216262027(-)$1	206	148	153	15.0000
:::::	chr6:31239355-31239564(-)$1	209	103	108	15.0000
ddlll	chr3:145788492-145788749(-)$1	257	166	171	15.0000
fffff	chr14:24662151-24662412(-)$1	261	29	34	15.0000
[bb[a	chr7:137563199-137563461(-)$1	262	129	134	15.0000
FFFFF	chr12:9243824-9244053(-)$1	229	200	205	15.0000
88fff	chr17:29560030-29560307(+)$1	277	147	152	15.0000
oobb:	chr12:56119499-56119745(-)$1	246	73	78	15.0000
ffff!	chr1:150938379-150938606(-)$1	227	77	82	15.0000
:JJJJ	chr2:216229604-216229808(-)$1	204	141	146	15.0000
bblll	chr12:9245960-9246189(-)$1	229	72	77	15.0000
mbb]d	chr1:211749279-211749549(-)$1	270	55	60	15.0000
ee[a[	chr3:186333473-186333677(+)$1	204	9	14	15.0000
cc:::	chr14:31619164-31619432(-)$1	268	60	65	15.0000
f&&&&	chr19:49601804-49602060(+)$1	256	122	127	15.0000
=="""	chr18:33689352-33689610(-)$1	258	112	117	15.0000
[a[ee	chr20:43996172-43996406(+)$1	234	43	48	15.0000
fffff	chr3:186303393-186303651(+)$1	258	150	155	15.0000
mmmma	chr3:133482946-133483171(+)$1	225	82	87	15.0000

#DB
.....	chr13:24249403-24249688(+)$1	1	138	143	15.0000
))...	chr19:6707711-6707984(-)$1	1	58	63	15.0000
(((((	chr6:30551920-30552189(+)$1	1	193	198	15.0000
.....	chr6:44224109-44224334(-)$1	1	62	67	15.0000
)))))	chr14:95085555-95085796(+)$1	1	228	233	15.0000
(((((	chr9:139113600-139113834(-)$1	1	118	123	15.0000
(((((	chr4:74285221-74285426(+)$1	1	113	118	15.0000
)))))	chr2:47707860-47708111(+)$1	1	87	92	15.0000
.((((	chr16:89588114-89588385(+)$1	1	51	56	15.0000
)))))	chr17:73315174-73315421(-)$1	1	137	142	15.0000
.....	chr2:219677560-219677812(+)$1	1	34	39	15.0000
((((.	chr8:38884172-38884426(+)$1	1	40	45	15.0000
(..(.	chr14:23239913-23240203(+)$1	1	12	17	15.0000
)))))	chr2:54041578-54041851(+)$1	1	126	131	15.0000
.....	chr3:133495946-133496165(+)$1	1	84	89	15.0000
((((.	chr10:82187019-82187342(+)$1	1	182	187	15.0000
)))))	chr5:154190977-154191184(+)$1	1	111	116	15.0000
.....	chr6:160455379-160455620(+)$1	1	81	86	15.0000
(((((	chr6:42905385-42905670(+)$1	1	7	12	15.0000
((((.	chr3:97583246-97583512(+)$1	1	104	109	15.0000
(((((	chr20:43995851-43996123(+)$1	1	31	36	15.0000
.((((	chr12:8073084-8073378(-)$1	1	60	65	15.0000
(....	chr2:70502607-70502846(+)$1	1	165	170	15.0000
((.(.	chr2:216249482-216249686(-)$1	1	94	99	15.0000
((.((	chr17:29858547-29858761(+)$1	1	112	117	15.0000
)...)	chr16:74508362-74508628(-)$1	1	213	218	15.0000
(((..	chr15:25320838-25321102(+)$1	1	97	102	15.0000
((...	chr13:48827847-48828115(+)$1	1	59	64	15.0000
.))))	chr2:216261821-216262027(-)$1	1	148	153	15.0000
.....	chr6:31239355-31239564(-)$1	1	103	108	15.0000
((...	chr3:145788492-145788749(-)$1	1	166	171	15.0000
(((((	chr14:24662151-24662412(-)$1	1	29	34	15.0000
.((.(	chr7:137563199-137563461(-)$1	1	129	134	15.0000
)))))	chr12:9243824-9244053(-)$1	1	200	205	15.0000
..)))	chr17:29560030-29560307(+)$1	1	147	152	15.0000
..)).	chr12:56119499-56119745(-)$1	1	73	78	15.0000
((((.	chr1:150938379-150938606(-)$1	1	77	82	15.0000
.))))	chr2:216229604-216229808(-)$1	1	141	146	15.0000
((...	chr12:9245960-9246189(-)$1	1	72	77	15.0000
.)).)	chr1:211749279-211749549(-)$1	1	55	60	15.0000
((.(.	chr3:186333473-186333677(+)$1	1	9	14	15.0000
))...	chr14:31619164-31619432(-)$1	1	60	65	15.0000
(....	chr19:49601804-49602060(+)$1	1	122	127	15.0000
((...	chr18:33689352-33689610(-)$1	1	112	117	15.0000
.(.((	chr20:43996172-43996406(+)$1	1	43	48	15.0000
(((((	chr3:186303393-186303651(+)$1	1	150	155	15.0000
....)	chr3:133482946-133483171(+)$1	1	82	87	15.0000

#PSSM
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	

#score	705.0000000000001
#seq	47
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_CDS_m1_run1.nuc.txt

#NT
UUUUUUUUUCC	chr1:151196607-151196861(+)$1	254	95	106	18.5084
uuuuuCCUUUU	chr1:160206868-160207119(-)$1	251	79	90	19.7796
UUUUUCUUUCC	chr11:3765719-3766002(-)$1	283	98	109	21.2203
UUUUUUCUUCU	chr2:238485809-238486130(-)$1	321	87	98	18.5084
CUUUUCUUUCA	chr1:155701622-155701892(+)$1	270	100	111	17.4067
UUUCUCUUUUU	chr10:79799833-79800069(+)$1	236	95	106	18.1694
UUUUUCUCUCC	chr15:63353727-63354019(+)$1	292	121	132	17.2372
AUUUUCUUUUU	chr14:35482901-35483162(+)$1	261	87	98	19.2711
UUUUUCUUAGU	chr16:24788147-24788426(+)$1	279	14	25	17.2372
CUCUUCUUUCU	chr13:39600375-39600634(-)$1	259	89	100	16.6440
UUUUUUUUUCC	chr7:26237345-26237580(-)$1	235	77	88	18.5084
UUUUUUUUUCC	chr1:36411216-36411432(+)$1	216	51	62	18.5084
UUUUUCUCUAU	chr2:64143951-64144241(-)$1	290	83	94	17.8305
UUUUUGUUUCC	chr16:58589662-58589924(-)$1	262	96	107	17.4915
UUUUucuuuuu	chr14:94744789-94745063(+)$1	274	92	103	22.8305
UUUUUCUUUGU	chr2:219613459-219613688(+)$1	229	32	43	21.6440
UUUUUUUUUUU	chr1:212141906-212142159(-)$1	253	91	102	20.1186
CUUUUCUUUCC	chr17:27000282-27000538(+)$1	256	91	102	17.8305
uuuuUCCUUCU	chr8:42177005-42177280(+)$1	275	72	83	21.2203
UUCUUCUUUCU	chr3:9475866-9476144(+)$1	278	7	18	20.0338
CAUUUCUUUCU	chr16:74943646-74943924(-)$1	278	254	265	16.0508
UUUUUCCUUCU	chr16:56536214-56536480(-)$1	266	95	106	21.2203
UUUUUUUGUCU	chr1:70697451-70697681(+)$1	230	47	58	17.2372
AUUUUCUUCCU	chr16:47698670-47698937(+)$1	267	161	172	16.5593
UUUUUCUCUCU	chr17:38288177-38288442(+)$1	265	86	97	20.2881
UUUUACUUUUU	chr5:32380114-32380387(-)$1	273	220	231	18.2542
CUUUUCUUUAU	chr14:39746029-39746286(+)$1	257	90	101	18.4237
UUUUUUUUUCU	chr10:81053012-81053313(+)$1	301	83	94	21.5593
UUUUUCUUUGG	chr17:57915602-57915855(+)$1	253	21	32	17.9152
UUUUUCUAUCU	chr14:77270090-77270374(-)$1	284	72	83	19.9491
UUUUUCCUUAU	chr6:117898486-117898745(-)$1	259	26	37	18.7627
UUUUUUUUUUU	chr1:153617423-153617730(+)$1	307	87	98	20.1186
UUUUUUAUUCU	chr1:160208402-160208651(-)$1	249	46	57	17.6610
UUUUUCCUUCC	chr2:63175281-63175540(+)$1	259	95	106	18.1694
CUUCUCUUUCU	chr7:100146324-100146580(+)$1	256	90	101	16.2203
AUUUUCUCUCU	chr18:56018101-56018358(+)$1	257	88	99	16.7288
UUGUUCUUUUU	chr3:156869573-156869829(-)$1	256	81	92	18.5932
UUUUUCCUUUU	chr6:131199243-131199504(-)$1	261	66	77	19.7796
UUUUUCUUCCU	chr11:95560839-95561094(+)$1	255	95	106	20.1186
UUUUGCUUUAU	chr2:85770672-85770919(+)$1	247	64	75	17.3220
UUCUUCUUCCU	chr19:42752983-42753240(-)$1	257	83	94	15.8813
uuuuuuuuuuu	chr12:102124186-102124440(+)$1	254	83	94	20.1186
UUUUUCCUUCA	chr17:74326042-74326295(-)$1	253	98	109	17.7457
UUGUUCUUUUU	chr12:64838729-64838984(+)$1	255	90	101	18.5932
UUUUUCUUUUU	chr13:100959334-100959578(+)$1	244	91	102	22.8305
UUUUGCUUCCU	chrX:128615017-128615260(-)$1	243	0	11	15.6271
AUUUUCUUUCA	chr2:61450283-61450535(-)$1	252	92	103	17.2372
UUGUUCUUUAU	chr5:134116718-134116967(+)$1	249	88	99	17.5762
UUUUUCCCUCU	chr11:46439456-46439728(-)$1	272	101	112	17.2372
CUUUUUUUUCU	chr10:103552522-103552766(-)$1	244	47	58	18.1694
uuuuuuuuuuu	chr20:57266354-57266594(+)$1	240	66	77	20.1186
uuuuucuuuuu	chr11:73429782-73430052(-)$1	270	57	68	22.8305
UUUUUCUUUCU	chr10:5762401-5762717(+)$1	316	294	305	24.2711
UUUUCCUUUCU	chr6:28879347-28879607(-)$1	260	94	105	19.6949
UUUUUCCUUUU	chr16:28841062-28841284(+)$1	222	50	61	19.7796
UUUUUCCUGCU	chr17:57915575-57915788(+)$1	213	19	30	16.8135
AUUUUCUUUCA	chr8:17742927-17743180(-)$1	253	233	244	17.2372
UUUUUCUUUUC	chr17:34161457-34161707(+)$1	250	90	101	19.7796

#otherMatches

#Struct PSSM
:::::::::GG	chr9:32985881-32986135(-)$1	254	67	78	20.1186
ee>>>>>>>>>	chr1:151196607-151196861(+)$1	254	95	106	18.5084
dddeeeee]a2	chr1:160206868-160207119(-)$1	251	79	90	19.7796
:::::::::ee	chr11:3765719-3766002(-)$1	283	98	109	21.2203
::::::=====	chr2:238485809-238486130(-)$1	321	87	98	18.5084
:IIIIIIIII}	chr1:155701622-155701892(+)$1	270	100	111	17.4067
::::::::::c	chr10:79799833-79800069(+)$1	236	95	106	18.1694
JJJJJJJJ{AK	chr15:63353727-63354019(+)$1	292	121	132	17.2372
dd[ggggggg$	chr14:35482901-35483162(+)$1	261	87	98	19.2711
++++++++fff	chr16:24788147-24788426(+)$1	279	14	25	17.2372
^^^^^^^ffff	chr13:39600375-39600634(-)$1	259	89	100	16.6440
d:iiiiiiiii	chr7:26237345-26237580(-)$1	235	77	88	18.5084
WWWWWWWWWWW	chr1:36411216-36411432(+)$1	216	51	62	18.5084
^^^^^^^^^^h	chr2:64143951-64144241(-)$1	290	83	94	17.8305
gg4444eeeee	chr16:58589662-58589924(-)$1	262	96	107	17.4915
::::FFFFFF{	chr14:94744789-94745063(+)$1	274	92	103	22.8305
h::::======	chr2:219613459-219613688(+)$1	229	32	43	21.6440
WWWWWWWWWWW	chr1:212141906-212142159(-)$1	253	91	102	20.1186
ddffffff!!c	chr17:27000282-27000538(+)$1	256	91	102	17.8305
::iiiiiiiii	chr8:42177005-42177280(+)$1	275	72	83	21.2203
:::::::::::	chr3:9475866-9476144(+)$1	278	7	18	20.0338
ggg22eeeee:	chr16:74943646-74943924(-)$1	278	254	265	16.0508
::::::fffff	chr16:56536214-56536480(-)$1	266	95	106	21.2203
WWWGGGGGGG{	chr1:70697451-70697681(+)$1	230	47	58	17.2372
???GGGGGGGY	chr16:47698670-47698937(+)$1	267	161	172	16.5593
DLLLEEEEEFF	chr17:38288177-38288442(+)$1	265	86	97	20.2881
::::::::===	chr5:32380114-32380387(-)$1	273	220	231	18.2542
ggggg:::fff	chr14:39746029-39746286(+)$1	257	90	101	18.4237
:::::::::dd	chr10:81053012-81053313(+)$1	301	83	94	21.5593
G{DDDD:::cc	chr17:57915602-57915855(+)$1	253	21	32	17.9152
f[ccc[eeeee	chr14:77270090-77270374(-)$1	284	72	83	19.9491
mmmmcccgggg	chr6:117898486-117898745(-)$1	259	26	37	18.7627
::::::::===	chr1:153617423-153617730(+)$1	307	87	98	20.1186
^^^^^^^^fff	chr1:160208402-160208651(-)$1	249	46	57	17.6610
d####eeeeem	chr2:63175281-63175540(+)$1	259	95	106	18.1694
:::::::::::	chr7:100146324-100146580(+)$1	256	90	101	16.2203
CCCKKDDDD{F	chr18:56018101-56018358(+)$1	257	88	99	16.7288
vveeeee::::	chr3:156869573-156869829(-)$1	256	81	92	18.5932
III{CCC::::	chr6:131199243-131199504(-)$1	261	66	77	19.7796
=====]fffff	chr11:95560839-95561094(+)$1	255	95	106	20.1186
LBB{EEEEE::	chr2:85770672-85770919(+)$1	247	64	75	17.3220
^^^^^^^^^^^	chr19:42752983-42753240(-)$1	257	83	94	15.8813
:::::::::::	chr12:102124186-102124440(+)$1	254	83	94	20.1186
:IIIIIIIII|	chr17:74326042-74326295(-)$1	253	98	109	17.7457
dddd22ccc33	chr12:64838729-64838984(+)$1	255	90	101	18.5932
:::::::::::	chr13:100959334-100959578(+)$1	244	91	102	22.8305
::::::::DDD	chrX:128615017-128615260(-)$1	243	0	11	15.6271
diiiiiiiii:	chr2:61450283-61450535(-)$1	252	92	103	17.2372
yyyyyyyyfff	chr5:134116718-134116967(+)$1	249	88	99	17.5762
^^^^^^^^^^^	chr11:46439456-46439728(-)$1	272	101	112	17.2372
:::::::::::	chr10:103552522-103552766(-)$1	244	47	58	18.1694
======:::::	chr20:57266354-57266594(+)$1	240	66	77	20.1186
::::::::::d	chr11:73429782-73430052(-)$1	270	57	68	22.8305
:::::::::::	chr10:5762401-5762717(+)$1	316	294	305	24.2711
2dddd]eeeee	chr6:28879347-28879607(-)$1	260	94	105	19.6949
0000dddd:::	chr16:28841062-28841284(+)$1	222	50	61	19.7796
EEEE{DDDDWW	chr17:57915575-57915788(+)$1	213	19	30	16.8135
doooooodddd	chr8:17742927-17743180(-)$1	253	233	244	17.2372
JJJJJJJLLLB	chr17:34161457-34161707(+)$1	250	90	101	19.7796

#DB
.........((	chr9:32985881-32986135(-)$1	1	67	78	20.1186
)).........	chr1:151196607-151196861(+)$1	1	95	106	18.5084
)))))))).).	chr1:160206868-160207119(-)$1	1	79	90	19.7796
.........((	chr11:3765719-3766002(-)$1	1	98	109	21.2203
......(((((	chr2:238485809-238486130(-)$1	1	87	98	18.5084
.))))))))).	chr1:155701622-155701892(+)$1	1	100	111	17.4067
..........(	chr10:79799833-79800069(+)$1	1	95	106	18.1694
((((((((.(.	chr15:63353727-63354019(+)$1	1	121	132	17.2372
((.(((((((.	chr14:35482901-35483162(+)$1	1	87	98	19.2711
........(((	chr16:24788147-24788426(+)$1	1	14	25	17.2372
.......))))	chr13:39600375-39600634(-)$1	1	89	100	16.6440
).(((((((((	chr7:26237345-26237580(-)$1	1	77	88	18.5084
...........	chr1:36411216-36411432(+)$1	1	51	62	18.5084
..........)	chr2:64143951-64144241(-)$1	1	83	94	17.8305
))....)))))	chr16:58589662-58589924(-)$1	1	96	107	17.4915
....((((((.	chr14:94744789-94745063(+)$1	1	92	103	22.8305
)....((((((	chr2:219613459-219613688(+)$1	1	32	43	21.6440
...........	chr1:212141906-212142159(-)$1	1	91	102	20.1186
((((((((..(	chr17:27000282-27000538(+)$1	1	91	102	17.8305
..(((((((((	chr8:42177005-42177280(+)$1	1	72	83	21.2203
...........	chr3:9475866-9476144(+)$1	1	7	18	20.0338
)))..))))).	chr16:74943646-74943924(-)$1	1	254	265	16.0508
......(((((	chr16:56536214-56536480(-)$1	1	95	106	21.2203
...(((((((.	chr1:70697451-70697681(+)$1	1	47	58	17.2372
...))))))).	chr16:47698670-47698937(+)$1	1	161	172	16.5593
(...(((((((	chr17:38288177-38288442(+)$1	1	86	97	20.2881
........(((	chr5:32380114-32380387(-)$1	1	220	231	18.2542
)))))...(((	chr14:39746029-39746286(+)$1	1	90	101	18.4237
.........((	chr10:81053012-81053313(+)$1	1	83	94	21.5593
(.((((...((	chr17:57915602-57915855(+)$1	1	21	32	17.9152
(.(((.(((((	chr14:77270090-77270374(-)$1	1	72	83	19.9491
....)))((((	chr6:117898486-117898745(-)$1	1	26	37	18.7627
........(((	chr1:153617423-153617730(+)$1	1	87	98	20.1186
........)))	chr1:160208402-160208651(-)$1	1	46	57	17.6610
(....(((((.	chr2:63175281-63175540(+)$1	1	95	106	18.1694
...........	chr7:100146324-100146580(+)$1	1	90	101	16.2203
(((..((((.(	chr18:56018101-56018358(+)$1	1	88	99	16.7288
..)))))....	chr3:156869573-156869829(-)$1	1	81	92	18.5932
(((.(((....	chr6:131199243-131199504(-)$1	1	66	77	19.7796
))))).)))))	chr11:95560839-95561094(+)$1	1	95	106	20.1186
.((.(((((..	chr2:85770672-85770919(+)$1	1	64	75	17.3220
...........	chr19:42752983-42753240(-)$1	1	83	94	15.8813
...........	chr12:102124186-102124440(+)$1	1	83	94	20.1186
.))))))))).	chr17:74326042-74326295(-)$1	1	98	109	17.7457
))))..)))..	chr12:64838729-64838984(+)$1	1	90	101	18.5932
...........	chr13:100959334-100959578(+)$1	1	91	102	22.8305
........(((	chrX:128615017-128615260(-)$1	1	0	11	15.6271
)))))))))).	chr2:61450283-61450535(-)$1	1	92	103	17.2372
........)))	chr5:134116718-134116967(+)$1	1	88	99	17.5762
...........	chr11:46439456-46439728(-)$1	1	101	112	17.2372
...........	chr10:103552522-103552766(-)$1	1	47	58	18.1694
)))))).....	chr20:57266354-57266594(+)$1	1	66	77	20.1186
..........(	chr11:73429782-73430052(-)$1	1	57	68	22.8305
...........	chr10:5762401-5762717(+)$1	1	294	305	24.2711
.)))).)))))	chr6:28879347-28879607(-)$1	1	94	105	19.6949
....))))...	chr16:28841062-28841284(+)$1	1	50	61	19.7796
((((.((((..	chr17:57915575-57915788(+)$1	1	19	30	16.8135
(......))))	chr8:17742927-17743180(-)$1	1	233	244	17.2372
(((((((...(	chr17:34161457-34161707(+)$1	1	90	101	19.7796

#PSSM
U : 0.69	C : 0.11	u : 0.10	A : 0.08	
U : 0.88	u : 0.10	A : 0.01	
U : 0.79	u : 0.10	C : 0.05	G : 0.05	
U : 0.86	u : 0.10	C : 0.03	
U : 0.83	u : 0.10	G : 0.03	A : 0.01	C : 0.01	
C : 0.72	U : 0.16	u : 0.05	c : 0.03	G : 0.01	
U : 0.71	C : 0.18	u : 0.08	A : 0.01	
U : 0.79	u : 0.08	C : 0.08	G : 0.01	A : 0.01	
U : 0.81	u : 0.08	C : 0.06	A : 0.01	G : 0.01	
C : 0.57	U : 0.20	u : 0.08	A : 0.08	G : 0.05	
U : 0.67	C : 0.15	u : 0.08	A : 0.06	G : 0.01	

#score	1112.5932203389816
#seq	59
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_CDS_m3_run2.nuc.txt

#NT
GGCGGGGG	chr7:128828802-128829124(+)$1	322	148	156	16.1818
GGUGGGAG	chr19:11546467-11546778(+)$1	311	77	85	16.1818
GGUGCGGG	chr21:46876419-46876690(+)$1	271	119	127	16.3636
GGUGCGGG	chr19:1012202-1012493(-)$1	291	104	112	16.3636
GGGGGGGG	chr17:7311490-7311793(+)$1	303	41	49	16.0909
GGAGGGGG	chr12:125270635-125270877(-)$1	242	212	220	16.0909
UGUGGGGG	chr19:1272216-1272475(+)$1	259	97	105	15.8181
GGUGGGGG	chr19:45991841-45992167(-)$1	326	317	325	20.2727
GGUGGGGG	chr9:139904715-139905014(-)$1	299	147	155	20.2727
GCUGGGGG	chr12:125270731-125270997(-)$1	266	144	152	15.8181
GGAGGGGG	chr19:13260782-13261055(-)$1	273	33	41	16.0909
GGGGGGGG	chr17:7311431-7311690(+)$1	259	100	108	16.0909
GGUUGGGG	chr9:35092272-35092526(-)$1	254	115	123	15.8181
GGUGAGGG	chr1:44820439-44820691(-)$1	252	181	189	16.4545
GGUAGGGG	chr7:44799722-44800023(+)$1	301	104	112	15.8181
GGUGGGGG	chr19:58991263-58991524(-)$1	261	235	243	20.2727
GGUGGGAG	chr1:155033657-155034045(+)$1	388	344	352	16.1818
CGUGGGGG	chr21:47565712-47565952(-)$1	240	151	159	15.8181
GGUGGGAG	chr4:6290546-6290816(+)$1	270	117	125	16.1818
GGUGGGGG	chr3:48689702-48689974(-)$1	272	104	112	20.2727
GGUGUGGG	chr5:176916984-176917244(-)$1	260	44	52	16.6363
GGUGGAGG	chr15:75650873-75651164(-)$1	291	146	154	16.0000
GGUGAGGG	chr8:145168988-145169317(+)$1	329	116	124	16.4545
GGUGGGGC	chr2:220412226-220412595(+)$1	369	194	202	15.6363
GGUGGAGG	chr15:75650787-75651060(-)$1	273	42	50	16.0000
GGUGUGGG	chrX:48814282-48814594(-)$1	312	128	136	16.6363
GGUGGGGC	chr1:16270411-16270680(-)$1	269	111	119	15.6363
GGUGGAGG	chr16:70288136-70288397(-)$1	261	117	125	16.0000
GGUAGGGG	chr20:35176475-35176758(-)$1	283	143	151	15.8181
UGUGGGGG	chr6:32157586-32157918(-)$1	332	34	42	15.8181
ggugaggg	chr4:52709643-52709970(+)$1	327	15	23	16.4545
GCUGGGGG	chr16:88712720-88713041(-)$1	321	127	135	15.8181
GGUGGGGG	chr8:145623242-145623511(-)$1	269	60	68	20.2727
GGUGGGGG	chr19:18548361-18548587(-)$1	226	178	186	20.2727
GGUGUGGG	chr19:58991518-58991783(-)$1	265	93	101	16.6363
GGUGGGGG	chr20:3146516-3146774(-)$1	258	101	109	20.2727
CGUGGGGG	chr21:47565675-47565906(-)$1	231	105	113	15.8181
GGUUGGGG	chr11:68213010-68213305(+)$1	295	112	120	15.8181
GGUGGGGG	chr19:1104600-1104870(+)$1	270	97	105	20.2727
GGUGUGGG	chr17:27064437-27064749(+)$1	312	131	139	16.6363
GGUGGGGG	chr12:1910114-1910357(-)$1	243	27	35	20.2727
GGUgggcg	chr19:5229208-5229544(-)$1	336	42	50	15.9090
GCUGGGGG	chr16:28847421-28847658(+)$1	237	90	98	15.8181
GGUGGCGG	chr14:92587830-92588087(-)$1	257	150	158	15.8181
GGUGGUGG	chr19:6746105-6746357(+)$1	252	128	136	15.8181
GGUGGGAG	chr9:139743746-139744009(+)$1	263	105	113	16.1818
GGUGGGGG	chr19:58991073-58991409(-)$1	336	120	128	20.2727
GGUGGGGG	chr19:14040358-14040655(+)$1	297	139	147	20.2727
gguggggg	chr17:7232436-7232707(-)$1	271	139	147	20.2727
GGCGGGGG	chr9:35092384-35092639(-)$1	255	108	116	16.1818
GGUGGGUG	chr20:60714666-60714934(-)$1	268	97	105	15.9090
GGUGGGGG	chr16:4744285-4744560(+)$1	275	135	143	20.2727
GGCGGGGG	chr13:111357955-111358243(-)$1	288	52	60	16.1818
GGUGUGGG	chr11:68660123-68660428(-)$1	305	139	147	16.6363

#otherMatches

#Struct PSSM
========	chr19:15511925-15512180(-)$1	255	115	123	20.2727
EDDDD{CC	chr7:128828802-128829124(+)$1	322	148	156	16.1818
eeeeoooo	chr19:11546467-11546778(+)$1	311	77	85	16.1818
EE}AYYCC	chr21:46876419-46876690(+)$1	271	119	127	16.3636
mmmfffff	chr19:1012202-1012493(-)$1	291	104	112	16.3636
========	chr17:7311490-7311793(+)$1	303	41	49	16.0909
GGGGGDDD	chr12:125270635-125270877(-)$1	242	212	220	16.0909
d::ggggg	chr19:1272216-1272475(+)$1	259	97	105	15.8181
BBFFFFFF	chr19:45991841-45992167(-)$1	326	317	325	20.2727
gggggggq	chr9:139904715-139905014(-)$1	299	147	155	20.2727
mmmmccc]	chr12:125270731-125270997(-)$1	266	144	152	15.8181
==pppppp	chr19:13260782-13261055(-)$1	273	33	41	16.0909
========	chr17:7311431-7311690(+)$1	259	100	108	16.0909
oobb]iii	chr9:35092272-35092526(-)$1	254	115	123	15.8181
IIIIIILL	chr1:44820439-44820691(-)$1	252	181	189	16.4545
fff22bb]	chr7:44799722-44800023(+)$1	301	104	112	15.8181
ccc]====	chr19:58991263-58991524(-)$1	261	235	243	20.2727
FF}CCC}C	chr1:155033657-155034045(+)$1	388	344	352	16.1818
ddddeeee	chr21:47565712-47565952(-)$1	240	151	159	15.8181
fff]a]a2	chr4:6290546-6290816(+)$1	270	117	125	16.1818
oooooddd	chr3:48689702-48689974(-)$1	272	104	112	20.2727
{FFFFFFD	chr5:176916984-176917244(-)$1	260	44	52	16.6363
DDDMMMMJ	chr15:75650873-75651164(-)$1	291	146	154	16.0000
ccc333cc	chr8:145168988-145169317(+)$1	329	116	124	16.4545
hhhhhhhh	chr2:220412226-220412595(+)$1	369	194	202	15.6363
DDDMMMMJ	chr15:75650787-75651060(-)$1	273	42	50	16.0000
dda]eeee	chrX:48814282-48814594(-)$1	312	128	136	16.6363
hhhhhhmm	chr1:16270411-16270680(-)$1	269	111	119	15.6363
==ffffff	chr16:70288136-70288397(-)$1	261	117	125	16.0000
ee]a]eee	chr20:35176475-35176758(-)$1	283	143	151	15.8181
LLLCCCLL	chr6:32157586-32157918(-)$1	332	34	42	15.8181
cccvvvvv	chr4:52709643-52709970(+)$1	327	15	23	16.4545
CCC{EEEE	chr16:88712720-88713041(-)$1	321	127	135	15.8181
JJJJJJJJ	chr8:145623242-145623511(-)$1	269	60	68	20.2727
bffffff]	chr19:18548361-18548587(-)$1	226	178	186	20.2727
""dddd[c	chr19:58991518-58991783(-)$1	265	93	101	16.6363
c]hhhhhh	chr20:3146516-3146774(-)$1	258	101	109	20.2727
fffff###	chr21:47565675-47565906(-)$1	231	105	113	15.8181
%%%%%ggg	chr11:68213010-68213305(+)$1	295	112	120	15.8181
eeffffff	chr19:1104600-1104870(+)$1	270	97	105	20.2727
]iiiiiii	chr17:27064437-27064749(+)$1	312	131	139	16.6363
II{DDDD{	chr12:1910114-1910357(-)$1	243	27	35	20.2727
========	chr19:5229208-5229544(-)$1	336	42	50	15.9090
[ccc[bb"	chr16:28847421-28847658(+)$1	237	90	98	15.8181
gggggggg	chr14:92587830-92588087(-)$1	257	150	158	15.8181
ee[bb[ee	chr19:6746105-6746357(+)$1	252	128	136	15.8181
]hhhhhhh	chr9:139743746-139744009(+)$1	263	105	113	16.1818
ccc]hhhh	chr19:58991073-58991409(-)$1	336	120	128	20.2727
YYFFFFFF	chr19:14040358-14040655(+)$1	297	139	147	20.2727
eeemmmme	chr17:7232436-7232707(-)$1	271	139	147	20.2727
ccc[eeee	chr9:35092384-35092639(-)$1	255	108	116	16.1818
=======m	chr20:60714666-60714934(-)$1	268	97	105	15.9090
qqqqqqqq	chr16:4744285-4744560(+)$1	275	135	143	20.2727
!!ccclll	chr13:111357955-111358243(-)$1	288	52	60	16.1818
GGGGKKEE	chr11:68660123-68660428(-)$1	305	139	147	16.6363

#DB
((((((((	chr19:15511925-15512180(-)$1	1	115	123	20.2727
(((((.((	chr7:128828802-128829124(+)$1	1	148	156	16.1818
((((....	chr19:11546467-11546778(+)$1	1	77	85	16.1818
)).)..))	chr21:46876419-46876690(+)$1	1	119	127	16.3636
...)))))	chr19:1012202-1012493(-)$1	1	104	112	16.3636
))))))))	chr17:7311490-7311793(+)$1	1	41	49	16.0909
))))))))	chr12:125270635-125270877(-)$1	1	212	220	16.0909
)..(((((	chr19:1272216-1272475(+)$1	1	97	105	15.8181
))))))))	chr19:45991841-45992167(-)$1	1	317	325	20.2727
(((((((.	chr9:139904715-139905014(-)$1	1	147	155	20.2727
....))).	chr12:125270731-125270997(-)$1	1	144	152	15.8181
((......	chr19:13260782-13261055(-)$1	1	33	41	16.0909
))))))))	chr17:7311431-7311690(+)$1	1	100	108	16.0909
..)).)))	chr9:35092272-35092526(-)$1	1	115	123	15.8181
((((((..	chr1:44820439-44820691(-)$1	1	181	189	16.4545
)))..)).	chr7:44799722-44800023(+)$1	1	104	112	15.8181
))).))))	chr19:58991263-58991524(-)$1	1	235	243	20.2727
)).))).)	chr1:155033657-155034045(+)$1	1	344	352	16.1818
))))))))	chr21:47565712-47565952(-)$1	1	151	159	15.8181
))).).).	chr4:6290546-6290816(+)$1	1	117	125	16.1818
.....)))	chr3:48689702-48689974(-)$1	1	104	112	20.2727
.(((((((	chr5:176916984-176917244(-)$1	1	44	52	16.6363
(((....(	chr15:75650873-75651164(-)$1	1	146	154	16.0000
)))...))	chr8:145168988-145169317(+)$1	1	116	124	16.4545
((((((((	chr2:220412226-220412595(+)$1	1	194	202	15.6363
(((....(	chr15:75650787-75651060(-)$1	1	42	50	16.0000
))).))))	chrX:48814282-48814594(-)$1	1	128	136	16.6363
((((((..	chr1:16270411-16270680(-)$1	1	111	119	15.6363
))((((((	chr16:70288136-70288397(-)$1	1	117	125	16.0000
)).).)))	chr20:35176475-35176758(-)$1	1	143	151	15.8181
...(((..	chr6:32157586-32157918(-)$1	1	34	42	15.8181
(((.....	chr4:52709643-52709970(+)$1	1	15	23	16.4545
(((.((((	chr16:88712720-88713041(-)$1	1	127	135	15.8181
((((((((	chr8:145623242-145623511(-)$1	1	60	68	20.2727
))))))).	chr19:18548361-18548587(-)$1	1	178	186	20.2727
..((((.(	chr19:58991518-58991783(-)$1	1	93	101	16.6363
).))))))	chr20:3146516-3146774(-)$1	1	101	109	20.2727
(((((...	chr21:47565675-47565906(-)$1	1	105	113	15.8181
.....(((	chr11:68213010-68213305(+)$1	1	112	120	15.8181
))))))))	chr19:1104600-1104870(+)$1	1	97	105	20.2727
.)))))))	chr17:27064437-27064749(+)$1	1	131	139	16.6363
((.((((.	chr12:1910114-1910357(-)$1	1	27	35	20.2727
((((((((	chr19:5229208-5229544(-)$1	1	42	50	15.9090
.(((.((.	chr16:28847421-28847658(+)$1	1	90	98	15.8181
))))))((	chr14:92587830-92588087(-)$1	1	150	158	15.8181
((.((.((	chr19:6746105-6746357(+)$1	1	128	136	15.8181
.)))))))	chr9:139743746-139744009(+)$1	1	105	113	16.1818
))).))))	chr19:58991073-58991409(-)$1	1	120	128	20.2727
..))))))	chr19:14040358-14040655(+)$1	1	139	147	20.2727
(((....)	chr17:7232436-7232707(-)$1	1	139	147	20.2727
(((.((((	chr9:35092384-35092639(-)$1	1	108	116	16.1818
(((((((.	chr20:60714666-60714934(-)$1	1	97	105	15.9090
........	chr16:4744285-4744560(+)$1	1	135	143	20.2727
..(((...	chr13:111357955-111358243(-)$1	1	52	60	16.1818
((((..((	chr11:68660123-68660428(-)$1	1	139	147	16.6363

#PSSM
G : 0.89	U : 0.03	C : 0.03	g : 0.03	
G : 0.90	C : 0.05	g : 0.03	
U : 0.83	C : 0.05	G : 0.03	A : 0.03	u : 0.03	
G : 0.87	g : 0.05	U : 0.03	A : 0.03	
G : 0.78	U : 0.09	C : 0.03	A : 0.03	g : 0.03	a : 0.01	
G : 0.85	A : 0.05	g : 0.05	C : 0.01	U : 0.01	
G : 0.85	A : 0.07	g : 0.03	c : 0.01	U : 0.01	
G : 0.90	g : 0.05	C : 0.03	

#score	943.4545454545455
#seq	55
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF821EXR_HNRNPUL1_transcript_m2_run1.nuc.txt

#NT
CUGGA	chr16:85647232-85647476(+)$1	244	127	132	15.0000
CUGGA	chr22:50011824-50012082(-)$1	258	39	44	15.0000
CUGGA	chr22:49961775-49962082(-)$1	307	286	291	15.0000
CUGGA	chr17:16342999-16343322(+)$1	323	174	179	15.0000
CUGGA	chr13:92001549-92001793(+)$1	244	104	109	15.0000
CUGGA	chr7:98479297-98479517(+)$1	220	46	51	15.0000
CUGGA	chr5:34192095-34192338(-)$1	243	56	61	15.0000
CUGGA	chr22:50021847-50022131(-)$1	284	30	35	15.0000
CUGGA	chr7:45144122-45144427(-)$1	305	32	37	15.0000
CUGGA	chr16:89033145-89033382(-)$1	237	210	215	15.0000
CUGGA	chr19:18534151-18534420(+)$1	269	3	8	15.0000
CUGGA	chr22:50018557-50018800(-)$1	243	106	111	15.0000
CUGGA	chr22:49995353-49995628(-)$1	275	166	171	15.0000
CUGGA	chr18:47340345-47340638(+)$1	293	66	71	15.0000
CUGGA	chr22:49957865-49958133(-)$1	268	78	83	15.0000
CUGGA	chr7:98479333-98479539(+)$1	206	10	15	15.0000
CUGGA	chr19:1411020-1411292(+)$1	272	238	243	15.0000
CUGGA	chr2:97533803-97534041(-)$1	238	124	129	15.0000
CUGGA	chr11:65210826-65211045(+)$1	219	29	34	15.0000
cugga	chr22:50013893-50014165(-)$1	272	265	270	15.0000
CUGGA	chr19:1409153-1409409(+)$1	256	143	148	15.0000
CUGGA	chr7:98479339-98479543(+)$1	204	4	9	15.0000
CUGGA	chr3:187459396-187459664(-)$1	268	55	60	15.0000
CUGGA	chr18:47017936-47018172(-)$1	236	27	32	15.0000
CUGGA	chr17:27047483-27047735(+)$1	252	44	49	15.0000
CUGGA	chr16:31198156-31198455(+)$1	299	171	176	15.0000
CUGGA	chr22:50037389-50037659(-)$1	270	59	64	15.0000
CUGGA	chr22:50010501-50010784(-)$1	283	39	44	15.0000
CUGGA	chr19:3698783-3699034(-)$1	251	116	121	15.0000
CUGGA	chr2:203141070-203141335(+)$1	265	189	194	15.0000
cugga	chr22:50013828-50014093(-)$1	265	193	198	15.0000
CUGGA	chr22:49969324-49969581(-)$1	257	77	82	15.0000
CUGGA	chr22:50034613-50034884(-)$1	271	102	107	15.0000
CUGGA	chr7:98479281-98479497(+)$1	216	62	67	15.0000
CUGGA	chr19:1409991-1410222(+)$1	231	80	85	15.0000
CUGGA	chr4:1237435-1237673(-)$1	238	76	81	15.0000
CUGGA	chr16:31198683-31198931(+)$1	248	192	197	15.0000
CUGGA	chr19:34873561-34873802(+)$1	241	148	153	15.0000
CUGGA	chr7:98479343-98479556(+)$1	213	0	5	15.0000
CUGGA	chr16:31198485-31198734(+)$1	249	93	98	15.0000
cugga	chr6:26988114-26988325(+)$1	211	96	101	15.0000
CUGGA	chr7:98479317-98479523(+)$1	206	26	31	15.0000
CUGGA	chr22:49980951-49981248(-)$1	297	82	87	15.0000
CUGGA	chr11:2713298-2713564(-)$1	266	257	262	15.0000
cugga	chr9:139559440-139559736(+)$1	296	34	39	15.0000
CUGGA	chr12:6619568-6619780(+)$1	212	9	14	15.0000

#otherMatches

#Struct PSSM
ggggg	chr7:45144295-45144540(-)$1	245	145	150	15.0000
eee[d	chr16:85647232-85647476(+)$1	244	127	132	15.0000
hpppp	chr22:50011824-50012082(-)$1	258	39	44	15.0000
ccqqq	chr22:49961775-49962082(-)$1	307	286	291	15.0000
IIIII	chr17:16342999-16343322(+)$1	323	174	179	15.0000
ppbbf	chr13:92001549-92001793(+)$1	244	104	109	15.0000
FFF::	chr7:98479297-98479517(+)$1	220	46	51	15.0000
===[b	chr5:34192095-34192338(-)$1	243	56	61	15.0000
dd[cc	chr22:50021847-50022131(-)$1	284	30	35	15.0000
DDKKE	chr7:45144122-45144427(-)$1	305	32	37	15.0000
2bb]b	chr16:89033145-89033382(-)$1	237	210	215	15.0000
FFFFF	chr19:18534151-18534420(+)$1	269	3	8	15.0000
ccc22	chr22:50018557-50018800(-)$1	243	106	111	15.0000
dddd:	chr22:49995353-49995628(-)$1	275	166	171	15.0000
gg333	chr18:47340345-47340638(+)$1	293	66	71	15.0000
ffff"	chr22:49957865-49958133(-)$1	268	78	83	15.0000
LDDDD	chr7:98479333-98479539(+)$1	206	10	15	15.0000
JJJJJ	chr19:1411020-1411292(+)$1	272	238	243	15.0000
hhhhh	chr2:97533803-97534041(-)$1	238	124	129	15.0000
KKEEE	chr11:65210826-65211045(+)$1	219	29	34	15.0000
II:::	chr22:50013893-50014165(-)$1	272	265	270	15.0000
DDDYY	chr19:1409153-1409409(+)$1	256	143	148	15.0000
DDCCC	chr7:98479339-98479543(+)$1	204	4	9	15.0000
FFFFF	chr3:187459396-187459664(-)$1	268	55	60	15.0000
CCLLL	chr18:47017936-47018172(-)$1	236	27	32	15.0000
eeeee	chr17:27047483-27047735(+)$1	252	44	49	15.0000
hhhh[	chr16:31198156-31198455(+)$1	299	171	176	15.0000
fff!!	chr22:50037389-50037659(-)$1	270	59	64	15.0000
gg]a:	chr22:50010501-50010784(-)$1	283	39	44	15.0000
d[ccc	chr19:3698783-3699034(-)$1	251	116	121	15.0000
BB}FF	chr2:203141070-203141335(+)$1	265	189	194	15.0000
II}AZ	chr22:50013828-50014093(-)$1	265	193	198	15.0000
cc$$$	chr22:49969324-49969581(-)$1	257	77	82	15.0000
GGGGf	chr22:50034613-50034884(-)$1	271	102	107	15.0000
FFF::	chr7:98479281-98479497(+)$1	216	62	67	15.0000
fffff	chr19:1409991-1410222(+)$1	231	80	85	15.0000
dpppp	chr4:1237435-1237673(-)$1	238	76	81	15.0000
FFFF~	chr16:31198683-31198931(+)$1	248	192	197	15.0000
cccmm	chr19:34873561-34873802(+)$1	241	148	153	15.0000
:cccm	chr7:98479343-98479556(+)$1	213	0	5	15.0000
d]ccc	chr16:31198485-31198734(+)$1	249	93	98	15.0000
nnncc	chr6:26988114-26988325(+)$1	211	96	101	15.0000
FFF::	chr7:98479317-98479523(+)$1	206	26	31	15.0000
f]bb2	chr22:49980951-49981248(-)$1	297	82	87	15.0000
ccc::	chr11:2713298-2713564(-)$1	266	257	262	15.0000
ddddv	chr9:139559440-139559736(+)$1	296	34	39	15.0000
===[b	chr12:6619568-6619780(+)$1	212	9	14	15.0000

#DB
)))))	chr7:45144295-45144540(-)$1	1	145	150	15.0000
(((.(	chr16:85647232-85647476(+)$1	1	127	132	15.0000
(....	chr22:50011824-50012082(-)$1	1	39	44	15.0000
((...	chr22:49961775-49962082(-)$1	1	286	291	15.0000
(((((	chr17:16342999-16343322(+)$1	1	174	179	15.0000
..))(	chr13:92001549-92001793(+)$1	1	104	109	15.0000
(((..	chr7:98479297-98479517(+)$1	1	46	51	15.0000
(((.(	chr5:34192095-34192338(-)$1	1	56	61	15.0000
((.((	chr22:50021847-50022131(-)$1	1	30	35	15.0000
((..(	chr7:45144122-45144427(-)$1	1	32	37	15.0000
.)).)	chr16:89033145-89033382(-)$1	1	210	215	15.0000
(((((	chr19:18534151-18534420(+)$1	1	3	8	15.0000
)))..	chr22:50018557-50018800(-)$1	1	106	111	15.0000
)))).	chr22:49995353-49995628(-)$1	1	166	171	15.0000
))...	chr18:47340345-47340638(+)$1	1	66	71	15.0000
((((.	chr22:49957865-49958133(-)$1	1	78	83	15.0000
.((((	chr7:98479333-98479539(+)$1	1	10	15	15.0000
)))))	chr19:1411020-1411292(+)$1	1	238	243	15.0000
(((((	chr2:97533803-97534041(-)$1	1	124	129	15.0000
..(((	chr11:65210826-65211045(+)$1	1	29	34	15.0000
))...	chr22:50013893-50014165(-)$1	1	265	270	15.0000
)))..	chr19:1409153-1409409(+)$1	1	143	148	15.0000
(((((	chr7:98479339-98479543(+)$1	1	4	9	15.0000
(((((	chr3:187459396-187459664(-)$1	1	55	60	15.0000
((...	chr18:47017936-47018172(-)$1	1	27	32	15.0000
)))))	chr17:27047483-27047735(+)$1	1	44	49	15.0000
((((.	chr16:31198156-31198455(+)$1	1	171	176	15.0000
(((..	chr22:50037389-50037659(-)$1	1	59	64	15.0000
)).).	chr22:50010501-50010784(-)$1	1	39	44	15.0000
(.(((	chr19:3698783-3699034(-)$1	1	116	121	15.0000
)).))	chr2:203141070-203141335(+)$1	1	189	194	15.0000
)).).	chr22:50013828-50014093(-)$1	1	193	198	15.0000
((...	chr22:49969324-49969581(-)$1	1	77	82	15.0000
(((((	chr22:50034613-50034884(-)$1	1	102	107	15.0000
(((..	chr7:98479281-98479497(+)$1	1	62	67	15.0000
)))))	chr19:1409991-1410222(+)$1	1	80	85	15.0000
(....	chr4:1237435-1237673(-)$1	1	76	81	15.0000
)))).	chr16:31198683-31198931(+)$1	1	192	197	15.0000
(((..	chr19:34873561-34873802(+)$1	1	148	153	15.0000
.(((.	chr7:98479343-98479556(+)$1	1	0	5	15.0000
).)))	chr16:31198485-31198734(+)$1	1	93	98	15.0000
...))	chr6:26988114-26988325(+)$1	1	96	101	15.0000
(((..	chr7:98479317-98479523(+)$1	1	26	31	15.0000
).)).	chr22:49980951-49981248(-)$1	1	82	87	15.0000
)))..	chr11:2713298-2713564(-)$1	1	257	262	15.0000
((((.	chr9:139559440-139559736(+)$1	1	34	39	15.0000
(((.(	chr12:6619568-6619780(+)$1	1	9	14	15.0000

#PSSM
C : 0.91	c : 0.08	
U : 0.91	u : 0.08	
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	
A : 0.91	a : 0.08	

#score	705.0000000000001
#seq	47
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_transcript_m3_run2.nuc.txt

#NT
CCU	chr14:23495328-23495570(-)$1	242	31	34	8.9999
CCU	chr9:116831920-116832125(-)$1	205	51	54	8.9999
CCU	chr3:195794802-195795051(-)$1	249	185	188	8.9999
CCU	chr1:990218-990458(+)$1	240	27	30	8.9999
CCU	chr2:47136164-47136407(-)$1	243	31	34	8.9999
CCU	chr11:118917173-118917408(-)$1	235	50	53	8.9999
CCU	chr1:120277170-120277450(+)$1	280	60	63	8.9999
CCU	chr1:116931201-116931447(+)$1	246	9	12	8.9999
CCU	chr6:27860785-27861031(-)$1	246	52	55	8.9999
CCU	chr1:182354917-182355122(-)$1	205	29	32	8.9999
CCU	chr3:133524596-133524923(+)$1	327	37	40	8.9999
CCU	chr11:62407033-62407276(-)$1	243	8	11	8.9999
CCU	chr14:95078666-95078884(+)$1	218	40	43	8.9999
CCU	chr16:28857152-28857383(-)$1	231	197	200	8.9999
CCU	chr12:110765520-110765797(+)$1	277	1	4	8.9999
CCU	chr14:24569271-24569521(+)$1	250	105	108	8.9999
CCU	chr20:2443666-2443914(-)$1	248	33	36	8.9999
CCU	chr12:98991595-98991872(+)$1	277	136	139	8.9999
CCU	chr10:131934600-131934873(+)$1	273	263	266	8.9999
CCU	chr4:74280709-74280921(+)$1	212	70	73	8.9999
CCU	chr1:1371049-1371302(+)$1	253	15	18	8.9999
CCU	chr9:117085968-117086186(+)$1	218	5	8	8.9999
CCU	chr19:58862885-58863153(-)$1	268	7	10	8.9999
CCU	chr8:22273483-22273727(+)$1	244	79	82	8.9999
CCU	chr17:79219721-79219960(-)$1	239	46	49	8.9999
CCU	chr1:43393235-43393471(-)$1	236	2	5	8.9999
CCU	chr16:27560973-27561288(-)$1	315	26	29	8.9999
CCU	chr14:93198968-93199213(-)$1	245	44	47	8.9999
CCU	chr10:73579374-73579673(-)$1	299	66	69	8.9999
CCU	chr3:133482977-133483219(+)$1	242	117	120	8.9999
CCU	chr7:103214451-103214691(-)$1	240	19	22	8.9999
CCU	chr12:49521971-49522206(-)$1	235	57	60	8.9999
CCU	chr1:113460318-113460567(-)$1	249	2	5	8.9999
CCU	chr19:6686125-6686377(-)$1	252	99	102	8.9999
CCU	chr6:29798229-29798449(+)$1	220	41	44	8.9999
CCU	chr2:63822464-63822754(+)$1	290	56	59	8.9999
CCU	chr20:33867662-33867905(-)$1	243	135	138	8.9999
CCU	chr19:59060162-59060374(+)$1	212	36	39	8.9999
CCU	chr2:216269204-216269434(-)$1	230	51	54	8.9999
CCU	chrX:48693720-48693968(-)$1	248	81	84	8.9999
CCU	chr19:18684391-18684615(+)$1	224	15	18	8.9999
CCU	chr8:57906147-57906401(-)$1	254	28	31	8.9999
CCU	chr11:66114709-66114960(-)$1	251	30	33	8.9999
CCU	chr4:74318017-74318226(+)$1	209	154	157	8.9999
CCU	chr11:118921674-118921929(-)$1	255	16	19	8.9999
CCU	chr17:80193932-80194208(+)$1	276	55	58	8.9999
CCU	chr20:30156841-30157098(+)$1	257	33	36	8.9999
CCU	chr6:160490815-160491071(+)$1	256	16	19	8.9999
CCU	chr3:186338437-186338672(+)$1	235	33	36	8.9999
CCU	chr1:154192821-154193092(-)$1	271	42	45	8.9999
CCU	chr17:7080202-7080458(-)$1	256	54	57	8.9999
CCU	chr17:1670125-1670382(+)$1	257	87	90	8.9999
CCU	chr13:48827842-48828128(+)$1	286	40	43	8.9999
CCU	chr5:139028000-139028260(+)$1	260	42	45	8.9999
CCU	chr22:36696095-36696398(-)$1	303	12	15	8.9999
CCU	chr14:94849353-94849562(-)$1	209	14	17	8.9999
CCU	chr7:94293255-94293484(+)$1	229	38	41	8.9999
CCU	chr6:31323913-31324230(-)$1	317	21	24	8.9999
CCU	chr5:149786343-149786622(-)$1	279	4	7	8.9999
CCU	chr11:61071357-61071608(-)$1	251	69	72	8.9999
CCU	chr19:3979850-3980121(-)$1	271	23	26	8.9999
CCU	chr7:103180585-103180825(-)$1	240	16	19	8.9999
CCU	chr12:3387484-3387829(+)$1	345	30	33	8.9999
CCU	chr19:39196653-39196871(+)$1	218	33	36	8.9999
CCU	chr12:110872819-110873088(-)$1	269	117	120	8.9999
CCU	chr4:155487016-155487252(+)$1	236	2	5	8.9999
CCU	chr2:128186018-128186277(+)$1	259	29	32	8.9999
CCU	chr16:57318242-57318521(-)$1	279	111	114	8.9999
CCU	chr17:57742089-57742343(+)$1	254	160	163	8.9999
CCU	chr6:26189081-26189321(-)$1	240	127	130	8.9999
CCU	chr6:53213519-53213811(-)$1	292	58	61	8.9999
CCU	chrX:77378298-77378530(+)$1	232	119	122	8.9999
CCU	chr17:37071244-37071500(+)$1	256	29	32	8.9999
CCU	chr11:57564061-57564317(+)$1	256	14	17	8.9999
CCU	chr16:5121755-5122067(+)$1	312	10	13	8.9999
CCU	chr2:216285420-216285624(-)$1	204	36	39	8.9999
CCU	chr12:49524986-49525261(-)$1	275	22	25	8.9999
CCU	chrX:153581436-153581654(-)$1	218	32	35	8.9999
CCU	chr20:17608173-17608399(-)$1	226	23	26	8.9999
CCU	chr19:1244213-1244481(+)$1	268	201	204	8.9999
CCU	chr6:26123686-26123951(-)$1	265	58	61	8.9999
CCU	chr10:73610838-73611062(-)$1	224	92	95	8.9999
CCU	chr2:216269078-216269283(-)$1	205	14	17	8.9999
CCU	chr8:27456028-27456252(-)$1	224	13	16	8.9999
CCU	chr20:30102322-30102572(+)$1	250	148	151	8.9999
CCU	chr17:79801825-79802068(-)$1	243	67	70	8.9999
CCU	chr4:17585005-17585310(+)$1	305	32	35	8.9999
CCU	chr19:52716172-52716442(+)$1	270	109	112	8.9999
CCU	chr2:220408147-220408412(-)$1	265	56	59	8.9999
CCU	chr2:219677579-219677832(+)$1	253	11	14	8.9999
ccu	chr1:19561523-19561851(-)$1	328	20	23	8.9999
CCU	chr11:118922430-118922661(-)$1	231	78	81	8.9999
CCU	chr6:31919717-31919938(+)$1	221	26	29	8.9999

#otherMatches

#Struct PSSM
::g	chr1:2160044-2160333(+)$1	289	235	238	8.9999
ccc	chr14:23495328-23495570(-)$1	242	31	34	8.9999
::e	chr9:116831920-116832125(-)$1	205	51	54	8.9999
cc!	chr3:195794802-195795051(-)$1	249	185	188	8.9999
ggg	chr1:990218-990458(+)$1	240	27	30	8.9999
ddd	chr2:47136164-47136407(-)$1	243	31	34	8.9999
FFF	chr11:118917173-118917408(-)$1	235	50	53	8.9999
GGG	chr1:120277170-120277450(+)$1	280	60	63	8.9999
dd!	chr1:116931201-116931447(+)$1	246	9	12	8.9999
eee	chr6:27860785-27861031(-)$1	246	52	55	8.9999
ggg	chr1:182354917-182355122(-)$1	205	29	32	8.9999
mmm	chr3:133524596-133524923(+)$1	327	37	40	8.9999
:::	chr11:62407033-62407276(-)$1	243	8	11	8.9999
EEE	chr14:95078666-95078884(+)$1	218	40	43	8.9999
BBC	chr16:28857152-28857383(-)$1	231	197	200	8.9999
:::	chr12:110765520-110765797(+)$1	277	1	4	8.9999
::J	chr14:24569271-24569521(+)$1	250	105	108	8.9999
KEE	chr20:2443666-2443914(-)$1	248	33	36	8.9999
ccg	chr12:98991595-98991872(+)$1	277	136	139	8.9999
bff	chr10:131934600-131934873(+)$1	273	263	266	8.9999
hhh	chr4:74280709-74280921(+)$1	212	70	73	8.9999
f!!	chr1:1371049-1371302(+)$1	253	15	18	8.9999
DD:	chr9:117085968-117086186(+)$1	218	5	8	8.9999
III	chr19:58862885-58863153(-)$1	268	7	10	8.9999
hhh	chr8:22273483-22273727(+)$1	244	79	82	8.9999
fff	chr17:79219721-79219960(-)$1	239	46	49	8.9999
:EE	chr1:43393235-43393471(-)$1	236	2	5	8.9999
cll	chr16:27560973-27561288(-)$1	315	26	29	8.9999
EEE	chr14:93198968-93199213(-)$1	245	44	47	8.9999
DDD	chr10:73579374-73579673(-)$1	299	66	69	8.9999
ddo	chr3:133482977-133483219(+)$1	242	117	120	8.9999
f""	chr7:103214451-103214691(-)$1	240	19	22	8.9999
ccc	chr12:49521971-49522206(-)$1	235	57	60	8.9999
:::	chr1:113460318-113460567(-)$1	249	2	5	8.9999
fff	chr19:6686125-6686377(-)$1	252	99	102	8.9999
DD{	chr6:29798229-29798449(+)$1	220	41	44	8.9999
EEE	chr2:63822464-63822754(+)$1	290	56	59	8.9999
iii	chr20:33867662-33867905(-)$1	243	135	138	8.9999
GGG	chr19:59060162-59060374(+)$1	212	36	39	8.9999
+++	chr2:216269204-216269434(-)$1	230	51	54	8.9999
dbb	chrX:48693720-48693968(-)$1	248	81	84	8.9999
ooo	chr19:18684391-18684615(+)$1	224	15	18	8.9999
EEE	chr8:57906147-57906401(-)$1	254	28	31	8.9999
ppp	chr11:66114709-66114960(-)$1	251	30	33	8.9999
fff	chr4:74318017-74318226(+)$1	209	154	157	8.9999
FFF	chr11:118921674-118921929(-)$1	255	16	19	8.9999
(((	chr17:80193932-80194208(+)$1	276	55	58	8.9999
ddd	chr20:30156841-30157098(+)$1	257	33	36	8.9999
EE{	chr6:160490815-160491071(+)$1	256	16	19	8.9999
]dd	chr3:186338437-186338672(+)$1	235	33	36	8.9999
fff	chr1:154192821-154193092(-)$1	271	42	45	8.9999
EEE	chr17:7080202-7080458(-)$1	256	54	57	8.9999
eee	chr17:1670125-1670382(+)$1	257	87	90	8.9999
$$b	chr13:48827842-48828128(+)$1	286	40	43	8.9999
:::	chr5:139028000-139028260(+)$1	260	42	45	8.9999
EEE	chr22:36696095-36696398(-)$1	303	12	15	8.9999
NNN	chr14:94849353-94849562(-)$1	209	14	17	8.9999
:::	chr7:94293255-94293484(+)$1	229	38	41	8.9999
HHH	chr6:31323913-31324230(-)$1	317	21	24	8.9999
FFF	chr5:149786343-149786622(-)$1	279	4	7	8.9999
===	chr11:61071357-61071608(-)$1	251	69	72	8.9999
MMM	chr19:3979850-3980121(-)$1	271	23	26	8.9999
DD:	chr7:103180585-103180825(-)$1	240	16	19	8.9999
ggg	chr12:3387484-3387829(+)$1	345	30	33	8.9999
i::	chr19:39196653-39196871(+)$1	218	33	36	8.9999
b]i	chr12:110872819-110873088(-)$1	269	117	120	8.9999
ggg	chr4:155487016-155487252(+)$1	236	2	5	8.9999
NNN	chr2:128186018-128186277(+)$1	259	29	32	8.9999
dd[	chr16:57318242-57318521(-)$1	279	111	114	8.9999
oae	chr17:57742089-57742343(+)$1	254	160	163	8.9999
ggc	chr6:26189081-26189321(-)$1	240	127	130	8.9999
e::	chr6:53213519-53213811(-)$1	292	58	61	8.9999
hhh	chrX:77378298-77378530(+)$1	232	119	122	8.9999
iii	chr17:37071244-37071500(+)$1	256	29	32	8.9999
fll	chr11:57564061-57564317(+)$1	256	14	17	8.9999
III	chr16:5121755-5122067(+)$1	312	10	13	8.9999
h::	chr2:216285420-216285624(-)$1	204	36	39	8.9999
nnn	chr12:49524986-49525261(-)$1	275	22	25	8.9999
b!!	chrX:153581436-153581654(-)$1	218	32	35	8.9999
ppe	chr20:17608173-17608399(-)$1	226	23	26	8.9999
d]d	chr19:1244213-1244481(+)$1	268	201	204	8.9999
eee	chr6:26123686-26123951(-)$1	265	58	61	8.9999
d]c	chr10:73610838-73611062(-)$1	224	92	95	8.9999
e$$	chr2:216269078-216269283(-)$1	205	14	17	8.9999
:::	chr8:27456028-27456252(-)$1	224	13	16	8.9999
eee	chr20:30102322-30102572(+)$1	250	148	151	8.9999
4ee	chr17:79801825-79802068(-)$1	243	67	70	8.9999
EEE	chr4:17585005-17585310(+)$1	305	32	35	8.9999
MME	chr19:52716172-52716442(+)$1	270	109	112	8.9999
fff	chr2:220408147-220408412(-)$1	265	56	59	8.9999
eoo	chr2:219677579-219677832(+)$1	253	11	14	8.9999
{HH	chr1:19561523-19561851(-)$1	328	20	23	8.9999
cee	chr11:118922430-118922661(-)$1	231	78	81	8.9999
:hh	chr6:31919717-31919938(+)$1	221	26	29	8.9999

#DB
..(	chr1:2160044-2160333(+)$1	1	235	238	8.9999
)))	chr14:23495328-23495570(-)$1	1	31	34	8.9999
..(	chr9:116831920-116832125(-)$1	1	51	54	8.9999
((.	chr3:195794802-195795051(-)$1	1	185	188	8.9999
)))	chr1:990218-990458(+)$1	1	27	30	8.9999
)))	chr2:47136164-47136407(-)$1	1	31	34	8.9999
(((	chr11:118917173-118917408(-)$1	1	50	53	8.9999
(((	chr1:120277170-120277450(+)$1	1	60	63	8.9999
((.	chr1:116931201-116931447(+)$1	1	9	12	8.9999
(((	chr6:27860785-27861031(-)$1	1	52	55	8.9999
)))	chr1:182354917-182355122(-)$1	1	29	32	8.9999
...	chr3:133524596-133524923(+)$1	1	37	40	8.9999
...	chr11:62407033-62407276(-)$1	1	8	11	8.9999
(((	chr14:95078666-95078884(+)$1	1	40	43	8.9999
)))	chr16:28857152-28857383(-)$1	1	197	200	8.9999
...	chr12:110765520-110765797(+)$1	1	1	4	8.9999
..)	chr14:24569271-24569521(+)$1	1	105	108	8.9999
.((	chr20:2443666-2443914(-)$1	1	33	36	8.9999
)))	chr12:98991595-98991872(+)$1	1	136	139	8.9999
)))	chr10:131934600-131934873(+)$1	1	263	266	8.9999
)))	chr4:74280709-74280921(+)$1	1	70	73	8.9999
(..	chr1:1371049-1371302(+)$1	1	15	18	8.9999
((.	chr9:117085968-117086186(+)$1	1	5	8	8.9999
(((	chr19:58862885-58863153(-)$1	1	7	10	8.9999
(((	chr8:22273483-22273727(+)$1	1	79	82	8.9999
(((	chr17:79219721-79219960(-)$1	1	46	49	8.9999
.((	chr1:43393235-43393471(-)$1	1	2	5	8.9999
(..	chr16:27560973-27561288(-)$1	1	26	29	8.9999
(((	chr14:93198968-93199213(-)$1	1	44	47	8.9999
(((	chr10:73579374-73579673(-)$1	1	66	69	8.9999
((.	chr3:133482977-133483219(+)$1	1	117	120	8.9999
(..	chr7:103214451-103214691(-)$1	1	19	22	8.9999
)))	chr12:49521971-49522206(-)$1	1	57	60	8.9999
...	chr1:113460318-113460567(-)$1	1	2	5	8.9999
)))	chr19:6686125-6686377(-)$1	1	99	102	8.9999
((.	chr6:29798229-29798449(+)$1	1	41	44	8.9999
(((	chr2:63822464-63822754(+)$1	1	56	59	8.9999
)))	chr20:33867662-33867905(-)$1	1	135	138	8.9999
(((	chr19:59060162-59060374(+)$1	1	36	39	8.9999
...	chr2:216269204-216269434(-)$1	1	51	54	8.9999
(((	chrX:48693720-48693968(-)$1	1	81	84	8.9999
...	chr19:18684391-18684615(+)$1	1	15	18	8.9999
(((	chr8:57906147-57906401(-)$1	1	28	31	8.9999
...	chr11:66114709-66114960(-)$1	1	30	33	8.9999
)))	chr4:74318017-74318226(+)$1	1	154	157	8.9999
(((	chr11:118921674-118921929(-)$1	1	16	19	8.9999
...	chr17:80193932-80194208(+)$1	1	55	58	8.9999
)))	chr20:30156841-30157098(+)$1	1	33	36	8.9999
((.	chr6:160490815-160491071(+)$1	1	16	19	8.9999
.))	chr3:186338437-186338672(+)$1	1	33	36	8.9999
)))	chr1:154192821-154193092(-)$1	1	42	45	8.9999
(((	chr17:7080202-7080458(-)$1	1	54	57	8.9999
)))	chr17:1670125-1670382(+)$1	1	87	90	8.9999
..(	chr13:48827842-48828128(+)$1	1	40	43	8.9999
...	chr5:139028000-139028260(+)$1	1	42	45	8.9999
(((	chr22:36696095-36696398(-)$1	1	12	15	8.9999
...	chr14:94849353-94849562(-)$1	1	14	17	8.9999
...	chr7:94293255-94293484(+)$1	1	38	41	8.9999
(((	chr6:31323913-31324230(-)$1	1	21	24	8.9999
(((	chr5:149786343-149786622(-)$1	1	4	7	8.9999
)))	chr11:61071357-61071608(-)$1	1	69	72	8.9999
...	chr19:3979850-3980121(-)$1	1	23	26	8.9999
((.	chr7:103180585-103180825(-)$1	1	16	19	8.9999
(((	chr12:3387484-3387829(+)$1	1	30	33	8.9999
)..	chr19:39196653-39196871(+)$1	1	33	36	8.9999
).)	chr12:110872819-110873088(-)$1	1	117	120	8.9999
(((	chr4:155487016-155487252(+)$1	1	2	5	8.9999
...	chr2:128186018-128186277(+)$1	1	29	32	8.9999
((.	chr16:57318242-57318521(-)$1	1	111	114	8.9999
.))	chr17:57742089-57742343(+)$1	1	160	163	8.9999
(((	chr6:26189081-26189321(-)$1	1	127	130	8.9999
)..	chr6:53213519-53213811(-)$1	1	58	61	8.9999
(((	chrX:77378298-77378530(+)$1	1	119	122	8.9999
(((	chr17:37071244-37071500(+)$1	1	29	32	8.9999
(..	chr11:57564061-57564317(+)$1	1	14	17	8.9999
(((	chr16:5121755-5122067(+)$1	1	10	13	8.9999
)..	chr2:216285420-216285624(-)$1	1	36	39	8.9999
...	chr12:49524986-49525261(-)$1	1	22	25	8.9999
(..	chrX:153581436-153581654(-)$1	1	32	35	8.9999
..)	chr20:17608173-17608399(-)$1	1	23	26	8.9999
).)	chr19:1244213-1244481(+)$1	1	201	204	8.9999
)))	chr6:26123686-26123951(-)$1	1	58	61	8.9999
).)	chr10:73610838-73611062(-)$1	1	92	95	8.9999
(..	chr2:216269078-216269283(-)$1	1	14	17	8.9999
...	chr8:27456028-27456252(-)$1	1	13	16	8.9999
)))	chr20:30102322-30102572(+)$1	1	148	151	8.9999
.))	chr17:79801825-79802068(-)$1	1	67	70	8.9999
(((	chr4:17585005-17585310(+)$1	1	32	35	8.9999
..(	chr19:52716172-52716442(+)$1	1	109	112	8.9999
)))	chr2:220408147-220408412(-)$1	1	56	59	8.9999
(..	chr2:219677579-219677832(+)$1	1	11	14	8.9999
.((	chr1:19561523-19561851(-)$1	1	20	23	8.9999
)((	chr11:118922430-118922661(-)$1	1	78	81	8.9999
.((	chr6:31919717-31919938(+)$1	1	26	29	8.9999

#PSSM
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	

#score	845.9999999999998
#seq	94
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_transcript_m1_run2.nuc.txt

#NT
CCCCUCCCAACCC	chr11:838504-838790(+)$1	286	112	125	21.2727
ccccccuccuccc	chr19:56173693-56173957(+)$1	264	43	56	21.7272
ucccuccccuccc	chr1:20812227-20812502(-)$1	275	131	144	26.1590
ACCCUCCCCUCUC	chr11:2151111-2151332(-)$1	221	3	16	21.4999
cccuuccucuccc	chr3:171910809-171911076(+)$1	267	156	169	22.2954
CCCCUCCCCUUCC	chr16:28834334-28834598(+)$1	264	45	58	25.4772
ccccggccccccc	chr11:2160482-2160715(-)$1	233	133	146	20.1363
CACCUGCCCUCCC	chr6:41567476-41567753(+)$1	277	260	273	22.4090
cgcccccccuccc	chr11:65325173-65325466(-)$1	293	4	17	22.1818
CCCCUCCCCUCCC	chr7:100771592-100771854(+)$1	262	18	31	29.3409
CCCCACCUCUUCC	chr1:1152553-1152816(-)$1	263	8	21	19.2272
ccccuccccuccc	chr17:36904405-36904681(-)$1	276	58	71	29.3409
ACCCUCCCCUCUC	chr11:2151168-2151370(-)$1	202	41	54	21.4999
CCCUGCCCCUCCC	chr1:1163979-1164248(-)$1	269	31	44	22.7499
CCCCACCUCUCCC	chr7:917099-917383(+)$1	284	148	161	23.0909
CCCCUCCUCUCCA	chr11:61067368-61067615(-)$1	247	65	78	21.3863
CCCUUCCCCUCCC	chr11:2154348-2154553(-)$1	205	85	98	25.7045
CCUAUCCCCUCCC	chr6:42988557-42988851(+)$1	294	278	291	20.7045
CCUGUCCCCUCCC	chr17:17723517-17723808(-)$1	291	169	182	20.7045
cgccuccccuccc	chr2:68479301-68479572(-)$1	271	168	181	25.4772
ucccucccguccc	chr11:2159838-2160060(-)$1	222	81	94	21.7272
ccccucuccuccc	chr17:30263993-30264266(+)$1	273	137	150	25.0227
uuccuccccuccc	chr16:69733951-69734234(+)$1	283	50	63	22.2954
CCCCUCGCCUGCC	chr17:7215525-7215802(+)$1	277	56	69	20.9318
CUCCAGCCCUCCC	chr11:2160091-2160295(-)$1	204	11	24	19.7954
CCCCACCCCACCC	chr19:14203527-14203827(-)$1	300	22	35	22.8636
ACCCUCCCCUCUC	chr11:2151135-2151352(-)$1	217	23	36	21.4999
ccccggccccccc	chr11:2160515-2160719(-)$1	204	137	150	20.1363
CCCUACCCCUCCC	chr17:73842630-73842936(-)$1	306	160	173	22.8636
ccccggccccccc	chr11:2160366-2160589(-)$1	223	7	20	20.1363
CCCCUGCUCUCCC	chr19:40884006-40884332(+)$1	326	196	209	23.0909
CCCUUCCCCUCCC	chr11:2154324-2154548(-)$1	224	80	93	25.7045
CCCCUCCCUUCCG	chr6:41567750-41568017(+)$1	267	158	171	20.4772
CCCCUGCCUCCCC	chr19:3208334-3208601(+)$1	267	50	63	18.7727
gcccuccccugcc	chr19:56172475-56172758(+)$1	283	85	98	21.4999
uuccuccccuccc	chr16:69733870-69734151(+)$1	281	131	144	22.2954
CGCCUCGCCUCCC	chr19:45411986-45412230(+)$1	244	26	39	21.1590
CCCCUGCCCGUCC	chr17:80049381-80049600(-)$1	219	148	161	18.7727
ccccuucucuccc	chr2:61625402-61625693(-)$1	291	141	154	22.1818
ccccaccccaccc	chr17:80036809-80037033(-)$1	224	54	67	22.8636
ucccuccccuccu	chr10:74787454-74787751(-)$1	297	130	143	21.6136
ccccggccccccc	chr11:2160420-2160626(-)$1	206	44	57	20.1363
ccccuccucuucc	chr16:16291377-16291672(-)$1	295	161	174	22.0681

#otherMatches

#Struct PSSM
22eeeee::::::	chr3:184097555-184097814(+)$1	259	45	58	26.1590
ddd22eeeee22c	chr11:838504-838790(+)$1	286	112	125	21.2727
:::::::::::::	chr19:56173693-56173957(+)$1	264	43	56	21.7272
:::::::::::::	chr1:20812227-20812502(-)$1	275	131	144	26.1590
::ffffff!!eee	chr11:2151111-2151332(-)$1	221	3	16	21.4999
:::::::::::::	chr3:171910809-171911076(+)$1	267	156	169	22.2954
:::::::::::::	chr16:28834334-28834598(+)$1	264	45	58	25.4772
e::eeeeesssss	chr11:2160482-2160715(-)$1	233	133	146	20.1363
:::cccooooooc	chr6:41567476-41567753(+)$1	277	260	273	22.4090
AACCCdddd[fff	chr11:65325173-65325466(-)$1	293	4	17	22.1818
BBCCC::::::::	chr7:100771592-100771854(+)$1	262	18	31	29.3409
::dddd$$$$$cc	chr1:1152553-1152816(-)$1	263	8	21	19.2272
EE:::::::::::	chr17:36904405-36904681(-)$1	276	58	71	29.3409
::ffffff!!eee	chr11:2151168-2151370(-)$1	202	41	54	21.4999
A{BBeeeee&&&&	chr1:1163979-1164248(-)$1	269	31	44	22.7499
:::::::::::::	chr7:917099-917383(+)$1	284	148	161	23.0909
:CCCLLLDDDD::	chr11:61067368-61067615(-)$1	247	65	78	21.3863
a]eeeee::::::	chr11:2154348-2154553(-)$1	205	85	98	25.7045
ccc]dddd]dddd	chr6:42988557-42988851(+)$1	294	278	291	20.7045
^^^^^^^^^^^^^	chr17:17723517-17723808(-)$1	291	169	182	20.7045
[bbwwwwwwwwww	chr2:68479301-68479572(-)$1	271	168	181	25.4772
::::::::ccc&&	chr11:2159838-2160060(-)$1	222	81	94	21.7272
HHHHH}CCCYYA}	chr17:30263993-30264266(+)$1	273	137	150	25.0227
::::::::annnn	chr16:69733951-69734234(+)$1	283	50	63	22.2954
EEdddd[ccc[cc	chr17:7215525-7215802(+)$1	277	56	69	20.9318
CKKAGGGGGGGLL	chr11:2160091-2160295(-)$1	204	11	24	19.7954
:::::::::::::	chr19:14203527-14203827(-)$1	300	22	35	22.8636
::ffffff!!eee	chr11:2151135-2151352(-)$1	217	23	36	21.4999
e::eeeeesssss	chr11:2160515-2160719(-)$1	204	137	150	20.1363
a[a!!ddddpppp	chr17:73842630-73842936(-)$1	306	160	173	22.8636
EEEeeeeesssss	chr11:2160366-2160589(-)$1	223	7	20	20.1363
JJJJJEEEEE:::	chr19:40884006-40884332(+)$1	326	196	209	23.0909
a]eeeeeccc]bb	chr11:2154324-2154548(-)$1	224	80	93	25.7045
###iiiiiiiii[	chr6:41567750-41568017(+)$1	267	158	171	20.4772
llffffff]dddd	chr19:3208334-3208601(+)$1	267	50	63	18.7727
ccc&&&&&&&fff	chr19:56172475-56172758(+)$1	283	85	98	21.4999
:::::::::::::	chr16:69733870-69734151(+)$1	281	131	144	22.2954
cclllccc22ccc	chr19:45411986-45412230(+)$1	244	26	39	21.1590
cceeeeehhhhhh	chr17:80049381-80049600(-)$1	219	148	161	18.7727
:::::::::::::	chr2:61625402-61625693(-)$1	291	141	154	22.1818
:ffffff&&&&&&	chr17:80036809-80037033(-)$1	224	54	67	22.8636
:::::::::::::	chr10:74787454-74787751(-)$1	297	130	143	21.6136
"""eeeeesssss	chr11:2160420-2160626(-)$1	206	44	57	20.1363
>>>>>>>>>>>>>	chr16:16291377-16291672(-)$1	295	161	174	22.0681

#DB
..)))))......	chr3:184097555-184097814(+)$1	1	45	58	26.1590
)))..)))))..)	chr11:838504-838790(+)$1	1	112	125	21.2727
.............	chr19:56173693-56173957(+)$1	1	43	56	21.7272
.............	chr1:20812227-20812502(-)$1	1	131	144	26.1590
..((((((..(((	chr11:2151111-2151332(-)$1	1	3	16	21.4999
.............	chr3:171910809-171911076(+)$1	1	156	169	22.2954
.............	chr16:28834334-28834598(+)$1	1	45	58	25.4772
)..(((((.....	chr11:2160482-2160715(-)$1	1	133	146	20.1363
...(((......)	chr6:41567476-41567753(+)$1	1	260	273	22.4090
(((((((((.(((	chr11:65325173-65325466(-)$1	1	4	17	22.1818
(((((........	chr7:100771592-100771854(+)$1	1	18	31	29.3409
..((((.....((	chr1:1152553-1152816(-)$1	1	8	21	19.2272
((...........	chr17:36904405-36904681(-)$1	1	58	71	29.3409
..((((((..(((	chr11:2151168-2151370(-)$1	1	41	54	21.4999
(.(((((((....	chr1:1163979-1164248(-)$1	1	31	44	22.7499
.............	chr7:917099-917383(+)$1	1	148	161	23.0909
.(((...((((..	chr11:61067368-61067615(-)$1	1	65	78	21.3863
).)))))......	chr11:2154348-2154553(-)$1	1	85	98	25.7045
))).)))).))))	chr6:42988557-42988851(+)$1	1	278	291	20.7045
.............	chr17:17723517-17723808(-)$1	1	169	182	20.7045
.((..........	chr2:68479301-68479572(-)$1	1	168	181	25.4772
........(((..	chr11:2159838-2160060(-)$1	1	81	94	21.7272
))))).)))..).	chr17:30263993-30264266(+)$1	1	137	150	25.0227
........(....	chr16:69733951-69734234(+)$1	1	50	63	22.2954
((((((.(((.((	chr17:7215525-7215802(+)$1	1	56	69	20.9318
(..((((((((..	chr11:2160091-2160295(-)$1	1	11	24	19.7954
.............	chr19:14203527-14203827(-)$1	1	22	35	22.8636
..((((((..(((	chr11:2151135-2151352(-)$1	1	23	36	21.4999
)..(((((.....	chr11:2160515-2160719(-)$1	1	137	150	20.1363
(.(..((((....	chr17:73842630-73842936(-)$1	1	160	173	22.8636
((((((((.....	chr11:2160366-2160589(-)$1	1	7	20	20.1363
((((((((((...	chr19:40884006-40884332(+)$1	1	196	209	23.0909
).)))))))).))	chr11:2154324-2154548(-)$1	1	80	93	25.7045
...(((((((((.	chr6:41567750-41568017(+)$1	1	158	171	20.4772
..)))))).))))	chr19:3208334-3208601(+)$1	1	50	63	18.7727
(((.......(((	chr19:56172475-56172758(+)$1	1	85	98	21.4999
.............	chr16:69733870-69734151(+)$1	1	131	144	22.2954
((...)))..)))	chr19:45411986-45412230(+)$1	1	26	39	21.1590
)))))))))))))	chr17:80049381-80049600(-)$1	1	148	161	18.7727
.............	chr2:61625402-61625693(-)$1	1	141	154	22.1818
.((((((......	chr17:80036809-80037033(-)$1	1	54	67	22.8636
.............	chr10:74787454-74787751(-)$1	1	130	143	21.6136
...(((((.....	chr11:2160420-2160626(-)$1	1	44	57	20.1363
.............	chr16:16291377-16291672(-)$1	1	161	174	22.0681

#PSSM
C : 0.47	c : 0.29	u : 0.11	A : 0.06	U : 0.02	g : 0.02	
C : 0.47	c : 0.36	g : 0.04	u : 0.04	A : 0.02	U : 0.02	G : 0.02	
C : 0.49	c : 0.45	U : 0.04	
c : 0.43	C : 0.40	U : 0.09	u : 0.02	A : 0.02	G : 0.02	
U : 0.40	u : 0.29	A : 0.11	g : 0.09	c : 0.04	G : 0.02	a : 0.02	
C : 0.43	c : 0.34	G : 0.11	g : 0.09	u : 0.02	
C : 0.49	c : 0.40	u : 0.04	G : 0.04	
C : 0.45	c : 0.38	U : 0.09	u : 0.06	
C : 0.47	c : 0.43	U : 0.04	A : 0.02	g : 0.02	
U : 0.45	u : 0.34	c : 0.09	A : 0.04	C : 0.02	G : 0.02	a : 0.02	
C : 0.45	c : 0.40	U : 0.06	G : 0.02	g : 0.02	u : 0.02	
C : 0.47	c : 0.45	U : 0.06	
C : 0.49	c : 0.43	A : 0.02	G : 0.02	u : 0.02	

#score	986.4545454545448
#seq	44
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_UTR_m2_run1.nuc.txt

#NT
ACUGGAG	chr9:130551931-130552188(+)$1	257	37	44	12.9402
GCUGGAG	chr1:55317372-55317613(-)$1	241	188	195	13.2388
GCUGGAG	chr17:78184609-78184869(-)$1	260	162	169	13.2388
CCUGGAC	chr22:21982745-21982953(-)$1	208	168	175	12.6417
UCUGGAG	chr14:34418963-34419209(-)$1	246	60	67	13.2388
CGUGGAG	chr1:109234947-109235154(+)$1	207	47	54	12.7164
CCUGGAC	chr12:133360450-133360735(-)$1	285	37	44	12.6417
GCUGGAG	chr2:70142321-70142581(+)$1	260	176	183	13.2388
CCUGGAA	chr9:101552521-101552795(-)$1	274	36	43	12.4925
GCUGGAG	chr5:6600164-6600384(-)$1	220	150	157	13.2388
CCUGGGG	chr19:13264725-13264958(+)$1	233	36	43	12.7164
CCUGGGG	chr5:179045050-179045300(-)$1	250	76	83	12.7164
CCUGGAG	chr16:89346993-89347209(-)$1	216	49	56	16.7462
CCGGGAG	chr11:82868375-82868634(+)$1	259	147	154	12.4179
CCUGAAG	chr7:129125485-129125768(+)$1	283	92	99	12.5671
UCUGGAG	chr16:67863789-67864006(-)$1	217	104	111	13.2388
CCUGAAG	chr19:55559299-55559580(-)$1	281	35	42	12.5671
CGUGGAG	chr2:61404549-61404835(+)$1	286	159	166	12.7164
CCUGAAG	chr6:126661235-126661501(+)$1	266	70	77	12.5671
CCUGGAA	chr12:104170815-104171072(-)$1	257	40	47	12.4925
CGUGGAG	chr1:59247480-59247713(-)$1	233	168	175	12.7164
CGUGGAG	chrX:119005522-119005771(-)$1	249	125	132	12.7164
CCUCGAG	chr10:65028793-65029057(-)$1	264	215	222	12.3432
CCUGGAG	chr19:11241954-11242163(+)$1	209	45	52	16.7462
CCUGGAU	chr7:151860514-151860777(-)$1	263	112	119	12.4925
CUUGGAG	chr16:24550933-24551167(+)$1	234	2	9	12.4179
CCUGGCG	chr16:70433214-70433452(-)$1	238	32	39	12.4925
CCUGGAG	chr17:18167534-18167805(+)$1	271	66	73	16.7462
CCUGGAG	chr6:37141909-37142121(+)$1	212	112	119	16.7462
CCUGAAG	chr1:212792797-212793045(+)$1	248	161	168	12.5671
CCUGGAG	chr1:47184028-47184251(-)$1	223	104	111	16.7462
CAUGGAG	chr2:96950846-96951107(-)$1	261	168	175	12.4925
CCUGGUG	chr3:187447396-187447704(-)$1	308	226	233	12.7164
CCUGGUG	chr5:32126486-32126725(-)$1	239	50	57	12.7164
CCUGCAG	chr8:37702320-37702612(-)$1	292	59	66	12.2686
GCUGGAG	chr11:9286510-9286797(-)$1	287	267	274	13.2388
CCUGGGG	chr22:19121272-19121532(-)$1	260	133	140	12.7164
CCUGGAG	chr15:50474731-50474987(+)$1	256	69	76	16.7462
CCUGGAG	chr8:42911716-42911974(+)$1	258	9	16	16.7462
CCUCGAG	chr6:88411395-88411652(-)$1	257	155	162	12.3432
CCAGGAG	chr2:61406061-61406311(+)$1	250	93	100	12.5671
ACUGGAG	chr19:49140235-49140543(-)$1	308	159	166	12.9402
CCUGGAC	chr15:91537602-91537813(-)$1	211	135	142	12.6417
CCUUGAG	chr17:44248197-44248471(-)$1	274	19	26	12.2686
CCAGGAG	chr7:150069278-150069520(+)$1	242	59	66	12.5671
CCCGGAG	chr11:65408275-65408558(+)$1	283	93	100	12.3432
CCUGGGG	chr2:86254030-86254289(-)$1	259	196	203	12.7164
CCUGGAG	chr11:290302-290543(+)$1	241	103	110	16.7462
CAUGGAG	chr1:11863237-11863476(-)$1	239	136	143	12.4925
CCGGGAG	chr19:1020893-1021141(-)$1	248	45	52	12.4179
UCUGGAG	chr17:72767707-72767971(-)$1	264	45	52	13.2388
UCUGGAG	chr1:202116225-202116541(-)$1	316	15	22	13.2388
CCUGGAG	chr12:12870628-12870875(+)$1	247	180	187	16.7462
CCAGGAG	chr16:70432856-70433082(-)$1	226	104	111	12.5671
CCUUGAG	chr7:151874223-151874462(-)$1	239	33	40	12.2686
CCUGAAG	chr15:59041768-59042024(-)$1	256	128	135	12.5671
CCAGGAG	chr11:57193659-57193945(-)$1	286	255	262	12.5671
CCUGGUG	chr7:150069512-150069754(+)$1	242	68	75	12.7164
CCUGGAG	chr1:223983595-223983842(-)$1	247	205	212	16.7462
CCUCGAG	chr10:106073926-106074217(-)$1	291	74	81	12.3432
UCUGGAG	chr16:89350245-89350502(-)$1	257	21	28	13.2388
CCUGGAC	chr16:71961499-71961767(+)$1	268	19	26	12.6417
CCUGGAU	chr11:6625410-6625661(+)$1	251	28	35	12.4925
CGUGGAG	chr14:105478089-105478369(-)$1	280	150	157	12.7164
GCUGGAG	chr12:117476788-117477006(-)$1	218	126	133	13.2388
UCUGGAG	chr19:19616910-19617152(+)$1	242	105	112	13.2388

#otherMatches

#Struct PSSM
dddeeee	chr19:11242594-11242847(+)$1	253	160	167	12.7164
:A{EEEE	chr9:130551931-130552188(+)$1	257	37	44	12.9402
bb[bboo	chr1:55317372-55317613(-)$1	241	188	195	13.2388
4444ddd	chr17:78184609-78184869(-)$1	260	162	169	13.2388
BB}CCCZ	chr22:21982745-21982953(-)$1	208	168	175	12.6417
mbb]ccc	chr14:34418963-34419209(-)$1	246	60	67	13.2388
ee[annn	chr1:109234947-109235154(+)$1	207	47	54	12.7164
"""bbnn	chr12:133360450-133360735(-)$1	285	37	44	12.6417
GGGGYYA	chr2:70142321-70142581(+)$1	260	176	183	13.2388
ebb[ddd	chr9:101552521-101552795(-)$1	274	36	43	12.4925
====333	chr5:6600164-6600384(-)$1	220	150	157	13.2388
qqqeeee	chr19:13264725-13264958(+)$1	233	36	43	12.7164
ggggg]d	chr5:179045050-179045300(-)$1	250	76	83	12.7164
mdddd]b	chr16:89346993-89347209(-)$1	216	49	56	16.7462
eeee[cc	chr11:82868375-82868634(+)$1	259	147	154	12.4179
CCCffff	chr7:129125485-129125768(+)$1	283	92	99	12.5671
cc]ccc:	chr16:67863789-67864006(-)$1	217	104	111	13.2388
DDD::hh	chr19:55559299-55559580(-)$1	281	35	42	12.5671
fffff]b	chr2:61404549-61404835(+)$1	286	159	166	12.7164
nnna]ff	chr6:126661235-126661501(+)$1	266	70	77	12.5671
coooooo	chr12:104170815-104171072(-)$1	257	40	47	12.4925
cnnnnnc	chr1:59247480-59247713(-)$1	233	168	175	12.7164
cc]dddd	chrX:119005522-119005771(-)$1	249	125	132	12.7164
4cccggg	chr10:65028793-65029057(-)$1	264	215	222	12.3432
ddbb22d	chr19:11241954-11242163(+)$1	209	45	52	16.7462
]ccc::c	chr7:151860514-151860777(-)$1	263	112	119	12.4925
DD{BB{C	chr16:24550933-24551167(+)$1	234	2	9	12.4179
ggggggg	chr16:70433214-70433452(-)$1	238	32	39	12.4925
bnnnnnb	chr17:18167534-18167805(+)$1	271	66	73	16.7462
iiiiiii	chr6:37141909-37142121(+)$1	212	112	119	16.7462
c55555b	chr1:212792797-212793045(+)$1	248	161	168	12.5671
ff]ffff	chr1:47184028-47184251(-)$1	223	104	111	16.7462
c]ccc]f	chr2:96950846-96951107(-)$1	261	168	175	12.4925
BB:hhhh	chr3:187447396-187447704(-)$1	308	226	233	12.7164
::fffff	chr5:32126486-32126725(-)$1	239	50	57	12.7164
22bb22c	chr8:37702320-37702612(-)$1	292	59	66	12.2686
GGGG:cc	chr11:9286510-9286797(-)$1	287	267	274	13.2388
hhhhhhh	chr22:19121272-19121532(-)$1	260	133	140	12.7164
dddd]bb	chr15:50474731-50474987(+)$1	256	69	76	16.7462
ddccc[d	chr8:42911716-42911974(+)$1	258	9	16	16.7462
ccc:ddd	chr6:88411395-88411652(-)$1	257	155	162	12.3432
ggggggg	chr2:61406061-61406311(+)$1	250	93	100	12.5671
CCCGGGG	chr19:49140235-49140543(-)$1	308	159	166	12.9402
eeee22b	chr15:91537602-91537813(-)$1	211	135	142	12.6417
E{CCC{B	chr17:44248197-44248471(-)$1	274	19	26	12.2686
###bbll	chr7:150069278-150069520(+)$1	242	59	66	12.5671
eea[ccc	chr11:65408275-65408558(+)$1	283	93	100	12.3432
ggggg22	chr2:86254030-86254289(-)$1	259	196	203	12.7164
::CCC{F	chr11:290302-290543(+)$1	241	103	110	16.7462
cdddd55	chr1:11863237-11863476(-)$1	239	136	143	12.4925
ffmmmmf	chr19:1020893-1021141(-)$1	248	45	52	12.4179
ddddlll	chr17:72767707-72767971(-)$1	264	45	52	13.2388
%cccnnn	chr1:202116225-202116541(-)$1	316	15	22	13.2388
eeee!!c	chr12:12870628-12870875(+)$1	247	180	187	16.7462
ggggCCC	chr16:70432856-70433082(-)$1	226	104	111	12.5671
JJJJJJJ	chr7:151874223-151874462(-)$1	239	33	40	12.2686
eee:::h	chr15:59041768-59042024(-)$1	256	128	135	12.5671
ddmmmmd	chr11:57193659-57193945(-)$1	286	255	262	12.5671
GGGGGGG	chr7:150069512-150069754(+)$1	242	68	75	12.7164
##fffff	chr1:223983595-223983842(-)$1	247	205	212	16.7462
2ccc22d	chr10:106073926-106074217(-)$1	291	74	81	12.3432
GGGG{BB	chr16:89350245-89350502(-)$1	257	21	28	13.2388
e[dddd"	chr16:71961499-71961767(+)$1	268	19	26	12.6417
BKKBB{G	chr11:6625410-6625661(+)$1	251	28	35	12.4925
d::::cc	chr14:105478089-105478369(-)$1	280	150	157	12.7164
bb]dddd	chr12:117476788-117477006(-)$1	218	126	133	13.2388
ggggggg	chr19:19616910-19617152(+)$1	242	105	112	13.2388

#DB
)))))))	chr19:11242594-11242847(+)$1	1	160	167	12.7164
.(.((((	chr9:130551931-130552188(+)$1	1	37	44	12.9402
((.((..	chr1:55317372-55317613(-)$1	1	188	195	13.2388
....)))	chr17:78184609-78184869(-)$1	1	162	169	13.2388
)).))).	chr22:21982745-21982953(-)$1	1	168	175	12.6417
.)).)))	chr14:34418963-34419209(-)$1	1	60	67	13.2388
((.(...	chr1:109234947-109235154(+)$1	1	47	54	12.7164
...((..	chr12:133360450-133360735(-)$1	1	37	44	12.6417
))))..)	chr2:70142321-70142581(+)$1	1	176	183	13.2388
(((.(((	chr9:101552521-101552795(-)$1	1	36	43	12.4925
))))...	chr5:6600164-6600384(-)$1	1	150	157	13.2388
...))))	chr19:13264725-13264958(+)$1	1	36	43	12.7164
))))).)	chr5:179045050-179045300(-)$1	1	76	83	12.7164
.)))).)	chr16:89346993-89347209(-)$1	1	49	56	16.7462
((((.((	chr11:82868375-82868634(+)$1	1	147	154	12.4179
(((((((	chr7:129125485-129125768(+)$1	1	92	99	12.5671
)).))).	chr16:67863789-67864006(-)$1	1	104	111	13.2388
(((..((	chr19:55559299-55559580(-)$1	1	35	42	12.5671
))))).)	chr2:61404549-61404835(+)$1	1	159	166	12.7164
...).))	chr6:126661235-126661501(+)$1	1	70	77	12.5671
(......	chr12:104170815-104171072(-)$1	1	40	47	12.4925
(.....)	chr1:59247480-59247713(-)$1	1	168	175	12.7164
)).))))	chrX:119005522-119005771(-)$1	1	125	132	12.7164
.))))))	chr10:65028793-65029057(-)$1	1	215	222	12.3432
))))..)	chr19:11241954-11242163(+)$1	1	45	52	16.7462
.)))..(	chr7:151860514-151860777(-)$1	1	112	119	12.4925
((.((.(	chr16:24550933-24551167(+)$1	1	2	9	12.4179
(((((((	chr16:70433214-70433452(-)$1	1	32	39	12.4925
(.....)	chr17:18167534-18167805(+)$1	1	66	73	16.7462
(((((((	chr6:37141909-37142121(+)$1	1	112	119	16.7462
).....)	chr1:212792797-212793045(+)$1	1	161	168	12.5671
)).))))	chr1:47184028-47184251(-)$1	1	104	111	16.7462
).))).)	chr2:96950846-96951107(-)$1	1	168	175	12.4925
)).((((	chr3:187447396-187447704(-)$1	1	226	233	12.7164
..(((((	chr5:32126486-32126725(-)$1	1	50	57	12.7164
..))..)	chr8:37702320-37702612(-)$1	1	59	66	12.2686
)))).((	chr11:9286510-9286797(-)$1	1	267	274	13.2388
(((((((	chr22:19121272-19121532(-)$1	1	133	140	12.7164
)))).))	chr15:50474731-50474987(+)$1	1	69	76	16.7462
))(((.(	chr8:42911716-42911974(+)$1	1	9	16	16.7462
))).(((	chr6:88411395-88411652(-)$1	1	155	162	12.3432
)))))))	chr2:61406061-61406311(+)$1	1	93	100	12.5671
)))))))	chr19:49140235-49140543(-)$1	1	159	166	12.9402
))))..)	chr15:91537602-91537813(-)$1	1	135	142	12.6417
(.(((.(	chr17:44248197-44248471(-)$1	1	19	26	12.2686
...((..	chr7:150069278-150069520(+)$1	1	59	66	12.5671
(((.(((	chr11:65408275-65408558(+)$1	1	93	100	12.3432
)))))..	chr2:86254030-86254289(-)$1	1	196	203	12.7164
..(((.(	chr11:290302-290543(+)$1	1	103	110	16.7462
)))))..	chr1:11863237-11863476(-)$1	1	136	143	12.4925
((....)	chr19:1020893-1021141(-)$1	1	45	52	12.4179
((((...	chr17:72767707-72767971(-)$1	1	45	52	13.2388
.(((...	chr1:202116225-202116541(-)$1	1	15	22	13.2388
((((..(	chr12:12870628-12870875(+)$1	1	180	187	16.7462
)))))))	chr16:70432856-70433082(-)$1	1	104	111	12.5671
(((((((	chr7:151874223-151874462(-)$1	1	33	40	12.2686
)))...(	chr15:59041768-59042024(-)$1	1	128	135	12.5671
((....)	chr11:57193659-57193945(-)$1	1	255	262	12.5671
)))))))	chr7:150069512-150069754(+)$1	1	68	75	12.7164
..(((((	chr1:223983595-223983842(-)$1	1	205	212	16.7462
.)))..)	chr10:106073926-106074217(-)$1	1	74	81	12.3432
((((.((	chr16:89350245-89350502(-)$1	1	21	28	13.2388
(.((((.	chr16:71961499-71961767(+)$1	1	19	26	12.6417
(..((.(	chr11:6625410-6625661(+)$1	1	28	35	12.4925
)....((	chr14:105478089-105478369(-)$1	1	150	157	12.7164
)).))))	chr12:117476788-117477006(-)$1	1	126	133	13.2388
(((((((	chr19:19616910-19617152(+)$1	1	105	112	13.2388

#PSSM
C : 0.79	G : 0.08	U : 0.08	A : 0.02	
C : 0.88	G : 0.07	A : 0.02	U : 0.01	
U : 0.89	A : 0.05	G : 0.02	C : 0.01	
G : 0.92	C : 0.04	U : 0.02	
G : 0.91	A : 0.07	C : 0.01	
A : 0.86	U : 0.05	G : 0.05	C : 0.01	
G : 0.88	C : 0.05	A : 0.02	U : 0.02	

#score	892.0746268656726
#seq	67
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_UTR_m3_run2.nuc.txt

#NT
GGAG	chr9:134351204-134351447(+)$1	243	139	143	12.0000
GGAG	chr6:168227704-168227984(+)$1	280	90	94	12.0000
GGAG	chr3:184039366-184039629(+)$1	263	127	131	12.0000
GGAG	chr3:184020388-184020630(+)$1	242	129	133	12.0000
GGAG	chr9:95033714-95034003(-)$1	289	65	69	12.0000
GGAG	chr4:151935759-151936014(-)$1	255	26	30	12.0000
GGAG	chr5:139059922-139060227(+)$1	305	282	286	12.0000
GGAG	chr11:70116734-70117037(+)$1	303	223	227	12.0000
GGAG	chr2:153573802-153574058(-)$1	256	130	134	12.0000
GGAG	chr16:89346589-89346825(-)$1	236	61	65	12.0000
GGAG	chr8:53626544-53626835(-)$1	291	184	188	12.0000
GGAG	chr3:184042565-184042791(+)$1	226	187	191	12.0000
GGAG	chr1:186344234-186344483(-)$1	249	1	5	12.0000
GGAG	chr11:57076267-57076571(-)$1	304	20	24	12.0000
GGAG	chr1:220267669-220267924(+)$1	255	137	141	12.0000
GGAG	chr11:62303925-62304139(-)$1	214	46	50	12.0000
GGAG	chrX:53559997-53560248(-)$1	251	29	33	12.0000
GGAG	chr15:30114104-30114418(-)$1	314	90	94	12.0000
GGAG	chr14:65346431-65346691(-)$1	260	96	100	12.0000
GGAG	chr3:184041092-184041334(+)$1	242	10	14	12.0000
GGAG	chr12:111157521-111157807(-)$1	286	134	138	12.0000
GGAG	chr9:134000922-134001199(+)$1	277	80	84	12.0000
GGAG	chr12:113623112-113623363(-)$1	251	13	17	12.0000
GGAG	chr19:10270417-10270677(-)$1	260	34	38	12.0000
GGAG	chr20:43567857-43568068(+)$1	211	112	116	12.0000
GGAG	chr12:6625912-6626174(+)$1	262	119	123	12.0000
GGAG	chrX:153583092-153583298(-)$1	206	110	114	12.0000
GGAG	chr6:31750282-31750501(-)$1	219	38	42	12.0000
GGAG	chr3:127334655-127334894(+)$1	239	121	125	12.0000
GGAG	chr3:47887723-47887970(+)$1	247	65	69	12.0000
GGAG	chr7:2420011-2420287(+)$1	276	94	98	12.0000
GGAG	chr8:125551383-125551629(+)$1	246	171	175	12.0000
GGAG	chr2:55646621-55646917(-)$1	296	69	73	12.0000
GGAG	chr3:127339485-127339726(+)$1	241	111	115	12.0000
ggag	chr10:71075551-71075776(+)$1	225	53	57	12.0000
GGAG	chr1:19443663-19443892(-)$1	229	163	167	12.0000
GGAG	chr7:44646083-44646353(+)$1	270	46	50	12.0000
GGAG	chr17:45727705-45727910(+)$1	205	53	57	12.0000
GGAG	chr3:184046627-184046879(+)$1	252	1	5	12.0000
GGAG	chr3:138553443-138553727(-)$1	284	20	24	12.0000
GGAG	chr12:57905378-57905661(+)$1	283	104	108	12.0000
GGAG	chr5:138264898-138265146(+)$1	248	44	48	12.0000
GGAG	chr12:112856652-112857024(+)$1	372	62	66	12.0000
GGAG	chr1:220267355-220267653(+)$1	298	7	11	12.0000
GGAG	chr7:150068905-150069156(+)$1	251	36	40	12.0000
GGAG	chr3:184039486-184039721(+)$1	235	7	11	12.0000
GGAG	chr5:140908366-140908609(-)$1	243	6	10	12.0000
GGAG	chr6:31763254-31763509(-)$1	255	66	70	12.0000
GGAG	chr2:231921581-231921858(+)$1	277	29	33	12.0000
GGAG	chr3:184020065-184020348(+)$1	283	212	216	12.0000
GGAG	chr21:45079411-45079673(+)$1	262	256	260	12.0000
GGAG	chr7:158449243-158449479(-)$1	236	33	37	12.0000
GGAG	chr3:184039059-184039313(+)$1	254	24	28	12.0000
GGAG	chr11:61077677-61077962(-)$1	285	141	145	12.0000
GGAG	chr20:2443204-2443488(-)$1	284	266	270	12.0000
GGAG	chr9:133760979-133761213(+)$1	234	122	126	12.0000
GGAG	chr3:47887658-47887904(+)$1	246	4	8	12.0000
GGAG	chr2:73461338-73461587(+)$1	249	125	129	12.0000
GGAG	chr11:9406239-9406495(+)$1	256	136	140	12.0000
GGAG	chr11:57585812-57586070(+)$1	258	212	216	12.0000
GGAG	chr1:62902665-62902939(+)$1	274	22	26	12.0000
GGAG	chr9:95030356-95030607(-)$1	251	148	152	12.0000
GGAG	chrX:153592798-153593021(-)$1	223	19	23	12.0000
GGAG	chr12:116714827-116715086(-)$1	259	142	146	12.0000
GGAG	chr9:35731992-35732210(-)$1	218	54	58	12.0000
GGAG	chr12:6626070-6626291(+)$1	221	77	81	12.0000
GGAG	chr5:140957695-140957956(-)$1	261	156	160	12.0000
GGAG	chr14:31676507-31676834(-)$1	327	77	81	12.0000
GGAG	chr3:184052732-184053014(+)$1	282	230	234	12.0000
GGAG	chr11:64846928-64847173(-)$1	245	55	59	12.0000
GGAG	chr11:61088966-61089213(-)$1	247	228	232	12.0000
GGAG	chr17:80422096-80422381(+)$1	285	69	73	12.0000
GGAG	chrX:153590509-153590742(-)$1	233	74	78	12.0000
GGAG	chrX:153592631-153592840(-)$1	209	123	127	12.0000
GGAG	chr7:99693304-99693536(-)$1	232	47	51	12.0000
GGAG	chr3:184044240-184044495(+)$1	255	113	117	12.0000
GGAG	chr10:129924330-129924584(-)$1	254	29	33	12.0000
GGAG	chr5:154173591-154173829(+)$1	238	111	115	12.0000
GGAG	chrX:153582883-153583090(-)$1	207	182	186	12.0000
GGAG	chr3:184037458-184037690(+)$1	232	118	122	12.0000
GGAG	chr2:96950820-96951079(-)$1	259	113	117	12.0000
GGAG	chr7:72936135-72936375(-)$1	240	163	167	12.0000
GGAG	chr3:33840062-33840330(+)$1	268	3	7	12.0000
GGAG	chr3:184037407-184037640(+)$1	233	169	173	12.0000
GGAG	chrX:153581898-153582122(-)$1	224	214	218	12.0000

#otherMatches

#Struct PSSM
dd]a	chr1:156100312-156100607(+)$1	295	29	33	12.0000
ffff	chr9:134351204-134351447(+)$1	243	139	143	12.0000
eeee	chr6:168227704-168227984(+)$1	280	90	94	12.0000
dddd	chr3:184039366-184039629(+)$1	263	127	131	12.0000
e[gg	chr3:184020388-184020630(+)$1	242	129	133	12.0000
ffff	chr9:95033714-95034003(-)$1	289	65	69	12.0000
ffff	chr4:151935759-151936014(-)$1	255	26	30	12.0000
eeee	chr5:139059922-139060227(+)$1	305	282	286	12.0000
eeee	chr11:70116734-70117037(+)$1	303	223	227	12.0000
eeee	chr2:153573802-153574058(-)$1	256	130	134	12.0000
eeee	chr16:89346589-89346825(-)$1	236	61	65	12.0000
ee[c	chr8:53626544-53626835(-)$1	291	184	188	12.0000
iiii	chr3:184042565-184042791(+)$1	226	187	191	12.0000
::::	chr1:186344234-186344483(-)$1	249	1	5	12.0000
ssss	chr11:57076267-57076571(-)$1	304	20	24	12.0000
cc:e	chr1:220267669-220267924(+)$1	255	137	141	12.0000
eeee	chr11:62303925-62304139(-)$1	214	46	50	12.0000
JJJJ	chrX:53559997-53560248(-)$1	251	29	33	12.0000
]ccc	chr15:30114104-30114418(-)$1	314	90	94	12.0000
bbmm	chr14:65346431-65346691(-)$1	260	96	100	12.0000
FFdd	chr3:184041092-184041334(+)$1	242	10	14	12.0000
hhhh	chr12:111157521-111157807(-)$1	286	134	138	12.0000
HHHH	chr9:134000922-134001199(+)$1	277	80	84	12.0000
ffff	chr12:113623112-113623363(-)$1	251	13	17	12.0000
llff	chr19:10270417-10270677(-)$1	260	34	38	12.0000
ccc[	chr20:43567857-43568068(+)$1	211	112	116	12.0000
DDDD	chr12:6625912-6626174(+)$1	262	119	123	12.0000
hhhh	chrX:153583092-153583298(-)$1	206	110	114	12.0000
eeeb	chr6:31750282-31750501(-)$1	219	38	42	12.0000
GGGG	chr3:127334655-127334894(+)$1	239	121	125	12.0000
cc]e	chr3:47887723-47887970(+)$1	247	65	69	12.0000
ffff	chr7:2420011-2420287(+)$1	276	94	98	12.0000
iiee	chr8:125551383-125551629(+)$1	246	171	175	12.0000
mmmd	chr2:55646621-55646917(-)$1	296	69	73	12.0000
ccc[	chr3:127339485-127339726(+)$1	241	111	115	12.0000
ppgg	chr10:71075551-71075776(+)$1	225	53	57	12.0000
d!!c	chr1:19443663-19443892(-)$1	229	163	167	12.0000
hhhh	chr7:44646083-44646353(+)$1	270	46	50	12.0000
dddd	chr17:45727705-45727910(+)$1	205	53	57	12.0000
iiii	chr3:184046627-184046879(+)$1	252	1	5	12.0000
b"""	chr3:138553443-138553727(-)$1	284	20	24	12.0000
nddd	chr12:57905378-57905661(+)$1	283	104	108	12.0000
FF{B	chr5:138264898-138265146(+)$1	248	44	48	12.0000
dd[b	chr12:112856652-112857024(+)$1	372	62	66	12.0000
gggg	chr1:220267355-220267653(+)$1	298	7	11	12.0000
====	chr7:150068905-150069156(+)$1	251	36	40	12.0000
ccc$	chr3:184039486-184039721(+)$1	235	7	11	12.0000
:::c	chr5:140908366-140908609(-)$1	243	6	10	12.0000
ccc2	chr6:31763254-31763509(-)$1	255	66	70	12.0000
FFFF	chr2:231921581-231921858(+)$1	277	29	33	12.0000
gggg	chr3:184020065-184020348(+)$1	283	212	216	12.0000
CC::	chr21:45079411-45079673(+)$1	262	256	260	12.0000
fff:	chr7:158449243-158449479(-)$1	236	33	37	12.0000
[bbm	chr3:184039059-184039313(+)$1	254	24	28	12.0000
nnnn	chr11:61077677-61077962(-)$1	285	141	145	12.0000
cc]g	chr20:2443204-2443488(-)$1	284	266	270	12.0000
!a[d	chr9:133760979-133761213(+)$1	234	122	126	12.0000
:a[f	chr3:47887658-47887904(+)$1	246	4	8	12.0000
EEEE	chr2:73461338-73461587(+)$1	249	125	129	12.0000
bddd	chr11:9406239-9406495(+)$1	256	136	140	12.0000
====	chr11:57585812-57586070(+)$1	258	212	216	12.0000
ddd[	chr1:62902665-62902939(+)$1	274	22	26	12.0000
666d	chr9:95030356-95030607(-)$1	251	148	152	12.0000
nnnn	chrX:153592798-153593021(-)$1	223	19	23	12.0000
b[bb	chr12:116714827-116715086(-)$1	259	142	146	12.0000
bb]e	chr9:35731992-35732210(-)$1	218	54	58	12.0000
eeee	chr12:6626070-6626291(+)$1	221	77	81	12.0000
bb22	chr5:140957695-140957956(-)$1	261	156	160	12.0000
I{CC	chr14:31676507-31676834(-)$1	327	77	81	12.0000
====	chr3:184052732-184053014(+)$1	282	230	234	12.0000
pa]i	chr11:64846928-64847173(-)$1	245	55	59	12.0000
GGGG	chr11:61088966-61089213(-)$1	247	228	232	12.0000
ffff	chr17:80422096-80422381(+)$1	285	69	73	12.0000
ee:f	chrX:153590509-153590742(-)$1	233	74	78	12.0000
dddd	chrX:153592631-153592840(-)$1	209	123	127	12.0000
gggg	chr7:99693304-99693536(-)$1	232	47	51	12.0000
::::	chr3:184044240-184044495(+)$1	255	113	117	12.0000
FFFc	chr10:129924330-129924584(-)$1	254	29	33	12.0000
ee]c	chr5:154173591-154173829(+)$1	238	111	115	12.0000
ffff	chrX:153582883-153583090(-)$1	207	182	186	12.0000
ffff	chr3:184037458-184037690(+)$1	232	118	122	12.0000
ccc2	chr2:96950820-96951079(-)$1	259	113	117	12.0000
HHHH	chr7:72936135-72936375(-)$1	240	163	167	12.0000
ee[c	chr3:33840062-33840330(+)$1	268	3	7	12.0000
ffff	chr3:184037407-184037640(+)$1	233	169	173	12.0000
DD::	chrX:153581898-153582122(-)$1	224	214	218	12.0000

#DB
)).)	chr1:156100312-156100607(+)$1	1	29	33	12.0000
((((	chr9:134351204-134351447(+)$1	1	139	143	12.0000
))))	chr6:168227704-168227984(+)$1	1	90	94	12.0000
((((	chr3:184039366-184039629(+)$1	1	127	131	12.0000
(.((	chr3:184020388-184020630(+)$1	1	129	133	12.0000
))))	chr9:95033714-95034003(-)$1	1	65	69	12.0000
((((	chr4:151935759-151936014(-)$1	1	26	30	12.0000
))))	chr5:139059922-139060227(+)$1	1	282	286	12.0000
))))	chr11:70116734-70117037(+)$1	1	223	227	12.0000
))))	chr2:153573802-153574058(-)$1	1	130	134	12.0000
((((	chr16:89346589-89346825(-)$1	1	61	65	12.0000
((.(	chr8:53626544-53626835(-)$1	1	184	188	12.0000
))))	chr3:184042565-184042791(+)$1	1	187	191	12.0000
....	chr1:186344234-186344483(-)$1	1	1	5	12.0000
....	chr11:57076267-57076571(-)$1	1	20	24	12.0000
)).(	chr1:220267669-220267924(+)$1	1	137	141	12.0000
((((	chr11:62303925-62304139(-)$1	1	46	50	12.0000
((((	chrX:53559997-53560248(-)$1	1	29	33	12.0000
.)))	chr15:30114104-30114418(-)$1	1	90	94	12.0000
((..	chr14:65346431-65346691(-)$1	1	96	100	12.0000
((((	chr3:184041092-184041334(+)$1	1	10	14	12.0000
((((	chr12:111157521-111157807(-)$1	1	134	138	12.0000
))))	chr9:134000922-134001199(+)$1	1	80	84	12.0000
((((	chr12:113623112-113623363(-)$1	1	13	17	12.0000
..))	chr19:10270417-10270677(-)$1	1	34	38	12.0000
(((.	chr20:43567857-43568068(+)$1	1	112	116	12.0000
((((	chr12:6625912-6626174(+)$1	1	119	123	12.0000
))))	chrX:153583092-153583298(-)$1	1	110	114	12.0000
((((	chr6:31750282-31750501(-)$1	1	38	42	12.0000
))))	chr3:127334655-127334894(+)$1	1	121	125	12.0000
)).)	chr3:47887723-47887970(+)$1	1	65	69	12.0000
((((	chr7:2420011-2420287(+)$1	1	94	98	12.0000
))((	chr8:125551383-125551629(+)$1	1	171	175	12.0000
...)	chr2:55646621-55646917(-)$1	1	69	73	12.0000
(((.	chr3:127339485-127339726(+)$1	1	111	115	12.0000
..))	chr10:71075551-71075776(+)$1	1	53	57	12.0000
(..(	chr1:19443663-19443892(-)$1	1	163	167	12.0000
((((	chr7:44646083-44646353(+)$1	1	46	50	12.0000
))))	chr17:45727705-45727910(+)$1	1	53	57	12.0000
((((	chr3:184046627-184046879(+)$1	1	1	5	12.0000
(...	chr3:138553443-138553727(-)$1	1	20	24	12.0000
.)))	chr12:57905378-57905661(+)$1	1	104	108	12.0000
((.(	chr5:138264898-138265146(+)$1	1	44	48	12.0000
((.(	chr12:112856652-112857024(+)$1	1	62	66	12.0000
((((	chr1:220267355-220267653(+)$1	1	7	11	12.0000
((((	chr7:150068905-150069156(+)$1	1	36	40	12.0000
(((.	chr3:184039486-184039721(+)$1	1	7	11	12.0000
...(	chr5:140908366-140908609(-)$1	1	6	10	12.0000
))).	chr6:31763254-31763509(-)$1	1	66	70	12.0000
((((	chr2:231921581-231921858(+)$1	1	29	33	12.0000
))))	chr3:184020065-184020348(+)$1	1	212	216	12.0000
))..	chr21:45079411-45079673(+)$1	1	256	260	12.0000
))).	chr7:158449243-158449479(-)$1	1	33	37	12.0000
.((.	chr3:184039059-184039313(+)$1	1	24	28	12.0000
....	chr11:61077677-61077962(-)$1	1	141	145	12.0000
)).)	chr20:2443204-2443488(-)$1	1	266	270	12.0000
.(.(	chr9:133760979-133761213(+)$1	1	122	126	12.0000
.(.(	chr3:47887658-47887904(+)$1	1	4	8	12.0000
))))	chr2:73461338-73461587(+)$1	1	125	129	12.0000
)(((	chr11:9406239-9406495(+)$1	1	136	140	12.0000
))))	chr11:57585812-57586070(+)$1	1	212	216	12.0000
(((.	chr1:62902665-62902939(+)$1	1	22	26	12.0000
...)	chr9:95030356-95030607(-)$1	1	148	152	12.0000
....	chrX:153592798-153593021(-)$1	1	19	23	12.0000
(.((	chr12:116714827-116715086(-)$1	1	142	146	12.0000
)).)	chr9:35731992-35732210(-)$1	1	54	58	12.0000
((((	chr12:6626070-6626291(+)$1	1	77	81	12.0000
))..	chr5:140957695-140957956(-)$1	1	156	160	12.0000
(.((	chr14:31676507-31676834(-)$1	1	77	81	12.0000
))))	chr3:184052732-184053014(+)$1	1	230	234	12.0000
.).)	chr11:64846928-64847173(-)$1	1	55	59	12.0000
))))	chr11:61088966-61089213(-)$1	1	228	232	12.0000
))))	chr17:80422096-80422381(+)$1	1	69	73	12.0000
)).(	chrX:153590509-153590742(-)$1	1	74	78	12.0000
))))	chrX:153592631-153592840(-)$1	1	123	127	12.0000
((((	chr7:99693304-99693536(-)$1	1	47	51	12.0000
....	chr3:184044240-184044495(+)$1	1	113	117	12.0000
((((	chr10:129924330-129924584(-)$1	1	29	33	12.0000
)).)	chr5:154173591-154173829(+)$1	1	111	115	12.0000
((((	chrX:153582883-153583090(-)$1	1	182	186	12.0000
))))	chr3:184037458-184037690(+)$1	1	118	122	12.0000
))).	chr2:96950820-96951079(-)$1	1	113	117	12.0000
))))	chr7:72936135-72936375(-)$1	1	163	167	12.0000
((.(	chr3:33840062-33840330(+)$1	1	3	7	12.0000
))))	chr3:184037407-184037640(+)$1	1	169	173	12.0000
))..	chrX:153581898-153582122(-)$1	1	214	218	12.0000

#PSSM
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_transcript_m1_run2.nuc.txt

#NT
CUUGUUA	chr14:21678813-21679077(-)$1	264	4	11	12.2096
CUUUUUU	chr12:98994911-98995157(+)$1	246	27	34	13.2580
CUUAUUU	chr6:31654702-31655027(-)$1	325	98	105	13.0161
CAUGUUU	chr11:32615311-32615586(+)$1	275	263	270	12.5322
Cuuuuuu	chr10:72187631-72187876(+)$1	245	83	90	13.2580
cuugugu	chr1:158580627-158580931(-)$1	304	10	17	12.4516
CUUGUUU	chr11:73965491-73965786(+)$1	295	222	229	16.7258
CUUGUCU	chr3:49397446-49397704(-)$1	258	51	58	12.2096
CUGGUUU	chr5:145493463-145493758(-)$1	295	114	121	12.3709
UUUGUUU	chr8:11696378-11696632(+)$1	254	168	175	13.5806
CUUGGUU	chr2:101622318-101622564(+)$1	246	51	58	12.5322
CUGGUUU	chr22:50039490-50039718(-)$1	228	51	58	12.3709
CUUGUUU	chr12:104341507-104341726(+)$1	219	5	12	16.7258
CUUGGUU	chr20:32868331-32868592(-)$1	261	124	131	12.5322
CUUGUGU	chr2:217070164-217070411(+)$1	247	212	219	12.4516
CCUGUUU	chr13:107195883-107196168(-)$1	285	58	65	12.4516
AUUGUUU	chr1:8921151-8921365(-)$1	214	173	180	13.0161
CUUCUUU	chr11:85692875-85693141(-)$1	266	252	259	13.0967
UUUGUUU	chr9:75773340-75773597(+)$1	257	60	67	13.5806
CUUGGUU	chr12:123994566-123994894(-)$1	328	219	226	12.5322
CUUGUUA	chr14:102547701-102547922(-)$1	221	199	206	12.2096
CUUGUUU	chr7:7676357-7676706(-)$1	349	138	145	16.7258
CCUGUUU	chr1:150532726-150533005(+)$1	279	247	254	12.4516
CUUAUUU	chr3:186506959-186507218(+)$1	259	90	97	13.0161
GUUGUUU	chr15:64668900-64669178(-)$1	278	9	16	13.0967
CUUUUUU	chr3:129023633-129023953(+)$1	320	171	178	13.2580
CUUGUUU	chr7:107559931-107560218(+)$1	287	269	276	16.7258
UUUGUUU	chr19:39967065-39967371(+)$1	306	89	96	13.5806
CUugugu	chr17:40462632-40462891(+)$1	259	162	169	12.4516
CUGGUUU	chr15:85213012-85213254(-)$1	242	124	131	12.3709
CUUUUUU	chr7:127732102-127732392(+)$1	290	270	277	13.2580
CUUGUUU	chr22:38879378-38879614(-)$1	236	126	133	16.7258
UUUGUUU	chr12:98994886-98995111(+)$1	225	17	24	13.5806
CUUCUUU	chr5:130495034-130495290(-)$1	256	174	181	13.0967
UUUGUUU	chr16:70605653-70605914(+)$1	261	102	109	13.5806
CUUCUUU	chr17:77084315-77084622(+)$1	307	80	87	13.0967
UUUGUUU	chr1:46782250-46782507(+)$1	257	80	87	13.5806
CUUUUUu	chr1:109944413-109944681(-)$1	268	240	247	13.2580
CUUGUUU	chr12:131360571-131360862(+)$1	291	185	192	16.7258
CUUAUUU	chr12:54677500-54677722(+)$1	222	11	18	13.0161
CUGGUUU	chr1:45976672-45976915(-)$1	243	123	130	12.3709
CUUGUUC	chr1:160259017-160259295(-)$1	278	266	273	12.2096
Cuuuuuu	chr3:128996366-128996624(+)$1	258	77	84	13.2580
UUUGUUU	chr1:112003553-112003820(+)$1	267	190	197	13.5806
CUUGAUU	chr12:57031906-57032153(-)$1	247	128	135	12.2903
CUUGCUU	chr2:232037216-232037538(+)$1	322	39	46	12.2903
CAUGUUU	chr10:70551042-70551339(+)$1	297	62	69	12.5322
CGUGUUU	chr19:18417999-18418245(-)$1	246	86	93	12.4516
CUUGUUU	chrX:154005736-154005999(+)$1	263	21	28	16.7258
CUUCUUU	chr17:48562899-48563359(+)$1	460	361	368	13.0967
GUUGUUU	chr2:170668356-170668586(+)$1	230	36	43	13.0967
AUUGUUU	chr2:198256859-198257110(-)$1	251	88	95	13.0161
UUUGUUU	chr4:120987814-120988069(-)$1	255	161	168	13.5806
UUUGUUU	chr2:132068587-132068875(+)$1	288	222	229	13.5806
GUUGUUU	chr17:79477166-79477392(-)$1	226	95	102	13.0967
CUUGGUU	chr12:54624822-54625112(-)$1	290	157	164	12.5322
CUUGUUU	chr13:29252090-29252402(+)$1	312	182	189	16.7258
CUUGUUC	chr3:12624641-12624888(+)$1	247	143	150	12.2096
CAUGUUU	chr10:76990930-76991222(+)$1	292	115	122	12.5322
CUUGUUU	chr11:125442261-125442553(+)$1	292	214	221	16.7258
CUUGUGU	chr2:55461974-55462184(+)$1	210	7	14	12.4516

#otherMatches

#Struct PSSM
:eeeee[	chr4:76570352-76570645(-)$1	293	75	82	12.4516
eeeeell	chr14:21678813-21679077(-)$1	264	4	11	12.2096
eeee[ff	chr12:98994911-98995157(+)$1	246	27	34	13.2580
bqqqqqq	chr6:31654702-31655027(-)$1	325	98	105	13.0161
CCC~~~~	chr11:32615311-32615586(+)$1	275	263	270	12.5322
+++++++	chr10:72187631-72187876(+)$1	245	83	90	13.2580
EEE{CCC	chr1:158580627-158580931(-)$1	304	10	17	12.4516
^^^^^^^	chr11:73965491-73965786(+)$1	295	222	229	16.7258
eeeee""	chr3:49397446-49397704(-)$1	258	51	58	12.2096
ffffmmm	chr5:145493463-145493758(-)$1	295	114	121	12.3709
^^^^^^^	chr8:11696378-11696632(+)$1	254	168	175	13.5806
cccoooo	chr2:101622318-101622564(+)$1	246	51	58	12.5322
!eeeee'	chr22:50039490-50039718(-)$1	228	51	58	12.3709
EKKCCCK	chr12:104341507-104341726(+)$1	219	5	12	16.7258
333====	chr20:32868331-32868592(-)$1	261	124	131	12.5322
:::::::	chr2:217070164-217070411(+)$1	247	212	219	12.4516
]bb]fff	chr13:107195883-107196168(-)$1	285	58	65	12.4516
ttttttt	chr1:8921151-8921365(-)$1	214	173	180	13.0161
GGGGGGZ	chr11:85692875-85693141(-)$1	266	252	259	13.0967
ppppppp	chr9:75773340-75773597(+)$1	257	60	67	13.5806
coooooo	chr12:123994566-123994894(-)$1	328	219	226	12.5322
JJJJJJ:	chr14:102547701-102547922(-)$1	221	199	206	12.2096
::::::G	chr7:7676357-7676706(-)$1	349	138	145	16.7258
EEEEE??	chr1:150532726-150533005(+)$1	279	247	254	12.4516
:ccc!!b	chr3:186506959-186507218(+)$1	259	90	97	13.0161
:FFFFFF	chr15:64668900-64669178(-)$1	278	9	16	13.0967
ooooocc	chr3:129023633-129023953(+)$1	320	171	178	13.2580
IIIIIII	chr7:107559931-107560218(+)$1	287	269	276	16.7258
^^^^^^^	chr19:39967065-39967371(+)$1	306	89	96	13.5806
=mmmm==	chr17:40462632-40462891(+)$1	259	162	169	12.4516
dbbffff	chr15:85213012-85213254(-)$1	242	124	131	12.3709
hhhhhhh	chr7:127732102-127732392(+)$1	290	270	277	13.2580
ee55555	chr22:38879378-38879614(-)$1	236	126	133	16.7258
dqqqqqq	chr12:98994886-98995111(+)$1	225	17	24	13.5806
gggg!!b	chr5:130495034-130495290(-)$1	256	174	181	13.0967
:::::::	chr16:70605653-70605914(+)$1	261	102	109	13.5806
EEDDDDL	chr17:77084315-77084622(+)$1	307	80	87	13.0967
e22a555	chr1:46782250-46782507(+)$1	257	80	87	13.5806
IIIIIII	chr1:109944413-109944681(-)$1	268	240	247	13.2580
:FFFFFF	chr12:131360571-131360862(+)$1	291	185	192	16.7258
C::::::	chr12:54677500-54677722(+)$1	222	11	18	13.0161
iccc[dd	chr1:45976672-45976915(-)$1	243	123	130	12.3709
HHHHHHH	chr1:160259017-160259295(-)$1	278	266	273	12.2096
:::::::	chr3:128996366-128996624(+)$1	258	77	84	13.2580
oooofff	chr1:112003553-112003820(+)$1	267	190	197	13.5806
:::bb!!	chr12:57031906-57032153(-)$1	247	128	135	12.2903
dddd"""	chr2:232037216-232037538(+)$1	322	39	46	12.2903
fffffff	chr10:70551042-70551339(+)$1	297	62	69	12.5322
]eeeee3	chr19:18417999-18418245(-)$1	246	86	93	12.4516
ttttttt	chrX:154005736-154005999(+)$1	263	21	28	16.7258
5ffffff	chr17:48562899-48563359(+)$1	460	361	368	13.0967
HHH{CCC	chr2:170668356-170668586(+)$1	230	36	43	13.0967
^^^ffff	chr2:198256859-198257110(-)$1	251	88	95	13.0161
fff]fff	chr4:120987814-120988069(-)$1	255	161	168	13.5806
!!cccmm	chr2:132068587-132068875(+)$1	288	222	229	13.5806
cnnnnnc	chr17:79477166-79477392(-)$1	226	95	102	13.0967
IIIII~~	chr12:54624822-54625112(-)$1	290	157	164	12.5322
CC:::gg	chr13:29252090-29252402(+)$1	312	182	189	16.7258
hhhhlll	chr3:12624641-12624888(+)$1	247	143	150	12.2096
G{EEEEE	chr10:76990930-76991222(+)$1	292	115	122	12.5322
eeeemmm	chr11:125442261-125442553(+)$1	292	214	221	16.7258
iiiiiii	chr2:55461974-55462184(+)$1	210	7	14	12.4516

#DB
.(((((.	chr4:76570352-76570645(-)$1	1	75	82	12.4516
(((((..	chr14:21678813-21679077(-)$1	1	4	11	12.2096
((((.((	chr12:98994911-98995157(+)$1	1	27	34	13.2580
(......	chr6:31654702-31655027(-)$1	1	98	105	13.0161
)))....	chr11:32615311-32615586(+)$1	1	263	270	12.5322
.......	chr10:72187631-72187876(+)$1	1	83	90	13.2580
(((.(((	chr1:158580627-158580931(-)$1	1	10	17	12.4516
.......	chr11:73965491-73965786(+)$1	1	222	229	16.7258
(((((..	chr3:49397446-49397704(-)$1	1	51	58	12.2096
((((...	chr5:145493463-145493758(-)$1	1	114	121	12.3709
.......	chr8:11696378-11696632(+)$1	1	168	175	13.5806
(((....	chr2:101622318-101622564(+)$1	1	51	58	12.5322
.(((((.	chr22:50039490-50039718(-)$1	1	51	58	12.3709
(..(((.	chr12:104341507-104341726(+)$1	1	5	12	16.7258
...))))	chr20:32868331-32868592(-)$1	1	124	131	12.5322
.......	chr2:217070164-217070411(+)$1	1	212	219	12.4516
.)).)))	chr13:107195883-107196168(-)$1	1	58	65	12.4516
.......	chr1:8921151-8921365(-)$1	1	173	180	13.0161
)))))).	chr11:85692875-85693141(-)$1	1	252	259	13.0967
.......	chr9:75773340-75773597(+)$1	1	60	67	13.5806
(......	chr12:123994566-123994894(-)$1	1	219	226	12.5322
)))))).	chr14:102547701-102547922(-)$1	1	199	206	12.2096
......)	chr7:7676357-7676706(-)$1	1	138	145	16.7258
)))))..	chr1:150532726-150533005(+)$1	1	247	254	12.4516
.(((..(	chr3:186506959-186507218(+)$1	1	90	97	13.0161
.((((((	chr15:64668900-64669178(-)$1	1	9	16	13.0967
.....))	chr3:129023633-129023953(+)$1	1	171	178	13.2580
)))))))	chr7:107559931-107560218(+)$1	1	269	276	16.7258
.......	chr19:39967065-39967371(+)$1	1	89	96	13.5806
(....))	chr17:40462632-40462891(+)$1	1	162	169	12.4516
(((((((	chr15:85213012-85213254(-)$1	1	124	131	12.3709
(((((((	chr7:127732102-127732392(+)$1	1	270	277	13.2580
)).....	chr22:38879378-38879614(-)$1	1	126	133	16.7258
(......	chr12:98994886-98995111(+)$1	1	17	24	13.5806
((((..(	chr5:130495034-130495290(-)$1	1	174	181	13.0967
.......	chr16:70605653-70605914(+)$1	1	102	109	13.5806
((((((.	chr17:77084315-77084622(+)$1	1	80	87	13.0967
)..)...	chr1:46782250-46782507(+)$1	1	80	87	13.5806
)))))))	chr1:109944413-109944681(-)$1	1	240	247	13.2580
.))))))	chr12:131360571-131360862(+)$1	1	185	192	16.7258
(......	chr12:54677500-54677722(+)$1	1	11	18	13.0161
((((.((	chr1:45976672-45976915(-)$1	1	123	130	12.3709
)))))))	chr1:160259017-160259295(-)$1	1	266	273	12.2096
.......	chr3:128996366-128996624(+)$1	1	77	84	13.2580
....)))	chr1:112003553-112003820(+)$1	1	190	197	13.5806
...((..	chr12:57031906-57032153(-)$1	1	128	135	12.2903
((((...	chr2:232037216-232037538(+)$1	1	39	46	12.2903
(((((((	chr10:70551042-70551339(+)$1	1	62	69	12.5322
.))))).	chr19:18417999-18418245(-)$1	1	86	93	12.4516
.......	chrX:154005736-154005999(+)$1	1	21	28	16.7258
.))))))	chr17:48562899-48563359(+)$1	1	361	368	13.0967
(((.(((	chr2:170668356-170668586(+)$1	1	36	43	13.0967
...))))	chr2:198256859-198257110(-)$1	1	88	95	13.0161
))).)))	chr4:120987814-120988069(-)$1	1	161	168	13.5806
..(((..	chr2:132068587-132068875(+)$1	1	222	229	13.5806
(.....)	chr17:79477166-79477392(-)$1	1	95	102	13.0967
)))))..	chr12:54624822-54625112(-)$1	1	157	164	12.5322
((...((	chr13:29252090-29252402(+)$1	1	182	189	16.7258
((((...	chr3:12624641-12624888(+)$1	1	143	150	12.2096
(.(((((	chr10:76990930-76991222(+)$1	1	115	122	12.5322
((((...	chr11:125442261-125442553(+)$1	1	214	221	16.7258
(((((((	chr2:55461974-55462184(+)$1	1	7	14	12.4516

#PSSM
C : 0.75	U : 0.14	G : 0.04	A : 0.03	c : 0.01	
U : 0.83	A : 0.04	u : 0.04	G : 0.03	C : 0.03	
U : 0.87	u : 0.06	G : 0.06	
G : 0.75	U : 0.06	C : 0.06	A : 0.04	u : 0.03	g : 0.03	
U : 0.83	u : 0.06	G : 0.06	A : 0.01	C : 0.01	
U : 0.88	u : 0.03	g : 0.03	G : 0.03	C : 0.01	
U : 0.85	u : 0.08	A : 0.03	C : 0.03	

#score	831.5161290322577
#seq	62
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_transcript_m3_run2.nuc.txt

#NT
UUCC	chr1:59154649-59154902(-)$1	253	0	4	11.9999
UUCC	chr12:6857761-6858028(-)$1	267	37	41	11.9999
UUCC	chr19:56174873-56175114(+)$1	241	98	102	11.9999
uucc	chr6:36507843-36508092(-)$1	249	27	31	11.9999
UUCC	chr6:168314264-168314524(+)$1	260	94	98	11.9999
UUCC	chr6:131201099-131201350(-)$1	251	9	13	11.9999
UUCC	chr7:26230728-26230939(-)$1	211	61	65	11.9999
UUCC	chr10:113921355-113921602(-)$1	247	101	105	11.9999
UUCC	chr14:21936736-21936983(-)$1	247	87	91	11.9999
UUCC	chr12:64838729-64838984(+)$1	255	110	114	11.9999
UUCC	chr14:31493096-31493371(-)$1	275	107	111	11.9999
UUCC	chr19:54972322-54972619(+)$1	297	264	268	11.9999
UUCC	chr2:216245706-216245912(-)$1	206	155	159	11.9999
UUCC	chr2:62115235-62115507(-)$1	272	74	78	11.9999
UUCC	chr16:75033388-75033627(+)$1	239	9	13	11.9999
UUCC	chrX:30715715-30715994(+)$1	279	207	211	11.9999
UUCC	chr21:46285456-46285684(-)$1	228	6	10	11.9999
UUCC	chr11:46404295-46404537(+)$1	242	76	80	11.9999
UUCC	chr3:132297752-132298014(-)$1	262	35	39	11.9999
UUCC	chr6:30622984-30623228(-)$1	244	108	112	11.9999
UUCC	chr16:87397236-87397469(-)$1	233	81	85	11.9999
UUCC	chr12:72004729-72004985(-)$1	256	2	6	11.9999
UUCC	chr2:216274425-216274631(-)$1	206	14	18	11.9999
UUCC	chr19:6714359-6714570(-)$1	211	93	97	11.9999
UUCC	chr3:88107688-88107925(-)$1	237	26	30	11.9999
UUCC	chr6:158453995-158454244(+)$1	249	30	34	11.9999
uucc	chr2:230672152-230672398(-)$1	246	217	221	11.9999
UUCC	chr5:72359550-72359829(+)$1	279	102	106	11.9999
UUCC	chr2:152293238-152293500(+)$1	262	106	110	11.9999
uucc	chr13:52743296-52743547(-)$1	251	186	190	11.9999
UUCC	chr6:4064484-4064745(+)$1	261	89	93	11.9999
UUCC	chr20:61594511-61594782(+)$1	271	190	194	11.9999
UUCC	chr11:65201842-65202046(+)$1	204	3	7	11.9999
UUCC	chr12:53926264-53926521(-)$1	257	75	79	11.9999
UUCC	chr3:171830649-171830902(+)$1	253	157	161	11.9999
UUCC	chr20:2636860-2637101(+)$1	241	19	23	11.9999
UUCC	chr12:7252221-7252475(-)$1	254	6	10	11.9999
UUCC	chr22:29684712-29684966(+)$1	254	163	167	11.9999
UUCC	chr20:39985900-39986152(+)$1	252	23	27	11.9999
UUCC	chr16:28847724-28848000(+)$1	276	223	227	11.9999
UUCC	chr14:39618384-39618654(-)$1	270	83	87	11.9999
UUCC	chr21:18940397-18940606(+)$1	209	13	17	11.9999
UUCC	chr19:54972869-54973120(+)$1	251	88	92	11.9999
UUCC	chr1:16892147-16892411(-)$1	264	24	28	11.9999
UUCC	chr13:111932739-111933058(+)$1	319	110	114	11.9999
UUCC	chr19:19102202-19102454(-)$1	252	30	34	11.9999
UUCC	chr19:54972491-54972729(+)$1	238	95	99	11.9999
uucc	chr19:52597087-52597367(-)$1	280	186	190	11.9999
UUCC	chr14:24620002-24620257(+)$1	255	19	23	11.9999
UUCC	chr15:63353727-63354019(+)$1	292	21	25	11.9999
UUCC	chr17:48829441-48829704(+)$1	263	7	11	11.9999
UUCC	chr16:58619262-58619511(-)$1	249	89	93	11.9999
UUCC	chr20:62572416-62572633(-)$1	217	50	54	11.9999
UUCC	chr3:101575796-101576064(+)$1	268	96	100	11.9999
uucc	chr16:30000758-30001007(+)$1	249	64	68	11.9999
UUCC	chr16:87397209-87397436(-)$1	227	48	52	11.9999
UUCC	chr3:172013026-172013277(+)$1	251	118	122	11.9999
UUCC	chr1:109240422-109240741(+)$1	319	1	5	11.9999
UUCC	chrX:73444282-73444501(-)$1	219	46	50	11.9999
UUCC	chr19:14038601-14038839(+)$1	238	63	67	11.9999
UUCC	chr19:54971693-54971956(+)$1	263	253	257	11.9999
UUCC	chr20:31606328-31606533(+)$1	205	93	97	11.9999
UUCC	chr20:61597091-61597327(+)$1	236	84	88	11.9999
UUCC	chr2:219557192-219557450(+)$1	258	2	6	11.9999
UUCC	chr14:21737254-21737556(-)$1	302	183	187	11.9999
UUCC	chr3:176748175-176748454(-)$1	279	54	58	11.9999
UUCC	chr2:233674316-233674570(+)$1	254	91	95	11.9999
UUCC	chr4:728367-728632(+)$1	265	105	109	11.9999
uucc	chr20:17924702-17924981(-)$1	279	91	95	11.9999
UUCC	chr16:24804677-24804941(+)$1	264	58	62	11.9999
UUCC	chr6:33162684-33162948(-)$1	264	94	98	11.9999
UUCC	chr16:70010508-70010734(-)$1	226	78	82	11.9999
UUCC	chr3:71107712-71107958(-)$1	246	104	108	11.9999
UUCC	chr11:102056639-102056892(+)$1	253	115	119	11.9999

#otherMatches

#Struct PSSM
::::	chr2:204261487-204261732(+)$1	245	10	14	11.9999
:::E	chr1:59154649-59154902(-)$1	253	0	4	11.9999
FFFF	chr12:6857761-6858028(-)$1	267	37	41	11.9999
:::C	chr19:56174873-56175114(+)$1	241	98	102	11.9999
hhhh	chr6:36507843-36508092(-)$1	249	27	31	11.9999
EEDD	chr6:168314264-168314524(+)$1	260	94	98	11.9999
::dd	chr6:131201099-131201350(-)$1	251	9	13	11.9999
ggge	chr7:26230728-26230939(-)$1	211	61	65	11.9999
NNNF	chr10:113921355-113921602(-)$1	247	101	105	11.9999
KCCC	chr14:21936736-21936983(-)$1	247	87	91	11.9999
::::	chr12:64838729-64838984(+)$1	255	110	114	11.9999
dqqq	chr14:31493096-31493371(-)$1	275	107	111	11.9999
[fff	chr19:54972322-54972619(+)$1	297	264	268	11.9999
2ccc	chr2:216245706-216245912(-)$1	206	155	159	11.9999
c[cc	chr2:62115235-62115507(-)$1	272	74	78	11.9999
:eee	chr16:75033388-75033627(+)$1	239	9	13	11.9999
oood	chrX:30715715-30715994(+)$1	279	207	211	11.9999
FFFF	chr21:46285456-46285684(-)$1	228	6	10	11.9999
:CCC	chr11:46404295-46404537(+)$1	242	76	80	11.9999
FMMM	chr3:132297752-132298014(-)$1	262	35	39	11.9999
55hh	chr6:30622984-30623228(-)$1	244	108	112	11.9999
::::	chr16:87397236-87397469(-)$1	233	81	85	11.9999
ddnn	chr12:72004729-72004985(-)$1	256	2	6	11.9999
CCGG	chr2:216274425-216274631(-)$1	206	14	18	11.9999
::::	chr19:6714359-6714570(-)$1	211	93	97	11.9999
eeee	chr3:88107688-88107925(-)$1	237	26	30	11.9999
^^^f	chr6:158453995-158454244(+)$1	249	30	34	11.9999
hhhh	chr2:230672152-230672398(-)$1	246	217	221	11.9999
::::	chr5:72359550-72359829(+)$1	279	102	106	11.9999
eees	chr2:152293238-152293500(+)$1	262	106	110	11.9999
nnng	chr13:52743296-52743547(-)$1	251	186	190	11.9999
^^^^	chr6:4064484-4064745(+)$1	261	89	93	11.9999
blll	chr20:61594511-61594782(+)$1	271	190	194	11.9999
::ff	chr11:65201842-65202046(+)$1	204	3	7	11.9999
ffff	chr12:53926264-53926521(-)$1	257	75	79	11.9999
eeee	chr3:171830649-171830902(+)$1	253	157	161	11.9999
!!cc	chr20:2636860-2637101(+)$1	241	19	23	11.9999
pppp	chr12:7252221-7252475(-)$1	254	6	10	11.9999
====	chr22:29684712-29684966(+)$1	254	163	167	11.9999
oooo	chr20:39985900-39986152(+)$1	252	23	27	11.9999
GGGG	chr16:28847724-28848000(+)$1	276	223	227	11.9999
dd::	chr14:39618384-39618654(-)$1	270	83	87	11.9999
::ee	chr21:18940397-18940606(+)$1	209	13	17	11.9999
:fff	chr19:54972869-54973120(+)$1	251	88	92	11.9999
hhhh	chr1:16892147-16892411(-)$1	264	24	28	11.9999
====	chr13:111932739-111933058(+)$1	319	110	114	11.9999
9999	chr19:19102202-19102454(-)$1	252	30	34	11.9999
cc::	chr19:54972491-54972729(+)$1	238	95	99	11.9999
:::B	chr19:52597087-52597367(-)$1	280	186	190	11.9999
EEEE	chr14:24620002-24620257(+)$1	255	19	23	11.9999
[ggg	chr15:63353727-63354019(+)$1	292	21	25	11.9999
DD{C	chr17:48829441-48829704(+)$1	263	7	11	11.9999
gg]d	chr16:58619262-58619511(-)$1	249	89	93	11.9999
7ggg	chr20:62572416-62572633(-)$1	217	50	54	11.9999
yccc	chr3:101575796-101576064(+)$1	268	96	100	11.9999
::::	chr16:30000758-30001007(+)$1	249	64	68	11.9999
::::	chr16:87397209-87397436(-)$1	227	48	52	11.9999
%%bb	chr3:172013026-172013277(+)$1	251	118	122	11.9999
::::	chr1:109240422-109240741(+)$1	319	1	5	11.9999
&&&&	chrX:73444282-73444501(-)$1	219	46	50	11.9999
FFFF	chr19:14038601-14038839(+)$1	238	63	67	11.9999
HHHH	chr19:54971693-54971956(+)$1	263	253	257	11.9999
hhhh	chr20:31606328-31606533(+)$1	205	93	97	11.9999
gggg	chr20:61597091-61597327(+)$1	236	84	88	11.9999
::::	chr2:219557192-219557450(+)$1	258	2	6	11.9999
eeee	chr14:21737254-21737556(-)$1	302	183	187	11.9999
GGG:	chr3:176748175-176748454(-)$1	279	54	58	11.9999
eeee	chr2:233674316-233674570(+)$1	254	91	95	11.9999
rrrr	chr4:728367-728632(+)$1	265	105	109	11.9999
ssss	chr20:17924702-17924981(-)$1	279	91	95	11.9999
::ff	chr16:24804677-24804941(+)$1	264	58	62	11.9999
FFFF	chr6:33162684-33162948(-)$1	264	94	98	11.9999
d444	chr16:70010508-70010734(-)$1	226	78	82	11.9999
EEEE	chr3:71107712-71107958(-)$1	246	104	108	11.9999
dfff	chr11:102056639-102056892(+)$1	253	115	119	11.9999

#DB
....	chr2:204261487-204261732(+)$1	1	10	14	11.9999
...(	chr1:59154649-59154902(-)$1	1	0	4	11.9999
((((	chr12:6857761-6858028(-)$1	1	37	41	11.9999
...(	chr19:56174873-56175114(+)$1	1	98	102	11.9999
((((	chr6:36507843-36508092(-)$1	1	27	31	11.9999
((((	chr6:168314264-168314524(+)$1	1	94	98	11.9999
..((	chr6:131201099-131201350(-)$1	1	9	13	11.9999
)))(	chr7:26230728-26230939(-)$1	1	61	65	11.9999
...(	chr10:113921355-113921602(-)$1	1	101	105	11.9999
.(((	chr14:21936736-21936983(-)$1	1	87	91	11.9999
....	chr12:64838729-64838984(+)$1	1	110	114	11.9999
(...	chr14:31493096-31493371(-)$1	1	107	111	11.9999
.(((	chr19:54972322-54972619(+)$1	1	264	268	11.9999
.)))	chr2:216245706-216245912(-)$1	1	155	159	11.9999
(.((	chr2:62115235-62115507(-)$1	1	74	78	11.9999
.(((	chr16:75033388-75033627(+)$1	1	9	13	11.9999
...)	chrX:30715715-30715994(+)$1	1	207	211	11.9999
((((	chr21:46285456-46285684(-)$1	1	6	10	11.9999
.)))	chr11:46404295-46404537(+)$1	1	76	80	11.9999
(...	chr3:132297752-132298014(-)$1	1	35	39	11.9999
..))	chr6:30622984-30623228(-)$1	1	108	112	11.9999
....	chr16:87397236-87397469(-)$1	1	81	85	11.9999
((..	chr12:72004729-72004985(-)$1	1	2	6	11.9999
((((	chr2:216274425-216274631(-)$1	1	14	18	11.9999
....	chr19:6714359-6714570(-)$1	1	93	97	11.9999
((((	chr3:88107688-88107925(-)$1	1	26	30	11.9999
...)	chr6:158453995-158454244(+)$1	1	30	34	11.9999
))))	chr2:230672152-230672398(-)$1	1	217	221	11.9999
....	chr5:72359550-72359829(+)$1	1	102	106	11.9999
(((.	chr2:152293238-152293500(+)$1	1	106	110	11.9999
...)	chr13:52743296-52743547(-)$1	1	186	190	11.9999
....	chr6:4064484-4064745(+)$1	1	89	93	11.9999
(...	chr20:61594511-61594782(+)$1	1	190	194	11.9999
..((	chr11:65201842-65202046(+)$1	1	3	7	11.9999
))))	chr12:53926264-53926521(-)$1	1	75	79	11.9999
))))	chr3:171830649-171830902(+)$1	1	157	161	11.9999
..((	chr20:2636860-2637101(+)$1	1	19	23	11.9999
....	chr12:7252221-7252475(-)$1	1	6	10	11.9999
((((	chr22:29684712-29684966(+)$1	1	163	167	11.9999
....	chr20:39985900-39986152(+)$1	1	23	27	11.9999
))))	chr16:28847724-28848000(+)$1	1	223	227	11.9999
))..	chr14:39618384-39618654(-)$1	1	83	87	11.9999
..((	chr21:18940397-18940606(+)$1	1	13	17	11.9999
.(((	chr19:54972869-54973120(+)$1	1	88	92	11.9999
((((	chr1:16892147-16892411(-)$1	1	24	28	11.9999
))))	chr13:111932739-111933058(+)$1	1	110	114	11.9999
....	chr19:19102202-19102454(-)$1	1	30	34	11.9999
))..	chr19:54972491-54972729(+)$1	1	95	99	11.9999
...)	chr19:52597087-52597367(-)$1	1	186	190	11.9999
((((	chr14:24620002-24620257(+)$1	1	19	23	11.9999
.(((	chr15:63353727-63354019(+)$1	1	21	25	11.9999
((.(	chr17:48829441-48829704(+)$1	1	7	11	11.9999
)).)	chr16:58619262-58619511(-)$1	1	89	93	11.9999
.)))	chr20:62572416-62572633(-)$1	1	50	54	11.9999
.)))	chr3:101575796-101576064(+)$1	1	96	100	11.9999
....	chr16:30000758-30001007(+)$1	1	64	68	11.9999
....	chr16:87397209-87397436(-)$1	1	48	52	11.9999
..((	chr3:172013026-172013277(+)$1	1	118	122	11.9999
....	chr1:109240422-109240741(+)$1	1	1	5	11.9999
....	chrX:73444282-73444501(-)$1	1	46	50	11.9999
((((	chr19:14038601-14038839(+)$1	1	63	67	11.9999
))))	chr19:54971693-54971956(+)$1	1	253	257	11.9999
))))	chr20:31606328-31606533(+)$1	1	93	97	11.9999
))))	chr20:61597091-61597327(+)$1	1	84	88	11.9999
....	chr2:219557192-219557450(+)$1	1	2	6	11.9999
))))	chr14:21737254-21737556(-)$1	1	183	187	11.9999
(((.	chr3:176748175-176748454(-)$1	1	54	58	11.9999
((((	chr2:233674316-233674570(+)$1	1	91	95	11.9999
....	chr4:728367-728632(+)$1	1	105	109	11.9999
....	chr20:17924702-17924981(-)$1	1	91	95	11.9999
..((	chr16:24804677-24804941(+)$1	1	58	62	11.9999
((((	chr6:33162684-33162948(-)$1	1	94	98	11.9999
)...	chr16:70010508-70010734(-)$1	1	78	82	11.9999
((((	chr3:71107712-71107958(-)$1	1	104	108	11.9999
((((	chr11:102056639-102056892(+)$1	1	115	119	11.9999

#PSSM
U : 0.90	u : 0.09	
U : 0.90	u : 0.09	
C : 0.90	c : 0.09	
C : 0.90	c : 0.09	

#score	899.9999999999998
#seq	75
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_UTR_m1_run2.nuc.txt

#NT
cag	chr19:45452363-45452636(+)$1	273	4	7	9.0000
CAG	chr10:5807704-5807976(-)$1	272	8	11	9.0000
CAG	chr1:10441373-10441627(+)$1	254	124	127	9.0000
CAG	chr8:21939711-21939924(+)$1	213	11	14	9.0000
CAG	chr16:88781810-88782128(-)$1	318	160	163	9.0000
CAG	chr7:148700597-148700857(-)$1	260	3	6	9.0000
CAG	chr4:88904053-88904294(+)$1	241	87	90	9.0000
CAG	chr20:2444302-2444527(-)$1	225	25	28	9.0000
CAG	chr16:2569688-2569944(+)$1	256	75	78	9.0000
CAG	chr19:33791740-33791981(-)$1	241	126	129	9.0000
CAG	chr16:88718311-88718572(-)$1	261	5	8	9.0000
CAG	chr2:219679818-219680057(+)$1	239	12	15	9.0000
CAG	chr19:10800299-10800547(+)$1	248	15	18	9.0000
CAG	chr7:150035604-150035883(-)$1	279	34	37	9.0000
CAG	chr8:145067170-145067426(+)$1	256	24	27	9.0000
CAG	chr11:2965688-2965929(-)$1	241	9	12	9.0000
CAG	chr3:48445438-48445679(-)$1	241	10	13	9.0000
CAG	chr10:120927301-120927585(-)$1	284	119	122	9.0000
CAG	chr3:141644468-141644746(+)$1	278	15	18	9.0000
CAG	chr19:35557295-35557540(+)$1	245	22	25	9.0000
CAG	chr22:38202677-38202900(+)$1	223	0	3	9.0000
CAG	chr3:100467434-100467719(+)$1	285	29	32	9.0000
CAG	chr19:811527-811746(+)$1	219	114	117	9.0000
CAG	chr5:135399077-135399419(+)$1	342	59	62	9.0000
CAG	chr17:7757846-7758112(+)$1	266	24	27	9.0000
CAG	chr17:76168304-76168537(+)$1	233	9	12	9.0000
CAG	chr19:54704927-54705170(+)$1	243	54	57	9.0000
CAG	chr7:105731336-105731587(-)$1	251	130	133	9.0000
CAG	chr8:126034078-126034307(+)$1	229	27	30	9.0000
CAG	chr19:39221000-39221226(+)$1	226	8	11	9.0000
CAG	chr17:1680647-1680864(+)$1	217	9	12	9.0000
CAG	chr1:23409772-23410021(+)$1	249	2	5	9.0000
CAG	chr16:30786222-30786503(+)$1	281	7	10	9.0000
CAG	chr20:23614398-23614621(-)$1	223	3	6	9.0000
CAG	chr19:13054974-13055215(+)$1	241	71	74	9.0000
CAG	chr19:36149455-36149728(+)$1	273	37	40	9.0000
CAG	chr19:49995006-49995261(+)$1	255	31	34	9.0000
CAG	chr17:79845642-79845886(-)$1	244	62	65	9.0000
CAG	chr12:106632230-106632478(-)$1	248	12	15	9.0000
CAG	chr14:24114350-24114619(+)$1	269	11	14	9.0000
CAG	chr14:69846806-69847064(-)$1	258	79	82	9.0000
CAG	chr6:43148965-43149258(+)$1	293	18	21	9.0000
CAG	chr7:100400257-100400506(-)$1	249	76	79	9.0000
CAG	chr20:25206971-25207227(+)$1	256	116	119	9.0000
CAG	chr17:79780614-79780853(-)$1	239	10	13	9.0000
CAG	chr6:64290886-64291109(+)$1	223	120	123	9.0000
CAG	chr20:3734295-3734596(-)$1	301	104	107	9.0000
CAG	chr1:55529595-55529844(+)$1	249	11	14	9.0000
CAG	chr17:4927739-4928034(+)$1	295	16	19	9.0000
CAG	chr20:62369585-62369859(+)$1	274	2	5	9.0000
CAG	chr3:48445724-48446003(-)$1	279	3	6	9.0000
CAG	chr20:24943652-24943908(-)$1	256	57	60	9.0000
CAG	chr5:177022785-177023072(+)$1	287	9	12	9.0000
cag	chr6:30593812-30594173(+)$1	361	3	6	9.0000
CAG	chr16:2820982-2821287(+)$1	305	120	123	9.0000
CAG	chr12:46751921-46752195(-)$1	274	229	232	9.0000
CAG	chr6:163994538-163994808(+)$1	270	108	111	9.0000
CAG	chr9:116822404-116822638(-)$1	234	14	17	9.0000
CAG	chr4:1810240-1810500(+)$1	260	158	161	9.0000
CAG	chr10:54076626-54076906(+)$1	280	46	49	9.0000
CAG	chr10:15254202-15254507(-)$1	305	204	207	9.0000
CAG	chr1:155106878-155107161(+)$1	283	38	41	9.0000
CAG	chr11:116703455-116703709(+)$1	254	45	48	9.0000
CAG	chr12:56119545-56119788(-)$1	243	16	19	9.0000
CAG	chr10:7791276-7791503(+)$1	227	79	82	9.0000
CAG	chr17:76168236-76168486(+)$1	250	51	54	9.0000
CAG	chr16:23701296-23701608(+)$1	312	6	9	9.0000
CAG	chr6:64291029-64291279(+)$1	250	81	84	9.0000
CAG	chr1:201104428-201104733(-)$1	305	7	10	9.0000
CAG	chr1:183595931-183596220(-)$1	289	154	157	9.0000
CAG	chr14:24114608-24114843(+)$1	235	152	155	9.0000
CAG	chr5:177022613-177022859(+)$1	246	69	72	9.0000
CAG	chr16:71962691-71962961(+)$1	270	70	73	9.0000
CAG	chr22:39130838-39131075(-)$1	237	40	43	9.0000
CAG	chr17:17715415-17715678(-)$1	263	14	17	9.0000
CAG	chr2:47387244-47387512(-)$1	268	30	33	9.0000
CAG	chr17:80197124-80197335(+)$1	211	71	74	9.0000
CAG	chrX:22012650-22012934(+)$1	284	15	18	9.0000
CAG	chr20:23614308-23614524(-)$1	216	90	93	9.0000
CAG	chr4:74286727-74286932(+)$1	205	78	81	9.0000
CAG	chr12:7311262-7311498(+)$1	236	2	5	9.0000
CAG	chr1:19400940-19401201(-)$1	261	62	65	9.0000
CAG	chrX:20167986-20168303(-)$1	317	22	25	9.0000
CAG	chr3:13358059-13358312(-)$1	253	9	12	9.0000
CAG	chr1:29652695-29652997(+)$1	302	22	25	9.0000
CAG	chr2:219679548-219679857(+)$1	309	7	10	9.0000
CAG	chr20:36146252-36146522(-)$1	270	0	3	9.0000
CAG	chr14:65405954-65406209(-)$1	255	23	26	9.0000
CAG	chr19:14198705-14199007(-)$1	302	13	16	9.0000
CAG	chr17:40931152-40931465(+)$1	313	0	3	9.0000
CAG	chr2:97525792-97526021(-)$1	229	142	145	9.0000
CAG	chr12:27908543-27908889(+)$1	346	169	172	9.0000
CAG	chr20:23614368-23614598(-)$1	230	1	4	9.0000
CAG	chr13:20978058-20978352(-)$1	294	15	18	9.0000
CAG	chr17:53469945-53470183(-)$1	238	3	6	9.0000
CAG	chr20:60884943-60885191(-)$1	248	51	54	9.0000
CAG	chr17:17715343-17715615(-)$1	272	49	52	9.0000
CAG	chr20:32667773-32668063(+)$1	290	28	31	9.0000
CAG	chr10:73576803-73577056(-)$1	253	39	42	9.0000

#otherMatches

#Struct PSSM
FFF	chr1:12035120-12035359(+)$1	239	79	82	9.0000
EEE	chr19:45452363-45452636(+)$1	273	4	7	9.0000
::f	chr10:5807704-5807976(-)$1	272	8	11	9.0000
ddd	chr1:10441373-10441627(+)$1	254	124	127	9.0000
##d	chr8:21939711-21939924(+)$1	213	11	14	9.0000
eee	chr16:88781810-88782128(-)$1	318	160	163	9.0000
c[i	chr7:148700597-148700857(-)$1	260	3	6	9.0000
cce	chr4:88904053-88904294(+)$1	241	87	90	9.0000
ggg	chr20:2444302-2444527(-)$1	225	25	28	9.0000
::C	chr16:2569688-2569944(+)$1	256	75	78	9.0000
CCb	chr19:33791740-33791981(-)$1	241	126	129	9.0000
GGG	chr16:88718311-88718572(-)$1	261	5	8	9.0000
III	chr2:219679818-219680057(+)$1	239	12	15	9.0000
iii	chr19:10800299-10800547(+)$1	248	15	18	9.0000
mmm	chr7:150035604-150035883(-)$1	279	34	37	9.0000
nnn	chr8:145067170-145067426(+)$1	256	24	27	9.0000
dd[	chr11:2965688-2965929(-)$1	241	9	12	9.0000
c[b	chr3:48445438-48445679(-)$1	241	10	13	9.0000
[ii	chr10:120927301-120927585(-)$1	284	119	122	9.0000
dd[	chr3:141644468-141644746(+)$1	278	15	18	9.0000
oee	chr19:35557295-35557540(+)$1	245	22	25	9.0000
bb[	chr22:38202677-38202900(+)$1	223	0	3	9.0000
{EE	chr3:100467434-100467719(+)$1	285	29	32	9.0000
d[c	chr19:811527-811746(+)$1	219	114	117	9.0000
DDD	chr5:135399077-135399419(+)$1	342	59	62	9.0000
FFF	chr17:7757846-7758112(+)$1	266	24	27	9.0000
!!a	chr17:76168304-76168537(+)$1	233	9	12	9.0000
CCC	chr19:54704927-54705170(+)$1	243	54	57	9.0000
dff	chr7:105731336-105731587(-)$1	251	130	133	9.0000
:::	chr8:126034078-126034307(+)$1	229	27	30	9.0000
c:J	chr19:39221000-39221226(+)$1	226	8	11	9.0000
HHH	chr17:1680647-1680864(+)$1	217	9	12	9.0000
DDD	chr1:23409772-23410021(+)$1	249	2	5	9.0000
FFF	chr16:30786222-30786503(+)$1	281	7	10	9.0000
:::	chr20:23614398-23614621(-)$1	223	3	6	9.0000
gbb	chr19:13054974-13055215(+)$1	241	71	74	9.0000
fff	chr19:36149455-36149728(+)$1	273	37	40	9.0000
ccc	chr19:49995006-49995261(+)$1	255	31	34	9.0000
FFF	chr17:79845642-79845886(-)$1	244	62	65	9.0000
EEE	chr12:106632230-106632478(-)$1	248	12	15	9.0000
bb[	chr14:24114350-24114619(+)$1	269	11	14	9.0000
bb"	chr14:69846806-69847064(-)$1	258	79	82	9.0000
fff	chr6:43148965-43149258(+)$1	293	18	21	9.0000
iii	chr7:100400257-100400506(-)$1	249	76	79	9.0000
nnd	chr20:25206971-25207227(+)$1	256	116	119	9.0000
ggg	chr17:79780614-79780853(-)$1	239	10	13	9.0000
hhh	chr6:64290886-64291109(+)$1	223	120	123	9.0000
"""	chr20:3734295-3734596(-)$1	301	104	107	9.0000
CCA	chr1:55529595-55529844(+)$1	249	11	14	9.0000
ddd	chr17:4927739-4928034(+)$1	295	16	19	9.0000
::C	chr20:62369585-62369859(+)$1	274	2	5	9.0000
DDD	chr3:48445724-48446003(-)$1	279	3	6	9.0000
iii	chr20:24943652-24943908(-)$1	256	57	60	9.0000
eee	chr5:177022785-177023072(+)$1	287	9	12	9.0000
b[a	chr6:30593812-30594173(+)$1	361	3	6	9.0000
]cc	chr16:2820982-2821287(+)$1	305	120	123	9.0000
FF}	chr12:46751921-46752195(-)$1	274	229	232	9.0000
eee	chr6:163994538-163994808(+)$1	270	108	111	9.0000
FFF	chr9:116822404-116822638(-)$1	234	14	17	9.0000
nnn	chr4:1810240-1810500(+)$1	260	158	161	9.0000
III	chr10:54076626-54076906(+)$1	280	46	49	9.0000
mee	chr10:15254202-15254507(-)$1	305	204	207	9.0000
dd]	chr1:155106878-155107161(+)$1	283	38	41	9.0000
eee	chr11:116703455-116703709(+)$1	254	45	48	9.0000
iii	chr12:56119545-56119788(-)$1	243	16	19	9.0000
ddd	chr10:7791276-7791503(+)$1	227	79	82	9.0000
:cc	chr17:76168236-76168486(+)$1	250	51	54	9.0000
[cc	chr16:23701296-23701608(+)$1	312	6	9	9.0000
fff	chr6:64291029-64291279(+)$1	250	81	84	9.0000
FFF	chr1:201104428-201104733(-)$1	305	7	10	9.0000
dd5	chr1:183595931-183596220(-)$1	289	154	157	9.0000
d33	chr14:24114608-24114843(+)$1	235	152	155	9.0000
f!!	chr5:177022613-177022859(+)$1	246	69	72	9.0000
FFF	chr16:71962691-71962961(+)$1	270	70	73	9.0000
ggg	chr22:39130838-39131075(-)$1	237	40	43	9.0000
"""	chr17:17715415-17715678(-)$1	263	14	17	9.0000
vvv	chr2:47387244-47387512(-)$1	268	30	33	9.0000
bb#	chr17:80197124-80197335(+)$1	211	71	74	9.0000
hh[	chrX:22012650-22012934(+)$1	284	15	18	9.0000
33f	chr20:23614308-23614524(-)$1	216	90	93	9.0000
hff	chr4:74286727-74286932(+)$1	205	78	81	9.0000
B{B	chr12:7311262-7311498(+)$1	236	2	5	9.0000
]bb	chr1:19400940-19401201(-)$1	261	62	65	9.0000
"""	chrX:20167986-20168303(-)$1	317	22	25	9.0000
nnn	chr3:13358059-13358312(-)$1	253	9	12	9.0000
fff	chr1:29652695-29652997(+)$1	302	22	25	9.0000
CCC	chr2:219679548-219679857(+)$1	309	7	10	9.0000
:::	chr20:36146252-36146522(-)$1	270	0	3	9.0000
DDD	chr14:65405954-65406209(-)$1	255	23	26	9.0000
EEE	chr19:14198705-14199007(-)$1	302	13	16	9.0000
:FF	chr17:40931152-40931465(+)$1	313	0	3	9.0000
fff	chr2:97525792-97526021(-)$1	229	142	145	9.0000
III	chr12:27908543-27908889(+)$1	346	169	172	9.0000
EEE	chr20:23614368-23614598(-)$1	230	1	4	9.0000
BB{	chr13:20978058-20978352(-)$1	294	15	18	9.0000
{II	chr17:53469945-53470183(-)$1	238	3	6	9.0000
[bb	chr20:60884943-60885191(-)$1	248	51	54	9.0000
ddd	chr17:17715343-17715615(-)$1	272	49	52	9.0000
DDD	chr20:32667773-32668063(+)$1	290	28	31	9.0000
ggg	chr10:73576803-73577056(-)$1	253	39	42	9.0000

#DB
(((	chr1:12035120-12035359(+)$1	1	79	82	9.0000
(((	chr19:45452363-45452636(+)$1	1	4	7	9.0000
..(	chr10:5807704-5807976(-)$1	1	8	11	9.0000
(((	chr1:10441373-10441627(+)$1	1	124	127	9.0000
..(	chr8:21939711-21939924(+)$1	1	11	14	9.0000
(((	chr16:88781810-88782128(-)$1	1	160	163	9.0000
(.(	chr7:148700597-148700857(-)$1	1	3	6	9.0000
))(	chr4:88904053-88904294(+)$1	1	87	90	9.0000
(((	chr20:2444302-2444527(-)$1	1	25	28	9.0000
..(	chr16:2569688-2569944(+)$1	1	75	78	9.0000
))(	chr19:33791740-33791981(-)$1	1	126	129	9.0000
(((	chr16:88718311-88718572(-)$1	1	5	8	9.0000
(((	chr2:219679818-219680057(+)$1	1	12	15	9.0000
(((	chr19:10800299-10800547(+)$1	1	15	18	9.0000
...	chr7:150035604-150035883(-)$1	1	34	37	9.0000
...	chr8:145067170-145067426(+)$1	1	24	27	9.0000
((.	chr11:2965688-2965929(-)$1	1	9	12	9.0000
(.(	chr3:48445438-48445679(-)$1	1	10	13	9.0000
.((	chr10:120927301-120927585(-)$1	1	119	122	9.0000
((.	chr3:141644468-141644746(+)$1	1	15	18	9.0000
.))	chr19:35557295-35557540(+)$1	1	22	25	9.0000
((.	chr22:38202677-38202900(+)$1	1	0	3	9.0000
.((	chr3:100467434-100467719(+)$1	1	29	32	9.0000
(.(	chr19:811527-811746(+)$1	1	114	117	9.0000
(((	chr5:135399077-135399419(+)$1	1	59	62	9.0000
(((	chr17:7757846-7758112(+)$1	1	24	27	9.0000
..(	chr17:76168304-76168537(+)$1	1	9	12	9.0000
(((	chr19:54704927-54705170(+)$1	1	54	57	9.0000
(((	chr7:105731336-105731587(-)$1	1	130	133	9.0000
...	chr8:126034078-126034307(+)$1	1	27	30	9.0000
).(	chr19:39221000-39221226(+)$1	1	8	11	9.0000
(((	chr17:1680647-1680864(+)$1	1	9	12	9.0000
(((	chr1:23409772-23410021(+)$1	1	2	5	9.0000
(((	chr16:30786222-30786503(+)$1	1	7	10	9.0000
...	chr20:23614398-23614621(-)$1	1	3	6	9.0000
)))	chr19:13054974-13055215(+)$1	1	71	74	9.0000
(((	chr19:36149455-36149728(+)$1	1	37	40	9.0000
(((	chr19:49995006-49995261(+)$1	1	31	34	9.0000
(((	chr17:79845642-79845886(-)$1	1	62	65	9.0000
(((	chr12:106632230-106632478(-)$1	1	12	15	9.0000
((.	chr14:24114350-24114619(+)$1	1	11	14	9.0000
((.	chr14:69846806-69847064(-)$1	1	79	82	9.0000
(((	chr6:43148965-43149258(+)$1	1	18	21	9.0000
)))	chr7:100400257-100400506(-)$1	1	76	79	9.0000
..)	chr20:25206971-25207227(+)$1	1	116	119	9.0000
(((	chr17:79780614-79780853(-)$1	1	10	13	9.0000
(((	chr6:64290886-64291109(+)$1	1	120	123	9.0000
...	chr20:3734295-3734596(-)$1	1	104	107	9.0000
(((	chr1:55529595-55529844(+)$1	1	11	14	9.0000
(((	chr17:4927739-4928034(+)$1	1	16	19	9.0000
..(	chr20:62369585-62369859(+)$1	1	2	5	9.0000
(((	chr3:48445724-48446003(-)$1	1	3	6	9.0000
(((	chr20:24943652-24943908(-)$1	1	57	60	9.0000
(((	chr5:177022785-177023072(+)$1	1	9	12	9.0000
(.(	chr6:30593812-30594173(+)$1	1	3	6	9.0000
.))	chr16:2820982-2821287(+)$1	1	120	123	9.0000
)).	chr12:46751921-46752195(-)$1	1	229	232	9.0000
)))	chr6:163994538-163994808(+)$1	1	108	111	9.0000
(((	chr9:116822404-116822638(-)$1	1	14	17	9.0000
...	chr4:1810240-1810500(+)$1	1	158	161	9.0000
(((	chr10:54076626-54076906(+)$1	1	46	49	9.0000
.))	chr10:15254202-15254507(-)$1	1	204	207	9.0000
)).	chr1:155106878-155107161(+)$1	1	38	41	9.0000
(((	chr11:116703455-116703709(+)$1	1	45	48	9.0000
(((	chr12:56119545-56119788(-)$1	1	16	19	9.0000
)))	chr10:7791276-7791503(+)$1	1	79	82	9.0000
.((	chr17:76168236-76168486(+)$1	1	51	54	9.0000
.((	chr16:23701296-23701608(+)$1	1	6	9	9.0000
)))	chr6:64291029-64291279(+)$1	1	81	84	9.0000
(((	chr1:201104428-201104733(-)$1	1	7	10	9.0000
)).	chr1:183595931-183596220(-)$1	1	154	157	9.0000
)..	chr14:24114608-24114843(+)$1	1	152	155	9.0000
(..	chr5:177022613-177022859(+)$1	1	69	72	9.0000
(((	chr16:71962691-71962961(+)$1	1	70	73	9.0000
)))	chr22:39130838-39131075(-)$1	1	40	43	9.0000
...	chr17:17715415-17715678(-)$1	1	14	17	9.0000
...	chr2:47387244-47387512(-)$1	1	30	33	9.0000
((.	chr17:80197124-80197335(+)$1	1	71	74	9.0000
((.	chrX:22012650-22012934(+)$1	1	15	18	9.0000
..)	chr20:23614308-23614524(-)$1	1	90	93	9.0000
)))	chr4:74286727-74286932(+)$1	1	78	81	9.0000
(.(	chr12:7311262-7311498(+)$1	1	2	5	9.0000
.))	chr1:19400940-19401201(-)$1	1	62	65	9.0000
...	chrX:20167986-20168303(-)$1	1	22	25	9.0000
...	chr3:13358059-13358312(-)$1	1	9	12	9.0000
(((	chr1:29652695-29652997(+)$1	1	22	25	9.0000
(((	chr2:219679548-219679857(+)$1	1	7	10	9.0000
...	chr20:36146252-36146522(-)$1	1	0	3	9.0000
(((	chr14:65405954-65406209(-)$1	1	23	26	9.0000
(((	chr19:14198705-14199007(-)$1	1	13	16	9.0000
.((	chr17:40931152-40931465(+)$1	1	0	3	9.0000
)))	chr2:97525792-97526021(-)$1	1	142	145	9.0000
(((	chr12:27908543-27908889(+)$1	1	169	172	9.0000
(((	chr20:23614368-23614598(-)$1	1	1	4	9.0000
((.	chr13:20978058-20978352(-)$1	1	15	18	9.0000
.((	chr17:53469945-53470183(-)$1	1	3	6	9.0000
.((	chr20:60884943-60885191(-)$1	1	51	54	9.0000
(((	chr17:17715343-17715615(-)$1	1	49	52	9.0000
(((	chr20:32667773-32668063(+)$1	1	28	31	9.0000
)))	chr10:73576803-73577056(-)$1	1	39	42	9.0000

#PSSM
C : 0.98	c : 0.02	
A : 0.98	a : 0.02	
G : 0.98	g : 0.02	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_UTR_m1_run2.nuc.txt

#NT
AUucuuucuuuuucucucucucucguuuc	chr12:6728366-6728624(-)$1	258	45	74	30.3333
cuucucucucucucucucucucucucuuc	chr1:61548238-61548527(+)$1	289	104	133	38.3541
UGUUUUUCUUUCUUCCUUUCCUUUUCUCU	chr3:113440390-113440615(-)$1	225	123	152	31.7916
cuucuuuccuucauccuuuuccuucauuc	chrX:133930311-133930641(-)$1	330	116	145	23.6666
UUucucucucucucucucucucucucucu	chr15:37390305-37390689(-)$1	384	61	90	41.2708
CCUCucucuuucuucuucuucuucuucuu	chr19:45912464-45912725(-)$1	261	207	236	26.4791
ucucaucuccucuuugucuuuuucucuuu	chr17:30808996-30809213(+)$1	217	46	75	26.4791
uccucuccucucucucucuugcuuucuuc	chr16:58054536-58054828(+)$1	292	114	143	28.2499
uuuccuuuggguuuuuuuuuucuuucuuu	chr19:3468543-3468811(+)$1	268	75	104	24.0833
ucccucacuuucuuccucucuccuuccuu	chr10:72182590-72182861(+)$1	271	137	166	30.1249
UUGGUGUAUUUCUUUUUCCUCCUUUCUGU	chrX:109416701-109416960(+)$1	259	82	111	24.6041
uuuccuucuuucuuucuuuuucuuucuuu	chr19:37675118-37675365(-)$1	247	16	45	45.8541
uuucuuucuuucuuucucuuucuuucuuu	chr1:151668949-151669172(+)$1	223	56	85	50.6458
uuucuuuccuuccuuccuuuucuuuucuC	chr1:205585285-205585509(-)$1	224	77	106	28.8749
uuucuuuccuuccuuccuuuucuuuucuC	chr1:205585309-205585532(-)$1	223	100	129	28.8749
UAUCUUUCUUUCUCUCUCUCUCAAACUUU	chr3:10168185-10168421(+)$1	236	112	141	34.8124
uuucuuuuuucuuuucuccuuccuucuuc	chrX:79927770-79928019(-)$1	249	42	71	29.6041
uuccauuguuccuuuaacuuucucucuug	chr5:112227438-112227706(-)$1	268	20	49	24.1874
uuucccucuuuguuccuucuuuucccuuu	chr2:105964418-105964680(+)$1	262	48	77	26.6874
ucucucucucucucucucucucucucuuu	chrX:80065035-80065286(-)$1	251	1	30	42.8333
CCUCUUUCAUUCUUUCUCUCCGUCUUUUU	chr15:96874018-96874293(+)$1	275	111	140	32.5208
uguuucuccuucucucuccuuccuucuuc	chr1:46978654-46978942(+)$1	288	1	30	29.9166
uucuuuucuuccuuccucuuccucucuuA	chr12:77416267-77416567(-)$1	300	150	179	31.3749
Uuuucuuccuucuuucucuucccuccuuc	chr11:73685748-73686026(-)$1	278	35	64	31.3749
UUCUCCUCUGUCUUUCUCUCUCCCUCUCC	chr6:32153618-32153876(-)$1	258	16	45	28.3541
ucucuuucucucucucucuugcucucucu	chr7:34970353-34970629(-)$1	276	104	133	39.2916
ucuccgucucucuuucucucucagccucu	chr19:49838590-49838911(+)$1	321	103	132	30.8541
GUGcucucuuucucucucucucucccucu	chrX:9685005-9685285(+)$1	280	109	138	32.7291
uuuuaucuuuucuuucuuuuucuuucuuu	chr12:123779049-123779286(-)$1	237	39	68	34.9166
UCCACUUCUUCCUUUCUCUUUCUCUCUUC	chr12:7031990-7032329(+)$1	339	187	216	33.9791
uuucuuucUUUCUUUCUUuuuuuuuuuuu	chr7:99948766-99949029(+)$1	263	72	101	42.1041
CUUGUCUCCCUCUCCCUUUUUCUGUCUUU	chr20:35090780-35091072(+)$1	292	125	154	29.3958
CUUCAGucuuucuugcucucucuggcucu	chrX:62569249-62569557(-)$1	308	106	135	29.6041
ugggcuucuuucugucucuuucugucuuu	chr19:41828834-41829111(+)$1	277	25	54	34.9166
uuucuuucuuuucuuuuguuucuuuuuuu	chr2:158683056-158683268(-)$1	212	68	97	33.5624
ccccuccuuuucuuuuuccuuccuucuuu	chr14:35498372-35498662(+)$1	290	128	157	24.2916
uccaucucuguauuucccugucuuucucu	chr17:7813591-7813856(+)$1	265	94	123	26.5833
GUUAGUUAUUUUCUCCUCUUUCUUUCCUU	chr6:24719011-24719270(-)$1	259	81	110	23.2499
ccucccucucucucccucucccuUUCUUU	chr12:65089796-65090045(+)$1	249	109	138	33.6666
ugucuuucucucugucucucccuucuuuu	chr19:4390348-4390617(-)$1	269	134	163	34.6041
ucucucucucucucucucucucucucuuu	chr2:55516762-55517026(-)$1	264	88	117	42.8333
UCUUUCUCUUUCUGUCACCUUUUUUCUCU	chr1:46744327-46744539(-)$1	212	93	122	29.7083
ucugugucucuauuucucuuccugucacu	chr6:27223878-27224150(+)$1	272	45	74	27.7291
ucucuuuguuuccucuucucugugucucu	chr19:56091182-56091505(-)$1	323	100	129	27.1041
uuucuuuccuuccuuccuucuuuUUUGUU	chr19:48245380-48245658(+)$1	278	21	50	26.8958
ucucucucucucuuucucucucucucucu	chr17:37688275-37688564(+)$1	289	66	95	42.5208
cuuccuuccuuccuucccuucuuuucuuu	chr8:42878488-42878764(+)$1	276	60	89	30.1249

#otherMatches

#Struct PSSM
:::::::::::EEEEE{EEEEE:::::::	chr19:4390234-4390492(-)$1	258	9	38	34.6041
{DDDD::::::::::::::::::::::::	chr12:6728366-6728624(-)$1	258	45	74	30.3333
eeeee::::::::::::::::::::::::	chr1:61548238-61548527(+)$1	289	104	133	38.3541
EEEE::::::::::::::::::::ccc[g	chr3:113440390-113440615(-)$1	225	123	152	31.7916
:::::::::::::::::::::::::::::	chrX:133930311-133930641(-)$1	330	116	145	23.6666
:::::::::::::::::::::::::::::	chr15:37390305-37390689(-)$1	384	61	90	41.2708
e::::::::::::::::::::::::::::	chr19:45912464-45912725(-)$1	261	207	236	26.4791
>ggggggg:::::::::::::::::::::	chr17:30808996-30809213(+)$1	217	46	75	26.4791
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:58054536-58054828(+)$1	292	114	143	28.2499
rrrrrrbb22eeeee]=============	chr19:3468543-3468811(+)$1	268	75	104	24.0833
:::::::::::::::::::::::::::::	chr10:72182590-72182861(+)$1	271	137	166	30.1249
""bbpppppppbb4444a]dddd22ccc]	chrX:109416701-109416960(+)$1	259	82	111	24.6041
:::::::::::::::::::::::::::::	chr19:37675118-37675365(-)$1	247	16	45	45.8541
:::::::::::::::::::::::::::::	chr1:151668949-151669172(+)$1	223	56	85	50.6458
:::::::::::::::::::::::::::cc	chr1:205585285-205585509(-)$1	224	77	106	28.8749
//////DDDD:::::::::::::::::cc	chr1:205585309-205585532(-)$1	223	100	129	28.8749
:::::::::::::::::::::::ffffff	chr3:10168185-10168421(+)$1	236	112	141	34.8124
^^^^^^^^^^^^^^^^^ccc55555bb]c	chrX:79927770-79928019(-)$1	249	42	71	29.6041
:::::::::::::::::::::::::::::	chr5:112227438-112227706(-)$1	268	20	49	24.1874
::FFFFFFKKCCC::::::::CCCFFFFF	chr2:105964418-105964680(+)$1	262	48	77	26.6874
:::::::::::::DDDD:DDDDBB{EEEE	chrX:80065035-80065286(-)$1	251	1	30	42.8333
:::::::::::::::::::::appppppp	chr15:96874018-96874293(+)$1	275	111	140	32.5208
:::::::::::::::::::::::::::::	chr1:46978654-46978942(+)$1	288	1	30	29.9166
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:77416267-77416567(-)$1	300	150	179	31.3749
:::::::::::::::::::::::::::::	chr11:73685748-73686026(-)$1	278	35	64	31.3749
:::JJJJJJJJJJNNNNNBB:::::::::	chr6:32153618-32153876(-)$1	258	16	45	28.3541
ee:::::::::::::::::::::::::::	chr7:34970353-34970629(-)$1	276	104	133	39.2916
c]bb]============]dddd:BB::::	chr19:49838590-49838911(+)$1	321	103	132	30.8541
d]bb:JJJJJJJJJJ{EEEEE{IIIIIII	chrX:9685005-9685285(+)$1	280	109	138	32.7291
======:::::::::::::::::::::::	chr12:123779049-123779286(-)$1	237	39	68	34.9166
::::::eeeee!!ccc[aeeeee"""ccc	chr12:7031990-7032329(+)$1	339	187	216	33.9791
:::::::::::::::::::::::::::::	chr7:99948766-99949029(+)$1	263	72	101	42.1041
E::::::::::::::::::::::::::::	chr20:35090780-35091072(+)$1	292	125	154	29.3958
:::::::::::::::::::::::ddddoo	chrX:62569249-62569557(-)$1	308	106	135	29.6041
eeee+++++++++++++++++++dddd##	chr19:41828834-41829111(+)$1	277	25	54	34.9166
:::::::::::::::::::::::::::::	chr2:158683056-158683268(-)$1	212	68	97	33.5624
ffff]bb22ccc:::::::::::::::::	chr14:35498372-35498662(+)$1	290	128	157	24.2916
:::::::::::::::::::::::ffffff	chr17:7813591-7813856(+)$1	265	94	123	26.5833
e!!bbuuuuuuuuuuuubb22eeeee:::	chr6:24719011-24719270(-)$1	259	81	110	23.2499
FFFFFKKCCC{ABBNNNNNFFFFFF::dd	chr12:65089796-65090045(+)$1	249	109	138	33.6666
^^^^^^^^^^^^^^^^^^^ccc22bb333	chr19:4390348-4390617(-)$1	269	134	163	34.6041
:::::::ccc####eeeee"""ccc[ddd	chr2:55516762-55517026(-)$1	264	88	117	42.8333
:::::::::::::::::::::::::::::	chr1:46744327-46744539(-)$1	212	93	122	29.7083
rrreeeee:::::::::::::::::::::	chr6:27223878-27224150(+)$1	272	45	74	27.7291
:::::::::::::::::::::::::::::	chr19:56091182-56091505(-)$1	323	100	129	27.1041
:::::::::::::::::::::::::::::	chr19:48245380-48245658(+)$1	278	21	50	26.8958
e:::::::BB{FFFFFF::::::::::::	chr17:37688275-37688564(+)$1	289	66	95	42.5208
:::::::::::::::::::::::::::::	chr8:42878488-42878764(+)$1	276	60	89	30.1249

#DB
...........(((((.(((((.......	chr19:4390234-4390492(-)$1	1	9	38	34.6041
.((((........................	chr12:6728366-6728624(-)$1	1	45	74	30.3333
)))))........................	chr1:61548238-61548527(+)$1	1	104	133	38.3541
))))....................(((.(	chr3:113440390-113440615(-)$1	1	123	152	31.7916
.............................	chrX:133930311-133930641(-)$1	1	116	145	23.6666
.............................	chr15:37390305-37390689(-)$1	1	61	90	41.2708
)............................	chr19:45912464-45912725(-)$1	1	207	236	26.4791
.))))))).....................	chr17:30808996-30809213(+)$1	1	46	75	26.4791
.............................	chr16:58054536-58054828(+)$1	1	114	143	28.2499
......))..))))).)))))))))))))	chr19:3468543-3468811(+)$1	1	75	104	24.0833
.............................	chr10:72182590-72182861(+)$1	1	137	166	30.1249
..((.......))....).))))..))).	chrX:109416701-109416960(+)$1	1	82	111	24.6041
.............................	chr19:37675118-37675365(-)$1	1	16	45	45.8541
.............................	chr1:151668949-151669172(+)$1	1	56	85	50.6458
...........................((	chr1:205585285-205585509(-)$1	1	77	106	28.8749
......)))).................((	chr1:205585309-205585532(-)$1	1	100	129	28.8749
.......................((((((	chr3:10168185-10168421(+)$1	1	112	141	34.8124
.................))).....)).)	chrX:79927770-79928019(-)$1	1	42	71	29.6041
.............................	chr5:112227438-112227706(-)$1	1	20	49	24.1874
..((((((..(((........((((((((	chr2:105964418-105964680(+)$1	1	48	77	26.6874
.............((((.((((((.((((	chrX:80065035-80065286(-)$1	1	1	30	42.8333
.....................(.......	chr15:96874018-96874293(+)$1	1	111	140	32.5208
.............................	chr1:46978654-46978942(+)$1	1	1	30	29.9166
.(((.........................	chr12:77416267-77416567(-)$1	1	150	179	31.3749
.............................	chr11:73685748-73686026(-)$1	1	35	64	31.3749
...((((((((((.....((.........	chr6:32153618-32153876(-)$1	1	16	45	28.3541
))...........................	chr7:34970353-34970629(-)$1	1	104	133	39.2916
).)).)))))))))))).)))).((....	chr19:49838590-49838911(+)$1	1	103	132	30.8541
).)).((((((((((.(((((.(((((((	chrX:9685005-9685285(+)$1	1	109	138	32.7291
)))))).......................	chr12:123779049-123779286(-)$1	1	39	68	34.9166
......(((((..(((.((((((...(((	chr12:7031990-7032329(+)$1	1	187	216	33.9791
.............................	chr7:99948766-99949029(+)$1	1	72	101	42.1041
(............................	chr20:35090780-35091072(+)$1	1	125	154	29.3958
.......................((((..	chrX:62569249-62569557(-)$1	1	106	135	29.6041
((((...................((((..	chr19:41828834-41829111(+)$1	1	25	54	34.9166
.............................	chr2:158683056-158683268(-)$1	1	68	97	33.5624
)))).))..))).................	chr14:35498372-35498662(+)$1	1	128	157	24.2916
.......................((((((	chr17:7813591-7813856(+)$1	1	94	123	26.5833
(..((............))..)))))...	chr6:24719011-24719270(-)$1	1	81	110	23.2499
(((((..(((.(((.....((((((..((	chr12:65089796-65090045(+)$1	1	109	138	33.6666
...................)))..))...	chr19:4390348-4390617(-)$1	1	134	163	34.6041
.......(((....(((((...(((.(((	chr2:55516762-55517026(-)$1	1	88	117	42.8333
.............................	chr1:46744327-46744539(-)$1	1	93	122	29.7083
...))))).....................	chr6:27223878-27224150(+)$1	1	45	74	27.7291
.............................	chr19:56091182-56091505(-)$1	1	100	129	27.1041
.............................	chr19:48245380-48245658(+)$1	1	21	50	26.8958
).......((.((((((............	chr17:37688275-37688564(+)$1	1	66	95	42.5208
.............................	chr8:42878488-42878764(+)$1	1	60	89	30.1249

#PSSM
u : 0.58	U : 0.16	c : 0.10	C : 0.08	G : 0.04	A : 0.02	
u : 0.35	c : 0.27	U : 0.16	g : 0.08	C : 0.08	G : 0.02	A : 0.02	
u : 0.60	U : 0.16	c : 0.12	G : 0.04	C : 0.04	g : 0.02	
c : 0.60	u : 0.10	C : 0.08	U : 0.06	G : 0.04	A : 0.04	g : 0.04	a : 0.02	
u : 0.54	c : 0.18	U : 0.12	a : 0.06	C : 0.04	A : 0.02	G : 0.02	
u : 0.47	c : 0.27	U : 0.10	C : 0.06	G : 0.04	g : 0.04	
u : 0.70	U : 0.18	c : 0.08	a : 0.02	
c : 0.66	C : 0.14	u : 0.10	A : 0.04	g : 0.04	
u : 0.60	U : 0.16	c : 0.16	g : 0.02	A : 0.02	C : 0.02	
u : 0.47	c : 0.27	U : 0.16	g : 0.04	G : 0.02	C : 0.02	
u : 0.70	U : 0.18	c : 0.06	g : 0.02	C : 0.02	
c : 0.64	C : 0.18	u : 0.08	a : 0.04	g : 0.02	U : 0.02	
u : 0.64	U : 0.18	c : 0.12	a : 0.02	C : 0.02	
u : 0.52	c : 0.20	U : 0.14	g : 0.06	C : 0.04	G : 0.02	
u : 0.62	c : 0.14	U : 0.14	C : 0.06	g : 0.02	
c : 0.64	C : 0.18	u : 0.10	g : 0.02	U : 0.02	a : 0.02	
u : 0.66	U : 0.18	c : 0.10	a : 0.02	A : 0.02	
c : 0.60	u : 0.16	C : 0.14	U : 0.06	g : 0.02	
u : 0.72	U : 0.14	c : 0.08	C : 0.04	
u : 0.47	c : 0.31	U : 0.10	C : 0.08	g : 0.02	
u : 0.58	c : 0.18	U : 0.12	C : 0.06	g : 0.04	
c : 0.66	u : 0.12	C : 0.12	U : 0.04	G : 0.02	g : 0.02	
u : 0.68	U : 0.14	c : 0.10	A : 0.02	C : 0.02	a : 0.02	
u : 0.39	c : 0.27	U : 0.12	g : 0.10	C : 0.06	A : 0.02	G : 0.02	
u : 0.58	U : 0.20	c : 0.14	g : 0.04	A : 0.02	
c : 0.58	C : 0.18	u : 0.16	U : 0.04	a : 0.02	
u : 0.66	U : 0.18	c : 0.08	C : 0.02	a : 0.02	G : 0.02	
u : 0.58	c : 0.18	U : 0.14	C : 0.06	G : 0.02	
u : 0.54	U : 0.18	c : 0.14	C : 0.08	g : 0.02	A : 0.02	

#score	1536.625
#seq	48
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_transcript_m2_run2.nuc.txt

#NT
UUUGUUCU	chr20:39794014-39794291(+)$1	277	93	101	16.1428
UUUUUUGU	chr7:158705590-158705886(+)$1	296	243	251	16.5510
UUUUUUGU	chr4:144469025-144469320(+)$1	295	283	291	16.5510
GUUUUUCU	chr7:127973299-127973515(-)$1	216	80	88	15.1224
UUAUUUCU	chr1:154148588-154148818(-)$1	230	35	43	15.9387
UUUAUUCU	chr12:4657808-4658101(+)$1	293	200	208	16.3469
UUUUUUCU	chr8:30510848-30511133(-)$1	285	0	8	19.9183
UUUUUUCU	chr10:124917151-124917450(+)$1	299	79	87	19.9183
UUUUUUUU	chr9:4834041-4834301(+)$1	260	250	258	16.5510
UAUUUUCU	chr11:77336693-77336917(-)$1	224	44	52	15.6326
UUUGUUCU	chr4:56283318-56283598(+)$1	280	220	228	16.1428
UUUUUUCU	chr7:10973161-10973420(-)$1	259	85	93	19.9183
UUAUUUCU	chr18:55282772-55283006(-)$1	234	184	192	15.9387
UUUUUCCU	chr19:5657154-5657431(+)$1	277	233	241	15.6326
UUUUUUCU	chr5:39134859-39135164(-)$1	305	32	40	19.9183
uuuguucu	chr22:49986618-49986915(-)$1	297	277	285	16.1428
uuuuuugu	chr15:76226465-76226913(+)$1	448	37	45	16.5510
UUUUUUGU	chr5:126156501-126156736(+)$1	235	23	31	16.5510
UUUUUACU	chr21:34931452-34931768(+)$1	316	68	76	15.6326
UUUUUGCU	chr1:70694099-70694383(+)$1	284	275	283	15.5306
UUUUUCCU	chr9:100286439-100286691(+)$1	252	238	246	15.6326
UUCUUUCU	chrX:131188622-131188926(+)$1	304	3	11	15.9387
UUCUUUCU	chr12:54635443-54635709(-)$1	266	6	14	15.9387
UUUUUUUU	chr7:26247971-26248216(+)$1	245	13	21	16.5510
UUUAUUCU	chr6:30690606-30690820(+)$1	214	74	82	16.3469
UUUUUUUU	chr10:120070210-120070523(-)$1	313	55	63	16.5510
UUAUUUCU	chr22:20079010-20079238(+)$1	228	188	196	15.9387
UUUUUUAU	chr1:235387943-235388190(-)$1	247	180	188	16.1428
UUUUUUCU	chr3:5022975-5023243(+)$1	268	10	18	19.9183
UUGUUUCU	chr7:96318045-96318354(-)$1	309	13	21	15.7346
UUUUUUUU	chr1:59160698-59160981(-)$1	283	244	252	16.5510
UGUUUUCU	chr17:7481044-7481275(+)$1	231	85	93	15.4285
UAUUUUCU	chr2:175994765-175995035(-)$1	270	251	259	15.6326
UUUUUUGU	chrX:70518230-70518459(+)$1	229	73	81	16.5510
UUUAUUCU	chr17:29185077-29185361(+)$1	284	84	92	16.3469
UUUUUUUU	chr2:145146937-145147194(-)$1	257	203	211	16.5510
UUUUUUCC	chr20:49197710-49197958(+)$1	248	0	8	15.1224
UUUUUUCU	chr2:27564714-27565045(-)$1	331	117	125	19.9183
UAUUUUCU	chr1:113153337-113153683(-)$1	346	39	47	15.6326
UUUUAUCU	chr22:29940431-29940695(-)$1	264	9	17	15.3265
UUUUUUCU	chr2:27892088-27892352(+)$1	264	185	193	19.9183
UUUCUUCU	chr21:37736363-37736661(+)$1	298	76	84	15.9387
UUUUAUCU	chr15:40681624-40681916(+)$1	292	46	54	15.3265
UUUAUUCU	chrX:135593971-135594241(+)$1	270	162	170	16.3469
UUCUUUCU	chr1:117641368-117641629(+)$1	261	218	226	15.9387
UUUAUUCU	chr15:40943567-40943823(+)$1	256	234	242	16.3469
UUUUUUCU	chr6:47544162-47544424(+)$1	262	82	90	19.9183
UUUUUUCU	chr16:47531214-47531499(+)$1	285	82	90	19.9183

#otherMatches

#Struct PSSM
fffff!!d	chr6:158288510-158288764(+)$1	254	12	20	15.6326
:EEEEEFF	chr20:39794014-39794291(+)$1	277	93	101	16.1428
qqqqqccc	chr7:158705590-158705886(+)$1	296	243	251	16.5510
EEE}FFFF	chr4:144469025-144469320(+)$1	295	283	291	16.5510
dd####bb	chr7:127973299-127973515(-)$1	216	80	88	15.1224
EE{DDDDK	chr1:154148588-154148818(-)$1	230	35	43	15.9387
eeee####	chr12:4657808-4658101(+)$1	293	200	208	16.3469
JJJJJJJJ	chr8:30510848-30511133(-)$1	285	0	8	19.9183
:::eeeee	chr10:124917151-124917450(+)$1	299	79	87	19.9183
EEE:::::	chr9:4834041-4834301(+)$1	260	250	258	16.5510
++++++++	chr11:77336693-77336917(-)$1	224	44	52	15.6326
DDD}DDDD	chr4:56283318-56283598(+)$1	280	220	228	16.1428
ee[cccdd	chr7:10973161-10973420(-)$1	259	85	93	19.9183
qqqqqddd	chr18:55282772-55283006(-)$1	234	184	192	15.9387
hhhhhhh[	chr19:5657154-5657431(+)$1	277	233	241	15.6326
========	chr5:39134859-39135164(-)$1	305	32	40	19.9183
eBB}HHHH	chr22:49986618-49986915(-)$1	297	277	285	16.1428
mmmmdddd	chr15:76226465-76226913(+)$1	448	37	45	16.5510
MMIIIIII	chr5:126156501-126156736(+)$1	235	23	31	16.5510
::eeeee[	chr21:34931452-34931768(+)$1	316	68	76	15.6326
d333dddd	chr1:70694099-70694383(+)$1	284	275	283	15.5306
eeDDDDDD	chr9:100286439-100286691(+)$1	252	238	246	15.6326
DDDDCCC{	chrX:131188622-131188926(+)$1	304	3	11	15.9387
::::::::	chr12:54635443-54635709(-)$1	266	6	14	15.9387
JJJJJJJJ	chr7:26247971-26248216(+)$1	245	13	21	16.5510
mmbb4444	chr6:30690606-30690820(+)$1	214	74	82	16.3469
hhhhhhnn	chr10:120070210-120070523(-)$1	313	55	63	16.5510
444eeeee	chr22:20079010-20079238(+)$1	228	188	196	15.9387
nnnnnhhh	chr1:235387943-235388190(-)$1	247	180	188	16.1428
::::::::	chr3:5022975-5023243(+)$1	268	10	18	19.9183
:::::::G	chr7:96318045-96318354(-)$1	309	13	21	15.7346
>>>>>>>>	chr1:59160698-59160981(-)$1	283	244	252	16.5510
{IIIIIII	chr17:7481044-7481275(+)$1	231	85	93	15.4285
ccoooooo	chr2:175994765-175995035(-)$1	270	251	259	15.6326
gggggggn	chrX:70518230-70518459(+)$1	229	73	81	16.5510
vvvvvvvv	chr17:29185077-29185361(+)$1	284	84	92	16.3469
JJJJJJJJ	chr2:145146937-145147194(-)$1	257	203	211	16.5510
:::::DDD	chr20:49197710-49197958(+)$1	248	0	8	15.1224
ggggg!!d	chr2:27564714-27565045(-)$1	331	117	125	19.9183
mmmmffff	chr1:113153337-113153683(-)$1	346	39	47	15.6326
BMMMMCCC	chr22:29940431-29940695(-)$1	264	9	17	15.3265
iiiiiiqq	chr2:27892088-27892352(+)$1	264	185	193	19.9183
iiiiiinn	chr21:37736363-37736661(+)$1	298	76	84	15.9387
:::EEEEE	chr15:40681624-40681916(+)$1	292	46	54	15.3265
ddd]cccd	chrX:135593971-135594241(+)$1	270	162	170	16.3469
[cccnnnn	chr1:117641368-117641629(+)$1	261	218	226	15.9387
==::::::	chr15:40943567-40943823(+)$1	256	234	242	16.3469
ff888888	chr6:47544162-47544424(+)$1	262	82	90	19.9183
^^^^^^^^	chr16:47531214-47531499(+)$1	285	82	90	19.9183

#DB
(((((..(	chr6:158288510-158288764(+)$1	1	12	20	15.6326
.(((((((	chr20:39794014-39794291(+)$1	1	93	101	16.1428
.....)))	chr7:158705590-158705886(+)$1	1	243	251	16.5510
))).))))	chr4:144469025-144469320(+)$1	1	283	291	16.5510
((....((	chr7:127973299-127973515(-)$1	1	80	88	15.1224
((.((((.	chr1:154148588-154148818(-)$1	1	35	43	15.9387
((((....	chr12:4657808-4658101(+)$1	1	200	208	16.3469
((((((((	chr8:30510848-30511133(-)$1	1	0	8	19.9183
...(((((	chr10:124917151-124917450(+)$1	1	79	87	19.9183
))).....	chr9:4834041-4834301(+)$1	1	250	258	16.5510
........	chr11:77336693-77336917(-)$1	1	44	52	15.6326
))).))))	chr4:56283318-56283598(+)$1	1	220	228	16.1428
((.(((((	chr7:10973161-10973420(-)$1	1	85	93	19.9183
.....)))	chr18:55282772-55283006(-)$1	1	184	192	15.9387
(((((((.	chr19:5657154-5657431(+)$1	1	233	241	15.6326
((((((((	chr5:39134859-39135164(-)$1	1	32	40	19.9183
))).))))	chr22:49986618-49986915(-)$1	1	277	285	16.1428
....))))	chr15:76226465-76226913(+)$1	1	37	45	16.5510
..((((((	chr5:126156501-126156736(+)$1	1	23	31	16.5510
..(((((.	chr21:34931452-34931768(+)$1	1	68	76	15.6326
)...))))	chr1:70694099-70694383(+)$1	1	275	283	15.5306
))))))))	chr9:100286439-100286691(+)$1	1	238	246	15.6326
(((((((.	chrX:131188622-131188926(+)$1	1	3	11	15.9387
........	chr12:54635443-54635709(-)$1	1	6	14	15.9387
((((((((	chr7:26247971-26248216(+)$1	1	13	21	16.5510
..))....	chr6:30690606-30690820(+)$1	1	74	82	16.3469
((((((..	chr10:120070210-120070523(-)$1	1	55	63	16.5510
...)))))	chr22:20079010-20079238(+)$1	1	188	196	15.9387
.....)))	chr1:235387943-235388190(-)$1	1	180	188	16.1428
........	chr3:5022975-5023243(+)$1	1	10	18	19.9183
.......(	chr7:96318045-96318354(-)$1	1	13	21	15.7346
........	chr1:59160698-59160981(-)$1	1	244	252	16.5510
.(((((((	chr17:7481044-7481275(+)$1	1	85	93	15.4285
((......	chr2:175994765-175995035(-)$1	1	251	259	15.6326
(((((((.	chrX:70518230-70518459(+)$1	1	73	81	16.5510
........	chr17:29185077-29185361(+)$1	1	84	92	16.3469
))))))))	chr2:145146937-145147194(-)$1	1	203	211	16.5510
.....(((	chr20:49197710-49197958(+)$1	1	0	8	15.1224
(((((..(	chr2:27564714-27565045(-)$1	1	117	125	19.9183
....))))	chr1:113153337-113153683(-)$1	1	39	47	15.6326
(....(((	chr22:29940431-29940695(-)$1	1	9	17	15.3265
((((((..	chr2:27892088-27892352(+)$1	1	185	193	19.9183
((((((..	chr21:37736363-37736661(+)$1	1	76	84	15.9387
...(((((	chr15:40681624-40681916(+)$1	1	46	54	15.3265
))).))))	chrX:135593971-135594241(+)$1	1	162	170	16.3469
.(((....	chr1:117641368-117641629(+)$1	1	218	226	15.9387
))......	chr15:40943567-40943823(+)$1	1	234	242	16.3469
))......	chr6:47544162-47544424(+)$1	1	82	90	19.9183
........	chr16:47531214-47531499(+)$1	1	82	90	19.9183

#PSSM
U : 0.93	u : 0.04	G : 0.02	
U : 0.87	A : 0.06	u : 0.04	G : 0.02	
U : 0.81	A : 0.06	C : 0.06	u : 0.04	G : 0.02	
U : 0.79	A : 0.10	G : 0.04	g : 0.02	u : 0.02	C : 0.02	
U : 0.91	u : 0.04	A : 0.04	
U : 0.85	A : 0.04	C : 0.04	u : 0.04	G : 0.02	
C : 0.75	U : 0.10	G : 0.08	c : 0.02	g : 0.02	A : 0.02	
U : 0.93	u : 0.04	C : 0.02	

#score	819.6734693877561
#seq	49
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_CDS_m1_run1.nuc.txt

#NT
aggaagaaggggaagaagaagagg	chr2:61454171-61454454(-)$1	283	123	147	33.5686
AGUUUGAGGAAGAAAAUGAAGAAA	chr1:109617513-109617788(-)$1	275	99	123	27.3921
aaaaggaagaaaaagagaaagaga	chr2:99980007-99980296(+)$1	289	151	175	32.6862
ACAAGCAAGAACAAGAGGAAGAAU	chr9:114415279-114415627(+)$1	348	104	128	30.2352
aaguggaagaaguagaggaaguga	chr1:90493037-90493344(+)$1	307	23	47	31.0196
AUgaaaaaaaaacagaagaagaaa	chr15:93545325-93545639(+)$1	314	105	129	26.9019
GGGACCGAGAAGAAGAUGAAGAAG	chr14:73572477-73572736(+)$1	259	226	250	30.9215
augaugaugaagaugaugaagaug	chr8:124382004-124382280(-)$1	276	112	136	33.0784
AUgaggaugaagaagaggaggagg	chr12:39735235-39735526(-)$1	291	127	151	36.3137
ACGAUGAUGAUGAAGAUGAAGGGG	chr17:27001278-27001559(+)$1	281	91	115	29.0588
agaagaaagaagaagaagaaaaaU	chr8:68071190-68071474(+)$1	284	99	123	32.2941
GAGAGGAAAAAGAAGAGGAAAAAC	chr1:25554597-25554828(-)$1	231	177	201	31.1176
CAGAGGAAGAAGAAAAGGAAACAA	chr6:33170238-33170475(+)$1	237	125	149	27.9803
agaagaaacaggaagaagaagaaa	chr17:65899805-65900136(+)$1	331	155	179	31.2156
aagaagaagaagaagauuaaggaa	chr14:102550994-102551260(-)$1	266	84	108	34.0588
aggaggaggaggaggaUGAUGAUG	chr12:6711097-6711413(-)$1	316	253	277	30.7254
aggaggaggaagaagcagaagagg	chr8:17814977-17815254(+)$1	277	134	158	37.0000
aggaggaagaagaagaugaagaug	chr4:174253129-174253350(-)$1	221	67	91	43.8627
aggaggaggaagaagaggaggagg	chr7:72861495-72861744(-)$1	249	94	118	37.7843
aggaagaagaagaagaggaagaag	chr17:4575428-4575673(-)$1	245	74	98	42.5882
AGGAGGAAGAGGAAGAAAGUGAAA	chr2:145147050-145147368(-)$1	318	187	211	29.4509
GUGGCGAAGAAGAAGAUGAAGAUG	chr14:103806734-103807002(+)$1	268	129	153	31.7058
AAGCAAGAGAAAAAGAGGAAGAAA	chr5:37392023-37392325(+)$1	302	78	102	27.7843
acgaggaugaagaagaggaagaUG	chr17:42284721-42285064(-)$1	343	139	163	39.6470
augaaggugaagaagaugaagaug	chr9:131456112-131456339(+)$1	227	162	186	33.5686
AACAAGAAAAAGAAGCCGAAGAAA	chr20:39713098-39713308(+)$1	210	63	87	28.7647
uugaugaagaagaugaugaagaug	chr9:100773551-100773767(+)$1	216	52	76	31.9019
cagagcaagacgaagaugaagaaa	chr12:104341065-104341284(+)$1	219	81	105	33.9607
aauagaaagaaaaagacaaagaga	chrX:118975042-118975312(-)$1	270	132	156	28.6666
aggaggaagaagaagaugaagaug	chr4:174253157-174253363(-)$1	206	80	104	43.8627
aagaggaagaaagagaaaaagaaa	chr17:48822987-48823253(+)$1	266	223	247	33.0784
uagaggaagcaggagaggaagagg	chr14:39649704-39649931(+)$1	227	200	224	31.3137
GAGAGGAAAAAGAAGAGGAAAAAC	chr1:25554509-25554797(-)$1	288	146	170	31.1176
augaaggugaagaagaugaagaug	chr9:131456139-131456394(+)$1	255	135	159	33.5686
aagaggagaaagaaggagaagaUA	chr12:80189333-80189593(-)$1	260	69	93	32.5882
AACAGAAAGAAAAAGAAAAAGACC	chr1:16257493-16257728(+)$1	235	22	46	27.0000
AGGAGGAGGAGGAAGAGGAAGGCA	chr11:77378246-77378542(-)$1	296	111	135	33.7647
CAGAGGAGGAGGAAGAUGAGGACA	chr19:49377563-49377811(+)$1	248	116	140	29.6470
aggaggaagaagaggaggaagaag	chr3:167727971-167728254(-)$1	283	127	151	41.2156
aggagaaagaagaagaagaagaga	chr1:145456989-145457205(-)$1	216	144	168	41.3137
AAGAGAAGGAAGGGAAUGAAGAAG	chr1:52902448-52902739(-)$1	291	127	151	27.6862
AGGGAAUAAAAGAAGAAGAAGAGA	chr11:47767714-47768024(-)$1	310	166	190	26.6078
acgaggaagaagaagaggaagagg	chr2:180830504-180830796(-)$1	292	150	174	42.3921
aggaggaggagggagacguagaaa	chr7:156743097-156743410(+)$1	313	115	139	29.5490
UGGAGGAGGAGGACGAUGAAGAAG	chr19:49376858-49377111(+)$1	253	200	224	31.9019
aggagaaagaagaagaagaagaga	chr1:145456890-145457189(-)$1	299	128	152	41.3137
augaggaugaagacgaugaugaca	chr10:127512033-127512408(+)$1	375	193	217	31.5098
augaggacguugaagaggaagaug	chr2:29169366-29169702(+)$1	336	142	166	31.2156
agcaGCAAGAAGAAGAAGAAGGAA	chr1:29475170-29475498(-)$1	328	259	283	33.7647
aagcagaagaagaagaaaaagaag	chr16:2808432-2808649(+)$1	217	78	102	34.2549

#otherMatches

#Struct PSSM
gggg^^^^^^^^^^^^^^^^^^^^	chr11:58379033-58379317(+)$1	284	126	150	27.2941
PPPPPPEEEEE{A::::::dddde	chr2:61454171-61454454(-)$1	283	123	147	33.5686
=====yyyyyyyyyyyyyyyy===	chr1:109617513-109617788(-)$1	275	99	123	27.3921
gggg]bb:::::::::::::::::	chr2:99980007-99980296(+)$1	289	151	175	32.6862
6666dddd333ahhhhhhhh]a::	chr9:114415279-114415627(+)$1	348	104	128	30.2352
::::::::::::::::::::::::	chr1:90493037-90493344(+)$1	307	23	47	31.0196
::::::::::::::::::::::::	chr15:93545325-93545639(+)$1	314	105	129	26.9019
JJJJJJJJJYYDDDDYYA}A}BB}	chr14:73572477-73572736(+)$1	259	226	250	30.9215
::FFFFFF~~~~EEEEE}DDDD}B	chr8:124382004-124382280(-)$1	276	112	136	33.0784
2ggggggg7777777bb]a]bb33	chr12:39735235-39735526(-)$1	291	127	151	36.3137
ssssssshhhhhhhh::::EEEEE	chr17:27001278-27001559(+)$1	281	91	115	29.0588
::::::::::::::::::::::::	chr8:68071190-68071474(+)$1	284	99	123	32.2941
::::::JJJJJJJJJJJJJJ::::	chr1:25554597-25554828(-)$1	231	177	201	31.1176
d]dddd22==========::::::	chr6:33170238-33170475(+)$1	237	125	149	27.9803
\FFFFFFYYGGGGGGG}DDDD:::	chr17:65899805-65900136(+)$1	331	155	179	31.2156
^^^^^^^^^^^^^^^^^^^^^^^^	chr14:102550994-102551260(-)$1	266	84	108	34.0588
====eeeee"""ccc####a!!cc	chr12:6711097-6711413(-)$1	316	253	277	30.7254
b22dddd333bb]ccc333=====	chr8:17814977-17815254(+)$1	277	134	158	37.0000
:::::::::::DDDDPPPPPPPDD	chr4:174253129-174253350(-)$1	221	67	91	43.8627
ffff####dddd!!bb"""eeeee	chr7:72861495-72861744(-)$1	249	94	118	37.7843
::::::::::::::::::::::::	chr17:4575428-4575673(-)$1	245	74	98	42.5882
[dddd!!a$$$$$bb+++++++++	chr2:145147050-145147368(-)$1	318	187	211	29.4509
]a22a:::::::::::::::dddd	chr14:103806734-103807002(+)$1	268	129	153	31.7058
mma]ffffff333iiiiiiiii44	chr5:37392023-37392325(+)$1	302	78	102	27.7843
:bb!!a&&&&&&&ffffff"""a[	chr17:42284721-42285064(-)$1	343	139	163	39.6470
YCCC::::::::::::::::::::	chr9:131456112-131456339(+)$1	227	162	186	33.5686
^^^^^^^^^^^^^^^^^^^^^^^^	chr20:39713098-39713308(+)$1	210	63	87	28.7647
DD::::::::::::::::::::::	chr9:100773551-100773767(+)$1	216	52	76	31.9019
ffffffeeeee$$$$$bb####cc	chr12:104341065-104341284(+)$1	219	81	105	33.9607
hhhhhhh999999999eeeee666	chrX:118975042-118975312(-)$1	270	132	156	28.6666
::::::::::::::::::::::::	chr4:174253157-174253363(-)$1	206	80	104	43.8627
::::::::::::::::::::::::	chr17:48822987-48823253(+)$1	266	223	247	33.0784
::::::::::::::::::::::::	chr14:39649704-39649931(+)$1	227	200	224	31.3137
::GGGGGGG::::::::eeeee[c	chr1:25554509-25554797(-)$1	288	146	170	31.1176
HH::::::::::::::::::::::	chr9:131456139-131456394(+)$1	255	135	159	33.5686
^^^^^^^^^^^^eeeee333ccc]	chr12:80189333-80189593(-)$1	260	69	93	32.5882
::::::::::::::::::::::::	chr1:16257493-16257728(+)$1	235	22	46	27.0000
EEE{A{DDDDNNNNNCCCKKCCC:	chr11:77378246-77378542(-)$1	296	111	135	33.7647
h22bb]eeeee:::::::::::::	chr19:49377563-49377811(+)$1	248	116	140	29.6470
:DDDDYYBB::ccc[bbffffff!	chr3:167727971-167728254(-)$1	283	127	151	41.2156
FDDDDYYEEEEE~~~~BBZZZBB?	chr1:145456989-145457205(-)$1	216	144	168	41.3137
eeeee%%%%%%ffffffvvvvvvv	chr1:52902448-52902739(-)$1	291	127	151	27.6862
lbb]dddd::::::::::::::::	chr11:47767714-47768024(-)$1	310	166	190	26.6078
:::::DDDD~~~~DDDDYYBB}JJ	chr2:180830504-180830796(-)$1	292	150	174	42.3921
]cccBB}DDDD:::::::::::::	chr7:156743097-156743410(+)$1	313	115	139	29.5490
qqqqqqqbb]ggggggg:::::dd	chr19:49376858-49377111(+)$1	253	200	224	31.9019
HHHHHHKKBBLLLBBA{FFFFFFL	chr1:145456890-145457189(-)$1	299	128	152	41.3137
::::DDDDZZZDDDD}A}CCCZZZ	chr10:127512033-127512408(+)$1	375	193	217	31.5098
888ccc]dddd55555ccc22iii	chr2:29169366-29169702(+)$1	336	142	166	31.2156
mmmmbb::::::::::::::::::	chr1:29475170-29475498(-)$1	328	259	283	33.7647
ucccdddd55555ccc::::::::	chr16:2808432-2808649(+)$1	217	78	102	34.2549

#DB
((((....................	chr11:58379033-58379317(+)$1	1	126	150	27.2941
......(((((.(......(((((	chr2:61454171-61454454(-)$1	1	123	147	33.5686
(((((................)))	chr1:109617513-109617788(-)$1	1	99	123	27.3921
)))).)).................	chr2:99980007-99980296(+)$1	1	151	175	32.6862
....))))...))))))))).)..	chr9:114415279-114415627(+)$1	1	104	128	30.2352
........................	chr1:90493037-90493344(+)$1	1	23	47	31.0196
........................	chr15:93545325-93545639(+)$1	1	105	129	26.9019
)))))))))..))))..).).)).	chr14:73572477-73572736(+)$1	1	226	250	30.9215
..))))))....))))).)))).)	chr8:124382004-124382280(-)$1	1	112	136	33.0784
.))))))).......)).).))..	chr12:39735235-39735526(-)$1	1	127	151	36.3137
.......))))))))....(((((	chr17:27001278-27001559(+)$1	1	91	115	29.0588
........................	chr8:68071190-68071474(+)$1	1	99	123	32.2941
......))))))))))))))....	chr1:25554597-25554828(-)$1	1	177	201	31.1176
).))))..))))))))))......	chr6:33170238-33170475(+)$1	1	125	149	27.9803
.))))))..))))))).))))...	chr17:65899805-65900136(+)$1	1	155	179	31.2156
........................	chr14:102550994-102551260(-)$1	1	84	108	34.0588
(((((((((...(((....(..((	chr12:6711097-6711413(-)$1	1	253	277	30.7254
)..))))...)).)))...)))))	chr8:17814977-17815254(+)$1	1	134	158	37.0000
...........((((.......((	chr4:174253129-174253350(-)$1	1	67	91	43.8627
((((....((((..((...(((((	chr7:72861495-72861744(-)$1	1	94	118	37.7843
........................	chr17:4575428-4575673(-)$1	1	74	98	42.5882
.((((..(.....((.........	chr2:145147050-145147368(-)$1	1	187	211	29.4509
.)..)...............((((	chr14:103806734-103807002(+)$1	1	129	153	31.7058
..).))))))...)))))))))..	chr5:37392023-37392325(+)$1	1	78	102	27.7843
.((..(.......((((((...(.	chr17:42284721-42285064(-)$1	1	139	163	39.6470
.)))....................	chr9:131456112-131456339(+)$1	1	162	186	33.5686
........................	chr20:39713098-39713308(+)$1	1	63	87	28.7647
((......................	chr9:100773551-100773767(+)$1	1	52	76	31.9019
(((((((((((.....((....((	chr12:104341065-104341284(+)$1	1	81	105	33.9607
))))))).........)))))...	chrX:118975042-118975312(-)$1	1	132	156	28.6666
........................	chr4:174253157-174253363(-)$1	1	80	104	43.8627
........................	chr17:48822987-48823253(+)$1	1	223	247	33.0784
........................	chr14:39649704-39649931(+)$1	1	200	224	31.3137
..(((((((........(((((.(	chr1:25554509-25554797(-)$1	1	146	170	31.1176
))......................	chr9:131456139-131456394(+)$1	1	135	159	33.5686
............)))))...))).	chr12:80189333-80189593(-)$1	1	69	93	32.5882
........................	chr1:16257493-16257728(+)$1	1	22	46	27.0000
(((.(.((((.....(((..(((.	chr11:77378246-77378542(-)$1	1	111	135	33.7647
)..)).))))).............	chr19:49377563-49377811(+)$1	1	116	140	29.6470
.))))..))..(((.((((((((.	chr3:167727971-167728254(-)$1	1	127	151	41.2156
)))))..)))))....))...)).	chr1:145456989-145457205(-)$1	1	144	168	41.3137
(((((......((((((.......	chr1:52902448-52902739(-)$1	1	127	151	27.6862
.)).))))................	chr11:47767714-47768024(-)$1	1	166	190	26.6078
.....))))....))))..)).))	chr2:180830504-180830796(-)$1	1	150	174	42.3921
.))))).)))).............	chr7:156743097-156743410(+)$1	1	115	139	29.5490
.......)).))))))).....((	chr19:49376858-49377111(+)$1	1	200	224	31.9019
((((((..((...(((.((((((.	chr1:145456890-145457189(-)$1	1	128	152	41.3137
....))))...)))).).)))...	chr10:127512033-127512408(+)$1	1	193	217	31.5098
...))).)))).....)))..)))	chr2:29169366-29169702(+)$1	1	142	166	31.2156
....))..................	chr1:29475170-29475498(-)$1	1	259	283	33.7647
.))))))).....)))........	chr16:2808432-2808649(+)$1	1	78	102	34.2549

#PSSM
a : 0.56	A : 0.23	G : 0.07	C : 0.03	u : 0.03	c : 0.01	U : 0.01	
g : 0.29	a : 0.17	A : 0.15	G : 0.11	u : 0.11	U : 0.05	C : 0.03	c : 0.03	
g : 0.56	G : 0.25	a : 0.05	C : 0.03	U : 0.01	A : 0.01	u : 0.01	c : 0.01	
a : 0.60	A : 0.25	u : 0.03	G : 0.03	U : 0.01	C : 0.01	c : 0.01	
g : 0.47	G : 0.21	a : 0.13	A : 0.05	U : 0.03	C : 0.03	u : 0.03	
g : 0.49	G : 0.21	a : 0.13	A : 0.07	C : 0.05	c : 0.01	
a : 0.60	A : 0.29	G : 0.03	g : 0.03	U : 0.01	
a : 0.41	A : 0.23	u : 0.11	G : 0.09	g : 0.09	U : 0.01	c : 0.01	
g : 0.58	G : 0.27	A : 0.07	a : 0.03	c : 0.01	
a : 0.58	A : 0.35	g : 0.01	c : 0.01	u : 0.01	
a : 0.52	A : 0.25	g : 0.07	G : 0.07	U : 0.01	c : 0.01	u : 0.01	
g : 0.56	G : 0.29	a : 0.07	A : 0.03	C : 0.01	
a : 0.54	A : 0.33	g : 0.05	u : 0.01	c : 0.01	G : 0.01	
a : 0.52	A : 0.31	g : 0.05	u : 0.03	G : 0.01	C : 0.01	c : 0.01	
g : 0.64	G : 0.29	A : 0.05	
a : 0.60	A : 0.33	c : 0.01	C : 0.01	g : 0.01	
g : 0.21	a : 0.19	u : 0.17	U : 0.15	G : 0.11	A : 0.07	c : 0.03	C : 0.01	
g : 0.50	G : 0.33	a : 0.09	A : 0.03	u : 0.01	
a : 0.60	A : 0.35	G : 0.01	u : 0.01	
a : 0.54	A : 0.31	u : 0.03	g : 0.03	U : 0.03	G : 0.01	
g : 0.60	G : 0.31	A : 0.05	a : 0.01	
a : 0.58	A : 0.29	G : 0.05	u : 0.01	C : 0.01	g : 0.01	
A : 0.23	a : 0.21	g : 0.21	u : 0.13	U : 0.07	C : 0.05	G : 0.03	c : 0.01	
g : 0.31	a : 0.25	A : 0.19	G : 0.13	C : 0.05	U : 0.03	

#score	1681.2156862745103
#seq	51
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_CDS_m2_run1.nuc.txt

#NT
UUUUCUU	chr21:40610341-40610636(-)$1	295	28	35	17.2857
CUUUCUU	chr6:131924191-131924456(-)$1	265	44	51	12.8571
UCUUCUU	chr16:47699739-47699988(+)$1	249	97	104	12.6428
UUCUCUU	chr14:31380228-31380487(-)$1	259	6	13	13.2857
UUUUCUG	chr3:160122000-160122231(+)$1	231	86	93	12.9999
CUUUCUU	chr17:38288182-38288448(+)$1	266	76	83	12.8571
UUUUCCU	chr5:176696481-176696744(+)$1	263	63	70	12.7857
UUUUGUU	chr12:62777744-62778007(+)$1	263	246	253	13.7857
UUUUAUU	chr22:29669631-29669863(+)$1	232	35	42	13.7857
UUAUCUU	chr3:141272588-141272848(+)$1	260	57	64	13.2857
UUUUAUU	chr11:62570907-62571120(-)$1	213	53	60	13.7857
UUUUGUU	chr12:93789156-93789366(+)$1	210	60	67	13.7857
UUUUCUU	chr14:65568144-65568403(-)$1	259	35	42	17.2857
UUGUCUU	chr1:201965155-201965431(+)$1	276	109	116	13.4285
UUUUCUG	chr12:6618763-6619041(+)$1	278	44	51	12.9999
UUUUCUU	chr2:15523298-15523557(-)$1	259	74	81	17.2857
UUUUCUC	chr7:50663070-50663342(-)$1	272	118	125	12.9999
AUUUCUU	chr15:69714545-69714833(+)$1	288	51	58	12.7857
UUUUGUU	chr1:27099964-27100222(+)$1	258	96	103	13.7857
UUUACUU	chr2:187516589-187516841(+)$1	252	87	94	12.7857
UGUUCUU	chr1:44443539-44443805(+)$1	266	97	104	12.7142
UUUCCUU	chr7:75959417-75959665(-)$1	248	1	8	12.9285
UUUUAUU	chr18:33605492-33605788(-)$1	296	48	55	13.7857
UUUUCUU	chr7:11101343-11101563(+)$1	220	170	177	17.2857
UUUUCCU	chr5:38950671-38950932(-)$1	261	1	8	12.7857
AUUUCUU	chr17:77770209-77770454(-)$1	245	51	58	12.7857
UUUUAUU	chr13:95862870-95863144(-)$1	274	98	105	13.7857
UUUUCUU	chr20:3944518-3944789(-)$1	271	102	109	17.2857
UUGUCUU	chr14:60585117-60585433(+)$1	316	59	66	13.4285
UUAUCUU	chr15:50891287-50891548(-)$1	261	253	260	13.2857
UGUUCUU	chr10:22022583-22022844(+)$1	261	30	37	12.7142
UUUUCUU	chrX:154009477-154009731(-)$1	254	95	102	17.2857
UUUUCUU	chr1:155887333-155887576(-)$1	243	84	91	17.2857
UUUUCUU	chr1:145439664-145439916(+)$1	252	99	106	17.2857
UUUUAUU	chr5:145863007-145863259(+)$1	252	82	89	13.7857
UUGUCUU	chr7:100481590-100481813(+)$1	223	70	77	13.4285
CUUUCUU	chr11:119103056-119103294(+)$1	238	27	34	12.8571
UUUUCUU	chr9:19336164-19336423(+)$1	259	146	153	17.2857
UUUUCUU	chrX:135954343-135954616(-)$1	273	20	27	17.2857
UUUUCUG	chr1:36474389-36474615(+)$1	226	55	62	12.9999
UUUUCUU	chr22:45726436-45726678(+)$1	242	23	30	17.2857
uucucuu	chr1:158590120-158590369(-)$1	249	52	59	13.2857
UUUGCUU	chr2:113410403-113410649(+)$1	246	50	57	12.8571
UUUCCUU	chr6:138195855-138196126(+)$1	271	94	101	12.9285
UUUUCUC	chr12:133249269-133249540(-)$1	271	10	17	12.9999
UUUUGUU	chr1:65830206-65830477(+)$1	271	78	85	13.7857
UUCUCUU	chr1:219383762-219384028(+)$1	266	3	10	13.2857
UUUUCAU	chr17:8138441-8138715(-)$1	274	86	93	12.6428
UUAUCUU	chr5:180659537-180659811(+)$1	274	68	75	13.2857
UUUUGUU	chr11:47843203-47843496(-)$1	293	18	25	13.7857
UUUUGUU	chr11:57583271-57583525(+)$1	254	15	22	13.7857
uuuucuu	chr6:163991610-163991868(+)$1	258	66	73	17.2857
UUUUCUU	chr6:147660150-147660450(+)$1	300	94	101	17.2857
UUUUUUU	chr5:10381809-10382068(+)$1	259	85	92	13.5714
UUUCCUU	chr16:28836973-28837217(+)$1	244	9	16	12.9285
UUGUCUU	chr6:33162671-33162954(-)$1	283	85	92	13.4285
UUUUCCU	chr17:49071144-49071410(-)$1	266	92	99	12.7857
UUUGCUU	chr4:110448368-110448629(+)$1	261	52	59	12.8571
UUGUCUU	chr13:37578521-37578803(+)$1	282	72	79	13.4285
UUUUUUU	chr6:33273051-33273316(-)$1	265	88	95	13.5714
UUUUCUU	chr13:33095435-33095725(-)$1	290	24	31	17.2857
UUUUCUU	chr6:133111277-133111537(-)$1	260	87	94	17.2857
UUUUCUU	chr12:51399043-51399336(-)$1	293	11	18	17.2857
UAUUCUU	chr1:47735380-47735651(-)$1	271	33	40	12.6428
UUUUCUC	chr7:56144368-56144641(+)$1	273	45	52	12.9999
UUUUCUU	chr1:42647480-42647832(-)$1	352	4	11	17.2857
UUUUCUU	chr2:74755960-74756190(-)$1	230	94	101	17.2857
UUUUAUU	chr3:42672553-42672813(+)$1	260	1	8	13.7857
UUUUUUU	chr14:104153304-104153585(+)$1	281	103	110	13.5714

#otherMatches

#Struct PSSM
oofffff	chr3:37292807-37293046(+)$1	239	184	191	12.8571
::ggggg	chr21:40610341-40610636(-)$1	295	28	35	17.2857
:::::::	chr6:131924191-131924456(-)$1	265	44	51	12.8571
#aooooo	chr16:47699739-47699988(+)$1	249	97	104	12.6428
d!!ccc[	chr14:31380228-31380487(-)$1	259	6	13	13.2857
FFdddd[	chr3:160122000-160122231(+)$1	231	86	93	12.9999
A{DDDDL	chr17:38288182-38288448(+)$1	266	76	83	12.8571
:::::::	chr5:176696481-176696744(+)$1	263	63	70	12.7857
uuuffff	chr12:62777744-62778007(+)$1	263	246	253	13.7857
^^^^^^^	chr22:29669631-29669863(+)$1	232	35	42	13.7857
ggggggg	chr3:141272588-141272848(+)$1	260	57	64	13.2857
LLGGGGG	chr11:62570907-62571120(-)$1	213	53	60	13.7857
lllcccf	chr12:93789156-93789366(+)$1	210	60	67	13.7857
:::::::	chr14:65568144-65568403(-)$1	259	35	42	17.2857
bpppppp	chr1:201965155-201965431(+)$1	276	109	116	13.4285
ddd22cc	chr12:6618763-6619041(+)$1	278	44	51	12.9999
shhhhhh	chr2:15523298-15523557(-)$1	259	74	81	17.2857
g::::::	chr7:50663070-50663342(-)$1	272	118	125	12.9999
''''ddd	chr15:69714545-69714833(+)$1	288	51	58	12.7857
HHHHHHH	chr1:27099964-27100222(+)$1	258	96	103	13.7857
eee22ee	chr2:187516589-187516841(+)$1	252	87	94	12.7857
xxxxxxx	chr1:44443539-44443805(+)$1	266	97	104	12.7142
::::JJJ	chr7:75959417-75959665(-)$1	248	1	8	12.9285
55555dd	chr18:33605492-33605788(-)$1	296	48	55	13.7857
888888g	chr7:11101343-11101563(+)$1	220	170	177	17.2857
:::::::	chr5:38950671-38950932(-)$1	261	1	8	12.7857
iii333b	chr17:77770209-77770454(-)$1	245	51	58	12.7857
>>ccc22	chr13:95862870-95863144(-)$1	274	98	105	13.7857
:::::::	chr20:3944518-3944789(-)$1	271	102	109	17.2857
dddd]gg	chr14:60585117-60585433(+)$1	316	59	66	13.4285
fffff::	chr15:50891287-50891548(-)$1	261	253	260	13.2857
EEE::::	chr10:22022583-22022844(+)$1	261	30	37	12.7142
333bbdd	chrX:154009477-154009731(-)$1	254	95	102	17.2857
hhhhhh[	chr1:155887333-155887576(-)$1	243	84	91	17.2857
^^^^^^^	chr1:145439664-145439916(+)$1	252	99	106	17.2857
ccppppp	chr5:145863007-145863259(+)$1	252	82	89	13.7857
+dddd""	chr7:100481590-100481813(+)$1	223	70	77	13.4285
:::::::	chr11:119103056-119103294(+)$1	238	27	34	12.8571
hhhhhqq	chr9:19336164-19336423(+)$1	259	146	153	17.2857
=[bbfff	chrX:135954343-135954616(-)$1	273	20	27	17.2857
ennnnne	chr1:36474389-36474615(+)$1	226	55	62	12.9999
WWWWWWW	chr22:45726436-45726678(+)$1	242	23	30	17.2857
fffffpp	chr1:158590120-158590369(-)$1	249	52	59	13.2857
ttttttt	chr2:113410403-113410649(+)$1	246	50	57	12.8571
EE:::::	chr6:138195855-138196126(+)$1	271	94	101	12.9285
GGGGLLL	chr12:133249269-133249540(-)$1	271	10	17	12.9999
ffff]ff	chr1:65830206-65830477(+)$1	271	78	85	13.7857
=======	chr1:219383762-219384028(+)$1	266	3	10	13.2857
xxxxxxx	chr17:8138441-8138715(-)$1	274	86	93	12.6428
mmmmddd	chr5:180659537-180659811(+)$1	274	68	75	13.2857
JJJJJJJ	chr11:47843203-47843496(-)$1	293	18	25	13.7857
:eeeeeq	chr11:57583271-57583525(+)$1	254	15	22	13.7857
^^^^^^^	chr6:163991610-163991868(+)$1	258	66	73	17.2857
eeeee55	chr6:147660150-147660450(+)$1	300	94	101	17.2857
ttttttt	chr5:10381809-10382068(+)$1	259	85	92	13.5714
ffeeeee	chr16:28836973-28837217(+)$1	244	9	16	12.9285
IIIIIII	chr6:33162671-33162954(-)$1	283	85	92	13.4285
~EEEEE:	chr17:49071144-49071410(-)$1	266	92	99	12.7857
HHH{DDD	chr4:110448368-110448629(+)$1	261	52	59	12.8571
ggggmmm	chr13:37578521-37578803(+)$1	282	72	79	13.4285
:::::::	chr6:33273051-33273316(-)$1	265	88	95	13.5714
KEEEEE:	chr13:33095435-33095725(-)$1	290	24	31	17.2857
:::::::	chr6:133111277-133111537(-)$1	260	87	94	17.2857
::::::h	chr12:51399043-51399336(-)$1	293	11	18	17.2857
e::dddd	chr1:47735380-47735651(-)$1	271	33	40	12.6428
^^^^^^^	chr7:56144368-56144641(+)$1	273	45	52	12.9999
:::::::	chr1:42647480-42647832(-)$1	352	4	11	17.2857
NNNJJJJ	chr2:74755960-74756190(-)$1	230	94	101	17.2857
::EEEEE	chr3:42672553-42672813(+)$1	260	1	8	13.7857
d666666	chr14:104153304-104153585(+)$1	281	103	110	13.5714

#DB
..)))))	chr3:37292807-37293046(+)$1	1	184	191	12.8571
..(((((	chr21:40610341-40610636(-)$1	1	28	35	17.2857
.......	chr6:131924191-131924456(-)$1	1	44	51	12.8571
.(.....	chr16:47699739-47699988(+)$1	1	97	104	12.6428
(..(((.	chr14:31380228-31380487(-)$1	1	6	13	13.2857
((((((.	chr3:160122000-160122231(+)$1	1	86	93	12.9999
(.((((.	chr17:38288182-38288448(+)$1	1	76	83	12.8571
.......	chr5:176696481-176696744(+)$1	1	63	70	12.7857
...))))	chr12:62777744-62778007(+)$1	1	246	253	13.7857
.......	chr22:29669631-29669863(+)$1	1	35	42	13.7857
)))))))	chr3:141272588-141272848(+)$1	1	57	64	13.2857
..(((((	chr11:62570907-62571120(-)$1	1	53	60	13.7857
...))))	chr12:93789156-93789366(+)$1	1	60	67	13.7857
.......	chr14:65568144-65568403(-)$1	1	35	42	17.2857
(......	chr1:201965155-201965431(+)$1	1	109	116	13.4285
)))..))	chr12:6618763-6619041(+)$1	1	44	51	12.9999
.))))))	chr2:15523298-15523557(-)$1	1	74	81	17.2857
)......	chr7:50663070-50663342(-)$1	1	118	125	12.9999
....(((	chr15:69714545-69714833(+)$1	1	51	58	12.7857
)))))))	chr1:27099964-27100222(+)$1	1	96	103	13.7857
)))..))	chr2:187516589-187516841(+)$1	1	87	94	12.7857
.......	chr1:44443539-44443805(+)$1	1	97	104	12.7142
....(((	chr7:75959417-75959665(-)$1	1	1	8	12.9285
.....))	chr18:33605492-33605788(-)$1	1	48	55	13.7857
......)	chr7:11101343-11101563(+)$1	1	170	177	17.2857
.......	chr5:38950671-38950932(-)$1	1	1	8	12.7857
)))...)	chr17:77770209-77770454(-)$1	1	51	58	12.7857
..)))..	chr13:95862870-95863144(-)$1	1	98	105	13.7857
.......	chr20:3944518-3944789(-)$1	1	102	109	17.2857
)))).))	chr14:60585117-60585433(+)$1	1	59	66	13.4285
)))))..	chr15:50891287-50891548(-)$1	1	253	260	13.2857
(((....	chr10:22022583-22022844(+)$1	1	30	37	12.7142
...))))	chrX:154009477-154009731(-)$1	1	95	102	17.2857
((((((.	chr1:155887333-155887576(-)$1	1	84	91	17.2857
.......	chr1:145439664-145439916(+)$1	1	99	106	17.2857
((.....	chr5:145863007-145863259(+)$1	1	82	89	13.7857
.((((..	chr7:100481590-100481813(+)$1	1	70	77	13.4285
.......	chr11:119103056-119103294(+)$1	1	27	34	12.8571
(((((..	chr9:19336164-19336423(+)$1	1	146	153	17.2857
(.(((((	chrX:135954343-135954616(-)$1	1	20	27	17.2857
(.....)	chr1:36474389-36474615(+)$1	1	55	62	12.9999
.......	chr22:45726436-45726678(+)$1	1	23	30	17.2857
(((((..	chr1:158590120-158590369(-)$1	1	52	59	13.2857
.......	chr2:113410403-113410649(+)$1	1	50	57	12.8571
((.....	chr6:138195855-138196126(+)$1	1	94	101	12.9285
((((...	chr12:133249269-133249540(-)$1	1	10	17	12.9999
)))).))	chr1:65830206-65830477(+)$1	1	78	85	13.7857
(((((((	chr1:219383762-219384028(+)$1	1	3	10	13.2857
.......	chr17:8138441-8138715(-)$1	1	86	93	12.6428
....)))	chr5:180659537-180659811(+)$1	1	68	75	13.2857
(((((((	chr11:47843203-47843496(-)$1	1	18	25	13.7857
.(((((.	chr11:57583271-57583525(+)$1	1	15	22	13.7857
.......	chr6:163991610-163991868(+)$1	1	66	73	17.2857
)))))..	chr6:147660150-147660450(+)$1	1	94	101	17.2857
.......	chr5:10381809-10382068(+)$1	1	85	92	13.5714
(((((((	chr16:28836973-28837217(+)$1	1	9	16	12.9285
)))))))	chr6:33162671-33162954(-)$1	1	85	92	13.4285
.))))).	chr17:49071144-49071410(-)$1	1	92	99	12.7857
(((.(((	chr4:110448368-110448629(+)$1	1	52	59	12.8571
((((...	chr13:37578521-37578803(+)$1	1	72	79	13.4285
.......	chr6:33273051-33273316(-)$1	1	88	95	13.5714
.(((((.	chr13:33095435-33095725(-)$1	1	24	31	17.2857
.......	chr6:133111277-133111537(-)$1	1	87	94	17.2857
......(	chr12:51399043-51399336(-)$1	1	11	18	17.2857
)..((((	chr1:47735380-47735651(-)$1	1	33	40	12.6428
.......	chr7:56144368-56144641(+)$1	1	45	52	12.9999
.......	chr1:42647480-42647832(-)$1	1	4	11	17.2857
...((((	chr2:74755960-74756190(-)$1	1	94	101	17.2857
..(((((	chr3:42672553-42672813(+)$1	1	1	8	13.7857
)......	chr14:104153304-104153585(+)$1	1	103	110	13.5714

#PSSM
U : 0.89	C : 0.04	A : 0.02	u : 0.02	
U : 0.91	G : 0.02	u : 0.02	C : 0.01	A : 0.01	
U : 0.82	G : 0.07	A : 0.04	C : 0.02	c : 0.01	u : 0.01	
U : 0.88	C : 0.04	u : 0.02	G : 0.02	A : 0.01	
C : 0.75	G : 0.08	A : 0.08	U : 0.04	c : 0.02	
U : 0.91	C : 0.04	u : 0.02	A : 0.01	
U : 0.87	G : 0.04	C : 0.04	u : 0.02	A : 0.01	

#score	998.1428571428555
#seq	70
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_transcript_m1_run2.nuc.txt

#NT
cuccucucccucucucucccuuccucccuccg	chr2:32221101-32221388(-)$1	287	135	167	39.6170
ucccucccucccucccuccgucccucccuccc	chr3:71484234-71484496(-)$1	262	12	44	58.7659
cccuucccccucccccuccaccacucucucuc	chr16:16464464-16464745(+)$1	281	247	279	36.0000
cuucccucuccgacccucuuccucucccuccc	chr1:20812519-20812734(-)$1	215	99	131	34.5106
ccuucccuuuccucccucccucccucucuccc	chr5:59523208-59523458(-)$1	250	7	39	43.4468
cccccuccccucuccacccuucccuucccccc	chr2:85766449-85766860(+)$1	411	238	270	37.7021
cuccucccucucucccuccuucccucucuccc	chr7:97808808-97809112(+)$1	304	75	107	53.0212
uuccuuccucccucccucccucccucccuccc	chr9:133475405-133475679(+)$1	274	75	107	54.8297
uuccuuccucccucccucccucccucccuccc	chr1:8664483-8664755(-)$1	272	65	97	54.8297
ucccucccucccucccucccucucucccuucc	chr8:62473328-62473657(-)$1	329	1	33	53.9787
ccccuccccuccucuccccuccccucccuuuc	chr17:80595941-80596184(-)$1	243	66	98	45.5744
ccccuccccacccuucuccuccccucccuacc	chr12:133530917-133531174(-)$1	257	120	152	43.6595
ccccuccccuccucuccccuccccucccuucu	chr6:119194179-119194461(-)$1	282	92	124	46.5319
uuccucccuuccucccuucaucccucccuccc	chr12:50938981-50939228(+)$1	247	110	142	51.4255
ucccucccucccucccugucccucccucuccc	chr11:70861310-70861564(-)$1	254	157	189	40.5744
ucccucccucccucccucccucccucccuccc	chr3:32914475-32914715(+)$1	240	82	114	60.2553
CCCCUCCUCUCCUCCCACCGGCCUGCCCUUCC	chr6:114292009-114292261(-)$1	252	34	66	34.9361
ucccuucccuucccuucccuucccucccuccc	chr9:14778460-14778709(-)$1	249	5	37	41.0000
UCUcuuccuuccccccugcuccccuucccccc	chr5:154137167-154137436(+)$1	269	167	199	39.0851
ACCCCCCCCCGCGCUCCCCCUCCAGCCCUCCC	chr11:2160118-2160342(-)$1	224	39	71	34.4042
cucuccccuucucuccuccuucccuUUCUCCC	chr20:42176537-42176875(+)$1	338	59	91	35.8936
AGCCAGccucccucccucccucccucccuucc	chr3:171910879-171911133(+)$1	254	13	45	45.4680
ucccucuccucccuucuccuccccuccauccu	chr7:29345357-29345644(+)$1	287	23	55	37.3829
ACUAUGccuuccccuccccuucccucccuucc	chr16:78493895-78494176(+)$1	281	111	143	38.4468
CUccucccucccucccucccucccucucuccu	chr2:131893642-131893935(+)$1	293	88	120	52.1702
uucuucucuccaucccucuaucccucccuccc	chr6:143129705-143129989(-)$1	284	198	230	41.8510
Acccuccccuccccccuccccuccccucuccu	chr12:132579211-132579440(+)$1	229	132	164	37.4893
ucccucccucccucccuccuucccucccuccc	chr3:136392806-136393050(-)$1	244	16	48	60.8936
cccuucccuuccuuccuccuuccuucccuucu	chr12:117175317-117175616(-)$1	299	165	197	42.9148
ccgcucucucuuuccuucacucccuuccuccc	chr16:81507786-81508027(+)$1	241	203	235	34.6170
ccccuccccuccccuccccuccccuccccucc	chr12:81607338-81607607(+)$1	269	24	56	44.2978
UGACCCCGUUCCCUCCCCCUUCCCUCACUCCC	chr2:61764857-61765118(-)$1	261	112	144	34.7234
ucccucccucccucccuccucuccucccuccc	chr22:24543260-24543500(+)$1	240	16	48	55.2553
ccuccccuucccuuccuccgucucucccaccc	chr2:101455346-101455615(+)$1	269	118	150	38.9787
ucucucucucucucccuccuucucccucuccc	chr2:105908903-105909213(-)$1	310	79	111	41.4255
ccccucccuuccuccccccuccccuucccccu	chr6:64398106-64398358(+)$1	252	43	75	46.6382
ccccgccccccaccccacccucccuucccacc	chr17:45727412-45727662(+)$1	250	76	108	35.6808
UCCCCGUcuccuucccuccuucccuccuuccc	chr7:5409039-5409365(-)$1	326	132	164	43.3404
ccccucccccucccuccuccguccucccuccc	chr17:80642944-80643222(-)$1	278	91	123	38.8723
Ccccucccucccucccccccuccuucccuccc	chr1:10126048-10126322(+)$1	274	31	63	55.1489
ucuuucucucccuugccccuucccuccuucuc	chr6:52851685-52852003(-)$1	318	137	169	34.0851
ucccuuccucccucccucucuccuuuucuccc	chr6:38011251-38011550(+)$1	299	25	57	43.1276
uuccuuccuuccuaccuucuccccucccaccc	chr13:94293040-94293304(+)$1	264	53	85	41.1063
ccccacccucccugaccuccacccucccuccc	chr20:31150966-31151227(-)$1	261	157	189	41.6382
cccccuccucccuccccucaucccucuccccu	chr19:56173632-56173926(+)$1	294	105	137	38.8723
cuucccucuccgacccucuuccucucccuccc	chr1:20812389-20812635(-)$1	246	0	32	34.5106

#otherMatches

#Struct PSSM
::::::::::::::::::::::::::::::::	chr5:39006635-39006924(-)$1	289	99	131	43.6595
::::::::::::::::::::::::::::::ii	chr2:32221101-32221388(-)$1	287	135	167	39.6170
::::::::::::::::::::::::::::::::	chr3:71484234-71484496(-)$1	262	12	44	58.7659
::::::::::::::::::::::::::::::::	chr16:16464464-16464745(+)$1	281	247	279	36.0000
::::::::::::::::::::::::::::::::	chr1:20812519-20812734(-)$1	215	99	131	34.5106
::::::::::::::::::::::::::::::::	chr5:59523208-59523458(-)$1	250	7	39	43.4468
bcccBBDDDD}FFFFFF}DDDD}DDDDeeeee	chr2:85766449-85766860(+)$1	411	238	270	37.7021
b:::::::::::::::::::::::::::::::	chr7:97808808-97809112(+)$1	304	75	107	53.0212
::::::::::::::::::::::::::::::::	chr9:133475405-133475679(+)$1	274	75	107	54.8297
::::::::::::::::::::::::::::::::	chr1:8664483-8664755(-)$1	272	65	97	54.8297
::::::::::::::::::::::::::::::::	chr8:62473328-62473657(-)$1	329	1	33	53.9787
::::::::::::::::::::::::::::::::	chr17:80595941-80596184(-)$1	243	66	98	45.5744
88888888ccc]bbeeeee333accc]bb>>>	chr12:133530917-133531174(-)$1	257	120	152	43.6595
::::::::::::::::::::::::::::::::	chr6:119194179-119194461(-)$1	282	92	124	46.5319
::::::::::::::::::::::::::::::::	chr12:50938981-50939228(+)$1	247	110	142	51.4255
::::::::::::::::::::::::::::::::	chr11:70861310-70861564(-)$1	254	157	189	40.5744
BB::::::::::::::::::eeeee####eee	chr3:32914475-32914715(+)$1	240	82	114	60.2553
C{FFFFFF:::EEEEEKKCCCeeeeeqqqqqq	chr6:114292009-114292261(-)$1	252	34	66	34.9361
::::::::::::::::::::::::::::::::	chr9:14778460-14778709(-)$1	249	5	37	41.0000
>>>>>>>>>>dddd22bb]hhhhhhhh]bb:B	chr5:154137167-154137436(+)$1	269	167	199	39.0851
ssssssssa]dddd:::::::::GGGGGGGLL	chr11:2160118-2160342(-)$1	224	39	71	34.4042
::::::::::::::::::::::::::::::::	chr20:42176537-42176875(+)$1	338	59	91	35.8936
qqqqqdddd:::::::::::::::::::::::	chr3:171910879-171911133(+)$1	254	13	45	45.4680
::::::::::::::::::::::::::::::::	chr7:29345357-29345644(+)$1	287	23	55	37.3829
444ffffff:::::::::::::::::::::::	chr16:78493895-78494176(+)$1	281	111	143	38.4468
eeeee:::::::::::::::::::::::::::	chr2:131893642-131893935(+)$1	293	88	120	52.1702
::::::::::::::::::::::::::::::::	chr6:143129705-143129989(-)$1	284	198	230	41.8510
dd666666ccc:::::::::::::::::::::	chr12:132579211-132579440(+)$1	229	132	164	37.4893
:::::::::::::::::CCCMMMMDDDD::::	chr3:136392806-136393050(-)$1	244	16	48	60.8936
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:117175317-117175616(-)$1	299	165	197	42.9148
@@EEEEE:::::::::::::::::::::::::	chr16:81507786-81508027(+)$1	241	203	235	34.6170
::::::::::::::::::::::::::::::::	chr12:81607338-81607607(+)$1	269	24	56	44.2978
ppppdddd55555bbdddd7777777dddd]f	chr2:61764857-61765118(-)$1	261	112	144	34.7234
::::::::::::::::::::::::::::::::	chr22:24543260-24543500(+)$1	240	16	48	55.2553
:::::::::::::::::::eeeee####bb%%	chr2:101455346-101455615(+)$1	269	118	150	38.9787
:::::::::::::::::::::::::::::::H	chr2:105908903-105909213(-)$1	310	79	111	41.4255
::::::::::::::::::::::::::::::::	chr6:64398106-64398358(+)$1	252	43	75	46.6382
4bb]bb]dddd22bb4444ddddffffff333	chr17:45727412-45727662(+)$1	250	76	108	35.6808
g:::::::::::CCCYYBBZZZCCC?????CC	chr7:5409039-5409365(-)$1	326	132	164	43.3404
::::::::::::::::::::FFFFFF::::::	chr17:80642944-80643222(-)$1	278	91	123	38.8723
::::::::::::::::::::::::::::::::	chr1:10126048-10126322(+)$1	274	31	63	55.1489
:::::::::::::dddd[a^^^^^^^^^^^^^	chr6:52851685-52852003(-)$1	318	137	169	34.0851
::::::::::::::::::::::::::::::::	chr6:38011251-38011550(+)$1	299	25	57	43.1276
::::::::::::::::::::::::::::::::	chr13:94293040-94293304(+)$1	264	53	85	41.1063
::::::::::::::::::::::::::::::::	chr20:31150966-31151227(-)$1	261	157	189	41.6382
::::::::::::::::::::::::::::::::	chr19:56173632-56173926(+)$1	294	105	137	38.8723
:::::::::::EEEEE::::::::::::::::	chr1:20812389-20812635(-)$1	246	0	32	34.5106

#DB
................................	chr5:39006635-39006924(-)$1	1	99	131	43.6595
..............................((	chr2:32221101-32221388(-)$1	1	135	167	39.6170
................................	chr3:71484234-71484496(-)$1	1	12	44	58.7659
................................	chr16:16464464-16464745(+)$1	1	247	279	36.0000
................................	chr1:20812519-20812734(-)$1	1	99	131	34.5106
................................	chr5:59523208-59523458(-)$1	1	7	39	43.4468
)))))))))).)))))).)))).))))(((((	chr2:85766449-85766860(+)$1	1	238	270	37.7021
)...............................	chr7:97808808-97809112(+)$1	1	75	107	53.0212
................................	chr9:133475405-133475679(+)$1	1	75	107	54.8297
................................	chr1:8664483-8664755(-)$1	1	65	97	54.8297
................................	chr8:62473328-62473657(-)$1	1	1	33	53.9787
................................	chr17:80595941-80596184(-)$1	1	66	98	45.5744
........))).)))))))...)))).))...	chr12:133530917-133531174(-)$1	1	120	152	43.6595
................................	chr6:119194179-119194461(-)$1	1	92	124	46.5319
................................	chr12:50938981-50939228(+)$1	1	110	142	51.4255
................................	chr11:70861310-70861564(-)$1	1	157	189	40.5744
((..................(((((....(((	chr3:32914475-32914715(+)$1	1	82	114	60.2553
(.((((((...(((((..((((((((......	chr6:114292009-114292261(-)$1	1	34	66	34.9361
................................	chr9:14778460-14778709(-)$1	1	5	37	41.0000
..........))))..)).)))))))).)).)	chr5:154137167-154137436(+)$1	1	167	199	39.0851
........).)))).........(((((((..	chr11:2160118-2160342(-)$1	1	39	71	34.4042
................................	chr20:42176537-42176875(+)$1	1	59	91	35.8936
.....)))).......................	chr3:171910879-171911133(+)$1	1	13	45	45.4680
................................	chr7:29345357-29345644(+)$1	1	23	55	37.3829
...)))))).......................	chr16:78493895-78494176(+)$1	1	111	143	38.4468
)))))...........................	chr2:131893642-131893935(+)$1	1	88	120	52.1702
................................	chr6:143129705-143129989(-)$1	1	198	230	41.8510
))......))).....................	chr12:132579211-132579440(+)$1	1	132	164	37.4893
.................(((....((((....	chr3:136392806-136393050(-)$1	1	16	48	60.8936
................................	chr12:117175317-117175616(-)$1	1	165	197	42.9148
..))))).........................	chr16:81507786-81508027(+)$1	1	203	235	34.6170
................................	chr12:81607338-81607607(+)$1	1	24	56	44.2978
....)))).....)))))).......)))).)	chr2:61764857-61765118(-)$1	1	112	144	34.7234
................................	chr22:24543260-24543500(+)$1	1	16	48	55.2553
...................(((((....((..	chr2:101455346-101455615(+)$1	1	118	150	38.9787
...............................(	chr2:105908903-105909213(-)$1	1	79	111	41.4255
................................	chr6:64398106-64398358(+)$1	1	43	75	46.6382
.)).)).))))..))....))))))))))...	chr17:45727412-45727662(+)$1	1	76	108	35.6808
)...........)))..))...))).....))	chr7:5409039-5409365(-)$1	1	132	164	43.3404
....................))))))......	chr17:80642944-80643222(-)$1	1	91	123	38.8723
................................	chr1:10126048-10126322(+)$1	1	31	63	55.1489
.............((((.(.............	chr6:52851685-52852003(-)$1	1	137	169	34.0851
................................	chr6:38011251-38011550(+)$1	1	25	57	43.1276
................................	chr13:94293040-94293304(+)$1	1	53	85	41.1063
................................	chr20:31150966-31151227(-)$1	1	157	189	41.6382
................................	chr19:56173632-56173926(+)$1	1	105	137	38.8723
...........(((((................	chr1:20812389-20812635(-)$1	1	0	32	34.5106

#PSSM
c : 0.44	u : 0.34	A : 0.08	C : 0.06	U : 0.06	
c : 0.61	u : 0.21	C : 0.10	G : 0.04	U : 0.02	
c : 0.68	u : 0.14	C : 0.08	U : 0.04	g : 0.02	A : 0.02	
c : 0.74	u : 0.12	C : 0.10	A : 0.02	
u : 0.68	c : 0.14	C : 0.06	U : 0.04	A : 0.02	g : 0.02	a : 0.02	
c : 0.70	u : 0.17	C : 0.06	G : 0.06	
c : 0.74	u : 0.17	C : 0.06	U : 0.02	
c : 0.89	u : 0.04	U : 0.02	C : 0.02	G : 0.02	
u : 0.65	c : 0.27	C : 0.04	U : 0.02	
c : 0.59	u : 0.31	U : 0.04	a : 0.02	C : 0.02	
c : 0.76	u : 0.17	C : 0.04	G : 0.02	
c : 0.78	C : 0.06	u : 0.06	g : 0.04	a : 0.04	
u : 0.65	c : 0.23	a : 0.04	U : 0.02	G : 0.02	C : 0.02	
c : 0.76	u : 0.12	C : 0.04	U : 0.02	a : 0.02	g : 0.02	
c : 0.68	u : 0.21	C : 0.04	U : 0.02	g : 0.02	a : 0.02	
c : 0.87	C : 0.06	u : 0.04	a : 0.02	
u : 0.63	c : 0.27	C : 0.04	A : 0.02	a : 0.02	
c : 0.78	u : 0.10	C : 0.06	g : 0.04	
c : 0.80	u : 0.10	C : 0.06	a : 0.02	
u : 0.46	c : 0.34	a : 0.08	g : 0.04	G : 0.02	C : 0.02	U : 0.02	
u : 0.57	c : 0.31	U : 0.04	G : 0.02	g : 0.02	a : 0.02	
c : 0.85	u : 0.08	C : 0.06	
c : 0.76	u : 0.14	C : 0.06	a : 0.02	
c : 0.87	u : 0.06	U : 0.02	A : 0.02	C : 0.02	
u : 0.87	c : 0.06	G : 0.04	U : 0.02	
c : 0.78	u : 0.12	C : 0.06	U : 0.02	
c : 0.72	u : 0.19	C : 0.04	U : 0.02	A : 0.02	
c : 0.85	C : 0.08	u : 0.04	a : 0.02	
u : 0.74	c : 0.12	U : 0.08	a : 0.04	
c : 0.70	u : 0.17	C : 0.06	a : 0.04	U : 0.02	
c : 0.85	C : 0.08	u : 0.06	
c : 0.74	u : 0.14	C : 0.08	g : 0.02	

#score	2042.638297872342
#seq	47
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_CDS_m2_run1.nuc.txt

#NT
CAG	chr17:27074892-27075158(+)$1	266	27	30	8.9999
cag	chr11:46822713-46823012(-)$1	299	8	11	8.9999
CAG	chr1:161130277-161130545(+)$1	268	5	8	8.9999
CAG	chr19:1274190-1274440(+)$1	250	62	65	8.9999
cag	chrX:48673642-48673912(+)$1	270	10	13	8.9999
CAG	chr8:144668908-144669165(-)$1	257	54	57	8.9999
CAG	chr9:140260958-140261229(-)$1	271	91	94	8.9999
CAG	chr18:690622-690880(-)$1	258	59	62	8.9999
CAG	chr12:48177862-48178145(-)$1	283	29	32	8.9999
CAG	chr17:40462352-40462643(+)$1	291	4	7	8.9999
CAG	chr12:56645734-56646023(-)$1	289	59	62	8.9999
CAG	chr1:171557364-171557656(+)$1	292	13	16	8.9999
CAG	chr3:48575930-48576205(-)$1	275	5	8	8.9999
CAG	chr15:30927580-30927817(+)$1	237	118	121	8.9999
CAG	chrX:153693224-153693519(+)$1	295	78	81	8.9999
CAG	chr2:220369771-220370087(+)$1	316	25	28	8.9999
CAG	chr4:2909317-2909590(+)$1	273	12	15	8.9999
CAG	chr9:134366656-134366944(+)$1	288	1	4	8.9999
CAG	chr1:180147780-180148081(+)$1	301	57	60	8.9999
CAG	chr19:1270991-1271237(+)$1	246	10	13	8.9999
CAG	chr17:7579454-7579738(-)$1	284	14	17	8.9999
CAG	chr8:144520096-144520402(-)$1	306	4	7	8.9999
CAG	chr22:50018411-50018668(-)$1	257	10	13	8.9999
CAG	chr16:20855792-20856087(+)$1	295	23	26	8.9999
CAG	chr9:130550108-130550356(+)$1	248	37	40	8.9999
CAG	chr3:141644274-141644510(+)$1	236	18	21	8.9999
CAG	chr7:150774381-150774657(-)$1	276	11	14	8.9999
CAG	chr12:49435212-49435473(-)$1	261	7	10	8.9999
CAG	chr9:123202110-123202419(-)$1	309	77	80	8.9999
CAG	chr7:2418610-2418890(+)$1	280	1	4	8.9999
CAG	chr22:19503895-19504156(+)$1	261	39	42	8.9999
CAG	chr1:45221561-45221849(+)$1	288	36	39	8.9999
CAG	chr13:111562985-111563276(-)$1	291	174	177	8.9999
CAG	chr13:45911543-45911753(-)$1	210	115	118	8.9999
CAG	chr11:653894-654190(-)$1	296	86	89	8.9999
CAG	chr19:2110769-2111039(-)$1	270	78	81	8.9999
CAG	chrX:153178945-153179198(-)$1	253	18	21	8.9999
CAG	chr17:79880939-79881234(-)$1	295	3	6	8.9999
CAG	chr1:153948254-153948536(-)$1	282	17	20	8.9999
CAG	chr17:7123938-7124188(+)$1	250	20	23	8.9999
CAG	chr10:73581669-73581922(-)$1	253	61	64	8.9999
CAG	chr16:89971197-89971419(+)$1	222	1	4	8.9999
CAG	chr8:41513125-41513417(-)$1	292	1	4	8.9999
CAG	chr16:28847476-28847741(+)$1	265	13	16	8.9999
CAG	chr21:47641774-47642040(-)$1	266	6	9	8.9999
CAG	chr6:31828281-31828547(-)$1	266	23	26	8.9999
CAG	chr5:6611047-6611350(-)$1	303	149	152	8.9999
CAG	chr1:155650066-155650322(-)$1	256	72	75	8.9999
CAG	chr2:97506126-97506412(-)$1	286	7	10	8.9999
CAG	chr1:145583980-145584268(+)$1	288	50	53	8.9999
CAG	chrX:153928208-153928500(-)$1	292	57	60	8.9999
CAG	chr2:232575275-232575543(+)$1	268	167	170	8.9999
CAG	chr1:109289279-109289510(+)$1	231	67	70	8.9999
CAG	chr6:32942094-32942379(+)$1	285	57	60	8.9999
CAG	chr4:1724985-1725280(+)$1	295	40	43	8.9999
CAG	chr7:45144160-45144464(-)$1	304	8	11	8.9999
CAG	chrX:153220869-153221172(-)$1	303	21	24	8.9999
CAG	chr1:150318727-150319011(+)$1	284	92	95	8.9999
cag	chr12:102116804-102117085(+)$1	281	72	75	8.9999
CAG	chr8:145109481-145109731(-)$1	250	50	53	8.9999
CAG	chr5:176859079-176859360(+)$1	281	36	39	8.9999
CAG	chr17:80054216-80054483(-)$1	267	21	24	8.9999
CAG	chr6:33264775-33265056(-)$1	281	13	16	8.9999
CAG	chr11:67048807-67049051(+)$1	244	66	69	8.9999
CAG	chr1:1018238-1018513(-)$1	275	18	21	8.9999
CAG	chr8:37976656-37976947(+)$1	291	71	74	8.9999
cag	chr20:33437762-33438018(-)$1	256	15	18	8.9999
CAG	chr19:39204950-39205220(+)$1	270	8	11	8.9999
CAG	chr1:45227863-45228110(+)$1	247	1	4	8.9999
CAG	chr5:137728709-137728979(+)$1	270	36	39	8.9999
CAG	chr12:132198475-132198759(+)$1	284	91	94	8.9999
CAG	chr16:23700701-23700932(+)$1	231	46	49	8.9999
CAG	chr19:7997705-7997974(-)$1	269	3	6	8.9999
CAG	chr3:183901084-183901401(+)$1	317	5	8	8.9999
CAG	chr3:9516630-9516855(+)$1	225	17	20	8.9999
CAG	chr17:76120135-76120380(-)$1	245	56	59	8.9999
CAG	chr1:47728634-47728937(-)$1	303	49	52	8.9999
CAG	chr12:120992377-120992663(+)$1	286	15	18	8.9999
CAG	chr17:17717603-17717900(-)$1	297	11	14	8.9999
CAG	chr11:9166522-9166814(-)$1	292	4	7	8.9999
CAG	chr12:57910855-57911114(-)$1	259	16	19	8.9999
CAG	chr19:50163971-50164238(-)$1	267	25	28	8.9999
CAG	chr2:54197793-54198038(-)$1	245	12	15	8.9999
CAG	chr1:155279415-155279704(+)$1	289	125	128	8.9999
CAG	chr7:100283803-100284046(-)$1	243	108	111	8.9999
CAG	chr22:32003766-32004050(+)$1	284	15	18	8.9999
CAG	chr22:19130022-19130305(-)$1	283	6	9	8.9999
CAG	chr3:126732704-126733001(+)$1	297	0	3	8.9999
CAG	chr20:30354185-30354492(+)$1	307	68	71	8.9999
CAG	chr1:892246-892552(-)$1	306	10	13	8.9999
CAG	chr12:104179064-104179400(-)$1	336	17	20	8.9999
CAG	chr1:2441474-2441745(-)$1	271	15	18	8.9999
CAG	chr1:235490089-235490387(-)$1	298	50	53	8.9999
CAG	chr19:1271400-1271667(+)$1	267	146	149	8.9999
CAG	chr1:228295450-228295707(-)$1	257	22	25	8.9999
CAG	chr7:128478502-128478763(+)$1	261	3	6	8.9999

#otherMatches

#Struct PSSM
EEE	chr16:448829-449109(+)$1	280	34	37	8.9999
eee	chr17:27074892-27075158(+)$1	266	27	30	8.9999
!ff	chr11:46822713-46823012(-)$1	299	8	11	8.9999
:::	chr1:161130277-161130545(+)$1	268	5	8	8.9999
ggg	chr19:1274190-1274440(+)$1	250	62	65	8.9999
ttt	chrX:48673642-48673912(+)$1	270	10	13	8.9999
fff	chr8:144668908-144669165(-)$1	257	54	57	8.9999
888	chr9:140260958-140261229(-)$1	271	91	94	8.9999
fff	chr18:690622-690880(-)$1	258	59	62	8.9999
ggg	chr12:48177862-48178145(-)$1	283	29	32	8.9999
fff	chr17:40462352-40462643(+)$1	291	4	7	8.9999
::h	chr12:56645734-56646023(-)$1	289	59	62	8.9999
ggg	chr1:171557364-171557656(+)$1	292	13	16	8.9999
DDD	chr3:48575930-48576205(-)$1	275	5	8	8.9999
>>>	chr15:30927580-30927817(+)$1	237	118	121	8.9999
===	chrX:153693224-153693519(+)$1	295	78	81	8.9999
ooo	chr2:220369771-220370087(+)$1	316	25	28	8.9999
bbp	chr4:2909317-2909590(+)$1	273	12	15	8.9999
ccc	chr9:134366656-134366944(+)$1	288	1	4	8.9999
ddd	chr1:180147780-180148081(+)$1	301	57	60	8.9999
CKK	chr19:1270991-1271237(+)$1	246	10	13	8.9999
eee	chr17:7579454-7579738(-)$1	284	14	17	8.9999
ggg	chr8:144520096-144520402(-)$1	306	4	7	8.9999
EEE	chr22:50018411-50018668(-)$1	257	10	13	8.9999
^^^	chr16:20855792-20856087(+)$1	295	23	26	8.9999
fff	chr9:130550108-130550356(+)$1	248	37	40	8.9999
:cc	chr3:141644274-141644510(+)$1	236	18	21	8.9999
C:e	chr7:150774381-150774657(-)$1	276	11	14	8.9999
B::	chr12:49435212-49435473(-)$1	261	7	10	8.9999
CCC	chr9:123202110-123202419(-)$1	309	77	80	8.9999
ggg	chr7:2418610-2418890(+)$1	280	1	4	8.9999
ddd	chr22:19503895-19504156(+)$1	261	39	42	8.9999
GBB	chr1:45221561-45221849(+)$1	288	36	39	8.9999
d[b	chr13:111562985-111563276(-)$1	291	174	177	8.9999
ddd	chr13:45911543-45911753(-)$1	210	115	118	8.9999
dd!	chr11:653894-654190(-)$1	296	86	89	8.9999
ddd	chr19:2110769-2111039(-)$1	270	78	81	8.9999
eee	chrX:153178945-153179198(-)$1	253	18	21	8.9999
EEE	chr17:79880939-79881234(-)$1	295	3	6	8.9999
ddd	chr1:153948254-153948536(-)$1	282	17	20	8.9999
BB{	chr17:7123938-7124188(+)$1	250	20	23	8.9999
GGG	chr10:73581669-73581922(-)$1	253	61	64	8.9999
::C	chr16:89971197-89971419(+)$1	222	1	4	8.9999
ddd	chr8:41513125-41513417(-)$1	292	1	4	8.9999
E==	chr16:28847476-28847741(+)$1	265	13	16	8.9999
ddd	chr21:47641774-47642040(-)$1	266	6	9	8.9999
eee	chr6:31828281-31828547(-)$1	266	23	26	8.9999
eee	chr5:6611047-6611350(-)$1	303	149	152	8.9999
CCC	chr1:155650066-155650322(-)$1	256	72	75	8.9999
DDJ	chr2:97506126-97506412(-)$1	286	7	10	8.9999
mmc	chr1:145583980-145584268(+)$1	288	50	53	8.9999
LGG	chrX:153928208-153928500(-)$1	292	57	60	8.9999
b]c	chr2:232575275-232575543(+)$1	268	167	170	8.9999
a[f	chr1:109289279-109289510(+)$1	231	67	70	8.9999
ECC	chr6:32942094-32942379(+)$1	285	57	60	8.9999
:::	chr4:1724985-1725280(+)$1	295	40	43	8.9999
F:h	chr7:45144160-45144464(-)$1	304	8	11	8.9999
ooo	chrX:153220869-153221172(-)$1	303	21	24	8.9999
ELL	chr1:150318727-150319011(+)$1	284	92	95	8.9999
dGG	chr12:102116804-102117085(+)$1	281	72	75	8.9999
{EE	chr8:145109481-145109731(-)$1	250	50	53	8.9999
fff	chr5:176859079-176859360(+)$1	281	36	39	8.9999
llb	chr17:80054216-80054483(-)$1	267	21	24	8.9999
fff	chr6:33264775-33265056(-)$1	281	13	16	8.9999
FFF	chr11:67048807-67049051(+)$1	244	66	69	8.9999
GGG	chr1:1018238-1018513(-)$1	275	18	21	8.9999
DKK	chr8:37976656-37976947(+)$1	291	71	74	8.9999
ddd	chr20:33437762-33438018(-)$1	256	15	18	8.9999
LLF	chr19:39204950-39205220(+)$1	270	8	11	8.9999
b[f	chr1:45227863-45228110(+)$1	247	1	4	8.9999
iii	chr5:137728709-137728979(+)$1	270	36	39	8.9999
NNN	chr12:132198475-132198759(+)$1	284	91	94	8.9999
eee	chr16:23700701-23700932(+)$1	231	46	49	8.9999
CCC	chr19:7997705-7997974(-)$1	269	3	6	8.9999
::c	chr3:183901084-183901401(+)$1	317	5	8	8.9999
C:c	chr3:9516630-9516855(+)$1	225	17	20	8.9999
ddd	chr17:76120135-76120380(-)$1	245	56	59	8.9999
^^h	chr1:47728634-47728937(-)$1	303	49	52	8.9999
ggg	chr12:120992377-120992663(+)$1	286	15	18	8.9999
KKF	chr17:17717603-17717900(-)$1	297	11	14	8.9999
ddd	chr11:9166522-9166814(-)$1	292	4	7	8.9999
ccc	chr12:57910855-57911114(-)$1	259	16	19	8.9999
bb[	chr19:50163971-50164238(-)$1	267	25	28	8.9999
mmm	chr2:54197793-54198038(-)$1	245	12	15	8.9999
:ff	chr1:155279415-155279704(+)$1	289	125	128	8.9999
GGd	chr7:100283803-100284046(-)$1	243	108	111	8.9999
ddd	chr22:32003766-32004050(+)$1	284	15	18	8.9999
hhh	chr22:19130022-19130305(-)$1	283	6	9	8.9999
eee	chr3:126732704-126733001(+)$1	297	0	3	8.9999
OOD	chr20:30354185-30354492(+)$1	307	68	71	8.9999
d!!	chr1:892246-892552(-)$1	306	10	13	8.9999
!!c	chr12:104179064-104179400(-)$1	336	17	20	8.9999
ppp	chr1:2441474-2441745(-)$1	271	15	18	8.9999
mmm	chr1:235490089-235490387(-)$1	298	50	53	8.9999
===	chr19:1271400-1271667(+)$1	267	146	149	8.9999
:CC	chr1:228295450-228295707(-)$1	257	22	25	8.9999
FFF	chr7:128478502-128478763(+)$1	261	3	6	8.9999

#DB
(((	chr16:448829-449109(+)$1	1	34	37	8.9999
)))	chr17:27074892-27075158(+)$1	1	27	30	8.9999
.((	chr11:46822713-46823012(-)$1	1	8	11	8.9999
...	chr1:161130277-161130545(+)$1	1	5	8	8.9999
)))	chr19:1274190-1274440(+)$1	1	62	65	8.9999
...	chrX:48673642-48673912(+)$1	1	10	13	8.9999
(((	chr8:144668908-144669165(-)$1	1	54	57	8.9999
...	chr9:140260958-140261229(-)$1	1	91	94	8.9999
)))	chr18:690622-690880(-)$1	1	59	62	8.9999
(((	chr12:48177862-48178145(-)$1	1	29	32	8.9999
(((	chr17:40462352-40462643(+)$1	1	4	7	8.9999
..(	chr12:56645734-56646023(-)$1	1	59	62	8.9999
(((	chr1:171557364-171557656(+)$1	1	13	16	8.9999
(((	chr3:48575930-48576205(-)$1	1	5	8	8.9999
...	chr15:30927580-30927817(+)$1	1	118	121	8.9999
(((	chrX:153693224-153693519(+)$1	1	78	81	8.9999
...	chr2:220369771-220370087(+)$1	1	25	28	8.9999
((.	chr4:2909317-2909590(+)$1	1	12	15	8.9999
(((	chr9:134366656-134366944(+)$1	1	1	4	8.9999
(((	chr1:180147780-180148081(+)$1	1	57	60	8.9999
(..	chr19:1270991-1271237(+)$1	1	10	13	8.9999
(((	chr17:7579454-7579738(-)$1	1	14	17	8.9999
(((	chr8:144520096-144520402(-)$1	1	4	7	8.9999
(((	chr22:50018411-50018668(-)$1	1	10	13	8.9999
...	chr16:20855792-20856087(+)$1	1	23	26	8.9999
(((	chr9:130550108-130550356(+)$1	1	37	40	8.9999
.((	chr3:141644274-141644510(+)$1	1	18	21	8.9999
(.(	chr7:150774381-150774657(-)$1	1	11	14	8.9999
(..	chr12:49435212-49435473(-)$1	1	7	10	8.9999
(((	chr9:123202110-123202419(-)$1	1	77	80	8.9999
(((	chr7:2418610-2418890(+)$1	1	1	4	8.9999
)))	chr22:19503895-19504156(+)$1	1	39	42	8.9999
(((	chr1:45221561-45221849(+)$1	1	36	39	8.9999
(.(	chr13:111562985-111563276(-)$1	1	174	177	8.9999
)))	chr13:45911543-45911753(-)$1	1	115	118	8.9999
((.	chr11:653894-654190(-)$1	1	86	89	8.9999
(((	chr19:2110769-2111039(-)$1	1	78	81	8.9999
(((	chrX:153178945-153179198(-)$1	1	18	21	8.9999
(((	chr17:79880939-79881234(-)$1	1	3	6	8.9999
(((	chr1:153948254-153948536(-)$1	1	17	20	8.9999
((.	chr17:7123938-7124188(+)$1	1	20	23	8.9999
(((	chr10:73581669-73581922(-)$1	1	61	64	8.9999
..(	chr16:89971197-89971419(+)$1	1	1	4	8.9999
(((	chr8:41513125-41513417(-)$1	1	1	4	8.9999
(((	chr16:28847476-28847741(+)$1	1	13	16	8.9999
(((	chr21:47641774-47642040(-)$1	1	6	9	8.9999
(((	chr6:31828281-31828547(-)$1	1	23	26	8.9999
)))	chr5:6611047-6611350(-)$1	1	149	152	8.9999
(((	chr1:155650066-155650322(-)$1	1	72	75	8.9999
(((	chr2:97506126-97506412(-)$1	1	7	10	8.9999
..)	chr1:145583980-145584268(+)$1	1	50	53	8.9999
.((	chrX:153928208-153928500(-)$1	1	57	60	8.9999
).)	chr2:232575275-232575543(+)$1	1	167	170	8.9999
(.(	chr1:109289279-109289510(+)$1	1	67	70	8.9999
(((	chr6:32942094-32942379(+)$1	1	57	60	8.9999
...	chr4:1724985-1725280(+)$1	1	40	43	8.9999
(.(	chr7:45144160-45144464(-)$1	1	8	11	8.9999
...	chrX:153220869-153221172(-)$1	1	21	24	8.9999
(..	chr1:150318727-150319011(+)$1	1	92	95	8.9999
)((	chr12:102116804-102117085(+)$1	1	72	75	8.9999
.((	chr8:145109481-145109731(-)$1	1	50	53	8.9999
)))	chr5:176859079-176859360(+)$1	1	36	39	8.9999
..)	chr17:80054216-80054483(-)$1	1	21	24	8.9999
(((	chr6:33264775-33265056(-)$1	1	13	16	8.9999
(((	chr11:67048807-67049051(+)$1	1	66	69	8.9999
(((	chr1:1018238-1018513(-)$1	1	18	21	8.9999
(..	chr8:37976656-37976947(+)$1	1	71	74	8.9999
(((	chr20:33437762-33438018(-)$1	1	15	18	8.9999
..(	chr19:39204950-39205220(+)$1	1	8	11	8.9999
(.(	chr1:45227863-45228110(+)$1	1	1	4	8.9999
(((	chr5:137728709-137728979(+)$1	1	36	39	8.9999
...	chr12:132198475-132198759(+)$1	1	91	94	8.9999
(((	chr16:23700701-23700932(+)$1	1	46	49	8.9999
(((	chr19:7997705-7997974(-)$1	1	3	6	8.9999
..(	chr3:183901084-183901401(+)$1	1	5	8	8.9999
(.(	chr3:9516630-9516855(+)$1	1	17	20	8.9999
)))	chr17:76120135-76120380(-)$1	1	56	59	8.9999
..)	chr1:47728634-47728937(-)$1	1	49	52	8.9999
(((	chr12:120992377-120992663(+)$1	1	15	18	8.9999
..(	chr17:17717603-17717900(-)$1	1	11	14	8.9999
(((	chr11:9166522-9166814(-)$1	1	4	7	8.9999
)))	chr12:57910855-57911114(-)$1	1	16	19	8.9999
((.	chr19:50163971-50164238(-)$1	1	25	28	8.9999
...	chr2:54197793-54198038(-)$1	1	12	15	8.9999
.((	chr1:155279415-155279704(+)$1	1	125	128	8.9999
(((	chr7:100283803-100284046(-)$1	1	108	111	8.9999
)))	chr22:32003766-32004050(+)$1	1	15	18	8.9999
(((	chr22:19130022-19130305(-)$1	1	6	9	8.9999
(((	chr3:126732704-126733001(+)$1	1	0	3	8.9999
..(	chr20:30354185-30354492(+)$1	1	68	71	8.9999
(..	chr1:892246-892552(-)$1	1	10	13	8.9999
..(	chr12:104179064-104179400(-)$1	1	17	20	8.9999
...	chr1:2441474-2441745(-)$1	1	15	18	8.9999
...	chr1:235490089-235490387(-)$1	1	50	53	8.9999
)))	chr19:1271400-1271667(+)$1	1	146	149	8.9999
.((	chr1:228295450-228295707(-)$1	1	22	25	8.9999
(((	chr7:128478502-128478763(+)$1	1	3	6	8.9999

#PSSM
C : 0.95	c : 0.04	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_UTR_m1_run2.nuc.txt

#NT
CUGGGGUGGGU	chr16:73081638-73081879(-)$1	241	105	116	20.2826
cuggggguggc	chr5:154136597-154136846(+)$1	249	28	39	13.4347
CUGGGGUGAGG	chr4:763946-764199(-)$1	253	106	117	18.5434
CCGCGGUGGGA	chr8:101963094-101963363(-)$1	269	3	14	12.8913
CUGUGGGGGGG	chr17:80192214-80192467(+)$1	253	95	106	15.0652
cggggguggcc	chr4:129732852-129733102(+)$1	250	4	15	13.5434
GUGGGGUGGGC	chr18:46066469-46066690(+)$1	221	197	208	18.5434
UUGGGAUGGGG	chr4:76597587-76597856(-)$1	269	255	266	14.9565
CUGGUGUGGGG	chr2:242254345-242254644(-)$1	299	111	122	17.5652
CUGGGCUGGCG	chr2:159314562-159314818(+)$1	256	117	128	13.7608
GUGGGGCGGGC	chr7:6522965-6523216(-)$1	251	96	107	15.4999
GAGGGGUGGGG	chr11:2158434-2158686(-)$1	252	90	101	16.6956
CAGGAGUGGGC	chr15:72520883-72521148(-)$1	265	103	114	13.1086
AGGGGGUGGGG	chr14:54421085-54421340(-)$1	255	59	70	16.0434
GUGGGGUGGGG	chr15:72521959-72522269(-)$1	310	76	87	19.8478
CGGGGGUGGGG	chr7:1577337-1577610(+)$1	273	33	44	19.1956
GUGGGGUGAGA	chr2:232574635-232574886(+)$1	251	74	85	14.8478
CUGGGGAGGGG	chr7:6522908-6523164(-)$1	256	191	202	19.1956
CUGGGGAGGGG	chr2:242751910-242752222(+)$1	312	77	88	19.1956
CGGGGGUGAGA	chr17:75316246-75316507(+)$1	261	88	99	14.1956
cugggGCGGGU	chr16:75281984-75282248(-)$1	264	62	73	17.2391
GUGGGGUGAGU	chr17:80192924-80193172(+)$1	248	176	187	14.6304
CUGGGAGGGGG	chr4:1950212-1950508(+)$1	296	60	71	15.0652
CUGGGGAGAGC	chr7:2685063-2685309(+)$1	246	119	130	14.4130
CUGGGGGAGGG	chr19:41770851-41771105(+)$1	254	53	64	14.6304
CUGGCGUGGGA	chr17:7476459-7476731(+)$1	272	20	31	16.1521
AGGGGGUGGGG	chr17:80192638-80192897(+)$1	259	73	84	16.0434
gaggggUGGGA	chr17:75318617-75318871(+)$1	254	137	148	15.1739
CUGUGGUGUGU	chr20:62566493-62566717(+)$1	224	33	44	12.4565
CUGGGAUGGGG	chr11:66394082-66394403(+)$1	321	64	75	18.1086
UUGGGGAGGGU	chr12:31478509-31478789(-)$1	280	50	61	14.3043
cugggccgggg	chr10:977208-977498(-)$1	290	251	262	15.0652
GUGGGGUGGAC	chr19:575271-575533(+)$1	262	10	21	14.1956
CUGGGCCGGGA	chr2:241499731-241499989(-)$1	258	51	62	13.5434
CGGAGGUGGGU	chr20:36155856-36156134(-)$1	278	154	165	13.2173
CCGGGGUGUGC	chr9:127020529-127020798(+)$1	269	46	57	13.4347
cuggggucggc	chr16:75281748-75282081(-)$1	333	40	51	16.4782
CUGUGGUGGGG	chr17:80192427-80192681(+)$1	254	69	80	18.1086
GUGGGGUGGGG	chr17:80192802-80193066(+)$1	264	101	112	19.8478
CUGUGGAGGGA	chr12:76477571-76477864(-)$1	293	24	35	13.7608
CGGGGGAGGGC	chr16:87362540-87362793(-)$1	253	176	187	15.0652
CUGGGGUUGAG	chr10:102759197-102759456(+)$1	259	105	116	13.4347
GUGGGGUGAGA	chr2:223726320-223726589(+)$1	269	120	131	14.8478
CAAGGGUGGGG	chr2:10443794-10444035(+)$1	241	40	51	14.0869
CUGGCGUCGGG	chr12:31477060-31477370(-)$1	310	36	47	13.4347

#otherMatches

#Struct PSSM
%%%%%iiiiii	chr8:144678733-144678978(-)$1	245	94	105	15.7173
ffDDDD}CCC}	chr16:73081638-73081879(-)$1	241	105	116	20.2826
======DDDD{	chr5:154136597-154136846(+)$1	249	28	39	13.4347
DDDEEEEE{CC	chr4:763946-764199(-)$1	253	106	117	18.5434
ee[bb[hhhhh	chr8:101963094-101963363(-)$1	269	3	14	12.8913
f!!eeeee[bb	chr17:80192214-80192467(+)$1	253	95	106	15.0652
iiiiiiiippp	chr4:129732852-129733102(+)$1	250	4	15	13.5434
BB}JJJJJJJJ	chr18:46066469-46066690(+)$1	221	197	208	18.5434
B}DDDD}FFFF	chr4:76597587-76597856(-)$1	269	255	266	14.9565
rrrrrrrdddd	chr2:242254345-242254644(-)$1	299	111	122	17.5652
hhhhhhccc[a	chr2:159314562-159314818(+)$1	256	117	128	13.7608
gggggg$$$$$	chr7:6522965-6523216(-)$1	251	96	107	15.4999
EEEEDDDDLLL	chr11:2158434-2158686(-)$1	252	90	101	16.6956
ddd]a]affff	chr15:72520883-72521148(-)$1	265	103	114	13.1086
3a]a]dddd]c	chr14:54421085-54421340(-)$1	255	59	70	16.0434
CCKKFFFFFF:	chr15:72521959-72522269(-)$1	310	76	87	19.8478
DDD{GGGGGGG	chr7:1577337-1577610(+)$1	273	33	44	19.1956
FFFFbb[bbee	chr2:232574635-232574886(+)$1	251	74	85	14.8478
eeeee]hhhhh	chr7:6522908-6523164(-)$1	256	191	202	19.1956
EEEEEKKFFFF	chr2:242751910-242752222(+)$1	312	77	88	19.1956
ggggggg%%%%	chr17:75316246-75316507(+)$1	261	88	99	14.1956
e333iiiiiii	chr16:75281984-75282248(-)$1	264	62	73	17.2391
]a]a22iiiii	chr17:80192924-80193172(+)$1	248	176	187	14.6304
3dddd]fffff	chr4:1950212-1950508(+)$1	296	60	71	15.0652
e22dddd]bb2	chr7:2685063-2685309(+)$1	246	119	130	14.4130
ggggga22ccc	chr19:41770851-41771105(+)$1	254	53	64	14.6304
dd!!aqqqqqq	chr17:7476459-7476731(+)$1	272	20	31	16.1521
qqcccffffff	chr17:80192638-80192897(+)$1	259	73	84	16.0434
ffhhhhhhhh[	chr17:75318617-75318871(+)$1	254	137	148	15.1739
====EEEEE{C	chr20:62566493-62566717(+)$1	224	33	44	12.4565
EEEEEKKEEEE	chr11:66394082-66394403(+)$1	321	64	75	18.1086
ffffff:ccc[	chr12:31478509-31478789(-)$1	280	50	61	14.3043
ee[cccmmmmc	chr10:977208-977498(-)$1	290	251	262	15.0652
nnndddd]bbE	chr19:575271-575533(+)$1	262	10	21	14.1956
eeeee::====	chr2:241499731-241499989(-)$1	258	51	62	13.5434
fff]a]fffff	chr20:36155856-36156134(-)$1	278	154	165	13.2173
EEE{ALLLEEE	chr9:127020529-127020798(+)$1	269	46	57	13.4347
JJJJJJJJccc	chr16:75281748-75282081(-)$1	333	40	51	16.4782
KKA{CCC{EEE	chr17:80192427-80192681(+)$1	254	69	80	18.1086
gggg22ccc::	chr17:80192802-80193066(+)$1	264	101	112	19.8478
:GGGGGGG{BB	chr12:76477571-76477864(-)$1	293	24	35	13.7608
D::gggggggo	chr16:87362540-87362793(-)$1	253	176	187	15.0652
dA}CCC}EEEE	chr10:102759197-102759456(+)$1	259	105	116	13.4347
}DDDDccc"""	chr2:223726320-223726589(+)$1	269	120	131	14.8478
GGGGGG{CCCe	chr2:10443794-10444035(+)$1	241	40	51	14.0869
qqiiiiiiiii	chr12:31477060-31477370(-)$1	310	36	47	13.4347

#DB
.....((((((	chr8:144678733-144678978(-)$1	1	94	105	15.7173
)))))).))).	chr16:73081638-73081879(-)$1	1	105	116	20.2826
))))))((((.	chr5:154136597-154136846(+)$1	1	28	39	13.4347
((((((((.((	chr4:763946-764199(-)$1	1	106	117	18.5434
((.((.(((((	chr8:101963094-101963363(-)$1	1	3	14	12.8913
(..(((((.((	chr17:80192214-80192467(+)$1	1	95	106	15.0652
((((((((...	chr4:129732852-129733102(+)$1	1	4	15	13.5434
)).))))))))	chr18:46066469-46066690(+)$1	1	197	208	18.5434
).)))).))))	chr4:76597587-76597856(-)$1	1	255	266	14.9565
.......))))	chr2:242254345-242254644(-)$1	1	111	122	17.5652
))))))(((.(	chr2:159314562-159314818(+)$1	1	117	128	13.7608
((((((.....	chr7:6522965-6523216(-)$1	1	96	107	15.4999
((((((((...	chr11:2158434-2158686(-)$1	1	90	101	16.6956
))).).)))))	chr15:72520883-72521148(-)$1	1	103	114	13.1086
.).).)))).)	chr14:54421085-54421340(-)$1	1	59	70	16.0434
((..((((((.	chr15:72521959-72522269(-)$1	1	76	87	19.8478
(((.(((((((	chr7:1577337-1577610(+)$1	1	33	44	19.1956
((((((.((((	chr2:232574635-232574886(+)$1	1	74	85	14.8478
))))).)))))	chr7:6522908-6523164(-)$1	1	191	202	19.1956
(((((..((((	chr2:242751910-242752222(+)$1	1	77	88	19.1956
(((((((....	chr17:75316246-75316507(+)$1	1	88	99	14.1956
)...)))))))	chr16:75281984-75282248(-)$1	1	62	73	17.2391
.).)..)))))	chr17:80192924-80193172(+)$1	1	176	187	14.6304
.)))).)))))	chr4:1950212-1950508(+)$1	1	60	71	15.0652
)..)))).)).	chr7:2685063-2685309(+)$1	1	119	130	14.4130
))))))..)))	chr19:41770851-41771105(+)$1	1	53	64	14.6304
((..(......	chr17:7476459-7476731(+)$1	1	20	31	16.1521
..)))((((((	chr17:80192638-80192897(+)$1	1	73	84	16.0434
))((((((((.	chr17:75318617-75318871(+)$1	1	137	148	15.1739
))))(((((.(	chr20:62566493-62566717(+)$1	1	33	44	12.4565
(((((..((((	chr11:66394082-66394403(+)$1	1	64	75	18.1086
)))))).(((.	chr12:31478509-31478789(-)$1	1	50	61	14.3043
((.(((....)	chr10:977208-977498(-)$1	1	251	262	15.0652
...)))).))(	chr19:575271-575533(+)$1	1	10	21	14.1956
)))))..((((	chr2:241499731-241499989(-)$1	1	51	62	13.5434
))).).)))))	chr20:36155856-36156134(-)$1	1	154	165	13.2173
(((.(...(((	chr9:127020529-127020798(+)$1	1	46	57	13.4347
(((((((((((	chr16:75281748-75282081(-)$1	1	40	51	16.4782
..(.(((.(((	chr17:80192427-80192681(+)$1	1	69	80	18.1086
))))..)))..	chr17:80192802-80193066(+)$1	1	101	112	19.8478
.(((((((.((	chr12:76477571-76477864(-)$1	1	24	35	13.7608
)..(((((((.	chr16:87362540-87362793(-)$1	1	176	187	15.0652
)).))).))))	chr10:102759197-102759456(+)$1	1	105	116	13.4347
.))))(((...	chr2:223726320-223726589(+)$1	1	120	131	14.8478
((((((.((((	chr2:10443794-10444035(+)$1	1	40	51	14.0869
..)))))))))	chr12:31477060-31477370(-)$1	1	36	47	13.4347

#PSSM
C : 0.56	G : 0.21	c : 0.10	U : 0.04	A : 0.04	g : 0.02	
U : 0.63	G : 0.13	u : 0.08	A : 0.06	C : 0.04	g : 0.02	a : 0.02	
G : 0.84	g : 0.13	A : 0.02	
G : 0.73	g : 0.13	U : 0.08	C : 0.02	A : 0.02	
G : 0.78	g : 0.13	C : 0.04	U : 0.02	A : 0.02	
G : 0.76	g : 0.08	A : 0.06	C : 0.04	U : 0.02	c : 0.02	
U : 0.65	A : 0.13	G : 0.06	C : 0.06	u : 0.04	g : 0.02	c : 0.02	
G : 0.84	g : 0.04	u : 0.02	A : 0.02	c : 0.02	U : 0.02	C : 0.02	
G : 0.73	A : 0.13	g : 0.08	U : 0.04	
G : 0.84	g : 0.06	A : 0.04	c : 0.02	C : 0.02	
G : 0.45	A : 0.17	C : 0.15	U : 0.13	c : 0.06	g : 0.02	

#score	718.8695652173909
#seq	46
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_transcript_m3_run2.nuc.txt

#NT
ccgccgccgccgccgccgccC	chr20:30865369-30865675(+)$1	306	158	179	38.1162
cgcccaccggcggccccgccc	chr19:2164055-2164365(+)$1	310	59	80	19.7441
GUcgcgccgccgccgccgccc	chr16:57220129-57220376(+)$1	247	181	202	28.6976
ccgcggcccuggccgccgcgc	chr13:113863820-113864091(+)$1	271	191	212	22.8837
GGCCCGCGGCUGCCGCCGCCA	chr17:1359324-1359641(-)$1	317	95	116	21.6046
CUGGAGCCGCCGCCGCCGCUG	chr11:14521201-14521485(-)$1	284	98	119	26.7209
cggcggccacggcggcggcca	chr17:38975031-38975393(-)$1	362	58	79	17.6511
GAGGCGCCGCCGCCGCCGCUG	chr4:83933779-83934128(-)$1	349	106	127	27.4186
CUGUCCCCGCCCCCUCUGCCU	chr2:71357177-71357458(-)$1	281	17	38	17.7674
CUGCCGCCGACAccgccgggc	chr2:62423151-62423423(+)$1	272	177	198	23.9302
ccccgggggcugccgucgccc	chr11:116658552-116658835(-)$1	283	160	181	17.0697
cugccgccgccACCGCCUCAG	chr6:2245931-2246210(+)$1	279	59	80	26.0232
CAGCCGCCGCCGACGCCUCCU	chr4:152246560-152246876(-)$1	316	230	251	26.4883
CAGCCGCCGGCACCGCCGCCU	chr12:122150596-122150919(+)$1	323	170	191	27.8837
cggccgccgccgccgccuccu	chr1:27022496-27022744(+)$1	248	174	195	30.7906
CCGCCGCAGCCUCUGUCGCGC	chr19:11708197-11708518(+)$1	321	163	184	21.3720
GUGCCGCCGCUGCCCCCGGGG	chr2:48010185-48010507(+)$1	322	284	305	20.6744
cggcggcUGCAGCGGCCGCCC	chr22:34316786-34317100(-)$1	314	280	301	23.3488
CUggggccgcccgcggcgccg	chr15:34875616-34875842(-)$1	226	171	192	19.5116
GCGCCGUCGCCGCCGCCUCCC	chr19:1408284-1408543(+)$1	259	59	80	28.2325
ACGCCAGCCCCCGCGCCGCCC	chr17:79980577-79980855(-)$1	278	230	251	18.3488
ccccugcccucgcccccgccc	chr3:42642372-42642589(+)$1	217	42	63	21.1395
gcgccgccgccgccgccgccU	chr8:119123802-119124168(-)$1	366	212	233	33.8139
GCGCCGCUGCCGCUGCUGCUG	chr5:52285109-52285384(+)$1	275	213	234	21.1395
CAGCCCUCGCGGCUGCAGCCC	chr17:76374735-76374995(+)$1	260	181	202	19.5116
CCGCCGCUCCCGCCGCAGCAG	chr13:26828258-26828522(+)$1	264	147	168	23.4651
cugccgccgccgccgccgccc	chr2:191513671-191513948(+)$1	277	129	150	37.5348
CUGCCACCGCCCCGGGCGACC	chr17:43128782-43129067(-)$1	285	230	251	19.5116
ccggcaccgccgccgccgccC	chr13:48877926-48878243(+)$1	317	182	203	31.8372
gcgccgcccgcgcugccgcgc	chr22:24666775-24667061(+)$1	286	233	254	24.2790
gggccgccaccgccgcggcgc	chr2:201171456-201171692(+)$1	236	98	119	25.5581
cucccuccgcccuccccgccc	chr20:52210189-52210475(-)$1	286	50	71	20.3255
CAGCGGCCGCCACUGCCGCUG	chr13:33160608-33160841(+)$1	233	187	208	23.6976
UCGCCGCCGCCGCCGCCGCAG	chr2:220435930-220436222(-)$1	292	65	86	30.7906
CUGCUGCAGCCGCCGGCGGGG	chr6:149638752-149639006(+)$1	254	107	128	18.5813
ccgcgcgcgccgcagcggccc	chr20:306111-306380(+)$1	269	4	25	21.8372
CUGGGGUcggcgccggcgccg	chr2:27255802-27256119(+)$1	317	139	160	19.2790
CGGCCGGCCCCUUCCCCGCCC	chr3:48470209-48470431(-)$1	222	14	35	20.0930
GGGUCUGCGCCGCCGCCGCGC	chr18:55711512-55711777(+)$1	265	80	101	22.1860
UCGGCCCGGCCGCCGCCGCAC	chr4:120375870-120376121(+)$1	251	193	214	22.5348
gcgccccccgcgcucccgccc	chr20:60718736-60719043(+)$1	307	17	38	20.3255
ccgcgccccccgccccggccc	chr20:62601047-62601384(-)$1	337	161	182	22.8837

#otherMatches

#Struct PSSM
ddddmmmmdddd22bbccc::	chr14:69445834-69446117(-)$1	283	154	175	26.9534
mmbb]bb]bb]bb:EEEEE}G	chr20:30865369-30865675(+)$1	306	158	179	38.1162
eeeemmmmeeeee::::::::	chr19:2164055-2164365(+)$1	310	59	80	19.7441
e22eeeee]a22bbccc[ccc	chr16:57220129-57220376(+)$1	247	181	202	28.6976
DD}A}FFFFFF}BB:hhhhhh	chr13:113863820-113864091(+)$1	271	191	212	22.8837
===========iiiiiiiii#	chr17:1359324-1359641(-)$1	317	95	116	21.6046
22hhhhhhhh]ffffff:===	chr11:14521201-14521485(-)$1	284	98	119	26.7209
bb!!dddd[ammmma]dddd]	chr17:38975031-38975393(-)$1	362	58	79	17.6511
44ccc]ccc==========A{	chr4:83933779-83934128(-)$1	349	106	127	27.4186
:::CCCHHHHHHHH{EEEEEF	chr2:71357177-71357458(-)$1	281	17	38	17.7674
FFFEEEEEYYGGGGGGG:FFF	chr2:62423151-62423423(+)$1	272	177	198	23.9302
eeeee22iiiiiiiii]cccc	chr11:116658552-116658835(-)$1	283	160	181	17.0697
====ccc[ccc[bb[ddddoo	chr6:2245931-2246210(+)$1	279	59	80	26.0232
g22dddd22ccc333ffffff	chr4:152246560-152246876(-)$1	316	230	251	26.4883
ddd]ccc22bb]cccbbeeee	chr12:122150596-122150919(+)$1	323	170	191	27.8837
}DDDD}DDDD}AYYBB:::gg	chr1:27022496-27022744(+)$1	248	174	195	30.7906
ccc!!bb!!eeeee[abba[i	chr19:11708197-11708518(+)$1	321	163	184	21.3720
FFFFFCCC}JJJJJJJJJJ:d	chr2:48010185-48010507(+)$1	322	284	305	20.6744
lhhhhhhhh22bb]eeeee::	chr22:34316786-34317100(-)$1	314	280	301	23.3488
DDDa[ggggggg[a[dddd!!	chr15:34875616-34875842(-)$1	226	171	192	19.5116
eee[bbmmmmbb]eeeeeccc	chr19:1408284-1408543(+)$1	259	59	80	28.2325
EEEEYYDDDDBBBB}DDDDFF	chr17:79980577-79980855(-)$1	278	230	251	18.3488
EEEE{BBLLLCCCEEEEEBBG	chr3:42642372-42642589(+)$1	217	42	63	21.1395
ddddccc]ddddggggggg]b	chr8:119123802-119124168(-)$1	366	212	233	33.8139
llccc]cccccc:CCC}EEEE	chr5:52285109-52285384(+)$1	275	213	234	21.1395
gggggnnnnnggggggg]ggg	chr17:76374735-76374995(+)$1	260	181	202	19.5116
iiiiiiiiicccdddd[bb[a	chr13:26828258-26828522(+)$1	264	147	168	23.4651
ddddd]bb]aa]bbccc]iii	chr2:191513671-191513948(+)$1	277	129	150	37.5348
fpppppppffffff]a55555	chr17:43128782-43129067(-)$1	285	230	251	19.5116
dddd####eeeee[abbbb[a	chr13:48877926-48878243(+)$1	317	182	203	31.8372
A}CCC}CCC}CCC}CCC}EEE	chr22:24666775-24667061(+)$1	286	233	254	24.2790
hhhhhhh22bbeeeeebbddd	chr2:201171456-201171692(+)$1	236	98	119	25.5581
:::GGGGGGGLLLBB::gggg	chr20:52210189-52210475(-)$1	286	50	71	20.3255
ffff!!bbeeeeeccccccnn	chr13:33160608-33160841(+)$1	233	187	208	23.6976
::DDDDEEEEEBB{BB{BB:d	chr2:220435930-220436222(-)$1	292	65	86	30.7906
FFFFF:::::ddddnnnnndd	chr6:149638752-149639006(+)$1	254	107	128	18.5813
::===========!!a!!ccc	chr20:306111-306380(+)$1	269	4	25	21.8372
dddd[ammmma]dddd]dddd	chr2:27255802-27256119(+)$1	317	139	160	19.2790
ddddbb[bbiiiiiiiii[bb	chr3:48470209-48470431(-)$1	222	14	35	20.0930
c]ahhhhhhhh:ccc!!ffff	chr18:55711512-55711777(+)$1	265	80	101	22.1860
eeeeeJJJJJJJJJJ:dddda	chr4:120375870-120376121(+)$1	251	193	214	22.5348
FFFFFF{CCC{CCCEEEEEDD	chr20:60718736-60719043(+)$1	307	17	38	20.3255
EEEECCCA}DDDD::dddd""	chr20:62601047-62601384(-)$1	337	161	182	22.8837

#DB
((((....))))..)))))..	chr14:69445834-69446117(-)$1	1	154	175	26.9534
..)).)).)).)).))))).)	chr20:30865369-30865675(+)$1	1	158	179	38.1162
((((....)))))........	chr19:2164055-2164365(+)$1	1	59	80	19.7441
)..))))).)..))(((.(((	chr16:57220129-57220376(+)$1	1	181	202	28.6976
)).).)))))).)).((((((	chr13:113863820-113864091(+)$1	1	191	212	22.8837
)))))))))))(((((((((.	chr17:1359324-1359641(-)$1	1	95	116	21.6046
..)))))))).)))))).(((	chr11:14521201-14521485(-)$1	1	98	119	26.7209
((..((((.(....).)))).	chr17:38975031-38975393(-)$1	1	58	79	17.6511
..))).)))))))))))))(.	chr4:83933779-83934128(-)$1	1	106	127	27.4186
...(((((((((((.((((((	chr2:71357177-71357458(-)$1	1	17	38	17.7674
))))))))..))))))).(((	chr2:62423151-62423423(+)$1	1	177	198	23.9302
)))))..))))))))).))))	chr11:116658552-116658835(-)$1	1	160	181	17.0697
))))(((.(((.((.((((..	chr6:2245931-2246210(+)$1	1	59	80	26.0232
)..))))..)))...))))))	chr4:152246560-152246876(-)$1	1	230	251	26.4883
))).)))..)).)))))))))	chr12:122150596-122150919(+)$1	1	170	191	27.8837
.)))).)))).)..))...((	chr1:27022496-27022744(+)$1	1	174	195	30.7906
(((..((..(((((.((((.(	chr19:11708197-11708518(+)$1	1	163	184	21.3720
)))))))).)))))))))).(	chr2:48010185-48010507(+)$1	1	284	305	20.6744
.))))))))..)).)))))..	chr22:34316786-34317100(-)$1	1	280	301	23.3488
)))(.(((((((.(.((((..	chr15:34875616-34875842(-)$1	1	171	192	19.5116
(((.((....)).)))))(((	chr19:1408284-1408543(+)$1	1	59	80	28.2325
))))..)))))))).))))))	chr17:79980577-79980855(-)$1	1	230	251	18.3488
((((.((...(((((((((((	chr3:42642372-42642589(+)$1	1	42	63	21.1395
))))))).))))))))))).)	chr8:119123802-119124168(-)$1	1	212	233	33.8139
..))).)))))).))).))))	chr5:52285109-52285384(+)$1	1	213	234	21.1395
(((((.....))))))).)))	chr17:76374735-76374995(+)$1	1	181	202	19.5116
((((((((((((((((.((.(	chr13:26828258-26828522(+)$1	1	147	168	23.4651
))))).)).)).))))).)))	chr2:191513671-191513948(+)$1	1	129	150	37.5348
(.......)))))).).....	chr17:43128782-43129067(-)$1	1	230	251	19.5116
((((....(((((.(((((.(	chr13:48877926-48878243(+)$1	1	182	203	31.8372
).))).))).))).))).)))	chr22:24666775-24667061(+)$1	1	233	254	24.2790
)))))))..)))))))(((((	chr2:201171456-201171692(+)$1	1	98	119	25.5581
...(((((((...((..((((	chr20:52210189-52210475(-)$1	1	50	71	20.3255
((((..(((((((((((((..	chr13:33160608-33160841(+)$1	1	187	208	23.6976
..(((((((((((.((.((.(	chr2:220435930-220436222(-)$1	1	65	86	30.7906
))))).....((((.....))	chr6:149638752-149639006(+)$1	1	107	128	18.5813
..(((((((((((..(..(((	chr20:306111-306380(+)$1	1	4	25	21.8372
((((.(....).)))).))))	chr2:27255802-27256119(+)$1	1	139	160	19.2790
((((((.(((((((((((.((	chr3:48470209-48470431(-)$1	1	14	35	20.0930
).))))))))).(((..((((	chr18:55711512-55711777(+)$1	1	80	101	22.1860
))))))))))))))).(((((	chr4:120375870-120376121(+)$1	1	193	214	22.5348
((((((.(((.((((((((((	chr20:60718736-60719043(+)$1	1	17	38	20.3255
)))))))).))))..((((..	chr20:62601047-62601384(-)$1	1	161	182	22.8837

#PSSM
C : 0.34	c : 0.32	G : 0.16	g : 0.09	U : 0.04	A : 0.02	
c : 0.23	U : 0.20	C : 0.16	A : 0.13	g : 0.11	G : 0.06	u : 0.06	
G : 0.51	g : 0.34	c : 0.11	C : 0.02	
C : 0.39	c : 0.39	G : 0.09	g : 0.06	U : 0.04	
C : 0.44	c : 0.27	g : 0.16	G : 0.04	A : 0.02	u : 0.02	U : 0.02	
G : 0.39	g : 0.32	C : 0.06	c : 0.06	a : 0.04	A : 0.04	u : 0.02	U : 0.02	
c : 0.41	C : 0.39	U : 0.06	G : 0.06	g : 0.04	
c : 0.44	C : 0.37	U : 0.06	G : 0.04	A : 0.04	g : 0.02	
G : 0.46	g : 0.30	c : 0.11	C : 0.06	a : 0.04	
C : 0.48	c : 0.32	g : 0.09	u : 0.04	A : 0.02	G : 0.02	
C : 0.41	c : 0.39	U : 0.06	g : 0.04	u : 0.02	A : 0.02	G : 0.02	
g : 0.39	G : 0.34	A : 0.09	C : 0.06	U : 0.04	c : 0.04	
C : 0.44	c : 0.39	U : 0.04	g : 0.04	A : 0.02	G : 0.02	u : 0.02	
C : 0.39	c : 0.37	U : 0.09	G : 0.04	u : 0.04	g : 0.02	a : 0.02	
G : 0.46	g : 0.34	c : 0.11	C : 0.04	U : 0.02	
C : 0.46	c : 0.39	g : 0.04	G : 0.04	u : 0.02	U : 0.02	
C : 0.44	c : 0.37	g : 0.09	U : 0.04	A : 0.04	
G : 0.46	g : 0.44	U : 0.06	u : 0.02	
C : 0.46	c : 0.44	G : 0.04	g : 0.02	A : 0.02	
c : 0.37	C : 0.25	g : 0.09	U : 0.09	A : 0.09	G : 0.09	
c : 0.30	C : 0.25	G : 0.20	U : 0.09	A : 0.04	g : 0.04	a : 0.02	u : 0.02	

#score	1031.5581395348831
#seq	43
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_transcript_m1_run2.nuc.txt

#NT
AUAAAAAAUGA	chr6:69474183-69474500(+)$1	317	52	63	15.6530
agcaaaaaagu	chr6:167407935-167408221(-)$1	286	38	49	14.6326
ACCAAAAAAGA	chr4:13605102-13605350(-)$1	248	138	149	16.3673
AAAAAAACAGU	chr2:109087823-109088099(+)$1	276	61	72	17.0816
caaaauaaagu	chr1:51350846-51351155(-)$1	309	1	12	15.0408
uuaaaaaaaga	chr1:245920256-245920576(-)$1	320	309	320	17.0816
AGAUAAAAAGG	chr18:2734615-2734860(+)$1	245	83	94	15.2448
aaaaaaaaaga	chr8:91393831-91394151(+)$1	320	107	118	23.6122
gaaaaaaaagu	chr5:43137446-43137687(+)$1	241	139	150	18.3061
aagaauaaaga	chr5:104709787-104710072(-)$1	285	20	31	16.1632
aaagaagaaga	chr10:74272809-74273077(-)$1	268	88	99	16.0612
aaauagaaagu	chr19:45365795-45366126(+)$1	331	51	62	14.9387
aaaaaaaaaga	chr8:91385033-91385321(+)$1	288	29	40	23.6122
aaauaaaaaaa	chr2:168741465-168741700(-)$1	235	57	68	15.8571
AAAAAAAAAGA	chr4:2330477-2330763(-)$1	286	223	234	23.6122
aaaaauaaaga	chr7:76223978-76224244(+)$1	266	34	45	20.3469
aaaaaagaagu	chr9:125960960-125961241(-)$1	281	0	11	17.6938
aaagaaaAAGG	chr6:147703143-147703461(+)$1	318	38	49	17.8979
aaaaaaaaaua	chr7:140527474-140527721(-)$1	247	8	19	19.4285
agaaauaaaga	chr17:5470872-5471169(-)$1	297	51	62	17.5918
acacaaaaaga	chr21:19967128-19967416(-)$1	288	271	282	16.7755
aaaaagaaaua	chr19:28977392-28977649(-)$1	257	0	11	16.1632
aaagaaaaaga	chr1:245921592-245921871(-)$1	279	141	152	20.0408
aaaaaaAAAGA	chr4:87911241-87911539(+)$1	298	241	252	23.6122
aaaaaagaagg	chr6:10940542-10940784(+)$1	242	189	200	17.4897
aaaaaaaaaga	chr21:39471606-39471896(-)$1	290	27	38	23.6122
GAAAAAAAAGA	chr2:209528424-209528707(+)$1	283	70	81	20.2448
aaaaaaauaga	chr6:69554776-69555067(+)$1	291	133	144	19.1224
AGAAAGAAAga	chr16:74353100-74353442(-)$1	342	13	24	17.5918
guaaaaaaagg	chr11:75740659-75740954(+)$1	295	79	90	14.9387
AGAUAAAAAGG	chr16:89030987-89031272(-)$1	285	148	159	15.2448
aaaaaggaaga	chr8:74640527-74640799(-)$1	272	172	183	16.3673
aaaaaaaaaaa	chr6:147621847-147622103(+)$1	256	244	255	19.3265
AAAAGAAUAGA	chr1:51097950-51098263(-)$1	313	92	103	14.8367
UAGAAAAAAGU	chr15:40914895-40915219(+)$1	324	4	15	14.1224
acaaaagaaga	chr20:1120511-1120794(+)$1	283	1	12	16.6734
aaaaaaaaaga	chr8:59538422-59538731(-)$1	309	72	83	23.6122
GAAAAUAAAGA	chr21:39439646-39439934(-)$1	288	136	147	16.9795
acagaaaaagg	chr21:20001349-20001642(-)$1	293	179	190	14.9387
agaagaaaagu	chr14:37485871-37486188(-)$1	317	91	102	14.6326
ccaaaaaaagu	chr22:48169758-48170019(+)$1	261	10	21	15.3469
uaaaacaaaga	chr8:91384489-91384784(+)$1	295	16	27	16.6734
AAAACAAAAGC	chr2:152320574-152320853(+)$1	279	177	188	16.3673
caauaaaaagg	chr7:140526570-140526798(-)$1	228	24	35	14.6326
agaaacaaagg	chr13:92997931-92998206(+)$1	275	165	176	15.1428
UAGAAAAAAGU	chr15:40914727-40914956(+)$1	229	172	183	14.1224
AAAAAAAAAGC	chr7:76219375-76219635(+)$1	260	133	144	20.8571
AAAAAGAAAUA	chr1:203769420-203769659(+)$1	239	150	161	16.1632

#otherMatches

#Struct PSSM
GQQQQQQQQEE	chr8:93852025-93852313(-)$1	288	141	152	15.9591
:::::::::::	chr6:69474183-69474500(+)$1	317	52	63	15.6530
"dddd!!dddd	chr6:167407935-167408221(-)$1	286	38	49	14.6326
ddddqqqqqqq	chr4:13605102-13605350(-)$1	248	138	149	16.3673
::::::::iii	chr2:109087823-109088099(+)$1	276	61	72	17.0816
::::::::ddd	chr1:51350846-51351155(-)$1	309	1	12	15.0408
:::::::::::	chr1:245920256-245920576(-)$1	320	309	320	17.0816
::::::::::b	chr18:2734615-2734860(+)$1	245	83	94	15.2448
^^^^^^^^fff	chr8:91393831-91394151(+)$1	320	107	118	23.6122
dddpppppppd	chr5:43137446-43137687(+)$1	241	139	150	18.3061
gggggg:::::	chr5:104709787-104710072(-)$1	285	20	31	16.1632
oooooofffff	chr10:74272809-74273077(-)$1	268	88	99	16.0612
::::::::DDD	chr19:45365795-45366126(+)$1	331	51	62	14.9387
:::::::::bb	chr8:91385033-91385321(+)$1	288	29	40	23.6122
d(((((((((d	chr2:168741465-168741700(-)$1	235	57	68	15.8571
^^^^^^^^^^^	chr4:2330477-2330763(-)$1	286	223	234	23.6122
:::::::::ff	chr7:76223978-76224244(+)$1	266	34	45	20.3469
::::::::CCC	chr9:125960960-125961241(-)$1	281	0	11	17.6938
^^^^^^^^^^^	chr6:147703143-147703461(+)$1	318	38	49	17.8979
:::::::::::	chr7:140527474-140527721(-)$1	247	8	19	19.4285
[ddddpppppp	chr17:5470872-5471169(-)$1	297	51	62	17.5918
@@@@@@@@@@@	chr21:19967128-19967416(-)$1	288	271	282	16.7755
:::::::::::	chr19:28977392-28977649(-)$1	257	0	11	16.1632
:::::::::::	chr1:245921592-245921871(-)$1	279	141	152	20.0408
>>>>>>>>fff	chr4:87911241-87911539(+)$1	298	241	252	23.6122
zzzzzzzzzzz	chr6:10940542-10940784(+)$1	242	189	200	17.4897
uuccc4444dd	chr21:39471606-39471896(-)$1	290	27	38	23.6122
:::::::::::	chr2:209528424-209528707(+)$1	283	70	81	20.2448
:::::::::::	chr6:69554776-69555067(+)$1	291	133	144	19.1224
:::::::::::	chr16:74353100-74353442(-)$1	342	13	24	17.5918
^^^^^^^^^cc	chr11:75740659-75740954(+)$1	295	79	90	14.9387
^^^^^^^^^^^	chr16:89030987-89031272(-)$1	285	148	159	15.2448
===========	chr8:74640527-74640799(-)$1	272	172	183	16.3673
C::::::::::	chr6:147621847-147622103(+)$1	256	244	255	19.3265
::::eeeee[b	chr1:51097950-51098263(-)$1	313	92	103	14.8367
dqqqqqqqqdd	chr15:40914895-40915219(+)$1	324	4	15	14.1224
:::::::::ee	chr20:1120511-1120794(+)$1	283	1	12	16.6734
^^^^^^^^^^^	chr8:59538422-59538731(-)$1	309	72	83	23.6122
^^^^^^^^^^^	chr21:39439646-39439934(-)$1	288	136	147	16.9795
}EEEEE/////	chr21:20001349-20001642(-)$1	293	179	190	14.9387
ffffddddddd	chr14:37485871-37486188(-)$1	317	91	102	14.6326
KKIIIIIIIII	chr22:48169758-48170019(+)$1	261	10	21	15.3469
:::::::dddd	chr8:91384489-91384784(+)$1	295	16	27	16.6734
oooobb:::FF	chr2:152320574-152320853(+)$1	279	177	188	16.3673
:::::::DDDD	chr7:140526570-140526798(-)$1	228	24	35	14.6326
++++++++eee	chr13:92997931-92998206(+)$1	275	165	176	15.1428
dqqqqqqqqdd	chr15:40914727-40914956(+)$1	229	172	183	14.1224
c::::::::::	chr7:76219375-76219635(+)$1	260	133	144	20.8571
==========r	chr1:203769420-203769659(+)$1	239	150	161	16.1632

#DB
(........((	chr8:93852025-93852313(-)$1	1	141	152	15.9591
...........	chr6:69474183-69474500(+)$1	1	52	63	15.6530
.((((..((((	chr6:167407935-167408221(-)$1	1	38	49	14.6326
((((.......	chr4:13605102-13605350(-)$1	1	138	149	16.3673
........(((	chr2:109087823-109088099(+)$1	1	61	72	17.0816
........(((	chr1:51350846-51351155(-)$1	1	1	12	15.0408
...........	chr1:245920256-245920576(-)$1	1	309	320	17.0816
..........(	chr18:2734615-2734860(+)$1	1	83	94	15.2448
........)))	chr8:91393831-91394151(+)$1	1	107	118	23.6122
(((.......)	chr5:43137446-43137687(+)$1	1	139	150	18.3061
)))))).....	chr5:104709787-104710072(-)$1	1	20	31	16.1632
......)))))	chr10:74272809-74273077(-)$1	1	88	99	16.0612
........(((	chr19:45365795-45366126(+)$1	1	51	62	14.9387
.........((	chr8:91385033-91385321(+)$1	1	29	40	23.6122
(.........(	chr2:168741465-168741700(-)$1	1	57	68	15.8571
...........	chr4:2330477-2330763(-)$1	1	223	234	23.6122
.........((	chr7:76223978-76224244(+)$1	1	34	45	20.3469
........(((	chr9:125960960-125961241(-)$1	1	0	11	17.6938
...........	chr6:147703143-147703461(+)$1	1	38	49	17.8979
...........	chr7:140527474-140527721(-)$1	1	8	19	19.4285
.((((......	chr17:5470872-5471169(-)$1	1	51	62	17.5918
...........	chr21:19967128-19967416(-)$1	1	271	282	16.7755
...........	chr19:28977392-28977649(-)$1	1	0	11	16.1632
...........	chr1:245921592-245921871(-)$1	1	141	152	20.0408
........)))	chr4:87911241-87911539(+)$1	1	241	252	23.6122
...........	chr6:10940542-10940784(+)$1	1	189	200	17.4897
..)))....))	chr21:39471606-39471896(-)$1	1	27	38	23.6122
...........	chr2:209528424-209528707(+)$1	1	70	81	20.2448
...........	chr6:69554776-69555067(+)$1	1	133	144	19.1224
...........	chr16:74353100-74353442(-)$1	1	13	24	17.5918
.........))	chr11:75740659-75740954(+)$1	1	79	90	14.9387
...........	chr16:89030987-89031272(-)$1	1	148	159	15.2448
)))))))))))	chr8:74640527-74640799(-)$1	1	172	183	16.3673
)..........	chr6:147621847-147622103(+)$1	1	244	255	19.3265
....(((((.(	chr1:51097950-51098263(-)$1	1	92	103	14.8367
(........))	chr15:40914895-40915219(+)$1	1	4	15	14.1224
.........((	chr20:1120511-1120794(+)$1	1	1	12	16.6734
...........	chr8:59538422-59538731(-)$1	1	72	83	23.6122
...........	chr21:39439646-39439934(-)$1	1	136	147	16.9795
.))))).....	chr21:20001349-20001642(-)$1	1	179	190	14.9387
)))))))))))	chr14:37485871-37486188(-)$1	1	91	102	14.6326
..(((((((((	chr22:48169758-48170019(+)$1	1	10	21	15.3469
.......((((	chr8:91384489-91384784(+)$1	1	16	27	16.6734
....))...))	chr2:152320574-152320853(+)$1	1	177	188	16.3673
.......((((	chr7:140526570-140526798(-)$1	1	24	35	14.6326
........(((	chr13:92997931-92998206(+)$1	1	165	176	15.1428
(........))	chr15:40914727-40914956(+)$1	1	172	183	14.1224
)..........	chr7:76219375-76219635(+)$1	1	133	144	20.8571
((((((((((.	chr1:203769420-203769659(+)$1	1	150	161	16.1632

#PSSM
a : 0.53	A : 0.22	c : 0.08	u : 0.04	g : 0.04	G : 0.04	U : 0.04	
a : 0.48	A : 0.20	g : 0.08	c : 0.08	G : 0.06	u : 0.04	U : 0.02	C : 0.02	
a : 0.65	A : 0.24	G : 0.04	c : 0.02	C : 0.02	g : 0.02	
a : 0.53	A : 0.26	g : 0.08	u : 0.06	U : 0.04	c : 0.02	
a : 0.65	A : 0.26	g : 0.04	G : 0.02	C : 0.02	
a : 0.51	A : 0.24	u : 0.08	g : 0.06	G : 0.04	c : 0.04	U : 0.02	
a : 0.57	A : 0.32	g : 0.10	
a : 0.63	A : 0.30	C : 0.02	u : 0.02	U : 0.02	
a : 0.65	A : 0.32	U : 0.02	
g : 0.59	G : 0.30	a : 0.04	u : 0.04	U : 0.02	
a : 0.42	A : 0.16	u : 0.14	g : 0.10	U : 0.06	G : 0.06	C : 0.04	

#score	857.8163265306126
#seq	49
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_CDS_m3_run1.nuc.txt

#NT
GAAGAGGGCAGCUCCCAUGACUGCCUGACCGCCUUCUCUCCUCCCCCAGGUCCACCUCCACCUCCUCACCCGUUCGCCCGGCUGCCACAUUCCCACCUGCCACCCACUGCCCACUGGGCGGCACCCUCGAUGGGGUCUACCCUACCCUCAUGGAGCCCGUCUUGCUGCCCAAGGAGGCCCCCCGGGUCGCCCGGCCAGAGCGGCCCCGAGCAGACACCGGCCAUGCCUUCCUCGCCAAGCCCCCAGCCCGCUCCGGGCUGGAGCCCGCCUCCUCCCCCAGCAAGGGCUCGGAGCCCCGGCCCCUAGUGCCUCCUGUCUCUGGCCACGCCACCAUCGCCCGCACCC	chr12:124821429-124821826(-)$1	397	51	396	447.5000

#otherMatches

#Struct PSSM
EEEEE:dddduuuuuuuuuuuudddd:::::::::::::::::::cccddddllldddd]ccc:FFFFFFTTTTTTTTTTTEEEEE:::ffffffmmmmffffff:::::::::BB{DDDD{A{CCCKKJJJJJJJJJJKKCCCcccooooooccc:::::::::::::hhhhhhhh$$$$$bblllbb4444hhhhhhhh::::::::::::CCCYYJJJJJJJJJJYYCCC}AZZZDDDDBBZZZEEEEEFFFFFF::dddd[dddd"""eeeeeeeeee[bb[ccc!!apppppppa22ccc]bb4444eeeee22eeeee333dddd]dddd:::::::EE	chr12:57008969-57009326(-)$1	357	2	347	447.5000
H::::ffffffaooooooa]ffffffdddd^^^^^^^^^^^^^^^^^^dddd::HHHHHHHHEEEEE}FFFFFF}DDDDBBZZZJJJJJJJJJJ:::dddd[ddddqqqqqqqqdddd]dddd:::::ffffff[ddddtttttttttttdddd]ffffffFFFFFFMMMMGGGGGGG:::ddddcccbba[ddddnnnnndddd22a]bb]ccc]dddd::::bbpppppppbb:::bb!!hhhhhhhhlllhhhhhhhh]bb::GGGGGGG~~~~FFFFFFdddd[cccmmmmcccdddd:::dddd####bb####ddddllldddd4444bb333dddd::	chr12:124821429-124821826(-)$1	397	51	396	447.5000

#DB
(((((.((((............))))...................(((((((...)))).))).((((((...........(((((...((((((....)))))).........((.((((.(.(((..((((((((((..((((((......))).............((((((((.....((...))....))))))))............)))..))))))))))..))).)...))))))...)))))))))))..((((.((((...((((((((((.((.(((..(.......)..))).))....)))))..)))))...)))).)))).......))	chr12:57008969-57009326(-)$1	1	2	347	447.5000
(....(((((((......).))))))((((..................))))..))))))))))))).)))))).))))))...))))))))))...((((.((((........)))).)))).....((((((.((((...........)))).))))))((((((....(((((((...((((((((((.((((.....))))..).)).))).))))....((.......))...((..((((((((...)))))))).))..)))))))....))))))((((.(((....)))))))...((((....((....((((...))))....))...))))..	chr12:124821429-124821826(-)$1	1	51	396	447.5000

#PSSM
G : 1.00	
A : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	

#score	895.0
#seq	2
#width	345
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_UTR_m1_run2.nuc.txt

#NT
CCUGG	chr11:129998849-129999184(+)$1	335	164	169	15.0000
CCUGG	chr11:122929576-122929785(-)$1	209	1	6	15.0000
CCUGG	chr9:124064138-124064454(+)$1	316	42	47	15.0000
CCUGG	chr17:76968531-76968770(-)$1	239	134	139	15.0000
CCUGG	chr19:18530124-18530433(+)$1	309	221	226	15.0000
CCUGG	chr17:76968340-76968610(-)$1	270	40	45	15.0000
CCUGG	chr9:116822408-116822633(-)$1	225	188	193	15.0000
CCUGG	chr9:116997791-116998033(+)$1	242	195	200	15.0000
CCUGG	chr4:74279220-74279430(+)$1	210	122	127	15.0000
CCUGG	chr19:50001073-50001288(+)$1	215	38	43	15.0000
CCUGG	chr17:76969079-76969316(-)$1	237	31	36	15.0000
CCUGG	chr1:44010608-44010859(+)$1	251	102	107	15.0000
CCUGG	chr17:27047498-27047734(+)$1	236	28	33	15.0000
CCUGG	chr19:580303-580559(+)$1	256	2	7	15.0000
CCUGG	chr20:60889766-60889977(-)$1	211	23	28	15.0000
CCUGG	chr19:45321679-45321912(+)$1	233	34	39	15.0000
CCUGG	chr9:117044636-117044845(+)$1	209	44	49	15.0000
CCUGG	chr2:42557267-42557536(+)$1	269	83	88	15.0000
CCUGG	chr2:216226623-216226866(-)$1	243	91	96	15.0000
CCUGG	chr14:31676489-31676805(-)$1	316	148	153	15.0000
CCUGG	chr3:48457714-48457970(-)$1	256	77	82	15.0000
CCUGG	chr19:18530285-18530584(+)$1	299	60	65	15.0000
CCUGG	chr1:43996598-43996862(+)$1	264	151	156	15.0000
CCUGG	chr8:11702487-11702737(-)$1	250	129	134	15.0000
CCUGG	chr3:50112604-50112863(+)$1	259	119	124	15.0000
CCUGG	chr11:64536382-64536664(-)$1	282	74	79	15.0000
CCUGG	chr17:79813228-79813476(-)$1	248	239	244	15.0000
CCUGG	chr21:27542859-27543177(-)$1	318	54	59	15.0000
CCUGG	chr17:1675077-1675358(+)$1	281	15	20	15.0000
CCUGG	chr7:75615593-75615847(+)$1	254	187	192	15.0000
CCUGG	chr22:42229146-42229420(+)$1	274	199	204	15.0000
CCUGG	chr3:133494209-133494540(+)$1	331	170	175	15.0000
CCUGG	chr12:9245961-9246179(-)$1	218	35	40	15.0000
CCUGG	chr12:862122-862386(+)$1	264	140	145	15.0000
CCUGG	chr2:20251102-20251447(-)$1	345	258	263	15.0000
CCUGG	chr11:68192529-68192774(+)$1	245	94	99	15.0000
CCUGG	chr13:98995922-98996220(+)$1	298	102	107	15.0000
CCUGG	chr17:48797010-48797278(+)$1	268	46	51	15.0000
CCUGG	chr9:117027600-117027849(+)$1	249	199	204	15.0000
CCUGG	chr2:159498908-159499315(+)$1	407	62	67	15.0000
CCUGG	chr2:216300426-216300643(-)$1	217	165	170	15.0000
CCUGG	chr2:61575321-61575625(-)$1	304	70	75	15.0000
CCUGG	chr10:79800292-79800543(+)$1	251	196	201	15.0000
CCUGG	chrX:132670023-132670249(-)$1	226	85	90	15.0000
CCUGG	chr3:186338671-186338921(+)$1	250	109	114	15.0000
CCUGG	chr3:133476588-133476830(+)$1	242	152	157	15.0000
CCUGG	chr21:46914709-46914929(+)$1	220	44	49	15.0000
CCUGG	chr3:133472346-133472576(+)$1	230	4	9	15.0000
CCUGG	chr16:9185408-9185740(+)$1	332	283	288	15.0000
CCUGG	chr7:75609554-75609784(+)$1	230	8	13	15.0000
CCUGG	chr9:117005699-117005929(+)$1	230	25	30	15.0000
CCUGG	chr16:22308641-22308954(+)$1	313	279	284	15.0000
CCUGG	chr13:99037807-99038170(+)$1	363	80	85	15.0000
CCUGG	chr19:572529-572799(+)$1	270	255	260	15.0000
CCUGG	chr3:133472377-133472635(+)$1	258	114	119	15.0000
CCUGG	chr11:122929515-122929776(-)$1	261	197	202	15.0000
CCUGG	chr8:134256497-134256734(-)$1	237	181	186	15.0000
CCUGG	chr6:167369484-167369724(-)$1	240	98	103	15.0000
CCUGG	chr9:117005729-117005940(+)$1	211	63	68	15.0000

#otherMatches

#Struct PSSM
:::bb	chr14:24606807-24607056(+)$1	249	195	200	15.0000
ee]cc	chr11:129998849-129999184(+)$1	335	164	169	15.0000
:FFFF	chr11:122929576-122929785(-)$1	209	1	6	15.0000
qqqcc	chr9:124064138-124064454(+)$1	316	42	47	15.0000
"""cc	chr17:76968531-76968770(-)$1	239	134	139	15.0000
cclll	chr19:18530124-18530433(+)$1	309	221	226	15.0000
GGGee	chr17:76968340-76968610(-)$1	270	40	45	15.0000
FFFFF	chr9:116822408-116822633(-)$1	225	188	193	15.0000
IIIII	chr9:116997791-116998033(+)$1	242	195	200	15.0000
iiicc	chr4:74279220-74279430(+)$1	210	122	127	15.0000
KBBdd	chr19:50001073-50001288(+)$1	215	38	43	15.0000
A{CCC	chr17:76969079-76969316(-)$1	237	31	36	15.0000
dd[ee	chr1:44010608-44010859(+)$1	251	102	107	15.0000
:::FF	chr17:27047498-27047734(+)$1	236	28	33	15.0000
:DDDD	chr19:580303-580559(+)$1	256	2	7	15.0000
gggbb	chr20:60889766-60889977(-)$1	211	23	28	15.0000
'''''	chr19:45321679-45321912(+)$1	233	34	39	15.0000
DDDBB	chr9:117044636-117044845(+)$1	209	44	49	15.0000
eeeee	chr2:42557267-42557536(+)$1	269	83	88	15.0000
c[ddd	chr2:216226623-216226866(-)$1	243	91	96	15.0000
b:::f	chr14:31676489-31676805(-)$1	316	148	153	15.0000
hhhhh	chr3:48457714-48457970(-)$1	256	77	82	15.0000
cclll	chr19:18530285-18530584(+)$1	299	60	65	15.0000
cccmm	chr1:43996598-43996862(+)$1	264	151	156	15.0000
ggggg	chr8:11702487-11702737(-)$1	250	129	134	15.0000
eeee=	chr3:50112604-50112863(+)$1	259	119	124	15.0000
::HHH	chr11:64536382-64536664(-)$1	282	74	79	15.0000
DD}CC	chr17:79813228-79813476(-)$1	248	239	244	15.0000
ggg]d	chr21:27542859-27543177(-)$1	318	54	59	15.0000
:::gg	chr17:1675077-1675358(+)$1	281	15	20	15.0000
dddcc	chr7:75615593-75615847(+)$1	254	187	192	15.0000
b]ddd	chr22:42229146-42229420(+)$1	274	199	204	15.0000
mmmcc	chr3:133494209-133494540(+)$1	331	170	175	15.0000
nnnng	chr12:9245961-9246179(-)$1	218	35	40	15.0000
!!ddd	chr12:862122-862386(+)$1	264	140	145	15.0000
ddd[c	chr2:20251102-20251447(-)$1	345	258	263	15.0000
dd:gg	chr11:68192529-68192774(+)$1	245	94	99	15.0000
cccmm	chr13:98995922-98996220(+)$1	298	102	107	15.0000
IIIII	chr17:48797010-48797278(+)$1	268	46	51	15.0000
bbrrr	chr9:117027600-117027849(+)$1	249	199	204	15.0000
DKKDD	chr2:159498908-159499315(+)$1	407	62	67	15.0000
cc333	chr2:216300426-216300643(-)$1	217	165	170	15.0000
Bcccm	chr2:61575321-61575625(-)$1	304	70	75	15.0000
fffff	chr10:79800292-79800543(+)$1	251	196	201	15.0000
:dddd	chrX:132670023-132670249(-)$1	226	85	90	15.0000
mmfff	chr3:186338671-186338921(+)$1	250	109	114	15.0000
BB{BB	chr3:133476588-133476830(+)$1	242	152	157	15.0000
CC{FF	chr21:46914709-46914929(+)$1	220	44	49	15.0000
HHHHH	chr3:133472346-133472576(+)$1	230	4	9	15.0000
ggggg	chr16:9185408-9185740(+)$1	332	283	288	15.0000
HHHHH	chr7:75609554-75609784(+)$1	230	8	13	15.0000
d!!cc	chr9:117005699-117005929(+)$1	230	25	30	15.0000
cccbb	chr16:22308641-22308954(+)$1	313	279	284	15.0000
hhhhh	chr13:99037807-99038170(+)$1	363	80	85	15.0000
bccc]	chr19:572529-572799(+)$1	270	255	260	15.0000
HHHCC	chr3:133472377-133472635(+)$1	258	114	119	15.0000
2dddd	chr11:122929515-122929776(-)$1	261	197	202	15.0000
fffff	chr8:134256497-134256734(-)$1	237	181	186	15.0000
fffdd	chr6:167369484-167369724(-)$1	240	98	103	15.0000
ddddd	chr9:117005729-117005940(+)$1	211	63	68	15.0000

#DB
...((	chr14:24606807-24607056(+)$1	1	195	200	15.0000
)).))	chr11:129998849-129999184(+)$1	1	164	169	15.0000
.((((	chr11:122929576-122929785(-)$1	1	1	6	15.0000
...))	chr9:124064138-124064454(+)$1	1	42	47	15.0000
...((	chr17:76968531-76968770(-)$1	1	134	139	15.0000
((...	chr19:18530124-18530433(+)$1	1	221	226	15.0000
(((((	chr17:76968340-76968610(-)$1	1	40	45	15.0000
)))))	chr9:116822408-116822633(-)$1	1	188	193	15.0000
)))))	chr9:116997791-116998033(+)$1	1	195	200	15.0000
(((((	chr4:74279220-74279430(+)$1	1	122	127	15.0000
.((((	chr19:50001073-50001288(+)$1	1	38	43	15.0000
(.(((	chr17:76969079-76969316(-)$1	1	31	36	15.0000
((.((	chr1:44010608-44010859(+)$1	1	102	107	15.0000
...((	chr17:27047498-27047734(+)$1	1	28	33	15.0000
.((((	chr19:580303-580559(+)$1	1	2	7	15.0000
(((((	chr20:60889766-60889977(-)$1	1	23	28	15.0000
.....	chr19:45321679-45321912(+)$1	1	34	39	15.0000
(((((	chr9:117044636-117044845(+)$1	1	44	49	15.0000
(((((	chr2:42557267-42557536(+)$1	1	83	88	15.0000
(.(((	chr2:216226623-216226866(-)$1	1	91	96	15.0000
)...(	chr14:31676489-31676805(-)$1	1	148	153	15.0000
)))))	chr3:48457714-48457970(-)$1	1	77	82	15.0000
((...	chr19:18530285-18530584(+)$1	1	60	65	15.0000
(((..	chr1:43996598-43996862(+)$1	1	151	156	15.0000
)))))	chr8:11702487-11702737(-)$1	1	129	134	15.0000
)))))	chr3:50112604-50112863(+)$1	1	119	124	15.0000
..(((	chr11:64536382-64536664(-)$1	1	74	79	15.0000
)).))	chr17:79813228-79813476(-)$1	1	239	244	15.0000
))).)	chr21:27542859-27543177(-)$1	1	54	59	15.0000
...((	chr17:1675077-1675358(+)$1	1	15	20	15.0000
)))((	chr7:75615593-75615847(+)$1	1	187	192	15.0000
).)))	chr22:42229146-42229420(+)$1	1	199	204	15.0000
...))	chr3:133494209-133494540(+)$1	1	170	175	15.0000
....)	chr12:9245961-9246179(-)$1	1	35	40	15.0000
..(((	chr12:862122-862386(+)$1	1	140	145	15.0000
(((.(	chr2:20251102-20251447(-)$1	1	258	263	15.0000
)).((	chr11:68192529-68192774(+)$1	1	94	99	15.0000
(((..	chr13:98995922-98996220(+)$1	1	102	107	15.0000
(((((	chr17:48797010-48797278(+)$1	1	46	51	15.0000
((...	chr9:117027600-117027849(+)$1	1	199	204	15.0000
(..((	chr2:159498908-159499315(+)$1	1	62	67	15.0000
))...	chr2:216300426-216300643(-)$1	1	165	170	15.0000
((((.	chr2:61575321-61575625(-)$1	1	70	75	15.0000
(((((	chr10:79800292-79800543(+)$1	1	196	201	15.0000
.((((	chrX:132670023-132670249(-)$1	1	85	90	15.0000
..)))	chr3:186338671-186338921(+)$1	1	109	114	15.0000
((.((	chr3:133476588-133476830(+)$1	1	152	157	15.0000
((.((	chr21:46914709-46914929(+)$1	1	44	49	15.0000
(((((	chr3:133472346-133472576(+)$1	1	4	9	15.0000
)))))	chr16:9185408-9185740(+)$1	1	283	288	15.0000
(((((	chr7:75609554-75609784(+)$1	1	8	13	15.0000
(..((	chr9:117005699-117005929(+)$1	1	25	30	15.0000
(((((	chr16:22308641-22308954(+)$1	1	279	284	15.0000
)))))	chr13:99037807-99038170(+)$1	1	80	85	15.0000
)))).	chr19:572529-572799(+)$1	1	255	260	15.0000
)))))	chr3:133472377-133472635(+)$1	1	114	119	15.0000
.))))	chr11:122929515-122929776(-)$1	1	197	202	15.0000
)))))	chr8:134256497-134256734(-)$1	1	181	186	15.0000
(((((	chr6:167369484-167369724(-)$1	1	98	103	15.0000
)))))	chr9:117005729-117005940(+)$1	1	63	68	15.0000

#PSSM
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	

#score	900.0000000000005
#seq	60
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_CDS_m1_run2.nuc.txt

#NT
UGUGAGCUUUAUCACAAUCUGUUUUUUGGAAGCUUUUCAAAUAUGUGAUGAUUUUCCUCUUCAGAAAAAGAUGUUAACAGAACAGAUCGAACAAACAAGUUUUAUGAAGGCCAAGAUAAUCCAGGGUUGAUUUUACUUCAUGACAUUUUGAUGACCUACUGUAUGUAUGAUUUUGAUUUAGGUAAGUUCUCUAAAGUUCUAAUUUUAAAAGAUGUAAAUAUAUUUACUUUAGAGUUUACAUUUUUAAUCCAGUUAGACAUGGGUAAU	chr12:72300699-72301004(+)$1	305	38	305	378.5000

#otherMatches

#Struct PSSM
:::::GGGGGGGOOOOOODDDD{EEEEE{CCC{GGGGGGGKKBB{DDDDEEEEE::::hhhhhhhhccc[ddddoooooodddd]ccc333hhhhhhhh::::::::::bb!!ccc!!ccc[bb[cccmmmmccc]bb]ccc22ccc22bbffffffqqqqqqqqffffff::iiiiiiiiinnnnniiiiiiiii::::::EEEEE}DDDDBBYYGGGGGGG}CCC}EEEEEDDDD______GGGGGGG:::::::::::::::::	chr1:244579182-244579450(-)$1	268	1	268	378.5000
FKKHHHHHHHH:::::IIIIIIIII::eeeee[bb[cccooooooccc]bb]eeeeeddddoooooodddd:::::::IIIIIIIII:::::::::dddd[hhhhhhhh"""ccc[eeeeellleeeee]ccc22hhhhhhhh]dddd:bb[ccc[dddd$$$$$bboooooobb55555dddd]ccc]bbHHHHHHHHYYFFFFFF}CCC::eeeeemmmmeeeee::FFFFFFZZZGGGGGGG:eeeeeqqqqqqqqeeeee:::	chr12:72300699-72301004(+)$1	305	38	305	378.5000

#DB
.....(((((((......((((.(((((.(((.(((((((..((.(((((((((....(((((((((((.((((......)))).)))...))))))))..........((..(((..(((.((.(((....))).)).)))..)))..))((((((........))))))..(((((((((.....)))))))))......))))).))))))..))))))).))).)))))))))......))))))).................	chr1:244579182-244579450(-)$1	1	1	268	378.5000
(..((((((((.....(((((((((..(((((.((.(((......))).)).)))))((((......)))).......))))))))).........((((.((((((((...(((.(((((...))))).)))..)))))))).)))).((.(((.((((.....((......)).....)))).))).))))))))))..)))))).)))..(((((....)))))..))))))...))))))).(((((........)))))...	chr12:72300699-72301004(+)$1	1	38	305	378.5000

#PSSM
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	

#score	757.0
#seq	2
#width	267
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_UTR_m1_run2.nuc.txt

#NT
GAUGGUG	chr8:110346553-110346808(+)$1	255	143	150	13.3076
GUUGCUG	chr17:76200657-76200965(+)$1	308	177	184	12.7307
CUUGGUG	chr17:61909382-61909669(-)$1	287	144	151	12.7307
GAUGGUG	chr8:110346528-110346753(+)$1	225	168	175	13.3076
GUUGCUG	chr3:41281088-41281351(+)$1	263	100	107	12.7307
GUUGGUU	chr6:26285603-26285848(-)$1	245	97	104	13.1153
GUUGGUA	chr1:1327778-1328069(-)$1	291	112	119	12.7307
GUUGGUG	chr17:25635435-25635708(+)$1	273	200	207	16.5769
GUUGGUG	chr18:43669718-43670001(-)$1	283	69	76	16.5769
GUUGGUG	chr17:25635567-25635798(+)$1	231	68	75	16.5769
GUAGGUG	chr17:46051772-46052129(+)$1	357	170	177	11.9615
GUUGGGG	chr7:5569352-5569622(-)$1	270	123	130	12.7307
GUUGGUU	chr15:69071858-69072105(-)$1	247	49	56	13.1153
GAUGGUG	chr8:110346478-110346728(+)$1	250	218	225	13.3076
UUUGGUG	chr2:17934125-17934390(-)$1	265	176	183	12.5384
GCUGGUG	chr16:10479850-10480144(+)$1	294	108	115	13.1153
GCUGGUG	chr19:49606309-49606566(+)$1	257	24	31	13.1153
GUUGGGG	chr19:2270118-2270390(+)$1	272	103	110	12.7307
GUUGGUC	chr19:49607697-49608001(+)$1	304	38	45	12.7307
AUUGGUG	chr18:43671546-43671779(-)$1	233	51	58	12.5384
gguggug	chr16:31201578-31201815(+)$1	237	43	50	12.9230
GUUGGGG	chr16:29822015-29822253(+)$1	238	106	113	12.7307
GUUGCUG	chr11:122932366-122932611(-)$1	245	103	110	12.7307
GUUGGUU	chr15:69071905-69072177(-)$1	272	121	128	13.1153
CUUGGUG	chr17:61909469-61909689(-)$1	220	164	171	12.7307

#otherMatches

#Struct PSSM
MEEEEE{	chr17:56082236-56082587(-)$1	351	93	100	11.9615
!eeeeen	chr8:110346553-110346808(+)$1	255	143	150	13.3076
ee:dddd	chr17:76200657-76200965(+)$1	308	177	184	12.7307
eeee[ao	chr17:61909382-61909669(-)$1	287	144	151	12.7307
iiiii]e	chr8:110346528-110346753(+)$1	225	168	175	13.3076
eeee22g	chr3:41281088-41281351(+)$1	263	100	107	12.7307
+++++++	chr6:26285603-26285848(-)$1	245	97	104	13.1153
HHHHHH:	chr1:1327778-1328069(-)$1	291	112	119	12.7307
"""cccp	chr17:25635435-25635708(+)$1	273	200	207	16.5769
ffffff[	chr18:43669718-43670001(-)$1	283	69	76	16.5769
$$cccmm	chr17:25635567-25635798(+)$1	231	68	75	16.5769
"""bb[b	chr17:46051772-46052129(+)$1	357	170	177	11.9615
gggggg#	chr7:5569352-5569622(-)$1	270	123	130	12.7307
f::::::	chr15:69071858-69072105(-)$1	247	49	56	13.1153
iiiii]e	chr8:110346478-110346728(+)$1	250	218	225	13.3076
d22eeee	chr2:17934125-17934390(-)$1	265	176	183	12.5384
HHHHHH:	chr16:10479850-10480144(+)$1	294	108	115	13.1153
d55555c	chr19:49606309-49606566(+)$1	257	24	31	13.1153
[ccc"""	chr19:2270118-2270390(+)$1	272	103	110	12.7307
[bb!!cc	chr19:49607697-49608001(+)$1	304	38	45	12.7307
dd[ffff	chr18:43671546-43671779(-)$1	233	51	58	12.5384
!bbmmmm	chr16:31201578-31201815(+)$1	237	43	50	12.9230
666666c	chr16:29822015-29822253(+)$1	238	106	113	12.7307
$$$dddd	chr11:122932366-122932611(-)$1	245	103	110	12.7307
f::::::	chr15:69071905-69072177(-)$1	272	121	128	13.1153
BB}BB}B	chr17:61909469-61909689(-)$1	220	164	171	12.7307

#DB
.(((((.	chr17:56082236-56082587(-)$1	1	93	100	11.9615
.(((((.	chr8:110346553-110346808(+)$1	1	143	150	13.3076
)).((((	chr17:76200657-76200965(+)$1	1	177	184	12.7307
((((.(.	chr17:61909382-61909669(-)$1	1	144	151	12.7307
))))).)	chr8:110346528-110346753(+)$1	1	168	175	13.3076
))))..)	chr3:41281088-41281351(+)$1	1	100	107	12.7307
.......	chr6:26285603-26285848(-)$1	1	97	104	13.1153
)))))).	chr1:1327778-1328069(-)$1	1	112	119	12.7307
...(((.	chr17:25635435-25635708(+)$1	1	200	207	16.5769
((((((.	chr18:43669718-43670001(-)$1	1	69	76	16.5769
..(((..	chr17:25635567-25635798(+)$1	1	68	75	16.5769
...((.(	chr17:46051772-46052129(+)$1	1	170	177	11.9615
((((((.	chr7:5569352-5569622(-)$1	1	123	130	12.7307
)......	chr15:69071858-69072105(-)$1	1	49	56	13.1153
))))).)	chr8:110346478-110346728(+)$1	1	218	225	13.3076
)..))))	chr2:17934125-17934390(-)$1	1	176	183	12.5384
)))))).	chr16:10479850-10480144(+)$1	1	108	115	13.1153
).....)	chr19:49606309-49606566(+)$1	1	24	31	13.1153
.(((...	chr19:2270118-2270390(+)$1	1	103	110	12.7307
.((..((	chr19:49607697-49608001(+)$1	1	38	45	12.7307
((.((((	chr18:43671546-43671779(-)$1	1	51	58	12.5384
.((....	chr16:31201578-31201815(+)$1	1	43	50	12.9230
......)	chr16:29822015-29822253(+)$1	1	106	113	12.7307
...((((	chr11:122932366-122932611(-)$1	1	103	110	12.7307
)......	chr15:69071905-69072177(-)$1	1	121	128	13.1153
)).)).)	chr17:61909469-61909689(-)$1	1	164	171	12.7307

#PSSM
G : 0.80	C : 0.07	U : 0.03	A : 0.03	g : 0.03	
U : 0.76	A : 0.11	C : 0.07	g : 0.03	
U : 0.92	A : 0.03	u : 0.03	
G : 0.92	U : 0.03	g : 0.03	
G : 0.84	C : 0.11	g : 0.03	
U : 0.84	G : 0.11	u : 0.03	
G : 0.76	U : 0.11	A : 0.03	C : 0.03	g : 0.03	

#score	344.4615384615383
#seq	26
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_CDS_m1_run2.nuc.txt

#NT
CCUG	chr20:44978891-44979167(-)$1	276	50	54	11.9999
ccug	chr3:184107068-184107369(+)$1	301	12	16	11.9999
CCUG	chr16:2225955-2226215(+)$1	260	5	9	11.9999
CCUG	chr11:62370238-62370537(-)$1	299	19	23	11.9999
CCUG	chrX:70777294-70777540(+)$1	246	1	5	11.9999
CCUG	chr9:117062251-117062477(+)$1	226	22	26	11.9999
CCUG	chr1:234742822-234743035(-)$1	213	76	80	11.9999
CCUG	chr3:52842469-52842705(+)$1	236	218	222	11.9999
CCUG	chr3:52842539-52842787(+)$1	248	148	152	11.9999
CCUG	chr7:930549-930790(+)$1	241	232	236	11.9999
CCUG	chr2:220074016-220074294(+)$1	278	2	6	11.9999
CCUG	chr1:46035510-46035746(+)$1	236	15	19	11.9999
CCUG	chr3:184101256-184101521(+)$1	265	42	46	11.9999
CCUG	chr16:67917856-67918117(+)$1	261	5	9	11.9999
CCUG	chr9:14737405-14737692(-)$1	287	149	153	11.9999
CCUG	chr3:184103819-184104045(+)$1	226	34	38	11.9999
CCUG	chr17:80016415-80016696(-)$1	281	206	210	11.9999
CCUG	chr14:103576588-103576837(+)$1	249	59	63	11.9999
CCUG	chr3:184104216-184104470(+)$1	254	101	105	11.9999
CCUG	chr4:110662023-110662280(-)$1	257	38	42	11.9999
CCUG	chr16:31202619-31202847(+)$1	228	144	148	11.9999
CCUG	chr3:184106642-184106884(+)$1	242	84	88	11.9999
CCUG	chr20:61468389-61468593(+)$1	204	22	26	11.9999
CCUG	chr1:153617564-153617821(+)$1	257	58	62	11.9999
CCUG	chr19:45882858-45883166(-)$1	308	43	47	11.9999
CCUG	chr16:723779-724039(+)$1	260	5	9	11.9999
CCUG	chr5:167945994-167946272(+)$1	278	170	174	11.9999
CCUG	chr19:18499630-18499894(+)$1	264	2	6	11.9999
CCUG	chr3:52842102-52842306(+)$1	204	161	165	11.9999
CCUG	chr9:117063626-117063842(+)$1	216	77	81	11.9999
CCUG	chr12:56119526-56119783(-)$1	257	89	93	11.9999
CCUG	chr3:52842134-52842337(+)$1	203	129	133	11.9999
CCUG	chr6:31498456-31498667(-)$1	211	84	88	11.9999
CCUG	chr1:19404368-19404616(-)$1	248	204	208	11.9999
CCUG	chr3:184104301-184104559(+)$1	258	16	20	11.9999
CCUG	chr3:132279844-132280087(-)$1	243	200	204	11.9999
CCUG	chr17:80400252-80400523(+)$1	271	3	7	11.9999
CCUG	chrX:48682236-48682524(+)$1	288	123	127	11.9999
CCUG	chr20:61468470-61468716(+)$1	246	44	48	11.9999
CCUG	chr12:30862661-30862939(-)$1	278	248	252	11.9999
CCUG	chr20:61467728-61467955(+)$1	227	199	203	11.9999
CCUG	chr6:5109453-5109799(-)$1	346	45	49	11.9999
CCUG	chr14:24612503-24612731(-)$1	228	3	7	11.9999
CCUG	chr9:19380088-19380331(-)$1	243	74	78	11.9999
CCUG	chr16:89265274-89265532(-)$1	258	6	10	11.9999
CCUG	chr1:43220552-43220823(-)$1	271	45	49	11.9999
CCUG	chr1:19403242-19403498(-)$1	256	28	32	11.9999
CCUG	chr1:155290210-155290483(+)$1	273	132	136	11.9999
CCUG	chr3:184106580-184106842(+)$1	262	27	31	11.9999
CCUG	chr16:31202266-31202521(+)$1	255	145	149	11.9999
CCUG	chr3:53898716-53898934(+)$1	218	8	12	11.9999
CCUG	chr17:74383271-74383530(+)$1	259	20	24	11.9999
CCUG	chr20:34129986-34130230(+)$1	244	8	12	11.9999
CCUG	chr3:49721395-49721652(-)$1	257	22	26	11.9999
CCUG	chr20:33867346-33867605(-)$1	259	129	133	11.9999
ccug	chr9:117063464-117063685(+)$1	221	69	73	11.9999
CCUG	chr3:49721453-49721706(-)$1	253	76	80	11.9999
CCUG	chr17:1680614-1680849(+)$1	235	3	7	11.9999
CCUG	chr19:36290819-36291066(-)$1	247	6	10	11.9999
CCUG	chr17:40268952-40269190(-)$1	238	181	185	11.9999
CCUG	chr5:179264352-179264634(-)$1	282	140	144	11.9999
CCUG	chr7:151947837-151948071(-)$1	234	49	53	11.9999
CCUG	chr16:74908012-74908256(-)$1	244	38	42	11.9999
CCUG	chrX:18911469-18911743(-)$1	274	148	152	11.9999
CCUG	chr14:103576679-103576946(+)$1	267	253	257	11.9999
CCUG	chr17:78093022-78093320(+)$1	298	50	54	11.9999
CCUG	chrM:15740-15971(+)$1	231	13	17	11.9999
CCUG	chr22:36661961-36662196(+)$1	235	151	155	11.9999
CCUG	chr2:42990349-42990583(-)$1	234	34	38	11.9999
CCUG	chr5:74016886-74017188(+)$1	302	259	263	11.9999
CCUG	chr16:31202321-31202532(+)$1	211	90	94	11.9999
CCUG	chr14:39819238-39819544(+)$1	306	113	117	11.9999
CCUG	chr17:1680558-1680798(+)$1	240	59	63	11.9999
CCUG	chr9:117069913-117070157(+)$1	244	28	32	11.9999
CCUG	chr8:145693802-145694079(+)$1	277	65	69	11.9999
CCUG	chr3:184106274-184106602(+)$1	328	66	70	11.9999
CCUG	chr16:88781840-88782124(-)$1	284	0	4	11.9999
CCUG	chr3:52841703-52841966(+)$1	263	153	157	11.9999
CCUG	chr3:132277719-132277963(-)$1	244	3	7	11.9999
CCUG	chr3:184101210-184101456(+)$1	246	88	92	11.9999
CCUG	chr11:65404296-65404539(+)$1	243	51	55	11.9999
CCUG	chr3:49722120-49722390(-)$1	270	112	116	11.9999
CCUG	chr3:52842059-52842294(+)$1	235	204	208	11.9999
CCUG	chr3:52842106-52842334(+)$1	228	157	161	11.9999
CCUG	chr11:77589683-77589936(-)$1	253	5	9	11.9999
CCUG	chr2:219563719-219564026(+)$1	307	43	47	11.9999
CCUG	chr20:61471945-61472181(+)$1	236	4	8	11.9999
CCUG	chr3:52842505-52842739(+)$1	234	182	186	11.9999
CCUG	chrM:15732-15940(+)$1	208	21	25	11.9999

#otherMatches

#Struct PSSM
qqqd	chr17:1680598-1680814(+)$1	216	19	23	11.9999
ccc"	chr20:44978891-44979167(-)$1	276	50	54	11.9999
cc:e	chr3:184107068-184107369(+)$1	301	12	16	11.9999
dd""	chr16:2225955-2226215(+)$1	260	5	9	11.9999
mccc	chr11:62370238-62370537(-)$1	299	19	23	11.9999
eeee	chrX:70777294-70777540(+)$1	246	1	5	11.9999
ccc4	chr9:117062251-117062477(+)$1	226	22	26	11.9999
qqcc	chr1:234742822-234743035(-)$1	213	76	80	11.9999
22cc	chr3:52842469-52842705(+)$1	236	218	222	11.9999
::ee	chr3:52842539-52842787(+)$1	248	148	152	11.9999
IIII	chr7:930549-930790(+)$1	241	232	236	11.9999
dddo	chr2:220074016-220074294(+)$1	278	2	6	11.9999
GGG{	chr1:46035510-46035746(+)$1	236	15	19	11.9999
hhhh	chr3:184101256-184101521(+)$1	265	42	46	11.9999
LIII	chr16:67917856-67918117(+)$1	261	5	9	11.9999
gg::	chr9:14737405-14737692(-)$1	287	149	153	11.9999
&&&d	chr3:184103819-184104045(+)$1	226	34	38	11.9999
====	chr17:80016415-80016696(-)$1	281	206	210	11.9999
dddd	chr14:103576588-103576837(+)$1	249	59	63	11.9999
iiii	chr3:184104216-184104470(+)$1	254	101	105	11.9999
d$$$	chr4:110662023-110662280(-)$1	257	38	42	11.9999
gggg	chr16:31202619-31202847(+)$1	228	144	148	11.9999
oooe	chr3:184106642-184106884(+)$1	242	84	88	11.9999
""dd	chr20:61468389-61468593(+)$1	204	22	26	11.9999
qqqq	chr1:153617564-153617821(+)$1	257	58	62	11.9999
:::d	chr19:45882858-45883166(-)$1	308	43	47	11.9999
FFFF	chr16:723779-724039(+)$1	260	5	9	11.9999
ggg[	chr5:167945994-167946272(+)$1	278	170	174	11.9999
:::d	chr19:18499630-18499894(+)$1	264	2	6	11.9999
iiii	chr3:52842102-52842306(+)$1	204	161	165	11.9999
JJJJ	chr9:117063626-117063842(+)$1	216	77	81	11.9999
cc:d	chr12:56119526-56119783(-)$1	257	89	93	11.9999
iiii	chr3:52842134-52842337(+)$1	203	129	133	11.9999
"""b	chr6:31498456-31498667(-)$1	211	84	88	11.9999
g]dd	chr1:19404368-19404616(-)$1	248	204	208	11.9999
FFFF	chr3:184104301-184104559(+)$1	258	16	20	11.9999
]a]e	chr3:132279844-132280087(-)$1	243	200	204	11.9999
ddd[	chr17:80400252-80400523(+)$1	271	3	7	11.9999
oogg	chrX:48682236-48682524(+)$1	288	123	127	11.9999
mmme	chr20:61468470-61468716(+)$1	246	44	48	11.9999
===]	chr12:30862661-30862939(-)$1	278	248	252	11.9999
ffff	chr20:61467728-61467955(+)$1	227	199	203	11.9999
HHHH	chr6:5109453-5109799(-)$1	346	45	49	11.9999
::::	chr14:24612503-24612731(-)$1	228	3	7	11.9999
"""e	chr9:19380088-19380331(-)$1	243	74	78	11.9999
FFFG	chr16:89265274-89265532(-)$1	258	6	10	11.9999
ADDD	chr1:43220552-43220823(-)$1	271	45	49	11.9999
D{CC	chr1:19403242-19403498(-)$1	256	28	32	11.9999
gggg	chr1:155290210-155290483(+)$1	273	132	136	11.9999
eeee	chr3:184106580-184106842(+)$1	262	27	31	11.9999
eeee	chr16:31202266-31202521(+)$1	255	145	149	11.9999
e###	chr3:53898716-53898934(+)$1	218	8	12	11.9999
ffff	chr17:74383271-74383530(+)$1	259	20	24	11.9999
fffd	chr20:34129986-34130230(+)$1	244	8	12	11.9999
pppp	chr3:49721395-49721652(-)$1	257	22	26	11.9999
c::f	chr20:33867346-33867605(-)$1	259	129	133	11.9999
DD{E	chr9:117063464-117063685(+)$1	221	69	73	11.9999
pppp	chr3:49721453-49721706(-)$1	253	76	80	11.9999
::CC	chr17:1680614-1680849(+)$1	235	3	7	11.9999
bboo	chr19:36290819-36291066(-)$1	247	6	10	11.9999
ammm	chr17:40268952-40269190(-)$1	238	181	185	11.9999
:HHH	chr5:179264352-179264634(-)$1	282	140	144	11.9999
[ddd	chr7:151947837-151948071(-)$1	234	49	53	11.9999
h:::	chr16:74908012-74908256(-)$1	244	38	42	11.9999
DDDD	chrX:18911469-18911743(-)$1	274	148	152	11.9999
YCCC	chr14:103576679-103576946(+)$1	267	253	257	11.9999
leee	chr17:78093022-78093320(+)$1	298	50	54	11.9999
oood	chrM:15740-15971(+)$1	231	13	17	11.9999
ffff	chr22:36661961-36662196(+)$1	235	151	155	11.9999
bb[a	chr2:42990349-42990583(-)$1	234	34	38	11.9999
blll	chr5:74016886-74017188(+)$1	302	259	263	11.9999
HHHK	chr16:31202321-31202532(+)$1	211	90	94	11.9999
!!cc	chr14:39819238-39819544(+)$1	306	113	117	11.9999
qqqd	chr17:1680558-1680798(+)$1	240	59	63	11.9999
ddmm	chr9:117069913-117070157(+)$1	244	28	32	11.9999
eeee	chr8:145693802-145694079(+)$1	277	65	69	11.9999
FFFF	chr3:184106274-184106602(+)$1	328	66	70	11.9999
CCCK	chr16:88781840-88782124(-)$1	284	0	4	11.9999
dddd	chr3:52841703-52841966(+)$1	263	153	157	11.9999
::::	chr3:132277719-132277963(-)$1	244	3	7	11.9999
]ddd	chr3:184101210-184101456(+)$1	246	88	92	11.9999
[bbl	chr11:65404296-65404539(+)$1	243	51	55	11.9999
dddd	chr3:49722120-49722390(-)$1	270	112	116	11.9999
iiii	chr3:52842059-52842294(+)$1	235	204	208	11.9999
iiii	chr3:52842106-52842334(+)$1	228	157	161	11.9999
fff"	chr11:77589683-77589936(-)$1	253	5	9	11.9999
cc44	chr2:219563719-219564026(+)$1	307	43	47	11.9999
GGGG	chr20:61471945-61472181(+)$1	236	4	8	11.9999
aeee	chr3:52842505-52842739(+)$1	234	182	186	11.9999
oood	chrM:15732-15940(+)$1	208	21	25	11.9999

#DB
...)	chr17:1680598-1680814(+)$1	1	19	23	11.9999
(((.	chr20:44978891-44979167(-)$1	1	50	54	11.9999
)).(	chr3:184107068-184107369(+)$1	1	12	16	11.9999
((..	chr16:2225955-2226215(+)$1	1	5	9	11.9999
.)))	chr11:62370238-62370537(-)$1	1	19	23	11.9999
((((	chrX:70777294-70777540(+)$1	1	1	5	11.9999
))).	chr9:117062251-117062477(+)$1	1	22	26	11.9999
..))	chr1:234742822-234743035(-)$1	1	76	80	11.9999
..))	chr3:52842469-52842705(+)$1	1	218	222	11.9999
..((	chr3:52842539-52842787(+)$1	1	148	152	11.9999
))))	chr7:930549-930790(+)$1	1	232	236	11.9999
(((.	chr2:220074016-220074294(+)$1	1	2	6	11.9999
(((.	chr1:46035510-46035746(+)$1	1	15	19	11.9999
((((	chr3:184101256-184101521(+)$1	1	42	46	11.9999
.(((	chr16:67917856-67918117(+)$1	1	5	9	11.9999
))..	chr9:14737405-14737692(-)$1	1	149	153	11.9999
...(	chr3:184103819-184104045(+)$1	1	34	38	11.9999
((((	chr17:80016415-80016696(-)$1	1	206	210	11.9999
))))	chr14:103576588-103576837(+)$1	1	59	63	11.9999
))))	chr3:184104216-184104470(+)$1	1	101	105	11.9999
(...	chr4:110662023-110662280(-)$1	1	38	42	11.9999
((((	chr16:31202619-31202847(+)$1	1	144	148	11.9999
...)	chr3:184106642-184106884(+)$1	1	84	88	11.9999
..((	chr20:61468389-61468593(+)$1	1	22	26	11.9999
....	chr1:153617564-153617821(+)$1	1	58	62	11.9999
...(	chr19:45882858-45883166(-)$1	1	43	47	11.9999
((((	chr16:723779-724039(+)$1	1	5	9	11.9999
(((.	chr5:167945994-167946272(+)$1	1	170	174	11.9999
...(	chr19:18499630-18499894(+)$1	1	2	6	11.9999
))))	chr3:52842102-52842306(+)$1	1	161	165	11.9999
))))	chr9:117063626-117063842(+)$1	1	77	81	11.9999
)).(	chr12:56119526-56119783(-)$1	1	89	93	11.9999
))))	chr3:52842134-52842337(+)$1	1	129	133	11.9999
...(	chr6:31498456-31498667(-)$1	1	84	88	11.9999
).))	chr1:19404368-19404616(-)$1	1	204	208	11.9999
((((	chr3:184104301-184104559(+)$1	1	16	20	11.9999
.).)	chr3:132279844-132280087(-)$1	1	200	204	11.9999
(((.	chr17:80400252-80400523(+)$1	1	3	7	11.9999
..))	chrX:48682236-48682524(+)$1	1	123	127	11.9999
...)	chr20:61468470-61468716(+)$1	1	44	48	11.9999
))).	chr12:30862661-30862939(-)$1	1	248	252	11.9999
))))	chr20:61467728-61467955(+)$1	1	199	203	11.9999
((((	chr6:5109453-5109799(-)$1	1	45	49	11.9999
....	chr14:24612503-24612731(-)$1	1	3	7	11.9999
...(	chr9:19380088-19380331(-)$1	1	74	78	11.9999
((((	chr16:89265274-89265532(-)$1	1	6	10	11.9999
((((	chr1:43220552-43220823(-)$1	1	45	49	11.9999
(.((	chr1:19403242-19403498(-)$1	1	28	32	11.9999
((((	chr1:155290210-155290483(+)$1	1	132	136	11.9999
))))	chr3:184106580-184106842(+)$1	1	27	31	11.9999
))))	chr16:31202266-31202521(+)$1	1	145	149	11.9999
(...	chr3:53898716-53898934(+)$1	1	8	12	11.9999
)))(	chr17:74383271-74383530(+)$1	1	20	24	11.9999
((((	chr20:34129986-34130230(+)$1	1	8	12	11.9999
....	chr3:49721395-49721652(-)$1	1	22	26	11.9999
)..(	chr20:33867346-33867605(-)$1	1	129	133	11.9999
((.(	chr9:117063464-117063685(+)$1	1	69	73	11.9999
....	chr3:49721453-49721706(-)$1	1	76	80	11.9999
..((	chr17:1680614-1680849(+)$1	1	3	7	11.9999
((..	chr19:36290819-36291066(-)$1	1	6	10	11.9999
(...	chr17:40268952-40269190(-)$1	1	181	185	11.9999
.)))	chr5:179264352-179264634(-)$1	1	140	144	11.9999
.(((	chr7:151947837-151948071(-)$1	1	49	53	11.9999
)...	chr16:74908012-74908256(-)$1	1	38	42	11.9999
))))	chrX:18911469-18911743(-)$1	1	148	152	11.9999
.)))	chr14:103576679-103576946(+)$1	1	253	257	11.9999
.)))	chr17:78093022-78093320(+)$1	1	50	54	11.9999
...)	chrM:15740-15971(+)$1	1	13	17	11.9999
((((	chr22:36661961-36662196(+)$1	1	151	155	11.9999
((.(	chr2:42990349-42990583(-)$1	1	34	38	11.9999
(...	chr5:74016886-74017188(+)$1	1	259	263	11.9999
(((.	chr16:31202321-31202532(+)$1	1	90	94	11.9999
..((	chr14:39819238-39819544(+)$1	1	113	117	11.9999
...)	chr17:1680558-1680798(+)$1	1	59	63	11.9999
((..	chr9:117069913-117070157(+)$1	1	28	32	11.9999
))))	chr8:145693802-145694079(+)$1	1	65	69	11.9999
((((	chr3:184106274-184106602(+)$1	1	66	70	11.9999
(((.	chr16:88781840-88782124(-)$1	1	0	4	11.9999
))))	chr3:52841703-52841966(+)$1	1	153	157	11.9999
....	chr3:132277719-132277963(-)$1	1	3	7	11.9999
.)))	chr3:184101210-184101456(+)$1	1	88	92	11.9999
.((.	chr11:65404296-65404539(+)$1	1	51	55	11.9999
))))	chr3:49722120-49722390(-)$1	1	112	116	11.9999
))))	chr3:52842059-52842294(+)$1	1	204	208	11.9999
))))	chr3:52842106-52842334(+)$1	1	157	161	11.9999
(((.	chr11:77589683-77589936(-)$1	1	5	9	11.9999
))..	chr2:219563719-219564026(+)$1	1	43	47	11.9999
((((	chr20:61471945-61472181(+)$1	1	4	8	11.9999
))))	chr3:52842505-52842739(+)$1	1	182	186	11.9999
...)	chrM:15732-15940(+)$1	1	21	25	11.9999

#PSSM
C : 0.97	c : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	

#score	1079.9999999999995
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_transcript_m2_run1.nuc.txt

#NT
GCU	chr11:2150863-2151081(-)$1	218	52	55	8.9999
gcU	chr17:56429563-56429779(-)$1	216	4	7	8.9999
gcu	chr2:79795928-79796153(+)$1	225	5	8	8.9999
GCU	chr14:105994973-105995254(+)$1	281	42	45	8.9999
GCU	chrM:1244-1448(+)$1	204	4	7	8.9999
GCU	chrM:596-803(+)$1	207	32	35	8.9999
GCU	chr16:3421875-3422132(-)$1	257	38	41	8.9999
GCU	chr5:134263361-134263582(+)$1	221	30	33	8.9999
GCU	chrM:12063-12272(+)$1	209	123	126	8.9999
GCU	chr11:2150849-2151053(-)$1	204	24	27	8.9999
gcu	chrM:2533-2738(+)$1	205	104	107	8.9999
GCU	chrM:1268-1479(+)$1	211	22	25	8.9999
GCU	chrM:1248-1450(+)$1	202	0	3	8.9999
GCU	chr17:22023635-22023929(+)$1	294	141	144	8.9999
GCU	chrM:8070-8275(+)$1	205	5	8	8.9999
GCU	chrM:1300-1504(+)$1	204	63	66	8.9999
GCU	chrM:5917-6152(+)$1	235	62	65	8.9999
GCU	chrM:2891-3113(+)$1	222	132	135	8.9999
GCU	chrM:1232-1444(+)$1	212	16	19	8.9999
GCU	chrM:4194-4431(+)$1	237	117	120	8.9999
gcu	chr3:193373466-193373671(+)$1	205	42	45	8.9999
gcu	chrM:2528-2733(+)$1	205	109	112	8.9999
GCU	chrM:14201-14404(-)$1	203	38	41	8.9999
GCU	chrM:516-735(+)$1	219	11	14	8.9999
GCU	chrM:3135-3378(+)$1	243	234	237	8.9999
GCU	chrM:12751-12970(+)$1	219	13	16	8.9999
GCU	chr17:48190199-48190411(-)$1	212	7	10	8.9999
GCU	chrM:1316-1531(+)$1	215	47	50	8.9999
GCU	chr5:79947159-79947457(-)$1	298	12	15	8.9999
GCU	chrM:5912-6117(+)$1	205	67	70	8.9999
gcu	chr1:77436808-77437047(+)$1	239	61	64	8.9999
GCU	chr1:567833-568072(+)$1	239	49	52	8.9999
GCU	chrM:12113-12344(+)$1	231	73	76	8.9999
GCU	chrM:1285-1487(+)$1	202	5	8	8.9999
GCU	chr5:134261671-134261900(+)$1	229	60	63	8.9999
gcu	chr19:45981755-45981961(-)$1	206	48	51	8.9999
GCU	chr11:2150800-2151012(-)$1	212	30	33	8.9999
GCU	chr1:1374853-1375099(+)$1	246	40	43	8.9999
gcu	chr8:28318495-28318734(-)$1	239	199	202	8.9999
GCU	chrM:12685-12891(+)$1	206	51	54	8.9999
GCU	chr11:2150812-2151018(-)$1	206	36	39	8.9999
gcu	chrM:2594-2803(+)$1	209	43	46	8.9999
GCU	chr11:2150853-2151058(-)$1	205	29	32	8.9999
GCU	chrM:1287-1491(+)$1	204	3	6	8.9999
GCU	chrM:603-806(+)$1	203	25	28	8.9999
GCU	chrM:12671-12885(+)$1	214	65	68	8.9999
GCU	chrM:1442-1655(+)$1	213	8	11	8.9999
gcU	chr6:157100659-157100905(+)$1	246	130	133	8.9999
GCU	chr11:838320-838607(+)$1	287	4	7	8.9999
GCU	chrM:611-816(+)$1	205	17	20	8.9999
GCU	chrM:8079-8292(+)$1	213	12	15	8.9999
GCU	chr1:27320445-27320713(+)$1	268	3	6	8.9999
GCU	chrM:14158-14384(-)$1	226	18	21	8.9999
GCU	chrM:12181-12407(+)$1	226	5	8	8.9999
GCU	chr2:20196840-20197072(-)$1	232	73	76	8.9999
GCU	chrM:619-828(+)$1	209	9	12	8.9999
GCU	chr5:134263326-134263561(+)$1	235	65	68	8.9999
GCU	chrM:2970-3176(+)$1	206	53	56	8.9999
GCU	chrM:8092-8297(+)$1	205	49	52	8.9999
GCU	chrM:8053-8270(+)$1	217	22	25	8.9999
GCU	chr1:240775185-240775407(-)$1	222	22	25	8.9999
GCU	chr2:95564800-95565039(-)$1	239	190	193	8.9999
GCU	chrM:488-714(+)$1	226	39	42	8.9999
GCU	chrX:20284739-20285011(-)$1	272	22	25	8.9999
GCU	chr19:893459-893690(+)$1	231	1	4	8.9999
GCU	chrM:1250-1453(+)$1	203	40	43	8.9999
GCU	chr7:63565915-63566161(+)$1	246	16	19	8.9999
GCU	chrM:1279-1485(+)$1	206	11	14	8.9999
gcu	chr11:10529566-10529799(-)$1	233	29	32	8.9999
GCU	chrM:14223-14445(-)$1	222	79	82	8.9999
GCU	chr11:2150788-2151000(-)$1	212	18	21	8.9999
gcu	chrM:2545-2752(+)$1	207	92	95	8.9999
GCU	chr11:2150833-2151047(-)$1	214	18	21	8.9999
GCU	chr14:32954182-32954428(+)$1	246	25	28	8.9999
GCU	chr5:134261512-134261783(-)$1	271	33	36	8.9999
GCU	chrM:14364-14574(-)$1	210	119	122	8.9999
gcu	chrM:2603-2805(+)$1	202	34	37	8.9999
GCU	chrM:2916-3130(+)$1	214	107	110	8.9999
GCU	chr5:134259766-134260011(+)$1	245	55	58	8.9999
GCU	chrM:2913-3116(+)$1	203	110	113	8.9999
GCU	chrM:10328-10552(+)$1	224	209	212	8.9999
GCU	chr5:134260120-134260397(+)$1	277	90	93	8.9999
GCU	chr4:87080110-87080340(+)$1	230	13	16	8.9999
GCU	chr17:2593086-2593349(-)$1	263	8	11	8.9999
GCU	chr14:32953594-32953827(-)$1	233	50	53	8.9999
GCU	chr11:62285830-62286077(-)$1	247	4	7	8.9999
GCU	chr5:79946940-79947195(-)$1	255	5	8	8.9999
gcU	chr12:123756216-123756482(-)$1	266	70	73	8.9999
GCU	chrM:1174-1379(+)$1	205	8	11	8.9999
GCU	chrM:12725-12951(+)$1	226	11	14	8.9999
GCU	chrM:1259-1464(+)$1	205	31	34	8.9999
GCU	chr11:2151067-2151284(-)$1	217	25	28	8.9999
GCU	chr8:68497602-68497855(-)$1	253	21	24	8.9999
GCU	chr5:134263540-134263770(+)$1	230	33	36	8.9999
gcu	chrM:2538-2745(+)$1	207	99	102	8.9999
gcu	chrM:2519-2728(+)$1	209	118	121	8.9999

#otherMatches

#Struct PSSM
ddd	chrM:14212-14422(-)$1	210	56	59	8.9999
e44	chr11:2150863-2151081(-)$1	218	52	55	8.9999
GGG	chr17:56429563-56429779(-)$1	216	4	7	8.9999
mmm	chr2:79795928-79796153(+)$1	225	5	8	8.9999
]cc	chr14:105994973-105995254(+)$1	281	42	45	8.9999
ee"	chrM:1244-1448(+)$1	204	4	7	8.9999
eee	chrM:596-803(+)$1	207	32	35	8.9999
f:c	chr16:3421875-3422132(-)$1	257	38	41	8.9999
GGG	chr5:134263361-134263582(+)$1	221	30	33	8.9999
D::	chrM:12063-12272(+)$1	209	123	126	8.9999
QQQ	chr11:2150849-2151053(-)$1	204	24	27	8.9999
FFF	chrM:2533-2738(+)$1	205	104	107	8.9999
UUU	chrM:1268-1479(+)$1	211	22	25	8.9999
:EE	chrM:1248-1450(+)$1	202	0	3	8.9999
ggg	chr17:22023635-22023929(+)$1	294	141	144	8.9999
fff	chrM:8070-8275(+)$1	205	5	8	8.9999
===	chrM:1300-1504(+)$1	204	63	66	8.9999
DDD	chrM:5917-6152(+)$1	235	62	65	8.9999
ggg	chrM:2891-3113(+)$1	222	132	135	8.9999
ee"	chrM:1232-1444(+)$1	212	16	19	8.9999
D::	chrM:4194-4431(+)$1	237	117	120	8.9999
dcc	chr3:193373466-193373671(+)$1	205	42	45	8.9999
ccc	chrM:2528-2733(+)$1	205	109	112	8.9999
eee	chrM:14201-14404(-)$1	203	38	41	8.9999
CCC	chrM:516-735(+)$1	219	11	14	8.9999
ee:	chrM:3135-3378(+)$1	243	234	237	8.9999
===	chrM:12751-12970(+)$1	219	13	16	8.9999
{BB	chr17:48190199-48190411(-)$1	212	7	10	8.9999
===	chrM:1316-1531(+)$1	215	47	50	8.9999
:::	chr5:79947159-79947457(-)$1	298	12	15	8.9999
fff	chrM:5912-6117(+)$1	205	67	70	8.9999
i[=	chr1:77436808-77437047(+)$1	239	61	64	8.9999
fff	chr1:567833-568072(+)$1	239	49	52	8.9999
FFF	chrM:12113-12344(+)$1	231	73	76	8.9999
DDD	chrM:1285-1487(+)$1	202	5	8	8.9999
ddd	chr5:134261671-134261900(+)$1	229	60	63	8.9999
fpp	chr19:45981755-45981961(-)$1	206	48	51	8.9999
===	chr11:2150800-2151012(-)$1	212	30	33	8.9999
b[e	chr1:1374853-1375099(+)$1	246	40	43	8.9999
nnn	chr8:28318495-28318734(-)$1	239	199	202	8.9999
eee	chrM:12685-12891(+)$1	206	51	54	8.9999
===	chr11:2150812-2151018(-)$1	206	36	39	8.9999
GGG	chrM:2594-2803(+)$1	209	43	46	8.9999
QQQ	chr11:2150853-2151058(-)$1	205	29	32	8.9999
DDD	chrM:1287-1491(+)$1	204	3	6	8.9999
eee	chrM:603-806(+)$1	203	25	28	8.9999
eee	chrM:12671-12885(+)$1	214	65	68	8.9999
:::	chrM:1442-1655(+)$1	213	8	11	8.9999
]cc	chr6:157100659-157100905(+)$1	246	130	133	8.9999
ggg	chr11:838320-838607(+)$1	287	4	7	8.9999
eee	chrM:611-816(+)$1	205	17	20	8.9999
ESS	chrM:8079-8292(+)$1	213	12	15	8.9999
FFF	chr1:27320445-27320713(+)$1	268	3	6	8.9999
eee	chrM:14158-14384(-)$1	226	18	21	8.9999
FFF	chrM:12181-12407(+)$1	226	5	8	8.9999
ccs	chr2:20196840-20197072(-)$1	232	73	76	8.9999
eee	chrM:619-828(+)$1	209	9	12	8.9999
#hh	chr5:134263326-134263561(+)$1	235	65	68	8.9999
ggg	chrM:2970-3176(+)$1	206	53	56	8.9999
:::	chrM:8092-8297(+)$1	205	49	52	8.9999
fff	chrM:8053-8270(+)$1	217	22	25	8.9999
eeD	chr1:240775185-240775407(-)$1	222	22	25	8.9999
DDZ	chr2:95564800-95565039(-)$1	239	190	193	8.9999
ddd	chrM:488-714(+)$1	226	39	42	8.9999
lll	chrX:20284739-20285011(-)$1	272	22	25	8.9999
:::	chr19:893459-893690(+)$1	231	1	4	8.9999
cc:	chrM:1250-1453(+)$1	203	40	43	8.9999
ooo	chr7:63565915-63566161(+)$1	246	16	19	8.9999
c::	chrM:1279-1485(+)$1	206	11	14	8.9999
GGG	chr11:10529566-10529799(-)$1	233	29	32	8.9999
ddd	chrM:14223-14445(-)$1	222	79	82	8.9999
EEE	chr11:2150788-2151000(-)$1	212	18	21	8.9999
GGG	chrM:2545-2752(+)$1	207	92	95	8.9999
DDD	chr11:2150833-2151047(-)$1	214	18	21	8.9999
"""	chr14:32954182-32954428(+)$1	246	25	28	8.9999
EEE	chr5:134261512-134261783(-)$1	271	33	36	8.9999
ddd	chrM:14364-14574(-)$1	210	119	122	8.9999
GGG	chrM:2603-2805(+)$1	202	34	37	8.9999
ggg	chrM:2916-3130(+)$1	214	107	110	8.9999
eee	chr5:134259766-134260011(+)$1	245	55	58	8.9999
ggg	chrM:2913-3116(+)$1	203	110	113	8.9999
GGG	chrM:10328-10552(+)$1	224	209	212	8.9999
fff	chr5:134260120-134260397(+)$1	277	90	93	8.9999
HHH	chr4:87080110-87080340(+)$1	230	13	16	8.9999
GGG	chr17:2593086-2593349(-)$1	263	8	11	8.9999
JJJ	chr14:32953594-32953827(-)$1	233	50	53	8.9999
E{B	chr11:62285830-62286077(-)$1	247	4	7	8.9999
LLD	chr5:79946940-79947195(-)$1	255	5	8	8.9999
iii	chr12:123756216-123756482(-)$1	266	70	73	8.9999
D::	chrM:1174-1379(+)$1	205	8	11	8.9999
DDD	chrM:12725-12951(+)$1	226	11	14	8.9999
cc:	chrM:1259-1464(+)$1	205	31	34	8.9999
ttt	chr11:2151067-2151284(-)$1	217	25	28	8.9999
HHH	chr8:68497602-68497855(-)$1	253	21	24	8.9999
ggg	chr5:134263540-134263770(+)$1	230	33	36	8.9999
GGG	chrM:2538-2745(+)$1	207	99	102	8.9999
!cc	chrM:2519-2728(+)$1	209	118	121	8.9999

#DB
(((	chrM:14212-14422(-)$1	1	56	59	8.9999
)..	chr11:2150863-2151081(-)$1	1	52	55	8.9999
(((	chr17:56429563-56429779(-)$1	1	4	7	8.9999
...	chr2:79795928-79796153(+)$1	1	5	8	8.9999
.))	chr14:105994973-105995254(+)$1	1	42	45	8.9999
((.	chrM:1244-1448(+)$1	1	4	7	8.9999
(((	chrM:596-803(+)$1	1	32	35	8.9999
).(	chr16:3421875-3422132(-)$1	1	38	41	8.9999
(((	chr5:134263361-134263582(+)$1	1	30	33	8.9999
)..	chrM:12063-12272(+)$1	1	123	126	8.9999
...	chr11:2150849-2151053(-)$1	1	24	27	8.9999
(((	chrM:2533-2738(+)$1	1	104	107	8.9999
...	chrM:1268-1479(+)$1	1	22	25	8.9999
.((	chrM:1248-1450(+)$1	1	0	3	8.9999
)))	chr17:22023635-22023929(+)$1	1	141	144	8.9999
(((	chrM:8070-8275(+)$1	1	5	8	8.9999
)))	chrM:1300-1504(+)$1	1	63	66	8.9999
(((	chrM:5917-6152(+)$1	1	62	65	8.9999
)))	chrM:2891-3113(+)$1	1	132	135	8.9999
((.	chrM:1232-1444(+)$1	1	16	19	8.9999
)..	chrM:4194-4431(+)$1	1	117	120	8.9999
(((	chr3:193373466-193373671(+)$1	1	42	45	8.9999
)))	chrM:2528-2733(+)$1	1	109	112	8.9999
(((	chrM:14201-14404(-)$1	1	38	41	8.9999
(((	chrM:516-735(+)$1	1	11	14	8.9999
)).	chrM:3135-3378(+)$1	1	234	237	8.9999
(((	chrM:12751-12970(+)$1	1	13	16	8.9999
.((	chr17:48190199-48190411(-)$1	1	7	10	8.9999
)))	chrM:1316-1531(+)$1	1	47	50	8.9999
...	chr5:79947159-79947457(-)$1	1	12	15	8.9999
(((	chrM:5912-6117(+)$1	1	67	70	8.9999
(.(	chr1:77436808-77437047(+)$1	1	61	64	8.9999
(((	chr1:567833-568072(+)$1	1	49	52	8.9999
(((	chrM:12113-12344(+)$1	1	73	76	8.9999
(((	chrM:1285-1487(+)$1	1	5	8	8.9999
)))	chr5:134261671-134261900(+)$1	1	60	63	8.9999
(..	chr19:45981755-45981961(-)$1	1	48	51	8.9999
)))	chr11:2150800-2151012(-)$1	1	30	33	8.9999
(.(	chr1:1374853-1375099(+)$1	1	40	43	8.9999
...	chr8:28318495-28318734(-)$1	1	199	202	8.9999
)))	chrM:12685-12891(+)$1	1	51	54	8.9999
)))	chr11:2150812-2151018(-)$1	1	36	39	8.9999
(((	chrM:2594-2803(+)$1	1	43	46	8.9999
...	chr11:2150853-2151058(-)$1	1	29	32	8.9999
(((	chrM:1287-1491(+)$1	1	3	6	8.9999
(((	chrM:603-806(+)$1	1	25	28	8.9999
)))	chrM:12671-12885(+)$1	1	65	68	8.9999
...	chrM:1442-1655(+)$1	1	8	11	8.9999
.))	chr6:157100659-157100905(+)$1	1	130	133	8.9999
(((	chr11:838320-838607(+)$1	1	4	7	8.9999
(((	chrM:611-816(+)$1	1	17	20	8.9999
(..	chrM:8079-8292(+)$1	1	12	15	8.9999
(((	chr1:27320445-27320713(+)$1	1	3	6	8.9999
(((	chrM:14158-14384(-)$1	1	18	21	8.9999
(((	chrM:12181-12407(+)$1	1	5	8	8.9999
((.	chr2:20196840-20197072(-)$1	1	73	76	8.9999
(((	chrM:619-828(+)$1	1	9	12	8.9999
.((	chr5:134263326-134263561(+)$1	1	65	68	8.9999
)))	chrM:2970-3176(+)$1	1	53	56	8.9999
...	chrM:8092-8297(+)$1	1	49	52	8.9999
(((	chrM:8053-8270(+)$1	1	22	25	8.9999
))(	chr1:240775185-240775407(-)$1	1	22	25	8.9999
)).	chr2:95564800-95565039(-)$1	1	190	193	8.9999
)))	chrM:488-714(+)$1	1	39	42	8.9999
...	chrX:20284739-20285011(-)$1	1	22	25	8.9999
...	chr19:893459-893690(+)$1	1	1	4	8.9999
)).	chrM:1250-1453(+)$1	1	40	43	8.9999
...	chr7:63565915-63566161(+)$1	1	16	19	8.9999
)..	chrM:1279-1485(+)$1	1	11	14	8.9999
(((	chr11:10529566-10529799(-)$1	1	29	32	8.9999
(((	chrM:14223-14445(-)$1	1	79	82	8.9999
(((	chr11:2150788-2151000(-)$1	1	18	21	8.9999
(((	chrM:2545-2752(+)$1	1	92	95	8.9999
(((	chr11:2150833-2151047(-)$1	1	18	21	8.9999
...	chr14:32954182-32954428(+)$1	1	25	28	8.9999
(((	chr5:134261512-134261783(-)$1	1	33	36	8.9999
(((	chrM:14364-14574(-)$1	1	119	122	8.9999
(((	chrM:2603-2805(+)$1	1	34	37	8.9999
)))	chrM:2916-3130(+)$1	1	107	110	8.9999
(((	chr5:134259766-134260011(+)$1	1	55	58	8.9999
)))	chrM:2913-3116(+)$1	1	110	113	8.9999
)))	chrM:10328-10552(+)$1	1	209	212	8.9999
(((	chr5:134260120-134260397(+)$1	1	90	93	8.9999
(((	chr4:87080110-87080340(+)$1	1	13	16	8.9999
(((	chr17:2593086-2593349(-)$1	1	8	11	8.9999
(((	chr14:32953594-32953827(-)$1	1	50	53	8.9999
(.(	chr11:62285830-62286077(-)$1	1	4	7	8.9999
..(	chr5:79946940-79947195(-)$1	1	5	8	8.9999
)))	chr12:123756216-123756482(-)$1	1	70	73	8.9999
(..	chrM:1174-1379(+)$1	1	8	11	8.9999
(((	chrM:12725-12951(+)$1	1	11	14	8.9999
)).	chrM:1259-1464(+)$1	1	31	34	8.9999
...	chr11:2151067-2151284(-)$1	1	25	28	8.9999
(((	chr8:68497602-68497855(-)$1	1	21	24	8.9999
(((	chr5:134263540-134263770(+)$1	1	33	36	8.9999
(((	chrM:2538-2745(+)$1	1	99	102	8.9999
.((	chrM:2519-2728(+)$1	1	118	121	8.9999

#PSSM
G : 0.83	g : 0.16	
C : 0.83	c : 0.16	
U : 0.86	u : 0.13	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_transcript_m1_run2.nuc.txt

#NT
GGGUGGG	chr1:227148356-227148640(+)$1	284	112	119	20.9999
ggguggg	chr11:14520937-14521158(-)$1	221	2	9	20.9999
GGGUGGG	chr4:103747469-103747713(-)$1	244	141	148	20.9999
GGGUGGG	chr16:90015672-90015984(+)$1	312	47	54	20.9999
GGGUGGG	chr16:88812993-88813255(-)$1	262	92	99	20.9999
GGGUGGG	chr21:47639030-47639319(-)$1	289	29	36	20.9999
gggUGGG	chr5:81045886-81046163(-)$1	277	106	113	20.9999
GGGUGGG	chr1:154978274-154978520(+)$1	246	159	166	20.9999
GGGUGGG	chr11:2398872-2399135(+)$1	263	112	119	20.9999
GGGUGGG	chr16:1424642-1424884(-)$1	242	196	203	20.9999
GGGUGGG	chr6:160492283-160492542(+)$1	259	29	36	20.9999
GGGUGGG	chr12:96793369-96793646(-)$1	277	110	117	20.9999
GGGUGGG	chr19:18653594-18653872(-)$1	278	66	73	20.9999
GGGUGGG	chr21:45153175-45153451(+)$1	276	121	128	20.9999
GGGUGGG	chr19:2271193-2271431(+)$1	238	55	62	20.9999
GGGUGGG	chr12:121341337-121341637(-)$1	300	26	33	20.9999
GGGUGGG	chr22:19980963-19981224(-)$1	261	78	85	20.9999
GGGUGGG	chr7:76130353-76130614(+)$1	261	117	124	20.9999
GGGUGGG	chr19:46180580-46180841(+)$1	261	242	249	20.9999
ggguggg	chr16:1426502-1426726(-)$1	224	98	105	20.9999
ggguggg	chr22:49914218-49914449(-)$1	231	76	83	20.9999
GGGUGGG	chr22:50609897-50610160(+)$1	263	220	227	20.9999
GGGUGGG	chr10:103878167-103878413(-)$1	246	229	236	20.9999
GGGUGGG	chr12:118814598-118814946(+)$1	348	96	103	20.9999
GGGUGGG	chr17:56409007-56409233(-)$1	226	108	115	20.9999
GGGUGGG	chr17:7141366-7141612(-)$1	246	93	100	20.9999
GGGUGGG	chr4:187353284-187353601(-)$1	317	23	30	20.9999
GGGUGGG	chr19:41311182-41311421(+)$1	239	60	67	20.9999
ggguggg	chr6:158988442-158988760(+)$1	318	158	165	20.9999
GGGUGGG	chr11:396283-396542(+)$1	259	106	113	20.9999
GGGUGGG	chr19:5690545-5690797(+)$1	252	199	206	20.9999
GGGUGGG	chr8:144582375-144582637(-)$1	262	146	153	20.9999
ggguggg	chr11:2400249-2400488(+)$1	239	203	210	20.9999
GGGUGGG	chr8:101963096-101963399(-)$1	303	75	82	20.9999
GGGUGGG	chr9:126030074-126030319(-)$1	245	227	234	20.9999
GGGUGGG	chr8:145032508-145032810(-)$1	302	187	194	20.9999
GGGUGGG	chr16:88725288-88725547(-)$1	259	240	247	20.9999
GGGUGGG	chr11:126146316-126146599(+)$1	283	114	121	20.9999
GGGUGGG	chr4:904301-904625(-)$1	324	279	286	20.9999
GGGUGGG	chr9:126029877-126030122(-)$1	245	30	37	20.9999
GGGUGGG	chr22:50912495-50912784(-)$1	289	209	216	20.9999
GGGUGGG	chr11:2412313-2412553(+)$1	240	193	200	20.9999
GGGUGGG	chrX:153780483-153780766(+)$1	283	3	10	20.9999

#otherMatches

#Struct PSSM
ggg]ddd	chrX:129216908-129217161(-)$1	253	56	63	20.9999
{BB{FFF	chr1:227148356-227148640(+)$1	284	112	119	20.9999
dd[aeee	chr11:14520937-14521158(-)$1	221	2	9	20.9999
ggggg##	chr4:103747469-103747713(-)$1	244	141	148	20.9999
hhhhhhh	chr16:90015672-90015984(+)$1	312	47	54	20.9999
ddddzzz	chr16:88812993-88813255(-)$1	262	92	99	20.9999
GGG{BB{	chr21:47639030-47639319(-)$1	289	29	36	20.9999
33=====	chr5:81045886-81046163(-)$1	277	106	113	20.9999
ddfffff	chr1:154978274-154978520(+)$1	246	159	166	20.9999
fffff[b	chr11:2398872-2399135(+)$1	263	112	119	20.9999
=======	chr16:1424642-1424884(-)$1	242	196	203	20.9999
ddddfff	chr6:160492283-160492542(+)$1	259	29	36	20.9999
ffffffe	chr12:96793369-96793646(-)$1	277	110	117	20.9999
ee[a[dd	chr19:18653594-18653872(-)$1	278	66	73	20.9999
JJJJJJJ	chr21:45153175-45153451(+)$1	276	121	128	20.9999
GGGGGG=	chr19:2271193-2271431(+)$1	238	55	62	20.9999
LA{BBMM	chr12:121341337-121341637(-)$1	300	26	33	20.9999
CCC{GGG	chr22:19980963-19981224(-)$1	261	78	85	20.9999
=ccc:cc	chr7:76130353-76130614(+)$1	261	117	124	20.9999
A}A}GGG	chr19:46180580-46180841(+)$1	261	242	249	20.9999
33ccchh	chr16:1426502-1426726(-)$1	224	98	105	20.9999
FFFEEEE	chr22:49914218-49914449(-)$1	231	76	83	20.9999
ffffff:	chr22:50609897-50610160(+)$1	263	220	227	20.9999
III}BB}	chr10:103878167-103878413(-)$1	246	229	236	20.9999
EEEEEEE	chr12:118814598-118814946(+)$1	348	96	103	20.9999
::fffff	chr17:56409007-56409233(-)$1	226	108	115	20.9999
hhhh[gg	chr17:7141366-7141612(-)$1	246	93	100	20.9999
EEEE{CC	chr4:187353284-187353601(-)$1	317	23	30	20.9999
cc[eeee	chr19:41311182-41311421(+)$1	239	60	67	20.9999
mmmmbb]	chr6:158988442-158988760(+)$1	318	158	165	20.9999
mmma]ff	chr11:396283-396542(+)$1	259	106	113	20.9999
hhhhhhh	chr19:5690545-5690797(+)$1	252	199	206	20.9999
iiiiiii	chr8:144582375-144582637(-)$1	262	146	153	20.9999
eeeeggg	chr11:2400249-2400488(+)$1	239	203	210	20.9999
ff]a]ee	chr8:101963096-101963399(-)$1	303	75	82	20.9999
9999999	chr9:126030074-126030319(-)$1	245	227	234	20.9999
ddd]ccc	chr8:145032508-145032810(-)$1	302	187	194	20.9999
}CCC:::	chr16:88725288-88725547(-)$1	259	240	247	20.9999
hhhh22c	chr11:126146316-126146599(+)$1	283	114	121	20.9999
IIIIYYC	chr4:904301-904625(-)$1	324	279	286	20.9999
!ccczzz	chr9:126029877-126030122(-)$1	245	30	37	20.9999
gggg[gg	chr22:50912495-50912784(-)$1	289	209	216	20.9999
"a[aooo	chr11:2412313-2412553(+)$1	240	193	200	20.9999
BBHHHHH	chrX:153780483-153780766(+)$1	283	3	10	20.9999

#DB
))).)))	chrX:129216908-129217161(-)$1	1	56	63	20.9999
.((.(((	chr1:227148356-227148640(+)$1	1	112	119	20.9999
((.((((	chr11:14520937-14521158(-)$1	1	2	9	20.9999
(((((..	chr4:103747469-103747713(-)$1	1	141	148	20.9999
(((((((	chr16:90015672-90015984(+)$1	1	47	54	20.9999
((((...	chr16:88812993-88813255(-)$1	1	92	99	20.9999
(((.((.	chr21:47639030-47639319(-)$1	1	29	36	20.9999
..)))))	chr5:81045886-81046163(-)$1	1	106	113	20.9999
(((((((	chr1:154978274-154978520(+)$1	1	159	166	20.9999
(((((.(	chr11:2398872-2399135(+)$1	1	112	119	20.9999
)))))))	chr16:1424642-1424884(-)$1	1	196	203	20.9999
(((((((	chr6:160492283-160492542(+)$1	1	29	36	20.9999
(((((((	chr12:96793369-96793646(-)$1	1	110	117	20.9999
((.(.((	chr19:18653594-18653872(-)$1	1	66	73	20.9999
(((((((	chr21:45153175-45153451(+)$1	1	121	128	20.9999
(((((((	chr19:2271193-2271431(+)$1	1	55	62	20.9999
.(.((..	chr12:121341337-121341637(-)$1	1	26	33	20.9999
(((.(((	chr22:19980963-19981224(-)$1	1	78	85	20.9999
)))).((	chr7:76130353-76130614(+)$1	1	117	124	20.9999
).).)))	chr19:46180580-46180841(+)$1	1	242	249	20.9999
..)))))	chr16:1426502-1426726(-)$1	1	98	105	20.9999
(((((((	chr22:49914218-49914449(-)$1	1	76	83	20.9999
)))))).	chr22:50609897-50610160(+)$1	1	220	227	20.9999
))).)).	chr10:103878167-103878413(-)$1	1	229	236	20.9999
(((((((	chr12:118814598-118814946(+)$1	1	96	103	20.9999
..(((((	chr17:56409007-56409233(-)$1	1	108	115	20.9999
((((.((	chr17:7141366-7141612(-)$1	1	93	100	20.9999
((((.((	chr4:187353284-187353601(-)$1	1	23	30	20.9999
((.((((	chr19:41311182-41311421(+)$1	1	60	67	20.9999
....)).	chr6:158988442-158988760(+)$1	1	158	165	20.9999
...).))	chr11:396283-396542(+)$1	1	106	113	20.9999
(((((((	chr19:5690545-5690797(+)$1	1	199	206	20.9999
(((((((	chr8:144582375-144582637(-)$1	1	146	153	20.9999
)))))))	chr11:2400249-2400488(+)$1	1	203	210	20.9999
)).).))	chr8:101963096-101963399(-)$1	1	75	82	20.9999
.......	chr9:126030074-126030319(-)$1	1	227	234	20.9999
))).)))	chr8:145032508-145032810(-)$1	1	187	194	20.9999
.)))...	chr16:88725288-88725547(-)$1	1	240	247	20.9999
))))..)	chr11:126146316-126146599(+)$1	1	114	121	20.9999
))))..)	chr4:904301-904625(-)$1	1	279	286	20.9999
.(((...	chr9:126029877-126030122(-)$1	1	30	37	20.9999
((((.((	chr22:50912495-50912784(-)$1	1	209	216	20.9999
.(.(...	chr11:2412313-2412553(+)$1	1	193	200	20.9999
(((((((	chrX:153780483-153780766(+)$1	1	3	10	20.9999

#PSSM
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
U : 0.88	u : 0.11	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	

#score	923.9999999999999
#seq	44
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_transcript_m3_run2.nuc.txt

#NT
cgccgccgccgccgcc	chr10:28822284-28822598(+)$1	314	140	156	32.7916
ccgcgccuccgccgcc	chr19:344279-344587(-)$1	308	288	304	21.9583
CUGCGccgcccgcgcc	chrX:152953826-152954122(+)$1	296	18	34	20.1874
cgccgccgccgccgcc	chr16:16043361-16043650(+)$1	289	107	123	32.7916
CGGCGCUGCCGAGGCC	chr5:162864640-162864911(+)$1	271	5	21	21.1249
GGCCACCGCCGCCGCC	chr2:159313543-159313789(+)$1	246	2	18	25.3958
cgacgccgaccccgcc	chrX:48814668-48814900(-)$1	232	103	119	22.0624
CGACGGCGCCGGCGGC	chr19:11071574-11071881(+)$1	307	255	271	19.6666
Cgcggcggcggcggcg	chr2:71221729-71222057(-)$1	328	75	91	16.9583
CGCCGCCGCCGAAGGC	chr3:197476877-197477188(+)$1	311	11	27	21.9583
ccgcgccgccgccgcg	chr1:1284346-1284643(-)$1	297	180	196	21.4374
CGCCGCCGCCGCGGGC	chr3:194207396-194207674(-)$1	278	131	147	26.2291
cgcccgggccgccgcc	chr19:6424422-6424702(-)$1	280	18	34	23.6249
CGCCGGGGCCCAGGCC	chr7:148395849-148396119(+)$1	270	203	219	19.1458
CCCCGCGGCCCGCGCC	chr10:81107241-81107485(+)$1	244	134	150	21.8541
CGCCGCAGCCGCCGCU	chr16:89556833-89557063(-)$1	230	65	81	25.7083
cgcccccgccugcgcg	chr18:34408747-34409033(-)$1	286	23	39	18.5208
ggccggggccggggcc	chr4:79697534-79697795(+)$1	261	237	253	19.8749
CUCUGCCGCUGCCGCC	chr11:126138517-126138790(-)$1	273	75	91	21.3333
cgcggugggcggcgcc	chr3:128211650-128211983(+)$1	333	100	116	16.8541
cgccgcgcgccccgcc	chr10:17496087-17496356(-)$1	269	233	249	20.6041
GGCCGCGACCCCGGCC	chr21:44395128-44395397(+)$1	269	218	234	18.8333
ggccgcggcgggcggc	chr19:3094497-3094767(+)$1	270	53	69	18.1041
cgucuccgcccgcgcc	chr12:118498896-118499154(-)$1	258	137	153	19.4583
cgccgcggcggcggca	chr5:179718767-179719147(-)$1	380	72	88	20.7083
UGCCGCCCCCAGCGCC	chr18:42259060-42259282(-)$1	222	81	97	20.0833
AGUCGGUGCCGCCGCC	chr17:27717339-27717600(+)$1	261	106	122	19.6666
cgccgccgccgccgcc	chr1:32403510-32403754(-)$1	244	72	88	32.7916
cgccgggggcgcggcc	chr16:2059381-2059646(-)$1	265	130	146	21.2291
GGCCGCCUCCAGCGCC	chr1:202927217-202927471(-)$1	254	90	106	20.1874
CGACGCGCCCGCGGAC	chr22:21213439-21213678(+)$1	239	63	79	17.2708
cgccgcugccgccgcc	chr9:126030704-126030947(-)$1	243	66	82	30.1874
UGCCGCCGCCGCCGCC	chr16:12009507-12009808(-)$1	301	24	40	29.4583
CGCCGCAGCCUCCGCC	chr2:28974730-28975055(+)$1	325	193	209	26.5416
cggcgcugccccggcc	chr20:57466466-57466739(+)$1	273	224	240	21.4374
GGCUGCCGCAGCCGCC	chr19:49588714-49588945(+)$1	231	120	136	21.9583
cgccgccucggccgcc	chr19:1205890-1206151(+)$1	261	129	145	25.7083
cgcgcacgccgcugcc	chr19:1652418-1652676(-)$1	258	155	171	17.2708
GGCCGCCACAGCCGCC	chr9:35072332-35072574(-)$1	242	188	204	22.3749
CCCCGCCCGCGGCGCC	chr17:78234822-78235073(+)$1	251	52	68	19.0416
CGCGGUCCCUGCCGCC	chr1:235291956-235292194(-)$1	238	120	136	18.3124
cgccgcagccgccgcc	chr9:126030529-126030846(-)$1	317	22	38	30.0833
cgccgccgccgccgcc	chr6:20402475-20402738(+)$1	263	119	135	32.7916
cgccgccgcugccgcc	chr14:105886166-105886469(+)$1	303	286	302	29.4583
CUCCGCCGCUGCGGCC	chr3:13461629-13461879(-)$1	250	215	231	22.9999
cgccgccgccgccgcc	chr10:977314-977567(-)$1	253	12	28	32.7916
UGCCGCCGCCGCCUCC	chr2:176046280-176046531(-)$1	251	125	141	24.6666

#otherMatches

#Struct PSSM
GG:eeeeemmmmeeee	chr22:19711434-19711689(+)$1	255	131	147	19.4583
2ccc]ccc]ddddddd	chr10:28822284-28822598(+)$1	314	140	156	32.7916
BB}A}EEEEE}FFFFF	chr19:344279-344587(-)$1	308	288	304	21.9583
""ddddnnnnndddd4	chrX:152953826-152954122(+)$1	296	18	34	20.1874
pcccdddd22eeeeeg	chr16:16043361-16043650(+)$1	289	107	123	32.7916
ggmmmmgggggggBBH	chr5:162864640-162864911(+)$1	271	5	21	21.1249
DDDD:hhhhhhhhooo	chr2:159313543-159313789(+)$1	246	2	18	25.3958
c[eeeee+++++++++	chrX:48814668-48814900(-)$1	232	103	119	22.0624
rrrggggggg:ggggg	chr19:11071574-11071881(+)$1	307	255	271	19.6666
ccc22a]dddd22ggg	chr2:71221729-71222057(-)$1	328	75	91	16.9583
KDDDDEEEEEMMMMDD	chr3:197476877-197477188(+)$1	311	11	27	21.9583
ffffffa[bb[bb[bb	chr1:1284346-1284643(-)$1	297	180	196	21.4374
ffffffccc[dddd!!	chr3:194207396-194207674(-)$1	278	131	147	26.2291
JJJJJJJJJJJJJJJJ	chr19:6424422-6424702(-)$1	280	18	34	23.6249
iiii[bb[cccppppp	chr7:148395849-148396119(+)$1	270	203	219	19.1458
55ggggggga]eeeee	chr10:81107241-81107485(+)$1	244	134	150	21.8541
[ccc[ddddmmmmddd	chr16:89556833-89557063(-)$1	230	65	81	25.7083
===========[a[bb	chr18:34408747-34409033(-)$1	286	23	39	18.5208
cccbb]gggggggacc	chr4:79697534-79697795(+)$1	261	237	253	19.8749
dd55555dddd]eeee	chr11:126138517-126138790(-)$1	273	75	91	21.3333
c]dddd666666iiii	chr3:128211650-128211983(+)$1	333	100	116	16.8541
FFFFFF}DDDDEEEEE	chr10:17496087-17496356(-)$1	269	233	249	20.6041
]ffffff]eeeeeiii	chr21:44395128-44395397(+)$1	269	218	234	18.8333
[ccc[dddd[ammmma	chr19:3094497-3094767(+)$1	270	53	69	18.1041
eeqqqqqqqqeeeee:	chr12:118498896-118499154(-)$1	258	137	153	19.4583
e]adddd]dddd22ee	chr5:179718767-179719147(-)$1	380	72	88	20.7083
2eeeeeDDDD}CCC~~	chr18:42259060-42259282(-)$1	222	81	97	20.0833
lccc22ggggggg:cc	chr17:27717339-27717600(+)$1	261	106	122	19.6666
bb]dddd]a]ccc]a]	chr1:32403510-32403754(-)$1	244	72	88	32.7916
HHHHHHHBBFFFFFFh	chr16:2059381-2059646(-)$1	265	130	146	21.2291
bb"""eeeee[dddd[	chr1:202927217-202927471(-)$1	254	90	106	20.1874
ppppppeeeee:DDDD	chr22:21213439-21213678(+)$1	239	63	79	17.2708
DDDKKJJJJJJJJJJJ	chr9:126030704-126030947(-)$1	243	66	82	30.1874
JJJJJJJJJJJJJJJJ	chr16:12009507-12009808(-)$1	301	24	40	29.4583
eeebbDDDDEEEEEEE	chr2:28974730-28975055(+)$1	325	193	209	26.5416
]eeeee]bb22ddddd	chr20:57466466-57466739(+)$1	273	224	240	21.4374
EEEYYDDDDYYCCC}D	chr19:49588714-49588945(+)$1	231	120	136	21.9583
meeeee333ccc22ee	chr19:1205890-1206151(+)$1	261	129	145	25.7083
dddbb]==========	chr19:1652418-1652676(-)$1	258	155	171	17.2708
ccc[bbmmmmbb]ccc	chr9:35072332-35072574(-)$1	242	188	204	22.3749
b"""ffffff[bb[ff	chr17:78234822-78235073(+)$1	251	52	68	19.0416
eeeeeemmmmeeeeeg	chr1:235291956-235292194(-)$1	238	120	136	18.3124
HHHHHH{JJJJJJJJJ	chr9:126030529-126030846(-)$1	317	22	38	30.0833
bb22bb]ffffff]bb	chr6:20402475-20402738(+)$1	263	119	135	32.7916
JJJJJJJJJJJJJJJJ	chr14:105886166-105886469(+)$1	303	286	302	29.4583
ffHHHHHHHHYYDDDD	chr3:13461629-13461879(-)$1	250	215	231	22.9999
==========[eeeee	chr10:977314-977567(-)$1	253	12	28	32.7916
eeee[dddd[ddddpp	chr2:176046280-176046531(-)$1	251	125	141	24.6666

#DB
)).(((((....))))	chr22:19711434-19711689(+)$1	1	131	147	19.4583
.))).))).)))))))	chr10:28822284-28822598(+)$1	1	140	156	32.7916
)).).))))).)))))	chr19:344279-344587(-)$1	1	288	304	21.9583
..((((.....)))).	chrX:152953826-152954122(+)$1	1	18	34	20.1874
.)))))))..))))))	chr16:16043361-16043650(+)$1	1	107	123	32.7916
((....)))))))(((	chr5:162864640-162864911(+)$1	1	5	21	21.1249
((((.((((((((...	chr2:159313543-159313789(+)$1	1	2	18	25.3958
(.(((((.........	chrX:48814668-48814900(-)$1	1	103	119	22.0624
...))))))).(((((	chr19:11071574-11071881(+)$1	1	255	271	19.6666
)))..).))))..)))	chr2:71221729-71222057(-)$1	1	75	91	16.9583
.(((((((((....((	chr3:197476877-197477188(+)$1	1	11	27	21.9583
))))))(.((.((.((	chr1:1284346-1284643(-)$1	1	180	196	21.4374
(((((((((.((((..	chr3:194207396-194207674(-)$1	1	131	147	26.2291
((((((((((((((((	chr19:6424422-6424702(-)$1	1	18	34	23.6249
((((.((.(((.....	chr7:148395849-148396119(+)$1	1	203	219	19.1458
..)))))))).)))))	chr10:81107241-81107485(+)$1	1	134	150	21.8541
.(((.((((....)))	chr16:89556833-89557063(-)$1	1	65	81	25.7083
(((((((((((.(.((	chr18:34408747-34409033(-)$1	1	23	39	18.5208
))))).))))))))))	chr4:79697534-79697795(+)$1	1	237	253	19.8749
)).....)))).))))	chr11:126138517-126138790(-)$1	1	75	91	21.3333
).))))......))))	chr3:128211650-128211983(+)$1	1	100	116	16.8541
)))))).)))))))))	chr10:17496087-17496356(-)$1	1	233	249	20.6041
.)))))).)))))(((	chr21:44395128-44395397(+)$1	1	218	234	18.8333
.(((.((((.(....)	chr19:3094497-3094767(+)$1	1	53	69	18.1041
((........))))).	chr12:118498896-118499154(-)$1	1	137	153	19.4583
).))))).))))..))	chr5:179718767-179719147(-)$1	1	72	88	20.7083
.))))))))).)))..	chr18:42259060-42259282(-)$1	1	81	97	20.0833
.)))..))))))).((	chr17:27717339-27717600(+)$1	1	106	122	19.6666
)).)))).).))).).	chr1:32403510-32403754(-)$1	1	72	88	32.7916
)))))))))))))))(	chr16:2059381-2059646(-)$1	1	130	146	21.2291
((...(((((.((((.	chr1:202927217-202927471(-)$1	1	90	106	20.1874
......))))).((((	chr22:21213439-21213678(+)$1	1	63	79	17.2708
(((..(((((((((((	chr9:126030704-126030947(-)$1	1	66	82	30.1874
((((((((((((((((	chr16:12009507-12009808(-)$1	1	24	40	29.4583
)))))(((((((((((	chr2:28974730-28975055(+)$1	1	193	209	26.5416
.))))).))..)))))	chr20:57466466-57466739(+)$1	1	224	240	21.4374
)))..))))..))).)	chr19:49588714-49588945(+)$1	1	120	136	21.9583
.)))))...)))..))	chr19:1205890-1206151(+)$1	1	129	145	25.7083
))))).))))))))))	chr19:1652418-1652676(-)$1	1	155	171	17.2708
(((.((....)).)))	chr9:35072332-35072574(-)$1	1	188	204	22.3749
(...((((((.((.((	chr17:78234822-78235073(+)$1	1	52	68	19.0416
)(((((....)))))(	chr1:235291956-235292194(-)$1	1	120	136	18.3124
((((((.(((((((((	chr9:126030529-126030846(-)$1	1	22	38	30.0833
))..)).)))))).))	chr6:20402475-20402738(+)$1	1	119	135	32.7916
))))))))))))))))	chr14:105886166-105886469(+)$1	1	286	302	29.4583
))))))))))..))))	chr3:13461629-13461879(-)$1	1	215	231	22.9999
((((((((((.(((((	chr10:977314-977567(-)$1	1	12	28	32.7916
((((.((((.((((..	chr2:176046280-176046531(-)$1	1	125	141	24.6666

#PSSM
c : 0.43	C : 0.31	G : 0.10	U : 0.08	g : 0.04	A : 0.02	
g : 0.45	G : 0.39	U : 0.06	c : 0.04	C : 0.04	
c : 0.39	C : 0.37	A : 0.06	g : 0.06	G : 0.04	a : 0.02	u : 0.02	U : 0.02	
C : 0.43	c : 0.43	g : 0.06	U : 0.04	G : 0.02	
G : 0.47	g : 0.41	c : 0.06	A : 0.02	u : 0.02	
c : 0.41	C : 0.37	G : 0.08	g : 0.06	u : 0.02	a : 0.02	U : 0.02	
C : 0.31	c : 0.29	g : 0.16	G : 0.08	U : 0.04	A : 0.04	u : 0.04	a : 0.02	
g : 0.45	G : 0.33	C : 0.08	u : 0.04	A : 0.04	c : 0.02	U : 0.02	
C : 0.45	c : 0.43	g : 0.06	a : 0.02	G : 0.02	
c : 0.41	C : 0.35	U : 0.08	g : 0.08	A : 0.04	u : 0.02	
g : 0.39	G : 0.35	c : 0.10	C : 0.06	A : 0.04	u : 0.02	U : 0.02	
c : 0.39	C : 0.31	g : 0.12	G : 0.10	A : 0.06	
c : 0.39	C : 0.33	G : 0.12	g : 0.10	A : 0.02	u : 0.02	
g : 0.52	G : 0.45	U : 0.02	
c : 0.49	C : 0.39	G : 0.06	g : 0.02	A : 0.02	
C : 0.45	c : 0.43	g : 0.06	U : 0.02	a : 0.02	

#score	1102.9583333333333
#seq	48
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF832JDM_UTP3_transcript_m1_run1.nuc.txt

#NT
CCCCAGAGGUUCUUCCCAUCUCUCCAGGCUGAUGUGUGGGAACUCGAGGAAAUAAAUCUCCAGUGGGAGACGGAGGGGUGGCCAGGGAAACGGGGCGCUGCAGGAAUAAAGACGAGCCAGCACAGCCAGCUCAUGUGUAACGGCUUUGUGGAGCUGUCAAGGCCUGGUCUCUG	chr17:42993785-42993991(-)$1	206	1	174	519.0000
CCCCAGAGGUUCUUCCCAUCUCUCCAGGCUGAUGUGUGGGAACUCGAGGAAAUAAAUCUCCAGUGGGAGACGGAGGGGUGGCCAGGGAAACGGGGCGCUGCAGGAAUAAAGACGAGCCAGCACAGCCAGCUCAUGUGUAACGGCUUUGUGGAGCUGUCAAGGCCUGGUCUCUG	chr17:42993801-42994008(-)$1	207	18	191	519.0000

#otherMatches

#Struct PSSM
bddddffffff[dddda"""bb[ccc[bbmmmmbb]cccbb4444a]dddd333ffffff333dddd]bb]ccc]ddddDDDD:::::::a!!cccccc[bb[bb(((((((((dddd[eeeeerrrrrrrrreeeee333ddddbb]bb]ccc]ccc22a:ddddffffffn	chr17:42993791-42994001(-)$1	210	11	184	519.0000
BGGGGGGG:EEEEE{JJJJJJJJJJ:::bb!!bb[bbmmmmbb]bb]bb:::::::eeeeemmmmeeeee:JJJJJJJJJJZZZEEEEEbb[dddd!!bbccc''''''''ddddccc[eeeeerrrrrrrrreeeee333ccc]dddd4444ccc]bb22dddd]bbGGGGG	chr17:42993785-42993991(-)$1	206	1	174	519.0000
bddddffffff[dddda"""bb[ccc[bbmmmmbb]cccbb4444a]dddd333ffffff333dddd]bb]ccc]dddd666666ffffff::cccccc[bb[bb(((((((((dddd[eeeeerrrrrrrrreeeee333ddddbb]bb]ccc]ccc::::ddddffffffn	chr17:42993801-42994008(-)$1	207	18	191	519.0000

#DB
(((((((((((.(((((...((.(((.((....)).)))))....).))))...))))))...)))).)).))).))))((((.......(..((((((.((.((.........((((.(((((.........)))))...)))))).)).))).)))..).((((((((((.	chr17:42993791-42994001(-)$1	1	11	184	519.0000
((((((((.(((((.((((((((((...((..((.((....)).)).)).......(((((....))))).))))))))))...)))))((.((((..(((((........(((((((.(((((.........)))))...))).))))....))).))..)))).)))))))	chr17:42993785-42993991(-)$1	1	1	174	519.0000
(((((((((((.(((((...((.(((.((....)).)))))....).))))...))))))...)))).)).))).))))......))))))..((((((.((.((.........((((.(((((.........)))))...)))))).)).))).)))....((((((((((.	chr17:42993801-42994008(-)$1	1	18	191	519.0000

#PSSM
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	

#score	1557.0
#seq	3
#width	173
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_UTR_m3_run1.nuc.txt

#NT
UUUGUUCUC	chr9:132869702-132870029(+)$1	327	46	55	12.6363
CUUUCUCUU	chr17:75212392-75212689(+)$1	297	209	218	12.6363
UUUUCUUUC	chr17:4594451-4594777(-)$1	326	25	34	18.1818
UUUUCCAUC	chr11:118962962-118963189(+)$1	227	140	149	12.5454
UUUUUUCUG	chr6:36567978-36568285(+)$1	307	142	151	14.0000
UUGUCUCUC	chr6:99851462-99851825(-)$1	363	174	183	14.6363
UUUUCUCUA	chr5:140048492-140048747(+)$1	255	151	160	16.2727
UUUUAUCUC	chr7:151891173-151891451(-)$1	278	225	234	16.1818
UUUUCUCUG	chr11:59577132-59577429(-)$1	297	134	143	16.1818
UUUUCUCUU	chr10:22616935-22617210(+)$1	275	112	121	16.7272
UUUGUUCUC	chr1:249150009-249150267(-)$1	258	106	115	12.6363
UUGUCUGUC	chr19:1271916-1272187(+)$1	271	48	57	12.5454
AUUUUUCUC	chr14:21462906-21463292(+)$1	386	243	252	12.8181
UUUUCUUUC	chr2:198284903-198285207(-)$1	304	240	249	18.1818
UUUCCUUUC	chr1:28384362-28384648(-)$1	286	262	271	14.0000
UUUUCUCUC	chr13:21714787-21715057(+)$1	270	220	229	19.0909
UCUUCUCUU	chr1:161180435-161180704(+)$1	269	119	128	12.0000
AUUUCUGUC	chr17:41107881-41108161(-)$1	280	225	234	12.9090
UUUUAUGUC	chr8:95888307-95888627(+)$1	320	1	10	14.0909
UUUUUUCCC	chr3:156869857-156870078(-)$1	221	28	37	12.0909
UUUCCUUUC	chr17:57741234-57741541(+)$1	307	214	223	14.0000
UUUUUUCUC	chr15:45008475-45008765(+)$1	290	25	34	16.9090
CUUUCUCUC	chr16:28844595-28844860(+)$1	265	151	160	15.0000
UUUUUUUUC	chr11:85374305-85374557(-)$1	252	82	91	16.0000
UUUCCUCUC	chr12:124144498-124144792(+)$1	294	194	203	14.9090
UGUUCUCUU	chr3:50137404-50137695(+)$1	291	109	118	12.0000
UUUUCUUUA	chr1:54395422-54395677(-)$1	255	100	109	15.3636
UUUUCCCUC	chr13:115002133-115002403(+)$1	270	128	137	14.7272
UUUUCUUUC	chr11:62651990-62652247(+)$1	257	101	110	18.1818
UUUUCUCUA	chr1:160249648-160249965(-)$1	317	292	301	16.2727
UUUUCUUUU	chr12:57504864-57505165(-)$1	301	117	126	15.8181
UUGUCUUUC	chr5:179044934-179045259(-)$1	325	187	196	13.7272
UUUUCUCUC	chr14:89029880-89030159(+)$1	279	103	112	19.0909
UUUUAUCUU	chr3:125188092-125188398(-)$1	306	15	24	13.8181
GUUUCUCUC	chr6:31727002-31727338(+)$1	336	198	207	14.8181
CUUUCUCUU	chr12:54801312-54801574(-)$1	262	79	88	12.6363
UUUUCUCUU	chr5:137903205-137903454(-)$1	249	183	192	16.7272
UUUUUACUC	chr12:69980447-69980707(+)$1	260	73	82	12.3636
uuuuuuuuu	chr19:36708977-36709239(+)$1	262	18	27	13.6363
UUUUUUUUC	chr14:23793680-23793925(+)$1	245	72	81	16.0000
UUUUCUAUA	chr12:48179135-48179433(-)$1	298	169	178	14.0909
UUUUUUUUC	chr3:141634701-141634993(+)$1	292	239	248	16.0000
UUUUCUUUG	chr7:148512454-148512747(-)$1	293	89	98	15.2727
UUUUCUAUU	chr11:61571939-61572198(-)$1	259	7	16	14.5454
UUUUCUUUC	chr1:228328800-228329028(+)$1	228	83	92	18.1818
UUUUUUUUC	chr4:103730687-103731008(-)$1	321	130	139	16.0000
UUUUUUGUC	chr4:83276239-83276528(-)$1	289	92	101	14.8181
UUUUCCCUC	chr1:153719715-153719988(+)$1	273	20	29	14.7272
UUUUCUUUC	chr11:62652047-62652308(+)$1	261	44	53	18.1818
UUUUCUUUA	chr15:101826999-101827260(-)$1	261	193	202	15.3636
UUUUAUCUG	chr4:142145710-142145964(+)$1	254	2	11	13.2727
uuuuauauc	chr2:148730872-148731166(-)$1	294	19	28	14.0000
UUUACUGUC	chr2:135677324-135677629(+)$1	305	157	166	12.6363
AUUUCUCUC	chr17:46919103-46919415(+)$1	312	21	30	15.0000

#otherMatches

#Struct PSSM
:::::::::	chr17:27047516-27047730(+)$1	214	187	196	18.1818
hhhhh$$$$	chr9:132869702-132870029(+)$1	327	46	55	12.6363
hhh333bb2	chr17:75212392-75212689(+)$1	297	209	218	12.6363
!!ddddppp	chr17:4594451-4594777(-)$1	326	25	34	18.1818
gggggg:BB	chr11:118962962-118963189(+)$1	227	140	149	12.5454
ddd::::CC	chr6:36567978-36568285(+)$1	307	142	151	14.0000
FFFFNNNNN	chr6:99851462-99851825(-)$1	363	174	183	14.6363
cc[ccc"""	chr5:140048492-140048747(+)$1	255	151	160	16.2727
::::::III	chr7:151891173-151891451(-)$1	278	225	234	16.1818
qqqqqqqqc	chr11:59577132-59577429(-)$1	297	134	143	16.1818
::::fffff	chr10:22616935-22617210(+)$1	275	112	121	16.7272
:::::::::	chr1:249150009-249150267(-)$1	258	106	115	12.6363
eee!!dddd	chr19:1271916-1272187(+)$1	271	48	57	12.5454
g::::::::	chr14:21462906-21463292(+)$1	386	243	252	12.8181
===777777	chr2:198284903-198285207(-)$1	304	240	249	18.1818
===22dddd	chr1:28384362-28384648(-)$1	286	262	271	14.0000
dddffffff	chr13:21714787-21715057(+)$1	270	220	229	19.0909
c22bb5555	chr1:161180435-161180704(+)$1	269	119	128	12.0000
"eeeeemmm	chr17:41107881-41108161(-)$1	280	225	234	12.9090
:::::::FF	chr8:95888307-95888627(+)$1	320	1	10	14.0909
hhhhh::::	chr3:156869857-156870078(-)$1	221	28	37	12.0909
fff$$$$$h	chr17:57741234-57741541(+)$1	307	214	223	14.0000
+++++++++	chr15:45008475-45008765(+)$1	290	25	34	16.9090
eeecccnnn	chr16:28844595-28844860(+)$1	265	151	160	15.0000
:::::dddd	chr11:85374305-85374557(-)$1	252	82	91	16.0000
IIIIIIDDD	chr12:124144498-124144792(+)$1	294	194	203	14.9090
77hhhhhhh	chr3:50137404-50137695(+)$1	291	109	118	12.0000
eee::::::	chr1:54395422-54395677(-)$1	255	100	109	15.3636
fffffoooo	chr13:115002133-115002403(+)$1	270	128	137	14.7272
d]eeeee:D	chr11:62651990-62652247(+)$1	257	101	110	18.1818
~~~EEEEE}	chr1:160249648-160249965(-)$1	317	292	301	16.2727
=========	chr12:57504864-57505165(-)$1	301	117	126	15.8181
qqccc22cc	chr5:179044934-179045259(-)$1	325	187	196	13.7272
f[dddd&&&	chr14:89029880-89030159(+)$1	279	103	112	19.0909
DDDD::a[f	chr3:125188092-125188398(-)$1	306	15	24	13.8181
iiiiiiiim	chr6:31727002-31727338(+)$1	336	198	207	14.8181
:::::::hh	chr12:54801312-54801574(-)$1	262	79	88	12.6363
xxxxfffff	chr5:137903205-137903454(-)$1	249	183	192	16.7272
22bb]ccc]	chr12:69980447-69980707(+)$1	260	73	82	12.3636
fffyyyyyy	chr19:36708977-36709239(+)$1	262	18	27	13.6363
ttttttttt	chr14:23793680-23793925(+)$1	245	72	81	16.0000
eeee&&&&&	chr12:48179135-48179433(-)$1	298	169	178	14.0909
:::::::::	chr3:141634701-141634993(+)$1	292	239	248	16.0000
hh:::::cc	chr7:148512454-148512747(-)$1	293	89	98	15.2727
CCCKKIIII	chr11:61571939-61572198(-)$1	259	7	16	14.5454
ee[ccc[bb	chr1:228328800-228329028(+)$1	228	83	92	18.1818
ooooooddd	chr4:103730687-103731008(-)$1	321	130	139	16.0000
::::dddd[	chr4:83276239-83276528(-)$1	289	92	101	14.8181
"""dddd[b	chr1:153719715-153719988(+)$1	273	20	29	14.7272
f&&&&&&&f	chr11:62652047-62652308(+)$1	261	44	53	18.1818
YYA}DDDD}	chr15:101826999-101827260(-)$1	261	193	202	15.3636
:FFFFFFKK	chr4:142145710-142145964(+)$1	254	2	11	13.2727
HHHHHHHMM	chr2:148730872-148731166(-)$1	294	19	28	14.0000
ffffff[bb	chr2:135677324-135677629(+)$1	305	157	166	12.6363
G:::ccc[d	chr17:46919103-46919415(+)$1	312	21	30	15.0000

#DB
.........	chr17:27047516-27047730(+)$1	1	187	196	18.1818
(((((....	chr9:132869702-132870029(+)$1	1	46	55	12.6363
)))...)).	chr17:75212392-75212689(+)$1	1	209	218	12.6363
..((((...	chr17:4594451-4594777(-)$1	1	25	34	18.1818
)))))).))	chr11:118962962-118963189(+)$1	1	140	149	12.5454
)))....))	chr6:36567978-36568285(+)$1	1	142	151	14.0000
((((.....	chr6:99851462-99851825(-)$1	1	174	183	14.6363
((.(((...	chr5:140048492-140048747(+)$1	1	151	160	16.2727
......)))	chr7:151891173-151891451(-)$1	1	225	234	16.1818
........)	chr11:59577132-59577429(-)$1	1	134	143	16.1818
....(((((	chr10:22616935-22617210(+)$1	1	112	121	16.7272
.........	chr1:249150009-249150267(-)$1	1	106	115	12.6363
(((..((((	chr19:1271916-1272187(+)$1	1	48	57	12.5454
)........	chr14:21462906-21463292(+)$1	1	243	252	12.8181
)))......	chr2:198284903-198285207(-)$1	1	240	249	18.1818
)))..))))	chr1:28384362-28384648(-)$1	1	262	271	14.0000
)))))))))	chr13:21714787-21715057(+)$1	1	220	229	19.0909
)..))....	chr1:161180435-161180704(+)$1	1	119	128	12.0000
.(((((...	chr17:41107881-41108161(-)$1	1	225	234	12.9090
.......((	chr8:95888307-95888627(+)$1	1	1	10	14.0909
)))))....	chr3:156869857-156870078(-)$1	1	28	37	12.0909
(((.....(	chr17:57741234-57741541(+)$1	1	214	223	14.0000
.........	chr15:45008475-45008765(+)$1	1	25	34	16.9090
((((((...	chr16:28844595-28844860(+)$1	1	151	160	15.0000
.....((((	chr11:85374305-85374557(-)$1	1	82	91	16.0000
)))))))))	chr12:124144498-124144792(+)$1	1	194	203	14.9090
..)))))))	chr3:50137404-50137695(+)$1	1	109	118	12.0000
)))......	chr1:54395422-54395677(-)$1	1	100	109	15.3636
(((((....	chr13:115002133-115002403(+)$1	1	128	137	14.7272
).))))).(	chr11:62651990-62652247(+)$1	1	101	110	18.1818
...))))).	chr1:160249648-160249965(-)$1	1	292	301	16.2727
)))))))))	chr12:57504864-57505165(-)$1	1	117	126	15.8181
..)))..))	chr5:179044934-179045259(-)$1	1	187	196	13.7272
(.((((...	chr14:89029880-89030159(+)$1	1	103	112	19.0909
((((..(.(	chr3:125188092-125188398(-)$1	1	15	24	13.8181
((((((((.	chr6:31727002-31727338(+)$1	1	198	207	14.8181
.......((	chr12:54801312-54801574(-)$1	1	79	88	12.6363
....)))))	chr5:137903205-137903454(-)$1	1	183	192	16.7272
..)).))).	chr12:69980447-69980707(+)$1	1	73	82	12.3636
(((......	chr19:36708977-36709239(+)$1	1	18	27	13.6363
.........	chr14:23793680-23793925(+)$1	1	72	81	16.0000
((((.....	chr12:48179135-48179433(-)$1	1	169	178	14.0909
.........	chr3:141634701-141634993(+)$1	1	239	248	16.0000
)).....((	chr7:148512454-148512747(-)$1	1	89	98	15.2727
(((..((((	chr11:61571939-61572198(-)$1	1	7	16	14.5454
((.(((.((	chr1:228328800-228329028(+)$1	1	83	92	18.1818
......)))	chr4:103730687-103731008(-)$1	1	130	139	16.0000
....((((.	chr4:83276239-83276528(-)$1	1	92	101	14.8181
...((((.(	chr1:153719715-153719988(+)$1	1	20	29	14.7272
(.......(	chr11:62652047-62652308(+)$1	1	44	53	18.1818
..).)))).	chr15:101826999-101827260(-)$1	1	193	202	15.3636
.((((((..	chr4:142145710-142145964(+)$1	1	2	11	13.2727
(((((((..	chr2:148730872-148731166(-)$1	1	19	28	14.0000
((((((.((	chr2:135677324-135677629(+)$1	1	157	166	12.6363
(...(((.(	chr17:46919103-46919415(+)$1	1	21	30	15.0000

#PSSM
U : 0.83	C : 0.05	A : 0.05	u : 0.03	G : 0.01	
U : 0.92	u : 0.03	C : 0.01	G : 0.01	
U : 0.90	G : 0.05	u : 0.03	
U : 0.85	C : 0.05	G : 0.03	u : 0.03	A : 0.01	
C : 0.67	U : 0.21	A : 0.07	u : 0.01	a : 0.01	
U : 0.89	C : 0.05	u : 0.03	A : 0.01	
C : 0.50	U : 0.30	G : 0.09	A : 0.05	u : 0.01	a : 0.01	
U : 0.94	u : 0.03	C : 0.01	
C : 0.63	U : 0.16	A : 0.09	G : 0.07	u : 0.01	c : 0.01	

#score	822.6363636363642
#seq	55
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_CDS_m1_run1.nuc.txt

#NT
GGUG	chr16:202762-203043(+)$1	281	240	244	11.9999
GGUG	chr2:98262431-98262750(+)$1	319	269	273	11.9999
GGUG	chr1:36106924-36107221(-)$1	297	108	112	11.9999
GGUG	chrX:119005747-119006053(+)$1	306	280	284	11.9999
GGUG	chr1:19923404-19923696(+)$1	292	125	129	11.9999
GGUG	chr19:49999594-49999824(+)$1	230	133	137	11.9999
GGUG	chr1:45984588-45984827(-)$1	239	37	41	11.9999
GGUG	chr17:56429328-56429653(-)$1	325	67	71	11.9999
GGUG	chr12:6976600-6976847(+)$1	247	228	232	11.9999
GGUG	chr11:17099065-17099318(-)$1	253	71	75	11.9999
GGUG	chr20:30193032-30193344(+)$1	312	236	240	11.9999
GGUG	chr11:64084824-64085089(-)$1	265	135	139	11.9999
GGUG	chr12:57039581-57039850(-)$1	269	123	127	11.9999
GGUG	chr11:63742045-63742316(+)$1	271	89	93	11.9999
GGUG	chr15:40331192-40331460(-)$1	268	15	19	11.9999
GGUG	chr6:27861155-27861405(+)$1	250	216	220	11.9999
GGUG	chr9:113018606-113018926(-)$1	320	151	155	11.9999
GGUG	chr6:26124309-26124563(+)$1	254	130	134	11.9999
GGUG	chrX:77154866-77155152(+)$1	286	223	227	11.9999
GGUG	chr10:7830042-7830320(+)$1	278	47	51	11.9999
GGUG	chr8:74205736-74205964(-)$1	228	123	127	11.9999
GGUG	chr7:22862287-22862557(-)$1	270	161	165	11.9999
GGUG	chr12:6643913-6644128(+)$1	215	93	97	11.9999
GGUG	chr16:18800334-18800541(-)$1	207	0	4	11.9999
GGUG	chr1:110950106-110950351(-)$1	245	52	56	11.9999
GGUG	chr11:5290936-5291159(-)$1	223	41	45	11.9999
GGUG	chr11:32605279-32605544(+)$1	265	50	54	11.9999
GGUG	chr17:37009849-37010082(-)$1	233	43	47	11.9999
GGUG	chr17:26902392-26902664(-)$1	272	65	69	11.9999
GGUG	chr6:26104073-26104343(+)$1	270	141	145	11.9999
GGUG	chr1:228645377-228645637(-)$1	260	140	144	11.9999
GGUG	chr12:56510477-56510683(+)$1	206	105	109	11.9999
GGUG	chr19:8386336-8386554(+)$1	218	2	6	11.9999
GGUG	chr10:75541713-75542002(+)$1	289	3	7	11.9999
GGUG	chr6:26204757-26205049(+)$1	292	103	107	11.9999
GGUG	chr3:197677705-197677948(+)$1	243	48	52	11.9999
GGUG	chr5:140026967-140027302(-)$1	335	234	238	11.9999
GGUG	chr19:18684002-18684228(+)$1	226	25	29	11.9999
GGUG	chr6:27100350-27100637(-)$1	287	161	165	11.9999
GGUG	chr5:177019109-177019432(+)$1	323	95	99	11.9999
GGUG	chr15:66795738-66795962(-)$1	224	118	122	11.9999
GGUG	chr5:81573552-81573772(-)$1	220	22	26	11.9999
GGUG	chr5:68462855-68463201(+)$1	346	157	161	11.9999
GGUG	chr6:27835150-27835448(-)$1	298	11	15	11.9999
GGUG	chr1:149858072-149858325(-)$1	253	57	61	11.9999
GGUG	chr11:5275536-5275810(-)$1	274	174	178	11.9999
GGUG	chr11:118272300-118272522(+)$1	222	30	34	11.9999
GGUG	chr7:10979563-10979855(-)$1	292	66	70	11.9999
GGUG	chr12:6645559-6645798(+)$1	239	28	32	11.9999
GGUG	chr11:5290928-5291136(-)$1	208	18	22	11.9999
GGUG	chr15:64385842-64386171(-)$1	329	160	164	11.9999
GGUG	chr11:5291012-5291270(-)$1	258	152	156	11.9999
ggug	chr12:8088512-8088867(-)$1	355	0	4	11.9999
GGUG	chrX:153060068-153060309(+)$1	241	190	194	11.9999
GGUG	chr11:8704648-8704852(+)$1	204	186	190	11.9999
GGUG	chr19:572492-572804(+)$1	312	208	212	11.9999
GGUG	chr12:49663147-49663376(+)$1	229	30	34	11.9999
GGUG	chr11:67351833-67352041(+)$1	208	159	163	11.9999
GGUG	chr11:118272322-118272533(+)$1	211	8	12	11.9999
GGUG	chr15:45003618-45003913(+)$1	295	19	23	11.9999
GGUG	chr11:5290985-5291212(-)$1	227	94	98	11.9999
GGUG	chr12:49524980-49525274(-)$1	294	148	152	11.9999
GGUG	chr11:5290786-5291006(-)$1	220	11	15	11.9999
GGUG	chr1:33502293-33502576(-)$1	283	121	125	11.9999
GGUG	chr1:45478473-45478722(+)$1	249	185	189	11.9999
GGUG	chr1:205718997-205719220(-)$1	223	42	46	11.9999
GGUG	chr12:57066704-57066950(-)$1	246	27	31	11.9999
GGUG	chr8:125551267-125551581(+)$1	314	204	208	11.9999
GGUG	chr12:112846323-112846555(-)$1	232	55	59	11.9999
GGUG	chr2:47403478-47403739(-)$1	261	52	56	11.9999
GGUG	chrX:55052282-55052549(-)$1	267	15	19	11.9999
GGUG	chr6:75953335-75953601(-)$1	266	108	112	11.9999
GGUG	chr11:67351841-67352102(+)$1	261	151	155	11.9999
GGUG	chr6:26021825-26022085(+)$1	260	0	4	11.9999
GGUG	chr1:110950151-110950415(-)$1	264	116	120	11.9999
GGUG	chr12:49523373-49523606(-)$1	233	134	138	11.9999
GGUG	chr11:8704240-8704464(+)$1	224	126	130	11.9999
GGUG	chr12:49658768-49659070(+)$1	302	198	202	11.9999
GGUG	chr3:40498729-40498955(+)$1	226	22	26	11.9999
GGUG	chr6:31701904-31702140(-)$1	236	55	59	11.9999
GGUG	chr16:18800285-18800534(-)$1	249	36	40	11.9999
GGUG	chr5:81574037-81574242(-)$1	205	37	41	11.9999
GGUG	chr6:27775504-27775784(-)$1	280	153	157	11.9999
GGUG	chr6:26285544-26285845(-)$1	301	136	140	11.9999
GGUG	chr12:6976647-6976905(+)$1	258	181	185	11.9999
GGUG	chr19:49999624-49999828(+)$1	204	103	107	11.9999
GGUG	chr8:126010673-126010976(+)$1	303	173	177	11.9999

#otherMatches

#Struct PSSM
ffdd	chr20:60962276-60962507(+)$1	231	5	9	11.9999
GGGG	chr16:202762-203043(+)$1	281	240	244	11.9999
eeee	chr2:98262431-98262750(+)$1	319	269	273	11.9999
DDCC	chr1:36106924-36107221(-)$1	297	108	112	11.9999
HHHH	chrX:119005747-119006053(+)$1	306	280	284	11.9999
ddd]	chr1:19923404-19923696(+)$1	292	125	129	11.9999
dd[h	chr19:49999594-49999824(+)$1	230	133	137	11.9999
ooff	chr1:45984588-45984827(-)$1	239	37	41	11.9999
g"""	chr17:56429328-56429653(-)$1	325	67	71	11.9999
qqqq	chr12:6976600-6976847(+)$1	247	228	232	11.9999
bhhh	chr11:17099065-17099318(-)$1	253	71	75	11.9999
hhhh	chr20:30193032-30193344(+)$1	312	236	240	11.9999
==!!	chr11:64084824-64085089(-)$1	265	135	139	11.9999
gggg	chr12:57039581-57039850(-)$1	269	123	127	11.9999
ffff	chr11:63742045-63742316(+)$1	271	89	93	11.9999
eeee	chr15:40331192-40331460(-)$1	268	15	19	11.9999
gggg	chr6:27861155-27861405(+)$1	250	216	220	11.9999
33ff	chr9:113018606-113018926(-)$1	320	151	155	11.9999
dddd	chr6:26124309-26124563(+)$1	254	130	134	11.9999
ffff	chrX:77154866-77155152(+)$1	286	223	227	11.9999
eeee	chr10:7830042-7830320(+)$1	278	47	51	11.9999
FFF}	chr8:74205736-74205964(-)$1	228	123	127	11.9999
3ccc	chr7:22862287-22862557(-)$1	270	161	165	11.9999
"fff	chr12:6643913-6644128(+)$1	215	93	97	11.9999
DDDD	chr16:18800334-18800541(-)$1	207	0	4	11.9999
dd]b	chr1:110950106-110950351(-)$1	245	52	56	11.9999
eeeb	chr11:5290936-5291159(-)$1	223	41	45	11.9999
DDDD	chr11:32605279-32605544(+)$1	265	50	54	11.9999
a[dd	chr17:37009849-37010082(-)$1	233	43	47	11.9999
ddd]	chr17:26902392-26902664(-)$1	272	65	69	11.9999
hhhh	chr6:26104073-26104343(+)$1	270	141	145	11.9999
CCCC	chr1:228645377-228645637(-)$1	260	140	144	11.9999
DDD}	chr12:56510477-56510683(+)$1	206	105	109	11.9999
:eee	chr19:8386336-8386554(+)$1	218	2	6	11.9999
FFFD	chr10:75541713-75542002(+)$1	289	3	7	11.9999
4iii	chr6:26204757-26205049(+)$1	292	103	107	11.9999
ddd[	chr3:197677705-197677948(+)$1	243	48	52	11.9999
eeee	chr5:140026967-140027302(-)$1	335	234	238	11.9999
dddd	chr19:18684002-18684228(+)$1	226	25	29	11.9999
AEEE	chr6:27100350-27100637(-)$1	287	161	165	11.9999
d]bb	chr5:177019109-177019432(+)$1	323	95	99	11.9999
ddoo	chr15:66795738-66795962(-)$1	224	118	122	11.9999
JJJJ	chr5:81573552-81573772(-)$1	220	22	26	11.9999
]a]c	chr5:68462855-68463201(+)$1	346	157	161	11.9999
DDDD	chr6:27835150-27835448(-)$1	298	11	15	11.9999
eee]	chr1:149858072-149858325(-)$1	253	57	61	11.9999
ccc2	chr11:5275536-5275810(-)$1	274	174	178	11.9999
EEEK	chr11:118272300-118272522(+)$1	222	30	34	11.9999
hhhh	chr7:10979563-10979855(-)$1	292	66	70	11.9999
ii[b	chr12:6645559-6645798(+)$1	239	28	32	11.9999
mddd	chr11:5290928-5291136(-)$1	208	18	22	11.9999
EEEE	chr15:64385842-64386171(-)$1	329	160	164	11.9999
_BBZ	chr11:5291012-5291270(-)$1	258	152	156	11.9999
DDDD	chr12:8088512-8088867(-)$1	355	0	4	11.9999
CC}D	chrX:153060068-153060309(+)$1	241	190	194	11.9999
:EEE	chr11:8704648-8704852(+)$1	204	186	190	11.9999
b]a]	chr19:572492-572804(+)$1	312	208	212	11.9999
gggg	chr12:49663147-49663376(+)$1	229	30	34	11.9999
GDDD	chr11:67351833-67352041(+)$1	208	159	163	11.9999
EEEK	chr11:118272322-118272533(+)$1	211	8	12	11.9999
CC{B	chr15:45003618-45003913(+)$1	295	19	23	11.9999
MMMM	chr11:5290985-5291212(-)$1	227	94	98	11.9999
eee2	chr12:49524980-49525274(-)$1	294	148	152	11.9999
gggg	chr11:5290786-5291006(-)$1	220	11	15	11.9999
dd[c	chr1:33502293-33502576(-)$1	283	121	125	11.9999
eDDD	chr1:45478473-45478722(+)$1	249	185	189	11.9999
d]bb	chr1:205718997-205719220(-)$1	223	42	46	11.9999
ffff	chr12:57066704-57066950(-)$1	246	27	31	11.9999
eeee	chr8:125551267-125551581(+)$1	314	204	208	11.9999
gggg	chr12:112846323-112846555(-)$1	232	55	59	11.9999
ddd]	chr2:47403478-47403739(-)$1	261	52	56	11.9999
HHHH	chrX:55052282-55052549(-)$1	267	15	19	11.9999
ffff	chr6:75953335-75953601(-)$1	266	108	112	11.9999
cccm	chr11:67351841-67352102(+)$1	261	151	155	11.9999
::DD	chr6:26021825-26022085(+)$1	260	0	4	11.9999
cbbq	chr1:110950151-110950415(-)$1	264	116	120	11.9999
dddd	chr12:49523373-49523606(-)$1	233	134	138	11.9999
f::F	chr11:8704240-8704464(+)$1	224	126	130	11.9999
ccdd	chr12:49658768-49659070(+)$1	302	198	202	11.9999
eeee	chr3:40498729-40498955(+)$1	226	22	26	11.9999
eeee	chr6:31701904-31702140(-)$1	236	55	59	11.9999
d[bb	chr16:18800285-18800534(-)$1	249	36	40	11.9999
]bb]	chr5:81574037-81574242(-)$1	205	37	41	11.9999
DDDY	chr6:27775504-27775784(-)$1	280	153	157	11.9999
ccc]	chr6:26285544-26285845(-)$1	301	136	140	11.9999
ccc[	chr12:6976647-6976905(+)$1	258	181	185	11.9999
dd[h	chr19:49999624-49999828(+)$1	204	103	107	11.9999
EE||	chr8:126010673-126010976(+)$1	303	173	177	11.9999

#DB
((((	chr20:60962276-60962507(+)$1	1	5	9	11.9999
))))	chr16:202762-203043(+)$1	1	240	244	11.9999
))))	chr2:98262431-98262750(+)$1	1	269	273	11.9999
))))	chr1:36106924-36107221(-)$1	1	108	112	11.9999
))))	chrX:119005747-119006053(+)$1	1	280	284	11.9999
))).	chr1:19923404-19923696(+)$1	1	125	129	11.9999
((.(	chr19:49999594-49999824(+)$1	1	133	137	11.9999
..))	chr1:45984588-45984827(-)$1	1	37	41	11.9999
(...	chr17:56429328-56429653(-)$1	1	67	71	11.9999
....	chr12:6976600-6976847(+)$1	1	228	232	11.9999
))))	chr11:17099065-17099318(-)$1	1	71	75	11.9999
((((	chr20:30193032-30193344(+)$1	1	236	240	11.9999
((..	chr11:64084824-64085089(-)$1	1	135	139	11.9999
))))	chr12:57039581-57039850(-)$1	1	123	127	11.9999
((((	chr11:63742045-63742316(+)$1	1	89	93	11.9999
((((	chr15:40331192-40331460(-)$1	1	15	19	11.9999
((((	chr6:27861155-27861405(+)$1	1	216	220	11.9999
..))	chr9:113018606-113018926(-)$1	1	151	155	11.9999
))))	chr6:26124309-26124563(+)$1	1	130	134	11.9999
))))	chrX:77154866-77155152(+)$1	1	223	227	11.9999
((((	chr10:7830042-7830320(+)$1	1	47	51	11.9999
))).	chr8:74205736-74205964(-)$1	1	123	127	11.9999
.)))	chr7:22862287-22862557(-)$1	1	161	165	11.9999
.(((	chr12:6643913-6644128(+)$1	1	93	97	11.9999
((((	chr16:18800334-18800541(-)$1	1	0	4	11.9999
)).)	chr1:110950106-110950351(-)$1	1	52	56	11.9999
((((	chr11:5290936-5291159(-)$1	1	41	45	11.9999
((((	chr11:32605279-32605544(+)$1	1	50	54	11.9999
(.((	chr17:37009849-37010082(-)$1	1	43	47	11.9999
))).	chr17:26902392-26902664(-)$1	1	65	69	11.9999
((((	chr6:26104073-26104343(+)$1	1	141	145	11.9999
))))	chr1:228645377-228645637(-)$1	1	140	144	11.9999
))).	chr12:56510477-56510683(+)$1	1	105	109	11.9999
.(((	chr19:8386336-8386554(+)$1	1	2	6	11.9999
((((	chr10:75541713-75542002(+)$1	1	3	7	11.9999
.)))	chr6:26204757-26205049(+)$1	1	103	107	11.9999
(((.	chr3:197677705-197677948(+)$1	1	48	52	11.9999
))))	chr5:140026967-140027302(-)$1	1	234	238	11.9999
((((	chr19:18684002-18684228(+)$1	1	25	29	11.9999
))))	chr6:27100350-27100637(-)$1	1	161	165	11.9999
).))	chr5:177019109-177019432(+)$1	1	95	99	11.9999
((..	chr15:66795738-66795962(-)$1	1	118	122	11.9999
((((	chr5:81573552-81573772(-)$1	1	22	26	11.9999
.).)	chr5:68462855-68463201(+)$1	1	157	161	11.9999
((((	chr6:27835150-27835448(-)$1	1	11	15	11.9999
))).	chr1:149858072-149858325(-)$1	1	57	61	11.9999
))).	chr11:5275536-5275810(-)$1	1	174	178	11.9999
(((.	chr11:118272300-118272522(+)$1	1	30	34	11.9999
))))	chr7:10979563-10979855(-)$1	1	66	70	11.9999
((.(	chr12:6645559-6645798(+)$1	1	28	32	11.9999
.)))	chr11:5290928-5291136(-)$1	1	18	22	11.9999
))))	chr15:64385842-64386171(-)$1	1	160	164	11.9999
.)).	chr11:5291012-5291270(-)$1	1	152	156	11.9999
((((	chr12:8088512-8088867(-)$1	1	0	4	11.9999
)).)	chrX:153060068-153060309(+)$1	1	190	194	11.9999
.)))	chr11:8704648-8704852(+)$1	1	186	190	11.9999
).).	chr19:572492-572804(+)$1	1	208	212	11.9999
((((	chr12:49663147-49663376(+)$1	1	30	34	11.9999
))))	chr11:67351833-67352041(+)$1	1	159	163	11.9999
(((.	chr11:118272322-118272533(+)$1	1	8	12	11.9999
((.(	chr15:45003618-45003913(+)$1	1	19	23	11.9999
....	chr11:5290985-5291212(-)$1	1	94	98	11.9999
))).	chr12:49524980-49525274(-)$1	1	148	152	11.9999
((((	chr11:5290786-5291006(-)$1	1	11	15	11.9999
((.(	chr1:33502293-33502576(-)$1	1	121	125	11.9999
))))	chr1:45478473-45478722(+)$1	1	185	189	11.9999
).))	chr1:205718997-205719220(-)$1	1	42	46	11.9999
))))	chr12:57066704-57066950(-)$1	1	27	31	11.9999
((((	chr8:125551267-125551581(+)$1	1	204	208	11.9999
))))	chr12:112846323-112846555(-)$1	1	55	59	11.9999
))).	chr2:47403478-47403739(-)$1	1	52	56	11.9999
((((	chrX:55052282-55052549(-)$1	1	15	19	11.9999
))))	chr6:75953335-75953601(-)$1	1	108	112	11.9999
(((.	chr11:67351841-67352102(+)$1	1	151	155	11.9999
..((	chr6:26021825-26022085(+)$1	1	0	4	11.9999
)((.	chr1:110950151-110950415(-)$1	1	116	120	11.9999
((((	chr12:49523373-49523606(-)$1	1	134	138	11.9999
)..)	chr11:8704240-8704464(+)$1	1	126	130	11.9999
))))	chr12:49658768-49659070(+)$1	1	198	202	11.9999
))))	chr3:40498729-40498955(+)$1	1	22	26	11.9999
((((	chr6:31701904-31702140(-)$1	1	55	59	11.9999
(.((	chr16:18800285-18800534(-)$1	1	36	40	11.9999
.)).	chr5:81574037-81574242(-)$1	1	37	41	11.9999
))).	chr6:27775504-27775784(-)$1	1	153	157	11.9999
))).	chr6:26285544-26285845(-)$1	1	136	140	11.9999
(((.	chr12:6976647-6976905(+)$1	1	181	185	11.9999
((.(	chr19:49999624-49999828(+)$1	1	103	107	11.9999
))..	chr8:126010673-126010976(+)$1	1	173	177	11.9999

#PSSM
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	

#score	1055.9999999999998
#seq	88
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_transcript_m2_run2.nuc.txt

#NT
GUGAAGG	chr12:6643937-6644155(+)$1	218	70	77	12.9117
GGGCAGG	chr17:77078044-77078299(+)$1	255	8	15	13.1323
GUGAAGG	chr14:35872778-35872996(-)$1	218	53	60	12.9117
GUGAAGG	chr22:50354825-50355088(+)$1	263	158	165	12.9117
GCGCAGG	chr17:70117866-70118131(+)$1	265	11	18	13.1323
GUGCAUG	chr8:100507998-100508256(+)$1	258	135	142	12.1029
GUGCGGG	chr16:67976393-67976648(-)$1	255	23	30	12.1764
GCGCAGG	chr7:150777605-150777858(-)$1	253	66	73	13.1323
UUGCAGG	chr16:67984010-67984326(-)$1	316	63	70	12.4705
GUGUAGG	chrM:14235-14449(-)$1	214	133	140	12.7647
GUGCAGG	chr19:18668655-18668997(+)$1	342	63	70	16.5147
CUGCAGG	chr2:27356158-27356477(-)$1	319	0	7	12.6911
GCGCAGG	chr16:88723676-88723910(-)$1	234	107	114	13.1323
GUGAAGG	chr17:27074221-27074456(+)$1	235	8	15	12.9117
GUGCGGG	chr17:74732712-74732968(-)$1	256	176	183	12.1764
CUGCAGG	chr17:79892296-79892565(-)$1	269	194	201	12.6911
UUGCAGG	chr7:73010748-73011033(-)$1	285	78	85	12.4705
GGGCAGG	chr5:134263344-134263583(+)$1	239	160	167	13.1323
GCGCAGG	chr5:179050391-179050697(-)$1	306	7	14	13.1323
GUGUAGG	chrM:14217-14422(-)$1	205	106	113	12.7647
GAGCAGG	chr9:140347334-140347564(-)$1	230	93	100	13.2794
GUGCUGG	chr20:34205450-34205692(+)$1	242	38	45	12.1764
GUCCAGG	chr14:54418396-54418665(-)$1	269	198	205	11.8823
GUUCAGG	chr8:22885003-22885257(-)$1	254	58	65	11.9558
GUGGAGG	chrX:23801441-23801681(+)$1	240	128	135	12.6911
GUGAAGG	chr14:24568831-24569086(+)$1	255	92	99	12.9117
GAGCAGG	chr9:140347364-140347588(-)$1	224	117	124	13.2794
GUGCUGG	chr11:64534863-64535123(-)$1	260	182	189	12.1764
GGGCAGG	chr20:60894109-60894349(-)$1	240	23	30	13.1323
GCGCAGG	chr20:62371822-62372086(+)$1	264	97	104	13.1323
CUGCAGG	chr20:57226350-57226602(+)$1	252	56	63	12.6911
GUGCAGU	chr17:80050938-80051192(-)$1	254	34	41	12.1029
gagcagg	chr14:23791027-23791290(+)$1	263	22	29	13.2794
GUUCAGG	chr16:87377031-87377302(-)$1	271	14	21	11.9558
GUGAAGG	chr17:63532217-63532503(-)$1	286	76	83	12.9117
GGGCAGG	chr20:62594800-62595059(-)$1	259	212	219	13.1323
GAGCAGG	chr16:72142227-72142502(+)$1	275	68	75	13.2794
GUGCAAG	chr16:50582551-50582813(+)$1	262	83	90	12.1764
GUGCUGG	chr11:721152-721409(+)$1	257	170	177	12.1764
gugcaug	chr17:7010948-7011255(-)$1	307	134	141	12.1029
GUGUAGG	chrM:14181-14398(-)$1	217	82	89	12.7647
GUGCGGG	chr9:139726256-139726554(+)$1	298	105	112	12.1764
AUGCAGG	chr6:43746187-43746420(+)$1	233	80	87	12.3235
GUGCACG	chr19:5924182-5924445(-)$1	263	21	28	12.0294
GUGCAGG	chr19:1012061-1012406(-)$1	345	35	42	16.5147
GUGCAAG	chr2:43453234-43453483(-)$1	249	73	80	12.1764
GUGCAGG	chr17:79683019-79683260(+)$1	241	95	102	16.5147
GUGCAGA	chr20:61846853-61847101(-)$1	248	142	149	11.9558
CUGCAGG	chr3:5021991-5022271(+)$1	280	169	176	12.6911
GUGCAGG	chr20:56138169-56138419(+)$1	250	201	208	16.5147
GUGCAgg	chr11:721663-721908(+)$1	245	28	35	16.5147
UUGCAGG	chr10:102740036-102740296(+)$1	260	236	243	12.4705
GUGUAGG	chrM:14222-14435(-)$1	213	119	126	12.7647
GGGCAGG	chr5:134263334-134263544(+)$1	210	170	177	13.1323
GUGCAGC	chr12:7023720-7023969(+)$1	249	210	217	11.9558
GUACAGG	chr7:150774541-150774786(-)$1	245	73	80	11.8823
GUGCAGG	chr20:56138247-56138471(+)$1	224	123	130	16.5147
GUGCAGU	chr8:121824467-121824737(-)$1	270	72	79	12.1029
GUGGAGG	chr16:46918303-46918551(+)$1	248	150	157	12.6911
GAGCAGG	chr16:88722283-88722555(-)$1	272	110	117	13.2794
GAGCAGG	chr21:47571226-47571531(-)$1	305	36	43	13.2794
GUGCAGG	chr19:59059987-59060219(+)$1	232	128	135	16.5147
gugcaag	chr4:39299119-39299363(-)$1	244	96	103	12.1764
GAGCAGG	chr9:140347388-140347614(-)$1	226	143	150	13.2794
CUGCAGG	chr14:35873474-35873722(-)$1	248	16	23	12.6911
GUGCAGU	chr6:74230519-74230781(-)$1	262	3	10	12.1029
CUGCAGG	chr2:220426826-220427111(-)$1	285	93	100	12.6911

#otherMatches

#Struct PSSM
mma]ccc	chr2:219266345-219266576(+)$1	231	63	70	12.6911
ddd::BB	chr12:6643937-6644155(+)$1	218	70	77	12.9117
DDFFFFF	chr17:77078044-77078299(+)$1	255	8	15	13.1323
ggEEEEE	chr14:35872778-35872996(-)$1	218	53	60	12.9117
f4444bb	chr22:50354825-50355088(+)$1	263	158	165	12.9117
EEDDDDL	chr17:70117866-70118131(+)$1	265	11	18	13.1323
______J	chr8:100507998-100508256(+)$1	258	135	142	12.1029
fffff[a	chr16:67976393-67976648(-)$1	255	23	30	12.1764
DDDD::J	chr7:150777605-150777858(-)$1	253	66	73	13.1323
::IIIII	chr16:67984010-67984326(-)$1	316	63	70	12.4705
bb22a44	chrM:14235-14449(-)$1	214	133	140	12.7647
===a[dd	chr19:18668655-18668997(+)$1	342	63	70	16.5147
FFFFFFF	chr2:27356158-27356477(-)$1	319	0	7	12.6911
====fff	chr16:88723676-88723910(-)$1	234	107	114	13.1323
e[dddd!	chr17:27074221-27074456(+)$1	235	8	15	12.9117
dddd22c	chr17:74732712-74732968(-)$1	256	176	183	12.1764
eeea:::	chr17:79892296-79892565(-)$1	269	194	201	12.6911
]ccc::e	chr7:73010748-73011033(-)$1	285	78	85	12.4705
udddd22	chr5:134263344-134263583(+)$1	239	160	167	13.1323
ccc[ccc	chr5:179050391-179050697(-)$1	306	7	14	13.1323
bb22a44	chrM:14217-14422(-)$1	205	106	113	12.7647
a[bb[ff	chr9:140347334-140347564(-)$1	230	93	100	13.2794
gggggmm	chr20:34205450-34205692(+)$1	242	38	45	12.1764
BB}EEEE	chr14:54418396-54418665(-)$1	269	198	205	11.8823
EE{DDDD	chr8:22885003-22885257(-)$1	254	58	65	11.9558
c]dddd]	chrX:23801441-23801681(+)$1	240	128	135	12.6911
dddd"""	chr14:24568831-24569086(+)$1	255	92	99	12.9117
FFF::ff	chr9:140347364-140347588(-)$1	224	117	124	13.2794
""fffff	chr11:64534863-64535123(-)$1	260	182	189	12.1764
[a[a[bb	chr20:60894109-60894349(-)$1	240	23	30	13.1323
eeee]gg	chr20:62371822-62372086(+)$1	264	97	104	13.1323
g[bb!!g	chr20:57226350-57226602(+)$1	252	56	63	12.6911
IIIIIII	chr17:80050938-80051192(-)$1	254	34	41	12.1029
DDDD:gg	chr14:23791027-23791290(+)$1	263	22	29	13.2794
[aeeeee	chr16:87377031-87377302(-)$1	271	14	21	11.9558
g[bb[gg	chr17:63532217-63532503(-)$1	286	76	83	12.9117
CBBYYA}	chr20:62594800-62595059(-)$1	259	212	219	13.1323
5ddddee	chr16:72142227-72142502(+)$1	275	68	75	13.2794
c]bb22a	chr16:50582551-50582813(+)$1	262	83	90	12.1764
nccc]ee	chr11:721152-721409(+)$1	257	170	177	12.1764
=======	chr17:7010948-7011255(-)$1	307	134	141	12.1029
GGGG:::	chrM:14181-14398(-)$1	217	82	89	12.7647
dddd]cc	chr9:139726256-139726554(+)$1	298	105	112	12.1764
33bb]gg	chr6:43746187-43746420(+)$1	233	80	87	12.3235
::DDDDB	chr19:5924182-5924445(-)$1	263	21	28	12.0294
ddddnnn	chr19:1012061-1012406(-)$1	345	35	42	16.5147
eee]eee	chr2:43453234-43453483(-)$1	249	73	80	12.1764
GGGGGGG	chr17:79683019-79683260(+)$1	241	95	102	16.5147
dd+++++	chr20:61846853-61847101(-)$1	248	142	149	11.9558
ffffff[	chr3:5021991-5022271(+)$1	280	169	176	12.6911
E}CCCYY	chr20:56138169-56138419(+)$1	250	201	208	16.5147
eeee:::	chr11:721663-721908(+)$1	245	28	35	16.5147
C}EEEEE	chr10:102740036-102740296(+)$1	260	236	243	12.4705
bb22a44	chrM:14222-14435(-)$1	213	119	126	12.7647
qqqqqa]	chr5:134263334-134263544(+)$1	210	170	177	13.1323
eeee]bb	chr12:7023720-7023969(+)$1	249	210	217	11.9558
oooccc2	chr7:150774541-150774786(-)$1	245	73	80	11.8823
ccc!!dd	chr20:56138247-56138471(+)$1	224	123	130	16.5147
:a[dddd	chr8:121824467-121824737(-)$1	270	72	79	12.1029
[ddddll	chr16:46918303-46918551(+)$1	248	150	157	12.6911
ffff!!h	chr16:88722283-88722555(-)$1	272	110	117	13.2794
E{BB{EE	chr21:47571226-47571531(-)$1	305	36	43	13.2794
bbbbooo	chr19:59059987-59060219(+)$1	232	128	135	16.5147
nnnnncc	chr4:39299119-39299363(-)$1	244	96	103	12.1764
eeeeeff	chr9:140347388-140347614(-)$1	226	143	150	13.2794
GG{A:::	chr14:35873474-35873722(-)$1	248	16	23	12.6911
:::::::	chr6:74230519-74230781(-)$1	262	3	10	12.1029
ff[bb""	chr2:220426826-220427111(-)$1	285	93	100	12.6911

#DB
..).)))	chr2:219266345-219266576(+)$1	1	63	70	12.6911
)))..))	chr12:6643937-6644155(+)$1	1	70	77	12.9117
(((((((	chr17:77078044-77078299(+)$1	1	8	15	13.1323
))(((((	chr14:35872778-35872996(-)$1	1	53	60	12.9117
)....))	chr22:50354825-50355088(+)$1	1	158	165	12.9117
((((((.	chr17:70117866-70118131(+)$1	1	11	18	13.1323
......)	chr8:100507998-100508256(+)$1	1	135	142	12.1029
(((((.(	chr16:67976393-67976648(-)$1	1	23	30	12.1764
((((..(	chr7:150777605-150777858(-)$1	1	66	73	13.1323
..(((((	chr16:67984010-67984326(-)$1	1	63	70	12.4705
))..)..	chrM:14235-14449(-)$1	1	133	140	12.7647
((((.((	chr19:18668655-18668997(+)$1	1	63	70	16.5147
(((((((	chr2:27356158-27356477(-)$1	1	0	7	12.6911
))))(((	chr16:88723676-88723910(-)$1	1	107	114	13.1323
(.((((.	chr17:27074221-27074456(+)$1	1	8	15	12.9117
))))..)	chr17:74732712-74732968(-)$1	1	176	183	12.1764
))))...	chr17:79892296-79892565(-)$1	1	194	201	12.6911
.)))..(	chr7:73010748-73011033(-)$1	1	78	85	12.4705
.))))..	chr5:134263344-134263583(+)$1	1	160	167	13.1323
(((.(((	chr5:179050391-179050697(-)$1	1	7	14	13.1323
))..)..	chrM:14217-14422(-)$1	1	106	113	12.7647
(.((.((	chr9:140347334-140347564(-)$1	1	93	100	13.2794
(((((..	chr20:34205450-34205692(+)$1	1	38	45	12.1764
)).))))	chr14:54418396-54418665(-)$1	1	198	205	11.8823
((.((((	chr8:22885003-22885257(-)$1	1	58	65	11.9558
).)))).	chrX:23801441-23801681(+)$1	1	128	135	12.6911
((((...	chr14:24568831-24569086(+)$1	1	92	99	12.9117
(((..((	chr9:140347364-140347588(-)$1	1	117	124	13.2794
..(((((	chr11:64534863-64535123(-)$1	1	182	189	12.1764
.(.(.((	chr20:60894109-60894349(-)$1	1	23	30	13.1323
)))).))	chr20:62371822-62372086(+)$1	1	97	104	13.1323
(.((..(	chr20:57226350-57226602(+)$1	1	56	63	12.6911
(((((((	chr17:80050938-80051192(-)$1	1	34	41	12.1029
((((.((	chr14:23791027-23791290(+)$1	1	22	29	13.2794
.((((((	chr16:87377031-87377302(-)$1	1	14	21	11.9558
(.((.((	chr17:63532217-63532503(-)$1	1	76	83	12.9117
)))..).	chr20:62594800-62595059(-)$1	1	212	219	13.1323
.))))))	chr16:72142227-72142502(+)$1	1	68	75	13.2794
).))..)	chr16:50582551-50582813(+)$1	1	83	90	12.1764
.))).))	chr11:721152-721409(+)$1	1	170	177	12.1764
(((((((	chr17:7010948-7011255(-)$1	1	134	141	12.1029
((((...	chrM:14181-14398(-)$1	1	82	89	12.7647
)))).))	chr9:139726256-139726554(+)$1	1	105	112	12.1764
..)).))	chr6:43746187-43746420(+)$1	1	80	87	12.3235
..(((((	chr19:5924182-5924445(-)$1	1	21	28	12.0294
((((...	chr19:1012061-1012406(-)$1	1	35	42	16.5147
))).)))	chr2:43453234-43453483(-)$1	1	73	80	12.1764
(((((((	chr17:79683019-79683260(+)$1	1	95	102	16.5147
((.....	chr20:61846853-61847101(-)$1	1	142	149	11.9558
((((((.	chr3:5021991-5022271(+)$1	1	169	176	12.6911
).)))..	chr20:56138169-56138419(+)$1	1	201	208	16.5147
))))...	chr11:721663-721908(+)$1	1	28	35	16.5147
).)))))	chr10:102740036-102740296(+)$1	1	236	243	12.4705
))..)..	chrM:14222-14435(-)$1	1	119	126	12.7647
.....).	chr5:134263334-134263544(+)$1	1	170	177	13.1323
)))).))	chr12:7023720-7023969(+)$1	1	210	217	11.9558
...))).	chr7:150774541-150774786(-)$1	1	73	80	11.8823
(((..((	chr20:56138247-56138471(+)$1	1	123	130	16.5147
.(.((((	chr8:121824467-121824737(-)$1	1	72	79	12.1029
.((((..	chr16:46918303-46918551(+)$1	1	150	157	12.6911
((((..(	chr16:88722283-88722555(-)$1	1	110	117	13.2794
(.((.((	chr21:47571226-47571531(-)$1	1	36	43	13.2794
((((...	chr19:59059987-59060219(+)$1	1	128	135	16.5147
.....))	chr4:39299119-39299363(-)$1	1	96	103	12.1764
)))))((	chr9:140347388-140347614(-)$1	1	143	150	13.2794
((.(...	chr14:35873474-35873722(-)$1	1	16	23	12.6911
.......	chr6:74230519-74230781(-)$1	1	3	10	12.1029
((.((..	chr2:220426826-220427111(-)$1	1	93	100	12.6911

#PSSM
G : 0.80	C : 0.08	U : 0.04	g : 0.04	A : 0.01	
U : 0.72	A : 0.08	G : 0.07	C : 0.07	u : 0.02	a : 0.01	
G : 0.89	g : 0.04	U : 0.02	C : 0.01	A : 0.01	
C : 0.76	A : 0.08	U : 0.05	G : 0.04	c : 0.04	
A : 0.86	G : 0.04	U : 0.04	a : 0.04	
G : 0.88	g : 0.02	A : 0.02	U : 0.01	u : 0.01	C : 0.01	a : 0.01	
G : 0.86	g : 0.05	U : 0.04	A : 0.01	C : 0.01	

#score	886.0882352941165
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF803GSP_RPS11_transcript_m2_run1.nuc.txt

#NT
gcagggucgg	chrX:68892278-68892501(+)$1	223	99	109	19.6666
GUGGGGGUGG	chr7:5340290-5340511(+)$1	221	19	29	18.0000
GGAGGGCUGG	chr17:56408175-56408393(-)$1	218	15	25	16.0000
gcaggguugg	chr3:134502292-134502497(-)$1	205	155	165	19.9999
gcagggucgg	chrX:68892270-68892478(+)$1	208	107	117	19.6666
GCAGGGUUGG	chr17:56408727-56408977(-)$1	250	192	202	19.9999
gugggggcgg	chr5:137368795-137369017(+)$1	222	31	41	17.6666
gcagggucgg	chrX:68892301-68892514(+)$1	213	76	86	19.6666
GUAGGGACGG	chr8:141554079-141554299(-)$1	220	109	119	17.6666
gcgggggcgg	chr1:22263547-22263814(-)$1	267	195	205	18.3333
GUAGGGACGG	chr8:141554074-141554279(-)$1	205	89	99	17.6666
GUUGGGGUGG	chr17:56408990-56409278(-)$1	288	191	201	16.6666
GCGGGGGUGU	chr6:26204967-26205210(+)$1	243	26	36	14.3333
GUGGGGGUGG	chr7:5340286-5340490(+)$1	204	23	33	18.0000

#otherMatches

#Struct PSSM
4eeeee]ccc	chr3:134502255-134502492(-)$1	237	150	160	19.9999
3ffffff]bb	chrX:68892278-68892501(+)$1	223	99	109	19.6666
DDDDKKFFFF	chr7:5340290-5340511(+)$1	221	19	29	18.0000
fff::DDDDK	chr17:56408175-56408393(-)$1	218	15	25	16.0000
4eeeee]ccc	chr3:134502292-134502497(-)$1	205	155	165	19.9999
3ffffff]bb	chrX:68892270-68892478(+)$1	208	107	117	19.6666
ccffffffnn	chr17:56408727-56408977(-)$1	250	192	202	19.9999
ggggggg[dd	chr5:137368795-137369017(+)$1	222	31	41	17.6666
3ffffff]bb	chrX:68892301-68892514(+)$1	213	76	86	19.6666
dd]eeeee22	chr8:141554079-141554299(-)$1	220	109	119	17.6666
hhhhhh[ccc	chr1:22263547-22263814(-)$1	267	195	205	18.3333
dd]eeeee22	chr8:141554074-141554279(-)$1	205	89	99	17.6666
ddd!!cccrr	chr17:56408990-56409278(-)$1	288	191	201	16.6666
Deeeee[ccc	chr6:26204967-26205210(+)$1	243	26	36	14.3333
CCCAHHHHHH	chr7:5340286-5340490(+)$1	204	23	33	18.0000

#DB
.))))).)))	chr3:134502255-134502492(-)$1	1	150	160	19.9999
.)))))).))	chrX:68892278-68892501(+)$1	1	99	109	19.6666
((((..((((	chr7:5340290-5340511(+)$1	1	19	29	18.0000
)))..((((.	chr17:56408175-56408393(-)$1	1	15	25	16.0000
.))))).)))	chr3:134502292-134502497(-)$1	1	155	165	19.9999
.)))))).))	chrX:68892270-68892478(+)$1	1	107	117	19.6666
((((((((..	chr17:56408727-56408977(-)$1	1	192	202	19.9999
(((((((.((	chr5:137368795-137369017(+)$1	1	31	41	17.6666
.)))))).))	chrX:68892301-68892514(+)$1	1	76	86	19.6666
)).)))))..	chr8:141554079-141554299(-)$1	1	109	119	17.6666
((((((.(((	chr1:22263547-22263814(-)$1	1	195	205	18.3333
)).)))))..	chr8:141554074-141554279(-)$1	1	89	99	17.6666
(((..(((..	chr17:56408990-56409278(-)$1	1	191	201	16.6666
((((((.(((	chr6:26204967-26205210(+)$1	1	26	36	14.3333
((((((((((	chr7:5340286-5340490(+)$1	1	23	33	18.0000

#PSSM
G : 0.53	g : 0.46	
c : 0.39	U : 0.33	C : 0.13	G : 0.06	u : 0.06	
a : 0.33	A : 0.26	G : 0.20	g : 0.13	U : 0.06	
G : 0.53	g : 0.46	
G : 0.53	g : 0.46	
G : 0.53	g : 0.46	
u : 0.33	G : 0.26	g : 0.13	A : 0.13	C : 0.06	U : 0.06	
U : 0.39	c : 0.33	u : 0.13	C : 0.13	
G : 0.53	g : 0.46	
g : 0.46	G : 0.46	U : 0.06	

#score	273.33333333333326
#seq	15
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_CDS_m1_run2.nuc.txt

#NT
cggcggcggcgguggcg	chr1:27023202-27023432(+)$1	230	54	71	31.3749
CGGGCUCGGCGGCGGCG	chr2:172016826-172017094(-)$1	268	229	246	24.3750
aggcggcggcggcggcg	chr8:145687739-145688007(-)$1	268	232	249	34.2500
gcgaggcggcggcggcg	chr1:27022891-27023145(+)$1	254	112	129	30.0000
cggcggcggcggcggcg	chr20:3451843-3452093(+)$1	250	161	178	35.0000
GGACGGCGGCGGCGGCG	chr5:173043246-173043507(-)$1	261	73	90	32.8750
GGGUGGCGCCUGCGGGG	chr7:150777594-150777900(-)$1	306	133	150	23.3750
Ggguggcggcggcggcg	chr1:27022998-27023296(+)$1	298	138	155	34.1250
GGGCCGGGGCGCCGGGG	chr19:49002197-49002498(-)$1	301	11	28	24.1250
GGGCAGCCGAGGCCGCG	chr6:31864774-31865112(-)$1	338	198	215	22.9999
GGGUGGCGCCUGCGGGG	chr7:150777704-150777985(-)$1	281	218	235	23.3750
GGGCUGCGGGCCCGGCG	chr6:41747991-41748271(+)$1	280	151	168	22.8749
gggcggcggcggcgggc	chr19:1592433-1592683(-)$1	250	8	25	30.7500
cggcggcggcgcgggcg	chr19:460626-460867(-)$1	241	13	30	27.4999
gagcggcGGGGGAGGCG	chr20:57267815-57268088(+)$1	273	3	20	27.2499
gggcggcggcgggggcc	chr1:2160041-2160332(+)$1	291	94	111	29.6249
Uggcggcggcgguggcg	chr13:28712746-28713023(+)$1	277	109	126	30.7499
GGGCGGCAGCGGCUCCG	chr17:74533295-74533599(-)$1	304	156	173	24.4999
gggcggcggcggcggcg	chr8:81398834-81399146(+)$1	312	185	202	37.3750
gggcagcgcgggcggcg	chr3:52567648-52567895(-)$1	247	108	125	27.3749
cggcggcggcggcggcg	chr18:19321473-19321727(+)$1	254	24	41	35.0000
cggcggcggcggcggcg	chr20:3451893-3452150(+)$1	257	111	128	35.0000
AGCCUGCGGGGGCGGGG	chr3:185826159-185826408(-)$1	249	171	188	21.7500
Ggguggcggcggcggcg	chr1:27022945-27023198(+)$1	253	191	208	34.1250
cagcggcggcggcggcg	chr9:116918129-116918385(+)$1	256	135	152	31.1250
gggcagcggggagggcg	chr20:62371182-62371517(+)$1	335	301	318	23.7499
GGCCCGCGGUGGCUGGG	chr11:639275-639568(+)$1	293	109	126	21.3750
cggcggcgguggcggcg	chr17:30264218-30264507(+)$1	289	129	146	31.9999
gggcggggugggagggg	chr1:27022785-27022996(+)$1	211	39	56	20.3749
ucgcggcggcggcggga	chr11:59382735-59382988(-)$1	253	2	19	23.7500
GGGCCCCGGUGGGCGCG	chr1:1355866-1356128(-)$1	262	236	253	20.1249
GGGGggcugcggcggcg	chr1:27023787-27024050(+)$1	263	116	133	29.6250
gggccgcggcggcggAG	chr13:28713103-28713375(+)$1	272	143	160	31.2499
UGGCGGCGGCGGCCGGg	chr10:103454200-103454468(-)$1	268	72	89	28.6249
GGGAUGCGGCGGCCGCG	chr17:25783615-25783884(+)$1	269	115	132	27.2500
GCGGCGCGGCGGCUGCG	chr14:102786150-102786414(+)$1	264	144	161	23.8750
GAgcggcggcggcggug	chr7:139876604-139876843(-)$1	239	113	130	30.1249
gggcggggguggcgggg	chr1:6505670-6505922(-)$1	252	62	79	27.9999
GGGGGGUGGAGGAAGCG	chr13:111366326-111366599(+)$1	273	113	130	19.1249

#otherMatches

#Struct PSSM
gggggggggggdddd[c	chr2:231902498-231902754(+)$1	256	59	76	37.3750
KKJJJJJJJJJJJJJJJ	chr1:27023202-27023432(+)$1	230	54	71	31.3749
DYYBB}JJJJJJJJJJJ	chr2:172016826-172017094(-)$1	268	229	246	24.3750
[ammmma22dddd]bb2	chr8:145687739-145688007(-)$1	268	232	249	34.2500
bb]dddd==========	chr1:27022891-27023145(+)$1	254	112	129	30.0000
=================	chr20:3451843-3452093(+)$1	250	161	178	35.0000
rrrrccc]ccc:iiiii	chr5:173043246-173043507(-)$1	261	73	90	32.8750
dddd22a]ggggggg::	chr7:150777594-150777900(-)$1	306	133	150	23.3750
888ggggggg]gggggg	chr1:27022998-27023296(+)$1	298	138	155	34.1250
FFFFFKKCCCggggggg	chr19:49002197-49002498(-)$1	301	11	28	24.1250
!!bb[bbmmmmbb]bb5	chr6:31864774-31865112(-)$1	338	198	215	22.9999
dddd22a]eeeeeEEEE	chr7:150777704-150777985(-)$1	281	218	235	23.3750
sssffffffGGGGGGG{	chr6:41747991-41748271(+)$1	280	151	168	22.8749
HHHCCC{DDDD{BBDDD	chr19:1592433-1592683(-)$1	250	8	25	30.7500
dIIIIIIIII:eeeeed	chr19:460626-460867(-)$1	241	13	30	27.4999
CKKA{EEEEE{A{CCCE	chr20:57267815-57268088(+)$1	273	3	20	27.2499
]ccc]eeeee333a]gg	chr1:2160041-2160332(+)$1	291	94	111	29.6249
CCC{CCCDDDDJJJJJJ	chr13:28712746-28713023(+)$1	277	109	126	30.7499
hhhhhhhhffffff!!c	chr17:74533295-74533599(-)$1	304	156	173	24.4999
dd333ccceeeeedddd	chr8:81398834-81399146(+)$1	312	185	202	37.3750
ffffff[a[eeeeeccc	chr3:52567648-52567895(-)$1	247	108	125	27.3749
b[bb[bbmmmmbb]bb]	chr18:19321473-19321727(+)$1	254	24	41	35.0000
=================	chr20:3451893-3452150(+)$1	257	111	128	35.0000
b:CCC}A}BB}FFFFFF	chr3:185826159-185826408(-)$1	249	171	188	21.7500
============a!!cc	chr1:27022945-27023198(+)$1	253	191	208	34.1250
::cccbb[bbmmmmbb]	chr9:116918129-116918385(+)$1	256	135	152	31.1250
HHGGGGGGG}FFFFFFC	chr20:62371182-62371517(+)$1	335	301	318	23.7499
gggggggFFFFFFdddd	chr11:639275-639568(+)$1	293	109	126	21.3750
bb[bb[bbmmmmbb]bb	chr17:30264218-30264507(+)$1	289	129	146	31.9999
lllffffff:bb[bb[d	chr1:27022785-27022996(+)$1	211	39	56	20.3749
eeeemmmmeeeeeGGGG	chr11:59382735-59382988(-)$1	253	2	19	23.7500
d]bb]dddd]ffffff]	chr1:1355866-1356128(-)$1	262	236	253	20.1249
FF::ffffff[bb[ddd	chr1:27023787-27024050(+)$1	263	116	133	29.6250
hhhhhhdddd!!a[a!!	chr13:28713103-28713375(+)$1	272	143	160	31.2499
nnnncccJJJJJJJJJJ	chr10:103454200-103454468(-)$1	268	72	89	28.6249
ddd]===========]b	chr17:25783615-25783884(+)$1	269	115	132	27.2500
BBIIIIIIIIIhhhhhh	chr14:102786150-102786414(+)$1	264	144	161	23.8750
33===============	chr7:139876604-139876843(-)$1	239	113	130	30.1249
fffff[bb''''''''h	chr1:6505670-6505922(-)$1	252	62	79	27.9999
=========22dddd]a	chr13:111366326-111366599(+)$1	273	113	130	19.1249

#DB
(((((((((((((((.(	chr2:231902498-231902754(+)$1	1	59	76	37.3750
..(((((((((((((((	chr1:27023202-27023432(+)$1	1	54	71	31.3749
)..)).)))))))))))	chr2:172016826-172017094(-)$1	1	229	246	24.3750
.(....)..)))).)).	chr8:145687739-145688007(-)$1	1	232	249	34.2500
)).))))))))))))))	chr1:27022891-27023145(+)$1	1	112	129	30.0000
)))))))))))))))))	chr20:3451843-3452093(+)$1	1	161	178	35.0000
....))).))).(((((	chr5:173043246-173043507(-)$1	1	73	90	32.8750
))))..).)))))))..	chr7:150777594-150777900(-)$1	1	133	150	23.3750
...))))))).))))))	chr1:27022998-27023296(+)$1	1	138	155	34.1250
(((((..((((((((((	chr19:49002197-49002498(-)$1	1	11	28	24.1250
..((.((....)).)).	chr6:31864774-31865112(-)$1	1	198	215	22.9999
))))..).)))))))))	chr7:150777704-150777985(-)$1	1	218	235	23.3750
...))))))(((((((.	chr6:41747991-41748271(+)$1	1	151	168	22.8749
((((((.((((.(((((	chr19:1592433-1592683(-)$1	1	8	25	30.7500
)(((((((((.((((((	chr19:460626-460867(-)$1	1	13	30	27.4999
(..(.(((((.(.((((	chr20:57267815-57268088(+)$1	1	3	20	27.2499
.))).)))))...).))	chr1:2160041-2160332(+)$1	1	94	111	29.6249
(((.(((((((((((((	chr13:28712746-28713023(+)$1	1	109	126	30.7499
))))))))((((((..(	chr17:74533295-74533599(-)$1	1	156	173	24.4999
))...))))))))((((	chr8:81398834-81399146(+)$1	1	185	202	37.3750
((((((.(.((((((((	chr3:52567648-52567895(-)$1	1	108	125	27.3749
(.((.((....)).)).	chr18:19321473-19321727(+)$1	1	24	41	35.0000
)))))))))))))))))	chr20:3451893-3452150(+)$1	1	111	128	35.0000
).))).).)).))))))	chr3:185826159-185826408(-)$1	1	171	188	21.7500
))))))))))))(..((	chr1:27022945-27023198(+)$1	1	191	208	34.1250
..(((((.((....)).	chr9:116918129-116918385(+)$1	1	135	152	31.1250
))))))))).)))))))	chr20:62371182-62371517(+)$1	1	301	318	23.7499
)))))))((((((((((	chr11:639275-639568(+)$1	1	109	126	21.3750
((.((.((....)).))	chr17:30264218-30264507(+)$1	1	129	146	31.9999
...)))))).((.((.(	chr1:27022785-27022996(+)$1	1	39	56	20.3749
((((....)))))((((	chr11:59382735-59382988(-)$1	1	2	19	23.7500
).)).)))).)))))).	chr1:1355866-1356128(-)$1	1	236	253	20.1249
((..((((((.((.(((	chr1:27023787-27024050(+)$1	1	116	133	29.6250
((((((((((..(.(..	chr13:28713103-28713375(+)$1	1	143	160	31.2499
....)))((((((((((	chr10:103454200-103454468(-)$1	1	72	89	28.6249
))).))))))))))).)	chr17:25783615-25783884(+)$1	1	115	132	27.2500
(((((((((((((((((	chr14:102786150-102786414(+)$1	1	144	161	23.8750
..)))))))))))))))	chr7:139876604-139876843(-)$1	1	113	130	30.1249
(((((.((........(	chr1:6505670-6505922(-)$1	1	62	79	27.9999
)))))))))..)))).)	chr13:111366326-111366599(+)$1	1	113	130	19.1249

#PSSM
G : 0.40	g : 0.27	c : 0.17	U : 0.05	C : 0.02	a : 0.02	A : 0.02	u : 0.02	
g : 0.47	G : 0.37	c : 0.05	a : 0.05	C : 0.02	A : 0.02	
g : 0.60	G : 0.32	C : 0.05	A : 0.02	
c : 0.52	C : 0.22	G : 0.10	U : 0.05	u : 0.05	a : 0.02	A : 0.02	
g : 0.55	G : 0.15	C : 0.12	U : 0.07	a : 0.05	A : 0.02	c : 0.02	
g : 0.62	G : 0.32	U : 0.02	C : 0.02	
c : 0.57	C : 0.32	g : 0.05	G : 0.02	U : 0.02	
g : 0.57	G : 0.35	C : 0.02	A : 0.02	u : 0.02	
g : 0.55	G : 0.35	C : 0.05	c : 0.02	u : 0.02	
c : 0.47	C : 0.22	G : 0.07	g : 0.07	A : 0.05	U : 0.05	u : 0.05	
g : 0.60	G : 0.32	U : 0.05	C : 0.02	
g : 0.55	G : 0.35	C : 0.05	c : 0.02	a : 0.02	
c : 0.45	C : 0.32	g : 0.07	u : 0.05	A : 0.05	a : 0.02	G : 0.02	
g : 0.60	G : 0.19	C : 0.10	U : 0.07	A : 0.02	
g : 0.60	G : 0.37	C : 0.02	
c : 0.45	C : 0.24	G : 0.15	g : 0.10	A : 0.02	u : 0.02	
g : 0.52	G : 0.40	c : 0.05	a : 0.02	

#score	1127.5
#seq	40
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_UTR_m1_run1.nuc.txt

#NT
cccuccccuccca	chr19:46283765-46284069(-)$1	304	117	130	26.8703
ccauccccuuccc	chr19:45323212-45323479(+)$1	267	44	57	23.6296
cccuccccucccc	chr17:29422023-29422294(+)$1	271	55	68	31.4999
CCCUCCCCCACCC	chr8:22454919-22455198(+)$1	279	253	266	23.2592
cccuccccucccc	chr17:36904428-36904699(-)$1	271	56	69	31.4999
cccucaccucacc	chr22:50683533-50683889(-)$1	356	125	138	22.6111
cccaccccuccac	chr9:139942815-139943045(-)$1	230	37	50	24.3703
ccuuccccucgcc	chr2:48132746-48132993(-)$1	247	6	19	22.9814
CCGUCCCCUUCCC	chr2:65659210-65659530(-)$1	320	111	124	23.5370
CCCUCCCAACCCC	chr16:24942279-24942599(-)$1	320	181	194	23.5370
cccgccccacccc	chrX:133119530-133119775(-)$1	245	85	98	24.3703
cccucagcucccc	chr6:41567491-41567775(+)$1	284	86	99	22.4259
cccuccgcucccc	chr21:40177609-40177892(+)$1	283	18	31	26.9629
CCCCUCCCUCCCC	chr2:204305549-204305783(-)$1	234	184	197	24.9259
CCUUCCCCUUCCC	chr17:7311336-7311612(+)$1	276	23	36	23.8148
CCCUCCCCUCCCC	chr15:75074808-75075085(+)$1	277	162	175	31.4999
cccucccgucccc	chr11:2159862-2160084(-)$1	222	106	119	27.5185
CCCUCCCUUCCGC	chr6:41567867-41568164(+)$1	297	42	55	23.1666
cccucccgucccc	chr11:2159939-2160156(-)$1	217	178	191	27.5185
CCCUCCCCACCCG	chr1:46713574-46713972(+)$1	398	62	75	22.9814
ccucccccucccc	chr7:917372-917670(+)$1	298	125	138	24.6481
cccccuccucccc	chr12:81331374-81331671(-)$1	297	86	99	23.9999
GCCUCCCCUCACC	chr17:7308297-7308590(+)$1	293	25	38	22.8888
CCCUCCCCUUCCC	chr7:100172305-100172594(-)$1	289	179	192	27.7962
CCCACCCCUCCCU	chr1:2241288-2241567(+)$1	279	15	28	23.9074
CCCCUCCCUCCCC	chr12:58005535-58005830(+)$1	295	2	15	24.9259
CCUUCCCCUCCCC	chr16:29910713-29910958(-)$1	245	151	164	27.5185
uucuCCCCUCCCC	chr4:77996898-77997129(-)$1	231	90	103	22.7037
caccccccucccc	chr3:47459103-47459380(-)$1	277	16	29	23.9999
CCCACCCCUCCUC	chr17:4801169-4801419(+)$1	250	115	128	24.2777
ACCUCCCCUACCC	chr10:75568023-75568343(-)$1	320	18	31	23.0740
cccuccccuccuc	chr1:227179489-227179762(-)$1	273	49	62	27.2407
CCCCUCCCUCCCC	chr2:204305420-204305739(-)$1	319	140	153	24.9259
gccuccccucccc	chr18:29264396-29264722(-)$1	326	120	133	27.2407
CCCUCCCCUCCCC	chr11:10828769-10828978(-)$1	209	69	82	31.4999
CCCUUCCUUCCCC	chr9:140114656-140114882(-)$1	226	86	99	23.8148
cccuccccccccc	chr8:144807168-144807418(-)$1	250	71	84	27.3333
UCCUUCCCUCCCC	chr2:242694520-242694828(+)$1	308	120	133	23.6296
cccucccuucccc	chr17:80708556-80708795(+)$1	239	84	97	27.5185
ccacccccucccc	chr14:93118195-93118539(+)$1	344	39	52	24.4629
CCCUUCCCUCCAC	chr2:219081964-219082258(+)$1	294	73	86	23.6296
CCCACCCCUUCCC	chr20:307531-307776(+)$1	245	175	188	24.8333
CCCUCCUCUCACC	chr16:4394015-4394261(-)$1	246	67	80	22.5185
cccaccccacccc	chr1:153604195-153604505(+)$1	310	229	242	24.6481
UGCUCCCCUCCCC	chr2:159313868-159314116(+)$1	248	56	69	22.7037
CCCUCCCCUCCCC	chr15:75074885-75075126(+)$1	241	85	98	31.4999
cccuucccucccc	chr11:10830150-10830398(-)$1	248	32	45	27.7962
cccucccgucccc	chr17:28256945-28257206(-)$1	261	126	139	27.5185
CCCUCCCAACCCC	chr16:24942399-24942655(-)$1	256	237	250	23.5370
CCCGCCCCUUCCC	chr19:50819024-50819376(-)$1	352	69	82	24.5555
CCCACCCCUCCCC	chr12:132569031-132569307(+)$1	276	214	227	28.5370
cccgccccucccc	chr3:52444006-52444266(-)$1	260	42	55	28.2592
CCCUCCCCUCCCC	chr11:10828728-10828969(-)$1	241	60	73	31.4999

#otherMatches

#Struct PSSM
:::::::::::::	chr8:144357244-144357479(+)$1	235	15	28	27.3333
:::::::::::::	chr19:46283765-46284069(-)$1	304	117	130	26.8703
^^^^^^^^^^^^^	chr19:45323212-45323479(+)$1	267	44	57	23.6296
qqqqqqdddd444	chr17:29422023-29422294(+)$1	271	55	68	31.4999
FFFFFGGGGGGGd	chr8:22454919-22455198(+)$1	279	253	266	23.2592
ee:::::::::::	chr17:36904428-36904699(-)$1	271	56	69	31.4999
:::::::::::::	chr22:50683533-50683889(-)$1	356	125	138	22.6111
:::::::::::::	chr9:139942815-139943045(-)$1	230	37	50	24.3703
:::::::FFFFFF	chr2:48132746-48132993(-)$1	247	6	19	22.9814
:::::::::::::	chr2:65659210-65659530(-)$1	320	111	124	23.5370
ssssssssssccc	chr16:24942279-24942599(-)$1	320	181	194	23.5370
AKKCCCOOOOOOD	chrX:133119530-133119775(-)$1	245	85	98	24.3703
^^^^^^^^^^^^^	chr6:41567491-41567775(+)$1	284	86	99	22.4259
WWWWDDDD:::::	chr21:40177609-40177892(+)$1	283	18	31	26.9629
b::::::::::::	chr2:204305549-204305783(-)$1	234	184	197	24.9259
:::::::::::::	chr17:7311336-7311612(+)$1	276	23	36	23.8148
^^^^^^^^^^^^^	chr15:75074808-75075085(+)$1	277	162	175	31.4999
:::::::ccc&&&	chr11:2159862-2160084(-)$1	222	106	119	27.5185
a[iiiiiiiii[e	chr6:41567867-41568164(+)$1	297	42	55	23.1666
:::::DDDDZZZA	chr11:2159939-2160156(-)$1	217	178	191	27.5185
dddrrrrrrrrrd	chr1:46713574-46713972(+)$1	398	62	75	22.9814
eee:::::::::F	chr7:917372-917670(+)$1	298	125	138	24.6481
:::::::::::::	chr12:81331374-81331671(-)$1	297	86	99	23.9999
ddd::::::::::	chr17:7308297-7308590(+)$1	293	25	38	22.8888
3bb]ffffff:hh	chr7:100172305-100172594(-)$1	289	179	192	27.7962
:::::::ffffff	chr1:2241288-2241567(+)$1	279	15	28	23.9074
===========dd	chr12:58005535-58005830(+)$1	295	2	15	24.9259
^^^^^^^^^^^dd	chr16:29910713-29910958(-)$1	245	151	164	27.5185
::::::eeeee^^	chr4:77996898-77997129(-)$1	231	90	103	22.7037
e$$$$$dddd[dd	chr3:47459103-47459380(-)$1	277	16	29	23.9999
3eeeee:::::::	chr17:4801169-4801419(+)$1	250	115	128	24.2777
::::::::::::d	chr10:75568023-75568343(-)$1	320	18	31	23.0740
:::::::::::::	chr1:227179489-227179762(-)$1	273	49	62	27.2407
:::::::::::::	chr2:204305420-204305739(-)$1	319	140	153	24.9259
DDCCCOOOOOOBB	chr18:29264396-29264722(-)$1	326	120	133	27.2407
::::::::FFFFF	chr11:10828769-10828978(-)$1	209	69	82	31.4999
+++++++++++++	chr9:140114656-140114882(-)$1	226	86	99	23.8148
:::::JJJJJJJJ	chr8:144807168-144807418(-)$1	250	71	84	27.3333
FF:::::::::::	chr2:242694520-242694828(+)$1	308	120	133	23.6296
c::::::::::::	chr17:80708556-80708795(+)$1	239	84	97	27.5185
gg:::::::::::	chr14:93118195-93118539(+)$1	344	39	52	24.4629
b999999999eee	chr2:219081964-219082258(+)$1	294	73	86	23.6296
^^^^^^^^^^^^^	chr20:307531-307776(+)$1	245	175	188	24.8333
:::::::::::::	chr16:4394015-4394261(-)$1	246	67	80	22.5185
e"""ccc^^^^^^	chr1:153604195-153604505(+)$1	310	229	242	24.6481
iiuuuuuuuuuuu	chr2:159313868-159314116(+)$1	248	56	69	22.7037
^^^^^^^^^^^^^	chr15:75074885-75075126(+)$1	241	85	98	31.4999
:::::::DDDD{C	chr11:10830150-10830398(-)$1	248	32	45	27.7962
:::::::ddddss	chr17:28256945-28257206(-)$1	261	126	139	27.5185
ssssssssssccc	chr16:24942399-24942655(-)$1	256	237	250	23.5370
occc:::::::::	chr19:50819024-50819376(-)$1	352	69	82	24.5555
d::::::::::::	chr12:132569031-132569307(+)$1	276	214	227	28.5370
ggdddd)))))))	chr3:52444006-52444266(-)$1	260	42	55	28.2592
::::::::FFFFF	chr11:10828728-10828969(-)$1	241	60	73	31.4999

#DB
.............	chr8:144357244-144357479(+)$1	1	15	28	27.3333
.............	chr19:46283765-46284069(-)$1	1	117	130	26.8703
.............	chr19:45323212-45323479(+)$1	1	44	57	23.6296
......))))...	chr17:29422023-29422294(+)$1	1	55	68	31.4999
))))))))))))(	chr8:22454919-22455198(+)$1	1	253	266	23.2592
))...........	chr17:36904428-36904699(-)$1	1	56	69	31.4999
.............	chr22:50683533-50683889(-)$1	1	125	138	22.6111
.............	chr9:139942815-139943045(-)$1	1	37	50	24.3703
.......((((((	chr2:48132746-48132993(-)$1	1	6	19	22.9814
.............	chr2:65659210-65659530(-)$1	1	111	124	23.5370
..........)))	chr16:24942279-24942599(-)$1	1	181	194	23.5370
(..(((......(	chrX:133119530-133119775(-)$1	1	85	98	24.3703
.............	chr6:41567491-41567775(+)$1	1	86	99	22.4259
....((((.....	chr21:40177609-40177892(+)$1	1	18	31	26.9629
)............	chr2:204305549-204305783(-)$1	1	184	197	24.9259
.............	chr17:7311336-7311612(+)$1	1	23	36	23.8148
.............	chr15:75074808-75075085(+)$1	1	162	175	31.4999
.......(((...	chr11:2159862-2160084(-)$1	1	106	119	27.5185
(.(((((((((.(	chr6:41567867-41568164(+)$1	1	42	55	23.1666
.....))))...)	chr11:2159939-2160156(-)$1	1	178	191	27.5185
(((.........)	chr1:46713574-46713972(+)$1	1	62	75	22.9814
))).........(	chr7:917372-917670(+)$1	1	125	138	24.6481
.............	chr12:81331374-81331671(-)$1	1	86	99	23.9999
)))..........	chr17:7308297-7308590(+)$1	1	25	38	22.8888
.)).)))))).((	chr7:100172305-100172594(-)$1	1	179	192	27.7962
.......((((((	chr1:2241288-2241567(+)$1	1	15	28	23.9074
(((((((((((((	chr12:58005535-58005830(+)$1	1	2	15	24.9259
...........))	chr16:29910713-29910958(-)$1	1	151	164	27.5185
......(((((..	chr4:77996898-77997129(-)$1	1	90	103	22.7037
(.....((((.((	chr3:47459103-47459380(-)$1	1	16	29	23.9999
.))))).......	chr17:4801169-4801419(+)$1	1	115	128	24.2777
............(	chr10:75568023-75568343(-)$1	1	18	31	23.0740
.............	chr1:227179489-227179762(-)$1	1	49	62	27.2407
.............	chr2:204305420-204305739(-)$1	1	140	153	24.9259
(((((......((	chr18:29264396-29264722(-)$1	1	120	133	27.2407
........(((((	chr11:10828769-10828978(-)$1	1	69	82	31.4999
.............	chr9:140114656-140114882(-)$1	1	86	99	23.8148
.....((((((((	chr8:144807168-144807418(-)$1	1	71	84	27.3333
((...........	chr2:242694520-242694828(+)$1	1	120	133	23.6296
)............	chr17:80708556-80708795(+)$1	1	84	97	27.5185
))...........	chr14:93118195-93118539(+)$1	1	39	52	24.4629
).........)))	chr2:219081964-219082258(+)$1	1	73	86	23.6296
.............	chr20:307531-307776(+)$1	1	175	188	24.8333
.............	chr16:4394015-4394261(-)$1	1	67	80	22.5185
(...(((......	chr1:153604195-153604505(+)$1	1	229	242	24.6481
((...........	chr2:159313868-159314116(+)$1	1	56	69	22.7037
.............	chr15:75074885-75075126(+)$1	1	85	98	31.4999
.......((((.(	chr11:10830150-10830398(-)$1	1	32	45	27.7962
.......((((..	chr17:28256945-28257206(-)$1	1	126	139	27.5185
..........)))	chr16:24942399-24942655(-)$1	1	237	250	23.5370
.))).........	chr19:50819024-50819376(-)$1	1	69	82	24.5555
)............	chr12:132569031-132569307(+)$1	1	214	227	28.5370
((((((.......	chr3:52444006-52444266(-)$1	1	42	55	28.2592
........(((((	chr11:10828728-10828969(-)$1	1	60	73	31.4999

#PSSM
C : 0.46	c : 0.42	U : 0.03	G : 0.01	u : 0.01	A : 0.01	g : 0.01	
C : 0.51	c : 0.42	u : 0.01	a : 0.01	G : 0.01	
C : 0.48	c : 0.38	a : 0.03	u : 0.03	U : 0.03	G : 0.01	
U : 0.38	u : 0.31	c : 0.07	A : 0.07	C : 0.05	a : 0.03	g : 0.03	G : 0.01	
C : 0.44	c : 0.42	U : 0.11	u : 0.01	
C : 0.55	c : 0.38	a : 0.03	u : 0.01	
C : 0.53	c : 0.40	g : 0.03	U : 0.01	
C : 0.48	c : 0.37	g : 0.05	A : 0.03	U : 0.03	u : 0.01	
U : 0.48	u : 0.38	A : 0.05	a : 0.03	C : 0.01	c : 0.01	
C : 0.42	c : 0.42	U : 0.09	A : 0.03	u : 0.01	
C : 0.51	c : 0.40	A : 0.03	a : 0.01	g : 0.01	
C : 0.48	c : 0.40	A : 0.03	a : 0.01	G : 0.01	U : 0.01	u : 0.01	
C : 0.51	c : 0.42	a : 0.01	G : 0.01	U : 0.01	

#score	1385.2592592592578
#seq	54
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_transcript_m1_run1.nuc.txt

#NT
uauuu	chr2:42431576-42431848(+)$1	272	100	105	15.0000
UAUUU	chr2:54870420-54870676(+)$1	256	171	176	15.0000
UAUUU	chr3:133371930-133372204(-)$1	274	59	64	15.0000
UAUUU	chr1:57375785-57376109(+)$1	324	71	76	15.0000
UAUUU	chr10:27828455-27828749(+)$1	294	98	103	15.0000
UAUUU	chr15:25246936-25247238(+)$1	302	255	260	15.0000
UAUUU	chr2:152307945-152308212(+)$1	267	95	100	15.0000
UAUUU	chr3:113442985-113443330(-)$1	345	169	174	15.0000
UAUUU	chr10:21970317-21970637(+)$1	320	270	275	15.0000
UAUUU	chr2:178279653-178279973(+)$1	320	64	69	15.0000
uauuu	chr2:178305729-178306006(+)$1	277	77	82	15.0000
UAUUU	chr7:11082022-11082272(+)$1	250	55	60	15.0000
UAUUU	chr12:100955406-100955774(+)$1	368	61	66	15.0000
UAUUU	chr1:11084917-11085149(+)$1	232	7	12	15.0000
UAUUU	chr2:71636352-71636615(+)$1	263	28	33	15.0000
uauuu	chr6:17673751-17674030(-)$1	279	209	214	15.0000
UAUUU	chr15:35271345-35271568(-)$1	223	18	23	15.0000
UAUUU	chr3:137964189-137964520(+)$1	331	192	197	15.0000
UAUUU	chr10:70515765-70515992(+)$1	227	220	225	15.0000
UAUUU	chr15:25241605-25241896(+)$1	291	27	32	15.0000
UAUUU	chr22:32883886-32884185(+)$1	299	266	271	15.0000
UAUUU	chr3:145807185-145807415(-)$1	230	60	65	15.0000
uauuu	chr3:145795419-145795694(-)$1	275	50	55	15.0000
UAUUU	chr2:114476534-114476800(-)$1	266	33	38	15.0000
UAUUU	chr1:207940575-207940808(+)$1	233	27	32	15.0000
UAUUU	chr4:77067652-77067952(-)$1	300	211	216	15.0000
UAUUU	chr12:9243312-9243532(-)$1	220	34	39	15.0000
UAUUU	chr5:118869278-118869597(+)$1	319	151	156	15.0000
UAUUU	chr10:5005801-5006071(+)$1	270	79	84	15.0000
UAUUU	chr5:145862731-145862965(+)$1	234	131	136	15.0000
UAUUU	chr12:102108371-102108644(+)$1	273	238	243	15.0000
UAUUU	chr5:167975690-167975935(-)$1	245	158	163	15.0000
UAUUU	chr4:22399661-22399904(-)$1	243	129	134	15.0000
UAUUU	chr14:50241332-50241682(+)$1	350	152	157	15.0000
uauuu	chr1:97241124-97241425(+)$1	301	56	61	15.0000
UAUUU	chr12:69663164-69663392(+)$1	228	1	6	15.0000
UAUUU	chr10:93579378-93579637(+)$1	259	20	25	15.0000
UAUUU	chr10:76159069-76159323(+)$1	254	88	93	15.0000
uauuu	chr16:50105934-50106234(+)$1	300	14	19	15.0000
UAUUU	chr6:145103241-145103495(+)$1	254	27	32	15.0000
UAUUU	chr6:45289226-45289532(-)$1	306	189	194	15.0000
UAUUU	chr17:29550270-29550545(+)$1	275	13	18	15.0000
UAUUU	chr15:101113068-101113283(-)$1	215	34	39	15.0000
UAUUU	chr3:27416031-27416282(-)$1	251	92	97	15.0000
UAUUU	chr2:61520636-61520923(-)$1	287	86	91	15.0000
UAUUU	chr2:20484616-20484890(-)$1	274	65	70	15.0000
UAUUU	chr1:40679447-40679745(+)$1	298	213	218	15.0000
UAUUU	chr2:166786183-166786469(-)$1	286	47	52	15.0000
UAUUU	chr1:11084682-11084938(+)$1	256	242	247	15.0000
UAUUU	chr1:212516945-212517242(+)$1	297	87	92	15.0000
UAUUU	chr10:76074740-76075000(+)$1	260	53	58	15.0000
UAUUU	chr2:166780863-166781147(-)$1	284	79	84	15.0000
UAUUU	chr4:15608435-15608726(-)$1	291	13	18	15.0000
UAUUU	chr12:103237877-103238132(-)$1	255	104	109	15.0000
UAUUU	chr2:48030276-48030634(+)$1	358	139	144	15.0000
UAUUU	chr3:150276213-150276500(+)$1	287	58	63	15.0000
UAUUU	chr5:179047204-179047439(-)$1	235	129	134	15.0000
uauuu	chr1:94925334-94925673(+)$1	339	328	333	15.0000
UAUUU	chr6:161472792-161473042(+)$1	250	220	225	15.0000
UAUUU	chr2:242194233-242194528(-)$1	295	173	178	15.0000
UAUUU	chr13:49720358-49720717(+)$1	359	148	153	15.0000
UAUUU	chr14:60592694-60593093(+)$1	399	133	138	15.0000
uauuu	chr14:77490945-77491267(-)$1	322	68	73	15.0000
uauUU	chr11:61039212-61039519(-)$1	307	78	83	15.0000
UAUUU	chr3:176848092-176848439(-)$1	347	156	161	15.0000
uauuu	chr18:2726483-2726753(+)$1	270	46	51	15.0000
UAUUU	chr17:36361803-36362060(-)$1	257	60	65	15.0000
UAUUU	chr3:37323255-37323516(+)$1	261	155	160	15.0000
uauuu	chr7:143594749-143595235(-)$1	486	77	82	15.0000
UAUUU	chr13:92006241-92006509(+)$1	268	72	77	15.0000
UAUUU	chr10:121340532-121340755(-)$1	223	75	80	15.0000
UAUUU	chr10:18970288-18970570(+)$1	282	84	89	15.0000
UAUUU	chr2:179995790-179996076(-)$1	286	84	89	15.0000
UAUUU	chr12:69216943-69217246(+)$1	303	106	111	15.0000
uauuu	chr9:21874263-21874553(+)$1	290	1	6	15.0000
UAUUU	chr17:56082453-56082687(-)$1	234	101	106	15.0000

#otherMatches

#Struct PSSM
pccc]	chr18:23617116-23617382(-)$1	266	61	66	15.0000
:::::	chr2:42431576-42431848(+)$1	272	100	105	15.0000
cccpp	chr2:54870420-54870676(+)$1	256	171	176	15.0000
dFFFF	chr3:133371930-133372204(-)$1	274	59	64	15.0000
d333d	chr1:57375785-57376109(+)$1	324	71	76	15.0000
JJJJJ	chr10:27828455-27828749(+)$1	294	98	103	15.0000
JJJJJ	chr15:25246936-25247238(+)$1	302	255	260	15.0000
xxxxi	chr2:152307945-152308212(+)$1	267	95	100	15.0000
:FFFF	chr3:113442985-113443330(-)$1	345	169	174	15.0000
rrrrr	chr10:21970317-21970637(+)$1	320	270	275	15.0000
mmmmf	chr2:178279653-178279973(+)$1	320	64	69	15.0000
=====	chr2:178305729-178306006(+)$1	277	77	82	15.0000
ttttt	chr7:11082022-11082272(+)$1	250	55	60	15.0000
JJJJd	chr12:100955406-100955774(+)$1	368	61	66	15.0000
ee!!d	chr1:11084917-11085149(+)$1	232	7	12	15.0000
OOOOO	chr2:71636352-71636615(+)$1	263	28	33	15.0000
555ee	chr6:17673751-17674030(-)$1	279	209	214	15.0000
cc[dd	chr15:35271345-35271568(-)$1	223	18	23	15.0000
gg:::	chr3:137964189-137964520(+)$1	331	192	197	15.0000
HHHHH	chr10:70515765-70515992(+)$1	227	220	225	15.0000
fffff	chr15:25241605-25241896(+)$1	291	27	32	15.0000
hhh22	chr22:32883886-32884185(+)$1	299	266	271	15.0000
f"""e	chr3:145807185-145807415(-)$1	230	60	65	15.0000
bb###	chr3:145795419-145795694(-)$1	275	50	55	15.0000
++eee	chr2:114476534-114476800(-)$1	266	33	38	15.0000
:::::	chr1:207940575-207940808(+)$1	233	27	32	15.0000
!bb!!	chr4:77067652-77067952(-)$1	300	211	216	15.0000
^^^^^	chr12:9243312-9243532(-)$1	220	34	39	15.0000
mmmmb	chr5:118869278-118869597(+)$1	319	151	156	15.0000
333hh	chr10:5005801-5006071(+)$1	270	79	84	15.0000
iiiii	chr5:145862731-145862965(+)$1	234	131	136	15.0000
ffffm	chr12:102108371-102108644(+)$1	273	238	243	15.0000
ggggg	chr5:167975690-167975935(-)$1	245	158	163	15.0000
((ggg	chr4:22399661-22399904(-)$1	243	129	134	15.0000
qqqqq	chr14:50241332-50241682(+)$1	350	152	157	15.0000
JJJJJ	chr1:97241124-97241425(+)$1	301	56	61	15.0000
:::::	chr12:69663164-69663392(+)$1	228	1	6	15.0000
:gggg	chr10:93579378-93579637(+)$1	259	20	25	15.0000
:::::	chr10:76159069-76159323(+)$1	254	88	93	15.0000
{GGGG	chr16:50105934-50106234(+)$1	300	14	19	15.0000
::::f	chr6:145103241-145103495(+)$1	254	27	32	15.0000
fffff	chr6:45289226-45289532(-)$1	306	189	194	15.0000
QQQQQ	chr17:29550270-29550545(+)$1	275	13	18	15.0000
:::::	chr15:101113068-101113283(-)$1	215	34	39	15.0000
:::::	chr3:27416031-27416282(-)$1	251	92	97	15.0000
iiiii	chr2:61520636-61520923(-)$1	287	86	91	15.0000
fffff	chr2:20484616-20484890(-)$1	274	65	70	15.0000
HHFFF	chr1:40679447-40679745(+)$1	298	213	218	15.0000
DDQQQ	chr2:166786183-166786469(-)$1	286	47	52	15.0000
E}FFF	chr1:11084682-11084938(+)$1	256	242	247	15.0000
cc333	chr1:212516945-212517242(+)$1	297	87	92	15.0000
"""hh	chr10:76074740-76075000(+)$1	260	53	58	15.0000
::hhh	chr2:166780863-166781147(-)$1	284	79	84	15.0000
BBKKF	chr4:15608435-15608726(-)$1	291	13	18	15.0000
HHHHH	chr12:103237877-103238132(-)$1	255	104	109	15.0000
DD}CC	chr2:48030276-48030634(+)$1	358	139	144	15.0000
oooog	chr3:150276213-150276500(+)$1	287	58	63	15.0000
=====	chr5:179047204-179047439(-)$1	235	129	134	15.0000
fffff	chr1:94925334-94925673(+)$1	339	328	333	15.0000
:::::	chr6:161472792-161473042(+)$1	250	220	225	15.0000
:::GG	chr2:242194233-242194528(-)$1	295	173	178	15.0000
rrrrr	chr13:49720358-49720717(+)$1	359	148	153	15.0000
d]fff	chr14:60592694-60593093(+)$1	399	133	138	15.0000
2gggg	chr14:77490945-77491267(-)$1	322	68	73	15.0000
=====	chr11:61039212-61039519(-)$1	307	78	83	15.0000
f[ccc	chr3:176848092-176848439(-)$1	347	156	161	15.0000
eeeee	chr18:2726483-2726753(+)$1	270	46	51	15.0000
=====	chr17:36361803-36362060(-)$1	257	60	65	15.0000
]dddd	chr3:37323255-37323516(+)$1	261	155	160	15.0000
fffff	chr7:143594749-143595235(-)$1	486	77	82	15.0000
uuggg	chr13:92006241-92006509(+)$1	268	72	77	15.0000
:::::	chr10:121340532-121340755(-)$1	223	75	80	15.0000
^^^^^	chr10:18970288-18970570(+)$1	282	84	89	15.0000
d''''	chr2:179995790-179996076(-)$1	286	84	89	15.0000
!cccp	chr12:69216943-69217246(+)$1	303	106	111	15.0000
:::::	chr9:21874263-21874553(+)$1	290	1	6	15.0000
qqqqq	chr17:56082453-56082687(-)$1	234	101	106	15.0000

#DB
.))).	chr18:23617116-23617382(-)$1	1	61	66	15.0000
.....	chr2:42431576-42431848(+)$1	1	100	105	15.0000
(((..	chr2:54870420-54870676(+)$1	1	171	176	15.0000
)((((	chr3:133371930-133372204(-)$1	1	59	64	15.0000
)...)	chr1:57375785-57376109(+)$1	1	71	76	15.0000
(((((	chr10:27828455-27828749(+)$1	1	98	103	15.0000
)))))	chr15:25246936-25247238(+)$1	1	255	260	15.0000
....)	chr2:152307945-152308212(+)$1	1	95	100	15.0000
.((((	chr3:113442985-113443330(-)$1	1	169	174	15.0000
.....	chr10:21970317-21970637(+)$1	1	270	275	15.0000
....)	chr2:178279653-178279973(+)$1	1	64	69	15.0000
(((((	chr2:178305729-178306006(+)$1	1	77	82	15.0000
.....	chr7:11082022-11082272(+)$1	1	55	60	15.0000
(((((	chr12:100955406-100955774(+)$1	1	61	66	15.0000
((..(	chr1:11084917-11085149(+)$1	1	7	12	15.0000
.....	chr2:71636352-71636615(+)$1	1	28	33	15.0000
...))	chr6:17673751-17674030(-)$1	1	209	214	15.0000
((.((	chr15:35271345-35271568(-)$1	1	18	23	15.0000
))...	chr3:137964189-137964520(+)$1	1	192	197	15.0000
)))))	chr10:70515765-70515992(+)$1	1	220	225	15.0000
(((((	chr15:25241605-25241896(+)$1	1	27	32	15.0000
)))..	chr22:32883886-32884185(+)$1	1	266	271	15.0000
(...(	chr3:145807185-145807415(-)$1	1	60	65	15.0000
((...	chr3:145795419-145795694(-)$1	1	50	55	15.0000
..(((	chr2:114476534-114476800(-)$1	1	33	38	15.0000
.....	chr1:207940575-207940808(+)$1	1	27	32	15.0000
.((..	chr4:77067652-77067952(-)$1	1	211	216	15.0000
.....	chr12:9243312-9243532(-)$1	1	34	39	15.0000
....)	chr5:118869278-118869597(+)$1	1	151	156	15.0000
...))	chr10:5005801-5006071(+)$1	1	79	84	15.0000
(((((	chr5:145862731-145862965(+)$1	1	131	136	15.0000
((((.	chr12:102108371-102108644(+)$1	1	238	243	15.0000
)))((	chr5:167975690-167975935(-)$1	1	158	163	15.0000
..(((	chr4:22399661-22399904(-)$1	1	129	134	15.0000
.....	chr14:50241332-50241682(+)$1	1	152	157	15.0000
(((((	chr1:97241124-97241425(+)$1	1	56	61	15.0000
.....	chr12:69663164-69663392(+)$1	1	1	6	15.0000
.((((	chr10:93579378-93579637(+)$1	1	20	25	15.0000
.....	chr10:76159069-76159323(+)$1	1	88	93	15.0000
.((((	chr16:50105934-50106234(+)$1	1	14	19	15.0000
....(	chr6:145103241-145103495(+)$1	1	27	32	15.0000
(((((	chr6:45289226-45289532(-)$1	1	189	194	15.0000
.....	chr17:29550270-29550545(+)$1	1	13	18	15.0000
.....	chr15:101113068-101113283(-)$1	1	34	39	15.0000
.....	chr3:27416031-27416282(-)$1	1	92	97	15.0000
(((((	chr2:61520636-61520923(-)$1	1	86	91	15.0000
)))))	chr2:20484616-20484890(-)$1	1	65	70	15.0000
)))))	chr1:40679447-40679745(+)$1	1	213	218	15.0000
((...	chr2:166786183-166786469(-)$1	1	47	52	15.0000
).)))	chr1:11084682-11084938(+)$1	1	242	247	15.0000
))...	chr1:212516945-212517242(+)$1	1	87	92	15.0000
...((	chr10:76074740-76075000(+)$1	1	53	58	15.0000
..(((	chr2:166780863-166781147(-)$1	1	79	84	15.0000
((..(	chr4:15608435-15608726(-)$1	1	13	18	15.0000
(((((	chr12:103237877-103238132(-)$1	1	104	109	15.0000
)).))	chr2:48030276-48030634(+)$1	1	139	144	15.0000
....)	chr3:150276213-150276500(+)$1	1	58	63	15.0000
)))))	chr5:179047204-179047439(-)$1	1	129	134	15.0000
)))))	chr1:94925334-94925673(+)$1	1	328	333	15.0000
.....	chr6:161472792-161473042(+)$1	1	220	225	15.0000
...((	chr2:242194233-242194528(-)$1	1	173	178	15.0000
.....	chr13:49720358-49720717(+)$1	1	148	153	15.0000
).)))	chr14:60592694-60593093(+)$1	1	133	138	15.0000
.))))	chr14:77490945-77491267(-)$1	1	68	73	15.0000
(((((	chr11:61039212-61039519(-)$1	1	78	83	15.0000
(.(((	chr3:176848092-176848439(-)$1	1	156	161	15.0000
(((((	chr18:2726483-2726753(+)$1	1	46	51	15.0000
(((((	chr17:36361803-36362060(-)$1	1	60	65	15.0000
.))))	chr3:37323255-37323516(+)$1	1	155	160	15.0000
)))))	chr7:143594749-143595235(-)$1	1	77	82	15.0000
..)))	chr13:92006241-92006509(+)$1	1	72	77	15.0000
.....	chr10:121340532-121340755(-)$1	1	75	80	15.0000
.....	chr10:18970288-18970570(+)$1	1	84	89	15.0000
(....	chr2:179995790-179996076(-)$1	1	84	89	15.0000
.(((.	chr12:69216943-69217246(+)$1	1	106	111	15.0000
.....	chr9:21874263-21874553(+)$1	1	1	6	15.0000
.....	chr17:56082453-56082687(-)$1	1	101	106	15.0000

#PSSM
U : 0.83	u : 0.16	
A : 0.83	a : 0.16	
U : 0.83	u : 0.16	
U : 0.84	u : 0.15	
U : 0.84	u : 0.15	

#score	1155.0000000000002
#seq	77
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105PMR_SBDS_transcript_m3_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
::::::::BB{FFFFFF:::::::::::eeeee[bbmmmmbbeeeee:::::::eeeeeggggggg"""bb!!ccc$$$$$bb[bb"""cccnnnnnccc4444bb]bb333ccc]bb333ggggggg]eeeee:::::::::dddd[ddddqqqqqqqqdddd]dddd:::::::::eeeee[gggggggbb[cccooooooccc]bb]ggggggg22e	chr19:893454-893690(+)$1	236	1	221	660.0000

#DB
........((.((((((...........(((((.((....))))))).......((((((((((((...((..(((.....((.((...(((.....)))....)).))...))).))...))))))).))))).........((((.((((........)))).)))).........(((((.(((((((((.(((......))).)).)))))))..)	chr19:893454-893690(+)$1	1	1	221	660.0000

#PSSM
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	

#score	660.0
#seq	1
#width	220
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_transcript_m1_run2.nuc.txt

#NT
GGGC	chr1:109642882-109643085(+)$1	203	146	150	11.9999
GGGC	chr22:49974904-49975194(-)$1	290	38	42	11.9999
GGGC	chr16:88588992-88589246(+)$1	254	123	127	11.9999
GGGC	chr16:89367059-89367310(-)$1	251	1	5	11.9999
GGGC	chr9:139559630-139559918(+)$1	288	1	5	11.9999
gggc	chr13:92000575-92000842(+)$1	267	6	10	11.9999
GGGC	chr19:54971699-54971951(+)$1	252	40	44	11.9999
GGGC	chr2:97534561-97534814(-)$1	253	211	215	11.9999
GGGC	chr19:4037882-4038140(+)$1	258	34	38	11.9999
GGGC	chrX:20154363-20154621(-)$1	258	229	233	11.9999
GGGC	chr19:4034957-4035228(+)$1	271	82	86	11.9999
GGGC	chr13:114563512-114563729(-)$1	217	26	30	11.9999
GGGC	chr8:1780281-1780532(+)$1	251	29	33	11.9999
GGGC	chrX:152956442-152956714(+)$1	272	22	26	11.9999
GGGC	chr1:31380693-31380950(-)$1	257	85	89	11.9999
GGGC	chr19:2425991-2426267(-)$1	276	18	22	11.9999
GGGC	chr9:136132795-136133015(-)$1	220	8	12	11.9999
GGGC	chrX:135961321-135961533(-)$1	212	80	84	11.9999
GGGC	chr11:47377093-47377383(-)$1	290	157	161	11.9999
GGGC	chr22:49961653-49961897(-)$1	244	186	190	11.9999
GGGC	chr20:17943369-17943606(-)$1	237	3	7	11.9999
GGGC	chr19:13262235-13262464(+)$1	229	28	32	11.9999
GGGC	chr19:34874543-34874817(+)$1	274	69	73	11.9999
GGGC	chr12:133138871-133139130(+)$1	259	73	77	11.9999
GGGC	chr16:89649584-89649820(+)$1	236	4	8	11.9999
GGGC	chr5:651408-651749(+)$1	341	172	176	11.9999
GGGC	chr13:92000507-92000746(+)$1	239	12	16	11.9999
GGGC	chr4:78740390-78740673(-)$1	283	4	8	11.9999
GGGC	chr1:988309-988573(+)$1	264	163	167	11.9999
GGGC	chr16:88582989-88583224(+)$1	235	100	104	11.9999
GGGC	chr11:811663-811872(+)$1	209	110	114	11.9999
GGGC	chr5:649119-649385(+)$1	266	1	5	11.9999
gggc	chr16:88580965-88581214(+)$1	249	7	11	11.9999
GGGC	chr12:112035314-112035563(-)$1	249	60	64	11.9999
GGGC	chr11:2005480-2005741(+)$1	261	25	29	11.9999
GGGC	chr1:22155800-22156052(-)$1	252	104	108	11.9999
GGGC	chr19:2201463-2201729(+)$1	266	21	25	11.9999
GGGC	chr19:1415698-1415950(+)$1	252	125	129	11.9999
GGGC	chr8:1780034-1780333(+)$1	299	52	56	11.9999
GGGC	chr22:50036172-50036399(-)$1	227	222	226	11.9999
GGGC	chr20:31172110-31172387(-)$1	277	9	13	11.9999
GGGC	chr11:586307-586628(+)$1	321	203	207	11.9999
gggc	chr9:136135878-136136115(-)$1	237	189	193	11.9999
GGGC	chr11:65194874-65195094(+)$1	220	47	51	11.9999
GGGC	chr19:34874202-34874472(+)$1	270	97	101	11.9999
GGGC	chr10:43902711-43902979(-)$1	268	59	63	11.9999
GGGC	chr2:97554243-97554510(-)$1	267	161	165	11.9999
GGGC	chr22:50049938-50050251(-)$1	313	97	101	11.9999
GGGC	chr1:109642875-109643082(+)$1	207	153	157	11.9999
GGGC	chr5:154135292-154135583(+)$1	291	11	15	11.9999
GGGC	chr1:32827795-32828062(-)$1	267	0	4	11.9999
GGGC	chr4:78740041-78740317(-)$1	276	38	42	11.9999
GGGC	chr19:10407088-10407332(+)$1	244	29	33	11.9999
GGGC	chr21:44479322-44479562(-)$1	240	9	13	11.9999
GGGC	chr1:16174697-16174964(+)$1	267	66	70	11.9999
GGGC	chr16:85659300-85659564(+)$1	264	34	38	11.9999
GGGC	chr3:128214508-128214768(+)$1	260	14	18	11.9999
GGGC	chr22:50023541-50023780(-)$1	239	32	36	11.9999
GGGC	chr10:72503663-72503918(+)$1	255	75	79	11.9999
GGGC	chr1:109642841-109643053(+)$1	212	187	191	11.9999
GGGC	chr3:186648354-186648607(+)$1	253	67	71	11.9999
GGGC	chr1:26799106-26799359(+)$1	253	25	29	11.9999
gggc	chr13:92000344-92000614(+)$1	270	62	66	11.9999
GGGC	chr1:109642836-109643041(+)$1	205	192	196	11.9999
gggc	chr19:1652298-1652554(-)$1	256	18	22	11.9999
GGGC	chr2:10538775-10539081(+)$1	306	165	169	11.9999
GGGC	chr11:93454887-93455090(+)$1	203	75	79	11.9999
GGGC	chr19:827452-827770(+)$1	318	40	44	11.9999
GGGC	chr7:5569465-5569798(-)$1	333	14	18	11.9999
GGGC	chr2:203157675-203157880(+)$1	205	91	95	11.9999
GGGC	chr17:80543629-80543895(+)$1	266	31	35	11.9999
GGGC	chr19:1410903-1411144(+)$1	241	10	14	11.9999
gggC	chr19:2425550-2425840(-)$1	290	45	49	11.9999
GGGC	chr21:47612164-47612445(-)$1	281	98	102	11.9999
GGGC	chr9:136131998-136132231(-)$1	233	2	6	11.9999
GGGC	chr19:24187170-24187408(-)$1	238	56	60	11.9999
GGGC	chr6:31504067-31504301(-)$1	234	41	45	11.9999
GGGC	chr19:1408214-1408475(+)$1	261	69	73	11.9999
GGGC	chr2:97559128-97559380(-)$1	252	107	111	11.9999
GGGC	chr5:138614374-138614611(+)$1	237	223	227	11.9999
GGGC	chr21:9826125-9826351(+)$1	226	21	25	11.9999
gggc	chr20:35483494-35483746(-)$1	252	26	30	11.9999
GGGC	chr1:228328116-228328391(+)$1	275	81	85	11.9999
GGGC	chr1:109642909-109643123(+)$1	214	119	123	11.9999
GGGC	chr22:50039426-50039671(-)$1	245	65	69	11.9999
GGGC	chr22:49993579-49993824(-)$1	245	25	29	11.9999
GGGC	chr9:139720745-139720989(+)$1	244	82	86	11.9999
GGGC	chr19:1410343-1410573(+)$1	230	44	48	11.9999
GGGC	chr21:38445860-38446107(+)$1	247	229	233	11.9999
GGGC	chr12:123994399-123994704(-)$1	305	21	25	11.9999
GGGC	chr19:2270411-2270656(+)$1	245	49	53	11.9999
GGGC	chr22:50024771-50025014(-)$1	243	113	117	11.9999

#otherMatches

#Struct PSSM
EGGG	chr12:133272022-133272290(+)$1	268	12	16	11.9999
dddd	chr1:109642882-109643085(+)$1	203	146	150	11.9999
ddd:	chr22:49974904-49975194(-)$1	290	38	42	11.9999
e]ee	chr16:88588992-88589246(+)$1	254	123	127	11.9999
b!!f	chr16:89367059-89367310(-)$1	251	1	5	11.9999
EEEE	chr9:139559630-139559918(+)$1	288	1	5	11.9999
DDEE	chr13:92000575-92000842(+)$1	267	6	10	11.9999
gggg	chr19:54971699-54971951(+)$1	252	40	44	11.9999
iiii	chr2:97534561-97534814(-)$1	253	211	215	11.9999
f[cc	chr19:4037882-4038140(+)$1	258	34	38	11.9999
dddd	chrX:20154363-20154621(-)$1	258	229	233	11.9999
2ggg	chr19:4034957-4035228(+)$1	271	82	86	11.9999
ffff	chr13:114563512-114563729(-)$1	217	26	30	11.9999
FFFF	chr8:1780281-1780532(+)$1	251	29	33	11.9999
FFFF	chrX:152956442-152956714(+)$1	272	22	26	11.9999
nnff	chr1:31380693-31380950(-)$1	257	85	89	11.9999
ddd[	chr19:2425991-2426267(-)$1	276	18	22	11.9999
ggg[	chr9:136132795-136133015(-)$1	220	8	12	11.9999
gggg	chrX:135961321-135961533(-)$1	212	80	84	11.9999
ddd!	chr11:47377093-47377383(-)$1	290	157	161	11.9999
cc[c	chr22:49961653-49961897(-)$1	244	186	190	11.9999
EEEC	chr20:17943369-17943606(-)$1	237	3	7	11.9999
gggg	chr19:13262235-13262464(+)$1	229	28	32	11.9999
b[dd	chr19:34874543-34874817(+)$1	274	69	73	11.9999
d[hh	chr12:133138871-133139130(+)$1	259	73	77	11.9999
bfff	chr16:89649584-89649820(+)$1	236	4	8	11.9999
dmmm	chr5:651408-651749(+)$1	341	172	176	11.9999
c!!b	chr13:92000507-92000746(+)$1	239	12	16	11.9999
B{BB	chr4:78740390-78740673(-)$1	283	4	8	11.9999
eeee	chr1:988309-988573(+)$1	264	163	167	11.9999
ccc!	chr16:88582989-88583224(+)$1	235	100	104	11.9999
""bb	chr11:811663-811872(+)$1	209	110	114	11.9999
A{CC	chr5:649119-649385(+)$1	266	1	5	11.9999
dddd	chr16:88580965-88581214(+)$1	249	7	11	11.9999
eeee	chr12:112035314-112035563(-)$1	249	60	64	11.9999
FFF{	chr11:2005480-2005741(+)$1	261	25	29	11.9999
dddd	chr1:22155800-22156052(-)$1	252	104	108	11.9999
::HH	chr19:2201463-2201729(+)$1	266	21	25	11.9999
ffff	chr19:1415698-1415950(+)$1	252	125	129	11.9999
nfff	chr8:1780034-1780333(+)$1	299	52	56	11.9999
YCCC	chr22:50036172-50036399(-)$1	227	222	226	11.9999
:GGG	chr20:31172110-31172387(-)$1	277	9	13	11.9999
ssss	chr11:586307-586628(+)$1	321	203	207	11.9999
gggl	chr9:136135878-136136115(-)$1	237	189	193	11.9999
dddd	chr11:65194874-65195094(+)$1	220	47	51	11.9999
nccc	chr19:34874202-34874472(+)$1	270	97	101	11.9999
iiii	chr10:43902711-43902979(-)$1	268	59	63	11.9999
ddd]	chr2:97554243-97554510(-)$1	267	161	165	11.9999
eeee	chr22:50049938-50050251(-)$1	313	97	101	11.9999
B}CC	chr1:109642875-109643082(+)$1	207	153	157	11.9999
{CCC	chr5:154135292-154135583(+)$1	291	11	15	11.9999
ffff	chr1:32827795-32828062(-)$1	267	0	4	11.9999
iiii	chr4:78740041-78740317(-)$1	276	38	42	11.9999
eeee	chr19:10407088-10407332(+)$1	244	29	33	11.9999
hhcc	chr21:44479322-44479562(-)$1	240	9	13	11.9999
eeee	chr1:16174697-16174964(+)$1	267	66	70	11.9999
cc[c	chr16:85659300-85659564(+)$1	264	34	38	11.9999
leee	chr3:128214508-128214768(+)$1	260	14	18	11.9999
gg:H	chr22:50023541-50023780(-)$1	239	32	36	11.9999
2hhh	chr10:72503663-72503918(+)$1	255	75	79	11.9999
B}A}	chr1:109642841-109643053(+)$1	212	187	191	11.9999
hhh[	chr3:186648354-186648607(+)$1	253	67	71	11.9999
a[cc	chr1:26799106-26799359(+)$1	253	25	29	11.9999
FFFF	chr13:92000344-92000614(+)$1	270	62	66	11.9999
A}CC	chr1:109642836-109643041(+)$1	205	192	196	11.9999
i[bb	chr19:1652298-1652554(-)$1	256	18	22	11.9999
Gccc	chr2:10538775-10539081(+)$1	306	165	169	11.9999
JJJJ	chr11:93454887-93455090(+)$1	203	75	79	11.9999
eeee	chr19:827452-827770(+)$1	318	40	44	11.9999
]eee	chr7:5569465-5569798(-)$1	333	14	18	11.9999
dddd	chr2:203157675-203157880(+)$1	205	91	95	11.9999
fffn	chr17:80543629-80543895(+)$1	266	31	35	11.9999
GGff	chr19:1410903-1411144(+)$1	241	10	14	11.9999
cccc	chr19:2425550-2425840(-)$1	290	45	49	11.9999
eee:	chr21:47612164-47612445(-)$1	281	98	102	11.9999
::GG	chr9:136131998-136132231(-)$1	233	2	6	11.9999
dlll	chr19:24187170-24187408(-)$1	238	56	60	11.9999
DD:f	chr6:31504067-31504301(-)$1	234	41	45	11.9999
CCCJ	chr19:1408214-1408475(+)$1	261	69	73	11.9999
444i	chr2:97559128-97559380(-)$1	252	107	111	11.9999
hhhh	chr5:138614374-138614611(+)$1	237	223	227	11.9999
eeee	chr21:9826125-9826351(+)$1	226	21	25	11.9999
eddd	chr20:35483494-35483746(-)$1	252	26	30	11.9999
dddd	chr1:228328116-228328391(+)$1	275	81	85	11.9999
cccm	chr1:109642909-109643123(+)$1	214	119	123	11.9999
c[cc	chr22:50039426-50039671(-)$1	245	65	69	11.9999
GGGG	chr22:49993579-49993824(-)$1	245	25	29	11.9999
eeee	chr9:139720745-139720989(+)$1	244	82	86	11.9999
eeee	chr19:1410343-1410573(+)$1	230	44	48	11.9999
GGGG	chr21:38445860-38446107(+)$1	247	229	233	11.9999
====	chr12:123994399-123994704(-)$1	305	21	25	11.9999
CC{G	chr19:2270411-2270656(+)$1	245	49	53	11.9999
{BBL	chr22:50024771-50025014(-)$1	243	113	117	11.9999

#DB
((((	chr12:133272022-133272290(+)$1	1	12	16	11.9999
))))	chr1:109642882-109643085(+)$1	1	146	150	11.9999
))).	chr22:49974904-49975194(-)$1	1	38	42	11.9999
).))	chr16:88588992-88589246(+)$1	1	123	127	11.9999
(..(	chr16:89367059-89367310(-)$1	1	1	5	11.9999
((((	chr9:139559630-139559918(+)$1	1	1	5	11.9999
((((	chr13:92000575-92000842(+)$1	1	6	10	11.9999
((((	chr19:54971699-54971951(+)$1	1	40	44	11.9999
))))	chr2:97534561-97534814(-)$1	1	211	215	11.9999
(.((	chr19:4037882-4038140(+)$1	1	34	38	11.9999
((((	chrX:20154363-20154621(-)$1	1	229	233	11.9999
.)))	chr19:4034957-4035228(+)$1	1	82	86	11.9999
((((	chr13:114563512-114563729(-)$1	1	26	30	11.9999
((((	chr8:1780281-1780532(+)$1	1	29	33	11.9999
((((	chrX:152956442-152956714(+)$1	1	22	26	11.9999
..))	chr1:31380693-31380950(-)$1	1	85	89	11.9999
(((.	chr19:2425991-2426267(-)$1	1	18	22	11.9999
(((.	chr9:136132795-136133015(-)$1	1	8	12	11.9999
))))	chrX:135961321-135961533(-)$1	1	80	84	11.9999
(((.	chr11:47377093-47377383(-)$1	1	157	161	11.9999
((.(	chr22:49961653-49961897(-)$1	1	186	190	11.9999
((((	chr20:17943369-17943606(-)$1	1	3	7	11.9999
))))	chr19:13262235-13262464(+)$1	1	28	32	11.9999
(.((	chr19:34874543-34874817(+)$1	1	69	73	11.9999
(.((	chr12:133138871-133139130(+)$1	1	73	77	11.9999
((((	chr16:89649584-89649820(+)$1	1	4	8	11.9999
(...	chr5:651408-651749(+)$1	1	172	176	11.9999
(..(	chr13:92000507-92000746(+)$1	1	12	16	11.9999
(.((	chr4:78740390-78740673(-)$1	1	4	8	11.9999
((((	chr1:988309-988573(+)$1	1	163	167	11.9999
(((.	chr16:88582989-88583224(+)$1	1	100	104	11.9999
..((	chr11:811663-811872(+)$1	1	110	114	11.9999
(.((	chr5:649119-649385(+)$1	1	1	5	11.9999
((((	chr16:88580965-88581214(+)$1	1	7	11	11.9999
((((	chr12:112035314-112035563(-)$1	1	60	64	11.9999
(((.	chr11:2005480-2005741(+)$1	1	25	29	11.9999
))))	chr1:22155800-22156052(-)$1	1	104	108	11.9999
..((	chr19:2201463-2201729(+)$1	1	21	25	11.9999
((((	chr19:1415698-1415950(+)$1	1	125	129	11.9999
.)))	chr8:1780034-1780333(+)$1	1	52	56	11.9999
.)))	chr22:50036172-50036399(-)$1	1	222	226	11.9999
.(((	chr20:31172110-31172387(-)$1	1	9	13	11.9999
....	chr11:586307-586628(+)$1	1	203	207	11.9999
(((.	chr9:136135878-136136115(-)$1	1	189	193	11.9999
((((	chr11:65194874-65195094(+)$1	1	47	51	11.9999
.)))	chr19:34874202-34874472(+)$1	1	97	101	11.9999
((((	chr10:43902711-43902979(-)$1	1	59	63	11.9999
))).	chr2:97554243-97554510(-)$1	1	161	165	11.9999
))))	chr22:50049938-50050251(-)$1	1	97	101	11.9999
).))	chr1:109642875-109643082(+)$1	1	153	157	11.9999
.(((	chr5:154135292-154135583(+)$1	1	11	15	11.9999
((((	chr1:32827795-32828062(-)$1	1	0	4	11.9999
((((	chr4:78740041-78740317(-)$1	1	38	42	11.9999
))))	chr19:10407088-10407332(+)$1	1	29	33	11.9999
((((	chr21:44479322-44479562(-)$1	1	9	13	11.9999
))))	chr1:16174697-16174964(+)$1	1	66	70	11.9999
((.(	chr16:85659300-85659564(+)$1	1	34	38	11.9999
.)))	chr3:128214508-128214768(+)$1	1	14	18	11.9999
)).(	chr22:50023541-50023780(-)$1	1	32	36	11.9999
.)))	chr10:72503663-72503918(+)$1	1	75	79	11.9999
).).	chr1:109642841-109643053(+)$1	1	187	191	11.9999
(((.	chr3:186648354-186648607(+)$1	1	67	71	11.9999
(.((	chr1:26799106-26799359(+)$1	1	25	29	11.9999
((((	chr13:92000344-92000614(+)$1	1	62	66	11.9999
).))	chr1:109642836-109643041(+)$1	1	192	196	11.9999
(.((	chr19:1652298-1652554(-)$1	1	18	22	11.9999
((((	chr2:10538775-10539081(+)$1	1	165	169	11.9999
((((	chr11:93454887-93455090(+)$1	1	75	79	11.9999
((((	chr19:827452-827770(+)$1	1	40	44	11.9999
.)))	chr7:5569465-5569798(-)$1	1	14	18	11.9999
((((	chr2:203157675-203157880(+)$1	1	91	95	11.9999
(((.	chr17:80543629-80543895(+)$1	1	31	35	11.9999
((((	chr19:1410903-1411144(+)$1	1	10	14	11.9999
((((	chr19:2425550-2425840(-)$1	1	45	49	11.9999
))).	chr21:47612164-47612445(-)$1	1	98	102	11.9999
..((	chr9:136131998-136132231(-)$1	1	2	6	11.9999
(...	chr19:24187170-24187408(-)$1	1	56	60	11.9999
((.(	chr6:31504067-31504301(-)$1	1	41	45	11.9999
((((	chr19:1408214-1408475(+)$1	1	69	73	11.9999
...)	chr2:97559128-97559380(-)$1	1	107	111	11.9999
))))	chr5:138614374-138614611(+)$1	1	223	227	11.9999
((((	chr21:9826125-9826351(+)$1	1	21	25	11.9999
((((	chr20:35483494-35483746(-)$1	1	26	30	11.9999
))))	chr1:228328116-228328391(+)$1	1	81	85	11.9999
(((.	chr1:109642909-109643123(+)$1	1	119	123	11.9999
(.((	chr22:50039426-50039671(-)$1	1	65	69	11.9999
((((	chr22:49993579-49993824(-)$1	1	25	29	11.9999
((((	chr9:139720745-139720989(+)$1	1	82	86	11.9999
))))	chr19:1410343-1410573(+)$1	1	44	48	11.9999
))))	chr21:38445860-38446107(+)$1	1	229	233	11.9999
((((	chr12:123994399-123994704(-)$1	1	21	25	11.9999
((.(	chr19:2270411-2270656(+)$1	1	49	53	11.9999
.((.	chr22:50024771-50025014(-)$1	1	113	117	11.9999

#PSSM
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	
C : 0.92	c : 0.07	

#score	1115.9999999999998
#seq	93
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_CDS_m3_run1.nuc.txt

#NT
GCCGCCCCUGGCCCGCGCC	chr3:98451554-98451848(+)$1	294	92	111	19.0000
GGGGGCCCCCGGGUGCAGA	chr11:618785-619007(-)$1	222	4	23	15.0000
GCUGGCCCGCGACCGCAGC	chr19:39440666-39440872(-)$1	206	98	117	23.7000
GGAGGCCUCGGCCCGGCGA	chr1:150551691-150551919(-)$1	228	32	51	17.3000
GCGUGCCCCGCGCUGCGGC	chr16:69364264-69364550(-)$1	286	20	39	18.9000
GCAGGGCGGCGGGCGCCGC	chr4:22517153-22517380(-)$1	227	130	149	13.8000
GCCCCCUCCGGGCCGCAGA	chr16:4664460-4664705(-)$1	245	129	148	15.4000
GCUGGCCCGCGACCGCAGC	chr19:39440716-39440974(-)$1	258	200	219	23.7000
ggcggccccggcccgggga	chr22:21212863-21213070(-)$1	207	62	81	20.9000
gcacggccgccgccgcagc	chr7:39990403-39990620(+)$1	217	30	49	17.6000
GAGGGCCUGGACCAGCAGG	chr14:74754793-74755056(-)$1	263	115	134	13.4000
GCGGGCCUAGCCCGGCCUC	chr19:1010196-1010463(-)$1	267	56	75	13.7000
GCUGGCCCGGGCGGGCCGC	chr11:71935947-71936225(+)$1	278	182	201	20.4000
GCUGGCCCGCGACCGCAGC	chr19:39440627-39440835(-)$1	208	61	80	23.7000
GCCGGCACUCACCCGCAGU	chr7:99817617-99817873(-)$1	256	210	229	15.9000
GCGCGUCCUGGGCCGCAGC	chr8:11566104-11566368(+)$1	264	225	244	20.3000
ccggggcccgacccggagc	chr16:475937-476151(+)$1	214	111	130	17.9000
GGAGGCACGGGGCUGCCGC	chr16:31519349-31519644(-)$1	295	6	25	16.9000
GCUGGGCGUGCCCUGCGGC	chr8:145001399-145001674(-)$1	275	125	144	15.8000
GCUGGGCCAGGCGGGCUGC	chr14:24780000-24780247(+)$1	247	133	152	16.3000
GCAGGCCCCGGCCCGCAGC	chr4:22517267-22517496(-)$1	229	70	89	30.3000
GCGGCCUUCGCCCGGCAGC	chr11:64875936-64876205(+)$1	269	18	37	14.6000
GGCGGCCCCGACCCGCAGU	chr16:476002-476226(+)$1	224	139	158	22.0000
GCUGGCCCGGGAGCUGGGC	chr8:145113354-145113607(-)$1	253	43	62	13.7000
GCCCGUCCAGCCCCUCGGC	chr16:89787126-89787369(-)$1	243	52	71	14.0000
GCAGGCCCCGGCCCGCAGC	chr4:22517249-22517467(-)$1	218	41	60	30.3000
GCAGGCCCCGGCCCGCAGC	chr4:22517180-22517449(-)$1	269	23	42	30.3000
ggcggccccggcccgggga	chr22:21212779-21213013(-)$1	234	5	24	20.9000
gggcgccgcggcgggcggc	chr16:2264600-2264868(-)$1	268	29	48	14.1000
CCGGGCUCCCGCCCUCAGC	chr17:46985948-46986222(+)$1	274	113	132	16.0000
GCGCGGGCCGGCCUCCAGC	chr17:27893584-27893866(+)$1	282	106	125	13.5000
GGCGGCCAGCGCCGGCAGC	chr17:48545935-48546191(+)$1	256	173	192	18.2000
GCUGGCCCGCGACCGCAGC	chr19:39440661-39440866(-)$1	205	92	111	23.7000
Acgcgcccccggcggcggc	chr2:220042895-220043178(+)$1	283	111	130	15.3000
gcacggccgccgccgcagc	chr7:39990385-39990603(+)$1	218	48	67	17.6000
GCUGGCCCCUCUCAGCACC	chr20:43019142-43019414(-)$1	272	198	217	14.0000
UCAGGUCCUGGCACGCUGG	chr11:64039015-64039247(+)$1	232	36	55	11.0000
GCCGCCUCUGCCCCGCGGC	chr4:15656785-15657067(-)$1	282	78	97	17.2000
cagggguccggcccgcggc	chr12:58149337-58149582(-)$1	245	34	53	15.6000
GCAGUGCCAGUGCUGCAGC	chr22:42334910-42335164(-)$1	254	233	252	14.0000
GGAGGCCUCGGCCCGGCGA	chr1:150551719-150551941(-)$1	222	54	73	17.3000
GGCGGCCCCGACCCGCAGU	chr16:475972-476183(+)$1	211	169	188	22.0000
CCCGGCCACGCCCAGCGGG	chr14:23770956-23771174(+)$1	218	0	19	13.1000
GGAgcccggggcccggagc	chr22:47133800-47134077(-)$1	277	138	157	16.6000
gcacggccgccgccgcagc	chr7:39990346-39990585(+)$1	239	87	106	17.6000
CCCAAGCCCGGGCCGCAGC	chr19:19774149-19774431(-)$1	282	31	50	14.3000
GGAGGCCUCGGCCCGGCGA	chr1:150551656-150551891(-)$1	235	4	23	17.3000
gcgggccccgggccgagcc	chr16:30913686-30913951(+)$1	265	10	29	19.3000
ggcggccccggcccgggga	chr22:21212813-21213063(-)$1	250	55	74	20.9000

#otherMatches

#Struct PSSM
ddd]==========eeeee	chr16:67997780-67998051(-)$1	271	46	65	13.5000
DDDEEEEEZZZCCCEEEEE	chr3:98451554-98451848(+)$1	294	92	111	19.0000
IIIIII::::ffffffqqq	chr11:618785-619007(-)$1	222	4	23	15.0000
bb[eeeeecccpppppppc	chr19:39440666-39440872(-)$1	206	98	117	23.7000
II{GGGGGGG::::dddd[	chr1:150551691-150551919(-)$1	228	32	51	17.3000
ff[ffffff!!bbmmmmbb	chr16:69364264-69364550(-)$1	286	20	39	18.9000
BB:ccc[ffffff[cccbb	chr4:22517153-22517380(-)$1	227	130	149	13.8000
eeeeeFFFFFFEEEEEYYC	chr16:4664460-4664705(-)$1	245	129	148	15.4000
DDYYCCC}BB}CCCEEEEE	chr19:39440716-39440974(-)$1	258	200	219	23.7000
]eeeeedddddddd[a[ee	chr22:21212863-21213070(-)$1	207	62	81	20.9000
ff[cccddddffffff!!a	chr7:39990403-39990620(+)$1	217	30	49	17.6000
qqqqqccc]a]ccc]dddd	chr14:74754793-74755056(-)$1	263	115	134	13.4000
CJJJJJJJJJJJ:ddddnn	chr19:1010196-1010463(-)$1	267	56	75	13.7000
ccc]ffffff]dddd]ddd	chr11:71935947-71936225(+)$1	278	182	201	20.4000
bb[eeeeecccpppppppc	chr19:39440627-39440835(-)$1	208	61	80	23.7000
J}Abboooooobb:bb[ad	chr7:99817617-99817873(-)$1	256	210	229	15.9000
CC}BB}BB}BB}EEEEE}G	chr8:11566104-11566368(+)$1	264	225	244	20.3000
nnnncccddddeeeee444	chr16:475937-476151(+)$1	214	111	130	17.9000
bb[ccc[cccnnnnnccc]	chr16:31519349-31519644(-)$1	295	6	25	16.9000
a[ccc[cccnnnnnccc]c	chr8:145001399-145001674(-)$1	275	125	144	15.8000
ffffff]dddd]iiiiiii	chr14:24780000-24780247(+)$1	247	133	152	16.3000
g22eeeee]ccc55555cc	chr4:22517267-22517496(-)$1	229	70	89	30.3000
dd]dddd]aJJJJJJJJJJ	chr11:64875936-64876205(+)$1	269	18	37	14.6000
ffffffffff[bb[eeeee	chr16:476002-476226(+)$1	224	139	158	22.0000
bb[ccc####ccc[eeeee	chr8:145113354-145113607(-)$1	253	43	62	13.7000
iiiii22ddddHHHHHHHH	chr16:89787126-89787369(-)$1	243	52	71	14.0000
gccc[cccccc[dddd!!c	chr4:22517249-22517467(-)$1	218	41	60	30.3000
gg[ccc[dddd"""bbqqq	chr4:22517180-22517449(-)$1	269	23	42	30.3000
KKGGGGGGGeeeee[a[ee	chr22:21212779-21213013(-)$1	234	5	24	20.9000
bb[ffffff[bb[a[gggg	chr16:2264600-2264868(-)$1	268	29	48	14.1000
==========eeeee::JJ	chr17:46985948-46986222(+)$1	274	113	132	16.0000
DDDEEEEEBBCCC:dddd[	chr17:27893584-27893866(+)$1	282	106	125	13.5000
cbb]dddd22ccc]eeeee	chr17:48545935-48546191(+)$1	256	173	192	18.2000
bb[eeeeecccpppppppc	chr19:39440661-39440866(-)$1	205	92	111	23.7000
%%%%ggggggg[a[bb[ee	chr2:220042895-220043178(+)$1	283	111	130	15.3000
ff[cccddddffffff!!a	chr7:39990385-39990603(+)$1	218	48	67	17.6000
dddeeeee[bb[ccctttt	chr20:43019142-43019414(-)$1	272	198	217	14.0000
ggggggg::::::DDDD{A	chr11:64039015-64039247(+)$1	232	36	55	11.0000
JJEEEEEFFFFFF{FFFFF	chr4:15656785-15657067(-)$1	282	78	97	17.2000
a[ffffff[dddd[eeeee	chr12:58149337-58149582(-)$1	245	34	53	15.6000
:EEEEE}CCCYYHHHHHHH	chr22:42334910-42335164(-)$1	254	233	252	14.0000
:a[cccmmmmcccadddd[	chr1:150551719-150551941(-)$1	222	54	73	17.3000
ccc]bb]dddd22bb]bbc	chr16:475972-476183(+)$1	211	169	188	22.0000
CCCKKAKKEEEEELLLDDD	chr14:23770956-23771174(+)$1	218	0	19	13.1000
=======eeeeecccmmmm	chr22:47133800-47134077(-)$1	277	138	157	16.6000
ddoooooodddd22fffff	chr7:39990346-39990585(+)$1	239	87	106	17.6000
I::::DDDD{DDDDbb[hh	chr19:19774149-19774431(-)$1	282	31	50	14.3000
BB{DDDDKKCCCBBdddd[	chr1:150551656-150551891(-)$1	235	4	23	17.3000
CCCCCCA{JJJJJJJJJJJ	chr16:30913686-30913951(+)$1	265	10	29	19.3000
]cccEEEEEeeeee[a[ee	chr22:21212813-21213063(-)$1	250	55	74	20.9000

#DB
))).))))))))))(((((	chr16:67997780-67998051(-)$1	1	46	65	13.5000
))))))))...)))(((((	chr3:98451554-98451848(+)$1	1	92	111	19.0000
((((((....((((((...	chr11:618785-619007(-)$1	1	4	23	15.0000
((.((((((((.......)	chr19:39440666-39440872(-)$1	1	98	117	23.7000
((.(((((((....((((.	chr1:150551691-150551919(-)$1	1	32	51	17.3000
((.((((((..((....))	chr16:69364264-69364550(-)$1	1	20	39	18.9000
)).(((.((((((.(((((	chr4:22517153-22517380(-)$1	1	130	149	13.8000
))))))))))))))))..)	chr16:4664460-4664705(-)$1	1	129	148	15.4000
))..))).)).))))))))	chr19:39440716-39440974(-)$1	1	200	219	23.7000
.)))))))))((((.(.((	chr22:21212863-21213070(-)$1	1	62	81	20.9000
((.(((((((((((((..(	chr7:39990403-39990620(+)$1	1	30	49	17.6000
.....))).).))).))))	chr14:74754793-74755056(-)$1	1	115	134	13.4000
((((((((((((.((((..	chr19:1010196-1010463(-)$1	1	56	75	13.7000
))).)))))).)))).)))	chr11:71935947-71936225(+)$1	1	182	201	20.4000
((.((((((((.......)	chr19:39440627-39440835(-)$1	1	61	80	23.7000
).)((......)).((.((	chr7:99817617-99817873(-)$1	1	210	229	15.9000
)).)).)).)).))))).)	chr8:11566104-11566368(+)$1	1	225	244	20.3000
....))))))))))))...	chr16:475937-476151(+)$1	1	111	130	17.9000
((.(((.(((.....))).	chr16:31519349-31519644(-)$1	1	6	25	16.9000
(.(((.(((.....))).)	chr8:145001399-145001674(-)$1	1	125	144	15.8000
)))))).)))).)))))))	chr14:24780000-24780247(+)$1	1	133	152	16.3000
)..))))).))).....))	chr4:22517267-22517496(-)$1	1	70	89	30.3000
)).)))).)((((((((((	chr11:64875936-64876205(+)$1	1	18	37	14.6000
((((((((((.((.(((((	chr16:476002-476226(+)$1	1	139	158	22.0000
((.(((....(((.(((((	chr8:145113354-145113607(-)$1	1	43	62	13.7000
)))))..))))((((((((	chr16:89787126-89787369(-)$1	1	52	71	14.0000
)(((.((((((.((((..(	chr4:22517249-22517467(-)$1	1	41	60	30.3000
((.(((.((((...((...	chr4:22517180-22517449(-)$1	1	23	42	30.3000
..((((((((((((.(.((	chr22:21212779-21213013(-)$1	1	5	24	20.9000
((.((((((.((.(.((((	chr16:2264600-2264868(-)$1	1	29	48	14.1000
)))))))))))))))..))	chr17:46985948-46986222(+)$1	1	113	132	16.0000
(((((((((((((.((((.	chr17:27893584-27893866(+)$1	1	106	125	13.5000
))).))))..))).)))))	chr17:48545935-48546191(+)$1	1	173	192	18.2000
((.((((((((.......)	chr19:39440661-39440866(-)$1	1	92	111	23.7000
....(((((((.(.((.((	chr2:220042895-220043178(+)$1	1	111	130	15.3000
((.(((((((((((((..(	chr7:39990385-39990603(+)$1	1	48	67	17.6000
((((((((.((.(((....	chr20:43019142-43019414(-)$1	1	198	217	14.0000
)))))))......((((.(	chr11:64039015-64039247(+)$1	1	36	55	11.0000
))(((((((((((.(((((	chr4:15656785-15657067(-)$1	1	78	97	17.2000
(.((((((.((((.(((((	chr12:58149337-58149582(-)$1	1	34	53	15.6000
.))))).)))..)))))))	chr22:42334910-42335164(-)$1	1	233	252	14.0000
.(.(((....))))((((.	chr1:150551719-150551941(-)$1	1	54	73	17.3000
))).)).))))..)).)))	chr16:475972-476183(+)$1	1	169	188	22.0000
(((..(..(((((...(((	chr14:23770956-23771174(+)$1	1	0	19	13.1000
)))))))((((((((....	chr22:47133800-47134077(-)$1	1	138	157	16.6000
((......))))..)))))	chr7:39990346-39990585(+)$1	1	87	106	17.6000
(....((((.((((((.((	chr19:19774149-19774431(-)$1	1	31	50	14.3000
((.((((..(((((((((.	chr1:150551656-150551891(-)$1	1	4	23	17.3000
(((((((.(((((((((((	chr16:30913686-30913951(+)$1	1	10	29	19.3000
.)))((((((((((.(.((	chr22:21212813-21213063(-)$1	1	55	74	20.9000

#PSSM
G : 0.70	g : 0.16	C : 0.06	c : 0.04	A : 0.02	U : 0.02	
C : 0.58	G : 0.18	c : 0.12	g : 0.08	A : 0.02	a : 0.02	
A : 0.23	C : 0.19	U : 0.18	G : 0.16	g : 0.10	c : 0.06	a : 0.06	
G : 0.62	g : 0.14	c : 0.10	C : 0.08	U : 0.04	A : 0.02	
G : 0.64	g : 0.21	C : 0.08	U : 0.02	c : 0.02	A : 0.02	
C : 0.58	c : 0.14	G : 0.12	g : 0.10	U : 0.06	
C : 0.62	c : 0.21	U : 0.08	A : 0.04	G : 0.02	u : 0.02	
C : 0.56	c : 0.19	U : 0.12	G : 0.04	g : 0.04	A : 0.04	
C : 0.36	G : 0.19	c : 0.16	U : 0.12	g : 0.08	A : 0.08	
G : 0.56	C : 0.18	g : 0.16	c : 0.08	U : 0.02	
G : 0.50	C : 0.16	g : 0.16	A : 0.08	c : 0.06	a : 0.02	U : 0.02	
C : 0.46	G : 0.18	c : 0.14	A : 0.10	g : 0.10	U : 0.02	
C : 0.64	c : 0.21	G : 0.10	g : 0.02	A : 0.02	
C : 0.46	c : 0.19	U : 0.14	G : 0.10	A : 0.06	g : 0.04	
G : 0.68	g : 0.23	U : 0.06	C : 0.02	
C : 0.68	c : 0.12	g : 0.10	G : 0.08	a : 0.02	
A : 0.42	C : 0.16	G : 0.14	g : 0.14	a : 0.10	U : 0.04	
G : 0.68	g : 0.21	C : 0.06	U : 0.02	c : 0.02	
C : 0.52	c : 0.18	A : 0.10	U : 0.08	a : 0.06	G : 0.06	

#score	897.800000000001
#seq	50
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_transcript_m2_run2.nuc.txt

#NT
AUGGAAUAUCUCUUGGGACAGCAUCUGUGUUUUGUGUGAGCCUGGACCCCAAGACCAAUACCUUGGCAGUGACCGGGGGUGAAGAUGACAAAGCCUUCGUAUGGCGGCUCAGCGAUGGGGAGCUGCUCUUUGAGUGUGCAGGUGAGGGGGCUGGGGUAGAGGCCUGGGAGAGGUCAUAUUCUUUUGGGAGAUCUUAGGAGGCUGACCUGCAGAGGUUGUGcauccaacagccacuuagugacaucucuuuugugccagcucugugcugggccccagggacacggggcgaauaCU	chr2:219132049-219132387(-)$1	338	30	324	382.0000

#otherMatches

#Struct PSSM
eeeee"""ccc[eeeee[a[dddd####ddddeeeee"""cccmmmmccc]eeeee]dddd4444ddddaeeeee]ccc]eeeee:bbdddd[ccc[ffffff####ffffffbb!!eeeee[ccc[cccnnnnnccc333ccc]eeeee]bb]ffffff]ffffffcccdddd]bbffffff"""ggggggglllggggggg22ffffff:dddd[a[ffffffmmmmffffff]adddd::::ccc[ccc"""ddddqqqqqqqqdddd]ccc]ccc:DDDD~~~~IIIIII	chr7:100282571-100282899(-)$1	328	29	323	382.0000
KBB{AMMMMCCCKKDDDDDDDD{CCC{DDDDKKBB{FFFFFFcccrrrrrrrrrccc:::ffffffooooooffffff::::::::::::::cccpppppppcccFFFFFFBBDDDD}CCCDDDD}DDDD}CCCYYA}BBJJJJJJJJJJJ}EEEEE~~~~EEEEEEEEEE{EEEEE:::hhhhhhhhmmmmhhhhhhhhbboooooobb:::ffffffpppppppffffff:::::EEEEE}EEEEE::::::eeeeennnnneeeeeeeeeeqqqqqqqqeeeeeffffffm	chr2:219132049-219132387(-)$1	338	30	324	382.0000

#DB
(((((...(((.(((((.(.((((....(((((((((...(((....))).))))).))))....)))))))))).))).))))).((((((.(((.((((((....((((((((..(((((.(((.(((.....)))...))).))))).)).)))))).))))))))))))).))((((((...(((((((...)))))))..)))))).((((.(.((((((....)))))).)))))....(((.(((...((((........)))).))).))).))))....))))))	chr7:100282571-100282899(-)$1	1	29	323	382.0000
.((.(....(((..((((((((.(((.((((..((.(((((((((.........)))...((((((......))))))..............(((.......))))))))))))))).))))))).)))).)))..).))))))))))))).)))))....)))))(((((.(((((...((((((((....))))))))((......))...((((((.......)))))).....))))).)))))......(((((.....)))))(((((........)))))((((((.	chr2:219132049-219132387(-)$1	1	30	324	382.0000

#PSSM
A : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
G : 0.50	c : 0.50	
G : 0.50	a : 0.50	
A : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	a : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
U : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	c : 0.50	
C : 0.50	u : 0.50	
A : 0.50	u : 0.50	
C : 0.50	a : 0.50	
U : 0.50	g : 0.50	
U : 0.50	u : 0.50	
C : 0.50	g : 0.50	
U : 0.50	a : 0.50	
G : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	u : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
A : 0.50	u : 0.50	
C : 0.50	u : 0.50	
C : 0.50	u : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	u : 0.50	
U : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	c : 0.50	
g : 0.50	a : 0.50	
c : 0.50	g : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
a : 0.50	u : 0.50	
g : 1.00	
c : 0.50	u : 0.50	
c : 0.50	g : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
g : 1.00	
g : 1.00	
c : 0.50	g : 0.50	
c : 1.00	
c : 1.00	
c : 1.00	
a : 0.50	c : 0.50	
g : 0.50	a : 0.50	
c : 0.50	g : 0.50	
u : 0.50	g : 0.50	
c : 0.50	g : 0.50	
a : 1.00	
a : 0.50	c : 0.50	
g : 0.50	a : 0.50	
c : 1.00	
u : 0.50	g : 0.50	
c : 0.50	g : 0.50	
c : 0.50	g : 0.50	
a : 0.50	g : 0.50	
u : 0.50	c : 0.50	
c : 0.50	g : 0.50	
c : 0.50	a : 0.50	
c : 0.50	a : 0.50	
c : 0.50	u : 0.50	
a : 1.00	
u : 0.50	C : 0.50	
c : 0.50	U : 0.50	

#score	764.0
#seq	2
#width	294
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_CDS_m3_run2.nuc.txt

#NT
AGGCGGGCGUCCCGCAGUAgcgggcgggcccggcgggggcgccacgagccggggcuggggggcccggcggagcgcggcgcggggg	chr16:69419499-69419750(-)$1	251	50	135	118.3333
cgccgccgccgccgccgccgccgccgccgccgccgccgUUGCGCAGAUCCGGGCCGCGGCUGUGGGGAGGGCGACGGAGCGGGUG	chr19:1407621-1407886(+)$1	265	2	87	113.3333

#otherMatches

#Struct PSSM
eee[dddd[bb[eeeeebb[ggggggglllgggggggbb>>>>>>>>>>>eeeee]bb]dddd]eeeeeccc[ccc"""bb####	chr1:110527543-110527808(+)$1	265	91	176	109.9999
cc[bb[bb[dddd[a####ccc!!bb[bbccc[a!!dddd[bb[a[cccmmmmccc]abb]dddda]ccc]bb]bb]ccca]ddd	chr16:69419499-69419750(-)$1	251	50	135	118.3333
c[cccdddd!!ccc[dddd!!a[dddd[eeeee[cccwwwwwwwwwwwwwwccc]eeeee]dddd]a22dddd]ccc]dddd999	chr19:1407621-1407886(+)$1	265	2	87	113.3333

#DB
(((.((((.((.(((((((.(((((((...)))))))))...........))))).)).)))).)))))(((.(((...((....	chr1:110527543-110527808(+)$1	1	91	176	109.9999
((.((.((.((((.(....(((..((.(((((.(..((((.((.(.(((....))).))).))))).))).)).)).)))).)))	chr16:69419499-69419750(-)$1	1	50	135	118.3333
(.(((((((..(((.((((..(.((((.(((((.(((..............))).))))).)))).)..)))).))).))))...	chr19:1407621-1407886(+)$1	1	2	87	113.3333

#PSSM
c : 0.66	A : 0.33	
g : 0.66	G : 0.33	
g : 0.33	G : 0.33	c : 0.33	
g : 0.33	C : 0.33	c : 0.33	
g : 0.66	G : 0.33	
g : 0.33	G : 0.33	c : 0.33	
c : 0.66	G : 0.33	
g : 0.66	C : 0.33	
g : 0.33	G : 0.33	c : 0.33	
c : 0.66	U : 0.33	
g : 0.66	C : 0.33	
g : 0.33	C : 0.33	c : 0.33	
g : 0.33	C : 0.33	c : 0.33	
u : 0.33	G : 0.33	g : 0.33	
c : 0.66	C : 0.33	
a : 0.33	A : 0.33	c : 0.33	
g : 0.66	G : 0.33	
c : 0.66	U : 0.33	
c : 0.66	A : 0.33	
g : 1.00	
c : 1.00	
u : 0.33	g : 0.33	c : 0.33	
g : 1.00	
g : 0.66	c : 0.33	
c : 1.00	
g : 0.66	c : 0.33	
g : 0.66	c : 0.33	
g : 0.66	c : 0.33	
g : 0.66	c : 0.33	
c : 1.00	
c : 1.00	
g : 1.00	
g : 0.66	c : 0.33	
c : 1.00	
g : 0.66	c : 0.33	
g : 0.66	c : 0.33	
g : 0.66	c : 0.33	
g : 0.66	G : 0.33	
G : 0.33	g : 0.33	U : 0.33	
A : 0.33	c : 0.33	U : 0.33	
A : 0.33	g : 0.33	G : 0.33	
U : 0.33	c : 0.33	C : 0.33	
G : 0.66	c : 0.33	
U : 0.33	a : 0.33	C : 0.33	
C : 0.33	c : 0.33	A : 0.33	
G : 0.66	g : 0.33	
A : 0.66	a : 0.33	
U : 0.66	g : 0.33	
G : 0.33	c : 0.33	C : 0.33	
C : 0.66	c : 0.33	
C : 0.33	g : 0.33	G : 0.33	
U : 0.33	g : 0.33	G : 0.33	
G : 0.66	g : 0.33	
A : 0.33	g : 0.33	C : 0.33	
C : 0.66	c : 0.33	
G : 0.66	u : 0.33	
C : 0.66	g : 0.33	
G : 0.66	g : 0.33	
A : 0.33	g : 0.33	G : 0.33	
U : 0.33	g : 0.33	C : 0.33	
G : 0.33	g : 0.33	U : 0.33	
C : 0.33	g : 0.33	G : 0.33	
C : 0.33	c : 0.33	U : 0.33	
G : 0.66	c : 0.33	
C : 0.33	c : 0.33	G : 0.33	
U : 0.33	g : 0.33	G : 0.33	
G : 0.66	g : 0.33	
C : 0.33	c : 0.33	A : 0.33	
C : 0.33	g : 0.33	G : 0.33	
C : 0.33	g : 0.33	G : 0.33	
G : 0.66	a : 0.33	
G : 0.33	g : 0.33	C : 0.33	
G : 0.66	c : 0.33	
G : 0.33	g : 0.33	A : 0.33	
U : 0.33	c : 0.33	C : 0.33	
C : 0.33	g : 0.33	G : 0.33	
G : 0.66	g : 0.33	
G : 0.33	c : 0.33	A : 0.33	
G : 0.66	g : 0.33	
G : 0.33	c : 0.33	C : 0.33	
A : 0.33	g : 0.33	G : 0.33	
G : 0.66	g : 0.33	
G : 0.66	g : 0.33	
A : 0.33	g : 0.33	U : 0.33	
G : 0.66	g : 0.33	

#score	341.6666666666663
#seq	3
#width	85
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_CDS_m3_run1.nuc.txt

#NT
GGCCGGG	chr3:52567604-52567906(-)$1	302	9	16	16.4545
ggccagg	chr21:46281491-46281779(-)$1	288	35	42	17.1363
GGCCUGG	chr14:23790595-23790854(+)$1	259	227	234	17.5909
GGCCCGG	chr12:62996807-62997118(+)$1	311	127	134	17.8181
GGCCUgg	chr3:13461595-13461878(-)$1	283	63	70	17.5909
ggccugg	chr19:1585110-1585430(-)$1	320	159	166	17.5909
ggcccgg	chr2:20423850-20424122(-)$1	272	88	95	17.8181
GGCCAGG	chr22:50873291-50873526(+)$1	235	65	72	17.1363
GGCCUGG	chr21:47565643-47565898(-)$1	255	68	75	17.5909
ggcccgg	chr1:234614071-234614338(-)$1	267	254	261	17.8181
GGCCUGG	chr16:2029100-2029389(+)$1	289	111	118	17.5909
GGCCCGG	chr1:27320165-27320415(+)$1	250	139	146	17.8181
ggcccgg	chr16:89788070-89788313(+)$1	243	131	138	17.8181
GGCCAGG	chr3:49755246-49755516(+)$1	270	29	36	17.1363
GGCCAGG	chr7:73021386-73021655(-)$1	269	8	15	17.1363
GGCCUGG	chr17:79860483-79860800(-)$1	317	109	116	17.5909
GGCCAGG	chr11:702875-703118(-)$1	243	25	32	17.1363
GGCCCGG	chr20:32255459-32255706(-)$1	247	9	16	17.8181
GGCCCGG	chr8:145738459-145738728(+)$1	269	189	196	17.8181
GGCCCGG	chr2:232575101-232575353(+)$1	252	130	137	17.8181
GGCCUGG	chr9:140347363-140347614(-)$1	251	53	60	17.5909

#otherMatches

#Struct PSSM
cc333ii	chr17:79973114-79973347(+)$1	233	112	119	16.4545
dddd!!e	chr3:52567604-52567906(-)$1	302	9	16	16.4545
CCCCKKC	chr21:46281491-46281779(-)$1	288	35	42	17.1363
JJJJJJJ	chr14:23790595-23790854(+)$1	259	227	234	17.5909
iii!!dd	chr12:62996807-62997118(+)$1	311	127	134	17.8181
bb22ccc	chr3:13461595-13461878(-)$1	283	63	70	17.5909
eeeee]e	chr19:1585110-1585430(-)$1	320	159	166	17.5909
hhhhhhh	chr2:20423850-20424122(-)$1	272	88	95	17.8181
hhh!!bb	chr22:50873291-50873526(+)$1	235	65	72	17.1363
gggggg]	chr21:47565643-47565898(-)$1	255	68	75	17.5909
fff]ccc	chr1:234614071-234614338(-)$1	267	254	261	17.8181
$$fffff	chr16:2029100-2029389(+)$1	289	111	118	17.5909
iiiiiii	chr1:27320165-27320415(+)$1	250	139	146	17.8181
hhhhh]c	chr16:89788070-89788313(+)$1	243	131	138	17.8181
dd"""dd	chr3:49755246-49755516(+)$1	270	29	36	17.1363
===a[cc	chr7:73021386-73021655(-)$1	269	8	15	17.1363
]dddd]e	chr17:79860483-79860800(-)$1	317	109	116	17.5909
eeee"""	chr11:702875-703118(-)$1	243	25	32	17.1363
JJJJJKK	chr20:32255459-32255706(-)$1	247	9	16	17.8181
YYCCCYY	chr8:145738459-145738728(+)$1	269	189	196	17.8181
fffffff	chr2:232575101-232575353(+)$1	252	130	137	17.8181
ccccca[	chr9:140347363-140347614(-)$1	251	53	60	17.5909

#DB
))...))	chr17:79973114-79973347(+)$1	1	112	119	16.4545
((((..(	chr3:52567604-52567906(-)$1	1	9	16	16.4545
((((..(	chr21:46281491-46281779(-)$1	1	35	42	17.1363
)))))))	chr14:23790595-23790854(+)$1	1	227	234	17.5909
(((..((	chr12:62996807-62997118(+)$1	1	127	134	17.8181
))..)))	chr3:13461595-13461878(-)$1	1	63	70	17.5909
))))).)	chr19:1585110-1585430(-)$1	1	159	166	17.5909
(((((((	chr2:20423850-20424122(-)$1	1	88	95	17.8181
(((..((	chr22:50873291-50873526(+)$1	1	65	72	17.1363
)))))).	chr21:47565643-47565898(-)$1	1	68	75	17.5909
))).)))	chr1:234614071-234614338(-)$1	1	254	261	17.8181
..(((((	chr16:2029100-2029389(+)$1	1	111	118	17.5909
)))))))	chr1:27320165-27320415(+)$1	1	139	146	17.8181
))))).)	chr16:89788070-89788313(+)$1	1	131	138	17.8181
((...((	chr3:49755246-49755516(+)$1	1	29	36	17.1363
((((.((	chr7:73021386-73021655(-)$1	1	8	15	17.1363
.)))).)	chr17:79860483-79860800(-)$1	1	109	116	17.5909
((((...	chr11:702875-703118(-)$1	1	25	32	17.1363
(((((..	chr20:32255459-32255706(-)$1	1	9	16	17.8181
..)))..	chr8:145738459-145738728(+)$1	1	189	196	17.8181
)))))((	chr2:232575101-232575353(+)$1	1	130	137	17.8181
)))))(.	chr9:140347363-140347614(-)$1	1	53	60	17.5909

#PSSM
G : 0.77	g : 0.22	
G : 0.77	g : 0.22	
C : 0.77	c : 0.22	
C : 0.77	c : 0.22	
U : 0.27	C : 0.22	A : 0.18	c : 0.13	G : 0.09	a : 0.04	u : 0.04	
G : 0.72	g : 0.27	
G : 0.72	g : 0.27	

#score	384.27272727272714
#seq	22
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_transcript_m1_run1.nuc.txt

#NT
GGUGGGG	chr11:65194663-65194883(+)$1	220	211	218	21.0000
GGUGGGG	chr2:129041722-129041965(-)$1	243	81	88	21.0000
GGUGGGG	chr21:45374101-45374357(+)$1	256	197	204	21.0000
ggugggg	chr16:50632806-50633073(+)$1	267	25	32	21.0000
GGUGGGG	chr17:70484061-70484328(-)$1	267	0	7	21.0000
GGUGGGG	chr2:235924244-235924505(+)$1	261	106	113	21.0000
GGUGGGG	chr11:70959709-70959950(-)$1	241	92	99	21.0000
GGUGGGG	chr17:63555178-63555487(-)$1	309	93	100	21.0000
GGUGGGG	chr11:65194743-65194953(+)$1	210	131	138	21.0000
GGUGGGG	chr11:65194274-65194489(+)$1	215	3	10	21.0000
GGUGGGG	chr16:73080919-73081187(-)$1	268	65	72	21.0000
GGUGGGG	chr20:60624104-60624352(-)$1	248	80	87	21.0000
GGUGGGG	chr20:17661262-17661526(-)$1	264	103	110	21.0000
GGUGGGG	chr6:64283077-64283350(+)$1	273	41	48	21.0000
GGUGGGG	chr8:142419395-142419657(+)$1	262	86	93	21.0000
GGUGGGG	chr16:81526381-81526637(+)$1	256	94	101	21.0000
GGUGGGG	chr9:137242510-137242762(+)$1	252	79	86	21.0000
GGUGGGG	chr11:65194801-65195051(+)$1	250	73	80	21.0000
GGUGggg	chr7:127671027-127671301(+)$1	274	51	58	21.0000
GGUGGGG	chr19:39140342-39140593(+)$1	251	123	130	21.0000
GGUGGGG	chr11:65194714-65194943(+)$1	229	160	167	21.0000
GGUGGGG	chr1:971701-971952(+)$1	251	38	45	21.0000
GGUGGGG	chr16:75284026-75284272(-)$1	246	15	22	21.0000
GGUGGGG	chr17:7476261-7476549(+)$1	288	32	39	21.0000
GGUGGGG	chr2:240310269-240310534(-)$1	265	171	178	21.0000
ggugggg	chr16:11794667-11794926(-)$1	259	99	106	21.0000
ggugggg	chr17:70554111-70554353(-)$1	242	110	117	21.0000
GGUGGGG	chr8:142425029-142425289(+)$1	260	67	74	21.0000
GGUGGGG	chr7:79081759-79082013(-)$1	254	123	130	21.0000

#otherMatches

#Struct PSSM
nccc22b	chr11:65194683-65194892(+)$1	209	191	198	21.0000
nccc22b	chr11:65194663-65194883(+)$1	220	211	218	21.0000
ooooggg	chr2:129041722-129041965(-)$1	243	81	88	21.0000
IIIII}G	chr21:45374101-45374357(+)$1	256	197	204	21.0000
DD{HHHH	chr16:50632806-50633073(+)$1	267	25	32	21.0000
FFFFFFE	chr17:70484061-70484328(-)$1	267	0	7	21.0000
BB{FFFF	chr2:235924244-235924505(+)$1	261	106	113	21.0000
a]dddd]	chr11:70959709-70959950(-)$1	241	92	99	21.0000
hhh]ccc	chr17:63555178-63555487(-)$1	309	93	100	21.0000
nccc22b	chr11:65194743-65194953(+)$1	210	131	138	21.0000
GGGGGGG	chr11:65194274-65194489(+)$1	215	3	10	21.0000
=======	chr16:73080919-73081187(-)$1	268	65	72	21.0000
ggggggg	chr20:60624104-60624352(-)$1	248	80	87	21.0000
LJJJJJJ	chr20:17661262-17661526(-)$1	264	103	110	21.0000
ooooddd	chr6:64283077-64283350(+)$1	273	41	48	21.0000
ffffff4	chr8:142419395-142419657(+)$1	262	86	93	21.0000
""bb'''	chr16:81526381-81526637(+)$1	256	94	101	21.0000
ff[a[ii	chr9:137242510-137242762(+)$1	252	79	86	21.0000
GGGG{CC	chr11:65194801-65195051(+)$1	250	73	80	21.0000
=======	chr7:127671027-127671301(+)$1	274	51	58	21.0000
ffffff[	chr19:39140342-39140593(+)$1	251	123	130	21.0000
nccc22b	chr11:65194714-65194943(+)$1	229	160	167	21.0000
""eeeee	chr1:971701-971952(+)$1	251	38	45	21.0000
dddmmmm	chr16:75284026-75284272(-)$1	246	15	22	21.0000
ffffff:	chr17:7476261-7476549(+)$1	288	32	39	21.0000
eee22ee	chr2:240310269-240310534(-)$1	265	171	178	21.0000
!!bbccc	chr16:11794667-11794926(-)$1	259	99	106	21.0000
!!dddd$	chr17:70554111-70554353(-)$1	242	110	117	21.0000
HHHHHHH	chr8:142425029-142425289(+)$1	260	67	74	21.0000
fffff::	chr7:79081759-79082013(-)$1	254	123	130	21.0000

#DB
.)))..)	chr11:65194683-65194892(+)$1	1	191	198	21.0000
.)))..)	chr11:65194663-65194883(+)$1	1	211	218	21.0000
....)))	chr2:129041722-129041965(-)$1	1	81	88	21.0000
))))).)	chr21:45374101-45374357(+)$1	1	197	204	21.0000
((.((((	chr16:50632806-50633073(+)$1	1	25	32	21.0000
(((((((	chr17:70484061-70484328(-)$1	1	0	7	21.0000
((.((((	chr2:235924244-235924505(+)$1	1	106	113	21.0000
).)))).	chr11:70959709-70959950(-)$1	1	92	99	21.0000
))).)))	chr17:63555178-63555487(-)$1	1	93	100	21.0000
.)))..)	chr11:65194743-65194953(+)$1	1	131	138	21.0000
(((((((	chr11:65194274-65194489(+)$1	1	3	10	21.0000
(((((((	chr16:73080919-73081187(-)$1	1	65	72	21.0000
)))))))	chr20:60624104-60624352(-)$1	1	80	87	21.0000
.((((((	chr20:17661262-17661526(-)$1	1	103	110	21.0000
....)))	chr6:64283077-64283350(+)$1	1	41	48	21.0000
)))))).	chr8:142419395-142419657(+)$1	1	86	93	21.0000
..((...	chr16:81526381-81526637(+)$1	1	94	101	21.0000
((.(.((	chr9:137242510-137242762(+)$1	1	79	86	21.0000
((((.((	chr11:65194801-65195051(+)$1	1	73	80	21.0000
)))))))	chr7:127671027-127671301(+)$1	1	51	58	21.0000
((((((.	chr19:39140342-39140593(+)$1	1	123	130	21.0000
.)))..)	chr11:65194714-65194943(+)$1	1	160	167	21.0000
..(((((	chr1:971701-971952(+)$1	1	38	45	21.0000
(((....	chr16:75284026-75284272(-)$1	1	15	22	21.0000
)))))).	chr17:7476261-7476549(+)$1	1	32	39	21.0000
)))..))	chr2:240310269-240310534(-)$1	1	171	178	21.0000
..(((((	chr16:11794667-11794926(-)$1	1	99	106	21.0000
..((((.	chr17:70554111-70554353(-)$1	1	110	117	21.0000
)))))))	chr8:142425029-142425289(+)$1	1	67	74	21.0000
)))))..	chr7:79081759-79082013(-)$1	1	123	130	21.0000

#PSSM
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
U : 0.89	u : 0.10	
G : 0.89	g : 0.10	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	

#score	630.0
#seq	30
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_UTR_m2_run2.nuc.txt

#NT
uuuguguguguguguguguguguguguguA	chr7:1888523-1888852(-)$1	329	140	170	65.4310
CGUGGGUGUGUGUGCAUGUGUGUUUGUGUG	chr19:40738503-40738732(-)$1	229	81	111	53.4482
ugugugugugugugcaugugugcgugugug	chr17:72912784-72913099(-)$1	315	102	132	62.7586
ugugugugugugugaguguguguguauaug	chr12:49330652-49330910(-)$1	258	68	98	61.3793
UGUGAGAGAGUGUGUGUUUGUGUGUGUGUU	chr12:58216961-58217254(-)$1	293	96	126	54.1379
Ggugugugugugucuguguguguuugugug	chr17:17942662-17942935(+)$1	273	56	86	62.4999
ugugugagagugugugugugugugugugug	chr21:45323749-45323973(+)$1	224	188	218	67.7586
UGACUUuguguauaugugugugugugugug	chr10:22825734-22825945(-)$1	211	18	48	53.1896
uguaugugugugugcaugcguguguguguU	chr11:790972-791223(-)$1	251	0	30	52.8448
ugugugugugugugugugugugugugugug	chr17:79530956-79531214(-)$1	258	70	100	74.3965
uguguguguguguuugugugugugugugug	chr5:149233777-149234041(+)$1	264	159	189	70.5172
Agugugugugugugugugcgugcgugugug	chr8:12580133-12580408(-)$1	275	97	127	62.1551
ugugugcauguguguguguaugugugugug	chr11:791023-791318(-)$1	295	79	109	62.4999
uguguguguguguguguguguguguguaug	chr3:15483590-15483859(+)$1	269	126	156	69.7413
ugagugagugagugagugUGAGCGUGUGUG	chr13:26828210-26828528(+)$1	318	110	140	51.5517
ugugugugagugcguguguggauaugagug	chr10:104240332-104240617(-)$1	285	85	115	51.6379
ugugugacuguggcuguguaugugugugug	chr19:41195331-41195568(-)$1	237	162	192	55.3448
ugugugugugugugugugugugugugugug	chr8:38827405-38827634(+)$1	229	55	85	74.3965
ucugugugugugcaugugugggugugugug	chr7:99951358-99951627(+)$1	269	88	118	59.2241
ugugugugugcguguguguguguguucgug	chr3:157820555-157820810(-)$1	255	67	97	61.1206
uguguguguguguguguguaugugcgugug	chr3:5025520-5025751(+)$1	231	1	31	66.3793
ugugugcgagugugugugcgugcgugugug	chr15:37391248-37391555(-)$1	307	76	106	60.3448
ugugugugugugugugugugugugugugug	chr2:61764745-61765052(-)$1	307	134	164	74.3965
ugugugugugugugugugugugugugugug	chr12:56991335-56991551(-)$1	216	93	123	74.3965
uaugugugugugggugugugcgccugagug	chr6:43148843-43149102(+)$1	259	211	241	51.2931
ugugugcgugugcgugaguguaugugugug	chr19:10530138-10530446(-)$1	308	81	111	58.7931
uguguguguguguguguguguuugcgugcg	chr19:46970431-46970685(-)$1	254	75	105	61.2931
ugugugugugugugugugugugugugugug	chr12:56991351-56991618(-)$1	267	160	190	74.3965
ugugugugucugugcgugugugcgucugug	chr9:138899132-138899379(-)$1	247	32	62	58.0172
ugugugugugugugugugugugugugugug	chr7:20179336-20179608(-)$1	272	123	153	74.3965
uguguguguguauguguguguguaugugug	chr1:150208205-150208508(-)$1	303	86	116	66.3793
ugugugcgaguggcugugugagugggugug	chr11:47379982-47380228(-)$1	246	149	179	53.7068
uguguguguaucugugugugugugcgcgug	chr2:175937992-175938335(-)$1	343	110	140	57.7586
ugugugugcaugcauguguguguacgugug	chr9:140259762-140260055(-)$1	293	53	83	51.9827
ugcguaugcgugugugugugugugugugug	chr11:71708132-71708405(+)$1	273	108	138	61.8103
ugugugugugugugugugugugugugugug	chr1:156845356-156845619(+)$1	263	137	167	74.3965
uguggguguguuugugugugugugugugug	chr1:21100651-21100914(-)$1	263	47	77	66.1206
ugugugugugugugugugugugugugugug	chr12:56991254-56991488(-)$1	234	30	60	74.3965
uaugugugcgugcgugugugugugugugug	chr3:14526549-14526884(+)$1	335	105	135	63.2758
ugcgugcaugugccuguguguguaugugug	chr16:29679179-29679448(+)$1	269	74	104	51.8965
ugugggugugagugagugugggugugugug	chr19:11664159-11664391(-)$1	232	12	42	58.4482
ugugugugugugugugugugugugugugug	chr11:110101219-110101487(-)$1	268	152	182	74.3965
ugugugugugcgugagugugugugugugua	chr1:40888459-40888735(+)$1	276	95	125	61.8103
uguguguguguguguguauguaugugugug	chr7:133977719-133978005(-)$1	286	89	119	65.2586
ugugugugugugugugugugugugugugug	chr12:56991288-56991535(-)$1	247	77	107	74.3965
Ggugugugugugugugugugugugugugug	chr10:1177524-1177804(+)$1	280	98	128	69.9137
ugugugugugugugugugugugugugugug	chr2:199011800-199012099(+)$1	299	128	158	74.3965
UGUGCGUGGAUUCgugugugugugugugug	chr15:68500174-68500409(-)$1	235	59	89	54.3965
uaugugugugugggugugugcgccugagug	chr6:43148959-43149273(+)$1	314	95	125	51.2931
ugugugugugugugcgugcgugcgugcgug	chr1:44170355-44170625(+)$1	270	87	117	58.7931
ugugugcacgagugugugugugugcgugug	chr9:138902610-138902896(-)$1	286	86	116	55.2586
ugugugugugugucugugugugucugugug	chr7:20180303-20180606(-)$1	303	86	116	67.0689
UGACUUuguguauaugugugugugugugug	chr10:22825745-22825984(-)$1	239	57	87	53.1896
ugugugagagugugagcgagagugugugug	chr7:129472168-129472452(-)$1	284	128	158	51.2068
uguguguguguguguguguacgcgcgugug	chr20:1165039-1165285(-)$1	246	1	31	59.1379
ugugugcgaguggcugugugagugggugug	chr11:47379921-47380139(-)$1	218	60	90	53.7068
uguggguguguuugugugugugugugugug	chr1:21100714-21100983(-)$1	269	116	146	66.1206

#otherMatches

#Struct PSSM
CCCKKBB{A{A{DDDDNNNNNCCC{DDDDW	chr11:47379877-47380121(-)$1	244	42	72	53.7068
ffffff[eeeee[===========mmmm==	chr7:1888523-1888852(-)$1	329	140	170	65.4310
====[aooooooa]===============D	chr19:40738503-40738732(-)$1	229	81	111	53.4482
====[ddddmmmmdddd333==========	chr17:72912784-72913099(-)$1	315	102	132	62.7586
fff>>>>>>>>>>>>>>>>>>>eeeee]ff	chr12:49330652-49330910(-)$1	258	68	98	61.3793
DDDEEEEE:::::::ggggggg[cccnnnn	chr12:58216961-58217254(-)$1	293	96	126	54.1379
ii]ccc]a]bb4444ccc]bb:::::::::	chr17:17942662-17942935(+)$1	273	56	86	62.4999
JJJJZZZJJJJJJJJJJJJ}A:::::::::	chr21:45323749-45323973(+)$1	224	188	218	67.7586
ggggggg==============^^^^^^^^^	chr10:22825734-22825945(-)$1	211	18	48	53.1896
:ffffffooooooffffff:::::::::::	chr11:790972-791223(-)$1	251	0	30	52.8448
nccc]a]ccc:EEEEE{CCC{HHHHHHHH{	chr17:79530956-79531214(-)$1	258	70	100	74.3965
::::::::::::::eeeee[a[a[ffffff	chr5:149233777-149234041(+)$1	264	159	189	70.5172
ggg333cccEEEEE}GGGGGGG}DDDDYYC	chr8:12580133-12580408(-)$1	275	97	127	62.1551
ff]bb================oooooo===	chr11:791023-791318(-)$1	295	79	109	62.4999
gg[eeeee[ccc[eeeee!!cccqqqqqqq	chr3:15483590-15483859(+)$1	269	126	156	69.7413
]ccc]ccc]ccc:::::CCC}BB}CCC}II	chr13:26828210-26828528(+)$1	318	110	140	51.5517
>>>ccc]ddddiiiiiiiii[ddddmmmmd	chr10:104240332-104240617(-)$1	285	85	115	51.6379
FFFbb[cccbb[bb[============qqq	chr19:41195331-41195568(-)$1	237	162	192	55.3448
dddd]ccc::BB{FFFFFF{BBeeeee!!d	chr8:38827405-38827634(+)$1	229	55	85	74.3965
ffff]bb22a]dddd]ffffff22ccc22a	chr7:99951358-99951627(+)$1	269	88	118	59.2241
CCC{BBOOOOOOBB{BB{BB{BB{EEEEEc	chr3:157820555-157820810(-)$1	255	67	97	61.1206
:BBKKHHHHHHHH==========oooooo=	chr3:5025520-5025751(+)$1	231	1	31	66.3793
========oooooo===========fffff	chr15:37391248-37391555(-)$1	307	76	106	60.3448
ee]dddd]a]ccc]bb22bb]a]ccc]a]a	chr2:61764745-61765052(-)$1	307	134	164	74.3965
^^^^^^^^^^^^^^^^^^^dddd333a]a]	chr12:56991335-56991551(-)$1	216	93	123	74.3965
___CCC}CCC}CCC}CCC:ddddbbnnnnn	chr6:43148843-43149102(+)$1	259	211	241	51.2931
qqqggggggg]dddd::ggggggg[a[eee	chr19:10530138-10530446(-)$1	308	81	111	58.7931
]ccc]bb]bb]bb]aiiiiiiiii]bb::G	chr19:46970431-46970685(-)$1	254	75	105	61.2931
^^^^^^^^^^^^^^^^^^^dddd333a]a]	chr12:56991351-56991618(-)$1	267	160	190	74.3965
hhhhqqqqqqqqhhhhhhhh]dddd:hhhh	chr9:138899132-138899379(-)$1	247	32	62	58.0172
fmmmmffffff]ffffff]ffffff:dddd	chr7:20179336-20179608(-)$1	272	123	153	74.3965
IIII:::::================mmmm=	chr1:150208205-150208508(-)$1	303	86	116	66.3793
f]bb]ccca[a[cccnnnnnccc]a]a:::	chr11:47379982-47380228(-)$1	246	149	179	53.7068
$$$$gggggggapppppppa]ggggggg88	chr2:175937992-175938335(-)$1	343	110	140	57.7586
gggg[=============mmmm========	chr9:140259762-140260055(-)$1	293	53	83	51.9827
:bbmmmmbbCCCDDDD}BBA}CCCYYCCCY	chr11:71708132-71708405(+)$1	273	108	138	61.8103
[a[ccc[a[a++++++++++++ccc####a	chr1:156845356-156845619(+)$1	263	137	167	74.3965
F{HHHHHHHHLLLCCC{BBKKDDDD{DDDD	chr1:21100651-21100914(-)$1	263	47	77	66.1206
^^^^^^^^^^^^^^^^^^^dddd333a]a]	chr12:56991254-56991488(-)$1	234	30	60	74.3965
cc]eeeee333bbCCC{CCC{GGGGGGGLL	chr3:14526549-14526884(+)$1	335	105	135	63.2758
==========qqqqqqqq============	chr16:29679179-29679448(+)$1	269	74	104	51.8965
D{A{BB{BB{FFFFFF{BB{CCCddddooo	chr19:11664159-11664391(-)$1	232	12	42	58.4482
nnnnnbb]a]a]a]a:::::::bb!!ffff	chr11:110101219-110101487(-)$1	268	152	182	74.3965
mmmbbgggggggeeeee333eeeeeccc""	chr1:40888459-40888735(+)$1	276	95	125	61.8103
nnnnnbb]a]ccc]dddd]bb::::hhhhh	chr7:133977719-133978005(-)$1	286	89	119	65.2586
^^^^^^^^^^^^^^^^^^^dddd333a]a]	chr12:56991288-56991535(-)$1	247	77	107	74.3965
ddd]a]ccc]dddd:::::ddddooooood	chr10:1177524-1177804(+)$1	280	98	128	69.9137
eCCCZZZDDDD}EEEEEccc[ccc[hhhhh	chr2:199011800-199012099(+)$1	299	128	158	74.3965
4444dddd22dddd]bb]a]bb]bbccc[a	chr15:68500174-68500409(-)$1	235	59	89	54.3965
e333==========]dddd]eeeeeccc[d	chr6:43148959-43149273(+)$1	314	95	125	51.2931
=============mmmm=============	chr1:44170355-44170625(+)$1	270	87	117	58.7931
E:hhhhhhhh!!cccqqqqqqqqccc22hh	chr9:138902610-138902896(-)$1	286	86	116	55.2586
$$$$$bb!!dddd!!dddd"""dddd[a!!	chr7:20180303-20180606(-)$1	303	86	116	67.0689
$$bbnnnnnbb4444ccc]bb22a333===	chr10:22825745-22825984(-)$1	239	57	87	53.1896
{CCC{BBKKEEEEE{CCCdddd[a[bb[a"	chr7:129472168-129472452(-)$1	284	128	158	51.2068
:::ccc[ccc!!a[ccc[gggggggmmmmg	chr20:1165039-1165285(-)$1	246	1	31	59.1379
hhhhhhhh]ccc]bb:::::::::::::::	chr11:47379921-47380139(-)$1	218	60	90	53.7068
IIIII{BB{HHHHHHHH{DDDD::::::::	chr1:21100714-21100983(-)$1	269	116	146	66.1206

#DB
(((..((.(.(.((((.....(((.((((.	chr11:47379877-47380121(-)$1	1	42	72	53.7068
((((((.(((((.(((((((((((....))	chr7:1888523-1888852(-)$1	1	140	170	65.4310
((((.(......).))))))))))))))))	chr19:40738503-40738732(-)$1	1	81	111	53.4482
((((.((((....))))...))))))))))	chr17:72912784-72913099(-)$1	1	102	132	62.7586
)))...................))))).))	chr12:49330652-49330910(-)$1	1	68	98	61.3793
)))(((((.......(((((((.(((....	chr12:58216961-58217254(-)$1	1	96	126	54.1379
)).))).).))....))).)).........	chr17:17942662-17942935(+)$1	1	56	86	62.4999
))))...)))))))))))).).........	chr21:45323749-45323973(+)$1	1	188	218	67.7586
(((((((((((((((((((((.........	chr10:22825734-22825945(-)$1	1	18	48	53.1896
.((((((......))))))...........	chr11:790972-791223(-)$1	1	0	30	52.8448
.))).).))).(((((.(((.((((((((.	chr17:79530956-79531214(-)$1	1	70	100	74.3965
..............(((((.(.(.((((((	chr5:149233777-149234041(+)$1	1	159	189	70.5172
)))...)))))))).))))))).))))..)	chr8:12580133-12580408(-)$1	1	97	127	62.1551
)).))((((((((((((((((......)))	chr11:791023-791318(-)$1	1	79	109	62.4999
((.(((((.(((.(((((..(((.......	chr3:15483590-15483859(+)$1	1	126	156	69.7413
.))).))).))).....))).)).))).))	chr13:26828210-26828528(+)$1	1	110	140	51.5517
...))).))))(((((((((.((((....)	chr10:104240332-104240617(-)$1	1	85	115	51.6379
)))((.(((((.((.((((((((((((...	chr19:41195331-41195568(-)$1	1	162	192	55.3448
)))).)))..((.((((((.(((((((..(	chr8:38827405-38827634(+)$1	1	55	85	74.3965
)))).))..).)))).))))))..)))..)	chr7:99951358-99951627(+)$1	1	88	118	59.2241
(((.((......((.((.((.((.((((((	chr3:157820555-157820810(-)$1	1	67	97	61.1206
.((..((((((((((((((((((......)	chr3:5025520-5025751(+)$1	1	1	31	66.3793
((((((((......)))))))))))(((((	chr15:37391248-37391555(-)$1	1	76	106	60.3448
)).)))).).))).))..)).).))).).)	chr2:61764745-61765052(-)$1	1	134	164	74.3965
...................))))...).).	chr12:56991335-56991551(-)$1	1	93	123	74.3965
...))).))).))).))).((((((.....	chr6:43148843-43149102(+)$1	1	211	241	51.2931
...))))))).))))..(((((((.(.(((	chr19:10530138-10530446(-)$1	1	81	111	58.7931
.))).)).)).)).)))))))))).))..(	chr19:46970431-46970685(-)$1	1	75	105	61.2931
...................))))...).).	chr12:56991351-56991618(-)$1	1	160	190	74.3965
((((........)))))))).)))).((((	chr9:138899132-138899379(-)$1	1	32	62	58.0172
(....)))))).)))))).)))))).((((	chr7:20179336-20179608(-)$1	1	123	153	74.3965
((((.....((((((((((((((((....)	chr1:150208205-150208508(-)$1	1	86	116	66.3793
).)).)))(.(.(((.....))).).)...	chr11:47379982-47380228(-)$1	1	149	179	53.7068
....((((((((.......).)))))))..	chr2:175937992-175938335(-)$1	1	110	140	57.7586
((((.(((((((((((((....))))))))	chr9:140259762-140260055(-)$1	1	53	83	51.9827
.((....))))))))).))).)))..))).	chr11:71708132-71708405(+)$1	1	108	138	61.8103
.(.(((.(.(............(((....(	chr1:156845356-156845619(+)$1	1	137	167	74.3965
(.((((((((...(((.((..((((.((((	chr1:21100651-21100914(-)$1	1	47	77	66.1206
...................))))...).).	chr12:56991254-56991488(-)$1	1	30	60	74.3965
)).)))))...))(((.(((.(((((((..	chr3:14526549-14526884(+)$1	1	105	135	63.2758
((((((((((........))))))))))))	chr16:29679179-29679448(+)$1	1	74	104	51.8965
(.(.((.((.((((((.((.(((((((...	chr19:11664159-11664391(-)$1	1	12	42	58.4482
.....)).).).).).......((..((((	chr11:110101219-110101487(-)$1	1	152	182	74.3965
...))))))))))))))...)))))(((..	chr1:40888459-40888735(+)$1	1	95	125	61.8103
.....)).).))).)))).))....(((((	chr7:133977719-133978005(-)$1	1	89	119	65.2586
...................))))...).).	chr12:56991288-56991535(-)$1	1	77	107	74.3965
))).).))).)))).....((((......)	chr10:1177524-1177804(+)$1	1	98	128	69.9137
))))...)))).)))))(((.(((.(((((	chr2:199011800-199012099(+)$1	1	128	158	74.3965
....))))..)))).)).).)).))(((.(	chr15:68500174-68500409(-)$1	1	59	89	54.3965
)...)))))))))).)))).)))))(((.(	chr6:43148959-43149273(+)$1	1	95	125	51.2931
(((((((((((((....)))))))))))))	chr1:44170355-44170625(+)$1	1	87	117	58.7931
(.((((((((..(((........)))..))	chr9:138902610-138902896(-)$1	1	86	116	55.2586
.....((..((((..((((...((((.(..	chr7:20180303-20180606(-)$1	1	86	116	67.0689
..((.....))....))).))..)...)))	chr10:22825745-22825984(-)$1	1	57	87	53.1896
.(((.((..(((((.(((((((.(.((.(.	chr7:129472168-129472452(-)$1	1	128	158	51.2068
...(((.(((..(.(((.(((((((....)	chr20:1165039-1165285(-)$1	1	1	31	59.1379
)))))))).))).))...............	chr11:47379921-47380139(-)$1	1	60	90	53.7068
(((((.((.((((((((.((((........	chr1:21100714-21100983(-)$1	1	116	146	66.1206

#PSSM
u : 0.86	U : 0.06	G : 0.03	C : 0.01	A : 0.01	
g : 0.82	G : 0.08	a : 0.05	u : 0.01	c : 0.01	
u : 0.86	U : 0.05	A : 0.03	c : 0.03	a : 0.01	
g : 0.89	G : 0.05	C : 0.03	a : 0.01	
u : 0.86	g : 0.05	U : 0.03	G : 0.01	A : 0.01	C : 0.01	
g : 0.89	G : 0.05	U : 0.03	a : 0.01	
u : 0.74	c : 0.13	a : 0.06	U : 0.03	A : 0.01	
g : 0.87	G : 0.05	a : 0.05	c : 0.01	
u : 0.75	a : 0.12	c : 0.06	U : 0.01	A : 0.01	G : 0.01	
g : 0.89	G : 0.03	a : 0.03	c : 0.01	A : 0.01	
u : 0.86	U : 0.05	a : 0.05	c : 0.03	
g : 0.84	a : 0.05	G : 0.03	u : 0.03	c : 0.01	U : 0.01	
u : 0.74	g : 0.10	c : 0.10	U : 0.03	C : 0.01	
g : 0.75	c : 0.12	a : 0.06	G : 0.03	u : 0.01	
u : 0.81	a : 0.08	c : 0.06	C : 0.01	U : 0.01	
g : 0.93	a : 0.03	A : 0.01	G : 0.01	
u : 0.93	U : 0.03	a : 0.01	c : 0.01	
g : 0.94	G : 0.01	U : 0.01	a : 0.01	
u : 0.86	c : 0.06	U : 0.05	a : 0.01	
g : 0.87	a : 0.06	G : 0.05	
u : 0.77	a : 0.06	g : 0.05	c : 0.05	U : 0.03	A : 0.01	
g : 0.87	G : 0.05	a : 0.05	u : 0.01	
u : 0.81	c : 0.13	U : 0.03	C : 0.01	
g : 0.81	a : 0.06	c : 0.05	G : 0.03	U : 0.01	u : 0.01	
u : 0.79	c : 0.10	g : 0.05	U : 0.05	
g : 0.89	G : 0.05	a : 0.01	u : 0.01	c : 0.01	
u : 0.84	U : 0.05	a : 0.05	c : 0.05	
g : 0.91	G : 0.05	a : 0.03	
u : 0.93	U : 0.05	c : 0.01	
g : 0.89	G : 0.03	U : 0.03	A : 0.01	a : 0.01	

#score	3603.965517241381
#seq	58
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_CDS_m2_run2.nuc.txt

#NT
CUUCUC	chrX:140995188-140995450(+)$1	262	118	124	17.9999
CUUCUC	chr3:99569631-99569892(+)$1	261	9	15	17.9999
cuucuc	chr5:112227427-112227712(-)$1	285	0	6	17.9999
CUUCUC	chr16:15696267-15696601(-)$1	334	56	62	17.9999
CUUCUC	chrX:140995271-140995566(+)$1	295	35	41	17.9999
CUUCUC	chr7:128457626-128457998(+)$1	372	211	217	17.9999
CUUCUC	chr7:107564283-107564619(+)$1	336	171	177	17.9999
CUUCUC	chr5:140967703-140967969(-)$1	266	51	57	17.9999
CUUCUC	chr3:99568178-99568418(+)$1	240	186	192	17.9999
CUUCUC	chr14:104151845-104152128(+)$1	283	192	198	17.9999
CUUCUC	chrX:140995011-140995284(+)$1	273	46	52	17.9999
CUUCUC	chr13:39587725-39588008(-)$1	283	121	127	17.9999
CUUCUC	chr12:57114364-57114623(-)$1	259	172	178	17.9999
CUUCUC	chrX:140994804-140995064(+)$1	260	253	259	17.9999
CUUCUC	chr12:57113248-57113498(-)$1	250	87	93	17.9999
CUUCUC	chr3:99568718-99569008(+)$1	290	187	193	17.9999
CUUCUC	chr11:124056516-124056787(+)$1	271	170	176	17.9999
CUUCUC	chrX:140994208-140994432(+)$1	224	16	22	17.9999
CUUCUC	chr20:35090762-35091075(+)$1	313	130	136	17.9999
CUUCUC	chr1:180042785-180043100(+)$1	315	159	165	17.9999
CUUCUC	chrX:140995366-140995620(+)$1	254	36	42	17.9999
CUUCUC	chr3:99568247-99568506(+)$1	259	117	123	17.9999
CUUCUC	chr12:57114258-57114491(-)$1	233	40	46	17.9999
CUUCUC	chr12:57114071-57114378(-)$1	307	116	122	17.9999
cuucuc	chr1:154131419-154131714(-)$1	295	152	158	17.9999

#otherMatches

#Struct PSSM
###ccc	chrX:140994900-140995171(+)$1	271	157	163	17.9999
hhhhhh	chrX:140995188-140995450(+)$1	262	118	124	17.9999
::::BB	chr3:99569631-99569892(+)$1	261	9	15	17.9999
::::::	chr5:112227427-112227712(-)$1	285	0	6	17.9999
::::::	chr16:15696267-15696601(-)$1	334	56	62	17.9999
hhhhhh	chrX:140995271-140995566(+)$1	295	35	41	17.9999
&&bb[b	chr7:128457626-128457998(+)$1	372	211	217	17.9999
mmmmcc	chr7:107564283-107564619(+)$1	336	171	177	17.9999
++++++	chr5:140967703-140967969(-)$1	266	51	57	17.9999
FFFF~~	chr3:99568178-99568418(+)$1	240	186	192	17.9999
^^^^^^	chr14:104151845-104152128(+)$1	283	192	198	17.9999
###ccc	chrX:140995011-140995284(+)$1	273	46	52	17.9999
::::::	chr13:39587725-39588008(-)$1	283	121	127	17.9999
DDNNNN	chr12:57114364-57114623(-)$1	259	172	178	17.9999
::::::	chrX:140994804-140995064(+)$1	260	253	259	17.9999
dddnnn	chr12:57113248-57113498(-)$1	250	87	93	17.9999
::::::	chr3:99568718-99569008(+)$1	290	187	193	17.9999
ffff66	chr11:124056516-124056787(+)$1	271	170	176	17.9999
::::::	chrX:140994208-140994432(+)$1	224	16	22	17.9999
DDDDNN	chr20:35090762-35091075(+)$1	313	130	136	17.9999
:::GGG	chr1:180042785-180043100(+)$1	315	159	165	17.9999
""eeee	chrX:140995366-140995620(+)$1	254	36	42	17.9999
gggggm	chr3:99568247-99568506(+)$1	259	117	123	17.9999
DDNNNN	chr12:57114258-57114491(-)$1	233	40	46	17.9999
""cccl	chr12:57114071-57114378(-)$1	307	116	122	17.9999
::::::	chr1:154131419-154131714(-)$1	295	152	158	17.9999

#DB
...(((	chrX:140994900-140995171(+)$1	1	157	163	17.9999
))))))	chrX:140995188-140995450(+)$1	1	118	124	17.9999
....((	chr3:99569631-99569892(+)$1	1	9	15	17.9999
......	chr5:112227427-112227712(-)$1	1	0	6	17.9999
......	chr16:15696267-15696601(-)$1	1	56	62	17.9999
))))))	chrX:140995271-140995566(+)$1	1	35	41	17.9999
..((.(	chr7:128457626-128457998(+)$1	1	211	217	17.9999
....))	chr7:107564283-107564619(+)$1	1	171	177	17.9999
......	chr5:140967703-140967969(-)$1	1	51	57	17.9999
))))..	chr3:99568178-99568418(+)$1	1	186	192	17.9999
......	chr14:104151845-104152128(+)$1	1	192	198	17.9999
...(((	chrX:140995011-140995284(+)$1	1	46	52	17.9999
......	chr13:39587725-39588008(-)$1	1	121	127	17.9999
((....	chr12:57114364-57114623(-)$1	1	172	178	17.9999
......	chrX:140994804-140995064(+)$1	1	253	259	17.9999
(((...	chr12:57113248-57113498(-)$1	1	87	93	17.9999
......	chr3:99568718-99569008(+)$1	1	187	193	17.9999
))))..	chr11:124056516-124056787(+)$1	1	170	176	17.9999
......	chrX:140994208-140994432(+)$1	1	16	22	17.9999
((((..	chr20:35090762-35091075(+)$1	1	130	136	17.9999
...(((	chr1:180042785-180043100(+)$1	1	159	165	17.9999
..((((	chrX:140995366-140995620(+)$1	1	36	42	17.9999
(((((.	chr3:99568247-99568506(+)$1	1	117	123	17.9999
((....	chr12:57114258-57114491(-)$1	1	40	46	17.9999
..(((.	chr12:57114071-57114378(-)$1	1	116	122	17.9999
......	chr1:154131419-154131714(-)$1	1	152	158	17.9999

#PSSM
C : 0.92	c : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
C : 0.92	c : 0.07	
U : 0.92	u : 0.07	
C : 0.92	c : 0.07	

#score	467.9999999999999
#seq	26
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_CDS_m1_run1.nuc.txt

#NT
GGA	chr12:53689520-53689804(+)$1	284	26	29	9.0000
GGA	chr6:32945166-32945430(+)$1	264	53	56	9.0000
gga	chr14:102549272-102549479(-)$1	207	0	3	9.0000
GGA	chr13:113873157-113873459(+)$1	302	106	109	9.0000
GGA	chr2:61412584-61412830(+)$1	246	31	34	9.0000
GGA	chr14:39748446-39748658(+)$1	212	98	101	9.0000
GGA	chr2:38812733-38813077(-)$1	344	9	12	9.0000
GGA	chr1:245027147-245027404(-)$1	257	5	8	9.0000
GGA	chr6:131225503-131225710(-)$1	207	170	173	9.0000
GGA	chr1:245021400-245021632(-)$1	232	15	18	9.0000
GGA	chr20:62614299-62614515(+)$1	216	36	39	9.0000
GGA	chr17:79967277-79967520(+)$1	243	14	17	9.0000
GGA	chr6:24357686-24357911(-)$1	225	7	10	9.0000
GGA	chr12:103306503-103306765(-)$1	262	21	24	9.0000
GGA	chr5:14290731-14291010(+)$1	279	170	173	9.0000
GGA	chr2:101644431-101644704(-)$1	273	3	6	9.0000
GGA	chr2:85551948-85552217(-)$1	269	113	116	9.0000
GGA	chr12:6879222-6879431(+)$1	209	104	107	9.0000
GGA	chr6:7577911-7578172(+)$1	261	29	32	9.0000
GGA	chr12:69644806-69645098(+)$1	292	101	104	9.0000
GGA	chr19:5707666-5707930(-)$1	264	4	7	9.0000
GGA	chr6:144863832-144864075(+)$1	243	127	130	9.0000
GGA	chr11:129992154-129992376(+)$1	222	5	8	9.0000
GGA	chr2:242195515-242195762(-)$1	247	40	43	9.0000
GGA	chr1:67895778-67896026(-)$1	248	16	19	9.0000
GGA	chr6:79770095-79770384(-)$1	289	19	22	9.0000
GGA	chr12:58112693-58112976(+)$1	283	96	99	9.0000
GGA	chr1:183106759-183107033(+)$1	274	1	4	9.0000
GGA	chr16:15128082-15128337(+)$1	255	65	68	9.0000
GGA	chr5:14291100-14291395(+)$1	295	2	5	9.0000
GGA	chr1:67895870-67896090(-)$1	220	29	32	9.0000
GGA	chr2:65658991-65659271(-)$1	280	62	65	9.0000
GGA	chr19:57325973-57326227(-)$1	254	43	46	9.0000
GGA	chr1:19503864-19504106(-)$1	242	28	31	9.0000
GGA	chr19:10782020-10782297(+)$1	277	13	16	9.0000
GGA	chr2:55808604-55808917(-)$1	313	47	50	9.0000
GGA	chr4:187630145-187630398(-)$1	253	76	79	9.0000
GGA	chr2:166769983-166770241(-)$1	258	3	6	9.0000
GGA	chr20:62373121-62373340(+)$1	219	15	18	9.0000
GGA	chr1:39853738-39854080(+)$1	342	22	25	9.0000
GGA	chr11:129991426-129991684(+)$1	258	5	8	9.0000
GGA	chr14:39646557-39646775(+)$1	218	67	70	9.0000
GGA	chr19:2111605-2111880(-)$1	275	11	14	9.0000
GGA	chr17:8402548-8402823(-)$1	275	64	67	9.0000
GGA	chr17:1585068-1585378(-)$1	310	2	5	9.0000
GGA	chr16:89971295-89971567(+)$1	272	91	94	9.0000
GGA	chr14:24035483-24035728(-)$1	245	6	9	9.0000
GGA	chr11:2980970-2981230(-)$1	260	219	222	9.0000
GGA	chr2:62934229-62934472(+)$1	243	28	31	9.0000
GGA	chr6:144761464-144761702(+)$1	238	162	165	9.0000
GGA	chr20:34312859-34313066(-)$1	207	16	19	9.0000
GGA	chr18:697138-697412(-)$1	274	100	103	9.0000
GGA	chr3:48457420-48457663(-)$1	243	86	89	9.0000
GGA	chr11:66391653-66391996(+)$1	343	50	53	9.0000
GGA	chr2:54858512-54858730(+)$1	218	16	19	9.0000
GGA	chr6:33372587-33372880(+)$1	293	42	45	9.0000
GGA	chr2:232321681-232321917(-)$1	236	3	6	9.0000
GGA	chr2:61411748-61411991(+)$1	243	54	57	9.0000
gga	chr17:45735774-45736047(+)$1	273	40	43	9.0000
GGA	chr12:432665-432978(-)$1	313	309	312	9.0000
GGA	chr3:184042709-184042989(+)$1	280	0	3	9.0000
GGA	chr6:31503042-31503284(-)$1	242	32	35	9.0000
GGA	chr2:242593884-242594149(+)$1	265	79	82	9.0000
GGA	chr12:6692356-6692593(-)$1	237	48	51	9.0000
GGA	chr12:69651411-69651679(+)$1	268	88	91	9.0000
GGA	chr2:198288549-198288797(-)$1	248	48	51	9.0000
GGA	chr2:242440811-242441078(-)$1	267	20	23	9.0000
GGA	chr9:131347927-131348198(+)$1	271	115	118	9.0000
GGA	chr1:39759078-39759390(+)$1	312	50	53	9.0000
GGA	chr17:45755597-45755868(+)$1	271	4	7	9.0000
GGA	chr20:39792667-39792917(+)$1	250	1	4	9.0000
GGA	chr10:120809258-120809489(-)$1	231	32	35	9.0000
GGA	chr13:107211708-107211943(-)$1	235	16	19	9.0000
GGA	chr6:4052163-4052425(+)$1	262	230	233	9.0000
gga	chr9:100777552-100777774(+)$1	222	94	97	9.0000
GGA	chr20:57288919-57289240(+)$1	321	66	69	9.0000
GGA	chr1:35652738-35652953(-)$1	215	83	86	9.0000
GGA	chr20:8351927-8352158(+)$1	231	53	56	9.0000
GGA	chr6:144809724-144809993(+)$1	269	107	110	9.0000
GGA	chr4:184129035-184129315(+)$1	280	21	24	9.0000
GGA	chr17:36865681-36865925(+)$1	244	80	83	9.0000
GGA	chr9:139701959-139702202(+)$1	243	86	89	9.0000
GGA	chr19:57325174-57325401(-)$1	227	20	23	9.0000
GGA	chr20:34067429-34067667(+)$1	238	50	53	9.0000
GGA	chr6:31378920-31379234(+)$1	314	13	16	9.0000
GGA	chr12:76448698-76448935(-)$1	237	64	67	9.0000
GGA	chr2:102314834-102315045(+)$1	211	99	102	9.0000
GGA	chr16:89858235-89858501(-)$1	266	3	6	9.0000
GGA	chr1:109773452-109773742(+)$1	290	46	49	9.0000
GGA	chr2:153572408-153572683(-)$1	275	76	79	9.0000
GGA	chr19:10792558-10792810(+)$1	252	40	43	9.0000
GGA	chr9:139733645-139733987(+)$1	342	54	57	9.0000
GGA	chr1:19430532-19430780(-)$1	248	54	57	9.0000
GGA	chr1:245025820-245026081(-)$1	261	50	53	9.0000
GGA	chr3:48454153-48454381(-)$1	228	92	95	9.0000
GGA	chr11:93469197-93469566(-)$1	369	98	101	9.0000
GGA	chr7:73010594-73010829(-)$1	235	42	45	9.0000
GGA	chr6:56373330-56373646(-)$1	316	1	4	9.0000
GGA	chr19:57325472-57325693(-)$1	221	40	43	9.0000

#otherMatches

#Struct PSSM
"""	chr9:128000340-128000569(-)$1	229	35	38	9.0000
ccc	chr12:53689520-53689804(+)$1	284	26	29	9.0000
f22	chr6:32945166-32945430(+)$1	264	53	56	9.0000
:::	chr14:102549272-102549479(-)$1	207	0	3	9.0000
cc$	chr13:113873157-113873459(+)$1	302	106	109	9.0000
fff	chr2:61412584-61412830(+)$1	246	31	34	9.0000
:GG	chr14:39748446-39748658(+)$1	212	98	101	9.0000
BBN	chr2:38812733-38813077(-)$1	344	9	12	9.0000
{AM	chr1:245027147-245027404(-)$1	257	5	8	9.0000
FFF	chr6:131225503-131225710(-)$1	207	170	173	9.0000
$$$	chr1:245021400-245021632(-)$1	232	15	18	9.0000
fff	chr20:62614299-62614515(+)$1	216	36	39	9.0000
ddd	chr17:79967277-79967520(+)$1	243	14	17	9.0000
ddd	chr6:24357686-24357911(-)$1	225	7	10	9.0000
JJJ	chr12:103306503-103306765(-)$1	262	21	24	9.0000
cc:	chr5:14290731-14291010(+)$1	279	170	173	9.0000
DBB	chr2:101644431-101644704(-)$1	273	3	6	9.0000
===	chr2:85551948-85552217(-)$1	269	113	116	9.0000
dd]	chr12:6879222-6879431(+)$1	209	104	107	9.0000
c!!	chr6:7577911-7578172(+)$1	261	29	32	9.0000
BBL	chr12:69644806-69645098(+)$1	292	101	104	9.0000
ggg	chr19:5707666-5707930(-)$1	264	4	7	9.0000
bb:	chr6:144863832-144864075(+)$1	243	127	130	9.0000
BB{	chr11:129992154-129992376(+)$1	222	5	8	9.0000
ccc	chr2:242195515-242195762(-)$1	247	40	43	9.0000
FFF	chr1:67895778-67896026(-)$1	248	16	19	9.0000
EGG	chr6:79770095-79770384(-)$1	289	19	22	9.0000
3bb	chr12:58112693-58112976(+)$1	283	96	99	9.0000
CCC	chr1:183106759-183107033(+)$1	274	1	4	9.0000
gss	chr16:15128082-15128337(+)$1	255	65	68	9.0000
c!!	chr5:14291100-14291395(+)$1	295	2	5	9.0000
CCf	chr1:67895870-67896090(-)$1	220	29	32	9.0000
b22	chr2:65658991-65659271(-)$1	280	62	65	9.0000
nnn	chr19:57325973-57326227(-)$1	254	43	46	9.0000
BB:	chr1:19503864-19504106(-)$1	242	28	31	9.0000
cc]	chr19:10782020-10782297(+)$1	277	13	16	9.0000
===	chr2:55808604-55808917(-)$1	313	47	50	9.0000
bbm	chr4:187630145-187630398(-)$1	253	76	79	9.0000
ddd	chr2:166769983-166770241(-)$1	258	3	6	9.0000
ddd	chr20:62373121-62373340(+)$1	219	15	18	9.0000
mmm	chr1:39853738-39854080(+)$1	342	22	25	9.0000
fff	chr11:129991426-129991684(+)$1	258	5	8	9.0000
ooo	chr14:39646557-39646775(+)$1	218	67	70	9.0000
HHH	chr19:2111605-2111880(-)$1	275	11	14	9.0000
fff	chr17:8402548-8402823(-)$1	275	64	67	9.0000
:ff	chr17:1585068-1585378(-)$1	310	2	5	9.0000
a]c	chr16:89971295-89971567(+)$1	272	91	94	9.0000
HHH	chr14:24035483-24035728(-)$1	245	6	9	9.0000
ddd	chr11:2980970-2981230(-)$1	260	219	222	9.0000
ccc	chr2:62934229-62934472(+)$1	243	28	31	9.0000
dd4	chr6:144761464-144761702(+)$1	238	162	165	9.0000
G::	chr20:34312859-34313066(-)$1	207	16	19	9.0000
EEE	chr18:697138-697412(-)$1	274	100	103	9.0000
ee:	chr3:48457420-48457663(-)$1	243	86	89	9.0000
qqq	chr11:66391653-66391996(+)$1	343	50	53	9.0000
BBW	chr2:54858512-54858730(+)$1	218	16	19	9.0000
!hh	chr6:33372587-33372880(+)$1	293	42	45	9.0000
:::	chr2:232321681-232321917(-)$1	236	3	6	9.0000
fff	chr2:61411748-61411991(+)$1	243	54	57	9.0000
fff	chr17:45735774-45736047(+)$1	273	40	43	9.0000
ccc	chr12:432665-432978(-)$1	313	309	312	9.0000
:::	chr3:184042709-184042989(+)$1	280	0	3	9.0000
DDK	chr6:31503042-31503284(-)$1	242	32	35	9.0000
BKK	chr2:242593884-242594149(+)$1	265	79	82	9.0000
nnn	chr12:6692356-6692593(-)$1	237	48	51	9.0000
hhh	chr12:69651411-69651679(+)$1	268	88	91	9.0000
===	chr2:198288549-198288797(-)$1	248	48	51	9.0000
fbb	chr2:242440811-242441078(-)$1	267	20	23	9.0000
###	chr9:131347927-131348198(+)$1	271	115	118	9.0000
ddd	chr1:39759078-39759390(+)$1	312	50	53	9.0000
:CC	chr17:45755597-45755868(+)$1	271	4	7	9.0000
ccc	chr20:39792667-39792917(+)$1	250	1	4	9.0000
"bb	chr10:120809258-120809489(-)$1	231	32	35	9.0000
EEE	chr13:107211708-107211943(-)$1	235	16	19	9.0000
nnn	chr6:4052163-4052425(+)$1	262	230	233	9.0000
gg2	chr9:100777552-100777774(+)$1	222	94	97	9.0000
ggg	chr20:57288919-57289240(+)$1	321	66	69	9.0000
:::	chr1:35652738-35652953(-)$1	215	83	86	9.0000
a55	chr20:8351927-8352158(+)$1	231	53	56	9.0000
fff	chr6:144809724-144809993(+)$1	269	107	110	9.0000
DD:	chr4:184129035-184129315(+)$1	280	21	24	9.0000
b]c	chr17:36865681-36865925(+)$1	244	80	83	9.0000
ddd	chr9:139701959-139702202(+)$1	243	86	89	9.0000
boo	chr19:57325174-57325401(-)$1	227	20	23	9.0000
d[b	chr20:34067429-34067667(+)$1	238	50	53	9.0000
HHH	chr6:31378920-31379234(+)$1	314	13	16	9.0000
hhh	chr12:76448698-76448935(-)$1	237	64	67	9.0000
hhh	chr2:102314834-102315045(+)$1	211	99	102	9.0000
:::	chr16:89858235-89858501(-)$1	266	3	6	9.0000
rrr	chr1:109773452-109773742(+)$1	290	46	49	9.0000
cco	chr2:153572408-153572683(-)$1	275	76	79	9.0000
g[b	chr19:10792558-10792810(+)$1	252	40	43	9.0000
eee	chr9:139733645-139733987(+)$1	342	54	57	9.0000
ccc	chr1:19430532-19430780(-)$1	248	54	57	9.0000
ppp	chr1:245025820-245026081(-)$1	261	50	53	9.0000
cc[	chr3:48454153-48454381(-)$1	228	92	95	9.0000
ii$	chr11:93469197-93469566(-)$1	369	98	101	9.0000
DDD	chr7:73010594-73010829(-)$1	235	42	45	9.0000
cc[	chr6:56373330-56373646(-)$1	316	1	4	9.0000
mmm	chr19:57325472-57325693(-)$1	221	40	43	9.0000

#DB
...	chr9:128000340-128000569(-)$1	1	35	38	9.0000
)))	chr12:53689520-53689804(+)$1	1	26	29	9.0000
)..	chr6:32945166-32945430(+)$1	1	53	56	9.0000
...	chr14:102549272-102549479(-)$1	1	0	3	9.0000
((.	chr13:113873157-113873459(+)$1	1	106	109	9.0000
(((	chr2:61412584-61412830(+)$1	1	31	34	9.0000
.((	chr14:39748446-39748658(+)$1	1	98	101	9.0000
((.	chr2:38812733-38813077(-)$1	1	9	12	9.0000
.(.	chr1:245027147-245027404(-)$1	1	5	8	9.0000
)))	chr6:131225503-131225710(-)$1	1	170	173	9.0000
...	chr1:245021400-245021632(-)$1	1	15	18	9.0000
(((	chr20:62614299-62614515(+)$1	1	36	39	9.0000
(((	chr17:79967277-79967520(+)$1	1	14	17	9.0000
(((	chr6:24357686-24357911(-)$1	1	7	10	9.0000
(((	chr12:103306503-103306765(-)$1	1	21	24	9.0000
)).	chr5:14290731-14291010(+)$1	1	170	173	9.0000
(((	chr2:101644431-101644704(-)$1	1	3	6	9.0000
)))	chr2:85551948-85552217(-)$1	1	113	116	9.0000
)).	chr12:6879222-6879431(+)$1	1	104	107	9.0000
(..	chr6:7577911-7578172(+)$1	1	29	32	9.0000
((.	chr12:69644806-69645098(+)$1	1	101	104	9.0000
(((	chr19:5707666-5707930(-)$1	1	4	7	9.0000
)).	chr6:144863832-144864075(+)$1	1	127	130	9.0000
((.	chr11:129992154-129992376(+)$1	1	5	8	9.0000
(((	chr2:242195515-242195762(-)$1	1	40	43	9.0000
(((	chr1:67895778-67896026(-)$1	1	16	19	9.0000
(((	chr6:79770095-79770384(-)$1	1	19	22	9.0000
.))	chr12:58112693-58112976(+)$1	1	96	99	9.0000
(((	chr1:183106759-183107033(+)$1	1	1	4	9.0000
(..	chr16:15128082-15128337(+)$1	1	65	68	9.0000
(..	chr5:14291100-14291395(+)$1	1	2	5	9.0000
(((	chr1:67895870-67896090(-)$1	1	29	32	9.0000
)..	chr2:65658991-65659271(-)$1	1	62	65	9.0000
...	chr19:57325973-57326227(-)$1	1	43	46	9.0000
((.	chr1:19503864-19504106(-)$1	1	28	31	9.0000
)).	chr19:10782020-10782297(+)$1	1	13	16	9.0000
)))	chr2:55808604-55808917(-)$1	1	47	50	9.0000
((.	chr4:187630145-187630398(-)$1	1	76	79	9.0000
(((	chr2:166769983-166770241(-)$1	1	3	6	9.0000
)))	chr20:62373121-62373340(+)$1	1	15	18	9.0000
...	chr1:39853738-39854080(+)$1	1	22	25	9.0000
(((	chr11:129991426-129991684(+)$1	1	5	8	9.0000
...	chr14:39646557-39646775(+)$1	1	67	70	9.0000
(((	chr19:2111605-2111880(-)$1	1	11	14	9.0000
)))	chr17:8402548-8402823(-)$1	1	64	67	9.0000
.((	chr17:1585068-1585378(-)$1	1	2	5	9.0000
).)	chr16:89971295-89971567(+)$1	1	91	94	9.0000
(((	chr14:24035483-24035728(-)$1	1	6	9	9.0000
)))	chr11:2980970-2981230(-)$1	1	219	222	9.0000
)))	chr2:62934229-62934472(+)$1	1	28	31	9.0000
)).	chr6:144761464-144761702(+)$1	1	162	165	9.0000
(..	chr20:34312859-34313066(-)$1	1	16	19	9.0000
(((	chr18:697138-697412(-)$1	1	100	103	9.0000
)).	chr3:48457420-48457663(-)$1	1	86	89	9.0000
...	chr11:66391653-66391996(+)$1	1	50	53	9.0000
((.	chr2:54858512-54858730(+)$1	1	16	19	9.0000
.((	chr6:33372587-33372880(+)$1	1	42	45	9.0000
...	chr2:232321681-232321917(-)$1	1	3	6	9.0000
)))	chr2:61411748-61411991(+)$1	1	54	57	9.0000
)))	chr17:45735774-45736047(+)$1	1	40	43	9.0000
)))	chr12:432665-432978(-)$1	1	309	312	9.0000
...	chr3:184042709-184042989(+)$1	1	0	3	9.0000
((.	chr6:31503042-31503284(-)$1	1	32	35	9.0000
(..	chr2:242593884-242594149(+)$1	1	79	82	9.0000
...	chr12:6692356-6692593(-)$1	1	48	51	9.0000
)((	chr12:69651411-69651679(+)$1	1	88	91	9.0000
(((	chr2:198288549-198288797(-)$1	1	48	51	9.0000
(((	chr2:242440811-242441078(-)$1	1	20	23	9.0000
...	chr9:131347927-131348198(+)$1	1	115	118	9.0000
(((	chr1:39759078-39759390(+)$1	1	50	53	9.0000
.((	chr17:45755597-45755868(+)$1	1	4	7	9.0000
(((	chr20:39792667-39792917(+)$1	1	1	4	9.0000
.((	chr10:120809258-120809489(-)$1	1	32	35	9.0000
(((	chr13:107211708-107211943(-)$1	1	16	19	9.0000
...	chr6:4052163-4052425(+)$1	1	230	233	9.0000
)).	chr9:100777552-100777774(+)$1	1	94	97	9.0000
)))	chr20:57288919-57289240(+)$1	1	66	69	9.0000
...	chr1:35652738-35652953(-)$1	1	83	86	9.0000
)..	chr20:8351927-8352158(+)$1	1	53	56	9.0000
(((	chr6:144809724-144809993(+)$1	1	107	110	9.0000
((.	chr4:184129035-184129315(+)$1	1	21	24	9.0000
).)	chr17:36865681-36865925(+)$1	1	80	83	9.0000
)))	chr9:139701959-139702202(+)$1	1	86	89	9.0000
(..	chr19:57325174-57325401(-)$1	1	20	23	9.0000
(.(	chr20:34067429-34067667(+)$1	1	50	53	9.0000
(((	chr6:31378920-31379234(+)$1	1	13	16	9.0000
)))	chr12:76448698-76448935(-)$1	1	64	67	9.0000
(((	chr2:102314834-102315045(+)$1	1	99	102	9.0000
...	chr16:89858235-89858501(-)$1	1	3	6	9.0000
...	chr1:109773452-109773742(+)$1	1	46	49	9.0000
((.	chr2:153572408-153572683(-)$1	1	76	79	9.0000
(.(	chr19:10792558-10792810(+)$1	1	40	43	9.0000
)))	chr9:139733645-139733987(+)$1	1	54	57	9.0000
)))	chr1:19430532-19430780(-)$1	1	54	57	9.0000
...	chr1:245025820-245026081(-)$1	1	50	53	9.0000
((.	chr3:48454153-48454381(-)$1	1	92	95	9.0000
((.	chr11:93469197-93469566(-)$1	1	98	101	9.0000
(((	chr7:73010594-73010829(-)$1	1	42	45	9.0000
((.	chr6:56373330-56373646(-)$1	1	1	4	9.0000
...	chr19:57325472-57325693(-)$1	1	40	43	9.0000

#PSSM
G : 0.97	g : 0.03	
G : 0.97	g : 0.03	
A : 0.97	a : 0.03	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_CDS_m1_run1.nuc.txt

#NT
AGUGGGGUUAGCGAUGGAGGUAGGAUUGGU	chrM:14203-14413(-)$1	210	17	47	89.9999
AGUGGGGUUAGCGAUGGAGGUAGGAUUGGU	chrM:14270-14498(-)$1	228	102	132	89.9999
AGUGGGGUUAGCGAUGGAGGUAGGAUUGGU	chrM:14232-14441(-)$1	209	45	75	89.9999
AGUGGGGUUAGCGAUGGAGGUAGGAUUGGU	chrM:14222-14432(-)$1	210	36	66	89.9999
AGUGGGGUUAGCGAUGGAGGUAGGAUUGGU	chrM:14213-14418(-)$1	205	22	52	89.9999
AGUGGGGUUAGCGAUGGAGGUAGGAUUGGU	chrM:14266-14469(-)$1	203	73	103	89.9999
AGUGGGGUUAGCGAUGGAGGUAGGAUUGGU	chrM:14218-14422(-)$1	204	26	56	89.9999
AGUGGGGUUAGCGAUGGAGGUAGGAUUGGU	chrM:14366-14601(-)$1	235	205	235	89.9999
AGUGGGGUUAGCGAUGGAGGUAGGAUUGGU	chrM:14241-14447(-)$1	206	51	81	89.9999

#otherMatches

#Struct PSSM
fff####a!!bb####eeeeea[eeeee[d	chrM:14249-14466(-)$1	217	70	100	89.9999
fff####a!!bb####eeeeea[eeeee[d	chrM:14203-14413(-)$1	210	17	47	89.9999
fff####a!!bb####eeeeea[eeeee[d	chrM:14270-14498(-)$1	228	102	132	89.9999
fff####a!!bb####eeeeea[eeeee[d	chrM:14232-14441(-)$1	209	45	75	89.9999
fff####a!!bb####eeeeea[eeeee[d	chrM:14222-14432(-)$1	210	36	66	89.9999
fff####a!!bb####eeeeea[eeeee[d	chrM:14213-14418(-)$1	205	22	52	89.9999
ii333a]bb22dddd:::::::::::a[ee	chrM:14266-14469(-)$1	203	73	103	89.9999
fff####a!!bb####eeeeea[eeeee[d	chrM:14218-14422(-)$1	204	26	56	89.9999
:::::::ccc[aooooooa]ccc:::::::	chrM:14366-14601(-)$1	235	205	235	89.9999
fff####a!!bb####eeeeea[eeeee[d	chrM:14241-14447(-)$1	206	51	81	89.9999

#DB
(((....(..((....((((((.(((((.(	chrM:14249-14466(-)$1	1	70	100	89.9999
(((....(..((....((((((.(((((.(	chrM:14203-14413(-)$1	1	17	47	89.9999
(((....(..((....((((((.(((((.(	chrM:14270-14498(-)$1	1	102	132	89.9999
(((....(..((....((((((.(((((.(	chrM:14232-14441(-)$1	1	45	75	89.9999
(((....(..((....((((((.(((((.(	chrM:14222-14432(-)$1	1	36	66	89.9999
(((....(..((....((((((.(((((.(	chrM:14213-14418(-)$1	1	22	52	89.9999
))...).))..))))...........(.((	chrM:14266-14469(-)$1	1	73	103	89.9999
(((....(..((....((((((.(((((.(	chrM:14218-14422(-)$1	1	26	56	89.9999
.......(((.(......).))).......	chrM:14366-14601(-)$1	1	205	235	89.9999
(((....(..((....((((((.(((((.(	chrM:14241-14447(-)$1	1	51	81	89.9999

#PSSM
A : 0.99	
G : 0.99	
U : 0.99	
G : 0.99	
G : 0.99	
G : 0.99	
G : 0.99	
U : 0.99	
U : 0.99	
A : 0.99	
G : 0.99	
C : 0.99	
G : 0.99	
A : 0.99	
U : 0.99	
G : 0.99	
G : 0.99	
A : 0.99	
G : 0.99	
G : 0.99	
U : 0.99	
A : 0.99	
G : 0.99	
G : 0.99	
A : 0.99	
U : 0.99	
U : 0.99	
G : 0.99	
G : 0.99	
U : 0.99	

#score	899.9999999999999
#seq	10
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_CDS_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
ee[cccpppppppccc]eeeee:DDDDKKEEEEE{EEEEEKKDDDDKKDDDD:iiiiiiiiieeeee[bb[dddd"""cccmmmmccc7777777dddd]bb]eeeee333iiiiiiiiiHHHHHHHH::::::::::::::ggggggg[bbnnnnnbb]gggggggbbmmmmbbeeeeemmmmeeeee:ccclllccc:::HHHHHHHHDDDD}DDDDYYEEEEE}EEEEEZZZD	chr5:179043852-179044097(-)$1	245	6	242	708.0000

#DB
((.(((.......))).))))).((((..(((((.(((((..((((..((((.((((((((((((((.((.((((...(((....))).......)))).)).)))))...)))))))))((((((((..............(((((((.((.....)).)))))))((....))(((((....))))).(((...)))...)))))))))))).))))..))))).)))))...)	chr5:179043852-179044097(-)$1	1	6	242	708.0000

#PSSM
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	

#score	708.0
#seq	1
#width	236
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF854NXI_HNRNPU_transcript_m3_run1.nuc.txt

#NT
AGGAA	chr2:65635003-65635261(-)$1	258	98	103	15.0000
AGGAA	chr15:67466195-67466484(+)$1	289	66	71	15.0000
aggaa	chr3:126166697-126166981(-)$1	284	105	110	15.0000
AGGAA	chr8:121771249-121771516(-)$1	267	19	24	15.0000
aggaa	chr8:128843752-128844056(+)$1	304	185	190	15.0000
AGGAA	chr16:50647834-50648124(+)$1	290	167	172	15.0000
aggaa	chrX:132925478-132925736(-)$1	258	41	46	15.0000
aggaa	chrX:133055407-133055651(-)$1	244	48	53	15.0000
aggaa	chr11:2689017-2689314(-)$1	297	102	107	15.0000
AGGAA	chr17:7309501-7309762(+)$1	261	241	246	15.0000
aggaa	chr2:120193345-120193591(+)$1	246	45	50	15.0000
AGGAA	chr1:23750527-23750761(-)$1	234	0	5	15.0000
aggaa	chr20:36134559-36134813(-)$1	254	90	95	15.0000
aggaa	chr20:47548982-47549255(+)$1	273	202	207	15.0000
AGGAA	chr20:36142586-36142822(-)$1	236	23	28	15.0000
AGGAA	chr6:2217245-2217584(-)$1	339	103	108	15.0000
AGGAA	chr17:70524232-70524535(-)$1	303	166	171	15.0000
AGGAA	chr2:236500702-236500983(+)$1	281	86	91	15.0000
aggaa	chr18:55715681-55715934(+)$1	253	7	12	15.0000
AGGAA	chr11:2702906-2703166(-)$1	260	221	226	15.0000
AGGAA	chr2:153255445-153255686(+)$1	241	24	29	15.0000
AGGAA	chrX:133075329-133075586(-)$1	257	182	187	15.0000
AGGAA	chr12:125269217-125269495(-)$1	278	177	182	15.0000
AGGAA	chr17:4915893-4916201(+)$1	308	44	49	15.0000
aggaa	chr20:47903832-47904102(+)$1	270	73	78	15.0000
AGGAA	chr11:2695422-2695659(-)$1	237	56	61	15.0000
AGGAA	chr8:121687836-121688112(-)$1	276	57	62	15.0000
AGGAA	chr7:29319184-29319490(+)$1	306	92	97	15.0000
aggaa	chr16:66765216-66765489(-)$1	273	37	42	15.0000
AGGAA	chr2:153300704-153300967(+)$1	263	45	50	15.0000
aggaa	chr6:16419083-16419330(-)$1	247	42	47	15.0000
aggaa	chr6:142725381-142725628(+)$1	247	20	25	15.0000
aggaa	chr11:2713291-2713589(-)$1	298	141	146	15.0000
AGGAA	chr6:47273430-47273681(-)$1	251	12	17	15.0000
AGGAA	chr19:41771167-41771419(+)$1	252	23	28	15.0000
AGGAA	chr17:56456728-56456993(-)$1	265	117	122	15.0000
aggaa	chr14:55099792-55100122(+)$1	330	310	315	15.0000
AGGAA	chr6:2123508-2123782(-)$1	274	8	13	15.0000
aggaa	chr11:2716326-2716553(-)$1	227	83	88	15.0000
aggaa	chr2:73187586-73187894(-)$1	308	253	258	15.0000
aggaa	chr2:191074272-191074586(-)$1	314	84	89	15.0000
AGGAA	chr16:50589010-50589251(+)$1	241	32	37	15.0000
AGGAA	chr3:61564245-61564520(+)$1	275	174	179	15.0000
aggaa	chrX:133044364-133044620(-)$1	256	43	48	15.0000
AGGAA	chr16:89555653-89555911(-)$1	258	46	51	15.0000
AGGAA	chr1:154976551-154976815(+)$1	264	61	66	15.0000
AGGAA	chr6:41546852-41547128(+)$1	276	179	184	15.0000
AGGAA	chr17:70570641-70570888(-)$1	247	173	178	15.0000
AGGAA	chrX:132910520-132910777(-)$1	257	77	82	15.0000
AGGAA	chr3:171891576-171891834(+)$1	258	75	80	15.0000
aggaa	chr6:52414808-52415193(-)$1	385	38	43	15.0000
AGGAA	chrX:133025888-133026123(-)$1	235	6	11	15.0000
AGGAA	chrX:133056085-133056340(-)$1	255	108	113	15.0000
AGGAA	chr11:2713596-2713892(-)$1	296	54	59	15.0000
AGGAA	chr11:120083644-120083917(+)$1	273	51	56	15.0000
AGGAA	chr2:153255744-153256008(+)$1	264	234	239	15.0000
AGGAA	chr5:95295903-95296167(-)$1	264	254	259	15.0000

#otherMatches

#Struct PSSM
DDD::	chr9:116945878-116946152(+)$1	274	103	108	15.0000
HHHHH	chr2:65635003-65635261(-)$1	258	98	103	15.0000
:::::	chr15:67466195-67466484(+)$1	289	66	71	15.0000
b]bb:	chr3:126166697-126166981(-)$1	284	105	110	15.0000
:::::	chr8:121771249-121771516(-)$1	267	19	24	15.0000
gggmm	chr8:128843752-128844056(+)$1	304	185	190	15.0000
:::::	chr16:50647834-50648124(+)$1	290	167	172	15.0000
ccnnn	chrX:132925478-132925736(-)$1	258	41	46	15.0000
oobb]	chrX:133055407-133055651(-)$1	244	48	53	15.0000
===="	chr11:2689017-2689314(-)$1	297	102	107	15.0000
eeeeq	chr17:7309501-7309762(+)$1	261	241	246	15.0000
:::::	chr2:120193345-120193591(+)$1	246	45	50	15.0000
:::::	chr1:23750527-23750761(-)$1	234	0	5	15.0000
c]ddd	chr20:36134559-36134813(-)$1	254	90	95	15.0000
ccc::	chr20:47548982-47549255(+)$1	273	202	207	15.0000
hhhhh	chr20:36142586-36142822(-)$1	236	23	28	15.0000
ddd[e	chr6:2217245-2217584(-)$1	339	103	108	15.0000
ddddp	chr17:70524232-70524535(-)$1	303	166	171	15.0000
iii[b	chr2:236500702-236500983(+)$1	281	86	91	15.0000
EEEEN	chr18:55715681-55715934(+)$1	253	7	12	15.0000
EEEE}	chr11:2702906-2703166(-)$1	260	221	226	15.0000
:::::	chr2:153255445-153255686(+)$1	241	24	29	15.0000
ddd!!	chrX:133075329-133075586(-)$1	257	182	187	15.0000
:::::	chr12:125269217-125269495(-)$1	278	177	182	15.0000
ccmmm	chr17:4915893-4916201(+)$1	308	44	49	15.0000
:::::	chr20:47903832-47904102(+)$1	270	73	78	15.0000
eemmm	chr11:2695422-2695659(-)$1	237	56	61	15.0000
cccdd	chr8:121687836-121688112(-)$1	276	57	62	15.0000
ffqqq	chr7:29319184-29319490(+)$1	306	92	97	15.0000
PPPPP	chr16:66765216-66765489(-)$1	273	37	42	15.0000
ttccc	chr2:153300704-153300967(+)$1	263	45	50	15.0000
ssccc	chr6:16419083-16419330(-)$1	247	42	47	15.0000
EEEE:	chr6:142725381-142725628(+)$1	247	20	25	15.0000
""bb[	chr11:2713291-2713589(-)$1	298	141	146	15.0000
:EEEE	chr6:47273430-47273681(-)$1	251	12	17	15.0000
ee!!a	chr19:41771167-41771419(+)$1	252	23	28	15.0000
!ccc[	chr17:56456728-56456993(-)$1	265	117	122	15.0000
GGZZZ	chr14:55099792-55100122(+)$1	330	310	315	15.0000
bbooo	chr6:2123508-2123782(-)$1	274	8	13	15.0000
$$$$$	chr11:2716326-2716553(-)$1	227	83	88	15.0000
:FFFF	chr2:73187586-73187894(-)$1	308	253	258	15.0000
fff::	chr2:191074272-191074586(-)$1	314	84	89	15.0000
KKAKK	chr16:50589010-50589251(+)$1	241	32	37	15.0000
ooooo	chr3:61564245-61564520(+)$1	275	174	179	15.0000
hdddd	chrX:133044364-133044620(-)$1	256	43	48	15.0000
DDQQQ	chr16:89555653-89555911(-)$1	258	46	51	15.0000
cc333	chr1:154976551-154976815(+)$1	264	61	66	15.0000
GGG::	chr6:41546852-41547128(+)$1	276	179	184	15.0000
eee!!	chr17:70570641-70570888(-)$1	247	173	178	15.0000
bb22e	chrX:132910520-132910777(-)$1	257	77	82	15.0000
g::::	chr3:171891576-171891834(+)$1	258	75	80	15.0000
KDDDD	chr6:52414808-52415193(-)$1	385	38	43	15.0000
!!eee	chrX:133025888-133026123(-)$1	235	6	11	15.0000
hhhhh	chrX:133056085-133056340(-)$1	255	108	113	15.0000
eee!!	chr11:2713596-2713892(-)$1	296	54	59	15.0000
hhhhh	chr11:120083644-120083917(+)$1	273	51	56	15.0000
iiiii	chr2:153255744-153256008(+)$1	264	234	239	15.0000
:::::	chr5:95295903-95296167(-)$1	264	254	259	15.0000

#DB
)))..	chr9:116945878-116946152(+)$1	1	103	108	15.0000
(((((	chr2:65635003-65635261(-)$1	1	98	103	15.0000
.....	chr15:67466195-67466484(+)$1	1	66	71	15.0000
).)).	chr3:126166697-126166981(-)$1	1	105	110	15.0000
.....	chr8:121771249-121771516(-)$1	1	19	24	15.0000
(((..	chr8:128843752-128844056(+)$1	1	185	190	15.0000
.....	chr16:50647834-50648124(+)$1	1	167	172	15.0000
((...	chrX:132925478-132925736(-)$1	1	41	46	15.0000
..)).	chrX:133055407-133055651(-)$1	1	48	53	15.0000
((((.	chr11:2689017-2689314(-)$1	1	102	107	15.0000
((((.	chr17:7309501-7309762(+)$1	1	241	246	15.0000
.....	chr2:120193345-120193591(+)$1	1	45	50	15.0000
.....	chr1:23750527-23750761(-)$1	1	0	5	15.0000
).)))	chr20:36134559-36134813(-)$1	1	90	95	15.0000
)))..	chr20:47548982-47549255(+)$1	1	202	207	15.0000
)))))	chr20:36142586-36142822(-)$1	1	23	28	15.0000
(((.(	chr6:2217245-2217584(-)$1	1	103	108	15.0000
((((.	chr17:70524232-70524535(-)$1	1	166	171	15.0000
(((.(	chr2:236500702-236500983(+)$1	1	86	91	15.0000
((((.	chr18:55715681-55715934(+)$1	1	7	12	15.0000
)))).	chr11:2702906-2703166(-)$1	1	221	226	15.0000
.....	chr2:153255445-153255686(+)$1	1	24	29	15.0000
(((..	chrX:133075329-133075586(-)$1	1	182	187	15.0000
.....	chr12:125269217-125269495(-)$1	1	177	182	15.0000
((...	chr17:4915893-4916201(+)$1	1	44	49	15.0000
.....	chr20:47903832-47904102(+)$1	1	73	78	15.0000
((...	chr11:2695422-2695659(-)$1	1	56	61	15.0000
(((((	chr8:121687836-121688112(-)$1	1	57	62	15.0000
((...	chr7:29319184-29319490(+)$1	1	92	97	15.0000
.....	chr16:66765216-66765489(-)$1	1	37	42	15.0000
..)))	chr2:153300704-153300967(+)$1	1	45	50	15.0000
..)))	chr6:16419083-16419330(-)$1	1	42	47	15.0000
((((.	chr6:142725381-142725628(+)$1	1	20	25	15.0000
..((.	chr11:2713291-2713589(-)$1	1	141	146	15.0000
.((((	chr6:47273430-47273681(-)$1	1	12	17	15.0000
((..(	chr19:41771167-41771419(+)$1	1	23	28	15.0000
.(((.	chr17:56456728-56456993(-)$1	1	117	122	15.0000
))...	chr14:55099792-55100122(+)$1	1	310	315	15.0000
((...	chr6:2123508-2123782(-)$1	1	8	13	15.0000
.....	chr11:2716326-2716553(-)$1	1	83	88	15.0000
.))))	chr2:73187586-73187894(-)$1	1	253	258	15.0000
)))..	chr2:191074272-191074586(-)$1	1	84	89	15.0000
..(..	chr16:50589010-50589251(+)$1	1	32	37	15.0000
.....	chr3:61564245-61564520(+)$1	1	174	179	15.0000
(((((	chrX:133044364-133044620(-)$1	1	43	48	15.0000
((...	chr16:89555653-89555911(-)$1	1	46	51	15.0000
))...	chr1:154976551-154976815(+)$1	1	61	66	15.0000
(((..	chr6:41546852-41547128(+)$1	1	179	184	15.0000
(((..	chr17:70570641-70570888(-)$1	1	173	178	15.0000
))..)	chrX:132910520-132910777(-)$1	1	77	82	15.0000
)....	chr3:171891576-171891834(+)$1	1	75	80	15.0000
.((((	chr6:52414808-52415193(-)$1	1	38	43	15.0000
..(((	chrX:133025888-133026123(-)$1	1	6	11	15.0000
(((((	chrX:133056085-133056340(-)$1	1	108	113	15.0000
(((..	chr11:2713596-2713892(-)$1	1	54	59	15.0000
)))))	chr11:120083644-120083917(+)$1	1	51	56	15.0000
)))))	chr2:153255744-153256008(+)$1	1	234	239	15.0000
.....	chr5:95295903-95296167(-)$1	1	254	259	15.0000

#PSSM
A : 0.65	a : 0.34	
G : 0.65	g : 0.34	
G : 0.65	g : 0.34	
A : 0.65	a : 0.34	
A : 0.65	a : 0.34	

#score	870.0
#seq	58
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_UTR_m2_run1.nuc.txt

#NT
UGGGGG	chr1:153940829-153941122(+)$1	293	56	62	16.1818
UGGGGG	chr12:56119299-56119549(-)$1	250	232	238	16.1818
UGGGGG	chr22:42913894-42914111(-)$1	217	143	149	16.1818
UGGGGG	chr1:22161889-22162133(-)$1	244	61	67	16.1818
UGGUGG	chr19:10429747-10430037(-)$1	290	18	24	14.5909
UGGGGG	chr6:34214788-34215048(-)$1	260	81	87	16.1818
UGGGGG	chr1:46826394-46826660(+)$1	266	159	165	16.1818
uggagg	chr14:23791033-23791295(+)$1	262	47	53	13.2272
UGGGGG	chr8:146015725-146015957(-)$1	232	50	56	16.1818
UGGUGG	chr1:46072156-46072459(+)$1	303	166	172	14.5909
UGGGGG	chr3:183962402-183962638(-)$1	236	52	58	16.1818
UGGGGG	chr17:4903161-4903412(+)$1	251	109	115	16.1818
UGGGGG	chr8:141561256-141561502(-)$1	246	131	137	16.1818
UGGUGG	chr9:138774545-138774763(-)$1	218	207	213	14.5909
UGGGGG	chr1:22176869-22177082(-)$1	213	6	12	16.1818
UGGUGG	chr5:95067733-95067977(+)$1	244	29	35	14.5909
uggugg	chr6:131996228-131996473(+)$1	245	169	175	14.5909
UGGGGG	chr3:47040282-47040594(+)$1	312	129	135	16.1818
uggugg	chr16:58657194-58657433(-)$1	239	22	28	14.5909
UGGUGG	chr11:118959316-118959564(+)$1	248	53	59	14.5909
UGGGGG	chr1:249149990-249150271(-)$1	281	11	17	16.1818
UGGAGG	chr3:9876496-9876727(+)$1	231	152	158	13.2272
UGGUGG	chr1:206592650-206592898(+)$1	248	143	149	14.5909
UGGUGG	chr6:30709871-30710086(-)$1	215	151	157	14.5909
UGGGGG	chr12:54582466-54582746(-)$1	280	45	51	16.1818
UGGUGG	chr11:93469168-93469403(-)$1	235	164	170	14.5909
UGGGGG	chr17:17163467-17163715(-)$1	248	142	148	16.1818
UGGUGG	chr17:80402215-80402423(-)$1	208	31	37	14.5909
UGGGGG	chr11:62377019-62377297(-)$1	278	132	138	16.1818
UGGUGG	chr11:93469115-93469364(-)$1	249	125	131	14.5909
UGGGGG	chr15:89448865-89449088(-)$1	223	109	115	16.1818
UGGGGG	chr19:18682639-18682901(+)$1	262	104	110	16.1818
UGGGGG	chr19:47287697-47287910(-)$1	213	165	171	16.1818
UGGGGG	chr7:2269654-2269906(-)$1	252	148	154	16.1818
UGGGGG	chr3:38388315-38388569(+)$1	254	149	155	16.1818
UGGGGG	chr8:145650882-145651142(-)$1	260	113	119	16.1818
UGGGGG	chr15:64428497-64428757(+)$1	260	248	254	16.1818
uggggg	chr7:102306495-102306797(-)$1	302	63	69	16.1818
UGGGGG	chr3:47460671-47460918(-)$1	247	9	15	16.1818
UGGGGG	chr16:89799864-89800106(+)$1	242	151	157	16.1818
UGGGGG	chr14:35099063-35099340(-)$1	277	62	68	16.1818
UGGUGG	chr1:224492591-224492841(-)$1	250	124	130	14.5909
UGGGGG	chr12:131357000-131357255(+)$1	255	54	60	16.1818

#otherMatches

#Struct PSSM
iii]dd	chr12:48184935-48185142(-)$1	207	88	94	14.5909
CCKKII	chr1:153940829-153941122(+)$1	293	56	62	16.1818
:GGGGG	chr12:56119299-56119549(-)$1	250	232	238	16.1818
DD====	chr22:42913894-42914111(-)$1	217	143	149	16.1818
GGGccc	chr1:22161889-22162133(-)$1	244	61	67	16.1818
iiiiii	chr19:10429747-10430037(-)$1	290	18	24	14.5909
!hhhhh	chr6:34214788-34215048(-)$1	260	81	87	16.1818
dddd!!	chr1:46826394-46826660(+)$1	266	159	165	16.1818
dddmmm	chr14:23791033-23791295(+)$1	262	47	53	13.2272
c[cccm	chr8:146015725-146015957(-)$1	232	50	56	16.1818
:fffff	chr1:46072156-46072459(+)$1	303	166	172	14.5909
c[dddd	chr3:183962402-183962638(-)$1	236	52	58	16.1818
eeee[a	chr17:4903161-4903412(+)$1	251	109	115	16.1818
eedddd	chr8:141561256-141561502(-)$1	246	131	137	16.1818
E}ADDD	chr9:138774545-138774763(-)$1	218	207	213	14.5909
Geeeee	chr1:22176869-22177082(-)$1	213	6	12	16.1818
cccmmm	chr5:95067733-95067977(+)$1	244	29	35	14.5909
eeeegg	chr6:131996228-131996473(+)$1	245	169	175	14.5909
fffff!	chr3:47040282-47040594(+)$1	312	129	135	16.1818
BB{III	chr16:58657194-58657433(-)$1	239	22	28	14.5909
cca[cc	chr11:118959316-118959564(+)$1	248	53	59	14.5909
{HHHHH	chr1:249149990-249150271(-)$1	281	11	17	16.1818
eFFFFF	chr3:9876496-9876727(+)$1	231	152	158	13.2272
YCCCee	chr1:206592650-206592898(+)$1	248	143	149	14.5909
fbb[dd	chr6:30709871-30710086(-)$1	215	151	157	14.5909
gggggg	chr12:54582466-54582746(-)$1	280	45	51	16.1818
c[bb[f	chr11:93469168-93469403(-)$1	235	164	170	14.5909
ee"""c	chr17:17163467-17163715(-)$1	248	142	148	16.1818
KCCC{B	chr17:80402215-80402423(-)$1	208	31	37	14.5909
[eeeee	chr11:62377019-62377297(-)$1	278	132	138	16.1818
c[bb[f	chr11:93469115-93469364(-)$1	249	125	131	14.5909
22====	chr15:89448865-89449088(-)$1	223	109	115	16.1818
d[hhhh	chr19:18682639-18682901(+)$1	262	104	110	16.1818
DDDDCC	chr19:47287697-47287910(-)$1	213	165	171	16.1818
mmmmbb	chr7:2269654-2269906(-)$1	252	148	154	16.1818
gggggg	chr3:38388315-38388569(+)$1	254	149	155	16.1818
dd[eee	chr8:145650882-145651142(-)$1	260	113	119	16.1818
:HHHHH	chr15:64428497-64428757(+)$1	260	248	254	16.1818
#eeeee	chr7:102306495-102306797(-)$1	302	63	69	16.1818
FF{FFF	chr3:47460671-47460918(-)$1	247	9	15	16.1818
eeee!!	chr16:89799864-89800106(+)$1	242	151	157	16.1818
FFFFF{	chr14:35099063-35099340(-)$1	277	62	68	16.1818
hheeee	chr1:224492591-224492841(-)$1	250	124	130	14.5909
C{BBee	chr12:131357000-131357255(+)$1	255	54	60	16.1818

#DB
))).))	chr12:48184935-48185142(-)$1	1	88	94	14.5909
((..((	chr1:153940829-153941122(+)$1	1	56	62	16.1818
.)))))	chr12:56119299-56119549(-)$1	1	232	238	16.1818
))((((	chr22:42913894-42914111(-)$1	1	143	149	16.1818
((((((	chr1:22161889-22162133(-)$1	1	61	67	16.1818
((((((	chr19:10429747-10430037(-)$1	1	18	24	14.5909
.(((((	chr6:34214788-34215048(-)$1	1	81	87	16.1818
((((..	chr1:46826394-46826660(+)$1	1	159	165	16.1818
(((...	chr14:23791033-23791295(+)$1	1	47	53	13.2272
(.(((.	chr8:146015725-146015957(-)$1	1	50	56	16.1818
.(((((	chr1:46072156-46072459(+)$1	1	166	172	14.5909
(.((((	chr3:183962402-183962638(-)$1	1	52	58	16.1818
((((.(	chr17:4903161-4903412(+)$1	1	109	115	16.1818
))))))	chr8:141561256-141561502(-)$1	1	131	137	16.1818
).))))	chr9:138774545-138774763(-)$1	1	207	213	14.5909
((((((	chr1:22176869-22177082(-)$1	1	6	12	16.1818
(((...	chr5:95067733-95067977(+)$1	1	29	35	14.5909
((((((	chr6:131996228-131996473(+)$1	1	169	175	14.5909
(((((.	chr3:47040282-47040594(+)$1	1	129	135	16.1818
((.(((	chr16:58657194-58657433(-)$1	1	22	28	14.5909
(((.((	chr11:118959316-118959564(+)$1	1	53	59	14.5909
.(((((	chr1:249149990-249150271(-)$1	1	11	17	16.1818
))))))	chr3:9876496-9876727(+)$1	1	152	158	13.2272
.)))((	chr1:206592650-206592898(+)$1	1	143	149	14.5909
)((.((	chr6:30709871-30710086(-)$1	1	151	157	14.5909
((((((	chr12:54582466-54582746(-)$1	1	45	51	16.1818
(.((.(	chr11:93469168-93469403(-)$1	1	164	170	14.5909
((...(	chr17:17163467-17163715(-)$1	1	142	148	16.1818
.(((.(	chr17:80402215-80402423(-)$1	1	31	37	14.5909
.(((((	chr11:62377019-62377297(-)$1	1	132	138	16.1818
(.((.(	chr11:93469115-93469364(-)$1	1	125	131	14.5909
..))))	chr15:89448865-89449088(-)$1	1	109	115	16.1818
(.((((	chr19:18682639-18682901(+)$1	1	104	110	16.1818
))))))	chr19:47287697-47287910(-)$1	1	165	171	16.1818
....))	chr7:2269654-2269906(-)$1	1	148	154	16.1818
))))))	chr3:38388315-38388569(+)$1	1	149	155	16.1818
((.(((	chr8:145650882-145651142(-)$1	1	113	119	16.1818
.)))))	chr15:64428497-64428757(+)$1	1	248	254	16.1818
.(((((	chr7:102306495-102306797(-)$1	1	63	69	16.1818
((.(((	chr3:47460671-47460918(-)$1	1	9	15	16.1818
((((..	chr16:89799864-89800106(+)$1	1	151	157	16.1818
(((((.	chr14:35099063-35099340(-)$1	1	62	68	16.1818
((((((	chr1:224492591-224492841(-)$1	1	124	130	14.5909
(.((((	chr12:131357000-131357255(+)$1	1	54	60	16.1818

#PSSM
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	
G : 0.61	U : 0.27	u : 0.04	a : 0.02	A : 0.02	g : 0.02	
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	

#score	683.8181818181812
#seq	44
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_transcript_m2_run1.nuc.txt

#NT
CUGU	chr3:48481604-48481822(+)$1	218	30	34	12.0000
CUGU	chr6:33246921-33247231(-)$1	310	46	50	12.0000
CUGU	chr19:1853018-1853291(-)$1	273	170	174	12.0000
CUGU	chr16:315386-315618(+)$1	232	74	78	12.0000
CUGU	chr16:2820926-2821145(+)$1	219	105	109	12.0000
CUGU	chr2:27249705-27249965(+)$1	260	76	80	12.0000
CUGU	chr7:100888142-100888444(-)$1	302	113	117	12.0000
CUGU	chr2:27249612-27249855(+)$1	243	169	173	12.0000
CUGU	chr16:89663353-89663615(+)$1	262	85	89	12.0000
CUGU	chr17:3827296-3827549(-)$1	253	165	169	12.0000
CUGU	chr17:48462523-48462753(-)$1	230	20	24	12.0000
CUGU	chr9:131770813-131771099(-)$1	286	36	40	12.0000
CUGU	chr19:42736109-42736402(-)$1	293	60	64	12.0000
CUGU	chr5:177577303-177577556(+)$1	253	49	53	12.0000
CUGU	chr9:139566683-139566953(+)$1	270	249	253	12.0000
CUGU	chr17:61822878-61823151(-)$1	273	146	150	12.0000
CUGU	chr16:450306-450647(+)$1	341	121	125	12.0000
CUGU	chr16:767122-767406(+)$1	284	8	12	12.0000
CUGU	chr16:88876451-88876656(-)$1	205	40	44	12.0000
CUGU	chr8:144662587-144662844(-)$1	257	31	35	12.0000
CUGU	chr1:150594825-150595102(-)$1	277	211	215	12.0000
CUGU	chr19:35770258-35770532(+)$1	274	53	57	12.0000
CUGU	chr15:74701883-74702160(-)$1	277	245	249	12.0000
CUGU	chr10:70744587-70744850(+)$1	263	3	7	12.0000
cugu	chr11:70281333-70281576(+)$1	243	23	27	12.0000
CUGU	chr17:79991718-79992015(+)$1	297	42	46	12.0000
CUGU	chr1:220321093-220321383(+)$1	290	45	49	12.0000
CUGU	chr22:50942695-50943007(-)$1	312	94	98	12.0000
CUGU	chr19:39405991-39406249(-)$1	258	75	79	12.0000
CUGU	chr22:19754360-19754617(+)$1	257	38	42	12.0000
CUGU	chr16:30007476-30007749(+)$1	273	257	261	12.0000
CUGU	chr9:139734799-139735040(+)$1	241	215	219	12.0000
CUGU	chr11:63990837-63991122(+)$1	285	43	47	12.0000
CUGU	chr8:21939708-21939997(+)$1	289	261	265	12.0000
CUGU	chr15:49170829-49171090(+)$1	261	80	84	12.0000
CUGU	chr9:131770613-131770927(-)$1	314	83	87	12.0000
CUGU	chr19:17342822-17343124(-)$1	302	96	100	12.0000
CUGU	chr19:15491039-15491308(-)$1	269	5	9	12.0000
CUGU	chr11:57509563-57509819(+)$1	256	117	121	12.0000
CUGU	chr19:2755421-2755678(-)$1	257	148	152	12.0000
CUGU	chr7:1607011-1607305(-)$1	294	148	152	12.0000
CUGU	chr19:50063807-50064049(-)$1	242	46	50	12.0000
cugu	chr7:99750922-99751241(+)$1	319	30	34	12.0000
CUGU	chr11:252588-252845(+)$1	257	124	128	12.0000
CUGU	chr9:130647586-130647912(-)$1	326	29	33	12.0000
CUGU	chr8:145657651-145657937(-)$1	286	53	57	12.0000
CUGU	chr2:131809575-131809857(-)$1	282	21	25	12.0000
CUGU	chr1:22149124-22149375(-)$1	251	40	44	12.0000
CUGU	chr19:54972194-54972405(+)$1	211	71	75	12.0000
CUGU	chr19:10406721-10406970(+)$1	249	218	222	12.0000
CUGU	chr1:6650956-6651223(-)$1	267	3	7	12.0000
CUGU	chr1:153599856-153600156(-)$1	300	65	69	12.0000
CUGU	chr20:36146132-36146380(-)$1	248	226	230	12.0000
CUGU	chr17:79974722-79975013(+)$1	291	72	76	12.0000
CUGU	chr19:49378970-49379289(+)$1	319	147	151	12.0000
CUGU	chr20:17594281-17594585(-)$1	304	69	73	12.0000
CUGU	chr17:34052794-34053097(+)$1	303	246	250	12.0000
CUGU	chr19:14203544-14203788(-)$1	244	153	157	12.0000
CUGU	chr9:130697423-130697717(-)$1	294	46	50	12.0000
CUGU	chr12:49724550-49724820(+)$1	270	225	229	12.0000
CUGU	chr10:88719657-88719892(+)$1	235	142	146	12.0000
CUGU	chr19:4839026-4839286(-)$1	260	15	19	12.0000
CUGU	chr7:100172440-100172657(-)$1	217	191	195	12.0000
CUGU	chr11:62392827-62393076(-)$1	249	28	32	12.0000
CUGU	chr4:77969501-77969776(-)$1	275	83	87	12.0000
CUGU	chr7:75615168-75615397(+)$1	229	95	99	12.0000
CUGU	chr20:57570626-57570883(-)$1	257	152	156	12.0000
CUGU	chr7:128498809-128499070(+)$1	261	124	128	12.0000
CUGU	chr1:150547240-150547490(-)$1	250	3	7	12.0000
CUGU	chr11:65421230-65421485(-)$1	255	76	80	12.0000
CUGU	chr16:30995300-30995559(+)$1	259	5	9	12.0000
CUGU	chr9:140137864-140138146(+)$1	282	202	206	12.0000
CUGU	chr6:30880977-30881232(+)$1	255	112	116	12.0000
CUGU	chr19:49464562-49464839(+)$1	277	216	220	12.0000
CUGU	chr11:46405055-46405311(+)$1	256	85	89	12.0000
CUGU	chr6:34214360-34214622(-)$1	262	116	120	12.0000
CUGU	chr11:71949882-71950125(+)$1	243	0	4	12.0000
CUGU	chr14:23033884-23034137(-)$1	253	10	14	12.0000
CUGU	chr19:14041396-14041647(+)$1	251	44	48	12.0000
CUGU	chr16:3073135-3073403(-)$1	268	63	67	12.0000
CUGU	chr22:35817209-35817487(+)$1	278	86	90	12.0000
CUGU	chr12:57647626-57647895(-)$1	269	250	254	12.0000

#otherMatches

#Struct PSSM
hhhh	chr1:59247138-59247424(-)$1	286	55	59	12.0000
JJJJ	chr3:48481604-48481822(+)$1	218	30	34	12.0000
ffff	chr6:33246921-33247231(-)$1	310	46	50	12.0000
fff:	chr19:1853018-1853291(-)$1	273	170	174	12.0000
ggg:	chr16:315386-315618(+)$1	232	74	78	12.0000
gg++	chr16:2820926-2821145(+)$1	219	105	109	12.0000
===!	chr2:27249705-27249965(+)$1	260	76	80	12.0000
gggg	chr7:100888142-100888444(-)$1	302	113	117	12.0000
GGGG	chr2:27249612-27249855(+)$1	243	169	173	12.0000
::gg	chr16:89663353-89663615(+)$1	262	85	89	12.0000
nbb]	chr17:3827296-3827549(-)$1	253	165	169	12.0000
cc[a	chr17:48462523-48462753(-)$1	230	20	24	12.0000
!!ee	chr9:131770813-131771099(-)$1	286	36	40	12.0000
dd!!	chr19:42736109-42736402(-)$1	293	60	64	12.0000
22ee	chr5:177577303-177577556(+)$1	253	49	53	12.0000
::cc	chr9:139566683-139566953(+)$1	270	249	253	12.0000
mccc	chr17:61822878-61823151(-)$1	273	146	150	12.0000
:EEE	chr16:450306-450647(+)$1	341	121	125	12.0000
CCC{	chr16:767122-767406(+)$1	284	8	12	12.0000
ffff	chr16:88876451-88876656(-)$1	205	40	44	12.0000
bnnn	chr8:144662587-144662844(-)$1	257	31	35	12.0000
ee44	chr1:150594825-150595102(-)$1	277	211	215	12.0000
eeee	chr19:35770258-35770532(+)$1	274	53	57	12.0000
h:BB	chr15:74701883-74702160(-)$1	277	245	249	12.0000
::EE	chr10:70744587-70744850(+)$1	263	3	7	12.0000
E===	chr11:70281333-70281576(+)$1	243	23	27	12.0000
booo	chr17:79991718-79992015(+)$1	297	42	46	12.0000
::::	chr1:220321093-220321383(+)$1	290	45	49	12.0000
eeee	chr22:50942695-50943007(-)$1	312	94	98	12.0000
!!bb	chr19:39405991-39406249(-)$1	258	75	79	12.0000
g[a[	chr22:19754360-19754617(+)$1	257	38	42	12.0000
ffff	chr16:30007476-30007749(+)$1	273	257	261	12.0000
EEEE	chr9:139734799-139735040(+)$1	241	215	219	12.0000
FFFF	chr11:63990837-63991122(+)$1	285	43	47	12.0000
::DD	chr8:21939708-21939997(+)$1	289	261	265	12.0000
6666	chr15:49170829-49171090(+)$1	261	80	84	12.0000
===:	chr9:131770613-131770927(-)$1	314	83	87	12.0000
cccC	chr19:17342822-17343124(-)$1	302	96	100	12.0000
GGGG	chr19:15491039-15491308(-)$1	269	5	9	12.0000
ee]a	chr11:57509563-57509819(+)$1	256	117	121	12.0000
ccc2	chr19:2755421-2755678(-)$1	257	148	152	12.0000
eeee	chr7:1607011-1607305(-)$1	294	148	152	12.0000
cc]c	chr19:50063807-50064049(-)$1	242	46	50	12.0000
BFFF	chr7:99750922-99751241(+)$1	319	30	34	12.0000
""ee	chr11:252588-252845(+)$1	257	124	128	12.0000
qqqq	chr9:130647586-130647912(-)$1	326	29	33	12.0000
A{A{	chr8:145657651-145657937(-)$1	286	53	57	12.0000
nggg	chr2:131809575-131809857(-)$1	282	21	25	12.0000
ddff	chr1:22149124-22149375(-)$1	251	40	44	12.0000
ddd!	chr19:54972194-54972405(+)$1	211	71	75	12.0000
==22	chr19:10406721-10406970(+)$1	249	218	222	12.0000
{HHH	chr1:6650956-6651223(-)$1	267	3	7	12.0000
gggg	chr1:153599856-153600156(-)$1	300	65	69	12.0000
}FFF	chr20:36146132-36146380(-)$1	248	226	230	12.0000
33ii	chr17:79974722-79975013(+)$1	291	72	76	12.0000
CCCW	chr19:49378970-49379289(+)$1	319	147	151	12.0000
5555	chr20:17594281-17594585(-)$1	304	69	73	12.0000
ooog	chr17:34052794-34053097(+)$1	303	246	250	12.0000
DDD:	chr19:14203544-14203788(-)$1	244	153	157	12.0000
:eee	chr9:130697423-130697717(-)$1	294	46	50	12.0000
2ddd	chr12:49724550-49724820(+)$1	270	225	229	12.0000
eeee	chr10:88719657-88719892(+)$1	235	142	146	12.0000
dddd	chr19:4839026-4839286(-)$1	260	15	19	12.0000
esss	chr7:100172440-100172657(-)$1	217	191	195	12.0000
CCC:	chr11:62392827-62393076(-)$1	249	28	32	12.0000
ddd[	chr4:77969501-77969776(-)$1	275	83	87	12.0000
EEEE	chr7:75615168-75615397(+)$1	229	95	99	12.0000
DDDD	chr20:57570626-57570883(-)$1	257	152	156	12.0000
bbqq	chr7:128498809-128499070(+)$1	261	124	128	12.0000
eeee	chr1:150547240-150547490(-)$1	250	3	7	12.0000
EELL	chr11:65421230-65421485(-)$1	255	76	80	12.0000
ennn	chr16:30995300-30995559(+)$1	259	5	9	12.0000
ff]d	chr9:140137864-140138146(+)$1	282	202	206	12.0000
DDDD	chr6:30880977-30881232(+)$1	255	112	116	12.0000
dddm	chr19:49464562-49464839(+)$1	277	216	220	12.0000
ee::	chr11:46405055-46405311(+)$1	256	85	89	12.0000
b]cc	chr6:34214360-34214622(-)$1	262	116	120	12.0000
HHHH	chr11:71949882-71950125(+)$1	243	0	4	12.0000
nnnn	chr14:23033884-23034137(-)$1	253	10	14	12.0000
eee"	chr19:14041396-14041647(+)$1	251	44	48	12.0000
bb]d	chr16:3073135-3073403(-)$1	268	63	67	12.0000
gggg	chr22:35817209-35817487(+)$1	278	86	90	12.0000
::::	chr12:57647626-57647895(-)$1	269	250	254	12.0000

#DB
((((	chr1:59247138-59247424(-)$1	1	55	59	12.0000
((((	chr3:48481604-48481822(+)$1	1	30	34	12.0000
((((	chr6:33246921-33247231(-)$1	1	46	50	12.0000
))).	chr19:1853018-1853291(-)$1	1	170	174	12.0000
))).	chr16:315386-315618(+)$1	1	74	78	12.0000
((..	chr16:2820926-2821145(+)$1	1	105	109	12.0000
(((.	chr2:27249705-27249965(+)$1	1	76	80	12.0000
))))	chr7:100888142-100888444(-)$1	1	113	117	12.0000
))))	chr2:27249612-27249855(+)$1	1	169	173	12.0000
..((	chr16:89663353-89663615(+)$1	1	85	89	12.0000
.)).	chr17:3827296-3827549(-)$1	1	165	169	12.0000
((.(	chr17:48462523-48462753(-)$1	1	20	24	12.0000
..((	chr9:131770813-131771099(-)$1	1	36	40	12.0000
((..	chr19:42736109-42736402(-)$1	1	60	64	12.0000
..))	chr5:177577303-177577556(+)$1	1	49	53	12.0000
..((	chr9:139566683-139566953(+)$1	1	249	253	12.0000
.)))	chr17:61822878-61823151(-)$1	1	146	150	12.0000
.(((	chr16:450306-450647(+)$1	1	121	125	12.0000
(((.	chr16:767122-767406(+)$1	1	8	12	12.0000
))))	chr16:88876451-88876656(-)$1	1	40	44	12.0000
(...	chr8:144662587-144662844(-)$1	1	31	35	12.0000
))..	chr1:150594825-150595102(-)$1	1	211	215	12.0000
((((	chr19:35770258-35770532(+)$1	1	53	57	12.0000
).))	chr15:74701883-74702160(-)$1	1	245	249	12.0000
..((	chr10:70744587-70744850(+)$1	1	3	7	12.0000
((((	chr11:70281333-70281576(+)$1	1	23	27	12.0000
(...	chr17:79991718-79992015(+)$1	1	42	46	12.0000
....	chr1:220321093-220321383(+)$1	1	45	49	12.0000
((((	chr22:50942695-50943007(-)$1	1	94	98	12.0000
..((	chr19:39405991-39406249(-)$1	1	75	79	12.0000
(.(.	chr22:19754360-19754617(+)$1	1	38	42	12.0000
))))	chr16:30007476-30007749(+)$1	1	257	261	12.0000
))))	chr9:139734799-139735040(+)$1	1	215	219	12.0000
((((	chr11:63990837-63991122(+)$1	1	43	47	12.0000
..))	chr8:21939708-21939997(+)$1	1	261	265	12.0000
....	chr15:49170829-49171090(+)$1	1	80	84	12.0000
))).	chr9:131770613-131770927(-)$1	1	83	87	12.0000
))))	chr19:17342822-17343124(-)$1	1	96	100	12.0000
((((	chr19:15491039-15491308(-)$1	1	5	9	12.0000
)).)	chr11:57509563-57509819(+)$1	1	117	121	12.0000
))).	chr19:2755421-2755678(-)$1	1	148	152	12.0000
((((	chr7:1607011-1607305(-)$1	1	148	152	12.0000
)).)	chr19:50063807-50064049(-)$1	1	46	50	12.0000
((((	chr7:99750922-99751241(+)$1	1	30	34	12.0000
..((	chr11:252588-252845(+)$1	1	124	128	12.0000
....	chr9:130647586-130647912(-)$1	1	29	33	12.0000
(.(.	chr8:145657651-145657937(-)$1	1	53	57	12.0000
.)))	chr2:131809575-131809857(-)$1	1	21	25	12.0000
((((	chr1:22149124-22149375(-)$1	1	40	44	12.0000
(((.	chr19:54972194-54972405(+)$1	1	71	75	12.0000
))..	chr19:10406721-10406970(+)$1	1	218	222	12.0000
.(((	chr1:6650956-6651223(-)$1	1	3	7	12.0000
))))	chr1:153599856-153600156(-)$1	1	65	69	12.0000
.)))	chr20:36146132-36146380(-)$1	1	226	230	12.0000
..))	chr17:79974722-79975013(+)$1	1	72	76	12.0000
(((.	chr19:49378970-49379289(+)$1	1	147	151	12.0000
....	chr20:17594281-17594585(-)$1	1	69	73	12.0000
...)	chr17:34052794-34053097(+)$1	1	246	250	12.0000
(((.	chr19:14203544-14203788(-)$1	1	153	157	12.0000
.(((	chr9:130697423-130697717(-)$1	1	46	50	12.0000
.)))	chr12:49724550-49724820(+)$1	1	225	229	12.0000
((((	chr10:88719657-88719892(+)$1	1	142	146	12.0000
((((	chr19:4839026-4839286(-)$1	1	15	19	12.0000
(...	chr7:100172440-100172657(-)$1	1	191	195	12.0000
(((.	chr11:62392827-62393076(-)$1	1	28	32	12.0000
(((.	chr4:77969501-77969776(-)$1	1	83	87	12.0000
((((	chr7:75615168-75615397(+)$1	1	95	99	12.0000
))))	chr20:57570626-57570883(-)$1	1	152	156	12.0000
((..	chr7:128498809-128499070(+)$1	1	124	128	12.0000
((((	chr1:150547240-150547490(-)$1	1	3	7	12.0000
((..	chr11:65421230-65421485(-)$1	1	76	80	12.0000
(...	chr16:30995300-30995559(+)$1	1	5	9	12.0000
)).)	chr9:140137864-140138146(+)$1	1	202	206	12.0000
((((	chr6:30880977-30881232(+)$1	1	112	116	12.0000
(((.	chr19:49464562-49464839(+)$1	1	216	220	12.0000
))..	chr11:46405055-46405311(+)$1	1	85	89	12.0000
).))	chr6:34214360-34214622(-)$1	1	116	120	12.0000
((((	chr11:71949882-71950125(+)$1	1	0	4	12.0000
....	chr14:23033884-23034137(-)$1	1	10	14	12.0000
(((.	chr19:14041396-14041647(+)$1	1	44	48	12.0000
)).)	chr16:3073135-3073403(-)$1	1	63	67	12.0000
))))	chr22:35817209-35817487(+)$1	1	86	90	12.0000
....	chr12:57647626-57647895(-)$1	1	250	254	12.0000

#PSSM
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	
U : 0.97	u : 0.02	

#score	996.0000000000002
#seq	83
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_UTR_m1_run2.nuc.txt

#NT
CCGCCCAGC	chr11:64534372-64534628(-)$1	256	208	217	18.5740
ccgcgcagc	chr11:61734926-61735131(-)$1	205	189	198	14.4999
CAGUCCAGC	chr17:38324373-38324667(+)$1	294	12	21	11.5370
CCUCCAAGC	chr6:30692697-30692921(+)$1	224	41	50	12.9259
UCUCCCAGC	chr16:2569954-2570173(+)$1	219	128	137	13.6666
GCCCCCAGC	chr1:161141494-161141817(-)$1	323	148	157	14.0370
CAGCCCAGC	chr16:57287113-57287379(+)$1	266	106	115	15.7962
CCUCCCAGG	chr14:102391465-102391753(+)$1	288	124	133	12.8333
CCACCCAGC	chr6:32136237-32136471(-)$1	234	121	130	17.2777
CCGCCCUAC	chr17:73843466-73843729(-)$1	263	98	107	10.9814
CCUCACAGC	chr14:74182417-74182691(-)$1	274	97	106	13.8518
CUGCCCUGC	chr1:155979082-155979329(-)$1	247	134	143	11.5370
CUGCCCAGC	chr19:48245013-48245274(+)$1	261	204	213	15.1481
CCUACCAGC	chr8:101721588-101721798(-)$1	210	62	71	13.2962
CCCCCCGGC	chr22:39129062-39129314(+)$1	252	13	22	13.7592
CAGCACAGC	chr17:27086072-27086326(-)$1	254	121	130	12.0925
CCUCCCUGC	chr19:41859139-41859423(-)$1	284	14	23	13.9444
CCACCCAAC	chr1:155259984-155260240(-)$1	256	117	126	13.2962
CUGCCCAAC	chr1:167759398-167759681(+)$1	283	143	152	11.1666
ccucccagc	chr22:39415314-39415534(+)$1	220	2	11	17.5555
ccgccccgc	chr7:97910891-97911185(+)$1	294	78	87	14.8703
CAGCACAGC	chr6:31477534-31477842(+)$1	308	84	93	12.0925
CCCUCCAGC	chrX:152960776-152961024(+)$1	248	110	119	13.4814
UCCCCCAGC	chr6:34213118-34213340(+)$1	222	80	89	13.8518
CCAGCCAGC	chr16:28845847-28846077(+)$1	230	10	19	13.0185
CCUCACAGC	chr12:54063570-54063823(-)$1	253	101	110	13.8518
CCCGCCAGC	chr3:47454291-47454579(+)$1	288	59	68	13.4814
CCCCCCUGC	chr19:42703027-42703316(-)$1	289	27	36	14.1296
CCCCCCUGC	chr19:42703178-42703426(-)$1	248	137	146	14.1296
CCACUCAGC	chr1:27730724-27730966(-)$1	242	226	235	13.3888
CCGCCCAGC	chr14:23594744-23595045(-)$1	301	163	172	18.5740
CCGCCCACC	chr6:34212869-34213097(+)$1	228	31	40	14.4999
GCUCCCAGC	chr19:19010365-19010634(-)$1	269	132	141	13.8518
GCGCCCCGC	chr20:62152026-62152244(+)$1	218	26	35	11.1666
CCUCCCAAC	chr11:126133040-126133272(-)$1	232	124	133	13.5740
CAGCUCAGC	chr17:46699713-46699944(-)$1	231	78	87	11.9074
CCACACAGC	chr16:28846509-28846768(+)$1	259	119	128	13.5740
CCACCCAGC	chr11:59568371-59568650(+)$1	279	200	209	17.2777
AAGCCCAGC	chr8:124221793-124222059(+)$1	266	87	96	11.7222
CCUCUCAGC	chr1:10132008-10132324(+)$1	316	117	126	13.6666
CGCCCCAGC	chr1:93645599-93645917(-)$1	318	105	114	14.1296
gcacccagc	chr19:41937330-41937593(-)$1	263	134	143	13.5740
CAGCCCAGC	chr6:36936496-36936757(-)$1	261	187	196	15.7962
CCCCCAAGC	chr14:23595565-23595807(-)$1	242	48	57	13.1111
GCGCCCAGC	chr19:47291371-47291607(-)$1	236	179	188	14.8703
UCACCCAGC	chr16:139610-139866(-)$1	256	47	56	13.3888
CCCCCCAGU	chr17:27086400-27086657(-)$1	257	70	79	13.0185
CCGCCCAGC	chr16:2220602-2220832(+)$1	230	213	222	18.5740
CACCCCAGC	chr11:119207778-119208028(+)$1	250	6	15	14.9629
CCCCCCCGC	chr3:52559134-52559405(-)$1	271	231	240	14.0370
CCCACCAGC	chr12:124824450-124824686(-)$1	236	8	17	13.4814
CAGCCCACC	chr22:42301557-42301779(+)$1	222	117	126	11.7222
ccgcccacc	chr4:110354888-110355184(+)$1	296	91	100	14.4999

#otherMatches

#Struct PSSM
B}FFFFFFZ	chr3:184033822-184034070(+)$1	248	172	181	12.0925
AEEEEECCC	chr11:64534372-64534628(-)$1	256	208	217	18.5740
]bb]bb:BB	chr11:61734926-61735131(-)$1	205	189	198	14.4999
ddd"""ccc	chr17:38324373-38324667(+)$1	294	12	21	11.5370
hhh::::::	chr6:30692697-30692921(+)$1	224	41	50	12.9259
::::::::g	chr16:2569954-2570173(+)$1	219	128	137	13.6666
ccnnnnncc	chr1:161141494-161141817(-)$1	323	148	157	14.0370
:dddd[fff	chr16:57287113-57287379(+)$1	266	106	115	15.7962
ddbbmmmmb	chr14:102391465-102391753(+)$1	288	124	133	12.8333
H::FFFFFF	chr6:32136237-32136471(-)$1	234	121	130	17.2777
!!ddddooo	chr17:73843466-73843729(-)$1	263	98	107	10.9814
vvvvvvvcc	chr14:74182417-74182691(-)$1	274	97	106	13.8518
dd"""bbcc	chr1:155979082-155979329(-)$1	247	134	143	11.5370
::DDDD}FF	chr19:48245013-48245274(+)$1	261	204	213	15.1481
^^^^^^^^^	chr8:101721588-101721798(-)$1	210	62	71	13.2962
ccmmmmccc	chr22:39129062-39129314(+)$1	252	13	22	13.7592
!!dddd[bb	chr17:27086072-27086326(-)$1	254	121	130	12.0925
((((((ddd	chr19:41859139-41859423(-)$1	284	14	23	13.9444
mmmmccc33	chr1:155259984-155260240(-)$1	256	117	126	13.2962
g:DDDDZZZ	chr1:167759398-167759681(+)$1	283	143	152	11.1666
:::::::::	chr22:39415314-39415534(+)$1	220	2	11	17.5555
{BBLLLEEE	chr7:97910891-97911185(+)$1	294	78	87	14.8703
ccc"""fff	chr6:31477534-31477842(+)$1	308	84	93	12.0925
GGGGGGYYF	chrX:152960776-152961024(+)$1	248	110	119	13.4814
gggggcccn	chr6:34213118-34213340(+)$1	222	80	89	13.8518
eeeee[ddd	chr16:28845847-28846077(+)$1	230	10	19	13.0185
ff$$$$$ee	chr12:54063570-54063823(-)$1	253	101	110	13.8518
bb666666=	chr3:47454291-47454579(+)$1	288	59	68	13.4814
GGGGKKCCC	chr19:42703027-42703316(-)$1	289	27	36	14.1296
eeee::ddd	chr19:42703178-42703426(-)$1	248	137	146	14.1296
ZDDDD::::	chr1:27730724-27730966(-)$1	242	226	235	13.3888
^^^^^^^^^	chr14:23594744-23595045(-)$1	301	163	172	18.5740
::::ccc$$	chr6:34212869-34213097(+)$1	228	31	40	14.4999
dddlllddd	chr19:19010365-19010634(-)$1	269	132	141	13.8518
a]iiiiiii	chr20:62152026-62152244(+)$1	218	26	35	11.1666
mmmmbb:::	chr11:126133040-126133272(-)$1	232	124	133	13.5740
+ffffff[a	chr17:46699713-46699944(-)$1	231	78	87	11.9074
]hhhhhhhh	chr16:28846509-28846768(+)$1	259	119	128	13.5740
:::::dddd	chr11:59568371-59568650(+)$1	279	200	209	17.2777
eeee333gg	chr8:124221793-124222059(+)$1	266	87	96	11.7222
zzzzzzzzz	chr1:10132008-10132324(+)$1	316	117	126	13.6666
mmccc22bb	chr1:93645599-93645917(-)$1	318	105	114	14.1296
ccnnnnncc	chr19:41937330-41937593(-)$1	263	134	143	13.5740
!eeeeemmm	chr6:36936496-36936757(-)$1	261	187	196	15.7962
33bb22ccc	chr14:23595565-23595807(-)$1	242	48	57	13.1111
f[bblllbb	chr19:47291371-47291607(-)$1	236	179	188	14.8703
!!ddddbb[	chr16:139610-139866(-)$1	256	47	56	13.3888
:::bbhhhh	chr17:27086400-27086657(-)$1	257	70	79	13.0185
a]bb:::::	chr16:2220602-2220832(+)$1	230	213	222	18.5740
coooooocc	chr11:119207778-119208028(+)$1	250	6	15	14.9629
c]ggggggg	chr3:52559134-52559405(-)$1	271	231	240	14.0370
GGGGGGGCC	chr12:124824450-124824686(-)$1	236	8	17	13.4814
FKKFFFFFF	chr22:42301557-42301779(+)$1	222	117	126	11.7222
UDDDDDDDD	chr4:110354888-110355184(+)$1	296	91	100	14.4999

#DB
).)))))).	chr3:184033822-184034070(+)$1	1	172	181	12.0925
)))))))))	chr11:64534372-64534628(-)$1	1	208	217	18.5740
.)).)).))	chr11:61734926-61735131(-)$1	1	189	198	14.4999
(((...(((	chr17:38324373-38324667(+)$1	1	12	21	11.5370
)))......	chr6:30692697-30692921(+)$1	1	41	50	12.9259
........(	chr16:2569954-2570173(+)$1	1	128	137	13.6666
((.....))	chr1:161141494-161141817(-)$1	1	148	157	14.0370
.((((.(((	chr16:57287113-57287379(+)$1	1	106	115	15.7962
((((....)	chr14:102391465-102391753(+)$1	1	124	133	12.8333
)..((((((	chr6:32136237-32136471(-)$1	1	121	130	17.2777
..((((...	chr17:73843466-73843729(-)$1	1	98	107	10.9814
.......))	chr14:74182417-74182691(-)$1	1	97	106	13.8518
((...((((	chr1:155979082-155979329(-)$1	1	134	143	11.5370
..)))).))	chr19:48245013-48245274(+)$1	1	204	213	15.1481
.........	chr8:101721588-101721798(-)$1	1	62	71	13.2962
((....)))	chr22:39129062-39129314(+)$1	1	13	22	13.7592
..((((.((	chr17:27086072-27086326(-)$1	1	121	130	12.0925
......(((	chr19:41859139-41859423(-)$1	1	14	23	13.9444
....)))..	chr1:155259984-155260240(-)$1	1	117	126	13.2962
).))))...	chr1:167759398-167759681(+)$1	1	143	152	11.1666
.........	chr22:39415314-39415534(+)$1	1	2	11	17.5555
.((...(((	chr7:97910891-97911185(+)$1	1	78	87	14.8703
(((...(((	chr6:31477534-31477842(+)$1	1	84	93	12.0925
))))))..)	chrX:152960776-152961024(+)$1	1	110	119	13.4814
)))))(((.	chr6:34213118-34213340(+)$1	1	80	89	13.8518
(((((.(((	chr16:28845847-28846077(+)$1	1	10	19	13.0185
((.....((	chr12:54063570-54063823(-)$1	1	101	110	13.8518
))......)	chr3:47454291-47454579(+)$1	1	59	68	13.4814
((((..(((	chr19:42703027-42703316(-)$1	1	27	36	14.1296
))))..(((	chr19:42703178-42703426(-)$1	1	137	146	14.1296
.))))....	chr1:27730724-27730966(-)$1	1	226	235	13.3888
.........	chr14:23594744-23595045(-)$1	1	163	172	18.5740
....(((..	chr6:34212869-34213097(+)$1	1	31	40	14.4999
(((...)))	chr19:19010365-19010634(-)$1	1	132	141	13.8518
).)))))))	chr20:62152026-62152244(+)$1	1	26	35	11.1666
....))...	chr11:126133040-126133272(-)$1	1	124	133	13.5740
.((((((.(	chr17:46699713-46699944(-)$1	1	78	87	11.9074
.))))))))	chr16:28846509-28846768(+)$1	1	119	128	13.5740
.....((((	chr11:59568371-59568650(+)$1	1	200	209	17.2777
))))...))	chr8:124221793-124222059(+)$1	1	87	96	11.7222
.........	chr1:10132008-10132324(+)$1	1	117	126	13.6666
..)))..))	chr1:93645599-93645917(-)$1	1	105	114	14.1296
((.....))	chr19:41937330-41937593(-)$1	1	134	143	13.5740
.(((((...	chr6:36936496-36936757(-)$1	1	187	196	15.7962
..))..)))	chr14:23595565-23595807(-)$1	1	48	57	13.1111
(.((...))	chr19:47291371-47291607(-)$1	1	179	188	14.8703
..((((((.	chr16:139610-139866(-)$1	1	47	56	13.3888
...((((((	chr17:27086400-27086657(-)$1	1	70	79	13.0185
).)).....	chr16:2220602-2220832(+)$1	1	213	222	18.5740
(......))	chr11:119207778-119208028(+)$1	1	6	15	14.9629
).)))))))	chr3:52559134-52559405(-)$1	1	231	240	14.0370
(((((((((	chr12:124824450-124824686(-)$1	1	8	17	13.4814
(..((((((	chr22:42301557-42301779(+)$1	1	117	126	11.7222
.((((((((	chr4:110354888-110355184(+)$1	1	91	100	14.4999

#PSSM
C : 0.75	c : 0.07	G : 0.07	U : 0.05	A : 0.01	g : 0.01	
C : 0.64	A : 0.18	c : 0.09	U : 0.05	G : 0.01	
G : 0.35	C : 0.24	U : 0.18	A : 0.12	g : 0.05	u : 0.01	a : 0.01	
C : 0.79	c : 0.09	U : 0.03	A : 0.03	G : 0.03	
C : 0.75	A : 0.09	c : 0.07	U : 0.05	g : 0.01	
C : 0.87	c : 0.09	A : 0.03	
A : 0.74	U : 0.09	a : 0.07	C : 0.05	G : 0.01	c : 0.01	
G : 0.79	g : 0.07	A : 0.07	C : 0.03	c : 0.01	
C : 0.87	c : 0.09	G : 0.01	U : 0.01	

#score	751.1481481481474
#seq	54
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_CDS_m3_run1.nuc.txt

#NT
UUUCAG	chr6:10728818-10729060(+)$1	242	225	231	14.6666
UUUAAG	chr10:70847846-70848077(+)$1	231	220	226	11.0158
UUCCAG	chr1:116943758-116943981(+)$1	223	107	113	11.0952
CUUCAG	chr2:10927315-10927564(-)$1	249	125	131	10.3809
UUGCAG	chr11:14495958-14496213(-)$1	255	46	52	10.6190
UUUCAU	chr16:310035-310260(+)$1	225	98	104	10.4603
AUUCAG	chr17:57741133-57741387(+)$1	254	165	171	10.3015
UUUCAU	chrX:77380767-77381003(+)$1	236	43	49	10.4603
UGUCAG	chr9:128001234-128001466(-)$1	232	81	87	10.7777
UCUCAG	chr5:177019569-177019776(+)$1	207	140	146	10.6984
UUUCAG	chr15:45007702-45007927(+)$1	225	75	81	14.6666
UUUCAG	chr5:96129404-96129643(-)$1	239	3	9	14.6666
GUUCAG	chr19:48892747-48892983(-)$1	236	98	104	10.2222
UUCCAG	chr12:104336353-104336572(+)$1	219	110	116	11.0952
UUUCAC	chr20:35858278-35858482(+)$1	204	44	50	10.3015
UUUCAG	chr2:10929817-10930036(-)$1	219	48	54	14.6666
UUUCAG	chr2:223781047-223781312(+)$1	265	160	166	14.6666
CUUCAG	chr16:88709753-88710017(-)$1	264	22	28	10.3809
UUUCAG	chr15:65864488-65864805(+)$1	317	78	84	14.6666
UUUCAG	chr11:125476210-125476460(+)$1	250	173	179	14.6666
UUUCAG	chr12:50155432-50155662(+)$1	230	48	54	14.6666
uuugag	chr1:156280248-156280477(-)$1	229	194	200	10.5396
UUGCAG	chr1:54497858-54498078(-)$1	220	94	100	10.6190
UGUCAG	chr17:46135588-46135842(+)$1	254	175	181	10.7777
UUUAAG	chr2:113410178-113410408(+)$1	230	68	74	11.0158
UUUCAG	chr5:179149823-179150032(+)$1	209	37	43	14.6666
UUUCAG	chr6:122774893-122775125(-)$1	232	67	73	14.6666
UUUUAG	chr21:33038686-33038932(+)$1	246	11	17	10.6190
UUUAAG	chr7:10978336-10978576(-)$1	240	9	15	11.0158
UUUCAG	chr12:46756746-46756972(-)$1	226	190	196	14.6666
UUCCAG	chr19:11215811-11216048(+)$1	237	227	233	11.0952
UUUCAA	chr2:201680077-201680334(+)$1	257	15	21	10.4603
UUCCAG	chr19:48832611-48832840(+)$1	229	71	77	11.0952
UUUCAG	chr1:111434868-111435093(+)$1	225	92	98	14.6666
UUUCAG	chr6:49578676-49578897(-)$1	221	180	186	14.6666
UUUCAG	chr1:109944531-109944814(-)$1	283	213	219	14.6666
UUCCAG	chr11:125479285-125479549(+)$1	264	193	199	11.0952
UUUCAG	chr1:19553706-19554002(-)$1	296	5	11	14.6666
UGUCAG	chr15:64452233-64452467(-)$1	234	195	201	10.7777
UUUCAG	chr4:155459024-155459326(-)$1	302	60	66	14.6666
UUUCAA	chr5:179135881-179136091(+)$1	210	53	59	10.4603
UCUCAG	chr4:109571812-109572048(+)$1	236	216	222	10.6984
UGUCAG	chr2:120012188-120012527(+)$1	339	65	71	10.7777
UUUCAG	chr5:133944003-133944294(-)$1	291	95	101	14.6666
UUUCAG	chr12:98941251-98941470(+)$1	219	156	162	14.6666
UCUCAG	chr11:102272169-102272407(-)$1	238	221	227	10.6984
UUCCAG	chr1:120277859-120278165(+)$1	306	52	58	11.0952
UUUCAG	chr1:224377530-224377780(+)$1	250	133	139	14.6666
UGUCAG	chr11:60687230-60687503(+)$1	273	164	170	10.7777
CUUCAG	chr13:46732938-46733222(-)$1	284	73	79	10.3809
UUCCAG	chr11:62400868-62401086(-)$1	218	94	100	11.0952
UUUAAG	chr12:53345802-53346128(+)$1	326	319	325	11.0158
UUUAAG	chr7:10978376-10978606(-)$1	230	39	45	11.0158
AUUCAG	chr19:13050956-13051161(+)$1	205	44	50	10.3015
UUUCAG	chr12:69745899-69746178(+)$1	279	94	100	14.6666
UUUCAG	chr6:31829032-31829303(-)$1	271	70	76	14.6666
UUUAAG	chr17:57742105-57742338(+)$1	233	19	25	11.0158
UUUUAG	chr3:195796264-195796515(-)$1	251	21	27	10.6190
UUUCAA	chr3:141634750-141634962(+)$1	212	104	110	10.4603
UUUCAU	chr15:44062382-44062627(+)$1	245	232	238	10.4603
UUUAAG	chr18:43668041-43668322(-)$1	281	57	63	11.0158
UCUCAG	chr7:100855459-100855679(-)$1	220	79	85	10.6984

#otherMatches

#Struct PSSM
:::::E	chrX:23700412-23700633(+)$1	221	203	209	11.0952
::dddd	chr6:10728818-10729060(+)$1	242	225	231	14.6666
rrcccc	chr10:70847846-70848077(+)$1	231	220	226	11.0158
g]ccc]	chr1:116943758-116943981(+)$1	223	107	113	11.0952
ammmma	chr2:10927315-10927564(-)$1	249	125	131	10.3809
22dddd	chr11:14495958-14496213(-)$1	255	46	52	10.6190
::::::	chr16:310035-310260(+)$1	225	98	104	10.4603
======	chr17:57741133-57741387(+)$1	254	165	171	10.3015
HHHHHH	chrX:77380767-77381003(+)$1	236	43	49	10.4603
ddddoo	chr9:128001234-128001466(-)$1	232	81	87	10.7777
oooooc	chr5:177019569-177019776(+)$1	207	140	146	10.6984
fffmmm	chr15:45007702-45007927(+)$1	225	75	81	14.6666
::gggg	chr5:96129404-96129643(-)$1	239	3	9	14.6666
dd[hhh	chr19:48892747-48892983(-)$1	236	98	104	10.2222
eee22f	chr12:104336353-104336572(+)$1	219	110	116	11.0952
^^^^^^	chr20:35858278-35858482(+)$1	204	44	50	10.3015
::hhhh	chr2:10929817-10930036(-)$1	219	48	54	14.6666
""dddd	chr2:223781047-223781312(+)$1	265	160	166	14.6666
)))))e	chr16:88709753-88710017(-)$1	264	22	28	10.3809
:CCC{G	chr15:65864488-65864805(+)$1	317	78	84	14.6666
!!dddd	chr11:125476210-125476460(+)$1	250	173	179	14.6666
{FFFFF	chr12:50155432-50155662(+)$1	230	48	54	14.6666
]ggggg	chr1:156280248-156280477(-)$1	229	194	200	10.5396
::::hh	chr1:54497858-54498078(-)$1	220	94	100	10.6190
:::::e	chr17:46135588-46135842(+)$1	254	175	181	10.7777
"ggggg	chr2:113410178-113410408(+)$1	230	68	74	11.0158
:::DDD	chr5:179149823-179150032(+)$1	209	37	43	14.6666
FFFFFF	chr6:122774893-122775125(-)$1	232	67	73	14.6666
mmmmdd	chr21:33038686-33038932(+)$1	246	11	17	10.6190
JJJJJJ	chr7:10978336-10978576(-)$1	240	9	15	11.0158
elllee	chr12:46756746-46756972(-)$1	226	190	196	14.6666
YYEEEE	chr19:11215811-11216048(+)$1	237	227	233	11.0952
H:eeee	chr2:201680077-201680334(+)$1	257	15	21	10.4603
GGGGGG	chr19:48832611-48832840(+)$1	229	71	77	11.0952
eeDDDD	chr1:111434868-111435093(+)$1	225	92	98	14.6666
$$$ccc	chr6:49578676-49578897(-)$1	221	180	186	14.6666
55dddd	chr1:109944531-109944814(-)$1	283	213	219	14.6666
33ffff	chr11:125479285-125479549(+)$1	264	193	199	11.0952
lllddd	chr1:19553706-19554002(-)$1	296	5	11	14.6666
bboooo	chr15:64452233-64452467(-)$1	234	195	201	10.7777
::::::	chr4:155459024-155459326(-)$1	302	60	66	14.6666
eeee22	chr5:179135881-179136091(+)$1	210	53	59	10.4603
hhhhhh	chr4:109571812-109572048(+)$1	236	216	222	10.6984
$$$$$b	chr2:120012188-120012527(+)$1	339	65	71	10.7777
d[bb[d	chr5:133944003-133944294(-)$1	291	95	101	14.6666
4444dd	chr12:98941251-98941470(+)$1	219	156	162	14.6666
DDFFFF	chr11:102272169-102272407(-)$1	238	221	227	10.6984
ffff55	chr1:120277859-120278165(+)$1	306	52	58	11.0952
======	chr1:224377530-224377780(+)$1	250	133	139	14.6666
d]bb:D	chr11:60687230-60687503(+)$1	273	164	170	10.7777
ccgggg	chr13:46732938-46733222(-)$1	284	73	79	10.3809
)))))c	chr11:62400868-62401086(-)$1	218	94	100	11.0952
cc::::	chr12:53345802-53346128(+)$1	326	319	325	11.0158
JJJJJJ	chr7:10978376-10978606(-)$1	230	39	45	11.0158
:::::d	chr19:13050956-13051161(+)$1	205	44	50	10.3015
ff[ddd	chr12:69745899-69746178(+)$1	279	94	100	14.6666
gFFFFF	chr6:31829032-31829303(-)$1	271	70	76	14.6666
ooooob	chr17:57742105-57742338(+)$1	233	19	25	11.0158
c333dd	chr3:195796264-195796515(-)$1	251	21	27	10.6190
eeeee3	chr3:141634750-141634962(+)$1	212	104	110	10.4603
HHHHH~	chr15:44062382-44062627(+)$1	245	232	238	10.4603
ff[ccc	chr18:43668041-43668322(-)$1	281	57	63	11.0158
ddd]gg	chr7:100855459-100855679(-)$1	220	79	85	10.6984

#DB
.....)	chrX:23700412-23700633(+)$1	1	203	209	11.0952
..((((	chr6:10728818-10729060(+)$1	1	225	231	14.6666
..))))	chr10:70847846-70848077(+)$1	1	220	226	11.0158
).))).	chr1:116943758-116943981(+)$1	1	107	113	11.0952
(....)	chr2:10927315-10927564(-)$1	1	125	131	10.3809
..))))	chr11:14495958-14496213(-)$1	1	46	52	10.6190
......	chr16:310035-310260(+)$1	1	98	104	10.4603
))))))	chr17:57741133-57741387(+)$1	1	165	171	10.3015
((((((	chrX:77380767-77381003(+)$1	1	43	49	10.4603
((((..	chr9:128001234-128001466(-)$1	1	81	87	10.7777
.....)	chr5:177019569-177019776(+)$1	1	140	146	10.6984
(((...	chr15:45007702-45007927(+)$1	1	75	81	14.6666
..((((	chr5:96129404-96129643(-)$1	1	3	9	14.6666
((.(((	chr19:48892747-48892983(-)$1	1	98	104	10.2222
)))..)	chr12:104336353-104336572(+)$1	1	110	116	11.0952
......	chr20:35858278-35858482(+)$1	1	44	50	10.3015
..((((	chr2:10929817-10930036(-)$1	1	48	54	14.6666
..((((	chr2:223781047-223781312(+)$1	1	160	166	14.6666
.....(	chr16:88709753-88710017(-)$1	1	22	28	10.3809
.(((.(	chr15:65864488-65864805(+)$1	1	78	84	14.6666
..((((	chr11:125476210-125476460(+)$1	1	173	179	14.6666
.(((((	chr12:50155432-50155662(+)$1	1	48	54	14.6666
.)))))	chr1:156280248-156280477(-)$1	1	194	200	10.5396
....((	chr1:54497858-54498078(-)$1	1	94	100	10.6190
.....(	chr17:46135588-46135842(+)$1	1	175	181	10.7777
.(((((	chr2:113410178-113410408(+)$1	1	68	74	11.0158
...(((	chr5:179149823-179150032(+)$1	1	37	43	14.6666
((((((	chr6:122774893-122775125(-)$1	1	67	73	14.6666
....))	chr21:33038686-33038932(+)$1	1	11	17	10.6190
((((((	chr7:10978336-10978576(-)$1	1	9	15	11.0158
(...))	chr12:46756746-46756972(-)$1	1	190	196	14.6666
..))))	chr19:11215811-11216048(+)$1	1	227	233	11.0952
(.((((	chr2:201680077-201680334(+)$1	1	15	21	10.4603
((((((	chr19:48832611-48832840(+)$1	1	71	77	11.0952
))))))	chr1:111434868-111435093(+)$1	1	92	98	14.6666
...(((	chr6:49578676-49578897(-)$1	1	180	186	14.6666
..))))	chr1:109944531-109944814(-)$1	1	213	219	14.6666
..))))	chr11:125479285-125479549(+)$1	1	193	199	11.0952
...)))	chr1:19553706-19554002(-)$1	1	5	11	14.6666
((....	chr15:64452233-64452467(-)$1	1	195	201	10.7777
......	chr4:155459024-155459326(-)$1	1	60	66	14.6666
))))..	chr5:179135881-179136091(+)$1	1	53	59	10.4603
))))))	chr4:109571812-109572048(+)$1	1	216	222	10.6984
.....(	chr2:120012188-120012527(+)$1	1	65	71	10.7777
(.((.(	chr5:133944003-133944294(-)$1	1	95	101	14.6666
....))	chr12:98941251-98941470(+)$1	1	156	162	14.6666
))))))	chr11:102272169-102272407(-)$1	1	221	227	10.6984
))))..	chr1:120277859-120278165(+)$1	1	52	58	11.0952
))))))	chr1:224377530-224377780(+)$1	1	133	139	14.6666
).)).)	chr11:60687230-60687503(+)$1	1	164	170	10.7777
((((((	chr13:46732938-46733222(-)$1	1	73	79	10.3809
.....(	chr11:62400868-62401086(-)$1	1	94	100	11.0952
))....	chr12:53345802-53346128(+)$1	1	319	325	11.0158
((((((	chr7:10978376-10978606(-)$1	1	39	45	11.0158
.....(	chr19:13050956-13051161(+)$1	1	44	50	10.3015
((.(((	chr12:69745899-69746178(+)$1	1	94	100	14.6666
)(((((	chr6:31829032-31829303(-)$1	1	70	76	14.6666
.....)	chr17:57742105-57742338(+)$1	1	19	25	11.0158
)...))	chr3:195796264-195796515(-)$1	1	21	27	10.6190
))))).	chr3:141634750-141634962(+)$1	1	104	110	10.4603
))))).	chr15:44062382-44062627(+)$1	1	232	238	10.4603
((.(((	chr18:43668041-43668322(-)$1	1	57	63	11.0158
))).))	chr7:100855459-100855679(-)$1	1	79	85	10.6984

#PSSM
U : 0.88	C : 0.04	A : 0.03	G : 0.01	u : 0.01	
U : 0.84	G : 0.07	C : 0.06	u : 0.01	
U : 0.82	C : 0.12	G : 0.03	u : 0.01	
C : 0.84	A : 0.11	U : 0.03	g : 0.01	
A : 0.98	a : 0.01	
G : 0.87	U : 0.04	A : 0.04	C : 0.01	g : 0.01	

#score	758.6031746031731
#seq	63
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_UTR_m2_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
::eeeee"""bb!!dddd[eeeeeooooooeeeee]dddd22bb22eeeeeffffff[gggggggnnnnnggggggg]ffffff:::::::::::::::eeeee$$$$$bbmmmmbb4444eeeee:EEEEEKKHHHHHHHH{DDDDhhhhhhhhnnnnnhhhhhhhh:::::DDDD{DDDD::dddd[ccc[eeeee[a[bbbbmmmmbb]bb]aeeeee]ccc]dddd::ggggggg!!bbmmmmbb333gggggggDDDDYYDDDDYYDDDDYYHHHHHHHHYYEE	chr19:38795929-38796248(-)$1	319	0	289	867.0000

#DB
..(((((...((..((((.(((((......))))).))))..))..)))))((((((.(((((((.....))))))).))))))...............(((((.....((....))....))))).(((((..((((((((.((((((((((((.....)))))))).....((((.((((..((((.(((.(((((.(.((((....)).)).)))))).))).))))..(((((((..((....))...)))))))))))..))))..))))..))))))))..))	chr19:38795929-38796248(-)$1	1	0	289	867.0000

#PSSM
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	

#score	867.0
#seq	1
#width	289
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_transcript_m1_run1.nuc.txt

#NT
ggugacuCuguguguguguguguguguguguguguguguguAGA	chr1:174243652-174243908(+)$1	256	84	128	89.4999
guaggccguguguguguguguguguguguguguguguguguggu	chr1:175924758-175925026(-)$1	268	82	126	87.6481
ugugugcauguaugugugugugugugugugugugugugugugug	chr6:20909305-20909580(+)$1	275	99	143	100.2407
Gguguguguguguguguguguguguguguguguguguguguggu	chr16:88521455-88521735(+)$1	280	84	128	106.9074
ugugugugugugagucuguguguaugugaguguguguaugugag	chr2:127434876-127435305(+)$1	429	219	263	88.0185
ucuuuguguguguguguguguguguguguguguguguguguuuu	chr1:59124495-59124760(-)$1	265	89	133	101.2592
ugugugugugugugugugugugugugugugugugugugugAGAU	chr7:17900796-17901113(-)$1	317	108	152	105.5185
uguaugugugugugcauguguguguguguguguguguuuguguA	chr10:38128266-38128556(-)$1	290	85	129	95.5185
ugugugugugugugugugugugugugugugugugugugugugug	chr19:48188920-48189182(+)$1	262	78	122	113.1111
UUuguguguguguguguguguguguguguguguguguguguguu	chr2:48131521-48131843(-)$1	322	80	124	109.4074
Aguguguguguguguguguguguguguguguguguguaaaugga	chr9:102954444-102954730(+)$1	286	85	129	94.7777
ugugugugugugugugugugugugugugugugugugugugugug	chr14:76783572-76783842(+)$1	270	81	125	113.1111
ugugugugugugugugugugugugugugugugugugugugugug	chr7:50809799-50810123(-)$1	324	111	155	113.1111
aaaauguguguguguguguguguguguguguguguguguaugau	chr2:128253922-128254177(-)$1	255	12	56	92.6481
uguguguguguguguguguguguguguguguguuugugugugug	chr4:20705016-20705284(+)$1	268	85	129	108.6666
UGUGCACgugugugugugugugugugugugugugugugugugug	chr11:58366138-58366398(+)$1	260	77	121	100.6111
ugugugugugugugugugugugugugugugugugugugugugug	chr19:47774860-47775198(+)$1	338	86	130	113.1111
ugugugugugugugugugugugugugugugugugugugugugug	chr12:122521976-122522256(+)$1	280	74	118	113.1111
gguguguguguguguguguguguguguguguguguguguuuuga	chr9:128391159-128391453(-)$1	294	81	125	99.5925
ugugugugugugugugugugugugugugugugugugugugugug	chr16:23478524-23478834(-)$1	310	79	123	113.1111
UUuguguguguguguguguguguguguguguguguguguguguC	chr5:145530351-145530629(-)$1	278	81	125	108.3888
UAugugugugugugugugugugugugugugugugugugugugua	chr5:134115715-134115984(+)$1	269	71	115	109.3148
uguguggauguggcuguguguguguguguguguguguguguguC	chr19:941762-942017(+)$1	255	3	47	93.5740
ugugugugugugugugugugugugugugugugugugugugugug	chr22:36406639-36406906(-)$1	267	81	125	113.1111
uguguguguguguguguguguguaugugugcgugcauuuguguA	chr6:45322188-45322490(-)$1	302	100	144	91.5370
ugugugugugugugugugugugugugugugugugugugugugug	chr2:187934249-187934519(+)$1	270	75	119	113.1111
ucuguguguguguguguguguguguguguguguguguguguguu	chr6:15282067-15282354(+)$1	287	86	130	109.0370
AAUAugugugugugugugugugugugugugugugugugugugca	chr8:106767082-106767371(+)$1	289	88	132	99.5925
GguguguguguguguguguguguguguguguguguguguguUUa	chr7:92254384-92254661(-)$1	277	87	131	105.7037
ugugugugugucugugugugugucugugugugugucugugugug	chr16:58195255-58195554(-)$1	299	65	109	100.0555
uguguguguguguguuugugugugugugugugugugagagagag	chr8:128923047-128923340(+)$1	293	76	120	92.1851
uguguguguguguguguguguguguguguguguguguguucgcg	chr11:3860669-3860956(-)$1	287	202	246	102.3703
agagagagaguguguguguguguguguguguguguguguguguC	chr11:3723336-3723626(-)$1	290	73	117	91.6296
gguguguguguguguguguguguguguguguguguguguaugca	chr19:38418222-38418544(+)$1	322	71	115	103.6666
GGCUugugucuguguguguguguguguguguguguguguAUUUU	chr4:103809120-103809385(+)$1	265	81	125	89.8703
cgagugugugugugugugugugugugugugugugucuguguguc	chr4:2351619-2351894(-)$1	275	98	142	100.4259
uguguguguguguguguguguguguguguauguAUAUAUAUGCU	chr11:58384454-58384709(+)$1	255	89	133	89.9629
UUACuguguguguguguguguguguguguguguguguguguguA	chr21:38830488-38830747(+)$1	259	78	122	101.5370
UGUGGGCGUAUAUUCgugugugugugugugugugugugugugAG	chr3:101305141-101305436(+)$1	295	233	277	84.5925
uguauguguauguguguguauguauauguguguguauguguguA	chr6:34616391-34616679(-)$1	288	92	136	87.1851
UAuguguguauguguguguguauguuugugugugugugugugcu	chr1:35456666-35456939(-)$1	273	96	140	92.7407
ugugugugugugugugugugugugugugugGGCGCGCGCAUGUU	chr7:157174352-157174668(+)$1	316	88	132	86.2592
uguguguguguguguguguguguguguguguguguguguguguu	chr2:148809095-148809365(+)$1	270	79	123	112.6481
ugugugugugugugugugugugugugugugugugugugugugaa	chr16:4679068-4679372(+)$1	304	83	127	110.0555
ugugugcgaguguguguguguguauguguauguguaugugugug	chr19:14111134-14111416(-)$1	282	98	142	92.3703
UGUUCguguguguguguguguguguguguguguUUUUUUUUGGU	chr2:8996288-8996574(-)$1	286	99	143	85.9814
UUGGGguguguguguguguguguguguguguguguguguguguU	chr17:35637476-35637774(-)$1	298	107	151	101.4444
CgugugugugugugugugugugugugugugugugugugGUUAUU	chr2:32757110-32757418(+)$1	308	90	134	97.0925
uuuguguguguguguguguguguguguguguguguguguuuuaa	chr20:30965875-30966151(+)$1	276	84	128	99.4999
ugugugugugugugugugugugugugugugugugugugugugua	chr1:10574141-10574394(+)$1	253	72	116	112.6481
uguguguguguguguguguguguguguguaaguacuugugugug	chr10:71098353-71098665(+)$1	312	84	128	91.1666
UGGAGGGgugugugugugugugugugugugugugugugugugcg	chr17:75482500-75482924(+)$1	424	62	106	94.6851
CAuguguguguguguguguguguguguguguguguguguauguA	chr2:198684522-198684792(+)$1	270	84	128	102.6481

#otherMatches

#Struct PSSM
:::::::::::::::::::::::::::::::::::::::::bb[	chr1:27853247-27853584(+)$1	337	272	316	109.4074
ccc333dddd]bb]ggggggg333bb]ccc666666hhhhhhhh	chr1:174243652-174243908(+)$1	256	84	128	89.4999
]cccggggggg::::::::::::::::::::::eeeee[bb[ee	chr1:175924758-175925026(-)$1	268	82	126	87.6481
=========dddd!!a[dddd+++++++++++a[bb[bb[ffff	chr6:20909305-20909580(+)$1	275	99	143	100.2407
ccc[a[a[ccc[bb[bb[ccc[eeeee$$$$$ccc####ddddm	chr16:88521455-88521735(+)$1	280	84	128	106.9074
c!!a[a[dddd!!eeeee[ggggggg[dddd(((((((((bb##	chr2:127434876-127435305(+)$1	429	219	263	88.0185
>>>>>>>>>>>>>>>ggggggg]bb]bb333bb4444bb22fff	chr1:59124495-59124760(-)$1	265	89	133	101.2592
$$$$$bb[ccc[a^^^^^^^^^^^^^^^^^^^^^^^^^^^a]cc	chr7:17900796-17901113(-)$1	317	108	152	105.5185
]a]bb]bb333eeeee]dddd]bb============oooooo==	chr10:38128266-38128556(-)$1	290	85	129	95.5185
eeeee[a[ccc[eeeee========================mmm	chr19:48188920-48189182(+)$1	262	78	122	113.1111
eeee]bb::::::::::::::::::=============oooooo	chr2:48131521-48131843(-)$1	322	80	124	109.4074
========:CCC{GGGGGGG:BB{DDDD{JJJJJJJJJJfffff	chr9:102954444-102954730(+)$1	286	85	129	94.7777
2bb22bb333ccc]a22bb22bb:::::::::::::A{IIIIII	chr14:76783572-76783842(+)$1	270	81	125	113.1111
ggggg[ccc[hhhhhhhh####=================mmmm=	chr7:50809799-50810123(-)$1	324	111	155	113.1111
IIIIIIIEEEEE{BB{BB{EEEEE{DDDD{DDDD:ffffff[cc	chr2:128253922-128254177(-)$1	255	12	56	92.6481
ggg]bbbb]dddd::::::::BB{CCCNNNNNEEEEEKKCCCii	chr4:20705016-20705284(+)$1	268	85	129	108.6666
:::ddddooooooddddCCC{CCC{CCCLLLDDDD{BB======	chr11:58366138-58366398(+)$1	260	77	121	100.6111
3ccc]ccc]bb============================mmmm=	chr19:47774860-47775198(+)$1	338	86	130	113.1111
dd22ccc]a]ddddccc[bb[ccc[eeeee!!bb[ccc####bb	chr12:122521976-122522256(+)$1	280	74	118	113.1111
bbdddd55555ccc]bb]eeeee]ccc22ccc]eeeee333ccc	chr9:128391159-128391453(-)$1	294	81	125	99.5925
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^a]dddd]ccc6	chr16:23478524-23478834(-)$1	310	79	123	113.1111
emmmmeeeee]bbBBKKBBCCC{CCC{HHHHHHHH{DDDD{DDD	chr5:145530351-145530629(-)$1	278	81	125	108.3888
dd]ccc]eeeeeHHHHHHHHLLLCCC{IIIIIIIIILLLGGGGG	chr5:134115715-134115984(+)$1	269	71	115	109.3148
:::::::::FFFFFF{BB:::::::::::::::BB{CCC{EEEE	chr19:941762-942017(+)$1	255	3	47	93.5740
ooooooggggggg]eeeee]a]a]ccc]ccc]bb]bb4444bb]	chr22:36406639-36406906(-)$1	267	81	125	113.1111
hhhhhhh333eeeee::::gggggggmmmmggggggg:::::::	chr6:45322188-45322490(-)$1	302	100	144	91.5370
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^a]a]iiiiiii	chr2:187934249-187934519(+)$1	270	75	119	113.1111
gggggffffff22dddd333ggggggg]bb333a]ggggggg55	chr6:15282067-15282354(+)$1	287	86	130	109.0370
ffeeeee]dddd]bb======================mmmm===	chr8:106767082-106767371(+)$1	289	88	132	99.5925
ggdddd[ffffff[abb[ccc!!a[dddd[abb[dddd[bb!!f	chr7:92254384-92254661(-)$1	277	87	131	105.7037
=====%%%%%%ccc"""a[ccc[ccc[hhhhhhhheeeee[bb!	chr16:58195255-58195554(-)$1	299	65	109	100.0555
cc]eeeee]ccc]ccc]ccc]bbCCCLLLAKKCCC{DDDD{CCC	chr8:128923047-128923340(+)$1	293	76	120	92.1851
:::::::::::::::::::::::::iiiiiiiiiooooooiiii	chr11:3860669-3860956(-)$1	287	202	246	102.3703
a[a[a[a[arrrrrrrrra]a]a]a]a]a]a]a]a]a]a]a]dd	chr11:3723336-3723626(-)$1	290	73	117	91.6296
ee]bb7777777hhhhhhhh:::::ccc[ccc[dddddddd[ff	chr19:38418222-38418544(+)$1	322	71	115	103.6666
!bb####ggggggg[bb[bb[bb[dddd[dddd"""ccc'''''	chr4:103809120-103809385(+)$1	265	81	125	89.8703
4eeeee]a22ccc]a333bb]bb::::::::hhhhhhhh"""ee	chr4:2351619-2351894(-)$1	275	98	142	100.4259
:bb!!a[bb####a[===========oooooo===========]	chr11:58384454-58384709(+)$1	255	89	133	89.9629
:eeeee[bb[eeeeeeeeee[=================mmmm==	chr21:38830488-38830747(+)$1	259	78	122	101.5370
ccc:EEEEE~~~~EEEEE}CCC}A}BB}DDDD}A}A}GGGGGGG	chr3:101305141-101305436(+)$1	295	233	277	84.5925
===========mmmm============]ccc:CCC}FFFFFF}E	chr6:34616391-34616679(-)$1	288	92	136	87.1851
ooodddd]dddd]bb]a22dddd]==========22ffffff22	chr1:35456666-35456939(-)$1	273	96	140	92.7407
cc]eeeee22ffffff:==========mmmm==========:::	chr7:157174352-157174668(+)$1	316	88	132	86.2592
fff]dddd::::::::::::::::::::::::::::::ccc!!h	chr2:148809095-148809365(+)$1	270	79	123	112.6481
]bb22a]eeeee]ccc]bb333a]a]dddd::::::::::::ee	chr16:4679068-4679372(+)$1	304	83	127	110.0555
:EEEEE{A{A{GGGGGGGKKDDDDeeeee"""==========oo	chr19:14111134-14111416(-)$1	282	98	142	92.3703
=]bb]bb::::eeeee!!ccc[dddd[ccc[ccc&&&&&&&ccc	chr2:8996288-8996574(-)$1	286	99	143	85.9814
MFFFFFF::::::::::::::::::::::::::::::::::::e	chr17:35637476-35637774(-)$1	298	107	151	101.4444
b::::::::::::bb[ccc####bb!!bb[ccc[ffffff[===	chr2:32757110-32757418(+)$1	308	90	134	97.0925
::::::::::::::::::::::::::::::::::::::::::::	chr20:30965875-30966151(+)$1	276	84	128	99.4999
fff[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:10574141-10574394(+)$1	253	72	116	112.6481
a]ccc]a]a]a]a]a22a]cccccc]a]bb::eeeee"""gggg	chr10:71098353-71098665(+)$1	312	84	128	91.1666
D{A{EEEEE{DDDD{A{BB================oooooo===	chr17:75482500-75482924(+)$1	424	62	106	94.6851
gggooooooggggggg333ccc]bb]a::::CCC{FFFFFFbb[	chr2:198684522-198684792(+)$1	270	84	128	102.6481

#DB
.........................................((.	chr1:27853247-27853584(+)$1	1	272	316	109.4074
)))...)))).)).)))))))...)).)))......))))))))	chr1:174243652-174243908(+)$1	1	84	128	89.4999
.))))))))))......................(((((.((.((	chr1:175924758-175925026(-)$1	1	82	126	87.6481
)))))))))((((..(.((((...........(.((.((.((((	chr6:20909305-20909580(+)$1	1	99	143	100.2407
(((.(.(.(((.((.((.(((.(((((.....(((....((((.	chr16:88521455-88521735(+)$1	1	84	128	106.9074
(..(.(.((((..(((((.(((((((.((((.........((..	chr2:127434876-127435305(+)$1	1	219	263	88.0185
...............))))))).)).))...))....))..)))	chr1:59124495-59124760(-)$1	1	89	133	101.2592
.....((.(((.(...........................).))	chr7:17900796-17901113(-)$1	1	108	152	105.5185
.).)).))...))))).)))).))((((((((((((......))	chr10:38128266-38128556(-)$1	1	85	129	95.5185
(((((.(.(((.(((((((((((((((((((((((((((((...	chr19:48188920-48189182(+)$1	1	78	122	113.1111
)))).))..................(((((((((((((......	chr2:48131521-48131843(-)$1	1	80	124	109.4074
)))))))).(((.(((((((.((.((((.(((((((((((((((	chr9:102954444-102954730(+)$1	1	85	129	94.7777
.))..))...))).)..))..)).............(.((((((	chr14:76783572-76783842(+)$1	1	81	125	113.1111
(((((.(((.((((((((....(((((((((((((((((....)	chr7:50809799-50810123(-)$1	1	111	155	113.1111
((((((((((((.((.((.(((((.((((.((((.((((((.((	chr2:128253922-128254177(-)$1	1	12	56	92.6481
))).)))).))))........((.(((.....(((((..(((((	chr4:20705016-20705284(+)$1	1	85	129	108.6666
...((((......))))(((.(((.(((...((((.((((((((	chr11:58366138-58366398(+)$1	1	77	121	100.6111
.))).))).))((((((((((((((((((((((((((((....)	chr19:47774860-47775198(+)$1	1	86	130	113.1111
))..))).).))))(((.((.(((.(((((..((.(((....((	chr12:122521976-122522256(+)$1	1	74	118	113.1111
)))))).....))).)).))))).)))..))).)))))...)))	chr9:128391159-128391453(-)$1	1	81	125	99.5925
.................................).)))).))).	chr16:23478524-23478834(-)$1	1	79	123	113.1111
(....))))).))((..(((((.(((.((((((((.((((.(((	chr5:145530351-145530629(-)$1	1	81	125	108.3888
)).))).)))))((((((((...(((.(((((((((...(((((	chr5:134115715-134115984(+)$1	1	71	115	109.3148
.........((((((.((...............((.(((.((((	chr19:941762-942017(+)$1	1	3	47	93.5740
......))))))).))))).).).))).))).)).))....)).	chr22:36406639-36406906(-)$1	1	81	125	113.1111
)))))))...)))))....(((((((....))))))).......	chr6:45322188-45322490(-)$1	1	100	144	91.5370
.................................).).)))))))	chr2:187934249-187934519(+)$1	1	75	119	113.1111
)))))))))))..))))...))))))).))...).)))))))..	chr6:15282067-15282354(+)$1	1	86	130	109.0370
))))))).)))).))((((((((((((((((((((((....)))	chr8:106767082-106767371(+)$1	1	88	132	99.5925
))((((.((((((.(((.(((..(.((((.(((.((((.((..(	chr7:92254384-92254661(-)$1	1	87	131	105.7037
(((((......(((...(.(((.(((.(((((((((((((.((.	chr16:58195255-58195554(-)$1	1	65	109	100.0555
)).))))).))).))).))).))(((...(..(((.((((.(((	chr8:128923047-128923340(+)$1	1	76	120	92.1851
.........................(((((((((......))))	chr11:3860669-3860956(-)$1	1	202	246	102.3703
(.(.(.(.(.........).).).).).).).).).).).).))	chr11:3723336-3723626(-)$1	1	73	117	91.6296
)).)).......)))))))).....(((.(((.((((((((.((	chr19:38418222-38418544(+)$1	1	71	115	103.6666
.((....(((((((.((.((.((.((((.((((...(((.....	chr4:103809120-103809385(+)$1	1	81	125	89.8703
.))))).)..))).)...)).))........((((((((...((	chr4:2351619-2351894(-)$1	1	98	142	100.4259
.((..(.((....(.(((((((((((......))))))))))).	chr11:58384454-58384709(+)$1	1	89	133	89.9629
.(((((.((.((((((((((.(((((((((((((((((....))	chr21:38830488-38830747(+)$1	1	78	122	101.5370
))).)))))....))))).))).).)).)))).).).)))))))	chr3:101305141-101305436(+)$1	1	233	277	84.5925
(((((((((((....)))))))))))).))).))).)))))).)	chr6:34616391-34616679(-)$1	1	92	136	87.1851
...)))).)))).)).)..)))).))))))))))..))))))..	chr1:35456666-35456939(-)$1	1	96	140	92.7407
)).)))))..)))))).((((((((((....))))))))))...	chr7:157174352-157174668(+)$1	1	88	132	86.2592
))).))))..............................(((..(	chr2:148809095-148809365(+)$1	1	79	123	112.6481
.))..).))))).))).))...).).))))............((	chr16:4679068-4679372(+)$1	1	83	127	110.0555
.(((((.(.(.(((((((..(((((((((...((((((((((..	chr19:14111134-14111416(-)$1	1	98	142	92.3703
).)).))....(((((..(((.((((.(((.(((.......(((	chr2:8996288-8996574(-)$1	1	99	143	85.9814
.((((((....................................(	chr17:35637476-35637774(-)$1	1	107	151	101.4444
)............((.(((....((..((.(((.((((((.(((	chr2:32757110-32757418(+)$1	1	90	134	97.0925
............................................	chr20:30965875-30966151(+)$1	1	84	128	99.4999
(((.(((.....................................	chr1:10574141-10574394(+)$1	1	72	116	112.6481
).))).).).).).)..).)))))).).))..(((((...((((	chr10:71098353-71098665(+)$1	1	84	128	91.1666
(.(.(((((.((((.(.((((((((((((((((((......)))	chr17:75482500-75482924(+)$1	1	62	106	94.6851
(((......)))))))...))).)).)....(((.((((((((.	chr2:198684522-198684792(+)$1	1	84	128	102.6481

#PSSM
u : 0.55	U : 0.18	g : 0.07	G : 0.05	A : 0.03	a : 0.03	C : 0.03	c : 0.01	
g : 0.66	G : 0.09	U : 0.07	A : 0.07	u : 0.03	c : 0.03	a : 0.01	
u : 0.77	a : 0.07	U : 0.07	G : 0.03	C : 0.01	A : 0.01	
g : 0.77	a : 0.05	G : 0.05	A : 0.03	U : 0.03	u : 0.01	C : 0.01	
u : 0.85	G : 0.05	a : 0.03	C : 0.03	g : 0.01	
g : 0.90	c : 0.03	G : 0.03	A : 0.01	
u : 0.85	c : 0.05	C : 0.03	g : 0.01	a : 0.01	G : 0.01	
g : 0.92	a : 0.03	C : 0.01	G : 0.01	
u : 0.94	a : 0.03	U : 0.01	
g : 0.92	a : 0.03	c : 0.01	A : 0.01	
u : 0.98	U : 0.01	
g : 0.94	a : 0.01	c : 0.01	A : 0.01	
u : 0.94	a : 0.01	g : 0.01	U : 0.01	
g : 0.96	c : 0.01	U : 0.01	
u : 0.96	c : 0.01	C : 0.01	
g : 0.94	c : 0.01	a : 0.01	u : 0.01	
u : 0.99	
g : 0.99	
u : 0.99	
g : 0.98	a : 0.01	
u : 0.99	
g : 0.98	a : 0.01	
u : 0.99	
g : 0.90	a : 0.07	c : 0.01	
u : 0.99	
g : 0.96	a : 0.01	u : 0.01	
u : 0.99	
g : 0.99	
u : 0.98	a : 0.01	
g : 0.94	a : 0.05	
u : 0.94	c : 0.01	G : 0.01	a : 0.01	
g : 0.98	G : 0.01	
u : 0.98	C : 0.01	
g : 0.90	u : 0.01	A : 0.01	G : 0.01	U : 0.01	a : 0.01	
u : 0.90	c : 0.03	U : 0.03	C : 0.01	
g : 0.81	a : 0.07	c : 0.03	A : 0.01	G : 0.01	U : 0.01	u : 0.01	
u : 0.92	U : 0.03	a : 0.01	C : 0.01	
g : 0.87	a : 0.03	u : 0.03	A : 0.01	G : 0.01	U : 0.01	
u : 0.88	a : 0.03	U : 0.03	C : 0.01	G : 0.01	
g : 0.77	a : 0.07	u : 0.05	A : 0.05	U : 0.03	
u : 0.85	U : 0.09	A : 0.01	a : 0.01	c : 0.01	
g : 0.79	G : 0.07	u : 0.05	A : 0.03	U : 0.03	
u : 0.57	a : 0.09	c : 0.09	g : 0.07	U : 0.07	G : 0.03	A : 0.03	C : 0.01	
g : 0.35	a : 0.16	u : 0.14	U : 0.12	A : 0.11	C : 0.05	c : 0.01	G : 0.01	

#score	5434.4814814814745
#seq	54
#width	44
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_CDS_m2_run2.nuc.txt

#NT
UGUAUAUAUCC	chr11:5364508-5364751(-)$1	243	91	102	17.3518
UGUAUAAAUUA	chr14:64926549-64926796(+)$1	247	97	108	16.8888
UGUAAAUAUGC	chr16:48395902-48396162(-)$1	260	114	125	17.1666
UGUAAAUAAUA	chr3:139071450-139071737(+)$1	287	130	141	18.9259
UGUAUAUAUUA	chr3:184631216-184631450(+)$1	234	121	132	21.5185
UGUAAAUAUAA	chr12:12273928-12274171(-)$1	243	151	162	18.5555
UGUAUAUAAUC	chr2:38525305-38525593(-)$1	288	129	140	18.0925
UGUAAAUAUUG	chr8:124267804-124268107(-)$1	303	134	145	19.6666
GGUAUAUAGUA	chrX:53563472-53563727(-)$1	255	98	109	15.2222
UGUAAAUAGAG	chr16:56717803-56718051(+)$1	248	182	193	15.7777
UAUAUAUACUA	chr17:78109782-78110031(-)$1	249	64	75	15.2222
UGUAAAUACUA	chr13:31232078-31232332(+)$1	254	154	165	19.1111
UGGAAAUAUUG	chr9:127911945-127912219(-)$1	274	144	155	14.8518
UGUAUAUAUCA	chr2:70105998-70106266(+)$1	268	109	120	18.7407
UGUAUAUAAAA	chr8:95801997-95802247(+)$1	250	101	112	17.0740
UGUACAUAUUA	chr16:19518911-19519196(-)$1	285	208	219	19.1111
UGUAUUUAUUG	chr11:65305927-65306188(+)$1	261	156	167	15.5925
UGUAUAUAAUA	chr17:15133936-15134188(-)$1	252	112	123	19.4814
UAUAUAUACUA	chr17:78109741-78109982(-)$1	241	15	26	15.2222
UGUGUAUAGUC	chr15:66180061-66180347(+)$1	286	143	154	14.8518
UGUAUAUAUUA	chr1:231509647-231509908(-)$1	261	147	158	21.5185
UUUAUAUAUUA	chr5:170818609-170818837(+)$1	228	204	215	17.0740
UGUAUAUACAC	chr11:28057911-28058174(-)$1	263	123	134	15.8703
UGUAAAUAUUU	chr15:63421622-63421874(+)$1	252	129	140	20.1296
UGUAUAUAUUU	chr1:36181055-36181344(-)$1	289	143	154	20.6851
UGUAUAUUUUU	chr7:155094357-155094601(+)$1	244	142	153	16.2407
UUUAAAUAGUU	chr8:103842001-103842265(-)$1	264	6	17	14.2037
UGUAUAUGUAU	chr5:41911080-41911342(+)$1	262	130	141	13.8333
UGUAAAUAGUU	chr11:68216433-68216707(+)$1	274	139	150	18.6481
UGUAUAUACAG	chr2:109392097-109392394(+)$1	297	128	139	15.9629
UGUAAAUAGUG	chr20:54961374-54961641(-)$1	267	123	134	18.1851
ugugaauauuu	chr4:140624500-140624780(+)$1	280	19	30	16.3333
UGUACAUAGGA	chr16:1818717-1819009(+)$1	292	133	144	15.2222
UGUAAUUAUUC	chr1:167889118-167889400(-)$1	282	97	108	14.9444
UGUAGAUGUUA	chr3:40499355-40499582(+)$1	227	102	113	14.6666
UGUUAAUAUUA	chr14:75520028-75520293(-)$1	265	221	232	16.7037
UGUAAAUAAAA	chr8:48701438-48701711(-)$1	273	142	153	16.5185
UGUAGAUAUCA	chr2:26357728-26357980(+)$1	252	107	118	16.3333
UGUAAAUAUGU	chr1:242015491-242015775(+)$1	284	126	137	17.7222
UGUGUAUUUUU	chr4:120221390-120221630(-)$1	240	122	133	12.4444
UGUAAAUAUGU	chr5:131607795-131608074(+)$1	279	176	187	17.7222
UGUAUAUAGAU	chr17:73231650-73231935(+)$1	285	157	168	16.7962
UGUGUAUAGUG	chr4:71888153-71888378(+)$1	225	109	120	14.9444
UGUGUAUACUC	chr11:64003191-64003458(+)$1	267	109	120	14.4814
UGUAUAUAGGA	chr20:20013149-20013394(+)$1	245	83	94	17.6296
UGUAUAUAGCU	chr20:34292248-34292513(-)$1	265	130	141	16.4259
UGUAAAAAGUU	chr9:32553697-32553998(-)$1	301	131	142	14.0185
UGUAAAUAUUG	chr15:78453913-78454199(+)$1	286	136	147	19.6666
UGUGUAUAUGU	chr15:67818770-67819061(+)$1	291	153	164	14.4814
UGUAAAUAAUA	chr9:37819240-37819506(+)$1	266	143	154	18.9259
UGUAAAUACGA	chr1:3542230-3542485(+)$1	255	110	121	16.7037
UGUAUAUAUGC	chr1:231471169-231471446(-)$1	277	153	164	17.7222
UGUAUAUAUUA	chr3:32754618-32754923(+)$1	305	142	153	21.5185

#otherMatches

#Struct PSSM
::::::fffff	chr3:179051453-179051708(+)$1	255	82	93	17.8148
GG:::::::dd	chr11:5364508-5364751(-)$1	243	91	102	17.3518
gggggxxxxxx	chr14:64926549-64926796(+)$1	247	97	108	16.8888
}DDDD:::ccc	chr16:48395902-48396162(-)$1	260	114	125	17.1666
===::::::::	chr3:139071450-139071737(+)$1	287	130	141	18.9259
eee::::::ii	chr3:184631216-184631450(+)$1	234	121	132	21.5185
ddd::::::::	chr12:12273928-12274171(-)$1	243	151	162	18.5555
dddd::::::a	chr2:38525305-38525593(-)$1	288	129	140	18.0925
[hhhhhhhh''	chr8:124267804-124268107(-)$1	303	134	145	19.6666
ee55555dddd	chrX:53563472-53563727(-)$1	255	98	109	15.2222
eee::ddddoo	chr16:56717803-56718051(+)$1	248	182	193	15.7777
ggggrrrrrrr	chr17:78109782-78110031(-)$1	249	64	75	15.2222
ddd00000000	chr13:31232078-31232332(+)$1	254	154	165	19.1111
:HHHHHHHH{B	chr9:127911945-127912219(-)$1	274	144	155	14.8518
HHHH///////	chr2:70105998-70106266(+)$1	268	109	120	18.7407
fff[ccc####	chr8:95801997-95802247(+)$1	250	101	112	17.0740
GGGGGGG}BB~	chr16:19518911-19519196(-)$1	285	208	219	19.1111
eeeeennnnne	chr11:65305927-65306188(+)$1	261	156	167	15.5925
fffnnnnnfff	chr17:15133936-15134188(-)$1	252	112	123	19.4814
ggggrrrrrrr	chr17:78109741-78109982(-)$1	241	15	26	15.2222
eemmmmeeeee	chr15:66180061-66180347(+)$1	286	143	154	14.8518
2ggggggg:::	chr1:231509647-231509908(-)$1	261	147	158	21.5185
oooooccc]dd	chr5:170818609-170818837(+)$1	228	204	215	17.0740
hhhhhhh::::	chr11:28057911-28058174(-)$1	263	123	134	15.8703
ff]========	chr15:63421622-63421874(+)$1	252	129	140	20.1296
mmmdddd]fff	chr1:36181055-36181344(-)$1	289	143	154	20.6851
ddttttttttt	chr7:155094357-155094601(+)$1	244	142	153	16.2407
:::::::FFFF	chr8:103842001-103842265(-)$1	264	6	17	14.2037
dd)))))))))	chr5:41911080-41911342(+)$1	262	130	141	13.8333
&&ddddmmmmd	chr11:68216433-68216707(+)$1	274	139	150	18.6481
ddd::::hhhh	chr2:109392097-109392394(+)$1	297	128	139	15.9629
nbb22bb22dd	chr20:54961374-54961641(-)$1	267	123	134	18.1851
DDD{GGGGGGG	chr4:140624500-140624780(+)$1	280	19	30	16.3333
DDD::::::::	chr16:1818717-1819009(+)$1	292	133	144	15.2222
eee::::gggg	chr1:167889118-167889400(-)$1	282	97	108	14.9444
dd[ddddgggg	chr3:40499355-40499582(+)$1	227	102	113	14.6666
fffffmmmmff	chr14:75520028-75520293(-)$1	265	221	232	16.7037
eeee[ccc%%%	chr8:48701438-48701711(-)$1	273	142	153	16.5185
:::::::::ff	chr2:26357728-26357980(+)$1	252	107	118	16.3333
!ddddnnnnnd	chr1:242015491-242015775(+)$1	284	126	137	17.7222
!bb####iiii	chr4:120221390-120221630(-)$1	240	122	133	12.4444
ddttttttttt	chr5:131607795-131608074(+)$1	279	176	187	17.7222
hhh[ccc"""d	chr17:73231650-73231935(+)$1	285	157	168	16.7962
CC////////J	chr4:71888153-71888378(+)$1	225	109	120	14.9444
ddddooooood	chr11:64003191-64003458(+)$1	267	109	120	14.4814
ggggggg22cc	chr20:20013149-20013394(+)$1	245	83	94	17.6296
@GGGGGGGCCC	chr20:34292248-34292513(-)$1	265	130	141	16.4259
ddd::::::::	chr9:32553697-32553998(-)$1	301	131	142	14.0185
eeeee333eee	chr15:78453913-78454199(+)$1	286	136	147	19.6666
ccccc]eeeee	chr15:67818770-67819061(+)$1	291	153	164	14.4814
dd:::gggggg	chr9:37819240-37819506(+)$1	266	143	154	18.9259
eee::::::dd	chr1:3542230-3542485(+)$1	255	110	121	16.7037
mmmeeeee]ee	chr1:231471169-231471446(-)$1	277	153	164	17.7222
yyyyyyyyyyy	chr3:32754618-32754923(+)$1	305	142	153	21.5185

#DB
......(((((	chr3:179051453-179051708(+)$1	1	82	93	17.8148
((.......((	chr11:5364508-5364751(-)$1	1	91	102	17.3518
(((((......	chr14:64926549-64926796(+)$1	1	97	108	16.8888
.))))...(((	chr16:48395902-48396162(-)$1	1	114	125	17.1666
)))........	chr3:139071450-139071737(+)$1	1	130	141	18.9259
)))......((	chr3:184631216-184631450(+)$1	1	121	132	21.5185
)))........	chr12:12273928-12274171(-)$1	1	151	162	18.5555
))))......(	chr2:38525305-38525593(-)$1	1	129	140	18.0925
.((((((((..	chr8:124267804-124268107(-)$1	1	134	145	19.6666
)).....))))	chrX:53563472-53563727(-)$1	1	98	109	15.2222
)))..((((..	chr16:56717803-56718051(+)$1	1	182	193	15.7777
((((.......	chr17:78109782-78110031(-)$1	1	64	75	15.2222
)))........	chr13:31232078-31232332(+)$1	1	154	165	19.1111
.((((((((.(	chr9:127911945-127912219(-)$1	1	144	155	14.8518
)))).......	chr2:70105998-70106266(+)$1	1	109	120	18.7407
(((.(((....	chr8:95801997-95802247(+)$1	1	101	112	17.0740
))))))).)).	chr16:19518911-19519196(-)$1	1	208	219	19.1111
(((((.....)	chr11:65305927-65306188(+)$1	1	156	167	15.5925
(((.....)))	chr17:15133936-15134188(-)$1	1	112	123	19.4814
((((.......	chr17:78109741-78109982(-)$1	1	15	26	15.2222
((....)))))	chr15:66180061-66180347(+)$1	1	143	154	14.8518
.)))))))...	chr1:231509647-231509908(-)$1	1	147	158	21.5185
.....))).))	chr5:170818609-170818837(+)$1	1	204	215	17.0740
)))))))....	chr11:28057911-28058174(-)$1	1	123	134	15.8703
)).))))))))	chr15:63421622-63421874(+)$1	1	129	140	20.1296
...)))).)))	chr1:36181055-36181344(-)$1	1	143	154	20.6851
((.........	chr7:155094357-155094601(+)$1	1	142	153	16.2407
.......((((	chr8:103842001-103842265(-)$1	1	6	17	14.2037
((.........	chr5:41911080-41911342(+)$1	1	130	141	13.8333
..((((....)	chr11:68216433-68216707(+)$1	1	139	150	18.6481
)))....((((	chr2:109392097-109392394(+)$1	1	128	139	15.9629
.))..))..))	chr20:54961374-54961641(-)$1	1	123	134	18.1851
(((.(((((((	chr4:140624500-140624780(+)$1	1	19	30	16.3333
)))........	chr16:1818717-1819009(+)$1	1	133	144	15.2222
)))....((((	chr1:167889118-167889400(-)$1	1	97	108	14.9444
((.((((((((	chr3:40499355-40499582(+)$1	1	102	113	14.6666
(((((....))	chr14:75520028-75520293(-)$1	1	221	232	16.7037
((((.(((...	chr8:48701438-48701711(-)$1	1	142	153	16.5185
.........((	chr2:26357728-26357980(+)$1	1	107	118	16.3333
.((((.....)	chr1:242015491-242015775(+)$1	1	126	137	17.7222
.((....((((	chr4:120221390-120221630(-)$1	1	122	133	12.4444
((.........	chr5:131607795-131608074(+)$1	1	176	187	17.7222
(((.(((...(	chr17:73231650-73231935(+)$1	1	157	168	16.7962
))........)	chr4:71888153-71888378(+)$1	1	109	120	14.9444
((((......)	chr11:64003191-64003458(+)$1	1	109	120	14.4814
)))))))..))	chr20:20013149-20013394(+)$1	1	83	94	17.6296
.))))))))))	chr20:34292248-34292513(-)$1	1	130	141	16.4259
)))........	chr9:32553697-32553998(-)$1	1	131	142	14.0185
)))))...)))	chr15:78453913-78454199(+)$1	1	136	147	19.6666
))))).)))))	chr15:67818770-67819061(+)$1	1	153	164	14.4814
))...((((((	chr9:37819240-37819506(+)$1	1	143	154	18.9259
)))......((	chr1:3542230-3542485(+)$1	1	110	121	16.7037
...))))).))	chr1:231471169-231471446(-)$1	1	153	164	17.7222
...........	chr3:32754618-32754923(+)$1	1	142	153	21.5185

#PSSM
U : 0.96	G : 0.01	u : 0.01	
G : 0.90	A : 0.03	U : 0.03	g : 0.01	
U : 0.96	G : 0.01	u : 0.01	
A : 0.87	G : 0.09	g : 0.01	U : 0.01	
U : 0.51	A : 0.38	C : 0.03	G : 0.03	a : 0.01	
A : 0.94	U : 0.03	a : 0.01	
U : 0.94	A : 0.03	u : 0.01	
A : 0.90	U : 0.03	G : 0.03	a : 0.01	
U : 0.49	G : 0.22	C : 0.14	A : 0.11	u : 0.01	
U : 0.61	G : 0.14	A : 0.14	C : 0.07	u : 0.01	
A : 0.42	U : 0.24	G : 0.16	C : 0.14	u : 0.01	

#score	920.5185185185173
#seq	54
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_CDS_m2_run2.nuc.txt

#NT
UAGAAGAAGAAG	chr5:98215167-98215450(-)$1	283	121	133	21.3448
AAGAGGCAGAAG	chr12:123003306-123003544(-)$1	238	120	132	18.0689
AAGAAGGAAAAG	chr1:214787069-214787367(+)$1	298	118	130	17.3793
aagaggaagaga	chr9:100777555-100777772(+)$1	217	116	128	20.1379
cagaagaagaag	chr11:61914101-61914319(+)$1	218	61	73	21.5172
AUGAAGAGGAGG	chr1:16258455-16258701(+)$1	246	161	173	17.8965
AGGAACAAGAGG	chr19:11170642-11170905(+)$1	263	207	219	17.7241
AAGAAGUAGAGA	chr17:48823853-48824079(+)$1	226	46	58	18.9310
AACAAGAAGAGG	chr14:39649704-39649931(+)$1	227	125	137	22.2931
AAGAAGAAGAAG	chr16:2808887-2809148(+)$1	261	144	156	25.7413
AAGAAGAAAAGA	chr10:103558854-103559142(-)$1	288	95	107	19.4482
aagaagaagaag	chr7:128434350-128434663(+)$1	313	117	129	25.7413
AAGAGGAAGAGC	chr2:233681484-233681820(+)$1	336	139	151	19.1034
AGCAAGAAGAGG	chr1:117617649-117617938(+)$1	289	140	152	18.4137
aagaagaagagg	chr17:4575370-4575602(-)$1	232	150	162	25.9137
AGGAAGAAGGAG	chr15:40488676-40488938(+)$1	262	128	140	17.3793
AACUAGAAGAGG	chr3:37365252-37365502(+)$1	250	229	241	18.0689
AAGAUGAAGAUA	chr17:77808436-77808743(-)$1	307	47	59	17.9827
AAAAAGAAGAGG	chr10:120809989-120810236(-)$1	247	156	168	22.2931
AACAAGAAGAGG	chr1:205689651-205689882(-)$1	231	218	230	22.2931
AAGCUGAAGAGG	chrX:64956939-64957170(+)$1	231	193	205	18.4137
AUGAAGAGGAGG	chr19:49377315-49377558(+)$1	243	97	109	17.8965
aaaaagaaaaag	chr2:99980633-99980877(+)$1	244	137	149	18.1551
aagaagaaaaga	chr7:91630089-91630430(+)$1	341	160	172	19.4482
AAGAAGAAGGAA	chr9:127998782-127999037(-)$1	255	56	68	18.7586
AAGCAAAAGAAG	chr17:2570185-2570474(+)$1	289	128	140	17.6379
AAGAAAAAGAAG	chr2:99977905-99978211(+)$1	306	219	231	21.7758
AAAAUGAAGAGG	chr10:43292294-43292581(+)$1	287	220	232	18.9310
aagaggaagaga	chr9:100777589-100777796(+)$1	207	82	94	20.1379
GAGAAGAAGAAU	chr2:96953121-96953388(-)$1	267	157	169	17.9827
AAGAAGAAGGGA	chr3:47163082-47163363(-)$1	281	125	137	18.9310
aagaugaagaag	chr2:180830504-180830796(-)$1	292	180	192	22.3793
AUGAAGAAGAUG	chr8:124383376-124383650(-)$1	274	106	118	20.3103
CAGAAGAAGAGG	chr19:11113920-11114173(+)$1	253	136	148	21.6896
AAGAAGGAGAGA	chr15:91524957-91525269(-)$1	312	59	71	19.0172
AAGAGGAAGAGG	chr19:55649305-55649543(-)$1	238	120	132	22.6379
AAGAAGAGAAGG	chr17:38317903-38318154(+)$1	251	187	199	17.4655
AAGAAGCAGAGA	chr3:37363147-37363401(+)$1	254	207	219	19.0172
aacaaaaagaag	chr13:107196361-107196609(-)$1	248	183	195	18.1551
AAGGAGAAGAGG	chr19:10670185-10670485(-)$1	300	158	170	21.6896
AAAAUGAAGAGG	chr10:43292381-43292626(+)$1	245	133	145	18.9310
aagaagaagaaA	chr12:104341084-104341308(+)$1	224	104	116	23.2413
aagaagaagaag	chr14:102551080-102551302(-)$1	222	123	135	25.7413
aagaagaagaaa	chr6:44217991-44218199(+)$1	208	180	192	23.2413
AAGCAGAAAAAG	chr19:15510025-15510286(-)$1	261	136	148	17.6379
AUGAAGAAGAAG	chr6:149826607-149826922(-)$1	315	113	125	22.2068
AAUAGGAAGAAG	chr12:80190968-80191267(-)$1	299	130	142	18.5000
AAAAAUAAGAAG	chr1:111490496-111490751(-)$1	255	89	101	17.8103
aaggagaagaug	chr9:100773454-100773665(+)$1	211	98	110	19.6206
AAGAGGAAGAGG	chr14:73577601-73577875(+)$1	274	49	61	22.6379
AAGAAAAAGAAA	chr6:7606188-7606504(+)$1	316	183	195	19.2758
AAGAAGAAGAUG	chr2:95773898-95774205(-)$1	307	192	204	23.8448
AUGAAAAAGAAG	chr1:205689527-205689798(-)$1	271	29	41	18.2413
AUGUAGAAGAAG	chr18:252436-252684(-)$1	248	100	112	17.9827
CUGAAGAAGAAG	chr2:232325463-232325673(-)$1	210	99	111	17.9827
AAGAUGAAGAAG	chr2:232327812-232328047(-)$1	235	105	117	22.3793
gagaagaagagg	chr1:226349223-226349493(-)$1	270	180	192	21.6034

#otherMatches

#Struct PSSM
LLGGGGGGG{DD	chr11:17332348-17332658(+)$1	310	141	153	22.4655
^^^^^^^^^^^^	chr5:98215167-98215450(-)$1	283	121	133	21.3448
c[eeeee!!a[c	chr12:123003306-123003544(-)$1	238	120	132	18.0689
gggg:::::::e	chr1:214787069-214787367(+)$1	298	118	130	17.3793
::::::::::::	chr9:100777555-100777772(+)$1	217	116	128	20.1379
h:::::::::::	chr11:61914101-61914319(+)$1	218	61	73	21.5172
yyyyyyybb]a6	chr1:16258455-16258701(+)$1	246	161	173	17.8965
qqqqbb::::::	chr19:11170642-11170905(+)$1	263	207	219	17.7241
gggg]dddd:ff	chr17:48823853-48824079(+)$1	226	46	58	18.9310
::::::::::dd	chr14:39649704-39649931(+)$1	227	125	137	22.2931
:===========	chr16:2808887-2809148(+)$1	261	144	156	25.7413
::::::::::::	chr10:103558854-103559142(-)$1	288	95	107	19.4482
++++++++++++	chr7:128434350-128434663(+)$1	313	117	129	25.7413
qqqqqa4444bb	chr2:233681484-233681820(+)$1	336	139	151	19.1034
3bb]ccc:eeee	chr1:117617649-117617938(+)$1	289	140	152	18.4137
::::::::::::	chr17:4575370-4575602(-)$1	232	150	162	25.9137
ddddccc[bbmm	chr15:40488676-40488938(+)$1	262	128	140	17.3793
qqqqqbb]a]bb	chr3:37365252-37365502(+)$1	250	229	241	18.0689
::cccppppppp	chr17:77808436-77808743(-)$1	307	47	59	17.9827
::::::::::::	chr10:120809989-120810236(-)$1	247	156	168	22.2931
>>>>eeeee22a	chr1:205689651-205689882(-)$1	231	218	230	22.2931
}BB}FFFFFFCC	chrX:64956939-64957170(+)$1	231	193	205	18.4137
cc333ccc22cc	chr19:49377315-49377558(+)$1	243	97	109	17.8965
D:::::::::::	chr2:99980633-99980877(+)$1	244	137	149	18.1551
::::::::dddd	chr7:91630089-91630430(+)$1	341	160	172	19.4482
qqdddd:::ddd	chr9:127998782-127999037(-)$1	255	56	68	18.7586
c333ggggggg]	chr17:2570185-2570474(+)$1	289	128	140	17.6379
\\\\\\\HHHHH	chr2:99977905-99978211(+)$1	306	219	231	21.7758
::::::::ffff	chr10:43292294-43292581(+)$1	287	220	232	18.9310
:::::::ccc[b	chr9:100777589-100777796(+)$1	207	82	94	20.1379
F{BBCCC:::::	chr2:96953121-96953388(-)$1	267	157	169	17.9827
>>>>>>>>>ccc	chr3:47163082-47163363(-)$1	281	125	137	18.9310
JJYYBBCCCZZZ	chr2:180830504-180830796(-)$1	292	180	192	22.3793
cccbbffffff2	chr8:124383376-124383650(-)$1	274	106	118	20.3103
cc55555hhhhh	chr19:11113920-11114173(+)$1	253	136	148	21.6896
nnccc]dddddd	chr15:91524957-91525269(-)$1	312	59	71	19.0172
66dddd]bb]dd	chr19:55649305-55649543(-)$1	238	120	132	22.6379
ppeeeeeCCC}B	chr17:38317903-38318154(+)$1	251	187	199	17.4655
H~~~~FFFFFFg	chr3:37363147-37363401(+)$1	254	207	219	19.0172
}FFFFFFeeeee	chr13:107196361-107196609(-)$1	248	183	195	18.1551
44dddd::::CC	chr19:10670185-10670485(-)$1	300	158	170	21.6896
::::ccc[ffff	chr10:43292381-43292626(+)$1	245	133	145	18.9310
ffff[accc!!c	chr12:104341084-104341308(+)$1	224	104	116	23.2413
^^^^^^^^^^^^	chr14:102551080-102551302(-)$1	222	123	135	25.7413
::::::::::::	chr6:44217991-44218199(+)$1	208	180	192	23.2413
::EEEEE::::d	chr19:15510025-15510286(-)$1	261	136	148	17.6379
++++++++++++	chr6:149826607-149826922(-)$1	315	113	125	22.2068
++++bb[ddddm	chr12:80190968-80191267(-)$1	299	130	142	18.5000
c:::dddd"""f	chr1:111490496-111490751(-)$1	255	89	101	17.8103
""a^^^^^^^^^	chr9:100773454-100773665(+)$1	211	98	110	19.6206
[ffffffcccee	chr14:73577601-73577875(+)$1	274	49	61	22.6379
::::::::::::	chr6:7606188-7606504(+)$1	316	183	195	19.2758
~BB|||||||HH	chr2:95773898-95774205(-)$1	307	192	204	23.8448
ddddrrrrrrrr	chr1:205689527-205689798(-)$1	271	29	41	18.2413
2eeeee::::::	chr18:252436-252684(-)$1	248	100	112	17.9827
ccnnnnnccc22	chr2:232325463-232325673(-)$1	210	99	111	17.9827
FFFFFF//////	chr2:232327812-232328047(-)$1	235	105	117	22.3793
fffff]bb::::	chr1:226349223-226349493(-)$1	270	180	192	21.6034

#DB
..(((((((.((	chr11:17332348-17332658(+)$1	1	141	153	22.4655
............	chr5:98215167-98215450(-)$1	1	121	133	21.3448
(.(((((..(.(	chr12:123003306-123003544(-)$1	1	120	132	18.0689
)))).......(	chr1:214787069-214787367(+)$1	1	118	130	17.3793
............	chr9:100777555-100777772(+)$1	1	116	128	20.1379
)...........	chr11:61914101-61914319(+)$1	1	61	73	21.5172
.......)).).	chr1:16258455-16258701(+)$1	1	161	173	17.8965
....))......	chr19:11170642-11170905(+)$1	1	207	219	17.7241
)))).)))).((	chr17:48823853-48824079(+)$1	1	46	58	18.9310
..........((	chr14:39649704-39649931(+)$1	1	125	137	22.2931
.(((((((((((	chr16:2808887-2809148(+)$1	1	144	156	25.7413
............	chr10:103558854-103559142(-)$1	1	95	107	19.4482
............	chr7:128434350-128434663(+)$1	1	117	129	25.7413
.....)....))	chr2:233681484-233681820(+)$1	1	139	151	19.1034
.)).))).((((	chr1:117617649-117617938(+)$1	1	140	152	18.4137
............	chr17:4575370-4575602(-)$1	1	150	162	25.9137
))))(((.((..	chr15:40488676-40488938(+)$1	1	128	140	17.3793
.....)).).))	chr3:37365252-37365502(+)$1	1	229	241	18.0689
..(((.......	chr17:77808436-77808743(-)$1	1	47	59	17.9827
............	chr10:120809989-120810236(-)$1	1	156	168	22.2931
....)))))..)	chr1:205689651-205689882(-)$1	1	218	230	22.2931
.)).))))))))	chrX:64956939-64957170(+)$1	1	193	205	18.4137
))...)))..))	chr19:49377315-49377558(+)$1	1	97	109	17.8965
(...........	chr2:99980633-99980877(+)$1	1	137	149	18.1551
........((((	chr7:91630089-91630430(+)$1	1	160	172	19.4482
..))))...(((	chr9:127998782-127999037(-)$1	1	56	68	18.7586
)...))))))).	chr17:2570185-2570474(+)$1	1	128	140	17.6379
.......)))))	chr2:99977905-99978211(+)$1	1	219	231	21.7758
........((((	chr10:43292294-43292581(+)$1	1	220	232	18.9310
.......(((.(	chr9:100777589-100777796(+)$1	1	82	94	20.1379
(.(((((.....	chr2:96953121-96953388(-)$1	1	157	169	17.9827
.........)))	chr3:47163082-47163363(-)$1	1	125	137	18.9310
))..)))))...	chr2:180830504-180830796(-)$1	1	180	192	22.3793
))))))))))).	chr8:124383376-124383650(-)$1	1	106	118	20.3103
)).....)))))	chr19:11113920-11114173(+)$1	1	136	148	21.6896
..))).))))))	chr15:91524957-91525269(-)$1	1	59	71	19.0172
..)))).)).))	chr19:55649305-55649543(-)$1	1	120	132	22.6379
..)))))))).)	chr17:38317903-38318154(+)$1	1	187	199	17.4655
)....))))))(	chr3:37363147-37363401(+)$1	1	207	219	19.0172
.))))))(((((	chr13:107196361-107196609(-)$1	1	183	195	18.1551
..))))....))	chr19:10670185-10670485(-)$1	1	158	170	21.6896
....(((.((((	chr10:43292381-43292626(+)$1	1	133	145	18.9310
((((.((((..(	chr12:104341084-104341308(+)$1	1	104	116	23.2413
............	chr14:102551080-102551302(-)$1	1	123	135	25.7413
............	chr6:44217991-44218199(+)$1	1	180	192	23.2413
..(((((....(	chr19:15510025-15510286(-)$1	1	136	148	17.6379
............	chr6:149826607-149826922(-)$1	1	113	125	22.2068
....((.((((.	chr12:80190968-80191267(-)$1	1	130	142	18.5000
)...((((...(	chr1:111490496-111490751(-)$1	1	89	101	17.8103
..(.........	chr9:100773454-100773665(+)$1	1	98	110	19.6206
.(((((((((((	chr14:73577601-73577875(+)$1	1	49	61	22.6379
............	chr6:7606188-7606504(+)$1	1	183	195	19.2758
.)).......))	chr2:95773898-95774205(-)$1	1	192	204	23.8448
((((........	chr1:205689527-205689798(-)$1	1	29	41	18.2413
.)))))......	chr18:252436-252684(-)$1	1	100	112	17.9827
((.....)))..	chr2:232325463-232325673(-)$1	1	99	111	17.9827
))))))......	chr2:232327812-232328047(-)$1	1	105	117	22.3793
))))).))....	chr1:226349223-226349493(-)$1	1	180	192	21.6034

#PSSM
A : 0.68	a : 0.20	C : 0.03	U : 0.01	c : 0.01	G : 0.01	g : 0.01	
A : 0.58	a : 0.24	U : 0.12	G : 0.05	
G : 0.60	g : 0.20	C : 0.06	A : 0.06	a : 0.01	c : 0.01	U : 0.01	
A : 0.65	a : 0.22	C : 0.05	U : 0.03	G : 0.01	g : 0.01	
A : 0.58	a : 0.18	G : 0.08	U : 0.08	g : 0.03	u : 0.01	
G : 0.65	g : 0.22	A : 0.06	C : 0.01	a : 0.01	U : 0.01	
A : 0.67	a : 0.24	C : 0.03	G : 0.03	U : 0.01	
A : 0.70	a : 0.24	G : 0.05	
G : 0.68	g : 0.20	A : 0.06	a : 0.03	
A : 0.70	a : 0.24	G : 0.05	
G : 0.39	A : 0.31	a : 0.13	g : 0.08	U : 0.05	u : 0.01	
G : 0.56	g : 0.15	A : 0.15	a : 0.06	U : 0.03	C : 0.01	

#score	1171.4482758620697
#seq	58
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF121XLA_HNRNPA1_transcript_m3_run2.nuc.txt

#NT
aaaagaaaa	chrX:132718293-132718583(-)$1	290	60	69	15.3333
augagaaau	chrX:133042499-133042756(-)$1	257	154	163	11.5614
aggagaaag	chr12:9234979-9235258(-)$1	279	54	63	11.8245
AAGAGAAAA	chrX:132979402-132979647(-)$1	245	59	68	18.3157
aggagaaua	chr14:95086827-95087090(+)$1	263	99	108	11.1228
UAGGGAAAA	chr3:133478021-133478227(+)$1	206	93	102	10.8596
AAGAGAGAG	chr2:101473245-101473552(+)$1	307	22	31	10.7719
AAGUUAaaa	chr21:46195716-46195925(-)$1	209	188	197	11.0350
ACUAGAAAA	chrX:153628243-153628492(+)$1	249	146	155	12.0000
augaggaaa	chr12:103246728-103246956(-)$1	228	17	26	11.7368
aagggacaa	chr2:11721588-11721850(+)$1	262	10	19	10.5087
AUGAAAAAA	chr5:27481714-27481967(+)$1	253	89	98	11.5614
AAAAAAAAA	chrX:133034328-133034621(-)$1	293	20	29	11.5614
AAGAUAAAA	chrX:133045283-133045535(-)$1	252	100	109	14.6315
UAGAGUAAA	chr20:30298439-30298727(-)$1	288	193	202	10.9473
AAGAGUAAG	chr19:57346153-57346415(-)$1	262	224	233	11.2982
AAGAGCAAA	chrX:133019010-133019282(-)$1	272	176	185	14.7192
AAGAGAAUA	chr11:2719371-2719609(-)$1	238	76	85	14.1929
aagagagaa	chr8:121816283-121816587(-)$1	304	150	159	14.1929
AACAGUAAA	chr8:17764917-17765169(-)$1	252	142	151	11.6491
ACUAGAAAA	chrX:153628368-153628637(+)$1	269	21	30	12.0000
AAUAGCAAA	chr20:42088156-42088431(+)$1	275	140	149	11.7368
AAGUUAaaa	chr21:46195725-46195929(-)$1	204	192	201	11.0350
GAGAGAAAC	chr2:42397674-42397941(+)$1	267	131	140	10.5087
uagggaaaa	chr2:153198308-153198641(+)$1	333	29	38	10.8596
AAGUGAAAU	chr11:65193101-65193308(+)$1	207	63	72	10.9473
GAGAGGAAA	chr14:23448929-23449206(-)$1	277	26	35	10.8596
AAAACAAaa	chr12:103248128-103248389(-)$1	261	212	221	11.2982
AAUAGAAAA	chr3:171860334-171860630(+)$1	296	60	69	15.3333
GAGAGAAUA	chr12:53435280-53435522(+)$1	242	31	40	10.3333
AAGAGAAAA	chrX:132979447-132979702(-)$1	255	114	123	18.3157
AAGAACAAA	chr3:30734709-30734974(+)$1	265	129	138	10.9473
AAGUUAaaa	chr21:46195684-46195916(-)$1	232	179	188	11.0350
AGGAGAAAU	chrX:133018795-133019062(-)$1	267	5	14	11.4736
accagaaaa	chr16:50585423-50585679(+)$1	256	220	229	11.9122
AGCAGAAAA	chr11:65270601-65270813(+)$1	212	32	41	12.1754
AAGAGAGAA	chr3:171777675-171777972(+)$1	297	240	249	14.1929
AUGAGAAAA	chr6:119610903-119611175(-)$1	272	223	232	15.3333
AACAGAUAA	chr17:53361182-53361438(+)$1	256	159	168	10.9473
AAGCUAAAA	chr2:21265585-21265836(-)$1	251	132	141	10.7719
AGCAGAAAA	chr11:65270568-65270801(+)$1	233	65	74	12.1754
AAAAGAAGA	chr11:93467440-93467711(-)$1	271	50	59	10.9473
aaaaaaaaa	chr17:64214169-64214471(-)$1	302	26	35	11.5614
UAUAGAAAA	chr3:48754018-48754254(-)$1	236	226	235	11.5614
AUGAGCAAA	chr12:9252481-9252737(-)$1	256	2	11	11.7368
AUGAGGAAA	chr11:65272424-65272644(+)$1	220	53	62	11.7368
AAGAGUCAA	chrX:133022745-133023066(-)$1	321	155	164	10.5964
AAACGAAAA	chr12:9233944-9234207(-)$1	263	195	204	11.4736
UAUAGAAAA	chr3:48754004-48754218(-)$1	214	190	199	11.5614
AGGAGAAAG	chr3:30726752-30727017(+)$1	265	128	137	11.8245
AAGAGACAG	chr11:2698198-2698486(-)$1	288	43	52	10.7719
AAGAGAAUG	chr11:64542457-64542759(-)$1	302	81	90	10.7719
AUGAGGAAA	chr11:65272445-65272652(+)$1	207	32	41	11.7368
AAGAGAAAA	chr11:65266546-65266775(+)$1	229	157	166	18.3157
AAGAGAACA	chr16:50617784-50618085(+)$1	301	113	122	13.9298
GAGUGAAAA	chrX:133028984-133029229(-)$1	245	42	51	10.8596

#otherMatches

#Struct PSSM
33ccc:hhh	chrX:133006916-133007217(-)$1	301	180	189	11.2105
qqqqqqqff	chrX:132718293-132718583(-)$1	290	60	69	15.3333
oooobb]ff	chrX:133042499-133042756(-)$1	257	154	163	11.5614
ddddhhhhh	chr12:9234979-9235258(-)$1	279	54	63	11.8245
:EEEEEOOO	chrX:132979402-132979647(-)$1	245	59	68	18.3157
bbqqqqqqq	chr14:95086827-95087090(+)$1	263	99	108	11.1228
FFFFFF:::	chr3:133478021-133478227(+)$1	206	93	102	10.8596
oooa55555	chr2:101473245-101473552(+)$1	307	22	31	10.7719
:::::::::	chr21:46195716-46195925(-)$1	209	188	197	11.0350
ggg::::::	chrX:153628243-153628492(+)$1	249	146	155	12.0000
ddd]ccc::	chr12:103246728-103246956(-)$1	228	17	26	11.7368
MCCCKKCCC	chr2:11721588-11721850(+)$1	262	10	19	10.5087
fff::::::	chr5:27481714-27481967(+)$1	253	89	98	11.5614
::::::HHH	chrX:133034328-133034621(-)$1	293	20	29	11.5614
IIIIIIJJJ	chrX:133045283-133045535(-)$1	252	100	109	14.6315
HH}EEEEEY	chr20:30298439-30298727(-)$1	288	193	202	10.9473
c::::::::	chr19:57346153-57346415(-)$1	262	224	233	11.2982
eeee66666	chrX:133019010-133019282(-)$1	272	176	185	14.7192
errrrrrrr	chr11:2719371-2719609(-)$1	238	76	85	14.1929
^^^^^^^^^	chr8:121816283-121816587(-)$1	304	150	159	14.1929
!afffffft	chr8:17764917-17765169(-)$1	252	142	151	11.6491
qqqqqqqqe	chrX:153628368-153628637(+)$1	269	21	30	12.0000
rrrrbb]cc	chr20:42088156-42088431(+)$1	275	140	149	11.7368
:::::::::	chr21:46195725-46195929(-)$1	204	192	201	11.0350
IIIIIII==	chr2:42397674-42397941(+)$1	267	131	140	10.5087
{DDDDPPPP	chr2:153198308-153198641(+)$1	333	29	38	10.8596
FFFMMMMFF	chr11:65193101-65193308(+)$1	207	63	72	10.9473
ppppccc:G	chr14:23448929-23449206(-)$1	277	26	35	10.8596
@@@@@@@@@	chr12:103248128-103248389(-)$1	261	212	221	11.2982
drrrrrrrr	chr3:171860334-171860630(+)$1	296	60	69	15.3333
=========	chr12:53435280-53435522(+)$1	242	31	40	10.3333
HHHHHHHH:	chrX:132979447-132979702(-)$1	255	114	123	18.3157
e]ccc:fff	chr3:30734709-30734974(+)$1	265	129	138	10.9473
:::::::::	chr21:46195684-46195916(-)$1	232	179	188	11.0350
:cccuuuuu	chrX:133018795-133019062(-)$1	267	5	14	11.4736
mmm======	chr16:50585423-50585679(+)$1	256	220	229	11.9122
eeeee####	chr11:65270601-65270813(+)$1	212	32	41	12.1754
GGGG?????	chr3:171777675-171777972(+)$1	297	240	249	14.1929
:ggggggg[	chr6:119610903-119611175(-)$1	272	223	232	15.3333
d!!ffffff	chr17:53361182-53361438(+)$1	256	159	168	10.9473
e88888888	chr2:21265585-21265836(-)$1	251	132	141	10.7719
]eeeee:ff	chr11:65270568-65270801(+)$1	233	65	74	12.1754
mmmddddee	chr11:93467440-93467711(-)$1	271	50	59	10.9473
:::::::::	chr17:64214169-64214471(-)$1	302	26	35	11.5614
g:DDDD:::	chr3:48754018-48754254(-)$1	236	226	235	11.5614
FFFFFF{EE	chr12:9252481-9252737(-)$1	256	2	11	11.7368
sbb22ccc2	chr11:65272424-65272644(+)$1	220	53	62	11.7368
ff!!aoooo	chrX:133022745-133023066(-)$1	321	155	164	10.5964
:::::::::	chr12:9233944-9234207(-)$1	263	195	204	11.4736
g::::::::	chr3:48754004-48754218(-)$1	214	190	199	11.5614
vvvvvvvvv	chr3:30726752-30727017(+)$1	265	128	137	11.8245
qqqqqq===	chr11:2698198-2698486(-)$1	288	43	52	10.7719
IIIIIeeee	chr11:64542457-64542759(-)$1	302	81	90	10.7719
yyyyyyyyy	chr11:65272445-65272652(+)$1	207	32	41	11.7368
ffff77777	chr11:65266546-65266775(+)$1	229	157	166	18.3157
ggggggg::	chr16:50617784-50618085(+)$1	301	113	122	13.9298
eeeee::::	chrX:133028984-133029229(-)$1	245	42	51	10.8596

#DB
..))).(((	chrX:133006916-133007217(-)$1	1	180	189	11.2105
.......))	chrX:132718293-132718583(-)$1	1	60	69	15.3333
....)).))	chrX:133042499-133042756(-)$1	1	154	163	11.5614
))))(((((	chr12:9234979-9235258(-)$1	1	54	63	11.8245
.(((((...	chrX:132979402-132979647(-)$1	1	59	68	18.3157
((.......	chr14:95086827-95087090(+)$1	1	99	108	11.1228
((((((...	chr3:133478021-133478227(+)$1	1	93	102	10.8596
...).....	chr2:101473245-101473552(+)$1	1	22	31	10.7719
.........	chr21:46195716-46195925(-)$1	1	188	197	11.0350
)))......	chrX:153628243-153628492(+)$1	1	146	155	12.0000
))).)))..	chr12:103246728-103246956(-)$1	1	17	26	11.7368
.(((..(((	chr2:11721588-11721850(+)$1	1	10	19	10.5087
)))......	chr5:27481714-27481967(+)$1	1	89	98	11.5614
......(((	chrX:133034328-133034621(-)$1	1	20	29	11.5614
)))))))))	chrX:133045283-133045535(-)$1	1	100	109	14.6315
)).))))).	chr20:30298439-30298727(-)$1	1	193	202	10.9473
)........	chr19:57346153-57346415(-)$1	1	224	233	11.2982
)))).....	chrX:133019010-133019282(-)$1	1	176	185	14.7192
(........	chr11:2719371-2719609(-)$1	1	76	85	14.1929
.........	chr8:121816283-121816587(-)$1	1	150	159	14.1929
.(((((((.	chr8:17764917-17765169(-)$1	1	142	151	11.6491
........)	chrX:153628368-153628637(+)$1	1	21	30	12.0000
....)).))	chr20:42088156-42088431(+)$1	1	140	149	11.7368
.........	chr21:46195725-46195929(-)$1	1	192	201	11.0350
(((((((((	chr2:42397674-42397941(+)$1	1	131	140	10.5087
.((((....	chr2:153198308-153198641(+)$1	1	29	38	10.8596
(((....((	chr11:65193101-65193308(+)$1	1	63	72	10.9473
....))).(	chr14:23448929-23449206(-)$1	1	26	35	10.8596
.........	chr12:103248128-103248389(-)$1	1	212	221	11.2982
(........	chr3:171860334-171860630(+)$1	1	60	69	15.3333
)))))))))	chr12:53435280-53435522(+)$1	1	31	40	10.3333
((((((((.	chrX:132979447-132979702(-)$1	1	114	123	18.3157
).))).(((	chr3:30734709-30734974(+)$1	1	129	138	10.9473
.........	chr21:46195684-46195916(-)$1	1	179	188	11.0350
.(((.....	chrX:133018795-133019062(-)$1	1	5	14	11.4736
...))))))	chr16:50585423-50585679(+)$1	1	220	229	11.9122
(((((....	chr11:65270601-65270813(+)$1	1	32	41	12.1754
)))).....	chr3:171777675-171777972(+)$1	1	240	249	14.1929
.(((((((.	chr6:119610903-119611175(-)$1	1	223	232	15.3333
(..((((((	chr17:53361182-53361438(+)$1	1	159	168	10.9473
)........	chr2:21265585-21265836(-)$1	1	132	141	10.7719
.))))).((	chr11:65270568-65270801(+)$1	1	65	74	12.1754
...))))((	chr11:93467440-93467711(-)$1	1	50	59	10.9473
.........	chr17:64214169-64214471(-)$1	1	26	35	11.5614
).))))...	chr3:48754018-48754254(-)$1	1	226	235	11.5614
((((((.((	chr12:9252481-9252737(-)$1	1	2	11	11.7368
.))..))).	chr11:65272424-65272644(+)$1	1	53	62	11.7368
((..(....	chrX:133022745-133023066(-)$1	1	155	164	10.5964
.........	chr12:9233944-9234207(-)$1	1	195	204	11.4736
)........	chr3:48754004-48754218(-)$1	1	190	199	11.5614
.........	chr3:30726752-30727017(+)$1	1	128	137	11.8245
......)))	chr11:2698198-2698486(-)$1	1	43	52	10.7719
(((((((((	chr11:64542457-64542759(-)$1	1	81	90	10.7719
.........	chr11:65272445-65272652(+)$1	1	32	41	11.7368
)))).....	chr11:65266546-65266775(+)$1	1	157	166	18.3157
)))))))..	chr16:50617784-50618085(+)$1	1	113	122	13.9298
)))))....	chrX:133028984-133029229(-)$1	1	42	51	10.8596

#PSSM
A : 0.68	a : 0.15	U : 0.07	G : 0.07	u : 0.01	
A : 0.63	a : 0.08	U : 0.08	G : 0.07	u : 0.03	g : 0.03	C : 0.03	c : 0.01	
G : 0.57	g : 0.12	U : 0.10	A : 0.07	C : 0.07	a : 0.03	c : 0.01	
A : 0.66	a : 0.14	U : 0.08	G : 0.03	g : 0.03	C : 0.03	
G : 0.66	g : 0.15	U : 0.08	A : 0.05	C : 0.01	a : 0.01	
A : 0.63	a : 0.15	U : 0.07	C : 0.07	G : 0.05	g : 0.01	
A : 0.68	a : 0.19	G : 0.03	C : 0.03	c : 0.01	g : 0.01	U : 0.01	
A : 0.66	a : 0.22	U : 0.05	u : 0.01	G : 0.01	C : 0.01	
A : 0.59	a : 0.21	G : 0.10	U : 0.03	u : 0.01	g : 0.01	C : 0.01	

#score	694.61403508772
#seq	57
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_UTR_m1_run1.nuc.txt

#NT
AAGAGAAAA	chr6:64422239-64422514(+)$1	275	10	19	17.5681
aagaaaaaa	chrX:106307587-106307921(-)$1	334	294	303	20.8636
AAUAAAAAA	chrX:106309747-106310031(-)$1	284	111	120	16.4318
AAGAAAGAG	chr4:761414-761661(-)$1	247	143	152	13.8181
AAGAUAAAA	chr7:23561699-23562028(-)$1	329	32	41	17.2272
CAGAAAAAA	chr17:41246386-41246669(-)$1	283	128	137	16.7727
AAGAAAAAC	chr18:9255706-9256035(+)$1	329	14	23	17.9090
aagaaaaaa	chr10:38410951-38411223(+)$1	272	221	230	20.8636
AAGACAAAA	chr17:41245941-41246199(-)$1	258	21	30	17.3409
AAGAAAAAA	chr4:761155-761423(-)$1	268	77	86	20.8636
AAUAAAAAA	chr17:41244022-41244279(-)$1	257	52	61	16.4318
AAGAAAAAA	chr4:761223-761500(-)$1	277	154	163	20.8636
aacaaaaaa	chr6:146228901-146229180(-)$1	279	16	25	16.3181
AAGAUAAAA	chr7:44923009-44923317(-)$1	308	103	112	17.2272
UAGAAAAAA	chr15:40914727-40914956(+)$1	229	172	181	16.9999
AAGACAAAG	chr15:40914291-40914596(+)$1	305	89	98	14.6136
aaggaaaaa	chr18:9255272-9255515(+)$1	243	9	18	17.4545
AAGAAAACA	chr3:121415970-121416260(-)$1	290	27	36	16.8863
AAGAAAAUA	chr2:109086566-109086892(+)$1	326	180	189	16.9999
AAGAAAAAC	chr18:9255527-9255771(+)$1	244	193	202	17.9090
CAGGAAAAA	chr1:46073068-46073296(+)$1	228	100	109	13.3636
AAGAAAAGA	chr3:121414284-121414551(-)$1	267	220	229	16.8863
AAGUGAAAA	chr6:111694048-111694310(-)$1	262	65	74	14.0454
AAGAACAAA	chr6:3270301-3270562(+)$1	261	1	10	16.3181
AAGGCAAAA	chr7:5105407-5105668(+)$1	261	121	130	13.9318
AAGAAAAUA	chr1:92853100-92853521(+)$1	421	132	141	16.9999
AAGAAAAAU	chr2:109087048-109087306(+)$1	258	85	94	17.4545
aagaaauag	chr7:43671774-43672045(-)$1	271	31	40	13.8181
UAGAAAAAA	chr15:40914836-40915095(+)$1	259	63	72	16.9999
AAGAAAAAC	chr12:54396516-54396819(+)$1	303	73	82	17.9090
AAGGAAAGA	chr15:40915230-40915535(+)$1	305	130	139	13.4772
aagagaaag	chr4:2330640-2330998(-)$1	358	2	11	14.8409
aagaaaaac	chr8:59473933-59474219(+)$1	286	200	209	17.9090
aagaaauag	chr7:43671845-43672106(-)$1	261	92	101	13.8181
aagaacaaa	chr4:2330477-2330763(-)$1	286	202	211	16.3181
AAGAGAAAG	chr2:109088096-109088376(+)$1	280	12	21	14.8409
AAGAAAAAA	chr17:41245419-41245721(-)$1	302	124	133	20.8636
AAGUAAACA	chr17:41243693-41243933(-)$1	240	83	92	13.3636
UAGAAAAAA	chr18:9255370-9255620(+)$1	250	53	62	16.9999
AAGUGAAAA	chr6:111694126-111694442(-)$1	316	197	206	14.0454
UAGUAAAAA	chr3:40577044-40577326(+)$1	282	15	24	13.4772
aagaaaaua	chr18:9254687-9254947(+)$1	260	61	70	16.9999
AAGAAAGAG	chr1:203766418-203766703(+)$1	285	29	38	13.8181

#otherMatches

#Struct PSSM
33ccc:::d	chrX:106309633-106309893(-)$1	260	170	179	14.4999
:::::::::	chr6:64422239-64422514(+)$1	275	10	19	17.5681
:::::::::	chrX:106307587-106307921(-)$1	334	294	303	20.8636
:::::::::	chrX:106309747-106310031(-)$1	284	111	120	16.4318
::FFFFFF{	chr4:761414-761661(-)$1	247	143	152	13.8181
::ccc''''	chr7:23561699-23562028(-)$1	329	32	41	17.2272
bb:::::::	chr17:41246386-41246669(-)$1	283	128	137	16.7727
:::::::DD	chr18:9255706-9256035(+)$1	329	14	23	17.9090
:::::::::	chr10:38410951-38411223(+)$1	272	221	230	20.8636
f::::::::	chr17:41245941-41246199(-)$1	258	21	30	17.3409
!cccppppp	chr4:761155-761423(-)$1	268	77	86	20.8636
e((((((((	chr17:41244022-41244279(-)$1	257	52	61	16.4318
gggg66666	chr4:761223-761500(-)$1	277	154	163	20.8636
IIIIIIIII	chr6:146228901-146229180(-)$1	279	16	25	16.3181
:::::::EE	chr7:44923009-44923317(-)$1	308	103	112	17.2272
dqqqqqqqq	chr15:40914727-40914956(+)$1	229	172	181	16.9999
JJJJJJJJJ	chr15:40914291-40914596(+)$1	305	89	98	14.6136
:::::::::	chr18:9255272-9255515(+)$1	243	9	18	17.4545
^^^^^^^^^	chr3:121415970-121416260(-)$1	290	27	36	16.8863
:::::::cc	chr2:109086566-109086892(+)$1	326	180	189	16.9999
wwwwwwwwc	chr18:9255527-9255771(+)$1	244	193	202	17.9090
000000000	chr1:46073068-46073296(+)$1	228	100	109	13.3636
:::::::::	chr3:121414284-121414551(-)$1	267	220	229	16.8863
333dddd::	chr6:111694048-111694310(-)$1	262	65	74	14.0454
::::::eee	chr6:3270301-3270562(+)$1	261	1	10	16.3181
##ddddnnn	chr7:5105407-5105668(+)$1	261	121	130	13.9318
ffffooooo	chr1:92853100-92853521(+)$1	421	132	141	16.9999
WWWWWWWWW	chr2:109087048-109087306(+)$1	258	85	94	17.4545
pppppp===	chr7:43671774-43672045(-)$1	271	31	40	13.8181
dqqqqqqqq	chr15:40914836-40915095(+)$1	259	63	72	16.9999
:::::::::	chr12:54396516-54396819(+)$1	303	73	82	17.9090
OOHHHHHHH	chr15:40915230-40915535(+)$1	305	130	139	13.4772
:::::::::	chr4:2330640-2330998(-)$1	358	2	11	14.8409
[bbnnnnnb	chr8:59473933-59474219(+)$1	286	200	209	17.9090
pppppp===	chr7:43671845-43672106(-)$1	261	92	101	13.8181
:::::ccc!	chr4:2330477-2330763(-)$1	286	202	211	16.3181
ggggg!!bb	chr2:109088096-109088376(+)$1	280	12	21	14.8409
:::::::::	chr17:41245419-41245721(-)$1	302	124	133	20.8636
LLCCC::::	chr17:41243693-41243933(-)$1	240	83	92	13.3636
&&bb%%%%%	chr18:9255370-9255620(+)$1	250	53	62	16.9999
::dddd!!g	chr6:111694126-111694442(-)$1	316	197	206	14.0454
F:cccmmmm	chr3:40577044-40577326(+)$1	282	15	24	13.4772
E{DDDD:::	chr18:9254687-9254947(+)$1	260	61	70	16.9999
ee:::::::	chr1:203766418-203766703(+)$1	285	29	38	13.8181

#DB
..)))...(	chrX:106309633-106309893(-)$1	1	170	179	14.4999
.........	chr6:64422239-64422514(+)$1	1	10	19	17.5681
.........	chrX:106307587-106307921(-)$1	1	294	303	20.8636
.........	chrX:106309747-106310031(-)$1	1	111	120	16.4318
..((((((.	chr4:761414-761661(-)$1	1	143	152	13.8181
..(((....	chr7:23561699-23562028(-)$1	1	32	41	17.2272
)).......	chr17:41246386-41246669(-)$1	1	128	137	16.7727
.......((	chr18:9255706-9256035(+)$1	1	14	23	17.9090
.........	chr10:38410951-38411223(+)$1	1	221	230	20.8636
)........	chr17:41245941-41246199(-)$1	1	21	30	17.3409
.(((.....	chr4:761155-761423(-)$1	1	77	86	20.8636
(........	chr17:41244022-41244279(-)$1	1	52	61	16.4318
)))).....	chr4:761223-761500(-)$1	1	154	163	20.8636
(((((((((	chr6:146228901-146229180(-)$1	1	16	25	16.3181
.......))	chr7:44923009-44923317(-)$1	1	103	112	17.2272
(........	chr15:40914727-40914956(+)$1	1	172	181	16.9999
(((((((((	chr15:40914291-40914596(+)$1	1	89	98	14.6136
.........	chr18:9255272-9255515(+)$1	1	9	18	17.4545
.........	chr3:121415970-121416260(-)$1	1	27	36	16.8863
.......((	chr2:109086566-109086892(+)$1	1	180	189	16.9999
........)	chr18:9255527-9255771(+)$1	1	193	202	17.9090
.........	chr1:46073068-46073296(+)$1	1	100	109	13.3636
.........	chr3:121414284-121414551(-)$1	1	220	229	16.8863
...))))..	chr6:111694048-111694310(-)$1	1	65	74	14.0454
......(((	chr6:3270301-3270562(+)$1	1	1	10	16.3181
..((((...	chr7:5105407-5105668(+)$1	1	121	130	13.9318
((((.....	chr1:92853100-92853521(+)$1	1	132	141	16.9999
.........	chr2:109087048-109087306(+)$1	1	85	94	17.4545
......)))	chr7:43671774-43672045(-)$1	1	31	40	13.8181
(........	chr15:40914836-40915095(+)$1	1	63	72	16.9999
.........	chr12:54396516-54396819(+)$1	1	73	82	17.9090
..(((((((	chr15:40915230-40915535(+)$1	1	130	139	13.4772
.........	chr4:2330640-2330998(-)$1	1	2	11	14.8409
.((.....)	chr8:59473933-59474219(+)$1	1	200	209	17.9090
......)))	chr7:43671845-43672106(-)$1	1	92	101	13.8181
.....(((.	chr4:2330477-2330763(-)$1	1	202	211	16.3181
(((((..((	chr2:109088096-109088376(+)$1	1	12	21	14.8409
.........	chr17:41245419-41245721(-)$1	1	124	133	20.8636
..(((....	chr17:41243693-41243933(-)$1	1	83	92	13.3636
..((.....	chr18:9255370-9255620(+)$1	1	53	62	16.9999
..((((..(	chr6:111694126-111694442(-)$1	1	197	206	14.0454
(.(((....	chr3:40577044-40577326(+)$1	1	15	24	13.4772
(.((((...	chr18:9254687-9254947(+)$1	1	61	70	16.9999
)).......	chr1:203766418-203766703(+)$1	1	29	38	13.8181

#PSSM
A : 0.61	a : 0.25	U : 0.09	C : 0.04	
A : 0.74	a : 0.25	
G : 0.70	g : 0.22	U : 0.04	c : 0.02	
A : 0.59	a : 0.20	U : 0.09	G : 0.06	g : 0.04	
A : 0.54	a : 0.22	G : 0.09	C : 0.06	U : 0.04	g : 0.02	
A : 0.72	a : 0.22	C : 0.02	c : 0.02	
A : 0.70	a : 0.20	G : 0.04	u : 0.04	
A : 0.61	a : 0.22	C : 0.04	U : 0.04	G : 0.04	u : 0.02	
A : 0.56	a : 0.13	G : 0.09	C : 0.06	g : 0.06	c : 0.04	U : 0.02	

#score	724.3636363636359
#seq	44
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_UTR_m3_run2.nuc.txt

#NT
CCAGCCCAGAGAGACCCCCCGAGCCCGCGGCACAGGCGGCGGCGGCGCUGAGCGGGCUCGACCAGCCGAGCGAGCGGCGGCCCCGGCUCCUCCUCGUCCGGCGCCAGCAGCCCGCGCCCCGCGCCCGCACUCGGCCAGCCGAGACCCGCCUCCCGCCCGCCCGCCGGCCUCGUGAGGGACGCGCCGAGCCGGGCGGCCGAGAGCGGCGGCGGCUGGGAGCGCGUCGGGCCCGGGCGGAAAGUGCCUgcggggggcggg	chr6:163835693-163836053(+)$1	360	100	358	384.0000

#otherMatches

#Struct PSSM
xxxxxxxffffff]cccbb[eeeee[ccc[bbddddmmmmdddd]bb]ccceeeee]bb:BBCCC}DDDD:ccc[cccbbssssssssssbb]ccc]ccc::::::JJJJJJJJJJ:::hhhhhhhh"""ffffff!!dddd[a[ccc[ccc$$$$$eeeeennnnneeeee666666ccc333ccc]adddd]ffffff4444hhhhhhhh::::ffffff[bb!!dddd[aooooooa]dddd22bbffffffJJJ	chr10:61666073-61666428(-)$1	355	90	348	384.0000
c22bbbb7777777bb]bbiiiiiiiiiccc[a!!bbmmmmbb]a]ccc22iiiiiiiii:bb[ddddooooooddddbbBBBBYYIIIIIIIII}CCCYYCCCYYBB:FFFFFF{FFFFFFeeeee[bb[bb[ggggggg####eeeee[aabb[gggggggadddd!!cccnnnnnccc]dddd]a]ggggggg]bb]a]a]eeeeeggggggg333bb]bbeeeee::eeeeennnnneeeeeFFFFFF}FFFFF	chr6:163835693-163836053(+)$1	360	100	358	384.0000

#DB
.......)))))).)))((.(((((.(((.((((((....)))).)).)))))))).)).))))).)))).(((.(((((..........)).))).)))......((((((((((...((((((((...((((((..((((.(.(((.(((.....(((((.....)))))......)))...))).))))).))))))....))))))))....((((((.((..((((.(......).))))..)))))))))))	chr10:61666073-61666428(-)$1	1	90	348	384.0000
)..)))).......)).))((((((((((((.(..((....)).).)))..))))))))).((.((((......))))))))))..))))))))).)))..)))..)).((((((.(((((((((((.((.((.(((((((....(((((.((((.((((((((((((..(((.....))).)))).).))))))).)).).).))))))))))))...)).)))))))..(((((.....))))))))))).)))))	chr6:163835693-163836053(+)$1	1	100	358	384.0000

#PSSM
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
g : 1.00	
g : 1.00	
c : 0.50	g : 0.50	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
c : 0.50	g : 0.50	

#score	768.0
#seq	2
#width	258
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_CDS_m3_run1.nuc.txt

#NT
UGGGGGG	chr22:20110119-20110364(+)$1	245	172	179	17.5116
UGUGGGG	chr6:33231022-33231372(-)$1	350	119	126	14.1395
UGUGGGG	chr16:75270555-75270830(-)$1	275	91	98	14.1395
UGGGGGG	chr17:80141704-80141986(-)$1	282	106	113	17.5116
UGGGGGG	chr22:20110056-20110319(+)$1	263	235	242	17.5116
uggggug	chr9:67793822-67794075(-)$1	253	175	182	13.6744
UGGGGAG	chr11:47380306-47380572(-)$1	266	167	174	13.7906
UGGUGGG	chr1:987290-987531(+)$1	241	161	168	13.3255
UGUGGGG	chr19:42398110-42398397(+)$1	287	30	37	14.1395
UGGGUGG	chr3:13415244-13415497(-)$1	253	88	95	13.7906
UGGGGGC	chr7:1478502-1478766(-)$1	264	126	133	13.0930
UGUGGGG	chr17:79396525-79396799(+)$1	274	109	116	14.1395
UGGGUGG	chr1:156845356-156845619(+)$1	263	12	19	13.7906
UGGAGGG	chr1:1154193-1154436(-)$1	243	2	9	13.4418
UGGGAGG	chr17:17942662-17942935(+)$1	273	160	167	13.6744
UGGGGGU	chr19:2270345-2270565(+)$1	220	174	181	12.9767
UGGGAGG	chr21:47734477-47734738(-)$1	261	143	150	13.6744
UGGGGGC	chr11:47376992-47377220(-)$1	228	65	72	13.0930
UGGAGGG	chr4:78740027-78740329(-)$1	302	44	51	13.4418
UGGGGGG	chr10:49659533-49659763(-)$1	230	45	52	17.5116
UGGGGGG	chr17:76117552-76117844(-)$1	292	217	224	17.5116
UGGGGGG	chr11:637261-637528(+)$1	267	158	165	17.5116
UGGGGUG	chr3:157820555-157820810(-)$1	255	118	125	13.6744
UGGGGGG	chr4:946116-946380(+)$1	264	5	12	17.5116
UGGUGGG	chr19:16986688-16986982(+)$1	294	254	261	13.3255
UGGGUGG	chr7:1479449-1479728(-)$1	279	222	229	13.7906
UGGGAGG	chr19:17397398-17397665(+)$1	267	217	224	13.6744
UGGGGUG	chr19:47774827-47775044(+)$1	217	15	22	13.6744
UGGGGGG	chr19:50434213-50434481(+)$1	268	51	58	17.5116
UGGGUGG	chr1:101487177-101487581(-)$1	404	127	134	13.7906
ugugggg	chr11:47380067-47380355(-)$1	288	102	109	14.1395
UGGGGAG	chr22:20109980-20110244(+)$1	264	46	53	13.7906
UGGGGAG	chr19:17397330-17397587(+)$1	257	35	42	13.7906
UGAGGGG	chr12:6879222-6879433(+)$1	211	184	191	13.5581
UGGGGGG	chr1:47689635-47689899(-)$1	264	33	40	17.5116
UGGGGGG	chr10:49659563-49659835(-)$1	272	117	124	17.5116
UGUGGGG	chr19:1496433-1496720(+)$1	287	249	256	14.1395
UGGGGGG	chr16:2213901-2214173(+)$1	272	225	232	17.5116
UGGAGGG	chr19:2199826-2200127(+)$1	301	86	93	13.4418
ugcgggg	chr1:11850810-11851087(-)$1	277	111	118	13.5581
ugggggg	chr15:38776581-38776898(+)$1	317	51	58	17.5116
UGGGGGG	chr19:7705417-7705732(+)$1	315	118	125	17.5116

#otherMatches

#Struct PSSM
hhooooo	chr11:47380211-47380459(-)$1	248	54	61	13.7906
F?????B	chr22:20110119-20110364(+)$1	245	172	179	17.5116
"""eeee	chr6:33231022-33231372(-)$1	350	119	126	14.1395
ffff]dd	chr16:75270555-75270830(-)$1	275	91	98	14.1395
=====!!	chr17:80141704-80141986(-)$1	282	106	113	17.5116
EEYYDDD	chr22:20110056-20110319(+)$1	263	235	242	17.5116
gggggg2	chr9:67793822-67794075(-)$1	253	175	182	13.6744
eeee!!a	chr11:47380306-47380572(-)$1	266	167	174	13.7906
oeeeeed	chr1:987290-987531(+)$1	241	161	168	13.3255
hhhhhhh	chr19:42398110-42398397(+)$1	287	30	37	14.1395
e]bb]cc	chr3:13415244-13415497(-)$1	253	88	95	13.7906
meeeee:	chr7:1478502-1478766(-)$1	264	126	133	13.0930
bb]bbDD	chr17:79396525-79396799(+)$1	274	109	116	14.1395
dddd[ee	chr1:156845356-156845619(+)$1	263	12	19	13.7906
CC{DDDD	chr1:1154193-1154436(-)$1	243	2	9	13.4418
bb[ccco	chr17:17942662-17942935(+)$1	273	160	167	13.6744
ddccc[b	chr19:2270345-2270565(+)$1	220	174	181	12.9767
YGGGGGG	chr21:47734477-47734738(-)$1	261	143	150	13.6744
cgggggg	chr11:47376992-47377220(-)$1	228	65	72	13.0930
cciiiii	chr4:78740027-78740329(-)$1	302	44	51	13.4418
dd]bb]h	chr10:49659533-49659763(-)$1	230	45	52	17.5116
ggccc]a	chr17:76117552-76117844(-)$1	292	217	224	17.5116
====[bb	chr11:637261-637528(+)$1	267	158	165	17.5116
mmccc]c	chr3:157820555-157820810(-)$1	255	118	125	13.6744
[iiiiii	chr4:946116-946380(+)$1	264	5	12	17.5116
[gggggg	chr19:16986688-16986982(+)$1	294	254	261	13.3255
mccc:II	chr7:1479449-1479728(-)$1	279	222	229	13.7906
dddd]dd	chr19:17397398-17397665(+)$1	267	217	224	13.6744
#dddd[c	chr19:47774827-47775044(+)$1	217	15	22	13.6744
b[eeeee	chr19:50434213-50434481(+)$1	268	51	58	17.5116
gggg:cc	chr1:101487177-101487581(-)$1	404	127	134	13.7906
2ddddcc	chr11:47380067-47380355(-)$1	288	102	109	14.1395
cc[bb[b	chr22:20109980-20110244(+)$1	264	46	53	13.7906
fffffCC	chr19:17397330-17397587(+)$1	257	35	42	13.7906
ellleee	chr12:6879222-6879433(+)$1	211	184	191	13.5581
GGGGGBB	chr1:47689635-47689899(-)$1	264	33	40	17.5116
EEEEEPP	chr10:49659563-49659835(-)$1	272	117	124	17.5116
:CCCFFF	chr19:1496433-1496720(+)$1	287	249	256	14.1395
cGGGGGG	chr16:2213901-2214173(+)$1	272	225	232	17.5116
ffffffe	chr19:2199826-2200127(+)$1	301	86	93	13.4418
5iiiiii	chr1:11850810-11851087(-)$1	277	111	118	13.5581
c::::::	chr15:38776581-38776898(+)$1	317	51	58	17.5116
hhhhhh:	chr19:7705417-7705732(+)$1	315	118	125	17.5116

#DB
((.....	chr11:47380211-47380459(-)$1	1	54	61	13.7906
).....)	chr22:20110119-20110364(+)$1	1	172	179	17.5116
...((((	chr6:33231022-33231372(-)$1	1	119	126	14.1395
)))).))	chr16:75270555-75270830(-)$1	1	91	98	14.1395
(((((..	chr17:80141704-80141986(-)$1	1	106	113	17.5116
))..)))	chr22:20110056-20110319(+)$1	1	235	242	17.5116
)))))).	chr9:67793822-67794075(-)$1	1	175	182	13.6744
((((..(	chr11:47380306-47380572(-)$1	1	167	174	13.7906
.))))))	chr1:987290-987531(+)$1	1	161	168	13.3255
)))))))	chr19:42398110-42398397(+)$1	1	30	37	14.1395
).)).))	chr3:13415244-13415497(-)$1	1	88	95	13.7906
.))))).	chr7:1478502-1478766(-)$1	1	126	133	13.0930
)).))((	chr17:79396525-79396799(+)$1	1	109	116	14.1395
((((.((	chr1:156845356-156845619(+)$1	1	12	19	13.7906
((.((((	chr1:1154193-1154436(-)$1	1	2	9	13.4418
((.(((.	chr17:17942662-17942935(+)$1	1	160	167	13.6744
(((((.(	chr19:2270345-2270565(+)$1	1	174	181	12.9767
.))))))	chr21:47734477-47734738(-)$1	1	143	150	13.6744
)))))))	chr11:47376992-47377220(-)$1	1	65	72	13.0930
))(((((	chr4:78740027-78740329(-)$1	1	44	51	13.4418
)).)).)	chr10:49659533-49659763(-)$1	1	45	52	17.5116
))))).)	chr17:76117552-76117844(-)$1	1	217	224	17.5116
((((.((	chr11:637261-637528(+)$1	1	158	165	17.5116
..))).)	chr3:157820555-157820810(-)$1	1	118	125	13.6744
.((((((	chr4:946116-946380(+)$1	1	5	12	17.5116
.((((((	chr19:16986688-16986982(+)$1	1	254	261	13.3255
.))).))	chr7:1479449-1479728(-)$1	1	222	229	13.7906
)))).))	chr19:17397398-17397665(+)$1	1	217	224	13.6744
.((((.(	chr19:47774827-47775044(+)$1	1	15	22	13.6744
(.(((((	chr19:50434213-50434481(+)$1	1	51	58	17.5116
)))).((	chr1:101487177-101487581(-)$1	1	127	134	13.7906
.))))((	chr11:47380067-47380355(-)$1	1	102	109	14.1395
((.((.(	chr22:20109980-20110244(+)$1	1	46	53	13.7906
)))))((	chr19:17397330-17397587(+)$1	1	35	42	13.7906
(...)))	chr12:6879222-6879433(+)$1	1	184	191	13.5581
(((((((	chr1:47689635-47689899(-)$1	1	33	40	17.5116
(((((..	chr10:49659563-49659835(-)$1	1	117	124	17.5116
.))))))	chr19:1496433-1496720(+)$1	1	249	256	14.1395
)))))))	chr16:2213901-2214173(+)$1	1	225	232	17.5116
))))))(	chr19:2199826-2200127(+)$1	1	86	93	13.4418
.))))))	chr1:11850810-11851087(-)$1	1	111	118	13.5581
)......	chr15:38776581-38776898(+)$1	1	51	58	17.5116
)))))).	chr19:7705417-7705732(+)$1	1	118	125	17.5116

#PSSM
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	
G : 0.76	U : 0.11	g : 0.04	u : 0.02	A : 0.02	c : 0.02	
G : 0.79	g : 0.09	A : 0.06	U : 0.04	
G : 0.74	g : 0.09	U : 0.09	A : 0.06	
G : 0.76	A : 0.09	g : 0.06	U : 0.04	u : 0.02	
G : 0.83	g : 0.09	C : 0.04	U : 0.02	

#score	638.1162790697675
#seq	43
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_transcript_m3_run1.nuc.txt

#NT
uccuccugccc	chr3:195440077-195440324(+)$1	247	40	51	19.1956
GGCCCCUGCCC	chr6:31901556-31901810(+)$1	254	118	129	19.1956
GACCCCUACCC	chr17:75495520-75495792(+)$1	272	19	30	15.3913
CUCCCCAGCCC	chr17:79825961-79826286(-)$1	325	174	185	16.1521
GACCCCUGUCC	chr6:31236628-31236924(-)$1	296	143	154	15.3913
ccccccucgcc	chr20:57466313-57466601(+)$1	288	38	49	14.4130
AGACCCUGCCC	chr17:80043493-80043732(-)$1	239	152	163	14.8478
UCACCCUGCCC	chr5:176523537-176523777(+)$1	240	213	224	18.4347
CCUGCCUGCCC	chr11:2154348-2154553(-)$1	205	180	191	14.8478
UGCGCCUGCCC	chr11:2159663-2159898(-)$1	235	49	60	16.9130
CACCCCAGCCC	chr16:57417004-57417292(+)$1	288	159	170	16.1521
AGCCCCUGCCC	chr17:7215161-7215409(+)$1	248	131	142	18.7608
ACCCCCUUCCC	chr7:2702077-2702334(+)$1	257	38	49	17.0217
UCCCCCUACCC	chr2:68479301-68479572(-)$1	271	105	116	18.4347
UCUUCCUGCCC	chr19:9940581-9940848(+)$1	267	116	127	15.3913
GCACCCUGCCC	chr11:61633199-61633503(+)$1	304	137	148	17.4565
CCCACCUGCCC	chr12:58115026-58115297(+)$1	271	60	71	18.5434
UCCCCCUUCCC	chr11:65622431-65622687(-)$1	256	203	214	18.4347
UCCCCCGGCCC	chr11:2160017-2160231(-)$1	214	142	153	18.6521
AACCCCAGCCC	chr12:57606779-57607046(+)$1	267	61	72	15.1739
UCCCCCGGCCC	chr11:2159925-2160150(-)$1	225	61	72	18.6521
UCCACCUGUCC	chr11:64897638-64897906(-)$1	268	122	133	15.0652
CACCCCUCCCC	chr20:307742-308002(+)$1	260	71	82	16.1521
AGCCCAUGCCC	chr1:93645612-93645884(-)$1	272	233	244	13.9782
GCCCACUGCCC	chr17:79910521-79910780(-)$1	259	76	87	16.6956
ucucccugccc	chr19:56671706-56672071(+)$1	365	200	211	18.5434
ucccccugcac	chr19:17451400-17451692(+)$1	292	81	92	17.6739
UUCCCCUGGCC	chr6:34212917-34213193(+)$1	276	170	181	16.4782
GACCCCUGCGC	chr19:8468424-8468662(+)$1	238	16	27	14.6304
UCCCCCGGCCC	chr11:2160032-2160247(-)$1	215	158	169	18.6521
CACGCCUGCCC	chr11:2160402-2160612(-)$1	210	69	80	16.5869
cuccccugccc	chr10:71921984-71922296(-)$1	312	59	70	19.8478
UGCCCCUGCCC	chr9:96018489-96018836(+)$1	347	22	33	20.1739
CCCCCCUCCCC	chr17:79223187-79223430(-)$1	243	64	75	18.2173
UCCUCCUCCCC	chr14:55529741-55530002(+)$1	261	106	117	15.4999
CUCCCCUGCCA	chr10:102122339-102122600(+)$1	261	144	155	15.2826
UCCCCCGGCCC	chr11:2159896-2160104(-)$1	208	15	26	18.6521
UCCACCUGCCU	chr11:116703599-116703858(+)$1	259	18	29	14.4130
CCCUCCUGCCC	chr6:31895698-31896005(+)$1	307	50	61	18.7608
CCCGCCUGUCC	chr19:1497434-1497770(+)$1	336	16	27	14.7391
UUCCGCUGCCC	chr14:95053795-95054060(+)$1	265	74	85	15.6086
CCUUCCUGCCC	chr21:45879893-45880187(+)$1	294	113	124	14.9565
GUCCCCUGCCG	chr9:124062097-124062360(+)$1	263	20	31	14.7391
GUCCCCUGGCC	chr12:56555075-56555418(+)$1	343	26	37	15.4999
CCCCCCAGCCC	chr12:125262969-125263224(-)$1	255	143	154	18.2173

#otherMatches

#Struct PSSM
BBBB{DDDD::	chr20:401312-401610(+)$1	298	121	132	17.5652
HHWWWWWWWWW	chr3:195440077-195440324(+)$1	247	40	51	19.1956
hhhhhh[bb!!	chr6:31901556-31901810(+)$1	254	118	129	19.1956
CCCdddd[ccc	chr17:75495520-75495792(+)$1	272	19	30	15.3913
eeebbffffff	chr17:79825961-79826286(-)$1	325	174	185	16.1521
ccc::::::::	chr6:31236628-31236924(-)$1	296	143	154	15.3913
::::::::JJJ	chr20:57466313-57466601(+)$1	288	38	49	14.4130
ddllldddd]d	chr17:80043493-80043732(-)$1	239	152	163	14.8478
DDDDDDD}BBY	chr5:176523537-176523777(+)$1	240	213	224	18.4347
EEEE}FFFFFF	chr11:2154348-2154553(-)$1	205	180	191	14.8478
eeee7777777	chr11:2159663-2159898(-)$1	235	49	60	16.9130
:::::::::::	chr16:57417004-57417292(+)$1	288	159	170	16.1521
}CCC}DDDDYY	chr17:7215161-7215409(+)$1	248	131	142	18.7608
LLEEEEE::::	chr7:2702077-2702334(+)$1	257	38	49	17.0217
:::::::::::	chr2:68479301-68479572(-)$1	271	105	116	18.4347
BEEEEEYYGGG	chr19:9940581-9940848(+)$1	267	116	127	15.3913
DDD~~~~DDDD	chr11:61633199-61633503(+)$1	304	137	148	17.4565
ooooeeeee]g	chr12:58115026-58115297(+)$1	271	60	71	18.5434
::::::::::c	chr11:65622431-65622687(-)$1	256	203	214	18.4347
ooooooccc::	chr11:2160017-2160231(-)$1	214	142	153	18.6521
f::::::eeee	chr12:57606779-57607046(+)$1	267	61	72	15.1739
$$$$dddd!!b	chr11:2159925-2160150(-)$1	225	61	72	18.6521
555bb]dddd:	chr11:64897638-64897906(-)$1	268	122	133	15.0652
ddwwwwwwwww	chr20:307742-308002(+)$1	260	71	82	16.1521
eee####ccco	chr1:93645612-93645884(-)$1	272	233	244	13.9782
CLLLDDDDLLL	chr17:79910521-79910780(-)$1	259	76	87	16.6956
"""bbdddd[d	chr19:56671706-56672071(+)$1	365	200	211	18.5434
SSSSSSSIIII	chr19:17451400-17451692(+)$1	292	81	92	17.6739
heeeee]dddd	chr6:34212917-34213193(+)$1	276	170	181	16.4782
ccc"""eeeee	chr19:8468424-8468662(+)$1	238	16	27	14.6304
33affffffEE	chr11:2160032-2160247(-)$1	215	158	169	18.6521
eeeee:eeeee	chr11:2160402-2160612(-)$1	210	69	80	16.5869
:::::::::::	chr10:71921984-71922296(-)$1	312	59	70	19.8478
occccccmmmm	chr9:96018489-96018836(+)$1	347	22	33	20.1739
:::::::::::	chr17:79223187-79223430(-)$1	243	64	75	18.2173
:::::::::::	chr14:55529741-55530002(+)$1	261	106	117	15.4999
EE:::::dddd	chr10:102122339-102122600(+)$1	261	144	155	15.2826
OOOOODDDD::	chr11:2159896-2160104(-)$1	208	15	26	18.6521
::::::JJJJJ	chr11:116703599-116703858(+)$1	259	18	29	14.4130
GGGMMMMDDDD	chr6:31895698-31896005(+)$1	307	50	61	18.7608
qqqqqqqcccc	chr19:1497434-1497770(+)$1	336	16	27	14.7391
22bb:::hhhh	chr14:95053795-95054060(+)$1	265	74	85	15.6086
+++++++++++	chr21:45879893-45880187(+)$1	294	113	124	14.9565
ccnnnnnccc]	chr9:124062097-124062360(+)$1	263	20	31	14.7391
ff:bb!!bb!!	chr12:56555075-56555418(+)$1	343	26	37	15.4999
DDD~~~~DDDD	chr12:125262969-125263224(-)$1	255	143	154	18.2173

#DB
((((.((((..	chr20:401312-401610(+)$1	1	121	132	17.5652
((.........	chr3:195440077-195440324(+)$1	1	40	51	19.1956
((((((.((..	chr6:31901556-31901810(+)$1	1	118	129	19.1956
(((((((.(((	chr17:75495520-75495792(+)$1	1	19	30	15.3913
)))((((((((	chr17:79825961-79826286(-)$1	1	174	185	16.1521
)))........	chr6:31236628-31236924(-)$1	1	143	154	15.3913
........(((	chr20:57466313-57466601(+)$1	1	38	49	14.4130
((...)))).)	chr17:80043493-80043732(-)$1	1	152	163	14.8478
))))))).)).	chr5:176523537-176523777(+)$1	1	213	224	18.4347
)))).))))))	chr11:2154348-2154553(-)$1	1	180	191	14.8478
)))).......	chr11:2159663-2159898(-)$1	1	49	60	16.9130
...........	chr16:57417004-57417292(+)$1	1	159	170	16.1521
.))).))))..	chr17:7215161-7215409(+)$1	1	131	142	18.7608
..(((((....	chr7:2702077-2702334(+)$1	1	38	49	17.0217
...........	chr2:68479301-68479572(-)$1	1	105	116	18.4347
))))))..)))	chr19:9940581-9940848(+)$1	1	116	127	15.3913
)))....))))	chr11:61633199-61633503(+)$1	1	137	148	17.4565
....))))).)	chr12:58115026-58115297(+)$1	1	60	71	18.5434
..........(	chr11:65622431-65622687(-)$1	1	203	214	18.4347
......)))..	chr11:2160017-2160231(-)$1	1	142	153	18.6521
)......((((	chr12:57606779-57607046(+)$1	1	61	72	15.1739
....((((..(	chr11:2159925-2160150(-)$1	1	61	72	18.6521
...)).)))).	chr11:64897638-64897906(-)$1	1	122	133	15.0652
((.........	chr20:307742-308002(+)$1	1	71	82	16.1521
(((....(((.	chr1:93645612-93645884(-)$1	1	233	244	13.9782
(...((((...	chr17:79910521-79910780(-)$1	1	76	87	16.6956
...((((((.(	chr19:56671706-56672071(+)$1	1	200	211	18.5434
.......((((	chr19:17451400-17451692(+)$1	1	81	92	17.6739
)))))).))))	chr6:34212917-34213193(+)$1	1	170	181	16.4782
(((...(((((	chr19:8468424-8468662(+)$1	1	16	27	14.6304
..)))))))))	chr11:2160032-2160247(-)$1	1	158	169	18.6521
))))).(((((	chr11:2160402-2160612(-)$1	1	69	80	16.5869
...........	chr10:71921984-71922296(-)$1	1	59	70	19.8478
.)))(((....	chr9:96018489-96018836(+)$1	1	22	33	20.1739
...........	chr17:79223187-79223430(-)$1	1	64	75	18.2173
...........	chr14:55529741-55530002(+)$1	1	106	117	15.4999
((.....((((	chr10:102122339-102122600(+)$1	1	144	155	15.2826
.....((((..	chr11:2159896-2160104(-)$1	1	15	26	18.6521
......(((((	chr11:116703599-116703858(+)$1	1	18	29	14.4130
(((....((((	chr6:31895698-31896005(+)$1	1	50	61	18.7608
.......))))	chr19:1497434-1497770(+)$1	1	16	27	14.7391
..))...((((	chr14:95053795-95054060(+)$1	1	74	85	15.6086
...........	chr21:45879893-45880187(+)$1	1	113	124	14.9565
((.....))).	chr9:124062097-124062360(+)$1	1	20	31	14.7391
)).((..((..	chr12:56555075-56555418(+)$1	1	26	37	15.4999
)))....))))	chr12:125262969-125263224(-)$1	1	143	154	18.2173

#PSSM
U : 0.32	C : 0.26	G : 0.19	A : 0.10	u : 0.06	c : 0.04	
C : 0.47	A : 0.15	G : 0.13	U : 0.13	c : 0.08	u : 0.02	
C : 0.76	c : 0.08	A : 0.06	U : 0.06	u : 0.02	
C : 0.65	c : 0.08	G : 0.08	U : 0.08	A : 0.06	u : 0.02	
C : 0.84	c : 0.10	A : 0.02	G : 0.02	
C : 0.86	c : 0.10	A : 0.02	
U : 0.71	u : 0.10	A : 0.08	G : 0.08	
G : 0.73	g : 0.08	C : 0.06	A : 0.04	U : 0.04	c : 0.02	
C : 0.76	c : 0.08	G : 0.06	U : 0.06	g : 0.02	
C : 0.86	c : 0.08	a : 0.02	G : 0.02	
C : 0.82	c : 0.10	A : 0.02	U : 0.02	G : 0.02	

#score	774.0869565217383
#seq	46
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_transcript_m2_run2.nuc.txt

#NT
UUAUCUU	chr10:98281165-98281484(-)$1	319	106	113	13.4603
UUAUCUU	chr2:160604215-160604496(+)$1	281	79	86	13.4603
UUCUCUG	chr5:95091202-95091513(+)$1	311	32	39	12.5079
uuaucuu	chr14:104378563-104378856(-)$1	293	229	236	13.4603
UUGUCUU	chr6:71108866-71109121(+)$1	255	188	195	13.1428
UUCUAUU	chr4:100869399-100869731(-)$1	332	227	234	12.5079
UGCUCUU	chr3:150262129-150262382(-)$1	253	79	86	12.5873
UUCUCUU	chr11:73965387-73965645(+)$1	258	35	42	16.9523
CUcucuu	chr4:57326634-57326855(+)$1	221	68	75	12.9047
UUAUCUU	chr2:68401926-68402179(+)$1	253	26	33	13.4603
UUCUCAU	chr15:57580425-57580686(+)$1	261	92	99	12.8253
uucuccu	chr2:70132003-70132260(+)$1	257	181	188	12.7460
UUUUCUU	chr4:73950865-73951112(-)$1	247	188	195	13.3809
UCCUCUU	chr3:48786248-48786509(-)$1	261	109	116	12.6666
UCCUCUU	chr5:150648423-150648704(+)$1	281	6	13	12.6666
UUUUCUU	chr1:113454928-113455171(-)$1	243	216	223	13.3809
UGCUCUU	chr14:97010457-97010696(+)$1	239	13	20	12.5873
UUAUCUU	chr16:11642880-11643137(-)$1	257	93	100	13.4603
UUGUCUU	chr11:8017436-8017670(+)$1	234	44	51	13.1428
UUCGCUU	chr5:133996761-133997034(+)$1	273	243	250	12.4285
uucucau	chr1:241795664-241795921(-)$1	257	204	211	12.8253
UUCUCUU	chr11:6635295-6635547(-)$1	252	40	47	16.9523
UUCUUUU	chr6:53140921-53141152(-)$1	231	87	94	12.7460
UUCACUU	chr12:49433747-49434057(-)$1	310	110	117	12.4285
UUCUUUU	chr6:18225111-18225380(-)$1	269	52	59	12.7460
UUCUCCU	chr12:57106194-57106436(-)$1	242	12	19	12.7460
UUCUCUU	chr20:48568769-48569000(+)$1	231	74	81	16.9523
UUCUCUA	chr6:31603955-31604221(+)$1	266	164	171	12.4285
UUCUCUU	chr1:212534462-212534738(+)$1	276	104	111	16.9523
UUCUCUU	chr15:41593484-41593767(+)$1	283	264	271	16.9523
UUCUCUU	chr7:128410067-128410312(+)$1	245	166	173	16.9523
UUAUCUU	chr15:42450920-42451236(-)$1	316	104	111	13.4603
UUCUCUG	chr20:49510841-49511111(-)$1	270	116	123	12.5079
UUCCCUU	chr15:66792584-66792810(-)$1	226	85	92	12.5873
uucucuu	chr7:137564986-137565274(-)$1	288	278	285	16.9523
GUCUCUU	chr12:53906319-53906584(-)$1	265	31	38	12.9047
uucucuc	chr6:27106114-27106359(-)$1	245	119	126	12.5079
UUCUCUU	chr1:28527252-28527536(-)$1	284	35	42	16.9523
UUCUCUU	chr19:16213422-16213707(+)$1	285	92	99	16.9523
UUCUCUC	chr7:155101584-155101833(+)$1	249	99	106	12.5079
UUCUCUU	chr4:103717198-103717455(-)$1	257	70	77	16.9523
UUCUUUU	chr22:32353321-32353615(+)$1	294	27	34	12.7460
AUCUCUU	chr12:54744956-54745204(+)$1	248	44	51	12.9047
UUCUCAU	chr19:41847702-41847974(-)$1	272	102	109	12.8253
UUCUCUU	chr22:19430870-19431157(-)$1	287	223	230	16.9523
UUCUCUU	chr16:47733503-47733790(+)$1	287	193	200	16.9523
CUCUCUU	chr10:76980400-76980607(+)$1	207	39	46	12.9047
CUCUCUU	chr6:37142002-37142220(+)$1	218	93	100	12.9047
UUCUUUU	chr5:179156617-179156829(+)$1	212	47	54	12.7460
GUCUCUU	chr2:242291798-242292066(+)$1	268	224	231	12.9047
UUUUCUU	chr1:111494903-111495156(-)$1	253	32	39	13.3809
UUUUCUU	chr13:30085903-30086189(-)$1	286	21	28	13.3809
UUCCCUU	chr7:106800921-106801180(+)$1	259	86	93	12.5873
AUCUCUU	chr16:68225171-68225479(+)$1	308	76	83	12.9047
UUCUGUU	chr15:41571640-41571885(+)$1	245	150	157	12.5079
UUUUCUU	chr8:101724489-101724706(-)$1	217	1	8	13.3809
UUCUCCU	chr1:52486233-52486472(-)$1	239	76	83	12.7460
UUCCCUU	chr1:228331582-228331850(+)$1	268	60	67	12.5873
UCCUCUU	chr12:124497853-124498152(+)$1	299	12	19	12.6666
GUCUCUU	chr12:46582228-46582491(-)$1	263	41	48	12.9047
AUCUCUU	chr12:54744909-54745156(+)$1	247	91	98	12.9047
UUCUCAU	chr3:183960202-183960499(-)$1	297	22	29	12.8253

#otherMatches

#Struct PSSM
ffff"""	chr6:150063453-150063807(-)$1	354	30	37	12.5079
^^^^^^^	chr10:98281165-98281484(-)$1	319	106	113	13.4603
[eeeeev	chr2:160604215-160604496(+)$1	281	79	86	13.4603
bgggggg	chr5:95091202-95091513(+)$1	311	32	39	12.5079
ppppppp	chr14:104378563-104378856(-)$1	293	229	236	13.4603
=======	chr6:71108866-71109121(+)$1	255	188	195	13.1428
JJJJJJJ	chr4:100869399-100869731(-)$1	332	227	234	12.5079
2ccc:::	chr3:150262129-150262382(-)$1	253	79	86	12.5873
qqqqqqq	chr11:73965387-73965645(+)$1	258	35	42	16.9523
ooooood	chr4:57326634-57326855(+)$1	221	68	75	12.9047
GGGGGGG	chr2:68401926-68402179(+)$1	253	26	33	13.4603
qqqgggg	chr15:57580425-57580686(+)$1	261	92	99	12.8253
^^^^^^^	chr2:70132003-70132260(+)$1	257	181	188	12.7460
ffffmmm	chr4:73950865-73951112(-)$1	247	188	195	13.3809
cc!!eee	chr3:48786248-48786509(-)$1	261	109	116	12.6666
====$$$	chr5:150648423-150648704(+)$1	281	6	13	12.6666
4======	chr1:113454928-113455171(-)$1	243	216	223	13.3809
CCCgggg	chr14:97010457-97010696(+)$1	239	13	20	12.5873
eee::::	chr16:11642880-11643137(-)$1	257	93	100	13.4603
KKEEEEE	chr11:8017436-8017670(+)$1	234	44	51	13.1428
neeeeee	chr5:133996761-133997034(+)$1	273	243	250	12.4285
::::::J	chr1:241795664-241795921(-)$1	257	204	211	12.8253
:::::::	chr11:6635295-6635547(-)$1	252	40	47	16.9523
f"""eee	chr6:53140921-53141152(-)$1	231	87	94	12.7460
+++++++	chr12:49433747-49434057(-)$1	310	110	117	12.4285
::::::A	chr6:18225111-18225380(-)$1	269	52	59	12.7460
eennnnn	chr12:57106194-57106436(-)$1	242	12	19	12.7460
vvvvvvv	chr20:48568769-48569000(+)$1	231	74	81	16.9523
bnnnnnb	chr6:31603955-31604221(+)$1	266	164	171	12.4285
:::::dd	chr1:212534462-212534738(+)$1	276	104	111	16.9523
~~CCCDD	chr15:41593484-41593767(+)$1	283	264	271	16.9523
:dddduu	chr7:128410067-128410312(+)$1	245	166	173	16.9523
^^^^^^^	chr15:42450920-42451236(-)$1	316	104	111	13.4603
44a]ddd	chr20:49510841-49511111(-)$1	270	116	123	12.5079
f"""ddd	chr15:66792584-66792810(-)$1	226	85	92	12.5873
:::::::	chr7:137564986-137565274(-)$1	288	278	285	16.9523
ee^^^^^	chr12:53906319-53906584(-)$1	265	31	38	12.9047
}BB::::	chr6:27106114-27106359(-)$1	245	119	126	12.5079
hhhh:::	chr1:28527252-28527536(-)$1	284	35	42	16.9523
ftttttt	chr19:16213422-16213707(+)$1	285	92	99	16.9523
:::::dd	chr7:155101584-155101833(+)$1	249	99	106	12.5079
hhhh333	chr4:103717198-103717455(-)$1	257	70	77	16.9523
:::ffff	chr22:32353321-32353615(+)$1	294	27	34	12.7460
EKKBB:g	chr12:54744956-54745204(+)$1	248	44	51	12.9047
eee333e	chr19:41847702-41847974(-)$1	272	102	109	12.8253
::eeeee	chr22:19430870-19431157(-)$1	287	223	230	16.9523
_____II	chr16:47733503-47733790(+)$1	287	193	200	16.9523
goooooo	chr10:76980400-76980607(+)$1	207	39	46	12.9047
ggggg((	chr6:37142002-37142220(+)$1	218	93	100	12.9047
coooooo	chr5:179156617-179156829(+)$1	212	47	54	12.7460
eeeee:C	chr2:242291798-242292066(+)$1	268	224	231	12.9047
eeeee!!	chr1:111494903-111495156(-)$1	253	32	39	13.3809
eeeeccc	chr13:30085903-30086189(-)$1	286	21	28	13.3809
HHHHBB{	chr7:106800921-106801180(+)$1	259	86	93	12.5873
cc]dddd	chr16:68225171-68225479(+)$1	308	76	83	12.9047
^^^^^^^	chr15:41571640-41571885(+)$1	245	150	157	12.5079
::::GGG	chr8:101724489-101724706(-)$1	217	1	8	13.3809
occcbbf	chr1:52486233-52486472(-)$1	239	76	83	12.7460
dddJJJJ	chr1:228331582-228331850(+)$1	268	60	67	12.5873
(((dddd	chr12:124497853-124498152(+)$1	299	12	19	12.6666
ccbblll	chr12:46582228-46582491(-)$1	263	41	48	12.9047
c:::::g	chr12:54744909-54745156(+)$1	247	91	98	12.9047
ttttttt	chr3:183960202-183960499(-)$1	297	22	29	12.8253

#DB
((((...	chr6:150063453-150063807(-)$1	1	30	37	12.5079
.......	chr10:98281165-98281484(-)$1	1	106	113	13.4603
.(((((.	chr2:160604215-160604496(+)$1	1	79	86	13.4603
)))))))	chr5:95091202-95091513(+)$1	1	32	39	12.5079
.......	chr14:104378563-104378856(-)$1	1	229	236	13.4603
(((((((	chr6:71108866-71109121(+)$1	1	188	195	13.1428
)))))))	chr4:100869399-100869731(-)$1	1	227	234	12.5079
.)))...	chr3:150262129-150262382(-)$1	1	79	86	12.5873
.......	chr11:73965387-73965645(+)$1	1	35	42	16.9523
......)	chr4:57326634-57326855(+)$1	1	68	75	12.9047
(((((((	chr2:68401926-68402179(+)$1	1	26	33	13.4603
...))))	chr15:57580425-57580686(+)$1	1	92	99	12.8253
.......	chr2:70132003-70132260(+)$1	1	181	188	12.7460
((((...	chr4:73950865-73951112(-)$1	1	188	195	13.3809
((..(((	chr3:48786248-48786509(-)$1	1	109	116	12.6666
((((...	chr5:150648423-150648704(+)$1	1	6	13	12.6666
.))))))	chr1:113454928-113455171(-)$1	1	216	223	13.3809
(((((((	chr14:97010457-97010696(+)$1	1	13	20	12.5873
)))....	chr16:11642880-11643137(-)$1	1	93	100	13.4603
..(((((	chr11:8017436-8017670(+)$1	1	44	51	13.1428
.))))))	chr5:133996761-133997034(+)$1	1	243	250	12.4285
......)	chr1:241795664-241795921(-)$1	1	204	211	12.8253
.......	chr11:6635295-6635547(-)$1	1	40	47	16.9523
(...(((	chr6:53140921-53141152(-)$1	1	87	94	12.7460
.......	chr12:49433747-49434057(-)$1	1	110	117	12.4285
......(	chr6:18225111-18225380(-)$1	1	52	59	12.7460
((.....	chr12:57106194-57106436(-)$1	1	12	19	12.7460
.......	chr20:48568769-48569000(+)$1	1	74	81	16.9523
(.....)	chr6:31603955-31604221(+)$1	1	164	171	12.4285
.....((	chr1:212534462-212534738(+)$1	1	104	111	16.9523
..)))))	chr15:41593484-41593767(+)$1	1	264	271	16.9523
.((((..	chr7:128410067-128410312(+)$1	1	166	173	16.9523
.......	chr15:42450920-42451236(-)$1	1	104	111	13.4603
..).)))	chr20:49510841-49511111(-)$1	1	116	123	12.5079
(...(((	chr15:66792584-66792810(-)$1	1	85	92	12.5873
.......	chr7:137564986-137565274(-)$1	1	278	285	16.9523
((.....	chr12:53906319-53906584(-)$1	1	31	38	12.9047
.))....	chr6:27106114-27106359(-)$1	1	119	126	12.5079
))))...	chr1:28527252-28527536(-)$1	1	35	42	16.9523
(......	chr19:16213422-16213707(+)$1	1	92	99	16.9523
.....((	chr7:155101584-155101833(+)$1	1	99	106	12.5079
))))...	chr4:103717198-103717455(-)$1	1	70	77	16.9523
...((((	chr22:32353321-32353615(+)$1	1	27	34	12.7460
(..((.(	chr12:54744956-54745204(+)$1	1	44	51	12.9047
)))...)	chr19:41847702-41847974(-)$1	1	102	109	12.8253
..(((((	chr22:19430870-19431157(-)$1	1	223	230	16.9523
.....))	chr16:47733503-47733790(+)$1	1	193	200	16.9523
(......	chr10:76980400-76980607(+)$1	1	39	46	12.9047
(((((..	chr6:37142002-37142220(+)$1	1	93	100	12.9047
(......	chr5:179156617-179156829(+)$1	1	47	54	12.7460
))))).)	chr2:242291798-242292066(+)$1	1	224	231	12.9047
(((((..	chr1:111494903-111495156(-)$1	1	32	39	13.3809
(((((((	chr13:30085903-30086189(-)$1	1	21	28	13.3809
((((((.	chr7:106800921-106801180(+)$1	1	86	93	12.5873
)).))))	chr16:68225171-68225479(+)$1	1	76	83	12.9047
.......	chr15:41571640-41571885(+)$1	1	150	157	12.5079
....(((	chr8:101724489-101724706(-)$1	1	1	8	13.3809
.))))))	chr1:52486233-52486472(-)$1	1	76	83	12.7460
)))))))	chr1:228331582-228331850(+)$1	1	60	67	12.5873
...((((	chr12:124497853-124498152(+)$1	1	12	19	12.6666
((((...	chr12:46582228-46582491(-)$1	1	41	48	12.9047
).....(	chr12:54744909-54745156(+)$1	1	91	98	12.9047
.......	chr3:183960202-183960499(-)$1	1	22	29	12.8253

#PSSM
U : 0.77	u : 0.07	C : 0.04	G : 0.04	A : 0.04	
U : 0.82	u : 0.07	C : 0.04	G : 0.03	A : 0.01	
C : 0.71	A : 0.07	c : 0.07	U : 0.07	G : 0.03	a : 0.01	
U : 0.82	u : 0.09	C : 0.04	G : 0.01	A : 0.01	
C : 0.80	c : 0.09	U : 0.06	A : 0.01	G : 0.01	
U : 0.82	u : 0.06	A : 0.04	C : 0.03	c : 0.01	a : 0.01	
U : 0.84	u : 0.07	G : 0.03	A : 0.01	c : 0.01	C : 0.01	

#score	859.8253968253961
#seq	63
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_transcript_m2_run2.nuc.txt

#NT
UUAAACGGCUCUUUUCAGAGCCACC	chr6:26234340-26234569(-)$1	229	103	128	40.6666
CCCAAAGGCUCUUUUCAGAGCCCCC	chr6:26124687-26124937(+)$1	250	203	228	48.5833
ACCAAAGGCCCUUUUCAGGGCCGCC	chr6:26285248-26285477(-)$1	229	97	122	48.5000
CACCAAGGCCGUCACCAAGUACACC	chr6:27806772-27806986(+)$1	214	11	36	27.8333
CCCAAAGGCUCUUUUCAGAGCCCCC	chr6:26124816-26125063(+)$1	247	74	99	48.5833
CCCAAAGGCUCUUUUCAGAGCCCCC	chr6:26124779-26125000(+)$1	221	111	136	48.5833
CCAAAAGGCUCUUUUCAGAGCCACC	chr6:26055952-26056192(-)$1	240	199	224	48.8333
CACAAAGGCCGUCACCAAGUACACC	chr6:27861507-27861762(+)$1	255	77	102	31.1666
UAAAAAGGCCCUUUUUAGGGCCCCU	chr6:27107322-27107555(+)$1	233	104	129	37.9166
CCAAAAGGCUCUUUUCAGAGCCACC	chr6:26055868-26056072(-)$1	204	79	104	48.8333
CACAAAGGCCCUUUUAAGGGCCACC	chr11:118965522-118965771(-)$1	249	142	167	48.6666
CCAAAAGGCUCUUUUCAGAGCCACC	chr6:26055927-26056132(-)$1	205	139	164	48.8333
CAUAAAGGCUCUUUUCAGAGCCACC	chr1:228645004-228645246(-)$1	242	155	180	47.5000
CAAAAAGGUUCUUUUCAGAGCCACC	chr6:27805558-27805834(-)$1	276	150	175	43.4166
ACCAAAGGCCCUUUUCAGGGCCGCC	chr6:26285310-26285531(-)$1	221	151	176	48.5000
ACCAACGGCCCUUUUCAGGGCCACC	chr6:26188889-26189109(-)$1	220	145	170	47.0833
CCCAAAGGCUCUUUUAAGAGCCACC	chr1:149858918-149859185(-)$1	267	141	166	47.5833
CACAAAGGCCCUUUUAAGGGCCACC	chr11:118965498-118965722(-)$1	224	93	118	48.6666
CACCAAGGCCGUCACCAAGUACACC	chr6:27806744-27806965(+)$1	221	39	64	27.8333
CCCAAAGGCUCUUUUCAGAGCCACC	chr6:27834471-27834760(-)$1	289	164	189	51.0833
UAAAAAGGCCCUUUUUAGGGCCCCU	chr6:27107261-27107520(+)$1	259	165	190	37.9166
CACCAAGGCCGUCACCAAGUACACC	chr6:26123595-26123800(-)$1	205	12	37	27.8333
CCCAAAGGCCCUUUUCAGGGCCGCU	chr6:26104348-26104600(+)$1	252	190	215	46.7500
ACCAAAGGCCCUUUUCAGGGCCGCC	chr6:26022151-26022377(+)$1	226	100	125	48.5000
ACCAAAGGCCCUUUUCAGGGCCGCC	chr6:26285290-26285510(-)$1	220	130	155	48.5000
CCCAAAGGCUCUUUUCAGAGCCCCC	chr6:26124737-26124950(+)$1	213	153	178	48.5833
CACCAAGGCCGUCACCAAGUACACC	chr6:26158665-26158934(+)$1	269	76	101	27.8333
CCCAAAGGCUCUUUUCAGAGCCCCC	chr6:26124801-26125016(+)$1	215	89	114	48.5833
CCAAAAGGCUCUUUUCAGAGCCACC	chr6:26055872-26056103(-)$1	231	110	135	48.8333
UCCAAAGGCUCUUUUCAGGGCCACU	chr1:149814966-149815194(+)$1	228	89	114	46.3333
CCUAACGGCUCUUUUAAGAGCCACC	chr6:27100006-27100238(-)$1	232	117	142	40.6666
CACAAAGGCCGUCACCAAGUACACC	chr6:27861562-27861766(+)$1	204	22	47	31.1666
CCCAAAGGCUCUUUUCAGAGCCACU	chr1:149783334-149783576(-)$1	242	115	140	47.5833
CACAAAGGCCCUUUUAAGGGCCACC	chr11:118965445-118965677(-)$1	232	48	73	48.6666
CACCAAGGCCGUCACCAAGUACACC	chr6:27806765-27806972(+)$1	207	18	43	27.8333
ACAAAAGGCCCUUUUUAGGGCCCCC	chr6:27798852-27799106(-)$1	254	129	154	42.5000
CACCAAGGCCGUCACCAAGUACACC	chr6:27806642-27806870(+)$1	228	141	166	27.8333
UCCAAUGGCCCUUUUCAGGGCCGCC	chr6:26027025-26027257(-)$1	232	107	132	43.6666
ACCAACGGCCCUUUUCAGGGCCACC	chr6:26188839-26189089(-)$1	250	125	150	47.0833
CACCAAGGCCGUCACCAAGUACACC	chr6:26200104-26200315(+)$1	211	26	51	27.8333
CAUAAAGGCUCUUUUCAGAGCCACC	chr1:228644966-228645204(-)$1	238	113	138	47.5000
UUAAACGGCUCUUUUCAGAGCCACC	chr6:26234369-26234611(-)$1	242	145	170	40.6666
CACCAAGGCCGUCACCAAGUACACC	chr6:27114040-27114250(-)$1	210	17	42	27.8333
CCAAAAGGCUCUUUUCAGAGCCACC	chr6:26055917-26056127(-)$1	210	134	159	48.8333
AACAAAGGCUCUUUUCAGAGCCAUU	chr6:27115139-27115405(+)$1	266	179	204	40.5833
ACCAAAGGCCCUUUUCAGGGCCGCC	chr6:26285277-26285486(-)$1	209	106	131	48.5000
CCUAACGGCUCUUUUAAGAGCCACC	chr6:27100038-27100299(-)$1	261	178	203	40.6666
UAAAAAGGCCCUUUUUAGGGCCCCU	chr6:27107355-27107598(+)$1	243	71	96	37.9166
AUCAAAGGCCCUUUUCAGGGCCGCC	chr6:26205091-26205348(+)$1	257	131	156	46.5000
AUCAAAGGCCCUUUUCAGGGCCGCC	chr6:26205025-26205291(+)$1	266	197	222	46.5000
UCCAAAGGCUCUUUUCAGGGCCAUU	chr1:149821745-149821998(-)$1	253	108	133	41.6666
CACAAAGGCCCUUUUAAGGGCCACC	chr11:118965477-118965698(-)$1	221	69	94	48.6666
CCCAAAGGCUCUUUUCAGAGCCCCC	chr6:26124750-26124979(+)$1	229	140	165	48.5833
AUAAAAGGCCCUUUUCAGGGCCACC	chr6:27792098-27792318(+)$1	220	132	157	46.7500
UCUAAAGGCUCUUUUCAGAGCCACU	chr1:149784741-149784985(-)$1	244	181	206	42.3333
CACCAAGGCCGUCACCAAGUACACC	chr6:27114050-27114338(-)$1	288	105	130	27.8333
ACCAAAGGCCCUUUUCAGGGCCGCC	chr6:26022126-26022351(+)$1	225	125	150	48.5000
CACCAAGGCCGUCACCAAGUACACC	chr6:26200100-26200304(+)$1	204	30	55	27.8333
AGCAAAGGCUCUUUUCAGAGCCACC	chr6:26020995-26021279(+)$1	284	158	183	46.9166

#otherMatches

#Struct PSSM
H:::::ffffffmmmmffffff:::	chr6:27792118-27792355(+)$1	237	112	137	46.7500
cc"""==========!!cccbbppp	chr6:26234340-26234569(-)$1	229	103	128	40.6666
++++++ffffffmmmmffffff777	chr6:26124687-26124937(+)$1	250	203	228	48.5833
::::::ffffffmmmmffffff:::	chr6:26285248-26285477(-)$1	229	97	122	48.5000
eeeFFFFFFDDDD::::CCCLLLGG	chr6:27806772-27806986(+)$1	214	11	36	27.8333
::::::ffffffmmmmffffffbb[	chr6:26124816-26125063(+)$1	247	74	99	48.5833
++++++ffffffmmmmffffff777	chr6:26124779-26125000(+)$1	221	111	136	48.5833
::::::ffffffmmmmffffff::A	chr6:26055952-26056192(-)$1	240	199	224	48.8333
eee:::GGGGGGG:::::BB{DDDD	chr6:27861507-27861762(+)$1	255	77	102	31.1666
::::::ffffffmmmmffffff:::	chr6:27107322-27107555(+)$1	233	104	129	37.9166
DDD:::ffffffmmmmffffffbb[	chr6:26055868-26056072(-)$1	204	79	104	48.8333
))))))ffffffmmmmffffff>>>	chr11:118965522-118965771(-)$1	249	142	167	48.6666
::::::ffffffmmmmffffff:::	chr6:26055927-26056132(-)$1	205	139	164	48.8333
&&&&&&ffffffmmmmffffff555	chr1:228645004-228645246(-)$1	242	155	180	47.5000
c:::::ffffffmmmmffffff:::	chr6:27805558-27805834(-)$1	276	150	175	43.4166
::::::ffffffmmmmffffffbb"	chr6:26285310-26285531(-)$1	221	151	176	48.5000
::::::ffffffmmmmffffff::d	chr6:26188889-26189109(-)$1	220	145	170	47.0833
:==============[iiiiiiiii	chr1:149858918-149859185(-)$1	267	141	166	47.5833
))))))ffffffmmmmffffff>>>	chr11:118965498-118965722(-)$1	224	93	118	48.6666
d))))))))))dddd$$$$$bbmmm	chr6:27806744-27806965(+)$1	221	39	64	27.8333
::::::ffffffmmmmffffffBBD	chr6:27834471-27834760(-)$1	289	164	189	51.0833
::::::ffffffmmmmffffff:::	chr6:27107261-27107520(+)$1	259	165	190	37.9166
eeeCCC{BB{CCC{BBLLLCCC{BB	chr6:26123595-26123800(-)$1	205	12	37	27.8333
::::::ffffffmmmmffffff:cc	chr6:26104348-26104600(+)$1	252	190	215	46.7500
''''''ffffffmmmmffffff>>>	chr6:26022151-26022377(+)$1	226	100	125	48.5000
::::::ffffffmmmmffffffbb"	chr6:26285290-26285510(-)$1	220	130	155	48.5000
::::::ffffffmmmmffffff:::	chr6:26124737-26124950(+)$1	213	153	178	48.5833
ddd333ggggggg::::::::::::	chr6:26158665-26158934(+)$1	269	76	101	27.8333
++++++ffffffmmmmffffff777	chr6:26124801-26125016(+)$1	215	89	114	48.5833
::::::ffffffmmmmffffffbb[	chr6:26055872-26056103(-)$1	231	110	135	48.8333
mmeeeeeeeeeemmmmeeeeedddd	chr1:149814966-149815194(+)$1	228	89	114	46.3333
::::::ffffffmmmmffffff::c	chr6:27100006-27100238(-)$1	232	117	142	40.6666
cooooooccc]bb:EEEEE::::::	chr6:27861562-27861766(+)$1	204	22	47	31.1666
C:::::ffffffmmmmffffff:::	chr1:149783334-149783576(-)$1	242	115	140	47.5833
))))))ffffffmmmmffffff>>>	chr11:118965445-118965677(-)$1	232	48	73	48.6666
ffff22abbDDDD::::CCCLLLGG	chr6:27806765-27806972(+)$1	207	18	43	27.8333
::::::ffffffmmmmffffff:::	chr6:27798852-27799106(-)$1	254	129	154	42.5000
d))))))))))dddd$$$$$bbmmm	chr6:27806642-27806870(+)$1	228	141	166	27.8333
::::::ffffffmmmmffffffCCC	chr6:26027025-26027257(-)$1	232	107	132	43.6666
FFF:::ffffffmmmmffffff::d	chr6:26188839-26189089(-)$1	250	125	150	47.0833
cooooooccc]bb55555a]ddddH	chr6:26200104-26200315(+)$1	211	26	51	27.8333
::::::==========[cccttttt	chr1:228644966-228645204(-)$1	238	113	138	47.5000
::::::ffffffmmmmffffff:ee	chr6:26234369-26234611(-)$1	242	145	170	40.6666
cooooooccc]bb55555a]dddd2	chr6:27114040-27114250(-)$1	210	17	42	27.8333
::::::ffffffmmmmffffff:::	chr6:26055917-26056127(-)$1	210	134	159	48.8333
GGGGGGffffffmmmmffffff::d	chr6:27115139-27115405(+)$1	266	179	204	40.5833
::::::ffffffmmmmffffff:::	chr6:26285277-26285486(-)$1	209	106	131	48.5000
e:::::ffffffmmmmffffff:::	chr6:27100038-27100299(-)$1	261	178	203	40.6666
::::::ffffffmmmmffffff:::	chr6:27107355-27107598(+)$1	243	71	96	37.9166
::::::ffffffmmmmffffff:::	chr6:26205091-26205348(+)$1	257	131	156	46.5000
::::::ffffffmmmmffffff:::	chr6:26205025-26205291(+)$1	266	197	222	46.5000
::::::ffffffmmmmffffff:ff	chr1:149821745-149821998(-)$1	253	108	133	41.6666
))))))ffffffmmmmffffff>>>	chr11:118965477-118965698(-)$1	221	69	94	48.6666
++++++ffffffmmmmffffff777	chr6:26124750-26124979(+)$1	229	140	165	48.5833
::::::ffffffmmmmffffff:::	chr6:27792098-27792318(+)$1	220	132	157	46.7500
::::::ffffffmmmmffffffbb[	chr1:149784741-149784985(-)$1	244	181	206	42.3333
&&&&&eeeee))))))))))ddddd	chr6:27114050-27114338(-)$1	288	105	130	27.8333
''''''ffffffmmmmffffff>>>	chr6:26022126-26022351(+)$1	225	125	150	48.5000
cooooooccc]bb::::::::::HH	chr6:26200100-26200304(+)$1	204	30	55	27.8333
qqqqqqdddd4444ffffff22eee	chr6:26020995-26021279(+)$1	284	158	183	46.9166

#DB
(.....((((((....))))))...	chr6:27792118-27792355(+)$1	1	112	137	46.7500
((...((((((((((..(((((...	chr6:26234340-26234569(-)$1	1	103	128	40.6666
......((((((....))))))...	chr6:26124687-26124937(+)$1	1	203	228	48.5833
......((((((....))))))...	chr6:26285248-26285477(-)$1	1	97	122	48.5000
)))((((((((((....(((...((	chr6:27806772-27806986(+)$1	1	11	36	27.8333
......((((((....))))))((.	chr6:26124816-26125063(+)$1	1	74	99	48.5833
......((((((....))))))...	chr6:26124779-26125000(+)$1	1	111	136	48.5833
......((((((....))))))..)	chr6:26055952-26056192(-)$1	1	199	224	48.8333
)))...))))))).....((.((((	chr6:27861507-27861762(+)$1	1	77	102	31.1666
......((((((....))))))...	chr6:27107322-27107555(+)$1	1	104	129	37.9166
(((...((((((....))))))((.	chr6:26055868-26056072(-)$1	1	79	104	48.8333
......((((((....))))))...	chr11:118965522-118965771(-)$1	1	142	167	48.6666
......((((((....))))))...	chr6:26055927-26056132(-)$1	1	139	164	48.8333
......((((((....))))))...	chr1:228645004-228645246(-)$1	1	155	180	47.5000
).....((((((....))))))...	chr6:27805558-27805834(-)$1	1	150	175	43.4166
......((((((....))))))((.	chr6:26285310-26285531(-)$1	1	151	176	48.5000
......((((((....))))))..(	chr6:26188889-26189109(-)$1	1	145	170	47.0833
.((((((((((((((.(((((((((	chr1:149858918-149859185(-)$1	1	141	166	47.5833
......((((((....))))))...	chr11:118965498-118965722(-)$1	1	93	118	48.6666
(..........((((.....((...	chr6:27806744-27806965(+)$1	1	39	64	27.8333
......((((((....)))))))))	chr6:27834471-27834760(-)$1	1	164	189	51.0833
......((((((....))))))...	chr6:27107261-27107520(+)$1	1	165	190	37.9166
)))(((.((.(((.((...(((.((	chr6:26123595-26123800(-)$1	1	12	37	27.8333
......((((((....)))))).((	chr6:26104348-26104600(+)$1	1	190	215	46.7500
......((((((....))))))...	chr6:26022151-26022377(+)$1	1	100	125	48.5000
......((((((....))))))((.	chr6:26285290-26285510(-)$1	1	130	155	48.5000
......((((((....))))))...	chr6:26124737-26124950(+)$1	1	153	178	48.5833
)))...)))))))............	chr6:26158665-26158934(+)$1	1	76	101	27.8333
......((((((....))))))...	chr6:26124801-26125016(+)$1	1	89	114	48.5833
......((((((....))))))((.	chr6:26055872-26056103(-)$1	1	110	135	48.8333
..)))))(((((....)))))((((	chr1:149814966-149815194(+)$1	1	89	114	46.3333
......((((((....))))))..(	chr6:27100006-27100238(-)$1	1	117	142	40.6666
(......))).)).(((((......	chr6:27861562-27861766(+)$1	1	22	47	31.1666
(.....((((((....))))))...	chr1:149783334-149783576(-)$1	1	115	140	47.5833
......((((((....))))))...	chr11:118965445-118965677(-)$1	1	48	73	48.6666
))))..)))((((....(((...((	chr6:27806765-27806972(+)$1	1	18	43	27.8333
......((((((....))))))...	chr6:27798852-27799106(-)$1	1	129	154	42.5000
(..........((((.....((...	chr6:27806642-27806870(+)$1	1	141	166	27.8333
......((((((....))))))(((	chr6:26027025-26027257(-)$1	1	107	132	43.6666
(((...((((((....))))))..(	chr6:26188839-26189089(-)$1	1	125	150	47.0833
(......))).)).....).))))(	chr6:26200104-26200315(+)$1	1	26	51	27.8333
......((((((((((.(((.....	chr1:228644966-228645204(-)$1	1	113	138	47.5000
......((((((....)))))).((	chr6:26234369-26234611(-)$1	1	145	170	40.6666
(......))).)).....).)))).	chr6:27114040-27114250(-)$1	1	17	42	27.8333
......((((((....))))))...	chr6:26055917-26056127(-)$1	1	134	159	48.8333
((((((((((((....))))))..(	chr6:27115139-27115405(+)$1	1	179	204	40.5833
......((((((....))))))...	chr6:26285277-26285486(-)$1	1	106	131	48.5000
).....((((((....))))))...	chr6:27100038-27100299(-)$1	1	178	203	40.6666
......((((((....))))))...	chr6:27107355-27107598(+)$1	1	71	96	37.9166
......((((((....))))))...	chr6:26205091-26205348(+)$1	1	131	156	46.5000
......((((((....))))))...	chr6:26205025-26205291(+)$1	1	197	222	46.5000
......((((((....)))))).((	chr1:149821745-149821998(-)$1	1	108	133	41.6666
......((((((....))))))...	chr11:118965477-118965698(-)$1	1	69	94	48.6666
......((((((....))))))...	chr6:26124750-26124979(+)$1	1	140	165	48.5833
......((((((....))))))...	chr6:27792098-27792318(+)$1	1	132	157	46.7500
......((((((....))))))((.	chr1:149784741-149784985(-)$1	1	181	206	42.3333
.....(((((..........(((((	chr6:27114050-27114338(-)$1	1	105	130	27.8333
......((((((....))))))...	chr6:26022126-26022351(+)$1	1	125	150	48.5000
(......))).))..........))	chr6:26200100-26200304(+)$1	1	30	55	27.8333
......))))....))))))..)))	chr6:26020995-26021279(+)$1	1	158	183	46.9166

#PSSM
C : 0.60	A : 0.24	U : 0.15	
C : 0.49	A : 0.38	U : 0.09	G : 0.01	
C : 0.68	A : 0.23	U : 0.08	
A : 0.83	C : 0.16	
A : 1.00	
A : 0.88	C : 0.09	U : 0.01	
G : 1.00	
G : 1.00	
C : 0.98	U : 0.01	
C : 0.56	U : 0.43	
C : 0.80	G : 0.19	
U : 1.00	
U : 0.80	C : 0.19	
U : 0.80	A : 0.19	
U : 0.80	C : 0.19	
C : 0.81	A : 0.11	U : 0.06	
A : 1.00	
G : 0.80	A : 0.19	
G : 0.60	A : 0.39	
G : 0.80	U : 0.19	
C : 0.80	A : 0.19	
C : 1.00	
A : 0.66	C : 0.16	G : 0.16	
C : 0.96	U : 0.03	
C : 0.85	U : 0.15	

#score	2554.5000000000055
#seq	60
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_transcript_m2_run2.nuc.txt

#NT
gag	chr8:91269600-91269874(+)$1	274	262	265	9.0000
GAG	chr3:37365765-37366020(+)$1	255	32	35	9.0000
GAG	chr16:8997030-8997358(-)$1	328	5	8	9.0000
GAG	chr11:65268142-65268351(+)$1	209	10	13	9.0000
GAG	chr1:171526286-171526511(+)$1	225	13	16	9.0000
gag	chr12:21789969-21790229(-)$1	260	17	20	9.0000
GAG	chr2:168740854-168741139(-)$1	285	24	27	9.0000
GAG	chr5:72286241-72286543(+)$1	302	103	106	9.0000
GAG	chr5:79946944-79947198(-)$1	254	6	9	9.0000
GAG	chr7:77378758-77379101(+)$1	343	233	236	9.0000
GAG	chr17:62498186-62498441(-)$1	255	16	19	9.0000
GAG	chr5:10264737-10265057(+)$1	320	141	144	9.0000
gag	chr10:18854605-18854859(-)$1	254	21	24	9.0000
GAG	chrX:70586278-70586576(+)$1	298	28	31	9.0000
gag	chr16:47328272-47328575(-)$1	303	182	185	9.0000
GAG	chr9:127998544-127998798(-)$1	254	36	39	9.0000
GAG	chr17:34171000-34171235(+)$1	235	86	89	9.0000
GAG	chr11:3023120-3023367(-)$1	247	2	5	9.0000
GAG	chr1:165723364-165723613(-)$1	249	1	4	9.0000
GAG	chr1:220195597-220195855(-)$1	258	0	3	9.0000
GAG	chr11:11964381-11964703(+)$1	322	187	190	9.0000
GAG	chr4:769614-769913(-)$1	299	7	10	9.0000
gag	chr2:168748006-168748267(-)$1	261	56	59	9.0000
GAG	chr8:30938619-30938886(+)$1	267	53	56	9.0000
GAG	chr5:134263344-134263581(+)$1	237	68	71	9.0000
GAG	chrM:3087-3289(+)$1	202	50	53	9.0000
GAG	chr18:39561221-39561546(+)$1	325	225	228	9.0000
GAG	chr1:68150869-68151163(+)$1	294	37	40	9.0000
GAG	chr21:34921813-34922083(+)$1	270	132	135	9.0000
GAG	chr2:238672616-238672920(+)$1	304	47	50	9.0000
gag	chr3:196642711-196643025(+)$1	314	244	247	9.0000
gag	chr7:119433319-119433575(-)$1	256	184	187	9.0000
GAG	chr7:91631594-91631847(+)$1	253	115	118	9.0000
GAG	chrM:13266-13496(+)$1	230	149	152	9.0000
GAG	chr5:134260124-134260399(+)$1	275	9	12	9.0000
GAG	chr12:6687155-6687403(-)$1	248	99	102	9.0000
GAG	chr1:220152740-220153016(-)$1	276	60	63	9.0000
GAG	chrM:12653-12861(+)$1	208	114	117	9.0000
GAG	chr11:62298842-62299120(-)$1	278	43	46	9.0000
GAG	chrM:14203-14424(-)$1	221	8	11	9.0000
GAG	chr12:93893089-93893386(+)$1	297	3	6	9.0000
gag	chr7:120896982-120897244(+)$1	262	8	11	9.0000
GAG	chr12:122992666-122992913(-)$1	247	38	41	9.0000
GAG	chrM:14224-14452(-)$1	228	3	6	9.0000
gag	chr8:91266411-91266679(+)$1	268	32	35	9.0000
GAG	chrM:9885-10090(+)$1	205	97	100	9.0000
gag	chr8:91273420-91273704(+)$1	284	64	67	9.0000
GAG	chr17:29195250-29195531(+)$1	281	162	165	9.0000
GAG	chr21:40571099-40571412(-)$1	313	12	15	9.0000
GAG	chr7:91624922-91625176(+)$1	254	14	17	9.0000
GAG	chrM:14367-14602(-)$1	235	70	73	9.0000
GAG	chr14:61278600-61278930(+)$1	330	37	40	9.0000
gag	chr6:147618935-147619258(+)$1	323	75	78	9.0000
gag	chr16:20687273-20687649(+)$1	376	14	17	9.0000
gag	chr11:65267373-65267586(+)$1	213	27	30	9.0000
GAG	chr5:33467644-33467905(+)$1	261	34	37	9.0000
GAG	chr7:91623834-91624063(+)$1	229	131	134	9.0000
GAG	chr8:91283668-91283972(+)$1	304	16	19	9.0000
GAG	chr5:70806029-70806277(+)$1	248	14	17	9.0000
GAG	chrM:12661-12887(+)$1	226	106	109	9.0000
GAG	chrM:14416-14644(-)$1	228	112	115	9.0000
GAG	chr12:122995555-122995760(-)$1	205	57	60	9.0000
GAG	chr7:26233155-26233376(-)$1	221	0	3	9.0000
GAG	chr15:44063202-44063416(+)$1	214	140	143	9.0000
GAG	chrM:9856-10085(+)$1	229	126	129	9.0000
gag	chr10:18854936-18855219(-)$1	283	7	10	9.0000
GAG	chr12:6692404-6692644(-)$1	240	11	14	9.0000
GAG	chr11:62293662-62293889(-)$1	227	59	62	9.0000
gag	chr15:20625771-20626062(-)$1	291	75	78	9.0000
GAG	chr11:2672724-2672996(-)$1	272	5	8	9.0000
gag	chr8:91384981-91385265(+)$1	284	9	12	9.0000
gag	chr9:134080186-134080463(+)$1	277	8	11	9.0000
GAG	chr2:55771958-55772236(+)$1	278	11	14	9.0000
GAG	chr5:134260964-134261240(+)$1	276	13	16	9.0000
GAG	chr7:26233143-26233355(-)$1	212	53	56	9.0000
GAG	chrM:9802-10037(+)$1	235	180	183	9.0000
GAG	chr12:46320163-46320474(-)$1	311	120	123	9.0000
gag	chr7:119433270-119433519(-)$1	249	128	131	9.0000
GAG	chrM:12784-12987(+)$1	203	34	37	9.0000
GAG	chr4:68383826-68384144(-)$1	318	24	27	9.0000
GAG	chr11:65191179-65191399(+)$1	220	61	64	9.0000
GAG	chr10:70098796-70099029(+)$1	233	106	109	9.0000
GAG	chr10:17279196-17279548(+)$1	352	176	179	9.0000
GAG	chr7:91708343-91708627(+)$1	284	108	111	9.0000
GAG	chr11:65268151-65268357(+)$1	206	1	4	9.0000
GAG	chr11:62298293-62298533(-)$1	240	10	13	9.0000
GAG	chr7:26232052-26232297(-)$1	245	115	118	9.0000
GAG	chr3:169700848-169701142(+)$1	294	100	103	9.0000
gag	chr18:39556632-39556968(+)$1	336	57	60	9.0000
GAG	chrM:14452-14671(-)$1	219	20	23	9.0000
GAG	chr8:53569110-53569406(-)$1	296	21	24	9.0000
GAG	chr2:190339931-190340257(+)$1	326	120	123	9.0000
gag	chr10:18856331-18856616(-)$1	285	29	32	9.0000
GAG	chr8:56986301-56986544(-)$1	243	91	94	9.0000

#otherMatches

#Struct PSSM
fff	chr7:102545765-102546070(-)$1	305	151	154	9.0000
:::	chr8:91269600-91269874(+)$1	274	262	265	9.0000
ddB	chr3:37365765-37366020(+)$1	255	32	35	9.0000
:::	chr16:8997030-8997358(-)$1	328	5	8	9.0000
FF:	chr11:65268142-65268351(+)$1	209	10	13	9.0000
:::	chr1:171526286-171526511(+)$1	225	13	16	9.0000
eee	chr12:21789969-21790229(-)$1	260	17	20	9.0000
ddd	chr2:168740854-168741139(-)$1	285	24	27	9.0000
999	chr5:72286241-72286543(+)$1	302	103	106	9.0000
ELL	chr5:79946944-79947198(-)$1	254	6	9	9.0000
::d	chr7:77378758-77379101(+)$1	343	233	236	9.0000
ggg	chr17:62498186-62498441(-)$1	255	16	19	9.0000
:::	chr5:10264737-10265057(+)$1	320	141	144	9.0000
:::	chr10:18854605-18854859(-)$1	254	21	24	9.0000
eee	chrX:70586278-70586576(+)$1	298	28	31	9.0000
lll	chr16:47328272-47328575(-)$1	303	182	185	9.0000
eee	chr9:127998544-127998798(-)$1	254	36	39	9.0000
fff	chr17:34171000-34171235(+)$1	235	86	89	9.0000
::C	chr11:3023120-3023367(-)$1	247	2	5	9.0000
EEE	chr1:165723364-165723613(-)$1	249	1	4	9.0000
:::	chr1:220195597-220195855(-)$1	258	0	3	9.0000
GGG	chr11:11964381-11964703(+)$1	322	187	190	9.0000
{EE	chr4:769614-769913(-)$1	299	7	10	9.0000
ee"	chr2:168748006-168748267(-)$1	261	56	59	9.0000
!!b	chr8:30938619-30938886(+)$1	267	53	56	9.0000
bb]	chr5:134263344-134263581(+)$1	237	68	71	9.0000
+++	chrM:3087-3289(+)$1	202	50	53	9.0000
666	chr18:39561221-39561546(+)$1	325	225	228	9.0000
f]e	chr1:68150869-68151163(+)$1	294	37	40	9.0000
d]c	chr21:34921813-34922083(+)$1	270	132	135	9.0000
fff	chr2:238672616-238672920(+)$1	304	47	50	9.0000
ccc	chr3:196642711-196643025(+)$1	314	244	247	9.0000
:::	chr7:119433319-119433575(-)$1	256	184	187	9.0000
ddd	chr7:91631594-91631847(+)$1	253	115	118	9.0000
eee	chrM:13266-13496(+)$1	230	149	152	9.0000
:a[	chr5:134260124-134260399(+)$1	275	9	12	9.0000
dd#	chr12:6687155-6687403(-)$1	248	99	102	9.0000
ggg	chr1:220152740-220153016(-)$1	276	60	63	9.0000
==!	chrM:12653-12861(+)$1	208	114	117	9.0000
mmm	chr11:62298842-62299120(-)$1	278	43	46	9.0000
:::	chrM:14203-14424(-)$1	221	8	11	9.0000
::C	chr12:93893089-93893386(+)$1	297	3	6	9.0000
ddd	chr7:120896982-120897244(+)$1	262	8	11	9.0000
b[e	chr12:122992666-122992913(-)$1	247	38	41	9.0000
::E	chrM:14224-14452(-)$1	228	3	6	9.0000
22d	chr8:91266411-91266679(+)$1	268	32	35	9.0000
E}D	chrM:9885-10090(+)$1	205	97	100	9.0000
iii	chr8:91273420-91273704(+)$1	284	64	67	9.0000
===	chr17:29195250-29195531(+)$1	281	162	165	9.0000
nnn	chr21:40571099-40571412(-)$1	313	12	15	9.0000
JJ:	chr7:91624922-91625176(+)$1	254	14	17	9.0000
iii	chrM:14367-14602(-)$1	235	70	73	9.0000
GGG	chr14:61278600-61278930(+)$1	330	37	40	9.0000
CCC	chr6:147618935-147619258(+)$1	323	75	78	9.0000
eee	chr16:20687273-20687649(+)$1	376	14	17	9.0000
d$$	chr11:65267373-65267586(+)$1	213	27	30	9.0000
ttt	chr5:33467644-33467905(+)$1	261	34	37	9.0000
rrg	chr7:91623834-91624063(+)$1	229	131	134	9.0000
BB{	chr8:91283668-91283972(+)$1	304	16	19	9.0000
qqq	chr5:70806029-70806277(+)$1	248	14	17	9.0000
==!	chrM:12661-12887(+)$1	226	106	109	9.0000
iii	chrM:14416-14644(-)$1	228	112	115	9.0000
+++	chr12:122995555-122995760(-)$1	205	57	60	9.0000
:::	chr7:26233155-26233376(-)$1	221	0	3	9.0000
cc2	chr15:44063202-44063416(+)$1	214	140	143	9.0000
d]c	chrM:9856-10085(+)$1	229	126	129	9.0000
:::	chr10:18854936-18855219(-)$1	283	7	10	9.0000
B{E	chr12:6692404-6692644(-)$1	240	11	14	9.0000
!!d	chr11:62293662-62293889(-)$1	227	59	62	9.0000
ccc	chr15:20625771-20626062(-)$1	291	75	78	9.0000
FFF	chr11:2672724-2672996(-)$1	272	5	8	9.0000
e[b	chr8:91384981-91385265(+)$1	284	9	12	9.0000
:::	chr9:134080186-134080463(+)$1	277	8	11	9.0000
:::	chr2:55771958-55772236(+)$1	278	11	14	9.0000
bb]	chr5:134260964-134261240(+)$1	276	13	16	9.0000
ldd	chr7:26233143-26233355(-)$1	212	53	56	9.0000
d]c	chrM:9802-10037(+)$1	235	180	183	9.0000
55d	chr12:46320163-46320474(-)$1	311	120	123	9.0000
:::	chr7:119433270-119433519(-)$1	249	128	131	9.0000
'''	chrM:12784-12987(+)$1	203	34	37	9.0000
ccc	chr4:68383826-68384144(-)$1	318	24	27	9.0000
mmm	chr11:65191179-65191399(+)$1	220	61	64	9.0000
fff	chr10:70098796-70099029(+)$1	233	106	109	9.0000
B==	chr10:17279196-17279548(+)$1	352	176	179	9.0000
a]b	chr7:91708343-91708627(+)$1	284	108	111	9.0000
:::	chr11:65268151-65268357(+)$1	206	1	4	9.0000
BKK	chr11:62298293-62298533(-)$1	240	10	13	9.0000
::e	chr7:26232052-26232297(-)$1	245	115	118	9.0000
ddd	chr3:169700848-169701142(+)$1	294	100	103	9.0000
ggg	chr18:39556632-39556968(+)$1	336	57	60	9.0000
ggg	chrM:14452-14671(-)$1	219	20	23	9.0000
:CC	chr8:53569110-53569406(-)$1	296	21	24	9.0000
C::	chr2:190339931-190340257(+)$1	326	120	123	9.0000
:::	chr10:18856331-18856616(-)$1	285	29	32	9.0000
[cc	chr8:56986301-56986544(-)$1	243	91	94	9.0000

#DB
(((	chr7:102545765-102546070(-)$1	1	151	154	9.0000
...	chr8:91269600-91269874(+)$1	1	262	265	9.0000
))(	chr3:37365765-37366020(+)$1	1	32	35	9.0000
...	chr16:8997030-8997358(-)$1	1	5	8	9.0000
((.	chr11:65268142-65268351(+)$1	1	10	13	9.0000
...	chr1:171526286-171526511(+)$1	1	13	16	9.0000
(((	chr12:21789969-21790229(-)$1	1	17	20	9.0000
(((	chr2:168740854-168741139(-)$1	1	24	27	9.0000
...	chr5:72286241-72286543(+)$1	1	103	106	9.0000
(..	chr5:79946944-79947198(-)$1	1	6	9	9.0000
..(	chr7:77378758-77379101(+)$1	1	233	236	9.0000
(((	chr17:62498186-62498441(-)$1	1	16	19	9.0000
...	chr5:10264737-10265057(+)$1	1	141	144	9.0000
...	chr10:18854605-18854859(-)$1	1	21	24	9.0000
(((	chrX:70586278-70586576(+)$1	1	28	31	9.0000
...	chr16:47328272-47328575(-)$1	1	182	185	9.0000
(((	chr9:127998544-127998798(-)$1	1	36	39	9.0000
)))	chr17:34171000-34171235(+)$1	1	86	89	9.0000
..(	chr11:3023120-3023367(-)$1	1	2	5	9.0000
(((	chr1:165723364-165723613(-)$1	1	1	4	9.0000
...	chr1:220195597-220195855(-)$1	1	0	3	9.0000
)))	chr11:11964381-11964703(+)$1	1	187	190	9.0000
.((	chr4:769614-769913(-)$1	1	7	10	9.0000
((.	chr2:168748006-168748267(-)$1	1	56	59	9.0000
..(	chr8:30938619-30938886(+)$1	1	53	56	9.0000
)).	chr5:134263344-134263581(+)$1	1	68	71	9.0000
...	chrM:3087-3289(+)$1	1	50	53	9.0000
...	chr18:39561221-39561546(+)$1	1	225	228	9.0000
).)	chr1:68150869-68151163(+)$1	1	37	40	9.0000
).)	chr21:34921813-34922083(+)$1	1	132	135	9.0000
)))	chr2:238672616-238672920(+)$1	1	47	50	9.0000
)))	chr3:196642711-196643025(+)$1	1	244	247	9.0000
...	chr7:119433319-119433575(-)$1	1	184	187	9.0000
(((	chr7:91631594-91631847(+)$1	1	115	118	9.0000
(((	chrM:13266-13496(+)$1	1	149	152	9.0000
.(.	chr5:134260124-134260399(+)$1	1	9	12	9.0000
((.	chr12:6687155-6687403(-)$1	1	99	102	9.0000
)))	chr1:220152740-220153016(-)$1	1	60	63	9.0000
((.	chrM:12653-12861(+)$1	1	114	117	9.0000
...	chr11:62298842-62299120(-)$1	1	43	46	9.0000
...	chrM:14203-14424(-)$1	1	8	11	9.0000
..(	chr12:93893089-93893386(+)$1	1	3	6	9.0000
(((	chr7:120896982-120897244(+)$1	1	8	11	9.0000
(.(	chr12:122992666-122992913(-)$1	1	38	41	9.0000
..(	chrM:14224-14452(-)$1	1	3	6	9.0000
..)	chr8:91266411-91266679(+)$1	1	32	35	9.0000
).)	chrM:9885-10090(+)$1	1	97	100	9.0000
)))	chr8:91273420-91273704(+)$1	1	64	67	9.0000
(((	chr17:29195250-29195531(+)$1	1	162	165	9.0000
...	chr21:40571099-40571412(-)$1	1	12	15	9.0000
((.	chr7:91624922-91625176(+)$1	1	14	17	9.0000
(((	chrM:14367-14602(-)$1	1	70	73	9.0000
(((	chr14:61278600-61278930(+)$1	1	37	40	9.0000
(((	chr6:147618935-147619258(+)$1	1	75	78	9.0000
(((	chr16:20687273-20687649(+)$1	1	14	17	9.0000
(..	chr11:65267373-65267586(+)$1	1	27	30	9.0000
...	chr5:33467644-33467905(+)$1	1	34	37	9.0000
..)	chr7:91623834-91624063(+)$1	1	131	134	9.0000
((.	chr8:91283668-91283972(+)$1	1	16	19	9.0000
...	chr5:70806029-70806277(+)$1	1	14	17	9.0000
((.	chrM:12661-12887(+)$1	1	106	109	9.0000
(((	chrM:14416-14644(-)$1	1	112	115	9.0000
...	chr12:122995555-122995760(-)$1	1	57	60	9.0000
...	chr7:26233155-26233376(-)$1	1	0	3	9.0000
)).	chr15:44063202-44063416(+)$1	1	140	143	9.0000
).)	chrM:9856-10085(+)$1	1	126	129	9.0000
...	chr10:18854936-18855219(-)$1	1	7	10	9.0000
(.(	chr12:6692404-6692644(-)$1	1	11	14	9.0000
..(	chr11:62293662-62293889(-)$1	1	59	62	9.0000
)))	chr15:20625771-20626062(-)$1	1	75	78	9.0000
(((	chr11:2672724-2672996(-)$1	1	5	8	9.0000
(.(	chr8:91384981-91385265(+)$1	1	9	12	9.0000
...	chr9:134080186-134080463(+)$1	1	8	11	9.0000
...	chr2:55771958-55772236(+)$1	1	11	14	9.0000
)).	chr5:134260964-134261240(+)$1	1	13	16	9.0000
.))	chr7:26233143-26233355(-)$1	1	53	56	9.0000
).)	chrM:9802-10037(+)$1	1	180	183	9.0000
..)	chr12:46320163-46320474(-)$1	1	120	123	9.0000
...	chr7:119433270-119433519(-)$1	1	128	131	9.0000
...	chrM:12784-12987(+)$1	1	34	37	9.0000
(((	chr4:68383826-68384144(-)$1	1	24	27	9.0000
...	chr11:65191179-65191399(+)$1	1	61	64	9.0000
(((	chr10:70098796-70099029(+)$1	1	106	109	9.0000
(((	chr10:17279196-17279548(+)$1	1	176	179	9.0000
).)	chr7:91708343-91708627(+)$1	1	108	111	9.0000
...	chr11:65268151-65268357(+)$1	1	1	4	9.0000
(..	chr11:62298293-62298533(-)$1	1	10	13	9.0000
..(	chr7:26232052-26232297(-)$1	1	115	118	9.0000
(((	chr3:169700848-169701142(+)$1	1	100	103	9.0000
)))	chr18:39556632-39556968(+)$1	1	57	60	9.0000
)))	chrM:14452-14671(-)$1	1	20	23	9.0000
.((	chr8:53569110-53569406(-)$1	1	21	24	9.0000
(..	chr2:190339931-190340257(+)$1	1	120	123	9.0000
...	chr10:18856331-18856616(-)$1	1	29	32	9.0000
.((	chr8:56986301-56986544(-)$1	1	91	94	9.0000

#PSSM
G : 0.77	g : 0.22	
A : 0.77	a : 0.22	
G : 0.77	g : 0.22	

#score	855.0000000000001
#seq	95
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_UTR_m3_run1.nuc.txt

#NT
CAG	chrX:153581979-153582189(-)$1	210	57	60	8.9999
CAG	chrX:153582948-153583158(-)$1	210	53	56	8.9999
CAG	chr15:60741107-60741480(-)$1	373	21	24	8.9999
CAG	chr1:19444232-19444488(-)$1	256	31	34	8.9999
CAG	chr5:137902589-137902887(-)$1	298	32	35	8.9999
CAG	chrX:153580574-153580850(-)$1	276	56	59	8.9999
CAG	chrX:153580152-153580356(-)$1	204	31	34	8.9999
CAG	chrX:153583193-153583464(-)$1	271	200	203	8.9999
CAG	chrX:153578417-153578672(-)$1	255	74	77	8.9999
CAG	chr17:57738759-57738986(+)$1	227	90	93	8.9999
CAG	chrX:153590511-153590744(-)$1	233	55	58	8.9999
CAG	chr3:184046620-184046874(+)$1	254	49	52	8.9999
CAG	chrX:153579868-153580121(-)$1	253	103	106	8.9999
CAG	chr3:184043167-184043412(+)$1	245	20	23	8.9999
CAG	chr1:117910660-117911141(+)$1	481	155	158	8.9999
CAG	chr11:61083655-61083945(-)$1	290	1	4	8.9999
CAG	chrX:153580236-153580476(-)$1	240	53	56	8.9999
CAG	chrX:153588805-153589040(-)$1	235	208	211	8.9999
CAG	chr11:122930509-122930758(-)$1	249	122	125	8.9999
CAG	chrX:153588154-153588366(-)$1	212	5	8	8.9999
CAG	chr12:6716408-6716648(-)$1	240	158	161	8.9999
CAG	chr5:154173643-154173903(+)$1	260	116	119	8.9999
CAG	chrX:153579281-153579494(-)$1	213	106	109	8.9999
CAG	chrX:153585717-153585986(-)$1	269	165	168	8.9999
CAG	chr3:184052546-184052803(+)$1	257	63	66	8.9999
CAG	chrX:153588103-153588322(-)$1	219	7	10	8.9999
CAG	chrX:153583150-153583381(-)$1	231	117	120	8.9999
CAG	chr3:184041942-184042168(+)$1	226	43	46	8.9999
CAG	chr6:37142744-37142987(+)$1	243	187	190	8.9999
CAG	chr3:184045616-184045869(+)$1	253	115	118	8.9999
CAG	chr17:80426592-80426872(+)$1	280	11	14	8.9999
CAG	chrX:153587753-153587968(-)$1	215	0	3	8.9999
CAG	chr1:19438936-19439184(-)$1	248	46	49	8.9999
CAG	chrX:153588477-153588699(-)$1	222	103	106	8.9999
CAG	chr9:95012380-95012664(-)$1	284	90	93	8.9999
CAG	chr3:184045563-184045816(+)$1	253	168	171	8.9999
CAG	chrX:153586712-153586914(-)$1	202	42	45	8.9999
CAG	chr1:52260081-52260381(-)$1	300	96	99	8.9999
CAG	chr17:29663653-29663992(+)$1	339	141	144	8.9999
CAG	chr17:29657272-29657612(+)$1	340	43	46	8.9999
CAG	chr2:61715622-61715875(-)$1	253	5	8	8.9999
CAG	chr11:61077675-61077894(-)$1	219	12	15	8.9999
CAG	chrX:153582537-153582758(-)$1	221	80	83	8.9999
CAG	chr2:54147933-54148285(-)$1	352	86	89	8.9999
cag	chr17:57697321-57697527(+)$1	206	69	72	8.9999
CAG	chrX:153582746-153582951(-)$1	205	3	6	8.9999
CAG	chrX:153587374-153587592(-)$1	218	40	43	8.9999
CAG	chr3:184040918-184041129(+)$1	211	13	16	8.9999
CAG	chr5:154172183-154172416(+)$1	233	16	19	8.9999
CAG	chrX:153587896-153588114(-)$1	218	143	146	8.9999
CAG	chrX:153590835-153591046(-)$1	211	73	76	8.9999
CAG	chr3:184044211-184044513(+)$1	302	59	62	8.9999
CAG	chr3:184041093-184041314(+)$1	221	126	129	8.9999
CAG	chr17:57738786-57739067(+)$1	281	63	66	8.9999
CAG	chr9:95027191-95027439(-)$1	248	121	124	8.9999
CAG	chr17:57741133-57741396(+)$1	263	66	69	8.9999
CAG	chr16:8992287-8992597(-)$1	310	14	17	8.9999
CAG	chr19:41807339-41807671(+)$1	332	117	120	8.9999
CAG	chr8:48874511-48874773(+)$1	262	150	153	8.9999
CAG	chr3:184043002-184043261(+)$1	259	185	188	8.9999
CAG	chrX:41055788-41056054(+)$1	266	60	63	8.9999
CAG	chr2:48032672-48032939(+)$1	267	121	124	8.9999
CAG	chrX:153587646-153587868(-)$1	222	175	178	8.9999
CAG	chrX:153578299-153578520(-)$1	221	155	158	8.9999
CAG	chrX:153587804-153588048(-)$1	244	77	80	8.9999
CAG	chr9:94985535-94985798(-)$1	263	146	149	8.9999
CAG	chr3:184041917-184042142(+)$1	225	68	71	8.9999
CAG	chrX:153585809-153586063(-)$1	254	242	245	8.9999
CAG	chr9:95040426-95040645(-)$1	219	26	29	8.9999
CAG	chr17:57728474-57728744(+)$1	270	128	131	8.9999
CAG	chr5:140956941-140957175(-)$1	234	96	99	8.9999
CAG	chrX:153590576-153590799(-)$1	223	110	113	8.9999
CAG	chr17:45734128-45734382(+)$1	254	208	211	8.9999
CAG	chrX:153585786-153586009(-)$1	223	188	191	8.9999
CAG	chrX:153587318-153587574(-)$1	256	22	25	8.9999
CAG	chr3:184039073-184039338(+)$1	265	70	73	8.9999
CAG	chr17:80443281-80443579(+)$1	298	153	156	8.9999
CAG	chrX:153586714-153586934(-)$1	220	62	65	8.9999
CAG	chr2:61719072-61719315(-)$1	243	134	137	8.9999
CAG	chr3:184044940-184045270(+)$1	330	192	195	8.9999
CAG	chr3:184040552-184040830(+)$1	278	14	17	8.9999
CAG	chr5:154173579-154173843(+)$1	264	23	26	8.9999
CAG	chrX:153580650-153580909(-)$1	259	32	35	8.9999
CAG	chr18:29437507-29437935(-)$1	428	64	67	8.9999
CAG	chrX:153586614-153586823(-)$1	209	97	100	8.9999
CAG	chr16:8998978-8999283(-)$1	305	54	57	8.9999

#otherMatches

#Struct PSSM
::c	chr7:158457196-158457450(-)$1	254	119	122	8.9999
[ee	chrX:153581979-153582189(-)$1	210	57	60	8.9999
:ee	chrX:153582948-153583158(-)$1	210	53	56	8.9999
DDD	chr15:60741107-60741480(-)$1	373	21	24	8.9999
:::	chr1:19444232-19444488(-)$1	256	31	34	8.9999
fff	chr5:137902589-137902887(-)$1	298	32	35	8.9999
a[c	chrX:153580574-153580850(-)$1	276	56	59	8.9999
iii	chrX:153580152-153580356(-)$1	204	31	34	8.9999
ppp	chrX:153583193-153583464(-)$1	271	200	203	8.9999
hhh	chrX:153578417-153578672(-)$1	255	74	77	8.9999
d:D	chr17:57738759-57738986(+)$1	227	90	93	8.9999
e[b	chrX:153590511-153590744(-)$1	233	55	58	8.9999
cc]	chr3:184046620-184046874(+)$1	254	49	52	8.9999
:FF	chrX:153579868-153580121(-)$1	253	103	106	8.9999
GCC	chr3:184043167-184043412(+)$1	245	20	23	8.9999
:ff	chr1:117910660-117911141(+)$1	481	155	158	8.9999
:GG	chr11:61083655-61083945(-)$1	290	1	4	8.9999
ggg	chrX:153580236-153580476(-)$1	240	53	56	8.9999
e22	chrX:153588805-153589040(-)$1	235	208	211	8.9999
FFF	chr11:122930509-122930758(-)$1	249	122	125	8.9999
[ee	chrX:153588154-153588366(-)$1	212	5	8	8.9999
fff	chr12:6716408-6716648(-)$1	240	158	161	8.9999
BFF	chr5:154173643-154173903(+)$1	260	116	119	8.9999
ooc	chrX:153579281-153579494(-)$1	213	106	109	8.9999
[cc	chrX:153585717-153585986(-)$1	269	165	168	8.9999
::e	chr3:184052546-184052803(+)$1	257	63	66	8.9999
B{D	chrX:153588103-153588322(-)$1	219	7	10	8.9999
ppp	chrX:153583150-153583381(-)$1	231	117	120	8.9999
EEE	chr3:184041942-184042168(+)$1	226	43	46	8.9999
hhh	chr6:37142744-37142987(+)$1	243	187	190	8.9999
===	chr3:184045616-184045869(+)$1	253	115	118	8.9999
cmm	chr17:80426592-80426872(+)$1	280	11	14	8.9999
::c	chrX:153587753-153587968(-)$1	215	0	3	8.9999
+++	chr1:19438936-19439184(-)$1	248	46	49	8.9999
nnd	chrX:153588477-153588699(-)$1	222	103	106	8.9999
pdd	chr9:95012380-95012664(-)$1	284	90	93	8.9999
===	chr3:184045563-184045816(+)$1	253	168	171	8.9999
:::	chrX:153586712-153586914(-)$1	202	42	45	8.9999
h!!	chr1:52260081-52260381(-)$1	300	96	99	8.9999
fff	chr17:29663653-29663992(+)$1	339	141	144	8.9999
nnn	chr17:29657272-29657612(+)$1	340	43	46	8.9999
:GG	chr2:61715622-61715875(-)$1	253	5	8	8.9999
:HH	chr11:61077675-61077894(-)$1	219	12	15	8.9999
2bb	chrX:153582537-153582758(-)$1	221	80	83	8.9999
===	chr2:54147933-54148285(-)$1	352	86	89	8.9999
ddd	chr17:57697321-57697527(+)$1	206	69	72	8.9999
:gg	chrX:153582746-153582951(-)$1	205	3	6	8.9999
::E	chrX:153587374-153587592(-)$1	218	40	43	8.9999
a[b	chr3:184040918-184041129(+)$1	211	13	16	8.9999
ee!	chr5:154172183-154172416(+)$1	233	16	19	8.9999
GGG	chrX:153587896-153588114(-)$1	218	143	146	8.9999
iii	chrX:153590835-153591046(-)$1	211	73	76	8.9999
C==	chr3:184044211-184044513(+)$1	302	59	62	8.9999
]gg	chr3:184041093-184041314(+)$1	221	126	129	8.9999
d:D	chr17:57738786-57739067(+)$1	281	63	66	8.9999
eeG	chr9:95027191-95027439(-)$1	248	121	124	8.9999
g""	chr17:57741133-57741396(+)$1	263	66	69	8.9999
:::	chr16:8992287-8992597(-)$1	310	14	17	8.9999
]bb	chr19:41807339-41807671(+)$1	332	117	120	8.9999
cpp	chr8:48874511-48874773(+)$1	262	150	153	8.9999
a22	chr3:184043002-184043261(+)$1	259	185	188	8.9999
EEE	chrX:41055788-41056054(+)$1	266	60	63	8.9999
]bb	chr2:48032672-48032939(+)$1	267	121	124	8.9999
C::	chrX:153587646-153587868(-)$1	222	175	178	8.9999
d]c	chrX:153578299-153578520(-)$1	221	155	158	8.9999
::g	chrX:153587804-153588048(-)$1	244	77	80	8.9999
dd$	chr9:94985535-94985798(-)$1	263	146	149	8.9999
EEE	chr3:184041917-184042142(+)$1	225	68	71	8.9999
bbc	chrX:153585809-153586063(-)$1	254	242	245	8.9999
TTB	chr9:95040426-95040645(-)$1	219	26	29	8.9999
ooo	chr17:57728474-57728744(+)$1	270	128	131	8.9999
fff	chr5:140956941-140957175(-)$1	234	96	99	8.9999
e[b	chrX:153590576-153590799(-)$1	223	110	113	8.9999
55e	chr17:45734128-45734382(+)$1	254	208	211	8.9999
33c	chrX:153585786-153586009(-)$1	223	188	191	8.9999
ddd	chrX:153587318-153587574(-)$1	256	22	25	8.9999
qqq	chr3:184039073-184039338(+)$1	265	70	73	8.9999
bdd	chr17:80443281-80443579(+)$1	298	153	156	8.9999
FFF	chrX:153586714-153586934(-)$1	220	62	65	8.9999
III	chr2:61719072-61719315(-)$1	243	134	137	8.9999
f##	chr3:184044940-184045270(+)$1	330	192	195	8.9999
H::	chr3:184040552-184040830(+)$1	278	14	17	8.9999
H{B	chr5:154173579-154173843(+)$1	264	23	26	8.9999
nff	chrX:153580650-153580909(-)$1	259	32	35	8.9999
qqf	chr18:29437507-29437935(-)$1	428	64	67	8.9999
eee	chrX:153586614-153586823(-)$1	209	97	100	8.9999
oii	chr16:8998978-8999283(-)$1	305	54	57	8.9999

#DB
..(	chr7:158457196-158457450(-)$1	1	119	122	8.9999
.((	chrX:153581979-153582189(-)$1	1	57	60	8.9999
.((	chrX:153582948-153583158(-)$1	1	53	56	8.9999
(((	chr15:60741107-60741480(-)$1	1	21	24	8.9999
...	chr1:19444232-19444488(-)$1	1	31	34	8.9999
(((	chr5:137902589-137902887(-)$1	1	32	35	8.9999
(.(	chrX:153580574-153580850(-)$1	1	56	59	8.9999
(((	chrX:153580152-153580356(-)$1	1	31	34	8.9999
...	chrX:153583193-153583464(-)$1	1	200	203	8.9999
(((	chrX:153578417-153578672(-)$1	1	74	77	8.9999
).(	chr17:57738759-57738986(+)$1	1	90	93	8.9999
(.(	chrX:153590511-153590744(-)$1	1	55	58	8.9999
)).	chr3:184046620-184046874(+)$1	1	49	52	8.9999
.((	chrX:153579868-153580121(-)$1	1	103	106	8.9999
(((	chr3:184043167-184043412(+)$1	1	20	23	8.9999
.((	chr1:117910660-117911141(+)$1	1	155	158	8.9999
.((	chr11:61083655-61083945(-)$1	1	1	4	8.9999
)))	chrX:153580236-153580476(-)$1	1	53	56	8.9999
)..	chrX:153588805-153589040(-)$1	1	208	211	8.9999
(((	chr11:122930509-122930758(-)$1	1	122	125	8.9999
.((	chrX:153588154-153588366(-)$1	1	5	8	8.9999
)))	chr12:6716408-6716648(-)$1	1	158	161	8.9999
(((	chr5:154173643-154173903(+)$1	1	116	119	8.9999
..)	chrX:153579281-153579494(-)$1	1	106	109	8.9999
.((	chrX:153585717-153585986(-)$1	1	165	168	8.9999
..(	chr3:184052546-184052803(+)$1	1	63	66	8.9999
(.(	chrX:153588103-153588322(-)$1	1	7	10	8.9999
...	chrX:153583150-153583381(-)$1	1	117	120	8.9999
(((	chr3:184041942-184042168(+)$1	1	43	46	8.9999
)))	chr6:37142744-37142987(+)$1	1	187	190	8.9999
(((	chr3:184045616-184045869(+)$1	1	115	118	8.9999
(..	chr17:80426592-80426872(+)$1	1	11	14	8.9999
..(	chrX:153587753-153587968(-)$1	1	0	3	8.9999
...	chr1:19438936-19439184(-)$1	1	46	49	8.9999
..)	chrX:153588477-153588699(-)$1	1	103	106	8.9999
.))	chr9:95012380-95012664(-)$1	1	90	93	8.9999
(((	chr3:184045563-184045816(+)$1	1	168	171	8.9999
...	chrX:153586712-153586914(-)$1	1	42	45	8.9999
(..	chr1:52260081-52260381(-)$1	1	96	99	8.9999
)))	chr17:29663653-29663992(+)$1	1	141	144	8.9999
...	chr17:29657272-29657612(+)$1	1	43	46	8.9999
.((	chr2:61715622-61715875(-)$1	1	5	8	8.9999
.((	chr11:61077675-61077894(-)$1	1	12	15	8.9999
.))	chrX:153582537-153582758(-)$1	1	80	83	8.9999
)))	chr2:54147933-54148285(-)$1	1	86	89	8.9999
)))	chr17:57697321-57697527(+)$1	1	69	72	8.9999
.((	chrX:153582746-153582951(-)$1	1	3	6	8.9999
..(	chrX:153587374-153587592(-)$1	1	40	43	8.9999
(.(	chr3:184040918-184041129(+)$1	1	13	16	8.9999
((.	chr5:154172183-154172416(+)$1	1	16	19	8.9999
)))	chrX:153587896-153588114(-)$1	1	143	146	8.9999
)))	chrX:153590835-153591046(-)$1	1	73	76	8.9999
(((	chr3:184044211-184044513(+)$1	1	59	62	8.9999
.))	chr3:184041093-184041314(+)$1	1	126	129	8.9999
).(	chr17:57738786-57739067(+)$1	1	63	66	8.9999
))(	chr9:95027191-95027439(-)$1	1	121	124	8.9999
(..	chr17:57741133-57741396(+)$1	1	66	69	8.9999
...	chr16:8992287-8992597(-)$1	1	14	17	8.9999
.))	chr19:41807339-41807671(+)$1	1	117	120	8.9999
(..	chr8:48874511-48874773(+)$1	1	150	153	8.9999
)..	chr3:184043002-184043261(+)$1	1	185	188	8.9999
(((	chrX:41055788-41056054(+)$1	1	60	63	8.9999
.))	chr2:48032672-48032939(+)$1	1	121	124	8.9999
)..	chrX:153587646-153587868(-)$1	1	175	178	8.9999
).)	chrX:153578299-153578520(-)$1	1	155	158	8.9999
..(	chrX:153587804-153588048(-)$1	1	77	80	8.9999
((.	chr9:94985535-94985798(-)$1	1	146	149	8.9999
(((	chr3:184041917-184042142(+)$1	1	68	71	8.9999
)))	chrX:153585809-153586063(-)$1	1	242	245	8.9999
..(	chr9:95040426-95040645(-)$1	1	26	29	8.9999
...	chr17:57728474-57728744(+)$1	1	128	131	8.9999
(((	chr5:140956941-140957175(-)$1	1	96	99	8.9999
(.(	chrX:153590576-153590799(-)$1	1	110	113	8.9999
..)	chr17:45734128-45734382(+)$1	1	208	211	8.9999
..)	chrX:153585786-153586009(-)$1	1	188	191	8.9999
(((	chrX:153587318-153587574(-)$1	1	22	25	8.9999
...	chr3:184039073-184039338(+)$1	1	70	73	8.9999
)((	chr17:80443281-80443579(+)$1	1	153	156	8.9999
(((	chrX:153586714-153586934(-)$1	1	62	65	8.9999
)))	chr2:61719072-61719315(-)$1	1	134	137	8.9999
(..	chr3:184044940-184045270(+)$1	1	192	195	8.9999
(..	chr3:184040552-184040830(+)$1	1	14	17	8.9999
(.(	chr5:154173579-154173843(+)$1	1	23	26	8.9999
.))	chrX:153580650-153580909(-)$1	1	32	35	8.9999
..)	chr18:29437507-29437935(-)$1	1	64	67	8.9999
)))	chrX:153586614-153586823(-)$1	1	97	100	8.9999
.))	chr16:8998978-8999283(-)$1	1	54	57	8.9999

#PSSM
C : 0.98	c : 0.01	
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	

#score	782.9999999999998
#seq	87
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_UTR_m1_run1.nuc.txt

#NT
uucucucucucucucucucucucucucucuc	chr12:66218348-66218617(+)$1	269	144	175	53.3061
cucucucucucucucucucucucucucucuc	chr12:66218514-66218804(+)$1	290	0	31	49.7346
cucccucccucccuccuucccucccucucuc	chr12:65089692-65089963(+)$1	271	194	225	37.3877
ugaucucucuccuccugucucuccaucucug	chr19:56091026-56091329(-)$1	303	118	149	31.2653
ugcccucucugggucucugucccccucucuc	chr19:48958407-48958671(+)$1	264	8	39	29.6326
Uucucucucucucucucucugucucucuguc	chr18:60998336-60998582(-)$1	246	3	34	48.3061
UUUUGGGucucucucucucucucucucucuc	chr5:92918948-92919231(+)$1	283	22	53	38.8163
gucucucucucucucucucucucucucucuc	chrX:106184467-106184725(-)$1	258	83	114	49.3265
uccuuccucuguuucuuucuuucuuccuuuc	chr16:57219723-57219964(-)$1	241	105	136	37.4897
uucuuuccuuccuacuuuccuucauucucuc	chr12:77416274-77416548(-)$1	274	81	112	36.5714
uccucugugucuuucugguuuucucucucuc	chr2:74779941-74780222(-)$1	281	60	91	35.8571
UCUuuuccuuuucuuuuucuuuccuuccuuc	chr1:205585285-205585535(-)$1	250	88	119	30.8571
UCUUGUUUUUCUUUCUUCCUUUCCUUUUCUC	chr3:113440327-113440589(-)$1	262	94	125	33.6122
Uucucucucucucucucucugucucucuguc	chr18:60998382-60998679(-)$1	297	100	131	48.3061
uucccucccuccuccuuucauucuccuucuc	chrX:122735240-122735498(-)$1	258	164	195	32.2857
uccuuuccuucucucucuuuuucuuucuuuu	chr2:158683007-158683269(-)$1	262	50	81	38.0000
uucccucuuuguuccuucuuuucccuuucuc	chr2:105964365-105964607(+)$1	242	102	133	32.7959
cccccucucucccuccucuccucucucucuc	chr5:92919031-92919287(+)$1	256	21	52	34.7346
cucuaucucucucucuuucucucuuucucuc	chr1:28300697-28300991(-)$1	294	123	154	48.8163
uucugucucuuucugucuuucugucucucuc	chr19:41828832-41829109(+)$1	277	36	67	36.6734
UUCCCUCUCCccuuccuucccuccuucuuuc	chr2:240898928-240899282(-)$1	354	6	37	36.9795
UCCCCUCUUUCAUUCUUUCUCUCCGUCUUUU	chr15:96874117-96874384(+)$1	267	9	40	39.0204
uccucuuucucucucuuccuuuuucucuucc	chr12:3919812-3920090(-)$1	278	156	187	38.1020
GUcucuuucucccccuuuguuucuuucuccu	chr3:196083180-196083529(-)$1	349	129	160	30.3469
uucuuccuuuccuccauuccuucuuucuuuc	chr7:96639511-96639759(+)$1	248	27	58	33.9183
cucuaucucucucucuuucucucuuucucuc	chr1:28300652-28300897(-)$1	245	29	60	48.8163
UCCCCUCUUUCAUUCUUUCUCUCCGUCUUUU	chr15:96874014-96874292(+)$1	278	112	143	39.0204
uccuuucuuucucucuuucucugucucucuc	chr19:18670656-18670932(+)$1	276	31	62	48.9183
uuguuuccuucuuuccuacuuucuuucacuc	chr2:77744645-77744915(-)$1	270	92	123	32.8979
UUCUAUUUUUUUCUCUCUGUUUAUCGCUCUC	chr16:8807200-8807492(+)$1	292	83	114	31.5714
uuccuuccuucccuguuuccuucccucuuuc	chr22:35690686-35690972(+)$1	286	113	144	36.6734
UUCCCUCUCCccuuccuucccuccuucuuuc	chr2:240899082-240899354(-)$1	272	78	109	36.9795
UCUGUUCUUUUCCUCUUUCUUUGUGUCUCUC	chr1:145523043-145523374(+)$1	331	88	119	35.5510
UAGUUUCUUUUCCUCCUUCUCUCUUUCUUGC	chr15:35663889-35664223(-)$1	334	184	215	33.7142
uuguuucugcuccuccucuucucucucuuuc	chr5:112227542-112227835(-)$1	293	106	137	29.4285
uucuuucuuucuuucuuucuuucuuucuuuc	chr1:151668927-151669172(+)$1	245	11	42	50.2448
uucuuucuuucuuucuuucuuucuuucuuuc	chr1:151668872-151669127(+)$1	255	66	97	50.2448
ucuucucucucucucucucucucucugucuc	chr2:164461173-164461490(-)$1	317	152	183	44.5306
UGcccuuccucccucuuucuuucccucccuc	chr20:251449-251768(-)$1	319	42	73	36.3673
uccucucuugcuuucuuccucccuuccuuuc	chr3:188596980-188597228(+)$1	248	45	76	35.4489
uccccuccuuuucuuuuuccuuccuucuuuc	chr14:35498370-35498641(+)$1	271	129	160	35.1428
UUCACUUUCCUUCUCGUCCUCUGUGUUUCUC	chrX:119694451-119694717(-)$1	266	80	111	25.9591
uucucuccuucccucuuuccCCACCUCUUCC	chr11:73685765-73686081(-)$1	316	121	152	32.5918
uucucucucccucucucucucucucccucuc	chr7:96639487-96639710(+)$1	223	8	39	45.3469
UGcucucucucucucuuucucucucucucuc	chr17:37688273-37688565(+)$1	292	65	96	53.2040
uccucucucuuccccuuucacucuuucucuu	chr3:8919339-8919614(-)$1	275	52	83	38.6122
CCCUCUAUUUCUCUCUUUCUUGGUGUCUGUC	chr1:204095948-204096228(+)$1	280	94	125	33.4081
uucccucuuuguuccuucuuuucccuuucuc	chr2:105964418-105964630(+)$1	212	49	80	32.7959

#otherMatches

#Struct PSSM
:::::::::::::::::::::::::::::::	chr11:82691737-82692023(-)$1	286	80	111	36.3673
:::::::::::::::::::::::::::::::	chr12:66218348-66218617(+)$1	269	144	175	53.3061
:::::::::::::::::::::::::::::::	chr12:66218514-66218804(+)$1	290	0	31	49.7346
:::::::::::::::::::::::::::::::	chr12:65089692-65089963(+)$1	271	194	225	37.3877
::::::::::::::::ccc+++++++++++c	chr19:56091026-56091329(-)$1	303	118	149	31.2653
:EEEEEJJJJJJJJJJJffffff((((((((	chr19:48958407-48958671(+)$1	264	8	39	29.6326
ooooooccc::::::::::::::::::::::	chr18:60998336-60998582(-)$1	246	3	34	48.3061
^^^dddd:::::::::::::::JJJJJJJJJ	chr5:92918948-92919231(+)$1	283	22	53	38.8163
::::::::::::::::::::::::::::DDD	chrX:106184467-106184725(-)$1	258	83	114	49.3265
ffffff4444ggggggg333ffffffbb]dd	chr16:57219723-57219964(-)$1	241	105	136	37.4897
^^^^^^^^^^^^^^^^^^^^^eeeee22ddd	chr12:77416274-77416548(-)$1	274	81	112	36.5714
::::eeeee&&&&&&&bbqqqqqqqqbb888	chr2:74779941-74780222(-)$1	281	60	91	35.8571
_____DDDD}CCC////////DDDD::::::	chr1:205585285-205585535(-)$1	250	88	119	30.8571
JJJJ{DDDDNNNNNBB{DDDD{A::::ccc[	chr3:113440327-113440589(-)$1	262	94	125	33.6122
hhhhh:::::::::::::::a[annnnna]a	chr18:60998382-60998679(-)$1	297	100	131	48.3061
:::::::::::::::::::::::::::::::	chrX:122735240-122735498(-)$1	258	164	195	32.2857
:::::::::::::::::::::::::::::::	chr2:158683007-158683269(-)$1	262	50	81	38.0000
:::::::::::::::::::::::::::::::	chr2:105964365-105964607(+)$1	242	102	133	32.7959
:::::::::::GGGGGGGEEEEE{CCC{EEE	chr5:92919031-92919287(+)$1	256	21	52	34.7346
ggggg]ffffff]bb::::::::::::::::	chr1:28300697-28300991(-)$1	294	123	154	48.8163
++++++++++++++dddd####ccc$$$$$b	chr19:41828832-41829109(+)$1	277	36	67	36.6734
:::::::::::::::::::::::::::::::	chr2:240898928-240899282(-)$1	354	6	37	36.9795
::::::::::::::::::A{BB{EEEEEMMM	chr15:96874117-96874384(+)$1	267	9	40	39.0204
:::::::::::::::::::::::::::::::	chr12:3919812-3920090(-)$1	278	156	187	38.1020
e::::::::::::::::::::::::::::::	chr3:196083180-196083529(-)$1	349	129	160	30.3469
:::::::::::::::::::::::::::::::	chr7:96639511-96639759(+)$1	248	27	58	33.9183
:::::::::::::::::::::::::::::::	chr1:28300652-28300897(-)$1	245	29	60	48.8163
::::::::::::::::::::::::apppppp	chr15:96874014-96874292(+)$1	278	112	143	39.0204
:::::::::::::::::::::::::::::::	chr19:18670656-18670932(+)$1	276	31	62	48.9183
::EEEEE{DDDD:::::::::::::::::::	chr2:77744645-77744915(-)$1	270	92	123	32.8979
mma]hhhhhhhh:::::::::::::bbrrrr	chr16:8807200-8807492(+)$1	292	83	114	31.5714
^^^^^^^^^^^^dddd]bb::::::::::::	chr22:35690686-35690972(+)$1	286	113	144	36.6734
:::::::::::::::::::::::::::::::	chr2:240899082-240899354(-)$1	272	78	109	36.9795
ff88888888bb]==========22dddddd	chr1:145523043-145523374(+)$1	331	88	119	35.5510
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr15:35663889-35664223(-)$1	334	184	215	33.7142
eeee:::::::::::::::::::::::::::	chr5:112227542-112227835(-)$1	293	106	137	29.4285
:::::::::::::::::::::::::::::::	chr1:151668927-151669172(+)$1	245	11	42	50.2448
:::::::::::::::::::::::::::::::	chr1:151668872-151669127(+)$1	255	66	97	50.2448
:::::::::::::::::::::::::::FFFF	chr2:164461173-164461490(-)$1	317	152	183	44.5306
"bbbb!!bb^^^^^^^^^^^^^^^^^^^^^^	chr20:251449-251768(-)$1	319	42	73	36.3673
dddd:::::IIIIIIIII:EEEEE:::::::	chr3:188596980-188597228(+)$1	248	45	76	35.4489
======:::::::::::::::::::::::::	chr14:35498370-35498641(+)$1	271	129	160	35.1428
::ccczzzzzzzzzzzzzzzzzccc::::::	chrX:119694451-119694717(-)$1	266	80	111	25.9591
:::::::::::::::::ddddccc[bb$$$$	chr11:73685765-73686081(-)$1	316	121	152	32.5918
IIIIIIIIIADDDD{JJJJJJJJJJ::::::	chr7:96639487-96639710(+)$1	223	8	39	45.3469
eeee:::::::BB{FFFFFF:::::::::::	chr17:37688273-37688565(+)$1	292	65	96	53.2040
FLLLCCCGGGGGGG{CCCLLLCCC:::::::	chr3:8919339-8919614(-)$1	275	52	83	38.6122
dbb^^^^^^^^^^^^^^^^^^bb]ddddddd	chr1:204095948-204096228(+)$1	280	94	125	33.4081
::::::::::CCCCCCKKEEEEEFFFFFF::	chr2:105964418-105964630(+)$1	212	49	80	32.7959

#DB
...............................	chr11:82691737-82692023(-)$1	1	80	111	36.3673
...............................	chr12:66218348-66218617(+)$1	1	144	175	53.3061
...............................	chr12:66218514-66218804(+)$1	1	0	31	49.7346
...............................	chr12:65089692-65089963(+)$1	1	194	225	37.3877
................(((...........(	chr19:56091026-56091329(-)$1	1	118	149	31.2653
.((((((((((((((((((((((........	chr19:48958407-48958671(+)$1	1	8	39	29.6326
......)))......................	chr18:60998336-60998582(-)$1	1	3	34	48.3061
...))))...............(((((((((	chr5:92918948-92919231(+)$1	1	22	53	38.8163
............................(((	chrX:106184467-106184725(-)$1	1	83	114	49.3265
))))))....)))))))...)))))))).))	chr16:57219723-57219964(-)$1	1	105	136	37.4897
.....................)))))..)))	chr12:77416274-77416548(-)$1	1	81	112	36.5714
....(((((.......((........))...	chr2:74779941-74780222(-)$1	1	60	91	35.8571
.....)))).)))........))))......	chr1:205585285-205585535(-)$1	1	88	119	30.8571
((((.((((.....((.((((.(....(((.	chr3:113440327-113440589(-)$1	1	94	125	33.6122
)))))...............(.(.....).)	chr18:60998382-60998679(-)$1	1	100	131	48.3061
...............................	chrX:122735240-122735498(-)$1	1	164	195	32.2857
...............................	chr2:158683007-158683269(-)$1	1	50	81	38.0000
...............................	chr2:105964365-105964607(+)$1	1	102	133	32.7959
...........((((((((((((.(((.(((	chr5:92919031-92919287(+)$1	1	21	52	34.7346
))))).)))))).))................	chr1:28300697-28300991(-)$1	1	123	154	48.8163
..............((((....(((.....(	chr19:41828832-41829109(+)$1	1	36	67	36.6734
...............................	chr2:240898928-240899282(-)$1	1	6	37	36.9795
..................(.((.(((((...	chr15:96874117-96874384(+)$1	1	9	40	39.0204
...............................	chr12:3919812-3920090(-)$1	1	156	187	38.1020
)..............................	chr3:196083180-196083529(-)$1	1	129	160	30.3469
...............................	chr7:96639511-96639759(+)$1	1	27	58	33.9183
...............................	chr1:28300652-28300897(-)$1	1	29	60	48.8163
........................(......	chr15:96874014-96874292(+)$1	1	112	143	39.0204
...............................	chr19:18670656-18670932(+)$1	1	31	62	48.9183
..(((((.((((...................	chr2:77744645-77744915(-)$1	1	92	123	32.8979
..).)))))))).............((....	chr16:8807200-8807492(+)$1	1	83	114	31.5714
............)))).))............	chr22:35690686-35690972(+)$1	1	113	144	36.6734
...............................	chr2:240899082-240899354(-)$1	1	78	109	36.9795
))........)).))))))))))..))))))	chr1:145523043-145523374(+)$1	1	88	119	35.5510
............................)))	chr15:35663889-35664223(-)$1	1	184	215	33.7142
))))...........................	chr5:112227542-112227835(-)$1	1	106	137	29.4285
...............................	chr1:151668927-151669172(+)$1	1	11	42	50.2448
...............................	chr1:151668872-151669127(+)$1	1	66	97	50.2448
...........................((((	chr2:164461173-164461490(-)$1	1	152	183	44.5306
.((((..((......................	chr20:251449-251768(-)$1	1	42	73	36.3673
)))).....(((((((((.(((((.......	chr3:188596980-188597228(+)$1	1	45	76	35.4489
)))))).........................	chr14:35498370-35498641(+)$1	1	129	160	35.1428
..(((.................)))......	chrX:119694451-119694717(-)$1	1	80	111	25.9591
.................(((((((.((....	chr11:73685765-73686081(-)$1	1	121	152	32.5918
((((((((((((((.((((((((((......	chr7:96639487-96639710(+)$1	1	8	39	45.3469
)))).......((.((((((...........	chr17:37688273-37688565(+)$1	1	65	96	53.2040
(...((((((((((.(((...(((.......	chr3:8919339-8919614(-)$1	1	52	83	38.6122
(((..................)).))))(((	chr1:204095948-204096228(+)$1	1	94	125	33.4081
..........((((((..(((((((((((..	chr2:105964418-105964630(+)$1	1	49	80	32.7959

#PSSM
u : 0.53	U : 0.30	c : 0.10	g : 0.02	G : 0.02	C : 0.02	
u : 0.44	c : 0.20	U : 0.12	C : 0.12	g : 0.04	G : 0.04	A : 0.02	
c : 0.65	C : 0.14	U : 0.08	u : 0.04	g : 0.04	a : 0.02	G : 0.02	
u : 0.59	c : 0.18	U : 0.10	C : 0.08	G : 0.02	A : 0.02	
c : 0.46	u : 0.24	C : 0.12	G : 0.04	a : 0.04	U : 0.04	g : 0.02	A : 0.02	
u : 0.73	U : 0.20	c : 0.04	G : 0.02	
c : 0.69	C : 0.12	U : 0.06	u : 0.06	G : 0.02	g : 0.02	A : 0.02	
u : 0.59	c : 0.20	U : 0.20	
c : 0.44	u : 0.30	U : 0.14	C : 0.06	g : 0.04	
u : 0.73	U : 0.14	C : 0.06	c : 0.04	g : 0.02	
c : 0.65	u : 0.10	g : 0.08	C : 0.08	U : 0.08	
u : 0.53	c : 0.28	U : 0.08	A : 0.04	C : 0.04	g : 0.02	
c : 0.53	u : 0.28	C : 0.10	U : 0.06	g : 0.02	
u : 0.67	U : 0.16	c : 0.14	a : 0.02	
c : 0.73	C : 0.16	u : 0.06	g : 0.04	
u : 0.69	c : 0.12	U : 0.12	a : 0.02	C : 0.02	G : 0.02	
u : 0.57	c : 0.22	U : 0.14	g : 0.04	C : 0.02	
u : 0.65	c : 0.14	U : 0.12	C : 0.04	g : 0.02	a : 0.02	
c : 0.65	u : 0.14	C : 0.14	g : 0.04	G : 0.02	
u : 0.61	c : 0.18	U : 0.16	a : 0.04	
c : 0.42	u : 0.34	C : 0.10	U : 0.08	g : 0.04	
u : 0.77	U : 0.14	c : 0.04	C : 0.02	G : 0.02	
c : 0.75	C : 0.08	G : 0.06	g : 0.04	A : 0.04	u : 0.02	
u : 0.57	c : 0.22	U : 0.10	C : 0.08	a : 0.02	
c : 0.44	u : 0.32	G : 0.10	a : 0.04	U : 0.04	C : 0.04	
u : 0.73	U : 0.16	c : 0.08	G : 0.02	
c : 0.71	C : 0.14	u : 0.08	U : 0.04	g : 0.02	
u : 0.75	U : 0.18	c : 0.04	a : 0.02	
c : 0.48	u : 0.28	C : 0.08	U : 0.08	g : 0.04	G : 0.02	
u : 0.77	U : 0.14	c : 0.04	G : 0.02	C : 0.02	
c : 0.73	C : 0.14	u : 0.06	U : 0.04	g : 0.02	

#score	1885.9795918367367
#seq	49
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_CDS_m3_run1.nuc.txt

#NT
UUUGUGUUUAAUUAUAGUUCAUCCUAGAAAAUAUUCUUUCAUUUUAUUUCUAAAUCCUAAUUGGUUAUGUUGACUUUAAAUACUUCUUAUAAAAUACAGAGCCUGAACUUGGAGGACCAAAUUGAGAGUGAUGAGUCAGAACUGAAGAAAUUGAAGACUGAAGAAAAUUCGUUCAAAAGACUGAUGAUUGUGAAGAAGGAAAAACUUGCCACAGCACAAUUCAAAAUAAAUAAGAAGCAUGAAGAUGUUAAGCAAUACAAACGCACAGUAAUUGAGUAUGGAGUUGUUUUCAAUUUUAGUGUAUUAGAAAGCAAUUAUGAAAAACAAAUACAUUUUUCCCCCAGGAU	chr1:163317453-163317824(+)$1	371	0	347	473.5000

#otherMatches

#Struct PSSM
::::::GGGGGGG:bboooooobb::::::::::dddd[ccc"""dddd$$$$$ggggggg!!dddd[ddddqqqqqqqqdddd]ddddggggggg333dddd333ccc]dddd:::GGGGGGG:CCCLLLEEEEE:::::::::bbuuuuuuuuuuuubb:::::::FFFFFF::::eeeeemmmmeeeee::FFFFFF{BB::eeeeebbmmmmbb]eeeee::::::::::::hhhhhhhhppppppphhhhhhhh:BB}FFFFFF////////FFFFFF______EEEEE}CCC:ddddbbqqqqqqqqbb]dddd:::::::ddddqqqqqqqqdddd::::	chr17:16024330-16024683(-)$1	353	6	353	473.5000
:::hhhhhhhh####ddddcccbbffffffyyyyyyyyyyyyyyyyffffff0000000000bb22ccc22ddddhhhhhhhh:::::::GGGGGGG{CCCKKDDDDEEEEE{CCCbb"""bb[a[ccc[bb[dddd$$$$$dddd!!ddddvvvvvvvvvvvvvdddd22dddd333dddd]bb]ccc]a]bb333bb:::::::cccmmmmccc:::::::::::::::::::eeeeemmmmeeeee::bbrrrrrrrrrbb:::ccc[ccc&&&&&&&==========cccqqqqqqqqccc]==========88888888ccc]ccc:::::CCC}EEEEEYY	chr1:163317453-163317824(+)$1	371	0	347	473.5000

#DB
......(((((((.((......))..........((((.(((...((((.....(((((((..((((.((((........)))).)))))))))))...))))...))).))))...))))))).(((...(((((.........((............)).......((((((....(((((....)))))..((((((.((..(((((((....)).)))))............((((((((.......)))))))).)).))))))........))))))......))))).))).((((((........)).)))).......((((........))))....	chr17:16024330-16024683(-)$1	1	6	353	473.5000
...((((((((....(((((((((((((((................))))))..........))..)))..)))))))))))).......(((((((.(((..(((((((((.(((((...((.(.(((.((.((((.....((((..((((.............))))..))))...)))).)).))).).))...)).......(((....)))...................(((((....)))))..((.........))...(((.(((.......(((((((((((((........))).))))))))))........))).))).....))).)))))..	chr1:163317453-163317824(+)$1	1	0	347	473.5000

#PSSM
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 1.00	

#score	947.0
#seq	2
#width	347
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_CDS_m2_run1.nuc.txt

#NT
gggcc	chr16:30134299-30134609(-)$1	310	24	29	14.9999
GGGCC	chr22:38075509-38075751(+)$1	242	26	31	14.9999
GGGCC	chr9:140002739-140002994(+)$1	255	1	6	14.9999
GGGCC	chr6:30695763-30696006(-)$1	243	13	18	14.9999
GGGCC	chr3:48481604-48481822(+)$1	218	19	24	14.9999
GGGCC	chr22:21982563-21982838(-)$1	275	7	12	14.9999
GGGCC	chr19:49378970-49379289(+)$1	319	69	74	14.9999
GGGCC	chr4:667899-668120(-)$1	221	155	160	14.9999
GGGCC	chr16:223383-223637(+)$1	254	52	57	14.9999
GGGCC	chr19:50919674-50919886(+)$1	212	85	90	14.9999
GGGCC	chr7:99751453-99751726(+)$1	273	175	180	14.9999
GGGCC	chr9:139566614-139566829(+)$1	215	26	31	14.9999
GGGCC	chr7:99746472-99746696(+)$1	224	64	69	14.9999
GGGCC	chr19:41306416-41306667(+)$1	251	13	18	14.9999
GGGCC	chr16:1399226-1399527(-)$1	301	40	45	14.9999
GGGCC	chr19:13033473-13033725(-)$1	252	70	75	14.9999
GGGCC	chr8:144662587-144662844(-)$1	257	195	200	14.9999
GGGCC	chr16:1838600-1838883(+)$1	283	12	17	14.9999
GGGCC	chr11:67379742-67380028(+)$1	286	39	44	14.9999
GGGCC	chr5:149776224-149776474(+)$1	250	73	78	14.9999
GGGCC	chr11:66373080-66373340(+)$1	260	49	54	14.9999
GGGCC	chr11:67378563-67378778(+)$1	215	125	130	14.9999
GGGCC	chr16:230569-230828(+)$1	259	41	46	14.9999
GGGCC	chr19:55998126-55998412(+)$1	286	30	35	14.9999
GGGCC	chrX:153195401-153195662(-)$1	261	108	113	14.9999
GGGCC	chr19:45412375-45412681(+)$1	306	58	63	14.9999
GGGCC	chr9:139566415-139566632(+)$1	217	164	169	14.9999
GGGCC	chr16:230391-230618(+)$1	227	219	224	14.9999
GGGCC	chr11:118965534-118965780(-)$1	246	51	56	14.9999
GGGCC	chr1:880334-880585(-)$1	251	236	241	14.9999
GGGCC	chr15:79214307-79214637(-)$1	330	64	69	14.9999
gggcc	chr14:23790683-23790931(+)$1	248	52	57	14.9999
GGGCC	chr14:21484915-21485227(-)$1	312	83	88	14.9999
GGGCC	chr14:102516332-102516556(+)$1	224	90	95	14.9999
GGGCC	chr17:79650965-79651227(+)$1	262	9	14	14.9999
GGGCC	chr9:139566432-139566640(+)$1	208	147	152	14.9999
GGGCC	chrX:153195462-153195783(-)$1	321	32	37	14.9999
GGGCC	chr17:76109526-76109781(-)$1	255	202	207	14.9999
GGGCC	chr1:36769426-36769663(+)$1	237	14	19	14.9999
GGGCC	chr12:53689231-53689461(+)$1	230	200	205	14.9999
GGGCC	chr19:12841737-12841981(-)$1	244	124	129	14.9999
GGGCC	chr11:67817938-67818227(+)$1	289	33	38	14.9999
GGGCC	chr17:18148320-18148602(-)$1	282	192	197	14.9999
GGGCC	chr19:38746762-38747038(-)$1	276	34	39	14.9999
gggcc	chr19:50354436-50354729(+)$1	293	190	195	14.9999
GGGCC	chr9:140005018-140005310(-)$1	292	49	54	14.9999
GGGCC	chr11:64084478-64084714(-)$1	236	119	124	14.9999
GGGCC	chr19:51228419-51228688(+)$1	269	76	81	14.9999
GGGCC	chr2:74754049-74754292(-)$1	243	167	172	14.9999
GGGCC	chr7:142638224-142638498(-)$1	274	67	72	14.9999
GGGCC	chrX:153173170-153173499(-)$1	329	145	150	14.9999
GGGCC	chr16:685177-685398(-)$1	221	2	7	14.9999
GGGCC	chr22:20100604-20100847(-)$1	243	120	125	14.9999
GGGCC	chr22:21354425-21354680(-)$1	255	118	123	14.9999
GGGCC	chr3:52443772-52444047(-)$1	275	36	41	14.9999
GGGCC	chr7:65556893-65557157(+)$1	264	36	41	14.9999
GGGCC	chr19:2427311-2427603(-)$1	292	229	234	14.9999
GGGCC	chr11:67379490-67379746(+)$1	256	226	231	14.9999
GGGCC	chr6:33246921-33247231(-)$1	310	141	146	14.9999
GGGCC	chr19:38797967-38798208(-)$1	241	9	14	14.9999
GGGCC	chr19:50363433-50363687(+)$1	254	118	123	14.9999

#otherMatches

#Struct PSSM
cc444	chr1:155112557-155112791(-)$1	234	152	157	14.9999
EE{BB	chr16:30134299-30134609(-)$1	310	24	29	14.9999
JJJJJ	chr22:38075509-38075751(+)$1	242	26	31	14.9999
eeee#	chr9:140002739-140002994(+)$1	255	1	6	14.9999
dddd:	chr6:30695763-30696006(-)$1	243	13	18	14.9999
BKKJJ	chr3:48481604-48481822(+)$1	218	19	24	14.9999
HHHHH	chr22:21982563-21982838(-)$1	275	7	12	14.9999
iiiim	chr19:49378970-49379289(+)$1	319	69	74	14.9999
ffff:	chr4:667899-668120(-)$1	221	155	160	14.9999
ccc[c	chr16:223383-223637(+)$1	254	52	57	14.9999
ddbb:	chr19:50919674-50919886(+)$1	212	85	90	14.9999
]ffff	chr7:99751453-99751726(+)$1	273	175	180	14.9999
FFFFE	chr9:139566614-139566829(+)$1	215	26	31	14.9999
GGGLL	chr7:99746472-99746696(+)$1	224	64	69	14.9999
CCC{A	chr19:41306416-41306667(+)$1	251	13	18	14.9999
FFFFK	chr16:1399226-1399527(-)$1	301	40	45	14.9999
eee55	chr19:13033473-13033725(-)$1	252	70	75	14.9999
c[fff	chr8:144662587-144662844(-)$1	257	195	200	14.9999
ddppp	chr16:1838600-1838883(+)$1	283	12	17	14.9999
EEEEE	chr11:67379742-67380028(+)$1	286	39	44	14.9999
CCCCC	chr5:149776224-149776474(+)$1	250	73	78	14.9999
=[ccc	chr11:66373080-66373340(+)$1	260	49	54	14.9999
ldddd	chr11:67378563-67378778(+)$1	215	125	130	14.9999
eeeev	chr16:230569-230828(+)$1	259	41	46	14.9999
fffff	chr19:55998126-55998412(+)$1	286	30	35	14.9999
fffff	chrX:153195401-153195662(-)$1	261	108	113	14.9999
DDDDD	chr19:45412375-45412681(+)$1	306	58	63	14.9999
iiiii	chr9:139566415-139566632(+)$1	217	164	169	14.9999
GGG::	chr16:230391-230618(+)$1	227	219	224	14.9999
ccccc	chr11:118965534-118965780(-)$1	246	51	56	14.9999
FFFFF	chr1:880334-880585(-)$1	251	236	241	14.9999
ggggg	chr15:79214307-79214637(-)$1	330	64	69	14.9999
IIKKD	chr14:23790683-23790931(+)$1	248	52	57	14.9999
ooodd	chr14:21484915-21485227(-)$1	312	83	88	14.9999
eeee:	chr14:102516332-102516556(+)$1	224	90	95	14.9999
EEEEE	chr17:79650965-79651227(+)$1	262	9	14	14.9999
iiiii	chr9:139566432-139566640(+)$1	208	147	152	14.9999
iiiii	chrX:153195462-153195783(-)$1	321	32	37	14.9999
~~~CC	chr17:76109526-76109781(-)$1	255	202	207	14.9999
g!!dd	chr1:36769426-36769663(+)$1	237	14	19	14.9999
bbccc	chr12:53689231-53689461(+)$1	230	200	205	14.9999
fffff	chr19:12841737-12841981(-)$1	244	124	129	14.9999
:iiii	chr11:67817938-67818227(+)$1	289	33	38	14.9999
DDD{B	chr17:18148320-18148602(-)$1	282	192	197	14.9999
MMMFF	chr19:38746762-38747038(-)$1	276	34	39	14.9999
FFF}B	chr19:50354436-50354729(+)$1	293	190	195	14.9999
mffff	chr9:140005018-140005310(-)$1	292	49	54	14.9999
ppppd	chr11:64084478-64084714(-)$1	236	119	124	14.9999
ddppp	chr19:51228419-51228688(+)$1	269	76	81	14.9999
ggggg	chr2:74754049-74754292(-)$1	243	167	172	14.9999
dddd]	chr7:142638224-142638498(-)$1	274	67	72	14.9999
fffff	chrX:153173170-153173499(-)$1	329	145	150	14.9999
DDDDd	chr16:685177-685398(-)$1	221	2	7	14.9999
hhhhh	chr22:20100604-20100847(-)$1	243	120	125	14.9999
ffffb	chr22:21354425-21354680(-)$1	255	118	123	14.9999
[eeee	chr3:52443772-52444047(-)$1	275	36	41	14.9999
iiiee	chr7:65556893-65557157(+)$1	264	36	41	14.9999
ppppa	chr19:2427311-2427603(-)$1	292	229	234	14.9999
ffffb	chr11:67379490-67379746(+)$1	256	226	231	14.9999
dddd2	chr6:33246921-33247231(-)$1	310	141	146	14.9999
DDDDE	chr19:38797967-38798208(-)$1	241	9	14	14.9999
CCC{F	chr19:50363433-50363687(+)$1	254	118	123	14.9999

#DB
))...	chr1:155112557-155112791(-)$1	1	152	157	14.9999
((.((	chr16:30134299-30134609(-)$1	1	24	29	14.9999
(((((	chr22:38075509-38075751(+)$1	1	26	31	14.9999
((((.	chr9:140002739-140002994(+)$1	1	1	6	14.9999
)))).	chr6:30695763-30696006(-)$1	1	13	18	14.9999
(..((	chr3:48481604-48481822(+)$1	1	19	24	14.9999
(((((	chr22:21982563-21982838(-)$1	1	7	12	14.9999
((((.	chr19:49378970-49379289(+)$1	1	69	74	14.9999
)))).	chr4:667899-668120(-)$1	1	155	160	14.9999
(((.(	chr16:223383-223637(+)$1	1	52	57	14.9999
)))).	chr19:50919674-50919886(+)$1	1	85	90	14.9999
.))))	chr7:99751453-99751726(+)$1	1	175	180	14.9999
(((((	chr9:139566614-139566829(+)$1	1	26	31	14.9999
(((..	chr7:99746472-99746696(+)$1	1	64	69	14.9999
(((.(	chr19:41306416-41306667(+)$1	1	13	18	14.9999
((((.	chr16:1399226-1399527(-)$1	1	40	45	14.9999
)))..	chr19:13033473-13033725(-)$1	1	70	75	14.9999
(.(((	chr8:144662587-144662844(-)$1	1	195	200	14.9999
((...	chr16:1838600-1838883(+)$1	1	12	17	14.9999
(((((	chr11:67379742-67380028(+)$1	1	39	44	14.9999
(((((	chr5:149776224-149776474(+)$1	1	73	78	14.9999
(.(((	chr11:66373080-66373340(+)$1	1	49	54	14.9999
.))))	chr11:67378563-67378778(+)$1	1	125	130	14.9999
((((.	chr16:230569-230828(+)$1	1	41	46	14.9999
(((((	chr19:55998126-55998412(+)$1	1	30	35	14.9999
(((((	chrX:153195401-153195662(-)$1	1	108	113	14.9999
(((((	chr19:45412375-45412681(+)$1	1	58	63	14.9999
(((((	chr9:139566415-139566632(+)$1	1	164	169	14.9999
)))..	chr16:230391-230618(+)$1	1	219	224	14.9999
(((((	chr11:118965534-118965780(-)$1	1	51	56	14.9999
)))))	chr1:880334-880585(-)$1	1	236	241	14.9999
)))))	chr15:79214307-79214637(-)$1	1	64	69	14.9999
((..(	chr14:23790683-23790931(+)$1	1	52	57	14.9999
...))	chr14:21484915-21485227(-)$1	1	83	88	14.9999
)))).	chr14:102516332-102516556(+)$1	1	90	95	14.9999
(((((	chr17:79650965-79651227(+)$1	1	9	14	14.9999
(((((	chr9:139566432-139566640(+)$1	1	147	152	14.9999
(((((	chrX:153195462-153195783(-)$1	1	32	37	14.9999
...))	chr17:76109526-76109781(-)$1	1	202	207	14.9999
(..((	chr1:36769426-36769663(+)$1	1	14	19	14.9999
(((((	chr12:53689231-53689461(+)$1	1	200	205	14.9999
(((((	chr19:12841737-12841981(-)$1	1	124	129	14.9999
.((((	chr11:67817938-67818227(+)$1	1	33	38	14.9999
(((.(	chr17:18148320-18148602(-)$1	1	192	197	14.9999
...((	chr19:38746762-38747038(-)$1	1	34	39	14.9999
))).)	chr19:50354436-50354729(+)$1	1	190	195	14.9999
.))))	chr9:140005018-140005310(-)$1	1	49	54	14.9999
....)	chr11:64084478-64084714(-)$1	1	119	124	14.9999
((...	chr19:51228419-51228688(+)$1	1	76	81	14.9999
)))))	chr2:74754049-74754292(-)$1	1	167	172	14.9999
)))).	chr7:142638224-142638498(-)$1	1	67	72	14.9999
(((((	chrX:153173170-153173499(-)$1	1	145	150	14.9999
(((((	chr16:685177-685398(-)$1	1	2	7	14.9999
)))))	chr22:20100604-20100847(-)$1	1	120	125	14.9999
(((((	chr22:21354425-21354680(-)$1	1	118	123	14.9999
.((((	chr3:52443772-52444047(-)$1	1	36	41	14.9999
(((((	chr7:65556893-65557157(+)$1	1	36	41	14.9999
....)	chr19:2427311-2427603(-)$1	1	229	234	14.9999
)))))	chr11:67379490-67379746(+)$1	1	226	231	14.9999
)))).	chr6:33246921-33247231(-)$1	1	141	146	14.9999
(((((	chr19:38797967-38798208(-)$1	1	9	14	14.9999
(((.(	chr19:50363433-50363687(+)$1	1	118	123	14.9999

#PSSM
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	

#score	929.9999999999999
#seq	62
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_UTR_m1_run2.nuc.txt

#NT
cacacacacacacacacacacacacacacacacacacac	chr15:40845942-40846178(-)$1	236	13	52	106.7115
cacacacacacacacacacacacacacacacacacacac	chrX:118750980-118751196(-)$1	216	85	124	106.7115
cacacacacacacacacacacacacacacacacacacac	chr3:45636215-45636473(+)$1	258	56	95	106.7115
cauacacacacacacacacacacacaaacacacacaUUU	chr4:145031818-145032050(-)$1	232	68	107	87.4807
CAGacacacacacacacacacacacacacacacacacuc	chr20:37206230-37206567(+)$1	337	108	147	99.1153
cacagacacacacacacacacacacacacacacacacac	chr12:102792754-102793073(-)$1	319	144	183	102.0961
CUCUcacacacacacacacacgcacacacacacacacaG	chr3:128532285-128532534(+)$1	249	139	178	89.2115
GAUacacacacacacacacauauauauacacacacauac	chr1:52253776-52253985(+)$1	209	48	87	79.3076
UAUacacacacacacgugcacacacacacacacacacac	chr2:106510392-106510677(+)$1	285	45	84	86.0384
AAAAAAAAAAUacacacacacacacacacacacacacac	chr16:4737459-4737770(+)$1	311	109	148	80.6538
cacacacacacacacacacacacacacacacacacacac	chr16:67209899-67210152(-)$1	253	130	169	106.7115
cacacacacacacacacacacacacacacacacacacac	chr16:67209797-67210092(-)$1	295	70	109	106.7115
cauacacacacacauacacacagacacacagagucacac	chr11:72433023-72433350(-)$1	327	56	95	81.1346
Aacacacacacacacacacacacacacacacacacacac	chr10:50534929-50535212(+)$1	283	39	78	102.9615
cacacacacacacacacacacacacacacauacauacac	chrX:63409174-63409489(-)$1	315	95	134	97.6730
cacacacacacacacacacacacacacacacacacacac	chr1:36032109-36032356(+)$1	247	121	160	106.7115
cacacacacacacacacacacacacacacacacacacac	chr17:38296478-38296751(+)$1	273	149	188	106.7115
cacacacacacacacacacacacacacacacacacacac	chr7:99268573-99268948(-)$1	375	162	201	106.7115
cacacacacacacacacacacucucacacacacucacac	chr4:1018981-1019278(+)$1	297	73	112	92.7692
CCUacacacacacacacacacacacacacacacacacgc	chr19:41938660-41938952(-)$1	292	227	266	95.1730
cacacacacacaaacacauacacacacauacacacacac	chrX:79931738-79932007(-)$1	269	123	162	93.0576
CUcacacucauacacacacacacacacacgcacacacac	chr8:27660939-27661226(+)$1	287	116	155	88.3461
cacacacacacacacacacacacacacacacacacacac	chr3:38534164-38534482(+)$1	318	59	98	106.7115
CUCUcacacacacacacacacgcacacacacacacacaG	chr3:128532356-128532611(+)$1	255	68	107	89.2115
cacacacacacaaacacauacacacacauacacacacac	chrX:79931653-79931938(-)$1	285	54	93	93.0576
cacacacacacacacacacacacacacacaaacacacac	chr17:4618708-4619045(+)$1	337	282	321	102.2884
cacacacacacacacacacacacacacacacacacacac	chr5:112213509-112213809(-)$1	300	91	130	106.7115
cacacacacacacacacacacacacacacacacacacac	chr16:24230834-24231090(+)$1	256	143	182	106.7115
cacacacacacacacacacacacacacacacacacacac	chr16:24230890-24231136(+)$1	246	87	126	106.7115
GAUacacacacacacacacauauauauacacacacauac	chr1:52253785-52254008(+)$1	223	39	78	79.3076
cacacacacacucacacucacauacacacacacacacac	chr13:30779617-30779894(-)$1	277	103	142	93.0576
cacacacacacacacacacacacacacacacacacacac	chr6:42627242-42627519(+)$1	277	17	56	106.7115
cacacacacacacacacacacacacacacacacacacac	chr11:111609450-111609711(-)$1	261	63	102	106.7115
cacacacacacacacacacacacacacacacacacacac	chr16:20708813-20709102(+)$1	289	66	105	106.7115
cacacacacacacacacacacacacacacacacCACUUU	chr16:24230991-24231230(+)$1	239	0	39	80.7500
AAACcacacacacacaaacacacauacacacacacacac	chr15:65869730-65869961(+)$1	231	41	80	85.9423
GAUacacacacacacacacauauauauacacacacauac	chr1:52253763-52253976(+)$1	213	61	100	79.3076
Aacacacacacacacacacacacacacacacacacacac	chr10:50534854-50535129(+)$1	275	114	153	102.9615
cacacacacacacacacacacacacacacacacacacac	chr17:38296551-38296832(+)$1	281	76	115	106.7115
cacacacacacacacacacacacacacacacacacacac	chr13:30779875-30780141(-)$1	266	22	61	106.7115
cauacacacacacacacacacacacacacacacacacac	chr20:44512599-44512930(+)$1	331	142	181	104.0192
cacacacacacacaugcauacacacacacacacagccac	chr5:139494627-139494904(+)$1	277	127	166	84.0192
cacacacacacacacacacacacacacacacacacacac	chr2:203630693-203630917(+)$1	224	92	131	106.7115
UAUAUacacacacacacacacacacacacacacacacac	chr5:122165412-122165689(+)$1	277	53	92	95.4615
CUGacacacacacacacacacacacacacacacacacac	chr7:137560915-137561175(-)$1	260	57	96	99.1153
cacacacacacacacacacacacacacacacacacacac	chr13:30779941-30780185(-)$1	244	66	105	106.7115
cacacacacacacacacacacacacacacacacacacac	chrX:118750885-118751178(-)$1	293	67	106	106.7115
cacacacacacacacacacacacacacacacacagacac	chr22:38169842-38170129(+)$1	287	69	108	102.2884
cacacacacacacacacacacacacacacacacacacac	chr1:36032156-36032441(+)$1	285	74	113	106.7115
cacacacacacacacacacacacacacacaaacacacac	chr17:4618845-4619209(+)$1	364	145	184	102.2884
cacacacacacacacacacacacacacacacacacacac	chr10:96092120-96092421(-)$1	301	117	156	106.7115

#otherMatches

#Struct PSSM
AKKEEEEE:::::::::::::::::::::::::::::::	chr4:145031783-145032018(-)$1	235	36	75	87.4807
:::::::::::::::::::::::::::::::::::::::	chr15:40845942-40846178(-)$1	236	13	52	106.7115
ccc::::::::::::::::::::::::::::::::::::	chrX:118750980-118751196(-)$1	216	85	124	106.7115
:::::::::::::::::::::::::::::::::::::::	chr3:45636215-45636473(+)$1	258	56	95	106.7115
AKKEEEEE:::::::::::::::::::::::::::::::	chr4:145031818-145032050(-)$1	232	68	107	87.4807
}BB::::::::::::::::::::::::::::::::::::	chr20:37206230-37206567(+)$1	337	108	147	99.1153
:EEEEE::::::::::::::::::::::::::::::::B	chr12:102792754-102793073(-)$1	319	144	183	102.0961
bb[dddd++++++++++++++ccc+++++++++++++bb	chr3:128532285-128532534(+)$1	249	139	178	89.2115
eccc+++++++++++++++hhhhhhhh++++++++++++	chr1:52253776-52253985(+)$1	209	48	87	79.3076
LDDDD:cccooooooccc:::::::::::::::::::::	chr2:106510392-106510677(+)$1	285	45	84	86.0384
:::::::::::::::::::::::::::::::::::::::	chr16:4737459-4737770(+)$1	311	109	148	80.6538
:::::::::::::::::::::::::::::::::::::::	chr16:67209899-67210152(-)$1	253	130	169	106.7115
:::::::::::::::::::::::::::::::::::::::	chr16:67209797-67210092(-)$1	295	70	109	106.7115
nnnna:::::::::::::::::::::::::ddddppppp	chr11:72433023-72433350(-)$1	327	56	95	81.1346
:::::::::::::::::::::::::::::::::::::::	chr10:50534929-50535212(+)$1	283	39	78	102.9615
22ccc22bb:::::::::::::::::::::::DDDDMMM	chrX:63409174-63409489(-)$1	315	95	134	97.6730
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:36032109-36032356(+)$1	247	121	160	106.7115
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:38296478-38296751(+)$1	273	149	188	106.7115
cccdddd::::::::::::::::::::::::::::::::	chr7:99268573-99268948(-)$1	375	162	201	106.7115
HHHHHHHH::::::::::::eeeee[cccssssssssss	chr4:1018981-1019278(+)$1	297	73	112	92.7692
ddd::::::::::::::::::::::::::::::::::::	chr19:41938660-41938952(-)$1	292	227	266	95.1730
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chrX:79931738-79932007(-)$1	269	123	162	93.0576
ppppppccc::::::::::::::::::::::::::::::	chr8:27660939-27661226(+)$1	287	116	155	88.3461
eeeee::::::::::::::::::::::::::::::::::	chr3:38534164-38534482(+)$1	318	59	98	106.7115
F:::::::::::::::CCC{CCC:::::::::::::::c	chr3:128532356-128532611(+)$1	255	68	107	89.2115
:::::::::::::::::::::::::::::::::::::::	chrX:79931653-79931938(-)$1	285	54	93	93.0576
BBAZZZCCC::::::::::::::::::::::::::::::	chr17:4618708-4619045(+)$1	337	282	321	102.2884
ccc::::::::::::::::::::::::::::::::::::	chr5:112213509-112213809(-)$1	300	91	130	106.7115
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:24230834-24231090(+)$1	256	143	182	106.7115
b::::::::::::::::::::::::::::::::::::::	chr16:24230890-24231136(+)$1	246	87	126	106.7115
:::::::::::::::::::hhhhhhhh++++++++++++	chr1:52253785-52254008(+)$1	223	39	78	79.3076
^^dddd4444eeeeeEEEEE@@@@@@@@@@@@@DDDD//	chr13:30779617-30779894(-)$1	277	103	142	93.0576
::::::::::::::::::::::::::dddd%%%%%%bb[	chr6:42627242-42627519(+)$1	277	17	56	106.7115
ii]bb::::::::::::::::::::::::::::::::::	chr11:111609450-111609711(-)$1	261	63	102	106.7115
H::::::::::::::::::::::::::::::::::::::	chr16:20708813-20709102(+)$1	289	66	105	106.7115
::::::::::::::::::::::::::::DDDDQQQQQQQ	chr16:24230991-24231230(+)$1	239	0	39	80.7500
%%ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:65869730-65869961(+)$1	231	41	80	85.9423
eccc+++++++++++++++hhhhhhhh++++++++++++	chr1:52253763-52253976(+)$1	213	61	100	79.3076
:::::::::::::::::::::::::::::::::::::::	chr10:50534854-50535129(+)$1	275	114	153	102.9615
:::::::::::::::::::::::::::::::::::::::	chr17:38296551-38296832(+)$1	281	76	115	106.7115
:::::::::::::::::::::::::::::::::::::::	chr13:30779875-30780141(-)$1	266	22	61	106.7115
:::::::::::::::::::::::::::::::::::::::	chr20:44512599-44512930(+)$1	331	142	181	104.0192
d:::::::::::::::::::::::::DDDDYYEEEEE::	chr5:139494627-139494904(+)$1	277	127	166	84.0192
::::::::::::::::::::::::::::::::::::bb!	chr2:203630693-203630917(+)$1	224	92	131	106.7115
:::::::::::::::::::::::::::::::::::::::	chr5:122165412-122165689(+)$1	277	53	92	95.4615
::::::::::::::::::::::::::::::::cccoooo	chr7:137560915-137561175(-)$1	260	57	96	99.1153
HHHHH::::::::::::::::::::::::::::::::::	chr13:30779941-30780185(-)$1	244	66	105	106.7115
ccc::::::::::::::::::::::::::::DDDD{GGG	chrX:118750885-118751178(-)$1	293	67	106	106.7115
:::::::::::::::::::::::::::::::::::::::	chr22:38169842-38170129(+)$1	287	69	108	102.2884
GGG{BB:::::::::::::::::::::::::::::::::	chr1:36032156-36032441(+)$1	285	74	113	106.7115
:::::::::::::::::::::::::::::::::::::::	chr17:4618845-4619209(+)$1	364	145	184	102.2884
9999dddd:::::::::::::DDDD{BBQQQQQQQQCCC	chr10:96092120-96092421(-)$1	301	117	156	106.7115

#DB
(..(((((...............................	chr4:145031783-145032018(-)$1	1	36	75	87.4807
.......................................	chr15:40845942-40846178(-)$1	1	13	52	106.7115
)))....................................	chrX:118750980-118751196(-)$1	1	85	124	106.7115
.......................................	chr3:45636215-45636473(+)$1	1	56	95	106.7115
(..(((((...............................	chr4:145031818-145032050(-)$1	1	68	107	87.4807
.))....................................	chr20:37206230-37206567(+)$1	1	108	147	99.1153
.)))))................................(	chr12:102792754-102793073(-)$1	1	144	183	102.0961
((.((((..............(((.............((	chr3:128532285-128532534(+)$1	1	139	178	89.2115
((((...............((((((((............	chr1:52253776-52253985(+)$1	1	48	87	79.3076
.((((.(((......))).....................	chr2:106510392-106510677(+)$1	1	45	84	86.0384
.......................................	chr16:4737459-4737770(+)$1	1	109	148	80.6538
.......................................	chr16:67209899-67210152(-)$1	1	130	169	106.7115
.......................................	chr16:67209797-67210092(-)$1	1	70	109	106.7115
....).........................((((.....	chr11:72433023-72433350(-)$1	1	56	95	81.1346
.......................................	chr10:50534929-50535212(+)$1	1	39	78	102.9615
..)))..)).......................((((...	chrX:63409174-63409489(-)$1	1	95	134	97.6730
.......................................	chr1:36032109-36032356(+)$1	1	121	160	106.7115
.......................................	chr17:38296478-38296751(+)$1	1	149	188	106.7115
)))))))................................	chr7:99268573-99268948(-)$1	1	162	201	106.7115
((((((((............(((((.(((..........	chr4:1018981-1019278(+)$1	1	73	112	92.7692
)))....................................	chr19:41938660-41938952(-)$1	1	227	266	95.1730
......................................)	chrX:79931738-79932007(-)$1	1	123	162	93.0576
......)))..............................	chr8:27660939-27661226(+)$1	1	116	155	88.3461
)))))..................................	chr3:38534164-38534482(+)$1	1	59	98	106.7115
(...............(((.(((...............(	chr3:128532356-128532611(+)$1	1	68	107	89.2115
.......................................	chrX:79931653-79931938(-)$1	1	54	93	93.0576
)))...)))..............................	chr17:4618708-4619045(+)$1	1	282	321	102.2884
)))....................................	chr5:112213509-112213809(-)$1	1	91	130	106.7115
.......................................	chr16:24230834-24231090(+)$1	1	143	182	106.7115
)......................................	chr16:24230890-24231136(+)$1	1	87	126	106.7115
...................((((((((............	chr1:52253785-52254008(+)$1	1	39	78	79.3076
..))))....)))))))))).............))))..	chr13:30779617-30779894(-)$1	1	103	142	93.0576
..........................((((......((.	chr6:42627242-42627519(+)$1	1	17	56	106.7115
)).))..................................	chr11:111609450-111609711(-)$1	1	63	102	106.7115
(......................................	chr16:20708813-20709102(+)$1	1	66	105	106.7115
............................((((.......	chr16:24230991-24231230(+)$1	1	0	39	80.7500
..(((..................................	chr15:65869730-65869961(+)$1	1	41	80	85.9423
((((...............((((((((............	chr1:52253763-52253976(+)$1	1	61	100	79.3076
.......................................	chr10:50534854-50535129(+)$1	1	114	153	102.9615
.......................................	chr17:38296551-38296832(+)$1	1	76	115	106.7115
.......................................	chr13:30779875-30780141(-)$1	1	22	61	106.7115
.......................................	chr20:44512599-44512930(+)$1	1	142	181	104.0192
).........................))))..)))))..	chr5:139494627-139494904(+)$1	1	127	166	84.0192
....................................((.	chr2:203630693-203630917(+)$1	1	92	131	106.7115
.......................................	chr5:122165412-122165689(+)$1	1	53	92	95.4615
................................(((....	chr7:137560915-137561175(-)$1	1	57	96	99.1153
(((((..................................	chr13:30779941-30780185(-)$1	1	66	105	106.7115
)))............................((((.(((	chrX:118750885-118751178(-)$1	1	67	106	106.7115
.......................................	chr22:38169842-38170129(+)$1	1	69	108	102.2884
(((.((.................................	chr1:36032156-36032441(+)$1	1	74	113	106.7115
.......................................	chr17:4618845-4619209(+)$1	1	145	184	102.2884
....)))).............((((.((........(((	chr10:96092120-96092421(-)$1	1	117	156	106.7115

#PSSM
c : 0.71	C : 0.11	A : 0.07	G : 0.05	U : 0.03	
a : 0.75	A : 0.15	U : 0.07	C : 0.01	
c : 0.69	U : 0.11	u : 0.07	G : 0.03	C : 0.03	A : 0.03	
a : 0.90	U : 0.03	A : 0.03	C : 0.01	
c : 0.94	g : 0.01	A : 0.01	U : 0.01	
a : 0.98	A : 0.01	
c : 0.98	A : 0.01	
a : 0.96	A : 0.01	u : 0.01	
c : 0.98	A : 0.01	
a : 0.98	A : 0.01	
c : 0.96	U : 0.01	u : 0.01	
a : 0.98	u : 0.01	
c : 0.96	a : 0.03	
a : 1.00	
c : 0.96	u : 0.03	
a : 0.96	g : 0.03	
c : 0.96	u : 0.01	a : 0.01	
a : 0.96	g : 0.01	u : 0.01	
c : 0.94	u : 0.05	
a : 1.00	
c : 0.94	u : 0.05	
a : 0.94	g : 0.03	u : 0.01	
c : 0.90	u : 0.07	g : 0.01	
a : 0.98	u : 0.01	
c : 0.92	u : 0.07	
a : 1.00	
c : 0.90	u : 0.05	a : 0.03	
a : 1.00	
c : 0.96	u : 0.03	
a : 0.98	g : 0.01	
c : 0.92	a : 0.03	g : 0.01	u : 0.01	
a : 1.00	
c : 0.98	g : 0.01	
a : 0.94	u : 0.03	C : 0.01	
c : 0.92	g : 0.03	u : 0.01	A : 0.01	
a : 0.96	C : 0.01	c : 0.01	
c : 0.88	U : 0.05	u : 0.05	
a : 0.90	U : 0.05	u : 0.01	g : 0.01	
c : 0.90	U : 0.05	G : 0.03	

#score	5103.230769230777
#seq	52
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_UTR_m1_run1.nuc.txt

#NT
UGA	chr11:62566196-62566452(-)$1	256	20	23	9.0000
UGA	chr16:28847426-28847662(+)$1	236	18	21	9.0000
UGA	chr14:54421087-54421366(-)$1	279	13	16	9.0000
UGA	chr16:67977022-67977275(-)$1	253	51	54	9.0000
UGA	chr14:24114171-24114417(+)$1	246	24	27	9.0000
UGA	chr11:66394086-66394330(+)$1	244	1	4	9.0000
UGA	chr17:80193554-80193808(+)$1	254	31	34	9.0000
UGA	chr16:4863743-4864002(-)$1	259	47	50	9.0000
UGA	chr17:62498269-62498494(-)$1	225	29	32	9.0000
UGA	chr1:70687115-70687376(+)$1	261	166	169	9.0000
UGA	chr11:72534161-72534420(+)$1	259	110	113	9.0000
UGA	chr16:89805659-89805922(-)$1	263	149	152	9.0000
UGA	chr15:90349954-90350224(-)$1	270	7	10	9.0000
UGA	chr17:37883379-37883656(+)$1	277	28	31	9.0000
UGA	chr3:48670988-48671252(-)$1	264	17	20	9.0000
uga	chr14:24614890-24615199(-)$1	309	130	133	9.0000
UGA	chr17:7477394-7477630(+)$1	236	84	87	9.0000
UGA	chr3:184100631-184100872(+)$1	241	30	33	9.0000
UGA	chrX:128581116-128581365(-)$1	249	25	28	9.0000
UGA	chr3:15901024-15901321(-)$1	297	83	86	9.0000
UGA	chr5:172755102-172755394(-)$1	292	226	229	9.0000
UGA	chr19:54971742-54971991(+)$1	249	49	52	9.0000
UGA	chr16:89724493-89724758(+)$1	265	24	27	9.0000
UGA	chr17:42398546-42398801(-)$1	255	1	4	9.0000
UGA	chr14:21967359-21967672(-)$1	313	11	14	9.0000
UGA	chr17:73127285-73127556(-)$1	271	71	74	9.0000
UGA	chr6:31638709-31638988(+)$1	279	19	22	9.0000
UGA	chr16:2581166-2581421(+)$1	255	126	129	9.0000
UGA	chr11:61634375-61634656(+)$1	281	20	23	9.0000
UGA	chr3:49052722-49052989(+)$1	267	93	96	9.0000
UGA	chr16:3729708-3729964(-)$1	256	34	37	9.0000
UGA	chr17:2593182-2593453(-)$1	271	45	48	9.0000
UGA	chr22:32003726-32004024(+)$1	298	8	11	9.0000
Uga	chr20:62589038-62589274(-)$1	236	73	76	9.0000
UGA	chr11:85374568-85374811(-)$1	243	77	80	9.0000
UGA	chr17:7481323-7481559(+)$1	236	134	137	9.0000
UGA	chr17:79211180-79211444(-)$1	264	3	6	9.0000
UGA	chr1:25568833-25569128(-)$1	295	60	63	9.0000
UGA	chr17:56082934-56083222(-)$1	288	11	14	9.0000
UGA	chr5:52386506-52386748(+)$1	242	77	80	9.0000
UGA	chr2:216177027-216177307(+)$1	280	168	171	9.0000
UGA	chr9:19378848-19379096(-)$1	248	0	3	9.0000
UGA	chr17:7477430-7477656(+)$1	226	48	51	9.0000
UGA	chr11:61109873-61110111(+)$1	238	6	9	9.0000
UGA	chr6:31937133-31937369(+)$1	236	17	20	9.0000
UGA	chr5:179264827-179265087(-)$1	260	16	19	9.0000
UGA	chr14:23791212-23791416(+)$1	204	90	93	9.0000
UGA	chr12:54106375-54106641(-)$1	266	118	121	9.0000
UGA	chr3:49051481-49051733(+)$1	252	8	11	9.0000
UGA	chr19:2228265-2228507(+)$1	242	155	158	9.0000
UGA	chr17:7477038-7477283(+)$1	245	110	113	9.0000
UGA	chr1:2327059-2327308(+)$1	249	60	63	9.0000
UGA	chr14:24911581-24911869(-)$1	288	56	59	9.0000
UGA	chr20:57467358-57467634(+)$1	276	27	30	9.0000
UGA	chr3:58520198-58520513(-)$1	315	12	15	9.0000
UGA	chr17:7123741-7124002(+)$1	261	13	16	9.0000
UGA	chr19:5933405-5933653(-)$1	248	3	6	9.0000
UGA	chr20:36151576-36151858(-)$1	282	45	48	9.0000
UGA	chr17:7477340-7477585(+)$1	245	38	41	9.0000

#otherMatches

#Struct PSSM
JJJ	chr1:226053589-226053854(-)$1	265	27	30	9.0000
mmm	chr11:62566196-62566452(-)$1	256	20	23	9.0000
dnn	chr16:28847426-28847662(+)$1	236	18	21	9.0000
C::	chr14:54421087-54421366(-)$1	279	13	16	9.0000
qqc	chr16:67977022-67977275(-)$1	253	51	54	9.0000
HHL	chr14:24114171-24114417(+)$1	246	24	27	9.0000
:BB	chr11:66394086-66394330(+)$1	244	1	4	9.0000
ttt	chr17:80193554-80193808(+)$1	254	31	34	9.0000
GGL	chr16:4863743-4864002(-)$1	259	47	50	9.0000
cc3	chr17:62498269-62498494(-)$1	225	29	32	9.0000
ff!	chr1:70687115-70687376(+)$1	261	166	169	9.0000
MMM	chr11:72534161-72534420(+)$1	259	110	113	9.0000
]a]	chr16:89805659-89805922(-)$1	263	149	152	9.0000
ddd	chr15:90349954-90350224(-)$1	270	7	10	9.0000
fff	chr17:37883379-37883656(+)$1	277	28	31	9.0000
eoo	chr3:48670988-48671252(-)$1	264	17	20	9.0000
FFF	chr14:24614890-24615199(-)$1	309	130	133	9.0000
fff	chr17:7477394-7477630(+)$1	236	84	87	9.0000
ggg	chr3:184100631-184100872(+)$1	241	30	33	9.0000
hhh	chrX:128581116-128581365(-)$1	249	25	28	9.0000
III	chr3:15901024-15901321(-)$1	297	83	86	9.0000
:::	chr5:172755102-172755394(-)$1	292	226	229	9.0000
FFg	chr19:54971742-54971991(+)$1	249	49	52	9.0000
lll	chr16:89724493-89724758(+)$1	265	24	27	9.0000
EEE	chr17:42398546-42398801(-)$1	255	1	4	9.0000
fff	chr14:21967359-21967672(-)$1	313	11	14	9.0000
ttt	chr17:73127285-73127556(-)$1	271	71	74	9.0000
eee	chr6:31638709-31638988(+)$1	279	19	22	9.0000
:::	chr16:2581166-2581421(+)$1	255	126	129	9.0000
hh[	chr11:61634375-61634656(+)$1	281	20	23	9.0000
:::	chr3:49052722-49052989(+)$1	267	93	96	9.0000
ee:	chr16:3729708-3729964(-)$1	256	34	37	9.0000
eee	chr17:2593182-2593453(-)$1	271	45	48	9.0000
[gg	chr22:32003726-32004024(+)$1	298	8	11	9.0000
fEE	chr20:62589038-62589274(-)$1	236	73	76	9.0000
ee!	chr11:85374568-85374811(-)$1	243	77	80	9.0000
cmm	chr17:7481323-7481559(+)$1	236	134	137	9.0000
:==	chr17:79211180-79211444(-)$1	264	3	6	9.0000
:ee	chr1:25568833-25569128(-)$1	295	60	63	9.0000
FFF	chr17:56082934-56083222(-)$1	288	11	14	9.0000
iii	chr5:52386506-52386748(+)$1	242	77	80	9.0000
#ee	chr2:216177027-216177307(+)$1	280	168	171	9.0000
eee	chr9:19378848-19379096(-)$1	248	0	3	9.0000
fff	chr17:7477430-7477656(+)$1	226	48	51	9.0000
b[c	chr11:61109873-61110111(+)$1	238	6	9	9.0000
:::	chr6:31937133-31937369(+)$1	236	17	20	9.0000
{GG	chr5:179264827-179265087(-)$1	260	16	19	9.0000
mmm	chr14:23791212-23791416(+)$1	204	90	93	9.0000
cpp	chr12:54106375-54106641(-)$1	266	118	121	9.0000
:::	chr3:49051481-49051733(+)$1	252	8	11	9.0000
VVV	chr19:2228265-2228507(+)$1	242	155	158	9.0000
:::	chr17:7477038-7477283(+)$1	245	110	113	9.0000
gg"	chr1:2327059-2327308(+)$1	249	60	63	9.0000
Acc	chr14:24911581-24911869(-)$1	288	56	59	9.0000
c##	chr20:57467358-57467634(+)$1	276	27	30	9.0000
EEE	chr3:58520198-58520513(-)$1	315	12	15	9.0000
EEE	chr17:7123741-7124002(+)$1	261	13	16	9.0000
:::	chr19:5933405-5933653(-)$1	248	3	6	9.0000
GGG	chr20:36151576-36151858(-)$1	282	45	48	9.0000
CCC	chr17:7477340-7477585(+)$1	245	38	41	9.0000

#DB
(((	chr1:226053589-226053854(-)$1	1	27	30	9.0000
...	chr11:62566196-62566452(-)$1	1	20	23	9.0000
(..	chr16:28847426-28847662(+)$1	1	18	21	9.0000
(..	chr14:54421087-54421366(-)$1	1	13	16	9.0000
..)	chr16:67977022-67977275(-)$1	1	51	54	9.0000
((.	chr14:24114171-24114417(+)$1	1	24	27	9.0000
.((	chr11:66394086-66394330(+)$1	1	1	4	9.0000
...	chr17:80193554-80193808(+)$1	1	31	34	9.0000
((.	chr16:4863743-4864002(-)$1	1	47	50	9.0000
)).	chr17:62498269-62498494(-)$1	1	29	32	9.0000
((.	chr1:70687115-70687376(+)$1	1	166	169	9.0000
...	chr11:72534161-72534420(+)$1	1	110	113	9.0000
.).	chr16:89805659-89805922(-)$1	1	149	152	9.0000
(((	chr15:90349954-90350224(-)$1	1	7	10	9.0000
(((	chr17:37883379-37883656(+)$1	1	28	31	9.0000
(..	chr3:48670988-48671252(-)$1	1	17	20	9.0000
(((	chr14:24614890-24615199(-)$1	1	130	133	9.0000
(((	chr17:7477394-7477630(+)$1	1	84	87	9.0000
)))	chr3:184100631-184100872(+)$1	1	30	33	9.0000
(((	chrX:128581116-128581365(-)$1	1	25	28	9.0000
(((	chr3:15901024-15901321(-)$1	1	83	86	9.0000
...	chr5:172755102-172755394(-)$1	1	226	229	9.0000
))(	chr19:54971742-54971991(+)$1	1	49	52	9.0000
...	chr16:89724493-89724758(+)$1	1	24	27	9.0000
(((	chr17:42398546-42398801(-)$1	1	1	4	9.0000
(((	chr14:21967359-21967672(-)$1	1	11	14	9.0000
...	chr17:73127285-73127556(-)$1	1	71	74	9.0000
(((	chr6:31638709-31638988(+)$1	1	19	22	9.0000
...	chr16:2581166-2581421(+)$1	1	126	129	9.0000
((.	chr11:61634375-61634656(+)$1	1	20	23	9.0000
...	chr3:49052722-49052989(+)$1	1	93	96	9.0000
)).	chr16:3729708-3729964(-)$1	1	34	37	9.0000
(((	chr17:2593182-2593453(-)$1	1	45	48	9.0000
.((	chr22:32003726-32004024(+)$1	1	8	11	9.0000
)((	chr20:62589038-62589274(-)$1	1	73	76	9.0000
((.	chr11:85374568-85374811(-)$1	1	77	80	9.0000
(..	chr17:7481323-7481559(+)$1	1	134	137	9.0000
.((	chr17:79211180-79211444(-)$1	1	3	6	9.0000
.((	chr1:25568833-25569128(-)$1	1	60	63	9.0000
(((	chr17:56082934-56083222(-)$1	1	11	14	9.0000
)))	chr5:52386506-52386748(+)$1	1	77	80	9.0000
.((	chr2:216177027-216177307(+)$1	1	168	171	9.0000
(((	chr9:19378848-19379096(-)$1	1	0	3	9.0000
(((	chr17:7477430-7477656(+)$1	1	48	51	9.0000
(.(	chr11:61109873-61110111(+)$1	1	6	9	9.0000
...	chr6:31937133-31937369(+)$1	1	17	20	9.0000
.((	chr5:179264827-179265087(-)$1	1	16	19	9.0000
...	chr14:23791212-23791416(+)$1	1	90	93	9.0000
(..	chr12:54106375-54106641(-)$1	1	118	121	9.0000
...	chr3:49051481-49051733(+)$1	1	8	11	9.0000
...	chr19:2228265-2228507(+)$1	1	155	158	9.0000
...	chr17:7477038-7477283(+)$1	1	110	113	9.0000
((.	chr1:2327059-2327308(+)$1	1	60	63	9.0000
(((	chr14:24911581-24911869(-)$1	1	56	59	9.0000
(..	chr20:57467358-57467634(+)$1	1	27	30	9.0000
(((	chr3:58520198-58520513(-)$1	1	12	15	9.0000
(((	chr17:7123741-7124002(+)$1	1	13	16	9.0000
...	chr19:5933405-5933653(-)$1	1	3	6	9.0000
(((	chr20:36151576-36151858(-)$1	1	45	48	9.0000
(((	chr17:7477340-7477585(+)$1	1	38	41	9.0000

#PSSM
U : 0.98	u : 0.01	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	

#score	540.0000000000002
#seq	60
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_transcript_m3_run1.nuc.txt

#NT
GGAGGUGGGGG	chr8:145025651-145025948(-)$1	297	147	158	18.2173
GGGGCUGGUGG	chr19:879115-879384(-)$1	269	9	20	14.1956
ggagccgcggc	chr6:149638676-149638987(+)$1	311	34	45	15.9347
GGAGCUGCAGG	chr2:95770288-95770536(-)$1	248	142	153	13.8695
ggagccggggg	chr8:71314982-71315239(-)$1	257	121	132	23.6521
GGAGCGGGGGG	chr8:103667032-103667325(-)$1	293	134	145	21.2608
ggaggccgggg	chr16:8959902-8960172(-)$1	270	103	114	17.3478
GGAgccgggcg	chr1:245026395-245026616(-)$1	221	185	196	20.6086
GGAGGCUGGGG	chr10:102758870-102759104(+)$1	234	27	38	16.8043
GGAGCCCAGGG	chr7:158154209-158154450(-)$1	241	202	213	16.9130
GGGGCCGGGGC	chr19:4059868-4060145(-)$1	277	159	170	16.2608
GGGGCUGGGGU	chr19:879184-879461(-)$1	277	24	35	14.1956
GGAGUCGGGGC	chr6:108883032-108883338(+)$1	306	157	168	16.0434
GGAGCCGGGCG	chr5:179248447-179248780(+)$1	333	129	140	20.6086
GGCGCCGGGGG	chr11:32915025-32915254(+)$1	229	185	196	19.9565
AGAGCCGGGGG	chr1:245026573-245026830(-)$1	257	165	176	19.0869
GGAGCCCGGCG	chr17:45726571-45726880(-)$1	309	43	54	17.7826
GGAGCCGGCGG	chr17:70118066-70118380(+)$1	314	8	19	19.9565
GGCGCCAGGGG	chr19:42757593-42757868(-)$1	275	1	12	16.3695
ggaggaggggg	chr2:20550261-20550595(-)$1	334	67	78	17.3478
GGAGAUGGCGG	chr1:201123359-201123658(-)$1	299	268	279	14.1956
GGAGCCGCGGG	chr7:77166718-77166977(+)$1	259	11	22	19.7391
GAAGCCGGGCG	chr1:1821592-1821865(-)$1	273	168	179	15.8260
CGAGCUGGGAG	chr14:54420437-54420692(-)$1	255	169	180	14.0869
GGAGGCGAGGG	chr2:32582836-32583108(+)$1	272	133	144	16.2608
GGAGCGCGAGG	chr2:676667-676969(-)$1	302	87	98	14.5217
GGAGCGGGGAG	chr2:178077616-178077883(+)$1	267	44	55	18.1086
cgagcccgggg	chr12:7037284-7037523(+)$1	239	7	18	16.3695
GGAGCUGGGAG	chr19:940341-940624(+)$1	283	106	117	18.5434
GGAGCGGGGAG	chr19:2270278-2270549(+)$1	271	47	58	18.1086
ggagcugggag	chr19:35496234-35496490(+)$1	256	121	132	18.5434
GGAGCCGGGGU	chr16:30959244-30959523(+)$1	279	136	147	19.7391
GGAGUUGGGGG	chr16:88545178-88545428(+)$1	250	41	52	17.8913
GGAGCCUAGGG	chr21:45734853-45735124(+)$1	271	105	116	16.3695
ggagcgcgggg	chr21:46493859-46494147(+)$1	288	135	146	18.4347
GGAGCCGGCGG	chr17:70117867-70118123(+)$1	256	207	218	19.9565
ggggccguggg	chr16:89556056-89556283(-)$1	227	37	48	15.9347
GGUGCCCGGGG	chr11:819987-820262(+)$1	275	118	129	17.0217
GGAGCCGGGCU	chr17:41623230-41623485(+)$1	255	7	18	16.6956
GGAGCUGGGUG	chr9:137308235-137308502(+)$1	267	109	120	18.1086
GGUGCCGGGGC	chr6:170123632-170123902(-)$1	270	10	21	16.0434
GGCGACGGGGG	chr13:113764727-113764982(+)$1	255	89	100	16.1521
GGAGCAGGGGG	chr20:1165420-1165678(-)$1	258	86	97	20.8260
GGAGCCCGCGG	chr13:92000161-92000428(+)$1	267	5	16	17.1304
GGAGCCUGGCG	chr14:32546762-32547036(+)$1	274	18	29	17.2391

#otherMatches

#Struct PSSM
444bb333eee	chr6:111136175-111136406(-)$1	231	105	116	17.3478
JJJJJJJJddd	chr8:145025651-145025948(-)$1	297	147	158	18.2173
[a!!eeeeeaq	chr19:879115-879384(-)$1	269	9	20	14.1956
llldddd]a]a	chr6:149638676-149638987(+)$1	311	34	45	15.9347
FFFFCCC}CCC	chr2:95770288-95770536(-)$1	248	142	153	13.8695
]a]ccc]bb]b	chr8:71314982-71315239(-)$1	257	121	132	23.6521
]eeeeeccc44	chr8:103667032-103667325(-)$1	293	134	145	21.2608
fff::eeeee[	chr16:8959902-8960172(-)$1	270	103	114	17.3478
iiiiiii22gg	chr1:245026395-245026616(-)$1	221	185	196	20.6086
JJJJJJJJJJJ	chr10:102758870-102759104(+)$1	234	27	38	16.8043
iiiiiii]ddd	chr7:158154209-158154450(-)$1	241	202	213	16.9130
ppgggggggff	chr19:4059868-4060145(-)$1	277	159	170	16.2608
a[dddd[a!!e	chr19:879184-879461(-)$1	277	24	35	14.1956
======:::::	chr6:108883032-108883338(+)$1	306	157	168	16.0434
}GGGGGGGCCC	chr5:179248447-179248780(+)$1	333	129	140	20.6086
]a]dddd]iii	chr11:32915025-32915254(+)$1	229	185	196	19.9565
mmeeeeeeeee	chr1:245026573-245026830(-)$1	257	165	176	19.0869
NNNNCCC{BB{	chr17:45726571-45726880(-)$1	309	43	54	17.7826
a"""eeeeeqq	chr17:70118066-70118380(+)$1	314	8	19	19.9565
::DDDD:EEEE	chr19:42757593-42757868(-)$1	275	1	12	16.3695
f333ddddDDD	chr2:20550261-20550595(-)$1	334	67	78	17.3478
333========	chr1:201123359-201123658(-)$1	299	268	279	14.1956
GGGDDDD{DDD	chr7:77166718-77166977(+)$1	259	11	22	19.7391
5555dddd]hh	chr1:1821592-1821865(-)$1	273	168	179	15.8260
"bb!!dddd[a	chr14:54420437-54420692(-)$1	255	169	180	14.0869
ee$$$$$ccc[	chr2:32582836-32583108(+)$1	272	133	144	16.2608
]a]bb]bba]b	chr2:676667-676969(-)$1	302	87	98	14.5217
iiiiiiddddf	chr2:178077616-178077883(+)$1	267	44	55	18.1086
b"""ddddooo	chr12:7037284-7037523(+)$1	239	7	18	16.3695
BKKJJJJJJJJ	chr19:940341-940624(+)$1	283	106	117	18.5434
mmmdddd]a]f	chr19:2270278-2270549(+)$1	271	47	58	18.1086
FFFFFEEEEEM	chr19:35496234-35496490(+)$1	256	121	132	18.5434
mmmmbb]dddd	chr16:30959244-30959523(+)$1	279	136	147	19.7391
FFFFFFKKEEE	chr16:88545178-88545428(+)$1	250	41	52	17.8913
cccccbb]a]e	chr21:45734853-45735124(+)$1	271	105	116	16.3695
IIIIIIIIIBB	chr21:46493859-46494147(+)$1	288	135	146	18.4347
ggEEEEE}BB}	chr17:70117867-70118123(+)$1	256	207	218	19.9565
ccc[bbmmmmb	chr16:89556056-89556283(-)$1	227	37	48	15.9347
cccceeeee:h	chr11:819987-820262(+)$1	275	118	129	17.0217
DDccc[eeeee	chr17:41623230-41623485(+)$1	255	7	18	16.6956
IIIIIIIIIYY	chr9:137308235-137308502(+)$1	267	109	120	18.1086
dd::EEEEE{D	chr6:170123632-170123902(-)$1	270	10	21	16.0434
cccbb[iiiii	chr13:113764727-113764982(+)$1	255	89	100	16.1521
a[a[ammmma]	chr20:1165420-1165678(-)$1	258	86	97	20.8260
ffff$$$$$ee	chr13:92000161-92000428(+)$1	267	5	16	17.1304
ALLLJJJJJJJ	chr14:32546762-32547036(+)$1	274	18	29	17.2391

#DB
...))...)))	chr6:111136175-111136406(-)$1	1	105	116	17.3478
(((((((((((	chr8:145025651-145025948(-)$1	1	147	158	18.2173
.(..((((((.	chr19:879115-879384(-)$1	1	9	20	14.1956
...)))).).)	chr6:149638676-149638987(+)$1	1	34	45	15.9347
))))))).)))	chr2:95770288-95770536(-)$1	1	142	153	13.8695
.).))).)).)	chr8:71314982-71315239(-)$1	1	121	132	23.6521
.))))))))..	chr8:103667032-103667325(-)$1	1	134	145	21.2608
)))..(((((.	chr16:8959902-8960172(-)$1	1	103	114	17.3478
)))))))..))	chr1:245026395-245026616(-)$1	1	185	196	20.6086
(((((((((((	chr10:102758870-102759104(+)$1	1	27	38	16.8043
))))))).)))	chr7:158154209-158154450(-)$1	1	202	213	16.9130
..)))))))((	chr19:4059868-4060145(-)$1	1	159	170	16.2608
(.((((.(..(	chr19:879184-879461(-)$1	1	24	35	14.1956
)))))).....	chr6:108883032-108883338(+)$1	1	157	168	16.0434
.))))))))))	chr5:179248447-179248780(+)$1	1	129	140	20.6086
.).)))).)))	chr11:32915025-32915254(+)$1	1	185	196	19.9565
..)))))))))	chr1:245026573-245026830(-)$1	1	165	176	19.0869
....(((.((.	chr17:45726571-45726880(-)$1	1	43	54	17.7826
(...(((((..	chr17:70118066-70118380(+)$1	1	8	19	19.9565
..((((.((((	chr19:42757593-42757868(-)$1	1	1	12	16.3695
)...))))(((	chr2:20550261-20550595(-)$1	1	67	78	17.3478
...))))))))	chr1:201123359-201123658(-)$1	1	268	279	14.1956
(((((((.(((	chr7:77166718-77166977(+)$1	1	11	22	19.7391
....)))).))	chr1:1821592-1821865(-)$1	1	168	179	15.8260
.((..((((.(	chr14:54420437-54420692(-)$1	1	169	180	14.0869
((.....(((.	chr2:32582836-32583108(+)$1	1	133	144	16.2608
.).)).))).)	chr2:676667-676969(-)$1	1	87	98	14.5217
(((((((((((	chr2:178077616-178077883(+)$1	1	44	55	18.1086
(...((((...	chr12:7037284-7037523(+)$1	1	7	18	16.3695
(..((((((((	chr19:940341-940624(+)$1	1	106	117	18.5434
...)))).).)	chr19:2270278-2270549(+)$1	1	47	58	18.1086
((((((((((.	chr19:35496234-35496490(+)$1	1	121	132	18.5434
....)).))))	chr16:30959244-30959523(+)$1	1	136	147	19.7391
((((((..(((	chr16:88545178-88545428(+)$1	1	41	52	17.8913
))))))).).)	chr21:45734853-45735124(+)$1	1	105	116	16.3695
(((((((((((	chr21:46493859-46494147(+)$1	1	135	146	18.4347
))))))).)).	chr17:70117867-70118123(+)$1	1	207	218	19.9565
(((.((....)	chr16:89556056-89556283(-)$1	1	37	48	15.9347
))))))))).(	chr11:819987-820262(+)$1	1	118	129	17.0217
(((((.(((((	chr17:41623230-41623485(+)$1	1	7	18	16.6956
)))))))))..	chr9:137308235-137308502(+)$1	1	109	120	18.1086
))..(((((.(	chr6:170123632-170123902(-)$1	1	10	21	16.0434
)))((.(((((	chr13:113764727-113764982(+)$1	1	89	100	16.1521
(.(.(....).	chr20:1165420-1165678(-)$1	1	86	97	20.8260
((((.....((	chr13:92000161-92000428(+)$1	1	5	16	17.1304
(...(((((((	chr14:32546762-32547036(+)$1	1	18	29	17.2391

#PSSM
G : 0.78	g : 0.15	A : 0.02	C : 0.02	c : 0.02	
G : 0.80	g : 0.17	A : 0.02	
A : 0.65	a : 0.15	G : 0.06	C : 0.06	U : 0.04	g : 0.02	
G : 0.80	g : 0.19	
C : 0.65	c : 0.15	G : 0.06	g : 0.04	U : 0.04	A : 0.04	
C : 0.47	U : 0.19	c : 0.13	G : 0.10	a : 0.02	u : 0.02	g : 0.02	A : 0.02	
G : 0.60	g : 0.13	C : 0.10	c : 0.06	U : 0.06	A : 0.02	
G : 0.69	g : 0.15	A : 0.06	C : 0.04	c : 0.02	u : 0.02	
G : 0.63	g : 0.19	C : 0.08	U : 0.04	A : 0.04	
G : 0.58	g : 0.15	C : 0.10	A : 0.08	c : 0.02	a : 0.02	U : 0.02	
G : 0.67	g : 0.17	C : 0.06	U : 0.06	c : 0.02	

#score	805.6086956521734
#seq	46
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_UTR_m1_run1.nuc.txt

#NT
UUCUCUUUUCUUUGUGU	chr19:54972869-54973120(+)$1	251	47	64	20.8000
UUCUUUUCUUUUUUUCC	chr6:170060689-170060969(-)$1	280	81	98	25.5000
CUCUUUUUUUUUUUUUC	chr2:152293238-152293500(+)$1	262	79	96	27.7000
UUCUGAUUUUUUUUUCC	chr19:54972761-54972991(+)$1	230	34	51	29.0000
AUUUGCUUUUCUUUUUA	chr2:198284837-198285065(-)$1	228	4	21	19.6000
UACUGCUUUAGUUUUUU	chr14:75302564-75302821(+)$1	257	4	21	20.6000
uuuuguuuuuuuuuuug	chr9:32985881-32986135(-)$1	254	78	95	28.4000
UGGUGCUUUUUUCUUUC	chr11:3765719-3766002(-)$1	283	91	108	19.4000
UUCUCAAUUUUUUUUCA	chr8:42177005-42177280(+)$1	275	79	96	22.9000
UUCAGCUUUUUUCUUUU	chr6:160169485-160169763(+)$1	278	100	117	24.4000
UUCAAUUUUUUUUUUAA	chrX:122735455-122735716(-)$1	261	153	170	22.5000
UGCUUAUUUUUUAUUUA	chr2:198283175-198283437(-)$1	262	72	89	22.3000
UUCUUACCUUUUUUUCU	chr4:159093913-159094186(-)$1	273	87	104	22.8000
UUUUGCUUUUUUUUUAA	chr13:76431935-76432197(+)$1	262	232	249	24.3000
UUCUUGUUUUUUUUCCG	chr1:71529458-71529739(-)$1	281	189	206	23.0000
uuuuuuuuuuuuuuuuu	chr5:33453287-33453533(+)$1	246	81	98	30.6000
UUUUUUUUUUUUUUUCC	chr2:234178535-234178781(+)$1	246	89	106	26.5000
UACUCUUUUUUUUUUUU	chr1:109855965-109856189(-)$1	224	86	103	28.4000
CUCUGUUUUGUUUUUCA	chr11:10879326-10879588(-)$1	262	90	107	21.5000
AUCuuuuuuuuuuuuuu	chr21:18940397-18940606(+)$1	209	43	60	29.8000
GUGUGAUUUUUUUUUUU	chr11:85374452-85374735(-)$1	283	247	264	25.6000
UUCUUUUUCUUUCUUUU	chr10:5762401-5762717(+)$1	316	291	308	25.6000
UUCUGUCCUUCUUUUUC	chr6:31625690-31625932(+)$1	242	117	134	20.1000
UUCUAAUUUUUUUUCCU	chr14:74424734-74424979(+)$1	245	80	97	25.5000
UGCUGAUUUUCUUUUCU	chr12:57883875-57884129(+)$1	254	84	101	23.3000
UUCUAAUUAUCUUUUUU	chr4:107115776-107116045(-)$1	269	73	90	23.5000
UACUCAUUUUUUUUCUU	chrX:102933362-102933681(-)$1	319	77	94	23.4000
uucuuuuuuuuuuuuuc	chr4:77996838-77997125(-)$1	287	62	79	31.6000
uucuuuuuuuuuuuuuc	chr4:77996925-77997143(-)$1	218	80	97	31.6000
GUAUAAuuuuuuuuuuu	chr12:102124186-102124440(+)$1	254	77	94	24.0000
UCCUUUUUUUUUUUUUU	chr8:30567271-30567526(-)$1	255	82	99	29.5000
uucuguuuuguuuuggg	chr19:52597087-52597367(-)$1	280	97	114	20.1000
UUCUUUUUAUUUUUUCU	chr20:62559581-62559860(+)$1	279	84	101	27.4000
uuuuguuuuuuuuuugu	chr16:31199527-31199815(+)$1	288	78	95	28.1000
UUCUGUCUUUUUUUUUU	chr16:30711824-30712127(+)$1	303	77	94	30.1000
UUCUUCCUUUUCUUUUU	chr6:150048184-150048448(-)$1	264	88	105	24.0000
UUGUUGUUUUGUUUUUU	chr16:71841913-71842183(-)$1	270	74	91	24.0000
CUCUGAUUUUUCUUUUU	chr8:22269333-22269559(+)$1	226	55	72	24.6000
UUCUGCUCUAUUCUUUU	chr2:209169824-209170085(+)$1	261	233	250	20.8000
UUCUACGUUUUUAUUUU	chr19:54972210-54972440(+)$1	230	69	86	23.1000
UUCUGCUUUUCUUUUUU	chr1:185275869-185276130(-)$1	261	169	186	29.0000
UUCUGAUUUUUUUUUCC	chr19:54972704-54972961(+)$1	257	91	108	29.0000
UUCUAAUGCuuuuuuuu	chr2:207014487-207014754(-)$1	267	63	80	22.9000
uucuuuuuuuuuuuuuu	chr12:72004729-72004985(-)$1	256	83	100	33.7000
UUUUGCUUUUUUUCCUU	chr16:75033359-75033588(+)$1	229	68	85	21.0000
UUCUCUUUUUUUUGUGG	chr14:39746029-39746286(+)$1	257	208	225	22.6000
UUCUUCGUUUUUCUUUG	chr2:219613459-219613688(+)$1	229	25	42	22.1000
AUCUGUUUUAUUUUUCU	chr3:132297752-132298014(-)$1	262	231	248	24.0000
uucuuuuuuuuuuuuuu	chr12:123779013-123779286(-)$1	273	75	92	33.7000

#otherMatches

#Struct PSSM
]ccc22eeeee>>>>>>	chr1:151196607-151196861(+)$1	254	86	103	25.1000
zzzzzzzzzzzzddddd	chr19:54972869-54973120(+)$1	251	47	64	20.8000
^^^^^^^^^^^^^^^^^	chr6:170060689-170060969(-)$1	280	81	98	25.5000
:::::::::::::::::	chr2:152293238-152293500(+)$1	262	79	96	27.7000
qqccc::::::::::::	chr19:54972761-54972991(+)$1	230	34	51	29.0000
hhhhhh+++++++++++	chr2:198284837-198285065(-)$1	228	4	21	19.6000
::::gggggggoooooo	chr14:75302564-75302821(+)$1	257	4	21	20.6000
GGGGG{DDDDLLLEEEE	chr9:32985881-32986135(-)$1	254	78	95	28.4000
c]eeeee:::::::::e	chr11:3765719-3766002(-)$1	283	91	108	19.4000
iiii))))))))))fff	chr8:42177005-42177280(+)$1	275	79	96	22.9000
:::ccc^^^^^^^^^^^	chr6:160169485-160169763(+)$1	278	100	117	24.4000
####ddddpppppppdd	chrX:122735455-122735716(-)$1	261	153	170	22.5000
EEEEE{GGGGGGG{CCC	chr2:198283175-198283437(-)$1	262	72	89	22.3000
!ggggggg+++++++++	chr4:159093913-159094186(-)$1	273	87	104	22.8000
hhhhvvvvvvvvvvvvv	chr13:76431935-76432197(+)$1	262	232	249	24.3000
nnnnnccc4444=====	chr1:71529458-71529739(-)$1	281	189	206	23.0000
ee^^^^^^^^^^^^^^^	chr5:33453287-33453533(+)$1	246	81	98	30.6000
=====::::::::dddd	chr2:234178535-234178781(+)$1	246	89	106	26.5000
:::::::::::::::::	chr1:109855965-109856189(-)$1	224	86	103	28.4000
eee:=============	chr11:10879326-10879588(-)$1	262	90	107	21.5000
dddd>>>>>>>>>>>>>	chr21:18940397-18940606(+)$1	209	43	60	29.8000
dddd:::::::::::::	chr11:85374452-85374735(-)$1	283	247	264	25.6000
ddd::::::::::::::	chr10:5762401-5762717(+)$1	316	291	308	25.6000
rrrrdddd:::::::::	chr6:31625690-31625932(+)$1	242	117	134	20.1000
::::::::::::::::b	chr14:74424734-74424979(+)$1	245	80	97	25.5000
JJJJJJJ:::::::eee	chr12:57883875-57884129(+)$1	254	84	101	23.3000
:::::::::::::::::	chr4:107115776-107116045(-)$1	269	73	90	23.5000
DDD{BBJJJJJJJJJJJ	chrX:102933362-102933681(-)$1	319	77	94	23.4000
:::::::::::::::::	chr4:77996838-77997125(-)$1	287	62	79	31.6000
^^^^^^^^^^^^^^^^^	chr4:77996925-77997143(-)$1	218	80	97	31.6000
dd:::::::::::::::	chr12:102124186-102124440(+)$1	254	77	94	24.0000
dddd:::::::::::::	chr8:30567271-30567526(-)$1	255	82	99	29.5000
55ahhhhhhhh:::===	chr19:52597087-52597367(-)$1	280	97	114	20.1000
:::::::ffffffpppp	chr20:62559581-62559860(+)$1	279	84	101	27.4000
JJJJJJJJJJJJJJJJJ	chr16:31199527-31199815(+)$1	288	78	95	28.1000
:::::::::::::::::	chr16:30711824-30712127(+)$1	303	77	94	30.1000
===========vvvvvv	chr6:150048184-150048448(-)$1	264	88	105	24.0000
22dddd:::::::::::	chr16:71841913-71842183(-)$1	270	74	91	24.0000
ppppccc::::::::::	chr8:22269333-22269559(+)$1	226	55	72	24.6000
:::::::::::::::::	chr2:209169824-209170085(+)$1	261	233	250	20.8000
zzzzzzzzzzzzzzfff	chr19:54972210-54972440(+)$1	230	69	86	23.1000
eeee]bbffffff::::	chr1:185275869-185276130(-)$1	261	169	186	29.0000
eee::::::::::::::	chr19:54972704-54972961(+)$1	257	91	108	29.0000
mccc333eeeee:::::	chr2:207014487-207014754(-)$1	267	63	80	22.9000
]eeeee:::::::::::	chr12:72004729-72004985(-)$1	256	83	100	33.7000
HHHHHHHH:::::::::	chr16:75033359-75033588(+)$1	229	68	85	21.0000
[cccgggggggmmmmgg	chr14:39746029-39746286(+)$1	257	208	225	22.6000
hhhhhhhh::::=====	chr2:219613459-219613688(+)$1	229	25	42	22.1000
????CCCYYBB}DDDD:	chr3:132297752-132298014(-)$1	262	231	248	24.0000
:::::::::::::::::	chr12:123779013-123779286(-)$1	273	75	92	33.7000

#DB
.)))..)))))......	chr1:151196607-151196861(+)$1	1	86	103	25.1000
............)))))	chr19:54972869-54973120(+)$1	1	47	64	20.8000
.................	chr6:170060689-170060969(-)$1	1	81	98	25.5000
.................	chr2:152293238-152293500(+)$1	1	79	96	27.7000
..)))............	chr19:54972761-54972991(+)$1	1	34	51	29.0000
((((((...........	chr2:198284837-198285065(-)$1	1	4	21	19.6000
....(((((((......	chr14:75302564-75302821(+)$1	1	4	21	20.6000
(((((.((((...((((	chr9:32985881-32986135(-)$1	1	78	95	28.4000
).))))).........(	chr11:3765719-3766002(-)$1	1	91	108	19.4000
((((..........(((	chr8:42177005-42177280(+)$1	1	79	96	22.9000
...(((...........	chr6:160169485-160169763(+)$1	1	100	117	24.4000
....((((.......))	chrX:122735455-122735716(-)$1	1	153	170	22.5000
(((((.(((((((.(((	chr2:198283175-198283437(-)$1	1	72	89	22.3000
.(((((((.........	chr4:159093913-159094186(-)$1	1	87	104	22.8000
((((.............	chr13:76431935-76432197(+)$1	1	232	249	24.3000
.....)))....)))))	chr1:71529458-71529739(-)$1	1	189	206	23.0000
((...............	chr5:33453287-33453533(+)$1	1	81	98	30.6000
)))))........((((	chr2:234178535-234178781(+)$1	1	89	106	26.5000
.................	chr1:109855965-109856189(-)$1	1	86	103	28.4000
))).(((((((((((((	chr11:10879326-10879588(-)$1	1	90	107	21.5000
)))).............	chr21:18940397-18940606(+)$1	1	43	60	29.8000
)))).............	chr11:85374452-85374735(-)$1	1	247	264	25.6000
)))..............	chr10:5762401-5762717(+)$1	1	291	308	25.6000
....)))).........	chr6:31625690-31625932(+)$1	1	117	134	20.1000
................(	chr14:74424734-74424979(+)$1	1	80	97	25.5000
(((((((.......(((	chr12:57883875-57884129(+)$1	1	84	101	23.3000
.................	chr4:107115776-107116045(-)$1	1	73	90	23.5000
(((.(((((((((((((	chrX:102933362-102933681(-)$1	1	77	94	23.4000
.................	chr4:77996838-77997125(-)$1	1	62	79	31.6000
.................	chr4:77996925-77997143(-)$1	1	80	97	31.6000
))...............	chr12:102124186-102124440(+)$1	1	77	94	24.0000
)))).............	chr8:30567271-30567526(-)$1	1	82	99	29.5000
..)))))))))...(((	chr19:52597087-52597367(-)$1	1	97	114	20.1000
.......((((((....	chr20:62559581-62559860(+)$1	1	84	101	27.4000
(((((((((((((((((	chr16:31199527-31199815(+)$1	1	78	95	28.1000
.................	chr16:30711824-30712127(+)$1	1	77	94	30.1000
(((((((((((......	chr6:150048184-150048448(-)$1	1	88	105	24.0000
..))))...........	chr16:71841913-71842183(-)$1	1	74	91	24.0000
....)))..........	chr8:22269333-22269559(+)$1	1	55	72	24.6000
.................	chr2:209169824-209170085(+)$1	1	233	250	20.8000
..............)))	chr19:54972210-54972440(+)$1	1	69	86	23.1000
)))).))))))))....	chr1:185275869-185276130(-)$1	1	169	186	29.0000
)))..............	chr19:54972704-54972961(+)$1	1	91	108	29.0000
.)))...))))).....	chr2:207014487-207014754(-)$1	1	63	80	22.9000
.)))))...........	chr12:72004729-72004985(-)$1	1	83	100	33.7000
((((((((.........	chr16:75033359-75033588(+)$1	1	68	85	21.0000
.((((((((((....))	chr14:39746029-39746286(+)$1	1	208	225	22.6000
))))))))....(((((	chr2:219613459-219613688(+)$1	1	25	42	22.1000
....)))..)).)))).	chr3:132297752-132298014(-)$1	1	231	248	24.0000
.................	chr12:123779013-123779286(-)$1	1	75	92	33.7000

#PSSM
U : 0.68	u : 0.16	C : 0.06	A : 0.06	G : 0.04	
U : 0.70	u : 0.16	A : 0.06	G : 0.06	C : 0.02	
C : 0.66	c : 0.10	U : 0.08	u : 0.06	G : 0.06	A : 0.04	
U : 0.78	u : 0.18	A : 0.04	
G : 0.36	U : 0.23	A : 0.12	u : 0.12	C : 0.10	g : 0.06	
A : 0.27	U : 0.27	C : 0.21	u : 0.18	G : 0.04	
U : 0.66	u : 0.19	C : 0.08	G : 0.04	A : 0.02	
U : 0.70	u : 0.19	C : 0.08	G : 0.02	
U : 0.70	u : 0.19	C : 0.04	A : 0.04	G : 0.02	
U : 0.68	u : 0.19	A : 0.06	C : 0.02	G : 0.02	g : 0.02	
U : 0.64	u : 0.21	C : 0.10	G : 0.04	
U : 0.74	u : 0.21	C : 0.04	
U : 0.64	u : 0.21	C : 0.10	A : 0.04	
U : 0.72	u : 0.21	G : 0.04	C : 0.02	
U : 0.70	u : 0.19	C : 0.08	g : 0.02	
U : 0.46	C : 0.23	u : 0.18	G : 0.04	A : 0.04	g : 0.04	
U : 0.46	C : 0.14	u : 0.14	A : 0.12	G : 0.06	g : 0.04	c : 0.04	

#score	1259.0000000000016
#seq	50
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_transcript_m1_run1.nuc.txt

#NT
UGGGGGGAGGU	chr17:75327483-75327765(+)$1	282	40	51	17.4366
GGGGGUGAGGG	chr13:92000948-92001197(+)$1	249	106	117	20.8873
GUGGGGGUGGG	chr4:1010041-1010310(+)$1	269	96	107	17.3661
UGGGGGCAGGG	chr16:2209170-2209436(+)$1	266	102	113	16.9436
GGGGCGGAGGC	chr16:2209455-2209719(+)$1	264	224	235	16.9436
GUGGGGGUGGG	chr4:6941372-6941660(+)$1	288	97	108	17.3661
GUGGGAGAGGG	chr16:85647680-85647962(+)$1	282	52	63	17.0845
GGGGGGGAGGG	chr11:62482479-62482736(-)$1	257	93	104	24.4084
GGUGGGCAGGG	chr19:42755318-42755586(-)$1	268	70	81	17.0140
UGGGGGGAGGG	chr2:97525717-97525978(-)$1	261	210	221	21.1690
UGGGGGAAGGG	chr22:50183176-50183453(-)$1	277	123	134	16.8028
ggcggugaggg	chr1:1368256-1368526(-)$1	270	70	81	17.0845
gggagggaggg	chr11:70610482-70610736(-)$1	254	132	143	21.5211
gggagggaggg	chr18:30350563-30350875(+)$1	312	56	67	21.5211
GGAGCGGAGGG	chr1:7765716-7765963(+)$1	247	111	122	16.8732
GGGGAGGAGGC	chr12:109124798-109125054(-)$1	256	118	129	17.0140
GCUGGGGAGGG	chr2:241564378-241564658(+)$1	280	129	140	17.6478
gcgggggaggg	chr2:191513639-191513852(+)$1	213	85	96	20.8169
GGGCGGGAGGG	chr1:245026635-245026901(-)$1	266	80	91	20.8169
GGGACGGAGGG	chr9:126030174-126030421(-)$1	247	47	58	17.7887
GUGGGGGUGGG	chr14:64970719-64971043(+)$1	324	90	101	17.3661
GGGUGGGAGGG	chr14:105258766-105259004(-)$1	238	154	165	20.9577
UGGGGGGAGGG	chr5:139492733-139492978(+)$1	245	100	111	21.1690
GAGGGUGAGGG	chr9:137251291-137251564(+)$1	273	100	111	17.0845
AGGGUGGAGGG	chr7:1936868-1937164(-)$1	296	134	145	17.0140
UGGGUGGAGGG	chr8:145026365-145026631(-)$1	266	4	15	17.5070
ggugggcaggg	chr10:134425515-134425782(+)$1	267	43	54	17.0140
gcggcggaggg	chr22:19418938-19419231(-)$1	293	62	73	17.0845
CGGGGCGAGGG	chr16:88533287-88533560(+)$1	273	112	123	16.7323
GAGGGGGAGGC	chr17:79110052-79110331(-)$1	279	141	152	16.8732
GGGGAGGCGGG	chr7:2058621-2058890(-)$1	269	103	114	16.7323
GUGGGGGAGGG	chr17:16284502-16284758(+)$1	256	101	112	21.0281
GCGGGUGAGGG	chr17:80190214-80190484(+)$1	270	17	28	17.2957
gggguggaggu	chr8:38626504-38626757(+)$1	253	42	53	17.0140
GGUGGGGAGGU	chr10:732128-732519(-)$1	391	111	122	17.5070
gugggugaggg	chr20:62363597-62363902(+)$1	305	31	42	17.5070
gcgggcgaggg	chr2:241507913-241508176(-)$1	263	220	231	16.9436
GGUGUGGAGGG	chr12:133098860-133099114(+)$1	254	78	89	17.5774
AGGGAGGAGGG	chr16:88531413-88531639(+)$1	226	29	40	17.0140
GGGAGUGAGGG	chr17:79133715-79133959(-)$1	244	101	112	17.9999
UGUGGGGAGGG	chr11:776854-777121(-)$1	267	108	119	17.9999
GGGAGGGAGGC	chr19:1142124-1142383(-)$1	259	77	88	17.7887
CUGGGGGAGGG	chr17:45771545-45771795(+)$1	250	39	50	17.2253
GGGAUGGAGGG	chr7:1993481-1993836(-)$1	355	100	111	17.8591
GGGGGGUAGGG	chrX:47078684-47078940(+)$1	256	239	250	19.9718
GGGGGUGAGGC	chr19:2270972-2271218(+)$1	246	99	110	17.1549
UGGGGCGAGGG	chr2:196522430-196522681(+)$1	251	105	116	17.2957
GGGAGGGAGGG	chr12:49175994-49176257(-)$1	263	118	129	21.5211
GGGGGGGUGGG	chr15:74702085-74702369(-)$1	284	76	87	20.7464
agggaggaggg	chr19:45157429-45157739(+)$1	310	91	102	17.0140
UGGGGGGUGGG	chr9:136834658-136835015(-)$1	357	105	116	17.5070
ggugggguggg	chr3:194068217-194068483(-)$1	266	10	21	17.5774
uggggggcggg	chr12:133404668-133404910(-)$1	242	157	168	17.1549
gggggggaugg	chr6:170049863-170050165(-)$1	302	214	225	19.6901
gggggGGAGGG	chr9:96026018-96026303(+)$1	285	91	102	24.4084
ggaugggaggg	chr16:8734584-8734824(+)$1	240	48	59	17.1549
GGGAGGGAGGC	chr1:27925614-27925883(-)$1	269	0	11	17.7887
GGUGGGGAUGG	chr9:136826859-136827149(-)$1	290	14	25	16.5211
gggcgagaggg	chr15:90545157-90545423(+)$1	266	14	25	16.8732
GGGGAGGAGGG	chr19:1087372-1087651(-)$1	279	128	139	20.7464
GGGAGGCAGGG	chr5:96271918-96272200(+)$1	282	86	97	17.2957
GGGGGGGAGGU	chr11:75283159-75283380(+)$1	221	40	51	20.6760
GGGGGUGAGGU	chr17:17733878-17734146(-)$1	268	18	29	17.1549
GGCUGGGAGGG	chr6:160492000-160492264(+)$1	264	78	89	17.1549
GUUGGGGAGGG	chr3:48470201-48470429(-)$1	228	74	85	17.8591
ggggggguggg	chr3:140661003-140661287(+)$1	284	22	33	20.7464
gggaggaaggg	chr19:35496245-35496515(+)$1	270	70	81	17.1549
ggugggguggg	chr1:155252557-155252846(+)$1	289	73	84	17.5774
GGUAGGGAGGG	chr16:87416530-87416814(-)$1	284	44	55	18.3521
GGGAGGGCGGG	chr2:240321672-240321925(-)$1	253	23	34	17.5070

#otherMatches

#Struct PSSM
nnnnnbba]cc	chr11:62368690-62368964(-)$1	274	61	72	17.2253
HHHH:::::::	chr17:75327483-75327765(+)$1	282	40	51	17.4366
:eeeee!!ddd	chr13:92000948-92001197(+)$1	249	106	117	20.8873
FFFFF{A:GGG	chr4:1010041-1010310(+)$1	269	96	107	17.3661
bb:HHHHHHHH	chr16:2209170-2209436(+)$1	266	102	113	16.9436
ggggg::::GG	chr16:2209455-2209719(+)$1	264	224	235	16.9436
ccc========	chr4:6941372-6941660(+)$1	288	97	108	17.3661
b]eeeee]ddd	chr16:85647680-85647962(+)$1	282	52	63	17.0845
]eeeee333gg	chr11:62482479-62482736(-)$1	257	93	104	24.4084
ggggggg22bb	chr19:42755318-42755586(-)$1	268	70	81	17.0140
ceeeee]dddd	chr2:97525717-97525978(-)$1	261	210	221	21.1690
!a"""gggggg	chr22:50183176-50183453(-)$1	277	123	134	16.8028
oooobb55555	chr1:1368256-1368526(-)$1	270	70	81	17.0845
^^^^^^^^^^^	chr11:70610482-70610736(-)$1	254	132	143	21.5211
ggggggg333e	chr18:30350563-30350875(+)$1	312	56	67	21.5211
HHHHHH}DDDD	chr1:7765716-7765963(+)$1	247	111	122	16.8732
mdddd4444bb	chr12:109124798-109125054(-)$1	256	118	129	17.0140
eee::::eeee	chr2:241564378-241564658(+)$1	280	129	140	17.6478
hhhh[bb[bb[	chr2:191513639-191513852(+)$1	213	85	96	20.8169
e[bb&&&&&&&	chr1:245026635-245026901(-)$1	266	80	91	20.8169
ii[bb####a[	chr9:126030174-126030421(-)$1	247	47	58	17.7887
eeeee[cccqq	chr14:64970719-64971043(+)$1	324	90	101	17.3661
]eeeee22ccc	chr14:105258766-105259004(-)$1	238	154	165	20.9577
iiiiccc:III	chr5:139492733-139492978(+)$1	245	100	111	21.1690
ccJJJJJJJJJ	chr9:137251291-137251564(+)$1	273	100	111	17.0845
ppppeeeeeJJ	chr7:1936868-1937164(-)$1	296	134	145	17.0140
DDEEEEE{CCC	chr8:145026365-145026631(-)$1	266	4	15	17.5070
::::ggggggg	chr10:134425515-134425782(+)$1	267	43	54	17.0140
bbCCC{DDDD{	chr22:19418938-19419231(-)$1	293	62	73	17.0845
e]a]=======	chr16:88533287-88533560(+)$1	273	112	123	16.7323
5555bb22ddd	chr17:79110052-79110331(-)$1	279	141	152	16.8732
fffff[a!!bb	chr7:2058621-2058890(-)$1	269	103	114	16.7323
[ccc[a!!a[a	chr17:16284502-16284758(+)$1	256	101	112	21.0281
MMDDDD:ccc[	chr17:80190214-80190484(+)$1	270	17	28	17.2957
[aqqqqqqqqa	chr8:38626504-38626757(+)$1	253	42	53	17.0140
=]a88888888	chr10:732128-732519(-)$1	391	111	122	17.5070
FFFFFF::a[f	chr20:62363597-62363902(+)$1	305	31	42	17.5070
[aooooooa]c	chr2:241507913-241508176(-)$1	263	220	231	16.9436
[a"""dddd[a	chr12:133098860-133099114(+)$1	254	78	89	17.5774
dd:ggggggg[	chr16:88531413-88531639(+)$1	226	29	40	17.0140
tttttttthhh	chr17:79133715-79133959(-)$1	244	101	112	17.9999
[ddddpppppp	chr11:776854-777121(-)$1	267	108	119	17.9999
qqqqqqqeeee	chr19:1142124-1142383(-)$1	259	77	88	17.7887
JJJJJJJJJJJ	chr17:45771545-45771795(+)$1	250	39	50	17.2253
dddd:DDDDCC	chr7:1993481-1993836(-)$1	355	100	111	17.8591
||EEEEEYYA}	chrX:47078684-47078940(+)$1	256	239	250	19.9718
ggg[aqqqqqq	chr19:2270972-2271218(+)$1	246	99	110	17.1549
4dddd]iiiii	chr2:196522430-196522681(+)$1	251	105	116	17.2957
5eeeee22ggg	chr12:49175994-49176257(-)$1	263	118	129	21.5211
oooooobb22d	chr15:74702085-74702369(-)$1	284	76	87	20.7464
sssssssssee	chr19:45157429-45157739(+)$1	310	91	102	17.0140
cc333dddd]c	chr9:136834658-136835015(-)$1	357	105	116	17.5070
a]a]bb:::::	chr3:194068217-194068483(-)$1	266	10	21	17.5774
22hhhhhhhh2	chr12:133404668-133404910(-)$1	242	157	168	17.1549
pppppppbb]c	chr6:170049863-170050165(-)$1	302	214	225	19.6901
dddd[bb"""g	chr9:96026018-96026303(+)$1	285	91	102	24.4084
>>>>>>>>>>>	chr16:8734584-8734824(+)$1	240	48	59	17.1549
CCC::ffffff	chr1:27925614-27925883(-)$1	269	0	11	17.7887
!bbmmmmbb22	chr9:136826859-136827149(-)$1	290	14	25	16.5211
(((ammmma88	chr15:90545157-90545423(+)$1	266	14	25	16.8732
gggg[a[ccc"	chr19:1087372-1087651(-)$1	279	128	139	20.7464
ggggggg7777	chr5:96271918-96272200(+)$1	282	86	97	17.2957
JJJJJJJ{A{A	chr11:75283159-75283380(+)$1	221	40	51	20.6760
JJJJJJJJJJ:	chr17:17733878-17734146(-)$1	268	18	29	17.1549
mmeeeee6666	chr6:160492000-160492264(+)$1	264	78	89	17.1549
b]iiiiiiiii	chr3:48470201-48470429(-)$1	228	74	85	17.8591
::::::EEEEE	chr3:140661003-140661287(+)$1	284	22	33	20.7464
qqqqqqqqhhh	chr19:35496245-35496515(+)$1	270	70	81	17.1549
hhhhhhhh]ff	chr1:155252557-155252846(+)$1	289	73	84	17.5774
GGGGGEEEEED	chr16:87416530-87416814(-)$1	284	44	55	18.3521
ddd!!cccnnn	chr2:240321672-240321925(-)$1	253	23	34	17.5070

#DB
.....))).))	chr11:62368690-62368964(-)$1	1	61	72	17.2253
((((.......	chr17:75327483-75327765(+)$1	1	40	51	17.4366
.(((((..(((	chr13:92000948-92001197(+)$1	1	106	117	20.8873
(((((.(.(((	chr4:1010041-1010310(+)$1	1	96	107	17.3661
)).((((((((	chr16:2209170-2209436(+)$1	1	102	113	16.9436
)))))....))	chr16:2209455-2209719(+)$1	1	224	235	16.9436
(((((((((((	chr4:6941372-6941660(+)$1	1	97	108	17.3661
).))))).)))	chr16:85647680-85647962(+)$1	1	52	63	17.0845
.)))))...))	chr11:62482479-62482736(-)$1	1	93	104	24.4084
)))))))..))	chr19:42755318-42755586(-)$1	1	70	81	17.0140
)))))).))))	chr2:97525717-97525978(-)$1	1	210	221	21.1690
.(...((((((	chr22:50183176-50183453(-)$1	1	123	134	16.8028
....)).....	chr1:1368256-1368526(-)$1	1	70	81	17.0845
...........	chr11:70610482-70610736(-)$1	1	132	143	21.5211
)))))))...)	chr18:30350563-30350875(+)$1	1	56	67	21.5211
)))))).))))	chr1:7765716-7765963(+)$1	1	111	122	16.8732
.))))....))	chr12:109124798-109125054(-)$1	1	118	129	17.0140
)))....((((	chr2:241564378-241564658(+)$1	1	129	140	17.6478
((((.((.((.	chr2:191513639-191513852(+)$1	1	85	96	20.8169
(.((.......	chr1:245026635-245026901(-)$1	1	80	91	20.8169
((.((....(.	chr9:126030174-126030421(-)$1	1	47	58	17.7887
(((((.(((..	chr14:64970719-64971043(+)$1	1	90	101	17.3661
.)))))..)))	chr14:105258766-105259004(-)$1	1	154	165	20.9577
))))))).)))	chr5:139492733-139492978(+)$1	1	100	111	21.1690
)))))))))))	chr9:137251291-137251564(+)$1	1	100	111	17.0845
....)))))))	chr7:1936868-1937164(-)$1	1	134	145	17.0140
(((((((.(((	chr8:145026365-145026631(-)$1	1	4	15	17.5070
....(((((((	chr10:134425515-134425782(+)$1	1	43	54	17.0140
))(((.((((.	chr22:19418938-19419231(-)$1	1	62	73	17.0845
).).)))))))	chr16:88533287-88533560(+)$1	1	112	123	16.7323
....))..)))	chr17:79110052-79110331(-)$1	1	141	152	16.8732
(((((.(..((	chr7:2058621-2058890(-)$1	1	103	114	16.7323
.(((.(..(.(	chr17:16284502-16284758(+)$1	1	101	112	21.0281
..((((.(((.	chr17:80190214-80190484(+)$1	1	17	28	17.2957
.(........)	chr8:38626504-38626757(+)$1	1	42	53	17.0140
).)........	chr10:732128-732519(-)$1	1	111	122	17.5070
((((((..(.(	chr20:62363597-62363902(+)$1	1	31	42	17.5070
.(......).)	chr2:241507913-241508176(-)$1	1	220	231	16.9436
.(...((((.(	chr12:133098860-133099114(+)$1	1	78	89	17.5774
)).(((((((.	chr16:88531413-88531639(+)$1	1	29	40	17.0140
........)))	chr17:79133715-79133959(-)$1	1	101	112	17.9999
.((((......	chr11:776854-777121(-)$1	1	108	119	17.9999
.......))))	chr19:1142124-1142383(-)$1	1	77	88	17.7887
(((((((((((	chr17:45771545-45771795(+)$1	1	39	50	17.2253
)))).))))))	chr7:1993481-1993836(-)$1	1	100	111	17.8591
..)))))..).	chrX:47078684-47078940(+)$1	1	239	250	19.9718
(((.(......	chr19:2270972-2271218(+)$1	1	99	110	17.1549
.)))).)))))	chr2:196522430-196522681(+)$1	1	105	116	17.2957
.)))))..)))	chr12:49175994-49176257(-)$1	1	118	129	21.5211
......))..)	chr15:74702085-74702369(-)$1	1	76	87	20.7464
.........))	chr19:45157429-45157739(+)$1	1	91	102	17.0140
))...)))).)	chr9:136834658-136835015(-)$1	1	105	116	17.5070
).).)).....	chr3:194068217-194068483(-)$1	1	10	21	17.5774
..)))))))).	chr12:133404668-133404910(-)$1	1	157	168	17.1549
.......)).)	chr6:170049863-170050165(-)$1	1	214	225	19.6901
((((.((...(	chr9:96026018-96026303(+)$1	1	91	102	24.4084
...........	chr16:8734584-8734824(+)$1	1	48	59	17.1549
(((..((((((	chr1:27925614-27925883(-)$1	1	0	11	17.7887
.((....))..	chr9:136826859-136827149(-)$1	1	14	25	16.5211
...(....)..	chr15:90545157-90545423(+)$1	1	14	25	16.8732
((((.(.(((.	chr19:1087372-1087651(-)$1	1	128	139	20.7464
)))))))....	chr5:96271918-96272200(+)$1	1	86	97	17.2957
(((((((.(.(	chr11:75283159-75283380(+)$1	1	40	51	20.6760
((((((((((.	chr17:17733878-17734146(-)$1	1	18	29	17.1549
..)))))....	chr6:160492000-160492264(+)$1	1	78	89	17.1549
).)))))))))	chr3:48470201-48470429(-)$1	1	74	85	17.8591
......(((((	chr3:140661003-140661287(+)$1	1	22	33	20.7464
........)))	chr19:35496245-35496515(+)$1	1	70	81	17.1549
)))))))).))	chr1:155252557-155252846(+)$1	1	73	84	17.5774
(((((((((((	chr16:87416530-87416814(-)$1	1	44	55	18.3521
(((..(((...	chr2:240321672-240321925(-)$1	1	23	34	17.5070

#PSSM
G : 0.54	g : 0.23	U : 0.12	A : 0.02	C : 0.02	a : 0.01	u : 0.01	
G : 0.57	g : 0.21	U : 0.09	c : 0.04	C : 0.02	A : 0.02	u : 0.01	
G : 0.59	g : 0.19	U : 0.11	u : 0.04	c : 0.01	A : 0.01	a : 0.01	C : 0.01	
G : 0.54	g : 0.19	A : 0.12	U : 0.04	a : 0.04	C : 0.01	u : 0.01	c : 0.01	
G : 0.57	g : 0.22	A : 0.05	U : 0.05	C : 0.04	c : 0.01	u : 0.01	a : 0.01	
G : 0.61	g : 0.19	U : 0.08	u : 0.02	C : 0.02	A : 0.01	c : 0.01	a : 0.01	
G : 0.67	g : 0.22	C : 0.04	A : 0.01	c : 0.01	U : 0.01	a : 0.01	
A : 0.64	a : 0.19	U : 0.07	u : 0.04	C : 0.02	c : 0.01	
G : 0.73	g : 0.23	u : 0.01	U : 0.01	
G : 0.74	g : 0.25	
G : 0.59	g : 0.23	C : 0.08	U : 0.07	u : 0.01	

#score	1298.6338028169005
#seq	71
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_UTR_m3_run2.nuc.txt

#NT
acacacacacacacacG	chr4:1019497-1019738(+)$1	241	19	36	38.4590
acacacacaaagacaca	chr11:2152885-2153094(-)$1	209	83	100	41.4918
acacacacaaagacaca	chr11:2152901-2153121(-)$1	220	110	127	41.4918
acacacacaaacacagc	chr11:2152800-2153003(-)$1	203	73	90	35.0983
acacacacaaacacaca	chr11:2152634-2152839(-)$1	205	33	50	44.5245
acacaaacacacacaca	chrX:65817307-65817550(-)$1	243	78	95	39.0327
acacacacaaacacaca	chr11:2152658-2152864(-)$1	206	58	75	44.5245
acacaugcacacacaca	chr13:113539504-113539709(+)$1	205	145	162	35.1803
acacacacaaacacaca	chr11:2152609-2152812(-)$1	203	6	23	44.5245
acacacacaaacgcaca	chr11:2153193-2153397(-)$1	204	116	133	41.0000
acacacacagacacaca	chr4:1019108-1019379(+)$1	271	182	199	41.8196
acacacacaaacacaca	chr11:2152627-2152834(-)$1	207	28	45	44.5245
acacauacauauacaca	chr21:46915826-46916034(+)$1	208	41	58	35.1803
acacacacaaagacaca	chr11:2152828-2153038(-)$1	210	27	44	41.4918
acacacacaaacgcaca	chr11:2153071-2153279(-)$1	208	45	62	41.0000
acacaugcacacacaca	chr13:113539526-113539767(+)$1	241	123	140	35.1803
acacacacacgcagaca	chr4:1019681-1019931(+)$1	250	115	132	33.9508
acacacacacacaaaca	chr11:111609488-111609708(-)$1	220	89	106	38.4590
acacacacacacacaca	chr13:30779876-30780159(-)$1	283	255	272	43.1311
ACACACACACACACACC	chr2:46989921-46990159(+)$1	238	91	108	38.5409
acacauacacgcacaca	chr21:46915618-46915838(+)$1	220	5	22	35.1803
acacacacacacacaca	chr13:30779639-30779904(-)$1	265	0	17	43.1311
GUACACACACACACACA	chr2:25963523-25963768(-)$1	245	65	82	33.6229
acacacacaaacacaca	chr11:2152600-2152806(-)$1	206	0	17	44.5245
GCACACACAAAUACACA	chr4:107269929-107270269(+)$1	340	183	200	36.3278
acacacacguacacaca	chrX:118750970-118751245(-)$1	275	175	192	37.3114
acacacacacgcacgca	chr4:1019828-1020088(+)$1	260	28	45	33.7868
acacacacaaagacaca	chr11:2152849-2153053(-)$1	204	42	59	41.4918
acacacacacacacaca	chr12:69051371-69051685(+)$1	314	164	181	43.1311
acacacacaaacacaca	chr11:2152664-2152870(-)$1	206	64	81	44.5245
acacacacagacacaca	chr17:4618894-4619118(+)$1	224	35	52	41.8196
acacacacacacacaca	chr12:23683669-23683911(-)$1	242	159	176	43.1311
acacaugcacacacaca	chr13:113539618-113539824(+)$1	206	31	48	35.1803
acacacacacacacaca	chr3:38534174-38534472(+)$1	298	104	121	43.1311
acacacacaaacgcaca	chr11:2153257-2153461(-)$1	204	180	197	41.0000
acacacacaaacgcaca	chr11:2153210-2153417(-)$1	207	136	153	41.0000
acacacacaaacgcaca	chr11:2152952-2153163(-)$1	211	21	38	41.0000
acacacacacacacaca	chr22:38169910-38170143(+)$1	233	84	101	43.1311
acacacacaaagacaca	chr11:2152825-2153027(-)$1	202	16	33	41.4918
acacacacaaacgcaca	chr11:2153232-2153435(-)$1	203	154	171	41.0000
acacacacaaacgcaca	chr11:2153188-2153391(-)$1	203	110	127	41.0000
acacacacaaagacaca	chr11:2152934-2153137(-)$1	203	126	143	41.4918
acacauacauauacaca	chr21:46915776-46915998(+)$1	222	91	108	35.1803
acacacacaaacacaca	chr11:2152766-2152971(-)$1	205	165	182	44.5245
acacacacaaacgcaca	chr11:2153060-2153263(-)$1	203	29	46	41.0000
acacacacaaagacaca	chr11:2152861-2153063(-)$1	202	52	69	41.4918
acacacacaaacacaca	chr11:2152688-2152891(-)$1	203	85	102	44.5245
acacacauauacacaca	chr19:6663190-6663398(-)$1	208	114	131	37.3114
acacacacaaacacaca	chr11:2152691-2152893(-)$1	202	87	104	44.5245
acacacacaaacacaca	chr11:2152698-2152905(-)$1	207	99	116	44.5245
ACACAUACAUACAUACA	chr2:139328562-139328845(+)$1	283	108	125	34.0327
acacacacaaacacaca	chr11:2152716-2152918(-)$1	202	112	129	44.5245
acacacacaaacacaca	chr11:2152708-2152913(-)$1	205	107	124	44.5245
acacacacaaacgcaca	chr11:2153217-2153419(-)$1	202	138	155	41.0000
acacauacauauacaca	chr21:46915722-46915971(+)$1	249	145	162	35.1803
acacacacaaagacaca	chr11:2152841-2153043(-)$1	202	32	49	41.4918
acacguacacacacaca	chr16:4740527-4740751(+)$1	224	25	42	34.8524
acacacacaaagacaca	chr11:2152856-2153058(-)$1	202	47	64	41.4918
acacacacaaacacaca	chr11:2152612-2152818(-)$1	206	12	29	44.5245
acacacacaaagacaca	chr11:2152808-2153015(-)$1	207	4	21	41.4918

#otherMatches

#Struct PSSM
:::::::::::::::::	chr11:2152771-2152974(-)$1	203	168	185	44.5245
:::::::::::::::gg	chr4:1019497-1019738(+)$1	241	19	36	38.4590
:::::::::::::::::	chr11:2152885-2153094(-)$1	209	83	100	41.4918
:::::::::::::::::	chr11:2152901-2153121(-)$1	220	110	127	41.4918
:::::::::::::::cc	chr11:2152800-2153003(-)$1	203	73	90	35.0983
:::::::::::::::::	chr11:2152634-2152839(-)$1	205	33	50	44.5245
^^^^^^^^^^^^^^^^^	chrX:65817307-65817550(-)$1	243	78	95	39.0327
:::::::::::::::::	chr11:2152658-2152864(-)$1	206	58	75	44.5245
ZZGGGGGGG@@@@@@@@	chr13:113539504-113539709(+)$1	205	145	162	35.1803
:::::::::::::::::	chr11:2152609-2152812(-)$1	203	6	23	44.5245
uuuuuuuuuuuubb333	chr11:2153193-2153397(-)$1	204	116	133	41.0000
uuuuuuucccGGGGGGG	chr4:1019108-1019379(+)$1	271	182	199	41.8196
:::::::::::::::::	chr11:2152627-2152834(-)$1	207	28	45	44.5245
mmmccc333ffffff22	chr21:46915826-46916034(+)$1	208	41	58	35.1803
:::::::::::::::::	chr11:2152828-2153038(-)$1	210	27	44	41.4918
::::::::::::bblll	chr11:2153071-2153279(-)$1	208	45	62	41.0000
333ggggggg::::::c	chr13:113539526-113539767(+)$1	241	123	140	35.1803
::::::::::cccmmmm	chr4:1019681-1019931(+)$1	250	115	132	33.9508
:::::::::::::::::	chr11:111609488-111609708(-)$1	220	89	106	38.4590
:::::::::::::::::	chr13:30779876-30780159(-)$1	283	255	272	43.1311
:::::::::::::::::	chr2:46989921-46990159(+)$1	238	91	108	38.5409
hhhhhh####ddddwww	chr21:46915618-46915838(+)$1	220	5	22	35.1803
::::::::::FFFFFF{	chr13:30779639-30779904(-)$1	265	0	17	43.1311
ccooooooccc]dddd:	chr2:25963523-25963768(-)$1	245	65	82	33.6229
:::::::::::::::::	chr11:2152600-2152806(-)$1	206	0	17	44.5245
dd:::::::::::::::	chr4:107269929-107270269(+)$1	340	183	200	36.3278
CMMMMBBKKEEEEE:::	chrX:118750970-118751245(-)$1	275	175	192	37.3114
JJJBB:::::ccc[ccc	chr4:1019828-1020088(+)$1	260	28	45	33.7868
:::::::::::::::::	chr11:2152849-2153053(-)$1	204	42	59	41.4918
[ccc[a[a[cccooooo	chr12:69051371-69051685(+)$1	314	164	181	43.1311
:::::::::::::::::	chr11:2152664-2152870(-)$1	206	64	81	44.5245
ff::::::::::::eee	chr17:4618894-4619118(+)$1	224	35	52	41.8196
h::::::::::::::::	chr12:23683669-23683911(-)$1	242	159	176	43.1311
:::::EEEEESSSSSSS	chr13:113539618-113539824(+)$1	206	31	48	35.1803
:::BB{BBKKDDDD{CC	chr3:38534174-38534472(+)$1	298	104	121	43.1311
uuuuuuuuuuuubb333	chr11:2153257-2153461(-)$1	204	180	197	41.0000
uuuuuuuuuuuubb333	chr11:2153210-2153417(-)$1	207	136	153	41.0000
:::::::::::CCC:::	chr11:2152952-2153163(-)$1	211	21	38	41.0000
:::::::::::::::::	chr22:38169910-38170143(+)$1	233	84	101	43.1311
:::::::::::::::::	chr11:2152825-2153027(-)$1	202	16	33	41.4918
uuuuuuuuuuuubb333	chr11:2153232-2153435(-)$1	203	154	171	41.0000
uuuuuuuuuuuubb333	chr11:2153188-2153391(-)$1	203	110	127	41.0000
:::::::::::::::::	chr11:2152934-2153137(-)$1	203	126	143	41.4918
mmmccc333ffffff22	chr21:46915776-46915998(+)$1	222	91	108	35.1803
:::::::::::::::::	chr11:2152766-2152971(-)$1	205	165	182	44.5245
::::::::::::bblll	chr11:2153060-2153263(-)$1	203	29	46	41.0000
:::::::::::::::::	chr11:2152861-2153063(-)$1	202	52	69	41.4918
:::::::::::::::::	chr11:2152688-2152891(-)$1	203	85	102	44.5245
:::::::::::::::::	chr19:6663190-6663398(-)$1	208	114	131	37.3114
:::::::::::::::::	chr11:2152691-2152893(-)$1	202	87	104	44.5245
:::::::::::::::::	chr11:2152698-2152905(-)$1	207	99	116	44.5245
))))))))ffffffmmm	chr2:139328562-139328845(+)$1	283	108	125	34.0327
:::::::::::::::::	chr11:2152716-2152918(-)$1	202	112	129	44.5245
:::::::::::::::::	chr11:2152708-2152913(-)$1	205	107	124	44.5245
uuuuuuuuuuuubb333	chr11:2153217-2153419(-)$1	202	138	155	41.0000
mmmccc333ffffff22	chr21:46915722-46915971(+)$1	249	145	162	35.1803
:::::::::::::::::	chr11:2152841-2153043(-)$1	202	32	49	41.4918
PPPBBMMMMHHHHHHHH	chr16:4740527-4740751(+)$1	224	25	42	34.8524
:::::::::::::::::	chr11:2152856-2153058(-)$1	202	47	64	41.4918
:::::::::::::::::	chr11:2152612-2152818(-)$1	206	12	29	44.5245
:::::::::::::::::	chr11:2152808-2153015(-)$1	207	4	21	41.4918

#DB
.................	chr11:2152771-2152974(-)$1	1	168	185	44.5245
...............((	chr4:1019497-1019738(+)$1	1	19	36	38.4590
.................	chr11:2152885-2153094(-)$1	1	83	100	41.4918
.................	chr11:2152901-2153121(-)$1	1	110	127	41.4918
...............((	chr11:2152800-2153003(-)$1	1	73	90	35.0983
.................	chr11:2152634-2152839(-)$1	1	33	50	44.5245
.................	chrX:65817307-65817550(-)$1	1	78	95	39.0327
.................	chr11:2152658-2152864(-)$1	1	58	75	44.5245
..)))))))........	chr13:113539504-113539709(+)$1	1	145	162	35.1803
.................	chr11:2152609-2152812(-)$1	1	6	23	44.5245
............))...	chr11:2153193-2153397(-)$1	1	116	133	41.0000
.......))))))))))	chr4:1019108-1019379(+)$1	1	182	199	41.8196
.................	chr11:2152627-2152834(-)$1	1	28	45	44.5245
...)))...))))))..	chr21:46915826-46916034(+)$1	1	41	58	35.1803
.................	chr11:2152828-2153038(-)$1	1	27	44	41.4918
............((...	chr11:2153071-2153279(-)$1	1	45	62	41.0000
...)))))))......(	chr13:113539526-113539767(+)$1	1	123	140	35.1803
..........(((....	chr4:1019681-1019931(+)$1	1	115	132	33.9508
.................	chr11:111609488-111609708(-)$1	1	89	106	38.4590
.................	chr13:30779876-30780159(-)$1	1	255	272	43.1311
.................	chr2:46989921-46990159(+)$1	1	91	108	38.5409
((((((....((((...	chr21:46915618-46915838(+)$1	1	5	22	35.1803
..........((((((.	chr13:30779639-30779904(-)$1	1	0	17	43.1311
((......))).)))).	chr2:25963523-25963768(-)$1	1	65	82	33.6229
.................	chr11:2152600-2152806(-)$1	1	0	17	44.5245
))...............	chr4:107269929-107270269(+)$1	1	183	200	36.3278
(....((..(((((...	chrX:118750970-118751245(-)$1	1	175	192	37.3114
(((((.....(((.(((	chr4:1019828-1020088(+)$1	1	28	45	33.7868
.................	chr11:2152849-2153053(-)$1	1	42	59	41.4918
.(((.(.(.(((.....	chr12:69051371-69051685(+)$1	1	164	181	43.1311
.................	chr11:2152664-2152870(-)$1	1	64	81	44.5245
))............(((	chr17:4618894-4619118(+)$1	1	35	52	41.8196
)................	chr12:23683669-23683911(-)$1	1	159	176	43.1311
.....(((((.......	chr13:113539618-113539824(+)$1	1	31	48	35.1803
...((.((..((((.((	chr3:38534174-38534472(+)$1	1	104	121	43.1311
............))...	chr11:2153257-2153461(-)$1	1	180	197	41.0000
............))...	chr11:2153210-2153417(-)$1	1	136	153	41.0000
...........(((...	chr11:2152952-2153163(-)$1	1	21	38	41.0000
.................	chr22:38169910-38170143(+)$1	1	84	101	43.1311
.................	chr11:2152825-2153027(-)$1	1	16	33	41.4918
............))...	chr11:2153232-2153435(-)$1	1	154	171	41.0000
............))...	chr11:2153188-2153391(-)$1	1	110	127	41.0000
.................	chr11:2152934-2153137(-)$1	1	126	143	41.4918
...)))...))))))..	chr21:46915776-46915998(+)$1	1	91	108	35.1803
.................	chr11:2152766-2152971(-)$1	1	165	182	44.5245
............((...	chr11:2153060-2153263(-)$1	1	29	46	41.0000
.................	chr11:2152861-2153063(-)$1	1	52	69	41.4918
.................	chr11:2152688-2152891(-)$1	1	85	102	44.5245
.................	chr19:6663190-6663398(-)$1	1	114	131	37.3114
.................	chr11:2152691-2152893(-)$1	1	87	104	44.5245
.................	chr11:2152698-2152905(-)$1	1	99	116	44.5245
........((((((...	chr2:139328562-139328845(+)$1	1	108	125	34.0327
.................	chr11:2152716-2152918(-)$1	1	112	129	44.5245
.................	chr11:2152708-2152913(-)$1	1	107	124	44.5245
............))...	chr11:2153217-2153419(-)$1	1	138	155	41.0000
...)))...))))))..	chr21:46915722-46915971(+)$1	1	145	162	35.1803
.................	chr11:2152841-2153043(-)$1	1	32	49	41.4918
...((....((((((((	chr16:4740527-4740751(+)$1	1	25	42	34.8524
.................	chr11:2152856-2153058(-)$1	1	47	64	41.4918
.................	chr11:2152612-2152818(-)$1	1	12	29	44.5245
.................	chr11:2152808-2153015(-)$1	1	4	21	41.4918

#PSSM
a : 0.93	A : 0.03	G : 0.03	
c : 0.93	C : 0.04	U : 0.01	
a : 0.93	A : 0.06	
c : 0.93	C : 0.06	
a : 0.91	A : 0.06	g : 0.01	
c : 0.78	u : 0.13	C : 0.04	a : 0.01	U : 0.01	
a : 0.88	A : 0.06	g : 0.04	
c : 0.91	C : 0.06	u : 0.01	
a : 0.91	A : 0.06	g : 0.01	
a : 0.55	c : 0.26	u : 0.08	g : 0.03	C : 0.03	A : 0.01	U : 0.01	
a : 0.88	A : 0.06	g : 0.04	
c : 0.72	g : 0.16	u : 0.04	C : 0.04	U : 0.01	
a : 0.78	g : 0.14	A : 0.06	
c : 0.90	C : 0.04	g : 0.01	a : 0.01	U : 0.01	
a : 0.91	A : 0.06	g : 0.01	
c : 0.91	C : 0.06	g : 0.01	
a : 0.90	A : 0.04	G : 0.01	c : 0.01	C : 0.01	

#score	2466.7377049180345
#seq	61
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_transcript_m2_run2.nuc.txt

#NT
CAG	chr19:36235214-36235476(-)$1	262	32	35	8.9999
CAG	chr2:128185779-128186028(+)$1	249	21	24	8.9999
CAG	chr14:39745983-39746279(+)$1	296	53	56	8.9999
cag	chr9:2162758-2162986(-)$1	228	42	45	8.9999
CAG	chr2:242438722-242438974(-)$1	252	55	58	8.9999
CAG	chr22:50882145-50882426(+)$1	281	17	20	8.9999
CAG	chr6:168307673-168307971(+)$1	298	33	36	8.9999
CAG	chr22:50873245-50873497(+)$1	252	28	31	8.9999
CAG	chr6:35437774-35438048(+)$1	274	3	6	8.9999
CAG	chr7:1588247-1588470(-)$1	223	3	6	8.9999
CAG	chr10:135107163-135107420(-)$1	257	3	6	8.9999
CAG	chr19:15807087-15807348(+)$1	261	35	38	8.9999
CAG	chr2:102458870-102459159(+)$1	289	12	15	8.9999
CAG	chr19:7711908-7712173(+)$1	265	9	12	8.9999
CAG	chr18:47340452-47340659(+)$1	207	0	3	8.9999
CAG	chr22:50187799-50188119(-)$1	320	15	18	8.9999
CAG	chr16:89973485-89973720(+)$1	235	23	26	8.9999
CAG	chr3:50255900-50256152(+)$1	252	43	46	8.9999
CAG	chr20:39796338-39796611(+)$1	273	41	44	8.9999
CAG	chr17:41607227-41607466(-)$1	239	70	73	8.9999
CAG	chr9:117063814-117064047(+)$1	233	38	41	8.9999
CAG	chr17:40766116-40766362(+)$1	246	22	25	8.9999
CAG	chr2:234184403-234184607(+)$1	204	37	40	8.9999
CAG	chr3:15755044-15755297(-)$1	253	65	68	8.9999
CAG	chr14:21490566-21490811(-)$1	245	75	78	8.9999
CAG	chr19:2435052-2435338(-)$1	286	64	67	8.9999
CAG	chr3:49723273-49723534(-)$1	261	3	6	8.9999
CAG	chr21:46276175-46276415(-)$1	240	0	3	8.9999
cag	chr9:89037755-89037960(-)$1	205	80	83	8.9999
CAG	chr14:64907960-64908201(+)$1	241	18	21	8.9999
CAG	chr17:40930764-40931081(+)$1	317	29	32	8.9999
CAG	chr17:79526302-79526548(-)$1	246	17	20	8.9999
CAG	chr2:234197390-234197607(+)$1	217	19	22	8.9999
cag	chr1:169525974-169526259(-)$1	285	60	63	8.9999
CAG	chrX:20154138-20154361(-)$1	223	37	40	8.9999
CAG	chr17:36880729-36880970(+)$1	241	4	7	8.9999
CAG	chr19:50361172-50361435(+)$1	263	5	8	8.9999
CAG	chr11:71718364-71718621(-)$1	257	14	17	8.9999
CAG	chr2:101622666-101622917(+)$1	251	63	66	8.9999
CAG	chr22:50882080-50882328(+)$1	248	2	5	8.9999
CAG	chr16:70712210-70712470(-)$1	260	6	9	8.9999
CAG	chr17:76122944-76123198(-)$1	254	140	143	8.9999
CAG	chr16:4659896-4660189(-)$1	293	73	76	8.9999
CAG	chr10:43891927-43892188(-)$1	261	18	21	8.9999
CAG	chr17:79865375-79865617(-)$1	242	13	16	8.9999
CAG	chr17:7129834-7130138(-)$1	304	16	19	8.9999
CAG	chr3:9516604-9516872(+)$1	268	43	46	8.9999
CAG	chr2:216211336-216211587(+)$1	251	142	145	8.9999
CAG	chr13:99090883-99091144(+)$1	261	3	6	8.9999
CAG	chr7:98479229-98479454(+)$1	225	11	14	8.9999
CAG	chr19:45317705-45317959(+)$1	254	10	13	8.9999
CAG	chr17:62496782-62497019(-)$1	237	16	19	8.9999
CAG	chr1:32796036-32796294(+)$1	258	74	77	8.9999
CAG	chr1:153905136-153905408(-)$1	272	42	45	8.9999
CAG	chr20:62326269-62326524(+)$1	255	34	37	8.9999
CAG	chr3:133467112-133467350(+)$1	238	24	27	8.9999
CAG	chr17:7010578-7010841(-)$1	263	135	138	8.9999
CAG	chr2:97530952-97531202(-)$1	250	45	48	8.9999
CAG	chr11:93454624-93454841(+)$1	217	24	27	8.9999
CAG	chr9:139731657-139731897(+)$1	240	25	28	8.9999
CAG	chr19:13216077-13216375(-)$1	298	4	7	8.9999
CAG	chr19:49605204-49605461(+)$1	257	2	5	8.9999
CAG	chr1:109642888-109643091(+)$1	203	130	133	8.9999
CAG	chr14:23447538-23447797(-)$1	259	20	23	8.9999
CAG	chr9:96070420-96070744(+)$1	324	28	31	8.9999
CAG	chr5:179048268-179048509(-)$1	241	59	62	8.9999
CAG	chr19:625250-625511(-)$1	261	21	24	8.9999
CAG	chr2:85571760-85572079(-)$1	319	97	100	8.9999
CAG	chr3:49722234-49722532(-)$1	298	11	14	8.9999
CAG	chr20:3194460-3194716(+)$1	256	34	37	8.9999
cag	chr17:79662629-79662912(+)$1	283	2	5	8.9999
cag	chr2:234184273-234184480(+)$1	207	50	53	8.9999
CAG	chr1:9796000-9796251(-)$1	251	17	20	8.9999
CAG	chr20:62577897-62578145(-)$1	248	1	4	8.9999
CAG	chr20:61594455-61594724(+)$1	269	144	147	8.9999
CAG	chr7:100485935-100486225(+)$1	290	37	40	8.9999
CAG	chr16:89799742-89800010(+)$1	268	144	147	8.9999
CAG	chr16:30080473-30080726(+)$1	253	79	82	8.9999
CAG	chr2:242609994-242610241(+)$1	247	3	6	8.9999
CAG	chr11:65390795-65391049(+)$1	254	40	43	8.9999
CAG	chr16:89962243-89962506(+)$1	263	8	11	8.9999
CAG	chr9:130286018-130286259(-)$1	241	11	14	8.9999
CAG	chr19:810548-810795(+)$1	247	33	36	8.9999
CAG	chr1:17966164-17966446(+)$1	282	12	15	8.9999
CAG	chr2:224758961-224759208(-)$1	247	36	39	8.9999
CAG	chr11:720923-721144(+)$1	221	12	15	8.9999
CAG	chr2:46604856-46605123(+)$1	267	4	7	8.9999
CAG	chr1:43394894-43395124(-)$1	230	4	7	8.9999
CAG	chr21:47636333-47636584(-)$1	251	15	18	8.9999
CAG	chr17:40060976-40061228(-)$1	252	60	63	8.9999
cag	chr9:72803509-72803741(-)$1	232	15	18	8.9999
CAG	chr1:155288494-155288744(+)$1	250	4	7	8.9999
CAG	chr16:74949777-74950028(-)$1	251	26	29	8.9999
CAG	chr9:71868937-71869193(+)$1	256	31	34	8.9999
CAG	chr13:113508430-113508728(+)$1	298	3	6	8.9999
CAG	chr1:155895709-155895927(-)$1	218	130	133	8.9999
CAG	chr5:179048309-179048528(-)$1	219	6	9	8.9999
CAG	chr8:48625901-48626204(+)$1	303	30	33	8.9999

#otherMatches

#Struct PSSM
c::	chr16:2012816-2013054(-)$1	238	25	28	8.9999
cc[	chr19:36235214-36235476(-)$1	262	32	35	8.9999
ddc	chr2:128185779-128186028(+)$1	249	21	24	8.9999
ddd	chr14:39745983-39746279(+)$1	296	53	56	8.9999
[dd	chr9:2162758-2162986(-)$1	228	42	45	8.9999
cc[	chr2:242438722-242438974(-)$1	252	55	58	8.9999
FFF	chr22:50882145-50882426(+)$1	281	17	20	8.9999
2dd	chr6:168307673-168307971(+)$1	298	33	36	8.9999
===	chr22:50873245-50873497(+)$1	252	28	31	8.9999
:::	chr6:35437774-35438048(+)$1	274	3	6	8.9999
:::	chr7:1588247-1588470(-)$1	223	3	6	8.9999
HHH	chr10:135107163-135107420(-)$1	257	3	6	8.9999
!cc	chr19:15807087-15807348(+)$1	261	35	38	8.9999
B:d	chr2:102458870-102459159(+)$1	289	12	15	8.9999
hh!	chr19:7711908-7712173(+)$1	265	9	12	8.9999
bb#	chr18:47340452-47340659(+)$1	207	0	3	8.9999
DD{	chr22:50187799-50188119(-)$1	320	15	18	8.9999
ddd	chr16:89973485-89973720(+)$1	235	23	26	8.9999
ooo	chr3:50255900-50256152(+)$1	252	43	46	8.9999
ccc	chr20:39796338-39796611(+)$1	273	41	44	8.9999
CCC	chr17:41607227-41607466(-)$1	239	70	73	8.9999
ddd	chr9:117063814-117064047(+)$1	233	38	41	8.9999
JJJ	chr17:40766116-40766362(+)$1	246	22	25	8.9999
ddd	chr2:234184403-234184607(+)$1	204	37	40	8.9999
fff	chr3:15755044-15755297(-)$1	253	65	68	8.9999
ddd	chr14:21490566-21490811(-)$1	245	75	78	8.9999
gcc	chr19:2435052-2435338(-)$1	286	64	67	8.9999
FFF	chr3:49723273-49723534(-)$1	261	3	6	8.9999
:cc	chr21:46276175-46276415(-)$1	240	0	3	8.9999
vvv	chr9:89037755-89037960(-)$1	205	80	83	8.9999
!!d	chr14:64907960-64908201(+)$1	241	18	21	8.9999
$$d	chr17:40930764-40931081(+)$1	317	29	32	8.9999
uuu	chr17:79526302-79526548(-)$1	246	17	20	8.9999
bbm	chr2:234197390-234197607(+)$1	217	19	22	8.9999
CCC	chr1:169525974-169526259(-)$1	285	60	63	8.9999
JJJ	chrX:20154138-20154361(-)$1	223	37	40	8.9999
hhh	chr17:36880729-36880970(+)$1	241	4	7	8.9999
EEE	chr19:50361172-50361435(+)$1	263	5	8	8.9999
fff	chr11:71718364-71718621(-)$1	257	14	17	8.9999
cc[	chr2:101622666-101622917(+)$1	251	63	66	8.9999
:hh	chr22:50882080-50882328(+)$1	248	2	5	8.9999
MMM	chr16:70712210-70712470(-)$1	260	6	9	8.9999
eee	chr17:76122944-76123198(-)$1	254	140	143	8.9999
LLC	chr16:4659896-4660189(-)$1	293	73	76	8.9999
f!!	chr10:43891927-43892188(-)$1	261	18	21	8.9999
[bb	chr17:79865375-79865617(-)$1	242	13	16	8.9999
eee	chr17:7129834-7130138(-)$1	304	16	19	8.9999
fff	chr3:9516604-9516872(+)$1	268	43	46	8.9999
bbc	chr2:216211336-216211587(+)$1	251	142	145	8.9999
FFF	chr13:99090883-99091144(+)$1	261	3	6	8.9999
DDD	chr7:98479229-98479454(+)$1	225	11	14	8.9999
ddd	chr19:45317705-45317959(+)$1	254	10	13	8.9999
eee	chr17:62496782-62497019(-)$1	237	16	19	8.9999
ffi	chr1:32796036-32796294(+)$1	258	74	77	8.9999
!!a	chr1:153905136-153905408(-)$1	272	42	45	8.9999
fff	chr20:62326269-62326524(+)$1	255	34	37	8.9999
ppc	chr3:133467112-133467350(+)$1	238	24	27	8.9999
ccc	chr17:7010578-7010841(-)$1	263	135	138	8.9999
GGG	chr2:97530952-97531202(-)$1	250	45	48	8.9999
DDD	chr11:93454624-93454841(+)$1	217	24	27	8.9999
A::	chr9:139731657-139731897(+)$1	240	25	28	8.9999
BBB	chr19:13216077-13216375(-)$1	298	4	7	8.9999
CC{	chr19:49605204-49605461(+)$1	257	2	5	8.9999
::d	chr1:109642888-109643091(+)$1	203	130	133	8.9999
!!b	chr14:23447538-23447797(-)$1	259	20	23	8.9999
CC{	chr9:96070420-96070744(+)$1	324	28	31	8.9999
dd:	chr5:179048268-179048509(-)$1	241	59	62	8.9999
lld	chr19:625250-625511(-)$1	261	21	24	8.9999
ddd	chr2:85571760-85572079(-)$1	319	97	100	8.9999
EKK	chr3:49722234-49722532(-)$1	298	11	14	8.9999
dd[	chr20:3194460-3194716(+)$1	256	34	37	8.9999
iii	chr17:79662629-79662912(+)$1	283	2	5	8.9999
fff	chr2:234184273-234184480(+)$1	207	50	53	8.9999
NFF	chr1:9796000-9796251(-)$1	251	17	20	8.9999
ddd	chr20:62577897-62578145(-)$1	248	1	4	8.9999
eee	chr20:61594455-61594724(+)$1	269	144	147	8.9999
ppf	chr7:100485935-100486225(+)$1	290	37	40	8.9999
cca	chr16:89799742-89800010(+)$1	268	144	147	8.9999
rrr	chr16:30080473-30080726(+)$1	253	79	82	8.9999
:::	chr2:242609994-242610241(+)$1	247	3	6	8.9999
33b	chr11:65390795-65391049(+)$1	254	40	43	8.9999
!bb	chr16:89962243-89962506(+)$1	263	8	11	8.9999
fff	chr9:130286018-130286259(-)$1	241	11	14	8.9999
CCC	chr19:810548-810795(+)$1	247	33	36	8.9999
KCC	chr1:17966164-17966446(+)$1	282	12	15	8.9999
[gg	chr2:224758961-224759208(-)$1	247	36	39	8.9999
c::	chr11:720923-721144(+)$1	221	12	15	8.9999
bba	chr2:46604856-46605123(+)$1	267	4	7	8.9999
DKK	chr1:43394894-43395124(-)$1	230	4	7	8.9999
DDD	chr21:47636333-47636584(-)$1	251	15	18	8.9999
ff"	chr17:40060976-40061228(-)$1	252	60	63	8.9999
[bb	chr9:72803509-72803741(-)$1	232	15	18	8.9999
eed	chr1:155288494-155288744(+)$1	250	4	7	8.9999
ddd	chr16:74949777-74950028(-)$1	251	26	29	8.9999
ff!	chr9:71868937-71869193(+)$1	256	31	34	8.9999
ee[	chr13:113508430-113508728(+)$1	298	3	6	8.9999
ggg	chr1:155895709-155895927(-)$1	218	130	133	8.9999
CCB	chr5:179048309-179048528(-)$1	219	6	9	8.9999
lld	chr8:48625901-48626204(+)$1	303	30	33	8.9999

#DB
)..	chr16:2012816-2013054(-)$1	1	25	28	8.9999
((.	chr19:36235214-36235476(-)$1	1	32	35	8.9999
)))	chr2:128185779-128186028(+)$1	1	21	24	8.9999
(((	chr14:39745983-39746279(+)$1	1	53	56	8.9999
.((	chr9:2162758-2162986(-)$1	1	42	45	8.9999
((.	chr2:242438722-242438974(-)$1	1	55	58	8.9999
(((	chr22:50882145-50882426(+)$1	1	17	20	8.9999
.))	chr6:168307673-168307971(+)$1	1	33	36	8.9999
(((	chr22:50873245-50873497(+)$1	1	28	31	8.9999
...	chr6:35437774-35438048(+)$1	1	3	6	8.9999
...	chr7:1588247-1588470(-)$1	1	3	6	8.9999
(((	chr10:135107163-135107420(-)$1	1	3	6	8.9999
.((	chr19:15807087-15807348(+)$1	1	35	38	8.9999
(.(	chr2:102458870-102459159(+)$1	1	12	15	8.9999
((.	chr19:7711908-7712173(+)$1	1	9	12	8.9999
((.	chr18:47340452-47340659(+)$1	1	0	3	8.9999
((.	chr22:50187799-50188119(-)$1	1	15	18	8.9999
(((	chr16:89973485-89973720(+)$1	1	23	26	8.9999
...	chr3:50255900-50256152(+)$1	1	43	46	8.9999
)))	chr20:39796338-39796611(+)$1	1	41	44	8.9999
(((	chr17:41607227-41607466(-)$1	1	70	73	8.9999
(((	chr9:117063814-117064047(+)$1	1	38	41	8.9999
(((	chr17:40766116-40766362(+)$1	1	22	25	8.9999
(((	chr2:234184403-234184607(+)$1	1	37	40	8.9999
)))	chr3:15755044-15755297(-)$1	1	65	68	8.9999
(((	chr14:21490566-21490811(-)$1	1	75	78	8.9999
(((	chr19:2435052-2435338(-)$1	1	64	67	8.9999
(((	chr3:49723273-49723534(-)$1	1	3	6	8.9999
.((	chr21:46276175-46276415(-)$1	1	0	3	8.9999
...	chr9:89037755-89037960(-)$1	1	80	83	8.9999
..(	chr14:64907960-64908201(+)$1	1	18	21	8.9999
..(	chr17:40930764-40931081(+)$1	1	29	32	8.9999
...	chr17:79526302-79526548(-)$1	1	17	20	8.9999
((.	chr2:234197390-234197607(+)$1	1	19	22	8.9999
(((	chr1:169525974-169526259(-)$1	1	60	63	8.9999
(((	chrX:20154138-20154361(-)$1	1	37	40	8.9999
(((	chr17:36880729-36880970(+)$1	1	4	7	8.9999
(((	chr19:50361172-50361435(+)$1	1	5	8	8.9999
)))	chr11:71718364-71718621(-)$1	1	14	17	8.9999
((.	chr2:101622666-101622917(+)$1	1	63	66	8.9999
.((	chr22:50882080-50882328(+)$1	1	2	5	8.9999
...	chr16:70712210-70712470(-)$1	1	6	9	8.9999
)))	chr17:76122944-76123198(-)$1	1	140	143	8.9999
..(	chr16:4659896-4660189(-)$1	1	73	76	8.9999
(..	chr10:43891927-43892188(-)$1	1	18	21	8.9999
.((	chr17:79865375-79865617(-)$1	1	13	16	8.9999
)))	chr17:7129834-7130138(-)$1	1	16	19	8.9999
)))	chr3:9516604-9516872(+)$1	1	43	46	8.9999
(((	chr2:216211336-216211587(+)$1	1	142	145	8.9999
(((	chr13:99090883-99091144(+)$1	1	3	6	8.9999
(((	chr7:98479229-98479454(+)$1	1	11	14	8.9999
)))	chr19:45317705-45317959(+)$1	1	10	13	8.9999
)))	chr17:62496782-62497019(-)$1	1	16	19	8.9999
)))	chr1:32796036-32796294(+)$1	1	74	77	8.9999
..(	chr1:153905136-153905408(-)$1	1	42	45	8.9999
)))	chr20:62326269-62326524(+)$1	1	34	37	8.9999
..)	chr3:133467112-133467350(+)$1	1	24	27	8.9999
)))	chr17:7010578-7010841(-)$1	1	135	138	8.9999
(((	chr2:97530952-97531202(-)$1	1	45	48	8.9999
(((	chr11:93454624-93454841(+)$1	1	24	27	8.9999
(..	chr9:139731657-139731897(+)$1	1	25	28	8.9999
(((	chr19:13216077-13216375(-)$1	1	4	7	8.9999
((.	chr19:49605204-49605461(+)$1	1	2	5	8.9999
..(	chr1:109642888-109643091(+)$1	1	130	133	8.9999
..(	chr14:23447538-23447797(-)$1	1	20	23	8.9999
((.	chr9:96070420-96070744(+)$1	1	28	31	8.9999
)).	chr5:179048268-179048509(-)$1	1	59	62	8.9999
..)	chr19:625250-625511(-)$1	1	21	24	8.9999
)))	chr2:85571760-85572079(-)$1	1	97	100	8.9999
(..	chr3:49722234-49722532(-)$1	1	11	14	8.9999
((.	chr20:3194460-3194716(+)$1	1	34	37	8.9999
(((	chr17:79662629-79662912(+)$1	1	2	5	8.9999
)))	chr2:234184273-234184480(+)$1	1	50	53	8.9999
.((	chr1:9796000-9796251(-)$1	1	17	20	8.9999
(((	chr20:62577897-62578145(-)$1	1	1	4	8.9999
)))	chr20:61594455-61594724(+)$1	1	144	147	8.9999
..)	chr7:100485935-100486225(+)$1	1	37	40	8.9999
)))	chr16:89799742-89800010(+)$1	1	144	147	8.9999
...	chr16:30080473-30080726(+)$1	1	79	82	8.9999
...	chr2:242609994-242610241(+)$1	1	3	6	8.9999
..)	chr11:65390795-65391049(+)$1	1	40	43	8.9999
.((	chr16:89962243-89962506(+)$1	1	8	11	8.9999
(((	chr9:130286018-130286259(-)$1	1	11	14	8.9999
(((	chr19:810548-810795(+)$1	1	33	36	8.9999
.((	chr1:17966164-17966446(+)$1	1	12	15	8.9999
.((	chr2:224758961-224759208(-)$1	1	36	39	8.9999
)..	chr11:720923-721144(+)$1	1	12	15	8.9999
(((	chr2:46604856-46605123(+)$1	1	4	7	8.9999
(..	chr1:43394894-43395124(-)$1	1	4	7	8.9999
(((	chr21:47636333-47636584(-)$1	1	15	18	8.9999
((.	chr17:40060976-40061228(-)$1	1	60	63	8.9999
.((	chr9:72803509-72803741(-)$1	1	15	18	8.9999
(((	chr1:155288494-155288744(+)$1	1	4	7	8.9999
)))	chr16:74949777-74950028(-)$1	1	26	29	8.9999
((.	chr9:71868937-71869193(+)$1	1	31	34	8.9999
((.	chr13:113508430-113508728(+)$1	1	3	6	8.9999
(((	chr1:155895709-155895927(-)$1	1	130	133	8.9999
(((	chr5:179048309-179048528(-)$1	1	6	9	8.9999
..)	chr8:48625901-48626204(+)$1	1	30	33	8.9999

#PSSM
C : 0.93	c : 0.06	
A : 0.93	a : 0.06	
G : 0.93	g : 0.06	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_UTR_m2_run1.nuc.txt

#NT
CCACCGCCCCU	chr6:88411503-88411725(-)$1	222	92	103	11.1250
CCCCCCUUCCC	chr17:37617721-37617990(+)$1	269	5	16	15.3214
CCCCCCCGCCC	chr19:18390849-18391078(-)$1	229	52	63	13.2678
CCAGCCUGCCC	chr13:75936192-75936444(-)$1	252	57	68	14.2500
CCAACCACCCU	chr6:32939488-32939713(+)$1	225	149	160	11.4821
CCUUCCUCACC	chr12:58216627-58216877(-)$1	250	169	180	13.1785
CCACCCUCCAC	chr3:152017159-152017417(+)$1	258	144	155	16.6607
CCACCCCCUCU	chr6:32940085-32940345(+)$1	260	111	122	11.4821
CCUUCCUCCCC	chr19:50027890-50028130(+)$1	240	222	233	16.7500
CCACCCCUCCA	chr1:8074101-8074345(-)$1	244	63	74	10.6785
CUACCCUGCCC	chr3:49050502-49050793(+)$1	291	146	157	12.4642
CCACCCUGCGC	chr13:113536538-113536784(+)$1	246	27	38	12.9107
CCCCUCUCGCC	chr17:77807550-77807806(-)$1	256	126	137	12.0178
CCACCCCCGCC	chr2:20647918-20648160(+)$1	242	224	235	14.8750
CUGCCCUCCCC	chr17:37618172-37618415(+)$1	243	26	37	14.2500
CCUCCCUCUUC	chr17:76203154-76203402(+)$1	248	44	55	12.2857
UCAGCCUCCCC	chr6:11190706-11190967(-)$1	261	42	53	14.4285
CCAGUCGCCCC	chr6:43473425-43473666(+)$1	241	67	78	11.4821
CCAGCCUCCCU	chr22:29191377-29191626(-)$1	249	29	40	14.6964
CCAGCCUCCUG	chr2:238499361-238499592(-)$1	231	167	178	10.7678
UCCUCCUCCCC	chr6:32939790-32940040(+)$1	250	137	148	13.0000
CCACCCUCUCC	chr12:12870269-12870527(+)$1	258	228	239	17.1964
CCACCCUCCCU	chr6:30584478-30584737(-)$1	259	204	215	17.3750
CCACCCUCCCC	chr19:18391024-18391308(-)$1	284	83	94	20.7678
CCACCCCCCUG	chr16:30544057-30544318(-)$1	261	15	26	11.1250
CCAGCCGCCUC	chr14:24906386-24906648(+)$1	262	141	152	11.6607
CCAGCCUCCCA	chr11:116660586-116660851(-)$1	265	224	235	14.4285
CCAACCACCCU	chr6:32939532-32939758(+)$1	226	105	116	11.4821
GCCCCCUCCCC	chr1:59249085-59249331(-)$1	246	137	148	15.5000
GCCCCCUCccc	chr1:109235019-109235292(+)$1	273	148	159	15.5000
UCCCGCUCCCC	chr19:47290458-47290698(-)$1	240	48	59	11.8392
GCCCUCUCCCC	chr7:72985047-72985322(-)$1	275	153	164	11.6607
CCCCCAUCCUC	chr17:44249195-44249464(-)$1	269	24	35	11.7500
CCGCCCUCGCC	chr13:76056038-76056303(-)$1	265	161	172	15.1428
CCUCCAUGCCC	chr1:1263460-1263722(+)$1	262	189	200	11.6607
CCCCGCGCCCC	chr2:86850116-86850361(-)$1	245	41	52	12.7321
CCUUCCACCCC	chr7:44807506-44807756(+)$1	250	49	60	13.9821
CCGCCCUCACC	chr15:70389688-70389970(-)$1	282	249	260	15.1428
UCUCCCUCCCC	chr14:21737417-21737620(-)$1	203	147	158	15.8571
cuucccucccc	chr5:137089753-137089997(-)$1	244	55	66	15.0535
UCCUCCUCCCC	chr7:99226818-99227070(+)$1	252	161	172	13.0000
CCAGCCGCCCA	chr9:134371578-134371827(+)$1	249	37	48	11.6607
CCUCCAUCACC	chr17:79517481-79517749(-)$1	268	51	62	11.9285
CCUCCCUCAGC	chr3:79067914-79068159(-)$1	245	113	124	11.9285
CCUCCUGCCCC	chr7:73096571-73096876(-)$1	305	176	187	12.5535
CCCCACACCCC	chr12:89742816-89743055(-)$1	239	29	40	12.6428
CCACCCCCGCC	chr2:20648029-20648255(+)$1	226	113	124	14.8750
UCACCCUCCUC	chr11:74976544-74976799(-)$1	255	136	147	13.4464
CCUUCCUACCC	chr3:49050210-49050523(+)$1	313	249	260	12.5535
CCAAACUCCCC	chr19:4652413-4652665(+)$1	252	138	149	13.6250
CCUUGCUCCCC	chr16:30543480-30543700(-)$1	220	44	55	12.8214
CCACUCUCUCC	chr8:11695928-11696193(+)$1	265	140	151	13.3571
CCUCCCACCCC	chr17:65103381-65103632(-)$1	251	62	73	16.7500
ccgccgccccc	chr9:80646048-80646322(-)$1	274	9	20	12.4642
CCACCGCCCCC	chr20:44519628-44519920(+)$1	292	251	262	14.5178

#otherMatches

#Struct PSSM
EEEEEIIIIII	chr2:44065679-44065933(-)$1	254	203	214	10.8571
eeeHHHHHHHH	chr6:88411503-88411725(-)$1	222	92	103	11.1250
eea[eeeeeac	chr17:37617721-37617990(+)$1	269	5	16	15.3214
gggggggffff	chr19:18390849-18391078(-)$1	229	52	63	13.2678
:cccooooooc	chr13:75936192-75936444(-)$1	252	57	68	14.2500
gg22bb]ccc]	chr6:32939488-32939713(+)$1	225	149	160	11.4821
==========^	chr12:58216627-58216877(-)$1	250	169	180	13.1785
>>>>>>>>>>>	chr3:152017159-152017417(+)$1	258	144	155	16.6607
xxxxxxxxxxx	chr6:32940085-32940345(+)$1	260	111	122	11.4821
sssssccc::E	chr19:50027890-50028130(+)$1	240	222	233	16.7500
sseeeee22ee	chr1:8074101-8074345(-)$1	244	63	74	10.6785
5555iiiiiii	chr3:49050502-49050793(+)$1	291	146	157	12.4642
cc22ffffff:	chr13:113536538-113536784(+)$1	246	27	38	12.9107
hhhh4444ccc	chr17:77807550-77807806(-)$1	256	126	137	12.0178
2bb]bb]cccf	chr2:20647918-20648160(+)$1	242	224	235	14.8750
DDDeeeee===	chr17:37618172-37618415(+)$1	243	26	37	14.2500
eee:::::iii	chr17:76203154-76203402(+)$1	248	44	55	12.2857
IIII::::ddd	chr6:11190706-11190967(-)$1	261	42	53	14.4285
ee::::DDDDK	chr6:43473425-43473666(+)$1	241	67	78	11.4821
eeeee[eeeee	chr22:29191377-29191626(-)$1	249	29	40	14.6964
llleeeee::B	chr2:238499361-238499592(-)$1	231	167	178	10.7678
]ccc::IIIII	chr6:32939790-32940040(+)$1	250	137	148	13.0000
CCCBBGGGGGG	chr12:12870269-12870527(+)$1	258	228	239	17.1964
^^^^^^^^eee	chr6:30584478-30584737(-)$1	259	204	215	17.3750
f[dddd[dddd	chr19:18391024-18391308(-)$1	284	83	94	20.7678
DD::AGGGGGG	chr16:30544057-30544318(-)$1	261	15	26	11.1250
2ffffff]ccc	chr14:24906386-24906648(+)$1	262	141	152	11.6607
GGGGGZZZCCC	chr11:116660586-116660851(-)$1	265	224	235	14.4285
gg22bb]ccc]	chr6:32939532-32939758(+)$1	226	105	116	11.4821
{BBffffffbb	chr1:59249085-59249331(-)$1	246	137	148	15.5000
bqqqqqqqqbb	chr1:109235019-109235292(+)$1	273	148	159	15.5000
EEEeeeeeeee	chr19:47290458-47290698(-)$1	240	48	59	11.8392
eee&&&&&&&d	chr7:72985047-72985322(-)$1	275	153	164	11.6607
(((((((((cc	chr17:44249195-44249464(-)$1	269	24	35	11.7500
EEEEYYEEEEE	chr13:76056038-76056303(-)$1	265	161	172	15.1428
ee]bb22bb::	chr1:1263460-1263722(+)$1	262	189	200	11.6607
CCC{EEEEE::	chr2:86850116-86850361(-)$1	245	41	52	12.7321
++++++++ggg	chr7:44807506-44807756(+)$1	250	49	60	13.9821
DDDDGGGGGGG	chr15:70389688-70389970(-)$1	282	249	260	15.1428
feeeeecccgg	chr14:21737417-21737620(-)$1	203	147	158	15.8571
DDD{EEEEEDD	chr5:137089753-137089997(-)$1	244	55	66	15.0535
FFFDDDDACCC	chr7:99226818-99227070(+)$1	252	161	172	13.0000
ee[bb[ccc[c	chr9:134371578-134371827(+)$1	249	37	48	11.6607
ggggggnnnnn	chr17:79517481-79517749(-)$1	268	51	62	11.9285
333ccchhhhh	chr3:79067914-79068159(-)$1	245	113	124	11.9285
CFFFFFFYYAB	chr7:73096571-73096876(-)$1	305	176	187	12.5535
22dddd:::::	chr12:89742816-89743055(-)$1	239	29	40	12.6428
cc:::::hhhh	chr2:20648029-20648255(+)$1	226	113	124	14.8750
555ffffff::	chr11:74976544-74976799(-)$1	255	136	147	13.4464
ee]bbdddda[	chr3:49050210-49050523(+)$1	313	249	260	12.5535
F:::::::::D	chr19:4652413-4652665(+)$1	252	138	149	13.6250
llldddd::bb	chr16:30543480-30543700(-)$1	220	44	55	12.8214
uuuuuuuuuuu	chr8:11695928-11696193(+)$1	265	140	151	13.3571
::::::::::e	chr17:65103381-65103632(-)$1	251	62	73	16.7500
cc[eeeeeddd	chr9:80646048-80646322(-)$1	274	9	20	12.4642
DDDggggggg"	chr20:44519628-44519920(+)$1	292	251	262	14.5178

#DB
)))))))))))	chr2:44065679-44065933(-)$1	1	203	214	10.8571
)))))))))))	chr6:88411503-88411725(-)$1	1	92	103	11.1250
(((.(((((((	chr17:37617721-37617990(+)$1	1	5	16	15.3214
)))))))((((	chr19:18390849-18391078(-)$1	1	52	63	13.2678
.(((......)	chr13:75936192-75936444(-)$1	1	57	68	14.2500
))..)).))).	chr6:32939488-32939713(+)$1	1	149	160	11.4821
((((((((((.	chr12:58216627-58216877(-)$1	1	169	180	13.1785
...........	chr3:152017159-152017417(+)$1	1	144	155	16.6607
...........	chr6:32940085-32940345(+)$1	1	111	122	11.4821
.....)))..)	chr19:50027890-50028130(+)$1	1	222	233	16.7500
..)))))..))	chr1:8074101-8074345(-)$1	1	63	74	10.6785
....)))))))	chr3:49050502-49050793(+)$1	1	146	157	12.4642
))..)))))).	chr13:113536538-113536784(+)$1	1	27	38	12.9107
))))....)))	chr17:77807550-77807806(-)$1	1	126	137	12.0178
.)).)).))))	chr2:20647918-20648160(+)$1	1	224	235	14.8750
(((((((((((	chr17:37618172-37618415(+)$1	1	26	37	14.2500
))).....(((	chr17:76203154-76203402(+)$1	1	44	55	12.2857
((((....(((	chr6:11190706-11190967(-)$1	1	42	53	14.4285
))....((((.	chr6:43473425-43473666(+)$1	1	67	78	11.4821
(((((.(((((	chr22:29191377-29191626(-)$1	1	29	40	14.6964
...)))))..)	chr2:238499361-238499592(-)$1	1	167	178	10.7678
.)))..)))))	chr6:32939790-32940040(+)$1	1	137	148	13.0000
)))))))))))	chr12:12870269-12870527(+)$1	1	228	239	17.1964
........)))	chr6:30584478-30584737(-)$1	1	204	215	17.3750
(.((((.((((	chr19:18391024-18391308(-)$1	1	83	94	20.7678
((..(((((((	chr16:30544057-30544318(-)$1	1	15	26	11.1250
.)))))).)))	chr14:24906386-24906648(+)$1	1	141	152	11.6607
)))))...)))	chr11:116660586-116660851(-)$1	1	224	235	14.4285
))..)).))).	chr6:32939532-32939758(+)$1	1	105	116	11.4821
.((((((((((	chr1:59249085-59249331(-)$1	1	137	148	15.5000
(........))	chr1:109235019-109235292(+)$1	1	148	159	15.5000
(((((((((((	chr19:47290458-47290698(-)$1	1	48	59	11.8392
(((.......(	chr7:72985047-72985322(-)$1	1	153	164	11.6607
.........((	chr17:44249195-44249464(-)$1	1	24	35	11.7500
))))..)))))	chr13:76056038-76056303(-)$1	1	161	172	15.1428
)).))..))..	chr1:1263460-1263722(+)$1	1	189	200	11.6607
(((.(((((..	chr2:86850116-86850361(-)$1	1	41	52	12.7321
........(((	chr7:44807506-44807756(+)$1	1	49	60	13.9821
)))))))))))	chr15:70389688-70389970(-)$1	1	249	260	15.1428
))))))(((((	chr14:21737417-21737620(-)$1	1	147	158	15.8571
(((.(((((((	chr5:137089753-137089997(-)$1	1	55	66	15.0535
)))))))))))	chr7:99226818-99227070(+)$1	1	161	172	13.0000
((.((.(((.(	chr9:134371578-134371827(+)$1	1	37	48	11.6607
((((((.....	chr17:79517481-79517749(-)$1	1	51	62	11.9285
...))))))))	chr3:79067914-79068159(-)$1	1	113	124	11.9285
)))))))..))	chr7:73096571-73096876(-)$1	1	176	187	12.5535
..)))).....	chr12:89742816-89743055(-)$1	1	29	40	12.6428
)).....((((	chr2:20648029-20648255(+)$1	1	113	124	14.8750
...))))))..	chr11:74976544-74976799(-)$1	1	136	147	13.4464
)).))(((((.	chr3:49050210-49050523(+)$1	1	249	260	12.5535
).........(	chr19:4652413-4652665(+)$1	1	138	149	13.6250
...))))..((	chr16:30543480-30543700(-)$1	1	44	55	12.8214
...........	chr8:11695928-11696193(+)$1	1	140	151	13.3571
..........(	chr17:65103381-65103632(-)$1	1	62	73	16.7500
((.((((((((	chr9:80646048-80646322(-)$1	1	9	20	12.4642
)))(((((((.	chr20:44519628-44519920(+)$1	1	251	262	14.5178

#PSSM
C : 0.80	U : 0.10	G : 0.05	c : 0.03	
C : 0.92	U : 0.03	u : 0.01	c : 0.01	
A : 0.48	C : 0.21	U : 0.21	G : 0.05	u : 0.01	g : 0.01	
C : 0.64	G : 0.14	U : 0.12	A : 0.05	c : 0.03	
C : 0.80	U : 0.07	G : 0.05	c : 0.03	A : 0.03	
C : 0.83	G : 0.05	A : 0.05	c : 0.01	U : 0.01	g : 0.01	
U : 0.62	C : 0.16	A : 0.08	G : 0.08	u : 0.01	c : 0.01	
C : 0.82	G : 0.08	U : 0.03	c : 0.03	A : 0.01	
C : 0.73	A : 0.07	U : 0.07	G : 0.07	c : 0.05	
C : 0.78	U : 0.10	c : 0.05	G : 0.03	A : 0.01	
C : 0.73	U : 0.10	G : 0.05	A : 0.05	c : 0.05	

#score	756.2142857142862
#seq	56
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_CDS_m1_run2.nuc.txt

#NT
GAGG	chr1:154942446-154942754(-)$1	308	25	29	11.9999
GAGG	chr8:144922780-144923069(-)$1	289	8	12	11.9999
GAGG	chr20:32258400-32258641(-)$1	241	63	67	11.9999
GAGG	chr7:1522114-1522428(-)$1	314	129	133	11.9999
GAGG	chr2:232327844-232328103(-)$1	259	38	42	11.9999
GAGG	chr9:97767762-97768028(+)$1	266	121	125	11.9999
GAGG	chr11:85374810-85375101(-)$1	291	139	143	11.9999
GAGG	chr20:47850073-47850357(+)$1	284	4	8	11.9999
GAGG	chr13:107211829-107212045(-)$1	216	71	75	11.9999
GAGG	chr20:39721003-39721251(+)$1	248	84	88	11.9999
GAGG	chr22:21983690-21984031(-)$1	341	18	22	11.9999
GAGG	chr22:29694727-29694962(+)$1	235	1	5	11.9999
gagg	chr17:48823194-48823438(+)$1	244	18	22	11.9999
GAGG	chr1:39901267-39901544(+)$1	277	46	50	11.9999
GAGG	chr9:117068700-117068905(+)$1	205	34	38	11.9999
gagg	chr2:29169427-29169687(+)$1	260	56	60	11.9999
GAGG	chr22:29695683-29695942(+)$1	259	13	17	11.9999
GAGG	chr19:8509855-8510095(+)$1	240	54	58	11.9999
GAGG	chr9:117051109-117051343(+)$1	234	90	94	11.9999
GAGG	chr10:75457205-75457528(-)$1	323	5	9	11.9999
GAGG	chr20:34327285-34327502(-)$1	217	49	53	11.9999
GAGG	chr9:72333178-72333511(-)$1	333	256	260	11.9999
GAGG	chr5:133561322-133561747(-)$1	425	16	20	11.9999
GAGG	chr15:59179065-59179389(-)$1	324	121	125	11.9999
GAGG	chr16:28962440-28962692(+)$1	252	57	61	11.9999
GAGG	chr15:69072669-69072900(-)$1	231	88	92	11.9999
GAGG	chr11:830522-830824(+)$1	302	69	73	11.9999
GAGG	chr20:42086971-42087185(+)$1	214	48	52	11.9999
GAGG	chr6:43469241-43469510(+)$1	269	32	36	11.9999
GAGG	chr11:71189335-71189617(+)$1	282	132	136	11.9999
GAGG	chr15:69072333-69072565(-)$1	232	36	40	11.9999
GAGG	chr8:131370121-131370397(-)$1	276	54	58	11.9999
GAGG	chr9:101558472-101558903(-)$1	431	136	140	11.9999
GAGG	chr20:62339823-62340078(+)$1	255	115	119	11.9999
GAGG	chr20:57288433-57288711(+)$1	278	70	74	11.9999
GAGG	chr15:63340657-63340995(+)$1	338	138	142	11.9999
GAGG	chr1:27671854-27672132(+)$1	278	85	89	11.9999
GAGG	chr19:12405352-12405700(-)$1	348	15	19	11.9999
GAGG	chr10:70515028-70515332(+)$1	304	141	145	11.9999
GAGG	chr2:153573717-153574041(-)$1	324	135	139	11.9999
GAGG	chr3:48670850-48671076(-)$1	226	11	15	11.9999
gagg	chr7:148718030-148718271(-)$1	241	58	62	11.9999
GAGG	chr6:33164162-33164482(-)$1	320	19	23	11.9999
gagg	chr9:139734704-139734986(+)$1	282	123	127	11.9999
GAGG	chr19:18544291-18544524(+)$1	233	23	27	11.9999
GAGG	chr20:39791973-39792213(+)$1	240	6	10	11.9999
GAGG	chr20:44599879-44600220(-)$1	341	174	178	11.9999
GAGG	chr20:57568578-57568799(+)$1	221	47	51	11.9999
GAGG	chr11:377081-377407(+)$1	326	13	17	11.9999
GAGG	chr14:35099015-35099279(-)$1	264	155	159	11.9999
GAGG	chr7:24873961-24874261(-)$1	300	6	10	11.9999
GAGG	chr20:30193406-30193690(+)$1	284	145	149	11.9999
GAGG	chr8:110346555-110346833(+)$1	278	44	48	11.9999
GAGG	chr17:80146090-80146330(-)$1	240	39	43	11.9999
GAGG	chr19:58991945-58992235(-)$1	290	83	87	11.9999
gagg	chr12:56999527-56999847(-)$1	320	53	57	11.9999
GAGG	chr2:220434976-220435249(-)$1	273	9	13	11.9999
GAGG	chr14:23559639-23559888(-)$1	249	52	56	11.9999
GAGG	chr4:728610-728912(+)$1	302	138	142	11.9999
gagg	chr7:148718071-148718285(-)$1	214	72	76	11.9999
GAGG	chr2:102486011-102486387(+)$1	376	156	160	11.9999
GAGG	chr1:24125052-24125321(-)$1	269	101	105	11.9999
GAGG	chr17:42284578-42284836(-)$1	258	0	4	11.9999
GAGG	chr16:29990635-29990919(+)$1	284	112	116	11.9999
GAGG	chr9:131023352-131023628(-)$1	276	22	26	11.9999
GAGG	chr3:66023622-66023883(-)$1	261	0	4	11.9999
GAGG	chr7:2262113-2262374(-)$1	261	42	46	11.9999
GAGG	chr1:45278995-45279290(+)$1	295	74	78	11.9999
GAGG	chr3:48460610-48460872(-)$1	262	40	44	11.9999
GAGG	chr9:111680969-111681245(-)$1	276	200	204	11.9999
GAGG	chr7:148984631-148985022(+)$1	391	53	57	11.9999
GAGG	chr21:34143740-34144183(-)$1	443	92	96	11.9999
GAGG	chr5:881119-881409(-)$1	290	78	82	11.9999
GAGG	chr5:140044356-140044845(+)$1	489	6	10	11.9999
GAGG	chr2:85769617-85769900(+)$1	283	134	138	11.9999
GAGG	chr5:179153579-179153784(+)$1	205	151	155	11.9999
GAGG	chr17:8170273-8170570(+)$1	297	21	25	11.9999
GAGG	chr19:39195483-39195731(+)$1	248	31	35	11.9999
GAGG	chr3:183882010-183882273(+)$1	263	56	60	11.9999
gagg	chr1:153634756-153635075(-)$1	319	132	136	11.9999
gagg	chr2:232325473-232325677(-)$1	204	186	190	11.9999
GAGG	chr17:75488960-75489175(+)$1	215	47	51	11.9999
GAGG	chr3:184081214-184081465(+)$1	251	84	88	11.9999
GAGG	chr14:24108956-24109179(+)$1	223	152	156	11.9999
GAGG	chr17:48628920-48629174(+)$1	254	141	145	11.9999
GAGG	chr12:133362847-133363117(-)$1	270	3	7	11.9999
GAGG	chr11:18610048-18610351(-)$1	303	165	169	11.9999
GAGG	chr15:28517951-28518230(-)$1	279	41	45	11.9999
GAGG	chr16:89865472-89865729(-)$1	257	121	125	11.9999
GAGG	chr1:16891206-16891510(-)$1	304	8	12	11.9999
GAGG	chr16:722159-722423(+)$1	264	107	111	11.9999
GAGG	chrX:54584874-54585162(+)$1	288	128	132	11.9999

#otherMatches

#Struct PSSM
f[ee	chr1:46032472-46032774(+)$1	302	6	10	11.9999
gggg	chr1:154942446-154942754(-)$1	308	25	29	11.9999
"ggg	chr8:144922780-144923069(-)$1	289	8	12	11.9999
ccca	chr20:32258400-32258641(-)$1	241	63	67	11.9999
mmma	chr7:1522114-1522428(-)$1	314	129	133	11.9999
bggg	chr2:232327844-232328103(-)$1	259	38	42	11.9999
3ccc	chr9:97767762-97768028(+)$1	266	121	125	11.9999
ddd4	chr11:85374810-85375101(-)$1	291	139	143	11.9999
{CCC	chr20:47850073-47850357(+)$1	284	4	8	11.9999
c[as	chr13:107211829-107212045(-)$1	216	71	75	11.9999
nbb4	chr20:39721003-39721251(+)$1	248	84	88	11.9999
nccc	chr22:21983690-21984031(-)$1	341	18	22	11.9999
B{BB	chr22:29694727-29694962(+)$1	235	1	5	11.9999
::::	chr17:48823194-48823438(+)$1	244	18	22	11.9999
D{CC	chr1:39901267-39901544(+)$1	277	46	50	11.9999
!!ff	chr9:117068700-117068905(+)$1	205	34	38	11.9999
cc]i	chr2:29169427-29169687(+)$1	260	56	60	11.9999
DDDD	chr22:29695683-29695942(+)$1	259	13	17	11.9999
C{CC	chr19:8509855-8510095(+)$1	240	54	58	11.9999
iddd	chr9:117051109-117051343(+)$1	234	90	94	11.9999
GGGG	chr10:75457205-75457528(-)$1	323	5	9	11.9999
""dd	chr20:34327285-34327502(-)$1	217	49	53	11.9999
===d	chr9:72333178-72333511(-)$1	333	256	260	11.9999
qqqa	chr5:133561322-133561747(-)$1	425	16	20	11.9999
nnne	chr15:59179065-59179389(-)$1	324	121	125	11.9999
oooo	chr16:28962440-28962692(+)$1	252	57	61	11.9999
lddd	chr15:69072669-69072900(-)$1	231	88	92	11.9999
b]dd	chr11:830522-830824(+)$1	302	69	73	11.9999
mmmd	chr20:42086971-42087185(+)$1	214	48	52	11.9999
rrrr	chr6:43469241-43469510(+)$1	269	32	36	11.9999
]eee	chr11:71189335-71189617(+)$1	282	132	136	11.9999
DDDD	chr15:69072333-69072565(-)$1	232	36	40	11.9999
dddq	chr8:131370121-131370397(-)$1	276	54	58	11.9999
FFF{	chr9:101558472-101558903(-)$1	431	136	140	11.9999
bbdd	chr20:62339823-62340078(+)$1	255	115	119	11.9999
[ccc	chr20:57288433-57288711(+)$1	278	70	74	11.9999
C{CC	chr15:63340657-63340995(+)$1	338	138	142	11.9999
nfff	chr1:27671854-27672132(+)$1	278	85	89	11.9999
EEEE	chr19:12405352-12405700(-)$1	348	15	19	11.9999
====	chr10:70515028-70515332(+)$1	304	141	145	11.9999
oooa	chr2:153573717-153574041(-)$1	324	135	139	11.9999
cccc	chr3:48670850-48671076(-)$1	226	11	15	11.9999
nnbb	chr7:148718030-148718271(-)$1	241	58	62	11.9999
cmmm	chr6:33164162-33164482(-)$1	320	19	23	11.9999
FFFF	chr9:139734704-139734986(+)$1	282	123	127	11.9999
mmmm	chr19:18544291-18544524(+)$1	233	23	27	11.9999
dddm	chr20:39791973-39792213(+)$1	240	6	10	11.9999
c]bb	chr20:44599879-44600220(-)$1	341	174	178	11.9999
::ff	chr20:57568578-57568799(+)$1	221	47	51	11.9999
b[dd	chr11:377081-377407(+)$1	326	13	17	11.9999
ffff	chr14:35099015-35099279(-)$1	264	155	159	11.9999
ffao	chr7:24873961-24874261(-)$1	300	6	10	11.9999
llld	chr20:30193406-30193690(+)$1	284	145	149	11.9999
ssdd	chr8:110346555-110346833(+)$1	278	44	48	11.9999
7777	chr17:80146090-80146330(-)$1	240	39	43	11.9999
{EEE	chr19:58991945-58992235(-)$1	290	83	87	11.9999
::::	chr12:56999527-56999847(-)$1	320	53	57	11.9999
DDDd	chr2:220434976-220435249(-)$1	273	9	13	11.9999
====	chr14:23559639-23559888(-)$1	249	52	56	11.9999
d[cc	chr4:728610-728912(+)$1	302	138	142	11.9999
nnbb	chr7:148718071-148718285(-)$1	214	72	76	11.9999
iiii	chr2:102486011-102486387(+)$1	376	156	160	11.9999
dddd	chr1:24125052-24125321(-)$1	269	101	105	11.9999
EEEE	chr17:42284578-42284836(-)$1	258	0	4	11.9999
lldd	chr16:29990635-29990919(+)$1	284	112	116	11.9999
]ddd	chr9:131023352-131023628(-)$1	276	22	26	11.9999
::CC	chr3:66023622-66023883(-)$1	261	0	4	11.9999
dddf	chr7:2262113-2262374(-)$1	261	42	46	11.9999
eooo	chr1:45278995-45279290(+)$1	295	74	78	11.9999
33ff	chr3:48460610-48460872(-)$1	262	40	44	11.9999
CCCY	chr9:111680969-111681245(-)$1	276	200	204	11.9999
]ccc	chr7:148984631-148985022(+)$1	391	53	57	11.9999
33a]	chr21:34143740-34144183(-)$1	443	92	96	11.9999
eee[	chr5:881119-881409(-)$1	290	78	82	11.9999
BBFF	chr5:140044356-140044845(+)$1	489	6	10	11.9999
DDYY	chr2:85769617-85769900(+)$1	283	134	138	11.9999
qqqq	chr5:179153579-179153784(+)$1	205	151	155	11.9999
gggg	chr17:8170273-8170570(+)$1	297	21	25	11.9999
iiii	chr19:39195483-39195731(+)$1	248	31	35	11.9999
ggcc	chr3:183882010-183882273(+)$1	263	56	60	11.9999
GGGG	chr1:153634756-153635075(-)$1	319	132	136	11.9999
::::	chr2:232325473-232325677(-)$1	204	186	190	11.9999
gggg	chr17:75488960-75489175(+)$1	215	47	51	11.9999
neee	chr3:184081214-184081465(+)$1	251	84	88	11.9999
b!!g	chr14:24108956-24109179(+)$1	223	152	156	11.9999
cmmm	chr17:48628920-48629174(+)$1	254	141	145	11.9999
::JJ	chr12:133362847-133363117(-)$1	270	3	7	11.9999
gggg	chr11:18610048-18610351(-)$1	303	165	169	11.9999
{Acc	chr15:28517951-28518230(-)$1	279	41	45	11.9999
fff[	chr16:89865472-89865729(-)$1	257	121	125	11.9999
GGGG	chr1:16891206-16891510(-)$1	304	8	12	11.9999
dddd	chr16:722159-722423(+)$1	264	107	111	11.9999
C{BB	chrX:54584874-54585162(+)$1	288	128	132	11.9999

#DB
(.((	chr1:46032472-46032774(+)$1	1	6	10	11.9999
((((	chr1:154942446-154942754(-)$1	1	25	29	11.9999
.(((	chr8:144922780-144923069(-)$1	1	8	12	11.9999
))))	chr20:32258400-32258641(-)$1	1	63	67	11.9999
...)	chr7:1522114-1522428(-)$1	1	129	133	11.9999
((((	chr2:232327844-232328103(-)$1	1	38	42	11.9999
.)))	chr9:97767762-97768028(+)$1	1	121	125	11.9999
))).	chr11:85374810-85375101(-)$1	1	139	143	11.9999
.(((	chr20:47850073-47850357(+)$1	1	4	8	11.9999
(.(.	chr13:107211829-107212045(-)$1	1	71	75	11.9999
.)).	chr20:39721003-39721251(+)$1	1	84	88	11.9999
.)))	chr22:21983690-21984031(-)$1	1	18	22	11.9999
(.((	chr22:29694727-29694962(+)$1	1	1	5	11.9999
....	chr17:48823194-48823438(+)$1	1	18	22	11.9999
(.((	chr1:39901267-39901544(+)$1	1	46	50	11.9999
..((	chr9:117068700-117068905(+)$1	1	34	38	11.9999
)).)	chr2:29169427-29169687(+)$1	1	56	60	11.9999
((((	chr22:29695683-29695942(+)$1	1	13	17	11.9999
(.((	chr19:8509855-8510095(+)$1	1	54	58	11.9999
))))	chr9:117051109-117051343(+)$1	1	90	94	11.9999
((((	chr10:75457205-75457528(-)$1	1	5	9	11.9999
..((	chr20:34327285-34327502(-)$1	1	49	53	11.9999
((((	chr9:72333178-72333511(-)$1	1	256	260	11.9999
...)	chr5:133561322-133561747(-)$1	1	16	20	11.9999
...)	chr15:59179065-59179389(-)$1	1	121	125	11.9999
....	chr16:28962440-28962692(+)$1	1	57	61	11.9999
.)))	chr15:69072669-69072900(-)$1	1	88	92	11.9999
).))	chr11:830522-830824(+)$1	1	69	73	11.9999
...)	chr20:42086971-42087185(+)$1	1	48	52	11.9999
....	chr6:43469241-43469510(+)$1	1	32	36	11.9999
.)))	chr11:71189335-71189617(+)$1	1	132	136	11.9999
((((	chr15:69072333-69072565(-)$1	1	36	40	11.9999
(((.	chr8:131370121-131370397(-)$1	1	54	58	11.9999
(((.	chr9:101558472-101558903(-)$1	1	136	140	11.9999
))))	chr20:62339823-62340078(+)$1	1	115	119	11.9999
.(((	chr20:57288433-57288711(+)$1	1	70	74	11.9999
(.((	chr15:63340657-63340995(+)$1	1	138	142	11.9999
.)))	chr1:27671854-27672132(+)$1	1	85	89	11.9999
((((	chr19:12405352-12405700(-)$1	1	15	19	11.9999
))))	chr10:70515028-70515332(+)$1	1	141	145	11.9999
...)	chr2:153573717-153574041(-)$1	1	135	139	11.9999
((((	chr3:48670850-48671076(-)$1	1	11	15	11.9999
..))	chr7:148718030-148718271(-)$1	1	58	62	11.9999
(...	chr6:33164162-33164482(-)$1	1	19	23	11.9999
))))	chr9:139734704-139734986(+)$1	1	123	127	11.9999
....	chr19:18544291-18544524(+)$1	1	23	27	11.9999
(((.	chr20:39791973-39792213(+)$1	1	6	10	11.9999
).))	chr20:44599879-44600220(-)$1	1	174	178	11.9999
..((	chr20:57568578-57568799(+)$1	1	47	51	11.9999
(.((	chr11:377081-377407(+)$1	1	13	17	11.9999
))))	chr14:35099015-35099279(-)$1	1	155	159	11.9999
(((.	chr7:24873961-24874261(-)$1	1	6	10	11.9999
...)	chr20:30193406-30193690(+)$1	1	145	149	11.9999
..))	chr8:110346555-110346833(+)$1	1	44	48	11.9999
....	chr17:80146090-80146330(-)$1	1	39	43	11.9999
.(((	chr19:58991945-58992235(-)$1	1	83	87	11.9999
....	chr12:56999527-56999847(-)$1	1	53	57	11.9999
((((	chr2:220434976-220435249(-)$1	1	9	13	11.9999
))))	chr14:23559639-23559888(-)$1	1	52	56	11.9999
(.((	chr4:728610-728912(+)$1	1	138	142	11.9999
..))	chr7:148718071-148718285(-)$1	1	72	76	11.9999
))))	chr2:102486011-102486387(+)$1	1	156	160	11.9999
((((	chr1:24125052-24125321(-)$1	1	101	105	11.9999
((((	chr17:42284578-42284836(-)$1	1	0	4	11.9999
..))	chr16:29990635-29990919(+)$1	1	112	116	11.9999
.)))	chr9:131023352-131023628(-)$1	1	22	26	11.9999
..((	chr3:66023622-66023883(-)$1	1	0	4	11.9999
))))	chr7:2262113-2262374(-)$1	1	42	46	11.9999
(...	chr1:45278995-45279290(+)$1	1	74	78	11.9999
..))	chr3:48460610-48460872(-)$1	1	40	44	11.9999
))).	chr9:111680969-111681245(-)$1	1	200	204	11.9999
.)))	chr7:148984631-148985022(+)$1	1	53	57	11.9999
..).	chr21:34143740-34144183(-)$1	1	92	96	11.9999
(((.	chr5:881119-881409(-)$1	1	78	82	11.9999
((((	chr5:140044356-140044845(+)$1	1	6	10	11.9999
))..	chr2:85769617-85769900(+)$1	1	134	138	11.9999
....	chr5:179153579-179153784(+)$1	1	151	155	11.9999
))))	chr17:8170273-8170570(+)$1	1	21	25	11.9999
((((	chr19:39195483-39195731(+)$1	1	31	35	11.9999
))((	chr3:183882010-183882273(+)$1	1	56	60	11.9999
))))	chr1:153634756-153635075(-)$1	1	132	136	11.9999
....	chr2:232325473-232325677(-)$1	1	186	190	11.9999
((((	chr17:75488960-75489175(+)$1	1	47	51	11.9999
.)))	chr3:184081214-184081465(+)$1	1	84	88	11.9999
(..(	chr14:24108956-24109179(+)$1	1	152	156	11.9999
(...	chr17:48628920-48629174(+)$1	1	141	145	11.9999
..((	chr12:133362847-133363117(-)$1	1	3	7	11.9999
))))	chr11:18610048-18610351(-)$1	1	165	169	11.9999
.(((	chr15:28517951-28518230(-)$1	1	41	45	11.9999
(((.	chr16:89865472-89865729(-)$1	1	121	125	11.9999
((((	chr1:16891206-16891510(-)$1	1	8	12	11.9999
))))	chr16:722159-722423(+)$1	1	107	111	11.9999
(.((	chrX:54584874-54585162(+)$1	1	128	132	11.9999

#PSSM
G : 0.91	g : 0.08	
A : 0.91	a : 0.08	
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	

#score	1115.9999999999998
#seq	93
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_UTR_m1_run1.nuc.txt

#NT
UGGUGGGG	chr7:123180736-123180989(-)$1	253	198	206	16.8676
GGGUGGGU	chr11:67379598-67379837(+)$1	239	167	175	16.5735
GGGUGGGC	chr1:156109470-156109770(+)$1	300	171	179	16.6470
GGGUGGgg	chr17:5346265-5346537(-)$1	272	94	102	20.9117
gggugggg	chrX:153609559-153609817(+)$1	258	69	77	20.9117
GGGUGGGC	chr19:2232080-2232359(+)$1	279	82	90	16.6470
GGGUGGGG	chr6:26123545-26123783(-)$1	238	169	177	20.9117
UGGUGGGG	chr8:145617871-145618139(+)$1	268	70	78	16.8676
GGGUGGGG	chr16:30681956-30682205(+)$1	249	217	225	20.9117
GGGUGGGG	chr12:125398628-125398884(-)$1	256	227	235	20.9117
GGGUCGGG	chr17:7476527-7476763(+)$1	236	137	145	16.5735
GGGUGGGU	chr19:54711122-54711363(+)$1	241	56	64	16.5735
GGGUAGGG	chr17:79993818-79994098(-)$1	280	87	95	16.7205
GGGUGGAG	chr1:156219098-156219372(-)$1	274	156	164	16.6470
GGGUGGGG	chr19:45650191-45650433(+)$1	242	93	101	20.9117
UGGUGGGG	chr11:770449-770713(-)$1	264	236	244	16.8676
GGGUGGGC	chr17:76122889-76123200(-)$1	311	93	101	16.6470
UGGUGGGG	chr20:32263649-32263915(-)$1	266	153	161	16.8676
GGGUGAGG	chr1:1431246-1431590(+)$1	344	35	43	16.4999
GGGUGGGG	chr19:1472443-1472696(-)$1	253	92	100	20.9117
GGGUGGGG	chr8:101963115-101963357(-)$1	242	33	41	20.9117
GGGUGUGG	chr19:1227712-1228044(+)$1	332	242	250	16.4999
GGGUGUGG	chrX:152935326-152935571(-)$1	245	100	108	16.4999
GGGUGGGG	chr6:26123501-26123745(-)$1	244	131	139	20.9117
GGGUGGGG	chr9:139566911-139567168(+)$1	257	160	168	20.9117
GGUUGGGG	chrX:70362104-70362359(+)$1	255	52	60	16.4264
GGGUGGAG	chr12:123467264-123467527(+)$1	263	106	114	16.6470
GGGUGGGG	chr12:56554870-56555130(+)$1	260	91	99	20.9117
GGGUGGAG	chr22:20100027-20100296(-)$1	269	95	103	16.6470
GGGUGGAG	chr19:2426206-2426436(-)$1	230	179	187	16.6470
GGGUGGGG	chr19:18547582-18547850(-)$1	268	88	96	20.9117
GGGUGGGG	chr3:9519600-9519878(+)$1	278	92	100	20.9117
UGGUGGGG	chr19:3208802-3209109(+)$1	307	190	198	16.8676
gggugggg	chrX:153609547-153609759(+)$1	212	81	89	20.9117
GGGUGGGG	chr9:139566817-139567081(+)$1	264	254	262	20.9117
AGGUGGGG	chr19:5140924-5141198(+)$1	274	79	87	16.6470
GGGUGGGG	chr11:252679-252983(+)$1	304	16	24	20.9117
GGGUGCGG	chr4:78078360-78078621(+)$1	261	48	56	16.4999
gggagggg	chr16:88712100-88712387(-)$1	287	107	115	16.4264
GGCUGGGG	chr11:67379512-67379786(+)$1	274	34	42	16.4264
GGGUGGGG	chr11:62392224-62392471(-)$1	247	42	50	20.9117
GGGUGGGG	chr16:1413739-1414066(-)$1	327	186	194	20.9117
GGGUGAGG	chr6:33377464-33377719(+)$1	255	84	92	16.4999
GGGUGGGG	chr19:41889442-41889750(+)$1	308	102	110	20.9117
GGGUGGGG	chr19:50363554-50363824(+)$1	270	89	97	20.9117
GGGUGGGG	chr19:12811275-12811557(-)$1	282	87	95	20.9117
GGGUGGAG	chr19:47222901-47223172(-)$1	271	136	144	16.6470
GGGUUGGG	chr12:125398881-125399150(-)$1	269	145	153	16.4999
GGGAGGGG	chr17:72858733-72858971(-)$1	238	77	85	16.4264
GGGUGGGG	chr2:220403043-220403315(+)$1	272	65	73	20.9117
GGGUGGGA	chr6:32948481-32948796(+)$1	315	278	286	16.5735
GGGUAGGG	chr19:50162936-50163186(-)$1	250	136	144	16.7205
CGGUGGGG	chr17:79991719-79991993(+)$1	274	86	94	16.5735
AGGUGGGG	chr17:7127405-7127660(+)$1	255	10	18	16.6470
GGCUGGGG	chrX:53221729-53221980(-)$1	251	118	126	16.4264
GGGUAGGG	chr16:67862303-67862563(-)$1	260	12	20	16.7205
GGAUGGGG	chr11:66394464-66394696(+)$1	232	8	16	16.3529
GGUUGGGG	chr19:2270197-2270445(+)$1	248	23	31	16.4264
GGGUGGGG	chr12:56632208-56632445(-)$1	237	187	195	20.9117
GGGUAGGG	chr16:67862465-67862731(-)$1	266	180	188	16.7205
GGGUGGGG	chr17:73823401-73823770(-)$1	369	97	105	20.9117
GGGUGGGA	chr19:9960077-9960340(+)$1	263	40	48	16.5735
GGGUCGGG	chr9:140005100-140005335(-)$1	235	35	43	16.5735
gggugcgg	chr5:154136583-154136861(+)$1	278	57	65	16.4999
GGGUGGGG	chr5:154136739-154137002(+)$1	263	221	229	20.9117
GGGGGGGG	chr17:7477047-7477298(+)$1	251	56	64	16.2794
GGGUGGGG	chr16:778878-779142(+)$1	264	45	53	20.9117

#otherMatches

#Struct PSSM
gg"""ccc	chr17:8062574-8062837(-)$1	263	131	139	16.4264
?BB}JJJJ	chr7:123180736-123180989(-)$1	253	198	206	16.8676
iiiiiiEE	chr11:67379598-67379837(+)$1	239	167	175	16.5735
FFFGGGGG	chr1:156109470-156109770(+)$1	300	171	179	16.6470
JJJJJLLL	chr17:5346265-5346537(-)$1	272	94	102	20.9117
ccc!!===	chrX:153609559-153609817(+)$1	258	69	77	20.9117
LA{IIIII	chr19:2232080-2232359(+)$1	279	82	90	16.6470
D}BBYYCC	chr6:26123545-26123783(-)$1	238	169	177	20.9117
[eeeee!!	chr8:145617871-145618139(+)$1	268	70	78	16.8676
CC}FFFFF	chr16:30681956-30682205(+)$1	249	217	225	20.9117
=======b	chr12:125398628-125398884(-)$1	256	227	235	20.9117
qeeeee]b	chr17:7476527-7476763(+)$1	236	137	145	16.5735
DDD{EEEE	chr19:54711122-54711363(+)$1	241	56	64	16.5735
ddddffff	chr17:79993818-79994098(-)$1	280	87	95	16.7205
gggggg[c	chr1:156219098-156219372(-)$1	274	156	164	16.6470
"""hhhhh	chr19:45650191-45650433(+)$1	242	93	101	20.9117
gggggggc	chr11:770449-770713(-)$1	264	236	244	16.8676
ggggDDDD	chr17:76122889-76123200(-)$1	311	93	101	16.6470
ZZIIIIII	chr20:32263649-32263915(-)$1	266	153	161	16.8676
hhhhh:HH	chr1:1431246-1431590(+)$1	344	35	43	16.4999
33hhhhhh	chr19:1472443-1472696(-)$1	253	92	100	20.9117
ssssgggg	chr8:101963115-101963357(-)$1	242	33	41	20.9117
dddd!!dd	chr19:1227712-1228044(+)$1	332	242	250	16.4999
cDDDD{DD	chrX:152935326-152935571(-)$1	245	100	108	16.4999
dddd[eee	chr6:26123501-26123745(-)$1	244	131	139	20.9117
DDDD}DDD	chr9:139566911-139567168(+)$1	257	160	168	20.9117
eeeeeeed	chrX:70362104-70362359(+)$1	255	52	60	16.4264
gggggagg	chr12:123467264-123467527(+)$1	263	106	114	16.6470
ccc]gggg	chr12:56554870-56555130(+)$1	260	91	99	20.9117
eeee]ddd	chr22:20100027-20100296(-)$1	269	95	103	16.6470
gggggggE	chr19:2426206-2426436(-)$1	230	179	187	16.6470
gg!!a[ii	chr19:18547582-18547850(-)$1	268	88	96	20.9117
fffff%%%	chr3:9519600-9519878(+)$1	278	92	100	20.9117
2ffffffc	chr19:3208802-3209109(+)$1	307	190	198	16.8676
ccc!!===	chrX:153609547-153609759(+)$1	212	81	89	20.9117
HHHHHHHH	chr9:139566817-139567081(+)$1	264	254	262	20.9117
444bb]dd	chr19:5140924-5141198(+)$1	274	79	87	16.6470
JJJJJJJJ	chr11:252679-252983(+)$1	304	16	24	20.9117
JJJJJJJJ	chr4:78078360-78078621(+)$1	261	48	56	16.4999
cc333ddd	chr16:88712100-88712387(-)$1	287	107	115	16.4264
bb!!a[a[	chr11:67379512-67379786(+)$1	274	34	42	16.4264
::ccc[a[	chr11:62392224-62392471(-)$1	247	42	50	20.9117
iiiiiii]	chr16:1413739-1414066(-)$1	327	186	194	20.9117
ppbb]ccc	chr6:33377464-33377719(+)$1	255	84	92	16.4999
======::	chr19:41889442-41889750(+)$1	308	102	110	20.9117
hhbb"""c	chr19:50363554-50363824(+)$1	270	89	97	20.9117
ffff"""d	chr19:12811275-12811557(-)$1	282	87	95	20.9117
FFFFFF{D	chr19:47222901-47223172(-)$1	271	136	144	16.6470
eeee::::	chr12:125398881-125399150(-)$1	269	145	153	16.4999
JJJJJJJ:	chr17:72858733-72858971(-)$1	238	77	85	16.4264
DDDDKKHH	chr2:220403043-220403315(+)$1	272	65	73	20.9117
FFF}DDDD	chr6:32948481-32948796(+)$1	315	278	286	16.5735
:CCC{GGG	chr19:50162936-50163186(-)$1	250	136	144	16.7205
========	chr17:79991719-79991993(+)$1	274	86	94	16.5735
eeeccc!!	chr17:7127405-7127660(+)$1	255	10	18	16.6470
EEEKKBB{	chrX:53221729-53221980(-)$1	251	118	126	16.4264
DDDDDDD{	chr16:67862303-67862563(-)$1	260	12	20	16.7205
DDDDKKCC	chr11:66394464-66394696(+)$1	232	8	16	16.3529
VVVVVVVV	chr19:2270197-2270445(+)$1	248	23	31	16.4264
HHHHHHH}	chr12:56632208-56632445(-)$1	237	187	195	20.9117
DDZZZDDD	chr16:67862465-67862731(-)$1	266	180	188	16.7205
fff]====	chr17:73823401-73823770(-)$1	369	97	105	20.9117
JJJJJJJJ	chr19:9960077-9960340(+)$1	263	40	48	16.5735
CCCKKGGG	chr9:140005100-140005335(-)$1	235	35	43	16.5735
[aeeeee[	chr5:154136583-154136861(+)$1	278	57	65	16.4999
ccc[hhhh	chr5:154136739-154137002(+)$1	263	221	229	20.9117
eeoooooo	chr17:7477047-7477298(+)$1	251	56	64	16.2794
rrdddd]i	chr16:778878-779142(+)$1	264	45	53	20.9117

#DB
((...(((	chr17:8062574-8062837(-)$1	1	131	139	16.4264
.)).))))	chr7:123180736-123180989(-)$1	1	198	206	16.8676
))))))))	chr11:67379598-67379837(+)$1	1	167	175	16.5735
))))))))	chr1:156109470-156109770(+)$1	1	171	179	16.6470
(((((...	chr17:5346265-5346537(-)$1	1	94	102	20.9117
(((..(((	chrX:153609559-153609817(+)$1	1	69	77	20.9117
.(.(((((	chr19:2232080-2232359(+)$1	1	82	90	16.6470
).))..))	chr6:26123545-26123783(-)$1	1	169	177	20.9117
.(((((..	chr8:145617871-145618139(+)$1	1	70	78	16.8676
)).)))))	chr16:30681956-30682205(+)$1	1	217	225	20.9117
)))))))(	chr12:125398628-125398884(-)$1	1	227	235	20.9117
.))))).)	chr17:7476527-7476763(+)$1	1	137	145	16.5735
(((.((((	chr19:54711122-54711363(+)$1	1	56	64	16.5735
((((((((	chr17:79993818-79994098(-)$1	1	87	95	16.7205
((((((.(	chr1:156219098-156219372(-)$1	1	156	164	16.6470
...(((((	chr19:45650191-45650433(+)$1	1	93	101	20.9117
))))))))	chr11:770449-770713(-)$1	1	236	244	16.8676
))))((((	chr17:76122889-76123200(-)$1	1	93	101	16.6470
..))))))	chr20:32263649-32263915(-)$1	1	153	161	16.8676
))))).((	chr1:1431246-1431590(+)$1	1	35	43	16.4999
..))))))	chr19:1472443-1472696(-)$1	1	92	100	20.9117
....))))	chr8:101963115-101963357(-)$1	1	33	41	20.9117
((((..((	chr19:1227712-1228044(+)$1	1	242	250	16.4999
)((((.((	chrX:152935326-152935571(-)$1	1	100	108	16.4999
((((.(((	chr6:26123501-26123745(-)$1	1	131	139	20.9117
)))).)))	chr9:139566911-139567168(+)$1	1	160	168	20.9117
)))))))(	chrX:70362104-70362359(+)$1	1	52	60	16.4264
((((((((	chr12:123467264-123467527(+)$1	1	106	114	16.6470
))).))))	chr12:56554870-56555130(+)$1	1	91	99	20.9117
)))).)))	chr22:20100027-20100296(-)$1	1	95	103	16.6470
))))))))	chr19:2426206-2426436(-)$1	1	179	187	16.6470
((..(.((	chr19:18547582-18547850(-)$1	1	88	96	20.9117
(((((...	chr3:9519600-9519878(+)$1	1	92	100	20.9117
.)))))))	chr19:3208802-3209109(+)$1	1	190	198	16.8676
(((..(((	chrX:153609547-153609759(+)$1	1	81	89	20.9117
))))))))	chr9:139566817-139567081(+)$1	1	254	262	20.9117
...)).))	chr19:5140924-5141198(+)$1	1	79	87	16.6470
((((((((	chr11:252679-252983(+)$1	1	16	24	20.9117
((((((((	chr4:78078360-78078621(+)$1	1	48	56	16.4999
))...)))	chr16:88712100-88712387(-)$1	1	107	115	16.4264
((..(.(.	chr11:67379512-67379786(+)$1	1	34	42	16.4264
..(((.(.	chr11:62392224-62392471(-)$1	1	42	50	20.9117
))))))).	chr16:1413739-1414066(-)$1	1	186	194	20.9117
..)).)))	chr6:33377464-33377719(+)$1	1	84	92	16.4999
))))))..	chr19:41889442-41889750(+)$1	1	102	110	20.9117
))((...(	chr19:50363554-50363824(+)$1	1	89	97	20.9117
((((...(	chr19:12811275-12811557(-)$1	1	87	95	20.9117
((((((.(	chr19:47222901-47223172(-)$1	1	136	144	16.6470
))))....	chr12:125398881-125399150(-)$1	1	145	153	16.4999
(((((((.	chr17:72858733-72858971(-)$1	1	77	85	16.4264
((((..((	chr2:220403043-220403315(+)$1	1	65	73	20.9117
))).))))	chr6:32948481-32948796(+)$1	1	278	286	16.5735
.(((.(((	chr19:50162936-50163186(-)$1	1	136	144	16.7205
((((((((	chr17:79991719-79991993(+)$1	1	86	94	16.5735
((((((..	chr17:7127405-7127660(+)$1	1	10	18	16.6470
(((..((.	chrX:53221729-53221980(-)$1	1	118	126	16.4264
(((((((.	chr16:67862303-67862563(-)$1	1	12	20	16.7205
((((..((	chr11:66394464-66394696(+)$1	1	8	16	16.3529
........	chr19:2270197-2270445(+)$1	1	23	31	16.4264
))))))).	chr12:56632208-56632445(-)$1	1	187	195	20.9117
))...)))	chr16:67862465-67862731(-)$1	1	180	188	16.7205
))).))))	chr17:73823401-73823770(-)$1	1	97	105	20.9117
((((((((	chr19:9960077-9960340(+)$1	1	40	48	16.5735
(((..(((	chr9:140005100-140005335(-)$1	1	35	43	16.5735
.((((((.	chr5:154136583-154136861(+)$1	1	57	65	16.4999
(((.((((	chr5:154136739-154137002(+)$1	1	221	229	20.9117
((......	chr17:7477047-7477298(+)$1	1	56	64	16.2794
..)))).)	chr16:778878-779142(+)$1	1	45	53	20.9117

#PSSM
G : 0.82	U : 0.07	g : 0.05	A : 0.02	C : 0.01	
G : 0.94	g : 0.05	
G : 0.86	g : 0.05	U : 0.02	C : 0.02	A : 0.01	
U : 0.89	u : 0.04	A : 0.02	a : 0.01	G : 0.01	
G : 0.83	g : 0.05	A : 0.05	C : 0.02	U : 0.01	
G : 0.86	g : 0.04	A : 0.02	U : 0.02	C : 0.01	c : 0.01	
G : 0.85	g : 0.07	A : 0.07	
G : 0.82	g : 0.07	C : 0.04	U : 0.02	A : 0.02	

#score	1240.5294117647047
#seq	68
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_CDS_m2_run2.nuc.txt

#NT
AAGGAGAAGAA	chr19:2328317-2328564(-)$1	247	91	102	22.7222
AGGAUGAAGAA	chr15:69072648-69072912(-)$1	264	101	112	22.7222
aagaagaagaa	chr4:174253152-174253375(-)$1	223	58	69	27.1666
aagaagaagaa	chr12:6878990-6879265(+)$1	275	121	132	27.1666
AAGAAGAAGAA	chr16:2808893-2809149(+)$1	256	138	149	27.1666
aagaagaagaa	chr14:102550990-102551265(-)$1	275	86	97	27.1666
AAGAAAAAGAA	chr6:99849282-99849547(-)$1	265	212	223	22.7222
AGGAUGAAGAA	chr6:7310045-7310363(-)$1	318	131	142	22.7222
AAAAAGAAGAA	chr7:104783439-104783823(-)$1	384	6	17	22.9074
AAGAGGAAGUA	chr5:134113160-134113466(+)$1	306	196	207	21.0555
AAGAAAAAGAA	chr20:39713036-39713307(+)$1	271	128	139	22.7222
aagaagaagaa	chr14:102550922-102551190(-)$1	268	11	22	27.1666
AAGUAGAAGAA	chr17:48820972-48821274(+)$1	302	119	130	22.6296
aagaagaggaa	chr19:14199895-14200272(-)$1	377	126	137	22.9999
aagaagaagaa	chr14:23528454-23528775(-)$1	321	156	167	27.1666
AGGAAGAUGAA	chr12:104340493-104340728(+)$1	235	68	79	20.7777
uagaggaagaa	chr17:4575288-4575634(-)$1	346	173	184	20.7777
aagaagaagaa	chr5:891654-891903(-)$1	249	83	94	27.1666
aggaugaagaa	chr1:150195411-150195665(-)$1	254	97	108	22.7222
AAGGAGAAGAA	chr19:2328364-2328578(-)$1	214	105	116	22.7222
AAAAAGAAGAA	chr10:70520836-70521050(+)$1	214	30	41	22.9074
AGGAAGAAGUA	chr7:104681282-104681591(+)$1	309	251	262	20.5925
aggaggaagaa	chr1:145456890-145457197(-)$1	307	166	177	23.1851
AAGAGGAAGAA	chr7:127975841-127976150(-)$1	309	126	137	25.4074
AAGAGGAAGUA	chr2:48025688-48025961(+)$1	273	116	127	21.0555
aagcugaagaA	chr5:170827056-170827269(+)$1	213	129	140	20.4074
aagaagaagaa	chr6:44217997-44218207(+)$1	210	174	185	27.1666
aggaggaagaa	chr9:100777576-100777798(+)$1	222	69	80	23.1851
aagaugaagaa	chr2:232325278-232325523(-)$1	245	39	50	24.9444
AAGAAGUAGAA	chr12:104333186-104333404(+)$1	218	167	178	22.3518
aggaggaagaa	chr9:100777550-100777776(+)$1	226	95	106	23.1851
AAAAAGAAGAA	chr5:33445329-33445616(+)$1	287	136	147	22.9074
CGGAAGAAGAA	chr12:76453476-76453689(-)$1	213	65	76	20.3148
aagaagaagaa	chr6:44217972-44218197(+)$1	225	199	210	27.1666
aagaagaagaa	chr17:65899801-65900144(+)$1	343	171	182	27.1666
aagaagaagaa	chr6:44218171-44218410(+)$1	239	0	11	27.1666
AGGAAGAAGGA	chr15:40488685-40489029(+)$1	344	119	130	20.4074
aggaggaagaa	chr9:100777601-100777856(+)$1	255	44	55	23.1851
AAGAGGAAGAA	chr1:36216769-36217091(-)$1	322	113	124	25.4074
AAGAGGAGGAA	chr1:35653472-35653749(-)$1	277	60	71	21.2407
AAGAAGAACAA	chr3:170584050-170584361(-)$1	311	79	90	22.3518
AGGAAGAAGAA	chr10:103558854-103559206(-)$1	352	156	167	24.9444
AAGAUGAAGAA	chr7:156743123-156743519(+)$1	396	242	253	24.9444
AAGAAGAUGAA	chr7:156626368-156626590(-)$1	222	110	121	22.9999
AAAAUGAAGAA	chr5:95087842-95088112(+)$1	270	145	156	20.6851
aagaggaggaa	chr2:99992845-99993131(+)$1	286	57	68	21.2407
aagaggaagaa	chr17:48823045-48823374(+)$1	329	165	176	25.4074
aggaggaagaa	chr9:100777545-100777748(+)$1	203	100	111	23.1851
AAGAUGAAGAA	chr8:17868666-17868974(+)$1	308	173	184	24.9444
GAGAAGAAGAA	chr7:91708445-91708751(+)$1	306	35	46	22.5370
AAGAAGAAGAA	chr9:131036053-131036352(-)$1	299	152	163	27.1666
AGGAAGAUGAA	chr12:104340345-104340573(+)$1	228	216	227	20.7777
AGGAAGAAGAA	chr3:196214164-196214498(-)$1	334	74	85	24.9444

#otherMatches

#Struct PSSM
::::::dddde	chr16:2813224-2813485(+)$1	261	79	90	19.8518
GGGGGG:::::	chr19:2328317-2328564(-)$1	247	91	102	22.7222
''cccpppppp	chr15:69072648-69072912(-)$1	264	101	112	22.7222
::::::::::D	chr4:174253152-174253375(-)$1	223	58	69	27.1666
:::::::::::	chr12:6878990-6879265(+)$1	275	121	132	27.1666
:==========	chr16:2808893-2809149(+)$1	256	138	149	27.1666
^^^^^^^^^^^	chr14:102550990-102551265(-)$1	275	86	97	27.1666
:::::::::::	chr6:99849282-99849547(-)$1	265	212	223	22.7222
+++++++++++	chr6:7310045-7310363(-)$1	318	131	142	22.7222
nnnnndddd::	chr7:104783439-104783823(-)$1	384	6	17	22.9074
^^^^^^^^^^^	chr5:134113160-134113466(+)$1	306	196	207	21.0555
:::::::::::	chr20:39713036-39713307(+)$1	271	128	139	22.7222
BFFFFFFDDDD	chr14:102550922-102551190(-)$1	268	11	22	27.1666
:::::::::::	chr17:48820972-48821274(+)$1	302	119	130	22.6296
ccc::EEEEE}	chr19:14199895-14200272(-)$1	377	126	137	22.9999
vvvvvvvvvvv	chr14:23528454-23528775(-)$1	321	156	167	27.1666
=========ee	chr12:104340493-104340728(+)$1	235	68	79	20.7777
:::::::::::	chr17:4575288-4575634(-)$1	346	173	184	20.7777
:::::::::::	chr5:891654-891903(-)$1	249	83	94	27.1666
bb22ffffff:	chr1:150195411-150195665(-)$1	254	97	108	22.7222
rrbb]bb8888	chr19:2328364-2328578(-)$1	214	105	116	22.7222
::::::FFFFF	chr10:70520836-70521050(+)$1	214	30	41	22.9074
==========[	chr7:104681282-104681591(+)$1	309	251	262	20.5925
{EEEEEKKBB:	chr1:145456890-145457197(-)$1	307	166	177	23.1851
@@@@@@@@@II	chr7:127975841-127976150(-)$1	309	126	137	25.4074
"""cccqqqqq	chr2:48025688-48025961(+)$1	273	116	127	21.0555
22a]a]dddd2	chr5:170827056-170827269(+)$1	213	129	140	20.4074
:::::::::::	chr6:44217997-44218207(+)$1	210	174	185	27.1666
ggg22bb333c	chr9:100777576-100777798(+)$1	222	69	80	23.1851
mmmbb::::::	chr2:232325278-232325523(-)$1	245	39	50	24.9444
22eeeee::::	chr12:104333186-104333404(+)$1	218	167	178	22.3518
ggg22bb333c	chr9:100777550-100777776(+)$1	226	95	106	23.1851
iiiiidddd$$	chr5:33445329-33445616(+)$1	287	136	147	22.9074
>>ggggggg22	chr12:76453476-76453689(-)$1	213	65	76	20.3148
:::::::::::	chr6:44217972-44218197(+)$1	225	199	210	27.1666
EEEE}EEEEEY	chr17:65899801-65900144(+)$1	343	171	182	27.1666
:::::::::::	chr6:44218171-44218410(+)$1	239	0	11	27.1666
OOOOOHHHHHH	chr15:40488685-40489029(+)$1	344	119	130	20.4074
ggg22bb333c	chr9:100777601-100777856(+)$1	255	44	55	23.1851
:::::::::::	chr1:36216769-36217091(-)$1	322	113	124	25.4074
EEEMMMMCCC{	chr1:35653472-35653749(-)$1	277	60	71	21.2407
##dddd!!eee	chr3:170584050-170584361(-)$1	311	79	90	22.3518
ddd::::::::	chr10:103558854-103559206(-)$1	352	156	167	24.9444
((((((((bb"	chr7:156743123-156743519(+)$1	396	242	253	24.9444
"""ffffff""	chr7:156626368-156626590(-)$1	222	110	121	22.9999
7777ffffff5	chr5:95087842-95088112(+)$1	270	145	156	20.6851
:::::::GGGG	chr2:99992845-99993131(+)$1	286	57	68	21.2407
:::::::::::	chr17:48823045-48823374(+)$1	329	165	176	25.4074
ggg22bb333c	chr9:100777545-100777748(+)$1	203	100	111	23.1851
fff[eeeee""	chr8:17868666-17868974(+)$1	308	173	184	24.9444
DDDD:::::::	chr7:91708445-91708751(+)$1	306	35	46	22.5370
hhhhhh]bb22	chr9:131036053-131036352(-)$1	299	152	163	27.1666
=========::	chr12:104340345-104340573(+)$1	228	216	227	20.7777
GGGG:::::::	chr3:196214164-196214498(-)$1	334	74	85	24.9444

#DB
......(((((	chr16:2813224-2813485(+)$1	1	79	90	19.8518
((((((.....	chr19:2328317-2328564(-)$1	1	91	102	22.7222
..(((......	chr15:69072648-69072912(-)$1	1	101	112	22.7222
..........)	chr4:174253152-174253375(-)$1	1	58	69	27.1666
...........	chr12:6878990-6879265(+)$1	1	121	132	27.1666
.((((((((((	chr16:2808893-2809149(+)$1	1	138	149	27.1666
...........	chr14:102550990-102551265(-)$1	1	86	97	27.1666
...........	chr6:99849282-99849547(-)$1	1	212	223	22.7222
...........	chr6:7310045-7310363(-)$1	1	131	142	22.7222
.....))))..	chr7:104783439-104783823(-)$1	1	6	17	22.9074
...........	chr5:134113160-134113466(+)$1	1	196	207	21.0555
...........	chr20:39713036-39713307(+)$1	1	128	139	22.7222
(((((((((((	chr14:102550922-102551190(-)$1	1	11	22	27.1666
...........	chr17:48820972-48821274(+)$1	1	119	130	22.6296
)))..))))).	chr19:14199895-14200272(-)$1	1	126	137	22.9999
...........	chr14:23528454-23528775(-)$1	1	156	167	27.1666
)))))))))((	chr12:104340493-104340728(+)$1	1	68	79	20.7777
...........	chr17:4575288-4575634(-)$1	1	173	184	20.7777
...........	chr5:891654-891903(-)$1	1	83	94	27.1666
))..)))))).	chr1:150195411-150195665(-)$1	1	97	108	22.7222
..)).))....	chr19:2328364-2328578(-)$1	1	105	116	22.7222
......(((((	chr10:70520836-70521050(+)$1	1	30	41	22.9074
((((((((((.	chr7:104681282-104681591(+)$1	1	251	262	20.5925
.(((((..((.	chr1:145456890-145457197(-)$1	1	166	177	23.1851
.........))	chr7:127975841-127976150(-)$1	1	126	137	25.4074
...(((.....	chr2:48025688-48025961(+)$1	1	116	127	21.0555
..).).)))).	chr5:170827056-170827269(+)$1	1	129	140	20.4074
...........	chr6:44217997-44218207(+)$1	1	174	185	27.1666
)))..))...)	chr9:100777576-100777798(+)$1	1	69	80	23.1851
...))......	chr2:232325278-232325523(-)$1	1	39	50	24.9444
..)))))....	chr12:104333186-104333404(+)$1	1	167	178	22.3518
)))..))...)	chr9:100777550-100777776(+)$1	1	95	106	23.1851
)))))((((..	chr5:33445329-33445616(+)$1	1	136	147	22.9074
..)))))))..	chr12:76453476-76453689(-)$1	1	65	76	20.3148
...........	chr6:44217972-44218197(+)$1	1	199	210	27.1666
)))).))))).	chr17:65899801-65900144(+)$1	1	171	182	27.1666
...........	chr6:44218171-44218410(+)$1	1	0	11	27.1666
.....((((((	chr15:40488685-40489029(+)$1	1	119	130	20.4074
)))..))...)	chr9:100777601-100777856(+)$1	1	44	55	23.1851
...........	chr1:36216769-36217091(-)$1	1	113	124	25.4074
(((....(((.	chr1:35653472-35653749(-)$1	1	60	71	21.2407
..((((..(((	chr3:170584050-170584361(-)$1	1	79	90	22.3518
)))........	chr10:103558854-103559206(-)$1	1	156	167	24.9444
........((.	chr7:156743123-156743519(+)$1	1	242	253	24.9444
...((((((..	chr7:156626368-156626590(-)$1	1	110	121	22.9999
....)))))).	chr5:95087842-95088112(+)$1	1	145	156	20.6851
.......((((	chr2:99992845-99993131(+)$1	1	57	68	21.2407
...........	chr17:48823045-48823374(+)$1	1	165	176	25.4074
)))..))...)	chr9:100777545-100777748(+)$1	1	100	111	23.1851
(((.(((((..	chr8:17868666-17868974(+)$1	1	173	184	24.9444
((((.......	chr7:91708445-91708751(+)$1	1	35	46	22.5370
)))))).))..	chr9:131036053-131036352(-)$1	1	152	163	27.1666
)))))))))..	chr12:104340345-104340573(+)$1	1	216	227	20.7777
((((.......	chr3:196214164-196214498(-)$1	1	74	85	24.9444

#PSSM
A : 0.55	a : 0.38	u : 0.01	C : 0.01	G : 0.01	
A : 0.42	a : 0.29	G : 0.16	g : 0.11	
G : 0.51	g : 0.40	A : 0.07	
A : 0.53	a : 0.38	G : 0.03	U : 0.01	c : 0.01	
A : 0.38	a : 0.20	g : 0.14	U : 0.09	G : 0.09	u : 0.05	C : 0.01	
G : 0.53	g : 0.40	A : 0.05	
A : 0.57	a : 0.40	U : 0.01	
A : 0.51	a : 0.37	U : 0.05	g : 0.03	G : 0.01	
G : 0.57	g : 0.40	C : 0.01	
A : 0.51	a : 0.40	U : 0.05	G : 0.01	
A : 0.61	a : 0.38	

#score	1275.703703703703
#seq	54
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_transcript_m3_run2.nuc.txt

#NT
CCUU	chr17:56167543-56167797(+)$1	254	20	24	11.9999
CCUU	chr11:404638-404931(+)$1	293	281	285	11.9999
CCUU	chr19:11664184-11664525(-)$1	341	282	286	11.9999
ccuu	chr11:65739057-65739453(+)$1	396	327	331	11.9999
CCUU	chr19:55741458-55741724(-)$1	266	173	177	11.9999
CCUU	chr3:133307563-133307789(+)$1	226	146	150	11.9999
CCUU	chr1:45480566-45480779(+)$1	213	95	99	11.9999
CCUU	chr19:11561610-11561862(+)$1	252	15	19	11.9999
CCUU	chr20:3018759-3019145(+)$1	386	53	57	11.9999
CCUU	chr12:56437045-56437265(+)$1	220	95	99	11.9999
CCUU	chr16:1399228-1399528(-)$1	300	291	295	11.9999
CCUU	chr7:44507410-44507624(+)$1	214	102	106	11.9999
CCUU	chr1:161071772-161071998(-)$1	226	18	22	11.9999
CCUU	chr6:71108957-71109196(+)$1	239	104	108	11.9999
CCUU	chr3:184052576-184052888(+)$1	312	53	57	11.9999
CCUU	chr12:6978434-6978655(+)$1	221	139	143	11.9999
CCUU	chr17:49232995-49233241(+)$1	246	39	43	11.9999
CCUU	chr11:62533936-62534193(+)$1	257	60	64	11.9999
CCUU	chr3:128888926-128889151(-)$1	225	90	94	11.9999
CCUU	chr7:155101156-155101409(+)$1	253	29	33	11.9999
CCUU	chr2:73479812-73480153(+)$1	341	228	232	11.9999
CCUU	chr7:99057635-99057893(-)$1	258	192	196	11.9999
CCUU	chr21:40547298-40547602(-)$1	304	4	8	11.9999
CCUU	chr3:128888951-128889204(-)$1	253	143	147	11.9999
CCUU	chr11:46405160-46405429(+)$1	269	15	19	11.9999
CCUU	chr19:3052979-3053219(-)$1	240	34	38	11.9999
CCUU	chr12:53692970-53693228(+)$1	258	1	5	11.9999
CCUU	chr2:85133038-85133278(+)$1	240	70	74	11.9999
CCUU	chr2:176043788-176044078(-)$1	290	73	77	11.9999
CCUU	chr11:404731-404982(+)$1	251	188	192	11.9999
CCUU	chr12:57038862-57039096(-)$1	234	172	176	11.9999
CCUU	chr19:36145430-36145673(+)$1	243	29	33	11.9999
CCUU	chr3:195778848-195779112(-)$1	264	36	40	11.9999
CCUU	chr22:41641534-41641778(-)$1	244	96	100	11.9999
CCUU	chr8:101734003-101734236(-)$1	233	185	189	11.9999
CCUU	chr20:60963413-60963656(+)$1	243	80	84	11.9999
CCUU	chr19:8386736-8386953(+)$1	217	48	52	11.9999
CCUU	chr3:120320995-120321255(+)$1	260	206	210	11.9999
CCUU	chr19:42364256-42364459(+)$1	203	69	73	11.9999
CCUU	chr1:203823039-203823285(+)$1	246	44	48	11.9999
CCUU	chr11:824987-825292(+)$1	305	66	70	11.9999
CCUU	chr1:879501-879747(-)$1	246	38	42	11.9999
CCUU	chr12:56553942-56554204(+)$1	262	4	8	11.9999
CCUU	chr17:47490503-47490754(-)$1	251	46	50	11.9999
CCUU	chr3:128338719-128338963(-)$1	244	47	51	11.9999
CCUU	chr19:17972001-17972218(+)$1	217	72	76	11.9999
cCUU	chr4:100870762-100870997(-)$1	235	42	46	11.9999
CCUU	chr1:84967407-84967625(-)$1	218	63	67	11.9999
CCUU	chr22:41368434-41368752(+)$1	318	287	291	11.9999
CCUU	chr19:38873960-38874212(+)$1	252	170	174	11.9999
CCUU	chr11:5290596-5290848(-)$1	252	61	65	11.9999
CCUU	chr6:49572888-49573177(-)$1	289	165	169	11.9999
CCUU	chr17:61822877-61823136(-)$1	259	179	183	11.9999
CCUU	chr11:18429178-18429428(+)$1	250	203	207	11.9999
CCUU	chr11:315058-315352(+)$1	294	75	79	11.9999
CCUU	chr15:52843290-52843555(-)$1	265	71	75	11.9999
CCUU	chr16:28854086-28854362(-)$1	276	91	95	11.9999
CCUU	chrX:153063683-153063891(+)$1	208	88	92	11.9999
CCUU	chr21:35275677-35275971(-)$1	294	267	271	11.9999
CCUU	chr12:112460447-112460692(+)$1	245	80	84	11.9999
CCUU	chr1:245022537-245022777(-)$1	240	59	63	11.9999
CCUU	chr19:1258626-1258868(+)$1	242	15	19	11.9999
CCUU	chr11:18428625-18428886(+)$1	261	67	71	11.9999
CCUU	chr17:27076851-27077133(+)$1	282	9	13	11.9999
CCUU	chr22:36677282-36677531(-)$1	249	94	98	11.9999
CCUU	chr11:64084639-64084878(-)$1	239	151	155	11.9999
CCUU	chr21:46644312-46644592(+)$1	280	11	15	11.9999
CCUU	chr3:101405414-101405657(-)$1	243	66	70	11.9999
CCUU	chr11:5289644-5289857(-)$1	213	202	206	11.9999
CCUU	chr17:16343398-16343612(+)$1	214	174	178	11.9999
CCUU	chr16:31202716-31202973(+)$1	257	113	117	11.9999
CCUU	chr14:102547807-102548024(-)$1	217	142	146	11.9999
CCUU	chr5:256476-256795(+)$1	319	247	251	11.9999
CCUU	chr22:38075508-38075765(+)$1	257	111	115	11.9999

#otherMatches

#Struct PSSM
!bbl	chr17:36916717-36916961(+)$1	244	16	20	11.9999
GCCC	chr17:56167543-56167797(+)$1	254	20	24	11.9999
EEEE	chr11:404638-404931(+)$1	293	281	285	11.9999
DDD}	chr19:11664184-11664525(-)$1	341	282	286	11.9999
gggg	chr11:65739057-65739453(+)$1	396	327	331	11.9999
cc22	chr19:55741458-55741724(-)$1	266	173	177	11.9999
[ccc	chr3:133307563-133307789(+)$1	226	146	150	11.9999
hhhh	chr1:45480566-45480779(+)$1	213	95	99	11.9999
cc88	chr19:11561610-11561862(+)$1	252	15	19	11.9999
eeee	chr20:3018759-3019145(+)$1	386	53	57	11.9999
FFFK	chr12:56437045-56437265(+)$1	220	95	99	11.9999
GGGG	chr16:1399228-1399528(-)$1	300	291	295	11.9999
!ddd	chr7:44507410-44507624(+)$1	214	102	106	11.9999
cc!!	chr1:161071772-161071998(-)$1	226	18	22	11.9999
"""c	chr6:71108957-71109196(+)$1	239	104	108	11.9999
ffff	chr3:184052576-184052888(+)$1	312	53	57	11.9999
ccc]	chr12:6978434-6978655(+)$1	221	139	143	11.9999
pppp	chr17:49232995-49233241(+)$1	246	39	43	11.9999
eeee	chr11:62533936-62534193(+)$1	257	60	64	11.9999
cc[c	chr3:128888926-128889151(-)$1	225	90	94	11.9999
eee[	chr7:155101156-155101409(+)$1	253	29	33	11.9999
eeee	chr2:73479812-73480153(+)$1	341	228	232	11.9999
eeee	chr7:99057635-99057893(-)$1	258	192	196	11.9999
DDGG	chr21:40547298-40547602(-)$1	304	4	8	11.9999
IIII	chr3:128888951-128889204(-)$1	253	143	147	11.9999
::::	chr11:46405160-46405429(+)$1	269	15	19	11.9999
eeee	chr19:3052979-3053219(-)$1	240	34	38	11.9999
::::	chr12:53692970-53693228(+)$1	258	1	5	11.9999
ddd]	chr2:85133038-85133278(+)$1	240	70	74	11.9999
4ddd	chr2:176043788-176044078(-)$1	290	73	77	11.9999
ccc:	chr11:404731-404982(+)$1	251	188	192	11.9999
ddd]	chr12:57038862-57039096(-)$1	234	172	176	11.9999
EEEE	chr19:36145430-36145673(+)$1	243	29	33	11.9999
hhhh	chr3:195778848-195779112(-)$1	264	36	40	11.9999
::::	chr22:41641534-41641778(-)$1	244	96	100	11.9999
eeee	chr8:101734003-101734236(-)$1	233	185	189	11.9999
DDDD	chr20:60963413-60963656(+)$1	243	80	84	11.9999
pppp	chr19:8386736-8386953(+)$1	217	48	52	11.9999
333e	chr3:120320995-120321255(+)$1	260	206	210	11.9999
dddd	chr19:42364256-42364459(+)$1	203	69	73	11.9999
:EEE	chr1:203823039-203823285(+)$1	246	44	48	11.9999
d:::	chr11:824987-825292(+)$1	305	66	70	11.9999
JJJJ	chr1:879501-879747(-)$1	246	38	42	11.9999
dddd	chr12:56553942-56554204(+)$1	262	4	8	11.9999
mmhh	chr17:47490503-47490754(-)$1	251	46	50	11.9999
ddzz	chr3:128338719-128338963(-)$1	244	47	51	11.9999
6666	chr19:17972001-17972218(+)$1	217	72	76	11.9999
%%%c	chr4:100870762-100870997(-)$1	235	42	46	11.9999
%%%%	chr1:84967407-84967625(-)$1	218	63	67	11.9999
::GG	chr22:41368434-41368752(+)$1	318	287	291	11.9999
dd]f	chr19:38873960-38874212(+)$1	252	170	174	11.9999
{HHH	chr11:5290596-5290848(-)$1	252	61	65	11.9999
mmmd	chr6:49572888-49573177(-)$1	289	165	169	11.9999
JJJJ	chr17:61822877-61823136(-)$1	259	179	183	11.9999
cddd	chr11:18429178-18429428(+)$1	250	203	207	11.9999
bb[f	chr11:315058-315352(+)$1	294	75	79	11.9999
:ddd	chr15:52843290-52843555(-)$1	265	71	75	11.9999
eeee	chr16:28854086-28854362(-)$1	276	91	95	11.9999
C:::	chrX:153063683-153063891(+)$1	208	88	92	11.9999
AYYE	chr21:35275677-35275971(-)$1	294	267	271	11.9999
iiii	chr12:112460447-112460692(+)$1	245	80	84	11.9999
hhhh	chr1:245022537-245022777(-)$1	240	59	63	11.9999
GGGG	chr19:1258626-1258868(+)$1	242	15	19	11.9999
eeee	chr11:18428625-18428886(+)$1	261	67	71	11.9999
iiii	chr17:27076851-27077133(+)$1	282	9	13	11.9999
FFF:	chr22:36677282-36677531(-)$1	249	94	98	11.9999
meee	chr11:64084639-64084878(-)$1	239	151	155	11.9999
EEEE	chr21:46644312-46644592(+)$1	280	11	15	11.9999
eeem	chr3:101405414-101405657(-)$1	243	66	70	11.9999
////	chr11:5289644-5289857(-)$1	213	202	206	11.9999
llee	chr17:16343398-16343612(+)$1	214	174	178	11.9999
efff	chr16:31202716-31202973(+)$1	257	113	117	11.9999
bbll	chr14:102547807-102548024(-)$1	217	142	146	11.9999
::::	chr5:256476-256795(+)$1	319	247	251	11.9999
eee:	chr22:38075508-38075765(+)$1	257	111	115	11.9999

#DB
.((.	chr17:36916717-36916961(+)$1	1	16	20	11.9999
((((	chr17:56167543-56167797(+)$1	1	20	24	11.9999
))))	chr11:404638-404931(+)$1	1	281	285	11.9999
))).	chr19:11664184-11664525(-)$1	1	282	286	11.9999
((((	chr11:65739057-65739453(+)$1	1	327	331	11.9999
))..	chr19:55741458-55741724(-)$1	1	173	177	11.9999
.(((	chr3:133307563-133307789(+)$1	1	146	150	11.9999
))))	chr1:45480566-45480779(+)$1	1	95	99	11.9999
))..	chr19:11561610-11561862(+)$1	1	15	19	11.9999
))))	chr20:3018759-3019145(+)$1	1	53	57	11.9999
(((.	chr12:56437045-56437265(+)$1	1	95	99	11.9999
))))	chr16:1399228-1399528(-)$1	1	291	295	11.9999
.(((	chr7:44507410-44507624(+)$1	1	102	106	11.9999
((..	chr1:161071772-161071998(-)$1	1	18	22	11.9999
...(	chr6:71108957-71109196(+)$1	1	104	108	11.9999
))))	chr3:184052576-184052888(+)$1	1	53	57	11.9999
))).	chr12:6978434-6978655(+)$1	1	139	143	11.9999
....	chr17:49232995-49233241(+)$1	1	39	43	11.9999
)(((	chr11:62533936-62534193(+)$1	1	60	64	11.9999
((.(	chr3:128888926-128889151(-)$1	1	90	94	11.9999
(((.	chr7:155101156-155101409(+)$1	1	29	33	11.9999
((((	chr2:73479812-73480153(+)$1	1	228	232	11.9999
))))	chr7:99057635-99057893(-)$1	1	192	196	11.9999
((((	chr21:40547298-40547602(-)$1	1	4	8	11.9999
))))	chr3:128888951-128889204(-)$1	1	143	147	11.9999
....	chr11:46405160-46405429(+)$1	1	15	19	11.9999
))))	chr19:3052979-3053219(-)$1	1	34	38	11.9999
....	chr12:53692970-53693228(+)$1	1	1	5	11.9999
))).	chr2:85133038-85133278(+)$1	1	70	74	11.9999
.)))	chr2:176043788-176044078(-)$1	1	73	77	11.9999
))).	chr11:404731-404982(+)$1	1	188	192	11.9999
))).	chr12:57038862-57039096(-)$1	1	172	176	11.9999
((((	chr19:36145430-36145673(+)$1	1	29	33	11.9999
))))	chr3:195778848-195779112(-)$1	1	36	40	11.9999
....	chr22:41641534-41641778(-)$1	1	96	100	11.9999
))))	chr8:101734003-101734236(-)$1	1	185	189	11.9999
((((	chr20:60963413-60963656(+)$1	1	80	84	11.9999
....	chr19:8386736-8386953(+)$1	1	48	52	11.9999
...)	chr3:120320995-120321255(+)$1	1	206	210	11.9999
((((	chr19:42364256-42364459(+)$1	1	69	73	11.9999
.(((	chr1:203823039-203823285(+)$1	1	44	48	11.9999
)...	chr11:824987-825292(+)$1	1	66	70	11.9999
((((	chr1:879501-879747(-)$1	1	38	42	11.9999
((((	chr12:56553942-56554204(+)$1	1	4	8	11.9999
..))	chr17:47490503-47490754(-)$1	1	46	50	11.9999
((..	chr3:128338719-128338963(-)$1	1	47	51	11.9999
....	chr19:17972001-17972218(+)$1	1	72	76	11.9999
...(	chr4:100870762-100870997(-)$1	1	42	46	11.9999
....	chr1:84967407-84967625(-)$1	1	63	67	11.9999
..))	chr22:41368434-41368752(+)$1	1	287	291	11.9999
)).)	chr19:38873960-38874212(+)$1	1	170	174	11.9999
.(((	chr11:5290596-5290848(-)$1	1	61	65	11.9999
...)	chr6:49572888-49573177(-)$1	1	165	169	11.9999
))))	chr17:61822877-61823136(-)$1	1	179	183	11.9999
))))	chr11:18429178-18429428(+)$1	1	203	207	11.9999
((.(	chr11:315058-315352(+)$1	1	75	79	11.9999
.(((	chr15:52843290-52843555(-)$1	1	71	75	11.9999
((((	chr16:28854086-28854362(-)$1	1	91	95	11.9999
(...	chrX:153063683-153063891(+)$1	1	88	92	11.9999
)..)	chr21:35275677-35275971(-)$1	1	267	271	11.9999
((((	chr12:112460447-112460692(+)$1	1	80	84	11.9999
))))	chr1:245022537-245022777(-)$1	1	59	63	11.9999
((((	chr19:1258626-1258868(+)$1	1	15	19	11.9999
))))	chr11:18428625-18428886(+)$1	1	67	71	11.9999
((((	chr17:27076851-27077133(+)$1	1	9	13	11.9999
(((.	chr22:36677282-36677531(-)$1	1	94	98	11.9999
.)))	chr11:64084639-64084878(-)$1	1	151	155	11.9999
((((	chr21:46644312-46644592(+)$1	1	11	15	11.9999
(((.	chr3:101405414-101405657(-)$1	1	66	70	11.9999
....	chr11:5289644-5289857(-)$1	1	202	206	11.9999
..))	chr17:16343398-16343612(+)$1	1	174	178	11.9999
)(((	chr16:31202716-31202973(+)$1	1	113	117	11.9999
((..	chr14:102547807-102548024(-)$1	1	142	146	11.9999
....	chr5:256476-256795(+)$1	1	247	251	11.9999
))).	chr22:38075508-38075765(+)$1	1	111	115	11.9999

#PSSM
C : 0.97	c : 0.02	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
U : 0.98	u : 0.01	

#score	899.9999999999995
#seq	75
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_transcript_m3_run1.nuc.txt

#NT
gaggaggaggaagagggugaaggagaggaagaggaggaggaaggggaggaggaggaggaggaagggggggaaggagaggaauugggggaggaagaggagguggaggaggaggGUGAUGUUGAUAGUGAUGAAGAAGAGGAGGAAGAUGAGGAGAGCUCCUCGGAGGGCUUGGAGGCUGAGGACUGGGCCCAGGGAGUAGUGGAGGCCGGUGGCAGCUUCGGGGCUUAUGGUGCCCAGGAGGAAGCCCAGUGCCCUACUCUGCAUUUCCUGGAAGGUGGGGAGGACUCUGAUUCAGACAGUGAGGAAGAGgacgau	chr20:3765569-3765903(-)$1	334	15	330	425.0000

#otherMatches

#Struct PSSM
hhhhhh88888888bb]dddd]bb333eeeee]eeeee22dddd:::::FFFFFFCCCKKDDDD{FFFFFF{BBKKAKKBBEEEEE{BB{DDDDMMMMDDDDLLLCCCKKDDDDKKCCCa!!bboooooobb22a::::::ccc!!a!!a!!ccc"""dddd!!cccmmmmccc22dddd333ccc22a22a22ccc::::CCCYYDDDDYYCCCZZZDDDDZZZDDDDBBEEEEEYYBBZZZAYYBB}FFFFFFYYDDDDYYCCC:eeeeemmmmeeeeedddd[cccooooooccc]dddd::FFFFFF}FFF	chr6:31922231-31922653(-)$1	422	84	399	425.0000
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::HHHHHHHHKKDDDD{EEEEEKKBB:::::::::::::::::ffffffwwwwwwwwwwwwwwffffff:::ffffff[ggggggg"""eeeee[acccqqqqqqqqccc]a]eeeee22ggggggg]ffffff::ccc!!bbmmmmbb22cccBBYYEEEEE}DDDD}HHHHHHHH::::::::::::a!!dddd!!ddddnnnnndddd22dddd22a:::	chr20:3765569-3765903(-)$1	334	15	330	425.0000

#DB
))))))........)).)))).))...))))).)))))..)))).....(((((((((..((((.((((((.((..(..(((((((.((.((((....((((...(((..((((..((((..((......))..)......(((..(..(..(((...((((..(((....)))..))))...)))..)..)..)))....)))..))))..)))...))))...)))))))))))..))...)..)).))))))..))))..))).(((((....)))))((((.(((......))).))))..)))))).)))	chr6:31922231-31922653(-)$1	1	84	399	425.0000
..............................................................................................((((((((..((((.(((((..((.................((((((..............))))))...((((((.(((((((...(((((.((((........))).).)))))..))))))).))))))..(((..((....))..)))))..))))).)))).))))))))............(..((((..((((.....))))..))))..)...	chr20:3765569-3765903(-)$1	1	15	330	425.0000

#PSSM
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
A : 0.50	a : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
A : 0.50	a : 0.50	
C : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
A : 0.50	a : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
C : 0.50	a : 0.50	
C : 0.50	a : 0.50	
U : 0.50	g : 0.50	
C : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
U : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	a : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	a : 0.50	
U : 0.50	a : 0.50	
g : 1.00	
a : 0.50	g : 0.50	
g : 0.50	a : 0.50	
a : 0.50	g : 0.50	
g : 0.50	a : 0.50	
g : 1.00	
a : 0.50	g : 0.50	
a : 1.00	
c : 0.50	a : 0.50	
c : 0.50	u : 0.50	
g : 0.50	u : 0.50	
g : 1.00	
g : 1.00	
a : 0.50	g : 0.50	
c : 0.50	g : 0.50	
a : 0.50	g : 0.50	
g : 0.50	a : 0.50	
a : 0.50	g : 0.50	
g : 1.00	
a : 1.00	
c : 0.50	a : 0.50	
c : 0.50	g : 0.50	
g : 0.50	a : 0.50	
a : 0.50	g : 0.50	
g : 1.00	
a : 1.00	
u : 0.50	g : 0.50	
c : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
c : 0.50	g : 0.50	
g : 0.50	a : 0.50	
g : 1.00	
g : 1.00	
a : 1.00	
u : 0.50	g : 0.50	
c : 0.50	g : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
u : 0.50	U : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
c : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
c : 0.50	A : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
c : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
u : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
a : 0.50	C : 0.50	
u : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
u : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	U : 0.50	
a : 0.50	U : 0.50	
u : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
a : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
c : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
u : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
u : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
c : 0.50	C : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	U : 0.50	
a : 0.50	U : 0.50	
c : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
A : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	u : 0.50	

#score	850.0
#seq	2
#width	315
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_transcript_m1_run2.nuc.txt

#NT
ccgccgcccgcgccgc	chr11:2398561-2398877(+)$1	316	201	217	28.2727
CCGCCUCCUGCGCCGC	chr16:30077030-30077350(+)$1	320	52	68	24.4545
ccgccgccgccgccgc	chr19:6424621-6424892(-)$1	271	117	133	36.2727
ccgccgccgccacccu	chr16:58231517-58231871(-)$1	354	181	197	28.5454
CCUCCGCCGCCGCCGC	chr6:53213554-53213819(-)$1	265	147	163	32.4545
CUGCCCCUGCCACCGC	chr2:97541639-97542011(-)$1	372	127	143	24.0909
cggccgcugccgccgc	chr16:29818320-29818640(+)$1	320	84	100	27.9090
ccaccgcccccacccc	chr6:34212678-34212944(+)$1	266	53	69	24.5454
ccaccgcccccacccc	chr6:34212609-34212864(+)$1	255	122	138	24.5454
gcgccgccgccccggg	chr16:88870214-88870492(+)$1	278	57	73	24.7272
ccgccgccgccgccgc	chr20:57466603-57466870(+)$1	267	158	174	36.2727
ccgccggcgccccggg	chr2:55276878-55277193(-)$1	315	15	31	23.5454
CCGCCCCUGCCGCCGG	chr2:55277114-55277355(-)$1	241	127	143	25.4545
ccgccgccgccaccgc	chr12:6875608-6875935(+)$1	327	148	164	36.1818
CCCCCGCCGCCAUCGA	chr7:75931979-75932258(+)$1	279	225	241	24.2727
gcgccgccgccccggg	chr16:88870116-88870414(+)$1	298	155	171	24.7272
cagccgccgccaccgc	chr1:35658199-35658561(-)$1	362	202	218	32.1818
ccgccaccgccgccgc	chr7:6523601-6523898(-)$1	297	190	206	32.6363
CCGCCGCCUCCGCCGC	chr11:809924-810140(+)$1	216	87	103	32.4545
cagccgcagccacagc	chr6:37137955-37138229(+)$1	274	254	270	23.6363
ccuccgccgccgccgc	chr2:70314566-70314898(+)$1	332	124	140	32.4545
GCGCCGCGGCCCCCGC	chr20:62152052-62152310(+)$1	258	19	35	27.4545
ccgcccccgccUCCUG	chr11:2160295-2160563(-)$1	268	1	17	23.7272
UCGCCGCCGCCACCAU	chr1:26798903-26799202(+)$1	299	186	202	24.3636
cagccgcagccacagc	chr6:37138029-37138340(+)$1	311	180	196	23.6363
ccgccgccgccgccgc	chr11:61734777-61735183(-)$1	406	252	268	36.2727
ccgccgccgccaccgc	chr1:32403543-32403846(-)$1	303	145	161	36.1818
ccgccgccgccgccgc	chr20:57466518-57466792(+)$1	274	243	259	36.2727
ccgccgcccgcaccgc	chr17:80055905-80056199(-)$1	294	169	185	28.1818
ccgccgccgccgccgc	chrX:152953601-152953886(+)$1	285	125	141	36.2727
GCGGCGCCGCCACCGC	chr1:156721115-156721397(-)$1	282	93	109	28.2727
GCGCCACCGCCGCCGC	chr10:17271244-17271509(+)$1	265	135	151	29.3636
CCUCCUCCGCCGCCGG	chr17:49243664-49243956(+)$1	292	103	119	25.7272
ccgcugccgccaccgc	chr20:49547417-49547704(-)$1	287	240	256	31.4545
ccgccgccgccaccgc	chrX:152953477-152953693(+)$1	216	16	32	36.1818
CCGCCGCCUCCGCCGC	chr11:809866-810124(+)$1	258	145	161	32.4545
acgccgccgccaccgc	chr6:37787506-37787819(+)$1	313	127	143	32.3636
cagccgccgccaccgc	chr1:35658087-35658361(-)$1	274	2	18	32.1818
CCGCCGCCCCUACCGC	chr22:21272027-21272359(+)$1	332	156	172	27.6363
GCGCCACCGCCGCCGC	chr10:17271178-17271433(+)$1	255	201	217	29.3636
CCGCCGUCGUCGCCGC	chr19:3985275-3985512(-)$1	237	56	72	27.4545
GCGGCGCCGCCACCGC	chr1:156721254-156721539(-)$1	285	235	251	28.2727
gcgccggcgcccccgc	chr16:29818267-29818520(+)$1	253	34	50	27.3636
CCGCCGCCUCCGCCCG	chr1:35657975-35658214(-)$1	239	113	129	25.4545
CCCCCGCCGCCAUCGA	chr7:75932086-75932314(+)$1	228	118	134	24.2727
ccgcagccgccuccgc	chr2:232573166-232573418(+)$1	252	128	144	29.8181
cgcccgccgcccccgg	chr16:88870315-88870551(+)$1	236	81	97	24.2727
acgccgccgccaccgc	chr12:120972416-120972682(+)$1	266	217	233	32.3636
ccgccgccgccccggc	chr19:1241671-1242017(+)$1	346	251	267	31.0000
CCGCCGUCGUCGCCGC	chr19:3985312-3985559(-)$1	247	103	119	27.4545
ccgcccccgccUCCUG	chr11:2160379-2160642(-)$1	263	80	96	23.7272
cccccgccgcccccgc	chr11:64001965-64002310(+)$1	345	76	92	31.4545
CCGCCACCGCCGCCGC	chr17:39845042-39845364(+)$1	322	187	203	32.6363
ccgccgccgccgccgc	chrX:152953540-152953801(+)$1	261	186	202	36.2727

#otherMatches

#Struct PSSM
fffffeeeeepppppp	chr9:100745555-100745887(+)$1	332	227	243	27.7272
::ccc!!dddd[bboo	chr11:2398561-2398877(+)$1	316	201	217	28.2727
::FFFFFF::ddddhh	chr16:30077030-30077350(+)$1	320	52	68	24.4545
eeee::IIIIIIIII}	chr19:6424621-6424892(-)$1	271	117	133	36.2727
22ggggggg:::::::	chr16:58231517-58231871(-)$1	354	181	197	28.5454
DDLLLBB{BB{BB{EE	chr6:53213554-53213819(-)$1	265	147	163	32.4545
dddccc[ccc++++++	chr2:97541639-97542011(-)$1	372	127	143	24.0909
!hhhhhhhhffffff!	chr16:29818320-29818640(+)$1	320	84	100	27.9090
eee:::::::::::DD	chr6:34212678-34212944(+)$1	266	53	69	24.5454
eee::DDDDZZZBB}E	chr6:34212609-34212864(+)$1	255	122	138	24.5454
FFFFF{ADDDD{Addd	chr16:88870214-88870492(+)$1	278	57	73	24.7272
lccc]dddd22bba[b	chr20:57466603-57466870(+)$1	267	158	174	36.2727
bbCCC{BBKKHHHHHH	chr2:55276878-55277193(-)$1	315	15	31	23.5454
a]bbEEEEE{HHHHHH	chr2:55277114-55277355(-)$1	241	127	143	25.4545
eeee[dddd!!cccoo	chr12:6875608-6875935(+)$1	327	148	164	36.1818
55555ffffff:::::	chr7:75931979-75932258(+)$1	279	225	241	24.2727
ccc[ccc$$$$$dddd	chr16:88870116-88870414(+)$1	298	155	171	24.7272
[bbbbbb[bbmmmmbb	chr1:35658199-35658561(-)$1	362	202	218	32.1818
::::::::FFFFFFdd	chr7:6523601-6523898(-)$1	297	190	206	32.6363
:::DDDD{CCC{DDDD	chr11:809924-810140(+)$1	216	87	103	32.4545
DD}DDDD}CCC}A}BB	chr6:37137955-37138229(+)$1	274	254	270	23.6363
77777bb4444a]ccc	chr2:70314566-70314898(+)$1	332	124	140	32.4545
IIIIIIIIbb[eeeee	chr20:62152052-62152310(+)$1	258	19	35	27.4545
DDDA::::cccmmmmc	chr11:2160295-2160563(-)$1	268	1	17	23.7272
dddd[eeeee[cccww	chr1:26798903-26799202(+)$1	299	186	202	24.3636
iiii:bb[bbmmmmbb	chr6:37138029-37138340(+)$1	311	180	196	23.6363
mmbb]bb::::bb[ee	chr11:61734777-61735183(-)$1	406	252	268	36.2727
HHHHHHH}CCC}EEEE	chr1:32403543-32403846(-)$1	303	145	161	36.1818
""bbmmmmbb]a]ccc	chr20:57466518-57466792(+)$1	274	243	259	36.2727
dddd[ffffff[bb[a	chr17:80055905-80056199(-)$1	294	169	185	28.1818
ccdddd!!bb[bbmmm	chrX:152953601-152953886(+)$1	285	125	141	36.2727
ffffffpppppppfff	chr1:156721115-156721397(-)$1	282	93	109	28.2727
dddd::::GGGGGGG:	chr10:17271244-17271509(+)$1	265	135	151	29.3636
iii"""eeeeeeeeee	chr17:49243664-49243956(+)$1	292	103	119	25.7272
::BB}BB}AYYDDDD:	chr20:49547417-49547704(-)$1	287	240	256	31.4545
b[bb[bb[bbmmmmbb	chrX:152953477-152953693(+)$1	216	16	32	36.1818
:::DDDD{CCC{DDDD	chr11:809866-810124(+)$1	258	145	161	32.4545
B{EEEEE:ccc[dddd	chr6:37787506-37787819(+)$1	313	127	143	32.3636
FFFF:bb[bbmmmmbb	chr1:35658087-35658361(-)$1	274	2	18	32.1818
b[bb[aooooooa]bb	chr22:21272027-21272359(+)$1	332	156	172	27.6363
ccDDDDBB}A}EEEEE	chr10:17271178-17271433(+)$1	255	201	217	29.3636
qccc]a]eeeee]ccc	chr19:3985275-3985512(-)$1	237	56	72	27.4545
ffffffeeeee]ahhh	chr1:156721254-156721539(-)$1	285	235	251	28.2727
eeeeeddddmmmmddd	chr16:29818267-29818520(+)$1	253	34	50	27.3636
nnnnnggggggg]bbE	chr1:35657975-35658214(-)$1	239	113	129	25.4545
333eeeeeeeeeeEEE	chr7:75932086-75932314(+)$1	228	118	134	24.2727
DDbb[dddd!!eeeee	chr2:232573166-232573418(+)$1	252	128	144	29.8181
bb]a]eeeeedddd!!	chr16:88870315-88870551(+)$1	236	81	97	24.2727
[bb!!bbpppppppbb	chr12:120972416-120972682(+)$1	266	217	233	32.3636
e[bb[ddddllldddd	chr19:1241671-1242017(+)$1	346	251	267	31.0000
::bb[dddd[eeeeep	chr19:3985312-3985559(-)$1	247	103	119	27.4545
eee333ccc333bb]d	chr11:2160379-2160642(-)$1	263	80	96	23.7272
::::CCCCCCHHHHHH	chr11:64001965-64002310(+)$1	345	76	92	31.4545
DD:BB{DDDD{CCC{F	chr17:39845042-39845364(+)$1	322	187	203	32.6363
CCZZZCCCYYDDDD}B	chrX:152953540-152953801(+)$1	261	186	202	36.2727

#DB
((((((((((......	chr9:100745555-100745887(+)$1	1	227	243	27.7272
..(((..((((.((..	chr11:2398561-2398877(+)$1	1	201	217	28.2727
..((((((..((((((	chr16:30077030-30077350(+)$1	1	52	68	24.4545
))))..))))))))).	chr19:6424621-6424892(-)$1	1	117	133	36.2727
..))))))).......	chr16:58231517-58231871(-)$1	1	181	197	28.5454
((...((.((.((.((	chr6:53213554-53213819(-)$1	1	147	163	32.4545
((((((.(((......	chr2:97541639-97542011(-)$1	1	127	143	24.0909
.((((((((((((((.	chr16:29818320-29818640(+)$1	1	84	100	27.9090
)))...........((	chr6:34212678-34212944(+)$1	1	53	69	24.5454
)))..))))...)).)	chr6:34212609-34212864(+)$1	1	122	138	24.5454
(((((.(((((.((((	chr16:88870214-88870492(+)$1	1	57	73	24.7272
.))).))))..))(.(	chr20:57466603-57466870(+)$1	1	158	174	36.2727
))(((.((..((((((	chr2:55276878-55277193(-)$1	1	15	31	23.5454
).))(((((.((((((	chr2:55277114-55277355(-)$1	1	127	143	25.4545
((((.((((..(((..	chr12:6875608-6875935(+)$1	1	148	164	36.1818
.....)))))).....	chr7:75931979-75932258(+)$1	1	225	241	24.2727
(((.(((.....((((	chr16:88870116-88870414(+)$1	1	155	171	24.7272
.((((((.((....))	chr1:35658199-35658561(-)$1	1	202	218	32.1818
........((((((((	chr7:6523601-6523898(-)$1	1	190	206	32.6363
...((((.(((.((((	chr11:809924-810140(+)$1	1	87	103	32.4545
)).)))).))).).))	chr6:37137955-37138229(+)$1	1	254	270	23.6363
.....))....).)))	chr2:70314566-70314898(+)$1	1	124	140	32.4545
((((((((((.(((((	chr20:62152052-62152310(+)$1	1	19	35	27.4545
((((....(((....)	chr11:2160295-2160563(-)$1	1	1	17	23.7272
((((.(((((.(((..	chr1:26798903-26799202(+)$1	1	186	202	24.3636
)))).((.((....))	chr6:37138029-37138340(+)$1	1	180	196	23.6363
..)).))....((.((	chr11:61734777-61735183(-)$1	1	252	268	36.2727
))))))).))).))))	chr1:32403543-32403846(-)$1	1	145	161	36.1818
..((....)).).)))	chr20:57466518-57466792(+)$1	1	243	259	36.2727
((((.((((((.((.(	chr17:80055905-80056199(-)$1	1	169	185	28.1818
((((((..((.((...	chrX:152953601-152953886(+)$1	1	125	141	36.2727
((((((.......)))	chr1:156721115-156721397(-)$1	1	93	109	28.2727
))))....(((((((.	chr10:17271244-17271509(+)$1	1	135	151	29.3636
(((...((((((((((	chr17:49243664-49243956(+)$1	1	103	119	25.7272
..)).)).)..)))).	chr20:49547417-49547704(-)$1	1	240	256	31.4545
(.((.((.((....))	chrX:152953477-152953693(+)$1	1	16	32	36.1818
...((((.(((.((((	chr11:809866-810124(+)$1	1	145	161	32.4545
(.(((((.(((.((((	chr6:37787506-37787819(+)$1	1	127	143	32.3636
((((.((.((....))	chr1:35658087-35658361(-)$1	1	2	18	32.1818
(.((.(......).))	chr22:21272027-21272359(+)$1	1	156	172	27.6363
)))))))).).)))))	chr10:17271178-17271433(+)$1	1	201	217	29.3636
.))).).))))).)))	chr19:3985275-3985512(-)$1	1	56	72	27.4545
))))))))))).))))	chr1:156721254-156721539(-)$1	1	235	251	28.2727
)))))((((....)))	chr16:29818267-29818520(+)$1	1	34	50	27.3636
.....))))))).)))	chr1:35657975-35658214(-)$1	1	113	129	25.4545
...))))))))))(((	chr7:75932086-75932314(+)$1	1	118	134	24.2727
((((.((((..(((((	chr2:232573166-232573418(+)$1	1	128	144	29.8181
)).).)))))((((..	chr16:88870315-88870551(+)$1	1	81	97	24.2727
.((..((.......))	chr12:120972416-120972682(+)$1	1	217	233	32.3636
(.((.((((...))))	chr19:1241671-1242017(+)$1	1	251	267	31.0000
..((.((((.(((((.	chr19:3985312-3985559(-)$1	1	103	119	27.4545
)))...)))...)).)	chr11:2160379-2160642(-)$1	1	80	96	23.7272
....))))))))))))	chr11:64001965-64002310(+)$1	1	76	92	31.4545
)).((.((((.(((.(	chr17:39845042-39845364(+)$1	1	187	203	32.6363
))...)))..)))).)	chrX:152953540-152953801(+)$1	1	186	202	36.2727

#PSSM
c : 0.52	C : 0.27	G : 0.09	g : 0.05	a : 0.03	U : 0.01	
c : 0.50	C : 0.36	a : 0.07	g : 0.03	U : 0.01	
g : 0.52	G : 0.29	C : 0.05	U : 0.03	a : 0.03	c : 0.03	u : 0.01	
c : 0.61	C : 0.34	G : 0.03	
c : 0.58	C : 0.38	u : 0.01	a : 0.01	
g : 0.56	G : 0.23	U : 0.05	A : 0.05	C : 0.03	c : 0.03	a : 0.01	
c : 0.58	C : 0.34	g : 0.03	U : 0.03	
c : 0.56	C : 0.32	U : 0.03	a : 0.03	u : 0.01	G : 0.01	
g : 0.54	G : 0.29	c : 0.07	U : 0.07	C : 0.01	
c : 0.58	C : 0.32	g : 0.03	U : 0.03	G : 0.01	
c : 0.61	C : 0.36	U : 0.01	
a : 0.25	G : 0.21	g : 0.18	A : 0.12	c : 0.12	C : 0.03	U : 0.03	u : 0.01	
c : 0.58	C : 0.38	U : 0.03	
c : 0.47	C : 0.41	g : 0.07	a : 0.03	
g : 0.52	G : 0.34	c : 0.05	U : 0.03	A : 0.01	C : 0.01	
c : 0.49	C : 0.27	G : 0.09	g : 0.07	A : 0.03	u : 0.01	U : 0.01	

#score	1606.5454545454545
#seq	55
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF305BNZ_LARP7_transcript_m3_run1.nuc.txt

#NT
guugauauggcuggcuagguggguguccccuuccugccucaccacuccauguacaucccuccugaagcug	chrX:144138684-144138951(+)$1	267	3	73	157.3076
gcugaucuggcuggcuaggcggguguccccuuccucccucaccguuccaugugcgucccucccgaagcug	chr13:99858018-99858245(+)$1	227	3	73	179.0384
gcugaucuggcuggcuaggcggguguccccuuccucccucaacccuccacaugugucccucccaaagcug	chr5:175055150-175055388(+)$1	238	100	170	165.9615
gcuuaucuggcuggcuaggcagcugucggcuuccuccuucaccauuccaggugugucccuccggaaguug	chr9:25089000-25089250(-)$1	250	161	231	141.7307
gcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcug	chr2:76672284-76672489(-)$1	205	13	83	183.2692
gcugaucuagcuggcuaggcggguguccccuuccucccucaccacuccaugugcgucccuccagaagcug	chr18:586649-586883(-)$1	234	97	167	176.1538
gcugaucuggcuggcuagguggguguccacuuccucccucaucgcuccaugcgcaucccuuccaaagcug	chr6:76364860-76365114(-)$1	254	159	229	159.4230
gcugaucuggcuggcuagauguguguccccuuccucccucacugcuccaggugugucccucccgaagcug	chr22:37451128-37451332(-)$1	204	5	75	163.8461
gcugaucuggaugucuaggcggguguccccuuccucccucaccacuccaugugcaucccucucgaagugc	chr2:207086019-207086242(+)$1	223	79	149	156.7307
gcugaucuggaugucuaggcggguguccccuuccucccucaccacuccaugugcaucccucucgaagugc	chr2:207086010-207086219(+)$1	209	88	158	156.7307
gcugaucuggcuggcuagguggguguccccuuccuaccucaccgcuccaugugcgucccucccgaagcug	chr16:81995583-81995839(+)$1	256	7	77	176.7307
gcugaucuagcuggcuaggcggguguccccuuccucccucaccacuccaugugcgucccuccagaagcug	chr18:586683-586894(-)$1	211	108	178	176.1538
gcugaucuggcuggcuaggcagguguccccuuccucccucaccacuccaugugcaucccucccaaagcug	chr9:77414736-77414943(+)$1	207	134	204	174.8076
gcugaucuggcuggcuagguggguauccucuuccucccucauugcuccaugugcaucccuccggaagcug	chr20:18275956-18276187(-)$1	231	152	222	159.0384
gcuaaccuggcuggcuaggcggguguuccuuuccucccucaccacuccaugugugucccuuccaaaacug	chr13:98856120-98856377(-)$1	257	19	89	152.1153
gcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcug	chr14:90178905-90179108(+)$1	203	9	79	183.2692
gcugaucuagcuggcuaggcggguguccccuuccucccucaccacuccaugugcgucccuccagaagcug	chr18:586710-586926(-)$1	216	140	210	176.1538
gcugaucuggcuggcuagauguguguccccuuccucccucacugcuccaggugugucccucccgaagcug	chr22:37451104-37451328(-)$1	224	1	71	163.8461
gcugauccgguuggcugggcagguguccccucccuuccuuaccgcuccucgugcgucccucccgaagcug	chr5:124686671-124686924(-)$1	253	160	230	145.7692
gcugaucuggcuggcuaggcgggugucccuuuccucccucaccgcuccaugugcgucccucccgaagcug	chr17:70659965-70660234(-)$1	269	3	73	179.0384
gcugaucuggcuggcuaggcggguguccccuuccucccucaacccuccacaugugucccucccaaagcug	chr5:175055188-175055393(+)$1	205	62	132	165.9615
ggcuaucuggcuggcuaggcggguguccccuuccucccucacuacuccacgugugucccucccgaagaug	chr6:132141377-132141672(+)$1	295	155	225	158.4615
gcugaucuagcuggcuaggcggcugucuccuuccccccucaccgcuccaugugcgucccucccgaaagcu	chr2:158155403-158155668(-)$1	265	58	128	150.3846
ggcgaucuggcugacuaggcggguguccccuuccucccucaccacuccacguacaucccucccaaagcug	chr7:154973557-154973794(+)$1	237	91	161	159.0384
gcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcug	chr2:76672282-76672484(-)$1	202	8	78	183.2692

#otherMatches

#Struct PSSM
eee333eeeee:ccc[ccc[cccnnnnnccc]ccc]ccc:::cccpppppppccc::DDDDBBYYBB:::	chr2:47586788-47587009(-)$1	221	149	219	161.9230
b[bbffffff[ccc!!gggggggrrrrrrrrrggggggg22ccc22ffffff]bb]bb:::ffffffccc	chrX:144138684-144138951(+)$1	267	3	73	157.3076
eeennnnneeeeeDDDDNNNNNDDDD{DDDDeeeee!!bbdddd"""eeeeebb[bboooooobb]bb]e	chr13:99858018-99858245(+)$1	227	3	73	179.0384
fffnnnnnffffff333ccccccmmmmccc:::DDDD}BB~~~~DDDDZZZGGGGGGGeeeee"""dddd	chr5:175055150-175055388(+)$1	238	100	170	165.9615
ddd[bb!!eeeeeooooooeeeeebb]ddddbb22ddddddddoooooodddd:ffffffffffffoooo	chr9:25089000-25089250(-)$1	250	161	231	141.7307
EKKA{FFFFFF{BBKKBBDDDDDDDD{EEEEE:ddddbb"""bb####ccc!!eeeeebbadddd[bbnn	chr2:76672284-76672489(-)$1	205	13	83	183.2692
====ppppppp===========EEEEEABB?????FFFFFFBBDDDDZZZCCC}CCC}CCC:::::::ii	chr18:586649-586883(-)$1	234	97	167	176.1538
cc]ddddccc]dddd]eeeee]ccc]ccc22bb22gggggggcccnnnnnccc:GGGGGGGFFFFFFBB}	chr6:76364860-76365114(-)$1	254	159	229	159.4230
EEE:ffffffmmmmffffffBB{BB{GGGGGGG{BB:eeeee[ccc[a[bb[annnnna]bb]a]ccc]e	chr22:37451128-37451332(-)$1	204	5	75	163.8461
eee333dddd22ccc333a]eeeee::::::eeeee!!ffffff$$$$$ggggggg!!ammmma22gggg	chr2:207086019-207086242(+)$1	223	79	149	156.7307
eee333dddd22ccc333a]eeeee::::::eeeee!!ffffff$$$$$ggggggg!!ammmma22gggg	chr2:207086010-207086219(+)$1	209	88	158	156.7307
DD{EEEEEDDDDbb!!gggggggrrrrrrrrrggggggg22bbccc[a[dddd"""dddd[ffffffccc	chr16:81995583-81995839(+)$1	256	7	77	176.7307
E}FFFFFFYYBB}BB}HHHHHHHHCCCKKEEEEE{BB:::bbcccnnnnnccc]bb::::::::ddddnn	chr18:586683-586894(-)$1	211	108	178	176.1538
eee333eeeeeccc333==========abb333a]ggggggg333ccc::eeeee"""bbnnnnnbb]ee	chr9:77414736-77414943(+)$1	207	134	204	174.8076
fffnnnnnffffff::EEEEE}FFFFFFZZZBBYYGGGGGGGZZZGGGGGGGbb[cccmmmmccc]bb::	chr20:18275956-18276187(-)$1	231	152	222	159.0384
wwwwwffffffccc!!ccc[cccrrrrrrrrrccc]ccc22ccc:::CCC{EEEEE{GGGGGGG{DDDD:	chr13:98856120-98856377(-)$1	257	19	89	152.1153
EKKA{FFFFFFCCCLLLDDDDddddwwwwwwwwwwwwwwddddccc[a[dddd"""dddd[ffffffccc	chr14:90178905-90179108(+)$1	203	9	79	183.2692
====ppppppp===========EEEEEABB?????FFFFFFBBDDDDZZZCCC}CCC}CCC?????DDDD	chr18:586710-586926(-)$1	216	140	210	176.1538
dddnnnnnddddCCC{CCC:BB{BB{GGGGGGG{BB:eeeee[ccc[a[bb[annnnna]bb]a]ccc]e	chr22:37451104-37451328(-)$1	224	1	71	163.8461
ff]dddddddd[bb!!ccc[cccnnnnncccccc22bb22ddddCCCCCC}CCCCCCdddd####cccnn	chr5:124686671-124686924(-)$1	253	160	230	145.7692
BKKA{FFFFFF{BBKKBBDDDDDDDDEEEEE{BB::dddd!!bb!!ccc[eeeee"""bbnnnnnbb333	chr17:70659965-70660234(-)$1	269	3	73	179.0384
fffnnnnnffffff333ccccccmmmmccc:::DDDD}BB::::::::::::::ccceeeee####dddd	chr5:175055188-175055393(+)$1	205	62	132	165.9615
dddd22eeeee:bb!!ccc[bbmmmmbbccc]bb:GGGGGGGYYDDDD:ffffff[dddd[hhhhhhhh!	chr6:132141377-132141672(+)$1	295	155	225	158.4615
ffff[eeeeemmmmeeeeeffffff22bb333ccc:dddd[dddd$$$$$ffffff!!bboooooobb22	chr2:158155403-158155668(-)$1	265	58	128	150.3846
eeeooooooeeeee]eeeeeHHHHHHHHYYFFFFFF:::::::::::::dddd"""dddd[bb[cccccc	chr7:154973557-154973794(+)$1	237	91	161	159.0384
EKKA{FFFFFF{BBKKBBDDDDDDDD{EEEEE:ddddbb"""bb####ccc!!eeeeebbadddd[bbnn	chr2:76672282-76672484(-)$1	202	8	78	183.2692

#DB
)))...))))).(((.(((.(((.....))).))).)))...(((.......)))..))))))..))...	chr2:47586788-47587009(-)$1	1	149	219	161.9230
(.((((((((.(((..(((((((.........)))))))..)))..)))))).)).))...(((((((((	chrX:144138684-144138951(+)$1	1	3	73	157.3076
(((.....)))))((((.....((((.(((((((((..((((((...(((((((.((......)).)).)	chr13:99858018-99858245(+)$1	1	3	73	179.0384
(((.....))))))...)))(((....)))...)))).))....))))...)))))))(((((...((((	chr5:175055150-175055388(+)$1	1	100	170	165.9615
(((.((..(((((......))))))).))))))..))))((((......)))).((((((((((((....	chr9:25089000-25089250(-)$1	1	161	231	141.7307
(..(.((((((.((..((((((((((.(((((.((((((...((....(((..((((((((((((.((..	chr2:76672284-76672489(-)$1	1	13	83	183.2692
((((.......))))))))))))))))))).....))))))))))))...))).))).))).......((	chr18:586649-586883(-)$1	1	97	167	176.1538
)).))))))).)))).))))).))).)))..))..)))))))(((.....))).))))))))))))))).	chr6:76364860-76365114(-)$1	1	159	229	159.4230
(((.((((((....))))))((.((.(((((((.((.(((((.(((.(.((.(.....).)).).))).)	chr22:37451128-37451332(-)$1	1	5	75	163.8461
)))...))))..)))...).)))))......(((((..((((((.....(((((((..(....)..))))	chr2:207086019-207086242(+)$1	1	79	149	156.7307
)))...))))..)))...).)))))......(((((..((((((.....(((((((..(....)..))))	chr2:207086010-207086219(+)$1	1	88	158	156.7307
((.(((((((((((..(((((((.........)))))))..))(((.(.((((...((((.(((((((((	chr16:81995583-81995839(+)$1	1	7	77	176.7307
).))))))..)).)).))))))))(((..(((((.((...(((((.....))).))........((((..	chr18:586683-586894(-)$1	1	108	178	176.1538
)))...))))))))...)))))))))))))...).)))))))...)))..(((((...((.....)).))	chr9:77414736-77414943(+)$1	1	134	204	174.8076
(((.....))))))..))))).))))))...))..)))))))...)))))))((.(((....))).))..	chr20:18275956-18276187(-)$1	1	152	222	159.0384
.....))))))(((..(((.(((.........))).)))..)))...(((.(((((.(((((((.((((.	chr13:98856120-98856377(-)$1	1	19	89	152.1153
(..(.(((((((((...((((((((..............))))(((.(.((((...((((.(((((((((	chr14:90178905-90179108(+)$1	1	9	79	183.2692
((((.......))))))))))))))))))).....))))))))))))...))).))).))).....))))	chr18:586710-586926(-)$1	1	140	210	176.1538
(((.....))))(((.(((.((.((.(((((((.((.(((((.(((.(.((.(.....).)).).))).)	chr22:37451104-37451328(-)$1	1	1	71	163.8461
)).))))((((.((..(((.(((.....))))))..))..)))))))))).))))))((((....(((..	chr5:124686671-124686924(-)$1	1	160	230	145.7692
(..(.((((((.((..(((((((((((((((.((..((((..((..(((.(((((...((.....))...	chr17:70659965-70660234(-)$1	1	3	73	179.0384
(((.....))))))...)))(((....)))...)))).))..............((((((((....((((	chr5:175055188-175055393(+)$1	1	62	132	165.9615
))))..))))).((..(((.((....))))).)).)))))))..)))).((((((.((((.((((((((.	chr6:132141377-132141672(+)$1	1	155	225	158.4615
((((.(((((....)))))))))))..))...))).((((.((((.....((((((..((......))..	chr2:158155403-158155668(-)$1	1	58	128	150.3846
(((......))))).)))))))))))))..)))))).............((((...((((.((.((((((	chr7:154973557-154973794(+)$1	1	91	161	159.0384
(..(.((((((.((..((((((((((.(((((.((((((...((....(((..((((((((((((.((..	chr2:76672282-76672484(-)$1	1	8	78	183.2692

#PSSM
g : 0.99	
c : 0.88	g : 0.07	u : 0.03	
u : 0.92	c : 0.07	
g : 0.88	u : 0.07	a : 0.03	
a : 0.99	
u : 0.96	c : 0.03	
c : 0.96	a : 0.03	
u : 0.96	c : 0.03	
g : 0.84	a : 0.15	
g : 0.99	
c : 0.88	a : 0.07	u : 0.03	
u : 0.99	
g : 0.99	
g : 0.88	u : 0.07	a : 0.03	
c : 0.96	a : 0.03	
u : 0.99	
a : 0.96	g : 0.03	
g : 0.99	
g : 0.92	a : 0.07	
c : 0.73	u : 0.26	
g : 0.84	a : 0.15	
g : 0.92	u : 0.07	
g : 0.92	c : 0.07	
u : 0.99	
g : 0.96	a : 0.03	
u : 0.99	
c : 0.96	u : 0.03	
c : 0.88	u : 0.07	g : 0.03	
c : 0.88	g : 0.03	a : 0.03	u : 0.03	
c : 0.92	u : 0.07	
u : 0.99	
u : 0.96	c : 0.03	
c : 0.99	
c : 0.99	
u : 0.96	c : 0.03	
c : 0.88	g : 0.03	a : 0.03	u : 0.03	
c : 0.96	u : 0.03	
c : 0.96	u : 0.03	
u : 0.99	
c : 0.96	u : 0.03	
a : 0.99	
c : 0.84	a : 0.07	u : 0.07	
c : 0.84	u : 0.15	
g : 0.49	a : 0.42	c : 0.07	
c : 0.92	u : 0.07	
u : 0.99	
c : 0.99	
c : 0.99	
a : 0.96	u : 0.03	
u : 0.69	c : 0.19	g : 0.11	
g : 0.92	a : 0.07	
u : 0.96	c : 0.03	
g : 0.92	a : 0.07	
c : 0.73	u : 0.26	
g : 0.73	a : 0.26	
u : 0.99	
c : 0.99	
c : 0.99	
c : 0.99	
u : 0.99	
c : 0.92	u : 0.07	
c : 0.92	u : 0.07	
c : 0.76	a : 0.11	g : 0.07	u : 0.03	
g : 0.73	a : 0.26	
a : 0.99	
a : 0.99	
g : 0.92	a : 0.07	
c : 0.80	u : 0.11	a : 0.03	g : 0.03	
u : 0.88	g : 0.07	c : 0.03	
g : 0.88	c : 0.07	u : 0.03	

#score	4306.153846153844
#seq	26
#width	70
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_CDS_m2_run2.nuc.txt

#NT
UUGGCCCCAUUUACGGGGACACCAGGGUAUUUUAGCAGCCAGCCACAUUCUGGAAACAGCACUGGCAGCAAUCUUCCAAGGAGGAGCUGCCCUUCUAGUGCUGCUAGCCCUACCCUGCAGGGACCCUCAGACUCGCCAACCUCAGAUUCAGUUUCUCAGUCCAGCACAGGAACUCUGAGUUCCACCUCCUUUCCUCAGAACUCUAGGUCGUCAUUGCCAUCAGACUUACGGACUAUCAGUCUGCCCAGUGCUGGGCAGUCAGCUGUCUACCAGGCCUCCAGGGUAUCUGCGGUUUCCA	chr3:9517337-9517681(+)$1	344	39	337	386.5000

#otherMatches

#Struct PSSM
!eeeeennnnneeeee]ccc]bb::DDDD~~~~GGGGGGGDDDDYYDDDD:ccc[ddddddddqqqqqqqqdddd4444ddddccc::::::::::CCC{EEEEE{JJJJJJJJJJJ:EEEEEMMMMHHHHHHHH:::::::::::hhhhhhhh####dddd####ccc^^^^^^^^^^^^^^^^^^^^ccc4444dddd>>>>>>>>>>>>>>>hhhhhhhh::ffffffdddd[dddd"""bbrrrrrrrrrbbdddd333dddd4444ffffff:::::HHHHHHHHYYEEEEE:	chr1:151400522-151400979(-)$1	457	104	402	386.5000
FFFFFcccooooooccc:::::GGGGGGGKKEEEEE::ddddpppppppdddd::::ffffffffffff!!eeeeemmmmeeeeeffffff55555ffffffEEEEEZZZGGGGGGG::dddd!!bb!!bb[bbssssssssssbb]bbbb22dddd:IIIIIIIII{BB:::ffffffwwwwwwwwwwwwwwffffff::::ffffffvvvvvvvvvvvvvfffffffffffflllffffff:BB}IIIIIIIII}FFFFFF}DDDD~~~~CCCZZZFFFFFF~~~~DDDD::::::	chr3:9517337-9517681(+)$1	344	39	337	386.5000

#DB
.(((((.....))))).))).))..))))....)))))))))))..)))).(((.((((((((........))))....)))))))..........(((.(((((.(((((((((((.(((((....((((((((...........((((((((....((((....(((....................)))....))))...............))))))))..((((((((((.((((...((.........))))))...))))....)))))).....))))))))..))))).	chr1:151400522-151400979(-)$1	1	104	402	386.5000
((((((((......))).....(((((((..(((((..((((.......))))....((((((((((((..(((((....))))))))))).....)))))))))))...)))))))..((((..((..((.((..........)).))))..)))).(((((((((.((...((((((..............))))))....((((((.............))))))((((((...)))))).)).))))))))).)))))).))))....)))...))))))....))))......	chr3:9517337-9517681(+)$1	1	39	337	386.5000

#PSSM
U : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	

#score	773.0
#seq	2
#width	298
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_UTR_m1_run1.nuc.txt

#NT
GGAGC	chr17:80151737-80152036(-)$1	299	143	148	15.0000
GGAGC	chr11:126145864-126146227(+)$1	363	152	157	15.0000
GGAGC	chr16:84215714-84216047(-)$1	333	106	111	15.0000
ggagc	chr14:73569933-73570260(+)$1	327	40	45	15.0000
ggagc	chr15:42129578-42129861(+)$1	283	159	164	15.0000
GGAGC	chr3:184103733-184103936(+)$1	203	123	128	15.0000
GGAGC	chr3:184099255-184099512(+)$1	257	41	46	15.0000
ggAGC	chr10:103577753-103578018(-)$1	265	123	128	15.0000
GGAGC	chr17:27074138-27074401(+)$1	263	199	204	15.0000
GGAGC	chr2:71357672-71357977(+)$1	305	155	160	15.0000
GGAGC	chr8:144678056-144678363(-)$1	307	296	301	15.0000
GGAGC	chr6:167412764-167413112(+)$1	348	71	76	15.0000
GGAGC	chr15:42129352-42129669(+)$1	317	3	8	15.0000
GGAGC	chr2:54197728-54198041(-)$1	313	50	55	15.0000
GGAGC	chr20:60909215-60909496(-)$1	281	143	148	15.0000
GGAGC	chr17:48629360-48629630(+)$1	270	256	261	15.0000
GGAGC	chr9:117031420-117031672(+)$1	252	129	134	15.0000
GGAGC	chr9:117052990-117053200(+)$1	210	101	106	15.0000
GGAGC	chr9:117020720-117020926(+)$1	206	136	141	15.0000
GGAGC	chr3:184103736-184103953(+)$1	217	120	125	15.0000
GGAGC	chr3:133292723-133293122(+)$1	399	3	8	15.0000
GGAGC	chr16:89348866-89349129(-)$1	263	118	123	15.0000
GGAGC	chr20:3869933-3870211(+)$1	278	212	217	15.0000
GGAGC	chr21:46915171-46915373(+)$1	202	138	143	15.0000
GGAGC	chr2:232576587-232576794(+)$1	207	26	31	15.0000
GGAGC	chr12:124093136-124093464(+)$1	328	296	301	15.0000
GGAGC	chr16:68265771-68266090(-)$1	319	45	50	15.0000
GGAGC	chr20:2820860-2821126(-)$1	266	137	142	15.0000
ggagc	chr1:21113569-21113904(-)$1	335	160	165	15.0000
GGAGC	chr19:1360067-1360399(+)$1	332	224	229	15.0000
GGAGC	chr8:124408489-124408772(-)$1	283	70	75	15.0000
GGAGC	chr2:232576581-232576787(+)$1	206	32	37	15.0000
GGAGC	chr19:39437030-39437285(-)$1	255	129	134	15.0000
GGAGC	chr9:100818961-100819252(+)$1	291	137	142	15.0000
GGAGC	chr16:89603638-89603942(+)$1	304	146	151	15.0000
GGAGC	chr9:117044456-117044662(+)$1	206	145	150	15.0000
GGAGC	chr1:29508046-29508391(-)$1	345	168	173	15.0000
GGAGC	chr2:61404600-61404860(+)$1	260	21	26	15.0000
GGAGC	chr17:34856573-34856893(-)$1	320	96	101	15.0000
GGAGC	chr6:32939492-32939729(+)$1	237	7	12	15.0000
GGAGC	chr16:89346553-89346829(-)$1	276	224	229	15.0000
GGAGC	chr11:14521142-14521444(-)$1	302	59	64	15.0000
GGAGC	chr4:124319265-124319549(+)$1	284	180	185	15.0000
GGAGC	chr14:62162315-62162649(+)$1	334	19	24	15.0000
GGAGC	chr3:185363038-185363307(-)$1	269	76	81	15.0000
GGAGC	chr11:82868102-82868352(+)$1	250	104	109	15.0000
GGAGC	chr16:22019563-22019861(+)$1	298	43	48	15.0000
GGAGC	chr3:48445743-48445997(-)$1	254	112	117	15.0000
GGAGC	chr17:63525938-63526230(-)$1	292	47	52	15.0000
GGAGC	chr16:841221-841474(+)$1	253	235	240	15.0000
GGAGC	chr17:40269709-40269932(-)$1	223	176	181	15.0000
GGAGC	chr18:55711818-55712041(+)$1	223	39	44	15.0000
GGAGC	chr16:22337033-22337349(+)$1	316	124	129	15.0000
GGAGC	chr19:19105847-19106166(-)$1	319	199	204	15.0000
GGAGC	chr2:232576515-232576781(+)$1	266	20	25	15.0000
GGAGC	chr9:117052460-117052710(+)$1	250	231	236	15.0000
GGAGC	chr17:74303484-74303752(-)$1	268	119	124	15.0000
GGAGC	chr2:128180520-128180764(+)$1	244	117	122	15.0000
GGAGC	chr6:32939471-32939692(+)$1	221	28	33	15.0000
GGAGC	chr14:23528234-23528478(-)$1	244	84	89	15.0000
GGAGC	chr2:27593044-27593302(-)$1	258	62	67	15.0000
GGAGC	chr5:78373202-78373526(+)$1	324	69	74	15.0000
GGAGC	chr6:31936968-31937257(+)$1	289	46	51	15.0000
GGAGC	chr11:67810936-67811207(+)$1	271	0	5	15.0000
GGAGC	chr12:26985932-26986192(-)$1	260	130	135	15.0000
GGAGC	chr2:61405877-61406193(+)$1	316	97	102	15.0000
GGAGC	chr14:39736608-39736858(+)$1	250	60	65	15.0000
GGAGC	chr17:73201687-73202001(+)$1	314	149	154	15.0000
GGAGC	chr11:66384000-66384290(+)$1	290	238	243	15.0000
GGAGC	chr12:6657484-6657801(-)$1	317	23	28	15.0000
GGAGC	chr16:89350981-89351318(-)$1	337	156	161	15.0000
GGAGC	chr14:35747709-35748024(+)$1	315	119	124	15.0000

#otherMatches

#Struct PSSM
CCMMM	chr5:172755106-172755408(-)$1	302	163	168	15.0000
fffff	chr17:80151737-80152036(-)$1	299	143	148	15.0000
ddlll	chr11:126145864-126146227(+)$1	363	152	157	15.0000
GGGGG	chr16:84215714-84216047(-)$1	333	106	111	15.0000
EEEEE	chr14:73569933-73570260(+)$1	327	40	45	15.0000
nnnee	chr15:42129578-42129861(+)$1	283	159	164	15.0000
CGGGG	chr3:184103733-184103936(+)$1	203	123	128	15.0000
dddd[	chr3:184099255-184099512(+)$1	257	41	46	15.0000
ZEEEE	chr10:103577753-103578018(-)$1	265	123	128	15.0000
eennn	chr17:27074138-27074401(+)$1	263	199	204	15.0000
555hh	chr2:71357672-71357977(+)$1	305	155	160	15.0000
A}EEE	chr8:144678056-144678363(-)$1	307	296	301	15.0000
gg]dd	chr6:167412764-167413112(+)$1	348	71	76	15.0000
EE{II	chr15:42129352-42129669(+)$1	317	3	8	15.0000
b22dd	chr2:54197728-54198041(-)$1	313	50	55	15.0000
eebb!	chr20:60909215-60909496(-)$1	281	143	148	15.0000
mmmdd	chr17:48629360-48629630(+)$1	270	256	261	15.0000
faccc	chr9:117031420-117031672(+)$1	252	129	134	15.0000
=====	chr9:117052990-117053200(+)$1	210	101	106	15.0000
hhhh]	chr9:117020720-117020926(+)$1	206	136	141	15.0000
dddee	chr3:184103736-184103953(+)$1	217	120	125	15.0000
BKKCC	chr3:133292723-133293122(+)$1	399	3	8	15.0000
h[ccc	chr16:89348866-89349129(-)$1	263	118	123	15.0000
bb]ee	chr20:3869933-3870211(+)$1	278	212	217	15.0000
ee::b	chr21:46915171-46915373(+)$1	202	138	143	15.0000
::::f	chr2:232576587-232576794(+)$1	207	26	31	15.0000
@@@@@	chr12:124093136-124093464(+)$1	328	296	301	15.0000
c!!bb	chr16:68265771-68266090(-)$1	319	45	50	15.0000
mmm==	chr20:2820860-2821126(-)$1	266	137	142	15.0000
mmmmb	chr1:21113569-21113904(-)$1	335	160	165	15.0000
dddd#	chr19:1360067-1360399(+)$1	332	224	229	15.0000
[aooo	chr8:124408489-124408772(-)$1	283	70	75	15.0000
::::f	chr2:232576581-232576787(+)$1	206	32	37	15.0000
hh:GG	chr19:39437030-39437285(-)$1	255	129	134	15.0000
h333c	chr9:100818961-100819252(+)$1	291	137	142	15.0000
nnnn=	chr16:89603638-89603942(+)$1	304	146	151	15.0000
ee]bb	chr9:117044456-117044662(+)$1	206	145	150	15.0000
hhhhh	chr1:29508046-29508391(-)$1	345	168	173	15.0000
{BB{D	chr2:61404600-61404860(+)$1	260	21	26	15.0000
cEEEE	chr17:34856573-34856893(-)$1	320	96	101	15.0000
D{A{D	chr6:32939492-32939729(+)$1	237	7	12	15.0000
gggg[	chr16:89346553-89346829(-)$1	276	224	229	15.0000
cc[bb	chr11:14521142-14521444(-)$1	302	59	64	15.0000
ffff!	chr4:124319265-124319549(+)$1	284	180	185	15.0000
eeeee	chr14:62162315-62162649(+)$1	334	19	24	15.0000
bwwww	chr3:185363038-185363307(-)$1	269	76	81	15.0000
EE:bb	chr11:82868102-82868352(+)$1	250	104	109	15.0000
h"""c	chr16:22019563-22019861(+)$1	298	43	48	15.0000
ee[cc	chr3:48445743-48445997(-)$1	254	112	117	15.0000
llldd	chr17:63525938-63526230(-)$1	292	47	52	15.0000
dd333	chr16:841221-841474(+)$1	253	235	240	15.0000
ccccc	chr17:40269709-40269932(-)$1	223	176	181	15.0000
]a]dd	chr18:55711818-55712041(+)$1	223	39	44	15.0000
rrrcc	chr16:22337033-22337349(+)$1	316	124	129	15.0000
FFFCC	chr19:19105847-19106166(-)$1	319	199	204	15.0000
GGGGG	chr2:232576515-232576781(+)$1	266	20	25	15.0000
JJJJJ	chr9:117052460-117052710(+)$1	250	231	236	15.0000
DDDD}	chr17:74303484-74303752(-)$1	268	119	124	15.0000
dd[dd	chr2:128180520-128180764(+)$1	244	117	122	15.0000
ff[dd	chr6:32939471-32939692(+)$1	221	28	33	15.0000
"""dd	chr14:23528234-23528478(-)$1	244	84	89	15.0000
hhhhh	chr2:27593044-27593302(-)$1	258	62	67	15.0000
llldd	chr5:78373202-78373526(+)$1	324	69	74	15.0000
cc!!d	chr6:31936968-31937257(+)$1	289	46	51	15.0000
DDDDB	chr11:67810936-67811207(+)$1	271	0	5	15.0000
DZZZC	chr12:26985932-26986192(-)$1	260	130	135	15.0000
EEEEE	chr2:61405877-61406193(+)$1	316	97	102	15.0000
!ccc"	chr14:39736608-39736858(+)$1	250	60	65	15.0000
bb[cc	chr17:73201687-73202001(+)$1	314	149	154	15.0000
}BB}G	chr11:66384000-66384290(+)$1	290	238	243	15.0000
BKKFF	chr12:6657484-6657801(-)$1	317	23	28	15.0000
###bb	chr16:89350981-89351318(-)$1	337	156	161	15.0000
mmmgg	chr14:35747709-35748024(+)$1	315	119	124	15.0000

#DB
((...	chr5:172755106-172755408(-)$1	1	163	168	15.0000
)))))	chr17:80151737-80152036(-)$1	1	143	148	15.0000
((...	chr11:126145864-126146227(+)$1	1	152	157	15.0000
)))))	chr16:84215714-84216047(-)$1	1	106	111	15.0000
(((((	chr14:73569933-73570260(+)$1	1	40	45	15.0000
...))	chr15:42129578-42129861(+)$1	1	159	164	15.0000
)))))	chr3:184103733-184103936(+)$1	1	123	128	15.0000
((((.	chr3:184099255-184099512(+)$1	1	41	46	15.0000
.))))	chr10:103577753-103578018(-)$1	1	123	128	15.0000
((...	chr17:27074138-27074401(+)$1	1	199	204	15.0000
...))	chr2:71357672-71357977(+)$1	1	155	160	15.0000
).)))	chr8:144678056-144678363(-)$1	1	296	301	15.0000
)).))	chr6:167412764-167413112(+)$1	1	71	76	15.0000
((.((	chr15:42129352-42129669(+)$1	1	3	8	15.0000
)..))	chr2:54197728-54198041(-)$1	1	50	55	15.0000
((((.	chr20:60909215-60909496(-)$1	1	143	148	15.0000
...))	chr17:48629360-48629630(+)$1	1	256	261	15.0000
)))))	chr9:117031420-117031672(+)$1	1	129	134	15.0000
)))))	chr9:117052990-117053200(+)$1	1	101	106	15.0000
)))).	chr9:117020720-117020926(+)$1	1	136	141	15.0000
)))((	chr3:184103736-184103953(+)$1	1	120	125	15.0000
(..((	chr3:133292723-133293122(+)$1	1	3	8	15.0000
(.(((	chr16:89348866-89349129(-)$1	1	118	123	15.0000
)).))	chr20:3869933-3870211(+)$1	1	212	217	15.0000
))..(	chr21:46915171-46915373(+)$1	1	138	143	15.0000
....(	chr2:232576587-232576794(+)$1	1	26	31	15.0000
.....	chr12:124093136-124093464(+)$1	1	296	301	15.0000
(..((	chr16:68265771-68266090(-)$1	1	45	50	15.0000
...))	chr20:2820860-2821126(-)$1	1	137	142	15.0000
....)	chr1:21113569-21113904(-)$1	1	160	165	15.0000
((((.	chr19:1360067-1360399(+)$1	1	224	229	15.0000
.(...	chr8:124408489-124408772(-)$1	1	70	75	15.0000
....(	chr2:232576581-232576787(+)$1	1	32	37	15.0000
)).((	chr19:39437030-39437285(-)$1	1	129	134	15.0000
)...)	chr9:100818961-100819252(+)$1	1	137	142	15.0000
....)	chr16:89603638-89603942(+)$1	1	146	151	15.0000
)).))	chr9:117044456-117044662(+)$1	1	145	150	15.0000
(((((	chr1:29508046-29508391(-)$1	1	168	173	15.0000
.((.(	chr2:61404600-61404860(+)$1	1	21	26	15.0000
)((((	chr17:34856573-34856893(-)$1	1	96	101	15.0000
(.(.(	chr6:32939492-32939729(+)$1	1	7	12	15.0000
((((.	chr16:89346553-89346829(-)$1	1	224	229	15.0000
((.((	chr11:14521142-14521444(-)$1	1	59	64	15.0000
((((.	chr4:124319265-124319549(+)$1	1	180	185	15.0000
(((((	chr14:62162315-62162649(+)$1	1	19	24	15.0000
(....	chr3:185363038-185363307(-)$1	1	76	81	15.0000
((.((	chr11:82868102-82868352(+)$1	1	104	109	15.0000
(...(	chr16:22019563-22019861(+)$1	1	43	48	15.0000
((.((	chr3:48445743-48445997(-)$1	1	112	117	15.0000
...))	chr17:63525938-63526230(-)$1	1	47	52	15.0000
))...	chr16:841221-841474(+)$1	1	235	240	15.0000
(((((	chr17:40269709-40269932(-)$1	1	176	181	15.0000
.).))	chr18:55711818-55712041(+)$1	1	39	44	15.0000
...))	chr16:22337033-22337349(+)$1	1	124	129	15.0000
)))))	chr19:19105847-19106166(-)$1	1	199	204	15.0000
(((((	chr2:232576515-232576781(+)$1	1	20	25	15.0000
)))))	chr9:117052460-117052710(+)$1	1	231	236	15.0000
)))).	chr17:74303484-74303752(-)$1	1	119	124	15.0000
((.((	chr2:128180520-128180764(+)$1	1	117	122	15.0000
((.((	chr6:32939471-32939692(+)$1	1	28	33	15.0000
...((	chr14:23528234-23528478(-)$1	1	84	89	15.0000
)))))	chr2:27593044-27593302(-)$1	1	62	67	15.0000
...))	chr5:78373202-78373526(+)$1	1	69	74	15.0000
((..(	chr6:31936968-31937257(+)$1	1	46	51	15.0000
(((((	chr11:67810936-67811207(+)$1	1	0	5	15.0000
)...)	chr12:26985932-26986192(-)$1	1	130	135	15.0000
(((((	chr2:61405877-61406193(+)$1	1	97	102	15.0000
.(((.	chr14:39736608-39736858(+)$1	1	60	65	15.0000
((.((	chr17:73201687-73202001(+)$1	1	149	154	15.0000
.)).)	chr11:66384000-66384290(+)$1	1	238	243	15.0000
(..((	chr12:6657484-6657801(-)$1	1	23	28	15.0000
...((	chr16:89350981-89351318(-)$1	1	156	161	15.0000
...))	chr14:35747709-35748024(+)$1	1	119	124	15.0000

#PSSM
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	
C : 0.95	c : 0.04	

#score	1095.0000000000005
#seq	73
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_transcript_m1_run2.nuc.txt

#NT
GCGGUGG	chr21:44395404-44395656(+)$1	252	0	7	13.2222
GCUGCGG	chr16:1428701-1428912(-)$1	211	14	21	13.7777
gccgcgg	chr11:10529723-10529946(-)$1	223	108	115	13.7777
GCGGGGG	chr16:88567245-88567500(+)$1	255	240	247	13.3333
gcggcgg	chr15:30113797-30114134(-)$1	337	41	48	17.1111
GCGGCGG	chr7:156931810-156932053(+)$1	243	119	126	17.1111
GCGGCGG	chr4:78740066-78740319(-)$1	253	42	49	17.1111
GCCGCGG	chr19:1409194-1409446(+)$1	252	121	128	13.7777
GCGGCAG	chr1:31380437-31380764(-)$1	327	52	59	12.6666
GCGGCCG	chr19:4033484-4033721(+)$1	237	117	124	12.6666
GGGGCGG	chr19:2270119-2270388(+)$1	269	106	113	13.6666
GUGGCGG	chr17:34171767-34172045(+)$1	278	199	206	13.3333
GCGGUGG	chr13:114555699-114555930(-)$1	231	16	23	13.2222
CCGGCGG	chr19:47730766-47731008(-)$1	242	36	43	12.6666
GCGGCGG	chr7:5569826-5570059(-)$1	233	210	217	17.1111
GCGGCUG	chr12:123868702-123868983(+)$1	281	80	87	12.7777
GAGGCGG	chr22:35740135-35740436(+)$1	301	62	69	13.3333
CCGGCGG	chr17:80054957-80055214(-)$1	257	11	18	12.6666
gccgcgg	chr15:89878264-89878480(+)$1	216	102	109	13.7777
GCGGGGG	chr22:49993549-49993821(-)$1	272	164	171	13.3333
GCGGCGG	chr11:64014144-64014445(-)$1	301	65	72	17.1111
GCGGGGG	chr3:128212038-128212287(+)$1	249	48	55	13.3333
GUGGCGG	chr8:145149927-145150237(+)$1	310	49	56	13.3333
GGGGCGG	chr19:956339-956587(+)$1	248	119	126	13.6666
GCGGGGG	chr12:123997837-123998097(-)$1	260	251	258	13.3333
UCGGCGG	chr1:231557659-231557912(-)$1	253	46	53	12.5555
gcggcgg	chr1:32403758-32404012(-)$1	254	24	31	17.1111
GCUGCGG	chr19:2270583-2270842(+)$1	259	31	38	13.7777
GCUGCGG	chr22:20067863-20068143(+)$1	280	7	14	13.7777
GCGGCGG	chr19:18530345-18530622(+)$1	277	92	99	17.1111
gcggcgg	chr1:1821915-1822162(-)$1	247	28	35	17.1111
GCAGCGG	chr19:803388-803670(+)$1	282	168	175	13.6666
gcggcgg	chr12:123873341-123873765(+)$1	424	323	330	17.1111
GCCGCGG	chr22:35736207-35736451(+)$1	244	172	179	13.7777
GCGGCGG	chr19:14551859-14552125(+)$1	266	199	206	17.1111
GCGGUGG	chr22:20110900-20111147(+)$1	247	107	114	13.2222
GCGACGG	chr16:89556373-89556606(-)$1	233	38	45	12.3333
GCGGCUG	chr19:1419338-1419557(+)$1	219	190	197	12.7777
GGGGCGG	chr9:96432336-96432573(+)$1	237	223	230	13.6666
GCAGCGG	chrM:10580-10786(+)$1	206	100	107	13.6666
gagGCGG	chr8:645322-645589(-)$1	267	104	111	13.3333
GCAGCGG	chr8:1780064-1780416(+)$1	352	173	180	13.6666
GGGGCGG	chr19:3359688-3359937(+)$1	249	87	94	13.6666
GGGGCGG	chr22:50042307-50042552(-)$1	245	44	51	13.6666

#otherMatches

#Struct PSSM
IIIIICC	chr9:139730321-139730589(+)$1	268	13	20	13.7777
:a[cccd	chr21:44395404-44395656(+)$1	252	0	7	13.2222
eeeee++	chr16:1428701-1428912(-)$1	211	14	21	13.7777
cc]eeee	chr11:10529723-10529946(-)$1	223	108	115	13.7777
B}CCCDD	chr16:88567245-88567500(+)$1	255	240	247	13.3333
[dddduu	chr15:30113797-30114134(-)$1	337	41	48	17.1111
!!fffff	chr7:156931810-156932053(+)$1	243	119	126	17.1111
iii[ddd	chr4:78740066-78740319(-)$1	253	42	49	17.1111
hhhhhhh	chr19:1409194-1409446(+)$1	252	121	128	13.7777
eammmma	chr1:31380437-31380764(-)$1	327	52	59	12.6666
DD::GGG	chr19:4033484-4033721(+)$1	237	117	124	12.6666
"""eeee	chr19:2270119-2270388(+)$1	269	106	113	13.6666
CCYYA}G	chr17:34171767-34172045(+)$1	278	199	206	13.3333
ooooobb	chr13:114555699-114555930(-)$1	231	16	23	13.2222
hhccc]e	chr19:47730766-47731008(-)$1	242	36	43	12.6666
HHHHHHH	chr7:5569826-5570059(-)$1	233	210	217	17.1111
nnnnddd	chr12:123868702-123868983(+)$1	281	80	87	12.7777
eeeeevv	chr22:35740135-35740436(+)$1	301	62	69	13.3333
ff[a[bb	chr17:80054957-80055214(-)$1	257	11	18	12.6666
eeGGGGG	chr15:89878264-89878480(+)$1	216	102	109	13.7777
JJJJJJY	chr22:49993549-49993821(-)$1	272	164	171	13.3333
::IIIII	chr11:64014144-64014445(-)$1	301	65	72	17.1111
bCCCEEE	chr3:128212038-128212287(+)$1	249	48	55	13.3333
hh]a]dd	chr8:145149927-145150237(+)$1	310	49	56	13.3333
dddd:::	chr19:956339-956587(+)$1	248	119	126	13.6666
}BBEEEE	chr12:123997837-123998097(-)$1	260	251	258	13.3333
444gggg	chr1:231557659-231557912(-)$1	253	46	53	12.5555
fffcccc	chr1:32403758-32404012(-)$1	254	24	31	17.1111
ddmmmmd	chr19:2270583-2270842(+)$1	259	31	38	13.7777
EEEEEKK	chr22:20067863-20068143(+)$1	280	7	14	13.7777
CC:::dd	chr19:18530345-18530622(+)$1	277	92	99	17.1111
{DDDD::	chr1:1821915-1822162(-)$1	247	28	35	17.1111
ffffff]	chr19:803388-803670(+)$1	282	168	175	13.6666
HHCCC}B	chr12:123873341-123873765(+)$1	424	323	330	17.1111
fffff::	chr22:35736207-35736451(+)$1	244	172	179	13.7777
HHHdddd	chr19:14551859-14552125(+)$1	266	199	206	17.1111
[ammmma	chr22:20110900-20111147(+)$1	247	107	114	13.2222
HHKKA{E	chr16:89556373-89556606(-)$1	233	38	45	12.3333
ddddddd	chr19:1419338-1419557(+)$1	219	190	197	12.7777
DDD}AII	chr9:96432336-96432573(+)$1	237	223	230	13.6666
ccceeee	chrM:10580-10786(+)$1	206	100	107	13.6666
a[eeeee	chr8:645322-645589(-)$1	267	104	111	13.3333
HHHHHEE	chr8:1780064-1780416(+)$1	352	173	180	13.6666
d22dddd	chr19:3359688-3359937(+)$1	249	87	94	13.6666
HHHHH::	chr22:50042307-50042552(-)$1	245	44	51	13.6666

#DB
(((((((	chr9:139730321-139730589(+)$1	1	13	20	13.7777
.(.((((	chr21:44395404-44395656(+)$1	1	0	7	13.2222
(((((..	chr16:1428701-1428912(-)$1	1	14	21	13.7777
)).))))	chr11:10529723-10529946(-)$1	1	108	115	13.7777
).)))))	chr16:88567245-88567500(+)$1	1	240	247	13.3333
.((((..	chr15:30113797-30114134(-)$1	1	41	48	17.1111
..(((((	chr7:156931810-156932053(+)$1	1	119	126	17.1111
(((.(((	chr4:78740066-78740319(-)$1	1	42	49	17.1111
(((((((	chr19:1409194-1409446(+)$1	1	121	128	13.7777
((....)	chr1:31380437-31380764(-)$1	1	52	59	12.6666
))..(((	chr19:4033484-4033721(+)$1	1	117	124	12.6666
...((((	chr19:2270119-2270388(+)$1	1	106	113	13.6666
))..).)	chr17:34171767-34172045(+)$1	1	199	206	13.3333
.....))	chr13:114555699-114555930(-)$1	1	16	23	13.2222
))))).)	chr19:47730766-47731008(-)$1	1	36	43	12.6666
)))))))	chr7:5569826-5570059(-)$1	1	210	217	17.1111
....)))	chr12:123868702-123868983(+)$1	1	80	87	12.7777
(((((..	chr22:35740135-35740436(+)$1	1	62	69	13.3333
((.(.((	chr17:80054957-80055214(-)$1	1	11	18	12.6666
)))))))	chr15:89878264-89878480(+)$1	1	102	109	13.7777
)))))).	chr22:49993549-49993821(-)$1	1	164	171	13.3333
..(((((	chr11:64014144-64014445(-)$1	1	65	72	17.1111
)))))))	chr3:128212038-128212287(+)$1	1	48	55	13.3333
)).).))	chr8:145149927-145150237(+)$1	1	49	56	13.3333
))))...	chr19:956339-956587(+)$1	1	119	126	13.6666
.))))))	chr12:123997837-123998097(-)$1	1	251	258	13.3333
...))))	chr1:231557659-231557912(-)$1	1	46	53	12.5555
)))((((	chr1:32403758-32404012(-)$1	1	24	31	17.1111
((....)	chr19:2270583-2270842(+)$1	1	31	38	13.7777
(((((..	chr22:20067863-20068143(+)$1	1	7	14	13.7777
((...((	chr19:18530345-18530622(+)$1	1	92	99	17.1111
.((((..	chr1:1821915-1822162(-)$1	1	28	35	17.1111
)))))).	chr19:803388-803670(+)$1	1	168	175	13.6666
))))).)	chr12:123873341-123873765(+)$1	1	323	330	17.1111
)))))..	chr22:35736207-35736451(+)$1	1	172	179	13.7777
)))((((	chr19:14551859-14552125(+)$1	1	199	206	17.1111
.(....)	chr22:20110900-20111147(+)$1	1	107	114	13.2222
((..(.(	chr16:89556373-89556606(-)$1	1	38	45	12.3333
)))))))	chr19:1419338-1419557(+)$1	1	190	197	12.7777
))).)))	chr9:96432336-96432573(+)$1	1	223	230	13.6666
)))))))	chrM:10580-10786(+)$1	1	100	107	13.6666
(.(((((	chr8:645322-645589(-)$1	1	104	111	13.3333
(((((((	chr8:1780064-1780416(+)$1	1	173	180	13.6666
)..))))	chr19:3359688-3359937(+)$1	1	87	94	13.6666
(((((..	chr22:50042307-50042552(-)$1	1	44	51	13.6666

#PSSM
G : 0.77	g : 0.15	C : 0.04	U : 0.02	
C : 0.66	c : 0.13	G : 0.11	U : 0.04	A : 0.02	a : 0.02	
G : 0.64	g : 0.11	U : 0.08	A : 0.06	c : 0.04	C : 0.04	
G : 0.84	g : 0.13	A : 0.02	
C : 0.71	c : 0.13	G : 0.08	U : 0.06	
G : 0.77	g : 0.13	U : 0.04	A : 0.02	C : 0.02	
G : 0.86	g : 0.13	

#score	638.1111111111112
#seq	45
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_UTR_m1_run1.nuc.txt

#NT
UUCCCCUG	chr1:155217954-155218195(-)$1	241	209	217	13.8837
UGCCCCAG	chr8:11702171-11702417(-)$1	246	43	51	14.1162
UUCCCCAU	chr2:32447714-32447991(+)$1	277	236	244	14.5813
CUCCCCAG	chr15:99502127-99502342(+)$1	215	121	129	13.8837
UUCUCCAG	chr11:64571444-64571695(-)$1	251	50	58	15.8604
UUCCUCAG	chr11:115045606-115045900(-)$1	294	114	122	14.6976
UUCCCCAG	chr20:43571214-43571517(-)$1	303	128	136	18.4186
UUCCCCUG	chr11:119207648-119207932(+)$1	284	185	193	13.8837
UUCCCCAC	chr19:3122807-3123069(+)$1	262	148	156	14.5813
UUCCCGAG	chr1:44088524-44088775(+)$1	251	117	125	13.6511
UUCUCCAG	chr11:64880930-64881167(+)$1	237	24	32	15.8604
UUGUCCAG	chr20:30783521-30783793(-)$1	272	98	106	12.6046
UUCCCCAC	chr3:127788828-127789062(+)$1	234	12	20	14.5813
UUCCACAG	chr10:28897134-28897387(+)$1	253	103	111	14.2325
UUCUUCAG	chr9:80332884-80333145(-)$1	261	100	108	12.1395
UUCUCCAG	chr2:27263823-27264137(+)$1	314	280	288	15.8604
UUCACCAG	chr20:54943479-54943732(+)$1	253	156	164	15.5116
UACCCCAG	chr11:46698621-46698896(-)$1	275	137	145	14.1162
UUCCCCAC	chr20:5171240-5171501(+)$1	261	37	45	14.5813
UUCCCCAG	chr2:135211034-135211330(+)$1	296	120	128	18.4186
UUCCCCAA	chr20:3143920-3144177(-)$1	257	51	59	14.3488
uuuuccag	chr14:75600139-75600393(-)$1	254	104	112	13.4186
UUUACCAG	chr7:128410321-128410578(+)$1	257	111	119	13.0697
UUUACCAG	chr7:128410381-128410615(+)$1	234	51	59	13.0697
CUCCCCAG	chr2:219142001-219142248(-)$1	247	64	72	13.8837
UUCCCCAG	chr16:57286277-57286608(+)$1	331	205	213	18.4186
UUCCCCAU	chr2:27264259-27264527(+)$1	268	104	112	14.5813
UUCUCCAG	chr2:96851960-96852239(-)$1	279	152	160	15.8604
UUUCCCAG	chr12:111893903-111894158(-)$1	255	232	240	15.9767
UACCCCAG	chr2:208628320-208628573(-)$1	253	184	192	14.1162
UUCCUCAG	chr17:42397030-42397264(-)$1	234	59	67	14.6976
UUUCUCAG	chr5:1318184-1318471(-)$1	287	106	114	12.2558
UUACCCAG	chr10:73820608-73820928(-)$1	320	58	66	15.1627
UUCCCCAG	chr20:30253360-30253614(-)$1	254	238	246	18.4186
UGCCCCAG	chr19:1300681-1300968(+)$1	287	47	55	14.1162
UUUACCAG	chrX:131507909-131508142(-)$1	233	221	229	13.0697
UUCUUCAG	chr12:121137327-121137579(+)$1	252	163	171	12.1395
UUUCCCAG	chr1:87572940-87573193(+)$1	253	54	62	15.9767
UUUCCCAG	chr19:2071575-2071815(-)$1	240	64	72	15.9767
UUCCCCAU	chr15:55906446-55906720(-)$1	274	185	193	14.5813
uugcccag	chrX:24095364-24095602(+)$1	238	108	116	15.1627
UUACCCAG	chr6:142766212-142766441(+)$1	229	129	137	15.1627

#otherMatches

#Struct PSSM
UUUUUFFF	chrX:131507746-131507964(-)$1	218	43	51	13.0697
@EEEEEYY	chr1:155217954-155218195(-)$1	241	209	217	13.8837
:ccc[ccc	chr8:11702171-11702417(-)$1	246	43	51	14.1162
FFFFFFdd	chr2:32447714-32447991(+)$1	277	236	244	14.5813
fffccc]f	chr15:99502127-99502342(+)$1	215	121	129	13.8837
22ccc22c	chr11:64571444-64571695(-)$1	251	50	58	15.8604
:FFFFFFK	chr11:115045606-115045900(-)$1	294	114	122	14.6976
>>>>>>>>	chr20:43571214-43571517(-)$1	303	128	136	18.4186
dddddddd	chr11:119207648-119207932(+)$1	284	185	193	13.8837
ggggggg8	chr19:3122807-3123069(+)$1	262	148	156	14.5813
ffffmmmm	chr1:44088524-44088775(+)$1	251	117	125	13.6511
FFFFFF:b	chr11:64880930-64881167(+)$1	237	24	32	15.8604
fff::DDD	chr20:30783521-30783793(-)$1	272	98	106	12.6046
eeeeeooo	chr3:127788828-127789062(+)$1	234	12	20	14.5813
uuuudddd	chr10:28897134-28897387(+)$1	253	103	111	14.2325
^^^^^^^d	chr9:80332884-80333145(-)$1	261	100	108	12.1395
^^^^^ddd	chr2:27263823-27264137(+)$1	314	280	288	15.8604
sssssssc	chr20:54943479-54943732(+)$1	253	156	164	15.5116
22ffffff	chr11:46698621-46698896(-)$1	275	137	145	14.1162
mmdddd::	chr20:5171240-5171501(+)$1	261	37	45	14.5813
{BB::ddd	chr2:135211034-135211330(+)$1	296	120	128	18.4186
{CCCLLLB	chr20:3143920-3144177(-)$1	257	51	59	14.3488
:::::::h	chr14:75600139-75600393(-)$1	254	104	112	13.4186
eeeeccc[	chr7:128410321-128410578(+)$1	257	111	119	13.0697
::::ccc[	chr7:128410381-128410615(+)$1	234	51	59	13.0697
qqqqqccc	chr2:219142001-219142248(-)$1	247	64	72	13.8837
::::ffff	chr16:57286277-57286608(+)$1	331	205	213	18.4186
::eeeeeo	chr2:27264259-27264527(+)$1	268	104	112	14.5813
eeefffff	chr2:96851960-96852239(-)$1	279	152	160	15.8604
mccc333b	chr12:111893903-111894158(-)$1	255	232	240	15.9767
GGGGGG::	chr2:208628320-208628573(-)$1	253	184	192	14.1162
NNNNNHHH	chr17:42397030-42397264(-)$1	234	59	67	14.6976
::::::::	chr5:1318184-1318471(-)$1	287	106	114	12.2558
fffffa!!	chr10:73820608-73820928(-)$1	320	58	66	15.1627
eeqqqqqq	chr20:30253360-30253614(-)$1	254	238	246	18.4186
qqqqqccc	chr19:1300681-1300968(+)$1	287	47	55	14.1162
8dddd22d	chrX:131507909-131508142(-)$1	233	221	229	13.0697
=====!!b	chr12:121137327-121137579(+)$1	252	163	171	12.1395
###dddd[	chr1:87572940-87573193(+)$1	253	54	62	15.9767
ccffffff	chr19:2071575-2071815(-)$1	240	64	72	15.9767
::EEEEEZ	chr15:55906446-55906720(-)$1	274	185	193	14.5813
}CCCYYEE	chrX:24095364-24095602(+)$1	238	108	116	15.1627
qqqqqqqd	chr6:142766212-142766441(+)$1	229	129	137	15.1627

#DB
.....(((	chrX:131507746-131507964(-)$1	1	43	51	13.0697
.)))))..	chr1:155217954-155218195(-)$1	1	209	217	13.8837
.(((.(((	chr8:11702171-11702417(-)$1	1	43	51	14.1162
))))))((	chr2:32447714-32447991(+)$1	1	236	244	14.5813
)))))).)	chr15:99502127-99502342(+)$1	1	121	129	13.8837
..)))..)	chr11:64571444-64571695(-)$1	1	50	58	15.8604
.((((((.	chr11:115045606-115045900(-)$1	1	114	122	14.6976
........	chr20:43571214-43571517(-)$1	1	128	136	18.4186
))))))))	chr11:119207648-119207932(+)$1	1	185	193	13.8837
))))))).	chr19:3122807-3123069(+)$1	1	148	156	14.5813
((((....	chr1:44088524-44088775(+)$1	1	117	125	13.6511
((((((.(	chr11:64880930-64881167(+)$1	1	24	32	15.8604
)))..(((	chr20:30783521-30783793(-)$1	1	98	106	12.6046
(((((...	chr3:127788828-127789062(+)$1	1	12	20	14.5813
....))))	chr10:28897134-28897387(+)$1	1	103	111	14.2325
.......)	chr9:80332884-80333145(-)$1	1	100	108	12.1395
.....)))	chr2:27263823-27264137(+)$1	1	280	288	15.8604
.......)	chr20:54943479-54943732(+)$1	1	156	164	15.5116
..))))))	chr11:46698621-46698896(-)$1	1	137	145	14.1162
..))))..	chr20:5171240-5171501(+)$1	1	37	45	14.5813
.((..(((	chr2:135211034-135211330(+)$1	1	120	128	18.4186
.(((...(	chr20:3143920-3144177(-)$1	1	51	59	14.3488
.......(	chr14:75600139-75600393(-)$1	1	104	112	13.4186
))))(((.	chr7:128410321-128410578(+)$1	1	111	119	13.0697
....(((.	chr7:128410381-128410615(+)$1	1	51	59	13.0697
.....)))	chr2:219142001-219142248(-)$1	1	64	72	13.8837
....((((	chr16:57286277-57286608(+)$1	1	205	213	18.4186
..(((((.	chr2:27264259-27264527(+)$1	1	104	112	14.5813
)))(((((	chr2:96851960-96852239(-)$1	1	152	160	15.8604
.)))...)	chr12:111893903-111894158(-)$1	1	232	240	15.9767
((((((..	chr2:208628320-208628573(-)$1	1	184	192	14.1162
.....(((	chr17:42397030-42397264(-)$1	1	59	67	14.6976
........	chr5:1318184-1318471(-)$1	1	106	114	12.2558
((((((..	chr10:73820608-73820928(-)$1	1	58	66	15.1627
((......	chr20:30253360-30253614(-)$1	1	238	246	18.4186
.....)))	chr19:1300681-1300968(+)$1	1	47	55	14.1162
.))))..)	chrX:131507909-131508142(-)$1	1	221	229	13.0697
(((((..(	chr12:121137327-121137579(+)$1	1	163	171	12.1395
...((((.	chr1:87572940-87573193(+)$1	1	54	62	15.9767
((((((((	chr19:2071575-2071815(-)$1	1	64	72	15.9767
..))))).	chr15:55906446-55906720(-)$1	1	185	193	14.5813
.)))..))	chrX:24095364-24095602(+)$1	1	108	116	15.1627
.......)	chr6:142766212-142766441(+)$1	1	129	137	15.1627

#PSSM
U : 0.90	C : 0.04	u : 0.04	
U : 0.86	G : 0.04	A : 0.04	u : 0.04	
C : 0.69	U : 0.18	A : 0.04	G : 0.02	u : 0.02	g : 0.02	
C : 0.67	U : 0.16	A : 0.11	u : 0.02	c : 0.02	
C : 0.81	U : 0.11	c : 0.04	A : 0.02	
C : 0.93	c : 0.04	G : 0.02	
A : 0.90	U : 0.04	a : 0.04	
G : 0.79	U : 0.06	C : 0.06	g : 0.04	A : 0.02	

#score	632.0000000000001
#seq	43
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_UTR_m1_run1.nuc.txt

#NT
CAGG	chr6:31911593-31911800(+)$1	207	25	29	11.9999
CAGG	chr6:31919559-31919805(+)$1	246	23	27	11.9999
CAGG	chr1:155112326-155112623(-)$1	297	9	13	11.9999
CAGG	chr17:76967768-76968017(-)$1	249	15	19	11.9999
CAGG	chr11:118923292-118923548(-)$1	256	197	201	11.9999
CAGG	chr17:76969143-76969402(-)$1	259	102	106	11.9999
CAGG	chr2:216229528-216229746(-)$1	218	161	165	11.9999
CAGG	chr6:31911092-31911351(+)$1	259	8	12	11.9999
CAGG	chr19:14676455-14676686(+)$1	231	17	21	11.9999
CAGG	chr9:117093806-117094022(+)$1	216	185	189	11.9999
CAGG	chr1:201112868-201113157(-)$1	289	75	79	11.9999
CAGG	chr21:46914714-46914929(+)$1	215	20	24	11.9999
CAGG	chr5:179135198-179135435(+)$1	237	80	84	11.9999
CAGG	chr11:118922536-118922762(-)$1	226	4	8	11.9999
CAGG	chr17:79803365-79803585(-)$1	220	142	146	11.9999
CAGG	chr6:31237642-31237858(-)$1	216	113	117	11.9999
CAGG	chr9:101980832-101981117(-)$1	285	22	26	11.9999
CAGG	chr14:75601492-75601759(-)$1	267	121	125	11.9999
CAGG	chr17:46133837-46134058(+)$1	221	0	4	11.9999
CAGG	chr17:46133723-46133963(+)$1	240	21	25	11.9999
CAGG	chr19:11241855-11242102(+)$1	247	12	16	11.9999
CAGG	chr22:45937932-45938223(+)$1	291	217	221	11.9999
CAGG	chr5:151051047-151051343(-)$1	296	22	26	11.9999
CAGG	chr1:40554997-40555218(-)$1	221	58	62	11.9999
CAGG	chr19:19230694-19230957(-)$1	263	208	212	11.9999
CAGG	chr17:64224093-64224301(-)$1	208	50	54	11.9999
CAGG	chr1:52489108-52489347(-)$1	239	33	37	11.9999
CAGG	chr2:128180407-128180617(+)$1	210	53	57	11.9999
CAGG	chr12:58109442-58109664(+)$1	222	119	123	11.9999
CAGG	chr14:93170889-93171124(-)$1	235	137	141	11.9999
CAGG	chr1:156263834-156264118(-)$1	284	44	48	11.9999
CAGG	chr17:76968522-76968752(-)$1	230	44	48	11.9999
CAGG	chr17:76167529-76167813(+)$1	284	211	215	11.9999
CAGG	chr19:14676354-14676575(+)$1	221	13	17	11.9999
CAGG	chr17:26696427-26696637(-)$1	210	11	15	11.9999
CAGG	chr12:9310916-9311178(-)$1	262	37	41	11.9999
CAGG	chr7:75609556-75609759(+)$1	203	12	16	11.9999
CAGG	chr15:79219957-79220223(-)$1	266	97	101	11.9999
CAGG	chr9:124074630-124074855(+)$1	225	43	47	11.9999
CAGG	chr8:11703151-11703397(-)$1	246	96	100	11.9999
CAGG	chr11:118920196-118920414(-)$1	218	144	148	11.9999
CAGG	chr12:50152120-50152360(+)$1	240	114	118	11.9999
CAGG	chr17:79817056-79817290(-)$1	234	112	116	11.9999
CAGG	chr7:56142176-56142457(+)$1	281	106	110	11.9999
CAGG	chr11:902861-903128(-)$1	267	209	213	11.9999
CAGG	chr2:97400044-97400295(-)$1	251	59	63	11.9999
CAGG	chr11:6638174-6638416(-)$1	242	88	92	11.9999
CAGG	chr21:46914368-46914585(+)$1	217	16	20	11.9999
CAGG	chr15:90347675-90347922(-)$1	247	26	30	11.9999
CAGG	chr11:33731537-33731833(-)$1	296	170	174	11.9999
CAGG	chr11:1774686-1774920(-)$1	234	6	10	11.9999
CAGG	chr6:31911623-31911868(+)$1	245	38	42	11.9999
CAGG	chr2:27439622-27439914(+)$1	292	86	90	11.9999
CAGG	chr16:5125373-5125635(+)$1	262	22	26	11.9999
CAGG	chr7:75614275-75614531(+)$1	256	154	158	11.9999
CAGG	chr15:89450363-89450618(-)$1	255	137	141	11.9999
CAGG	chr11:1775218-1775432(-)$1	214	14	18	11.9999
CAGG	chr7:75608779-75608997(+)$1	218	165	169	11.9999
CAGG	chr9:124074516-124074740(+)$1	224	157	161	11.9999
CAGG	chr11:62396249-62396490(-)$1	241	218	222	11.9999
CAGG	chr17:6606192-6606488(-)$1	296	28	32	11.9999
CAGG	chr9:34636893-34637103(-)$1	210	14	18	11.9999
CAGG	chrX:153063753-153064009(+)$1	256	27	31	11.9999
CAGG	chr3:170715937-170716180(-)$1	243	68	72	11.9999
CAGG	chr11:130011713-130011961(+)$1	248	14	18	11.9999
CAGG	chr17:78187966-78188221(-)$1	255	91	95	11.9999
CAGG	chr17:27898953-27899176(+)$1	223	57	61	11.9999
CAGG	chr17:76968420-76968657(-)$1	237	50	54	11.9999
CAGG	chr19:40875964-40876223(+)$1	259	49	53	11.9999
CAGG	chr6:33740337-33740607(-)$1	270	23	27	11.9999
CAGG	chr1:165712387-165712646(-)$1	259	240	244	11.9999
CAGG	chr3:190025959-190026234(-)$1	275	19	23	11.9999
CAGG	chr6:31624191-31624438(+)$1	247	94	98	11.9999
CAGG	chr14:94770762-94771005(-)$1	243	7	11	11.9999
CAGG	chr6:31896510-31896734(+)$1	224	210	214	11.9999
CAGG	chr17:78185771-78186042(-)$1	271	66	70	11.9999
CAGG	chr10:33197195-33197415(-)$1	220	197	201	11.9999
CAGG	chr8:144102955-144103201(+)$1	246	24	28	11.9999
CAGG	chr17:40695339-40695618(+)$1	279	153	157	11.9999
CAGG	chr19:18287957-18288199(+)$1	242	11	15	11.9999
CAGG	chr11:62397849-62398074(-)$1	225	32	36	11.9999
CAGG	chr1:161192610-161192841(-)$1	231	18	22	11.9999
CAGG	chr17:1674310-1674566(+)$1	256	9	13	11.9999
CAGG	chr3:127783625-127783829(+)$1	204	91	95	11.9999
CAGG	chr2:162876648-162876886(-)$1	238	77	81	11.9999
CAGG	chr7:75609701-75609906(+)$1	205	45	49	11.9999
CAGG	chr6:43100259-43100522(+)$1	263	38	42	11.9999
CAGG	chr16:66974247-66974504(+)$1	257	8	12	11.9999
CAGG	chr13:113795213-113795434(+)$1	221	148	152	11.9999
CAGG	chr12:7177438-7177691(+)$1	253	101	105	11.9999
CAGG	chr3:133474106-133474310(+)$1	204	178	182	11.9999
CAGG	chr7:100780611-100780834(+)$1	223	71	75	11.9999

#otherMatches

#Struct PSSM
bccc	chr7:75615016-75615235(+)$1	219	123	127	11.9999
!!ii	chr6:31911593-31911800(+)$1	207	25	29	11.9999
eebb	chr6:31919559-31919805(+)$1	246	23	27	11.9999
ccc!	chr1:155112326-155112623(-)$1	297	9	13	11.9999
hhhh	chr17:76967768-76968017(-)$1	249	15	19	11.9999
mmmm	chr11:118923292-118923548(-)$1	256	197	201	11.9999
b[ee	chr17:76969143-76969402(-)$1	259	102	106	11.9999
ddd]	chr2:216229528-216229746(-)$1	218	161	165	11.9999
EEEE	chr6:31911092-31911351(+)$1	259	8	12	11.9999
EEEE	chr19:14676455-14676686(+)$1	231	17	21	11.9999
ppcc	chr9:117093806-117094022(+)$1	216	185	189	11.9999
JJ:a	chr1:201112868-201113157(-)$1	289	75	79	11.9999
E{CC	chr21:46914714-46914929(+)$1	215	20	24	11.9999
dddd	chr5:179135198-179135435(+)$1	237	80	84	11.9999
ffgg	chr11:118922536-118922762(-)$1	226	4	8	11.9999
a[cc	chr17:79803365-79803585(-)$1	220	142	146	11.9999
EEEE	chr6:31237642-31237858(-)$1	216	113	117	11.9999
oooe	chr9:101980832-101981117(-)$1	285	22	26	11.9999
ffff	chr14:75601492-75601759(-)$1	267	121	125	11.9999
::DD	chr17:46133837-46134058(+)$1	221	0	4	11.9999
ccc'	chr17:46133723-46133963(+)$1	240	21	25	11.9999
{CCC	chr19:11241855-11242102(+)$1	247	12	16	11.9999
HHHH	chr22:45937932-45938223(+)$1	291	217	221	11.9999
EKKC	chr5:151051047-151051343(-)$1	296	22	26	11.9999
rrrc	chr1:40554997-40555218(-)$1	221	58	62	11.9999
eeeq	chr19:19230694-19230957(-)$1	263	208	212	11.9999
KGGG	chr17:64224093-64224301(-)$1	208	50	54	11.9999
Feee	chr1:52489108-52489347(-)$1	239	33	37	11.9999
h[dd	chr2:128180407-128180617(+)$1	210	53	57	11.9999
KKDD	chr12:58109442-58109664(+)$1	222	119	123	11.9999
J:::	chr14:93170889-93171124(-)$1	235	137	141	11.9999
bb44	chr1:156263834-156264118(-)$1	284	44	48	11.9999
IIII	chr17:76968522-76968752(-)$1	230	44	48	11.9999
]ccc	chr17:76167529-76167813(+)$1	284	211	215	11.9999
HHHH	chr19:14676354-14676575(+)$1	221	13	17	11.9999
LLBB	chr17:26696427-26696637(-)$1	210	11	15	11.9999
CGGG	chr12:9310916-9311178(-)$1	262	37	41	11.9999
HHee	chr7:75609556-75609759(+)$1	203	12	16	11.9999
ffff	chr15:79219957-79220223(-)$1	266	97	101	11.9999
fa[d	chr9:124074630-124074855(+)$1	225	43	47	11.9999
f[ab	chr8:11703151-11703397(-)$1	246	96	100	11.9999
g!!c	chr11:118920196-118920414(-)$1	218	144	148	11.9999
::cc	chr12:50152120-50152360(+)$1	240	114	118	11.9999
&&&c	chr17:79817056-79817290(-)$1	234	112	116	11.9999
3ddd	chr7:56142176-56142457(+)$1	281	106	110	11.9999
cc[a	chr11:902861-903128(-)$1	267	209	213	11.9999
ffff	chr2:97400044-97400295(-)$1	251	59	63	11.9999
dddd	chr11:6638174-6638416(-)$1	242	88	92	11.9999
NNFF	chr21:46914368-46914585(+)$1	217	16	20	11.9999
ffff	chr15:90347675-90347922(-)$1	247	26	30	11.9999
JJJJ	chr11:33731537-33731833(-)$1	296	170	174	11.9999
c[cc	chr11:1774686-1774920(-)$1	234	6	10	11.9999
FKKB	chr6:31911623-31911868(+)$1	245	38	42	11.9999
cfff	chr2:27439622-27439914(+)$1	292	86	90	11.9999
dd[a	chr16:5125373-5125635(+)$1	262	22	26	11.9999
gggg	chr7:75614275-75614531(+)$1	256	154	158	11.9999
eeee	chr15:89450363-89450618(-)$1	255	137	141	11.9999
::bb	chr11:1775218-1775432(-)$1	214	14	18	11.9999
AYYC	chr7:75608779-75608997(+)$1	218	165	169	11.9999
cc[d	chr9:124074516-124074740(+)$1	224	157	161	11.9999
hh:G	chr11:62396249-62396490(-)$1	241	218	222	11.9999
FFFF	chr17:6606192-6606488(-)$1	296	28	32	11.9999
EEE{	chr9:34636893-34637103(-)$1	210	14	18	11.9999
hhhh	chrX:153063753-153064009(+)$1	256	27	31	11.9999
iiii	chr3:170715937-170716180(-)$1	243	68	72	11.9999
sssd	chr11:130011713-130011961(+)$1	248	14	18	11.9999
CCCc	chr17:78187966-78188221(-)$1	255	91	95	11.9999
IIII	chr17:27898953-27899176(+)$1	223	57	61	11.9999
eeee	chr17:76968420-76968657(-)$1	237	50	54	11.9999
dddd	chr19:40875964-40876223(+)$1	259	49	53	11.9999
cccc	chr6:33740337-33740607(-)$1	270	23	27	11.9999
eeed	chr1:165712387-165712646(-)$1	259	240	244	11.9999
iiis	chr3:190025959-190026234(-)$1	275	19	23	11.9999
f:FF	chr6:31624191-31624438(+)$1	247	94	98	11.9999
LLBB	chr14:94770762-94771005(-)$1	243	7	11	11.9999
c:JJ	chr6:31896510-31896734(+)$1	224	210	214	11.9999
eeee	chr17:78185771-78186042(-)$1	271	66	70	11.9999
}HHH	chr10:33197195-33197415(-)$1	220	197	201	11.9999
FFFF	chr8:144102955-144103201(+)$1	246	24	28	11.9999
BKKB	chr17:40695339-40695618(+)$1	279	153	157	11.9999
ee!!	chr19:18287957-18288199(+)$1	242	11	15	11.9999
&&&&	chr11:62397849-62398074(-)$1	225	32	36	11.9999
cccc	chr1:161192610-161192841(-)$1	231	18	22	11.9999
eeeb	chr17:1674310-1674566(+)$1	256	9	13	11.9999
qddd	chr3:127783625-127783829(+)$1	204	91	95	11.9999
00ee	chr2:162876648-162876886(-)$1	238	77	81	11.9999
eeeb	chr7:75609701-75609906(+)$1	205	45	49	11.9999
CKKA	chr6:43100259-43100522(+)$1	263	38	42	11.9999
dddd	chr16:66974247-66974504(+)$1	257	8	12	11.9999
dddd	chr13:113795213-113795434(+)$1	221	148	152	11.9999
leee	chr12:7177438-7177691(+)$1	253	101	105	11.9999
dfff	chr3:133474106-133474310(+)$1	204	178	182	11.9999
cc%%	chr7:100780611-100780834(+)$1	223	71	75	11.9999

#DB
))))	chr7:75615016-75615235(+)$1	1	123	127	11.9999
..((	chr6:31911593-31911800(+)$1	1	25	29	11.9999
((((	chr6:31919559-31919805(+)$1	1	23	27	11.9999
(((.	chr1:155112326-155112623(-)$1	1	9	13	11.9999
((((	chr17:76967768-76968017(-)$1	1	15	19	11.9999
....	chr11:118923292-118923548(-)$1	1	197	201	11.9999
(.((	chr17:76969143-76969402(-)$1	1	102	106	11.9999
))).	chr2:216229528-216229746(-)$1	1	161	165	11.9999
((((	chr6:31911092-31911351(+)$1	1	8	12	11.9999
((((	chr19:14676455-14676686(+)$1	1	17	21	11.9999
..))	chr9:117093806-117094022(+)$1	1	185	189	11.9999
((.(	chr1:201112868-201113157(-)$1	1	75	79	11.9999
(.((	chr21:46914714-46914929(+)$1	1	20	24	11.9999
((((	chr5:179135198-179135435(+)$1	1	80	84	11.9999
((((	chr11:118922536-118922762(-)$1	1	4	8	11.9999
(.((	chr17:79803365-79803585(-)$1	1	142	146	11.9999
))))	chr6:31237642-31237858(-)$1	1	113	117	11.9999
...)	chr9:101980832-101981117(-)$1	1	22	26	11.9999
((((	chr14:75601492-75601759(-)$1	1	121	125	11.9999
..((	chr17:46133837-46134058(+)$1	1	0	4	11.9999
(((.	chr17:46133723-46133963(+)$1	1	21	25	11.9999
.(((	chr19:11241855-11242102(+)$1	1	12	16	11.9999
))))	chr22:45937932-45938223(+)$1	1	217	221	11.9999
(..(	chr5:151051047-151051343(-)$1	1	22	26	11.9999
...)	chr1:40554997-40555218(-)$1	1	58	62	11.9999
(((.	chr19:19230694-19230957(-)$1	1	208	212	11.9999
.(((	chr17:64224093-64224301(-)$1	1	50	54	11.9999
((((	chr1:52489108-52489347(-)$1	1	33	37	11.9999
(.((	chr2:128180407-128180617(+)$1	1	53	57	11.9999
..((	chr12:58109442-58109664(+)$1	1	119	123	11.9999
)...	chr14:93170889-93171124(-)$1	1	137	141	11.9999
))..	chr1:156263834-156264118(-)$1	1	44	48	11.9999
((((	chr17:76968522-76968752(-)$1	1	44	48	11.9999
.)))	chr17:76167529-76167813(+)$1	1	211	215	11.9999
((((	chr19:14676354-14676575(+)$1	1	13	17	11.9999
..((	chr17:26696427-26696637(-)$1	1	11	15	11.9999
((((	chr12:9310916-9311178(-)$1	1	37	41	11.9999
((((	chr7:75609556-75609759(+)$1	1	12	16	11.9999
((((	chr15:79219957-79220223(-)$1	1	97	101	11.9999
)(.(	chr9:124074630-124074855(+)$1	1	43	47	11.9999
(.((	chr8:11703151-11703397(-)$1	1	96	100	11.9999
(..(	chr11:118920196-118920414(-)$1	1	144	148	11.9999
..((	chr12:50152120-50152360(+)$1	1	114	118	11.9999
...(	chr17:79817056-79817290(-)$1	1	112	116	11.9999
.)))	chr7:56142176-56142457(+)$1	1	106	110	11.9999
((.(	chr11:902861-903128(-)$1	1	209	213	11.9999
((((	chr2:97400044-97400295(-)$1	1	59	63	11.9999
))))	chr11:6638174-6638416(-)$1	1	88	92	11.9999
..((	chr21:46914368-46914585(+)$1	1	16	20	11.9999
))))	chr15:90347675-90347922(-)$1	1	26	30	11.9999
))))	chr11:33731537-33731833(-)$1	1	170	174	11.9999
(.((	chr11:1774686-1774920(-)$1	1	6	10	11.9999
(..(	chr6:31911623-31911868(+)$1	1	38	42	11.9999
))))	chr2:27439622-27439914(+)$1	1	86	90	11.9999
((.(	chr16:5125373-5125635(+)$1	1	22	26	11.9999
((((	chr7:75614275-75614531(+)$1	1	154	158	11.9999
))))	chr15:89450363-89450618(-)$1	1	137	141	11.9999
..((	chr11:1775218-1775432(-)$1	1	14	18	11.9999
)..)	chr7:75608779-75608997(+)$1	1	165	169	11.9999
((.(	chr9:124074516-124074740(+)$1	1	157	161	11.9999
)).)	chr11:62396249-62396490(-)$1	1	218	222	11.9999
((((	chr17:6606192-6606488(-)$1	1	28	32	11.9999
(((.	chr9:34636893-34637103(-)$1	1	14	18	11.9999
((((	chrX:153063753-153064009(+)$1	1	27	31	11.9999
((((	chr3:170715937-170716180(-)$1	1	68	72	11.9999
...)	chr11:130011713-130011961(+)$1	1	14	18	11.9999
((((	chr17:78187966-78188221(-)$1	1	91	95	11.9999
((((	chr17:27898953-27899176(+)$1	1	57	61	11.9999
((((	chr17:76968420-76968657(-)$1	1	50	54	11.9999
))))	chr19:40875964-40876223(+)$1	1	49	53	11.9999
))))	chr6:33740337-33740607(-)$1	1	23	27	11.9999
)))(	chr1:165712387-165712646(-)$1	1	240	244	11.9999
(((.	chr3:190025959-190026234(-)$1	1	19	23	11.9999
).((	chr6:31624191-31624438(+)$1	1	94	98	11.9999
..((	chr14:94770762-94771005(-)$1	1	7	11	11.9999
).))	chr6:31896510-31896734(+)$1	1	210	214	11.9999
((((	chr17:78185771-78186042(-)$1	1	66	70	11.9999
.)))	chr10:33197195-33197415(-)$1	1	197	201	11.9999
((((	chr8:144102955-144103201(+)$1	1	24	28	11.9999
(..(	chr17:40695339-40695618(+)$1	1	153	157	11.9999
((..	chr19:18287957-18288199(+)$1	1	11	15	11.9999
....	chr11:62397849-62398074(-)$1	1	32	36	11.9999
((((	chr1:161192610-161192841(-)$1	1	18	22	11.9999
((((	chr17:1674310-1674566(+)$1	1	9	13	11.9999
.)))	chr3:127783625-127783829(+)$1	1	91	95	11.9999
..))	chr2:162876648-162876886(-)$1	1	77	81	11.9999
((((	chr7:75609701-75609906(+)$1	1	45	49	11.9999
(..(	chr6:43100259-43100522(+)$1	1	38	42	11.9999
((((	chr16:66974247-66974504(+)$1	1	8	12	11.9999
))))	chr13:113795213-113795434(+)$1	1	148	152	11.9999
.)))	chr12:7177438-7177691(+)$1	1	101	105	11.9999
)(((	chr3:133474106-133474310(+)$1	1	178	182	11.9999
((..	chr7:100780611-100780834(+)$1	1	71	75	11.9999

#PSSM
C : 0.99	
A : 0.99	
G : 0.99	
G : 0.99	

#score	1115.9999999999998
#seq	93
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_UTR_m2_run2.nuc.txt

#NT
AGGAA	chr18:9255370-9255620(+)$1	250	104	109	15.0000
aggaa	chr10:43084679-43085048(-)$1	369	2	7	15.0000
AGGAA	chr1:203768330-203768590(+)$1	260	147	152	15.0000
AGGAA	chr6:111695121-111695407(-)$1	286	198	203	15.0000
AGGAA	chr3:178976754-178977029(-)$1	275	76	81	15.0000
AGGAA	chr2:109088096-109088376(+)$1	280	72	77	15.0000
AGGAA	chr10:38407909-38408195(+)$1	286	3	8	15.0000
AGGAA	chr18:9255272-9255515(+)$1	243	225	230	15.0000
aggaa	chr10:38410483-38410729(+)$1	246	96	101	15.0000
aggaa	chr6:146228901-146229180(-)$1	279	13	18	15.0000
aggaa	chr14:58755415-58755750(-)$1	335	67	72	15.0000
aggaa	chr14:76672762-76673016(+)$1	254	211	216	15.0000
AGGAA	chr1:46073041-46073268(+)$1	227	128	133	15.0000
AGGAA	chr21:39469438-39469708(-)$1	270	137	142	15.0000
AGGAA	chr21:39469377-39469638(-)$1	261	67	72	15.0000
AGGAA	chr17:41246386-41246669(-)$1	283	95	100	15.0000
AGGAA	chr15:40914836-40915095(+)$1	259	144	149	15.0000
AGGAA	chr1:92853100-92853521(+)$1	421	155	160	15.0000
aggaa	chr10:38410951-38411223(+)$1	272	214	219	15.0000
AGGAA	chr15:40914727-40914956(+)$1	229	4	9	15.0000
AGGAA	chr6:64422239-64422514(+)$1	275	37	42	15.0000
AGGAA	chr18:9254776-9255038(+)$1	262	52	57	15.0000
AGGAA	chr2:109087823-109088099(+)$1	276	36	41	15.0000
aggaa	chr7:43671603-43671844(-)$1	241	195	200	15.0000
AGGAA	chr1:46073068-46073296(+)$1	228	101	106	15.0000
AGGAA	chr4:761223-761500(-)$1	277	127	132	15.0000
aggaa	chr8:91018065-91018366(+)$1	301	71	76	15.0000
AGGAA	chr17:41245151-41245403(-)$1	252	194	199	15.0000
AGGAA	chr3:121414284-121414551(-)$1	267	190	195	15.0000
aggaa	chr7:43671845-43672106(-)$1	261	147	152	15.0000
AGGAA	chr2:109087048-109087306(+)$1	258	25	30	15.0000
AGGAA	chr1:203769306-203769566(+)$1	260	11	16	15.0000
AGGAA	chr4:760050-760303(-)$1	253	16	21	15.0000
AGGAA	chr7:5105407-5105668(+)$1	261	216	221	15.0000
AGGAA	chr19:11892263-11892581(+)$1	318	228	233	15.0000
AGGAA	chr1:203766418-203766703(+)$1	285	157	162	15.0000
aggaa	chr3:40577141-40577408(+)$1	267	196	201	15.0000
AGGAA	chr15:40915230-40915535(+)$1	305	131	136	15.0000
AGGAA	chr6:111694880-111695209(-)$1	329	0	5	15.0000
AGGAA	chr19:40539816-40540129(-)$1	313	132	137	15.0000
AGGAA	chr1:46072982-46073241(+)$1	259	10	15	15.0000
AGGAA	chr1:155451089-155451325(-)$1	236	4	9	15.0000
AGGAA	chrX:106309747-106310031(-)$1	284	4	9	15.0000
AGGAA	chr3:15084401-15084659(-)$1	258	30	35	15.0000
AGGAA	chr4:1229121-1229435(-)$1	314	175	180	15.0000
AGGAA	chr15:40913962-40914228(+)$1	266	245	250	15.0000
AGGAA	chr13:108518857-108519174(-)$1	317	136	141	15.0000
AGGAA	chr1:155451356-155451640(-)$1	284	5	10	15.0000
AGGAA	chr17:58326922-58327203(-)$1	281	265	270	15.0000
AGGAA	chr15:40913510-40913771(+)$1	261	25	30	15.0000
AGGAA	chr3:121415970-121416260(-)$1	290	134	139	15.0000
AGGAA	chr15:40913089-40913334(+)$1	245	44	49	15.0000
AGGAA	chr4:761155-761423(-)$1	268	50	55	15.0000
aggaa	chr7:43671774-43672045(-)$1	271	86	91	15.0000
AGGAA	chr6:3270301-3270562(+)$1	261	178	183	15.0000
AGGAA	chr2:109086566-109086892(+)$1	326	9	14	15.0000
AGGAA	chr4:761642-761885(-)$1	243	144	149	15.0000
aggaa	chr10:38411874-38412224(+)$1	350	72	77	15.0000
AGGAA	chr5:112177766-112178081(+)$1	315	82	87	15.0000
AGGAA	chr17:41245419-41245721(-)$1	302	10	15	15.0000
AGGAA	chr15:40914895-40915219(+)$1	324	85	90	15.0000
AGGAA	chrX:106309991-106310251(-)$1	260	224	229	15.0000
aggaa	chrX:106307587-106307921(-)$1	334	224	229	15.0000
AGGAA	chr16:24801068-24801351(+)$1	283	165	170	15.0000
aggaa	chr17:43225832-43226100(+)$1	268	103	108	15.0000
AGGAA	chr17:41243693-41243933(-)$1	240	227	232	15.0000

#otherMatches

#Struct PSSM
:::::	chr18:9254687-9254947(+)$1	260	52	57	15.0000
eeee4	chr18:9255370-9255620(+)$1	250	104	109	15.0000
dddll	chr10:43084679-43085048(-)$1	369	2	7	15.0000
hhhhh	chr1:203768330-203768590(+)$1	260	147	152	15.0000
fffff	chr6:111695121-111695407(-)$1	286	198	203	15.0000
66666	chr3:178976754-178977029(-)$1	275	76	81	15.0000
dddd5	chr2:109088096-109088376(+)$1	280	72	77	15.0000
CCCPP	chr10:38407909-38408195(+)$1	286	3	8	15.0000
hh::E	chr18:9255272-9255515(+)$1	243	225	230	15.0000
e4444	chr10:38410483-38410729(+)$1	246	96	101	15.0000
DD{II	chr6:146228901-146229180(-)$1	279	13	18	15.0000
2bb]d	chr14:58755415-58755750(-)$1	335	67	72	15.0000
55555	chr14:76672762-76673016(+)$1	254	211	216	15.0000
00000	chr1:46073041-46073268(+)$1	227	128	133	15.0000
eeee[	chr21:39469438-39469708(-)$1	270	137	142	15.0000
eeee[	chr21:39469377-39469638(-)$1	261	67	72	15.0000
!a###	chr17:41246386-41246669(-)$1	283	95	100	15.0000
h%%%%	chr15:40914836-40915095(+)$1	259	144	149	15.0000
GG:::	chr1:92853100-92853521(+)$1	421	155	160	15.0000
obb::	chr10:38410951-38411223(+)$1	272	214	219	15.0000
:::::	chr15:40914727-40914956(+)$1	229	4	9	15.0000
:::::	chr6:64422239-64422514(+)$1	275	37	42	15.0000
cccmm	chr18:9254776-9255038(+)$1	262	52	57	15.0000
dduuu	chr2:109087823-109088099(+)$1	276	36	41	15.0000
]eeee	chr7:43671603-43671844(-)$1	241	195	200	15.0000
00000	chr1:46073068-46073296(+)$1	228	101	106	15.0000
iiiii	chr4:761223-761500(-)$1	277	127	132	15.0000
[a[gg	chr8:91018065-91018366(+)$1	301	71	76	15.0000
dd:::	chr17:41245151-41245403(-)$1	252	194	199	15.0000
ooooe	chr3:121414284-121414551(-)$1	267	190	195	15.0000
bbppp	chr7:43671845-43672106(-)$1	261	147	152	15.0000
""bbo	chr2:109087048-109087306(+)$1	258	25	30	15.0000
####e	chr1:203769306-203769566(+)$1	260	11	16	15.0000
DDD:c	chr4:760050-760303(-)$1	253	16	21	15.0000
gg]bb	chr7:5105407-5105668(+)$1	261	216	221	15.0000
ttttc	chr19:11892263-11892581(+)$1	318	228	233	15.0000
fffff	chr1:203766418-203766703(+)$1	285	157	162	15.0000
g:ddd	chr3:40577141-40577408(+)$1	267	196	201	15.0000
OHHHH	chr15:40915230-40915535(+)$1	305	131	136	15.0000
:CCC:	chr6:111694880-111695209(-)$1	329	0	5	15.0000
:CCC}	chr19:40539816-40540129(-)$1	313	132	137	15.0000
ppppp	chr1:46072982-46073241(+)$1	259	10	15	15.0000
eee##	chr1:155451089-155451325(-)$1	236	4	9	15.0000
bb[cc	chrX:106309747-106310031(-)$1	284	4	9	15.0000
CCA{H	chr3:15084401-15084659(-)$1	258	30	35	15.0000
vvvvv	chr4:1229121-1229435(-)$1	314	175	180	15.0000
:dddd	chr15:40913962-40914228(+)$1	266	245	250	15.0000
cnnnn	chr13:108518857-108519174(-)$1	317	136	141	15.0000
ff+++	chr1:155451356-155451640(-)$1	284	5	10	15.0000
::JJJ	chr17:58326922-58327203(-)$1	281	265	270	15.0000
bb:::	chr15:40913510-40913771(+)$1	261	25	30	15.0000
:::::	chr3:121415970-121416260(-)$1	290	134	139	15.0000
hhhhh	chr15:40913089-40913334(+)$1	245	44	49	15.0000
iiiii	chr4:761155-761423(-)$1	268	50	55	15.0000
e::::	chr7:43671774-43672045(-)$1	271	86	91	15.0000
:::::	chr6:3270301-3270562(+)$1	261	178	183	15.0000
ttttt	chr2:109086566-109086892(+)$1	326	9	14	15.0000
qdddd	chr4:761642-761885(-)$1	243	144	149	15.0000
ddd[d	chr10:38411874-38412224(+)$1	350	72	77	15.0000
66666	chr5:112177766-112178081(+)$1	315	82	87	15.0000
eeemm	chr17:41245419-41245721(-)$1	302	10	15	15.0000
h%%%%	chr15:40914895-40915219(+)$1	324	85	90	15.0000
FFFFF	chrX:106309991-106310251(-)$1	260	224	229	15.0000
hhhhh	chrX:106307587-106307921(-)$1	334	224	229	15.0000
ggg::	chr16:24801068-24801351(+)$1	283	165	170	15.0000
c++++	chr17:43225832-43226100(+)$1	268	103	108	15.0000
cccpp	chr17:41243693-41243933(-)$1	240	227	232	15.0000

#DB
.....	chr18:9254687-9254947(+)$1	1	52	57	15.0000
)))).	chr18:9255370-9255620(+)$1	1	104	109	15.0000
(((..	chr10:43084679-43085048(-)$1	1	2	7	15.0000
)))))	chr1:203768330-203768590(+)$1	1	147	152	15.0000
(((((	chr6:111695121-111695407(-)$1	1	198	203	15.0000
.....	chr3:178976754-178977029(-)$1	1	76	81	15.0000
)))).	chr2:109088096-109088376(+)$1	1	72	77	15.0000
(((..	chr10:38407909-38408195(+)$1	1	3	8	15.0000
))..)	chr18:9255272-9255515(+)$1	1	225	230	15.0000
)....	chr10:38410483-38410729(+)$1	1	96	101	15.0000
((.((	chr6:146228901-146229180(-)$1	1	13	18	15.0000
.)).)	chr14:58755415-58755750(-)$1	1	67	72	15.0000
.....	chr14:76672762-76673016(+)$1	1	211	216	15.0000
.....	chr1:46073041-46073268(+)$1	1	128	133	15.0000
((((.	chr21:39469438-39469708(-)$1	1	137	142	15.0000
((((.	chr21:39469377-39469638(-)$1	1	67	72	15.0000
.(...	chr17:41246386-41246669(-)$1	1	95	100	15.0000
(....	chr15:40914836-40915095(+)$1	1	144	149	15.0000
((...	chr1:92853100-92853521(+)$1	1	155	160	15.0000
.))..	chr10:38410951-38411223(+)$1	1	214	219	15.0000
.....	chr15:40914727-40914956(+)$1	1	4	9	15.0000
.....	chr6:64422239-64422514(+)$1	1	37	42	15.0000
(((..	chr18:9254776-9255038(+)$1	1	52	57	15.0000
((...	chr2:109087823-109088099(+)$1	1	36	41	15.0000
.))))	chr7:43671603-43671844(-)$1	1	195	200	15.0000
.....	chr1:46073068-46073296(+)$1	1	101	106	15.0000
)))))	chr4:761223-761500(-)$1	1	127	132	15.0000
.(.((	chr8:91018065-91018366(+)$1	1	71	76	15.0000
))...	chr17:41245151-41245403(-)$1	1	194	199	15.0000
....)	chr3:121414284-121414551(-)$1	1	190	195	15.0000
((...	chr7:43671845-43672106(-)$1	1	147	152	15.0000
..((.	chr2:109087048-109087306(+)$1	1	25	30	15.0000
....(	chr1:203769306-203769566(+)$1	1	11	16	15.0000
(((.(	chr4:760050-760303(-)$1	1	16	21	15.0000
)).))	chr7:5105407-5105668(+)$1	1	216	221	15.0000
....)	chr19:11892263-11892581(+)$1	1	228	233	15.0000
)))))	chr1:203766418-203766703(+)$1	1	157	162	15.0000
).(((	chr3:40577141-40577408(+)$1	1	196	201	15.0000
.((((	chr15:40915230-40915535(+)$1	1	131	136	15.0000
.(((.	chr6:111694880-111695209(-)$1	1	0	5	15.0000
.))).	chr19:40539816-40540129(-)$1	1	132	137	15.0000
.....	chr1:46072982-46073241(+)$1	1	10	15	15.0000
(((..	chr1:155451089-155451325(-)$1	1	4	9	15.0000
((.((	chrX:106309747-106310031(-)$1	1	4	9	15.0000
(((.(	chr3:15084401-15084659(-)$1	1	30	35	15.0000
.....	chr4:1229121-1229435(-)$1	1	175	180	15.0000
.((((	chr15:40913962-40914228(+)$1	1	245	250	15.0000
(....	chr13:108518857-108519174(-)$1	1	136	141	15.0000
((...	chr1:155451356-155451640(-)$1	1	5	10	15.0000
..)))	chr17:58326922-58327203(-)$1	1	265	270	15.0000
))...	chr15:40913510-40913771(+)$1	1	25	30	15.0000
.....	chr3:121415970-121416260(-)$1	1	134	139	15.0000
(((((	chr15:40913089-40913334(+)$1	1	44	49	15.0000
)))))	chr4:761155-761423(-)$1	1	50	55	15.0000
)....	chr7:43671774-43672045(-)$1	1	86	91	15.0000
.....	chr6:3270301-3270562(+)$1	1	178	183	15.0000
.....	chr2:109086566-109086892(+)$1	1	9	14	15.0000
.))))	chr4:761642-761885(-)$1	1	144	149	15.0000
(((.(	chr10:38411874-38412224(+)$1	1	72	77	15.0000
.....	chr5:112177766-112178081(+)$1	1	82	87	15.0000
(((..	chr17:41245419-41245721(-)$1	1	10	15	15.0000
(....	chr15:40914895-40915219(+)$1	1	85	90	15.0000
)))))	chrX:106309991-106310251(-)$1	1	224	229	15.0000
)))))	chrX:106307587-106307921(-)$1	1	224	229	15.0000
)))..	chr16:24801068-24801351(+)$1	1	165	170	15.0000
(....	chr17:43225832-43226100(+)$1	1	103	108	15.0000
(((..	chr17:41243693-41243933(-)$1	1	227	232	15.0000

#PSSM
A : 0.77	a : 0.22	
G : 0.77	g : 0.22	
G : 0.77	g : 0.22	
A : 0.77	a : 0.22	
A : 0.77	a : 0.22	

#score	1005.0000000000001
#seq	67
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_CDS_m3_run1.nuc.txt

#NT
AAGA	chr17:34942442-34942724(+)$1	282	1	5	12.0000
AAGA	chr2:99988018-99988241(+)$1	223	43	47	12.0000
AAGA	chr1:186308742-186308976(-)$1	234	91	95	12.0000
AAGA	chr7:104783507-104783753(-)$1	246	0	4	12.0000
AAGA	chr3:160133982-160134251(+)$1	269	19	23	12.0000
AAGA	chr3:112260549-112260832(-)$1	283	117	121	12.0000
aaga	chr9:131456077-131456288(+)$1	211	116	120	12.0000
AAGA	chr9:15471083-15471432(-)$1	349	277	281	12.0000
AAGA	chr20:60711811-60712107(-)$1	296	39	43	12.0000
AAGA	chr1:214813163-214813427(+)$1	264	102	106	12.0000
AAGA	chr5:145850113-145850406(+)$1	293	94	98	12.0000
AAGA	chr5:37396483-37396776(+)$1	293	103	107	12.0000
AAGA	chr20:39713035-39713295(+)$1	260	87	91	12.0000
aaga	chr6:31857143-31857449(-)$1	306	104	108	12.0000
AAGA	chr9:100774627-100774854(+)$1	227	76	80	12.0000
AAGA	chr12:6711026-6711303(-)$1	277	29	33	12.0000
AAGA	chr2:232326468-232326749(-)$1	281	36	40	12.0000
AAGA	chr2:170668075-170668376(+)$1	301	112	116	12.0000
AAGA	chr21:33979856-33980081(-)$1	225	1	5	12.0000
AAGA	chr2:47388759-47389003(-)$1	244	79	83	12.0000
aaga	chr5:39137601-39137935(-)$1	334	124	128	12.0000
AAGA	chr7:72892494-72892744(-)$1	250	13	17	12.0000
AAGA	chr20:13756481-13756854(-)$1	373	7	11	12.0000
AAGA	chr15:69072697-69072912(-)$1	215	107	111	12.0000
AAGA	chr2:128255637-128255914(-)$1	277	44	48	12.0000
AAGa	chr6:18236634-18236900(-)$1	266	37	41	12.0000
AAGA	chr15:44106651-44106987(-)$1	336	156	160	12.0000
AAGA	chr18:55282772-55282994(-)$1	222	36	40	12.0000
aaga	chr11:35684969-35685315(+)$1	346	15	19	12.0000
AAGA	chr2:187359933-187360161(+)$1	228	44	48	12.0000
AAGA	chr12:57106185-57106436(-)$1	251	30	34	12.0000
AAGA	chr1:43629939-43630259(-)$1	320	95	99	12.0000
AAGA	chr2:232325172-232325375(-)$1	203	109	113	12.0000
AAGA	chr19:14200024-14200274(-)$1	250	110	114	12.0000
AAGA	chr7:104783553-104783821(-)$1	268	7	11	12.0000
aaga	chr6:44218102-44218332(+)$1	230	1	5	12.0000
AAGA	chr19:8530127-8530394(+)$1	267	241	245	12.0000
aaga	chr7:128434301-128434581(+)$1	280	133	137	12.0000
AAGA	chr2:37316747-37317082(+)$1	335	37	41	12.0000
AAGA	chr20:17922839-17923115(-)$1	276	103	107	12.0000
AAGA	chr2:187359869-187360133(+)$1	264	61	65	12.0000
AAGA	chr20:39709719-39709981(+)$1	262	6	10	12.0000
AAGA	chr9:131456819-131457021(+)$1	202	72	76	12.0000
aaga	chr1:52305947-52306221(-)$1	274	124	128	12.0000
AAGA	chr3:25653920-25654194(-)$1	274	7	11	12.0000
AAGA	chr12:46355424-46355741(-)$1	317	47	51	12.0000
AAGA	chr6:18236587-18236834(-)$1	247	53	57	12.0000
AAGA	chr2:232326624-232326828(-)$1	204	115	119	12.0000
aaga	chr9:100777550-100777778(+)$1	228	101	105	12.0000
AAGA	chr1:35853013-35853309(+)$1	296	65	69	12.0000
AAGA	chr20:31024532-31024807(+)$1	275	43	47	12.0000
AAGA	chr10:103558740-103559050(-)$1	310	3	7	12.0000
AAGA	chr1:214787036-214787356(+)$1	320	45	49	12.0000
aaga	chr6:44217948-44218172(+)$1	224	125	129	12.0000
AAGA	chr7:102952595-102952902(+)$1	307	136	140	12.0000
AAGA	chr3:37366602-37366869(+)$1	267	9	13	12.0000
aaga	chr1:16891197-16891510(-)$1	313	105	109	12.0000
aaga	chr15:50773906-50774218(+)$1	312	12	16	12.0000
AAGA	chr1:28536386-28536653(-)$1	267	117	121	12.0000
AAGA	chr2:99980633-99980866(+)$1	233	8	12	12.0000
AAGA	chr18:9516857-9517167(+)$1	310	9	13	12.0000
aaga	chr9:131456217-131456421(+)$1	204	12	16	12.0000
AAGA	chr13:111545288-111545560(-)$1	272	6	10	12.0000
AAGA	chr4:4276097-4276379(-)$1	282	6	10	12.0000
AAGA	chr1:70716374-70716641(+)$1	267	53	57	12.0000
AAGA	chr20:39713095-39713309(+)$1	214	27	31	12.0000
AAGA	chr15:41756868-41757179(+)$1	311	110	114	12.0000
AAGA	chr1:205698627-205698849(-)$1	222	23	27	12.0000
AAGA	chr6:153292187-153292496(-)$1	309	104	108	12.0000
AAGA	chr8:117861137-117861371(-)$1	234	107	111	12.0000
AAGA	chr12:76449711-76449942(-)$1	231	11	15	12.0000
aaga	chr1:52305876-52306147(-)$1	271	50	54	12.0000
AAGA	chr8:30938502-30938835(+)$1	333	2	6	12.0000
AAGA	chr4:666991-667205(-)$1	214	36	40	12.0000
AAGA	chr15:44107043-44107297(-)$1	254	114	118	12.0000
AAGA	chr7:139102179-139102439(+)$1	260	4	8	12.0000
AAGA	chr1:70611237-70611618(-)$1	381	331	335	12.0000
AAGA	chr12:6879227-6879439(+)$1	212	9	13	12.0000
AAGA	chr3:167437748-167438081(-)$1	333	60	64	12.0000
AAGA	chr9:100774604-100774817(+)$1	213	99	103	12.0000

#otherMatches

#Struct PSSM
cooo	chr2:232327810-232328013(-)$1	203	10	14	12.0000
::::	chr17:34942442-34942724(+)$1	282	1	5	12.0000
OOOO	chr2:99988018-99988241(+)$1	223	43	47	12.0000
hh::	chr1:186308742-186308976(-)$1	234	91	95	12.0000
::::	chr7:104783507-104783753(-)$1	246	0	4	12.0000
mmmd	chr3:160133982-160134251(+)$1	269	19	23	12.0000
e"""	chr3:112260549-112260832(-)$1	283	117	121	12.0000
====	chr9:131456077-131456288(+)$1	211	116	120	12.0000
JJJJ	chr9:15471083-15471432(-)$1	349	277	281	12.0000
ppff	chr20:60711811-60712107(-)$1	296	39	43	12.0000
eeee	chr1:214813163-214813427(+)$1	264	102	106	12.0000
33ii	chr5:145850113-145850406(+)$1	293	94	98	12.0000
ffff	chr5:37396483-37396776(+)$1	293	103	107	12.0000
44==	chr20:39713035-39713295(+)$1	260	87	91	12.0000
b333	chr6:31857143-31857449(-)$1	306	104	108	12.0000
ccct	chr9:100774627-100774854(+)$1	227	76	80	12.0000
LLFF	chr12:6711026-6711303(-)$1	277	29	33	12.0000
dd::	chr2:232326468-232326749(-)$1	281	36	40	12.0000
GGGG	chr2:170668075-170668376(+)$1	301	112	116	12.0000
:FFF	chr21:33979856-33980081(-)$1	225	1	5	12.0000
22ff	chr2:47388759-47389003(-)$1	244	79	83	12.0000
^^^^	chr5:39137601-39137935(-)$1	334	124	128	12.0000
::::	chr7:72892494-72892744(-)$1	250	13	17	12.0000
!!ee	chr20:13756481-13756854(-)$1	373	7	11	12.0000
ddd>	chr15:69072697-69072912(-)$1	215	107	111	12.0000
d!!c	chr2:128255637-128255914(-)$1	277	44	48	12.0000
nbb2	chr6:18236634-18236900(-)$1	266	37	41	12.0000
====	chr15:44106651-44106987(-)$1	336	156	160	12.0000
ddd]	chr18:55282772-55282994(-)$1	222	36	40	12.0000
KKEE	chr11:35684969-35685315(+)$1	346	15	19	12.0000
5555	chr2:187359933-187360161(+)$1	228	44	48	12.0000
EEEE	chr12:57106185-57106436(-)$1	251	30	34	12.0000
hhhh	chr1:43629939-43630259(-)$1	320	95	99	12.0000
nbb2	chr2:232325172-232325375(-)$1	203	109	113	12.0000
e]ee	chr19:14200024-14200274(-)$1	250	110	114	12.0000
nndd	chr7:104783553-104783821(-)$1	268	7	11	12.0000
::::	chr6:44218102-44218332(+)$1	230	1	5	12.0000
lbb]	chr19:8530127-8530394(+)$1	267	241	245	12.0000
::::	chr7:128434301-128434581(+)$1	280	133	137	12.0000
pppp	chr2:37316747-37317082(+)$1	335	37	41	12.0000
::::	chr20:17922839-17923115(-)$1	276	103	107	12.0000
::cc	chr2:187359869-187360133(+)$1	264	61	65	12.0000
::::	chr20:39709719-39709981(+)$1	262	6	10	12.0000
]eee	chr9:131456819-131457021(+)$1	202	72	76	12.0000
::::	chr1:52305947-52306221(-)$1	274	124	128	12.0000
DDKK	chr3:25653920-25654194(-)$1	274	7	11	12.0000
::BB	chr12:46355424-46355741(-)$1	317	47	51	12.0000
[bbp	chr6:18236587-18236834(-)$1	247	53	57	12.0000
ddee	chr2:232326624-232326828(-)$1	204	115	119	12.0000
b333	chr9:100777550-100777778(+)$1	228	101	105	12.0000
eeee	chr1:35853013-35853309(+)$1	296	65	69	12.0000
HHHH	chr20:31024532-31024807(+)$1	275	43	47	12.0000
::::	chr10:103558740-103559050(-)$1	310	3	7	12.0000
e333	chr1:214787036-214787356(+)$1	320	45	49	12.0000
a666	chr6:44217948-44218172(+)$1	224	125	129	12.0000
eeem	chr7:102952595-102952902(+)$1	307	136	140	12.0000
:a[d	chr3:37366602-37366869(+)$1	267	9	13	12.0000
::::	chr1:16891197-16891510(-)$1	313	105	109	12.0000
LEEE	chr15:50773906-50774218(+)$1	312	12	16	12.0000
::::	chr1:28536386-28536653(-)$1	267	117	121	12.0000
::A{	chr2:99980633-99980866(+)$1	233	8	12	12.0000
:BB{	chr18:9516857-9517167(+)$1	310	9	13	12.0000
::::	chr9:131456217-131456421(+)$1	204	12	16	12.0000
CCC{	chr13:111545288-111545560(-)$1	272	6	10	12.0000
::::	chr4:4276097-4276379(-)$1	282	6	10	12.0000
e:::	chr1:70716374-70716641(+)$1	267	53	57	12.0000
::::	chr20:39713095-39713309(+)$1	214	27	31	12.0000
:bbo	chr15:41756868-41757179(+)$1	311	110	114	12.0000
ffff	chr1:205698627-205698849(-)$1	222	23	27	12.0000
3ddd	chr6:153292187-153292496(-)$1	309	104	108	12.0000
====	chr8:117861137-117861371(-)$1	234	107	111	12.0000
:EEE	chr12:76449711-76449942(-)$1	231	11	15	12.0000
DUUU	chr1:52305876-52306147(-)$1	271	50	54	12.0000
:GGG	chr8:30938502-30938835(+)$1	333	2	6	12.0000
e"""	chr4:666991-667205(-)$1	214	36	40	12.0000
tttt	chr15:44107043-44107297(-)$1	254	114	118	12.0000
::::	chr7:139102179-139102439(+)$1	260	4	8	12.0000
::CC	chr1:70611237-70611618(-)$1	381	331	335	12.0000
!bb[	chr12:6879227-6879439(+)$1	212	9	13	12.0000
gggg	chr3:167437748-167438081(-)$1	333	60	64	12.0000
nnff	chr9:100774604-100774817(+)$1	213	99	103	12.0000

#DB
(...	chr2:232327810-232328013(-)$1	1	10	14	12.0000
....	chr17:34942442-34942724(+)$1	1	1	5	12.0000
....	chr2:99988018-99988241(+)$1	1	43	47	12.0000
))..	chr1:186308742-186308976(-)$1	1	91	95	12.0000
....	chr7:104783507-104783753(-)$1	1	0	4	12.0000
...)	chr3:160133982-160134251(+)$1	1	19	23	12.0000
(...	chr3:112260549-112260832(-)$1	1	117	121	12.0000
))))	chr9:131456077-131456288(+)$1	1	116	120	12.0000
))))	chr9:15471083-15471432(-)$1	1	277	281	12.0000
..))	chr20:60711811-60712107(-)$1	1	39	43	12.0000
((((	chr1:214813163-214813427(+)$1	1	102	106	12.0000
..))	chr5:145850113-145850406(+)$1	1	94	98	12.0000
))))	chr5:37396483-37396776(+)$1	1	103	107	12.0000
..))	chr20:39713035-39713295(+)$1	1	87	91	12.0000
)...	chr6:31857143-31857449(-)$1	1	104	108	12.0000
(((.	chr9:100774627-100774854(+)$1	1	76	80	12.0000
..((	chr12:6711026-6711303(-)$1	1	29	33	12.0000
))..	chr2:232326468-232326749(-)$1	1	36	40	12.0000
))))	chr2:170668075-170668376(+)$1	1	112	116	12.0000
.(((	chr21:33979856-33980081(-)$1	1	1	5	12.0000
..))	chr2:47388759-47389003(-)$1	1	79	83	12.0000
....	chr5:39137601-39137935(-)$1	1	124	128	12.0000
....	chr7:72892494-72892744(-)$1	1	13	17	12.0000
..((	chr20:13756481-13756854(-)$1	1	7	11	12.0000
))).	chr15:69072697-69072912(-)$1	1	107	111	12.0000
(..(	chr2:128255637-128255914(-)$1	1	44	48	12.0000
.)).	chr6:18236634-18236900(-)$1	1	37	41	12.0000
))))	chr15:44106651-44106987(-)$1	1	156	160	12.0000
))).	chr18:55282772-55282994(-)$1	1	36	40	12.0000
..((	chr11:35684969-35685315(+)$1	1	15	19	12.0000
....	chr2:187359933-187360161(+)$1	1	44	48	12.0000
((((	chr12:57106185-57106436(-)$1	1	30	34	12.0000
))))	chr1:43629939-43630259(-)$1	1	95	99	12.0000
.)).	chr2:232325172-232325375(-)$1	1	109	113	12.0000
).))	chr19:14200024-14200274(-)$1	1	110	114	12.0000
..))	chr7:104783553-104783821(-)$1	1	7	11	12.0000
....	chr6:44218102-44218332(+)$1	1	1	5	12.0000
.)).	chr19:8530127-8530394(+)$1	1	241	245	12.0000
....	chr7:128434301-128434581(+)$1	1	133	137	12.0000
....	chr2:37316747-37317082(+)$1	1	37	41	12.0000
....	chr20:17922839-17923115(-)$1	1	103	107	12.0000
..((	chr2:187359869-187360133(+)$1	1	61	65	12.0000
....	chr20:39709719-39709981(+)$1	1	6	10	12.0000
.)))	chr9:131456819-131457021(+)$1	1	72	76	12.0000
....	chr1:52305947-52306221(-)$1	1	124	128	12.0000
((..	chr3:25653920-25654194(-)$1	1	7	11	12.0000
..((	chr12:46355424-46355741(-)$1	1	47	51	12.0000
.((.	chr6:18236587-18236834(-)$1	1	53	57	12.0000
))))	chr2:232326624-232326828(-)$1	1	115	119	12.0000
)...	chr9:100777550-100777778(+)$1	1	101	105	12.0000
))))	chr1:35853013-35853309(+)$1	1	65	69	12.0000
((((	chr20:31024532-31024807(+)$1	1	43	47	12.0000
....	chr10:103558740-103559050(-)$1	1	3	7	12.0000
)...	chr1:214787036-214787356(+)$1	1	45	49	12.0000
)...	chr6:44217948-44218172(+)$1	1	125	129	12.0000
(((.	chr7:102952595-102952902(+)$1	1	136	140	12.0000
.(.(	chr3:37366602-37366869(+)$1	1	9	13	12.0000
....	chr1:16891197-16891510(-)$1	1	105	109	12.0000
.(((	chr15:50773906-50774218(+)$1	1	12	16	12.0000
....	chr1:28536386-28536653(-)$1	1	117	121	12.0000
..(.	chr2:99980633-99980866(+)$1	1	8	12	12.0000
.((.	chr18:9516857-9517167(+)$1	1	9	13	12.0000
....	chr9:131456217-131456421(+)$1	1	12	16	12.0000
(((.	chr13:111545288-111545560(-)$1	1	6	10	12.0000
....	chr4:4276097-4276379(-)$1	1	6	10	12.0000
)...	chr1:70716374-70716641(+)$1	1	53	57	12.0000
....	chr20:39713095-39713309(+)$1	1	27	31	12.0000
.((.	chr15:41756868-41757179(+)$1	1	110	114	12.0000
((((	chr1:205698627-205698849(-)$1	1	23	27	12.0000
.)))	chr6:153292187-153292496(-)$1	1	104	108	12.0000
))))	chr8:117861137-117861371(-)$1	1	107	111	12.0000
.(((	chr12:76449711-76449942(-)$1	1	11	15	12.0000
(...	chr1:52305876-52306147(-)$1	1	50	54	12.0000
.(((	chr8:30938502-30938835(+)$1	1	2	6	12.0000
(...	chr4:666991-667205(-)$1	1	36	40	12.0000
....	chr15:44107043-44107297(-)$1	1	114	118	12.0000
....	chr7:139102179-139102439(+)$1	1	4	8	12.0000
..))	chr1:70611237-70611618(-)$1	1	331	335	12.0000
.((.	chr12:6879227-6879439(+)$1	1	9	13	12.0000
))))	chr3:167437748-167438081(-)$1	1	60	64	12.0000
..))	chr9:100774604-100774817(+)$1	1	99	103	12.0000

#PSSM
A : 0.83	a : 0.16	
A : 0.83	a : 0.16	
G : 0.83	g : 0.16	
A : 0.82	a : 0.17	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_UTR_m1_run1.nuc.txt

#NT
GGGUGGGUCUGGU	chr16:67977002-67977278(-)$1	276	73	86	17.7254
GGGUGAGCGAGGG	chr16:29822112-29822389(+)$1	277	129	142	20.4705
GGGUGGGGGCAGU	chr16:89662948-89663248(+)$1	300	97	110	19.9803
GGGUGGGCAGGGG	chr8:145650611-145650879(-)$1	268	211	224	22.0392
gguugggaucggg	chr4:2935774-2936046(-)$1	272	4	17	16.9411
GGGUGGGUGGAGG	chr20:60709719-60709989(+)$1	270	1	14	20.7647
GAGUGGGCCUGGG	chr9:139730723-139730966(+)$1	243	25	38	17.2352
GGGUGGGUGCAGG	chr19:58990941-58991243(-)$1	302	96	109	21.4509
GGGUGGGCAGGGC	chr6:31938137-31938452(-)$1	315	81	94	19.5882
GUGUGGGUGUGGG	chr8:145649799-145650052(-)$1	253	194	207	19.3921
GGGUGGGGGUGGG	chr6:44122905-44123161(+)$1	256	236	249	25.5686
GGGUGCGCGCGCG	chr15:91446109-91446410(+)$1	301	106	119	17.0392
GGGUGGGGGGUGA	chr5:137274148-137274486(-)$1	338	141	154	19.2941
GGGUGGGUUGGGG	chr19:56825756-56826069(-)$1	313	79	92	20.5686
GGGUGGCCGUGGG	chr17:76818952-76819264(-)$1	312	156	169	20.9607
GGGUGAGCGUGGC	chr19:10464393-10464674(-)$1	281	95	108	18.8039
GGGUGGGGGUGGG	chr19:17354998-17355272(-)$1	274	95	108	25.5686
GGGAGGGGGCCGG	chr19:54659079-54659370(+)$1	291	192	205	18.5098
GGGUGGGCGCGGA	chr14:24036509-24036800(-)$1	291	104	117	23.5098
GGGUGGGCCUAGG	chr17:61909358-61909622(-)$1	264	108	121	18.6078
gggugggggccgg	chr19:7978275-7978589(+)$1	314	120	133	22.6274
GGCUGGGCGAGGA	chr8:144921650-144921988(-)$1	338	179	192	18.0196
GGGUGUGGGAGGG	chr19:49605961-49606194(+)$1	233	34	47	20.4705
AGGUGGGGGUGGG	chr7:100225640-100225897(-)$1	257	91	104	20.8627
GGGAGGGCGUGGG	chr11:208996-209303(+)$1	307	9	22	21.2549
GGGUGGGCAGGGA	chrX:48436905-48437208(+)$1	303	109	122	19.4901
GGGUGGGGUCGGU	chr19:58991066-58991366(-)$1	300	117	130	19.7843
gggugagggagga	chr6:29571107-29571370(-)$1	263	56	69	18.1176
ggccgggggcggg	chr3:128211666-128211984(+)$1	318	21	34	17.9215
GGGUGGGAGGGGA	chr8:66630587-66630842(-)$1	255	54	67	21.4509
GGUUGGGAGGGGC	chr19:10823038-10823330(+)$1	292	124	137	17.3333
ggguggggguggg	chr16:447637-447886(+)$1	249	16	29	25.5686
GGGUGGGGGUGGG	chr6:44123034-44123294(+)$1	260	107	120	25.5686
GGGUGGGUGAGGG	chr19:40738302-40738548(-)$1	246	185	198	23.3137
GGGUGGGCAGGGC	chr1:113247363-113247656(-)$1	293	77	90	19.5882
GGGUGGGGGCAGG	chr17:72768073-72768344(-)$1	271	100	113	22.9215
GGGUUGGGGUGGG	chr12:56631985-56632273(-)$1	288	9	22	20.7647
GGCUgggagcgga	chr11:18034093-18034427(-)$1	334	62	75	18.1176
GGGUGGCCGCGGC	chr11:62370211-62370512(-)$1	301	55	68	19.1960
GGGUGGGCAGGGC	chr9:139904698-139904994(-)$1	296	7	20	19.5882
GGCUGGGGCCGGG	chr22:19957568-19957851(-)$1	283	215	228	18.8039
gggugggggccgg	chr2:54197776-54198040(-)$1	264	62	75	22.6274
GGGGGCGCGCGGC	chr6:29600375-29600653(-)$1	278	64	77	15.1764
gggugggggcggg	chr4:2936000-2936264(-)$1	264	62	75	26.2549
GGGUGGACGGGGG	chr16:4744433-4744725(+)$1	292	244	257	20.9607
GGGUGGACGGGGG	chr16:4744586-4744950(+)$1	364	91	104	20.9607
GGGUGGGGGCAGG	chr9:139904631-139904898(-)$1	267	30	43	22.9215
GGGAGGGGGCUGG	chr22:19957651-19957959(-)$1	308	96	109	18.4117
GGGGGGGCGGGGC	chr19:41119488-41119744(+)$1	256	101	114	18.7058
gggugggagcggg	chr9:35690594-35690856(-)$1	262	105	118	24.6862

#otherMatches

#Struct PSSM
ccc]cccFFFFFF	chr19:50815919-50816230(-)$1	311	92	105	21.5490
KDDDD{GGGGGGG	chr16:67977002-67977278(-)$1	276	73	86	17.7254
EEEEELLLFFFFF	chr16:29822112-29822389(+)$1	277	129	142	20.4705
:IIIIIIIII{A{	chr16:89662948-89663248(+)$1	300	97	110	19.9803
IIIIIIIYYEEEE	chr8:145650611-145650879(-)$1	268	211	224	22.0392
EEECCCLLLCCCd	chr4:2935774-2936046(-)$1	272	4	17	16.9411
DDDD{EEEEE{DD	chr20:60709719-60709989(+)$1	270	1	14	20.7647
G{A{FFFFFFddd	chr9:139730723-139730966(+)$1	243	25	38	17.2352
FGGGGGGGDDDDe	chr19:58990941-58991243(-)$1	302	96	109	21.4509
gggg:FFFFFF::	chr6:31938137-31938452(-)$1	315	81	94	19.5882
2a]bb]dddd22=	chr8:145649799-145650052(-)$1	253	194	207	19.3921
:::::HHHHHHHH	chr6:44122905-44123161(+)$1	256	236	249	25.5686
:dddd[dddd%%%	chr15:91446109-91446410(+)$1	301	106	119	17.0392
HHHHHHHH}FFFF	chr5:137274148-137274486(-)$1	338	141	154	19.2941
hhhhhhh22ffff	chr19:56825756-56826069(-)$1	313	79	92	20.5686
g]eeeee]bb666	chr17:76818952-76819264(-)$1	312	156	169	20.9607
eeedddd]bbiii	chr19:10464393-10464674(-)$1	281	95	108	18.8039
f"""ffffff!!c	chr19:17354998-17355272(-)$1	274	95	108	25.5686
fff::eeeee[ff	chr19:54659079-54659370(+)$1	291	192	205	18.5098
GGG{FFFFFFMMM	chr14:24036509-24036800(-)$1	291	104	117	23.5098
oa]eeeeebbeee	chr17:61909358-61909622(-)$1	264	108	121	18.6078
ddd[bb[gggggg	chr19:7978275-7978589(+)$1	314	120	133	22.6274
cc[ffffffdddd	chr8:144921650-144921988(-)$1	338	179	192	18.0196
fff]bbIIIIIII	chr19:49605961-49606194(+)$1	233	34	47	20.4705
!ddddhhhhhhhh	chr7:100225640-100225897(-)$1	257	91	104	20.8627
MMMMGGGGGGGa[	chr11:208996-209303(+)$1	307	9	22	21.2549
2ddddBB{EEEEE	chrX:48436905-48437208(+)$1	303	109	122	19.4901
ddd22ccc]bb::	chr19:58991066-58991366(-)$1	300	117	130	19.7843
MJJJJJJJJJJJJ	chr6:29571107-29571370(-)$1	263	56	69	18.1176
!!iiiiiiiii%%	chr3:128211666-128211984(+)$1	318	21	34	17.9215
HHHHHbbbbeeee	chr8:66630587-66630842(-)$1	255	54	67	21.4509
bb!!ccc[eeeee	chr19:10823038-10823330(+)$1	292	124	137	17.3333
qqqqqqqccc]cc	chr16:447637-447886(+)$1	249	16	29	25.5686
qqqqqqdddd]a]	chr6:44123034-44123294(+)$1	260	107	120	25.5686
GBBYYDDDD}CCC	chr19:40738302-40738548(-)$1	246	185	198	23.3137
qqdddd]gggggg	chr1:113247363-113247656(-)$1	293	77	90	19.5882
bb!!ffffffmmm	chr17:72768073-72768344(-)$1	271	100	113	22.9215
EEEE:bb[ggggg	chr12:56631985-56632273(-)$1	288	9	22	20.7647
eeee]bb22ccc:	chr11:18034093-18034427(-)$1	334	62	75	18.1176
EEE:::ggggggg	chr11:62370211-62370512(-)$1	301	55	68	19.1960
===[dddda[aee	chr9:139904698-139904994(-)$1	296	7	20	19.5882
hhhhhhhhIIIII	chr22:19957568-19957851(-)$1	283	215	228	18.8039
7a]ccc]dddd]a	chr2:54197776-54198040(-)$1	264	62	75	22.6274
ppdddd]a333bb	chr6:29600375-29600653(-)$1	278	64	77	15.1764
eeeee[ccc[bb[	chr4:2936000-2936264(-)$1	264	62	75	26.2549
nnnnngggggggC	chr16:4744433-4744725(+)$1	292	244	257	20.9607
nnnnngggggggC	chr16:4744586-4744950(+)$1	364	91	104	20.9607
:gggggggqqqqq	chr9:139904631-139904898(-)$1	267	30	43	22.9215
GGGGGbb!!bbnn	chr22:19957651-19957959(-)$1	308	96	109	18.4117
[bb!!a[a[dddd	chr19:41119488-41119744(+)$1	256	101	114	18.7058
dqqqqqqqqdddd	chr9:35690594-35690856(-)$1	262	105	118	24.6862

#DB
))).)))((((((	chr19:50815919-50816230(-)$1	1	92	105	21.5490
.((((.(((((((	chr16:67977002-67977278(-)$1	1	73	86	17.7254
(((((...(((((	chr16:29822112-29822389(+)$1	1	129	142	20.4705
.(((((((((.(.	chr16:89662948-89663248(+)$1	1	97	110	19.9803
)))))))..))))	chr8:145650611-145650879(-)$1	1	211	224	22.0392
((((((...((((	chr4:2935774-2936046(-)$1	1	4	17	16.9411
((((.(((((.((	chr20:60709719-60709989(+)$1	1	1	14	20.7647
(.(.(((((((((	chr9:139730723-139730966(+)$1	1	25	38	17.2352
(((((((((((((	chr19:58990941-58991243(-)$1	1	96	109	21.4509
)))).))))))..	chr6:31938137-31938452(-)$1	1	81	94	19.5882
.).)).))))..)	chr8:145649799-145650052(-)$1	1	194	207	19.3921
.....))))))))	chr6:44122905-44123161(+)$1	1	236	249	25.5686
.((((.((((...	chr15:91446109-91446410(+)$1	1	106	119	17.0392
)))))))).))))	chr5:137274148-137274486(-)$1	1	141	154	19.2941
)))))))..))))	chr19:56825756-56826069(-)$1	1	79	92	20.5686
).))))).))...	chr17:76818952-76819264(-)$1	1	156	169	20.9607
))))))).)))))	chr19:10464393-10464674(-)$1	1	95	108	18.8039
(...((((((..(	chr19:17354998-17355272(-)$1	1	95	108	25.5686
)))..(((((.((	chr19:54659079-54659370(+)$1	1	192	205	18.5098
(((.((((((...	chr14:24036509-24036800(-)$1	1	104	117	23.5098
.).))))))))))	chr17:61909358-61909622(-)$1	1	108	121	18.6078
(((.((.((((((	chr19:7978275-7978589(+)$1	1	120	133	22.6274
((.((((((((((	chr8:144921650-144921988(-)$1	1	179	192	18.0196
))).))(((((((	chr19:49605961-49606194(+)$1	1	34	47	20.4705
.((((((((((((	chr7:100225640-100225897(-)$1	1	91	104	20.8627
....((((((((.	chr11:208996-209303(+)$1	1	9	22	21.2549
.))))((.(((((	chrX:48436905-48437208(+)$1	1	109	122	19.4901
)))..))).))..	chr19:58991066-58991366(-)$1	1	117	130	19.7843
.((((((((((((	chr6:29571107-29571370(-)$1	1	56	69	18.1176
..(((((((((..	chr3:128211666-128211984(+)$1	1	21	34	17.9215
)))))((((((((	chr8:66630587-66630842(-)$1	1	54	67	21.4509
((..(((.(((((	chr19:10823038-10823330(+)$1	1	124	137	17.3333
.......))).))	chr16:447637-447886(+)$1	1	16	29	25.5686
......)))).).	chr6:44123034-44123294(+)$1	1	107	120	25.5686
)))..)))).)))	chr19:40738302-40738548(-)$1	1	185	198	23.3137
..)))).))))))	chr1:113247363-113247656(-)$1	1	77	90	19.5882
((..((((((...	chr17:72768073-72768344(-)$1	1	100	113	22.9215
((((.((.(((((	chr12:56631985-56632273(-)$1	1	9	22	20.7647
)))).))..))).	chr11:18034093-18034427(-)$1	1	62	75	18.1176
(((...(((((((	chr11:62370211-62370512(-)$1	1	55	68	19.1960
(((.(((((.(((	chr9:139904698-139904994(-)$1	1	7	20	19.5882
)))))))))))))	chr22:19957568-19957851(-)$1	1	215	228	18.8039
.).))).)))).)	chr2:54197776-54198040(-)$1	1	62	75	22.6274
..)))).)...))	chr6:29600375-29600653(-)$1	1	64	77	15.1764
(((((.(((.((.	chr4:2936000-2936264(-)$1	1	62	75	26.2549
.....))))))))	chr16:4744433-4744725(+)$1	1	244	257	20.9607
.....))))))))	chr16:4744586-4744950(+)$1	1	91	104	20.9607
.(((((((.....	chr9:139904631-139904898(-)$1	1	30	43	22.9215
(((((((..((..	chr22:19957651-19957959(-)$1	1	96	109	18.4117
.((..(.(.((((	chr19:41119488-41119744(+)$1	1	101	114	18.7058
(........))))	chr9:35690594-35690856(-)$1	1	105	118	24.6862

#PSSM
G : 0.80	g : 0.15	U : 0.01	A : 0.01	
G : 0.80	g : 0.15	A : 0.01	U : 0.01	
G : 0.76	g : 0.11	C : 0.05	u : 0.01	c : 0.01	U : 0.01	
U : 0.74	u : 0.13	A : 0.05	G : 0.03	c : 0.01	
G : 0.80	g : 0.17	U : 0.01	
G : 0.72	g : 0.15	A : 0.03	C : 0.03	U : 0.01	a : 0.01	
G : 0.74	g : 0.17	C : 0.03	A : 0.03	
C : 0.37	G : 0.29	U : 0.11	g : 0.11	a : 0.05	A : 0.03	
G : 0.60	g : 0.15	A : 0.09	C : 0.07	U : 0.03	u : 0.01	
C : 0.25	G : 0.25	U : 0.23	c : 0.13	A : 0.07	a : 0.01	u : 0.01	
G : 0.64	g : 0.13	A : 0.11	U : 0.03	c : 0.03	C : 0.01	
G : 0.80	g : 0.17	C : 0.01	
G : 0.50	C : 0.15	g : 0.13	A : 0.09	U : 0.05	a : 0.03	

#score	1047.0392156862756
#seq	51
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_transcript_m2_run1.nuc.txt

#NT
UUUUGCAAUU	chr3:30735465-30735703(+)$1	238	190	200	14.2424
uuuuguaaau	chr6:8012764-8013028(-)$1	264	214	224	21.2878
UUUUGUUAGU	chr11:62283726-62283994(-)$1	268	170	180	14.3181
UUUUGUAACU	chr6:159054957-159055214(+)$1	257	206	216	17.8787
UUAUGUAAAG	chr1:51737148-51737441(+)$1	293	43	53	13.2575
AUUUGGAAAU	chr2:26513051-26513321(+)$1	270	78	88	13.8636
UUUUAUAAAU	chr7:75046316-75046599(-)$1	283	93	103	17.8030
UUUUGUAUUU	chr5:72210024-72210292(+)$1	268	105	115	15.7575
UUCUGUAGAU	chr10:89513846-89514110(-)$1	264	95	105	14.6212
AUUUGUAUAU	chr7:45932793-45933000(+)$1	207	122	132	15.4545
UUAUGUAAAU	chr20:36720268-36720542(+)$1	274	31	41	17.4999
UUUUGUAACC	chr12:63037796-63038051(-)$1	255	127	137	13.7878
UAUUUUAAAU	chr11:125827256-125827555(-)$1	299	133	143	13.3333
UUGUGUACAU	chr3:169813053-169813309(-)$1	256	27	37	14.8484
UUUUAAAAAU	chr9:133512808-133513037(+)$1	229	3	13	14.2424
AUUUGUAUAU	chr7:45932781-45932993(+)$1	212	134	144	15.4545
UAUUAUAAAU	chr8:124332002-124332277(-)$1	275	89	99	13.3333
UUUUGCAUAU	chr15:77242023-77242323(+)$1	300	100	110	15.3787
GUUUGUAAUU	chr8:62415327-62415574(-)$1	247	16	26	13.8636
UUUUGUAAAA	chr18:55713286-55713532(+)$1	246	123	133	17.3484
UUGUGUUAAU	chr14:21698835-21699170(-)$1	335	181	191	14.1666
UUGUGGAAAU	chr2:62451011-62451278(+)$1	267	66	76	13.9393
UUUUGUAUAU	chr4:100818311-100818600(-)$1	289	96	106	19.0909
UUUUGAAAGU	chr8:29921090-29921348(-)$1	258	176	186	14.3181
UUUUAAAAAU	chr2:206858479-206858747(-)$1	268	70	80	14.2424
UUUUGCAUAU	chr8:125563015-125563284(-)$1	269	37	47	15.3787
CUUUGUAACU	chr8:98737854-98738140(+)$1	286	222	232	13.9393
UUUUGUAGCU	chr8:97622198-97622428(+)$1	230	26	36	14.9242
UUUUCAAAAU	chr8:97621815-97622049(+)$1	234	0	10	13.9393
UUUUAUAUAU	chr16:81744805-81745075(+)$1	270	73	83	15.6060
UUUUUUAAAU	chr10:112771659-112771952(+)$1	293	75	85	17.8030
UUUUGAUAAU	chr2:175938012-175938341(-)$1	329	24	34	14.1666
uuuuucaaau	chr11:43467802-43468096(+)$1	294	252	262	14.0909
UUUUGUUAAC	chr3:105294209-105294465(+)$1	256	113	123	13.6363
UUUUGUCACU	chr17:61671434-61671695(+)$1	261	238	248	14.0151
CUUUGUACAU	chr21:40195461-40195725(+)$1	264	143	153	14.4696
UUUUGUUAAU	chr20:3018728-3019084(+)$1	356	108	118	17.7272
AUUUAUAAAU	chr6:117882778-117883080(-)$1	302	88	98	14.1666
UUUUGUUGAU	chr11:64084194-64084417(-)$1	223	124	134	14.7727
UUUUGUAAAU	chr20:46283053-46283326(+)$1	273	70	80	21.2878
UUUUGUAUGU	chr16:85706912-85707190(+)$1	278	45	55	15.6818
AUUUGUACAU	chr6:143073788-143074069(-)$1	281	115	125	14.7727
uuuuggauau	chr2:188403458-188403721(+)$1	263	65	75	15.3030
UUUUGUAGAU	chr6:128290383-128290663(-)$1	280	18	28	18.3333
UUUUGUAUAU	chr8:126034245-126034571(+)$1	326	90	100	19.0909
uugugucaau	chr11:65196921-65197139(+)$1	218	9	19	13.8636
UUAUGUAAAU	chr11:27387801-27388049(-)$1	248	38	48	17.4999
UCUUGUAAAU	chr5:167975742-167976013(-)$1	271	217	227	16.6666
UUUUCUAAAA	chr1:92146067-92146316(-)$1	249	142	152	13.5606
UUUUGUUAAU	chr11:121500585-121500848(+)$1	263	163	173	17.7272
UUUUGUAUAC	chr2:206858414-206858665(-)$1	251	63	73	14.9999
AUCUGUAAAU	chr21:30718024-30718286(+)$1	262	84	94	13.9393
AUUUGUAAAU	chr12:39687082-39687449(-)$1	367	277	287	17.6515
UUUUGUACAA	chr6:20493341-20493608(+)$1	267	18	28	14.4696
CUUUGUAUAU	chr3:172115937-172116166(+)$1	229	122	132	15.1515
UAUUUUAAAU	chr11:130014395-130014628(+)$1	233	96	106	13.3333
UUUUUUAAAA	chr9:4711233-4711505(-)$1	272	52	62	13.8636
UUUUGUGUAU	chr16:69738314-69738567(+)$1	253	23	33	15.1515
UUUUGAAAAA	chr12:98941834-98942089(+)$1	255	84	94	13.7878
UUUUGUACUU	chr16:81078593-81078872(+)$1	279	119	129	15.0757
UUUUGUCAUU	chr2:87000794-87001070(+)$1	276	91	101	14.0909
UUGUGUAAUU	chr15:73852341-73852622(-)$1	281	189	199	14.3939
UUCUGUAUAU	chr3:155545658-155545924(-)$1	266	76	86	15.3787
UUUUUUAAGU	chr11:27516519-27516775(-)$1	256	89	99	14.3939
UUGUGUAAGU	chr11:130013508-130013764(+)$1	256	222	232	14.3181

#otherMatches

#Struct PSSM
iiiii66666	chr15:55903974-55904264(-)$1	290	229	239	13.6363
bffffffnnn	chr3:30735465-30735703(+)$1	238	190	200	14.2424
eee22hhhhh	chr6:8012764-8013028(-)$1	264	214	224	21.2878
EEZZZHHHHH	chr11:62283726-62283994(-)$1	268	170	180	14.3181
nnnndddd]f	chr6:159054957-159055214(+)$1	257	206	216	17.8787
FFF{JJJJJJ	chr1:51737148-51737441(+)$1	293	43	53	13.2575
::::dddd!!	chr2:26513051-26513321(+)$1	270	78	88	13.8636
iiiiiii22g	chr7:75046316-75046599(-)$1	283	93	103	17.8030
:::::=====	chr5:72210024-72210292(+)$1	268	105	115	15.7575
dccceeeee"	chr10:89513846-89514110(-)$1	264	95	105	14.6212
i]dddddddd	chr7:45932793-45933000(+)$1	207	122	132	15.4545
ddddmmmmdd	chr20:36720268-36720542(+)$1	274	31	41	17.4999
eeeee[ccca	chr12:63037796-63038051(-)$1	255	127	137	13.7878
gggFFFFFF}	chr11:125827256-125827555(-)$1	299	133	143	13.3333
LLIIIIIIII	chr3:169813053-169813309(-)$1	256	27	37	14.8484
::::::::::	chr9:133512808-133513037(+)$1	229	3	13	14.2424
i22eeeee::	chr7:45932781-45932993(+)$1	212	134	144	15.4545
=======bbd	chr8:124332002-124332277(-)$1	275	89	99	13.3333
!!dddd[ccc	chr15:77242023-77242323(+)$1	300	100	110	15.3787
::::DDDDOO	chr8:62415327-62415574(-)$1	247	16	26	13.8636
4444iiiiii	chr18:55713286-55713532(+)$1	246	123	133	17.3484
EEEEEEE:::	chr14:21698835-21699170(-)$1	335	181	191	14.1666
ee333ggggg	chr2:62451011-62451278(+)$1	267	66	76	13.9393
::hhhhhhhh	chr4:100818311-100818600(-)$1	289	96	106	19.0909
[ccc[a[eee	chr8:29921090-29921348(-)$1	258	176	186	14.3181
gggggrrrrr	chr2:206858479-206858747(-)$1	268	70	80	14.2424
=======lll	chr8:125563015-125563284(-)$1	269	37	47	15.3787
gggggg]ggg	chr8:98737854-98738140(+)$1	286	222	232	13.9393
bb$$$$$eee	chr8:97622198-97622428(+)$1	230	26	36	14.9242
:::::iiiii	chr8:97621815-97622049(+)$1	234	0	10	13.9393
::::::::::	chr16:81744805-81745075(+)$1	270	73	83	15.6060
ccc[hhhhhh	chr10:112771659-112771952(+)$1	293	75	85	17.8030
:::dddd###	chr2:175938012-175938341(-)$1	329	24	34	14.1666
>>>>>>>>ff	chr11:43467802-43468096(+)$1	294	252	262	14.0909
hh[dddduuu	chr3:105294209-105294465(+)$1	256	113	123	13.6363
tttttttttt	chr17:61671434-61671695(+)$1	261	238	248	14.0151
ffff]affff	chr21:40195461-40195725(+)$1	264	143	153	14.4696
333ccchhhh	chr20:3018728-3019084(+)$1	356	108	118	17.7272
4444ffffff	chr6:117882778-117883080(-)$1	302	88	98	14.1666
!bbmmmmbb2	chr11:64084194-64084417(-)$1	223	124	134	14.7727
meeeee::::	chr20:46283053-46283326(+)$1	273	70	80	21.2878
dd!!cccrrr	chr16:85706912-85707190(+)$1	278	45	55	15.6818
iiiiiiiii]	chr6:143073788-143074069(-)$1	281	115	125	14.7727
fffrrrrrrr	chr2:188403458-188403721(+)$1	263	65	75	15.3030
""dddd&&&&	chr6:128290383-128290663(-)$1	280	18	28	18.3333
hhhhhh"""e	chr8:126034245-126034571(+)$1	326	90	100	19.0909
GNNNNNCCCK	chr11:65196921-65197139(+)$1	218	9	19	13.8636
2ffffff:::	chr11:27387801-27388049(-)$1	248	38	48	17.4999
++++gggggg	chr5:167975742-167976013(-)$1	271	217	227	16.6666
ffffnnnnnf	chr1:92146067-92146316(-)$1	249	142	152	13.5606
oooooodddd	chr11:121500585-121500848(+)$1	263	163	173	17.7272
:=========	chr2:206858414-206858665(-)$1	251	63	73	14.9999
ettttttttt	chr21:30718024-30718286(+)$1	262	84	94	13.9393
2hhhhhhhh]	chr12:39687082-39687449(-)$1	367	277	287	17.6515
HHHHHHHH::	chr6:20493341-20493608(+)$1	267	18	28	14.4696
ggggg:::::	chr3:172115937-172116166(+)$1	229	122	132	15.1515
yyyyyyyyyy	chr11:130014395-130014628(+)$1	233	96	106	13.3333
hhhh"""fff	chr9:4711233-4711505(-)$1	272	52	62	13.8636
========::	chr16:69738314-69738567(+)$1	253	23	33	15.1515
22========	chr12:98941834-98942089(+)$1	255	84	94	13.7878
nnnnccc333	chr16:81078593-81078872(+)$1	279	119	129	15.0757
::ffffffoo	chr2:87000794-87001070(+)$1	276	91	101	14.0909
ggggg!!ggg	chr15:73852341-73852622(-)$1	281	189	199	14.3939
ffffff333i	chr3:155545658-155545924(-)$1	266	76	86	15.3787
llggggggg:	chr11:27516519-27516775(-)$1	256	89	99	14.3939
]=========	chr11:130013508-130013764(+)$1	256	222	232	14.3181

#DB
))))).....	chr15:55903974-55904264(-)$1	1	229	239	13.6363
(((((((...	chr3:30735465-30735703(+)$1	1	190	200	14.2424
)))..)))))	chr6:8012764-8013028(-)$1	1	214	224	21.2878
))...)))))	chr11:62283726-62283994(-)$1	1	170	180	14.3181
....)))).)	chr6:159054957-159055214(+)$1	1	206	216	17.8787
(((.((((((	chr1:51737148-51737441(+)$1	1	43	53	13.2575
....((((..	chr2:26513051-26513321(+)$1	1	78	88	13.8636
)))))))..)	chr7:75046316-75046599(-)$1	1	93	103	17.8030
.....(((((	chr5:72210024-72210292(+)$1	1	105	115	15.7575
))))(((((.	chr10:89513846-89514110(-)$1	1	95	105	14.6212
).))))((((	chr7:45932793-45933000(+)$1	1	122	132	15.4545
((((....))	chr20:36720268-36720542(+)$1	1	31	41	17.4999
(((((.((((	chr12:63037796-63038051(-)$1	1	127	137	13.7878
))))))))).	chr11:125827256-125827555(-)$1	1	133	143	13.3333
..((((((((	chr3:169813053-169813309(-)$1	1	27	37	14.8484
..........	chr9:133512808-133513037(+)$1	1	3	13	14.2424
)..)))))..	chr7:45932781-45932993(+)$1	1	134	144	15.4545
((((((((((	chr8:124332002-124332277(-)$1	1	89	99	13.3333
..((((.(((	chr15:77242023-77242323(+)$1	1	100	110	15.3787
....((((..	chr8:62415327-62415574(-)$1	1	16	26	13.8636
....))))))	chr18:55713286-55713532(+)$1	1	123	133	17.3484
(((((((...	chr14:21698835-21699170(-)$1	1	181	191	14.1666
))...)))))	chr2:62451011-62451278(+)$1	1	66	76	13.9393
..((((((((	chr4:100818311-100818600(-)$1	1	96	106	19.0909
.(((.(.(((	chr8:29921090-29921348(-)$1	1	176	186	14.3181
(((((.....	chr2:206858479-206858747(-)$1	1	70	80	14.2424
(((((((...	chr8:125563015-125563284(-)$1	1	37	47	15.3787
)))))).)))	chr8:98737854-98738140(+)$1	1	222	232	13.9393
((.....(((	chr8:97622198-97622428(+)$1	1	26	36	14.9242
.....(((((	chr8:97621815-97622049(+)$1	1	0	10	13.9393
..........	chr16:81744805-81745075(+)$1	1	73	83	15.6060
(((.((((((	chr10:112771659-112771952(+)$1	1	75	85	17.8030
...((((...	chr2:175938012-175938341(-)$1	1	24	34	14.1666
........))	chr11:43467802-43468096(+)$1	1	252	262	14.0909
((.((((...	chr3:105294209-105294465(+)$1	1	113	123	13.6363
..........	chr17:61671434-61671695(+)$1	1	238	248	14.0151
)))).)((((	chr21:40195461-40195725(+)$1	1	143	153	14.4696
...)))))))	chr20:3018728-3019084(+)$1	1	108	118	17.7272
....))))))	chr6:117882778-117883080(-)$1	1	88	98	14.1666
.((....)).	chr11:64084194-64084417(-)$1	1	124	134	14.7727
.)))))....	chr20:46283053-46283326(+)$1	1	70	80	21.2878
((..(((...	chr16:85706912-85707190(+)$1	1	45	55	15.6818
))))))))).	chr6:143073788-143074069(-)$1	1	115	125	14.7727
(((.......	chr2:188403458-188403721(+)$1	1	65	75	15.3030
..((((....	chr6:128290383-128290663(-)$1	1	18	28	18.3333
((((((...(	chr8:126034245-126034571(+)$1	1	90	100	19.0909
(.....(((.	chr11:65196921-65197139(+)$1	1	9	19	13.8636
.))))))...	chr11:27387801-27388049(-)$1	1	38	48	17.4999
....((((((	chr5:167975742-167976013(-)$1	1	217	227	16.6666
((((.....)	chr1:92146067-92146316(-)$1	1	142	152	13.5606
......))))	chr11:121500585-121500848(+)$1	1	163	173	17.7272
.(((((((((	chr2:206858414-206858665(-)$1	1	63	73	14.9999
(.........	chr21:30718024-30718286(+)$1	1	84	94	13.9393
.)))))))).	chr12:39687082-39687449(-)$1	1	277	287	17.6515
((((((((..	chr6:20493341-20493608(+)$1	1	18	28	14.4696
))))).....	chr3:172115937-172116166(+)$1	1	122	132	15.1515
..........	chr11:130014395-130014628(+)$1	1	96	106	13.3333
((((...(((	chr9:4711233-4711505(-)$1	1	52	62	13.8636
))))))))..	chr16:69738314-69738567(+)$1	1	23	33	15.1515
..))))))))	chr12:98941834-98942089(+)$1	1	84	94	13.7878
....)))...	chr16:81078593-81078872(+)$1	1	119	129	15.0757
..((((((..	chr2:87000794-87001070(+)$1	1	91	101	14.0909
(((((..(((	chr15:73852341-73852622(-)$1	1	189	199	14.3939
))))))...)	chr3:155545658-155545924(-)$1	1	76	86	15.3787
..))))))).	chr11:27516519-27516775(-)$1	1	89	99	14.3939
.)))))))))	chr11:130013508-130013764(+)$1	1	222	232	14.3181

#PSSM
U : 0.77	A : 0.10	u : 0.06	C : 0.04	G : 0.01	
U : 0.87	u : 0.06	A : 0.04	C : 0.01	
U : 0.75	G : 0.07	C : 0.06	u : 0.04	A : 0.04	g : 0.01	
U : 0.93	u : 0.06	
G : 0.74	A : 0.09	U : 0.07	g : 0.04	C : 0.03	u : 0.01	
U : 0.77	A : 0.09	C : 0.04	u : 0.03	G : 0.03	c : 0.01	g : 0.01	
A : 0.77	U : 0.10	a : 0.04	G : 0.03	C : 0.03	c : 0.01	
A : 0.60	U : 0.19	C : 0.07	G : 0.06	a : 0.04	u : 0.01	
A : 0.69	U : 0.09	G : 0.07	C : 0.07	a : 0.06	
U : 0.80	A : 0.07	u : 0.06	C : 0.04	G : 0.01	

#score	1009.3939393939385
#seq	66
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_UTR_m2_run1.nuc.txt

#NT
ugc	chr11:31453171-31453435(+)$1	264	66	69	9.0000
UGC	chr19:18977582-18977882(+)$1	300	15	18	9.0000
ugc	chr1:19585684-19585995(+)$1	311	12	15	9.0000
UGC	chr17:56167687-56167956(+)$1	269	33	36	9.0000
UGC	chr8:21863840-21864100(+)$1	260	13	16	9.0000
UGC	chr1:183521880-183522158(+)$1	278	117	120	9.0000
UGC	chr21:46396551-46396835(+)$1	284	11	14	9.0000
UGC	chr7:935128-935381(+)$1	253	50	53	9.0000
UGC	chr5:140895647-140895937(-)$1	290	0	3	9.0000
ugc	chr7:65619235-65619458(+)$1	223	3	6	9.0000
UGC	chr17:37075090-37075317(+)$1	227	39	42	9.0000
UGC	chr17:37076366-37076621(+)$1	255	35	38	9.0000
UGC	chr12:121136506-121136750(+)$1	244	101	104	9.0000
UGC	chr10:102122982-102123237(+)$1	255	75	78	9.0000
UGC	chr9:130869960-130870251(+)$1	291	44	47	9.0000
UGC	chr16:74656131-74656460(-)$1	329	4	7	9.0000
UGC	chr20:61920036-61920307(+)$1	271	8	11	9.0000
UGC	chr22:21802758-21803036(+)$1	278	56	59	9.0000
UGC	chr1:33239691-33239943(+)$1	252	10	13	9.0000
UGC	chr1:27731831-27732098(-)$1	267	39	42	9.0000
UGC	chr11:75283618-75283870(+)$1	252	149	152	9.0000
ugc	chr17:73885056-73885345(-)$1	289	61	64	9.0000
UGC	chr1:156220203-156220476(-)$1	273	22	25	9.0000
UGC	chr19:8468333-8468646(+)$1	313	6	9	9.0000
UGC	chr1:11847046-11847294(-)$1	248	190	193	9.0000
UGC	chr21:46270311-46270685(-)$1	374	27	30	9.0000
UGC	chr5:154194106-154194330(+)$1	224	99	102	9.0000
UGC	chr19:1582518-1582758(-)$1	240	91	94	9.0000
ugc	chr14:75202722-75202954(+)$1	232	3	6	9.0000
ugc	chr1:36067997-36068217(-)$1	220	39	42	9.0000
UGC	chr19:55998518-55998769(+)$1	251	90	93	9.0000
ugc	chr6:42046709-42046962(+)$1	253	22	25	9.0000
UGC	chr11:61634398-61634658(+)$1	260	70	73	9.0000
UGC	chr1:15755369-15755620(+)$1	251	39	42	9.0000
UGC	chr19:8468948-8469199(+)$1	251	13	16	9.0000
ugc	chr12:117467527-117467814(+)$1	287	85	88	9.0000
ugc	chr22:24968307-24968583(+)$1	276	148	151	9.0000
UGC	chr15:64977033-64977293(+)$1	260	134	137	9.0000
UGC	chr3:126753126-126753399(+)$1	273	5	8	9.0000
ugc	chr19:18474930-18475190(+)$1	260	9	12	9.0000
UGC	chr7:44253298-44253625(+)$1	327	67	70	9.0000
UGC	chr17:37077226-37077478(+)$1	252	44	47	9.0000
UGC	chr17:76670787-76671061(-)$1	274	25	28	9.0000
UGC	chr16:1750413-1750668(+)$1	255	1	4	9.0000
UGC	chr21:47609112-47609365(-)$1	253	8	11	9.0000
UGC	chr19:6414496-6414798(-)$1	302	57	60	9.0000
ugc	chr14:75202340-75202562(+)$1	222	7	10	9.0000
UGC	chr20:60709625-60709882(+)$1	257	10	13	9.0000
UGC	chr9:139820524-139820789(+)$1	265	24	27	9.0000
UGC	chr19:1592526-1592792(-)$1	266	183	186	9.0000
UGC	chr1:38174119-38174377(+)$1	258	60	63	9.0000
UGC	chr19:1577351-1577650(-)$1	299	11	14	9.0000
UGC	chr1:11849144-11849419(-)$1	275	14	17	9.0000
UGC	chr17:43002229-43002532(-)$1	303	13	16	9.0000
UGC	chr11:1774133-1774432(-)$1	299	116	119	9.0000
UGC	chr9:33111913-33112179(-)$1	266	14	17	9.0000
ugc	chr8:11700171-11700418(-)$1	247	117	120	9.0000
UGC	chr2:219139172-219139429(-)$1	257	31	34	9.0000
UGC	chr17:40462700-40463009(+)$1	309	22	25	9.0000
UGC	chr17:46137334-46137607(+)$1	273	267	270	9.0000
UGC	chr1:11849915-11850155(-)$1	240	8	11	9.0000
UGC	chr16:2507412-2507687(+)$1	275	20	23	9.0000
UGC	chr8:41510976-41511232(-)$1	256	103	106	9.0000
UGC	chr15:70341710-70341952(-)$1	242	47	50	9.0000
UGC	chr9:136209122-136209378(-)$1	256	0	3	9.0000
ugc	chr2:47130421-47130676(-)$1	255	104	107	9.0000
UGC	chr9:137023885-137024191(+)$1	306	24	27	9.0000
ugc	chr17:76106405-76106645(-)$1	240	1	4	9.0000
ugc	chr20:32233938-32234202(+)$1	264	113	116	9.0000
UGC	chr12:50493856-50494106(+)$1	250	0	3	9.0000
UGC	chr19:47112792-47113013(+)$1	221	1	4	9.0000
UGC	chr16:31501591-31501871(-)$1	280	48	51	9.0000
ugc	chr5:79923190-79923452(-)$1	262	208	211	9.0000
UGC	chr3:128211718-128211944(+)$1	226	92	95	9.0000
UGC	chr21:47610226-47610510(-)$1	284	6	9	9.0000
UGC	chr22:22276220-22276511(-)$1	291	18	21	9.0000
UGC	chr1:31342491-31342746(-)$1	255	21	24	9.0000
UGC	chr17:46137246-46137534(+)$1	288	25	28	9.0000
ugc	chr1:55530025-55530287(+)$1	262	35	38	9.0000
ugc	chr1:27733492-27733750(-)$1	258	43	46	9.0000
UGC	chr15:58246093-58246380(-)$1	287	25	28	9.0000
UGC	chr11:118915750-118916034(-)$1	284	19	22	9.0000
UGC	chr14:103602256-103602512(+)$1	256	68	71	9.0000
UGC	chr1:17733515-17733748(-)$1	233	21	24	9.0000
ugc	chr19:11256541-11256771(-)$1	230	18	21	9.0000
UGC	chr3:50644328-50644624(-)$1	296	63	66	9.0000
UGC	chr12:56365648-56365905(+)$1	257	11	14	9.0000
UGC	chr10:104240340-104240621(-)$1	281	75	78	9.0000
UGC	chr10:72521210-72521472(+)$1	262	28	31	9.0000
UGC	chr7:73609959-73610255(+)$1	296	16	19	9.0000
UGC	chr19:40739091-40739350(-)$1	259	0	3	9.0000
ugc	chr11:767672-767951(-)$1	279	21	24	9.0000
UGC	chr17:3828484-3828747(-)$1	263	79	82	9.0000
UGC	chr19:2430099-2430348(-)$1	249	11	14	9.0000
UGC	chr17:56167314-56167565(+)$1	251	32	35	9.0000
UGC	chr3:47894044-47894327(-)$1	283	68	71	9.0000
UGC	chr19:2754942-2755244(-)$1	302	114	117	9.0000

#otherMatches

#Struct PSSM
===	chr16:29679094-29679321(+)$1	227	54	57	9.0000
cc]	chr11:31453171-31453435(+)$1	264	66	69	9.0000
mmm	chr19:18977582-18977882(+)$1	300	15	18	9.0000
:bb	chr1:19585684-19585995(+)$1	311	12	15	9.0000
lll	chr17:56167687-56167956(+)$1	269	33	36	9.0000
dd!	chr8:21863840-21864100(+)$1	260	13	16	9.0000
{EE	chr1:183521880-183522158(+)$1	278	117	120	9.0000
LBB	chr21:46396551-46396835(+)$1	284	11	14	9.0000
:dd	chr7:935128-935381(+)$1	253	50	53	9.0000
:DD	chr5:140895647-140895937(-)$1	290	0	3	9.0000
:cc	chr7:65619235-65619458(+)$1	223	3	6	9.0000
2a]	chr17:37075090-37075317(+)$1	227	39	42	9.0000
c]d	chr17:37076366-37076621(+)$1	255	35	38	9.0000
qqq	chr12:121136506-121136750(+)$1	244	101	104	9.0000
F{D	chr10:102122982-102123237(+)$1	255	75	78	9.0000
ooo	chr9:130869960-130870251(+)$1	291	44	47	9.0000
:::	chr16:74656131-74656460(-)$1	329	4	7	9.0000
"bb	chr20:61920036-61920307(+)$1	271	8	11	9.0000
:::	chr22:21802758-21803036(+)$1	278	56	59	9.0000
ddd	chr1:33239691-33239943(+)$1	252	10	13	9.0000
[ee	chr1:27731831-27732098(-)$1	267	39	42	9.0000
d]b	chr11:75283618-75283870(+)$1	252	149	152	9.0000
ccc	chr17:73885056-73885345(-)$1	289	61	64	9.0000
mmm	chr1:156220203-156220476(-)$1	273	22	25	9.0000
gg[	chr19:8468333-8468646(+)$1	313	6	9	9.0000
D}F	chr1:11847046-11847294(-)$1	248	190	193	9.0000
ddd	chr21:46270311-46270685(-)$1	374	27	30	9.0000
EEE	chr5:154194106-154194330(+)$1	224	99	102	9.0000
b]a	chr19:1582518-1582758(-)$1	240	91	94	9.0000
D{F	chr14:75202722-75202954(+)$1	232	3	6	9.0000
ggg	chr1:36067997-36068217(-)$1	220	39	42	9.0000
qbb	chr19:55998518-55998769(+)$1	251	90	93	9.0000
eee	chr6:42046709-42046962(+)$1	253	22	25	9.0000
ccc	chr11:61634398-61634658(+)$1	260	70	73	9.0000
vbb	chr1:15755369-15755620(+)$1	251	39	42	9.0000
)bb	chr19:8468948-8469199(+)$1	251	13	16	9.0000
ZCC	chr12:117467527-117467814(+)$1	287	85	88	9.0000
=22	chr22:24968307-24968583(+)$1	276	148	151	9.0000
[dd	chr15:64977033-64977293(+)$1	260	134	137	9.0000
III	chr3:126753126-126753399(+)$1	273	5	8	9.0000
:GG	chr19:18474930-18475190(+)$1	260	9	12	9.0000
h[c	chr7:44253298-44253625(+)$1	327	67	70	9.0000
fff	chr17:37077226-37077478(+)$1	252	44	47	9.0000
:ee	chr17:76670787-76671061(-)$1	274	25	28	9.0000
:::	chr16:1750413-1750668(+)$1	255	1	4	9.0000
:::	chr21:47609112-47609365(-)$1	253	8	11	9.0000
:::	chr19:6414496-6414798(-)$1	302	57	60	9.0000
CC:	chr14:75202340-75202562(+)$1	222	7	10	9.0000
ddd	chr20:60709625-60709882(+)$1	257	10	13	9.0000
cc[	chr9:139820524-139820789(+)$1	265	24	27	9.0000
===	chr19:1592526-1592792(-)$1	266	183	186	9.0000
[cc	chr1:38174119-38174377(+)$1	258	60	63	9.0000
ggg	chr19:1577351-1577650(-)$1	299	11	14	9.0000
ooo	chr1:11849144-11849419(-)$1	275	14	17	9.0000
:cc	chr17:43002229-43002532(-)$1	303	13	16	9.0000
qqq	chr11:1774133-1774432(-)$1	299	116	119	9.0000
bb"	chr9:33111913-33112179(-)$1	266	14	17	9.0000
ccc	chr8:11700171-11700418(-)$1	247	117	120	9.0000
[cc	chr2:219139172-219139429(-)$1	257	31	34	9.0000
a]c	chr17:40462700-40463009(+)$1	309	22	25	9.0000
FYY	chr17:46137334-46137607(+)$1	273	267	270	9.0000
:FF	chr1:11849915-11850155(-)$1	240	8	11	9.0000
[cc	chr16:2507412-2507687(+)$1	275	20	23	9.0000
eeD	chr8:41510976-41511232(-)$1	256	103	106	9.0000
KCC	chr15:70341710-70341952(-)$1	242	47	50	9.0000
:DD	chr9:136209122-136209378(-)$1	256	0	3	9.0000
:::	chr2:47130421-47130676(-)$1	255	104	107	9.0000
fff	chr9:137023885-137024191(+)$1	306	24	27	9.0000
::d	chr17:76106405-76106645(-)$1	240	1	4	9.0000
eee	chr20:32233938-32234202(+)$1	264	113	116	9.0000
EEE	chr12:50493856-50494106(+)$1	250	0	3	9.0000
::B	chr19:47112792-47113013(+)$1	221	1	4	9.0000
CC{	chr16:31501591-31501871(-)$1	280	48	51	9.0000
DDD	chr5:79923190-79923452(-)$1	262	208	211	9.0000
BBB	chr3:128211718-128211944(+)$1	226	92	95	9.0000
EEE	chr21:47610226-47610510(-)$1	284	6	9	9.0000
c[i	chr22:22276220-22276511(-)$1	291	18	21	9.0000
CCL	chr1:31342491-31342746(-)$1	255	21	24	9.0000
eee	chr17:46137246-46137534(+)$1	288	25	28	9.0000
b[e	chr1:55530025-55530287(+)$1	262	35	38	9.0000
hhh	chr1:27733492-27733750(-)$1	258	43	46	9.0000
fff	chr15:58246093-58246380(-)$1	287	25	28	9.0000
:FF	chr11:118915750-118916034(-)$1	284	19	22	9.0000
FFF	chr14:103602256-103602512(+)$1	256	68	71	9.0000
b[c	chr1:17733515-17733748(-)$1	233	21	24	9.0000
g]b	chr19:11256541-11256771(-)$1	230	18	21	9.0000
FFF	chr3:50644328-50644624(-)$1	296	63	66	9.0000
mdd	chr12:56365648-56365905(+)$1	257	11	14	9.0000
5ee	chr10:104240340-104240621(-)$1	281	75	78	9.0000
eee	chr10:72521210-72521472(+)$1	262	28	31	9.0000
###	chr7:73609959-73610255(+)$1	296	16	19	9.0000
eee	chr19:40739091-40739350(-)$1	259	0	3	9.0000
Gff	chr11:767672-767951(-)$1	279	21	24	9.0000
eea	chr17:3828484-3828747(-)$1	263	79	82	9.0000
FFF	chr19:2430099-2430348(-)$1	249	11	14	9.0000
333	chr17:56167314-56167565(+)$1	251	32	35	9.0000
ooo	chr3:47894044-47894327(-)$1	283	68	71	9.0000
{EE	chr19:2754942-2755244(-)$1	302	114	117	9.0000

#DB
(((	chr16:29679094-29679321(+)$1	1	54	57	9.0000
)).	chr11:31453171-31453435(+)$1	1	66	69	9.0000
...	chr19:18977582-18977882(+)$1	1	15	18	9.0000
.((	chr1:19585684-19585995(+)$1	1	12	15	9.0000
...	chr17:56167687-56167956(+)$1	1	33	36	9.0000
((.	chr8:21863840-21864100(+)$1	1	13	16	9.0000
.((	chr1:183521880-183522158(+)$1	1	117	120	9.0000
.((	chr21:46396551-46396835(+)$1	1	11	14	9.0000
.((	chr7:935128-935381(+)$1	1	50	53	9.0000
.((	chr5:140895647-140895937(-)$1	1	0	3	9.0000
.((	chr7:65619235-65619458(+)$1	1	3	6	9.0000
.).	chr17:37075090-37075317(+)$1	1	39	42	9.0000
).)	chr17:37076366-37076621(+)$1	1	35	38	9.0000
...	chr12:121136506-121136750(+)$1	1	101	104	9.0000
(.(	chr10:102122982-102123237(+)$1	1	75	78	9.0000
...	chr9:130869960-130870251(+)$1	1	44	47	9.0000
...	chr16:74656131-74656460(-)$1	1	4	7	9.0000
.((	chr20:61920036-61920307(+)$1	1	8	11	9.0000
...	chr22:21802758-21803036(+)$1	1	56	59	9.0000
(((	chr1:33239691-33239943(+)$1	1	10	13	9.0000
.((	chr1:27731831-27732098(-)$1	1	39	42	9.0000
).)	chr11:75283618-75283870(+)$1	1	149	152	9.0000
)))	chr17:73885056-73885345(-)$1	1	61	64	9.0000
...	chr1:156220203-156220476(-)$1	1	22	25	9.0000
((.	chr19:8468333-8468646(+)$1	1	6	9	9.0000
).)	chr1:11847046-11847294(-)$1	1	190	193	9.0000
)))	chr21:46270311-46270685(-)$1	1	27	30	9.0000
)))	chr5:154194106-154194330(+)$1	1	99	102	9.0000
).)	chr19:1582518-1582758(-)$1	1	91	94	9.0000
(.(	chr14:75202722-75202954(+)$1	1	3	6	9.0000
(((	chr1:36067997-36068217(-)$1	1	39	42	9.0000
.))	chr19:55998518-55998769(+)$1	1	90	93	9.0000
(((	chr6:42046709-42046962(+)$1	1	22	25	9.0000
(((	chr11:61634398-61634658(+)$1	1	70	73	9.0000
.))	chr1:15755369-15755620(+)$1	1	39	42	9.0000
.((	chr19:8468948-8469199(+)$1	1	13	16	9.0000
.))	chr12:117467527-117467814(+)$1	1	85	88	9.0000
)..	chr22:24968307-24968583(+)$1	1	148	151	9.0000
.((	chr15:64977033-64977293(+)$1	1	134	137	9.0000
(((	chr3:126753126-126753399(+)$1	1	5	8	9.0000
.((	chr19:18474930-18475190(+)$1	1	9	12	9.0000
(.(	chr7:44253298-44253625(+)$1	1	67	70	9.0000
)))	chr17:37077226-37077478(+)$1	1	44	47	9.0000
.((	chr17:76670787-76671061(-)$1	1	25	28	9.0000
...	chr16:1750413-1750668(+)$1	1	1	4	9.0000
...	chr21:47609112-47609365(-)$1	1	8	11	9.0000
...	chr19:6414496-6414798(-)$1	1	57	60	9.0000
((.	chr14:75202340-75202562(+)$1	1	7	10	9.0000
(((	chr20:60709625-60709882(+)$1	1	10	13	9.0000
((.	chr9:139820524-139820789(+)$1	1	24	27	9.0000
(((	chr19:1592526-1592792(-)$1	1	183	186	9.0000
.((	chr1:38174119-38174377(+)$1	1	60	63	9.0000
(((	chr19:1577351-1577650(-)$1	1	11	14	9.0000
...	chr1:11849144-11849419(-)$1	1	14	17	9.0000
.((	chr17:43002229-43002532(-)$1	1	13	16	9.0000
...	chr11:1774133-1774432(-)$1	1	116	119	9.0000
((.	chr9:33111913-33112179(-)$1	1	14	17	9.0000
(((	chr8:11700171-11700418(-)$1	1	117	120	9.0000
.((	chr2:219139172-219139429(-)$1	1	31	34	9.0000
).)	chr17:40462700-40463009(+)$1	1	22	25	9.0000
)..	chr17:46137334-46137607(+)$1	1	267	270	9.0000
.((	chr1:11849915-11850155(-)$1	1	8	11	9.0000
.((	chr16:2507412-2507687(+)$1	1	20	23	9.0000
)))	chr8:41510976-41511232(-)$1	1	103	106	9.0000
.((	chr15:70341710-70341952(-)$1	1	47	50	9.0000
.((	chr9:136209122-136209378(-)$1	1	0	3	9.0000
...	chr2:47130421-47130676(-)$1	1	104	107	9.0000
(((	chr9:137023885-137024191(+)$1	1	24	27	9.0000
..(	chr17:76106405-76106645(-)$1	1	1	4	9.0000
(((	chr20:32233938-32234202(+)$1	1	113	116	9.0000
(((	chr12:50493856-50494106(+)$1	1	0	3	9.0000
..(	chr19:47112792-47113013(+)$1	1	1	4	9.0000
((.	chr16:31501591-31501871(-)$1	1	48	51	9.0000
)))	chr5:79923190-79923452(-)$1	1	208	211	9.0000
(((	chr3:128211718-128211944(+)$1	1	92	95	9.0000
(((	chr21:47610226-47610510(-)$1	1	6	9	9.0000
(.(	chr22:22276220-22276511(-)$1	1	18	21	9.0000
((.	chr1:31342491-31342746(-)$1	1	21	24	9.0000
(((	chr17:46137246-46137534(+)$1	1	25	28	9.0000
(.(	chr1:55530025-55530287(+)$1	1	35	38	9.0000
)))	chr1:27733492-27733750(-)$1	1	43	46	9.0000
)))	chr15:58246093-58246380(-)$1	1	25	28	9.0000
.((	chr11:118915750-118916034(-)$1	1	19	22	9.0000
(((	chr14:103602256-103602512(+)$1	1	68	71	9.0000
(.(	chr1:17733515-17733748(-)$1	1	21	24	9.0000
).)	chr19:11256541-11256771(-)$1	1	18	21	9.0000
(((	chr3:50644328-50644624(-)$1	1	63	66	9.0000
.))	chr12:56365648-56365905(+)$1	1	11	14	9.0000
.))	chr10:104240340-104240621(-)$1	1	75	78	9.0000
(((	chr10:72521210-72521472(+)$1	1	28	31	9.0000
...	chr7:73609959-73610255(+)$1	1	16	19	9.0000
(((	chr19:40739091-40739350(-)$1	1	0	3	9.0000
(((	chr11:767672-767951(-)$1	1	21	24	9.0000
(((	chr17:3828484-3828747(-)$1	1	79	82	9.0000
(((	chr19:2430099-2430348(-)$1	1	11	14	9.0000
...	chr17:56167314-56167565(+)$1	1	32	35	9.0000
...	chr3:47894044-47894327(-)$1	1	68	71	9.0000
.((	chr19:2754942-2755244(-)$1	1	114	117	9.0000

#PSSM
U : 0.79	u : 0.20	
G : 0.79	g : 0.20	
C : 0.79	c : 0.20	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_UTR_m2_run1.nuc.txt

#NT
CUAGCCAUGAAGUGGAUGAUCACUGAGUGCCGGGAUAAAAAGCACCAGCGGACACUGAUGCCGGAGAAGCUGUCACACAAGCUGCUGGAGGCUUUCCAUAACCAGGGCCCCGUGAUCAAGAGGAAGCAUGACUUGCACAAGAUGGCAGAGGCCAACCGUGCCCUGGCCCACUACCGCUGGUGGUAGAGUCUCCAGGAGGAGCCCAGGGCCCUCUGCCGCAAGAAACAGUGUGAGCUACUGCCACGCUGAAAACUACCUGUGGGUUAAGGAUGUAGUUCCUUUGUAAGGGUGGGCAGGCCUCGUAAGAAAGAUGUAG	chr17:73261804-73262138(+)$1	334	14	330	390.5000

#otherMatches

#Struct PSSM
:::::eeeeellleeeee::::::DDDD{BB::ffffff[bbmmmmbbffffff:::::EEEEEMMMMFFFFFF{A{BB{EEEEE::eeeeecccmmmmccc]eeeee::bb[eeeeeeeeee"""eeeeellleeeeeeeeee22eeeee]bb:hhhhhhhh[a!!a"""ddddqqqqqqqqdddd22a22a]hhhhhhhh:hhhhhhhhlllhhhhhhhh:::::::::::::::ffffff[ccc[bbqqqqqqqqbb]ccc]ffffff::::::EEEEE}BB}AFFFFFFYYEEEEE@@@@@@@@@@BB}DDD	chr12:132195744-132196065(+)$1	321	3	319	390.5000
GG::ddddllldddd:ggggggg[a[a[ccc[bb[bb[eeeee[ggggggg####bb[bb[cccnnnnnccc]bbbb4444ggggggg22eeeee333bb]bb22cccaa]ggggggg::GGGGGGG::::EEEEEPPPPPPPHHHHHHHHQQQQQQQQGGGGGGG:ffffffmmmmffffff::::a[ddddmmmmddddaGGGGGGGHHHHHHHHEEEEE:::ggggggg[bbmmmmbbggggggg::::ffffff&&&&&&&eeeeeooooooeeeee55555ffffff:::CCCYYCCC:::::::::::::	chr17:73261804-73262138(+)$1	334	14	330	390.5000

#DB
.....(((((...)))))......((((.((..((((((.((....)))))))).....(((((....((((((.(.((.(((((..((((((((....))).)))))..((.((((((((((...(((((...))))))))))..))))).)).((((((((.(..(...((((........))))..)..).)))))))).((((((((...))))))))...............((((((.(((.((........)).))).))))))......))))).)).)))))))..)))))..........)).)))	chr12:132195744-132196065(+)$1	1	3	319	390.5000
((..((((...)))).(((((((.(.(.(((.((.((.(((((.(((((((....((.((.(((.....))).))))....)))))))..)))))...)).))..))))).)))))))..)))))))....(((((.......((((((((........(((((((.((((((....))))))....(.((((....)))))))))))))))))))))))))...(((((((.((....)))))))))....((((((.......(((((......))))).....))))))...)))..))).............	chr17:73261804-73262138(+)$1	1	14	330	390.5000

#PSSM
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	

#score	781.0
#seq	2
#width	316
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_UTR_m1_run1.nuc.txt

#NT
GGCC	chr9:117027595-117027852(+)$1	257	64	68	11.9999
GGCC	chr17:4850017-4850271(-)$1	254	225	229	11.9999
GGCC	chr15:101825896-101826152(-)$1	256	190	194	11.9999
GGCC	chr7:2582848-2583104(-)$1	256	34	38	11.9999
GGCC	chr3:52324826-52325085(+)$1	259	22	26	11.9999
GGCC	chr17:73805669-73805959(+)$1	290	77	81	11.9999
GGCC	chr16:24815338-24815601(+)$1	263	236	240	11.9999
GGCC	chr17:4793640-4793906(+)$1	266	128	132	11.9999
GGCC	chr19:7711908-7712173(+)$1	265	54	58	11.9999
GGCC	chr9:131772371-131772636(-)$1	265	147	151	11.9999
GGCC	chr9:35738517-35738791(-)$1	274	29	33	11.9999
ggcc	chr12:122237764-122238015(-)$1	251	16	20	11.9999
GGCC	chr7:5434121-5434384(-)$1	263	31	35	11.9999
GGCC	chr16:532375-532631(+)$1	256	67	71	11.9999
GGCC	chr22:42298821-42299096(+)$1	275	74	78	11.9999
GGCC	chr16:31098901-31099183(-)$1	282	76	80	11.9999
GGCC	chr17:72768087-72768373(-)$1	286	54	58	11.9999
GGCC	chr3:50617666-50617913(+)$1	247	44	48	11.9999
GGCC	chr17:1674957-1675268(+)$1	311	38	42	11.9999
GGCC	chr3:38178065-38178316(-)$1	251	204	208	11.9999
GGCC	chr18:683242-683546(-)$1	304	18	22	11.9999
GGCC	chr17:56283640-56283874(-)$1	234	60	64	11.9999
GGCC	chr2:220077684-220077933(-)$1	249	85	89	11.9999
GGCC	chr14:24652247-24652515(-)$1	268	22	26	11.9999
GGCC	chr19:41773970-41774220(+)$1	250	133	137	11.9999
GGCC	chr1:245025931-245026172(-)$1	241	111	115	11.9999
GGCC	chr9:140347149-140347415(-)$1	266	108	112	11.9999
GGCC	chr1:19212013-19212266(-)$1	253	17	21	11.9999
GGCC	chr17:48627401-48627675(+)$1	274	5	9	11.9999
GGCC	chr20:62331781-62332023(-)$1	242	49	53	11.9999
GGCC	chr11:67821406-67821665(-)$1	259	19	23	11.9999
GGCC	chr17:8168056-8168368(+)$1	312	0	4	11.9999
GGCC	chr16:16259669-16259964(-)$1	295	61	65	11.9999
GGCC	chr2:101619017-101619268(+)$1	251	6	10	11.9999
GGCC	chr17:27075378-27075640(+)$1	262	67	71	11.9999
GGCC	chr14:24911525-24911779(-)$1	254	174	178	11.9999
GGCC	chr16:84215362-84215619(-)$1	257	76	80	11.9999
GGCC	chr22:50686620-50686863(-)$1	243	30	34	11.9999
GGCC	chr17:56082846-56083115(-)$1	269	188	192	11.9999
GGCC	chr11:64815104-64815395(-)$1	291	4	8	11.9999
GGCC	chr22:20114309-20114568(+)$1	259	30	34	11.9999
GGCC	chr17:80442527-80442801(+)$1	274	245	249	11.9999
GGCC	chr2:216211336-216211587(+)$1	251	26	30	11.9999
GGCC	chr11:57561329-57561607(+)$1	278	38	42	11.9999
GGCC	chr16:30205903-30206163(+)$1	260	18	22	11.9999
GGCC	chr5:881171-881441(-)$1	270	15	19	11.9999
GGCC	chr1:21100004-21100277(-)$1	273	261	265	11.9999
GGCC	chr2:217363830-217364088(+)$1	258	110	114	11.9999
GGCC	chr22:46752581-46752846(+)$1	265	68	72	11.9999
GGCC	chr20:62572509-62572775(-)$1	266	83	87	11.9999
GGCC	chr17:18148871-18149116(-)$1	245	63	67	11.9999
GGCC	chr5:179048268-179048509(-)$1	241	220	224	11.9999
GGCC	chr9:140346787-140347045(-)$1	258	55	59	11.9999
GGCC	chr17:46053088-46053342(+)$1	254	53	57	11.9999
GGCC	chr20:62338444-62338697(-)$1	253	7	11	11.9999
GGCC	chr20:1426352-1426622(-)$1	270	103	107	11.9999
GGCC	chrX:30746686-30746987(+)$1	301	11	15	11.9999
GGCC	chr7:76955422-76955742(-)$1	320	152	156	11.9999
GGCC	chr12:46752009-46752268(-)$1	259	191	195	11.9999
GGCC	chr7:1588210-1588447(-)$1	237	4	8	11.9999
GGCC	chr9:138773525-138773781(-)$1	256	49	53	11.9999
GGCC	chr16:22336932-22337189(+)$1	257	149	153	11.9999
GGCC	chr2:97533512-97533799(-)$1	287	44	48	11.9999
GGCC	chr16:2818837-2819116(+)$1	279	94	98	11.9999
GGCC	chr10:43891927-43892188(-)$1	261	20	24	11.9999
ggcc	chr11:67074691-67074958(+)$1	267	3	7	11.9999
GGCC	chr3:48670945-48671235(-)$1	290	15	19	11.9999
GGCC	chr22:32003762-32004049(+)$1	287	64	68	11.9999
GGCC	chr2:128047297-128047564(-)$1	267	17	21	11.9999
GGCC	chr16:88723874-88724173(-)$1	299	2	6	11.9999
GGCC	chr9:117005682-117005930(+)$1	248	29	33	11.9999
GGCC	chr17:80394883-80395150(+)$1	267	1	5	11.9999
GGCC	chr19:45573131-45573433(+)$1	302	37	41	11.9999
GGCC	chr4:887691-887951(-)$1	260	63	67	11.9999
GGCC	chr14:103574552-103574839(+)$1	287	188	192	11.9999
GGCC	chr17:76200747-76201030(+)$1	283	37	41	11.9999
GGCC	chr16:88876021-88876280(-)$1	259	61	65	11.9999
GGCC	chr11:722530-722777(+)$1	247	12	16	11.9999
GGCC	chr7:155556356-155556621(+)$1	265	182	186	11.9999
GGCC	chr1:160188651-160188930(-)$1	279	45	49	11.9999
GGCC	chr17:79917330-79917588(-)$1	258	99	103	11.9999
GGCC	chr17:80559023-80559302(+)$1	279	6	10	11.9999
ggcc	chr16:3729732-3729974(-)$1	242	22	26	11.9999
GGCC	chr8:145690353-145690632(-)$1	279	8	12	11.9999
GGCC	chr14:20920152-20920461(-)$1	309	152	156	11.9999
GGCC	chr3:48731576-48731827(-)$1	251	117	121	11.9999
GGCC	chr7:44091278-44091535(+)$1	257	72	76	11.9999
GGCC	chr7:150774384-150774630(-)$1	246	21	25	11.9999
GGCC	chr2:241569181-241569477(+)$1	296	231	235	11.9999
GGCC	chr9:131184999-131185257(+)$1	258	239	243	11.9999

#otherMatches

#Struct PSSM
HH}C	chr22:22313508-22313753(-)$1	245	189	193	11.9999
dddd	chr9:117027595-117027852(+)$1	257	64	68	11.9999
[ccc	chr17:4850017-4850271(-)$1	254	225	229	11.9999
iiii	chr15:101825896-101826152(-)$1	256	190	194	11.9999
ddd[	chr7:2582848-2583104(-)$1	256	34	38	11.9999
DDD{	chr3:52324826-52325085(+)$1	259	22	26	11.9999
eeef	chr17:73805669-73805959(+)$1	290	77	81	11.9999
rrrr	chr16:24815338-24815601(+)$1	263	236	240	11.9999
eenn	chr17:4793640-4793906(+)$1	266	128	132	11.9999
]ccc	chr19:7711908-7712173(+)$1	265	54	58	11.9999
[bb[	chr9:131772371-131772636(-)$1	265	147	151	11.9999
eeee	chr9:35738517-35738791(-)$1	274	29	33	11.9999
DDDD	chr12:122237764-122238015(-)$1	251	16	20	11.9999
g]bb	chr7:5434121-5434384(-)$1	263	31	35	11.9999
eee2	chr16:532375-532631(+)$1	256	67	71	11.9999
ddff	chr22:42298821-42299096(+)$1	275	74	78	11.9999
====	chr16:31098901-31099183(-)$1	282	76	80	11.9999
nnnd	chr17:72768087-72768373(-)$1	286	54	58	11.9999
EEEE	chr3:50617666-50617913(+)$1	247	44	48	11.9999
cccm	chr17:1674957-1675268(+)$1	311	38	42	11.9999
dddd	chr3:38178065-38178316(-)$1	251	204	208	11.9999
ffff	chr18:683242-683546(-)$1	304	18	22	11.9999
FFFF	chr17:56283640-56283874(-)$1	234	60	64	11.9999
fffr	chr2:220077684-220077933(-)$1	249	85	89	11.9999
eeee	chr14:24652247-24652515(-)$1	268	22	26	11.9999
EEEE	chr19:41773970-41774220(+)$1	250	133	137	11.9999
lggg	chr1:245025931-245026172(-)$1	241	111	115	11.9999
JJJJ	chr9:140347149-140347415(-)$1	266	108	112	11.9999
gggg	chr1:19212013-19212266(-)$1	253	17	21	11.9999
eddd	chr17:48627401-48627675(+)$1	274	5	9	11.9999
::hh	chr20:62331781-62332023(-)$1	242	49	53	11.9999
ggnn	chr11:67821406-67821665(-)$1	259	19	23	11.9999
:::C	chr17:8168056-8168368(+)$1	312	0	4	11.9999
E{BB	chr16:16259669-16259964(-)$1	295	61	65	11.9999
eeee	chr2:101619017-101619268(+)$1	251	6	10	11.9999
nnnn	chr17:27075378-27075640(+)$1	262	67	71	11.9999
ggdd	chr14:24911525-24911779(-)$1	254	174	178	11.9999
xxxx	chr16:84215362-84215619(-)$1	257	76	80	11.9999
ccc[	chr22:50686620-50686863(-)$1	243	30	34	11.9999
eeeo	chr17:56082846-56083115(-)$1	269	188	192	11.9999
FFFF	chr11:64815104-64815395(-)$1	291	4	8	11.9999
[ggg	chr22:20114309-20114568(+)$1	259	30	34	11.9999
]ggg	chr17:80442527-80442801(+)$1	274	245	249	11.9999
ebb$	chr2:216211336-216211587(+)$1	251	26	30	11.9999
{CCC	chr11:57561329-57561607(+)$1	278	38	42	11.9999
eeee	chr16:30205903-30206163(+)$1	260	18	22	11.9999
llld	chr5:881171-881441(-)$1	270	15	19	11.9999
gggg	chr1:21100004-21100277(-)$1	273	261	265	11.9999
eeee	chr2:217363830-217364088(+)$1	258	110	114	11.9999
eeea	chr22:46752581-46752846(+)$1	265	68	72	11.9999
CCCK	chr20:62572509-62572775(-)$1	266	83	87	11.9999
JJJJ	chr17:18148871-18149116(-)$1	245	63	67	11.9999
CEEE	chr5:179048268-179048509(-)$1	241	220	224	11.9999
EEE{	chr9:140346787-140347045(-)$1	258	55	59	11.9999
H::f	chr17:46053088-46053342(+)$1	254	53	57	11.9999
eeee	chr20:62338444-62338697(-)$1	253	7	11	11.9999
CCC}	chr20:1426352-1426622(-)$1	270	103	107	11.9999
cccl	chrX:30746686-30746987(+)$1	301	11	15	11.9999
fff:	chr7:76955422-76955742(-)$1	320	152	156	11.9999
ehhh	chr12:46752009-46752268(-)$1	259	191	195	11.9999
FFFF	chr7:1588210-1588447(-)$1	237	4	8	11.9999
DDDA	chr9:138773525-138773781(-)$1	256	49	53	11.9999
dd33	chr16:22336932-22337189(+)$1	257	149	153	11.9999
vvvv	chr2:97533512-97533799(-)$1	287	44	48	11.9999
qqqq	chr16:2818837-2819116(+)$1	279	94	98	11.9999
!a!!	chr10:43891927-43892188(-)$1	261	20	24	11.9999
GGGG	chr11:67074691-67074958(+)$1	267	3	7	11.9999
GG::	chr3:48670945-48671235(-)$1	290	15	19	11.9999
cccd	chr22:32003762-32004049(+)$1	287	64	68	11.9999
EEEE	chr2:128047297-128047564(-)$1	267	17	21	11.9999
EEEE	chr16:88723874-88724173(-)$1	299	2	6	11.9999
ccc[	chr9:117005682-117005930(+)$1	248	29	33	11.9999
DDDE	chr17:80394883-80395150(+)$1	267	1	5	11.9999
ffdd	chr19:45573131-45573433(+)$1	302	37	41	11.9999
fHHH	chr4:887691-887951(-)$1	260	63	67	11.9999
ffff	chr14:103574552-103574839(+)$1	287	188	192	11.9999
eeee	chr17:76200747-76201030(+)$1	283	37	41	11.9999
BLLL	chr16:88876021-88876280(-)$1	259	61	65	11.9999
====	chr11:722530-722777(+)$1	247	12	16	11.9999
gggg	chr7:155556356-155556621(+)$1	265	182	186	11.9999
GG{C	chr1:160188651-160188930(-)$1	279	45	49	11.9999
]bba	chr17:79917330-79917588(-)$1	258	99	103	11.9999
ENNN	chr17:80559023-80559302(+)$1	279	6	10	11.9999
IIII	chr16:3729732-3729974(-)$1	242	22	26	11.9999
D{DD	chr8:145690353-145690632(-)$1	279	8	12	11.9999
ff::	chr14:20920152-20920461(-)$1	309	152	156	11.9999
gggg	chr3:48731576-48731827(-)$1	251	117	121	11.9999
{CCC	chr7:44091278-44091535(+)$1	257	72	76	11.9999
{BBD	chr7:150774384-150774630(-)$1	246	21	25	11.9999
bb::	chr2:241569181-241569477(+)$1	296	231	235	11.9999
5ddd	chr9:131184999-131185257(+)$1	258	239	243	11.9999

#DB
)).)	chr22:22313508-22313753(-)$1	1	189	193	11.9999
((((	chr9:117027595-117027852(+)$1	1	64	68	11.9999
.(((	chr17:4850017-4850271(-)$1	1	225	229	11.9999
))))	chr15:101825896-101826152(-)$1	1	190	194	11.9999
(((.	chr7:2582848-2583104(-)$1	1	34	38	11.9999
(((.	chr3:52324826-52325085(+)$1	1	22	26	11.9999
))))	chr17:73805669-73805959(+)$1	1	77	81	11.9999
....	chr16:24815338-24815601(+)$1	1	236	240	11.9999
((..	chr17:4793640-4793906(+)$1	1	128	132	11.9999
.)))	chr19:7711908-7712173(+)$1	1	54	58	11.9999
.((.	chr9:131772371-131772636(-)$1	1	147	151	11.9999
((((	chr9:35738517-35738791(-)$1	1	29	33	11.9999
((((	chr12:122237764-122238015(-)$1	1	16	20	11.9999
).))	chr7:5434121-5434384(-)$1	1	31	35	11.9999
))).	chr16:532375-532631(+)$1	1	67	71	11.9999
))((	chr22:42298821-42299096(+)$1	1	74	78	11.9999
((((	chr16:31098901-31099183(-)$1	1	76	80	11.9999
...)	chr17:72768087-72768373(-)$1	1	54	58	11.9999
((((	chr3:50617666-50617913(+)$1	1	44	48	11.9999
(((.	chr17:1674957-1675268(+)$1	1	38	42	11.9999
))))	chr3:38178065-38178316(-)$1	1	204	208	11.9999
))))	chr18:683242-683546(-)$1	1	18	22	11.9999
((((	chr17:56283640-56283874(-)$1	1	60	64	11.9999
(((.	chr2:220077684-220077933(-)$1	1	85	89	11.9999
((((	chr14:24652247-24652515(-)$1	1	22	26	11.9999
((((	chr19:41773970-41774220(+)$1	1	133	137	11.9999
.)))	chr1:245025931-245026172(-)$1	1	111	115	11.9999
((((	chr9:140347149-140347415(-)$1	1	108	112	11.9999
((((	chr1:19212013-19212266(-)$1	1	17	21	11.9999
((((	chr17:48627401-48627675(+)$1	1	5	9	11.9999
..((	chr20:62331781-62332023(-)$1	1	49	53	11.9999
((..	chr11:67821406-67821665(-)$1	1	19	23	11.9999
...(	chr17:8168056-8168368(+)$1	1	0	4	11.9999
(.((	chr16:16259669-16259964(-)$1	1	61	65	11.9999
((((	chr2:101619017-101619268(+)$1	1	6	10	11.9999
....	chr17:27075378-27075640(+)$1	1	67	71	11.9999
((((	chr14:24911525-24911779(-)$1	1	174	178	11.9999
....	chr16:84215362-84215619(-)$1	1	76	80	11.9999
(((.	chr22:50686620-50686863(-)$1	1	30	34	11.9999
(((.	chr17:56082846-56083115(-)$1	1	188	192	11.9999
((((	chr11:64815104-64815395(-)$1	1	4	8	11.9999
.(((	chr22:20114309-20114568(+)$1	1	30	34	11.9999
.)))	chr17:80442527-80442801(+)$1	1	245	249	11.9999
(((.	chr2:216211336-216211587(+)$1	1	26	30	11.9999
.(((	chr11:57561329-57561607(+)$1	1	38	42	11.9999
))))	chr16:30205903-30206163(+)$1	1	18	22	11.9999
...)	chr5:881171-881441(-)$1	1	15	19	11.9999
))))	chr1:21100004-21100277(-)$1	1	261	265	11.9999
))))	chr2:217363830-217364088(+)$1	1	110	114	11.9999
))))	chr22:46752581-46752846(+)$1	1	68	72	11.9999
(((.	chr20:62572509-62572775(-)$1	1	83	87	11.9999
((((	chr17:18148871-18149116(-)$1	1	63	67	11.9999
))))	chr5:179048268-179048509(-)$1	1	220	224	11.9999
(((.	chr9:140346787-140347045(-)$1	1	55	59	11.9999
(..(	chr17:46053088-46053342(+)$1	1	53	57	11.9999
((((	chr20:62338444-62338697(-)$1	1	7	11	11.9999
))).	chr20:1426352-1426622(-)$1	1	103	107	11.9999
(((.	chrX:30746686-30746987(+)$1	1	11	15	11.9999
))).	chr7:76955422-76955742(-)$1	1	152	156	11.9999
)(((	chr12:46752009-46752268(-)$1	1	191	195	11.9999
((((	chr7:1588210-1588447(-)$1	1	4	8	11.9999
((((	chr9:138773525-138773781(-)$1	1	49	53	11.9999
))..	chr16:22336932-22337189(+)$1	1	149	153	11.9999
....	chr2:97533512-97533799(-)$1	1	44	48	11.9999
....	chr16:2818837-2819116(+)$1	1	94	98	11.9999
.(..	chr10:43891927-43892188(-)$1	1	20	24	11.9999
((((	chr11:67074691-67074958(+)$1	1	3	7	11.9999
((..	chr3:48670945-48671235(-)$1	1	15	19	11.9999
((((	chr22:32003762-32004049(+)$1	1	64	68	11.9999
((((	chr2:128047297-128047564(-)$1	1	17	21	11.9999
((((	chr16:88723874-88724173(-)$1	1	2	6	11.9999
(((.	chr9:117005682-117005930(+)$1	1	29	33	11.9999
((((	chr17:80394883-80395150(+)$1	1	1	5	11.9999
))))	chr19:45573131-45573433(+)$1	1	37	41	11.9999
)(((	chr4:887691-887951(-)$1	1	63	67	11.9999
((((	chr14:103574552-103574839(+)$1	1	188	192	11.9999
((((	chr17:76200747-76201030(+)$1	1	37	41	11.9999
(...	chr16:88876021-88876280(-)$1	1	61	65	11.9999
((((	chr11:722530-722777(+)$1	1	12	16	11.9999
))))	chr7:155556356-155556621(+)$1	1	182	186	11.9999
((.(	chr1:160188651-160188930(-)$1	1	45	49	11.9999
.)))	chr17:79917330-79917588(-)$1	1	99	103	11.9999
(...	chr17:80559023-80559302(+)$1	1	6	10	11.9999
((((	chr16:3729732-3729974(-)$1	1	22	26	11.9999
(.((	chr8:145690353-145690632(-)$1	1	8	12	11.9999
))..	chr14:20920152-20920461(-)$1	1	152	156	11.9999
((((	chr3:48731576-48731827(-)$1	1	117	121	11.9999
.(((	chr7:44091278-44091535(+)$1	1	72	76	11.9999
.(((	chr7:150774384-150774630(-)$1	1	21	25	11.9999
))..	chr2:241569181-241569477(+)$1	1	231	235	11.9999
.)))	chr9:131184999-131185257(+)$1	1	239	243	11.9999

#PSSM
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
C : 0.96	c : 0.03	
C : 0.96	c : 0.03	

#score	1091.9999999999995
#seq	91
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_transcript_m3_run2.nuc.txt

#NT
AUGGGGAAGGAGAGACUGUUGACUGGUGUGAAAAGUGUUGCUGGGGCCCCUUCUGAGGGGCUUAUCUUGCCAUUUCUUCAUGUCCUCUUGCAGGCGAGGUGUCCAGGCCCAACCCCUCAAUGUAGGCUUCUGUGAGCAGGAGUUUGAACAGACCUGAGCCCCAGGCACCGAGGAGGGUGCUGGCUGUAGGUGAAUGGUAGUGGAGCCAGGCUUCCACUGCAUCCUGGCCAGGGGACGGAGCCCCUUGCCUUCGUGCCCCUUGCCUGCGUGCCCCUGUGCUUGGAGAGAAAGGGGCCGGUGCUGGCGCUCGCAUUCAAUAAAGAGUAAUGUGGCAUUUUUCUAUAAUAAACAUGGAUUACCUGUGUUUAAAAAAAAAAGUGUGAAUGGCGUUAGGGUA	chr15:72636166-72636582(-)$1	416	8	405	476.0000

#otherMatches

#Struct PSSM
:FFFFFFLLLBB::bbpppppppbb:bb[a[eeeee[ccc[bb&&&&&&&ggggggglllggggggg]bbccc]eeeee]a]bb:::ggggggguuuuuuuuuuuugggggggCCC{FFFFFF{BBeeeeemmmmeeeee:gggggggnnnnnggggggg::::BB}FFFFFF}CCC:::GGGGGGGBB{EEEEE{CCCKKCCCCCCccc"""ccc!!a[dddd[bbffffffmmmmffffff4444bb22dddd]a22ccc22ccc::eeeee!!eeeee$$$$$eeeee"""ddddmmmmdddd4444eeeee55555eeeeeeeeee:::::::dddd[aqqqqqqqqa]ddddCCC}CCCCCC}EEEEE}BB}GGGGGGGBBYYFFFFFF:::	chr17:18148203-18148601(-)$1	398	0	397	476.0000
ooobbbbEEEEE{CCCBBKKBB{DDDDKKBB::ccclllccc:hhhhhhhhmmmmhhhhhhhh:BBYYDDDDYYBBYYBB}CCCEEEEEA{HHHHHHHHOOOOOOCCCBBKKEEEEE:::::==========mmmm==========:::::eeeeedddd"""ffffffooooooffffffdddd]eeeee:::::hhhhhhhhbblllbb]hhhhhhhh:::::::::EEEEEYYBB}CCCHHHHHHHH}AFFFFFF{EEEEE::bb[ffffff"""ccclllccc22ffffffbb:::HHHHHHHHffffffaqqqqqqqqa]ffffffhhhhhhhh%%%%%%iiiiiiiiinnnnniiiiiiiii55555hhhhhhhh::::HHHHHHHHEEEE	chr15:72636166-72636582(-)$1	416	8	405	476.0000

#DB
.((((((...((..((.......)).((.(.(((((.(((.((.......(((((((...))))))).))))).))))).).))...(((((((............)))))))(((.((((((.(((((((....))))).(((((((.....)))))))....)).)))))).)))...(((((((((.(((((.(((..(((((((((...(((..(.((((.((((((((....))))))....))..)))).)..)))..)))..(((((..(((((.....(((((...((((....))))....))))).....)))))))))).......((((.(........).))))))).)))))).))))).)).)))))))))..))))))...	chr17:18148203-18148601(-)$1	1	0	397	476.0000
...))))(((((.(((((..((.((((..((..(((...))).((((((((....)))))))).))..))))..))..)).))))))))(.((((((((......(((((..(((((.....((((((((((....)))))))))).....(((((((((...((((((......)))))))))).))))).....((((((((((...)).)))))))).........)))))..)).))))))))))).)((((((.(((((..((.((((((...(((...)))..))))))))...(((((((((((((((........).))))))((((((((......(((((((((.....))))))))).....))))))))....))))))))))))	chr15:72636166-72636582(-)$1	1	8	405	476.0000

#PSSM
C : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	

#score	952.0
#seq	2
#width	397
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_CDS_m1_run2.nuc.txt

#NT
AGGAGG	chr6:144780004-144780245(+)$1	241	66	72	13.7317
AGGAGA	chr1:19511535-19511759(-)$1	224	15	21	16.0487
AGGAGC	chr14:21546253-21546522(+)$1	269	143	149	13.6097
AGGAGC	chr1:156252367-156252624(-)$1	257	1	7	13.6097
AGGAGA	chr16:30745155-30745406(+)$1	251	82	88	16.0487
AGGAGA	chr1:39759072-39759392(+)$1	320	269	275	16.0487
AGGAGA	chr19:19136331-19136600(-)$1	269	0	6	16.0487
AGGAGA	chr1:18023662-18023931(+)$1	269	70	76	16.0487
AGGAGC	chr12:112699013-112699299(-)$1	286	64	70	13.6097
AGGAGA	chr10:19620197-19620417(+)$1	220	135	141	16.0487
AGGAGA	chrY:21869356-21869610(-)$1	254	6	12	16.0487
AGGAGG	chr9:114192746-114193000(-)$1	254	44	50	13.7317
AGGAGA	chr17:78319551-78319781(+)$1	230	178	184	16.0487
AGGAGA	chr16:2814725-2814960(+)$1	235	112	118	16.0487
AGGAGA	chr8:103298548-103298809(-)$1	261	63	69	16.0487
AGGAGA	chr6:90402669-90402914(-)$1	245	148	154	16.0487
AGGAGA	chr10:19636630-19636881(+)$1	251	120	126	16.0487
AGGAGU	chr16:70697892-70698155(-)$1	263	169	175	13.6097
AGGAGG	chr9:134334507-134334835(+)$1	328	59	65	13.7317
AGGAGA	chr12:26868978-26869244(-)$1	266	77	83	16.0487
AGGAGU	chr1:19483273-19483516(-)$1	243	61	67	13.6097
AGGAGA	chr2:216296455-216296741(-)$1	286	101	107	16.0487
AGGAGA	chr10:79613018-79613260(-)$1	242	114	120	16.0487
AGGAGA	chr1:39852951-39853244(+)$1	293	63	69	16.0487
AGGAGA	chr2:218712525-218712770(-)$1	245	13	19	16.0487
AGGAGA	chr17:35605421-35605643(-)$1	222	192	198	16.0487
AGGAGA	chr19:39966655-39966900(+)$1	245	177	183	16.0487
AGGAGA	chr1:12316943-12317210(+)$1	267	146	152	16.0487
AGGAGU	chr19:57326647-57326911(-)$1	264	16	22	13.6097
AGGAGC	chr16:72984705-72984941(-)$1	236	131	137	13.6097
AGGAGA	chr1:151377937-151378212(-)$1	275	129	135	16.0487
AGGAGU	chr17:78311629-78311896(+)$1	267	58	64	13.6097
AGGAGU	chr17:78290930-78291178(+)$1	248	106	112	13.6097
AGGAGA	chr1:19500815-19501033(-)$1	218	188	194	16.0487
AGGAGA	chr7:99631330-99631592(+)$1	262	81	87	16.0487
AGGAGA	chr3:58139249-58139466(+)$1	217	99	105	16.0487
AGGAGG	chr19:46289584-46289888(-)$1	304	285	291	13.7317
AGGAGG	chr2:130832636-130832864(-)$1	228	86	92	13.7317
AGGAGA	chr7:98527694-98527929(+)$1	235	127	133	16.0487
AGGAGC	chr22:51159659-51159916(+)$1	257	149	155	13.6097

#otherMatches

#Struct PSSM
lfffff	chr17:65850546-65850769(+)$1	223	160	166	13.7317
:eeeee	chr6:144780004-144780245(+)$1	241	66	72	13.7317
mmmhhh	chr1:19511535-19511759(-)$1	224	15	21	16.0487
::::dd	chr14:21546253-21546522(+)$1	269	143	149	13.6097
:BB{CC	chr1:156252367-156252624(-)$1	257	1	7	13.6097
FFFFKK	chr16:30745155-30745406(+)$1	251	82	88	16.0487
cc22dd	chr1:39759072-39759392(+)$1	320	269	275	16.0487
:CCCDD	chr19:19136331-19136600(-)$1	269	0	6	16.0487
!fffff	chr1:18023662-18023931(+)$1	269	70	76	16.0487
======	chr12:112699013-112699299(-)$1	286	64	70	13.6097
nnnnng	chr10:19620197-19620417(+)$1	220	135	141	16.0487
:EEEEE	chrY:21869356-21869610(-)$1	254	6	12	16.0487
+fffff	chr9:114192746-114193000(-)$1	254	44	50	13.7317
gbbccc	chr17:78319551-78319781(+)$1	230	178	184	16.0487
gggggg	chr16:2814725-2814960(+)$1	235	112	118	16.0487
ccclll	chr8:103298548-103298809(-)$1	261	63	69	16.0487
ddd:FF	chr6:90402669-90402914(-)$1	245	148	154	16.0487
ffffff	chr10:19636630-19636881(+)$1	251	120	126	16.0487
fff[bb	chr16:70697892-70698155(-)$1	263	169	175	13.6097
gggg]a	chr9:134334507-134334835(+)$1	328	59	65	13.7317
fffff:	chr12:26868978-26869244(-)$1	266	77	83	16.0487
GGGGGG	chr1:19483273-19483516(-)$1	243	61	67	13.6097
####ff	chr2:216296455-216296741(-)$1	286	101	107	16.0487
oooooo	chr10:79613018-79613260(-)$1	242	114	120	16.0487
FFFFF:	chr1:39852951-39853244(+)$1	293	63	69	16.0487
f!!bbe	chr2:218712525-218712770(-)$1	245	13	19	16.0487
bb22gg	chr17:35605421-35605643(-)$1	222	192	198	16.0487
>>>>>>	chr19:39966655-39966900(+)$1	245	177	183	16.0487
wwwwww	chr1:12316943-12317210(+)$1	267	146	152	16.0487
fff!!f	chr19:57326647-57326911(-)$1	264	16	22	13.6097
nnnnne	chr16:72984705-72984941(-)$1	236	131	137	13.6097
55bb44	chr1:151377937-151378212(-)$1	275	129	135	16.0487
gggggg	chr17:78311629-78311896(+)$1	267	58	64	13.6097
ooofff	chr17:78290930-78291178(+)$1	248	106	112	13.6097
:IIIII	chr1:19500815-19501033(-)$1	218	188	194	16.0487
7dddd:	chr7:99631330-99631592(+)$1	262	81	87	16.0487
##bb))	chr3:58139249-58139466(+)$1	217	99	105	16.0487
IIIIII	chr19:46289584-46289888(-)$1	304	285	291	13.7317
dddd[c	chr2:130832636-130832864(-)$1	228	86	92	13.7317
5555bb	chr7:98527694-98527929(+)$1	235	127	133	16.0487
EEEE:c	chr22:51159659-51159916(+)$1	257	149	155	13.6097

#DB
.)))))	chr17:65850546-65850769(+)$1	1	160	166	13.7317
.(((((	chr6:144780004-144780245(+)$1	1	66	72	13.7317
...)))	chr1:19511535-19511759(-)$1	1	15	21	16.0487
....((	chr14:21546253-21546522(+)$1	1	143	149	13.6097
.((.((	chr1:156252367-156252624(-)$1	1	1	7	13.6097
((((..	chr16:30745155-30745406(+)$1	1	82	88	16.0487
))..))	chr1:39759072-39759392(+)$1	1	269	275	16.0487
.(((((	chr19:19136331-19136600(-)$1	1	0	6	16.0487
.(((((	chr1:18023662-18023931(+)$1	1	70	76	16.0487
((((((	chr12:112699013-112699299(-)$1	1	64	70	13.6097
.....)	chr10:19620197-19620417(+)$1	1	135	141	16.0487
.(((((	chrY:21869356-21869610(-)$1	1	6	12	16.0487
.(((((	chr9:114192746-114193000(-)$1	1	44	50	13.7317
((((((	chr17:78319551-78319781(+)$1	1	178	184	16.0487
))))))	chr16:2814725-2814960(+)$1	1	112	118	16.0487
(((...	chr8:103298548-103298809(-)$1	1	63	69	16.0487
))).))	chr6:90402669-90402914(-)$1	1	148	154	16.0487
))))))	chr10:19636630-19636881(+)$1	1	120	126	16.0487
(((.((	chr16:70697892-70698155(-)$1	1	169	175	13.6097
)))).)	chr9:134334507-134334835(+)$1	1	59	65	13.7317
))))).	chr12:26868978-26869244(-)$1	1	77	83	16.0487
((((((	chr1:19483273-19483516(-)$1	1	61	67	13.6097
....((	chr2:216296455-216296741(-)$1	1	101	107	16.0487
......	chr10:79613018-79613260(-)$1	1	114	120	16.0487
(((((.	chr1:39852951-39853244(+)$1	1	63	69	16.0487
(..(((	chr2:218712525-218712770(-)$1	1	13	19	16.0487
))..))	chr17:35605421-35605643(-)$1	1	192	198	16.0487
......	chr19:39966655-39966900(+)$1	1	177	183	16.0487
......	chr1:12316943-12317210(+)$1	1	146	152	16.0487
(((..(	chr19:57326647-57326911(-)$1	1	16	22	13.6097
.....)	chr16:72984705-72984941(-)$1	1	131	137	13.6097
..))..	chr1:151377937-151378212(-)$1	1	129	135	16.0487
((((((	chr17:78311629-78311896(+)$1	1	58	64	13.6097
...)))	chr17:78290930-78291178(+)$1	1	106	112	13.6097
.)))))	chr1:19500815-19501033(-)$1	1	188	194	16.0487
.)))).	chr7:99631330-99631592(+)$1	1	81	87	16.0487
..((..	chr3:58139249-58139466(+)$1	1	99	105	16.0487
))))))	chr19:46289584-46289888(-)$1	1	285	291	13.7317
((((.(	chr2:130832636-130832864(-)$1	1	86	92	13.7317
....))	chr7:98527694-98527929(+)$1	1	127	133	16.0487
((((.(	chr22:51159659-51159916(+)$1	1	149	155	13.6097

#PSSM
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 0.60	G : 0.14	C : 0.12	U : 0.12	

#score	619.7073170731711
#seq	41
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_transcript_m3_run2.nuc.txt

#NT
UGGC	chr12:49438134-49438380(-)$1	246	5	9	12.0000
UGGC	chr12:12333939-12334229(-)$1	290	55	59	12.0000
UGGC	chr1:2224112-2224356(+)$1	244	85	89	12.0000
UGGC	chr2:201677829-201678095(+)$1	266	64	68	12.0000
UGGC	chr3:184049018-184049229(+)$1	211	59	63	12.0000
UGGC	chr17:59474083-59474415(-)$1	332	18	22	12.0000
UGGC	chr16:18863639-18863886(-)$1	247	96	100	12.0000
UGGC	chr9:137246175-137246438(+)$1	263	25	29	12.0000
UGGC	chr21:46850522-46850780(+)$1	258	10	14	12.0000
UGGC	chr9:137253425-137253722(+)$1	297	26	30	12.0000
UGGC	chr1:205718987-205719261(-)$1	274	125	129	12.0000
UGGC	chr19:1410331-1410596(+)$1	265	1	5	12.0000
UGGC	chr18:3247720-3247980(+)$1	260	192	196	12.0000
UGGC	chr1:17995419-17995666(+)$1	247	24	28	12.0000
UGGC	chr16:16421913-16422158(+)$1	245	25	29	12.0000
UGGC	chr5:75699069-75699318(+)$1	249	23	27	12.0000
UGGC	chr12:112676863-112677141(-)$1	278	128	132	12.0000
UGGC	chr18:74204496-74204801(-)$1	305	163	167	12.0000
UGGC	chr6:170706986-170707239(+)$1	253	81	85	12.0000
UGGC	chr5:132387625-132388053(+)$1	428	277	281	12.0000
UGGC	chr17:14212692-14212969(+)$1	277	42	46	12.0000
UGGC	chr2:236465543-236465792(+)$1	249	140	144	12.0000
UGGC	chr15:28436023-28436273(-)$1	250	221	225	12.0000
uggc	chr12:7052927-7053142(+)$1	215	91	95	12.0000
UGGC	chr21:46858453-46858702(+)$1	249	127	131	12.0000
UGGC	chr9:116997819-116998032(+)$1	213	20	24	12.0000
UGGC	chr11:47753710-47753967(-)$1	257	32	36	12.0000
UGGC	chr3:197243330-197243646(-)$1	316	295	299	12.0000
uggc	chr12:133271811-133272083(+)$1	272	211	215	12.0000
UGGC	chr15:25326136-25326441(+)$1	305	169	173	12.0000
UGGC	chr5:140699410-140699685(-)$1	275	261	265	12.0000
UGGC	chr16:15219448-15219688(-)$1	240	25	29	12.0000
UGGC	chr1:43907256-43907543(+)$1	287	193	197	12.0000
UGGC	chr16:85670211-85670508(+)$1	297	198	202	12.0000
UGGC	chr8:124371436-124371666(-)$1	230	110	114	12.0000
UGGC	chr7:158151707-158151959(-)$1	252	133	137	12.0000
UGGC	chr2:62932898-62933159(+)$1	261	31	35	12.0000
UGGC	chr19:23507630-23507914(-)$1	284	21	25	12.0000
UGGC	chr7:72861492-72861719(-)$1	227	111	115	12.0000
UGGC	chr19:4035472-4035735(+)$1	263	86	90	12.0000
UGGC	chr22:48982382-48982675(+)$1	293	24	28	12.0000
UGGC	chr12:123997886-123998189(-)$1	303	6	10	12.0000
UGGC	chr2:216873194-216873479(-)$1	285	6	10	12.0000
UGGC	chr1:39908288-39908558(+)$1	270	116	120	12.0000
UGGC	chr17:75211194-75211453(+)$1	259	211	215	12.0000
UGGC	chr6:170705997-170706237(+)$1	240	26	30	12.0000
UGGC	chr1:113231453-113231702(+)$1	249	97	101	12.0000
UGGC	chr4:2695443-2695696(+)$1	253	125	129	12.0000
UGGC	chr15:28424186-28424412(-)$1	226	95	99	12.0000
UGGC	chr6:26216694-26216959(-)$1	265	165	169	12.0000
UGGC	chr4:151837753-151837990(-)$1	237	127	131	12.0000
UGGC	chr6:56330850-56331095(-)$1	245	178	182	12.0000
uggc	chr19:23504918-23505196(-)$1	278	182	186	12.0000
UGGC	chr19:10464509-10464769(-)$1	260	109	113	12.0000
UGGC	chr20:60887441-60887671(-)$1	230	49	53	12.0000
UGGC	chr8:144815558-144815828(-)$1	270	27	31	12.0000
UGGC	chr14:61201413-61201703(+)$1	290	116	120	12.0000
UGGC	chr16:2139265-2139572(-)$1	307	15	19	12.0000
UGGC	chr14:20923335-20923612(+)$1	277	138	142	12.0000
UGGC	chr16:16468119-16468385(+)$1	266	137	141	12.0000
UGGC	chr1:958584-958832(+)$1	248	37	41	12.0000
UGGC	chr17:75211253-75211535(+)$1	282	152	156	12.0000
UGGC	chr11:637282-637542(+)$1	260	59	63	12.0000
UGGC	chr1:43902821-43903091(+)$1	270	59	63	12.0000
UGGC	chr6:56340880-56341168(-)$1	288	37	41	12.0000
UGGC	chr6:56350051-56350334(-)$1	283	160	164	12.0000
UGGC	chr4:100495909-100496168(+)$1	259	81	85	12.0000
uggc	chr22:48982147-48982465(+)$1	318	75	79	12.0000
UGGC	chrX:122769829-122770093(-)$1	264	70	74	12.0000
UGGC	chr12:123998097-123998362(-)$1	265	25	29	12.0000
UGGC	chr9:136742009-136742246(-)$1	237	22	26	12.0000
UGGC	chr2:201676580-201676814(+)$1	234	26	30	12.0000
UGGC	chr9:137256827-137257081(+)$1	254	114	118	12.0000
UGGC	chr16:16422407-16422644(+)$1	237	9	13	12.0000
UGGC	chr8:48769616-48769847(-)$1	231	11	15	12.0000
UGGC	chr1:19518588-19518808(-)$1	220	18	22	12.0000
UGGC	chr6:90452776-90453010(-)$1	234	41	45	12.0000
UGGC	chr2:236451889-236452152(+)$1	263	95	99	12.0000
UGGC	chr21:46852498-46852791(+)$1	293	14	18	12.0000
UGGC	chr5:102455923-102456269(+)$1	346	105	109	12.0000

#otherMatches

#Struct PSSM
hhhh	chr17:35634750-35634997(-)$1	247	111	115	12.0000
[ccc	chr12:49438134-49438380(-)$1	246	5	9	12.0000
JJJJ	chr12:12333939-12334229(-)$1	290	55	59	12.0000
lhhh	chr1:2224112-2224356(+)$1	244	85	89	12.0000
DDDD	chr2:201677829-201678095(+)$1	266	64	68	12.0000
22ff	chr3:184049018-184049229(+)$1	211	59	63	12.0000
DDDD	chr17:59474083-59474415(-)$1	332	18	22	12.0000
:ccc	chr16:18863639-18863886(-)$1	247	96	100	12.0000
:eee	chr9:137246175-137246438(+)$1	263	25	29	12.0000
GGGG	chr21:46850522-46850780(+)$1	258	10	14	12.0000
[fff	chr9:137253425-137253722(+)$1	297	26	30	12.0000
JJJJ	chr1:205718987-205719261(-)$1	274	125	129	12.0000
A{CC	chr19:1410331-1410596(+)$1	265	1	5	12.0000
$$gg	chr18:3247720-3247980(+)$1	260	192	196	12.0000
ffff	chr1:17995419-17995666(+)$1	247	24	28	12.0000
cccc	chr16:16421913-16422158(+)$1	245	25	29	12.0000
iiii	chr5:75699069-75699318(+)$1	249	23	27	12.0000
E:ee	chr12:112676863-112677141(-)$1	278	128	132	12.0000
3bbg	chr18:74204496-74204801(-)$1	305	163	167	12.0000
6ddd	chr6:170706986-170707239(+)$1	253	81	85	12.0000
JJJJ	chr5:132387625-132388053(+)$1	428	277	281	12.0000
2eee	chr17:14212692-14212969(+)$1	277	42	46	12.0000
!ddd	chr2:236465543-236465792(+)$1	249	140	144	12.0000
oocc	chr15:28436023-28436273(-)$1	250	221	225	12.0000
===p	chr12:7052927-7053142(+)$1	215	91	95	12.0000
444f	chr21:46858453-46858702(+)$1	249	127	131	12.0000
wggg	chr9:116997819-116998032(+)$1	213	20	24	12.0000
ee::	chr11:47753710-47753967(-)$1	257	32	36	12.0000
B}CC	chr3:197243330-197243646(-)$1	316	295	299	12.0000
""dd	chr12:133271811-133272083(+)$1	272	211	215	12.0000
ccc[	chr15:25326136-25326441(+)$1	305	169	173	12.0000
dddd	chr5:140699410-140699685(-)$1	275	261	265	12.0000
gg!!	chr16:15219448-15219688(-)$1	240	25	29	12.0000
ddd]	chr1:43907256-43907543(+)$1	287	193	197	12.0000
DD}D	chr16:85670211-85670508(+)$1	297	198	202	12.0000
lccc	chr8:124371436-124371666(-)$1	230	110	114	12.0000
:fff	chr7:158151707-158151959(-)$1	252	133	137	12.0000
EEE=	chr2:62932898-62933159(+)$1	261	31	35	12.0000
bbbb	chr19:23507630-23507914(-)$1	284	21	25	12.0000
b[bb	chr7:72861492-72861719(-)$1	227	111	115	12.0000
===[	chr19:4035472-4035735(+)$1	263	86	90	12.0000
eeee	chr22:48982382-48982675(+)$1	293	24	28	12.0000
EKKC	chr12:123997886-123998189(-)$1	303	6	10	12.0000
ddhh	chr2:216873194-216873479(-)$1	285	6	10	12.0000
eeee	chr1:39908288-39908558(+)$1	270	116	120	12.0000
:::c	chr17:75211194-75211453(+)$1	259	211	215	12.0000
====	chr6:170705997-170706237(+)$1	240	26	30	12.0000
FFF:	chr1:113231453-113231702(+)$1	249	97	101	12.0000
ffff	chr4:2695443-2695696(+)$1	253	125	129	12.0000
dd[a	chr15:28424186-28424412(-)$1	226	95	99	12.0000
EEbb	chr6:26216694-26216959(-)$1	265	165	169	12.0000
:fff	chr4:151837753-151837990(-)$1	237	127	131	12.0000
DDCC	chr6:56330850-56331095(-)$1	245	178	182	12.0000
#ddd	chr19:23504918-23505196(-)$1	278	182	186	12.0000
hhhh	chr19:10464509-10464769(-)$1	260	109	113	12.0000
clll	chr20:60887441-60887671(-)$1	230	49	53	12.0000
IIII	chr8:144815558-144815828(-)$1	270	27	31	12.0000
f333	chr14:61201413-61201703(+)$1	290	116	120	12.0000
FFFF	chr16:2139265-2139572(-)$1	307	15	19	12.0000
ccbb	chr14:20923335-20923612(+)$1	277	138	142	12.0000
bddd	chr16:16468119-16468385(+)$1	266	137	141	12.0000
eee!	chr1:958584-958832(+)$1	248	37	41	12.0000
HHHH	chr17:75211253-75211535(+)$1	282	152	156	12.0000
8888	chr11:637282-637542(+)$1	260	59	63	12.0000
dddd	chr1:43902821-43903091(+)$1	270	59	63	12.0000
mmee	chr6:56340880-56341168(-)$1	288	37	41	12.0000
eeea	chr6:56350051-56350334(-)$1	283	160	164	12.0000
ddd[	chr4:100495909-100496168(+)$1	259	81	85	12.0000
BB{E	chr22:48982147-48982465(+)$1	318	75	79	12.0000
dddd	chrX:122769829-122770093(-)$1	264	70	74	12.0000
mmmm	chr12:123998097-123998362(-)$1	265	25	29	12.0000
[ddd	chr9:136742009-136742246(-)$1	237	22	26	12.0000
B{BB	chr2:201676580-201676814(+)$1	234	26	30	12.0000
ceee	chr9:137256827-137257081(+)$1	254	114	118	12.0000
lccc	chr16:16422407-16422644(+)$1	237	9	13	12.0000
ffff	chr8:48769616-48769847(-)$1	231	11	15	12.0000
]fff	chr1:19518588-19518808(-)$1	220	18	22	12.0000
UGGG	chr6:90452776-90453010(-)$1	234	41	45	12.0000
lfff	chr2:236451889-236452152(+)$1	263	95	99	12.0000
DDcc	chr21:46852498-46852791(+)$1	293	14	18	12.0000
f22d	chr5:102455923-102456269(+)$1	346	105	109	12.0000

#DB
))))	chr17:35634750-35634997(-)$1	1	111	115	12.0000
.(((	chr12:49438134-49438380(-)$1	1	5	9	12.0000
((((	chr12:12333939-12334229(-)$1	1	55	59	12.0000
.)))	chr1:2224112-2224356(+)$1	1	85	89	12.0000
((((	chr2:201677829-201678095(+)$1	1	64	68	12.0000
..))	chr3:184049018-184049229(+)$1	1	59	63	12.0000
((((	chr17:59474083-59474415(-)$1	1	18	22	12.0000
.(((	chr16:18863639-18863886(-)$1	1	96	100	12.0000
.(((	chr9:137246175-137246438(+)$1	1	25	29	12.0000
((((	chr21:46850522-46850780(+)$1	1	10	14	12.0000
.(((	chr9:137253425-137253722(+)$1	1	26	30	12.0000
))))	chr1:205718987-205719261(-)$1	1	125	129	12.0000
(.((	chr19:1410331-1410596(+)$1	1	1	5	12.0000
..((	chr18:3247720-3247980(+)$1	1	192	196	12.0000
((((	chr1:17995419-17995666(+)$1	1	24	28	12.0000
))((	chr16:16421913-16422158(+)$1	1	25	29	12.0000
((((	chr5:75699069-75699318(+)$1	1	23	27	12.0000
(.((	chr12:112676863-112677141(-)$1	1	128	132	12.0000
.)))	chr18:74204496-74204801(-)$1	1	163	167	12.0000
.)))	chr6:170706986-170707239(+)$1	1	81	85	12.0000
))))	chr5:132387625-132388053(+)$1	1	277	281	12.0000
.)))	chr17:14212692-14212969(+)$1	1	42	46	12.0000
.(((	chr2:236465543-236465792(+)$1	1	140	144	12.0000
..))	chr15:28436023-28436273(-)$1	1	221	225	12.0000
(((.	chr12:7052927-7053142(+)$1	1	91	95	12.0000
...)	chr21:46858453-46858702(+)$1	1	127	131	12.0000
.)))	chr9:116997819-116998032(+)$1	1	20	24	12.0000
))..	chr11:47753710-47753967(-)$1	1	32	36	12.0000
).))	chr3:197243330-197243646(-)$1	1	295	299	12.0000
..((	chr12:133271811-133272083(+)$1	1	211	215	12.0000
(((.	chr15:25326136-25326441(+)$1	1	169	173	12.0000
))))	chr5:140699410-140699685(-)$1	1	261	265	12.0000
((..	chr16:15219448-15219688(-)$1	1	25	29	12.0000
))).	chr1:43907256-43907543(+)$1	1	193	197	12.0000
)).)	chr16:85670211-85670508(+)$1	1	198	202	12.0000
.)))	chr8:124371436-124371666(-)$1	1	110	114	12.0000
.(((	chr7:158151707-158151959(-)$1	1	133	137	12.0000
((((	chr2:62932898-62933159(+)$1	1	31	35	12.0000
))))	chr19:23507630-23507914(-)$1	1	21	25	12.0000
(.((	chr7:72861492-72861719(-)$1	1	111	115	12.0000
(((.	chr19:4035472-4035735(+)$1	1	86	90	12.0000
))))	chr22:48982382-48982675(+)$1	1	24	28	12.0000
(..(	chr12:123997886-123998189(-)$1	1	6	10	12.0000
((((	chr2:216873194-216873479(-)$1	1	6	10	12.0000
((((	chr1:39908288-39908558(+)$1	1	116	120	12.0000
...(	chr17:75211194-75211453(+)$1	1	211	215	12.0000
((((	chr6:170705997-170706237(+)$1	1	26	30	12.0000
(((.	chr1:113231453-113231702(+)$1	1	97	101	12.0000
((((	chr4:2695443-2695696(+)$1	1	125	129	12.0000
((.(	chr15:28424186-28424412(-)$1	1	95	99	12.0000
((((	chr6:26216694-26216959(-)$1	1	165	169	12.0000
.(((	chr4:151837753-151837990(-)$1	1	127	131	12.0000
))))	chr6:56330850-56331095(-)$1	1	178	182	12.0000
.(((	chr19:23504918-23505196(-)$1	1	182	186	12.0000
((((	chr19:10464509-10464769(-)$1	1	109	113	12.0000
(...	chr20:60887441-60887671(-)$1	1	49	53	12.0000
((((	chr8:144815558-144815828(-)$1	1	27	31	12.0000
)...	chr14:61201413-61201703(+)$1	1	116	120	12.0000
((((	chr16:2139265-2139572(-)$1	1	15	19	12.0000
))))	chr14:20923335-20923612(+)$1	1	138	142	12.0000
))))	chr16:16468119-16468385(+)$1	1	137	141	12.0000
(((.	chr1:958584-958832(+)$1	1	37	41	12.0000
((((	chr17:75211253-75211535(+)$1	1	152	156	12.0000
....	chr11:637282-637542(+)$1	1	59	63	12.0000
((((	chr1:43902821-43903091(+)$1	1	59	63	12.0000
..))	chr6:56340880-56341168(-)$1	1	37	41	12.0000
((((	chr6:56350051-56350334(-)$1	1	160	164	12.0000
(((.	chr4:100495909-100496168(+)$1	1	81	85	12.0000
((.(	chr22:48982147-48982465(+)$1	1	75	79	12.0000
((((	chrX:122769829-122770093(-)$1	1	70	74	12.0000
....	chr12:123998097-123998362(-)$1	1	25	29	12.0000
.(((	chr9:136742009-136742246(-)$1	1	22	26	12.0000
(.((	chr2:201676580-201676814(+)$1	1	26	30	12.0000
))))	chr9:137256827-137257081(+)$1	1	114	118	12.0000
.)))	chr16:16422407-16422644(+)$1	1	9	13	12.0000
((((	chr8:48769616-48769847(-)$1	1	11	15	12.0000
.)))	chr1:19518588-19518808(-)$1	1	18	22	12.0000
.(((	chr6:90452776-90453010(-)$1	1	41	45	12.0000
.)))	chr2:236451889-236452152(+)$1	1	95	99	12.0000
((((	chr21:46852498-46852791(+)$1	1	14	18	12.0000
)..)	chr5:102455923-102456269(+)$1	1	105	109	12.0000

#PSSM
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
C : 0.95	c : 0.04	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_CDS_m1_run2.nuc.txt

#NT
ccuggccc	chr12:6438966-6439298(-)$1	332	95	103	17.2407
CCAGCCCC	chr17:79826201-79826492(-)$1	291	186	194	17.5185
CCUGGCCC	chr19:806308-806601(+)$1	293	127	135	17.2407
CCUGCCCC	chr11:63448937-63449236(+)$1	299	268	276	20.5740
CCUCCCCC	chr19:45323912-45324165(+)$1	253	38	46	17.8888
CCUCCCCC	chr17:76968530-76968793(-)$1	263	127	135	17.8888
CCUCCCCC	chr19:54969628-54969935(+)$1	307	157	165	17.8888
CCAGCCCC	chr11:2154237-2154523(-)$1	286	50	58	17.5185
CCUCCCCC	chr17:40714376-40714666(+)$1	290	110	118	17.8888
CCUGGCCC	chr21:46911046-46911323(+)$1	277	131	139	17.2407
CCUGGCCC	chr14:94849421-94849633(-)$1	212	28	36	17.2407
CCCGCCCC	chr16:28847185-28847424(+)$1	239	97	105	17.0555
CCUCCCCC	chr20:2442226-2442551(-)$1	325	117	125	17.8888
CCUCCCCC	chr19:6720477-6720762(-)$1	285	209	217	17.8888
ccuccccc	chr19:2227777-2228083(+)$1	306	146	154	17.8888
CCUGCCCC	chr19:56203112-56203408(+)$1	296	49	57	20.5740
CCUGCCCC	chr15:69747422-69747689(+)$1	267	176	184	20.5740
CCUGCCCC	chr10:95353519-95353730(-)$1	211	65	73	20.5740
CCGGCCCC	chr12:125262891-125263169(-)$1	278	84	92	17.3333
CCUGCCCC	chr1:1164069-1164363(-)$1	294	141	149	20.5740
ccggcccc	chr17:37856360-37856653(+)$1	293	42	50	17.3333
CCUUCCCC	chr1:116946407-116946645(+)$1	238	118	126	17.0555
CCUGCCCC	chr12:125284600-125284890(-)$1	290	86	94	20.5740
CCUGCCCC	chr7:73011738-73012029(-)$1	291	140	148	20.5740
ccggcccC	chr16:29817954-29818179(+)$1	225	25	33	17.3333
CCCGCCCC	chr7:5352340-5352640(-)$1	300	177	185	17.0555
CCUCCCCC	chr4:83763289-83763593(-)$1	304	165	173	17.8888
CCUGCCCC	chr3:48461369-48461614(-)$1	245	236	244	20.5740
ccggcccc	chr16:29818395-29818640(+)$1	245	50	58	17.3333
CCAGCCCC	chr17:17723517-17723808(-)$1	291	66	74	17.5185
CCUGCCCC	chr16:30012572-30012915(+)$1	343	260	268	20.5740
CCUGGCCC	chr11:2154676-2154886(-)$1	210	61	69	17.2407
CCAGCCCC	chr16:2819011-2819347(+)$1	336	2	10	17.5185
CCUGCCCC	chr9:124064137-124064450(+)$1	313	67	75	20.5740
CCUGCCCC	chr3:48461198-48461433(-)$1	235	55	63	20.5740
CCUGCCCC	chr17:41610535-41610795(-)$1	260	116	124	20.5740
CCUACCCC	chr3:47452187-47452432(+)$1	245	73	81	16.9629
CCUGGCCC	chr5:176523537-176523777(+)$1	240	50	58	17.2407
ccggcccc	chr8:145149895-145150169(+)$1	274	11	19	17.3333
CCUCCCCC	chr17:79826391-79826629(-)$1	238	53	61	17.8888
CCAGCCCC	chr7:73011521-73011742(-)$1	221	20	28	17.5185
CCUGCCCC	chr11:72425137-72425431(-)$1	294	184	192	20.5740
CCUGGCCC	chr11:125472671-125472943(+)$1	272	108	116	17.2407
CCUGCCCC	chr11:64897373-64897646(-)$1	273	112	120	20.5740
ccugcccc	chr1:16262392-16262680(+)$1	288	81	89	20.5740
CCUGGCCC	chr11:2154787-2154996(-)$1	209	171	179	17.2407
CCUGCCCC	chr19:56206493-56206785(+)$1	292	168	176	20.5740
CCUUCCCC	chr1:93645612-93645884(-)$1	272	107	115	17.0555
CCUCCCCC	chrX:70767591-70767858(+)$1	267	72	80	17.8888
CCAGCCCC	chr8:145065544-145065844(+)$1	300	28	36	17.5185
CCUGCCCC	chr17:80043493-80043732(-)$1	239	156	164	20.5740
CCAGCCCC	chr11:2154348-2154553(-)$1	205	80	88	17.5185
CCUCCCCC	chr8:101733661-101733956(-)$1	295	52	60	17.8888

#otherMatches

#Struct PSSM
bb:GGGGG	chr11:2154651-2154876(-)$1	225	51	59	17.2407
""cccqqq	chr12:6438966-6439298(-)$1	332	95	103	17.2407
$ddddlll	chr17:79826201-79826492(-)$1	291	186	194	17.5185
dddd[ddd	chr19:806308-806601(+)$1	293	127	135	17.2407
ffffffee	chr11:63448937-63449236(+)$1	299	268	276	20.5740
GGGGGddd	chr19:45323912-45324165(+)$1	253	38	46	17.8888
qqqqqqqq	chr17:76968530-76968793(-)$1	263	127	135	17.8888
cqqqqqqq	chr19:54969628-54969935(+)$1	307	157	165	17.8888
ccc22a]e	chr11:2154237-2154523(-)$1	286	50	58	17.5185
::::::ee	chr17:40714376-40714666(+)$1	290	110	118	17.8888
]ffffff]	chr21:46911046-46911323(+)$1	277	131	139	17.2407
ellleeee	chr14:94849421-94849633(-)$1	212	28	36	17.2407
"""bb###	chr16:28847185-28847424(+)$1	239	97	105	17.0555
:::CCCYY	chr20:2442226-2442551(-)$1	325	117	125	17.8888
:ffffffq	chr19:6720477-6720762(-)$1	285	209	217	17.8888
cc::::::	chr19:2227777-2228083(+)$1	306	146	154	17.8888
JJJJJJJJ	chr19:56203112-56203408(+)$1	296	49	57	20.5740
hdddda[e	chr15:69747422-69747689(+)$1	267	176	184	20.5740
4444ccc3	chr10:95353519-95353730(-)$1	211	65	73	20.5740
EE}DDDDA	chr12:125262891-125263169(-)$1	278	84	92	17.3333
!!dddd!!	chr1:1164069-1164363(-)$1	294	141	149	20.5740
CCCKKDDD	chr17:37856360-37856653(+)$1	293	42	50	17.3333
cc!!bbgg	chr1:116946407-116946645(+)$1	238	118	126	17.0555
:::bb[cc	chr12:125284600-125284890(-)$1	290	86	94	20.5740
BBdddd^^	chr7:73011738-73012029(-)$1	291	140	148	20.5740
##hhhhhh	chr16:29817954-29818179(+)$1	225	25	33	17.3333
"""cccnn	chr7:5352340-5352640(-)$1	300	177	185	17.0555
ddvvvvvv	chr4:83763289-83763593(-)$1	304	165	173	17.8888
::::::::	chr3:48461369-48461614(-)$1	245	236	244	20.5740
odddd22a	chr16:29818395-29818640(+)$1	245	50	58	17.3333
eecccsss	chr17:17723517-17723808(-)$1	291	66	74	17.5185
cc::::::	chr16:30012572-30012915(+)$1	343	260	268	20.5740
bbdddd::	chr11:2154676-2154886(-)$1	210	61	69	17.2407
:::EEEEE	chr16:2819011-2819347(+)$1	336	2	10	17.5185
LDDDDLLL	chr9:124064137-124064450(+)$1	313	67	75	20.5740
pppbb:::	chr3:48461198-48461433(-)$1	235	55	63	20.5740
::::::::	chr17:41610535-41610795(-)$1	260	116	124	20.5740
^^^^^^^^	chr3:47452187-47452432(+)$1	245	73	81	16.9629
{DDDD::e	chr5:176523537-176523777(+)$1	240	50	58	17.2407
GGGGG{A{	chr8:145149895-145150169(+)$1	274	11	19	17.3333
Diiiiiii	chr17:79826391-79826629(-)$1	238	53	61	17.8888
::::::::	chr7:73011521-73011742(-)$1	221	20	28	17.5185
MMMEEEEE	chr11:72425137-72425431(-)$1	294	184	192	20.5740
GGG{DDDD	chr11:125472671-125472943(+)$1	272	108	116	17.2407
d]ccc:::	chr11:64897373-64897646(-)$1	273	112	120	20.5740
^^^bb333	chr1:16262392-16262680(+)$1	288	81	89	20.5740
bbddddbb	chr11:2154787-2154996(-)$1	209	171	179	17.2407
cwwwwwww	chr19:56206493-56206785(+)$1	292	168	176	20.5740
ee]dddd:	chr1:93645612-93645884(-)$1	272	107	115	17.0555
bb::::::	chrX:70767591-70767858(+)$1	267	72	80	17.8888
::gggggg	chr8:145065544-145065844(+)$1	300	28	36	17.5185
ldddd]dd	chr17:80043493-80043732(-)$1	239	156	164	20.5740
ccc22a]e	chr11:2154348-2154553(-)$1	205	80	88	17.5185
VVVVVVVV	chr8:101733661-101733956(-)$1	295	52	60	17.8888

#DB
)).(((((	chr11:2154651-2154876(-)$1	1	51	59	17.2407
..(((...	chr12:6438966-6439298(-)$1	1	95	103	17.2407
.((((...	chr17:79826201-79826492(-)$1	1	186	194	17.5185
((((.(((	chr19:806308-806601(+)$1	1	127	135	17.2407
))))))))	chr11:63448937-63449236(+)$1	1	268	276	20.5740
((((((((	chr19:45323912-45324165(+)$1	1	38	46	17.8888
........	chr17:76968530-76968793(-)$1	1	127	135	17.8888
(.......	chr19:54969628-54969935(+)$1	1	157	165	17.8888
)))..).)	chr11:2154237-2154523(-)$1	1	50	58	17.5185
......((	chr17:40714376-40714666(+)$1	1	110	118	17.8888
.)))))).	chr21:46911046-46911323(+)$1	1	131	139	17.2407
(...))))	chr14:94849421-94849633(-)$1	1	28	36	17.2407
...((...	chr16:28847185-28847424(+)$1	1	97	105	17.0555
...)))..	chr20:2442226-2442551(-)$1	1	117	125	17.8888
.((((((.	chr19:6720477-6720762(-)$1	1	209	217	17.8888
))......	chr19:2227777-2228083(+)$1	1	146	154	17.8888
((((((((	chr19:56203112-56203408(+)$1	1	49	57	20.5740
((((((.(	chr15:69747422-69747689(+)$1	1	176	184	20.5740
....))).	chr10:95353519-95353730(-)$1	1	65	73	20.5740
)).)))))	chr12:125262891-125263169(-)$1	1	84	92	17.3333
..((((..	chr1:1164069-1164363(-)$1	1	141	149	20.5740
(((..(((	chr17:37856360-37856653(+)$1	1	42	50	17.3333
((..((((	chr1:116946407-116946645(+)$1	1	118	126	17.0555
...((.((	chr12:125284600-125284890(-)$1	1	86	94	20.5740
))((((..	chr7:73011738-73012029(-)$1	1	140	148	20.5740
..((((((	chr16:29817954-29818179(+)$1	1	25	33	17.3333
...(((..	chr7:5352340-5352640(-)$1	1	177	185	17.0555
((......	chr4:83763289-83763593(-)$1	1	165	173	17.8888
........	chr3:48461369-48461614(-)$1	1	236	244	20.5740
.))))..)	chr16:29818395-29818640(+)$1	1	50	58	17.3333
(((((...	chr17:17723517-17723808(-)$1	1	66	74	17.5185
))......	chr16:30012572-30012915(+)$1	1	260	268	20.5740
))))))..	chr11:2154676-2154886(-)$1	1	61	69	17.2407
...(((((	chr16:2819011-2819347(+)$1	1	2	10	17.5185
.((((...	chr9:124064137-124064450(+)$1	1	67	75	20.5740
...))...	chr3:48461198-48461433(-)$1	1	55	63	20.5740
........	chr17:41610535-41610795(-)$1	1	116	124	20.5740
........	chr3:47452187-47452432(+)$1	1	73	81	16.9629
.((((..(	chr5:176523537-176523777(+)$1	1	50	58	17.2407
(((((.(.	chr8:145149895-145150169(+)$1	1	11	19	17.3333
((((((((	chr17:79826391-79826629(-)$1	1	53	61	17.8888
........	chr7:73011521-73011742(-)$1	1	20	28	17.5185
...(((((	chr11:72425137-72425431(-)$1	1	184	192	20.5740
(((.((((	chr11:125472671-125472943(+)$1	1	108	116	17.2407
).)))...	chr11:64897373-64897646(-)$1	1	112	120	20.5740
...))...	chr1:16262392-16262680(+)$1	1	81	89	20.5740
))))))((	chr11:2154787-2154996(-)$1	1	171	179	17.2407
(.......	chr19:56206493-56206785(+)$1	1	168	176	20.5740
)).)))).	chr1:93645612-93645884(-)$1	1	107	115	17.0555
))......	chrX:70767591-70767858(+)$1	1	72	80	17.8888
..((((((	chr8:145065544-145065844(+)$1	1	28	36	17.5185
.)))).))	chr17:80043493-80043732(-)$1	1	156	164	20.5740
)))..).)	chr11:2154348-2154553(-)$1	1	80	88	17.5185
........	chr8:101733661-101733956(-)$1	1	52	60	17.8888

#PSSM
C : 0.87	c : 0.12	
C : 0.87	c : 0.12	
U : 0.68	A : 0.12	g : 0.07	u : 0.05	C : 0.03	G : 0.01	
G : 0.62	C : 0.18	g : 0.11	U : 0.03	c : 0.01	A : 0.01	
C : 0.72	G : 0.14	c : 0.11	g : 0.01	
C : 0.87	c : 0.12	
C : 0.87	c : 0.12	
C : 0.88	c : 0.11	

#score	996.1851851851843
#seq	54
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_transcript_m2_run2.nuc.txt

#NT
UUUUAGUCAAGGCAUGGGCAACUAAUGUCAGACUACUCAUUAUGUACUUUGGCUUUAAAAUGAAUAAUUUCCUUUCUUCGUUUUGUUUUAACAGAUAAUCCCAGAUCCAGCUGGAAAGCUGAAGUAUUUCGAUAAACUGAAUUGAGAAAUACUUCUUCAAGUUAUGAUGCUUGAAAGUUCUCAAUAAAGUUCACGGUUUCAUUACCACAUUGUGUUGCAGUAGUAAUUUCUUGGAGAAUAUAAAAAUCCACAUCAAAGUCCAAAGAUAUUU	chrX:23704300-23704597(+)$1	297	7	278	355.5000

#otherMatches

#Struct PSSM
:::iiiiiiiiinnnnniiiiiiiii:::iiiiiiiii"""ffffffdddd"""ddddoooooodddd333dddd]ffffff333iiiiiiiii:::::::::::eeeeemmmmeeeee::GGGGGGG{A:::::::::::::ddddooooooddddccc!!ggggggg!!bb!!bb!!bb[eeeee####ddddmmmmdddd]eeeee]bb]bb22bb22ggggggg333ccc:eeeee!!bb[cccpppppppccc]bb22eeeeeA}G	chr15:78461962-78462243(+)$1	281	3	274	355.5000
:::::CCC::eeeeebbmmmmbb]eeeee::FFFFFFBB{CCCJJJJJJJJJJJJJhhhhhhhh[bboooooobb]hhhhhhhh::::::::::::::::ddddooooooddddJJJJJJJJJJJJJ:::::::dddd!!ggggggg"""dddd!!ffffffooooooffffffddddggggggg22dddd:::cccooooooccc:::::CCC}BB}FFFFFFccc[ddddccc^^^^^^^^^^^^^^^^^^^^^^^ccc]dddd]ccce	chrX:23704300-23704597(+)$1	297	7	278	355.5000

#DB
...(((((((((.....)))))))))...(((((((((...((((((((((...((((......))))...)))).))))))...)))))))))...........(((((....)))))..(((((((.(.............((((......))))(((..(((((((..((..((..((.(((((....((((....)))).))))).)).))..))..)))))))...))).(((((..((.(((.......))).))..)))))).)	chr15:78461962-78462243(+)$1	1	3	274	355.5000
.....(((..(((((((....)).)))))..((((((((.((((((((((((((((((((((((.((......)).))))))))................((((......))))))))))))))))).......((((..(((((((...((((..((((((......)))))))))))))))))..))))...(((......))).....))).)).))))))(((.(((((((.......................))).)))).)))(	chrX:23704300-23704597(+)$1	1	7	278	355.5000

#PSSM
A : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
C : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	

#score	711.0
#seq	2
#width	271
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_CDS_m1_run1.nuc.txt

#NT
GUGGAAG	chr2:232325096-232325352(-)$1	256	157	164	13.5000
CAGGAAG	chr16:75270524-75270831(-)$1	307	156	163	12.7187
GAGGAAU	chr6:31937062-31937312(+)$1	250	69	76	12.0937
GUGGAAG	chr2:232325152-232325375(-)$1	223	180	187	13.5000
GUGGAAG	chr2:178083872-178084105(+)$1	233	120	127	13.5000
GAGGUAG	chrM:14201-14443(-)$1	242	63	70	12.9531
GAGGGAG	chr10:104113251-104113521(+)$1	270	49	56	13.2656
GUGGAAG	chr4:83348241-83348477(-)$1	236	81	88	13.5000
GAGGAGG	chr7:138145180-138145445(+)$1	265	38	45	12.7187
gaggagg	chr3:185637074-185637362(-)$1	288	77	84	12.7187
GAGGAAG	chr6:136597300-136597534(-)$1	234	168	175	16.7031
GUGGAAG	chr16:70601278-70601523(+)$1	245	41	48	13.5000
GAUGAAG	chr3:139092393-139092653(-)$1	260	122	129	12.1718
GAGAAAG	chrY:15026437-15026739(+)$1	302	287	294	12.4062
GAAGAAG	chr11:2972896-2973152(-)$1	256	116	123	12.1718
GAGGAGG	chr6:7574859-7575088(+)$1	229	109	116	12.7187
CAGGAAG	chr1:39888342-39888594(+)$1	252	83	90	12.7187
GAGGAUG	chr1:46035407-46035687(+)$1	280	14	21	12.3281
GAGGCAG	chr1:21102933-21103206(-)$1	273	40	47	13.2656
AAGGAAG	chr5:147778546-147778806(+)$1	260	67	74	12.5625
GAGGCAG	chr19:798426-798682(+)$1	256	206	213	13.2656
GCGGAAG	chr14:102471402-102471637(+)$1	235	152	159	12.8750
CAGGAAG	chr14:21484914-21485174(-)$1	260	23	30	12.7187
GAGAAAG	chr3:184041060-184041305(+)$1	245	237	244	12.4062
GAGGAAG	chr17:74732098-74732358(-)$1	260	92	99	16.7031
GAGGCAG	chr3:49049855-49050120(+)$1	265	35	42	13.2656
GAGGAAG	chr2:54872410-54872652(+)$1	242	113	120	16.7031
GAGGAAA	chr11:62300367-62300629(-)$1	262	79	86	12.2500
GAGGUAG	chr11:62294339-62294593(-)$1	254	133	140	12.9531
GAGUAAG	chr14:21963401-21963758(+)$1	357	93	100	12.1718
GAGGCAG	chr11:62286607-62286891(-)$1	284	6	13	13.2656
GAGGAGG	chr7:77166709-77166969(+)$1	260	11	18	12.7187
GAUGAAG	chr3:50137399-50137681(+)$1	282	68	75	12.1718
GAGGAGG	chr2:232319817-232320081(-)$1	264	50	57	12.7187
GUGGAAG	chr3:58106866-58107093(+)$1	227	103	110	13.5000
GAGGAGG	chr3:184045276-184045524(+)$1	248	150	157	12.7187
GUGGAAG	chr11:62290705-62290942(-)$1	237	139	146	13.5000
GAGGAAG	chr16:11990430-11990691(-)$1	261	183	190	16.7031
GAGGGAG	chr11:62293136-62293424(-)$1	288	116	123	13.2656
GAGGCAG	chr16:4721241-4721505(+)$1	264	66	73	13.2656
GAGGGAG	chr11:62293237-62293473(-)$1	236	165	172	13.2656
gagaaag	chr14:23528320-23528582(-)$1	262	77	84	12.4062
GAGGGAG	chr17:80397923-80398200(+)$1	277	76	83	13.2656
GAGGAAG	chr11:72423483-72423761(-)$1	278	241	248	16.7031
GAGGAAG	chr20:40079487-40079739(-)$1	252	19	26	16.7031
AAGGAAG	chr8:48805692-48805933(-)$1	241	24	31	12.5625
GAGGGAG	chr7:5402239-5402489(-)$1	250	100	107	13.2656
GAGAAAG	chr16:18849518-18849808(-)$1	290	40	47	12.4062
GAGGAAG	chr6:86324699-86324961(-)$1	262	102	109	16.7031
GAGGGAG	chr11:62295322-62295566(-)$1	244	104	111	13.2656
GAGGCAG	chr2:232320009-232320275(-)$1	266	80	87	13.2656
GUGGAAG	chr2:178081359-178081632(+)$1	273	131	138	13.5000
CAGGAAG	chr12:6700983-6701234(-)$1	251	240	247	12.7187
GAGGAAG	chr6:31785233-31785539(+)$1	306	84	91	16.7031
GAGGAAG	chr14:32546485-32546788(+)$1	303	24	31	16.7031
GUGGAAG	chr7:2414097-2414367(+)$1	270	20	27	13.5000
CAGGAAG	chr11:61079177-61079481(-)$1	304	111	118	12.7187
GAAGAAG	chr3:58123952-58124189(+)$1	237	88	95	12.1718
AAGGAAG	chrX:53613674-53613914(-)$1	240	153	160	12.5625
GAGGAAA	chr6:32945798-32946030(+)$1	232	163	170	12.2500
GAGGAAA	chr16:3117320-3117594(+)$1	274	4	11	12.2500
GGGGAAG	chr11:62284171-62284488(-)$1	317	9	16	12.7968
GUGGAAG	chr1:28176899-28177192(+)$1	293	100	107	13.5000

#otherMatches

#Struct PSSM
55555ff	chr19:8528361-8528680(+)$1	319	155	162	12.8750
:bb[ccc	chr2:232325096-232325352(-)$1	256	157	164	13.5000
cccpppp	chr16:75270524-75270831(-)$1	307	156	163	12.7187
EEEELLL	chr6:31937062-31937312(+)$1	250	69	76	12.0937
EEECCC}	chr2:232325152-232325375(-)$1	223	180	187	13.5000
ddd333f	chr2:178083872-178084105(+)$1	233	120	127	13.5000
eeeeea[	chrM:14201-14443(-)$1	242	63	70	12.9531
!eeeeec	chr10:104113251-104113521(+)$1	270	49	56	13.2656
obb7777	chr4:83348241-83348477(-)$1	236	81	88	13.5000
b22a444	chr7:138145180-138145445(+)$1	265	38	45	12.7187
^^^^^^^	chr3:185637074-185637362(-)$1	288	77	84	12.7187
ccc:::e	chr6:136597300-136597534(-)$1	234	168	175	16.7031
gggggbb	chr16:70601278-70601523(+)$1	245	41	48	13.5000
oooa333	chr3:139092393-139092653(-)$1	260	122	129	12.1718
JJJJJJJ	chrY:15026437-15026739(+)$1	302	287	294	12.4062
mmmmccc	chr11:2972896-2973152(-)$1	256	116	123	12.1718
vvvvvvv	chr6:7574859-7575088(+)$1	229	109	116	12.7187
ooooodd	chr1:39888342-39888594(+)$1	252	83	90	12.7187
{BB{EEE	chr1:46035407-46035687(+)$1	280	14	21	12.3281
dddd333	chr1:21102933-21103206(-)$1	273	40	47	13.2656
tteeeee	chr5:147778546-147778806(+)$1	260	67	74	12.5625
e:bb[cc	chr19:798426-798682(+)$1	256	206	213	13.2656
cdddd]e	chr14:102471402-102471637(+)$1	235	152	159	12.8750
ddddooo	chr14:21484914-21485174(-)$1	260	23	30	12.7187
:::::::	chr3:184041060-184041305(+)$1	245	237	244	12.4062
gggggss	chr17:74732098-74732358(-)$1	260	92	99	16.7031
a]eeeee	chr3:49049855-49050120(+)$1	265	35	42	13.2656
dddd[dd	chr2:54872410-54872652(+)$1	242	113	120	16.7031
fffff44	chr11:62300367-62300629(-)$1	262	79	86	12.2500
B:dddd!	chr11:62294339-62294593(-)$1	254	133	140	12.9531
D:FFFFF	chr14:21963401-21963758(+)$1	357	93	100	12.1718
Beeeeee	chr11:62286607-62286891(-)$1	284	6	13	13.2656
FMMMMBB	chr7:77166709-77166969(+)$1	260	11	18	12.7187
dddd!!e	chr3:50137399-50137681(+)$1	282	68	75	12.1718
hhhDDDD	chr2:232319817-232320081(-)$1	264	50	57	12.7187
hhhhhBB	chr3:58106866-58107093(+)$1	227	103	110	13.5000
c]bb]bb	chr3:184045276-184045524(+)$1	248	150	157	12.7187
"ccc+++	chr11:62290705-62290942(-)$1	237	139	146	13.5000
HHHHHHH	chr16:11990430-11990691(-)$1	261	183	190	16.7031
pddddBB	chr11:62293136-62293424(-)$1	288	116	123	13.2656
FFFFFFF	chr16:4721241-4721505(+)$1	264	66	73	13.2656
::ccc[a	chr11:62293237-62293473(-)$1	236	165	172	13.2656
:::::::	chr14:23528320-23528582(-)$1	262	77	84	12.4062
=[bb"""	chr17:80397923-80398200(+)$1	277	76	83	13.2656
b[bbsss	chr11:72423483-72423761(-)$1	278	241	248	16.7031
GGGGG{C	chr20:40079487-40079739(-)$1	252	19	26	16.7031
CCC:::h	chr8:48805692-48805933(-)$1	241	24	31	12.5625
eeeee22	chr7:5402239-5402489(-)$1	250	100	107	13.2656
eee4444	chr16:18849518-18849808(-)$1	290	40	47	12.4062
:::::::	chr6:86324699-86324961(-)$1	262	102	109	16.7031
ceeeee]	chr11:62295322-62295566(-)$1	244	104	111	13.2656
mmmmbb3	chr2:232320009-232320275(-)$1	266	80	87	13.2656
dd]ccc:	chr2:178081359-178081632(+)$1	273	131	138	13.5000
4ffffff	chr12:6700983-6701234(-)$1	251	240	247	12.7187
OFFFFFF	chr6:31785233-31785539(+)$1	306	84	91	16.7031
:::::::	chr14:32546485-32546788(+)$1	303	24	31	16.7031
D{BB{FF	chr7:2414097-2414367(+)$1	270	20	27	13.5000
dddoooo	chr11:61079177-61079481(-)$1	304	111	118	12.7187
dddd]cc	chr3:58123952-58124189(+)$1	237	88	95	12.1718
DDDD}CC	chrX:53613674-53613914(-)$1	240	153	160	12.5625
JJJJJJJ	chr6:32945798-32946030(+)$1	232	163	170	12.2500
ppppppc	chr16:3117320-3117594(+)$1	274	4	11	12.2500
CCCLLLB	chr11:62284171-62284488(-)$1	317	9	16	12.7968
ggg!!dd	chr1:28176899-28177192(+)$1	293	100	107	13.5000

#DB
.....))	chr19:8528361-8528680(+)$1	1	155	162	12.8750
.((.(((	chr2:232325096-232325352(-)$1	1	157	164	13.5000
(((....	chr16:75270524-75270831(-)$1	1	156	163	12.7187
((((...	chr6:31937062-31937312(+)$1	1	69	76	12.0937
)))))).	chr2:232325152-232325375(-)$1	1	180	187	13.5000
)))...)	chr2:178083872-178084105(+)$1	1	120	127	13.5000
((((((.	chrM:14201-14443(-)$1	1	63	70	12.9531
.((((((	chr10:104113251-104113521(+)$1	1	49	56	13.2656
.))....	chr4:83348241-83348477(-)$1	1	81	88	13.5000
)..)...	chr7:138145180-138145445(+)$1	1	38	45	12.7187
.......	chr3:185637074-185637362(-)$1	1	77	84	12.7187
)))...(	chr6:136597300-136597534(-)$1	1	168	175	16.7031
)))))))	chr16:70601278-70601523(+)$1	1	41	48	13.5000
...)...	chr3:139092393-139092653(-)$1	1	122	129	12.1718
)))))))	chrY:15026437-15026739(+)$1	1	287	294	12.4062
....)))	chr11:2972896-2973152(-)$1	1	116	123	12.1718
.......	chr6:7574859-7575088(+)$1	1	109	116	12.7187
.....))	chr1:39888342-39888594(+)$1	1	83	90	12.7187
.((.(((	chr1:46035407-46035687(+)$1	1	14	21	12.3281
))))...	chr1:21102933-21103206(-)$1	1	40	47	13.2656
..)))))	chr5:147778546-147778806(+)$1	1	67	74	12.5625
).((.((	chr19:798426-798682(+)$1	1	206	213	13.2656
))))).)	chr14:102471402-102471637(+)$1	1	152	159	12.8750
((((...	chr14:21484914-21485174(-)$1	1	23	30	12.7187
.......	chr3:184041060-184041305(+)$1	1	237	244	12.4062
(((((..	chr17:74732098-74732358(-)$1	1	92	99	16.7031
).)))))	chr3:49049855-49050120(+)$1	1	35	42	13.2656
((((.((	chr2:54872410-54872652(+)$1	1	113	120	16.7031
)))))..	chr11:62300367-62300629(-)$1	1	79	86	12.2500
(.((((.	chr11:62294339-62294593(-)$1	1	133	140	12.9531
(.(((((	chr14:21963401-21963758(+)$1	1	93	100	12.1718
(((((((	chr11:62286607-62286891(-)$1	1	6	13	13.2656
(....((	chr7:77166709-77166969(+)$1	1	11	18	12.7187
((((..(	chr3:50137399-50137681(+)$1	1	68	75	12.1718
)))((((	chr2:232319817-232320081(-)$1	1	50	57	12.7187
)))))))	chr3:58106866-58107093(+)$1	1	103	110	13.5000
).)).))	chr3:184045276-184045524(+)$1	1	150	157	12.7187
.(((...	chr11:62290705-62290942(-)$1	1	139	146	13.5000
)))))))	chr16:11990430-11990691(-)$1	1	183	190	16.7031
.))))((	chr11:62293136-62293424(-)$1	1	116	123	13.2656
(((((((	chr16:4721241-4721505(+)$1	1	66	73	13.2656
..(((.(	chr11:62293237-62293473(-)$1	1	165	172	13.2656
.......	chr14:23528320-23528582(-)$1	1	77	84	12.4062
(.((...	chr17:80397923-80398200(+)$1	1	76	83	13.2656
(.((...	chr11:72423483-72423761(-)$1	1	241	248	16.7031
(((((.(	chr20:40079487-40079739(-)$1	1	19	26	16.7031
(((...(	chr8:48805692-48805933(-)$1	1	24	31	12.5625
)))))..	chr7:5402239-5402489(-)$1	1	100	107	13.2656
)))....	chr16:18849518-18849808(-)$1	1	40	47	12.4062
.......	chr6:86324699-86324961(-)$1	1	102	109	16.7031
)))))).	chr11:62295322-62295566(-)$1	1	104	111	13.2656
....)).	chr2:232320009-232320275(-)$1	1	80	87	13.2656
)).))).	chr2:178081359-178081632(+)$1	1	131	138	13.5000
.))))))	chr12:6700983-6701234(-)$1	1	240	247	12.7187
.((((((	chr6:31785233-31785539(+)$1	1	84	91	16.7031
.......	chr14:32546485-32546788(+)$1	1	24	31	16.7031
(.((.((	chr7:2414097-2414367(+)$1	1	20	27	13.5000
(((....	chr11:61079177-61079481(-)$1	1	111	118	12.7187
)))).))	chr3:58123952-58124189(+)$1	1	88	95	12.1718
)))).))	chrX:53613674-53613914(-)$1	1	153	160	12.5625
)))))))	chr6:32945798-32946030(+)$1	1	163	170	12.2500
......)	chr16:3117320-3117594(+)$1	1	4	11	12.2500
(((...(	chr11:62284171-62284488(-)$1	1	9	16	12.7968
(((..((	chr1:28176899-28177192(+)$1	1	100	107	13.5000

#PSSM
G : 0.84	C : 0.07	A : 0.04	g : 0.03	
A : 0.76	U : 0.15	C : 0.03	a : 0.03	G : 0.01	
G : 0.90	g : 0.03	U : 0.03	A : 0.03	
G : 0.90	A : 0.04	g : 0.01	U : 0.01	a : 0.01	
A : 0.75	G : 0.09	C : 0.09	U : 0.03	a : 0.03	
A : 0.87	G : 0.07	g : 0.01	U : 0.01	a : 0.01	
G : 0.90	A : 0.04	g : 0.03	U : 0.01	

#score	858.21875
#seq	64
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_transcript_m2_run1.nuc.txt

#NT
AUUAUGGUUUCGACUAACAUUAAGUAUACCUUUUUUUGAAUCAACAGGAUGAAACCAAAGGAGAUUAUGAGAAAAUCCUGGUGGCUCUUUGUGGAGGAAACUAAACAUUCCCUUGAUGGUCUCAAGCUAUGAUCAGAAGACUUUAAUUAUAUAUUUUCAUCCUAUAAGCUUAAAUAGGAAAGUUUCUUCAACAGGAUUACAGUGUAGCUACCUACAUGCUGAAAAAUAUAGCCUUUAAAUCAUUUUUAUAUUAUAACUCUGUAUAAUAGAGAUAAGUCCAUUUUUUAAAAAUGUUUUCCCCAAACCAUAAAACCCUAUA	chr9:75784895-75785266(+)$1	371	24	343	439.5000

#otherMatches

#Struct PSSM
ggggg$$$$$ffffff[ccclllccc333ffffffggggggg::::EEEEE:EEEEE:::eeeee[hhhhhhhhgggggggccc[ddddllldddd]ccc7777777ggggggg22hhhhhhhheeeee:::::ggggggg!!bb[gggggggooooooggggggg]bb333ggggggg:EEEEEJJJJJJJJJJJeeeeeuuuuuuuuuuuueeeee::ffffffcccggggggg[bb$$$$$ddddnnnnndddd55555bb22ggggggg333ccc]ffffff:JJJJJJJJJJJ:ffffffnnnnnffffff:::	chr7:158424061-158424404(-)$1	343	4	323	439.5000
KIIIIIIIII{BBKKFFFFFF::CCCKKCCCMMMMEEEEE:::::IIIIIIIIIcccffffff[dddd[bboooooobb]ddddffffff]ccc:ddddqqqqqqqqddddccc!!eeeeerrrrrrrrreeeee]ccc:::::::::::::::IIIIIIIII::ffffffqqqqqqqqffffff:EEEEE}CCCYYCCC:ffffffmmmmffffffddddpppppppdddd::::::::::::::::::::::::fffffflllffffff::::::::::::::::::FFFFFF}BBZZZIIIIIIIIIYYA}DDDD:	chr9:75784895-75785266(+)$1	371	24	343	439.5000

#DB
(((((.....((((((.(((...)))...)))))))))))))....(((((.(((((...(((((.((((((((((((((((((.((((...)))).))).......)))))))..))))))))))))).....(((((((..((.(((((((......))))))).))...))))))).)))))((((((((((((((((............)))))..((((((((((((((((.((.....((((.....)))).....))..)))))))...))).)))))).))))))))))).((((((.....))))))...	chr7:158424061-158424404(-)$1	1	4	323	439.5000
.(((((((((.((..((((((..(((..(((....(((((.....((((((((((((((((((.((((.((......)).)))))))))).))).((((........))))(((..(((((.........))))).)))...............)))))))))..((((((........)))))).))))).)))..))).((((((....))))))((((.......))))........................((((((...))))))..................)))))).))...)))))))))..).)))).	chr9:75784895-75785266(+)$1	1	24	343	439.5000

#PSSM
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
u : 0.50	A : 0.50	
a : 0.50	U : 0.50	
a : 0.50	C : 0.50	
a : 0.50	A : 0.50	
u : 0.50	U : 0.50	
a : 0.50	U : 0.50	
a : 0.50	U : 0.50	
u : 0.50	U : 0.50	
a : 0.50	U : 0.50	
u : 0.50	A : 0.50	
a : 0.50	U : 0.50	
u : 0.50	A : 0.50	
u : 0.50	U : 0.50	
u : 0.50	U : 0.50	
a : 0.50	A : 0.50	
a : 0.50	U : 0.50	
u : 0.50	A : 0.50	
a : 0.50	A : 0.50	
u : 0.50	C : 0.50	
a : 0.50	U : 0.50	
a : 0.50	C : 0.50	
a : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	

#score	879.0
#seq	2
#width	319
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_transcript_m2_run2.nuc.txt

#NT
GUGGGGAGGGG	chr12:133363820-133364118(-)$1	298	6	17	17.4915
GGGGGAAGGGC	chr11:71935000-71935322(+)$1	322	148	159	16.9830
UGGGGCUGGGG	chr17:1648474-1648720(+)$1	246	226	237	19.2711
GGAGGCAGGGG	chr8:144902105-144902362(-)$1	257	68	79	21.4745
GGGGGAAGAGG	chr1:12645447-12645764(-)$1	317	112	123	17.0677
ugGGGGAGGGG	chr6:143265387-143265667(-)$1	280	109	120	18.8474
UGGAGCAGGGG	chr1:230219015-230219378(+)$1	363	62	73	17.5762
GGGAGCAGGGG	chr6:31802728-31802988(+)$1	260	30	41	20.6271
ggcggcggggg	chr7:77166754-77166966(+)$1	212	65	76	18.2542
GGGGGCUUGGG	chr19:1106004-1106246(+)$1	242	104	115	17.6610
GGGGGCUGCGG	chr1:150946631-150946885(-)$1	254	114	125	18.0847
guggggagggg	chr6:48036299-48036526(-)$1	227	63	74	17.4915
GCGGGCAGGGG	chr22:42665904-42666187(-)$1	283	38	49	20.2033
GGGGGCGGGCG	chr11:73308567-73308827(-)$1	260	61	72	17.1525
GGGGUCAGGGG	chr12:132414015-132414269(+)$1	254	200	211	20.3728
UGGGGCAGGGG	chr1:17752916-17753190(-)$1	274	166	177	21.5593
GGAGGCAGCGG	chr3:24535860-24536179(-)$1	319	25	36	17.2372
gggggaaggga	chr16:69165867-69166184(-)$1	317	56	67	17.1525
GGGCGCUgggg	chr9:136214559-136214822(-)$1	263	32	43	18.0847
GGGGGCAGGGA	chr11:63911492-63911845(-)$1	353	326	337	20.5423
GGGGGGAGGGG	chr17:3504171-3504426(-)$1	255	101	112	21.8983
ggggguaggga	chr21:47563074-47563290(-)$1	216	9	20	17.0677
GGGUGCAGGGG	chr10:135214500-135214804(+)$1	304	125	136	20.5423
GGGGGCGGUGG	chr19:17514549-17514806(-)$1	257	99	110	17.6610
gggggccgggg	chr17:38278469-38278735(+)$1	266	5	16	21.3898
GGCGGCAGGGU	chr7:47612789-47613083(-)$1	294	125	136	16.6440
UGGGGCAGGUG	chr17:80587893-80588136(-)$1	243	102	113	16.8135
gggggcagggg	chr2:97535555-97535873(-)$1	318	189	200	24.6101
GGGGGGAGGGG	chr6:32157535-32157786(-)$1	251	46	57	21.8983
GGGGGGAGGGG	chr2:20550455-20550696(-)$1	241	85	96	21.8983
AGGGGCGGGGG	chr16:88777146-88777445(+)$1	299	43	54	18.1694
cggggcagagg	chr8:144615085-144615405(-)$1	320	35	46	16.6440
GGAGGCGGGGG	chr2:219188116-219188424(+)$1	308	100	111	18.7627
GCGGGCUGGGG	chr8:144921636-144921998(-)$1	362	100	111	17.9152
UGGGGCUGGGG	chr3:124303700-124304053(+)$1	353	164	175	19.2711
UGGGGGAGGGG	chr17:45771388-45771626(+)$1	238	197	208	18.8474
GGAGGCAGGGG	chr2:128784662-128784989(-)$1	327	97	108	21.4745
GGGGGGAGGGG	chr6:32938563-32938828(+)$1	265	18	29	21.8983
UGGGCCAGGGG	chr19:1592059-1592322(-)$1	263	59	70	17.3220
ggggggagggg	chr10:46952131-46952414(+)$1	283	65	76	21.8983
gggaguagggg	chr11:1327912-1328213(-)$1	301	80	91	17.1525
GAGGGCGGGGG	chr1:8085971-8086217(-)$1	246	103	114	17.4067
GGGGCCUGGGG	chr3:48452287-48452525(-)$1	238	103	114	18.0847
ggaggcaggga	chr9:136795204-136795510(-)$1	306	10	21	17.4067
GGGUGCUGGGG	chr20:60622890-60623194(-)$1	304	139	150	18.2542
GGAGUCAGGGG	chr1:21934372-21934615(-)$1	243	223	234	17.2372
GGCGGCUGGGG	chr12:7023058-7023394(+)$1	336	291	302	18.6779
GGGUGCUGGGG	chr4:3363789-3364084(+)$1	295	112	123	18.2542
GGGGUGAGGGG	chr19:1399232-1399527(-)$1	295	9	20	17.6610
gggggcagggc	chr20:43040869-43041119(+)$1	250	67	78	20.3728
uggggcauggg	chr13:113760924-113761178(+)$1	254	5	16	16.8983
GGGGGCGGUGG	chr1:1275123-1275372(-)$1	249	121	132	17.6610
UGGGGCUGGGG	chr2:234762669-234763035(-)$1	366	297	308	19.2711
GGAGCCAGGGG	chr20:62696263-62696553(+)$1	290	32	43	17.2372
ggaggcugggg	chr17:7082221-7082452(-)$1	231	138	149	19.1864
GGAGGCAGGGG	chr1:227131709-227132026(+)$1	317	9	20	21.4745
AGGGGCAGAGG	chr4:1721696-1721962(-)$1	266	61	72	16.7288
GGGAGGAGGGG	chr3:13461124-13461401(-)$1	277	108	119	17.9152

#otherMatches

#Struct PSSM
FFFCCC:dddd	chr19:10406356-10406651(+)$1	295	119	130	20.7966
DDDD::::JJJ	chr12:133363820-133364118(-)$1	298	6	17	17.4915
B}FFFFFFYYD	chr11:71935000-71935322(+)$1	322	148	159	16.9830
eeeee22dddd	chr17:1648474-1648720(+)$1	246	226	237	19.2711
b!!cccmmmmc	chr8:144902105-144902362(-)$1	257	68	79	21.4745
QQQQQQQCCCK	chr1:12645447-12645764(-)$1	317	112	123	17.0677
bb[ffffffa[	chr6:143265387-143265667(-)$1	280	109	120	18.8474
ccc]bb4444a	chr1:230219015-230219378(+)$1	363	62	73	17.5762
MMMHHHHHHHH	chr6:31802728-31802988(+)$1	260	30	41	20.6271
ccc[dddd!!a	chr7:77166754-77166966(+)$1	212	65	76	18.2542
====]a:DDDD	chr19:1106004-1106246(+)$1	242	104	115	17.6610
]a]ccca[eee	chr1:150946631-150946885(-)$1	254	114	125	18.0847
:eeeee!!bbm	chr6:48036299-48036526(-)$1	227	63	74	17.4915
[a[a[a[ccc[	chr22:42665904-42666187(-)$1	283	38	49	20.2033
ii&&&&&&&a!	chr11:73308567-73308827(-)$1	260	61	72	17.1525
ccc]bb::::C	chr12:132414015-132414269(+)$1	254	200	211	20.3728
dggggggg[a"	chr1:17752916-17753190(-)$1	274	166	177	21.5593
JJJJJJJ::::	chr3:24535860-24536179(-)$1	319	25	36	17.2372
:::::::::::	chr16:69165867-69166184(-)$1	317	56	67	17.1525
d22ggggggg]	chr9:136214559-136214822(-)$1	263	32	43	18.0847
cc]ccc::A}C	chr11:63911492-63911845(-)$1	353	326	337	20.5423
]a]a55555ff	chr17:3504171-3504426(-)$1	255	101	112	21.8983
EEEE:::::::	chr21:47563074-47563290(-)$1	216	9	20	17.0677
gggg]ccceee	chr10:135214500-135214804(+)$1	304	125	136	20.5423
!!ddddnnnnn	chr19:17514549-17514806(-)$1	257	99	110	17.6610
DFFFFFF{EEE	chr17:38278469-38278735(+)$1	266	5	16	21.3898
ii22affffff	chr7:47612789-47613083(-)$1	294	125	136	16.6440
fff''''''''	chr17:80587893-80588136(-)$1	243	102	113	16.8135
DD{CCC{EEEE	chr2:97535555-97535873(-)$1	318	189	200	24.6101
4444a22eeee	chr6:32157535-32157786(-)$1	251	46	57	21.8983
gggggg]ffff	chr2:20550455-20550696(-)$1	241	85	96	21.8983
44a]ccc22dd	chr16:88777146-88777445(+)$1	299	43	54	18.1694
ff!!bb"""hh	chr8:144615085-144615405(-)$1	320	35	46	16.6440
ebb22cccddd	chr2:219188116-219188424(+)$1	308	100	111	18.7627
g333bbfffff	chr8:144921636-144921998(-)$1	362	100	111	17.9152
ddddddddeee	chr3:124303700-124304053(+)$1	353	164	175	19.2711
eeee[a!!amm	chr17:45771388-45771626(+)$1	238	197	208	18.8474
ffffff]eeee	chr2:128784662-128784989(-)$1	327	97	108	21.4745
GGGGG::ffff	chr6:32938563-32938828(+)$1	265	18	29	21.8983
DDDffffffmm	chr19:1592059-1592322(-)$1	263	59	70	17.3220
33ccc]hhhhh	chr10:46952131-46952414(+)$1	283	65	76	21.8983
:EEEEEKKA{J	chr11:1327912-1328213(-)$1	301	80	91	17.1525
22bbddddddd	chr1:8085971-8086217(-)$1	246	103	114	17.4067
e]bb4444a]g	chr3:48452287-48452525(-)$1	238	103	114	18.0847
NNNCCCOOOOO	chr9:136795204-136795510(-)$1	306	10	21	17.4067
EEEEE}BBGGG	chr20:60622890-60623194(-)$1	304	139	150	18.2542
]a]ccc55555	chr1:21934372-21934615(-)$1	243	223	234	17.2372
[bbpppppppb	chr12:7023058-7023394(+)$1	336	291	302	18.6779
va]eeeee444	chr4:3363789-3364084(+)$1	295	112	123	18.2542
FFFFFffffff	chr19:1399232-1399527(-)$1	295	9	20	17.6610
CCC{CCCKKBB	chr20:43040869-43041119(+)$1	250	67	78	20.3728
:::::::::::	chr13:113760924-113761178(+)$1	254	5	16	16.8983
mmmmdddd333	chr1:1275123-1275372(-)$1	249	121	132	17.6610
mmeeeee5555	chr2:234762669-234763035(-)$1	366	297	308	19.2711
::::ccc[bb#	chr20:62696263-62696553(+)$1	290	32	43	17.2372
pppahhhhhhh	chr17:7082221-7082452(-)$1	231	138	149	19.1864
oooobb:GGGG	chr1:227131709-227132026(+)$1	317	9	20	21.4745
e:a[iiiiiii	chr4:1721696-1721962(-)$1	266	61	72	16.7288
]bb]bb]a]bb	chr3:13461124-13461401(-)$1	277	108	119	17.9152

#DB
)))))).((((	chr19:10406356-10406651(+)$1	1	119	130	20.7966
((((....(((	chr12:133363820-133364118(-)$1	1	6	17	17.4915
).))))))..)	chr11:71935000-71935322(+)$1	1	148	159	16.9830
)))))..))))	chr17:1648474-1648720(+)$1	1	226	237	19.2711
(..(((....)	chr8:144902105-144902362(-)$1	1	68	79	21.4745
.......(((.	chr1:12645447-12645764(-)$1	1	112	123	17.0677
((.(((((((.	chr6:143265387-143265667(-)$1	1	109	120	18.8474
))).))....)	chr1:230219015-230219378(+)$1	1	62	73	17.5762
...((((((((	chr6:31802728-31802988(+)$1	1	30	41	20.6271
(((.((((..(	chr7:77166754-77166966(+)$1	1	65	76	18.2542
)))).).))))	chr19:1106004-1106246(+)$1	1	104	115	17.6610
.).)))(.(((	chr1:150946631-150946885(-)$1	1	114	125	18.0847
.(((((..((.	chr6:48036299-48036526(-)$1	1	63	74	17.4915
.(.(.(.(((.	chr22:42665904-42666187(-)$1	1	38	49	20.2033
((.......(.	chr11:73308567-73308827(-)$1	1	61	72	17.1525
))).))....)	chr12:132414015-132414269(+)$1	1	200	211	20.3728
)(((((((.(.	chr1:17752916-17753190(-)$1	1	166	177	21.5593
(((((((....	chr3:24535860-24536179(-)$1	1	25	36	17.2372
...........	chr16:69165867-69166184(-)$1	1	56	67	17.1525
)..))))))).	chr9:136214559-136214822(-)$1	1	32	43	18.0847
)).)))..).)	chr11:63911492-63911845(-)$1	1	326	337	20.5423
.).).....))	chr17:3504171-3504426(-)$1	1	101	112	21.8983
((((.......	chr21:47563074-47563290(-)$1	1	9	20	17.0677
)))).))))))	chr10:135214500-135214804(+)$1	1	125	136	20.5423
..((((.....	chr19:17514549-17514806(-)$1	1	99	110	17.6610
(((((((.(((	chr17:38278469-38278735(+)$1	1	5	16	21.3898
))..)))))))	chr7:47612789-47613083(-)$1	1	125	136	16.6440
(((........	chr17:80587893-80588136(-)$1	1	102	113	16.8135
((.(((.((((	chr2:97535555-97535873(-)$1	1	189	200	24.6101
....)..))))	chr6:32157535-32157786(-)$1	1	46	57	21.8983
)))))).))))	chr2:20550455-20550696(-)$1	1	85	96	21.8983
..).)))..))	chr16:88777146-88777445(+)$1	1	43	54	18.1694
((..((...((	chr8:144615085-144615405(-)$1	1	35	46	16.6440
)))..))))))	chr2:219188116-219188424(+)$1	1	100	111	18.7627
)...)))))))	chr8:144921636-144921998(-)$1	1	100	111	17.9152
(((((((((((	chr3:124303700-124304053(+)$1	1	164	175	19.2711
((((.(..(..	chr17:45771388-45771626(+)$1	1	197	208	18.8474
)))))).))))	chr2:128784662-128784989(-)$1	1	97	108	21.4745
(((((..((((	chr6:32938563-32938828(+)$1	1	18	29	21.8983
(((((((((..	chr19:1592059-1592322(-)$1	1	59	70	17.3220
..))).)))))	chr10:46952131-46952414(+)$1	1	65	76	21.8983
.(((((..(.(	chr11:1327912-1328213(-)$1	1	80	91	17.1525
..))))))(((	chr1:8085971-8086217(-)$1	1	103	114	17.4067
).))....).)	chr3:48452287-48452525(-)$1	1	103	114	18.0847
...(((.....	chr9:136795204-136795510(-)$1	1	10	21	17.4067
))))).))(((	chr20:60622890-60623194(-)$1	1	139	150	18.2542
.).))).....	chr1:21934372-21934615(-)$1	1	223	234	17.2372
.((.......)	chr12:7023058-7023394(+)$1	1	291	302	18.6779
.).)))))...	chr4:3363789-3364084(+)$1	1	112	123	18.2542
(((((((((((	chr19:1399232-1399527(-)$1	1	9	20	17.6610
(((.(((..((	chr20:43040869-43041119(+)$1	1	67	78	20.3728
...........	chr13:113760924-113761178(+)$1	1	5	16	16.8983
....))))...	chr1:1275123-1275372(-)$1	1	121	132	17.6610
..)))))....	chr2:234762669-234763035(-)$1	1	297	308	19.2711
....(((.((.	chr20:62696263-62696553(+)$1	1	32	43	17.2372
...))))))))	chr17:7082221-7082452(-)$1	1	138	149	19.1864
....)).((((	chr1:227131709-227132026(+)$1	1	9	20	21.4745
).(.(((((((	chr4:1721696-1721962(-)$1	1	61	72	16.7288
.)).)).).))	chr3:13461124-13461401(-)$1	1	108	119	17.9152

#PSSM
G : 0.59	g : 0.18	U : 0.13	u : 0.03	A : 0.03	c : 0.01	
G : 0.69	g : 0.22	C : 0.03	U : 0.01	u : 0.01	A : 0.01	
G : 0.61	g : 0.16	A : 0.11	C : 0.03	a : 0.03	U : 0.01	c : 0.01	
G : 0.66	g : 0.20	A : 0.05	U : 0.05	C : 0.01	a : 0.01	
G : 0.67	g : 0.22	U : 0.05	C : 0.05	
C : 0.59	G : 0.15	c : 0.13	A : 0.03	g : 0.03	u : 0.03	a : 0.01	
A : 0.49	U : 0.18	a : 0.16	G : 0.10	g : 0.01	c : 0.01	u : 0.01	
G : 0.74	g : 0.22	U : 0.01	u : 0.01	
G : 0.66	g : 0.22	A : 0.03	C : 0.03	U : 0.03	a : 0.01	
G : 0.72	g : 0.23	C : 0.01	U : 0.01	
G : 0.71	g : 0.16	a : 0.05	C : 0.01	A : 0.01	U : 0.01	c : 0.01	

#score	1113.440677966101
#seq	59
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_UTR_m3_run2.nuc.txt

#NT
GUG	chr12:14518639-14518858(+)$1	219	128	131	8.9999
GUG	chr19:3576472-3576723(+)$1	251	28	31	8.9999
GUG	chr6:18258438-18258693(-)$1	255	71	74	8.9999
GUG	chr16:89663189-89663426(+)$1	237	27	30	8.9999
GUG	chr7:26251600-26251858(+)$1	258	126	129	8.9999
GUG	chr3:142761858-142762066(+)$1	208	114	117	8.9999
gug	chr7:99036637-99036903(+)$1	266	48	51	8.9999
GUG	chr12:56572169-56572455(-)$1	286	48	51	8.9999
GUG	chr10:103565702-103565907(-)$1	205	13	16	8.9999
GUG	chr2:159519786-159520044(+)$1	258	56	59	8.9999
GUG	chr19:48982284-48982589(+)$1	305	102	105	8.9999
GUG	chr7:139094226-139094481(+)$1	255	213	216	8.9999
GUG	chr20:34501122-34501369(+)$1	247	34	37	8.9999
gug	chr1:29475155-29475435(-)$1	280	149	152	8.9999
GUG	chr7:128038429-128038672(-)$1	243	40	43	8.9999
GUG	chr6:43484978-43485217(+)$1	239	7	10	8.9999
GUG	chr1:100598691-100598999(+)$1	308	99	102	8.9999
GUG	chr9:134334528-134334796(+)$1	268	8	11	8.9999
GUG	chr16:89952155-89952476(+)$1	321	2	5	8.9999
GUG	chr20:2638680-2638945(+)$1	265	135	138	8.9999
gug	chr9:100777618-100777830(+)$1	212	39	42	8.9999
GUG	chr8:110283137-110283409(-)$1	272	105	108	8.9999
GUG	chr5:137902593-137902849(-)$1	256	17	20	8.9999
GUG	chr7:38835009-38835312(-)$1	303	5	8	8.9999
GUG	chr7:86509661-86509937(-)$1	276	57	60	8.9999
GUG	chr6:31785236-31785558(+)$1	322	4	7	8.9999
GUG	chr12:108920071-108920368(-)$1	297	131	134	8.9999
GUG	chr1:32843506-32843749(-)$1	243	17	20	8.9999
GUG	chr17:61907393-61907631(+)$1	238	0	3	8.9999
GUG	chr12:58089680-58089920(+)$1	240	38	41	8.9999
GUG	chr8:117859593-117859841(-)$1	248	59	62	8.9999
GUG	chr16:89350789-89351072(-)$1	283	57	60	8.9999
GUG	chr3:9426266-9426542(+)$1	276	8	11	8.9999
GUG	chr14:104056608-104056904(+)$1	296	175	178	8.9999
GUG	chr10:79800272-79800484(+)$1	212	12	15	8.9999
GUG	chr1:154144444-154144681(-)$1	237	32	35	8.9999
GUG	chr6:31795523-31795835(+)$1	312	41	44	8.9999
GUG	chr11:35684479-35684725(+)$1	246	111	114	8.9999
GUG	chr9:131243764-131244029(+)$1	265	194	197	8.9999
GUG	chr14:55429414-55429671(-)$1	257	121	124	8.9999
GUG	chr9:99589230-99589519(-)$1	289	158	161	8.9999
GUG	chr17:37617677-37618001(+)$1	324	63	66	8.9999
GUG	chr6:52938175-52938476(+)$1	301	10	13	8.9999
GUG	chrX:65392212-65392477(+)$1	265	84	87	8.9999
GUG	chr17:72860323-72860576(-)$1	253	16	19	8.9999
GUG	chr15:64422013-64422305(+)$1	292	108	111	8.9999
GUG	chr8:117864086-117864312(-)$1	226	18	21	8.9999
GUG	chr5:179153647-179153860(+)$1	213	48	51	8.9999
GUG	chr20:60838605-60838847(+)$1	242	11	14	8.9999
GUG	chr7:99621103-99621404(+)$1	301	101	104	8.9999
GUG	chr14:73566273-73566497(+)$1	224	60	63	8.9999
GUG	chr20:60883682-60883965(+)$1	283	8	11	8.9999
GUG	chrX:118763188-118763572(-)$1	384	86	89	8.9999
GUG	chr10:99003686-99003958(-)$1	272	234	237	8.9999
GUG	chr1:40210946-40211236(+)$1	290	13	16	8.9999
GUG	chr1:28564267-28564494(+)$1	227	37	40	8.9999
GUG	chr4:48542676-48542925(-)$1	249	103	106	8.9999
GUG	chr19:10264894-10265154(-)$1	260	172	175	8.9999
GUG	chr15:63340665-63341002(+)$1	337	136	139	8.9999
GUG	chr19:8530152-8530393(+)$1	241	42	45	8.9999
gug	chr6:10924710-10924976(+)$1	266	164	167	8.9999
GUG	chr15:89856090-89856302(+)$1	212	26	29	8.9999
GUG	chr2:233655642-233655926(+)$1	284	126	129	8.9999
GUG	chr2:203103079-203103379(-)$1	300	63	66	8.9999
GUG	chr4:122737824-122738137(+)$1	313	116	119	8.9999
GUG	chr11:77333474-77333794(-)$1	320	189	192	8.9999
GUG	chr7:26232026-26232235(-)$1	209	59	62	8.9999
GUG	chr15:90969241-90969564(+)$1	323	94	97	8.9999
GUG	chr12:133244851-133245156(-)$1	305	9	12	8.9999
GUG	chr3:15373673-15373950(-)$1	277	20	23	8.9999
GUG	chr19:17873478-17873745(+)$1	267	131	134	8.9999
GUG	chr16:255926-256152(-)$1	226	84	87	8.9999
GUG	chr1:93672601-93672854(+)$1	253	114	117	8.9999
GUG	chr15:29345945-29346178(+)$1	233	12	15	8.9999
GUG	chr15:28519477-28519714(-)$1	237	12	15	8.9999
GUG	chr4:113568461-113568738(+)$1	277	59	62	8.9999
GUG	chr2:48023081-48023302(+)$1	221	26	29	8.9999
GUG	chr22:28306848-28307135(-)$1	287	90	93	8.9999
GUG	chr4:83821479-83821729(-)$1	250	5	8	8.9999
GUG	chr5:133561354-133561675(-)$1	321	47	50	8.9999
GUG	chr17:42477526-42477749(-)$1	223	130	133	8.9999
GUG	chr19:12826341-12826574(-)$1	233	51	54	8.9999
GUG	chr5:154173262-154173498(+)$1	236	117	120	8.9999
GUG	chr15:59185932-59186197(-)$1	265	127	130	8.9999
GUG	chr3:15093951-15094207(-)$1	256	13	16	8.9999
GUG	chr11:783945-784195(+)$1	250	69	72	8.9999
GUG	chr10:105205187-105205425(+)$1	238	53	56	8.9999
GUG	chr9:131004415-131004623(+)$1	208	4	7	8.9999
gug	chr5:138699346-138699566(+)$1	220	30	33	8.9999
GUG	chr17:36958883-36959139(-)$1	256	14	17	8.9999
GUG	chr7:105516722-105517044(-)$1	322	66	69	8.9999
GUG	chr12:95425070-95425316(-)$1	246	27	30	8.9999
GUG	chr3:184040089-184040337(+)$1	248	59	62	8.9999
GUG	chr19:59066279-59066527(-)$1	248	23	26	8.9999
GUG	chr5:71490501-71490745(+)$1	244	0	3	8.9999
GUG	chr16:89351884-89352131(-)$1	247	46	49	8.9999

#otherMatches

#Struct PSSM
ccc	chr12:112513386-112513677(-)$1	291	11	14	8.9999
qqq	chr12:14518639-14518858(+)$1	219	128	131	8.9999
]cc	chr19:3576472-3576723(+)$1	251	28	31	8.9999
[bb	chr6:18258438-18258693(-)$1	255	71	74	8.9999
:::	chr16:89663189-89663426(+)$1	237	27	30	8.9999
ccc	chr7:26251600-26251858(+)$1	258	126	129	8.9999
ddd	chr3:142761858-142762066(+)$1	208	114	117	8.9999
fff	chr7:99036637-99036903(+)$1	266	48	51	8.9999
#ee	chr12:56572169-56572455(-)$1	286	48	51	8.9999
d[e	chr10:103565702-103565907(-)$1	205	13	16	8.9999
ddc	chr2:159519786-159520044(+)$1	258	56	59	8.9999
ee[	chr19:48982284-48982589(+)$1	305	102	105	8.9999
uuu	chr7:139094226-139094481(+)$1	255	213	216	8.9999
eec	chr20:34501122-34501369(+)$1	247	34	37	8.9999
bb4	chr1:29475155-29475435(-)$1	280	149	152	8.9999
fff	chr7:128038429-128038672(-)$1	243	40	43	8.9999
c[h	chr6:43484978-43485217(+)$1	239	7	10	8.9999
ggg	chr1:100598691-100598999(+)$1	308	99	102	8.9999
FFF	chr9:134334528-134334796(+)$1	268	8	11	8.9999
:::	chr16:89952155-89952476(+)$1	321	2	5	8.9999
fff	chr20:2638680-2638945(+)$1	265	135	138	8.9999
EEE	chr9:100777618-100777830(+)$1	212	39	42	8.9999
qqq	chr8:110283137-110283409(-)$1	272	105	108	8.9999
ccC	chr5:137902593-137902849(-)$1	256	17	20	8.9999
CCC	chr7:38835009-38835312(-)$1	303	5	8	8.9999
ggc	chr7:86509661-86509937(-)$1	276	57	60	8.9999
fff	chr6:31785236-31785558(+)$1	322	4	7	8.9999
:EE	chr12:108920071-108920368(-)$1	297	131	134	8.9999
cc[	chr1:32843506-32843749(-)$1	243	17	20	8.9999
:EE	chr17:61907393-61907631(+)$1	238	0	3	8.9999
fff	chr12:58089680-58089920(+)$1	240	38	41	8.9999
ddd	chr8:117859593-117859841(-)$1	248	59	62	8.9999
ooo	chr16:89350789-89351072(-)$1	283	57	60	8.9999
BBJ	chr3:9426266-9426542(+)$1	276	8	11	8.9999
c]e	chr14:104056608-104056904(+)$1	296	175	178	8.9999
ggd	chr10:79800272-79800484(+)$1	212	12	15	8.9999
JJJ	chr1:154144444-154144681(-)$1	237	32	35	8.9999
cce	chr6:31795523-31795835(+)$1	312	41	44	8.9999
+++	chr11:35684479-35684725(+)$1	246	111	114	8.9999
mmd	chr9:131243764-131244029(+)$1	265	194	197	8.9999
e44	chr14:55429414-55429671(-)$1	257	121	124	8.9999
iii	chr9:99589230-99589519(-)$1	289	158	161	8.9999
BB{	chr17:37617677-37618001(+)$1	324	63	66	8.9999
::b	chr6:52938175-52938476(+)$1	301	10	13	8.9999
cci	chrX:65392212-65392477(+)$1	265	84	87	8.9999
GGG	chr17:72860323-72860576(-)$1	253	16	19	8.9999
GGG	chr15:64422013-64422305(+)$1	292	108	111	8.9999
ccc	chr8:117864086-117864312(-)$1	226	18	21	8.9999
eee	chr5:179153647-179153860(+)$1	213	48	51	8.9999
EEE	chr20:60838605-60838847(+)$1	242	11	14	8.9999
ddd	chr7:99621103-99621404(+)$1	301	101	104	8.9999
{BB	chr14:73566273-73566497(+)$1	224	60	63	8.9999
EEE	chr20:60883682-60883965(+)$1	283	8	11	8.9999
ffe	chrX:118763188-118763572(-)$1	384	86	89	8.9999
:dd	chr10:99003686-99003958(-)$1	272	234	237	8.9999
HH=	chr1:40210946-40211236(+)$1	290	13	16	8.9999
cc!	chr1:28564267-28564494(+)$1	227	37	40	8.9999
ee[	chr4:48542676-48542925(-)$1	249	103	106	8.9999
DDD	chr19:10264894-10265154(-)$1	260	172	175	8.9999
fff	chr15:63340665-63341002(+)$1	337	136	139	8.9999
===	chr19:8530152-8530393(+)$1	241	42	45	8.9999
EEE	chr6:10924710-10924976(+)$1	266	164	167	8.9999
[a!	chr15:89856090-89856302(+)$1	212	26	29	8.9999
ZCC	chr2:233655642-233655926(+)$1	284	126	129	8.9999
ppp	chr2:203103079-203103379(-)$1	300	63	66	8.9999
ddd	chr4:122737824-122738137(+)$1	313	116	119	8.9999
:::	chr11:77333474-77333794(-)$1	320	189	192	8.9999
eeh	chr7:26232026-26232235(-)$1	209	59	62	8.9999
b]a	chr15:90969241-90969564(+)$1	323	94	97	8.9999
{EE	chr12:133244851-133245156(-)$1	305	9	12	8.9999
eee	chr3:15373673-15373950(-)$1	277	20	23	8.9999
fff	chr19:17873478-17873745(+)$1	267	131	134	8.9999
b[c	chr16:255926-256152(-)$1	226	84	87	8.9999
!dd	chr1:93672601-93672854(+)$1	253	114	117	8.9999
cc!	chr15:29345945-29346178(+)$1	233	12	15	8.9999
HHH	chr15:28519477-28519714(-)$1	237	12	15	8.9999
eee	chr4:113568461-113568738(+)$1	277	59	62	8.9999
!cc	chr2:48023081-48023302(+)$1	221	26	29	8.9999
iii	chr22:28306848-28307135(-)$1	287	90	93	8.9999
bbc	chr4:83821479-83821729(-)$1	250	5	8	8.9999
[a[	chr5:133561354-133561675(-)$1	321	47	50	8.9999
bbv	chr17:42477526-42477749(-)$1	223	130	133	8.9999
dd!	chr19:12826341-12826574(-)$1	233	51	54	8.9999
::G	chr5:154173262-154173498(+)$1	236	117	120	8.9999
ccc	chr15:59185932-59186197(-)$1	265	127	130	8.9999
D{B	chr3:15093951-15094207(-)$1	256	13	16	8.9999
HHH	chr11:783945-784195(+)$1	250	69	72	8.9999
[dd	chr10:105205187-105205425(+)$1	238	53	56	8.9999
===	chr9:131004415-131004623(+)$1	208	4	7	8.9999
fff	chr5:138699346-138699566(+)$1	220	30	33	8.9999
[cc	chr17:36958883-36959139(-)$1	256	14	17	8.9999
"""	chr7:105516722-105517044(-)$1	322	66	69	8.9999
dd=	chr12:95425070-95425316(-)$1	246	27	30	8.9999
c]d	chr3:184040089-184040337(+)$1	248	59	62	8.9999
II{	chr19:59066279-59066527(-)$1	248	23	26	8.9999
:DD	chr5:71490501-71490745(+)$1	244	0	3	8.9999
:cc	chr16:89351884-89352131(-)$1	247	46	49	8.9999

#DB
(((	chr12:112513386-112513677(-)$1	1	11	14	8.9999
...	chr12:14518639-14518858(+)$1	1	128	131	8.9999
.))	chr19:3576472-3576723(+)$1	1	28	31	8.9999
.((	chr6:18258438-18258693(-)$1	1	71	74	8.9999
...	chr16:89663189-89663426(+)$1	1	27	30	8.9999
(((	chr7:26251600-26251858(+)$1	1	126	129	8.9999
)))	chr3:142761858-142762066(+)$1	1	114	117	8.9999
(((	chr7:99036637-99036903(+)$1	1	48	51	8.9999
.((	chr12:56572169-56572455(-)$1	1	48	51	8.9999
(.(	chr10:103565702-103565907(-)$1	1	13	16	8.9999
(((	chr2:159519786-159520044(+)$1	1	56	59	8.9999
((.	chr19:48982284-48982589(+)$1	1	102	105	8.9999
...	chr7:139094226-139094481(+)$1	1	213	216	8.9999
(((	chr20:34501122-34501369(+)$1	1	34	37	8.9999
)).	chr1:29475155-29475435(-)$1	1	149	152	8.9999
)))	chr7:128038429-128038672(-)$1	1	40	43	8.9999
(.(	chr6:43484978-43485217(+)$1	1	7	10	8.9999
(((	chr1:100598691-100598999(+)$1	1	99	102	8.9999
(((	chr9:134334528-134334796(+)$1	1	8	11	8.9999
...	chr16:89952155-89952476(+)$1	1	2	5	8.9999
)))	chr20:2638680-2638945(+)$1	1	135	138	8.9999
(((	chr9:100777618-100777830(+)$1	1	39	42	8.9999
...	chr8:110283137-110283409(-)$1	1	105	108	8.9999
))(	chr5:137902593-137902849(-)$1	1	17	20	8.9999
(((	chr7:38835009-38835312(-)$1	1	5	8	8.9999
(((	chr7:86509661-86509937(-)$1	1	57	60	8.9999
(((	chr6:31785236-31785558(+)$1	1	4	7	8.9999
.((	chr12:108920071-108920368(-)$1	1	131	134	8.9999
((.	chr1:32843506-32843749(-)$1	1	17	20	8.9999
.((	chr17:61907393-61907631(+)$1	1	0	3	8.9999
(((	chr12:58089680-58089920(+)$1	1	38	41	8.9999
(((	chr8:117859593-117859841(-)$1	1	59	62	8.9999
...	chr16:89350789-89351072(-)$1	1	57	60	8.9999
(((	chr3:9426266-9426542(+)$1	1	8	11	8.9999
).)	chr14:104056608-104056904(+)$1	1	175	178	8.9999
(((	chr10:79800272-79800484(+)$1	1	12	15	8.9999
(((	chr1:154144444-154144681(-)$1	1	32	35	8.9999
)))	chr6:31795523-31795835(+)$1	1	41	44	8.9999
...	chr11:35684479-35684725(+)$1	1	111	114	8.9999
..)	chr9:131243764-131244029(+)$1	1	194	197	8.9999
)..	chr14:55429414-55429671(-)$1	1	121	124	8.9999
(((	chr9:99589230-99589519(-)$1	1	158	161	8.9999
((.	chr17:37617677-37618001(+)$1	1	63	66	8.9999
..(	chr6:52938175-52938476(+)$1	1	10	13	8.9999
))(	chrX:65392212-65392477(+)$1	1	84	87	8.9999
(((	chr17:72860323-72860576(-)$1	1	16	19	8.9999
)))	chr15:64422013-64422305(+)$1	1	108	111	8.9999
(((	chr8:117864086-117864312(-)$1	1	18	21	8.9999
)))	chr5:179153647-179153860(+)$1	1	48	51	8.9999
(((	chr20:60838605-60838847(+)$1	1	11	14	8.9999
(((	chr7:99621103-99621404(+)$1	1	101	104	8.9999
.((	chr14:73566273-73566497(+)$1	1	60	63	8.9999
(((	chr20:60883682-60883965(+)$1	1	8	11	8.9999
))(	chrX:118763188-118763572(-)$1	1	86	89	8.9999
.((	chr10:99003686-99003958(-)$1	1	234	237	8.9999
(((	chr1:40210946-40211236(+)$1	1	13	16	8.9999
((.	chr1:28564267-28564494(+)$1	1	37	40	8.9999
((.	chr4:48542676-48542925(-)$1	1	103	106	8.9999
)))	chr19:10264894-10265154(-)$1	1	172	175	8.9999
)))	chr15:63340665-63341002(+)$1	1	136	139	8.9999
(((	chr19:8530152-8530393(+)$1	1	42	45	8.9999
)))	chr6:10924710-10924976(+)$1	1	164	167	8.9999
.(.	chr15:89856090-89856302(+)$1	1	26	29	8.9999
.))	chr2:233655642-233655926(+)$1	1	126	129	8.9999
...	chr2:203103079-203103379(-)$1	1	63	66	8.9999
(((	chr4:122737824-122738137(+)$1	1	116	119	8.9999
...	chr11:77333474-77333794(-)$1	1	189	192	8.9999
)))	chr7:26232026-26232235(-)$1	1	59	62	8.9999
).)	chr15:90969241-90969564(+)$1	1	94	97	8.9999
.((	chr12:133244851-133245156(-)$1	1	9	12	8.9999
)))	chr3:15373673-15373950(-)$1	1	20	23	8.9999
(((	chr19:17873478-17873745(+)$1	1	131	134	8.9999
(.(	chr16:255926-256152(-)$1	1	84	87	8.9999
.((	chr1:93672601-93672854(+)$1	1	114	117	8.9999
((.	chr15:29345945-29346178(+)$1	1	12	15	8.9999
(((	chr15:28519477-28519714(-)$1	1	12	15	8.9999
)))	chr4:113568461-113568738(+)$1	1	59	62	8.9999
.((	chr2:48023081-48023302(+)$1	1	26	29	8.9999
(((	chr22:28306848-28307135(-)$1	1	90	93	8.9999
(((	chr4:83821479-83821729(-)$1	1	5	8	8.9999
.(.	chr5:133561354-133561675(-)$1	1	47	50	8.9999
((.	chr17:42477526-42477749(-)$1	1	130	133	8.9999
((.	chr19:12826341-12826574(-)$1	1	51	54	8.9999
..(	chr5:154173262-154173498(+)$1	1	117	120	8.9999
(((	chr15:59185932-59186197(-)$1	1	127	130	8.9999
(.(	chr3:15093951-15094207(-)$1	1	13	16	8.9999
(((	chr11:783945-784195(+)$1	1	69	72	8.9999
.((	chr10:105205187-105205425(+)$1	1	53	56	8.9999
(((	chr9:131004415-131004623(+)$1	1	4	7	8.9999
)))	chr5:138699346-138699566(+)$1	1	30	33	8.9999
.((	chr17:36958883-36959139(-)$1	1	14	17	8.9999
...	chr7:105516722-105517044(-)$1	1	66	69	8.9999
))(	chr12:95425070-95425316(-)$1	1	27	30	8.9999
).)	chr3:184040089-184040337(+)$1	1	59	62	8.9999
((.	chr19:59066279-59066527(-)$1	1	23	26	8.9999
.((	chr5:71490501-71490745(+)$1	1	0	3	8.9999
.((	chr16:89351884-89352131(-)$1	1	46	49	8.9999

#PSSM
G : 0.94	g : 0.05	
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_CDS_m2_run2.nuc.txt

#NT
CCUG	chr11:6503271-6503534(+)$1	263	7	11	11.9999
CCUG	chr3:120363105-120363354(-)$1	249	109	113	11.9999
CCUG	chr14:24035133-24035392(-)$1	259	9	13	11.9999
CCUG	chr3:183882549-183882851(+)$1	302	27	31	11.9999
CCUG	chr2:61697693-61697962(-)$1	269	155	159	11.9999
CCUG	chr19:36303178-36303469(-)$1	291	18	22	11.9999
CCUG	chr11:290938-291233(+)$1	295	15	19	11.9999
CCUG	chr9:117062804-117063053(+)$1	249	106	110	11.9999
CCUG	chr20:42086987-42087244(+)$1	257	200	204	11.9999
CCUG	chr1:16891220-16891509(-)$1	289	4	8	11.9999
CCUG	chr6:31914702-31914960(+)$1	258	213	217	11.9999
CCUG	chr2:54197690-54197988(-)$1	298	58	62	11.9999
CCUG	chr6:158475895-158476166(+)$1	271	135	139	11.9999
CCUG	chr20:3194531-3194794(+)$1	263	18	22	11.9999
CCUG	chr20:31608086-31608305(+)$1	219	25	29	11.9999
CCUG	chr14:70235844-70236083(+)$1	239	64	68	11.9999
CCUG	chr7:1024821-1025053(+)$1	232	83	87	11.9999
CCUG	chr20:39791787-39792024(+)$1	237	48	52	11.9999
CCUG	chr12:104332088-104332337(+)$1	249	167	171	11.9999
CCUG	chr17:7127062-7127296(+)$1	234	76	80	11.9999
CCUG	chr6:158480200-158480483(+)$1	283	43	47	11.9999
CCUG	chr11:124492743-124493223(+)$1	480	83	87	11.9999
CCUG	chr3:119217535-119217842(+)$1	307	6	10	11.9999
CCUG	chr4:1805370-1805601(+)$1	231	130	134	11.9999
CCUG	chr16:15127067-15127357(+)$1	290	69	73	11.9999
CCUG	chr13:107211681-107211958(-)$1	277	245	249	11.9999
CCUG	chr21:47565277-47565533(-)$1	256	10	14	11.9999
CCUG	chr2:27720127-27720366(+)$1	239	123	127	11.9999
CCUG	chr17:39975427-39975697(+)$1	270	77	81	11.9999
CCUG	chr3:48670835-48671078(-)$1	243	55	59	11.9999
CCUG	chr17:73872319-73872583(-)$1	264	1	5	11.9999
CCUG	chr14:39554916-39555182(-)$1	266	145	149	11.9999
CCUG	chr5:176516793-176517026(+)$1	233	2	6	11.9999
CCUG	chr1:12677133-12677386(-)$1	253	8	12	11.9999
CCUG	chr17:73975010-73975276(-)$1	266	20	24	11.9999
CCUG	chr22:38902004-38902249(-)$1	245	6	10	11.9999
CCUG	chr17:79969351-79969576(+)$1	225	98	102	11.9999
CCUG	chr11:70644448-70644751(-)$1	303	1	5	11.9999
CCUG	chr12:132414477-132414768(+)$1	291	42	46	11.9999
CCUG	chr20:39791916-39792143(+)$1	227	55	59	11.9999
CCUG	chr6:31507998-31508221(-)$1	223	61	65	11.9999
ccug	chr12:104341060-104341309(+)$1	249	52	56	11.9999
CCUG	chr3:49051298-49051599(+)$1	301	59	63	11.9999
CCUG	chr20:61593940-61594182(+)$1	242	7	11	11.9999
CCUG	chr19:15508480-15508732(-)$1	252	20	24	11.9999
CCUG	chr14:103571245-103571495(+)$1	250	7	11	11.9999
CCUG	chr11:64681220-64681494(-)$1	274	24	28	11.9999
CCUG	chr16:8891663-8891920(+)$1	257	85	89	11.9999
CCUG	chr17:7530780-7531109(-)$1	329	122	126	11.9999
CCUG	chr20:4843382-4843647(-)$1	265	63	67	11.9999
CCUG	chr6:31698535-31698810(-)$1	275	130	134	11.9999
CCUG	chr3:66023530-66023816(-)$1	286	222	226	11.9999
CCUG	chr20:61594922-61595133(+)$1	211	42	46	11.9999
CCUG	chr12:57499150-57499421(-)$1	271	7	11	11.9999
CCUG	chr6:7579646-7579956(+)$1	310	10	14	11.9999
CCUG	chr12:7260740-7261023(-)$1	283	137	141	11.9999
CCUG	chr2:54197788-54198046(-)$1	258	116	120	11.9999
CCUG	chr20:34220613-34220899(-)$1	286	22	26	11.9999
CCUG	chr20:61594882-61595122(+)$1	240	82	86	11.9999
CCUG	chr1:53370606-53370864(-)$1	258	253	257	11.9999
CCUG	chr20:61916150-61916384(+)$1	234	87	91	11.9999
CCUG	chr22:46751244-46751589(+)$1	345	119	123	11.9999
CCUG	chr14:74759762-74760043(-)$1	281	62	66	11.9999
CCUG	chr3:149374545-149374849(-)$1	304	34	38	11.9999
ccug	chr1:20811675-20811970(-)$1	295	34	38	11.9999
CCUG	chr2:27448985-27449246(+)$1	261	111	115	11.9999
CCUG	chr16:75270541-75270835(-)$1	294	31	35	11.9999
CCUG	chr14:23538691-23538929(-)$1	238	17	21	11.9999
CCUG	chr1:70687374-70687639(+)$1	265	173	177	11.9999
CCUG	chr12:104341309-104341527(+)$1	218	35	39	11.9999
CCUG	chr17:79969318-79969551(+)$1	233	131	135	11.9999
CCUG	chr8:618602-618873(-)$1	271	181	185	11.9999
CCUG	chr14:103568401-103568671(+)$1	270	44	48	11.9999
CCUG	chr6:158487527-158487774(+)$1	247	29	33	11.9999
CCUG	chr2:233740584-233740872(+)$1	288	15	19	11.9999
CCUG	chr1:146684699-146684996(-)$1	297	118	122	11.9999
CCUG	chr20:17930883-17931147(-)$1	264	253	257	11.9999
CCUG	chr10:105386791-105387023(-)$1	232	12	16	11.9999

#otherMatches

#Struct PSSM
$$$e	chr17:79954214-79954484(+)$1	270	10	14	11.9999
D{BB	chr11:6503271-6503534(+)$1	263	7	11	11.9999
FFFe	chr3:120363105-120363354(-)$1	249	109	113	11.9999
pppp	chr14:24035133-24035392(-)$1	259	9	13	11.9999
fff"	chr3:183882549-183882851(+)$1	302	27	31	11.9999
44cc	chr2:61697693-61697962(-)$1	269	155	159	11.9999
EEEE	chr19:36303178-36303469(-)$1	291	18	22	11.9999
!!ee	chr11:290938-291233(+)$1	295	15	19	11.9999
dddd	chr9:117062804-117063053(+)$1	249	106	110	11.9999
====	chr20:42086987-42087244(+)$1	257	200	204	11.9999
DDD{	chr1:16891220-16891509(-)$1	289	4	8	11.9999
[a[d	chr6:31914702-31914960(+)$1	258	213	217	11.9999
eee]	chr2:54197690-54197988(-)$1	298	58	62	11.9999
44cc	chr6:158475895-158476166(+)$1	271	135	139	11.9999
d:EE	chr20:3194531-3194794(+)$1	263	18	22	11.9999
EEEE	chr20:31608086-31608305(+)$1	219	25	29	11.9999
:hhh	chr14:70235844-70236083(+)$1	239	64	68	11.9999
ccmm	chr7:1024821-1025053(+)$1	232	83	87	11.9999
fffb	chr20:39791787-39792024(+)$1	237	48	52	11.9999
cddd	chr12:104332088-104332337(+)$1	249	167	171	11.9999
eeee	chr17:7127062-7127296(+)$1	234	76	80	11.9999
eeee	chr6:158480200-158480483(+)$1	283	43	47	11.9999
dccc	chr11:124492743-124493223(+)$1	480	83	87	11.9999
:DDD	chr3:119217535-119217842(+)$1	307	6	10	11.9999
nbb]	chr4:1805370-1805601(+)$1	231	130	134	11.9999
FFFF	chr16:15127067-15127357(+)$1	290	69	73	11.9999
EEDD	chr13:107211681-107211958(-)$1	277	245	249	11.9999
FFFF	chr21:47565277-47565533(-)$1	256	10	14	11.9999
ccc]	chr2:27720127-27720366(+)$1	239	123	127	11.9999
JJJJ	chr17:39975427-39975697(+)$1	270	77	81	11.9999
dddd	chr3:48670835-48671078(-)$1	243	55	59	11.9999
::::	chr17:73872319-73872583(-)$1	264	1	5	11.9999
oooo	chr14:39554916-39555182(-)$1	266	145	149	11.9999
ffff	chr5:176516793-176517026(+)$1	233	2	6	11.9999
DDDg	chr1:12677133-12677386(-)$1	253	8	12	11.9999
HHH:	chr17:73975010-73975276(-)$1	266	20	24	11.9999
EEEE	chr22:38902004-38902249(-)$1	245	6	10	11.9999
EE:f	chr17:79969351-79969576(+)$1	225	98	102	11.9999
GGGG	chr11:70644448-70644751(-)$1	303	1	5	11.9999
fff:	chr12:132414477-132414768(+)$1	291	42	46	11.9999
dddd	chr20:39791916-39792143(+)$1	227	55	59	11.9999
qqqb	chr6:31507998-31508221(-)$1	223	61	65	11.9999
eeee	chr12:104341060-104341309(+)$1	249	52	56	11.9999
CCLL	chr3:49051298-49051599(+)$1	301	59	63	11.9999
f!!d	chr20:61593940-61594182(+)$1	242	7	11	11.9999
BKKB	chr19:15508480-15508732(-)$1	252	20	24	11.9999
ggg!	chr14:103571245-103571495(+)$1	250	7	11	11.9999
FFPP	chr11:64681220-64681494(-)$1	274	24	28	11.9999
bccc	chr16:8891663-8891920(+)$1	257	85	89	11.9999
Dggg	chr17:7530780-7531109(-)$1	329	122	126	11.9999
pppp	chr20:4843382-4843647(-)$1	265	63	67	11.9999
GGGG	chr6:31698535-31698810(-)$1	275	130	134	11.9999
IIII	chr3:66023530-66023816(-)$1	286	222	226	11.9999
b!!f	chr20:61594922-61595133(+)$1	211	42	46	11.9999
EEEE	chr12:57499150-57499421(-)$1	271	7	11	11.9999
ffff	chr6:7579646-7579956(+)$1	310	10	14	11.9999
gggg	chr12:7260740-7261023(-)$1	283	137	141	11.9999
eee]	chr2:54197788-54198046(-)$1	258	116	120	11.9999
qqqq	chr20:34220613-34220899(-)$1	286	22	26	11.9999
CC:f	chr20:61594882-61595122(+)$1	240	82	86	11.9999
BB::	chr1:53370606-53370864(-)$1	258	253	257	11.9999
d]bb	chr20:61916150-61916384(+)$1	234	87	91	11.9999
tddd	chr22:46751244-46751589(+)$1	345	119	123	11.9999
JJJJ	chr14:74759762-74760043(-)$1	281	62	66	11.9999
"""b	chr3:149374545-149374849(-)$1	304	34	38	11.9999
iiii	chr1:20811675-20811970(-)$1	295	34	38	11.9999
CC{A	chr2:27448985-27449246(+)$1	261	111	115	11.9999
CCCB	chr16:75270541-75270835(-)$1	294	31	35	11.9999
mmme	chr14:23538691-23538929(-)$1	238	17	21	11.9999
f22d	chr1:70687374-70687639(+)$1	265	173	177	11.9999
mmdd	chr12:104341309-104341527(+)$1	218	35	39	11.9999
EDDD	chr17:79969318-79969551(+)$1	233	131	135	11.9999
b[cc	chr8:618602-618873(-)$1	271	181	185	11.9999
BB{I	chr14:103568401-103568671(+)$1	270	44	48	11.9999
]eee	chr6:158487527-158487774(+)$1	247	29	33	11.9999
eee:	chr2:233740584-233740872(+)$1	288	15	19	11.9999
ehhh	chr1:146684699-146684996(-)$1	297	118	122	11.9999
dfff	chr20:17930883-17931147(-)$1	264	253	257	11.9999
ffff	chr10:105386791-105387023(-)$1	232	12	16	11.9999

#DB
...(	chr17:79954214-79954484(+)$1	1	10	14	11.9999
(.((	chr11:6503271-6503534(+)$1	1	7	11	11.9999
((((	chr3:120363105-120363354(-)$1	1	109	113	11.9999
....	chr14:24035133-24035392(-)$1	1	9	13	11.9999
(((.	chr3:183882549-183882851(+)$1	1	27	31	11.9999
..))	chr2:61697693-61697962(-)$1	1	155	159	11.9999
((((	chr19:36303178-36303469(-)$1	1	18	22	11.9999
..((	chr11:290938-291233(+)$1	1	15	19	11.9999
((((	chr9:117062804-117063053(+)$1	1	106	110	11.9999
))))	chr20:42086987-42087244(+)$1	1	200	204	11.9999
(((.	chr1:16891220-16891509(-)$1	1	4	8	11.9999
.(.(	chr6:31914702-31914960(+)$1	1	213	217	11.9999
))).	chr2:54197690-54197988(-)$1	1	58	62	11.9999
..))	chr6:158475895-158476166(+)$1	1	135	139	11.9999
).((	chr20:3194531-3194794(+)$1	1	18	22	11.9999
((((	chr20:31608086-31608305(+)$1	1	25	29	11.9999
.(((	chr14:70235844-70236083(+)$1	1	64	68	11.9999
((..	chr7:1024821-1025053(+)$1	1	83	87	11.9999
((((	chr20:39791787-39792024(+)$1	1	48	52	11.9999
))))	chr12:104332088-104332337(+)$1	1	167	171	11.9999
))))	chr17:7127062-7127296(+)$1	1	76	80	11.9999
))))	chr6:158480200-158480483(+)$1	1	43	47	11.9999
((((	chr11:124492743-124493223(+)$1	1	83	87	11.9999
.(((	chr3:119217535-119217842(+)$1	1	6	10	11.9999
.)).	chr4:1805370-1805601(+)$1	1	130	134	11.9999
((((	chr16:15127067-15127357(+)$1	1	69	73	11.9999
))))	chr13:107211681-107211958(-)$1	1	245	249	11.9999
((((	chr21:47565277-47565533(-)$1	1	10	14	11.9999
))).	chr2:27720127-27720366(+)$1	1	123	127	11.9999
((((	chr17:39975427-39975697(+)$1	1	77	81	11.9999
((((	chr3:48670835-48671078(-)$1	1	55	59	11.9999
....	chr17:73872319-73872583(-)$1	1	1	5	11.9999
....	chr14:39554916-39555182(-)$1	1	145	149	11.9999
((((	chr5:176516793-176517026(+)$1	1	2	6	11.9999
((((	chr1:12677133-12677386(-)$1	1	8	12	11.9999
(((.	chr17:73975010-73975276(-)$1	1	20	24	11.9999
((((	chr22:38902004-38902249(-)$1	1	6	10	11.9999
)).(	chr17:79969351-79969576(+)$1	1	98	102	11.9999
((((	chr11:70644448-70644751(-)$1	1	1	5	11.9999
))).	chr12:132414477-132414768(+)$1	1	42	46	11.9999
((((	chr20:39791916-39792143(+)$1	1	55	59	11.9999
...)	chr6:31507998-31508221(-)$1	1	61	65	11.9999
))))	chr12:104341060-104341309(+)$1	1	52	56	11.9999
((..	chr3:49051298-49051599(+)$1	1	59	63	11.9999
(..(	chr20:61593940-61594182(+)$1	1	7	11	11.9999
(..(	chr19:15508480-15508732(-)$1	1	20	24	11.9999
(((.	chr14:103571245-103571495(+)$1	1	7	11	11.9999
((..	chr11:64681220-64681494(-)$1	1	24	28	11.9999
((((	chr16:8891663-8891920(+)$1	1	85	89	11.9999
((((	chr17:7530780-7531109(-)$1	1	122	126	11.9999
....	chr20:4843382-4843647(-)$1	1	63	67	11.9999
))))	chr6:31698535-31698810(-)$1	1	130	134	11.9999
))))	chr3:66023530-66023816(-)$1	1	222	226	11.9999
(..(	chr20:61594922-61595133(+)$1	1	42	46	11.9999
((((	chr12:57499150-57499421(-)$1	1	7	11	11.9999
((((	chr6:7579646-7579956(+)$1	1	10	14	11.9999
))))	chr12:7260740-7261023(-)$1	1	137	141	11.9999
))).	chr2:54197788-54198046(-)$1	1	116	120	11.9999
....	chr20:34220613-34220899(-)$1	1	22	26	11.9999
)).(	chr20:61594882-61595122(+)$1	1	82	86	11.9999
))..	chr1:53370606-53370864(-)$1	1	253	257	11.9999
).))	chr20:61916150-61916384(+)$1	1	87	91	11.9999
.)))	chr22:46751244-46751589(+)$1	1	119	123	11.9999
((((	chr14:74759762-74760043(-)$1	1	62	66	11.9999
...(	chr3:149374545-149374849(-)$1	1	34	38	11.9999
((((	chr1:20811675-20811970(-)$1	1	34	38	11.9999
((.(	chr2:27448985-27449246(+)$1	1	111	115	11.9999
((((	chr16:75270541-75270835(-)$1	1	31	35	11.9999
...)	chr14:23538691-23538929(-)$1	1	17	21	11.9999
)..)	chr1:70687374-70687639(+)$1	1	173	177	11.9999
..))	chr12:104341309-104341527(+)$1	1	35	39	11.9999
))))	chr17:79969318-79969551(+)$1	1	131	135	11.9999
(.((	chr8:618602-618873(-)$1	1	181	185	11.9999
((.(	chr14:103568401-103568671(+)$1	1	44	48	11.9999
.)))	chr6:158487527-158487774(+)$1	1	29	33	11.9999
))).	chr2:233740584-233740872(+)$1	1	15	19	11.9999
((((	chr1:146684699-146684996(-)$1	1	118	122	11.9999
))))	chr20:17930883-17931147(-)$1	1	253	257	11.9999
((((	chr10:105386791-105387023(-)$1	1	12	16	11.9999

#PSSM
C : 0.96	c : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	

#score	947.9999999999998
#seq	79
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_transcript_m2_run1.nuc.txt

#NT
CAGA	chr1:94313076-94313318(+)$1	242	27	31	11.9999
CAGA	chr1:169076104-169076327(+)$1	223	18	22	11.9999
CAGA	chr14:50695235-50695439(-)$1	204	2	6	11.9999
CAGA	chr14:50695239-50695456(-)$1	217	19	23	11.9999
caga	chr7:149286059-149286268(-)$1	209	66	70	11.9999
CAGA	chrM:12060-12299(+)$1	239	102	106	11.9999
caga	chr19:45981754-45981957(-)$1	203	70	74	11.9999
CAGA	chr10:128256268-128256476(-)$1	208	94	98	11.9999
CAGA	chr20:62597556-62597772(-)$1	216	189	193	11.9999
CAGA	chr17:26919458-26919700(-)$1	242	205	209	11.9999
caga	chr2:97535492-97535811(-)$1	319	78	82	11.9999
CAGA	chr10:43492980-43493190(+)$1	210	21	25	11.9999
caga	chr19:45981775-45981998(-)$1	223	111	115	11.9999
caga	chr6:31958179-31958383(+)$1	204	68	72	11.9999
caga	chr7:149286068-149286300(-)$1	232	98	102	11.9999
caga	chr11:106689566-106689778(-)$1	212	200	204	11.9999
caga	chr18:1691755-1691965(+)$1	210	68	72	11.9999
CAGA	chrX:16185913-16186162(-)$1	249	66	70	11.9999
caga	chr15:89878243-89878480(+)$1	237	99	103	11.9999
CAGA	chr10:43492990-43493201(+)$1	211	11	15	11.9999
CAGA	chr17:8125488-8125719(-)$1	231	9	13	11.9999
caga	chr7:149292176-149292421(-)$1	245	78	82	11.9999
CAGA	chr1:45187452-45187665(-)$1	213	89	93	11.9999
caga	chr10:18934731-18934984(-)$1	253	27	31	11.9999
CAGA	chr17:26919409-26919658(-)$1	249	163	167	11.9999
CAGA	chr10:128256276-128256488(-)$1	212	106	110	11.9999
caga	chr3:45730378-45730589(-)$1	211	65	69	11.9999
CAGA	chr17:33430286-33430572(-)$1	286	90	94	11.9999
CAGA	chr11:72414339-72414544(-)$1	205	106	110	11.9999
CAGA	chr19:14280678-14280944(-)$1	266	38	42	11.9999
caga	chr19:45981798-45982021(-)$1	223	134	138	11.9999
caga	chr11:109641715-109641919(-)$1	204	163	167	11.9999
CAGA	chr2:27274018-27274235(+)$1	217	161	165	11.9999
CAGA	chr20:36026940-36027238(+)$1	298	19	23	11.9999
CAGA	chr20:62597553-62597756(-)$1	203	173	177	11.9999
CAGA	chr10:81074843-81075127(+)$1	284	96	100	11.9999
CAGA	chr4:39460410-39460632(-)$1	222	89	93	11.9999
CAGA	chr19:30804045-30804269(+)$1	224	53	57	11.9999
CAGA	chr10:64573513-64573723(-)$1	210	28	32	11.9999
CAGA	chr15:74222564-74222772(+)$1	208	188	192	11.9999
CAGA	chr15:45492508-45492745(-)$1	237	14	18	11.9999
CAGA	chr1:16993335-16993541(-)$1	206	81	85	11.9999
CAGA	chr9:138901415-138901662(-)$1	247	205	209	11.9999
CAGA	chr11:9481795-9482048(-)$1	253	25	29	11.9999
CAGA	chr11:75115118-75115352(+)$1	234	27	31	11.9999
CAGA	chr11:62293169-62293424(-)$1	255	12	16	11.9999
CAGA	chr1:45187465-45187674(-)$1	209	98	102	11.9999
caga	chr1:151175393-151175644(+)$1	251	40	44	11.9999
CAGA	chr6:34555094-34555366(-)$1	272	61	65	11.9999
CAGA	chrX:71284303-71284524(+)$1	221	121	125	11.9999
CAGA	chr12:1948154-1948380(-)$1	226	46	50	11.9999
CAGA	chr13:92000503-92000748(+)$1	245	153	157	11.9999
CAGA	chrX:16185864-16186100(-)$1	236	4	8	11.9999
CAGA	chr11:618785-618994(-)$1	209	6	10	11.9999
CAGA	chrM:12180-12398(+)$1	218	1	5	11.9999
caga	chr19:45981771-45981975(-)$1	204	88	92	11.9999
CAGA	chr7:139025376-139025600(+)$1	224	64	68	11.9999
caga	chr10:18934784-18935039(-)$1	255	82	86	11.9999
CAGA	chr16:18800293-18800542(-)$1	249	9	13	11.9999
caga	chr3:45730391-45730627(-)$1	236	103	107	11.9999
CAGA	chr11:72414344-72414560(-)$1	216	122	126	11.9999
CAGA	chrM:12107-12350(+)$1	243	55	59	11.9999
CAGA	chr1:227087874-227088080(+)$1	206	69	73	11.9999
CAGA	chr1:45242081-45242307(+)$1	226	7	11	11.9999
caga	chr15:66069976-66070236(-)$1	260	55	59	11.9999
CAGA	chr4:39459954-39460161(-)$1	207	98	102	11.9999
CAGA	chr10:64573524-64573735(-)$1	211	8	12	11.9999
CAGA	chr22:17091062-17091320(+)$1	258	177	181	11.9999
CAGA	chrM:12176-12380(+)$1	204	5	9	11.9999
CAGA	chr12:48153597-48153819(+)$1	222	50	54	11.9999
CAGA	chrX:16185900-16186113(-)$1	213	17	21	11.9999
caga	chr19:45981757-45981971(-)$1	214	84	88	11.9999
CAGA	chr19:1990564-1990788(-)$1	224	31	35	11.9999
CAGA	chr13:41634780-41635001(-)$1	221	6	10	11.9999
caga	chr15:89878240-89878443(+)$1	203	102	106	11.9999
CAGA	chr22:20110946-20111199(+)$1	253	112	116	11.9999
CAGA	chr9:19380096-19380331(-)$1	235	197	201	11.9999
CAGA	chr20:37393626-37393910(+)$1	284	156	160	11.9999

#otherMatches

#Struct PSSM
fqqq	chr11:618794-619008(-)$1	214	20	24	11.9999
EEii	chr1:94313076-94313318(+)$1	242	27	31	11.9999
uuuu	chr1:169076104-169076327(+)$1	223	18	22	11.9999
gggg	chr14:50695235-50695439(-)$1	204	2	6	11.9999
gggg	chr14:50695239-50695456(-)$1	217	19	23	11.9999
g22c	chr7:149286059-149286268(-)$1	209	66	70	11.9999
gggg	chrM:12060-12299(+)$1	239	102	106	11.9999
eee:	chr19:45981754-45981957(-)$1	203	70	74	11.9999
3hhh	chr10:128256268-128256476(-)$1	208	94	98	11.9999
77cc	chr20:62597556-62597772(-)$1	216	189	193	11.9999
ddcc	chr17:26919458-26919700(-)$1	242	205	209	11.9999
A:::	chr2:97535492-97535811(-)$1	319	78	82	11.9999
KCCC	chr10:43492980-43493190(+)$1	210	21	25	11.9999
eee:	chr19:45981775-45981998(-)$1	223	111	115	11.9999
eeee	chr6:31958179-31958383(+)$1	204	68	72	11.9999
pppp	chr7:149286068-149286300(-)$1	232	98	102	11.9999
::::	chr11:106689566-106689778(-)$1	212	200	204	11.9999
FFFF	chr18:1691755-1691965(+)$1	210	68	72	11.9999
EEEK	chrX:16185913-16186162(-)$1	249	66	70	11.9999
eeee	chr15:89878243-89878480(+)$1	237	99	103	11.9999
ICCC	chr10:43492990-43493201(+)$1	211	11	15	11.9999
FFFF	chr17:8125488-8125719(-)$1	231	9	13	11.9999
ddd$	chr7:149292176-149292421(-)$1	245	78	82	11.9999
c666	chr1:45187452-45187665(-)$1	213	89	93	11.9999
:::H	chr10:18934731-18934984(-)$1	253	27	31	11.9999
::::	chr17:26919409-26919658(-)$1	249	163	167	11.9999
3hhh	chr10:128256276-128256488(-)$1	212	106	110	11.9999
eeee	chr3:45730378-45730589(-)$1	211	65	69	11.9999
gggg	chr17:33430286-33430572(-)$1	286	90	94	11.9999
dddd	chr11:72414339-72414544(-)$1	205	106	110	11.9999
c333	chr19:14280678-14280944(-)$1	266	38	42	11.9999
eee:	chr19:45981798-45982021(-)$1	223	134	138	11.9999
ffff	chr11:109641715-109641919(-)$1	204	163	167	11.9999
"bb!	chr2:27274018-27274235(+)$1	217	161	165	11.9999
mmme	chr20:36026940-36027238(+)$1	298	19	23	11.9999
77cc	chr20:62597553-62597756(-)$1	203	173	177	11.9999
iiii	chr10:81074843-81075127(+)$1	284	96	100	11.9999
eeee	chr4:39460410-39460632(-)$1	222	89	93	11.9999
nnff	chr19:30804045-30804269(+)$1	224	53	57	11.9999
eee#	chr10:64573513-64573723(-)$1	210	28	32	11.9999
b22c	chr15:74222564-74222772(+)$1	208	188	192	11.9999
mmdd	chr15:45492508-45492745(-)$1	237	14	18	11.9999
oooo	chr1:16993335-16993541(-)$1	206	81	85	11.9999
mmbb	chr9:138901415-138901662(-)$1	247	205	209	11.9999
cccs	chr11:9481795-9482048(-)$1	253	25	29	11.9999
ee::	chr11:75115118-75115352(+)$1	234	27	31	11.9999
EEEK	chr11:62293169-62293424(-)$1	255	12	16	11.9999
c555	chr1:45187465-45187674(-)$1	209	98	102	11.9999
""bb	chr1:151175393-151175644(+)$1	251	40	44	11.9999
iiii	chr6:34555094-34555366(-)$1	272	61	65	11.9999
66dd	chrX:71284303-71284524(+)$1	221	121	125	11.9999
a22b	chr12:1948154-1948380(-)$1	226	46	50	11.9999
h(((	chr13:92000503-92000748(+)$1	245	153	157	11.9999
::::	chrX:16185864-16186100(-)$1	236	4	8	11.9999
fqqq	chr11:618785-618994(-)$1	209	6	10	11.9999
CCC:	chrM:12180-12398(+)$1	218	1	5	11.9999
ddd:	chr19:45981771-45981975(-)$1	204	88	92	11.9999
hhAK	chr7:139025376-139025600(+)$1	224	64	68	11.9999
cccH	chr10:18934784-18935039(-)$1	255	82	86	11.9999
eee'	chr16:18800293-18800542(-)$1	249	9	13	11.9999
emmm	chr3:45730391-45730627(-)$1	236	103	107	11.9999
CCCY	chr11:72414344-72414560(-)$1	216	122	126	11.9999
gggg	chrM:12107-12350(+)$1	243	55	59	11.9999
CMMM	chr1:227087874-227088080(+)$1	206	69	73	11.9999
""gg	chr1:45242081-45242307(+)$1	226	7	11	11.9999
2eee	chr15:66069976-66070236(-)$1	260	55	59	11.9999
!fff	chr4:39459954-39460161(-)$1	207	98	102	11.9999
dddo	chr10:64573524-64573735(-)$1	211	8	12	11.9999
#ddd	chr22:17091062-17091320(+)$1	258	177	181	11.9999
CCC:	chrM:12176-12380(+)$1	204	5	9	11.9999
7777	chr12:48153597-48153819(+)$1	222	50	54	11.9999
EEEK	chrX:16185900-16186113(-)$1	213	17	21	11.9999
eee:	chr19:45981757-45981971(-)$1	214	84	88	11.9999
CCC{	chr19:1990564-1990788(-)$1	224	31	35	11.9999
EEEE	chr13:41634780-41635001(-)$1	221	6	10	11.9999
eeee	chr15:89878240-89878443(+)$1	203	102	106	11.9999
cc22	chr22:20110946-20111199(+)$1	253	112	116	11.9999
!!dd	chr9:19380096-19380331(-)$1	235	197	201	11.9999
44hh	chr20:37393626-37393910(+)$1	284	156	160	11.9999

#DB
(...	chr11:618794-619008(-)$1	1	20	24	11.9999
((((	chr1:94313076-94313318(+)$1	1	27	31	11.9999
....	chr1:169076104-169076327(+)$1	1	18	22	11.9999
((((	chr14:50695235-50695439(-)$1	1	2	6	11.9999
((((	chr14:50695239-50695456(-)$1	1	19	23	11.9999
)..)	chr7:149286059-149286268(-)$1	1	66	70	11.9999
((((	chrM:12060-12299(+)$1	1	102	106	11.9999
))).	chr19:45981754-45981957(-)$1	1	70	74	11.9999
.)))	chr10:128256268-128256476(-)$1	1	94	98	11.9999
..))	chr20:62597556-62597772(-)$1	1	189	193	11.9999
))((	chr17:26919458-26919700(-)$1	1	205	209	11.9999
(...	chr2:97535492-97535811(-)$1	1	78	82	11.9999
.(((	chr10:43492980-43493190(+)$1	1	21	25	11.9999
))).	chr19:45981775-45981998(-)$1	1	111	115	11.9999
((((	chr6:31958179-31958383(+)$1	1	68	72	11.9999
....	chr7:149286068-149286300(-)$1	1	98	102	11.9999
....	chr11:106689566-106689778(-)$1	1	200	204	11.9999
))))	chr18:1691755-1691965(+)$1	1	68	72	11.9999
(((.	chrX:16185913-16186162(-)$1	1	66	70	11.9999
))))	chr15:89878243-89878480(+)$1	1	99	103	11.9999
((((	chr10:43492990-43493201(+)$1	1	11	15	11.9999
((((	chr17:8125488-8125719(-)$1	1	9	13	11.9999
(((.	chr7:149292176-149292421(-)$1	1	78	82	11.9999
)...	chr1:45187452-45187665(-)$1	1	89	93	11.9999
...(	chr10:18934731-18934984(-)$1	1	27	31	11.9999
....	chr17:26919409-26919658(-)$1	1	163	167	11.9999
.)))	chr10:128256276-128256488(-)$1	1	106	110	11.9999
))))	chr3:45730378-45730589(-)$1	1	65	69	11.9999
((((	chr17:33430286-33430572(-)$1	1	90	94	11.9999
((((	chr11:72414339-72414544(-)$1	1	106	110	11.9999
)...	chr19:14280678-14280944(-)$1	1	38	42	11.9999
))).	chr19:45981798-45982021(-)$1	1	134	138	11.9999
))))	chr11:109641715-109641919(-)$1	1	163	167	11.9999
.((.	chr2:27274018-27274235(+)$1	1	161	165	11.9999
...)	chr20:36026940-36027238(+)$1	1	19	23	11.9999
..))	chr20:62597553-62597756(-)$1	1	173	177	11.9999
))))	chr10:81074843-81075127(+)$1	1	96	100	11.9999
((((	chr4:39460410-39460632(-)$1	1	89	93	11.9999
..))	chr19:30804045-30804269(+)$1	1	53	57	11.9999
(((.	chr10:64573513-64573723(-)$1	1	28	32	11.9999
)..)	chr15:74222564-74222772(+)$1	1	188	192	11.9999
..))	chr15:45492508-45492745(-)$1	1	14	18	11.9999
....	chr1:16993335-16993541(-)$1	1	81	85	11.9999
..))	chr9:138901415-138901662(-)$1	1	205	209	11.9999
(((.	chr11:9481795-9482048(-)$1	1	25	29	11.9999
))..	chr11:75115118-75115352(+)$1	1	27	31	11.9999
(((.	chr11:62293169-62293424(-)$1	1	12	16	11.9999
)...	chr1:45187465-45187674(-)$1	1	98	102	11.9999
..((	chr1:151175393-151175644(+)$1	1	40	44	11.9999
))))	chr6:34555094-34555366(-)$1	1	61	65	11.9999
..))	chrX:71284303-71284524(+)$1	1	121	125	11.9999
)..)	chr12:1948154-1948380(-)$1	1	46	50	11.9999
(...	chr13:92000503-92000748(+)$1	1	153	157	11.9999
....	chrX:16185864-16186100(-)$1	1	4	8	11.9999
(...	chr11:618785-618994(-)$1	1	6	10	11.9999
(((.	chrM:12180-12398(+)$1	1	1	5	11.9999
))).	chr19:45981771-45981975(-)$1	1	88	92	11.9999
))(.	chr7:139025376-139025600(+)$1	1	64	68	11.9999
)))(	chr10:18934784-18935039(-)$1	1	82	86	11.9999
(((.	chr16:18800293-18800542(-)$1	1	9	13	11.9999
(...	chr3:45730391-45730627(-)$1	1	103	107	11.9999
))).	chr11:72414344-72414560(-)$1	1	122	126	11.9999
((((	chrM:12107-12350(+)$1	1	55	59	11.9999
(...	chr1:227087874-227088080(+)$1	1	69	73	11.9999
..((	chr1:45242081-45242307(+)$1	1	7	11	11.9999
.)))	chr15:66069976-66070236(-)$1	1	55	59	11.9999
.(((	chr4:39459954-39460161(-)$1	1	98	102	11.9999
(((.	chr10:64573524-64573735(-)$1	1	8	12	11.9999
.(((	chr22:17091062-17091320(+)$1	1	177	181	11.9999
(((.	chrM:12176-12380(+)$1	1	5	9	11.9999
....	chr12:48153597-48153819(+)$1	1	50	54	11.9999
(((.	chrX:16185900-16186113(-)$1	1	17	21	11.9999
))).	chr19:45981757-45981971(-)$1	1	84	88	11.9999
(((.	chr19:1990564-1990788(-)$1	1	31	35	11.9999
((((	chr13:41634780-41635001(-)$1	1	6	10	11.9999
))))	chr15:89878240-89878443(+)$1	1	102	106	11.9999
))..	chr22:20110946-20111199(+)$1	1	112	116	11.9999
..((	chr9:19380096-19380331(-)$1	1	197	201	11.9999
..))	chr20:37393626-37393910(+)$1	1	156	160	11.9999

#PSSM
C : 0.73	c : 0.26	
A : 0.73	a : 0.26	
G : 0.73	g : 0.26	
A : 0.73	a : 0.26	

#score	947.9999999999999
#seq	79
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_transcript_m3_run2.nuc.txt

#NT
AAUAAUU	chr3:119178895-119179178(-)$1	283	193	200	16.6666
AAUACUU	chr1:227494267-227494557(-)$1	290	29	36	12.2666
AAUAAUA	chr13:46092214-46092519(+)$1	305	110	117	12.6666
AAUAAUC	chr1:114520116-114520417(+)$1	301	101	108	12.4666
UAUAAUU	chr2:37321514-37321791(+)$1	277	101	108	12.5999
AAUAAGU	chr15:52337570-52337845(+)$1	275	44	51	12.7333
auuaauu	chr3:47200155-47200471(-)$1	316	152	159	13.1999
AUUAAUU	chr8:106646660-106646999(+)$1	339	131	138	13.1999
aauaaau	chr18:32860566-32860861(-)$1	295	41	48	12.9333
AAUAAUA	chr6:20560664-20560996(+)$1	332	213	220	12.6666
AGUAAUU	chr7:12377482-12377768(-)$1	286	20	27	13.0666
AAUAAUU	chrM:13590-13795(+)$1	205	21	28	16.6666
aauauuu	chr12:25052729-25052985(-)$1	256	243	250	12.3333
ACUAAUU	chr9:96312953-96313263(+)$1	310	118	125	13.5333
aauaaau	chr15:49474189-49474470(+)$1	281	42	49	12.9333
acuaauu	chr17:2505746-2506031(+)$1	285	139	146	13.5333
AAUAAUU	chr3:138288078-138288430(-)$1	352	69	76	16.6666
aauaaau	chr2:9683781-9684027(-)$1	246	15	22	12.9333
AACAAUU	chr7:103290661-103290921(-)$1	260	103	110	12.4666
ACUAAUU	chr5:43616874-43617190(+)$1	316	88	95	13.5333
AAUAAGU	chr2:75913084-75913339(-)$1	255	126	133	12.7333
uauaauu	chr15:41579067-41579353(+)$1	286	8	15	12.5999
UAUAAUU	chr6:159002770-159003077(+)$1	307	296	303	12.5999
AAUAAUA	chr1:113175638-113175906(+)$1	268	27	34	12.6666
AAGAAUU	chr2:111417920-111418209(-)$1	289	52	59	12.5333
aauaaau	chr5:104327979-104328299(-)$1	320	32	39	12.9333
aaaaauu	chr2:61722371-61722657(-)$1	286	268	275	12.6666
AAUAGUU	chr10:75984340-75984628(+)$1	288	35	42	12.2666
AAUAAUU	chr7:104665894-104666193(+)$1	299	103	110	16.6666
AGUAAUU	chr11:85777067-85777406(-)$1	339	273	280	13.0666
AAUAAUU	chr21:23632503-23632803(+)$1	300	29	36	16.6666
UAUAAUU	chr7:152011919-152012204(-)$1	285	26	33	12.5999
AAUACUU	chr3:37314743-37315004(+)$1	261	100	107	12.2666
AAUAAUC	chrM:4602-4857(+)$1	255	155	162	12.4666
acuaauu	chr2:39309930-39310258(-)$1	328	109	116	13.5333
acuaauu	chr1:104088554-104088840(+)$1	286	104	111	13.5333
AUUAAUU	chr2:32212924-32213219(-)$1	295	164	171	13.1999
AUUAAUU	chr1:113638937-113639250(+)$1	313	111	118	13.1999
ACUAAUU	chr14:37574709-37574966(-)$1	257	6	13	13.5333
aauaauu	chr2:15531171-15531512(-)$1	341	212	219	16.6666
aauaagu	chr5:134113506-134113809(+)$1	303	158	165	12.7333
aagaauu	chr9:104166845-104167187(+)$1	342	242	249	12.5333
aagaauu	chr21:38813916-38814172(+)$1	256	160	167	12.5333
ACUAAUU	chr11:475634-475891(+)$1	257	39	46	13.5333
AAAAAUU	chr4:48509387-48509655(-)$1	268	223	230	12.6666
aauaguu	chrX:128676191-128676457(+)$1	266	194	201	12.2666
AAUAAUU	chr3:152028386-152028671(+)$1	285	61	68	16.6666
uauaauu	chr14:45659641-45659901(+)$1	260	105	112	12.5999
AAUAUUU	chr13:99631269-99631557(-)$1	288	269	276	12.3333
AAUAAUA	chr3:197895037-197895310(+)$1	273	14	21	12.6666
AAAAAUU	chr8:100049343-100049634(+)$1	291	93	100	12.6666
CAUAAUU	chr2:54141173-54141499(-)$1	326	0	7	12.3333
AAUAACU	chr13:20294508-20294821(-)$1	313	47	54	12.7999
aaaaauu	chr1:29263402-29263787(+)$1	385	199	206	12.6666
AAUAACU	chr20:30997171-30997456(+)$1	285	0	7	12.7999
CAUAAUU	chr10:49627822-49628071(+)$1	249	131	138	12.3333
AAUAAUU	chr7:12381839-12382107(-)$1	268	59	66	16.6666
AAUAACU	chr4:79753419-79753687(+)$1	268	162	169	12.7999
AAUAAAU	chr14:31102851-31103120(+)$1	269	127	134	12.9333
aauaaau	chr2:176843100-176843402(-)$1	302	186	193	12.9333
AAUAAUA	chr2:149449363-149449618(+)$1	255	203	210	12.6666
UAUAAUU	chr2:26597081-26597353(+)$1	272	25	32	12.5999
acuaauu	chr11:475691-475949(+)$1	258	39	46	13.5333
AAUAAUU	chr7:20210036-20210381(-)$1	345	200	207	16.6666
aguaauu	chr17:35452517-35452849(-)$1	332	144	151	13.0666
acuaauu	chrX:109300296-109300587(+)$1	291	167	174	13.5333
acuaauu	chr7:105014857-105015150(-)$1	293	124	131	13.5333
AAUAAUU	chr8:53617375-53617663(-)$1	288	84	91	16.6666
AAUAUUU	chr20:49128505-49128793(+)$1	288	106	113	12.3333
AAUAAUC	chr2:159486021-159486288(+)$1	267	64	71	12.4666
AAUAAUA	chr20:34328436-34328725(-)$1	289	141	148	12.6666
AACAAUU	chr12:69052603-69052921(+)$1	318	139	146	12.4666
aauaacu	chr4:177242654-177242916(+)$1	262	202	209	12.7999
aaaaauu	chr6:143498141-143498470(+)$1	329	168	175	12.6666

#otherMatches

#Struct PSSM
::fffff	chr7:91621453-91621721(+)$1	268	182	189	13.1999
ffffff[	chr3:119178895-119179178(-)$1	283	193	200	16.6666
dddmmmm	chr1:227494267-227494557(-)$1	290	29	36	12.2666
YJJJJJJ	chr13:46092214-46092519(+)$1	305	110	117	12.6666
eeemmmm	chr1:114520116-114520417(+)$1	301	101	108	12.4666
:::::::	chr2:37321514-37321791(+)$1	277	101	108	12.5999
ee[eeee	chr15:52337570-52337845(+)$1	275	44	51	12.7333
c4444dd	chr3:47200155-47200471(-)$1	316	152	159	13.1999
fffffnn	chr8:106646660-106646999(+)$1	339	131	138	13.1999
E::::::	chr18:32860566-32860861(-)$1	295	41	48	12.9333
:::::::	chr6:20560664-20560996(+)$1	332	213	220	12.6666
:::::::	chr7:12377482-12377768(-)$1	286	20	27	13.0666
ffff"""	chrM:13590-13795(+)$1	205	21	28	16.6666
GZZZGGG	chr12:25052729-25052985(-)$1	256	243	250	12.3333
>>>>>>>	chr9:96312953-96313263(+)$1	310	118	125	13.5333
eennnnn	chr15:49474189-49474470(+)$1	281	42	49	12.9333
bb^^^^^	chr17:2505746-2506031(+)$1	285	139	146	13.5333
dd:eeee	chr3:138288078-138288430(-)$1	352	69	76	16.6666
c!!gggg	chr2:9683781-9684027(-)$1	246	15	22	12.9333
tttttdd	chr7:103290661-103290921(-)$1	260	103	110	12.4666
:eeeeel	chr5:43616874-43617190(+)$1	316	88	95	13.5333
ffqqqqq	chr2:75913084-75913339(-)$1	255	126	133	12.7333
JJJJ:::	chr15:41579067-41579353(+)$1	286	8	15	12.5999
:::::::	chr6:159002770-159003077(+)$1	307	296	303	12.5999
fffffqq	chr1:113175638-113175906(+)$1	268	27	34	12.6666
dddd:::	chr2:111417920-111418209(-)$1	289	52	59	12.5333
GGGGG:C	chr5:104327979-104328299(-)$1	320	32	39	12.9333
77777hh	chr2:61722371-61722657(-)$1	286	268	275	12.6666
]gggggg	chr10:75984340-75984628(+)$1	288	35	42	12.2666
^^^^^^^	chr7:104665894-104666193(+)$1	299	103	110	16.6666
ddd::::	chr11:85777067-85777406(-)$1	339	273	280	13.0666
lllgggg	chr21:23632503-23632803(+)$1	300	29	36	16.6666
sshhhhh	chr7:152011919-152012204(-)$1	285	26	33	12.5999
E::::::	chr3:37314743-37315004(+)$1	261	100	107	12.2666
:::::::	chrM:4602-4857(+)$1	255	155	162	12.4666
E::::::	chr2:39309930-39310258(-)$1	328	109	116	13.5333
ffccc!!	chr1:104088554-104088840(+)$1	286	104	111	13.5333
::EEEEE	chr2:32212924-32213219(-)$1	295	164	171	13.1999
:::::::	chr1:113638937-113639250(+)$1	313	111	118	13.1999
:::::::	chr14:37574709-37574966(-)$1	257	6	13	13.5333
dd[bbmm	chr2:15531171-15531512(-)$1	341	212	219	16.6666
\\\\CCC	chr5:134113506-134113809(+)$1	303	158	165	12.7333
4eeeee:	chr9:104166845-104167187(+)$1	342	242	249	12.5333
hhhhhho	chr21:38813916-38814172(+)$1	256	160	167	12.5333
+++++++	chr11:475634-475891(+)$1	257	39	46	13.5333
ffflllf	chr4:48509387-48509655(-)$1	268	223	230	12.6666
mgggggg	chrX:128676191-128676457(+)$1	266	194	201	12.2666
eee4444	chr3:152028386-152028671(+)$1	285	61	68	16.6666
]dddd33	chr14:45659641-45659901(+)$1	260	105	112	12.5999
GGGG:::	chr13:99631269-99631557(-)$1	288	269	276	12.3333
:::::::	chr3:197895037-197895310(+)$1	273	14	21	12.6666
xxxxeee	chr8:100049343-100049634(+)$1	291	93	100	12.6666
::::::d	chr2:54141173-54141499(-)$1	326	0	7	12.3333
hhhh[a#	chr13:20294508-20294821(-)$1	313	47	54	12.7999
>>>>>>>	chr1:29263402-29263787(+)$1	385	199	206	12.6666
::::fff	chr20:30997171-30997456(+)$1	285	0	7	12.7999
ttttttt	chr10:49627822-49628071(+)$1	249	131	138	12.3333
:::::::	chr7:12381839-12382107(-)$1	268	59	66	16.6666
:::::::	chr4:79753419-79753687(+)$1	268	162	169	12.7999
c::::::	chr14:31102851-31103120(+)$1	269	127	134	12.9333
^^^^^^^	chr2:176843100-176843402(-)$1	302	186	193	12.9333
""eeeee	chr2:149449363-149449618(+)$1	255	203	210	12.6666
g$$$$$d	chr2:26597081-26597353(+)$1	272	25	32	12.5999
5dddd44	chr11:475691-475949(+)$1	258	39	46	13.5333
ffff[gg	chr7:20210036-20210381(-)$1	345	200	207	16.6666
ffffhhh	chr17:35452517-35452849(-)$1	332	144	151	13.0666
J:::::f	chrX:109300296-109300587(+)$1	291	167	174	13.5333
:::eeee	chr7:105014857-105015150(-)$1	293	124	131	13.5333
##hhhhh	chr8:53617375-53617663(-)$1	288	84	91	16.6666
=====55	chr20:49128505-49128793(+)$1	288	106	113	12.3333
####ccc	chr2:159486021-159486288(+)$1	267	64	71	12.4666
g:::EEE	chr20:34328436-34328725(-)$1	289	141	148	12.6666
D{FFFFF	chr12:69052603-69052921(+)$1	318	139	146	12.4666
:::::::	chr4:177242654-177242916(+)$1	262	202	209	12.7999
ggggg99	chr6:143498141-143498470(+)$1	329	168	175	12.6666

#DB
..(((((	chr7:91621453-91621721(+)$1	1	182	189	13.1999
((((((.	chr3:119178895-119179178(-)$1	1	193	200	16.6666
(((....	chr1:227494267-227494557(-)$1	1	29	36	12.2666
.))))))	chr13:46092214-46092519(+)$1	1	110	117	12.6666
(((....	chr1:114520116-114520417(+)$1	1	101	108	12.4666
.......	chr2:37321514-37321791(+)$1	1	101	108	12.5999
((.((((	chr15:52337570-52337845(+)$1	1	44	51	12.7333
)....))	chr3:47200155-47200471(-)$1	1	152	159	13.1999
(((((..	chr8:106646660-106646999(+)$1	1	131	138	13.1999
(......	chr18:32860566-32860861(-)$1	1	41	48	12.9333
.......	chr6:20560664-20560996(+)$1	1	213	220	12.6666
.......	chr7:12377482-12377768(-)$1	1	20	27	13.0666
((((...	chrM:13590-13795(+)$1	1	21	28	16.6666
)...)))	chr12:25052729-25052985(-)$1	1	243	250	12.3333
.......	chr9:96312953-96313263(+)$1	1	118	125	13.5333
((.....	chr15:49474189-49474470(+)$1	1	42	49	12.9333
((.....	chr17:2505746-2506031(+)$1	1	139	146	13.5333
)).((((	chr3:138288078-138288430(-)$1	1	69	76	16.6666
(..((((	chr2:9683781-9684027(-)$1	1	15	22	12.9333
.....))	chr7:103290661-103290921(-)$1	1	103	110	12.4666
.(((((.	chr5:43616874-43617190(+)$1	1	88	95	13.5333
((.....	chr2:75913084-75913339(-)$1	1	126	133	12.7333
((((...	chr15:41579067-41579353(+)$1	1	8	15	12.5999
.......	chr6:159002770-159003077(+)$1	1	296	303	12.5999
(((((..	chr1:113175638-113175906(+)$1	1	27	34	12.6666
))))...	chr2:111417920-111418209(-)$1	1	52	59	12.5333
(((((.(	chr5:104327979-104328299(-)$1	1	32	39	12.9333
.....))	chr2:61722371-61722657(-)$1	1	268	275	12.6666
.))))))	chr10:75984340-75984628(+)$1	1	35	42	12.2666
.......	chr7:104665894-104666193(+)$1	1	103	110	16.6666
)))....	chr11:85777067-85777406(-)$1	1	273	280	13.0666
...))))	chr21:23632503-23632803(+)$1	1	29	36	16.6666
..)))))	chr7:152011919-152012204(-)$1	1	26	33	12.5999
(......	chr3:37314743-37315004(+)$1	1	100	107	12.2666
.......	chrM:4602-4857(+)$1	1	155	162	12.4666
(......	chr2:39309930-39310258(-)$1	1	109	116	13.5333
(((((..	chr1:104088554-104088840(+)$1	1	104	111	13.5333
..(((((	chr2:32212924-32213219(-)$1	1	164	171	13.1999
.......	chr1:113638937-113639250(+)$1	1	111	118	13.1999
.......	chr14:37574709-37574966(-)$1	1	6	13	13.5333
((.((..	chr2:15531171-15531512(-)$1	1	212	219	16.6666
....)))	chr5:134113506-134113809(+)$1	1	158	165	12.7333
.))))).	chr9:104166845-104167187(+)$1	1	242	249	12.5333
((((((.	chr21:38813916-38814172(+)$1	1	160	167	12.5333
.......	chr11:475634-475891(+)$1	1	39	46	13.5333
(((...)	chr4:48509387-48509655(-)$1	1	223	230	12.6666
.))))))	chrX:128676191-128676457(+)$1	1	194	201	12.2666
)))....	chr3:152028386-152028671(+)$1	1	61	68	16.6666
.))))..	chr14:45659641-45659901(+)$1	1	105	112	12.5999
))))...	chr13:99631269-99631557(-)$1	1	269	276	12.3333
.......	chr3:197895037-197895310(+)$1	1	14	21	12.6666
....)))	chr8:100049343-100049634(+)$1	1	93	100	12.6666
......(	chr2:54141173-54141499(-)$1	1	0	7	12.3333
((((.(.	chr13:20294508-20294821(-)$1	1	47	54	12.7999
.......	chr1:29263402-29263787(+)$1	1	199	206	12.6666
....(((	chr20:30997171-30997456(+)$1	1	0	7	12.7999
.......	chr10:49627822-49628071(+)$1	1	131	138	12.3333
.......	chr7:12381839-12382107(-)$1	1	59	66	16.6666
.......	chr4:79753419-79753687(+)$1	1	162	169	12.7999
)......	chr14:31102851-31103120(+)$1	1	127	134	12.9333
.......	chr2:176843100-176843402(-)$1	1	186	193	12.9333
..(((((	chr2:149449363-149449618(+)$1	1	203	210	12.6666
(.....(	chr2:26597081-26597353(+)$1	1	25	32	12.5999
.))))..	chr11:475691-475949(+)$1	1	39	46	13.5333
((((.((	chr7:20210036-20210381(-)$1	1	200	207	16.6666
))))(((	chr17:35452517-35452849(-)$1	1	144	151	13.0666
(.....(	chrX:109300296-109300587(+)$1	1	167	174	13.5333
...((((	chr7:105014857-105015150(-)$1	1	124	131	13.5333
..(((((	chr8:53617375-53617663(-)$1	1	84	91	16.6666
)))))..	chr20:49128505-49128793(+)$1	1	106	113	12.3333
....(((	chr2:159486021-159486288(+)$1	1	64	71	12.4666
)...)))	chr20:34328436-34328725(-)$1	1	141	148	12.6666
(.(((((	chr12:69052603-69052921(+)$1	1	139	146	12.4666
.......	chr4:177242654-177242916(+)$1	1	202	209	12.7999
)))))..	chr6:143498141-143498470(+)$1	1	168	175	12.6666

#PSSM
A : 0.58	a : 0.30	U : 0.05	u : 0.02	C : 0.02	
A : 0.53	a : 0.22	c : 0.08	U : 0.05	C : 0.05	G : 0.02	u : 0.01	g : 0.01	
U : 0.59	u : 0.26	a : 0.04	C : 0.02	g : 0.02	A : 0.02	G : 0.01	
A : 0.66	a : 0.33	
A : 0.59	a : 0.30	C : 0.02	U : 0.02	u : 0.01	G : 0.01	g : 0.01	
U : 0.58	u : 0.24	a : 0.06	C : 0.04	G : 0.02	g : 0.01	A : 0.01	c : 0.01	
U : 0.54	u : 0.33	A : 0.08	C : 0.04	

#score	999.7999999999986
#seq	75
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF322GPD_SF3B1_transcript_m2_run2.nuc.txt

#NT
AGAAUUCAUUACCUAGGAAAUAAACUAAAAACGUCCUUAUGCCUUAAACUUAUGAGUAAGGAAAAUAACGAUUCGGGGUGACGCCCGAAUCCUCACUGCUAAUGUGAGACGAAUUUUUGAGCGGGUAAAGGUCGCCCUCAAGGUGACCCGCCUACUUUGCGGGAUGC	chr22:43011211-43011418(+)$1	207	0	167	501.0000
AGAAUUCAUUACCUAGGAAAUAAACUAAAAACGUCCUUAUGCCUUAAACUUAUGAGUAAGGAAAAUAACGAUUCGGGGUGACGCCCGAAUCCUCACUGCUAAUGUGAGACGAAUUUUUGAGCGGGUAAAGGUCGCCCUCAAGGUGACCCGCCUACUUUGCGGGAUGC	chr22:43011171-43011394(+)$1	223	40	207	501.0000

#otherMatches

#Struct PSSM
GGGGGGG::::::cccqqqqqqqqccc::::::ffffff"""ddddooooooddddffffff:::::::hhhhhhhhoooooohhhhhhhheeeeepppppppeeeee::GGGGGGGddddeeeee!!ggggggg[ccc[dddd!!eeeeepppppppeeeee22dd	chr22:43011194-43011406(+)$1	212	17	184	501.0000
:::::::::::::DDDD::::::::::::::::ffffff"""ddddooooooddddffffff:::::::hhhhhhhhoooooohhhhhhhheeeeepppppppeeeee::dddd####a!!eeeee!!ggggggg[ccc[dddd!!eeeeepppppppeeeee22dd	chr22:43011211-43011418(+)$1	207	0	167	501.0000
ppppggggggg::cccqqqqqqqqccc::::::ffffff"""ddddooooooddddffffff:::::::hhhhhhhhoooooohhhhhhhheeeeepppppppeeeee::::::::::ccc[dddd"""gggggggnnnnnggggggg]dddd]ccc:CCC}DDDD}	chr22:43011171-43011394(+)$1	223	40	207	501.0000

#DB
(((((((......(((........)))......((((((...((((......)))))))))).......((((((((......))))))))(((((.......)))))..)))))))(((((((((..(((((((.(((.((((..(((((.......)))))..))	chr22:43011194-43011406(+)$1	1	17	184	501.0000
.............((((................((((((...((((......)))))))))).......((((((((......))))))))(((((.......)))))..((((....(..(((((..(((((((.(((.((((..(((((.......)))))..))	chr22:43011211-43011418(+)$1	1	0	167	501.0000
....)))))))..(((........)))......((((((...((((......)))))))))).......((((((((......))))))))(((((.......)))))..........(((.((((...(((((((.....))))))).)))).))).))).)))).	chr22:43011171-43011394(+)$1	1	40	207	501.0000

#PSSM
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	

#score	1503.0
#seq	3
#width	167
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_transcript_m3_run1.nuc.txt

#NT
UAAGAAGAA	chr17:76219443-76219762(+)$1	319	119	128	16.8181
GAAGAUGAG	chr19:10792362-10792635(+)$1	273	118	127	16.9999
GAAGAAGAA	chr9:100774624-100774854(+)$1	230	78	87	21.1818
GAUgaagaa	chr9:131456110-131456388(+)$1	278	79	88	17.4545
GAAGAAGAA	chr17:57767890-57768173(+)$1	283	142	151	21.1818
gaagaagag	chr2:232576505-232576751(+)$1	246	136	145	21.3636
GGAGAAGAG	chr19:14199895-14200272(-)$1	377	104	113	16.8181
AAAGAAGAA	chr2:170668204-170668463(+)$1	259	5	14	17.0909
gaagaagcg	chr11:35684817-35685212(+)$1	395	76	85	16.6363
gaggaagag	chr6:44217972-44218197(+)$1	225	97	106	18.0909
gaagacgag	chr15:69075220-69075494(-)$1	274	134	143	16.9999
gaggaagag	chr9:100777601-100777856(+)$1	255	72	81	18.0909
aaagaagaa	chr9:116170935-116171288(-)$1	353	68	77	17.0909
GAAGUAGAG	chr17:48823800-48824131(+)$1	331	101	110	16.8181
gaagaugag	chr2:29169374-29169690(+)$1	316	103	112	16.9999
gaagcagag	chr4:142154863-142155163(+)$1	300	142	151	16.8181
gaagaagaa	chr4:174253152-174253375(-)$1	223	60	69	21.1818
GAAGAAGAA	chr10:103558854-103559206(-)$1	352	158	167	21.1818
GUAGAAGAG	chr1:35653549-35653800(-)$1	251	126	135	16.7272
gaagaagaa	chr4:174253175-174253484(-)$1	309	169	178	21.1818
gaggaagag	chr2:86258547-86258847(-)$1	300	104	113	18.0909
GAAGACGAG	chr6:27094010-27094228(-)$1	218	75	84	16.9999
GAAGGAGAG	chr10:103577576-103577934(-)$1	358	163	172	16.9090
gaagaaaag	chr1:16891201-16891515(-)$1	314	124	133	16.9999
GAUGAAGAA	chr15:69072648-69072912(-)$1	264	103	112	17.4545
gaagaagaa	chr1:36216769-36217091(-)$1	322	220	229	21.1818
GAGGAAGAG	chr9:37126536-37126853(+)$1	317	276	285	18.0909
GAAGAAAAG	chr11:68660255-68660506(-)$1	251	138	147	16.9999
GAAGAGGAG	chr12:132198558-132198893(+)$1	335	139	148	16.9090
GAAGAAGUG	chr5:134113160-134113466(+)$1	306	186	195	16.6363
GAAGAAGAG	chr5:32395160-32395492(-)$1	332	196	205	21.3636
GAAGAAGAA	chr9:100774602-100774807(+)$1	205	100	109	21.1818
gaagaagaa	chr12:6878990-6879265(+)$1	275	120	129	21.1818
GAAGAAGAG	chr11:93469280-93469553(-)$1	273	137	146	21.3636
gaagaaaag	chr20:62362866-62363215(+)$1	349	302	311	16.9999
gaggaagag	chr9:100777550-100777776(+)$1	226	123	132	18.0909
GGAGAAGAG	chr1:150192894-150193164(-)$1	270	120	129	16.8181
GAAGAAGAA	chr1:31836813-31837132(+)$1	319	67	76	21.1818
GAGGAAGAU	chr21:44514633-44514940(-)$1	307	51	60	15.6363
GAAGAACAG	chr11:110108154-110108476(-)$1	322	104	113	16.8181
gaggaagaa	chr4:67994-68309(+)$1	315	237	246	17.9090
GAUgaagaa	chr9:131456188-131456393(+)$1	205	1	10	17.4545
gaagaagaa	chr4:174253025-174253320(-)$1	295	5	14	21.1818
gaagaagaa	chr4:174253120-174253330(-)$1	210	15	24	21.1818
AAAGAAGAA	chr15:25615919-25616291(-)$1	372	208	217	17.0909
gaagaagag	chr2:232576578-232576793(+)$1	215	63	72	21.3636
gaagaagaa	chr4:174253130-174253339(-)$1	209	24	33	21.1818
gaggaagag	chr9:100777545-100777748(+)$1	203	128	137	18.0909
GAAGAAGAA	chr16:2808893-2809149(+)$1	256	140	149	21.1818
AAAGAAGAA	chr16:58633209-58633518(-)$1	309	137	146	17.0909
gaaggagaa	chr9:131456193-131456418(+)$1	225	2	11	16.7272
gaagaagag	chr1:70715954-70716276(+)$1	322	168	177	21.3636
GAAGAAGAA	chr19:2328317-2328564(-)$1	247	96	105	21.1818
GAAGAAGAA	chr2:29169490-29169768(+)$1	278	143	152	21.1818

#otherMatches

#Struct PSSM
cc[bbdddd	chr6:24780825-24781076(+)$1	251	78	87	16.8181
000eeeee:	chr17:76219443-76219762(+)$1	319	119	128	16.8181
fff]a]fff	chr19:10792362-10792635(+)$1	273	118	127	16.9999
!cccttttt	chr9:100774624-100774854(+)$1	230	78	87	21.1818
33=======	chr9:131456110-131456388(+)$1	278	79	88	17.4545
::IIIIIII	chr17:57767890-57768173(+)$1	283	142	151	21.1818
[ccc"""ii	chr2:232576505-232576751(+)$1	246	136	145	21.3636
eeeee]eee	chr19:14199895-14200272(-)$1	377	104	113	16.8181
EEEKKEEEE	chr2:170668204-170668463(+)$1	259	5	14	17.0909
:::::::::	chr11:35684817-35685212(+)$1	395	76	85	16.6363
fff]a6666	chr6:44217972-44218197(+)$1	225	97	106	18.0909
]bb22eeee	chr15:69075220-69075494(-)$1	274	134	143	16.9999
:::::::::	chr9:100777601-100777856(+)$1	255	72	81	18.0909
:::::::FF	chr9:116170935-116171288(-)$1	353	68	77	17.0909
mmeeeee55	chr17:48823800-48824131(+)$1	331	101	110	16.8181
eeee]ccc]	chr2:29169374-29169690(+)$1	316	103	112	16.9999
:ggggggg"	chr4:142154863-142155163(+)$1	300	142	151	16.8181
::::::::D	chr4:174253152-174253375(-)$1	223	60	69	21.1818
d::::::::	chr10:103558854-103559206(-)$1	352	158	167	21.1818
:::::::::	chr1:35653549-35653800(-)$1	251	126	135	16.7272
:::::::::	chr4:174253175-174253484(-)$1	309	169	178	21.1818
22bb]hhhh	chr2:86258547-86258847(-)$1	300	104	113	18.0909
fffff[ccc	chr6:27094010-27094228(-)$1	218	75	84	16.9999
mmma]a22c	chr10:103577576-103577934(-)$1	358	163	172	16.9090
]a:::::::	chr1:16891201-16891515(-)$1	314	124	133	16.9999
cccpppppp	chr15:69072648-69072912(-)$1	264	103	112	17.4545
::::::a!!	chr1:36216769-36217091(-)$1	322	220	229	21.1818
ggghhhhhh	chr9:37126536-37126853(+)$1	317	276	285	18.0909
EEEE~~~~D	chr11:68660255-68660506(-)$1	251	138	147	16.9999
YIIIIIIII	chr12:132198558-132198893(+)$1	335	139	148	16.9090
####dddd^	chr5:134113160-134113466(+)$1	306	186	195	16.6363
FFFFFF}BB	chr5:32395160-32395492(-)$1	332	196	205	21.3636
nnngggggg	chr9:100774602-100774807(+)$1	205	100	109	21.1818
:::::::::	chr12:6878990-6879265(+)$1	275	120	129	21.1818
f22ccc22c	chr11:93469280-93469553(-)$1	273	137	146	21.3636
dd:::::::	chr20:62362866-62363215(+)$1	349	302	311	16.9999
::::::BB}	chr9:100777550-100777776(+)$1	226	123	132	18.0909
ffff4444e	chr1:150192894-150193164(-)$1	270	120	129	16.8181
JLLLCCC::	chr1:31836813-31837132(+)$1	319	67	76	21.1818
mmbb22bb]	chr21:44514633-44514940(-)$1	307	51	60	15.6363
EEEEE{CCC	chr11:110108154-110108476(-)$1	322	104	113	16.8181
eeee22bb6	chr4:67994-68309(+)$1	315	237	246	17.9090
:::::::::	chr9:131456188-131456393(+)$1	205	1	10	17.4545
:::::::::	chr4:174253025-174253320(-)$1	295	5	14	21.1818
:::::::::	chr4:174253120-174253330(-)$1	210	15	24	21.1818
+++++++++	chr15:25615919-25616291(-)$1	372	208	217	17.0909
[ccc"""ii	chr2:232576578-232576793(+)$1	215	63	72	21.3636
>>>>>>>>>	chr4:174253130-174253339(-)$1	209	24	33	21.1818
:::::::::	chr9:100777545-100777748(+)$1	203	128	137	18.0909
=========	chr16:2808893-2809149(+)$1	256	140	149	21.1818
44hhhhhhh	chr16:58633209-58633518(-)$1	309	137	146	17.0909
:::::::::	chr9:131456193-131456418(+)$1	225	2	11	16.7272
RRJJJJJJJ	chr1:70715954-70716276(+)$1	322	168	177	21.3636
G::::::::	chr19:2328317-2328564(-)$1	247	96	105	21.1818
bb:::::::	chr2:29169490-29169768(+)$1	278	143	152	21.1818

#DB
((.((((((	chr6:24780825-24781076(+)$1	1	78	87	16.8181
...))))).	chr17:76219443-76219762(+)$1	1	119	128	16.8181
))).).)))	chr19:10792362-10792635(+)$1	1	118	127	16.9999
.(((.....	chr9:100774624-100774854(+)$1	1	78	87	21.1818
..)))))))	chr9:131456110-131456388(+)$1	1	79	88	17.4545
..)))))))	chr17:57767890-57768173(+)$1	1	142	151	21.1818
.(((...((	chr2:232576505-232576751(+)$1	1	136	145	21.3636
))))).)))	chr19:14199895-14200272(-)$1	1	104	113	16.8181
(((..((((	chr2:170668204-170668463(+)$1	1	5	14	17.0909
.........	chr11:35684817-35685212(+)$1	1	76	85	16.6363
))).)....	chr6:44217972-44218197(+)$1	1	97	106	18.0909
.))..))))	chr15:69075220-69075494(-)$1	1	134	143	16.9999
.........	chr9:100777601-100777856(+)$1	1	72	81	18.0909
.......))	chr9:116170935-116171288(-)$1	1	68	77	17.0909
..)))))..	chr17:48823800-48824131(+)$1	1	101	110	16.8181
)))).))).	chr2:29169374-29169690(+)$1	1	103	112	16.9999
.(((((((.	chr4:142154863-142155163(+)$1	1	142	151	16.8181
........)	chr4:174253152-174253375(-)$1	1	60	69	21.1818
)........	chr10:103558854-103559206(-)$1	1	158	167	21.1818
.........	chr1:35653549-35653800(-)$1	1	126	135	16.7272
.........	chr4:174253175-174253484(-)$1	1	169	178	21.1818
..)).))))	chr2:86258547-86258847(-)$1	1	104	113	18.0909
(((((.(((	chr6:27094010-27094228(-)$1	1	75	84	16.9999
...).)..)	chr10:103577576-103577934(-)$1	1	163	172	16.9090
.).......	chr1:16891201-16891515(-)$1	1	124	133	16.9999
(((......	chr15:69072648-69072912(-)$1	1	103	112	17.4545
......(..	chr1:36216769-36217091(-)$1	1	220	229	21.1818
)))))))))	chr9:37126536-37126853(+)$1	1	276	285	18.0909
))))....)	chr11:68660255-68660506(-)$1	1	138	147	16.9999
.))))))))	chr12:132198558-132198893(+)$1	1	139	148	16.9090
....((((.	chr5:134113160-134113466(+)$1	1	186	195	16.6363
)))))).))	chr5:32395160-32395492(-)$1	1	196	205	21.3636
...))))))	chr9:100774602-100774807(+)$1	1	100	109	21.1818
.........	chr12:6878990-6879265(+)$1	1	120	129	21.1818
)..)))..)	chr11:93469280-93469553(-)$1	1	137	146	21.3636
)).......	chr20:62362866-62363215(+)$1	1	302	311	16.9999
......)).	chr9:100777550-100777776(+)$1	1	123	132	18.0909
))))....)	chr1:150192894-150193164(-)$1	1	120	129	16.8181
(...(((..	chr1:31836813-31837132(+)$1	1	67	76	21.1818
..))..)).	chr21:44514633-44514940(-)$1	1	51	60	15.6363
(((((.(((	chr11:110108154-110108476(-)$1	1	104	113	16.8181
))))..)).	chr4:67994-68309(+)$1	1	237	246	17.9090
.........	chr9:131456188-131456393(+)$1	1	1	10	17.4545
.........	chr4:174253025-174253320(-)$1	1	5	14	21.1818
.........	chr4:174253120-174253330(-)$1	1	15	24	21.1818
.........	chr15:25615919-25616291(-)$1	1	208	217	17.0909
.(((...((	chr2:232576578-232576793(+)$1	1	63	72	21.3636
.........	chr4:174253130-174253339(-)$1	1	24	33	21.1818
.........	chr9:100777545-100777748(+)$1	1	128	137	18.0909
(((((((((	chr16:2808893-2809149(+)$1	1	140	149	21.1818
..)))))))	chr16:58633209-58633518(-)$1	1	137	146	17.0909
.........	chr9:131456193-131456418(+)$1	1	2	11	16.7272
..(((((((	chr1:70715954-70716276(+)$1	1	168	177	21.3636
(........	chr19:2328317-2328564(-)$1	1	96	105	21.1818
)).......	chr2:29169490-29169768(+)$1	1	143	152	21.1818

#PSSM
G : 0.47	g : 0.41	A : 0.05	C : 0.01	U : 0.01	a : 0.01	
A : 0.50	a : 0.43	G : 0.03	U : 0.01	
A : 0.47	a : 0.32	g : 0.10	U : 0.05	G : 0.03	
G : 0.52	g : 0.47	
A : 0.49	a : 0.43	U : 0.01	c : 0.01	G : 0.01	g : 0.01	
A : 0.47	a : 0.43	U : 0.01	c : 0.01	u : 0.01	C : 0.01	G : 0.01	
G : 0.49	g : 0.43	a : 0.03	A : 0.01	C : 0.01	
A : 0.50	a : 0.45	c : 0.01	U : 0.01	
A : 0.25	G : 0.25	g : 0.25	a : 0.21	U : 0.01	

#score	1024.6363636363633
#seq	55
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF756RYJ_AARS_UTR_m3_run2.nuc.txt

#NT
GGUUGGACUGCUCAUGG	chr9:100777607-100777855(+)$1	248	145	162	36.0000

#otherMatches

#Struct PSSM
!!ccc!!dddd[ddddd	chr3:128211718-128211966(+)$1	248	51	68	36.0000
dddd333bb]adddd44	chr9:100777607-100777855(+)$1	248	145	162	36.0000

#DB
..(((..((((.(((((	chr3:128211718-128211966(+)$1	1	51	68	36.0000
))))...)).)))))..	chr9:100777607-100777855(+)$1	1	145	162	36.0000

#PSSM
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
c : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	C : 0.50	
c : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 1.00	

#score	72.0
#seq	2
#width	17
#escape	false
#onStep	6869
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_transcript_m2_run2.nuc.txt

#NT
CCA	chr11:2154787-2154990(-)$1	203	91	94	8.9999
CCA	chr21:46574968-46575277(+)$1	309	80	83	8.9999
CCA	chr11:2152335-2152542(-)$1	207	11	14	8.9999
CCA	chr15:99478487-99478714(+)$1	227	15	18	8.9999
CCA	chr7:100781158-100781366(+)$1	208	13	16	8.9999
CCA	chr15:77348359-77348612(-)$1	253	77	80	8.9999
CCA	chr2:10453287-10453579(+)$1	292	23	26	8.9999
CCA	chr11:2154326-2154533(-)$1	207	76	79	8.9999
CCA	chr13:21751200-21751543(+)$1	343	124	127	8.9999
cca	chr3:194831663-194832056(-)$1	393	53	56	8.9999
CCA	chr11:811511-811740(+)$1	229	0	3	8.9999
CCA	chr17:73261681-73261942(+)$1	261	0	3	8.9999
CCA	chr11:2154211-2154414(-)$1	203	23	26	8.9999
CCA	chr22:31740324-31740592(-)$1	268	13	16	8.9999
CCA	chr9:136797883-136798153(-)$1	270	17	20	8.9999
CCA	chr11:61732132-61732339(-)$1	207	22	25	8.9999
CCA	chr12:120638492-120638712(-)$1	220	49	52	8.9999
cca	chr16:81609802-81610077(+)$1	275	17	20	8.9999
CCA	chr2:241465802-241466065(-)$1	263	10	13	8.9999
CCA	chr6:145118940-145119177(+)$1	237	15	18	8.9999
CCA	chr2:38960951-38961227(+)$1	276	23	26	8.9999
cca	chr11:63881477-63881720(-)$1	243	1	4	8.9999
CCA	chr11:2152102-2152307(-)$1	205	3	6	8.9999
CCA	chr11:2152333-2152535(-)$1	202	4	7	8.9999
CCA	chrX:41045672-41045994(+)$1	322	70	73	8.9999
CCA	chr12:120638465-120638679(-)$1	214	16	19	8.9999
CCA	chr11:2152428-2152635(-)$1	207	48	51	8.9999
CCA	chr17:80573282-80573551(-)$1	269	5	8	8.9999
CCA	chr11:2152149-2152358(-)$1	209	21	24	8.9999
CCA	chr11:2160072-2160281(-)$1	209	73	76	8.9999
CCA	chr11:2153963-2154168(-)$1	205	7	10	8.9999
cca	chr9:136799274-136799516(-)$1	242	10	13	8.9999
CCA	chr9:108118391-108118697(+)$1	306	97	100	8.9999
CCA	chr11:2159436-2159640(-)$1	204	20	23	8.9999
CCA	chr11:2159452-2159656(-)$1	204	36	39	8.9999
CCA	chr11:2154083-2154291(-)$1	208	16	19	8.9999
CCA	chr5:180668409-180668636(-)$1	227	2	5	8.9999
CCA	chr11:2156590-2156795(-)$1	205	15	18	8.9999
CCA	chr3:197680854-197681070(+)$1	216	44	47	8.9999
CCA	chr11:2159426-2159630(-)$1	204	10	13	8.9999
CCA	chr11:65194609-65194821(+)$1	212	121	124	8.9999
CCA	chr11:61732161-61732378(-)$1	217	1	4	8.9999
cca	chr2:241467043-241467320(-)$1	277	33	36	8.9999
CCA	chr13:48832256-48832472(+)$1	216	1	4	8.9999
CCA	chr6:33243485-33243695(+)$1	210	143	146	8.9999
CCA	chr11:62285998-62286302(-)$1	304	29	32	8.9999
CCA	chr19:46190670-46190955(-)$1	285	20	23	8.9999
CCA	chrX:53655391-53655615(-)$1	224	29	32	8.9999
CCA	chr12:6645838-6646042(+)$1	204	7	10	8.9999
CCA	chr11:2153448-2153656(-)$1	208	2	5	8.9999
CCA	chr2:10539802-10540162(+)$1	360	119	122	8.9999
CCA	chr12:113826645-113826918(+)$1	273	22	25	8.9999
cca	chr2:241466146-241466482(-)$1	336	17	20	8.9999
CCA	chr12:120638512-120638723(-)$1	211	60	63	8.9999
CCA	chrX:71493681-71493897(-)$1	216	2	5	8.9999
CCA	chr3:52027817-52028032(-)$1	215	20	23	8.9999
cca	chr16:81609956-81610236(+)$1	280	20	23	8.9999
CCA	chr3:52027841-52028069(-)$1	228	0	3	8.9999
CCA	chr6:7565634-7565853(+)$1	219	12	15	8.9999
CCA	chr2:21234042-21234249(-)$1	207	2	5	8.9999
CCA	chr11:2152282-2152484(-)$1	202	77	80	8.9999
CCA	chr11:2153511-2153713(-)$1	202	59	62	8.9999
CCA	chr7:157610047-157610317(-)$1	270	81	84	8.9999
CCA	chr12:1005196-1005454(+)$1	258	63	66	8.9999
CCA	chr9:136800417-136800675(-)$1	258	4	7	8.9999
CCA	chr22:38270320-38270612(+)$1	292	168	171	8.9999
CCA	chr3:197680811-197681024(+)$1	213	15	18	8.9999
CCA	chr17:75466819-75467125(+)$1	306	2	5	8.9999
CCA	chr12:6646934-6647140(+)$1	206	2	5	8.9999
CCA	chr20:4834599-4834891(-)$1	292	18	21	8.9999
CCA	chr5:149825093-149825324(-)$1	231	27	30	8.9999
CCA	chr16:58612502-58612732(-)$1	230	42	45	8.9999
CCA	chr5:149826396-149826605(-)$1	209	75	78	8.9999
CCA	chr11:2151075-2151277(-)$1	202	4	7	8.9999
CCA	chr11:62293934-62294212(-)$1	278	31	34	8.9999
CCA	chr11:2159386-2159590(-)$1	204	28	31	8.9999
cca	chr9:80934705-80934989(+)$1	284	122	125	8.9999
CCA	chr1:93299101-93299317(+)$1	216	66	69	8.9999
cca	chr2:47130986-47131286(-)$1	300	7	10	8.9999
CCA	chr19:10930555-10930862(+)$1	307	90	93	8.9999
CCA	chr11:2156628-2156830(-)$1	202	50	53	8.9999
CCA	chr19:39924063-39924265(-)$1	202	68	71	8.9999
CCA	chr16:81608970-81609221(+)$1	251	131	134	8.9999
CCA	chr9:80934203-80934522(+)$1	319	64	67	8.9999
CCA	chr1:153963573-153963796(+)$1	223	44	47	8.9999
CCA	chr11:2153486-2153691(-)$1	205	37	40	8.9999
CCA	chrX:71494826-71495040(-)$1	214	91	94	8.9999
CCA	chr11:2154120-2154326(-)$1	206	21	24	8.9999
cca	chr17:80218555-80218839(-)$1	284	31	34	8.9999
CCA	chr12:113826775-113827039(+)$1	264	17	20	8.9999
CCA	chr7:158235090-158235327(-)$1	237	93	96	8.9999
CCA	chr11:2159733-2159944(-)$1	211	39	42	8.9999
CCA	chr22:35740308-35740558(+)$1	250	28	31	8.9999
CCA	chr17:80107103-80107548(-)$1	445	44	47	8.9999
cca	chr10:5810185-5810448(-)$1	263	27	30	8.9999
CCA	chr5:149827114-149827320(-)$1	206	14	17	8.9999

#otherMatches

#Struct PSSM
mee	chr11:2160060-2160264(-)$1	204	56	59	8.9999
ooo	chr11:2154787-2154990(-)$1	203	91	94	8.9999
:::	chr21:46574968-46575277(+)$1	309	80	83	8.9999
:::	chr11:2152335-2152542(-)$1	207	11	14	8.9999
b[e	chr15:99478487-99478714(+)$1	227	15	18	8.9999
CCC	chr7:100781158-100781366(+)$1	208	13	16	8.9999
[dd	chr15:77348359-77348612(-)$1	253	77	80	8.9999
ccc	chr2:10453287-10453579(+)$1	292	23	26	8.9999
bb:	chr11:2154326-2154533(-)$1	207	76	79	8.9999
:FF	chr13:21751200-21751543(+)$1	343	124	127	8.9999
EEE	chr3:194831663-194832056(-)$1	393	53	56	8.9999
::d	chr11:811511-811740(+)$1	229	0	3	8.9999
BBC	chr17:73261681-73261942(+)$1	261	0	3	8.9999
:::	chr11:2154211-2154414(-)$1	203	23	26	8.9999
ddd	chr22:31740324-31740592(-)$1	268	13	16	8.9999
ff:	chr9:136797883-136798153(-)$1	270	17	20	8.9999
:::	chr11:61732132-61732339(-)$1	207	22	25	8.9999
qqq	chr12:120638492-120638712(-)$1	220	49	52	8.9999
nnn	chr16:81609802-81610077(+)$1	275	17	20	8.9999
GG{	chr2:241465802-241466065(-)$1	263	10	13	8.9999
:::	chr6:145118940-145119177(+)$1	237	15	18	8.9999
qee	chr2:38960951-38961227(+)$1	276	23	26	8.9999
:::	chr11:63881477-63881720(-)$1	243	1	4	8.9999
:::	chr11:2152102-2152307(-)$1	205	3	6	8.9999
:::	chr11:2152333-2152535(-)$1	202	4	7	8.9999
sss	chrX:41045672-41045994(+)$1	322	70	73	8.9999
qqq	chr12:120638465-120638679(-)$1	214	16	19	8.9999
444	chr11:2152428-2152635(-)$1	207	48	51	8.9999
:::	chr17:80573282-80573551(-)$1	269	5	8	8.9999
:::	chr11:2152149-2152358(-)$1	209	21	24	8.9999
mdd	chr11:2160072-2160281(-)$1	209	73	76	8.9999
###	chr11:2153963-2154168(-)$1	205	7	10	8.9999
ggg	chr9:136799274-136799516(-)$1	242	10	13	8.9999
:HH	chr9:108118391-108118697(+)$1	306	97	100	8.9999
+++	chr11:2159436-2159640(-)$1	204	20	23	8.9999
CC:	chr11:2159452-2159656(-)$1	204	36	39	8.9999
:::	chr11:2154083-2154291(-)$1	208	16	19	8.9999
:::	chr5:180668409-180668636(-)$1	227	2	5	8.9999
b::	chr11:2156590-2156795(-)$1	205	15	18	8.9999
FFF	chr3:197680854-197681070(+)$1	216	44	47	8.9999
CC:	chr11:2159426-2159630(-)$1	204	10	13	8.9999
EE{	chr11:65194609-65194821(+)$1	212	121	124	8.9999
:II	chr11:61732161-61732378(-)$1	217	1	4	8.9999
:::	chr2:241467043-241467320(-)$1	277	33	36	8.9999
:dd	chr13:48832256-48832472(+)$1	216	1	4	8.9999
ddd	chr6:33243485-33243695(+)$1	210	143	146	8.9999
:::	chr11:62285998-62286302(-)$1	304	29	32	8.9999
%%%	chr19:46190670-46190955(-)$1	285	20	23	8.9999
FFF	chrX:53655391-53655615(-)$1	224	29	32	8.9999
::E	chr12:6645838-6646042(+)$1	204	7	10	8.9999
:::	chr11:2153448-2153656(-)$1	208	2	5	8.9999
DDD	chr2:10539802-10540162(+)$1	360	119	122	8.9999
cc%	chr12:113826645-113826918(+)$1	273	22	25	8.9999
HHH	chr2:241466146-241466482(-)$1	336	17	20	8.9999
qqq	chr12:120638512-120638723(-)$1	211	60	63	8.9999
ddc	chrX:71493681-71493897(-)$1	216	2	5	8.9999
qqq	chr3:52027817-52028032(-)$1	215	20	23	8.9999
CC:	chr16:81609956-81610236(+)$1	280	20	23	8.9999
:::	chr3:52027841-52028069(-)$1	228	0	3	8.9999
DD{	chr6:7565634-7565853(+)$1	219	12	15	8.9999
:::	chr2:21234042-21234249(-)$1	207	2	5	8.9999
===	chr11:2152282-2152484(-)$1	202	77	80	8.9999
lcc	chr11:2153511-2153713(-)$1	202	59	62	8.9999
fff	chr7:157610047-157610317(-)$1	270	81	84	8.9999
]ff	chr12:1005196-1005454(+)$1	258	63	66	8.9999
eee	chr9:136800417-136800675(-)$1	258	4	7	8.9999
ggg	chr22:38270320-38270612(+)$1	292	168	171	8.9999
EEE	chr3:197680811-197681024(+)$1	213	15	18	8.9999
eee	chr17:75466819-75467125(+)$1	306	2	5	8.9999
:::	chr12:6646934-6647140(+)$1	206	2	5	8.9999
:JJ	chr20:4834599-4834891(-)$1	292	18	21	8.9999
ccc	chr5:149825093-149825324(-)$1	231	27	30	8.9999
EEE	chr16:58612502-58612732(-)$1	230	42	45	8.9999
3ee	chr5:149826396-149826605(-)$1	209	75	78	8.9999
===	chr11:2151075-2151277(-)$1	202	4	7	8.9999
FFF	chr11:62293934-62294212(-)$1	278	31	34	8.9999
eee	chr11:2159386-2159590(-)$1	204	28	31	8.9999
^^^	chr9:80934705-80934989(+)$1	284	122	125	8.9999
c$$	chr1:93299101-93299317(+)$1	216	66	69	8.9999
mmm	chr2:47130986-47131286(-)$1	300	7	10	8.9999
ddp	chr19:10930555-10930862(+)$1	307	90	93	8.9999
EEE	chr11:2156628-2156830(-)$1	202	50	53	8.9999
eee	chr19:39924063-39924265(-)$1	202	68	71	8.9999
f::	chr16:81608970-81609221(+)$1	251	131	134	8.9999
gg[	chr9:80934203-80934522(+)$1	319	64	67	8.9999
nnn	chr1:153963573-153963796(+)$1	223	44	47	8.9999
lcc	chr11:2153486-2153691(-)$1	205	37	40	8.9999
mbb	chrX:71494826-71495040(-)$1	214	91	94	8.9999
BBG	chr11:2154120-2154326(-)$1	206	21	24	8.9999
MMM	chr17:80218555-80218839(-)$1	284	31	34	8.9999
ell	chr12:113826775-113827039(+)$1	264	17	20	8.9999
GG:	chr7:158235090-158235327(-)$1	237	93	96	8.9999
::f	chr11:2159733-2159944(-)$1	211	39	42	8.9999
ee!	chr22:35740308-35740558(+)$1	250	28	31	8.9999
ee]	chr17:80107103-80107548(-)$1	445	44	47	8.9999
+++	chr10:5810185-5810448(-)$1	263	27	30	8.9999
==[	chr5:149827114-149827320(-)$1	206	14	17	8.9999

#DB
.))	chr11:2160060-2160264(-)$1	1	56	59	8.9999
...	chr11:2154787-2154990(-)$1	1	91	94	8.9999
...	chr21:46574968-46575277(+)$1	1	80	83	8.9999
...	chr11:2152335-2152542(-)$1	1	11	14	8.9999
(.(	chr15:99478487-99478714(+)$1	1	15	18	8.9999
(((	chr7:100781158-100781366(+)$1	1	13	16	8.9999
.((	chr15:77348359-77348612(-)$1	1	77	80	8.9999
(((	chr2:10453287-10453579(+)$1	1	23	26	8.9999
)).	chr11:2154326-2154533(-)$1	1	76	79	8.9999
.((	chr13:21751200-21751543(+)$1	1	124	127	8.9999
(((	chr3:194831663-194832056(-)$1	1	53	56	8.9999
..(	chr11:811511-811740(+)$1	1	0	3	8.9999
(((	chr17:73261681-73261942(+)$1	1	0	3	8.9999
...	chr11:2154211-2154414(-)$1	1	23	26	8.9999
)))	chr22:31740324-31740592(-)$1	1	13	16	8.9999
)).	chr9:136797883-136798153(-)$1	1	17	20	8.9999
...	chr11:61732132-61732339(-)$1	1	22	25	8.9999
...	chr12:120638492-120638712(-)$1	1	49	52	8.9999
...	chr16:81609802-81610077(+)$1	1	17	20	8.9999
((.	chr2:241465802-241466065(-)$1	1	10	13	8.9999
...	chr6:145118940-145119177(+)$1	1	15	18	8.9999
.))	chr2:38960951-38961227(+)$1	1	23	26	8.9999
...	chr11:63881477-63881720(-)$1	1	1	4	8.9999
...	chr11:2152102-2152307(-)$1	1	3	6	8.9999
...	chr11:2152333-2152535(-)$1	1	4	7	8.9999
...	chrX:41045672-41045994(+)$1	1	70	73	8.9999
...	chr12:120638465-120638679(-)$1	1	16	19	8.9999
...	chr11:2152428-2152635(-)$1	1	48	51	8.9999
...	chr17:80573282-80573551(-)$1	1	5	8	8.9999
...	chr11:2152149-2152358(-)$1	1	21	24	8.9999
.))	chr11:2160072-2160281(-)$1	1	73	76	8.9999
...	chr11:2153963-2154168(-)$1	1	7	10	8.9999
(((	chr9:136799274-136799516(-)$1	1	10	13	8.9999
.))	chr9:108118391-108118697(+)$1	1	97	100	8.9999
...	chr11:2159436-2159640(-)$1	1	20	23	8.9999
((.	chr11:2159452-2159656(-)$1	1	36	39	8.9999
...	chr11:2154083-2154291(-)$1	1	16	19	8.9999
...	chr5:180668409-180668636(-)$1	1	2	5	8.9999
)..	chr11:2156590-2156795(-)$1	1	15	18	8.9999
(((	chr3:197680854-197681070(+)$1	1	44	47	8.9999
((.	chr11:2159426-2159630(-)$1	1	10	13	8.9999
((.	chr11:65194609-65194821(+)$1	1	121	124	8.9999
.((	chr11:61732161-61732378(-)$1	1	1	4	8.9999
...	chr2:241467043-241467320(-)$1	1	33	36	8.9999
.((	chr13:48832256-48832472(+)$1	1	1	4	8.9999
)))	chr6:33243485-33243695(+)$1	1	143	146	8.9999
...	chr11:62285998-62286302(-)$1	1	29	32	8.9999
...	chr19:46190670-46190955(-)$1	1	20	23	8.9999
(((	chrX:53655391-53655615(-)$1	1	29	32	8.9999
..(	chr12:6645838-6646042(+)$1	1	7	10	8.9999
...	chr11:2153448-2153656(-)$1	1	2	5	8.9999
)))	chr2:10539802-10540162(+)$1	1	119	122	8.9999
((.	chr12:113826645-113826918(+)$1	1	22	25	8.9999
(((	chr2:241466146-241466482(-)$1	1	17	20	8.9999
...	chr12:120638512-120638723(-)$1	1	60	63	8.9999
(((	chrX:71493681-71493897(-)$1	1	2	5	8.9999
...	chr3:52027817-52028032(-)$1	1	20	23	8.9999
((.	chr16:81609956-81610236(+)$1	1	20	23	8.9999
...	chr3:52027841-52028069(-)$1	1	0	3	8.9999
((.	chr6:7565634-7565853(+)$1	1	12	15	8.9999
...	chr2:21234042-21234249(-)$1	1	2	5	8.9999
)))	chr11:2152282-2152484(-)$1	1	77	80	8.9999
.))	chr11:2153511-2153713(-)$1	1	59	62	8.9999
)))	chr7:157610047-157610317(-)$1	1	81	84	8.9999
.))	chr12:1005196-1005454(+)$1	1	63	66	8.9999
(((	chr9:136800417-136800675(-)$1	1	4	7	8.9999
)))	chr22:38270320-38270612(+)$1	1	168	171	8.9999
(((	chr3:197680811-197681024(+)$1	1	15	18	8.9999
(((	chr17:75466819-75467125(+)$1	1	2	5	8.9999
...	chr12:6646934-6647140(+)$1	1	2	5	8.9999
.((	chr20:4834599-4834891(-)$1	1	18	21	8.9999
(((	chr5:149825093-149825324(-)$1	1	27	30	8.9999
(((	chr16:58612502-58612732(-)$1	1	42	45	8.9999
.))	chr5:149826396-149826605(-)$1	1	75	78	8.9999
(((	chr11:2151075-2151277(-)$1	1	4	7	8.9999
(((	chr11:62293934-62294212(-)$1	1	31	34	8.9999
(((	chr11:2159386-2159590(-)$1	1	28	31	8.9999
...	chr9:80934705-80934989(+)$1	1	122	125	8.9999
(..	chr1:93299101-93299317(+)$1	1	66	69	8.9999
...	chr2:47130986-47131286(-)$1	1	7	10	8.9999
((.	chr19:10930555-10930862(+)$1	1	90	93	8.9999
(((	chr11:2156628-2156830(-)$1	1	50	53	8.9999
(((	chr19:39924063-39924265(-)$1	1	68	71	8.9999
)..	chr16:81608970-81609221(+)$1	1	131	134	8.9999
((.	chr9:80934203-80934522(+)$1	1	64	67	8.9999
...	chr1:153963573-153963796(+)$1	1	44	47	8.9999
.))	chr11:2153486-2153691(-)$1	1	37	40	8.9999
.))	chrX:71494826-71495040(-)$1	1	91	94	8.9999
(((	chr11:2154120-2154326(-)$1	1	21	24	8.9999
...	chr17:80218555-80218839(-)$1	1	31	34	8.9999
(..	chr12:113826775-113827039(+)$1	1	17	20	8.9999
((.	chr7:158235090-158235327(-)$1	1	93	96	8.9999
..(	chr11:2159733-2159944(-)$1	1	39	42	8.9999
((.	chr22:35740308-35740558(+)$1	1	28	31	8.9999
)).	chr17:80107103-80107548(-)$1	1	44	47	8.9999
...	chr10:5810185-5810448(-)$1	1	27	30	8.9999
((.	chr5:149827114-149827320(-)$1	1	14	17	8.9999

#PSSM
C : 0.88	c : 0.11	
C : 0.88	c : 0.11	
A : 0.88	a : 0.11	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_transcript_m1_run2.nuc.txt

#NT
UGA	chr3:47033820-47034100(+)$1	280	182	185	9.0000
UGA	chr1:245025359-245025641(-)$1	282	101	104	9.0000
UGA	chr6:31509563-31509830(-)$1	267	43	46	9.0000
UGA	chr15:93524579-93524833(+)$1	254	29	32	9.0000
UGA	chr9:137029549-137029767(-)$1	218	89	92	9.0000
UGA	chr2:3625354-3625606(+)$1	252	11	14	9.0000
UGA	chr6:135511844-135512089(+)$1	245	56	59	9.0000
UGA	chr11:67953086-67953381(-)$1	295	5	8	9.0000
UGA	chr7:36463636-36463881(+)$1	245	7	10	9.0000
UGA	chr19:48282040-48282372(+)$1	332	228	231	9.0000
UGA	chr17:34869094-34869379(-)$1	285	41	44	9.0000
uga	chr4:110913473-110913696(+)$1	223	43	46	9.0000
UGA	chr8:117863913-117864201(-)$1	288	7	10	9.0000
UGA	chr16:57794482-57794765(-)$1	283	100	103	9.0000
UGA	chr10:69803890-69804193(-)$1	303	43	46	9.0000
UGA	chr2:219143476-219143708(-)$1	232	9	12	9.0000
UGA	chr1:155932244-155932481(-)$1	237	99	102	9.0000
UGA	chr5:65340089-65340411(+)$1	322	9	12	9.0000
UGA	chr22:46681041-46681368(+)$1	327	104	107	9.0000
UGA	chr17:71202862-71203132(+)$1	270	0	3	9.0000
UGA	chr4:88012891-88013139(+)$1	248	101	104	9.0000
UGA	chrX:110955661-110955977(+)$1	316	119	122	9.0000
UGA	chr8:48793703-48793992(-)$1	289	24	27	9.0000
UGA	chr2:153550836-153551097(-)$1	261	51	54	9.0000
UGA	chr7:36478836-36479096(+)$1	260	31	34	9.0000
UGA	chr12:102117557-102117846(+)$1	289	124	127	9.0000
uga	chr14:102549206-102549466(-)$1	260	2	5	9.0000
UGA	chr22:20905673-20906005(+)$1	332	130	133	9.0000
UGA	chr6:34392718-34392939(-)$1	221	77	80	9.0000
UGA	chr11:85753547-85753805(-)$1	258	31	34	9.0000
UGA	chr14:23559611-23559829(-)$1	218	0	3	9.0000
UGA	chr15:74710971-74711234(-)$1	263	56	59	9.0000
uga	chr2:55805111-55805376(-)$1	265	0	3	9.0000
UGA	chr16:18853236-18853529(-)$1	293	59	62	9.0000
UGA	chr1:100515485-100515745(+)$1	260	55	58	9.0000
UGA	chr8:124034712-124035033(-)$1	321	18	21	9.0000
UGA	chr3:42681186-42681431(+)$1	245	57	60	9.0000
UGA	chr9:128094766-128095088(+)$1	322	38	41	9.0000
UGA	chr16:89965254-89965494(+)$1	240	0	3	9.0000
UGA	chr15:93428690-93428948(+)$1	258	10	13	9.0000
UGA	chr19:56172282-56172523(+)$1	241	33	36	9.0000
UGA	chr21:47663226-47663468(-)$1	242	19	22	9.0000
uga	chr19:11225839-11226109(+)$1	270	142	145	9.0000
uga	chr19:9268025-9268276(+)$1	251	80	83	9.0000
UGA	chr11:369937-370207(+)$1	270	254	257	9.0000
UGA	chr1:21502707-21503033(-)$1	326	149	152	9.0000
UGA	chr11:62567546-62567794(-)$1	248	13	16	9.0000
uga	chr13:27828445-27828658(+)$1	213	149	152	9.0000
UGA	chr19:49993737-49993969(+)$1	232	24	27	9.0000
UGA	chr17:21208336-21208688(+)$1	352	28	31	9.0000
uga	chr12:9559724-9560018(-)$1	294	4	7	9.0000
UGA	chr6:44273880-44274117(-)$1	237	57	60	9.0000
UGA	chr21:47864477-47864729(+)$1	252	124	127	9.0000
UGA	chr1:53727595-53727857(-)$1	262	36	39	9.0000
UGA	chr9:135228873-135229125(-)$1	252	17	20	9.0000
UGA	chr2:97530960-97531285(-)$1	325	46	49	9.0000
UGA	chr2:27558773-27559039(-)$1	266	11	14	9.0000
UGA	chr5:141009121-141009362(-)$1	241	34	37	9.0000
UGA	chr21:40589917-40590187(-)$1	270	17	20	9.0000
UGA	chr1:186368080-186368382(+)$1	302	24	27	9.0000
UGA	chr21:34827922-34828158(-)$1	236	4	7	9.0000
UGA	chr5:145859828-145860119(+)$1	291	45	48	9.0000
UGA	chr2:131897740-131897991(+)$1	251	151	154	9.0000
UGA	chr1:168007690-168007986(+)$1	296	17	20	9.0000
UGA	chr17:27620538-27620816(-)$1	278	172	175	9.0000
UGA	chr1:11715221-11715534(+)$1	313	181	184	9.0000
UGA	chr19:1093728-1094011(-)$1	283	23	26	9.0000
UGA	chr9:90254162-90254418(+)$1	256	108	111	9.0000
UGA	chr6:160160015-160160298(+)$1	283	13	16	9.0000
UGA	chr1:206775479-206775729(-)$1	250	53	56	9.0000
UGA	chr2:32712805-32713058(+)$1	253	66	69	9.0000
uga	chr2:202027709-202027984(+)$1	275	133	136	9.0000
UGA	chr1:247063515-247063768(-)$1	253	7	10	9.0000
UGA	chr4:75023930-75024231(+)$1	301	64	67	9.0000
UGA	chr2:26477427-26477707(+)$1	280	27	30	9.0000
UGA	chr1:156506710-156506988(-)$1	278	92	95	9.0000
UGA	chr2:128937337-128937590(+)$1	253	27	30	9.0000
uga	chr11:17096383-17096606(-)$1	223	101	104	9.0000
UGA	chr17:30678842-30679084(+)$1	242	124	127	9.0000
UGA	chr5:32399946-32400204(-)$1	258	56	59	9.0000
UGA	chr14:102466364-102466614(+)$1	250	5	8	9.0000
UGA	chr9:37498166-37498440(+)$1	274	64	67	9.0000
UGA	chr12:57033446-57033656(-)$1	210	3	6	9.0000
UGA	chr6:30553677-30553940(+)$1	263	20	23	9.0000
UGA	chr7:112098915-112099184(+)$1	269	7	10	9.0000
UGA	chr9:33036996-33037255(+)$1	259	56	59	9.0000
UGA	chr1:231475431-231475776(+)$1	345	7	10	9.0000
UGA	chr14:73420847-73421110(+)$1	263	90	93	9.0000
UGA	chr9:125645300-125645591(-)$1	291	147	150	9.0000
UGA	chr11:93466334-93466593(-)$1	259	63	66	9.0000
UGA	chr6:31656428-31656682(-)$1	254	48	51	9.0000
UGA	chr7:150642466-150642726(-)$1	260	144	147	9.0000
UGA	chr12:123465709-123466055(+)$1	346	138	141	9.0000
UGA	chr17:72200022-72200322(+)$1	300	76	79	9.0000
UGA	chr17:76120357-76120634(-)$1	277	31	34	9.0000
UGA	chr10:82273743-82274029(+)$1	286	41	44	9.0000
UGA	chr16:30972748-30973009(+)$1	261	99	102	9.0000
UGA	chr7:1012564-1012837(-)$1	273	22	25	9.0000
UGA	chr5:37329150-37329402(-)$1	252	31	34	9.0000

#otherMatches

#Struct PSSM
ddc	chr12:132402887-132403135(+)$1	248	227	230	9.0000
hhh	chr3:47033820-47034100(+)$1	280	182	185	9.0000
nnn	chr1:245025359-245025641(-)$1	282	101	104	9.0000
bb3	chr6:31509563-31509830(-)$1	267	43	46	9.0000
CKK	chr15:93524579-93524833(+)$1	254	29	32	9.0000
c22	chr9:137029549-137029767(-)$1	218	89	92	9.0000
{BB	chr2:3625354-3625606(+)$1	252	11	14	9.0000
ecc	chr6:135511844-135512089(+)$1	245	56	59	9.0000
eqq	chr11:67953086-67953381(-)$1	295	5	8	9.0000
::E	chr7:36463636-36463881(+)$1	245	7	10	9.0000
hhh	chr19:48282040-48282372(+)$1	332	228	231	9.0000
OHH	chr17:34869094-34869379(-)$1	285	41	44	9.0000
gg"	chr4:110913473-110913696(+)$1	223	43	46	9.0000
eee	chr8:117863913-117864201(-)$1	288	7	10	9.0000
eee	chr16:57794482-57794765(-)$1	283	100	103	9.0000
iii	chr10:69803890-69804193(-)$1	303	43	46	9.0000
c[h	chr2:219143476-219143708(-)$1	232	9	12	9.0000
ff]	chr1:155932244-155932481(-)$1	237	99	102	9.0000
f^^	chr5:65340089-65340411(+)$1	322	9	12	9.0000
:FF	chr22:46681041-46681368(+)$1	327	104	107	9.0000
:bb	chr17:71202862-71203132(+)$1	270	0	3	9.0000
sss	chr4:88012891-88013139(+)$1	248	101	104	9.0000
mee	chrX:110955661-110955977(+)$1	316	119	122	9.0000
[ee	chr8:48793703-48793992(-)$1	289	24	27	9.0000
[ff	chr2:153550836-153551097(-)$1	261	51	54	9.0000
:::	chr7:36478836-36479096(+)$1	260	31	34	9.0000
rrd	chr12:102117557-102117846(+)$1	289	124	127	9.0000
:::	chr14:102549206-102549466(-)$1	260	2	5	9.0000
e[c	chr22:20905673-20906005(+)$1	332	130	133	9.0000
ddn	chr6:34392718-34392939(-)$1	221	77	80	9.0000
!hh	chr11:85753547-85753805(-)$1	258	31	34	9.0000
:::	chr14:23559611-23559829(-)$1	218	0	3	9.0000
rdd	chr15:74710971-74711234(-)$1	263	56	59	9.0000
:DD	chr2:55805111-55805376(-)$1	265	0	3	9.0000
ccc	chr16:18853236-18853529(-)$1	293	59	62	9.0000
ooo	chr1:100515485-100515745(+)$1	260	55	58	9.0000
DDf	chr8:124034712-124035033(-)$1	321	18	21	9.0000
CLL	chr3:42681186-42681431(+)$1	245	57	60	9.0000
DDD	chr9:128094766-128095088(+)$1	322	38	41	9.0000
CCC	chr16:89965254-89965494(+)$1	240	0	3	9.0000
FFF	chr15:93428690-93428948(+)$1	258	10	13	9.0000
dd[	chr19:56172282-56172523(+)$1	241	33	36	9.0000
ddm	chr21:47663226-47663468(-)$1	242	19	22	9.0000
fff	chr19:11225839-11226109(+)$1	270	142	145	9.0000
[dd	chr19:9268025-9268276(+)$1	251	80	83	9.0000
dll	chr11:369937-370207(+)$1	270	254	257	9.0000
ccc	chr1:21502707-21503033(-)$1	326	149	152	9.0000
dmm	chr11:62567546-62567794(-)$1	248	13	16	9.0000
^^^	chr13:27828445-27828658(+)$1	213	149	152	9.0000
]cc	chr19:49993737-49993969(+)$1	232	24	27	9.0000
cc[	chr17:21208336-21208688(+)$1	352	28	31	9.0000
CKK	chr12:9559724-9560018(-)$1	294	4	7	9.0000
ldd	chr6:44273880-44274117(-)$1	237	57	60	9.0000
mcc	chr21:47864477-47864729(+)$1	252	124	127	9.0000
DD:	chr1:53727595-53727857(-)$1	262	36	39	9.0000
bb"	chr9:135228873-135229125(-)$1	252	17	20	9.0000
:::	chr2:97530960-97531285(-)$1	325	46	49	9.0000
!cc	chr2:27558773-27559039(-)$1	266	11	14	9.0000
ndd	chr5:141009121-141009362(-)$1	241	34	37	9.0000
"""	chr21:40589917-40590187(-)$1	270	17	20	9.0000
ddm	chr1:186368080-186368382(+)$1	302	24	27	9.0000
:::	chr21:34827922-34828158(-)$1	236	4	7	9.0000
eee	chr5:145859828-145860119(+)$1	291	45	48	9.0000
}A}	chr2:131897740-131897991(+)$1	251	151	154	9.0000
DDD	chr1:168007690-168007986(+)$1	296	17	20	9.0000
ndd	chr17:27620538-27620816(-)$1	278	172	175	9.0000
ccc	chr1:11715221-11715534(+)$1	313	181	184	9.0000
FF{	chr19:1093728-1094011(-)$1	283	23	26	9.0000
ccc	chr9:90254162-90254418(+)$1	256	108	111	9.0000
MEE	chr6:160160015-160160298(+)$1	283	13	16	9.0000
!!e	chr1:206775479-206775729(-)$1	250	53	56	9.0000
eee	chr2:32712805-32713058(+)$1	253	66	69	9.0000
"bb	chr2:202027709-202027984(+)$1	275	133	136	9.0000
gg"	chr1:247063515-247063768(-)$1	253	7	10	9.0000
III	chr4:75023930-75024231(+)$1	301	64	67	9.0000
ddm	chr2:26477427-26477707(+)$1	280	27	30	9.0000
ooo	chr1:156506710-156506988(-)$1	278	92	95	9.0000
mme	chr2:128937337-128937590(+)$1	253	27	30	9.0000
d22	chr11:17096383-17096606(-)$1	223	101	104	9.0000
HHH	chr17:30678842-30679084(+)$1	242	124	127	9.0000
3bb	chr5:32399946-32400204(-)$1	258	56	59	9.0000
:::	chr14:102466364-102466614(+)$1	250	5	8	9.0000
c""	chr9:37498166-37498440(+)$1	274	64	67	9.0000
HHH	chr12:57033446-57033656(-)$1	210	3	6	9.0000
e::	chr6:30553677-30553940(+)$1	263	20	23	9.0000
:::	chr7:112098915-112099184(+)$1	269	7	10	9.0000
eee	chr9:33036996-33037255(+)$1	259	56	59	9.0000
CMM	chr1:231475431-231475776(+)$1	345	7	10	9.0000
dd!	chr14:73420847-73421110(+)$1	263	90	93	9.0000
ccc	chr9:125645300-125645591(-)$1	291	147	150	9.0000
ggg	chr11:93466334-93466593(-)$1	259	63	66	9.0000
GGM	chr6:31656428-31656682(-)$1	254	48	51	9.0000
]ff	chr7:150642466-150642726(-)$1	260	144	147	9.0000
b22	chr12:123465709-123466055(+)$1	346	138	141	9.0000
c[b	chr17:72200022-72200322(+)$1	300	76	79	9.0000
ggg	chr17:76120357-76120634(-)$1	277	31	34	9.0000
f::	chr10:82273743-82274029(+)$1	286	41	44	9.0000
ddd	chr16:30972748-30973009(+)$1	261	99	102	9.0000
ff^	chr7:1012564-1012837(-)$1	273	22	25	9.0000
JJJ	chr5:37329150-37329402(-)$1	252	31	34	9.0000

#DB
(((	chr12:132402887-132403135(+)$1	1	227	230	9.0000
(((	chr3:47033820-47034100(+)$1	1	182	185	9.0000
...	chr1:245025359-245025641(-)$1	1	101	104	9.0000
)).	chr6:31509563-31509830(-)$1	1	43	46	9.0000
(..	chr15:93524579-93524833(+)$1	1	29	32	9.0000
)..	chr9:137029549-137029767(-)$1	1	89	92	9.0000
.((	chr2:3625354-3625606(+)$1	1	11	14	9.0000
)((	chr6:135511844-135512089(+)$1	1	56	59	9.0000
(..	chr11:67953086-67953381(-)$1	1	5	8	9.0000
..(	chr7:36463636-36463881(+)$1	1	7	10	9.0000
(((	chr19:48282040-48282372(+)$1	1	228	231	9.0000
.((	chr17:34869094-34869379(-)$1	1	41	44	9.0000
((.	chr4:110913473-110913696(+)$1	1	43	46	9.0000
(((	chr8:117863913-117864201(-)$1	1	7	10	9.0000
)))	chr16:57794482-57794765(-)$1	1	100	103	9.0000
(((	chr10:69803890-69804193(-)$1	1	43	46	9.0000
(.(	chr2:219143476-219143708(-)$1	1	9	12	9.0000
)).	chr1:155932244-155932481(-)$1	1	99	102	9.0000
(..	chr5:65340089-65340411(+)$1	1	9	12	9.0000
.))	chr22:46681041-46681368(+)$1	1	104	107	9.0000
.((	chr17:71202862-71203132(+)$1	1	0	3	9.0000
...	chr4:88012891-88013139(+)$1	1	101	104	9.0000
.))	chrX:110955661-110955977(+)$1	1	119	122	9.0000
.((	chr8:48793703-48793992(-)$1	1	24	27	9.0000
.((	chr2:153550836-153551097(-)$1	1	51	54	9.0000
...	chr7:36478836-36479096(+)$1	1	31	34	9.0000
..)	chr12:102117557-102117846(+)$1	1	124	127	9.0000
...	chr14:102549206-102549466(-)$1	1	2	5	9.0000
(.(	chr22:20905673-20906005(+)$1	1	130	133	9.0000
((.	chr6:34392718-34392939(-)$1	1	77	80	9.0000
.((	chr11:85753547-85753805(-)$1	1	31	34	9.0000
...	chr14:23559611-23559829(-)$1	1	0	3	9.0000
.))	chr15:74710971-74711234(-)$1	1	56	59	9.0000
.((	chr2:55805111-55805376(-)$1	1	0	3	9.0000
)))	chr16:18853236-18853529(-)$1	1	59	62	9.0000
...	chr1:100515485-100515745(+)$1	1	55	58	9.0000
(((	chr8:124034712-124035033(-)$1	1	18	21	9.0000
(..	chr3:42681186-42681431(+)$1	1	57	60	9.0000
(((	chr9:128094766-128095088(+)$1	1	38	41	9.0000
(((	chr16:89965254-89965494(+)$1	1	0	3	9.0000
(((	chr15:93428690-93428948(+)$1	1	10	13	9.0000
((.	chr19:56172282-56172523(+)$1	1	33	36	9.0000
((.	chr21:47663226-47663468(-)$1	1	19	22	9.0000
)))	chr19:11225839-11226109(+)$1	1	142	145	9.0000
.((	chr19:9268025-9268276(+)$1	1	80	83	9.0000
(..	chr11:369937-370207(+)$1	1	254	257	9.0000
(((	chr1:21502707-21503033(-)$1	1	149	152	9.0000
(..	chr11:62567546-62567794(-)$1	1	13	16	9.0000
...	chr13:27828445-27828658(+)$1	1	149	152	9.0000
.))	chr19:49993737-49993969(+)$1	1	24	27	9.0000
((.	chr17:21208336-21208688(+)$1	1	28	31	9.0000
(..	chr12:9559724-9560018(-)$1	1	4	7	9.0000
.))	chr6:44273880-44274117(-)$1	1	57	60	9.0000
.))	chr21:47864477-47864729(+)$1	1	124	127	9.0000
((.	chr1:53727595-53727857(-)$1	1	36	39	9.0000
((.	chr9:135228873-135229125(-)$1	1	17	20	9.0000
...	chr2:97530960-97531285(-)$1	1	46	49	9.0000
.((	chr2:27558773-27559039(-)$1	1	11	14	9.0000
.))	chr5:141009121-141009362(-)$1	1	34	37	9.0000
...	chr21:40589917-40590187(-)$1	1	17	20	9.0000
((.	chr1:186368080-186368382(+)$1	1	24	27	9.0000
...	chr21:34827922-34828158(-)$1	1	4	7	9.0000
)))	chr5:145859828-145860119(+)$1	1	45	48	9.0000
.).	chr2:131897740-131897991(+)$1	1	151	154	9.0000
(((	chr1:168007690-168007986(+)$1	1	17	20	9.0000
.))	chr17:27620538-27620816(-)$1	1	172	175	9.0000
)))	chr1:11715221-11715534(+)$1	1	181	184	9.0000
((.	chr19:1093728-1094011(-)$1	1	23	26	9.0000
)))	chr9:90254162-90254418(+)$1	1	108	111	9.0000
.((	chr6:160160015-160160298(+)$1	1	13	16	9.0000
..(	chr1:206775479-206775729(-)$1	1	53	56	9.0000
)))	chr2:32712805-32713058(+)$1	1	66	69	9.0000
.((	chr2:202027709-202027984(+)$1	1	133	136	9.0000
((.	chr1:247063515-247063768(-)$1	1	7	10	9.0000
(((	chr4:75023930-75024231(+)$1	1	64	67	9.0000
((.	chr2:26477427-26477707(+)$1	1	27	30	9.0000
...	chr1:156506710-156506988(-)$1	1	92	95	9.0000
..)	chr2:128937337-128937590(+)$1	1	27	30	9.0000
)..	chr11:17096383-17096606(-)$1	1	101	104	9.0000
)))	chr17:30678842-30679084(+)$1	1	124	127	9.0000
.))	chr5:32399946-32400204(-)$1	1	56	59	9.0000
...	chr14:102466364-102466614(+)$1	1	5	8	9.0000
(..	chr9:37498166-37498440(+)$1	1	64	67	9.0000
(((	chr12:57033446-57033656(-)$1	1	3	6	9.0000
)..	chr6:30553677-30553940(+)$1	1	20	23	9.0000
...	chr7:112098915-112099184(+)$1	1	7	10	9.0000
(((	chr9:33036996-33037255(+)$1	1	56	59	9.0000
(..	chr1:231475431-231475776(+)$1	1	7	10	9.0000
((.	chr14:73420847-73421110(+)$1	1	90	93	9.0000
)))	chr9:125645300-125645591(-)$1	1	147	150	9.0000
(((	chr11:93466334-93466593(-)$1	1	63	66	9.0000
((.	chr6:31656428-31656682(-)$1	1	48	51	9.0000
.))	chr7:150642466-150642726(-)$1	1	144	147	9.0000
)..	chr12:123465709-123466055(+)$1	1	138	141	9.0000
(.(	chr17:72200022-72200322(+)$1	1	76	79	9.0000
(((	chr17:76120357-76120634(-)$1	1	31	34	9.0000
)..	chr10:82273743-82274029(+)$1	1	41	44	9.0000
)))	chr16:30972748-30973009(+)$1	1	99	102	9.0000
((.	chr7:1012564-1012837(-)$1	1	22	25	9.0000
(((	chr5:37329150-37329402(-)$1	1	31	34	9.0000

#PSSM
U : 0.91	u : 0.09	
G : 0.91	g : 0.09	
A : 0.91	a : 0.09	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_UTR_m1_run1.nuc.txt

#NT
UUGUAAAU	chr20:33302543-33302817(-)$1	274	88	96	20.8750
CUGUAAAU	chr12:76747744-76747974(-)$1	230	97	105	19.5208
UUGUAAAU	chr1:28177814-28178120(+)$1	306	199	207	20.8750
UUGUAAAU	chr15:90171047-90171327(+)$1	280	124	132	20.8750
AUGUAAAU	chr14:76967896-76968122(+)$1	226	211	219	19.6250
AUGUAAAU	chr17:40463040-40463319(+)$1	279	117	125	19.6250
AUGUAAAU	chr1:184659616-184659864(-)$1	248	214	222	19.6250
UUGUAAAU	chr11:46342531-46342794(+)$1	263	152	160	20.8750
AUGUAAAU	chrX:152961331-152961569(+)$1	238	8	16	19.6250
CUGUAAAU	chr6:76425410-76425697(+)$1	287	66	74	19.5208
CUGUAAAU	chr11:118621960-118622243(-)$1	283	144	152	19.5208
CUGUAAAU	chr18:77893404-77893654(+)$1	250	122	130	19.5208
AUGUAAAU	chr1:63906471-63906717(-)$1	246	134	142	19.6250
AUGUAAAU	chr9:101915707-101915987(+)$1	280	130	138	19.6250
UUGUAAAU	chr11:47737989-47738256(-)$1	267	140	148	20.8750
UUGUAUAU	chr16:23593525-23593771(-)$1	246	56	64	17.1250
auguaaau	chr14:59835642-59835883(+)$1	241	70	78	19.6250
UUGUAAAU	chr4:38699990-38700279(+)$1	289	124	132	20.8750
UUGUAUAU	chr6:43303848-43304079(-)$1	231	169	177	17.1250
UUGUAAAU	chr1:205683034-205683302(-)$1	268	101	109	20.8750
UUGUAUAU	chr6:160101907-160102168(-)$1	261	8	16	17.1250
UUGUAAAU	chr5:114949212-114949481(-)$1	269	104	112	20.8750
CUGUAAAU	chr6:15521554-15521808(+)$1	254	53	61	19.5208
CUGUAAAU	chr4:99801091-99801336(-)$1	245	90	98	19.5208
UUGUAAAU	chr19:4443152-4443478(+)$1	326	145	153	20.8750
UUGUAAAU	chr8:62413724-62413967(-)$1	243	117	125	20.8750
CUGUAAAU	chr1:28662274-28662539(+)$1	265	238	246	19.5208
AUGUAAAU	chr20:48740664-48740892(-)$1	228	76	84	19.6250
UUGUAAAU	chr3:194995386-194995748(-)$1	362	152	160	20.8750
CUGUAAAU	chr15:65410912-65411152(-)$1	240	141	149	19.5208
UUGUAUAU	chr10:6277348-6277592(+)$1	244	98	106	17.1250
UUGUAAAU	chr1:43391794-43392042(-)$1	248	151	159	20.8750
CUGUAAAU	chr12:49666886-49667156(+)$1	270	177	185	19.5208
UUGUAUAU	chr1:223967924-223968216(-)$1	292	145	153	17.1250
AUGUAAAU	chr5:133291341-133291640(-)$1	299	137	145	19.6250
UUGUAUAU	chr6:31605387-31605617(+)$1	230	7	15	17.1250
GUGUAAAU	chr20:46284920-46285198(+)$1	278	124	132	18.4791
AUGUAAAU	chr7:66421254-66421487(+)$1	233	103	111	19.6250
AUGUAAAU	chr12:12273818-12274113(-)$1	295	92	100	19.6250
AUGUAAAU	chr19:13261261-13261516(+)$1	255	103	111	19.6250
CUGUAAAU	chr3:5261340-5261592(+)$1	252	155	163	19.5208
UUGUAAAU	chr2:99234737-99235003(+)$1	266	97	105	20.8750
UUGUAAAU	chr5:34908683-34909000(-)$1	317	289	297	20.8750
UUGUAAAU	chr10:115880528-115880844(-)$1	316	134	142	20.8750
uuguaaau	chr20:3028700-3028983(+)$1	283	169	177	20.8750
UUGUAAAU	chr1:114306858-114307137(-)$1	279	252	260	20.8750
CUGUAAAU	chr5:172195156-172195393(-)$1	237	95	103	19.5208

#otherMatches

#Struct PSSM
fffff:::	chr5:110464146-110464396(+)$1	250	106	114	20.8750
d[eeeeem	chr20:33302543-33302817(-)$1	274	88	96	20.8750
nnnnniii	chr12:76747744-76747974(-)$1	230	97	105	19.5208
^^^^^^^^	chr1:28177814-28178120(+)$1	306	199	207	20.8750
ee%%%%%%	chr15:90171047-90171327(+)$1	280	124	132	20.8750
fffff:::	chr14:76967896-76968122(+)$1	226	211	219	19.6250
uuuuuuee	chr17:40463040-40463319(+)$1	279	117	125	19.6250
>>>>>>ee	chr1:184659616-184659864(-)$1	248	214	222	19.6250
gggg:iii	chr11:46342531-46342794(+)$1	263	152	160	20.8750
qqqqqqqd	chrX:152961331-152961569(+)$1	238	8	16	19.6250
ddxxxxxx	chr6:76425410-76425697(+)$1	287	66	74	19.5208
[cccmmmm	chr11:118621960-118622243(-)$1	283	144	152	19.5208
ffff:DDD	chr18:77893404-77893654(+)$1	250	122	130	19.5208
fffffnnn	chr1:63906471-63906717(-)$1	246	134	142	19.6250
hh777777	chr9:101915707-101915987(+)$1	280	130	138	19.6250
::::::::	chr11:47737989-47738256(-)$1	267	140	148	20.8750
:JJJJJJJ	chr16:23593525-23593771(-)$1	246	56	64	17.1250
::::::::	chr14:59835642-59835883(+)$1	241	70	78	19.6250
ddddmmmm	chr4:38699990-38700279(+)$1	289	124	132	20.8750
iii:::ee	chr6:43303848-43304079(-)$1	231	169	177	17.1250
MMHHHHHH	chr1:205683034-205683302(-)$1	268	101	109	20.8750
::ddddee	chr6:160101907-160102168(-)$1	261	8	16	17.1250
========	chr5:114949212-114949481(-)$1	269	104	112	20.8750
odddd::g	chr6:15521554-15521808(+)$1	254	53	61	19.5208
fffff[cc	chr4:99801091-99801336(-)$1	245	90	98	19.5208
FFFFF:::	chr19:4443152-4443478(+)$1	326	145	153	20.8750
ddd22eee	chr8:62413724-62413967(-)$1	243	117	125	20.8750
gggooooo	chr1:28662274-28662539(+)$1	265	238	246	19.5208
lllggggg	chr20:48740664-48740892(-)$1	228	76	84	19.6250
88iiiiii	chr3:194995386-194995748(-)$1	362	152	160	20.8750
dddppppp	chr15:65410912-65411152(-)$1	240	141	149	19.5208
eeeeennn	chr10:6277348-6277592(+)$1	244	98	106	17.1250
fffff]ff	chr1:43391794-43392042(-)$1	248	151	159	20.8750
hh333ccc	chr12:49666886-49667156(+)$1	270	177	185	19.5208
KFFFFFF:	chr1:223967924-223968216(-)$1	292	145	153	17.1250
ddmmmmdd	chr5:133291341-133291640(-)$1	299	137	145	19.6250
iiiiiiii	chr6:31605387-31605617(+)$1	230	7	15	17.1250
ffffffff	chr20:46284920-46285198(+)$1	278	124	132	18.4791
vvvvvvvv	chr7:66421254-66421487(+)$1	233	103	111	19.6250
dddd::::	chr12:12273818-12274113(-)$1	295	92	100	19.6250
gg::::ff	chr19:13261261-13261516(+)$1	255	103	111	19.6250
nnnfffff	chr3:5261340-5261592(+)$1	252	155	163	19.5208
hhhhhhhh	chr2:99234737-99235003(+)$1	266	97	105	20.8750
gg[bbbbo	chr5:34908683-34909000(-)$1	317	289	297	20.8750
555dddd3	chr10:115880528-115880844(-)$1	316	134	142	20.8750
::::::::	chr20:3028700-3028983(+)$1	283	169	177	20.8750
=ppppppp	chr1:114306858-114307137(-)$1	279	252	260	20.8750
eeeevvvv	chr5:172195156-172195393(-)$1	237	95	103	19.5208

#DB
)))))...	chr5:110464146-110464396(+)$1	1	106	114	20.8750
(.(((((.	chr20:33302543-33302817(-)$1	1	88	96	20.8750
.....)))	chr12:76747744-76747974(-)$1	1	97	105	19.5208
........	chr1:28177814-28178120(+)$1	1	199	207	20.8750
((......	chr15:90171047-90171327(+)$1	1	124	132	20.8750
)))))...	chr14:76967896-76968122(+)$1	1	211	219	19.6250
......))	chr17:40463040-40463319(+)$1	1	117	125	19.6250
......))	chr1:184659616-184659864(-)$1	1	214	222	19.6250
)))).(((	chr11:46342531-46342794(+)$1	1	152	160	20.8750
.......)	chrX:152961331-152961569(+)$1	1	8	16	19.6250
((......	chr6:76425410-76425697(+)$1	1	66	74	19.5208
.(((....	chr11:118621960-118622243(-)$1	1	144	152	19.5208
)))).)))	chr18:77893404-77893654(+)$1	1	122	130	19.5208
(((((...	chr1:63906471-63906717(-)$1	1	134	142	19.6250
))......	chr9:101915707-101915987(+)$1	1	130	138	19.6250
........	chr11:47737989-47738256(-)$1	1	140	148	20.8750
.(((((((	chr16:23593525-23593771(-)$1	1	56	64	17.1250
........	chr14:59835642-59835883(+)$1	1	70	78	19.6250
((((....	chr4:38699990-38700279(+)$1	1	124	132	20.8750
)))...((	chr6:43303848-43304079(-)$1	1	169	177	17.1250
..((((((	chr1:205683034-205683302(-)$1	1	101	109	20.8750
..((((((	chr6:160101907-160102168(-)$1	1	8	16	17.1250
((((((((	chr5:114949212-114949481(-)$1	1	104	112	20.8750
.))))..(	chr6:15521554-15521808(+)$1	1	53	61	19.5208
(((((.((	chr4:99801091-99801336(-)$1	1	90	98	19.5208
)))))...	chr19:4443152-4443478(+)$1	1	145	153	20.8750
)))..)))	chr8:62413724-62413967(-)$1	1	117	125	20.8750
(((.....	chr1:28662274-28662539(+)$1	1	238	246	19.5208
...)))))	chr20:48740664-48740892(-)$1	1	76	84	19.6250
..))))))	chr3:194995386-194995748(-)$1	1	152	160	20.8750
(((.....	chr15:65410912-65411152(-)$1	1	141	149	19.5208
(((((...	chr10:6277348-6277592(+)$1	1	98	106	17.1250
))))).))	chr1:43391794-43392042(-)$1	1	151	159	20.8750
))...)))	chr12:49666886-49667156(+)$1	1	177	185	19.5208
.((((((.	chr1:223967924-223968216(-)$1	1	145	153	17.1250
((....))	chr5:133291341-133291640(-)$1	1	137	145	19.6250
((((((((	chr6:31605387-31605617(+)$1	1	7	15	17.1250
((((((((	chr20:46284920-46285198(+)$1	1	124	132	18.4791
........	chr7:66421254-66421487(+)$1	1	103	111	19.6250
))))....	chr12:12273818-12274113(-)$1	1	92	100	19.6250
))....((	chr19:13261261-13261516(+)$1	1	103	111	19.6250
...)))))	chr3:5261340-5261592(+)$1	1	155	163	19.5208
((((((((	chr2:99234737-99235003(+)$1	1	97	105	20.8750
((.((((.	chr5:34908683-34909000(-)$1	1	289	297	20.8750
...)))).	chr10:115880528-115880844(-)$1	1	134	142	20.8750
........	chr20:3028700-3028983(+)$1	1	169	177	20.8750
(.......	chr1:114306858-114307137(-)$1	1	252	260	20.8750
((((....	chr5:172195156-172195393(-)$1	1	95	103	19.5208

#PSSM
U : 0.47	C : 0.22	A : 0.22	a : 0.02	G : 0.02	u : 0.02	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
U : 0.95	u : 0.04	
A : 0.95	a : 0.04	
A : 0.83	U : 0.12	a : 0.04	
A : 0.95	a : 0.04	
U : 0.95	u : 0.04	

#score	947.2083333333336
#seq	48
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_UTR_m2_run1.nuc.txt

#NT
GCUGGGAGAGG	chr16:89806040-89806319(+)$1	279	82	93	17.6363
GCCGGGAAGGG	chr12:58149062-58149371(-)$1	309	133	144	17.6363
GCGGGGAAGGC	chr8:101962988-101963288(-)$1	300	271	282	17.0000
GCCGGGAGGGU	chr17:79868856-79869132(-)$1	276	140	151	17.2727
GCUGCGAGGGG	chr2:242752019-242752225(+)$1	206	70	81	16.8181
GCGGGGUGGGG	chr11:118781156-118781403(-)$1	247	66	77	21.6363
CGGGGGAGGGG	chr17:38334321-38334610(+)$1	289	133	144	17.6363
GCGCGGAGAGG	chr15:70389957-70390251(-)$1	294	163	174	16.5454
ACggggagagg	chr11:843321-843632(+)$1	311	84	95	17.2727
GUGGGGCGGGG	chr4:3513037-3513329(-)$1	292	102	113	18.3636
UCGGGGAGGGG	chr19:59056459-59056745(+)$1	286	208	219	21.2727
GCGGGGCGGGG	chr7:128828635-128828896(+)$1	261	5	16	21.8181
GCGGGGCCGGG	chr2:159314478-159314736(+)$1	258	58	69	18.0909
gcggcgggggg	chr1:2160041-2160332(+)$1	291	44	55	16.8181
GCCGGGUGGGG	chr19:575249-575531(+)$1	282	127	138	18.2727
gcggggcgggg	chr20:62371074-62371331(+)$1	257	8	19	21.8181
GCCGGAAGGGG	chr4:1340969-1341207(+)$1	238	9	20	17.4545
GCGGAGAGGGG	chr17:63556535-63556773(-)$1	238	89	100	20.2727
GUGGGCAGGGG	chr17:77759266-77759512(+)$1	246	107	118	17.6363
AGGGGGAGGGG	chr17:27073804-27074073(+)$1	269	92	103	17.5454
CCGGGGACGGG	chr16:73081628-73081906(-)$1	278	6	17	17.3636
GCAGGGAGAGG	chr17:80192807-80193051(+)$1	244	9	20	17.4545
GCUGGGAGGGG	chr3:52327411-52327679(+)$1	268	124	135	21.3636
GCGGGGAGGGG	chr14:23451335-23451616(-)$1	281	106	117	24.9090
UGGGGGAGGGG	chr8:145013654-145013928(-)$1	274	31	42	17.8181
GCGGGGAGGUG	chr14:69445263-69445523(-)$1	260	76	87	20.2727
GCUGGGACGGG	chr3:195622227-195622533(-)$1	306	117	128	17.6363
GCGGGGCGAGG	chr2:231577502-231577816(+)$1	314	89	100	18.0909
GCGGGGAAGGC	chr16:75284635-75284917(-)$1	282	33	44	17.0000
GCGGGGAGGGG	chr6:131383583-131383844(-)$1	261	9	20	24.9090
UCGGGGCGGGG	chr8:125384395-125384645(-)$1	250	148	159	18.1818
GCGAGGCGGGG	chr17:41623430-41623719(+)$1	289	69	80	17.2727
GCCGGGAGGGG	chr17:72427567-72427831(+)$1	264	67	78	21.5454
CCGGGGAGGGA	chr11:12696159-12696432(+)$1	273	126	137	16.9090
GUGGGGAGGGG	chr1:90308845-90309129(+)$1	284	48	59	21.4545
GCGGGGAGGCG	chr10:124134364-124134612(+)$1	248	78	89	20.3636
GCGGGCAGGGA	chr17:73633076-73633390(-)$1	314	45	56	16.9090
GAGGGGAGGGG	chr1:206907276-206907531(+)$1	255	60	71	21.1818
UCGGGGAGCGG	chr20:62526568-62526801(+)$1	233	52	63	17.1818
GUGGGGAGGGG	chr5:92920273-92920571(+)$1	298	56	67	21.4545
GCAGGGAGGGC	chr21:45724154-45724413(+)$1	259	215	226	17.1818
GCGGGUUGGGG	chr10:74452336-74452635(+)$1	299	118	129	17.4545
GCGGGGGCGGG	chr16:53164973-53165237(+)$1	264	100	111	17.6363
gaggggagggg	chr6:41747991-41748271(+)$1	280	22	33	21.1818
GCGGGGAGGGG	chr12:76477610-76477853(-)$1	243	98	109	24.9090
GCGGGGUGAGG	chr3:98620173-98620427(-)$1	254	100	111	17.9090
GCGGGCACGGG	chr1:200708675-200708945(+)$1	270	4	15	17.3636
UCCGGGAGGGG	chr6:30852101-30852390(+)$1	289	50	61	17.9090
gggAGGAGGGG	chr6:36164477-36164736(-)$1	259	172	183	16.9090
GUGGGGAUGGG	chr1:202776256-202776489(-)$1	233	122	133	17.3636
GCGGGCAGGGC	chr7:100162623-100162866(+)$1	243	215	226	17.0909
GCGGGGUGGGG	chr4:183838131-183838411(-)$1	280	116	127	21.6363
gcggggaggcg	chr9:138371604-138371860(+)$1	256	80	91	20.3636
GCGGGCAGCGG	chr3:48470759-48471046(-)$1	287	234	245	17.0000

#otherMatches

#Struct PSSM
gggg55555ee	chr20:62272015-62272340(-)$1	325	75	86	17.3636
:ccc[ffffff	chr16:89806040-89806319(+)$1	279	82	93	17.6363
ddd[bb$$$$$	chr12:58149062-58149371(-)$1	309	133	144	17.6363
hh]aa333ddd	chr8:101962988-101963288(-)$1	300	271	282	17.0000
hh[bb[eeeee	chr17:79868856-79869132(-)$1	276	140	151	17.2727
ccc]bb22ddd	chr2:242752019-242752225(+)$1	206	70	81	16.8181
hhhhhhh22ee	chr11:118781156-118781403(-)$1	247	66	77	21.6363
:==========	chr17:38334321-38334610(+)$1	289	133	144	17.6363
hhhhh[bbhhh	chr15:70389957-70390251(-)$1	294	163	174	16.5454
ea]bb]dddd=	chr11:843321-843632(+)$1	311	84	95	17.2727
MMEEEEE{CCC	chr4:3513037-3513329(-)$1	292	102	113	18.3636
YYDDDD}IIII	chr19:59056459-59056745(+)$1	286	208	219	21.2727
fflllffffff	chr7:128828635-128828896(+)$1	261	5	16	21.8181
EE::eeeeenn	chr2:159314478-159314736(+)$1	258	58	69	18.0909
iiiiii####f	chr1:2160041-2160332(+)$1	291	44	55	16.8181
cccoooooocc	chr19:575249-575531(+)$1	282	127	138	18.2727
eeee[======	chr20:62371074-62371331(+)$1	257	8	19	21.8181
gggoooooogg	chr4:1340969-1341207(+)$1	238	9	20	17.4545
[a"""a[eeee	chr17:63556535-63556773(-)$1	238	89	100	20.2727
]bbcccfffff	chr17:77759266-77759512(+)$1	246	107	118	17.6363
ggggggggggg	chr17:27073804-27074073(+)$1	269	92	103	17.5454
mmmdddd:FFF	chr16:73081628-73081906(-)$1	278	6	17	17.3636
{A{EEEEEFFF	chr17:80192807-80193051(+)$1	244	9	20	17.4545
cc:BBFFFFFF	chr3:52327411-52327679(+)$1	268	124	135	21.3636
"dddd"""eee	chr14:23451335-23451616(-)$1	281	106	117	24.9090
!a[========	chr8:145013654-145013928(-)$1	274	31	42	17.8181
iiiiiiiccc[	chr14:69445263-69445523(-)$1	260	76	87	20.2727
JJJJJJ:FFFF	chr3:195622227-195622533(-)$1	306	117	128	17.6363
"a[ddddnnnn	chr2:231577502-231577816(+)$1	314	89	100	18.0909
ccc[bbmmmmb	chr16:75284635-75284917(-)$1	282	33	44	17.0000
mmmmbb]eeee	chr6:131383583-131383844(-)$1	261	9	20	24.9090
ggglllggggg	chr8:125384395-125384645(-)$1	250	148	159	18.1818
e[dddd[eeee	chr17:41623430-41623719(+)$1	289	69	80	17.2727
DDDRRRRRRRR	chr17:72427567-72427831(+)$1	264	67	78	21.5454
dddd333ccc2	chr11:12696159-12696432(+)$1	273	126	137	16.9090
IIIIIIIII{D	chr1:90308845-90309129(+)$1	284	48	59	21.4545
hhhhhhheeee	chr10:124134364-124134612(+)$1	248	78	89	20.3636
a[bbeeeeedd	chr17:73633076-73633390(-)$1	314	45	56	16.9090
d]bb]eeeeeD	chr1:206907276-206907531(+)$1	255	60	71	21.1818
sssssssbb::	chr20:62526568-62526801(+)$1	233	52	63	17.1818
DDDMMMMAKKA	chr5:92920273-92920571(+)$1	298	56	67	21.4545
c]ccc]iiiii	chr21:45724154-45724413(+)$1	259	215	226	17.1818
===========	chr10:74452336-74452635(+)$1	299	118	129	17.4545
==========[	chr16:53164973-53165237(+)$1	264	100	111	17.6363
::::A{CCCA{	chr6:41747991-41748271(+)$1	280	22	33	21.1818
[eeeee[aooo	chr12:76477610-76477853(-)$1	243	98	109	24.9090
EEEE:ccc[ee	chr3:98620173-98620427(-)$1	254	100	111	17.9090
BB{A{FFFFFF	chr1:200708675-200708945(+)$1	270	4	15	17.3636
eee]bb:EEEE	chr6:30852101-30852390(+)$1	289	50	61	17.9090
]bb:HHHHHHH	chr6:36164477-36164736(-)$1	259	172	183	16.9090
FFFFF}BBHHH	chr1:202776256-202776489(-)$1	233	122	133	17.3636
HHGGGGGGGCC	chr7:100162623-100162866(+)$1	243	215	226	17.0909
eee]ccc]eee	chr4:183838131-183838411(-)$1	280	116	127	21.6363
]bbhhhhhhhh	chr9:138371604-138371860(+)$1	256	80	91	20.3636
=====[cccpp	chr3:48470759-48471046(-)$1	287	234	245	17.0000

#DB
)))).....))	chr20:62272015-62272340(-)$1	1	75	86	17.3636
.(((.((((((	chr16:89806040-89806319(+)$1	1	82	93	17.6363
(((.((.....	chr12:58149062-58149371(-)$1	1	133	144	17.6363
)).))...)))	chr8:101962988-101963288(-)$1	1	271	282	17.0000
((.((.(((((	chr17:79868856-79869132(-)$1	1	140	151	17.2727
))).))..)))	chr2:242752019-242752225(+)$1	1	70	81	16.8181
)))))))..))	chr11:118781156-118781403(-)$1	1	66	77	21.6363
.((((((((((	chr17:38334321-38334610(+)$1	1	133	144	17.6363
(((((.(((((	chr15:70389957-70390251(-)$1	1	163	174	16.5454
)).)).)))))	chr11:843321-843632(+)$1	1	84	95	17.2727
..(((((.(((	chr4:3513037-3513329(-)$1	1	102	113	18.3636
..)))).))))	chr19:59056459-59056745(+)$1	1	208	219	21.2727
((...))))))	chr7:128828635-128828896(+)$1	1	5	16	21.8181
((..(((((..	chr2:159314478-159314736(+)$1	1	58	69	18.0909
((((((....(	chr1:2160041-2160332(+)$1	1	44	55	16.8181
(((......))	chr19:575249-575531(+)$1	1	127	138	18.2727
((((.((((((	chr20:62371074-62371331(+)$1	1	8	19	21.8181
(((......))	chr4:1340969-1341207(+)$1	1	9	20	17.4545
.(...(.((((	chr17:63556535-63556773(-)$1	1	89	100	20.2727
.)))))(((((	chr17:77759266-77759512(+)$1	1	107	118	17.6363
)))))))))))	chr17:27073804-27074073(+)$1	1	92	103	17.5454
...)))).(((	chr16:73081628-73081906(-)$1	1	6	17	17.3636
.(.((((((((	chr17:80192807-80193051(+)$1	1	9	20	17.4545
)).))))))))	chr3:52327411-52327679(+)$1	1	124	135	21.3636
.((((...(((	chr14:23451335-23451616(-)$1	1	106	117	24.9090
.(.((((((((	chr8:145013654-145013928(-)$1	1	31	42	17.8181
((((((((((.	chr14:69445263-69445523(-)$1	1	76	87	20.2727
)))))).((((	chr3:195622227-195622533(-)$1	1	117	128	17.6363
.(.((((....	chr2:231577502-231577816(+)$1	1	89	100	18.0909
(((.((....)	chr16:75284635-75284917(-)$1	1	33	44	17.0000
....)).))))	chr6:131383583-131383844(-)$1	1	9	20	24.9090
(((...)))))	chr8:125384395-125384645(-)$1	1	148	159	18.1818
(.((((.((((	chr17:41623430-41623719(+)$1	1	69	80	17.2727
(((........	chr17:72427567-72427831(+)$1	1	67	78	21.5454
))))...))).	chr11:12696159-12696432(+)$1	1	126	137	16.9090
(((((((((.(	chr1:90308845-90309129(+)$1	1	48	59	21.4545
)))))))((((	chr10:124134364-124134612(+)$1	1	78	89	20.3636
(.(((((((((	chr17:73633076-73633390(-)$1	1	45	56	16.9090
).)).)))))(	chr1:206907276-206907531(+)$1	1	60	71	21.1818
.......))..	chr20:62526568-62526801(+)$1	1	52	63	17.1818
(((....(..(	chr5:92920273-92920571(+)$1	1	56	67	21.4545
).))).)))))	chr21:45724154-45724413(+)$1	1	215	226	17.1818
)))))))))))	chr10:74452336-74452635(+)$1	1	118	129	17.4545
((((((((((.	chr16:53164973-53165237(+)$1	1	100	111	17.6363
....(.((((.	chr6:41747991-41748271(+)$1	1	22	33	21.1818
.(((((.(...	chr12:76477610-76477853(-)$1	1	98	109	24.9090
((((.(((.((	chr3:98620173-98620427(-)$1	1	100	111	17.9090
((.(.((((((	chr1:200708675-200708945(+)$1	1	4	15	17.3636
))).)).((((	chr6:30852101-30852390(+)$1	1	50	61	17.9090
.)).)))))))	chr6:36164477-36164736(-)$1	1	172	183	16.9090
))))).)))))	chr1:202776256-202776489(-)$1	1	122	133	17.3636
)))))))))))	chr7:100162623-100162866(+)$1	1	215	226	17.0909
))).))).)))	chr4:183838131-183838411(-)$1	1	116	127	21.6363
.))))))))))	chr9:138371604-138371860(+)$1	1	80	91	20.3636
(((((.(((..	chr3:48470759-48471046(-)$1	1	234	245	17.0000

#PSSM
G : 0.72	U : 0.09	g : 0.09	C : 0.05	A : 0.03	
C : 0.72	U : 0.09	G : 0.07	c : 0.05	A : 0.01	a : 0.01	g : 0.01	
G : 0.67	C : 0.10	g : 0.10	U : 0.07	A : 0.03	
G : 0.85	g : 0.09	A : 0.03	C : 0.01	
G : 0.87	g : 0.07	C : 0.01	c : 0.01	A : 0.01	
G : 0.76	g : 0.09	C : 0.09	A : 0.03	U : 0.01	
A : 0.69	C : 0.10	U : 0.09	a : 0.05	g : 0.01	c : 0.01	G : 0.01	
G : 0.74	g : 0.09	C : 0.09	A : 0.05	U : 0.01	
G : 0.78	A : 0.09	g : 0.07	C : 0.03	a : 0.01	
G : 0.87	g : 0.07	U : 0.01	C : 0.01	c : 0.01	
G : 0.78	g : 0.09	C : 0.07	A : 0.03	U : 0.01	

#score	1037.3636363636365
#seq	55
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_transcript_m3_run2.nuc.txt

#NT
UGGCGGC	chr4:26859307-26859598(+)$1	291	71	78	12.6935
UGGGGGC	chr16:88725044-88725303(-)$1	259	79	86	17.0483
UUGGGGC	chr7:5569356-5569623(-)$1	267	125	132	12.6935
UGGGGGU	chr10:70097697-70097963(+)$1	266	97	104	13.3387
UGGGGGG	chrX:41193692-41193942(+)$1	250	181	188	13.0967
UGGGGGU	chrX:70586272-70586623(+)$1	351	87	94	13.3387
UGGGUGC	chr6:43746033-43746273(+)$1	240	71	78	13.1774
UGGGAGC	chr17:73775409-73775671(-)$1	262	2	9	13.5806
UGGGGGG	chr3:100428670-100428988(+)$1	318	98	105	13.0967
UGGCGGC	chr1:245026262-245026521(-)$1	259	22	29	12.6935
UGGGCGC	chr7:5569522-5569794(-)$1	272	9	16	13.2580
UGGGGGC	chr3:47894658-47894935(-)$1	277	2	9	17.0483
UGGGGGC	chr1:151373306-151373598(+)$1	292	153	160	17.0483
UGGAGGC	chr7:6066100-6066390(-)$1	290	152	159	12.6935
UGGGCGC	chr19:2270024-2270227(+)$1	203	9	16	13.2580
AGGGGGC	chr16:88799126-88799366(-)$1	240	176	183	12.6935
GGGGGGC	chr19:11200287-11200582(+)$1	295	49	56	12.7741
UGGGAGC	chr17:62501999-62502240(-)$1	241	54	61	13.5806
UGGGGAC	chr2:38977641-38977917(-)$1	276	44	51	12.6129
GGGGGGC	chr12:123994627-123995021(-)$1	394	335	342	12.7741
UGGGGGC	chr2:178077543-178077800(+)$1	257	99	106	17.0483
UGGGGAC	chr16:2818320-2818551(+)$1	231	51	58	12.6129
UGGGGGA	chr11:126137840-126138086(-)$1	246	3	10	13.2580
UGGGUGC	chr22:50037922-50038173(-)$1	251	146	153	13.1774
UGGGGGA	chr2:97559889-97560189(-)$1	300	159	166	13.2580
UGGGAGC	chr17:62501566-62501822(-)$1	256	3	10	13.5806
UGGAGGC	chr11:72414344-72414560(-)$1	216	143	150	12.6935
CGGGGGC	chr2:131968769-131969054(+)$1	285	2	9	12.9354
ugggggc	chr4:100870965-100871245(-)$1	280	133	140	17.0483
UGGGGGU	chr1:220383868-220384128(-)$1	260	106	113	13.3387
UGGGGUC	chr22:50032850-50033118(-)$1	268	78	85	12.6935
UGGGGUC	chr6:43745469-43745712(+)$1	243	70	77	12.6935
UCGGGGC	chr6:43738480-43738702(+)$1	222	96	103	12.6129
UGCGGGC	chr17:74732714-74732970(-)$1	256	179	186	12.4516
UUGGGGC	chr7:100479927-100480179(+)$1	252	195	202	12.6935
ugggggu	chr5:154136430-154136705(+)$1	275	196	203	13.3387
UGGGGGC	chr17:46053121-46053361(+)$1	240	16	23	17.0483
UGGUGGC	chr15:91455423-91455695(+)$1	272	140	147	12.6935
UGGGGGU	chr17:80050092-80050317(-)$1	225	4	11	13.3387
UUGGGGC	chr10:71929890-71930169(-)$1	279	32	39	12.6935
UGGGCGC	chr7:5569695-5569970(-)$1	275	116	123	13.2580
UGCGGGC	chr1:245026385-245026641(-)$1	256	84	91	12.4516
CGGGGGC	chr11:568100-568380(-)$1	280	88	95	12.9354
UGGGAGC	chrX:12994441-12994697(+)$1	256	77	84	13.5806
UGGGGGC	chr19:18682642-18682916(+)$1	274	101	108	17.0483
UGGGGGC	chr17:79894570-79894827(-)$1	257	105	112	17.0483
UGGGGGC	chr20:42087583-42087826(+)$1	243	0	7	17.0483
UGGGAGC	chr17:26940991-26941300(-)$1	309	122	129	13.5806
cgggggc	chr20:5591209-5591540(-)$1	331	73	80	12.9354
UGGUGGC	chrX:70767482-70767738(+)$1	256	58	65	12.6935
UGGGAGC	chr21:44527306-44527608(-)$1	302	53	60	13.5806
UGAGGGC	chr6:32940644-32940939(+)$1	295	1	8	12.3709
UGGGAGC	chr17:62501631-62501936(-)$1	305	117	124	13.5806
UGGGGGC	chr6:43745707-43745956(+)$1	249	8	15	17.0483
UGGGGGA	chr6:43745896-43746139(+)$1	243	118	125	13.2580
UGGGGUC	chr1:1256077-1256365(-)$1	288	163	170	12.6935
UGGGGGC	chr19:49122183-49122425(-)$1	242	165	172	17.0483
UCGGGGC	chr21:40720479-40720712(-)$1	233	139	146	12.6129
UGGGGGC	chr19:2270607-2270815(+)$1	208	128	135	17.0483
UGGGGGC	chr20:42087426-42087677(+)$1	251	157	164	17.0483
cgggggc	chr4:174254766-174255105(-)$1	339	117	124	12.9354

#otherMatches

#Struct PSSM
ee]a666	chr6:43745783-43746080(+)$1	297	231	238	13.2580
b[bb!!e	chr4:26859307-26859598(+)$1	291	71	78	12.6935
KKBB{BB	chr16:88725044-88725303(-)$1	259	79	86	17.0483
ggggg##	chr7:5569356-5569623(-)$1	267	125	132	12.6935
ff:::gg	chr10:70097697-70097963(+)$1	266	97	104	13.3387
va22===	chrX:41193692-41193942(+)$1	250	181	188	13.0967
bb77777	chrX:70586272-70586623(+)$1	351	87	94	13.3387
ffffff]	chr6:43746033-43746273(+)$1	240	71	78	13.1774
:::::EE	chr17:73775409-73775671(-)$1	262	2	9	13.5806
xxxxxxx	chr3:100428670-100428988(+)$1	318	98	105	13.0967
ff[iiii	chr1:245026262-245026521(-)$1	259	22	29	12.6935
:a[dddd	chr7:5569522-5569794(-)$1	272	9	16	13.2580
ggggg""	chr3:47894658-47894935(-)$1	277	2	9	17.0483
ee!!ddd	chr1:151373306-151373598(+)$1	292	153	160	17.0483
geeeee!	chr7:6066100-6066390(-)$1	290	152	159	12.6935
b[ccc[a	chr19:2270024-2270227(+)$1	203	9	16	13.2580
}EEEEE~	chr16:88799126-88799366(-)$1	240	176	183	12.6935
lleeeee	chr19:11200287-11200582(+)$1	295	49	56	12.7741
ggglllg	chr17:62501999-62502240(-)$1	241	54	61	13.5806
=======	chr2:38977641-38977917(-)$1	276	44	51	12.6129
FFFFFF:	chr12:123994627-123995021(-)$1	394	335	342	12.7741
::a[fff	chr2:178077543-178077800(+)$1	257	99	106	17.0483
22bb]dd	chr16:2818320-2818551(+)$1	231	51	58	12.6129
A{DDDDK	chr11:126137840-126138086(-)$1	246	3	10	13.2580
FFFFF:b	chr22:50037922-50038173(-)$1	251	146	153	13.1774
dgggggg	chr2:97559889-97560189(-)$1	300	159	166	13.2580
ffffff[	chr17:62501566-62501822(-)$1	256	3	10	13.5806
FZZZDDD	chr11:72414344-72414560(-)$1	216	143	150	12.6935
BLLLCCC	chr2:131968769-131969054(+)$1	285	2	9	12.9354
####eee	chr4:100870965-100871245(-)$1	280	133	140	17.0483
:a[eeee	chr1:220383868-220384128(-)$1	260	106	113	13.3387
ee[dddd	chr22:50032850-50033118(-)$1	268	78	85	12.6935
eeeee##	chr6:43745469-43745712(+)$1	243	70	77	12.6935
C}BBFFF	chr6:43738480-43738702(+)$1	222	96	103	12.6129
FF}CCC}	chr17:74732714-74732970(-)$1	256	179	186	12.4516
:eeeee[	chr7:100479927-100480179(+)$1	252	195	202	12.6935
!!ccc[a	chr5:154136430-154136705(+)$1	275	196	203	13.3387
HHHHH::	chr17:46053121-46053361(+)$1	240	16	23	17.0483
egggggg	chr15:91455423-91455695(+)$1	272	140	147	12.6935
======[	chr17:80050092-80050317(-)$1	225	4	11	13.3387
bb]gggg	chr10:71929890-71930169(-)$1	279	32	39	12.6935
cdddd]d	chr7:5569695-5569970(-)$1	275	116	123	13.2580
fffa[bb	chr1:245026385-245026641(-)$1	256	84	91	12.4516
e22bb]b	chr11:568100-568380(-)$1	280	88	95	12.9354
gggg:gg	chrX:12994441-12994697(+)$1	256	77	84	13.5806
d[hhhhh	chr19:18682642-18682916(+)$1	274	101	108	17.0483
[dddd[e	chr17:79894570-79894827(-)$1	257	105	112	17.0483
DDDD{BB	chr20:42087583-42087826(+)$1	243	0	7	17.0483
00000bb	chr17:26940991-26941300(-)$1	309	122	129	13.5806
abb[ccc	chr20:5591209-5591540(-)$1	331	73	80	12.9354
gg:::cc	chrX:70767482-70767738(+)$1	256	58	65	12.6935
ccc!!dd	chr21:44527306-44527608(-)$1	302	53	60	13.5806
:::::ee	chr6:32940644-32940939(+)$1	295	1	8	12.3709
{CCCHHH	chr17:62501631-62501936(-)$1	305	117	124	13.5806
:::::==	chr6:43745707-43745956(+)$1	249	8	15	17.0483
ee]ccc]	chr6:43745896-43746139(+)$1	243	118	125	13.2580
[ccclll	chr1:1256077-1256365(-)$1	288	163	170	12.6935
CCYYGGG	chr19:49122183-49122425(-)$1	242	165	172	17.0483
}FFFFFF	chr21:40720479-40720712(-)$1	233	139	146	12.6129
$$$$$bb	chr19:2270607-2270815(+)$1	208	128	135	17.0483
lccc22c	chr20:42087426-42087677(+)$1	251	157	164	17.0483
fff!!bb	chr4:174254766-174255105(-)$1	339	117	124	12.9354

#DB
)).)...	chr6:43745783-43746080(+)$1	1	231	238	13.2580
(.((..(	chr4:26859307-26859598(+)$1	1	71	78	12.6935
..((.((	chr16:88725044-88725303(-)$1	1	79	86	17.0483
(((((..	chr7:5569356-5569623(-)$1	1	125	132	12.6935
))...((	chr10:70097697-70097963(+)$1	1	97	104	13.3387
.)..)))	chrX:41193692-41193942(+)$1	1	181	188	13.0967
)).....	chrX:70586272-70586623(+)$1	1	87	94	13.3387
)))))).	chr6:43746033-43746273(+)$1	1	71	78	13.1774
.....((	chr17:73775409-73775671(-)$1	1	2	9	13.5806
.......	chr3:100428670-100428988(+)$1	1	98	105	13.0967
((.((((	chr1:245026262-245026521(-)$1	1	22	29	12.6935
.(.((((	chr7:5569522-5569794(-)$1	1	9	16	13.2580
(((((..	chr3:47894658-47894935(-)$1	1	2	9	17.0483
((..(((	chr1:151373306-151373598(+)$1	1	153	160	17.0483
)(((((.	chr7:6066100-6066390(-)$1	1	152	159	12.6935
(.(((.(	chr19:2270024-2270227(+)$1	1	9	16	13.2580
.))))).	chr16:88799126-88799366(-)$1	1	176	183	12.6935
..)))))	chr19:11200287-11200582(+)$1	1	49	56	12.7741
(((...)	chr17:62501999-62502240(-)$1	1	54	61	13.5806
)))))))	chr2:38977641-38977917(-)$1	1	44	51	12.6129
)))))).	chr12:123994627-123995021(-)$1	1	335	342	12.7741
..(.(((	chr2:178077543-178077800(+)$1	1	99	106	17.0483
..)).))	chr16:2818320-2818551(+)$1	1	51	58	12.6129
(.((((.	chr11:126137840-126138086(-)$1	1	3	10	13.2580
))))).(	chr22:50037922-50038173(-)$1	1	146	153	13.1774
(((((((	chr2:97559889-97560189(-)$1	1	159	166	13.2580
((((((.	chr17:62501566-62501822(-)$1	1	3	10	13.5806
)...)))	chr11:72414344-72414560(-)$1	1	143	150	12.6935
(...(((	chr2:131968769-131969054(+)$1	1	2	9	12.9354
....(((	chr4:100870965-100871245(-)$1	1	133	140	17.0483
.(.((((	chr1:220383868-220384128(-)$1	1	106	113	13.3387
((.((((	chr22:50032850-50033118(-)$1	1	78	85	12.6935
(((((..	chr6:43745469-43745712(+)$1	1	70	77	12.6935
).))(((	chr6:43738480-43738702(+)$1	1	96	103	12.6129
)).))).	chr17:74732714-74732970(-)$1	1	179	186	12.4516
.(((((.	chr7:100479927-100480179(+)$1	1	195	202	12.6935
..(((.(	chr5:154136430-154136705(+)$1	1	196	203	13.3387
(((((..	chr17:46053121-46053361(+)$1	1	16	23	17.0483
)((((((	chr15:91455423-91455695(+)$1	1	140	147	12.6935
((((((.	chr17:80050092-80050317(-)$1	1	4	11	13.3387
)).))))	chr10:71929890-71930169(-)$1	1	32	39	12.6935
))))).)	chr7:5569695-5569970(-)$1	1	116	123	13.2580
)))(.((	chr1:245026385-245026641(-)$1	1	84	91	12.4516
)..)).)	chr11:568100-568380(-)$1	1	88	95	12.9354
)))).((	chrX:12994441-12994697(+)$1	1	77	84	13.5806
(.(((((	chr19:18682642-18682916(+)$1	1	101	108	17.0483
.((((.(	chr17:79894570-79894827(-)$1	1	105	112	17.0483
((((.((	chr20:42087583-42087826(+)$1	1	0	7	17.0483
.....))	chr17:26940991-26941300(-)$1	1	122	129	13.5806
(((.(((	chr20:5591209-5591540(-)$1	1	73	80	12.9354
))...((	chrX:70767482-70767738(+)$1	1	58	65	12.6935
(((..((	chr21:44527306-44527608(-)$1	1	53	60	13.5806
.....((	chr6:32940644-32940939(+)$1	1	1	8	12.3709
.((((((	chr17:62501631-62501936(-)$1	1	117	124	13.5806
.....((	chr6:43745707-43745956(+)$1	1	8	15	17.0483
)).))).	chr6:43745896-43746139(+)$1	1	118	125	13.2580
.(((...	chr1:1256077-1256365(-)$1	1	163	170	12.6935
))..)))	chr19:49122183-49122425(-)$1	1	165	172	17.0483
.))))))	chr21:40720479-40720712(-)$1	1	139	146	12.6129
.....((	chr19:2270607-2270815(+)$1	1	128	135	17.0483
.)))..)	chr20:42087426-42087677(+)$1	1	157	164	17.0483
(((..((	chr4:174254766-174255105(-)$1	1	117	124	12.9354

#PSSM
U : 0.85	G : 0.03	C : 0.03	u : 0.03	c : 0.03	A : 0.01	
G : 0.85	g : 0.06	U : 0.04	C : 0.03	
G : 0.88	g : 0.06	C : 0.03	A : 0.01	
G : 0.83	g : 0.06	C : 0.03	A : 0.03	U : 0.03	
G : 0.74	A : 0.11	g : 0.06	C : 0.04	U : 0.03	
G : 0.85	g : 0.06	U : 0.04	A : 0.03	
C : 0.77	A : 0.06	U : 0.06	c : 0.04	G : 0.03	u : 0.01	

#score	858.7741935483862
#seq	62
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_UTR_m2_run1.nuc.txt

#NT
UUUGACUUUUCUUU	chr1:1328022-1328255(-)$1	233	37	51	20.2291
UUUUUUUUUUGUCU	chr14:69846801-69847066(-)$1	265	241	255	21.4791
UUUUAUUGUUACUU	chr2:47387316-47387559(-)$1	243	132	146	21.8958
UUUUAUUUUUGUUU	chr12:76423169-76423417(-)$1	248	84	98	29.1875
UUUUAUUUUUGUUU	chr6:132269571-132269784(-)$1	213	54	68	29.1875
UUAUAUUUUGUUUU	chr22:38202317-38202546(+)$1	229	39	53	20.3333
UUUUAUUUUUAUUU	chr13:113977467-113977726(+)$1	259	88	102	29.7083
UUUUAUUACUGUUU	chr3:10192214-10192460(+)$1	246	147	161	21.0625
UAUUUUUUUUCUUU	chr1:182352222-182352455(-)$1	233	203	217	21.8958
CAUUCUUUUUGUUU	chrX:48434013-48434271(+)$1	258	92	106	18.5625
UUUUAUUUUCUUCU	chr1:110564278-110564523(+)$1	245	91	105	20.0208
uuuuauuuuuuauu	chr18:25531045-25531297(-)$1	252	82	96	25.4375
UUUUGUCUUUCUUU	chr9:108151984-108152249(+)$1	265	79	93	20.7500
UUUUAUGUUUAUUA	chr6:119500689-119500925(-)$1	236	74	88	21.3750
UUUUAUUUUUAGUG	chr3:156869370-156869628(-)$1	258	236	250	21.6875
AUUUAUUCUUCUUU	chr2:21224416-21224639(-)$1	223	57	71	20.6458
UUGUAUCUUUCUUU	chr5:42800114-42800369(-)$1	255	127	141	19.7083
UUUUAUUUUGUUUU	chr7:5566803-5567039(-)$1	236	84	98	24.7083
UUUUCUGUUUAAUU	chr7:94296431-94296697(+)$1	266	88	102	18.5625
UUUUGUUUUGUUUU	chr17:76989378-76989649(-)$1	271	83	97	21.2708
uuuuuuuuuuauuu	chr7:6502433-6502675(-)$1	242	221	235	26.4791
CUUUAAUUUUACUU	chr6:119500112-119500328(-)$1	216	22	36	18.3541
AUUUAUUUGUGUUU	chr6:142767101-142767343(+)$1	242	18	32	21.7916
UGUCAUUUUUGUUU	chr1:62146713-62146992(-)$1	279	232	246	21.0625
AUUUAUUCUUCUUU	chr2:21224462-21224673(-)$1	211	91	105	20.6458
UUUUAGUUUUAGUU	chr3:195777111-195777350(-)$1	239	95	109	21.7916
UAAUUUUUUUAUUU	chr3:133307565-133307911(+)$1	346	90	104	18.6666
UUUUAUUUUUCCUU	chr3:129369305-129369569(-)$1	264	130	144	24.9166
UCCUGUUUUUAUUU	chr3:5026446-5026689(+)$1	243	101	115	18.2500
UCUUAUUUUUAAUA	chr22:38203287-38203497(+)$1	210	10	24	18.7708
AUUUAUUUGUGUUU	chr6:142767035-142767301(+)$1	266	84	98	21.7916
UAUUAUUGUUGUUU	chr8:22279002-22279220(+)$1	218	77	91	21.5833
UUUUAUUACUAUUU	chr21:34930138-34930416(+)$1	278	121	135	21.5833
UUUUCUUUGUAUAU	chr14:31569253-31569504(-)$1	251	79	93	18.1458
UUUUAUUUUUGUUU	chr6:132269584-132269803(-)$1	219	73	87	29.1875
UCUGAUUUUUAUUU	chr2:65496380-65496615(+)$1	235	90	104	21.8958
UUUUCUUUGUUUUU	chr5:133291426-133291691(-)$1	265	97	111	21.8958
UUUUAAUUGUUUUU	chr2:74382212-74382466(-)$1	254	7	21	21.3750
GAUUAUUUUAAUUU	chr4:187509258-187509478(-)$1	220	36	50	17.8333
UUUAACUUUUAUUU	chr13:113541234-113541530(+)$1	296	106	120	21.2708
uuuuauuuuuaaua	chr17:53469935-53470188(-)$1	253	84	98	22.3125
UUUCAUUUUUGUUU	chr14:53108930-53109191(-)$1	261	221	235	24.9166
UCUUAUUUUUAAUA	chr22:38203240-38203455(+)$1	215	57	71	18.7708
UUUUAAUUAUUUUU	chr10:54076720-54076969(+)$1	249	90	104	20.9583
UUUUAUUUUUGUUU	chr6:132269565-132269771(-)$1	206	41	55	29.1875
uuuuuuuuuuuuuu	chr3:50098915-50099160(+)$1	245	85	99	25.6458
uuuuauuuuuuuuc	chr1:32636750-32637029(+)$1	279	82	96	24.6041

#otherMatches

#Struct PSSM
iiiiiii:::::::	chr2:196600441-196600693(+)$1	252	71	85	21.4791
yyyyyyyyyyyhhh	chr1:1328022-1328255(-)$1	233	37	51	20.2291
@@@@@@@@@@@@@@	chr14:69846801-69847066(-)$1	265	241	255	21.4791
:::::::::FFFFF	chr2:47387316-47387559(-)$1	243	132	146	21.8958
iiiiii!!ccceee	chr12:76423169-76423417(-)$1	248	84	98	29.1875
dddd++++++++++	chr6:132269571-132269784(-)$1	213	54	68	29.1875
mmggggggg:hhhh	chr22:38202317-38202546(+)$1	229	39	53	20.3333
iiiiii]dddd555	chr13:113977467-113977726(+)$1	259	88	102	29.7083
==dddd[eeeee((	chr3:10192214-10192460(+)$1	246	147	161	21.0625
H:::::::ffffff	chr1:182352222-182352455(-)$1	233	203	217	21.8958
MMDDDD{FFFFFF{	chrX:48434013-48434271(+)$1	258	92	106	18.5625
xxxxxxxxxxxeee	chr1:110564278-110564523(+)$1	245	91	105	20.0208
HHHH:FFFFFF{JJ	chr18:25531045-25531297(-)$1	252	82	96	25.4375
HHHHHHHHFFFFFF	chr9:108151984-108152249(+)$1	265	79	93	20.7500
:ffffffqqqqqqq	chr6:119500689-119500925(-)$1	236	74	88	21.3750
qqqqqqqffffffG	chr3:156869370-156869628(-)$1	258	236	250	21.6875
wwwwwwwwgggggg	chr2:21224416-21224639(-)$1	223	57	71	20.6458
::::::::::::::	chr5:42800114-42800369(-)$1	255	127	141	19.7083
:::::::ffffffo	chr7:5566803-5567039(-)$1	236	84	98	24.7083
UUUUHHHHHHHHKK	chr7:94296431-94296697(+)$1	266	88	102	18.5625
=========:::::	chr17:76989378-76989649(-)$1	271	83	97	21.2708
::::::::::::::	chr7:6502433-6502675(-)$1	242	221	235	26.4791
nnnbb22eeeee::	chr6:119500112-119500328(-)$1	216	22	36	18.3541
MMFFFFFF{GGGGG	chr6:142767101-142767343(+)$1	242	18	32	21.7916
::::==========	chr1:62146713-62146992(-)$1	279	232	246	21.0625
wwwwwwwwgggggg	chr2:21224462-21224673(-)$1	211	91	105	20.6458
ttccc55555eeee	chr3:195777111-195777350(-)$1	239	95	109	21.7916
555===========	chr3:133307565-133307911(+)$1	346	90	104	18.6666
iiiiiiiiiooooo	chr3:129369305-129369569(-)$1	264	130	144	24.9166
vvvvccc22ccc]f	chr3:5026446-5026689(+)$1	243	101	115	18.2500
FFFKKGGGGGGGPP	chr22:38203287-38203497(+)$1	210	10	24	18.7708
IIIIIII{GGGGGG	chr6:142767035-142767301(+)$1	266	84	98	21.7916
:::::::cccpppp	chr8:22279002-22279220(+)$1	218	77	91	21.5833
::::::::::::::	chr21:34930138-34930416(+)$1	278	121	135	21.5833
d22ggggggg::::	chr14:31569253-31569504(-)$1	251	79	93	18.1458
:::::::hhhhhhh	chr6:132269584-132269803(-)$1	219	73	87	29.1875
pbb]ccc]hhhhhh	chr2:65496380-65496615(+)$1	235	90	104	21.8958
HHHHHHOOOOOODD	chr5:133291426-133291691(-)$1	265	97	111	21.8958
::::::::======	chr2:74382212-74382466(-)$1	254	7	21	21.3750
bb!!bbmmmmbb22	chr4:187509258-187509478(-)$1	220	36	50	17.8333
lllccc>>>>>>>>	chr13:113541234-113541530(+)$1	296	106	120	21.2708
f"""ggggggg[ee	chr17:53469935-53470188(-)$1	253	84	98	22.3125
FF::::::::::::	chr14:53108930-53109191(-)$1	261	221	235	24.9166
iiiiiffffffooo	chr22:38203240-38203455(+)$1	215	57	71	18.7708
ldddd22eeeee66	chr10:54076720-54076969(+)$1	249	90	104	20.9583
dddd++++++++++	chr6:132269565-132269771(-)$1	206	41	55	29.1875
^^^^^^^^^^^^^^	chr3:50098915-50099160(+)$1	245	85	99	25.6458
^^ggggggg22hhh	chr1:32636750-32637029(+)$1	279	82	96	24.6041

#DB
))))))).......	chr2:196600441-196600693(+)$1	1	71	85	21.4791
...........)))	chr1:1328022-1328255(-)$1	1	37	51	20.2291
..............	chr14:69846801-69847066(-)$1	1	241	255	21.4791
.........)))))	chr2:47387316-47387559(-)$1	1	132	146	21.8958
((((((..((((((	chr12:76423169-76423417(-)$1	1	84	98	29.1875
((((..........	chr6:132269571-132269784(-)$1	1	54	68	29.1875
..))))))).((((	chr22:38202317-38202546(+)$1	1	39	53	20.3333
)))))).))))...	chr13:113977467-113977726(+)$1	1	88	102	29.7083
((((((.(((((..	chr3:10192214-10192460(+)$1	1	147	161	21.0625
).......((((((	chr1:182352222-182352455(-)$1	1	203	217	21.8958
..((((.((((((.	chrX:48434013-48434271(+)$1	1	92	106	18.5625
...........)))	chr1:110564278-110564523(+)$1	1	91	105	20.0208
((((.((((((.((	chr18:25531045-25531297(-)$1	1	82	96	25.4375
((((((((((((((	chr9:108151984-108152249(+)$1	1	79	93	20.7500
.((((((.......	chr6:119500689-119500925(-)$1	1	74	88	21.3750
.......)))))))	chr3:156869370-156869628(-)$1	1	236	250	21.6875
........))))))	chr2:21224416-21224639(-)$1	1	57	71	20.6458
..............	chr5:42800114-42800369(-)$1	1	127	141	19.7083
.......((((((.	chr7:5566803-5567039(-)$1	1	84	98	24.7083
....((((((((..	chr7:94296431-94296697(+)$1	1	88	102	18.5625
))))))))).....	chr17:76989378-76989649(-)$1	1	83	97	21.2708
..............	chr7:6502433-6502675(-)$1	1	221	235	26.4791
...))..)))))..	chr6:119500112-119500328(-)$1	1	22	36	18.3541
..((((((.(((((	chr6:142767101-142767343(+)$1	1	18	32	21.7916
....((((((((((	chr1:62146713-62146992(-)$1	1	232	246	21.0625
........))))))	chr2:21224462-21224673(-)$1	1	91	105	20.6458
..))).....))))	chr3:195777111-195777350(-)$1	1	95	109	21.7916
...)))))))))))	chr3:133307565-133307911(+)$1	1	90	104	18.6666
(((((((((.....	chr3:129369305-129369569(-)$1	1	130	144	24.9166
....)))..))).)	chr3:5026446-5026689(+)$1	1	101	115	18.2500
(((..(((((((..	chr22:38203287-38203497(+)$1	1	10	24	18.7708
(((((((.((((((	chr6:142767035-142767301(+)$1	1	84	98	21.7916
.......(((....	chr8:22279002-22279220(+)$1	1	77	91	21.5833
..............	chr21:34930138-34930416(+)$1	1	121	135	21.5833
)..)))))))....	chr14:31569253-31569504(-)$1	1	79	93	18.1458
.......(((((((	chr6:132269584-132269803(-)$1	1	73	87	29.1875
.)).))).))))))	chr2:65496380-65496615(+)$1	1	90	104	21.8958
((((((......((	chr5:133291426-133291691(-)$1	1	97	111	21.8958
........((((((	chr2:74382212-74382466(-)$1	1	7	21	21.3750
((..((....))..	chr4:187509258-187509478(-)$1	1	36	50	17.8333
...)))........	chr13:113541234-113541530(+)$1	1	106	120	21.2708
(...(((((((.((	chr17:53469935-53470188(-)$1	1	84	98	22.3125
))............	chr14:53108930-53109191(-)$1	1	221	235	24.9166
)))))((((((...	chr22:38203240-38203455(+)$1	1	57	71	18.7708
.))))..)))))..	chr10:54076720-54076969(+)$1	1	90	104	20.9583
((((..........	chr6:132269565-132269771(-)$1	1	41	55	29.1875
..............	chr3:50098915-50099160(+)$1	1	85	99	25.6458
..)))))))..)))	chr1:32636750-32637029(+)$1	1	82	96	24.6041

#PSSM
U : 0.72	u : 0.10	A : 0.08	C : 0.04	c : 0.02	G : 0.02	
U : 0.66	u : 0.12	A : 0.10	C : 0.08	G : 0.02	
U : 0.79	u : 0.12	A : 0.04	G : 0.02	C : 0.02	
U : 0.77	u : 0.12	G : 0.04	C : 0.04	A : 0.02	
A : 0.66	a : 0.08	C : 0.08	U : 0.06	G : 0.06	u : 0.04	
U : 0.75	u : 0.10	A : 0.06	C : 0.04	a : 0.02	G : 0.02	
U : 0.79	u : 0.12	C : 0.04	G : 0.04	
U : 0.75	u : 0.12	G : 0.04	A : 0.04	C : 0.04	
U : 0.70	u : 0.12	G : 0.10	C : 0.04	A : 0.02	
U : 0.77	u : 0.12	G : 0.06	C : 0.02	A : 0.02	
A : 0.33	G : 0.25	C : 0.14	U : 0.14	u : 0.06	a : 0.04	g : 0.02	
U : 0.70	u : 0.08	C : 0.06	A : 0.06	a : 0.04	G : 0.04	
U : 0.81	u : 0.12	C : 0.04	A : 0.02	
U : 0.79	u : 0.08	A : 0.06	G : 0.02	a : 0.02	c : 0.02	

#score	1062.8750000000002
#seq	48
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_CDS_m1_run1.nuc.txt

#NT
AUUCUU	chr1:33145213-33145461(+)$1	248	3	9	11.4821
AUUUUU	chr2:150432850-150433078(-)$1	228	164	170	14.9642
AUUUCU	chr6:26204969-26205177(+)$1	208	41	47	11.2142
AUUAUU	chr8:82626999-82627231(-)$1	232	186	192	11.2142
AUUUUU	chr16:18799295-18799559(-)$1	264	213	219	14.9642
AUUUUU	chr11:118889401-118889674(+)$1	273	110	116	14.9642
AUUUUU	chr12:49666902-49667156(+)$1	254	152	158	14.9642
AUUUUA	chr5:54720474-54720717(+)$1	243	147	153	11.2142
AUUUUG	chr17:7476049-7476285(+)$1	236	168	174	11.3928
AUUUUU	chrX:153627800-153628035(+)$1	235	41	47	14.9642
AGUUUU	chr15:76578656-76578908(-)$1	252	35	41	10.5000
AUUUUG	chr17:37006514-37006721(-)$1	207	56	62	11.3928
AUUUUU	chr11:77330550-77330784(-)$1	234	30	36	14.9642
AUUUUU	chr6:75947530-75947787(-)$1	257	75	81	14.9642
AUUGUU	chr15:66795695-66795947(-)$1	252	7	13	11.1250
AUUUUA	chr21:47931247-47931552(+)$1	305	55	61	11.2142
AUUUUG	chr7:23165315-23165608(+)$1	293	23	29	11.3928
AUUUGU	chr3:101404610-101404866(-)$1	256	80	86	11.1250
AUUCUU	chr7:42962823-42963087(-)$1	264	20	26	11.4821
AUUAUU	chr12:98994865-98995090(+)$1	225	19	25	11.2142
AUUCUU	chr5:68660639-68660896(-)$1	257	1	7	11.4821
AUUUUU	chr3:197677736-197677950(+)$1	214	138	144	14.9642
AUUUUU	chrX:71495298-71495517(-)$1	219	195	201	14.9642
AUUUUU	chr12:120637127-120637353(-)$1	226	10	16	14.9642
AUUUAU	chr14:23495185-23495423(-)$1	238	206	212	11.1250
AUUUUU	chr12:21794862-21795128(-)$1	266	61	67	14.9642
AUUUUU	chr3:186502278-186502530(+)$1	252	56	62	14.9642
AUUAUU	chr9:134003743-134003970(+)$1	227	88	94	11.2142
AUUUUG	chr2:63816032-63816281(+)$1	249	106	112	11.3928
AUUUUG	chr5:85915101-85915380(+)$1	279	2	8	11.3928
AUUUGU	chr3:150262053-150262350(-)$1	297	0	6	11.1250
AUUUUA	chr7:12383721-12383969(-)$1	248	42	48	11.2142
AUUUGU	chr1:155260319-155260569(-)$1	250	76	82	11.1250
AUUUUU	chr10:85910365-85910599(+)$1	234	13	19	14.9642
AUUCUU	chr15:66794980-66795188(-)$1	208	25	31	11.4821
AUUUCU	chr2:73466747-73467013(+)$1	266	6	12	11.2142
AUUUUU	chr12:49522538-49522757(-)$1	219	16	22	14.9642
AUUUUU	chr1:26231061-26231313(-)$1	252	15	21	14.9642
AUUCUU	chr20:60963264-60963519(+)$1	255	69	75	11.4821
AUUUUU	chr11:32617413-32617662(+)$1	249	107	113	14.9642
AUUUUU	chr4:39456145-39456369(-)$1	224	149	155	14.9642
AUUUUU	chr15:69747685-69747910(+)$1	225	21	27	14.9642
AUUUCU	chr14:50052633-50052868(-)$1	235	61	67	11.2142
AUUUUU	chr4:39456424-39456664(-)$1	240	52	58	14.9642
AUUCUU	chr15:64380801-64381063(-)$1	262	4	10	11.4821
AUUUUU	chr18:47016820-47017022(-)$1	202	150	156	14.9642
AUUGUU	chr4:109543248-109543460(+)$1	212	34	40	11.1250
AUUUUA	chr12:54677499-54677720(+)$1	221	15	21	11.2142
AUUUUU	chr15:66794105-66794312(-)$1	207	1	7	14.9642
AUUUUG	chr6:160201870-160202109(-)$1	239	65	71	11.3928
AUUUAU	chr4:109576638-109576867(+)$1	229	86	92	11.1250
AGUUUU	chr19:59060869-59061119(+)$1	250	96	102	10.5000
auuuuu	chr15:66794849-66795065(-)$1	216	185	191	14.9642
AUUUCU	chr2:62105905-62106133(-)$1	228	4	10	11.2142
AGUUUU	chr12:57106185-57106437(-)$1	252	34	40	10.5000

#otherMatches

#Struct PSSM
::::ff	chr15:66795595-66795810(-)$1	215	121	127	11.1250
:fffff	chr1:33145213-33145461(+)$1	248	3	9	11.4821
iiiiii	chr2:150432850-150433078(-)$1	228	164	170	14.9642
[fffff	chr6:26204969-26205177(+)$1	208	41	47	11.2142
qqqqii	chr8:82626999-82627231(-)$1	232	186	192	11.2142
>>>>>>	chr16:18799295-18799559(-)$1	264	213	219	14.9642
((((((	chr11:118889401-118889674(+)$1	273	110	116	14.9642
dddhhh	chr12:49666902-49667156(+)$1	254	152	158	14.9642
YYHHHH	chr5:54720474-54720717(+)$1	243	147	153	11.2142
]ggggg	chr17:7476049-7476285(+)$1	236	168	174	11.3928
###fff	chrX:153627800-153628035(+)$1	235	41	47	14.9642
CQQQQQ	chr15:76578656-76578908(-)$1	252	35	41	10.5000
flllff	chr17:37006514-37006721(-)$1	207	56	62	11.3928
ffffff	chr11:77330550-77330784(-)$1	234	30	36	14.9642
pppppp	chr6:75947530-75947787(-)$1	257	75	81	14.9642
:hhhhh	chr15:66795695-66795947(-)$1	252	7	13	11.1250
g[bb!!	chr21:47931247-47931552(+)$1	305	55	61	11.2142
rrrrrr	chr7:23165315-23165608(+)$1	293	23	29	11.3928
eeeee2	chr3:101404610-101404866(-)$1	256	80	86	11.1250
ggggg[	chr7:42962823-42963087(-)$1	264	20	26	11.4821
h"""bb	chr12:98994865-98995090(+)$1	225	19	25	11.2142
::bb[e	chr5:68660639-68660896(-)$1	257	1	7	11.4821
>>>>>>	chr3:197677736-197677950(+)$1	214	138	144	14.9642
777eee	chrX:71495298-71495517(-)$1	219	195	201	14.9642
QQQQQQ	chr12:120637127-120637353(-)$1	226	10	16	14.9642
>>>>>>	chr14:23495185-23495423(-)$1	238	206	212	11.1250
ssssss	chr12:21794862-21795128(-)$1	266	61	67	14.9642
^^^^^^	chr3:186502278-186502530(+)$1	252	56	62	14.9642
&&&&gg	chr9:134003743-134003970(+)$1	227	88	94	11.2142
eee[bb	chr2:63816032-63816281(+)$1	249	106	112	11.3928
::::FF	chr5:85915101-85915380(+)$1	279	2	8	11.3928
::::EE	chr3:150262053-150262350(-)$1	297	0	6	11.1250
JJDDDD	chr7:12383721-12383969(-)$1	248	42	48	11.2142
mmccc:	chr1:155260319-155260569(-)$1	250	76	82	11.1250
======	chr10:85910365-85910599(+)$1	234	13	19	14.9642
&cccnn	chr15:66794980-66795188(-)$1	208	25	31	11.4821
:::::E	chr2:73466747-73467013(+)$1	266	6	12	11.2142
::::::	chr12:49522538-49522757(-)$1	219	16	22	14.9642
LLLDDD	chr1:26231061-26231313(-)$1	252	15	21	14.9642
%%gggg	chr20:60963264-60963519(+)$1	255	69	75	11.4821
ddddgg	chr11:32617413-32617662(+)$1	249	107	113	14.9642
vvvvvv	chr4:39456145-39456369(-)$1	224	149	155	14.9642
gggggb	chr15:69747685-69747910(+)$1	225	21	27	14.9642
>>>>dd	chr14:50052633-50052868(-)$1	235	61	67	11.2142
hhhhhh	chr4:39456424-39456664(-)$1	240	52	58	14.9642
[ggggg	chr15:64380801-64381063(-)$1	262	4	10	11.4821
uuuuuu	chr18:47016820-47017022(-)$1	202	150	156	14.9642
rrrrre	chr4:109543248-109543460(+)$1	212	34	40	11.1250
:ccc[f	chr12:54677499-54677720(+)$1	221	15	21	11.2142
IIIIII	chr15:66794105-66794312(-)$1	207	1	7	14.9642
JJJJJJ	chr6:160201870-160202109(-)$1	239	65	71	11.3928
:::::g	chr4:109576638-109576867(+)$1	229	86	92	11.1250
5dddd]	chr19:59060869-59061119(+)$1	250	96	102	10.5000
zzzzzz	chr15:66794849-66795065(-)$1	216	185	191	14.9642
:fffff	chr2:62105905-62106133(-)$1	228	4	10	11.2142
EEKKEE	chr12:57106185-57106437(-)$1	252	34	40	10.5000

#DB
....((	chr15:66795595-66795810(-)$1	1	121	127	11.1250
.(((((	chr1:33145213-33145461(+)$1	1	3	9	11.4821
((((((	chr2:150432850-150433078(-)$1	1	164	170	14.9642
.(((((	chr6:26204969-26205177(+)$1	1	41	47	11.2142
....))	chr8:82626999-82627231(-)$1	1	186	192	11.2142
......	chr16:18799295-18799559(-)$1	1	213	219	14.9642
......	chr11:118889401-118889674(+)$1	1	110	116	14.9642
))))))	chr12:49666902-49667156(+)$1	1	152	158	14.9642
..))))	chr5:54720474-54720717(+)$1	1	147	153	11.2142
.)))))	chr17:7476049-7476285(+)$1	1	168	174	11.3928
...(((	chrX:153627800-153628035(+)$1	1	41	47	14.9642
(.....	chr15:76578656-76578908(-)$1	1	35	41	10.5000
(...))	chr17:37006514-37006721(-)$1	1	56	62	11.3928
((((((	chr11:77330550-77330784(-)$1	1	30	36	14.9642
......	chr6:75947530-75947787(-)$1	1	75	81	14.9642
.(((((	chr15:66795695-66795947(-)$1	1	7	13	11.1250
(.((..	chr21:47931247-47931552(+)$1	1	55	61	11.2142
......	chr7:23165315-23165608(+)$1	1	23	29	11.3928
))))).	chr3:101404610-101404866(-)$1	1	80	86	11.1250
(((((.	chr7:42962823-42963087(-)$1	1	20	26	11.4821
(...((	chr12:98994865-98995090(+)$1	1	19	25	11.2142
..((.(	chr5:68660639-68660896(-)$1	1	1	7	11.4821
......	chr3:197677736-197677950(+)$1	1	138	144	14.9642
...)))	chrX:71495298-71495517(-)$1	1	195	201	14.9642
......	chr12:120637127-120637353(-)$1	1	10	16	14.9642
......	chr14:23495185-23495423(-)$1	1	206	212	11.1250
......	chr12:21794862-21795128(-)$1	1	61	67	14.9642
......	chr3:186502278-186502530(+)$1	1	56	62	14.9642
....((	chr9:134003743-134003970(+)$1	1	88	94	11.2142
(((.((	chr2:63816032-63816281(+)$1	1	106	112	11.3928
....((	chr5:85915101-85915380(+)$1	1	2	8	11.3928
....((	chr3:150262053-150262350(-)$1	1	0	6	11.1250
((((((	chr7:12383721-12383969(-)$1	1	42	48	11.2142
..))).	chr1:155260319-155260569(-)$1	1	76	82	11.1250
((((((	chr10:85910365-85910599(+)$1	1	13	19	14.9642
.(((..	chr15:66794980-66795188(-)$1	1	25	31	11.4821
.....(	chr2:73466747-73467013(+)$1	1	6	12	11.2142
......	chr12:49522538-49522757(-)$1	1	16	22	14.9642
...(((	chr1:26231061-26231313(-)$1	1	15	21	14.9642
..((((	chr20:60963264-60963519(+)$1	1	69	75	11.4821
))))))	chr11:32617413-32617662(+)$1	1	107	113	14.9642
......	chr4:39456145-39456369(-)$1	1	149	155	14.9642
))))))	chr15:69747685-69747910(+)$1	1	21	27	14.9642
....))	chr14:50052633-50052868(-)$1	1	61	67	11.2142
((((((	chr4:39456424-39456664(-)$1	1	52	58	14.9642
.(((((	chr15:64380801-64381063(-)$1	1	4	10	11.4821
......	chr18:47016820-47017022(-)$1	1	150	156	14.9642
.....)	chr4:109543248-109543460(+)$1	1	34	40	11.1250
.(((.(	chr12:54677499-54677720(+)$1	1	15	21	11.2142
((((((	chr15:66794105-66794312(-)$1	1	1	7	14.9642
((((((	chr6:160201870-160202109(-)$1	1	65	71	11.3928
.....(	chr4:109576638-109576867(+)$1	1	86	92	11.1250
.)))).	chr19:59060869-59061119(+)$1	1	96	102	10.5000
......	chr15:66794849-66795065(-)$1	1	185	191	14.9642
.(((((	chr2:62105905-62106133(-)$1	1	4	10	11.2142
((..((	chr12:57106185-57106437(-)$1	1	34	40	10.5000

#PSSM
A : 0.98	a : 0.01	
U : 0.92	G : 0.05	u : 0.01	
U : 0.98	u : 0.01	
U : 0.78	C : 0.10	A : 0.05	G : 0.03	u : 0.01	
U : 0.80	C : 0.07	A : 0.05	G : 0.05	u : 0.01	
U : 0.80	G : 0.10	A : 0.07	u : 0.01	

#score	710.3214285714297
#seq	56
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_UTR_m3_run2.nuc.txt

#NT
UGCCUGG	chr19:34868363-34868593(+)$1	230	1	8	13.2413
GGCCGGG	chr2:73479810-73480119(+)$1	309	146	153	13.0689
UGCCUGG	chr10:98346486-98346726(-)$1	240	144	151	13.2413
GCCCUGG	chr3:195791114-195791396(-)$1	282	136	143	13.1551
GGCCUGG	chr20:24973165-24973426(-)$1	261	34	41	16.8620
GGCCUGG	chr19:18682573-18682816(+)$1	243	193	200	16.8620
GGUCUGG	chr6:31901307-31901573(+)$1	266	221	228	12.8965
GUCCUGG	chr12:110779974-110780245(+)$1	271	157	164	13.0689
GGCCUGG	chr19:14640310-14640601(+)$1	291	63	70	16.8620
UGCCUGG	chr16:28986302-28986582(+)$1	280	231	238	13.2413
GGCCGGG	chr3:127771203-127771453(+)$1	250	226	233	13.0689
GGCGUGG	chr1:155231862-155232127(-)$1	265	144	151	12.3793
GACCUGG	chr7:56087236-56087506(-)$1	270	43	50	12.8103
GGCCUGC	chr11:118919768-118920015(-)$1	247	42	49	12.7241
GGCUUGG	chr17:79268699-79268999(-)$1	300	34	41	12.3793
ggccggg	chr2:11484436-11484809(-)$1	373	334	341	13.0689
GCCCUGG	chr1:19211882-19212153(-)$1	271	58	65	13.1551
GGCCUGG	chr15:72492737-72492999(-)$1	262	135	142	16.8620
GGCCUGC	chr3:128902519-128902785(-)$1	266	119	126	12.7241
GGCUUGG	chr3:197677705-197677949(+)$1	244	64	71	12.3793
AGCCUGG	chr17:73132043-73132444(-)$1	401	125	132	13.2413
GGCCUGG	chr11:63742046-63742317(+)$1	271	230	237	16.8620
GGGCUGG	chr14:23237083-23237405(+)$1	322	200	207	12.8965
GGUCUGG	chr6:43100254-43100507(+)$1	253	218	225	12.8965
GGCCUGG	chr19:15227119-15227406(-)$1	287	192	199	16.8620
AGCCUGG	chr3:50396596-50396832(-)$1	236	55	62	13.2413
GGGCUGG	chr14:21167520-21167788(+)$1	268	64	71	12.8965
GCCCUGG	chr6:31912965-31913207(+)$1	242	117	124	13.1551
GUCCUGG	chr12:118582478-118582711(+)$1	233	154	161	13.0689
GGACUGG	chr19:45312279-45312561(+)$1	282	210	217	12.8965
GUCCUGG	chr11:6640326-6640550(-)$1	224	180	187	13.0689
GGCCUGA	chr11:75115110-75115352(+)$1	242	65	72	12.5517
AGCCUGG	chr1:92262910-92263130(-)$1	220	108	115	13.2413
GGCCGGG	chr5:68389935-68390218(+)$1	283	259	266	13.0689
GGUCUGG	chr19:50017381-50017637(+)$1	256	19	26	12.8965
GGCCGGG	chr15:77224040-77224370(+)$1	330	313	320	13.0689
GGCCUGU	chr17:73759370-73759617(-)$1	247	153	160	12.7241
GGCCUGC	chr12:125348166-125348429(-)$1	263	58	65	12.7241
ggccggg	chr20:43976863-43977133(-)$1	270	12	19	13.0689
GGACUGG	chr6:34212506-34212781(+)$1	275	201	208	12.8965
GGCCUGG	chr16:31102472-31102726(-)$1	254	139	146	16.8620
GGCCUGU	chr19:49407502-49407729(+)$1	227	107	114	12.7241
GGCCUGG	chr16:4432814-4433044(+)$1	230	42	49	16.8620
GGCCUGG	chr11:1774710-1774968(-)$1	258	36	43	16.8620
AGCCUGG	chr12:53291026-53291313(-)$1	287	149	156	13.2413
UGCCUGG	chr14:95090085-95090338(+)$1	253	120	127	13.2413
GGACUGG	chr19:49506444-49506693(+)$1	249	111	118	12.8965
GGCCUGG	chr19:8372974-8373304(-)$1	330	181	188	16.8620
GGCGUGG	chr12:71833582-71833898(+)$1	316	75	82	12.3793
GGCCGGG	chr1:32801553-32801799(-)$1	246	86	93	13.0689
GUCCUGG	chr7:99564594-99564845(-)$1	251	111	118	13.0689
GCCCUGG	chr17:5336214-5336449(-)$1	235	49	56	13.1551
GCCCUGG	chrX:153063743-153064015(+)$1	272	54	61	13.1551
CGCCUGG	chr9:35072265-35072501(-)$1	236	51	58	12.8965
GGCCUGU	chr12:58145886-58146185(-)$1	299	99	106	12.7241
UGCCUGG	chrX:153580470-153580705(-)$1	235	49	56	13.2413
AGCCUGG	chr1:55505155-55505457(+)$1	302	122	129	13.2413

#otherMatches

#Struct PSSM
FFYYCCC	chr17:80193757-80193973(+)$1	216	186	193	12.8965
eeeebb!	chr19:34868363-34868593(+)$1	230	1	8	13.2413
eeeee[c	chr2:73479810-73480119(+)$1	309	146	153	13.0689
====!!e	chr10:98346486-98346726(-)$1	240	144	151	13.2413
ggggg22	chr3:195791114-195791396(-)$1	282	136	143	13.1551
GGGGGGG	chr20:24973165-24973426(-)$1	261	34	41	16.8620
sssssss	chr19:18682573-18682816(+)$1	243	193	200	16.8620
c[ddddq	chr6:31901307-31901573(+)$1	266	221	228	12.8965
g"""===	chr12:110779974-110780245(+)$1	271	157	164	13.0689
dffffff	chr19:14640310-14640601(+)$1	291	63	70	16.8620
hhhhhhh	chr16:28986302-28986582(+)$1	280	231	238	13.2413
GGGGGGG	chr3:127771203-127771453(+)$1	250	226	233	13.0689
cccA}GG	chr1:155231862-155232127(-)$1	265	144	151	12.3793
d333ddd	chr7:56087236-56087506(-)$1	270	43	50	12.8103
LFFFFFF	chr11:118919768-118920015(-)$1	247	42	49	12.7241
DDD:::f	chr17:79268699-79268999(-)$1	300	34	41	12.3793
dddd[dd	chr2:11484436-11484809(-)$1	373	334	341	13.0689
FFFFFFB	chr1:19211882-19212153(-)$1	271	58	65	13.1551
lliiiii	chr15:72492737-72492999(-)$1	262	135	142	16.8620
!ccc[bb	chr3:128902519-128902785(-)$1	266	119	126	12.7241
]dddd]c	chr3:197677705-197677949(+)$1	244	64	71	12.3793
FFF{HHH	chr17:73132043-73132444(-)$1	401	125	132	13.2413
HHHHHHZ	chr11:63742046-63742317(+)$1	271	230	237	16.8620
ggg[bbq	chr14:23237083-23237405(+)$1	322	200	207	12.8965
YCCCFFF	chr6:43100254-43100507(+)$1	253	218	225	12.8965
EEZZZCC	chr19:15227119-15227406(-)$1	287	192	199	16.8620
mmeeeee	chr3:50396596-50396832(-)$1	236	55	62	13.2413
mmbb]cc	chr14:21167520-21167788(+)$1	268	64	71	12.8965
DKKEEEE	chr6:31912965-31913207(+)$1	242	117	124	13.1551
uuuuuuu	chr12:118582478-118582711(+)$1	233	154	161	13.0689
]a]ffff	chr19:45312279-45312561(+)$1	282	210	217	12.8965
eeeee:E	chr11:6640326-6640550(-)$1	224	180	187	13.0689
DDDD{CC	chr11:75115110-75115352(+)$1	242	65	72	12.5517
EDDDDbb	chr1:92262910-92263130(-)$1	220	108	115	13.2413
JJJJJJJ	chr5:68389935-68390218(+)$1	283	259	266	13.0689
:::::::	chr19:50017381-50017637(+)$1	256	19	26	12.8965
FF}DDDD	chr15:77224040-77224370(+)$1	330	313	320	13.0689
gggcccp	chr17:73759370-73759617(-)$1	247	153	160	12.7241
GGGGGFF	chr12:125348166-125348429(-)$1	263	58	65	12.7241
b[bb[gg	chr20:43976863-43977133(-)$1	270	12	19	13.0689
FFFFFBB	chr6:34212506-34212781(+)$1	275	201	208	12.8965
"""eeee	chr16:31102472-31102726(-)$1	254	139	146	16.8620
99eeeee	chr19:49407502-49407729(+)$1	227	107	114	12.7241
=======	chr16:4432814-4433044(+)$1	230	42	49	16.8620
[gggggg	chr11:1774710-1774968(-)$1	258	36	43	16.8620
]bbeeee	chr12:53291026-53291313(-)$1	287	149	156	13.2413
DD}FFFF	chr14:95090085-95090338(+)$1	253	120	127	13.2413
B::gggg	chr19:49506444-49506693(+)$1	249	111	118	12.8965
eeeee]f	chr19:8372974-8373304(-)$1	330	181	188	16.8620
=======	chr12:71833582-71833898(+)$1	316	75	82	12.3793
eefffff	chr1:32801553-32801799(-)$1	246	86	93	13.0689
~JJJJJJ	chr7:99564594-99564845(-)$1	251	111	118	13.0689
bbeeeee	chr17:5336214-5336449(-)$1	235	49	56	13.1551
hhhhhhh	chrX:153063743-153064015(+)$1	272	54	61	13.1551
PPEEEEE	chr9:35072265-35072501(-)$1	236	51	58	12.8965
ffffffs	chr12:58145886-58146185(-)$1	299	99	106	12.7241
bb[gggg	chrX:153580470-153580705(-)$1	235	49	56	13.2413
fffffff	chr1:55505155-55505457(+)$1	302	122	129	13.2413

#DB
))..)))	chr17:80193757-80193973(+)$1	1	186	193	12.8965
((((((.	chr19:34868363-34868593(+)$1	1	1	8	13.2413
(((((.(	chr2:73479810-73480119(+)$1	1	146	153	13.0689
((((..(	chr10:98346486-98346726(-)$1	1	144	151	13.2413
)))))..	chr3:195791114-195791396(-)$1	1	136	143	13.1551
(((((((	chr20:24973165-24973426(-)$1	1	34	41	16.8620
.......	chr19:18682573-18682816(+)$1	1	193	200	16.8620
(.((((.	chr6:31901307-31901573(+)$1	1	221	228	12.8965
(...(((	chr12:110779974-110780245(+)$1	1	157	164	13.0689
)((((((	chr19:14640310-14640601(+)$1	1	63	70	16.8620
)))))))	chr16:28986302-28986582(+)$1	1	231	238	13.2413
)))))))	chr3:127771203-127771453(+)$1	1	226	233	13.0689
)))).))	chr1:155231862-155232127(-)$1	1	144	151	12.3793
)...)))	chr7:56087236-56087506(-)$1	1	43	50	12.8103
.((((((	chr11:118919768-118920015(-)$1	1	42	49	12.7241
(((...(	chr17:79268699-79268999(-)$1	1	34	41	12.3793
((((.((	chr2:11484436-11484809(-)$1	1	334	341	13.0689
(((((((	chr1:19211882-19212153(-)$1	1	58	65	13.1551
..)))))	chr15:72492737-72492999(-)$1	1	135	142	16.8620
.(((.((	chr3:128902519-128902785(-)$1	1	119	126	12.7241
.)))).)	chr3:197677705-197677949(+)$1	1	64	71	12.3793
(((.(((	chr17:73132043-73132444(-)$1	1	125	132	13.2413
)))))).	chr11:63742046-63742317(+)$1	1	230	237	16.8620
(((.((.	chr14:23237083-23237405(+)$1	1	200	207	12.8965
.))))))	chr6:43100254-43100507(+)$1	1	218	225	12.8965
))...))	chr19:15227119-15227406(-)$1	1	192	199	16.8620
..)))))	chr3:50396596-50396832(-)$1	1	55	62	13.2413
..)).))	chr14:21167520-21167788(+)$1	1	64	71	12.8965
(..((((	chr6:31912965-31913207(+)$1	1	117	124	13.1551
.......	chr12:118582478-118582711(+)$1	1	154	161	13.0689
.).))))	chr19:45312279-45312561(+)$1	1	210	217	12.8965
))))).)	chr11:6640326-6640550(-)$1	1	180	187	13.0689
((((.((	chr11:75115110-75115352(+)$1	1	65	72	12.5517
)))))((	chr1:92262910-92263130(-)$1	1	108	115	13.2413
)))))))	chr5:68389935-68390218(+)$1	1	259	266	13.0689
.......	chr19:50017381-50017637(+)$1	1	19	26	12.8965
)).))))	chr15:77224040-77224370(+)$1	1	313	320	13.0689
)))(((.	chr17:73759370-73759617(-)$1	1	153	160	12.7241
(((((((	chr12:125348166-125348429(-)$1	1	58	65	12.7241
(.((.((	chr20:43976863-43977133(-)$1	1	12	19	13.0689
)))))))	chr6:34212506-34212781(+)$1	1	201	208	12.8965
...((((	chr16:31102472-31102726(-)$1	1	139	146	16.8620
..)))))	chr19:49407502-49407729(+)$1	1	107	114	12.7241
(((((((	chr16:4432814-4433044(+)$1	1	42	49	16.8620
.((((((	chr11:1774710-1774968(-)$1	1	36	43	16.8620
.))))))	chr12:53291026-53291313(-)$1	1	149	156	13.2413
)).))))	chr14:95090085-95090338(+)$1	1	120	127	13.2413
(..((((	chr19:49506444-49506693(+)$1	1	111	118	12.8965
))))).)	chr19:8372974-8373304(-)$1	1	181	188	16.8620
(((((((	chr12:71833582-71833898(+)$1	1	75	82	12.3793
))(((((	chr1:32801553-32801799(-)$1	1	86	93	13.0689
.))))))	chr7:99564594-99564845(-)$1	1	111	118	13.0689
(((((((	chr17:5336214-5336449(-)$1	1	49	56	13.1551
)))))))	chrX:153063743-153064015(+)$1	1	54	61	13.1551
..(((((	chr9:35072265-35072501(-)$1	1	51	58	12.8965
((((((.	chr12:58145886-58146185(-)$1	1	99	106	12.7241
((.((((	chrX:153580470-153580705(-)$1	1	49	56	13.2413
(((((((	chr1:55505155-55505457(+)$1	1	122	129	13.2413

#PSSM
G : 0.77	U : 0.08	A : 0.08	g : 0.03	C : 0.01	
G : 0.79	C : 0.08	U : 0.06	g : 0.03	A : 0.01	
C : 0.81	G : 0.05	U : 0.05	A : 0.05	c : 0.03	
C : 0.89	G : 0.03	U : 0.03	c : 0.03	
U : 0.87	G : 0.08	g : 0.03	
G : 0.96	g : 0.03	
G : 0.84	C : 0.05	U : 0.05	g : 0.03	A : 0.01	

#score	790.7586206896559
#seq	58
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF305BNZ_LARP7_transcript_m2_run1.nuc.txt

#NT
gagggcgaucuggcugugacaucugucaccccauuaauc	chr7:111928580-111928812(+)$1	232	103	142	101.3137
gagggcgaucuggaugcgacaucugucaccacauugauc	chr20:18275956-18276187(-)$1	231	98	137	99.2549
gagggcaaucuggcugcgacaucugucaucccauugauc	chr14:90088161-90088404(+)$1	243	106	145	100.4313
gagggcgaucuggaugcgacaucugucaccacauugauc	chr20:18275987-18276196(-)$1	209	107	146	99.2549
gagggcgaucuggcugcgaaaucugucaccccauugauc	chr5:109035407-109035635(-)$1	228	106	145	103.6666
gagggcgaucuggcugcgacaucugucaccccauugauc	chr16:81995432-81995673(+)$1	241	104	143	108.2745
gagggagaucuggcugcgacaucugucaccccauugauc	chr9:34270772-34271021(-)$1	249	107	146	104.6470
gagggcgaucuggcugcgacauuugucaacccuuugauc	chr4:121982436-121982734(-)$1	298	107	146	94.3529
gagggcgaucuggcugcgacaucugucacgccauugauu	chr4:7114024-7114227(-)$1	203	107	146	101.6078
gagggcgaucuggcugcgacaucugucaccccauugauc	chr14:90178755-90178982(+)$1	227	105	144	108.2745
gagggcgaucuggcugugacaucugucaccccauugauc	chr13:99857864-99858086(+)$1	222	103	142	105.9215
gagggcgaucuggcugcgacaucugucaccccauugauc	chr16:81995428-81995632(+)$1	204	108	147	108.2745
gagggugaucuggcugcgacaucugucaccccauugauc	chr22:42961204-42961437(-)$1	233	107	146	105.6274
gagggcgaucuggcugugacuucuaucaccccauugauc	chr6:132141377-132141672(+)$1	295	102	141	96.3137
gagggcgaucuggcugugacaucugucaccccauuaauc	chr7:111928577-111928780(+)$1	203	106	145	101.3137
gagggugaucuggcugugacaucugucaccccauugauc	chr4:4922643-4922886(-)$1	243	101	140	103.2745
gagggugaucuggcugcgacaucugucaccucauugauu	chr15:47564691-47564906(+)$1	215	108	147	98.9607
gagggcaaucuggcugcgacaucugucaccccauugacc	chr12:14706760-14707006(-)$1	246	108	147	100.0392
gagggcgaucuggcugcgacaucugucacgccauugauu	chr4:7114004-7114224(-)$1	220	104	143	101.6078
gagggcaaucuggcugcggcaucugucaccccauugauc	chr20:11799598-11799841(-)$1	243	108	147	100.0392
gagggcgaucuggcugugacaucugucaccccauugauc	chr13:99857860-99858064(+)$1	204	107	146	105.9215
cagggugaucuggcugugacaucugucacuccauugauc	chr14:50535190-50535451(+)$1	261	100	139	94.0588
gagggcaaucuggcugcgacaucugucaucccauugauu	chr20:41691929-41692164(+)$1	235	42	81	98.1764
gagggugaucuggcugcgacaucugucaccccauugauc	chr6:76364860-76365114(-)$1	254	105	144	105.6274
gagggcgaucuggcugugacaucugucaccccauugauc	chr9:77414730-77414936(+)$1	206	86	125	105.9215
gagggcgaucuggcugcaacaucugucagcccauugauu	chr2:158155403-158155668(-)$1	265	4	43	97.2941
gagggugaucuggcugagacaucugucaccccacugauu	chr3:139303078-139303332(-)$1	254	51	90	95.3333
gagggcaaccuggcugugacaucugucaccccaaugauc	chr1:93491708-93491952(+)$1	244	106	145	93.0784
gagggcgaucuggcugcgacaucugucaccccauugauu	chr5:6848434-6848670(-)$1	236	101	140	106.0196
gagggggaucuggcugcgacaucugucaccccacugauc	chr10:22221971-22222213(+)$1	242	106	145	100.1372
gagggcgaucugacugcgacaucugucaccccauugauc	chr8:129232649-129232899(+)$1	250	106	145	103.5686
gagggcgaucuggcugcgacaucugucaccccauugauc	chr6:52860320-52860561(+)$1	241	103	142	108.2745
gagggugaucuggcugcgacaucugucaccucauugauu	chr15:47564706-47564936(+)$1	230	93	132	98.9607
gaGggcaaucuggcugcgacauuugucaccccauugauc	chr5:143915095-143915334(-)$1	239	107	146	100.2352
gaggacgaucuagcugcgacaucugucaccccauugauc	chr20:33969453-33969711(-)$1	258	107	146	98.6666
gagggcgaucuggcugcaacaucugucaccccauugauc	chr20:17557010-17557255(-)$1	245	106	145	104.0588
gagggcgaucuggcugugacaucugucaccccauugauc	chr9:77414710-77414930(+)$1	220	106	145	105.9215
gagggcgaucugccugcaacaucugucaccccauugauc	chr18:1323965-1324187(-)$1	222	107	146	99.3529
gagggugaucuggcugcgauaucugucaccccauugauu	chr20:37390095-37390312(+)$1	217	81	120	98.8627
gagggcgaucuggcugcgacaucugucaccccauugauu	chr5:6848470-6848676(-)$1	206	107	146	106.0196
gagggcgaucuggcugcgacaucugucaccccauugauc	chr16:81995417-81995628(+)$1	211	119	158	108.2745
gagggugaucuggcugcgauaucugucaccccauugauu	chr20:37390069-37390295(+)$1	226	107	146	98.8627
gagggcgaucuggcugcaacaucugucaccccauugauu	chr11:73543606-73543830(-)$1	224	101	140	101.8039
gagggcaaucuggcugcgacaucugucaccccauugauc	chr11:16863705-16863923(+)$1	218	100	139	104.8431
gagggcgaucuggcugugacaucugucaccccauugauc	chr9:77414736-77414943(+)$1	207	80	119	105.9215
gagggugaucuggcugcgacaucugucaccccauugauc	chr22:42961187-42961400(-)$1	213	70	109	105.6274
gagggcgauccggcugugacaucugucaccccauugauc	chr9:25089000-25089250(-)$1	250	107	146	101.1176
gagggcgaucuggcugcgacaucugucaccccauugauu	chr3:142392334-142392584(+)$1	250	112	151	106.0196
gagggcaaucuggcugugacaucugucacuccauugauu	chr17:70660034-70660285(-)$1	251	0	39	95.8235
gagggugaucuggcugcgacaucugucaccccauugauc	chr22:42961112-42961364(-)$1	252	34	73	105.6274

#otherMatches

#Struct PSSM
::EEEEELLLGGGGGGG=========="""ccc%%%%%%	chr6:52860423-52860626(+)$1	203	0	39	108.2745
CCCffffff[ccc!!eeeeemmmmeeeee]ccc333fff	chr7:111928580-111928812(+)$1	232	103	142	101.3137
GGGGG{BBLLLFFFFFFKKEEEEEdddd!!ffffffnnn	chr20:18275956-18276187(-)$1	231	98	137	99.2549
EEEEEKKEEEEE{BBBB:::::::dddd[cccttttttt	chr14:90088161-90088404(+)$1	243	106	145	100.4313
EEEEE{BBLLLFFFFFFKKEEEEEdddd!!ffffffnnn	chr20:18275987-18276196(-)$1	209	107	146	99.2549
}CCCffffffccc!!a[bboooooobb]a]ccc22ffff	chr5:109035407-109035635(-)$1	228	106	145	103.6666
"""gggggggccc!!a[cccmmmmccc]a]ccc22gggg	chr16:81995432-81995673(+)$1	241	104	143	108.2745
22ccceeeeeccc!!a[cccmmmmccc]a]ccc22eeee	chr9:34270772-34271021(-)$1	249	107	146	104.6470
::DDDD{EEEEE{BBBB:::::::iiiiiiiiirrrrrr	chr4:121982436-121982734(-)$1	298	107	146	94.3529
fffffJJJJJJJJJJJ:==========!!dddd%%%%%%	chr4:7114024-7114227(-)$1	203	107	146	101.6078
ggggg[a####bb!!a[==========[bbccc!!dddd	chr14:90178755-90178982(+)$1	227	105	144	108.2745
qqccc]eeeee22dddd4444ffffff22aadddda22g	chr13:99857864-99858086(+)$1	222	103	142	105.9215
cc]hhhhhhhh::::::GGGGGGGdddd!!ccc!!dddd	chr16:81995428-81995632(+)$1	204	108	147	108.2745
c[ggggggg[bbpppppppbb333gggggggcccBB}EE	chr22:42961204-42961437(-)$1	233	107	146	105.6274
GGGGG:ddddccc!!ddddoooooodddd]ccc22dddd	chr6:132141377-132141672(+)$1	295	102	141	96.3137
:::ffffff[ccc!!eeeeemmmmeeeee]ccc333fff	chr7:111928577-111928780(+)$1	203	106	145	101.3137
ccceeeee"""bb!!a[==========[bbccc!!dddd	chr4:4922643-4922886(-)$1	243	101	140	103.2745
"""cccooooooccc333hhhhhhhh999999999gggg	chr15:47564691-47564906(+)$1	215	108	147	98.9607
HHHHH:::gggggggbb[a[ccc[dddd####ggggggg	chr12:14706760-14707006(-)$1	246	108	147	100.0392
fffffJJJJJJJJJJJ:==========!!dddd%%%%%%	chr4:7114004-7114224(-)$1	220	104	143	101.6078
ggggg%%%%%%bb!!a[==========ccc$$$$$eeee	chr20:11799598-11799841(-)$1	243	108	147	100.0392
qqccc]eeeee22dddd4444ffffff22aadddda22g	chr13:99857860-99858064(+)$1	204	107	146	105.9215
dddgggggggccc!!eeeeemmmmeeeee]ccc22gggg	chr14:50535190-50535451(+)$1	261	100	139	94.0588
:::gggggggccc####cccmmmmccc333ccc22gggg	chr20:41691929-41692164(+)$1	235	42	81	98.1764
ggggg[bb!!ccc[ccc!!eeeeedddd!!ccc!!dddd	chr6:76364860-76365114(-)$1	254	105	144	105.6274
CCCgggggggccc!!eeeeemmmmeeeee]ccc22gggg	chr9:77414730-77414936(+)$1	206	86	125	105.9215
CCCggggggg[eeeeebbnnnnnbb]eeeee4444gggg	chr2:158155403-158155668(-)$1	265	4	43	97.2941
GGGGG:dddd[ffffffccc[dddd[bbssssssssssb	chr3:139303078-139303332(-)$1	254	51	90	95.3333
GGGGG:::::ccc!!eeeeemmmmeeeee]ccc::::::	chr1:93491708-93491952(+)$1	244	106	145	93.0784
ggggg[a####bb!!a[=========="""ccc%%%%%%	chr5:6848434-6848670(-)$1	236	101	140	106.0196
iiiiiii####bb!!a[=========="""ccc%%%%%%	chr10:22221971-22222213(+)$1	242	106	145	100.1372
c[ccc[ccc!!bbqqqqqqqqbb]ccc]cccccc:bb[g	chr8:129232649-129232899(+)$1	250	106	145	103.5686
e[eeeee####bb!!a[=========="""ccc%%%%%%	chr6:52860320-52860561(+)$1	241	103	142	108.2745
GGGGG{BBffffff[a[cccmmmmccc]a0000000000	chr15:47564706-47564936(+)$1	230	93	132	98.9607
g::ccc[cccccc!!a[cccmmmmccc]a]ccc22ccc]	chr5:143915095-143915334(-)$1	239	107	146	100.2352
fffff[bb"""bb!!a[==========dddd####eeee	chr20:33969453-33969711(-)$1	258	107	146	98.6666
ggggg[bb"""bb$$$$$iiiiiiiii[bbccc!!eeee	chr20:17557010-17557255(-)$1	245	106	145	104.0588
f::gggggggccc!!eeeeemmmmeeeee]ccc22gggg	chr9:77414710-77414930(+)$1	220	106	145	105.9215
ggggg[a''''''''ccc[eeeeedddd!!ccc!!dddd	chr18:1323965-1324187(-)$1	222	107	146	99.3529
c[ggggggg!!bbqqqqqqqqbb]gggggggccc:::::	chr20:37390095-37390312(+)$1	217	81	120	98.8627
ggggg[a####bb!!a[=========="""ccc%%%%%%	chr5:6848470-6848676(-)$1	206	107	146	106.0196
"""gggggggccc!!a[cccmmmmccc]a]ccc22gggg	chr16:81995417-81995628(+)$1	211	119	158	108.2745
c[ggggggg!!bbqqqqqqqqbb]gggggggccc:ccc[	chr20:37390069-37390295(+)$1	226	107	146	98.8627
ggggg[bb"""bb$$$$$iiiiiiiii"""ccc%%%%%%	chr11:73543606-73543830(-)$1	224	101	140	101.8039
GGGGGOOOOOOBBKKA{JJJJJJJJJJdddduuuuuuuu	chr11:16863705-16863923(+)$1	218	100	139	104.8431
ggggg[a####bb!!a[=========="""ccc%%%%%%	chr9:77414736-77414943(+)$1	207	80	119	105.9215
c[ggggggg[bbpppppppbb333gggggggcccBB}EE	chr22:42961187-42961400(-)$1	213	70	109	105.6274
dddggggggg[bb!!eeeeemmmmeeeee]bb333gggg	chr9:25089000-25089250(-)$1	250	107	146	101.1176
iiiiiiiii]dddd:::==========[bbccc!!dddd	chr3:142392334-142392584(+)$1	250	112	151	106.0196
:::gggggggccc!!eeeeemmmmeeeee]ccc22gggg	chr17:70660034-70660285(-)$1	251	0	39	95.8235
DDDDffffffccc!!a[cccmmmmccc]a]ccc22ffff	chr22:42961112-42961364(-)$1	252	34	73	105.6274

#DB
..(((((...(((((((((((((((((...(((......	chr6:52860423-52860626(+)$1	1	0	39	108.2745
(((((((((.(((..(((((....))))).)))...)))	chr7:111928580-111928812(+)$1	1	103	142	101.3137
(((((.((...((((((..(((((((((..((((((...	chr20:18275956-18276187(-)$1	1	98	137	99.2549
(((((..(((((.((((.......((((.(((.......	chr14:90088161-90088404(+)$1	1	106	145	100.4313
(((((.((...((((((..(((((((((..((((((...	chr20:18275987-18276196(-)$1	1	107	146	99.2549
.)))(((((((((..(.((......)).).)))..))))	chr5:109035407-109035635(-)$1	1	106	145	103.6666
...((((((((((..(.(((....))).).)))..))))	chr16:81995432-81995673(+)$1	1	104	143	108.2745
..)))((((((((..(.(((....))).).)))..))))	chr9:34270772-34271021(-)$1	1	107	146	104.6470
..((((.(((((.((((.......(((((((((......	chr4:121982436-121982734(-)$1	1	107	146	94.3529
)))))))))))))))).((((((((((..((((......	chr4:7114024-7114227(-)$1	1	107	146	101.6078
(((((.(....((..(.((((((((((.(((((..((((	chr14:90178755-90178982(+)$1	1	105	144	108.2745
..))).)))))..))))....))))))..)))))))..)	chr13:99857864-99858086(+)$1	1	103	142	105.9215
)).))))))))......)))))))((((..(((..((((	chr16:81995428-81995632(+)$1	1	108	147	108.2745
(.(((((((.((.......))...)))))))))))).))	chr22:42961204-42961437(-)$1	1	107	146	105.6274
(((((.(((((((..((((......)))).)))..))))	chr6:132141377-132141672(+)$1	1	102	141	96.3137
...((((((.(((..(((((....))))).)))...)))	chr7:111928577-111928780(+)$1	1	106	145	101.3137
((((((((...((..(.((((((((((.(((((..((((	chr4:4922643-4922886(-)$1	1	101	140	103.2745
...(((......)))...)))))))).........))))	chr15:47564691-47564906(+)$1	1	108	147	98.9607
(((((...(((((((((.(.(((.((((....(((((((	chr12:14706760-14707006(-)$1	1	108	147	100.0392
)))))))))))))))).((((((((((..((((......	chr4:7114004-7114224(-)$1	1	104	143	101.6078
(((((......((..(.(((((((((((((.....((((	chr20:11799598-11799841(-)$1	1	108	147	100.0392
..))).)))))..))))....))))))..)))))))..)	chr13:99857860-99858064(+)$1	1	107	146	105.9215
)))((((((((((..(((((....))))).)))..))))	chr14:50535190-50535451(+)$1	1	100	139	94.0588
...((((((((((....(((....)))...)))..))))	chr20:41691929-41692164(+)$1	1	42	81	98.1764
(((((.((..(((.(((..(((((((((..(((..((((	chr6:76364860-76365114(-)$1	1	105	144	105.6274
(((((((((((((..(((((....))))).)))..))))	chr9:77414730-77414936(+)$1	1	86	125	105.9215
((((((((((.(((((((.....)).)))))....))))	chr2:158155403-158155668(-)$1	1	4	43	97.2941
(((((.((((.(((((((((.((((.((..........)	chr3:139303078-139303332(-)$1	1	51	90	95.3333
(((((.....(((..(((((....))))).)))......	chr1:93491708-93491952(+)$1	1	106	145	93.0784
(((((.(....((..(.((((((((((...(((......	chr5:6848434-6848670(-)$1	1	101	140	106.0196
(((((((....((..(.((((((((((...(((......	chr10:22221971-22222213(+)$1	1	106	145	100.1372
(.(((.(((..((........)).))).)))))).((.(	chr8:129232649-129232899(+)$1	1	106	145	103.5686
(.(((((....((..(.((((((((((...(((......	chr6:52860320-52860561(+)$1	1	103	142	108.2745
(((((.((((((((.(.(((....))).)..........	chr15:47564706-47564936(+)$1	1	93	132	98.9607
)..(((.((((((..(.(((....))).).)))..))).	chr5:143915095-143915334(-)$1	1	107	146	100.2352
(((((.((...((..(.((((((((((((((....((((	chr20:33969453-33969711(-)$1	1	107	146	98.6666
(((((.((...((.....(((((((((.(((((..((((	chr20:17557010-17557255(-)$1	1	106	145	104.0588
)..((((((((((..(((((....))))).)))..))))	chr9:77414710-77414930(+)$1	1	106	145	105.9215
(((((.(........(((.(((((((((..(((..((((	chr18:1323965-1324187(-)$1	1	107	146	99.3529
(.(((((((..((........)).)))))))))).....	chr20:37390095-37390312(+)$1	1	81	120	98.8627
(((((.(....((..(.((((((((((...(((......	chr5:6848470-6848676(-)$1	1	107	146	106.0196
...((((((((((..(.(((....))).).)))..))))	chr16:81995417-81995628(+)$1	1	119	158	108.2745
(.(((((((..((........)).)))))))))).(((.	chr20:37390069-37390295(+)$1	1	107	146	98.8627
(((((.((...((.....(((((((((...(((......	chr11:73543606-73543830(-)$1	1	101	140	101.8039
(((((......((..(.((((((((((((((........	chr11:16863705-16863923(+)$1	1	100	139	104.8431
(((((.(....((..(.((((((((((...(((......	chr9:77414736-77414943(+)$1	1	80	119	105.9215
(.(((((((.((.......))...)))))))))))).))	chr22:42961187-42961400(-)$1	1	70	109	105.6274
)))(((((((.((..(((((....))))).))...))))	chr9:25089000-25089250(-)$1	1	107	146	101.1176
))))))))).))))...((((((((((.(((((..((((	chr3:142392334-142392584(+)$1	1	112	151	106.0196
...((((((((((..(((((....))))).)))..))))	chr17:70660034-70660285(-)$1	1	0	39	95.8235
(((((((((((((..(.(((....))).).)))..))))	chr22:42961112-42961364(-)$1	1	34	73	105.6274

#PSSM
g : 0.98	c : 0.01	
a : 1.00	
g : 0.98	G : 0.01	
g : 1.00	
g : 0.98	a : 0.01	
c : 0.74	u : 0.21	a : 0.01	g : 0.01	
g : 0.84	a : 0.15	
a : 1.00	
u : 0.98	c : 0.01	
c : 1.00	
u : 0.98	c : 0.01	
g : 0.98	a : 0.01	
g : 0.96	a : 0.01	c : 0.01	
c : 0.96	a : 0.03	
u : 1.00	
g : 1.00	
c : 0.72	u : 0.25	a : 0.01	
g : 0.92	a : 0.07	
a : 0.98	g : 0.01	
c : 0.94	u : 0.03	a : 0.01	
a : 0.98	u : 0.01	
u : 1.00	
c : 0.96	u : 0.03	
u : 1.00	
g : 0.98	a : 0.01	
u : 1.00	
c : 1.00	
a : 1.00	
c : 0.92	u : 0.03	a : 0.01	g : 0.01	
c : 0.92	g : 0.03	u : 0.03	
c : 0.92	a : 0.03	u : 0.03	
c : 1.00	
a : 0.98	u : 0.01	
u : 0.94	c : 0.03	a : 0.01	
u : 1.00	
g : 0.96	a : 0.03	
a : 1.00	
u : 0.98	c : 0.01	
c : 0.72	u : 0.27	

#score	5210.1372549019625
#seq	51
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_CDS_m3_run1.nuc.txt

#NT
GCA	chr2:209176826-209177106(+)$1	280	7	10	8.9999
GCA	chr1:156220660-156220918(-)$1	258	157	160	8.9999
GCA	chr20:17956188-17956488(+)$1	300	180	183	8.9999
GCA	chr15:41106234-41106534(+)$1	300	40	43	8.9999
GCA	chr22:50660894-50661168(-)$1	274	147	150	8.9999
GCA	chrX:128615017-128615260(-)$1	243	20	23	8.9999
GCA	chr1:17740052-17740324(-)$1	272	16	19	8.9999
GCA	chr20:33437692-33437982(-)$1	290	193	196	8.9999
GCA	chr10:101372206-101372467(-)$1	261	24	27	8.9999
GCA	chr1:154227205-154227460(+)$1	255	32	35	8.9999
GCA	chr5:64859503-64859762(+)$1	259	125	128	8.9999
GCA	chr11:102056639-102056892(+)$1	253	63	66	8.9999
GCA	chr2:167129268-167129533(-)$1	265	26	29	8.9999
GCA	chr17:8135222-8135462(-)$1	240	110	113	8.9999
gca	chr20:54970466-54970716(+)$1	250	21	24	8.9999
GCA	chr10:121339382-121339656(-)$1	274	159	162	8.9999
GCA	chr7:5262119-5262364(+)$1	245	2	5	8.9999
GCA	chr16:28841062-28841284(+)$1	222	79	82	8.9999
GCA	chr14:35497180-35497434(+)$1	254	151	154	8.9999
GCA	chr2:122166487-122166745(-)$1	258	43	46	8.9999
GCA	chr2:228195228-228195479(+)$1	251	118	121	8.9999
GCA	chr10:5947883-5948160(+)$1	277	60	63	8.9999
GCA	chr3:23852821-23853093(+)$1	272	49	52	8.9999
GCA	chr6:31499064-31499287(-)$1	223	128	131	8.9999
GCA	chr14:35482901-35483162(+)$1	261	195	198	8.9999
GCA	chr17:56586034-56586336(-)$1	302	26	29	8.9999
gca	chr12:104341096-104341308(+)$1	212	28	31	8.9999
GCA	chr21:47685298-47685549(-)$1	251	37	40	8.9999
GCA	chr17:79220318-79220574(-)$1	256	50	53	8.9999
GCA	chr17:80207312-80207584(-)$1	272	36	39	8.9999
GCA	chr17:56067024-56067260(-)$1	236	41	44	8.9999
GCA	chr1:155701622-155701892(+)$1	270	56	59	8.9999
GCA	chr1:71532464-71532725(-)$1	261	230	233	8.9999
GCA	chr8:42177005-42177280(+)$1	275	96	99	8.9999
GCA	chr1:94945883-94946187(+)$1	304	23	26	8.9999
GCA	chr10:24833785-24834046(+)$1	261	7	10	8.9999
GCA	chr15:63353727-63354019(+)$1	292	15	18	8.9999
GCA	chr11:70185171-70185460(+)$1	289	119	122	8.9999
GCA	chr6:33248155-33248412(-)$1	257	168	171	8.9999
GCA	chr6:145161784-145162017(+)$1	233	116	119	8.9999
GCA	chr21:46193483-46193716(-)$1	233	18	21	8.9999
GCA	chr2:20494153-20494409(-)$1	256	135	138	8.9999
GCA	chr6:145161762-145161984(+)$1	222	138	141	8.9999
GCA	chr12:7252221-7252475(-)$1	254	49	52	8.9999
GCA	chr4:83763516-83763747(-)$1	231	157	160	8.9999
GCA	chr6:32943918-32944191(+)$1	273	24	27	8.9999
GCA	chr19:54972491-54972729(+)$1	238	38	41	8.9999
GCA	chr1:97278472-97278745(+)$1	273	122	125	8.9999
GCA	chr12:102124186-102124440(+)$1	254	17	20	8.9999
GCA	chr20:34214157-34214415(-)$1	258	48	51	8.9999
GCA	chr14:23535111-23535329(-)$1	218	206	209	8.9999
GCA	chrX:70753076-70753285(+)$1	209	25	28	8.9999
GCA	chr17:8132082-8132329(-)$1	247	30	33	8.9999
GCA	chr2:38523701-38523955(-)$1	254	88	91	8.9999
GCA	chr1:36411178-36411416(+)$1	238	110	113	8.9999
GCA	chr14:23444176-23444415(-)$1	239	36	39	8.9999
gca	chr12:104341062-104341288(+)$1	226	62	65	8.9999
gca	chr16:74943646-74943924(-)$1	278	18	21	8.9999
GCA	chr14:23794344-23794594(+)$1	250	33	36	8.9999
GCA	chr2:220099433-220099695(+)$1	262	52	55	8.9999
GCA	chr2:219557192-219557450(+)$1	258	67	70	8.9999
GCA	chr11:45967385-45967709(-)$1	324	175	178	8.9999
GCA	chr3:9471407-9471679(+)$1	272	141	144	8.9999
GCA	chr13:20245258-20245530(+)$1	272	120	123	8.9999
GCA	chr1:16892147-16892411(-)$1	264	116	119	8.9999
GCA	chrY:15026864-15027145(+)$1	281	173	176	8.9999
GCA	chr14:23777901-23778153(+)$1	252	19	22	8.9999
GCA	chr2:238485809-238486130(-)$1	321	23	26	8.9999
GCA	chr1:155886351-155886612(-)$1	261	2	5	8.9999
GCA	chr9:96062221-96062475(+)$1	254	52	55	8.9999
GCA	chr5:38886195-38886522(+)$1	327	257	260	8.9999
GCA	chr21:33064603-33064863(-)$1	260	104	107	8.9999
GCA	chr6:151330839-151331097(+)$1	258	88	91	8.9999
gca	chr9:15185254-15185539(-)$1	285	0	3	8.9999
GCA	chr8:145580650-145580937(-)$1	287	30	33	8.9999
GCA	chr5:32380114-32380387(-)$1	273	82	85	8.9999
GCA	chr1:70697451-70697681(+)$1	230	94	97	8.9999
GCA	chr14:39746029-39746286(+)$1	257	6	9	8.9999
GCA	chr10:5762401-5762717(+)$1	316	58	61	8.9999
GCA	chr16:29930816-29931066(-)$1	250	118	121	8.9999
GCA	chr14:51387665-51387903(-)$1	238	39	42	8.9999
GCA	chr1:160208402-160208651(-)$1	249	170	173	8.9999
GCA	chr9:95033802-95034066(-)$1	264	234	237	8.9999
GCA	chr2:209108193-209108460(-)$1	267	188	191	8.9999
GCA	chr6:43151923-43152194(+)$1	271	8	11	8.9999
GCA	chr20:30959857-30960108(+)$1	251	40	43	8.9999
gca	chr14:24614851-24615110(-)$1	259	24	27	8.9999
GCA	chr7:107642685-107642950(-)$1	265	114	117	8.9999
GCA	chr19:50031584-50031859(+)$1	275	21	24	8.9999
GCA	chr8:17824470-17824751(+)$1	281	51	54	8.9999
GCA	chr16:68225325-68225590(+)$1	265	31	34	8.9999
GCA	chr6:33163352-33163584(-)$1	232	162	165	8.9999

#otherMatches

#Struct PSSM
EEY	chr12:53926264-53926521(-)$1	257	249	252	8.9999
MEE	chr2:209176826-209177106(+)$1	280	7	10	8.9999
fmm	chr1:156220660-156220918(-)$1	258	157	160	8.9999
===	chr20:17956188-17956488(+)$1	300	180	183	8.9999
==g	chr15:41106234-41106534(+)$1	300	40	43	8.9999
b!!	chr22:50660894-50661168(-)$1	274	147	150	8.9999
LLL	chrX:128615017-128615260(-)$1	243	20	23	8.9999
DDD	chr1:17740052-17740324(-)$1	272	16	19	8.9999
hhh	chr20:33437692-33437982(-)$1	290	193	196	8.9999
DDD	chr10:101372206-101372467(-)$1	261	24	27	8.9999
ccc	chr1:154227205-154227460(+)$1	255	32	35	8.9999
""d	chr5:64859503-64859762(+)$1	259	125	128	8.9999
ee:	chr11:102056639-102056892(+)$1	253	63	66	8.9999
AOO	chr2:167129268-167129533(-)$1	265	26	29	8.9999
ddd	chr17:8135222-8135462(-)$1	240	110	113	8.9999
bbq	chr20:54970466-54970716(+)$1	250	21	24	8.9999
ff"	chr10:121339382-121339656(-)$1	274	159	162	8.9999
::G	chr7:5262119-5262364(+)$1	245	2	5	8.9999
qqq	chr16:28841062-28841284(+)$1	222	79	82	8.9999
eee	chr14:35497180-35497434(+)$1	254	151	154	8.9999
bb]	chr2:122166487-122166745(-)$1	258	43	46	8.9999
c[d	chr2:228195228-228195479(+)$1	251	118	121	8.9999
::F	chr10:5947883-5948160(+)$1	277	60	63	8.9999
ee:	chr3:23852821-23853093(+)$1	272	49	52	8.9999
[bb	chr6:31499064-31499287(-)$1	223	128	131	8.9999
ccc	chr14:35482901-35483162(+)$1	261	195	198	8.9999
bb:	chr17:56586034-56586336(-)$1	302	26	29	8.9999
bb^	chr12:104341096-104341308(+)$1	212	28	31	8.9999
:::	chr21:47685298-47685549(-)$1	251	37	40	8.9999
eee	chr17:79220318-79220574(-)$1	256	50	53	8.9999
ggg	chr17:80207312-80207584(-)$1	272	36	39	8.9999
b''	chr17:56067024-56067260(-)$1	236	41	44	8.9999
xxx	chr1:155701622-155701892(+)$1	270	56	59	8.9999
^^^	chr1:71532464-71532725(-)$1	261	230	233	8.9999
fff	chr8:42177005-42177280(+)$1	275	96	99	8.9999
c]e	chr1:94945883-94946187(+)$1	304	23	26	8.9999
HHH	chr10:24833785-24834046(+)$1	261	7	10	8.9999
g[d	chr15:63353727-63354019(+)$1	292	15	18	8.9999
eoo	chr11:70185171-70185460(+)$1	289	119	122	8.9999
bb!	chr6:33248155-33248412(-)$1	257	168	171	8.9999
DDY	chr6:145161784-145162017(+)$1	233	116	119	8.9999
ggg	chr21:46193483-46193716(-)$1	233	18	21	8.9999
mmm	chr2:20494153-20494409(-)$1	256	135	138	8.9999
xxx	chr6:145161762-145161984(+)$1	222	138	141	8.9999
c$$	chr12:7252221-7252475(-)$1	254	49	52	8.9999
cc!	chr4:83763516-83763747(-)$1	231	157	160	8.9999
DD{	chr6:32943918-32944191(+)$1	273	24	27	8.9999
ddv	chr19:54972491-54972729(+)$1	238	38	41	8.9999
cc[	chr1:97278472-97278745(+)$1	273	122	125	8.9999
dd]	chr12:102124186-102124440(+)$1	254	17	20	8.9999
BB{	chr20:34214157-34214415(-)$1	258	48	51	8.9999
DDD	chr14:23535111-23535329(-)$1	218	206	209	8.9999
DD{	chrX:70753076-70753285(+)$1	209	25	28	8.9999
DD:	chr17:8132082-8132329(-)$1	247	30	33	8.9999
c:h	chr2:38523701-38523955(-)$1	254	88	91	8.9999
GGG	chr1:36411178-36411416(+)$1	238	110	113	8.9999
ELL	chr14:23444176-23444415(-)$1	239	36	39	8.9999
>>>	chr12:104341062-104341288(+)$1	226	62	65	8.9999
EEE	chr16:74943646-74943924(-)$1	278	18	21	8.9999
ddm	chr14:23794344-23794594(+)$1	250	33	36	8.9999
NNN	chr2:220099433-220099695(+)$1	262	52	55	8.9999
eee	chr2:219557192-219557450(+)$1	258	67	70	8.9999
ccc	chr11:45967385-45967709(-)$1	324	175	178	8.9999
B::	chr3:9471407-9471679(+)$1	272	141	144	8.9999
b[b	chr13:20245258-20245530(+)$1	272	120	123	8.9999
ddd	chr1:16892147-16892411(-)$1	264	116	119	8.9999
"bb	chrY:15026864-15027145(+)$1	281	173	176	8.9999
&&f	chr14:23777901-23778153(+)$1	252	19	22	8.9999
+++	chr2:238485809-238486130(-)$1	321	23	26	8.9999
:::	chr1:155886351-155886612(-)$1	261	2	5	8.9999
I{D	chr9:96062221-96062475(+)$1	254	52	55	8.9999
emm	chr5:38886195-38886522(+)$1	327	257	260	8.9999
EKK	chr21:33064603-33064863(-)$1	260	104	107	8.9999
DDD	chr6:151330839-151331097(+)$1	258	88	91	8.9999
CCC	chr9:15185254-15185539(-)$1	285	0	3	8.9999
CCD	chr8:145580650-145580937(-)$1	287	30	33	8.9999
ggg	chr5:32380114-32380387(-)$1	273	82	85	8.9999
[dd	chr1:70697451-70697681(+)$1	230	94	97	8.9999
DKK	chr14:39746029-39746286(+)$1	257	6	9	8.9999
doo	chr10:5762401-5762717(+)$1	316	58	61	8.9999
ddd	chr16:29930816-29931066(-)$1	250	118	121	8.9999
JJJ	chr14:51387665-51387903(-)$1	238	39	42	8.9999
fff	chr1:160208402-160208651(-)$1	249	170	173	8.9999
}EE	chr9:95033802-95034066(-)$1	264	234	237	8.9999
cmm	chr2:209108193-209108460(-)$1	267	188	191	8.9999
:::	chr6:43151923-43152194(+)$1	271	8	11	8.9999
ddd	chr20:30959857-30960108(+)$1	251	40	43	8.9999
JJJ	chr14:24614851-24615110(-)$1	259	24	27	8.9999
cc[	chr7:107642685-107642950(-)$1	265	114	117	8.9999
ddd	chr19:50031584-50031859(+)$1	275	21	24	8.9999
ccc	chr8:17824470-17824751(+)$1	281	51	54	8.9999
DDD	chr16:68225325-68225590(+)$1	265	31	34	8.9999
eee	chr6:33163352-33163584(-)$1	232	162	165	8.9999

#DB
)).	chr12:53926264-53926521(-)$1	1	249	252	8.9999
.((	chr2:209176826-209177106(+)$1	1	7	10	8.9999
(..	chr1:156220660-156220918(-)$1	1	157	160	8.9999
)))	chr20:17956188-17956488(+)$1	1	180	183	8.9999
))(	chr15:41106234-41106534(+)$1	1	40	43	8.9999
(..	chr22:50660894-50661168(-)$1	1	147	150	8.9999
...	chrX:128615017-128615260(-)$1	1	20	23	8.9999
(((	chr1:17740052-17740324(-)$1	1	16	19	8.9999
(((	chr20:33437692-33437982(-)$1	1	193	196	8.9999
(((	chr10:101372206-101372467(-)$1	1	24	27	8.9999
(((	chr1:154227205-154227460(+)$1	1	32	35	8.9999
..(	chr5:64859503-64859762(+)$1	1	125	128	8.9999
)).	chr11:102056639-102056892(+)$1	1	63	66	8.9999
(..	chr2:167129268-167129533(-)$1	1	26	29	8.9999
)))	chr17:8135222-8135462(-)$1	1	110	113	8.9999
((.	chr20:54970466-54970716(+)$1	1	21	24	8.9999
((.	chr10:121339382-121339656(-)$1	1	159	162	8.9999
..(	chr7:5262119-5262364(+)$1	1	2	5	8.9999
...	chr16:28841062-28841284(+)$1	1	79	82	8.9999
(((	chr14:35497180-35497434(+)$1	1	151	154	8.9999
)).	chr2:122166487-122166745(-)$1	1	43	46	8.9999
(.(	chr2:228195228-228195479(+)$1	1	118	121	8.9999
..(	chr10:5947883-5948160(+)$1	1	60	63	8.9999
)).	chr3:23852821-23853093(+)$1	1	49	52	8.9999
.((	chr6:31499064-31499287(-)$1	1	128	131	8.9999
(((	chr14:35482901-35483162(+)$1	1	195	198	8.9999
)).	chr17:56586034-56586336(-)$1	1	26	29	8.9999
((.	chr12:104341096-104341308(+)$1	1	28	31	8.9999
...	chr21:47685298-47685549(-)$1	1	37	40	8.9999
(((	chr17:79220318-79220574(-)$1	1	50	53	8.9999
(((	chr17:80207312-80207584(-)$1	1	36	39	8.9999
(..	chr17:56067024-56067260(-)$1	1	41	44	8.9999
...	chr1:155701622-155701892(+)$1	1	56	59	8.9999
...	chr1:71532464-71532725(-)$1	1	230	233	8.9999
(((	chr8:42177005-42177280(+)$1	1	96	99	8.9999
).)	chr1:94945883-94946187(+)$1	1	23	26	8.9999
(((	chr10:24833785-24834046(+)$1	1	7	10	8.9999
(.(	chr15:63353727-63354019(+)$1	1	15	18	8.9999
(..	chr11:70185171-70185460(+)$1	1	119	122	8.9999
((.	chr6:33248155-33248412(-)$1	1	168	171	8.9999
)).	chr6:145161784-145162017(+)$1	1	116	119	8.9999
(((	chr21:46193483-46193716(-)$1	1	18	21	8.9999
...	chr2:20494153-20494409(-)$1	1	135	138	8.9999
...	chr6:145161762-145161984(+)$1	1	138	141	8.9999
(..	chr12:7252221-7252475(-)$1	1	49	52	8.9999
((.	chr4:83763516-83763747(-)$1	1	157	160	8.9999
((.	chr6:32943918-32944191(+)$1	1	24	27	8.9999
((.	chr19:54972491-54972729(+)$1	1	38	41	8.9999
((.	chr1:97278472-97278745(+)$1	1	122	125	8.9999
)).	chr12:102124186-102124440(+)$1	1	17	20	8.9999
((.	chr20:34214157-34214415(-)$1	1	48	51	8.9999
)))	chr14:23535111-23535329(-)$1	1	206	209	8.9999
((.	chrX:70753076-70753285(+)$1	1	25	28	8.9999
((.	chr17:8132082-8132329(-)$1	1	30	33	8.9999
).(	chr2:38523701-38523955(-)$1	1	88	91	8.9999
(((	chr1:36411178-36411416(+)$1	1	110	113	8.9999
(..	chr14:23444176-23444415(-)$1	1	36	39	8.9999
...	chr12:104341062-104341288(+)$1	1	62	65	8.9999
(((	chr16:74943646-74943924(-)$1	1	18	21	8.9999
((.	chr14:23794344-23794594(+)$1	1	33	36	8.9999
...	chr2:220099433-220099695(+)$1	1	52	55	8.9999
)))	chr2:219557192-219557450(+)$1	1	67	70	8.9999
)))	chr11:45967385-45967709(-)$1	1	175	178	8.9999
)..	chr3:9471407-9471679(+)$1	1	141	144	8.9999
(.(	chr13:20245258-20245530(+)$1	1	120	123	8.9999
)))	chr1:16892147-16892411(-)$1	1	116	119	8.9999
.((	chrY:15026864-15027145(+)$1	1	173	176	8.9999
..(	chr14:23777901-23778153(+)$1	1	19	22	8.9999
...	chr2:238485809-238486130(-)$1	1	23	26	8.9999
...	chr1:155886351-155886612(-)$1	1	2	5	8.9999
(.(	chr9:96062221-96062475(+)$1	1	52	55	8.9999
(..	chr5:38886195-38886522(+)$1	1	257	260	8.9999
(..	chr21:33064603-33064863(-)$1	1	104	107	8.9999
(((	chr6:151330839-151331097(+)$1	1	88	91	8.9999
(((	chr9:15185254-15185539(-)$1	1	0	3	8.9999
(((	chr8:145580650-145580937(-)$1	1	30	33	8.9999
(((	chr5:32380114-32380387(-)$1	1	82	85	8.9999
.((	chr1:70697451-70697681(+)$1	1	94	97	8.9999
(..	chr14:39746029-39746286(+)$1	1	6	9	8.9999
(..	chr10:5762401-5762717(+)$1	1	58	61	8.9999
)))	chr16:29930816-29931066(-)$1	1	118	121	8.9999
(((	chr14:51387665-51387903(-)$1	1	39	42	8.9999
)))	chr1:160208402-160208651(-)$1	1	170	173	8.9999
.))	chr9:95033802-95034066(-)$1	1	234	237	8.9999
(..	chr2:209108193-209108460(-)$1	1	188	191	8.9999
...	chr6:43151923-43152194(+)$1	1	8	11	8.9999
(((	chr20:30959857-30960108(+)$1	1	40	43	8.9999
(((	chr14:24614851-24615110(-)$1	1	24	27	8.9999
((.	chr7:107642685-107642950(-)$1	1	114	117	8.9999
(((	chr19:50031584-50031859(+)$1	1	21	24	8.9999
)))	chr8:17824470-17824751(+)$1	1	51	54	8.9999
(((	chr16:68225325-68225590(+)$1	1	31	34	8.9999
(((	chr6:33163352-33163584(-)$1	1	162	165	8.9999

#PSSM
G : 0.93	g : 0.06	
C : 0.93	c : 0.06	
A : 0.93	a : 0.06	

#score	836.9999999999999
#seq	93
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_UTR_m2_run2.nuc.txt

#NT
GGGCCGGC	chr12:107168551-107168822(+)$1	271	3	11	16.2549
GGGCCAGG	chr2:163200709-163200979(+)$1	270	221	229	16.2549
GGGCCAGG	chr5:133340162-133340409(-)$1	247	121	129	16.2549
GGGCCGGC	chr17:36904258-36904522(-)$1	264	140	148	16.2549
GGGCCGGC	chr2:242255328-242255573(+)$1	245	104	112	16.2549
gggccggg	chr17:8339412-8339669(+)$1	257	65	73	19.9803
GGGCCUGG	chr6:30684808-30685081(-)$1	273	71	79	16.5490
GGGCGGGG	chr22:36924937-36925194(-)$1	257	196	204	15.6666
GGGCCGGC	chr15:59280193-59280492(+)$1	299	134	142	16.2549
GGGCCCGG	chr6:31937121-31937377(+)$1	256	62	70	16.0588
CGGCCGGG	chr1:226496637-226496884(-)$1	247	136	144	15.5686
GGGCCUGG	chr6:74230519-74230780(-)$1	261	82	90	16.5490
gggccgcg	chr3:5229939-5230192(+)$1	253	81	89	15.7647
GGGCCGGG	chr2:29117811-29118091(+)$1	280	36	44	19.9803
gggcuggg	chr2:233415370-233415680(+)$1	310	150	158	15.7647
GGGCCGGG	chr20:3748126-3748381(-)$1	255	216	224	19.9803
GGGCCUGG	chr17:79082235-79082485(+)$1	250	38	46	16.5490
GGGCUGGG	chr9:131830527-131830830(+)$1	303	177	185	15.7647
ggggcggg	chr17:74732713-74732977(-)$1	264	127	135	15.6666
Aggccggg	chr17:42266882-42267128(+)$1	246	227	235	15.5686
GAGCCGGG	chr18:47018513-47018766(-)$1	253	114	122	15.2745
gggccggg	chr17:17720834-17721085(-)$1	251	138	146	19.9803
GGGCCGGU	chr17:39942649-39942911(-)$1	262	130	138	15.9607
UGGCCGGG	chr20:19998035-19998286(+)$1	251	90	98	15.7647
GGGCGGGG	chr15:41099389-41099642(-)$1	253	182	190	15.6666
GGCCCGGG	chr14:24563576-24563826(+)$1	250	80	88	15.3725
GGGCCGGU	chr11:72533513-72533775(+)$1	262	89	97	15.9607
GGGCCGGC	chr2:130938858-130939165(-)$1	307	164	172	16.2549
GGGCCUGG	chr19:18468345-18468603(+)$1	258	38	46	16.5490
GGGCCGGG	chr1:146714422-146714697(+)$1	275	118	126	19.9803
GGGCCGGG	chr16:66864539-66864852(-)$1	313	155	163	19.9803
GGGCCUGG	chr5:133512333-133512613(-)$1	280	170	178	16.5490
GGGCCGGG	chr2:9770836-9771120(-)$1	284	101	109	19.9803
GCGCCGGG	chr9:33025278-33025552(+)$1	274	152	160	15.2745
UGGCCGGG	chr12:125398932-125399190(-)$1	258	79	87	15.7647
GGGCCGCG	chr14:64971592-64971850(+)$1	258	131	139	15.7647
GGGCCGGG	chr9:86595741-86596053(+)$1	312	204	212	19.9803
gggccggg	chr17:8339279-8339548(+)$1	269	198	206	19.9803
UGGCCGGG	chr12:125398990-125399203(-)$1	213	92	100	15.7647
GGGCCGAG	chr19:18668653-18668973(+)$1	320	92	100	15.5686
GGGCCGUG	chr4:152020792-152021041(+)$1	249	184	192	15.5686
GGGCUGGG	chr16:28875088-28875354(+)$1	266	80	88	15.7647
GGGGCGGG	chr1:21112959-21113212(-)$1	253	121	129	15.6666
GGGGCGGG	chr12:3069171-3069384(+)$1	213	184	192	15.6666
GGGCCGGA	chr17:79532338-79532603(-)$1	265	112	120	15.8627
GGCCCGGG	chr16:2317880-2318129(-)$1	249	222	230	15.3725
gggccggg	chr8:38644623-38644919(+)$1	296	182	190	19.9803
GGGUCGGG	chr16:2014635-2014885(-)$1	250	138	146	15.4705
Gggccagg	chr12:49723171-49723414(+)$1	243	154	162	16.2549
GGGCCGCG	chr16:279049-279353(-)$1	304	149	157	15.7647

#otherMatches

#Struct PSSM
hhhsssss	chr20:44441403-44441646(+)$1	243	173	181	16.5490
CCCKKDDD	chr12:107168551-107168822(+)$1	271	3	11	16.2549
i]eeeeeD	chr2:163200709-163200979(+)$1	270	221	229	16.2549
fffflllf	chr5:133340162-133340409(-)$1	247	121	129	16.2549
eeee!!bb	chr17:36904258-36904522(-)$1	264	140	148	16.2549
JJJJJ}DD	chr2:242255328-242255573(+)$1	245	104	112	16.2549
=====AKK	chr17:8339412-8339669(+)$1	257	65	73	19.9803
CC{CCCEE	chr6:30684808-30685081(-)$1	273	71	79	16.5490
cccccc:I	chr22:36924937-36925194(-)$1	257	196	204	15.6666
a]a]ffff	chr15:59280193-59280492(+)$1	299	134	142	16.2549
]eeeeeDD	chr6:31937121-31937377(+)$1	256	62	70	16.0588
[eeeeepp	chr1:226496637-226496884(-)$1	247	136	144	15.5686
fffff[ff	chr6:74230519-74230780(-)$1	261	82	90	16.5490
JJJJJeee	chr3:5229939-5230192(+)$1	253	81	89	15.7647
hhhhhhcc	chr2:29117811-29118091(+)$1	280	36	44	19.9803
eeee]bb]	chr2:233415370-233415680(+)$1	310	150	158	15.7647
GGGYYDDD	chr20:3748126-3748381(-)$1	255	216	224	19.9803
cccc22cc	chr17:79082235-79082485(+)$1	250	38	46	16.5490
ccc[cccm	chr9:131830527-131830830(+)$1	303	177	185	15.7647
DD{A:ddd	chr17:74732713-74732977(-)$1	264	127	135	15.6666
GGGCCCDD	chr17:42266882-42267128(+)$1	246	227	235	15.5686
lll=====	chr18:47018513-47018766(-)$1	253	114	122	15.2745
3ccc]ddd	chr17:17720834-17721085(-)$1	251	138	146	19.9803
meeeee]b	chr17:39942649-39942911(-)$1	262	130	138	15.9607
#ggggggg	chr20:19998035-19998286(+)$1	251	90	98	15.7647
d[ffffff	chr15:41099389-41099642(-)$1	253	182	190	15.6666
bb]ggggg	chr14:24563576-24563826(+)$1	250	80	88	15.3725
d22agggg	chr11:72533513-72533775(+)$1	262	89	97	15.9607
ddddbb:f	chr2:130938858-130939165(-)$1	307	164	172	16.2549
ffffff!!	chr19:18468345-18468603(+)$1	258	38	46	16.5490
6hhhhhhh	chr1:146714422-146714697(+)$1	275	118	126	19.9803
ee:ccc[c	chr16:66864539-66864852(-)$1	313	155	163	19.9803
dddeeeee	chr5:133512333-133512613(-)$1	280	170	178	16.5490
ddddccc]	chr2:9770836-9771120(-)$1	284	101	109	19.9803
gsssssss	chr9:33025278-33025552(+)$1	274	152	160	15.2745
[eeeee[a	chr12:125398932-125399190(-)$1	258	79	87	15.7647
JJJJ{AKK	chr14:64971592-64971850(+)$1	258	131	139	15.7647
ggggg[dd	chr9:86595741-86596053(+)$1	312	204	212	19.9803
=====bbd	chr17:8339279-8339548(+)$1	269	198	206	19.9803
[eeeee[a	chr12:125398990-125399203(-)$1	213	92	100	15.7647
[dddd%%%	chr19:18668653-18668973(+)$1	320	92	100	15.5686
iiiiiiii	chr4:152020792-152021041(+)$1	249	184	192	15.5686
HHHHHHHH	chr16:28875088-28875354(+)$1	266	80	88	15.7647
nnffffff	chr1:21112959-21113212(-)$1	253	121	129	15.6666
f]cccCCC	chr12:3069171-3069384(+)$1	213	184	192	15.6666
ddd22bb]	chr17:79532338-79532603(-)$1	265	112	120	15.8627
ffffff]a	chr16:2317880-2318129(-)$1	249	222	230	15.3725
{GGGGGGG	chr8:38644623-38644919(+)$1	296	182	190	19.9803
eee"""cc	chr16:2014635-2014885(-)$1	250	138	146	15.4705
GGGGG}DD	chr12:49723171-49723414(+)$1	243	154	162	16.2549
ddddpppp	chr16:279049-279353(-)$1	304	149	157	15.7647

#DB
(((.....	chr20:44441403-44441646(+)$1	1	173	181	16.5490
(((..(((	chr12:107168551-107168822(+)$1	1	3	11	16.2549
).))))))	chr2:163200709-163200979(+)$1	1	221	229	16.2549
((((...)	chr5:133340162-133340409(-)$1	1	121	129	16.2549
((((..((	chr17:36904258-36904522(-)$1	1	140	148	16.2549
))))).))	chr2:242255328-242255573(+)$1	1	104	112	16.2549
)))))(..	chr17:8339412-8339669(+)$1	1	65	73	19.9803
((.(((((	chr6:30684808-30685081(-)$1	1	71	79	16.5490
)))))).)	chr22:36924937-36925194(-)$1	1	196	204	15.6666
).).))))	chr15:59280193-59280492(+)$1	1	134	142	16.2549
.)))))((	chr6:31937121-31937377(+)$1	1	62	70	16.0588
.(((((..	chr1:226496637-226496884(-)$1	1	136	144	15.5686
(((((.((	chr6:74230519-74230780(-)$1	1	82	90	16.5490
((((((((	chr3:5229939-5230192(+)$1	1	81	89	15.7647
((((((((	chr2:29117811-29118091(+)$1	1	36	44	19.9803
)))).)).	chr2:233415370-233415680(+)$1	1	150	158	15.7647
)))..)))	chr20:3748126-3748381(-)$1	1	216	224	19.9803
))))..))	chr17:79082235-79082485(+)$1	1	38	46	16.5490
(((.(((.	chr9:131830527-131830830(+)$1	1	177	185	15.7647
((.(.(((	chr17:74732713-74732977(-)$1	1	127	135	15.6666
))))))))	chr17:42266882-42267128(+)$1	1	227	235	15.5686
...)))))	chr18:47018513-47018766(-)$1	1	114	122	15.2745
.))).)))	chr17:17720834-17721085(-)$1	1	138	146	19.9803
.))))).)	chr17:39942649-39942911(-)$1	1	130	138	15.9607
.(((((((	chr20:19998035-19998286(+)$1	1	90	98	15.7647
(.((((((	chr15:41099389-41099642(-)$1	1	182	190	15.6666
)).)))))	chr14:24563576-24563826(+)$1	1	80	88	15.3725
)..)))))	chr11:72533513-72533775(+)$1	1	89	97	15.9607
)))))).(	chr2:130938858-130939165(-)$1	1	164	172	16.2549
((((((..	chr19:18468345-18468603(+)$1	1	38	46	16.5490
.)))))))	chr1:146714422-146714697(+)$1	1	118	126	19.9803
)).(((.(	chr16:66864539-66864852(-)$1	1	155	163	19.9803
((((((((	chr5:133512333-133512613(-)$1	1	170	178	16.5490
))))))).	chr2:9770836-9771120(-)$1	1	101	109	19.9803
(.......	chr9:33025278-33025552(+)$1	1	152	160	15.2745
.(((((.(	chr12:125398932-125399190(-)$1	1	79	87	15.7647
((((.(..	chr14:64971592-64971850(+)$1	1	131	139	15.7647
(((((.((	chr9:86595741-86596053(+)$1	1	204	212	19.9803
))))))))	chr17:8339279-8339548(+)$1	1	198	206	19.9803
.(((((.(	chr12:125398990-125399203(-)$1	1	92	100	15.7647
.((((...	chr19:18668653-18668973(+)$1	1	92	100	15.5686
((((((((	chr4:152020792-152021041(+)$1	1	184	192	15.5686
((((((((	chr16:28875088-28875354(+)$1	1	80	88	15.7647
..))))))	chr1:21112959-21113212(-)$1	1	121	129	15.6666
).))))))	chr12:3069171-3069384(+)$1	1	184	192	15.6666
)))..)).	chr17:79532338-79532603(-)$1	1	112	120	15.8627
)))))).)	chr16:2317880-2318129(-)$1	1	222	230	15.3725
.(((((((	chr8:38644623-38644919(+)$1	1	182	190	19.9803
(((...((	chr16:2014635-2014885(-)$1	1	138	146	15.4705
))))).))	chr12:49723171-49723414(+)$1	1	154	162	16.2549
((((....	chr16:279049-279353(-)$1	1	149	157	15.7647

#PSSM
G : 0.76	g : 0.13	U : 0.05	C : 0.01	A : 0.01	
G : 0.78	g : 0.17	A : 0.01	C : 0.01	
G : 0.78	g : 0.17	C : 0.03	
C : 0.76	c : 0.15	G : 0.03	g : 0.01	U : 0.01	
C : 0.74	c : 0.15	G : 0.03	U : 0.03	u : 0.01	
G : 0.64	g : 0.15	U : 0.11	A : 0.03	C : 0.01	a : 0.01	
G : 0.74	g : 0.15	C : 0.03	c : 0.01	A : 0.01	U : 0.01	
G : 0.66	g : 0.17	C : 0.09	U : 0.03	A : 0.01	

#score	852.2352941176475
#seq	51
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_transcript_m3_run1.nuc.txt

#NT
CCAG	chr2:74756388-74756598(-)$1	210	18	22	12.0000
CCAG	chr18:55996153-55996462(+)$1	309	115	119	12.0000
CCAG	chr12:133253833-133254099(-)$1	266	187	191	12.0000
ccag	chr6:31851491-31851704(-)$1	213	193	197	12.0000
CCAG	chr17:61838225-61838439(-)$1	214	148	152	12.0000
CCAG	chr5:95087842-95088108(+)$1	266	208	212	12.0000
CCAG	chr1:21191507-21191771(-)$1	264	84	88	12.0000
CCAG	chr3:185364683-185364907(-)$1	224	3	7	12.0000
CCAG	chr10:116205027-116205265(-)$1	238	11	15	12.0000
CCAG	chr14:56078679-56078972(+)$1	293	287	291	12.0000
CCAG	chr7:148427171-148427439(+)$1	268	60	64	12.0000
CCAG	chr1:1562154-1562457(+)$1	303	245	249	12.0000
CCAG	chr18:34387761-34388002(-)$1	241	31	35	12.0000
CCAG	chr19:46351995-46352236(-)$1	241	204	208	12.0000
CCAG	chr19:10791889-10792108(+)$1	219	83	87	12.0000
CCAG	chr17:8424473-8424701(-)$1	228	94	98	12.0000
CCAG	chr9:136654308-136654565(-)$1	257	64	68	12.0000
CCAG	chr4:38933832-38934086(+)$1	254	131	135	12.0000
CCAG	chr17:38319785-38320067(+)$1	282	14	18	12.0000
CCAG	chr2:74592550-74592829(-)$1	279	41	45	12.0000
CCAG	chr20:34057688-34057910(+)$1	222	53	57	12.0000
CCAG	chr17:40811248-40811468(+)$1	220	56	60	12.0000
CCAG	chr21:46363630-46363878(+)$1	248	17	21	12.0000
CCAG	chr20:50255790-50256047(-)$1	257	57	61	12.0000
CCAG	chr19:57325064-57325304(-)$1	240	41	45	12.0000
CCAG	chrX:19368011-19368282(+)$1	271	95	99	12.0000
CCAG	chr7:74105327-74105543(+)$1	216	80	84	12.0000
CCAG	chr12:12871060-12871327(+)$1	267	30	34	12.0000
CCAG	chr22:38699099-38699316(-)$1	217	127	131	12.0000
CCAG	chr16:8891702-8891906(+)$1	204	52	56	12.0000
CCAG	chr6:33177621-33177862(+)$1	241	66	70	12.0000
CCAG	chr5:171423811-171424137(-)$1	326	240	244	12.0000
CCAG	chr19:10934412-10934674(+)$1	262	96	100	12.0000
CCAG	chr20:20552404-20552638(-)$1	234	80	84	12.0000
CCAG	chr1:150900215-150900493(+)$1	278	231	235	12.0000
CCAG	chr20:39728761-39728983(+)$1	222	194	198	12.0000
CCAG	chr16:86575206-86575523(-)$1	317	7	11	12.0000
CCAG	chr2:176812161-176812430(-)$1	269	54	58	12.0000
CCAG	chr17:39976137-39976384(+)$1	247	56	60	12.0000
CCAG	chr19:49601798-49602012(+)$1	214	42	46	12.0000
CCAG	chr14:24114280-24114505(+)$1	225	13	17	12.0000
CCAG	chr4:83349431-83349662(-)$1	231	2	6	12.0000
CCAG	chr22:29747592-29747883(-)$1	291	65	69	12.0000
CCAG	chr19:2438320-2438626(-)$1	306	130	134	12.0000
CCAG	chr22:23980783-23981115(-)$1	332	133	137	12.0000
CCAG	chr16:14916723-14916985(-)$1	262	68	72	12.0000
CCAG	chr12:96350367-96350644(+)$1	277	124	128	12.0000
CCAG	chr17:65889463-65889713(+)$1	250	183	187	12.0000
CCAG	chr14:23393211-23393468(-)$1	257	152	156	12.0000
CCAG	chr1:33276090-33276364(-)$1	274	161	165	12.0000
CCAG	chr3:137947718-137947959(+)$1	241	94	98	12.0000
CCAG	chr17:43163907-43164122(+)$1	215	78	82	12.0000
CCAG	chr17:80442613-80442872(+)$1	259	119	123	12.0000
CCAG	chr1:155823189-155823547(-)$1	358	75	79	12.0000
CCAG	chr20:3146100-3146356(-)$1	256	36	40	12.0000
CCAG	chr6:135318443-135318760(-)$1	317	120	124	12.0000
CCAG	chr20:2638478-2638699(+)$1	221	137	141	12.0000
CCAG	chr6:117866538-117866853(+)$1	315	98	102	12.0000
CCAG	chr20:43559057-43559275(+)$1	218	13	17	12.0000
CCAG	chr17:27060978-27061305(+)$1	327	52	56	12.0000
CCAG	chr15:25605429-25605676(-)$1	247	137	141	12.0000
CCAG	chr20:40081357-40081623(-)$1	266	18	22	12.0000
CCAG	chr11:94192474-94192720(-)$1	246	74	78	12.0000
CCAG	chr16:1793349-1793615(+)$1	266	100	104	12.0000
CCAG	chr4:83348578-83348817(-)$1	239	181	185	12.0000
CCAG	chr1:36769506-36769757(+)$1	251	137	141	12.0000
CCAG	chr1:8716008-8716306(-)$1	298	268	272	12.0000
CCAG	chr2:232573139-232573417(+)$1	278	213	217	12.0000
CCAG	chr19:11107083-11107320(+)$1	237	82	86	12.0000
CCAG	chr16:1735364-1735625(+)$1	261	88	92	12.0000
CCAG	chr17:73237380-73237637(-)$1	257	36	40	12.0000
CCAG	chr19:54967867-54968095(+)$1	228	49	53	12.0000
CCAG	chr22:45559871-45560172(+)$1	301	55	59	12.0000
CCAG	chr1:8616432-8616669(-)$1	237	68	72	12.0000
CCAG	chr19:23578061-23578371(-)$1	310	121	125	12.0000
CCAG	chr7:76609851-76610164(+)$1	313	120	124	12.0000
CCAG	chr7:56123301-56123570(+)$1	269	133	137	12.0000
CCAG	chr12:56561741-56561999(-)$1	258	80	84	12.0000
CCAG	chr9:131347927-131348144(+)$1	217	95	99	12.0000
CCAG	chr19:13051045-13051259(+)$1	214	50	54	12.0000

#otherMatches

#Struct PSSM
eee[	chrX:54954934-54955200(+)$1	266	198	202	12.0000
EEEE	chr2:74756388-74756598(-)$1	210	18	22	12.0000
:::f	chr18:55996153-55996462(+)$1	309	115	119	12.0000
ffff	chr12:133253833-133254099(-)$1	266	187	191	12.0000
BCCC	chr6:31851491-31851704(-)$1	213	193	197	12.0000
ffff	chr17:61838225-61838439(-)$1	214	148	152	12.0000
oeee	chr5:95087842-95088108(+)$1	266	208	212	12.0000
nnnn	chr1:21191507-21191771(-)$1	264	84	88	12.0000
EEEE	chr3:185364683-185364907(-)$1	224	3	7	12.0000
pddd	chr10:116205027-116205265(-)$1	238	11	15	12.0000
::::	chr14:56078679-56078972(+)$1	293	287	291	12.0000
eeee	chr7:148427171-148427439(+)$1	268	60	64	12.0000
cc!!	chr1:1562154-1562457(+)$1	303	245	249	12.0000
fDDD	chr18:34387761-34388002(-)$1	241	31	35	12.0000
::::	chr19:46351995-46352236(-)$1	241	204	208	12.0000
DD::	chr19:10791889-10792108(+)$1	219	83	87	12.0000
5ccc	chr17:8424473-8424701(-)$1	228	94	98	12.0000
"ddd	chr9:136654308-136654565(-)$1	257	64	68	12.0000
ssss	chr4:38933832-38934086(+)$1	254	131	135	12.0000
GGG:	chr17:38319785-38320067(+)$1	282	14	18	12.0000
WWWE	chr2:74592550-74592829(-)$1	279	41	45	12.0000
dd::	chr20:34057688-34057910(+)$1	222	53	57	12.0000
:ddd	chr17:40811248-40811468(+)$1	220	56	60	12.0000
wwww	chr21:46363630-46363878(+)$1	248	17	21	12.0000
ccc2	chr20:50255790-50256047(-)$1	257	57	61	12.0000
###b	chr19:57325064-57325304(-)$1	240	41	45	12.0000
yyyb	chrX:19368011-19368282(+)$1	271	95	99	12.0000
d:hh	chr7:74105327-74105543(+)$1	216	80	84	12.0000
DDDD	chr12:12871060-12871327(+)$1	267	30	34	12.0000
ffff	chr22:38699099-38699316(-)$1	217	127	131	12.0000
EEEE	chr16:8891702-8891906(+)$1	204	52	56	12.0000
nndd	chr6:33177621-33177862(+)$1	241	66	70	12.0000
{BBe	chr5:171423811-171424137(-)$1	326	240	244	12.0000
:::b	chr19:10934412-10934674(+)$1	262	96	100	12.0000
[bb%	chr20:20552404-20552638(-)$1	234	80	84	12.0000
HHHb	chr1:150900215-150900493(+)$1	278	231	235	12.0000
hhhh	chr20:39728761-39728983(+)$1	222	194	198	12.0000
FFFF	chr16:86575206-86575523(-)$1	317	7	11	12.0000
E:::	chr2:176812161-176812430(-)$1	269	54	58	12.0000
eee]	chr17:39976137-39976384(+)$1	247	56	60	12.0000
%%%h	chr19:49601798-49602012(+)$1	214	42	46	12.0000
CCC{	chr14:24114280-24114505(+)$1	225	13	17	12.0000
:CCC	chr4:83349431-83349662(-)$1	231	2	6	12.0000
BKKF	chr22:29747592-29747883(-)$1	291	65	69	12.0000
eeee	chr19:2438320-2438626(-)$1	306	130	134	12.0000
bb::	chr22:23980783-23981115(-)$1	332	133	137	12.0000
bccc	chr16:14916723-14916985(-)$1	262	68	72	12.0000
ffff	chr12:96350367-96350644(+)$1	277	124	128	12.0000
EEEE	chr17:65889463-65889713(+)$1	250	183	187	12.0000
DDDD	chr14:23393211-23393468(-)$1	257	152	156	12.0000
GZZZ	chr1:33276090-33276364(-)$1	274	161	165	12.0000
CCCC	chr3:137947718-137947959(+)$1	241	94	98	12.0000
ffff	chr17:43163907-43164122(+)$1	215	78	82	12.0000
iiii	chr17:80442613-80442872(+)$1	259	119	123	12.0000
dd[a	chr1:155823189-155823547(-)$1	358	75	79	12.0000
EEEE	chr20:3146100-3146356(-)$1	256	36	40	12.0000
[ddd	chr6:135318443-135318760(-)$1	317	120	124	12.0000
:::e	chr20:2638478-2638699(+)$1	221	137	141	12.0000
:::e	chr6:117866538-117866853(+)$1	315	98	102	12.0000
ee[b	chr20:43559057-43559275(+)$1	218	13	17	12.0000
eeee	chr17:27060978-27061305(+)$1	327	52	56	12.0000
dddd	chr15:25605429-25605676(-)$1	247	137	141	12.0000
mmbb	chr20:40081357-40081623(-)$1	266	18	22	12.0000
FFFF	chr11:94192474-94192720(-)$1	246	74	78	12.0000
!!ee	chr16:1793349-1793615(+)$1	266	100	104	12.0000
reee	chr4:83348578-83348817(-)$1	239	181	185	12.0000
eeee	chr1:36769506-36769757(+)$1	251	137	141	12.0000
ddDD	chr1:8716008-8716306(-)$1	298	268	272	12.0000
b[ee	chr2:232573139-232573417(+)$1	278	213	217	12.0000
bbmm	chr19:11107083-11107320(+)$1	237	82	86	12.0000
iiii	chr16:1735364-1735625(+)$1	261	88	92	12.0000
:eee	chr17:73237380-73237637(-)$1	257	36	40	12.0000
h::c	chr19:54967867-54968095(+)$1	228	49	53	12.0000
dddd	chr22:45559871-45560172(+)$1	301	55	59	12.0000
22dd	chr1:8616432-8616669(-)$1	237	68	72	12.0000
bb22	chr19:23578061-23578371(-)$1	310	121	125	12.0000
bb]d	chr7:76609851-76610164(+)$1	313	120	124	12.0000
bb]a	chr7:56123301-56123570(+)$1	269	133	137	12.0000
::::	chr12:56561741-56561999(-)$1	258	80	84	12.0000
f!!c	chr9:131347927-131348144(+)$1	217	95	99	12.0000
dd[c	chr19:13051045-13051259(+)$1	214	50	54	12.0000

#DB
(((.	chrX:54954934-54955200(+)$1	1	198	202	12.0000
((((	chr2:74756388-74756598(-)$1	1	18	22	12.0000
...(	chr18:55996153-55996462(+)$1	1	115	119	12.0000
((((	chr12:133253833-133254099(-)$1	1	187	191	12.0000
))))	chr6:31851491-31851704(-)$1	1	193	197	12.0000
))))	chr17:61838225-61838439(-)$1	1	148	152	12.0000
.)))	chr5:95087842-95088108(+)$1	1	208	212	12.0000
....	chr1:21191507-21191771(-)$1	1	84	88	12.0000
((((	chr3:185364683-185364907(-)$1	1	3	7	12.0000
.)))	chr10:116205027-116205265(-)$1	1	11	15	12.0000
....	chr14:56078679-56078972(+)$1	1	287	291	12.0000
((((	chr7:148427171-148427439(+)$1	1	60	64	12.0000
((..	chr1:1562154-1562457(+)$1	1	245	249	12.0000
)(((	chr18:34387761-34388002(-)$1	1	31	35	12.0000
....	chr19:46351995-46352236(-)$1	1	204	208	12.0000
((..	chr19:10791889-10792108(+)$1	1	83	87	12.0000
.)))	chr17:8424473-8424701(-)$1	1	94	98	12.0000
.(((	chr9:136654308-136654565(-)$1	1	64	68	12.0000
....	chr4:38933832-38934086(+)$1	1	131	135	12.0000
(((.	chr17:38319785-38320067(+)$1	1	14	18	12.0000
...(	chr2:74592550-74592829(-)$1	1	41	45	12.0000
))..	chr20:34057688-34057910(+)$1	1	53	57	12.0000
.(((	chr17:40811248-40811468(+)$1	1	56	60	12.0000
....	chr21:46363630-46363878(+)$1	1	17	21	12.0000
))).	chr20:50255790-50256047(-)$1	1	57	61	12.0000
...(	chr19:57325064-57325304(-)$1	1	41	45	12.0000
...)	chrX:19368011-19368282(+)$1	1	95	99	12.0000
).((	chr7:74105327-74105543(+)$1	1	80	84	12.0000
((((	chr12:12871060-12871327(+)$1	1	30	34	12.0000
))))	chr22:38699099-38699316(-)$1	1	127	131	12.0000
((((	chr16:8891702-8891906(+)$1	1	52	56	12.0000
..))	chr6:33177621-33177862(+)$1	1	66	70	12.0000
.(((	chr5:171423811-171424137(-)$1	1	240	244	12.0000
...(	chr19:10934412-10934674(+)$1	1	96	100	12.0000
.((.	chr20:20552404-20552638(-)$1	1	80	84	12.0000
)))(	chr1:150900215-150900493(+)$1	1	231	235	12.0000
))))	chr20:39728761-39728983(+)$1	1	194	198	12.0000
((((	chr16:86575206-86575523(-)$1	1	7	11	12.0000
(...	chr2:176812161-176812430(-)$1	1	54	58	12.0000
))).	chr17:39976137-39976384(+)$1	1	56	60	12.0000
...(	chr19:49601798-49602012(+)$1	1	42	46	12.0000
(((.	chr14:24114280-24114505(+)$1	1	13	17	12.0000
.(((	chr4:83349431-83349662(-)$1	1	2	6	12.0000
(..(	chr22:29747592-29747883(-)$1	1	65	69	12.0000
((((	chr19:2438320-2438626(-)$1	1	130	134	12.0000
))..	chr22:23980783-23981115(-)$1	1	133	137	12.0000
)(((	chr16:14916723-14916985(-)$1	1	68	72	12.0000
))))	chr12:96350367-96350644(+)$1	1	124	128	12.0000
))))	chr17:65889463-65889713(+)$1	1	183	187	12.0000
))))	chr14:23393211-23393468(-)$1	1	152	156	12.0000
)...	chr1:33276090-33276364(-)$1	1	161	165	12.0000
((((	chr3:137947718-137947959(+)$1	1	94	98	12.0000
((((	chr17:43163907-43164122(+)$1	1	78	82	12.0000
))))	chr17:80442613-80442872(+)$1	1	119	123	12.0000
((.(	chr1:155823189-155823547(-)$1	1	75	79	12.0000
((((	chr20:3146100-3146356(-)$1	1	36	40	12.0000
.(((	chr6:135318443-135318760(-)$1	1	120	124	12.0000
...(	chr20:2638478-2638699(+)$1	1	137	141	12.0000
...(	chr6:117866538-117866853(+)$1	1	98	102	12.0000
((.(	chr20:43559057-43559275(+)$1	1	13	17	12.0000
((((	chr17:27060978-27061305(+)$1	1	52	56	12.0000
))))	chr15:25605429-25605676(-)$1	1	137	141	12.0000
..))	chr20:40081357-40081623(-)$1	1	18	22	12.0000
((((	chr11:94192474-94192720(-)$1	1	74	78	12.0000
..((	chr16:1793349-1793615(+)$1	1	100	104	12.0000
.)))	chr4:83348578-83348817(-)$1	1	181	185	12.0000
((((	chr1:36769506-36769757(+)$1	1	137	141	12.0000
))))	chr1:8716008-8716306(-)$1	1	268	272	12.0000
(.((	chr2:232573139-232573417(+)$1	1	213	217	12.0000
((..	chr19:11107083-11107320(+)$1	1	82	86	12.0000
((((	chr16:1735364-1735625(+)$1	1	88	92	12.0000
.(((	chr17:73237380-73237637(-)$1	1	36	40	12.0000
)..(	chr19:54967867-54968095(+)$1	1	49	53	12.0000
((((	chr22:45559871-45560172(+)$1	1	55	59	12.0000
..))	chr1:8616432-8616669(-)$1	1	68	72	12.0000
))..	chr19:23578061-23578371(-)$1	1	121	125	12.0000
)).)	chr7:76609851-76610164(+)$1	1	120	124	12.0000
)).)	chr7:56123301-56123570(+)$1	1	133	137	12.0000
....	chr12:56561741-56561999(-)$1	1	80	84	12.0000
(..(	chr9:131347927-131348144(+)$1	1	95	99	12.0000
((.(	chr19:13051045-13051259(+)$1	1	50	54	12.0000

#PSSM
C : 0.97	c : 0.02	
C : 0.97	c : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_UTR_m1_run2.nuc.txt

#NT
GGGAGCAGGG	chr9:117053054-117053295(+)$1	241	36	46	16.2499
gggggcgggg	chr10:1094606-1094927(-)$1	321	30	40	22.6785
GGGGGUGGGG	chr16:1360052-1360315(+)$1	263	147	157	20.5357
gggggccggg	chr16:1359770-1360039(+)$1	269	16	26	19.8214
gggggccggg	chr16:1359636-1359911(+)$1	275	150	160	19.8214
AGGGGUGGGG	chr14:39736267-39736545(+)$1	278	103	113	18.2142
GGCGGCGGGG	chr12:133405120-133405347(-)$1	227	51	61	18.3928
cggggcgggg	chr1:27022434-27022784(+)$1	350	293	303	20.8928
GGAGGCAGGG	chr16:70695584-70695822(-)$1	238	144	154	15.8928
CGGGGCGGGG	chr20:34252561-34252786(-)$1	225	169	179	20.8928
CGGGGCGUGG	chr9:117052426-117052697(+)$1	271	101	111	16.6071
CGGGGUGGGG	chr2:223726303-223726582(+)$1	279	3	13	18.7499
GGGAGGGGGG	chr7:100424769-100425119(-)$1	350	124	134	15.8928
GGGGGUGGGG	chr1:20237212-20237475(+)$1	263	102	112	20.5357
UGGGGCCGGG	chr12:133404788-133405045(-)$1	257	112	122	17.4999
UGGGGCUGGG	chr16:1361765-1362030(+)$1	265	98	108	17.3214
GCGGGCGGGG	chr1:155658244-155658544(-)$1	300	29	39	18.0357
GGAGGAGGGG	chr7:104752932-104753200(-)$1	268	108	118	15.8928
GGGGGAGUGG	chr20:34252332-34252584(-)$1	252	41	51	15.7142
CGGGGCUGGG	chr2:239356625-239356976(+)$1	351	218	228	17.8571
GGGAGCAGGG	chr9:117053000-117053254(+)$1	254	90	100	16.2499
CGGGGCGGGG	chr10:1094471-1094768(-)$1	297	28	38	20.8928
UGGCGCGGGG	chr11:129148908-129149245(-)$1	337	13	23	16.2499
aggggcgggg	chr11:3013160-3013478(-)$1	318	127	137	20.3571
GGGGGCAGGG	chr6:89791452-89791724(+)$1	272	25	35	19.9999
GGGGGUGGGG	chr8:94752927-94753240(-)$1	313	177	187	20.5357
AGGGGUGGGG	chr14:39736370-39736642(+)$1	272	0	10	18.2142

#otherMatches

#Struct PSSM
uuuuuuuuuu	chr20:57467342-57467612(+)$1	270	237	247	19.9999
=========]	chr9:117053054-117053295(+)$1	241	36	46	16.2499
dmmmmddddG	chr10:1094606-1094927(-)$1	321	30	40	22.6785
bmmmmbb]==	chr16:1360052-1360315(+)$1	263	147	157	20.5357
hhhh[dddd!	chr16:1359770-1360039(+)$1	269	16	26	19.8214
eeebb:dddd	chr16:1359636-1359911(+)$1	275	150	160	19.8214
ddhhhhhhhh	chr14:39736267-39736545(+)$1	278	103	113	18.2142
gg:ffffffh	chr12:133405120-133405347(-)$1	227	51	61	18.3928
eee=======	chr1:27022434-27022784(+)$1	350	293	303	20.8928
00000dddda	chr16:70695584-70695822(-)$1	238	144	154	15.8928
eooooooeee	chr20:34252561-34252786(-)$1	225	169	179	20.8928
fccc]a]ccc	chr9:117052426-117052697(+)$1	271	101	111	16.6071
Bgggggggnn	chr2:223726303-223726582(+)$1	279	3	13	18.7499
JJJJJJJJJJ	chr7:100424769-100425119(-)$1	350	124	134	15.8928
]dddd]hhhh	chr1:20237212-20237475(+)$1	263	102	112	20.5357
2dddd]eeee	chr12:133404788-133405045(-)$1	257	112	122	17.4999
gggg::ffff	chr16:1361765-1362030(+)$1	265	98	108	17.3214
HKKDDDD{A{	chr1:155658244-155658544(-)$1	300	29	39	18.0357
b]bb22ccc4	chr7:104752932-104753200(-)$1	268	108	118	15.8928
G:::ffffff	chr20:34252332-34252584(-)$1	252	41	51	15.7142
a[hhhhhhhh	chr2:239356625-239356976(+)$1	351	218	228	17.8571
=========]	chr9:117053000-117053254(+)$1	254	90	100	16.2499
e"""eeeee!	chr10:1094471-1094768(-)$1	297	28	38	20.8928
BKKDDDD{AL	chr11:129148908-129149245(-)$1	337	13	23	16.2499
mmmmbb333e	chr11:3013160-3013478(-)$1	318	127	137	20.3571
g[eeeee[a"	chr6:89791452-89791724(+)$1	272	25	35	19.9999
EEE}A:FFFF	chr8:94752927-94753240(-)$1	313	177	187	20.5357
::::::::EE	chr14:39736370-39736642(+)$1	272	0	10	18.2142

#DB
..........	chr20:57467342-57467612(+)$1	1	237	247	19.9999
))))))))).	chr9:117053054-117053295(+)$1	1	36	46	16.2499
(....)))))	chr10:1094606-1094927(-)$1	1	30	40	22.6785
(....)).))	chr16:1360052-1360315(+)$1	1	147	157	20.5357
((((.((((.	chr16:1359770-1360039(+)$1	1	16	26	19.8214
))))).((((	chr16:1359636-1359911(+)$1	1	150	160	19.8214
))))))))))	chr14:39736267-39736545(+)$1	1	103	113	18.2142
)).(((((((	chr12:133405120-133405347(-)$1	1	51	61	18.3928
))))))))))	chr1:27022434-27022784(+)$1	1	293	303	20.8928
.....)))))	chr16:70695584-70695822(-)$1	1	144	154	15.8928
(......)))	chr20:34252561-34252786(-)$1	1	169	179	20.8928
)))).).)))	chr9:117052426-117052697(+)$1	1	101	111	16.6071
((((((((..	chr2:223726303-223726582(+)$1	1	3	13	18.7499
))))))))))	chr7:100424769-100425119(-)$1	1	124	134	15.8928
.)))).))))	chr1:20237212-20237475(+)$1	1	102	112	20.5357
.)))).))))	chr12:133404788-133405045(-)$1	1	112	122	17.4999
))))..((((	chr16:1361765-1362030(+)$1	1	98	108	17.3214
(..((((.(.	chr1:155658244-155658544(-)$1	1	29	39	18.0357
).))..))).	chr7:104752932-104753200(-)$1	1	108	118	15.8928
(...((((((	chr20:34252332-34252584(-)$1	1	41	51	15.7142
(.((((((((	chr2:239356625-239356976(+)$1	1	218	228	17.8571
))))))))).	chr9:117053000-117053254(+)$1	1	90	100	16.2499
(...(((((.	chr10:1094471-1094768(-)$1	1	28	38	20.8928
(..((((.(.	chr11:129148908-129149245(-)$1	1	13	23	16.2499
....))...)	chr11:3013160-3013478(-)$1	1	127	137	20.3571
(.(((((.(.	chr6:89791452-89791724(+)$1	1	25	35	19.9999
))).).((((	chr8:94752927-94753240(-)$1	1	177	187	20.5357
........((	chr14:39736370-39736642(+)$1	1	0	10	18.2142

#PSSM
G : 0.46	C : 0.17	g : 0.10	U : 0.10	A : 0.07	c : 0.03	a : 0.03	
G : 0.78	g : 0.17	C : 0.03	
G : 0.71	g : 0.17	A : 0.07	C : 0.03	
G : 0.67	g : 0.17	A : 0.10	C : 0.03	
G : 0.82	g : 0.17	
C : 0.46	U : 0.21	c : 0.17	A : 0.10	G : 0.03	
G : 0.57	A : 0.14	g : 0.10	c : 0.07	U : 0.07	C : 0.03	
G : 0.74	g : 0.17	U : 0.07	
G : 0.82	g : 0.17	
G : 0.82	g : 0.17	

#score	519.9999999999997
#seq	28
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_CDS_m1_run2.nuc.txt

#NT
gcggaggcggcgguggccgcuacuacggcggcggcagugagggcggcCGGGCCCCUAAGCGGCUCAAGACUGACAACGCCGGCGACCAGCAcggaggcggcggcgguggcgguggaggagccggggcggcgggcggcggcggcgguggGGUGAGGCCA	chr19:39340237-39340490(-)$1	253	2	160	256.5000
gccgccgccccgggcccccccgcAUCGCGCCGCCCAAGCUGGCCUGCCGCACCCCCAGCCCCGCCAGGCCCGCACUCCGCGCCCCGGCCUCCGCUACCAGUGGCAGCCGCAAgcgcgcccgcccgcccgccgcccccggACGCGACCAGGCCAGGCCA	chr16:88870232-88870536(+)$1	304	41	199	256.5000
gccgccgccccgggcccccccgcAUCGCGCCGCCCAAGCUGGCCUGCCGCACCCCCAGCCCCGCCAGGCCCGCACUCCGCGCCCCGGCCUCCGCUACCAGUGGCAGCCGCAAgcgcgcccgcccgcccgccgcccccggACGCGACCAGGCCAGGCCA	chr16:88870148-88870432(+)$1	284	125	283	256.5000

#otherMatches

#Struct PSSM
bb!!ccc[ccc!!hhhhhhhh!!ccc[bbmmmmbb]ccc22hhhhhhhh]cccccc22bb]dddd::::bb!!bb[eeeee[bb[bb[bb[bbmmmmbbbbbbbb]eeeee]bb22bb::JJJJJJJJJJJJ}AYYA}EEEEE::ffffffrrrrrrr	chr19:39340321-39340607(-)$1	286	119	277	256.5000
DDDLLLCCC{CCC{DDDD{BB:dddd[bb[bb[bb''''''''bb[ccc[eeeee$$$$$eeeee"""dddd[bb[eeeee[bb[bbqqqqqqqqbbbb]eeeee]bb]dddd4444eeeeeeeeee22ccc]bbbb]bb]bb]ddddccc####ddd	chr19:39340237-39340490(-)$1	253	2	160	256.5000
dd:CCC{IIIIIIIIIAFFFFFF:::ccca[cccooooooccc22a]ccc::GGGGGGG{BB{BB{DDDDBBKKJJJJJJJJJJJ{EEEEEKKEEEEE:eeeee[ccc$$$$$dddd[ccc"""bbnnnnnbb333ccc]dddd4444ccc333eeee	chr16:88870232-88870536(+)$1	304	41	199	256.5000
dd:cccooooooccc:::EEEEEZZZEEEEEbbmmmmbbggggggg[ccc!!bb"""bb"""bb!!ccc!!bb####eeeee!!dddd!!eeeeellleeeee22dddd333eeeee333bb22ccc]bb]bb4444bb22ccc22gggggggDDDD:	chr16:88870148-88870432(+)$1	284	125	283	256.5000

#DB
((..(((.(((..((((((((..(((.((....)).)))..)))))))).))))))..)).))))....((..((.(((((.((.((.((.((....)))))))).))))).))..))..)))))))))))).)..).)))))..((((((.......	chr19:39340321-39340607(-)$1	1	119	277	256.5000
(((...(((.(((.((((.((.((((.((.((.((........((.(((.(((((.....(((((...((((.((.(((((.((.((........)))).))))).)).))))....))))))))))..))).)))).)).)).))))(((....(((	chr19:39340237-39340490(-)$1	1	2	160	256.5000
)).(((.((((((((((((((((...((((.(((......)))..).)))..(((((((.((.((.((((((..(((((((((((.(((((..(((((.(((((.(((.....((((.(((...((.....))...))).))))....)))...))))	chr16:88870232-88870536(+)$1	1	41	199	256.5000
)).(((......)))...)))))...)))))((....))(((((((.(((..((...((...((..(((..((....(((((..((((..(((((...)))))..))))...)))))...))..))).)).))....))..)))..))))))))))).	chr16:88870148-88870432(+)$1	1	125	283	256.5000

#PSSM
g : 1.00	
c : 1.00	
g : 0.50	c : 0.50	
g : 1.00	
a : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
c : 1.00	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 1.00	
g : 1.00	
g : 1.00	
u : 0.50	g : 0.50	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 1.00	
c : 1.00	
g : 0.50	c : 0.50	
c : 1.00	
u : 0.50	c : 0.50	
a : 0.50	g : 0.50	
c : 1.00	
u : 0.50	A : 0.50	
a : 0.50	U : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	A : 0.50	
u : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
C : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	U : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	A : 0.50	
u : 0.50	g : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
a : 0.50	c : 0.50	
g : 1.00	
g : 0.50	c : 0.50	
a : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 0.50	g : 0.50	
c : 1.00	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
g : 0.50	c : 0.50	
c : 1.00	
g : 0.50	c : 0.50	
g : 1.00	
c : 1.00	
g : 0.50	c : 0.50	
g : 1.00	
g : 0.50	c : 0.50	
c : 1.00	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
c : 1.00	
g : 1.00	
g : 1.00	
c : 0.50	A : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
u : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	

#score	1026.0
#seq	4
#width	158
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_transcript_m1_run1.nuc.txt

#NT
UCCAUGCCCAUGAGCUGAAGUGGUCUGGCGUGUUGUGCACACGCACACUCAAGUUCUUGACACCCACCUGUGUUUUGUGUCCCUGUUUCAGGUGGAGGUGGAGGAAGCGUCCCUGGGAUCGAGAGGAUGGGUCCUGGCAUUGACCGCCUCGGGGGUGCCGGCAUGGAGCGCAUGGGCGCGGGCCUGGGCCACGGCAUGGAUCGCGUGGGCUCCGAGAUCGAGCGCAUGGGCCUGGUCAUGGACCGCAUGGGCUCCGUGGAGCGCAUGGGCUCCGGCAUUGAGCGCAUGGGCCCGCUGGG	chr19:8550381-8550702(+)$1	321	14	313	384.5000

#otherMatches

#Struct PSSM
gggggqqqqqqqqggggggg:::EEEEEDDDDiiiiiiiiimmmmiiiiiiiiiiiiiiiiii"""bb[dddd"""cccccc[a[ffffff!!hhhhhhhh"""bb!!ffffff[bb[eeeee!!cccrrrrrrrrrccc333eeeee]bb]ffffff22bb]hhhhhhhh55555ffffff]accc]ccc333dddd]bb]iiiiiiiii::::::eeeeeooooooeeeee::::::::::::::::::::::ddddpppppppdddd:DDDDYYEEEEE:cccmmmmccc======	chr12:113744202-113744555(-)$1	353	12	311	384.5000
HHHHHHHHbb[eeeee!!dddd$$$$$ffffffnnnnnffffff]dddd22eeeee]bbbb!!ggggggg^^^^^^^^^^^^^^^^^^ggggggg22bb::dddd!!eeeeebb[allla]bb]eeeee22ddddffffff!!ccclllccc]ffffffHHHHHHHHZZZBB}CCC:hhhhhhhha[bbbb!!bb[dddd[a[dddd[ffffff[a"""dddd[ddddbbbbpppppppbb]bb]dddd]dddda]ffffff]dddd]a]ddddbb22bb]bb]a22hhhhhhhh:DDD	chr19:8550381-8550702(+)$1	321	14	313	384.5000

#DB
(((((........)))))))...((((((((((((((((((....)))))))))(((((((((...((.((((...((((((.(.((((((..((((((((...((..((((((.((.(((((..(((.........)))...))))).)).))))))..)).)))))))).....)))))).)))).)))...)))).)).)))))))))......(((((......)))))......................((((.......)))).))))..))))).(((....)))((((((	chr12:113744202-113744555(-)$1	1	12	311	384.5000
((((((((((.(((((..((((.....((((((.....)))))).))))..))))).))((..(((((((..................)))))))..))..((((..(((((((.(...).)).)))))..))))((((((..(((...))).))))))))))))))...)).))).(((((((((.((((..((.((((.(.((((.((((((.(...((((.((((((((.......)).)).)))).))))).)))))).)))).).))))))..)).)).)..)))))))).)))	chr19:8550381-8550702(+)$1	1	14	313	384.5000

#PSSM
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	

#score	769.0
#seq	2
#width	299
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_UTR_m2_run1.nuc.txt

#NT
UAAAUAAA	chr5:177635634-177635914(-)$1	280	249	257	16.2307
AAAAUAAA	chr11:86656650-86656892(-)$1	242	151	159	20.1538
AAAAUAAA	chr10:7791236-7791475(+)$1	239	225	233	20.1538
AAAAUGAA	chr2:188343227-188343495(-)$1	268	239	247	16.0769
AAAAUAAG	chr18:673916-674211(-)$1	295	204	212	15.7692
AACAUAAA	chr6:17615409-17615676(-)$1	267	44	52	15.3846
AAAAUUAA	chr17:61896398-61896657(+)$1	259	42	50	15.8461
aaaauaua	chr16:16236676-16236984(+)$1	308	216	224	15.3846
AAAAUAAU	chr21:34106412-34106651(-)$1	239	63	71	15.8461
aaaauaaa	chr16:28848288-28848538(+)$1	250	232	240	20.1538
AAAAUAAG	chr12:131625771-131626089(+)$1	318	126	134	15.7692
AAAAUGAA	chr21:34949422-34949690(+)$1	268	38	46	16.0769
AAAAUAAU	chr21:34106578-34106860(-)$1	282	272	280	15.8461
AAAAUAAA	chr1:55532031-55532341(-)$1	310	287	295	20.1538
ACAAUAAA	chr12:30862587-30862843(-)$1	256	25	33	16.1538
uAAAUAAA	chr1:18024058-18024383(+)$1	325	239	247	16.2307
aaaaaaaa	chr17:25640403-25640649(+)$1	246	61	69	16.4615
GAAAUAAA	chr21:46932320-46932571(+)$1	251	136	144	15.9999
AAAAUGAA	chr3:120346940-120347188(-)$1	248	55	63	16.0769
AAAAAAAA	chr2:55199923-55200147(-)$1	224	200	208	16.4615
GAAAUAAA	chr3:156865508-156865812(-)$1	304	197	205	15.9999
AAAUUAAA	chr3:42689975-42690223(+)$1	248	227	235	15.3076
AAAACAAA	chr11:47738072-47738354(-)$1	282	61	69	16.2307
CAAAUAAA	chr13:33091761-33092022(-)$1	261	163	171	15.9999
AAAAUAAA	chr14:53194296-53194589(+)$1	293	88	96	20.1538
AUAAUAAA	chr4:123283651-123283979(+)$1	328	230	238	16.5384
AUAAUAAA	chr4:99993238-99993511(-)$1	273	182	190	16.5384
aaaaaaaa	chr9:117073826-117074085(+)$1	259	2	10	16.4615
AAAAGAAA	chr19:46318623-46318889(-)$1	266	156	164	16.4615
UAAAUAAA	chr14:75548810-75549104(-)$1	294	258	266	16.2307
AAAAUAAA	chr9:14737115-14737418(-)$1	303	243	251	20.1538
AGAAUAAA	chr10:93789877-93790156(+)$1	279	176	184	16.1538
AUAAUAAA	chr5:96110126-96110391(-)$1	265	176	184	16.5384
AUAAUAAA	chr5:118877766-118878074(+)$1	308	162	170	16.5384
AUAAUAAA	chr6:158519834-158520084(+)$1	250	165	173	16.5384
ACAAUAAA	chr17:1680649-1680865(+)$1	216	186	194	16.1538
CAAAUAAA	chr13:33091676-33091961(-)$1	285	102	110	15.9999
aaaaaaaa	chr19:7116090-7116361(-)$1	271	212	220	16.4615
AAAAUAAA	chr6:159056205-159056458(+)$1	253	45	53	20.1538
AAAAUAAU	chr14:50885379-50885672(-)$1	293	42	50	15.8461
AAAACAAA	chr10:28909387-28909622(+)$1	235	71	79	16.2307
AAAAUAAA	chr19:18499850-18500081(+)$1	231	113	121	20.1538
AAAAUAAA	chr18:211209-211495(+)$1	286	105	113	20.1538
aaaaaaaa	chr3:37030253-37030497(-)$1	244	1	9	16.4615
AAAAUAAA	chr2:216903085-216903357(-)$1	272	59	67	20.1538
AAAAUAAA	chr2:220074112-220074390(+)$1	278	225	233	20.1538
AAAAUAGA	chr15:44854931-44855223(-)$1	292	81	89	15.3846
UAAAUAAA	chr4:69794251-69794496(-)$1	245	140	148	16.2307
AUAAUAAA	chr5:72848158-72848498(-)$1	340	28	36	16.5384
AAAAUAAA	chr2:61704995-61705270(-)$1	275	179	187	20.1538
aaaauaaa	chr10:101611352-101611593(+)$1	241	189	197	20.1538
AAAAUUAA	chr13:113541243-113541538(+)$1	295	33	41	15.8461
AAAAUGAA	chr1:70716699-70716910(+)$1	211	48	56	16.0769
AAAAUAAC	chr5:314924-315184(+)$1	260	50	58	15.6923
AAAAUAAA	chr6:159056146-159056405(+)$1	259	104	112	20.1538
AGAAUAAA	chr19:1009560-1009808(-)$1	248	133	141	16.1538
AAUAUAAA	chr12:103232375-103232605(-)$1	230	62	70	15.3846
AAAAUGAA	chr1:25568657-25568912(-)$1	255	94	102	16.0769
AAAAGAAA	chr16:20808210-20808562(+)$1	352	42	50	16.4615
AAAAGAAA	chr11:34493278-34493562(+)$1	284	73	81	16.4615
AAAAGAAA	chr2:178094949-178095241(-)$1	292	54	62	16.4615
AUAAUAAA	chr2:153506177-153506424(+)$1	247	140	148	16.5384
UAAAUAAA	chr2:26360025-26360304(+)$1	279	233	241	16.2307
AAAAUAAA	chr2:167051612-167051869(-)$1	257	166	174	20.1538

#otherMatches

#Struct PSSM
::::::::	chr9:117073659-117073905(+)$1	246	151	159	16.4615
h:::::::	chr5:177635634-177635914(-)$1	280	249	257	16.2307
00000000	chr11:86656650-86656892(-)$1	242	151	159	20.1538
::::::::	chr10:7791236-7791475(+)$1	239	225	233	20.1538
c"""ccco	chr2:188343227-188343495(-)$1	268	239	247	16.0769
:::::::d	chr18:673916-674211(-)$1	295	204	212	15.7692
ff"""ggg	chr6:17615409-17615676(-)$1	267	44	52	15.3846
ee((((((	chr17:61896398-61896657(+)$1	259	42	50	15.8461
========	chr16:16236676-16236984(+)$1	308	216	224	15.3846
eee:::::	chr21:34106412-34106651(-)$1	239	63	71	15.8461
fff]dddd	chr16:28848288-28848538(+)$1	250	232	240	20.1538
dsssssss	chr12:131625771-131626089(+)$1	318	126	134	15.7692
ffffff!!	chr21:34949422-34949690(+)$1	268	38	46	16.0769
B}CCC:::	chr21:34106578-34106860(-)$1	282	272	280	15.8461
::::::::	chr1:55532031-55532341(-)$1	310	287	295	20.1538
gghhhhhh	chr12:30862587-30862843(-)$1	256	25	33	16.1538
iirrrrrr	chr1:18024058-18024383(+)$1	325	239	247	16.2307
::::::::	chr17:25640403-25640649(+)$1	246	61	69	16.4615
++++hhhh	chr21:46932320-46932571(+)$1	251	136	144	15.9999
"""ggggg	chr3:120346940-120347188(-)$1	248	55	63	16.0769
::::::::	chr2:55199923-55200147(-)$1	224	200	208	16.4615
yyyyyyyy	chr3:156865508-156865812(-)$1	304	197	205	15.9999
GG::::::	chr3:42689975-42690223(+)$1	248	227	235	15.3076
mmdddd::	chr11:47738072-47738354(-)$1	282	61	69	16.2307
hhh:::::	chr13:33091761-33092022(-)$1	261	163	171	15.9999
nneeeee:	chr14:53194296-53194589(+)$1	293	88	96	20.1538
iiuuuuuu	chr4:123283651-123283979(+)$1	328	230	238	16.5384
]ggggggg	chr4:99993238-99993511(-)$1	273	182	190	16.5384
::::::::	chr9:117073826-117074085(+)$1	259	2	10	16.4615
^^^^^^^^	chr19:46318623-46318889(-)$1	266	156	164	16.4615
nnnnneee	chr14:75548810-75549104(-)$1	294	258	266	16.2307
::::::::	chr9:14737115-14737418(-)$1	303	243	251	20.1538
bb####cc	chr10:93789877-93790156(+)$1	279	176	184	16.1538
qqqqqqqd	chr5:96110126-96110391(-)$1	265	176	184	16.5384
NNIIIIII	chr5:118877766-118878074(+)$1	308	162	170	16.5384
@@@@@@@@	chr6:158519834-158520084(+)$1	250	165	173	16.5384
::::::DD	chr17:1680649-1680865(+)$1	216	186	194	16.1538
hhh88888	chr13:33091676-33091961(-)$1	285	102	110	15.9999
::::::::	chr19:7116090-7116361(-)$1	271	212	220	16.4615
iiii::::	chr6:159056205-159056458(+)$1	253	45	53	20.1538
tttttttt	chr14:50885379-50885672(-)$1	293	42	50	15.8461
oooooodd	chr10:28909387-28909622(+)$1	235	71	79	16.2307
ff]ccc]b	chr19:18499850-18500081(+)$1	231	113	121	20.1538
d[gggggg	chr18:211209-211495(+)$1	286	105	113	20.1538
:::::::J	chr3:37030253-37030497(-)$1	244	1	9	16.4615
rrrrrrrd	chr2:216903085-216903357(-)$1	272	59	67	20.1538
:eeeee%%	chr2:220074112-220074390(+)$1	278	225	233	20.1538
GGG{DDDD	chr15:44854931-44855223(-)$1	292	81	89	15.3846
hhhh%%%%	chr4:69794251-69794496(-)$1	245	140	148	16.2307
JJJJJJKK	chr5:72848158-72848498(-)$1	340	28	36	16.5384
e22ccc22	chr2:61704995-61705270(-)$1	275	179	187	20.1538
::::::GG	chr10:101611352-101611593(+)$1	241	189	197	20.1538
D:ffffff	chr13:113541243-113541538(+)$1	295	33	41	15.8461
pppdddd:	chr1:70716699-70716910(+)$1	211	48	56	16.0769
::::::CC	chr5:314924-315184(+)$1	260	50	58	15.6923
iiii::::	chr6:159056146-159056405(+)$1	259	104	112	20.1538
ggggg:::	chr19:1009560-1009808(-)$1	248	133	141	16.1538
:::eeeee	chr12:103232375-103232605(-)$1	230	62	70	15.3846
ffffoooo	chr1:25568657-25568912(-)$1	255	94	102	16.0769
::IIIIII	chr16:20808210-20808562(+)$1	352	42	50	16.4615
:::eeeee	chr11:34493278-34493562(+)$1	284	73	81	16.4615
44dddd::	chr2:178094949-178095241(-)$1	292	54	62	16.4615
rrrccc22	chr2:153506177-153506424(+)$1	247	140	148	16.5384
CC}EEEEE	chr2:26360025-26360304(+)$1	279	233	241	16.2307
nnndddd2	chr2:167051612-167051869(-)$1	257	166	174	20.1538

#DB
........	chr9:117073659-117073905(+)$1	1	151	159	16.4615
).......	chr5:177635634-177635914(-)$1	1	249	257	16.2307
........	chr11:86656650-86656892(-)$1	1	151	159	20.1538
........	chr10:7791236-7791475(+)$1	1	225	233	20.1538
(...(((.	chr2:188343227-188343495(-)$1	1	239	247	16.0769
.......(	chr18:673916-674211(-)$1	1	204	212	15.7692
((...(((	chr6:17615409-17615676(-)$1	1	44	52	15.3846
((......	chr17:61896398-61896657(+)$1	1	42	50	15.8461
((((((((	chr16:16236676-16236984(+)$1	1	216	224	15.3846
))).....	chr21:34106412-34106651(-)$1	1	63	71	15.8461
))).))))	chr16:28848288-28848538(+)$1	1	232	240	20.1538
(.......	chr12:131625771-131626089(+)$1	1	126	134	15.7692
((((((..	chr21:34949422-34949690(+)$1	1	38	46	16.0769
).)))...	chr21:34106578-34106860(-)$1	1	272	280	15.8461
........	chr1:55532031-55532341(-)$1	1	287	295	20.1538
))((((((	chr12:30862587-30862843(-)$1	1	25	33	16.1538
((......	chr1:18024058-18024383(+)$1	1	239	247	16.2307
........	chr17:25640403-25640649(+)$1	1	61	69	16.4615
....((((	chr21:46932320-46932571(+)$1	1	136	144	15.9999
...(((((	chr3:120346940-120347188(-)$1	1	55	63	16.0769
........	chr2:55199923-55200147(-)$1	1	200	208	16.4615
........	chr3:156865508-156865812(-)$1	1	197	205	15.9999
))......	chr3:42689975-42690223(+)$1	1	227	235	15.3076
..))))..	chr11:47738072-47738354(-)$1	1	61	69	16.2307
))).....	chr13:33091761-33092022(-)$1	1	163	171	15.9999
..))))).	chr14:53194296-53194589(+)$1	1	88	96	20.1538
((......	chr4:123283651-123283979(+)$1	1	230	238	16.5384
.)))))))	chr4:99993238-99993511(-)$1	1	182	190	16.5384
........	chr9:117073826-117074085(+)$1	1	2	10	16.4615
........	chr19:46318623-46318889(-)$1	1	156	164	16.4615
.....)))	chr14:75548810-75549104(-)$1	1	258	266	16.2307
........	chr9:14737115-14737418(-)$1	1	243	251	20.1538
((....((	chr10:93789877-93790156(+)$1	1	176	184	16.1538
.......)	chr5:96110126-96110391(-)$1	1	176	184	16.5384
..((((((	chr5:118877766-118878074(+)$1	1	162	170	16.5384
........	chr6:158519834-158520084(+)$1	1	165	173	16.5384
......))	chr17:1680649-1680865(+)$1	1	186	194	16.1538
))).....	chr13:33091676-33091961(-)$1	1	102	110	15.9999
........	chr19:7116090-7116361(-)$1	1	212	220	16.4615
))))....	chr6:159056205-159056458(+)$1	1	45	53	20.1538
........	chr14:50885379-50885672(-)$1	1	42	50	15.8461
......))	chr10:28909387-28909622(+)$1	1	71	79	16.2307
)).))).)	chr19:18499850-18500081(+)$1	1	113	121	20.1538
(.((((((	chr18:211209-211495(+)$1	1	105	113	20.1538
.......(	chr3:37030253-37030497(-)$1	1	1	9	16.4615
.......)	chr2:216903085-216903357(-)$1	1	59	67	20.1538
.(((((..	chr2:220074112-220074390(+)$1	1	225	233	20.1538
(((.((((	chr15:44854931-44855223(-)$1	1	81	89	15.3846
((((....	chr4:69794251-69794496(-)$1	1	140	148	16.2307
((((((..	chr5:72848158-72848498(-)$1	1	28	36	16.5384
)..)))..	chr2:61704995-61705270(-)$1	1	179	187	20.1538
......))	chr10:101611352-101611593(+)$1	1	189	197	20.1538
(.((((((	chr13:113541243-113541538(+)$1	1	33	41	15.8461
...)))).	chr1:70716699-70716910(+)$1	1	48	56	16.0769
......((	chr5:314924-315184(+)$1	1	50	58	15.6923
))))....	chr6:159056146-159056405(+)$1	1	104	112	20.1538
)))))...	chr19:1009560-1009808(-)$1	1	133	141	16.1538
...(((((	chr12:103232375-103232605(-)$1	1	62	70	15.3846
((((....	chr1:25568657-25568912(-)$1	1	94	102	16.0769
..((((((	chr16:20808210-20808562(+)$1	1	42	50	16.4615
...(((((	chr11:34493278-34493562(+)$1	1	73	81	16.4615
..))))..	chr2:178094949-178095241(-)$1	1	54	62	16.4615
...)))..	chr2:153506177-153506424(+)$1	1	140	148	16.5384
)).)))))	chr2:26360025-26360304(+)$1	1	233	241	16.2307
...)))).	chr2:167051612-167051869(-)$1	1	166	174	20.1538

#PSSM
A : 0.73	a : 0.12	U : 0.06	G : 0.03	C : 0.03	u : 0.01	
A : 0.70	a : 0.12	U : 0.10	C : 0.03	G : 0.03	
A : 0.84	a : 0.12	C : 0.01	U : 0.01	
A : 0.86	a : 0.12	U : 0.01	
U : 0.76	a : 0.06	G : 0.06	u : 0.04	C : 0.03	g : 0.01	A : 0.01	
A : 0.76	a : 0.12	G : 0.07	U : 0.03	
A : 0.86	a : 0.10	u : 0.01	G : 0.01	
A : 0.78	a : 0.12	U : 0.04	G : 0.03	C : 0.01	

#score	1108.6153846153838
#seq	65
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_transcript_m2_run1.nuc.txt

#NT
CUG	chr14:105954488-105954696(+)$1	208	0	3	9.0000
CUG	chr15:44063463-44063703(+)$1	240	78	81	9.0000
CUG	chr14:105225800-105226045(+)$1	245	0	3	9.0000
CUG	chr14:65405952-65406240(-)$1	288	0	3	9.0000
CUG	chr19:49119055-49119272(-)$1	217	0	3	9.0000
CUG	chr5:176524281-176524494(+)$1	213	18	21	9.0000
CUG	chr19:12924129-12924382(+)$1	253	115	118	9.0000
CUG	chr4:120219604-120219824(-)$1	220	137	140	9.0000
CUG	chr6:33243641-33243845(+)$1	204	8	11	9.0000
cug	chr6:44201611-44201923(+)$1	312	7	10	9.0000
CUG	chr6:160199656-160199978(+)$1	322	83	86	9.0000
CUG	chr7:143087758-143088032(+)$1	274	13	16	9.0000
CUG	chr11:116706652-116706870(-)$1	218	14	17	9.0000
CUG	chr11:17096935-17097150(-)$1	215	73	76	9.0000
CUG	chr6:144416218-144416469(-)$1	251	92	95	9.0000
CUG	chr14:105954979-105955209(+)$1	230	2	5	9.0000
CUG	chr3:50325187-50325443(-)$1	256	2	5	9.0000
CUG	chr2:129023719-129023992(-)$1	273	118	121	9.0000
CUG	chr16:30087537-30087776(+)$1	239	66	69	9.0000
CUG	chr20:4680621-4680892(+)$1	271	18	21	9.0000
CUG	chr14:95090143-95090352(+)$1	209	57	60	9.0000
CUG	chr22:24963972-24964240(+)$1	268	24	27	9.0000
CUG	chr6:34212609-34212839(+)$1	230	66	69	9.0000
CUG	chr5:135398992-135399286(+)$1	294	126	129	9.0000
CUG	chr2:113346376-113346656(+)$1	280	18	21	9.0000
CUG	chr19:8376199-8376532(-)$1	333	11	14	9.0000
CUG	chr9:140446746-140447001(+)$1	255	79	82	9.0000
CUG	chr8:27455516-27455763(-)$1	247	40	43	9.0000
CUG	chr19:2272952-2273244(+)$1	292	168	171	9.0000
CUG	chr2:219679702-219679922(+)$1	220	0	3	9.0000
CUG	chr12:104341553-104341782(+)$1	229	92	95	9.0000
CUG	chr17:40125944-40126171(+)$1	227	54	57	9.0000
CUG	chr13:113977553-113977768(+)$1	215	36	39	9.0000
CUG	chr22:50941641-50941932(-)$1	291	39	42	9.0000
CUG	chr17:76168155-76168419(+)$1	264	4	7	9.0000
CUG	chr10:102745990-102746232(-)$1	242	57	60	9.0000
CUG	chr1:43392255-43392473(-)$1	218	7	10	9.0000
CUG	chr16:29869619-29869860(-)$1	241	20	23	9.0000
CUG	chr16:56642421-56642695(+)$1	274	53	56	9.0000
CUG	chr16:1375068-1375324(+)$1	256	52	55	9.0000
CUG	chr7:26232031-26232278(-)$1	247	12	15	9.0000
CUG	chr11:66044693-66044939(+)$1	246	1	4	9.0000
CUG	chr20:60711731-60711982(-)$1	251	11	14	9.0000
CUG	chr1:54683791-54684046(+)$1	255	4	7	9.0000
CUG	chr19:47112295-47112540(+)$1	245	46	49	9.0000
CUG	chr1:150594820-150595065(-)$1	245	82	85	9.0000
CUG	chr2:201950095-201950367(+)$1	272	136	139	9.0000
CUG	chr14:24608015-24608259(+)$1	244	27	30	9.0000
CUG	chr22:19949972-19950335(+)$1	363	28	31	9.0000
CUG	chr2:25013055-25013321(-)$1	266	42	45	9.0000
CUG	chr5:167945995-167946260(+)$1	265	122	125	9.0000
CUG	chr19:15226711-15226971(-)$1	260	6	9	9.0000
CUG	chr3:129023645-129023897(+)$1	252	53	56	9.0000
CUG	chr20:48740674-48740937(-)$1	263	2	5	9.0000
CUG	chr6:30711302-30711538(-)$1	236	29	32	9.0000
CUG	chr1:8037654-8037894(+)$1	240	25	28	9.0000
CUG	chrX:48689439-48689669(-)$1	230	3	6	9.0000
CUG	chr20:34287582-34287785(+)$1	203	13	16	9.0000
CUG	chr20:61303387-61303656(+)$1	269	4	7	9.0000
CUG	chr8:145637724-145638040(-)$1	316	38	41	9.0000
CUG	chr19:6368598-6368886(+)$1	288	21	24	9.0000
CUG	chr1:87328459-87328707(-)$1	248	69	72	9.0000
CUG	chr16:18800323-18800535(-)$1	212	42	45	9.0000
CUG	chr9:19376199-19376441(-)$1	242	30	33	9.0000
CUG	chr11:116703499-116703721(+)$1	222	8	11	9.0000
CUG	chr2:130947941-130948149(+)$1	208	47	50	9.0000
CUG	chr11:62557505-62557789(+)$1	284	10	13	9.0000
CUG	chr6:31237642-31237848(-)$1	206	28	31	9.0000
CUG	chr17:7004618-7004861(-)$1	243	3	6	9.0000
CUG	chr1:9910327-9910598(-)$1	271	45	48	9.0000
CUG	chr14:105954939-105955165(+)$1	226	24	27	9.0000
CUG	chr16:5075041-5075282(-)$1	241	10	13	9.0000
CUG	chr8:30423670-30423910(+)$1	240	12	15	9.0000
CUG	chr11:47591150-47591528(+)$1	378	20	23	9.0000
CUG	chr1:55530315-55530597(+)$1	282	12	15	9.0000
CUG	chr11:63743758-63744010(+)$1	252	7	10	9.0000
CUG	chr4:74285252-74285456(+)$1	204	20	23	9.0000
CUG	chr9:116822446-116822650(-)$1	204	19	22	9.0000
CUG	chr17:7215064-7215316(+)$1	252	5	8	9.0000
CUG	chr19:36149396-36149621(+)$1	225	68	71	9.0000
CUG	chr16:28995451-28995784(+)$1	333	0	3	9.0000
CUG	chr19:4037248-4037469(+)$1	221	6	9	9.0000
CUG	chr3:52023012-52023275(+)$1	263	31	34	9.0000
CUG	chr8:146015136-146015359(-)$1	223	2	5	9.0000
CUG	chr4:74286777-74287012(+)$1	235	80	83	9.0000
CUG	chr20:3019047-3019344(+)$1	297	131	134	9.0000
CUG	chr14:23080568-23080861(+)$1	293	14	17	9.0000
CUG	chr16:69744639-69744887(-)$1	248	20	23	9.0000
CUG	chr19:18642773-18643075(-)$1	302	28	31	9.0000
CUG	chr8:99057497-99057719(-)$1	222	67	70	9.0000
CUG	chr15:44085807-44086020(+)$1	213	40	43	9.0000
CUG	chr20:48741023-48741263(-)$1	240	39	42	9.0000
CUG	chr16:1749167-1749429(+)$1	262	11	14	9.0000
CUG	chr19:58899477-58899704(+)$1	227	6	9	9.0000
CUG	chr12:56537798-56538075(+)$1	277	32	35	9.0000
CUG	chr11:116706480-116706695(-)$1	215	4	7	9.0000
CUG	chr11:118916028-118916285(-)$1	257	70	73	9.0000
CUG	chr20:35025035-35025317(+)$1	282	119	122	9.0000
CUG	chr11:75283195-75283461(+)$1	266	79	82	9.0000

#otherMatches

#Struct PSSM
{BB	chr14:95035964-95036287(+)$1	323	20	23	9.0000
::e	chr14:105954488-105954696(+)$1	208	0	3	9.0000
ddd	chr15:44063463-44063703(+)$1	240	78	81	9.0000
::D	chr14:105225800-105226045(+)$1	245	0	3	9.0000
:::	chr14:65405952-65406240(-)$1	288	0	3	9.0000
::h	chr19:49119055-49119272(-)$1	217	0	3	9.0000
KKA	chr5:176524281-176524494(+)$1	213	18	21	9.0000
]cc	chr19:12924129-12924382(+)$1	253	115	118	9.0000
:ff	chr4:120219604-120219824(-)$1	220	137	140	9.0000
ffq	chr6:33243641-33243845(+)$1	204	8	11	9.0000
III	chr6:44201611-44201923(+)$1	312	7	10	9.0000
!!f	chr6:160199656-160199978(+)$1	322	83	86	9.0000
{DD	chr7:143087758-143088032(+)$1	274	13	16	9.0000
CCb	chr11:116706652-116706870(-)$1	218	14	17	9.0000
ccc	chr11:17096935-17097150(-)$1	215	73	76	9.0000
ccc	chr6:144416218-144416469(-)$1	251	92	95	9.0000
FFF	chr14:105954979-105955209(+)$1	230	2	5	9.0000
CCM	chr3:50325187-50325443(-)$1	256	2	5	9.0000
#cc	chr2:129023719-129023992(-)$1	273	118	121	9.0000
ccc	chr16:30087537-30087776(+)$1	239	66	69	9.0000
cc]	chr20:4680621-4680892(+)$1	271	18	21	9.0000
FFF	chr14:95090143-95090352(+)$1	209	57	60	9.0000
ccc	chr22:24963972-24964240(+)$1	268	24	27	9.0000
[hh	chr6:34212609-34212839(+)$1	230	66	69	9.0000
mdd	chr5:135398992-135399286(+)$1	294	126	129	9.0000
eee	chr2:113346376-113346656(+)$1	280	18	21	9.0000
sss	chr19:8376199-8376532(-)$1	333	11	14	9.0000
mmc	chr9:140446746-140447001(+)$1	255	79	82	9.0000
ccc	chr8:27455516-27455763(-)$1	247	40	43	9.0000
hhh	chr19:2272952-2273244(+)$1	292	168	171	9.0000
EEE	chr2:219679702-219679922(+)$1	220	0	3	9.0000
dd]	chr12:104341553-104341782(+)$1	229	92	95	9.0000
ff:	chr17:40125944-40126171(+)$1	227	54	57	9.0000
[ee	chr13:113977553-113977768(+)$1	215	36	39	9.0000
ccd	chr22:50941641-50941932(-)$1	291	39	42	9.0000
CC{	chr17:76168155-76168419(+)$1	264	4	7	9.0000
f:F	chr10:102745990-102746232(-)$1	242	57	60	9.0000
eee	chr1:43392255-43392473(-)$1	218	7	10	9.0000
llc	chr16:29869619-29869860(-)$1	241	20	23	9.0000
::b	chr16:56642421-56642695(+)$1	274	53	56	9.0000
::d	chr16:1375068-1375324(+)$1	256	52	55	9.0000
ggg	chr7:26232031-26232278(-)$1	247	12	15	9.0000
CCK	chr11:66044693-66044939(+)$1	246	1	4	9.0000
{CC	chr20:60711731-60711982(-)$1	251	11	14	9.0000
CC:	chr1:54683791-54684046(+)$1	255	4	7	9.0000
[ee	chr19:47112295-47112540(+)$1	245	46	49	9.0000
dd2	chr1:150594820-150595065(-)$1	245	82	85	9.0000
!ff	chr2:201950095-201950367(+)$1	272	136	139	9.0000
:::	chr14:24608015-24608259(+)$1	244	27	30	9.0000
ee[	chr22:19949972-19950335(+)$1	363	28	31	9.0000
ddd	chr2:25013055-25013321(-)$1	266	42	45	9.0000
ggg	chr5:167945995-167946260(+)$1	265	122	125	9.0000
ggg	chr19:15226711-15226971(-)$1	260	6	9	9.0000
ooo	chr3:129023645-129023897(+)$1	252	53	56	9.0000
:cc	chr20:48740674-48740937(-)$1	263	2	5	9.0000
nnn	chr6:30711302-30711538(-)$1	236	29	32	9.0000
++c	chr1:8037654-8037894(+)$1	240	25	28	9.0000
ee!	chrX:48689439-48689669(-)$1	230	3	6	9.0000
ddd	chr20:34287582-34287785(+)$1	203	13	16	9.0000
ggg	chr20:61303387-61303656(+)$1	269	4	7	9.0000
ssc	chr8:145637724-145638040(-)$1	316	38	41	9.0000
HHE	chr19:6368598-6368886(+)$1	288	21	24	9.0000
eee	chr1:87328459-87328707(-)$1	248	69	72	9.0000
gg7	chr16:18800323-18800535(-)$1	212	42	45	9.0000
ttt	chr9:19376199-19376441(-)$1	242	30	33	9.0000
ddd	chr11:116703499-116703721(+)$1	222	8	11	9.0000
eee	chr2:130947941-130948149(+)$1	208	47	50	9.0000
CCC	chr11:62557505-62557789(+)$1	284	10	13	9.0000
bb!	chr6:31237642-31237848(-)$1	206	28	31	9.0000
:cc	chr17:7004618-7004861(-)$1	243	3	6	9.0000
C{B	chr1:9910327-9910598(-)$1	271	45	48	9.0000
bb[	chr14:105954939-105955165(+)$1	226	24	27	9.0000
fff	chr16:5075041-5075282(-)$1	241	10	13	9.0000
:EE	chr8:30423670-30423910(+)$1	240	12	15	9.0000
oob	chr11:47591150-47591528(+)$1	378	20	23	9.0000
BBK	chr1:55530315-55530597(+)$1	282	12	15	9.0000
[gg	chr11:63743758-63744010(+)$1	252	7	10	9.0000
{DD	chr4:74285252-74285456(+)$1	204	20	23	9.0000
ddd	chr9:116822446-116822650(-)$1	204	19	22	9.0000
KKB	chr17:7215064-7215316(+)$1	252	5	8	9.0000
ccc	chr19:36149396-36149621(+)$1	225	68	71	9.0000
:::	chr16:28995451-28995784(+)$1	333	0	3	9.0000
d[f	chr19:4037248-4037469(+)$1	221	6	9	9.0000
!!b	chr3:52023012-52023275(+)$1	263	31	34	9.0000
::B	chr8:146015136-146015359(-)$1	223	2	5	9.0000
ssf	chr4:74286777-74287012(+)$1	235	80	83	9.0000
llc	chr20:3019047-3019344(+)$1	297	131	134	9.0000
HHb	chr14:23080568-23080861(+)$1	293	14	17	9.0000
hhh	chr16:69744639-69744887(-)$1	248	20	23	9.0000
FFF	chr19:18642773-18643075(-)$1	302	28	31	9.0000
ccc	chr8:99057497-99057719(-)$1	222	67	70	9.0000
CC{	chr15:44085807-44086020(+)$1	213	40	43	9.0000
iii	chr20:48741023-48741263(-)$1	240	39	42	9.0000
===	chr16:1749167-1749429(+)$1	262	11	14	9.0000
eee	chr19:58899477-58899704(+)$1	227	6	9	9.0000
bb[	chr12:56537798-56538075(+)$1	277	32	35	9.0000
:ee	chr11:116706480-116706695(-)$1	215	4	7	9.0000
c[c	chr11:118916028-118916285(-)$1	257	70	73	9.0000
dd:	chr20:35025035-35025317(+)$1	282	119	122	9.0000
ccc	chr11:75283195-75283461(+)$1	266	79	82	9.0000

#DB
.((	chr14:95035964-95036287(+)$1	1	20	23	9.0000
..(	chr14:105954488-105954696(+)$1	1	0	3	9.0000
)))	chr15:44063463-44063703(+)$1	1	78	81	9.0000
..(	chr14:105225800-105226045(+)$1	1	0	3	9.0000
...	chr14:65405952-65406240(-)$1	1	0	3	9.0000
..(	chr19:49119055-49119272(-)$1	1	0	3	9.0000
..(	chr5:176524281-176524494(+)$1	1	18	21	9.0000
.))	chr19:12924129-12924382(+)$1	1	115	118	9.0000
.((	chr4:120219604-120219824(-)$1	1	137	140	9.0000
((.	chr6:33243641-33243845(+)$1	1	8	11	9.0000
(((	chr6:44201611-44201923(+)$1	1	7	10	9.0000
..(	chr6:160199656-160199978(+)$1	1	83	86	9.0000
.((	chr7:143087758-143088032(+)$1	1	13	16	9.0000
(((	chr11:116706652-116706870(-)$1	1	14	17	9.0000
(((	chr11:17096935-17097150(-)$1	1	73	76	9.0000
(((	chr6:144416218-144416469(-)$1	1	92	95	9.0000
(((	chr14:105954979-105955209(+)$1	1	2	5	9.0000
((.	chr3:50325187-50325443(-)$1	1	2	5	9.0000
.((	chr2:129023719-129023992(-)$1	1	118	121	9.0000
)))	chr16:30087537-30087776(+)$1	1	66	69	9.0000
)).	chr20:4680621-4680892(+)$1	1	18	21	9.0000
(((	chr14:95090143-95090352(+)$1	1	57	60	9.0000
)))	chr22:24963972-24964240(+)$1	1	24	27	9.0000
.((	chr6:34212609-34212839(+)$1	1	66	69	9.0000
.))	chr5:135398992-135399286(+)$1	1	126	129	9.0000
(((	chr2:113346376-113346656(+)$1	1	18	21	9.0000
...	chr19:8376199-8376532(-)$1	1	11	14	9.0000
..)	chr9:140446746-140447001(+)$1	1	79	82	9.0000
(((	chr8:27455516-27455763(-)$1	1	40	43	9.0000
(((	chr19:2272952-2273244(+)$1	1	168	171	9.0000
(((	chr2:219679702-219679922(+)$1	1	0	3	9.0000
)).	chr12:104341553-104341782(+)$1	1	92	95	9.0000
)).	chr17:40125944-40126171(+)$1	1	54	57	9.0000
.((	chr13:113977553-113977768(+)$1	1	36	39	9.0000
)))	chr22:50941641-50941932(-)$1	1	39	42	9.0000
((.	chr17:76168155-76168419(+)$1	1	4	7	9.0000
).)	chr10:102745990-102746232(-)$1	1	57	60	9.0000
(((	chr1:43392255-43392473(-)$1	1	7	10	9.0000
..)	chr16:29869619-29869860(-)$1	1	20	23	9.0000
..(	chr16:56642421-56642695(+)$1	1	53	56	9.0000
..(	chr16:1375068-1375324(+)$1	1	52	55	9.0000
(((	chr7:26232031-26232278(-)$1	1	12	15	9.0000
((.	chr11:66044693-66044939(+)$1	1	1	4	9.0000
.((	chr20:60711731-60711982(-)$1	1	11	14	9.0000
((.	chr1:54683791-54684046(+)$1	1	4	7	9.0000
.((	chr19:47112295-47112540(+)$1	1	46	49	9.0000
)).	chr1:150594820-150595065(-)$1	1	82	85	9.0000
.((	chr2:201950095-201950367(+)$1	1	136	139	9.0000
...	chr14:24608015-24608259(+)$1	1	27	30	9.0000
((.	chr22:19949972-19950335(+)$1	1	28	31	9.0000
)))	chr2:25013055-25013321(-)$1	1	42	45	9.0000
(((	chr5:167945995-167946260(+)$1	1	122	125	9.0000
(((	chr19:15226711-15226971(-)$1	1	6	9	9.0000
...	chr3:129023645-129023897(+)$1	1	53	56	9.0000
.((	chr20:48740674-48740937(-)$1	1	2	5	9.0000
...	chr6:30711302-30711538(-)$1	1	29	32	9.0000
..(	chr1:8037654-8037894(+)$1	1	25	28	9.0000
((.	chrX:48689439-48689669(-)$1	1	3	6	9.0000
)))	chr20:34287582-34287785(+)$1	1	13	16	9.0000
(((	chr20:61303387-61303656(+)$1	1	4	7	9.0000
..)	chr8:145637724-145638040(-)$1	1	38	41	9.0000
(((	chr19:6368598-6368886(+)$1	1	21	24	9.0000
(((	chr1:87328459-87328707(-)$1	1	69	72	9.0000
)).	chr16:18800323-18800535(-)$1	1	42	45	9.0000
...	chr9:19376199-19376441(-)$1	1	30	33	9.0000
)))	chr11:116703499-116703721(+)$1	1	8	11	9.0000
)))	chr2:130947941-130948149(+)$1	1	47	50	9.0000
(((	chr11:62557505-62557789(+)$1	1	10	13	9.0000
((.	chr6:31237642-31237848(-)$1	1	28	31	9.0000
.((	chr17:7004618-7004861(-)$1	1	3	6	9.0000
(.(	chr1:9910327-9910598(-)$1	1	45	48	9.0000
((.	chr14:105954939-105955165(+)$1	1	24	27	9.0000
(((	chr16:5075041-5075282(-)$1	1	10	13	9.0000
.((	chr8:30423670-30423910(+)$1	1	12	15	9.0000
..)	chr11:47591150-47591528(+)$1	1	20	23	9.0000
((.	chr1:55530315-55530597(+)$1	1	12	15	9.0000
.((	chr11:63743758-63744010(+)$1	1	7	10	9.0000
.((	chr4:74285252-74285456(+)$1	1	20	23	9.0000
(((	chr9:116822446-116822650(-)$1	1	19	22	9.0000
..(	chr17:7215064-7215316(+)$1	1	5	8	9.0000
(((	chr19:36149396-36149621(+)$1	1	68	71	9.0000
...	chr16:28995451-28995784(+)$1	1	0	3	9.0000
(.(	chr19:4037248-4037469(+)$1	1	6	9	9.0000
..(	chr3:52023012-52023275(+)$1	1	31	34	9.0000
..(	chr8:146015136-146015359(-)$1	1	2	5	9.0000
..)	chr4:74286777-74287012(+)$1	1	80	83	9.0000
..)	chr20:3019047-3019344(+)$1	1	131	134	9.0000
(((	chr14:23080568-23080861(+)$1	1	14	17	9.0000
(((	chr16:69744639-69744887(-)$1	1	20	23	9.0000
(((	chr19:18642773-18643075(-)$1	1	28	31	9.0000
(((	chr8:99057497-99057719(-)$1	1	67	70	9.0000
((.	chr15:44085807-44086020(+)$1	1	40	43	9.0000
)))	chr20:48741023-48741263(-)$1	1	39	42	9.0000
(((	chr16:1749167-1749429(+)$1	1	11	14	9.0000
(((	chr19:58899477-58899704(+)$1	1	6	9	9.0000
((.	chr12:56537798-56538075(+)$1	1	32	35	9.0000
.((	chr11:116706480-116706695(-)$1	1	4	7	9.0000
(.(	chr11:118916028-118916285(-)$1	1	70	73	9.0000
)).	chr20:35025035-35025317(+)$1	1	119	122	9.0000
)))	chr11:75283195-75283461(+)$1	1	79	82	9.0000

#PSSM
C : 0.99	c : 0.01	
U : 0.99	u : 0.01	
G : 0.99	g : 0.01	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_CDS_m1_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
GGOOOOOOGGGGGGG::::::::dddd[bbmmmmbb]ddddgggggggnnnnngggggggcccpppppppccc:::ffffff[eeeeebbnnnnnbb]eeeee22ffffff:::::ccc"""ddddqqqqqqqqdddd4444ccc::::eeeee[cccccclllccc22ccceeeee:GGGGGGGGGGGGGGYYHHHHHHHHYYBB}DDDD:::dddd[ffffffbbbbnnnnnbb]bb22ffffff]dddd:::ddddmmmmddddHHHHHHHHC	chr16:85838465-85838808(+)$1	343	49	325	828.0000

#DB
((......(((((((........((((.((....)).))))(((((((.....)))))))(((.......)))...((((((.(((((((.....)).)))))..)))))).....(((...((((........))))....)))....(((((.((((((...)))..)))))))).))))))))))))))..))))))))..)).))))...((((.((((((((((.....)).))..)))))).))))...((((....)))))))))))))	chr16:85838465-85838808(+)$1	1	49	325	828.0000

#PSSM
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	

#score	828.0
#seq	1
#width	276
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_transcript_m2_run2.nuc.txt

#NT
ugugcguguguguuugugugugugugu	chr16:11888715-11888991(-)$1	276	97	124	55.8333
uguguuugggggggagugugugugugu	chr22:48205493-48205791(+)$1	298	163	190	43.5000
ugcgugugcgugcguguuagugugugu	chr6:36076252-36076554(+)$1	302	99	126	44.9166
CGUGUGUGUGUGUGUGUGUUUGAAUGA	chr7:102739841-102740089(+)$1	248	180	207	43.6666
ugugagcgugugugugcucgugugugu	chr16:87778432-87778702(-)$1	270	203	230	46.0000
ugugugugugugugugugugAAGUUGU	chr12:105031982-105032267(+)$1	285	108	135	47.5833
ugugugcgagugugugugcgugcgugu	chr15:37391229-37391505(-)$1	276	26	53	48.9166
uguguguguauguguguguaugugugu	chr1:6896541-6896833(+)$1	292	92	119	55.0833
GGGguguguguguguaugugugcaugu	chr4:154408956-154409217(+)$1	261	232	259	43.6666
CGUGUGUGCACGCGUGUGUGUGUGUGU	chr14:104150942-104151189(+)$1	247	105	132	45.0000
ugugugugcgugugugugugcaugugu	chr19:2336410-2336700(+)$1	290	224	251	52.5833
ugugugugugugugugcaugugugugu	chr5:151167350-151167646(+)$1	296	108	135	57.1666
uguguguguguauauguaugugugugu	chr2:236986607-236986884(+)$1	277	201	228	52.5833
UCuguguguguguguguguguaugugu	chr6:4921076-4921325(+)$1	249	151	178	55.5000
uguguauguguggguguguuugugugu	chr5:90073907-90074194(+)$1	287	23	50	51.4166
UGUGUGUGAGUGUGAGAGUGUGUGUUU	chr15:37389931-37390221(-)$1	290	82	109	48.2500
CgugugugugugugugugugugugAUU	chr2:111406578-111406851(-)$1	273	103	130	51.5833
ugugugagucugugugagggugugugg	chr19:28918474-28918682(-)$1	208	87	114	43.1666
UGUGUCCGCGAGUGUGCGUGUGUGUGU	chr17:80408103-80408426(-)$1	323	114	141	44.5833
gguguguguguauguaugucuguguga	chr16:81648546-81648803(+)$1	257	178	205	43.3333
ugugugugGGUGCAUGCCUGUGUGUGU	chr10:80980606-80980907(+)$1	301	220	247	46.0000
AGAguguguguguguaugugugugugu	chr13:79904877-79905185(-)$1	308	98	125	52.3333
uguguguaugugucuguguguauaugu	chr11:3840883-3841240(+)$1	357	173	200	47.9166
ugugugugugugugugucugugugugu	chr7:20180365-20180651(-)$1	286	127	154	60.3333
ugugugugugugugugugugugugugu	chr15:82122517-82122806(-)$1	289	95	122	63.9166
Ggugugugugagugugugugugugugu	chr20:62296354-62296628(+)$1	274	97	124	56.0000
ugugugcgugcgugcgugugugugugu	chr12:122250535-122250830(+)$1	295	123	150	52.3333
ugugagaguguguauguguuugagugu	chr3:13415676-13416012(-)$1	336	108	135	44.0000
ugugagcgugugugugcucgugugugu	chr16:87778337-87778627(-)$1	290	128	155	46.0000
ugugugugugugugugugugugugugu	chr11:125526991-125527337(+)$1	346	91	118	63.9166
ugugugugugugugugugugugugugu	chr20:3172480-3172754(-)$1	274	109	136	63.9166
ugugugugugugugugugugugugugu	chr6:136599972-136600259(-)$1	287	96	123	63.9166
ugugugugugugugagugugggugcgu	chr11:47377110-47377351(-)$1	241	78	105	51.5000
ugugugcuuguguguaagugugugcgu	chr10:80925113-80925450(+)$1	337	95	122	44.2500
ugugugugugcacgcaugugugugugu	chr5:90099718-90100018(+)$1	300	91	118	44.1666
ugugugcgugugugugugcgcgugugu	chr2:86415363-86415635(-)$1	272	93	120	52.8333
cgugugugagugcgugugugugugugu	chr8:142281790-142282070(-)$1	280	96	123	53.6666
AGAGUGUGAGUGUGUGUGUGUGUUUUU	chr16:29831217-29831507(+)$1	290	1	28	43.8333
ugucugugugugcauguaugugugugu	chr1:1276530-1276811(-)$1	281	113	140	49.0000
AGUUCgugugugugugugugugugugA	chr1:228365611-228365883(+)$1	272	91	118	47.4166
ugugggugugugugauagugcgugugu	chr2:121035180-121035438(+)$1	258	93	120	43.9166
uguguguaugugugugcaugaaugugu	chr22:48210274-48210569(+)$1	295	240	267	45.4166
uguguguaugugacugugugugucugu	chr12:124915560-124915887(-)$1	327	16	43	47.7500
ugaguguguguggauguguggaugugu	chr8:2567341-2567611(-)$1	270	1	28	44.4166
uuucuuuguguguaugugcgugugugu	chr1:65740487-65740759(+)$1	272	88	115	43.0000
uguguguguguguguuugugagugugu	chr14:60760292-60760580(+)$1	288	98	125	55.8333
uguguguguguguguguccguguccgu	chrX:48775522-48775856(-)$1	334	158	185	48.0000
ugugugugugugugcauaugugugugu	chr2:10508423-10508673(+)$1	250	50	77	52.8333
ugugcgucugugugugugcgucugugu	chr9:138899044-138899329(-)$1	285	0	27	47.6666
ugugugugugugugugcuugagugugu	chr5:60633695-60633955(+)$1	260	98	125	53.1666
cguguguguuuaagcgugugugugugu	chr17:78796599-78796870(+)$1	271	124	151	44.1666
cgggugugugugugugugugugugugu	chr10:32216989-32217338(-)$1	349	208	235	56.3333
ugugugugugugugugugugugugugu	chr4:151259978-151260241(-)$1	263	94	121	63.9166
ugugugugugugugugugugugugugu	chr1:154206030-154206297(+)$1	267	97	124	63.9166
ugugugcaugugugggggugugagugu	chr4:129780369-129780788(+)$1	419	34	61	44.0833
Agugugugugugugugugugugugugu	chr15:34774867-34775139(-)$1	272	100	127	60.4166
uuuguguguguguguguauguaugugu	chr4:160216421-160216744(+)$1	323	129	156	52.2500
uguuugugugugcuuguguuugugugu	chr13:114897020-114897427(-)$1	407	71	98	47.8333
cguguguccuugugugugugugugugu	chr19:576833-577131(+)$1	298	119	146	48.4166

#otherMatches

#Struct PSSM
{A{EEEEE:::::::ggggggg[cccn	chr12:58216977-58217274(-)$1	297	116	143	49.0833
hhhh:EEEEE{HHHHHHHH:dddd[ao	chr16:11888715-11888991(-)$1	276	97	124	55.8333
E}CCCYYA}EEEEE:::::::::::::	chr22:48205493-48205791(+)$1	298	163	190	43.5000
ggggmmmmgggggggdddd[ddddccc	chr6:36076252-36076554(+)$1	302	99	126	44.9166
fffff]dddd4444ggggggg::::::	chr7:102739841-102740089(+)$1	248	180	207	43.6666
========oooooo=============	chr16:87778432-87778702(-)$1	270	203	230	46.0000
eee]a]ccc]ccc]ccc>>>>>>>>>>	chr12:105031982-105032267(+)$1	285	108	135	47.5833
========oooooo===========ff	chr15:37391229-37391505(-)$1	276	26	53	48.9166
=========================mm	chr1:6896541-6896833(+)$1	292	92	119	55.0833
FFFFF}A}A}A|||||||CCC}A::::	chr4:154408956-154409217(+)$1	261	232	259	43.6666
ffffffgggggggooooooggggggg]	chr14:104150942-104151189(+)$1	247	105	132	45.0000
&&&&&&&ffffff[ccc[ddddmmmmd	chr19:2336410-2336700(+)$1	290	224	251	52.5833
{EEEEE{CCC{AKKEEEEE{A:CCC{B	chr5:151167350-151167646(+)$1	296	108	135	57.1666
ccc$$$$$ggggggg####eeeeennn	chr2:236986607-236986884(+)$1	277	201	228	52.5833
fqqqqqqqqffffff22dddd22ffff	chr6:4921076-4921325(+)$1	249	151	178	55.5000
=========ccc[cccggggggg[a[a	chr5:90073907-90074194(+)$1	287	23	50	51.4166
nnnnnffffff:::CCC}EEEEE}FFF	chr15:37389931-37390221(-)$1	290	82	109	48.2500
dd[ccc"""bb!!dddd!!iiiiiiii	chr2:111406578-111406851(-)$1	273	103	130	51.5833
gggg[eeeeexxxxxxxxxxxxxxxee	chr19:28918474-28918682(-)$1	208	87	114	43.1666
333cccbbggggggg]ccc55555ccc	chr17:80408103-80408426(-)$1	323	114	141	44.5833
:::::::=============nnnnn==	chr16:81648546-81648803(+)$1	257	178	205	43.3333
ggggggggggggggdddd[a[ccclll	chr10:80980606-80980907(+)$1	301	220	247	46.0000
cnnnnnccc]==========4444bbd	chr13:79904877-79905185(-)$1	308	98	125	52.3333
pppa]hhhhhhhhddddhhhhhhhh!!	chr11:3840883-3841240(+)$1	357	173	200	47.9166
zzzzzzzzzzzzzzzzzdddd333a]b	chr7:20180365-20180651(-)$1	286	127	154	60.3333
a[a[a[a[==============mmmm=	chr15:82122517-82122806(-)$1	289	95	122	63.9166
d!!a[a[bb[bb[==============	chr20:62296354-62296628(+)$1	274	97	124	56.0000
FFFFDDDD:gggggggssssssssssg	chr12:122250535-122250830(+)$1	295	123	150	52.3333
gggg:::::::::::::::::::::::	chr3:13415676-13416012(-)$1	336	108	135	44.0000
66666eeeee]ffffff]bb22iiiii	chr16:87778337-87778627(-)$1	290	128	155	46.0000
oooooeeeee]bb::::::BB{DDDD{	chr11:125526991-125527337(+)$1	346	91	118	63.9166
[bb[eeeee####bb[bb[bb[ccc##	chr20:3172480-3172754(-)$1	274	109	136	63.9166
uuuuuuuuuuuuiiiiiiiii]=====	chr6:136599972-136600259(-)$1	287	96	123	63.9166
d[ayyyyyyyyyyyyyyyya]dddd]=	chr11:47377110-47377351(-)$1	241	78	105	51.5000
iiiiiiiwwwwwwwwwwwwwwiiiiii	chr10:80925113-80925450(+)$1	337	95	122	44.2500
ffff]ffffffffffffmmmmffffff	chr5:90099718-90100018(+)$1	300	91	118	44.1666
mmm==============bb[=======	chr2:86415363-86415635(-)$1	272	93	120	52.8333
g]ffffff]==================	chr8:142281790-142282070(-)$1	280	96	123	53.6666
:::A{GGGGGGGKKA{CCC{A{GGGGG	chr16:29831217-29831507(+)$1	290	1	28	43.8333
=========!!ffffff[eeeee[ggg	chr1:1276530-1276811(-)$1	281	113	140	49.0000
eee0000000000bbggggggg]bb::	chr1:228365611-228365883(+)$1	272	91	118	47.4166
+++dddd####ccc[iiiiiiiiiccc	chr2:121035180-121035438(+)$1	258	93	120	43.9166
qqqqqq=============00000000	chr22:48210274-48210569(+)$1	295	240	267	45.4166
hhhh[bb####cccpppppppccc444	chr12:124915560-124915887(-)$1	327	16	43	47.7500
:::::::EEEEE{GGGGGGG{BBNNNN	chr8:2567341-2567611(-)$1	270	1	28	44.4166
^^^^^^^ggggggg:CCC}FFFFFFgg	chr1:65740487-65740759(+)$1	272	88	115	43.0000
ggg22a22ccc333dddd22dddd]ff	chr14:60760292-60760580(+)$1	288	98	125	55.8333
B}DDDD}A}CCC}FFFFFF:hhhhhhh	chrX:48775522-48775856(-)$1	334	158	185	48.0000
II:ccc[eeeee[===========bbb	chr2:10508423-10508673(+)$1	250	50	77	52.8333
:::::EEEEE{DDDD{DDDDHHHHHHH	chr9:138899044-138899329(-)$1	285	0	27	47.6666
MDDDDEEEEE{A{EEEEE{A{CCC:ee	chr5:60633695-60633955(+)$1	260	98	125	53.1666
==]ffffff4444bb]dddd]iiiiii	chr17:78796599-78796870(+)$1	271	124	151	44.1666
dEEEEE{CCC::::::eeeeeoooooo	chr10:32216989-32217338(-)$1	349	208	235	56.3333
oooooccc]ccc:FFFFFF{CCC{BBi	chr4:151259978-151260241(-)$1	263	94	121	63.9166
dd]ccc]bb22a]eeeee]ccc:::::	chr1:154206030-154206297(+)$1	267	97	124	63.9166
=====iiiiiiiii"""eeeee[ccc!	chr4:129780369-129780788(+)$1	419	34	61	44.0833
eeeee]ccc55555eeeee55555bb2	chr15:34774867-34775139(-)$1	272	100	127	60.4166
===]hhhhhhhh:JJJJJJJJJJJKKB	chr4:160216421-160216744(+)$1	323	129	156	52.2500
mmmmiiiiiiiii:::::::::::fff	chr13:114897020-114897427(-)$1	407	71	98	47.8333
cc0000000000===============	chr19:576833-577131(+)$1	298	119	146	48.4166

#DB
.(.(((((.......(((((((.(((.	chr12:58216977-58217274(-)$1	1	116	143	49.0833
)))).(((((.((((((((.((((.(.	chr16:11888715-11888991(-)$1	1	97	124	55.8333
).)))..).))))).............	chr22:48205493-48205791(+)$1	1	163	190	43.5000
((((....)))))))((((.(((((((	chr6:36076252-36076554(+)$1	1	99	126	44.9166
))))).))))....)))))))......	chr7:102739841-102740089(+)$1	1	180	207	43.6666
((((((((......)))))))))))))	chr16:87778432-87778702(-)$1	1	203	230	46.0000
))).).))).))).)))..........	chr12:105031982-105032267(+)$1	1	108	135	47.5833
((((((((......)))))))))))((	chr15:37391229-37391505(-)$1	1	26	53	48.9166
(((((((((((((((((((((((((..	chr1:6896541-6896833(+)$1	1	92	119	55.0833
))))).).).).......))).)....	chr4:154408956-154409217(+)$1	1	232	259	43.6666
(((((((((((((......))))))).	chr14:104150942-104151189(+)$1	1	105	132	45.0000
.......((((((.(((.((((....)	chr19:2336410-2336700(+)$1	1	224	251	52.5833
.(((((.(((.(..(((((.(.(((.(	chr5:151167350-151167646(+)$1	1	108	135	57.1666
(((.....(((((((....(((((...	chr2:236986607-236986884(+)$1	1	201	228	52.5833
(........))))))..))))..))))	chr6:4921076-4921325(+)$1	1	151	178	55.5000
((((((((((((.((((((((((.(.(	chr5:90073907-90074194(+)$1	1	23	50	51.4166
.....))))))...))).))))).)))	chr15:37389931-37390221(-)$1	1	82	109	48.2500
((.(((...((..((((..((((((((	chr2:111406578-111406851(-)$1	1	103	130	51.5833
((((.(((((...............))	chr19:28918474-28918682(-)$1	1	87	114	43.1666
...)))))))))))).))).....)))	chr17:80408103-80408426(-)$1	1	114	141	44.5833
.......(((((((((((((.....))	chr16:81648546-81648803(+)$1	1	178	205	43.3333
)))))))(((((((((((.(.(((...	chr10:80980606-80980907(+)$1	1	220	247	46.0000
(.....))).))))))))))....)))	chr13:79904877-79905185(-)$1	1	98	125	52.3333
...).))))))))((((((((((((..	chr11:3840883-3841240(+)$1	1	173	200	47.9166
.................))))...).)	chr7:20180365-20180651(-)$1	1	127	154	60.3333
(.(.(.(.((((((((((((((....)	chr15:82122517-82122806(-)$1	1	95	122	63.9166
(..(.(.((.((.((((((((((((((	chr20:62296354-62296628(+)$1	1	97	124	56.0000
)))))))).(((((((..........)	chr12:122250535-122250830(+)$1	1	123	150	52.3333
)))).......................	chr3:13415676-13416012(-)$1	1	108	135	44.0000
.....))))).)))))).))..)))))	chr16:87778337-87778627(-)$1	1	128	155	46.0000
.....))))).))......((.((((.	chr11:125526991-125527337(+)$1	1	91	118	63.9166
.((.(((((....((.((.((.(((..	chr20:3172480-3172754(-)$1	1	109	136	63.9166
............))))))))).)))))	chr6:136599972-136600259(-)$1	1	96	123	63.9166
(.(................).)))).)	chr11:47377110-47377351(-)$1	1	78	105	51.5000
(((((((..............))))))	chr10:80925113-80925450(+)$1	1	95	122	44.2500
)))).))))))((((((....))))))	chr5:90099718-90100018(+)$1	1	91	118	44.1666
...))))))))))))))((.(((((((	chr2:86415363-86415635(-)$1	1	93	120	52.8333
).)))))).))))))))))((((((((	chr8:142281790-142282070(-)$1	1	96	123	53.6666
...(.(((((((..(.(((.(.(((((	chr16:29831217-29831507(+)$1	1	1	28	43.8333
(((((((((..((((((.(((((.(((	chr1:1276530-1276811(-)$1	1	113	140	49.0000
)))..........))))))))).))..	chr1:228365611-228365883(+)$1	1	91	118	47.4166
...((((....(((.((((((((((((	chr2:121035180-121035438(+)$1	1	93	120	43.9166
......)))))))))))))........	chr22:48210274-48210569(+)$1	1	240	267	45.4166
((((.((....(((.......)))...	chr12:124915560-124915887(-)$1	1	16	43	47.7500
.......(((((.(((((((.((....	chr8:2567341-2567611(-)$1	1	1	28	44.4166
.......))))))).))).))))))((	chr1:65740487-65740759(+)$1	1	88	115	43.0000
)))..)..)))...))))..)))).))	chr14:60760292-60760580(+)$1	1	98	125	55.8333
).)))).).))).)))))).(((((((	chrX:48775522-48775856(-)$1	1	158	185	48.0000
((.(((.(((((.((((((((((((((	chr2:10508423-10508673(+)$1	1	50	77	52.8333
.....(((((.((((.(((((((((((	chr9:138899044-138899329(-)$1	1	0	27	47.6666
.(((((((((.(.(((((.(.(((.((	chr5:60633695-60633955(+)$1	1	98	125	53.1666
)).))))))....)).)))).))))))	chr17:78796599-78796870(+)$1	1	124	151	44.1666
)(((((.(((......(((((......	chr10:32216989-32217338(-)$1	1	208	235	56.3333
.....))).))).((((((.(((.(((	chr4:151259978-151260241(-)$1	1	94	121	63.9166
)).))).))..).))))).))).....	chr1:154206030-154206297(+)$1	1	97	124	63.9166
((((((((((((((...(((((.(((.	chr4:129780369-129780788(+)$1	1	34	61	44.0833
))))).))).....))))).....)).	chr15:34774867-34775139(-)$1	1	100	127	60.4166
))).)))))))).(((((((((((..(	chr4:160216421-160216744(+)$1	1	129	156	52.2500
....)))))))))...........(((	chr13:114897020-114897427(-)$1	1	71	98	47.8333
))..........)))))))))))))))	chr19:576833-577131(+)$1	1	119	146	48.4166

#PSSM
u : 0.70	U : 0.06	A : 0.06	c : 0.06	C : 0.05	G : 0.03	g : 0.01	
g : 0.80	G : 0.15	u : 0.03	C : 0.01	
u : 0.80	U : 0.09	A : 0.03	c : 0.01	G : 0.01	a : 0.01	g : 0.01	
g : 0.83	G : 0.09	c : 0.03	U : 0.01	u : 0.01	
u : 0.78	U : 0.08	a : 0.05	c : 0.03	A : 0.01	C : 0.01	g : 0.01	
g : 0.85	G : 0.08	u : 0.03	a : 0.01	C : 0.01	
u : 0.75	c : 0.11	U : 0.06	a : 0.03	A : 0.01	C : 0.01	
g : 0.78	G : 0.09	a : 0.06	c : 0.03	u : 0.01	
u : 0.78	A : 0.05	c : 0.05	a : 0.03	C : 0.03	g : 0.01	U : 0.01	G : 0.01	
g : 0.81	G : 0.09	u : 0.03	a : 0.01	A : 0.01	c : 0.01	
u : 0.81	U : 0.08	c : 0.03	g : 0.01	C : 0.01	A : 0.01	a : 0.01	
g : 0.81	G : 0.11	a : 0.06	
u : 0.71	U : 0.08	c : 0.08	g : 0.05	C : 0.03	a : 0.03	
g : 0.73	G : 0.09	a : 0.08	u : 0.03	c : 0.03	A : 0.01	
u : 0.75	U : 0.09	c : 0.06	a : 0.05	A : 0.01	g : 0.01	
g : 0.75	G : 0.11	a : 0.09	u : 0.03	
u : 0.73	c : 0.08	U : 0.06	a : 0.05	C : 0.03	A : 0.01	g : 0.01	
g : 0.68	a : 0.09	G : 0.08	u : 0.06	c : 0.03	U : 0.01	C : 0.01	
u : 0.73	U : 0.11	c : 0.11	a : 0.01	g : 0.01	
g : 0.80	G : 0.09	u : 0.05	U : 0.01	a : 0.01	c : 0.01	
u : 0.73	U : 0.11	c : 0.05	a : 0.05	g : 0.03	A : 0.01	
g : 0.75	G : 0.11	a : 0.09	A : 0.01	c : 0.01	
u : 0.80	U : 0.09	c : 0.03	a : 0.03	A : 0.01	G : 0.01	
g : 0.80	G : 0.08	U : 0.03	a : 0.03	c : 0.03	A : 0.01	
u : 0.80	U : 0.13	c : 0.05	A : 0.01	
g : 0.85	G : 0.09	U : 0.05	
u : 0.80	U : 0.13	A : 0.03	g : 0.01	a : 0.01	

#score	3034.000000000001
#seq	60
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_UTR_m1_run1.nuc.txt

#NT
UGG	chr16:75018775-75019059(-)$1	284	4	7	9.0000
UGG	chr19:16187671-16187996(+)$1	325	28	31	9.0000
UGG	chr4:1230048-1230289(-)$1	241	43	46	9.0000
ugg	chr14:105714088-105714371(-)$1	283	11	14	9.0000
UGG	chr16:89349945-89350249(-)$1	304	37	40	9.0000
UGG	chr4:1229089-1229429(-)$1	340	18	21	9.0000
UGG	chr8:144671309-144671573(-)$1	264	4	7	9.0000
UGG	chr19:49841180-49841500(-)$1	320	1	4	9.0000
UGG	chr3:9851513-9851805(+)$1	292	17	20	9.0000
UGG	chr14:105707714-105707977(-)$1	263	10	13	9.0000
UGG	chr19:1470453-1470697(-)$1	244	27	30	9.0000
UGG	chr19:5112764-5113027(+)$1	263	94	97	9.0000
UGG	chr16:69153681-69153924(-)$1	243	78	81	9.0000
UGG	chr17:75423125-75423435(+)$1	310	14	17	9.0000
UGG	chr2:97535591-97535833(-)$1	242	15	18	9.0000
UGG	chr6:3271374-3271636(+)$1	262	64	67	9.0000
UGG	chr19:1474155-1474388(-)$1	233	1	4	9.0000
UGG	chr21:45223582-45223805(+)$1	223	75	78	9.0000
UGG	chr7:1007641-1007890(-)$1	249	43	46	9.0000
UGG	chr2:47747889-47748150(+)$1	261	7	10	9.0000
UGG	chr12:104697385-104697719(+)$1	334	8	11	9.0000
ugg	chr10:3171154-3171412(+)$1	258	48	51	9.0000
UGG	chr3:128211654-128211981(+)$1	327	67	70	9.0000
UGG	chr11:843333-843609(+)$1	276	24	27	9.0000
UGG	chr16:87736793-87737050(-)$1	257	64	67	9.0000
UGG	chr4:760716-760963(-)$1	247	111	114	9.0000
UGG	chr9:134350586-134350828(+)$1	242	17	20	9.0000
UGG	chr19:45166253-45166498(+)$1	245	49	52	9.0000
ugg	chr4:1228553-1228828(-)$1	275	11	14	9.0000
UGG	chr16:87737546-87737801(-)$1	255	8	11	9.0000
UGG	chr1:182360246-182360488(-)$1	242	2	5	9.0000
UGG	chr8:144343074-144343337(+)$1	263	8	11	9.0000
UGG	chr19:41770829-41771098(+)$1	269	14	17	9.0000
ugg	chr22:50013550-50013848(-)$1	298	13	16	9.0000
UGG	chr17:62893384-62893718(-)$1	334	61	64	9.0000
UGG	chr3:33481546-33481796(-)$1	250	0	3	9.0000
UGG	chr16:29678255-29678571(+)$1	316	60	63	9.0000
UGG	chr7:1888969-1889214(-)$1	245	22	25	9.0000
UGG	chr8:94752698-94752925(-)$1	227	9	12	9.0000
ugg	chr1:1284364-1284633(-)$1	269	35	38	9.0000
UGG	chr4:2286945-2287246(-)$1	301	56	59	9.0000
UGG	chr12:124968180-124968418(-)$1	238	30	33	9.0000
UGG	chr9:134350651-134350920(+)$1	269	9	12	9.0000
UGG	chr1:144931762-144932031(-)$1	269	13	16	9.0000
UGG	chr16:89346919-89347168(-)$1	249	10	13	9.0000
UGG	chr4:515963-516237(+)$1	274	3	6	9.0000
UGG	chr19:58991519-58991818(-)$1	299	4	7	9.0000
UGG	chr19:2425971-2426224(-)$1	253	0	3	9.0000
UGG	chr1:144932404-144932642(-)$1	238	129	132	9.0000
UGG	chr4:1229004-1229246(-)$1	242	34	37	9.0000
ugg	chr12:124430793-124431092(-)$1	299	20	23	9.0000
UGG	chr7:1888367-1888612(-)$1	245	11	14	9.0000
UGG	chr8:144343525-144343784(+)$1	259	23	26	9.0000
UGG	chr19:15348962-15349227(-)$1	265	51	54	9.0000
UGG	chr16:87733216-87733460(-)$1	244	30	33	9.0000
UGG	chr19:58772042-58772295(+)$1	253	65	68	9.0000
UGG	chr16:87733260-87733514(-)$1	254	15	18	9.0000
UGG	chr7:1132868-1133113(-)$1	245	1	4	9.0000
UGG	chr19:1472446-1472699(-)$1	253	11	14	9.0000
UGG	chr19:59084322-59084577(-)$1	255	31	34	9.0000
UGG	chr7:1887640-1887902(-)$1	262	6	9	9.0000
UGG	chr1:144932212-144932487(-)$1	275	24	27	9.0000
UGG	chr7:1131018-1131308(-)$1	290	3	6	9.0000
UGG	chr17:27404291-27404546(-)$1	255	0	3	9.0000
UGG	chr21:45181606-45181866(+)$1	260	10	13	9.0000
UGG	chr2:25042924-25043220(+)$1	296	42	45	9.0000
UGG	chr16:85646700-85646990(+)$1	290	54	57	9.0000
UGG	chr4:761163-761374(-)$1	211	48	51	9.0000
UGG	chr1:150946826-150947075(-)$1	249	24	27	9.0000
ugg	chr1:1028060-1028323(-)$1	263	8	11	9.0000
UGG	chr16:87736108-87736346(-)$1	238	34	37	9.0000
UGG	chr3:128209050-128209294(+)$1	244	1	4	9.0000
UGG	chr17:46655748-46655990(-)$1	242	59	62	9.0000
UGG	chr12:104697593-104697895(+)$1	302	9	12	9.0000
UGG	chr1:245026251-245026534(-)$1	283	35	38	9.0000
UGG	chr19:58991071-58991363(-)$1	292	33	36	9.0000
UGG	chr11:61583197-61583442(-)$1	245	16	19	9.0000
UGG	chr4:760842-761086(-)$1	244	234	237	9.0000
ugg	chr16:447710-447954(+)$1	244	22	25	9.0000
ugg	chr4:1229359-1229608(-)$1	249	20	23	9.0000
UGG	chr20:62330389-62330646(-)$1	257	34	37	9.0000
UGG	chr8:94753030-94753280(-)$1	250	17	20	9.0000
UGG	chr9:134350447-134350722(+)$1	275	52	55	9.0000
UGG	chr8:144342430-144342678(+)$1	248	6	9	9.0000
UGG	chr16:87730996-87731258(-)$1	262	52	55	9.0000
UGG	chr16:87734510-87734737(-)$1	227	32	35	9.0000
UGG	chr16:87735790-87736040(-)$1	250	22	25	9.0000
UGG	chr1:228581639-228581905(-)$1	266	0	3	9.0000
UGG	chr17:27404386-27404653(-)$1	267	10	13	9.0000
ugg	chr19:1206001-1206284(+)$1	283	44	47	9.0000
UGG	chr12:132196060-132196346(+)$1	286	27	30	9.0000
UGG	chr1:32827762-32828056(-)$1	294	96	99	9.0000
UGG	chr11:58346512-58346870(+)$1	358	6	9	9.0000
UGG	chr16:89346809-89347062(-)$1	253	29	32	9.0000
UGG	chr9:138379962-138380190(+)$1	228	36	39	9.0000
UGG	chr17:8378145-8378435(+)$1	290	26	29	9.0000
UGG	chr13:108518837-108519094(-)$1	257	89	92	9.0000
UGG	chr9:134351211-134351462(+)$1	251	10	13	9.0000
UGG	chr10:102759598-102759822(+)$1	224	62	65	9.0000

#otherMatches

#Struct PSSM
fff	chr7:6522964-6523227(-)$1	263	33	36	9.0000
bb[	chr16:75018775-75019059(-)$1	284	4	7	9.0000
EE:	chr19:16187671-16187996(+)$1	325	28	31	9.0000
[cc	chr4:1230048-1230289(-)$1	241	43	46	9.0000
eee	chr14:105714088-105714371(-)$1	283	11	14	9.0000
C::	chr16:89349945-89350249(-)$1	304	37	40	9.0000
CMM	chr4:1229089-1229429(-)$1	340	18	21	9.0000
EKK	chr8:144671309-144671573(-)$1	264	4	7	9.0000
:HH	chr19:49841180-49841500(-)$1	320	1	4	9.0000
###	chr3:9851513-9851805(+)$1	292	17	20	9.0000
{DD	chr14:105707714-105707977(-)$1	263	10	13	9.0000
EEE	chr19:1470453-1470697(-)$1	244	27	30	9.0000
nnn	chr19:5112764-5113027(+)$1	263	94	97	9.0000
ccc	chr16:69153681-69153924(-)$1	243	78	81	9.0000
eee	chr17:75423125-75423435(+)$1	310	14	17	9.0000
D{A	chr2:97535591-97535833(-)$1	242	15	18	9.0000
d55	chr6:3271374-3271636(+)$1	262	64	67	9.0000
GGG	chr19:1474155-1474388(-)$1	233	1	4	9.0000
dd:	chr21:45223582-45223805(+)$1	223	75	78	9.0000
]bb	chr7:1007641-1007890(-)$1	249	43	46	9.0000
llc	chr2:47747889-47748150(+)$1	261	7	10	9.0000
BNN	chr12:104697385-104697719(+)$1	334	8	11	9.0000
:ee	chr10:3171154-3171412(+)$1	258	48	51	9.0000
dd!	chr3:128211654-128211981(+)$1	327	67	70	9.0000
b[a	chr11:843333-843609(+)$1	276	24	27	9.0000
!!a	chr16:87736793-87737050(-)$1	257	64	67	9.0000
ffo	chr4:760716-760963(-)$1	247	111	114	9.0000
ddd	chr9:134350586-134350828(+)$1	242	17	20	9.0000
ddc	chr19:45166253-45166498(+)$1	245	49	52	9.0000
[cc	chr4:1228553-1228828(-)$1	275	11	14	9.0000
CKK	chr16:87737546-87737801(-)$1	255	8	11	9.0000
:::	chr1:182360246-182360488(-)$1	242	2	5	9.0000
KJJ	chr8:144343074-144343337(+)$1	263	8	11	9.0000
fff	chr19:41770829-41771098(+)$1	269	14	17	9.0000
!dd	chr22:50013550-50013848(-)$1	298	13	16	9.0000
lle	chr17:62893384-62893718(-)$1	334	61	64	9.0000
:DD	chr3:33481546-33481796(-)$1	250	0	3	9.0000
f77	chr16:29678255-29678571(+)$1	316	60	63	9.0000
""c	chr7:1888969-1889214(-)$1	245	22	25	9.0000
[bb	chr8:94752698-94752925(-)$1	227	9	12	9.0000
hhh	chr1:1284364-1284633(-)$1	269	35	38	9.0000
ma]	chr4:2286945-2287246(-)$1	301	56	59	9.0000
{DD	chr12:124968180-124968418(-)$1	238	30	33	9.0000
b""	chr9:134350651-134350920(+)$1	269	9	12	9.0000
EEE	chr1:144931762-144932031(-)$1	269	13	16	9.0000
ddd	chr16:89346919-89347168(-)$1	249	10	13	9.0000
III	chr4:515963-516237(+)$1	274	3	6	9.0000
HHH	chr19:58991519-58991818(-)$1	299	4	7	9.0000
:CC	chr19:2425971-2426224(-)$1	253	0	3	9.0000
]ff	chr1:144932404-144932642(-)$1	238	129	132	9.0000
=[a	chr4:1229004-1229246(-)$1	242	34	37	9.0000
FFF	chr12:124430793-124431092(-)$1	299	20	23	9.0000
EEE	chr7:1888367-1888612(-)$1	245	11	14	9.0000
ccc	chr8:144343525-144343784(+)$1	259	23	26	9.0000
ccd	chr19:15348962-15349227(-)$1	265	51	54	9.0000
B{C	chr16:87733216-87733460(-)$1	244	30	33	9.0000
eem	chr19:58772042-58772295(+)$1	253	65	68	9.0000
lll	chr16:87733260-87733514(-)$1	254	15	18	9.0000
:HH	chr7:1132868-1133113(-)$1	245	1	4	9.0000
mbb	chr19:1472446-1472699(-)$1	253	11	14	9.0000
EEE	chr19:59084322-59084577(-)$1	255	31	34	9.0000
GGG	chr7:1887640-1887902(-)$1	262	6	9	9.0000
ggg	chr1:144932212-144932487(-)$1	275	24	27	9.0000
ddd	chr7:1131018-1131308(-)$1	290	3	6	9.0000
hhh	chr17:27404291-27404546(-)$1	255	0	3	9.0000
FFF	chr21:45181606-45181866(+)$1	260	10	13	9.0000
44g	chr2:25042924-25043220(+)$1	296	42	45	9.0000
ee[	chr16:85646700-85646990(+)$1	290	54	57	9.0000
a]d	chr4:761163-761374(-)$1	211	48	51	9.0000
ggg	chr1:150946826-150947075(-)$1	249	24	27	9.0000
eee	chr1:1028060-1028323(-)$1	263	8	11	9.0000
mmf	chr16:87736108-87736346(-)$1	238	34	37	9.0000
:BB	chr3:128209050-128209294(+)$1	244	1	4	9.0000
ppp	chr17:46655748-46655990(-)$1	242	59	62	9.0000
b[c	chr12:104697593-104697895(+)$1	302	9	12	9.0000
mmc	chr1:245026251-245026534(-)$1	283	35	38	9.0000
f%%	chr19:58991071-58991363(-)$1	292	33	36	9.0000
CKK	chr11:61583197-61583442(-)$1	245	16	19	9.0000
FFF	chr4:760842-761086(-)$1	244	234	237	9.0000
G{C	chr16:447710-447954(+)$1	244	22	25	9.0000
E{B	chr4:1229359-1229608(-)$1	249	20	23	9.0000
gg2	chr20:62330389-62330646(-)$1	257	34	37	9.0000
E{E	chr8:94753030-94753280(-)$1	250	17	20	9.0000
c]c	chr9:134350447-134350722(+)$1	275	52	55	9.0000
III	chr8:144342430-144342678(+)$1	248	6	9	9.0000
ggg	chr16:87730996-87731258(-)$1	262	52	55	9.0000
$dd	chr16:87734510-87734737(-)$1	227	32	35	9.0000
===	chr16:87735790-87736040(-)$1	250	22	25	9.0000
ggg	chr1:228581639-228581905(-)$1	266	0	3	9.0000
EDD	chr17:27404386-27404653(-)$1	267	10	13	9.0000
iii	chr19:1206001-1206284(+)$1	283	44	47	9.0000
ee]	chr12:132196060-132196346(+)$1	286	27	30	9.0000
[ee	chr1:32827762-32828056(-)$1	294	96	99	9.0000
FF{	chr11:58346512-58346870(+)$1	358	6	9	9.0000
{CC	chr16:89346809-89347062(-)$1	253	29	32	9.0000
2bb	chr9:138379962-138380190(+)$1	228	36	39	9.0000
dd[	chr17:8378145-8378435(+)$1	290	26	29	9.0000
dd]	chr13:108518837-108519094(-)$1	257	89	92	9.0000
GGG	chr9:134351211-134351462(+)$1	251	10	13	9.0000
EEE	chr10:102759598-102759822(+)$1	224	62	65	9.0000

#DB
)))	chr7:6522964-6523227(-)$1	1	33	36	9.0000
((.	chr16:75018775-75019059(-)$1	1	4	7	9.0000
((.	chr19:16187671-16187996(+)$1	1	28	31	9.0000
.((	chr4:1230048-1230289(-)$1	1	43	46	9.0000
)))	chr14:105714088-105714371(-)$1	1	11	14	9.0000
(..	chr16:89349945-89350249(-)$1	1	37	40	9.0000
(..	chr4:1229089-1229429(-)$1	1	18	21	9.0000
(..	chr8:144671309-144671573(-)$1	1	4	7	9.0000
.((	chr19:49841180-49841500(-)$1	1	1	4	9.0000
...	chr3:9851513-9851805(+)$1	1	17	20	9.0000
.((	chr14:105707714-105707977(-)$1	1	10	13	9.0000
(((	chr19:1470453-1470697(-)$1	1	27	30	9.0000
...	chr19:5112764-5113027(+)$1	1	94	97	9.0000
)))	chr16:69153681-69153924(-)$1	1	78	81	9.0000
(((	chr17:75423125-75423435(+)$1	1	14	17	9.0000
(.(	chr2:97535591-97535833(-)$1	1	15	18	9.0000
)..	chr6:3271374-3271636(+)$1	1	64	67	9.0000
(((	chr19:1474155-1474388(-)$1	1	1	4	9.0000
)).	chr21:45223582-45223805(+)$1	1	75	78	9.0000
.))	chr7:1007641-1007890(-)$1	1	43	46	9.0000
..)	chr2:47747889-47748150(+)$1	1	7	10	9.0000
(..	chr12:104697385-104697719(+)$1	1	8	11	9.0000
.((	chr10:3171154-3171412(+)$1	1	48	51	9.0000
((.	chr3:128211654-128211981(+)$1	1	67	70	9.0000
(.(	chr11:843333-843609(+)$1	1	24	27	9.0000
..(	chr16:87736793-87737050(-)$1	1	64	67	9.0000
((.	chr4:760716-760963(-)$1	1	111	114	9.0000
(((	chr9:134350586-134350828(+)$1	1	17	20	9.0000
)))	chr19:45166253-45166498(+)$1	1	49	52	9.0000
.((	chr4:1228553-1228828(-)$1	1	11	14	9.0000
(..	chr16:87737546-87737801(-)$1	1	8	11	9.0000
...	chr1:182360246-182360488(-)$1	1	2	5	9.0000
.((	chr8:144343074-144343337(+)$1	1	8	11	9.0000
(((	chr19:41770829-41771098(+)$1	1	14	17	9.0000
.((	chr22:50013550-50013848(-)$1	1	13	16	9.0000
..)	chr17:62893384-62893718(-)$1	1	61	64	9.0000
.((	chr3:33481546-33481796(-)$1	1	0	3	9.0000
)..	chr16:29678255-29678571(+)$1	1	60	63	9.0000
..(	chr7:1888969-1889214(-)$1	1	22	25	9.0000
.((	chr8:94752698-94752925(-)$1	1	9	12	9.0000
(((	chr1:1284364-1284633(-)$1	1	35	38	9.0000
.).	chr4:2286945-2287246(-)$1	1	56	59	9.0000
.((	chr12:124968180-124968418(-)$1	1	30	33	9.0000
(..	chr9:134350651-134350920(+)$1	1	9	12	9.0000
(((	chr1:144931762-144932031(-)$1	1	13	16	9.0000
)))	chr16:89346919-89347168(-)$1	1	10	13	9.0000
(((	chr4:515963-516237(+)$1	1	3	6	9.0000
(((	chr19:58991519-58991818(-)$1	1	4	7	9.0000
.((	chr19:2425971-2426224(-)$1	1	0	3	9.0000
.))	chr1:144932404-144932642(-)$1	1	129	132	9.0000
(.(	chr4:1229004-1229246(-)$1	1	34	37	9.0000
(((	chr12:124430793-124431092(-)$1	1	20	23	9.0000
(((	chr7:1888367-1888612(-)$1	1	11	14	9.0000
)))	chr8:144343525-144343784(+)$1	1	23	26	9.0000
)))	chr19:15348962-15349227(-)$1	1	51	54	9.0000
(.(	chr16:87733216-87733460(-)$1	1	30	33	9.0000
((.	chr19:58772042-58772295(+)$1	1	65	68	9.0000
...	chr16:87733260-87733514(-)$1	1	15	18	9.0000
.((	chr7:1132868-1133113(-)$1	1	1	4	9.0000
.))	chr19:1472446-1472699(-)$1	1	11	14	9.0000
(((	chr19:59084322-59084577(-)$1	1	31	34	9.0000
(((	chr7:1887640-1887902(-)$1	1	6	9	9.0000
)))	chr1:144932212-144932487(-)$1	1	24	27	9.0000
(((	chr7:1131018-1131308(-)$1	1	3	6	9.0000
(((	chr17:27404291-27404546(-)$1	1	0	3	9.0000
(((	chr21:45181606-45181866(+)$1	1	10	13	9.0000
..)	chr2:25042924-25043220(+)$1	1	42	45	9.0000
((.	chr16:85646700-85646990(+)$1	1	54	57	9.0000
).)	chr4:761163-761374(-)$1	1	48	51	9.0000
(((	chr1:150946826-150947075(-)$1	1	24	27	9.0000
(((	chr1:1028060-1028323(-)$1	1	8	11	9.0000
..)	chr16:87736108-87736346(-)$1	1	34	37	9.0000
.((	chr3:128209050-128209294(+)$1	1	1	4	9.0000
...	chr17:46655748-46655990(-)$1	1	59	62	9.0000
(.(	chr12:104697593-104697895(+)$1	1	9	12	9.0000
..)	chr1:245026251-245026534(-)$1	1	35	38	9.0000
(..	chr19:58991071-58991363(-)$1	1	33	36	9.0000
(..	chr11:61583197-61583442(-)$1	1	16	19	9.0000
)))	chr4:760842-761086(-)$1	1	234	237	9.0000
(.(	chr16:447710-447954(+)$1	1	22	25	9.0000
(.(	chr4:1229359-1229608(-)$1	1	20	23	9.0000
)).	chr20:62330389-62330646(-)$1	1	34	37	9.0000
(.(	chr8:94753030-94753280(-)$1	1	17	20	9.0000
).)	chr9:134350447-134350722(+)$1	1	52	55	9.0000
(((	chr8:144342430-144342678(+)$1	1	6	9	9.0000
(((	chr16:87730996-87731258(-)$1	1	52	55	9.0000
.((	chr16:87734510-87734737(-)$1	1	32	35	9.0000
(((	chr16:87735790-87736040(-)$1	1	22	25	9.0000
(((	chr1:228581639-228581905(-)$1	1	0	3	9.0000
(((	chr17:27404386-27404653(-)$1	1	10	13	9.0000
(((	chr19:1206001-1206284(+)$1	1	44	47	9.0000
)).	chr12:132196060-132196346(+)$1	1	27	30	9.0000
.((	chr1:32827762-32828056(-)$1	1	96	99	9.0000
((.	chr11:58346512-58346870(+)$1	1	6	9	9.0000
.((	chr16:89346809-89347062(-)$1	1	29	32	9.0000
.))	chr9:138379962-138380190(+)$1	1	36	39	9.0000
((.	chr17:8378145-8378435(+)$1	1	26	29	9.0000
)).	chr13:108518837-108519094(-)$1	1	89	92	9.0000
(((	chr9:134351211-134351462(+)$1	1	10	13	9.0000
(((	chr10:102759598-102759822(+)$1	1	62	65	9.0000

#PSSM
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	
G : 0.90	g : 0.09	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_transcript_m2_run2.nuc.txt

#NT
GGCCC	chr1:39901264-39901517(+)$1	253	22	27	15.0000
GGCCC	chr17:8407911-8408177(-)$1	266	188	193	15.0000
GGCCC	chrX:153583323-153583535(-)$1	212	61	66	15.0000
GGCCC	chr14:65261988-65262296(-)$1	308	97	102	15.0000
GGCCC	chr11:61079154-61079414(-)$1	260	139	144	15.0000
GGCCC	chr12:49432265-49432518(-)$1	253	74	79	15.0000
GGCCC	chr19:18956695-18956959(+)$1	264	97	102	15.0000
GGCCC	chr5:154135049-154135335(+)$1	286	161	166	15.0000
GGCCC	chr2:231921487-231921795(+)$1	308	179	184	15.0000
GGCCC	chr1:16053890-16054144(+)$1	254	220	225	15.0000
GGCCC	chr19:17343064-17343361(-)$1	297	178	183	15.0000
GGCCC	chr8:37756800-37757054(-)$1	254	194	199	15.0000
GGCCC	chr15:63930507-63930755(-)$1	248	136	141	15.0000
ggccc	chr22:23523031-23523290(+)$1	259	72	77	15.0000
GGCCC	chr19:42407369-42407617(+)$1	248	201	206	15.0000
ggccc	chr16:89556554-89556842(-)$1	288	53	58	15.0000
GGCCC	chr4:140222781-140223074(+)$1	293	274	279	15.0000
GGCCC	chr12:56522206-56522492(+)$1	286	26	31	15.0000
GGCCC	chr2:96955437-96955657(-)$1	220	168	173	15.0000
GGCCC	chr1:19536511-19536774(-)$1	263	132	137	15.0000
GGCCC	chrX:53564485-53564751(-)$1	266	240	245	15.0000
GGCCC	chr9:35703461-35703675(-)$1	214	76	81	15.0000
GGCCC	chrX:153582713-153582951(-)$1	238	99	104	15.0000
GGCCC	chr17:27010284-27010503(+)$1	219	12	17	15.0000
GGCCC	chr8:48805821-48806047(-)$1	226	209	214	15.0000
GGCCC	chr19:2434259-2434513(-)$1	254	164	169	15.0000
GGCCC	chr14:102471285-102471512(+)$1	227	92	97	15.0000
GGCCC	chr19:1969670-1969975(+)$1	305	227	232	15.0000
GGCCC	chr9:139370950-139371199(-)$1	249	114	119	15.0000
GGCCC	chr12:49431487-49431745(-)$1	258	213	218	15.0000
GGCCC	chr10:3190281-3190551(-)$1	270	258	263	15.0000
GGCCC	chr19:41117060-41117326(+)$1	266	150	155	15.0000
GGCCC	chr15:91017648-91017956(+)$1	308	281	286	15.0000
GGCCC	chr17:80045460-80045679(-)$1	219	30	35	15.0000
ggcCC	chr5:5422728-5423056(+)$1	328	51	56	15.0000
GGCCC	chr1:19437136-19437382(-)$1	246	163	168	15.0000
ggccc	chr19:14200536-14200798(-)$1	262	152	157	15.0000
GGCCC	chr14:65253487-65253785(-)$1	298	126	131	15.0000
GGCCC	chr1:38434924-38435170(-)$1	246	116	121	15.0000
GGCCC	chr2:136623644-136623888(-)$1	244	114	119	15.0000
GGCCC	chr2:54853032-54853309(+)$1	277	248	253	15.0000
GGCCC	chr7:150068834-150069060(+)$1	226	14	19	15.0000
GGCCC	chr19:50912772-50913017(+)$1	245	162	167	15.0000
GGCCC	chr16:30715384-30715656(+)$1	272	129	134	15.0000
GGCCC	chrX:153580933-153581142(-)$1	209	45	50	15.0000
GGCCC	chr1:193038500-193038773(+)$1	273	169	174	15.0000
GGCCC	chr3:184040778-184041001(+)$1	223	149	154	15.0000

#otherMatches

#Struct PSSM
IIIII	chrX:153594307-153594526(-)$1	219	10	15	15.0000
BBLLL	chr1:39901264-39901517(+)$1	253	22	27	15.0000
ebbmm	chr17:8407911-8408177(-)$1	266	188	193	15.0000
ddddd	chrX:153583323-153583535(-)$1	212	61	66	15.0000
$a[bb	chr14:65261988-65262296(-)$1	308	97	102	15.0000
DDCCC	chr11:61079154-61079414(-)$1	260	139	144	15.0000
FFFFF	chr12:49432265-49432518(-)$1	253	74	79	15.0000
#cccm	chr19:18956695-18956959(+)$1	264	97	102	15.0000
ccc!!	chr5:154135049-154135335(+)$1	286	161	166	15.0000
dddoo	chr2:231921487-231921795(+)$1	308	179	184	15.0000
22bbc	chr1:16053890-16054144(+)$1	254	220	225	15.0000
ggggg	chr19:17343064-17343361(-)$1	297	178	183	15.0000
IIIII	chr8:37756800-37757054(-)$1	254	194	199	15.0000
ddd33	chr15:63930507-63930755(-)$1	248	136	141	15.0000
[bbll	chr22:23523031-23523290(+)$1	259	72	77	15.0000
eEEEE	chr19:42407369-42407617(+)$1	248	201	206	15.0000
FFDDD	chr16:89556554-89556842(-)$1	288	53	58	15.0000
]eeee	chr4:140222781-140223074(+)$1	293	274	279	15.0000
g[ggg	chr12:56522206-56522492(+)$1	286	26	31	15.0000
eeeee	chr2:96955437-96955657(-)$1	220	168	173	15.0000
ddddc	chr1:19536511-19536774(-)$1	263	132	137	15.0000
FF~~~	chrX:53564485-53564751(-)$1	266	240	245	15.0000
occc]	chr9:35703461-35703675(-)$1	214	76	81	15.0000
dd!!b	chrX:153582713-153582951(-)$1	238	99	104	15.0000
pppdd	chr17:27010284-27010503(+)$1	219	12	17	15.0000
eeeec	chr8:48805821-48806047(-)$1	226	209	214	15.0000
::FFF	chr19:2434259-2434513(-)$1	254	164	169	15.0000
fffff	chr14:102471285-102471512(+)$1	227	92	97	15.0000
ggggg	chr19:1969670-1969975(+)$1	305	227	232	15.0000
bbmmm	chr9:139370950-139371199(-)$1	249	114	119	15.0000
HHHHH	chr12:49431487-49431745(-)$1	258	213	218	15.0000
}DDDD	chr10:3190281-3190551(-)$1	270	258	263	15.0000
ddd22	chr19:41117060-41117326(+)$1	266	150	155	15.0000
EEEdd	chr15:91017648-91017956(+)$1	308	281	286	15.0000
cccmm	chr17:80045460-80045679(-)$1	219	30	35	15.0000
qffff	chr5:5422728-5423056(+)$1	328	51	56	15.0000
dd444	chr1:19437136-19437382(-)$1	246	163	168	15.0000
:dddd	chr19:14200536-14200798(-)$1	262	152	157	15.0000
ddddc	chr14:65253487-65253785(-)$1	298	126	131	15.0000
fffnn	chr1:38434924-38435170(-)$1	246	116	121	15.0000
ccddd	chr2:136623644-136623888(-)$1	244	114	119	15.0000
iiiiF	chr2:54853032-54853309(+)$1	277	248	253	15.0000
eeeff	chr7:150068834-150069060(+)$1	226	14	19	15.0000
!hhhh	chr19:50912772-50913017(+)$1	245	162	167	15.0000
eeeee	chr16:30715384-30715656(+)$1	272	129	134	15.0000
DDDDd	chrX:153580933-153581142(-)$1	209	45	50	15.0000
=====	chr1:193038500-193038773(+)$1	273	169	174	15.0000
ffffc	chr3:184040778-184041001(+)$1	223	149	154	15.0000

#DB
(((((	chrX:153594307-153594526(-)$1	1	10	15	15.0000
((...	chr1:39901264-39901517(+)$1	1	22	27	15.0000
(((..	chr17:8407911-8408177(-)$1	1	188	193	15.0000
))))(	chrX:153583323-153583535(-)$1	1	61	66	15.0000
.(.((	chr14:65261988-65262296(-)$1	1	97	102	15.0000
)))))	chr11:61079154-61079414(-)$1	1	139	144	15.0000
(((((	chr12:49432265-49432518(-)$1	1	74	79	15.0000
.(((.	chr19:18956695-18956959(+)$1	1	97	102	15.0000
(((..	chr5:154135049-154135335(+)$1	1	161	166	15.0000
(((..	chr2:231921487-231921795(+)$1	1	179	184	15.0000
..))(	chr1:16053890-16054144(+)$1	1	220	225	15.0000
(((((	chr19:17343064-17343361(-)$1	1	178	183	15.0000
)))))	chr8:37756800-37757054(-)$1	1	194	199	15.0000
)))..	chr15:63930507-63930755(-)$1	1	136	141	15.0000
.((..	chr22:23523031-23523290(+)$1	1	72	77	15.0000
)))))	chr19:42407369-42407617(+)$1	1	201	206	15.0000
(((((	chr16:89556554-89556842(-)$1	1	53	58	15.0000
.))))	chr4:140222781-140223074(+)$1	1	274	279	15.0000
(.(((	chr12:56522206-56522492(+)$1	1	26	31	15.0000
)))))	chr2:96955437-96955657(-)$1	1	168	173	15.0000
)))))	chr1:19536511-19536774(-)$1	1	132	137	15.0000
))...	chrX:53564485-53564751(-)$1	1	240	245	15.0000
.))).	chr9:35703461-35703675(-)$1	1	76	81	15.0000
((..(	chrX:153582713-153582951(-)$1	1	99	104	15.0000
...))	chr17:27010284-27010503(+)$1	1	12	17	15.0000
)))))	chr8:48805821-48806047(-)$1	1	209	214	15.0000
..)))	chr19:2434259-2434513(-)$1	1	164	169	15.0000
)))))	chr14:102471285-102471512(+)$1	1	92	97	15.0000
)))))	chr19:1969670-1969975(+)$1	1	227	232	15.0000
((...	chr9:139370950-139371199(-)$1	1	114	119	15.0000
)))))	chr12:49431487-49431745(-)$1	1	213	218	15.0000
.))))	chr10:3190281-3190551(-)$1	1	258	263	15.0000
)))..	chr19:41117060-41117326(+)$1	1	150	155	15.0000
)))((	chr15:91017648-91017956(+)$1	1	281	286	15.0000
(((..	chr17:80045460-80045679(-)$1	1	30	35	15.0000
.))))	chr5:5422728-5423056(+)$1	1	51	56	15.0000
))...	chr1:19437136-19437382(-)$1	1	163	168	15.0000
.((((	chr19:14200536-14200798(-)$1	1	152	157	15.0000
)))))	chr14:65253487-65253785(-)$1	1	126	131	15.0000
(((..	chr1:38434924-38435170(-)$1	1	116	121	15.0000
(((((	chr2:136623644-136623888(-)$1	1	114	119	15.0000
)))))	chr2:54853032-54853309(+)$1	1	248	253	15.0000
(((((	chr7:150068834-150069060(+)$1	1	14	19	15.0000
.((((	chr19:50912772-50913017(+)$1	1	162	167	15.0000
)((((	chr16:30715384-30715656(+)$1	1	129	134	15.0000
(((((	chrX:153580933-153581142(-)$1	1	45	50	15.0000
)))))	chr1:193038500-193038773(+)$1	1	169	174	15.0000
)))))	chr3:184040778-184041001(+)$1	1	149	154	15.0000

#PSSM
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	
C : 0.91	c : 0.08	
C : 0.93	c : 0.06	
C : 0.93	c : 0.06	

#score	720.0000000000001
#seq	48
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_UTR_m1_run2.nuc.txt

#NT
UAACA	chr2:182794460-182794783(+)$1	323	146	151	14.9999
UAACA	chr3:48014435-48014727(-)$1	292	149	154	14.9999
UAACA	chr3:194997079-194997390(-)$1	311	247	252	14.9999
UAACA	chr19:39369331-39369619(-)$1	288	5	10	14.9999
UAACA	chr12:30872369-30872641(-)$1	272	101	106	14.9999
UAACA	chr10:860347-860666(-)$1	319	243	248	14.9999
UAACA	chr4:128607243-128607572(+)$1	329	110	115	14.9999
UAACA	chr22:19956306-19956567(+)$1	261	157	162	14.9999
UAACA	chr14:97001018-97001322(+)$1	304	118	123	14.9999
UAACA	chr21:30718137-30718487(+)$1	350	135	140	14.9999
UAACA	chr6:28123442-28123718(+)$1	276	110	115	14.9999
UAACA	chr10:93622933-93623245(+)$1	312	32	37	14.9999
UAACA	chr2:209169984-209170301(+)$1	317	62	67	14.9999
uaaca	chr1:117645299-117645530(+)$1	231	138	143	14.9999
UAACA	chr3:176741351-176741741(-)$1	390	17	22	14.9999
UAACA	chr13:98046116-98046408(+)$1	292	52	57	14.9999
UAACA	chr5:118877696-118878030(+)$1	334	103	108	14.9999
UAACA	chr11:68505360-68505709(-)$1	349	174	179	14.9999
UAACA	chr18:51905481-51905779(+)$1	298	19	24	14.9999
UAACA	chr9:86584384-86584720(-)$1	336	130	135	14.9999
UAACA	chr6:127610057-127610343(-)$1	286	130	135	14.9999
UAACA	chr1:109427889-109428205(+)$1	316	136	141	14.9999
uaaca	chr4:140339699-140340014(+)$1	315	122	127	14.9999
uAACA	chr1:241795040-241795307(-)$1	267	110	115	14.9999
UAACA	chr1:16266718-16267022(+)$1	304	139	144	14.9999
UAACA	chr4:37863286-37863631(+)$1	345	137	142	14.9999
UAACA	chr1:198291199-198291472(+)$1	273	78	83	14.9999
UAACA	chr2:149449306-149449563(+)$1	257	168	173	14.9999
UAACA	chr15:66783687-66783961(+)$1	274	131	136	14.9999
UAACA	chr2:152659020-152659287(-)$1	267	17	22	14.9999
UAACA	chr20:57475320-57475575(+)$1	255	103	108	14.9999
UAACA	chr9:36339364-36339677(-)$1	313	178	183	14.9999
UAACA	chr18:34374755-34375057(-)$1	302	120	125	14.9999
UAACA	chr1:114520116-114520417(+)$1	301	112	117	14.9999
UAACA	chr21:40717940-40718195(-)$1	255	170	175	14.9999
UAACA	chr1:241793615-241793951(-)$1	336	99	104	14.9999
UAACA	chr1:28564444-28564714(+)$1	270	136	141	14.9999
UAACA	chr15:83685775-83686116(-)$1	341	162	167	14.9999
UAACA	chr12:51381271-51381613(-)$1	342	141	146	14.9999
UAACA	chr5:89812161-89812487(-)$1	326	157	162	14.9999
UAACA	chr18:214188-214502(+)$1	314	109	114	14.9999
UAACA	chr7:64293548-64293841(+)$1	293	20	25	14.9999
UAACA	chr21:40717930-40718140(-)$1	210	115	120	14.9999
UAACA	chr2:149449363-149449618(+)$1	255	111	116	14.9999
UAACA	chr5:148884498-148884857(-)$1	359	114	119	14.9999
UAACA	chr8:62588111-62588421(-)$1	310	112	117	14.9999
UAACA	chr18:673907-674219(-)$1	312	262	267	14.9999
UAACA	chr6:36454964-36455238(+)$1	274	120	125	14.9999
uaaca	chr5:87497987-87498251(-)$1	264	14	19	14.9999
UAACA	chr19:45910519-45910785(-)$1	266	13	18	14.9999
UAACA	chr12:70731238-70731542(+)$1	304	117	122	14.9999
uaaca	chr2:149449603-149449895(+)$1	292	111	116	14.9999
UAACA	chr1:193222622-193222923(+)$1	301	128	133	14.9999
UAACA	chr4:77956855-77957221(+)$1	366	181	186	14.9999
UAACA	chr6:91260448-91260753(-)$1	305	20	25	14.9999
UAACA	chr6:108365477-108365790(-)$1	313	45	50	14.9999
uaaca	chr7:158433534-158433829(-)$1	295	164	169	14.9999
uaaca	chr1:117645209-117645484(+)$1	275	228	233	14.9999
UAACA	chr10:18964220-18964508(+)$1	288	20	25	14.9999
UAACA	chr16:69737618-69737881(+)$1	263	63	68	14.9999
uaaca	chr1:117645330-117645583(+)$1	253	107	112	14.9999
UAACA	chr2:242291553-242291871(+)$1	318	131	136	14.9999
UAACA	chr1:47143916-47144204(-)$1	288	119	124	14.9999
UAACA	chr8:64122488-64122745(+)$1	257	111	116	14.9999
UAACA	chr14:69846889-69847139(-)$1	250	183	188	14.9999
UAACA	chr7:77569619-77569927(+)$1	308	147	152	14.9999
UAACA	chr3:178954091-178954348(+)$1	257	95	100	14.9999
UAACA	chr12:76747159-76747509(-)$1	350	115	120	14.9999
uaaca	chr5:87498051-87498349(-)$1	298	44	49	14.9999
UAACA	chr16:24801218-24801520(+)$1	302	106	111	14.9999

#otherMatches

#Struct PSSM
yyyyy	chr12:122617074-122617380(+)$1	306	128	133	14.9999
^^^^^	chr2:182794460-182794783(+)$1	323	146	151	14.9999
^^^^^	chr3:48014435-48014727(-)$1	292	149	154	14.9999
e::::	chr3:194997079-194997390(-)$1	311	247	252	14.9999
ffqqq	chr19:39369331-39369619(-)$1	288	5	10	14.9999
ddCCC	chr12:30872369-30872641(-)$1	272	101	106	14.9999
g::::	chr10:860347-860666(-)$1	319	243	248	14.9999
uuuff	chr4:128607243-128607572(+)$1	329	110	115	14.9999
FFF::	chr22:19956306-19956567(+)$1	261	157	162	14.9999
c[ccc	chr14:97001018-97001322(+)$1	304	118	123	14.9999
g::::	chr21:30718137-30718487(+)$1	350	135	140	14.9999
^^^^^	chr6:28123442-28123718(+)$1	276	110	115	14.9999
KGGGG	chr10:93622933-93623245(+)$1	312	32	37	14.9999
hlllh	chr2:209169984-209170301(+)$1	317	62	67	14.9999
vvvvv	chr1:117645299-117645530(+)$1	231	138	143	14.9999
FFF::	chr3:176741351-176741741(-)$1	390	17	22	14.9999
gzzzz	chr13:98046116-98046408(+)$1	292	52	57	14.9999
EE::d	chr5:118877696-118878030(+)$1	334	103	108	14.9999
ffccc	chr11:68505360-68505709(-)$1	349	174	179	14.9999
:::::	chr18:51905481-51905779(+)$1	298	19	24	14.9999
:::::	chr9:86584384-86584720(-)$1	336	130	135	14.9999
^^^^^	chr6:127610057-127610343(-)$1	286	130	135	14.9999
mmccc	chr1:109427889-109428205(+)$1	316	136	141	14.9999
ggggg	chr4:140339699-140340014(+)$1	315	122	127	14.9999
fffff	chr1:241795040-241795307(-)$1	267	110	115	14.9999
PPFFF	chr1:16266718-16267022(+)$1	304	139	144	14.9999
::EEE	chr4:37863286-37863631(+)$1	345	137	142	14.9999
77777	chr1:198291199-198291472(+)$1	273	78	83	14.9999
+++++	chr2:149449306-149449563(+)$1	257	168	173	14.9999
gg^^^	chr15:66783687-66783961(+)$1	274	131	136	14.9999
eeee^	chr2:152659020-152659287(-)$1	267	17	22	14.9999
::ccc	chr20:57475320-57475575(+)$1	255	103	108	14.9999
:gggg	chr9:36339364-36339677(-)$1	313	178	183	14.9999
c"""c	chr18:34374755-34375057(-)$1	302	120	125	14.9999
e]ccc	chr1:114520116-114520417(+)$1	301	112	117	14.9999
d"""f	chr21:40717940-40718195(-)$1	255	170	175	14.9999
:::::	chr1:241793615-241793951(-)$1	336	99	104	14.9999
rrfff	chr1:28564444-28564714(+)$1	270	136	141	14.9999
EKKAJ	chr15:83685775-83686116(-)$1	341	162	167	14.9999
GGGGG	chr12:51381271-51381613(-)$1	342	141	146	14.9999
ppeee	chr5:89812161-89812487(-)$1	326	157	162	14.9999
sseee	chr18:214188-214502(+)$1	314	109	114	14.9999
dd]ee	chr7:64293548-64293841(+)$1	293	20	25	14.9999
::EEE	chr21:40717930-40718140(-)$1	210	115	120	14.9999
+++++	chr2:149449363-149449618(+)$1	255	111	116	14.9999
:::::	chr5:148884498-148884857(-)$1	359	114	119	14.9999
EEEEL	chr8:62588111-62588421(-)$1	310	112	117	14.9999
^^^^^	chr18:673907-674219(-)$1	312	262	267	14.9999
(((((	chr6:36454964-36455238(+)$1	274	120	125	14.9999
:::::	chr5:87497987-87498251(-)$1	264	14	19	14.9999
OOOOO	chr19:45910519-45910785(-)$1	266	13	18	14.9999
:::::	chr12:70731238-70731542(+)$1	304	117	122	14.9999
+++++	chr2:149449603-149449895(+)$1	292	111	116	14.9999
:::::	chr1:193222622-193222923(+)$1	301	128	133	14.9999
weeee	chr4:77956855-77957221(+)$1	366	181	186	14.9999
::ccc	chr6:91260448-91260753(-)$1	305	20	25	14.9999
cccee	chr6:108365477-108365790(-)$1	313	45	50	14.9999
}CCC}	chr7:158433534-158433829(-)$1	295	164	169	14.9999
??CCC	chr1:117645209-117645484(+)$1	275	228	233	14.9999
LDDDD	chr10:18964220-18964508(+)$1	288	20	25	14.9999
^^^^^	chr16:69737618-69737881(+)$1	263	63	68	14.9999
vvvvv	chr1:117645330-117645583(+)$1	253	107	112	14.9999
dd[cc	chr2:242291553-242291871(+)$1	318	131	136	14.9999
^^^^^	chr1:47143916-47144204(-)$1	288	119	124	14.9999
DDD{D	chr8:64122488-64122745(+)$1	257	111	116	14.9999
cdddd	chr14:69846889-69847139(-)$1	250	183	188	14.9999
fffff	chr7:77569619-77569927(+)$1	308	147	152	14.9999
gggg!	chr3:178954091-178954348(+)$1	257	95	100	14.9999
ffff:	chr12:76747159-76747509(-)$1	350	115	120	14.9999
%%%%c	chr5:87498051-87498349(-)$1	298	44	49	14.9999
7777f	chr16:24801218-24801520(+)$1	302	106	111	14.9999

#DB
.....	chr12:122617074-122617380(+)$1	1	128	133	14.9999
.....	chr2:182794460-182794783(+)$1	1	146	151	14.9999
.....	chr3:48014435-48014727(-)$1	1	149	154	14.9999
)....	chr3:194997079-194997390(-)$1	1	247	252	14.9999
((...	chr19:39369331-39369619(-)$1	1	5	10	14.9999
)))))	chr12:30872369-30872641(-)$1	1	101	106	14.9999
)....	chr10:860347-860666(-)$1	1	243	248	14.9999
...))	chr4:128607243-128607572(+)$1	1	110	115	14.9999
(((..	chr22:19956306-19956567(+)$1	1	157	162	14.9999
(.(((	chr14:97001018-97001322(+)$1	1	118	123	14.9999
)....	chr21:30718137-30718487(+)$1	1	135	140	14.9999
.....	chr6:28123442-28123718(+)$1	1	110	115	14.9999
.((((	chr10:93622933-93623245(+)$1	1	32	37	14.9999
(...)	chr2:209169984-209170301(+)$1	1	62	67	14.9999
.....	chr1:117645299-117645530(+)$1	1	138	143	14.9999
(((..	chr3:176741351-176741741(-)$1	1	17	22	14.9999
(....	chr13:98046116-98046408(+)$1	1	52	57	14.9999
((..(	chr5:118877696-118878030(+)$1	1	103	108	14.9999
))(((	chr11:68505360-68505709(-)$1	1	174	179	14.9999
.....	chr18:51905481-51905779(+)$1	1	19	24	14.9999
.....	chr9:86584384-86584720(-)$1	1	130	135	14.9999
.....	chr6:127610057-127610343(-)$1	1	130	135	14.9999
..)))	chr1:109427889-109428205(+)$1	1	136	141	14.9999
)))))	chr4:140339699-140340014(+)$1	1	122	127	14.9999
(((((	chr1:241795040-241795307(-)$1	1	110	115	14.9999
..(((	chr1:16266718-16267022(+)$1	1	139	144	14.9999
..(((	chr4:37863286-37863631(+)$1	1	137	142	14.9999
.....	chr1:198291199-198291472(+)$1	1	78	83	14.9999
.....	chr2:149449306-149449563(+)$1	1	168	173	14.9999
((...	chr15:66783687-66783961(+)$1	1	131	136	14.9999
((((.	chr2:152659020-152659287(-)$1	1	17	22	14.9999
..(((	chr20:57475320-57475575(+)$1	1	103	108	14.9999
.((((	chr9:36339364-36339677(-)$1	1	178	183	14.9999
(...(	chr18:34374755-34375057(-)$1	1	120	125	14.9999
).)))	chr1:114520116-114520417(+)$1	1	112	117	14.9999
(...(	chr21:40717940-40718195(-)$1	1	170	175	14.9999
.....	chr1:241793615-241793951(-)$1	1	99	104	14.9999
..)))	chr1:28564444-28564714(+)$1	1	136	141	14.9999
(..((	chr15:83685775-83686116(-)$1	1	162	167	14.9999
(((((	chr12:51381271-51381613(-)$1	1	141	146	14.9999
..)))	chr5:89812161-89812487(-)$1	1	157	162	14.9999
..)))	chr18:214188-214502(+)$1	1	109	114	14.9999
)).))	chr7:64293548-64293841(+)$1	1	20	25	14.9999
..)))	chr21:40717930-40718140(-)$1	1	115	120	14.9999
.....	chr2:149449363-149449618(+)$1	1	111	116	14.9999
.....	chr5:148884498-148884857(-)$1	1	114	119	14.9999
((((.	chr8:62588111-62588421(-)$1	1	112	117	14.9999
.....	chr18:673907-674219(-)$1	1	262	267	14.9999
.....	chr6:36454964-36455238(+)$1	1	120	125	14.9999
.....	chr5:87497987-87498251(-)$1	1	14	19	14.9999
.....	chr19:45910519-45910785(-)$1	1	13	18	14.9999
.....	chr12:70731238-70731542(+)$1	1	117	122	14.9999
.....	chr2:149449603-149449895(+)$1	1	111	116	14.9999
.....	chr1:193222622-193222923(+)$1	1	128	133	14.9999
.))))	chr4:77956855-77957221(+)$1	1	181	186	14.9999
..(((	chr6:91260448-91260753(-)$1	1	20	25	14.9999
)))((	chr6:108365477-108365790(-)$1	1	45	50	14.9999
.))).	chr7:158433534-158433829(-)$1	1	164	169	14.9999
..)))	chr1:117645209-117645484(+)$1	1	228	233	14.9999
.((((	chr10:18964220-18964508(+)$1	1	20	25	14.9999
.....	chr16:69737618-69737881(+)$1	1	63	68	14.9999
.....	chr1:117645330-117645583(+)$1	1	107	112	14.9999
((.((	chr2:242291553-242291871(+)$1	1	131	136	14.9999
.....	chr1:47143916-47144204(-)$1	1	119	124	14.9999
(((.(	chr8:64122488-64122745(+)$1	1	111	116	14.9999
)))))	chr14:69846889-69847139(-)$1	1	183	188	14.9999
(((((	chr7:77569619-77569927(+)$1	1	147	152	14.9999
((((.	chr3:178954091-178954348(+)$1	1	95	100	14.9999
)))).	chr12:76747159-76747509(-)$1	1	115	120	14.9999
....(	chr5:87498051-87498349(-)$1	1	44	49	14.9999
....)	chr16:24801218-24801520(+)$1	1	106	111	14.9999

#PSSM
U : 0.87	u : 0.12	
A : 0.88	a : 0.11	
A : 0.88	a : 0.11	
C : 0.88	c : 0.11	
A : 0.88	a : 0.11	

#score	1064.9999999999998
#seq	71
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_UTR_m1_run2.nuc.txt

#NT
ggcugggg	chr7:157130044-157130366(+)$1	322	4	12	20.1940
ggcggggg	chr1:245026247-245026533(-)$1	286	119	127	17.0597
GGCCGGGG	chr19:1472251-1472519(-)$1	268	248	256	16.7611
GGCUGUGG	chr14:105259023-105259305(-)$1	282	247	255	16.0895
CGCUGGGG	chr5:661991-662260(+)$1	269	26	34	15.9402
GGAUGGGG	chr8:67976688-67976975(+)$1	287	62	70	16.0149
ggcugggg	chr4:2936000-2936301(-)$1	301	247	255	20.1940
GGCGGGGG	chr16:89787344-89787655(+)$1	311	103	111	17.0597
GGCAGGGG	chr1:26232150-26232455(-)$1	305	278	286	16.5373
ggcugggg	chr4:2935786-2936069(-)$1	283	15	23	20.1940
GGCUUGGG	chr20:62331337-62331619(-)$1	282	147	155	16.0895
ggcggggg	chr1:245026112-245026435(-)$1	323	21	29	17.0597
GGCUGGGG	chr16:28877056-28877291(+)$1	235	98	106	20.1940
ggcggggg	chr16:53164975-53165274(+)$1	299	177	185	17.0597
GGGUGGGG	chr16:90015682-90015956(+)$1	274	102	110	16.3134
GGCUGGGC	chr22:20110054-20110315(+)$1	261	146	154	15.7910
GGUUGGGG	chr4:103748166-103748452(-)$1	286	0	8	16.2388
GGUUGGGG	chr19:2270192-2270440(+)$1	248	28	36	16.2388
GGCUGAGG	chr16:85646736-85646979(+)$1	243	19	27	16.3880
GGCUGGGG	chr14:105259204-105259430(-)$1	226	16	24	20.1940
GGCGGGGG	chr19:1470155-1470447(-)$1	292	91	99	17.0597
GGCGGGGG	chr11:65343573-65343812(+)$1	239	190	198	17.0597
GGCUGGGC	chrX:53710800-53711108(-)$1	308	102	110	15.7910
GGCUUGGG	chr5:154136743-154137015(+)$1	272	212	220	16.0895
GGCAGGGG	chr22:50357198-50357498(+)$1	300	151	159	16.5373
GGCUGGGC	chr1:228596395-228596661(+)$1	266	257	265	15.7910
GGCCGGGG	chr7:77167204-77167456(+)$1	252	87	95	16.7611
GGGUGGGG	chr7:5460766-5461027(-)$1	261	116	124	16.3134
GGCGGGGG	chr8:71314076-71314346(-)$1	270	25	33	17.0597
GGGUGGGG	chr3:187455214-187455489(-)$1	275	119	127	16.3134
GGCUGAGG	chr19:1879451-1879742(-)$1	291	4	12	16.3880
GGCUGAGG	chr6:53213228-53213507(-)$1	279	144	152	16.3880
GGCUUGGG	chr9:139235979-139236206(+)$1	227	93	101	16.0895
GGCUGGGG	chr16:1361821-1362079(+)$1	258	45	53	20.1940
GGCUGGGC	chr19:1473961-1474226(-)$1	265	21	29	15.7910
cgcugggg	chr5:154136553-154136860(+)$1	307	70	78	15.9402
GGUUGGGG	chr11:126146194-126146433(+)$1	239	33	41	16.2388
gggugggg	chr2:20550309-20550593(-)$1	284	93	101	16.3134
GGCGGGGG	chr19:13262680-13262926(+)$1	246	111	119	17.0597
GGGUGGGG	chr19:50167631-50167869(-)$1	238	62	70	16.3134
GGCUGGGG	chr1:202776311-202776604(-)$1	293	34	42	20.1940
GGCUGAGG	chr11:611765-612088(+)$1	323	6	14	16.3880
GGCUGGGG	chr9:139249198-139249493(+)$1	295	176	184	20.1940
CGCUgggg	chr9:136214508-136214819(-)$1	311	32	40	15.9402
GGCUUGGG	chr22:50016189-50016427(-)$1	238	135	143	16.0895
GGCUGCGG	chr12:109124037-109124297(-)$1	260	110	118	16.0895
GGCUGGGG	chr3:195635821-195636075(-)$1	254	22	30	20.1940
CGCUGGGG	chr11:3013168-3013466(-)$1	298	17	25	15.9402
GGCCGGGG	chr19:1472134-1472390(-)$1	256	119	127	16.7611
GGCUGGGG	chr19:1881957-1882207(-)$1	250	102	110	20.1940
ggcuuggg	chr20:31172308-31172546(-)$1	238	216	224	16.0895
ggCUUGGG	chr1:155532314-155532655(-)$1	341	63	71	16.0895
GGCUGGGG	chr12:132402699-132403009(+)$1	310	64	72	20.1940
ggcggggg	chr19:42788120-42788363(+)$1	243	47	55	17.0597
GGUUGGGG	chr11:504432-504681(-)$1	249	1	9	16.2388
GGCUGGGG	chr16:4387421-4387698(-)$1	277	58	66	20.1940
GGCUGGGG	chr11:843611-843894(+)$1	283	195	203	20.1940
ggcugcgg	chr19:15443001-15443262(-)$1	261	7	15	16.0895
ggcugagg	chr21:46494479-46494704(+)$1	225	11	19	16.3880
GGCUGGGG	chr19:17355001-17355274(-)$1	273	47	55	20.1940
GGCUGGGG	chr12:109124145-109124520(-)$1	375	36	44	20.1940
GGCCGGgg	chr7:1579959-1580203(+)$1	244	56	64	16.7611
GGCUGUGG	chr21:45374461-45374725(+)$1	264	33	41	16.0895
CGCUGGGG	chr19:1470961-1471204(-)$1	243	23	31	15.9402
GGCUGAGG	chr20:62331052-62331312(-)$1	260	71	79	16.3880
GGCUGGGG	chr19:41771013-41771300(+)$1	287	104	112	20.1940

#otherMatches

#Struct PSSM
f[bbpppp	chr16:447640-447879(+)$1	239	8	16	16.7611
HHHHHHH{	chr7:157130044-157130366(+)$1	322	4	12	20.1940
dd[ggggg	chr1:245026247-245026533(-)$1	286	119	127	17.0597
IIIIIIII	chr19:1472251-1472519(-)$1	268	248	256	16.7611
}CCCYYCC	chr14:105259023-105259305(-)$1	282	247	255	16.0895
A{GGGGGG	chr5:661991-662260(+)$1	269	26	34	15.9402
EEEEKKEE	chr8:67976688-67976975(+)$1	287	62	70	16.0149
22bb]bb]	chr4:2936000-2936301(-)$1	301	247	255	20.1940
dd]fffff	chr16:89787344-89787655(+)$1	311	103	111	17.0597
!bbmmmmb	chr1:26232150-26232455(-)$1	305	278	286	16.5373
eeeegggg	chr4:2935786-2936069(-)$1	283	15	23	20.1940
cccmmmmc	chr20:62331337-62331619(-)$1	282	147	155	16.0895
dd[ggggg	chr1:245026112-245026435(-)$1	323	21	29	17.0597
b]bb]hhh	chr16:28877056-28877291(+)$1	235	98	106	20.1940
cccCCC{H	chr16:53164975-53165274(+)$1	299	177	185	17.0597
!!eeeee!	chr16:90015682-90015956(+)$1	274	102	110	16.3134
""bb[a[b	chr22:20110054-20110315(+)$1	261	146	154	15.7910
eeeee[bb	chr4:103748166-103748452(-)$1	286	0	8	16.2388
VVVVVVVV	chr19:2270192-2270440(+)$1	248	28	36	16.2388
FFFFFFOO	chr16:85646736-85646979(+)$1	243	19	27	16.3880
b[ccc[bb	chr14:105259204-105259430(-)$1	226	16	24	20.1940
"""ccc[e	chr19:1470155-1470447(-)$1	292	91	99	17.0597
}FFFFFF:	chr11:65343573-65343812(+)$1	239	190	198	17.0597
oohhhhhh	chrX:53710800-53711108(-)$1	308	102	110	15.7910
hhhh[ccc	chr5:154136743-154137015(+)$1	272	212	220	16.0895
ggggg:DD	chr22:50357198-50357498(+)$1	300	151	159	16.5373
eee:DDDD	chr1:228596395-228596661(+)$1	266	257	265	15.7910
eeeeea[g	chr7:77167204-77167456(+)$1	252	87	95	16.7611
EEEEEGGG	chr7:5460766-5461027(-)$1	261	116	124	16.3134
hhhhhh[b	chr8:71314076-71314346(-)$1	270	25	33	17.0597
iiiiifff	chr3:187455214-187455489(-)$1	275	119	127	16.3134
eeeee[gg	chr19:1879451-1879742(-)$1	291	4	12	16.3880
qqqqqqcc	chr6:53213228-53213507(-)$1	279	144	152	16.3880
[bb[dddd	chr9:139235979-139236206(+)$1	227	93	101	16.0895
ddddeeee	chr16:1361821-1362079(+)$1	258	45	53	20.1940
ggg!!ddd	chr19:1473961-1474226(-)$1	265	21	29	15.7910
:hhhhhhh	chr5:154136553-154136860(+)$1	307	70	78	15.9402
c[ddddbb	chr11:126146194-126146433(+)$1	239	33	41	16.2388
EE{CCCKK	chr2:20550309-20550593(-)$1	284	93	101	16.3134
ff[bbqqq	chr19:13262680-13262926(+)$1	246	111	119	17.0597
[eeeeeff	chr19:50167631-50167869(-)$1	238	62	70	16.3134
mdddd:DD	chr1:202776311-202776604(-)$1	293	34	42	20.1940
cccmmmmc	chr11:611765-612088(+)$1	323	6	14	16.3880
44cccccc	chr9:139249198-139249493(+)$1	295	176	184	20.1940
C{GGGGGG	chr9:136214508-136214819(-)$1	311	32	40	15.9402
CCC}DDDD	chr22:50016189-50016427(-)$1	238	135	143	16.0895
GGGZZZBB	chr12:109124037-109124297(-)$1	260	110	118	16.0895
ffff"""c	chr3:195635821-195636075(-)$1	254	22	30	20.1940
hhhhhhh#	chr11:3013168-3013466(-)$1	298	17	25	15.9402
IIIIIIII	chr19:1472134-1472390(-)$1	256	119	127	16.7611
qqqqqqa]	chr19:1881957-1882207(-)$1	250	102	110	20.1940
A}DDDDDD	chr20:31172308-31172546(-)$1	238	216	224	16.0895
yyccc]a]	chr1:155532314-155532655(-)$1	341	63	71	16.0895
a]gggggg	chr12:132402699-132403009(+)$1	310	64	72	20.1940
EEEa[aoo	chr19:42788120-42788363(+)$1	243	47	55	17.0597
A{JJJJJJ	chr11:504432-504681(-)$1	249	1	9	16.2388
LLDDDD{G	chr16:4387421-4387698(-)$1	277	58	66	20.1940
]a]dddd:	chr11:843611-843894(+)$1	283	195	203	20.1940
[bbmmmmb	chr19:15443001-15443262(-)$1	261	7	15	16.0895
eeeee!!b	chr21:46494479-46494704(+)$1	225	11	19	16.3880
::::::FF	chr19:17355001-17355274(-)$1	273	47	55	20.1940
hhhhhhh2	chr12:109124145-109124520(-)$1	375	36	44	20.1940
ffffffff	chr7:1579959-1580203(+)$1	244	56	64	16.7611
ccceeeee	chr21:45374461-45374725(+)$1	264	33	41	16.0895
DDD{ACCC	chr19:1470961-1471204(-)$1	243	23	31	15.9402
ppffffff	chr20:62331052-62331312(-)$1	260	71	79	16.3880
offffff]	chr19:41771013-41771300(+)$1	287	104	112	20.1940

#DB
(.((....	chr16:447640-447879(+)$1	1	8	16	16.7611
(((((((.	chr7:157130044-157130366(+)$1	1	4	12	20.1940
((.(((((	chr1:245026247-245026533(-)$1	1	119	127	17.0597
))))))))	chr19:1472251-1472519(-)$1	1	248	256	16.7611
.)))..))	chr14:105259023-105259305(-)$1	1	247	255	16.0895
(.((((((	chr5:661991-662260(+)$1	1	26	34	15.9402
((((..((	chr8:67976688-67976975(+)$1	1	62	70	16.0149
..)).)).	chr4:2936000-2936301(-)$1	1	247	255	20.1940
)).)))))	chr16:89787344-89787655(+)$1	1	103	111	17.0597
.((....)	chr1:26232150-26232455(-)$1	1	278	286	16.5373
((((((((	chr4:2935786-2936069(-)$1	1	15	23	20.1940
(((....)	chr20:62331337-62331619(-)$1	1	147	155	16.0895
((.(((((	chr1:245026112-245026435(-)$1	1	21	29	17.0597
).)).)))	chr16:28877056-28877291(+)$1	1	98	106	20.1940
)))(((.(	chr16:53164975-53165274(+)$1	1	177	185	17.0597
..(((((.	chr16:90015682-90015956(+)$1	1	102	110	16.3134
..((.(.(	chr22:20110054-20110315(+)$1	1	146	154	15.7910
(((((.((	chr4:103748166-103748452(-)$1	1	0	8	16.2388
........	chr19:2270192-2270440(+)$1	1	28	36	16.2388
((((((..	chr16:85646736-85646979(+)$1	1	19	27	16.3880
(.(((.((	chr14:105259204-105259430(-)$1	1	16	24	20.1940
...(((.(	chr19:1470155-1470447(-)$1	1	91	99	17.0597
.)))))).	chr11:65343573-65343812(+)$1	1	190	198	17.0597
..))))))	chrX:53710800-53711108(-)$1	1	102	110	15.7910
((((.(((	chr5:154136743-154137015(+)$1	1	212	220	16.0895
))))).))	chr22:50357198-50357498(+)$1	1	151	159	16.5373
))).))))	chr1:228596395-228596661(+)$1	1	257	265	15.7910
)))))(.(	chr7:77167204-77167456(+)$1	1	87	95	16.7611
))))))))	chr7:5460766-5461027(-)$1	1	116	124	16.3134
((((((.(	chr8:71314076-71314346(-)$1	1	25	33	17.0597
((((((((	chr3:187455214-187455489(-)$1	1	119	127	16.3134
(((((.((	chr19:1879451-1879742(-)$1	1	4	12	16.3880
......))	chr6:53213228-53213507(-)$1	1	144	152	16.3880
.((.((((	chr9:139235979-139236206(+)$1	1	93	101	16.0895
((((((((	chr16:1361821-1362079(+)$1	1	45	53	20.1940
(((..(((	chr19:1473961-1474226(-)$1	1	21	29	15.7910
.(((((((	chr5:154136553-154136860(+)$1	1	70	78	15.9402
(.((((((	chr11:126146194-126146433(+)$1	1	33	41	16.2388
((.(((..	chr2:20550309-20550593(-)$1	1	93	101	16.3134
((.((...	chr19:13262680-13262926(+)$1	1	111	119	17.0597
.(((((((	chr19:50167631-50167869(-)$1	1	62	70	16.3134
.)))).((	chr1:202776311-202776604(-)$1	1	34	42	20.1940
(((....)	chr11:611765-612088(+)$1	1	6	14	16.3880
..)))(((	chr9:139249198-139249493(+)$1	1	176	184	20.1940
(.((((((	chr9:136214508-136214819(-)$1	1	32	40	15.9402
))).))))	chr22:50016189-50016427(-)$1	1	135	143	16.0895
)))...))	chr12:109124037-109124297(-)$1	1	110	118	16.0895
((((...(	chr3:195635821-195636075(-)$1	1	22	30	20.1940
(((((((.	chr11:3013168-3013466(-)$1	1	17	25	15.9402
))))))))	chr19:1472134-1472390(-)$1	1	119	127	16.7611
......).	chr19:1881957-1882207(-)$1	1	102	110	20.1940
).))))))	chr20:31172308-31172546(-)$1	1	216	224	16.0895
..))).).	chr1:155532314-155532655(-)$1	1	63	71	16.0895
).))))))	chr12:132402699-132403009(+)$1	1	64	72	20.1940
((((.(..	chr19:42788120-42788363(+)$1	1	47	55	17.0597
(.((((((	chr11:504432-504681(-)$1	1	1	9	16.2388
..((((.(	chr16:4387421-4387698(-)$1	1	58	66	20.1940
.).)))).	chr11:843611-843894(+)$1	1	195	203	20.1940
.((....)	chr19:15443001-15443262(-)$1	1	7	15	16.0895
(((((..(	chr21:46494479-46494704(+)$1	1	11	19	16.3880
......((	chr19:17355001-17355274(-)$1	1	47	55	20.1940
))))))).	chr12:109124145-109124520(-)$1	1	36	44	20.1940
))))))))	chr7:1579959-1580203(+)$1	1	56	64	16.7611
)))(((((	chr21:45374461-45374725(+)$1	1	33	41	16.0895
(((.((((	chr19:1470961-1471204(-)$1	1	23	31	15.9402
..))))))	chr20:62331052-62331312(-)$1	1	71	79	16.3880
.)))))).	chr19:41771013-41771300(+)$1	1	104	112	20.1940

#PSSM
G : 0.74	g : 0.17	C : 0.05	c : 0.01	
G : 0.80	g : 0.19	
C : 0.68	c : 0.16	G : 0.05	U : 0.05	A : 0.01	g : 0.01	
U : 0.64	u : 0.11	C : 0.07	G : 0.07	g : 0.05	A : 0.02	
G : 0.71	g : 0.19	U : 0.07	u : 0.01	
G : 0.67	g : 0.17	A : 0.07	U : 0.02	C : 0.01	c : 0.01	a : 0.01	
G : 0.77	g : 0.22	
G : 0.71	g : 0.22	C : 0.05	

#score	1158.1492537313432
#seq	67
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_CDS_m1_run2.nuc.txt

#NT
UGA	chr15:65883768-65884043(-)$1	275	7	10	9.0000
UGA	chr7:102952446-102952715(+)$1	269	29	32	9.0000
UGA	chr1:161641330-161641679(+)$1	349	35	38	9.0000
UGA	chr3:16343270-16343514(+)$1	244	44	47	9.0000
UGA	chr15:75659722-75659980(-)$1	258	34	37	9.0000
UGA	chr9:131289694-131289945(+)$1	251	86	89	9.0000
UGA	chr11:118971729-118971998(-)$1	269	55	58	9.0000
UGA	chr22:19968569-19968840(-)$1	271	20	23	9.0000
UGA	chr15:68497315-68497574(-)$1	259	35	38	9.0000
UGA	chr12:123344502-123344814(+)$1	312	6	9	9.0000
UGA	chr2:64335236-64335527(-)$1	291	44	47	9.0000
UGA	chr11:57176492-57176753(-)$1	261	20	23	9.0000
UGA	chr18:2747539-2747781(+)$1	242	36	39	9.0000
UGA	chr1:46659090-46659344(-)$1	254	4	7	9.0000
UGA	chr19:33132787-33133031(-)$1	244	18	21	9.0000
UGA	chr20:39796458-39796687(+)$1	229	38	41	9.0000
UGA	chr11:129754500-129754766(-)$1	266	20	23	9.0000
UGA	chr11:118899781-118900046(-)$1	265	1	4	9.0000
UGA	chrX:153197355-153197684(-)$1	329	196	199	9.0000
UGA	chr11:10825545-10825798(-)$1	253	4	7	9.0000
UGA	chr7:23571253-23571516(-)$1	263	74	77	9.0000
UGA	chr1:94337489-94337740(-)$1	251	3	6	9.0000
UGA	chr15:43021977-43022222(-)$1	245	45	48	9.0000
UGA	chr21:45540082-45540336(+)$1	254	210	213	9.0000
UGA	chr2:200776382-200776679(+)$1	297	171	174	9.0000
UGA	chr5:162896727-162896973(+)$1	246	71	74	9.0000
UGA	chr1:249148145-249148382(-)$1	237	220	223	9.0000
UGA	chr12:49237532-49237842(-)$1	310	125	128	9.0000
UGA	chr7:99755627-99755887(-)$1	260	177	180	9.0000
UGA	chr11:2990887-2991139(-)$1	252	25	28	9.0000
UGA	chr2:190444482-190444741(-)$1	259	52	55	9.0000
UGA	chr17:2595275-2595531(-)$1	256	7	10	9.0000
UGA	chr22:45719198-45719457(+)$1	259	51	54	9.0000
UGA	chr6:160517551-160517805(+)$1	254	7	10	9.0000
UGA	chr3:38047154-38047387(+)$1	233	157	160	9.0000
UGA	chr1:42654838-42655086(-)$1	248	21	24	9.0000
UGA	chr10:7318694-7319042(-)$1	348	72	75	9.0000
UGA	chr16:89760921-89761153(+)$1	232	29	32	9.0000
UGA	chr3:65367400-65367658(-)$1	258	187	190	9.0000
UGA	chr1:31465385-31465617(-)$1	232	10	13	9.0000
UGA	chr1:54284492-54284749(-)$1	257	124	127	9.0000
UGA	chr1:36603239-36603541(-)$1	302	21	24	9.0000
UGA	chr1:118492637-118492908(+)$1	271	16	19	9.0000
UGA	chr9:37489287-37489540(+)$1	253	41	44	9.0000
UGA	chr20:24949382-24949655(-)$1	273	94	97	9.0000
UGA	chr14:102473323-102473561(+)$1	238	100	103	9.0000
UGA	chr16:66759587-66759832(-)$1	245	33	36	9.0000
UGA	chr6:17831111-17831442(-)$1	331	41	44	9.0000
UGA	chr21:44293516-44293830(-)$1	314	113	116	9.0000
UGA	chr16:24826554-24826846(+)$1	292	100	103	9.0000
UGA	chr12:121890753-121891030(-)$1	277	46	49	9.0000
UGA	chr12:121682784-121683043(-)$1	259	7	10	9.0000
UGA	chr17:57141532-57141828(-)$1	296	62	65	9.0000
UGA	chr3:146239162-146239447(-)$1	285	41	44	9.0000
UGA	chr5:72348205-72348469(+)$1	264	2	5	9.0000
UGA	chr2:32706391-32706674(+)$1	283	36	39	9.0000
UGA	chr15:42128210-42128454(+)$1	244	67	70	9.0000
UGA	chr11:60900543-60900837(-)$1	294	88	91	9.0000
UGA	chr12:121880704-121880973(-)$1	269	134	137	9.0000
UGA	chr16:2027352-2027635(+)$1	283	9	12	9.0000
UGA	chr18:33739672-33739970(+)$1	298	4	7	9.0000
UGA	chr15:65862419-65862689(+)$1	270	110	113	9.0000
UGA	chr17:72768062-72768384(-)$1	322	39	42	9.0000
UGA	chr22:39712598-39712813(-)$1	215	18	21	9.0000
UGA	chr4:88015978-88016257(+)$1	279	67	70	9.0000
UGA	chr20:60701367-60701729(+)$1	362	129	132	9.0000
UGA	chr2:45773721-45773983(-)$1	262	0	3	9.0000
UGA	chr2:44023770-44024158(+)$1	388	25	28	9.0000
UGA	chrX:153206974-153207226(-)$1	252	195	198	9.0000
UGA	chr17:37673674-37673971(+)$1	297	54	57	9.0000
UGA	chr3:9776315-9776561(+)$1	246	75	78	9.0000
UGA	chr8:90914926-90915206(+)$1	280	140	143	9.0000
UGA	chr7:45140845-45141067(-)$1	222	200	203	9.0000
UGA	chr3:48222051-48222313(-)$1	262	134	137	9.0000
UGA	chr15:91548768-91549029(-)$1	261	43	46	9.0000
UGA	chrX:123224586-123224836(+)$1	250	19	22	9.0000
UGA	chr20:30137019-30137290(+)$1	271	117	120	9.0000
UGA	chr5:94987924-94988184(+)$1	260	9	12	9.0000
UGA	chr4:130003264-130003572(-)$1	308	12	15	9.0000
UGA	chr6:110536420-110536722(+)$1	302	13	16	9.0000
UGA	chr7:106512941-106513215(+)$1	274	44	47	9.0000
UGA	chr12:120106098-120106379(+)$1	281	60	63	9.0000
UGA	chr13:42703652-42703914(+)$1	262	39	42	9.0000
UGA	chr7:107542731-107543008(+)$1	277	49	52	9.0000
UGA	chr7:6066026-6066276(-)$1	250	29	32	9.0000
UGA	chr3:10076807-10077052(+)$1	245	97	100	9.0000
UGA	chr19:34904636-34904897(+)$1	261	14	17	9.0000
UGA	chr3:47033327-47033618(+)$1	291	14	17	9.0000
UGA	chr16:23490063-23490311(-)$1	248	86	89	9.0000
UGA	chr17:40148947-40149234(-)$1	287	25	28	9.0000
uga	chr20:49191085-49191336(+)$1	251	11	14	9.0000
UGA	chr19:39439044-39439334(-)$1	290	115	118	9.0000
UGA	chr10:79565250-79565547(-)$1	297	102	105	9.0000
UGA	chr11:46804673-46804928(-)$1	255	62	65	9.0000
UGA	chr22:26083505-26083819(+)$1	314	41	44	9.0000
UGA	chr9:139996017-139996271(+)$1	254	45	48	9.0000
UGA	chr2:9004122-9004415(-)$1	293	18	21	9.0000
UGA	chr16:85696855-85697078(+)$1	223	122	125	9.0000
UGA	chr1:155701092-155701349(+)$1	257	19	22	9.0000

#otherMatches

#Struct PSSM
ccl	chr16:24560230-24560508(+)$1	278	44	47	9.0000
FGG	chr15:65883768-65884043(-)$1	275	7	10	9.0000
f""	chr7:102952446-102952715(+)$1	269	29	32	9.0000
:::	chr1:161641330-161641679(+)$1	349	35	38	9.0000
"ee	chr3:16343270-16343514(+)$1	244	44	47	9.0000
:::	chr15:75659722-75659980(-)$1	258	34	37	9.0000
c]d	chr9:131289694-131289945(+)$1	251	86	89	9.0000
GGF	chr11:118971729-118971998(-)$1	269	55	58	9.0000
f!!	chr22:19968569-19968840(-)$1	271	20	23	9.0000
:dd	chr15:68497315-68497574(-)$1	259	35	38	9.0000
DD:	chr12:123344502-123344814(+)$1	312	6	9	9.0000
EEE	chr2:64335236-64335527(-)$1	291	44	47	9.0000
CMM	chr11:57176492-57176753(-)$1	261	20	23	9.0000
d[c	chr18:2747539-2747781(+)$1	242	36	39	9.0000
:::	chr1:46659090-46659344(-)$1	254	4	7	9.0000
CQQ	chr19:33132787-33133031(-)$1	244	18	21	9.0000
dpp	chr20:39796458-39796687(+)$1	229	38	41	9.0000
mff	chr11:129754500-129754766(-)$1	266	20	23	9.0000
:BB	chr11:118899781-118900046(-)$1	265	1	4	9.0000
ggg	chrX:153197355-153197684(-)$1	329	196	199	9.0000
{FF	chr11:10825545-10825798(-)$1	253	4	7	9.0000
dnn	chr7:23571253-23571516(-)$1	263	74	77	9.0000
:::	chr1:94337489-94337740(-)$1	251	3	6	9.0000
fff	chr15:43021977-43022222(-)$1	245	45	48	9.0000
ff]	chr21:45540082-45540336(+)$1	254	210	213	9.0000
:::	chr2:200776382-200776679(+)$1	297	171	174	9.0000
cc2	chr5:162896727-162896973(+)$1	246	71	74	9.0000
CCY	chr1:249148145-249148382(-)$1	237	220	223	9.0000
[hh	chr12:49237532-49237842(-)$1	310	125	128	9.0000
eee	chr7:99755627-99755887(-)$1	260	177	180	9.0000
ggg	chr11:2990887-2991139(-)$1	252	25	28	9.0000
ddd	chr2:190444482-190444741(-)$1	259	52	55	9.0000
e""	chr17:2595275-2595531(-)$1	256	7	10	9.0000
:::	chr22:45719198-45719457(+)$1	259	51	54	9.0000
D{A	chr6:160517551-160517805(+)$1	254	7	10	9.0000
e]a	chr3:38047154-38047387(+)$1	233	157	160	9.0000
bnn	chr1:42654838-42655086(-)$1	248	21	24	9.0000
eee	chr10:7318694-7319042(-)$1	348	72	75	9.0000
ee!	chr16:89760921-89761153(+)$1	232	29	32	9.0000
eee	chr3:65367400-65367658(-)$1	258	187	190	9.0000
::c	chr1:31465385-31465617(-)$1	232	10	13	9.0000
III	chr1:54284492-54284749(-)$1	257	124	127	9.0000
RRR	chr1:36603239-36603541(-)$1	302	21	24	9.0000
$ff	chr1:118492637-118492908(+)$1	271	16	19	9.0000
MEE	chr9:37489287-37489540(+)$1	253	41	44	9.0000
ddD	chr20:24949382-24949655(-)$1	273	94	97	9.0000
]ff	chr14:102473323-102473561(+)$1	238	100	103	9.0000
E{D	chr16:66759587-66759832(-)$1	245	33	36	9.0000
ddd	chr6:17831111-17831442(-)$1	331	41	44	9.0000
"""	chr21:44293516-44293830(-)$1	314	113	116	9.0000
mdd	chr16:24826554-24826846(+)$1	292	100	103	9.0000
bb]	chr12:121890753-121891030(-)$1	277	46	49	9.0000
dmm	chr12:121682784-121683043(-)$1	259	7	10	9.0000
{CC	chr17:57141532-57141828(-)$1	296	62	65	9.0000
JJJ	chr3:146239162-146239447(-)$1	285	41	44	9.0000
HHH	chr5:72348205-72348469(+)$1	264	2	5	9.0000
HHH	chr2:32706391-32706674(+)$1	283	36	39	9.0000
ee!	chr15:42128210-42128454(+)$1	244	67	70	9.0000
]dd	chr11:60900543-60900837(-)$1	294	88	91	9.0000
CC{	chr12:121880704-121880973(-)$1	269	134	137	9.0000
:EE	chr16:2027352-2027635(+)$1	283	9	12	9.0000
:::	chr18:33739672-33739970(+)$1	298	4	7	9.0000
eee	chr15:65862419-65862689(+)$1	270	110	113	9.0000
fff	chr17:72768062-72768384(-)$1	322	39	42	9.0000
::C	chr22:39712598-39712813(-)$1	215	18	21	9.0000
d]e	chr4:88015978-88016257(+)$1	279	67	70	9.0000
a[f	chr20:60701367-60701729(+)$1	362	129	132	9.0000
:::	chr2:45773721-45773983(-)$1	262	0	3	9.0000
fff	chr2:44023770-44024158(+)$1	388	25	28	9.0000
sss	chrX:153206974-153207226(-)$1	252	195	198	9.0000
KGG	chr17:37673674-37673971(+)$1	297	54	57	9.0000
dd:	chr3:9776315-9776561(+)$1	246	75	78	9.0000
eee	chr8:90914926-90915206(+)$1	280	140	143	9.0000
}FF	chr7:45140845-45141067(-)$1	222	200	203	9.0000
ee:	chr3:48222051-48222313(-)$1	262	134	137	9.0000
HHH	chr15:91548768-91549029(-)$1	261	43	46	9.0000
GG:	chrX:123224586-123224836(+)$1	250	19	22	9.0000
eee	chr20:30137019-30137290(+)$1	271	117	120	9.0000
mbb	chr5:94987924-94988184(+)$1	260	9	12	9.0000
dd:	chr4:130003264-130003572(-)$1	308	12	15	9.0000
:::	chr6:110536420-110536722(+)$1	302	13	16	9.0000
FLL	chr7:106512941-106513215(+)$1	274	44	47	9.0000
dd:	chr12:120106098-120106379(+)$1	281	60	63	9.0000
3ff	chr13:42703652-42703914(+)$1	262	39	42	9.0000
2gg	chr7:107542731-107543008(+)$1	277	49	52	9.0000
e""	chr7:6066026-6066276(-)$1	250	29	32	9.0000
DDD	chr3:10076807-10077052(+)$1	245	97	100	9.0000
ddd	chr19:34904636-34904897(+)$1	261	14	17	9.0000
CCC	chr3:47033327-47033618(+)$1	291	14	17	9.0000
mmm	chr16:23490063-23490311(-)$1	248	86	89	9.0000
fff	chr17:40148947-40149234(-)$1	287	25	28	9.0000
:dd	chr20:49191085-49191336(+)$1	251	11	14	9.0000
ddd	chr19:39439044-39439334(-)$1	290	115	118	9.0000
ddr	chr10:79565250-79565547(-)$1	297	102	105	9.0000
eee	chr11:46804673-46804928(-)$1	255	62	65	9.0000
b[d	chr22:26083505-26083819(+)$1	314	41	44	9.0000
FF:	chr9:139996017-139996271(+)$1	254	45	48	9.0000
DDD	chr2:9004122-9004415(-)$1	293	18	21	9.0000
!!d	chr16:85696855-85697078(+)$1	223	122	125	9.0000
III	chr1:155701092-155701349(+)$1	257	19	22	9.0000

#DB
((.	chr16:24560230-24560508(+)$1	1	44	47	9.0000
(((	chr15:65883768-65884043(-)$1	1	7	10	9.0000
(..	chr7:102952446-102952715(+)$1	1	29	32	9.0000
...	chr1:161641330-161641679(+)$1	1	35	38	9.0000
.((	chr3:16343270-16343514(+)$1	1	44	47	9.0000
...	chr15:75659722-75659980(-)$1	1	34	37	9.0000
).)	chr9:131289694-131289945(+)$1	1	86	89	9.0000
(((	chr11:118971729-118971998(-)$1	1	55	58	9.0000
(..	chr22:19968569-19968840(-)$1	1	20	23	9.0000
.((	chr15:68497315-68497574(-)$1	1	35	38	9.0000
((.	chr12:123344502-123344814(+)$1	1	6	9	9.0000
(((	chr2:64335236-64335527(-)$1	1	44	47	9.0000
(..	chr11:57176492-57176753(-)$1	1	20	23	9.0000
(.(	chr18:2747539-2747781(+)$1	1	36	39	9.0000
...	chr1:46659090-46659344(-)$1	1	4	7	9.0000
(..	chr19:33132787-33133031(-)$1	1	18	21	9.0000
(..	chr20:39796458-39796687(+)$1	1	38	41	9.0000
.))	chr11:129754500-129754766(-)$1	1	20	23	9.0000
.((	chr11:118899781-118900046(-)$1	1	1	4	9.0000
)))	chrX:153197355-153197684(-)$1	1	196	199	9.0000
.((	chr11:10825545-10825798(-)$1	1	4	7	9.0000
(..	chr7:23571253-23571516(-)$1	1	74	77	9.0000
...	chr1:94337489-94337740(-)$1	1	3	6	9.0000
)))	chr15:43021977-43022222(-)$1	1	45	48	9.0000
)).	chr21:45540082-45540336(+)$1	1	210	213	9.0000
...	chr2:200776382-200776679(+)$1	1	171	174	9.0000
)).	chr5:162896727-162896973(+)$1	1	71	74	9.0000
)).	chr1:249148145-249148382(-)$1	1	220	223	9.0000
.((	chr12:49237532-49237842(-)$1	1	125	128	9.0000
)))	chr7:99755627-99755887(-)$1	1	177	180	9.0000
(((	chr11:2990887-2991139(-)$1	1	25	28	9.0000
(((	chr2:190444482-190444741(-)$1	1	52	55	9.0000
(..	chr17:2595275-2595531(-)$1	1	7	10	9.0000
...	chr22:45719198-45719457(+)$1	1	51	54	9.0000
(.(	chr6:160517551-160517805(+)$1	1	7	10	9.0000
).)	chr3:38047154-38047387(+)$1	1	157	160	9.0000
(..	chr1:42654838-42655086(-)$1	1	21	24	9.0000
)((	chr10:7318694-7319042(-)$1	1	72	75	9.0000
((.	chr16:89760921-89761153(+)$1	1	29	32	9.0000
(((	chr3:65367400-65367658(-)$1	1	187	190	9.0000
..(	chr1:31465385-31465617(-)$1	1	10	13	9.0000
(((	chr1:54284492-54284749(-)$1	1	124	127	9.0000
...	chr1:36603239-36603541(-)$1	1	21	24	9.0000
.((	chr1:118492637-118492908(+)$1	1	16	19	9.0000
.((	chr9:37489287-37489540(+)$1	1	41	44	9.0000
))(	chr20:24949382-24949655(-)$1	1	94	97	9.0000
.))	chr14:102473323-102473561(+)$1	1	100	103	9.0000
(.(	chr16:66759587-66759832(-)$1	1	33	36	9.0000
(((	chr6:17831111-17831442(-)$1	1	41	44	9.0000
...	chr21:44293516-44293830(-)$1	1	113	116	9.0000
.))	chr16:24826554-24826846(+)$1	1	100	103	9.0000
)).	chr12:121890753-121891030(-)$1	1	46	49	9.0000
(..	chr12:121682784-121683043(-)$1	1	7	10	9.0000
.((	chr17:57141532-57141828(-)$1	1	62	65	9.0000
(((	chr3:146239162-146239447(-)$1	1	41	44	9.0000
(((	chr5:72348205-72348469(+)$1	1	2	5	9.0000
(((	chr2:32706391-32706674(+)$1	1	36	39	9.0000
((.	chr15:42128210-42128454(+)$1	1	67	70	9.0000
.))	chr11:60900543-60900837(-)$1	1	88	91	9.0000
((.	chr12:121880704-121880973(-)$1	1	134	137	9.0000
.((	chr16:2027352-2027635(+)$1	1	9	12	9.0000
...	chr18:33739672-33739970(+)$1	1	4	7	9.0000
(((	chr15:65862419-65862689(+)$1	1	110	113	9.0000
)))	chr17:72768062-72768384(-)$1	1	39	42	9.0000
..(	chr22:39712598-39712813(-)$1	1	18	21	9.0000
).)	chr4:88015978-88016257(+)$1	1	67	70	9.0000
(.(	chr20:60701367-60701729(+)$1	1	129	132	9.0000
...	chr2:45773721-45773983(-)$1	1	0	3	9.0000
)))	chr2:44023770-44024158(+)$1	1	25	28	9.0000
...	chrX:153206974-153207226(-)$1	1	195	198	9.0000
.((	chr17:37673674-37673971(+)$1	1	54	57	9.0000
)).	chr3:9776315-9776561(+)$1	1	75	78	9.0000
(((	chr8:90914926-90915206(+)$1	1	140	143	9.0000
.))	chr7:45140845-45141067(-)$1	1	200	203	9.0000
)).	chr3:48222051-48222313(-)$1	1	134	137	9.0000
(((	chr15:91548768-91549029(-)$1	1	43	46	9.0000
((.	chrX:123224586-123224836(+)$1	1	19	22	9.0000
)))	chr20:30137019-30137290(+)$1	1	117	120	9.0000
.))	chr5:94987924-94988184(+)$1	1	9	12	9.0000
)).	chr4:130003264-130003572(-)$1	1	12	15	9.0000
...	chr6:110536420-110536722(+)$1	1	13	16	9.0000
(..	chr7:106512941-106513215(+)$1	1	44	47	9.0000
)).	chr12:120106098-120106379(+)$1	1	60	63	9.0000
.))	chr13:42703652-42703914(+)$1	1	39	42	9.0000
.))	chr7:107542731-107543008(+)$1	1	49	52	9.0000
(..	chr7:6066026-6066276(-)$1	1	29	32	9.0000
(((	chr3:10076807-10077052(+)$1	1	97	100	9.0000
(((	chr19:34904636-34904897(+)$1	1	14	17	9.0000
(((	chr3:47033327-47033618(+)$1	1	14	17	9.0000
...	chr16:23490063-23490311(-)$1	1	86	89	9.0000
)))	chr17:40148947-40149234(-)$1	1	25	28	9.0000
.((	chr20:49191085-49191336(+)$1	1	11	14	9.0000
)))	chr19:39439044-39439334(-)$1	1	115	118	9.0000
((.	chr10:79565250-79565547(-)$1	1	102	105	9.0000
)))	chr11:46804673-46804928(-)$1	1	62	65	9.0000
(.(	chr22:26083505-26083819(+)$1	1	41	44	9.0000
((.	chr9:139996017-139996271(+)$1	1	45	48	9.0000
(((	chr2:9004122-9004415(-)$1	1	18	21	9.0000
..(	chr16:85696855-85697078(+)$1	1	122	125	9.0000
(((	chr1:155701092-155701349(+)$1	1	19	22	9.0000

#PSSM
U : 0.99	u : 0.01	
G : 0.99	g : 0.01	
A : 0.99	a : 0.01	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_CDS_m2_run1.nuc.txt

#NT
CCCUCCAGC	chr8:21996786-21997030(-)$1	244	119	128	18.8103
CCCUCCUCC	chr7:87505992-87506225(+)$1	233	110	119	12.9482
CCUUCCAGG	chr7:105173210-105173466(+)$1	256	154	163	10.9655
CCCUGCAAC	chr12:109954577-109954847(+)$1	270	153	162	12.3448
CCUUCCACC	chr6:170893277-170893487(-)$1	210	38	47	11.6551
CUCUCCAUC	chr2:97529270-97529520(-)$1	250	154	163	11.3965
CCCUGCAGC	chr19:45480615-45480878(+)$1	263	113	122	15.9655
CACUCCAAC	chr9:117110061-117110321(-)$1	260	127	136	11.2241
CCCGCCCGC	chr17:79658360-79658600(+)$1	240	95	104	12.0000
CCCUCCGCC	chr7:73008482-73008704(-)$1	222	38	47	12.4310
GCCUUCAGC	chr1:155920168-155920405(-)$1	237	54	63	11.4827
CUCUCCAGA	chr9:123629132-123629360(-)$1	228	109	118	11.1379
CCCUGCAGU	chr5:140048503-140048803(+)$1	300	152	161	11.9137
CCCUCUAGA	chr16:2215730-2215988(+)$1	258	141	150	10.3620
CCCACCCGC	chr8:22464110-22464353(+)$1	243	171	180	12.2586
CCCCCCAGC	chr16:89654924-89655224(+)$1	300	25	34	15.1034
GCCUACAGC	chr11:72409030-72409281(-)$1	251	212	221	11.5689
CCCCACAGC	chr1:154562284-154562525(-)$1	241	113	122	11.6551
CCCUCCUGC	chr19:580478-580752(+)$1	274	96	105	16.2241
CCCUCCUCC	chr20:44589387-44589666(-)$1	279	247	256	12.9482
ACCUUCAGC	chr16:2157766-2157985(-)$1	219	45	54	11.1379
CCCACCACC	chr22:19963150-19963392(-)$1	242	91	100	12.0862
CCUACCAGC	chr1:27088709-27088951(+)$1	242	41	50	11.4827
CCCUCCCCC	chr1:153904760-153905034(-)$1	274	95	104	12.4310
GCCUGCAGC	chr1:36929680-36929920(-)$1	240	159	168	12.1724
CCUUCCAGC	chr15:74710189-74710418(-)$1	229	61	70	14.9310
UCUUCCAGC	chr19:10273894-10274182(-)$1	288	19	28	10.9655
CCCUCCCCC	chr12:53574252-53574471(-)$1	219	4	13	12.4310
CCCUCCGUC	chr12:133393072-133393349(-)$1	277	48	57	12.0862
CUCUCCAGC	chr9:4740802-4741037(-)$1	235	55	64	15.0172
CCCUCCAGG	chr7:72396201-72396448(+)$1	247	79	88	14.8448
CUCUCCUGC	chr1:32646692-32646977(+)$1	285	136	145	12.4310
CCCUCCAGA	chr16:18850799-18851120(-)$1	321	199	208	14.9310
CCCUCCUAC	chr1:29485725-29485987(-)$1	262	29	38	12.6034
CCCUACAGC	chr19:14523182-14523461(-)$1	279	67	76	15.3620
CCCACCAGC	chr2:27246243-27246510(+)$1	267	161	170	15.3620
CCCCCCAGC	chr5:175957894-175958132(-)$1	238	216	225	15.1034
CCUUCCAGA	chr3:47050364-47050592(+)$1	228	106	115	11.0517
GCCUGCAGC	chr19:54682370-54682582(-)$1	212	166	175	12.1724
CCAUCCAGG	chr22:38046154-38046414(+)$1	260	39	48	10.5344
CCCUCCAGC	chr11:70265903-70266110(+)$1	207	79	88	18.8103
CCCUCCAGC	chr16:4412501-4412713(-)$1	212	19	28	18.8103
CGCUCCUGC	chr7:150649826-150650046(-)$1	220	43	52	12.0862
CCCUCCAGC	chr17:43011152-43011391(-)$1	239	26	35	18.8103
CUCUGCAGC	chr12:133383743-133383999(-)$1	256	140	149	12.1724
CCCUCAAGC	chr2:102483667-102483918(+)$1	251	90	99	14.1551
CCCUCCUUC	chr19:46357321-46357533(-)$1	212	23	32	12.6034
GCCUGCAGC	chr10:72513438-72513690(+)$1	252	31	40	12.1724
UCCACCAGC	chr17:42931485-42931737(-)$1	252	106	115	11.3965
CACGCCAGC	chr11:64674583-64674828(-)$1	245	233	242	11.1379
CCCGGCAGC	chr21:45539148-45539407(+)$1	259	16	25	12.2586
CACUCCUGC	chr1:228285052-228285300(+)$1	248	129	138	12.2586
CCCACCAGC	chr19:50322304-50322563(+)$1	259	202	211	15.3620
CCCUGCUGC	chr1:54707768-54708009(-)$1	241	53	62	13.3793
UCCUCCGGC	chr14:69259443-69259700(-)$1	257	224	233	11.7413
CCCUCUGGC	chr1:151341883-151342186(-)$1	303	79	88	11.1379
cccugcagu	chr7:5544880-5545143(-)$1	263	167	176	11.9137

#otherMatches

#Struct PSSM
ee[ccc[dd	chr22:50905603-50905867(-)$1	264	140	149	16.2241
gggggg[a!	chr8:21996786-21997030(-)$1	244	119	128	18.8103
aqqqqqqqq	chr7:87505992-87506225(+)$1	233	110	119	12.9482
xxxxxxxdd	chr7:105173210-105173466(+)$1	256	154	163	10.9655
#bbqqqqqq	chr12:109954577-109954847(+)$1	270	153	162	12.3448
FFFF::::c	chr6:170893277-170893487(-)$1	210	38	47	11.6551
44dddd]bb	chr2:97529270-97529520(-)$1	250	154	163	11.3965
e333ccc:b	chr19:45480615-45480878(+)$1	263	113	122	15.9655
xxxxxccc3	chr9:117110061-117110321(-)$1	260	127	136	11.2241
ffff]gggg	chr17:79658360-79658600(+)$1	240	95	104	12.0000
ee]ccceee	chr7:73008482-73008704(-)$1	222	38	47	12.4310
bbnnnnnbb	chr1:155920168-155920405(-)$1	237	54	63	11.4827
KIIIIIIII	chr9:123629132-123629360(-)$1	228	109	118	11.1379
ggggooooo	chr5:140048503-140048803(+)$1	300	152	161	11.9137
CAA}BB}EE	chr16:2215730-2215988(+)$1	258	141	150	10.3620
adddd22ii	chr8:22464110-22464353(+)$1	243	171	180	12.2586
^^^^^^^bb	chr16:89654924-89655224(+)$1	300	25	34	15.1034
:::::::bb	chr11:72409030-72409281(-)$1	251	212	221	11.5689
hh:::::cc	chr1:154562284-154562525(-)$1	241	113	122	11.6551
ffffff]ee	chr19:580478-580752(+)$1	274	96	105	16.2241
fffdddd]g	chr20:44589387-44589666(-)$1	279	247	256	12.9482
ee!!cccll	chr16:2157766-2157985(-)$1	219	45	54	11.1379
cc%%%%%%f	chr22:19963150-19963392(-)$1	242	91	100	12.0862
:::::::bb	chr1:27088709-27088951(+)$1	242	41	50	11.4827
IIIII:ddd	chr1:153904760-153905034(-)$1	274	95	104	12.4310
JJJJJJ}CC	chr1:36929680-36929920(-)$1	240	159	168	12.1724
ee"""dddd	chr15:74710189-74710418(-)$1	229	61	70	14.9310
IIIIIIIIO	chr19:10273894-10274182(-)$1	288	19	28	10.9655
EEEEEEEEE	chr12:53574252-53574471(-)$1	219	4	13	12.4310
]eeeeeddd	chr12:133393072-133393349(-)$1	277	48	57	12.0862
ddd[bb[ff	chr9:4740802-4741037(-)$1	235	55	64	15.0172
55555cccd	chr7:72396201-72396448(+)$1	247	79	88	14.8448
ttttttttt	chr1:32646692-32646977(+)$1	285	136	145	12.4310
EEEEEffff	chr16:18850799-18851120(-)$1	321	199	208	14.9310
DDD{CCCdd	chr1:29485725-29485987(-)$1	262	29	38	12.6034
=====dddd	chr19:14523182-14523461(-)$1	279	67	76	15.3620
eee!!ffff	chr2:27246243-27246510(+)$1	267	161	170	15.3620
EEZZZDDDD	chr5:175957894-175958132(-)$1	238	216	225	15.1034
DDYYBBZZZ	chr3:47050364-47050592(+)$1	228	106	115	11.0517
d]ffffff]	chr19:54682370-54682582(-)$1	212	166	175	12.1724
EEEE{GGGG	chr22:38046154-38046414(+)$1	260	39	48	10.5344
33ccc]ggg	chr11:70265903-70266110(+)$1	207	79	88	18.8103
boooooobb	chr16:4412501-4412713(-)$1	212	19	28	18.8103
mbbbbeeee	chr7:150649826-150650046(-)$1	220	43	52	12.0862
aooooooa]	chr17:43011152-43011391(-)$1	239	26	35	18.8103
diiiiiiii	chr12:133383743-133383999(-)$1	256	140	149	12.1724
:::eeeee[	chr2:102483667-102483918(+)$1	251	90	99	14.1551
DIIIIIIII	chr19:46357321-46357533(-)$1	212	23	32	12.6034
BB{EEEEEA	chr10:72513438-72513690(+)$1	252	31	40	12.1724
GGGGGG::E	chr17:42931485-42931737(-)$1	252	106	115	11.3965
qqqbb::EE	chr11:64674583-64674828(-)$1	245	233	242	11.1379
biiiiiiii	chr21:45539148-45539407(+)$1	259	16	25	12.2586
BBKKFFFFF	chr1:228285052-228285300(+)$1	248	129	138	12.2586
ooooooccc	chr19:50322304-50322563(+)$1	259	202	211	15.3620
GGGGGG{DD	chr1:54707768-54708009(-)$1	241	53	62	13.3793
ddbb]bb]e	chr14:69259443-69259700(-)$1	257	224	233	11.7413
hhhhheeee	chr1:151341883-151342186(-)$1	303	79	88	11.1379
YYDDDD::d	chr7:5544880-5545143(-)$1	263	167	176	11.9137

#DB
((.(((.((	chr22:50905603-50905867(-)$1	1	140	149	16.2241
((((((.(.	chr8:21996786-21997030(-)$1	1	119	128	18.8103
(........	chr7:87505992-87506225(+)$1	1	110	119	12.9482
.......))	chr7:105173210-105173466(+)$1	1	154	163	10.9655
.((......	chr12:109954577-109954847(+)$1	1	153	162	12.3448
((((....(	chr6:170893277-170893487(-)$1	1	38	47	11.6551
..)))).))	chr2:97529270-97529520(-)$1	1	154	163	11.3965
)...))).(	chr19:45480615-45480878(+)$1	1	113	122	15.9655
.....))).	chr9:117110061-117110321(-)$1	1	127	136	11.2241
)))).))))	chr17:79658360-79658600(+)$1	1	95	104	12.0000
)).)))(((	chr7:73008482-73008704(-)$1	1	38	47	12.4310
((.....))	chr1:155920168-155920405(-)$1	1	54	63	11.4827
.((((((((	chr9:123629132-123629360(-)$1	1	109	118	11.1379
((((.....	chr5:140048503-140048803(+)$1	1	152	161	11.9137
))).)).))	chr16:2215730-2215988(+)$1	1	141	150	10.3620
)))))..))	chr8:22464110-22464353(+)$1	1	171	180	12.2586
.......))	chr16:89654924-89655224(+)$1	1	25	34	15.1034
.......((	chr11:72409030-72409281(-)$1	1	212	221	11.5689
)).....((	chr1:154562284-154562525(-)$1	1	113	122	11.6551
)))))).))	chr19:580478-580752(+)$1	1	96	105	16.2241
))))))).)	chr20:44589387-44589666(-)$1	1	247	256	12.9482
((..(((..	chr16:2157766-2157985(-)$1	1	45	54	11.1379
((......(	chr22:19963150-19963392(-)$1	1	91	100	12.0862
.......((	chr1:27088709-27088951(+)$1	1	41	50	11.4827
(((((.(((	chr1:153904760-153905034(-)$1	1	95	104	12.4310
)))))).))	chr1:36929680-36929920(-)$1	1	159	168	12.1724
((...((((	chr15:74710189-74710418(-)$1	1	61	70	14.9310
((((((((.	chr19:10273894-10274182(-)$1	1	19	28	10.9655
(((((((((	chr12:53574252-53574471(-)$1	1	4	13	12.4310
.)))))(((	chr12:133393072-133393349(-)$1	1	48	57	12.0862
(((.((.((	chr9:4740802-4741037(-)$1	1	55	64	15.0172
.....))))	chr7:72396201-72396448(+)$1	1	79	88	14.8448
.........	chr1:32646692-32646977(+)$1	1	136	145	12.4310
(((((((((	chr16:18850799-18851120(-)$1	1	199	208	14.9310
(((.(((((	chr1:29485725-29485987(-)$1	1	29	38	12.6034
(((((((((	chr19:14523182-14523461(-)$1	1	67	76	15.3620
(((..((((	chr2:27246243-27246510(+)$1	1	161	170	15.3620
))...))))	chr5:175957894-175958132(-)$1	1	216	225	15.1034
))..))...	chr3:47050364-47050592(+)$1	1	106	115	11.0517
).)))))).	chr19:54682370-54682582(-)$1	1	166	175	12.1724
((((.((((	chr22:38046154-38046414(+)$1	1	39	48	10.5344
..))).)))	chr11:70265903-70266110(+)$1	1	79	88	18.8103
(......))	chr16:4412501-4412713(-)$1	1	19	28	18.8103
.))))))))	chr7:150649826-150650046(-)$1	1	43	52	12.0862
(......).	chr17:43011152-43011391(-)$1	1	26	35	18.8103
(((((((((	chr12:133383743-133383999(-)$1	1	140	149	12.1724
...(((((.	chr2:102483667-102483918(+)$1	1	90	99	14.1551
(((((((((	chr19:46357321-46357533(-)$1	1	23	32	12.6034
((.((((((	chr10:72513438-72513690(+)$1	1	31	40	12.1724
))))))..(	chr17:42931485-42931737(-)$1	1	106	115	11.3965
...))..))	chr11:64674583-64674828(-)$1	1	233	242	11.1379
(((((((((	chr21:45539148-45539407(+)$1	1	16	25	12.2586
((..(((((	chr1:228285052-228285300(+)$1	1	129	138	12.2586
......)))	chr19:50322304-50322563(+)$1	1	202	211	15.3620
((((((.((	chr1:54707768-54708009(-)$1	1	53	62	13.3793
)))).)).)	chr14:69259443-69259700(-)$1	1	224	233	11.7413
)))))((((	chr1:151341883-151342186(-)$1	1	79	88	11.1379
..))))..(	chr7:5544880-5545143(-)$1	1	167	176	11.9137

#PSSM
C : 0.82	G : 0.08	U : 0.05	A : 0.01	c : 0.01	
C : 0.82	U : 0.08	A : 0.05	G : 0.01	c : 0.01	
C : 0.86	U : 0.10	A : 0.01	c : 0.01	
U : 0.77	A : 0.10	G : 0.05	C : 0.05	u : 0.01	
C : 0.74	G : 0.15	A : 0.05	U : 0.03	g : 0.01	
C : 0.93	U : 0.03	A : 0.01	c : 0.01	
A : 0.67	U : 0.17	C : 0.06	G : 0.06	a : 0.01	
G : 0.75	C : 0.12	A : 0.05	U : 0.05	g : 0.01	
C : 0.84	A : 0.06	G : 0.05	U : 0.01	u : 0.01	

#score	759.9655172413796
#seq	58
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_UTR_m1_run1.nuc.txt

#NT
AGAGGCUG	chr1:46073462-46073734(+)$1	272	167	175	15.8965
CGUGGCUG	chr17:79532338-79532603(-)$1	265	104	112	13.0517
GGAGGCUC	chr17:36904258-36904522(-)$1	264	175	183	12.1896
GGCGGCUG	chr19:1422321-1422576(+)$1	255	160	168	14.5172
GGGGGCUG	chr20:62331782-62332015(-)$1	233	68	76	14.8620
GGACGCUG	chr14:103800511-103800774(+)$1	263	16	24	12.5344
GGAGCCUG	chr17:17720834-17721085(-)$1	251	42	50	12.7068
GCAGGCUG	chr7:150020569-150020829(+)$1	260	55	63	12.3620
GGAGGCGG	chr18:47018513-47018766(-)$1	253	63	71	13.3103
GAAGGCUG	chr11:72533513-72533775(+)$1	262	42	50	12.4482
AGAGGCCG	chr20:55926404-55926687(+)$1	283	126	134	12.5344
AGGGGCUG	chr16:28847368-28847611(+)$1	243	171	179	13.7413
GGAGGCCG	chr19:39125684-39125937(+)$1	253	127	135	13.6551
GGAGGCUG	chr9:140347338-140347584(-)$1	246	28	36	17.0172
GGUGGCUG	chr5:138629412-138629679(+)$1	267	113	121	14.2586
UGAGGCCG	chr3:10362382-10362617(-)$1	235	64	72	12.3620
AGUGGCUG	chr17:37009762-37010014(-)$1	252	106	114	13.1379
AGAGGCUG	chr4:1229684-1229928(-)$1	244	60	68	15.8965
UGGGGCUG	chr2:74719501-74719767(+)$1	266	81	89	13.5689
UGGGGCUG	chr19:18668653-18668973(+)$1	320	107	115	13.5689
GGAGGCUG	chr17:42266882-42267128(+)$1	246	136	144	17.0172
CGAGGCGG	chr1:146714422-146714697(+)$1	275	8	16	12.1034
CGAGGCCG	chr10:28822888-28823143(+)$1	255	83	91	12.4482
GGAUGCUG	chr19:18468345-18468603(+)$1	258	8	16	12.6206
CGGGGCUG	chr2:62115288-62115605(-)$1	317	1	9	13.6551
GGAGCCUG	chr9:135930356-135930614(+)$1	258	120	128	12.7068
AGUGGCUG	chr16:4736233-4736481(+)$1	248	228	236	13.1379
GGGGGCUG	chr20:62331815-62332026(-)$1	211	79	87	14.8620
ggaggcug	chr12:49723171-49723414(+)$1	243	196	204	17.0172
AGAGGCCG	chr17:79082235-79082485(+)$1	250	120	128	12.5344
CGAAGCUG	chr14:78227256-78227525(-)$1	269	236	244	11.4137
GGCGGCUG	chr17:4851343-4851621(-)$1	278	200	208	14.5172
GGCGGCUG	chr12:125398932-125399190(-)$1	258	209	217	14.5172
CGGGGCUG	chr17:74732713-74732977(-)$1	264	102	110	13.6551
UGAGGCAG	chr1:45987295-45987544(-)$1	249	161	169	11.9310
UGAGGCAG	chr2:233415370-233415680(+)$1	310	34	42	11.9310
GGCGGCUG	chr16:2317880-2318129(-)$1	249	31	39	14.5172
CGAGCCUG	chr5:177631659-177631951(+)$1	292	17	25	11.5000
UGAGGCUG	chr12:3069171-3069384(+)$1	213	156	164	15.7241
CGCGGCUG	chr9:131830527-131830830(+)$1	303	202	210	13.3103
UGAAGCUG	chr1:162336931-162337186(+)$1	255	81	89	11.3275
UGAGGCUG	chr1:193028837-193029097(+)$1	260	170	178	15.7241
GGAGGCUG	chr3:184081019-184081291(+)$1	272	78	86	17.0172
AGAGGCCG	chr20:34319691-34319936(-)$1	245	51	59	12.5344
GGCGGCUG	chr8:48920954-48921219(+)$1	265	33	41	14.5172
AGGGGCUG	chr5:73935971-73936197(-)$1	226	114	122	13.7413
AGGGGCUG	chr5:73935956-73936171(-)$1	215	88	96	13.7413
UGAGGCUG	chr9:139752458-139752721(+)$1	263	151	159	15.7241
AGAUGCUG	chr17:80441571-80441844(+)$1	273	63	71	11.5000
GGAGGAUG	chr1:53373359-53373607(-)$1	248	211	219	12.1896
GAAGGCUG	chr15:41099389-41099642(-)$1	253	93	101	12.4482
CGCGGCUG	chr14:64971592-64971850(+)$1	258	12	20	13.3103
AGAGGCGG	chr9:33025278-33025552(+)$1	274	17	25	12.1896
CGAGGCUG	chr15:78591704-78591975(-)$1	271	159	167	15.8103
UGAGGCCG	chr3:10362417-10362630(-)$1	213	77	85	12.3620
GGGGGCUG	chr16:2014635-2014885(-)$1	250	199	207	14.8620
CGGGGCUG	chr9:74979409-74979681(-)$1	272	80	88	13.6551

#otherMatches

#Struct PSSM
gggggggp	chr16:2034873-2035110(+)$1	237	106	114	12.7068
:ffffffn	chr1:46073462-46073734(+)$1	272	167	175	15.8965
cc]ccc]d	chr17:79532338-79532603(-)$1	265	104	112	13.0517
IIccc!!d	chr17:36904258-36904522(-)$1	264	175	183	12.1896
ee:fffff	chr19:1422321-1422576(+)$1	255	160	168	14.5172
hhhFFFFF	chr20:62331782-62332015(-)$1	233	68	76	14.8620
EE{EEEEE	chr14:103800511-103800774(+)$1	263	16	24	12.5344
gggg[ccc	chr17:17720834-17721085(-)$1	251	42	50	12.7068
===]bb]f	chr7:150020569-150020829(+)$1	260	55	63	12.3620
ffffffmm	chr18:47018513-47018766(-)$1	253	63	71	13.3103
ddd[bb&&	chr11:72533513-72533775(+)$1	262	42	50	12.4482
!eeeeeoo	chr20:55926404-55926687(+)$1	283	126	134	12.5344
ff333bb]	chr16:28847368-28847611(+)$1	243	171	179	13.7413
dddd]ggg	chr19:39125684-39125937(+)$1	253	127	135	13.6551
bb[cccbb	chr9:140347338-140347584(-)$1	246	28	36	17.0172
[bb[ccc"	chr5:138629412-138629679(+)$1	267	113	121	14.2586
bb]dddd2	chr3:10362382-10362617(-)$1	235	64	72	12.3620
ddccc]cc	chr17:37009762-37010014(-)$1	252	106	114	13.1379
2bb]ccc6	chr4:1229684-1229928(-)$1	244	60	68	15.8965
3ffffff:	chr2:74719501-74719767(+)$1	266	81	89	13.5689
e[a[ccc"	chr19:18668653-18668973(+)$1	320	107	115	13.5689
cc[fffff	chr17:42266882-42267128(+)$1	246	136	144	17.0172
DD{A{A{E	chr1:146714422-146714697(+)$1	275	8	16	12.1034
c22bbBBK	chr10:28822888-28823143(+)$1	255	83	91	12.4482
occccccp	chr19:18468345-18468603(+)$1	258	8	16	12.6206
:EEEEEKK	chr2:62115288-62115605(-)$1	317	1	9	13.6551
d22ccc]d	chr9:135930356-135930614(+)$1	258	120	128	12.7068
FF}FFFFF	chr16:4736233-4736481(+)$1	248	228	236	13.1379
hhhhhh::	chr20:62331815-62332026(-)$1	211	79	87	14.8620
gmmmmggg	chr12:49723171-49723414(+)$1	243	196	204	17.0172
FF{HHHHH	chr17:79082235-79082485(+)$1	250	120	128	12.5344
ff]ccc]a	chr14:78227256-78227525(-)$1	269	236	244	11.4137
pbb]ccc:	chr17:4851343-4851621(-)$1	278	200	208	14.5172
obbFFFFF	chr12:125398932-125399190(-)$1	258	209	217	14.5172
NBBEEEEE	chr17:74732713-74732977(-)$1	264	102	110	13.6551
d[ffffff	chr1:45987295-45987544(-)$1	249	161	169	11.9310
mmmbb]ff	chr2:233415370-233415680(+)$1	310	34	42	11.9310
CC{IIIII	chr16:2317880-2318129(-)$1	249	31	39	14.5172
eeeeeJJJ	chr5:177631659-177631951(+)$1	292	17	25	11.5000
FFFFccc[	chr12:3069171-3069384(+)$1	213	156	164	15.7241
KA{CCC{G	chr9:131830527-131830830(+)$1	303	202	210	13.3103
hh22bb]a	chr1:162336931-162337186(+)$1	255	81	89	11.3275
3eeeeebb	chr1:193028837-193029097(+)$1	260	170	178	15.7241
d!!eeeee	chr3:184081019-184081291(+)$1	272	78	86	17.0172
hhhhccc[	chr20:34319691-34319936(-)$1	245	51	59	12.5344
g[dddd[b	chr8:48920954-48921219(+)$1	265	33	41	14.5172
4dddd22d	chr5:73935971-73936197(-)$1	226	114	122	13.7413
4dddd22d	chr5:73935956-73936171(-)$1	215	88	96	13.7413
a]dddd:G	chr9:139752458-139752721(+)$1	263	151	159	15.7241
ee:::DDD	chr17:80441571-80441844(+)$1	273	63	71	11.5000
qqqqqbb2	chr1:53373359-53373607(-)$1	248	211	219	12.1896
gggggccc	chr15:41099389-41099642(-)$1	253	93	101	12.4482
========	chr14:64971592-64971850(+)$1	258	12	20	13.3103
cc[bb[ii	chr9:33025278-33025552(+)$1	274	17	25	12.1896
f[ccc!!e	chr15:78591704-78591975(-)$1	271	159	167	15.8103
[ddddqqq	chr3:10362417-10362630(-)$1	213	77	85	12.3620
eeeeFFFF	chr16:2014635-2014885(-)$1	250	199	207	14.8620
dddd22dd	chr9:74979409-74979681(-)$1	272	80	88	13.6551

#DB
(((((((.	chr16:2034873-2035110(+)$1	1	106	114	12.7068
.((((((.	chr1:46073462-46073734(+)$1	1	167	175	15.8965
)).))).)	chr17:79532338-79532603(-)$1	1	104	112	13.0517
))(((..(	chr17:36904258-36904522(-)$1	1	175	183	12.1896
)).(((((	chr19:1422321-1422576(+)$1	1	160	168	14.5172
)))(((((	chr20:62331782-62332015(-)$1	1	68	76	14.8620
((.(((((	chr14:103800511-103800774(+)$1	1	16	24	12.5344
((((.(((	chr17:17720834-17721085(-)$1	1	42	50	12.7068
))).)).)	chr7:150020569-150020829(+)$1	1	55	63	12.3620
((((((..	chr18:47018513-47018766(-)$1	1	63	71	13.3103
(((.((..	chr11:72533513-72533775(+)$1	1	42	50	12.4482
.(((((..	chr20:55926404-55926687(+)$1	1	126	134	12.5344
))...)).	chr16:28847368-28847611(+)$1	1	171	179	13.7413
)))).)))	chr19:39125684-39125937(+)$1	1	127	135	13.6551
((.(((((	chr9:140347338-140347584(-)$1	1	28	36	17.0172
.((.(((.	chr5:138629412-138629679(+)$1	1	113	121	14.2586
)).)))).	chr3:10362382-10362617(-)$1	1	64	72	12.3620
))))).))	chr17:37009762-37010014(-)$1	1	106	114	13.1379
.)).))).	chr4:1229684-1229928(-)$1	1	60	68	15.8965
.)))))).	chr2:74719501-74719767(+)$1	1	81	89	13.5689
(.(.(((.	chr19:18668653-18668973(+)$1	1	107	115	13.5689
((.(((((	chr17:42266882-42267128(+)$1	1	136	144	17.0172
((.(.(.(	chr1:146714422-146714697(+)$1	1	8	16	12.1034
)..))((.	chr10:28822888-28823143(+)$1	1	83	91	12.4482
.)))(((.	chr19:18468345-18468603(+)$1	1	8	16	12.6206
.(((((..	chr2:62115288-62115605(-)$1	1	1	9	13.6551
)..))).)	chr9:135930356-135930614(+)$1	1	120	128	12.7068
)).)))))	chr16:4736233-4736481(+)$1	1	228	236	13.1379
))))))..	chr20:62331815-62332026(-)$1	1	79	87	14.8620
(....)))	chr12:49723171-49723414(+)$1	1	196	204	17.0172
((.(((((	chr17:79082235-79082485(+)$1	1	120	128	12.5344
)).))).)	chr14:78227256-78227525(-)$1	1	236	244	11.4137
.)).))).	chr17:4851343-4851621(-)$1	1	200	208	14.5172
.)))))))	chr12:125398932-125399190(-)$1	1	209	217	14.5172
.(((((((	chr17:74732713-74732977(-)$1	1	102	110	13.6551
(.((((((	chr1:45987295-45987544(-)$1	1	161	169	11.9310
...)).))	chr2:233415370-233415680(+)$1	1	34	42	11.9310
((.(((((	chr16:2317880-2318129(-)$1	1	31	39	14.5172
)))))(((	chr5:177631659-177631951(+)$1	1	17	25	11.5000
))))(((.	chr12:3069171-3069384(+)$1	1	156	164	15.7241
.(.(((.(	chr9:131830527-131830830(+)$1	1	202	210	13.3103
))..)).)	chr1:162336931-162337186(+)$1	1	81	89	11.3275
.)))))))	chr1:193028837-193029097(+)$1	1	170	178	15.7241
(..(((((	chr3:184081019-184081291(+)$1	1	78	86	17.0172
(((((((.	chr20:34319691-34319936(-)$1	1	51	59	12.5344
(.((((.(	chr8:48920954-48921219(+)$1	1	33	41	14.5172
.))))..)	chr5:73935971-73936197(-)$1	1	114	122	13.7413
.))))..)	chr5:73935956-73936171(-)$1	1	88	96	13.7413
).)))).)	chr9:139752458-139752721(+)$1	1	151	159	15.7241
))...)))	chr17:80441571-80441844(+)$1	1	63	71	11.5000
.....)).	chr1:53373359-53373607(-)$1	1	211	219	12.1896
((((((((	chr15:41099389-41099642(-)$1	1	93	101	12.4482
((((((((	chr14:64971592-64971850(+)$1	1	12	20	13.3103
((.((.((	chr9:33025278-33025552(+)$1	1	17	25	12.1896
(.(((..(	chr15:78591704-78591975(-)$1	1	159	167	15.8103
.((((...	chr3:10362417-10362630(-)$1	1	77	85	12.3620
))))))))	chr16:2014635-2014885(-)$1	1	199	207	14.8620
))))..))	chr9:74979409-74979681(-)$1	1	80	88	13.6551

#PSSM
G : 0.41	A : 0.20	C : 0.18	U : 0.17	g : 0.01	
G : 0.93	A : 0.03	C : 0.01	g : 0.01	
A : 0.60	G : 0.18	C : 0.12	U : 0.06	a : 0.01	
G : 0.89	U : 0.03	A : 0.03	C : 0.01	g : 0.01	
G : 0.91	C : 0.06	g : 0.01	
C : 0.96	c : 0.01	A : 0.01	
U : 0.77	C : 0.12	G : 0.05	A : 0.03	u : 0.01	
G : 0.96	C : 0.01	g : 0.01	

#score	790.1034482758625
#seq	58
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_UTR_m3_run2.nuc.txt

#NT
ucccucuucccuucc	chr14:63838648-63838912(-)$1	264	132	147	24.1860
UCCCUCUCUCUUUCC	chr5:112227540-112227837(-)$1	297	280	295	20.3488
ugccucuccucuucc	chr11:62566448-62566670(-)$1	222	133	148	21.5116
UCCCUCUCCccuucc	chr2:240899026-240899288(-)$1	262	13	28	27.2093
ucucugucccuuucu	chr19:48958301-48958569(+)$1	268	74	89	20.5813
ccugucuccccuccc	chr19:54377832-54378095(+)$1	263	26	41	21.5116
UAUCUAUCUCCUUCU	chr17:34957000-34957267(+)$1	267	79	94	16.1627
ccugucuccccuccc	chr19:54377739-54377980(+)$1	241	119	134	21.5116
ccucucuccucuucc	chrX:133930582-133930860(-)$1	278	105	120	26.0465
ucccuccccccuccc	chrX:79927770-79928019(-)$1	249	88	103	19.4186
ucuuucuuccuuucu	chr5:114858510-114858770(-)$1	260	67	82	18.9534
ucuuucucccuuuuc	chr11:62566476-62566732(-)$1	256	19	34	20.4651
ucucugucccccucc	chr19:48958114-48958372(+)$1	258	133	148	23.7209
ACUUUCUUCCCUCCC	chr12:62990960-62991243(+)$1	283	26	41	17.9069
ccucucaccucuucu	chr19:4390234-4390492(-)$1	258	40	55	19.4186
CCUCUCUUCCCCUUC	chr11:57585399-57585694(+)$1	295	5	20	18.7209
UCUCUCUUCUCUUCU	chr11:62567491-62567713(-)$1	222	49	64	22.5581
UGUUUCACCGCUUCC	chr1:1258219-1258503(-)$1	284	253	268	16.2790
ucucugucccccucc	chr19:48957982-48958285(+)$1	303	265	280	23.7209
UACCUCUCCCUUUCC	chr6:24719454-24719706(-)$1	252	80	95	20.2325
ucucuggccucuugc	chr2:176791714-176791972(-)$1	258	115	130	15.6976
ucuuucuccaccucu	chr1:150975343-150975611(-)$1	268	80	95	19.5348
ucucucuuccccucc	chr16:58054298-58054559(+)$1	261	136	151	24.4186
UCUUUCUCUCCUUGC	chr19:54378167-54378412(+)$1	245	142	157	19.8837
UUUCUUUCCCCUUCC	chr1:151668949-151669172(+)$1	223	145	160	22.0930
ccccucuccucuucu	chr7:100075799-100076054(-)$1	255	200	215	21.0465
ucccucucucccuuc	chr19:4390348-4390617(-)$1	269	56	71	17.3255
ccuuucucccccucu	chr19:41828789-41829025(+)$1	236	155	170	20.9302
ucucucucccucucc	chrX:80065035-80065286(-)$1	251	79	94	24.1860
UCCCUCUCCUCUCCU	chr12:49330121-49330351(-)$1	230	117	132	19.5348
ucucucucucccucc	chr1:47694942-47695183(-)$1	241	82	97	23.8372
ccucucuccuccucc	chr7:150758716-150759010(+)$1	294	51	66	23.6046
ucuuccuccccuucc	chr16:2819022-2819287(+)$1	265	177	192	22.7906
CUcuucuccccuucc	chrX:153294387-153294675(-)$1	288	70	85	19.1860
CCUGUCUCCCCUUCU	chr20:35090780-35091072(+)$1	292	102	117	22.5581
ccucucuccuccucc	chr7:150758577-150758904(+)$1	327	190	205	23.6046
uaucucuccccucuc	chr14:21490684-21490940(-)$1	256	47	62	18.9534
UCUCUCUCCCCUUCC	chr1:151670058-151670350(+)$1	292	103	118	29.8837
UCUCUCUUCUCUUCU	chr11:62567513-62567754(-)$1	241	90	105	22.5581
ucuuucuguccuuca	chr6:27223572-27223825(+)$1	253	53	68	16.6279
ccucucuccuuuucc	chr11:68504071-68504362(-)$1	291	128	143	22.7906
CCUCUUUUCUCUUCC	chr12:58175442-58175778(+)$1	336	85	100	19.0697

#otherMatches

#Struct PSSM
::::::::::::::D	chr11:71808925-71809256(-)$1	331	146	161	18.8372
:::::::::::::::	chr14:63838648-63838912(-)$1	264	132	147	24.1860
:::::::::::::::	chr5:112227540-112227837(-)$1	297	280	295	20.3488
EEBB:::::::::::	chr11:62566448-62566670(-)$1	222	133	148	21.5116
:::::::::::::::	chr2:240899026-240899288(-)$1	262	13	28	27.2093
]a333a]ccc99999	chr19:48958301-48958569(+)$1	268	74	89	20.5813
:::::::::::::::	chr19:54377832-54378095(+)$1	263	26	41	21.5116
:::::::::::::::	chr17:34957000-34957267(+)$1	267	79	94	16.1627
:::::::::::::::	chr19:54377739-54377980(+)$1	241	119	134	21.5116
>>ccc]ccc888888	chrX:133930582-133930860(-)$1	278	105	120	26.0465
:::::::::::::::	chrX:79927770-79928019(-)$1	249	88	103	19.4186
^^^^^^^^^^^^^^^	chr5:114858510-114858770(-)$1	260	67	82	18.9534
H::::::::::::::	chr11:62566476-62566732(-)$1	256	19	34	20.4651
::::::::::cccoo	chr19:48958114-48958372(+)$1	258	133	148	23.7209
:::::::::::::::	chr12:62990960-62991243(+)$1	283	26	41	17.9069
EEE::::::::::::	chr19:4390234-4390492(-)$1	258	40	55	19.4186
::ffffffdddd"""	chr11:57585399-57585694(+)$1	295	5	20	18.7209
oooooa]dddd4444	chr11:62567491-62567713(-)$1	222	49	64	22.5581
bblllbb22eeeee:	chr1:1258219-1258503(-)$1	284	253	268	16.2790
::::::::::cccoo	chr19:48957982-48958285(+)$1	303	265	280	23.7209
gg:::::::::::::	chr6:24719454-24719706(-)$1	252	80	95	20.2325
"a[eeeee!!eeeee	chr2:176791714-176791972(-)$1	258	115	130	15.6976
^^^^^^^^^^^^^^^	chr1:150975343-150975611(-)$1	268	80	95	19.5348
:::::::::::::::	chr16:58054298-58054559(+)$1	261	136	151	24.4186
qqqqqqdddd333bb	chr19:54378167-54378412(+)$1	245	142	157	19.8837
:::::::::::::::	chr1:151668949-151669172(+)$1	223	145	160	22.0930
II:::::::::::::	chr7:100075799-100076054(-)$1	255	200	215	21.0465
^^^^^^^^^^^^^^^	chr19:4390348-4390617(-)$1	269	56	71	17.3255
:::::::::::::::	chr19:41828789-41829025(+)$1	236	155	170	20.9302
MMBBLLLCCC:::::	chrX:80065035-80065286(-)$1	251	79	94	24.1860
dddd:::::::eeee	chr12:49330121-49330351(-)$1	230	117	132	19.5348
cc:::::EEEEEYYB	chr1:47694942-47695183(-)$1	241	82	97	23.8372
B:::::ggggggg++	chr7:150758716-150759010(+)$1	294	51	66	23.6046
SSSSSSSSSSDDDD:	chr16:2819022-2819287(+)$1	265	177	192	22.7906
:::::::::::::::	chrX:153294387-153294675(-)$1	288	70	85	19.1860
ECCC{CCC{ADDDDN	chr20:35090780-35091072(+)$1	292	102	117	22.5581
:::::::::::::::	chr7:150758577-150758904(+)$1	327	190	205	23.6046
:::::::::::::::	chr14:21490684-21490940(-)$1	256	47	62	18.9534
^^^^^^^^^^^^^^^	chr1:151670058-151670350(+)$1	292	103	118	29.8837
oooooa]dddd4444	chr11:62567513-62567754(-)$1	241	90	105	22.5581
:::::::::::::::	chr6:27223572-27223825(+)$1	253	53	68	16.6279
:::ccc"""gggggg	chr11:68504071-68504362(-)$1	291	128	143	22.7906
ii^^^^^^^^^^^^^	chr12:58175442-58175778(+)$1	336	85	100	19.0697

#DB
..............(	chr11:71808925-71809256(-)$1	1	146	161	18.8372
...............	chr14:63838648-63838912(-)$1	1	132	147	24.1860
...............	chr5:112227540-112227837(-)$1	1	280	295	20.3488
((((...........	chr11:62566448-62566670(-)$1	1	133	148	21.5116
...............	chr2:240899026-240899288(-)$1	1	13	28	27.2093
.)...).))).....	chr19:48958301-48958569(+)$1	1	74	89	20.5813
...............	chr19:54377832-54378095(+)$1	1	26	41	21.5116
...............	chr17:34957000-34957267(+)$1	1	79	94	16.1627
...............	chr19:54377739-54377980(+)$1	1	119	134	21.5116
..))).)))......	chrX:133930582-133930860(-)$1	1	105	120	26.0465
...............	chrX:79927770-79928019(-)$1	1	88	103	19.4186
...............	chr5:114858510-114858770(-)$1	1	67	82	18.9534
(..............	chr11:62566476-62566732(-)$1	1	19	34	20.4651
..........(((..	chr19:48958114-48958372(+)$1	1	133	148	23.7209
...............	chr12:62990960-62991243(+)$1	1	26	41	17.9069
(((............	chr19:4390234-4390492(-)$1	1	40	55	19.4186
..((((((((((...	chr11:57585399-57585694(+)$1	1	5	20	18.7209
.....).))))....	chr11:62567491-62567713(-)$1	1	49	64	22.5581
((...))..))))).	chr1:1258219-1258503(-)$1	1	253	268	16.2790
..........(((..	chr19:48957982-48958285(+)$1	1	265	280	23.7209
)).............	chr6:24719454-24719706(-)$1	1	80	95	20.2325
.(.(((((..(((((	chr2:176791714-176791972(-)$1	1	115	130	15.6976
...............	chr1:150975343-150975611(-)$1	1	80	95	19.5348
...............	chr16:58054298-58054559(+)$1	1	136	151	24.4186
......))))...))	chr19:54378167-54378412(+)$1	1	142	157	19.8837
...............	chr1:151668949-151669172(+)$1	1	145	160	22.0930
)).............	chr7:100075799-100076054(-)$1	1	200	215	21.0465
...............	chr19:4390348-4390617(-)$1	1	56	71	17.3255
...............	chr19:41828789-41829025(+)$1	1	155	170	20.9302
..((...(((.....	chrX:80065035-80065286(-)$1	1	79	94	24.1860
)))).......((((	chr12:49330121-49330351(-)$1	1	117	132	19.5348
)).....)))))..)	chr1:47694942-47695183(-)$1	1	82	97	23.8372
(.....(((((((..	chr7:150758716-150759010(+)$1	1	51	66	23.6046
..........((((.	chr16:2819022-2819287(+)$1	1	177	192	22.7906
...............	chrX:153294387-153294675(-)$1	1	70	85	19.1860
((((.(((.(((((.	chr20:35090780-35091072(+)$1	1	102	117	22.5581
...............	chr7:150758577-150758904(+)$1	1	190	205	23.6046
...............	chr14:21490684-21490940(-)$1	1	47	62	18.9534
...............	chr1:151670058-151670350(+)$1	1	103	118	29.8837
.....).))))....	chr11:62567513-62567754(-)$1	1	90	105	22.5581
...............	chr6:27223572-27223825(+)$1	1	53	68	16.6279
...(((...((((((	chr11:68504071-68504362(-)$1	1	128	143	22.7906
((.............	chr12:58175442-58175778(+)$1	1	85	100	19.0697

#PSSM
u : 0.41	U : 0.25	c : 0.20	C : 0.09	A : 0.02	
c : 0.55	C : 0.25	g : 0.04	A : 0.04	U : 0.04	G : 0.02	a : 0.02	
u : 0.51	U : 0.25	c : 0.13	C : 0.09	
c : 0.44	C : 0.25	u : 0.16	U : 0.06	g : 0.04	G : 0.02	
u : 0.62	U : 0.34	c : 0.02	
c : 0.55	C : 0.27	g : 0.09	U : 0.04	A : 0.02	
u : 0.58	U : 0.32	c : 0.02	a : 0.02	A : 0.02	g : 0.02	
c : 0.55	C : 0.23	U : 0.11	u : 0.06	g : 0.02	
c : 0.58	C : 0.27	U : 0.06	u : 0.06	
c : 0.46	C : 0.20	u : 0.18	U : 0.09	G : 0.02	a : 0.02	
c : 0.53	C : 0.27	u : 0.11	U : 0.04	a : 0.02	
u : 0.44	U : 0.30	c : 0.23	C : 0.02	
u : 0.55	U : 0.27	c : 0.11	C : 0.04	
c : 0.58	C : 0.27	u : 0.06	U : 0.02	g : 0.02	G : 0.02	
c : 0.51	C : 0.20	u : 0.13	U : 0.11	a : 0.02	

#score	909.4186046511626
#seq	43
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_UTR_m1_run2.nuc.txt

#NT
gggagg	chr2:200323329-200323582(-)$1	253	108	114	18.0000
GGGAGG	chr2:28974741-28974996(+)$1	255	90	96	18.0000
GGGAGG	chr12:53854820-53855024(+)$1	204	137	143	18.0000
GGGAGG	chr19:50436985-50437268(+)$1	283	31	37	18.0000
GGGAGG	chr1:201123356-201123642(-)$1	286	90	96	18.0000
GGGAGG	chr2:183902887-183903197(-)$1	310	275	281	18.0000
GGGAGG	chr5:114880171-114880445(-)$1	274	28	34	18.0000
GGGAGG	chr5:661795-662052(+)$1	257	228	234	18.0000
GGGAGG	chr12:123464896-123465182(+)$1	286	60	66	18.0000
gggagg	chrX:109245778-109246065(+)$1	287	11	17	18.0000
GGGAGG	chr7:6523173-6523413(-)$1	240	229	235	18.0000
GGGAGG	chr7:77166496-77166761(+)$1	265	222	228	18.0000
GGGAGG	chr11:85955899-85956194(+)$1	295	94	100	18.0000
GGGAGG	chr20:62330512-62330772(-)$1	260	77	83	18.0000
GGGAGG	chr17:37824306-37824592(+)$1	286	50	56	18.0000
GGGAGG	chr9:73002181-73002441(-)$1	260	72	78	18.0000
GGGAGG	chr9:139249277-139249513(+)$1	236	57	63	18.0000
GGGAGG	chr6:111136402-111136695(-)$1	293	94	100	18.0000
gggagg	chr19:38800314-38800649(-)$1	335	88	94	18.0000
GGGAGG	chr19:41119490-41119746(+)$1	256	196	202	18.0000
GGGAGG	chr11:64073789-64074023(+)$1	234	2	8	18.0000
GGGAgg	chr3:195635505-195635811(-)$1	306	39	45	18.0000
GGGAGG	chr4:2935786-2936057(-)$1	271	95	101	18.0000
GGGAGG	chr9:37465163-37465447(-)$1	284	90	96	18.0000
GGGAGG	chr19:50168465-50168696(-)$1	231	34	40	18.0000
GGGAGG	chr19:12832397-12832740(-)$1	343	11	17	18.0000
GGGAGG	chr15:73924970-73925243(-)$1	273	128	134	18.0000
gggagg	chr16:67596152-67596441(-)$1	289	89	95	18.0000
GGGAGG	chr11:208987-209287(+)$1	300	18	24	18.0000
GGGAGG	chr2:64068059-64068322(+)$1	263	71	77	18.0000
GGGAGG	chr2:62932886-62933150(+)$1	264	17	23	18.0000
GGGAGG	chr4:760986-761202(-)$1	216	148	154	18.0000
GGGAGG	chr3:41241458-41241777(+)$1	319	54	60	18.0000
GGGAGG	chr19:12832962-12833214(-)$1	252	95	101	18.0000
gggagg	chr17:43225822-43226100(+)$1	278	53	59	18.0000
GGGAGG	chr11:126146108-126146400(+)$1	292	124	130	18.0000
GGGAGG	chr16:30958911-30959181(+)$1	270	6	12	18.0000
GGGAgg	chr11:3013139-3013445(-)$1	306	1	7	18.0000
gggagg	chr22:50013719-50013948(-)$1	229	198	204	18.0000
GGGAGG	chr22:20104944-20105198(+)$1	254	119	125	18.0000
GGGAGG	chr20:62338554-62338786(-)$1	232	29	35	18.0000
gggagg	chr1:155947857-155948102(-)$1	245	159	165	18.0000
gggagg	chr12:95479147-95479423(-)$1	276	184	190	18.0000
gggagg	chr2:159313505-159313752(+)$1	247	97	103	18.0000
GGGAGG	chr4:78078322-78078654(+)$1	332	62	68	18.0000
GGGAGG	chr2:202065350-202065639(+)$1	289	32	38	18.0000
GGGAGG	chr6:41760523-41760783(-)$1	260	92	98	18.0000
gggagg	chr22:50013556-50013834(-)$1	278	84	90	18.0000
GGGAGG	chr3:9847920-9848179(+)$1	259	104	110	18.0000
GGGAGG	chr2:153574460-153574751(+)$1	291	90	96	18.0000
GGGAGG	chr19:56146710-56146964(+)$1	254	93	99	18.0000
GGGAGG	chr19:1585358-1585634(-)$1	276	66	72	18.0000
GGGAGG	chr19:1472934-1473202(-)$1	268	220	226	18.0000
GGGAGG	chr1:183442008-183442396(+)$1	388	10	16	18.0000
GGGAGG	chr17:2288464-2288729(-)$1	265	32	38	18.0000
GGGAGG	chr1:32403269-32403534(-)$1	265	2	8	18.0000

#otherMatches

#Struct PSSM
ILLLBB	chr14:32546364-32546624(+)$1	260	20	26	18.0000
iii[cc	chr2:200323329-200323582(-)$1	253	108	114	18.0000
F{A{DD	chr2:28974741-28974996(+)$1	255	90	96	18.0000
####bb	chr12:53854820-53855024(+)$1	204	137	143	18.0000
FFFFFF	chr19:50436985-50437268(+)$1	283	31	37	18.0000
YYAYYC	chr1:201123356-201123642(-)$1	286	90	96	18.0000
EEYYEE	chr2:183902887-183903197(-)$1	310	275	281	18.0000
22a]cc	chr5:114880171-114880445(-)$1	274	28	34	18.0000
=====]	chr5:661795-662052(+)$1	257	228	234	18.0000
======	chr12:123464896-123465182(+)$1	286	60	66	18.0000
DDD:::	chrX:109245778-109246065(+)$1	287	11	17	18.0000
}GGGGG	chr7:6523173-6523413(-)$1	240	229	235	18.0000
xxxxxx	chr7:77166496-77166761(+)$1	265	222	228	18.0000
fooooo	chr11:85955899-85956194(+)$1	295	94	100	18.0000
GGGGGG	chr20:62330512-62330772(-)$1	260	77	83	18.0000
^^^^^^	chr17:37824306-37824592(+)$1	286	50	56	18.0000
qqqqqq	chr9:73002181-73002441(-)$1	260	72	78	18.0000
dddd[i	chr9:139249277-139249513(+)$1	236	57	63	18.0000
ddd[cc	chr6:111136402-111136695(-)$1	293	94	100	18.0000
:HHHHH	chr19:38800314-38800649(-)$1	335	88	94	18.0000
oooooa	chr19:41119490-41119746(+)$1	256	196	202	18.0000
BB{A{E	chr11:64073789-64074023(+)$1	234	2	8	18.0000
cccmmm	chr3:195635505-195635811(-)$1	306	39	45	18.0000
gggggg	chr4:2935786-2936057(-)$1	271	95	101	18.0000
{HHHHH	chr9:37465163-37465447(-)$1	284	90	96	18.0000
[ddddp	chr19:50168465-50168696(-)$1	231	34	40	18.0000
BCCC{C	chr19:12832397-12832740(-)$1	343	11	17	18.0000
CCC::b	chr15:73924970-73925243(-)$1	273	128	134	18.0000
E{BBNN	chr16:67596152-67596441(-)$1	289	89	95	18.0000
JJJJJJ	chr11:208987-209287(+)$1	300	18	24	18.0000
bb22a]	chr2:64068059-64068322(+)$1	263	71	77	18.0000
"ccc[b	chr2:62932886-62933150(+)$1	264	17	23	18.0000
HHHHHH	chr4:760986-761202(-)$1	216	148	154	18.0000
cc:ddd	chr3:41241458-41241777(+)$1	319	54	60	18.0000
::::ff	chr19:12832962-12833214(-)$1	252	95	101	18.0000
::::::	chr17:43225822-43226100(+)$1	278	53	59	18.0000
dbb[dd	chr11:126146108-126146400(+)$1	292	124	130	18.0000
FFFFF{	chr16:30958911-30959181(+)$1	270	6	12	18.0000
DDD{JJ	chr11:3013139-3013445(-)$1	306	1	7	18.0000
_____I	chr22:50013719-50013948(-)$1	229	198	204	18.0000
cc!!a[	chr22:20104944-20105198(+)$1	254	119	125	18.0000
mmdddd	chr20:62338554-62338786(-)$1	232	29	35	18.0000
mmmmdd	chr1:155947857-155948102(-)$1	245	159	165	18.0000
ffff]b	chr12:95479147-95479423(-)$1	276	184	190	18.0000
LLEEEE	chr2:159313505-159313752(+)$1	247	97	103	18.0000
33bb]g	chr4:78078322-78078654(+)$1	332	62	68	18.0000
eeee22	chr2:202065350-202065639(+)$1	289	32	38	18.0000
E{DDDD	chr6:41760523-41760783(-)$1	260	92	98	18.0000
HHHHHH	chr22:50013556-50013834(-)$1	278	84	90	18.0000
dddd]i	chr3:9847920-9848179(+)$1	259	104	110	18.0000
]a333b	chr2:153574460-153574751(+)$1	291	90	96	18.0000
ee::::	chr19:56146710-56146964(+)$1	254	93	99	18.0000
e]accc	chr19:1585358-1585634(-)$1	276	66	72	18.0000
iii!!a	chr19:1472934-1473202(-)$1	268	220	226	18.0000
[a####	chr1:183442008-183442396(+)$1	388	10	16	18.0000
ffffff	chr17:2288464-2288729(-)$1	265	32	38	18.0000
:::::d	chr1:32403269-32403534(-)$1	265	2	8	18.0000

#DB
(...((	chr14:32546364-32546624(+)$1	1	20	26	18.0000
(((.((	chr2:200323329-200323582(-)$1	1	108	114	18.0000
(.(.((	chr2:28974741-28974996(+)$1	1	90	96	18.0000
....((	chr12:53854820-53855024(+)$1	1	137	143	18.0000
((((((	chr19:50436985-50437268(+)$1	1	31	37	18.0000
..)..)	chr1:201123356-201123642(-)$1	1	90	96	18.0000
))..))	chr2:183902887-183903197(-)$1	1	275	281	18.0000
..).))	chr5:114880171-114880445(-)$1	1	28	34	18.0000
))))).	chr5:661795-662052(+)$1	1	228	234	18.0000
((((((	chr12:123464896-123465182(+)$1	1	60	66	18.0000
(((...	chrX:109245778-109246065(+)$1	1	11	17	18.0000
.)))))	chr7:6523173-6523413(-)$1	1	229	235	18.0000
......	chr7:77166496-77166761(+)$1	1	222	228	18.0000
(.....	chr11:85955899-85956194(+)$1	1	94	100	18.0000
((((((	chr20:62330512-62330772(-)$1	1	77	83	18.0000
......	chr17:37824306-37824592(+)$1	1	50	56	18.0000
......	chr9:73002181-73002441(-)$1	1	72	78	18.0000
((((.(	chr9:139249277-139249513(+)$1	1	57	63	18.0000
(((.((	chr6:111136402-111136695(-)$1	1	94	100	18.0000
.(((((	chr19:38800314-38800649(-)$1	1	88	94	18.0000
.....)	chr19:41119490-41119746(+)$1	1	196	202	18.0000
((.(.(	chr11:64073789-64074023(+)$1	1	2	8	18.0000
(((...	chr3:195635505-195635811(-)$1	1	39	45	18.0000
))))))	chr4:2935786-2936057(-)$1	1	95	101	18.0000
.(((((	chr9:37465163-37465447(-)$1	1	90	96	18.0000
.((((.	chr19:50168465-50168696(-)$1	1	34	40	18.0000
((((.(	chr19:12832397-12832740(-)$1	1	11	17	18.0000
(((..(	chr15:73924970-73925243(-)$1	1	128	134	18.0000
(.((..	chr16:67596152-67596441(-)$1	1	89	95	18.0000
((((((	chr11:208987-209287(+)$1	1	18	24	18.0000
))..).	chr2:64068059-64068322(+)$1	1	71	77	18.0000
.(((.(	chr2:62932886-62933150(+)$1	1	17	23	18.0000
))))))	chr4:760986-761202(-)$1	1	148	154	18.0000
)).(((	chr3:41241458-41241777(+)$1	1	54	60	18.0000
....((	chr19:12832962-12833214(-)$1	1	95	101	18.0000
......	chr17:43225822-43226100(+)$1	1	53	59	18.0000
(((.((	chr11:126146108-126146400(+)$1	1	124	130	18.0000
(((((.	chr16:30958911-30959181(+)$1	1	6	12	18.0000
(((.((	chr11:3013139-3013445(-)$1	1	1	7	18.0000
.....)	chr22:50013719-50013948(-)$1	1	198	204	18.0000
((..(.	chr22:20104944-20105198(+)$1	1	119	125	18.0000
..))))	chr20:62338554-62338786(-)$1	1	29	35	18.0000
....))	chr1:155947857-155948102(-)$1	1	159	165	18.0000
)))).)	chr12:95479147-95479423(-)$1	1	184	190	18.0000
..((((	chr2:159313505-159313752(+)$1	1	97	103	18.0000
..)).)	chr4:78078322-78078654(+)$1	1	62	68	18.0000
))))..	chr2:202065350-202065639(+)$1	1	32	38	18.0000
(.((((	chr6:41760523-41760783(-)$1	1	92	98	18.0000
((((((	chr22:50013556-50013834(-)$1	1	84	90	18.0000
)))).)	chr3:9847920-9848179(+)$1	1	104	110	18.0000
.)...)	chr2:153574460-153574751(+)$1	1	90	96	18.0000
))....	chr19:56146710-56146964(+)$1	1	93	99	18.0000
).))))	chr19:1585358-1585634(-)$1	1	66	72	18.0000
(((..(	chr19:1472934-1473202(-)$1	1	220	226	18.0000
.(....	chr1:183442008-183442396(+)$1	1	10	16	18.0000
))))))	chr17:2288464-2288729(-)$1	1	32	38	18.0000
.....(	chr1:32403269-32403534(-)$1	1	2	8	18.0000

#PSSM
G : 0.82	g : 0.17	
G : 0.82	g : 0.17	
G : 0.82	g : 0.17	
A : 0.82	a : 0.17	
G : 0.78	g : 0.21	
G : 0.78	g : 0.21	

#score	1026.0000000000005
#seq	57
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_UTR_m3_run2.nuc.txt

#NT
UCUG	chr3:184052451-184052687(+)$1	236	185	189	11.9999
UCUG	chr10:102121453-102121692(+)$1	239	29	33	11.9999
UCUG	chr17:53470416-53470655(-)$1	239	91	95	11.9999
UCUG	chr4:6643756-6644014(+)$1	258	52	56	11.9999
UCUG	chr11:494577-494869(-)$1	292	75	79	11.9999
UCUG	chr17:57737808-57738046(+)$1	238	17	21	11.9999
UCUG	chr6:42905385-42905670(+)$1	285	51	55	11.9999
UCUG	chrX:53405636-53405896(-)$1	260	67	71	11.9999
UCUG	chr17:73774306-73774607(-)$1	301	183	187	11.9999
UCUG	chr9:134350925-134351180(+)$1	255	143	147	11.9999
UCUG	chr1:220870877-220871131(+)$1	254	88	92	11.9999
UCUG	chr4:166263045-166263316(+)$1	271	122	126	11.9999
UCUG	chr11:47800371-47800597(-)$1	226	62	66	11.9999
UCUG	chr6:31526411-31526678(+)$1	267	158	162	11.9999
UCUG	chr19:47506132-47506380(+)$1	248	82	86	11.9999
UCUG	chr12:45824000-45824251(+)$1	251	188	192	11.9999
UCUG	chr13:75859441-75859693(-)$1	252	113	117	11.9999
UCUG	chr14:68144926-68145209(-)$1	283	91	95	11.9999
UCUG	chr6:7289850-7290091(-)$1	241	128	132	11.9999
UCUG	chr3:32935213-32935462(+)$1	249	82	86	11.9999
UCUG	chr7:6063391-6063658(-)$1	267	62	66	11.9999
UCUG	chr11:86659676-86659951(-)$1	275	15	19	11.9999
UCUG	chr3:169810455-169810725(-)$1	270	161	165	11.9999
ucug	chr17:38436550-38436820(+)$1	270	24	28	11.9999
UCUG	chr17:61823247-61823467(-)$1	220	23	27	11.9999
UCUG	chr3:32523394-32523645(-)$1	251	157	161	11.9999
UCUG	chr9:34635231-34635505(-)$1	274	113	117	11.9999
UCUG	chr16:30786123-30786396(+)$1	273	14	18	11.9999
UCUG	chr11:110101467-110101758(-)$1	291	87	91	11.9999
UCUG	chr2:26612081-26612355(+)$1	274	29	33	11.9999
UCUG	chr3:176738623-176738880(-)$1	257	130	134	11.9999
UCUG	chr15:58932874-58933124(-)$1	250	36	40	11.9999
UCUG	chr14:70181179-70181468(+)$1	289	80	84	11.9999
UCUG	chr15:81269827-81270081(-)$1	254	78	82	11.9999
UCUG	chr6:29913126-29913344(+)$1	218	186	190	11.9999
UCUG	chr16:70607916-70608145(+)$1	229	124	128	11.9999
UCUG	chr1:100548025-100548287(+)$1	262	47	51	11.9999
UCUG	chr17:46138114-46138386(+)$1	272	222	226	11.9999
UCUG	chr14:56094526-56094790(+)$1	264	79	83	11.9999
UCUG	chr12:53421509-53421724(+)$1	215	42	46	11.9999
UCUG	chr2:113416390-113416680(+)$1	290	31	35	11.9999
UCUG	chr10:102738505-102738771(+)$1	266	207	211	11.9999
UCUG	chr16:18573121-18573332(-)$1	211	190	194	11.9999
UCUG	chr5:140908636-140908880(-)$1	244	28	32	11.9999
UCUG	chr3:195798180-195798412(-)$1	232	207	211	11.9999
UCUG	chr16:74497222-74497478(-)$1	256	105	109	11.9999
UCUG	chr1:9329298-9329618(+)$1	320	212	216	11.9999
UCUG	chr11:4113015-4113265(+)$1	250	60	64	11.9999
UCUG	chr6:7883381-7883599(-)$1	218	24	28	11.9999
UCUG	chr18:9588018-9588283(-)$1	265	82	86	11.9999
UCUG	chr1:167757478-167757744(+)$1	266	180	184	11.9999
UCUG	chr12:53421492-53421709(+)$1	217	59	63	11.9999
UCUG	chr17:41846272-41846521(-)$1	249	4	8	11.9999
UCUG	chr19:17692299-17692597(+)$1	298	30	34	11.9999
UCUG	chr2:38545961-38546237(-)$1	276	218	222	11.9999
UCUG	chr12:9245960-9246189(-)$1	229	107	111	11.9999
UCUG	chr3:184042628-184042885(+)$1	257	228	232	11.9999
UCUG	chr11:61025780-61026074(-)$1	294	278	282	11.9999
UCUG	chr11:62406400-62406629(-)$1	229	34	38	11.9999
UCUG	chr11:2150611-2150822(-)$1	211	82	86	11.9999
UCUG	chr6:142765710-142765945(+)$1	235	7	11	11.9999
UCUG	chr7:6509154-6509395(-)$1	241	108	112	11.9999
UCUG	chr1:230838259-230838476(-)$1	217	52	56	11.9999
UCUG	chr6:7882504-7882753(-)$1	249	74	78	11.9999
UCUG	chr11:129990506-129990758(+)$1	252	70	74	11.9999
UCUG	chrX:131507028-131507315(-)$1	287	161	165	11.9999
UCUG	chr3:51426234-51426475(+)$1	241	35	39	11.9999
UCUG	chr1:20978608-20978887(-)$1	279	129	133	11.9999
UCUG	chr16:74504970-74505210(-)$1	240	50	54	11.9999
UCUG	chr17:47005814-47006097(+)$1	283	86	90	11.9999
UCUG	chr20:44526315-44526546(+)$1	231	219	223	11.9999
ucug	chr1:101443914-101444200(+)$1	286	241	245	11.9999
UCUG	chr15:72638861-72639104(-)$1	243	155	159	11.9999
UCUG	chr11:120100226-120100472(+)$1	246	43	47	11.9999
UCUG	chr15:41572209-41572465(+)$1	256	55	59	11.9999
UCUG	chr11:61634153-61634404(+)$1	251	62	66	11.9999
UCUG	chr2:96850631-96850886(-)$1	255	101	105	11.9999
UCUG	chr12:93245901-93246161(-)$1	260	153	157	11.9999
UCUG	chr7:43664559-43664815(+)$1	256	227	231	11.9999
UCUG	chr9:4711543-4711802(-)$1	259	22	26	11.9999
UCUG	chr6:109689783-109690039(-)$1	256	189	193	11.9999
ucug	chr10:76940151-76940414(+)$1	263	147	151	11.9999
UCUG	chr15:76577876-76578080(-)$1	204	96	100	11.9999
UCUG	chr1:44088663-44088906(+)$1	243	70	74	11.9999

#otherMatches

#Struct PSSM
[ccc	chr17:904550-904794(+)$1	244	137	141	11.9999
sssf	chr3:184052451-184052687(+)$1	236	185	189	11.9999
::DD	chr10:102121453-102121692(+)$1	239	29	33	11.9999
!!cc	chr17:53470416-53470655(-)$1	239	91	95	11.9999
ggge	chr4:6643756-6644014(+)$1	258	52	56	11.9999
wwwi	chr11:494577-494869(-)$1	292	75	79	11.9999
DDDD	chr17:57737808-57738046(+)$1	238	17	21	11.9999
ccc]	chr6:42905385-42905670(+)$1	285	51	55	11.9999
dddd	chrX:53405636-53405896(-)$1	260	67	71	11.9999
====	chr17:73774306-73774607(-)$1	301	183	187	11.9999
===:	chr9:134350925-134351180(+)$1	255	143	147	11.9999
""a[	chr1:220870877-220871131(+)$1	254	88	92	11.9999
dddd	chr4:166263045-166263316(+)$1	271	122	126	11.9999
b]ff	chr11:47800371-47800597(-)$1	226	62	66	11.9999
]bb2	chr6:31526411-31526678(+)$1	267	158	162	11.9999
eFFF	chr19:47506132-47506380(+)$1	248	82	86	11.9999
{BBL	chr12:45824000-45824251(+)$1	251	188	192	11.9999
DDDD	chr13:75859441-75859693(-)$1	252	113	117	11.9999
mmme	chr14:68144926-68145209(-)$1	283	91	95	11.9999
GGGG	chr6:7289850-7290091(-)$1	241	128	132	11.9999
IIII	chr3:32935213-32935462(+)$1	249	82	86	11.9999
LLCC	chr7:6063391-6063658(-)$1	267	62	66	11.9999
{EEE	chr11:86659676-86659951(-)$1	275	15	19	11.9999
eeee	chr3:169810455-169810725(-)$1	270	161	165	11.9999
xxxx	chr17:38436550-38436820(+)$1	270	24	28	11.9999
eee:	chr17:61823247-61823467(-)$1	220	23	27	11.9999
dddd	chr3:32523394-32523645(-)$1	251	157	161	11.9999
::HH	chr9:34635231-34635505(-)$1	274	113	117	11.9999
iccc	chr16:30786123-30786396(+)$1	273	14	18	11.9999
mmmm	chr11:110101467-110101758(-)$1	291	87	91	11.9999
DDDE	chr2:26612081-26612355(+)$1	274	29	33	11.9999
eee2	chr3:176738623-176738880(-)$1	257	130	134	11.9999
EEEE	chr15:58932874-58933124(-)$1	250	36	40	11.9999
JJJJ	chr14:70181179-70181468(+)$1	289	80	84	11.9999
b]bb	chr15:81269827-81270081(-)$1	254	78	82	11.9999
mmmf	chr6:29913126-29913344(+)$1	218	186	190	11.9999
d333	chr16:70607916-70608145(+)$1	229	124	128	11.9999
BBLL	chr1:100548025-100548287(+)$1	262	47	51	11.9999
ttth	chr17:46138114-46138386(+)$1	272	222	226	11.9999
#eee	chr14:56094526-56094790(+)$1	264	79	83	11.9999
ccc]	chr12:53421509-53421724(+)$1	215	42	46	11.9999
KCCC	chr2:113416390-113416680(+)$1	290	31	35	11.9999
EEGG	chr10:102738505-102738771(+)$1	266	207	211	11.9999
JJJJ	chr16:18573121-18573332(-)$1	211	190	194	11.9999
dddd	chr5:140908636-140908880(-)$1	244	28	32	11.9999
eeee	chr3:195798180-195798412(-)$1	232	207	211	11.9999
eeee	chr16:74497222-74497478(-)$1	256	105	109	11.9999
ccpp	chr1:9329298-9329618(+)$1	320	212	216	11.9999
4hhh	chr11:4113015-4113265(+)$1	250	60	64	11.9999
####	chr6:7883381-7883599(-)$1	218	24	28	11.9999
hhhh	chr18:9588018-9588283(-)$1	265	82	86	11.9999
GGGG	chr1:167757478-167757744(+)$1	266	180	184	11.9999
ccc]	chr12:53421492-53421709(+)$1	217	59	63	11.9999
FFFF	chr17:41846272-41846521(-)$1	249	4	8	11.9999
mmff	chr19:17692299-17692597(+)$1	298	30	34	11.9999
oooo	chr2:38545961-38546237(-)$1	276	218	222	11.9999
EEEE	chr12:9245960-9246189(-)$1	229	107	111	11.9999
FFFF	chr3:184042628-184042885(+)$1	257	228	232	11.9999
H}A}	chr11:61025780-61026074(-)$1	294	278	282	11.9999
eeee	chr11:62406400-62406629(-)$1	229	34	38	11.9999
vvvv	chr11:2150611-2150822(-)$1	211	82	86	11.9999
rrrr	chr6:142765710-142765945(+)$1	235	7	11	11.9999
bbdd	chr7:6509154-6509395(-)$1	241	108	112	11.9999
dnnn	chr1:230838259-230838476(-)$1	217	52	56	11.9999
dddd	chr6:7882504-7882753(-)$1	249	74	78	11.9999
ffff	chr11:129990506-129990758(+)$1	252	70	74	11.9999
cccc	chrX:131507028-131507315(-)$1	287	161	165	11.9999
"eee	chr3:51426234-51426475(+)$1	241	35	39	11.9999
fff[	chr1:20978608-20978887(-)$1	279	129	133	11.9999
hhhh	chr16:74504970-74505210(-)$1	240	50	54	11.9999
JJJ:	chr17:47005814-47006097(+)$1	283	86	90	11.9999
eee2	chr20:44526315-44526546(+)$1	231	219	223	11.9999
22ee	chr1:101443914-101444200(+)$1	286	241	245	11.9999
DD}C	chr15:72638861-72639104(-)$1	243	155	159	11.9999
:::f	chr11:120100226-120100472(+)$1	246	43	47	11.9999
ccc[	chr15:41572209-41572465(+)$1	256	55	59	11.9999
eeee	chr11:61634153-61634404(+)$1	251	62	66	11.9999
qqqq	chr2:96850631-96850886(-)$1	255	101	105	11.9999
]bb4	chr12:93245901-93246161(-)$1	260	153	157	11.9999
EEE}	chr7:43664559-43664815(+)$1	256	227	231	11.9999
dd!!	chr9:4711543-4711802(-)$1	259	22	26	11.9999
JJJJ	chr6:109689783-109690039(-)$1	256	189	193	11.9999
3fff	chr10:76940151-76940414(+)$1	263	147	151	11.9999
iiii	chr15:76577876-76578080(-)$1	204	96	100	11.9999
ff]d	chr1:44088663-44088906(+)$1	243	70	74	11.9999

#DB
.(((	chr17:904550-904794(+)$1	1	137	141	11.9999
...)	chr3:184052451-184052687(+)$1	1	185	189	11.9999
..((	chr10:102121453-102121692(+)$1	1	29	33	11.9999
..((	chr17:53470416-53470655(-)$1	1	91	95	11.9999
((((	chr4:6643756-6644014(+)$1	1	52	56	11.9999
...)	chr11:494577-494869(-)$1	1	75	79	11.9999
((((	chr17:57737808-57738046(+)$1	1	17	21	11.9999
))).	chr6:42905385-42905670(+)$1	1	51	55	11.9999
))))	chrX:53405636-53405896(-)$1	1	67	71	11.9999
))))	chr17:73774306-73774607(-)$1	1	183	187	11.9999
))).	chr9:134350925-134351180(+)$1	1	143	147	11.9999
..(.	chr1:220870877-220871131(+)$1	1	88	92	11.9999
((((	chr4:166263045-166263316(+)$1	1	122	126	11.9999
).))	chr11:47800371-47800597(-)$1	1	62	66	11.9999
.)).	chr6:31526411-31526678(+)$1	1	158	162	11.9999
))))	chr19:47506132-47506380(+)$1	1	82	86	11.9999
.((.	chr12:45824000-45824251(+)$1	1	188	192	11.9999
((((	chr13:75859441-75859693(-)$1	1	113	117	11.9999
...)	chr14:68144926-68145209(-)$1	1	91	95	11.9999
))))	chr6:7289850-7290091(-)$1	1	128	132	11.9999
((((	chr3:32935213-32935462(+)$1	1	82	86	11.9999
..((	chr7:6063391-6063658(-)$1	1	62	66	11.9999
.(((	chr11:86659676-86659951(-)$1	1	15	19	11.9999
))))	chr3:169810455-169810725(-)$1	1	161	165	11.9999
....	chr17:38436550-38436820(+)$1	1	24	28	11.9999
))).	chr17:61823247-61823467(-)$1	1	23	27	11.9999
))))	chr3:32523394-32523645(-)$1	1	157	161	11.9999
..((	chr9:34635231-34635505(-)$1	1	113	117	11.9999
((((	chr16:30786123-30786396(+)$1	1	14	18	11.9999
....	chr11:110101467-110101758(-)$1	1	87	91	11.9999
((((	chr2:26612081-26612355(+)$1	1	29	33	11.9999
))).	chr3:176738623-176738880(-)$1	1	130	134	11.9999
((((	chr15:58932874-58933124(-)$1	1	36	40	11.9999
((((	chr14:70181179-70181468(+)$1	1	80	84	11.9999
).))	chr15:81269827-81270081(-)$1	1	78	82	11.9999
...)	chr6:29913126-29913344(+)$1	1	186	190	11.9999
)...	chr16:70607916-70608145(+)$1	1	124	128	11.9999
((..	chr1:100548025-100548287(+)$1	1	47	51	11.9999
...)	chr17:46138114-46138386(+)$1	1	222	226	11.9999
.(((	chr14:56094526-56094790(+)$1	1	79	83	11.9999
))).	chr12:53421509-53421724(+)$1	1	42	46	11.9999
.(((	chr2:113416390-113416680(+)$1	1	31	35	11.9999
))))	chr10:102738505-102738771(+)$1	1	207	211	11.9999
))))	chr16:18573121-18573332(-)$1	1	190	194	11.9999
((((	chr5:140908636-140908880(-)$1	1	28	32	11.9999
((((	chr3:195798180-195798412(-)$1	1	207	211	11.9999
))))	chr16:74497222-74497478(-)$1	1	105	109	11.9999
((..	chr1:9329298-9329618(+)$1	1	212	216	11.9999
.)))	chr11:4113015-4113265(+)$1	1	60	64	11.9999
....	chr6:7883381-7883599(-)$1	1	24	28	11.9999
((((	chr18:9588018-9588283(-)$1	1	82	86	11.9999
))))	chr1:167757478-167757744(+)$1	1	180	184	11.9999
))).	chr12:53421492-53421709(+)$1	1	59	63	11.9999
((((	chr17:41846272-41846521(-)$1	1	4	8	11.9999
..))	chr19:17692299-17692597(+)$1	1	30	34	11.9999
....	chr2:38545961-38546237(-)$1	1	218	222	11.9999
))))	chr12:9245960-9246189(-)$1	1	107	111	11.9999
))))	chr3:184042628-184042885(+)$1	1	228	232	11.9999
).).	chr11:61025780-61026074(-)$1	1	278	282	11.9999
((((	chr11:62406400-62406629(-)$1	1	34	38	11.9999
....	chr11:2150611-2150822(-)$1	1	82	86	11.9999
....	chr6:142765710-142765945(+)$1	1	7	11	11.9999
))))	chr7:6509154-6509395(-)$1	1	108	112	11.9999
(...	chr1:230838259-230838476(-)$1	1	52	56	11.9999
((((	chr6:7882504-7882753(-)$1	1	74	78	11.9999
))))	chr11:129990506-129990758(+)$1	1	70	74	11.9999
))))	chrX:131507028-131507315(-)$1	1	161	165	11.9999
.(((	chr3:51426234-51426475(+)$1	1	35	39	11.9999
(((.	chr1:20978608-20978887(-)$1	1	129	133	11.9999
))))	chr16:74504970-74505210(-)$1	1	50	54	11.9999
(((.	chr17:47005814-47006097(+)$1	1	86	90	11.9999
))).	chr20:44526315-44526546(+)$1	1	219	223	11.9999
..))	chr1:101443914-101444200(+)$1	1	241	245	11.9999
)).)	chr15:72638861-72639104(-)$1	1	155	159	11.9999
...(	chr11:120100226-120100472(+)$1	1	43	47	11.9999
(((.	chr15:41572209-41572465(+)$1	1	55	59	11.9999
((((	chr11:61634153-61634404(+)$1	1	62	66	11.9999
....	chr2:96850631-96850886(-)$1	1	101	105	11.9999
.)).	chr12:93245901-93246161(-)$1	1	153	157	11.9999
))).	chr7:43664559-43664815(+)$1	1	227	231	11.9999
((..	chr9:4711543-4711802(-)$1	1	22	26	11.9999
))))	chr6:109689783-109690039(-)$1	1	189	193	11.9999
.)))	chr10:76940151-76940414(+)$1	1	147	151	11.9999
))))	chr15:76577876-76578080(-)$1	1	96	100	11.9999
)).)	chr1:44088663-44088906(+)$1	1	70	74	11.9999

#PSSM
U : 0.96	u : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	

#score	1019.9999999999998
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_transcript_m1_run1.nuc.txt

#NT
GGGAG	chr10:80924753-80925001(+)$1	248	86	91	14.9999
GGGAG	chr1:183441844-183442090(+)$1	246	31	36	14.9999
GGGAG	chr11:61583313-61583609(-)$1	296	66	71	14.9999
GGGAG	chr15:69110811-69111056(-)$1	245	36	41	14.9999
GGGAG	chr6:31696774-31697042(-)$1	268	85	90	14.9999
GGGAG	chr19:17354323-17354560(-)$1	237	198	203	14.9999
GGGAG	chr22:49935292-49935529(-)$1	237	99	104	14.9999
GGGAG	chrX:53222225-53222482(-)$1	257	50	55	14.9999
GGGAG	chr17:45918364-45918626(-)$1	262	249	254	14.9999
gggag	chrX:152939733-152939987(-)$1	254	67	72	14.9999
GGGAG	chr2:132056444-132056710(+)$1	266	69	74	14.9999
GGGAG	chr1:227153580-227153821(+)$1	241	3	8	14.9999
GGGAG	chr12:54730926-54731171(+)$1	245	187	192	14.9999
GGGAG	chr4:1238149-1238373(-)$1	224	39	44	14.9999
GGGAG	chr19:50168527-50168748(-)$1	221	36	41	14.9999
GGGAG	chr15:52121799-52122096(+)$1	297	25	30	14.9999
GGGAG	chr7:106809591-106809918(+)$1	327	80	85	14.9999
GGGAG	chr19:49605903-49606153(+)$1	250	98	103	14.9999
GGGAG	chr19:6745112-6745387(+)$1	275	58	63	14.9999
GGGAG	chr7:99690997-99691251(-)$1	254	88	93	14.9999
GGGAG	chr6:29600533-29600830(-)$1	297	47	52	14.9999
GGGAG	chr19:49661001-49661299(+)$1	298	73	78	14.9999
GGGAG	chr22:32026228-32026554(-)$1	326	242	247	14.9999
gggag	chr9:139702745-139703030(+)$1	285	59	64	14.9999
GGGAG	chr15:68502380-68502648(-)$1	268	30	35	14.9999
GGGAG	chr8:144887770-144888029(-)$1	259	239	244	14.9999
GGGAG	chr12:6976624-6976927(+)$1	303	173	178	14.9999
GGGAG	chr12:7037002-7037297(+)$1	295	62	67	14.9999
GGGAG	chr1:109419872-109420149(+)$1	277	27	32	14.9999
GGGAG	chr9:139721657-139721889(+)$1	232	68	73	14.9999
GGGAG	chr17:79668825-79669073(+)$1	248	40	45	14.9999
GGGAG	chr22:42229147-42229413(+)$1	266	201	206	14.9999
gggag	chr9:100819045-100819303(+)$1	258	215	220	14.9999
GGGAG	chr1:53738054-53738351(-)$1	297	247	252	14.9999
GGGAG	chr7:22862255-22862561(-)$1	306	214	219	14.9999
GGGAG	chr22:50609898-50610193(+)$1	295	72	77	14.9999
GGGAG	chr13:92002503-92002721(+)$1	218	78	83	14.9999
GGGAG	chr11:57075941-57076179(-)$1	238	82	87	14.9999
GGGAG	chr4:177241080-177241340(+)$1	260	75	80	14.9999
GGGAG	chr11:66025344-66025620(+)$1	276	20	25	14.9999
gggag	chr21:46493853-46494136(+)$1	283	23	28	14.9999
gggag	chr7:127671029-127671309(+)$1	280	59	64	14.9999
GGGAG	chr22:22006491-22006837(+)$1	346	255	260	14.9999
GGGAG	chr9:136137126-136137353(-)$1	227	97	102	14.9999
gggag	chr7:1062063-1062306(-)$1	243	96	101	14.9999
GGGAG	chr11:504586-504866(-)$1	280	93	98	14.9999
GGGAG	chr7:6695665-6695998(+)$1	333	168	173	14.9999
GGGAG	chr16:1437638-1437888(-)$1	250	88	93	14.9999
GGGAG	chr1:227169411-227169687(+)$1	276	45	50	14.9999
GGGAG	chr17:56404323-56404583(-)$1	260	29	34	14.9999
GGGAG	chr22:50032836-50033110(-)$1	274	5	10	14.9999
GGGAG	chr1:44053394-44053690(+)$1	296	194	199	14.9999
GGGAG	chr19:1273222-1273465(+)$1	243	83	88	14.9999
GGGAG	chr8:96146498-96146781(+)$1	283	270	275	14.9999
GGGAG	chr16:89556193-89556442(-)$1	249	77	82	14.9999
GGGAG	chr15:25683206-25683456(-)$1	250	42	47	14.9999
GGGAG	chr6:53212663-53212921(-)$1	258	39	44	14.9999
GGGAG	chr9:96938188-96938402(+)$1	214	97	102	14.9999
GGGAG	chr2:132056945-132057202(+)$1	257	151	156	14.9999
GGGAG	chr17:57918353-57918626(+)$1	273	67	72	14.9999
GGGAG	chr17:80055457-80055706(-)$1	249	101	106	14.9999
gggag	chr19:18942684-18942938(+)$1	254	122	127	14.9999
GGGAG	chr21:38445730-38445973(+)$1	243	5	10	14.9999
GGGAG	chr22:20111033-20111274(+)$1	241	96	101	14.9999
GGGAG	chr11:819905-820275(+)$1	370	109	114	14.9999
GGGAG	chr22:22901348-22901571(-)$1	223	60	65	14.9999
GGGAG	chr9:140261362-140261710(-)$1	348	110	115	14.9999
GGGAG	chr11:64073603-64073832(+)$1	229	44	49	14.9999
GGGAG	chr6:3259118-3259396(+)$1	278	121	126	14.9999
GGGAG	chr16:447332-447571(+)$1	239	17	22	14.9999
GGGAG	chr9:114659346-114659567(+)$1	221	91	96	14.9999
GGGAG	chr19:52196951-52197198(+)$1	247	89	94	14.9999
GGGAG	chr19:41771260-41771493(+)$1	233	2	7	14.9999
GGGAG	chr19:1942567-1942839(+)$1	272	28	33	14.9999

#otherMatches

#Struct PSSM
CCNNN	chr17:56406010-56406220(-)$1	210	3	8	14.9999
KKEEE	chr10:80924753-80925001(+)$1	248	86	91	14.9999
eee[b	chr1:183441844-183442090(+)$1	246	31	36	14.9999
DD{CC	chr11:61583313-61583609(-)$1	296	66	71	14.9999
dd]cc	chr15:69110811-69111056(-)$1	245	36	41	14.9999
qqqbb	chr6:31696774-31697042(-)$1	268	85	90	14.9999
hhhhh	chr19:17354323-17354560(-)$1	237	198	203	14.9999
::ddd	chr22:49935292-49935529(-)$1	237	99	104	14.9999
dd!!a	chrX:53222225-53222482(-)$1	257	50	55	14.9999
}BBZZ	chr17:45918364-45918626(-)$1	262	249	254	14.9999
:::cc	chrX:152939733-152939987(-)$1	254	67	72	14.9999
ee]dd	chr2:132056444-132056710(+)$1	266	69	74	14.9999
:====	chr1:227153580-227153821(+)$1	241	3	8	14.9999
ddd:G	chr12:54730926-54731171(+)$1	245	187	192	14.9999
DDD{B	chr4:1238149-1238373(-)$1	224	39	44	14.9999
d::::	chr19:50168527-50168748(-)$1	221	36	41	14.9999
DDa[b	chr15:52121799-52122096(+)$1	297	25	30	14.9999
""ccc	chr7:106809591-106809918(+)$1	327	80	85	14.9999
JJJJJ	chr19:49605903-49606153(+)$1	250	98	103	14.9999
{HHHH	chr19:6745112-6745387(+)$1	275	58	63	14.9999
e[ddd	chr7:99690997-99691251(-)$1	254	88	93	14.9999
:::::	chr6:29600533-29600830(-)$1	297	47	52	14.9999
e]ddd	chr19:49661001-49661299(+)$1	298	73	78	14.9999
IIIII	chr22:32026228-32026554(-)$1	326	242	247	14.9999
ffnnn	chr9:139702745-139703030(+)$1	285	59	64	14.9999
[bbss	chr15:68502380-68502648(-)$1	268	30	35	14.9999
fffff	chr8:144887770-144888029(-)$1	259	239	244	14.9999
AGGGG	chr12:6976624-6976927(+)$1	303	173	178	14.9999
(((((	chr12:7037002-7037297(+)$1	295	62	67	14.9999
LEEEE	chr1:109419872-109420149(+)$1	277	27	32	14.9999
GGG:d	chr9:139721657-139721889(+)$1	232	68	73	14.9999
hhhhh	chr17:79668825-79669073(+)$1	248	40	45	14.9999
##bbm	chr22:42229147-42229413(+)$1	266	201	206	14.9999
ZZZBB	chr9:100819045-100819303(+)$1	258	215	220	14.9999
EEEE}	chr1:53738054-53738351(-)$1	297	247	252	14.9999
:ffff	chr7:22862255-22862561(-)$1	306	214	219	14.9999
ee[cc	chr22:50609898-50610193(+)$1	295	72	77	14.9999
JJJLL	chr13:92002503-92002721(+)$1	218	78	83	14.9999
!!a[b	chr11:57075941-57076179(-)$1	238	82	87	14.9999
nnnna	chr4:177241080-177241340(+)$1	260	75	80	14.9999
ii###	chr11:66025344-66025620(+)$1	276	20	25	14.9999
ppppp	chr21:46493853-46494136(+)$1	283	23	28	14.9999
===:B	chr7:127671029-127671309(+)$1	280	59	64	14.9999
cclll	chr22:22006491-22006837(+)$1	346	255	260	14.9999
CCC}G	chr9:136137126-136137353(-)$1	227	97	102	14.9999
fff[b	chr7:1062063-1062306(-)$1	243	96	101	14.9999
dddd"	chr11:504586-504866(-)$1	280	93	98	14.9999
fffff	chr7:6695665-6695998(+)$1	333	168	173	14.9999
gggmm	chr16:1437638-1437888(-)$1	250	88	93	14.9999
cccBB	chr1:227169411-227169687(+)$1	276	45	50	14.9999
ooobb	chr17:56404323-56404583(-)$1	260	29	34	14.9999
HHHH{	chr22:50032836-50033110(-)$1	274	5	10	14.9999
ee::c	chr1:44053394-44053690(+)$1	296	194	199	14.9999
ddddd	chr19:1273222-1273465(+)$1	243	83	88	14.9999
eee::	chr8:96146498-96146781(+)$1	283	270	275	14.9999
lllee	chr16:89556193-89556442(-)$1	249	77	82	14.9999
{CCCK	chr15:25683206-25683456(-)$1	250	42	47	14.9999
ddddo	chr6:53212663-53212921(-)$1	258	39	44	14.9999
ddd]c	chr9:96938188-96938402(+)$1	214	97	102	14.9999
ddd[a	chr2:132056945-132057202(+)$1	257	151	156	14.9999
iiiii	chr17:57918353-57918626(+)$1	273	67	72	14.9999
ggggg	chr17:80055457-80055706(-)$1	249	101	106	14.9999
hhhhh	chr19:18942684-18942938(+)$1	254	122	127	14.9999
A{CCC	chr21:38445730-38445973(+)$1	243	5	10	14.9999
lffff	chr22:20111033-20111274(+)$1	241	96	101	14.9999
mmma]	chr11:819905-820275(+)$1	370	109	114	14.9999
[eeee	chr22:22901348-22901571(-)$1	223	60	65	14.9999
eettt	chr9:140261362-140261710(-)$1	348	110	115	14.9999
cdddd	chr11:64073603-64073832(+)$1	229	44	49	14.9999
]ccc]	chr6:3259118-3259396(+)$1	278	121	126	14.9999
GGG::	chr16:447332-447571(+)$1	239	17	22	14.9999
mdddd	chr9:114659346-114659567(+)$1	221	91	96	14.9999
:::::	chr19:52196951-52197198(+)$1	247	89	94	14.9999
:::CC	chr19:41771260-41771493(+)$1	233	2	7	14.9999
b]fff	chr19:1942567-1942839(+)$1	272	28	33	14.9999

#DB
((...	chr17:56406010-56406220(-)$1	1	3	8	14.9999
..(((	chr10:80924753-80925001(+)$1	1	86	91	14.9999
(((.(	chr1:183441844-183442090(+)$1	1	31	36	14.9999
((.((	chr11:61583313-61583609(-)$1	1	66	71	14.9999
)).))	chr15:69110811-69111056(-)$1	1	36	41	14.9999
...))	chr6:31696774-31697042(-)$1	1	85	90	14.9999
)))))	chr19:17354323-17354560(-)$1	1	198	203	14.9999
..(((	chr22:49935292-49935529(-)$1	1	99	104	14.9999
((..(	chrX:53222225-53222482(-)$1	1	50	55	14.9999
.))..	chr17:45918364-45918626(-)$1	1	249	254	14.9999
...((	chrX:152939733-152939987(-)$1	1	67	72	14.9999
)).))	chr2:132056444-132056710(+)$1	1	69	74	14.9999
.((((	chr1:227153580-227153821(+)$1	1	3	8	14.9999
))).)	chr12:54730926-54731171(+)$1	1	187	192	14.9999
(((.(	chr4:1238149-1238373(-)$1	1	39	44	14.9999
)....	chr19:50168527-50168748(-)$1	1	36	41	14.9999
(((.(	chr15:52121799-52122096(+)$1	1	25	30	14.9999
..(((	chr7:106809591-106809918(+)$1	1	80	85	14.9999
(((((	chr19:49605903-49606153(+)$1	1	98	103	14.9999
.((((	chr19:6745112-6745387(+)$1	1	58	63	14.9999
(.(((	chr7:99690997-99691251(-)$1	1	88	93	14.9999
.....	chr6:29600533-29600830(-)$1	1	47	52	14.9999
).)))	chr19:49661001-49661299(+)$1	1	73	78	14.9999
)))))	chr22:32026228-32026554(-)$1	1	242	247	14.9999
((...	chr9:139702745-139703030(+)$1	1	59	64	14.9999
.((..	chr15:68502380-68502648(-)$1	1	30	35	14.9999
)))))	chr8:144887770-144888029(-)$1	1	239	244	14.9999
)))))	chr12:6976624-6976927(+)$1	1	173	178	14.9999
.....	chr12:7037002-7037297(+)$1	1	62	67	14.9999
.((((	chr1:109419872-109420149(+)$1	1	27	32	14.9999
(((.(	chr9:139721657-139721889(+)$1	1	68	73	14.9999
(((((	chr17:79668825-79669073(+)$1	1	40	45	14.9999
..((.	chr22:42229147-42229413(+)$1	1	201	206	14.9999
...))	chr9:100819045-100819303(+)$1	1	215	220	14.9999
)))).	chr1:53738054-53738351(-)$1	1	247	252	14.9999
.((((	chr7:22862255-22862561(-)$1	1	214	219	14.9999
((.((	chr22:50609898-50610193(+)$1	1	72	77	14.9999
(((..	chr13:92002503-92002721(+)$1	1	78	83	14.9999
..(.(	chr11:57075941-57076179(-)$1	1	82	87	14.9999
....)	chr4:177241080-177241340(+)$1	1	75	80	14.9999
((...	chr11:66025344-66025620(+)$1	1	20	25	14.9999
.....	chr21:46493853-46494136(+)$1	1	23	28	14.9999
))).(	chr7:127671029-127671309(+)$1	1	59	64	14.9999
((...	chr22:22006491-22006837(+)$1	1	255	260	14.9999
))).)	chr9:136137126-136137353(-)$1	1	97	102	14.9999
(((.(	chr7:1062063-1062306(-)$1	1	96	101	14.9999
((((.	chr11:504586-504866(-)$1	1	93	98	14.9999
(((((	chr7:6695665-6695998(+)$1	1	168	173	14.9999
(((..	chr16:1437638-1437888(-)$1	1	88	93	14.9999
)))))	chr1:227169411-227169687(+)$1	1	45	50	14.9999
...))	chr17:56404323-56404583(-)$1	1	29	34	14.9999
((((.	chr22:50032836-50033110(-)$1	1	5	10	14.9999
))..(	chr1:44053394-44053690(+)$1	1	194	199	14.9999
)))))	chr19:1273222-1273465(+)$1	1	83	88	14.9999
)))..	chr8:96146498-96146781(+)$1	1	270	275	14.9999
...))	chr16:89556193-89556442(-)$1	1	77	82	14.9999
.(((.	chr15:25683206-25683456(-)$1	1	42	47	14.9999
((((.	chr6:53212663-53212921(-)$1	1	39	44	14.9999
))).)	chr9:96938188-96938402(+)$1	1	97	102	14.9999
(((.(	chr2:132056945-132057202(+)$1	1	151	156	14.9999
(((((	chr17:57918353-57918626(+)$1	1	67	72	14.9999
)))))	chr17:80055457-80055706(-)$1	1	101	106	14.9999
)))))	chr19:18942684-18942938(+)$1	1	122	127	14.9999
(.(((	chr21:38445730-38445973(+)$1	1	5	10	14.9999
.))))	chr22:20111033-20111274(+)$1	1	96	101	14.9999
...).	chr11:819905-820275(+)$1	1	109	114	14.9999
.((((	chr22:22901348-22901571(-)$1	1	60	65	14.9999
((...	chr9:140261362-140261710(-)$1	1	110	115	14.9999
(((((	chr11:64073603-64073832(+)$1	1	44	49	14.9999
.))).	chr6:3259118-3259396(+)$1	1	121	126	14.9999
(((..	chr16:447332-447571(+)$1	1	17	22	14.9999
.))))	chr9:114659346-114659567(+)$1	1	91	96	14.9999
.....	chr19:52196951-52197198(+)$1	1	89	94	14.9999
...((	chr19:41771260-41771493(+)$1	1	2	7	14.9999
).)))	chr19:1942567-1942839(+)$1	1	28	33	14.9999

#PSSM
G : 0.90	g : 0.09	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
A : 0.89	a : 0.10	
G : 0.89	g : 0.10	

#score	1124.9999999999995
#seq	75
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_transcript_m2_run2.nuc.txt

#NT
GGCUG	chr19:2194792-2195007(+)$1	215	88	93	14.9999
GGCUG	chr19:827594-827917(+)$1	323	98	103	14.9999
GGCUG	chr16:50315485-50315739(+)$1	254	153	158	14.9999
GGCUG	chr11:820216-820521(+)$1	305	85	90	14.9999
GGCUG	chr11:1998656-1998908(+)$1	252	133	138	14.9999
GGCUG	chr9:137306540-137306802(+)$1	262	102	107	14.9999
GGCUG	chr22:19841485-19841808(-)$1	323	237	242	14.9999
GGCUG	chr16:88839031-88839286(-)$1	255	36	41	14.9999
GGCUG	chr4:1236834-1237077(-)$1	243	116	121	14.9999
GGCUG	chr16:2055577-2055819(-)$1	242	97	102	14.9999
GGCUG	chr22:49885189-49885433(-)$1	244	178	183	14.9999
GGCUG	chr9:137224067-137224322(+)$1	255	209	214	14.9999
GGCUG	chr19:46699395-46699652(-)$1	257	83	88	14.9999
GGCUG	chr19:2208162-2208468(+)$1	306	82	87	14.9999
GGCUG	chr16:1868104-1868360(-)$1	256	37	42	14.9999
GGCUG	chr7:928645-928923(+)$1	278	141	146	14.9999
GGCUG	chr8:141637012-141637275(-)$1	263	226	231	14.9999
GGCUG	chr16:1407067-1407352(+)$1	285	24	29	14.9999
GGCUG	chr1:2201596-2201910(+)$1	314	72	77	14.9999
GGCUG	chr14:105336401-105336671(+)$1	270	12	17	14.9999
ggcug	chr7:2147180-2147419(-)$1	239	161	166	14.9999
GGCUG	chr22:43410470-43410747(-)$1	277	223	228	14.9999
GGCUG	chr21:46851750-46852000(+)$1	250	101	106	14.9999
GGCUG	chr12:133075244-133075521(+)$1	277	69	74	14.9999
GGCUG	chr7:128046168-128046431(-)$1	263	37	42	14.9999
GGCUG	chr6:160491750-160492036(+)$1	286	262	267	14.9999
GGCUG	chr1:207818847-207819115(+)$1	268	68	73	14.9999
GGCUG	chr19:1942206-1942459(+)$1	253	104	109	14.9999
GGCUG	chr19:1644298-1644555(-)$1	257	108	113	14.9999
GGCUG	chr14:105195327-105195584(+)$1	257	86	91	14.9999
GGCUG	chr21:45734378-45734691(+)$1	313	8	13	14.9999
GGCUG	chr1:55506303-55506567(+)$1	264	183	188	14.9999
GGCUG	chr16:589791-590042(+)$1	251	193	198	14.9999
GGCUG	chr19:5067558-5067842(+)$1	284	180	185	14.9999
ggcug	chr19:1910043-1910288(+)$1	245	109	114	14.9999
GGCUG	chr16:89368231-89368523(-)$1	292	165	170	14.9999
GGCUG	chr9:137221151-137221421(+)$1	270	1	6	14.9999
GGCUG	chr22:37957550-37957831(+)$1	281	194	199	14.9999
GGCUG	chr19:2187295-2187604(+)$1	309	112	117	14.9999
GGCUG	chr9:140506940-140507201(+)$1	261	89	94	14.9999
GGCUG	chr11:432018-432303(-)$1	285	122	127	14.9999
GGCUG	chr19:5102399-5102654(+)$1	255	140	145	14.9999
GGCUG	chr3:195635821-195636075(-)$1	254	22	27	14.9999
GGCUG	chr7:139404536-139404858(-)$1	322	182	187	14.9999
GGCUG	chr11:67037048-67037301(+)$1	253	130	135	14.9999
GGCUG	chr22:49983400-49983632(-)$1	232	4	9	14.9999
GGCUG	chr11:1995631-1995880(+)$1	249	94	99	14.9999
GGCUG	chr20:62331470-62331728(-)$1	258	137	142	14.9999
GGCUG	chr16:1405483-1405754(+)$1	271	0	5	14.9999
GGCUG	chr1:31353958-31354213(-)$1	255	171	176	14.9999
GGCUG	chr10:135272129-135272450(+)$1	321	201	206	14.9999
GGCUG	chr17:80223789-80224119(-)$1	330	94	99	14.9999
GGCUG	chr19:40790501-40790796(-)$1	295	73	78	14.9999
GGCUG	chr2:132044608-132044890(+)$1	282	30	35	14.9999
ggcUG	chr4:712984-713245(+)$1	261	53	58	14.9999
GGCUG	chr12:133101050-133101302(+)$1	252	29	34	14.9999
GGCUG	chr16:88962988-88963310(-)$1	322	69	74	14.9999
GGCUG	chr20:35489171-35489430(-)$1	259	96	101	14.9999
GGCUG	chr1:154976811-154977056(+)$1	245	47	52	14.9999
GGCUG	chr1:2164017-2164299(+)$1	282	23	28	14.9999
GGCUG	chr16:85657778-85658018(+)$1	240	221	226	14.9999
GGCUG	chr14:105256217-105256498(-)$1	281	26	31	14.9999
GGCUG	chr16:88545451-88545694(+)$1	243	64	69	14.9999
ggcug	chr21:46368705-46368963(+)$1	258	25	30	14.9999
GGCUG	chr20:60933810-60934082(-)$1	272	8	13	14.9999
GGCUG	chr21:46864489-46864743(+)$1	254	84	89	14.9999
GGCUG	chr22:49994198-49994407(-)$1	209	68	73	14.9999
GGCUG	chr22:20120435-20120724(+)$1	289	116	121	14.9999
GGCUG	chr19:947051-947324(+)$1	273	202	207	14.9999
GGCUG	chr16:2662102-2662368(+)$1	266	194	199	14.9999
GGCUG	chr22:49883554-49883843(-)$1	289	52	57	14.9999
GGCUG	chr11:897322-897622(-)$1	300	63	68	14.9999
GGCUG	chr16:88557900-88558185(+)$1	285	192	197	14.9999
ggcug	chr21:45340505-45340767(+)$1	262	78	83	14.9999
GGCUG	chr8:143462405-143462660(-)$1	255	16	21	14.9999
GGCUG	chr19:2047530-2047812(-)$1	282	194	199	14.9999
GGCUG	chr17:3865829-3866087(-)$1	258	222	227	14.9999

#otherMatches

#Struct PSSM
eeeee	chr19:5114959-5115269(+)$1	310	199	204	14.9999
gggg=	chr19:2194792-2195007(+)$1	215	88	93	14.9999
]ccc2	chr19:827594-827917(+)$1	323	98	103	14.9999
:eeee	chr16:50315485-50315739(+)$1	254	153	158	14.9999
ffff[	chr11:820216-820521(+)$1	305	85	90	14.9999
IIII:	chr11:1998656-1998908(+)$1	252	133	138	14.9999
cffff	chr9:137306540-137306802(+)$1	262	102	107	14.9999
nnnnd	chr22:19841485-19841808(-)$1	323	237	242	14.9999
DDDBB	chr16:88839031-88839286(-)$1	255	36	41	14.9999
cccmm	chr4:1236834-1237077(-)$1	243	116	121	14.9999
DDDD{	chr16:2055577-2055819(-)$1	242	97	102	14.9999
]ccc]	chr22:49885189-49885433(-)$1	244	178	183	14.9999
gg22d	chr9:137224067-137224322(+)$1	255	209	214	14.9999
mffff	chr19:46699395-46699652(-)$1	257	83	88	14.9999
ggggg	chr19:2208162-2208468(+)$1	306	82	87	14.9999
dddd#	chr16:1868104-1868360(-)$1	256	37	42	14.9999
c!!ee	chr7:928645-928923(+)$1	278	141	146	14.9999
mbbff	chr8:141637012-141637275(-)$1	263	226	231	14.9999
!eeee	chr16:1407067-1407352(+)$1	285	24	29	14.9999
FFFFF	chr1:2201596-2201910(+)$1	314	72	77	14.9999
DDDDD	chr14:105336401-105336671(+)$1	270	12	17	14.9999
dddd[	chr7:2147180-2147419(-)$1	239	161	166	14.9999
]ccc:	chr22:43410470-43410747(-)$1	277	223	228	14.9999
}CCC}	chr21:46851750-46852000(+)$1	250	101	106	14.9999
hhfff	chr12:133075244-133075521(+)$1	277	69	74	14.9999
I:eee	chr7:128046168-128046431(-)$1	263	37	42	14.9999
IIIII	chr6:160491750-160492036(+)$1	286	262	267	14.9999
fff[c	chr1:207818847-207819115(+)$1	268	68	73	14.9999
dd22g	chr19:1942206-1942459(+)$1	253	104	109	14.9999
eeeee	chr19:1644298-1644555(-)$1	257	108	113	14.9999
]ccc3	chr14:105195327-105195584(+)$1	257	86	91	14.9999
!!ddd	chr21:45734378-45734691(+)$1	313	8	13	14.9999
eeeee	chr1:55506303-55506567(+)$1	264	183	188	14.9999
DDDD}	chr16:589791-590042(+)$1	251	193	198	14.9999
ggggg	chr19:5067558-5067842(+)$1	284	180	185	14.9999
4444f	chr19:1910043-1910288(+)$1	245	109	114	14.9999
[dddd	chr16:89368231-89368523(-)$1	292	165	170	14.9999
DDDD{	chr9:137221151-137221421(+)$1	270	1	6	14.9999
ffbb]	chr22:37957550-37957831(+)$1	281	194	199	14.9999
III}E	chr19:2187295-2187604(+)$1	309	112	117	14.9999
4cccd	chr9:140506940-140507201(+)$1	261	89	94	14.9999
bbeee	chr11:432018-432303(-)$1	285	122	127	14.9999
qqqqq	chr19:5102399-5102654(+)$1	255	140	145	14.9999
ffff"	chr3:195635821-195636075(-)$1	254	22	27	14.9999
bb]cc	chr7:139404536-139404858(-)$1	322	182	187	14.9999
JJJJJ	chr11:67037048-67037301(+)$1	253	130	135	14.9999
emmmm	chr22:49983400-49983632(-)$1	232	4	9	14.9999
hhhhh	chr11:1995631-1995880(+)$1	249	94	99	14.9999
bbbb!	chr20:62331470-62331728(-)$1	258	137	142	14.9999
::::d	chr16:1405483-1405754(+)$1	271	0	5	14.9999
eeeee	chr1:31353958-31354213(-)$1	255	171	176	14.9999
::bb[	chr10:135272129-135272450(+)$1	321	201	206	14.9999
cnnnn	chr17:80223789-80224119(-)$1	330	94	99	14.9999
ccc]b	chr19:40790501-40790796(-)$1	295	73	78	14.9999
heeee	chr2:132044608-132044890(+)$1	282	30	35	14.9999
fffff	chr4:712984-713245(+)$1	261	53	58	14.9999
e[ddd	chr12:133101050-133101302(+)$1	252	29	34	14.9999
IIIII	chr16:88962988-88963310(-)$1	322	69	74	14.9999
mmddd	chr20:35489171-35489430(-)$1	259	96	101	14.9999
d!!dd	chr1:154976811-154977056(+)$1	245	47	52	14.9999
ddddm	chr1:2164017-2164299(+)$1	282	23	28	14.9999
dccc]	chr16:85657778-85658018(+)$1	240	221	226	14.9999
a[bb!	chr14:105256217-105256498(-)$1	281	26	31	14.9999
!!ann	chr16:88545451-88545694(+)$1	243	64	69	14.9999
eeeee	chr21:46368705-46368963(+)$1	258	25	30	14.9999
{CCCK	chr20:60933810-60934082(-)$1	272	8	13	14.9999
f"""c	chr21:46864489-46864743(+)$1	254	84	89	14.9999
ddd[a	chr22:49994198-49994407(-)$1	209	68	73	14.9999
llggg	chr22:20120435-20120724(+)$1	289	116	121	14.9999
edddd	chr19:947051-947324(+)$1	273	202	207	14.9999
=====	chr16:2662102-2662368(+)$1	266	194	199	14.9999
bbfff	chr22:49883554-49883843(-)$1	289	52	57	14.9999
nnnnn	chr11:897322-897622(-)$1	300	63	68	14.9999
ii[bb	chr16:88557900-88558185(+)$1	285	192	197	14.9999
lllcc	chr21:45340505-45340767(+)$1	262	78	83	14.9999
ffff]	chr8:143462405-143462660(-)$1	255	16	21	14.9999
ddd[b	chr19:2047530-2047812(-)$1	282	194	199	14.9999
JJJJJ	chr17:3865829-3866087(-)$1	258	222	227	14.9999

#DB
)((((	chr19:5114959-5115269(+)$1	1	199	204	14.9999
)))))	chr19:2194792-2195007(+)$1	1	88	93	14.9999
.))).	chr19:827594-827917(+)$1	1	98	103	14.9999
.((((	chr16:50315485-50315739(+)$1	1	153	158	14.9999
((((.	chr11:820216-820521(+)$1	1	85	90	14.9999
)))).	chr11:1998656-1998908(+)$1	1	133	138	14.9999
)))))	chr9:137306540-137306802(+)$1	1	102	107	14.9999
....)	chr22:19841485-19841808(-)$1	1	237	242	14.9999
(((((	chr16:88839031-88839286(-)$1	1	36	41	14.9999
(((..	chr4:1236834-1237077(-)$1	1	116	121	14.9999
((((.	chr16:2055577-2055819(-)$1	1	97	102	14.9999
.))).	chr22:49885189-49885433(-)$1	1	178	183	14.9999
))..)	chr9:137224067-137224322(+)$1	1	209	214	14.9999
.))))	chr19:46699395-46699652(-)$1	1	83	88	14.9999
)))))	chr19:2208162-2208468(+)$1	1	82	87	14.9999
((((.	chr16:1868104-1868360(-)$1	1	37	42	14.9999
(..((	chr7:928645-928923(+)$1	1	141	146	14.9999
.))))	chr8:141637012-141637275(-)$1	1	226	231	14.9999
.((((	chr16:1407067-1407352(+)$1	1	24	29	14.9999
(((((	chr1:2201596-2201910(+)$1	1	72	77	14.9999
(((((	chr14:105336401-105336671(+)$1	1	12	17	14.9999
((((.	chr7:2147180-2147419(-)$1	1	161	166	14.9999
.))).	chr22:43410470-43410747(-)$1	1	223	228	14.9999
.))).	chr21:46851750-46852000(+)$1	1	101	106	14.9999
)))))	chr12:133075244-133075521(+)$1	1	69	74	14.9999
(.(((	chr7:128046168-128046431(-)$1	1	37	42	14.9999
)))))	chr6:160491750-160492036(+)$1	1	262	267	14.9999
(((.(	chr1:207818847-207819115(+)$1	1	68	73	14.9999
))..)	chr19:1942206-1942459(+)$1	1	104	109	14.9999
(((((	chr19:1644298-1644555(-)$1	1	108	113	14.9999
.))).	chr14:105195327-105195584(+)$1	1	86	91	14.9999
..(((	chr21:45734378-45734691(+)$1	1	8	13	14.9999
)))))	chr1:55506303-55506567(+)$1	1	183	188	14.9999
)))).	chr16:589791-590042(+)$1	1	193	198	14.9999
(((((	chr19:5067558-5067842(+)$1	1	180	185	14.9999
....)	chr19:1910043-1910288(+)$1	1	109	114	14.9999
.((((	chr16:89368231-89368523(-)$1	1	165	170	14.9999
((((.	chr9:137221151-137221421(+)$1	1	1	6	14.9999
)))).	chr22:37957550-37957831(+)$1	1	194	199	14.9999
))).)	chr19:2187295-2187604(+)$1	1	112	117	14.9999
.))))	chr9:140506940-140507201(+)$1	1	89	94	14.9999
(((((	chr11:432018-432303(-)$1	1	122	127	14.9999
.....	chr19:5102399-5102654(+)$1	1	140	145	14.9999
((((.	chr3:195635821-195636075(-)$1	1	22	27	14.9999
)).))	chr7:139404536-139404858(-)$1	1	182	187	14.9999
(((((	chr11:67037048-67037301(+)$1	1	130	135	14.9999
(....	chr22:49983400-49983632(-)$1	1	4	9	14.9999
)))))	chr11:1995631-1995880(+)$1	1	94	99	14.9999
((((.	chr20:62331470-62331728(-)$1	1	137	142	14.9999
....(	chr16:1405483-1405754(+)$1	1	0	5	14.9999
)))))	chr1:31353958-31354213(-)$1	1	171	176	14.9999
..((.	chr10:135272129-135272450(+)$1	1	201	206	14.9999
(....	chr17:80223789-80224119(-)$1	1	94	99	14.9999
))).)	chr19:40790501-40790796(-)$1	1	73	78	14.9999
(((((	chr2:132044608-132044890(+)$1	1	30	35	14.9999
(((((	chr4:712984-713245(+)$1	1	53	58	14.9999
(.(((	chr12:133101050-133101302(+)$1	1	29	34	14.9999
(((((	chr16:88962988-88963310(-)$1	1	69	74	14.9999
..)))	chr20:35489171-35489430(-)$1	1	96	101	14.9999
(..((	chr1:154976811-154977056(+)$1	1	47	52	14.9999
((((.	chr1:2164017-2164299(+)$1	1	23	28	14.9999
)))).	chr16:85657778-85658018(+)$1	1	221	226	14.9999
(.((.	chr14:105256217-105256498(-)$1	1	26	31	14.9999
..(..	chr16:88545451-88545694(+)$1	1	64	69	14.9999
(((((	chr21:46368705-46368963(+)$1	1	25	30	14.9999
.(((.	chr20:60933810-60934082(-)$1	1	8	13	14.9999
(...(	chr21:46864489-46864743(+)$1	1	84	89	14.9999
(((.(	chr22:49994198-49994407(-)$1	1	68	73	14.9999
..)))	chr22:20120435-20120724(+)$1	1	116	121	14.9999
(((((	chr19:947051-947324(+)$1	1	202	207	14.9999
)))))	chr16:2662102-2662368(+)$1	1	194	199	14.9999
)))))	chr22:49883554-49883843(-)$1	1	52	57	14.9999
.....	chr11:897322-897622(-)$1	1	63	68	14.9999
((.((	chr16:88557900-88558185(+)$1	1	192	197	14.9999
...))	chr21:45340505-45340767(+)$1	1	78	83	14.9999
)))).	chr8:143462405-143462660(-)$1	1	16	21	14.9999
(((.(	chr19:2047530-2047812(-)$1	1	194	199	14.9999
)))))	chr17:3865829-3866087(-)$1	1	222	227	14.9999

#PSSM
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
C : 0.93	c : 0.06	
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	

#score	1169.9999999999995
#seq	78
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_transcript_m3_run1.nuc.txt

#NT
GGGUGG	chr12:133138841-133139146(+)$1	305	63	69	18.0000
GGGUGG	chr17:19247509-19247798(-)$1	289	195	201	18.0000
GGGUGG	chr2:219267410-219267670(+)$1	260	178	184	18.0000
GGGUGG	chr17:46114592-46114892(-)$1	300	92	98	18.0000
gggugg	chr10:725444-725716(-)$1	272	196	202	18.0000
GGGUGG	chr14:105813542-105813824(+)$1	282	184	190	18.0000
GGGUGG	chr14:105994415-105994674(+)$1	259	135	141	18.0000
GGGUGG	chr16:2319580-2319875(+)$1	295	90	96	18.0000
gggugg	chr2:10476281-10476499(+)$1	218	120	126	18.0000
GGGUGG	chr2:219266397-219266629(+)$1	232	160	166	18.0000
GGGUGG	chr6:43028068-43028421(+)$1	353	101	107	18.0000
GGGUGG	chr11:567711-567966(-)$1	255	3	9	18.0000
GGGUGG	chr11:2156177-2156416(-)$1	239	30	36	18.0000
gggugg	chr17:77812528-77812778(-)$1	250	46	52	18.0000
GGGUGG	chr2:219266429-219266687(+)$1	258	128	134	18.0000
GGGUGG	chr2:240287064-240287321(-)$1	257	151	157	18.0000
GGGUGG	chr13:113764386-113764648(+)$1	262	185	191	18.0000
GGGUGG	chr16:2579518-2579772(+)$1	254	98	104	18.0000
gggugg	chr1:202776597-202776869(-)$1	272	80	86	18.0000
GGGUGG	chr1:33737200-33737463(+)$1	263	18	24	18.0000
GGGUGG	chr19:4066162-4066445(-)$1	283	93	99	18.0000
GGGUGG	chr17:79098854-79099138(-)$1	284	14	20	18.0000
GGGUGG	chr9:111808235-111808525(-)$1	290	80	86	18.0000
GGGUGG	chr17:57231851-57232227(-)$1	376	135	141	18.0000
gggugg	chr8:71314978-71315254(-)$1	276	0	6	18.0000
GGGUGG	chr17:7382142-7382410(-)$1	268	63	69	18.0000
GGGUGG	chr17:7476258-7476537(+)$1	279	34	40	18.0000
GGGUGG	chr19:1410775-1411040(+)$1	265	220	226	18.0000
GGGUGG	chr14:24904393-24904676(+)$1	283	271	277	18.0000
GGGUGG	chr19:13946792-13947088(-)$1	296	26	32	18.0000
GGGUGG	chr13:113761138-113761419(+)$1	281	176	182	18.0000
GGGUGG	chr13:113764531-113764804(+)$1	273	40	46	18.0000
gggugg	chr2:95825077-95825373(-)$1	296	3	9	18.0000
GGGUGG	chr1:1242726-1242986(-)$1	260	47	53	18.0000
GGGUGG	chr9:116971769-116972040(+)$1	271	110	116	18.0000
gggugg	chr7:64499220-64499503(+)$1	283	10	16	18.0000
GGGUGG	chr22:42298406-42298665(+)$1	259	225	231	18.0000
GGGUGG	chr16:50632812-50633062(+)$1	250	88	94	18.0000
GGGUGG	chr20:62667834-62668096(+)$1	262	142	148	18.0000
GGGUGG	chr2:231903156-231903399(+)$1	243	71	77	18.0000

#otherMatches

#Struct PSSM
ddddgg	chr18:55989822-55990115(+)$1	293	22	28	18.0000
[cccmm	chr12:133138841-133139146(+)$1	305	63	69	18.0000
iiiiii	chr17:19247509-19247798(-)$1	289	195	201	18.0000
ee[bbm	chr2:219267410-219267670(+)$1	260	178	184	18.0000
JJJJJJ	chr17:46114592-46114892(-)$1	300	92	98	18.0000
D}DDDD	chr10:725444-725716(-)$1	272	196	202	18.0000
cceeee	chr14:105813542-105813824(+)$1	282	184	190	18.0000
ccc[cc	chr14:105994415-105994674(+)$1	259	135	141	18.0000
IIIIff	chr16:2319580-2319875(+)$1	295	90	96	18.0000
bb]eee	chr2:10476281-10476499(+)$1	218	120	126	18.0000
eepppp	chr2:219266397-219266629(+)$1	232	160	166	18.0000
FFDDDD	chr6:43028068-43028421(+)$1	353	101	107	18.0000
gggggg	chr11:567711-567966(-)$1	255	3	9	18.0000
JJJJJ:	chr11:2156177-2156416(-)$1	239	30	36	18.0000
dddd::	chr17:77812528-77812778(-)$1	250	46	52	18.0000
ccc[bb	chr2:219266429-219266687(+)$1	258	128	134	18.0000
gggggg	chr2:240287064-240287321(-)$1	257	151	157	18.0000
::gggg	chr13:113764386-113764648(+)$1	262	185	191	18.0000
iiiii:	chr16:2579518-2579772(+)$1	254	98	104	18.0000
DDDA{F	chr1:202776597-202776869(-)$1	272	80	86	18.0000
oooooo	chr1:33737200-33737463(+)$1	263	18	24	18.0000
cccggg	chr19:4066162-4066445(-)$1	283	93	99	18.0000
gggggg	chr17:79098854-79099138(-)$1	284	14	20	18.0000
======	chr9:111808235-111808525(-)$1	290	80	86	18.0000
gggggg	chr17:57231851-57232227(-)$1	376	135	141	18.0000
DDDD{G	chr8:71314978-71315254(-)$1	276	0	6	18.0000
IIIIKK	chr17:7382142-7382410(-)$1	268	63	69	18.0000
]fffff	chr17:7476258-7476537(+)$1	279	34	40	18.0000
eeeee[	chr19:1410775-1411040(+)$1	265	220	226	18.0000
44bb::	chr14:24904393-24904676(+)$1	283	271	277	18.0000
ddddff	chr19:13946792-13947088(-)$1	296	26	32	18.0000
ddd[cc	chr13:113761138-113761419(+)$1	281	176	182	18.0000
GGGG{B	chr13:113764531-113764804(+)$1	273	40	46	18.0000
FFF{DD	chr2:95825077-95825373(-)$1	296	3	9	18.0000
nnnnna	chr1:1242726-1242986(-)$1	260	47	53	18.0000
eeeeee	chr9:116971769-116972040(+)$1	271	110	116	18.0000
JJJ:::	chr7:64499220-64499503(+)$1	283	10	16	18.0000
bb]ccc	chr22:42298406-42298665(+)$1	259	225	231	18.0000
:cccoo	chr16:50632812-50633062(+)$1	250	88	94	18.0000
======	chr20:62667834-62668096(+)$1	262	142	148	18.0000
C{CCCN	chr2:231903156-231903399(+)$1	243	71	77	18.0000

#DB
))))((	chr18:55989822-55990115(+)$1	1	22	28	18.0000
.(((..	chr12:133138841-133139146(+)$1	1	63	69	18.0000
))))))	chr17:19247509-19247798(-)$1	1	195	201	18.0000
((.((.	chr2:219267410-219267670(+)$1	1	178	184	18.0000
((((((	chr17:46114592-46114892(-)$1	1	92	98	18.0000
).))))	chr10:725444-725716(-)$1	1	196	202	18.0000
))))))	chr14:105813542-105813824(+)$1	1	184	190	18.0000
(((.((	chr14:105994415-105994674(+)$1	1	135	141	18.0000
((((((	chr16:2319580-2319875(+)$1	1	90	96	18.0000
)).)))	chr2:10476281-10476499(+)$1	1	120	126	18.0000
((....	chr2:219266397-219266629(+)$1	1	160	166	18.0000
((((((	chr6:43028068-43028421(+)$1	1	101	107	18.0000
((((((	chr11:567711-567966(-)$1	1	3	9	18.0000
(((((.	chr11:2156177-2156416(-)$1	1	30	36	18.0000
))))..	chr17:77812528-77812778(-)$1	1	46	52	18.0000
(((.((	chr2:219266429-219266687(+)$1	1	128	134	18.0000
))))))	chr2:240287064-240287321(-)$1	1	151	157	18.0000
..((((	chr13:113764386-113764648(+)$1	1	185	191	18.0000
))))).	chr16:2579518-2579772(+)$1	1	98	104	18.0000
((((.(	chr1:202776597-202776869(-)$1	1	80	86	18.0000
......	chr1:33737200-33737463(+)$1	1	18	24	18.0000
))))))	chr19:4066162-4066445(-)$1	1	93	99	18.0000
((((((	chr17:79098854-79099138(-)$1	1	14	20	18.0000
))))))	chr9:111808235-111808525(-)$1	1	80	86	18.0000
((((((	chr17:57231851-57232227(-)$1	1	135	141	18.0000
((((.(	chr8:71314978-71315254(-)$1	1	0	6	18.0000
((((..	chr17:7382142-7382410(-)$1	1	63	69	18.0000
.)))))	chr17:7476258-7476537(+)$1	1	34	40	18.0000
(((((.	chr19:1410775-1411040(+)$1	1	220	226	18.0000
..))..	chr14:24904393-24904676(+)$1	1	271	277	18.0000
))))))	chr19:13946792-13947088(-)$1	1	26	32	18.0000
(((.((	chr13:113761138-113761419(+)$1	1	176	182	18.0000
((((.(	chr13:113764531-113764804(+)$1	1	40	46	18.0000
(((.((	chr2:95825077-95825373(-)$1	1	3	9	18.0000
.....)	chr1:1242726-1242986(-)$1	1	47	53	18.0000
((((((	chr9:116971769-116972040(+)$1	1	110	116	18.0000
(((...	chr7:64499220-64499503(+)$1	1	10	16	18.0000
)).)))	chr22:42298406-42298665(+)$1	1	225	231	18.0000
.(((..	chr16:50632812-50633062(+)$1	1	88	94	18.0000
((((((	chr20:62667834-62668096(+)$1	1	142	148	18.0000
(.(((.	chr2:231903156-231903399(+)$1	1	71	77	18.0000

#PSSM
G : 0.82	g : 0.17	
G : 0.82	g : 0.17	
G : 0.82	g : 0.17	
U : 0.82	u : 0.17	
G : 0.82	g : 0.17	
G : 0.82	g : 0.17	

#score	738.0000000000001
#seq	41
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_transcript_m1_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
a[abboooooobb]a]a]a]ffffff22ccc]ccc4444iiiiiiiiiddddJJJJJJJJJJJJJ:::ddddqqqqqqqqdddd:eeeeennnnneeeee::::::::bbeeeee!!ffffffccc[dddd[dddd$$$$$ggggggglllgggggggdddddddd]ccc666666ffffff22eeeee]bb:::JJJJJJJJJJJJJ:::ddddmmmmdddd::::::	chrX:40551333-40551606(-)$1	273	39	268	687.0000

#DB
(.(((......)).).).).))))))..))).)))....)))))))))))))(((((((((((((...((((........)))).(((((.....)))))........(((((((..(((((((((.((((.((((.....(((((((...))))))))))))))).)))......))))))..))))).))...)))))))))))))...((((....))))......	chrX:40551333-40551606(-)$1	1	39	268	687.0000

#PSSM
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	

#score	687.0
#seq	1
#width	229
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_CDS_m2_run1.nuc.txt

#NT
CCCCCUUCCAAAC	chrM:13579-13785(+)$1	206	184	197	28.7916
CCCCCUUCCAAAC	chrM:13725-13959(+)$1	234	38	51	28.7916
CCCCCAUCCUUAC	chrM:12249-12482(+)$1	233	137	150	20.4583
CCCCCUUCCAAAC	chrM:13633-13841(+)$1	208	130	143	28.7916
CCCCCAUCCUUAC	chrM:12302-12530(+)$1	228	84	97	20.4583
CCCACCUCCAAAU	chrM:8587-8796(+)$1	209	33	46	20.8750
CCCACCUCCAAAU	chrM:8596-8798(+)$1	202	24	37	20.8750
CCCCCUUCCAAAC	chrM:13595-13803(+)$1	208	168	181	28.7916
CCCUUUUCCUAAC	chrM:7680-7895(+)$1	215	27	40	21.9166
CCCCCUAACAACC	chrM:10852-11063(+)$1	211	84	97	18.1666
UCCCCUUCCUAAC	chr7:103290661-103290921(-)$1	260	109	122	22.3333
CCCUUUUCCUAAC	chrM:7576-7832(+)$1	256	131	144	21.9166
CCCCCAUCCUUAC	chrM:12298-12502(+)$1	204	88	101	20.4583
CCCCCAUCCUUAC	chrM:12294-12498(+)$1	204	92	105	20.4583
CCCCCUAACAACC	chrM:10786-11002(+)$1	216	150	163	18.1666
CCCACCUCCAAAU	chrM:8556-8759(+)$1	203	64	77	20.8750
CCCCCUAACAACC	chrM:10873-11115(+)$1	242	63	76	18.1666
CCCUUUUCCUAAC	chrM:7674-7880(+)$1	206	33	46	21.9166
CCCUUUUCCUAAC	chrM:7695-7912(+)$1	217	12	25	21.9166
CCCUCUUCCGACC	chr12:53868815-53869054(+)$1	239	2	15	20.5625
CCCACCUCCAAAU	chrM:8578-8783(+)$1	205	42	55	20.8750
CCCCCAUCCUUAC	chrM:12288-12494(+)$1	206	98	111	20.4583
CCCACCUCCAAAU	chrM:8515-8756(+)$1	241	105	118	20.8750
CCCACCUCCAAAU	chrM:8601-8810(+)$1	209	19	32	20.8750
CCCCCAUCCUUAC	chrM:12282-12488(+)$1	206	104	117	20.4583
CCCCCUUCCAAAC	chrM:13644-13850(+)$1	206	119	132	28.7916
CCCCCUUCCAAAC	chrM:13590-13795(+)$1	205	173	186	28.7916
CCCCCUUCCAAAC	chrM:13617-13832(+)$1	215	146	159	28.7916
CCCACUCCUAAAC	chrM:9431-9644(+)$1	213	162	175	18.3750
CCCUUUUCCUAAC	chrM:7632-7836(+)$1	204	75	88	21.9166
CCCCCUUCCAAAC	chrM:13697-13907(+)$1	210	66	79	28.7916
CCCCCUAACAACC	chrM:10837-11051(+)$1	214	99	112	18.1666
CCCCCUUCCAAAC	chrM:13576-13779(+)$1	203	187	200	28.7916
CCCUCUUCCGACC	chr12:53868802-53869015(+)$1	213	15	28	20.5625
CCCCCUUCCAAAC	chrM:13585-13790(+)$1	205	178	191	28.7916
CCCUUUUCCUAAC	chrM:7669-7874(+)$1	205	38	51	21.9166
CCCACCUCCAAAU	chrM:8610-8813(+)$1	203	10	23	20.8750
CCCACCUCCAAAU	chrM:8613-8839(+)$1	226	7	20	20.8750
CCCUUUUCCUAAC	chrM:7636-7842(+)$1	206	71	84	21.9166
CCCCCUUCCAAAC	chrM:13610-13817(+)$1	207	153	166	28.7916
CCCCCUAACAACC	chrM:10934-11156(+)$1	222	2	15	18.1666
CCCUUUUCCUAAC	chrM:7650-7856(+)$1	206	57	70	21.9166
CCCCCUUCCAAAC	chrM:13604-13810(+)$1	206	159	172	28.7916
CCCACUCCUAAAC	chrM:9416-9631(+)$1	215	177	190	18.3750
CCCCCUUCCAAAC	chrM:13650-13862(+)$1	212	113	126	28.7916
CCCCCUUCCAAAC	chrM:13718-13925(+)$1	207	45	58	28.7916
CCCCCUAACAACC	chrM:10863-11072(+)$1	209	73	86	18.1666

#otherMatches

#Struct PSSM
:::::::::::::	chrM:13641-13844(+)$1	203	122	135	28.7916
:::::::::::::	chrM:13579-13785(+)$1	206	184	197	28.7916
:::::::::::::	chrM:13725-13959(+)$1	234	38	51	28.7916
:::::::::::::	chrM:12249-12482(+)$1	233	137	150	20.4583
:::::::::::::	chrM:13633-13841(+)$1	208	130	143	28.7916
:::::::::::::	chrM:12302-12530(+)$1	228	84	97	20.4583
:::::::::::::	chrM:8587-8796(+)$1	209	33	46	20.8750
:::::::::::::	chrM:8596-8798(+)$1	202	24	37	20.8750
:::::::::::::	chrM:13595-13803(+)$1	208	168	181	28.7916
^^^^^^^^^^^^^	chrM:7680-7895(+)$1	215	27	40	21.9166
:::::::::::::	chrM:10852-11063(+)$1	211	84	97	18.1666
dddccc:::::::	chr7:103290661-103290921(-)$1	260	109	122	22.3333
:::::::::::::	chrM:7576-7832(+)$1	256	131	144	21.9166
:::::::::::::	chrM:12298-12502(+)$1	204	88	101	20.4583
:::::::::::::	chrM:12294-12498(+)$1	204	92	105	20.4583
:::::::::::::	chrM:10786-11002(+)$1	216	150	163	18.1666
:::::::::::::	chrM:8556-8759(+)$1	203	64	77	20.8750
:::::::::::::	chrM:10873-11115(+)$1	242	63	76	18.1666
^^^^^^^^^^^^^	chrM:7674-7880(+)$1	206	33	46	21.9166
^^^^^^^^^^^^^	chrM:7695-7912(+)$1	217	12	25	21.9166
:::::::::::::	chr12:53868815-53869054(+)$1	239	2	15	20.5625
:::::::::::::	chrM:8578-8783(+)$1	205	42	55	20.8750
:::::::::::::	chrM:12288-12494(+)$1	206	98	111	20.4583
:::::::::::::	chrM:8515-8756(+)$1	241	105	118	20.8750
:::::::::::::	chrM:8601-8810(+)$1	209	19	32	20.8750
:::::::::::::	chrM:12282-12488(+)$1	206	104	117	20.4583
7777eeeee::::	chrM:13644-13850(+)$1	206	119	132	28.7916
:::::::::::::	chrM:13590-13795(+)$1	205	173	186	28.7916
:::::::::::::	chrM:13617-13832(+)$1	215	146	159	28.7916
BB:ffffff^^^^	chrM:9431-9644(+)$1	213	162	175	18.3750
^^^^^^^^^^^^^	chrM:7632-7836(+)$1	204	75	88	21.9166
7777eeeee::::	chrM:13697-13907(+)$1	210	66	79	28.7916
:::::::::::::	chrM:10837-11051(+)$1	214	99	112	18.1666
:::::::::::::	chrM:13576-13779(+)$1	203	187	200	28.7916
EEEE:::::cccb	chr12:53868802-53869015(+)$1	213	15	28	20.5625
:::::::::::::	chrM:13585-13790(+)$1	205	178	191	28.7916
^^^^^^^^^^^^^	chrM:7669-7874(+)$1	205	38	51	21.9166
:::::::::::::	chrM:8610-8813(+)$1	203	10	23	20.8750
:::::::::::::	chrM:8613-8839(+)$1	226	7	20	20.8750
^^^^^^^^^^^^^	chrM:7636-7842(+)$1	206	71	84	21.9166
:::::::::::::	chrM:13610-13817(+)$1	207	153	166	28.7916
:::::::::::::	chrM:10934-11156(+)$1	222	2	15	18.1666
^^^^^^^^^^^^^	chrM:7650-7856(+)$1	206	57	70	21.9166
:::::::::::::	chrM:13604-13810(+)$1	206	159	172	28.7916
lllccc]ccc:::	chrM:9416-9631(+)$1	215	177	190	18.3750
7777eeeee::::	chrM:13650-13862(+)$1	212	113	126	28.7916
:::::::::::::	chrM:13718-13925(+)$1	207	45	58	28.7916
:::::::::::::	chrM:10863-11072(+)$1	209	73	86	18.1666

#DB
.............	chrM:13641-13844(+)$1	1	122	135	28.7916
.............	chrM:13579-13785(+)$1	1	184	197	28.7916
.............	chrM:13725-13959(+)$1	1	38	51	28.7916
.............	chrM:12249-12482(+)$1	1	137	150	20.4583
.............	chrM:13633-13841(+)$1	1	130	143	28.7916
.............	chrM:12302-12530(+)$1	1	84	97	20.4583
.............	chrM:8587-8796(+)$1	1	33	46	20.8750
.............	chrM:8596-8798(+)$1	1	24	37	20.8750
.............	chrM:13595-13803(+)$1	1	168	181	28.7916
.............	chrM:7680-7895(+)$1	1	27	40	21.9166
.............	chrM:10852-11063(+)$1	1	84	97	18.1666
)))))).......	chr7:103290661-103290921(-)$1	1	109	122	22.3333
.............	chrM:7576-7832(+)$1	1	131	144	21.9166
.............	chrM:12298-12502(+)$1	1	88	101	20.4583
.............	chrM:12294-12498(+)$1	1	92	105	20.4583
.............	chrM:10786-11002(+)$1	1	150	163	18.1666
.............	chrM:8556-8759(+)$1	1	64	77	20.8750
.............	chrM:10873-11115(+)$1	1	63	76	18.1666
.............	chrM:7674-7880(+)$1	1	33	46	21.9166
.............	chrM:7695-7912(+)$1	1	12	25	21.9166
.............	chr12:53868815-53869054(+)$1	1	2	15	20.5625
.............	chrM:8578-8783(+)$1	1	42	55	20.8750
.............	chrM:12288-12494(+)$1	1	98	111	20.4583
.............	chrM:8515-8756(+)$1	1	105	118	20.8750
.............	chrM:8601-8810(+)$1	1	19	32	20.8750
.............	chrM:12282-12488(+)$1	1	104	117	20.4583
....)))))....	chrM:13644-13850(+)$1	1	119	132	28.7916
.............	chrM:13590-13795(+)$1	1	173	186	28.7916
.............	chrM:13617-13832(+)$1	1	146	159	28.7916
)).((((((....	chrM:9431-9644(+)$1	1	162	175	18.3750
.............	chrM:7632-7836(+)$1	1	75	88	21.9166
....)))))....	chrM:13697-13907(+)$1	1	66	79	28.7916
.............	chrM:10837-11051(+)$1	1	99	112	18.1666
.............	chrM:13576-13779(+)$1	1	187	200	28.7916
((((.....((((	chr12:53868802-53869015(+)$1	1	15	28	20.5625
.............	chrM:13585-13790(+)$1	1	178	191	28.7916
.............	chrM:7669-7874(+)$1	1	38	51	21.9166
.............	chrM:8610-8813(+)$1	1	10	23	20.8750
.............	chrM:8613-8839(+)$1	1	7	20	20.8750
.............	chrM:7636-7842(+)$1	1	71	84	21.9166
.............	chrM:13610-13817(+)$1	1	153	166	28.7916
.............	chrM:10934-11156(+)$1	1	2	15	18.1666
.............	chrM:7650-7856(+)$1	1	57	70	21.9166
.............	chrM:13604-13810(+)$1	1	159	172	28.7916
...))).)))...	chrM:9416-9631(+)$1	1	177	190	18.3750
....)))))....	chrM:13650-13862(+)$1	1	113	126	28.7916
.............	chrM:13718-13925(+)$1	1	45	58	28.7916
.............	chrM:10863-11072(+)$1	1	73	86	18.1666

#PSSM
C : 0.97	U : 0.02	
C : 1.00	
C : 1.00	
C : 0.58	A : 0.20	U : 0.20	
C : 0.83	U : 0.16	
U : 0.70	C : 0.16	A : 0.12	
U : 0.83	A : 0.12	C : 0.04	
C : 0.87	A : 0.12	
C : 0.95	U : 0.04	
A : 0.64	U : 0.31	G : 0.04	
A : 0.87	U : 0.12	
A : 0.83	C : 0.16	
C : 0.83	U : 0.16	

#score	1106.1666666666667
#seq	48
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_transcript_m2_run2.nuc.txt

#NT
GAGCAGGAGGCUGACAAUGAGGUagacgaagaagagga	chr2:232576555-232576782(+)$1	227	59	97	33.6875
Caggaggaggagaacggggcugaggaggaagaagaaga	chr12:6879021-6879266(+)$1	245	62	100	37.6458
GACGAGGACGAUGACGAGGAGGAAUAUGGCAAGGAGGA	chr17:27001966-27002255(+)$1	289	54	92	34.2083
gaagaggagaggagacgggcagaagaagaaaagaggag	chr2:102472339-102472594(+)$1	255	207	245	21.1874
gaagaggaggaagaagaggaagaggaugaagaggagga	chr10:76781737-76782075(+)$1	338	123	161	57.1250
agugaggaugaaucagagacagaagaugaagaggagaa	chr6:52132559-52132808(-)$1	249	75	113	32.2291
gaagaagaagcagccaaagaagagaaagaagaaucuga	chr12:104332017-104332245(+)$1	228	127	165	31.8124
GAAGAGGAUGGUUCAGAGAUAGAGGCUGAUGACAAGGA	chr2:71360149-71360480(+)$1	331	134	172	28.6874
GAACAGAAAGAAGAAAACAAGGGAGGAGAAGACAAGCU	chr17:1268047-1268379(-)$1	332	161	199	22.7499
aaagaagacaaggaaaaggaggaggaggaagaggagaa	chr7:134617935-134618251(+)$1	316	137	175	40.4583
GUAGUggaagacgaggaggacgaggaugaggaggagga	chr15:69075193-69075486(-)$1	293	120	158	40.4583
gaagaagaugaagaugaugaagaagcagaagaggagga	chr1:235377094-235377443(-)$1	349	118	156	48.2708
gaaaaggaggaUAAUAGCAGUGAAGAAGAAGUAAGUGA	chr1:235392439-235392757(-)$1	318	182	220	23.8958
gaugaggaggaugacgaggacgaggaugaggaugaaga	chr2:232326205-232326434(-)$1	229	36	74	45.6666
GAUGAAGAAGAGACCAUGGAAAAUAAUGAAGAAAAGAA	chr6:136582294-136582597(-)$1	303	135	173	27.5416
GAAGAGAAACAGAAAAGUGAUGCUGAAGAAGAUGGUGG	chr5:179153580-179153802(+)$1	222	99	137	23.4791
gaugaggaugacgaagaugaugaggaugacgaugacga	chr2:232326153-232326382(-)$1	229	83	121	42.9583
gaagaagagcaaacacaagaagagcaaggacaaggagg	chr9:139734693-139734931(+)$1	238	100	138	24.5208
AAAGAAGAGCAAUAUAGGAAAGAAGUUGAAGUGAAACA	chr10:27326739-27327080(-)$1	341	176	214	23.4791
gaggaagacgaggacgaugaggauggugaagaagagga	chr9:100773452-100773712(+)$1	260	111	149	41.4999
AUUGAGGAUGAAGAUGAUGAAGCCGAGGUAGAAGAAGA	chr6:7310048-7310255(-)$1	207	52	90	32.8541
gaugaggaagaggaggaagaagaggaggaggaggagga	chr22:41650240-41650506(-)$1	266	81	119	47.6458
GGAGAGAAAGAAAAGCUCAAAGAAGAAGAAGCACAGGU	chr16:2808882-2809147(+)$1	265	130	168	24.1041
gaugaggaagacgaggacgaugaggauggugaagaaga	chr9:100773512-100773772(+)$1	260	48	86	40.6666
GCAGAAGAGGAGAGGAGGAUAGCAGCAGAAGAGAAGAA	chr4:666991-667273(-)$1	282	100	138	21.9166
GAGGAUGAAGAUGAUGAAGCCGAGGUAGAAGAAGAUGA	chr6:7310055-7310342(-)$1	287	142	180	37.5416
ACagaggaggaagaaggugggaaaggugaaaagaggaa	chr9:100777545-100777750(+)$1	205	96	134	24.7291
gaagaagaggaggaugaggaggaggaagaagaaCUGGA	chr17:4575285-4575630(-)$1	345	180	218	45.5625
GAAGAAGGACAAGAACUCUCAGAUGAAGAUGAUGAGGU	chr12:69229565-69229883(+)$1	318	163	201	24.4166
gaaaaagaagaaaaacgagaagaaCCCAUGGAAGAGGA	chr14:73577478-73577780(+)$1	302	141	179	24.4166
GAAGAUGAUGAAGACAGCGAUGACGAUGGAUCAGAUGA	chr2:230656765-230657049(-)$1	284	124	162	30.0416
gaaacugaggaagagcagccagacgaauaggaggaaaa	chr21:38456350-38456662(+)$1	312	177	215	24.2083
GAUGAGGCUgaagaaaaggaagacaaagaagaagaaaa	chr14:102551063-102551322(-)$1	259	20	58	39.9375
AAAAAGGAGaagcaagaaagagaagaaagagaaaaaga	chr17:48822985-48823268(+)$1	283	143	181	24.1041
gaugaggaggaugacgaggacgaggaugaggaugaaga	chr2:232326182-232326405(-)$1	223	7	45	45.6666
AAAGAGGAAGAAGAAAGACAGAAGAGAGAAGAGGAAGA	chr2:99980136-99980428(+)$1	292	105	143	33.4791
ACagaggaggaagaaggugggaaaggugaaaagaggaa	chr9:100777552-100777822(+)$1	270	89	127	24.7291
GAAGAGGAGGUAGAACGGGAAAUCAUUAAACAGGAAGA	chr12:6692402-6692645(-)$1	243	104	142	23.9999
gaagaagaagaaggacaaggagaaggagaaggagaagc	chr9:136905099-136905423(-)$1	324	118	156	32.3333
gaugaugaagaugaugaGGAGGAGGAAGAAGAGGAGGA	chr2:232325316-232325572(-)$1	256	150	188	48.7916
GCAGAGGAGAAGAAAGAUGAGAAGAAGGAGGAGUCUGA	chr11:812657-812912(+)$1	255	101	139	25.7708
gaugaugaugaugaugaagaggaggaaggauuagaaga	chr9:131456203-131456422(+)$1	219	10	48	34.4166
GAAGAAGAGCCUgaggacgaagaggaggaggaagagga	chr19:39943895-39944248(+)$1	353	139	177	40.7708
caagagcaaggacaagaggaagggcaggaagagaagca	chr1:29475128-29475473(-)$1	345	110	148	27.9583
ccagaggaugaagaagagaaaaagaagcaggaagagaa	chr14:102549316-102549614(-)$1	298	142	180	29.7291
gacgaagaugacgaggaggaggaggacgaugaugugga	chr6:168352699-168352968(+)$1	269	84	122	38.1666
gaagaggagaggagacgggcagaagaagaaaagaggag	chr2:102472394-102472702(+)$1	308	152	190	21.1874

#otherMatches

#Struct PSSM
22eeeee::::::::ccc[bb[hhhhhhhh####bb[b	chr2:232326150-232326353(-)$1	203	54	92	42.9583
3a]ccc22dddd22bb::::a[eeeee[ccc"""iiii	chr2:232576555-232576782(+)$1	227	59	97	33.6875
zzzzzzzzzzzzzzzffffff]ffffff::::::::::	chr12:6879021-6879266(+)$1	245	62	100	37.6458
dddd7777777eeeee]a22bb]bb333bb]ccc]bb:	chr17:27001966-27002255(+)$1	289	54	92	34.2083
::::::::::::::::::::::::::::::::::::::	chr2:102472339-102472594(+)$1	255	207	245	21.1874
FF:::::::::::::::bb!!a!!ccc"""a[bb[ccc	chr10:76781737-76782075(+)$1	338	123	161	57.1250
::cccpppppppccc:::::::::::::::::::::::	chr6:52132559-52132808(-)$1	249	75	113	32.2291
arrrrrrrrra22ccc:::GGGGGGG|||||||FFFFF	chr12:104332017-104332245(+)$1	228	127	165	31.8124
FFFF~~~~GGGGGGG:::::::::GGGGGGG{EEEEEC	chr2:71360149-71360480(+)$1	331	134	172	28.6874
^^^^^^^^^bb999999999ffffff88888888dddd	chr17:1268047-1268379(-)$1	332	161	199	22.7499
::::::::::::::::::::::::::::::::::::::	chr7:134617935-134618251(+)$1	316	137	175	40.4583
CC}DDDD::ccc[ccc[a!!bb[bb[bb!!dddd$$$$	chr15:69075193-69075486(-)$1	293	120	158	40.4583
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr1:235377094-235377443(-)$1	349	118	156	48.2708
FFFFZZZHHHHHHHH::::::::eeeee"""ccc[bbm	chr1:235392439-235392757(-)$1	318	182	220	23.8958
::::CCC{BB::::bbmmmmbb::::::::::::::::	chr2:232326205-232326434(-)$1	229	36	74	45.6666
F}DDDDFFFFFFGGGGGGG::::::bb[hhhhhhhh""	chr6:136582294-136582597(-)$1	303	135	173	27.5416
ffff22ffffff333eeeee]ccc88888888ffffff	chr5:179153580-179153802(+)$1	222	99	137	23.4791
22eeeee::::::::ccc[bb[hhhhhhhh####bb[b	chr2:232326153-232326382(-)$1	229	83	121	42.9583
uuuuuuuccc>>>>>>>>>>>ccc22bb]gggggggbb	chr9:139734693-139734931(+)$1	238	100	138	24.5208
::::::::::::::::DDDD{JJJJJJJJJJ:::::::	chr10:27326739-27327080(-)$1	341	176	214	23.4791
^^^^^^^^^^^^^^a22==========22eeeee]ccc	chr9:100773452-100773712(+)$1	260	111	149	41.4999
qqqqqcccbbeeeee22bb22ccc:::::DDDDKKGGG	chr6:7310048-7310255(-)$1	207	52	90	32.8541
:::::::::::::::::::::::::::a!!a!!ddddq	chr22:41650240-41650506(-)$1	266	81	119	47.6458
gggggg::::::GGGGGGG:=============+++++	chr16:2808882-2809147(+)$1	265	130	168	24.1041
^^^^^^^^^^^^^^^^^a22==========22eeeee]	chr9:100773512-100773772(+)$1	260	48	86	40.6666
cc]ccc666666==========333bb333dddd]a55	chr4:666991-667273(-)$1	282	100	138	21.9166
qqcccbbeeeee22bb22ccc:::::DDDDKKGGGGGG	chr6:7310055-7310342(-)$1	287	142	180	37.5416
ggggggg22bb333ccc22hhhhhhhh:::::::::::	chr9:100777545-100777750(+)$1	205	96	134	24.7291
VVVVVVVVEEEEEKKCCCKKEEEEE::a!!eeeee$$$	chr17:4575285-4575630(-)$1	345	180	218	45.5625
}DDDDJJJJJJJJJJ:ggggggg[a!!eeeee!!ccc[	chr12:69229565-69229883(+)$1	318	163	201	24.4166
::::::::::::::::::::::::::::ccc[ffffff	chr14:73577478-73577780(+)$1	302	141	179	24.4166
c]dddd22dddd22affffff::::DDDD::::::::E	chr2:230656765-230657049(-)$1	284	124	162	30.0416
44ccc22bbHHHHHHHH:bb"""annnnna22bb:::d	chr21:38456350-38456662(+)$1	312	177	215	24.2083
DDDD{DDDD:::::::::::::::::::::::::::::	chr14:102551063-102551322(-)$1	259	20	58	39.9375
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:48822985-48823268(+)$1	283	143	181	24.1041
CCCMMMMEEEEEKKEEEEEBBLLLCCC{DDDD::::::	chr2:232326182-232326405(-)$1	223	7	45	45.6666
5555ccc:::::DDDDKKEEEEELLLGGGGGGGEEEEE	chr2:99980136-99980428(+)$1	292	105	143	33.4791
ggggggg22bb333ccc22hhhhhhhh::::::::::c	chr9:100777552-100777822(+)$1	270	89	127	24.7291
e22dddd:eeeee!!eeeee!!ddddyyyyyyyyyyyy	chr12:6692402-6692645(-)$1	243	104	142	23.9999
::::::::BBYYCCC}FFFFFFYYBB}A:::::::::c	chr9:136905099-136905423(-)$1	324	118	156	32.3333
[bbpppppppbb]bb]a>>>>>>>>>>>>>>>a22a22	chr2:232325316-232325572(-)$1	256	150	188	48.7916
==========:BB{EEEEE{AGGGGGGG::::ffffff	chr11:812657-812912(+)$1	255	101	139	25.7708
:::::::::::::::::::::::::::BB{DDDD::::	chr9:131456203-131456422(+)$1	219	10	48	34.4166
4444ggggggg]cccCCCNNNNNAMMMMJJJJJJJJJJ	chr19:39943895-39944248(+)$1	353	139	177	40.7708
bmmmmbb::DDDDKKA{CCCKKBBCCC:::::::::::	chr1:29475128-29475473(-)$1	345	110	148	27.9583
eeee::::::::::::::::::::::::::EEEEE|||	chr14:102549316-102549614(-)$1	298	142	180	29.7291
b::::::BB{DDDDKKCCC{BB:DDDD{BBCCC::::b	chr6:168352699-168352968(+)$1	269	84	122	38.1666
::::::::::::::::::::::::::::::::::::::	chr2:102472394-102472702(+)$1	308	152	190	21.1874

#DB
..)))))........(((.((.((((((((....((.(	chr2:232326150-232326353(-)$1	1	54	92	42.9583
.).)))..))))..))....(.(((((.(((...((((	chr2:232576555-232576782(+)$1	1	59	97	33.6875
...............)))))).))))))..........	chr12:6879021-6879266(+)$1	1	62	100	37.6458
)))).......))))).)..)).))...)).))).)).	chr17:27001966-27002255(+)$1	1	54	92	34.2083
......................................	chr2:102472339-102472594(+)$1	1	207	245	21.1874
((...............((..(..(((...(.((.(((	chr10:76781737-76782075(+)$1	1	123	161	57.1250
..(((.......))).......................	chr6:52132559-52132808(-)$1	1	75	113	32.2291
(.........)..)))...))))))).......)))))	chr12:104332017-104332245(+)$1	1	127	165	31.8124
))))....))))))).........(((((((.((((((	chr2:71360149-71360480(+)$1	1	134	172	28.6874
.........)).........))))))........))))	chr17:1268047-1268379(-)$1	1	161	199	22.7499
......................................	chr7:134617935-134618251(+)$1	1	137	175	40.4583
)).))))..(((.(((.(..((.((.((..((((....	chr15:69075193-69075486(-)$1	1	120	158	40.4583
...................................)))	chr1:235377094-235377443(-)$1	1	118	156	48.2708
))))...))))))))........(((((...(((.((.	chr1:235392439-235392757(-)$1	1	182	220	23.8958
....(((.((....((....))................	chr2:232326205-232326434(-)$1	1	36	74	45.6666
).)))))))))))))))))......((.((((((((..	chr6:136582294-136582597(-)$1	1	135	173	27.5416
))))..))))))...))))).)))........))))))	chr5:179153580-179153802(+)$1	1	99	137	23.4791
..)))))........(((.((.((((((((....((.(	chr2:232326153-232326382(-)$1	1	83	121	42.9583
.......)))...........)))..)).)))))))))	chr9:139734693-139734931(+)$1	1	100	138	24.5208
................((((.((((((((((.......	chr10:27326739-27327080(-)$1	1	176	214	23.4791
..............)..))))))))))..))))).)))	chr9:100773452-100773712(+)$1	1	111	149	41.4999
.....))))))))))..))..))).....((((..(((	chr6:7310048-7310255(-)$1	1	52	90	32.8541
...........................(..(..((((.	chr22:41650240-41650506(-)$1	1	81	119	47.6458
))))))......))))))).(((((((((((((.....	chr16:2808882-2809147(+)$1	1	130	168	24.1041
.................)..))))))))))..))))).	chr9:100773512-100773772(+)$1	1	48	86	40.6666
)).)))......))))))))))...))...)))).)..	chr4:666991-667273(-)$1	1	100	138	21.9166
..))))))))))..))..))).....((((..((((((	chr6:7310055-7310342(-)$1	1	142	180	37.5416
)))))))..))...)))..))))))))...........	chr9:100777545-100777750(+)$1	1	96	134	24.7291
........(((((..(((..(((((..(..(((((...	chr17:4575285-4575630(-)$1	1	180	218	45.5625
.)))))))))))))).(((((((.(..(((((..(((.	chr12:69229565-69229883(+)$1	1	163	201	24.4166
............................(((.((((((	chr14:73577478-73577780(+)$1	1	141	179	24.4166
).))))..))))..)))))))....))))........(	chr2:230656765-230657049(-)$1	1	124	162	30.0416
..)))..))((((((((.((...(.....)..))...(	chr21:38456350-38456662(+)$1	1	177	215	24.2083
((((.((((.............................	chr14:102551063-102551322(-)$1	1	20	58	39.9375
......................................	chr17:48822985-48823268(+)$1	1	143	181	24.1041
(((....(((((..(((((((...(((.((((......	chr2:232326182-232326405(-)$1	1	7	45	45.6666
....))).....((((..(((((...((((((((((((	chr2:99980136-99980428(+)$1	1	105	143	33.4791
)))))))..))...)))..))))))))..........(	chr9:100777552-100777822(+)$1	1	89	127	24.7291
)..)))).(((((..(((((..((((............	chr12:6692402-6692645(-)$1	1	104	142	23.9999
........))..))).))))))..)).).........(	chr9:136905099-136905423(-)$1	1	118	156	32.3333
.((.......)).)).)...............)..)..	chr2:232325316-232325572(-)$1	1	150	188	48.7916
)))))))))).((.(((((.((((((((....((((((	chr11:812657-812912(+)$1	1	101	139	25.7708
...........................((.((((....	chr9:131456203-131456422(+)$1	1	10	48	34.4166
....))))))).)))(((.....(....((((((((((	chr19:39943895-39944248(+)$1	1	139	177	40.7708
(....))..((((..(.(((..(((((...........	chr1:29475128-29475473(-)$1	1	110	148	27.9583
))))..........................)))))...	chr14:102549316-102549614(-)$1	1	142	180	29.7291
)......((.((((..(((.((.((((.(((((....(	chr6:168352699-168352968(+)$1	1	84	122	38.1666
......................................	chr2:102472394-102472702(+)$1	1	152	190	21.1874

#PSSM
g : 0.43	G : 0.33	A : 0.12	a : 0.04	c : 0.04	C : 0.02	
a : 0.49	A : 0.31	C : 0.08	U : 0.04	g : 0.02	G : 0.02	c : 0.02	
a : 0.33	A : 0.29	u : 0.18	U : 0.06	G : 0.04	g : 0.04	C : 0.02	c : 0.02	
g : 0.52	G : 0.35	a : 0.06	C : 0.04	A : 0.02	
a : 0.56	A : 0.39	U : 0.02	c : 0.02	
g : 0.35	G : 0.25	a : 0.18	A : 0.10	u : 0.06	U : 0.04	
g : 0.58	G : 0.33	A : 0.06	c : 0.02	
a : 0.60	A : 0.35	G : 0.02	C : 0.02	
g : 0.25	a : 0.16	u : 0.14	G : 0.14	A : 0.14	U : 0.08	c : 0.04	C : 0.02	
g : 0.54	G : 0.25	a : 0.08	C : 0.08	c : 0.02	A : 0.02	
a : 0.56	A : 0.27	g : 0.06	C : 0.04	c : 0.02	G : 0.02	U : 0.02	
a : 0.27	g : 0.16	A : 0.16	U : 0.12	c : 0.10	u : 0.08	G : 0.08	
g : 0.47	G : 0.18	A : 0.12	a : 0.10	U : 0.04	c : 0.04	u : 0.02	
a : 0.52	A : 0.29	g : 0.06	c : 0.06	C : 0.04	G : 0.02	
a : 0.33	A : 0.14	g : 0.12	c : 0.10	C : 0.08	u : 0.08	U : 0.08	G : 0.04	
g : 0.45	A : 0.18	c : 0.12	G : 0.10	a : 0.06	C : 0.06	
a : 0.52	A : 0.14	G : 0.14	g : 0.12	U : 0.06	
g : 0.31	G : 0.14	a : 0.14	u : 0.12	C : 0.10	U : 0.08	c : 0.04	A : 0.04	
g : 0.54	G : 0.20	A : 0.12	a : 0.06	U : 0.02	c : 0.02	C : 0.02	
a : 0.43	A : 0.27	c : 0.10	g : 0.08	U : 0.04	C : 0.04	G : 0.02	
a : 0.33	A : 0.16	g : 0.14	G : 0.12	u : 0.08	c : 0.06	U : 0.06	C : 0.02	
g : 0.56	G : 0.29	A : 0.08	a : 0.06	
a : 0.60	A : 0.25	C : 0.06	U : 0.04	G : 0.02	g : 0.02	
g : 0.37	a : 0.20	A : 0.12	G : 0.10	U : 0.06	C : 0.06	c : 0.04	u : 0.02	
g : 0.52	G : 0.25	A : 0.08	a : 0.06	c : 0.04	U : 0.02	C : 0.02	
a : 0.52	A : 0.20	g : 0.08	C : 0.06	U : 0.06	G : 0.04	c : 0.02	
u : 0.22	a : 0.22	A : 0.18	g : 0.12	U : 0.12	c : 0.04	G : 0.04	C : 0.02	
g : 0.56	G : 0.33	A : 0.04	u : 0.02	a : 0.02	c : 0.02	
a : 0.54	A : 0.29	g : 0.08	G : 0.04	U : 0.04	
a : 0.39	A : 0.27	g : 0.14	c : 0.04	U : 0.04	u : 0.04	G : 0.04	C : 0.02	
g : 0.49	G : 0.31	a : 0.08	A : 0.02	c : 0.02	U : 0.02	C : 0.02	u : 0.02	
a : 0.58	A : 0.29	U : 0.04	C : 0.04	g : 0.02	u : 0.02	
a : 0.27	g : 0.25	G : 0.14	A : 0.14	u : 0.10	C : 0.04	U : 0.04	
g : 0.45	G : 0.20	a : 0.12	A : 0.12	C : 0.04	u : 0.02	U : 0.02	
a : 0.45	A : 0.31	g : 0.10	G : 0.04	c : 0.02	U : 0.02	C : 0.02	u : 0.02	
g : 0.33	a : 0.20	G : 0.20	U : 0.10	A : 0.08	c : 0.04	u : 0.02	
g : 0.39	G : 0.31	a : 0.18	C : 0.04	A : 0.04	c : 0.02	
a : 0.52	A : 0.31	g : 0.06	U : 0.06	G : 0.02	c : 0.02	

#score	1593.6666666666665
#seq	48
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_transcript_m2_run1.nuc.txt

#NT
GGG	chr11:65347451-65347707(+)$1	256	24	27	8.9999
GGG	chr5:138260870-138261115(+)$1	245	14	17	8.9999
GGG	chr8:144992936-144993197(-)$1	261	10	13	8.9999
GGG	chr21:33706411-33706654(-)$1	243	23	26	8.9999
GGG	chr1:19464516-19464749(-)$1	233	115	118	8.9999
GGG	chr21:34922690-34922996(+)$1	306	32	35	8.9999
GGG	chr14:65260195-65260437(-)$1	242	118	121	8.9999
GGG	chr1:220156567-220156787(-)$1	220	111	114	8.9999
GGG	chr22:21800359-21800600(+)$1	241	72	75	8.9999
GGG	chr12:6697408-6697662(-)$1	254	120	123	8.9999
ggg	chr14:102430807-102431065(+)$1	258	40	43	8.9999
GGG	chr17:1564299-1564537(-)$1	238	34	37	8.9999
GGG	chr17:40075044-40075302(-)$1	258	13	16	8.9999
GGG	chr18:18690883-18691187(-)$1	304	1	4	8.9999
GGG	chrX:153582937-153583170(-)$1	233	39	42	8.9999
GGG	chr1:19419771-19419985(-)$1	214	90	93	8.9999
GGG	chr11:65824246-65824526(+)$1	280	6	9	8.9999
GGG	chr2:74592619-74592884(-)$1	265	260	263	8.9999
GGG	chrX:47072328-47072590(+)$1	262	156	159	8.9999
GGG	chr10:71139680-71139933(+)$1	253	75	78	8.9999
GGG	chr19:14574577-14574872(+)$1	295	147	150	8.9999
GGG	chr21:47676679-47676954(-)$1	275	101	104	8.9999
GGG	chr19:47423559-47423803(+)$1	244	181	184	8.9999
GGG	chr10:71158333-71158609(+)$1	276	43	46	8.9999
ggg	chr7:150068905-150069156(+)$1	251	61	64	8.9999
GGG	chr17:1582553-1582797(-)$1	244	77	80	8.9999
GGG	chr7:72936175-72936460(-)$1	285	106	109	8.9999
GGG	chr14:102483392-102483623(+)$1	231	37	40	8.9999
GGG	chrX:53574886-53575142(-)$1	256	166	169	8.9999
ggg	chr6:31958156-31958358(+)$1	202	102	105	8.9999
GGG	chr8:144993070-144993311(-)$1	241	16	19	8.9999
GGG	chrX:53571971-53572221(-)$1	250	214	217	8.9999
GGG	chrX:153580152-153580385(-)$1	233	54	57	8.9999
GGG	chr19:46857058-46857342(+)$1	284	84	87	8.9999
GGG	chr19:46332242-46332534(-)$1	292	5	8	8.9999
GGG	chr11:72410436-72410694(-)$1	258	59	62	8.9999
GGG	chr19:59060721-59060960(+)$1	239	23	26	8.9999
GGG	chr8:48691077-48691318(-)$1	241	99	102	8.9999
GGG	chr9:35710885-35711091(-)$1	206	11	14	8.9999
GGG	chr9:35712744-35712963(-)$1	219	148	151	8.9999
GGG	chrX:53620365-53620589(-)$1	224	39	42	8.9999
GGG	chr8:48883054-48883297(+)$1	243	72	75	8.9999
GGG	chr19:59057049-59057263(+)$1	214	19	22	8.9999
GGG	chr17:79875942-79876197(-)$1	255	70	73	8.9999
GGG	chr1:226568688-226568929(-)$1	241	55	58	8.9999
GGG	chr1:227152698-227153058(+)$1	360	163	166	8.9999
GGG	chr7:100730768-100731027(+)$1	259	65	68	8.9999
GGG	chr16:70289557-70289792(-)$1	235	5	8	8.9999
GGG	chr17:40054790-40055026(-)$1	236	49	52	8.9999
GGG	chr14:102510598-102510821(+)$1	223	11	14	8.9999
GGG	chr6:31750417-31750683(-)$1	266	39	42	8.9999
GGG	chr6:31750019-31750278(-)$1	259	7	10	8.9999
GGG	chr5:138264898-138265146(+)$1	248	165	168	8.9999
GGG	chr9:35725211-35725418(-)$1	207	27	30	8.9999
GGG	chrX:47065372-47065612(+)$1	240	169	172	8.9999
GGG	chr19:30433374-30433662(+)$1	288	3	6	8.9999
GGG	chr19:50906260-50906557(+)$1	297	11	14	8.9999
GGG	chrX:153588368-153588594(-)$1	226	35	38	8.9999
GGG	chr12:56522128-56522361(+)$1	233	91	94	8.9999
GGG	chr17:1580189-1580399(-)$1	210	5	8	8.9999
GGG	chr8:144995658-144995897(-)$1	239	6	9	8.9999
GGG	chr17:42288069-42288347(-)$1	278	31	34	8.9999
GGG	chr5:60656777-60657041(+)$1	264	178	181	8.9999
GGG	chr6:31749165-31749401(-)$1	236	107	110	8.9999
GGG	chr18:9742500-9742760(+)$1	260	109	112	8.9999
GGG	chr12:6626732-6626950(+)$1	218	90	93	8.9999
GGG	chr6:31599411-31599637(+)$1	226	14	17	8.9999
GGG	chr11:65733304-65733553(+)$1	249	79	82	8.9999
GGG	chr9:35061003-35061264(-)$1	261	106	109	8.9999
GGG	chr1:977233-977590(+)$1	357	11	14	8.9999
GGG	chr5:137089368-137089644(-)$1	276	130	133	8.9999
GGG	chr7:128486405-128486617(+)$1	212	10	13	8.9999
ggg	chr6:10887758-10887962(+)$1	204	120	123	8.9999
GGG	chr2:152266813-152267087(+)$1	274	15	18	8.9999
GGG	chrX:153593704-153593947(-)$1	243	114	117	8.9999
ggg	chr19:2151151-2151467(-)$1	316	54	57	8.9999
GGG	chr1:55680413-55680699(-)$1	286	50	53	8.9999

#otherMatches

#Struct PSSM
imm	chr11:62301042-62301326(-)$1	284	67	70	8.9999
fff	chr11:65347451-65347707(+)$1	256	24	27	8.9999
DDD	chr5:138260870-138261115(+)$1	245	14	17	8.9999
GGG	chr8:144992936-144993197(-)$1	261	10	13	8.9999
b]d	chr21:33706411-33706654(-)$1	243	23	26	8.9999
""b	chr1:19464516-19464749(-)$1	233	115	118	8.9999
fff	chr21:34922690-34922996(+)$1	306	32	35	8.9999
fff	chr14:65260195-65260437(-)$1	242	118	121	8.9999
!cc	chr1:220156567-220156787(-)$1	220	111	114	8.9999
GGG	chr22:21800359-21800600(+)$1	241	72	75	8.9999
[dd	chr12:6697408-6697662(-)$1	254	120	123	8.9999
hhh	chr14:102430807-102431065(+)$1	258	40	43	8.9999
=ee	chr17:1564299-1564537(-)$1	238	34	37	8.9999
f[a	chr17:40075044-40075302(-)$1	258	13	16	8.9999
::D	chr18:18690883-18691187(-)$1	304	1	4	8.9999
EEE	chrX:153582937-153583170(-)$1	233	39	42	8.9999
:::	chr1:19419771-19419985(-)$1	214	90	93	8.9999
cch	chr11:65824246-65824526(+)$1	280	6	9	8.9999
DDD	chr2:74592619-74592884(-)$1	265	260	263	8.9999
fff	chrX:47072328-47072590(+)$1	262	156	159	8.9999
occ	chr10:71139680-71139933(+)$1	253	75	78	8.9999
ccc	chr19:14574577-14574872(+)$1	295	147	150	8.9999
eee	chr21:47676679-47676954(-)$1	275	101	104	8.9999
hhh	chr19:47423559-47423803(+)$1	244	181	184	8.9999
GGM	chr10:71158333-71158609(+)$1	276	43	46	8.9999
===	chr7:150068905-150069156(+)$1	251	61	64	8.9999
iii	chr17:1582553-1582797(-)$1	244	77	80	8.9999
ddd	chr7:72936175-72936460(-)$1	285	106	109	8.9999
III	chr14:102483392-102483623(+)$1	231	37	40	8.9999
ffe	chrX:53574886-53575142(-)$1	256	166	169	8.9999
eed	chr6:31958156-31958358(+)$1	202	102	105	8.9999
OCC	chr8:144993070-144993311(-)$1	241	16	19	8.9999
DDD	chrX:53571971-53572221(-)$1	250	214	217	8.9999
eee	chrX:153580152-153580385(-)$1	233	54	57	8.9999
dff	chr19:46857058-46857342(+)$1	284	84	87	8.9999
EE{	chr19:46332242-46332534(-)$1	292	5	8	8.9999
nnc	chr11:72410436-72410694(-)$1	258	59	62	8.9999
ggg	chr19:59060721-59060960(+)$1	239	23	26	8.9999
CCC	chr8:48691077-48691318(-)$1	241	99	102	8.9999
hhh	chr9:35710885-35711091(-)$1	206	11	14	8.9999
ddd	chr9:35712744-35712963(-)$1	219	148	151	8.9999
FFF	chrX:53620365-53620589(-)$1	224	39	42	8.9999
qqq	chr8:48883054-48883297(+)$1	243	72	75	8.9999
ddc	chr19:59057049-59057263(+)$1	214	19	22	8.9999
JCC	chr17:79875942-79876197(-)$1	255	70	73	8.9999
eee	chr1:226568688-226568929(-)$1	241	55	58	8.9999
ddd	chr1:227152698-227153058(+)$1	360	163	166	8.9999
ddd	chr7:100730768-100731027(+)$1	259	65	68	8.9999
BB{	chr16:70289557-70289792(-)$1	235	5	8	8.9999
ggg	chr17:40054790-40055026(-)$1	236	49	52	8.9999
ccc	chr14:102510598-102510821(+)$1	223	11	14	8.9999
ggg	chr6:31750417-31750683(-)$1	266	39	42	8.9999
:CC	chr6:31750019-31750278(-)$1	259	7	10	8.9999
cff	chr5:138264898-138265146(+)$1	248	165	168	8.9999
eee	chr9:35725211-35725418(-)$1	207	27	30	8.9999
d[c	chrX:47065372-47065612(+)$1	240	169	172	8.9999
FFF	chr19:30433374-30433662(+)$1	288	3	6	8.9999
EEE	chr19:50906260-50906557(+)$1	297	11	14	8.9999
eff	chrX:153588368-153588594(-)$1	226	35	38	8.9999
edd	chr12:56522128-56522361(+)$1	233	91	94	8.9999
eee	chr17:1580189-1580399(-)$1	210	5	8	8.9999
ggg	chr8:144995658-144995897(-)$1	239	6	9	8.9999
ddd	chr17:42288069-42288347(-)$1	278	31	34	8.9999
:cc	chr5:60656777-60657041(+)$1	264	178	181	8.9999
dd2	chr6:31749165-31749401(-)$1	236	107	110	8.9999
ggg	chr18:9742500-9742760(+)$1	260	109	112	8.9999
eee	chr12:6626732-6626950(+)$1	218	90	93	8.9999
BB:	chr6:31599411-31599637(+)$1	226	14	17	8.9999
ddd	chr11:65733304-65733553(+)$1	249	79	82	8.9999
###	chr9:35061003-35061264(-)$1	261	106	109	8.9999
CCB	chr1:977233-977590(+)$1	357	11	14	8.9999
c==	chr5:137089368-137089644(-)$1	276	130	133	8.9999
EEE	chr7:128486405-128486617(+)$1	212	10	13	8.9999
eee	chr6:10887758-10887962(+)$1	204	120	123	8.9999
JJd	chr2:152266813-152267087(+)$1	274	15	18	8.9999
ddd	chrX:153593704-153593947(-)$1	243	114	117	8.9999
:FF	chr19:2151151-2151467(-)$1	316	54	57	8.9999
dgg	chr1:55680413-55680699(-)$1	286	50	53	8.9999

#DB
(..	chr11:62301042-62301326(-)$1	1	67	70	8.9999
(((	chr11:65347451-65347707(+)$1	1	24	27	8.9999
(((	chr5:138260870-138261115(+)$1	1	14	17	8.9999
(((	chr8:144992936-144993197(-)$1	1	10	13	8.9999
).)	chr21:33706411-33706654(-)$1	1	23	26	8.9999
..(	chr1:19464516-19464749(-)$1	1	115	118	8.9999
(((	chr21:34922690-34922996(+)$1	1	32	35	8.9999
(((	chr14:65260195-65260437(-)$1	1	118	121	8.9999
.((	chr1:220156567-220156787(-)$1	1	111	114	8.9999
(((	chr22:21800359-21800600(+)$1	1	72	75	8.9999
.((	chr12:6697408-6697662(-)$1	1	120	123	8.9999
(((	chr14:102430807-102431065(+)$1	1	40	43	8.9999
(((	chr17:1564299-1564537(-)$1	1	34	37	8.9999
(.(	chr17:40075044-40075302(-)$1	1	13	16	8.9999
..(	chr18:18690883-18691187(-)$1	1	1	4	8.9999
(((	chrX:153582937-153583170(-)$1	1	39	42	8.9999
...	chr1:19419771-19419985(-)$1	1	90	93	8.9999
(((	chr11:65824246-65824526(+)$1	1	6	9	8.9999
)))	chr2:74592619-74592884(-)$1	1	260	263	8.9999
)))	chrX:47072328-47072590(+)$1	1	156	159	8.9999
.))	chr10:71139680-71139933(+)$1	1	75	78	8.9999
)))	chr19:14574577-14574872(+)$1	1	147	150	8.9999
(((	chr21:47676679-47676954(-)$1	1	101	104	8.9999
(((	chr19:47423559-47423803(+)$1	1	181	184	8.9999
((.	chr10:71158333-71158609(+)$1	1	43	46	8.9999
)))	chr7:150068905-150069156(+)$1	1	61	64	8.9999
(((	chr17:1582553-1582797(-)$1	1	77	80	8.9999
)))	chr7:72936175-72936460(-)$1	1	106	109	8.9999
(((	chr14:102483392-102483623(+)$1	1	37	40	8.9999
(((	chrX:53574886-53575142(-)$1	1	166	169	8.9999
))(	chr6:31958156-31958358(+)$1	1	102	105	8.9999
.((	chr8:144993070-144993311(-)$1	1	16	19	8.9999
)))	chrX:53571971-53572221(-)$1	1	214	217	8.9999
)))	chrX:153580152-153580385(-)$1	1	54	57	8.9999
)))	chr19:46857058-46857342(+)$1	1	84	87	8.9999
((.	chr19:46332242-46332534(-)$1	1	5	8	8.9999
..)	chr11:72410436-72410694(-)$1	1	59	62	8.9999
(((	chr19:59060721-59060960(+)$1	1	23	26	8.9999
)))	chr8:48691077-48691318(-)$1	1	99	102	8.9999
(((	chr9:35710885-35711091(-)$1	1	11	14	8.9999
(((	chr9:35712744-35712963(-)$1	1	148	151	8.9999
(((	chrX:53620365-53620589(-)$1	1	39	42	8.9999
...	chr8:48883054-48883297(+)$1	1	72	75	8.9999
)))	chr19:59057049-59057263(+)$1	1	19	22	8.9999
(((	chr17:79875942-79876197(-)$1	1	70	73	8.9999
(((	chr1:226568688-226568929(-)$1	1	55	58	8.9999
)))	chr1:227152698-227153058(+)$1	1	163	166	8.9999
(((	chr7:100730768-100731027(+)$1	1	65	68	8.9999
((.	chr16:70289557-70289792(-)$1	1	5	8	8.9999
(((	chr17:40054790-40055026(-)$1	1	49	52	8.9999
)))	chr14:102510598-102510821(+)$1	1	11	14	8.9999
(((	chr6:31750417-31750683(-)$1	1	39	42	8.9999
.((	chr6:31750019-31750278(-)$1	1	7	10	8.9999
)((	chr5:138264898-138265146(+)$1	1	165	168	8.9999
(((	chr9:35725211-35725418(-)$1	1	27	30	8.9999
(.(	chrX:47065372-47065612(+)$1	1	169	172	8.9999
(((	chr19:30433374-30433662(+)$1	1	3	6	8.9999
(((	chr19:50906260-50906557(+)$1	1	11	14	8.9999
(((	chrX:153588368-153588594(-)$1	1	35	38	8.9999
)((	chr12:56522128-56522361(+)$1	1	91	94	8.9999
(((	chr17:1580189-1580399(-)$1	1	5	8	8.9999
(((	chr8:144995658-144995897(-)$1	1	6	9	8.9999
)))	chr17:42288069-42288347(-)$1	1	31	34	8.9999
.((	chr5:60656777-60657041(+)$1	1	178	181	8.9999
)).	chr6:31749165-31749401(-)$1	1	107	110	8.9999
)))	chr18:9742500-9742760(+)$1	1	109	112	8.9999
(((	chr12:6626732-6626950(+)$1	1	90	93	8.9999
((.	chr6:31599411-31599637(+)$1	1	14	17	8.9999
)))	chr11:65733304-65733553(+)$1	1	79	82	8.9999
...	chr9:35061003-35061264(-)$1	1	106	109	8.9999
(((	chr1:977233-977590(+)$1	1	11	14	8.9999
)))	chr5:137089368-137089644(-)$1	1	130	133	8.9999
(((	chr7:128486405-128486617(+)$1	1	10	13	8.9999
(((	chr6:10887758-10887962(+)$1	1	120	123	8.9999
(((	chr2:152266813-152267087(+)$1	1	15	18	8.9999
(((	chrX:153593704-153593947(-)$1	1	114	117	8.9999
.((	chr19:2151151-2151467(-)$1	1	54	57	8.9999
)))	chr1:55680413-55680699(-)$1	1	50	53	8.9999

#PSSM
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	

#score	701.9999999999998
#seq	78
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_UTR_m1_run2.nuc.txt

#NT
CCCA	chr12:123465410-123465655(+)$1	245	5	9	12.0000
CCCA	chr15:31222589-31222862(+)$1	273	265	269	12.0000
CCCA	chr19:5705884-5706155(-)$1	271	97	101	12.0000
CCCA	chr1:38274013-38274267(+)$1	254	246	250	12.0000
CCCA	chr14:24649863-24650122(-)$1	259	220	224	12.0000
CCCA	chr1:24125815-24126084(-)$1	269	37	41	12.0000
CCCA	chr19:12781032-12781357(-)$1	325	44	48	12.0000
CCCA	chr2:131126543-131126820(+)$1	277	184	188	12.0000
CCCA	chr3:184043115-184043389(+)$1	274	64	68	12.0000
CCCA	chr17:73811090-73811357(+)$1	267	232	236	12.0000
CCCA	chr19:11664146-11664406(-)$1	260	194	198	12.0000
ccca	chr1:28835198-28835452(+)$1	254	24	28	12.0000
CCCA	chr4:71691039-71691299(-)$1	260	239	243	12.0000
ccca	chr16:24807081-24807342(+)$1	261	26	30	12.0000
CCCA	chr16:2313172-2313458(-)$1	286	33	37	12.0000
CCCA	chr19:54609095-54609346(+)$1	251	158	162	12.0000
CCCA	chr17:79684280-79684530(+)$1	250	98	102	12.0000
CCCA	chr7:5434119-5434404(-)$1	285	8	12	12.0000
CCCA	chr8:134251257-134251565(-)$1	308	64	68	12.0000
CCCA	chr16:89804220-89804485(+)$1	265	116	120	12.0000
CCCA	chr16:28996535-28996789(+)$1	254	8	12	12.0000
Ccca	chr16:83842080-83842353(+)$1	273	14	18	12.0000
CCCA	chr14:24657346-24657620(-)$1	274	210	214	12.0000
ccca	chr19:5927985-5928266(-)$1	281	0	4	12.0000
CCCA	chr5:881185-881445(-)$1	260	59	63	12.0000
CCCA	chr1:113068639-113068896(-)$1	257	182	186	12.0000
CCCA	chr16:31099042-31099303(-)$1	261	78	82	12.0000
CCCA	chr19:35500161-35500429(+)$1	268	24	28	12.0000
CCCA	chr2:85829093-85829345(-)$1	252	3	7	12.0000
CCCA	chr2:61405924-61406146(+)$1	222	134	138	12.0000
CCCA	chr12:56554877-56555087(+)$1	210	168	172	12.0000
CCCA	chr8:141545558-141545816(-)$1	258	200	204	12.0000
CCCA	chr5:179263269-179263521(+)$1	252	196	200	12.0000
CCCA	chr19:15514398-15514683(-)$1	285	21	25	12.0000
CCCA	chr19:55857410-55857681(+)$1	271	61	65	12.0000
CCCA	chr10:43892009-43892321(-)$1	312	26	30	12.0000
CCCA	chr14:23397716-23397985(-)$1	269	13	17	12.0000
CCCA	chr7:1476343-1476659(-)$1	316	46	50	12.0000
CCCA	chr22:26861434-26861697(-)$1	263	8	12	12.0000
CCCA	chr2:74699271-74699532(-)$1	261	105	109	12.0000
CCCA	chr6:31638729-31639025(+)$1	296	66	70	12.0000
CCCA	chr17:17722949-17723215(-)$1	266	39	43	12.0000
ccca	chr1:1250886-1251162(-)$1	276	15	19	12.0000
CCCA	chr17:45727577-45727853(+)$1	276	155	159	12.0000
CCCA	chrX:153579955-153580227(-)$1	272	31	35	12.0000
CCCA	chr14:21464790-21465036(+)$1	246	128	132	12.0000
CCCA	chr12:49317534-49317821(-)$1	287	252	256	12.0000
CCCA	chr16:1557158-1557416(+)$1	258	65	69	12.0000
CCCA	chr17:17119697-17119979(-)$1	282	8	12	12.0000
CCCA	chr6:36098880-36099159(+)$1	279	42	46	12.0000
CCCA	chr1:32792948-32793250(+)$1	302	141	145	12.0000
CCCA	chr11:3041458-3041699(-)$1	241	46	50	12.0000
CCCA	chr11:118962961-118963213(+)$1	252	3	7	12.0000
CCCA	chr16:30106678-30106937(-)$1	259	89	93	12.0000
CCCA	chr17:73127279-73127568(-)$1	289	126	130	12.0000
CCCA	chr2:3482453-3482729(+)$1	276	201	205	12.0000
CCCA	chr1:227148906-227149188(+)$1	282	235	239	12.0000
CCCA	chr1:90309009-90309283(+)$1	274	61	65	12.0000
CCCA	chr17:79880986-79881243(-)$1	257	191	195	12.0000
ccca	chr12:53342532-53342776(-)$1	244	10	14	12.0000
CCCA	chr2:220093101-220093349(-)$1	248	20	24	12.0000
CCCA	chr7:44613747-44613993(-)$1	246	77	81	12.0000
CCCA	chr19:10464266-10464532(-)$1	266	71	75	12.0000
CCCA	chr19:56657437-56657717(+)$1	280	65	69	12.0000
CCCA	chr16:4863746-4864017(-)$1	271	171	175	12.0000
CCCA	chr20:30729180-30729427(+)$1	247	22	26	12.0000
CCCA	chr5:179047901-179048143(-)$1	242	42	46	12.0000
CCCA	chr16:23478170-23478424(-)$1	254	110	114	12.0000
CCCA	chr17:7748470-7748732(+)$1	262	93	97	12.0000
CCCA	chr14:24650932-24651193(-)$1	261	26	30	12.0000
CCCA	chr20:43561496-43561743(+)$1	247	96	100	12.0000
CCCA	chr12:122239668-122239913(-)$1	245	238	242	12.0000
CCCA	chr15:52553222-52553487(-)$1	265	4	8	12.0000
CCCA	chr17:79059295-79059564(+)$1	269	73	77	12.0000
CCCA	chr2:201724329-201724623(-)$1	294	229	233	12.0000
CCCA	chr14:95080589-95080865(+)$1	276	36	40	12.0000
CCCA	chr19:50363311-50363578(-)$1	267	24	28	12.0000
CCCA	chr19:15510116-15510391(-)$1	275	11	15	12.0000
CCCA	chr16:89334960-89335239(-)$1	279	46	50	12.0000
CCCA	chr17:7080584-7080798(-)$1	214	15	19	12.0000
CCCA	chr3:9862052-9862352(+)$1	300	40	44	12.0000
CCCA	chr17:78180763-78181063(-)$1	300	37	41	12.0000
CCCA	chr21:45735910-45736230(+)$1	320	37	41	12.0000
CCCA	chr2:241511659-241511940(+)$1	281	7	11	12.0000
CCCA	chr11:71712675-71712943(+)$1	268	23	27	12.0000
CCCA	chr14:24740286-24740543(-)$1	257	52	56	12.0000
CCCA	chr19:36037868-36038126(+)$1	258	80	84	12.0000
CCCA	chr8:134256508-134256794(-)$1	286	14	18	12.0000

#otherMatches

#Struct PSSM
====	chr14:23794268-23794522(+)$1	254	12	16	12.0000
HHH:	chr12:123465410-123465655(+)$1	245	5	9	12.0000
:EEE	chr15:31222589-31222862(+)$1	273	265	269	12.0000
!ccc	chr19:5705884-5706155(-)$1	271	97	101	12.0000
EEE}	chr1:38274013-38274267(+)$1	254	246	250	12.0000
uubb	chr14:24649863-24650122(-)$1	259	220	224	12.0000
gggg	chr1:24125815-24126084(-)$1	269	37	41	12.0000
eee!	chr19:12781032-12781357(-)$1	325	44	48	12.0000
hhhh	chr2:131126543-131126820(+)$1	277	184	188	12.0000
CCCL	chr3:184043115-184043389(+)$1	274	64	68	12.0000
ssss	chr17:73811090-73811357(+)$1	267	232	236	12.0000
oooo	chr19:11664146-11664406(-)$1	260	194	198	12.0000
hhhh	chr1:28835198-28835452(+)$1	254	24	28	12.0000
A}CC	chr4:71691039-71691299(-)$1	260	239	243	12.0000
e[a"	chr16:24807081-24807342(+)$1	261	26	30	12.0000
ffff	chr16:2313172-2313458(-)$1	286	33	37	12.0000
d:cc	chr19:54609095-54609346(+)$1	251	158	162	12.0000
eeee	chr17:79684280-79684530(+)$1	250	98	102	12.0000
[ggg	chr7:5434119-5434404(-)$1	285	8	12	12.0000
iiii	chr8:134251257-134251565(-)$1	308	64	68	12.0000
eee:	chr16:89804220-89804485(+)$1	265	116	120	12.0000
DFFF	chr16:28996535-28996789(+)$1	254	8	12	12.0000
LLDD	chr16:83842080-83842353(+)$1	273	14	18	12.0000
ca33	chr14:24657346-24657620(-)$1	274	210	214	12.0000
CCCK	chr19:5927985-5928266(-)$1	281	0	4	12.0000
+ccc	chr5:881185-881445(-)$1	260	59	63	12.0000
dddd	chr1:113068639-113068896(-)$1	257	182	186	12.0000
2ggg	chr16:31099042-31099303(-)$1	261	78	82	12.0000
JJJJ	chr19:35500161-35500429(+)$1	268	24	28	12.0000
:GGG	chr2:85829093-85829345(-)$1	252	3	7	12.0000
leee	chr2:61405924-61406146(+)$1	222	134	138	12.0000
fccc	chr12:56554877-56555087(+)$1	210	168	172	12.0000
::::	chr8:141545558-141545816(-)$1	258	200	204	12.0000
c]cc	chr5:179263269-179263521(+)$1	252	196	200	12.0000
ggg"	chr19:15514398-15514683(-)$1	285	21	25	12.0000
ffff	chr19:55857410-55857681(+)$1	271	61	65	12.0000
::::	chr10:43892009-43892321(-)$1	312	26	30	12.0000
::::	chr14:23397716-23397985(-)$1	269	13	17	12.0000
GGGG	chr7:1476343-1476659(-)$1	316	46	50	12.0000
::DD	chr22:26861434-26861697(-)$1	263	8	12	12.0000
c[bb	chr2:74699271-74699532(-)$1	261	105	109	12.0000
KKGG	chr6:31638729-31639025(+)$1	296	66	70	12.0000
CC{F	chr17:17722949-17723215(-)$1	266	39	43	12.0000
LDDD	chr1:1250886-1251162(-)$1	276	15	19	12.0000
bbbb	chr17:45727577-45727853(+)$1	276	155	159	12.0000
""hh	chrX:153579955-153580227(-)$1	272	31	35	12.0000
eeee	chr14:21464790-21465036(+)$1	246	128	132	12.0000
EEEE	chr12:49317534-49317821(-)$1	287	252	256	12.0000
mmmh	chr16:1557158-1557416(+)$1	258	65	69	12.0000
::::	chr17:17119697-17119979(-)$1	282	8	12	12.0000
dddd	chr6:36098880-36099159(+)$1	279	42	46	12.0000
occc	chr1:32792948-32793250(+)$1	302	141	145	12.0000
::::	chr11:3041458-3041699(-)$1	241	46	50	12.0000
dd[e	chr11:118962961-118963213(+)$1	252	3	7	12.0000
====	chr16:30106678-30106937(-)$1	259	89	93	12.0000
GGGG	chr17:73127279-73127568(-)$1	289	126	130	12.0000
JJJJ	chr2:3482453-3482729(+)$1	276	201	205	12.0000
ammm	chr1:227148906-227149188(+)$1	282	235	239	12.0000
ddoo	chr1:90309009-90309283(+)$1	274	61	65	12.0000
gg++	chr17:79880986-79881243(-)$1	257	191	195	12.0000
DDDD	chr12:53342532-53342776(-)$1	244	10	14	12.0000
uuuu	chr2:220093101-220093349(-)$1	248	20	24	12.0000
ddat	chr7:44613747-44613993(-)$1	246	77	81	12.0000
3ccc	chr19:10464266-10464532(-)$1	266	71	75	12.0000
HHHH	chr19:56657437-56657717(+)$1	280	65	69	12.0000
""cc	chr16:4863746-4864017(-)$1	271	171	175	12.0000
c:::	chr20:30729180-30729427(+)$1	247	22	26	12.0000
NNNN	chr5:179047901-179048143(-)$1	242	42	46	12.0000
mmcc	chr16:23478170-23478424(-)$1	254	110	114	12.0000
eeee	chr17:7748470-7748732(+)$1	262	93	97	12.0000
eeee	chr14:24650932-24651193(-)$1	261	26	30	12.0000
dddd	chr20:43561496-43561743(+)$1	247	96	100	12.0000
CC::	chr12:122239668-122239913(-)$1	245	238	242	12.0000
EHHH	chr15:52553222-52553487(-)$1	265	4	8	12.0000
b:::	chr17:79059295-79059564(+)$1	269	73	77	12.0000
eeee	chr2:201724329-201724623(-)$1	294	229	233	12.0000
IIII	chr14:95080589-95080865(+)$1	276	36	40	12.0000
dlll	chr19:50363311-50363578(-)$1	267	24	28	12.0000
b"""	chr19:15510116-15510391(-)$1	275	11	15	12.0000
ccco	chr16:89334960-89335239(-)$1	279	46	50	12.0000
B::d	chr17:7080584-7080798(-)$1	214	15	19	12.0000
qqbb	chr3:9862052-9862352(+)$1	300	40	44	12.0000
ccbb	chr17:78180763-78181063(-)$1	300	37	41	12.0000
clll	chr21:45735910-45736230(+)$1	320	37	41	12.0000
emmm	chr2:241511659-241511940(+)$1	281	7	11	12.0000
dlll	chr11:71712675-71712943(+)$1	268	23	27	12.0000
""cc	chr14:24740286-24740543(-)$1	257	52	56	12.0000
++++	chr19:36037868-36038126(+)$1	258	80	84	12.0000
rrrh	chr8:134256508-134256794(-)$1	286	14	18	12.0000

#DB
((((	chr14:23794268-23794522(+)$1	1	12	16	12.0000
(((.	chr12:123465410-123465655(+)$1	1	5	9	12.0000
.)))	chr15:31222589-31222862(+)$1	1	265	269	12.0000
.(((	chr19:5705884-5706155(-)$1	1	97	101	12.0000
))).	chr1:38274013-38274267(+)$1	1	246	250	12.0000
..))	chr14:24649863-24650122(-)$1	1	220	224	12.0000
((((	chr1:24125815-24126084(-)$1	1	37	41	12.0000
(((.	chr19:12781032-12781357(-)$1	1	44	48	12.0000
((((	chr2:131126543-131126820(+)$1	1	184	188	12.0000
(((.	chr3:184043115-184043389(+)$1	1	64	68	12.0000
....	chr17:73811090-73811357(+)$1	1	232	236	12.0000
....	chr19:11664146-11664406(-)$1	1	194	198	12.0000
((((	chr1:28835198-28835452(+)$1	1	24	28	12.0000
).))	chr4:71691039-71691299(-)$1	1	239	243	12.0000
(.(.	chr16:24807081-24807342(+)$1	1	26	30	12.0000
)))(	chr16:2313172-2313458(-)$1	1	33	37	12.0000
).((	chr19:54609095-54609346(+)$1	1	158	162	12.0000
((((	chr17:79684280-79684530(+)$1	1	98	102	12.0000
.(((	chr7:5434119-5434404(-)$1	1	8	12	12.0000
))))	chr8:134251257-134251565(-)$1	1	64	68	12.0000
))).	chr16:89804220-89804485(+)$1	1	116	120	12.0000
((((	chr16:28996535-28996789(+)$1	1	8	12	12.0000
..((	chr16:83842080-83842353(+)$1	1	14	18	12.0000
))..	chr14:24657346-24657620(-)$1	1	210	214	12.0000
(((.	chr19:5927985-5928266(-)$1	1	0	4	12.0000
.(((	chr5:881185-881445(-)$1	1	59	63	12.0000
((((	chr1:113068639-113068896(-)$1	1	182	186	12.0000
.)))	chr16:31099042-31099303(-)$1	1	78	82	12.0000
((((	chr19:35500161-35500429(+)$1	1	24	28	12.0000
.(((	chr2:85829093-85829345(-)$1	1	3	7	12.0000
.)))	chr2:61405924-61406146(+)$1	1	134	138	12.0000
)(((	chr12:56554877-56555087(+)$1	1	168	172	12.0000
....	chr8:141545558-141545816(-)$1	1	200	204	12.0000
).))	chr5:179263269-179263521(+)$1	1	196	200	12.0000
(((.	chr19:15514398-15514683(-)$1	1	21	25	12.0000
((((	chr19:55857410-55857681(+)$1	1	61	65	12.0000
....	chr10:43892009-43892321(-)$1	1	26	30	12.0000
....	chr14:23397716-23397985(-)$1	1	13	17	12.0000
((((	chr7:1476343-1476659(-)$1	1	46	50	12.0000
..((	chr22:26861434-26861697(-)$1	1	8	12	12.0000
(.((	chr2:74699271-74699532(-)$1	1	105	109	12.0000
..((	chr6:31638729-31639025(+)$1	1	66	70	12.0000
((.(	chr17:17722949-17723215(-)$1	1	39	43	12.0000
.(((	chr1:1250886-1251162(-)$1	1	15	19	12.0000
))))	chr17:45727577-45727853(+)$1	1	155	159	12.0000
..((	chrX:153579955-153580227(-)$1	1	31	35	12.0000
))))	chr14:21464790-21465036(+)$1	1	128	132	12.0000
))))	chr12:49317534-49317821(-)$1	1	252	256	12.0000
...)	chr16:1557158-1557416(+)$1	1	65	69	12.0000
....	chr17:17119697-17119979(-)$1	1	8	12	12.0000
((((	chr6:36098880-36099159(+)$1	1	42	46	12.0000
.)))	chr1:32792948-32793250(+)$1	1	141	145	12.0000
....	chr11:3041458-3041699(-)$1	1	46	50	12.0000
((.(	chr11:118962961-118963213(+)$1	1	3	7	12.0000
((((	chr16:30106678-30106937(-)$1	1	89	93	12.0000
))))	chr17:73127279-73127568(-)$1	1	126	130	12.0000
))))	chr2:3482453-3482729(+)$1	1	201	205	12.0000
(...	chr1:227148906-227149188(+)$1	1	235	239	12.0000
((..	chr1:90309009-90309283(+)$1	1	61	65	12.0000
((..	chr17:79880986-79881243(-)$1	1	191	195	12.0000
((((	chr12:53342532-53342776(-)$1	1	10	14	12.0000
....	chr2:220093101-220093349(-)$1	1	20	24	12.0000
(((.	chr7:44613747-44613993(-)$1	1	77	81	12.0000
.)))	chr19:10464266-10464532(-)$1	1	71	75	12.0000
((((	chr19:56657437-56657717(+)$1	1	65	69	12.0000
..((	chr16:4863746-4864017(-)$1	1	171	175	12.0000
)...	chr20:30729180-30729427(+)$1	1	22	26	12.0000
....	chr5:179047901-179048143(-)$1	1	42	46	12.0000
..))	chr16:23478170-23478424(-)$1	1	110	114	12.0000
((((	chr17:7748470-7748732(+)$1	1	93	97	12.0000
((((	chr14:24650932-24651193(-)$1	1	26	30	12.0000
))))	chr20:43561496-43561743(+)$1	1	96	100	12.0000
))..	chr12:122239668-122239913(-)$1	1	238	242	12.0000
((((	chr15:52553222-52553487(-)$1	1	4	8	12.0000
)...	chr17:79059295-79059564(+)$1	1	73	77	12.0000
((((	chr2:201724329-201724623(-)$1	1	229	233	12.0000
((((	chr14:95080589-95080865(+)$1	1	36	40	12.0000
(...	chr19:50363311-50363578(-)$1	1	24	28	12.0000
(...	chr19:15510116-15510391(-)$1	1	11	15	12.0000
(((.	chr16:89334960-89335239(-)$1	1	46	50	12.0000
(..(	chr17:7080584-7080798(-)$1	1	15	19	12.0000
..))	chr3:9862052-9862352(+)$1	1	40	44	12.0000
((((	chr17:78180763-78181063(-)$1	1	37	41	12.0000
(...	chr21:45735910-45736230(+)$1	1	37	41	12.0000
(...	chr2:241511659-241511940(+)$1	1	7	11	12.0000
(...	chr11:71712675-71712943(+)$1	1	23	27	12.0000
..((	chr14:24740286-24740543(-)$1	1	52	56	12.0000
....	chr19:36037868-36038126(+)$1	1	80	84	12.0000
...)	chr8:134256508-134256794(-)$1	1	14	18	12.0000

#PSSM
C : 0.94	c : 0.05	
C : 0.93	c : 0.06	
C : 0.93	c : 0.06	
A : 0.93	a : 0.06	

#score	1068.0000000000005
#seq	89
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_UTR_m3_run2.nuc.txt

#NT
UGUU	chr4:74321376-74321587(+)$1	211	114	118	11.9999
UGUU	chr14:69254643-69254936(-)$1	293	117	121	11.9999
UGUU	chr3:32933771-32934040(+)$1	269	47	51	11.9999
UGUU	chr8:22278992-22279202(+)$1	210	58	62	11.9999
UGUU	chr6:114181938-114182186(+)$1	248	22	26	11.9999
UGUU	chr17:37009850-37010070(-)$1	220	129	133	11.9999
UGUU	chr4:83345739-83345986(-)$1	247	3	7	11.9999
UGUU	chr2:101893454-101893685(-)$1	231	197	201	11.9999
UGUU	chr2:102796065-102796379(+)$1	314	1	5	11.9999
UGUU	chr17:80196816-80197059(+)$1	243	176	180	11.9999
UGUU	chr17:48827968-48828209(+)$1	241	97	101	11.9999
UGUU	chr17:30696720-30696976(+)$1	256	113	117	11.9999
UGUU	chr17:74730958-74731185(-)$1	227	75	79	11.9999
UGUU	chr15:77241841-77242148(+)$1	307	137	141	11.9999
UGUU	chr7:45932751-45932963(+)$1	212	87	91	11.9999
UGUU	chr7:103112421-103112687(-)$1	266	47	51	11.9999
UGUU	chr3:145787344-145787571(-)$1	227	2	6	11.9999
UGUU	chr1:165697042-165697334(-)$1	292	135	139	11.9999
UGUU	chr10:74767795-74768064(-)$1	269	111	115	11.9999
UGUU	chr10:5499474-5499764(+)$1	290	33	37	11.9999
UGUU	chr1:116947204-116947450(+)$1	246	102	106	11.9999
UGUU	chr5:42800079-42800314(-)$1	235	92	96	11.9999
UGUU	chr2:232577757-232578024(+)$1	267	64	68	11.9999
UGUU	chr12:106631607-106631831(-)$1	224	1	5	11.9999
UGUU	chr15:64430209-64430495(+)$1	286	11	15	11.9999
UGUU	chr1:230838472-230838732(-)$1	260	124	128	11.9999
UGUU	chr14:69846801-69847066(-)$1	265	55	59	11.9999
UGUU	chr19:48886313-48886559(-)$1	246	197	201	11.9999
UGUU	chr17:53470280-53470555(-)$1	275	82	86	11.9999
UGUU	chr17:7076806-7077044(-)$1	238	193	197	11.9999
UGUU	chr18:56994982-56995225(-)$1	243	213	217	11.9999
UGUU	chr4:155525247-155525499(-)$1	252	131	135	11.9999
UGUU	chr14:39501783-39502017(-)$1	234	94	98	11.9999
UGUU	chr2:97525527-97525815(-)$1	288	36	40	11.9999
UGUU	chr6:119500389-119500636(-)$1	247	38	42	11.9999
UGUU	chr17:38326997-38327254(+)$1	257	4	8	11.9999
UGUU	chr1:36770526-36770791(+)$1	265	112	116	11.9999
UGUU	chr16:75611357-75611615(+)$1	258	55	59	11.9999
UGUU	chr1:150937714-150937974(-)$1	260	185	189	11.9999
UGUU	chr4:155525329-155525564(-)$1	235	42	46	11.9999
UGUU	chr15:52843905-52844156(-)$1	251	1	5	11.9999
UGUU	chr19:17513668-17513931(-)$1	263	88	92	11.9999
UGUU	chr1:23632729-23632977(-)$1	248	68	72	11.9999
UGUU	chr6:145173812-145174096(+)$1	284	88	92	11.9999
UGUU	chr2:85549638-85549884(-)$1	246	135	139	11.9999
UGUU	chr18:3277956-3278215(+)$1	259	60	64	11.9999
UGUU	chr1:205683247-205683499(-)$1	252	99	103	11.9999
UGUU	chr12:124082193-124082449(+)$1	256	32	36	11.9999
UGUU	chr5:137891424-137891724(-)$1	300	96	100	11.9999
UGUU	chr16:56977608-56977860(+)$1	252	39	43	11.9999
UGUU	chr7:128411252-128411501(+)$1	249	90	94	11.9999
UGUU	chr11:2151691-2151912(-)$1	221	57	61	11.9999
UGUU	chr7:94298501-94298724(+)$1	223	32	36	11.9999
UGUU	chr5:96369772-96370015(+)$1	243	160	164	11.9999
UGUU	chr7:103112618-103112862(-)$1	244	12	16	11.9999
UGUU	chr11:8704273-8704544(+)$1	271	95	99	11.9999
UGUU	chr3:5026609-5026877(+)$1	268	25	29	11.9999
UGUU	chr5:52782267-52782580(+)$1	313	60	64	11.9999
UGUU	chr6:33172051-33172269(+)$1	218	103	107	11.9999
UGUU	chr19:13054725-13054988(+)$1	263	139	143	11.9999
UGUU	chr7:44618426-44618672(-)$1	246	63	67	11.9999
UGUU	chr8:17721914-17722195(-)$1	281	102	106	11.9999
UGUU	chr6:160526627-160526866(+)$1	239	17	21	11.9999
UGUU	chr17:37884698-37884983(+)$1	285	69	73	11.9999
UGUU	chr10:114187114-114187424(+)$1	310	77	81	11.9999
UGUU	chr14:23303650-23303894(+)$1	244	18	22	11.9999
uguu	chr11:33163244-33163509(-)$1	265	178	182	11.9999
UGUU	chr2:122096547-122096841(-)$1	294	23	27	11.9999
UGUU	chr15:52842671-52842918(-)$1	247	79	83	11.9999
UGUU	chr2:228681964-228682208(+)$1	244	6	10	11.9999
UGUU	chr17:70121735-70121947(+)$1	212	2	6	11.9999
UGUU	chr20:61576637-61576940(+)$1	303	7	11	11.9999
uguu	chr14:53106699-53106940(-)$1	241	32	36	11.9999
UGUU	chr6:163994654-163994909(+)$1	255	122	126	11.9999
UGUU	chr10:97366154-97366415(-)$1	261	3	7	11.9999
UGuu	chr2:20648245-20648457(+)$1	212	56	60	11.9999
UGUU	chr5:74657417-74657690(+)$1	273	151	155	11.9999
UGUU	chr3:32938479-32938734(+)$1	255	51	55	11.9999
UGUU	chr4:122589136-122589408(-)$1	272	5	9	11.9999
UGUU	chr2:198351390-198351647(-)$1	257	194	198	11.9999
UGUU	chr8:57875227-57875472(-)$1	245	82	86	11.9999
UGUU	chr7:103112365-103112621(-)$1	256	113	117	11.9999
uGUU	chr20:10619516-10619733(-)$1	217	85	89	11.9999
UGUU	chr4:74321295-74321509(+)$1	214	195	199	11.9999
UGUU	chr2:65315317-65315566(-)$1	249	141	145	11.9999
UGUU	chr4:88258162-88258461(-)$1	299	103	107	11.9999

#otherMatches

#Struct PSSM
:::F	chr14:23239357-23239615(+)$1	258	8	12	11.9999
ffff	chr4:74321376-74321587(+)$1	211	114	118	11.9999
gggg	chr14:69254643-69254936(-)$1	293	117	121	11.9999
ggg$	chr3:32933771-32934040(+)$1	269	47	51	11.9999
rrrr	chr8:22278992-22279202(+)$1	210	58	62	11.9999
DDDD	chr6:114181938-114182186(+)$1	248	22	26	11.9999
::::	chr17:37009850-37010070(-)$1	220	129	133	11.9999
:::e	chr4:83345739-83345986(-)$1	247	3	7	11.9999
ffff	chr2:101893454-101893685(-)$1	231	197	201	11.9999
::::	chr2:102796065-102796379(+)$1	314	1	5	11.9999
mmmm	chr17:80196816-80197059(+)$1	243	176	180	11.9999
[ddd	chr17:48827968-48828209(+)$1	241	97	101	11.9999
eeem	chr17:30696720-30696976(+)$1	256	113	117	11.9999
::::	chr17:74730958-74731185(-)$1	227	75	79	11.9999
ccc5	chr15:77241841-77242148(+)$1	307	137	141	11.9999
2ccc	chr7:45932751-45932963(+)$1	212	87	91	11.9999
gggg	chr7:103112421-103112687(-)$1	266	47	51	11.9999
::BB	chr3:145787344-145787571(-)$1	227	2	6	11.9999
GGGG	chr1:165697042-165697334(-)$1	292	135	139	11.9999
!ddd	chr10:74767795-74768064(-)$1	269	111	115	11.9999
EEKK	chr10:5499474-5499764(+)$1	290	33	37	11.9999
hhhh	chr1:116947204-116947450(+)$1	246	102	106	11.9999
++++	chr5:42800079-42800314(-)$1	235	92	96	11.9999
ccc!	chr2:232577757-232578024(+)$1	267	64	68	11.9999
::::	chr12:106631607-106631831(-)$1	224	1	5	11.9999
FFGG	chr15:64430209-64430495(+)$1	286	11	15	11.9999
dddl	chr1:230838472-230838732(-)$1	260	124	128	11.9999
mmdd	chr14:69846801-69847066(-)$1	265	55	59	11.9999
:ddd	chr19:48886313-48886559(-)$1	246	197	201	11.9999
lllg	chr17:53470280-53470555(-)$1	275	82	86	11.9999
"eee	chr17:7076806-7077044(-)$1	238	193	197	11.9999
h]bb	chr18:56994982-56995225(-)$1	243	213	217	11.9999
GGGG	chr4:155525247-155525499(-)$1	252	131	135	11.9999
$$$c	chr14:39501783-39502017(-)$1	234	94	98	11.9999
::::	chr2:97525527-97525815(-)$1	288	36	40	11.9999
hhho	chr6:119500389-119500636(-)$1	247	38	42	11.9999
::::	chr17:38326997-38327254(+)$1	257	4	8	11.9999
dnnn	chr1:36770526-36770791(+)$1	265	112	116	11.9999
ooee	chr16:75611357-75611615(+)$1	258	55	59	11.9999
cc22	chr1:150937714-150937974(-)$1	260	185	189	11.9999
JVVV	chr4:155525329-155525564(-)$1	235	42	46	11.9999
::::	chr15:52843905-52844156(-)$1	251	1	5	11.9999
fffm	chr19:17513668-17513931(-)$1	263	88	92	11.9999
::::	chr1:23632729-23632977(-)$1	248	68	72	11.9999
eeee	chr6:145173812-145174096(+)$1	284	88	92	11.9999
iiii	chr2:85549638-85549884(-)$1	246	135	139	11.9999
bddd	chr18:3277956-3278215(+)$1	259	60	64	11.9999
rrrr	chr1:205683247-205683499(-)$1	252	99	103	11.9999
^^^^	chr12:124082193-124082449(+)$1	256	32	36	11.9999
ggmm	chr5:137891424-137891724(-)$1	300	96	100	11.9999
CCNN	chr16:56977608-56977860(+)$1	252	39	43	11.9999
d:::	chr7:128411252-128411501(+)$1	249	90	94	11.9999
bb44	chr11:2151691-2151912(-)$1	221	57	61	11.9999
EEEE	chr7:94298501-94298724(+)$1	223	32	36	11.9999
]bb]	chr5:96369772-96370015(+)$1	243	160	164	11.9999
fffl	chr7:103112618-103112862(-)$1	244	12	16	11.9999
::::	chr11:8704273-8704544(+)$1	271	95	99	11.9999
qqcc	chr3:5026609-5026877(+)$1	268	25	29	11.9999
DDRR	chr5:52782267-52782580(+)$1	313	60	64	11.9999
33hh	chr6:33172051-33172269(+)$1	218	103	107	11.9999
xxxx	chr19:13054725-13054988(+)$1	263	139	143	11.9999
fsss	chr7:44618426-44618672(-)$1	246	63	67	11.9999
22dd	chr8:17721914-17722195(-)$1	281	102	106	11.9999
E{CC	chr6:160526627-160526866(+)$1	239	17	21	11.9999
fff2	chr17:37884698-37884983(+)$1	285	69	73	11.9999
::::	chr10:114187114-114187424(+)$1	310	77	81	11.9999
CCLL	chr14:23303650-23303894(+)$1	244	18	22	11.9999
iiii	chr11:33163244-33163509(-)$1	265	178	182	11.9999
eeee	chr2:122096547-122096841(-)$1	294	23	27	11.9999
GGG:	chr15:52842671-52842918(-)$1	247	79	83	11.9999
HHHF	chr2:228681964-228682208(+)$1	244	6	10	11.9999
::::	chr17:70121735-70121947(+)$1	212	2	6	11.9999
C{CC	chr20:61576637-61576940(+)$1	303	7	11	11.9999
::::	chr14:53106699-53106940(-)$1	241	32	36	11.9999
fffu	chr6:163994654-163994909(+)$1	255	122	126	11.9999
::::	chr10:97366154-97366415(-)$1	261	3	7	11.9999
gggg	chr2:20648245-20648457(+)$1	212	56	60	11.9999
gggg	chr5:74657417-74657690(+)$1	273	151	155	11.9999
eeee	chr3:32938479-32938734(+)$1	255	51	55	11.9999
:EEE	chr4:122589136-122589408(-)$1	272	5	9	11.9999
ffpp	chr2:198351390-198351647(-)$1	257	194	198	11.9999
+++g	chr8:57875227-57875472(-)$1	245	82	86	11.9999
::::	chr7:103112365-103112621(-)$1	256	113	117	11.9999
iiii	chr20:10619516-10619733(-)$1	217	85	89	11.9999
EEEE	chr4:74321295-74321509(+)$1	214	195	199	11.9999
gggg	chr2:65315317-65315566(-)$1	249	141	145	11.9999
llle	chr4:88258162-88258461(-)$1	299	103	107	11.9999

#DB
...(	chr14:23239357-23239615(+)$1	1	8	12	11.9999
))))	chr4:74321376-74321587(+)$1	1	114	118	11.9999
))))	chr14:69254643-69254936(-)$1	1	117	121	11.9999
(((.	chr3:32933771-32934040(+)$1	1	47	51	11.9999
....	chr8:22278992-22279202(+)$1	1	58	62	11.9999
((((	chr6:114181938-114182186(+)$1	1	22	26	11.9999
....	chr17:37009850-37010070(-)$1	1	129	133	11.9999
...(	chr4:83345739-83345986(-)$1	1	3	7	11.9999
((((	chr2:101893454-101893685(-)$1	1	197	201	11.9999
....	chr2:102796065-102796379(+)$1	1	1	5	11.9999
....	chr17:80196816-80197059(+)$1	1	176	180	11.9999
.(((	chr17:48827968-48828209(+)$1	1	97	101	11.9999
(((.	chr17:30696720-30696976(+)$1	1	113	117	11.9999
....	chr17:74730958-74731185(-)$1	1	75	79	11.9999
))).	chr15:77241841-77242148(+)$1	1	137	141	11.9999
.)))	chr7:45932751-45932963(+)$1	1	87	91	11.9999
))))	chr7:103112421-103112687(-)$1	1	47	51	11.9999
..((	chr3:145787344-145787571(-)$1	1	2	6	11.9999
((((	chr1:165697042-165697334(-)$1	1	135	139	11.9999
.(((	chr10:74767795-74768064(-)$1	1	111	115	11.9999
((..	chr10:5499474-5499764(+)$1	1	33	37	11.9999
((((	chr1:116947204-116947450(+)$1	1	102	106	11.9999
....	chr5:42800079-42800314(-)$1	1	92	96	11.9999
(((.	chr2:232577757-232578024(+)$1	1	64	68	11.9999
....	chr12:106631607-106631831(-)$1	1	1	5	11.9999
((((	chr15:64430209-64430495(+)$1	1	11	15	11.9999
(((.	chr1:230838472-230838732(-)$1	1	124	128	11.9999
..))	chr14:69846801-69847066(-)$1	1	55	59	11.9999
.(((	chr19:48886313-48886559(-)$1	1	197	201	11.9999
...)	chr17:53470280-53470555(-)$1	1	82	86	11.9999
.(((	chr17:7076806-7077044(-)$1	1	193	197	11.9999
).))	chr18:56994982-56995225(-)$1	1	213	217	11.9999
((((	chr4:155525247-155525499(-)$1	1	131	135	11.9999
...(	chr14:39501783-39502017(-)$1	1	94	98	11.9999
....	chr2:97525527-97525815(-)$1	1	36	40	11.9999
(((.	chr6:119500389-119500636(-)$1	1	38	42	11.9999
....	chr17:38326997-38327254(+)$1	1	4	8	11.9999
(...	chr1:36770526-36770791(+)$1	1	112	116	11.9999
..))	chr16:75611357-75611615(+)$1	1	55	59	11.9999
))..	chr1:150937714-150937974(-)$1	1	185	189	11.9999
(...	chr4:155525329-155525564(-)$1	1	42	46	11.9999
....	chr15:52843905-52844156(-)$1	1	1	5	11.9999
(((.	chr19:17513668-17513931(-)$1	1	88	92	11.9999
....	chr1:23632729-23632977(-)$1	1	68	72	11.9999
))))	chr6:145173812-145174096(+)$1	1	88	92	11.9999
((((	chr2:85549638-85549884(-)$1	1	135	139	11.9999
((((	chr18:3277956-3278215(+)$1	1	60	64	11.9999
....	chr1:205683247-205683499(-)$1	1	99	103	11.9999
....	chr12:124082193-124082449(+)$1	1	32	36	11.9999
((..	chr5:137891424-137891724(-)$1	1	96	100	11.9999
((..	chr16:56977608-56977860(+)$1	1	39	43	11.9999
)...	chr7:128411252-128411501(+)$1	1	90	94	11.9999
))..	chr11:2151691-2151912(-)$1	1	57	61	11.9999
((((	chr7:94298501-94298724(+)$1	1	32	36	11.9999
.)).	chr5:96369772-96370015(+)$1	1	160	164	11.9999
(((.	chr7:103112618-103112862(-)$1	1	12	16	11.9999
....	chr11:8704273-8704544(+)$1	1	95	99	11.9999
..))	chr3:5026609-5026877(+)$1	1	25	29	11.9999
((..	chr5:52782267-52782580(+)$1	1	60	64	11.9999
..))	chr6:33172051-33172269(+)$1	1	103	107	11.9999
....	chr19:13054725-13054988(+)$1	1	139	143	11.9999
(...	chr7:44618426-44618672(-)$1	1	63	67	11.9999
..))	chr8:17721914-17722195(-)$1	1	102	106	11.9999
(.((	chr6:160526627-160526866(+)$1	1	17	21	11.9999
))).	chr17:37884698-37884983(+)$1	1	69	73	11.9999
....	chr10:114187114-114187424(+)$1	1	77	81	11.9999
((..	chr14:23303650-23303894(+)$1	1	18	22	11.9999
))))	chr11:33163244-33163509(-)$1	1	178	182	11.9999
((((	chr2:122096547-122096841(-)$1	1	23	27	11.9999
(((.	chr15:52842671-52842918(-)$1	1	79	83	11.9999
((((	chr2:228681964-228682208(+)$1	1	6	10	11.9999
....	chr17:70121735-70121947(+)$1	1	2	6	11.9999
(.((	chr20:61576637-61576940(+)$1	1	7	11	11.9999
....	chr14:53106699-53106940(-)$1	1	32	36	11.9999
(((.	chr6:163994654-163994909(+)$1	1	122	126	11.9999
....	chr10:97366154-97366415(-)$1	1	3	7	11.9999
))))	chr2:20648245-20648457(+)$1	1	56	60	11.9999
))))	chr5:74657417-74657690(+)$1	1	151	155	11.9999
((((	chr3:32938479-32938734(+)$1	1	51	55	11.9999
.(((	chr4:122589136-122589408(-)$1	1	5	9	11.9999
((..	chr2:198351390-198351647(-)$1	1	194	198	11.9999
...(	chr8:57875227-57875472(-)$1	1	82	86	11.9999
....	chr7:103112365-103112621(-)$1	1	113	117	11.9999
))))	chr20:10619516-10619733(-)$1	1	85	89	11.9999
))))	chr4:74321295-74321509(+)$1	1	195	199	11.9999
((((	chr2:65315317-65315566(-)$1	1	141	145	11.9999
...)	chr4:88258162-88258461(-)$1	1	103	107	11.9999

#PSSM
U : 0.96	u : 0.03	
G : 0.97	g : 0.02	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	

#score	1043.9999999999998
#seq	87
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_transcript_m3_run1.nuc.txt

#NT
GAAGA	chr19:3053642-3053907(-)$1	265	28	33	14.9999
GAAGA	chr1:16257305-16257553(+)$1	248	80	85	14.9999
GAAGA	chr18:9255445-9255700(+)$1	255	133	138	14.9999
GAAGA	chr2:152320763-152321017(+)$1	254	26	31	14.9999
GAAGA	chr7:150070029-150070311(+)$1	282	127	132	14.9999
GAAGA	chr2:203141063-203141333(+)$1	270	38	43	14.9999
GAAGA	chr20:47895401-47895635(+)$1	234	200	205	14.9999
GAAGA	chr3:186504525-186504741(+)$1	216	24	29	14.9999
GAAGA	chr9:37126768-37127058(+)$1	290	41	46	14.9999
GAAGA	chr8:94748104-94748359(-)$1	255	63	68	14.9999
GAAGA	chr13:92003172-92003413(+)$1	241	8	13	14.9999
GAAGA	chr12:76449740-76449948(-)$1	208	34	39	14.9999
GAAGA	chr11:65826885-65827139(+)$1	254	132	137	14.9999
GAAGA	chr16:70563348-70563578(+)$1	230	112	117	14.9999
GAAGA	chr11:125937749-125938007(+)$1	258	49	54	14.9999
GAAGA	chr9:127623675-127623925(-)$1	250	120	125	14.9999
GAAGA	chr17:37360812-37361058(+)$1	246	17	22	14.9999
gaaga	chr4:32016417-32016699(+)$1	282	44	49	14.9999
GAAGA	chr12:76449748-76449964(-)$1	216	50	55	14.9999
GAAGA	chr12:104333186-104333467(+)$1	281	175	180	14.9999
GAAGA	chr5:170814890-170815110(+)$1	220	65	70	14.9999
GAAGA	chr1:29505410-29505657(-)$1	247	17	22	14.9999
GAAGA	chr12:49048073-49048322(-)$1	249	33	38	14.9999
GAAGA	chr17:20801663-20801920(+)$1	257	223	228	14.9999
GAAGA	chr5:40832659-40832921(-)$1	262	74	79	14.9999
GAAGA	chr2:152322048-152322310(+)$1	262	19	24	14.9999
GAAGA	chr17:38556770-38556987(-)$1	217	105	110	14.9999
GAAGA	chr11:75111333-75111659(+)$1	326	108	113	14.9999
GAAGA	chr14:56083134-56083445(+)$1	311	197	202	14.9999
GAAGA	chr12:49048148-49048401(-)$1	253	112	117	14.9999
GAAGA	chr19:3980517-3980776(-)$1	259	229	234	14.9999
GAAGA	chr17:38562824-38563039(-)$1	215	146	151	14.9999
GAAGA	chr1:173834402-173834691(-)$1	289	54	59	14.9999
GAAGA	chr19:18392061-18392310(-)$1	249	150	155	14.9999
gaaga	chr7:107144923-107145206(-)$1	283	49	54	14.9999
GAAGA	chr2:232320426-232320719(-)$1	293	127	132	14.9999
GAAGA	chr3:186504495-186504725(+)$1	230	54	59	14.9999
GAAGA	chr17:20787732-20787987(+)$1	255	202	207	14.9999
GAAGA	chr22:49988772-49989033(-)$1	261	165	170	14.9999
GAAGA	chr1:29506021-29506296(-)$1	275	81	86	14.9999
GAAGA	chr11:10822934-10823161(-)$1	227	124	129	14.9999
GAAGA	chr10:70514848-70515083(+)$1	235	59	64	14.9999
GAAGA	chr3:37366590-37366863(+)$1	273	48	53	14.9999
GAAGA	chr3:186502533-186502753(+)$1	220	93	98	14.9999
GAAGA	chr3:37367401-37367694(+)$1	293	7	12	14.9999
GAAGA	chr12:76449711-76449917(-)$1	206	3	8	14.9999
gaaga	chr11:5478200-5478498(-)$1	298	137	142	14.9999
GAAGA	chr5:137896629-137896886(-)$1	257	163	168	14.9999
GAAGA	chr11:62622662-62622937(-)$1	275	21	26	14.9999
GAAGA	chr8:97243080-97243373(-)$1	293	70	75	14.9999
GAAGA	chr4:436009-436317(-)$1	308	75	80	14.9999
GAAGA	chr17:7480119-7480358(+)$1	239	1	6	14.9999

#otherMatches

#Struct PSSM
DYYEE	chr7:120897060-120897315(+)$1	255	239	244	14.9999
UUUUU	chr19:3053642-3053907(-)$1	265	28	33	14.9999
nnnnn	chr1:16257305-16257553(+)$1	248	80	85	14.9999
ii:::	chr18:9255445-9255700(+)$1	255	133	138	14.9999
:::::	chr2:152320763-152321017(+)$1	254	26	31	14.9999
:::::	chr7:150070029-150070311(+)$1	282	127	132	14.9999
fmmmm	chr2:203141063-203141333(+)$1	270	38	43	14.9999
GGGGG	chr20:47895401-47895635(+)$1	234	200	205	14.9999
EE:::	chr3:186504525-186504741(+)$1	216	24	29	14.9999
cccFF	chr9:37126768-37127058(+)$1	290	41	46	14.9999
::JJJ	chr8:94748104-94748359(-)$1	255	63	68	14.9999
DDDD:	chr13:92003172-92003413(+)$1	241	8	13	14.9999
[a[bb	chr12:76449740-76449948(-)$1	208	34	39	14.9999
cc]cc	chr11:65826885-65827139(+)$1	254	132	137	14.9999
7dddd	chr16:70563348-70563578(+)$1	230	112	117	14.9999
rrrrr	chr11:125937749-125938007(+)$1	258	49	54	14.9999
pppee	chr9:127623675-127623925(-)$1	250	120	125	14.9999
d::bb	chr17:37360812-37361058(+)$1	246	17	22	14.9999
====p	chr4:32016417-32016699(+)$1	282	44	49	14.9999
[a[bb	chr12:76449748-76449964(-)$1	216	50	55	14.9999
:::hh	chr12:104333186-104333467(+)$1	281	175	180	14.9999
qqqqq	chr5:170814890-170815110(+)$1	220	65	70	14.9999
BNNNN	chr1:29505410-29505657(-)$1	247	17	22	14.9999
!!===	chr12:49048073-49048322(-)$1	249	33	38	14.9999
hhhh2	chr17:20801663-20801920(+)$1	257	223	228	14.9999
gggg:	chr5:40832659-40832921(-)$1	262	74	79	14.9999
:::::	chr2:152322048-152322310(+)$1	262	19	24	14.9999
cc%%%	chr17:38556770-38556987(-)$1	217	105	110	14.9999
bb!!e	chr11:75111333-75111659(+)$1	326	108	113	14.9999
DD:dd	chr14:56083134-56083445(+)$1	311	197	202	14.9999
!!===	chr12:49048148-49048401(-)$1	253	112	117	14.9999
=====	chr19:3980517-3980776(-)$1	259	229	234	14.9999
d!!hh	chr17:38562824-38563039(-)$1	215	146	151	14.9999
:::ee	chr1:173834402-173834691(-)$1	289	54	59	14.9999
+++++	chr19:18392061-18392310(-)$1	249	150	155	14.9999
:::::	chr7:107144923-107145206(-)$1	283	49	54	14.9999
ggggg	chr2:232320426-232320719(-)$1	293	127	132	14.9999
:::::	chr3:186504495-186504725(+)$1	230	54	59	14.9999
bb]cc	chr17:20787732-20787987(+)$1	255	202	207	14.9999
::ddd	chr22:49988772-49989033(-)$1	261	165	170	14.9999
]ccc5	chr1:29506021-29506296(-)$1	275	81	86	14.9999
%%eee	chr11:10822934-10823161(-)$1	227	124	129	14.9999
ooccc	chr10:70514848-70515083(+)$1	235	59	64	14.9999
::FFF	chr3:37366590-37366863(+)$1	273	48	53	14.9999
DDDDB	chr3:186502533-186502753(+)$1	220	93	98	14.9999
:::::	chr3:37367401-37367694(+)$1	293	7	12	14.9999
::CCC	chr12:76449711-76449917(-)$1	206	3	8	14.9999
e22dd	chr11:5478200-5478498(-)$1	298	137	142	14.9999
eeeee	chr5:137896629-137896886(-)$1	257	163	168	14.9999
nnnnn	chr11:62622662-62622937(-)$1	275	21	26	14.9999
hhhhh	chr8:97243080-97243373(-)$1	293	70	75	14.9999
dd444	chr4:436009-436317(-)$1	308	75	80	14.9999
DDDee	chr17:7480119-7480358(+)$1	239	1	6	14.9999

#DB
)..))	chr7:120897060-120897315(+)$1	1	239	244	14.9999
.....	chr19:3053642-3053907(-)$1	1	28	33	14.9999
.....	chr1:16257305-16257553(+)$1	1	80	85	14.9999
))...	chr18:9255445-9255700(+)$1	1	133	138	14.9999
.....	chr2:152320763-152321017(+)$1	1	26	31	14.9999
.....	chr7:150070029-150070311(+)$1	1	127	132	14.9999
(....	chr2:203141063-203141333(+)$1	1	38	43	14.9999
)))))	chr20:47895401-47895635(+)$1	1	200	205	14.9999
((...	chr3:186504525-186504741(+)$1	1	24	29	14.9999
)))((	chr9:37126768-37127058(+)$1	1	41	46	14.9999
..(((	chr8:94748104-94748359(-)$1	1	63	68	14.9999
((((.	chr13:92003172-92003413(+)$1	1	8	13	14.9999
.(.((	chr12:76449740-76449948(-)$1	1	34	39	14.9999
)).))	chr11:65826885-65827139(+)$1	1	132	137	14.9999
.))))	chr16:70563348-70563578(+)$1	1	112	117	14.9999
.....	chr11:125937749-125938007(+)$1	1	49	54	14.9999
...))	chr9:127623675-127623925(-)$1	1	120	125	14.9999
)..((	chr17:37360812-37361058(+)$1	1	17	22	14.9999
((((.	chr4:32016417-32016699(+)$1	1	44	49	14.9999
.(.((	chr12:76449748-76449964(-)$1	1	50	55	14.9999
...((	chr12:104333186-104333467(+)$1	1	175	180	14.9999
.....	chr5:170814890-170815110(+)$1	1	65	70	14.9999
(....	chr1:29505410-29505657(-)$1	1	17	22	14.9999
..(((	chr12:49048073-49048322(-)$1	1	33	38	14.9999
)))).	chr17:20801663-20801920(+)$1	1	223	228	14.9999
)))).	chr5:40832659-40832921(-)$1	1	74	79	14.9999
.....	chr2:152322048-152322310(+)$1	1	19	24	14.9999
((...	chr17:38556770-38556987(-)$1	1	105	110	14.9999
((..(	chr11:75111333-75111659(+)$1	1	108	113	14.9999
)).((	chr14:56083134-56083445(+)$1	1	197	202	14.9999
..(((	chr12:49048148-49048401(-)$1	1	112	117	14.9999
)))))	chr19:3980517-3980776(-)$1	1	229	234	14.9999
(..((	chr17:38562824-38563039(-)$1	1	146	151	14.9999
...((	chr1:173834402-173834691(-)$1	1	54	59	14.9999
.....	chr19:18392061-18392310(-)$1	1	150	155	14.9999
.....	chr7:107144923-107145206(-)$1	1	49	54	14.9999
)))))	chr2:232320426-232320719(-)$1	1	127	132	14.9999
.....	chr3:186504495-186504725(+)$1	1	54	59	14.9999
)).))	chr17:20787732-20787987(+)$1	1	202	207	14.9999
..(((	chr22:49988772-49989033(-)$1	1	165	170	14.9999
.))).	chr1:29506021-29506296(-)$1	1	81	86	14.9999
..(((	chr11:10822934-10823161(-)$1	1	124	129	14.9999
..)))	chr10:70514848-70515083(+)$1	1	59	64	14.9999
..(((	chr3:37366590-37366863(+)$1	1	48	53	14.9999
(((((	chr3:186502533-186502753(+)$1	1	93	98	14.9999
.....	chr3:37367401-37367694(+)$1	1	7	12	14.9999
..(((	chr12:76449711-76449917(-)$1	1	3	8	14.9999
)..))	chr11:5478200-5478498(-)$1	1	137	142	14.9999
(((((	chr5:137896629-137896886(-)$1	1	163	168	14.9999
.....	chr11:62622662-62622937(-)$1	1	21	26	14.9999
)))))	chr8:97243080-97243373(-)$1	1	70	75	14.9999
))...	chr4:436009-436317(-)$1	1	75	80	14.9999
(((((	chr17:7480119-7480358(+)$1	1	1	6	14.9999

#PSSM
G : 0.92	g : 0.07	
A : 0.92	a : 0.07	
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	
A : 0.92	a : 0.07	

#score	794.9999999999999
#seq	53
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_CDS_m1_run2.nuc.txt

#NT
UCAG	chr11:134118111-134118460(-)$1	349	185	189	11.9999
UCAG	chr2:55461984-55462195(+)$1	211	138	142	11.9999
UCAG	chr2:55462463-55462674(+)$1	211	52	56	11.9999
UCAG	chr1:6021780-6022093(-)$1	313	46	50	11.9999
UCAG	chr21:34925898-34926172(+)$1	274	1	5	11.9999
UCAG	chr11:77780809-77781123(-)$1	314	264	268	11.9999
UCAG	chr1:247320212-247320506(-)$1	294	2	6	11.9999
UCAG	chr12:54677500-54677722(+)$1	222	58	62	11.9999
UCAG	chr4:109543623-109543837(+)$1	214	102	106	11.9999
UCAG	chr3:47468885-47469169(-)$1	284	20	24	11.9999
UCAG	chr17:1553861-1554121(-)$1	260	46	50	11.9999
UCAG	chr4:39459940-39460162(-)$1	222	98	102	11.9999
UCAG	chr12:98994911-98995157(+)$1	246	33	37	11.9999
UCAG	chr6:26196981-26197220(-)$1	239	196	200	11.9999
UCAG	chr12:98994864-98995086(+)$1	222	80	84	11.9999
UCAG	chr11:62291332-62291596(-)$1	264	152	156	11.9999
UCAG	chr11:32608522-32608791(+)$1	269	5	9	11.9999
UCAG	chr17:45741461-45741713(+)$1	252	23	27	11.9999
UCAG	chr6:26033656-26033891(-)$1	235	11	15	11.9999
UCAG	chr7:12373004-12373266(-)$1	262	181	185	11.9999
UCAG	chr3:47469976-47470241(-)$1	265	43	47	11.9999
UCAG	chr16:68156369-68156661(+)$1	292	197	201	11.9999
UCAG	chr2:55461213-55461428(+)$1	215	54	58	11.9999
UCAG	chr15:64791853-64792163(+)$1	310	137	141	11.9999
UCAG	chr3:101404610-101404863(-)$1	253	34	38	11.9999
UCAG	chr10:71973164-71973444(-)$1	280	95	99	11.9999
UCAG	chr18:43671547-43671837(-)$1	290	178	182	11.9999
UCAG	chr21:46945664-46945966(-)$1	302	90	94	11.9999
UCAG	chr4:39456087-39456317(-)$1	230	58	62	11.9999
UCAG	chr16:66836727-66837015(-)$1	288	83	87	11.9999
UCAG	chr9:125048224-125048526(+)$1	302	253	257	11.9999
UCAG	chr16:89006523-89006769(-)$1	246	64	68	11.9999
UCAG	chr1:182856406-182856640(+)$1	234	175	179	11.9999
UCAG	chr10:103546064-103546332(-)$1	268	201	205	11.9999
UCAG	chr14:92583744-92584087(-)$1	343	120	124	11.9999
UCAG	chr6:26027072-26027312(-)$1	240	152	156	11.9999
UCAG	chr9:115337208-115337564(+)$1	356	113	117	11.9999
UCAG	chr16:68156261-68156557(+)$1	296	104	108	11.9999
UCAG	chr16:68156826-68157112(+)$1	286	34	38	11.9999
UCAG	chrX:118604909-118605165(+)$1	256	50	54	11.9999
UCAG	chr12:98995189-98995463(+)$1	274	46	50	11.9999
UCAG	chr9:127115691-127115981(-)$1	290	111	115	11.9999
UCAG	chr17:65739913-65740292(+)$1	379	156	160	11.9999
UCAG	chr16:56448073-56448346(-)$1	273	47	51	11.9999
UCAG	chr16:21991788-21992083(+)$1	295	19	23	11.9999
UCAG	chr3:141644253-141644530(+)$1	277	148	152	11.9999
UCAG	chr1:247320316-247320616(-)$1	300	103	107	11.9999
UCAG	chr4:87967816-87968193(+)$1	377	26	30	11.9999
UCAG	chr6:27114793-27115050(+)$1	257	95	99	11.9999
UCAG	chr17:36909305-36909558(+)$1	253	26	30	11.9999
UCAG	chr10:103550659-103550903(-)$1	244	81	85	11.9999
UCAG	chr6:31805017-31805291(+)$1	274	146	150	11.9999
UCAG	chr5:130495122-130495394(-)$1	272	13	17	11.9999
UCAG	chr13:29252090-29252402(+)$1	312	77	81	11.9999
UCAG	chr2:168726232-168726500(-)$1	268	205	209	11.9999
UCAG	chr16:2820925-2821163(+)$1	238	209	213	11.9999
UCAG	chr6:4892091-4892378(+)$1	287	186	190	11.9999
UCAG	chr9:75773340-75773597(+)$1	257	123	127	11.9999
UCAG	chr16:2871306-2871557(+)$1	251	40	44	11.9999
UCAG	chr15:64791680-64791938(+)$1	258	91	95	11.9999
UCAG	chr11:75113303-75113549(+)$1	246	40	44	11.9999
UCAG	chr1:161183859-161184116(+)$1	257	156	160	11.9999
UCAG	chr3:169866827-169867132(-)$1	305	43	47	11.9999
UCAG	chr6:170844123-170844436(-)$1	313	94	98	11.9999
UCAG	chr8:37732595-37732895(-)$1	300	286	290	11.9999
UCAG	chr4:73950929-73951201(-)$1	272	115	119	11.9999
UCAG	chr2:55460416-55460654(+)$1	238	0	4	11.9999
UCAG	chr6:27101127-27101407(+)$1	280	58	62	11.9999
UCAG	chr4:73956757-73957070(-)$1	313	32	36	11.9999
UCAG	chr4:73957531-73957802(-)$1	271	148	152	11.9999
UCAG	chr6:74227652-74227854(-)$1	202	83	87	11.9999
UCAG	chr15:91503041-91503292(+)$1	251	84	88	11.9999
UCAG	chr12:98994886-98995111(+)$1	225	58	62	11.9999
UCAG	chr2:62099491-62099717(-)$1	226	131	135	11.9999
UCAG	chr2:101622318-101622564(+)$1	246	75	79	11.9999
UCAG	chr8:101725249-101725481(-)$1	232	182	186	11.9999
UCAG	chr6:27775855-27776111(+)$1	256	93	97	11.9999

#otherMatches

#Struct PSSM
YYCC	chr16:68156620-68156870(+)$1	250	120	124	11.9999
hccc	chr11:134118111-134118460(-)$1	349	185	189	11.9999
eeee	chr2:55461984-55462195(+)$1	211	138	142	11.9999
iiii	chr2:55462463-55462674(+)$1	211	52	56	11.9999
iiii	chr1:6021780-6022093(-)$1	313	46	50	11.9999
CCKK	chr21:34925898-34926172(+)$1	274	1	5	11.9999
EEEE	chr11:77780809-77781123(-)$1	314	264	268	11.9999
::::	chr1:247320212-247320506(-)$1	294	2	6	11.9999
::::	chr12:54677500-54677722(+)$1	222	58	62	11.9999
""dd	chr4:109543623-109543837(+)$1	214	102	106	11.9999
MMMH	chr3:47468885-47469169(-)$1	284	20	24	11.9999
mmmb	chr17:1553861-1554121(-)$1	260	46	50	11.9999
cc[e	chr4:39459940-39460162(-)$1	222	98	102	11.9999
ffff	chr12:98994911-98995157(+)$1	246	33	37	11.9999
mmff	chr6:26196981-26197220(-)$1	239	196	200	11.9999
ffff	chr12:98994864-98995086(+)$1	222	80	84	11.9999
#ddd	chr11:62291332-62291596(-)$1	264	152	156	11.9999
:::f	chr11:32608522-32608791(+)$1	269	5	9	11.9999
dddd	chr17:45741461-45741713(+)$1	252	23	27	11.9999
FFdd	chr6:26033656-26033891(-)$1	235	11	15	11.9999
====	chr7:12373004-12373266(-)$1	262	181	185	11.9999
FFFF	chr3:47469976-47470241(-)$1	265	43	47	11.9999
4444	chr16:68156369-68156661(+)$1	292	197	201	11.9999
gccc	chr2:55461213-55461428(+)$1	215	54	58	11.9999
[bbn	chr15:64791853-64792163(+)$1	310	137	141	11.9999
G:DD	chr3:101404610-101404863(-)$1	253	34	38	11.9999
2ddd	chr10:71973164-71973444(-)$1	280	95	99	11.9999
gg22	chr18:43671547-43671837(-)$1	290	178	182	11.9999
::::	chr21:46945664-46945966(-)$1	302	90	94	11.9999
EEEE	chr4:39456087-39456317(-)$1	230	58	62	11.9999
d!!f	chr16:66836727-66837015(-)$1	288	83	87	11.9999
pfff	chr9:125048224-125048526(+)$1	302	253	257	11.9999
bb[e	chr16:89006523-89006769(-)$1	246	64	68	11.9999
eee]	chr1:182856406-182856640(+)$1	234	175	179	11.9999
hhh:	chr10:103546064-103546332(-)$1	268	201	205	11.9999
qqqq	chr14:92583744-92584087(-)$1	343	120	124	11.9999
[ggg	chr6:26027072-26027312(-)$1	240	152	156	11.9999
e[bb	chr9:115337208-115337564(+)$1	356	113	117	11.9999
ee22	chr16:68156261-68156557(+)$1	296	104	108	11.9999
ddII	chr16:68156826-68157112(+)$1	286	34	38	11.9999
{CCC	chrX:118604909-118605165(+)$1	256	50	54	11.9999
nnff	chr12:98995189-98995463(+)$1	274	46	50	11.9999
eeee	chr9:127115691-127115981(-)$1	290	111	115	11.9999
FFFF	chr17:65739913-65740292(+)$1	379	156	160	11.9999
dddd	chr16:56448073-56448346(-)$1	273	47	51	11.9999
IIII	chr16:21991788-21992083(+)$1	295	19	23	11.9999
IIII	chr3:141644253-141644530(+)$1	277	148	152	11.9999
eeuu	chr1:247320316-247320616(-)$1	300	103	107	11.9999
HHHH	chr4:87967816-87968193(+)$1	377	26	30	11.9999
nnnn	chr6:27114793-27115050(+)$1	257	95	99	11.9999
oood	chr17:36909305-36909558(+)$1	253	26	30	11.9999
qfff	chr10:103550659-103550903(-)$1	244	81	85	11.9999
HHHc	chr6:31805017-31805291(+)$1	274	146	150	11.9999
EEEE	chr5:130495122-130495394(-)$1	272	13	17	11.9999
555f	chr13:29252090-29252402(+)$1	312	77	81	11.9999
dd[h	chr2:168726232-168726500(-)$1	268	205	209	11.9999
ffff	chr16:2820925-2821163(+)$1	238	209	213	11.9999
ddnn	chr6:4892091-4892378(+)$1	287	186	190	11.9999
ssss	chr9:75773340-75773597(+)$1	257	123	127	11.9999
[fff	chr16:2871306-2871557(+)$1	251	40	44	11.9999
eeee	chr15:64791680-64791938(+)$1	258	91	95	11.9999
ll==	chr11:75113303-75113549(+)$1	246	40	44	11.9999
cc]h	chr1:161183859-161184116(+)$1	257	156	160	11.9999
RRRR	chr3:169866827-169867132(-)$1	305	43	47	11.9999
[ddd	chr6:170844123-170844436(-)$1	313	94	98	11.9999
ff::	chr8:37732595-37732895(-)$1	300	286	290	11.9999
::::	chr4:73950929-73951201(-)$1	272	115	119	11.9999
:fff	chr2:55460416-55460654(+)$1	238	0	4	11.9999
:::c	chr6:27101127-27101407(+)$1	280	58	62	11.9999
$ccc	chr4:73956757-73957070(-)$1	313	32	36	11.9999
2fff	chr4:73957531-73957802(-)$1	271	148	152	11.9999
gggg	chr6:74227652-74227854(-)$1	202	83	87	11.9999
llee	chr15:91503041-91503292(+)$1	251	84	88	11.9999
ffff	chr12:98994886-98995111(+)$1	225	58	62	11.9999
fbbg	chr2:62099491-62099717(-)$1	226	131	135	11.9999
eee'	chr2:101622318-101622564(+)$1	246	75	79	11.9999
gggg	chr8:101725249-101725481(-)$1	232	182	186	11.9999
:::c	chr6:27775855-27776111(+)$1	256	93	97	11.9999

#DB
..))	chr16:68156620-68156870(+)$1	1	120	124	11.9999
))))	chr11:134118111-134118460(-)$1	1	185	189	11.9999
((((	chr2:55461984-55462195(+)$1	1	138	142	11.9999
))))	chr2:55462463-55462674(+)$1	1	52	56	11.9999
))))	chr1:6021780-6022093(-)$1	1	46	50	11.9999
((..	chr21:34925898-34926172(+)$1	1	1	5	11.9999
))))	chr11:77780809-77781123(-)$1	1	264	268	11.9999
....	chr1:247320212-247320506(-)$1	1	2	6	11.9999
....	chr12:54677500-54677722(+)$1	1	58	62	11.9999
..((	chr4:109543623-109543837(+)$1	1	102	106	11.9999
...(	chr3:47468885-47469169(-)$1	1	20	24	11.9999
...)	chr17:1553861-1554121(-)$1	1	46	50	11.9999
((.(	chr4:39459940-39460162(-)$1	1	98	102	11.9999
((((	chr12:98994911-98995157(+)$1	1	33	37	11.9999
..))	chr6:26196981-26197220(-)$1	1	196	200	11.9999
((((	chr12:98994864-98995086(+)$1	1	80	84	11.9999
.(((	chr11:62291332-62291596(-)$1	1	152	156	11.9999
...(	chr11:32608522-32608791(+)$1	1	5	9	11.9999
))))	chr17:45741461-45741713(+)$1	1	23	27	11.9999
((((	chr6:26033656-26033891(-)$1	1	11	15	11.9999
))))	chr7:12373004-12373266(-)$1	1	181	185	11.9999
((((	chr3:47469976-47470241(-)$1	1	43	47	11.9999
....	chr16:68156369-68156661(+)$1	1	197	201	11.9999
)(((	chr2:55461213-55461428(+)$1	1	54	58	11.9999
.((.	chr15:64791853-64792163(+)$1	1	137	141	11.9999
(.((	chr3:101404610-101404863(-)$1	1	34	38	11.9999
.)))	chr10:71973164-71973444(-)$1	1	95	99	11.9999
))..	chr18:43671547-43671837(-)$1	1	178	182	11.9999
....	chr21:46945664-46945966(-)$1	1	90	94	11.9999
((((	chr4:39456087-39456317(-)$1	1	58	62	11.9999
(..(	chr16:66836727-66837015(-)$1	1	83	87	11.9999
.)))	chr9:125048224-125048526(+)$1	1	253	257	11.9999
((.(	chr16:89006523-89006769(-)$1	1	64	68	11.9999
))).	chr1:182856406-182856640(+)$1	1	175	179	11.9999
))).	chr10:103546064-103546332(-)$1	1	201	205	11.9999
....	chr14:92583744-92584087(-)$1	1	120	124	11.9999
.(((	chr6:26027072-26027312(-)$1	1	152	156	11.9999
(.((	chr9:115337208-115337564(+)$1	1	113	117	11.9999
))..	chr16:68156261-68156557(+)$1	1	104	108	11.9999
))((	chr16:68156826-68157112(+)$1	1	34	38	11.9999
.(((	chrX:118604909-118605165(+)$1	1	50	54	11.9999
..))	chr12:98995189-98995463(+)$1	1	46	50	11.9999
((((	chr9:127115691-127115981(-)$1	1	111	115	11.9999
((((	chr17:65739913-65740292(+)$1	1	156	160	11.9999
((((	chr16:56448073-56448346(-)$1	1	47	51	11.9999
((((	chr16:21991788-21992083(+)$1	1	19	23	11.9999
))))	chr3:141644253-141644530(+)$1	1	148	152	11.9999
((..	chr1:247320316-247320616(-)$1	1	103	107	11.9999
((((	chr4:87967816-87968193(+)$1	1	26	30	11.9999
....	chr6:27114793-27115050(+)$1	1	95	99	11.9999
...)	chr17:36909305-36909558(+)$1	1	26	30	11.9999
.)))	chr10:103550659-103550903(-)$1	1	81	85	11.9999
)))(	chr6:31805017-31805291(+)$1	1	146	150	11.9999
((((	chr5:130495122-130495394(-)$1	1	13	17	11.9999
...)	chr13:29252090-29252402(+)$1	1	77	81	11.9999
((.(	chr2:168726232-168726500(-)$1	1	205	209	11.9999
((((	chr16:2820925-2821163(+)$1	1	209	213	11.9999
((..	chr6:4892091-4892378(+)$1	1	186	190	11.9999
....	chr9:75773340-75773597(+)$1	1	123	127	11.9999
.(((	chr16:2871306-2871557(+)$1	1	40	44	11.9999
))))	chr15:64791680-64791938(+)$1	1	91	95	11.9999
..))	chr11:75113303-75113549(+)$1	1	40	44	11.9999
)).)	chr1:161183859-161184116(+)$1	1	156	160	11.9999
....	chr3:169866827-169867132(-)$1	1	43	47	11.9999
.(((	chr6:170844123-170844436(-)$1	1	94	98	11.9999
))..	chr8:37732595-37732895(-)$1	1	286	290	11.9999
....	chr4:73950929-73951201(-)$1	1	115	119	11.9999
.(((	chr2:55460416-55460654(+)$1	1	0	4	11.9999
...(	chr6:27101127-27101407(+)$1	1	58	62	11.9999
.(((	chr4:73956757-73957070(-)$1	1	32	36	11.9999
.)))	chr4:73957531-73957802(-)$1	1	148	152	11.9999
))))	chr6:74227652-74227854(-)$1	1	83	87	11.9999
..))	chr15:91503041-91503292(+)$1	1	84	88	11.9999
((((	chr12:98994886-98995111(+)$1	1	58	62	11.9999
((((	chr2:62099491-62099717(-)$1	1	131	135	11.9999
(((.	chr2:101622318-101622564(+)$1	1	75	79	11.9999
((((	chr8:101725249-101725481(-)$1	1	182	186	11.9999
...(	chr6:27775855-27776111(+)$1	1	93	97	11.9999

#PSSM
U : 0.99	
C : 0.99	
A : 0.99	
G : 0.99	

#score	935.9999999999995
#seq	78
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_UTR_m2_run1.nuc.txt

#NT
AACUAUAAGUUAUUUGCUCAAGGGUGUAAUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCU	chr11:93464154-93464361(-)$1	207	67	138	213.0000
AACUAUAAGUUAUUUGCUCAAGGGUGUAAUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCU	chr11:93464107-93464311(-)$1	204	17	88	213.0000
AACUAUAAGUUAUUUGCUCAAGGGUGUAAUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCU	chr11:93464123-93464327(-)$1	204	33	104	213.0000
AACUAUAAGUUAUUUGCUCAAGGGUGUAAUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCU	chr11:93464113-93464323(-)$1	210	29	100	213.0000
AACUAUAAGUUAUUUGCUCAAGGGUGUAAUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCU	chr11:93464134-93464354(-)$1	220	60	131	213.0000
AACUAUAAGUUAUUUGCUCAAGGGUGUAAUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCU	chr11:93464097-93464302(-)$1	205	8	79	213.0000
AACUAUAAGUUAUUUGCUCAAGGGUGUAAUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCU	chr11:93464102-93464307(-)$1	205	13	84	213.0000
AACUAUAAGUUAUUUGCUCAAGGGUGUAAUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCU	chr11:93464161-93464366(-)$1	205	72	143	213.0000

#otherMatches

#Struct PSSM
dddd4444==========::::::::::hhhhhhhh!!ccc[ccc####ddddoooooodddd55555ccc	chr11:93464127-93464334(-)$1	207	40	111	213.0000
::::GGGGGGGKKEEEEEEEEEE:::::hhhhhhhh!!ccc[ccc####ddddoooooodddd55555ccc	chr11:93464154-93464361(-)$1	207	67	138	213.0000
eeeellleeeee::cccqqqqqqqqccchhhhhhhh!!ccc[ccc####ddddoooooodddd55555ccc	chr11:93464107-93464311(-)$1	204	17	88	213.0000
dddd4444==========::::::::::hhhhhhhh!!ccc[ccc####ddddoooooodddd55555ccc	chr11:93464123-93464327(-)$1	204	33	104	213.0000
dddd4444==========:::::DDDD:hhhhhhhh!!ccc[ccc####ddddoooooodddd55555ccc	chr11:93464113-93464323(-)$1	210	29	100	213.0000
ffffff::GGGGGGG|||||||EEEEE:hhhhhhhh!!ccc[ccc####ddddoooooodddd55555ccc	chr11:93464134-93464354(-)$1	220	60	131	213.0000
eeeellleeeee:DDDD:::::::::::hhhhhhhh!!ccc[ccc####ddddoooooodddd55555ccc	chr11:93464097-93464302(-)$1	205	8	79	213.0000
eeeellleeeee::cccqqqqqqqqccchhhhhhhh!!ccc[ccc####ddddoooooodddd55555ccc	chr11:93464102-93464307(-)$1	205	13	84	213.0000
dddd4444==========:::ccc####hhhhhhhh!!ccc[ccc####ddddoooooodddd55555ccc	chr11:93464161-93464366(-)$1	205	72	143	213.0000

#DB
))))....))))))))))..........((((((((..(((.(((....((((......)))).....)))	chr11:93464127-93464334(-)$1	1	40	111	213.0000
....(((((((..((((((((((.....((((((((..(((.(((....((((......)))).....)))	chr11:93464154-93464361(-)$1	1	67	138	213.0000
((((...)))))..(((........)))((((((((..(((.(((....((((......)))).....)))	chr11:93464107-93464311(-)$1	1	17	88	213.0000
))))....))))))))))..........((((((((..(((.(((....((((......)))).....)))	chr11:93464123-93464327(-)$1	1	33	104	213.0000
))))....)))))))))).....((((.((((((((..(((.(((....((((......)))).....)))	chr11:93464113-93464323(-)$1	1	29	100	213.0000
))))))..))))))).......))))).((((((((..(((.(((....((((......)))).....)))	chr11:93464134-93464354(-)$1	1	60	131	213.0000
((((...))))).((((...........((((((((..(((.(((....((((......)))).....)))	chr11:93464097-93464302(-)$1	1	8	79	213.0000
((((...)))))..(((........)))((((((((..(((.(((....((((......)))).....)))	chr11:93464102-93464307(-)$1	1	13	84	213.0000
))))....))))))))))...(((....((((((((..(((.(((....((((......)))).....)))	chr11:93464161-93464366(-)$1	1	72	143	213.0000

#PSSM
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	

#score	1917.0000000000002
#seq	9
#width	71
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_transcript_m2_run2.nuc.txt

#NT
CUGU	chr7:134625853-134626091(+)$1	238	163	167	11.9999
CUGU	chr17:7794164-7794456(+)$1	292	30	34	11.9999
CUGU	chr17:62499222-62499477(-)$1	255	21	25	11.9999
CUGU	chr2:54870019-54870226(+)$1	207	94	98	11.9999
CUGU	chr7:107569468-107569748(-)$1	280	75	79	11.9999
CUGU	chr12:104333209-104333432(+)$1	223	87	91	11.9999
CUGU	chr20:61537137-61537439(-)$1	302	6	10	11.9999
CUGU	chr6:7579656-7579937(+)$1	281	146	150	11.9999
CUGU	chr5:170827786-170828029(+)$1	243	8	12	11.9999
CUGU	chr2:216256311-216256544(-)$1	233	7	11	11.9999
CUGU	chr19:5594006-5594290(-)$1	284	89	93	11.9999
CUGU	chr20:36365705-36365987(+)$1	282	35	39	11.9999
CUGU	chr6:56392299-56392573(-)$1	274	184	188	11.9999
CUGU	chr1:236966661-236966998(+)$1	337	315	319	11.9999
CUGU	chr11:68331763-68332014(+)$1	251	230	234	11.9999
CUGU	chr2:21258355-21258557(-)$1	202	15	19	11.9999
CUGU	chr10:79800297-79800545(+)$1	248	107	111	11.9999
CUGU	chr12:56495502-56495799(+)$1	297	41	45	11.9999
CUGU	chr2:54880644-54880922(+)$1	278	220	224	11.9999
CUGU	chr2:198273042-198273348(-)$1	306	262	266	11.9999
CUGU	chr1:39815080-39815346(+)$1	266	92	96	11.9999
CUGU	chr11:129992099-129992371(+)$1	272	7	11	11.9999
CUGU	chr21:34921820-34922082(+)$1	262	207	211	11.9999
CUGU	chr2:102448112-102448407(+)$1	295	103	107	11.9999
CUGU	chr2:55461228-55461440(+)$1	212	114	118	11.9999
CUGU	chr4:100522708-100522954(+)$1	246	40	44	11.9999
CUGU	chrX:76936911-76937186(-)$1	275	121	125	11.9999
CUGU	chr17:33932667-33932955(+)$1	288	80	84	11.9999
CUGU	chr11:61732425-61732677(-)$1	252	101	105	11.9999
CUGU	chr1:24022184-24022420(+)$1	236	24	28	11.9999
CUGU	chr5:75996813-75997093(+)$1	280	69	73	11.9999
CUGU	chr2:21258357-21258570(-)$1	213	28	32	11.9999
CUGU	chr14:39648330-39648541(+)$1	211	48	52	11.9999
CUGU	chr11:129992294-129992508(+)$1	214	183	187	11.9999
CUGU	chr8:27462727-27462953(-)$1	226	77	81	11.9999
CUGU	chr7:2394535-2394884(+)$1	349	319	323	11.9999
CUGU	chr15:79184453-79184761(+)$1	308	86	90	11.9999
CUGU	chr21:40190362-40190627(+)$1	265	154	158	11.9999
CUGU	chr10:101590372-101590612(+)$1	240	31	35	11.9999
CUGU	chr2:11364422-11364671(-)$1	249	49	53	11.9999
CUGU	chr6:7580930-7581210(+)$1	280	141	145	11.9999
CUGU	chr17:72205841-72206085(+)$1	244	147	151	11.9999
CUGU	chr1:43220641-43220940(-)$1	299	267	271	11.9999
CUGU	chr6:44220722-44220950(+)$1	228	3	7	11.9999
CUGU	chr6:168275914-168276228(+)$1	314	282	286	11.9999
CUGU	chr9:116823655-116823896(-)$1	241	104	108	11.9999
CUGU	chr1:70716270-70716569(+)$1	299	129	133	11.9999
CUGU	chr6:35837957-35838233(-)$1	276	119	123	11.9999
CUGU	chr4:74313134-74313348(+)$1	214	35	39	11.9999
CUGU	chr11:57569450-57569764(+)$1	314	81	85	11.9999
CUGU	chr9:711736-711968(+)$1	232	184	188	11.9999
CUGU	chr2:21235021-21235280(-)$1	259	47	51	11.9999
CUGU	chr3:52834455-52834720(+)$1	265	13	17	11.9999
CUGU	chr2:63170848-63171078(+)$1	230	38	42	11.9999
CUGU	chr4:174253015-174253343(-)$1	328	220	224	11.9999
CUGU	chr12:46760760-46761021(-)$1	261	53	57	11.9999
CUGU	chr18:47016786-47017022(-)$1	236	45	49	11.9999
CUGU	chrX:70517191-70517412(+)$1	221	20	24	11.9999
cugu	chr1:245023559-245023803(-)$1	244	217	221	11.9999
CUGU	chr2:32702362-32702629(+)$1	267	229	233	11.9999
CUGU	chr2:232325171-232325375(-)$1	204	103	107	11.9999
CUGU	chr2:85778930-85779204(-)$1	274	7	11	11.9999
CUGU	chr1:52293367-52293642(-)$1	275	163	167	11.9999
CUGU	chr2:21263713-21263932(-)$1	219	208	212	11.9999
CUGU	chr1:45243208-45243465(+)$1	257	67	71	11.9999
CUGU	chr20:39725761-39725998(+)$1	237	223	227	11.9999
CUGU	chr12:26864040-26864300(-)$1	260	32	36	11.9999
CUGU	chr2:39234070-39234331(-)$1	261	35	39	11.9999
CUGU	chrX:20190763-20191050(-)$1	287	134	138	11.9999
CUGU	chr19:51856278-51856541(-)$1	263	160	164	11.9999

#otherMatches

#Struct PSSM
eeee	chr11:57563945-57564234(+)$1	289	2	6	11.9999
eee]	chr7:134625853-134626091(+)$1	238	163	167	11.9999
fppp	chr17:7794164-7794456(+)$1	292	30	34	11.9999
mmmm	chr17:62499222-62499477(-)$1	255	21	25	11.9999
dddd	chr2:54870019-54870226(+)$1	207	94	98	11.9999
:EEE	chr7:107569468-107569748(-)$1	280	75	79	11.9999
::::	chr12:104333209-104333432(+)$1	223	87	91	11.9999
::::	chr20:61537137-61537439(-)$1	302	6	10	11.9999
hhhh	chr6:7579656-7579937(+)$1	281	146	150	11.9999
"""c	chr5:170827786-170828029(+)$1	243	8	12	11.9999
HHHH	chr2:216256311-216256544(-)$1	233	7	11	11.9999
eeee	chr19:5594006-5594290(-)$1	284	89	93	11.9999
gggg	chr20:36365705-36365987(+)$1	282	35	39	11.9999
BB}G	chr6:56392299-56392573(-)$1	274	184	188	11.9999
:ccc	chr1:236966661-236966998(+)$1	337	315	319	11.9999
ZHHH	chr11:68331763-68332014(+)$1	251	230	234	11.9999
LCCC	chr2:21258355-21258557(-)$1	202	15	19	11.9999
FKKE	chr10:79800297-79800545(+)$1	248	107	111	11.9999
eeee	chr12:56495502-56495799(+)$1	297	41	45	11.9999
d%%%	chr2:54880644-54880922(+)$1	278	220	224	11.9999
:eee	chr2:198273042-198273348(-)$1	306	262	266	11.9999
ddd:	chr1:39815080-39815346(+)$1	266	92	96	11.9999
iiii	chr11:129992099-129992371(+)$1	272	7	11	11.9999
!!dd	chr21:34921820-34922082(+)$1	262	207	211	11.9999
====	chr2:102448112-102448407(+)$1	295	103	107	11.9999
~~BB	chr2:55461228-55461440(+)$1	212	114	118	11.9999
bnnn	chr4:100522708-100522954(+)$1	246	40	44	11.9999
dddd	chrX:76936911-76937186(-)$1	275	121	125	11.9999
cccm	chr17:33932667-33932955(+)$1	288	80	84	11.9999
aooo	chr11:61732425-61732677(-)$1	252	101	105	11.9999
DDDD	chr1:24022184-24022420(+)$1	236	24	28	11.9999
HHHH	chr5:75996813-75997093(+)$1	280	69	73	11.9999
LCCC	chr2:21258357-21258570(-)$1	213	28	32	11.9999
gggg	chr14:39648330-39648541(+)$1	211	48	52	11.9999
eeee	chr11:129992294-129992508(+)$1	214	183	187	11.9999
((((	chr8:27462727-27462953(-)$1	226	77	81	11.9999
}A}C	chr7:2394535-2394884(+)$1	349	319	323	11.9999
hhhq	chr15:79184453-79184761(+)$1	308	86	90	11.9999
eee#	chr21:40190362-40190627(+)$1	265	154	158	11.9999
FFFF	chr10:101590372-101590612(+)$1	240	31	35	11.9999
eeee	chr2:11364422-11364671(-)$1	249	49	53	11.9999
cc55	chr6:7580930-7581210(+)$1	280	141	145	11.9999
%%ee	chr17:72205841-72206085(+)$1	244	147	151	11.9999
mmme	chr1:43220641-43220940(-)$1	299	267	271	11.9999
FFF:	chr6:44220722-44220950(+)$1	228	3	7	11.9999
22cc	chr6:168275914-168276228(+)$1	314	282	286	11.9999
ffff	chr9:116823655-116823896(-)$1	241	104	108	11.9999
dd]b	chr1:70716270-70716569(+)$1	299	129	133	11.9999
MEEE	chr6:35837957-35838233(-)$1	276	119	123	11.9999
:eee	chr4:74313134-74313348(+)$1	214	35	39	11.9999
ddd[	chr11:57569450-57569764(+)$1	314	81	85	11.9999
hhhh	chr9:711736-711968(+)$1	232	184	188	11.9999
dd::	chr2:21235021-21235280(-)$1	259	47	51	11.9999
nnnn	chr3:52834455-52834720(+)$1	265	13	17	11.9999
eee2	chr2:63170848-63171078(+)$1	230	38	42	11.9999
ffff	chr4:174253015-174253343(-)$1	328	220	224	11.9999
FFFF	chr12:46760760-46761021(-)$1	261	53	57	11.9999
gg++	chr18:47016786-47017022(-)$1	236	45	49	11.9999
#bb[	chrX:70517191-70517412(+)$1	221	20	24	11.9999
::::	chr1:245023559-245023803(-)$1	244	217	221	11.9999
ppee	chr2:32702362-32702629(+)$1	267	229	233	11.9999
bbnn	chr2:232325171-232325375(-)$1	204	103	107	11.9999
[bbm	chr2:85778930-85779204(-)$1	274	7	11	11.9999
[bb#	chr1:52293367-52293642(-)$1	275	163	167	11.9999
::::	chr2:21263713-21263932(-)$1	219	208	212	11.9999
A{GG	chr1:45243208-45243465(+)$1	257	67	71	11.9999
YYCC	chr20:39725761-39725998(+)$1	237	223	227	11.9999
fppp	chr12:26864040-26864300(-)$1	260	32	36	11.9999
SFFF	chr2:39234070-39234331(-)$1	261	35	39	11.9999
ddpp	chrX:20190763-20191050(-)$1	287	134	138	11.9999
f333	chr19:51856278-51856541(-)$1	263	160	164	11.9999

#DB
((((	chr11:57563945-57564234(+)$1	1	2	6	11.9999
))).	chr7:134625853-134626091(+)$1	1	163	167	11.9999
(...	chr17:7794164-7794456(+)$1	1	30	34	11.9999
....	chr17:62499222-62499477(-)$1	1	21	25	11.9999
((((	chr2:54870019-54870226(+)$1	1	94	98	11.9999
.(((	chr7:107569468-107569748(-)$1	1	75	79	11.9999
....	chr12:104333209-104333432(+)$1	1	87	91	11.9999
....	chr20:61537137-61537439(-)$1	1	6	10	11.9999
((((	chr6:7579656-7579937(+)$1	1	146	150	11.9999
...(	chr5:170827786-170828029(+)$1	1	8	12	11.9999
((((	chr2:216256311-216256544(-)$1	1	7	11	11.9999
((((	chr19:5594006-5594290(-)$1	1	89	93	11.9999
))))	chr20:36365705-36365987(+)$1	1	35	39	11.9999
)).)	chr6:56392299-56392573(-)$1	1	184	188	11.9999
.(((	chr1:236966661-236966998(+)$1	1	315	319	11.9999
.)))	chr11:68331763-68332014(+)$1	1	230	234	11.9999
.(((	chr2:21258355-21258557(-)$1	1	15	19	11.9999
(..(	chr10:79800297-79800545(+)$1	1	107	111	11.9999
((((	chr12:56495502-56495799(+)$1	1	41	45	11.9999
(...	chr2:54880644-54880922(+)$1	1	220	224	11.9999
.(((	chr2:198273042-198273348(-)$1	1	262	266	11.9999
))).	chr1:39815080-39815346(+)$1	1	92	96	11.9999
((((	chr11:129992099-129992371(+)$1	1	7	11	11.9999
..((	chr21:34921820-34922082(+)$1	1	207	211	11.9999
))))	chr2:102448112-102448407(+)$1	1	103	107	11.9999
..))	chr2:55461228-55461440(+)$1	1	114	118	11.9999
(...	chr4:100522708-100522954(+)$1	1	40	44	11.9999
))))	chrX:76936911-76937186(-)$1	1	121	125	11.9999
(((.	chr17:33932667-33932955(+)$1	1	80	84	11.9999
(...	chr11:61732425-61732677(-)$1	1	101	105	11.9999
((((	chr1:24022184-24022420(+)$1	1	24	28	11.9999
((((	chr5:75996813-75997093(+)$1	1	69	73	11.9999
.(((	chr2:21258357-21258570(-)$1	1	28	32	11.9999
((((	chr14:39648330-39648541(+)$1	1	48	52	11.9999
))))	chr11:129992294-129992508(+)$1	1	183	187	11.9999
....	chr8:27462727-27462953(-)$1	1	77	81	11.9999
.).)	chr7:2394535-2394884(+)$1	1	319	323	11.9999
(((.	chr15:79184453-79184761(+)$1	1	86	90	11.9999
(((.	chr21:40190362-40190627(+)$1	1	154	158	11.9999
((((	chr10:101590372-101590612(+)$1	1	31	35	11.9999
((((	chr2:11364422-11364671(-)$1	1	49	53	11.9999
))..	chr6:7580930-7581210(+)$1	1	141	145	11.9999
..((	chr17:72205841-72206085(+)$1	1	147	151	11.9999
...)	chr1:43220641-43220940(-)$1	1	267	271	11.9999
(((.	chr6:44220722-44220950(+)$1	1	3	7	11.9999
..))	chr6:168275914-168276228(+)$1	1	282	286	11.9999
((((	chr9:116823655-116823896(-)$1	1	104	108	11.9999
)).)	chr1:70716270-70716569(+)$1	1	129	133	11.9999
.(((	chr6:35837957-35838233(-)$1	1	119	123	11.9999
.(((	chr4:74313134-74313348(+)$1	1	35	39	11.9999
(((.	chr11:57569450-57569764(+)$1	1	81	85	11.9999
))))	chr9:711736-711968(+)$1	1	184	188	11.9999
))..	chr2:21235021-21235280(-)$1	1	47	51	11.9999
....	chr3:52834455-52834720(+)$1	1	13	17	11.9999
))).	chr2:63170848-63171078(+)$1	1	38	42	11.9999
))))	chr4:174253015-174253343(-)$1	1	220	224	11.9999
((((	chr12:46760760-46761021(-)$1	1	53	57	11.9999
((..	chr18:47016786-47017022(-)$1	1	45	49	11.9999
.((.	chrX:70517191-70517412(+)$1	1	20	24	11.9999
....	chr1:245023559-245023803(-)$1	1	217	221	11.9999
..))	chr2:32702362-32702629(+)$1	1	229	233	11.9999
((..	chr2:232325171-232325375(-)$1	1	103	107	11.9999
.((.	chr2:85778930-85779204(-)$1	1	7	11	11.9999
.((.	chr1:52293367-52293642(-)$1	1	163	167	11.9999
....	chr2:21263713-21263932(-)$1	1	208	212	11.9999
(.((	chr1:45243208-45243465(+)$1	1	67	71	11.9999
..))	chr20:39725761-39725998(+)$1	1	223	227	11.9999
(...	chr12:26864040-26864300(-)$1	1	32	36	11.9999
.(((	chr2:39234070-39234331(-)$1	1	35	39	11.9999
((..	chrX:20190763-20191050(-)$1	1	134	138	11.9999
)...	chr19:51856278-51856541(-)$1	1	160	164	11.9999

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
U : 0.98	u : 0.01	

#score	851.9999999999998
#seq	71
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_CDS_m2_run2.nuc.txt

#NT
GAGA	chr19:15383749-15384045(-)$1	296	15	19	11.9999
GAGA	chr12:122189884-122190147(+)$1	263	171	175	11.9999
GAGA	chr3:121412757-121413036(-)$1	279	75	79	11.9999
GAGA	chr6:7581496-7581744(+)$1	248	36	40	11.9999
GAGA	chr11:2154313-2154524(-)$1	211	32	36	11.9999
gaga	chr9:100777599-100777854(+)$1	255	80	84	11.9999
GAGA	chr13:113765043-113765291(+)$1	248	49	53	11.9999
GAGA	chr14:56083178-56083431(+)$1	253	127	131	11.9999
gaga	chr4:73968002-73968292(-)$1	290	68	72	11.9999
GAGA	chr20:48500501-48500790(+)$1	289	93	97	11.9999
GAGA	chr11:2156543-2156746(-)$1	203	80	84	11.9999
GAGA	chr12:76449749-76449960(-)$1	211	52	56	11.9999
GAGA	chr3:148905762-148905998(-)$1	236	54	58	11.9999
GAGA	chr11:2154648-2154850(-)$1	202	38	42	11.9999
GAGA	chr11:2154293-2154497(-)$1	204	5	9	11.9999
GAGA	chr19:10488971-10489228(-)$1	257	91	95	11.9999
GAGA	chr13:20207953-20208202(+)$1	249	60	64	11.9999
GAGA	chr4:69203203-69203469(-)$1	266	88	92	11.9999
GAGA	chr2:178080782-178081030(+)$1	248	6	10	11.9999
GAGA	chr17:65850554-65850821(+)$1	267	20	24	11.9999
GAGA	chr7:107564278-107564627(-)$1	349	41	45	11.9999
GAGA	chr11:2156504-2156711(-)$1	207	45	49	11.9999
GAGA	chr9:19376277-19376481(-)$1	204	104	108	11.9999
GAGA	chr17:78302062-78302369(+)$1	307	123	127	11.9999
GAGA	chr5:138657522-138657821(+)$1	299	73	77	11.9999
GAGA	chr19:57325131-57325400(-)$1	269	20	24	11.9999
GAGA	chr11:2156511-2156718(-)$1	207	52	56	11.9999
GAGA	chr11:2156567-2156787(-)$1	220	121	125	11.9999
GAGA	chr17:65163473-65163729(-)$1	256	40	44	11.9999
GAGA	chr12:54676516-54676759(+)$1	243	164	168	11.9999
gaga	chr1:90493027-90493348(+)$1	321	55	59	11.9999
GAGA	chr14:54416725-54417045(-)$1	320	263	267	11.9999
gaga	chr21:47612752-47612981(-)$1	229	17	21	11.9999
GAGA	chr17:1268051-1268297(-)$1	246	60	64	11.9999
GAGA	chr1:46073906-46074176(+)$1	270	21	25	11.9999
GAGA	chr20:13756528-13756869(-)$1	341	314	318	11.9999
GAGA	chr12:121431407-121431686(+)$1	279	43	47	11.9999
GAGA	chr9:131345409-131345661(+)$1	252	33	37	11.9999
gaga	chr21:47612948-47613159(-)$1	211	195	199	11.9999
GAGA	chr17:38317950-38318264(+)$1	314	145	149	11.9999
GAGA	chr12:6879238-6879464(+)$1	226	127	131	11.9999
GAGA	chr9:19376390-19376595(-)$1	205	94	98	11.9999
GAGA	chr6:7579485-7579733(+)$1	248	71	75	11.9999
GAGA	chr2:198266369-198266609(-)$1	240	73	77	11.9999
GAGA	chr1:32797662-32797947(+)$1	285	88	92	11.9999
GAGA	chr1:70716270-70716536(+)$1	266	65	69	11.9999
GAGA	chr11:2154650-2154853(-)$1	203	41	45	11.9999
GAGA	chr11:2154289-2154493(-)$1	204	1	5	11.9999
GAGA	chr18:8088647-8088960(+)$1	313	47	51	11.9999
GAGA	chr3:121410182-121410474(-)$1	292	64	68	11.9999
GAGA	chr6:144783803-144784047(+)$1	244	4	8	11.9999
GAGA	chr14:102550933-102551186(-)$1	253	116	120	11.9999
GAGA	chr9:19376281-19376487(-)$1	206	110	114	11.9999
GAGA	chr11:2156587-2156796(-)$1	209	130	134	11.9999
GAGA	chr11:2156532-2156740(-)$1	208	74	78	11.9999
GAGA	chr22:24313601-24313851(-)$1	250	160	164	11.9999
GAGA	chr12:76453476-76453693(-)$1	217	107	111	11.9999
GAGA	chr19:4048109-4048446(-)$1	337	244	248	11.9999
GAGA	chr3:37368401-37368688(+)$1	287	26	30	11.9999
gaga	chr11:35684889-35685222(+)$1	333	31	35	11.9999
GAGA	chr11:2154120-2154326(-)$1	206	86	90	11.9999
GAGA	chr7:11101549-11101829(+)$1	280	54	58	11.9999
gaga	chr6:44218149-44218369(+)$1	220	49	53	11.9999
gaga	chr2:27606728-27606959(-)$1	231	42	46	11.9999
GAGA	chr11:2154703-2154913(-)$1	210	101	105	11.9999
GAGA	chr1:171510097-171510374(+)$1	277	37	41	11.9999
GAGA	chr14:56083133-56083378(+)$1	245	172	176	11.9999
GAGA	chr3:42680767-42681016(+)$1	249	42	46	11.9999
GAGA	chr12:76443434-76443638(-)$1	204	149	153	11.9999
gaga	chr21:47612379-47612592(-)$1	213	94	98	11.9999
GAGA	chr12:76444210-76444445(-)$1	235	106	110	11.9999
GAGA	chr10:120797651-120797907(-)$1	256	7	11	11.9999
GAGA	chr15:66791721-66791967(-)$1	246	37	41	11.9999
GAGA	chr15:25616579-25616912(-)$1	333	4	8	11.9999
GAGA	chr19:41938169-41938422(-)$1	253	182	186	11.9999
GAGA	chr5:145523968-145524216(-)$1	248	130	134	11.9999
gaga	chr2:99992779-99993162(+)$1	383	141	145	11.9999
GAGA	chr6:44218728-44218953(+)$1	225	131	135	11.9999
gaga	chr12:6879060-6879265(+)$1	205	32	36	11.9999
GAGA	chr11:2154792-2154995(-)$1	203	183	187	11.9999
GAGA	chr9:131356528-131356752(+)$1	224	34	38	11.9999
GAGA	chr11:2154691-2154896(-)$1	205	84	88	11.9999
gaga	chr6:44218169-44218379(+)$1	210	29	33	11.9999
gaga	chr8:117862756-117863030(-)$1	274	129	133	11.9999
GAGA	chr15:66791699-66791921(-)$1	222	135	139	11.9999
gaga	chr4:69202672-69203012(-)$1	340	70	74	11.9999

#otherMatches

#Struct PSSM
DOOO	chr17:38317904-38318150(+)$1	246	10	14	11.9999
FFF:	chr19:15383749-15384045(-)$1	296	15	19	11.9999
tttt	chr12:122189884-122190147(+)$1	263	171	175	11.9999
::::	chr3:121412757-121413036(-)$1	279	75	79	11.9999
hhhh	chr6:7581496-7581744(+)$1	248	36	40	11.9999
c!!e	chr11:2154313-2154524(-)$1	211	32	36	11.9999
cc[b	chr9:100777599-100777854(+)$1	255	80	84	11.9999
mmmg	chr13:113765043-113765291(+)$1	248	49	53	11.9999
ccc:	chr14:56083178-56083431(+)$1	253	127	131	11.9999
ee22	chr4:73968002-73968292(-)$1	290	68	72	11.9999
eee:	chr20:48500501-48500790(+)$1	289	93	97	11.9999
ammm	chr11:2156543-2156746(-)$1	203	80	84	11.9999
^^^^	chr12:76449749-76449960(-)$1	211	52	56	11.9999
mmmm	chr3:148905762-148905998(-)$1	236	54	58	11.9999
HHHR	chr11:2154648-2154850(-)$1	202	38	42	11.9999
c!!e	chr11:2154293-2154497(-)$1	204	5	9	11.9999
ffff	chr19:10488971-10489228(-)$1	257	91	95	11.9999
8888	chr13:20207953-20208202(+)$1	249	60	64	11.9999
LFFF	chr4:69203203-69203469(-)$1	266	88	92	11.9999
[ddd	chr2:178080782-178081030(+)$1	248	6	10	11.9999
%%%%	chr17:65850554-65850821(+)$1	267	20	24	11.9999
gggc	chr7:107564278-107564627(-)$1	349	41	45	11.9999
ammm	chr11:2156504-2156711(-)$1	207	45	49	11.9999
pppp	chr9:19376277-19376481(-)$1	204	104	108	11.9999
::::	chr17:78302062-78302369(+)$1	307	123	127	11.9999
eee3	chr5:138657522-138657821(+)$1	299	73	77	11.9999
b::f	chr19:57325131-57325400(-)$1	269	20	24	11.9999
ammm	chr11:2156511-2156718(-)$1	207	52	56	11.9999
eee5	chr11:2156567-2156787(-)$1	220	121	125	11.9999
CCCK	chr17:65163473-65163729(-)$1	256	40	44	11.9999
uuuu	chr12:54676516-54676759(+)$1	243	164	168	11.9999
::::	chr1:90493027-90493348(+)$1	321	55	59	11.9999
DYYJ	chr14:54416725-54417045(-)$1	320	263	267	11.9999
$$$$	chr21:47612752-47612981(-)$1	229	17	21	11.9999
d444	chr17:1268051-1268297(-)$1	246	60	64	11.9999
eee"	chr1:46073906-46074176(+)$1	270	21	25	11.9999
333=	chr20:13756528-13756869(-)$1	341	314	318	11.9999
b!!c	chr12:121431407-121431686(+)$1	279	43	47	11.9999
KBBK	chr9:131345409-131345661(+)$1	252	33	37	11.9999
H|||	chr21:47612948-47613159(-)$1	211	195	199	11.9999
eeCC	chr17:38317950-38318264(+)$1	314	145	149	11.9999
oooc	chr12:6879238-6879464(+)$1	226	127	131	11.9999
&&&&	chr9:19376390-19376595(-)$1	205	94	98	11.9999
eeep	chr6:7579485-7579733(+)$1	248	71	75	11.9999
c::c	chr2:198266369-198266609(-)$1	240	73	77	11.9999
HHH}	chr1:32797662-32797947(+)$1	285	88	92	11.9999
{A::	chr1:70716270-70716536(+)$1	266	65	69	11.9999
FFFK	chr11:2154650-2154853(-)$1	203	41	45	11.9999
b!!e	chr11:2154289-2154493(-)$1	204	1	5	11.9999
c[aq	chr18:8088647-8088960(+)$1	313	47	51	11.9999
{A{D	chr3:121410182-121410474(-)$1	292	64	68	11.9999
::::	chr6:144783803-144784047(+)$1	244	4	8	11.9999
c]bb	chr14:102550933-102551186(-)$1	253	116	120	11.9999
22ff	chr9:19376281-19376487(-)$1	206	110	114	11.9999
eee5	chr11:2156587-2156796(-)$1	209	130	134	11.9999
ammm	chr11:2156532-2156740(-)$1	208	74	78	11.9999
ggg!	chr22:24313601-24313851(-)$1	250	160	164	11.9999
b]a]	chr12:76453476-76453693(-)$1	217	107	111	11.9999
e[a!	chr19:4048109-4048446(-)$1	337	244	248	11.9999
ODDD	chr3:37368401-37368688(+)$1	287	26	30	11.9999
CC{A	chr11:35684889-35685222(+)$1	333	31	35	11.9999
tttt	chr11:2154120-2154326(-)$1	206	86	90	11.9999
dd++	chr7:11101549-11101829(+)$1	280	54	58	11.9999
appp	chr6:44218149-44218369(+)$1	220	49	53	11.9999
::::	chr2:27606728-27606959(-)$1	231	42	46	11.9999
FFFK	chr11:2154703-2154913(-)$1	210	101	105	11.9999
::::	chr1:171510097-171510374(+)$1	277	37	41	11.9999
^^^^	chr14:56083133-56083378(+)$1	245	172	176	11.9999
::::	chr3:42680767-42681016(+)$1	249	42	46	11.9999
CCC}	chr12:76443434-76443638(-)$1	204	149	153	11.9999
$$$$	chr21:47612379-47612592(-)$1	213	94	98	11.9999
cnnn	chr12:76444210-76444445(-)$1	235	106	110	11.9999
bbll	chr10:120797651-120797907(-)$1	256	7	11	11.9999
LLLD	chr15:66791721-66791967(-)$1	246	37	41	11.9999
FFFF	chr15:25616579-25616912(-)$1	333	4	8	11.9999
oooo	chr19:41938169-41938422(-)$1	253	182	186	11.9999
dddd	chr5:145523968-145524216(-)$1	248	130	134	11.9999
HHHH	chr2:99992779-99993162(+)$1	383	141	145	11.9999
YDDD	chr6:44218728-44218953(+)$1	225	131	135	11.9999
zzzz	chr12:6879060-6879265(+)$1	205	32	36	11.9999
b:::	chr11:2154792-2154995(-)$1	203	183	187	11.9999
ddd"	chr9:131356528-131356752(+)$1	224	34	38	11.9999
FFFK	chr11:2154691-2154896(-)$1	205	84	88	11.9999
appp	chr6:44218169-44218379(+)$1	210	29	33	11.9999
teee	chr8:117862756-117863030(-)$1	274	129	133	11.9999
mbb:	chr15:66791699-66791921(-)$1	222	135	139	11.9999
::::	chr4:69202672-69203012(-)$1	340	70	74	11.9999

#DB
(...	chr17:38317904-38318150(+)$1	1	10	14	11.9999
(((.	chr19:15383749-15384045(-)$1	1	15	19	11.9999
....	chr12:122189884-122190147(+)$1	1	171	175	11.9999
....	chr3:121412757-121413036(-)$1	1	75	79	11.9999
((((	chr6:7581496-7581744(+)$1	1	36	40	11.9999
(..(	chr11:2154313-2154524(-)$1	1	32	36	11.9999
((.(	chr9:100777599-100777854(+)$1	1	80	84	11.9999
...)	chr13:113765043-113765291(+)$1	1	49	53	11.9999
))).	chr14:56083178-56083431(+)$1	1	127	131	11.9999
))..	chr4:73968002-73968292(-)$1	1	68	72	11.9999
))).	chr20:48500501-48500790(+)$1	1	93	97	11.9999
(...	chr11:2156543-2156746(-)$1	1	80	84	11.9999
....	chr12:76449749-76449960(-)$1	1	52	56	11.9999
....	chr3:148905762-148905998(-)$1	1	54	58	11.9999
(((.	chr11:2154648-2154850(-)$1	1	38	42	11.9999
(..(	chr11:2154293-2154497(-)$1	1	5	9	11.9999
))))	chr19:10488971-10489228(-)$1	1	91	95	11.9999
....	chr13:20207953-20208202(+)$1	1	60	64	11.9999
.(((	chr4:69203203-69203469(-)$1	1	88	92	11.9999
.(((	chr2:178080782-178081030(+)$1	1	6	10	11.9999
....	chr17:65850554-65850821(+)$1	1	20	24	11.9999
((((	chr7:107564278-107564627(-)$1	1	41	45	11.9999
(...	chr11:2156504-2156711(-)$1	1	45	49	11.9999
....	chr9:19376277-19376481(-)$1	1	104	108	11.9999
....	chr17:78302062-78302369(+)$1	1	123	127	11.9999
))).	chr5:138657522-138657821(+)$1	1	73	77	11.9999
)..(	chr19:57325131-57325400(-)$1	1	20	24	11.9999
(...	chr11:2156511-2156718(-)$1	1	52	56	11.9999
))).	chr11:2156567-2156787(-)$1	1	121	125	11.9999
(((.	chr17:65163473-65163729(-)$1	1	40	44	11.9999
....	chr12:54676516-54676759(+)$1	1	164	168	11.9999
....	chr1:90493027-90493348(+)$1	1	55	59	11.9999
)..)	chr14:54416725-54417045(-)$1	1	263	267	11.9999
....	chr21:47612752-47612981(-)$1	1	17	21	11.9999
)...	chr17:1268051-1268297(-)$1	1	60	64	11.9999
(((.	chr1:46073906-46074176(+)$1	1	21	25	11.9999
...)	chr20:13756528-13756869(-)$1	1	314	318	11.9999
(..(	chr12:121431407-121431686(+)$1	1	43	47	11.9999
.((.	chr9:131345409-131345661(+)$1	1	33	37	11.9999
)...	chr21:47612948-47613159(-)$1	1	195	199	11.9999
))))	chr17:38317950-38318264(+)$1	1	145	149	11.9999
...)	chr12:6879238-6879464(+)$1	1	127	131	11.9999
....	chr9:19376390-19376595(-)$1	1	94	98	11.9999
(((.	chr6:7579485-7579733(+)$1	1	71	75	11.9999
)..(	chr2:198266369-198266609(-)$1	1	73	77	11.9999
))).	chr1:32797662-32797947(+)$1	1	88	92	11.9999
.(..	chr1:70716270-70716536(+)$1	1	65	69	11.9999
(((.	chr11:2154650-2154853(-)$1	1	41	45	11.9999
(..(	chr11:2154289-2154493(-)$1	1	1	5	11.9999
(.(.	chr18:8088647-8088960(+)$1	1	47	51	11.9999
.(.(	chr3:121410182-121410474(-)$1	1	64	68	11.9999
....	chr6:144783803-144784047(+)$1	1	4	8	11.9999
).))	chr14:102550933-102551186(-)$1	1	116	120	11.9999
..))	chr9:19376281-19376487(-)$1	1	110	114	11.9999
))).	chr11:2156587-2156796(-)$1	1	130	134	11.9999
(...	chr11:2156532-2156740(-)$1	1	74	78	11.9999
(((.	chr22:24313601-24313851(-)$1	1	160	164	11.9999
).).	chr12:76453476-76453693(-)$1	1	107	111	11.9999
(.(.	chr19:4048109-4048446(-)$1	1	244	248	11.9999
.(((	chr3:37368401-37368688(+)$1	1	26	30	11.9999
((.(	chr11:35684889-35685222(+)$1	1	31	35	11.9999
....	chr11:2154120-2154326(-)$1	1	86	90	11.9999
((..	chr7:11101549-11101829(+)$1	1	54	58	11.9999
(...	chr6:44218149-44218369(+)$1	1	49	53	11.9999
....	chr2:27606728-27606959(-)$1	1	42	46	11.9999
(((.	chr11:2154703-2154913(-)$1	1	101	105	11.9999
....	chr1:171510097-171510374(+)$1	1	37	41	11.9999
....	chr14:56083133-56083378(+)$1	1	172	176	11.9999
....	chr3:42680767-42681016(+)$1	1	42	46	11.9999
))).	chr12:76443434-76443638(-)$1	1	149	153	11.9999
....	chr21:47612379-47612592(-)$1	1	94	98	11.9999
(...	chr12:76444210-76444445(-)$1	1	106	110	11.9999
((..	chr10:120797651-120797907(-)$1	1	7	11	11.9999
...(	chr15:66791721-66791967(-)$1	1	37	41	11.9999
((((	chr15:25616579-25616912(-)$1	1	4	8	11.9999
....	chr19:41938169-41938422(-)$1	1	182	186	11.9999
((((	chr5:145523968-145524216(-)$1	1	130	134	11.9999
((((	chr2:99992779-99993162(+)$1	1	141	145	11.9999
.)))	chr6:44218728-44218953(+)$1	1	131	135	11.9999
....	chr12:6879060-6879265(+)$1	1	32	36	11.9999
)...	chr11:2154792-2154995(-)$1	1	183	187	11.9999
(((.	chr9:131356528-131356752(+)$1	1	34	38	11.9999
(((.	chr11:2154691-2154896(-)$1	1	84	88	11.9999
(...	chr6:44218169-44218379(+)$1	1	29	33	11.9999
.)))	chr8:117862756-117863030(-)$1	1	129	133	11.9999
.)).	chr15:66791699-66791921(-)$1	1	135	139	11.9999
....	chr4:69202672-69203012(-)$1	1	70	74	11.9999

#PSSM
G : 0.82	g : 0.17	
A : 0.82	a : 0.17	
G : 0.82	g : 0.17	
A : 0.83	a : 0.16	

#score	1043.9999999999998
#seq	87
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_CDS_m2_run1.nuc.txt

#NT
GGCCUCCCCGA	chr2:220435293-220435530(-)$1	237	32	43	16.6666
GGCCCGCCUGG	chr9:117062826-117063065(+)$1	239	78	89	19.3333
GGCCUGCCGGG	chr21:46908232-46908457(+)$1	225	108	119	19.3333
UGCCUUCCUGG	chr9:117063250-117063506(+)$1	256	195	206	18.3333
GGCCUGCCGGG	chr9:117002615-117002857(+)$1	242	116	127	19.3333
GGCUUCCCUGC	chr2:242757627-242757937(+)$1	310	89	100	15.6666
GGCCUUCCCGG	chr10:1094606-1094927(-)$1	321	293	304	20.6666
GGCCUCCCUGG	chr21:46910142-46910358(+)$1	216	82	93	22.3333
GGCAUCGCUGG	chr9:117052426-117052697(+)$1	271	131	142	15.6666
GGCCCUUCUGG	chr21:46907304-46907523(+)$1	219	78	89	16.3333
CGCCCUCCUGG	chr9:117026537-117026778(+)$1	241	27	38	16.0000
GGCCUUCACGG	chrX:41193667-41193974(+)$1	307	275	286	16.3333
GGCUUACCUGG	chr9:117053000-117053254(+)$1	254	161	172	18.6666
GGCCCCGCCGG	chr14:34931151-34931420(-)$1	269	219	230	15.0000

#otherMatches

#Struct PSSM
nna]hhhhhhh	chr9:117053054-117053295(+)$1	241	107	118	18.6666
ffff!!dddd!	chr2:220435293-220435530(-)$1	237	32	43	16.6666
gggggdddddd	chr9:117062826-117063065(+)$1	239	78	89	19.3333
ffmmmmfffff	chr21:46908232-46908457(+)$1	225	108	119	19.3333
:cccnnnnncc	chr9:117063250-117063506(+)$1	256	195	206	18.3333
GGGGGgggggg	chr9:117002615-117002857(+)$1	242	116	127	19.3333
bccc$$$$$ee	chr2:242757627-242757937(+)$1	310	89	100	15.6666
=ccc:GGGGGG	chr10:1094606-1094927(-)$1	321	293	304	20.6666
b[ggggggg))	chr21:46910142-46910358(+)$1	216	82	93	22.3333
ddd:::EEEEE	chr9:117052426-117052697(+)$1	271	131	142	15.6666
ggggdddd[cc	chr21:46907304-46907523(+)$1	219	78	89	16.3333
2ccc]ddddbb	chr9:117026537-117026778(+)$1	241	27	38	16.0000
mffffff22dd	chrX:41193667-41193974(+)$1	307	275	286	16.3333
nna]hhhhhhh	chr9:117053000-117053254(+)$1	254	161	172	18.6666
JJJJJJJJCCC	chr14:34931151-34931420(-)$1	269	219	230	15.0000

#DB
..).)))))))	chr9:117053054-117053295(+)$1	1	107	118	18.6666
((((..((((.	chr2:220435293-220435530(-)$1	1	32	43	16.6666
(((((((((((	chr9:117062826-117063065(+)$1	1	78	89	19.3333
((....)))))	chr21:46908232-46908457(+)$1	1	108	119	19.3333
.(((.....))	chr9:117063250-117063506(+)$1	1	195	206	18.3333
(((((((((((	chr9:117002615-117002857(+)$1	1	116	127	19.3333
)(((.....((	chr2:242757627-242757937(+)$1	1	89	100	15.6666
)))).))))))	chr10:1094606-1094927(-)$1	1	293	304	20.6666
(.(((((((..	chr21:46910142-46910358(+)$1	1	82	93	22.3333
)))...)))))	chr9:117052426-117052697(+)$1	1	131	142	15.6666
))))((((.((	chr21:46907304-46907523(+)$1	1	78	89	16.3333
.))).))))((	chr9:117026537-117026778(+)$1	1	27	38	16.0000
.))))))..))	chrX:41193667-41193974(+)$1	1	275	286	16.3333
..).)))))))	chr9:117053000-117053254(+)$1	1	161	172	18.6666
)))))))))))	chr14:34931151-34931420(-)$1	1	219	230	15.0000

#PSSM
G : 0.86	U : 0.06	C : 0.06	
G : 0.99	
C : 0.99	
C : 0.73	U : 0.20	A : 0.06	
U : 0.73	C : 0.26	
C : 0.33	U : 0.33	G : 0.20	A : 0.13	
C : 0.79	G : 0.13	U : 0.06	
C : 0.93	A : 0.06	
U : 0.60	C : 0.26	G : 0.13	
G : 0.99	
G : 0.86	A : 0.06	C : 0.06	

#score	268.33333333333326
#seq	15
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_transcript_m2_run2.nuc.txt

#NT
CUGGGCCCA	chr22:49943447-49943814(-)$1	367	5	14	12.5172
CAGGGCUCU	chr20:62551434-62551683(+)$1	249	123	132	12.6034
CUGGGCCCU	chr16:89030581-89030839(-)$1	258	45	54	12.9482
cugggcuca	chr11:458575-458830(+)$1	255	148	157	16.2241
uuggccucc	chr7:1151133-1151375(-)$1	242	172	181	11.1379
CUGGGCUCU	chr9:139559566-139559894(+)$1	328	126	135	16.6551
UUUGGCUCC	chr21:9927186-9927448(-)$1	262	114	123	10.7931
AUGGGCUGU	chr7:1160362-1160626(-)$1	264	14	23	11.3103
CUGGGCUCA	chr8:94753045-94753286(-)$1	241	84	93	16.2241
AGGGGCUCU	chr16:89038655-89038905(-)$1	250	205	214	11.3103
UUGGGCCCC	chr1:2161478-2161728(+)$1	250	170	179	11.7413
CUGGGCUAC	chr17:46697201-46697466(-)$1	265	139	148	12.4310
cggggcucu	chr20:25846382-25846627(-)$1	245	235	244	12.8620
CUGGGCUUG	chr1:2210707-2211038(+)$1	331	222	231	11.6551
CUGGGCUCC	chr16:89040771-89041047(-)$1	276	253	262	16.5689
CUGGGCUCA	chr7:1140755-1141008(-)$1	253	47	56	16.2241
GUGGGCUUU	chr16:89347434-89347678(-)$1	244	34	43	12.0862
GUGGGCUCA	chr7:1892279-1892527(-)$1	248	111	120	15.6206
CUGAGCUCC	chr1:1027638-1027908(-)$1	270	146	155	11.9137
GUGGGCUCC	chr20:29520920-29521160(-)$1	240	101	110	15.9655
UUGUGCUCC	chr17:78894471-78894709(+)$1	238	33	42	10.7931
uugcgcucc	chr8:663246-663530(-)$1	284	227	236	10.7931
GUGGCCUCC	chr18:75695375-75695615(-)$1	240	40	49	11.6551
CUGGGCUCA	chr16:89463819-89464080(-)$1	261	118	127	16.2241
CUGGGCGCA	chr9:133760237-133760484(+)$1	247	221	230	12.4310
cggggcucg	chr9:139560096-139560352(+)$1	256	101	110	11.8275
AUGGGCUUC	chr22:20049442-20049720(+)$1	278	176	185	11.0517
uuggggucu	chr22:49937069-49937353(-)$1	284	81	90	11.9137
GUGGGCUGG	chr22:21801092-21801341(+)$1	249	206	215	11.2241
GUGGGCUGG	chr22:20050697-20050991(+)$1	294	89	98	11.2241
GUGGGCGCU	chr12:133129420-133129668(+)$1	248	38	47	12.2586
GUGGGGUCU	chr19:11169365-11169636(+)$1	271	15	24	12.4310
CCGGGCUCU	chr16:87736083-87736342(-)$1	259	103	112	12.6034
UGGGGCUCC	chr16:89469276-89469525(-)$1	249	220	229	11.6551
AUGGGUUCA	chr8:94747774-94748010(-)$1	236	23	32	10.5344
GUGGGAUCA	chr2:236544899-236545140(+)$1	241	126	135	11.4827
GUGGGCUGC	chr18:75689420-75689658(-)$1	238	188	197	12.1724
CUGGGCGCC	chr13:92000687-92000954(+)$1	267	139	148	12.7758
CUGGGGUCU	chr16:89465246-89465497(-)$1	251	137	146	13.0344
auggucucu	chr20:29519393-29519612(-)$1	219	202	211	10.7068
GUGGGCUCG	chr1:2162574-2162819(+)$1	245	100	109	15.0172
UUGGGGUCA	chr9:134350659-134350947(+)$1	288	29	38	11.4827
cugggcugc	chr7:57710565-57710820(-)$1	255	135	144	12.7758
GUGGGCCCA	chr1:2201595-2201896(+)$1	301	62	71	11.9137
CUUGGCUCU	chr9:138752650-138752986(-)$1	336	58	67	12.0000
AGGGGCUCU	chr13:114186641-114186937(+)$1	296	74	83	11.3103
GAGGGCUCC	chr12:133135024-133135296(+)$1	272	258	267	11.9137
CUGGCCUCG	chr8:144999533-144999816(-)$1	283	268	277	11.3103
UCGGGCUCC	chr2:112022619-112022929(-)$1	310	43	52	11.3965
GUGGGGUCU	chr12:133127768-133128023(+)$1	255	195	204	12.4310
GUGGGCCCC	chr16:89034354-89034641(-)$1	287	97	106	12.2586
cugggcacg	chr16:1366787-1367029(+)$1	242	58	67	11.5689
cuggucucu	chr22:49903012-49903269(-)$1	257	236	245	12.2586
GUGGGCUCA	chr1:2215906-2216147(+)$1	241	92	101	15.6206
UUGGGGUCU	chr1:2215010-2215267(+)$1	257	16	25	11.9137
UUGGGCGCA	chr19:2269974-2270211(+)$1	237	58	67	11.3103
cugggcuca	chr1:1028280-1028521(-)$1	241	165	174	16.2241

#otherMatches

#Struct PSSM
::::a[ddd	chr13:92000603-92000887(+)$1	284	0	9	12.4310
""eeeeeoo	chr22:49943447-49943814(-)$1	367	5	14	12.5172
gggg[bbll	chr20:62551434-62551683(+)$1	249	123	132	12.6034
mmmddddbb	chr16:89030581-89030839(-)$1	258	45	54	12.9482
"ffffff""	chr11:458575-458830(+)$1	255	148	157	16.2241
:cccmmmmc	chr7:1151133-1151375(-)$1	242	172	181	11.1379
mmmmbb]ee	chr9:139559566-139559894(+)$1	328	126	135	16.6551
nnneeeeea	chr21:9927186-9927448(-)$1	262	114	123	10.7931
::dddd$$$	chr7:1160362-1160626(-)$1	264	14	23	11.3103
qccchhhhh	chr8:94753045-94753286(-)$1	241	84	93	16.2241
:DDDDZZZE	chr16:89038655-89038905(-)$1	250	205	214	11.3103
gg:JJJJJJ	chr1:2161478-2161728(+)$1	250	170	179	11.7413
eeeeellle	chr17:46697201-46697466(-)$1	265	139	148	12.4310
C}GGGGGGG	chr20:25846382-25846627(-)$1	245	235	244	12.8620
nnggggggg	chr1:2210707-2211038(+)$1	331	222	231	11.6551
eeee]dddd	chr16:89040771-89041047(-)$1	276	253	262	16.5689
FFFFFKKBB	chr7:1140755-1141008(-)$1	253	47	56	16.2241
nneeeee22	chr16:89347434-89347678(-)$1	244	34	43	12.0862
f:::::::F	chr7:1892279-1892527(-)$1	248	111	120	15.6206
B{A{DDDDB	chr1:1027638-1027908(-)$1	270	146	155	11.9137
!bb[cccee	chr20:29520920-29521160(-)$1	240	101	110	15.9655
oooodddd3	chr17:78894471-78894709(+)$1	238	33	42	10.7931
##cccnnnn	chr8:663246-663530(-)$1	284	227	236	10.7931
ddddllldd	chr18:75695375-75695615(-)$1	240	40	49	11.6551
ggcccnnnn	chr16:89463819-89464080(-)$1	261	118	127	16.2241
DDDDDDDD\	chr9:133760237-133760484(+)$1	247	221	230	12.4310
cffffffll	chr9:139560096-139560352(+)$1	256	101	110	11.8275
2ccc=====	chr22:20049442-20049720(+)$1	278	176	185	11.0517
:eeeeeooo	chr22:49937069-49937353(-)$1	284	81	90	11.9137
eeeee]ddd	chr22:21801092-21801341(+)$1	249	206	215	11.2241
nnnnndddd	chr22:20050697-20050991(+)$1	294	89	98	11.2241
eeeee[amm	chr12:133129420-133129668(+)$1	248	38	47	12.2586
iiiii[ccc	chr19:11169365-11169636(+)$1	271	15	24	12.4310
d]cccdddd	chr16:87736083-87736342(-)$1	259	103	112	12.6034
lffffff::	chr16:89469276-89469525(-)$1	249	220	229	11.6551
=======ll	chr8:94747774-94748010(-)$1	236	23	32	10.5344
[dddd$$$$	chr2:236544899-236545140(+)$1	241	126	135	11.4827
##dddd!!f	chr18:75689420-75689658(-)$1	238	188	197	12.1724
cc22bb]ff	chr13:92000687-92000954(+)$1	267	139	148	12.7758
eeeeeeeee	chr16:89465246-89465497(-)$1	251	137	146	13.0344
]ffffff22	chr20:29519393-29519612(-)$1	219	202	211	10.7068
:::ffffff	chr1:2162574-2162819(+)$1	245	100	109	15.0172
fffmmmmff	chr9:134350659-134350947(+)$1	288	29	38	11.4827
5555fffff	chr7:57710565-57710820(-)$1	255	135	144	12.7758
HHHHHHCCC	chr1:2201595-2201896(+)$1	301	62	71	11.9137
GG{EEEEEI	chr9:138752650-138752986(-)$1	336	58	67	12.0000
:::GGGGGG	chr13:114186641-114186937(+)$1	296	74	83	11.3103
CZZZEEEEE	chr12:133135024-133135296(+)$1	272	258	267	11.9137
pppeeeee]	chr8:144999533-144999816(-)$1	283	268	277	11.3103
CC{DDDD:c	chr2:112022619-112022929(-)$1	310	43	52	11.3965
YYDDDD}BB	chr12:133127768-133128023(+)$1	255	195	204	12.4310
========:	chr16:89034354-89034641(-)$1	287	97	106	12.2586
gggg[ccce	chr16:1366787-1367029(+)$1	242	58	67	11.5689
CC}HHHHHH	chr22:49903012-49903269(-)$1	257	236	245	12.2586
iiiiiiii&	chr1:2215906-2216147(+)$1	241	92	101	15.6206
[eeeee[an	chr1:2215010-2215267(+)$1	257	16	25	11.9137
hhhhhhhh]	chr19:2269974-2270211(+)$1	237	58	67	11.3103
::eeeee[e	chr1:1028280-1028521(-)$1	241	165	174	16.2241

#DB
....(.(((	chr13:92000603-92000887(+)$1	1	0	9	12.4310
..(((((..	chr22:49943447-49943814(-)$1	1	5	14	12.5172
((((.((..	chr20:62551434-62551683(+)$1	1	123	132	12.6034
...))))))	chr16:89030581-89030839(-)$1	1	45	54	12.9482
.((((((..	chr11:458575-458830(+)$1	1	148	157	16.2241
.(((....)	chr7:1151133-1151375(-)$1	1	172	181	11.1379
....)).))	chr9:139559566-139559894(+)$1	1	126	135	16.6551
...))))))	chr21:9927186-9927448(-)$1	1	114	123	10.7931
..((((...	chr7:1160362-1160626(-)$1	1	14	23	11.3103
.))))))))	chr8:94753045-94753286(-)$1	1	84	93	16.2241
.))))...)	chr16:89038655-89038905(-)$1	1	205	214	11.3103
)).))))))	chr1:2161478-2161728(+)$1	1	170	179	11.7413
(((((...)	chr17:46697201-46697466(-)$1	1	139	148	12.4310
).)))))))	chr20:25846382-25846627(-)$1	1	235	244	12.8620
..)))))))	chr1:2210707-2211038(+)$1	1	222	231	11.6551
)))).))))	chr16:89040771-89041047(-)$1	1	253	262	16.5689
(((((..((	chr7:1140755-1141008(-)$1	1	47	56	16.2241
..)))))..	chr16:89347434-89347678(-)$1	1	34	43	12.0862
).......(	chr7:1892279-1892527(-)$1	1	111	120	15.6206
(.(.(((((	chr1:1027638-1027908(-)$1	1	146	155	11.9137
.((.(((((	chr20:29520920-29521160(-)$1	1	101	110	15.9655
....)))).	chr17:78894471-78894709(+)$1	1	33	42	10.7931
..(((....	chr8:663246-663530(-)$1	1	227	236	10.7931
((((...))	chr18:75695375-75695615(-)$1	1	40	49	11.6551
))(((....	chr16:89463819-89464080(-)$1	1	118	127	16.2241
)))))))).	chr9:133760237-133760484(+)$1	1	221	230	12.4310
)((((((..	chr9:139560096-139560352(+)$1	1	101	110	11.8275
.))))))))	chr22:20049442-20049720(+)$1	1	176	185	11.0517
.(((((...	chr22:49937069-49937353(-)$1	1	81	90	11.9137
))))).)))	chr22:21801092-21801341(+)$1	1	206	215	11.2241
.....))))	chr22:20050697-20050991(+)$1	1	89	98	11.2241
(((((.(..	chr12:133129420-133129668(+)$1	1	38	47	12.2586
(((((.(((	chr19:11169365-11169636(+)$1	1	15	24	12.4310
).)))))))	chr16:87736083-87736342(-)$1	1	103	112	12.6034
.))))))..	chr16:89469276-89469525(-)$1	1	220	229	11.6551
(((((((..	chr8:94747774-94748010(-)$1	1	23	32	10.5344
.((((....	chr2:236544899-236545140(+)$1	1	126	135	11.4827
..((((..(	chr18:75689420-75689658(-)$1	1	188	197	12.1724
))..)).))	chr13:92000687-92000954(+)$1	1	139	148	12.7758
(((((((((	chr16:89465246-89465497(-)$1	1	137	146	13.0344
.))))))..	chr20:29519393-29519612(-)$1	1	202	211	10.7068
...((((((	chr1:2162574-2162819(+)$1	1	100	109	15.0172
(((....))	chr9:134350659-134350947(+)$1	1	29	38	11.4827
....)))))	chr7:57710565-57710820(-)$1	1	135	144	12.7758
(((((((((	chr1:2201595-2201896(+)$1	1	62	71	11.9137
((.((((((	chr9:138752650-138752986(-)$1	1	58	67	12.0000
...((((((	chr13:114186641-114186937(+)$1	1	74	83	11.3103
)...)))))	chr12:133135024-133135296(+)$1	1	258	267	11.9137
...))))).	chr8:144999533-144999816(-)$1	1	268	277	11.3103
((.((((.(	chr2:112022619-112022929(-)$1	1	43	52	11.3965
..)))).))	chr12:133127768-133128023(+)$1	1	195	204	12.4310
)))))))).	chr16:89034354-89034641(-)$1	1	97	106	12.2586
((((.((((	chr16:1366787-1367029(+)$1	1	58	67	11.5689
)).))))))	chr22:49903012-49903269(-)$1	1	236	245	12.2586
((((((((.	chr1:2215906-2216147(+)$1	1	92	101	15.6206
.(((((.(.	chr1:2215010-2215267(+)$1	1	16	25	11.9137
)))))))).	chr19:2269974-2270211(+)$1	1	58	67	11.3103
..(((((.(	chr1:1028280-1028521(-)$1	1	165	174	16.2241

#PSSM
C : 0.29	G : 0.27	U : 0.13	c : 0.12	A : 0.08	u : 0.05	g : 0.01	a : 0.01	
U : 0.68	u : 0.15	G : 0.05	A : 0.03	g : 0.03	C : 0.03	
G : 0.77	g : 0.18	U : 0.03	
G : 0.77	g : 0.17	A : 0.01	U : 0.01	c : 0.01	
G : 0.77	g : 0.13	C : 0.03	u : 0.03	c : 0.01	
C : 0.67	c : 0.17	G : 0.10	g : 0.01	U : 0.01	A : 0.01	
U : 0.65	u : 0.17	C : 0.08	G : 0.06	a : 0.01	
C : 0.67	c : 0.17	G : 0.06	U : 0.05	A : 0.01	g : 0.01	
U : 0.25	C : 0.25	A : 0.20	G : 0.08	u : 0.06	c : 0.05	a : 0.03	g : 0.03	

#score	732.7241379310344
#seq	58
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_transcript_m3_run2.nuc.txt

#NT
UCUG	chr8:125562068-125562300(+)$1	232	152	156	12.0000
UCUG	chr19:50437002-50437268(+)$1	266	115	119	12.0000
UCUG	chr1:8923234-8923464(-)$1	230	38	42	12.0000
UCUG	chr4:110745470-110745698(+)$1	228	67	71	12.0000
UCUG	chr14:70238223-70238472(+)$1	249	34	38	12.0000
UCUG	chr5:177022793-177023064(+)$1	271	177	181	12.0000
UCUG	chr12:49521468-49521707(-)$1	239	46	50	12.0000
UCug	chr6:33377461-33377722(+)$1	261	19	23	12.0000
UCUG	chrX:153626632-153626836(+)$1	204	162	166	12.0000
UCUG	chr3:52029771-52030010(-)$1	239	231	235	12.0000
ucug	chr5:53634305-53634553(+)$1	248	231	235	12.0000
UCUG	chr2:176042833-176043077(-)$1	244	2	6	12.0000
UCUG	chr7:99690351-99690706(-)$1	355	23	27	12.0000
ucug	chr8:91269472-91269746(+)$1	274	203	207	12.0000
UCUG	chrX:77160588-77160875(+)$1	287	12	16	12.0000
UCUG	chr10:73576388-73576660(-)$1	272	65	69	12.0000
UCUG	chr10:73576107-73576341(-)$1	234	47	51	12.0000
ucug	chr8:91269015-91269235(+)$1	220	70	74	12.0000
UCUG	chr3:101405414-101405657(-)$1	243	195	199	12.0000
ucug	chr8:91271957-91272193(+)$1	236	63	67	12.0000
UCUG	chr16:204215-204475(+)$1	260	157	161	12.0000
UCUG	chr7:97481392-97481639(-)$1	247	24	28	12.0000
UCUG	chr19:18499786-18500049(+)$1	263	83	87	12.0000
UCUG	chrX:154006897-154007193(-)$1	296	163	167	12.0000
UCUG	chr8:58118255-58118530(+)$1	275	150	154	12.0000
UCUG	chr14:50052948-50053193(-)$1	245	45	49	12.0000
UCUG	chr8:99057634-99057850(-)$1	216	9	13	12.0000
UCUG	chr19:42375316-42375547(+)$1	231	174	178	12.0000
UCUG	chr16:56643216-56643470(+)$1	254	9	13	12.0000
UCUG	chr2:217366035-217366277(+)$1	242	185	189	12.0000
UCUG	chr17:56408159-56408411(-)$1	252	5	9	12.0000
UCUG	chr3:128888890-128889156(-)$1	266	20	24	12.0000
UCUG	chr11:62295148-62295394(-)$1	246	118	122	12.0000
UCUG	chr9:19380098-19380330(-)$1	232	36	40	12.0000
UCUG	chr5:159855550-159855833(+)$1	283	59	63	12.0000
UCUG	chr11:5289673-5289907(-)$1	234	106	110	12.0000
UCUG	chr11:5274406-5274688(-)$1	282	224	228	12.0000
UCUG	chr7:75695728-75696006(+)$1	278	143	147	12.0000
UCUG	chr19:46318625-46318897(-)$1	272	253	257	12.0000
UCUG	chr3:197677706-197677937(+)$1	231	135	139	12.0000
UCUG	chr11:5269494-5269750(-)$1	256	204	208	12.0000
ucug	chr7:120887477-120887718(+)$1	241	228	232	12.0000
UCUG	chr2:55459723-55459945(+)$1	222	115	119	12.0000
UCUG	chrX:153609563-153609816(+)$1	253	9	13	12.0000
UCUG	chr11:63743841-63744091(+)$1	250	70	74	12.0000
UCUG	chr4:39460409-39460616(-)$1	207	117	121	12.0000
UCUG	chr16:1749181-1749427(+)$1	246	9	13	12.0000
UCUG	chr17:79991706-79991976(+)$1	270	159	163	12.0000
UCUG	chr6:31802691-31802931(+)$1	240	199	203	12.0000
UCUG	chr8:100904038-100904283(-)$1	245	75	79	12.0000
UCUG	chr19:19638837-19639090(+)$1	253	157	161	12.0000
UCUG	chr7:120898494-120898734(+)$1	240	117	121	12.0000
UCUG	chr1:150192912-150193165(-)$1	253	202	206	12.0000
UCUG	chr1:24018199-24018420(+)$1	221	28	32	12.0000
UCUG	chr19:39926454-39926687(-)$1	233	176	180	12.0000
UCUG	chr1:165624588-165624835(+)$1	247	87	91	12.0000
UCUG	chr16:89627017-89627221(+)$1	204	21	25	12.0000
UCUG	chr16:89038935-89039188(-)$1	253	70	74	12.0000
UCUG	chr22:50037546-50037799(-)$1	253	117	121	12.0000
UCUG	chr6:43745343-43745621(+)$1	278	158	162	12.0000
UCUG	chr22:50010530-50010795(-)$1	265	110	114	12.0000
UCUG	chr5:85916384-85916670(+)$1	286	44	48	12.0000
UCUG	chr11:75116575-75116818(+)$1	243	41	45	12.0000
UCUG	chr11:5291016-5291268(-)$1	252	98	102	12.0000
UCUG	chr3:128888981-128889204(-)$1	223	68	72	12.0000
UCUG	chr11:5269404-5269622(-)$1	218	76	80	12.0000
UCUG	chr5:132203079-132203289(+)$1	210	74	78	12.0000
UCUG	chr11:57509590-57509821(+)$1	231	7	11	12.0000
UCUG	chr20:60963423-60963648(+)$1	225	168	172	12.0000
UCUG	chr20:2442301-2442542(-)$1	241	86	90	12.0000
UCUG	chr5:137088283-137088561(-)$1	278	74	78	12.0000
UCUG	chr1:8921264-8921549(-)$1	285	11	15	12.0000

#otherMatches

#Struct PSSM
FFFF	chr12:56119495-56119741(-)$1	246	22	26	12.0000
[bbe	chr8:125562068-125562300(+)$1	232	152	156	12.0000
ddd3	chr19:50437002-50437268(+)$1	266	115	119	12.0000
eeee	chr1:8923234-8923464(-)$1	230	38	42	12.0000
:ddd	chr4:110745470-110745698(+)$1	228	67	71	12.0000
pp==	chr14:70238223-70238472(+)$1	249	34	38	12.0000
:::F	chr5:177022793-177023064(+)$1	271	177	181	12.0000
I{DD	chr12:49521468-49521707(-)$1	239	46	50	12.0000
CCCS	chr6:33377461-33377722(+)$1	261	19	23	12.0000
HHHH	chrX:153626632-153626836(+)$1	204	162	166	12.0000
na]e	chr3:52029771-52030010(-)$1	239	231	235	12.0000
GZZZ	chr5:53634305-53634553(+)$1	248	231	235	12.0000
GGGG	chr2:176042833-176043077(-)$1	244	2	6	12.0000
====	chr7:99690351-99690706(-)$1	355	23	27	12.0000
HHH~	chr8:91269472-91269746(+)$1	274	203	207	12.0000
eeee	chrX:77160588-77160875(+)$1	287	12	16	12.0000
qqqq	chr10:73576388-73576660(-)$1	272	65	69	12.0000
[eee	chr10:73576107-73576341(-)$1	234	47	51	12.0000
ssss	chr8:91269015-91269235(+)$1	220	70	74	12.0000
ffff	chr3:101405414-101405657(-)$1	243	195	199	12.0000
gggC	chr8:91271957-91272193(+)$1	236	63	67	12.0000
uuuu	chr16:204215-204475(+)$1	260	157	161	12.0000
IIII	chr7:97481392-97481639(-)$1	247	24	28	12.0000
]eee	chr19:18499786-18500049(+)$1	263	83	87	12.0000
cddd	chrX:154006897-154007193(-)$1	296	163	167	12.0000
eeem	chr8:58118255-58118530(+)$1	275	150	154	12.0000
!a[g	chr14:50052948-50053193(-)$1	245	45	49	12.0000
FFFF	chr8:99057634-99057850(-)$1	216	9	13	12.0000
iiii	chr19:42375316-42375547(+)$1	231	174	178	12.0000
gggg	chr16:56643216-56643470(+)$1	254	9	13	12.0000
HHHH	chr2:217366035-217366277(+)$1	242	185	189	12.0000
eee[	chr17:56408159-56408411(-)$1	252	5	9	12.0000
NNNN	chr3:128888890-128889156(-)$1	266	20	24	12.0000
bbgg	chr11:62295148-62295394(-)$1	246	118	122	12.0000
e###	chr9:19380098-19380330(-)$1	232	36	40	12.0000
fff]	chr5:159855550-159855833(+)$1	283	59	63	12.0000
:::c	chr11:5289673-5289907(-)$1	234	106	110	12.0000
qqqq	chr11:5274406-5274688(-)$1	282	224	228	12.0000
333c	chr7:75695728-75696006(+)$1	278	143	147	12.0000
BBEE	chr19:46318625-46318897(-)$1	272	253	257	12.0000
=[ee	chr3:197677706-197677937(+)$1	231	135	139	12.0000
FFFF	chr11:5269494-5269750(-)$1	256	204	208	12.0000
dddd	chr7:120887477-120887718(+)$1	241	228	232	12.0000
ccc4	chr2:55459723-55459945(+)$1	222	115	119	12.0000
JJJJ	chrX:153609563-153609816(+)$1	253	9	13	12.0000
66dd	chr11:63743841-63744091(+)$1	250	70	74	12.0000
=:DD	chr4:39460409-39460616(-)$1	207	117	121	12.0000
ff!!	chr16:1749181-1749427(+)$1	246	9	13	12.0000
2eee	chr17:79991706-79991976(+)$1	270	159	163	12.0000
gggg	chr6:31802691-31802931(+)$1	240	199	203	12.0000
mmme	chr8:100904038-100904283(-)$1	245	75	79	12.0000
+++d	chr19:19638837-19639090(+)$1	253	157	161	12.0000
CCYY	chr7:120898494-120898734(+)$1	240	117	121	12.0000
eeee	chr1:150192912-150193165(-)$1	253	202	206	12.0000
VVVV	chr1:24018199-24018420(+)$1	221	28	32	12.0000
nnnn	chr19:39926454-39926687(-)$1	233	176	180	12.0000
:fff	chr1:165624588-165624835(+)$1	247	87	91	12.0000
f::b	chr16:89627017-89627221(+)$1	204	21	25	12.0000
[bb#	chr16:89038935-89039188(-)$1	253	70	74	12.0000
pppp	chr22:50037546-50037799(-)$1	253	117	121	12.0000
hhh]	chr6:43745343-43745621(+)$1	278	158	162	12.0000
}DDD	chr22:50010530-50010795(-)$1	265	110	114	12.0000
iiii	chr5:85916384-85916670(+)$1	286	44	48	12.0000
pppp	chr11:75116575-75116818(+)$1	243	41	45	12.0000
peee	chr11:5291016-5291268(-)$1	252	98	102	12.0000
###d	chr3:128888981-128889204(-)$1	223	68	72	12.0000
::DD	chr11:5269404-5269622(-)$1	218	76	80	12.0000
KKDD	chr5:132203079-132203289(+)$1	210	74	78	12.0000
:CCC	chr11:57509590-57509821(+)$1	231	7	11	12.0000
eeee	chr20:60963423-60963648(+)$1	225	168	172	12.0000
d!!b	chr20:2442301-2442542(-)$1	241	86	90	12.0000
ddd]	chr5:137088283-137088561(-)$1	278	74	78	12.0000
eeee	chr1:8921264-8921549(-)$1	285	11	15	12.0000

#DB
((((	chr12:56119495-56119741(-)$1	1	22	26	12.0000
.(((	chr8:125562068-125562300(+)$1	1	152	156	12.0000
))).	chr19:50437002-50437268(+)$1	1	115	119	12.0000
))))	chr1:8923234-8923464(-)$1	1	38	42	12.0000
.(((	chr4:110745470-110745698(+)$1	1	67	71	12.0000
..))	chr14:70238223-70238472(+)$1	1	34	38	12.0000
...)	chr5:177022793-177023064(+)$1	1	177	181	12.0000
(.((	chr12:49521468-49521707(-)$1	1	46	50	12.0000
(((.	chr6:33377461-33377722(+)$1	1	19	23	12.0000
))))	chrX:153626632-153626836(+)$1	1	162	166	12.0000
.).)	chr3:52029771-52030010(-)$1	1	231	235	12.0000
)...	chr5:53634305-53634553(+)$1	1	231	235	12.0000
((((	chr2:176042833-176043077(-)$1	1	2	6	12.0000
))))	chr7:99690351-99690706(-)$1	1	23	27	12.0000
))).	chr8:91269472-91269746(+)$1	1	203	207	12.0000
))))	chrX:77160588-77160875(+)$1	1	12	16	12.0000
....	chr10:73576388-73576660(-)$1	1	65	69	12.0000
.(((	chr10:73576107-73576341(-)$1	1	47	51	12.0000
....	chr8:91269015-91269235(+)$1	1	70	74	12.0000
))))	chr3:101405414-101405657(-)$1	1	195	199	12.0000
)))(	chr8:91271957-91272193(+)$1	1	63	67	12.0000
....	chr16:204215-204475(+)$1	1	157	161	12.0000
((((	chr7:97481392-97481639(-)$1	1	24	28	12.0000
.)))	chr19:18499786-18500049(+)$1	1	83	87	12.0000
((((	chrX:154006897-154007193(-)$1	1	163	167	12.0000
(((.	chr8:58118255-58118530(+)$1	1	150	154	12.0000
.(.(	chr14:50052948-50053193(-)$1	1	45	49	12.0000
((((	chr8:99057634-99057850(-)$1	1	9	13	12.0000
((((	chr19:42375316-42375547(+)$1	1	174	178	12.0000
((((	chr16:56643216-56643470(+)$1	1	9	13	12.0000
))))	chr2:217366035-217366277(+)$1	1	185	189	12.0000
(((.	chr17:56408159-56408411(-)$1	1	5	9	12.0000
....	chr3:128888890-128889156(-)$1	1	20	24	12.0000
))))	chr11:62295148-62295394(-)$1	1	118	122	12.0000
(...	chr9:19380098-19380330(-)$1	1	36	40	12.0000
))).	chr5:159855550-159855833(+)$1	1	59	63	12.0000
...(	chr11:5289673-5289907(-)$1	1	106	110	12.0000
....	chr11:5274406-5274688(-)$1	1	224	228	12.0000
...)	chr7:75695728-75696006(+)$1	1	143	147	12.0000
))))	chr19:46318625-46318897(-)$1	1	253	257	12.0000
(.((	chr3:197677706-197677937(+)$1	1	135	139	12.0000
))))	chr11:5269494-5269750(-)$1	1	204	208	12.0000
))))	chr7:120887477-120887718(+)$1	1	228	232	12.0000
))).	chr2:55459723-55459945(+)$1	1	115	119	12.0000
((((	chrX:153609563-153609816(+)$1	1	9	13	12.0000
..))	chr11:63743841-63744091(+)$1	1	70	74	12.0000
).))	chr4:39460409-39460616(-)$1	1	117	121	12.0000
((..	chr16:1749181-1749427(+)$1	1	9	13	12.0000
.)))	chr17:79991706-79991976(+)$1	1	159	163	12.0000
))))	chr6:31802691-31802931(+)$1	1	199	203	12.0000
...)	chr8:100904038-100904283(-)$1	1	75	79	12.0000
...(	chr19:19638837-19639090(+)$1	1	157	161	12.0000
))..	chr7:120898494-120898734(+)$1	1	117	121	12.0000
))))	chr1:150192912-150193165(-)$1	1	202	206	12.0000
....	chr1:24018199-24018420(+)$1	1	28	32	12.0000
....	chr19:39926454-39926687(-)$1	1	176	180	12.0000
.(((	chr1:165624588-165624835(+)$1	1	87	91	12.0000
)..(	chr16:89627017-89627221(+)$1	1	21	25	12.0000
.((.	chr16:89038935-89039188(-)$1	1	70	74	12.0000
....	chr22:50037546-50037799(-)$1	1	117	121	12.0000
))).	chr6:43745343-43745621(+)$1	1	158	162	12.0000
.)))	chr22:50010530-50010795(-)$1	1	110	114	12.0000
))))	chr5:85916384-85916670(+)$1	1	44	48	12.0000
....	chr11:75116575-75116818(+)$1	1	41	45	12.0000
.)))	chr11:5291016-5291268(-)$1	1	98	102	12.0000
...(	chr3:128888981-128889204(-)$1	1	68	72	12.0000
..((	chr11:5269404-5269622(-)$1	1	76	80	12.0000
..((	chr5:132203079-132203289(+)$1	1	74	78	12.0000
.(((	chr11:57509590-57509821(+)$1	1	7	11	12.0000
))))	chr20:60963423-60963648(+)$1	1	168	172	12.0000
(..(	chr20:2442301-2442542(-)$1	1	86	90	12.0000
))).	chr5:137088283-137088561(-)$1	1	74	78	12.0000
((((	chr1:8921264-8921549(-)$1	1	11	15	12.0000

#PSSM
U : 0.93	u : 0.06	
C : 0.93	c : 0.06	
U : 0.91	u : 0.08	
G : 0.91	g : 0.08	

#score	876.0000000000006
#seq	73
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_CDS_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
EEEEEDDDD::::::ddddbb!!eeeeeffffff[bbqqqqqqqqbb]ffffff22eeeee22bb333dddd::::::GGGGGGGLLLGGGGGGG::ccc!!ddddqqqqqqqqdddd4444cccddddlllddddGGGGGGGZZZGGGGGGG::::::fffffflllffffffeeeeecccnnnnnccc55555eeeeeffffffa!!iiiiiiiiicccooooooccc333iiiiiiiii22a88888888ffffff:DDDD}EEEEEeeeee[bbppppp	chr2:186655215-186655509(-)$1	294	0	283	849.0000

#DB
(((((((((......((((((..(((((((((((.((........)).))))))..)))))..))...))))......(((((((...(((((((..(((..((((........))))....)))((((...)))))))))))...)))))))......((((((...))))))((((((((.....))).....)))))(((((((..((((((((((((......)))...)))))))))..)........)))))).)))).)))))(((((.((.....	chr2:186655215-186655509(-)$1	1	0	283	849.0000

#PSSM
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	

#score	849.0
#seq	1
#width	283
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_transcript_m2_run1.nuc.txt

#NT
CUGGCAG	chr17:79963617-79963872(+)$1	255	205	212	13.7272
CUGGCAG	chr4:1348280-1348534(+)$1	254	130	137	13.7272
CUGGCUG	chr2:219265770-219266065(+)$1	295	141	148	17.0606
CUGGAUG	chr19:939740-939999(+)$1	259	199	206	13.1969
GUGGCUG	chr17:70535125-70535406(-)$1	281	185	192	13.0454
CUGGCUU	chrX:77380605-77380860(+)$1	255	200	207	13.1212
CUGGCUA	chr2:220100254-220100501(+)$1	247	101	108	12.8939
auggcug	chr17:75473520-75473804(+)$1	284	39	46	13.2727
CUGGCAG	chr21:45739459-45739769(+)$1	310	142	149	13.7272
CUGGCUU	chr2:27458203-27458461(+)$1	258	39	46	13.1212
CUGGCAG	chrX:77380550-77380805(+)$1	255	34	41	13.7272
CAGGCUG	chr22:46683853-46684152(+)$1	299	26	33	12.5151
uuggcug	chr20:37075927-37076186(+)$1	259	71	78	13.1969
CUGACUG	chr17:79966586-79966812(+)$1	226	88	95	12.6666
CUGGCAG	chr6:158993827-158994103(+)$1	276	159	166	13.7272
CUGACUG	chr1:40029512-40029762(-)$1	250	230	237	12.6666
CUGGCUG	chr3:12953154-12953527(-)$1	373	21	28	17.0606
CUGGCUG	chr20:44526347-44526637(+)$1	290	174	181	17.0606
AUGGCUG	chr6:31936894-31937151(+)$1	257	85	92	13.2727
CUGGCCG	chr17:80187745-80187987(+)$1	242	0	7	13.1969
CUGGCGG	chr11:2157855-2158114(-)$1	259	71	78	13.1969
CUGGGUG	chr17:80187663-80187945(+)$1	282	24	31	13.1212
CUGGGUG	chr3:48671234-48671514(-)$1	280	109	116	13.1212
CAGGCUG	chr9:139698350-139698590(+)$1	240	47	54	12.5151
CUGGAUG	chr2:236415883-236416139(+)$1	256	94	101	13.1969
CUGGCUG	chr17:75304806-75305060(+)$1	254	204	211	17.0606
CUGGCUA	chr11:66394086-66394330(+)$1	244	30	37	12.8939
UUGGCUG	chr17:75370842-75371097(+)$1	255	23	30	13.1969
CAGGCUG	chr12:110376984-110377235(-)$1	251	188	195	12.5151
AUGGCUG	chr17:7125541-7125806(+)$1	265	140	147	13.2727
CUGUCUG	chr2:27258360-27258595(+)$1	235	195	202	12.5909
CUGGCUG	chr22:38209297-38209542(+)$1	245	74	81	17.0606
CUGGAUG	chr6:31727022-31727286(+)$1	264	227	234	13.1969
CUGGCUG	chr11:993049-993345(+)$1	296	197	204	17.0606
CUGCCUG	chr1:44883838-44884125(+)$1	287	75	82	12.7424
AUGGCUG	chr14:23791212-23791416(+)$1	204	85	92	13.2727
CUGGUUG	chr14:21967359-21967672(-)$1	313	6	13	12.8939
CUGGCUG	chr2:27430576-27430831(-)$1	255	75	82	17.0606
CUGGCUG	chr3:48470039-48470291(-)$1	252	3	10	17.0606
CUGGCUG	chr8:144675849-144676128(-)$1	279	154	161	17.0606
CUGCCUG	chr14:95679722-95679997(-)$1	275	83	90	12.7424
CUGGCAG	chr8:134308748-134309025(-)$1	277	4	11	13.7272
CUGGCUG	chr6:31937133-31937369(+)$1	236	97	104	17.0606
CUGGCUG	chr16:783365-783631(-)$1	266	117	124	17.0606
GUGGCUG	chr11:46760405-46760645(+)$1	240	139	146	13.0454
CUGGCUG	chr17:76115370-76115657(-)$1	287	89	96	17.0606
CUGGCUU	chr1:36766315-36766566(+)$1	251	31	38	13.1212
CUGGCAG	chr11:62566196-62566452(-)$1	256	10	17	13.7272
CUGGCUG	chr3:58097693-58097927(+)$1	234	77	84	17.0606
UUGGCUG	chr20:2640897-2641179(-)$1	282	134	141	13.1969
CUGGAUG	chr16:89590234-89590477(+)$1	243	114	121	13.1969
CUGGGUG	chr16:89266355-89266597(-)$1	242	18	25	13.1212
CUGGCAG	chr17:40271104-40271356(-)$1	252	227	234	13.7272
CUGGCUU	chr5:172755102-172755394(-)$1	292	231	238	13.1212
CUGCCUG	chr14:24113854-24114095(+)$1	241	104	111	12.7424
AUGGCUG	chr4:1348087-1348403(+)$1	316	172	179	13.2727
CUGGGUG	chr16:50583727-50583985(+)$1	258	116	123	13.1212
CUGGCUC	chr11:65211532-65211750(+)$1	218	170	177	12.8939
CUGGAUG	chr6:52374307-52374569(-)$1	262	93	100	13.1969
cuggcgg	chr17:80546251-80546517(+)$1	266	75	82	13.1969
CUGGCCG	chr17:80193554-80193808(+)$1	254	37	44	13.1969
cuggcuu	chr9:139698665-139698957(+)$1	292	218	225	13.1212
UUGGCUG	chr12:6687492-6687813(-)$1	321	62	69	13.1969
CUGGCAG	chr1:235807553-235807800(-)$1	247	181	188	13.7272
CUGGCUG	chr16:3729708-3729964(-)$1	256	54	61	17.0606

#otherMatches

#Struct PSSM
}IIIIII	chr11:2158867-2159101(-)$1	234	170	177	12.8939
ffff[bb	chr17:79963617-79963872(+)$1	255	205	212	13.7272
eeeee[c	chr4:1348280-1348534(+)$1	254	130	137	13.7272
ggg[bb!	chr2:219265770-219266065(+)$1	295	141	148	17.0606
bb[a[cc	chr19:939740-939999(+)$1	259	199	206	13.1969
llleeee	chr17:70535125-70535406(-)$1	281	185	192	13.0454
bdddd&&	chrX:77380605-77380860(+)$1	255	200	207	13.1212
ccc4444	chr2:220100254-220100501(+)$1	247	101	108	12.8939
{EEEEEg	chr17:75473520-75473804(+)$1	284	39	46	13.2727
eeeee00	chr21:45739459-45739769(+)$1	310	142	149	13.7272
]gggggg	chr2:27458203-27458461(+)$1	258	39	46	13.1212
ddddccc	chrX:77380550-77380805(+)$1	255	34	41	13.7272
ddddCCC	chr22:46683853-46684152(+)$1	299	26	33	12.5151
bb4444f	chr20:37075927-37076186(+)$1	259	71	78	13.1969
::::eee	chr17:79966586-79966812(+)$1	226	88	95	12.6666
bb]dddd	chr6:158993827-158994103(+)$1	276	159	166	13.7272
}DDDDYY	chr1:40029512-40029762(-)$1	250	230	237	12.6666
fffEEEE	chr3:12953154-12953527(-)$1	373	21	28	17.0606
33cccee	chr20:44526347-44526637(+)$1	290	174	181	17.0606
$$ccc==	chr6:31936894-31937151(+)$1	257	85	92	13.2727
bb[eeee	chr17:80187745-80187987(+)$1	242	0	7	13.1969
ccnnnnn	chr11:2157855-2158114(-)$1	259	71	78	13.1969
IIIIII{	chr17:80187663-80187945(+)$1	282	24	31	13.1212
ccccc]e	chr3:48671234-48671514(-)$1	280	109	116	13.1212
====ddd	chr9:139698350-139698590(+)$1	240	47	54	12.5151
dd22ddd	chr2:236415883-236416139(+)$1	256	94	101	13.1969
DDDDDDD	chr17:75304806-75305060(+)$1	254	204	211	17.0606
ddddlll	chr11:66394086-66394330(+)$1	244	30	37	12.8939
fff!!cc	chr17:75370842-75371097(+)$1	255	23	30	13.1969
FFFdddd	chr12:110376984-110377235(-)$1	251	188	195	12.5151
"eeeee[	chr17:7125541-7125806(+)$1	265	140	147	13.2727
ccc]ddd	chr2:27258360-27258595(+)$1	235	195	202	12.5909
ddfffff	chr22:38209297-38209542(+)$1	245	74	81	17.0606
"bbmmmm	chr6:31727022-31727286(+)$1	264	227	234	13.1969
GGIIIII	chr11:993049-993345(+)$1	296	197	204	17.0606
d!!gggg	chr1:44883838-44884125(+)$1	287	75	82	12.7424
[ddddmm	chr14:23791212-23791416(+)$1	204	85	92	13.2727
ee[ffff	chr14:21967359-21967672(-)$1	313	6	13	12.8939
c!!bb!!	chr2:27430576-27430831(-)$1	255	75	82	17.0606
::::::H	chr3:48470039-48470291(-)$1	252	3	10	17.0606
b!!dddd	chr8:144675849-144676128(-)$1	279	154	161	17.0606
vvhhhhh	chr14:95679722-95679997(-)$1	275	83	90	12.7424
FF:ccc[	chr8:134308748-134309025(-)$1	277	4	11	13.7272
d"""eee	chr6:31937133-31937369(+)$1	236	97	104	17.0606
eeee22i	chr16:783365-783631(-)$1	266	117	124	17.0606
======[	chr11:46760405-46760645(+)$1	240	139	146	13.0454
fbb[hhh	chr17:76115370-76115657(-)$1	287	89	96	17.0606
[ffffff	chr1:36766315-36766566(+)$1	251	31	38	13.1212
c[bb$$$	chr11:62566196-62566452(-)$1	256	10	17	13.7272
e]eeeee	chr3:58097693-58097927(+)$1	234	77	84	17.0606
66eeeee	chr20:2640897-2641179(-)$1	282	134	141	13.1969
hffffff	chr16:89590234-89590477(+)$1	243	114	121	13.1969
iiiiimm	chr16:89266355-89266597(-)$1	242	18	25	13.1212
pppppdd	chr17:40271104-40271356(-)$1	252	227	234	13.7272
CCYYEEE	chr5:172755102-172755394(-)$1	292	231	238	13.1212
DDDD}A}	chr14:24113854-24114095(+)$1	241	104	111	12.7424
c:dddd"	chr4:1348087-1348403(+)$1	316	172	179	13.2727
fffff[a	chr16:50583727-50583985(+)$1	258	116	123	13.1212
gg:DDDD	chr11:65211532-65211750(+)$1	218	170	177	12.8939
f]ccc::	chr6:52374307-52374569(-)$1	262	93	100	13.1969
gggg%%%	chr17:80546251-80546517(+)$1	266	75	82	13.1969
ffff]ee	chr17:80193554-80193808(+)$1	254	37	44	13.1969
cc]hhhh	chr9:139698665-139698957(+)$1	292	218	225	13.1212
dd!!ggg	chr12:6687492-6687813(-)$1	321	62	69	13.1969
ffffffm	chr1:235807553-235807800(-)$1	247	181	188	13.7272
:iiiiii	chr16:3729708-3729964(-)$1	256	54	61	17.0606

#DB
.))))))	chr11:2158867-2159101(-)$1	1	170	177	12.8939
((((.((	chr17:79963617-79963872(+)$1	1	205	212	13.7272
(((((.(	chr4:1348280-1348534(+)$1	1	130	137	13.7272
(((.((.	chr2:219265770-219266065(+)$1	1	141	148	17.0606
((.(.((	chr19:939740-939999(+)$1	1	199	206	13.1969
...))))	chr17:70535125-70535406(-)$1	1	185	192	13.0454
(((((..	chrX:77380605-77380860(+)$1	1	200	207	13.1212
)))....	chr2:220100254-220100501(+)$1	1	101	108	12.8939
.((((((	chr17:75473520-75473804(+)$1	1	39	46	13.2727
)))))..	chr21:45739459-45739769(+)$1	1	142	149	13.7272
.))))))	chr2:27458203-27458461(+)$1	1	39	46	13.1212
(((((((	chrX:77380550-77380805(+)$1	1	34	41	13.7272
))))(((	chr22:46683853-46684152(+)$1	1	26	33	12.5151
))....)	chr20:37075927-37076186(+)$1	1	71	78	13.1969
....(((	chr17:79966586-79966812(+)$1	1	88	95	12.6666
)).))))	chr6:158993827-158994103(+)$1	1	159	166	13.7272
.))))..	chr1:40029512-40029762(-)$1	1	230	237	12.6666
)))((((	chr3:12953154-12953527(-)$1	1	21	28	17.0606
..)))))	chr20:44526347-44526637(+)$1	1	174	181	17.0606
..(((((	chr6:31936894-31937151(+)$1	1	85	92	13.2727
((.((((	chr17:80187745-80187987(+)$1	1	0	7	13.1969
((.....	chr11:2157855-2158114(-)$1	1	71	78	13.1969
((((((.	chr17:80187663-80187945(+)$1	1	24	31	13.1212
))))).)	chr3:48671234-48671514(-)$1	1	109	116	13.1212
(((((((	chr9:139698350-139698590(+)$1	1	47	54	12.5151
))..)))	chr2:236415883-236416139(+)$1	1	94	101	13.1969
)))))))	chr17:75304806-75305060(+)$1	1	204	211	17.0606
((((...	chr11:66394086-66394330(+)$1	1	30	37	12.8939
(((..((	chr17:75370842-75371097(+)$1	1	23	30	13.1969
)))((((	chr12:110376984-110377235(-)$1	1	188	195	12.5151
.(((((.	chr17:7125541-7125806(+)$1	1	140	147	13.2727
))).)))	chr2:27258360-27258595(+)$1	1	195	202	12.5909
(((((((	chr22:38209297-38209542(+)$1	1	74	81	17.0606
.((....	chr6:31727022-31727286(+)$1	1	227	234	13.1969
)))))))	chr11:993049-993345(+)$1	1	197	204	17.0606
(..((((	chr1:44883838-44884125(+)$1	1	75	82	12.7424
.((((..	chr14:23791212-23791416(+)$1	1	85	92	13.2727
((.((((	chr14:21967359-21967672(-)$1	1	6	13	12.8939
(..((..	chr2:27430576-27430831(-)$1	1	75	82	17.0606
......(	chr3:48470039-48470291(-)$1	1	3	10	17.0606
(..((((	chr8:144675849-144676128(-)$1	1	154	161	17.0606
..)))))	chr14:95679722-95679997(-)$1	1	83	90	12.7424
((.(((.	chr8:134308748-134309025(-)$1	1	4	11	13.7272
(...(((	chr6:31937133-31937369(+)$1	1	97	104	17.0606
))))..)	chr16:783365-783631(-)$1	1	117	124	17.0606
((((((.	chr11:46760405-46760645(+)$1	1	139	146	13.0454
(((.(((	chr17:76115370-76115657(-)$1	1	89	96	17.0606
.((((((	chr1:36766315-36766566(+)$1	1	31	38	13.1212
(.((...	chr11:62566196-62566452(-)$1	1	10	17	13.7272
).)))))	chr3:58097693-58097927(+)$1	1	77	84	17.0606
..)))))	chr20:2640897-2641179(-)$1	1	134	141	13.1969
)))))))	chr16:89590234-89590477(+)$1	1	114	121	13.1969
(((((..	chr16:89266355-89266597(-)$1	1	18	25	13.1212
.....))	chr17:40271104-40271356(-)$1	1	227	234	13.7272
))..)))	chr5:172755102-172755394(-)$1	1	231	238	13.1212
)))).).	chr14:24113854-24114095(+)$1	1	104	111	12.7424
).((((.	chr4:1348087-1348403(+)$1	1	172	179	13.2727
(((((.(	chr16:50583727-50583985(+)$1	1	116	123	13.1212
)).))))	chr11:65211532-65211750(+)$1	1	170	177	12.8939
).)))..	chr6:52374307-52374569(-)$1	1	93	100	13.1969
((((...	chr17:80546251-80546517(+)$1	1	75	82	13.1969
)))).))	chr17:80193554-80193808(+)$1	1	37	44	13.1969
)).))))	chr9:139698665-139698957(+)$1	1	218	225	13.1212
((..(((	chr12:6687492-6687813(-)$1	1	62	69	13.1969
((((((.	chr1:235807553-235807800(-)$1	1	181	188	13.7272
.((((((	chr16:3729708-3729964(-)$1	1	54	61	17.0606

#PSSM
C : 0.80	A : 0.06	U : 0.04	G : 0.03	c : 0.03	a : 0.01	u : 0.01	
U : 0.89	u : 0.06	A : 0.04	
G : 0.93	g : 0.06	
G : 0.84	g : 0.06	C : 0.04	A : 0.03	U : 0.01	
C : 0.78	A : 0.07	c : 0.06	G : 0.06	U : 0.01	
U : 0.75	A : 0.13	u : 0.04	C : 0.03	G : 0.01	g : 0.01	
G : 0.81	U : 0.06	g : 0.04	C : 0.03	A : 0.03	u : 0.01	

#score	922.6666666666655
#seq	66
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_transcript_m2_run1.nuc.txt

#NT
CCCUCUCCC	chr20:61452946-61453200(+)$1	254	69	78	13.7272
CAGUCUCUG	chr21:47558470-47558713(-)$1	243	188	197	11.3636
cccucccUC	chr17:36876474-36876744(+)$1	270	119	128	14.0000
CUGUCUCUG	chr1:3395927-3396186(+)$1	259	136	145	11.5454
CCGUCGCUG	chr12:133378461-133378732(-)$1	271	138	147	12.0000
CCCUCUCCU	chr12:120591612-120591919(-)$1	307	117	126	13.0909
CCCUAUCUC	chr2:211341058-211341322(-)$1	264	145	154	13.1818
ACCUCUCUU	chr6:43042208-43042461(+)$1	253	182	191	12.7272
CUCUCUCUU	chr1:1247991-1248240(-)$1	249	137	146	12.6363
CCUUCUCUC	chr4:1805832-1806050(+)$1	218	33	42	15.1818
CCUUCUCUG	chr17:72858943-72859245(-)$1	302	92	101	16.5454
CCCCCUCUG	chr11:72470347-72470602(-)$1	255	91	100	15.3636
UCUUCUCUG	chr2:97494585-97494841(+)$1	256	22	31	12.5454
CCCUCUCUG	chrX:48891690-48891943(-)$1	253	161	170	19.0000
CCCUCGCUC	chr1:19212015-19212272(-)$1	257	82	91	13.7272
CCCUCCCUG	chr16:89960003-89960246(+)$1	243	105	114	15.3636
CCCUUCCUG	chr19:40747872-40748130(-)$1	258	26	35	11.1818
CCCUCCCUC	chr9:136645726-136646024(-)$1	298	229	238	14.0000
UCCUCUCUA	chr19:1106392-1106626(+)$1	234	71	80	12.8181
CCUUCUCUC	chr1:226050469-226050733(-)$1	264	162	171	15.1818
GCCUCCCUG	chr15:101971600-101971858(-)$1	258	105	114	11.1818
CUUUCUCUG	chr9:139292777-139293056(-)$1	279	35	44	12.1818
CCCUCUCCU	chr19:11019600-11019824(+)$1	224	17	26	13.0909
CCCUCUCUG	chr12:6638461-6638777(+)$1	316	52	61	19.0000
CCCUCACUG	chr16:4749047-4749322(-)$1	275	233	242	15.1818
CCUGCUCUG	chr8:41476224-41476514(+)$1	290	135	144	12.8181
CCCCCUCUG	chr22:50724619-50724887(-)$1	268	152	161	15.3636
CCCUUUCUC	chr19:15484780-15485073(-)$1	293	11	20	13.4545
CCUUCUCUG	chr17:73221974-73222236(+)$1	262	81	90	16.5454
CCCUCUCAA	chr8:99057231-99057472(-)$1	241	31	40	12.8181
CCCUCUCCA	chr6:31916466-31916694(+)$1	228	128	137	12.9090
CCCCCACUG	chr17:17119697-17119979(-)$1	282	6	15	11.5454
CCCUCUCAU	chr20:60736295-60736554(+)$1	259	114	123	13.0000
CCCUCUCAG	chr11:65387619-65387896(+)$1	277	71	80	15.0000
CCCGCUCUC	chrX:153690306-153690555(+)$1	249	72	81	13.9090
CCCACACUG	chr1:43142085-43142359(+)$1	274	136	145	11.5454
UCCUCUCUG	chr17:78335345-78335597(+)$1	252	176	185	15.0000
CCGUCUCUA	chr20:39796293-39796534(+)$1	241	52	61	13.7272
CCCGCUCUC	chr19:19645661-19645927(+)$1	266	193	202	13.9090
CCCUCUCUG	chr6:41554593-41554845(+)$1	252	119	128	19.0000
CCCAUUCUG	chr8:23002475-23002749(-)$1	274	12	21	11.1818
CCCACUCUA	chr17:7081825-7082057(-)$1	232	95	104	13.1818
CCUUCUCUC	chr16:30012483-30012742(+)$1	259	32	41	15.1818
CCAUCUCUC	chr19:4097246-4097494(-)$1	248	133	142	14.3636
CCCUCUCUC	chr15:91418633-91418896(+)$1	263	143	152	17.6363
CCUCCUCUG	chr16:30780627-30780895(+)$1	268	151	160	12.9090
CCUUUUCUG	chr16:15141316-15141606(-)$1	290	280	289	12.3636
CCCUCUCGG	chr9:137323529-137323775(+)$1	246	64	73	14.8181
CCCUCUCUG	chr19:15226405-15226714(-)$1	309	295	304	19.0000
CCCUCUCUG	chr16:8952229-8952493(-)$1	264	151	160	19.0000
CCUUCUCUG	chr6:31657371-31657649(-)$1	278	61	70	16.5454
CCAACUCUG	chr11:9164291-9164525(-)$1	234	43	52	12.0909
GCCUCUCUU	chr4:2746154-2746419(-)$1	265	174	183	12.8181
CCCUCUCUU	chr17:79864677-79864935(-)$1	258	143	152	17.0000

#otherMatches

#Struct PSSM
ddddbb[cc	chr6:31752405-31752671(-)$1	266	16	25	13.6363
ceeeeeooo	chr20:61452946-61453200(+)$1	254	69	78	13.7272
a[ffffff!	chr21:47558470-47558713(-)$1	243	188	197	11.3636
::::BB{HH	chr17:36876474-36876744(+)$1	270	119	128	14.0000
IIIIIIIIc	chr1:3395927-3396186(+)$1	259	136	145	11.5454
b::::FFFF	chr12:133378461-133378732(-)$1	271	138	147	12.0000
rrrrrrrff	chr12:120591612-120591919(-)$1	307	117	126	13.0909
cccffffff	chr2:211341058-211341322(-)$1	264	145	154	13.1818
doooooodd	chr6:43042208-43042461(+)$1	253	182	191	12.7272
eeccc6666	chr1:1247991-1248240(-)$1	249	137	146	12.6363
dddd[ccc!	chr4:1805832-1806050(+)$1	218	33	42	15.1818
GGGGGGG::	chr17:72858943-72859245(-)$1	302	92	101	16.5454
b]bba4444	chr11:72470347-72470602(-)$1	255	91	100	15.3636
[a!!bb!!b	chr2:97494585-97494841(+)$1	256	22	31	12.5454
ggggggccc	chrX:48891690-48891943(-)$1	253	161	170	19.0000
cc]bbccc2	chr1:19212015-19212272(-)$1	257	82	91	13.7272
eeeeecccc	chr16:89960003-89960246(+)$1	243	105	114	15.3636
LLLGGGGGG	chr19:40747872-40748130(-)$1	258	26	35	11.1818
qqqqa]eee	chr9:136645726-136646024(-)$1	298	229	238	14.0000
JJJJEEEEE	chr19:1106392-1106626(+)$1	234	71	80	12.8181
EEFFFFFFe	chr1:226050469-226050733(-)$1	264	162	171	15.1818
ddddddmmm	chr15:101971600-101971858(-)$1	258	105	114	11.1818
FFFFF::::	chr9:139292777-139293056(-)$1	279	35	44	12.1818
ffffffeee	chr19:11019600-11019824(+)$1	224	17	26	13.0909
444bb]ccc	chr12:6638461-6638777(+)$1	316	52	61	19.0000
2eeeee555	chr16:4749047-4749322(-)$1	275	233	242	15.1818
eee]eeeee	chr8:41476224-41476514(+)$1	290	135	144	12.8181
gggg:eeee	chr22:50724619-50724887(-)$1	268	152	161	15.3636
{CCC:::EE	chr19:15484780-15485073(-)$1	293	11	20	13.4545
####ccc[e	chr17:73221974-73222236(+)$1	262	81	90	16.5454
ggggg]ccc	chr8:99057231-99057472(-)$1	241	31	40	12.8181
bdddd]bb:	chr6:31916466-31916694(+)$1	228	128	137	12.9090
:::::::::	chr17:17119697-17119979(-)$1	282	6	15	11.5454
[eeeeebb!	chr20:60736295-60736554(+)$1	259	114	123	13.0000
DEEEEEeee	chr11:65387619-65387896(+)$1	277	71	80	15.0000
dddd]====	chrX:153690306-153690555(+)$1	249	72	81	13.9090
:::::::::	chr1:43142085-43142359(+)$1	274	136	145	11.5454
ddddooooo	chr17:78335345-78335597(+)$1	252	176	185	15.0000
:bbddddmm	chr20:39796293-39796534(+)$1	241	52	61	13.7272
dd>>>>>>>	chr19:19645661-19645927(+)$1	266	193	202	13.9090
ddd]fffff	chr6:41554593-41554845(+)$1	252	119	128	19.0000
QQQQQQQCC	chr8:23002475-23002749(-)$1	274	12	21	11.1818
gggg]ccc:	chr17:7081825-7082057(-)$1	232	95	104	13.1818
UUUUUUUUU	chr16:30012483-30012742(+)$1	259	32	41	15.1818
hhhhhhh##	chr19:4097246-4097494(-)$1	248	133	142	14.3636
hhhh^^^^^	chr15:91418633-91418896(+)$1	263	143	152	17.6363
#cccdddd!	chr16:30780627-30780895(+)$1	268	151	160	12.9090
dddd22bb:	chr16:15141316-15141606(-)$1	290	280	289	12.3636
ffnnnnnff	chr9:137323529-137323775(+)$1	246	64	73	14.8181
dddnnnnnd	chr19:15226405-15226714(-)$1	309	295	304	19.0000
cabb[cccm	chr16:8952229-8952493(-)$1	264	151	160	19.0000
eee"""ann	chr6:31657371-31657649(-)$1	278	61	70	16.5454
ssssssssg	chr11:9164291-9164525(-)$1	234	43	52	12.0909
DDDD::FFF	chr4:2746154-2746419(-)$1	265	174	183	12.8181
!bboooooo	chr17:79864677-79864935(-)$1	258	143	152	17.0000

#DB
((((((.((	chr6:31752405-31752671(-)$1	1	16	25	13.6363
((((((...	chr20:61452946-61453200(+)$1	1	69	78	13.7272
(.((((((.	chr21:47558470-47558713(-)$1	1	188	197	11.3636
....((.((	chr17:36876474-36876744(+)$1	1	119	128	14.0000
(((((((((	chr1:3395927-3396186(+)$1	1	136	145	11.5454
)....((((	chr12:133378461-133378732(-)$1	1	138	147	12.0000
.......))	chr12:120591612-120591919(-)$1	1	117	126	13.0909
)))))))))	chr2:211341058-211341322(-)$1	1	145	154	13.1818
(......))	chr6:43042208-43042461(+)$1	1	182	191	12.7272
)))))....	chr1:1247991-1248240(-)$1	1	137	146	12.6363
((((.(((.	chr4:1805832-1806050(+)$1	1	33	42	15.1818
(((((((..	chr17:72858943-72859245(-)$1	1	92	101	16.5454
).)))....	chr11:72470347-72470602(-)$1	1	91	100	15.3636
.(..((..(	chr2:97494585-97494841(+)$1	1	22	31	12.5454
))))))(((	chrX:48891690-48891943(-)$1	1	161	170	19.0000
)).))))).	chr1:19212015-19212272(-)$1	1	82	91	13.7272
))))))))(	chr16:89960003-89960246(+)$1	1	105	114	15.3636
...((((((	chr19:40747872-40748130(-)$1	1	26	35	11.1818
....).)))	chr9:136645726-136646024(-)$1	1	229	238	14.0000
(((((((((	chr19:1106392-1106626(+)$1	1	71	80	12.8181
))(((((((	chr1:226050469-226050733(-)$1	1	162	171	15.1818
((((((...	chr15:101971600-101971858(-)$1	1	105	114	11.1818
(((((....	chr9:139292777-139293056(-)$1	1	35	44	12.1818
(((((((((	chr19:11019600-11019824(+)$1	1	17	26	13.0909
...)).)))	chr12:6638461-6638777(+)$1	1	52	61	19.0000
.)))))...	chr16:4749047-4749322(-)$1	1	233	242	15.1818
))).)))))	chr8:41476224-41476514(+)$1	1	135	144	12.8181
)))).((((	chr22:50724619-50724887(-)$1	1	152	161	15.3636
.(((...((	chr19:15484780-15485073(-)$1	1	11	20	13.4545
....(((.(	chr17:73221974-73222236(+)$1	1	81	90	16.5454
))))).)))	chr8:99057231-99057472(-)$1	1	31	40	12.8181
))))).)).	chr6:31916466-31916694(+)$1	1	128	137	12.9090
.........	chr17:17119697-17119979(-)$1	1	6	15	11.5454
.(((((((.	chr20:60736295-60736554(+)$1	1	114	123	13.0000
(((((((((	chr11:65387619-65387896(+)$1	1	71	80	15.0000
)))).))))	chrX:153690306-153690555(+)$1	1	72	81	13.9090
.........	chr1:43142085-43142359(+)$1	1	136	145	11.5454
((((.....	chr17:78335345-78335597(+)$1	1	176	185	15.0000
.((((((..	chr20:39796293-39796534(+)$1	1	52	61	13.7272
)).......	chr19:19645661-19645927(+)$1	1	193	202	13.9090
))).)))))	chr6:41554593-41554845(+)$1	1	119	128	19.0000
.......((	chr8:23002475-23002749(-)$1	1	12	21	11.1818
)))).))).	chr17:7081825-7082057(-)$1	1	95	104	13.1818
.........	chr16:30012483-30012742(+)$1	1	32	41	15.1818
(((((((..	chr19:4097246-4097494(-)$1	1	133	142	14.3636
((((.....	chr15:91418633-91418896(+)$1	1	143	152	17.6363
.(((((((.	chr16:30780627-30780895(+)$1	1	151	160	12.9090
))))..)).	chr16:15141316-15141606(-)$1	1	280	289	12.3636
((.....))	chr9:137323529-137323775(+)$1	1	64	73	14.8181
(((.....)	chr19:15226405-15226714(-)$1	1	295	304	19.0000
((((.(((.	chr16:8952229-8952493(-)$1	1	151	160	19.0000
(((...(..	chr6:31657371-31657649(-)$1	1	61	70	16.5454
........)	chr11:9164291-9164525(-)$1	1	43	52	12.0909
))))..(((	chr4:2746154-2746419(-)$1	1	174	183	12.8181
.((......	chr17:79864677-79864935(-)$1	1	143	152	17.0000

#PSSM
C : 0.85	U : 0.07	G : 0.03	c : 0.01	A : 0.01	
C : 0.90	U : 0.05	A : 0.01	c : 0.01	
C : 0.67	U : 0.20	G : 0.07	A : 0.03	c : 0.01	
U : 0.78	C : 0.07	A : 0.07	G : 0.05	u : 0.01	
C : 0.89	U : 0.07	c : 0.01	A : 0.01	
U : 0.81	C : 0.07	A : 0.05	G : 0.03	c : 0.01	
C : 0.98	c : 0.01	
U : 0.85	C : 0.07	A : 0.05	G : 0.01	
G : 0.52	C : 0.25	U : 0.12	A : 0.09	

#score	778.0909090909093
#seq	55
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_CDS_m1_run1.nuc.txt

#NT
CCACCUCCCCACCU	chr19:36211769-36212012(+)$1	243	182	196	22.0847
CCCCAUCCCCGCCC	chr19:3574157-3574474(+)$1	317	123	137	23.9491
CCCCCUCCCUCCCC	chr22:38051587-38051878(+)$1	291	136	150	24.7118
CCCCCGCCCUGCCC	chr17:7751102-7751358(+)$1	256	36	50	20.9830
CCCCCUCCGCCGCC	chr6:138752376-138752624(-)$1	248	56	70	22.0847
CCCCUUCCCUACCC	chr2:242694520-242694828(+)$1	308	259	273	22.3389
ACCCCUCCCCUUCC	chr12:7046044-7046366(+)$1	322	145	159	20.6440
cccccuucccAGCU	chr12:7045611-7045869(+)$1	258	8	22	19.2033
GCCCCUUCCCCCCC	chr8:145065547-145065774(+)$1	227	163	177	20.7288
CCCCCUCCCCCAAC	chr19:2248368-2248634(+)$1	266	156	170	20.8135
ccgccuccccagca	chr19:15355130-15355407(-)$1	277	59	73	18.6949
CCCCCACCGCUCCC	chr19:41255378-41255632(-)$1	254	80	94	21.8305
CCCCCUCCCCAGGC	chr3:12942671-12942964(-)$1	293	74	88	22.7627
cccccuccccaccc	chr19:5231496-5231754(-)$1	258	66	80	30.0508
cccucuucccaccc	chr20:2816670-2816938(-)$1	268	140	154	21.4915
CCACCUCCCUUCCC	chr7:73011844-73012092(-)$1	248	211	225	20.2203
CCCCCUCCCCUGCC	chr12:57919476-57919716(+)$1	240	79	93	25.3050
UCCCCUCCCCACCC	chr11:10828728-10828969(-)$1	241	63	77	25.8983
CCCCCUCCUCCCCC	chr1:27736165-27736439(-)$1	274	118	132	25.3898
CCCCCUCGCCCCCC	chr3:47452428-47452701(+)$1	273	151	165	24.3728
cacccaccccagcc	chrX:129147781-129148014(+)$1	233	114	128	20.0508
CCCCGUCCCCCGCC	chr7:72412565-72412826(+)$1	261	50	64	21.9999
CCACCUCCCUUCCC	chr7:73011732-73011971(-)$1	239	90	104	20.2203
CCCCCUCCUCCCCC	chr1:27736239-27736554(-)$1	315	233	247	25.3898
CCCCAUCCCCAACC	chr17:42475035-42475330(-)$1	295	74	88	23.1016
CCCCACCCCCACCC	chr6:33166980-33167258(-)$1	278	182	196	23.7796
CCACCCCCACACCC	chr16:30750211-30750445(+)$1	234	51	65	19.7966
ccccacccccaccc	chr1:153604195-153604505(+)$1	310	233	247	23.7796
ACCCCGCCCCACCC	chr2:242756716-242756994(+)$1	278	199	213	23.3559
gccccgccccgccc	chr19:35632158-35632490(+)$1	332	89	103	21.0677
CCCCCUCACCCACC	chr9:37486314-37486721(+)$1	407	45	59	21.0677
CCCCCAUCCCACCC	chr19:14203501-14203721(-)$1	220	193	207	23.4406
CCCCCACCCCUCCA	chr16:2577649-2577889(+)$1	240	28	42	21.3220
cccccuccuccccc	chr19:3056242-3056500(-)$1	258	231	245	25.3898
CCACGCCCCCACCC	chr22:18301422-18301750(-)$1	328	75	89	19.6271
CCCUCACCCCAGCC	chr9:139849621-139849931(+)$1	310	36	50	20.2203
CCCCCAGCCCACCC	chr5:175957875-175958120(-)$1	245	205	219	23.2711
CCCCCACUUCACCC	chr17:7416336-7416647(+)$1	311	93	107	20.1355
CCUCCUCCUCCCCC	chr5:140953097-140953428(-)$1	331	154	168	21.0677
CCCCCGCCCCAUCC	chr7:73011594-73011839(-)$1	245	208	222	23.8644
cccccuccuccccc	chr2:204305801-204306064(-)$1	263	81	95	25.3898
CCCCCUCCCCUCCC	chr19:6731418-6731668(-)$1	250	74	88	28.1016
GCCCCUCUCCUCCC	chr16:24942279-24942599(-)$1	320	0	14	20.1355
CCCCCUACACACCC	chr3:47452252-47452522(+)$1	270	71	85	22.0847
ccccAGCCCCACCU	chr19:16940357-16940707(+)$1	350	76	90	19.7118
cccccucucacccc	chr3:47459103-47459380(-)$1	277	8	22	20.1355
CCCCCAGCCCACCC	chr5:175957824-175958052(-)$1	228	137	151	23.2711
CCCCCCCCUCCCCC	chr16:67267637-67267939(-)$1	302	80	94	22.7627
cccccccaccaccc	chr16:30675503-30675810(+)$1	307	217	231	23.1864
ACCCCUCCACAGCC	chr9:96021607-96021939(+)$1	332	34	48	19.6271
GCCCGCCCCCACCC	chr11:68029469-68029748(-)$1	279	134	148	19.7966
cccccuccccaccc	chr19:36212046-36212399(+)$1	353	91	105	30.0508
CCCCCUCCCCCAAC	chr19:2248274-2248555(+)$1	281	250	264	20.8135
CCCCUUCCCUACCC	chr2:242694776-242695031(+)$1	255	3	17	22.3389
CACCUUCCCCACCC	chr1:33236754-33237030(+)$1	276	214	228	21.5762
CCCCCUCGUCAGCC	chr16:4658834-4659076(-)$1	242	7	21	19.7966
CCCUCUCCCCACGC	chr12:7045311-7045590(+)$1	279	106	120	21.0677
cccccgccccuccu	chr17:7311412-7311683(+)$1	271	49	63	21.4067

#otherMatches

#Struct PSSM
cccttttttttttt	chr22:20937029-20937297(+)$1	268	23	37	22.2542
::::::::::::::	chr19:36211769-36212012(+)$1	243	182	196	22.0847
^^^^^^^^^^^^^^	chr19:3574157-3574474(+)$1	317	123	137	23.9491
:::HHHHHHHH:::	chr22:38051587-38051878(+)$1	291	136	150	24.7118
:::::ccc!!ffff	chr17:7751102-7751358(+)$1	256	36	50	20.9830
:::::::::::bb[	chr6:138752376-138752624(-)$1	248	56	70	22.0847
:::::::::::eee	chr2:242694520-242694828(+)$1	308	259	273	22.3389
::::::::::::::	chr12:7046044-7046366(+)$1	322	145	159	20.6440
::::::::::::::	chr12:7045611-7045869(+)$1	258	8	22	19.2033
eeeeccc0000000	chr8:145065547-145065774(+)$1	227	163	177	20.7288
c^^^^^^^^^^^^^	chr19:2248368-2248634(+)$1	266	156	170	20.8135
33dddd:::::bb[	chr19:15355130-15355407(-)$1	277	59	73	18.6949
88888888eeeee:	chr19:41255378-41255632(-)$1	254	80	94	21.8305
:::::::::::CCC	chr3:12942671-12942964(-)$1	293	74	88	22.7627
::::::::::::::	chr19:5231496-5231754(-)$1	258	66	80	30.0508
::::::::::::::	chr20:2816670-2816938(-)$1	268	140	154	21.4915
::::::::::::::	chr7:73011844-73012092(-)$1	248	211	225	20.2203
:HHHHHHHHKKEEE	chr12:57919476-57919716(+)$1	240	79	93	25.3050
:::::FFFFFFDDD	chr11:10828728-10828969(-)$1	241	63	77	25.8983
ssssssssssdddd	chr1:27736165-27736439(-)$1	274	118	132	25.3898
ff:::::ccc[a""	chr3:47452428-47452701(+)$1	273	151	165	24.3728
dddd666666ccc:	chrX:129147781-129148014(+)$1	233	114	128	20.0508
ff::CCC:::::::	chr7:72412565-72412826(+)$1	261	50	64	21.9999
^^^^^^^^^^^^^^	chr7:73011732-73011971(-)$1	239	90	104	20.2203
ssssssssssdddd	chr1:27736239-27736554(-)$1	315	233	247	25.3898
::::::::::::::	chr17:42475035-42475330(-)$1	295	74	88	23.1016
iiiii+++++++++	chr6:33166980-33167258(-)$1	278	182	196	23.7796
c^^^^^^^^^^^^^	chr16:30750211-30750445(+)$1	234	51	65	19.7966
ccc^^^^^^^^^^^	chr1:153604195-153604505(+)$1	310	233	247	23.7796
ooooobb:::::::	chr2:242756716-242756994(+)$1	278	199	213	23.3559
cc::::::::cccv	chr19:35632158-35632490(+)$1	332	89	103	21.0677
ttttttttttbb]d	chr9:37486314-37486721(+)$1	407	45	59	21.0677
ddd333dddd::::	chr19:14203501-14203721(-)$1	220	193	207	23.4406
ddccc:dddd[ddd	chr16:2577649-2577889(+)$1	240	28	42	21.3220
::::::::::::::	chr19:3056242-3056500(-)$1	258	231	245	25.3898
DD{CCCAKKBB{DD	chr22:18301422-18301750(-)$1	328	75	89	19.6271
::::::::eeeee^	chr9:139849621-139849931(+)$1	310	36	50	20.2203
:eeeeebbcccooo	chr5:175957875-175958120(-)$1	245	205	219	23.2711
::::::::::::::	chr17:7416336-7416647(+)$1	311	93	107	20.1355
"""eeeee++++++	chr5:140953097-140953428(-)$1	331	154	168	21.0677
bb333ffffff:::	chr7:73011594-73011839(-)$1	245	208	222	23.8644
::::::::::::::	chr2:204305801-204306064(-)$1	263	81	95	25.3898
D:::::::::::::	chr19:6731418-6731668(-)$1	250	74	88	28.1016
BBOOOOOOEEEEE:	chr16:24942279-24942599(-)$1	320	0	14	20.1355
::::::::::::::	chr3:47452252-47452522(+)$1	270	71	85	22.0847
cmmmmccc::::::	chr19:16940357-16940707(+)$1	350	76	90	19.7118
ccc[eeeee$$$$$	chr3:47459103-47459380(-)$1	277	8	22	20.1355
^^^^^^^^^^^^^^	chr5:175957824-175958052(-)$1	228	137	151	23.2711
rrrrrrreeeee::	chr16:67267637-67267939(-)$1	302	80	94	22.7627
F:::::::::::::	chr16:30675503-30675810(+)$1	307	217	231	23.1864
mmeeeee::DDDD:	chr9:96021607-96021939(+)$1	332	34	48	19.6271
bbdddd333dddd5	chr11:68029469-68029748(-)$1	279	134	148	19.7966
EEE:::::::::::	chr19:36212046-36212399(+)$1	353	91	105	30.0508
ddd:::::::::::	chr19:2248274-2248555(+)$1	281	250	264	20.8135
::::::::::::::	chr2:242694776-242695031(+)$1	255	3	17	22.3389
::::::::::::::	chr1:33236754-33237030(+)$1	276	214	228	21.5762
:::::::::DDDDE	chr16:4658834-4659076(-)$1	242	7	21	19.7966
b55555eeeee]dd	chr12:7045311-7045590(+)$1	279	106	120	21.0677
HHHHHHHHJJJJJJ	chr17:7311412-7311683(+)$1	271	49	63	21.4067

#DB
(((...........	chr22:20937029-20937297(+)$1	1	23	37	22.2542
..............	chr19:36211769-36212012(+)$1	1	182	196	22.0847
..............	chr19:3574157-3574474(+)$1	1	123	137	23.9491
...))))))))...	chr22:38051587-38051878(+)$1	1	136	150	24.7118
.....(((..((((	chr17:7751102-7751358(+)$1	1	36	50	20.9830
...........((.	chr6:138752376-138752624(-)$1	1	56	70	22.0847
...........(((	chr2:242694520-242694828(+)$1	1	259	273	22.3389
..............	chr12:7046044-7046366(+)$1	1	145	159	20.6440
..............	chr12:7045611-7045869(+)$1	1	8	22	19.2033
))))))).......	chr8:145065547-145065774(+)$1	1	163	177	20.7288
(.............	chr19:2248368-2248634(+)$1	1	156	170	20.8135
..)))).....((.	chr19:15355130-15355407(-)$1	1	59	73	18.6949
........))))).	chr19:41255378-41255632(-)$1	1	80	94	21.8305
...........(((	chr3:12942671-12942964(-)$1	1	74	88	22.7627
..............	chr19:5231496-5231754(-)$1	1	66	80	30.0508
..............	chr20:2816670-2816938(-)$1	1	140	154	21.4915
..............	chr7:73011844-73012092(-)$1	1	211	225	20.2203
.((((((((..(((	chr12:57919476-57919716(+)$1	1	79	93	25.3050
.....(((((((((	chr11:10828728-10828969(-)$1	1	63	77	25.8983
..........))))	chr1:27736165-27736439(-)$1	1	118	132	25.3898
)).....(((.(..	chr3:47452428-47452701(+)$1	1	151	165	24.3728
))))......))).	chrX:129147781-129148014(+)$1	1	114	128	20.0508
))..(((.......	chr7:72412565-72412826(+)$1	1	50	64	21.9999
..............	chr7:73011732-73011971(-)$1	1	90	104	20.2203
..........))))	chr1:27736239-27736554(-)$1	1	233	247	25.3898
..............	chr17:42475035-42475330(-)$1	1	74	88	23.1016
(((((.........	chr6:33166980-33167258(-)$1	1	182	196	23.7796
(.............	chr16:30750211-30750445(+)$1	1	51	65	19.7966
(((...........	chr1:153604195-153604505(+)$1	1	233	247	23.7796
.....)).......	chr2:242756716-242756994(+)$1	1	199	213	23.3559
))........(((.	chr19:35632158-35632490(+)$1	1	89	103	21.0677
..........)).)	chr9:37486314-37486721(+)$1	1	45	59	21.0677
)))...))))....	chr19:14203501-14203721(-)$1	1	193	207	23.4406
))))).((((.(((	chr16:2577649-2577889(+)$1	1	28	42	21.3220
..............	chr19:3056242-3056500(-)$1	1	231	245	25.3898
((.((((..((.((	chr22:18301422-18301750(-)$1	1	75	89	19.6271
........(((((.	chr9:139849621-139849931(+)$1	1	36	50	20.2203
.((((((((((...	chr5:175957875-175958120(-)$1	1	205	219	23.2711
..............	chr17:7416336-7416647(+)$1	1	93	107	20.1355
...(((((......	chr5:140953097-140953428(-)$1	1	154	168	21.0677
))...))))))...	chr7:73011594-73011839(-)$1	1	208	222	23.8644
..............	chr2:204305801-204306064(-)$1	1	81	95	25.3898
(.............	chr19:6731418-6731668(-)$1	1	74	88	28.1016
((......(((((.	chr16:24942279-24942599(-)$1	1	0	14	20.1355
..............	chr3:47452252-47452522(+)$1	1	71	85	22.0847
(....)))......	chr19:16940357-16940707(+)$1	1	76	90	19.7118
(((.(((((.....	chr3:47459103-47459380(-)$1	1	8	22	20.1355
..............	chr5:175957824-175958052(-)$1	1	137	151	23.2711
.......)))))..	chr16:67267637-67267939(-)$1	1	80	94	22.7627
).............	chr16:30675503-30675810(+)$1	1	217	231	23.1864
..)))))..((((.	chr9:96021607-96021939(+)$1	1	34	48	19.6271
))))))...)))).	chr11:68029469-68029748(-)$1	1	134	148	19.7966
(((...........	chr19:36212046-36212399(+)$1	1	91	105	30.0508
)))...........	chr19:2248274-2248555(+)$1	1	250	264	20.8135
..............	chr2:242694776-242695031(+)$1	1	3	17	22.3389
..............	chr1:33236754-33237030(+)$1	1	214	228	21.5762
.........(((((	chr16:4658834-4659076(-)$1	1	7	21	19.7966
).....))))).))	chr12:7045311-7045590(+)$1	1	106	120	21.0677
((((((((((((((	chr17:7311412-7311683(+)$1	1	49	63	21.4067

#PSSM
C : 0.62	c : 0.22	G : 0.06	A : 0.05	U : 0.01	g : 0.01	
C : 0.74	c : 0.22	a : 0.01	A : 0.01	
C : 0.66	c : 0.22	A : 0.08	g : 0.01	U : 0.01	
C : 0.72	c : 0.22	U : 0.03	u : 0.01	
C : 0.61	c : 0.20	A : 0.06	U : 0.05	G : 0.05	a : 0.01	
U : 0.50	u : 0.13	A : 0.11	C : 0.08	G : 0.06	c : 0.03	g : 0.03	a : 0.01	
C : 0.69	c : 0.18	u : 0.03	U : 0.03	G : 0.03	A : 0.01	
C : 0.69	c : 0.18	G : 0.03	U : 0.03	A : 0.01	u : 0.01	a : 0.01	
C : 0.59	c : 0.18	U : 0.10	A : 0.05	G : 0.03	u : 0.03	
C : 0.67	c : 0.20	U : 0.10	a : 0.01	
A : 0.42	C : 0.20	U : 0.13	a : 0.11	c : 0.05	G : 0.03	g : 0.01	u : 0.01	
C : 0.55	c : 0.16	G : 0.13	A : 0.06	U : 0.03	g : 0.03	
C : 0.72	c : 0.20	A : 0.03	G : 0.03	
C : 0.71	c : 0.16	U : 0.06	a : 0.01	A : 0.01	u : 0.01	

#score	1319.0169491525419
#seq	59
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_transcript_m1_run1.nuc.txt

#NT
ggcggg	chr21:40720682-40720908(-)$1	226	203	209	17.9999
GGCGGG	chr8:145258097-145258386(+)$1	289	27	33	17.9999
ggcggg	chr21:33032116-33032411(+)$1	295	225	231	17.9999
GGCGGG	chr19:50180850-50181155(+)$1	305	40	46	17.9999
GGCGGG	chr16:1413573-1413869(-)$1	296	274	280	17.9999
ggcggg	chr7:100171281-100171577(-)$1	296	38	44	17.9999
GGCGGG	chr12:98987440-98987707(+)$1	267	104	110	17.9999
GGCGGG	chr4:56412255-56412546(-)$1	291	94	100	17.9999
ggcggg	chr2:48132372-48132641(-)$1	269	74	80	17.9999
GGCGGG	chr10:70091911-70092274(+)$1	363	194	200	17.9999
GGCGGG	chr19:2269674-2269927(+)$1	253	219	225	17.9999
GGCGGG	chr12:131356938-131357221(+)$1	283	80	86	17.9999
GGCGGG	chr7:5569385-5569640(-)$1	255	113	119	17.9999
GGCGGG	chr20:1165406-1165689(-)$1	283	121	127	17.9999
GGCGGG	chr10:977054-977350(-)$1	296	2	8	17.9999
GGCGGG	chr19:2269892-2270178(+)$1	286	1	7	17.9999
GGCGGG	chr1:228270379-228270709(+)$1	330	136	142	17.9999
ggcggg	chr12:57824298-57824672(-)$1	374	125	131	17.9999
GGCGGG	chr19:797875-798136(+)$1	261	139	145	17.9999
GGCGGG	chr2:61764251-61764529(-)$1	278	26	32	17.9999
GGCGGG	chr7:143078836-143079093(+)$1	257	42	48	17.9999
GGCGGG	chr5:138629672-138630031(+)$1	359	94	100	17.9999
GGCGGG	chr1:245026246-245026527(-)$1	281	15	21	17.9999
GGCGGG	chr22:50032813-50033091(-)$1	278	32	38	17.9999
GGCGGG	chr12:76477637-76477890(-)$1	253	72	78	17.9999
ggcggg	chr7:150645349-150645602(-)$1	253	75	81	17.9999
GGCGGG	chr7:99755806-99756075(-)$1	269	217	223	17.9999
GGCGGG	chr7:5569348-5569585(-)$1	237	58	64	17.9999
GGCGGG	chr16:88850506-88850769(-)$1	263	100	106	17.9999
GGCGGG	chr7:77166712-77166972(+)$1	260	32	38	17.9999
GGCGGG	chr16:15234781-15235066(-)$1	285	57	63	17.9999
GGCGGG	chr11:65624898-65625164(-)$1	266	106	112	17.9999
GGCGGG	chrX:47053358-47053704(+)$1	346	150	156	17.9999
GGCGGG	chr2:178128899-178129218(-)$1	319	3	9	17.9999
GGCGGG	chr10:88853738-88853989(-)$1	251	218	224	17.9999
ggcggg	chr7:148580597-148580851(-)$1	254	124	130	17.9999
GGCGGG	chr4:1341005-1341265(+)$1	260	39	45	17.9999
GGCGGG	chr11:64545093-64545355(-)$1	262	97	103	17.9999
GGCGGG	chr11:62368676-62368991(-)$1	315	56	62	17.9999
ggcggg	chr18:9137195-9137486(+)$1	291	86	92	17.9999
GGCGGG	chr12:109124829-109125161(-)$1	332	0	6	17.9999
GGCGGG	chr4:1804105-1804357(+)$1	252	196	202	17.9999
ggcggg	chr1:245026391-245026640(-)$1	249	21	27	17.9999
ggcggg	chr6:109703063-109703334(-)$1	271	26	32	17.9999
GGCGGG	chr9:74979417-74979671(-)$1	254	113	119	17.9999
GGCGGG	chr19:4052507-4052792(-)$1	285	88	94	17.9999
GGCGGG	chr17:17723230-17723495(-)$1	265	107	113	17.9999
GGCGGG	chr7:148580946-148581222(-)$1	276	225	231	17.9999
ggcggg	chr17:80230606-80230864(-)$1	258	49	55	17.9999
ggcggg	chr10:5932341-5932698(+)$1	357	160	166	17.9999
GGCGGG	chr7:129252058-129252390(+)$1	332	11	17	17.9999
ggcggg	chr1:27928554-27928859(-)$1	305	20	26	17.9999
GGCGGG	chr15:38545037-38545374(+)$1	337	108	114	17.9999
ggcggg	chr14:105261489-105261791(-)$1	302	117	123	17.9999
GGCGGG	chr6:64282663-64283016(+)$1	353	101	107	17.9999
ggcggg	chr3:176914160-176914414(-)$1	254	121	127	17.9999
GGCGGG	chr17:79876234-79876512(-)$1	278	165	171	17.9999
GGCGGG	chr19:810556-810788(+)$1	232	74	80	17.9999
ggcggg	chr5:177632137-177632386(+)$1	249	174	180	17.9999
ggcggg	chr7:105924871-105925168(-)$1	297	120	126	17.9999
ggcggg	chr17:46985943-46986202(+)$1	259	24	30	17.9999
GGCGGG	chr8:96146460-96146738(+)$1	278	125	131	17.9999

#otherMatches

#Struct PSSM
HHH:::	chr17:27139251-27139644(-)$1	393	152	158	17.9999
}FFFFF	chr21:40720682-40720908(-)$1	226	203	209	17.9999
oeeeee	chr8:145258097-145258386(+)$1	289	27	33	17.9999
dddCCC	chr21:33032116-33032411(+)$1	295	225	231	17.9999
dddEEE	chr19:50180850-50181155(+)$1	305	40	46	17.9999
III}A}	chr16:1413573-1413869(-)$1	296	274	280	17.9999
fff[aa	chr7:100171281-100171577(-)$1	296	38	44	17.9999
eeeee[	chr12:98987440-98987707(+)$1	267	104	110	17.9999
JJJJJJ	chr4:56412255-56412546(-)$1	291	94	100	17.9999
cc]===	chr2:48132372-48132641(-)$1	269	74	80	17.9999
bbeeee	chr10:70091911-70092274(+)$1	363	194	200	17.9999
CCC}CC	chr19:2269674-2269927(+)$1	253	219	225	17.9999
dddnnn	chr12:131356938-131357221(+)$1	283	80	86	17.9999
ccclll	chr7:5569385-5569640(-)$1	255	113	119	17.9999
]eeeee	chr20:1165406-1165689(-)$1	283	121	127	17.9999
DDD{HH	chr10:977054-977350(-)$1	296	2	8	17.9999
::::a[	chr19:2269892-2270178(+)$1	286	1	7	17.9999
:ggggg	chr1:228270379-228270709(+)$1	330	136	142	17.9999
fff]ee	chr12:57824298-57824672(-)$1	374	125	131	17.9999
bb[eee	chr19:797875-798136(+)$1	261	139	145	17.9999
eeeeei	chr2:61764251-61764529(-)$1	278	26	32	17.9999
DD{JJJ	chr7:143078836-143079093(+)$1	257	42	48	17.9999
=[ffff	chr5:138629672-138630031(+)$1	359	94	100	17.9999
HHHddd	chr1:245026246-245026527(-)$1	281	15	21	17.9999
ddd[gg	chr22:50032813-50033091(-)$1	278	32	38	17.9999
iiiiii	chr12:76477637-76477890(-)$1	253	72	78	17.9999
bb[acc	chr7:150645349-150645602(-)$1	253	75	81	17.9999
eeeee2	chr7:99755806-99756075(-)$1	269	217	223	17.9999
ccclll	chr7:5569348-5569585(-)$1	237	58	64	17.9999
gg22hh	chr16:88850506-88850769(-)$1	263	100	106	17.9999
H{AFFF	chr7:77166712-77166972(+)$1	260	32	38	17.9999
JJJJJJ	chr16:15234781-15235066(-)$1	285	57	63	17.9999
ddd22a	chr11:65624898-65625164(-)$1	266	106	112	17.9999
iiiiii	chrX:47053358-47053704(+)$1	346	150	156	17.9999
FFFiii	chr2:178128899-178129218(-)$1	319	3	9	17.9999
fffffl	chr10:88853738-88853989(-)$1	251	218	224	17.9999
mmmmff	chr7:148580597-148580851(-)$1	254	124	130	17.9999
JJJJJJ	chr4:1341005-1341265(+)$1	260	39	45	17.9999
JJJJJc	chr11:64545093-64545355(-)$1	262	97	103	17.9999
]ccc]c	chr11:62368676-62368991(-)$1	315	56	62	17.9999
]bb]a]	chr18:9137195-9137486(+)$1	291	86	92	17.9999
:::FFF	chr12:109124829-109125161(-)$1	332	0	6	17.9999
IIIIII	chr4:1804105-1804357(+)$1	252	196	202	17.9999
Afffff	chr1:245026391-245026640(-)$1	249	21	27	17.9999
dddddd	chr6:109703063-109703334(-)$1	271	26	32	17.9999
gggggg	chr9:74979417-74979671(-)$1	254	113	119	17.9999
JJJJJJ	chr19:4052507-4052792(-)$1	285	88	94	17.9999
ee]ccc	chr17:17723230-17723495(-)$1	265	107	113	17.9999
22a]ee	chr7:148580946-148581222(-)$1	276	225	231	17.9999
fffff[	chr17:80230606-80230864(-)$1	258	49	55	17.9999
22gggg	chr10:5932341-5932698(+)$1	357	160	166	17.9999
A{A:dd	chr7:129252058-129252390(+)$1	332	11	17	17.9999
cc[bb[	chr1:27928554-27928859(-)$1	305	20	26	17.9999
JJJJJJ	chr15:38545037-38545374(+)$1	337	108	114	17.9999
3=====	chr14:105261489-105261791(-)$1	302	117	123	17.9999
dddqqq	chr6:64282663-64283016(+)$1	353	101	107	17.9999
=]iiii	chr3:176914160-176914414(-)$1	254	121	127	17.9999
ddd22b	chr17:79876234-79876512(-)$1	278	165	171	17.9999
ccc[ff	chr19:810556-810788(+)$1	232	74	80	17.9999
gggggb	chr5:177632137-177632386(+)$1	249	174	180	17.9999
A{A{FF	chr7:105924871-105925168(-)$1	297	120	126	17.9999
fffqqq	chr17:46985943-46986202(+)$1	259	24	30	17.9999
iiiii]	chr8:96146460-96146738(+)$1	278	125	131	17.9999

#DB
(((...	chr17:27139251-27139644(-)$1	1	152	158	17.9999
.)))))	chr21:40720682-40720908(-)$1	1	203	209	17.9999
.)))))	chr8:145258097-145258386(+)$1	1	27	33	17.9999
))))))	chr21:33032116-33032411(+)$1	1	225	231	17.9999
)))(((	chr19:50180850-50181155(+)$1	1	40	46	17.9999
))).).	chr16:1413573-1413869(-)$1	1	274	280	17.9999
(((.((	chr7:100171281-100171577(-)$1	1	38	44	17.9999
(((((.	chr12:98987440-98987707(+)$1	1	104	110	17.9999
((((((	chr4:56412255-56412546(-)$1	1	94	100	17.9999
)).)))	chr2:48132372-48132641(-)$1	1	74	80	17.9999
((((((	chr10:70091911-70092274(+)$1	1	194	200	17.9999
))).))	chr19:2269674-2269927(+)$1	1	219	225	17.9999
(((...	chr12:131356938-131357221(+)$1	1	80	86	17.9999
(((...	chr7:5569385-5569640(-)$1	1	113	119	17.9999
.)))))	chr20:1165406-1165689(-)$1	1	121	127	17.9999
(((.((	chr10:977054-977350(-)$1	1	2	8	17.9999
....(.	chr19:2269892-2270178(+)$1	1	1	7	17.9999
.(((((	chr1:228270379-228270709(+)$1	1	136	142	17.9999
))).))	chr12:57824298-57824672(-)$1	1	125	131	17.9999
((.(((	chr19:797875-798136(+)$1	1	139	145	17.9999
))))))	chr2:61764251-61764529(-)$1	1	26	32	17.9999
((.(((	chr7:143078836-143079093(+)$1	1	42	48	17.9999
(.((((	chr5:138629672-138630031(+)$1	1	94	100	17.9999
((((((	chr1:245026246-245026527(-)$1	1	15	21	17.9999
(((.((	chr22:50032813-50033091(-)$1	1	32	38	17.9999
((((((	chr12:76477637-76477890(-)$1	1	72	78	17.9999
((.(((	chr7:150645349-150645602(-)$1	1	75	81	17.9999
))))).	chr7:99755806-99756075(-)$1	1	217	223	17.9999
(((...	chr7:5569348-5569585(-)$1	1	58	64	17.9999
))..))	chr16:88850506-88850769(-)$1	1	100	106	17.9999
(.((((	chr7:77166712-77166972(+)$1	1	32	38	17.9999
((((((	chr16:15234781-15235066(-)$1	1	57	63	17.9999
)))..)	chr11:65624898-65625164(-)$1	1	106	112	17.9999
))))))	chrX:47053358-47053704(+)$1	1	150	156	17.9999
((((((	chr2:178128899-178129218(-)$1	1	3	9	17.9999
(((((.	chr10:88853738-88853989(-)$1	1	218	224	17.9999
....))	chr7:148580597-148580851(-)$1	1	124	130	17.9999
((((((	chr4:1341005-1341265(+)$1	1	39	45	17.9999
((((((	chr11:64545093-64545355(-)$1	1	97	103	17.9999
.))).)	chr11:62368676-62368991(-)$1	1	56	62	17.9999
.)).).	chr18:9137195-9137486(+)$1	1	86	92	17.9999
...(((	chr12:109124829-109125161(-)$1	1	0	6	17.9999
))))))	chr4:1804105-1804357(+)$1	1	196	202	17.9999
((((((	chr1:245026391-245026640(-)$1	1	21	27	17.9999
((((((	chr6:109703063-109703334(-)$1	1	26	32	17.9999
((((((	chr9:74979417-74979671(-)$1	1	113	119	17.9999
((((((	chr19:4052507-4052792(-)$1	1	88	94	17.9999
)).)))	chr17:17723230-17723495(-)$1	1	107	113	17.9999
..).))	chr7:148580946-148581222(-)$1	1	225	231	17.9999
(((((.	chr17:80230606-80230864(-)$1	1	49	55	17.9999
..))))	chr10:5932341-5932698(+)$1	1	160	166	17.9999
(.(.((	chr7:129252058-129252390(+)$1	1	11	17	17.9999
((.((.	chr1:27928554-27928859(-)$1	1	20	26	17.9999
((((((	chr15:38545037-38545374(+)$1	1	108	114	17.9999
.)))))	chr14:105261489-105261791(-)$1	1	117	123	17.9999
(((...	chr6:64282663-64283016(+)$1	1	101	107	17.9999
).))))	chr3:176914160-176914414(-)$1	1	121	127	17.9999
)))..)	chr17:79876234-79876512(-)$1	1	165	171	17.9999
(((.((	chr19:810556-810788(+)$1	1	74	80	17.9999
))))))	chr5:177632137-177632386(+)$1	1	174	180	17.9999
(.(.((	chr7:105924871-105925168(-)$1	1	120	126	17.9999
(((...	chr17:46985943-46986202(+)$1	1	24	30	17.9999
))))).	chr8:96146460-96146738(+)$1	1	125	131	17.9999

#PSSM
G : 0.71	g : 0.28	
G : 0.71	g : 0.28	
C : 0.71	c : 0.28	
G : 0.71	g : 0.28	
G : 0.71	g : 0.28	
G : 0.71	g : 0.28	

#score	1133.9999999999998
#seq	63
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_CDS_m3_run2.nuc.txt

#NT
GAA	chr20:2448165-2448399(-)$1	234	105	108	8.9999
GAA	chr6:26204910-26205142(+)$1	232	138	141	8.9999
GAA	chr6:35438300-35438523(+)$1	223	88	91	8.9999
GAA	chr1:220320832-220321101(+)$1	269	16	19	8.9999
GAA	chr18:43667984-43668270(-)$1	286	16	19	8.9999
GAA	chr6:133138077-133138297(+)$1	220	35	38	8.9999
GAA	chr11:77330550-77330784(-)$1	234	0	3	8.9999
GAA	chr11:32616372-32616615(+)$1	243	35	38	8.9999
GAA	chr6:27805968-27806210(-)$1	242	65	68	8.9999
GAA	chrX:153627800-153628035(+)$1	235	58	61	8.9999
GAA	chr17:56082290-56082562(-)$1	272	76	79	8.9999
GAA	chr17:80899203-80899460(+)$1	257	207	210	8.9999
gaa	chr10:102286696-102286932(-)$1	236	48	51	8.9999
GAA	chr20:35240452-35240752(+)$1	300	63	66	8.9999
GAA	chr5:149826297-149826576(-)$1	279	20	23	8.9999
GAA	chr21:35279566-35279814(-)$1	248	4	7	8.9999
GAA	chr8:99054834-99055104(-)$1	270	30	33	8.9999
GAA	chr16:85838483-85838742(+)$1	259	58	61	8.9999
GAA	chr12:57037527-57037763(-)$1	236	58	61	8.9999
GAA	chr3:101405293-101405501(-)$1	208	30	33	8.9999
GAA	chr2:15770095-15770335(+)$1	240	33	36	8.9999
GAA	chr11:20398029-20398287(+)$1	258	50	53	8.9999
GAA	chr17:37006514-37006721(-)$1	207	20	23	8.9999
GAA	chr8:125561980-125562236(+)$1	256	39	42	8.9999
GAA	chr1:109954436-109954658(-)$1	222	23	26	8.9999
GAA	chr2:62095725-62095937(-)$1	212	71	74	8.9999
GAA	chr17:38153988-38154229(+)$1	241	106	109	8.9999
GAA	chr12:98989418-98989667(+)$1	249	1	4	8.9999
GAA	chr9:139565282-139565563(+)$1	281	135	138	8.9999
GAA	chr8:99057106-99057327(-)$1	221	10	13	8.9999
GAA	chr19:59060597-59060837(+)$1	240	26	29	8.9999
GAA	chr9:75784895-75785266(+)$1	371	22	25	8.9999
GAA	chr6:133138538-133138746(+)$1	208	28	31	8.9999
GAA	chrX:71493550-71493770(-)$1	220	55	58	8.9999
GAA	chr14:65392625-65392876(+)$1	251	28	31	8.9999
GAA	chr6:35438020-35438228(+)$1	208	19	22	8.9999
GAA	chr6:75947530-75947787(-)$1	257	9	12	8.9999
GAA	chr2:55460449-55460653(+)$1	204	100	103	8.9999
GAA	chr11:18425145-18425392(+)$1	247	10	13	8.9999
GAA	chr11:32608579-32608791(+)$1	212	1	4	8.9999
GAA	chr2:17846568-17846869(-)$1	301	15	18	8.9999
GAA	chrX:151869898-151870168(+)$1	270	68	71	8.9999
GAA	chr1:24021085-24021323(+)$1	238	23	26	8.9999
GAA	chr17:7476049-7476285(+)$1	236	137	140	8.9999
GAA	chr3:186506905-186507151(+)$1	246	7	10	8.9999
GAA	chr3:49397569-49397809(-)$1	240	2	5	8.9999
GAA	chr1:32691945-32692190(+)$1	245	77	80	8.9999
GAA	chr1:109955588-109955822(-)$1	234	11	14	8.9999
GAA	chr1:109964381-109964649(-)$1	268	32	35	8.9999
GAA	chr9:134003743-134003970(+)$1	227	6	9	8.9999
GAA	chr12:21791270-21791485(-)$1	215	0	3	8.9999
GAA	chr11:5290583-5290805(-)$1	222	4	7	8.9999
GAA	chr7:54819991-54820212(-)$1	221	71	74	8.9999
GAA	chr12:56666730-56666986(-)$1	256	56	59	8.9999
GAA	chr10:102289035-102289284(-)$1	249	71	74	8.9999
GAA	chr6:160200842-160201126(-)$1	284	1	4	8.9999
GAA	chr18:43669799-43670058(-)$1	259	107	110	8.9999
GAA	chr11:70282397-70282665(+)$1	268	68	71	8.9999
GAA	chr17:6546211-6546535(+)$1	324	24	27	8.9999
GAA	chr17:36909302-36909548(+)$1	246	4	7	8.9999
GAA	chr9:36190910-36191158(+)$1	248	202	205	8.9999
GAA	chr17:7481079-7481304(+)$1	225	1	4	8.9999
GAA	chr12:56553309-56553586(+)$1	277	51	54	8.9999
GAA	chr12:54677499-54677720(+)$1	221	37	40	8.9999
GAA	chr8:41555490-41555740(-)$1	250	7	10	8.9999
GAA	chr14:50052934-50053185(-)$1	251	62	65	8.9999
GAA	chr6:31698545-31698781(-)$1	236	12	15	8.9999
GAA	chr3:40500034-40500258(+)$1	224	12	15	8.9999
GAA	chr19:58904243-58904455(+)$1	212	7	10	8.9999
GAA	chr8:99057070-99057306(-)$1	236	34	37	8.9999
GAA	chr15:55488919-55489211(-)$1	292	0	3	8.9999
GAA	chr11:75113323-75113541(+)$1	218	26	29	8.9999
GAA	chr17:41151991-41152216(+)$1	225	10	13	8.9999
GAA	chr5:81572232-81572437(-)$1	205	1	4	8.9999
GAA	chr2:198353625-198353860(-)$1	235	21	24	8.9999
GAA	chr1:182354391-182354621(-)$1	230	14	17	8.9999
GAA	chr12:54677564-54677769(+)$1	205	31	34	8.9999
GAA	chr1:28527232-28527483(-)$1	251	24	27	8.9999
GAA	chr6:74228016-74228251(-)$1	235	7	10	8.9999
GAA	chr9:37436672-37436961(+)$1	289	18	21	8.9999
GAA	chr4:39456383-39456606(-)$1	223	70	73	8.9999
GAA	chr12:56553989-56554205(+)$1	216	41	44	8.9999
GAA	chr15:64380801-64381063(-)$1	262	22	25	8.9999
GAA	chr1:115273068-115273337(-)$1	269	12	15	8.9999
GAA	chr7:42962823-42963087(-)$1	264	46	49	8.9999
GAA	chr11:75113298-75113507(+)$1	209	5	8	8.9999
GAA	chr11:75114963-75115177(+)$1	214	10	13	8.9999
GAA	chr2:55460421-55460649(+)$1	228	98	101	8.9999
GAA	chr15:66794117-66794343(-)$1	226	107	110	8.9999
GAA	chr5:81573412-81573624(-)$1	212	8	11	8.9999
GAA	chr2:27994497-27994767(+)$1	270	65	68	8.9999
GAA	chr4:57314780-57315049(+)$1	269	21	24	8.9999
GAA	chr16:28854100-28854412(-)$1	312	8	11	8.9999
GAA	chr22:31795500-31795774(+)$1	274	46	49	8.9999
GAA	chr3:183896564-183896844(+)$1	280	83	86	8.9999
GAA	chr8:56986177-56986430(-)$1	253	37	40	8.9999

#otherMatches

#Struct PSSM
qqa	chr12:131357455-131357684(+)$1	229	20	23	8.9999
!!h	chr20:2448165-2448399(-)$1	234	105	108	8.9999
:::	chr6:26204910-26205142(+)$1	232	138	141	8.9999
mmm	chr6:35438300-35438523(+)$1	223	88	91	8.9999
MMM	chr1:220320832-220321101(+)$1	269	16	19	8.9999
fff	chr18:43667984-43668270(-)$1	286	16	19	8.9999
:::	chr6:133138077-133138297(+)$1	220	35	38	8.9999
FFF	chr11:77330550-77330784(-)$1	234	0	3	8.9999
c!!	chr11:32616372-32616615(+)$1	243	35	38	8.9999
qqq	chr6:27805968-27806210(-)$1	242	65	68	8.9999
+++	chrX:153627800-153628035(+)$1	235	58	61	8.9999
hhh	chr17:56082290-56082562(-)$1	272	76	79	8.9999
hhm	chr17:80899203-80899460(+)$1	257	207	210	8.9999
eee	chr10:102286696-102286932(-)$1	236	48	51	8.9999
KKG	chr20:35240452-35240752(+)$1	300	63	66	8.9999
gg:	chr5:149826297-149826576(-)$1	279	20	23	8.9999
eee	chr21:35279566-35279814(-)$1	248	4	7	8.9999
III	chr8:99054834-99055104(-)$1	270	30	33	8.9999
[bb	chr16:85838483-85838742(+)$1	259	58	61	8.9999
dd:	chr12:57037527-57037763(-)$1	236	58	61	8.9999
eee	chr3:101405293-101405501(-)$1	208	30	33	8.9999
e::	chr2:15770095-15770335(+)$1	240	33	36	8.9999
bb2	chr11:20398029-20398287(+)$1	258	50	53	8.9999
ddd	chr17:37006514-37006721(-)$1	207	20	23	8.9999
ee!	chr8:125561980-125562236(+)$1	256	39	42	8.9999
a00	chr1:109954436-109954658(-)$1	222	23	26	8.9999
hhh	chr2:62095725-62095937(-)$1	212	71	74	8.9999
""b	chr17:38153988-38154229(+)$1	241	106	109	8.9999
{FF	chr12:98989418-98989667(+)$1	249	1	4	8.9999
:::	chr9:139565282-139565563(+)$1	281	135	138	8.9999
ooo	chr8:99057106-99057327(-)$1	221	10	13	8.9999
c:g	chr19:59060597-59060837(+)$1	240	26	29	8.9999
AKK	chr9:75784895-75785266(+)$1	371	22	25	8.9999
e::	chr6:133138538-133138746(+)$1	208	28	31	8.9999
fff	chrX:71493550-71493770(-)$1	220	55	58	8.9999
HHK	chr14:65392625-65392876(+)$1	251	28	31	8.9999
f[c	chr6:35438020-35438228(+)$1	208	19	22	8.9999
::E	chr6:75947530-75947787(-)$1	257	9	12	8.9999
c[d	chr2:55460449-55460653(+)$1	204	100	103	8.9999
eee	chr11:18425145-18425392(+)$1	247	10	13	8.9999
ddd	chr11:32608579-32608791(+)$1	212	1	4	8.9999
:::	chr2:17846568-17846869(-)$1	301	15	18	8.9999
bb2	chrX:151869898-151870168(+)$1	270	68	71	8.9999
WWW	chr1:24021085-24021323(+)$1	238	23	26	8.9999
gg[	chr17:7476049-7476285(+)$1	236	137	140	8.9999
hhh	chr3:186506905-186507151(+)$1	246	7	10	8.9999
:::	chr3:49397569-49397809(-)$1	240	2	5	8.9999
acc	chr1:32691945-32692190(+)$1	245	77	80	8.9999
%%%	chr1:109955588-109955822(-)$1	234	11	14	8.9999
c[c	chr1:109964381-109964649(-)$1	268	32	35	8.9999
HHH	chr9:134003743-134003970(+)$1	227	6	9	8.9999
:::	chr12:21791270-21791485(-)$1	215	0	3	8.9999
:::	chr11:5290583-5290805(-)$1	222	4	7	8.9999
fff	chr7:54819991-54820212(-)$1	221	71	74	8.9999
f##	chr12:56666730-56666986(-)$1	256	56	59	8.9999
ddg	chr10:102289035-102289284(-)$1	249	71	74	8.9999
::D	chr6:160200842-160201126(-)$1	284	1	4	8.9999
!!c	chr18:43669799-43670058(-)$1	259	107	110	8.9999
]a]	chr11:70282397-70282665(+)$1	268	68	71	8.9999
iii	chr17:6546211-6546535(+)$1	324	24	27	8.9999
{AD	chr17:36909302-36909548(+)$1	246	4	7	8.9999
BBY	chr9:36190910-36191158(+)$1	248	202	205	8.9999
:::	chr17:7481079-7481304(+)$1	225	1	4	8.9999
""g	chr12:56553309-56553586(+)$1	277	51	54	8.9999
fff	chr12:54677499-54677720(+)$1	221	37	40	8.9999
DDD	chr8:41555490-41555740(-)$1	250	7	10	8.9999
fff	chr14:50052934-50053185(-)$1	251	62	65	8.9999
CCC	chr6:31698545-31698781(-)$1	236	12	15	8.9999
eee	chr3:40500034-40500258(+)$1	224	12	15	8.9999
KFF	chr19:58904243-58904455(+)$1	212	7	10	8.9999
EEE	chr8:99057070-99057306(-)$1	236	34	37	8.9999
:::	chr15:55488919-55489211(-)$1	292	0	3	8.9999
===	chr11:75113323-75113541(+)$1	218	26	29	8.9999
!!c	chr17:41151991-41152216(+)$1	225	10	13	8.9999
:::	chr5:81572232-81572437(-)$1	205	1	4	8.9999
cc#	chr2:198353625-198353860(-)$1	235	21	24	8.9999
eee	chr1:182354391-182354621(-)$1	230	14	17	8.9999
F{A	chr12:54677564-54677769(+)$1	205	31	34	8.9999
ffd	chr1:28527232-28527483(-)$1	251	24	27	8.9999
eep	chr6:74228016-74228251(-)$1	235	7	10	8.9999
:::	chr9:37436672-37436961(+)$1	289	18	21	8.9999
cc4	chr4:39456383-39456606(-)$1	223	70	73	8.9999
nnn	chr12:56553989-56554205(+)$1	216	41	44	8.9999
[dd	chr15:64380801-64381063(-)$1	262	22	25	8.9999
GGG	chr1:115273068-115273337(-)$1	269	12	15	8.9999
ggg	chr7:42962823-42963087(-)$1	264	46	49	8.9999
MMM	chr11:75113298-75113507(+)$1	209	5	8	8.9999
fff	chr11:75114963-75115177(+)$1	214	10	13	8.9999
WWW	chr2:55460421-55460649(+)$1	228	98	101	8.9999
iii	chr15:66794117-66794343(-)$1	226	107	110	8.9999
:::	chr5:81573412-81573624(-)$1	212	8	11	8.9999
LLL	chr2:27994497-27994767(+)$1	270	65	68	8.9999
hhh	chr4:57314780-57315049(+)$1	269	21	24	8.9999
DD:	chr16:28854100-28854412(-)$1	312	8	11	8.9999
f''	chr22:31795500-31795774(+)$1	274	46	49	8.9999
CC{	chr3:183896564-183896844(+)$1	280	83	86	8.9999
eee	chr8:56986177-56986430(-)$1	253	37	40	8.9999

#DB
..)	chr12:131357455-131357684(+)$1	1	20	23	8.9999
..(	chr20:2448165-2448399(-)$1	1	105	108	8.9999
...	chr6:26204910-26205142(+)$1	1	138	141	8.9999
...	chr6:35438300-35438523(+)$1	1	88	91	8.9999
...	chr1:220320832-220321101(+)$1	1	16	19	8.9999
(((	chr18:43667984-43668270(-)$1	1	16	19	8.9999
...	chr6:133138077-133138297(+)$1	1	35	38	8.9999
(((	chr11:77330550-77330784(-)$1	1	0	3	8.9999
(..	chr11:32616372-32616615(+)$1	1	35	38	8.9999
...	chr6:27805968-27806210(-)$1	1	65	68	8.9999
...	chrX:153627800-153628035(+)$1	1	58	61	8.9999
)))	chr17:56082290-56082562(-)$1	1	76	79	8.9999
((.	chr17:80899203-80899460(+)$1	1	207	210	8.9999
(((	chr10:102286696-102286932(-)$1	1	48	51	8.9999
..(	chr20:35240452-35240752(+)$1	1	63	66	8.9999
)).	chr5:149826297-149826576(-)$1	1	20	23	8.9999
(((	chr21:35279566-35279814(-)$1	1	4	7	8.9999
(((	chr8:99054834-99055104(-)$1	1	30	33	8.9999
.((	chr16:85838483-85838742(+)$1	1	58	61	8.9999
)).	chr12:57037527-57037763(-)$1	1	58	61	8.9999
)))	chr3:101405293-101405501(-)$1	1	30	33	8.9999
)..	chr2:15770095-15770335(+)$1	1	33	36	8.9999
)).	chr11:20398029-20398287(+)$1	1	50	53	8.9999
)))	chr17:37006514-37006721(-)$1	1	20	23	8.9999
((.	chr8:125561980-125562236(+)$1	1	39	42	8.9999
)..	chr1:109954436-109954658(-)$1	1	23	26	8.9999
)))	chr2:62095725-62095937(-)$1	1	71	74	8.9999
..(	chr17:38153988-38154229(+)$1	1	106	109	8.9999
.((	chr12:98989418-98989667(+)$1	1	1	4	8.9999
...	chr9:139565282-139565563(+)$1	1	135	138	8.9999
...	chr8:99057106-99057327(-)$1	1	10	13	8.9999
).(	chr19:59060597-59060837(+)$1	1	26	29	8.9999
(..	chr9:75784895-75785266(+)$1	1	22	25	8.9999
)..	chr6:133138538-133138746(+)$1	1	28	31	8.9999
(((	chrX:71493550-71493770(-)$1	1	55	58	8.9999
((.	chr14:65392625-65392876(+)$1	1	28	31	8.9999
(.(	chr6:35438020-35438228(+)$1	1	19	22	8.9999
..(	chr6:75947530-75947787(-)$1	1	9	12	8.9999
(.(	chr2:55460449-55460653(+)$1	1	100	103	8.9999
)))	chr11:18425145-18425392(+)$1	1	10	13	8.9999
(((	chr11:32608579-32608791(+)$1	1	1	4	8.9999
...	chr2:17846568-17846869(-)$1	1	15	18	8.9999
)).	chrX:151869898-151870168(+)$1	1	68	71	8.9999
...	chr1:24021085-24021323(+)$1	1	23	26	8.9999
((.	chr17:7476049-7476285(+)$1	1	137	140	8.9999
(((	chr3:186506905-186507151(+)$1	1	7	10	8.9999
...	chr3:49397569-49397809(-)$1	1	2	5	8.9999
(((	chr1:32691945-32692190(+)$1	1	77	80	8.9999
...	chr1:109955588-109955822(-)$1	1	11	14	8.9999
(.(	chr1:109964381-109964649(-)$1	1	32	35	8.9999
(((	chr9:134003743-134003970(+)$1	1	6	9	8.9999
...	chr12:21791270-21791485(-)$1	1	0	3	8.9999
...	chr11:5290583-5290805(-)$1	1	4	7	8.9999
(((	chr7:54819991-54820212(-)$1	1	71	74	8.9999
(..	chr12:56666730-56666986(-)$1	1	56	59	8.9999
)))	chr10:102289035-102289284(-)$1	1	71	74	8.9999
..(	chr6:160200842-160201126(-)$1	1	1	4	8.9999
..(	chr18:43669799-43670058(-)$1	1	107	110	8.9999
.).	chr11:70282397-70282665(+)$1	1	68	71	8.9999
(((	chr17:6546211-6546535(+)$1	1	24	27	8.9999
.((	chr17:36909302-36909548(+)$1	1	4	7	8.9999
)).	chr9:36190910-36191158(+)$1	1	202	205	8.9999
...	chr17:7481079-7481304(+)$1	1	1	4	8.9999
..(	chr12:56553309-56553586(+)$1	1	51	54	8.9999
)))	chr12:54677499-54677720(+)$1	1	37	40	8.9999
(((	chr8:41555490-41555740(-)$1	1	7	10	8.9999
(((	chr14:50052934-50053185(-)$1	1	62	65	8.9999
(((	chr6:31698545-31698781(-)$1	1	12	15	8.9999
(((	chr3:40500034-40500258(+)$1	1	12	15	8.9999
.((	chr19:58904243-58904455(+)$1	1	7	10	8.9999
(((	chr8:99057070-99057306(-)$1	1	34	37	8.9999
...	chr15:55488919-55489211(-)$1	1	0	3	8.9999
)))	chr11:75113323-75113541(+)$1	1	26	29	8.9999
..(	chr17:41151991-41152216(+)$1	1	10	13	8.9999
...	chr5:81572232-81572437(-)$1	1	1	4	8.9999
((.	chr2:198353625-198353860(-)$1	1	21	24	8.9999
(((	chr1:182354391-182354621(-)$1	1	14	17	8.9999
(.(	chr12:54677564-54677769(+)$1	1	31	34	8.9999
))(	chr1:28527232-28527483(-)$1	1	24	27	8.9999
((.	chr6:74228016-74228251(-)$1	1	7	10	8.9999
...	chr9:37436672-37436961(+)$1	1	18	21	8.9999
)).	chr4:39456383-39456606(-)$1	1	70	73	8.9999
...	chr12:56553989-56554205(+)$1	1	41	44	8.9999
.((	chr15:64380801-64381063(-)$1	1	22	25	8.9999
(((	chr1:115273068-115273337(-)$1	1	12	15	8.9999
(((	chr7:42962823-42963087(-)$1	1	46	49	8.9999
...	chr11:75113298-75113507(+)$1	1	5	8	8.9999
(((	chr11:75114963-75115177(+)$1	1	10	13	8.9999
...	chr2:55460421-55460649(+)$1	1	98	101	8.9999
(((	chr15:66794117-66794343(-)$1	1	107	110	8.9999
...	chr5:81573412-81573624(-)$1	1	8	11	8.9999
...	chr2:27994497-27994767(+)$1	1	65	68	8.9999
(((	chr4:57314780-57315049(+)$1	1	21	24	8.9999
((.	chr16:28854100-28854412(-)$1	1	8	11	8.9999
(..	chr22:31795500-31795774(+)$1	1	46	49	8.9999
((.	chr3:183896564-183896844(+)$1	1	83	86	8.9999
)))	chr8:56986177-56986430(-)$1	1	37	40	8.9999

#PSSM
G : 0.98	g : 0.01	
A : 0.98	a : 0.01	
A : 0.98	a : 0.01	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_CDS_m3_run1.nuc.txt

#NT
uuuucu	chr18:12986735-12986996(+)$1	261	1	7	16.0681
UUUUCU	chr3:171851284-171851547(+)$1	263	90	96	16.0681
UUUUCU	chr2:160253480-160253821(-)$1	341	50	56	16.0681
UUUUCU	chr4:68376610-68376964(-)$1	354	208	214	16.0681
UUUUCU	chr7:148514170-148514435(-)$1	265	249	255	16.0681
UUUUCU	chr6:91254237-91254529(-)$1	292	15	21	16.0681
UUUUGU	chr3:33438218-33438479(-)$1	261	91	97	14.0227
UUUUUU	chr3:169888898-169889231(-)$1	333	85	91	13.9090
UUUUUU	chr2:97297103-97297386(-)$1	283	91	97	13.9090
UUUUCU	chr15:62160025-62160316(-)$1	291	39	45	16.0681
uuuugu	chr1:204501766-204502064(+)$1	298	7	13	14.0227
UUUUCU	chr3:179092840-179093117(+)$1	277	50	56	16.0681
UUUUCU	chr12:11285968-11286254(-)$1	286	277	283	16.0681
UUUUUU	chr17:62518668-62518929(+)$1	261	11	17	13.9090
UUUUGU	chr12:100955406-100955774(+)$1	368	72	78	14.0227
UUUUCU	chr6:168313955-168314239(+)$1	284	117	123	16.0681
UUUUGU	chr2:166781029-166781307(-)$1	278	109	115	14.0227
UUUUCU	chr13:20593657-20593960(+)$1	303	289	295	16.0681
UUUUCU	chr4:187513768-187514021(-)$1	253	60	66	16.0681
UUUUCU	chr5:130785620-130786023(-)$1	403	185	191	16.0681
UUUUCU	chr8:42914053-42914356(+)$1	303	130	136	16.0681
uuuuuu	chr3:123671298-123671654(-)$1	356	318	324	13.9090
UUUUCU	chr12:62959611-62959920(+)$1	309	138	144	16.0681
UUUUCU	chr6:128642925-128643210(-)$1	285	41	47	16.0681
UUUUGU	chr1:78413135-78413367(-)$1	232	23	29	14.0227
UUUUCU	chr21:33065691-33065970(-)$1	279	119	125	16.0681
UUUUCU	chr2:160619375-160619652(+)$1	277	81	87	16.0681
UUUUUU	chr1:89271300-89271570(+)$1	270	141	147	13.9090
UUUUCU	chr22:36334721-36335027(-)$1	306	36	42	16.0681
UUUUCU	chr8:124789440-124789789(+)$1	349	49	55	16.0681
UUUUCU	chr9:102888684-102889017(+)$1	333	270	276	16.0681
UUUUCU	chr12:69663164-69663392(+)$1	228	69	75	16.0681
UUUUGU	chr14:58734041-58734338(-)$1	297	68	74	14.0227
UUUUUU	chr11:28143523-28143798(+)$1	275	216	222	13.9090
UUUUCU	chr2:186664438-186664724(-)$1	286	120	126	16.0681
UUUUCU	chr11:85689018-85689346(-)$1	328	137	143	16.0681
UUUUGU	chr6:160174255-160174600(+)$1	345	26	32	14.0227
UUUUUU	chr1:150318507-150318813(+)$1	306	242	248	13.9090
UUUUGU	chr20:44707946-44708202(-)$1	256	21	27	14.0227
UUUUGU	chr8:99718502-99718815(-)$1	313	172	178	14.0227
UUUUCU	chr12:112525214-112525613(-)$1	399	241	247	16.0681
UUUUCU	chr14:50298512-50298878(-)$1	366	59	65	16.0681
UUUUCU	chr10:69832720-69832985(-)$1	265	2	8	16.0681

#otherMatches

#Struct PSSM
hhhhhh	chr19:30461923-30462205(+)$1	282	142	148	13.9090
::::::	chr18:12986735-12986996(+)$1	261	1	7	16.0681
ddd:hh	chr3:171851284-171851547(+)$1	263	90	96	16.0681
###bbu	chr2:160253480-160253821(-)$1	341	50	56	16.0681
wwwwww	chr4:68376610-68376964(-)$1	354	208	214	16.0681
eee::C	chr7:148514170-148514435(-)$1	265	249	255	16.0681
ffffft	chr6:91254237-91254529(-)$1	292	15	21	16.0681
JJJJJJ	chr3:33438218-33438479(-)$1	261	91	97	14.0227
::::::	chr3:169888898-169889231(-)$1	333	85	91	13.9090
666666	chr2:97297103-97297386(-)$1	283	91	97	13.9090
fffbbo	chr15:62160025-62160316(-)$1	291	39	45	16.0681
eee[ff	chr1:204501766-204502064(+)$1	298	7	13	14.0227
HHHHH:	chr3:179092840-179093117(+)$1	277	50	56	16.0681
H:::::	chr12:11285968-11286254(-)$1	286	277	283	16.0681
hhhhhh	chr17:62518668-62518929(+)$1	261	11	17	13.9090
qqqqqd	chr12:100955406-100955774(+)$1	368	72	78	14.0227
====nn	chr6:168313955-168314239(+)$1	284	117	123	16.0681
c'''''	chr2:166781029-166781307(-)$1	278	109	115	14.0227
IIII}C	chr13:20593657-20593960(+)$1	303	289	295	16.0681
eeeeer	chr4:187513768-187514021(-)$1	253	60	66	16.0681
FFF{DD	chr5:130785620-130786023(-)$1	403	185	191	16.0681
IIIIII	chr8:42914053-42914356(+)$1	303	130	136	16.0681
======	chr3:123671298-123671654(-)$1	356	318	324	13.9090
::::::	chr12:62959611-62959920(+)$1	309	138	144	16.0681
DNNNNN	chr6:128642925-128643210(-)$1	285	41	47	16.0681
::::::	chr1:78413135-78413367(-)$1	232	23	29	14.0227
eeeee[	chr21:33065691-33065970(-)$1	279	119	125	16.0681
dddddd	chr2:160619375-160619652(+)$1	277	81	87	16.0681
eepppp	chr1:89271300-89271570(+)$1	270	141	147	13.9090
c22bb2	chr22:36334721-36335027(-)$1	306	36	42	16.0681
hhhhhh	chr8:124789440-124789789(+)$1	349	49	55	16.0681
YYFFFF	chr9:102888684-102889017(+)$1	333	270	276	16.0681
dd22ee	chr12:69663164-69663392(+)$1	228	69	75	16.0681
======	chr14:58734041-58734338(-)$1	297	68	74	14.0227
hhhhhp	chr11:28143523-28143798(+)$1	275	216	222	13.9090
$eeeee	chr2:186664438-186664724(-)$1	286	120	126	16.0681
fff[ao	chr11:85689018-85689346(-)$1	328	137	143	16.0681
hhhhhh	chr6:160174255-160174600(+)$1	345	26	32	14.0227
ssssss	chr1:150318507-150318813(+)$1	306	242	248	13.9090
EEEE{B	chr20:44707946-44708202(-)$1	256	21	27	14.0227
====!!	chr8:99718502-99718815(-)$1	313	172	178	14.0227
FFFFFF	chr12:112525214-112525613(-)$1	399	241	247	16.0681
e:::::	chr14:50298512-50298878(-)$1	366	59	65	16.0681
::::::	chr10:69832720-69832985(-)$1	265	2	8	16.0681

#DB
((((((	chr19:30461923-30462205(+)$1	1	142	148	13.9090
......	chr18:12986735-12986996(+)$1	1	1	7	16.0681
))).((	chr3:171851284-171851547(+)$1	1	90	96	16.0681
...((.	chr2:160253480-160253821(-)$1	1	50	56	16.0681
......	chr4:68376610-68376964(-)$1	1	208	214	16.0681
)))..)	chr7:148514170-148514435(-)$1	1	249	255	16.0681
(((((.	chr6:91254237-91254529(-)$1	1	15	21	16.0681
((((((	chr3:33438218-33438479(-)$1	1	91	97	14.0227
......	chr3:169888898-169889231(-)$1	1	85	91	13.9090
......	chr2:97297103-97297386(-)$1	1	91	97	13.9090
(((((.	chr15:62160025-62160316(-)$1	1	39	45	16.0681
(((.((	chr1:204501766-204502064(+)$1	1	7	13	14.0227
(((((.	chr3:179092840-179093117(+)$1	1	50	56	16.0681
).....	chr12:11285968-11286254(-)$1	1	277	283	16.0681
((((((	chr17:62518668-62518929(+)$1	1	11	17	13.9090
.....)	chr12:100955406-100955774(+)$1	1	72	78	14.0227
((((..	chr6:168313955-168314239(+)$1	1	117	123	16.0681
(.....	chr2:166781029-166781307(-)$1	1	109	115	14.0227
)))).)	chr13:20593657-20593960(+)$1	1	289	295	16.0681
(((((.	chr4:187513768-187514021(-)$1	1	60	66	16.0681
(((.((	chr5:130785620-130786023(-)$1	1	185	191	16.0681
((((((	chr8:42914053-42914356(+)$1	1	130	136	16.0681
))))))	chr3:123671298-123671654(-)$1	1	318	324	13.9090
......	chr12:62959611-62959920(+)$1	1	138	144	16.0681
(.....	chr6:128642925-128643210(-)$1	1	41	47	16.0681
......	chr1:78413135-78413367(-)$1	1	23	29	14.0227
(((((.	chr21:33065691-33065970(-)$1	1	119	125	16.0681
((((((	chr2:160619375-160619652(+)$1	1	81	87	16.0681
((....	chr1:89271300-89271570(+)$1	1	141	147	13.9090
)..)).	chr22:36334721-36335027(-)$1	1	36	42	16.0681
((((((	chr8:124789440-124789789(+)$1	1	49	55	16.0681
..))))	chr9:102888684-102889017(+)$1	1	270	276	16.0681
))..))	chr12:69663164-69663392(+)$1	1	69	75	16.0681
((((((	chr14:58734041-58734338(-)$1	1	68	74	14.0227
(((((.	chr11:28143523-28143798(+)$1	1	216	222	13.9090
.(((((	chr2:186664438-186664724(-)$1	1	120	126	16.0681
(((.(.	chr11:85689018-85689346(-)$1	1	137	143	16.0681
))))))	chr6:160174255-160174600(+)$1	1	26	32	14.0227
......	chr1:150318507-150318813(+)$1	1	242	248	13.9090
((((.(	chr20:44707946-44708202(-)$1	1	21	27	14.0227
((((..	chr8:99718502-99718815(-)$1	1	172	178	14.0227
))))))	chr12:112525214-112525613(-)$1	1	241	247	16.0681
).....	chr14:50298512-50298878(-)$1	1	59	65	16.0681
......	chr10:69832720-69832985(-)$1	1	2	8	16.0681

#PSSM
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
C : 0.59	G : 0.18	U : 0.15	c : 0.02	g : 0.02	u : 0.02	
U : 0.93	u : 0.06	

#score	671.3181818181812
#seq	44
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_UTR_m2_run2.nuc.txt

#NT
UGGAG	chr15:60741107-60741480(-)$1	373	249	254	15.0000
UGGAG	chrX:153586714-153586934(-)$1	220	4	9	15.0000
UGGAG	chrX:153581979-153582189(-)$1	210	46	51	15.0000
UGGAG	chr7:2402604-2402862(+)$1	258	31	36	15.0000
UGGAG	chr5:154172183-154172416(+)$1	233	132	137	15.0000
UGGAG	chr12:6716408-6716648(-)$1	240	84	89	15.0000
UGGAG	chrX:153582299-153582510(-)$1	211	172	177	15.0000
UGGAG	chrX:153588608-153588847(-)$1	239	193	198	15.0000
UGGAG	chrX:153588452-153588676(-)$1	224	22	27	15.0000
UGGAG	chrX:153588103-153588322(-)$1	219	199	204	15.0000
UGGAG	chr1:203768502-203768810(+)$1	308	123	128	15.0000
UGGAG	chr14:102551661-102551868(-)$1	207	163	168	15.0000
UGGAG	chrX:153586536-153586791(-)$1	255	166	171	15.0000
UGGAG	chr1:52260081-52260381(-)$1	300	119	124	15.0000
UGGAG	chrX:153588025-153588269(-)$1	244	146	151	15.0000
UGGAG	chr17:80443281-80443579(+)$1	298	225	230	15.0000
UGGAG	chrX:153579245-153579475(-)$1	230	166	171	15.0000
UGGAG	chrX:153587318-153587574(-)$1	256	240	245	15.0000
UGGAG	chrX:153583269-153583513(-)$1	244	205	210	15.0000
UGGAG	chr5:154173092-154173348(+)$1	256	208	213	15.0000
UGGAG	chr3:184040918-184041129(+)$1	211	198	203	15.0000
UGGAG	chr3:184042638-184042904(+)$1	266	113	118	15.0000
UGGAG	chr3:127323719-127324022(+)$1	303	67	72	15.0000
UGGAG	chrX:153580925-153581135(-)$1	210	59	64	15.0000
UGGAG	chrX:153578417-153578672(-)$1	255	215	220	15.0000
UGGAG	chrX:153580650-153580909(-)$1	259	50	55	15.0000
UGGAG	chrX:153590835-153591046(-)$1	211	131	136	15.0000
UGGAG	chr3:184041917-184042142(+)$1	225	13	18	15.0000
UGGAG	chrX:153582182-153582390(-)$1	208	52	57	15.0000
UGGAG	chrX:153589597-153589837(-)$1	240	13	18	15.0000
UGGAG	chrX:153580236-153580476(-)$1	240	29	34	15.0000
UGGAG	chr18:29437507-29437935(-)$1	428	25	30	15.0000
UGGAG	chr3:184052546-184052803(+)$1	257	171	176	15.0000
UGGAG	chr7:158457196-158457450(-)$1	254	27	32	15.0000
UGGAG	chr16:9016971-9017291(-)$1	320	60	65	15.0000
UGGAG	chr2:54135390-54135653(-)$1	263	103	108	15.0000
UGGAG	chr1:19426007-19426246(-)$1	239	177	182	15.0000
UGGAG	chr17:57738759-57738986(+)$1	227	219	224	15.0000
UGGAG	chr3:184049690-184049945(+)$1	255	216	221	15.0000
UGGAG	chrX:153586712-153586914(-)$1	202	78	83	15.0000
UGGAG	chr3:184041093-184041314(+)$1	221	23	28	15.0000
UGGAG	chrX:153588009-153588225(-)$1	216	102	107	15.0000
UGGAG	chrX:153588477-153588699(-)$1	222	45	50	15.0000
UGGAG	chrX:153583150-153583381(-)$1	231	73	78	15.0000
UGGAG	chrX:153590576-153590799(-)$1	223	130	135	15.0000
UGGAG	chr10:75526064-75526323(+)$1	259	250	255	15.0000
UGGAG	chr5:43290972-43291286(-)$1	314	117	122	15.0000
UGGAG	chr1:27105638-27105944(+)$1	306	26	31	15.0000
UGGAG	chr16:70588301-70588593(+)$1	292	105	110	15.0000
UGGAG	chrX:41057698-41057993(+)$1	295	141	146	15.0000
UGGAG	chr1:19443668-19443902(-)$1	234	172	177	15.0000
UGGAG	chrX:153587668-153587874(-)$1	206	13	18	15.0000
UGGAG	chr5:140956941-140957175(-)$1	234	177	182	15.0000
UGGAG	chrX:153586614-153586823(-)$1	209	198	203	15.0000

#otherMatches

#Struct PSSM
ddd]a	chrX:153587751-153587953(-)$1	202	92	97	15.0000
DD}EE	chr15:60741107-60741480(-)$1	373	249	254	15.0000
EEDDD	chrX:153586714-153586934(-)$1	220	4	9	15.0000
fffff	chrX:153581979-153582189(-)$1	210	46	51	15.0000
eea22	chr7:2402604-2402862(+)$1	258	31	36	15.0000
dddbb	chr5:154172183-154172416(+)$1	233	132	137	15.0000
fff!!	chr12:6716408-6716648(-)$1	240	84	89	15.0000
ggg]f	chrX:153582299-153582510(-)$1	211	172	177	15.0000
d]ddd	chrX:153588608-153588847(-)$1	239	193	198	15.0000
CCCee	chrX:153588452-153588676(-)$1	224	22	27	15.0000
qqqqe	chrX:153588103-153588322(-)$1	219	199	204	15.0000
::ccc	chr1:203768502-203768810(+)$1	308	123	128	15.0000
ff]dd	chr14:102551661-102551868(-)$1	207	163	168	15.0000
=====	chrX:153586536-153586791(-)$1	255	166	171	15.0000
bb22h	chr1:52260081-52260381(-)$1	300	119	124	15.0000
qqqqe	chrX:153588025-153588269(-)$1	244	146	151	15.0000
eeeec	chr17:80443281-80443579(+)$1	298	225	230	15.0000
c]ddd	chrX:153579245-153579475(-)$1	230	166	171	15.0000
iiiii	chrX:153587318-153587574(-)$1	256	240	245	15.0000
dd!!b	chrX:153583269-153583513(-)$1	244	205	210	15.0000
ccc:D	chr5:154173092-154173348(+)$1	256	208	213	15.0000
ee22c	chr3:184040918-184041129(+)$1	211	198	203	15.0000
ddddo	chr3:184042638-184042904(+)$1	266	113	118	15.0000
dd22f	chr3:127323719-127324022(+)$1	303	67	72	15.0000
cc22c	chrX:153580925-153581135(-)$1	210	59	64	15.0000
hhhhh	chrX:153578417-153578672(-)$1	255	215	220	15.0000
ggg[b	chrX:153580650-153580909(-)$1	259	50	55	15.0000
qqqqq	chrX:153590835-153591046(-)$1	211	131	136	15.0000
fffdd	chr3:184041917-184042142(+)$1	225	13	18	15.0000
ggg]f	chrX:153582182-153582390(-)$1	208	52	57	15.0000
[bb[g	chrX:153589597-153589837(-)$1	240	13	18	15.0000
gg::C	chrX:153580236-153580476(-)$1	240	29	34	15.0000
fffff	chr18:29437507-29437935(-)$1	428	25	30	15.0000
b]a]g	chr3:184052546-184052803(+)$1	257	171	176	15.0000
eeee[	chr7:158457196-158457450(-)$1	254	27	32	15.0000
hhhhh	chr16:9016971-9017291(-)$1	320	60	65	15.0000
ccddd	chr2:54135390-54135653(-)$1	263	103	108	15.0000
[gggg	chr1:19426007-19426246(-)$1	239	177	182	15.0000
F}DDD	chr17:57738759-57738986(+)$1	227	219	224	15.0000
gFFFF	chr3:184049690-184049945(+)$1	255	216	221	15.0000
c]fff	chrX:153586712-153586914(-)$1	202	78	83	15.0000
dbb[f	chr3:184041093-184041314(+)$1	221	23	28	15.0000
qqqqe	chrX:153588009-153588225(-)$1	216	102	107	15.0000
CCCee	chrX:153588477-153588699(-)$1	222	45	50	15.0000
bbttt	chrX:153583150-153583381(-)$1	231	73	78	15.0000
eee:f	chrX:153590576-153590799(-)$1	223	130	135	15.0000
GGGG:	chr10:75526064-75526323(+)$1	259	250	255	15.0000
EEEEE	chr5:43290972-43291286(-)$1	314	117	122	15.0000
fnnnn	chr1:27105638-27105944(+)$1	306	26	31	15.0000
KFFFF	chr16:70588301-70588593(+)$1	292	105	110	15.0000
]cccC	chrX:41057698-41057993(+)$1	295	141	146	15.0000
ccc:c	chr1:19443668-19443902(-)$1	234	172	177	15.0000
DDKKD	chrX:153587668-153587874(-)$1	206	13	18	15.0000
nbb>>	chr5:140956941-140957175(-)$1	234	177	182	15.0000
ddd]c	chrX:153586614-153586823(-)$1	209	198	203	15.0000

#DB
))).)	chrX:153587751-153587953(-)$1	1	92	97	15.0000
)).))	chr15:60741107-60741480(-)$1	1	249	254	15.0000
(((((	chrX:153586714-153586934(-)$1	1	4	9	15.0000
(((((	chrX:153581979-153582189(-)$1	1	46	51	15.0000
)))..	chr7:2402604-2402862(+)$1	1	31	36	15.0000
)))))	chr5:154172183-154172416(+)$1	1	132	137	15.0000
(((..	chr12:6716408-6716648(-)$1	1	84	89	15.0000
))).)	chrX:153582299-153582510(-)$1	1	172	177	15.0000
).)))	chrX:153588608-153588847(-)$1	1	193	198	15.0000
(((((	chrX:153588452-153588676(-)$1	1	22	27	15.0000
....)	chrX:153588103-153588322(-)$1	1	199	204	15.0000
..(((	chr1:203768502-203768810(+)$1	1	123	128	15.0000
)).))	chr14:102551661-102551868(-)$1	1	163	168	15.0000
(((((	chrX:153586536-153586791(-)$1	1	166	171	15.0000
))..)	chr1:52260081-52260381(-)$1	1	119	124	15.0000
....)	chrX:153588025-153588269(-)$1	1	146	151	15.0000
))))(	chr17:80443281-80443579(+)$1	1	225	230	15.0000
).)))	chrX:153579245-153579475(-)$1	1	166	171	15.0000
)))))	chrX:153587318-153587574(-)$1	1	240	245	15.0000
((..(	chrX:153583269-153583513(-)$1	1	205	210	15.0000
))).)	chr5:154173092-154173348(+)$1	1	208	213	15.0000
))..)	chr3:184040918-184041129(+)$1	1	198	203	15.0000
((((.	chr3:184042638-184042904(+)$1	1	113	118	15.0000
))..)	chr3:127323719-127324022(+)$1	1	67	72	15.0000
))..)	chrX:153580925-153581135(-)$1	1	59	64	15.0000
)))))	chrX:153578417-153578672(-)$1	1	215	220	15.0000
(((.(	chrX:153580650-153580909(-)$1	1	50	55	15.0000
.....	chrX:153590835-153591046(-)$1	1	131	136	15.0000
(((((	chr3:184041917-184042142(+)$1	1	13	18	15.0000
))).)	chrX:153582182-153582390(-)$1	1	52	57	15.0000
.((.(	chrX:153589597-153589837(-)$1	1	13	18	15.0000
))..(	chrX:153580236-153580476(-)$1	1	29	34	15.0000
)))))	chr18:29437507-29437935(-)$1	1	25	30	15.0000
).).)	chr3:184052546-184052803(+)$1	1	171	176	15.0000
((((.	chr7:158457196-158457450(-)$1	1	27	32	15.0000
)))))	chr16:9016971-9017291(-)$1	1	60	65	15.0000
(((((	chr2:54135390-54135653(-)$1	1	103	108	15.0000
.((((	chr1:19426007-19426246(-)$1	1	177	182	15.0000
).)))	chr17:57738759-57738986(+)$1	1	219	224	15.0000
)))))	chr3:184049690-184049945(+)$1	1	216	221	15.0000
).)))	chrX:153586712-153586914(-)$1	1	78	83	15.0000
)((.(	chr3:184041093-184041314(+)$1	1	23	28	15.0000
....)	chrX:153588009-153588225(-)$1	1	102	107	15.0000
(((((	chrX:153588477-153588699(-)$1	1	45	50	15.0000
((...	chrX:153583150-153583381(-)$1	1	73	78	15.0000
))).(	chrX:153590576-153590799(-)$1	1	130	135	15.0000
)))).	chr10:75526064-75526323(+)$1	1	250	255	15.0000
(((((	chr5:43290972-43291286(-)$1	1	117	122	15.0000
(....	chr1:27105638-27105944(+)$1	1	26	31	15.0000
.((((	chr16:70588301-70588593(+)$1	1	105	110	15.0000
.)))(	chrX:41057698-41057993(+)$1	1	141	146	15.0000
))).(	chr1:19443668-19443902(-)$1	1	172	177	15.0000
((..(	chrX:153587668-153587874(-)$1	1	13	18	15.0000
.))..	chr5:140956941-140957175(-)$1	1	177	182	15.0000
))).)	chrX:153586614-153586823(-)$1	1	198	203	15.0000

#PSSM
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	

#score	825.0000000000001
#seq	55
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_transcript_m3_run2.nuc.txt

#NT
UUUGUG	chr3:49397173-49397451(-)$1	278	118	124	13.9803
UCUGUG	chrX:151121678-151121911(-)$1	233	209	215	15.2549
UAUGUG	chr16:23592321-23592594(-)$1	273	221	227	13.6862
UCUGUG	chr16:31199215-31199470(+)$1	255	202	208	15.2549
UCUGUG	chrX:153664428-153664725(+)$1	297	286	292	15.2549
UGUGUG	chr1:47681948-47682232(-)$1	284	171	177	14.0784
UCUGUG	chr3:49135329-49135588(-)$1	259	77	83	15.2549
UCUGUG	chr8:97243104-97243391(-)$1	287	123	129	15.2549
UGUGUG	chr12:133138827-133139109(+)$1	282	191	197	14.0784
ugugug	chr2:132273524-132273812(+)$1	288	130	136	14.0784
UUUGUG	chr1:203838979-203839201(+)$1	222	13	19	13.9803
UUUGUG	chr2:55462541-55462770(+)$1	229	8	14	13.9803
UAUGUG	chr9:35547034-35547354(+)$1	320	285	291	13.6862
ucugug	chr19:3661380-3661632(-)$1	252	109	115	15.2549
UUUGUG	chr20:32868605-32868841(-)$1	236	83	89	13.9803
UUUGUG	chr18:43669702-43670023(-)$1	321	52	58	13.9803
UCUGUG	chr10:51590124-51590423(+)$1	299	173	179	15.2549
UUUGUG	chr2:55462463-55462674(+)$1	211	86	92	13.9803
Uaugug	chr22:19438851-19439090(-)$1	239	34	40	13.6862
UUUGUG	chr5:132091800-132092064(-)$1	264	159	165	13.9803
ucugug	chr3:6616563-6616821(+)$1	258	78	84	15.2549
UAUGUG	chr12:21788273-21788490(-)$1	217	121	127	13.6862
UCUGUG	chr17:34956757-34957012(+)$1	255	212	218	15.2549
UCUGUG	chr11:62283401-62283651(-)$1	250	98	104	15.2549
UGUGUG	chr22:38879477-38879710(-)$1	233	25	31	14.0784
ucugug	chr22:50016777-50017049(-)$1	272	200	206	15.2549
UGUGUG	chr4:109543623-109543837(+)$1	214	126	132	14.0784
UCUGUG	chr1:145442427-145442644(+)$1	217	210	216	15.2549
UAUGUG	chr16:23592259-23592521(-)$1	262	148	154	13.6862
UCUGUG	chr1:26227011-26227287(-)$1	276	78	84	15.2549
UUUGUG	chr4:48862854-48863119(+)$1	265	49	55	13.9803
UCUGUG	chr12:54678532-54678758(+)$1	226	8	14	15.2549
UGUGUG	chr16:70605653-70605914(+)$1	261	95	101	14.0784
UCUGUG	chr10:73576444-73576682(-)$1	238	152	158	15.2549
UUUGUG	chr1:8921042-8921249(-)$1	207	150	156	13.9803
UAUGUG	chr19:17212603-17212933(+)$1	330	110	116	13.6862
UGUGUG	chr17:79876217-79876502(-)$1	285	34	40	14.0784
UAUGUG	chr15:40512956-40513207(+)$1	251	71	77	13.6862
UCUGUG	chr8:42262870-42263177(+)$1	307	188	194	15.2549
UGUGUG	chr21:40714326-40714586(-)$1	260	8	14	14.0784
UCUGUG	chrX:70520049-70520282(+)$1	233	59	65	15.2549
UCUGUG	chr16:89629515-89629763(+)$1	248	104	110	15.2549
UGUGUG	chr4:109588754-109589029(+)$1	275	126	132	14.0784
UCUGUG	chr16:89629563-89629786(+)$1	223	56	62	15.2549
UGUGUG	chr10:99218014-99218308(-)$1	294	54	60	14.0784
UCUGUG	chr12:98994911-98995157(+)$1	246	75	81	15.2549
UUUGUG	chr16:75691096-75691379(+)$1	283	135	141	13.9803
UCUGUG	chr17:8062583-8062867(-)$1	284	204	210	15.2549
UGUGUG	chr6:26196981-26197220(-)$1	239	166	172	14.0784
UCUGUG	chr22:50032202-50032452(-)$1	250	158	164	15.2549

#otherMatches

#Struct PSSM
mmmadd	chr17:2232346-2232583(-)$1	237	143	149	15.2549
ddd]gg	chr3:49397173-49397451(-)$1	278	118	124	13.9803
obb22b	chrX:151121678-151121911(-)$1	233	209	215	15.2549
ccpppp	chr16:23592321-23592594(-)$1	273	221	227	13.6862
hh::JJ	chr16:31199215-31199470(+)$1	255	202	208	15.2549
ffffff	chrX:153664428-153664725(+)$1	297	286	292	15.2549
ee]bb]	chr1:47681948-47682232(-)$1	284	171	177	14.0784
dddd[b	chr3:49135329-49135588(-)$1	259	77	83	15.2549
CMMMMD	chr8:97243104-97243391(-)$1	287	123	129	15.2549
nnnnnb	chr12:133138827-133139109(+)$1	282	191	197	14.0784
iiifff	chr2:132273524-132273812(+)$1	288	130	136	14.0784
FFFFFB	chr1:203838979-203839201(+)$1	222	13	19	13.9803
eeeee!	chr2:55462541-55462770(+)$1	229	8	14	13.9803
B}CCCc	chr9:35547034-35547354(+)$1	320	285	291	13.6862
iiiii:	chr19:3661380-3661632(-)$1	252	109	115	15.2549
ppccc]	chr20:32868605-32868841(-)$1	236	83	89	13.9803
$$$$$d	chr18:43669702-43670023(-)$1	321	52	58	13.9803
dddd[g	chr10:51590124-51590423(+)$1	299	173	179	15.2549
ddddd!	chr2:55462463-55462674(+)$1	211	86	92	13.9803
gggggg	chr22:19438851-19439090(-)$1	239	34	40	13.6862
mmffff	chr5:132091800-132092064(-)$1	264	159	165	13.9803
eeeeeb	chr3:6616563-6616821(+)$1	258	78	84	15.2549
2ccc]e	chr12:21788273-21788490(-)$1	217	121	127	13.6862
ddddnn	chr17:34956757-34957012(+)$1	255	212	218	15.2549
:::ccc	chr11:62283401-62283651(-)$1	250	98	104	15.2549
:BB{EE	chr22:38879477-38879710(-)$1	233	25	31	14.0784
6666ff	chr22:50016777-50017049(-)$1	272	200	206	15.2549
eea]dd	chr4:109543623-109543837(+)$1	214	126	132	14.0784
GGGG::	chr1:145442427-145442644(+)$1	217	210	216	15.2549
ccpppp	chr16:23592259-23592521(-)$1	262	148	154	13.6862
H:cccm	chr1:26227011-26227287(-)$1	276	78	84	15.2549
fffff:	chr4:48862854-48863119(+)$1	265	49	55	13.9803
::cccd	chr12:54678532-54678758(+)$1	226	8	14	15.2549
3eeeee	chr16:70605653-70605914(+)$1	261	95	101	14.0784
bb22dd	chr10:73576444-73576682(-)$1	238	152	158	15.2549
22bb]e	chr1:8921042-8921249(-)$1	207	150	156	13.9803
ssseee	chr19:17212603-17212933(+)$1	330	110	116	13.6862
::::::	chr17:79876217-79876502(-)$1	285	34	40	14.0784
[eeeee	chr15:40512956-40513207(+)$1	251	71	77	13.6862
ff::::	chr8:42262870-42263177(+)$1	307	188	194	15.2549
FFFF:d	chr21:40714326-40714586(-)$1	260	8	14	14.0784
bbnnnn	chrX:70520049-70520282(+)$1	233	59	65	15.2549
pppppa	chr16:89629515-89629763(+)$1	248	104	110	15.2549
ffffff	chr4:109588754-109589029(+)$1	275	126	132	14.0784
ggg$$$	chr16:89629563-89629786(+)$1	223	56	62	15.2549
gggppp	chr10:99218014-99218308(-)$1	294	54	60	14.0784
99999b	chr12:98994911-98995157(+)$1	246	75	81	15.2549
4dddd]	chr16:75691096-75691379(+)$1	283	135	141	13.9803
uuufff	chr17:8062583-8062867(-)$1	284	204	210	15.2549
3eeeee	chr6:26196981-26197220(-)$1	239	166	172	14.0784
JJJJJJ	chr22:50032202-50032452(-)$1	250	158	164	15.2549

#DB
...)))	chr17:2232346-2232583(-)$1	1	143	149	15.2549
))).))	chr3:49397173-49397451(-)$1	1	118	124	13.9803
.))..)	chrX:151121678-151121911(-)$1	1	209	215	15.2549
((....	chr16:23592321-23592594(-)$1	1	221	227	13.6862
))..))	chr16:31199215-31199470(+)$1	1	202	208	15.2549
))))))	chrX:153664428-153664725(+)$1	1	286	292	15.2549
)).)).	chr1:47681948-47682232(-)$1	1	171	177	14.0784
((((.(	chr3:49135329-49135588(-)$1	1	77	83	15.2549
(....(	chr8:97243104-97243391(-)$1	1	123	129	15.2549
.....)	chr12:133138827-133139109(+)$1	1	191	197	14.0784
)))(((	chr2:132273524-132273812(+)$1	1	130	136	14.0784
((((((	chr1:203838979-203839201(+)$1	1	13	19	13.9803
(((((.	chr2:55462541-55462770(+)$1	1	8	14	13.9803
).)))(	chr9:35547034-35547354(+)$1	1	285	291	13.6862
))))).	chr19:3661380-3661632(-)$1	1	109	115	15.2549
..))).	chr20:32868605-32868841(-)$1	1	83	89	13.9803
.....(	chr18:43669702-43670023(-)$1	1	52	58	13.9803
((((.(	chr10:51590124-51590423(+)$1	1	173	179	15.2549
(((((.	chr2:55462463-55462674(+)$1	1	86	92	13.9803
))))))	chr22:19438851-19439090(-)$1	1	34	40	13.6862
..))))	chr5:132091800-132092064(-)$1	1	159	165	13.9803
)))))(	chr3:6616563-6616821(+)$1	1	78	84	15.2549
.))).)	chr12:21788273-21788490(-)$1	1	121	127	13.6862
((((..	chr17:34956757-34957012(+)$1	1	212	218	15.2549
...(((	chr11:62283401-62283651(-)$1	1	98	104	15.2549
.((.((	chr22:38879477-38879710(-)$1	1	25	31	14.0784
....))	chr22:50016777-50017049(-)$1	1	200	206	15.2549
))).))	chr4:109543623-109543837(+)$1	1	126	132	14.0784
))))..	chr1:145442427-145442644(+)$1	1	210	216	15.2549
((....	chr16:23592259-23592521(-)$1	1	148	154	13.6862
(.(((.	chr1:26227011-26227287(-)$1	1	78	84	15.2549
))))).	chr4:48862854-48863119(+)$1	1	49	55	13.9803
..((((	chr12:54678532-54678758(+)$1	1	8	14	15.2549
.)))))	chr16:70605653-70605914(+)$1	1	95	101	14.0784
))..))	chr10:73576444-73576682(-)$1	1	152	158	15.2549
..)).)	chr1:8921042-8921249(-)$1	1	150	156	13.9803
...)))	chr19:17212603-17212933(+)$1	1	110	116	13.6862
......	chr17:79876217-79876502(-)$1	1	34	40	14.0784
.(((((	chr15:40512956-40513207(+)$1	1	71	77	13.6862
))....	chr8:42262870-42263177(+)$1	1	188	194	15.2549
((((.(	chr21:40714326-40714586(-)$1	1	8	14	14.0784
((....	chrX:70520049-70520282(+)$1	1	59	65	15.2549
.....)	chr16:89629515-89629763(+)$1	1	104	110	15.2549
)(((((	chr4:109588754-109589029(+)$1	1	126	132	14.0784
(((...	chr16:89629563-89629786(+)$1	1	56	62	15.2549
(((...	chr10:99218014-99218308(-)$1	1	54	60	14.0784
.....)	chr12:98994911-98995157(+)$1	1	75	81	15.2549
.)))).	chr16:75691096-75691379(+)$1	1	135	141	13.9803
...)))	chr17:8062583-8062867(-)$1	1	204	210	15.2549
.)))))	chr6:26196981-26197220(-)$1	1	166	172	14.0784
((((((	chr22:50032202-50032452(-)$1	1	158	164	15.2549

#PSSM
U : 0.92	u : 0.07	
C : 0.39	U : 0.19	G : 0.19	A : 0.11	c : 0.05	g : 0.01	a : 0.01	
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	

#score	741.3333333333338
#seq	51
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_UTR_m2_run2.nuc.txt

#NT
UAAAGAAA	chr3:121416019-121416268(-)$1	249	33	41	15.7924
AUAAGAAA	chr11:64536800-64537124(-)$1	324	314	322	15.4150
GAAAGAAA	chr14:56122660-56122950(+)$1	290	102	110	15.6981
aagagaaa	chr14:102549278-102549535(-)$1	257	76	84	16.1698
AAGAGAAA	chr16:58576329-58576569(-)$1	240	114	122	16.1698
AAAAGAAA	chr5:139905658-139905927(+)$1	269	79	87	19.7547
aagagaaa	chr14:102549270-102549478(-)$1	208	19	27	16.1698
UAAAGAAA	chr3:184042974-184043186(+)$1	212	123	131	15.7924
UAAAGAAA	chr22:41225545-41225778(-)$1	233	156	164	15.7924
AAAAGAAA	chr20:2638673-2639016(+)$1	343	4	12	19.7547
AACAGAAA	chr7:134617985-134618254(+)$1	269	26	34	15.6981
AAAAGAAA	chr5:70806715-70807030(+)$1	315	61	69	19.7547
GAAAGAAA	chr14:73572803-73573088(+)$1	285	128	136	15.6981
AAAAGAAG	chr7:138269519-138269798(+)$1	279	259	267	15.3207
AAAAUAAA	chr21:40571151-40571465(-)$1	314	38	46	16.4528
AAUAGAAA	chr6:64412376-64412630(+)$1	254	95	103	15.7924
AAAAUAAA	chr12:104325991-104326221(+)$1	230	194	202	16.4528
AAAAGAGA	chr6:56380189-56380455(-)$1	266	246	254	14.9433
AAAAGGAA	chr2:170668076-170668376(+)$1	300	255	263	15.5094
AAAAGGAA	chr3:121411045-121411290(-)$1	245	96	104	15.5094
AAAAAAAA	chr10:126673385-126673740(+)$1	355	175	183	16.4528
AAGAGAAA	chr9:134350422-134350663(+)$1	241	226	234	16.1698
AAAAGGAA	chr2:109101997-109102295(+)$1	298	166	174	15.5094
CAAAGAAA	chr7:151855904-151856224(-)$1	320	200	208	15.7924
AAAAGAAU	chr21:34931791-34932030(+)$1	239	148	156	15.2264
AAAAGAAC	chr6:56422027-56422278(-)$1	251	83	91	15.2264
aaaaaAAA	chr17:62532623-62532961(+)$1	338	0	8	16.4528
AGAAGAAA	chr13:77817127-77817392(-)$1	265	146	154	15.5094
caaagaAA	chr14:56103814-56104098(+)$1	284	60	68	15.7924
AAAGGAAA	chr6:56391225-56391464(-)$1	239	43	51	14.9433
AGAAGAAA	chr5:140905529-140905839(-)$1	310	134	142	15.5094
CAAAGAAA	chr3:121413786-121414055(-)$1	269	235	243	15.7924
AAGAGAAA	chr5:70806419-70806657(+)$1	238	111	119	16.1698
AAAAGAAA	chr9:139342204-139342460(-)$1	256	112	120	19.7547
AAAAGAAA	chr5:96097886-96098177(+)$1	291	86	94	19.7547
AAAAGGAA	chr6:64408053-64408331(+)$1	278	2	10	15.5094
AAAACAAA	chr6:64413325-64413584(+)$1	259	144	152	16.2641
AAAAGAAA	chr9:95063826-95064132(-)$1	306	42	50	19.7547
agaagaaa	chr7:138269883-138270144(+)$1	261	17	25	15.5094
AAGAGAAA	chr6:56394361-56394642(-)$1	281	218	226	16.1698
AAAAUAAA	chr6:56392190-56392451(-)$1	261	223	231	16.4528
AAAAUAAA	chr14:31569421-31569636(-)$1	215	133	141	16.4528
AAAAAAAA	chr9:100777543-100777858(+)$1	315	241	249	16.4528
AAAACAAA	chr6:56436797-56437029(-)$1	232	76	84	16.2641
AAUAGAAA	chr3:121415966-121416219(-)$1	253	35	43	15.7924
AAAAUAAA	chr12:104326021-104326239(+)$1	218	164	172	16.4528
AUAAGAAA	chr5:179151588-179151885(+)$1	297	91	99	15.4150
AAAAGAAA	chr4:39329085-39329335(-)$1	250	180	188	19.7547
aaaagaaa	chr4:73968102-73968335(-)$1	233	116	124	19.7547
AAAAAAAA	chr4:40144218-40144502(+)$1	284	230	238	16.4528
AAAAGAAG	chr17:18149913-18150238(-)$1	325	293	301	15.3207
aaaaaaaa	chr5:179153579-179153795(+)$1	216	0	8	16.4528

#otherMatches

#Struct PSSM
yyyyyyyy	chr6:56350099-56350339(-)$1	240	72	80	16.2641
::::::::	chr3:121416019-121416268(-)$1	249	33	41	15.7924
FFFFFYYB	chr11:64536800-64537124(-)$1	324	314	322	15.4150
444=====	chr14:56122660-56122950(+)$1	290	102	110	15.6981
::::::::	chr14:102549278-102549535(-)$1	257	76	84	16.1698
tttttttt	chr16:58576329-58576569(-)$1	240	114	122	16.1698
::::::::	chr5:139905658-139905927(+)$1	269	79	87	19.7547
^^^^^^^^	chr14:102549270-102549478(-)$1	208	19	27	16.1698
d:::::::	chr3:184042974-184043186(+)$1	212	123	131	15.7924
::::::ee	chr22:41225545-41225778(-)$1	233	156	164	15.7924
gggggmmm	chr20:2638673-2639016(+)$1	343	4	12	19.7547
::::::::	chr7:134617985-134618254(+)$1	269	26	34	15.6981
nnnbb444	chr5:70806715-70807030(+)$1	315	61	69	19.7547
ttttbb33	chr14:73572803-73573088(+)$1	285	128	136	15.6981
@@@@@@@H	chr7:138269519-138269798(+)$1	279	259	267	15.3207
:::ccc!!	chr21:40571151-40571465(-)$1	314	38	46	16.4528
wwwwwwww	chr6:64412376-64412630(+)$1	254	95	103	15.7924
::::::::	chr12:104325991-104326221(+)$1	230	194	202	16.4528
:::DDDDY	chr6:56380189-56380455(-)$1	266	246	254	14.9433
::::ccc"	chr2:170668076-170668376(+)$1	300	255	263	15.5094
:::::::G	chr3:121411045-121411290(-)$1	245	96	104	15.5094
::::::::	chr10:126673385-126673740(+)$1	355	175	183	16.4528
@@@@@@@@	chr9:134350422-134350663(+)$1	241	226	234	16.1698
:::::CCC	chr2:109101997-109102295(+)$1	298	166	174	15.5094
g:::DDDD	chr7:151855904-151856224(-)$1	320	200	208	15.7924
d&&&&&&&	chr21:34931791-34932030(+)$1	239	148	156	15.2264
qqqqqqqb	chr6:56422027-56422278(-)$1	251	83	91	15.2264
::::::::	chr17:62532623-62532961(+)$1	338	0	8	16.4528
G}A_____	chr13:77817127-77817392(-)$1	265	146	154	15.5094
CCNNNNNF	chr14:56103814-56104098(+)$1	284	60	68	15.7924
vvvvvvvv	chr6:56391225-56391464(-)$1	239	43	51	14.9433
cc::::::	chr5:140905529-140905839(-)$1	310	134	142	15.5094
d0000000	chr3:121413786-121414055(-)$1	269	235	243	15.7924
::bboooo	chr5:70806419-70806657(+)$1	238	111	119	16.1698
========	chr9:139342204-139342460(-)$1	256	112	120	19.7547
n=======	chr5:96097886-96098177(+)$1	291	86	94	19.7547
::::::::	chr6:64408053-64408331(+)$1	278	2	10	15.5094
::::hhhh	chr6:64413325-64413584(+)$1	259	144	152	16.2641
KKJJJJJJ	chr9:95063826-95064132(-)$1	306	42	50	19.7547
{DDDD:::	chr7:138269883-138270144(+)$1	261	17	25	15.5094
:::::ggg	chr6:56394361-56394642(-)$1	281	218	226	16.1698
ee[cccmm	chr6:56392190-56392451(-)$1	261	223	231	16.4528
6=======	chr14:31569421-31569636(-)$1	215	133	141	16.4528
vvvvvvvv	chr9:100777543-100777858(+)$1	315	241	249	16.4528
"""eeeee	chr6:56436797-56437029(-)$1	232	76	84	16.2641
fffffmmm	chr3:121415966-121416219(-)$1	253	35	43	15.7924
::::::::	chr12:104326021-104326239(+)$1	218	164	172	16.4528
ffff5555	chr5:179151588-179151885(+)$1	297	91	99	15.4150
99999999	chr4:39329085-39329335(-)$1	250	180	188	19.7547
bdddd333	chr4:73968102-73968335(-)$1	233	116	124	19.7547
GGGGGGGE	chr4:40144218-40144502(+)$1	284	230	238	16.4528
////////	chr17:18149913-18150238(-)$1	325	293	301	15.3207
::::::::	chr5:179153579-179153795(+)$1	216	0	8	16.4528

#DB
........	chr6:56350099-56350339(-)$1	1	72	80	16.2641
........	chr3:121416019-121416268(-)$1	1	33	41	15.7924
)))))..)	chr11:64536800-64537124(-)$1	1	314	322	15.4150
...)))))	chr14:56122660-56122950(+)$1	1	102	110	15.6981
........	chr14:102549278-102549535(-)$1	1	76	84	16.1698
........	chr16:58576329-58576569(-)$1	1	114	122	16.1698
........	chr5:139905658-139905927(+)$1	1	79	87	19.7547
........	chr14:102549270-102549478(-)$1	1	19	27	16.1698
).......	chr3:184042974-184043186(+)$1	1	123	131	15.7924
......((	chr22:41225545-41225778(-)$1	1	156	164	15.7924
(((((...	chr20:2638673-2639016(+)$1	1	4	12	19.7547
........	chr7:134617985-134618254(+)$1	1	26	34	15.6981
...))...	chr5:70806715-70807030(+)$1	1	61	69	19.7547
....))..	chr14:73572803-73573088(+)$1	1	128	136	15.6981
.......)	chr7:138269519-138269798(+)$1	1	259	267	15.3207
...(((..	chr21:40571151-40571465(-)$1	1	38	46	16.4528
........	chr6:64412376-64412630(+)$1	1	95	103	15.7924
........	chr12:104325991-104326221(+)$1	1	194	202	16.4528
...)))).	chr6:56380189-56380455(-)$1	1	246	254	14.9433
....(((.	chr2:170668076-170668376(+)$1	1	255	263	15.5094
.......)	chr3:121411045-121411290(-)$1	1	96	104	15.5094
........	chr10:126673385-126673740(+)$1	1	175	183	16.4528
........	chr9:134350422-134350663(+)$1	1	226	234	16.1698
.....)))	chr2:109101997-109102295(+)$1	1	166	174	15.5094
)...))))	chr7:151855904-151856224(-)$1	1	200	208	15.7924
(.......	chr21:34931791-34932030(+)$1	1	148	156	15.2264
.......)	chr6:56422027-56422278(-)$1	1	83	91	15.2264
........	chr17:62532623-62532961(+)$1	1	0	8	16.4528
).).....	chr13:77817127-77817392(-)$1	1	146	154	15.5094
((.....(	chr14:56103814-56104098(+)$1	1	60	68	15.7924
........	chr6:56391225-56391464(-)$1	1	43	51	14.9433
))......	chr5:140905529-140905839(-)$1	1	134	142	15.5094
).......	chr3:121413786-121414055(-)$1	1	235	243	15.7924
..((....	chr5:70806419-70806657(+)$1	1	111	119	16.1698
))))))))	chr9:139342204-139342460(-)$1	1	112	120	19.7547
.)))))))	chr5:96097886-96098177(+)$1	1	86	94	19.7547
........	chr6:64408053-64408331(+)$1	1	2	10	15.5094
....((((	chr6:64413325-64413584(+)$1	1	144	152	16.2641
..((((((	chr9:95063826-95064132(-)$1	1	42	50	19.7547
.((((...	chr7:138269883-138270144(+)$1	1	17	25	15.5094
.....(((	chr6:56394361-56394642(-)$1	1	218	226	16.1698
((.(((..	chr6:56392190-56392451(-)$1	1	223	231	16.4528
.)))))))	chr14:31569421-31569636(-)$1	1	133	141	16.4528
........	chr9:100777543-100777858(+)$1	1	241	249	16.4528
...(((((	chr6:56436797-56437029(-)$1	1	76	84	16.2641
(((((...	chr3:121415966-121416219(-)$1	1	35	43	15.7924
........	chr12:104326021-104326239(+)$1	1	164	172	16.4528
))))....	chr5:179151588-179151885(+)$1	1	91	99	15.4150
........	chr4:39329085-39329335(-)$1	1	180	188	19.7547
)))))...	chr4:73968102-73968335(-)$1	1	116	124	19.7547
))))))))	chr4:40144218-40144502(+)$1	1	230	238	16.4528
........	chr17:18149913-18150238(-)$1	1	293	301	15.3207
........	chr5:179153579-179153795(+)$1	1	0	8	16.4528

#PSSM
A : 0.73	a : 0.11	U : 0.05	G : 0.03	C : 0.03	c : 0.01	
A : 0.79	a : 0.11	U : 0.03	G : 0.03	g : 0.01	
A : 0.73	a : 0.09	G : 0.07	g : 0.03	U : 0.03	C : 0.01	
A : 0.84	a : 0.13	G : 0.01	
G : 0.66	g : 0.09	U : 0.09	C : 0.05	A : 0.05	a : 0.03	
A : 0.81	a : 0.11	G : 0.07	
A : 0.88	a : 0.09	G : 0.01	
A : 0.83	a : 0.09	G : 0.03	U : 0.01	C : 0.01	

#score	872.1886792452833
#seq	53
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_CDS_m3_run2.nuc.txt

#NT
UUAUUUUUU	chr7:91643462-91643696(+)$1	234	167	176	12.7142
GAAUUUUAC	chr7:158485905-158486185(-)$1	280	260	269	11.9206
UUAUUUUUU	chr7:27832583-27832810(+)$1	227	67	76	12.7142
UAAUUUUUU	chr12:21789969-21790229(-)$1	260	88	97	15.8095
UAAGUUUGC	chr11:62284844-62285115(-)$1	271	59	68	10.8095
UAAUUUUUU	chr14:56107746-56108026(+)$1	280	74	83	15.8095
UAAUGUUCA	chr11:62293185-62293427(-)$1	242	187	196	10.2539
UAAUUGUAC	chr3:37368338-37368589(+)$1	251	155	164	10.8888
UGAUUUUAG	chr21:38528976-38529280(+)$1	304	35	44	11.6825
UAAUAUUUC	chrM:9842-10050(+)$1	208	32	41	11.6031
UAAAUUUAA	chr4:68358489-68358789(-)$1	300	3	12	11.2857
AAAUUUUGA	chr3:169700848-169701142(+)$1	294	276	285	11.4444
UAAUUUCUU	chr12:46357788-46358061(-)$1	273	3	12	11.3650
UAAAUUUGA	chr11:62291603-62291812(-)$1	209	188	197	10.9682
UAAAUUUUA	chr10:70098796-70099029(+)$1	233	222	231	11.6031
UAAUUCUUU	chr1:165723364-165723613(-)$1	249	89	98	11.3650
UGAUUUUCU	chr20:32681408-32681637(-)$1	229	85	94	11.5238
UUAUUUUAA	chr7:91624922-91625176(+)$1	254	198	207	12.3174
UAACUUUGG	chr13:98667721-98667996(+)$1	275	1	10	10.2539
GAAUUUUCA	chr11:3023120-3023367(-)$1	247	235	244	11.2063
UUAUUUUAU	chr7:26233143-26233355(-)$1	212	27	36	12.3968
UAAUUAUAC	chr6:35837484-35837745(-)$1	261	164	173	10.9682
UAAUUUAGA	chr6:87970248-87970555(+)$1	307	115	124	10.8888
GAAUUUUAA	chr5:33467644-33467905(+)$1	261	160	169	11.9206
UCAUUUUCC	chrM:12622-12843(+)$1	221	79	88	11.4444
UAAUUUAUG	chrM:14224-14452(-)$1	228	151	160	11.0476
GAAUUUUGG	chrM:14367-14602(-)$1	235	59	68	11.1269
UAAUAUUUC	chrM:9790-10002(+)$1	212	84	93	11.6031
AAAUUUUUU	chr8:101725257-101725496(-)$1	239	76	85	12.1587
UUAUUUUAU	chr7:26233155-26233376(-)$1	221	48	57	12.3968
UUAUUUUUC	chr1:220152740-220153016(-)$1	276	36	45	12.6349
UCAUUUUCC	chrM:12661-12887(+)$1	226	40	49	11.4444
UGAUUUUAC	chr2:190339931-190340257(+)$1	326	76	85	12.1587
UUAUUUUGA	chr7:91623834-91624063(+)$1	229	27	36	11.9999
UAAUUCUGA	chr21:40571099-40571412(-)$1	313	98	107	10.6507
UAAUUUAUG	chrM:14203-14424(-)$1	221	123	132	11.0476
UAAUAUUUC	chrM:9850-10056(+)$1	206	24	33	11.6031
UAAUAUUCA	chrM:12513-12766(+)$1	253	83	92	10.5714
UGAUUUUAU	chr15:44063202-44063416(+)$1	214	117	126	12.2380
UAAUUUAUG	chrM:14252-14487(-)$1	235	186	195	11.0476
AAAUUUUAU	chr7:91667875-91668120(+)$1	245	98	107	11.8412
UAAUUUUCU	chr5:72286241-72286543(+)$1	302	10	19	14.7777
UACUUUUAA	chr21:34931479-34931768(+)$1	289	45	54	10.6507
UAAUUUGAA	chr4:13605609-13605939(-)$1	330	70	79	10.9682
UAAUUUUAA	chrM:9856-10085(+)$1	229	216	225	15.4126
UCAUUUUUU	chr16:8997030-8997358(-)$1	328	47	56	12.5555
UAAUUUUGC	chr12:122995555-122995760(-)$1	205	14	23	15.0952
UAAUUUUAA	chrM:9885-10090(+)$1	205	187	196	15.4126
UAAGUUUGU	chr7:26232052-26232297(-)$1	245	64	73	10.8888
AAAUUUUGC	chr8:53569110-53569406(-)$1	296	241	250	11.4444
AAAUUUUGG	chr8:30938619-30938886(+)$1	267	131	140	10.9682
GAAUUUUGG	chrM:14416-14644(-)$1	228	101	110	11.1269
UAAUUUUUG	chr7:72903449-72903686(-)$1	237	176	185	15.2539
UAUUUUUUU	chr1:22033182-22033428(-)$1	246	50	59	11.0476
GAAUUUUGG	chrM:14452-14671(-)$1	219	128	137	11.1269
UAAAUUUAU	chr14:61278600-61278930(+)$1	330	66	75	11.3650
UAAUUAUUA	chr7:91708343-91708627(+)$1	284	39	48	11.2857
UAAUUUUUU	chr1:171526286-171526511(+)$1	225	80	89	15.8095
UGAUUUUUC	chr17:34171000-34171235(+)$1	235	49	58	12.4761
GAAUUUUAG	chr2:55771958-55772236(+)$1	278	26	35	11.4444
UAAUAUUUC	chrM:9802-10037(+)$1	235	72	81	11.6031
UCAUUUUCC	chrM:12653-12861(+)$1	208	48	57	11.4444

#otherMatches

#Struct PSSM
CC:::::::	chrM:12643-12853(+)$1	210	58	67	11.4444
mggggggg2	chr7:91643462-91643696(+)$1	234	167	176	12.7142
DDZZZBB}D	chr7:158485905-158486185(-)$1	280	260	269	11.9206
===!!iiii	chr7:27832583-27832810(+)$1	227	67	76	12.7142
##ddddmmm	chr12:21789969-21790229(-)$1	260	88	97	15.8095
hhhhhhA}F	chr11:62284844-62285115(-)$1	271	59	68	10.8095
:::::::::	chr14:56107746-56108026(+)$1	280	74	83	15.8095
=========	chr11:62293185-62293427(-)$1	242	187	196	10.2539
888gggggg	chr3:37368338-37368589(+)$1	251	155	164	10.8888
ddddooooo	chr21:38528976-38529280(+)$1	304	35	44	11.6825
:::::::::	chrM:9842-10050(+)$1	208	32	41	11.6031
:::::::::	chr4:68358489-68358789(-)$1	300	3	12	11.2857
iiiiiiiGG	chr3:169700848-169701142(+)$1	294	276	285	11.4444
{GGGGGGGD	chr12:46357788-46358061(-)$1	273	3	12	11.3650
YYEEEEE~~	chr11:62291603-62291812(-)$1	209	188	197	10.9682
=========	chr10:70098796-70099029(+)$1	233	222	231	11.6031
b"""eeeee	chr1:165723364-165723613(-)$1	249	89	98	11.3650
iiiiiiccc	chr20:32681408-32681637(-)$1	229	85	94	11.5238
hhhhhhhh:	chr7:91624922-91625176(+)$1	254	198	207	12.3174
:::DDDD{D	chr13:98667721-98667996(+)$1	275	1	10	10.2539
JJJJJJJJJ	chr11:3023120-3023367(-)$1	247	235	244	11.2063
cc[iiiiii	chr7:26233143-26233355(-)$1	212	27	36	12.3968
ff####ddd	chr6:35837484-35837745(-)$1	261	164	173	10.9682
:::::::::	chr6:87970248-87970555(+)$1	307	115	124	10.8888
:ffffffoo	chr5:33467644-33467905(+)$1	261	160	169	11.9206
CC:::::::	chrM:12622-12843(+)$1	221	79	88	11.4444
22ffffff]	chrM:14224-14452(-)$1	228	151	160	11.0476
:::::iiii	chrM:14367-14602(-)$1	235	59	68	11.1269
dddd:::::	chrM:9790-10002(+)$1	212	84	93	11.6031
::::::ggg	chr8:101725257-101725496(-)$1	239	76	85	12.1587
cc[iiiiii	chr7:26233155-26233376(-)$1	221	48	57	12.3968
hhhhh:ccc	chr1:220152740-220153016(-)$1	276	36	45	12.6349
:::::::::	chrM:12661-12887(+)$1	226	40	49	11.4444
a]eeeee00	chr2:190339931-190340257(+)$1	326	76	85	12.1587
Fffffff$$	chr7:91623834-91624063(+)$1	229	27	36	11.9999
:::::::::	chr21:40571099-40571412(-)$1	313	98	107	10.6507
22ffffff]	chrM:14203-14424(-)$1	221	123	132	11.0476
:::::::::	chrM:9850-10056(+)$1	206	24	33	11.6031
:::::::::	chrM:12513-12766(+)$1	253	83	92	10.5714
+++++++++	chr15:44063202-44063416(+)$1	214	117	126	12.2380
22ffffff]	chrM:14252-14487(-)$1	235	186	195	11.0476
c####gggg	chr7:91667875-91668120(+)$1	245	98	107	11.8412
ERRRRRRRR	chr5:72286241-72286543(+)$1	302	10	19	14.7777
eee[cccmm	chr21:34931479-34931768(+)$1	289	45	54	10.6507
:::EEEEE{	chr4:13605609-13605939(-)$1	330	70	79	10.9682
:::::::::	chrM:9856-10085(+)$1	229	216	225	15.4126
IIIIIIIII	chr16:8997030-8997358(-)$1	328	47	56	12.5555
KCCCNNNNN	chr12:122995555-122995760(-)$1	205	14	23	15.0952
:::::::::	chrM:9885-10090(+)$1	205	187	196	15.4126
nnnndddd]	chr7:26232052-26232297(-)$1	245	64	73	10.8888
::::fffff	chr8:53569110-53569406(-)$1	296	241	250	11.4444
d]eeeee::	chr8:30938619-30938886(+)$1	267	131	140	10.9682
:::::iiii	chrM:14416-14644(-)$1	228	101	110	11.1269
2eeeeeddd	chr7:72903449-72903686(-)$1	237	176	185	15.2539
::hhhhhhh	chr1:22033182-22033428(-)$1	246	50	59	11.0476
:::::iiii	chrM:14452-14671(-)$1	219	128	137	11.1269
DMMMMBB{F	chr14:61278600-61278930(+)$1	330	66	75	11.3650
:::gggggg	chr7:91708343-91708627(+)$1	284	39	48	11.2857
e::::::::	chr1:171526286-171526511(+)$1	225	80	89	15.8095
c$$$$$fff	chr17:34171000-34171235(+)$1	235	49	58	12.4761
ceeeeennn	chr2:55771958-55772236(+)$1	278	26	35	11.4444
:::::::::	chrM:9802-10037(+)$1	235	72	81	11.6031
:::::::::	chrM:12653-12861(+)$1	208	48	57	11.4444

#DB
((.......	chrM:12643-12853(+)$1	1	58	67	11.4444
.))))))).	chr7:91643462-91643696(+)$1	1	167	176	12.7142
))...)).)	chr7:158485905-158486185(-)$1	1	260	269	11.9206
(((..((((	chr7:27832583-27832810(+)$1	1	67	76	12.7142
..((((...	chr12:21789969-21790229(-)$1	1	88	97	15.8095
))))))).)	chr11:62284844-62285115(-)$1	1	59	68	10.8095
.........	chr14:56107746-56108026(+)$1	1	74	83	15.8095
)))))))))	chr11:62293185-62293427(-)$1	1	187	196	10.2539
...))))))	chr3:37368338-37368589(+)$1	1	155	164	10.8888
((((.....	chr21:38528976-38529280(+)$1	1	35	44	11.6825
.........	chrM:9842-10050(+)$1	1	32	41	11.6031
.........	chr4:68358489-68358789(-)$1	1	3	12	11.2857
)))))))))	chr3:169700848-169701142(+)$1	1	276	285	11.4444
.((((((((	chr12:46357788-46358061(-)$1	1	3	12	11.3650
..)))))..	chr11:62291603-62291812(-)$1	1	188	197	10.9682
)))))))))	chr10:70098796-70099029(+)$1	1	222	231	11.6031
(...(((((	chr1:165723364-165723613(-)$1	1	89	98	11.3650
))))))(((	chr20:32681408-32681637(-)$1	1	85	94	11.5238
)))))))).	chr7:91624922-91625176(+)$1	1	198	207	12.3174
...((((.(	chr13:98667721-98667996(+)$1	1	1	10	10.2539
)))))))))	chr11:3023120-3023367(-)$1	1	235	244	11.2063
((.((((((	chr7:26233143-26233355(-)$1	1	27	36	12.3968
((....(((	chr6:35837484-35837745(-)$1	1	164	173	10.9682
.........	chr6:87970248-87970555(+)$1	1	115	124	10.8888
.((((((..	chr5:33467644-33467905(+)$1	1	160	169	11.9206
((.......	chrM:12622-12843(+)$1	1	79	88	11.4444
..)))))).	chrM:14224-14452(-)$1	1	151	160	11.0476
.....((((	chrM:14367-14602(-)$1	1	59	68	11.1269
)))).....	chrM:9790-10002(+)$1	1	84	93	11.6031
......(((	chr8:101725257-101725496(-)$1	1	76	85	12.1587
((.((((((	chr7:26233155-26233376(-)$1	1	48	57	12.3968
))))).(((	chr1:220152740-220153016(-)$1	1	36	45	12.6349
.........	chrM:12661-12887(+)$1	1	40	49	11.4444
).)))))..	chr2:190339931-190340257(+)$1	1	76	85	12.1587
(((((((..	chr7:91623834-91624063(+)$1	1	27	36	11.9999
.........	chr21:40571099-40571412(-)$1	1	98	107	10.6507
..)))))).	chrM:14203-14424(-)$1	1	123	132	11.0476
.........	chrM:9850-10056(+)$1	1	24	33	11.6031
.........	chrM:12513-12766(+)$1	1	83	92	10.5714
.........	chr15:44063202-44063416(+)$1	1	117	126	12.2380
..)))))).	chrM:14252-14487(-)$1	1	186	195	11.0476
(....((((	chr7:91667875-91668120(+)$1	1	98	107	11.8412
(........	chr5:72286241-72286543(+)$1	1	10	19	14.7777
(((.(((..	chr21:34931479-34931768(+)$1	1	45	54	10.6507
...(((((.	chr4:13605609-13605939(-)$1	1	70	79	10.9682
.........	chrM:9856-10085(+)$1	1	216	225	15.4126
(((((((((	chr16:8997030-8997358(-)$1	1	47	56	12.5555
.(((.....	chr12:122995555-122995760(-)$1	1	14	23	15.0952
.........	chrM:9885-10090(+)$1	1	187	196	15.4126
....)))).	chr7:26232052-26232297(-)$1	1	64	73	10.8888
....(((((	chr8:53569110-53569406(-)$1	1	241	250	11.4444
).)))))..	chr8:30938619-30938886(+)$1	1	131	140	10.9682
.....((((	chrM:14416-14644(-)$1	1	101	110	11.1269
.))))))))	chr7:72903449-72903686(-)$1	1	176	185	15.2539
..(((((((	chr1:22033182-22033428(-)$1	1	50	59	11.0476
.....((((	chrM:14452-14671(-)$1	1	128	137	11.1269
(....((.(	chr14:61278600-61278930(+)$1	1	66	75	11.3650
...((((((	chr7:91708343-91708627(+)$1	1	39	48	11.2857
)........	chr1:171526286-171526511(+)$1	1	80	89	15.8095
(.....(((	chr17:34171000-34171235(+)$1	1	49	58	12.4761
((((((...	chr2:55771958-55772236(+)$1	1	26	35	11.4444
.........	chrM:9802-10037(+)$1	1	72	81	11.6031
.........	chrM:12653-12861(+)$1	1	48	57	11.4444

#PSSM
U : 0.80	G : 0.11	A : 0.07	
A : 0.73	U : 0.11	C : 0.07	G : 0.07	
A : 0.96	C : 0.01	U : 0.01	
U : 0.88	A : 0.06	G : 0.03	C : 0.01	
U : 0.90	A : 0.07	G : 0.01	
U : 0.92	C : 0.03	A : 0.03	G : 0.01	
U : 0.90	A : 0.06	C : 0.01	G : 0.01	
U : 0.34	A : 0.28	G : 0.22	C : 0.14	
U : 0.28	C : 0.26	A : 0.26	G : 0.17	

#score	754.3333333333322
#seq	63
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_transcript_m3_run2.nuc.txt

#NT
UUUAUGCUAAG	chr5:145189324-145189732(-)$1	408	365	376	14.2765
uuuaugcuacu	chr2:175100720-175100974(-)$1	254	0	11	15.8723
UUUGUUUUAAU	chr14:31064410-31064673(+)$1	263	100	111	17.6808
UAUAUACUAAU	chr6:7890780-7891112(-)$1	332	210	221	14.4893
UGUAUUAUAUU	chrX:44894382-44894656(+)$1	274	114	125	13.1063
UUGAUUUUGAU	chr11:124665713-124666043(-)$1	330	120	131	15.0212
uuuauucuuuu	chr19:28281767-28282060(-)$1	293	33	44	17.1489
UUUAUAUUUAU	chr7:12398487-12398741(-)$1	254	149	160	16.0851
uugauuuuuau	chr20:3955076-3955324(-)$1	248	87	98	15.4468
UUUUUUGUAUU	chr11:112100868-112101153(+)$1	285	34	45	13.6382
UUUAUUUUAUU	chrX:154307051-154307320(+)$1	269	55	66	18.6382
uguaugcuaau	chr7:140576770-140577069(-)$1	299	167	178	14.3829
uuuauuaugau	chr18:70918991-70919268(-)$1	277	72	83	18.0000
UUUAUUGAAAU	chr8:68061848-68062102(+)$1	254	134	145	16.2978
uuuauaauaau	chr1:44226896-44227247(+)$1	351	257	268	17.0425
UUUAUUUGACU	chr4:16220382-16220714(-)$1	332	42	53	14.5957
UUUAUUUUAGU	chr2:86705377-86705628(+)$1	251	101	112	18.6382
UUUUUUCUACU	chr1:93675548-93675816(+)$1	268	165	176	15.7659
UUUAAUCUAAG	chr5:10262790-10263060(+)$1	270	66	77	13.5319
uuuauucugcu	chr1:167916901-167917166(+)$1	265	42	53	16.9361
guuauacuaau	chr18:44675382-44675785(-)$1	403	208	219	14.8085
UUUAUUAUGAA	chr7:103002677-103002956(+)$1	279	65	76	13.4255
uuuagucuacu	chr13:46590339-46590718(-)$1	379	230	241	15.1276
AUUAUUCAAAU	chr8:130915288-130915562(-)$1	274	29	40	14.0638
UUUAUUCUAGU	chr18:67842486-67842847(-)$1	361	312	323	19.2765
uuaauucuuau	chr20:33009793-33010052(+)$1	259	158	169	16.0851
uuuauuauuau	chr1:19515402-19515649(-)$1	247	171	182	18.4255
uuuauucuugu	chr3:142283354-142283627(-)$1	273	214	225	17.1489
uauauuuuaau	chr15:60767310-60767571(-)$1	261	9	20	17.3617
uuuauuuuuau	chr2:187498284-187498556(+)$1	272	93	104	19.5957
CUUAUUCUAAU	chr12:111947437-111947731(-)$1	294	217	228	18.1063
AUUAUUCUUAU	chr11:46784685-46785000(-)$1	315	229	240	16.0851
uuuuuuuuaau	chr12:69216146-69216437(+)$1	291	46	57	17.9999
GUUAUUUUUAU	chr5:70795630-70795885(+)$1	255	137	148	15.5531
UUUAGACUAAU	chr12:107395902-107396213(-)$1	311	172	183	14.4893
UUCAUUUUAGU	chr18:211193-211457(+)$1	264	93	104	14.4893
UUUAUUUGUAU	chr7:16298687-16298983(-)$1	296	43	54	15.3404
uuuaaucugau	chr22:17268791-17269059(-)$1	268	201	212	15.4468
UUUAUUGUGAU	chr10:28907776-28908003(+)$1	227	68	79	17.8936
UUUAUGGUAAU	chr7:32919543-32919816(-)$1	273	137	148	16.8297
GUAAUUCUAAU	chr1:146744034-146744345(+)$1	311	131	142	14.1702
uuuauucuaau	chr8:93884974-93885229(-)$1	255	173	184	22.3617
UUUGUUCAAAU	chr11:28153034-28153325(+)$1	291	224	235	14.1702
UUUUUUUUAAU	chr8:21828954-21829248(+)$1	294	192	203	17.9999
UUUUUUUUAAU	chr4:119624776-119625061(+)$1	285	229	240	17.9999
UUUAUUUUACU	chr7:120595855-120596189(+)$1	334	104	115	18.8510

#otherMatches

#Struct PSSM
>>>>>>>>>>>	chr10:121352767-121353028(-)$1	261	202	213	15.1276
hhhhhnnnnnh	chr5:145189324-145189732(-)$1	408	365	376	14.2765
:EEEEE{BB{F	chr2:175100720-175100974(-)$1	254	0	11	15.8723
gg"""dddd[e	chr14:31064410-31064673(+)$1	263	100	111	17.6808
gg^^^^^^^^^	chr6:7890780-7891112(-)$1	332	210	221	14.4893
e[cccoooooo	chrX:44894382-44894656(+)$1	274	114	125	13.1063
22ffffff]gg	chr11:124665713-124666043(-)$1	330	120	131	15.0212
:::::::::::	chr19:28281767-28282060(-)$1	293	33	44	17.1489
yyyyyyyyyyy	chr7:12398487-12398741(-)$1	254	149	160	16.0851
]dddd]fffff	chr20:3955076-3955324(-)$1	248	87	98	15.4468
==========&	chr11:112100868-112101153(+)$1	285	34	45	13.6382
c[cccoooooo	chrX:154307051-154307320(+)$1	269	55	66	18.6382
===========	chr7:140576770-140577069(-)$1	299	167	178	14.3829
e[cccmmmmcc	chr18:70918991-70919268(-)$1	277	72	83	18.0000
===]hhhhhhh	chr8:68061848-68062102(+)$1	254	134	145	16.2978
FFFFFF~~~~E	chr1:44226896-44227247(+)$1	351	257	268	17.0425
KHHHHHHHHLL	chr4:16220382-16220714(-)$1	332	42	53	14.5957
nnnnngggggg	chr2:86705377-86705628(+)$1	251	101	112	18.6382
qqeeeeeffff	chr1:93675548-93675816(+)$1	268	165	176	15.7659
!eeeeemmmme	chr5:10262790-10263060(+)$1	270	66	77	13.5319
c%%%%%%dddd	chr1:167916901-167917166(+)$1	265	42	53	16.9361
b[eeeee!!dd	chr18:44675382-44675785(-)$1	403	208	219	14.8085
cc[ccc[gggg	chr7:103002677-103002956(+)$1	279	65	76	13.4255
eeeeee:JJJJ	chr13:46590339-46590718(-)$1	379	230	241	15.1276
fff[ddddqqq	chr8:130915288-130915562(-)$1	274	29	40	14.0638
qqqqqqggggg	chr18:67842486-67842847(-)$1	361	312	323	19.2765
EEEYYFFFFFF	chr20:33009793-33010052(+)$1	259	158	169	16.0851
^^eeeee8888	chr1:19515402-19515649(-)$1	247	171	182	18.4255
:hhhhhhhh%%	chr3:142283354-142283627(-)$1	273	214	225	17.1489
E:::::::::c	chr15:60767310-60767571(-)$1	261	9	20	17.3617
]iiiiiiiii2	chr2:187498284-187498556(+)$1	272	93	104	19.5957
:::eeeee!!b	chr12:111947437-111947731(-)$1	294	217	228	18.1063
ssssseeeeed	chr11:46784685-46785000(-)$1	315	229	240	16.0851
:::::::::::	chr12:69216146-69216437(+)$1	291	46	57	17.9999
ff::ffffffo	chr5:70795630-70795885(+)$1	255	137	148	15.5531
ggggccc++++	chr12:107395902-107396213(-)$1	311	172	183	14.4893
hhhhhhhhddd	chr18:211193-211457(+)$1	264	93	104	14.4893
gggggggnnnn	chr7:16298687-16298983(-)$1	296	43	54	15.3404
epppppppeee	chr22:17268791-17269059(-)$1	268	201	212	15.4468
88888bb]eee	chr10:28907776-28908003(+)$1	227	68	79	17.8936
d"""cccoooo	chr7:32919543-32919816(-)$1	273	137	148	16.8297
fffrrrrrrrr	chr1:146744034-146744345(+)$1	311	131	142	14.1702
iiccc!!ccc[	chr8:93884974-93885229(-)$1	255	173	184	22.3617
IIIII::ffff	chr11:28153034-28153325(+)$1	291	224	235	14.1702
iiiiiqqqqqq	chr8:21828954-21829248(+)$1	294	192	203	17.9999
88888888===	chr4:119624776-119625061(+)$1	285	229	240	17.9999
]ccc4444ddd	chr7:120595855-120596189(+)$1	334	104	115	18.8510

#DB
...........	chr10:121352767-121353028(-)$1	1	202	213	15.1276
(((((.....)	chr5:145189324-145189732(-)$1	1	365	376	14.2765
.(((((.((.(	chr2:175100720-175100974(-)$1	1	0	11	15.8723
((...((((.(	chr14:31064410-31064673(+)$1	1	100	111	17.6808
((.........	chr6:7890780-7891112(-)$1	1	210	221	14.4893
(.(((......	chrX:44894382-44894656(+)$1	1	114	125	13.1063
..)))))).))	chr11:124665713-124666043(-)$1	1	120	131	15.0212
...........	chr19:28281767-28282060(-)$1	1	33	44	17.1489
...........	chr7:12398487-12398741(-)$1	1	149	160	16.0851
.)))).)))))	chr20:3955076-3955324(-)$1	1	87	98	15.4468
((((((((((.	chr11:112100868-112101153(+)$1	1	34	45	13.6382
(.(((......	chrX:154307051-154307320(+)$1	1	55	66	18.6382
(((((((((((	chr7:140576770-140577069(-)$1	1	167	178	14.3829
(.(((....))	chr18:70918991-70919268(-)$1	1	72	83	18.0000
))).)))))))	chr8:68061848-68062102(+)$1	1	134	145	16.2978
))))))....)	chr1:44226896-44227247(+)$1	1	257	268	17.0425
.((((((((..	chr4:16220382-16220714(-)$1	1	42	53	14.5957
.....))))))	chr2:86705377-86705628(+)$1	1	101	112	18.6382
..)))))((((	chr1:93675548-93675816(+)$1	1	165	176	15.7659
.(((((....)	chr5:10262790-10263060(+)$1	1	66	77	13.5319
(......((((	chr1:167916901-167917166(+)$1	1	42	53	16.9361
(.(((((..((	chr18:44675382-44675785(-)$1	1	208	219	14.8085
((.(((.((((	chr7:103002677-103002956(+)$1	1	65	76	13.4255
)))))).))))	chr13:46590339-46590718(-)$1	1	230	241	15.1276
(((.((((...	chr8:130915288-130915562(-)$1	1	29	40	14.0638
......)))))	chr18:67842486-67842847(-)$1	1	312	323	19.2765
)))..))))))	chr20:33009793-33010052(+)$1	1	158	169	16.0851
..)))))....	chr1:19515402-19515649(-)$1	1	171	182	18.4255
.((((((((..	chr3:142283354-142283627(-)$1	1	214	225	17.1489
(.........(	chr15:60767310-60767571(-)$1	1	9	20	17.3617
.))))))))).	chr2:187498284-187498556(+)$1	1	93	104	19.5957
...(((((..(	chr12:111947437-111947731(-)$1	1	217	228	18.1063
.....))))))	chr11:46784685-46785000(-)$1	1	229	240	16.0851
...........	chr12:69216146-69216437(+)$1	1	46	57	17.9999
))..((((((.	chr5:70795630-70795885(+)$1	1	137	148	15.5531
(((((((....	chr12:107395902-107396213(-)$1	1	172	183	14.4893
))))))))(((	chr18:211193-211457(+)$1	1	93	104	14.4893
(((((((....	chr7:16298687-16298983(-)$1	1	43	54	15.3404
(.......)))	chr22:17268791-17269059(-)$1	1	201	212	15.4468
.....)).)))	chr10:28907776-28908003(+)$1	1	68	79	17.8936
(...(((....	chr7:32919543-32919816(-)$1	1	137	148	16.8297
(((........	chr1:146744034-146744345(+)$1	1	131	142	14.1702
(((((..(((.	chr8:93884974-93885229(-)$1	1	173	184	22.3617
)))))..((((	chr11:28153034-28153325(+)$1	1	224	235	14.1702
(((((......	chr8:21828954-21829248(+)$1	1	192	203	17.9999
........)))	chr4:119624776-119625061(+)$1	1	229	240	17.9999
.)))....)))	chr7:120595855-120596189(+)$1	1	104	115	18.8510

#PSSM
U : 0.53	u : 0.34	A : 0.04	G : 0.04	g : 0.02	C : 0.02	
U : 0.59	u : 0.31	A : 0.02	G : 0.02	g : 0.02	a : 0.02	
U : 0.55	u : 0.31	C : 0.04	G : 0.02	g : 0.02	a : 0.02	A : 0.02	
A : 0.51	a : 0.34	U : 0.08	G : 0.04	u : 0.02	
U : 0.59	u : 0.31	A : 0.02	g : 0.02	G : 0.02	a : 0.02	
U : 0.53	u : 0.27	A : 0.06	G : 0.04	g : 0.04	a : 0.04	
C : 0.25	U : 0.25	c : 0.21	u : 0.08	G : 0.08	a : 0.06	A : 0.04	
U : 0.53	u : 0.36	A : 0.06	G : 0.04	
A : 0.46	a : 0.17	u : 0.12	U : 0.08	G : 0.06	g : 0.06	C : 0.02	
A : 0.44	a : 0.25	c : 0.06	U : 0.06	C : 0.06	G : 0.06	u : 0.02	g : 0.02	
U : 0.57	u : 0.36	G : 0.04	A : 0.02	

#score	764.8297872340422
#seq	47
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_UTR_m2_run2.nuc.txt

#NT
UGAAGAA	chr12:76449835-76450042(-)$1	207	145	152	20.2857
UGAAGAA	chrX:70685408-70685772(+)$1	364	160	167	20.2857
UGAAGAA	chr7:23561606-23561873(-)$1	267	50	57	20.2857
UGAAGAA	chr13:27640263-27640557(-)$1	294	209	216	20.2857
UGAAGAA	chr1:76260259-76260530(+)$1	271	27	34	20.2857
UGUAGAA	chr11:47487586-47487916(-)$1	330	121	128	16.7142
UGAAGAA	chr6:24785823-24786170(+)$1	347	101	108	20.2857
ugaagaa	chr19:14199936-14200224(-)$1	288	112	119	20.2857
ugaagaa	chr2:29169490-29169765(+)$1	275	61	68	20.2857
UGAAGAA	chr3:142751524-142751773(+)$1	249	200	207	20.2857
UGAAGAA	chr12:76443462-76443665(-)$1	203	105	112	20.2857
UGAAGAA	chr7:106840508-106840836(+)$1	328	134	141	20.2857
UGAAGAA	chr2:187364803-187365102(+)$1	299	133	140	20.2857
UGAAGAA	chr15:40488782-40489075(+)$1	293	140	147	20.2857
ugaagaa	chr8:124381990-124382291(-)$1	301	145	152	20.2857
UGAAGAA	chr6:18236587-18236834(-)$1	247	51	58	20.2857
UGUAGAA	chr8:117861137-117861371(-)$1	234	38	45	16.7142
UGAAGAA	chr12:76453476-76453688(-)$1	212	92	99	20.2857
UGAAGAA	chr2:187359933-187360161(+)$1	228	42	49	20.2857
UGAAGAA	chr10:70532661-70532958(+)$1	297	127	134	20.2857
UGUAGAA	chr19:19101610-19101880(-)$1	270	250	257	16.7142
UGAAGAA	chr15:69072697-69072912(-)$1	215	105	112	20.2857
UGAAGAA	chr1:90493018-90493347(+)$1	329	229	236	20.2857
UGUAGAA	chr9:72324374-72324659(-)$1	285	140	147	16.7142
UGAAGAA	chr7:155574006-155574265(+)$1	259	30	37	20.2857
UGAAGAA	chr2:187364903-187365120(+)$1	217	33	40	20.2857
UGAAGAA	chr1:76260167-76260452(+)$1	285	119	126	20.2857
UGAAGAA	chr2:187365898-187366145(+)$1	247	237	244	20.2857
ugaagaa	chr19:14200024-14200274(-)$1	250	162	169	20.2857
UGAAGAA	chr12:46357788-46358045(-)$1	257	96	103	20.2857
UGAAGAA	chr15:59205601-59205988(-)$1	387	155	162	20.2857
UGAAGAA	chr12:76449711-76449942(-)$1	231	45	52	20.2857
ugaagaa	chr15:76226659-76226934(+)$1	275	7	14	20.2857
ugaagaa	chr13:31035379-31035665(-)$1	286	129	136	20.2857
UGUAGAA	chrX:150577611-150577935(+)$1	324	308	315	16.7142
UGAAGAA	chr17:73664500-73664813(+)$1	313	171	178	20.2857
ugaagaa	chr1:6283731-6283968(-)$1	237	79	86	20.2857
UGAAGAA	chr3:142757634-142757893(+)$1	259	138	145	20.2857
UGAAGAA	chr4:6709697-6710060(-)$1	363	112	119	20.2857
UGAAGAA	chr20:60711811-60712107(-)$1	296	113	120	20.2857
Ugaagaa	chr14:102551117-102551354(-)$1	237	60	67	20.2857

#otherMatches

#Struct PSSM
DDD{BBK	chr3:184428330-184428629(-)$1	299	35	42	16.7142
ggggg::	chr12:76449835-76450042(-)$1	207	145	152	20.2857
GKKDDDD	chrX:70685408-70685772(+)$1	364	160	167	20.2857
f333fff	chr7:23561606-23561873(-)$1	267	50	57	20.2857
ffff!!f	chr13:27640263-27640557(-)$1	294	209	216	20.2857
fffffnn	chr1:76260259-76260530(+)$1	271	27	34	20.2857
ffffooo	chr11:47487586-47487916(-)$1	330	121	128	16.7142
fff9999	chr6:24785823-24786170(+)$1	347	101	108	20.2857
:::::::	chr19:14199936-14200224(-)$1	288	112	119	20.2857
:::::::	chr2:29169490-29169765(+)$1	275	61	68	20.2857
ffooooo	chr3:142751524-142751773(+)$1	249	200	207	20.2857
bb]ffff	chr12:76443462-76443665(-)$1	203	105	112	20.2857
hhhh666	chr7:106840508-106840836(+)$1	328	134	141	20.2857
@@@@@@@	chr2:187364803-187365102(+)$1	299	133	140	20.2857
H||||||	chr15:40488782-40489075(+)$1	293	140	147	20.2857
{FFFFFF	chr8:124381990-124382291(-)$1	301	145	152	20.2857
cc[bbpp	chr6:18236587-18236834(-)$1	247	51	58	20.2857
DD:::::	chr8:117861137-117861371(-)$1	234	38	45	16.7142
annnnna	chr12:76453476-76453688(-)$1	212	92	99	20.2857
e55555c	chr2:187359933-187360161(+)$1	228	42	49	20.2857
OOOOOOB	chr10:70532661-70532958(+)$1	297	127	134	20.2857
DD?????	chr19:19101610-19101880(-)$1	270	250	257	16.7142
]dddd>>	chr15:69072697-69072912(-)$1	215	105	112	20.2857
dd:::::	chr1:90493018-90493347(+)$1	329	229	236	20.2857
hhhhlll	chr9:72324374-72324659(-)$1	285	140	147	16.7142
ffffff2	chr7:155574006-155574265(+)$1	259	30	37	20.2857
:::::::	chr2:187364903-187365120(+)$1	217	33	40	20.2857
fffffnn	chr1:76260167-76260452(+)$1	285	119	126	20.2857
FFFF:::	chr2:187365898-187366145(+)$1	247	237	244	20.2857
:::::::	chr19:14200024-14200274(-)$1	250	162	169	20.2857
d55555c	chr12:46357788-46358045(-)$1	257	96	103	20.2857
mmmbb22	chr15:59205601-59205988(-)$1	387	155	162	20.2857
e!!bb$$	chr12:76449711-76449942(-)$1	231	45	52	20.2857
IIIIIII	chr15:76226659-76226934(+)$1	275	7	14	20.2857
ee####f	chr13:31035379-31035665(-)$1	286	129	136	20.2857
hhhhhhh	chrX:150577611-150577935(+)$1	324	308	315	16.7142
YYFFFFF	chr17:73664500-73664813(+)$1	313	171	178	20.2857
dnnnnnd	chr1:6283731-6283968(-)$1	237	79	86	20.2857
4dddd::	chr3:142757634-142757893(+)$1	259	138	145	20.2857
ee:iiii	chr4:6709697-6710060(-)$1	363	112	119	20.2857
b[bbmmm	chr20:60711811-60712107(-)$1	296	113	120	20.2857
c55555=	chr14:102551117-102551354(-)$1	237	60	67	20.2857

#DB
(((.((.	chr3:184428330-184428629(-)$1	1	35	42	16.7142
)))))..	chr12:76449835-76450042(-)$1	1	145	152	20.2857
(..((((	chrX:70685408-70685772(+)$1	1	160	167	20.2857
)...)))	chr7:23561606-23561873(-)$1	1	50	57	20.2857
((((..(	chr13:27640263-27640557(-)$1	1	209	216	20.2857
(((((..	chr1:76260259-76260530(+)$1	1	27	34	20.2857
((((...	chr11:47487586-47487916(-)$1	1	121	128	16.7142
)))....	chr6:24785823-24786170(+)$1	1	101	108	20.2857
.......	chr19:14199936-14200224(-)$1	1	112	119	20.2857
.......	chr2:29169490-29169765(+)$1	1	61	68	20.2857
((.....	chr3:142751524-142751773(+)$1	1	200	207	20.2857
)).))))	chr12:76443462-76443665(-)$1	1	105	112	20.2857
))))...	chr7:106840508-106840836(+)$1	1	134	141	20.2857
.......	chr2:187364803-187365102(+)$1	1	133	140	20.2857
)......	chr15:40488782-40489075(+)$1	1	140	147	20.2857
.((((((	chr8:124381990-124382291(-)$1	1	145	152	20.2857
((.((..	chr6:18236587-18236834(-)$1	1	51	58	20.2857
((.....	chr8:117861137-117861371(-)$1	1	38	45	16.7142
(.....)	chr12:76453476-76453688(-)$1	1	92	99	20.2857
).....)	chr2:187359933-187360161(+)$1	1	42	49	20.2857
......(	chr10:70532661-70532958(+)$1	1	127	134	20.2857
)).....	chr19:19101610-19101880(-)$1	1	250	257	16.7142
.))))..	chr15:69072697-69072912(-)$1	1	105	112	20.2857
)).....	chr1:90493018-90493347(+)$1	1	229	236	20.2857
((((...	chr9:72324374-72324659(-)$1	1	140	147	16.7142
)))))).	chr7:155574006-155574265(+)$1	1	30	37	20.2857
.......	chr2:187364903-187365120(+)$1	1	33	40	20.2857
(((((..	chr1:76260167-76260452(+)$1	1	119	126	20.2857
))))...	chr2:187365898-187366145(+)$1	1	237	244	20.2857
.......	chr19:14200024-14200274(-)$1	1	162	169	20.2857
).....)	chr12:46357788-46358045(-)$1	1	96	103	20.2857
...))..	chr15:59205601-59205988(-)$1	1	155	162	20.2857
(..((..	chr12:76449711-76449942(-)$1	1	45	52	20.2857
(((((((	chr15:76226659-76226934(+)$1	1	7	14	20.2857
((....(	chr13:31035379-31035665(-)$1	1	129	136	20.2857
)))))))	chrX:150577611-150577935(+)$1	1	308	315	16.7142
..)))))	chr17:73664500-73664813(+)$1	1	171	178	20.2857
(.....)	chr1:6283731-6283968(-)$1	1	79	86	20.2857
.))))..	chr3:142757634-142757893(+)$1	1	138	145	20.2857
)).((((	chr4:6709697-6710060(-)$1	1	112	119	20.2857
(.((...	chr20:60711811-60712107(-)$1	1	113	120	20.2857
).....)	chr14:102551117-102551354(-)$1	1	60	67	20.2857

#PSSM
U : 0.83	u : 0.16	
G : 0.80	g : 0.19	
A : 0.66	a : 0.19	U : 0.14	
A : 0.80	a : 0.19	
G : 0.80	g : 0.19	
A : 0.80	a : 0.19	
A : 0.80	a : 0.19	

#score	830.5714285714295
#seq	42
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_CDS_m3_run1.nuc.txt

#NT
UCCC	chr19:4542935-4543267(-)$1	332	60	64	11.9999
UCCC	chr19:1010695-1010957(-)$1	262	43	47	11.9999
UCCC	chr5:159492142-159492486(+)$1	344	65	69	11.9999
UCCC	chr6:42897236-42897514(+)$1	278	96	100	11.9999
UCCC	chr19:11033868-11034101(-)$1	233	99	103	11.9999
UCCC	chr16:31501534-31501800(-)$1	266	230	234	11.9999
UCCC	chr5:149361256-149361641(+)$1	385	89	93	11.9999
UCCC	chr16:29818027-29818264(+)$1	237	35	39	11.9999
UCCC	chr14:23389746-23390055(-)$1	309	32	36	11.9999
UCCC	chr19:16682953-16683301(-)$1	348	289	293	11.9999
UCCC	chr17:18874231-18874492(-)$1	261	11	15	11.9999
UCCC	chr1:150238384-150238663(-)$1	279	7	11	11.9999
UCCC	chr1:150238463-150238758(-)$1	295	64	68	11.9999
UCCC	chr1:9324403-9324653(+)$1	250	19	23	11.9999
UCCC	chr14:100069693-100069948(-)$1	255	177	181	11.9999
UCCC	chr7:134849260-134849503(+)$1	243	132	136	11.9999
UCCC	chr9:131584461-131584726(-)$1	265	103	107	11.9999
UCCC	chr16:28847542-28847799(+)$1	257	65	69	11.9999
UCCC	chr21:45565324-45565647(+)$1	323	21	25	11.9999
UCCC	chr16:31501747-31502037(-)$1	290	99	103	11.9999
UCCC	chr19:45323937-45324163(+)$1	226	15	19	11.9999
UCCC	chr3:13546069-13546303(+)$1	234	95	99	11.9999
uccc	chr6:30593415-30593727(+)$1	312	208	212	11.9999
UCCC	chrX:48761789-48762081(-)$1	292	18	22	11.9999
UCCC	chr16:66969266-66969533(+)$1	267	67	71	11.9999
UCCC	chr20:368648-368914(+)$1	266	39	43	11.9999
UCCC	chr16:633302-633599(+)$1	297	106	110	11.9999
UCCC	chr15:89173421-89173755(+)$1	334	118	122	11.9999
UCCC	chr12:117289517-117289823(+)$1	306	170	174	11.9999
UCCC	chr21:45879853-45880111(+)$1	258	32	36	11.9999
UCCC	chr16:75141528-75141799(+)$1	271	217	221	11.9999
UCCC	chr20:25281245-25281608(-)$1	363	168	172	11.9999
UCCC	chr19:1461045-1461339(-)$1	294	101	105	11.9999
UCCC	chr1:161199400-161199692(+)$1	292	30	34	11.9999
UCCC	chr9:137293379-137293679(+)$1	300	121	125	11.9999
UCCC	chr22:30824427-30824734(+)$1	307	12	16	11.9999
UCCC	chr20:49199135-49199447(+)$1	312	270	274	11.9999
UCCC	chr1:156219510-156219812(-)$1	302	77	81	11.9999
UCCC	chr22:30824575-30824891(+)$1	316	29	33	11.9999
UCCC	chr12:49223775-49224128(-)$1	353	3	7	11.9999
UCCC	chr19:40728141-40728502(-)$1	361	111	115	11.9999
UCCC	chr8:145539865-145540320(-)$1	455	220	224	11.9999
UCCC	chr2:27322554-27322820(+)$1	266	122	126	11.9999
UCCC	chr7:100276311-100276628(+)$1	317	195	199	11.9999
UCCC	chr19:1227575-1227871(+)$1	296	84	88	11.9999
UCCC	chr19:51301353-51301635(-)$1	282	139	143	11.9999
UCCC	chr17:78184585-78184843(-)$1	258	23	27	11.9999
UCCC	chr1:36769497-36769778(+)$1	281	269	273	11.9999
UCCC	chr21:46934833-46935078(-)$1	245	128	132	11.9999
UCCC	chr11:118472292-118472548(+)$1	256	80	84	11.9999
UCCC	chr20:306461-306762(+)$1	301	37	41	11.9999
UCCC	chr19:2271296-2271554(+)$1	258	97	101	11.9999
UCCC	chr16:2303714-2304028(-)$1	314	10	14	11.9999
UCCC	chr1:1288534-1288813(-)$1	279	74	78	11.9999
UCCC	chr11:65367027-65367341(-)$1	314	290	294	11.9999
uccc	chr17:36861797-36862083(+)$1	286	13	17	11.9999
UCCC	chr22:50713876-50714212(-)$1	336	178	182	11.9999
uccc	chr19:18279941-18280274(+)$1	333	320	324	11.9999
UCCC	chr17:80350172-80350413(-)$1	241	132	136	11.9999
UCCC	chr4:2930130-2930423(+)$1	293	45	49	11.9999
UCCC	chr9:140167246-140167541(+)$1	295	14	18	11.9999
UCCC	chr20:25207060-25207372(+)$1	312	16	20	11.9999
UCCC	chr16:30965153-30965458(+)$1	305	48	52	11.9999
UCCC	chr19:1089370-1089608(-)$1	238	190	194	11.9999
UCCC	chr19:42411237-42411601(+)$1	364	11	15	11.9999
uccc	chr19:2015530-2015797(-)$1	267	5	9	11.9999
UCCC	chr9:139958960-139959225(-)$1	265	229	233	11.9999
UCCC	chr17:38153948-38154238(+)$1	290	39	43	11.9999
UCCC	chr17:79826504-79826764(-)$1	260	70	74	11.9999
UCCC	chr16:29821370-29821647(+)$1	277	103	107	11.9999
UCCC	chr6:34212833-34213097(+)$1	264	13	17	11.9999
UCCC	chr12:122213522-122213837(+)$1	315	153	157	11.9999
UCCC	chr17:73314709-73314969(-)$1	260	117	121	11.9999
UCCC	chr16:57792587-57792891(-)$1	304	207	211	11.9999
UCCC	chr12:125262965-125263229(-)$1	264	173	177	11.9999
UCCC	chr14:21484879-21485202(-)$1	323	222	226	11.9999
UCCC	chr2:70676561-70676840(-)$1	279	146	150	11.9999
uccc	chr2:42990924-42991209(-)$1	285	36	40	11.9999
UCCC	chr22:41973064-41973392(-)$1	328	45	49	11.9999
UCCC	chr7:938328-938662(-)$1	334	28	32	11.9999
UCCC	chr7:4801989-4802269(+)$1	280	16	20	11.9999
UCCC	chr22:24125972-24126300(+)$1	328	54	58	11.9999
UCCC	chr8:145584547-145584883(+)$1	336	60	64	11.9999
UCCC	chr2:233740629-233740916(+)$1	287	132	136	11.9999
UCCC	chr7:5385199-5385542(-)$1	343	80	84	11.9999
UCCC	chr15:59428836-59429112(-)$1	276	38	42	11.9999
UCCC	chr1:15987024-15987292(+)$1	268	0	4	11.9999
UCCC	chr5:176524511-176524767(+)$1	256	7	11	11.9999
UCCC	chrX:152953965-152954283(+)$1	318	296	300	11.9999

#otherMatches

#Struct PSSM
C{BB	chr19:867906-868244(-)$1	338	92	96	11.9999
ffgg	chr19:4542935-4543267(-)$1	332	60	64	11.9999
]ddd	chr19:1010695-1010957(-)$1	262	43	47	11.9999
d555	chr5:159492142-159492486(+)$1	344	65	69	11.9999
FFFF	chr6:42897236-42897514(+)$1	278	96	100	11.9999
c:::	chr19:11033868-11034101(-)$1	233	99	103	11.9999
dddd	chr16:31501534-31501800(-)$1	266	230	234	11.9999
::::	chr5:149361256-149361641(+)$1	385	89	93	11.9999
KKCC	chr16:29818027-29818264(+)$1	237	35	39	11.9999
J:==	chr14:23389746-23390055(-)$1	309	32	36	11.9999
HHAF	chr19:16682953-16683301(-)$1	348	289	293	11.9999
GCCC	chr17:18874231-18874492(-)$1	261	11	15	11.9999
:::D	chr1:150238384-150238663(-)$1	279	7	11	11.9999
22ff	chr1:150238463-150238758(-)$1	295	64	68	11.9999
dd::	chr1:9324403-9324653(+)$1	250	19	23	11.9999
hhhh	chr14:100069693-100069948(-)$1	255	177	181	11.9999
ddda	chr7:134849260-134849503(+)$1	243	132	136	11.9999
NNNN	chr9:131584461-131584726(-)$1	265	103	107	11.9999
dddm	chr16:28847542-28847799(+)$1	257	65	69	11.9999
ssss	chr21:45565324-45565647(+)$1	323	21	25	11.9999
ggcc	chr16:31501747-31502037(-)$1	290	99	103	11.9999
%%%%	chr19:45323937-45324163(+)$1	226	15	19	11.9999
qqqq	chr3:13546069-13546303(+)$1	234	95	99	11.9999
ffff	chr6:30593415-30593727(+)$1	312	208	212	11.9999
::::	chrX:48761789-48762081(-)$1	292	18	22	11.9999
ddd]	chr16:66969266-66969533(+)$1	267	67	71	11.9999
gg[c	chr20:368648-368914(+)$1	266	39	43	11.9999
:::f	chr16:633302-633599(+)$1	297	106	110	11.9999
gggg	chr15:89173421-89173755(+)$1	334	118	122	11.9999
hhhh	chr12:117289517-117289823(+)$1	306	170	174	11.9999
::::	chr21:45879853-45880111(+)$1	258	32	36	11.9999
FF::	chr16:75141528-75141799(+)$1	271	217	221	11.9999
CCCH	chr20:25281245-25281608(-)$1	363	168	172	11.9999
rrre	chr19:1461045-1461339(-)$1	294	101	105	11.9999
xxxx	chr1:161199400-161199692(+)$1	292	30	34	11.9999
rrrr	chr9:137293379-137293679(+)$1	300	121	125	11.9999
GGGG	chr22:30824427-30824734(+)$1	307	12	16	11.9999
:FFF	chr20:49199135-49199447(+)$1	312	270	274	11.9999
vvvv	chr1:156219510-156219812(-)$1	302	77	81	11.9999
llbb	chr22:30824575-30824891(+)$1	316	29	33	11.9999
cccc	chr12:49223775-49224128(-)$1	353	3	7	11.9999
&&&c	chr19:40728141-40728502(-)$1	361	111	115	11.9999
eeee	chr8:145539865-145540320(-)$1	455	220	224	11.9999
FFFF	chr2:27322554-27322820(+)$1	266	122	126	11.9999
pphh	chr7:100276311-100276628(+)$1	317	195	199	11.9999
DDD{	chr19:1227575-1227871(+)$1	296	84	88	11.9999
hhhh	chr19:51301353-51301635(-)$1	282	139	143	11.9999
dwww	chr17:78184585-78184843(-)$1	258	23	27	11.9999
333c	chr1:36769497-36769778(+)$1	281	269	273	11.9999
=:::	chr21:46934833-46935078(-)$1	245	128	132	11.9999
iiii	chr11:118472292-118472548(+)$1	256	80	84	11.9999
gg!!	chr20:306461-306762(+)$1	301	37	41	11.9999
lddd	chr19:2271296-2271554(+)$1	258	97	101	11.9999
::::	chr16:2303714-2304028(-)$1	314	10	14	11.9999
::CC	chr1:1288534-1288813(-)$1	279	74	78	11.9999
leee	chr11:65367027-65367341(-)$1	314	290	294	11.9999
{A{A	chr17:36861797-36862083(+)$1	286	13	17	11.9999
::::	chr22:50713876-50714212(-)$1	336	178	182	11.9999
GG??	chr19:18279941-18280274(+)$1	333	320	324	11.9999
dd]b	chr17:80350172-80350413(-)$1	241	132	136	11.9999
DDA{	chr4:2930130-2930423(+)$1	293	45	49	11.9999
::ff	chr9:140167246-140167541(+)$1	295	14	18	11.9999
:::f	chr20:25207060-25207372(+)$1	312	16	20	11.9999
JJJJ	chr16:30965153-30965458(+)$1	305	48	52	11.9999
]ddd	chr19:1089370-1089608(-)$1	238	190	194	11.9999
JJJJ	chr19:42411237-42411601(+)$1	364	11	15	11.9999
::::	chr19:2015530-2015797(-)$1	267	5	9	11.9999
EYYA	chr9:139958960-139959225(-)$1	265	229	233	11.9999
fff:	chr17:38153948-38154238(+)$1	290	39	43	11.9999
bqqq	chr17:79826504-79826764(-)$1	260	70	74	11.9999
GGGc	chr16:29821370-29821647(+)$1	277	103	107	11.9999
::::	chr6:34212833-34213097(+)$1	264	13	17	11.9999
e"""	chr12:122213522-122213837(+)$1	315	153	157	11.9999
ccmm	chr17:73314709-73314969(-)$1	260	117	121	11.9999
::::	chr16:57792587-57792891(-)$1	304	207	211	11.9999
DD::	chr12:125262965-125263229(-)$1	264	173	177	11.9999
GGGG	chr14:21484879-21485202(-)$1	323	222	226	11.9999
rccc	chr2:70676561-70676840(-)$1	279	146	150	11.9999
^^^^	chr2:42990924-42991209(-)$1	285	36	40	11.9999
fffb	chr22:41973064-41973392(-)$1	328	45	49	11.9999
{BB{	chr7:938328-938662(-)$1	334	28	32	11.9999
DKKJ	chr7:4801989-4802269(+)$1	280	16	20	11.9999
Geee	chr22:24125972-24126300(+)$1	328	54	58	11.9999
++++	chr8:145584547-145584883(+)$1	336	60	64	11.9999
ffff	chr2:233740629-233740916(+)$1	287	132	136	11.9999
ddd[	chr7:5385199-5385542(-)$1	343	80	84	11.9999
#ccc	chr15:59428836-59429112(-)$1	276	38	42	11.9999
::::	chr1:15987024-15987292(+)$1	268	0	4	11.9999
gggg	chr5:176524511-176524767(+)$1	256	7	11	11.9999
tttt	chrX:152953965-152954283(+)$1	318	296	300	11.9999

#DB
(.((	chr19:867906-868244(-)$1	1	92	96	11.9999
))))	chr19:4542935-4543267(-)$1	1	60	64	11.9999
.)))	chr19:1010695-1010957(-)$1	1	43	47	11.9999
)...	chr5:159492142-159492486(+)$1	1	65	69	11.9999
))))	chr6:42897236-42897514(+)$1	1	96	100	11.9999
)...	chr19:11033868-11034101(-)$1	1	99	103	11.9999
))))	chr16:31501534-31501800(-)$1	1	230	234	11.9999
....	chr5:149361256-149361641(+)$1	1	89	93	11.9999
..((	chr16:29818027-29818264(+)$1	1	35	39	11.9999
(.((	chr14:23389746-23390055(-)$1	1	32	36	11.9999
))))	chr19:16682953-16683301(-)$1	1	289	293	11.9999
((((	chr17:18874231-18874492(-)$1	1	11	15	11.9999
...(	chr1:150238384-150238663(-)$1	1	7	11	11.9999
..))	chr1:150238463-150238758(-)$1	1	64	68	11.9999
))..	chr1:9324403-9324653(+)$1	1	19	23	11.9999
))))	chr14:100069693-100069948(-)$1	1	177	181	11.9999
))))	chr7:134849260-134849503(+)$1	1	132	136	11.9999
....	chr9:131584461-131584726(-)$1	1	103	107	11.9999
(((.	chr16:28847542-28847799(+)$1	1	65	69	11.9999
....	chr21:45565324-45565647(+)$1	1	21	25	11.9999
))))	chr16:31501747-31502037(-)$1	1	99	103	11.9999
....	chr19:45323937-45324163(+)$1	1	15	19	11.9999
....	chr3:13546069-13546303(+)$1	1	95	99	11.9999
((((	chr6:30593415-30593727(+)$1	1	208	212	11.9999
....	chrX:48761789-48762081(-)$1	1	18	22	11.9999
))).	chr16:66969266-66969533(+)$1	1	67	71	11.9999
((.(	chr20:368648-368914(+)$1	1	39	43	11.9999
...(	chr16:633302-633599(+)$1	1	106	110	11.9999
))))	chr15:89173421-89173755(+)$1	1	118	122	11.9999
))))	chr12:117289517-117289823(+)$1	1	170	174	11.9999
....	chr21:45879853-45880111(+)$1	1	32	36	11.9999
((..	chr16:75141528-75141799(+)$1	1	217	221	11.9999
((((	chr20:25281245-25281608(-)$1	1	168	172	11.9999
...)	chr19:1461045-1461339(-)$1	1	101	105	11.9999
....	chr1:161199400-161199692(+)$1	1	30	34	11.9999
....	chr9:137293379-137293679(+)$1	1	121	125	11.9999
((((	chr22:30824427-30824734(+)$1	1	12	16	11.9999
.)))	chr20:49199135-49199447(+)$1	1	270	274	11.9999
....	chr1:156219510-156219812(-)$1	1	77	81	11.9999
..))	chr22:30824575-30824891(+)$1	1	29	33	11.9999
((((	chr12:49223775-49224128(-)$1	1	3	7	11.9999
...(	chr19:40728141-40728502(-)$1	1	111	115	11.9999
((((	chr8:145539865-145540320(-)$1	1	220	224	11.9999
((((	chr2:27322554-27322820(+)$1	1	122	126	11.9999
..))	chr7:100276311-100276628(+)$1	1	195	199	11.9999
(((.	chr19:1227575-1227871(+)$1	1	84	88	11.9999
))))	chr19:51301353-51301635(-)$1	1	139	143	11.9999
(...	chr17:78184585-78184843(-)$1	1	23	27	11.9999
...)	chr1:36769497-36769778(+)$1	1	269	273	11.9999
)...	chr21:46934833-46935078(-)$1	1	128	132	11.9999
))))	chr11:118472292-118472548(+)$1	1	80	84	11.9999
((..	chr20:306461-306762(+)$1	1	37	41	11.9999
.)))	chr19:2271296-2271554(+)$1	1	97	101	11.9999
....	chr16:2303714-2304028(-)$1	1	10	14	11.9999
..((	chr1:1288534-1288813(-)$1	1	74	78	11.9999
.)))	chr11:65367027-65367341(-)$1	1	290	294	11.9999
.(.(	chr17:36861797-36862083(+)$1	1	13	17	11.9999
....	chr22:50713876-50714212(-)$1	1	178	182	11.9999
))..	chr19:18279941-18280274(+)$1	1	320	324	11.9999
)).)	chr17:80350172-80350413(-)$1	1	132	136	11.9999
(((.	chr4:2930130-2930423(+)$1	1	45	49	11.9999
..((	chr9:140167246-140167541(+)$1	1	14	18	11.9999
...(	chr20:25207060-25207372(+)$1	1	16	20	11.9999
((((	chr16:30965153-30965458(+)$1	1	48	52	11.9999
.)))	chr19:1089370-1089608(-)$1	1	190	194	11.9999
((((	chr19:42411237-42411601(+)$1	1	11	15	11.9999
....	chr19:2015530-2015797(-)$1	1	5	9	11.9999
)..)	chr9:139958960-139959225(-)$1	1	229	233	11.9999
))).	chr17:38153948-38154238(+)$1	1	39	43	11.9999
(...	chr17:79826504-79826764(-)$1	1	70	74	11.9999
((((	chr16:29821370-29821647(+)$1	1	103	107	11.9999
....	chr6:34212833-34213097(+)$1	1	13	17	11.9999
(...	chr12:122213522-122213837(+)$1	1	153	157	11.9999
((..	chr17:73314709-73314969(-)$1	1	117	121	11.9999
....	chr16:57792587-57792891(-)$1	1	207	211	11.9999
))..	chr12:125262965-125263229(-)$1	1	173	177	11.9999
))))	chr14:21484879-21485202(-)$1	1	222	226	11.9999
.)))	chr2:70676561-70676840(-)$1	1	146	150	11.9999
....	chr2:42990924-42991209(-)$1	1	36	40	11.9999
)))(	chr22:41973064-41973392(-)$1	1	45	49	11.9999
.((.	chr7:938328-938662(-)$1	1	28	32	11.9999
(..(	chr7:4801989-4802269(+)$1	1	16	20	11.9999
((((	chr22:24125972-24126300(+)$1	1	54	58	11.9999
....	chr8:145584547-145584883(+)$1	1	60	64	11.9999
((((	chr2:233740629-233740916(+)$1	1	132	136	11.9999
(((.	chr7:5385199-5385542(-)$1	1	80	84	11.9999
.(((	chr15:59428836-59429112(-)$1	1	38	42	11.9999
....	chr1:15987024-15987292(+)$1	1	0	4	11.9999
((((	chr5:176524511-176524767(+)$1	1	7	11	11.9999
....	chrX:152953965-152954283(+)$1	1	296	300	11.9999

#PSSM
U : 0.94	u : 0.05	
C : 0.94	c : 0.05	
C : 0.94	c : 0.05	
C : 0.94	c : 0.05	

#score	1079.9999999999995
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_CDS_m1_run1.nuc.txt

#NT
UAUACUAAUCUCCCUACAAAU	chrM:11024-11230(+)$1	206	26	47	30.5555
CAAACUAACCUCAAAACAAAU	chrM:8587-8796(+)$1	209	89	110	42.1111
CAAACUAACCUCAAAACAAAU	chrM:8613-8839(+)$1	226	63	84	42.1111
CAAACUAACCUCAAAACAAAU	chrM:8610-8813(+)$1	203	66	87	42.1111
CUUACUAACAUUAACGAAAAU	chrM:13604-13810(+)$1	206	50	71	34.5555
CAAAAUGACAUCAAAAAAAUC	chrM:13041-13255(+)$1	214	178	199	20.5555
CAAACUAACCUCAAAACAAAU	chrM:8559-8761(+)$1	202	117	138	42.1111
CUUACUAACAUUAACGAAAAU	chrM:13576-13779(+)$1	203	78	99	34.5555
UAUACUAAUCUCCCUACAAAU	chrM:10986-11193(+)$1	207	64	85	30.5555
CUUACUAACAUUAACGAAAAU	chrM:13610-13817(+)$1	207	44	65	34.5555
UAUACUAAUCUCCCUACAAAU	chrM:10873-11115(+)$1	242	177	198	30.5555
CCAACAAACUUAAAAUAAAAU	chrM:13697-13907(+)$1	210	162	183	27.0000
CUUACUAACAUUAACGAAAAU	chrM:13579-13785(+)$1	206	75	96	34.5555
CUUACUAACAUUAACGAAAAU	chrM:13595-13803(+)$1	208	59	80	34.5555
CAAACUAACCUCAAAACAAAU	chrM:8556-8759(+)$1	203	120	141	42.1111
CCAACAAACUUAAAAUAAAAU	chrM:13718-13925(+)$1	207	141	162	27.0000
CAAACUAACCUCAAAACAAAU	chrM:8574-8776(+)$1	202	102	123	42.1111
UAUACUAAUCUCCCUACAAAU	chrM:10993-11219(+)$1	226	57	78	30.5555
CAAACUAACCUCAAAACAAAU	chrM:8515-8756(+)$1	241	161	182	42.1111
CAAACUAACCUCAAAACAAAU	chrM:8569-8774(+)$1	205	107	128	42.1111
CUUACUAACAUUAACGAAAAU	chrM:13617-13832(+)$1	215	37	58	34.5555
CCAACAAACUUAAAAUAAAAU	chrM:13707-13918(+)$1	211	152	173	27.0000
UAUACUAAUCUCCCUACAAAU	chrM:11030-11234(+)$1	204	20	41	30.5555
CCAACAAACUUAAAAUAAAAU	chrM:13725-13959(+)$1	234	134	155	27.0000
UAUACUAAUCUCCCUACAAAU	chrM:11019-11224(+)$1	205	31	52	30.5555
CAAACUAACCUCAAAACAAAU	chrM:8596-8798(+)$1	202	80	101	42.1111
CUUACUAACAUUAACGAAAAU	chrM:13566-13772(+)$1	206	88	109	34.5555
CAAACUAACCUCAAAACAAAU	chrM:8576-8778(+)$1	202	100	121	42.1111
UAUACUAAUCUCCCUACAAAU	chrM:11034-11271(+)$1	237	16	37	30.5555
CAAACUAACCUCAAAACAAAU	chrM:8598-8801(+)$1	203	78	99	42.1111
CAAACUAACCUCAAAACAAAU	chrM:8578-8783(+)$1	205	98	119	42.1111
CUUACUAACAUUAACGAAAAU	chrM:13585-13790(+)$1	205	69	90	34.5555
ACUACUAACCUUCAUUCAAAU	chr6:87968240-87968540(+)$1	300	102	123	28.7777
CAAACUAACCUCAAAACAAAU	chrM:8565-8769(+)$1	204	111	132	42.1111
CAAACUAACCUCAAAACAAAU	chrM:8561-8765(+)$1	204	115	136	42.1111
CUUACUAACAUUAACGAAAAU	chrM:13641-13844(+)$1	203	13	34	34.5555
CAAACUAACCUCAAAACAAAU	chrM:8601-8810(+)$1	209	75	96	42.1111
CAAACUAACCUCAAAACAAAU	chrM:8583-8787(+)$1	204	93	114	42.1111
UAUACUAAUCUCCCUACAAAU	chrM:10956-11167(+)$1	211	94	115	30.5555
CUUACUAACAUUAACGAAAAU	chrM:13590-13795(+)$1	205	64	85	34.5555
CUUACUAACAUUAACGAAAAU	chrM:13633-13841(+)$1	208	21	42	34.5555
CUUACUAACAUUAACGAAAAU	chrM:13572-13776(+)$1	204	82	103	34.5555
UAUACUAAUCUCCCUACAAAU	chrM:10967-11185(+)$1	218	83	104	30.5555
UAUACUAAUCUCCCUACAAAU	chrM:10934-11156(+)$1	222	116	137	30.5555

#otherMatches

#Struct PSSM
^^^^^^^^^^^^^^^^^^^^^	chrM:13510-13763(+)$1	253	144	165	34.5555
::::::::::::EEEEE::::	chrM:11024-11230(+)$1	206	26	47	30.5555
+++++++++++++++++gggg	chrM:8587-8796(+)$1	209	89	110	42.1111
+++++++++++++++++gggg	chrM:8613-8839(+)$1	226	63	84	42.1111
+++++++++++++++++gggg	chrM:8610-8813(+)$1	203	66	87	42.1111
^^^^^^^^^^^^^^^^^^^^^	chrM:13604-13810(+)$1	206	50	71	34.5555
::::ddddtttttttttttdd	chrM:13041-13255(+)$1	214	178	199	20.5555
cc^^^^^^^^^^^^^^^^^^c	chrM:8559-8761(+)$1	202	117	138	42.1111
^^^^^^^^^^^^^^^^^^^^^	chrM:13576-13779(+)$1	203	78	99	34.5555
:::::::::::::::::::::	chrM:10986-11193(+)$1	207	64	85	30.5555
^^^^^^^^^^^^^^^^^^^^^	chrM:13610-13817(+)$1	207	44	65	34.5555
:::::::::::::::::::::	chrM:10873-11115(+)$1	242	177	198	30.5555
::::::::::::iiiiiiiii	chrM:13697-13907(+)$1	210	162	183	27.0000
^^^^^^^^^^^^^^^^^^^^^	chrM:13579-13785(+)$1	206	75	96	34.5555
^^^^^^^^^^^^^^^^^^^^^	chrM:13595-13803(+)$1	208	59	80	34.5555
cc^^^^^^^^^^^^^^^^^^c	chrM:8556-8759(+)$1	203	120	141	42.1111
::::::::::::iiiiiiiii	chrM:13718-13925(+)$1	207	141	162	27.0000
cc^^^^^^^^^^^^^^^^^^c	chrM:8574-8776(+)$1	202	102	123	42.1111
:::::::::::::::::::::	chrM:10993-11219(+)$1	226	57	78	30.5555
cc^^^^^^^^^^^^^^^^^^c	chrM:8515-8756(+)$1	241	161	182	42.1111
cc^^^^^^^^^^^^^^^^^^c	chrM:8569-8774(+)$1	205	107	128	42.1111
b^^^^^^^^^^^^^^^^^^^^	chrM:13617-13832(+)$1	215	37	58	34.5555
::::::::::::iiiiiiiii	chrM:13707-13918(+)$1	211	152	173	27.0000
::::::::::::EEEEE::::	chrM:11030-11234(+)$1	204	20	41	30.5555
::::::::::::iiiiiiiii	chrM:13725-13959(+)$1	234	134	155	27.0000
:::DDDD::::::::::::::	chrM:11019-11224(+)$1	205	31	52	30.5555
+++++++++++++++++gggg	chrM:8596-8798(+)$1	202	80	101	42.1111
^^^^^^^^^^^^^^^^^^^^^	chrM:13566-13772(+)$1	206	88	109	34.5555
cc^^^^^^^^^^^^^^^^^^c	chrM:8576-8778(+)$1	202	100	121	42.1111
::::::::::::EEEEE::::	chrM:11034-11271(+)$1	237	16	37	30.5555
+++++++++++++++++gggg	chrM:8598-8801(+)$1	203	78	99	42.1111
cc^^^^^^^^^^^^^^^^^^c	chrM:8578-8783(+)$1	205	98	119	42.1111
^^^^^^^^^^^^^^^^^^^^^	chrM:13585-13790(+)$1	205	69	90	34.5555
:ggggggg[ccc!!dddd"""	chr6:87968240-87968540(+)$1	300	102	123	28.7777
cc^^^^^^^^^^^^^^^^^^c	chrM:8565-8769(+)$1	204	111	132	42.1111
cc^^^^^^^^^^^^^^^^^^c	chrM:8561-8765(+)$1	204	115	136	42.1111
b^^^^^^^^^^^^^^^^^^^^	chrM:13641-13844(+)$1	203	13	34	34.5555
+++++++++++++++++gggg	chrM:8601-8810(+)$1	209	75	96	42.1111
+++++++++++++++++gggg	chrM:8583-8787(+)$1	204	93	114	42.1111
:::::::::::::::::::::	chrM:10956-11167(+)$1	211	94	115	30.5555
^^^^^^^^^^^^^^^^^^^^^	chrM:13590-13795(+)$1	205	64	85	34.5555
^^^^^^^^^^^^^^ccc5555	chrM:13633-13841(+)$1	208	21	42	34.5555
^^^^^^^^^^^^^^^^^^^^^	chrM:13572-13776(+)$1	204	82	103	34.5555
:::::::::::::::::::::	chrM:10967-11185(+)$1	218	83	104	30.5555
:::::::::::::::::::::	chrM:10934-11156(+)$1	222	116	137	30.5555

#DB
.....................	chrM:13510-13763(+)$1	1	144	165	34.5555
............(((((....	chrM:11024-11230(+)$1	1	26	47	30.5555
.................((((	chrM:8587-8796(+)$1	1	89	110	42.1111
.................((((	chrM:8613-8839(+)$1	1	63	84	42.1111
.................((((	chrM:8610-8813(+)$1	1	66	87	42.1111
.....................	chrM:13604-13810(+)$1	1	50	71	34.5555
....((((...........))	chrM:13041-13255(+)$1	1	178	199	20.5555
((..................)	chrM:8559-8761(+)$1	1	117	138	42.1111
.....................	chrM:13576-13779(+)$1	1	78	99	34.5555
.....................	chrM:10986-11193(+)$1	1	64	85	30.5555
.....................	chrM:13610-13817(+)$1	1	44	65	34.5555
.....................	chrM:10873-11115(+)$1	1	177	198	30.5555
............(((((((((	chrM:13697-13907(+)$1	1	162	183	27.0000
.....................	chrM:13579-13785(+)$1	1	75	96	34.5555
.....................	chrM:13595-13803(+)$1	1	59	80	34.5555
((..................)	chrM:8556-8759(+)$1	1	120	141	42.1111
............(((((((((	chrM:13718-13925(+)$1	1	141	162	27.0000
((..................)	chrM:8574-8776(+)$1	1	102	123	42.1111
.....................	chrM:10993-11219(+)$1	1	57	78	30.5555
((..................)	chrM:8515-8756(+)$1	1	161	182	42.1111
((..................)	chrM:8569-8774(+)$1	1	107	128	42.1111
(....................	chrM:13617-13832(+)$1	1	37	58	34.5555
............(((((((((	chrM:13707-13918(+)$1	1	152	173	27.0000
............(((((....	chrM:11030-11234(+)$1	1	20	41	30.5555
............(((((((((	chrM:13725-13959(+)$1	1	134	155	27.0000
...((((..............	chrM:11019-11224(+)$1	1	31	52	30.5555
.................((((	chrM:8596-8798(+)$1	1	80	101	42.1111
.....................	chrM:13566-13772(+)$1	1	88	109	34.5555
((..................)	chrM:8576-8778(+)$1	1	100	121	42.1111
............(((((....	chrM:11034-11271(+)$1	1	16	37	30.5555
.................((((	chrM:8598-8801(+)$1	1	78	99	42.1111
((..................)	chrM:8578-8783(+)$1	1	98	119	42.1111
.....................	chrM:13585-13790(+)$1	1	69	90	34.5555
.(((((((.(((..((((...	chr6:87968240-87968540(+)$1	1	102	123	28.7777
((..................)	chrM:8565-8769(+)$1	1	111	132	42.1111
((..................)	chrM:8561-8765(+)$1	1	115	136	42.1111
(....................	chrM:13641-13844(+)$1	1	13	34	34.5555
.................((((	chrM:8601-8810(+)$1	1	75	96	42.1111
.................((((	chrM:8583-8787(+)$1	1	93	114	42.1111
.....................	chrM:10956-11167(+)$1	1	94	115	30.5555
.....................	chrM:13590-13795(+)$1	1	64	85	34.5555
..............)))....	chrM:13633-13841(+)$1	1	21	42	34.5555
.....................	chrM:13572-13776(+)$1	1	82	103	34.5555
.....................	chrM:10967-11185(+)$1	1	83	104	30.5555
.....................	chrM:10934-11156(+)$1	1	116	137	30.5555

#PSSM
C : 0.75	U : 0.22	A : 0.02	
A : 0.59	U : 0.28	C : 0.11	
U : 0.53	A : 0.46	
A : 1.00	
C : 0.97	A : 0.02	
U : 0.91	A : 0.08	
A : 0.97	G : 0.02	
A : 1.00	
C : 0.77	U : 0.22	
C : 0.59	A : 0.31	U : 0.08	
U : 1.00	
C : 0.59	U : 0.31	A : 0.08	
A : 0.75	C : 0.24	
A : 0.77	C : 0.22	
A : 0.46	C : 0.28	U : 0.24	
A : 0.59	G : 0.28	U : 0.11	
C : 0.59	A : 0.39	
A : 1.00	
A : 1.00	
A : 0.97	U : 0.02	
U : 0.97	C : 0.02	

#score	1585.8888888888896
#seq	45
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_UTR_m1_run2.nuc.txt

#NT
GGGGGGGGUGGGGGG	chr5:137688313-137688667(+)$1	354	45	60	25.8510
GGCGGGUCCGGGGGG	chr3:128840308-128840628(-)$1	320	37	52	21.3829
AGUGGGGGGGAGGGG	chr20:57467339-57467612(+)$1	273	235	250	22.1276
GGCGGGGAGGGACGG	chr1:161087990-161088280(+)$1	290	65	80	20.4255
ggcgcggggaggggg	chr15:64752854-64753156(+)$1	302	13	28	25.4255
ggcggcggggggggg	chr19:42788461-42788740(+)$1	279	252	267	28.6170
GGCCGUGGGGUGGGG	chr4:2935714-2935977(-)$1	263	24	39	21.4893
GGCAUGGGGUGGGGG	chr5:43291021-43291271(-)$1	250	75	90	22.3404
GGGGGGGGGGGUGGG	chr11:60658387-60658660(-)$1	273	83	98	24.8936
ggcgggcggcggggg	chr7:77166718-77166977(+)$1	259	97	112	26.5957
GGUGGGGGGUGGGGG	chr10:21785873-21786177(-)$1	304	76	91	27.3404
GGCGGGGAGGGGGUG	chr2:28974736-28974994(+)$1	258	91	106	24.3617
GGCGGGCGGGCGGGG	chr15:66084350-66084611(-)$1	261	96	111	25.6382
GGCAGGGGCGGGGGC	chrX:19002513-19002757(-)$1	244	21	36	21.1702
GGCGAGAGGGAGGGG	chr14:64971275-64971548(+)$1	273	86	101	21.2765
ggaggagggcagggg	chr6:86352564-86352815(-)$1	251	23	38	19.7872
ggccgggggucgggg	chr8:25315651-25315919(-)$1	268	232	247	22.6595
GGUGGGGGCGGGGGG	chr17:79860510-79860762(-)$1	252	94	109	26.3829
GGUGGGGGGUGGGGG	chr10:105361303-105361573(-)$1	270	93	108	27.3404
GGCGGGAGGGGGGUG	chr17:58469149-58469460(-)$1	311	99	114	24.5744
GGCGGGGGAGGGGGU	chr2:62932854-62933097(+)$1	243	44	59	24.3617
UGCGCGGGUGGGGGG	chr16:30959821-30960156(+)$1	335	80	95	20.6382
ggcggggcgggGAGG	chr19:56166203-56166480(+)$1	277	104	119	24.7872
GAUGGGGGUGGGGGG	chr9:117027246-117027457(+)$1	211	186	201	21.7021
GGCGGGCGGGGAGGG	chr4:83931828-83932088(-)$1	260	75	90	25.2127
ggcggggggcggggc	chr8:143484098-143484385(-)$1	287	60	75	25.5319
GGCGGGGAGGGAGGG	chr14:32546303-32546550(+)$1	247	77	92	24.5744
GGAGGGUGCGAGGGG	chr7:32931177-32931441(-)$1	264	107	122	18.8297
GGCGAGGGGAGGGAG	chr5:179248447-179248780(+)$1	333	146	161	21.1702
ggugggguggggggg	chr2:20550261-20550595(-)$1	334	91	106	25.7446
ggcgggcgggggagg	chr2:191513658-191513921(+)$1	263	61	76	25.4255
GGCGGGGCGGGGUGG	chr16:30935307-30935576(+)$1	269	94	109	24.5744
GGCGGAGGGCGGUGG	chr1:201123359-201123658(-)$1	299	274	289	22.2340
GGCAUGGGGUGGGGG	chr5:43291071-43291288(-)$1	217	92	107	22.3404
ggagggggugggggg	chr2:54197821-54198044(-)$1	223	93	108	26.0638
GGCCGUGGGGUGGGG	chr4:2935877-2936133(-)$1	256	180	195	21.4893
ggcgggggguggggu	chr14:23791035-23791282(+)$1	247	77	92	25.6382
GGCGGUGGGAGGGGG	chr9:139743356-139743598(+)$1	242	80	95	25.9574
UGCGGAGGGGGGAGG	chr3:38207235-38207502(+)$1	267	216	231	20.7446
GGUUGGGGUGGGGGG	chr5:137088257-137088562(-)$1	305	97	112	22.5531
ggcagggggcggggg	chr7:27153331-27153580(-)$1	249	50	65	26.3829
GGAGGGGGGUGGAGG	chr14:55255837-55256110(+)$1	273	92	107	23.0851
agcggGCGGGCGGGG	chr11:18034120-18034395(-)$1	275	59	74	21.2765
GGCGGUGGGGAGGAG	chr7:77166501-77166749(+)$1	248	210	225	21.2765
GGUGGGCGGCGGGCG	chr17:74380113-74380342(+)$1	229	19	34	19.5744
ggcagagggggaggg	chr10:103577725-103578033(-)$1	308	120	135	21.3829

#otherMatches

#Struct PSSM
GGGGGGGZZZBBCCC	chr7:139257475-139257744(-)$1	269	214	229	32.5531
G{EEEEE{EEEEEKK	chr5:137688313-137688667(+)$1	354	45	60	25.8510
JJJbb[cccnnnnnc	chr3:128840308-128840628(-)$1	320	37	52	21.3829
:cccuuuuuuuuuuu	chr20:57467339-57467612(+)$1	273	235	250	22.1276
hhhhh::::::::::	chr1:161087990-161088280(+)$1	290	65	80	20.4255
ccc[a[bb$$$$$cc	chr15:64752854-64753156(+)$1	302	13	28	25.4255
EEEGGGGGGG}DDDD	chr19:42788461-42788740(+)$1	279	252	267	28.6170
CCCKKEEEEE:hhhh	chr4:2935714-2935977(-)$1	263	24	39	21.4893
EEEDDDD{A{IIIII	chr5:43291021-43291271(-)$1	250	75	90	22.3404
i]ccciiiiiiiii[	chr11:60658387-60658660(-)$1	273	83	98	24.8936
!!a[ccc[dddd!!a	chr7:77166718-77166977(+)$1	259	97	112	26.5957
iiiiiiiii]bb:ee	chr10:21785873-21786177(-)$1	304	76	91	27.3404
EEEEE{A{DDDD{BB	chr2:28974736-28974994(+)$1	258	91	106	24.3617
AHHHHHHHH{DDDDG	chr15:66084350-66084611(-)$1	261	96	111	25.6382
FFF{DDDD{EEEEE{	chrX:19002513-19002757(-)$1	244	21	36	21.1702
KCCC{A{FFFFFF::	chr14:64971275-64971548(+)$1	273	86	101	21.2765
GKKALLLCCCLLLHH	chr6:86352564-86352815(-)$1	251	23	38	19.7872
}BBbb"""cccqqqq	chr8:25315651-25315919(-)$1	268	232	247	22.6595
a[gggggggnnnnng	chr17:79860510-79860762(-)$1	252	94	109	26.3829
eee[aa[dddd!!ee	chr10:105361303-105361573(-)$1	270	93	108	27.3404
dddd:::ggggggg[	chr17:58469149-58469460(-)$1	311	99	114	24.5744
cccbb[ccc[bb[bb	chr2:62932854-62933097(+)$1	243	44	59	24.3617
c]a]ccc]a4444ee	chr16:30959821-30960156(+)$1	335	80	95	20.6382
eee!!eeeeeooooo	chr19:56166203-56166480(+)$1	277	104	119	24.7872
b]gggggggFFFFFF	chr9:117027246-117027457(+)$1	211	186	201	21.7021
ooooa]a]ffffff]	chr4:83931828-83932088(-)$1	260	75	90	25.2127
DDDD:bb[dddd!!d	chr8:143484098-143484385(-)$1	287	60	75	25.5319
c]dddd22bb333bb	chr14:32546303-32546550(+)$1	247	77	92	24.5744
gggggggccc::bbm	chr7:32931177-32931441(-)$1	264	107	122	18.8297
FFFF::BBLLLFFFF	chr5:179248447-179248780(+)$1	333	146	161	21.1702
CEEEEE{CCCKKDDD	chr2:20550261-20550595(-)$1	334	91	106	25.7446
eeeee[ccc[bb(((	chr2:191513658-191513921(+)$1	263	61	76	25.4255
DD:eeeee####ddd	chr16:30935307-30935576(+)$1	269	94	109	24.5744
========]eeeee3	chr1:201123359-201123658(-)$1	299	274	289	22.2340
2bb]bb]hhhhhhhh	chr5:43291071-43291288(-)$1	217	92	107	22.3404
c"""ccc[a[eeeee	chr2:54197821-54198044(-)$1	223	93	108	26.0638
}DDDD}BB}BBhhhh	chr4:2935877-2936133(-)$1	256	180	195	21.4893
2bb333dddd55555	chr14:23791035-23791282(+)$1	247	77	92	25.6382
MDDDD{BBKKDDDD{	chr9:139743356-139743598(+)$1	242	80	95	25.9574
iiiittttttttttt	chr3:38207235-38207502(+)$1	267	216	231	20.7446
ffff[ggggggg!!d	chr5:137088257-137088562(-)$1	305	97	112	22.5531
ggggg22ccc]a]cc	chr7:27153331-27153580(-)$1	249	50	65	26.3829
::ffffff[bb"""a	chr14:55255837-55256110(+)$1	273	92	107	23.0851
C{FFFFFF:gggggg	chr11:18034120-18034395(-)$1	275	59	74	21.2765
Ceeeeexxxxxxxxx	chr7:77166501-77166749(+)$1	248	210	225	21.2765
ccc[bb[ddddpppp	chr17:74380113-74380342(+)$1	229	19	34	19.5744
IIIZZZBB}BBZZZB	chr10:103577725-103578033(-)$1	308	120	135	21.3829

#DB
)))))))...)))))	chr7:139257475-139257744(-)$1	1	214	229	32.5531
(.(((((.(((((..	chr5:137688313-137688667(+)$1	1	45	60	25.8510
(((((.(((.....)	chr3:128840308-128840628(-)$1	1	37	52	21.3829
.(((...........	chr20:57467339-57467612(+)$1	1	235	250	22.1276
)))))..........	chr1:161087990-161088280(+)$1	1	65	80	20.4255
(((.(.((.....((	chr15:64752854-64753156(+)$1	1	13	28	25.4255
)))))))))).))))	chr19:42788461-42788740(+)$1	1	252	267	28.6170
(((..(((((.((((	chr4:2935714-2935977(-)$1	1	24	39	21.4893
(((((((.(.(((((	chr5:43291021-43291271(-)$1	1	75	90	22.3404
).)))(((((((((.	chr11:60658387-60658660(-)$1	1	83	98	24.8936
..(.(((.((((..(	chr7:77166718-77166977(+)$1	1	97	112	26.5957
))))))))).)).((	chr10:21785873-21786177(-)$1	1	76	91	27.3404
(((((.(.((((.((	chr2:28974736-28974994(+)$1	1	91	106	24.3617
(((((((((.(((((	chr15:66084350-66084611(-)$1	1	96	111	25.6382
(((.((((.(((((.	chrX:19002513-19002757(-)$1	1	21	36	21.1702
.(((.(.((((((..	chr14:64971275-64971548(+)$1	1	86	101	21.2765
(..(...(((...((	chr6:86352564-86352815(-)$1	1	23	38	19.7872
.))((...(((....	chr8:25315651-25315919(-)$1	1	232	247	22.6595
(.(((((((.....)	chr17:79860510-79860762(-)$1	1	94	109	26.3829
(((.((.((((..((	chr10:105361303-105361573(-)$1	1	93	108	27.3404
))))...(((((((.	chr17:58469149-58469460(-)$1	1	99	114	24.5744
(((((.(((.((.((	chr2:62932854-62933097(+)$1	1	44	59	24.3617
).).))).)....))	chr16:30959821-30960156(+)$1	1	80	95	20.6382
(((..(((((.....	chr19:56166203-56166480(+)$1	1	104	119	24.7872
).)))))))))))))	chr9:117027246-117027457(+)$1	1	186	201	21.7021
....).).)))))).	chr4:83931828-83932088(-)$1	1	75	90	25.2127
((((.((.((((..(	chr8:143484098-143484385(-)$1	1	60	75	25.5319
).))))..))...))	chr14:32546303-32546550(+)$1	1	77	92	24.5744
))))))))))..((.	chr7:32931177-32931441(-)$1	1	107	122	18.8297
))))..((...((((	chr5:179248447-179248780(+)$1	1	146	161	21.1702
((((((.(((..(((	chr2:20550261-20550595(-)$1	1	91	106	25.7446
(((((.(((.((...	chr2:191513658-191513921(+)$1	1	61	76	25.4255
((.(((((....(((	chr16:30935307-30935576(+)$1	1	94	109	24.5744
)))))))).))))).	chr1:201123359-201123658(-)$1	1	274	289	22.2340
.)).)).))))))))	chr5:43291071-43291288(-)$1	1	92	107	22.3404
(...(((.(.(((((	chr2:54197821-54198044(-)$1	1	93	108	26.0638
.)))).)).))((((	chr4:2935877-2936133(-)$1	1	180	195	21.4893
.))...)))).....	chr14:23791035-23791282(+)$1	1	77	92	25.6382
.((((.((..((((.	chr9:139743356-139743598(+)$1	1	80	95	25.9574
((((...........	chr3:38207235-38207502(+)$1	1	216	231	20.7446
((((.(((((((..(	chr5:137088257-137088562(-)$1	1	97	112	22.5531
)))))..))).).))	chr7:27153331-27153580(-)$1	1	50	65	26.3829
..((((((.((...(	chr14:55255837-55256110(+)$1	1	92	107	23.0851
(.((((((.((((((	chr11:18034120-18034395(-)$1	1	59	74	21.2765
)(((((.........	chr7:77166501-77166749(+)$1	1	210	225	21.2765
(((.((.((((....	chr17:74380113-74380342(+)$1	1	19	34	19.5744
)))...)).))...)	chr10:103577725-103578033(-)$1	1	120	135	21.3829

#PSSM
G : 0.61	g : 0.29	U : 0.04	A : 0.02	a : 0.02	
G : 0.65	g : 0.31	A : 0.02	
C : 0.44	c : 0.25	U : 0.14	G : 0.04	a : 0.04	A : 0.04	u : 0.02	
G : 0.55	g : 0.25	A : 0.06	C : 0.04	a : 0.04	c : 0.02	U : 0.02	
G : 0.57	g : 0.29	U : 0.04	A : 0.04	c : 0.02	C : 0.02	
G : 0.57	g : 0.23	U : 0.08	a : 0.04	A : 0.04	c : 0.02	
G : 0.53	g : 0.25	C : 0.08	U : 0.04	c : 0.04	A : 0.04	
G : 0.59	g : 0.25	A : 0.06	C : 0.04	c : 0.02	u : 0.02	
G : 0.51	g : 0.27	U : 0.08	C : 0.08	A : 0.02	u : 0.02	
G : 0.51	g : 0.14	U : 0.10	c : 0.08	u : 0.04	A : 0.04	C : 0.04	a : 0.02	
G : 0.53	g : 0.25	A : 0.08	U : 0.04	C : 0.04	a : 0.02	c : 0.02	
G : 0.63	g : 0.25	A : 0.06	U : 0.02	a : 0.02	
G : 0.59	g : 0.25	A : 0.06	U : 0.04	C : 0.02	a : 0.02	
G : 0.61	g : 0.27	U : 0.04	A : 0.04	C : 0.02	
G : 0.68	g : 0.23	C : 0.02	U : 0.02	c : 0.02	u : 0.02	

#score	1114.7872340425536
#seq	47
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_transcript_m2_run1.nuc.txt

#NT
CCUCAUUCUCUCCCGUGCCC	chr12:121418545-121418814(-)$1	269	108	128	18.9215
CCGCUGCCCCCGCCCUCCCC	chr17:7154841-7155107(-)$1	266	22	42	15.6862
ccucccuccucccuccuccc	chr2:11470863-11471152(-)$1	289	58	78	24.1176
CCUCCCUGUCUGCACUGCCC	chr20:32667762-32668064(+)$1	302	149	169	20.1960
CCUCAGCCCCUGCUGUCCCC	chr7:2702255-2702513(+)$1	258	74	94	15.7843
ccucccucccuccucuuccc	chr19:56172475-56172758(+)$1	283	256	276	32.1568
CCUCUUCCCUGCCUCUUCCC	chr19:47113423-47113713(+)$1	290	125	145	17.1568
CCCCUCAGCCUCCCCAUCCC	chr3:47452187-47452432(+)$1	245	222	242	20.9803
CCGGCCUCCUUCCCCGGCCG	chr12:106641543-106641791(-)$1	248	2	22	16.3725
CCCCUGUCCCCACCCUUCCU	chr1:24121177-24121483(+)$1	306	131	151	17.2549
CCUCCCCCUUGUCCUUUCCC	chr6:36654257-36654554(+)$1	297	133	153	16.6666
CCCCCUUCCCAUUUCUUCCC	chr11:57585401-57585676(+)$1	275	107	127	18.9215
GCCUCCUGCCUCCUUUUCCU	chr11:64897638-64897906(-)$1	268	64	84	15.2941
CCAGCCUCUGUCCACUUCCU	chr9:95883923-95884209(-)$1	286	167	187	16.6666
CCACCGCCUGUCCCCCUCCC	chr11:2160053-2160256(-)$1	203	48	68	18.4313
CCUCCCUUCCUCCGCUCCCC	chr1:160328128-160328397(+)$1	269	103	123	26.9607
CCUCCCCUCCACCACUUCCU	chr14:23346708-23346979(+)$1	271	106	126	19.8039
cccgcgccccgcgcccUCCC	chr17:37856360-37856653(+)$1	293	65	85	15.0000
ucucccucccuccccuuucu	chr4:74312973-74313205(+)$1	232	105	125	21.7647
GCCUCCUUCCUCCCCUGCCU	chrX:152966210-152966504(-)$1	294	115	135	17.4509
CCCUCCUCUCUUCCGCCCCC	chr19:6414039-6414356(-)$1	317	147	167	17.5490
CCCCCCAUCCCCCCGUUCCC	chr16:28848181-28848430(+)$1	249	5	25	21.6666
CCUCCCUCCCUUUCCUACCA	chr1:160968345-160968613(-)$1	268	132	152	20.1960
CCCCGCCGCCUCCUCUUCAU	chr11:2160291-2160510(-)$1	219	102	122	15.5882
CCCACCUCCUUCUCCUCCCC	chr17:41167144-41167458(-)$1	314	135	155	21.2745
ccucccucccucccucucca	chr14:103575454-103575694(+)$1	240	95	115	24.8039
ccucccucccuccuuuccuc	chr20:52120124-52120439(-)$1	315	98	118	24.5098
CGcccuucccuccgcuucuc	chr11:2159896-2160104(-)$1	208	36	56	20.7843
UUUCCCUCCCUCCCCACUCC	chr11:120099838-120100083(+)$1	245	101	121	16.4705
CACCACAGCCUCCCCUUCCC	chr22:36678452-36678747(-)$1	295	73	93	19.5098
ACUCCCUGCCUCCUCCUCUC	chr11:118915283-118915597(-)$1	314	132	152	19.3137
ccgcccgcgccccgcacccc	chrX:152953789-152954111(+)$1	322	60	80	16.1764
CGcccuucccuccgcuucuc	chr11:2159997-2160217(-)$1	220	149	169	20.7843
CCCCCAUCCCCGCUUCGCCC	chr11:2160193-2160397(-)$1	204	21	41	15.2941
CCCCACUCCAUACCCUUCUC	chr10:102743968-102744207(+)$1	239	14	34	19.4117
ccgcccguccuccacgcccc	chr19:2227777-2228083(+)$1	306	194	214	19.2156
UCUUCCUUUCuccccuuccc	chr2:42537350-42537628(+)$1	278	52	72	20.2941
CCCUCUUCCUUUCCCACCCC	chr19:56206785-56207045(+)$1	260	74	94	16.5686
ccucccuuucuccucuccuc	chr11:61044213-61044494(-)$1	281	103	123	21.5686
CCUACCUCCUUCCCUGUCCC	chr1:32799802-32800027(-)$1	225	94	114	21.0784
CCUCCCUCUCUCCCGCCCCG	chr11:63448937-63449236(+)$1	299	111	131	20.3921
ccgcCCUCGCACCCUUGCCC	chr1:11986188-11986449(-)$1	261	120	140	20.2941
ccucccucccuucuuuucuc	chr15:25293979-25294233(+)$1	254	170	190	23.0392
GCUCCCACCCUGCCCUGGCC	chr6:41567122-41567380(+)$1	258	52	72	16.8627
ccccggcccgucccgucccc	chr20:57466076-57466340(+)$1	264	123	143	16.5686
CCACCGCCUGUCCCCCUCCC	chr11:2160070-2160279(-)$1	209	71	91	18.4313
CCccccuccccuuccucccc	chr10:121355958-121356253(-)$1	295	194	214	22.1568
cccaccucccuccaccucuc	chr7:917362-917670(+)$1	308	20	40	22.0588
CUUCccucccacuucuuccc	chr16:16291377-16291672(-)$1	295	260	280	20.8823
CCACCCACCCGCCGCCUCCC	chr17:80036809-80037033(-)$1	224	175	195	21.6666

#otherMatches

#Struct PSSM
ddd:::::::BBDDDD::::	chr4:77996639-77996936(-)$1	297	136	156	18.0392
gvvvvvvvvvvvvvgggggg	chr12:121418545-121418814(-)$1	269	108	128	18.9215
f[eeeee"""cccvvvvvvv	chr17:7154841-7155107(-)$1	266	22	42	15.6862
::::::::::::::::::::	chr2:11470863-11471152(-)$1	289	58	78	24.1176
DD::EEEEEPPPPPPPIIII	chr20:32667762-32668064(+)$1	302	149	169	20.1960
pa]eeeee333ccceeeeen	chr7:2702255-2702513(+)$1	258	74	94	15.7843
4444dddd::::::::::::	chr19:56172475-56172758(+)$1	283	256	276	32.1568
e:::::::::::::::::::	chr19:47113423-47113713(+)$1	290	125	145	17.1568
::::::::::::::::::::	chr3:47452187-47452432(+)$1	245	222	242	20.9803
[eeeeerrrrrrrrreeeee	chr12:106641543-106641791(-)$1	248	2	22	16.3725
cc==========$$$$$ddd	chr1:24121177-24121483(+)$1	306	131	151	17.2549
ggg[eeeee+++++++++++	chr6:36654257-36654554(+)$1	297	133	153	16.6666
!!bb^^^^^^^^^^^^^^^^	chr11:57585401-57585676(+)$1	275	107	127	18.9215
EEA{EEEEEBB:::::::::	chr11:64897638-64897906(-)$1	268	64	84	15.2941
GGGGGGGYYFFFFFF@@@@@	chr9:95883923-95884209(-)$1	286	167	187	16.6666
cc!!ccc!!dddd[cccmmm	chr11:2160053-2160256(-)$1	203	48	68	18.4313
2ffffffbbaggggggg:::	chr1:160328128-160328397(+)$1	269	103	123	26.9607
h%%%%%%ggggggg++++++	chr14:23346708-23346979(+)$1	271	106	126	19.8039
C::ccca[ccc[eeeee$$$	chr17:37856360-37856653(+)$1	293	65	85	15.0000
^^^^^^^^^^^^^^^^^^^^	chr4:74312973-74313205(+)$1	232	105	125	21.7647
DDDCCCJJJJJJJJJJJJJ:	chrX:152966210-152966504(-)$1	294	115	135	17.4509
c:::::::::::::::::::	chr19:6414039-6414356(-)$1	317	147	167	17.5490
f[ddddyyyyyyyyyyyyyy	chr16:28848181-28848430(+)$1	249	5	25	21.6666
LLFFFFFF::::ccc!!eee	chr1:160968345-160968613(-)$1	268	132	152	20.1960
&&&&===========^^^^^	chr11:2160291-2160510(-)$1	219	102	122	15.5882
vvvv===========]bbbb	chr17:41167144-41167458(-)$1	314	135	155	21.2745
::::::::::::::::::cc	chr14:103575454-103575694(+)$1	240	95	115	24.8039
~EEEEE::::::::::::::	chr20:52120124-52120439(-)$1	315	98	118	24.5098
eee(((((((((cccooooo	chr11:2159896-2160104(-)$1	208	36	56	20.7843
OOODDDD{BBLLLDDDDFFF	chr11:120099838-120100083(+)$1	245	101	121	16.4705
:::ffffff[dddd++++++	chr22:36678452-36678747(-)$1	295	73	93	19.5098
EEEEE}DDDDYYEEEEE}EE	chr11:118915283-118915597(-)$1	314	132	152	19.3137
EEEKKEEEEE:::eeeee!!	chrX:152953789-152954111(+)$1	322	60	80	16.1764
GGGGG~~~~CCC:bbqqqqq	chr11:2159997-2160217(-)$1	220	149	169	20.7843
:::::::::gggggggpppp	chr11:2160193-2160397(-)$1	204	21	41	15.2941
::::::::::::::::::::	chr10:102743968-102744207(+)$1	239	14	34	19.4117
ffeeeee:::::::::::::	chr19:2227777-2228083(+)$1	306	194	214	19.2156
pppccc7777777dddd:::	chr2:42537350-42537628(+)$1	278	52	72	20.2941
bb!!============eeee	chr19:56206785-56207045(+)$1	260	74	94	16.5686
::::::::::::::::::::	chr11:61044213-61044494(-)$1	281	103	123	21.5686
f22bb88888888dddd:::	chr1:32799802-32800027(-)$1	225	94	114	21.0784
^^^^^^^^^^ccc]bb22a3	chr11:63448937-63449236(+)$1	299	111	131	20.3921
ddddffffff55555fffff	chr1:11986188-11986449(-)$1	261	120	140	20.2941
::::::::::::::::::::	chr15:25293979-25294233(+)$1	254	170	190	23.0392
bbrrrrrrrrrbb:dddd""	chr6:41567122-41567380(+)$1	258	52	72	16.8627
==]a]ccc]bb22bb]dddd	chr20:57466076-57466340(+)$1	264	123	143	16.5686
mdddddddduuuuuuuuuuu	chr11:2160070-2160279(-)$1	209	71	91	18.4313
fff22ccc]a4444ccc]a2	chr10:121355958-121356253(-)$1	295	194	214	22.1568
::::::::::::::::::::	chr7:917362-917670(+)$1	308	20	40	22.0588
::::::::::::::::::::	chr16:16291377-16291672(-)$1	295	260	280	20.8823
BB}CCC}EEEEEA:::::::	chr17:80036809-80037033(-)$1	224	175	195	21.6666

#DB
))).......))))))....	chr4:77996639-77996936(-)$1	1	136	156	18.0392
(.............))))))	chr12:121418545-121418814(-)$1	1	108	128	18.9215
(.(((((...(((.......	chr17:7154841-7155107(-)$1	1	22	42	15.6862
....................	chr2:11470863-11471152(-)$1	1	58	78	24.1176
))..(((((.......((((	chr20:32667762-32668064(+)$1	1	149	169	20.1960
.).)))))...)))(((((.	chr7:2702255-2702513(+)$1	1	74	94	15.7843
....))))............	chr19:56172475-56172758(+)$1	1	256	276	32.1568
)...................	chr19:47113423-47113713(+)$1	1	125	145	17.1568
....................	chr3:47452187-47452432(+)$1	1	222	242	20.9803
.(((((.........)))))	chr12:106641543-106641791(-)$1	1	2	22	16.3725
((((((((((((.....(((	chr1:24121177-24121483(+)$1	1	131	151	17.2549
(((.(((((...........	chr6:36654257-36654554(+)$1	1	133	153	16.6666
..((................	chr11:57585401-57585676(+)$1	1	107	127	18.9215
(((.(((((((.........	chr11:64897638-64897906(-)$1	1	64	84	15.2941
)))))))..)))))).....	chr9:95883923-95884209(-)$1	1	167	187	16.6666
((..(((..((((.(((...	chr11:2160053-2160256(-)$1	1	48	68	18.4313
.))))))))))))))))...	chr1:160328128-160328397(+)$1	1	103	123	26.9607
(......(((((((......	chr14:23346708-23346979(+)$1	1	106	126	19.8039
(..((((.(((.(((((...	chr17:37856360-37856653(+)$1	1	65	85	15.0000
....................	chr4:74312973-74313205(+)$1	1	105	125	21.7647
))))))))))))))))))).	chrX:152966210-152966504(-)$1	1	115	135	17.4509
)...................	chr19:6414039-6414356(-)$1	1	147	167	17.5490
(.((((..............	chr16:28848181-28848430(+)$1	1	5	25	21.6666
..((((((....(((..(((	chr1:160968345-160968613(-)$1	1	132	152	20.1960
....(((((((((((.....	chr11:2160291-2160510(-)$1	1	102	122	15.5882
....))))))))))).))))	chr17:41167144-41167458(-)$1	1	135	155	21.2745
..................((	chr14:103575454-103575694(+)$1	1	95	115	24.8039
.)))))..............	chr20:52120124-52120439(-)$1	1	98	118	24.5098
(((.........(((.....	chr11:2159896-2160104(-)$1	1	36	56	20.7843
...((((.((...(((((((	chr11:120099838-120100083(+)$1	1	101	121	16.4705
...((((((.((((......	chr22:36678452-36678747(-)$1	1	73	93	19.5098
))))).))))..))))).))	chr11:118915283-118915597(-)$1	1	132	152	19.3137
(((..(((((...(((((..	chrX:152953789-152954111(+)$1	1	60	80	16.1764
)))))....))).((.....	chr11:2159997-2160217(-)$1	1	149	169	20.7843
.........(((((((....	chr11:2160193-2160397(-)$1	1	21	41	15.2941
....................	chr10:102743968-102744207(+)$1	1	14	34	19.4117
))))))).............	chr19:2227777-2228083(+)$1	1	194	214	19.2156
...))).......))))...	chr2:42537350-42537628(+)$1	1	52	72	20.2941
((..((((((((((((((((	chr19:56206785-56207045(+)$1	1	74	94	16.5686
....................	chr11:61044213-61044494(-)$1	1	103	123	21.5686
)..))........))))...	chr1:32799802-32800027(-)$1	1	94	114	21.0784
..........))).))..).	chr11:63448937-63449236(+)$1	1	111	131	20.3921
)))))))))).....)))))	chr1:11986188-11986449(-)$1	1	120	140	20.2941
....................	chr15:25293979-25294233(+)$1	1	170	190	23.0392
((.........)).((((..	chr6:41567122-41567380(+)$1	1	52	72	16.8627
)).).))).))..)).))))	chr20:57466076-57466340(+)$1	1	123	143	16.5686
.))))((((...........	chr11:2160070-2160279(-)$1	1	71	91	18.4313
)))..))).)....))).).	chr10:121355958-121356253(-)$1	1	194	214	22.1568
....................	chr7:917362-917670(+)$1	1	20	40	22.0588
....................	chr16:16291377-16291672(-)$1	1	260	280	20.8823
)).))).)))))).......	chr17:80036809-80037033(-)$1	1	175	195	21.6666

#PSSM
C : 0.60	c : 0.25	G : 0.05	U : 0.03	u : 0.01	A : 0.01	
C : 0.62	c : 0.25	G : 0.03	U : 0.03	g : 0.01	A : 0.01	
U : 0.29	C : 0.25	c : 0.13	u : 0.13	A : 0.07	g : 0.05	G : 0.03	
C : 0.49	c : 0.29	U : 0.09	G : 0.03	A : 0.03	g : 0.01	a : 0.01	
C : 0.49	c : 0.31	A : 0.07	U : 0.07	G : 0.01	g : 0.01	
C : 0.47	c : 0.25	G : 0.09	U : 0.07	g : 0.03	u : 0.03	A : 0.01	
U : 0.41	u : 0.23	C : 0.15	A : 0.09	c : 0.05	g : 0.03	
C : 0.45	c : 0.29	G : 0.11	U : 0.09	u : 0.03	
C : 0.47	c : 0.27	U : 0.17	g : 0.03	u : 0.01	G : 0.01	
C : 0.47	c : 0.27	U : 0.11	G : 0.05	A : 0.03	u : 0.01	g : 0.01	
U : 0.47	u : 0.23	C : 0.07	c : 0.05	G : 0.05	A : 0.05	g : 0.01	a : 0.01	
C : 0.43	c : 0.29	G : 0.09	U : 0.09	A : 0.03	u : 0.03	
C : 0.60	c : 0.27	U : 0.05	u : 0.03	g : 0.01	
C : 0.41	U : 0.13	u : 0.11	c : 0.11	G : 0.05	A : 0.05	g : 0.05	a : 0.03	
C : 0.47	c : 0.25	G : 0.09	U : 0.09	u : 0.05	g : 0.01	
U : 0.43	u : 0.21	C : 0.13	c : 0.07	A : 0.05	G : 0.03	a : 0.01	g : 0.01	
U : 0.37	u : 0.19	C : 0.15	G : 0.13	c : 0.11	A : 0.01	
C : 0.64	c : 0.29	u : 0.01	U : 0.01	G : 0.01	
C : 0.62	c : 0.19	u : 0.11	U : 0.03	A : 0.01	
C : 0.50	c : 0.27	U : 0.11	G : 0.03	u : 0.01	A : 0.01	a : 0.01	

#score	998.0392156862747
#seq	51
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_CDS_m2_run2.nuc.txt

#NT
CGCCGAGAGCGGGCCGGCG	chr12:62996807-62997118(+)$1	311	80	99	18.1363
ggcggcggcggcggcggcg	chr14:23790595-23790854(+)$1	259	85	104	30.1818
GGCCCUGGCGCCGUGGGCG	chr16:2029100-2029389(+)$1	289	2	21	16.5454
gguggacggggcgacggcg	chr16:89788070-89788313(+)$1	243	100	119	20.6363
UGGGCAGGGCGCGGCGGCG	chr11:637269-637528(+)$1	259	127	146	23.3636
UGCCGAGGACGCGGCGGCG	chr1:234614071-234614338(-)$1	267	37	56	28.8181
GGCCCAGGAGGGGACGGCA	chr1:27320165-27320415(+)$1	250	147	166	20.1818
ggcggcggcggcggcggcg	chr2:231902423-231902682(+)$1	259	135	154	30.1818
GGCCCUGGGCGCAGAGGCC	chr10:75551929-75552212(+)$1	283	251	270	17.2272
CUCCGGGGAggcgccggcc	chr17:79860162-79860406(-)$1	244	34	53	18.8181
cgccgggcaggcggcggcg	chr8:145687775-145688071(-)$1	296	138	157	24.9545
ugcggaggccacggcggGC	chr3:52567604-52567906(-)$1	302	198	217	19.7272
UGCCGGGGUGGCGGCAGUG	chr2:232574805-232575062(+)$1	257	100	119	19.2727
ggaggaggGAGCGGCGGAG	chr16:597128-597377(+)$1	249	117	136	22.4545
GGCGAGGCAGUCGGCUGCG	chr17:79860483-79860800(-)$1	317	182	201	15.4090
GGCCCAGGGUGCGGCGGGA	chr5:138629655-138629972(+)$1	317	99	118	21.5454
GCCAGAGGGGGCGGGGGGC	chr17:74379795-74380027(+)$1	232	106	125	17.2272
ggcggcggccgcugcggcc	chr21:47565643-47565898(-)$1	255	145	164	23.3636
GGCCCAGGAAgcggcggcc	chr3:13461595-13461878(-)$1	283	4	23	25.8636
cguggaggccggcgcggCG	chr17:41622773-41623039(+)$1	266	128	147	18.1363
cggggcgcaggcgggggcg	chr11:65325159-65325437(-)$1	278	151	170	18.1363

#otherMatches

#Struct PSSM
dDDDDKKCCC{BBeeeeem	chr7:127670459-127670707(+)$1	248	111	130	22.4545
eeeee333ffffff::ccc	chr12:62996807-62997118(+)$1	311	80	99	18.1363
cc]abb]ccc]dddd]ccc	chr14:23790595-23790854(+)$1	259	85	104	30.1818
CCCccc!!dddd!!hhhhh	chr16:2029100-2029389(+)$1	289	2	21	16.5454
hhhhh]ccccccdddd]cc	chr16:89788070-89788313(+)$1	243	100	119	20.6363
dd[bblllbb]dddd:===	chr11:637269-637528(+)$1	259	127	146	23.3636
KBBKKEEEEEgggggggdd	chr1:234614071-234614338(-)$1	267	37	56	28.8181
a::::::============	chr1:27320165-27320415(+)$1	250	147	166	20.1818
hhhgggggggdddd[cccm	chr2:231902423-231902682(+)$1	259	135	154	30.1818
eeeecccmmmmccc]eeee	chr10:75551929-75552212(+)$1	283	251	270	17.2272
ggggggg:::bb[gggggg	chr17:79860162-79860406(-)$1	244	34	53	18.8181
gggggrrrrrrrrrggggg	chr8:145687775-145688071(-)$1	296	138	157	24.9545
dddd333dddd22bb22ff	chr3:52567604-52567906(-)$1	302	198	217	19.7272
{BB{BB{A{CCC{GGGGGG	chr2:232574805-232575062(+)$1	257	100	119	19.2727
BBLLLA{BB{CCCeeeeef	chr16:597128-597377(+)$1	249	117	136	22.4545
dddoooooodddd]ccc::	chr17:79860483-79860800(-)$1	317	182	201	15.4090
=============[fffff	chr5:138629655-138629972(+)$1	317	99	118	21.5454
333==========ffffff	chr17:74379795-74380027(+)$1	232	106	125	17.2272
[eeeeemmmmeeeee]ccc	chr21:47565643-47565898(-)$1	255	145	164	23.3636
EEEEENNNNNCCCccc[ee	chr3:13461595-13461878(-)$1	283	4	23	25.8636
cooooooccc]bbffffff	chr17:41622773-41623039(+)$1	266	128	147	18.1363
CEEEEE}A}DDDDEEEEEE	chr11:65325159-65325437(-)$1	278	151	170	18.1363

#DB
)((((..(((.(((((((.	chr7:127670459-127670707(+)$1	1	111	130	22.4545
)))))...))))))..(((	chr12:62996807-62997118(+)$1	1	80	99	18.1363
)).))).))).)))).)))	chr14:23790595-23790854(+)$1	1	85	104	30.1818
((((((..((((..(((((	chr16:2029100-2029389(+)$1	1	2	21	16.5454
))))).)))))))))).))	chr16:89788070-89788313(+)$1	1	100	119	20.6363
((.((...)).)))).(((	chr11:637269-637528(+)$1	1	127	146	23.3636
.((..((((((((((((((	chr1:234614071-234614338(-)$1	1	37	56	28.8181
)......((((((((((((	chr1:27320165-27320415(+)$1	1	147	166	20.1818
((((((((((((((.(((.	chr2:231902423-231902682(+)$1	1	135	154	30.1818
(((((((....))).))))	chr10:75551929-75552212(+)$1	1	251	270	17.2272
)))))))...((.((((((	chr17:79860162-79860406(-)$1	1	34	53	18.8181
(((((.........)))))	chr8:145687775-145688071(-)$1	1	138	157	24.9545
))))...))))..))..))	chr3:52567604-52567906(-)$1	1	198	217	19.7272
.((.((.(.(((.((((((	chr2:232574805-232575062(+)$1	1	100	119	19.2727
((...(.((.(((((((((	chr16:597128-597377(+)$1	1	117	136	22.4545
(((......)))).)))..	chr17:79860483-79860800(-)$1	1	182	201	15.4090
(((((((((((((.(((((	chr5:138629655-138629972(+)$1	1	99	118	21.5454
...))))))))))((((((	chr17:74379795-74380027(+)$1	1	106	125	17.2272
.(((((....))))).)))	chr21:47565643-47565898(-)$1	1	145	164	23.3636
(((((.....((((((.((	chr3:13461595-13461878(-)$1	1	4	23	25.8636
(......))).))((((((	chr17:41622773-41623039(+)$1	1	128	147	18.1363
)))))).).)))))))))(	chr11:65325159-65325437(-)$1	1	151	170	18.1363

#PSSM
G : 0.36	g : 0.22	U : 0.13	c : 0.13	C : 0.09	u : 0.04	
G : 0.50	g : 0.40	U : 0.04	C : 0.04	
C : 0.54	c : 0.22	u : 0.09	G : 0.04	a : 0.04	g : 0.04	
C : 0.40	g : 0.36	G : 0.09	U : 0.04	c : 0.04	A : 0.04	
g : 0.40	G : 0.27	C : 0.27	A : 0.04	
A : 0.36	c : 0.18	a : 0.18	G : 0.13	U : 0.09	g : 0.04	
G : 0.59	g : 0.36	c : 0.04	
G : 0.50	g : 0.31	c : 0.09	A : 0.04	C : 0.04	
G : 0.27	c : 0.22	A : 0.22	C : 0.09	a : 0.09	g : 0.04	U : 0.04	
G : 0.27	g : 0.27	C : 0.18	c : 0.13	A : 0.09	U : 0.04	
G : 0.45	g : 0.40	C : 0.04	a : 0.04	U : 0.04	
C : 0.45	c : 0.40	G : 0.09	g : 0.04	
G : 0.45	g : 0.36	A : 0.09	u : 0.04	c : 0.04	
G : 0.40	g : 0.36	C : 0.04	U : 0.04	a : 0.04	A : 0.04	c : 0.04	
C : 0.40	c : 0.40	G : 0.09	A : 0.04	g : 0.04	
g : 0.45	G : 0.40	A : 0.09	U : 0.04	
G : 0.54	g : 0.45	
C : 0.40	c : 0.36	G : 0.13	U : 0.04	A : 0.04	
G : 0.40	g : 0.22	C : 0.13	c : 0.13	A : 0.09	

#score	472.6363636363636
#seq	22
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_UTR_m2_run2.nuc.txt

#NT
CCU	chr17:7477038-7477283(+)$1	245	42	45	9.0000
ccu	chr3:58520198-58520513(-)$1	315	54	57	9.0000
CCU	chr17:37883379-37883656(+)$1	277	14	17	9.0000
CCU	chr12:54106375-54106641(-)$1	266	38	41	9.0000
CCU	chr6:31638709-31638988(+)$1	279	161	164	9.0000
CCU	chr22:32003726-32004024(+)$1	298	4	7	9.0000
CCU	chr19:2228265-2228507(+)$1	242	26	29	9.0000
CCU	chr14:23791212-23791416(+)$1	204	12	15	9.0000
ccu	chr14:24614890-24615199(-)$1	309	42	45	9.0000
CCU	chr16:89805659-89805922(-)$1	263	20	23	9.0000
CCU	chr3:49051481-49051733(+)$1	252	80	83	9.0000
CCU	chr5:179264827-179265087(-)$1	260	53	56	9.0000
CCU	chr11:61109873-61110111(+)$1	238	22	25	9.0000
CCU	chr3:184100631-184100872(+)$1	241	4	7	9.0000
CCU	chr1:2327059-2327308(+)$1	249	0	3	9.0000
CCU	chr5:52386506-52386748(+)$1	242	39	42	9.0000
CCU	chr17:7477430-7477656(+)$1	226	70	73	9.0000
CCU	chr11:72534161-72534420(+)$1	259	47	50	9.0000
CCU	chr2:216177027-216177307(+)$1	280	4	7	9.0000
CCU	chr16:2581166-2581421(+)$1	255	1	4	9.0000
CCU	chr19:5933405-5933653(-)$1	248	43	46	9.0000
CCU	chr17:56082934-56083222(-)$1	288	14	17	9.0000
CCU	chr17:7481323-7481559(+)$1	236	25	28	9.0000
CCU	chr17:7477394-7477630(+)$1	236	11	14	9.0000
CCU	chr5:172755102-172755394(-)$1	292	42	45	9.0000
CCU	chr19:54971742-54971991(+)$1	249	153	156	9.0000
CCU	chr17:62498269-62498494(-)$1	225	157	160	9.0000
CCU	chr17:7477340-7477585(+)$1	245	14	17	9.0000
CCU	chr16:89724493-89724758(+)$1	265	114	117	9.0000
CCU	chr17:42398546-42398801(-)$1	255	17	20	9.0000
CCU	chr17:2593182-2593453(-)$1	271	39	42	9.0000
CCU	chr3:48670988-48671252(-)$1	264	11	14	9.0000
CCU	chr11:85374568-85374811(-)$1	243	1	4	9.0000
CCU	chrX:128581116-128581365(-)$1	249	82	85	9.0000
CCU	chr17:79211180-79211444(-)$1	264	14	17	9.0000
CCU	chr16:28847426-28847662(+)$1	236	25	28	9.0000
CCU	chr20:36151576-36151858(-)$1	282	158	161	9.0000
CCU	chr14:24114171-24114417(+)$1	246	46	49	9.0000
CCU	chr17:80193554-80193808(+)$1	254	36	39	9.0000
CCU	chr17:40271104-40271356(-)$1	252	70	73	9.0000
CCU	chr14:54421087-54421366(-)$1	279	237	240	9.0000
CCU	chr20:57467358-57467634(+)$1	276	14	17	9.0000
CCU	chr1:70687115-70687376(+)$1	261	19	22	9.0000
CCU	chr15:90349954-90350224(-)$1	270	0	3	9.0000
CCU	chr9:19378848-19379096(-)$1	248	118	121	9.0000
CCU	chr14:24911581-24911869(-)$1	288	8	11	9.0000
CCU	chr1:226053589-226053854(-)$1	265	4	7	9.0000
CCU	chr16:4863743-4864002(-)$1	259	14	17	9.0000
CCU	chr1:25568833-25569128(-)$1	295	40	43	9.0000
CCU	chr20:62589038-62589274(-)$1	236	68	71	9.0000
CCU	chr17:73127285-73127556(-)$1	271	18	21	9.0000
CCU	chr11:66394086-66394330(+)$1	244	7	10	9.0000
CCU	chr16:67977022-67977275(-)$1	253	42	45	9.0000
CCU	chr6:31937133-31937369(+)$1	236	71	74	9.0000
CCU	chr14:21967359-21967672(-)$1	313	239	242	9.0000
CCU	chr11:61634375-61634656(+)$1	281	41	44	9.0000
CCU	chr3:15901024-15901321(-)$1	297	163	166	9.0000

#otherMatches

#Struct PSSM
GGG	chr3:49052722-49052989(+)$1	267	4	7	9.0000
fff	chr17:7477038-7477283(+)$1	245	42	45	9.0000
$$$	chr3:58520198-58520513(-)$1	315	54	57	9.0000
:::	chr17:37883379-37883656(+)$1	277	14	17	9.0000
:CC	chr12:54106375-54106641(-)$1	266	38	41	9.0000
cc3	chr6:31638709-31638988(+)$1	279	161	164	9.0000
eee	chr22:32003726-32004024(+)$1	298	4	7	9.0000
$$$	chr19:2228265-2228507(+)$1	242	26	29	9.0000
HHH	chr14:23791212-23791416(+)$1	204	12	15	9.0000
!aq	chr14:24614890-24615199(-)$1	309	42	45	9.0000
eee	chr16:89805659-89805922(-)$1	263	20	23	9.0000
eee	chr3:49051481-49051733(+)$1	252	80	83	9.0000
B{C	chr5:179264827-179265087(-)$1	260	53	56	9.0000
eee	chr11:61109873-61110111(+)$1	238	22	25	9.0000
ggg	chr3:184100631-184100872(+)$1	241	4	7	9.0000
:CC	chr1:2327059-2327308(+)$1	249	0	3	9.0000
eee	chr5:52386506-52386748(+)$1	242	39	42	9.0000
iii	chr17:7477430-7477656(+)$1	226	70	73	9.0000
===	chr11:72534161-72534420(+)$1	259	47	50	9.0000
ggg	chr2:216177027-216177307(+)$1	280	4	7	9.0000
HHH	chr16:2581166-2581421(+)$1	255	1	4	9.0000
eee	chr19:5933405-5933653(-)$1	248	43	46	9.0000
FFF	chr17:56082934-56083222(-)$1	288	14	17	9.0000
cc[	chr17:7481323-7481559(+)$1	236	25	28	9.0000
fff	chr17:7477394-7477630(+)$1	236	11	14	9.0000
eee	chr5:172755102-172755394(-)$1	292	42	45	9.0000
dd9	chr19:54971742-54971991(+)$1	249	153	156	9.0000
eee	chr17:62498269-62498494(-)$1	225	157	160	9.0000
EEE	chr17:7477340-7477585(+)$1	245	14	17	9.0000
rrr	chr16:89724493-89724758(+)$1	265	114	117	9.0000
CLL	chr17:42398546-42398801(-)$1	255	17	20	9.0000
eee	chr17:2593182-2593453(-)$1	271	39	42	9.0000
BBe	chr3:48670988-48671252(-)$1	264	11	14	9.0000
:::	chr11:85374568-85374811(-)$1	243	1	4	9.0000
!!e	chrX:128581116-128581365(-)$1	249	82	85	9.0000
!!f	chr17:79211180-79211444(-)$1	264	14	17	9.0000
ddd	chr16:28847426-28847662(+)$1	236	25	28	9.0000
ddd	chr20:36151576-36151858(-)$1	282	158	161	9.0000
KKC	chr14:24114171-24114417(+)$1	246	46	49	9.0000
fff	chr17:80193554-80193808(+)$1	254	36	39	9.0000
ooo	chr17:40271104-40271356(-)$1	252	70	73	9.0000
III	chr14:54421087-54421366(-)$1	279	237	240	9.0000
eee	chr20:57467358-57467634(+)$1	276	14	17	9.0000
UUU	chr1:70687115-70687376(+)$1	261	19	22	9.0000
:::	chr15:90349954-90350224(-)$1	270	0	3	9.0000
hhh	chr9:19378848-19379096(-)$1	248	118	121	9.0000
ooo	chr14:24911581-24911869(-)$1	288	8	11	9.0000
EKK	chr1:226053589-226053854(-)$1	265	4	7	9.0000
III	chr16:4863743-4864002(-)$1	259	14	17	9.0000
{DD	chr1:25568833-25569128(-)$1	295	40	43	9.0000
fff	chr20:62589038-62589274(-)$1	236	68	71	9.0000
CC:	chr17:73127285-73127556(-)$1	271	18	21	9.0000
CKK	chr11:66394086-66394330(+)$1	244	7	10	9.0000
ccc	chr16:67977022-67977275(-)$1	253	42	45	9.0000
!!e	chr6:31937133-31937369(+)$1	236	71	74	9.0000
HHH	chr14:21967359-21967672(-)$1	313	239	242	9.0000
ddd	chr11:61634375-61634656(+)$1	281	41	44	9.0000
fff	chr3:15901024-15901321(-)$1	297	163	166	9.0000

#DB
(((	chr3:49052722-49052989(+)$1	1	4	7	9.0000
(((	chr17:7477038-7477283(+)$1	1	42	45	9.0000
...	chr3:58520198-58520513(-)$1	1	54	57	9.0000
...	chr17:37883379-37883656(+)$1	1	14	17	9.0000
.((	chr12:54106375-54106641(-)$1	1	38	41	9.0000
)).	chr6:31638709-31638988(+)$1	1	161	164	9.0000
(((	chr22:32003726-32004024(+)$1	1	4	7	9.0000
...	chr19:2228265-2228507(+)$1	1	26	29	9.0000
(((	chr14:23791212-23791416(+)$1	1	12	15	9.0000
.(.	chr14:24614890-24615199(-)$1	1	42	45	9.0000
(((	chr16:89805659-89805922(-)$1	1	20	23	9.0000
)))	chr3:49051481-49051733(+)$1	1	80	83	9.0000
(.(	chr5:179264827-179265087(-)$1	1	53	56	9.0000
(((	chr11:61109873-61110111(+)$1	1	22	25	9.0000
(((	chr3:184100631-184100872(+)$1	1	4	7	9.0000
.((	chr1:2327059-2327308(+)$1	1	0	3	9.0000
(((	chr5:52386506-52386748(+)$1	1	39	42	9.0000
(((	chr17:7477430-7477656(+)$1	1	70	73	9.0000
(((	chr11:72534161-72534420(+)$1	1	47	50	9.0000
(((	chr2:216177027-216177307(+)$1	1	4	7	9.0000
(((	chr16:2581166-2581421(+)$1	1	1	4	9.0000
(((	chr19:5933405-5933653(-)$1	1	43	46	9.0000
(((	chr17:56082934-56083222(-)$1	1	14	17	9.0000
((.	chr17:7481323-7481559(+)$1	1	25	28	9.0000
)))	chr17:7477394-7477630(+)$1	1	11	14	9.0000
(((	chr5:172755102-172755394(-)$1	1	42	45	9.0000
)).	chr19:54971742-54971991(+)$1	1	153	156	9.0000
)))	chr17:62498269-62498494(-)$1	1	157	160	9.0000
(((	chr17:7477340-7477585(+)$1	1	14	17	9.0000
...	chr16:89724493-89724758(+)$1	1	114	117	9.0000
(..	chr17:42398546-42398801(-)$1	1	17	20	9.0000
(((	chr17:2593182-2593453(-)$1	1	39	42	9.0000
(((	chr3:48670988-48671252(-)$1	1	11	14	9.0000
...	chr11:85374568-85374811(-)$1	1	1	4	9.0000
..(	chrX:128581116-128581365(-)$1	1	82	85	9.0000
..(	chr17:79211180-79211444(-)$1	1	14	17	9.0000
)))	chr16:28847426-28847662(+)$1	1	25	28	9.0000
(((	chr20:36151576-36151858(-)$1	1	158	161	9.0000
..(	chr14:24114171-24114417(+)$1	1	46	49	9.0000
)))	chr17:80193554-80193808(+)$1	1	36	39	9.0000
...	chr17:40271104-40271356(-)$1	1	70	73	9.0000
)))	chr14:54421087-54421366(-)$1	1	237	240	9.0000
(((	chr20:57467358-57467634(+)$1	1	14	17	9.0000
...	chr1:70687115-70687376(+)$1	1	19	22	9.0000
...	chr15:90349954-90350224(-)$1	1	0	3	9.0000
(((	chr9:19378848-19379096(-)$1	1	118	121	9.0000
...	chr14:24911581-24911869(-)$1	1	8	11	9.0000
(..	chr1:226053589-226053854(-)$1	1	4	7	9.0000
(((	chr16:4863743-4864002(-)$1	1	14	17	9.0000
.((	chr1:25568833-25569128(-)$1	1	40	43	9.0000
)))	chr20:62589038-62589274(-)$1	1	68	71	9.0000
((.	chr17:73127285-73127556(-)$1	1	18	21	9.0000
(..	chr11:66394086-66394330(+)$1	1	7	10	9.0000
(((	chr16:67977022-67977275(-)$1	1	42	45	9.0000
..(	chr6:31937133-31937369(+)$1	1	71	74	9.0000
)))	chr14:21967359-21967672(-)$1	1	239	242	9.0000
)))	chr11:61634375-61634656(+)$1	1	41	44	9.0000
)))	chr3:15901024-15901321(-)$1	1	163	166	9.0000

#PSSM
C : 0.96	c : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	

#score	522.0000000000002
#seq	58
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_transcript_m1_run1.nuc.txt

#NT
Cuguggg	chr7:158158917-158159247(-)$1	330	89	96	14.8181
CUGGGAG	chr14:24108909-24109114(+)$1	205	35	42	13.9090
CUGGGGG	chr19:3490755-3491093(-)$1	338	126	133	17.6363
CUGGAGG	chr11:66112842-66113094(-)$1	252	129	136	14.5454
CUGGGGG	chr3:183353815-183354076(+)$1	261	66	73	17.6363
CUGUGGG	chr1:44088661-44088914(+)$1	253	64	71	14.8181
CUGGGAG	chr16:1749167-1749456(+)$1	289	11	18	13.9090
CUGGGGG	chr3:5229660-5229924(+)$1	264	17	24	17.6363
CUGGGGG	chr3:183911522-183911856(+)$1	334	175	182	17.6363
CUGGGGG	chr19:40330995-40331255(-)$1	260	250	257	17.6363
CUGGGUG	chr19:34991490-34991810(+)$1	320	18	25	13.8181
CUGGGAG	chr17:80348085-80348362(-)$1	277	12	19	13.9090
cuguggg	chr19:42881924-42882234(+)$1	310	233	240	14.8181
CUGGGGG	chr3:48466994-48467277(-)$1	283	246	253	17.6363
CUGGGGG	chr15:59063581-59063877(+)$1	296	172	179	17.6363
CUGUGGG	chr9:136229402-136229614(-)$1	212	102	109	14.8181
CUGCGGG	chr7:100414755-100415031(-)$1	276	109	116	14.3636
CUGGAGG	chr17:78093358-78093675(+)$1	317	1	8	14.5454
CUGGGGG	chr11:61108894-61109181(+)$1	287	222	229	17.6363
CUGGGGG	chr10:104158424-104158722(+)$1	298	158	165	17.6363
CUGGGGG	chr2:242707318-242707603(+)$1	285	94	101	17.6363
cuggggg	chr1:178994929-178995246(+)$1	317	189	196	17.6363
CUGCGGG	chr2:183902892-183903271(-)$1	379	66	73	14.3636
CUGGGUG	chr21:47560525-47560801(-)$1	276	230	237	13.8181
CUGGAGG	chr5:151183433-151183714(+)$1	281	109	116	14.5454
CUGGAGG	chr22:50873138-50873418(+)$1	280	30	37	14.5454
CUGGUGG	chr11:2965652-2965973(-)$1	321	125	132	14.0000
CUGGUGG	chr17:80348010-80348285(-)$1	275	19	26	14.0000
CUGUGGG	chr9:136627697-136628053(-)$1	356	107	114	14.8181
CUGGGGG	chr4:3768317-3768581(+)$1	264	129	136	17.6363
CUGGGGG	chr4:129208622-129208894(-)$1	272	144	151	17.6363
CUGUGGG	chr16:88718527-88718805(-)$1	278	5	12	14.8181
CUGCGGG	chr7:76022807-76023134(-)$1	327	8	15	14.3636
CUGGGGG	chr20:61460879-61461120(+)$1	241	32	39	17.6363
CUGAGGG	chr20:17639557-17639774(-)$1	217	66	73	14.5454
CUGGGGG	chr14:24774564-24774889(+)$1	325	8	15	17.6363
CUGUGGG	chr2:113418001-113418250(+)$1	249	80	87	14.8181
CUGGGAG	chr9:136229486-136229720(-)$1	234	17	24	13.9090
CUGUGGG	chrM:14211-14416(-)$1	205	51	58	14.8181
CUGGAGG	chr6:31602443-31602720(+)$1	277	210	217	14.5454
cugaggg	chr14:103523569-103523889(-)$1	320	98	105	14.5454
CUGAGGG	chr2:70488243-70488516(+)$1	273	10	17	14.5454
CUGGUGG	chr11:85779686-85780028(-)$1	342	46	53	14.0000
CUGGAGG	chr19:17513808-17514077(-)$1	269	79	86	14.5454
CUGGAGG	chr2:27306040-27306335(+)$1	295	106	113	14.5454
CUGGGGG	chr12:111798867-111799106(-)$1	239	144	151	17.6363
CUGGGGG	chr11:65770653-65770919(+)$1	266	252	259	17.6363
CUGGGAG	chr11:70865499-70865849(-)$1	350	31	38	13.9090
CUGGAGG	chr3:124515404-124515693(-)$1	289	122	129	14.5454
CUGGGUG	chr21:47560315-47560573(-)$1	258	2	9	13.8181
CUGGGGG	chr17:74077673-74077969(-)$1	296	7	14	17.6363
CUGGAGG	chr17:46137221-46137505(+)$1	284	52	59	14.5454
CUGGGUG	chr12:57588220-57588453(+)$1	233	7	14	13.8181
CUGAGGG	chr20:17639585-17639819(-)$1	234	111	118	14.5454

#otherMatches

#Struct PSSM
nnnneee	chr17:42271081-42271347(-)$1	266	81	88	14.5454
ggggggi	chr7:158158917-158159247(-)$1	330	89	96	14.8181
cccffff	chr14:24108909-24109114(+)$1	205	35	42	13.9090
HH}BBZZ	chr19:3490755-3491093(-)$1	338	126	133	17.6363
ccc!!gg	chr11:66112842-66113094(-)$1	252	129	136	14.5454
ccc[bbm	chr3:183353815-183354076(+)$1	261	66	73	17.6363
dd22fff	chr1:44088661-44088914(+)$1	253	64	71	14.8181
=====[a	chr16:1749167-1749456(+)$1	289	11	18	13.9090
hhhhhoo	chr3:5229660-5229924(+)$1	264	17	24	17.6363
"gggggg	chr3:183911522-183911856(+)$1	334	175	182	17.6363
FFFFZZZ	chr19:40330995-40331255(-)$1	260	250	257	17.6363
ggggggA	chr19:34991490-34991810(+)$1	320	18	25	13.8181
LCCC{EE	chr17:80348085-80348362(-)$1	277	12	19	13.9090
ppppddd	chr19:42881924-42882234(+)$1	310	233	240	14.8181
eeeefff	chr3:48466994-48467277(-)$1	283	246	253	17.6363
EEEEZZZ	chr15:59063581-59063877(+)$1	296	172	179	17.6363
cccmmmm	chr9:136229402-136229614(-)$1	212	102	109	14.8181
eeee]ff	chr7:100414755-100415031(-)$1	276	109	116	14.3636
::ggggg	chr17:78093358-78093675(+)$1	317	1	8	14.5454
=======	chr11:61108894-61109181(+)$1	287	222	229	17.6363
ff[bbpp	chr10:104158424-104158722(+)$1	298	158	165	17.6363
accc]bb	chr2:242707318-242707603(+)$1	285	94	101	17.6363
ee]a::f	chr1:178994929-178995246(+)$1	317	189	196	17.6363
ggeeeee	chr2:183902892-183903271(-)$1	379	66	73	14.3636
[cccooo	chr21:47560525-47560801(-)$1	276	230	237	13.8181
eeee]cc	chr5:151183433-151183714(+)$1	281	109	116	14.5454
g[a"""c	chr22:50873138-50873418(+)$1	280	30	37	14.5454
22iiiii	chr11:2965652-2965973(-)$1	321	125	132	14.0000
ggeeeee	chr17:80348010-80348285(-)$1	275	19	26	14.0000
FFFFF::	chr9:136627697-136628053(-)$1	356	107	114	14.8181
gggggg=	chr4:3768317-3768581(+)$1	264	129	136	17.6363
HHH::dd	chr4:129208622-129208894(-)$1	272	144	151	17.6363
ddmmmmd	chr16:88718527-88718805(-)$1	278	5	12	14.8181
{A{CCC{	chr7:76022807-76023134(-)$1	327	8	15	14.3636
DDDDhhh	chr20:61460879-61461120(+)$1	241	32	39	17.6363
cc22bbf	chr20:17639557-17639774(-)$1	217	66	73	14.5454
bmmmmbb	chr14:24774564-24774889(+)$1	325	8	15	17.6363
:::::hh	chr2:113418001-113418250(+)$1	249	80	87	14.8181
c[dddd[	chr9:136229486-136229720(-)$1	234	17	24	13.9090
dd[bb[c	chrM:14211-14416(-)$1	205	51	58	14.8181
b[bb[bb	chr6:31602443-31602720(+)$1	277	210	217	14.5454
fff]===	chr14:103523569-103523889(-)$1	320	98	105	14.5454
"cccccc	chr2:70488243-70488516(+)$1	273	10	17	14.5454
bb]ccc3	chr11:85779686-85780028(-)$1	342	46	53	14.0000
iiiiiii	chr19:17513808-17514077(-)$1	269	79	86	14.5454
dddd22g	chr2:27306040-27306335(+)$1	295	106	113	14.5454
iiiiiii	chr12:111798867-111799106(-)$1	239	144	151	17.6363
ooooogg	chr11:65770653-65770919(+)$1	266	252	259	17.6363
DDDBBKK	chr11:70865499-70865849(-)$1	350	31	38	13.9090
::bb[cc	chr3:124515404-124515693(-)$1	289	122	129	14.5454
CC{CCCK	chr21:47560315-47560573(-)$1	258	2	9	13.8181
CCCKKGG	chr17:74077673-74077969(-)$1	296	7	14	17.6363
bbqqqqq	chr17:46137221-46137505(+)$1	284	52	59	14.5454
ggggggg	chr12:57588220-57588453(+)$1	233	7	14	13.8181
cc22bbf	chr20:17639585-17639819(-)$1	234	111	118	14.5454

#DB
....)))	chr17:42271081-42271347(-)$1	1	81	88	14.5454
)))))))	chr7:158158917-158159247(-)$1	1	89	96	14.8181
(((((((	chr14:24108909-24109114(+)$1	1	35	42	13.9090
)).))..	chr19:3490755-3491093(-)$1	1	126	133	17.6363
(((..((	chr11:66112842-66113094(-)$1	1	129	136	14.5454
(((.((.	chr3:183353815-183354076(+)$1	1	66	73	17.6363
))..)))	chr1:44088661-44088914(+)$1	1	64	71	14.8181
(((((.(	chr16:1749167-1749456(+)$1	1	11	18	13.9090
(((((..	chr3:5229660-5229924(+)$1	1	17	24	17.6363
.((((((	chr3:183911522-183911856(+)$1	1	175	182	17.6363
))))...	chr19:40330995-40331255(-)$1	1	250	257	17.6363
))))))(	chr19:34991490-34991810(+)$1	1	18	25	13.8181
.(((.((	chr17:80348085-80348362(-)$1	1	12	19	13.9090
....)))	chr19:42881924-42882234(+)$1	1	233	240	14.8181
(((((((	chr3:48466994-48467277(-)$1	1	246	253	17.6363
))))...	chr15:59063581-59063877(+)$1	1	172	179	17.6363
(((....	chr9:136229402-136229614(-)$1	1	102	109	14.8181
)))).))	chr7:100414755-100415031(-)$1	1	109	116	14.3636
..(((((	chr17:78093358-78093675(+)$1	1	1	8	14.5454
)))))))	chr11:61108894-61109181(+)$1	1	222	229	17.6363
((.((..	chr10:104158424-104158722(+)$1	1	158	165	17.6363
)))).))	chr2:242707318-242707603(+)$1	1	94	101	17.6363
)).)..(	chr1:178994929-178995246(+)$1	1	189	196	17.6363
)))))))	chr2:183902892-183903271(-)$1	1	66	73	14.3636
.(((...	chr21:47560525-47560801(-)$1	1	230	237	13.8181
)))).))	chr5:151183433-151183714(+)$1	1	109	116	14.5454
(.(...(	chr22:50873138-50873418(+)$1	1	30	37	14.5454
..)))))	chr11:2965652-2965973(-)$1	1	125	132	14.0000
(((((((	chr17:80348010-80348285(-)$1	1	19	26	14.0000
(((((..	chr9:136627697-136628053(-)$1	1	107	114	14.8181
))))))(	chr4:3768317-3768581(+)$1	1	129	136	17.6363
)))..((	chr4:129208622-129208894(-)$1	1	144	151	17.6363
((....)	chr16:88718527-88718805(-)$1	1	5	12	14.8181
.(.(((.	chr7:76022807-76023134(-)$1	1	8	15	14.3636
(((((((	chr20:61460879-61461120(+)$1	1	32	39	17.6363
))..)))	chr20:17639557-17639774(-)$1	1	66	73	14.5454
(....))	chr14:24774564-24774889(+)$1	1	8	15	17.6363
.....((	chr2:113418001-113418250(+)$1	1	80	87	14.8181
(.((((.	chr9:136229486-136229720(-)$1	1	17	24	13.9090
((.((.(	chrM:14211-14416(-)$1	1	51	58	14.8181
(.((.((	chr6:31602443-31602720(+)$1	1	210	217	14.5454
))).)))	chr14:103523569-103523889(-)$1	1	98	105	14.5454
.((((((	chr2:70488243-70488516(+)$1	1	10	17	14.5454
)).))).	chr11:85779686-85780028(-)$1	1	46	53	14.0000
(((((((	chr19:17513808-17514077(-)$1	1	79	86	14.5454
))))..)	chr2:27306040-27306335(+)$1	1	106	113	14.5454
(((((((	chr12:111798867-111799106(-)$1	1	144	151	17.6363
.....))	chr11:65770653-65770919(+)$1	1	252	259	17.6363
(((((..	chr11:70865499-70865849(-)$1	1	31	38	13.9090
..((.((	chr3:124515404-124515693(-)$1	1	122	129	14.5454
((.(((.	chr21:47560315-47560573(-)$1	1	2	9	13.8181
(((..((	chr17:74077673-74077969(-)$1	1	7	14	17.6363
((.....	chr17:46137221-46137505(+)$1	1	52	59	14.5454
(((((((	chr12:57588220-57588453(+)$1	1	7	14	13.8181
))..)))	chr20:17639585-17639819(-)$1	1	111	118	14.5454

#PSSM
C : 0.94	c : 0.05	
U : 0.92	u : 0.07	
G : 0.92	g : 0.07	
G : 0.69	U : 0.10	A : 0.07	C : 0.05	u : 0.03	g : 0.01	a : 0.01	
G : 0.70	A : 0.16	g : 0.07	U : 0.05	
G : 0.76	A : 0.09	g : 0.07	U : 0.07	
G : 0.92	g : 0.07	

#score	849.5454545454543
#seq	55
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_UTR_m2_run1.nuc.txt

#NT
uguguaugucugugugugug	chr3:51699711-51699997(+)$1	286	107	127	41.6666
ugugugugugcgugucugug	chr16:85009172-85009462(-)$1	290	99	119	41.5686
UAUGUGUGUGUGUGUGUGCG	chr2:96850593-96850845(-)$1	252	40	60	41.7647
ugagugUGAGCGUGUGUGUG	chr13:26828202-26828524(+)$1	322	130	150	37.2549
UGUGUGGAUGUGCGUGUGUG	chrX:152961462-152961683(+)$1	221	121	141	39.4117
UGUGUGGAUGUGCGUGUGUG	chrX:152961483-152961690(+)$1	207	100	120	39.4117
ugugugugugugugugugug	chr17:40462646-40462887(+)$1	241	150	170	50.0000
UAUGUGUGUGUGUGUGUGCG	chr2:96850662-96850867(-)$1	205	62	82	41.7647
UGUGUGUGUGUGCCCGUGUG	chr17:80201876-80202124(-)$1	248	98	118	38.4313
uguguguguguguaucugug	chr5:149233763-149234036(+)$1	273	131	151	41.6666
ugugugugugugugugugug	chr17:40462621-40462846(+)$1	225	175	195	50.0000
uguguguauauguguguaug	chr1:39469948-39470221(+)$1	273	119	139	38.0392
uguguguguguguaugugug	chr12:50872102-50872352(+)$1	250	2	22	46.0784
uaugugugugugggugugug	chr6:43148910-43149138(+)$1	228	144	164	42.6470
uguguguaugugugugugug	chr6:160101207-160101549(-)$1	342	97	117	46.5686
ugugugugccugugugugug	chr16:89980348-89980643(+)$1	295	1	21	41.9607
uguguguguaucugugcgug	chr20:584815-585080(-)$1	265	99	119	37.1568
AGAGUGUGUGUUUGUGUGUG	chr13:98118142-98118414(+)$1	272	112	132	37.0588
UGUAUCUGUGUGAGUGUGUG	chr9:36339097-36339453(-)$1	356	138	158	37.0588
UGUGUUUGUGUGCGUGAGUG	chr5:86563880-86564181(+)$1	301	102	122	38.2352
UAUGUGUGUGCGUGUGUAUG	chr6:7289697-7289974(-)$1	277	95	115	37.6470
ugugugugugugugugugug	chr17:40462687-40462977(+)$1	290	109	129	50.0000
ugugugugugugugugugug	chr18:43432101-43432369(-)$1	268	101	121	50.0000
ugugugugugugugugugug	chr1:228365611-228365883(+)$1	272	97	117	50.0000
ugugugugagugcgugugug	chr10:104240321-104240637(-)$1	316	105	125	42.8431
UCUGUGUGUGGGGGUGUGUG	chr1:47697236-47697467(-)$1	231	136	156	38.2352
AGUGUGUAUGUGUAUGUGUG	chr5:176563871-176564186(+)$1	315	99	119	38.6274
ugugugugugugugugugug	chr10:72639102-72639421(+)$1	319	34	54	50.0000
GGGgugugugugugugugug	chr5:14697064-14697345(+)$1	281	88	108	41.0784
ugugugaguguaugugugug	chr1:53712501-53712729(-)$1	228	137	157	41.2745
UGUGUGGAUGUGCGUGUGUG	chrX:152961570-152961785(+)$1	215	13	33	39.4117
Aguguguaugugugugugug	chr15:41773366-41773635(+)$1	269	105	125	42.5490
CGUGUGUGUGCGUGUGUGUG	chr16:84157521-84157786(-)$1	265	100	120	41.6666
ucugugugugugcaugugug	chr7:99951346-99951589(+)$1	243	100	120	39.3137
UCuguguguguaugugugug	chr1:53711976-53712217(-)$1	241	117	137	41.8627
ugugugucugucugugugug	chr10:94451768-94452019(+)$1	251	120	140	41.7647
uguguguguaugugugagug	chr7:129395182-129395465(+)$1	283	120	140	41.5686
agugugugugugugagugug	chr4:80147131-80147417(+)$1	286	108	128	41.7647
UGUGCGUGUGAGUGUGUGUG	chr1:111983506-111983751(-)$1	245	110	130	41.2745
ugugcgcgcgugugugugug	chr20:61519847-61520148(-)$1	301	122	142	37.1568
UGUGUGUGUCUGCAUGUGUG	chr16:56977382-56977684(+)$1	302	128	148	39.1176
UUUGUUUCugugugugugug	chr1:42643307-42643573(-)$1	266	86	106	37.8431
ugugugugugugugcgugug	chr16:89980237-89980548(+)$1	311	76	96	45.6862
UUUGCGUGUGUGUGUGUGUA	chr5:140085295-140085544(+)$1	249	90	110	36.9607
uguguauguguguguaugug	chr12:110785272-110785537(+)$1	265	95	115	41.2745
uguguguguguguguaugug	chr12:74934799-74935070(+)$1	271	111	131	45.5882
uguguguguguguguguguC	chr10:102308741-102308996(+)$1	255	100	120	45.2941
UGUgugugugugugagugag	chr14:65568998-65569316(-)$1	318	107	127	41.1764
ugugugugcaugugugugug	chr1:27181258-27181472(+)$1	214	72	92	42.0588
UGUGUGUGCGUGCGAGUGUG	chr5:138089858-138090175(+)$1	317	103	123	38.8235

#otherMatches

#Struct PSSM
3ddddffffff]bb:fffff	chr19:46970427-46970700(-)$1	273	90	110	50.0000
hhhhhhh]dddd::::::::	chr3:51699711-51699997(+)$1	286	107	127	41.6666
CCC{BBFFFFFF{CCC{CCC	chr16:85009172-85009462(-)$1	290	99	119	41.5686
:::================q	chr2:96850593-96850845(-)$1	252	40	60	41.7647
:::::CCC}BB}CCC}JJJJ	chr13:26828202-26828524(+)$1	322	130	150	37.2549
a]ccceeeee[eeeee[a[f	chrX:152961462-152961683(+)$1	221	121	141	39.4117
a]ggggggg22bbCCC}DDD	chrX:152961483-152961690(+)$1	207	100	120	39.4117
mmm============]ccce	chr17:40462646-40462887(+)$1	241	150	170	50.0000
::=================q	chr2:96850662-96850867(-)$1	205	62	82	41.7647
ddqqqqqqqqddddbb4444	chr17:80201876-80202124(-)$1	248	98	118	38.4313
==============mmmm==	chr5:149233763-149234036(+)$1	273	131	151	41.6666
mmm============]ccce	chr17:40462621-40462846(+)$1	225	175	195	50.0000
dddmmmmdddd55555====	chr1:39469948-39470221(+)$1	273	119	139	38.0392
dddd[iiiiiiiii[ddddn	chr12:50872102-50872352(+)$1	250	2	22	46.0784
e333==========]dddd]	chr6:43148910-43149138(+)$1	228	144	164	42.6470
==========qqqqqqqq==	chr6:160101207-160101549(-)$1	342	97	117	46.5686
:hhhhhhhhannnnna]hhh	chr16:89980348-89980643(+)$1	295	1	21	41.9607
BB}CCC::IIIIIIIII{A:	chr20:584815-585080(-)$1	265	99	119	37.1568
JJJJJLLLBB:::eeeee[c	chr13:98118142-98118414(+)$1	272	112	132	37.0588
]ccc]ffffff22bb]cccb	chr9:36339097-36339453(-)$1	356	138	158	37.0588
hhmmmmhhhhhhhh]eeeee	chr5:86563880-86564181(+)$1	301	102	122	38.2352
>>>ccc]eeeee]ffffff:	chr6:7289697-7289974(-)$1	277	95	115	37.6470
mmm============]ccce	chr17:40462687-40462977(+)$1	290	109	129	50.0000
##dddd[ccc++++++++++	chr18:43432101-43432369(-)$1	268	101	121	50.0000
0000000bbggggggg]bb:	chr1:228365611-228365883(+)$1	272	97	117	50.0000
{BBKKCCC{BBiiiiiiiii	chr10:104240321-104240637(-)$1	316	105	125	42.8431
ccc]ccchhhhhhhhnnnnn	chr1:47697236-47697467(-)$1	231	136	156	38.2352
d============ppppppp	chr5:176563871-176564186(+)$1	315	99	119	38.6274
:::CCC{DDDD{CCC{BB{C	chr10:72639102-72639421(+)$1	319	34	54	50.0000
=========[dddd!!ccch	chr5:14697064-14697345(+)$1	281	88	108	41.0784
ee333ggggggg]ggggggg	chr1:53712501-53712729(-)$1	228	137	157	41.2745
:::::eeeee[a[ddddfff	chrX:152961570-152961785(+)$1	215	13	33	39.4117
ggggeeeee+++++++++++	chr15:41773366-41773635(+)$1	269	105	125	42.5490
C{DDDD{BB{EEEEEhhhhh	chr16:84157521-84157786(-)$1	265	100	120	41.6666
ffff]bb22a]dddd]ffff	chr7:99951346-99951589(+)$1	243	100	120	39.3137
lffffffccchhhhhhhhmm	chr1:53711976-53712217(-)$1	241	117	137	41.8627
nnnnna]eeeeedddd[ggg	chr10:94451768-94452019(+)$1	251	120	140	41.7647
==========[eeeee[ddd	chr7:129395182-129395465(+)$1	283	120	140	41.5686
33bb]ccc]dddddddd"""	chr4:80147131-80147417(+)$1	286	108	128	41.7647
mmmffffffcccdddd[a[b	chr1:111983506-111983751(-)$1	245	110	130	41.2745
2a]================6	chr20:61519847-61520148(-)$1	301	122	142	37.1568
9hhhhhhhhffffff[dddd	chr16:56977382-56977684(+)$1	302	128	148	39.1176
))))))))============	chr1:42643307-42643573(-)$1	266	86	106	37.8431
iiiiiii]bb]a]bb333ff	chr16:89980237-89980548(+)$1	311	76	96	45.6862
rrrrrrrrrbb22a]bb]ee	chr5:140085295-140085544(+)$1	249	90	110	36.9607
FFFFFF:CCC{CCC:::fff	chr12:110785272-110785537(+)$1	265	95	115	41.2745
HHHHHHLLLCCC:::::::f	chr12:74934799-74935070(+)$1	271	111	131	45.5882
{EEEEELLLBBeeeeemmmm	chr10:102308741-102308996(+)$1	255	100	120	45.2941
FFF{CCCLLLCCCKKBBMMM	chr14:65568998-65569316(-)$1	318	107	127	41.1764
IIIIIIIgggggggssssss	chr1:27181258-27181472(+)$1	214	72	92	42.0588
2bb22ffffff]cccJJJJJ	chr5:138089858-138090175(+)$1	317	103	123	38.8235

#DB
.)))))))))).)).(((((	chr19:46970427-46970700(-)$1	1	90	110	50.0000
))))))).))))........	chr3:51699711-51699997(+)$1	1	107	127	41.6666
(((.((((((((.(((.(((	chr16:85009172-85009462(-)$1	1	99	119	41.5686
...((((((((((((((((.	chr2:96850593-96850845(-)$1	1	40	60	41.7647
.....))).)).))).))))	chr13:26828202-26828524(+)$1	1	130	150	37.2549
).)))(((((.(((((.(.(	chrX:152961462-152961683(+)$1	1	121	141	39.4117
).)))))))..))))).)))	chrX:152961483-152961690(+)$1	1	100	120	39.4117
...)))))))))))).))))	chr17:40462646-40462887(+)$1	1	150	170	50.0000
..(((((((((((((((((.	chr2:96850662-96850867(-)$1	1	62	82	41.7647
((........))))))....	chr17:80201876-80202124(-)$1	1	98	118	38.4313
((((((((((((((....))	chr5:149233763-149234036(+)$1	1	131	151	41.6666
...)))))))))))).))))	chr17:40462621-40462846(+)$1	1	175	195	50.0000
(((....)))).....))))	chr1:39469948-39470221(+)$1	1	119	139	38.0392
((((.(((((((((.((((.	chr12:50872102-50872352(+)$1	1	2	22	46.0784
)...)))))))))).)))).	chr6:43148910-43149138(+)$1	1	144	164	42.6470
((((((((((........))	chr6:160101207-160101549(-)$1	1	97	117	46.5686
.(((((((((.....).)))	chr16:89980348-89980643(+)$1	1	1	21	41.9607
)).)))..(((((((((.(.	chr20:584815-585080(-)$1	1	99	119	37.1568
(((((...((...(((((.(	chr13:98118142-98118414(+)$1	1	112	132	37.0588
.))).))))))..)).))))	chr9:36339097-36339453(-)$1	1	138	158	37.0588
((....)))))))).)))))	chr5:86563880-86564181(+)$1	1	102	122	38.2352
...))).))))).)))))).	chr6:7289697-7289974(-)$1	1	95	115	37.6470
...)))))))))))).))))	chr17:40462687-40462977(+)$1	1	109	129	50.0000
..((((.(((..........	chr18:43432101-43432369(-)$1	1	101	121	50.0000
.......))))))))).)).	chr1:228365611-228365883(+)$1	1	97	117	50.0000
.((..(((.(((((((((((	chr10:104240321-104240637(-)$1	1	105	125	42.8431
))).)))((((((((.....	chr1:47697236-47697467(-)$1	1	136	156	38.2352
)((((((((((((.......	chr5:176563871-176564186(+)$1	1	99	119	38.6274
...(((.((((.(((.((.(	chr10:72639102-72639421(+)$1	1	34	54	50.0000
(((((((((.((((..((((	chr5:14697064-14697345(+)$1	1	88	108	41.0784
))...))))))).)))))))	chr1:53712501-53712729(-)$1	1	137	157	41.2745
.....(((((.(.(((((((	chrX:152961570-152961785(+)$1	1	13	33	39.4117
(((((((((...........	chr15:41773366-41773635(+)$1	1	105	125	42.5490
(.((((.((.((((((((((	chr16:84157521-84157786(-)$1	1	100	120	41.6666
)))).))..).)))).))))	chr7:99951346-99951589(+)$1	1	100	120	39.3137
.)))))))))((((((((..	chr1:53711976-53712217(-)$1	1	117	137	41.8627
.....).)))))((((.(((	chr10:94451768-94452019(+)$1	1	120	140	41.7647
((((((((((.(((((.(((	chr7:129395182-129395465(+)$1	1	120	140	41.5686
..)).))).))))((((...	chr4:80147131-80147417(+)$1	1	108	128	41.7647
...))))))(((((((.(.(	chr1:111983506-111983751(-)$1	1	110	130	41.2745
.).)))))))))))))))).	chr20:61519847-61520148(-)$1	1	122	142	37.1568
.))))))))((((((.((((	chr16:56977382-56977684(+)$1	1	128	148	39.1176
........((((((((((((	chr1:42643307-42643573(-)$1	1	86	106	37.8431
))))))).)).).))...))	chr16:89980237-89980548(+)$1	1	76	96	45.6862
.........))..).)).))	chr5:140085295-140085544(+)$1	1	90	110	36.9607
((((((.(((.(((...(((	chr12:110785272-110785537(+)$1	1	95	115	41.2745
((((((...(((.......(	chr12:74934799-74935070(+)$1	1	111	131	45.5882
.(((((...(((((((....	chr10:102308741-102308996(+)$1	1	100	120	45.2941
(((.(((...(((..((...	chr14:65568998-65569316(-)$1	1	107	127	41.1764
((((((((((((((......	chr1:27181258-27181472(+)$1	1	72	92	42.0588
.))..)))))).)))(((((	chr5:138089858-138090175(+)$1	1	103	123	38.8235

#PSSM
u : 0.54	U : 0.33	A : 0.05	G : 0.01	C : 0.01	a : 0.01	
g : 0.54	G : 0.27	A : 0.05	C : 0.03	U : 0.03	a : 0.01	c : 0.01	
u : 0.58	U : 0.35	a : 0.01	A : 0.01	G : 0.01	
g : 0.64	G : 0.33	A : 0.01	
u : 0.62	U : 0.31	C : 0.03	c : 0.01	
g : 0.60	G : 0.29	a : 0.03	U : 0.03	C : 0.01	
u : 0.58	U : 0.31	G : 0.05	a : 0.01	c : 0.01	
g : 0.54	G : 0.27	A : 0.07	a : 0.05	c : 0.01	C : 0.01	
u : 0.56	U : 0.31	c : 0.05	A : 0.01	a : 0.01	C : 0.01	
g : 0.52	G : 0.33	a : 0.07	c : 0.03	C : 0.01	
u : 0.62	U : 0.25	C : 0.05	c : 0.01	G : 0.01	A : 0.01	
g : 0.56	G : 0.33	c : 0.03	a : 0.03	U : 0.01	
u : 0.58	U : 0.17	C : 0.13	c : 0.03	g : 0.01	A : 0.01	G : 0.01	
g : 0.58	G : 0.29	a : 0.05	A : 0.03	C : 0.01	
u : 0.58	U : 0.31	a : 0.03	C : 0.01	c : 0.01	A : 0.01	
g : 0.56	G : 0.35	c : 0.03	a : 0.03	
u : 0.60	U : 0.33	c : 0.01	A : 0.01	a : 0.01	
g : 0.62	G : 0.33	a : 0.01	A : 0.01	
u : 0.62	U : 0.31	C : 0.03	a : 0.01	
g : 0.62	G : 0.33	A : 0.01	C : 0.01	

#score	2139.6078431372553
#seq	51
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_UTR_m2_run2.nuc.txt

#NT
UUUUU	chr10:88810184-88810444(-)$1	260	92	97	15.0000
UUUUU	chr12:111886610-111886915(+)$1	305	156	161	15.0000
UUUUU	chr22:19956306-19956567(+)$1	261	127	132	15.0000
UUUUU	chr4:77956855-77957221(+)$1	366	166	171	15.0000
UUUUU	chr3:183889211-183889470(+)$1	259	106	111	15.0000
UUUUU	chr9:86584797-86585053(-)$1	256	48	53	15.0000
UUUUU	chr1:54512960-54513227(-)$1	267	46	51	15.0000
UUUUU	chr10:60158420-60158732(+)$1	312	5	10	15.0000
UUUUU	chr12:30872369-30872641(-)$1	272	124	129	15.0000
UUUUU	chr5:148884498-148884857(-)$1	359	108	113	15.0000
uuuuu	chr1:193222622-193222923(+)$1	301	7	12	15.0000
UUUUU	chr9:123942860-123943139(-)$1	279	71	76	15.0000
UUUUU	chr2:209169984-209170301(+)$1	317	300	305	15.0000
UUUUU	chr1:150117232-150117502(+)$1	270	193	198	15.0000
UUUUU	chr9:86584384-86584720(-)$1	336	192	197	15.0000
UUUUU	chr1:117645209-117645484(+)$1	275	38	43	15.0000
UUUUU	chr1:78482651-78482957(+)$1	306	65	70	15.0000
UUUUU	chr3:176741351-176741741(-)$1	390	248	253	15.0000
UUUUU	chr12:112443466-112443782(-)$1	316	92	97	15.0000
uuuuu	chr2:149449363-149449618(+)$1	255	130	135	15.0000
UUUUU	chr12:67706371-67706745(+)$1	374	349	354	15.0000
UUUUU	chr21:30718137-30718487(+)$1	350	105	110	15.0000
UUUUU	chr12:54678090-54678346(+)$1	256	24	29	15.0000
UUUUU	chr7:86792276-86792592(+)$1	316	11	16	15.0000
uuuuu	chr2:149449603-149449895(+)$1	292	39	44	15.0000
UUUUU	chr3:56656043-56656323(-)$1	280	147	152	15.0000
UUUUU	chr14:97001018-97001322(+)$1	304	99	104	15.0000
UUUUU	chr1:198291199-198291472(+)$1	273	156	161	15.0000
UUUUU	chr2:152659020-152659287(-)$1	267	201	206	15.0000
UUUUU	chr4:73941036-73941324(-)$1	288	18	23	15.0000
UUUUU	chr11:17110920-17111192(-)$1	272	14	19	15.0000
uuuuu	chr22:26931829-26932071(-)$1	242	103	108	15.0000
UUUUU	chr16:69737618-69737881(+)$1	263	38	43	15.0000
UUUUU	chr14:31086835-31087174(+)$1	339	99	104	15.0000
UUUUU	chr3:183704475-183704764(-)$1	289	19	24	15.0000
UUUUU	chr7:140424882-140425179(-)$1	297	83	88	15.0000
UUUUU	chr7:77569619-77569927(+)$1	308	92	97	15.0000
UUUUU	chr14:69846787-69847020(-)$1	233	192	197	15.0000
UUUUU	chr13:98046116-98046408(+)$1	292	275	280	15.0000
uuuuu	chr7:158433534-158433829(-)$1	295	1	6	15.0000
UUUUU	chr6:157739430-157739739(-)$1	309	107	112	15.0000
UUUUU	chr12:70731238-70731542(+)$1	304	91	96	15.0000
UUUUU	chr10:93622933-93623245(+)$1	312	18	23	15.0000
uuuuu	chr18:2582383-2582715(+)$1	332	21	26	15.0000
UUUUU	chr2:85547883-85548195(-)$1	312	26	31	15.0000
UUUUU	chr7:64293548-64293841(+)$1	293	195	200	15.0000
UUUUU	chr7:26230805-26231129(-)$1	324	234	239	15.0000
UUUUU	chr15:42834648-42834950(-)$1	302	98	103	15.0000
uuuuu	chr11:3011918-3012192(-)$1	274	200	205	15.0000
UUUUU	chr14:21461889-21462202(+)$1	313	51	56	15.0000
UUUUU	chr8:62588111-62588421(-)$1	310	217	222	15.0000
UUUUU	chr1:47143916-47144204(-)$1	288	227	232	15.0000
UUUUU	chr21:40717930-40718140(-)$1	210	173	178	15.0000
uuuuu	chr2:149449306-149449563(+)$1	257	15	20	15.0000
UUUUU	chr6:108365477-108365790(-)$1	313	150	155	15.0000
UUUUU	chr21:36259457-36259693(-)$1	236	17	22	15.0000
UUUUU	chr8:67543396-67543706(-)$1	310	12	17	15.0000
UUUUU	chr6:163994664-163994985(+)$1	321	11	16	15.0000
UUUUU	chr1:85732539-85732816(-)$1	277	27	32	15.0000
UUUUU	chr13:98017145-98017492(+)$1	347	215	220	15.0000
UUUUU	chr3:48014435-48014727(-)$1	292	10	15	15.0000
UUUUU	chr16:28978061-28978355(+)$1	294	78	83	15.0000
UUUUU	chr8:30643164-30643442(-)$1	278	61	66	15.0000
UUUUU	chr14:69846889-69847139(-)$1	250	65	70	15.0000
UUUUU	chr8:42874497-42874785(+)$1	288	42	47	15.0000
UUUUU	chr9:115449109-115449408(-)$1	299	113	118	15.0000
UUUUU	chr4:15069868-15070166(+)$1	298	48	53	15.0000
UUUUU	chr1:16266718-16267022(+)$1	304	164	169	15.0000
UUUUU	chr10:860347-860666(-)$1	319	68	73	15.0000
UUUUU	chr11:96075322-96075636(-)$1	314	16	21	15.0000
UUUuu	chr17:64804348-64804593(+)$1	245	71	76	15.0000
UUUUU	chr1:248040318-248040640(+)$1	322	120	125	15.0000
UUUUU	chr8:64122488-64122745(+)$1	257	165	170	15.0000
UUUUU	chrX:70794175-70794501(+)$1	326	100	105	15.0000
UUUUU	chr1:248040247-248040518(+)$1	271	54	59	15.0000

#otherMatches

#Struct PSSM
=====	chr5:87498051-87498349(-)$1	298	7	12	15.0000
^^^^^	chr10:88810184-88810444(-)$1	260	92	97	15.0000
fffff	chr12:111886610-111886915(+)$1	305	156	161	15.0000
ddmmm	chr22:19956306-19956567(+)$1	261	127	132	15.0000
eewww	chr4:77956855-77957221(+)$1	366	166	171	15.0000
^^^^^	chr3:183889211-183889470(+)$1	259	106	111	15.0000
ooooo	chr9:86584797-86585053(-)$1	256	48	53	15.0000
^^^^^	chr1:54512960-54513227(-)$1	267	46	51	15.0000
:FFFF	chr10:60158420-60158732(+)$1	312	5	10	15.0000
:::ee	chr12:30872369-30872641(-)$1	272	124	129	15.0000
:::::	chr5:148884498-148884857(-)$1	359	108	113	15.0000
:::::	chr1:193222622-193222923(+)$1	301	7	12	15.0000
ffffg	chr9:123942860-123943139(-)$1	279	71	76	15.0000
@@@@@	chr2:209169984-209170301(+)$1	317	300	305	15.0000
ffbb[	chr1:150117232-150117502(+)$1	270	193	198	15.0000
FFFFF	chr9:86584384-86584720(-)$1	336	192	197	15.0000
NNNCC	chr1:117645209-117645484(+)$1	275	38	43	15.0000
cc!!f	chr1:78482651-78482957(+)$1	306	65	70	15.0000
ddddl	chr3:176741351-176741741(-)$1	390	248	253	15.0000
:::::	chr12:112443466-112443782(-)$1	316	92	97	15.0000
dd>>>	chr2:149449363-149449618(+)$1	255	130	135	15.0000
=====	chr12:67706371-67706745(+)$1	374	349	354	15.0000
=====	chr21:30718137-30718487(+)$1	350	105	110	15.0000
nnnnn	chr12:54678090-54678346(+)$1	256	24	29	15.0000
::eee	chr7:86792276-86792592(+)$1	316	11	16	15.0000
:::::	chr2:149449603-149449895(+)$1	292	39	44	15.0000
mhhhh	chr3:56656043-56656323(-)$1	280	147	152	15.0000
==:::	chr14:97001018-97001322(+)$1	304	99	104	15.0000
crrrr	chr1:198291199-198291472(+)$1	273	156	161	15.0000
ffff!	chr2:152659020-152659287(-)$1	267	201	206	15.0000
^^^^^	chr4:73941036-73941324(-)$1	288	18	23	15.0000
emmmm	chr11:17110920-17111192(-)$1	272	14	19	15.0000
:::::	chr22:26931829-26932071(-)$1	242	103	108	15.0000
^^^^^	chr16:69737618-69737881(+)$1	263	38	43	15.0000
IIIII	chr14:31086835-31087174(+)$1	339	99	104	15.0000
CKKBB	chr3:183704475-183704764(-)$1	289	19	24	15.0000
:::::	chr7:140424882-140425179(-)$1	297	83	88	15.0000
:::::	chr7:77569619-77569927(+)$1	308	92	97	15.0000
@@@@@	chr14:69846787-69847020(-)$1	233	192	197	15.0000
|||||	chr13:98046116-98046408(+)$1	292	275	280	15.0000
:::::	chr7:158433534-158433829(-)$1	295	1	6	15.0000
::ggg	chr6:157739430-157739739(-)$1	309	107	112	15.0000
IIIII	chr12:70731238-70731542(+)$1	304	91	96	15.0000
EEMMM	chr10:93622933-93623245(+)$1	312	18	23	15.0000
fwwww	chr18:2582383-2582715(+)$1	332	21	26	15.0000
mmmmd	chr2:85547883-85548195(-)$1	312	26	31	15.0000
hhhhh	chr7:64293548-64293841(+)$1	293	195	200	15.0000
:::::	chr7:26230805-26231129(-)$1	324	234	239	15.0000
GGGFF	chr15:42834648-42834950(-)$1	302	98	103	15.0000
D:fff	chr11:3011918-3012192(-)$1	274	200	205	15.0000
:::::	chr14:21461889-21462202(+)$1	313	51	56	15.0000
JJJ~~	chr8:62588111-62588421(-)$1	310	217	222	15.0000
ggggg	chr1:47143916-47144204(-)$1	288	227	232	15.0000
ff::f	chr21:40717930-40718140(-)$1	210	173	178	15.0000
qqqqq	chr2:149449306-149449563(+)$1	257	15	20	15.0000
=====	chr6:108365477-108365790(-)$1	313	150	155	15.0000
:::::	chr21:36259457-36259693(-)$1	236	17	22	15.0000
CCKKD	chr8:67543396-67543706(-)$1	310	12	17	15.0000
EEEEE	chr6:163994664-163994985(+)$1	321	11	16	15.0000
5555e	chr1:85732539-85732816(-)$1	277	27	32	15.0000
}EEEE	chr13:98017145-98017492(+)$1	347	215	220	15.0000
eemmm	chr3:48014435-48014727(-)$1	292	10	15	15.0000
heeee	chr16:28978061-28978355(+)$1	294	78	83	15.0000
fffff	chr8:30643164-30643442(-)$1	278	61	66	15.0000
22ddd	chr14:69846889-69847139(-)$1	250	65	70	15.0000
:::ee	chr8:42874497-42874785(+)$1	288	42	47	15.0000
:::::	chr9:115449109-115449408(-)$1	299	113	118	15.0000
:::::	chr4:15069868-15070166(+)$1	298	48	53	15.0000
=ssss	chr1:16266718-16267022(+)$1	304	164	169	15.0000
^^^^^	chr10:860347-860666(-)$1	319	68	73	15.0000
ddqqq	chr11:96075322-96075636(-)$1	314	16	21	15.0000
dddd'	chr17:64804348-64804593(+)$1	245	71	76	15.0000
5hhhh	chr1:248040318-248040640(+)$1	322	120	125	15.0000
qqqqq	chr8:64122488-64122745(+)$1	257	165	170	15.0000
[dddd	chrX:70794175-70794501(+)$1	326	100	105	15.0000
::FFF	chr1:248040247-248040518(+)$1	271	54	59	15.0000

#DB
(((((	chr5:87498051-87498349(-)$1	1	7	12	15.0000
.....	chr10:88810184-88810444(-)$1	1	92	97	15.0000
(((((	chr12:111886610-111886915(+)$1	1	156	161	15.0000
((...	chr22:19956306-19956567(+)$1	1	127	132	15.0000
((...	chr4:77956855-77957221(+)$1	1	166	171	15.0000
.....	chr3:183889211-183889470(+)$1	1	106	111	15.0000
.....	chr9:86584797-86585053(-)$1	1	48	53	15.0000
.....	chr1:54512960-54513227(-)$1	1	46	51	15.0000
.((((	chr10:60158420-60158732(+)$1	1	5	10	15.0000
...((	chr12:30872369-30872641(-)$1	1	124	129	15.0000
.....	chr5:148884498-148884857(-)$1	1	108	113	15.0000
.....	chr1:193222622-193222923(+)$1	1	7	12	15.0000
(((((	chr9:123942860-123943139(-)$1	1	71	76	15.0000
.....	chr2:209169984-209170301(+)$1	1	300	305	15.0000
((((.	chr1:150117232-150117502(+)$1	1	193	198	15.0000
(((((	chr9:86584384-86584720(-)$1	1	192	197	15.0000
...((	chr1:117645209-117645484(+)$1	1	38	43	15.0000
((..(	chr1:78482651-78482957(+)$1	1	65	70	15.0000
((((.	chr3:176741351-176741741(-)$1	1	248	253	15.0000
.....	chr12:112443466-112443782(-)$1	1	92	97	15.0000
))...	chr2:149449363-149449618(+)$1	1	130	135	15.0000
)))))	chr12:67706371-67706745(+)$1	1	349	354	15.0000
)))))	chr21:30718137-30718487(+)$1	1	105	110	15.0000
.....	chr12:54678090-54678346(+)$1	1	24	29	15.0000
..(((	chr7:86792276-86792592(+)$1	1	11	16	15.0000
.....	chr2:149449603-149449895(+)$1	1	39	44	15.0000
.))))	chr3:56656043-56656323(-)$1	1	147	152	15.0000
))...	chr14:97001018-97001322(+)$1	1	99	104	15.0000
(....	chr1:198291199-198291472(+)$1	1	156	161	15.0000
((((.	chr2:152659020-152659287(-)$1	1	201	206	15.0000
.....	chr4:73941036-73941324(-)$1	1	18	23	15.0000
(....	chr11:17110920-17111192(-)$1	1	14	19	15.0000
.....	chr22:26931829-26932071(-)$1	1	103	108	15.0000
.....	chr16:69737618-69737881(+)$1	1	38	43	15.0000
(((((	chr14:31086835-31087174(+)$1	1	99	104	15.0000
(..((	chr3:183704475-183704764(-)$1	1	19	24	15.0000
.....	chr7:140424882-140425179(-)$1	1	83	88	15.0000
.....	chr7:77569619-77569927(+)$1	1	92	97	15.0000
.....	chr14:69846787-69847020(-)$1	1	192	197	15.0000
.....	chr13:98046116-98046408(+)$1	1	275	280	15.0000
.....	chr7:158433534-158433829(-)$1	1	1	6	15.0000
..(((	chr6:157739430-157739739(-)$1	1	107	112	15.0000
(((((	chr12:70731238-70731542(+)$1	1	91	96	15.0000
((...	chr10:93622933-93623245(+)$1	1	18	23	15.0000
(....	chr18:2582383-2582715(+)$1	1	21	26	15.0000
....)	chr2:85547883-85548195(-)$1	1	26	31	15.0000
)))))	chr7:64293548-64293841(+)$1	1	195	200	15.0000
.....	chr7:26230805-26231129(-)$1	1	234	239	15.0000
)))))	chr15:42834648-42834950(-)$1	1	98	103	15.0000
).(((	chr11:3011918-3012192(-)$1	1	200	205	15.0000
.....	chr14:21461889-21462202(+)$1	1	51	56	15.0000
)))..	chr8:62588111-62588421(-)$1	1	217	222	15.0000
(((((	chr1:47143916-47144204(-)$1	1	227	232	15.0000
))..(	chr21:40717930-40718140(-)$1	1	173	178	15.0000
.....	chr2:149449306-149449563(+)$1	1	15	20	15.0000
(((((	chr6:108365477-108365790(-)$1	1	150	155	15.0000
.....	chr21:36259457-36259693(-)$1	1	17	22	15.0000
((..(	chr8:67543396-67543706(-)$1	1	12	17	15.0000
(((((	chr6:163994664-163994985(+)$1	1	11	16	15.0000
....)	chr1:85732539-85732816(-)$1	1	27	32	15.0000
.))))	chr13:98017145-98017492(+)$1	1	215	220	15.0000
((...	chr3:48014435-48014727(-)$1	1	10	15	15.0000
)))))	chr16:28978061-28978355(+)$1	1	78	83	15.0000
(((((	chr8:30643164-30643442(-)$1	1	61	66	15.0000
..)))	chr14:69846889-69847139(-)$1	1	65	70	15.0000
...((	chr8:42874497-42874785(+)$1	1	42	47	15.0000
.....	chr9:115449109-115449408(-)$1	1	113	118	15.0000
.....	chr4:15069868-15070166(+)$1	1	48	53	15.0000
(....	chr1:16266718-16267022(+)$1	1	164	169	15.0000
.....	chr10:860347-860666(-)$1	1	68	73	15.0000
((...	chr11:96075322-96075636(-)$1	1	16	21	15.0000
((((.	chr17:64804348-64804593(+)$1	1	71	76	15.0000
.))))	chr1:248040318-248040640(+)$1	1	120	125	15.0000
.....	chr8:64122488-64122745(+)$1	1	165	170	15.0000
.((((	chrX:70794175-70794501(+)$1	1	100	105	15.0000
..(((	chr1:248040247-248040518(+)$1	1	54	59	15.0000

#PSSM
U : 0.88	u : 0.11	
U : 0.88	u : 0.11	
U : 0.88	u : 0.11	
U : 0.86	u : 0.13	
U : 0.86	u : 0.13	

#score	1140.0000000000002
#seq	76
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_CDS_m3_run2.nuc.txt

#NT
GGAGAAG	chr6:37138731-37139005(+)$1	274	42	49	16.8461
GGUGAAG	chr17:7399400-7399637(+)$1	237	201	208	12.4615
GGAGAUG	chr6:43589779-43590055(-)$1	276	171	178	12.8461
GAAGAAG	chr1:28898291-28898590(+)$1	299	93	100	12.9230
GGAGAGG	chr7:26237224-26237468(-)$1	244	5	12	12.6923
GGAGAAA	chr10:121341826-121342100(-)$1	274	110	117	13.0769
GGAGAUG	chr17:57232243-57232553(-)$1	310	277	284	12.8461
GAAGAAG	chr17:79479238-79479562(-)$1	324	185	192	12.9230
GGAGAAG	chr11:67938482-67938765(-)$1	283	204	211	16.8461
GGAGCAG	chr1:45267373-45267635(+)$1	262	216	223	12.8461
GGAAAAG	chr17:62497971-62498262(-)$1	291	86	93	12.6153
GGAGGAG	chrX:49105139-49105419(+)$1	280	34	41	13.3076
GGAGGAG	chr1:249151532-249151859(-)$1	327	116	123	13.3076
GCAGAAG	chr3:49154653-49154944(-)$1	291	146	153	12.7692
GGAGAAG	chr16:67915306-67915536(+)$1	230	180	187	16.8461
GGUGAAG	chr12:56827126-56827395(-)$1	269	118	125	12.4615
GGAGAAC	chr8:145006070-145006362(-)$1	292	236	243	12.7692
GGAGGAG	chr12:132628047-132628344(-)$1	297	35	42	13.3076
GGAGAGG	chr17:80417859-80418092(+)$1	233	83	90	12.6923
GGAGGAG	chr16:66785154-66785439(-)$1	285	28	35	13.3076
ggugaag	chr1:43302703-43302976(+)$1	273	18	25	12.4615
GGAGAAG	chr19:10220986-10221275(+)$1	289	217	224	16.8461
GGAGAAG	chr8:145667215-145667541(-)$1	326	297	304	16.8461
GUAGAAG	chr10:76980605-76980930(+)$1	325	282	289	12.9230
GGAAAAG	chr11:10822093-10822364(-)$1	271	23	30	12.6153
GGAGAUG	chr11:59577132-59577429(-)$1	297	163	170	12.8461
GGAAAAG	chr1:1588546-1588909(-)$1	363	27	34	12.6153
GGAGAAC	chr22:21107180-21107405(-)$1	225	101	108	12.7692
UGAGAAG	chr11:62444988-62445275(-)$1	287	32	39	12.6153
GGAGAAA	chr4:104115375-104115671(-)$1	296	87	94	13.0769
UGAGAAG	chr8:68015254-68015553(+)$1	299	234	241	12.6153
GGAGAAA	chr5:94851957-94852207(-)$1	250	232	239	13.0769
GGAGAAG	chr14:74761664-74761991(-)$1	327	189	196	16.8461
GAAGAAG	chr6:37138805-37139072(+)$1	267	133	140	12.9230
UGAGAAG	chr9:128003031-128003298(-)$1	267	67	74	12.6153
GGAAAAG	chr14:103802225-103802490(+)$1	265	242	249	12.6153
GGUGAAG	chr1:145439722-145439963(+)$1	241	103	110	12.4615
GGAGAAG	chr12:56552157-56552465(+)$1	308	100	107	16.8461
GGAGAUG	chr7:102963010-102963284(-)$1	274	54	61	12.8461
GGAGGAG	chr1:153927326-153927611(-)$1	285	90	97	13.3076
GGAGAAG	chr6:116968461-116968750(-)$1	289	68	75	16.8461
GGAGAGG	chr22:47158568-47158862(+)$1	294	269	276	12.6923
GUAGAAG	chr11:62655689-62655953(+)$1	264	52	59	12.9230
GGAGAAG	chr6:37138572-37138875(+)$1	303	201	208	16.8461
GUAGAAG	chr2:38795315-38795601(-)$1	286	215	222	12.9230
AGAGAAG	chr17:76120898-76121142(-)$1	244	76	83	12.4615
GUAGAAG	chr1:100177531-100177814(-)$1	283	91	98	12.9230
GGAGAAA	chr4:144459746-144460071(+)$1	325	62	69	13.0769
GGAGGAG	chr17:8053323-8053611(-)$1	288	92	99	13.3076
GAAGAAG	chr3:135975330-135975685(+)$1	355	17	24	12.9230
GGAGUAG	chr19:41782089-41782330(+)$1	241	10	17	12.7692
GGAGAAA	chr10:74776453-74776776(-)$1	323	190	197	13.0769
GGAGAUG	chr1:249149497-249149835(-)$1	338	90	97	12.8461
GCAGAAG	chr17:42155914-42156181(-)$1	267	167	174	12.7692
AGAGAAG	chr7:73111690-73111970(+)$1	280	122	129	12.4615
GGAGAAU	chr1:55631370-55631668(-)$1	298	48	55	12.7692
GGAAAAG	chr9:97209098-97209355(+)$1	257	21	28	12.6153
GGAGAAA	chr6:28876448-28876721(-)$1	273	123	130	13.0769
GGAGCAG	chr11:46397446-46397733(+)$1	287	35	42	12.8461
GGAGGAG	chr14:20916034-20916341(-)$1	307	266	273	13.3076
GGAGAAU	chr22:19398109-19398409(-)$1	300	2	9	12.7692
UGAGAAG	chr6:43596471-43596725(-)$1	254	21	28	12.6153
GGAGAAG	chr6:33179170-33179453(+)$1	283	127	134	16.8461
GGAGGAG	chr6:31726141-31726423(+)$1	282	44	51	13.3076

#otherMatches

#Struct PSSM
apppppp	chr16:28844595-28844860(+)$1	265	48	55	16.8461
ddd::ff	chr6:37138731-37139005(+)$1	274	42	49	16.8461
DDDDYYC	chr17:7399400-7399637(+)$1	237	201	208	12.4615
caeeeee	chr6:43589779-43590055(-)$1	276	171	178	12.8461
]dddd22	chr1:28898291-28898590(+)$1	299	93	100	12.9230
E{IIIII	chr7:26237224-26237468(-)$1	244	5	12	12.6923
JJJJJ::	chr10:121341826-121342100(-)$1	274	110	117	13.0769
ggGGGGG	chr17:57232243-57232553(-)$1	310	277	284	12.8461
C?????H	chr17:79479238-79479562(-)$1	324	185	192	12.9230
hhhhddd	chr11:67938482-67938765(-)$1	283	204	211	16.8461
dd]bb::	chr1:45267373-45267635(+)$1	262	216	223	12.8461
cccnnnn	chr17:62497971-62498262(-)$1	291	86	93	12.6153
qqqa22e	chrX:49105139-49105419(+)$1	280	34	41	13.3076
uuueeee	chr1:249151532-249151859(-)$1	327	116	123	13.3076
g[bbppp	chr3:49154653-49154944(-)$1	291	146	153	12.7692
hhhhccc	chr16:67915306-67915536(+)$1	230	180	187	16.8461
ddd####	chr12:56827126-56827395(-)$1	269	118	125	12.4615
==bbqqq	chr8:145006070-145006362(-)$1	292	236	243	12.7692
oooooob	chr12:132628047-132628344(-)$1	297	35	42	13.3076
=="""dd	chr17:80417859-80418092(+)$1	233	83	90	12.6923
bb[ccc[	chr16:66785154-66785439(-)$1	285	28	35	13.3076
EE{GGGG	chr1:43302703-43302976(+)$1	273	18	25	12.4615
ZCCCYYB	chr19:10220986-10221275(+)$1	289	217	224	16.8461
cgggggg	chr8:145667215-145667541(-)$1	326	297	304	16.8461
:::::ee	chr10:76980605-76980930(+)$1	325	282	289	12.9230
ddnnnnn	chr11:10822093-10822364(-)$1	271	23	30	12.6153
hhh"""e	chr11:59577132-59577429(-)$1	297	163	170	12.8461
333dddd	chr1:1588546-1588909(-)$1	363	27	34	12.6153
eeeee::	chr22:21107180-21107405(-)$1	225	101	108	12.7692
bmmmmbb	chr11:62444988-62445275(-)$1	287	32	39	12.6153
^^^^^^^	chr4:104115375-104115671(-)$1	296	87	94	13.0769
^^^^^^^	chr8:68015254-68015553(+)$1	299	234	241	12.6153
eeeee::	chr5:94851957-94852207(-)$1	250	232	239	13.0769
dd####c	chr14:74761664-74761991(-)$1	327	189	196	16.8461
PPPPPPA	chr6:37138805-37139072(+)$1	267	133	140	12.9230
ggg####	chr9:128003031-128003298(-)$1	267	67	74	12.6153
cccmmmm	chr14:103802225-103802490(+)$1	265	242	249	12.6153
GGGGG:d	chr1:145439722-145439963(+)$1	241	103	110	12.4615
MMMCCC{	chr12:56552157-56552465(+)$1	308	100	107	16.8461
]bb::ff	chr7:102963010-102963284(-)$1	274	54	61	12.8461
======!	chr1:153927326-153927611(-)$1	285	90	97	13.3076
]ccc::b	chr6:116968461-116968750(-)$1	289	68	75	16.8461
gg]dddd	chr22:47158568-47158862(+)$1	294	269	276	12.6923
hhhhhhh	chr11:62655689-62655953(+)$1	264	52	59	12.9230
ddd::::	chr6:37138572-37138875(+)$1	303	201	208	16.8461
f!!eeee	chr2:38795315-38795601(-)$1	286	215	222	12.9230
{A{A{CC	chr17:76120898-76121142(-)$1	244	76	83	12.4615
999hhhh	chr1:100177531-100177814(-)$1	283	91	98	12.9230
FFFFLLL	chr4:144459746-144460071(+)$1	325	62	69	13.0769
f]ccc::	chr17:8053323-8053611(-)$1	288	92	99	13.3076
======c	chr3:135975330-135975685(+)$1	355	17	24	12.9230
a!!a[ee	chr19:41782089-41782330(+)$1	241	10	17	12.7692
Gccc'''	chr10:74776453-74776776(-)$1	323	190	197	13.0769
55555dd	chr1:249149497-249149835(-)$1	338	90	97	12.8461
bb####f	chr17:42155914-42156181(-)$1	267	167	174	12.7692
b!!bb[e	chr7:73111690-73111970(+)$1	280	122	129	12.4615
HHKKGGG	chr1:55631370-55631668(-)$1	298	48	55	12.7692
ee!!eee	chr9:97209098-97209355(+)$1	257	21	28	12.6153
YYBB}GG	chr6:28876448-28876721(-)$1	273	123	130	13.0769
DDDDLLL	chr11:46397446-46397733(+)$1	287	35	42	12.8461
pdddd:E	chr14:20916034-20916341(-)$1	307	266	273	13.3076
FFFFFF:	chr22:19398109-19398409(-)$1	300	2	9	12.7692
IIIII{B	chr6:43596471-43596725(-)$1	254	21	28	12.6153
dd####e	chr6:33179170-33179453(+)$1	283	127	134	16.8461
bb!!eee	chr6:31726141-31726423(+)$1	282	44	51	13.3076

#DB
(......	chr16:28844595-28844860(+)$1	1	48	55	16.8461
)))..((	chr6:37138731-37139005(+)$1	1	42	49	16.8461
))))..)	chr17:7399400-7399637(+)$1	1	201	208	12.4615
(((((((	chr6:43589779-43590055(-)$1	1	171	178	12.8461
.))))..	chr1:28898291-28898590(+)$1	1	93	100	12.9230
(.(((((	chr7:26237224-26237468(-)$1	1	5	12	12.6923
)))))..	chr10:121341826-121342100(-)$1	1	110	117	13.0769
)))))))	chr17:57232243-57232553(-)$1	1	277	284	12.8461
).....)	chr17:79479238-79479562(-)$1	1	185	192	12.9230
))))(((	chr11:67938482-67938765(-)$1	1	204	211	16.8461
)).))..	chr1:45267373-45267635(+)$1	1	216	223	12.8461
(((....	chr17:62497971-62498262(-)$1	1	86	93	12.6153
...)..)	chrX:49105139-49105419(+)$1	1	34	41	13.3076
...))))	chr1:249151532-249151859(-)$1	1	116	123	13.3076
(.((...	chr3:49154653-49154944(-)$1	1	146	153	12.7692
)))))))	chr16:67915306-67915536(+)$1	1	180	187	16.8461
(((....	chr12:56827126-56827395(-)$1	1	118	125	12.4615
((((...	chr8:145006070-145006362(-)$1	1	236	243	12.7692
......)	chr12:132628047-132628344(-)$1	1	35	42	13.3076
((...((	chr17:80417859-80418092(+)$1	1	83	90	12.6923
((.(((.	chr16:66785154-66785439(-)$1	1	28	35	13.3076
((.((((	chr1:43302703-43302976(+)$1	1	18	25	12.4615
.)))..)	chr19:10220986-10221275(+)$1	1	217	224	16.8461
(((((((	chr8:145667215-145667541(-)$1	1	297	304	16.8461
.....((	chr10:76980605-76980930(+)$1	1	282	289	12.9230
((.....	chr11:10822093-10822364(-)$1	1	23	30	12.6153
(((...(	chr11:59577132-59577429(-)$1	1	163	170	12.8461
...))))	chr1:1588546-1588909(-)$1	1	27	34	12.6153
)))))..	chr22:21107180-21107405(-)$1	1	101	108	12.7692
(....))	chr11:62444988-62445275(-)$1	1	32	39	12.6153
.......	chr4:104115375-104115671(-)$1	1	87	94	13.0769
.......	chr8:68015254-68015553(+)$1	1	234	241	12.6153
)))))..	chr5:94851957-94852207(-)$1	1	232	239	13.0769
((....(	chr14:74761664-74761991(-)$1	1	189	196	16.8461
......(	chr6:37138805-37139072(+)$1	1	133	140	12.9230
(((....	chr9:128003031-128003298(-)$1	1	67	74	12.6153
(((....	chr14:103802225-103802490(+)$1	1	242	249	12.6153
))))).(	chr1:145439722-145439963(+)$1	1	103	110	12.4615
...(((.	chr12:56552157-56552465(+)$1	1	100	107	16.8461
.))..((	chr7:102963010-102963284(-)$1	1	54	61	12.8461
((((((.	chr1:153927326-153927611(-)$1	1	90	97	13.3076
.)))..(	chr6:116968461-116968750(-)$1	1	68	75	16.8461
)).))))	chr22:47158568-47158862(+)$1	1	269	276	12.6923
(((((((	chr11:62655689-62655953(+)$1	1	52	59	12.9230
)))....	chr6:37138572-37138875(+)$1	1	201	208	16.8461
(..((((	chr2:38795315-38795601(-)$1	1	215	222	12.9230
.(.(.((	chr17:76120898-76121142(-)$1	1	76	83	12.4615
...))))	chr1:100177531-100177814(-)$1	1	91	98	12.9230
((((...	chr4:144459746-144460071(+)$1	1	62	69	13.0769
).)))..	chr17:8053323-8053611(-)$1	1	92	99	13.3076
(((((((	chr3:135975330-135975685(+)$1	1	17	24	12.9230
(..(.((	chr19:41782089-41782330(+)$1	1	10	17	12.7692
)(((...	chr10:74776453-74776776(-)$1	1	190	197	13.0769
.....))	chr1:249149497-249149835(-)$1	1	90	97	12.8461
((....(	chr17:42155914-42156181(-)$1	1	167	174	12.7692
(..((.(	chr7:73111690-73111970(+)$1	1	122	129	12.4615
((..(((	chr1:55631370-55631668(-)$1	1	48	55	12.7692
((..(((	chr9:97209098-97209355(+)$1	1	21	28	12.6153
..)).))	chr6:28876448-28876721(-)$1	1	123	130	13.0769
((((...	chr11:46397446-46397733(+)$1	1	35	42	12.8461
.)))).)	chr14:20916034-20916341(-)$1	1	266	273	13.3076
((((((.	chr22:19398109-19398409(-)$1	1	2	9	12.7692
(((((.(	chr6:43596471-43596725(-)$1	1	21	28	12.6153
((....(	chr6:33179170-33179453(+)$1	1	127	134	16.8461
((..(((	chr6:31726141-31726423(+)$1	1	44	51	13.3076

#PSSM
G : 0.89	U : 0.06	A : 0.03	g : 0.01	
G : 0.83	A : 0.06	U : 0.06	C : 0.03	g : 0.01	
A : 0.93	U : 0.04	u : 0.01	
G : 0.90	A : 0.07	g : 0.01	
A : 0.81	G : 0.12	C : 0.03	a : 0.01	U : 0.01	
A : 0.86	U : 0.07	G : 0.04	a : 0.01	
G : 0.83	A : 0.09	C : 0.03	U : 0.03	g : 0.01	

#score	879.3076923076907
#seq	65
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_UTR_m3_run2.nuc.txt

#NT
AUUGAUUU	chr15:65870338-65870764(+)$1	426	171	179	15.1320
Auuuuuuu	chr1:156495362-156495623(-)$1	261	76	84	16.6415
AUUUAUUU	chr2:53897145-53897447(-)$1	302	80	88	19.7547
auuuauau	chr19:2273160-2273399(+)$1	239	152	160	15.1320
AUUUAUUA	chr2:61413834-61414077(+)$1	243	93	101	15.5094
AUUUGUUU	chr3:132276939-132277188(-)$1	249	214	222	16.2641
AUUUAUUU	chr16:16236676-16236984(+)$1	308	112	120	19.7547
auuuuuuu	chr17:1323898-1324236(-)$1	338	156	164	16.6415
AUUUAUUU	chr19:15225726-15225960(-)$1	234	185	193	19.7547
AGUUAUUU	chr2:201717822-201718055(-)$1	233	93	101	15.1320
AUUUAUUA	chr1:186282879-186283175(-)$1	296	217	225	15.5094
AUUUAUUA	chr2:153506086-153506368(+)$1	282	92	100	15.5094
CUUUAUUU	chr12:131625771-131626089(+)$1	318	61	69	16.1698
AUAUAUUU	chr16:11772860-11773149(-)$1	289	147	155	15.8867
CUUUCUUU	chr16:28848288-28848538(+)$1	250	129	137	13.0566
AUUUAAUU	chr14:93170190-93170507(-)$1	317	297	305	15.0377
AUGUAUUU	chr16:67210118-67210372(-)$1	254	212	220	15.6037
AUUUACUU	chr9:745896-746186(+)$1	290	122	130	15.0377
AAUUAUUU	chr4:762416-762680(+)$1	264	77	85	15.1320
CUUUCUUU	chr16:28848242-28848480(+)$1	238	175	183	13.0566
AUUUAUUU	chr3:49052862-49053110(+)$1	248	77	85	19.7547
auuuuuuu	chr1:100548698-100548962(+)$1	264	218	226	16.6415
AUUUUUUU	chr6:145173831-145174141(+)$1	310	97	105	16.6415
AUUUCUUU	chrX:132669789-132670005(-)$1	216	197	205	16.6415
auuuauuu	chr2:182795182-182795479(+)$1	297	267	275	19.7547
AUUUAUUA	chr1:213072234-213072506(+)$1	272	246	254	15.5094
uuuuauuu	chr14:23527689-23527924(-)$1	235	77	85	16.0754
auuuauuu	chr6:43753983-43754201(+)$1	218	47	55	19.7547
AUUUAUUU	chr9:134373547-134373786(+)$1	239	76	84	19.7547
AUUCAUUU	chr10:300353-300620(+)$1	267	174	182	15.2264
CUUUCUUU	chr17:39978802-39979080(+)$1	278	220	228	13.0566
AUGUAUUU	chr15:34818693-34818936(-)$1	243	98	106	15.6037
AUAUAUUU	chr10:98718486-98718761(+)$1	275	227	235	15.8867
AUAUAUUU	chr19:7116041-7116290(-)$1	249	222	230	15.8867
AUAUAUUU	chr17:63524663-63524940(-)$1	277	82	90	15.8867
auucauuu	chr5:52782771-52783017(+)$1	246	71	79	15.2264
GUUUAUUU	chr17:79910315-79910568(-)$1	253	198	206	15.7924
AUUUAUUU	chr1:70717430-70717728(+)$1	298	283	291	19.7547
UUUUAUUU	chr2:26360025-26360304(+)$1	279	87	95	16.0754
ACUUAUUU	chr6:64291010-64291280(+)$1	270	13	21	15.1320
AUUUUUUU	chr3:156865631-156865911(-)$1	280	49	57	16.6415
AUUUAUAU	chr1:207968518-207968823(+)$1	305	86	94	15.1320
AUUUGUUU	chr2:62451642-62451884(+)$1	242	49	57	16.2641
UUUUAUUU	chr16:11844365-11844679(-)$1	314	112	120	16.0754
AUUUAUUU	chr14:31569248-31569501(-)$1	253	97	105	19.7547
CUUUAUUU	chr5:74016886-74017188(+)$1	302	158	166	16.1698
AUUUAUUU	chr18:8639184-8639467(+)$1	283	210	218	19.7547
AUUUAUUU	chr18:9954362-9954643(+)$1	281	229	237	19.7547
AUAUAUUU	chrX:23804118-23804382(+)$1	264	97	105	15.8867
AUUUAUUU	chr10:99520186-99520437(+)$1	251	25	33	19.7547
AUUUCUUU	chr2:113421171-113421420(+)$1	249	94	102	16.6415
AUUUUUUU	chr12:56510336-56510543(+)$1	207	97	105	16.6415

#otherMatches

#Struct PSSM
::::::::	chr12:71979846-71980111(+)$1	265	122	130	12.9622
hhhhhh::	chr15:65870338-65870764(+)$1	426	171	179	15.1320
::::::::	chr1:156495362-156495623(-)$1	261	76	84	16.6415
i:::::::	chr2:53897145-53897447(-)$1	302	80	88	19.7547
55ccc]ff	chr19:2273160-2273399(+)$1	239	152	160	15.1320
::::::::	chr2:61413834-61414077(+)$1	243	93	101	15.5094
%%%%%fff	chr3:132276939-132277188(-)$1	249	214	222	16.2641
::::::::	chr16:16236676-16236984(+)$1	308	112	120	19.7547
INNNNNFF	chr17:1323898-1324236(-)$1	338	156	164	16.6415
[ggggggg	chr19:15225726-15225960(-)$1	234	185	193	19.7547
fffff22c	chr2:201717822-201718055(-)$1	233	93	101	15.1320
33gggggg	chr1:186282879-186283175(-)$1	296	217	225	15.5094
ff####dd	chr2:153506086-153506368(+)$1	282	92	100	15.5094
bbqqqqqq	chr12:131625771-131626089(+)$1	318	61	69	16.1698
i####eee	chr16:11772860-11773149(-)$1	289	147	155	15.8867
bb[fffff	chr16:28848288-28848538(+)$1	250	129	137	13.0566
@@@@@@@@	chr14:93170190-93170507(-)$1	317	297	305	15.0377
ggggg!!c	chr16:67210118-67210372(-)$1	254	212	220	15.6037
::::::::	chr9:745896-746186(+)$1	290	122	130	15.0377
^^^^^^^^	chr4:762416-762680(+)$1	264	77	85	15.1320
bb[fffff	chr16:28848242-28848480(+)$1	238	175	183	13.0566
$$$$bb[b	chr3:49052862-49053110(+)$1	248	77	85	19.7547
iiiiiiii	chr1:100548698-100548962(+)$1	264	218	226	16.6415
::::::::	chr6:145173831-145174141(+)$1	310	97	105	16.6415
DD}CCC::	chrX:132669789-132670005(-)$1	216	197	205	16.6415
cppppppp	chr2:182795182-182795479(+)$1	297	267	275	19.7547
ffffnnnn	chr1:213072234-213072506(+)$1	272	246	254	15.5094
========	chr14:23527689-23527924(-)$1	235	77	85	16.0754
DDDD{CCC	chr6:43753983-43754201(+)$1	218	47	55	19.7547
fff[eeee	chr9:134373547-134373786(+)$1	239	76	84	19.7547
ccc[a[gg	chr10:300353-300620(+)$1	267	174	182	15.2264
@@@@GGGG	chr17:39978802-39979080(+)$1	278	220	228	13.0566
dddd[ddd	chr15:34818693-34818936(-)$1	243	98	106	15.6037
:::ccc""	chr10:98718486-98718761(+)$1	275	227	235	15.8867
}DDDD:::	chr19:7116041-7116290(-)$1	249	222	230	15.8867
meeeee33	chr17:63524663-63524940(-)$1	277	82	90	15.8867
ggggggg=	chr5:52782771-52783017(+)$1	246	71	79	15.2264
EEE?????	chr17:79910315-79910568(-)$1	253	198	206	15.7924
GG::::::	chr1:70717430-70717728(+)$1	298	283	291	19.7547
GGG:::::	chr2:26360025-26360304(+)$1	279	87	95	16.0754
[ccc[ggg	chr6:64291010-64291280(+)$1	270	13	21	15.1320
F:::::::	chr3:156865631-156865911(-)$1	280	49	57	16.6415
gmmmmggg	chr1:207968518-207968823(+)$1	305	86	94	15.1320
f::FFFFF	chr2:62451642-62451884(+)$1	242	49	57	16.2641
dd333ddd	chr16:11844365-11844679(-)$1	314	112	120	16.0754
::::::::	chr14:31569248-31569501(-)$1	253	97	105	19.7547
[ggggggg	chr5:74016886-74017188(+)$1	302	158	166	16.1698
2iiiiiii	chr18:8639184-8639467(+)$1	283	210	218	19.7547
nnneeeee	chr18:9954362-9954643(+)$1	281	229	237	19.7547
::::::::	chrX:23804118-23804382(+)$1	264	97	105	15.8867
eeee!!ff	chr10:99520186-99520437(+)$1	251	25	33	19.7547
========	chr2:113421171-113421420(+)$1	249	94	102	16.6415
::::::::	chr12:56510336-56510543(+)$1	207	97	105	16.6415

#DB
........	chr12:71979846-71980111(+)$1	1	122	130	12.9622
))))))..	chr15:65870338-65870764(+)$1	1	171	179	15.1320
........	chr1:156495362-156495623(-)$1	1	76	84	16.6415
).......	chr2:53897145-53897447(-)$1	1	80	88	19.7547
..))).))	chr19:2273160-2273399(+)$1	1	152	160	15.1320
........	chr2:61413834-61414077(+)$1	1	93	101	15.5094
.....(((	chr3:132276939-132277188(-)$1	1	214	222	16.2641
........	chr16:16236676-16236984(+)$1	1	112	120	19.7547
(.....((	chr17:1323898-1324236(-)$1	1	156	164	16.6415
.(((((((	chr19:15225726-15225960(-)$1	1	185	193	19.7547
)))))..)	chr2:201717822-201718055(-)$1	1	93	101	15.1320
..))))))	chr1:186282879-186283175(-)$1	1	217	225	15.5094
((....((	chr2:153506086-153506368(+)$1	1	92	100	15.5094
((......	chr12:131625771-131626089(+)$1	1	61	69	16.1698
(....(((	chr16:11772860-11773149(-)$1	1	147	155	15.8867
((.(((((	chr16:28848288-28848538(+)$1	1	129	137	13.0566
........	chr14:93170190-93170507(-)$1	1	297	305	15.0377
(((((..(	chr16:67210118-67210372(-)$1	1	212	220	15.6037
........	chr9:745896-746186(+)$1	1	122	130	15.0377
........	chr4:762416-762680(+)$1	1	77	85	15.1320
((.(((((	chr16:28848242-28848480(+)$1	1	175	183	13.0566
....((.(	chr3:49052862-49053110(+)$1	1	77	85	19.7547
((((((((	chr1:100548698-100548962(+)$1	1	218	226	16.6415
........	chr6:145173831-145174141(+)$1	1	97	105	16.6415
)).)))..	chrX:132669789-132670005(-)$1	1	197	205	16.6415
(.......	chr2:182795182-182795479(+)$1	1	267	275	19.7547
((((....	chr1:213072234-213072506(+)$1	1	246	254	15.5094
((((((((	chr14:23527689-23527924(-)$1	1	77	85	16.0754
((((.(((	chr6:43753983-43754201(+)$1	1	47	55	19.7547
(((.((((	chr9:134373547-134373786(+)$1	1	76	84	19.7547
(((.(.((	chr10:300353-300620(+)$1	1	174	182	15.2264
....))))	chr17:39978802-39979080(+)$1	1	220	228	13.0566
((((.(((	chr15:34818693-34818936(-)$1	1	98	106	15.6037
...(((..	chr10:98718486-98718761(+)$1	1	227	235	15.8867
.))))...	chr19:7116041-7116290(-)$1	1	222	230	15.8867
.)))))..	chr17:63524663-63524940(-)$1	1	82	90	15.8867
((((((((	chr5:52782771-52783017(+)$1	1	71	79	15.2264
))).....	chr17:79910315-79910568(-)$1	1	198	206	15.7924
))......	chr1:70717430-70717728(+)$1	1	283	291	19.7547
(((.....	chr2:26360025-26360304(+)$1	1	87	95	16.0754
.(((.(((	chr6:64291010-64291280(+)$1	1	13	21	15.1320
(.......	chr3:156865631-156865911(-)$1	1	49	57	16.6415
(....)))	chr1:207968518-207968823(+)$1	1	86	94	15.1320
)..(((((	chr2:62451642-62451884(+)$1	1	49	57	16.2641
))...)))	chr16:11844365-11844679(-)$1	1	112	120	16.0754
........	chr14:31569248-31569501(-)$1	1	97	105	19.7547
.(((((((	chr5:74016886-74017188(+)$1	1	158	166	16.1698
.)))))))	chr18:8639184-8639467(+)$1	1	210	218	19.7547
...)))))	chr18:9954362-9954643(+)$1	1	229	237	19.7547
........	chrX:23804118-23804382(+)$1	1	97	105	15.8867
((((..((	chr10:99520186-99520437(+)$1	1	25	33	19.7547
))))))))	chr2:113421171-113421420(+)$1	1	94	102	16.6415
........	chr12:56510336-56510543(+)$1	1	97	105	16.6415

#PSSM
A : 0.69	a : 0.11	C : 0.09	U : 0.05	u : 0.01	G : 0.01	
U : 0.79	u : 0.15	G : 0.01	A : 0.01	C : 0.01	
U : 0.71	u : 0.15	A : 0.09	G : 0.03	
U : 0.81	u : 0.13	G : 0.01	C : 0.01	c : 0.01	
A : 0.64	C : 0.11	a : 0.09	u : 0.05	U : 0.05	G : 0.03	
U : 0.81	u : 0.15	A : 0.01	C : 0.01	
U : 0.83	u : 0.13	a : 0.01	A : 0.01	
U : 0.77	u : 0.15	A : 0.07	

#score	875.2075471698112
#seq	53
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_UTR_m1_run1.nuc.txt

#NT
GAGG	chr20:60909976-60910189(-)$1	213	186	190	11.9999
GAGG	chr5:134131577-134131845(+)$1	268	260	264	11.9999
GAGG	chr8:145065265-145065486(+)$1	221	120	124	11.9999
GAGG	chr2:220251691-220251922(-)$1	231	64	68	11.9999
GAGG	chr21:45745973-45746197(+)$1	224	40	44	11.9999
GAGG	chr12:49495150-49495405(-)$1	255	124	128	11.9999
GAGG	chr2:97507694-97507991(-)$1	297	203	207	11.9999
GAGG	chr1:21929195-21929423(-)$1	228	46	50	11.9999
GAGG	chr20:61914070-61914276(+)$1	206	37	41	11.9999
GAGG	chr17:46051685-46051950(+)$1	265	206	210	11.9999
GAGG	chr17:7748204-7748437(+)$1	233	23	27	11.9999
GAGG	chr2:27261253-27261483(+)$1	230	34	38	11.9999
GAGG	chr20:60909478-60909685(-)$1	207	54	58	11.9999
GAGG	chr13:23949117-23949412(-)$1	295	152	156	11.9999
GAGG	chr11:67803827-67804098(+)$1	271	18	22	11.9999
GAGG	chr2:27261814-27262028(+)$1	214	30	34	11.9999
GAGG	chr18:706366-706648(-)$1	282	198	202	11.9999
GAGG	chr14:23444180-23444414(-)$1	234	12	16	11.9999
GAGG	chr2:74683237-74683500(+)$1	263	37	41	11.9999
GAGG	chr11:75147910-75148155(-)$1	245	18	22	11.9999
GAGG	chr16:70517763-70517972(-)$1	209	18	22	11.9999
GAGG	chr16:68265724-68266024(-)$1	300	29	33	11.9999
GAGG	chr1:1685953-1686211(-)$1	258	236	240	11.9999
GAGG	chr17:19559761-19559988(+)$1	227	71	75	11.9999
GAGG	chr3:47889857-47890086(+)$1	229	65	69	11.9999
GAGG	chr2:242598424-242598701(+)$1	277	168	172	11.9999
GAGG	chr19:42399325-42399577(+)$1	252	126	130	11.9999
GAGG	chr15:91498054-91498281(+)$1	227	14	18	11.9999
GAGG	chr17:76171023-76171279(-)$1	256	127	131	11.9999
GAGG	chr2:241463199-241463557(-)$1	358	38	42	11.9999
GAGG	chr17:79639450-79639711(+)$1	261	11	15	11.9999
GAGG	chr22:47290580-47290843(+)$1	263	159	163	11.9999
GAGG	chr16:711496-711703(+)$1	207	13	17	11.9999
gagg	chr9:123233989-123234216(-)$1	227	157	161	11.9999
GAGG	chr19:41250433-41250684(-)$1	251	188	192	11.9999
GAGG	chr9:117008057-117008290(+)$1	233	32	36	11.9999
GAGG	chr12:30867808-30868077(-)$1	269	122	126	11.9999
GAGG	chr6:31922743-31922973(-)$1	230	3	7	11.9999
GAGG	chr14:21555121-21555362(+)$1	241	140	144	11.9999
GAGG	chr12:112130556-112130804(+)$1	248	69	73	11.9999
GAGG	chr12:56566105-56566344(-)$1	239	23	27	11.9999
GAGG	chrX:48434143-48434393(+)$1	250	65	69	11.9999
GAGG	chr17:7126864-7127069(+)$1	205	35	39	11.9999
GAGG	chr19:7997513-7997738(-)$1	225	131	135	11.9999
GAGG	chr16:24979878-24980128(-)$1	250	144	148	11.9999
GAGG	chr6:13599195-13599480(+)$1	285	75	79	11.9999
GAGG	chr17:77080598-77080856(+)$1	258	82	86	11.9999
GAGG	chr2:216213707-216213996(+)$1	289	142	146	11.9999
gagg	chr16:23546483-23546780(-)$1	297	34	38	11.9999
GAGG	chr11:46396106-46396317(+)$1	211	151	155	11.9999
GAGG	chr3:48456107-48456312(-)$1	205	18	22	11.9999
GAGG	chr12:50536762-50537028(-)$1	266	2	6	11.9999
GAGG	chr16:28909452-28909660(+)$1	208	110	114	11.9999
GAGG	chr9:116267618-116267905(+)$1	287	2	6	11.9999
GAGG	chr12:57624614-57624925(+)$1	311	120	124	11.9999
GAGG	chr17:2266749-2266993(+)$1	244	42	46	11.9999
GAGG	chr14:24613300-24613507(-)$1	207	53	57	11.9999
GAGG	chr8:134268870-134269165(-)$1	295	80	84	11.9999
GAGG	chr2:74592538-74592809(-)$1	271	28	32	11.9999
GAGG	chr17:27894173-27894507(+)$1	334	44	48	11.9999
GAGG	chr11:64882283-64882497(+)$1	214	18	22	11.9999
GAGG	chr20:3846301-3846546(+)$1	245	65	69	11.9999
GAGG	chr3:49723394-49723599(-)$1	205	14	18	11.9999
GAGG	chr1:52824830-52825092(-)$1	262	217	221	11.9999
GAGG	chr17:41364251-41364513(+)$1	262	81	85	11.9999
GAGG	chr17:48560612-48560865(+)$1	253	121	125	11.9999
GAGG	chr19:46124640-46124888(-)$1	248	83	87	11.9999
GAGG	chr11:800442-800651(-)$1	209	57	61	11.9999
GAGG	chr3:196657583-196657931(+)$1	348	168	172	11.9999
GAGG	chr3:49135746-49135997(-)$1	251	111	115	11.9999
GAGG	chr3:51978799-51979065(+)$1	266	1	5	11.9999
GAGG	chr5:176915005-176915267(-)$1	262	58	62	11.9999
GAGG	chr3:48669094-48669330(-)$1	236	24	28	11.9999
GAGG	chr16:88782726-88782961(-)$1	235	84	88	11.9999
GAGG	chr19:10197826-10198077(+)$1	251	15	19	11.9999
GAGG	chr16:4564475-4564717(-)$1	242	21	25	11.9999
GAGG	chr9:139888126-139888397(+)$1	271	171	175	11.9999
GAGG	chr19:36504129-36504418(-)$1	289	0	4	11.9999
GAGG	chr5:176950856-176951116(-)$1	260	139	143	11.9999
GAGG	chr19:36592018-36592290(+)$1	272	113	117	11.9999
GAGG	chr3:38172985-38173214(-)$1	229	18	22	11.9999
GAGG	chr20:32258394-32258657(-)$1	263	79	83	11.9999
GAGG	chr2:99136388-99136671(+)$1	283	89	93	11.9999

#otherMatches

#Struct PSSM
JJJc	chr9:117063624-117063842(+)$1	218	23	27	11.9999
b]ee	chr20:60909976-60910189(-)$1	213	186	190	11.9999
]ccc	chr5:134131577-134131845(+)$1	268	260	264	11.9999
c]bb	chr8:145065265-145065486(+)$1	221	120	124	11.9999
oood	chr2:220251691-220251922(-)$1	231	64	68	11.9999
::HH	chr21:45745973-45746197(+)$1	224	40	44	11.9999
ddd:	chr12:49495150-49495405(-)$1	255	124	128	11.9999
d:dd	chr2:97507694-97507991(-)$1	297	203	207	11.9999
DDDD	chr1:21929195-21929423(-)$1	228	46	50	11.9999
[ccc	chr20:61914070-61914276(+)$1	206	37	41	11.9999
D}CC	chr17:46051685-46051950(+)$1	265	206	210	11.9999
DDDD	chr17:7748204-7748437(+)$1	233	23	27	11.9999
%%bb	chr2:27261253-27261483(+)$1	230	34	38	11.9999
====	chr20:60909478-60909685(-)$1	207	54	58	11.9999
A}BB	chr13:23949117-23949412(-)$1	295	152	156	11.9999
dddd	chr11:67803827-67804098(+)$1	271	18	22	11.9999
offf	chr2:27261814-27262028(+)$1	214	30	34	11.9999
]bb]	chr18:706366-706648(-)$1	282	198	202	11.9999
CC:c	chr14:23444180-23444414(-)$1	234	12	16	11.9999
nnnc	chr2:74683237-74683500(+)$1	263	37	41	11.9999
D:dd	chr11:75147910-75148155(-)$1	245	18	22	11.9999
gggg	chr16:70517763-70517972(-)$1	209	18	22	11.9999
GLLL	chr16:68265724-68266024(-)$1	300	29	33	11.9999
a333	chr1:1685953-1686211(-)$1	258	236	240	11.9999
ccc[	chr17:19559761-19559988(+)$1	227	71	75	11.9999
ddd[	chr3:47889857-47890086(+)$1	229	65	69	11.9999
22cc	chr2:242598424-242598701(+)$1	277	168	172	11.9999
fffB	chr19:42399325-42399577(+)$1	252	126	130	11.9999
::hh	chr15:91498054-91498281(+)$1	227	14	18	11.9999
::dd	chr17:76171023-76171279(-)$1	256	127	131	11.9999
B{DD	chr2:241463199-241463557(-)$1	358	38	42	11.9999
FFFF	chr17:79639450-79639711(+)$1	261	11	15	11.9999
ffgg	chr22:47290580-47290843(+)$1	263	159	163	11.9999
GGGG	chr16:711496-711703(+)$1	207	13	17	11.9999
mmmc	chr9:123233989-123234216(-)$1	227	157	161	11.9999
HHHH	chr19:41250433-41250684(-)$1	251	188	192	11.9999
hhhh	chr9:117008057-117008290(+)$1	233	32	36	11.9999
ccco	chr12:30867808-30868077(-)$1	269	122	126	11.9999
CCC{	chr6:31922743-31922973(-)$1	230	3	7	11.9999
ooff	chr14:21555121-21555362(+)$1	241	140	144	11.9999
[ccc	chr12:112130556-112130804(+)$1	248	69	73	11.9999
c[bb	chr12:56566105-56566344(-)$1	239	23	27	11.9999
f]a]	chrX:48434143-48434393(+)$1	250	65	69	11.9999
e[dd	chr17:7126864-7127069(+)$1	205	35	39	11.9999
gggg	chr19:7997513-7997738(-)$1	225	131	135	11.9999
ffff	chr16:24979878-24980128(-)$1	250	144	148	11.9999
dddd	chr6:13599195-13599480(+)$1	285	75	79	11.9999
d]bb	chr17:77080598-77080856(+)$1	258	82	86	11.9999
FF}A	chr2:216213707-216213996(+)$1	289	142	146	11.9999
ffff	chr16:23546483-23546780(-)$1	297	34	38	11.9999
d"""	chr11:46396106-46396317(+)$1	211	151	155	11.9999
dddd	chr3:48456107-48456312(-)$1	205	18	22	11.9999
:EEE	chr12:50536762-50537028(-)$1	266	2	6	11.9999
bb]d	chr16:28909452-28909660(+)$1	208	110	114	11.9999
GGGG	chr9:116267618-116267905(+)$1	287	2	6	11.9999
HHHH	chr12:57624614-57624925(+)$1	311	120	124	11.9999
qqqq	chr17:2266749-2266993(+)$1	244	42	46	11.9999
HHHc	chr14:24613300-24613507(-)$1	207	53	57	11.9999
IIII	chr8:134268870-134269165(-)$1	295	80	84	11.9999
b(((	chr2:74592538-74592809(-)$1	271	28	32	11.9999
d22a	chr17:27894173-27894507(+)$1	334	44	48	11.9999
{BBJ	chr11:64882283-64882497(+)$1	214	18	22	11.9999
mmmm	chr20:3846301-3846546(+)$1	245	65	69	11.9999
gggg	chr3:49723394-49723599(-)$1	205	14	18	11.9999
GGGG	chr1:52824830-52825092(-)$1	262	217	221	11.9999
cccb	chr17:41364251-41364513(+)$1	262	81	85	11.9999
lldd	chr17:48560612-48560865(+)$1	253	121	125	11.9999
22cc	chr19:46124640-46124888(-)$1	248	83	87	11.9999
====	chr11:800442-800651(-)$1	209	57	61	11.9999
b]bb	chr3:196657583-196657931(+)$1	348	168	172	11.9999
""cc	chr3:49135746-49135997(-)$1	251	111	115	11.9999
FFFF	chr3:51978799-51979065(+)$1	266	1	5	11.9999
D:::	chr5:176915005-176915267(-)$1	262	58	62	11.9999
gggg	chr3:48669094-48669330(-)$1	236	24	28	11.9999
[ddd	chr16:88782726-88782961(-)$1	235	84	88	11.9999
gggg	chr19:10197826-10198077(+)$1	251	15	19	11.9999
ffff	chr16:4564475-4564717(-)$1	242	21	25	11.9999
JJJJ	chr9:139888126-139888397(+)$1	271	171	175	11.9999
::GG	chr19:36504129-36504418(-)$1	289	0	4	11.9999
eeee	chr5:176950856-176951116(-)$1	260	139	143	11.9999
ddd2	chr19:36592018-36592290(+)$1	272	113	117	11.9999
eeee	chr3:38172985-38173214(-)$1	229	18	22	11.9999
eee[	chr20:32258394-32258657(-)$1	263	79	83	11.9999
c]cc	chr2:99136388-99136671(+)$1	283	89	93	11.9999

#DB
((((	chr9:117063624-117063842(+)$1	1	23	27	11.9999
).))	chr20:60909976-60910189(-)$1	1	186	190	11.9999
.)))	chr5:134131577-134131845(+)$1	1	260	264	11.9999
).))	chr8:145065265-145065486(+)$1	1	120	124	11.9999
...)	chr2:220251691-220251922(-)$1	1	64	68	11.9999
..((	chr21:45745973-45746197(+)$1	1	40	44	11.9999
))).	chr12:49495150-49495405(-)$1	1	124	128	11.9999
).((	chr2:97507694-97507991(-)$1	1	203	207	11.9999
((((	chr1:21929195-21929423(-)$1	1	46	50	11.9999
.(((	chr20:61914070-61914276(+)$1	1	37	41	11.9999
).))	chr17:46051685-46051950(+)$1	1	206	210	11.9999
((((	chr17:7748204-7748437(+)$1	1	23	27	11.9999
..((	chr2:27261253-27261483(+)$1	1	34	38	11.9999
((((	chr20:60909478-60909685(-)$1	1	54	58	11.9999
).))	chr13:23949117-23949412(-)$1	1	152	156	11.9999
((((	chr11:67803827-67804098(+)$1	1	18	22	11.9999
.)))	chr2:27261814-27262028(+)$1	1	30	34	11.9999
.)).	chr18:706366-706648(-)$1	1	198	202	11.9999
((.(	chr14:23444180-23444414(-)$1	1	12	16	11.9999
...)	chr2:74683237-74683500(+)$1	1	37	41	11.9999
(.((	chr11:75147910-75148155(-)$1	1	18	22	11.9999
((((	chr16:70517763-70517972(-)$1	1	18	22	11.9999
(...	chr16:68265724-68266024(-)$1	1	29	33	11.9999
)...	chr1:1685953-1686211(-)$1	1	236	240	11.9999
(((.	chr17:19559761-19559988(+)$1	1	71	75	11.9999
(((.	chr3:47889857-47890086(+)$1	1	65	69	11.9999
..))	chr2:242598424-242598701(+)$1	1	168	172	11.9999
))))	chr19:42399325-42399577(+)$1	1	126	130	11.9999
..((	chr15:91498054-91498281(+)$1	1	14	18	11.9999
..((	chr17:76171023-76171279(-)$1	1	127	131	11.9999
(.((	chr2:241463199-241463557(-)$1	1	38	42	11.9999
((((	chr17:79639450-79639711(+)$1	1	11	15	11.9999
))((	chr22:47290580-47290843(+)$1	1	159	163	11.9999
((((	chr16:711496-711703(+)$1	1	13	17	11.9999
...)	chr9:123233989-123234216(-)$1	1	157	161	11.9999
))))	chr19:41250433-41250684(-)$1	1	188	192	11.9999
))))	chr9:117008057-117008290(+)$1	1	32	36	11.9999
(((.	chr12:30867808-30868077(-)$1	1	122	126	11.9999
(((.	chr6:31922743-31922973(-)$1	1	3	7	11.9999
..))	chr14:21555121-21555362(+)$1	1	140	144	11.9999
.(((	chr12:112130556-112130804(+)$1	1	69	73	11.9999
(.((	chr12:56566105-56566344(-)$1	1	23	27	11.9999
).).	chrX:48434143-48434393(+)$1	1	65	69	11.9999
(.((	chr17:7126864-7127069(+)$1	1	35	39	11.9999
((((	chr19:7997513-7997738(-)$1	1	131	135	11.9999
((((	chr16:24979878-24980128(-)$1	1	144	148	11.9999
))))	chr6:13599195-13599480(+)$1	1	75	79	11.9999
).))	chr17:77080598-77080856(+)$1	1	82	86	11.9999
)).)	chr2:216213707-216213996(+)$1	1	142	146	11.9999
((((	chr16:23546483-23546780(-)$1	1	34	38	11.9999
(...	chr11:46396106-46396317(+)$1	1	151	155	11.9999
))))	chr3:48456107-48456312(-)$1	1	18	22	11.9999
.(((	chr12:50536762-50537028(-)$1	1	2	6	11.9999
)).)	chr16:28909452-28909660(+)$1	1	110	114	11.9999
((((	chr9:116267618-116267905(+)$1	1	2	6	11.9999
((((	chr12:57624614-57624925(+)$1	1	120	124	11.9999
....	chr17:2266749-2266993(+)$1	1	42	46	11.9999
((((	chr14:24613300-24613507(-)$1	1	53	57	11.9999
((((	chr8:134268870-134269165(-)$1	1	80	84	11.9999
(...	chr2:74592538-74592809(-)$1	1	28	32	11.9999
)..)	chr17:27894173-27894507(+)$1	1	44	48	11.9999
.(((	chr11:64882283-64882497(+)$1	1	18	22	11.9999
....	chr20:3846301-3846546(+)$1	1	65	69	11.9999
((((	chr3:49723394-49723599(-)$1	1	14	18	11.9999
))))	chr1:52824830-52825092(-)$1	1	217	221	11.9999
((((	chr17:41364251-41364513(+)$1	1	81	85	11.9999
..))	chr17:48560612-48560865(+)$1	1	121	125	11.9999
..))	chr19:46124640-46124888(-)$1	1	83	87	11.9999
((((	chr11:800442-800651(-)$1	1	57	61	11.9999
).))	chr3:196657583-196657931(+)$1	1	168	172	11.9999
..((	chr3:49135746-49135997(-)$1	1	111	115	11.9999
((((	chr3:51978799-51979065(+)$1	1	1	5	11.9999
(...	chr5:176915005-176915267(-)$1	1	58	62	11.9999
))))	chr3:48669094-48669330(-)$1	1	24	28	11.9999
.(((	chr16:88782726-88782961(-)$1	1	84	88	11.9999
((((	chr19:10197826-10198077(+)$1	1	15	19	11.9999
))))	chr16:4564475-4564717(-)$1	1	21	25	11.9999
))))	chr9:139888126-139888397(+)$1	1	171	175	11.9999
..((	chr19:36504129-36504418(-)$1	1	0	4	11.9999
((((	chr5:176950856-176951116(-)$1	1	139	143	11.9999
))).	chr19:36592018-36592290(+)$1	1	113	117	11.9999
((((	chr3:38172985-38173214(-)$1	1	18	22	11.9999
(((.	chr20:32258394-32258657(-)$1	1	79	83	11.9999
).))	chr2:99136388-99136671(+)$1	1	89	93	11.9999

#PSSM
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	

#score	1007.9999999999995
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_UTR_m1_run2.nuc.txt

#NT
UAUGUUUUUUU	chr20:52185114-52185376(-)$1	262	70	81	18.5660
ucuguguauua	chr4:110685484-110685781(-)$1	297	162	173	16.3962
UUUAUGUAUUU	chr10:124817487-124817738(+)$1	251	179	190	17.8113
UCUGUUUAUUU	chr11:85371967-85372224(-)$1	257	29	40	18.7547
UAUGUUUAUCU	chr17:56082363-56082587(-)$1	224	150	161	17.2452
CAUGUGUAUUU	chr12:11148953-11149244(-)$1	291	8	19	19.6037
UCUGUAUAUUU	chr1:36790232-36790559(+)$1	327	162	173	18.3773
AGUGUGUAUUU	chr12:42842173-42842458(+)$1	285	53	64	17.8113
UACAUGUAUUU	chr13:20593657-20593960(+)$1	303	281	292	16.1132
uguguguguuu	chr6:47200271-47200526(-)$1	255	121	132	18.0943
uaugugugugu	chr2:135815651-135815946(+)$1	295	216	227	16.3018
cauguguauuu	chr11:43776745-43777090(+)$1	345	329	340	19.6037
UAUGUAAAUUU	chr5:167975690-167975935(-)$1	245	184	195	16.8679
UAUGUAAAUUU	chr5:167975594-167975862(-)$1	268	111	122	16.8679
UCUUUUUAUUU	chr3:140684465-140684697(+)$1	232	5	16	15.7358
UGUUUGUAUUU	chr5:130762365-130762617(-)$1	252	122	133	18.4716
UGUUUGUAUUU	chr15:65737208-65737581(-)$1	373	138	149	18.4716
UAUGUAUUUUU	chr11:28147267-28147572(+)$1	305	240	251	18.1886
AAUGUGCAUUU	chr1:21100277-21100579(-)$1	302	183	194	15.7358
uauuuguuuuu	chr12:88529502-88529771(-)$1	269	87	98	17.8113
UAUGUUUAUCU	chr17:56082387-56082623(-)$1	236	186	197	17.2452
UAUUUGUAUGU	chr6:4061642-4061894(+)$1	252	146	157	16.6792
UAUGUAUAAUU	chr10:75203882-75204171(-)$1	289	271	282	16.5849
UUUGUGUUUUU	chr5:137088277-137088566(-)$1	289	38	49	18.1886
UAUGUUUAUGU	chr4:159045654-159045970(-)$1	316	258	269	17.4339
UUUGUGUAUUU	chr2:86706138-86706384(+)$1	246	35	46	21.0188
UAAGUGUUUUU	chr12:11090274-11090523(-)$1	249	73	84	16.5849
UAUGUGUUUUC	chr14:39651865-39652128(+)$1	263	73	84	16.3018
UAUGUUUAGUU	chr12:100955406-100955774(+)$1	368	281	292	16.8679
UAUGUGCUUUU	chr12:62959611-62959920(+)$1	309	280	291	16.5849
UAUAUGUGUUU	chrX:70685428-70685832(+)$1	404	207	218	17.0566
uauguguauuu	chr20:56141223-56141447(+)$1	224	67	78	23.6603
uaugugucuuu	chr8:56674873-56675188(-)$1	315	151	162	20.1698
UAUGUGGAUUU	chr18:77897966-77898219(+)$1	253	69	80	19.3207
AAUGUGUAAUU	chr9:21332558-21332873(-)$1	315	139	150	15.5471
UAUGUGUAUUU	chr1:217782230-217782483(-)$1	253	64	75	23.6603
UGUGUUUAUUU	chr1:71530543-71530800(-)$1	257	185	196	19.2264
AAUGUGUUUUU	chr2:69548571-69548905(-)$1	334	43	54	17.1509
UGUAUGUAUUU	chr13:41132005-41132276(-)$1	271	199	210	18.2830
uguguguauau	chr12:49330596-49330882(-)$1	286	58	69	17.2452
uguguguaugu	chr20:48250680-48250987(-)$1	307	138	149	17.5283
ACUGUGUAUUU	chr17:53040240-53040487(-)$1	247	82	93	17.3396
UGUGUGUACUU	chr2:3628017-3628309(+)$1	292	259	270	16.9622
UAUGUGUUUUC	chr14:39651734-39651977(+)$1	243	204	215	16.3018
UACCUGUAUUU	chr6:4064423-4064668(+)$1	245	177	188	15.8301
UAAGUGUCUUU	chr12:69663870-69664132(+)$1	262	28	39	15.9245
UUUGUUUAUUU	chr13:79885982-79886256(-)$1	274	73	84	18.7547
UUUCUGUAUUU	chr7:139784467-139784751(-)$1	284	47	58	17.5283
UGUAUAUAUUU	chr11:85372803-85373030(-)$1	227	150	161	15.6415
UAUGUAAAUUU	chr10:54076769-54077046(+)$1	277	89	100	16.8679
UAAUUGUAUUU	chr11:27516358-27516620(-)$1	262	141	152	16.3962
UAUUUUUAUUU	chr1:217781898-217782158(-)$1	260	212	223	18.3773

#otherMatches

#Struct PSSM
[eeeeennnnn	chr20:60756640-60756869(+)$1	229	101	112	17.7169
"""ddddssss	chr20:52185114-52185376(-)$1	262	70	81	18.5660
eee!!a$$$$$	chr4:110685484-110685781(-)$1	297	162	173	16.3962
555ccc]hhhh	chr10:124817487-124817738(+)$1	251	179	190	17.8113
:::::EEEEE{	chr11:85371967-85372224(-)$1	257	29	40	18.7547
gg[hhhhhhhh	chr17:56082363-56082587(-)$1	224	150	161	17.2452
Dffffffnnnn	chr12:11148953-11149244(-)$1	291	8	19	19.6037
[a[dddd####	chr1:36790232-36790559(+)$1	327	162	173	18.3773
GGGGGG:::ff	chr12:42842173-42842458(+)$1	285	53	64	17.8113
GG}IIIIIIII	chr13:20593657-20593960(+)$1	303	281	292	16.1132
333dddd]ggg	chr6:47200271-47200526(-)$1	255	121	132	18.0943
=========mm	chr2:135815651-135815946(+)$1	295	216	227	16.3018
gggggGGGGGG	chr11:43776745-43777090(+)$1	345	329	340	19.6037
hhhhhhhh22g	chr5:167975690-167975935(-)$1	245	184	195	16.8679
hhhhhhhh22e	chr5:167975594-167975862(-)$1	268	111	122	16.8679
EE:::::::::	chr3:140684465-140684697(+)$1	232	5	16	15.7358
ee22eeeee22	chr5:130762365-130762617(-)$1	252	122	133	18.4716
###ffffffpp	chr15:65737208-65737581(-)$1	373	138	149	18.4716
qqccc333eee	chr11:28147267-28147572(+)$1	305	240	251	18.1886
444eeeee444	chr1:21100277-21100579(-)$1	302	183	194	15.7358
dd!!bbsssss	chr12:88529502-88529771(-)$1	269	87	98	17.8113
~EEEEE:::::	chr17:56082387-56082623(-)$1	236	186	197	17.2452
ddd!!ccc[bb	chr6:4061642-4061894(+)$1	252	146	157	16.6792
E@@@@@@@@@@	chr10:75203882-75204171(-)$1	289	271	282	16.5849
:::::eeeeec	chr5:137088277-137088566(-)$1	289	38	49	18.1886
J:eeeee[ccc	chr4:159045654-159045970(-)$1	316	258	269	17.4339
ffff4444iii	chr2:86706138-86706384(+)$1	246	35	46	21.0188
c22ggggggg3	chr12:11090274-11090523(-)$1	249	73	84	16.5849
iiii]ccc22e	chr14:39651865-39652128(+)$1	263	73	84	16.3018
hhhhhhhh666	chr12:100955406-100955774(+)$1	368	281	292	16.8679
||||EEEEE~~	chr12:62959611-62959920(+)$1	309	280	291	16.5849
==========h	chrX:70685428-70685832(+)$1	404	207	218	17.0566
iiiiiiiii]i	chr20:56141223-56141447(+)$1	224	67	78	23.6603
:::EEEEE}GG	chr8:56674873-56675188(-)$1	315	151	162	20.1698
b22a]bb::::	chr18:77897966-77898219(+)$1	253	69	80	19.3207
:::gggggggp	chr9:21332558-21332873(-)$1	315	139	150	15.5471
ff!!bb[dddd	chr1:217782230-217782483(-)$1	253	64	75	23.6603
meeeee22ddd	chr1:71530543-71530800(-)$1	257	185	196	19.2264
fffff666666	chr2:69548571-69548905(-)$1	334	43	54	17.1509
c55555ggggg	chr13:41132005-41132276(-)$1	271	199	210	18.2830
{AKKBBNNNNN	chr12:49330596-49330882(-)$1	286	58	69	17.2452
GGGG}FFFFFF	chr20:48250680-48250987(-)$1	307	138	149	17.5283
::dddd!!hhh	chr17:53040240-53040487(-)$1	247	82	93	17.3396
ccc]ddddEEE	chr2:3628017-3628309(+)$1	292	259	270	16.9622
iiii]ccc22e	chr14:39651734-39651977(+)$1	243	204	215	16.3018
[bb[bbqqqqq	chr6:4064423-4064668(+)$1	245	177	188	15.8301
IIIIIII:EEE	chr12:69663870-69664132(+)$1	262	28	39	15.9245
::::=======	chr13:79885982-79886256(-)$1	274	73	84	18.7547
DDDDIIIIIII	chr7:139784467-139784751(-)$1	284	47	58	17.5283
ZZZIIIIIIII	chr11:85372803-85373030(-)$1	227	150	161	15.6415
HHHHH:ccc[e	chr10:54076769-54077046(+)$1	277	89	100	16.8679
JJJJJJJJLLL	chr11:27516358-27516620(-)$1	262	141	152	16.3962
vvvvvvvvvvv	chr1:217781898-217782158(-)$1	260	212	223	18.3773

#DB
.(((((.....	chr20:60756640-60756869(+)$1	1	101	112	17.7169
...((((....	chr20:52185114-52185376(-)$1	1	70	81	18.5660
(((..(.....	chr4:110685484-110685781(-)$1	1	162	173	16.3962
...))).))))	chr10:124817487-124817738(+)$1	1	179	190	17.8113
.....(((((.	chr11:85371967-85372224(-)$1	1	29	40	18.7547
((.((((((((	chr17:56082363-56082587(-)$1	1	150	161	17.2452
(((((((....	chr12:11148953-11149244(-)$1	1	8	19	19.6037
.(.((((....	chr1:36790232-36790559(+)$1	1	162	173	18.3773
((((((...((	chr12:42842173-42842458(+)$1	1	53	64	17.8113
)).))))))))	chr13:20593657-20593960(+)$1	1	281	292	16.1132
...)))).)))	chr6:47200271-47200526(-)$1	1	121	132	18.0943
(((((((((..	chr2:135815651-135815946(+)$1	1	216	227	16.3018
)))))))))))	chr11:43776745-43777090(+)$1	1	329	340	19.6037
))))))))..)	chr5:167975690-167975935(-)$1	1	184	195	16.8679
))))))))..)	chr5:167975594-167975862(-)$1	1	111	122	16.8679
((.........	chr3:140684465-140684697(+)$1	1	5	16	15.7358
))..)))))..	chr5:130762365-130762617(-)$1	1	122	133	18.4716
...((((((..	chr15:65737208-65737581(-)$1	1	138	149	18.4716
..)))...)))	chr11:28147267-28147572(+)$1	1	240	251	18.1886
...)))))...	chr1:21100277-21100579(-)$1	1	183	194	15.7358
((..((.....	chr12:88529502-88529771(-)$1	1	87	98	17.8113
.))))).....	chr17:56082387-56082623(-)$1	1	186	197	17.2452
(((..(((.((	chr6:4061642-4061894(+)$1	1	146	157	16.6792
)..........	chr10:75203882-75204171(-)$1	1	271	282	16.5849
.....((((((	chr5:137088277-137088566(-)$1	1	38	49	18.1886
).(((((.(((	chr4:159045654-159045970(-)$1	1	258	269	17.4339
))))....)))	chr2:86706138-86706384(+)$1	1	35	46	21.0188
)..))))))).	chr12:11090274-11090523(-)$1	1	73	84	16.5849
)))).)))..)	chr14:39651865-39652128(+)$1	1	73	84	16.3018
))))))))...	chr12:100955406-100955774(+)$1	1	281	292	16.8679
....)))))..	chr12:62959611-62959920(+)$1	1	280	291	16.5849
))))))))))(	chrX:70685428-70685832(+)$1	1	207	218	17.0566
))))))))).)	chr20:56141223-56141447(+)$1	1	67	78	23.6603
...))))).))	chr8:56674873-56675188(-)$1	1	151	162	20.1698
)..).))....	chr18:77897966-77898219(+)$1	1	69	80	19.3207
...(((((((.	chr9:21332558-21332873(-)$1	1	139	150	15.5471
((..((.((((	chr1:217782230-217782483(-)$1	1	64	75	23.6603
.)))))..)))	chr1:71530543-71530800(-)$1	1	185	196	19.2264
)))))......	chr2:69548571-69548905(-)$1	1	43	54	17.1509
).....)))))	chr13:41132005-41132276(-)$1	1	199	210	18.2830
.(..((.....	chr12:49330596-49330882(-)$1	1	58	69	17.2452
)))).))))))	chr20:48250680-48250987(-)$1	1	138	149	17.5283
..((((..(((	chr17:53040240-53040487(-)$1	1	82	93	17.3396
))).)))))))	chr2:3628017-3628309(+)$1	1	259	270	16.9622
)))).)))..)	chr14:39651734-39651977(+)$1	1	204	215	16.3018
.((.((.....	chr6:4064423-4064668(+)$1	1	177	188	15.8301
(((((((.(((	chr12:69663870-69664132(+)$1	1	28	39	15.9245
....(((((((	chr13:79885982-79886256(-)$1	1	73	84	18.7547
(((((((((((	chr7:139784467-139784751(-)$1	1	47	58	17.5283
...))))))))	chr11:85372803-85373030(-)$1	1	150	161	15.6415
(((((.(((.(	chr10:54076769-54077046(+)$1	1	89	100	16.8679
((((((((...	chr11:27516358-27516620(-)$1	1	141	152	16.3962
...........	chr1:217781898-217782158(-)$1	1	212	223	18.3773

#PSSM
U : 0.69	u : 0.15	A : 0.11	C : 0.01	c : 0.01	
A : 0.52	G : 0.13	U : 0.09	a : 0.09	C : 0.07	g : 0.05	c : 0.01	
U : 0.73	u : 0.16	A : 0.05	C : 0.03	
G : 0.58	g : 0.15	U : 0.11	A : 0.09	C : 0.03	u : 0.01	
U : 0.83	u : 0.16	
G : 0.49	U : 0.20	g : 0.16	A : 0.13	
U : 0.71	u : 0.16	A : 0.05	C : 0.03	G : 0.01	
A : 0.64	U : 0.15	a : 0.09	g : 0.03	u : 0.01	G : 0.01	c : 0.01	C : 0.01	
U : 0.75	u : 0.16	A : 0.03	G : 0.01	C : 0.01	
U : 0.75	u : 0.11	C : 0.03	g : 0.03	G : 0.03	a : 0.01	
U : 0.79	u : 0.15	C : 0.03	a : 0.01	

#score	938.8113207547161
#seq	53
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_transcript_m2_run1.nuc.txt

#NT
Cuuuuuuuuuuuuuuuu	chr10:21838504-21838772(+)$1	268	83	100	45.8076
auuuuuuuuuuuuuuuu	chr10:21839770-21840046(+)$1	276	85	102	43.4999
cuauuuuuuuuuuuuuu	chr4:39862523-39862783(-)$1	260	80	97	41.4807
auuuuuuuuuuuuuuuu	chr3:48979851-48980111(+)$1	260	226	243	43.4999
cuuuuuuuuuuuuuuuu	chr3:71328160-71328415(-)$1	255	70	87	45.8076
Cuuuuuuuuuuuuuuuu	chr20:30957444-30957655(+)$1	211	76	93	45.8076
aauuuuuuuuuuuuuuu	chr1:155283902-155284144(+)$1	242	75	92	39.6538
cuguuuuguuuuuuuuu	chr4:184032759-184033020(+)$1	261	84	101	36.5769
cuuuuuuuuuuuuuuuu	chr20:62348603-62348857(+)$1	254	80	97	45.8076
ccuuuuuuuuuuuuuua	chr3:47203263-47203505(-)$1	242	88	105	37.2499
aauuuuuuuuucuuuuu	chr6:1918667-1918919(-)$1	252	85	102	35.0384
cuuuuuuuucuuuuuug	chr16:74685414-74685629(-)$1	215	91	108	36.4807
Cuuuuuuuuuuuuuuuu	chr4:6832048-6832304(+)$1	256	81	98	45.8076
guuuuuuuuuuuuuuuu	chr10:14636349-14636606(-)$1	257	89	106	43.0192
cuuuuuuuuuuuuuuuu	chr6:34275785-34276000(-)$1	215	53	70	45.8076
guuuuuuuuuuuuuuuu	chr18:60443753-60443968(+)$1	215	88	105	43.0192
guuuuuuuuuuuuuuuu	chr11:96021537-96021810(-)$1	273	84	101	43.0192
cucuuuuuuuuuuuuuu	chr12:121313265-121313529(-)$1	264	85	102	41.4807
aaauuuuuuuuuuuuuu	chr12:121323798-121324036(-)$1	238	74	91	35.3269
Cuuuuuuuuuuuuuuuu	chr6:157148811-157149066(+)$1	255	76	93	45.8076
Cuuuuuuuuuuuuucuu	chr5:109029953-109030223(+)$1	270	88	105	41.2884
Cuuuuuuuauuuuuuau	chr6:76338931-76339177(+)$1	246	74	91	36.3846
Auuuuuuuuuuuuuuuu	chr20:31000313-31000586(+)$1	273	83	100	43.4999
cuuuucuuuuuuuuuuu	chr20:32659009-32659274(+)$1	265	86	103	41.1923
Cuuuuuuuuuuuuuuuu	chr2:113413697-113413956(+)$1	259	67	84	45.8076
cuuuucuuuucuuuuuu	chr18:67085783-67086030(+)$1	247	84	101	36.3846
cuuuuuuuuuuuuuuuu	chr12:124845513-124845771(-)$1	258	82	99	45.8076
Cuuuuuuuuuuuuuuuu	chr14:36094190-36094461(-)$1	271	81	98	45.8076
AAuuuuuuuuuuuuuuu	chr1:231390406-231390671(+)$1	265	93	110	39.6538
Cuuuuuuuuuuuuuuuu	chr4:39706405-39706667(+)$1	262	83	100	45.8076
cuuuuuuuuuuuuuuuu	chr20:48319554-48319779(-)$1	225	56	73	45.8076
Cuuuuuuuuuuuuuggu	chr5:55264844-55265121(-)$1	277	92	109	36.4807
Auuuuuuuuuuuuuuuu	chr13:33089231-33089506(-)$1	275	212	229	43.4999
cuuguuuuuuuuuuuuu	chr20:32857744-32857995(-)$1	251	206	223	41.3846
Guuuuuuuuuuuuuuuu	chr18:19164943-19165205(-)$1	262	85	102	43.0192
CCUUUUUUUUUUUUUUA	chr7:158565402-158565666(-)$1	264	65	82	37.2499
CUUUUUUUUUUUUCUUU	chr6:158981839-158982045(+)$1	206	7	24	40.9999
cuuuuuuuuuuuuuuuu	chr20:48272304-48272570(-)$1	266	86	103	45.8076
GAUUUUUUUUUUUUUUU	chr12:124015502-124015752(-)$1	250	73	90	39.1730
cuuuuuuuuuuuuuuuu	chr16:89522797-89523017(-)$1	220	50	67	45.8076
cuuuuuuuuuuuuuuuu	chr16:28214443-28214700(-)$1	257	86	103	45.8076
cuucuuuuuuuuuuuuu	chr3:171769795-171770022(+)$1	227	79	96	41.5769
guucuuuuuuuuuuuuu	chr2:180113533-180113748(-)$1	215	87	104	38.7884
Auucuuuuuuuuuuuuu	chr2:112661868-112662119(+)$1	251	84	101	39.2692
cuuuuuuuuuuuuuuuu	chr12:11271476-11271696(-)$1	220	77	94	45.8076
Cuuuuuuuuuuuuuuuu	chr17:28805507-28805737(+)$1	230	67	84	45.8076
Cuuuuucuuuuuuuuuc	chr15:56492843-56493095(-)$1	252	84	101	36.4807
Cuuuuuuuuuuuuuuuu	chr6:87888786-87889043(+)$1	257	89	106	45.8076
AUCuuuuuuuuuuuuuu	chr22:40746045-40746315(+)$1	270	89	106	39.1730
Cuuuuuuucuuuuucuu	chr8:17754830-17755042(-)$1	212	82	99	36.5769
Cuuuuuuuuuucuuuuu	chr16:67975366-67975622(-)$1	256	88	105	41.1923

#otherMatches

#Struct PSSM
::::JJJJJJJJJJJJJ	chr3:171505823-171506085(-)$1	262	85	102	39.0769
===============::	chr10:21838504-21838772(+)$1	268	83	100	45.8076
cc22eeeee22bb333d	chr10:21839770-21840046(+)$1	276	85	102	43.4999
!!attttttttttta22	chr4:39862523-39862783(-)$1	260	80	97	41.4807
@@@@@@@@@@@@@@@@@	chr3:48979851-48980111(+)$1	260	226	243	43.4999
:::::::::::::::::	chr3:71328160-71328415(-)$1	255	70	87	45.8076
DD:::::::::::::::	chr20:30957444-30957655(+)$1	211	76	93	45.8076
zzzzzzzzzzzzggggg	chr1:155283902-155284144(+)$1	242	75	92	39.6538
hhhhhhh22bb::::::	chr4:184032759-184033020(+)$1	261	84	101	36.5769
:::::::::::::::::	chr20:62348603-62348857(+)$1	254	80	97	45.8076
DDD::::::::::::::	chr3:47203263-47203505(-)$1	242	88	105	37.2499
F::::JJJJJJJJJJKK	chr6:1918667-1918919(-)$1	252	85	102	35.0384
::::::::::::::fff	chr16:74685414-74685629(-)$1	215	91	108	36.4807
^^^^^^^^^^^^^^^^^	chr4:6832048-6832304(+)$1	256	81	98	45.8076
::::::::::::::::i	chr10:14636349-14636606(-)$1	257	89	106	43.0192
:::::::::::::::::	chr6:34275785-34276000(-)$1	215	53	70	45.8076
=::::::::::::::::	chr18:60443753-60443968(+)$1	215	88	105	43.0192
^^^^^^^^^^^^^^^^^	chr11:96021537-96021810(-)$1	273	84	101	43.0192
zzzzzzzzzzzzzzzz=	chr12:121313265-121313529(-)$1	264	85	102	41.4807
===mmmm==========	chr12:121323798-121324036(-)$1	238	74	91	35.3269
:::::::::::::::::	chr6:157148811-157149066(+)$1	255	76	93	45.8076
hhhhh55555eeeee::	chr5:109029953-109030223(+)$1	270	88	105	41.2884
:::::::::::::::::	chr6:76338931-76339177(+)$1	246	74	91	36.3846
sssssss==========	chr20:31000313-31000586(+)$1	273	83	100	43.4999
:::::::::::::::::	chr20:32659009-32659274(+)$1	265	86	103	41.1923
:::::::::::::::::	chr2:113413697-113413956(+)$1	259	67	84	45.8076
:::::::::::::::::	chr18:67085783-67086030(+)$1	247	84	101	36.3846
d^^^^^^^^^^^^^^^^	chr12:124845513-124845771(-)$1	258	82	99	45.8076
:::::::::::::::::	chr14:36094190-36094461(-)$1	271	81	98	45.8076
hhoooooohhhhhhhh]	chr1:231390406-231390671(+)$1	265	93	110	39.6538
:::::::::::::::::	chr4:39706405-39706667(+)$1	262	83	100	45.8076
:::::::::::::::::	chr20:48319554-48319779(-)$1	225	56	73	45.8076
c:::::::::::::===	chr5:55264844-55265121(-)$1	277	92	109	36.4807
FFF:::::ddddooooo	chr13:33089231-33089506(-)$1	275	212	229	43.4999
:ggggggg^^^^^^^^^	chr20:32857744-32857995(-)$1	251	206	223	41.3846
>>>>>>>>>>>======	chr18:19164943-19165205(-)$1	262	85	102	43.0192
^^^^^^^^^^^^^^^^^	chr7:158565402-158565666(-)$1	264	65	82	37.2499
JJJJJJPPPPPPPFFFF	chr6:158981839-158982045(+)$1	206	7	24	40.9999
dddyyyyyyyyyyyyyy	chr20:48272304-48272570(-)$1	266	86	103	45.8076
BB:::::::::::::::	chr12:124015502-124015752(-)$1	250	73	90	39.1730
^^^^^^^^^^^^^^^^^	chr16:89522797-89523017(-)$1	220	50	67	45.8076
d::::::::::::::::	chr16:28214443-28214700(-)$1	257	86	103	45.8076
^^^^^^^^^^^^^^^^^	chr3:171769795-171770022(+)$1	227	79	96	41.5769
ee[avvvvvvvvvvvvv	chr2:180113533-180113748(-)$1	215	87	104	38.7884
gtttttttttttggggg	chr2:112661868-112662119(+)$1	251	84	101	39.2692
:::::::::::::::::	chr12:11271476-11271696(-)$1	220	77	94	45.8076
:::::::::::::::::	chr17:28805507-28805737(+)$1	230	67	84	45.8076
^^^^^^^^^^^^^^^ee	chr15:56492843-56493095(-)$1	252	84	101	36.4807
FPPPPPPPFFFFFF{HH	chr6:87888786-87889043(+)$1	257	89	106	45.8076
dd:::::::::::::ii	chr22:40746045-40746315(+)$1	270	89	106	39.1730
FFF::::::::::::::	chr8:17754830-17755042(-)$1	212	82	99	36.5769
^^^^^^^^^^^^^^^^^	chr16:67975366-67975622(-)$1	256	88	105	41.1923

#DB
....)))))))))))))	chr3:171505823-171506085(-)$1	1	85	102	39.0769
)))))))))))))))..	chr10:21838504-21838772(+)$1	1	83	100	45.8076
))..)))))..))...)	chr10:21839770-21840046(+)$1	1	85	102	43.4999
..(...........)..	chr4:39862523-39862783(-)$1	1	80	97	41.4807
.................	chr3:48979851-48980111(+)$1	1	226	243	43.4999
.................	chr3:71328160-71328415(-)$1	1	70	87	45.8076
((...............	chr20:30957444-30957655(+)$1	1	76	93	45.8076
............)))))	chr1:155283902-155284144(+)$1	1	75	92	39.6538
)))))))..))......	chr4:184032759-184033020(+)$1	1	84	101	36.5769
.................	chr20:62348603-62348857(+)$1	1	80	97	45.8076
(((..............	chr3:47203263-47203505(-)$1	1	88	105	37.2499
)....((((((((((..	chr6:1918667-1918919(-)$1	1	85	102	35.0384
..............(((	chr16:74685414-74685629(-)$1	1	91	108	36.4807
.................	chr4:6832048-6832304(+)$1	1	81	98	45.8076
................(	chr10:14636349-14636606(-)$1	1	89	106	43.0192
.................	chr6:34275785-34276000(-)$1	1	53	70	45.8076
)................	chr18:60443753-60443968(+)$1	1	88	105	43.0192
.................	chr11:96021537-96021810(-)$1	1	84	101	43.0192
................)	chr12:121313265-121313529(-)$1	1	85	102	41.4807
(((....))))))))))	chr12:121323798-121324036(-)$1	1	74	91	35.3269
.................	chr6:157148811-157149066(+)$1	1	76	93	45.8076
))))).....)))))..	chr5:109029953-109030223(+)$1	1	88	105	41.2884
.................	chr6:76338931-76339177(+)$1	1	74	91	36.3846
.......))))))))))	chr20:31000313-31000586(+)$1	1	83	100	43.4999
.................	chr20:32659009-32659274(+)$1	1	86	103	41.1923
.................	chr2:113413697-113413956(+)$1	1	67	84	45.8076
.................	chr18:67085783-67086030(+)$1	1	84	101	36.3846
(................	chr12:124845513-124845771(-)$1	1	82	99	45.8076
.................	chr14:36094190-36094461(-)$1	1	81	98	45.8076
((......)))))))).	chr1:231390406-231390671(+)$1	1	93	110	39.6538
.................	chr4:39706405-39706667(+)$1	1	83	100	45.8076
.................	chr20:48319554-48319779(-)$1	1	56	73	45.8076
).............(((	chr5:55264844-55265121(-)$1	1	92	109	36.4807
(((.....((((.....	chr13:33089231-33089506(-)$1	1	212	229	43.4999
.(((((((.........	chr20:32857744-32857995(-)$1	1	206	223	41.3846
...........))))))	chr18:19164943-19165205(-)$1	1	85	102	43.0192
.................	chr7:158565402-158565666(-)$1	1	65	82	37.2499
((((((.......((((	chr6:158981839-158982045(+)$1	1	7	24	40.9999
(((..............	chr20:48272304-48272570(-)$1	1	86	103	45.8076
((...............	chr12:124015502-124015752(-)$1	1	73	90	39.1730
.................	chr16:89522797-89523017(-)$1	1	50	67	45.8076
)................	chr16:28214443-28214700(-)$1	1	86	103	45.8076
.................	chr3:171769795-171770022(+)$1	1	79	96	41.5769
((.(.............	chr2:180113533-180113748(-)$1	1	87	104	38.7884
(...........)))))	chr2:112661868-112662119(+)$1	1	84	101	39.2692
.................	chr12:11271476-11271696(-)$1	1	77	94	45.8076
.................	chr17:28805507-28805737(+)$1	1	67	84	45.8076
...............))	chr15:56492843-56493095(-)$1	1	84	101	36.4807
(.......((((((.((	chr6:87888786-87889043(+)$1	1	89	106	45.8076
)).............((	chr22:40746045-40746315(+)$1	1	89	106	39.1730
(((..............	chr8:17754830-17755042(-)$1	1	82	99	36.5769
.................	chr16:67975366-67975622(-)$1	1	88	105	41.1923

#PSSM
c : 0.34	C : 0.32	A : 0.11	a : 0.09	g : 0.07	G : 0.03	
u : 0.80	U : 0.05	a : 0.05	A : 0.03	c : 0.01	C : 0.01	
u : 0.82	U : 0.07	a : 0.03	g : 0.01	c : 0.01	C : 0.01	
u : 0.84	U : 0.05	c : 0.05	A : 0.01	g : 0.01	
u : 0.94	U : 0.05	
u : 0.90	U : 0.05	c : 0.03	
u : 0.92	U : 0.05	c : 0.01	
u : 0.92	U : 0.05	g : 0.01	
u : 0.90	U : 0.05	a : 0.01	c : 0.01	
u : 0.92	U : 0.05	c : 0.01	
u : 0.92	U : 0.05	c : 0.01	
u : 0.90	U : 0.05	c : 0.03	
u : 0.94	U : 0.05	
u : 0.94	U : 0.03	C : 0.01	
u : 0.88	U : 0.05	c : 0.03	g : 0.01	
u : 0.90	U : 0.05	a : 0.01	g : 0.01	
u : 0.88	U : 0.03	a : 0.01	g : 0.01	A : 0.01	c : 0.01	

#score	2176.2307692307695
#seq	52
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_transcript_m2_run1.nuc.txt

#NT
GGGCAGGGAAGACUGUUCUGACUGUACCACCAAUCUCUCUCUGCUCUGUGUCUCACCCUCAUGGCUGUCGGUAGGUCAUGAGUAUGCAGAGGAGAACCUGGGCUUUGCAGGUGUGGUGGAGCCCGAGAACCUGGCCCGGGAGAGGAAGAUGCAGUGGGUGCAGCGGCAGCGGCUGGAGCGCAAGGGCACGGUGAGGGACUCGGGGUCCAGGAGGAGCUGUGUGGGCAGGCACUCAGCCCCAACGGGAACCCAUCCAUGCUGACCCCAGGCCUGCGAGCACC	chr2:219209089-219209391(+)$1	302	14	295	370.5000

#otherMatches

#Struct PSSM
""ddddnnnnndddd333cccffffff]ccc:bb[bboooooobb]bb::FFFFFF{FFFFFFEEEEE:ffffff!!eeeee[eeeee!!allla22eeeeeeeeee]ffffff:::::::::::::hhhhhhhh[ccccccdddd[gggggggbb!!accc[aooooooa]ccc]a22bb]gggggggdddd]ccc22ccchhhhhhhhEEEEE@@@@@@@@@@@FFFFFFFFFFFFfffffflllffffffgggggggcccbbmmmmbb]ccc]ggggg	chr3:58516882-58517186(-)$1	304	19	300	370.5000
ggggggooooooggggggg::BB{FFFFFF:::DDDD{FFFFFF:::ccclllccc:iiiiiiiiipppppppiiiiiiiii:::FFFFFFDDDDeeeeepppppppeeeeeFFFFFF}BB:EEEEEKKCCC{CCC:::::::::::::a[dddd[a[cccmmmmccc]a]dddd]abboooooobb::CCC}CCCYYEEEEEHHHHHHHH:dddd!!dddd!!ffffff!!eeeee%%%%%%bbmmmmbb666666eeeee666666ffffff22ddddd	chr2:219209089-219209391(+)$1	302	14	295	370.5000

#DB
..((((.....))))...))))))))).))).((.((......)).))..((((((.(((((((((((.((((((..(((((.(((((..(...)..)))))))))).)))))).............((((((((.((((((((((.(((((((((..((((.(......).))).)..)).))))))))))).)))..))))))))))))))))...........))))))))))))((((((...))))))((((((((((((....)).))).)))))	chr3:58516882-58517186(-)$1	1	19	300	370.5000
((((((......)))))))..((.((((((...((((.((((((...(((...))).(((((((((.......)))))))))...))))))))))(((((.......))))))))))).)).(((((..(((.(((.............(.((((.(.(((....))).).)))).)((......))..))).)))..))))))))))))).((((..((((..((((((..(((((......((....))......)))))......))))))..)))))	chr2:219209089-219209391(+)$1	1	14	295	370.5000

#PSSM
a : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	A : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
a : 0.50	A : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
u : 0.50	C : 0.50	
a : 0.50	U : 0.50	
c : 0.50	G : 0.50	
c : 0.50	U : 0.50	
u : 0.50	U : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
a : 0.50	A : 0.50	
c : 0.50	C : 0.50	
a : 0.50	U : 0.50	
u : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	A : 0.50	
c : 0.50	C : 0.50	
a : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
a : 0.50	A : 0.50	
c : 0.50	A : 0.50	
u : 0.50	U : 0.50	
c : 0.50	C : 0.50	
u : 0.50	U : 0.50	
c : 0.50	C : 0.50	
u : 0.50	U : 0.50	
c : 0.50	C : 0.50	
a : 0.50	U : 0.50	
a : 0.50	C : 0.50	
c : 0.50	U : 0.50	
u : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	U : 0.50	
u : 0.50	C : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	

#score	741.0
#seq	2
#width	281
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_UTR_m1_run2.nuc.txt

#NT
AUUUUCUUU	chr2:44115632-44115893(-)$1	261	245	254	18.6279
AUUUUUUUU	chr19:39220996-39221250(+)$1	254	100	109	22.8139
AUUUUUUUU	chr2:68405915-68406177(-)$1	262	234	243	22.8139
CUUUUUUUU	chr19:1434988-1435232(+)$1	244	206	215	20.0232
auuuauuuu	chr1:156280252-156280538(-)$1	286	248	257	18.7441
AUUUUUUUC	chr12:53692970-53693228(+)$1	258	68	77	18.2790
AUUUUUUAU	chr18:2803246-2803498(+)$1	252	86	95	18.6279
AUUUUUUUU	chr12:104341549-104341790(+)$1	241	52	61	22.8139
AUUUAUUUU	chr4:103717758-103718004(-)$1	246	224	233	18.7441
AUUUUCUUU	chr1:879501-879747(-)$1	246	88	97	18.6279
AUAUUUUUU	chr17:40463776-40464024(+)$1	248	169	178	18.2790
AUUUUUUUU	chr12:104341396-104341664(+)$1	268	205	214	22.8139
Cuuuuuuuu	chr11:62360886-62361132(-)$1	246	193	202	20.0232
CUUUUUUUU	chr4:177253109-177253364(+)$1	255	95	104	20.0232
AUUUUUGUU	chr15:45010168-45010421(+)$1	253	137	146	18.6279
AAUUUUUUU	chr7:100804269-100804544(+)$1	275	93	102	18.2790
auuauuuuu	chr19:3052979-3053219(-)$1	240	86	95	18.0465
CUUUUUUUU	chr6:75949916-75950174(-)$1	258	48	57	20.0232
AUUUUUUAU	chr9:96326730-96326982(+)$1	252	96	105	18.6279
Cuuuuuuuu	chr5:179041637-179041883(-)$1	246	75	84	20.0232
AUUUUUAUU	chr15:64657702-64658035(-)$1	333	139	148	18.3953
CUUUUUUUU	chr11:5269426-5269686(-)$1	260	203	212	20.0232
guuuuuuuu	chr11:70281346-70281585(+)$1	239	12	21	19.0930
AUUUUUUAU	chr22:19507906-19508162(+)$1	256	187	196	18.6279
CUUUUUUUU	chrX:102930559-102930777(-)$1	218	92	101	20.0232
AUUUUUUGU	chr7:5646097-5646361(+)$1	264	94	103	18.3953
AUUUUAUUU	chr17:4848940-4849218(-)$1	278	96	105	18.6279
ACUUUUUUU	chr8:11696105-11696374(+)$1	269	56	65	18.3953
AUUUUUUUU	chr19:46029979-46030259(+)$1	280	131	140	22.8139
AUUUUUUUU	chr7:23544596-23544866(-)$1	270	259	268	22.8139
AUUUUUUUC	chr20:5095621-5095872(-)$1	251	82	91	18.2790
AUUUUUUUU	chr14:23795198-23795439(+)$1	241	125	134	22.8139
AUUUUUUUU	chr11:62392282-62392514(-)$1	232	136	145	22.8139
ACUUUUUUU	chr11:61556513-61556762(-)$1	249	97	106	18.3953
AUUUUAUUU	chr4:83345737-83345984(-)$1	247	151	160	18.6279
AUAUUUUUU	chr1:33476057-33476315(-)$1	258	202	211	18.2790
CUUUAUUUU	chr8:23429748-23430016(+)$1	268	68	77	15.9534
AUUUUGUUU	chr1:203823039-203823285(+)$1	246	87	96	18.5116
AUUUGUUUU	chr8:101715421-101715638(-)$1	217	28	37	18.6279
AUUUUUGUU	chr14:102547807-102548024(-)$1	217	54	63	18.6279
AUUUGUUUU	chr8:101715441-101715685(-)$1	244	75	84	18.6279
AUUUUUGUU	chr20:34288620-34288850(+)$1	230	58	67	18.6279

#otherMatches

#Struct PSSM
ddd"""ccc	chr6:75949976-75950202(-)$1	226	76	85	20.0232
uhhhhhhhh	chr2:44115632-44115893(-)$1	261	245	254	18.6279
^^^^^^^^^	chr19:39220996-39221250(+)$1	254	100	109	22.8139
>>>>>>>>>	chr2:68405915-68406177(-)$1	262	234	243	22.8139
HHHH:::::	chr19:1434988-1435232(+)$1	244	206	215	20.0232
::::::::g	chr1:156280252-156280538(-)$1	286	248	257	18.7441
hhhhhh###	chr12:53692970-53693228(+)$1	258	68	77	18.2790
e666666dd	chr18:2803246-2803498(+)$1	252	86	95	18.6279
gggg%%%%%	chr12:104341549-104341790(+)$1	241	52	61	22.8139
nneeeeeFF	chr4:103717758-103718004(-)$1	246	224	233	18.7441
ffffff:::	chr1:879501-879747(-)$1	246	88	97	18.6279
iiiii]ccc	chr17:40463776-40464024(+)$1	248	169	178	18.2790
gggg%%%%%	chr12:104341396-104341664(+)$1	268	205	214	22.8139
=========	chr11:62360886-62361132(-)$1	246	193	202	20.0232
==]ccc:::	chr4:177253109-177253364(+)$1	255	95	104	20.0232
====ddddl	chr15:45010168-45010421(+)$1	253	137	146	18.6279
!!=======	chr7:100804269-100804544(+)$1	275	93	102	18.2790
ddd!!iiii	chr19:3052979-3053219(-)$1	240	86	95	18.0465
ddd"""ccc	chr6:75949916-75950174(-)$1	258	48	57	20.0232
ggggggmmm	chr9:96326730-96326982(+)$1	252	96	105	18.6279
c::::::::	chr5:179041637-179041883(-)$1	246	75	84	20.0232
hhhhh"""d	chr15:64657702-64658035(-)$1	333	139	148	18.3953
:::::::::	chr11:5269426-5269686(-)$1	260	203	212	20.0232
D::::::::	chr11:70281346-70281585(+)$1	239	12	21	19.0930
b22eeeee2	chr22:19507906-19508162(+)$1	256	187	196	18.6279
:::::::::	chrX:102930559-102930777(-)$1	218	92	101	20.0232
cc####bbp	chr7:5646097-5646361(+)$1	264	94	103	18.3953
:::::::::	chr17:4848940-4849218(-)$1	278	96	105	18.6279
9999999cc	chr8:11696105-11696374(+)$1	269	56	65	18.3953
fffff[ccc	chr19:46029979-46030259(+)$1	280	131	140	22.8139
GGGGGGYYB	chr7:23544596-23544866(-)$1	270	259	268	22.8139
eeee>>>>>	chr20:5095621-5095872(-)$1	251	82	91	18.2790
$$$$$ffff	chr14:23795198-23795439(+)$1	241	125	134	22.8139
=======22	chr11:62392282-62392514(-)$1	232	136	145	22.8139
rrrrrrree	chr11:61556513-61556762(-)$1	249	97	106	18.3953
eehhhhhhh	chr4:83345737-83345984(-)$1	247	151	160	18.6279
dmmmmdddd	chr1:33476057-33476315(-)$1	258	202	211	18.2790
fhhhhhhhh	chr8:23429748-23430016(+)$1	268	68	77	15.9534
mmmmeeeee	chr1:203823039-203823285(+)$1	246	87	96	18.5116
hhhhhhvvv	chr8:101715421-101715638(-)$1	217	28	37	18.6279
hhhhhhh22	chr14:102547807-102548024(-)$1	217	54	63	18.6279
hhhhhhvvv	chr8:101715441-101715685(-)$1	244	75	84	18.6279
]iiiiiiii	chr20:34288620-34288850(+)$1	230	58	67	18.6279

#DB
(((...(((	chr6:75949976-75950202(-)$1	1	76	85	20.0232
.))))))))	chr2:44115632-44115893(-)$1	1	245	254	18.6279
.........	chr19:39220996-39221250(+)$1	1	100	109	22.8139
.........	chr2:68405915-68406177(-)$1	1	234	243	22.8139
)))).....	chr19:1434988-1435232(+)$1	1	206	215	20.0232
........(	chr1:156280252-156280538(-)$1	1	248	257	18.7441
((((((...	chr12:53692970-53693228(+)$1	1	68	77	18.2790
)......))	chr18:2803246-2803498(+)$1	1	86	95	18.6279
((((.....	chr12:104341549-104341790(+)$1	1	52	61	22.8139
..)))))))	chr4:103717758-103718004(-)$1	1	224	233	18.7441
))))))...	chr1:879501-879747(-)$1	1	88	97	18.6279
))))).)))	chr17:40463776-40464024(+)$1	1	169	178	18.2790
((((.....	chr12:104341396-104341664(+)$1	1	205	214	22.8139
)))))))))	chr11:62360886-62361132(-)$1	1	193	202	20.0232
)).)))...	chr4:177253109-177253364(+)$1	1	95	104	20.0232
((((((((.	chr15:45010168-45010421(+)$1	1	137	146	18.6279
..(((((((	chr7:100804269-100804544(+)$1	1	93	102	18.2790
(((..((((	chr19:3052979-3053219(-)$1	1	86	95	18.0465
(((...(((	chr6:75949916-75950174(-)$1	1	48	57	20.0232
((((((...	chr9:96326730-96326982(+)$1	1	96	105	18.6279
)........	chr5:179041637-179041883(-)$1	1	75	84	20.0232
(((((...(	chr15:64657702-64658035(-)$1	1	139	148	18.3953
.........	chr11:5269426-5269686(-)$1	1	203	212	20.0232
(........	chr11:70281346-70281585(+)$1	1	12	21	19.0930
)..))))).	chr22:19507906-19508162(+)$1	1	187	196	18.6279
.........	chrX:102930559-102930777(-)$1	1	92	101	20.0232
((....((.	chr7:5646097-5646361(+)$1	1	94	103	18.3953
.........	chr17:4848940-4849218(-)$1	1	96	105	18.6279
.......))	chr8:11696105-11696374(+)$1	1	56	65	18.3953
(((((.(((	chr19:46029979-46030259(+)$1	1	131	140	22.8139
))))))..)	chr7:23544596-23544866(-)$1	1	259	268	22.8139
)))).....	chr20:5095621-5095872(-)$1	1	82	91	18.2790
.....((((	chr14:23795198-23795439(+)$1	1	125	134	22.8139
)))))))..	chr11:62392282-62392514(-)$1	1	136	145	22.8139
.......))	chr11:61556513-61556762(-)$1	1	97	106	18.3953
(((((((((	chr4:83345737-83345984(-)$1	1	151	160	18.6279
(....))))	chr1:33476057-33476315(-)$1	1	202	211	18.2790
)))))))))	chr8:23429748-23430016(+)$1	1	68	77	15.9534
....)))))	chr1:203823039-203823285(+)$1	1	87	96	18.5116
((((((...	chr8:101715421-101715638(-)$1	1	28	37	18.6279
)))))))..	chr14:102547807-102548024(-)$1	1	54	63	18.6279
((((((...	chr8:101715441-101715685(-)$1	1	75	84	18.6279
.))))))))	chr20:34288620-34288850(+)$1	1	58	67	18.6279

#PSSM
A : 0.72	C : 0.20	a : 0.04	g : 0.02	
U : 0.81	u : 0.11	C : 0.04	A : 0.02	
U : 0.83	u : 0.11	A : 0.04	
U : 0.88	u : 0.09	a : 0.02	
U : 0.79	u : 0.09	A : 0.04	G : 0.04	a : 0.02	
U : 0.76	u : 0.11	C : 0.04	A : 0.04	G : 0.02	
U : 0.79	u : 0.11	G : 0.06	A : 0.02	
U : 0.79	u : 0.11	A : 0.06	G : 0.02	
U : 0.83	u : 0.11	C : 0.04	

#score	840.3023255813955
#seq	43
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_CDS_m3_run2.nuc.txt

#NT
GGGAGAAG	chr6:31625744-31625959(+)$1	215	176	184	16.0000
GGGAAGAG	chr1:2334386-2334749(+)$1	363	123	131	15.3333
AGGAGGAG	chr12:56510886-56511095(+)$1	209	132	140	16.1111
GCGAGGAG	chr16:88709638-88709871(-)$1	233	25	33	15.1111
GGGUGGAG	chr9:101984731-101985008(+)$1	277	260	268	15.7777
GGGAGAAG	chr17:73142660-73142879(-)$1	219	99	107	16.0000
AGGAGGAG	chr11:62383101-62383357(-)$1	256	129	137	16.1111
AGGAGGAG	chr12:56510872-56511074(+)$1	202	146	154	16.1111
GGGAGGAG	chr17:40950535-40950784(-)$1	249	70	78	19.6666
GGAAGGAG	chr19:12757255-12757567(-)$1	312	114	122	15.8888
GGGAUGAG	chr16:69744883-69745140(-)$1	257	83	91	15.3333
GGCAGGAG	chr17:41150678-41150905(+)$1	227	16	24	16.1111
GGCAGGAG	chr17:79781187-79781481(-)$1	294	4	12	16.1111
GGGAGGAA	chr17:46971702-46971910(+)$1	208	113	121	14.8888
GGGAGGAG	chr9:19376391-19376598(-)$1	207	133	141	19.6666
GGCAGGAG	chr1:161192660-161192868(-)$1	208	23	31	16.1111
CGGAGGAG	chr19:54947404-54947712(+)$1	308	124	132	15.7777
GGGAGAAG	chr22:50941641-50941932(-)$1	291	0	8	16.0000
GGUAGGAG	chr20:18724731-18725010(+)$1	279	183	191	16.0000
GGUAGGAG	chr16:31202619-31202835(+)$1	216	12	20	16.0000
GGGAGGAG	chr19:7696259-7696525(+)$1	266	142	150	19.6666
GGGAAGAG	chr17:4862630-4862981(-)$1	351	127	135	15.3333
GGGAGGAG	chr2:219130255-219130488(-)$1	233	138	146	19.6666
CGGAGGAG	chr19:36616580-36616866(+)$1	286	72	80	15.7777
GGGAGAAG	chr4:99993413-99993671(-)$1	258	164	172	16.0000
GGCAGGAG	chr11:116706873-116707121(-)$1	248	113	121	16.1111
GGGUGGAG	chr4:2045509-2045734(+)$1	225	10	18	15.7777
GGGUGGAG	chr17:80059400-80059704(-)$1	304	248	256	15.7777
GGGAGAAG	chr16:88876040-88876303(-)$1	263	148	156	16.0000
GGGAGAAG	chrX:53458236-53458472(-)$1	236	122	130	16.0000
GGGAGGAG	chr19:5691444-5691665(+)$1	221	129	137	19.6666
GGGUGGAG	chr12:57627988-57628317(+)$1	329	103	111	15.7777
GGGUGGAG	chr1:160062146-160062379(-)$1	233	20	28	15.7777
GGAAGGAG	chr21:45175821-45176128(+)$1	307	20	28	15.8888
AGGAGGAG	chr1:6519967-6520238(+)$1	271	96	104	16.1111
GGGAGGGG	chr17:37008873-37009085(-)$1	212	6	14	15.3333
GUGAGGAG	chr6:31236801-31237051(-)$1	250	230	238	15.1111
GGGAGGAG	chr19:42460930-42461177(-)$1	247	151	159	19.6666
GGUAGGAG	chr12:56510480-56510684(+)$1	204	132	140	16.0000
AGGAGGAG	chr11:77790670-77790948(-)$1	278	55	63	16.1111
GGGAUGAG	chr19:36149438-36149682(+)$1	244	67	75	15.3333
GAGAGGAG	chr6:31654899-31655168(-)$1	269	214	222	15.1111
UGGAGGAG	chr5:177576700-177576940(-)$1	240	192	200	15.6666
GGGAGGGG	chr2:241075537-241075785(-)$1	248	231	239	15.3333

#otherMatches

#Struct PSSM
BB}JJJJJ	chr19:49464711-49464994(+)$1	283	236	244	15.3333
FFFFFFhh	chr6:31625744-31625959(+)$1	215	176	184	16.0000
ffff6666	chr1:2334386-2334749(+)$1	363	123	131	15.3333
ffffff]b	chr12:56510886-56511095(+)$1	209	132	140	16.1111
ddrrrrrr	chr16:88709638-88709871(-)$1	233	25	33	15.1111
FFF}DDDD	chr9:101984731-101985008(+)$1	277	260	268	15.7777
mmgggggg	chr17:73142660-73142879(-)$1	219	99	107	16.0000
ZZZCCCYY	chr11:62383101-62383357(-)$1	256	129	137	16.1111
ffffff]b	chr12:56510872-56511074(+)$1	202	146	154	16.1111
eeeee]ff	chr17:40950535-40950784(-)$1	249	70	78	19.6666
cc22ccce	chr19:12757255-12757567(-)$1	312	114	122	15.8888
ccrrrrrr	chr16:69744883-69745140(-)$1	257	83	91	15.3333
FFFFEEEE	chr17:41150678-41150905(+)$1	227	16	24	16.1111
EEEEEBBC	chr17:79781187-79781481(-)$1	294	4	12	16.1111
hhhhhooo	chr17:46971702-46971910(+)$1	208	113	121	14.8888
[cccmmmm	chr9:19376391-19376598(-)$1	207	133	141	19.6666
dddmmmmd	chr1:161192660-161192868(-)$1	208	23	31	16.1111
ffffff::	chr19:54947404-54947712(+)$1	308	124	132	15.7777
CCC:::::	chr22:50941641-50941932(-)$1	291	0	8	16.0000
h[ccc[cc	chr20:18724731-18725010(+)$1	279	183	191	16.0000
DD{A{GGG	chr16:31202619-31202835(+)$1	216	12	20	16.0000
bggggggg	chr19:7696259-7696525(+)$1	266	142	150	19.6666
EEE:::cc	chr17:4862630-4862981(-)$1	351	127	135	15.3333
hhhhhhh:	chr2:219130255-219130488(-)$1	233	138	146	19.6666
[bb[a!!a	chr19:36616580-36616866(+)$1	286	72	80	15.7777
!ddddooo	chr4:99993413-99993671(-)$1	258	164	172	16.0000
::::::dd	chr11:116706873-116707121(-)$1	248	113	121	16.1111
ddddFFFF	chr4:2045509-2045734(+)$1	225	10	18	15.7777
33hhhhhh	chr17:80059400-80059704(-)$1	304	248	256	15.7777
eeffffff	chr16:88876040-88876303(-)$1	263	148	156	16.0000
hhhhh!!g	chrX:53458236-53458472(-)$1	236	122	130	16.0000
ffffff[c	chr19:5691444-5691665(+)$1	221	129	137	19.6666
dddd%%%%	chr12:57627988-57628317(+)$1	329	103	111	15.7777
:cccoooo	chr1:160062146-160062379(-)$1	233	20	28	15.7777
dd!!bb[b	chr21:45175821-45176128(+)$1	307	20	28	15.8888
ddd]bb]c	chr1:6519967-6520238(+)$1	271	96	104	16.1111
FFFFFF::	chr17:37008873-37009085(-)$1	212	6	14	15.3333
cc]bb]cc	chr6:31236801-31237051(-)$1	250	230	238	15.1111
ffffff[c	chr19:42460930-42461177(-)$1	247	151	159	19.6666
====ccc[	chr12:56510480-56510684(+)$1	204	132	140	16.0000
:GGGGGGG	chr11:77790670-77790948(-)$1	278	55	63	16.1111
dddd$$$$	chr19:36149438-36149682(+)$1	244	67	75	15.3333
b]ccc::h	chr6:31654899-31655168(-)$1	269	214	222	15.1111
{DDDD:cc	chr5:177576700-177576940(-)$1	240	192	200	15.6666
BB}CCCCC	chr2:241075537-241075785(-)$1	248	231	239	15.3333

#DB
)).)))))	chr19:49464711-49464994(+)$1	1	236	244	15.3333
))))))((	chr6:31625744-31625959(+)$1	1	176	184	16.0000
))))....	chr1:2334386-2334749(+)$1	1	123	131	15.3333
)))))).)	chr12:56510886-56511095(+)$1	1	132	140	16.1111
((......	chr16:88709638-88709871(-)$1	1	25	33	15.1111
))).))))	chr9:101984731-101985008(+)$1	1	260	268	15.7777
..))))))	chr17:73142660-73142879(-)$1	1	99	107	16.0000
...)))..	chr11:62383101-62383357(-)$1	1	129	137	16.1111
)))))).)	chr12:56510872-56511074(+)$1	1	146	154	16.1111
))))).))	chr17:40950535-40950784(-)$1	1	70	78	19.6666
))..))))	chr19:12757255-12757567(-)$1	1	114	122	15.8888
((......	chr16:69744883-69745140(-)$1	1	83	91	15.3333
((((((((	chr17:41150678-41150905(+)$1	1	16	24	16.1111
((((((((	chr17:79781187-79781481(-)$1	1	4	12	16.1111
(((((...	chr17:46971702-46971910(+)$1	1	113	121	14.8888
.(((....	chr9:19376391-19376598(-)$1	1	133	141	19.6666
(((....)	chr1:161192660-161192868(-)$1	1	23	31	16.1111
))))))..	chr19:54947404-54947712(+)$1	1	124	132	15.7777
(((.....	chr22:50941641-50941932(-)$1	1	0	8	16.0000
(.(((.((	chr20:18724731-18725010(+)$1	1	183	191	16.0000
((.(.(((	chr16:31202619-31202835(+)$1	1	12	20	16.0000
((((((((	chr19:7696259-7696525(+)$1	1	142	150	19.6666
(((...((	chr17:4862630-4862981(-)$1	1	127	135	15.3333
))))))).	chr2:219130255-219130488(-)$1	1	138	146	19.6666
.((.(..(	chr19:36616580-36616866(+)$1	1	72	80	15.7777
.((((...	chr4:99993413-99993671(-)$1	1	164	172	16.0000
......((	chr11:116706873-116707121(-)$1	1	113	121	16.1111
))))((((	chr4:2045509-2045734(+)$1	1	10	18	15.7777
..))))))	chr17:80059400-80059704(-)$1	1	248	256	15.7777
((((((((	chr16:88876040-88876303(-)$1	1	148	156	16.0000
(((((..(	chrX:53458236-53458472(-)$1	1	122	130	16.0000
((((((.(	chr19:5691444-5691665(+)$1	1	129	137	19.6666
((((....	chr12:57627988-57628317(+)$1	1	103	111	15.7777
.(((....	chr1:160062146-160062379(-)$1	1	20	28	15.7777
((..((.(	chr21:45175821-45176128(+)$1	1	20	28	15.8888
))).)).)	chr1:6519967-6520238(+)$1	1	96	104	16.1111
((((((..	chr17:37008873-37009085(-)$1	1	6	14	15.3333
)).)).))	chr6:31236801-31237051(-)$1	1	230	238	15.1111
((((((.(	chr19:42460930-42461177(-)$1	1	151	159	19.6666
(((((((.	chr12:56510480-56510684(+)$1	1	132	140	16.0000
.(((((((	chr11:77790670-77790948(-)$1	1	55	63	16.1111
((((....	chr19:36149438-36149682(+)$1	1	67	75	15.3333
).)))..(	chr6:31654899-31655168(-)$1	1	214	222	15.1111
.((((.((	chr5:177576700-177576940(-)$1	1	192	200	15.6666
)).)))))	chr2:241075537-241075785(-)$1	1	231	239	15.3333

#PSSM
G : 0.82	A : 0.11	C : 0.04	U : 0.02	
G : 0.93	C : 0.02	U : 0.02	A : 0.02	
G : 0.80	C : 0.08	U : 0.06	A : 0.04	
A : 0.88	U : 0.11	
G : 0.91	A : 0.04	U : 0.04	
G : 0.86	A : 0.13	
A : 0.93	G : 0.06	
G : 0.97	A : 0.02	

#score	732.4444444444447
#seq	45
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_CDS_m2_run2.nuc.txt

#NT
AAAAGAA	chr12:76449740-76449948(-)$1	208	57	64	18.2727
GAAAGAA	chr4:104081681-104081928(-)$1	247	38	45	14.5227
AAAAGAA	chr12:76449711-76449917(-)$1	206	26	33	18.2727
aaaagaa	chr14:102549270-102549477(-)$1	207	24	31	18.2727
ACAAGAA	chr4:436009-436317(-)$1	308	121	128	14.5227
AAAAGAA	chr12:76448699-76448970(-)$1	271	174	181	18.2727
CAAAGAA	chr17:38556415-38556673(-)$1	258	17	24	14.5227
CAAAGAA	chr3:14239433-14239695(+)$1	262	185	192	14.5227
AAAAGAA	chr1:16257305-16257553(+)$1	248	220	227	18.2727
AAAAGAA	chr1:214817915-214818139(+)$1	224	19	26	18.2727
AAAUGAA	chr8:94748104-94748359(-)$1	255	218	225	14.2954
AAAAGAA	chr10:129913693-129914010(-)$1	317	97	104	18.2727
AGAAGAA	chr5:138700234-138700485(+)$1	251	38	45	14.4090
AAAAGAA	chr5:149827123-149827370(-)$1	247	96	103	18.2727
AAAUGAA	chr7:6731542-6731794(-)$1	252	15	22	14.2954
AAAAGAG	chr12:95888712-95889004(+)$1	292	53	60	13.9545
AAAAGAA	chr12:104333186-104333467(+)$1	281	165	172	18.2727
AAAAGAA	chr18:9255445-9255700(+)$1	255	129	136	18.2727
AGAAGAA	chr6:26123922-26124219(-)$1	297	154	161	14.4090
UAAAGAA	chrX:71495293-71495509(-)$1	216	35	42	14.4090
AAAAGAA	chr13:45911523-45911779(-)$1	256	96	103	18.2727
AAAAGAC	chr12:21788376-21788670(-)$1	294	182	189	13.9545
AAAUGAA	chr11:62297321-62297602(-)$1	281	104	111	14.2954
AAAUGAA	chr11:62297246-62297521(-)$1	275	23	30	14.2954
AAAAGAC	chr9:37126768-37127058(+)$1	290	238	245	13.9545
AAAGGAA	chr10:71148873-71149149(+)$1	276	75	82	13.9545
UAAAGAA	chr16:2814229-2814474(+)$1	245	79	86	14.4090
AGAAGAA	chr9:127623675-127623925(-)$1	250	122	129	14.4090
AAAAGAA	chr12:76449748-76449964(-)$1	216	73	80	18.2727
AAAAGAA	chr3:37366590-37366863(+)$1	273	44	51	18.2727
GAAAGAA	chr17:38555238-38555461(-)$1	223	91	98	14.5227
AAAAGAA	chr12:104333267-104333486(+)$1	219	84	91	18.2727
AAAAGAA	chr11:65826885-65827139(+)$1	254	101	108	18.2727
GAAAGAA	chr16:2814653-2814894(+)$1	241	124	131	14.5227
AAAAGAA	chrX:48652234-48652499(+)$1	265	35	42	18.2727
ACAAGAA	chr17:38556770-38556987(-)$1	217	82	89	14.5227
AAAAGAA	chr2:187368764-187369056(+)$1	292	121	128	18.2727
ACAAGAA	chr3:47727478-47727762(-)$1	284	266	273	14.5227
AAAAGAA	chr10:70546202-70546434(+)$1	232	102	109	18.2727
CAAAGAA	chrX:70793452-70793759(+)$1	307	48	55	14.5227
AAAAGAA	chr3:37367401-37367694(+)$1	293	148	155	18.2727
AAAAGAA	chr6:27809333-27809577(+)$1	244	15	22	18.2727
AAAAGAG	chr12:104335153-104335396(+)$1	243	152	159	13.9545

#otherMatches

#Struct PSSM
:::::::	chr14:56083134-56083445(+)$1	311	179	186	14.5227
^^^^^^^	chr12:76449740-76449948(-)$1	208	57	64	18.2727
GOOOOOO	chr4:104081681-104081928(-)$1	247	38	45	14.5227
::::ccc	chr12:76449711-76449917(-)$1	206	26	33	18.2727
^^^^^^^	chr14:102549270-102549477(-)$1	207	24	31	18.2727
DDD::::	chr4:436009-436317(-)$1	308	121	128	14.5227
fffff!!	chr12:76448699-76448970(-)$1	271	174	181	18.2727
:::dddd	chr17:38556415-38556673(-)$1	258	17	24	14.5227
fffff##	chr3:14239433-14239695(+)$1	262	185	192	14.5227
:::::::	chr1:16257305-16257553(+)$1	248	220	227	18.2727
!!cccoo	chr1:214817915-214818139(+)$1	224	19	26	18.2727
::::ggg	chr8:94748104-94748359(-)$1	255	218	225	14.2954
zzzzzzz	chr10:129913693-129914010(-)$1	317	97	104	18.2727
B{CCCLL	chr5:138700234-138700485(+)$1	251	38	45	14.4090
======c	chr5:149827123-149827370(-)$1	247	96	103	18.2727
qqqqqqq	chr7:6731542-6731794(-)$1	252	15	22	14.2954
=======	chr12:95888712-95889004(+)$1	292	53	60	13.9545
:::::::	chr12:104333186-104333467(+)$1	281	165	172	18.2727
iiiiii:	chr18:9255445-9255700(+)$1	255	129	136	18.2727
EEEEEEE	chr6:26123922-26124219(-)$1	297	154	161	14.4090
LLLFFFF	chrX:71495293-71495509(-)$1	216	35	42	14.4090
geeeee%	chr13:45911523-45911779(-)$1	256	96	103	18.2727
:::::::	chr12:21788376-21788670(-)$1	294	182	189	13.9545
qqqqqqq	chr11:62297321-62297602(-)$1	281	104	111	14.2954
DDDD:::	chr11:62297246-62297521(-)$1	275	23	30	14.2954
b!!eeee	chr9:37126768-37127058(+)$1	290	238	245	13.9545
d!!dddd	chr10:71148873-71149149(+)$1	276	75	82	13.9545
d666666	chr16:2814229-2814474(+)$1	245	79	86	14.4090
peeeee5	chr9:127623675-127623925(-)$1	250	122	129	14.4090
^^^^^^^	chr12:76449748-76449964(-)$1	216	73	80	18.2727
::::::F	chr3:37366590-37366863(+)$1	273	44	51	18.2727
cc:ffff	chr17:38555238-38555461(-)$1	223	91	98	14.5227
:::::::	chr12:104333267-104333486(+)$1	219	84	91	18.2727
cc]dddd	chr11:65826885-65827139(+)$1	254	101	108	18.2727
qqqqbb]	chr16:2814653-2814894(+)$1	241	124	131	14.5227
:::::::	chrX:48652234-48652499(+)$1	265	35	42	18.2727
iiii]ad	chr17:38556770-38556987(-)$1	217	82	89	14.5227
ee:::::	chr2:187368764-187369056(+)$1	292	121	128	18.2727
:ddddpp	chr3:47727478-47727762(-)$1	284	266	273	14.5227
ooggggg	chr10:70546202-70546434(+)$1	232	102	109	18.2727
PPPPPPP	chrX:70793452-70793759(+)$1	307	48	55	14.5227
""bb"""	chr3:37367401-37367694(+)$1	293	148	155	18.2727
::::::G	chr6:27809333-27809577(+)$1	244	15	22	18.2727
6666ddd	chr12:104335153-104335396(+)$1	243	152	159	13.9545

#DB
.......	chr14:56083134-56083445(+)$1	1	179	186	14.5227
.......	chr12:76449740-76449948(-)$1	1	57	64	18.2727
(......	chr4:104081681-104081928(-)$1	1	38	45	14.5227
....(((	chr12:76449711-76449917(-)$1	1	26	33	18.2727
.......	chr14:102549270-102549477(-)$1	1	24	31	18.2727
(((....	chr4:436009-436317(-)$1	1	121	128	14.5227
(((((..	chr12:76448699-76448970(-)$1	1	174	181	18.2727
...((((	chr17:38556415-38556673(-)$1	1	17	24	14.5227
(((((..	chr3:14239433-14239695(+)$1	1	185	192	14.5227
.......	chr1:16257305-16257553(+)$1	1	220	227	18.2727
..(((..	chr1:214817915-214818139(+)$1	1	19	26	18.2727
....(((	chr8:94748104-94748359(-)$1	1	218	225	14.2954
.......	chr10:129913693-129914010(-)$1	1	97	104	18.2727
(.(((..	chr5:138700234-138700485(+)$1	1	38	45	14.4090
)))))))	chr5:149827123-149827370(-)$1	1	96	103	18.2727
.......	chr7:6731542-6731794(-)$1	1	15	22	14.2954
)))))))	chr12:95888712-95889004(+)$1	1	53	60	13.9545
.......	chr12:104333186-104333467(+)$1	1	165	172	18.2727
)))))).	chr18:9255445-9255700(+)$1	1	129	136	18.2727
)))))))	chr6:26123922-26124219(-)$1	1	154	161	14.4090
...((((	chrX:71495293-71495509(-)$1	1	35	42	14.4090
)(((((.	chr13:45911523-45911779(-)$1	1	96	103	18.2727
.......	chr12:21788376-21788670(-)$1	1	182	189	13.9545
.......	chr11:62297321-62297602(-)$1	1	104	111	14.2954
((((...	chr11:62297246-62297521(-)$1	1	23	30	14.2954
(..((((	chr9:37126768-37127058(+)$1	1	238	245	13.9545
(..((((	chr10:71148873-71149149(+)$1	1	75	82	13.9545
)......	chr16:2814229-2814474(+)$1	1	79	86	14.4090
.))))).	chr9:127623675-127623925(-)$1	1	122	129	14.4090
.......	chr12:76449748-76449964(-)$1	1	73	80	18.2727
......(	chr3:37366590-37366863(+)$1	1	44	51	18.2727
)).((((	chr17:38555238-38555461(-)$1	1	91	98	14.5227
.......	chr12:104333267-104333486(+)$1	1	84	91	18.2727
)).))))	chr11:65826885-65827139(+)$1	1	101	108	18.2727
....)).	chr16:2814653-2814894(+)$1	1	124	131	14.5227
.......	chrX:48652234-48652499(+)$1	1	35	42	18.2727
)))).)(	chr17:38556770-38556987(-)$1	1	82	89	14.5227
)).....	chr2:187368764-187369056(+)$1	1	121	128	18.2727
.((((..	chr3:47727478-47727762(-)$1	1	266	273	14.5227
..)))))	chr10:70546202-70546434(+)$1	1	102	109	18.2727
.......	chrX:70793452-70793759(+)$1	1	48	55	14.5227
..((...	chr3:37367401-37367694(+)$1	1	148	155	18.2727
......(	chr6:27809333-27809577(+)$1	1	15	22	18.2727
....)))	chr12:104335153-104335396(+)$1	1	152	159	13.9545

#PSSM
A : 0.79	G : 0.06	C : 0.06	U : 0.04	a : 0.02	
A : 0.81	C : 0.09	G : 0.06	a : 0.02	
A : 0.97	a : 0.02	
A : 0.86	U : 0.09	a : 0.02	G : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	
A : 0.88	G : 0.04	C : 0.04	a : 0.02	

#score	709.6818181818176
#seq	44
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_transcript_m3_run1.nuc.txt

#NT
CCCA	chrX:53225850-53226105(-)$1	255	9	13	12.0000
ccca	chr22:38890895-38891150(-)$1	255	26	30	12.0000
CCCA	chr3:184043167-184043371(+)$1	204	12	16	12.0000
ccca	chr19:2151151-2151467(-)$1	316	90	94	12.0000
CCCA	chr1:156104961-156105199(+)$1	238	68	72	12.0000
CCCA	chr1:19512933-19513157(-)$1	224	147	151	12.0000
CCCA	chr5:154173259-154173516(+)$1	257	34	38	12.0000
CCCA	chr11:3818631-3818881(-)$1	250	11	15	12.0000
CCCA	chr17:57758956-57759209(+)$1	253	142	146	12.0000
CCCA	chr19:5079094-5079386(+)$1	292	217	221	12.0000
CCCA	chrX:53432324-53432591(-)$1	267	182	186	12.0000
CCCA	chr1:23407904-23408166(+)$1	262	29	33	12.0000
ccca	chr7:2269948-2270247(-)$1	299	77	81	12.0000
CCCA	chr19:18960827-18961078(+)$1	251	234	238	12.0000
CCCA	chr7:2394892-2395152(+)$1	260	25	29	12.0000
CCCA	chr22:21800359-21800600(+)$1	241	92	96	12.0000
CCCA	chr9:131755375-131755642(+)$1	267	42	46	12.0000
CCCA	chr5:154134960-154135228(+)$1	268	252	256	12.0000
CCCA	chr8:48694697-48694912(-)$1	215	162	166	12.0000
CCCA	chr3:184043171-184043410(+)$1	239	8	12	12.0000
CCCA	chr3:184040778-184041002(+)$1	224	122	126	12.0000
cccA	chr4:17812662-17812912(+)$1	250	192	196	12.0000
CCCA	chr7:98985560-98985784(+)$1	224	28	32	12.0000
CCCA	chr1:226552604-226552859(-)$1	255	119	123	12.0000
CCCA	chr8:144944429-144944673(-)$1	244	120	124	12.0000
CCCA	chr17:7405207-7405456(+)$1	249	6	10	12.0000
CCCA	chr3:25705838-25706121(-)$1	283	264	268	12.0000
CCCA	chr12:120587734-120587947(-)$1	213	53	57	12.0000
ccca	chr10:11536314-11536605(-)$1	291	68	72	12.0000
CCCA	chr1:19476977-19477245(-)$1	268	52	56	12.0000
CCCA	chr17:7414683-7414960(+)$1	277	34	38	12.0000
CCCA	chr15:22954112-22954452(+)$1	340	200	204	12.0000
CCCA	chr1:220267669-220267924(+)$1	255	102	106	12.0000
CCCA	chr8:48802929-48803140(-)$1	211	108	112	12.0000
CCCA	chr17:46128606-46128872(+)$1	266	9	13	12.0000
CCCA	chr14:102474414-102474622(+)$1	208	197	201	12.0000
CCCA	chr1:52344020-52344252(-)$1	232	163	167	12.0000
CCCA	chr8:17780280-17780579(+)$1	299	210	214	12.0000
ccca	chr6:167364249-167364528(-)$1	279	58	62	12.0000
CCCA	chr8:48830800-48831002(-)$1	202	104	108	12.0000
CCCA	chr1:19518640-19518869(-)$1	229	104	108	12.0000
CCCA	chr10:71151794-71152014(+)$1	220	11	15	12.0000
CCCA	chr17:74733226-74733508(-)$1	282	92	96	12.0000
CCCA	chr7:99691817-99692051(-)$1	234	45	49	12.0000
CCCA	chr19:39208535-39208776(+)$1	241	26	30	12.0000
CCCA	chr17:1564826-1565091(-)$1	265	80	84	12.0000
CCCA	chr10:75855399-75855690(+)$1	291	128	132	12.0000
CCCA	chr22:41903762-41904036(+)$1	274	25	29	12.0000
CCCA	chr16:85689971-85690245(+)$1	274	203	207	12.0000
CCCA	chr21:33706454-33706732(-)$1	278	104	108	12.0000
CCCA	chr1:36689935-36690205(+)$1	270	38	42	12.0000
CCCA	chr8:145001671-145001925(-)$1	254	1	5	12.0000
CCCA	chr16:70302074-70302287(-)$1	213	46	50	12.0000
CCCA	chr4:60076-60336(+)$1	260	128	132	12.0000
CCCA	chr11:62299916-62300173(-)$1	257	58	62	12.0000
CCCA	chr19:50906260-50906557(+)$1	297	162	166	12.0000
CCCA	chrX:153592923-153593139(-)$1	216	4	8	12.0000
CCCA	chr19:8550736-8550991(+)$1	255	73	77	12.0000
CCCA	chr17:80042588-80042824(-)$1	236	27	31	12.0000
CCCA	chr6:30680437-30680686(-)$1	249	67	71	12.0000
CCCA	chr11:64846928-64847173(-)$1	245	4	8	12.0000
CCCA	chr17:1580820-1581089(-)$1	269	24	28	12.0000
CCCA	chr3:47887658-47887904(+)$1	246	22	26	12.0000
CCCA	chr3:184049461-184049685(+)$1	224	13	17	12.0000
CCCA	chr16:67909797-67910048(+)$1	251	45	49	12.0000
CCCA	chr20:39741338-39741610(+)$1	272	46	50	12.0000
CCCA	chr1:19438931-19439161(-)$1	230	21	25	12.0000
CCCA	chr9:35704622-35704876(-)$1	254	71	75	12.0000
CCCA	chr22:29196228-29196561(-)$1	333	173	177	12.0000
CCCA	chr17:80040314-80040552(-)$1	238	162	166	12.0000
CCCA	chr17:27017867-27018163(+)$1	296	47	51	12.0000
CCCA	chr1:226573202-226573480(-)$1	278	29	33	12.0000
CCCA	chr8:48690943-48691188(-)$1	245	20	24	12.0000
CCCA	chr2:44222959-44223230(-)$1	271	30	34	12.0000
CCCA	chr17:1556788-1557018(-)$1	230	132	136	12.0000
CCCA	chr19:46332242-46332534(-)$1	292	32	36	12.0000
CCCA	chr5:154135150-154135415(+)$1	265	62	66	12.0000
CCCA	chrX:153583102-153583328(-)$1	226	62	66	12.0000
CCCA	chr17:80045468-80045690(-)$1	222	9	13	12.0000
CCCA	chr21:45741920-45742184(+)$1	264	0	4	12.0000

#otherMatches

#Struct PSSM
qqqd	chr14:102508647-102508876(+)$1	229	15	19	12.0000
abb[	chrX:53225850-53226105(-)$1	255	9	13	12.0000
LLCC	chr22:38890895-38891150(-)$1	255	26	30	12.0000
::::	chr3:184043167-184043371(+)$1	204	12	16	12.0000
ddd:	chr19:2151151-2151467(-)$1	316	90	94	12.0000
eeee	chr1:156104961-156105199(+)$1	238	68	72	12.0000
dd>>	chr1:19512933-19513157(-)$1	224	147	151	12.0000
dd:d	chr5:154173259-154173516(+)$1	257	34	38	12.0000
ccc:	chr11:3818631-3818881(-)$1	250	11	15	12.0000
bddd	chr17:57758956-57759209(+)$1	253	142	146	12.0000
:fff	chr19:5079094-5079386(+)$1	292	217	221	12.0000
cc33	chrX:53432324-53432591(-)$1	267	182	186	12.0000
EEEE	chr1:23407904-23408166(+)$1	262	29	33	12.0000
ddee	chr7:2269948-2270247(-)$1	299	77	81	12.0000
eeee	chr19:18960827-18961078(+)$1	251	234	238	12.0000
ebbm	chr7:2394892-2395152(+)$1	260	25	29	12.0000
ddd[	chr22:21800359-21800600(+)$1	241	92	96	12.0000
D{FF	chr9:131755375-131755642(+)$1	267	42	46	12.0000
CCCY	chr5:154134960-154135228(+)$1	268	252	256	12.0000
22ii	chr8:48694697-48694912(-)$1	215	162	166	12.0000
DDDF	chr3:184043171-184043410(+)$1	239	8	12	12.0000
((((	chr3:184040778-184041002(+)$1	224	122	126	12.0000
eeeu	chr4:17812662-17812912(+)$1	250	192	196	12.0000
CCEE	chr7:98985560-98985784(+)$1	224	28	32	12.0000
bbcc	chr1:226552604-226552859(-)$1	255	119	123	12.0000
ee[d	chr8:144944429-144944673(-)$1	244	120	124	12.0000
ccc!	chr17:7405207-7405456(+)$1	249	6	10	12.0000
ccc[	chr3:25705838-25706121(-)$1	283	264	268	12.0000
bbcc	chr12:120587734-120587947(-)$1	213	53	57	12.0000
::EE	chr10:11536314-11536605(-)$1	291	68	72	12.0000
::ff	chr1:19476977-19477245(-)$1	268	52	56	12.0000
$$$$	chr17:7414683-7414960(+)$1	277	34	38	12.0000
44bb	chr15:22954112-22954452(+)$1	340	200	204	12.0000
nnnn	chr1:220267669-220267924(+)$1	255	102	106	12.0000
nndd	chr8:48802929-48803140(-)$1	211	108	112	12.0000
FF{D	chr17:46128606-46128872(+)$1	266	9	13	12.0000
]bb2	chr14:102474414-102474622(+)$1	208	197	201	12.0000
bbmm	chr1:52344020-52344252(-)$1	232	163	167	12.0000
dsss	chr8:17780280-17780579(+)$1	299	210	214	12.0000
EEcc	chr6:167364249-167364528(-)$1	279	58	62	12.0000
eeee	chr8:48830800-48831002(-)$1	202	104	108	12.0000
eeee	chr1:19518640-19518869(-)$1	229	104	108	12.0000
GGGG	chr10:71151794-71152014(+)$1	220	11	15	12.0000
dd[c	chr17:74733226-74733508(-)$1	282	92	96	12.0000
::GG	chr7:99691817-99692051(-)$1	234	45	49	12.0000
eccc	chr19:39208535-39208776(+)$1	241	26	30	12.0000
ii]c	chr17:1564826-1565091(-)$1	265	80	84	12.0000
oogg	chr10:75855399-75855690(+)$1	291	128	132	12.0000
OOOO	chr22:41903762-41904036(+)$1	274	25	29	12.0000
cbb2	chr16:85689971-85690245(+)$1	274	203	207	12.0000
hhh5	chr21:33706454-33706732(-)$1	278	104	108	12.0000
eee$	chr1:36689935-36690205(+)$1	270	38	42	12.0000
FFFF	chr8:145001671-145001925(-)$1	254	1	5	12.0000
ddd[	chr16:70302074-70302287(-)$1	213	46	50	12.0000
ccc:	chr4:60076-60336(+)$1	260	128	132	12.0000
hhcc	chr11:62299916-62300173(-)$1	257	58	62	12.0000
a22b	chr19:50906260-50906557(+)$1	297	162	166	12.0000
EE::	chrX:153592923-153593139(-)$1	216	4	8	12.0000
hhhh	chr19:8550736-8550991(+)$1	255	73	77	12.0000
::::	chr17:80042588-80042824(-)$1	236	27	31	12.0000
f[a[	chr6:30680437-30680686(-)$1	249	67	71	12.0000
::::	chr11:64846928-64847173(-)$1	245	4	8	12.0000
CAEE	chr17:1580820-1581089(-)$1	269	24	28	12.0000
occc	chr3:47887658-47887904(+)$1	246	22	26	12.0000
FFF:	chr3:184049461-184049685(+)$1	224	13	17	12.0000
d!!c	chr16:67909797-67910048(+)$1	251	45	49	12.0000
ffff	chr20:39741338-39741610(+)$1	272	46	50	12.0000
++++	chr1:19438931-19439161(-)$1	230	21	25	12.0000
lbb]	chr9:35704622-35704876(-)$1	254	71	75	12.0000
dddo	chr22:29196228-29196561(-)$1	333	173	177	12.0000
eeem	chr17:80040314-80040552(-)$1	238	162	166	12.0000
CCCC	chr17:27017867-27018163(+)$1	296	47	51	12.0000
22cc	chr1:226573202-226573480(-)$1	278	29	33	12.0000
::cc	chr8:48690943-48691188(-)$1	245	20	24	12.0000
))))	chr2:44222959-44223230(-)$1	271	30	34	12.0000
::::	chr17:1556788-1557018(-)$1	230	132	136	12.0000
DDDM	chr19:46332242-46332534(-)$1	292	32	36	12.0000
DDDg	chr5:154135150-154135415(+)$1	265	62	66	12.0000
GGG:	chrX:153583102-153583328(-)$1	226	62	66	12.0000
obb:	chr17:80045468-80045690(-)$1	222	9	13	12.0000
::::	chr21:45741920-45742184(+)$1	264	0	4	12.0000

#DB
...)	chr14:102508647-102508876(+)$1	1	15	19	12.0000
(((.	chrX:53225850-53226105(-)$1	1	9	13	12.0000
..((	chr22:38890895-38891150(-)$1	1	26	30	12.0000
....	chr3:184043167-184043371(+)$1	1	12	16	12.0000
))).	chr19:2151151-2151467(-)$1	1	90	94	12.0000
))))	chr1:156104961-156105199(+)$1	1	68	72	12.0000
))..	chr1:19512933-19513157(-)$1	1	147	151	12.0000
)).(	chr5:154173259-154173516(+)$1	1	34	38	12.0000
))).	chr11:3818631-3818881(-)$1	1	11	15	12.0000
))))	chr17:57758956-57759209(+)$1	1	142	146	12.0000
.(((	chr19:5079094-5079386(+)$1	1	217	221	12.0000
))..	chrX:53432324-53432591(-)$1	1	182	186	12.0000
((((	chr1:23407904-23408166(+)$1	1	29	33	12.0000
))))	chr7:2269948-2270247(-)$1	1	77	81	12.0000
((((	chr19:18960827-18961078(+)$1	1	234	238	12.0000
(((.	chr7:2394892-2395152(+)$1	1	25	29	12.0000
(((.	chr22:21800359-21800600(+)$1	1	92	96	12.0000
(.((	chr9:131755375-131755642(+)$1	1	42	46	12.0000
))).	chr5:154134960-154135228(+)$1	1	252	256	12.0000
..))	chr8:48694697-48694912(-)$1	1	162	166	12.0000
((((	chr3:184043171-184043410(+)$1	1	8	12	12.0000
....	chr3:184040778-184041002(+)$1	1	122	126	12.0000
(((.	chr4:17812662-17812912(+)$1	1	192	196	12.0000
((((	chr7:98985560-98985784(+)$1	1	28	32	12.0000
))))	chr1:226552604-226552859(-)$1	1	119	123	12.0000
((.(	chr8:144944429-144944673(-)$1	1	120	124	12.0000
(((.	chr17:7405207-7405456(+)$1	1	6	10	12.0000
(((.	chr3:25705838-25706121(-)$1	1	264	268	12.0000
))))	chr12:120587734-120587947(-)$1	1	53	57	12.0000
..((	chr10:11536314-11536605(-)$1	1	68	72	12.0000
..((	chr1:19476977-19477245(-)$1	1	52	56	12.0000
....	chr17:7414683-7414960(+)$1	1	34	38	12.0000
..))	chr15:22954112-22954452(+)$1	1	200	204	12.0000
....	chr1:220267669-220267924(+)$1	1	102	106	12.0000
..))	chr8:48802929-48803140(-)$1	1	108	112	12.0000
((.(	chr17:46128606-46128872(+)$1	1	9	13	12.0000
.)).	chr14:102474414-102474622(+)$1	1	197	201	12.0000
((..	chr1:52344020-52344252(-)$1	1	163	167	12.0000
(...	chr8:17780280-17780579(+)$1	1	210	214	12.0000
((((	chr6:167364249-167364528(-)$1	1	58	62	12.0000
))))	chr8:48830800-48831002(-)$1	1	104	108	12.0000
))))	chr1:19518640-19518869(-)$1	1	104	108	12.0000
((((	chr10:71151794-71152014(+)$1	1	11	15	12.0000
((.(	chr17:74733226-74733508(-)$1	1	92	96	12.0000
..((	chr7:99691817-99692051(-)$1	1	45	49	12.0000
((((	chr19:39208535-39208776(+)$1	1	26	30	12.0000
)).)	chr17:1564826-1565091(-)$1	1	80	84	12.0000
..))	chr10:75855399-75855690(+)$1	1	128	132	12.0000
....	chr22:41903762-41904036(+)$1	1	25	29	12.0000
))).	chr16:85689971-85690245(+)$1	1	203	207	12.0000
))).	chr21:33706454-33706732(-)$1	1	104	108	12.0000
(((.	chr1:36689935-36690205(+)$1	1	38	42	12.0000
((((	chr8:145001671-145001925(-)$1	1	1	5	12.0000
(((.	chr16:70302074-70302287(-)$1	1	46	50	12.0000
))).	chr4:60076-60336(+)$1	1	128	132	12.0000
))((	chr11:62299916-62300173(-)$1	1	58	62	12.0000
)..)	chr19:50906260-50906557(+)$1	1	162	166	12.0000
((..	chrX:153592923-153593139(-)$1	1	4	8	12.0000
((((	chr19:8550736-8550991(+)$1	1	73	77	12.0000
....	chr17:80042588-80042824(-)$1	1	27	31	12.0000
(.(.	chr6:30680437-30680686(-)$1	1	67	71	12.0000
....	chr11:64846928-64847173(-)$1	1	4	8	12.0000
((((	chr17:1580820-1581089(-)$1	1	24	28	12.0000
.)))	chr3:47887658-47887904(+)$1	1	22	26	12.0000
(((.	chr3:184049461-184049685(+)$1	1	13	17	12.0000
(..(	chr16:67909797-67910048(+)$1	1	45	49	12.0000
((((	chr20:39741338-39741610(+)$1	1	46	50	12.0000
....	chr1:19438931-19439161(-)$1	1	21	25	12.0000
.)).	chr9:35704622-35704876(-)$1	1	71	75	12.0000
(((.	chr22:29196228-29196561(-)$1	1	173	177	12.0000
(((.	chr17:80040314-80040552(-)$1	1	162	166	12.0000
((((	chr17:27017867-27018163(+)$1	1	47	51	12.0000
..))	chr1:226573202-226573480(-)$1	1	29	33	12.0000
..((	chr8:48690943-48691188(-)$1	1	20	24	12.0000
....	chr2:44222959-44223230(-)$1	1	30	34	12.0000
....	chr17:1556788-1557018(-)$1	1	132	136	12.0000
(((.	chr19:46332242-46332534(-)$1	1	32	36	12.0000
((((	chr5:154135150-154135415(+)$1	1	62	66	12.0000
(((.	chrX:153583102-153583328(-)$1	1	62	66	12.0000
.)).	chr17:80045468-80045690(-)$1	1	9	13	12.0000
....	chr21:45741920-45742184(+)$1	1	0	4	12.0000

#PSSM
C : 0.92	c : 0.07	
C : 0.92	c : 0.07	
C : 0.92	c : 0.07	
A : 0.93	a : 0.06	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_transcript_m3_run1.nuc.txt

#NT
UGGGUGGGG	chr20:62271929-62272211(-)$1	282	47	56	18.2244
GGGGUGGGG	chr1:28176883-28177200(+)$1	317	224	233	22.4081
GGGGAGGGG	chr19:2101469-2101775(-)$1	306	43	52	20.2653
GAGGUGGGG	chr2:30480629-30480876(+)$1	247	217	226	18.0204
GGGGUAGGG	chr17:38077891-38078131(-)$1	240	94	103	17.6122
GGGGCGGGG	chr22:20111647-20111916(+)$1	269	256	265	19.1428
GGGGUGGGA	chr19:47724184-47724438(-)$1	254	99	108	18.0204
GGGGUGGGG	chr19:42752029-42752413(-)$1	384	360	369	22.4081
gggcugggg	chr19:49964743-49965003(+)$1	260	48	57	18.3265
CGGGUGGGG	chr19:6229324-6229603(-)$1	279	94	103	18.3265
GGGCUGGGG	chr16:4307682-4308023(-)$1	341	152	161	18.3265
ggggcgggg	chr19:42788122-42788379(+)$1	257	43	52	19.1428
GGGGAGGGG	chr11:991676-991943(+)$1	267	98	107	20.2653
GGGGUGGGG	chr16:69151851-69152172(-)$1	321	138	147	22.4081
GGGGUGCGG	chr22:20110906-20111130(+)$1	224	88	97	18.1224
GGAGUGGGG	chr19:1853650-1853883(-)$1	233	43	52	18.2244
GGGGAGGGG	chr1:27731642-27731918(-)$1	276	129	138	20.2653
GGGGUGCGG	chr22:20110960-20111198(+)$1	238	34	43	18.1224
AGGGAGGGG	chr1:153780361-153780620(-)$1	259	24	33	16.3877
ggggugggg	chr2:183902896-183903194(-)$1	298	107	116	22.4081
GGAGUGGGG	chr11:44641718-44641978(+)$1	260	77	86	18.2244
cgggagggg	chr5:81045681-81045934(-)$1	253	62	71	16.1836
GAGGUGGGG	chr22:20112428-20112654(+)$1	226	80	89	18.0204
GGGGUGGGG	chr3:48199321-48199595(-)$1	274	96	105	22.4081
GGUGUGGGG	chr17:79282706-79282953(-)$1	247	50	59	18.3265
GGGGAGGGG	chr2:97534556-97534801(-)$1	245	40	49	20.2653
GGGGUGGGA	chr1:160184357-160184615(+)$1	258	125	134	18.0204
AGGGAGGGG	chr19:4046993-4047237(-)$1	244	50	59	16.3877
GGGGAGAGG	chr4:71849797-71850042(+)$1	245	219	228	15.7755
GGCGUGGGG	chr19:4121141-4121467(-)$1	326	106	115	18.1224
GGGGUGGGG	chr17:79390741-79391033(+)$1	292	95	104	22.4081
AGGGUGGGG	chr6:34256144-34256442(-)$1	298	106	115	18.5306
GAGGUGGGG	chr21:45403286-45403534(+)$1	248	23	32	18.0204
GGGGUGGGG	chr17:56408173-56408403(-)$1	230	183	192	22.4081
GGGGUGCGG	chr16:88960014-88960280(-)$1	266	12	21	18.1224
GGGGUGGGA	chr19:49406314-49406562(+)$1	248	207	216	18.0204
ggggagggg	chr19:14500093-14500385(+)$1	292	9	18	20.2653
GGGGUGGGG	chr11:68834775-68835052(+)$1	277	148	157	22.4081
GGGUUGGGG	chr1:161332529-161332761(+)$1	232	72	81	18.1224
GGGGAGGGG	chr9:134371928-134372181(+)$1	253	81	90	20.2653
GGGGUGGGG	chr7:130146012-130146259(-)$1	247	88	97	22.4081
GGUGAGGGG	chr22:21802254-21802491(+)$1	237	159	168	16.1836
GGGCUGGGG	chr22:39131168-39131454(-)$1	286	245	254	18.3265
GGGAAGGGG	chr11:4113968-4114220(+)$1	252	148	157	16.0816
GGGAUGGGG	chr16:85647231-85647468(+)$1	237	87	96	18.2244
AGGGUGGGG	chr1:46767347-46767652(-)$1	305	76	85	18.5306
GGGGUGGGG	chr21:36163854-36164098(-)$1	244	97	106	22.4081
ggggagggg	chr1:65775812-65776118(+)$1	306	77	86	20.2653

#otherMatches

#Struct PSSM
CCC{IIIII	chr16:447687-447945(+)$1	258	17	26	18.3265
JJJJJJJJJ	chr20:62271929-62272211(-)$1	282	47	56	18.2244
:::eeeee[	chr1:28176883-28177200(+)$1	317	224	233	22.4081
:========	chr19:2101469-2101775(-)$1	306	43	52	20.2653
JJJJJJJJb	chr2:30480629-30480876(+)$1	247	217	226	18.0204
"dddd[bbq	chr17:38077891-38078131(-)$1	240	94	103	17.6122
FFFF}DDDD	chr22:20111647-20111916(+)$1	269	256	265	19.1428
a]ggggggg	chr19:47724184-47724438(-)$1	254	99	108	18.0204
ee22cccEE	chr19:42752029-42752413(-)$1	384	360	369	22.4081
JJJJA{DDD	chr19:49964743-49965003(+)$1	260	48	57	18.3265
fccc[dddd	chr19:6229324-6229603(-)$1	279	94	103	18.3265
"""======	chr16:4307682-4308023(-)$1	341	152	161	18.3265
MDDDDNNNN	chr19:42788122-42788379(+)$1	257	43	52	19.1428
qqqqqqqqc	chr11:991676-991943(+)$1	267	98	107	20.2653
eeee]a22f	chr16:69151851-69152172(-)$1	321	138	147	22.4081
:::::ccc[	chr22:20110906-20111130(+)$1	224	88	97	18.1224
dddda[eee	chr19:1853650-1853883(-)$1	233	43	52	18.2244
cc]bbIIII	chr1:27731642-27731918(-)$1	276	129	138	20.2653
:::::ccc[	chr22:20110960-20111198(+)$1	238	34	43	18.1224
JJJJJJJJJ	chr1:153780361-153780620(-)$1	259	24	33	16.3877
d:EEEEE}E	chr2:183902896-183903194(-)$1	298	107	116	22.4081
ggggggg[c	chr11:44641718-44641978(+)$1	260	77	86	18.2244
e####a[cc	chr5:81045681-81045934(-)$1	253	62	71	16.1836
ddd[a!!cc	chr22:20112428-20112654(+)$1	226	80	89	18.0204
ccc]ggggg	chr3:48199321-48199595(-)$1	274	96	105	22.4081
cc"""ffff	chr17:79282706-79282953(-)$1	247	50	59	18.3265
EEEEEcccn	chr2:97534556-97534801(-)$1	245	40	49	20.2653
fffffCCC}	chr1:160184357-160184615(+)$1	258	125	134	18.0204
:gggggggm	chr19:4046993-4047237(-)$1	244	50	59	16.3877
llffffffb	chr4:71849797-71850042(+)$1	245	219	228	15.7755
cccffffff	chr19:4121141-4121467(-)$1	326	106	115	18.1224
]iiiiiiii	chr17:79390741-79391033(+)$1	292	95	104	22.4081
[iiiiiiii	chr6:34256144-34256442(-)$1	298	106	115	18.5306
::ggggggg	chr21:45403286-45403534(+)$1	248	23	32	18.0204
d]a]eeeee	chr17:56408173-56408403(-)$1	230	183	192	22.4081
DDDDCCCCC	chr16:88960014-88960280(-)$1	266	12	21	18.1224
2========	chr19:49406314-49406562(+)$1	248	207	216	18.0204
:::::::::	chr19:14500093-14500385(+)$1	292	9	18	20.2653
fGGGGGGG}	chr11:68834775-68835052(+)$1	277	148	157	22.4081
eee]fffff	chr1:161332529-161332761(+)$1	232	72	81	18.1224
5555ccc]h	chr9:134371928-134372181(+)$1	253	81	90	20.2653
gggggggbb	chr7:130146012-130146259(-)$1	247	88	97	22.4081
uuudddd22	chr22:21802254-21802491(+)$1	237	159	168	16.1836
JJJJJJJA}	chr22:39131168-39131454(-)$1	286	245	254	18.3265
hhhhhhhh[	chr11:4113968-4114220(+)$1	252	148	157	16.0816
::::::a[c	chr16:85647231-85647468(+)$1	237	87	96	18.2244
qqqqqhhhh	chr1:46767347-46767652(-)$1	305	76	85	18.5306
heeeee[ee	chr21:36163854-36164098(-)$1	244	97	106	22.4081
bb22hhhhh	chr1:65775812-65776118(+)$1	306	77	86	20.2653

#DB
(((.(((((	chr16:447687-447945(+)$1	1	17	26	18.3265
(((((((((	chr20:62271929-62272211(-)$1	1	47	56	18.2244
...(((((.	chr1:28176883-28177200(+)$1	1	224	233	22.4081
.((((((((	chr19:2101469-2101775(-)$1	1	43	52	20.2653
))))))))(	chr2:30480629-30480876(+)$1	1	217	226	18.0204
.((((.((.	chr17:38077891-38078131(-)$1	1	94	103	17.6122
)))).))))	chr22:20111647-20111916(+)$1	1	256	265	19.1428
).)))))))	chr19:47724184-47724438(-)$1	1	99	108	18.0204
))..)))))	chr19:42752029-42752413(-)$1	1	360	369	22.4081
(((((.(((	chr19:49964743-49965003(+)$1	1	48	57	18.3265
)(((.((((	chr19:6229324-6229603(-)$1	1	94	103	18.3265
...((((((	chr16:4307682-4308023(-)$1	1	152	161	18.3265
.((((....	chr19:42788122-42788379(+)$1	1	43	52	19.1428
........)	chr11:991676-991943(+)$1	1	98	107	20.2653
)))).)..)	chr16:69151851-69152172(-)$1	1	138	147	22.4081
.....(((.	chr22:20110906-20111130(+)$1	1	88	97	18.1224
(((((.(((	chr19:1853650-1853883(-)$1	1	43	52	18.2244
)).))))))	chr1:27731642-27731918(-)$1	1	129	138	20.2653
.....(((.	chr22:20110960-20111198(+)$1	1	34	43	18.1224
(((((((((	chr1:153780361-153780620(-)$1	1	24	33	16.3877
).))))).)	chr2:183902896-183903194(-)$1	1	107	116	22.4081
(((((((.(	chr11:44641718-44641978(+)$1	1	77	86	18.2244
(....(.((	chr5:81045681-81045934(-)$1	1	62	71	16.1836
(((.(..((	chr22:20112428-20112654(+)$1	1	80	89	18.0204
))).)))))	chr3:48199321-48199595(-)$1	1	96	105	22.4081
((...((((	chr17:79282706-79282953(-)$1	1	50	59	18.3265
((((((((.	chr2:97534556-97534801(-)$1	1	40	49	20.2653
)))))))).	chr1:160184357-160184615(+)$1	1	125	134	18.0204
.(((((((.	chr19:4046993-4047237(-)$1	1	50	59	16.3877
..)))))))	chr4:71849797-71850042(+)$1	1	219	228	15.7755
(((((((((	chr19:4121141-4121467(-)$1	1	106	115	18.1224
.))))))))	chr17:79390741-79391033(+)$1	1	95	104	22.4081
.((((((((	chr6:34256144-34256442(-)$1	1	106	115	18.5306
..(((((((	chr21:45403286-45403534(+)$1	1	23	32	18.0204
).).)))))	chr17:56408173-56408403(-)$1	1	183	192	22.4081
(((((((((	chr16:88960014-88960280(-)$1	1	12	21	18.1224
.))))))))	chr19:49406314-49406562(+)$1	1	207	216	18.0204
.........	chr19:14500093-14500385(+)$1	1	9	18	20.2653
)))))))).	chr11:68834775-68835052(+)$1	1	148	157	22.4081
))).)))))	chr1:161332529-161332761(+)$1	1	72	81	18.1224
....))).)	chr9:134371928-134372181(+)$1	1	81	90	20.2653
)))))))((	chr7:130146012-130146259(-)$1	1	88	97	22.4081
...))))..	chr22:21802254-21802491(+)$1	1	159	168	16.1836
)))))))).	chr22:39131168-39131454(-)$1	1	245	254	18.3265
((((((((.	chr11:4113968-4114220(+)$1	1	148	157	16.0816
......(.(	chr16:85647231-85647468(+)$1	1	87	96	18.2244
.....))))	chr1:46767347-46767652(-)$1	1	76	85	18.5306
)(((((.((	chr21:36163854-36164098(-)$1	1	97	106	22.4081
))..)))))	chr1:65775812-65776118(+)$1	1	77	86	20.2653

#PSSM
G : 0.73	g : 0.12	A : 0.08	U : 0.02	C : 0.02	c : 0.02	
G : 0.79	g : 0.14	A : 0.06	
G : 0.75	g : 0.12	A : 0.04	U : 0.04	u : 0.02	C : 0.02	
G : 0.75	g : 0.12	C : 0.04	A : 0.04	c : 0.02	U : 0.02	
U : 0.63	A : 0.20	u : 0.06	a : 0.06	C : 0.02	c : 0.02	
G : 0.83	g : 0.14	A : 0.02	
G : 0.77	g : 0.14	C : 0.06	A : 0.02	
G : 0.85	g : 0.14	
G : 0.79	g : 0.14	A : 0.06	

#score	937.489795918368
#seq	49
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_transcript_m2_run2.nuc.txt

#NT
Ccacacacacacaga	chrX:3740800-3741048(-)$1	248	124	139	30.1515
ccacacacagacaca	chr16:46949863-46950100(+)$1	237	6	21	31.7424
ucacacacucacaca	chr9:95973890-95974213(+)$1	323	267	282	29.7727
acacacacacaaaca	chr3:126220799-126221057(-)$1	258	1	16	32.5757
acacacacaaacgca	chr11:2153098-2153304(-)$1	206	23	38	30.6818
ccacauacacacaca	chr16:46949145-46949381(+)$1	236	46	61	30.6060
ccacacacacauaca	chr7:55271725-55271973(+)$1	248	208	223	30.0757
acacacacaaacaca	chr11:2152629-2152834(-)$1	205	28	43	34.9242
acacaugcacacaca	chr7:4287848-4288095(+)$1	247	91	106	28.7878
acacaugcacacaca	chr7:1927658-1927905(-)$1	247	104	119	28.7878
acacacucaaacaca	chr9:96412544-96412803(+)$1	259	20	35	30.3787
acacacacauauaca	chr19:54062508-54062797(+)$1	289	1	16	30.2272
caacacacacacaca	chr10:383261-383527(-)$1	266	164	179	30.1515
acacacauacacaca	chr11:70462975-70463189(-)$1	214	119	134	32.9545
acagacacacacaca	chr7:157582678-157583016(-)$1	338	78	93	32.7272
acacacaaacacaca	chr7:158052167-158052534(-)$1	367	108	123	32.7272
Gcacacacacacaca	chr2:225407031-225407428(-)$1	397	139	154	34.0909
acacacacaaacgca	chr11:2152988-2153191(-)$1	203	49	64	30.6818
ccacacacacacaga	chr12:123995539-123995759(-)$1	220	19	34	30.1515
ACACGCACACACACU	chr4:5827620-5827846(+)$1	226	111	126	28.0303
gcacacacccacaca	chr17:80785494-80785723(+)$1	229	74	89	29.6212
acacacacacacacc	chr10:118658825-118659085(-)$1	260	54	69	32.8030
gcacacacauacaca	chr7:157610692-157610945(-)$1	253	16	31	31.6666
acacacacaaacaca	chr11:2152783-2152985(-)$1	202	55	70	34.9242
AUAUACACACACACA	chr22:47554702-47554953(+)$1	251	54	69	28.4090
acacacacaaacaca	chr11:2152885-2153101(-)$1	216	171	186	34.9242
acacacacauacaca	chr6:2376296-2376566(+)$1	270	92	107	34.8484
acacgcacacacaca	chr17:94939-95271(-)$1	332	242	257	32.6515
acacacauacacaca	chr19:1388992-1389298(+)$1	306	6	21	32.9545
ucacacacacacgca	chr4:1019789-1020081(+)$1	292	5	20	29.8484
acgcacacacacaca	chr8:145826652-145826914(-)$1	262	27	42	32.5757
acaaacacacacaca	chr19:4036370-4036584(+)$1	214	65	80	32.8030
acacacacaaacaca	chr11:2152648-2152852(-)$1	204	46	61	34.9242
acacacacacacacc	chr7:94833827-94834153(+)$1	326	78	93	32.8030
ccacacacauacaca	chr7:55270738-55270967(+)$1	229	94	109	32.2727
acacacacgcacaca	chr21:44082441-44082698(+)$1	257	171	186	32.8787
acacacacaccccca	chr8:38776184-38776460(+)$1	276	2	17	28.4090
acacacacacacaGA	chrX:53009787-53010059(-)$1	272	82	97	32.7272
gcacauacacacaca	chr4:187123845-187124072(+)$1	227	150	165	29.9999
CCACACACACACACA	chr22:47554497-47554729(+)$1	232	26	41	34.6969
acacacacaaacaca	chr11:2152780-2152983(-)$1	203	53	68	34.9242
AUacacacacacacc	chr5:150487638-150487906(-)$1	268	169	184	28.4090
CCACACACACACACA	chr22:47554343-47554583(+)$1	240	180	195	34.6969
acacccacacacaca	chr16:46949601-46949850(+)$1	249	39	54	32.5757
ccacacacauacaca	chr18:6110585-6110841(-)$1	256	190	205	32.2727
ACAUACACUCACACA	chrX:3741222-3741514(-)$1	292	42	57	28.4848
acccacacacccaca	chr14:93144454-93144766(+)$1	312	202	217	28.1818
acacacacaaacaca	chr11:2152787-2152989(-)$1	202	59	74	34.9242
agacacacauacaca	chr17:38243316-38243618(+)$1	302	30	45	30.3030
acacacacaugcaca	chr11:70482486-70482732(-)$1	246	53	68	30.2272
ucccacacacacaca	chr9:135252003-135252275(-)$1	272	1	16	29.4696
ccacacacagacaca	chr3:194829819-194830151(-)$1	332	53	68	31.7424
ccacacacauacaca	chr17:78716331-78716691(+)$1	360	77	92	32.2727
acacauauacacaca	chr22:47400140-47400411(+)$1	271	5	20	28.8636
acacacacacacaca	chr15:81192972-81193299(-)$1	327	281	296	37.2727
acacacgcacaccca	chr17:80786938-80787153(+)$1	215	11	26	28.4848
acaaacacacacaca	chr17:6614667-6614876(-)$1	209	0	15	32.8030
auacacacagacaca	chr22:47554815-47555033(+)$1	218	200	215	29.9242
acacacaugcacaca	chr17:715715-716035(-)$1	320	6	21	28.5606
acacacacaaacaca	chr11:2152793-2153000(-)$1	207	70	85	34.9242
acacacacacacaca	chr6:71236263-71236655(+)$1	392	190	205	37.2727
acacacacauacaca	chr16:11265930-11266220(+)$1	290	44	59	34.8484
acacauccacacaca	chr17:79943045-79943312(+)$1	267	20	35	28.6363
ucacacacucacaca	chr9:95974218-95974455(+)$1	237	70	85	29.7727
acacacacauccaca	chr17:55726459-55726740(+)$1	281	143	158	30.3787

#otherMatches

#Struct PSSM
uuuuuuuuuuuubb3	chr11:2153189-2153391(-)$1	202	110	125	30.6818
^^^^^^^^^^^^^dd	chrX:3740800-3741048(-)$1	248	124	139	30.1515
cbb[dddd"""eeee	chr16:46949863-46950100(+)$1	237	6	21	31.7424
:::::::::::::::	chr9:95973890-95974213(+)$1	323	267	282	29.7727
:::::::::::::::	chr3:126220799-126221057(-)$1	258	1	16	32.5757
:::::::::::::::	chr11:2153098-2153304(-)$1	206	23	38	30.6818
^^^^^^^^^^^^^^^	chr16:46949145-46949381(+)$1	236	46	61	30.6060
:::::::::::::::	chr7:55271725-55271973(+)$1	248	208	223	30.0757
:::::::::::::::	chr11:2152629-2152834(-)$1	205	28	43	34.9242
:::::dddd^^^^^^	chr7:4287848-4288095(+)$1	247	91	106	28.7878
$$$ddddoooooodd	chr7:1927658-1927905(-)$1	247	104	119	28.7878
cnnnnnccc::::::	chr9:96412544-96412803(+)$1	259	20	35	30.3787
:::::::::::::::	chr19:54062508-54062797(+)$1	289	1	16	30.2272
++++++++++++++d	chr10:383261-383527(-)$1	266	164	179	30.1515
:::::::::::::::	chr11:70462975-70463189(-)$1	214	119	134	32.9545
:::ccc^^^^^^^^^	chr7:157582678-157583016(-)$1	338	78	93	32.7272
0000000000ggggg	chr7:158052167-158052534(-)$1	367	108	123	32.7272
cwwwwwwwwwwwwww	chr2:225407031-225407428(-)$1	397	139	154	34.0909
uuuuuuuuuuuubb:	chr11:2152988-2153191(-)$1	203	49	64	30.6818
:::::::::::::::	chr12:123995539-123995759(-)$1	220	19	34	30.1515
mmdddd:::::::::	chr4:5827620-5827846(+)$1	226	111	126	28.0303
EEEEEQQQQQQQQFF	chr17:80785494-80785723(+)$1	229	74	89	29.6212
:::::::::::::::	chr10:118658825-118659085(-)$1	260	54	69	32.8030
EEE::::::::::::	chr7:157610692-157610945(-)$1	253	16	31	31.6666
:::::::::::::::	chr11:2152783-2152985(-)$1	202	55	70	34.9242
^^^^^^^^^^^^^^^	chr22:47554702-47554953(+)$1	251	54	69	28.4090
:::::::::::::::	chr11:2152885-2153101(-)$1	216	171	186	34.9242
::::::eeeeemmmm	chr6:2376296-2376566(+)$1	270	92	107	34.8484
uuuuccc00000000	chr17:94939-95271(-)$1	332	242	257	32.6515
DD:::::::::::::	chr19:1388992-1389298(+)$1	306	6	21	32.9545
CC::::::::::ccc	chr4:1019789-1020081(+)$1	292	5	20	29.8484
::::::::::::::D	chr8:145826652-145826914(-)$1	262	27	42	32.5757
c::::::::::::::	chr19:4036370-4036584(+)$1	214	65	80	32.8030
:::::::::::::::	chr11:2152648-2152852(-)$1	204	46	61	34.9242
333bb22dddd::::	chr7:94833827-94834153(+)$1	326	78	93	32.8030
:::::::::::::::	chr7:55270738-55270967(+)$1	229	94	109	32.2727
::::::::cccpppp	chr21:44082441-44082698(+)$1	257	171	186	32.8787
:::::::::::::::	chr8:38776184-38776460(+)$1	276	2	17	28.4090
^^^^^^^^^^^^eee	chrX:53009787-53010059(-)$1	272	82	97	32.7272
ddduuuuuuuuuuuu	chr4:187123845-187124072(+)$1	227	150	165	29.9999
cc:::::::::::::	chr22:47554497-47554729(+)$1	232	26	41	34.6969
:::::::::::::::	chr11:2152780-2152983(-)$1	203	53	68	34.9242
qqqqqqqqdddd]bb	chr5:150487638-150487906(-)$1	268	169	184	28.4090
c::::::::::::::	chr22:47554343-47554583(+)$1	240	180	195	34.6969
:::::::::::::::	chr16:46949601-46949850(+)$1	249	39	54	32.5757
::::::::::::ggg	chr18:6110585-6110841(-)$1	256	190	205	32.2727
^^^^^^^^^^^^^^^	chrX:3741222-3741514(-)$1	292	42	57	28.4848
:::::::::::::::	chr14:93144454-93144766(+)$1	312	202	217	28.1818
:::::::::::::::	chr11:2152787-2152989(-)$1	202	59	74	34.9242
^^^^^^^^^^^^^^^	chr17:38243316-38243618(+)$1	302	30	45	30.3030
::::::::::DDDD{	chr11:70482486-70482732(-)$1	246	53	68	30.2272
EEEETTTTTTTTTTT	chr9:135252003-135252275(-)$1	272	1	16	29.4696
CCCCC::::::::::	chr3:194829819-194830151(-)$1	332	53	68	31.7424
:::::::::::::::	chr17:78716331-78716691(+)$1	360	77	92	32.2727
:::::::::::::::	chr22:47400140-47400411(+)$1	271	5	20	28.8636
@@@@@@@@@@@@@GG	chr15:81192972-81193299(-)$1	327	281	296	37.2727
oooooobb:::::::	chr17:80786938-80787153(+)$1	215	11	26	28.4848
:::::::::::::::	chr17:6614667-6614876(-)$1	209	0	15	32.8030
HHHHH::::::::::	chr22:47554815-47555033(+)$1	218	200	215	29.9242
FFFMMMMDDDDLLLC	chr17:715715-716035(-)$1	320	6	21	28.5606
:::::::::::::::	chr11:2152793-2153000(-)$1	207	70	85	34.9242
=^^^^^^^^^^^^^^	chr6:71236263-71236655(+)$1	392	190	205	37.2727
2bb::::::::::dd	chr16:11265930-11266220(+)$1	290	44	59	34.8484
:::::DDDD{EEEEE	chr17:79943045-79943312(+)$1	267	20	35	28.6363
:::::::::::::::	chr9:95974218-95974455(+)$1	237	70	85	29.7727
:::::::::::::::	chr17:55726459-55726740(+)$1	281	143	158	30.3787

#DB
............)).	chr11:2153189-2153391(-)$1	1	110	125	30.6818
.............))	chrX:3740800-3741048(-)$1	1	124	139	30.1515
(((.((((...((((	chr16:46949863-46950100(+)$1	1	6	21	31.7424
...............	chr9:95973890-95974213(+)$1	1	267	282	29.7727
...............	chr3:126220799-126221057(-)$1	1	1	16	32.5757
...............	chr11:2153098-2153304(-)$1	1	23	38	30.6818
...............	chr16:46949145-46949381(+)$1	1	46	61	30.6060
...............	chr7:55271725-55271973(+)$1	1	208	223	30.0757
...............	chr11:2152629-2152834(-)$1	1	28	43	34.9242
.....((((......	chr7:4287848-4288095(+)$1	1	91	106	28.7878
...((((......))	chr7:1927658-1927905(-)$1	1	104	119	28.7878
(.....)))......	chr9:96412544-96412803(+)$1	1	20	35	30.3787
...............	chr19:54062508-54062797(+)$1	1	1	16	30.2272
..............(	chr10:383261-383527(-)$1	1	164	179	30.1515
...............	chr11:70462975-70463189(-)$1	1	119	134	32.9545
...(((.........	chr7:157582678-157583016(-)$1	1	78	93	32.7272
..........)))))	chr7:158052167-158052534(-)$1	1	108	123	32.7272
(..............	chr2:225407031-225407428(-)$1	1	139	154	34.0909
............)).	chr11:2152988-2153191(-)$1	1	49	64	30.6818
...............	chr12:123995539-123995759(-)$1	1	19	34	30.1515
..)))).........	chr4:5827620-5827846(+)$1	1	111	126	28.0303
(((((........((	chr17:80785494-80785723(+)$1	1	74	89	29.6212
...............	chr10:118658825-118659085(-)$1	1	54	69	32.8030
(((............	chr7:157610692-157610945(-)$1	1	16	31	31.6666
...............	chr11:2152783-2152985(-)$1	1	55	70	34.9242
...............	chr22:47554702-47554953(+)$1	1	54	69	28.4090
...............	chr11:2152885-2153101(-)$1	1	171	186	34.9242
......(((((....	chr6:2376296-2376566(+)$1	1	92	107	34.8484
....)))........	chr17:94939-95271(-)$1	1	242	257	32.6515
((.............	chr19:1388992-1389298(+)$1	1	6	21	32.9545
((..........(((	chr4:1019789-1020081(+)$1	1	5	20	29.8484
..............(	chr8:145826652-145826914(-)$1	1	27	42	32.5757
)..............	chr19:4036370-4036584(+)$1	1	65	80	32.8030
...............	chr11:2152648-2152852(-)$1	1	46	61	34.9242
...))..))))....	chr7:94833827-94834153(+)$1	1	78	93	32.8030
...............	chr7:55270738-55270967(+)$1	1	94	109	32.2727
........(((....	chr21:44082441-44082698(+)$1	1	171	186	32.8787
...............	chr8:38776184-38776460(+)$1	1	2	17	28.4090
............)))	chrX:53009787-53010059(-)$1	1	82	97	32.7272
(((............	chr4:187123845-187124072(+)$1	1	150	165	29.9999
)).............	chr22:47554497-47554729(+)$1	1	26	41	34.6969
...............	chr11:2152780-2152983(-)$1	1	53	68	34.9242
........)))).))	chr5:150487638-150487906(-)$1	1	169	184	28.4090
)..............	chr22:47554343-47554583(+)$1	1	180	195	34.6969
...............	chr16:46949601-46949850(+)$1	1	39	54	32.5757
............(((	chr18:6110585-6110841(-)$1	1	190	205	32.2727
...............	chrX:3741222-3741514(-)$1	1	42	57	28.4848
...............	chr14:93144454-93144766(+)$1	1	202	217	28.1818
...............	chr11:2152787-2152989(-)$1	1	59	74	34.9242
...............	chr17:38243316-38243618(+)$1	1	30	45	30.3030
..........((((.	chr11:70482486-70482732(-)$1	1	53	68	30.2272
((((...........	chr9:135252003-135252275(-)$1	1	1	16	29.4696
(((((..........	chr3:194829819-194830151(-)$1	1	53	68	31.7424
...............	chr17:78716331-78716691(+)$1	1	77	92	32.2727
...............	chr22:47400140-47400411(+)$1	1	5	20	28.8636
.............))	chr15:81192972-81193299(-)$1	1	281	296	37.2727
......)).......	chr17:80786938-80787153(+)$1	1	11	26	28.4848
...............	chr17:6614667-6614876(-)$1	1	0	15	32.8030
)))))..........	chr22:47554815-47555033(+)$1	1	200	215	29.9242
(((....((((...(	chr17:715715-716035(-)$1	1	6	21	28.5606
...............	chr11:2152793-2153000(-)$1	1	70	85	34.9242
(..............	chr6:71236263-71236655(+)$1	1	190	205	37.2727
.))..........((	chr16:11265930-11266220(+)$1	1	44	59	34.8484
.....((((.(((((	chr17:79943045-79943312(+)$1	1	20	35	28.6363
...............	chr9:95974218-95974455(+)$1	1	70	85	29.7727
...............	chr17:55726459-55726740(+)$1	1	143	158	30.3787

#PSSM
a : 0.63	c : 0.13	u : 0.06	A : 0.06	C : 0.04	g : 0.04	G : 0.01	
c : 0.86	C : 0.06	U : 0.03	a : 0.01	g : 0.01	u : 0.01	
a : 0.87	A : 0.07	c : 0.03	g : 0.01	
c : 0.87	C : 0.04	U : 0.03	a : 0.03	g : 0.01	
a : 0.89	A : 0.06	G : 0.01	g : 0.01	c : 0.01	
c : 0.83	u : 0.09	C : 0.07	
a : 0.84	A : 0.07	g : 0.04	u : 0.01	c : 0.01	
c : 0.84	C : 0.07	u : 0.06	a : 0.01	
a : 0.84	A : 0.06	u : 0.03	g : 0.03	c : 0.01	U : 0.01	
c : 0.56	a : 0.16	u : 0.15	C : 0.07	g : 0.04	
a : 0.86	A : 0.07	c : 0.04	g : 0.01	
c : 0.87	C : 0.07	u : 0.03	a : 0.01	
a : 0.83	A : 0.07	g : 0.06	c : 0.03	
c : 0.87	C : 0.07	g : 0.03	G : 0.01	
a : 0.86	A : 0.07	c : 0.04	U : 0.01	

#score	2087.878787878785
#seq	66
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_UTR_m2_run1.nuc.txt

#NT
GGGCUG	chr6:30294315-30294597(-)$1	282	33	39	14.6923
AGGCUG	chr16:84215714-84216047(-)$1	333	233	239	14.1538
AGGCUG	chr17:34856573-34856893(-)$1	320	62	68	14.1538
UGGCUG	chr19:24216173-24216521(+)$1	348	76	82	14.3076
UGGCUG	chr18:3456263-3456534(+)$1	271	228	234	14.3076
GGGCUG	chr14:39736608-39736858(+)$1	250	91	97	14.6923
CGGCUG	chr11:82868102-82868352(+)$1	250	164	170	13.8461
gggcug	chr10:5025122-5025498(+)$1	376	142	148	14.6923
UGGCUG	chr11:14521142-14521444(-)$1	302	6	12	14.3076
UGGCUG	chr3:184102905-184103127(+)$1	222	14	20	14.3076
AGGCUG	chr16:89603638-89603942(+)$1	304	276	282	14.1538
GGGCUG	chr9:100818961-100819252(+)$1	291	7	13	14.6923
UGGCUG	chr16:22019563-22019861(+)$1	298	199	205	14.3076
CGGCUG	chr17:48629360-48629630(+)$1	270	75	81	13.8461
CGGCUG	chr2:61404600-61404860(+)$1	260	156	162	13.8461
AGGCUG	chr10:103577753-103578018(-)$1	265	20	26	14.1538
GGGCUG	chr17:80190050-80190278(+)$1	228	50	56	14.6923
UGGCUG	chr15:42129352-42129669(+)$1	317	98	104	14.3076
AGGCUG	chr9:117046904-117047108(+)$1	204	196	202	14.1538
UGGCUG	chr9:139743573-139743849(+)$1	276	58	64	14.3076
UGGCUG	chr21:46915173-46915403(+)$1	230	201	207	14.3076
CGGCUG	chr9:116999160-116999402(+)$1	242	38	44	13.8461
CGGCUG	chr19:45853768-45854038(-)$1	270	34	40	13.8461
AGGCUG	chr2:232576515-232576781(+)$1	266	106	112	14.1538
AGGCUG	chr21:16436954-16437212(-)$1	258	122	128	14.1538
GGGCUG	chr10:102729183-102729474(+)$1	291	209	215	14.6923
AGGCUG	chr16:457353-457644(+)$1	291	30	36	14.1538
UGGCUG	chr17:73201687-73202001(+)$1	314	9	15	14.3076
GGGCUG	chr17:4575256-4575564(-)$1	308	288	294	14.6923
GGGCUG	chr12:104697593-104697964(+)$1	371	148	154	14.6923
GGGCUG	chr11:67810936-67811207(+)$1	271	44	50	14.6923
AGGCUG	chr16:841221-841474(+)$1	253	111	117	14.1538
GGGCUG	chr4:124319265-124319549(+)$1	284	98	104	14.6923
GGGCUG	chr17:47005906-47006180(+)$1	274	57	63	14.6923
UGGCUG	chr17:63525938-63526230(-)$1	292	193	199	14.3076
AGGCUG	chr5:78373202-78373526(+)$1	324	185	191	14.1538
UGGCUG	chr11:126145864-126146227(+)$1	363	180	186	14.3076
GGGCUG	chr9:117050880-117051123(+)$1	243	44	50	14.6923
UGGCUG	chr11:66384000-66384290(+)$1	290	175	181	14.3076
GGGCUG	chr9:117020720-117020926(+)$1	206	1	7	14.6923
AGGCUG	chr16:16248442-16248744(-)$1	302	18	24	14.1538
GGGCUG	chr16:22337033-22337349(+)$1	316	56	62	14.6923
CGGCUG	chr2:128180564-128180784(+)$1	220	154	160	13.8461
UGGCUG	chr20:3893130-3893382(+)$1	252	16	22	14.3076
GGGCUG	chr6:32939471-32939692(+)$1	221	74	80	14.6923
GGGCUG	chr16:89346553-89346829(-)$1	276	60	66	14.6923
AGGCUG	chr2:61405877-61406193(+)$1	316	125	131	14.1538
CGGCUG	chr1:29508046-29508391(-)$1	345	5	11	13.8461
AGGCUG	chr1:46073535-46073847(+)$1	312	96	102	14.1538
UGGCUG	chr6:33164137-33164457(-)$1	320	26	32	14.3076
AGGCUG	chr16:24802721-24802990(+)$1	269	145	151	14.1538
UGGCUG	chr16:24805804-24806066(+)$1	262	79	85	14.3076
CGGCUG	chr20:32247183-32247462(-)$1	279	112	118	13.8461
CGGCUG	chr17:17740031-17740329(-)$1	298	188	194	13.8461
GGGCUG	chr6:32939492-32939729(+)$1	237	53	59	14.6923
GGGCUG	chr19:19105847-19106166(-)$1	319	151	157	14.6923
CGGCUG	chr5:172755106-172755408(-)$1	302	224	230	13.8461
UGGCUG	chr6:167412764-167413112(+)$1	348	42	48	14.3076
GGGCUG	chr9:117052460-117052710(+)$1	250	52	58	14.6923
AGGCUG	chr17:27074138-27074401(+)$1	263	10	16	14.1538
GGGCUG	chr6:127587957-127588278(+)$1	321	303	309	14.6923
UGGCUG	chr21:38471095-38471410(+)$1	315	129	135	14.3076
cggcug	chr1:21113569-21113904(-)$1	335	113	119	13.8461
GGGCUG	chr9:117037888-117038148(+)$1	260	106	112	14.6923

#otherMatches

#Struct PSSM
mmccc2	chr16:89348866-89349129(-)$1	263	125	131	14.6923
BB{DDD	chr6:30294315-30294597(-)$1	282	33	39	14.6923
FFFFFZ	chr16:84215714-84216047(-)$1	333	233	239	14.1538
====""	chr17:34856573-34856893(-)$1	320	62	68	14.1538
eee[dd	chr19:24216173-24216521(+)$1	348	76	82	14.3076
::cccn	chr18:3456263-3456534(+)$1	271	228	234	14.3076
======	chr14:39736608-39736858(+)$1	250	91	97	14.6923
hhhh]b	chr11:82868102-82868352(+)$1	250	164	170	13.8461
IIIII:	chr10:5025122-5025498(+)$1	376	142	148	14.6923
qqqqqq	chr11:14521142-14521444(-)$1	302	6	12	14.3076
$$$ggg	chr3:184102905-184103127(+)$1	222	14	20	14.3076
ufffff	chr16:89603638-89603942(+)$1	304	276	282	14.1538
dddd[e	chr9:100818961-100819252(+)$1	291	7	13	14.6923
YYCCCZ	chr16:22019563-22019861(+)$1	298	199	205	14.3076
==FFFF	chr17:48629360-48629630(+)$1	270	75	81	13.8461
fffddd	chr2:61404600-61404860(+)$1	260	156	162	13.8461
oooooo	chr10:103577753-103578018(-)$1	265	20	26	14.1538
bbFFFF	chr17:80190050-80190278(+)$1	228	50	56	14.6923
CCCddd	chr15:42129352-42129669(+)$1	317	98	104	14.3076
ddd]bb	chr9:117046904-117047108(+)$1	204	196	202	14.1538
eee[cc	chr9:139743573-139743849(+)$1	276	58	64	14.3076
}BB}DD	chr21:46915173-46915403(+)$1	230	201	207	14.3076
[ddddq	chr9:116999160-116999402(+)$1	242	38	44	13.8461
ggggg&	chr19:45853768-45854038(-)$1	270	34	40	13.8461
2dddd:	chr2:232576515-232576781(+)$1	266	106	112	14.1538
eeeee]	chr21:16436954-16437212(-)$1	258	122	128	14.1538
eeee:D	chr10:102729183-102729474(+)$1	291	209	215	14.6923
eeee[d	chr16:457353-457644(+)$1	291	30	36	14.1538
::::::	chr17:73201687-73202001(+)$1	314	9	15	14.3076
ZZZBB}	chr17:4575256-4575564(-)$1	308	288	294	14.6923
]a]eee	chr12:104697593-104697964(+)$1	371	148	154	14.6923
JJJJJJ	chr11:67810936-67811207(+)$1	271	44	50	14.6923
}A}GGG	chr16:841221-841474(+)$1	253	111	117	14.1538
bdddd[	chr4:124319265-124319549(+)$1	284	98	104	14.6923
nnnbb2	chr17:47005906-47006180(+)$1	274	57	63	14.6923
ffffff	chr17:63525938-63526230(-)$1	292	193	199	14.3076
mmbbcc	chr5:78373202-78373526(+)$1	324	185	191	14.1538
FFFYYD	chr11:126145864-126146227(+)$1	363	180	186	14.3076
dddooo	chr9:117050880-117051123(+)$1	243	44	50	14.6923
666bb]	chr11:66384000-66384290(+)$1	290	175	181	14.3076
eeeeel	chr9:117020720-117020926(+)$1	206	1	7	14.6923
cc[a[b	chr16:16248442-16248744(-)$1	302	18	24	14.1538
BBhhhh	chr16:22337033-22337349(+)$1	316	56	62	14.6923
}CCC}C	chr2:128180564-128180784(+)$1	220	154	160	13.8461
LCCCPP	chr20:3893130-3893382(+)$1	252	16	22	14.3076
dd]a33	chr6:32939471-32939692(+)$1	221	74	80	14.6923
ddddee	chr16:89346553-89346829(-)$1	276	60	66	14.6923
eemmmm	chr2:61405877-61406193(+)$1	316	125	131	14.1538
:EEEEE	chr1:29508046-29508391(-)$1	345	5	11	13.8461
fffffn	chr1:46073535-46073847(+)$1	312	96	102	14.1538
FF{CCC	chr6:33164137-33164457(-)$1	320	26	32	14.3076
3a]ccc	chr16:24802721-24802990(+)$1	269	145	151	14.1538
eeeee2	chr16:24805804-24806066(+)$1	262	79	85	14.3076
!fffff	chr20:32247183-32247462(-)$1	279	112	118	13.8461
fFFFFF	chr17:17740031-17740329(-)$1	298	188	194	13.8461
gggggg	chr6:32939492-32939729(+)$1	237	53	59	14.6923
DDDYYB	chr19:19105847-19106166(-)$1	319	151	157	14.6923
dcccll	chr5:172755106-172755408(-)$1	302	224	230	13.8461
!cccll	chr6:167412764-167413112(+)$1	348	42	48	14.3076
fffffn	chr9:117052460-117052710(+)$1	250	52	58	14.6923
IIIIII	chr17:27074138-27074401(+)$1	263	10	16	14.1538
hh]bb]	chr6:127587957-127588278(+)$1	321	303	309	14.6923
GGGGGI	chr21:38471095-38471410(+)$1	315	129	135	14.3076
b[dddd	chr1:21113569-21113904(-)$1	335	113	119	13.8461
ffffff	chr9:117037888-117038148(+)$1	260	106	112	14.6923

#DB
..))).	chr16:89348866-89349129(-)$1	1	125	131	14.6923
((.(((	chr6:30294315-30294597(-)$1	1	33	39	14.6923
))))).	chr16:84215714-84216047(-)$1	1	233	239	14.1538
((((..	chr17:34856573-34856893(-)$1	1	62	68	14.1538
(((.((	chr19:24216173-24216521(+)$1	1	76	82	14.3076
..(((.	chr18:3456263-3456534(+)$1	1	228	234	14.3076
))))))	chr14:39736608-39736858(+)$1	1	91	97	14.6923
)))).)	chr11:82868102-82868352(+)$1	1	164	170	13.8461
(((((.	chr10:5025122-5025498(+)$1	1	142	148	14.6923
......	chr11:14521142-14521444(-)$1	1	6	12	14.3076
...(((	chr3:184102905-184103127(+)$1	1	14	20	14.3076
.)))))	chr16:89603638-89603942(+)$1	1	276	282	14.1538
((((.(	chr9:100818961-100819252(+)$1	1	7	13	14.6923
..))).	chr16:22019563-22019861(+)$1	1	199	205	14.3076
))((((	chr17:48629360-48629630(+)$1	1	75	81	13.8461
((((((	chr2:61404600-61404860(+)$1	1	156	162	13.8461
......	chr10:103577753-103578018(-)$1	1	20	26	14.1538
))((((	chr17:80190050-80190278(+)$1	1	50	56	14.6923
)))(((	chr15:42129352-42129669(+)$1	1	98	104	14.3076
))).))	chr9:117046904-117047108(+)$1	1	196	202	14.1538
(((.((	chr9:139743573-139743849(+)$1	1	58	64	14.3076
.)).))	chr21:46915173-46915403(+)$1	1	201	207	14.3076
.((((.	chr9:116999160-116999402(+)$1	1	38	44	13.8461
(((((.	chr19:45853768-45854038(-)$1	1	34	40	13.8461
.)))).	chr2:232576515-232576781(+)$1	1	106	112	14.1538
))))).	chr21:16436954-16437212(-)$1	1	122	128	14.1538
)))).)	chr10:102729183-102729474(+)$1	1	209	215	14.6923
((((.(	chr16:457353-457644(+)$1	1	30	36	14.1538
......	chr17:73201687-73202001(+)$1	1	9	15	14.3076
...)).	chr17:4575256-4575564(-)$1	1	288	294	14.6923
.).)))	chr12:104697593-104697964(+)$1	1	148	154	14.6923
((((((	chr11:67810936-67811207(+)$1	1	44	50	14.6923
.).)))	chr16:841221-841474(+)$1	1	111	117	14.1538
(((((.	chr4:124319265-124319549(+)$1	1	98	104	14.6923
...)).	chr17:47005906-47006180(+)$1	1	57	63	14.6923
((((((	chr17:63525938-63526230(-)$1	1	193	199	14.3076
..))))	chr5:78373202-78373526(+)$1	1	185	191	14.1538
)))..)	chr11:126145864-126146227(+)$1	1	180	186	14.3076
(((...	chr9:117050880-117051123(+)$1	1	44	50	14.6923
...)).	chr11:66384000-66384290(+)$1	1	175	181	14.3076
(((((.	chr9:117020720-117020926(+)$1	1	1	7	14.6923
((.(.(	chr16:16248442-16248744(-)$1	1	18	24	14.1538
((((((	chr16:22337033-22337349(+)$1	1	56	62	14.6923
.))).)	chr2:128180564-128180784(+)$1	1	154	160	13.8461
.(((..	chr20:3893130-3893382(+)$1	1	16	22	14.3076
)).)..	chr6:32939471-32939692(+)$1	1	74	80	14.6923
))))((	chr16:89346553-89346829(-)$1	1	60	66	14.6923
((....	chr2:61405877-61406193(+)$1	1	125	131	14.1538
.(((((	chr1:29508046-29508391(-)$1	1	5	11	13.8461
(((((.	chr1:46073535-46073847(+)$1	1	96	102	14.1538
((.(((	chr6:33164137-33164457(-)$1	1	26	32	14.3076
.).)))	chr16:24802721-24802990(+)$1	1	145	151	14.1538
))))).	chr16:24805804-24806066(+)$1	1	79	85	14.3076
.(((((	chr20:32247183-32247462(-)$1	1	112	118	13.8461
))))))	chr17:17740031-17740329(-)$1	1	188	194	13.8461
))))))	chr6:32939492-32939729(+)$1	1	53	59	14.6923
)))..)	chr19:19105847-19106166(-)$1	1	151	157	14.6923
((((..	chr5:172755106-172755408(-)$1	1	224	230	13.8461
.(((..	chr6:167412764-167413112(+)$1	1	42	48	14.3076
(((((.	chr9:117052460-117052710(+)$1	1	52	58	14.6923
((((((	chr17:27074138-27074401(+)$1	1	10	16	14.1538
)).)).	chr6:127587957-127588278(+)$1	1	303	309	14.6923
((((((	chr21:38471095-38471410(+)$1	1	129	135	14.3076
(.((((	chr1:21113569-21113904(-)$1	1	113	119	13.8461
((((((	chr9:117037888-117038148(+)$1	1	106	112	14.6923

#PSSM
G : 0.32	U : 0.26	A : 0.23	C : 0.15	g : 0.01	c : 0.01	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	

#score	931.0769230769205
#seq	65
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_transcript_m3_run1.nuc.txt

#NT
UGGG	chr1:154232159-154232370(+)$1	211	42	46	11.9999
UGGG	chr3:160232622-160232849(-)$1	227	39	43	11.9999
UGGG	chr11:93454867-93455081(+)$1	214	52	56	11.9999
UGGG	chr11:93463649-93463853(-)$1	204	40	44	11.9999
UGGG	chr16:70571854-70572089(+)$1	235	158	162	11.9999
uggg	chr1:987913-988161(+)$1	248	0	4	11.9999
UGGG	chr14:95999657-95999863(-)$1	206	66	70	11.9999
UGGG	chr17:37009032-37009237(-)$1	205	10	14	11.9999
UGGG	chr3:169482515-169482731(-)$1	216	189	193	11.9999
uggg	chr17:21109815-21110037(-)$1	222	26	30	11.9999
UGGG	chr17:27050394-27050605(+)$1	211	51	55	11.9999
UGGG	chr12:133107871-133108141(+)$1	270	5	9	11.9999
UGGG	chrX:54840743-54840949(+)$1	206	23	27	11.9999
uggg	chr14:105338367-105338659(+)$1	292	169	173	11.9999
UGGG	chr20:37076628-37076832(+)$1	204	23	27	11.9999
UGGG	chr19:12814341-12814585(-)$1	244	10	14	11.9999
UGGG	chr5:172447719-172447930(+)$1	211	66	70	11.9999
UGGG	chr11:9450314-9450517(+)$1	203	112	116	11.9999
UGGG	chr2:234197316-234197518(+)$1	202	107	111	11.9999
UGGG	chr5:176516858-176517139(+)$1	281	65	69	11.9999
UGGG	chr5:172447681-172447894(+)$1	213	104	108	11.9999
UGGG	chr22:25855567-25855848(+)$1	281	88	92	11.9999
UGGG	chr7:6056407-6056613(+)$1	206	103	107	11.9999
UGGG	chr1:28906884-28907124(-)$1	240	76	80	11.9999
UGGG	chr5:172447712-172447914(+)$1	202	73	77	11.9999
UGGG	chr9:130210729-130210938(-)$1	209	148	152	11.9999
uggg	chr3:129113542-129113833(-)$1	291	82	86	11.9999
uggg	chr21:43368155-43368495(-)$1	340	47	51	11.9999
uggg	chr17:7079711-7079975(-)$1	264	127	131	11.9999
UGGG	chr10:74885766-74885969(-)$1	203	70	74	11.9999
uggg	chr7:138268141-138268346(+)$1	205	31	35	11.9999
UGGG	chr6:31590831-31591042(+)$1	211	0	4	11.9999
UGGG	chr6:133138301-133138505(+)$1	204	197	201	11.9999
UGGG	chr17:27049500-27049711(+)$1	211	67	71	11.9999
UGGG	chr17:75496150-75496430(+)$1	280	125	129	11.9999
UGGG	chrX:153628573-153628795(+)$1	222	39	43	11.9999
UGGG	chr1:93306243-93306446(+)$1	203	9	13	11.9999
UGGG	chr14:91592709-91592918(+)$1	209	58	62	11.9999
UGGG	chr20:37058341-37058547(-)$1	206	76	80	11.9999
UGGG	chr7:158105069-158105329(-)$1	260	43	47	11.9999
UGGG	chr3:160232788-160233015(-)$1	227	15	19	11.9999
UGGG	chr3:129116083-129116291(-)$1	208	34	38	11.9999
UGGG	chr11:62432870-62433075(+)$1	205	5	9	11.9999
UGGG	chr11:9450329-9450534(+)$1	205	97	101	11.9999
uggg	chr22:51149369-51149600(+)$1	231	42	46	11.9999
UGGG	chr16:30721831-30722039(+)$1	208	6	10	11.9999
UGGG	chr15:25330584-25330809(+)$1	225	129	133	11.9999
UGGG	chr7:45144479-45144681(-)$1	202	122	126	11.9999
UGGG	chr6:31590810-31591019(+)$1	209	1	5	11.9999
UGGG	chrX:54840773-54840985(+)$1	212	28	32	11.9999
UGGG	chr17:37009059-37009270(-)$1	211	43	47	11.9999
UGGG	chr8:38626569-38626879(+)$1	310	13	17	11.9999
UGGG	chr9:130210711-130210921(-)$1	210	131	135	11.9999
uggg	chr22:34100678-34100954(-)$1	276	4	8	11.9999
UGGG	chr3:160232656-160232860(-)$1	204	50	54	11.9999
UGGG	chr14:20791293-20791496(-)$1	203	49	53	11.9999
uggg	chr17:70550094-70550384(-)$1	290	8	12	11.9999
ugGG	chr17:79963975-79964189(+)$1	214	36	40	11.9999
uggg	chr13:114267828-114268097(+)$1	269	99	103	11.9999
uggg	chr1:48692628-48692874(+)$1	246	51	55	11.9999
uggg	chr14:105338695-105338965(+)$1	270	16	20	11.9999
UGGG	chr11:93454836-93455040(+)$1	204	83	87	11.9999
UGGG	chr11:62432859-62433065(+)$1	206	16	20	11.9999
uggg	chr18:13445148-13445382(+)$1	234	137	141	11.9999
UGGG	chr5:138611896-138612102(+)$1	206	27	31	11.9999
UGGG	chr17:79963843-79964064(+)$1	221	28	32	11.9999
UGGG	chr6:133136377-133136591(+)$1	214	42	46	11.9999
ugGG	chr17:79112233-79112545(-)$1	312	20	24	11.9999
UGGG	chr16:58582377-58582584(-)$1	207	26	30	11.9999
UGGG	chr12:7076465-7076669(-)$1	204	114	118	11.9999
UGGG	chr16:3704377-3704637(+)$1	260	43	47	11.9999
uggg	chr17:7079909-7080200(-)$1	291	210	214	11.9999
uggg	chr17:79963911-79964118(+)$1	207	3	7	11.9999
uggg	chr20:61591283-61591530(+)$1	247	42	46	11.9999
UGGG	chr9:130210777-130211003(-)$1	226	213	217	11.9999
uggg	chr21:45378900-45379177(+)$1	277	197	201	11.9999
UGGG	chr11:93463646-93463849(-)$1	203	36	40	11.9999
UGGG	chr11:93463672-93463907(-)$1	235	94	98	11.9999
UGGG	chr3:160232672-160232885(-)$1	213	75	79	11.9999

#otherMatches

#Struct PSSM
bbmm	chr11:8706885-8707087(+)$1	202	186	190	11.9999
DD:f	chr1:154232159-154232370(+)$1	211	42	46	11.9999
mmmf	chr3:160232622-160232849(-)$1	227	39	43	11.9999
eeee	chr11:93454867-93455081(+)$1	214	52	56	11.9999
$$ff	chr11:93463649-93463853(-)$1	204	40	44	11.9999
====	chr16:70571854-70572089(+)$1	235	158	162	11.9999
JJJJ	chr1:987913-988161(+)$1	248	0	4	11.9999
qqqq	chr14:95999657-95999863(-)$1	206	66	70	11.9999
iiii	chr17:37009032-37009237(-)$1	205	10	14	11.9999
llle	chr3:169482515-169482731(-)$1	216	189	193	11.9999
ddbb	chr17:21109815-21110037(-)$1	222	26	30	11.9999
bb!!	chr17:27050394-27050605(+)$1	211	51	55	11.9999
{EEE	chr12:133107871-133108141(+)$1	270	5	9	11.9999
mccc	chrX:54840743-54840949(+)$1	206	23	27	11.9999
dddd	chr14:105338367-105338659(+)$1	292	169	173	11.9999
lggg	chr20:37076628-37076832(+)$1	204	23	27	11.9999
:FFF	chr19:12814341-12814585(-)$1	244	10	14	11.9999
f]==	chr5:172447719-172447930(+)$1	211	66	70	11.9999
eeee	chr11:9450314-9450517(+)$1	203	112	116	11.9999
iiii	chr2:234197316-234197518(+)$1	202	107	111	11.9999
oeee	chr5:176516858-176517139(+)$1	281	65	69	11.9999
f]==	chr5:172447681-172447894(+)$1	213	104	108	11.9999
4fff	chr22:25855567-25855848(+)$1	281	88	92	11.9999
KKGG	chr7:6056407-6056613(+)$1	206	103	107	11.9999
ffff	chr1:28906884-28907124(-)$1	240	76	80	11.9999
f]==	chr5:172447712-172447914(+)$1	202	73	77	11.9999
dddd	chr9:130210729-130210938(-)$1	209	148	152	11.9999
dd[e	chr3:129113542-129113833(-)$1	291	82	86	11.9999
ffff	chr21:43368155-43368495(-)$1	340	47	51	11.9999
::::	chr17:7079711-7079975(-)$1	264	127	131	11.9999
cc::	chr10:74885766-74885969(-)$1	203	70	74	11.9999
GGGG	chr7:138268141-138268346(+)$1	205	31	35	11.9999
:EEE	chr6:31590831-31591042(+)$1	211	0	4	11.9999
eeee	chr6:133138301-133138505(+)$1	204	197	201	11.9999
====	chr17:27049500-27049711(+)$1	211	67	71	11.9999
cccC	chr17:75496150-75496430(+)$1	280	125	129	11.9999
:ddd	chrX:153628573-153628795(+)$1	222	39	43	11.9999
f[a[	chr1:93306243-93306446(+)$1	203	9	13	11.9999
bbgg	chr14:91592709-91592918(+)$1	209	58	62	11.9999
dddd	chr20:37058341-37058547(-)$1	206	76	80	11.9999
nndd	chr7:158105069-158105329(-)$1	260	43	47	11.9999
HHHH	chr3:160232788-160233015(-)$1	227	15	19	11.9999
!ggg	chr3:129116083-129116291(-)$1	208	34	38	11.9999
eeee	chr11:62432870-62433075(+)$1	205	5	9	11.9999
""ff	chr11:9450329-9450534(+)$1	205	97	101	11.9999
ee[c	chr22:51149369-51149600(+)$1	231	42	46	11.9999
====	chr16:30721831-30722039(+)$1	208	6	10	11.9999
====	chr15:25330584-25330809(+)$1	225	129	133	11.9999
b"""	chr7:45144479-45144681(-)$1	202	122	126	11.9999
EEEE	chr6:31590810-31591019(+)$1	209	1	5	11.9999
ddgg	chrX:54840773-54840985(+)$1	212	28	32	11.9999
iiii	chr17:37009059-37009270(-)$1	211	43	47	11.9999
HH{A	chr8:38626569-38626879(+)$1	310	13	17	11.9999
dddd	chr9:130210711-130210921(-)$1	210	131	135	11.9999
{BB{	chr22:34100678-34100954(-)$1	276	4	8	11.9999
mmmf	chr3:160232656-160232860(-)$1	204	50	54	11.9999
====	chr14:20791293-20791496(-)$1	203	49	53	11.9999
JJ{A	chr17:70550094-70550384(-)$1	290	8	12	11.9999
::::	chr17:79963975-79964189(+)$1	214	36	40	11.9999
gg[e	chr13:114267828-114268097(+)$1	269	99	103	11.9999
DA{E	chr1:48692628-48692874(+)$1	246	51	55	11.9999
DD{H	chr14:105338695-105338965(+)$1	270	16	20	11.9999
d!!c	chr11:93454836-93455040(+)$1	204	83	87	11.9999
KDDD	chr11:62432859-62433065(+)$1	206	16	20	11.9999
$$a[	chr18:13445148-13445382(+)$1	234	137	141	11.9999
ffoo	chr5:138611896-138612102(+)$1	206	27	31	11.9999
llii	chr17:79963843-79964064(+)$1	221	28	32	11.9999
CCBB	chr6:133136377-133136591(+)$1	214	42	46	11.9999
iooo	chr17:79112233-79112545(-)$1	312	20	24	11.9999
mmmb	chr16:58582377-58582584(-)$1	207	26	30	11.9999
b[gg	chr12:7076465-7076669(-)$1	204	114	118	11.9999
G:cc	chr16:3704377-3704637(+)$1	260	43	47	11.9999
^^^^	chr17:7079909-7080200(-)$1	291	210	214	11.9999
:ccc	chr17:79963911-79964118(+)$1	207	3	7	11.9999
eeee	chr20:61591283-61591530(+)$1	247	42	46	11.9999
dddd	chr9:130210777-130211003(-)$1	226	213	217	11.9999
f]a]	chr21:45378900-45379177(+)$1	277	197	201	11.9999
$$ff	chr11:93463646-93463849(-)$1	203	36	40	11.9999
$$ff	chr11:93463672-93463907(-)$1	235	94	98	11.9999
mmmf	chr3:160232672-160232885(-)$1	213	75	79	11.9999

#DB
((..	chr11:8706885-8707087(+)$1	1	186	190	11.9999
((.(	chr1:154232159-154232370(+)$1	1	42	46	11.9999
...)	chr3:160232622-160232849(-)$1	1	39	43	11.9999
))))	chr11:93454867-93455081(+)$1	1	52	56	11.9999
..((	chr11:93463649-93463853(-)$1	1	40	44	11.9999
((((	chr16:70571854-70572089(+)$1	1	158	162	11.9999
((((	chr1:987913-988161(+)$1	1	0	4	11.9999
....	chr14:95999657-95999863(-)$1	1	66	70	11.9999
((((	chr17:37009032-37009237(-)$1	1	10	14	11.9999
...)	chr3:169482515-169482731(-)$1	1	189	193	11.9999
((((	chr17:21109815-21110037(-)$1	1	26	30	11.9999
((..	chr17:27050394-27050605(+)$1	1	51	55	11.9999
.(((	chr12:133107871-133108141(+)$1	1	5	9	11.9999
.)))	chrX:54840743-54840949(+)$1	1	23	27	11.9999
))))	chr14:105338367-105338659(+)$1	1	169	173	11.9999
.)))	chr20:37076628-37076832(+)$1	1	23	27	11.9999
.(((	chr19:12814341-12814585(-)$1	1	10	14	11.9999
).))	chr5:172447719-172447930(+)$1	1	66	70	11.9999
((((	chr11:9450314-9450517(+)$1	1	112	116	11.9999
))))	chr2:234197316-234197518(+)$1	1	107	111	11.9999
.)))	chr5:176516858-176517139(+)$1	1	65	69	11.9999
).))	chr5:172447681-172447894(+)$1	1	104	108	11.9999
.)))	chr22:25855567-25855848(+)$1	1	88	92	11.9999
..((	chr7:6056407-6056613(+)$1	1	103	107	11.9999
))))	chr1:28906884-28907124(-)$1	1	76	80	11.9999
).))	chr5:172447712-172447914(+)$1	1	73	77	11.9999
))))	chr9:130210729-130210938(-)$1	1	148	152	11.9999
((.(	chr3:129113542-129113833(-)$1	1	82	86	11.9999
))))	chr21:43368155-43368495(-)$1	1	47	51	11.9999
....	chr17:7079711-7079975(-)$1	1	127	131	11.9999
))..	chr10:74885766-74885969(-)$1	1	70	74	11.9999
((((	chr7:138268141-138268346(+)$1	1	31	35	11.9999
.(((	chr6:31590831-31591042(+)$1	1	0	4	11.9999
))))	chr6:133138301-133138505(+)$1	1	197	201	11.9999
((((	chr17:27049500-27049711(+)$1	1	67	71	11.9999
)))(	chr17:75496150-75496430(+)$1	1	125	129	11.9999
.(((	chrX:153628573-153628795(+)$1	1	39	43	11.9999
(.(.	chr1:93306243-93306446(+)$1	1	9	13	11.9999
))((	chr14:91592709-91592918(+)$1	1	58	62	11.9999
((((	chr20:37058341-37058547(-)$1	1	76	80	11.9999
..))	chr7:158105069-158105329(-)$1	1	43	47	11.9999
((((	chr3:160232788-160233015(-)$1	1	15	19	11.9999
.(((	chr3:129116083-129116291(-)$1	1	34	38	11.9999
((((	chr11:62432870-62433075(+)$1	1	5	9	11.9999
..((	chr11:9450329-9450534(+)$1	1	97	101	11.9999
((.(	chr22:51149369-51149600(+)$1	1	42	46	11.9999
((((	chr16:30721831-30722039(+)$1	1	6	10	11.9999
))))	chr15:25330584-25330809(+)$1	1	129	133	11.9999
(...	chr7:45144479-45144681(-)$1	1	122	126	11.9999
((((	chr6:31590810-31591019(+)$1	1	1	5	11.9999
))((	chrX:54840773-54840985(+)$1	1	28	32	11.9999
((((	chr17:37009059-37009270(-)$1	1	43	47	11.9999
((.(	chr8:38626569-38626879(+)$1	1	13	17	11.9999
))))	chr9:130210711-130210921(-)$1	1	131	135	11.9999
.((.	chr22:34100678-34100954(-)$1	1	4	8	11.9999
...)	chr3:160232656-160232860(-)$1	1	50	54	11.9999
))))	chr14:20791293-20791496(-)$1	1	49	53	11.9999
((.(	chr17:70550094-70550384(-)$1	1	8	12	11.9999
....	chr17:79963975-79964189(+)$1	1	36	40	11.9999
((.(	chr13:114267828-114268097(+)$1	1	99	103	11.9999
((.(	chr1:48692628-48692874(+)$1	1	51	55	11.9999
((.(	chr14:105338695-105338965(+)$1	1	16	20	11.9999
(..(	chr11:93454836-93455040(+)$1	1	83	87	11.9999
.(((	chr11:62432859-62433065(+)$1	1	16	20	11.9999
..(.	chr18:13445148-13445382(+)$1	1	137	141	11.9999
((..	chr5:138611896-138612102(+)$1	1	27	31	11.9999
..))	chr17:79963843-79964064(+)$1	1	28	32	11.9999
((((	chr6:133136377-133136591(+)$1	1	42	46	11.9999
(...	chr17:79112233-79112545(-)$1	1	20	24	11.9999
...)	chr16:58582377-58582584(-)$1	1	26	30	11.9999
(.((	chr12:7076465-7076669(-)$1	1	114	118	11.9999
(.((	chr16:3704377-3704637(+)$1	1	43	47	11.9999
....	chr17:7079909-7080200(-)$1	1	210	214	11.9999
.(((	chr17:79963911-79964118(+)$1	1	3	7	11.9999
((((	chr20:61591283-61591530(+)$1	1	42	46	11.9999
))))	chr9:130210777-130211003(-)$1	1	213	217	11.9999
).).	chr21:45378900-45379177(+)$1	1	197	201	11.9999
..((	chr11:93463646-93463849(-)$1	1	36	40	11.9999
..((	chr11:93463672-93463907(-)$1	1	94	98	11.9999
...)	chr3:160232672-160232885(-)$1	1	75	79	11.9999

#PSSM
U : 0.74	u : 0.25	
G : 0.74	g : 0.25	
G : 0.77	g : 0.22	
G : 0.77	g : 0.22	

#score	959.9999999999999
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_CDS_m1_run1.nuc.txt

#NT
UCU	chr8:101729942-101730178(-)$1	236	192	195	8.9999
UCU	chr12:123829858-123830136(-)$1	278	10	13	8.9999
UCU	chr15:66792584-66792810(-)$1	226	47	50	8.9999
UCU	chr8:101719014-101719216(-)$1	202	62	65	8.9999
UCU	chr1:198288440-198288723(+)$1	283	13	16	8.9999
UCU	chr11:63519891-63520174(+)$1	283	15	18	8.9999
UCU	chr8:126011699-126011937(+)$1	238	52	55	8.9999
UCU	chr5:10680810-10681150(-)$1	340	18	21	8.9999
UCU	chr1:19501372-19501628(-)$1	256	24	27	8.9999
UCU	chr3:150285640-150285894(+)$1	254	6	9	8.9999
UCU	chr2:97007707-97007979(+)$1	272	12	15	8.9999
UCU	chr2:152311452-152311770(+)$1	318	15	18	8.9999
UCU	chr4:122740436-122740690(-)$1	254	34	37	8.9999
UCU	chr2:26455022-26455247(-)$1	225	22	25	8.9999
UCU	chr8:17132275-17132567(+)$1	292	3	6	8.9999
UCU	chr10:119044450-119044734(-)$1	284	78	81	8.9999
UCU	chr11:5322183-5322444(-)$1	261	101	104	8.9999
UCU	chr5:43294161-43294364(-)$1	203	73	76	8.9999
UCU	chr6:90042702-90042981(-)$1	279	34	37	8.9999
UCU	chr16:24573234-24573499(+)$1	265	26	29	8.9999
UCU	chr16:58559791-58560046(-)$1	255	42	45	8.9999
UCU	chr5:145522333-145522567(-)$1	234	33	36	8.9999
UCU	chr7:86539027-86539310(-)$1	283	7	10	8.9999
UCU	chr11:87029138-87029378(+)$1	240	6	9	8.9999
UCU	chr14:100743762-100744064(+)$1	302	133	136	8.9999
UCU	chr2:177191451-177191723(+)$1	272	90	93	8.9999
UCU	chr6:34212513-34212762(+)$1	249	34	37	8.9999
UCU	chr6:8079981-8080245(-)$1	264	14	17	8.9999
UCU	chr21:33073987-33074231(-)$1	244	26	29	8.9999
UCU	chr22:32894362-32894619(+)$1	257	66	69	8.9999
UCU	chr6:159004885-159005176(+)$1	291	93	96	8.9999
UCU	chr20:61574385-61574637(+)$1	252	14	17	8.9999
UCU	chr4:83748568-83748792(-)$1	224	127	130	8.9999
UCU	chr3:100447552-100447764(+)$1	212	46	49	8.9999
UCU	chr15:83725047-83725366(-)$1	319	21	24	8.9999
UCU	chr12:104327849-104328090(+)$1	241	37	40	8.9999
UCU	chr20:49510841-49511111(-)$1	270	5	8	8.9999
ucu	chr6:17646246-17646472(-)$1	226	12	15	8.9999
UCU	chr15:30010141-30010405(-)$1	264	18	21	8.9999
UCU	chr3:194174351-194174608(-)$1	257	36	39	8.9999
UCU	chr1:161753688-161753984(+)$1	296	22	25	8.9999
UCU	chr3:100467065-100467357(+)$1	292	19	22	8.9999
UCU	chr12:56503540-56503772(+)$1	232	3	6	8.9999
UCU	chr11:95569207-95569468(-)$1	261	10	13	8.9999
UCU	chr2:32695135-32695386(+)$1	251	2	5	8.9999
UCU	chr1:52271080-52271328(-)$1	248	50	53	8.9999
UCU	chr17:30693619-30693855(+)$1	236	49	52	8.9999
UCU	chr1:52227489-52227730(+)$1	241	15	18	8.9999
UCU	chr1:24022734-24023006(+)$1	272	24	27	8.9999
UCU	chr18:34385236-34385487(-)$1	251	61	64	8.9999
UCU	chr11:61571042-61571249(-)$1	207	32	35	8.9999
UCU	chr11:82570919-82571241(-)$1	322	30	33	8.9999
UCU	chr8:101717716-101717918(-)$1	202	0	3	8.9999
UCU	chr22:22843136-22843409(-)$1	273	49	52	8.9999
UCU	chr11:9457717-9457974(+)$1	257	86	89	8.9999
UCU	chr12:120935803-120936038(+)$1	235	29	32	8.9999
UCU	chr19:38872746-38872968(+)$1	222	78	81	8.9999
UCU	chr1:222905931-222906234(+)$1	303	29	32	8.9999
UCU	chr11:33374798-33375075(+)$1	277	18	21	8.9999
UCU	chr15:59399653-59399962(+)$1	309	36	39	8.9999
UCU	chr1:154228058-154228302(+)$1	244	12	15	8.9999
UCU	chr15:80414941-80415178(+)$1	237	7	10	8.9999
UCU	chr2:169707531-169707793(+)$1	262	35	38	8.9999
UCU	chr4:83763470-83763735(-)$1	265	11	14	8.9999
UCU	chr1:171553109-171553400(+)$1	291	25	28	8.9999
UCU	chr3:183960202-183960499(-)$1	297	23	26	8.9999
UCU	chr16:69725621-69725928(+)$1	307	39	42	8.9999
UCU	chr18:55230096-55230313(-)$1	217	40	43	8.9999
UCU	chr11:118376560-118376833(+)$1	273	43	46	8.9999
UCU	chr3:194174885-194175109(-)$1	224	62	65	8.9999
UCU	chr22:38259177-38259438(+)$1	261	35	38	8.9999
UCU	chr8:61654827-61655158(+)$1	331	43	46	8.9999
UCU	chr3:33171419-33171655(+)$1	236	27	30	8.9999
UCU	chr17:49371219-49371501(+)$1	282	34	37	8.9999
UCU	chr11:63520440-63520679(+)$1	239	107	110	8.9999
UCU	chr11:118376083-118376356(+)$1	273	1	4	8.9999
UCU	chr1:247320343-247320628(-)$1	285	17	20	8.9999
UCU	chr4:100869867-100870143(-)$1	276	34	37	8.9999
UCU	chr9:110087059-110087339(+)$1	280	31	34	8.9999
UCU	chr6:43480401-43480659(-)$1	258	25	28	8.9999
UCU	chr6:17647951-17648195(-)$1	244	12	15	8.9999
UCU	chr17:58300672-58301048(-)$1	376	78	81	8.9999
ucu	chr2:136437642-136437911(+)$1	269	3	6	8.9999
UCU	chr1:115260617-115260908(-)$1	291	57	60	8.9999
UCU	chr15:66795391-66795599(-)$1	208	0	3	8.9999
UCU	chr22:38247209-38247471(+)$1	262	8	11	8.9999
UCU	chr8:145066872-145067114(+)$1	242	93	96	8.9999
UCU	chr4:77976204-77976422(-)$1	218	11	14	8.9999
UCU	chr17:34001135-34001391(+)$1	256	21	24	8.9999
UCU	chr2:178096495-178096747(-)$1	252	1	4	8.9999
UCU	chr1:202914010-202914223(-)$1	213	22	25	8.9999
UCU	chr2:128767792-128768067(-)$1	275	8	11	8.9999
UCU	chr5:95124365-95124663(+)$1	298	9	12	8.9999
UCU	chr2:136418811-136419065(+)$1	254	94	97	8.9999
UCU	chr1:47746689-47746944(-)$1	255	18	21	8.9999
UCU	chr13:41507879-41508147(-)$1	268	20	23	8.9999
UCU	chr9:114986386-114986590(-)$1	204	15	18	8.9999
UCU	chr12:57108345-57108571(-)$1	226	19	22	8.9999

#otherMatches

#Struct PSSM
%%%	chr18:9954055-9954329(+)$1	274	83	86	8.9999
qqe	chr8:101729942-101730178(-)$1	236	192	195	8.9999
qqq	chr12:123829858-123830136(-)$1	278	10	13	8.9999
III	chr15:66792584-66792810(-)$1	226	47	50	8.9999
888	chr8:101719014-101719216(-)$1	202	62	65	8.9999
PPP	chr1:198288440-198288723(+)$1	283	13	16	8.9999
:FF	chr11:63519891-63520174(+)$1	283	15	18	8.9999
EEE	chr8:126011699-126011937(+)$1	238	52	55	8.9999
ddd	chr5:10680810-10681150(-)$1	340	18	21	8.9999
eee	chr1:19501372-19501628(-)$1	256	24	27	8.9999
III	chr3:150285640-150285894(+)$1	254	6	9	8.9999
ggg	chr2:97007707-97007979(+)$1	272	12	15	8.9999
ggg	chr2:152311452-152311770(+)$1	318	15	18	8.9999
ccc	chr4:122740436-122740690(-)$1	254	34	37	8.9999
:::	chr2:26455022-26455247(-)$1	225	22	25	8.9999
fff	chr8:17132275-17132567(+)$1	292	3	6	8.9999
>>>	chr10:119044450-119044734(-)$1	284	78	81	8.9999
fff	chr11:5322183-5322444(-)$1	261	101	104	8.9999
"""	chr5:43294161-43294364(-)$1	203	73	76	8.9999
e!!	chr6:90042702-90042981(-)$1	279	34	37	8.9999
ggg	chr16:24573234-24573499(+)$1	265	26	29	8.9999
888	chr16:58559791-58560046(-)$1	255	42	45	8.9999
xxx	chr5:145522333-145522567(-)$1	234	33	36	8.9999
dcc	chr7:86539027-86539310(-)$1	283	7	10	8.9999
FFC	chr11:87029138-87029378(+)$1	240	6	9	8.9999
3a2	chr14:100743762-100744064(+)$1	302	133	136	8.9999
eee	chr2:177191451-177191723(+)$1	272	90	93	8.9999
cll	chr6:34212513-34212762(+)$1	249	34	37	8.9999
dmm	chr6:8079981-8080245(-)$1	264	14	17	8.9999
ccm	chr21:33073987-33074231(-)$1	244	26	29	8.9999
777	chr22:32894362-32894619(+)$1	257	66	69	8.9999
ggb	chr6:159004885-159005176(+)$1	291	93	96	8.9999
bb:	chr20:61574385-61574637(+)$1	252	14	17	8.9999
+++	chr4:83748568-83748792(-)$1	224	127	130	8.9999
ddd	chr3:100447552-100447764(+)$1	212	46	49	8.9999
ooc	chr15:83725047-83725366(-)$1	319	21	24	8.9999
qqq	chr12:104327849-104328090(+)$1	241	37	40	8.9999
FLL	chr20:49510841-49511111(-)$1	270	5	8	8.9999
ccc	chr6:17646246-17646472(-)$1	226	12	15	8.9999
!!b	chr15:30010141-30010405(-)$1	264	18	21	8.9999
ooo	chr3:194174351-194174608(-)$1	257	36	39	8.9999
[bb	chr1:161753688-161753984(+)$1	296	22	25	8.9999
OOO	chr3:100467065-100467357(+)$1	292	19	22	8.9999
DDD	chr12:56503540-56503772(+)$1	232	3	6	8.9999
HHH	chr11:95569207-95569468(-)$1	261	10	13	8.9999
GGG	chr2:32695135-32695386(+)$1	251	2	5	8.9999
ggg	chr1:52271080-52271328(-)$1	248	50	53	8.9999
>>>	chr17:30693619-30693855(+)$1	236	49	52	8.9999
EEE	chr1:52227489-52227730(+)$1	241	15	18	8.9999
:::	chr1:24022734-24023006(+)$1	272	24	27	8.9999
::c	chr18:34385236-34385487(-)$1	251	61	64	8.9999
ttt	chr11:61571042-61571249(-)$1	207	32	35	8.9999
HH{	chr11:82570919-82571241(-)$1	322	30	33	8.9999
ccc	chr8:101717716-101717918(-)$1	202	0	3	8.9999
DDD	chr22:22843136-22843409(-)$1	273	49	52	8.9999
hhh	chr11:9457717-9457974(+)$1	257	86	89	8.9999
eee	chr12:120935803-120936038(+)$1	235	29	32	8.9999
FFF	chr19:38872746-38872968(+)$1	222	78	81	8.9999
ccc	chr1:222905931-222906234(+)$1	303	29	32	8.9999
e^^	chr11:33374798-33375075(+)$1	277	18	21	8.9999
ggg	chr15:59399653-59399962(+)$1	309	36	39	8.9999
:::	chr1:154228058-154228302(+)$1	244	12	15	8.9999
eee	chr15:80414941-80415178(+)$1	237	7	10	8.9999
ddd	chr2:169707531-169707793(+)$1	262	35	38	8.9999
::E	chr4:83763470-83763735(-)$1	265	11	14	8.9999
III	chr1:171553109-171553400(+)$1	291	25	28	8.9999
ttt	chr3:183960202-183960499(-)$1	297	23	26	8.9999
eee	chr16:69725621-69725928(+)$1	307	39	42	8.9999
c[c	chr18:55230096-55230313(-)$1	217	40	43	8.9999
]bb	chr11:118376560-118376833(+)$1	273	43	46	8.9999
###	chr3:194174885-194175109(-)$1	224	62	65	8.9999
:GG	chr22:38259177-38259438(+)$1	261	35	38	8.9999
E::	chr8:61654827-61655158(+)$1	331	43	46	8.9999
fff	chr3:33171419-33171655(+)$1	236	27	30	8.9999
c##	chr17:49371219-49371501(+)$1	282	34	37	8.9999
ddc	chr11:63520440-63520679(+)$1	239	107	110	8.9999
:::	chr11:118376083-118376356(+)$1	273	1	4	8.9999
fff	chr1:247320343-247320628(-)$1	285	17	20	8.9999
::g	chr4:100869867-100870143(-)$1	276	34	37	8.9999
EEE	chr9:110087059-110087339(+)$1	280	31	34	8.9999
EEE	chr6:43480401-43480659(-)$1	258	25	28	8.9999
iii	chr6:17647951-17648195(-)$1	244	12	15	8.9999
qqq	chr17:58300672-58301048(-)$1	376	78	81	8.9999
:DD	chr2:136437642-136437911(+)$1	269	3	6	8.9999
===	chr1:115260617-115260908(-)$1	291	57	60	8.9999
:::	chr15:66795391-66795599(-)$1	208	0	3	8.9999
hll	chr22:38247209-38247471(+)$1	262	8	11	8.9999
ddd	chr8:145066872-145067114(+)$1	242	93	96	8.9999
ddd	chr4:77976204-77976422(-)$1	218	11	14	8.9999
lle	chr17:34001135-34001391(+)$1	256	21	24	8.9999
eee	chr2:178096495-178096747(-)$1	252	1	4	8.9999
III	chr1:202914010-202914223(-)$1	213	22	25	8.9999
FFF	chr2:128767792-128768067(-)$1	275	8	11	8.9999
nnn	chr5:95124365-95124663(+)$1	298	9	12	8.9999
occ	chr2:136418811-136419065(+)$1	254	94	97	8.9999
GGG	chr1:47746689-47746944(-)$1	255	18	21	8.9999
PPP	chr13:41507879-41508147(-)$1	268	20	23	8.9999
NNN	chr9:114986386-114986590(-)$1	204	15	18	8.9999
!!e	chr12:57108345-57108571(-)$1	226	19	22	8.9999

#DB
...	chr18:9954055-9954329(+)$1	1	83	86	8.9999
..)	chr8:101729942-101730178(-)$1	1	192	195	8.9999
...	chr12:123829858-123830136(-)$1	1	10	13	8.9999
(((	chr15:66792584-66792810(-)$1	1	47	50	8.9999
...	chr8:101719014-101719216(-)$1	1	62	65	8.9999
...	chr1:198288440-198288723(+)$1	1	13	16	8.9999
.((	chr11:63519891-63520174(+)$1	1	15	18	8.9999
(((	chr8:126011699-126011937(+)$1	1	52	55	8.9999
(((	chr5:10680810-10681150(-)$1	1	18	21	8.9999
(((	chr1:19501372-19501628(-)$1	1	24	27	8.9999
(((	chr3:150285640-150285894(+)$1	1	6	9	8.9999
(((	chr2:97007707-97007979(+)$1	1	12	15	8.9999
(((	chr2:152311452-152311770(+)$1	1	15	18	8.9999
(((	chr4:122740436-122740690(-)$1	1	34	37	8.9999
...	chr2:26455022-26455247(-)$1	1	22	25	8.9999
(((	chr8:17132275-17132567(+)$1	1	3	6	8.9999
...	chr10:119044450-119044734(-)$1	1	78	81	8.9999
)))	chr11:5322183-5322444(-)$1	1	101	104	8.9999
...	chr5:43294161-43294364(-)$1	1	73	76	8.9999
(..	chr6:90042702-90042981(-)$1	1	34	37	8.9999
)))	chr16:24573234-24573499(+)$1	1	26	29	8.9999
...	chr16:58559791-58560046(-)$1	1	42	45	8.9999
...	chr5:145522333-145522567(-)$1	1	33	36	8.9999
(((	chr7:86539027-86539310(-)$1	1	7	10	8.9999
(((	chr11:87029138-87029378(+)$1	1	6	9	8.9999
.).	chr14:100743762-100744064(+)$1	1	133	136	8.9999
(((	chr2:177191451-177191723(+)$1	1	90	93	8.9999
(..	chr6:34212513-34212762(+)$1	1	34	37	8.9999
(..	chr6:8079981-8080245(-)$1	1	14	17	8.9999
((.	chr21:33073987-33074231(-)$1	1	26	29	8.9999
...	chr22:32894362-32894619(+)$1	1	66	69	8.9999
)))	chr6:159004885-159005176(+)$1	1	93	96	8.9999
)).	chr20:61574385-61574637(+)$1	1	14	17	8.9999
...	chr4:83748568-83748792(-)$1	1	127	130	8.9999
(((	chr3:100447552-100447764(+)$1	1	46	49	8.9999
..)	chr15:83725047-83725366(-)$1	1	21	24	8.9999
...	chr12:104327849-104328090(+)$1	1	37	40	8.9999
(..	chr20:49510841-49511111(-)$1	1	5	8	8.9999
(((	chr6:17646246-17646472(-)$1	1	12	15	8.9999
..(	chr15:30010141-30010405(-)$1	1	18	21	8.9999
...	chr3:194174351-194174608(-)$1	1	36	39	8.9999
.((	chr1:161753688-161753984(+)$1	1	22	25	8.9999
...	chr3:100467065-100467357(+)$1	1	19	22	8.9999
(((	chr12:56503540-56503772(+)$1	1	3	6	8.9999
(((	chr11:95569207-95569468(-)$1	1	10	13	8.9999
(((	chr2:32695135-32695386(+)$1	1	2	5	8.9999
)))	chr1:52271080-52271328(-)$1	1	50	53	8.9999
...	chr17:30693619-30693855(+)$1	1	49	52	8.9999
(((	chr1:52227489-52227730(+)$1	1	15	18	8.9999
...	chr1:24022734-24023006(+)$1	1	24	27	8.9999
..(	chr18:34385236-34385487(-)$1	1	61	64	8.9999
...	chr11:61571042-61571249(-)$1	1	32	35	8.9999
((.	chr11:82570919-82571241(-)$1	1	30	33	8.9999
(((	chr8:101717716-101717918(-)$1	1	0	3	8.9999
(((	chr22:22843136-22843409(-)$1	1	49	52	8.9999
)))	chr11:9457717-9457974(+)$1	1	86	89	8.9999
)))	chr12:120935803-120936038(+)$1	1	29	32	8.9999
(((	chr19:38872746-38872968(+)$1	1	78	81	8.9999
(((	chr1:222905931-222906234(+)$1	1	29	32	8.9999
(..	chr11:33374798-33375075(+)$1	1	18	21	8.9999
)))	chr15:59399653-59399962(+)$1	1	36	39	8.9999
...	chr1:154228058-154228302(+)$1	1	12	15	8.9999
(((	chr15:80414941-80415178(+)$1	1	7	10	8.9999
(((	chr2:169707531-169707793(+)$1	1	35	38	8.9999
..(	chr4:83763470-83763735(-)$1	1	11	14	8.9999
(((	chr1:171553109-171553400(+)$1	1	25	28	8.9999
...	chr3:183960202-183960499(-)$1	1	23	26	8.9999
)))	chr16:69725621-69725928(+)$1	1	39	42	8.9999
(.(	chr18:55230096-55230313(-)$1	1	40	43	8.9999
.))	chr11:118376560-118376833(+)$1	1	43	46	8.9999
...	chr3:194174885-194175109(-)$1	1	62	65	8.9999
.((	chr22:38259177-38259438(+)$1	1	35	38	8.9999
(..	chr8:61654827-61655158(+)$1	1	43	46	8.9999
)))	chr3:33171419-33171655(+)$1	1	27	30	8.9999
(..	chr17:49371219-49371501(+)$1	1	34	37	8.9999
)))	chr11:63520440-63520679(+)$1	1	107	110	8.9999
...	chr11:118376083-118376356(+)$1	1	1	4	8.9999
)))	chr1:247320343-247320628(-)$1	1	17	20	8.9999
..(	chr4:100869867-100870143(-)$1	1	34	37	8.9999
(((	chr9:110087059-110087339(+)$1	1	31	34	8.9999
(((	chr6:43480401-43480659(-)$1	1	25	28	8.9999
(((	chr6:17647951-17648195(-)$1	1	12	15	8.9999
...	chr17:58300672-58301048(-)$1	1	78	81	8.9999
.((	chr2:136437642-136437911(+)$1	1	3	6	8.9999
(((	chr1:115260617-115260908(-)$1	1	57	60	8.9999
...	chr15:66795391-66795599(-)$1	1	0	3	8.9999
(..	chr22:38247209-38247471(+)$1	1	8	11	8.9999
)))	chr8:145066872-145067114(+)$1	1	93	96	8.9999
(((	chr4:77976204-77976422(-)$1	1	11	14	8.9999
..)	chr17:34001135-34001391(+)$1	1	21	24	8.9999
(((	chr2:178096495-178096747(-)$1	1	1	4	8.9999
(((	chr1:202914010-202914223(-)$1	1	22	25	8.9999
(((	chr2:128767792-128768067(-)$1	1	8	11	8.9999
...	chr5:95124365-95124663(+)$1	1	9	12	8.9999
.))	chr2:136418811-136419065(+)$1	1	94	97	8.9999
(((	chr1:47746689-47746944(-)$1	1	18	21	8.9999
...	chr13:41507879-41508147(-)$1	1	20	23	8.9999
...	chr9:114986386-114986590(-)$1	1	15	18	8.9999
..(	chr12:57108345-57108571(-)$1	1	19	22	8.9999

#PSSM
U : 0.97	u : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_CDS_m3_run2.nuc.txt

#NT
ACUGUAUAAUUUUGGAAUAGAAAUAGUAAAUGUGUCAUUCAUUGUAUGCUCUUGCAGGGUUAUGUGGUCCGAAUCAGUGGUGGGAACGACAAACAAGGUUUCCCCAUGAAGCAGGGUGUCUUGACC	chr9:19378798-19379017(-)$1	219	44	170	378.0000
ACUGUAUAAUUUUGGAAUAGAAAUAGUAAAUGUGUCAUUCAUUGUAUGCUCUUGCAGGGUUAUGUGGUCCGAAUCAGUGGUGGGAACGACAAACAAGGUUUCCCCAUGAAGCAGGGUGUCUUGACC	chr9:19378759-19378973(-)$1	214	0	126	378.0000

#otherMatches

#Struct PSSM
h!!eeeee%%%%%%dddd[bb[cccnnnnnccc]bbdddd4444eeeee333hhhhhhhh22eeeee]bb:::JJJJJJJJJJJLLLDDDDKKBB::eeeeennnnneeeee:ddddooooooddd	chr9:19378781-19378998(-)$1	217	25	151	378.0000
h!!eeeee%%%%%%dddd[bb[cccnnnnnccc]bbdddd4444eeeee333hhhhhhhh22eeeee]bb:::JJJJJJJJJJJLLLDDDDKKBB::eeeeennnnneeeee:ddddooooooddd	chr9:19378798-19379017(-)$1	219	44	170	378.0000
::::==========[bb[bba[eeeee[ddddllldddd]eeeee]a]bb]bb]==========EEEEE::::JJJJJJJJJJJLLLDDDDKKBB::eeeeennnnneeeee:ddddooooooddd	chr9:19378759-19378973(-)$1	214	0	126	378.0000

#DB
(..(((((......((((.((.(((.....))).))))))....)))))...))))))))..))))).))...(((((((((((...((((..((..(((((.....))))).((((......)))	chr9:19378781-19378998(-)$1	1	25	151	378.0000
(..(((((......((((.((.(((.....))).))))))....)))))...))))))))..))))).))...(((((((((((...((((..((..(((((.....))))).((((......)))	chr9:19378798-19379017(-)$1	1	44	170	378.0000
....((((((((((.((.(((.(((((.((((...)))).))))).).)).)).))))))))))(((((....(((((((((((...((((..((..(((((.....))))).((((......)))	chr9:19378759-19378973(-)$1	1	0	126	378.0000

#PSSM
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	

#score	1134.0
#seq	3
#width	126
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_CDS_m3_run2.nuc.txt

#NT
ACC	chr16:1821310-1821567(-)$1	257	23	26	8.9999
ACC	chr13:47127534-47127781(+)$1	247	17	20	8.9999
ACC	chr22:20074087-20074313(+)$1	226	158	161	8.9999
acc	chrX:48814630-48814848(-)$1	218	59	62	8.9999
ACC	chr17:8108202-8108422(-)$1	220	52	55	8.9999
ACC	chr22:20073731-20073977(+)$1	246	17	20	8.9999
ACC	chr19:917326-917630(+)$1	304	42	45	8.9999
ACC	chr9:101558279-101558523(-)$1	244	22	25	8.9999
ACC	chr9:139564582-139564827(+)$1	245	22	25	8.9999
ACC	chr12:62996652-62996879(+)$1	227	39	42	8.9999
ACC	chr19:46522399-46522676(+)$1	277	200	203	8.9999
ACC	chr19:44096570-44096858(-)$1	288	197	200	8.9999
ACC	chr17:8108163-8108386(-)$1	223	16	19	8.9999
ACC	chr17:38559070-38559332(-)$1	262	41	44	8.9999
ACC	chr9:101558619-101558833(-)$1	214	112	115	8.9999
ACC	chr14:101350980-101351207(+)$1	227	214	217	8.9999
ACC	chr22:20073378-20073640(+)$1	262	215	218	8.9999
ACC	chr22:20073516-20073723(+)$1	207	77	80	8.9999
ACC	chr7:99954177-99954422(+)$1	245	29	32	8.9999
acc	chrX:48814596-48814806(-)$1	210	17	20	8.9999
ACC	chr5:154135498-154135746(+)$1	248	20	23	8.9999
ACC	chr9:101558488-101558740(-)$1	252	19	22	8.9999
ACC	chr22:20073619-20073849(+)$1	230	60	63	8.9999
ACC	chr9:101558577-101558792(-)$1	215	71	74	8.9999
ACC	chr10:70481264-70481493(+)$1	229	80	83	8.9999
ACC	chr19:18111975-18112272(+)$1	297	1	4	8.9999
ACC	chr22:20073835-20074067(+)$1	232	23	26	8.9999
ACC	chr19:46142015-46142254(-)$1	239	29	32	8.9999
ACC	chr22:20073440-20073661(+)$1	221	153	156	8.9999
ACC	chr17:46655280-46655515(-)$1	235	14	17	8.9999
acc	chr5:31515522-31515791(-)$1	269	147	150	8.9999
ACC	chr5:179046277-179046530(-)$1	253	7	10	8.9999
ACC	chr19:813520-813749(+)$1	229	94	97	8.9999
ACC	chr22:20073532-20073758(+)$1	226	61	64	8.9999
ACC	chr19:18112190-18112456(+)$1	266	92	95	8.9999
ACC	chr9:101558651-101558910(-)$1	259	189	192	8.9999
ACC	chr7:150935266-150935514(+)$1	248	74	77	8.9999
ACC	chr17:80211014-80211280(-)$1	266	42	45	8.9999
ACC	chr3:49055857-49056129(-)$1	272	19	22	8.9999
ACC	chr9:139563966-139564209(+)$1	243	78	81	8.9999
ACC	chr12:62996797-62997070(+)$1	273	146	149	8.9999
ACC	chr19:917492-917733(+)$1	241	16	19	8.9999
ACC	chr22:20073654-20073903(+)$1	249	25	28	8.9999
ACC	chr17:30800858-30801064(+)$1	206	113	116	8.9999
ACC	chr17:30801680-30801883(+)$1	203	43	46	8.9999
ACC	chr1:248020672-248020920(+)$1	248	90	93	8.9999
ACC	chr9:139565244-139565522(+)$1	278	8	11	8.9999
ACC	chr17:30800846-30801058(+)$1	212	125	128	8.9999
ACC	chrX:48814285-48814537(-)$1	252	4	7	8.9999
ACC	chr9:101558592-101558800(-)$1	208	79	82	8.9999
ACC	chr2:242707056-242707337(+)$1	281	44	47	8.9999
ACC	chrX:48814219-48814460(-)$1	241	202	205	8.9999
ACC	chr22:20073523-20073732(+)$1	209	70	73	8.9999
ACC	chr22:20073593-20073819(+)$1	226	0	3	8.9999
ACC	chr9:101558633-101558849(-)$1	216	128	131	8.9999
ACC	chr7:150935432-150935656(+)$1	224	9	12	8.9999
ACC	chr12:69135560-69135827(+)$1	267	45	48	8.9999
ACC	chr9:101558600-101558819(-)$1	219	98	101	8.9999
ACC	chr22:20073993-20074254(+)$1	261	252	255	8.9999
ACC	chr7:99954222-99954445(+)$1	223	38	41	8.9999
ACC	chr19:40741696-40741934(-)$1	238	17	20	8.9999
ACC	chr10:70481250-70481464(+)$1	214	94	97	8.9999
ACC	chr17:33968795-33969030(+)$1	235	26	29	8.9999
ACC	chr7:150935484-150935694(+)$1	210	107	110	8.9999
ACC	chr10:70287015-70287285(-)$1	270	76	79	8.9999
ACC	chr15:65578581-65578821(-)$1	240	19	22	8.9999
ACC	chr1:151238392-151238639(+)$1	247	13	16	8.9999
ACC	chr12:62996887-62997129(+)$1	242	56	59	8.9999
ACC	chr19:18112274-18112507(+)$1	233	8	11	8.9999
ACC	chr19:917430-917681(+)$1	251	78	81	8.9999
ACC	chr12:62996679-62996961(+)$1	282	12	15	8.9999
ACC	chr22:19951529-19951773(+)$1	244	11	14	8.9999
ACC	chr14:105267569-105267823(+)$1	254	43	46	8.9999
ACC	chr22:20073462-20073716(+)$1	254	131	134	8.9999
ACC	chr7:150935651-150935924(+)$1	273	21	24	8.9999
ACC	chr8:41513164-41513391(-)$1	227	125	128	8.9999
ACC	chr9:139564643-139564880(+)$1	237	30	33	8.9999
ACC	chr22:20074054-20074287(+)$1	233	191	194	8.9999
ACC	chr7:150935456-150935682(+)$1	226	27	30	8.9999
ACC	chr17:30801683-30801914(+)$1	231	40	43	8.9999
ACC	chr16:28877662-28877918(+)$1	256	19	22	8.9999
ACC	chr17:8108125-8108363(-)$1	238	5	8	8.9999
ACC	chr3:49055793-49056057(-)$1	264	14	17	8.9999
ACC	chr22:21983337-21983582(-)$1	245	89	92	8.9999
ACC	chr22:46505757-46506000(+)$1	243	25	28	8.9999
ACC	chr9:140006577-140006827(-)$1	250	24	27	8.9999
ACC	chrX:53581764-53582010(-)$1	246	101	104	8.9999
ACC	chr9:101558397-101558688(-)$1	291	152	155	8.9999
ACC	chr19:2270306-2270559(+)$1	253	94	97	8.9999
ACC	chr9:139564522-139564782(+)$1	260	54	57	8.9999
ACC	chr9:139564511-139564722(+)$1	211	65	68	8.9999
ACC	chr9:139564680-139564892(+)$1	212	93	96	8.9999
ACC	chr9:139564627-139564843(+)$1	216	46	49	8.9999
ACC	chr3:49050262-49050495(+)$1	233	114	117	8.9999
ACC	chr7:150935497-150935708(+)$1	211	94	97	8.9999
ACC	chr22:20073777-20074035(+)$1	258	0	3	8.9999
ACC	chr7:150935513-150935736(+)$1	223	78	81	8.9999
acc	chrX:48814606-48814830(-)$1	224	41	44	8.9999

#otherMatches

#Struct PSSM
ccc	chr12:62997009-62997281(+)$1	272	74	77	8.9999
fff	chr16:1821310-1821567(-)$1	257	23	26	8.9999
err	chr13:47127534-47127781(+)$1	247	17	20	8.9999
!ff	chr22:20074087-20074313(+)$1	226	158	161	8.9999
:cc	chrX:48814630-48814848(-)$1	218	59	62	8.9999
+cc	chr17:8108202-8108422(-)$1	220	52	55	8.9999
qqq	chr22:20073731-20073977(+)$1	246	17	20	8.9999
888	chr19:917326-917630(+)$1	304	42	45	8.9999
eee	chr9:101558279-101558523(-)$1	244	22	25	8.9999
MMH	chr9:139564582-139564827(+)$1	245	22	25	8.9999
D==	chr12:62996652-62996879(+)$1	227	39	42	8.9999
ddf	chr19:46522399-46522676(+)$1	277	200	203	8.9999
]==	chr19:44096570-44096858(-)$1	288	197	200	8.9999
EEE	chr17:8108163-8108386(-)$1	223	16	19	8.9999
fll	chr17:38559070-38559332(-)$1	262	41	44	8.9999
!bb	chr9:101558619-101558833(-)$1	214	112	115	8.9999
ccc	chr14:101350980-101351207(+)$1	227	214	217	8.9999
G\\	chr22:20073378-20073640(+)$1	262	215	218	8.9999
d[d	chr22:20073516-20073723(+)$1	207	77	80	8.9999
[dd	chr7:99954177-99954422(+)$1	245	29	32	8.9999
[cc	chrX:48814596-48814806(-)$1	210	17	20	8.9999
:ii	chr5:154135498-154135746(+)$1	248	20	23	8.9999
!bb	chr9:101558488-101558740(-)$1	252	19	22	8.9999
F::	chr22:20073619-20073849(+)$1	230	60	63	8.9999
!bb	chr9:101558577-101558792(-)$1	215	71	74	8.9999
#cc	chr10:70481264-70481493(+)$1	229	80	83	8.9999
:CC	chr19:18111975-18112272(+)$1	297	1	4	8.9999
mmm	chr22:20073835-20074067(+)$1	232	23	26	8.9999
#bb	chr19:46142015-46142254(-)$1	239	29	32	8.9999
G:d	chr22:20073440-20073661(+)$1	221	153	156	8.9999
E::	chr17:46655280-46655515(-)$1	235	14	17	8.9999
fff	chr5:31515522-31515791(-)$1	269	147	150	8.9999
!!b	chr5:179046277-179046530(-)$1	253	7	10	8.9999
uuu	chr19:813520-813749(+)$1	229	94	97	8.9999
ggg	chr22:20073532-20073758(+)$1	226	61	64	8.9999
!!c	chr19:18112190-18112456(+)$1	266	92	95	8.9999
!bb	chr9:101558651-101558910(-)$1	259	189	192	8.9999
mmm	chr7:150935266-150935514(+)$1	248	74	77	8.9999
ee#	chr17:80211014-80211280(-)$1	266	42	45	8.9999
:ee	chr3:49055857-49056129(-)$1	272	19	22	8.9999
DDL	chr9:139563966-139564209(+)$1	243	78	81	8.9999
!!c	chr12:62996797-62997070(+)$1	273	146	149	8.9999
nng	chr19:917492-917733(+)$1	241	16	19	8.9999
mmm	chr22:20073654-20073903(+)$1	249	25	28	8.9999
:::	chr17:30800858-30801064(+)$1	206	113	116	8.9999
>>>	chr17:30801680-30801883(+)$1	203	43	46	8.9999
ggg	chr1:248020672-248020920(+)$1	248	90	93	8.9999
MEE	chr9:139565244-139565522(+)$1	278	8	11	8.9999
ee2	chr17:30800846-30801058(+)$1	212	125	128	8.9999
BBA	chrX:48814285-48814537(-)$1	252	4	7	8.9999
!bb	chr9:101558592-101558800(-)$1	208	79	82	8.9999
{CC	chr2:242707056-242707337(+)$1	281	44	47	8.9999
5gg	chrX:48814219-48814460(-)$1	241	202	205	8.9999
ggg	chr22:20073523-20073732(+)$1	209	70	73	8.9999
::d	chr22:20073593-20073819(+)$1	226	0	3	8.9999
!bb	chr9:101558633-101558849(-)$1	216	128	131	8.9999
FFF	chr7:150935432-150935656(+)$1	224	9	12	8.9999
ggg	chr12:69135560-69135827(+)$1	267	45	48	8.9999
!bb	chr9:101558600-101558819(-)$1	219	98	101	8.9999
~CC	chr22:20073993-20074254(+)$1	261	252	255	8.9999
""b	chr7:99954222-99954445(+)$1	223	38	41	8.9999
MEE	chr19:40741696-40741934(-)$1	238	17	20	8.9999
#cc	chr10:70481250-70481464(+)$1	214	94	97	8.9999
pbb	chr17:33968795-33969030(+)$1	235	26	29	8.9999
]hh	chr7:150935484-150935694(+)$1	210	107	110	8.9999
d!!	chr10:70287015-70287285(-)$1	270	76	79	8.9999
##b	chr15:65578581-65578821(-)$1	240	19	22	8.9999
B{D	chr1:151238392-151238639(+)$1	247	13	16	8.9999
!!c	chr12:62996887-62997129(+)$1	242	56	59	8.9999
EEE	chr19:18112274-18112507(+)$1	233	8	11	8.9999
nng	chr19:917430-917681(+)$1	251	78	81	8.9999
III	chr12:62996679-62996961(+)$1	282	12	15	8.9999
ddd	chr22:19951529-19951773(+)$1	244	11	14	8.9999
{DD	chr14:105267569-105267823(+)$1	254	43	46	8.9999
ggg	chr22:20073462-20073716(+)$1	254	131	134	8.9999
EEE	chr7:150935651-150935924(+)$1	273	21	24	8.9999
d::	chr8:41513164-41513391(-)$1	227	125	128	8.9999
fff	chr9:139564643-139564880(+)$1	237	30	33	8.9999
!ff	chr22:20074054-20074287(+)$1	233	191	194	8.9999
fff	chr7:150935456-150935682(+)$1	226	27	30	8.9999
::d	chr17:30801683-30801914(+)$1	231	40	43	8.9999
"""	chr16:28877662-28877918(+)$1	256	19	22	8.9999
d$$	chr17:8108125-8108363(-)$1	238	5	8	8.9999
::E	chr3:49055793-49056057(-)$1	264	14	17	8.9999
ccc	chr22:21983337-21983582(-)$1	245	89	92	8.9999
bgg	chr22:46505757-46506000(+)$1	243	25	28	8.9999
dqq	chr9:140006577-140006827(-)$1	250	24	27	8.9999
fff	chrX:53581764-53582010(-)$1	246	101	104	8.9999
boo	chr9:101558397-101558688(-)$1	291	152	155	8.9999
ccd	chr19:2270306-2270559(+)$1	253	94	97	8.9999
!gg	chr9:139564522-139564782(+)$1	260	54	57	8.9999
{HH	chr9:139564511-139564722(+)$1	211	65	68	8.9999
::c	chr9:139564680-139564892(+)$1	212	93	96	8.9999
fff	chr9:139564627-139564843(+)$1	216	46	49	8.9999
GGc	chr3:49050262-49050495(+)$1	233	114	117	8.9999
]hh	chr7:150935497-150935708(+)$1	211	94	97	8.9999
:CC	chr22:20073777-20074035(+)$1	258	0	3	8.9999
]hh	chr7:150935513-150935736(+)$1	223	78	81	8.9999
+++	chrX:48814606-48814830(-)$1	224	41	44	8.9999

#DB
(((	chr12:62997009-62997281(+)$1	1	74	77	8.9999
(((	chr16:1821310-1821567(-)$1	1	23	26	8.9999
(..	chr13:47127534-47127781(+)$1	1	17	20	8.9999
.((	chr22:20074087-20074313(+)$1	1	158	161	8.9999
.((	chrX:48814630-48814848(-)$1	1	59	62	8.9999
.((	chr17:8108202-8108422(-)$1	1	52	55	8.9999
...	chr22:20073731-20073977(+)$1	1	17	20	8.9999
...	chr19:917326-917630(+)$1	1	42	45	8.9999
(((	chr9:101558279-101558523(-)$1	1	22	25	8.9999
..(	chr9:139564582-139564827(+)$1	1	22	25	8.9999
(((	chr12:62996652-62996879(+)$1	1	39	42	8.9999
))(	chr19:46522399-46522676(+)$1	1	200	203	8.9999
.))	chr19:44096570-44096858(-)$1	1	197	200	8.9999
(((	chr17:8108163-8108386(-)$1	1	16	19	8.9999
(..	chr17:38559070-38559332(-)$1	1	41	44	8.9999
.((	chr9:101558619-101558833(-)$1	1	112	115	8.9999
)))	chr14:101350980-101351207(+)$1	1	214	217	8.9999
)..	chr22:20073378-20073640(+)$1	1	215	218	8.9999
(.(	chr22:20073516-20073723(+)$1	1	77	80	8.9999
.((	chr7:99954177-99954422(+)$1	1	29	32	8.9999
.((	chrX:48814596-48814806(-)$1	1	17	20	8.9999
.((	chr5:154135498-154135746(+)$1	1	20	23	8.9999
.((	chr9:101558488-101558740(-)$1	1	19	22	8.9999
(..	chr22:20073619-20073849(+)$1	1	60	63	8.9999
.((	chr9:101558577-101558792(-)$1	1	71	74	8.9999
.((	chr10:70481264-70481493(+)$1	1	80	83	8.9999
.((	chr19:18111975-18112272(+)$1	1	1	4	8.9999
...	chr22:20073835-20074067(+)$1	1	23	26	8.9999
.((	chr19:46142015-46142254(-)$1	1	29	32	8.9999
).(	chr22:20073440-20073661(+)$1	1	153	156	8.9999
(..	chr17:46655280-46655515(-)$1	1	14	17	8.9999
)))	chr5:31515522-31515791(-)$1	1	147	150	8.9999
..(	chr5:179046277-179046530(-)$1	1	7	10	8.9999
...	chr19:813520-813749(+)$1	1	94	97	8.9999
(((	chr22:20073532-20073758(+)$1	1	61	64	8.9999
..(	chr19:18112190-18112456(+)$1	1	92	95	8.9999
.((	chr9:101558651-101558910(-)$1	1	189	192	8.9999
...	chr7:150935266-150935514(+)$1	1	74	77	8.9999
((.	chr17:80211014-80211280(-)$1	1	42	45	8.9999
.((	chr3:49055857-49056129(-)$1	1	19	22	8.9999
((.	chr9:139563966-139564209(+)$1	1	78	81	8.9999
..(	chr12:62996797-62997070(+)$1	1	146	149	8.9999
..)	chr19:917492-917733(+)$1	1	16	19	8.9999
...	chr22:20073654-20073903(+)$1	1	25	28	8.9999
...	chr17:30800858-30801064(+)$1	1	113	116	8.9999
...	chr17:30801680-30801883(+)$1	1	43	46	8.9999
(((	chr1:248020672-248020920(+)$1	1	90	93	8.9999
.((	chr9:139565244-139565522(+)$1	1	8	11	8.9999
)).	chr17:30800846-30801058(+)$1	1	125	128	8.9999
(((	chrX:48814285-48814537(-)$1	1	4	7	8.9999
.((	chr9:101558592-101558800(-)$1	1	79	82	8.9999
.((	chr2:242707056-242707337(+)$1	1	44	47	8.9999
.))	chrX:48814219-48814460(-)$1	1	202	205	8.9999
(((	chr22:20073523-20073732(+)$1	1	70	73	8.9999
..(	chr22:20073593-20073819(+)$1	1	0	3	8.9999
.((	chr9:101558633-101558849(-)$1	1	128	131	8.9999
(((	chr7:150935432-150935656(+)$1	1	9	12	8.9999
(((	chr12:69135560-69135827(+)$1	1	45	48	8.9999
.((	chr9:101558600-101558819(-)$1	1	98	101	8.9999
.))	chr22:20073993-20074254(+)$1	1	252	255	8.9999
..(	chr7:99954222-99954445(+)$1	1	38	41	8.9999
.((	chr19:40741696-40741934(-)$1	1	17	20	8.9999
.((	chr10:70481250-70481464(+)$1	1	94	97	8.9999
.))	chr17:33968795-33969030(+)$1	1	26	29	8.9999
.))	chr7:150935484-150935694(+)$1	1	107	110	8.9999
(..	chr10:70287015-70287285(-)$1	1	76	79	8.9999
..(	chr15:65578581-65578821(-)$1	1	19	22	8.9999
(.(	chr1:151238392-151238639(+)$1	1	13	16	8.9999
..(	chr12:62996887-62997129(+)$1	1	56	59	8.9999
(((	chr19:18112274-18112507(+)$1	1	8	11	8.9999
..)	chr19:917430-917681(+)$1	1	78	81	8.9999
(((	chr12:62996679-62996961(+)$1	1	12	15	8.9999
(((	chr22:19951529-19951773(+)$1	1	11	14	8.9999
.((	chr14:105267569-105267823(+)$1	1	43	46	8.9999
(((	chr22:20073462-20073716(+)$1	1	131	134	8.9999
(((	chr7:150935651-150935924(+)$1	1	21	24	8.9999
)..	chr8:41513164-41513391(-)$1	1	125	128	8.9999
(((	chr9:139564643-139564880(+)$1	1	30	33	8.9999
.((	chr22:20074054-20074287(+)$1	1	191	194	8.9999
(((	chr7:150935456-150935682(+)$1	1	27	30	8.9999
..(	chr17:30801683-30801914(+)$1	1	40	43	8.9999
...	chr16:28877662-28877918(+)$1	1	19	22	8.9999
(..	chr17:8108125-8108363(-)$1	1	5	8	8.9999
..(	chr3:49055793-49056057(-)$1	1	14	17	8.9999
(((	chr22:21983337-21983582(-)$1	1	89	92	8.9999
)))	chr22:46505757-46506000(+)$1	1	25	28	8.9999
(..	chr9:140006577-140006827(-)$1	1	24	27	8.9999
)))	chrX:53581764-53582010(-)$1	1	101	104	8.9999
(..	chr9:101558397-101558688(-)$1	1	152	155	8.9999
(((	chr19:2270306-2270559(+)$1	1	94	97	8.9999
.((	chr9:139564522-139564782(+)$1	1	54	57	8.9999
.((	chr9:139564511-139564722(+)$1	1	65	68	8.9999
..(	chr9:139564680-139564892(+)$1	1	93	96	8.9999
(((	chr9:139564627-139564843(+)$1	1	46	49	8.9999
(((	chr3:49050262-49050495(+)$1	1	114	117	8.9999
.))	chr7:150935497-150935708(+)$1	1	94	97	8.9999
.((	chr22:20073777-20074035(+)$1	1	0	3	8.9999
.))	chr7:150935513-150935736(+)$1	1	78	81	8.9999
...	chrX:48814606-48814830(-)$1	1	41	44	8.9999

#PSSM
A : 0.95	a : 0.04	
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_transcript_m2_run2.nuc.txt

#NT
aag	chr13:52857811-52858098(-)$1	287	2	5	9.0000
aag	chr8:93811022-93811276(-)$1	254	18	21	9.0000
AAG	chr11:3414829-3415060(+)$1	231	25	28	9.0000
aag	chr3:38275014-38275296(+)$1	282	56	59	9.0000
aag	chr4:100835928-100836241(-)$1	313	25	28	9.0000
aag	chr6:163885545-163885826(+)$1	281	74	77	9.0000
AAG	chr22:49897237-49897507(-)$1	270	12	15	9.0000
aag	chr1:212228434-212228720(+)$1	286	22	25	9.0000
AAG	chrX:138039090-138039391(-)$1	301	55	58	9.0000
aag	chrX:113131859-113132145(-)$1	286	21	24	9.0000
AAG	chr4:1971891-1972175(+)$1	284	8	11	9.0000
AAG	chr1:39876626-39876941(+)$1	315	23	26	9.0000
aag	chr6:97688860-97689107(-)$1	247	83	86	9.0000
aaG	chr5:53635500-53635740(+)$1	240	15	18	9.0000
AAG	chr22:48161289-48161523(+)$1	234	5	8	9.0000
AAG	chr21:34605194-34605462(+)$1	268	19	22	9.0000
aag	chr6:160438383-160438705(+)$1	322	36	39	9.0000
AAG	chr21:47652383-47652636(+)$1	253	3	6	9.0000
aag	chr9:95002164-95002433(-)$1	269	9	12	9.0000
aag	chr1:61097566-61097839(-)$1	273	144	147	9.0000
AAG	chr13:23908429-23908690(-)$1	261	21	24	9.0000
aag	chr2:44763928-44764269(+)$1	341	59	62	9.0000
Aag	chr13:108518857-108519174(-)$1	317	23	26	9.0000
AAG	chr4:86682653-86682937(+)$1	284	0	3	9.0000
AAG	chr8:6577408-6577685(+)$1	277	0	3	9.0000
aag	chr3:60457205-60457496(-)$1	291	49	52	9.0000
aag	chrX:113170904-113171171(-)$1	267	4	7	9.0000
aag	chr15:56513577-56513830(-)$1	253	1	4	9.0000
AAG	chr7:149279326-149279641(-)$1	315	19	22	9.0000
aag	chr16:23949071-23949384(+)$1	313	6	9	9.0000
aag	chr3:142249562-142249831(-)$1	269	22	25	9.0000
aag	chr17:5472056-5472437(-)$1	381	12	15	9.0000
aag	chr7:140524163-140524407(-)$1	244	17	20	9.0000
AAG	chr5:131638035-131638303(+)$1	268	17	20	9.0000
AAG	chr6:119590319-119590601(-)$1	282	9	12	9.0000
aag	chr1:117067680-117068022(-)$1	342	27	30	9.0000
AAG	chr4:129994415-129994742(-)$1	327	1	4	9.0000
aag	chr7:22687612-22687886(-)$1	274	49	52	9.0000
aag	chr18:2736183-2736470(+)$1	287	25	28	9.0000
AAG	chr1:214815512-214815823(+)$1	311	11	14	9.0000
AAG	chr2:3475413-3475743(+)$1	330	25	28	9.0000
aag	chr17:6791661-6791970(-)$1	309	19	22	9.0000
AAG	chr2:3473091-3473344(+)$1	253	30	33	9.0000
AAG	chr8:58116644-58116909(+)$1	265	4	7	9.0000
aag	chr7:119528603-119528860(-)$1	257	19	22	9.0000
aag	chr1:41631850-41632115(-)$1	265	15	18	9.0000
aag	chr21:15420611-15420886(+)$1	275	28	31	9.0000
aag	chr8:91386653-91386943(+)$1	290	30	33	9.0000
aag	chr12:46791405-46791709(+)$1	304	6	9	9.0000
AAG	chr8:30704754-30705012(-)$1	258	33	36	9.0000
AAG	chr11:62284581-62284826(-)$1	245	12	15	9.0000
aag	chr1:143389442-143389794(-)$1	352	89	92	9.0000
AAG	chr7:5105407-5105668(+)$1	261	3	6	9.0000
aag	chr7:119526818-119527069(-)$1	251	186	189	9.0000
aag	chr7:119545877-119546168(-)$1	291	12	15	9.0000
aag	chr1:246402010-246402265(-)$1	255	32	35	9.0000
aag	chr21:34611166-34611458(+)$1	292	27	30	9.0000
aag	chr9:74763368-74763685(+)$1	317	36	39	9.0000
aag	chr8:91018065-91018366(+)$1	301	5	8	9.0000
aag	chr7:76226606-76226871(+)$1	265	22	25	9.0000
AAG	chr7:149303090-149303329(-)$1	239	2	5	9.0000
aag	chr2:109436466-109436723(+)$1	257	42	45	9.0000
aag	chr22:49949322-49949605(-)$1	283	215	218	9.0000
AAG	chr3:196634746-196635005(+)$1	259	14	17	9.0000
AAG	chr11:62285711-62285983(-)$1	272	14	17	9.0000
AAG	chr15:40914836-40915095(+)$1	259	36	39	9.0000
aag	chr5:65303284-65303578(+)$1	294	81	84	9.0000
aag	chr2:12471130-12471372(+)$1	242	5	8	9.0000
AAG	chr5:53457865-53458171(-)$1	306	8	11	9.0000
aag	chr3:121523553-121523877(-)$1	324	85	88	9.0000
aag	chr7:99498530-99498769(-)$1	239	135	138	9.0000
aag	chr21:39470641-39470966(-)$1	325	13	16	9.0000
aag	chr6:170695152-170695399(+)$1	247	28	31	9.0000
aag	chr6:10936817-10937056(+)$1	239	2	5	9.0000
aag	chr7:76221239-76221536(+)$1	297	11	14	9.0000
aag	chr1:219369707-219369983(+)$1	276	75	78	9.0000
aag	chr7:158568168-158568497(-)$1	329	61	64	9.0000
aag	chr7:43670434-43670727(-)$1	293	17	20	9.0000
AAG	chr11:62300314-62300611(-)$1	297	19	22	9.0000
AAG	chr8:91283692-91283965(+)$1	273	2	5	9.0000
aag	chr8:59539151-59539459(-)$1	308	16	19	9.0000
AAG	chr11:62294329-62294613(-)$1	284	34	37	9.0000
AAG	chr16:74345381-74345676(-)$1	295	17	20	9.0000
aag	chr6:10938147-10938414(+)$1	267	62	65	9.0000
AAG	chr17:6803425-6803694(-)$1	269	65	68	9.0000
aag	chrX:113166804-113167061(-)$1	257	20	23	9.0000
aag	chr22:48153013-48153270(+)$1	257	77	80	9.0000
AAG	chr2:236546238-236546503(+)$1	265	9	12	9.0000
aag	chr18:75689984-75690264(-)$1	280	3	6	9.0000
AAG	chr21:34609896-34610179(+)$1	283	57	60	9.0000
aag	chr6:97688666-97688936(-)$1	270	30	33	9.0000
AAG	chr21:47650514-47650768(+)$1	254	6	9	9.0000
AAG	chr11:62288283-62288548(-)$1	265	1	4	9.0000
aag	chr11:31564777-31565027(+)$1	250	7	10	9.0000
AAG	chr11:13002485-13002762(-)$1	277	169	172	9.0000
aag	chr22:48164658-48164925(+)$1	267	6	9	9.0000
aag	chr6:147572436-147572685(+)$1	249	132	135	9.0000
aag	chr11:95558181-95558510(+)$1	329	18	21	9.0000
AAG	chr8:2608824-2609096(+)$1	272	45	48	9.0000

#otherMatches

#Struct PSSM
nnn	chr16:88655813-88656078(+)$1	265	14	17	9.0000
:::	chr13:52857811-52858098(-)$1	287	2	5	9.0000
QQQ	chr8:93811022-93811276(-)$1	254	18	21	9.0000
:ff	chr11:3414829-3415060(+)$1	231	25	28	9.0000
ggg	chr3:38275014-38275296(+)$1	282	56	59	9.0000
occ	chr4:100835928-100836241(-)$1	313	25	28	9.0000
:::	chr6:163885545-163885826(+)$1	281	74	77	9.0000
OOO	chr22:49897237-49897507(-)$1	270	12	15	9.0000
d::	chr1:212228434-212228720(+)$1	286	22	25	9.0000
555	chrX:138039090-138039391(-)$1	301	55	58	9.0000
FFF	chrX:113131859-113132145(-)$1	286	21	24	9.0000
LEE	chr4:1971891-1972175(+)$1	284	8	11	9.0000
22d	chr1:39876626-39876941(+)$1	315	23	26	9.0000
%cc	chr6:97688860-97689107(-)$1	247	83	86	9.0000
ggg	chr5:53635500-53635740(+)$1	240	15	18	9.0000
EMM	chr22:48161289-48161523(+)$1	234	5	8	9.0000
{DD	chr21:34605194-34605462(+)$1	268	19	22	9.0000
::b	chr6:160438383-160438705(+)$1	322	36	39	9.0000
:::	chr21:47652383-47652636(+)$1	253	3	6	9.0000
:::	chr9:95002164-95002433(-)$1	269	9	12	9.0000
###	chr1:61097566-61097839(-)$1	273	144	147	9.0000
E:e	chr13:23908429-23908690(-)$1	261	21	24	9.0000
::g	chr2:44763928-44764269(+)$1	341	59	62	9.0000
ttt	chr13:108518857-108519174(-)$1	317	23	26	9.0000
:::	chr4:86682653-86682937(+)$1	284	0	3	9.0000
:::	chr8:6577408-6577685(+)$1	277	0	3	9.0000
:::	chr3:60457205-60457496(-)$1	291	49	52	9.0000
hhh	chrX:113170904-113171171(-)$1	267	4	7	9.0000
:::	chr15:56513577-56513830(-)$1	253	1	4	9.0000
:::	chr7:149279326-149279641(-)$1	315	19	22	9.0000
:::	chr16:23949071-23949384(+)$1	313	6	9	9.0000
:::	chr3:142249562-142249831(-)$1	269	22	25	9.0000
GGG	chr17:5472056-5472437(-)$1	381	12	15	9.0000
KKC	chr7:140524163-140524407(-)$1	244	17	20	9.0000
e!!	chr5:131638035-131638303(+)$1	268	17	20	9.0000
mmd	chr6:119590319-119590601(-)$1	282	9	12	9.0000
:::	chr1:117067680-117068022(-)$1	342	27	30	9.0000
:::	chr4:129994415-129994742(-)$1	327	1	4	9.0000
ooo	chr7:22687612-22687886(-)$1	274	49	52	9.0000
EE:	chr18:2736183-2736470(+)$1	287	25	28	9.0000
::c	chr1:214815512-214815823(+)$1	311	11	14	9.0000
NND	chr2:3475413-3475743(+)$1	330	25	28	9.0000
ccc	chr17:6791661-6791970(-)$1	309	19	22	9.0000
DDD	chr2:3473091-3473344(+)$1	253	30	33	9.0000
:::	chr8:58116644-58116909(+)$1	265	4	7	9.0000
:hh	chr7:119528603-119528860(-)$1	257	19	22	9.0000
:::	chr1:41631850-41632115(-)$1	265	15	18	9.0000
DDD	chr21:15420611-15420886(+)$1	275	28	31	9.0000
d::	chr8:91386653-91386943(+)$1	290	30	33	9.0000
EEE	chr12:46791405-46791709(+)$1	304	6	9	9.0000
e:G	chr8:30704754-30705012(-)$1	258	33	36	9.0000
oof	chr11:62284581-62284826(-)$1	245	12	15	9.0000
ddd	chr1:143389442-143389794(-)$1	352	89	92	9.0000
:::	chr7:5105407-5105668(+)$1	261	3	6	9.0000
hhh	chr7:119526818-119527069(-)$1	251	186	189	9.0000
III	chr7:119545877-119546168(-)$1	291	12	15	9.0000
eee	chr1:246402010-246402265(-)$1	255	32	35	9.0000
:::	chr21:34611166-34611458(+)$1	292	27	30	9.0000
""b	chr9:74763368-74763685(+)$1	317	36	39	9.0000
:::	chr8:91018065-91018366(+)$1	301	5	8	9.0000
[bb	chr7:76226606-76226871(+)$1	265	22	25	9.0000
:::	chr7:149303090-149303329(-)$1	239	2	5	9.0000
eee	chr2:109436466-109436723(+)$1	257	42	45	9.0000
eee	chr22:49949322-49949605(-)$1	283	215	218	9.0000
KKB	chr3:196634746-196635005(+)$1	259	14	17	9.0000
ppp	chr11:62285711-62285983(-)$1	272	14	17	9.0000
44d	chr15:40914836-40915095(+)$1	259	36	39	9.0000
::g	chr5:65303284-65303578(+)$1	294	81	84	9.0000
:::	chr2:12471130-12471372(+)$1	242	5	8	9.0000
:::	chr5:53457865-53458171(-)$1	306	8	11	9.0000
sss	chr3:121523553-121523877(-)$1	324	85	88	9.0000
444	chr7:99498530-99498769(-)$1	239	135	138	9.0000
!dd	chr21:39470641-39470966(-)$1	325	13	16	9.0000
nnn	chr6:170695152-170695399(+)$1	247	28	31	9.0000
FFF	chr6:10936817-10937056(+)$1	239	2	5	9.0000
KBB	chr7:76221239-76221536(+)$1	297	11	14	9.0000
qqq	chr1:219369707-219369983(+)$1	276	75	78	9.0000
ttt	chr7:158568168-158568497(-)$1	329	61	64	9.0000
PPP	chr7:43670434-43670727(-)$1	293	17	20	9.0000
:::	chr11:62300314-62300611(-)$1	297	19	22	9.0000
iii	chr8:91283692-91283965(+)$1	273	2	5	9.0000
::c	chr8:59539151-59539459(-)$1	308	16	19	9.0000
sss	chr11:62294329-62294613(-)$1	284	34	37	9.0000
iii	chr16:74345381-74345676(-)$1	295	17	20	9.0000
:GG	chr6:10938147-10938414(+)$1	267	62	65	9.0000
##c	chr17:6803425-6803694(-)$1	269	65	68	9.0000
mma	chrX:113166804-113167061(-)$1	257	20	23	9.0000
GGH	chr22:48153013-48153270(+)$1	257	77	80	9.0000
:DD	chr2:236546238-236546503(+)$1	265	9	12	9.0000
:::	chr18:75689984-75690264(-)$1	280	3	6	9.0000
:hh	chr21:34609896-34610179(+)$1	283	57	60	9.0000
555	chr6:97688666-97688936(-)$1	270	30	33	9.0000
lle	chr21:47650514-47650768(+)$1	254	6	9	9.0000
:::	chr11:62288283-62288548(-)$1	265	1	4	9.0000
:::	chr11:31564777-31565027(+)$1	250	7	10	9.0000
::f	chr11:13002485-13002762(-)$1	277	169	172	9.0000
G::	chr22:48164658-48164925(+)$1	267	6	9	9.0000
::c	chr6:147572436-147572685(+)$1	249	132	135	9.0000
III	chr11:95558181-95558510(+)$1	329	18	21	9.0000
bnn	chr8:2608824-2609096(+)$1	272	45	48	9.0000

#DB
...	chr16:88655813-88656078(+)$1	1	14	17	9.0000
...	chr13:52857811-52858098(-)$1	1	2	5	9.0000
...	chr8:93811022-93811276(-)$1	1	18	21	9.0000
.((	chr11:3414829-3415060(+)$1	1	25	28	9.0000
(((	chr3:38275014-38275296(+)$1	1	56	59	9.0000
.))	chr4:100835928-100836241(-)$1	1	25	28	9.0000
...	chr6:163885545-163885826(+)$1	1	74	77	9.0000
...	chr22:49897237-49897507(-)$1	1	12	15	9.0000
)..	chr1:212228434-212228720(+)$1	1	22	25	9.0000
...	chrX:138039090-138039391(-)$1	1	55	58	9.0000
(((	chrX:113131859-113132145(-)$1	1	21	24	9.0000
.((	chr4:1971891-1972175(+)$1	1	8	11	9.0000
..)	chr1:39876626-39876941(+)$1	1	23	26	9.0000
.((	chr6:97688860-97689107(-)$1	1	83	86	9.0000
(((	chr5:53635500-53635740(+)$1	1	15	18	9.0000
(..	chr22:48161289-48161523(+)$1	1	5	8	9.0000
.((	chr21:34605194-34605462(+)$1	1	19	22	9.0000
..(	chr6:160438383-160438705(+)$1	1	36	39	9.0000
...	chr21:47652383-47652636(+)$1	1	3	6	9.0000
...	chr9:95002164-95002433(-)$1	1	9	12	9.0000
...	chr1:61097566-61097839(-)$1	1	144	147	9.0000
(.(	chr13:23908429-23908690(-)$1	1	21	24	9.0000
..(	chr2:44763928-44764269(+)$1	1	59	62	9.0000
...	chr13:108518857-108519174(-)$1	1	23	26	9.0000
...	chr4:86682653-86682937(+)$1	1	0	3	9.0000
...	chr8:6577408-6577685(+)$1	1	0	3	9.0000
...	chr3:60457205-60457496(-)$1	1	49	52	9.0000
(((	chrX:113170904-113171171(-)$1	1	4	7	9.0000
...	chr15:56513577-56513830(-)$1	1	1	4	9.0000
...	chr7:149279326-149279641(-)$1	1	19	22	9.0000
...	chr16:23949071-23949384(+)$1	1	6	9	9.0000
...	chr3:142249562-142249831(-)$1	1	22	25	9.0000
(((	chr17:5472056-5472437(-)$1	1	12	15	9.0000
..(	chr7:140524163-140524407(-)$1	1	17	20	9.0000
(..	chr5:131638035-131638303(+)$1	1	17	20	9.0000
..)	chr6:119590319-119590601(-)$1	1	9	12	9.0000
...	chr1:117067680-117068022(-)$1	1	27	30	9.0000
...	chr4:129994415-129994742(-)$1	1	1	4	9.0000
...	chr7:22687612-22687886(-)$1	1	49	52	9.0000
((.	chr18:2736183-2736470(+)$1	1	25	28	9.0000
..(	chr1:214815512-214815823(+)$1	1	11	14	9.0000
..(	chr2:3475413-3475743(+)$1	1	25	28	9.0000
(((	chr17:6791661-6791970(-)$1	1	19	22	9.0000
(((	chr2:3473091-3473344(+)$1	1	30	33	9.0000
...	chr8:58116644-58116909(+)$1	1	4	7	9.0000
.((	chr7:119528603-119528860(-)$1	1	19	22	9.0000
...	chr1:41631850-41632115(-)$1	1	15	18	9.0000
(((	chr21:15420611-15420886(+)$1	1	28	31	9.0000
)..	chr8:91386653-91386943(+)$1	1	30	33	9.0000
(((	chr12:46791405-46791709(+)$1	1	6	9	9.0000
).(	chr8:30704754-30705012(-)$1	1	33	36	9.0000
..)	chr11:62284581-62284826(-)$1	1	12	15	9.0000
(((	chr1:143389442-143389794(-)$1	1	89	92	9.0000
...	chr7:5105407-5105668(+)$1	1	3	6	9.0000
)))	chr7:119526818-119527069(-)$1	1	186	189	9.0000
(((	chr7:119545877-119546168(-)$1	1	12	15	9.0000
(((	chr1:246402010-246402265(-)$1	1	32	35	9.0000
...	chr21:34611166-34611458(+)$1	1	27	30	9.0000
..(	chr9:74763368-74763685(+)$1	1	36	39	9.0000
...	chr8:91018065-91018366(+)$1	1	5	8	9.0000
.((	chr7:76226606-76226871(+)$1	1	22	25	9.0000
...	chr7:149303090-149303329(-)$1	1	2	5	9.0000
(((	chr2:109436466-109436723(+)$1	1	42	45	9.0000
)))	chr22:49949322-49949605(-)$1	1	215	218	9.0000
..(	chr3:196634746-196635005(+)$1	1	14	17	9.0000
...	chr11:62285711-62285983(-)$1	1	14	17	9.0000
..)	chr15:40914836-40915095(+)$1	1	36	39	9.0000
..(	chr5:65303284-65303578(+)$1	1	81	84	9.0000
...	chr2:12471130-12471372(+)$1	1	5	8	9.0000
...	chr5:53457865-53458171(-)$1	1	8	11	9.0000
...	chr3:121523553-121523877(-)$1	1	85	88	9.0000
...	chr7:99498530-99498769(-)$1	1	135	138	9.0000
.((	chr21:39470641-39470966(-)$1	1	13	16	9.0000
...	chr6:170695152-170695399(+)$1	1	28	31	9.0000
(((	chr6:10936817-10937056(+)$1	1	2	5	9.0000
.((	chr7:76221239-76221536(+)$1	1	11	14	9.0000
...	chr1:219369707-219369983(+)$1	1	75	78	9.0000
...	chr7:158568168-158568497(-)$1	1	61	64	9.0000
...	chr7:43670434-43670727(-)$1	1	17	20	9.0000
...	chr11:62300314-62300611(-)$1	1	19	22	9.0000
(((	chr8:91283692-91283965(+)$1	1	2	5	9.0000
..(	chr8:59539151-59539459(-)$1	1	16	19	9.0000
...	chr11:62294329-62294613(-)$1	1	34	37	9.0000
(((	chr16:74345381-74345676(-)$1	1	17	20	9.0000
.((	chr6:10938147-10938414(+)$1	1	62	65	9.0000
..(	chr17:6803425-6803694(-)$1	1	65	68	9.0000
..)	chrX:113166804-113167061(-)$1	1	20	23	9.0000
(((	chr22:48153013-48153270(+)$1	1	77	80	9.0000
.((	chr2:236546238-236546503(+)$1	1	9	12	9.0000
...	chr18:75689984-75690264(-)$1	1	3	6	9.0000
.((	chr21:34609896-34610179(+)$1	1	57	60	9.0000
...	chr6:97688666-97688936(-)$1	1	30	33	9.0000
..)	chr21:47650514-47650768(+)$1	1	6	9	9.0000
...	chr11:62288283-62288548(-)$1	1	1	4	9.0000
...	chr11:31564777-31565027(+)$1	1	7	10	9.0000
..(	chr11:13002485-13002762(-)$1	1	169	172	9.0000
(..	chr22:48164658-48164925(+)$1	1	6	9	9.0000
..(	chr6:147572436-147572685(+)$1	1	132	135	9.0000
(((	chr11:95558181-95558510(+)$1	1	18	21	9.0000
(..	chr8:2608824-2609096(+)$1	1	45	48	9.0000

#PSSM
a : 0.61	A : 0.39	
a : 0.62	A : 0.38	
g : 0.61	G : 0.39	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_CDS_m3_run2.nuc.txt

#NT
GGAG	chr17:79826225-79826480(-)$1	255	56	60	12.0000
GGAG	chr12:123889349-123889574(+)$1	225	13	17	12.0000
GGAG	chr17:74078580-74078889(-)$1	309	9	13	12.0000
GGAG	chr13:45007940-45008217(-)$1	277	200	204	12.0000
GGAG	chr17:79826381-79826616(-)$1	235	108	112	12.0000
GGAG	chr22:39917704-39917950(+)$1	246	104	108	12.0000
GGAG	chr21:45565319-45565609(+)$1	290	180	184	12.0000
GGAG	chr22:39917677-39917896(+)$1	219	131	135	12.0000
GGAG	chr10:71136669-71136912(+)$1	243	51	55	12.0000
GGAG	chr22:31285380-31285621(+)$1	241	20	24	12.0000
GGAG	chr22:43578966-43579236(-)$1	270	13	17	12.0000
GGAG	chr17:42272704-42272935(-)$1	231	121	125	12.0000
GGAG	chr19:48700329-48700628(+)$1	299	4	8	12.0000
GGAG	chr5:159492233-159492502(+)$1	269	191	195	12.0000
GGAG	chr12:133294480-133294741(+)$1	261	107	111	12.0000
GGAG	chr6:33164181-33164423(-)$1	242	47	51	12.0000
GGAG	chr20:376746-376973(+)$1	227	110	114	12.0000
GGAG	chr8:27143495-27143767(-)$1	272	112	116	12.0000
GGAG	chr19:49377856-49378109(+)$1	253	17	21	12.0000
ggag	chr1:2522421-2522648(+)$1	227	132	136	12.0000
GGAG	chr17:17715185-17715488(-)$1	303	248	252	12.0000
GGAG	chr17:73841847-73842125(-)$1	278	12	16	12.0000
GGAG	chr22:39917833-39918085(+)$1	252	101	105	12.0000
GGAG	chr22:19709094-19709356(+)$1	262	67	71	12.0000
GGAG	chr1:228680742-228681015(+)$1	273	76	80	12.0000
GGAG	chr11:73685993-73686261(-)$1	268	52	56	12.0000
ggag	chr19:1592454-1592847(-)$1	393	27	31	12.0000
ggag	chr19:41246784-41247068(-)$1	284	107	111	12.0000
GGAG	chrX:79932220-79932563(-)$1	343	57	61	12.0000
GGAG	chr1:11849250-11849501(-)$1	251	185	189	12.0000
GGAG	chr19:49376605-49376865(+)$1	260	38	42	12.0000
ggag	chr19:3539129-3539388(-)$1	259	78	82	12.0000
GGAG	chr16:67976988-67977291(-)$1	303	17	21	12.0000
GGAG	chr5:140905619-140905838(-)$1	219	109	113	12.0000
GGAG	chr19:3542729-3542972(-)$1	243	9	13	12.0000
GGAG	chr22:39917937-39918185(+)$1	248	240	244	12.0000
ggag	chr1:11848297-11848599(-)$1	302	19	23	12.0000
GGAG	chr16:30681318-30681541(+)$1	223	55	59	12.0000
ggag	chr14:23528238-23528499(-)$1	261	1	5	12.0000
GGAG	chr12:57911005-57911275(-)$1	270	19	23	12.0000
ggag	chr12:6879010-6879264(+)$1	254	75	79	12.0000
GGAG	chr6:33382617-33382928(+)$1	311	59	63	12.0000
GGAG	chr14:105677356-105677662(-)$1	306	59	63	12.0000
GGAG	chr19:4366837-4367088(-)$1	251	115	119	12.0000
GGAG	chr11:61632637-61632848(+)$1	211	73	77	12.0000
GGAG	chr19:49376939-49377183(+)$1	244	27	31	12.0000
GGAG	chr19:49377112-49377362(+)$1	250	52	56	12.0000
GGAG	chr12:57910953-57911205(-)$1	252	63	67	12.0000
GGAG	chr19:45853477-45853731(-)$1	254	10	14	12.0000
GGAG	chr1:11848249-11848497(-)$1	248	25	29	12.0000
GGAG	chr19:50046211-50046474(+)$1	263	93	97	12.0000
GGAG	chr20:33590812-33591080(-)$1	268	23	27	12.0000
GGAG	chr1:156109453-156109704(+)$1	251	128	132	12.0000
GGAG	chr1:156713495-156713770(-)$1	275	31	35	12.0000
GGAG	chr8:97345851-97346070(+)$1	219	21	25	12.0000
GGAG	chr2:232576577-232576793(+)$1	216	18	22	12.0000
GGAG	chr9:134353811-134354051(+)$1	240	83	87	12.0000
GGAG	chr3:128852816-128853139(-)$1	323	157	161	12.0000
GGAG	chr12:121000751-121000973(+)$1	222	37	41	12.0000
GGAG	chr9:123620071-123620345(-)$1	274	36	40	12.0000
GGAG	chr19:45496200-45496505(+)$1	305	68	72	12.0000
GGAG	chr1:36808866-36809108(-)$1	242	140	144	12.0000
GGAG	chr5:139625020-139625324(-)$1	304	9	13	12.0000
GGAG	chr19:49422222-49422472(+)$1	250	66	70	12.0000
GGAG	chr16:69354043-69354272(+)$1	229	113	117	12.0000
GGAG	chr12:57910589-57910832(-)$1	243	6	10	12.0000
GGAG	chr14:103805008-103805247(+)$1	239	71	75	12.0000
GGAG	chr16:31501540-31501762(-)$1	222	48	52	12.0000
GGAG	chr12:57910790-57911052(-)$1	262	145	149	12.0000
GGAG	chr2:242167518-242167777(-)$1	259	40	44	12.0000
GGAG	chr16:1837900-1838154(+)$1	254	115	119	12.0000
GGAG	chr22:42981174-42981420(-)$1	246	59	63	12.0000
GGAG	chr1:15987588-15987853(+)$1	265	46	50	12.0000
GGAG	chr1:228680862-228681074(+)$1	212	64	68	12.0000
GGAG	chr16:723886-724202(+)$1	316	16	20	12.0000
GGAG	chr1:15987167-15987413(+)$1	246	221	225	12.0000
GGAG	chr19:55998517-55998802(+)$1	285	152	156	12.0000
GGAG	chr11:767231-767482(-)$1	251	70	74	12.0000
GGAG	chr12:93969320-93969604(+)$1	284	114	118	12.0000
GGAg	chr15:42707551-42707781(-)$1	230	159	163	12.0000
GGAG	chr16:28847481-28847742(+)$1	261	98	102	12.0000
GGAG	chr6:30708224-30708467(-)$1	243	159	163	12.0000

#otherMatches

#Struct PSSM
FFVV	chr19:36641089-36641328(+)$1	239	131	135	12.0000
hhhh	chr17:79826225-79826480(-)$1	255	56	60	12.0000
ffcc	chr12:123889349-123889574(+)$1	225	13	17	12.0000
C:::	chr17:74078580-74078889(-)$1	309	9	13	12.0000
EEhh	chr13:45007940-45008217(-)$1	277	200	204	12.0000
iiii	chr17:79826381-79826616(-)$1	235	108	112	12.0000
BB{A	chr22:39917704-39917950(+)$1	246	104	108	12.0000
gg22	chr21:45565319-45565609(+)$1	290	180	184	12.0000
ffff	chr22:39917677-39917896(+)$1	219	131	135	12.0000
ff[d	chr10:71136669-71136912(+)$1	243	51	55	12.0000
offf	chr22:31285380-31285621(+)$1	241	20	24	12.0000
HHHH	chr22:43578966-43579236(-)$1	270	13	17	12.0000
hhhh	chr17:42272704-42272935(-)$1	231	121	125	12.0000
FFQQ	chr19:48700329-48700628(+)$1	299	4	8	12.0000
ffff	chr5:159492233-159492502(+)$1	269	191	195	12.0000
ffff	chr12:133294480-133294741(+)$1	261	107	111	12.0000
dd]c	chr6:33164181-33164423(-)$1	242	47	51	12.0000
dddd	chr20:376746-376973(+)$1	227	110	114	12.0000
BB{D	chr8:27143495-27143767(-)$1	272	112	116	12.0000
eeee	chr19:49377856-49378109(+)$1	253	17	21	12.0000
DD}B	chr1:2522421-2522648(+)$1	227	132	136	12.0000
d22d	chr17:17715185-17715488(-)$1	303	248	252	12.0000
ffff	chr17:73841847-73842125(-)$1	278	12	16	12.0000
ffff	chr22:39917833-39918085(+)$1	252	101	105	12.0000
II::	chr22:19709094-19709356(+)$1	262	67	71	12.0000
dd[b	chr1:228680742-228681015(+)$1	273	76	80	12.0000
eeee	chr11:73685993-73686261(-)$1	268	52	56	12.0000
HHHH	chr19:1592454-1592847(-)$1	393	27	31	12.0000
{FFF	chr19:41246784-41247068(-)$1	284	107	111	12.0000
qqqq	chrX:79932220-79932563(-)$1	343	57	61	12.0000
e===	chr1:11849250-11849501(-)$1	251	185	189	12.0000
EEEE	chr19:49376605-49376865(+)$1	260	38	42	12.0000
d22a	chr19:3539129-3539388(-)$1	259	78	82	12.0000
DDKK	chr16:67976988-67977291(-)$1	303	17	21	12.0000
bbmm	chr5:140905619-140905838(-)$1	219	109	113	12.0000
::::	chr19:3542729-3542972(-)$1	243	9	13	12.0000
FFFF	chr22:39917937-39918185(+)$1	248	240	244	12.0000
HHHH	chr1:11848297-11848599(-)$1	302	19	23	12.0000
bbcc	chr16:30681318-30681541(+)$1	223	55	59	12.0000
b"""	chr14:23528238-23528499(-)$1	261	1	5	12.0000
dddo	chr12:57911005-57911275(-)$1	270	19	23	12.0000
gggg	chr12:6879010-6879264(+)$1	254	75	79	12.0000
iiii	chr6:33382617-33382928(+)$1	311	59	63	12.0000
eeee	chr14:105677356-105677662(-)$1	306	59	63	12.0000
b22a	chr19:4366837-4367088(-)$1	251	115	119	12.0000
eeee	chr11:61632637-61632848(+)$1	211	73	77	12.0000
C{DD	chr19:49376939-49377183(+)$1	244	27	31	12.0000
dd[c	chr19:49377112-49377362(+)$1	250	52	56	12.0000
llgg	chr12:57910953-57911205(-)$1	252	63	67	12.0000
EKKC	chr19:45853477-45853731(-)$1	254	10	14	12.0000
dd[d	chr1:11848249-11848497(-)$1	248	25	29	12.0000
3a]i	chr19:50046211-50046474(+)$1	263	93	97	12.0000
qqqq	chr20:33590812-33591080(-)$1	268	23	27	12.0000
22bb	chr1:156109453-156109704(+)$1	251	128	132	12.0000
ggg#	chr1:156713495-156713770(-)$1	275	31	35	12.0000
e::B	chr8:97345851-97346070(+)$1	219	21	25	12.0000
pppp	chr2:232576577-232576793(+)$1	216	18	22	12.0000
bb55	chr9:134353811-134354051(+)$1	240	83	87	12.0000
>>>>	chr3:128852816-128853139(-)$1	323	157	161	12.0000
dd[f	chr12:121000751-121000973(+)$1	222	37	41	12.0000
FF::	chr9:123620071-123620345(-)$1	274	36	40	12.0000
eeee	chr19:45496200-45496505(+)$1	305	68	72	12.0000
hhhh	chr1:36808866-36809108(-)$1	242	140	144	12.0000
EEE{	chr5:139625020-139625324(-)$1	304	9	13	12.0000
dddd	chr19:49422222-49422472(+)$1	250	66	70	12.0000
EEEE	chr16:69354043-69354272(+)$1	229	113	117	12.0000
BB::	chr12:57910589-57910832(-)$1	243	6	10	12.0000
d22a	chr14:103805008-103805247(+)$1	239	71	75	12.0000
iiii	chr16:31501540-31501762(-)$1	222	48	52	12.0000
bb22	chr12:57910790-57911052(-)$1	262	145	149	12.0000
777g	chr2:242167518-242167777(-)$1	259	40	44	12.0000
ffff	chr16:1837900-1838154(+)$1	254	115	119	12.0000
gggg	chr22:42981174-42981420(-)$1	246	59	63	12.0000
ffff	chr1:15987588-15987853(+)$1	265	46	50	12.0000
cc[c	chr1:228680862-228681074(+)$1	212	64	68	12.0000
JJJJ	chr16:723886-724202(+)$1	316	16	20	12.0000
pppp	chr1:15987167-15987413(+)$1	246	221	225	12.0000
a]cc	chr19:55998517-55998802(+)$1	285	152	156	12.0000
ffff	chr11:767231-767482(-)$1	251	70	74	12.0000
hhhh	chr12:93969320-93969604(+)$1	284	114	118	12.0000
ccc]	chr15:42707551-42707781(-)$1	230	159	163	12.0000
JJJK	chr16:28847481-28847742(+)$1	261	98	102	12.0000
]ccc	chr6:30708224-30708467(-)$1	243	159	163	12.0000

#DB
((..	chr19:36641089-36641328(+)$1	1	131	135	12.0000
))))	chr17:79826225-79826480(-)$1	1	56	60	12.0000
((((	chr12:123889349-123889574(+)$1	1	13	17	12.0000
(...	chr17:74078580-74078889(-)$1	1	9	13	12.0000
))((	chr13:45007940-45008217(-)$1	1	200	204	12.0000
))))	chr17:79826381-79826616(-)$1	1	108	112	12.0000
((.(	chr22:39917704-39917950(+)$1	1	104	108	12.0000
))..	chr21:45565319-45565609(+)$1	1	180	184	12.0000
))))	chr22:39917677-39917896(+)$1	1	131	135	12.0000
((.(	chr10:71136669-71136912(+)$1	1	51	55	12.0000
.)))	chr22:31285380-31285621(+)$1	1	20	24	12.0000
((((	chr22:43578966-43579236(-)$1	1	13	17	12.0000
))))	chr17:42272704-42272935(-)$1	1	121	125	12.0000
((..	chr19:48700329-48700628(+)$1	1	4	8	12.0000
))))	chr5:159492233-159492502(+)$1	1	191	195	12.0000
))))	chr12:133294480-133294741(+)$1	1	107	111	12.0000
)).)	chr6:33164181-33164423(-)$1	1	47	51	12.0000
((((	chr20:376746-376973(+)$1	1	110	114	12.0000
((.(	chr8:27143495-27143767(-)$1	1	112	116	12.0000
((((	chr19:49377856-49378109(+)$1	1	17	21	12.0000
)).)	chr1:2522421-2522648(+)$1	1	132	136	12.0000
)..)	chr17:17715185-17715488(-)$1	1	248	252	12.0000
))))	chr17:73841847-73842125(-)$1	1	12	16	12.0000
))))	chr22:39917833-39918085(+)$1	1	101	105	12.0000
((..	chr22:19709094-19709356(+)$1	1	67	71	12.0000
((.(	chr1:228680742-228681015(+)$1	1	76	80	12.0000
((((	chr11:73685993-73686261(-)$1	1	52	56	12.0000
((((	chr19:1592454-1592847(-)$1	1	27	31	12.0000
.(((	chr19:41246784-41247068(-)$1	1	107	111	12.0000
....	chrX:79932220-79932563(-)$1	1	57	61	12.0000
))))	chr1:11849250-11849501(-)$1	1	185	189	12.0000
((((	chr19:49376605-49376865(+)$1	1	38	42	12.0000
)..)	chr19:3539129-3539388(-)$1	1	78	82	12.0000
((..	chr16:67976988-67977291(-)$1	1	17	21	12.0000
((..	chr5:140905619-140905838(-)$1	1	109	113	12.0000
....	chr19:3542729-3542972(-)$1	1	9	13	12.0000
))))	chr22:39917937-39918185(+)$1	1	240	244	12.0000
((((	chr1:11848297-11848599(-)$1	1	19	23	12.0000
))))	chr16:30681318-30681541(+)$1	1	55	59	12.0000
(...	chr14:23528238-23528499(-)$1	1	1	5	12.0000
(((.	chr12:57911005-57911275(-)$1	1	19	23	12.0000
))))	chr12:6879010-6879264(+)$1	1	75	79	12.0000
((((	chr6:33382617-33382928(+)$1	1	59	63	12.0000
))))	chr14:105677356-105677662(-)$1	1	59	63	12.0000
)..)	chr19:4366837-4367088(-)$1	1	115	119	12.0000
))))	chr11:61632637-61632848(+)$1	1	73	77	12.0000
(.((	chr19:49376939-49377183(+)$1	1	27	31	12.0000
((.(	chr19:49377112-49377362(+)$1	1	52	56	12.0000
..))	chr12:57910953-57911205(-)$1	1	63	67	12.0000
(..(	chr19:45853477-45853731(-)$1	1	10	14	12.0000
((.(	chr1:11848249-11848497(-)$1	1	25	29	12.0000
.).)	chr19:50046211-50046474(+)$1	1	93	97	12.0000
....	chr20:33590812-33591080(-)$1	1	23	27	12.0000
..))	chr1:156109453-156109704(+)$1	1	128	132	12.0000
(((.	chr1:156713495-156713770(-)$1	1	31	35	12.0000
)..(	chr8:97345851-97346070(+)$1	1	21	25	12.0000
....	chr2:232576577-232576793(+)$1	1	18	22	12.0000
))..	chr9:134353811-134354051(+)$1	1	83	87	12.0000
....	chr3:128852816-128853139(-)$1	1	157	161	12.0000
((.(	chr12:121000751-121000973(+)$1	1	37	41	12.0000
((..	chr9:123620071-123620345(-)$1	1	36	40	12.0000
))))	chr19:45496200-45496505(+)$1	1	68	72	12.0000
))))	chr1:36808866-36809108(-)$1	1	140	144	12.0000
(((.	chr5:139625020-139625324(-)$1	1	9	13	12.0000
))))	chr19:49422222-49422472(+)$1	1	66	70	12.0000
))))	chr16:69354043-69354272(+)$1	1	113	117	12.0000
((..	chr12:57910589-57910832(-)$1	1	6	10	12.0000
)..)	chr14:103805008-103805247(+)$1	1	71	75	12.0000
((((	chr16:31501540-31501762(-)$1	1	48	52	12.0000
))..	chr12:57910790-57911052(-)$1	1	145	149	12.0000
...)	chr2:242167518-242167777(-)$1	1	40	44	12.0000
((((	chr16:1837900-1838154(+)$1	1	115	119	12.0000
))))	chr22:42981174-42981420(-)$1	1	59	63	12.0000
))))	chr1:15987588-15987853(+)$1	1	46	50	12.0000
((.(	chr1:228680862-228681074(+)$1	1	64	68	12.0000
((((	chr16:723886-724202(+)$1	1	16	20	12.0000
....	chr1:15987167-15987413(+)$1	1	221	225	12.0000
).))	chr19:55998517-55998802(+)$1	1	152	156	12.0000
((((	chr11:767231-767482(-)$1	1	70	74	12.0000
))))	chr12:93969320-93969604(+)$1	1	114	118	12.0000
))).	chr15:42707551-42707781(-)$1	1	159	163	12.0000
(((.	chr16:28847481-28847742(+)$1	1	98	102	12.0000
.)))	chr6:30708224-30708467(-)$1	1	159	163	12.0000

#PSSM
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	
A : 0.91	a : 0.08	
G : 0.90	g : 0.09	

#score	996.0000000000002
#seq	83
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_UTR_m3_run1.nuc.txt

#NT
AGAAA	chr6:111695121-111695407(-)$1	286	20	25	15.0000
agaaa	chrX:106307723-106307983(-)$1	260	141	146	15.0000
AGAAA	chr10:129897179-129897480(-)$1	301	28	33	15.0000
AGAAA	chr15:40913089-40913334(+)$1	245	80	85	15.0000
AGAAA	chr1:203766418-203766703(+)$1	285	135	140	15.0000
AGAAA	chr1:155451089-155451325(-)$1	236	86	91	15.0000
AGAAA	chr14:76672762-76673016(+)$1	254	22	27	15.0000
AGAAA	chr15:40915230-40915535(+)$1	305	87	92	15.0000
AGAAA	chr6:56966800-56967093(+)$1	293	49	54	15.0000
AGAAA	chr18:9255272-9255515(+)$1	243	152	157	15.0000
AGAAA	chr15:40913510-40913771(+)$1	261	130	135	15.0000
AGAAA	chr3:121415970-121416260(-)$1	290	28	33	15.0000
agaaa	chr17:58326922-58327203(-)$1	281	117	122	15.0000
agaaa	chr10:38411874-38412224(+)$1	350	4	9	15.0000
AGAAA	chr15:40914836-40915095(+)$1	259	126	131	15.0000
AGAAA	chr15:40914895-40915219(+)$1	324	67	72	15.0000
AGAAA	chr15:40914291-40914596(+)$1	305	9	14	15.0000
AGAAA	chr17:41245419-41245721(-)$1	302	58	63	15.0000
AGAAA	chr7:44923009-44923317(-)$1	308	248	253	15.0000
AGAAA	chr1:155451356-155451640(-)$1	284	100	105	15.0000
AGAAA	chr15:40913962-40914228(+)$1	266	47	52	15.0000
AGAAA	chr2:101624056-101624371(+)$1	315	54	59	15.0000
agaaa	chr10:38409721-38410032(+)$1	311	9	14	15.0000
agaaa	chr4:2330640-2330998(-)$1	358	127	132	15.0000
AGAAA	chr3:178976754-178977029(-)$1	275	27	32	15.0000
AGAAA	chr17:41246386-41246669(-)$1	283	18	23	15.0000
AGAAA	chr17:41246004-41246276(-)$1	272	8	13	15.0000
agaaa	chr13:108518857-108519174(-)$1	317	94	99	15.0000
agaaa	chr7:5107239-5107496(+)$1	257	86	91	15.0000
AGAaa	chr1:92853100-92853521(+)$1	421	196	201	15.0000
AGAAA	chr19:40539816-40540129(-)$1	313	31	36	15.0000
AGAAA	chr18:9255527-9255771(+)$1	244	13	18	15.0000
AGAAA	chr6:111695581-111695840(-)$1	259	73	78	15.0000
AGAAA	chr1:203768747-203768965(+)$1	218	1	6	15.0000
AGAAA	chr19:58774400-58774683(+)$1	283	102	107	15.0000
agaaa	chrX:106307587-106307921(-)$1	334	79	84	15.0000
AGAAA	chr1:67724667-67724962(+)$1	295	168	173	15.0000
AGAAA	chr2:109086566-109086892(+)$1	326	96	101	15.0000
AGAAA	chr4:761155-761423(-)$1	268	60	65	15.0000
AGAAA	chr2:109087823-109088099(+)$1	276	253	258	15.0000
AGAAA	chr6:3270301-3270562(+)$1	261	14	19	15.0000
AGAAA	chr4:761223-761500(-)$1	277	137	142	15.0000
AGAAA	chr6:111694880-111695209(-)$1	329	267	272	15.0000
agaaa	chr8:59473933-59474219(+)$1	286	150	155	15.0000
AGAAA	chr3:121414284-121414551(-)$1	267	13	18	15.0000
AGAAA	chr17:41245941-41246199(-)$1	258	207	212	15.0000
AGAAA	chr2:109088096-109088376(+)$1	280	121	126	15.0000
AGAAA	chr6:111694048-111694310(-)$1	262	162	167	15.0000
AGAAA	chr3:15084401-15084659(-)$1	258	19	24	15.0000
agaaa	chr10:38410483-38410729(+)$1	246	112	117	15.0000
AGAAA	chr6:111694126-111694442(-)$1	316	294	299	15.0000
AGAAA	chr18:9255370-9255620(+)$1	250	170	175	15.0000
AGAAA	chr12:54396516-54396819(+)$1	303	95	100	15.0000
AGAAA	chr17:41243693-41243933(-)$1	240	5	10	15.0000
AGAAA	chr19:11892263-11892581(+)$1	318	42	47	15.0000
AGAAA	chr10:38407909-38408195(+)$1	286	231	236	15.0000

#otherMatches

#Struct PSSM
mbb22	chr19:58772383-58772637(+)$1	254	199	204	15.0000
:::dd	chr6:111695121-111695407(-)$1	286	20	25	15.0000
####c	chrX:106307723-106307983(-)$1	260	141	146	15.0000
iiiii	chr10:129897179-129897480(-)$1	301	28	33	15.0000
dddd%	chr15:40913089-40913334(+)$1	245	80	85	15.0000
f5555	chr1:203766418-203766703(+)$1	285	135	140	15.0000
:::::	chr1:155451089-155451325(-)$1	236	86	91	15.0000
::::G	chr14:76672762-76673016(+)$1	254	22	27	15.0000
FFF::	chr15:40915230-40915535(+)$1	305	87	92	15.0000
:::::	chr6:56966800-56967093(+)$1	293	49	54	15.0000
&bb%%	chr18:9255272-9255515(+)$1	243	152	157	15.0000
eeeee	chr15:40913510-40913771(+)$1	261	130	135	15.0000
^^^^^	chr3:121415970-121416260(-)$1	290	28	33	15.0000
cmmmm	chr17:58326922-58327203(-)$1	281	117	122	15.0000
FF:::	chr10:38411874-38412224(+)$1	350	4	9	15.0000
ff:::	chr15:40914836-40915095(+)$1	259	126	131	15.0000
:::::	chr15:40914895-40915219(+)$1	324	67	72	15.0000
:::::	chr15:40914291-40914596(+)$1	305	9	14	15.0000
e[bby	chr17:41245419-41245721(-)$1	302	58	63	15.0000
ggooo	chr7:44923009-44923317(-)$1	308	248	253	15.0000
::::E	chr1:155451356-155451640(-)$1	284	100	105	15.0000
:::::	chr15:40913962-40914228(+)$1	266	47	52	15.0000
mmmmc	chr2:101624056-101624371(+)$1	315	54	59	15.0000
hh"""	chr10:38409721-38410032(+)$1	311	9	14	15.0000
mmccc	chr4:2330640-2330998(-)$1	358	127	132	15.0000
!!eee	chr3:178976754-178977029(-)$1	275	27	32	15.0000
:::::	chr17:41246386-41246669(-)$1	283	18	23	15.0000
+++++	chr17:41246004-41246276(-)$1	272	8	13	15.0000
:::::	chr13:108518857-108519174(-)$1	317	94	99	15.0000
:::::	chr7:5107239-5107496(+)$1	257	86	91	15.0000
hhhhh	chr1:92853100-92853521(+)$1	421	196	201	15.0000
:::::	chr19:40539816-40540129(-)$1	313	31	36	15.0000
DDD::	chr18:9255527-9255771(+)$1	244	13	18	15.0000
dd!!c	chr6:111695581-111695840(-)$1	259	73	78	15.0000
A{FFF	chr1:203768747-203768965(+)$1	218	1	6	15.0000
ffmmm	chr19:58774400-58774683(+)$1	283	102	107	15.0000
####c	chrX:106307587-106307921(-)$1	334	79	84	15.0000
ccc!!	chr1:67724667-67724962(+)$1	295	168	173	15.0000
+++++	chr2:109086566-109086892(+)$1	326	96	101	15.0000
:::::	chr4:761155-761423(-)$1	268	60	65	15.0000
:::::	chr2:109087823-109088099(+)$1	276	253	258	15.0000
a[fff	chr6:3270301-3270562(+)$1	261	14	19	15.0000
>>>>>	chr4:761223-761500(-)$1	277	137	142	15.0000
cuuuu	chr6:111694880-111695209(-)$1	329	267	272	15.0000
ffff]	chr8:59473933-59474219(+)$1	286	150	155	15.0000
a!!dd	chr3:121414284-121414551(-)$1	267	13	18	15.0000
Dccc[	chr17:41245941-41246199(-)$1	258	207	212	15.0000
FFFFM	chr2:109088096-109088376(+)$1	280	121	126	15.0000
::fff	chr6:111694048-111694310(-)$1	262	162	167	15.0000
EEELL	chr3:15084401-15084659(-)$1	258	19	24	15.0000
ddnnn	chr10:38410483-38410729(+)$1	246	112	117	15.0000
crrrr	chr6:111694126-111694442(-)$1	316	294	299	15.0000
:::::	chr18:9255370-9255620(+)$1	250	170	175	15.0000
IIII:	chr12:54396516-54396819(+)$1	303	95	100	15.0000
:::::	chr17:41243693-41243933(-)$1	240	5	10	15.0000
qqqqq	chr19:11892263-11892581(+)$1	318	42	47	15.0000
==nnn	chr10:38407909-38408195(+)$1	286	231	236	15.0000

#DB
.))..	chr19:58772383-58772637(+)$1	1	199	204	15.0000
...((	chr6:111695121-111695407(-)$1	1	20	25	15.0000
....(	chrX:106307723-106307983(-)$1	1	141	146	15.0000
(((((	chr10:129897179-129897480(-)$1	1	28	33	15.0000
((((.	chr15:40913089-40913334(+)$1	1	80	85	15.0000
)....	chr1:203766418-203766703(+)$1	1	135	140	15.0000
.....	chr1:155451089-155451325(-)$1	1	86	91	15.0000
....(	chr14:76672762-76673016(+)$1	1	22	27	15.0000
(((..	chr15:40915230-40915535(+)$1	1	87	92	15.0000
.....	chr6:56966800-56967093(+)$1	1	49	54	15.0000
.((..	chr18:9255272-9255515(+)$1	1	152	157	15.0000
(((((	chr15:40913510-40913771(+)$1	1	130	135	15.0000
.....	chr3:121415970-121416260(-)$1	1	28	33	15.0000
(....	chr17:58326922-58327203(-)$1	1	117	122	15.0000
((...	chr10:38411874-38412224(+)$1	1	4	9	15.0000
))...	chr15:40914836-40915095(+)$1	1	126	131	15.0000
.....	chr15:40914895-40915219(+)$1	1	67	72	15.0000
.....	chr15:40914291-40914596(+)$1	1	9	14	15.0000
(.((.	chr17:41245419-41245721(-)$1	1	58	63	15.0000
((...	chr7:44923009-44923317(-)$1	1	248	253	15.0000
....(	chr1:155451356-155451640(-)$1	1	100	105	15.0000
.....	chr15:40913962-40914228(+)$1	1	47	52	15.0000
....)	chr2:101624056-101624371(+)$1	1	54	59	15.0000
((...	chr10:38409721-38410032(+)$1	1	9	14	15.0000
..)))	chr4:2330640-2330998(-)$1	1	127	132	15.0000
..(((	chr3:178976754-178977029(-)$1	1	27	32	15.0000
.....	chr17:41246386-41246669(-)$1	1	18	23	15.0000
.....	chr17:41246004-41246276(-)$1	1	8	13	15.0000
.....	chr13:108518857-108519174(-)$1	1	94	99	15.0000
.....	chr7:5107239-5107496(+)$1	1	86	91	15.0000
(((((	chr1:92853100-92853521(+)$1	1	196	201	15.0000
.....	chr19:40539816-40540129(-)$1	1	31	36	15.0000
(((..	chr18:9255527-9255771(+)$1	1	13	18	15.0000
((..(	chr6:111695581-111695840(-)$1	1	73	78	15.0000
(.(((	chr1:203768747-203768965(+)$1	1	1	6	15.0000
((...	chr19:58774400-58774683(+)$1	1	102	107	15.0000
....(	chrX:106307587-106307921(-)$1	1	79	84	15.0000
(((..	chr1:67724667-67724962(+)$1	1	168	173	15.0000
.....	chr2:109086566-109086892(+)$1	1	96	101	15.0000
.....	chr4:761155-761423(-)$1	1	60	65	15.0000
.....	chr2:109087823-109088099(+)$1	1	253	258	15.0000
(.(((	chr6:3270301-3270562(+)$1	1	14	19	15.0000
.....	chr4:761223-761500(-)$1	1	137	142	15.0000
(....	chr6:111694880-111695209(-)$1	1	267	272	15.0000
)))).	chr8:59473933-59474219(+)$1	1	150	155	15.0000
(..((	chr3:121414284-121414551(-)$1	1	13	18	15.0000
)(((.	chr17:41245941-41246199(-)$1	1	207	212	15.0000
((((.	chr2:109088096-109088376(+)$1	1	121	126	15.0000
..(((	chr6:111694048-111694310(-)$1	1	162	167	15.0000
(((..	chr3:15084401-15084659(-)$1	1	19	24	15.0000
((...	chr10:38410483-38410729(+)$1	1	112	117	15.0000
(....	chr6:111694126-111694442(-)$1	1	294	299	15.0000
.....	chr18:9255370-9255620(+)$1	1	170	175	15.0000
((((.	chr12:54396516-54396819(+)$1	1	95	100	15.0000
.....	chr17:41243693-41243933(-)$1	1	5	10	15.0000
.....	chr19:11892263-11892581(+)$1	1	42	47	15.0000
((...	chr10:38407909-38408195(+)$1	1	231	236	15.0000

#PSSM
A : 0.82	a : 0.17	
G : 0.82	g : 0.17	
A : 0.82	a : 0.17	
A : 0.80	a : 0.19	
A : 0.80	a : 0.19	

#score	855.0000000000005
#seq	57
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_CDS_m2_run2.nuc.txt

#NT
UUUCAUU	chr4:74321281-74321495(+)$1	214	89	96	13.9687
UUUCUGU	chr4:155533456-155533688(-)$1	232	78	85	13.3437
UGUCUUU	chr19:10794554-10794821(+)$1	267	21	28	12.8750
UUUGUUU	chr13:98654732-98655036(+)$1	304	86	93	13.5781
UUUCUUC	chr5:42807000-42807249(-)$1	249	19	26	12.7968
UUUCAUU	chr3:42660488-42660764(+)$1	276	183	190	13.9687
UUUCUUC	chr20:5159478-5159740(+)$1	262	8	15	12.7968
UUUAUUU	chr2:198284951-198285222(-)$1	271	107	114	14.2812
UUUCUGU	chr16:56973980-56974238(+)$1	258	92	99	13.3437
UUUCCUU	chr19:9940574-9940845(+)$1	271	56	63	13.6562
UUUCUGU	chr8:101717138-101717361(-)$1	223	64	71	13.3437
uuucuuu	chr19:18390715-18390967(-)$1	252	101	108	17.1718
UUUCAUU	chr19:13054581-13054827(+)$1	246	236	243	13.9687
UUUAUUU	chr4:74286708-74286911(+)$1	203	28	35	14.2812
UGUCUUU	chr14:73566372-73566623(+)$1	251	96	103	12.8750
UUUAUUU	chr15:85213072-85213393(-)$1	321	81	88	14.2812
UUUAUUU	chr4:155533582-155533791(-)$1	209	80	87	14.2812
UUUCUUU	chr14:97000813-97001047(+)$1	234	208	215	17.1718
UUUCUCU	chr2:86360303-86360600(+)$1	297	151	158	13.1875
UUUUUUU	chr4:74301916-74302147(+)$1	231	82	89	13.6562
UUUCAUU	chr4:26431509-26431771(+)$1	262	233	240	13.9687
UUUCCUU	chr14:23239357-23239615(+)$1	258	143	150	13.6562
UUUCUUU	chr9:19126204-19126479(-)$1	275	34	41	17.1718
UUUAUUU	chr4:110661921-110662157(-)$1	236	85	92	14.2812
UUUCUCU	chr10:70516163-70516430(+)$1	267	235	242	13.1875
UUUCAUU	chr19:13054627-13054874(+)$1	247	190	197	13.9687
UUUCCUU	chr12:69746909-69747122(+)$1	213	99	106	13.6562
uuuauuu	chr4:166418658-166418903(+)$1	245	203	210	14.2812
UUUCUUU	chr15:64430209-64430495(+)$1	286	150	157	17.1718
UUUCUUU	chr2:44184480-44184753(-)$1	273	151	158	17.1718
UUUAUUU	chr14:31067517-31067806(+)$1	289	92	99	14.2812
UUUCUGU	chr4:107168340-107168629(-)$1	289	71	78	13.3437
UUUAUUU	chr4:155533591-155533812(-)$1	221	101	108	14.2812
UUUCUUU	chr2:170668193-170668461(+)$1	268	234	241	17.1718
UUUAUUU	chr12:53860997-53861244(+)$1	247	97	104	14.2812
UUUCUUU	chr10:101563802-101564104(+)$1	302	260	267	17.1718
UUUAUUU	chr11:33163020-33163287(-)$1	267	83	90	14.2812
UUUCUUU	chr16:2820923-2821181(+)$1	258	97	104	17.1718
UUUCUUC	chr1:33252379-33252660(-)$1	281	134	141	12.7968
UUUCUUU	chr4:74321319-74321546(+)$1	227	216	223	17.1718
UUUAUUU	chr12:72004233-72004553(-)$1	320	95	102	14.2812
UUUCUUU	chr6:142630669-142630952(+)$1	283	0	7	17.1718
UUUCUUU	chr1:78425821-78426115(-)$1	294	156	163	17.1718
UUUCAUU	chrX:128582142-128582400(-)$1	258	8	15	13.9687
UUUCUUU	chr17:62496623-62496872(-)$1	249	93	100	17.1718
UUUCUGU	chr17:39846346-39846612(+)$1	266	234	241	13.3437
UUUCCUU	chr12:69746941-69747182(+)$1	241	67	74	13.6562
uuuuuuu	chr2:58389959-58390236(-)$1	277	6	13	13.6562
UGUCUUU	chr2:85823689-85824000(+)$1	311	272	279	12.8750
UUUCUCU	chr4:120221389-120221603(-)$1	214	87	94	13.1875
UUUCAUU	chr4:74321295-74321509(+)$1	214	75	82	13.9687
UCUCUUU	chr17:37009252-37009459(-)$1	207	64	71	12.6406
UUUCAUU	chr4:74321268-74321481(+)$1	213	102	109	13.9687
UGUCUUU	chr4:39459823-39460087(-)$1	264	87	94	12.8750
UUUCUUU	chr10:103557545-103557823(-)$1	278	212	219	17.1718
UUUCUAU	chr2:120885116-120885368(+)$1	252	129	136	13.1093
UUUCUUU	chr17:56082986-56083244(-)$1	258	103	110	17.1718
UUUCCUU	chr12:69746922-69747141(+)$1	219	86	93	13.6562
UUUCUAU	chr11:61572016-61572282(-)$1	266	92	99	13.1093
UUUCUUU	chr2:219093435-219093738(+)$1	303	91	98	17.1718
UUUCUUC	chr11:17153282-17153580(-)$1	298	88	95	12.7968
UUUUUUU	chr4:74301910-74302116(+)$1	206	88	95	13.6562
UUUCAUU	chr4:74321309-74321518(+)$1	209	61	68	13.9687

#otherMatches

#Struct PSSM
dd[a!!d	chr1:33146018-33146294(+)$1	276	56	63	13.5781
nnnneee	chr4:74321281-74321495(+)$1	214	89	96	13.9687
^^eeeee	chr4:155533456-155533688(-)$1	232	78	85	13.3437
####eee	chr19:10794554-10794821(+)$1	267	21	28	12.8750
oooooee	chr13:98654732-98655036(+)$1	304	86	93	13.5781
Hffffff	chr5:42807000-42807249(-)$1	249	19	26	12.7968
ff[dddd	chr3:42660488-42660764(+)$1	276	183	190	13.9687
::ccc[c	chr20:5159478-5159740(+)$1	262	8	15	12.7968
2iiiiii	chr2:198284951-198285222(-)$1	271	107	114	14.2812
dddd]dd	chr16:56973980-56974238(+)$1	258	92	99	13.3437
::::fff	chr19:9940574-9940845(+)$1	271	56	63	13.6562
c::::::	chr8:101717138-101717361(-)$1	223	64	71	13.3437
====mmm	chr19:18390715-18390967(-)$1	252	101	108	17.1718
DDDA}EE	chr19:13054581-13054827(+)$1	246	236	243	13.9687
f"""fff	chr4:74286708-74286911(+)$1	203	28	35	14.2812
iiiiiii	chr14:73566372-73566623(+)$1	251	96	103	12.8750
cc]ccc2	chr15:85213072-85213393(-)$1	321	81	88	14.2812
hhhhhhh	chr4:155533582-155533791(-)$1	209	80	87	14.2812
:::::::	chr14:97000813-97001047(+)$1	234	208	215	17.1718
ee22ccc	chr2:86360303-86360600(+)$1	297	151	158	13.1875
$$$$ddd	chr4:74301916-74302147(+)$1	231	82	89	13.6562
HHHH}BB	chr4:26431509-26431771(+)$1	262	233	240	13.9687
f))))))	chr14:23239357-23239615(+)$1	258	143	150	13.6562
ooooooc	chr9:19126204-19126479(-)$1	275	34	41	17.1718
qqqqeee	chr4:110661921-110662157(-)$1	236	85	92	14.2812
JJJ\\\\	chr10:70516163-70516430(+)$1	267	235	242	13.1875
::JJJJJ	chr19:13054627-13054874(+)$1	247	190	197	13.9687
fff::GG	chr12:69746909-69747122(+)$1	213	99	106	13.6562
CIIIIII	chr4:166418658-166418903(+)$1	245	203	210	14.2812
ooooood	chr15:64430209-64430495(+)$1	286	150	157	17.1718
JJJ::::	chr2:44184480-44184753(-)$1	273	151	158	17.1718
a!!cccm	chr14:31067517-31067806(+)$1	289	92	99	14.2812
hhhhhh"	chr4:107168340-107168629(-)$1	289	71	78	13.3437
^^^^^^^	chr4:155533591-155533812(-)$1	221	101	108	14.2812
eGGGGGG	chr2:170668193-170668461(+)$1	268	234	241	17.1718
hhhhh22	chr12:53860997-53861244(+)$1	247	97	104	14.2812
qffffff	chr10:101563802-101564104(+)$1	302	260	267	17.1718
eeee[cc	chr11:33163020-33163287(-)$1	267	83	90	14.2812
e[ccc[g	chr16:2820923-2821181(+)$1	258	97	104	17.1718
rrrrrrr	chr1:33252379-33252660(-)$1	281	134	141	12.7968
EEEE}FF	chr4:74321319-74321546(+)$1	227	216	223	17.1718
NNNNIII	chr12:72004233-72004553(-)$1	320	95	102	14.2812
::BBLLL	chr6:142630669-142630952(+)$1	283	0	7	17.1718
rrrrrrr	chr1:78425821-78426115(-)$1	294	156	163	17.1718
eeeeenn	chrX:128582142-128582400(-)$1	258	8	15	13.9687
ee[eeee	chr17:62496623-62496872(-)$1	249	93	100	17.1718
:iiiiii	chr17:39846346-39846612(+)$1	266	234	241	13.3437
fff::::	chr12:69746941-69747182(+)$1	241	67	74	13.6562
:::::::	chr2:58389959-58390236(-)$1	277	6	13	13.6562
rrrrrrr	chr2:85823689-85824000(+)$1	311	272	279	12.8750
!!eeeee	chr4:120221389-120221603(-)$1	214	87	94	13.1875
:eeeeen	chr4:74321295-74321509(+)$1	214	75	82	13.9687
^^^^^^^	chr17:37009252-37009459(-)$1	207	64	71	12.6406
nnnneee	chr4:74321268-74321481(+)$1	213	102	109	13.9687
neeeee]	chr4:39459823-39460087(-)$1	264	87	94	12.8750
cccnnnn	chr10:103557545-103557823(-)$1	278	212	219	17.1718
cc]a]ii	chr2:120885116-120885368(+)$1	252	129	136	13.1093
!ddddoo	chr17:56082986-56083244(-)$1	258	103	110	17.1718
fff::GG	chr12:69746922-69747141(+)$1	219	86	93	13.6562
eeeee!!	chr11:61572016-61572282(-)$1	266	92	99	13.1093
eeee]ff	chr2:219093435-219093738(+)$1	303	91	98	17.1718
"cccfff	chr11:17153282-17153580(-)$1	298	88	95	12.7968
:::::::	chr4:74301910-74302116(+)$1	206	88	95	13.6562
nnnneee	chr4:74321309-74321518(+)$1	209	61	68	13.9687

#DB
((.(..(	chr1:33146018-33146294(+)$1	1	56	63	13.5781
....)))	chr4:74321281-74321495(+)$1	1	89	96	13.9687
..)))))	chr4:155533456-155533688(-)$1	1	78	85	13.3437
....(((	chr19:10794554-10794821(+)$1	1	21	28	12.8750
.....))	chr13:98654732-98655036(+)$1	1	86	93	13.5781
(((((((	chr5:42807000-42807249(-)$1	1	19	26	12.7968
((.((((	chr3:42660488-42660764(+)$1	1	183	190	13.9687
..(((.(	chr20:5159478-5159740(+)$1	1	8	15	12.7968
.))))))	chr2:198284951-198285222(-)$1	1	107	114	14.2812
)))).))	chr16:56973980-56974238(+)$1	1	92	99	13.3437
....(((	chr19:9940574-9940845(+)$1	1	56	63	13.6562
)......	chr8:101717138-101717361(-)$1	1	64	71	13.3437
((((...	chr19:18390715-18390967(-)$1	1	101	108	17.1718
)))).))	chr19:13054581-13054827(+)$1	1	236	243	13.9687
(...(((	chr4:74286708-74286911(+)$1	1	28	35	14.2812
(((((((	chr14:73566372-73566623(+)$1	1	96	103	12.8750
)).))).	chr15:85213072-85213393(-)$1	1	81	88	14.2812
(((((((	chr4:155533582-155533791(-)$1	1	80	87	14.2812
.......	chr14:97000813-97001047(+)$1	1	208	215	17.1718
))..)))	chr2:86360303-86360600(+)$1	1	151	158	13.1875
....(((	chr4:74301916-74302147(+)$1	1	82	89	13.6562
)))).))	chr4:26431509-26431771(+)$1	1	233	240	13.9687
(......	chr14:23239357-23239615(+)$1	1	143	150	13.6562
......)	chr9:19126204-19126479(-)$1	1	34	41	17.1718
....)))	chr4:110661921-110662157(-)$1	1	85	92	14.2812
)))....	chr10:70516163-70516430(+)$1	1	235	242	13.1875
..)))))	chr19:13054627-13054874(+)$1	1	190	197	13.9687
)))..))	chr12:69746909-69747122(+)$1	1	99	106	13.6562
)))))))	chr4:166418658-166418903(+)$1	1	203	210	14.2812
......)	chr15:64430209-64430495(+)$1	1	150	157	17.1718
(((....	chr2:44184480-44184753(-)$1	1	151	158	17.1718
(..(((.	chr14:31067517-31067806(+)$1	1	92	99	14.2812
((((((.	chr4:107168340-107168629(-)$1	1	71	78	13.3437
.......	chr4:155533591-155533812(-)$1	1	101	108	14.2812
)))))))	chr2:170668193-170668461(+)$1	1	234	241	17.1718
)))))..	chr12:53860997-53861244(+)$1	1	97	104	14.2812
.))))))	chr10:101563802-101564104(+)$1	1	260	267	17.1718
((((.((	chr11:33163020-33163287(-)$1	1	83	90	14.2812
(.(((.(	chr16:2820923-2821181(+)$1	1	97	104	17.1718
.......	chr1:33252379-33252660(-)$1	1	134	141	12.7968
)))).))	chr4:74321319-74321546(+)$1	1	216	223	17.1718
....(((	chr12:72004233-72004553(-)$1	1	95	102	14.2812
..((...	chr6:142630669-142630952(+)$1	1	0	7	17.1718
.......	chr1:78425821-78426115(-)$1	1	156	163	17.1718
(((((..	chrX:128582142-128582400(-)$1	1	8	15	13.9687
((.((((	chr17:62496623-62496872(-)$1	1	93	100	17.1718
.((((((	chr17:39846346-39846612(+)$1	1	234	241	13.3437
)))....	chr12:69746941-69747182(+)$1	1	67	74	13.6562
.......	chr2:58389959-58390236(-)$1	1	6	13	13.6562
.......	chr2:85823689-85824000(+)$1	1	272	279	12.8750
..(((((	chr4:120221389-120221603(-)$1	1	87	94	13.1875
.(((((.	chr4:74321295-74321509(+)$1	1	75	82	13.9687
.......	chr17:37009252-37009459(-)$1	1	64	71	12.6406
....)))	chr4:74321268-74321481(+)$1	1	102	109	13.9687
.))))).	chr4:39459823-39460087(-)$1	1	87	94	12.8750
(((....	chr10:103557545-103557823(-)$1	1	212	219	17.1718
)).).))	chr2:120885116-120885368(+)$1	1	129	136	13.1093
.((((..	chr17:56082986-56083244(-)$1	1	103	110	17.1718
)))..))	chr12:69746922-69747141(+)$1	1	86	93	13.6562
(((((..	chr11:61572016-61572282(-)$1	1	92	99	13.1093
)))).))	chr2:219093435-219093738(+)$1	1	91	98	17.1718
.((((((	chr11:17153282-17153580(-)$1	1	88	95	12.7968
.......	chr4:74301910-74302116(+)$1	1	88	95	13.6562
....)))	chr4:74321309-74321518(+)$1	1	61	68	13.9687

#PSSM
U : 0.95	u : 0.04	
U : 0.87	G : 0.06	u : 0.04	C : 0.01	
U : 0.95	u : 0.04	
C : 0.73	A : 0.15	G : 0.03	U : 0.03	c : 0.01	a : 0.01	u : 0.01	
U : 0.73	A : 0.14	C : 0.07	u : 0.04	
U : 0.79	G : 0.07	u : 0.04	C : 0.04	A : 0.03	
U : 0.89	C : 0.06	u : 0.04	

#score	924.625
#seq	64
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_UTR_m3_run1.nuc.txt

#NT
UUCU	chr2:242207728-242208004(-)$1	276	1	5	12.0000
UUCU	chr6:13617955-13618207(+)$1	252	87	91	12.0000
UUCU	chr4:106394907-106395151(-)$1	244	94	98	12.0000
UUCU	chr7:124537012-124537352(-)$1	340	65	69	12.0000
UUCU	chr11:57079787-57080113(-)$1	326	134	138	12.0000
UUCU	chr6:111652719-111653029(-)$1	310	26	30	12.0000
UUCU	chr9:34647440-34647725(+)$1	285	25	29	12.0000
UUCU	chr17:73695841-73696091(+)$1	250	6	10	12.0000
UUCU	chr2:198284743-198284986(-)$1	243	21	25	12.0000
UUCU	chr1:220383955-220384261(-)$1	306	107	111	12.0000
UUCU	chr17:73236649-73236951(-)$1	302	282	286	12.0000
UUCU	chr17:7480972-7481212(+)$1	240	161	165	12.0000
UUCU	chr10:22616453-22616708(+)$1	255	24	28	12.0000
UUCU	chr16:4494620-4494916(+)$1	296	18	22	12.0000
UUCU	chr5:150277425-150277724(-)$1	299	156	160	12.0000
UUCU	chr19:13060116-13060361(+)$1	245	190	194	12.0000
UUCU	chr1:40998677-40999010(+)$1	333	4	8	12.0000
UUCU	chr12:50386038-50386284(-)$1	246	50	54	12.0000
UUCU	chr6:82901330-82901624(-)$1	294	161	165	12.0000
UUCU	chr18:19243883-19244136(-)$1	253	19	23	12.0000
UUCU	chr22:19124661-19124944(-)$1	283	234	238	12.0000
UUCU	chr19:48624133-48624375(-)$1	242	67	71	12.0000
UUCU	chr1:19444169-19444422(-)$1	253	7	11	12.0000
UUCU	chr3:195791058-195791310(-)$1	252	109	113	12.0000
UUCU	chr17:62498103-62498346(-)$1	243	58	62	12.0000
UUCU	chr16:23403450-23403763(-)$1	313	122	126	12.0000
UUCU	chr17:41107707-41107965(-)$1	258	31	35	12.0000
UUCU	chr7:151892726-151893109(-)$1	383	41	45	12.0000
UUCU	chr7:23385311-23385671(-)$1	360	239	243	12.0000
UUCU	chr19:12790414-12790640(-)$1	226	100	104	12.0000
UUCU	chr3:25824427-25824742(-)$1	315	125	129	12.0000
UUCU	chr9:75766723-75766973(+)$1	250	81	85	12.0000
UUCU	chr2:38976480-38976710(-)$1	230	70	74	12.0000
UUCU	chr19:33133895-33134176(-)$1	281	20	24	12.0000
UUCU	chr4:174255052-174255297(-)$1	245	74	78	12.0000
UUCU	chr12:108931244-108931500(-)$1	256	10	14	12.0000
UUCU	chr19:59068180-59068391(-)$1	211	31	35	12.0000
UUCU	chr16:24829916-24830155(+)$1	239	177	181	12.0000
UUCU	chr11:118926145-118926401(-)$1	256	67	71	12.0000
UUCU	chr22:22899822-22900027(-)$1	205	13	17	12.0000
UUCU	chr8:144911028-144911283(-)$1	255	202	206	12.0000
UUCU	chr1:27658470-27658771(+)$1	301	14	18	12.0000
UUCU	chr9:95061020-95061290(-)$1	270	25	29	12.0000
UUCU	chr7:151833888-151834139(-)$1	251	101	105	12.0000
UUCU	chr2:198284900-198285126(-)$1	226	59	63	12.0000
UUCU	chr14:76662304-76662568(+)$1	264	169	173	12.0000
UUCU	chr17:45266390-45266642(-)$1	252	143	147	12.0000
UUCU	chr4:89198118-89198408(-)$1	290	63	67	12.0000
UUCU	chr5:179228170-179228435(-)$1	265	253	257	12.0000
UUCU	chr19:9251145-9251502(+)$1	357	1	5	12.0000
UUCU	chr15:37388533-37388797(-)$1	264	0	4	12.0000
UUCU	chr16:30537241-30537528(-)$1	287	140	144	12.0000
UUCU	chr7:23226622-23226906(+)$1	284	35	39	12.0000
UUCU	chr6:135314702-135315010(-)$1	308	127	131	12.0000
UUCU	chr17:26874517-26874779(-)$1	262	101	105	12.0000
UUCU	chrX:140992497-140992773(+)$1	276	239	243	12.0000
UUCU	chr5:176862009-176862309(+)$1	300	5	9	12.0000
UUCU	chr11:95523801-95524058(+)$1	257	87	91	12.0000
UUCU	chr2:54112670-54112960(-)$1	290	85	89	12.0000
UUCU	chr6:105239222-105239505(-)$1	283	269	273	12.0000
UUCU	chr3:42681119-42681386(+)$1	267	133	137	12.0000
UUCU	chr6:74176169-74176459(+)$1	290	30	34	12.0000
UUCU	chr14:20940512-20940851(+)$1	339	38	42	12.0000
UUCU	chr8:141569318-141569603(-)$1	285	188	192	12.0000
UUCU	chr5:138609740-138609999(+)$1	259	181	185	12.0000
UUCU	chr13:53227084-53227444(+)$1	360	19	23	12.0000
UUCU	chr12:124092104-124092421(+)$1	317	30	34	12.0000
UUCU	chr5:888982-889285(-)$1	303	188	192	12.0000
UUCU	chr1:207510620-207510924(+)$1	304	36	40	12.0000
UUCU	chr8:27288491-27288765(+)$1	274	141	145	12.0000
UUCU	chr11:2970345-2970565(-)$1	220	27	31	12.0000
UUCU	chr3:98309329-98309606(-)$1	277	264	268	12.0000
UUCU	chr1:33135040-33135306(+)$1	266	3	7	12.0000
UUCU	chr17:2227709-2228026(-)$1	317	31	35	12.0000
UUCU	chr5:169483659-169483941(+)$1	282	29	33	12.0000
UUCU	chr17:8064578-8064857(-)$1	279	122	126	12.0000
UUCU	chr12:124092029-124092304(+)$1	275	105	109	12.0000
UUCU	chr17:73221823-73222091(+)$1	268	12	16	12.0000
UUCU	chr18:43483696-43484067(-)$1	371	339	343	12.0000
UUCU	chr9:116137650-116137926(-)$1	276	61	65	12.0000
UUCU	chr9:140347364-140347614(-)$1	250	199	203	12.0000
UUCU	chr22:19375877-19376109(-)$1	232	113	117	12.0000

#otherMatches

#Struct PSSM
iiii	chr8:117863913-117864201(-)$1	288	190	194	12.0000
::BB	chr2:242207728-242208004(-)$1	276	1	5	12.0000
fff!	chr6:13617955-13618207(+)$1	252	87	91	12.0000
b[cc	chr4:106394907-106395151(-)$1	244	94	98	12.0000
oooo	chr7:124537012-124537352(-)$1	340	65	69	12.0000
ffff	chr11:57079787-57080113(-)$1	326	134	138	12.0000
DD{F	chr6:111652719-111653029(-)$1	310	26	30	12.0000
%%%%	chr9:34647440-34647725(+)$1	285	25	29	12.0000
GGGG	chr17:73695841-73696091(+)$1	250	6	10	12.0000
gggg	chr2:198284743-198284986(-)$1	243	21	25	12.0000
ff::	chr1:220383955-220384261(-)$1	306	107	111	12.0000
cccq	chr17:73236649-73236951(-)$1	302	282	286	12.0000
:eee	chr17:7480972-7481212(+)$1	240	161	165	12.0000
ssss	chr10:22616453-22616708(+)$1	255	24	28	12.0000
(((g	chr16:4494620-4494916(+)$1	296	18	22	12.0000
4444	chr5:150277425-150277724(-)$1	299	156	160	12.0000
EEEE	chr19:13060116-13060361(+)$1	245	190	194	12.0000
::::	chr1:40998677-40999010(+)$1	333	4	8	12.0000
iiii	chr12:50386038-50386284(-)$1	246	50	54	12.0000
!ddd	chr6:82901330-82901624(-)$1	294	161	165	12.0000
iiii	chr18:19243883-19244136(-)$1	253	19	23	12.0000
FFFF	chr22:19124661-19124944(-)$1	283	234	238	12.0000
__EE	chr19:48624133-48624375(-)$1	242	67	71	12.0000
::dd	chr1:19444169-19444422(-)$1	253	7	11	12.0000
lccc	chr3:195791058-195791310(-)$1	252	109	113	12.0000
FF::	chr17:62498103-62498346(-)$1	243	58	62	12.0000
::::	chr16:23403450-23403763(-)$1	313	122	126	12.0000
eeee	chr17:41107707-41107965(-)$1	258	31	35	12.0000
:iii	chr7:151892726-151893109(-)$1	383	41	45	12.0000
IIII	chr7:23385311-23385671(-)$1	360	239	243	12.0000
IIII	chr19:12790414-12790640(-)$1	226	100	104	12.0000
pppp	chr3:25824427-25824742(-)$1	315	125	129	12.0000
hppp	chr9:75766723-75766973(+)$1	250	81	85	12.0000
ssss	chr2:38976480-38976710(-)$1	230	70	74	12.0000
]ddd	chr19:33133895-33134176(-)$1	281	20	24	12.0000
eeee	chr4:174255052-174255297(-)$1	245	74	78	12.0000
====	chr12:108931244-108931500(-)$1	256	10	14	12.0000
hhhh	chr19:59068180-59068391(-)$1	211	31	35	12.0000
ffff	chr16:24829916-24830155(+)$1	239	177	181	12.0000
>>>>	chr11:118926145-118926401(-)$1	256	67	71	12.0000
dd[f	chr22:22899822-22900027(-)$1	205	13	17	12.0000
eeee	chr8:144911028-144911283(-)$1	255	202	206	12.0000
EEEE	chr1:27658470-27658771(+)$1	301	14	18	12.0000
gggg	chr9:95061020-95061290(-)$1	270	25	29	12.0000
2ccc	chr7:151833888-151834139(-)$1	251	101	105	12.0000
dd$$	chr2:198284900-198285126(-)$1	226	59	63	12.0000
ffff	chr14:76662304-76662568(+)$1	264	169	173	12.0000
]bbe	chr17:45266390-45266642(-)$1	252	143	147	12.0000
fddd	chr4:89198118-89198408(-)$1	290	63	67	12.0000
iiii	chr5:179228170-179228435(-)$1	265	253	257	12.0000
:::F	chr19:9251145-9251502(+)$1	357	1	5	12.0000
::::	chr15:37388533-37388797(-)$1	264	0	4	12.0000
ccc[	chr16:30537241-30537528(-)$1	287	140	144	12.0000
====	chr7:23226622-23226906(+)$1	284	35	39	12.0000
ssss	chr6:135314702-135315010(-)$1	308	127	131	12.0000
cddd	chr17:26874517-26874779(-)$1	262	101	105	12.0000
HHHH	chrX:140992497-140992773(+)$1	276	239	243	12.0000
EEE:	chr5:176862009-176862309(+)$1	300	5	9	12.0000
]ccc	chr11:95523801-95524058(+)$1	257	87	91	12.0000
cccc	chr2:54112670-54112960(-)$1	290	85	89	12.0000
ccc:	chr6:105239222-105239505(-)$1	283	269	273	12.0000
eeee	chr3:42681119-42681386(+)$1	267	133	137	12.0000
gggg	chr6:74176169-74176459(+)$1	290	30	34	12.0000
hh!!	chr14:20940512-20940851(+)$1	339	38	42	12.0000
gggg	chr8:141569318-141569603(-)$1	285	188	192	12.0000
H}BB	chr5:138609740-138609999(+)$1	259	181	185	12.0000
::::	chr13:53227084-53227444(+)$1	360	19	23	12.0000
QQQQ	chr12:124092104-124092421(+)$1	317	30	34	12.0000
66bb	chr5:888982-889285(-)$1	303	188	192	12.0000
###d	chr1:207510620-207510924(+)$1	304	36	40	12.0000
::::	chr8:27288491-27288765(+)$1	274	141	145	12.0000
::::	chr11:2970345-2970565(-)$1	220	27	31	12.0000
HHEE	chr3:98309329-98309606(-)$1	277	264	268	12.0000
JJJJ	chr1:33135040-33135306(+)$1	266	3	7	12.0000
gggg	chr17:2227709-2228026(-)$1	317	31	35	12.0000
>>>>	chr5:169483659-169483941(+)$1	282	29	33	12.0000
!!gg	chr17:8064578-8064857(-)$1	279	122	126	12.0000
tttt	chr12:124092029-124092304(+)$1	275	105	109	12.0000
:::e	chr17:73221823-73222091(+)$1	268	12	16	12.0000
eee:	chr18:43483696-43484067(-)$1	371	339	343	12.0000
::::	chr9:116137650-116137926(-)$1	276	61	65	12.0000
====	chr9:140347364-140347614(-)$1	250	199	203	12.0000
llff	chr22:19375877-19376109(-)$1	232	113	117	12.0000

#DB
))))	chr8:117863913-117864201(-)$1	1	190	194	12.0000
..((	chr2:242207728-242208004(-)$1	1	1	5	12.0000
(((.	chr6:13617955-13618207(+)$1	1	87	91	12.0000
(.((	chr4:106394907-106395151(-)$1	1	94	98	12.0000
....	chr7:124537012-124537352(-)$1	1	65	69	12.0000
((((	chr11:57079787-57080113(-)$1	1	134	138	12.0000
((.(	chr6:111652719-111653029(-)$1	1	26	30	12.0000
....	chr9:34647440-34647725(+)$1	1	25	29	12.0000
((((	chr17:73695841-73696091(+)$1	1	6	10	12.0000
((((	chr2:198284743-198284986(-)$1	1	21	25	12.0000
))..	chr1:220383955-220384261(-)$1	1	107	111	12.0000
(((.	chr17:73236649-73236951(-)$1	1	282	286	12.0000
.(((	chr17:7480972-7481212(+)$1	1	161	165	12.0000
....	chr10:22616453-22616708(+)$1	1	24	28	12.0000
...(	chr16:4494620-4494916(+)$1	1	18	22	12.0000
....	chr5:150277425-150277724(-)$1	1	156	160	12.0000
))))	chr19:13060116-13060361(+)$1	1	190	194	12.0000
....	chr1:40998677-40999010(+)$1	1	4	8	12.0000
))))	chr12:50386038-50386284(-)$1	1	50	54	12.0000
.(((	chr6:82901330-82901624(-)$1	1	161	165	12.0000
((((	chr18:19243883-19244136(-)$1	1	19	23	12.0000
))))	chr22:19124661-19124944(-)$1	1	234	238	12.0000
..))	chr19:48624133-48624375(-)$1	1	67	71	12.0000
..((	chr1:19444169-19444422(-)$1	1	7	11	12.0000
.)))	chr3:195791058-195791310(-)$1	1	109	113	12.0000
((..	chr17:62498103-62498346(-)$1	1	58	62	12.0000
....	chr16:23403450-23403763(-)$1	1	122	126	12.0000
))))	chr17:41107707-41107965(-)$1	1	31	35	12.0000
.(((	chr7:151892726-151893109(-)$1	1	41	45	12.0000
((((	chr7:23385311-23385671(-)$1	1	239	243	12.0000
))))	chr19:12790414-12790640(-)$1	1	100	104	12.0000
....	chr3:25824427-25824742(-)$1	1	125	129	12.0000
(...	chr9:75766723-75766973(+)$1	1	81	85	12.0000
....	chr2:38976480-38976710(-)$1	1	70	74	12.0000
.)))	chr19:33133895-33134176(-)$1	1	20	24	12.0000
((((	chr4:174255052-174255297(-)$1	1	74	78	12.0000
((((	chr12:108931244-108931500(-)$1	1	10	14	12.0000
((((	chr19:59068180-59068391(-)$1	1	31	35	12.0000
((((	chr16:24829916-24830155(+)$1	1	177	181	12.0000
....	chr11:118926145-118926401(-)$1	1	67	71	12.0000
((.(	chr22:22899822-22900027(-)$1	1	13	17	12.0000
))))	chr8:144911028-144911283(-)$1	1	202	206	12.0000
((((	chr1:27658470-27658771(+)$1	1	14	18	12.0000
((((	chr9:95061020-95061290(-)$1	1	25	29	12.0000
.)))	chr7:151833888-151834139(-)$1	1	101	105	12.0000
((..	chr2:198284900-198285126(-)$1	1	59	63	12.0000
))))	chr14:76662304-76662568(+)$1	1	169	173	12.0000
.)))	chr17:45266390-45266642(-)$1	1	143	147	12.0000
((((	chr4:89198118-89198408(-)$1	1	63	67	12.0000
))))	chr5:179228170-179228435(-)$1	1	253	257	12.0000
...(	chr19:9251145-9251502(+)$1	1	1	5	12.0000
....	chr15:37388533-37388797(-)$1	1	0	4	12.0000
(((.	chr16:30537241-30537528(-)$1	1	140	144	12.0000
((((	chr7:23226622-23226906(+)$1	1	35	39	12.0000
....	chr6:135314702-135315010(-)$1	1	127	131	12.0000
)(((	chr17:26874517-26874779(-)$1	1	101	105	12.0000
))))	chrX:140992497-140992773(+)$1	1	239	243	12.0000
(((.	chr5:176862009-176862309(+)$1	1	5	9	12.0000
.)))	chr11:95523801-95524058(+)$1	1	87	91	12.0000
))))	chr2:54112670-54112960(-)$1	1	85	89	12.0000
))).	chr6:105239222-105239505(-)$1	1	269	273	12.0000
))))	chr3:42681119-42681386(+)$1	1	133	137	12.0000
((((	chr6:74176169-74176459(+)$1	1	30	34	12.0000
((..	chr14:20940512-20940851(+)$1	1	38	42	12.0000
))))	chr8:141569318-141569603(-)$1	1	188	192	12.0000
).))	chr5:138609740-138609999(+)$1	1	181	185	12.0000
....	chr13:53227084-53227444(+)$1	1	19	23	12.0000
....	chr12:124092104-124092421(+)$1	1	30	34	12.0000
..))	chr5:888982-889285(-)$1	1	188	192	12.0000
...(	chr1:207510620-207510924(+)$1	1	36	40	12.0000
....	chr8:27288491-27288765(+)$1	1	141	145	12.0000
....	chr11:2970345-2970565(-)$1	1	27	31	12.0000
))))	chr3:98309329-98309606(-)$1	1	264	268	12.0000
((((	chr1:33135040-33135306(+)$1	1	3	7	12.0000
((((	chr17:2227709-2228026(-)$1	1	31	35	12.0000
....	chr5:169483659-169483941(+)$1	1	29	33	12.0000
..((	chr17:8064578-8064857(-)$1	1	122	126	12.0000
....	chr12:124092029-124092304(+)$1	1	105	109	12.0000
...(	chr17:73221823-73222091(+)$1	1	12	16	12.0000
))).	chr18:43483696-43484067(-)$1	1	339	343	12.0000
....	chr9:116137650-116137926(-)$1	1	61	65	12.0000
((((	chr9:140347364-140347614(-)$1	1	199	203	12.0000
..))	chr22:19375877-19376109(-)$1	1	113	117	12.0000

#PSSM
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	

#score	996.0000000000005
#seq	83
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_transcript_m3_run2.nuc.txt

#NT
UGGG	chr17:40351542-40351835(-)$1	293	8	12	12.0000
UGGG	chr4:1241205-1241466(-)$1	261	63	67	12.0000
UGGG	chr22:47401881-47402120(+)$1	239	153	157	12.0000
uggg	chr5:154136582-154136839(+)$1	257	44	48	12.0000
UGGG	chr19:2270119-2270388(+)$1	269	33	37	12.0000
UGGG	chr3:33481515-33481766(-)$1	251	0	4	12.0000
UGGG	chr21:44268273-44268604(-)$1	331	207	211	12.0000
UGGG	chr19:14552003-14552274(+)$1	271	126	130	12.0000
UGGG	chr16:88532249-88532497(+)$1	248	93	97	12.0000
UGGG	chr19:2270068-2270303(+)$1	235	20	24	12.0000
UGGG	chr20:62371657-62371968(+)$1	311	82	86	12.0000
UGGG	chr20:5986967-5987238(+)$1	271	18	22	12.0000
UGGG	chr22:50024047-50024270(-)$1	223	21	25	12.0000
UGGG	chr5:139059858-139060154(+)$1	296	165	169	12.0000
uggg	chr17:7154514-7154776(-)$1	262	117	121	12.0000
UGGG	chr15:91445894-91446143(+)$1	249	74	78	12.0000
UGGG	chr17:75211498-75211788(+)$1	290	58	62	12.0000
UGGG	chr22:23624016-23624273(+)$1	257	7	11	12.0000
UGGG	chr22:50024118-50024353(-)$1	235	104	108	12.0000
UGGG	chr19:4035262-4035559(+)$1	297	31	35	12.0000
UGGG	chr13:92000498-92000806(+)$1	308	0	4	12.0000
UGGG	chr20:61568600-61568959(-)$1	359	72	76	12.0000
UGGG	chr22:50039285-50039528(-)$1	243	34	38	12.0000
UGGG	chr1:12644358-12644619(-)$1	261	65	69	12.0000
UGGG	chr19:34876796-34877037(+)$1	241	99	103	12.0000
UGGG	chr2:216239985-216240211(-)$1	226	37	41	12.0000
UGGG	chr19:6697304-6697566(-)$1	262	221	225	12.0000
UGGG	chr16:89020544-89020867(-)$1	323	3	7	12.0000
UGGG	chrM:1234-1445(+)$1	211	126	130	12.0000
uggg	chr4:899122-899376(-)$1	254	1	5	12.0000
UGGG	chr20:61568546-61568767(-)$1	221	75	79	12.0000
uggg	chr12:124951158-124951424(-)$1	266	103	107	12.0000
UGGG	chr19:34882747-34883039(+)$1	292	30	34	12.0000
UGGG	chr4:1237230-1237472(-)$1	242	74	78	12.0000
UGGG	chr1:230839955-230840180(-)$1	225	8	12	12.0000
UGGG	chr21:44395291-44395544(+)$1	253	95	99	12.0000
uggg	chr1:1284352-1284629(-)$1	277	31	35	12.0000
uggg	chr3:20081790-20082102(+)$1	312	51	55	12.0000
UGGG	chr9:19380090-19380332(-)$1	242	171	175	12.0000
UGGG	chr16:593839-594077(+)$1	238	116	120	12.0000
UGGG	chr8:101321711-101322026(-)$1	315	69	73	12.0000
UGGG	chrM:1341-1544(+)$1	203	19	23	12.0000
UGGG	chr19:16187748-16187998(+)$1	250	13	17	12.0000
UGGG	chr16:89980254-89980515(+)$1	261	6	10	12.0000
UGGG	chr6:157733798-157734039(-)$1	241	2	6	12.0000
UGGG	chr1:228675175-228675445(+)$1	270	131	135	12.0000
UGGG	chr1:230841578-230841799(-)$1	221	150	154	12.0000
UGGG	chr9:136132897-136133186(-)$1	289	62	66	12.0000
UGGG	chr22:50034084-50034320(-)$1	236	11	15	12.0000
UGGG	chr12:9256734-9256952(-)$1	218	95	99	12.0000
UGGG	chr5:134263320-134263583(+)$1	263	21	25	12.0000
UGGG	chr16:28877636-28877877(+)$1	241	116	120	12.0000
UGGG	chr2:21266761-21267027(-)$1	266	44	48	12.0000
UGGG	chr6:170707841-170708091(+)$1	250	29	33	12.0000
uggg	chr22:49971415-49971654(-)$1	239	44	48	12.0000
UGGG	chr2:216270931-216271174(-)$1	243	134	138	12.0000
UGGG	chr17:34171767-34172045(+)$1	278	224	228	12.0000
UGGG	chr19:1415698-1415991(+)$1	293	3	7	12.0000
UGGG	chr19:34885266-34885512(+)$1	246	117	121	12.0000
UGGG	chr4:904895-905168(-)$1	273	68	72	12.0000
UGGG	chr22:50023678-50023899(-)$1	221	13	17	12.0000
uggg	chr20:35486065-35486307(-)$1	242	132	136	12.0000
UGGG	chr9:136131169-136131424(-)$1	255	103	107	12.0000
UGGG	chr7:156931672-156931985(+)$1	313	24	28	12.0000
UGGG	chr16:85647419-85647648(+)$1	229	45	49	12.0000
UGGG	chr19:47729522-47729775(-)$1	253	57	61	12.0000
UGGG	chr1:2125381-2125676(-)$1	295	133	137	12.0000
UGGG	chr22:50037897-50038214(-)$1	317	180	184	12.0000
UGGG	chr7:45928444-45928689(+)$1	245	6	10	12.0000
UGGG	chr13:92000634-92000880(+)$1	246	51	55	12.0000
UGGG	chr5:651666-651922(+)$1	256	53	57	12.0000
UGGG	chr13:114558046-114558283(-)$1	237	49	53	12.0000
UGGG	chr19:1415881-1416133(+)$1	252	6	10	12.0000
UGGG	chr16:89027584-89027914(-)$1	330	23	27	12.0000
UGGG	chr16:85651715-85652066(+)$1	351	74	78	12.0000
UGGG	chr5:79946946-79947192(-)$1	246	14	18	12.0000
UGGG	chrM:1331-1534(+)$1	203	29	33	12.0000
UGGG	chr3:128215230-128215480(+)$1	250	41	45	12.0000
uggg	chr16:88586274-88586562(+)$1	288	5	9	12.0000
UGGG	chr22:20111807-20112056(+)$1	249	14	18	12.0000
UGGG	chr19:1407931-1408193(+)$1	262	51	55	12.0000
UGGG	chr11:65194696-65194924(+)$1	228	17	21	12.0000

#otherMatches

#Struct PSSM
hhhh	chr11:584375-584668(+)$1	293	67	71	12.0000
HHHH	chr17:40351542-40351835(-)$1	293	8	12	12.0000
dddd	chr4:1241205-1241466(-)$1	261	63	67	12.0000
:DDD	chr22:47401881-47402120(+)$1	239	153	157	12.0000
{EEE	chr5:154136582-154136839(+)$1	257	44	48	12.0000
c$$$	chr19:2270119-2270388(+)$1	269	33	37	12.0000
:===	chr3:33481515-33481766(-)$1	251	0	4	12.0000
bb""	chr21:44268273-44268604(-)$1	331	207	211	12.0000
c22g	chr19:14552003-14552274(+)$1	271	126	130	12.0000
3ddd	chr16:88532249-88532497(+)$1	248	93	97	12.0000
bb[a	chr19:2270068-2270303(+)$1	235	20	24	12.0000
{BB{	chr20:62371657-62371968(+)$1	311	82	86	12.0000
JJJJ	chr20:5986967-5987238(+)$1	271	18	22	12.0000
SSGG	chr22:50024047-50024270(-)$1	223	21	25	12.0000
2fff	chr5:139059858-139060154(+)$1	296	165	169	12.0000
MIII	chr17:7154514-7154776(-)$1	262	117	121	12.0000
bb]g	chr15:91445894-91446143(+)$1	249	74	78	12.0000
nnff	chr17:75211498-75211788(+)$1	290	58	62	12.0000
eeee	chr22:23624016-23624273(+)$1	257	7	11	12.0000
FF{B	chr22:50024118-50024353(-)$1	235	104	108	12.0000
b!!g	chr19:4035262-4035559(+)$1	297	31	35	12.0000
:::C	chr13:92000498-92000806(+)$1	308	0	4	12.0000
GG{B	chr20:61568600-61568959(-)$1	359	72	76	12.0000
$ccc	chr22:50039285-50039528(-)$1	243	34	38	12.0000
ooee	chr1:12644358-12644619(-)$1	261	65	69	12.0000
CCC}	chr19:34876796-34877037(+)$1	241	99	103	12.0000
FFFh	chr2:216239985-216240211(-)$1	226	37	41	12.0000
"bbm	chr19:6697304-6697566(-)$1	262	221	225	12.0000
d!!g	chr16:89020544-89020867(-)$1	323	3	7	12.0000
====	chrM:1234-1445(+)$1	211	126	130	12.0000
ccdd	chr4:899122-899376(-)$1	254	1	5	12.0000
ssss	chr20:61568546-61568767(-)$1	221	75	79	12.0000
ffff	chr12:124951158-124951424(-)$1	266	103	107	12.0000
JJJJ	chr19:34882747-34883039(+)$1	292	30	34	12.0000
aeee	chr4:1237230-1237472(-)$1	242	74	78	12.0000
GGGG	chr1:230839955-230840180(-)$1	225	8	12	12.0000
eeee	chr21:44395291-44395544(+)$1	253	95	99	12.0000
hhhh	chr1:1284352-1284629(-)$1	277	31	35	12.0000
Fddd	chr3:20081790-20082102(+)$1	312	51	55	12.0000
eeee	chr9:19380090-19380332(-)$1	242	171	175	12.0000
ff::	chr16:593839-594077(+)$1	238	116	120	12.0000
mmcc	chr8:101321711-101322026(-)$1	315	69	73	12.0000
ffnn	chrM:1341-1544(+)$1	203	19	23	12.0000
bb33	chr19:16187748-16187998(+)$1	250	13	17	12.0000
:ddd	chr16:89980254-89980515(+)$1	261	6	10	12.0000
c[bb	chr6:157733798-157734039(-)$1	241	2	6	12.0000
!ddd	chr1:228675175-228675445(+)$1	270	131	135	12.0000
FFFF	chr1:230841578-230841799(-)$1	221	150	154	12.0000
eee]	chr9:136132897-136133186(-)$1	289	62	66	12.0000
ffff	chr22:50034084-50034320(-)$1	236	11	15	12.0000
cccb	chr12:9256734-9256952(-)$1	218	95	99	12.0000
b[a$	chr5:134263320-134263583(+)$1	263	21	25	12.0000
[ccc	chr16:28877636-28877877(+)$1	241	116	120	12.0000
HHHH	chr2:21266761-21267027(-)$1	266	44	48	12.0000
ddd[	chr6:170707841-170708091(+)$1	250	29	33	12.0000
]fff	chr22:49971415-49971654(-)$1	239	44	48	12.0000
]hhh	chr2:216270931-216271174(-)$1	243	134	138	12.0000
C:::	chr17:34171767-34172045(+)$1	278	224	228	12.0000
FFFF	chr19:1415698-1415991(+)$1	293	3	7	12.0000
ffff	chr19:34885266-34885512(+)$1	246	117	121	12.0000
====	chr4:904895-905168(-)$1	273	68	72	12.0000
Fiii	chr22:50023678-50023899(-)$1	221	13	17	12.0000
JJJJ	chr20:35486065-35486307(-)$1	242	132	136	12.0000
gggg	chr9:136131169-136131424(-)$1	255	103	107	12.0000
HHHH	chr7:156931672-156931985(+)$1	313	24	28	12.0000
EEE=	chr16:85647419-85647648(+)$1	229	45	49	12.0000
HLLL	chr19:47729522-47729775(-)$1	253	57	61	12.0000
gggg	chr1:2125381-2125676(-)$1	295	133	137	12.0000
dddd	chr22:50037897-50038214(-)$1	317	180	184	12.0000
====	chr7:45928444-45928689(+)$1	245	6	10	12.0000
ssss	chr13:92000634-92000880(+)$1	246	51	55	12.0000
cc##	chr5:651666-651922(+)$1	256	53	57	12.0000
ffff	chr13:114558046-114558283(-)$1	237	49	53	12.0000
FFF{	chr19:1415881-1416133(+)$1	252	6	10	12.0000
{CCC	chr16:89027584-89027914(-)$1	330	23	27	12.0000
gggs	chr16:85651715-85652066(+)$1	351	74	78	12.0000
A{FF	chr5:79946946-79947192(-)$1	246	14	18	12.0000
====	chrM:1331-1534(+)$1	203	29	33	12.0000
g[ff	chr3:128215230-128215480(+)$1	250	41	45	12.0000
::::	chr16:88586274-88586562(+)$1	288	5	9	12.0000
c"""	chr22:20111807-20112056(+)$1	249	14	18	12.0000
:eee	chr19:1407931-1408193(+)$1	262	51	55	12.0000
EECC	chr11:65194696-65194924(+)$1	228	17	21	12.0000

#DB
))))	chr11:584375-584668(+)$1	1	67	71	12.0000
((((	chr17:40351542-40351835(-)$1	1	8	12	12.0000
))))	chr4:1241205-1241466(-)$1	1	63	67	12.0000
.)))	chr22:47401881-47402120(+)$1	1	153	157	12.0000
.(((	chr5:154136582-154136839(+)$1	1	44	48	12.0000
(...	chr19:2270119-2270388(+)$1	1	33	37	12.0000
.(((	chr3:33481515-33481766(-)$1	1	0	4	12.0000
((..	chr21:44268273-44268604(-)$1	1	207	211	12.0000
)..)	chr19:14552003-14552274(+)$1	1	126	130	12.0000
.)))	chr16:88532249-88532497(+)$1	1	93	97	12.0000
((.(	chr19:2270068-2270303(+)$1	1	20	24	12.0000
.((.	chr20:62371657-62371968(+)$1	1	82	86	12.0000
((((	chr20:5986967-5987238(+)$1	1	18	22	12.0000
..((	chr22:50024047-50024270(-)$1	1	21	25	12.0000
.)))	chr5:139059858-139060154(+)$1	1	165	169	12.0000
.(((	chr17:7154514-7154776(-)$1	1	117	121	12.0000
)).)	chr15:91445894-91446143(+)$1	1	74	78	12.0000
..))	chr17:75211498-75211788(+)$1	1	58	62	12.0000
((((	chr22:23624016-23624273(+)$1	1	7	11	12.0000
((.(	chr22:50024118-50024353(-)$1	1	104	108	12.0000
(..(	chr19:4035262-4035559(+)$1	1	31	35	12.0000
...(	chr13:92000498-92000806(+)$1	1	0	4	12.0000
((.(	chr20:61568600-61568959(-)$1	1	72	76	12.0000
.(((	chr22:50039285-50039528(-)$1	1	34	38	12.0000
..))	chr1:12644358-12644619(-)$1	1	65	69	12.0000
))).	chr19:34876796-34877037(+)$1	1	99	103	12.0000
((((	chr2:216239985-216240211(-)$1	1	37	41	12.0000
.((.	chr19:6697304-6697566(-)$1	1	221	225	12.0000
(..(	chr16:89020544-89020867(-)$1	1	3	7	12.0000
))))	chrM:1234-1445(+)$1	1	126	130	12.0000
((((	chr4:899122-899376(-)$1	1	1	5	12.0000
....	chr20:61568546-61568767(-)$1	1	75	79	12.0000
((((	chr12:124951158-124951424(-)$1	1	103	107	12.0000
((((	chr19:34882747-34883039(+)$1	1	30	34	12.0000
)(((	chr4:1237230-1237472(-)$1	1	74	78	12.0000
((((	chr1:230839955-230840180(-)$1	1	8	12	12.0000
((((	chr21:44395291-44395544(+)$1	1	95	99	12.0000
((((	chr1:1284352-1284629(-)$1	1	31	35	12.0000
((((	chr3:20081790-20082102(+)$1	1	51	55	12.0000
))))	chr9:19380090-19380332(-)$1	1	171	175	12.0000
))..	chr16:593839-594077(+)$1	1	116	120	12.0000
..))	chr8:101321711-101322026(-)$1	1	69	73	12.0000
((..	chrM:1341-1544(+)$1	1	19	23	12.0000
))..	chr19:16187748-16187998(+)$1	1	13	17	12.0000
.(((	chr16:89980254-89980515(+)$1	1	6	10	12.0000
(.((	chr6:157733798-157734039(-)$1	1	2	6	12.0000
.(((	chr1:228675175-228675445(+)$1	1	131	135	12.0000
))))	chr1:230841578-230841799(-)$1	1	150	154	12.0000
))).	chr9:136132897-136133186(-)$1	1	62	66	12.0000
((((	chr22:50034084-50034320(-)$1	1	11	15	12.0000
))))	chr12:9256734-9256952(-)$1	1	95	99	12.0000
(.(.	chr5:134263320-134263583(+)$1	1	21	25	12.0000
.(((	chr16:28877636-28877877(+)$1	1	116	120	12.0000
((((	chr2:21266761-21267027(-)$1	1	44	48	12.0000
(((.	chr6:170707841-170708091(+)$1	1	29	33	12.0000
.)))	chr22:49971415-49971654(-)$1	1	44	48	12.0000
.)))	chr2:216270931-216271174(-)$1	1	134	138	12.0000
)...	chr17:34171767-34172045(+)$1	1	224	228	12.0000
((((	chr19:1415698-1415991(+)$1	1	3	7	12.0000
))))	chr19:34885266-34885512(+)$1	1	117	121	12.0000
((((	chr4:904895-905168(-)$1	1	68	72	12.0000
((((	chr22:50023678-50023899(-)$1	1	13	17	12.0000
((((	chr20:35486065-35486307(-)$1	1	132	136	12.0000
))))	chr9:136131169-136131424(-)$1	1	103	107	12.0000
((((	chr7:156931672-156931985(+)$1	1	24	28	12.0000
((((	chr16:85647419-85647648(+)$1	1	45	49	12.0000
(...	chr19:47729522-47729775(-)$1	1	57	61	12.0000
))))	chr1:2125381-2125676(-)$1	1	133	137	12.0000
))))	chr22:50037897-50038214(-)$1	1	180	184	12.0000
((((	chr7:45928444-45928689(+)$1	1	6	10	12.0000
....	chr13:92000634-92000880(+)$1	1	51	55	12.0000
((..	chr5:651666-651922(+)$1	1	53	57	12.0000
((((	chr13:114558046-114558283(-)$1	1	49	53	12.0000
(((.	chr19:1415881-1416133(+)$1	1	6	10	12.0000
.(((	chr16:89027584-89027914(-)$1	1	23	27	12.0000
(((.	chr16:85651715-85652066(+)$1	1	74	78	12.0000
(.((	chr5:79946946-79947192(-)$1	1	14	18	12.0000
))))	chrM:1331-1534(+)$1	1	29	33	12.0000
(.((	chr3:128215230-128215480(+)$1	1	41	45	12.0000
....	chr16:88586274-88586562(+)$1	1	5	9	12.0000
(...	chr22:20111807-20112056(+)$1	1	14	18	12.0000
.(((	chr19:1407931-1408193(+)$1	1	51	55	12.0000
((((	chr11:65194696-65194924(+)$1	1	17	21	12.0000

#PSSM
U : 0.89	u : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	

#score	996.0000000000002
#seq	83
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_UTR_m1_run2.nuc.txt

#NT
CGGGUGGGCUGGG	chr17:79866767-79867103(-)$1	336	146	159	19.4347
GGGGUCUGCGGGG	chr9:139250028-139250304(+)$1	276	64	77	18.1304
GGGGAGGGAGGGA	chr16:28835304-28835575(+)$1	271	19	32	22.1521
AGGGAGGGCGGGG	chr5:43121612-43122005(+)$1	393	91	104	23.7826
gggcggggcgggg	chr9:139560091-139560367(+)$1	276	58	71	23.0217
CGGGAGGGCGGGG	chr7:140178737-140179006(-)$1	269	147	160	23.6739
ggggugggggugg	chr16:447636-447891(+)$1	255	16	29	21.1739
GCGGCGGGCGGGG	chr3:45730918-45731230(+)$1	312	100	113	21.8260
GGGGAGGGCCGAG	chr19:1881842-1882094(-)$1	252	151	164	20.0869
gaggagggcaggg	chr6:86352563-86352827(-)$1	264	36	49	20.1956
GGGGAGGGCGGGG	chr14:32546299-32546560(+)$1	261	158	171	27.9130
GGGGAGCGAGGGG	chr1:2122240-2122565(-)$1	325	290	303	21.3913
GGGGAGGGGGUGC	chr17:79878275-79878535(-)$1	260	104	117	18.1304
gagaugggcgggg	chr8:145691407-145691682(+)$1	275	9	22	19.4347
ggggcgcgcgggg	chr4:2935988-2936298(-)$1	310	86	99	21.7173
GGGCAGGGGGUGG	chr11:404655-404968(+)$1	313	110	123	18.9999
GGCGAGGGUGGGG	chr16:85122095-85122448(+)$1	353	165	178	20.8478
GGGGAUGGAUGGG	chr12:132402869-132403140(+)$1	271	107	120	17.9130
GAGGAGGGCUGGG	chr22:40368805-40369145(+)$1	340	174	187	20.4130
GGGGUGGGCGGGA	chr17:76122911-76123205(-)$1	294	97	110	23.4565
GGGCAGGGUGGGG	chr9:139904712-139904986(-)$1	274	113	126	22.3695
GGGGUGGGAGGGU	chr19:14203674-14203962(-)$1	288	96	109	20.8478
GGGCAGGGGGCGG	chr21:46644502-46644765(+)$1	263	92	105	18.7826
AGGGUGGGCGGGA	chr19:19639562-19639826(+)$1	264	72	85	19.3260
GGGGUGGGGGUGG	chr9:140176051-140176352(+)$1	301	119	132	21.1739
ggugggggccggg	chr19:7978250-7978567(+)$1	317	146	159	18.3478
gggaagggcuggg	chr22:50013861-50014173(-)$1	312	95	108	21.0652
ggggcggggcggg	chr5:176738813-176739097(-)$1	284	150	163	20.7391
GGGGUGGGAGGGG	chr17:46131916-46132230(+)$1	314	42	55	24.8695
ggggagggcgggc	chr3:100428675-100428948(+)$1	273	69	82	23.9999
GGGCGGGGCGGGG	chr2:48010954-48011223(+)$1	269	79	92	23.0217
GGGCAGGGUGGGG	chr9:139904818-139905104(-)$1	286	231	244	22.3695
GGGGAGGGCAGGG	chr15:40758374-40758664(+)$1	290	83	96	24.3260
GGGAUGGGCGGGA	chr6:30881965-30882258(+)$1	293	220	233	19.9782
GGGGAgggcccgg	chr3:195635560-195635882(-)$1	322	109	122	20.6304
ggugggggcgggg	chr19:47778061-47778339(+)$1	278	46	59	21.6086
ggggagggggagg	chr11:95522561-95522848(-)$1	287	96	109	21.7173
gcggugggcgggg	chr22:39917006-39917282(+)$1	276	87	100	22.8043
ggggcgggcgggg	chr19:15442537-15442795(-)$1	258	28	41	26.0652
GGGGGGUGGGGGG	chr19:36245871-36246168(+)$1	297	84	97	19.6521
GGGGUGGGUGGGA	chr19:41771027-41771289(+)$1	262	226	239	20.9565
GGGCAGGGAGGGG	chrX:133930784-133931088(-)$1	304	62	75	22.6956
GGGGAGGGAGGAG	chr16:29821985-29822235(+)$1	250	16	29	21.1739
ggguugggcgggG	chr14:23791038-23791279(+)$1	241	85	98	23.3478
GGGGUUGGCCGGG	chr3:33481577-33481852(-)$1	275	24	37	19.3260

#otherMatches

#Struct PSSM
:::::EEEEE{DD	chr3:100428748-100428988(+)$1	240	0	13	21.9347
dddd[hhhhhhhh	chr17:79866767-79867103(-)$1	336	146	159	19.4347
ggggggg[eeeee	chr9:139250028-139250304(+)$1	276	64	77	18.1304
ggggggg[bb[ff	chr16:28835304-28835575(+)$1	271	19	32	22.1521
hhhhhhhbbdddd	chr5:43121612-43122005(+)$1	393	91	104	23.7826
[cccqqqqqqqqc	chr9:139560091-139560367(+)$1	276	58	71	23.0217
bb[ffffffeeee	chr7:140178737-140179006(-)$1	269	147	160	23.6739
qqqqqqqqccc]c	chr16:447636-447891(+)$1	255	16	29	21.1739
[ccc[bb[fffff	chr3:45730918-45731230(+)$1	312	100	113	21.8260
eeeeeeeeee!!d	chr19:1881842-1882094(-)$1	252	151	164	20.0869
KKALLLCCCLLLH	chr6:86352563-86352827(-)$1	264	36	49	20.1956
$$$$$bb[bbqqq	chr14:32546299-32546560(+)$1	261	158	171	27.9130
33ccc]a]bb22g	chr1:2122240-2122565(-)$1	325	290	303	21.3913
::eeeeeeeeeem	chr17:79878275-79878535(-)$1	260	104	117	18.1304
E{BB{GGGGGGGd	chr8:145691407-145691682(+)$1	275	9	22	19.4347
fffff[bb[ffff	chr4:2935988-2936298(-)$1	310	86	99	21.7173
qqqqqffffffGG	chr11:404655-404968(+)$1	313	110	123	18.9999
EEEE}IIIIIIII	chr16:85122095-85122448(+)$1	353	165	178	20.8478
EE:::::ddddee	chr12:132402869-132403140(+)$1	271	107	120	17.9130
GGGGGGG{BB:hh	chr22:40368805-40369145(+)$1	340	174	187	20.4130
hhhhhhh####cc	chr17:76122911-76123205(-)$1	294	97	110	23.4565
EEEE::ggggggg	chr9:139904712-139904986(-)$1	274	113	126	22.3695
hhhhhhhh[bbgg	chr19:14203674-14203962(-)$1	288	96	109	20.8478
gggg:hhhhhhhh	chr21:46644502-46644765(+)$1	263	92	105	18.7826
ODDDD{CCC:iii	chr19:19639562-19639826(+)$1	264	72	85	19.3260
===========!!	chr9:140176051-140176352(+)$1	301	119	132	21.1739
LLLFFFFFFAddd	chr19:7978250-7978567(+)$1	317	146	159	18.3478
d::::AKKCCCHH	chr22:50013861-50014173(-)$1	312	95	108	21.0652
gggggiiiiiiii	chr5:176738813-176739097(-)$1	284	150	163	20.7391
bb[dddd[ggggg	chr17:46131916-46132230(+)$1	314	42	55	24.8695
ii$$$$$bb"""b	chr3:100428675-100428948(+)$1	273	69	82	23.9999
a::GGGGGGGLLL	chr2:48010954-48011223(+)$1	269	79	92	23.0217
fffff"""bbmmm	chr9:139904818-139905104(-)$1	286	231	244	22.3695
mhhhhhhhh:::E	chr15:40758374-40758664(+)$1	290	83	96	24.3260
fffffddddoooo	chr6:30881965-30882258(+)$1	293	220	233	19.9782
[cccmmmmccc]f	chr3:195635560-195635882(-)$1	322	109	122	20.6304
HHHHHH{BBFFFF	chr19:47778061-47778339(+)$1	278	46	59	21.6086
ddd"""a[fffff	chr11:95522561-95522848(-)$1	287	96	109	21.7173
cc22bb]bb333d	chr22:39917006-39917282(+)$1	276	87	100	22.8043
DDDFFFFFF{CCC	chr19:15442537-15442795(-)$1	258	28	41	26.0652
gg:BB{CCC{BBK	chr19:36245871-36246168(+)$1	297	84	97	19.6521
]bb]a:::::FFF	chr19:41771027-41771289(+)$1	262	226	239	20.9565
iiiiiii22dddd	chrX:133930784-133931088(-)$1	304	62	75	22.6956
qqqqqq=======	chr16:29821985-29822235(+)$1	250	16	29	21.1739
5555eeeeeccc[	chr14:23791038-23791279(+)$1	241	85	98	23.3478
G:dddd[ccc[dd	chr3:33481577-33481852(-)$1	275	24	37	19.3260

#DB
.....(((((.((	chr3:100428748-100428988(+)$1	1	0	13	21.9347
((((.((((((((	chr17:79866767-79867103(-)$1	1	146	159	19.4347
(((((((.(((((	chr9:139250028-139250304(+)$1	1	64	77	18.1304
(((((((.((.((	chr16:28835304-28835575(+)$1	1	19	32	22.1521
)))))))))((((	chr5:43121612-43122005(+)$1	1	91	104	23.7826
.(((........)	chr9:139560091-139560367(+)$1	1	58	71	23.0217
((.((((((((((	chr7:140178737-140179006(-)$1	1	147	160	23.6739
........))).)	chr16:447636-447891(+)$1	1	16	29	21.1739
.(((.((.(((((	chr3:45730918-45731230(+)$1	1	100	113	21.8260
)))))(((((..(	chr19:1881842-1882094(-)$1	1	151	164	20.0869
..(...(((...(	chr6:86352563-86352827(-)$1	1	36	49	20.1956
.....((.((...	chr14:32546299-32546560(+)$1	1	158	171	27.9130
..))).).))..)	chr1:2122240-2122565(-)$1	1	290	303	21.3913
..((((((((((.	chr17:79878275-79878535(-)$1	1	104	117	18.1304
(.((.((((((((	chr8:145691407-145691682(+)$1	1	9	22	19.4347
(((((.((.((((	chr4:2935988-2936298(-)$1	1	86	99	21.7173
.....))))))((	chr11:404655-404968(+)$1	1	110	123	18.9999
)))).))))))))	chr16:85122095-85122448(+)$1	1	165	178	20.8478
((.....((((((	chr12:132402869-132403140(+)$1	1	107	120	17.9130
(((((((.((.((	chr22:40368805-40369145(+)$1	1	174	187	20.4130
(((((((....((	chr17:76122911-76123205(-)$1	1	97	110	23.4565
((((..(((((((	chr9:139904712-139904986(-)$1	1	113	126	22.3695
((((((((.((((	chr19:14203674-14203962(-)$1	1	96	109	20.8478
)))).((((((((	chr21:46644502-46644765(+)$1	1	92	105	18.7826
.((((.(((.(((	chr19:19639562-19639826(+)$1	1	72	85	19.3260
(((((((((((..	chr9:140176051-140176352(+)$1	1	119	132	21.1739
...((((((((((	chr19:7978250-7978567(+)$1	1	146	159	18.3478
)....(..(((((	chr22:50013861-50014173(-)$1	1	95	108	21.0652
)))))((((((((	chr5:176738813-176739097(-)$1	1	150	163	20.7391
((.((((.(((((	chr17:46131916-46132230(+)$1	1	42	55	24.8695
((.....((...(	chr3:100428675-100428948(+)$1	1	69	82	23.9999
)..(((((((...	chr2:48010954-48011223(+)$1	1	79	92	23.0217
(((((...((...	chr9:139904818-139905104(-)$1	1	231	244	22.3695
.))))))))...)	chr15:40758374-40758664(+)$1	1	83	96	24.3260
)))))((((....	chr6:30881965-30882258(+)$1	1	220	233	19.9782
.(((....))).)	chr3:195635560-195635882(-)$1	1	109	122	20.6304
((((((.((((((	chr19:47778061-47778339(+)$1	1	46	59	21.6086
(((...(.(((((	chr11:95522561-95522848(-)$1	1	96	109	21.7173
))..)).))...)	chr22:39917006-39917282(+)$1	1	87	100	22.8043
(((((((((.(((	chr19:15442537-15442795(-)$1	1	28	41	26.0652
)).((.(((.((.	chr19:36245871-36246168(+)$1	1	84	97	19.6521
.)).).....)))	chr19:41771027-41771289(+)$1	1	226	239	20.9565
)))))))..))))	chrX:133930784-133931088(-)$1	1	62	75	22.6956
......)))))))	chr16:29821985-29822235(+)$1	1	16	29	21.1739
....)))))(((.	chr14:23791038-23791279(+)$1	1	85	98	23.3478
(.((((.(((.((	chr3:33481577-33481852(-)$1	1	24	37	19.3260

#PSSM
G : 0.58	g : 0.30	C : 0.04	A : 0.04	a : 0.02	
G : 0.63	g : 0.26	a : 0.04	C : 0.02	A : 0.02	c : 0.02	
G : 0.65	g : 0.28	u : 0.04	C : 0.02	
G : 0.52	g : 0.23	C : 0.13	a : 0.04	c : 0.02	A : 0.02	u : 0.02	
A : 0.39	U : 0.21	c : 0.08	u : 0.08	a : 0.08	g : 0.06	G : 0.04	C : 0.02	
G : 0.58	g : 0.34	U : 0.04	C : 0.02	
G : 0.58	g : 0.32	U : 0.04	C : 0.02	c : 0.02	
G : 0.65	g : 0.34	
C : 0.30	c : 0.28	A : 0.15	G : 0.10	U : 0.08	g : 0.06	
G : 0.52	g : 0.23	U : 0.06	c : 0.06	C : 0.04	a : 0.02	u : 0.02	A : 0.02	
G : 0.56	g : 0.28	U : 0.06	u : 0.02	C : 0.02	c : 0.02	a : 0.02	
G : 0.60	g : 0.34	A : 0.04	
G : 0.54	g : 0.28	A : 0.10	C : 0.02	U : 0.02	c : 0.02	

#score	986.8260869565213
#seq	46
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_CDS_m3_run1.nuc.txt

#NT
GAA	chr10:113931845-113932140(-)$1	295	18	21	9.0000
GAA	chr2:11332173-11332420(-)$1	247	18	21	9.0000
GAA	chr13:33692115-33692465(-)$1	350	91	94	9.0000
GAA	chr2:70046311-70046571(+)$1	260	15	18	9.0000
GAA	chr11:118638843-118639130(-)$1	287	14	17	9.0000
GAA	chr2:219093360-219093630(+)$1	270	173	176	9.0000
GAA	chr13:113897310-113897562(+)$1	252	3	6	9.0000
GAA	chr5:60448552-60448831(+)$1	279	5	8	9.0000
GAA	chr16:24802581-24802827(+)$1	246	42	45	9.0000
GAA	chr11:63967392-63967608(+)$1	216	3	6	9.0000
GAA	chr18:46284184-46284515(+)$1	331	192	195	9.0000
GAA	chr21:35147203-35147512(+)$1	309	3	6	9.0000
GAA	chr15:75650946-75651240(-)$1	294	118	121	9.0000
GAA	chr2:230675752-230675980(-)$1	228	11	14	9.0000
GAA	chr10:112328632-112328863(+)$1	231	6	9	9.0000
GAA	chr9:34646584-34646888(+)$1	304	59	62	9.0000
GAA	chr2:128935998-128936244(+)$1	246	58	61	9.0000
GAA	chr15:66793628-66793844(-)$1	216	18	21	9.0000
GAA	chr10:70728712-70728975(+)$1	263	24	27	9.0000
GAA	chr4:1803108-1803321(+)$1	213	22	25	9.0000
GAA	chr16:30972537-30972800(+)$1	263	0	3	9.0000
GAA	chr17:27011627-27011843(+)$1	216	39	42	9.0000
GAA	chr1:154574908-154575157(-)$1	249	172	175	9.0000
GAA	chr20:39728745-39728961(+)$1	216	93	96	9.0000
GAA	chrX:64734688-64734947(-)$1	259	48	51	9.0000
GAA	chr16:88786236-88786464(-)$1	228	108	111	9.0000
GAA	chr9:123307955-123308168(-)$1	213	21	24	9.0000
GAA	chr20:17596491-17596727(-)$1	236	75	78	9.0000
GAA	chr16:30715384-30715658(+)$1	274	206	209	9.0000
GAA	chr7:140396462-140396745(+)$1	283	25	28	9.0000
GAA	chr6:4892172-4892448(+)$1	276	55	58	9.0000
GAA	chr7:26236168-26236378(-)$1	210	29	32	9.0000
GAA	chr21:34123372-34123629(-)$1	257	61	64	9.0000
gaa	chr6:30134853-30135105(+)$1	252	52	55	9.0000
GAA	chr1:10381733-10382008(+)$1	275	50	53	9.0000
GAA	chrX:76888595-76888811(-)$1	216	2	5	9.0000
GAA	chr1:39910272-39910523(+)$1	251	21	24	9.0000
GAA	chr1:10318450-10318697(+)$1	247	30	33	9.0000
GAA	chr15:67835546-67835870(+)$1	324	165	168	9.0000
GAA	chr12:427171-427428(-)$1	257	25	28	9.0000
gaa	chr6:7301691-7301906(-)$1	215	8	11	9.0000
GAA	chr12:114362428-114362654(-)$1	226	115	118	9.0000
GAA	chr2:61647815-61648063(-)$1	248	31	34	9.0000
GAA	chr19:5222033-5222297(-)$1	264	76	79	9.0000
GAA	chr12:63087645-63087878(-)$1	233	11	14	9.0000
GAA	chr19:4430497-4430737(+)$1	240	21	24	9.0000
GAA	chr3:186288604-186288855(+)$1	251	57	60	9.0000
GAA	chr16:27495436-27495713(-)$1	277	41	44	9.0000
GAA	chr14:94545832-94546109(-)$1	277	23	26	9.0000
GAA	chr20:25507039-25507273(-)$1	234	56	59	9.0000
GAA	chr17:36955488-36955769(-)$1	281	163	166	9.0000
GAA	chr8:27364299-27364546(+)$1	247	121	124	9.0000
GAA	chr10:79781863-79782159(-)$1	296	17	20	9.0000
GAA	chr3:122943848-122944259(+)$1	411	47	50	9.0000
GAA	chr1:93302994-93303200(+)$1	206	1	4	9.0000
GAA	chr17:62499583-62499789(-)$1	206	16	19	9.0000
GAA	chr10:6154196-6154444(+)$1	248	3	6	9.0000
GAA	chr14:35873570-35873823(-)$1	253	32	35	9.0000
GAA	chr1:17953725-17954026(+)$1	301	107	110	9.0000
gaa	chr8:141669634-141669862(-)$1	228	14	17	9.0000
GAA	chr16:72130236-72130464(+)$1	228	11	14	9.0000
GAA	chr17:73997860-73998131(+)$1	271	18	21	9.0000
GAA	chr17:48827887-48828114(+)$1	227	8	11	9.0000
GAA	chr22:36906831-36907146(-)$1	315	2	5	9.0000
GAA	chr19:19135974-19136218(-)$1	244	52	55	9.0000
GAA	chr6:7579682-7579918(+)$1	236	10	13	9.0000
GAA	chr6:146243707-146244063(-)$1	356	25	28	9.0000
GAA	chr2:101666766-101667015(-)$1	249	0	3	9.0000
GAA	chr17:73127544-73127850(-)$1	306	292	295	9.0000
GAA	chr11:122930346-122930598(-)$1	252	4	7	9.0000
GAA	chr7:134642896-134643142(+)$1	246	17	20	9.0000
GAA	chr17:8396221-8396441(-)$1	220	113	116	9.0000
GAA	chr17:62499570-62499783(-)$1	213	10	13	9.0000
GAA	chr20:47842866-47843113(+)$1	247	26	29	9.0000
GAA	chr20:34832601-34832979(+)$1	378	19	22	9.0000
GAA	chr7:72924992-72925254(-)$1	262	56	59	9.0000
GAA	chr16:69481927-69482150(+)$1	223	20	23	9.0000
GAA	chr21:47766556-47766793(+)$1	237	189	192	9.0000
GAA	chr2:242648533-242648819(+)$1	286	101	104	9.0000
GAA	chr14:104120951-104121263(+)$1	312	0	3	9.0000
GAA	chr17:75478140-75478413(+)$1	273	167	170	9.0000
GAA	chr6:24784598-24784849(+)$1	251	44	47	9.0000
GAA	chr17:74006467-74006728(-)$1	261	14	17	9.0000
GAA	chr22:22161837-22162135(-)$1	298	42	45	9.0000
GAA	chr2:71626603-71626851(+)$1	248	25	28	9.0000
GAA	chr1:26230130-26230405(-)$1	275	30	33	9.0000
GAA	chr20:25470410-25470626(-)$1	216	5	8	9.0000
GAA	chr3:52561929-52562155(-)$1	226	89	92	9.0000
GAA	chr1:25571524-25571830(-)$1	306	41	44	9.0000
GAA	chr9:35724477-35724746(-)$1	269	42	45	9.0000
GAA	chr10:129906128-129906356(-)$1	228	64	67	9.0000
GAA	chr2:242606027-242606266(+)$1	239	10	13	9.0000
GAA	chr17:26906687-26906957(-)$1	270	107	110	9.0000
GAA	chr16:2810387-2810600(+)$1	213	14	17	9.0000
GAA	chr12:132490607-132490938(+)$1	331	146	149	9.0000
GAA	chr17:45006800-45007042(+)$1	242	10	13	9.0000
gAA	chr3:179481688-179481960(+)$1	272	14	17	9.0000
GAA	chr20:20017871-20018205(-)$1	334	27	30	9.0000
GAA	chr6:158487437-158487709(+)$1	272	9	12	9.0000

#otherMatches

#Struct PSSM
:::	chr12:30881623-30881877(-)$1	254	19	22	9.0000
ppp	chr10:113931845-113932140(-)$1	295	18	21	9.0000
a[e	chr2:11332173-11332420(-)$1	247	18	21	9.0000
EEE	chr13:33692115-33692465(-)$1	350	91	94	9.0000
ddd	chr2:70046311-70046571(+)$1	260	15	18	9.0000
EEE	chr11:118638843-118639130(-)$1	287	14	17	9.0000
fff	chr2:219093360-219093630(+)$1	270	173	176	9.0000
EEM	chr13:113897310-113897562(+)$1	252	3	6	9.0000
GGG	chr5:60448552-60448831(+)$1	279	5	8	9.0000
ddd	chr16:24802581-24802827(+)$1	246	42	45	9.0000
eeo	chr11:63967392-63967608(+)$1	216	3	6	9.0000
sss	chr18:46284184-46284515(+)$1	331	192	195	9.0000
:::	chr21:35147203-35147512(+)$1	309	3	6	9.0000
:::	chr15:75650946-75651240(-)$1	294	118	121	9.0000
JJJ	chr2:230675752-230675980(-)$1	228	11	14	9.0000
===	chr10:112328632-112328863(+)$1	231	6	9	9.0000
AMM	chr9:34646584-34646888(+)$1	304	59	62	9.0000
###	chr2:128935998-128936244(+)$1	246	58	61	9.0000
nnn	chr15:66793628-66793844(-)$1	216	18	21	9.0000
DDF	chr10:70728712-70728975(+)$1	263	24	27	9.0000
&&&	chr4:1803108-1803321(+)$1	213	22	25	9.0000
fff	chr16:30972537-30972800(+)$1	263	0	3	9.0000
DDD	chr17:27011627-27011843(+)$1	216	39	42	9.0000
:::	chr1:154574908-154575157(-)$1	249	172	175	9.0000
boo	chr20:39728745-39728961(+)$1	216	93	96	9.0000
mmm	chrX:64734688-64734947(-)$1	259	48	51	9.0000
a!!	chr16:88786236-88786464(-)$1	228	108	111	9.0000
!!f	chr9:123307955-123308168(-)$1	213	21	24	9.0000
foo	chr20:17596491-17596727(-)$1	236	75	78	9.0000
a::	chr16:30715384-30715658(+)$1	274	206	209	9.0000
:::	chr7:140396462-140396745(+)$1	283	25	28	9.0000
e""	chr6:4892172-4892448(+)$1	276	55	58	9.0000
ggg	chr7:26236168-26236378(-)$1	210	29	32	9.0000
hhh	chr21:34123372-34123629(-)$1	257	61	64	9.0000
q==	chr6:30134853-30135105(+)$1	252	52	55	9.0000
:::	chr1:10381733-10382008(+)$1	275	50	53	9.0000
::b	chrX:76888595-76888811(-)$1	216	2	5	9.0000
dd!	chr1:39910272-39910523(+)$1	251	21	24	9.0000
:::	chr1:10318450-10318697(+)$1	247	30	33	9.0000
mmm	chr15:67835546-67835870(+)$1	324	165	168	9.0000
::c	chr12:427171-427428(-)$1	257	25	28	9.0000
===	chr6:7301691-7301906(-)$1	215	8	11	9.0000
nnn	chr12:114362428-114362654(-)$1	226	115	118	9.0000
ddd	chr2:61647815-61648063(-)$1	248	31	34	9.0000
ggg	chr19:5222033-5222297(-)$1	264	76	79	9.0000
eeq	chr12:63087645-63087878(-)$1	233	11	14	9.0000
bb:	chr19:4430497-4430737(+)$1	240	21	24	9.0000
ff[	chr3:186288604-186288855(+)$1	251	57	60	9.0000
hh[	chr16:27495436-27495713(-)$1	277	41	44	9.0000
ooo	chr14:94545832-94546109(-)$1	277	23	26	9.0000
===	chr20:25507039-25507273(-)$1	234	56	59	9.0000
:::	chr17:36955488-36955769(-)$1	281	163	166	9.0000
:::	chr8:27364299-27364546(+)$1	247	121	124	9.0000
eee	chr10:79781863-79782159(-)$1	296	17	20	9.0000
qqq	chr3:122943848-122944259(+)$1	411	47	50	9.0000
:::	chr1:93302994-93303200(+)$1	206	1	4	9.0000
A{C	chr17:62499583-62499789(-)$1	206	16	19	9.0000
:::	chr10:6154196-6154444(+)$1	248	3	6	9.0000
:::	chr14:35873570-35873823(-)$1	253	32	35	9.0000
c00	chr1:17953725-17954026(+)$1	301	107	110	9.0000
B::	chr8:141669634-141669862(-)$1	228	14	17	9.0000
GGG	chr16:72130236-72130464(+)$1	228	11	14	9.0000
J:e	chr17:73997860-73998131(+)$1	271	18	21	9.0000
{CC	chr17:48827887-48828114(+)$1	227	8	11	9.0000
:::	chr22:36906831-36907146(-)$1	315	2	5	9.0000
##d	chr19:19135974-19136218(-)$1	244	52	55	9.0000
MMM	chr6:7579682-7579918(+)$1	236	10	13	9.0000
ppp	chr6:146243707-146244063(-)$1	356	25	28	9.0000
:::	chr2:101666766-101667015(-)$1	249	0	3	9.0000
gnn	chr17:73127544-73127850(-)$1	306	292	295	9.0000
fff	chr11:122930346-122930598(-)$1	252	4	7	9.0000
hhq	chr7:134642896-134643142(+)$1	246	17	20	9.0000
eee	chr17:8396221-8396441(-)$1	220	113	116	9.0000
:::	chr17:62499570-62499783(-)$1	213	10	13	9.0000
MMM	chr20:47842866-47843113(+)$1	247	26	29	9.0000
e::	chr20:34832601-34832979(+)$1	378	19	22	9.0000
ddd	chr7:72924992-72925254(-)$1	262	56	59	9.0000
fff	chr16:69481927-69482150(+)$1	223	20	23	9.0000
mmm	chr21:47766556-47766793(+)$1	237	189	192	9.0000
bb2	chr2:242648533-242648819(+)$1	286	101	104	9.0000
ggg	chr14:104120951-104121263(+)$1	312	0	3	9.0000
ddd	chr17:75478140-75478413(+)$1	273	167	170	9.0000
NNN	chr6:24784598-24784849(+)$1	251	44	47	9.0000
(((	chr17:74006467-74006728(-)$1	261	14	17	9.0000
uuu	chr22:22161837-22162135(-)$1	298	42	45	9.0000
fll	chr2:71626603-71626851(+)$1	248	25	28	9.0000
WWW	chr1:26230130-26230405(-)$1	275	30	33	9.0000
$$$	chr20:25470410-25470626(-)$1	216	5	8	9.0000
aoo	chr3:52561929-52562155(-)$1	226	89	92	9.0000
:::	chr1:25571524-25571830(-)$1	306	41	44	9.0000
ppp	chr9:35724477-35724746(-)$1	269	42	45	9.0000
C}C	chr10:129906128-129906356(-)$1	228	64	67	9.0000
bbr	chr2:242606027-242606266(+)$1	239	10	13	9.0000
g::	chr17:26906687-26906957(-)$1	270	107	110	9.0000
DD{	chr16:2810387-2810600(+)$1	213	14	17	9.0000
fff	chr12:132490607-132490938(+)$1	331	146	149	9.0000
D::	chr17:45006800-45007042(+)$1	242	10	13	9.0000
G::	chr3:179481688-179481960(+)$1	272	14	17	9.0000
:::	chr20:20017871-20018205(-)$1	334	27	30	9.0000
BBK	chr6:158487437-158487709(+)$1	272	9	12	9.0000

#DB
...	chr12:30881623-30881877(-)$1	1	19	22	9.0000
...	chr10:113931845-113932140(-)$1	1	18	21	9.0000
(.(	chr2:11332173-11332420(-)$1	1	18	21	9.0000
)))	chr13:33692115-33692465(-)$1	1	91	94	9.0000
(((	chr2:70046311-70046571(+)$1	1	15	18	9.0000
(((	chr11:118638843-118639130(-)$1	1	14	17	9.0000
)))	chr2:219093360-219093630(+)$1	1	173	176	9.0000
((.	chr13:113897310-113897562(+)$1	1	3	6	9.0000
(((	chr5:60448552-60448831(+)$1	1	5	8	9.0000
(((	chr16:24802581-24802827(+)$1	1	42	45	9.0000
((.	chr11:63967392-63967608(+)$1	1	3	6	9.0000
...	chr18:46284184-46284515(+)$1	1	192	195	9.0000
...	chr21:35147203-35147512(+)$1	1	3	6	9.0000
...	chr15:75650946-75651240(-)$1	1	118	121	9.0000
(((	chr2:230675752-230675980(-)$1	1	11	14	9.0000
(((	chr10:112328632-112328863(+)$1	1	6	9	9.0000
(..	chr9:34646584-34646888(+)$1	1	59	62	9.0000
...	chr2:128935998-128936244(+)$1	1	58	61	9.0000
...	chr15:66793628-66793844(-)$1	1	18	21	9.0000
(((	chr10:70728712-70728975(+)$1	1	24	27	9.0000
...	chr4:1803108-1803321(+)$1	1	22	25	9.0000
(((	chr16:30972537-30972800(+)$1	1	0	3	9.0000
(((	chr17:27011627-27011843(+)$1	1	39	42	9.0000
...	chr1:154574908-154575157(-)$1	1	172	175	9.0000
(..	chr20:39728745-39728961(+)$1	1	93	96	9.0000
...	chrX:64734688-64734947(-)$1	1	48	51	9.0000
(..	chr16:88786236-88786464(-)$1	1	108	111	9.0000
..(	chr9:123307955-123308168(-)$1	1	21	24	9.0000
(..	chr20:17596491-17596727(-)$1	1	75	78	9.0000
)..	chr16:30715384-30715658(+)$1	1	206	209	9.0000
...	chr7:140396462-140396745(+)$1	1	25	28	9.0000
(..	chr6:4892172-4892448(+)$1	1	55	58	9.0000
(((	chr7:26236168-26236378(-)$1	1	29	32	9.0000
(((	chr21:34123372-34123629(-)$1	1	61	64	9.0000
.))	chr6:30134853-30135105(+)$1	1	52	55	9.0000
...	chr1:10381733-10382008(+)$1	1	50	53	9.0000
..(	chrX:76888595-76888811(-)$1	1	2	5	9.0000
((.	chr1:39910272-39910523(+)$1	1	21	24	9.0000
...	chr1:10318450-10318697(+)$1	1	30	33	9.0000
...	chr15:67835546-67835870(+)$1	1	165	168	9.0000
..(	chr12:427171-427428(-)$1	1	25	28	9.0000
(((	chr6:7301691-7301906(-)$1	1	8	11	9.0000
...	chr12:114362428-114362654(-)$1	1	115	118	9.0000
(((	chr2:61647815-61648063(-)$1	1	31	34	9.0000
(((	chr19:5222033-5222297(-)$1	1	76	79	9.0000
((.	chr12:63087645-63087878(-)$1	1	11	14	9.0000
)).	chr19:4430497-4430737(+)$1	1	21	24	9.0000
((.	chr3:186288604-186288855(+)$1	1	57	60	9.0000
((.	chr16:27495436-27495713(-)$1	1	41	44	9.0000
...	chr14:94545832-94546109(-)$1	1	23	26	9.0000
)))	chr20:25507039-25507273(-)$1	1	56	59	9.0000
...	chr17:36955488-36955769(-)$1	1	163	166	9.0000
...	chr8:27364299-27364546(+)$1	1	121	124	9.0000
)))	chr10:79781863-79782159(-)$1	1	17	20	9.0000
...	chr3:122943848-122944259(+)$1	1	47	50	9.0000
...	chr1:93302994-93303200(+)$1	1	1	4	9.0000
(.(	chr17:62499583-62499789(-)$1	1	16	19	9.0000
...	chr10:6154196-6154444(+)$1	1	3	6	9.0000
...	chr14:35873570-35873823(-)$1	1	32	35	9.0000
)..	chr1:17953725-17954026(+)$1	1	107	110	9.0000
(..	chr8:141669634-141669862(-)$1	1	14	17	9.0000
(((	chr16:72130236-72130464(+)$1	1	11	14	9.0000
(.(	chr17:73997860-73998131(+)$1	1	18	21	9.0000
.((	chr17:48827887-48828114(+)$1	1	8	11	9.0000
...	chr22:36906831-36907146(-)$1	1	2	5	9.0000
..(	chr19:19135974-19136218(-)$1	1	52	55	9.0000
...	chr6:7579682-7579918(+)$1	1	10	13	9.0000
...	chr6:146243707-146244063(-)$1	1	25	28	9.0000
...	chr2:101666766-101667015(-)$1	1	0	3	9.0000
(..	chr17:73127544-73127850(-)$1	1	292	295	9.0000
(((	chr11:122930346-122930598(-)$1	1	4	7	9.0000
((.	chr7:134642896-134643142(+)$1	1	17	20	9.0000
)))	chr17:8396221-8396441(-)$1	1	113	116	9.0000
...	chr17:62499570-62499783(-)$1	1	10	13	9.0000
...	chr20:47842866-47843113(+)$1	1	26	29	9.0000
)..	chr20:34832601-34832979(+)$1	1	19	22	9.0000
)))	chr7:72924992-72925254(-)$1	1	56	59	9.0000
(((	chr16:69481927-69482150(+)$1	1	20	23	9.0000
...	chr21:47766556-47766793(+)$1	1	189	192	9.0000
)).	chr2:242648533-242648819(+)$1	1	101	104	9.0000
(((	chr14:104120951-104121263(+)$1	1	0	3	9.0000
(((	chr17:75478140-75478413(+)$1	1	167	170	9.0000
...	chr6:24784598-24784849(+)$1	1	44	47	9.0000
...	chr17:74006467-74006728(-)$1	1	14	17	9.0000
...	chr22:22161837-22162135(-)$1	1	42	45	9.0000
(..	chr2:71626603-71626851(+)$1	1	25	28	9.0000
...	chr1:26230130-26230405(-)$1	1	30	33	9.0000
...	chr20:25470410-25470626(-)$1	1	5	8	9.0000
(..	chr3:52561929-52562155(-)$1	1	89	92	9.0000
...	chr1:25571524-25571830(-)$1	1	41	44	9.0000
...	chr9:35724477-35724746(-)$1	1	42	45	9.0000
).)	chr10:129906128-129906356(-)$1	1	64	67	9.0000
((.	chr2:242606027-242606266(+)$1	1	10	13	9.0000
)..	chr17:26906687-26906957(-)$1	1	107	110	9.0000
((.	chr16:2810387-2810600(+)$1	1	14	17	9.0000
)))	chr12:132490607-132490938(+)$1	1	146	149	9.0000
(..	chr17:45006800-45007042(+)$1	1	10	13	9.0000
(..	chr3:179481688-179481960(+)$1	1	14	17	9.0000
...	chr20:20017871-20018205(-)$1	1	27	30	9.0000
((.	chr6:158487437-158487709(+)$1	1	9	12	9.0000

#PSSM
G : 0.96	g : 0.04	
A : 0.97	a : 0.03	
A : 0.97	a : 0.03	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_UTR_m1_run1.nuc.txt

#NT
UCCU	chr16:67180997-67181334(+)$1	337	84	88	11.9999
UCCU	chrX:47088158-47088426(+)$1	268	225	229	11.9999
UCCU	chr12:56669690-56669938(-)$1	248	223	227	11.9999
UCCU	chr15:74005491-74005813(+)$1	322	57	61	11.9999
UCCU	chr20:3629291-3629585(+)$1	294	110	114	11.9999
UCCU	chr20:48698421-48698686(-)$1	265	93	97	11.9999
UCCU	chr1:150938434-150938692(-)$1	258	37	41	11.9999
UCCU	chr5:179157454-179157712(+)$1	258	23	27	11.9999
UCCU	chr1:55316615-55316850(-)$1	235	53	57	11.9999
UCCU	chr20:43059662-43059920(+)$1	258	17	21	11.9999
UCCU	chr19:49468586-49468825(+)$1	239	76	80	11.9999
UCCU	chr10:28897033-28897375(+)$1	342	14	18	11.9999
UCCU	chr11:130013605-130013854(+)$1	249	158	162	11.9999
UCCU	chr11:61734727-61734950(-)$1	223	38	42	11.9999
UCCU	chr1:153963138-153963379(+)$1	241	41	45	11.9999
UCCU	chr6:43752283-43752543(+)$1	260	144	148	11.9999
UCCU	chr12:66218289-66218567(+)$1	278	107	111	11.9999
UCCU	chr11:10818659-10818949(-)$1	290	104	108	11.9999
UCCU	chr2:216225980-216226184(-)$1	204	83	87	11.9999
UCCU	chr22:29190588-29190839(-)$1	251	58	62	11.9999
UCCU	chr15:44672912-44673261(+)$1	349	137	141	11.9999
UCCU	chr16:57287119-57287379(+)$1	260	59	63	11.9999
UCCU	chr2:54895669-54895889(+)$1	220	39	43	11.9999
UCCU	chr8:38961024-38961253(+)$1	229	146	150	11.9999
UCCU	chr16:87865535-87865776(-)$1	241	13	17	11.9999
UCCU	chr1:183112962-183113241(+)$1	279	103	107	11.9999
UCCU	chr10:101911609-101911893(-)$1	284	122	126	11.9999
UCCU	chr7:92235033-92235297(-)$1	264	176	180	11.9999
UCCU	chr20:48744411-48744652(-)$1	241	51	55	11.9999
UCCU	chr12:50156818-50157086(+)$1	268	57	61	11.9999
UCCU	chr20:463451-463711(-)$1	260	105	109	11.9999
uccu	chr4:155506354-155506658(-)$1	304	59	63	11.9999
UCCU	chr5:179157698-179157933(+)$1	235	3	7	11.9999
UCCU	chr20:33128495-33128770(+)$1	275	138	142	11.9999
UCCU	chrX:20173243-20173504(-)$1	261	117	121	11.9999
UCCU	chr16:28846400-28846607(+)$1	207	53	57	11.9999
UCCU	chr3:186793735-186794027(+)$1	292	65	69	11.9999
UCCU	chr2:30863809-30864072(+)$1	263	140	144	11.9999
UCCU	chr3:186796083-186796330(+)$1	247	124	128	11.9999
UCCU	chr15:72491291-72491559(-)$1	268	77	81	11.9999
UCCU	chr3:9517337-9517681(+)$1	344	0	4	11.9999
UCCU	chr1:202910366-202910589(-)$1	223	72	76	11.9999
UCCU	chr10:102123553-102123787(+)$1	234	33	37	11.9999
UCCU	chr12:53873093-53873324(+)$1	231	100	104	11.9999
UCCU	chr16:69731523-69731770(+)$1	247	162	166	11.9999
UCCU	chr10:82278768-82279030(+)$1	262	27	31	11.9999
UCCU	chr12:50157770-50157993(+)$1	223	182	186	11.9999
UCCU	chr6:32136299-32136558(-)$1	259	21	25	11.9999
UCCU	chr3:186793596-186793855(+)$1	259	3	7	11.9999
UCCU	chr3:186795620-186795876(+)$1	256	20	24	11.9999
UCCU	chr2:153505378-153505649(+)$1	271	119	123	11.9999
UCCU	chr19:50001075-50001281(+)$1	206	92	96	11.9999
UCCU	chr17:7481877-7482121(+)$1	244	204	208	11.9999
UCCU	chr10:81073494-81073754(+)$1	260	29	33	11.9999
UCCU	chr17:6588263-6588498(-)$1	235	0	4	11.9999
uccu	chr11:6634903-6635159(-)$1	256	225	229	11.9999
UCCU	chr2:102794388-102794687(+)$1	299	60	64	11.9999
UCCU	chr20:43058460-43058737(+)$1	277	221	225	11.9999
UCCU	chr3:30733583-30733819(+)$1	236	175	179	11.9999
UCCU	chr15:99502145-99502376(+)$1	231	82	86	11.9999
UCCU	chr4:187510036-187510315(-)$1	279	107	111	11.9999
UCCU	chr12:124081640-124081869(+)$1	229	21	25	11.9999
UCCU	chr3:49571682-49571934(+)$1	252	39	43	11.9999
UCCU	chr6:30711577-30711835(-)$1	258	34	38	11.9999
UCCU	chr14:89626927-89627182(-)$1	255	153	157	11.9999
UCCU	chrX:118920374-118920655(-)$1	281	116	120	11.9999
UCCU	chr19:36640645-36640958(+)$1	313	41	45	11.9999
UCCU	chr16:4012796-4013093(-)$1	297	179	183	11.9999
UCCU	chr22:43015345-43015620(-)$1	275	53	57	11.9999
UCCU	chr1:36806601-36806888(-)$1	287	201	205	11.9999
UCCU	chr2:242168855-242169104(-)$1	249	4	8	11.9999
UCCU	chr17:80036167-80036405(-)$1	238	198	202	11.9999
UCCU	chr17:42397089-42397367(-)$1	278	75	79	11.9999
UCCU	chr18:47017834-47018056(-)$1	222	94	98	11.9999
UCCU	chr20:30754080-30754314(+)$1	234	51	55	11.9999
UCCU	chr8:11701918-11702182(-)$1	264	172	176	11.9999
UCCU	chr20:2126734-2126986(+)$1	252	244	248	11.9999
UCCU	chr1:167759281-167759569(+)$1	288	22	26	11.9999
UCCU	chr17:8378621-8378905(-)$1	284	211	215	11.9999
UCCU	chr17:40277348-40277655(-)$1	307	109	113	11.9999
UCCU	chr14:69341412-69341674(-)$1	262	60	64	11.9999
UCCU	chr19:57323806-57324084(-)$1	278	92	96	11.9999
UCCU	chrX:131508152-131508452(-)$1	300	164	168	11.9999
UCCU	chr3:38022558-38022857(+)$1	299	98	102	11.9999
UCCU	chr22:21141324-21141572(+)$1	248	24	28	11.9999
UCCU	chr19:10427383-10427680(-)$1	297	28	32	11.9999
UCCU	chr2:46611767-46612059(+)$1	292	3	7	11.9999
UCCU	chr12:113826918-113827271(+)$1	353	48	52	11.9999
UCCU	chr7:94295507-94295790(+)$1	283	38	42	11.9999

#otherMatches

#Struct PSSM
D}EE	chr17:53401402-53401661(+)$1	259	225	229	11.9999
ccc]	chr16:67180997-67181334(+)$1	337	84	88	11.9999
::::	chrX:47088158-47088426(+)$1	268	225	229	11.9999
CEEE	chr12:56669690-56669938(-)$1	248	223	227	11.9999
::::	chr15:74005491-74005813(+)$1	322	57	61	11.9999
b22c	chr20:3629291-3629585(+)$1	294	110	114	11.9999
^^^^	chr20:48698421-48698686(-)$1	265	93	97	11.9999
d:::	chr1:150938434-150938692(-)$1	258	37	41	11.9999
=###	chr5:179157454-179157712(+)$1	258	23	27	11.9999
DDDD	chr1:55316615-55316850(-)$1	235	53	57	11.9999
eeee	chr20:43059662-43059920(+)$1	258	17	21	11.9999
::::	chr19:49468586-49468825(+)$1	239	76	80	11.9999
NNNN	chr10:28897033-28897375(+)$1	342	14	18	11.9999
####	chr11:130013605-130013854(+)$1	249	158	162	11.9999
::::	chr11:61734727-61734950(-)$1	223	38	42	11.9999
lldd	chr1:153963138-153963379(+)$1	241	41	45	11.9999
eeee	chr6:43752283-43752543(+)$1	260	144	148	11.9999
vvvv	chr12:66218289-66218567(+)$1	278	107	111	11.9999
:bbq	chr11:10818659-10818949(-)$1	290	104	108	11.9999
dddd	chr2:216225980-216226184(-)$1	204	83	87	11.9999
qqqq	chr22:29190588-29190839(-)$1	251	58	62	11.9999
]bbe	chr15:44672912-44673261(+)$1	349	137	141	11.9999
ppcc	chr16:57287119-57287379(+)$1	260	59	63	11.9999
f]bb	chr2:54895669-54895889(+)$1	220	39	43	11.9999
++++	chr8:38961024-38961253(+)$1	229	146	150	11.9999
ee[c	chr16:87865535-87865776(-)$1	241	13	17	11.9999
qqqq	chr1:183112962-183113241(+)$1	279	103	107	11.9999
IYYC	chr10:101911609-101911893(-)$1	284	122	126	11.9999
///E	chr7:92235033-92235297(-)$1	264	176	180	11.9999
HHHH	chr20:48744411-48744652(-)$1	241	51	55	11.9999
%%%g	chr12:50156818-50157086(+)$1	268	57	61	11.9999
::::	chr20:463451-463711(-)$1	260	105	109	11.9999
8888	chr4:155506354-155506658(-)$1	304	59	63	11.9999
ee[d	chr5:179157698-179157933(+)$1	235	3	7	11.9999
9999	chr20:33128495-33128770(+)$1	275	138	142	11.9999
444b	chrX:20173243-20173504(-)$1	261	117	121	11.9999
&&&&	chr16:28846400-28846607(+)$1	207	53	57	11.9999
eeee	chr3:186793735-186794027(+)$1	292	65	69	11.9999
gsss	chr2:30863809-30864072(+)$1	263	140	144	11.9999
ccc#	chr3:186796083-186796330(+)$1	247	124	128	11.9999
elll	chr15:72491291-72491559(-)$1	268	77	81	11.9999
::::	chr3:9517337-9517681(+)$1	344	0	4	11.9999
::::	chr1:202910366-202910589(-)$1	223	72	76	11.9999
EELL	chr10:102123553-102123787(+)$1	234	33	37	11.9999
5ddd	chr12:53873093-53873324(+)$1	231	100	104	11.9999
))))	chr16:69731523-69731770(+)$1	247	162	166	11.9999
DDDD	chr10:82278768-82279030(+)$1	262	27	31	11.9999
fff#	chr12:50157770-50157993(+)$1	223	182	186	11.9999
^^^^	chr6:32136299-32136558(-)$1	259	21	25	11.9999
EEDD	chr3:186793596-186793855(+)$1	259	3	7	11.9999
ddcc	chr3:186795620-186795876(+)$1	256	20	24	11.9999
dddd	chr2:153505378-153505649(+)$1	271	119	123	11.9999
bb]d	chr19:50001075-50001281(+)$1	206	92	96	11.9999
}CCC	chr17:7481877-7482121(+)$1	244	204	208	11.9999
EMMM	chr10:81073494-81073754(+)$1	260	29	33	11.9999
::DD	chr17:6588263-6588498(-)$1	235	0	4	11.9999
::::	chr11:6634903-6635159(-)$1	256	225	229	11.9999
::::	chr2:102794388-102794687(+)$1	299	60	64	11.9999
bb]e	chr20:43058460-43058737(+)$1	277	221	225	11.9999
EEEE	chr3:30733583-30733819(+)$1	236	175	179	11.9999
))))	chr15:99502145-99502376(+)$1	231	82	86	11.9999
bfff	chr4:187510036-187510315(-)$1	279	107	111	11.9999
fnnn	chr12:124081640-124081869(+)$1	229	21	25	11.9999
oa]d	chr3:49571682-49571934(+)$1	252	39	43	11.9999
BKKB	chr6:30711577-30711835(-)$1	258	34	38	11.9999
GGGG	chr14:89626927-89627182(-)$1	255	153	157	11.9999
####	chrX:118920374-118920655(-)$1	281	116	120	11.9999
qeee	chr19:36640645-36640958(+)$1	313	41	45	11.9999
444c	chr16:4012796-4013093(-)$1	297	179	183	11.9999
ddd3	chr22:43015345-43015620(-)$1	275	53	57	11.9999
ppee	chr1:36806601-36806888(-)$1	287	201	205	11.9999
HHHH	chr2:242168855-242169104(-)$1	249	4	8	11.9999
::::	chr17:80036167-80036405(-)$1	238	198	202	11.9999
====	chr17:42397089-42397367(-)$1	278	75	79	11.9999
eee!	chr18:47017834-47018056(-)$1	222	94	98	11.9999
dddd	chr20:30754080-30754314(+)$1	234	51	55	11.9999
eeee	chr8:11701918-11702182(-)$1	264	172	176	11.9999
/GGG	chr20:2126734-2126986(+)$1	252	244	248	11.9999
tttt	chr1:167759281-167759569(+)$1	288	22	26	11.9999
::::	chr17:8378621-8378905(-)$1	284	211	215	11.9999
{CCC	chr17:40277348-40277655(-)$1	307	109	113	11.9999
ddd:	chr14:69341412-69341674(-)$1	262	60	64	11.9999
:::e	chr19:57323806-57324084(-)$1	278	92	96	11.9999
CCCC	chrX:131508152-131508452(-)$1	300	164	168	11.9999
c:::	chr3:38022558-38022857(+)$1	299	98	102	11.9999
JJBB	chr22:21141324-21141572(+)$1	248	24	28	11.9999
nnnn	chr19:10427383-10427680(-)$1	297	28	32	11.9999
:::G	chr2:46611767-46612059(+)$1	292	3	7	11.9999
fff]	chr12:113826918-113827271(+)$1	353	48	52	11.9999
DDDD	chr7:94295507-94295790(+)$1	283	38	42	11.9999

#DB
).))	chr17:53401402-53401661(+)$1	1	225	229	11.9999
))).	chr16:67180997-67181334(+)$1	1	84	88	11.9999
....	chrX:47088158-47088426(+)$1	1	225	229	11.9999
))))	chr12:56669690-56669938(-)$1	1	223	227	11.9999
....	chr15:74005491-74005813(+)$1	1	57	61	11.9999
)..)	chr20:3629291-3629585(+)$1	1	110	114	11.9999
....	chr20:48698421-48698686(-)$1	1	93	97	11.9999
)...	chr1:150938434-150938692(-)$1	1	37	41	11.9999
(...	chr5:179157454-179157712(+)$1	1	23	27	11.9999
((((	chr1:55316615-55316850(-)$1	1	53	57	11.9999
((((	chr20:43059662-43059920(+)$1	1	17	21	11.9999
....	chr19:49468586-49468825(+)$1	1	76	80	11.9999
....	chr10:28897033-28897375(+)$1	1	14	18	11.9999
....	chr11:130013605-130013854(+)$1	1	158	162	11.9999
....	chr11:61734727-61734950(-)$1	1	38	42	11.9999
..))	chr1:153963138-153963379(+)$1	1	41	45	11.9999
((((	chr6:43752283-43752543(+)$1	1	144	148	11.9999
....	chr12:66218289-66218567(+)$1	1	107	111	11.9999
.((.	chr11:10818659-10818949(-)$1	1	104	108	11.9999
))))	chr2:216225980-216226184(-)$1	1	83	87	11.9999
....	chr22:29190588-29190839(-)$1	1	58	62	11.9999
.)))	chr15:44672912-44673261(+)$1	1	137	141	11.9999
..))	chr16:57287119-57287379(+)$1	1	59	63	11.9999
).))	chr2:54895669-54895889(+)$1	1	39	43	11.9999
....	chr8:38961024-38961253(+)$1	1	146	150	11.9999
((.(	chr16:87865535-87865776(-)$1	1	13	17	11.9999
....	chr1:183112962-183113241(+)$1	1	103	107	11.9999
)..)	chr10:101911609-101911893(-)$1	1	122	126	11.9999
...)	chr7:92235033-92235297(-)$1	1	176	180	11.9999
((((	chr20:48744411-48744652(-)$1	1	51	55	11.9999
...(	chr12:50156818-50157086(+)$1	1	57	61	11.9999
....	chr20:463451-463711(-)$1	1	105	109	11.9999
....	chr4:155506354-155506658(-)$1	1	59	63	11.9999
((.(	chr5:179157698-179157933(+)$1	1	3	7	11.9999
....	chr20:33128495-33128770(+)$1	1	138	142	11.9999
...)	chrX:20173243-20173504(-)$1	1	117	121	11.9999
....	chr16:28846400-28846607(+)$1	1	53	57	11.9999
))))	chr3:186793735-186794027(+)$1	1	65	69	11.9999
(...	chr2:30863809-30864072(+)$1	1	140	144	11.9999
(((.	chr3:186796083-186796330(+)$1	1	124	128	11.9999
(...	chr15:72491291-72491559(-)$1	1	77	81	11.9999
....	chr3:9517337-9517681(+)$1	1	0	4	11.9999
....	chr1:202910366-202910589(-)$1	1	72	76	11.9999
((..	chr10:102123553-102123787(+)$1	1	33	37	11.9999
.)))	chr12:53873093-53873324(+)$1	1	100	104	11.9999
....	chr16:69731523-69731770(+)$1	1	162	166	11.9999
((((	chr10:82278768-82279030(+)$1	1	27	31	11.9999
(((.	chr12:50157770-50157993(+)$1	1	182	186	11.9999
....	chr6:32136299-32136558(-)$1	1	21	25	11.9999
((((	chr3:186793596-186793855(+)$1	1	3	7	11.9999
))))	chr3:186795620-186795876(+)$1	1	20	24	11.9999
((((	chr2:153505378-153505649(+)$1	1	119	123	11.9999
)).)	chr19:50001075-50001281(+)$1	1	92	96	11.9999
.)))	chr17:7481877-7482121(+)$1	1	204	208	11.9999
(...	chr10:81073494-81073754(+)$1	1	29	33	11.9999
..((	chr17:6588263-6588498(-)$1	1	0	4	11.9999
....	chr11:6634903-6635159(-)$1	1	225	229	11.9999
....	chr2:102794388-102794687(+)$1	1	60	64	11.9999
)).)	chr20:43058460-43058737(+)$1	1	221	225	11.9999
))))	chr3:30733583-30733819(+)$1	1	175	179	11.9999
....	chr15:99502145-99502376(+)$1	1	82	86	11.9999
))))	chr4:187510036-187510315(-)$1	1	107	111	11.9999
(...	chr12:124081640-124081869(+)$1	1	21	25	11.9999
.).)	chr3:49571682-49571934(+)$1	1	39	43	11.9999
(..(	chr6:30711577-30711835(-)$1	1	34	38	11.9999
((((	chr14:89626927-89627182(-)$1	1	153	157	11.9999
....	chrX:118920374-118920655(-)$1	1	116	120	11.9999
.)))	chr19:36640645-36640958(+)$1	1	41	45	11.9999
...)	chr16:4012796-4013093(-)$1	1	179	183	11.9999
))).	chr22:43015345-43015620(-)$1	1	53	57	11.9999
..))	chr1:36806601-36806888(-)$1	1	201	205	11.9999
((((	chr2:242168855-242169104(-)$1	1	4	8	11.9999
....	chr17:80036167-80036405(-)$1	1	198	202	11.9999
))))	chr17:42397089-42397367(-)$1	1	75	79	11.9999
(((.	chr18:47017834-47018056(-)$1	1	94	98	11.9999
((((	chr20:30754080-30754314(+)$1	1	51	55	11.9999
))))	chr8:11701918-11702182(-)$1	1	172	176	11.9999
.)))	chr20:2126734-2126986(+)$1	1	244	248	11.9999
....	chr1:167759281-167759569(+)$1	1	22	26	11.9999
....	chr17:8378621-8378905(-)$1	1	211	215	11.9999
.(((	chr17:40277348-40277655(-)$1	1	109	113	11.9999
))).	chr14:69341412-69341674(-)$1	1	60	64	11.9999
...(	chr19:57323806-57324084(-)$1	1	92	96	11.9999
))))	chrX:131508152-131508452(-)$1	1	164	168	11.9999
)...	chr3:38022558-38022857(+)$1	1	98	102	11.9999
((((	chr22:21141324-21141572(+)$1	1	24	28	11.9999
....	chr19:10427383-10427680(-)$1	1	28	32	11.9999
...(	chr2:46611767-46612059(+)$1	1	3	7	11.9999
))).	chr12:113826918-113827271(+)$1	1	48	52	11.9999
((((	chr7:94295507-94295790(+)$1	1	38	42	11.9999

#PSSM
U : 0.97	u : 0.02	
C : 0.97	c : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	

#score	1079.9999999999995
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_transcript_m2_run2.nuc.txt

#NT
CCAGG	chr6:31504290-31504551(-)$1	261	175	180	14.9999
CCAGG	chr8:41561794-41562060(-)$1	266	141	146	14.9999
CCAGG	chr10:75549675-75549894(+)$1	219	211	216	14.9999
CCAGG	chr17:56408949-56409262(-)$1	313	36	41	14.9999
CCAGG	chr9:140007324-140007566(-)$1	242	177	182	14.9999
CCAGG	chr16:70291912-70292149(-)$1	237	40	45	14.9999
CCAGG	chr16:16196403-16196665(+)$1	262	76	81	14.9999
CCAGG	chr1:153723524-153723803(+)$1	279	136	141	14.9999
CCAGG	chr15:102515207-102515469(+)$1	262	9	14	14.9999
ccagg	chr18:33734798-33735053(+)$1	255	218	223	14.9999
CCAGG	chr8:22885136-22885364(-)$1	228	144	149	14.9999
CCAGG	chr19:1011070-1011414(-)$1	344	159	164	14.9999
CCAGG	chr17:73838515-73838757(-)$1	242	11	16	14.9999
CCAGG	chr17:79865554-79865792(-)$1	238	24	29	14.9999
CCAGG	chr16:28841218-28841478(+)$1	260	157	162	14.9999
CCAGG	chr22:20094691-20094960(+)$1	269	251	256	14.9999
CCAGG	chr12:116421151-116421406(-)$1	255	153	158	14.9999
CCAGG	chr2:74753771-74754027(-)$1	256	85	90	14.9999
CCAGG	chr22:22322944-22323199(-)$1	255	48	53	14.9999
CCAGG	chr6:160510850-160511122(+)$1	272	211	216	14.9999
CCAGG	chr5:177637055-177637308(+)$1	253	120	125	14.9999
CCAGG	chr6:30883101-30883331(+)$1	230	166	171	14.9999
CCAGG	chr8:145693017-145693264(+)$1	247	220	225	14.9999
CCAGG	chr19:50906716-50906951(+)$1	235	2	7	14.9999
CCAGG	chr16:1510627-1510868(-)$1	241	163	168	14.9999
CCAGG	chr19:56174881-56175107(+)$1	226	113	118	14.9999
CCAGG	chr12:132392498-132392777(+)$1	279	0	5	14.9999
CCAGG	chr10:75832457-75832697(+)$1	240	26	31	14.9999
CCAGG	chr11:71940865-71941126(+)$1	261	98	103	14.9999
CCAGG	chr1:22216414-22216648(-)$1	234	10	15	14.9999
CCAGG	chr19:46285656-46285912(-)$1	256	172	177	14.9999
CCAGG	chr19:46351918-46352183(-)$1	265	195	200	14.9999
CCAGG	chr20:39985917-39986157(+)$1	240	134	139	14.9999
CCAGG	chr22:24494163-24494401(+)$1	238	21	26	14.9999
CCAGG	chr1:12429644-12429858(+)$1	214	47	52	14.9999
CCAGG	chr6:32942138-32942369(+)$1	231	155	160	14.9999
CCAGG	chr12:53854694-53854947(+)$1	253	121	126	14.9999
CCAGG	chr22:45732117-45732395(+)$1	278	101	106	14.9999
CCAGG	chr12:120147955-120148207(-)$1	252	85	90	14.9999
CCAGG	chr17:80045460-80045682(-)$1	222	36	41	14.9999
CCAGG	chr7:150771434-150771676(+)$1	242	137	142	14.9999
CCAGG	chr16:84216748-84217018(-)$1	270	186	191	14.9999
CCAGG	chr22:19885507-19885753(-)$1	246	188	193	14.9999
CCAGG	chr8:41545928-41546191(-)$1	263	159	164	14.9999
CCAGG	chr22:50897957-50898261(-)$1	304	170	175	14.9999
CCAGG	chr22:23523131-23523350(+)$1	219	165	170	14.9999
CCAGG	chr1:32793031-32793266(+)$1	235	226	231	14.9999
CCAGG	chr22:22317019-22317271(-)$1	252	149	154	14.9999
CCAGG	chr3:183882784-183883022(+)$1	238	41	46	14.9999
CCAGG	chr17:78264305-78264569(+)$1	264	218	223	14.9999
CCAGG	chr6:31935389-31935615(+)$1	226	98	103	14.9999
CCAGG	chr12:56565554-56565789(-)$1	235	64	69	14.9999
CCAGG	chr15:91461485-91461718(+)$1	233	29	34	14.9999
CCAGG	chr12:110782595-110782859(+)$1	264	91	96	14.9999
CCAGG	chr9:131001650-131001894(+)$1	244	156	161	14.9999
CCAGG	chr14:102496483-102496716(+)$1	233	32	37	14.9999
CCAGG	chr21:47647364-47647586(-)$1	222	117	122	14.9999
CCagg	chr1:249150388-249150659(-)$1	271	72	77	14.9999
CCAGG	chr16:89816166-89816410(-)$1	244	162	167	14.9999
CCAGG	chr11:433056-433349(-)$1	293	62	67	14.9999
CCAGG	chr20:45923307-45923558(-)$1	251	143	148	14.9999

#otherMatches

#Struct PSSM
cc]cc	chr17:40490648-40490921(-)$1	273	126	131	14.9999
:::cc	chr6:31504290-31504551(-)$1	261	175	180	14.9999
ffffD	chr8:41561794-41562060(-)$1	266	141	146	14.9999
:::DD	chr10:75549675-75549894(+)$1	219	211	216	14.9999
ggggg	chr17:56408949-56409262(-)$1	313	36	41	14.9999
bb]cc	chr9:140007324-140007566(-)$1	242	177	182	14.9999
tttbb	chr16:70291912-70292149(-)$1	237	40	45	14.9999
bb!!e	chr16:16196403-16196665(+)$1	262	76	81	14.9999
c[ddd	chr1:153723524-153723803(+)$1	279	136	141	14.9999
cc[cc	chr15:102515207-102515469(+)$1	262	9	14	14.9999
dddff	chr18:33734798-33735053(+)$1	255	218	223	14.9999
dddBB	chr8:22885136-22885364(-)$1	228	144	149	14.9999
cc:ee	chr19:1011070-1011414(-)$1	344	159	164	14.9999
BB{GG	chr17:73838515-73838757(-)$1	242	11	16	14.9999
LDDDD	chr17:79865554-79865792(-)$1	238	24	29	14.9999
DDDEE	chr16:28841218-28841478(+)$1	260	157	162	14.9999
]bb]c	chr22:20094691-20094960(+)$1	269	251	256	14.9999
ddddd	chr12:116421151-116421406(-)$1	255	153	158	14.9999
[cccq	chr2:74753771-74754027(-)$1	256	85	90	14.9999
LLIII	chr22:22322944-22323199(-)$1	255	48	53	14.9999
:::a[	chr6:160510850-160511122(+)$1	272	211	216	14.9999
6666d	chr5:177637055-177637308(+)$1	253	120	125	14.9999
lllee	chr6:30883101-30883331(+)$1	230	166	171	14.9999
GGGGG	chr8:145693017-145693264(+)$1	247	220	225	14.9999
:::ee	chr19:50906716-50906951(+)$1	235	2	7	14.9999
===cc	chr16:1510627-1510868(-)$1	241	163	168	14.9999
EEEEE	chr19:56174881-56175107(+)$1	226	113	118	14.9999
ddddn	chr12:132392498-132392777(+)$1	279	0	5	14.9999
33ccc	chr10:75832457-75832697(+)$1	240	26	31	14.9999
SSSGG	chr11:71940865-71941126(+)$1	261	98	103	14.9999
EEEKK	chr1:22216414-22216648(-)$1	234	10	15	14.9999
f::::	chr19:46285656-46285912(-)$1	256	172	177	14.9999
dhhhh	chr19:46351918-46352183(-)$1	265	195	200	14.9999
yyyyy	chr20:39985917-39986157(+)$1	240	134	139	14.9999
FFFFF	chr22:24494163-24494401(+)$1	238	21	26	14.9999
eeeeb	chr1:12429644-12429858(+)$1	214	47	52	14.9999
EEeee	chr6:32942138-32942369(+)$1	231	155	160	14.9999
BB:gg	chr12:53854694-53854947(+)$1	253	121	126	14.9999
cbbmm	chr22:45732117-45732395(+)$1	278	101	106	14.9999
HKKBB	chr12:120147955-120148207(-)$1	252	85	90	14.9999
mmmmc	chr17:80045460-80045682(-)$1	222	36	41	14.9999
DD{BB	chr7:150771434-150771676(+)$1	242	137	142	14.9999
mbb]d	chr16:84216748-84217018(-)$1	270	186	191	14.9999
ooooa	chr22:19885507-19885753(-)$1	246	188	193	14.9999
EEEEE	chr8:41545928-41546191(-)$1	263	159	164	14.9999
:::dd	chr22:50897957-50898261(-)$1	304	170	175	14.9999
666a]	chr22:23523131-23523350(+)$1	219	165	170	14.9999
:DDDD	chr1:32793031-32793266(+)$1	235	226	231	14.9999
ZEEEE	chr22:22317019-22317271(-)$1	252	149	154	14.9999
cc:ee	chr3:183882784-183883022(+)$1	238	41	46	14.9999
fffff	chr17:78264305-78264569(+)$1	264	218	223	14.9999
pppdd	chr6:31935389-31935615(+)$1	226	98	103	14.9999
EEEEE	chr12:56565554-56565789(-)$1	235	64	69	14.9999
mdddd	chr15:91461485-91461718(+)$1	233	29	34	14.9999
555dd	chr12:110782595-110782859(+)$1	264	91	96	14.9999
xxxxx	chr9:131001650-131001894(+)$1	244	156	161	14.9999
444cc	chr14:102496483-102496716(+)$1	233	32	37	14.9999
glllg	chr21:47647364-47647586(-)$1	222	117	122	14.9999
ccooo	chr1:249150388-249150659(-)$1	271	72	77	14.9999
fffff	chr16:89816166-89816410(-)$1	244	162	167	14.9999
e[ccc	chr11:433056-433349(-)$1	293	62	67	14.9999
hhhhh	chr20:45923307-45923558(-)$1	251	143	148	14.9999

#DB
)).))	chr17:40490648-40490921(-)$1	1	126	131	14.9999
...((	chr6:31504290-31504551(-)$1	1	175	180	14.9999
))))(	chr8:41561794-41562060(-)$1	1	141	146	14.9999
...))	chr10:75549675-75549894(+)$1	1	211	216	14.9999
)))))	chr17:56408949-56409262(-)$1	1	36	41	14.9999
)).))	chr9:140007324-140007566(-)$1	1	177	182	14.9999
...))	chr16:70291912-70292149(-)$1	1	40	45	14.9999
((..(	chr16:16196403-16196665(+)$1	1	76	81	14.9999
(.(((	chr1:153723524-153723803(+)$1	1	136	141	14.9999
((.((	chr15:102515207-102515469(+)$1	1	9	14	14.9999
)))((	chr18:33734798-33735053(+)$1	1	218	223	14.9999
)))))	chr8:22885136-22885364(-)$1	1	144	149	14.9999
)).((	chr19:1011070-1011414(-)$1	1	159	164	14.9999
((.((	chr17:73838515-73838757(-)$1	1	11	16	14.9999
.((((	chr17:79865554-79865792(-)$1	1	24	29	14.9999
)))))	chr16:28841218-28841478(+)$1	1	157	162	14.9999
.)).)	chr22:20094691-20094960(+)$1	1	251	256	14.9999
(((((	chr12:116421151-116421406(-)$1	1	153	158	14.9999
.(((.	chr2:74753771-74754027(-)$1	1	85	90	14.9999
..(((	chr22:22322944-22323199(-)$1	1	48	53	14.9999
...(.	chr6:160510850-160511122(+)$1	1	211	216	14.9999
....)	chr5:177637055-177637308(+)$1	1	120	125	14.9999
...))	chr6:30883101-30883331(+)$1	1	166	171	14.9999
)))))	chr8:145693017-145693264(+)$1	1	220	225	14.9999
...((	chr19:50906716-50906951(+)$1	1	2	7	14.9999
(((((	chr16:1510627-1510868(-)$1	1	163	168	14.9999
(((((	chr19:56174881-56175107(+)$1	1	113	118	14.9999
((((.	chr12:132392498-132392777(+)$1	1	0	5	14.9999
..)))	chr10:75832457-75832697(+)$1	1	26	31	14.9999
...((	chr11:71940865-71941126(+)$1	1	98	103	14.9999
(((..	chr1:22216414-22216648(-)$1	1	10	15	14.9999
)....	chr19:46285656-46285912(-)$1	1	172	177	14.9999
)))))	chr19:46351918-46352183(-)$1	1	195	200	14.9999
.....	chr20:39985917-39986157(+)$1	1	134	139	14.9999
(((((	chr22:24494163-24494401(+)$1	1	21	26	14.9999
(((((	chr1:12429644-12429858(+)$1	1	47	52	14.9999
(((((	chr6:32942138-32942369(+)$1	1	155	160	14.9999
)).((	chr12:53854694-53854947(+)$1	1	121	126	14.9999
(((..	chr22:45732117-45732395(+)$1	1	101	106	14.9999
(..((	chr12:120147955-120148207(-)$1	1	85	90	14.9999
....)	chr17:80045460-80045682(-)$1	1	36	41	14.9999
((.((	chr7:150771434-150771676(+)$1	1	137	142	14.9999
.)).)	chr16:84216748-84217018(-)$1	1	186	191	14.9999
....)	chr22:19885507-19885753(-)$1	1	188	193	14.9999
)))))	chr8:41545928-41546191(-)$1	1	159	164	14.9999
...((	chr22:50897957-50898261(-)$1	1	170	175	14.9999
...).	chr22:23523131-23523350(+)$1	1	165	170	14.9999
.))))	chr1:32793031-32793266(+)$1	1	226	231	14.9999
.))))	chr22:22317019-22317271(-)$1	1	149	154	14.9999
)).((	chr3:183882784-183883022(+)$1	1	41	46	14.9999
(((((	chr17:78264305-78264569(+)$1	1	218	223	14.9999
...))	chr6:31935389-31935615(+)$1	1	98	103	14.9999
(((((	chr12:56565554-56565789(-)$1	1	64	69	14.9999
.))))	chr15:91461485-91461718(+)$1	1	29	34	14.9999
...))	chr12:110782595-110782859(+)$1	1	91	96	14.9999
.....	chr9:131001650-131001894(+)$1	1	156	161	14.9999
...))	chr14:102496483-102496716(+)$1	1	32	37	14.9999
(...)	chr21:47647364-47647586(-)$1	1	117	122	14.9999
((...	chr1:249150388-249150659(-)$1	1	72	77	14.9999
)))))	chr16:89816166-89816410(-)$1	1	162	167	14.9999
(.(((	chr11:433056-433349(-)$1	1	62	67	14.9999
(((((	chr20:45923307-45923558(-)$1	1	143	148	14.9999

#PSSM
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	929.9999999999999
#seq	62
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_transcript_m2_run2.nuc.txt

#NT
UUU	chr2:203141063-203141333(+)$1	270	25	28	8.9999
UUU	chrX:135961284-135961534(-)$1	250	29	32	8.9999
UUU	chr10:101996838-101997095(-)$1	257	31	34	8.9999
UUU	chr11:62621059-62621283(-)$1	224	19	22	8.9999
UUU	chr19:50000891-50001151(+)$1	260	96	99	8.9999
UUU	chr5:170814890-170815110(+)$1	220	13	16	8.9999
UUU	chr2:85772082-85772330(+)$1	248	10	13	8.9999
UUU	chr17:20787732-20787987(+)$1	255	92	95	8.9999
UUU	chr16:58582312-58582561(-)$1	249	33	36	8.9999
UUU	chr8:97243080-97243373(-)$1	293	8	11	8.9999
UUU	chr2:232321058-232321336(-)$1	278	45	48	8.9999
UUU	chr17:8076658-8076871(-)$1	213	102	105	8.9999
UUU	chr12:104341332-104341586(+)$1	254	25	28	8.9999
UUU	chr2:234197409-234197685(+)$1	276	118	121	8.9999
uuu	chr6:16266156-16266387(+)$1	231	59	62	8.9999
UUU	chr15:66793498-66793748(-)$1	250	90	93	8.9999
UUU	chr17:16344433-16344726(+)$1	293	169	172	8.9999
UUU	chr5:98236409-98236655(-)$1	246	92	95	8.9999
UUU	chr5:149827123-149827370(-)$1	247	32	35	8.9999
uuu	chr7:119433948-119434187(-)$1	239	8	11	8.9999
UUU	chrX:135961255-135961484(-)$1	229	65	68	8.9999
UUU	chr3:14239433-14239695(+)$1	262	0	3	8.9999
UUU	chr13:92002695-92002962(+)$1	267	4	7	8.9999
UUU	chr11:93454771-93454998(+)$1	227	107	110	8.9999
UUU	chr12:104333186-104333467(+)$1	281	2	5	8.9999
UUU	chr20:47896780-47897018(+)$1	238	42	45	8.9999
uuu	chr11:5482917-5483220(-)$1	303	177	180	8.9999
UUU	chr1:173834402-173834691(-)$1	289	18	21	8.9999
UUU	chr12:6619583-6619815(+)$1	232	116	119	8.9999
UUU	chr20:30369971-30370208(+)$1	237	73	76	8.9999
UUU	chr5:137896629-137896886(-)$1	257	39	42	8.9999
UUU	chr5:138614399-138614638(+)$1	239	58	61	8.9999
UUU	chr11:5290930-5291144(-)$1	214	32	35	8.9999
UUU	chrX:118921214-118921467(-)$1	253	14	17	8.9999
UUU	chr19:49994402-49994613(+)$1	211	129	132	8.9999
uuu	chr8:33370954-33371172(+)$1	218	42	45	8.9999
UUU	chr9:139621104-139621371(-)$1	267	22	25	8.9999
UUU	chr11:93454852-93455079(+)$1	227	26	29	8.9999
UUU	chr3:186504429-186504650(+)$1	221	30	33	8.9999
UUU	chr11:75115434-75115675(+)$1	241	1	4	8.9999
UUU	chr12:7076447-7076658(-)$1	211	51	54	8.9999
UUU	chr6:31804772-31805004(+)$1	232	17	20	8.9999
UUU	chr17:8076671-8076902(-)$1	231	133	136	8.9999
uuu	chr7:119436974-119437230(-)$1	256	49	52	8.9999
UUU	chr13:92003172-92003413(+)$1	241	56	59	8.9999
UUU	chr11:93464575-93464836(-)$1	261	2	5	8.9999
uuu	chr12:104336752-104336967(+)$1	215	8	11	8.9999
UUU	chr16:2814229-2814474(+)$1	245	64	67	8.9999
UUU	chr16:31197554-31197823(+)$1	269	63	66	8.9999
UUU	chr6:31785376-31785663(+)$1	287	88	91	8.9999
UUU	chr5:40832659-40832921(-)$1	262	11	14	8.9999
UUU	chr10:70514848-70515083(+)$1	235	41	44	8.9999
UUU	chr7:98479293-98479527(+)$1	234	1	4	8.9999
UUU	chr11:46783863-46784092(-)$1	229	36	39	8.9999
UUU	chr17:38555238-38555461(-)$1	223	0	3	8.9999
UUU	chr10:71148873-71149149(+)$1	276	66	69	8.9999
UUU	chr1:29505211-29505498(-)$1	287	25	28	8.9999
uuu	chr7:98479352-98479571(+)$1	219	20	23	8.9999
UUU	chr20:47896759-47896974(+)$1	215	19	22	8.9999
UUU	chr1:45244215-45244460(+)$1	245	149	152	8.9999
UUU	chr11:93454883-93455092(+)$1	209	74	77	8.9999
UUU	chr2:86362952-86363221(+)$1	269	18	21	8.9999
UUU	chr17:79801302-79801592(-)$1	290	36	39	8.9999
uuu	chr1:28833922-28834184(+)$1	262	48	51	8.9999
UUU	chr5:140098444-140098657(+)$1	213	9	12	8.9999
UUU	chr16:2204933-2205214(-)$1	281	13	16	8.9999
UUU	chr1:173833900-173834141(-)$1	241	77	80	8.9999
UUU	chr12:21788376-21788670(-)$1	294	11	14	8.9999
UUU	chr17:27050364-27050584(+)$1	220	13	16	8.9999
UUU	chr1:173834676-173834916(-)$1	240	27	30	8.9999
UUU	chr11:75111333-75111659(+)$1	326	27	30	8.9999
UUU	chr12:76449740-76449948(-)$1	208	85	88	8.9999
UUU	chr6:31797644-31797946(+)$1	302	14	17	8.9999
UUU	chr10:101996703-101996936(-)$1	233	42	45	8.9999
UUU	chr14:56083134-56083445(+)$1	311	0	3	8.9999
UUU	chr16:89042523-89042813(-)$1	290	266	269	8.9999
UUU	chr7:119430712-119430948(-)$1	236	16	19	8.9999
UUU	chr6:26123922-26124219(-)$1	297	56	59	8.9999
UUU	chr17:7480119-7480358(+)$1	239	135	138	8.9999
UUU	chr2:207026852-207027184(+)$1	332	0	3	8.9999
uuu	chr8:33370926-33371150(+)$1	224	70	73	8.9999
UUU	chr2:47388758-47389000(-)$1	242	146	149	8.9999
UUU	chr22:50011508-50011768(-)$1	260	201	204	8.9999
UUU	chr17:20801663-20801920(+)$1	257	74	77	8.9999
UUU	chr11:93466298-93466574(-)$1	276	0	3	8.9999
UUU	chr2:29149863-29150088(+)$1	225	35	38	8.9999
UUU	chr1:109642979-109643186(+)$1	207	10	13	8.9999
UUU	chr3:160232629-160232862(-)$1	233	200	203	8.9999
uuu	chr6:16266041-16266294(+)$1	253	20	23	8.9999
UUU	chr3:186502533-186502753(+)$1	220	38	41	8.9999
UUU	chr6:27809333-27809577(+)$1	244	70	73	8.9999
UUU	chr17:8076713-8076964(-)$1	251	21	24	8.9999
UUU	chr3:52725323-52725562(+)$1	239	8	11	8.9999
UUU	chr3:39449885-39450131(+)$1	246	80	83	8.9999
UUU	chr1:8934783-8935001(-)$1	218	13	16	8.9999

#otherMatches

#Struct PSSM
FFF	chr7:91632338-91632634(+)$1	296	15	18	8.9999
$$$	chr2:203141063-203141333(+)$1	270	25	28	8.9999
RRR	chrX:135961284-135961534(-)$1	250	29	32	8.9999
:ee	chr10:101996838-101997095(-)$1	257	31	34	8.9999
mee	chr11:62621059-62621283(-)$1	224	19	22	8.9999
fff	chr19:50000891-50001151(+)$1	260	96	99	8.9999
e::	chr5:170814890-170815110(+)$1	220	13	16	8.9999
ggg	chr2:85772082-85772330(+)$1	248	10	13	8.9999
III	chr17:20787732-20787987(+)$1	255	92	95	8.9999
###	chr16:58582312-58582561(-)$1	249	33	36	8.9999
hhh	chr8:97243080-97243373(-)$1	293	8	11	8.9999
f::	chr2:232321058-232321336(-)$1	278	45	48	8.9999
nnb	chr17:8076658-8076871(-)$1	213	102	105	8.9999
ppp	chr12:104341332-104341586(+)$1	254	25	28	8.9999
dd3	chr2:234197409-234197685(+)$1	276	118	121	8.9999
eee	chr6:16266156-16266387(+)$1	231	59	62	8.9999
bb4	chr15:66793498-66793748(-)$1	250	90	93	8.9999
ddd	chr17:16344433-16344726(+)$1	293	169	172	8.9999
ggg	chr5:98236409-98236655(-)$1	246	92	95	8.9999
:::	chr5:149827123-149827370(-)$1	247	32	35	8.9999
###	chr7:119433948-119434187(-)$1	239	8	11	8.9999
##e	chrX:135961255-135961484(-)$1	229	65	68	8.9999
:::	chr3:14239433-14239695(+)$1	262	0	3	8.9999
ell	chr13:92002695-92002962(+)$1	267	4	7	8.9999
EEE	chr11:93454771-93454998(+)$1	227	107	110	8.9999
:::	chr12:104333186-104333467(+)$1	281	2	5	8.9999
GGG	chr20:47896780-47897018(+)$1	238	42	45	8.9999
}GG	chr11:5482917-5483220(-)$1	303	177	180	8.9999
===	chr1:173834402-173834691(-)$1	289	18	21	8.9999
ccc	chr12:6619583-6619815(+)$1	232	116	119	8.9999
ddd	chr20:30369971-30370208(+)$1	237	73	76	8.9999
CCC	chr5:137896629-137896886(-)$1	257	39	42	8.9999
iii	chr5:138614399-138614638(+)$1	239	58	61	8.9999
ccc	chr11:5290930-5291144(-)$1	214	32	35	8.9999
ff:	chrX:118921214-118921467(-)$1	253	14	17	8.9999
ooo	chr19:49994402-49994613(+)$1	211	129	132	8.9999
===	chr8:33370954-33371172(+)$1	218	42	45	8.9999
CCC	chr9:139621104-139621371(-)$1	267	22	25	8.9999
D{B	chr11:93454852-93455079(+)$1	227	26	29	8.9999
ggg	chr3:186504429-186504650(+)$1	221	30	33	8.9999
:::	chr11:75115434-75115675(+)$1	241	1	4	8.9999
iii	chr12:7076447-7076658(-)$1	211	51	54	8.9999
b""	chr6:31804772-31805004(+)$1	232	17	20	8.9999
nnb	chr17:8076671-8076902(-)$1	231	133	136	8.9999
ffm	chr7:119436974-119437230(-)$1	256	49	52	8.9999
d[b	chr13:92003172-92003413(+)$1	241	56	59	8.9999
::E	chr11:93464575-93464836(-)$1	261	2	5	8.9999
ffh	chr12:104336752-104336967(+)$1	215	8	11	8.9999
888	chr16:2814229-2814474(+)$1	245	64	67	8.9999
ggg	chr16:31197554-31197823(+)$1	269	63	66	8.9999
""h	chr6:31785376-31785663(+)$1	287	88	91	8.9999
ood	chr5:40832659-40832921(-)$1	262	11	14	8.9999
ggg	chr10:70514848-70515083(+)$1	235	41	44	8.9999
:::	chr7:98479293-98479527(+)$1	234	1	4	8.9999
LLL	chr11:46783863-46784092(-)$1	229	36	39	8.9999
FFF	chr17:38555238-38555461(-)$1	223	0	3	8.9999
ggg	chr10:71148873-71149149(+)$1	276	66	69	8.9999
ggg	chr1:29505211-29505498(-)$1	287	25	28	8.9999
!cc	chr7:98479352-98479571(+)$1	219	20	23	8.9999
mmd	chr20:47896759-47896974(+)$1	215	19	22	8.9999
:II	chr1:45244215-45244460(+)$1	245	149	152	8.9999
JJJ	chr11:93454883-93455092(+)$1	209	74	77	8.9999
LLL	chr2:86362952-86363221(+)$1	269	18	21	8.9999
III	chr17:79801302-79801592(-)$1	290	36	39	8.9999
fff	chr1:28833922-28834184(+)$1	262	48	51	8.9999
lll	chr5:140098444-140098657(+)$1	213	9	12	8.9999
:::	chr16:2204933-2205214(-)$1	281	13	16	8.9999
fff	chr1:173833900-173834141(-)$1	241	77	80	8.9999
:::	chr12:21788376-21788670(-)$1	294	11	14	8.9999
EEE	chr17:27050364-27050584(+)$1	220	13	16	8.9999
LEE	chr1:173834676-173834916(-)$1	240	27	30	8.9999
mmi	chr11:75111333-75111659(+)$1	326	27	30	8.9999
===	chr12:76449740-76449948(-)$1	208	85	88	8.9999
:::	chr6:31797644-31797946(+)$1	302	14	17	8.9999
:::	chr10:101996703-101996936(-)$1	233	42	45	8.9999
FFF	chr14:56083134-56083445(+)$1	311	0	3	8.9999
hhh	chr16:89042523-89042813(-)$1	290	266	269	8.9999
MMM	chr7:119430712-119430948(-)$1	236	16	19	8.9999
cc:	chr6:26123922-26124219(-)$1	297	56	59	8.9999
"""	chr17:7480119-7480358(+)$1	239	135	138	8.9999
FFF	chr2:207026852-207027184(+)$1	332	0	3	8.9999
===	chr8:33370926-33371150(+)$1	224	70	73	8.9999
eee	chr2:47388758-47389000(-)$1	242	146	149	8.9999
:::	chr22:50011508-50011768(-)$1	260	201	204	8.9999
JJJ	chr17:20801663-20801920(+)$1	257	74	77	8.9999
:::	chr11:93466298-93466574(-)$1	276	0	3	8.9999
ggg	chr2:29149863-29150088(+)$1	225	35	38	8.9999
:CC	chr1:109642979-109643186(+)$1	207	10	13	8.9999
ooo	chr3:160232629-160232862(-)$1	233	200	203	8.9999
hh$	chr6:16266041-16266294(+)$1	253	20	23	8.9999
eee	chr3:186502533-186502753(+)$1	220	38	41	8.9999
eee	chr6:27809333-27809577(+)$1	244	70	73	8.9999
[dd	chr17:8076713-8076964(-)$1	251	21	24	8.9999
NNN	chr3:52725323-52725562(+)$1	239	8	11	8.9999
ggg	chr3:39449885-39450131(+)$1	246	80	83	8.9999
cpp	chr1:8934783-8935001(-)$1	218	13	16	8.9999

#DB
(((	chr7:91632338-91632634(+)$1	1	15	18	8.9999
...	chr2:203141063-203141333(+)$1	1	25	28	8.9999
...	chrX:135961284-135961534(-)$1	1	29	32	8.9999
.((	chr10:101996838-101997095(-)$1	1	31	34	8.9999
.))	chr11:62621059-62621283(-)$1	1	19	22	8.9999
)))	chr19:50000891-50001151(+)$1	1	96	99	8.9999
)..	chr5:170814890-170815110(+)$1	1	13	16	8.9999
(((	chr2:85772082-85772330(+)$1	1	10	13	8.9999
(((	chr17:20787732-20787987(+)$1	1	92	95	8.9999
...	chr16:58582312-58582561(-)$1	1	33	36	8.9999
(((	chr8:97243080-97243373(-)$1	1	8	11	8.9999
)..	chr2:232321058-232321336(-)$1	1	45	48	8.9999
..)	chr17:8076658-8076871(-)$1	1	102	105	8.9999
...	chr12:104341332-104341586(+)$1	1	25	28	8.9999
)).	chr2:234197409-234197685(+)$1	1	118	121	8.9999
)))	chr6:16266156-16266387(+)$1	1	59	62	8.9999
)).	chr15:66793498-66793748(-)$1	1	90	93	8.9999
)))	chr17:16344433-16344726(+)$1	1	169	172	8.9999
(((	chr5:98236409-98236655(-)$1	1	92	95	8.9999
...	chr5:149827123-149827370(-)$1	1	32	35	8.9999
...	chr7:119433948-119434187(-)$1	1	8	11	8.9999
..(	chrX:135961255-135961484(-)$1	1	65	68	8.9999
...	chr3:14239433-14239695(+)$1	1	0	3	8.9999
(..	chr13:92002695-92002962(+)$1	1	4	7	8.9999
)))	chr11:93454771-93454998(+)$1	1	107	110	8.9999
...	chr12:104333186-104333467(+)$1	1	2	5	8.9999
(((	chr20:47896780-47897018(+)$1	1	42	45	8.9999
.))	chr11:5482917-5483220(-)$1	1	177	180	8.9999
(((	chr1:173834402-173834691(-)$1	1	18	21	8.9999
)))	chr12:6619583-6619815(+)$1	1	116	119	8.9999
)))	chr20:30369971-30370208(+)$1	1	73	76	8.9999
(((	chr5:137896629-137896886(-)$1	1	39	42	8.9999
)))	chr5:138614399-138614638(+)$1	1	58	61	8.9999
(((	chr11:5290930-5291144(-)$1	1	32	35	8.9999
)).	chrX:118921214-118921467(-)$1	1	14	17	8.9999
...	chr19:49994402-49994613(+)$1	1	129	132	8.9999
)))	chr8:33370954-33371172(+)$1	1	42	45	8.9999
(((	chr9:139621104-139621371(-)$1	1	22	25	8.9999
(.(	chr11:93454852-93455079(+)$1	1	26	29	8.9999
(((	chr3:186504429-186504650(+)$1	1	30	33	8.9999
...	chr11:75115434-75115675(+)$1	1	1	4	8.9999
(((	chr12:7076447-7076658(-)$1	1	51	54	8.9999
(..	chr6:31804772-31805004(+)$1	1	17	20	8.9999
..)	chr17:8076671-8076902(-)$1	1	133	136	8.9999
((.	chr7:119436974-119437230(-)$1	1	49	52	8.9999
(.(	chr13:92003172-92003413(+)$1	1	56	59	8.9999
..(	chr11:93464575-93464836(-)$1	1	2	5	8.9999
(((	chr12:104336752-104336967(+)$1	1	8	11	8.9999
...	chr16:2814229-2814474(+)$1	1	64	67	8.9999
)))	chr16:31197554-31197823(+)$1	1	63	66	8.9999
..(	chr6:31785376-31785663(+)$1	1	88	91	8.9999
..)	chr5:40832659-40832921(-)$1	1	11	14	8.9999
(((	chr10:70514848-70515083(+)$1	1	41	44	8.9999
...	chr7:98479293-98479527(+)$1	1	1	4	8.9999
...	chr11:46783863-46784092(-)$1	1	36	39	8.9999
(((	chr17:38555238-38555461(-)$1	1	0	3	8.9999
(((	chr10:71148873-71149149(+)$1	1	66	69	8.9999
)))	chr1:29505211-29505498(-)$1	1	25	28	8.9999
.((	chr7:98479352-98479571(+)$1	1	20	23	8.9999
..)	chr20:47896759-47896974(+)$1	1	19	22	8.9999
.))	chr1:45244215-45244460(+)$1	1	149	152	8.9999
(((	chr11:93454883-93455092(+)$1	1	74	77	8.9999
...	chr2:86362952-86363221(+)$1	1	18	21	8.9999
(((	chr17:79801302-79801592(-)$1	1	36	39	8.9999
(((	chr1:28833922-28834184(+)$1	1	48	51	8.9999
...	chr5:140098444-140098657(+)$1	1	9	12	8.9999
...	chr16:2204933-2205214(-)$1	1	13	16	8.9999
(((	chr1:173833900-173834141(-)$1	1	77	80	8.9999
...	chr12:21788376-21788670(-)$1	1	11	14	8.9999
(((	chr17:27050364-27050584(+)$1	1	13	16	8.9999
.((	chr1:173834676-173834916(-)$1	1	27	30	8.9999
..)	chr11:75111333-75111659(+)$1	1	27	30	8.9999
)))	chr12:76449740-76449948(-)$1	1	85	88	8.9999
...	chr6:31797644-31797946(+)$1	1	14	17	8.9999
...	chr10:101996703-101996936(-)$1	1	42	45	8.9999
(((	chr14:56083134-56083445(+)$1	1	0	3	8.9999
)))	chr16:89042523-89042813(-)$1	1	266	269	8.9999
...	chr7:119430712-119430948(-)$1	1	16	19	8.9999
)).	chr6:26123922-26124219(-)$1	1	56	59	8.9999
...	chr17:7480119-7480358(+)$1	1	135	138	8.9999
(((	chr2:207026852-207027184(+)$1	1	0	3	8.9999
)))	chr8:33370926-33371150(+)$1	1	70	73	8.9999
)))	chr2:47388758-47389000(-)$1	1	146	149	8.9999
...	chr22:50011508-50011768(-)$1	1	201	204	8.9999
(((	chr17:20801663-20801920(+)$1	1	74	77	8.9999
...	chr11:93466298-93466574(-)$1	1	0	3	8.9999
(((	chr2:29149863-29150088(+)$1	1	35	38	8.9999
.((	chr1:109642979-109643186(+)$1	1	10	13	8.9999
...	chr3:160232629-160232862(-)$1	1	200	203	8.9999
((.	chr6:16266041-16266294(+)$1	1	20	23	8.9999
)))	chr3:186502533-186502753(+)$1	1	38	41	8.9999
(((	chr6:27809333-27809577(+)$1	1	70	73	8.9999
.((	chr17:8076713-8076964(-)$1	1	21	24	8.9999
...	chr3:52725323-52725562(+)$1	1	8	11	8.9999
)))	chr3:39449885-39450131(+)$1	1	80	83	8.9999
(..	chr1:8934783-8935001(-)$1	1	13	16	8.9999

#PSSM
U : 0.89	u : 0.10	
U : 0.89	u : 0.10	
U : 0.89	u : 0.10	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_UTR_m2_run2.nuc.txt

#NT
CUG	chr3:49716184-49716401(+)$1	217	8	11	8.9999
CUG	chr19:41250433-41250684(-)$1	251	22	25	8.9999
CUG	chr17:40729093-40729351(-)$1	258	2	5	8.9999
CUG	chr2:197541745-197542014(+)$1	269	29	32	8.9999
CUG	chr11:3400130-3400456(-)$1	326	2	5	8.9999
CUG	chr22:38004744-38005004(+)$1	260	77	80	8.9999
CUG	chr3:47890682-47890940(+)$1	258	40	43	8.9999
CUG	chr16:66785289-66785601(-)$1	312	93	96	8.9999
CUG	chr9:90264733-90264986(+)$1	253	11	14	8.9999
CUG	chr19:35501117-35501405(+)$1	288	57	60	8.9999
CUG	chr4:52709229-52709546(+)$1	317	21	24	8.9999
CUG	chr3:52019137-52019383(+)$1	246	21	24	8.9999
CUG	chr7:100880876-100881139(-)$1	263	34	37	8.9999
CUG	chr14:23945371-23945624(+)$1	253	3	6	8.9999
CUG	chr19:46124640-46124888(-)$1	248	19	22	8.9999
CUG	chr16:67862473-67862720(-)$1	247	66	69	8.9999
CUG	chr3:9860468-9860713(+)$1	245	6	9	8.9999
CUG	chr3:171830140-171830374(+)$1	234	65	68	8.9999
CUG	chr6:43572913-43573154(+)$1	241	89	92	8.9999
cug	chr7:99952665-99952964(+)$1	299	28	31	8.9999
CUG	chr12:57625459-57625717(+)$1	258	5	8	8.9999
CUG	chr17:33325560-33325842(+)$1	282	34	37	8.9999
CUG	chr12:56567500-56567734(-)$1	234	59	62	8.9999
cug	chr17:73143613-73143850(-)$1	237	5	8	8.9999
CUG	chr21:45733421-45733666(+)$1	245	13	16	8.9999
CUG	chr16:47497751-47498023(+)$1	272	13	16	8.9999
CUG	chr16:8948860-8949176(+)$1	316	5	8	8.9999
CUG	chr6:41753767-41754003(+)$1	236	16	19	8.9999
CUG	chr17:73663347-73663576(+)$1	229	19	22	8.9999
CUG	chr19:54692034-54692303(-)$1	269	63	66	8.9999
CUG	chr1:1250802-1251036(-)$1	234	13	16	8.9999
CUG	chr11:72726754-72727034(-)$1	280	131	134	8.9999
CUG	chr22:46671044-46671286(+)$1	242	16	19	8.9999
CUG	chr2:74718557-74718798(+)$1	241	56	59	8.9999
CUG	chr19:15491228-15491448(-)$1	220	10	13	8.9999
CUG	chr19:47880302-47880560(+)$1	258	8	11	8.9999
CUG	chr16:28855188-28855406(-)$1	218	7	10	8.9999
CUG	chr4:1952766-1953040(+)$1	274	6	9	8.9999
CUG	chr16:70517763-70517972(-)$1	209	11	14	8.9999
CUG	chr16:720385-720657(+)$1	272	183	186	8.9999
CUG	chr16:89858233-89858464(-)$1	231	0	3	8.9999
CUG	chr5:6604281-6604489(-)$1	208	29	32	8.9999
CUG	chr4:2252757-2253013(-)$1	256	10	13	8.9999
CUG	chr11:65766911-65767226(-)$1	315	49	52	8.9999
CUG	chr3:49051791-49052032(+)$1	241	1	4	8.9999
CUG	chr15:76196280-76196547(+)$1	267	0	3	8.9999
CUG	chr17:4579946-4580188(-)$1	242	1	4	8.9999
CUG	chrX:153281892-153282192(-)$1	300	12	15	8.9999
CUG	chr20:57246120-57246430(+)$1	310	41	44	8.9999
CUG	chr3:48561021-48561363(-)$1	342	8	11	8.9999
CUG	chr17:72859237-72859478(-)$1	241	14	17	8.9999
CUG	chr22:40762339-40762627(+)$1	288	26	29	8.9999
CUG	chr17:40266275-40266512(-)$1	237	59	62	8.9999
CUG	chr7:100882973-100883283(-)$1	310	14	17	8.9999
CUG	chr14:74752993-74753237(-)$1	244	20	23	8.9999
CUG	chr17:46048662-46048873(+)$1	211	104	107	8.9999
CUG	chr11:14532319-14532571(-)$1	252	103	106	8.9999
CUG	chr1:45797320-45797605(-)$1	285	93	96	8.9999
CUG	chr15:75653280-75653564(-)$1	284	9	12	8.9999
CUG	chr6:52930305-52930564(+)$1	259	7	10	8.9999
CUG	chr15:89007950-89008224(-)$1	274	70	73	8.9999
CUG	chr6:151203912-151204122(+)$1	210	49	52	8.9999
CUG	chr2:86338136-86338381(+)$1	245	22	25	8.9999
CUG	chr17:80012975-80013208(+)$1	233	0	3	8.9999
CUG	chr19:17449827-17450084(+)$1	257	18	21	8.9999
CUG	chr3:37038042-37038301(+)$1	259	36	39	8.9999
CUG	chr16:4747878-4748157(-)$1	279	2	5	8.9999
CUG	chr12:133233621-133233868(-)$1	247	0	3	8.9999
CUG	chr17:17717827-17718136(-)$1	309	3	6	8.9999
CUG	chr15:78585398-78585662(-)$1	264	102	105	8.9999
CUG	chr16:89804162-89804422(+)$1	260	23	26	8.9999
CUG	chr17:77080598-77080856(+)$1	258	31	34	8.9999
CUG	chr19:56174978-56175199(+)$1	221	96	99	8.9999
CUG	chr16:53877961-53878225(+)$1	264	79	82	8.9999
CUG	chr2:202013658-202013876(+)$1	218	133	136	8.9999
CUG	chr12:49500628-49500880(-)$1	252	9	12	8.9999
CUG	chr7:44098427-44098684(+)$1	257	7	10	8.9999
CUG	chr16:711645-711887(+)$1	242	54	57	8.9999
CUG	chr7:148989241-148989506(+)$1	265	64	67	8.9999
CUG	chr3:49135971-49136210(-)$1	239	109	112	8.9999
CUG	chr12:53515057-53515284(+)$1	227	10	13	8.9999
CUG	chr7:139044595-139044877(+)$1	282	23	26	8.9999
CUG	chr9:131776588-131776883(-)$1	295	77	80	8.9999
CUG	chr11:61032326-61032575(-)$1	249	44	47	8.9999
CUG	chr17:4787616-4787868(+)$1	252	3	6	8.9999
CUG	chr3:9487282-9487513(+)$1	231	34	37	8.9999
CUG	chr2:230663508-230663742(-)$1	234	18	21	8.9999
CUG	chr17:79682951-79683176(+)$1	225	1	4	8.9999
CUG	chr22:51017336-51017573(-)$1	237	43	46	8.9999
CUG	chr1:19216405-19216664(-)$1	259	1	4	8.9999
CUG	chr3:47447988-47448204(+)$1	216	31	34	8.9999
CUG	chr16:84216916-84217168(-)$1	252	4	7	8.9999
CUG	chr6:117866540-117866853(+)$1	313	11	14	8.9999
CUG	chr19:50512392-50512716(-)$1	324	22	25	8.9999
CUG	chr14:104166914-104167163(+)$1	249	15	18	8.9999

#otherMatches

#Struct PSSM
EEE	chr19:12057862-12058217(+)$1	355	6	9	8.9999
eee	chr3:49716184-49716401(+)$1	217	8	11	8.9999
mdd	chr19:41250433-41250684(-)$1	251	22	25	8.9999
:::	chr17:40729093-40729351(-)$1	258	2	5	8.9999
c::	chr2:197541745-197542014(+)$1	269	29	32	8.9999
ccc	chr11:3400130-3400456(-)$1	326	2	5	8.9999
ppp	chr22:38004744-38005004(+)$1	260	77	80	8.9999
ffm	chr3:47890682-47890940(+)$1	258	40	43	8.9999
cc[	chr16:66785289-66785601(-)$1	312	93	96	8.9999
ggg	chr9:90264733-90264986(+)$1	253	11	14	8.9999
::c	chr19:35501117-35501405(+)$1	288	57	60	8.9999
c##	chr4:52709229-52709546(+)$1	317	21	24	8.9999
JJJ	chr3:52019137-52019383(+)$1	246	21	24	8.9999
cc[	chr7:100880876-100881139(-)$1	263	34	37	8.9999
cmm	chr14:23945371-23945624(+)$1	253	3	6	8.9999
ccc	chr19:46124640-46124888(-)$1	248	19	22	8.9999
eee	chr16:67862473-67862720(-)$1	247	66	69	8.9999
F{B	chr3:9860468-9860713(+)$1	245	6	9	8.9999
c33	chr3:171830140-171830374(+)$1	234	65	68	8.9999
""g	chr6:43572913-43573154(+)$1	241	89	92	8.9999
eee	chr7:99952665-99952964(+)$1	299	28	31	8.9999
ggg	chr12:57625459-57625717(+)$1	258	5	8	8.9999
C{G	chr17:33325560-33325842(+)$1	282	34	37	8.9999
fff	chr12:56567500-56567734(-)$1	234	59	62	8.9999
EEE	chr17:73143613-73143850(-)$1	237	5	8	8.9999
EEE	chr21:45733421-45733666(+)$1	245	13	16	8.9999
FFF	chr16:47497751-47498023(+)$1	272	13	16	8.9999
:::	chr16:8948860-8949176(+)$1	316	5	8	8.9999
EEE	chr6:41753767-41754003(+)$1	236	16	19	8.9999
DDD	chr17:73663347-73663576(+)$1	229	19	22	8.9999
eee	chr19:54692034-54692303(-)$1	269	63	66	8.9999
FFL	chr1:1250802-1251036(-)$1	234	13	16	8.9999
www	chr11:72726754-72727034(-)$1	280	131	134	8.9999
d[b	chr22:46671044-46671286(+)$1	242	16	19	8.9999
DDD	chr2:74718557-74718798(+)$1	241	56	59	8.9999
ccc	chr19:15491228-15491448(-)$1	220	10	13	8.9999
GGG	chr19:47880302-47880560(+)$1	258	8	11	8.9999
GGG	chr16:28855188-28855406(-)$1	218	7	10	8.9999
mmm	chr4:1952766-1953040(+)$1	274	6	9	8.9999
!!b	chr16:70517763-70517972(-)$1	209	11	14	8.9999
fff	chr16:720385-720657(+)$1	272	183	186	8.9999
bb"	chr16:89858233-89858464(-)$1	231	0	3	8.9999
bb3	chr5:6604281-6604489(-)$1	208	29	32	8.9999
HHH	chr4:2252757-2253013(-)$1	256	10	13	8.9999
e::	chr11:65766911-65767226(-)$1	315	49	52	8.9999
CC{	chr3:49051791-49052032(+)$1	241	1	4	8.9999
EEE	chr15:76196280-76196547(+)$1	267	0	3	8.9999
KKF	chr17:4579946-4580188(-)$1	242	1	4	8.9999
JJJ	chrX:153281892-153282192(-)$1	300	12	15	8.9999
%%d	chr20:57246120-57246430(+)$1	310	41	44	8.9999
GGG	chr3:48561021-48561363(-)$1	342	8	11	8.9999
:ee	chr17:72859237-72859478(-)$1	241	14	17	8.9999
OEE	chr22:40762339-40762627(+)$1	288	26	29	8.9999
:DD	chr17:40266275-40266512(-)$1	237	59	62	8.9999
eeH	chr7:100882973-100883283(-)$1	310	14	17	8.9999
hh[	chr14:74752993-74753237(-)$1	244	20	23	8.9999
ddd	chr17:46048662-46048873(+)$1	211	104	107	8.9999
GGG	chr11:14532319-14532571(-)$1	252	103	106	8.9999
&&b	chr1:45797320-45797605(-)$1	285	93	96	8.9999
[ee	chr15:75653280-75653564(-)$1	284	9	12	8.9999
ooc	chr6:52930305-52930564(+)$1	259	7	10	8.9999
eee	chr15:89007950-89008224(-)$1	274	70	73	8.9999
:dd	chr6:151203912-151204122(+)$1	210	49	52	8.9999
iii	chr2:86338136-86338381(+)$1	245	22	25	8.9999
FFF	chr17:80012975-80013208(+)$1	233	0	3	8.9999
emm	chr19:17449827-17450084(+)$1	257	18	21	8.9999
fff	chr3:37038042-37038301(+)$1	259	36	39	8.9999
b[h	chr16:4747878-4748157(-)$1	279	2	5	8.9999
:::	chr12:133233621-133233868(-)$1	247	0	3	8.9999
ccc	chr17:17717827-17718136(-)$1	309	3	6	8.9999
ddd	chr15:78585398-78585662(-)$1	264	102	105	8.9999
DDD	chr16:89804162-89804422(+)$1	260	23	26	8.9999
CCC	chr17:77080598-77080856(+)$1	258	31	34	8.9999
ddd	chr19:56174978-56175199(+)$1	221	96	99	8.9999
ggg	chr16:53877961-53878225(+)$1	264	79	82	8.9999
fff	chr2:202013658-202013876(+)$1	218	133	136	8.9999
B{B	chr12:49500628-49500880(-)$1	252	9	12	8.9999
FFF	chr7:44098427-44098684(+)$1	257	7	10	8.9999
JJJ	chr16:711645-711887(+)$1	242	54	57	8.9999
bqq	chr7:148989241-148989506(+)$1	265	64	67	8.9999
hhh	chr3:49135971-49136210(-)$1	239	109	112	8.9999
::d	chr12:53515057-53515284(+)$1	227	10	13	8.9999
vvv	chr7:139044595-139044877(+)$1	282	23	26	8.9999
nna	chr9:131776588-131776883(-)$1	295	77	80	8.9999
GCC	chr11:61032326-61032575(-)$1	249	44	47	8.9999
:DD	chr17:4787616-4787868(+)$1	252	3	6	8.9999
bqq	chr3:9487282-9487513(+)$1	231	34	37	8.9999
EEE	chr2:230663508-230663742(-)$1	234	18	21	8.9999
:::	chr17:79682951-79683176(+)$1	225	1	4	8.9999
eee	chr22:51017336-51017573(-)$1	237	43	46	8.9999
DDD	chr1:19216405-19216664(-)$1	259	1	4	8.9999
GGG	chr3:47447988-47448204(+)$1	216	31	34	8.9999
::F	chr16:84216916-84217168(-)$1	252	4	7	8.9999
LLL	chr6:117866540-117866853(+)$1	313	11	14	8.9999
ccm	chr19:50512392-50512716(-)$1	324	22	25	8.9999
FFP	chr14:104166914-104167163(+)$1	249	15	18	8.9999

#DB
(((	chr19:12057862-12058217(+)$1	1	6	9	8.9999
(((	chr3:49716184-49716401(+)$1	1	8	11	8.9999
.))	chr19:41250433-41250684(-)$1	1	22	25	8.9999
...	chr17:40729093-40729351(-)$1	1	2	5	8.9999
)..	chr2:197541745-197542014(+)$1	1	29	32	8.9999
(((	chr11:3400130-3400456(-)$1	1	2	5	8.9999
...	chr22:38004744-38005004(+)$1	1	77	80	8.9999
((.	chr3:47890682-47890940(+)$1	1	40	43	8.9999
((.	chr16:66785289-66785601(-)$1	1	93	96	8.9999
(((	chr9:90264733-90264986(+)$1	1	11	14	8.9999
..(	chr19:35501117-35501405(+)$1	1	57	60	8.9999
(..	chr4:52709229-52709546(+)$1	1	21	24	8.9999
(((	chr3:52019137-52019383(+)$1	1	21	24	8.9999
((.	chr7:100880876-100881139(-)$1	1	34	37	8.9999
(..	chr14:23945371-23945624(+)$1	1	3	6	8.9999
)))	chr19:46124640-46124888(-)$1	1	19	22	8.9999
)))	chr16:67862473-67862720(-)$1	1	66	69	8.9999
(.(	chr3:9860468-9860713(+)$1	1	6	9	8.9999
)..	chr3:171830140-171830374(+)$1	1	65	68	8.9999
..(	chr6:43572913-43573154(+)$1	1	89	92	8.9999
)))	chr7:99952665-99952964(+)$1	1	28	31	8.9999
(((	chr12:57625459-57625717(+)$1	1	5	8	8.9999
(.(	chr17:33325560-33325842(+)$1	1	34	37	8.9999
(((	chr12:56567500-56567734(-)$1	1	59	62	8.9999
(((	chr17:73143613-73143850(-)$1	1	5	8	8.9999
(((	chr21:45733421-45733666(+)$1	1	13	16	8.9999
(((	chr16:47497751-47498023(+)$1	1	13	16	8.9999
...	chr16:8948860-8949176(+)$1	1	5	8	8.9999
(((	chr6:41753767-41754003(+)$1	1	16	19	8.9999
(((	chr17:73663347-73663576(+)$1	1	19	22	8.9999
(((	chr19:54692034-54692303(-)$1	1	63	66	8.9999
((.	chr1:1250802-1251036(-)$1	1	13	16	8.9999
...	chr11:72726754-72727034(-)$1	1	131	134	8.9999
(.(	chr22:46671044-46671286(+)$1	1	16	19	8.9999
(((	chr2:74718557-74718798(+)$1	1	56	59	8.9999
(((	chr19:15491228-15491448(-)$1	1	10	13	8.9999
(((	chr19:47880302-47880560(+)$1	1	8	11	8.9999
(((	chr16:28855188-28855406(-)$1	1	7	10	8.9999
...	chr4:1952766-1953040(+)$1	1	6	9	8.9999
..(	chr16:70517763-70517972(-)$1	1	11	14	8.9999
(((	chr16:720385-720657(+)$1	1	183	186	8.9999
((.	chr16:89858233-89858464(-)$1	1	0	3	8.9999
)).	chr5:6604281-6604489(-)$1	1	29	32	8.9999
(((	chr4:2252757-2253013(-)$1	1	10	13	8.9999
)..	chr11:65766911-65767226(-)$1	1	49	52	8.9999
((.	chr3:49051791-49052032(+)$1	1	1	4	8.9999
(((	chr15:76196280-76196547(+)$1	1	0	3	8.9999
..(	chr17:4579946-4580188(-)$1	1	1	4	8.9999
(((	chrX:153281892-153282192(-)$1	1	12	15	8.9999
..(	chr20:57246120-57246430(+)$1	1	41	44	8.9999
(((	chr3:48561021-48561363(-)$1	1	8	11	8.9999
.((	chr17:72859237-72859478(-)$1	1	14	17	8.9999
.((	chr22:40762339-40762627(+)$1	1	26	29	8.9999
.((	chr17:40266275-40266512(-)$1	1	59	62	8.9999
))(	chr7:100882973-100883283(-)$1	1	14	17	8.9999
((.	chr14:74752993-74753237(-)$1	1	20	23	8.9999
)))	chr17:46048662-46048873(+)$1	1	104	107	8.9999
(((	chr11:14532319-14532571(-)$1	1	103	106	8.9999
..(	chr1:45797320-45797605(-)$1	1	93	96	8.9999
.((	chr15:75653280-75653564(-)$1	1	9	12	8.9999
..)	chr6:52930305-52930564(+)$1	1	7	10	8.9999
)))	chr15:89007950-89008224(-)$1	1	70	73	8.9999
.((	chr6:151203912-151204122(+)$1	1	49	52	8.9999
(((	chr2:86338136-86338381(+)$1	1	22	25	8.9999
(((	chr17:80012975-80013208(+)$1	1	0	3	8.9999
(..	chr19:17449827-17450084(+)$1	1	18	21	8.9999
(((	chr3:37038042-37038301(+)$1	1	36	39	8.9999
(.(	chr16:4747878-4748157(-)$1	1	2	5	8.9999
...	chr12:133233621-133233868(-)$1	1	0	3	8.9999
(((	chr17:17717827-17718136(-)$1	1	3	6	8.9999
(((	chr15:78585398-78585662(-)$1	1	102	105	8.9999
(((	chr16:89804162-89804422(+)$1	1	23	26	8.9999
(((	chr17:77080598-77080856(+)$1	1	31	34	8.9999
)))	chr19:56174978-56175199(+)$1	1	96	99	8.9999
)))	chr16:53877961-53878225(+)$1	1	79	82	8.9999
)))	chr2:202013658-202013876(+)$1	1	133	136	8.9999
(.(	chr12:49500628-49500880(-)$1	1	9	12	8.9999
(((	chr7:44098427-44098684(+)$1	1	7	10	8.9999
(((	chr16:711645-711887(+)$1	1	54	57	8.9999
(..	chr7:148989241-148989506(+)$1	1	64	67	8.9999
)))	chr3:49135971-49136210(-)$1	1	109	112	8.9999
..(	chr12:53515057-53515284(+)$1	1	10	13	8.9999
...	chr7:139044595-139044877(+)$1	1	23	26	8.9999
..)	chr9:131776588-131776883(-)$1	1	77	80	8.9999
(((	chr11:61032326-61032575(-)$1	1	44	47	8.9999
.((	chr17:4787616-4787868(+)$1	1	3	6	8.9999
(..	chr3:9487282-9487513(+)$1	1	34	37	8.9999
(((	chr2:230663508-230663742(-)$1	1	18	21	8.9999
...	chr17:79682951-79683176(+)$1	1	1	4	8.9999
(((	chr22:51017336-51017573(-)$1	1	43	46	8.9999
(((	chr1:19216405-19216664(-)$1	1	1	4	8.9999
(((	chr3:47447988-47448204(+)$1	1	31	34	8.9999
..(	chr16:84216916-84217168(-)$1	1	4	7	8.9999
...	chr6:117866540-117866853(+)$1	1	11	14	8.9999
((.	chr19:50512392-50512716(-)$1	1	22	25	8.9999
((.	chr14:104166914-104167163(+)$1	1	15	18	8.9999

#PSSM
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_UTR_m2_run2.nuc.txt

#NT
GGAGAAGA	chr16:242816-243121(-)$1	305	127	135	16.4603
gaagaaga	chr9:139734693-139734931(+)$1	238	80	88	20.8253
GAAGAAGA	chr17:76183350-76183616(+)$1	266	145	153	20.8253
gaugaaga	chr14:102549316-102549614(-)$1	298	148	156	16.7777
GAAGAACA	chr3:196666148-196666427(-)$1	279	133	141	16.3015
GAUGAAGA	chr14:35548107-35548331(+)$1	224	110	118	16.7777
GAAGAAGA	chr12:76453484-76453738(-)$1	254	116	124	20.8253
GAAGAAGA	chr17:74731023-74731348(-)$1	325	166	174	20.8253
GAAGAUGA	chr2:172582023-172582307(+)$1	284	112	120	16.4603
gaggaaga	chr17:3721612-3721951(-)$1	339	120	128	16.5396
GAAGAAGA	chr3:50099370-50099642(+)$1	272	63	71	20.8253
GAAGAAGA	chr17:40134160-40134500(-)$1	340	118	126	20.8253
GAAGAAGA	chr3:121412545-121412851(-)$1	306	163	171	20.8253
GAAAAAGA	chr20:34319828-34320086(-)$1	258	116	124	16.3015
gaagaaga	chr2:232576503-232576755(+)$1	252	174	182	20.8253
GAUGAAGA	chr14:24606627-24606873(+)$1	246	134	142	16.7777
GGAGAAGA	chr11:2972385-2972645(-)$1	260	121	129	16.4603
GAAGAAGA	chr16:4881921-4882240(-)$1	319	131	139	20.8253
gaagacga	chr15:69075193-69075486(-)$1	293	126	134	16.3015
gaagaaga	chr14:102551183-102551432(-)$1	249	229	237	20.8253
GAAGGAGA	chr1:154145313-154145555(-)$1	242	125	133	16.2222
GAAGAAGC	chr12:104325954-104326185(+)$1	231	104	112	16.1428
Aaagaaga	chr4:174253109-174253474(-)$1	365	156	164	17.0158
CAAGAAGA	chr2:159519401-159519696(+)$1	295	187	195	16.7777
GGAGAAGA	chr9:127998538-127998798(-)$1	260	117	125	16.4603
GAAGAGGA	chr12:6879273-6879484(+)$1	211	102	110	16.3015
CAAGAAGA	chr8:97506052-97506386(+)$1	334	151	159	16.7777
gaagaaga	chr3:169700491-169700800(+)$1	309	109	117	20.8253
gaagaaga	chr1:16891204-16891509(-)$1	305	132	140	20.8253
GAAGAAGA	chr14:91928372-91928665(-)$1	293	140	148	20.8253
AAAGAAGA	chr21:40717000-40717266(-)$1	266	150	158	17.0158
GAAAAAGA	chr20:34319792-34320028(-)$1	236	58	66	16.3015
GAAGAUGA	chr2:75928213-75928538(-)$1	325	160	168	16.4603
GAAGAAGG	chr5:891228-891503(-)$1	275	172	180	16.2222
GAAGAAAA	chr8:61693573-61693920(+)$1	347	234	242	16.5396
gaugaaga	chr17:4575430-4575670(-)$1	240	130	138	16.7777
GAAAAAGA	chr20:34319938-34320160(-)$1	222	190	198	16.3015
AAAGAAGA	chr2:187368707-187369062(+)$1	355	192	200	17.0158
AAAGAAGA	chr17:62523162-62523502(+)$1	340	114	122	17.0158
GAAGAAGA	chr8:74204910-74205133(-)$1	223	104	112	20.8253
gaagaaga	chr2:232576582-232576794(+)$1	212	95	103	20.8253
GAAGAAAA	chr7:106840509-106840840(+)$1	331	125	133	16.5396
GAAGAAGA	chr2:48025630-48025932(+)$1	302	149	157	20.8253
GAAGAUGA	chr3:185649243-185649584(-)$1	341	119	127	16.4603
AAAGAAGA	chr17:48822985-48823268(+)$1	283	264	272	17.0158
GAAGAAGA	chr5:179153580-179153802(+)$1	222	123	131	20.8253
gaagaaga	chr2:232576555-232576782(+)$1	227	122	130	20.8253
GAAGAAGA	chr12:69230353-69230635(+)$1	282	149	157	20.8253
gaaggaga	chr5:179151586-179151875(+)$1	289	179	187	16.2222
gaagaaga	chr19:14199922-14200265(-)$1	343	127	135	20.8253
GAAGCAGA	chr3:42674109-42674418(+)$1	309	91	99	16.1428
GAAGAAGA	chr6:30545498-30545788(+)$1	290	135	143	20.8253
GAAGAAGA	chr10:70525533-70525875(+)$1	342	111	119	20.8253
GAAGAAGA	chr14:73563521-73563793(+)$1	272	259	267	20.8253
GAUGAAGA	chr5:54645288-54645581(+)$1	293	111	119	16.7777
GCAGAAGA	chr5:154172211-154172459(+)$1	248	131	139	16.3809
GAAGAAAA	chr16:11933538-11933806(-)$1	268	140	148	16.5396
GCAGAAGA	chr3:50102397-50102660(+)$1	263	99	107	16.3809
GAAGAAAA	chr19:5600026-5600360(-)$1	334	156	164	16.5396
CAAGAAGA	chr16:8998193-8998466(-)$1	273	103	111	16.7777
GAGGAAGA	chr13:107211824-107212102(-)$1	278	176	184	16.5396
AAAGAAGA	chr2:20550314-20550590(-)$1	276	118	126	17.0158

#otherMatches

#Struct PSSM
e$$$$$bb	chr17:47021940-47022218(-)$1	278	184	192	16.2222
a]bbccc]	chr16:242816-243121(-)$1	305	127	135	16.4603
++++++++	chr9:139734693-139734931(+)$1	238	80	88	20.8253
=&&&&&&&	chr17:76183350-76183616(+)$1	266	145	153	20.8253
::::::::	chr14:102549316-102549614(-)$1	298	148	156	16.7777
^^^^^^^^	chr3:196666148-196666427(-)$1	279	133	141	16.3015
eeee====	chr14:35548107-35548331(+)$1	224	110	118	16.7777
ggggggg2	chr12:76453484-76453738(-)$1	254	116	124	20.8253
999999hh	chr17:74731023-74731348(-)$1	325	166	174	20.8253
++++++++	chr2:172582023-172582307(+)$1	284	112	120	16.4603
ggggggg7	chr17:3721612-3721951(-)$1	339	120	128	16.5396
bbb22bb]	chr3:50099370-50099642(+)$1	272	63	71	20.8253
pppppppc	chr17:40134160-40134500(-)$1	340	118	126	20.8253
ddd[a"""	chr3:121412545-121412851(-)$1	306	163	171	20.8253
ee$$$$$c	chr20:34319828-34320086(-)$1	258	116	124	16.3015
ffccc!!e	chr2:232576503-232576755(+)$1	252	174	182	20.8253
::::::cc	chr14:24606627-24606873(+)$1	246	134	142	16.7777
}DDDDZZZ	chr11:2972385-2972645(-)$1	260	121	129	16.4603
::GGGGGG	chr16:4881921-4882240(-)$1	319	131	139	20.8253
D::ccc[c	chr15:69075193-69075486(-)$1	293	126	134	16.3015
::::::::	chr14:102551183-102551432(-)$1	249	229	237	20.8253
cc!!dddd	chr1:154145313-154145555(-)$1	242	125	133	16.2222
gggg7777	chr12:104325954-104326185(+)$1	231	104	112	16.1428
::::::::	chr4:174253109-174253474(-)$1	365	156	164	17.0158
%%%%eeee	chr2:159519401-159519696(+)$1	295	187	195	16.7777
:::dddd!	chr9:127998538-127998798(-)$1	260	117	125	16.4603
::::IIII	chr12:6879273-6879484(+)$1	211	102	110	16.3015
b:::::::	chr8:97506052-97506386(+)$1	334	151	159	16.7777
^^^^^^^^	chr3:169700491-169700800(+)$1	309	109	117	20.8253
EEEEEGGG	chr1:16891204-16891509(-)$1	305	132	140	20.8253
ddddeeee	chr14:91928372-91928665(-)$1	293	140	148	20.8253
::::::ee	chr21:40717000-40717266(-)$1	266	150	158	17.0158
ee$$$$$c	chr20:34319792-34320028(-)$1	236	58	66	16.3015
oooooccc	chr2:75928213-75928538(-)$1	325	160	168	16.4603
e$$$$$ee	chr5:891228-891503(-)$1	275	172	180	16.2222
::::::::	chr8:61693573-61693920(+)$1	347	234	242	16.5396
::a[dddd	chr17:4575430-4575670(-)$1	240	130	138	16.7777
::::::::	chr20:34319938-34320160(-)$1	222	190	198	16.3015
::::::::	chr2:187368707-187369062(+)$1	355	192	200	17.0158
22ccc:::	chr17:62523162-62523502(+)$1	340	114	122	17.0158
::::::::	chr8:74204910-74205133(-)$1	223	104	112	20.8253
ffccc!!e	chr2:232576582-232576794(+)$1	212	95	103	20.8253
d:::::::	chr7:106840509-106840840(+)$1	331	125	133	16.5396
eeeee22b	chr2:48025630-48025932(+)$1	302	149	157	20.8253
h4444bb:	chr3:185649243-185649584(-)$1	341	119	127	16.4603
33bb::::	chr17:48822985-48823268(+)$1	283	264	272	17.0158
88888888	chr5:179153580-179153802(+)$1	222	123	131	20.8253
ffccc!!e	chr2:232576555-232576782(+)$1	227	122	130	20.8253
88888888	chr12:69230353-69230635(+)$1	282	149	157	20.8253
"bb[bb[a	chr5:179151586-179151875(+)$1	289	179	187	16.2222
EEEEEEEC	chr19:14199922-14200265(-)$1	343	127	135	20.8253
eeee4444	chr3:42674109-42674418(+)$1	309	91	99	16.1428
66666fff	chr6:30545498-30545788(+)$1	290	135	143	20.8253
f333ccc]	chr10:70525533-70525875(+)$1	342	111	119	20.8253
DYYIIIII	chr14:73563521-73563793(+)$1	272	259	267	20.8253
nnna]fff	chr5:54645288-54645581(+)$1	293	111	119	16.7777
ddd+++++	chr5:154172211-154172459(+)$1	248	131	139	16.3809
d:::::::	chr16:11933538-11933806(-)$1	268	140	148	16.5396
dddd!!a[	chr3:50102397-50102660(+)$1	263	99	107	16.3809
::::::::	chr19:5600026-5600360(-)$1	334	156	164	16.5396
xxxxxxxx	chr16:8998193-8998466(-)$1	273	103	111	16.7777
======>>	chr13:107211824-107212102(-)$1	278	176	184	16.5396
qqqqqqqq	chr2:20550314-20550590(-)$1	276	118	126	17.0158

#DB
(.....((	chr17:47021940-47022218(-)$1	1	184	192	16.2222
).))))).	chr16:242816-243121(-)$1	1	127	135	16.4603
........	chr9:139734693-139734931(+)$1	1	80	88	20.8253
(.......	chr17:76183350-76183616(+)$1	1	145	153	20.8253
........	chr14:102549316-102549614(-)$1	1	148	156	16.7777
........	chr3:196666148-196666427(-)$1	1	133	141	16.3015
((((((((	chr14:35548107-35548331(+)$1	1	110	118	16.7777
))))))).	chr12:76453484-76453738(-)$1	1	116	124	20.8253
......))	chr17:74731023-74731348(-)$1	1	166	174	20.8253
........	chr2:172582023-172582307(+)$1	1	112	120	16.4603
))))))).	chr17:3721612-3721951(-)$1	1	120	128	16.5396
)))..)).	chr3:50099370-50099642(+)$1	1	63	71	20.8253
.......)	chr17:40134160-40134500(-)$1	1	118	126	20.8253
(((.(...	chr3:121412545-121412851(-)$1	1	163	171	20.8253
((.....(	chr20:34319828-34320086(-)$1	1	116	124	16.3015
(((((..(	chr2:232576503-232576755(+)$1	1	174	182	20.8253
......((	chr14:24606627-24606873(+)$1	1	134	142	16.7777
.))))...	chr11:2972385-2972645(-)$1	1	121	129	16.4603
..))))))	chr16:4881921-4882240(-)$1	1	131	139	20.8253
)..(((.(	chr15:69075193-69075486(-)$1	1	126	134	16.3015
........	chr14:102551183-102551432(-)$1	1	229	237	20.8253
((..((((	chr1:154145313-154145555(-)$1	1	125	133	16.2222
))))....	chr12:104325954-104326185(+)$1	1	104	112	16.1428
........	chr4:174253109-174253474(-)$1	1	156	164	17.0158
....((((	chr2:159519401-159519696(+)$1	1	187	195	16.7777
...((((.	chr9:127998538-127998798(-)$1	1	117	125	16.4603
....))))	chr12:6879273-6879484(+)$1	1	102	110	16.3015
).......	chr8:97506052-97506386(+)$1	1	151	159	16.7777
........	chr3:169700491-169700800(+)$1	1	109	117	20.8253
((((((((	chr1:16891204-16891509(-)$1	1	132	140	20.8253
))))))))	chr14:91928372-91928665(-)$1	1	140	148	20.8253
......((	chr21:40717000-40717266(-)$1	1	150	158	17.0158
((.....(	chr20:34319792-34320028(-)$1	1	58	66	16.3015
.....)))	chr2:75928213-75928538(-)$1	1	160	168	16.4603
(.....((	chr5:891228-891503(-)$1	1	172	180	16.2222
........	chr8:61693573-61693920(+)$1	1	234	242	16.5396
..(.((((	chr17:4575430-4575670(-)$1	1	130	138	16.7777
........	chr20:34319938-34320160(-)$1	1	190	198	16.3015
........	chr2:187368707-187369062(+)$1	1	192	200	17.0158
..)))...	chr17:62523162-62523502(+)$1	1	114	122	17.0158
........	chr8:74204910-74205133(-)$1	1	104	112	20.8253
(((((..(	chr2:232576582-232576794(+)$1	1	95	103	20.8253
).......	chr7:106840509-106840840(+)$1	1	125	133	16.5396
)))))..)	chr2:48025630-48025932(+)$1	1	149	157	20.8253
)....)).	chr3:185649243-185649584(-)$1	1	119	127	16.4603
..))....	chr17:48822985-48823268(+)$1	1	264	272	17.0158
........	chr5:179153580-179153802(+)$1	1	123	131	20.8253
(((((..(	chr2:232576555-232576782(+)$1	1	122	130	20.8253
........	chr12:69230353-69230635(+)$1	1	149	157	20.8253
.((.((.(	chr5:179151586-179151875(+)$1	1	179	187	16.2222
))))))))	chr19:14199922-14200265(-)$1	1	127	135	20.8253
))))....	chr3:42674109-42674418(+)$1	1	91	99	16.1428
.....)))	chr6:30545498-30545788(+)$1	1	135	143	20.8253
)...))).	chr10:70525533-70525875(+)$1	1	111	119	20.8253
)..)))))	chr14:73563521-73563793(+)$1	1	259	267	20.8253
...).)))	chr5:54645288-54645581(+)$1	1	111	119	16.7777
(((.....	chr5:154172211-154172459(+)$1	1	131	139	16.3809
).......	chr16:11933538-11933806(-)$1	1	140	148	16.5396
((((..(.	chr3:50102397-50102660(+)$1	1	99	107	16.3809
........	chr19:5600026-5600360(-)$1	1	156	164	16.5396
........	chr16:8998193-8998466(-)$1	1	103	111	16.7777
))))))..	chr13:107211824-107212102(-)$1	1	176	184	16.5396
........	chr2:20550314-20550590(-)$1	1	118	126	17.0158

#PSSM
G : 0.65	g : 0.20	A : 0.09	C : 0.04	
A : 0.69	a : 0.22	G : 0.04	C : 0.03	
A : 0.71	a : 0.17	U : 0.04	u : 0.03	g : 0.01	G : 0.01	
G : 0.73	g : 0.22	A : 0.04	
A : 0.74	a : 0.20	G : 0.01	g : 0.01	C : 0.01	
A : 0.71	a : 0.20	U : 0.04	c : 0.01	G : 0.01	
G : 0.69	g : 0.22	A : 0.06	C : 0.01	
A : 0.73	a : 0.22	G : 0.03	C : 0.01	

#score	1141.0476190476186
#seq	63
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_CDS_m1_run2.nuc.txt

#NT
CAGG	chr18:47806213-47806488(-)$1	275	98	102	11.9999
cagg	chr6:167352327-167352597(-)$1	270	33	37	11.9999
CAGG	chr17:79975084-79975294(+)$1	210	9	13	11.9999
CAGG	chr17:39974631-39974847(+)$1	216	66	70	11.9999
CAGG	chr2:206911173-206911439(-)$1	266	100	104	11.9999
CAGG	chr3:183884144-183884411(+)$1	267	86	90	11.9999
CAGG	chr17:42160827-42161085(-)$1	258	1	5	11.9999
CAGG	chr9:130942594-130942874(-)$1	280	242	246	11.9999
cagg	chr22:40796670-40796915(+)$1	245	26	30	11.9999
CAGG	chr17:79564170-79564430(-)$1	260	172	176	11.9999
CAGG	chr14:31605636-31605937(-)$1	301	128	132	11.9999
CAGG	chr6:33179567-33179829(+)$1	262	23	27	11.9999
CAGG	chr22:22326968-22327189(-)$1	221	203	207	11.9999
CAGG	chr16:68266378-68266630(-)$1	252	110	114	11.9999
CAGG	chr16:48368121-48368374(+)$1	253	210	214	11.9999
CAGG	chr7:107600036-107600267(-)$1	231	5	9	11.9999
CAGG	chr9:6602008-6602230(-)$1	222	67	71	11.9999
CAGG	chr19:10220940-10221197(+)$1	257	95	99	11.9999
CAGG	chr9:117015075-117015309(+)$1	234	80	84	11.9999
CAGG	chr1:32796141-32796373(+)$1	232	19	23	11.9999
CAGG	chr19:42407395-42407657(+)$1	262	18	22	11.9999
CAGG	chr17:79812992-79813223(-)$1	231	2	6	11.9999
CAGG	chr4:1801425-1801638(+)$1	213	10	14	11.9999
CAGG	chr19:46332143-46332391(-)$1	248	51	55	11.9999
CAGG	chr4:57876526-57876771(+)$1	245	166	170	11.9999
CAGG	chr12:48371978-48372202(-)$1	224	18	22	11.9999
CAGG	chr3:47049805-47050028(+)$1	223	123	127	11.9999
CAGG	chr15:41819520-41819753(-)$1	233	13	17	11.9999
CAGG	chr9:140110122-140110345(+)$1	223	107	111	11.9999
CAGG	chr16:720219-720458(+)$1	239	26	30	11.9999
CAGG	chr20:62321002-62321214(+)$1	212	10	14	11.9999
CAGG	chr4:517437-517704(+)$1	267	62	66	11.9999
CAGG	chr3:50386723-50387009(-)$1	286	14	18	11.9999
CAGG	chr9:140344571-140344788(-)$1	217	78	82	11.9999
CAGG	chr17:64641481-64641745(+)$1	264	145	149	11.9999
CAGG	chr12:124862678-124862976(-)$1	298	7	11	11.9999
CAGG	chr19:42839098-42839381(+)$1	283	157	161	11.9999
CAGG	chr20:60738416-60738664(+)$1	248	22	26	11.9999
CAGG	chr11:66372937-66373163(+)$1	226	107	111	11.9999
CAGG	chr1:979193-979452(+)$1	259	54	58	11.9999
CAGG	chr11:71195325-71195592(+)$1	267	137	141	11.9999
CAGG	chr16:70291911-70292148(-)$1	237	25	29	11.9999
CAGG	chr10:101589991-101590260(+)$1	269	25	29	11.9999
CAGG	chr16:89383239-89383500(-)$1	261	66	70	11.9999
CAGG	chr16:89971245-89971479(+)$1	234	49	53	11.9999
CAGG	chr17:45915794-45916024(-)$1	230	72	76	11.9999
CAGG	chr19:19466467-19466735(+)$1	268	150	154	11.9999
CAGG	chr17:1650509-1650740(+)$1	231	90	94	11.9999
CAGG	chr13:20580571-20580827(+)$1	256	152	156	11.9999
CAGG	chr12:133252583-133252848(-)$1	265	75	79	11.9999
CAGG	chr2:240029641-240029921(-)$1	280	39	43	11.9999
CAGG	chr17:78327323-78327569(+)$1	246	51	55	11.9999
CAGG	chr12:51398465-51398718(-)$1	253	6	10	11.9999
CAGG	chr22:22326148-22326377(-)$1	229	23	27	11.9999
CAGG	chr2:112761399-112761661(+)$1	262	32	36	11.9999
CAGG	chr12:48386602-48386814(-)$1	212	30	34	11.9999
CAGG	chr6:41751821-41752077(+)$1	256	44	48	11.9999
CAGG	chr2:219292591-219292819(+)$1	228	23	27	11.9999
CAGG	chr8:19690685-19690933(+)$1	248	42	46	11.9999
CAGG	chr16:84092880-84093131(-)$1	251	95	99	11.9999
CAGG	chr17:73654350-73654608(-)$1	258	65	69	11.9999
CAGG	chr21:47414018-47414244(+)$1	226	59	63	11.9999
CAGG	chr2:96949995-96950287(-)$1	292	25	29	11.9999
CAGG	chr20:34095551-34095779(+)$1	228	67	71	11.9999
CAGG	chr16:67914946-67915179(+)$1	233	35	39	11.9999
CAGG	chr20:24950059-24950320(-)$1	261	48	52	11.9999
CAGG	chr17:79207395-79207616(-)$1	221	40	44	11.9999
CAGG	chr7:150035370-150035600(-)$1	230	88	92	11.9999
CAGG	chr11:65359178-65359443(+)$1	265	1	5	11.9999
CAGG	chr12:56716773-56717038(-)$1	265	190	194	11.9999
CAGG	chr16:84216628-84216855(-)$1	227	24	28	11.9999
CAgg	chr10:5925831-5926087(-)$1	256	211	215	11.9999
CAGG	chr12:7076912-7077163(-)$1	251	148	152	11.9999
CAGG	chr8:145534766-145535003(+)$1	237	15	19	11.9999
CAGG	chr9:136555506-136555737(-)$1	231	44	48	11.9999
CAGG	chr16:602516-602754(+)$1	238	10	14	11.9999
CAGG	chr9:15422811-15423065(+)$1	254	34	38	11.9999
CAGG	chr7:2400300-2400556(+)$1	256	76	80	11.9999
CAGG	chr22:38019514-38019741(+)$1	227	41	45	11.9999
CAGG	chr1:44441665-44441946(+)$1	281	93	97	11.9999
CAGG	chr14:105360950-105361194(+)$1	244	14	18	11.9999
CAGG	chr22:38153930-38154214(+)$1	284	92	96	11.9999
cagg	chr7:100478805-100479082(+)$1	277	44	48	11.9999
CAGG	chr6:31726441-31726716(+)$1	275	16	20	11.9999
CAGG	chr13:113835343-113835618(-)$1	275	13	17	11.9999
CAGG	chr6:160183955-160184187(+)$1	232	30	34	11.9999
CAGG	chr17:42169722-42169947(-)$1	225	181	185	11.9999
CAGG	chr15:99478444-99478689(+)$1	245	6	10	11.9999
CAGG	chr22:36712465-36712673(-)$1	208	58	62	11.9999
CAGG	chr17:79862849-79863102(-)$1	253	2	6	11.9999
CAGG	chr14:76642861-76643150(+)$1	289	257	261	11.9999
CAGG	chr5:176981291-176981594(-)$1	303	1	5	11.9999

#otherMatches

#Struct PSSM
cnnn	chr6:79787470-79787725(-)$1	255	142	146	11.9999
D{DD	chr18:47806213-47806488(-)$1	275	98	102	11.9999
55cc	chr6:167352327-167352597(-)$1	270	33	37	11.9999
cccc	chr17:79975084-79975294(+)$1	210	9	13	11.9999
hhhh	chr17:39974631-39974847(+)$1	216	66	70	11.9999
dddp	chr2:206911173-206911439(-)$1	266	100	104	11.9999
eeee	chr3:183884144-183884411(+)$1	267	86	90	11.9999
EEEE	chr17:42160827-42161085(-)$1	258	1	5	11.9999
iiii	chr9:130942594-130942874(-)$1	280	242	246	11.9999
LEEE	chr22:40796670-40796915(+)$1	245	26	30	11.9999
ECCC	chr17:79564170-79564430(-)$1	260	172	176	11.9999
ccc:	chr14:31605636-31605937(-)$1	301	128	132	11.9999
ffff	chr6:33179567-33179829(+)$1	262	23	27	11.9999
7777	chr22:22326968-22327189(-)$1	221	203	207	11.9999
cc[a	chr16:68266378-68266630(-)$1	252	110	114	11.9999
mmmd	chr16:48368121-48368374(+)$1	253	210	214	11.9999
EEEE	chr7:107600036-107600267(-)$1	231	5	9	11.9999
ddd]	chr9:6602008-6602230(-)$1	222	67	71	11.9999
333e	chr19:10220940-10221197(+)$1	257	95	99	11.9999
dddd	chr9:117015075-117015309(+)$1	234	80	84	11.9999
ffff	chr1:32796141-32796373(+)$1	232	19	23	11.9999
ddee	chr19:42407395-42407657(+)$1	262	18	22	11.9999
EEEE	chr17:79812992-79813223(-)$1	231	2	6	11.9999
GGGG	chr4:1801425-1801638(+)$1	213	10	14	11.9999
eeee	chr19:46332143-46332391(-)$1	248	51	55	11.9999
d:DD	chr4:57876526-57876771(+)$1	245	166	170	11.9999
VGGG	chr12:48371978-48372202(-)$1	224	18	22	11.9999
::cc	chr3:47049805-47050028(+)$1	223	123	127	11.9999
DDCC	chr15:41819520-41819753(-)$1	233	13	17	11.9999
ddd2	chr9:140110122-140110345(+)$1	223	107	111	11.9999
EEEE	chr16:720219-720458(+)$1	239	26	30	11.9999
eeee	chr20:62321002-62321214(+)$1	212	10	14	11.9999
eccc	chr4:517437-517704(+)$1	267	62	66	11.9999
====	chr3:50386723-50387009(-)$1	286	14	18	11.9999
I{CC	chr9:140344571-140344788(-)$1	217	78	82	11.9999
++++	chr17:64641481-64641745(+)$1	264	145	149	11.9999
DA{C	chr12:124862678-124862976(-)$1	298	7	11	11.9999
cc]c	chr19:42839098-42839381(+)$1	283	157	161	11.9999
ssss	chr20:60738416-60738664(+)$1	248	22	26	11.9999
:::b	chr11:66372937-66373163(+)$1	226	107	111	11.9999
c[cc	chr1:979193-979452(+)$1	259	54	58	11.9999
}EEE	chr11:71195325-71195592(+)$1	267	137	141	11.9999
ffff	chr16:70291911-70292148(-)$1	237	25	29	11.9999
"eee	chr10:101589991-101590260(+)$1	269	25	29	11.9999
HHHH	chr16:89383239-89383500(-)$1	261	66	70	11.9999
gggg	chr16:89971245-89971479(+)$1	234	49	53	11.9999
ffff	chr17:45915794-45916024(-)$1	230	72	76	11.9999
hhhh	chr19:19466467-19466735(+)$1	268	150	154	11.9999
eeee	chr17:1650509-1650740(+)$1	231	90	94	11.9999
CC}I	chr13:20580571-20580827(+)$1	256	152	156	11.9999
&&cc	chr12:133252583-133252848(-)$1	265	75	79	11.9999
EEEE	chr2:240029641-240029921(-)$1	280	39	43	11.9999
{III	chr17:78327323-78327569(+)$1	246	51	55	11.9999
bfff	chr12:51398465-51398718(-)$1	253	6	10	11.9999
rrrr	chr22:22326148-22326377(-)$1	229	23	27	11.9999
ffff	chr2:112761399-112761661(+)$1	262	32	36	11.9999
EEEE	chr12:48386602-48386814(-)$1	212	30	34	11.9999
::bb	chr6:41751821-41752077(+)$1	256	44	48	11.9999
cc]a	chr2:219292591-219292819(+)$1	228	23	27	11.9999
hhhh	chr8:19690685-19690933(+)$1	248	42	46	11.9999
FFFF	chr16:84092880-84093131(-)$1	251	95	99	11.9999
##cc	chr17:73654350-73654608(-)$1	258	65	69	11.9999
mmmb	chr21:47414018-47414244(+)$1	226	59	63	11.9999
mmbb	chr2:96949995-96950287(-)$1	292	25	29	11.9999
:::d	chr20:34095551-34095779(+)$1	228	67	71	11.9999
OOBB	chr16:67914946-67915179(+)$1	233	35	39	11.9999
gggg	chr20:24950059-24950320(-)$1	261	48	52	11.9999
ffff	chr17:79207395-79207616(-)$1	221	40	44	11.9999
mmbb	chr7:150035370-150035600(-)$1	230	88	92	11.9999
:hhh	chr11:65359178-65359443(+)$1	265	1	5	11.9999
::dd	chr12:56716773-56717038(-)$1	265	190	194	11.9999
bb]d	chr16:84216628-84216855(-)$1	227	24	28	11.9999
::CC	chr10:5925831-5926087(-)$1	256	211	215	11.9999
bbdd	chr12:7076912-7077163(-)$1	251	148	152	11.9999
:::F	chr8:145534766-145535003(+)$1	237	15	19	11.9999
&ddd	chr9:136555506-136555737(-)$1	231	44	48	11.9999
eeee	chr16:602516-602754(+)$1	238	10	14	11.9999
gggm	chr9:15422811-15423065(+)$1	254	34	38	11.9999
hhhh	chr7:2400300-2400556(+)$1	256	76	80	11.9999
d[a!	chr22:38019514-38019741(+)$1	227	41	45	11.9999
:bb!	chr1:44441665-44441946(+)$1	281	93	97	11.9999
JJJJ	chr14:105360950-105361194(+)$1	244	14	18	11.9999
eeee	chr22:38153930-38154214(+)$1	284	92	96	11.9999
[ddd	chr7:100478805-100479082(+)$1	277	44	48	11.9999
i!!d	chr6:31726441-31726716(+)$1	275	16	20	11.9999
[ccc	chr13:113835343-113835618(-)$1	275	13	17	11.9999
fffl	chr6:160183955-160184187(+)$1	232	30	34	11.9999
hhhh	chr17:42169722-42169947(-)$1	225	181	185	11.9999
C:DD	chr15:99478444-99478689(+)$1	245	6	10	11.9999
JJJJ	chr22:36712465-36712673(-)$1	208	58	62	11.9999
DD{B	chr17:79862849-79863102(-)$1	253	2	6	11.9999
EEEE	chr14:76642861-76643150(+)$1	289	257	261	11.9999
BLLL	chr5:176981291-176981594(-)$1	303	1	5	11.9999

#DB
(...	chr6:79787470-79787725(-)$1	1	142	146	11.9999
(.((	chr18:47806213-47806488(-)$1	1	98	102	11.9999
..))	chr6:167352327-167352597(-)$1	1	33	37	11.9999
((((	chr17:79975084-79975294(+)$1	1	9	13	11.9999
))))	chr17:39974631-39974847(+)$1	1	66	70	11.9999
(((.	chr2:206911173-206911439(-)$1	1	100	104	11.9999
))))	chr3:183884144-183884411(+)$1	1	86	90	11.9999
((((	chr17:42160827-42161085(-)$1	1	1	5	11.9999
))))	chr9:130942594-130942874(-)$1	1	242	246	11.9999
.(((	chr22:40796670-40796915(+)$1	1	26	30	11.9999
))))	chr17:79564170-79564430(-)$1	1	172	176	11.9999
))).	chr14:31605636-31605937(-)$1	1	128	132	11.9999
((((	chr6:33179567-33179829(+)$1	1	23	27	11.9999
....	chr22:22326968-22327189(-)$1	1	203	207	11.9999
((.(	chr16:68266378-68266630(-)$1	1	110	114	11.9999
...)	chr16:48368121-48368374(+)$1	1	210	214	11.9999
((((	chr7:107600036-107600267(-)$1	1	5	9	11.9999
))).	chr9:6602008-6602230(-)$1	1	67	71	11.9999
...)	chr19:10220940-10221197(+)$1	1	95	99	11.9999
((((	chr9:117015075-117015309(+)$1	1	80	84	11.9999
((((	chr1:32796141-32796373(+)$1	1	19	23	11.9999
))))	chr19:42407395-42407657(+)$1	1	18	22	11.9999
((((	chr17:79812992-79813223(-)$1	1	2	6	11.9999
((((	chr4:1801425-1801638(+)$1	1	10	14	11.9999
))))	chr19:46332143-46332391(-)$1	1	51	55	11.9999
).))	chr4:57876526-57876771(+)$1	1	166	170	11.9999
.(((	chr12:48371978-48372202(-)$1	1	18	22	11.9999
..((	chr3:47049805-47050028(+)$1	1	123	127	11.9999
((((	chr15:41819520-41819753(-)$1	1	13	17	11.9999
))).	chr9:140110122-140110345(+)$1	1	107	111	11.9999
((((	chr16:720219-720458(+)$1	1	26	30	11.9999
((((	chr20:62321002-62321214(+)$1	1	10	14	11.9999
)(((	chr4:517437-517704(+)$1	1	62	66	11.9999
((((	chr3:50386723-50387009(-)$1	1	14	18	11.9999
(.((	chr9:140344571-140344788(-)$1	1	78	82	11.9999
....	chr17:64641481-64641745(+)$1	1	145	149	11.9999
((.(	chr12:124862678-124862976(-)$1	1	7	11	11.9999
)).)	chr19:42839098-42839381(+)$1	1	157	161	11.9999
....	chr20:60738416-60738664(+)$1	1	22	26	11.9999
...(	chr11:66372937-66373163(+)$1	1	107	111	11.9999
(.((	chr1:979193-979452(+)$1	1	54	58	11.9999
.)))	chr11:71195325-71195592(+)$1	1	137	141	11.9999
))))	chr16:70291911-70292148(-)$1	1	25	29	11.9999
.(((	chr10:101589991-101590260(+)$1	1	25	29	11.9999
((((	chr16:89383239-89383500(-)$1	1	66	70	11.9999
))))	chr16:89971245-89971479(+)$1	1	49	53	11.9999
))))	chr17:45915794-45916024(-)$1	1	72	76	11.9999
))))	chr19:19466467-19466735(+)$1	1	150	154	11.9999
((((	chr17:1650509-1650740(+)$1	1	90	94	11.9999
)).)	chr13:20580571-20580827(+)$1	1	152	156	11.9999
..((	chr12:133252583-133252848(-)$1	1	75	79	11.9999
((((	chr2:240029641-240029921(-)$1	1	39	43	11.9999
.(((	chr17:78327323-78327569(+)$1	1	51	55	11.9999
((((	chr12:51398465-51398718(-)$1	1	6	10	11.9999
....	chr22:22326148-22326377(-)$1	1	23	27	11.9999
))))	chr2:112761399-112761661(+)$1	1	32	36	11.9999
((((	chr12:48386602-48386814(-)$1	1	30	34	11.9999
..((	chr6:41751821-41752077(+)$1	1	44	48	11.9999
)).)	chr2:219292591-219292819(+)$1	1	23	27	11.9999
((((	chr8:19690685-19690933(+)$1	1	42	46	11.9999
((((	chr16:84092880-84093131(-)$1	1	95	99	11.9999
..((	chr17:73654350-73654608(-)$1	1	65	69	11.9999
...)	chr21:47414018-47414244(+)$1	1	59	63	11.9999
..))	chr2:96949995-96950287(-)$1	1	25	29	11.9999
...(	chr20:34095551-34095779(+)$1	1	67	71	11.9999
..((	chr16:67914946-67915179(+)$1	1	35	39	11.9999
((((	chr20:24950059-24950320(-)$1	1	48	52	11.9999
((((	chr17:79207395-79207616(-)$1	1	40	44	11.9999
..))	chr7:150035370-150035600(-)$1	1	88	92	11.9999
.(((	chr11:65359178-65359443(+)$1	1	1	5	11.9999
..((	chr12:56716773-56717038(-)$1	1	190	194	11.9999
)).)	chr16:84216628-84216855(-)$1	1	24	28	11.9999
..))	chr10:5925831-5926087(-)$1	1	211	215	11.9999
((((	chr12:7076912-7077163(-)$1	1	148	152	11.9999
...(	chr8:145534766-145535003(+)$1	1	15	19	11.9999
.(((	chr9:136555506-136555737(-)$1	1	44	48	11.9999
))))	chr16:602516-602754(+)$1	1	10	14	11.9999
(((.	chr9:15422811-15423065(+)$1	1	34	38	11.9999
))))	chr7:2400300-2400556(+)$1	1	76	80	11.9999
(.(.	chr22:38019514-38019741(+)$1	1	41	45	11.9999
.((.	chr1:44441665-44441946(+)$1	1	93	97	11.9999
((((	chr14:105360950-105361194(+)$1	1	14	18	11.9999
((((	chr22:38153930-38154214(+)$1	1	92	96	11.9999
.(((	chr7:100478805-100479082(+)$1	1	44	48	11.9999
(..(	chr6:31726441-31726716(+)$1	1	16	20	11.9999
.(((	chr13:113835343-113835618(-)$1	1	13	17	11.9999
(((.	chr6:160183955-160184187(+)$1	1	30	34	11.9999
((((	chr17:42169722-42169947(-)$1	1	181	185	11.9999
(.((	chr15:99478444-99478689(+)$1	1	6	10	11.9999
((((	chr22:36712465-36712673(-)$1	1	58	62	11.9999
((.(	chr17:79862849-79863102(-)$1	1	2	6	11.9999
))))	chr14:76642861-76643150(+)$1	1	257	261	11.9999
(...	chr5:176981291-176981594(-)$1	1	1	5	11.9999

#PSSM
C : 0.96	c : 0.03	
A : 0.96	a : 0.03	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	

#score	1115.9999999999998
#seq	93
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_transcript_m1_run1.nuc.txt

#NT
CUGCAGC	chr17:74721446-74721701(-)$1	255	163	170	17.0144
CUGCGGC	chr19:10334493-10334783(-)$1	290	84	91	13.3188
CUGCAGC	chr19:4054108-4054359(-)$1	251	86	93	17.0144
CUGCAGC	chr1:10521476-10521764(-)$1	288	110	117	17.0144
CCGCAGC	chr2:9347457-9347704(+)$1	247	161	168	13.1739
CCGCAGC	chr11:66391829-66392073(+)$1	244	156	163	13.1739
CGGCAGC	chr1:27440193-27440449(-)$1	256	9	16	13.1739
CUGCAGU	chr1:111441738-111442032(+)$1	294	80	87	12.5217
CUGCCGC	chr10:15902077-15902324(-)$1	247	103	110	13.2463
GUGCAGC	chr19:45971754-45972002(+)$1	248	131	138	12.8115
CUGCAAC	chr16:57494605-57494876(+)$1	271	171	178	12.2318
CUGCAGC	chr5:180673880-180674102(+)$1	222	193	200	17.0144
GUGCAGC	chr3:41275055-41275369(+)$1	314	34	41	12.8115
CUGCACC	chr2:27884064-27884291(-)$1	227	136	143	12.2318
CUGCAGG	chr6:33372775-33373039(+)$1	264	6	13	12.5217
cagcagc	chr7:151879432-151879699(-)$1	267	92	99	13.1739
CUGCUGC	chr15:44876439-44876722(-)$1	283	164	171	13.5362
cuucagc	chr5:33469239-33469538(+)$1	299	61	68	12.7391
CUGCAGC	chr16:28109798-28110113(-)$1	315	128	135	17.0144
UUGCAGC	chr6:56966247-56966492(+)$1	245	117	124	12.7391
CGGCAGC	chr17:80044853-80045100(-)$1	247	60	67	13.1739
CUGUAGC	chr17:76354339-76354573(-)$1	234	175	182	12.7391
CUCCAGC	chr2:70315523-70315784(+)$1	261	134	141	12.7391
CUGCAGG	chr1:67895059-67895276(-)$1	217	152	159	12.5217
CUGCAGC	chr9:99180449-99180701(-)$1	252	143	150	17.0144
CUUCAGC	chr7:116593433-116593708(-)$1	275	104	111	12.7391
CUGCAGC	chr3:48719718-48719982(-)$1	264	101	108	17.0144
CUGCUGC	chr3:12625830-12626052(-)$1	222	145	152	13.5362
CUGGAGC	chr6:26124484-26124720(+)$1	236	165	172	12.8115
CUCCAGC	chr19:3573953-3574197(+)$1	244	127	134	12.7391
UUGCAGC	chr7:2419896-2420191(+)$1	295	11	18	12.7391
CUGCAGU	chr16:89662569-89662842(+)$1	273	5	12	12.5217
CAGCAGC	chr6:147525719-147525948(+)$1	229	12	19	13.1739
CUGCGGC	chr6:170067804-170068066(-)$1	262	209	216	13.3188
CUGGAGC	chr11:82868147-82868402(+)$1	255	63	70	12.8115
GUGCAGC	chr1:213032330-213032590(+)$1	260	46	53	12.8115
CUACAGC	chr12:124221638-124221922(+)$1	284	26	33	12.5942
CUGCGGC	chr19:17448391-17448645(+)$1	254	167	174	13.3188
CUGCCGC	chr22:19711480-19711723(+)$1	243	93	100	13.2463
GUGCAGC	chr1:150525375-150525605(+)$1	230	109	116	12.8115
CCGCAGC	chr16:67198554-67198796(+)$1	242	115	122	13.1739
CUGCAGC	chr12:133384376-133384652(-)$1	276	167	174	17.0144
CUGCUGC	chr3:44492284-44492526(-)$1	242	78	85	13.5362
CGGCAGC	chr9:128001442-128001650(-)$1	208	42	49	13.1739
CUCCAGC	chr22:38273577-38273844(+)$1	267	187	194	12.7391
CCGCAGC	chr21:36259161-36259424(-)$1	263	158	165	13.1739
CUGCAGC	chr4:56262314-56262565(+)$1	251	198	205	17.0144
UUGCAGC	chr1:31532145-31532408(-)$1	263	161	168	12.7391
CUGGAGC	chr12:123350848-123351093(-)$1	245	130	137	12.8115
CUGCUGC	chr3:167812888-167813138(-)$1	250	113	120	13.5362
CAGCAGC	chr19:3193236-3193472(+)$1	236	12	19	13.1739
CUGCAGA	chr12:116429033-116429296(-)$1	263	124	131	12.4492
CUGCGGC	chr11:9595783-9596093(+)$1	310	122	129	13.3188
CUGUAGC	chr5:74638346-74638590(+)$1	244	73	80	12.7391
CUGCAGC	chr6:12120290-12120569(+)$1	279	146	153	17.0144
CGGCAGC	chr5:95067010-95067236(+)$1	226	152	159	13.1739
CUGCUGC	chr1:38174222-38174490(+)$1	268	91	98	13.5362
CUGCCGC	chr10:103867991-103868204(-)$1	213	61	68	13.2463
CUGAAGC	chr3:9876450-9876712(+)$1	262	126	133	12.8115
CUGAAGC	chr10:99093381-99093644(-)$1	263	90	97	12.8115
CUGCUGC	chr17:7405277-7405525(+)$1	248	207	214	13.5362
CUGCAGC	chr19:54972006-54972261(+)$1	255	132	139	17.0144
CUGAAGC	chr16:89662021-89662267(+)$1	246	148	155	12.8115
CUGCAGC	chr20:49194069-49194326(+)$1	257	180	187	17.0144
CUGCAGC	chr6:42713348-42713603(-)$1	255	182	189	17.0144
CUUCAGC	chr3:38049120-38049387(-)$1	267	240	247	12.7391
CUGCUGC	chr7:97498255-97498470(-)$1	215	127	134	13.5362
CUGCAGC	chr9:74970847-74971092(-)$1	245	162	169	17.0144

#otherMatches

#Struct PSSM
:::::ee	chr17:33930706-33930977(+)$1	271	161	168	13.1739
dddd]cc	chr17:74721446-74721701(-)$1	255	163	170	17.0144
dd[ammm	chr19:10334493-10334783(-)$1	290	84	91	13.3188
cc[bb[a	chr19:4054108-4054359(-)$1	251	86	93	17.0144
ccclllc	chr1:10521476-10521764(-)$1	288	110	117	17.0144
EEEKKCC	chr2:9347457-9347704(+)$1	247	161	168	13.1739
!eeeeem	chr11:66391829-66392073(+)$1	244	156	163	13.1739
meeeee:	chr1:27440193-27440449(-)$1	256	9	16	13.1739
eeeeeee	chr1:111441738-111442032(+)$1	294	80	87	12.5217
:::::ff	chr10:15902077-15902324(-)$1	247	103	110	13.2463
ddd[bbl	chr19:45971754-45972002(+)$1	248	131	138	12.8115
llccc:e	chr16:57494605-57494876(+)$1	271	171	178	12.2318
dd[cccl	chr5:180673880-180674102(+)$1	222	193	200	17.0144
EE{EEEE	chr3:41275055-41275369(+)$1	314	34	41	12.8115
:::::::	chr2:27884064-27884291(-)$1	227	136	143	12.2318
::fffff	chr6:33372775-33373039(+)$1	264	6	13	12.5217
b[bbmmm	chr7:151879432-151879699(-)$1	267	92	99	13.1739
eeeeeFF	chr15:44876439-44876722(-)$1	283	164	171	13.5362
GGGGGG:	chr5:33469239-33469538(+)$1	299	61	68	12.7391
nneeeee	chr16:28109798-28110113(-)$1	315	128	135	17.0144
hheeeee	chr6:56966247-56966492(+)$1	245	117	124	12.7391
{FFFFFF	chr17:80044853-80045100(-)$1	247	60	67	13.1739
eee::::	chr17:76354339-76354573(-)$1	234	175	182	12.7391
?????BB	chr2:70315523-70315784(+)$1	261	134	141	12.7391
G}BB}BB	chr1:67895059-67895276(-)$1	217	152	159	12.5217
55hhhhh	chr9:99180449-99180701(-)$1	252	143	150	17.0144
pppppff	chr7:116593433-116593708(-)$1	275	104	111	12.7391
ffppppp	chr3:48719718-48719982(-)$1	264	101	108	17.0144
cmmmmcc	chr3:12625830-12626052(-)$1	222	145	152	13.5362
::HHHHH	chr6:26124484-26124720(+)$1	236	165	172	12.8115
[bbnnnn	chr19:3573953-3574197(+)$1	244	127	134	12.7391
::hhhhh	chr7:2419896-2420191(+)$1	295	11	18	12.7391
ccc[ddd	chr16:89662569-89662842(+)$1	273	5	12	12.5217
b[bb[bb	chr6:147525719-147525948(+)$1	229	12	19	13.1739
22=====	chr6:170067804-170068066(-)$1	262	209	216	13.3188
b[bb!!c	chr11:82868147-82868402(+)$1	255	63	70	12.8115
c[ccc[b	chr1:213032330-213032590(+)$1	260	46	53	12.8115
CC:dddd	chr12:124221638-124221922(+)$1	284	26	33	12.5942
GGGccc[	chr19:17448391-17448645(+)$1	254	167	174	13.3188
ELLLCCC	chr22:19711480-19711723(+)$1	243	93	100	13.2463
[dddd$$	chr1:150525375-150525605(+)$1	230	109	116	12.8115
ffff:::	chr16:67198554-67198796(+)$1	242	115	122	13.1739
ffflllf	chr12:133384376-133384652(-)$1	276	167	174	17.0144
ccc22a3	chr3:44492284-44492526(-)$1	242	78	85	13.5362
&ccc###	chr9:128001442-128001650(-)$1	208	42	49	13.1739
bb4444c	chr22:38273577-38273844(+)$1	267	187	194	12.7391
ZZA}CCC	chr21:36259161-36259424(-)$1	263	158	165	13.1739
YYFFFFF	chr4:56262314-56262565(+)$1	251	198	205	17.0144
=======	chr1:31532145-31532408(-)$1	263	161	168	12.7391
c55555f	chr12:123350848-123351093(-)$1	245	130	137	12.8115
gggggg[	chr3:167812888-167813138(-)$1	250	113	120	13.5362
KKFFFFF	chr19:3193236-3193472(+)$1	236	12	19	13.1739
:::::bb	chr12:116429033-116429296(-)$1	263	124	131	12.4492
=======	chr11:9595783-9596093(+)$1	310	122	129	13.3188
gggHHHH	chr5:74638346-74638590(+)$1	244	73	80	12.7391
ff:::::	chr6:12120290-12120569(+)$1	279	146	153	17.0144
fff!!bb	chr5:95067010-95067236(+)$1	226	152	159	13.1739
GGLLLCC	chr1:38174222-38174490(+)$1	268	91	98	13.5362
fffff]d	chr10:103867991-103868204(-)$1	213	61	68	13.2463
]eeeee]	chr3:9876450-9876712(+)$1	262	126	133	12.8115
::::::b	chr10:99093381-99093644(-)$1	263	90	97	12.8115
eeeeedd	chr17:7405277-7405525(+)$1	248	207	214	13.5362
:hhhhhh	chr19:54972006-54972261(+)$1	255	132	139	17.0144
888888f	chr16:89662021-89662267(+)$1	246	148	155	12.8115
::dddd[	chr20:49194069-49194326(+)$1	257	180	187	17.0144
bbGGGGG	chr6:42713348-42713603(-)$1	255	182	189	17.0144
dd22ccc	chr3:38049120-38049387(-)$1	267	240	247	12.7391
=======	chr7:97498255-97498470(-)$1	215	127	134	13.5362
DDZZZDD	chr9:74970847-74971092(-)$1	245	162	169	17.0144

#DB
.....((	chr17:33930706-33930977(+)$1	1	161	168	13.1739
)))).))	chr17:74721446-74721701(-)$1	1	163	170	17.0144
((.(...	chr19:10334493-10334783(-)$1	1	84	91	13.3188
((.((.(	chr19:4054108-4054359(-)$1	1	86	93	17.0144
(((...)	chr1:10521476-10521764(-)$1	1	110	117	17.0144
(((..((	chr2:9347457-9347704(+)$1	1	161	168	13.1739
.(((((.	chr11:66391829-66392073(+)$1	1	156	163	13.1739
.))))).	chr1:27440193-27440449(-)$1	1	9	16	13.1739
)))))))	chr1:111441738-111442032(+)$1	1	80	87	12.5217
.....((	chr10:15902077-15902324(-)$1	1	103	110	13.2463
(((.((.	chr19:45971754-45972002(+)$1	1	131	138	12.8115
..))).(	chr16:57494605-57494876(+)$1	1	171	178	12.2318
((.(((.	chr5:180673880-180674102(+)$1	1	193	200	17.0144
((.((((	chr3:41275055-41275369(+)$1	1	34	41	12.8115
.......	chr2:27884064-27884291(-)$1	1	136	143	12.2318
..(((((	chr6:33372775-33373039(+)$1	1	6	13	12.5217
(.((...	chr7:151879432-151879699(-)$1	1	92	99	13.1739
)))))))	chr15:44876439-44876722(-)$1	1	164	171	13.5362
((((((.	chr5:33469239-33469538(+)$1	1	61	68	12.7391
..)))))	chr16:28109798-28110113(-)$1	1	128	135	17.0144
))(((((	chr6:56966247-56966492(+)$1	1	117	124	12.7391
.((((((	chr17:80044853-80045100(-)$1	1	60	67	13.1739
)))....	chr17:76354339-76354573(-)$1	1	175	182	12.7391
.....))	chr2:70315523-70315784(+)$1	1	134	141	12.7391
).)).))	chr1:67895059-67895276(-)$1	1	152	159	12.5217
..)))))	chr9:99180449-99180701(-)$1	1	143	150	17.0144
.....))	chr7:116593433-116593708(-)$1	1	104	111	12.7391
((.....	chr3:48719718-48719982(-)$1	1	101	108	17.0144
(....))	chr3:12625830-12626052(-)$1	1	145	152	13.5362
..)))))	chr6:26124484-26124720(+)$1	1	165	172	12.8115
.((....	chr19:3573953-3574197(+)$1	1	127	134	12.7391
..(((((	chr7:2419896-2420191(+)$1	1	11	18	12.7391
(((.(((	chr16:89662569-89662842(+)$1	1	5	12	12.5217
(.((.((	chr6:147525719-147525948(+)$1	1	12	19	13.1739
..)))))	chr6:170067804-170068066(-)$1	1	209	216	13.3188
(.((..(	chr11:82868147-82868402(+)$1	1	63	70	12.8115
(.(((.(	chr1:213032330-213032590(+)$1	1	46	53	12.8115
((.((((	chr12:124221638-124221922(+)$1	1	26	33	12.5942
)))(((.	chr19:17448391-17448645(+)$1	1	167	174	13.3188
(...(((	chr22:19711480-19711723(+)$1	1	93	100	13.2463
.((((..	chr1:150525375-150525605(+)$1	1	109	116	12.8115
))))...	chr16:67198554-67198796(+)$1	1	115	122	13.1739
(((...)	chr12:133384376-133384652(-)$1	1	167	174	17.0144
)))..).	chr3:44492284-44492526(-)$1	1	78	85	13.5362
.(((...	chr9:128001442-128001650(-)$1	1	42	49	13.1739
))....)	chr22:38273577-38273844(+)$1	1	187	194	12.7391
..).)))	chr21:36259161-36259424(-)$1	1	158	165	13.1739
..)))))	chr4:56262314-56262565(+)$1	1	198	205	17.0144
)))))))	chr1:31532145-31532408(-)$1	1	161	168	12.7391
).....)	chr12:123350848-123351093(-)$1	1	130	137	12.8115
((((((.	chr3:167812888-167813138(-)$1	1	113	120	13.5362
..(((((	chr19:3193236-3193472(+)$1	1	12	19	13.1739
.....((	chr12:116429033-116429296(-)$1	1	124	131	12.4492
(((((((	chr11:9595783-9596093(+)$1	1	122	129	13.3188
)))((((	chr5:74638346-74638590(+)$1	1	73	80	12.7391
)).....	chr6:12120290-12120569(+)$1	1	146	153	17.0144
(((..((	chr5:95067010-95067236(+)$1	1	152	159	13.1739
((...((	chr1:38174222-38174490(+)$1	1	91	98	13.5362
))))).)	chr10:103867991-103868204(-)$1	1	61	68	13.2463
.))))).	chr3:9876450-9876712(+)$1	1	126	133	12.8115
......(	chr10:99093381-99093644(-)$1	1	90	97	12.8115
)))))))	chr17:7405277-7405525(+)$1	1	207	214	13.5362
.((((((	chr19:54972006-54972261(+)$1	1	132	139	17.0144
......)	chr16:89662021-89662267(+)$1	1	148	155	12.8115
..((((.	chr20:49194069-49194326(+)$1	1	180	187	17.0144
)))))))	chr6:42713348-42713603(-)$1	1	182	189	17.0144
))..)))	chr3:38049120-38049387(-)$1	1	240	247	12.7391
(((((((	chr7:97498255-97498470(-)$1	1	127	134	13.5362
))...))	chr9:74970847-74971092(-)$1	1	162	169	17.0144

#PSSM
C : 0.86	G : 0.05	U : 0.04	c : 0.02	
U : 0.81	C : 0.05	G : 0.05	A : 0.04	a : 0.01	u : 0.01	
G : 0.88	C : 0.04	U : 0.02	g : 0.01	u : 0.01	A : 0.01	
C : 0.85	G : 0.04	A : 0.04	c : 0.02	U : 0.02	
A : 0.76	U : 0.10	G : 0.05	C : 0.04	a : 0.02	
G : 0.94	g : 0.02	A : 0.01	C : 0.01	
C : 0.89	U : 0.02	G : 0.02	c : 0.02	A : 0.01	

#score	951.8985507246364
#seq	69
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_transcript_m3_run2.nuc.txt

#NT
GGA	chr17:79965333-79965578(+)$1	245	36	39	9.0000
gga	chr17:76889519-76889765(-)$1	246	35	38	9.0000
GGA	chr1:230401281-230401554(+)$1	273	49	52	9.0000
GGA	chr11:2152089-2152296(-)$1	207	51	54	9.0000
gga	chr22:37586342-37586633(-)$1	291	34	37	9.0000
GGA	chr21:46858175-46858512(+)$1	337	160	163	9.0000
GGA	chr11:115373920-115374172(-)$1	252	22	25	9.0000
GGA	chr20:3451908-3452141(+)$1	233	142	145	9.0000
GGA	chr19:45865520-45865771(-)$1	251	68	71	9.0000
GGA	chr17:881789-882038(-)$1	249	14	17	9.0000
GGA	chr17:17132469-17132721(-)$1	252	106	109	9.0000
GGA	chr11:70425146-70425422(-)$1	276	9	12	9.0000
GGA	chr7:157800793-157801052(-)$1	259	113	116	9.0000
GGA	chr20:34241138-34241356(-)$1	218	14	17	9.0000
GGA	chr2:27273606-27273818(+)$1	212	39	42	9.0000
gga	chr1:19252114-19252405(-)$1	291	213	216	9.0000
GGA	chr1:153918131-153918375(-)$1	244	2	5	9.0000
gga	chrX:38466679-38466935(+)$1	256	59	62	9.0000
GGA	chr9:137310540-137310802(+)$1	262	141	144	9.0000
gga	chr11:111170529-111170780(+)$1	251	8	11	9.0000
GGA	chr7:157580402-157580669(-)$1	267	13	16	9.0000
GGA	chr17:49336717-49337030(-)$1	313	37	40	9.0000
gga	chr11:78244077-78244297(-)$1	220	25	28	9.0000
gga	chr9:140164074-140164341(+)$1	267	90	93	9.0000
GGA	chr16:89449563-89449787(-)$1	224	10	13	9.0000
GGA	chr10:125818882-125819128(-)$1	246	17	20	9.0000
gga	chr12:123993304-123993515(-)$1	211	34	37	9.0000
GGA	chr6:2377334-2377599(+)$1	265	14	17	9.0000
gga	chr20:33046341-33046603(+)$1	262	12	15	9.0000
gga	chr17:80785916-80786179(+)$1	263	168	171	9.0000
gga	chr9:14827767-14828008(-)$1	241	28	31	9.0000
GGA	chr20:31605432-31605674(+)$1	242	36	39	9.0000
GGA	chr14:99985096-99985332(-)$1	236	51	54	9.0000
GGA	chr11:63916868-63917119(-)$1	251	56	59	9.0000
GGA	chr15:67381639-67381884(+)$1	245	83	86	9.0000
GGA	chr1:94066553-94066818(+)$1	265	0	3	9.0000
GGA	chr20:60817160-60817403(+)$1	243	99	102	9.0000
GGA	chr22:38887530-38887766(-)$1	236	47	50	9.0000
GGA	chrX:109560905-109561214(-)$1	309	17	20	9.0000
GGA	chr17:37309869-37310101(-)$1	232	197	200	9.0000
GGA	chr17:41844197-41844410(-)$1	213	77	80	9.0000
GGA	chr1:245012925-245013254(-)$1	329	65	68	9.0000
gga	chr19:35505923-35506136(+)$1	213	45	48	9.0000
gga	chr1:182838487-182838808(+)$1	321	20	23	9.0000
GGA	chr2:241467568-241467821(-)$1	253	80	83	9.0000
gga	chr2:216894291-216894588(-)$1	297	114	117	9.0000
GGA	chr15:66084080-66084309(-)$1	229	1	4	9.0000
gga	chr16:21645572-21645804(+)$1	232	70	73	9.0000
GGA	chr20:17615112-17615357(-)$1	245	2	5	9.0000
GGA	chr3:129294613-129294900(-)$1	287	26	29	9.0000
GGA	chr11:2153462-2153675(-)$1	213	4	7	9.0000
GGA	chr1:12644382-12644605(-)$1	223	60	63	9.0000
GGA	chr19:42711142-42711426(-)$1	284	57	60	9.0000
GGA	chr12:133109349-133109700(+)$1	351	37	40	9.0000
GGA	chr9:117008633-117008853(+)$1	220	82	85	9.0000
GGA	chr9:139756941-139757222(-)$1	281	24	27	9.0000
GGA	chr16:340353-340599(-)$1	246	165	168	9.0000
GGA	chr16:691237-691478(-)$1	241	67	70	9.0000
gga	chr7:150777269-150777557(-)$1	288	41	44	9.0000
GGA	chr8:21960875-21961152(+)$1	277	17	20	9.0000
GGA	chr16:1412237-1412491(+)$1	254	95	98	9.0000
GGA	chr16:11664147-11664370(-)$1	223	15	18	9.0000
GGA	chr11:2152297-2152513(-)$1	216	27	30	9.0000
GGA	chr19:39203458-39203748(+)$1	290	36	39	9.0000
GGA	chr13:114266573-114266842(+)$1	269	91	94	9.0000
GGA	chr14:99985132-99985355(-)$1	223	14	17	9.0000
gga	chr15:42517637-42517885(-)$1	248	32	35	9.0000
GGA	chr19:2228715-2228996(+)$1	281	121	124	9.0000
gga	chr21:45080435-45080715(+)$1	280	30	33	9.0000
GGA	chr17:70117925-70118173(+)$1	248	34	37	9.0000
GGA	chr4:1218303-1218641(-)$1	338	62	65	9.0000
GGA	chr2:11735116-11735347(+)$1	231	46	49	9.0000
GGA	chr7:158043861-158044114(-)$1	253	102	105	9.0000
gga	chr17:35653552-35653804(-)$1	252	18	21	9.0000
GGA	chr19:11030930-11031183(+)$1	253	29	32	9.0000
GGA	chr8:134251341-134251595(-)$1	254	74	77	9.0000
GGA	chr2:20787717-20787934(-)$1	217	58	61	9.0000
gga	chr4:152201946-152202193(-)$1	247	0	3	9.0000
GGA	chr17:73966577-73966849(-)$1	272	42	45	9.0000
GGA	chr12:2874525-2874785(-)$1	260	8	11	9.0000
gga	chr8:42716402-42716672(-)$1	270	24	27	9.0000
GGA	chr16:22338385-22338622(+)$1	237	116	119	9.0000
GGA	chr14:31642714-31643003(-)$1	289	0	3	9.0000
GGA	chr12:123998121-123998386(-)$1	265	158	161	9.0000
GGA	chr17:79916342-79916607(-)$1	265	9	12	9.0000
gga	chr3:160282521-160282776(-)$1	255	15	18	9.0000
ggA	chr17:46178287-46178580(-)$1	293	10	13	9.0000
GGA	chr16:69779420-69779637(-)$1	217	9	12	9.0000
gga	chr11:17953214-17953471(-)$1	257	40	43	9.0000
GGA	chr1:21113391-21113631(-)$1	240	11	14	9.0000
GGA	chr18:13300873-13301139(+)$1	266	2	5	9.0000
gga	chr6:16458973-16459189(-)$1	216	100	103	9.0000
GGA	chr2:10539632-10539848(+)$1	216	109	112	9.0000
GGA	chr18:9608324-9608602(-)$1	278	19	22	9.0000

#otherMatches

#Struct PSSM
JJ{	chr19:7661026-7661290(+)$1	264	25	28	9.0000
oob	chr17:79965333-79965578(+)$1	245	36	39	9.0000
bb:	chr17:76889519-76889765(-)$1	246	35	38	9.0000
BB{	chr1:230401281-230401554(+)$1	273	49	52	9.0000
f22	chr11:2152089-2152296(-)$1	207	51	54	9.0000
dd3	chr22:37586342-37586633(-)$1	291	34	37	9.0000
cll	chr21:46858175-46858512(+)$1	337	160	163	9.0000
]ah	chr11:115373920-115374172(-)$1	252	22	25	9.0000
bb!	chr20:3451908-3452141(+)$1	233	142	145	9.0000
hh:	chr19:45865520-45865771(-)$1	251	68	71	9.0000
HHH	chr17:881789-882038(-)$1	249	14	17	9.0000
mmb	chr17:17132469-17132721(-)$1	252	106	109	9.0000
g[b	chr11:70425146-70425422(-)$1	276	9	12	9.0000
Dcc	chr7:157800793-157801052(-)$1	259	113	116	9.0000
cc6	chr20:34241138-34241356(-)$1	218	14	17	9.0000
EEE	chr2:27273606-27273818(+)$1	212	39	42	9.0000
att	chr1:19252114-19252405(-)$1	291	213	216	9.0000
:FF	chr1:153918131-153918375(-)$1	244	2	5	9.0000
fhh	chrX:38466679-38466935(+)$1	256	59	62	9.0000
EEE	chr9:137310540-137310802(+)$1	262	141	144	9.0000
LLL	chr11:111170529-111170780(+)$1	251	8	11	9.0000
DD:	chr7:157580402-157580669(-)$1	267	13	16	9.0000
ccc	chr17:49336717-49337030(-)$1	313	37	40	9.0000
uhh	chr11:78244077-78244297(-)$1	220	25	28	9.0000
gg"	chr9:140164074-140164341(+)$1	267	90	93	9.0000
:GG	chr16:89449563-89449787(-)$1	224	10	13	9.0000
ooo	chr10:125818882-125819128(-)$1	246	17	20	9.0000
ff%	chr12:123993304-123993515(-)$1	211	34	37	9.0000
mbb	chr6:2377334-2377599(+)$1	265	14	17	9.0000
:::	chr20:33046341-33046603(+)$1	262	12	15	9.0000
ddm	chr17:80785916-80786179(+)$1	263	168	171	9.0000
::c	chr9:14827767-14828008(-)$1	241	28	31	9.0000
!!a	chr20:31605432-31605674(+)$1	242	36	39	9.0000
ggg	chr14:99985096-99985332(-)$1	236	51	54	9.0000
:::	chr11:63916868-63917119(-)$1	251	56	59	9.0000
===	chr15:67381639-67381884(+)$1	245	83	86	9.0000
::g	chr1:94066553-94066818(+)$1	265	0	3	9.0000
hmm	chr20:60817160-60817403(+)$1	243	99	102	9.0000
ccc	chr22:38887530-38887766(-)$1	236	47	50	9.0000
ddd	chrX:109560905-109561214(-)$1	309	17	20	9.0000
cgg	chr17:37309869-37310101(-)$1	232	197	200	9.0000
ma]	chr17:41844197-41844410(-)$1	213	77	80	9.0000
EEC	chr1:245012925-245013254(-)$1	329	65	68	9.0000
2ff	chr19:35505923-35506136(+)$1	213	45	48	9.0000
iii	chr1:182838487-182838808(+)$1	321	20	23	9.0000
bb3	chr2:241467568-241467821(-)$1	253	80	83	9.0000
[gg	chr2:216894291-216894588(-)$1	297	114	117	9.0000
DDD	chr15:66084080-66084309(-)$1	229	1	4	9.0000
ccc	chr16:21645572-21645804(+)$1	232	70	73	9.0000
fff	chr20:17615112-17615357(-)$1	245	2	5	9.0000
dd[	chr3:129294613-129294900(-)$1	287	26	29	9.0000
BB{	chr11:2153462-2153675(-)$1	213	4	7	9.0000
ooo	chr1:12644382-12644605(-)$1	223	60	63	9.0000
qqq	chr19:42711142-42711426(-)$1	284	57	60	9.0000
i""	chr12:133109349-133109700(+)$1	351	37	40	9.0000
lll	chr9:117008633-117008853(+)$1	220	82	85	9.0000
ddd	chr9:139756941-139757222(-)$1	281	24	27	9.0000
ccc	chr16:340353-340599(-)$1	246	165	168	9.0000
===	chr16:691237-691478(-)$1	241	67	70	9.0000
e!!	chr7:150777269-150777557(-)$1	288	41	44	9.0000
FFF	chr8:21960875-21961152(+)$1	277	17	20	9.0000
[a[	chr16:1412237-1412491(+)$1	254	95	98	9.0000
G::	chr16:11664147-11664370(-)$1	223	15	18	9.0000
dd2	chr11:2152297-2152513(-)$1	216	27	30	9.0000
eee	chr19:39203458-39203748(+)$1	290	36	39	9.0000
===	chr13:114266573-114266842(+)$1	269	91	94	9.0000
DD{	chr14:99985132-99985355(-)$1	223	14	17	9.0000
ddd	chr15:42517637-42517885(-)$1	248	32	35	9.0000
ee]	chr19:2228715-2228996(+)$1	281	121	124	9.0000
:::	chr21:45080435-45080715(+)$1	280	30	33	9.0000
hh[	chr17:70117925-70118173(+)$1	248	34	37	9.0000
bff	chr4:1218303-1218641(-)$1	338	62	65	9.0000
llg	chr2:11735116-11735347(+)$1	231	46	49	9.0000
BB}	chr7:158043861-158044114(-)$1	253	102	105	9.0000
a]d	chr17:35653552-35653804(-)$1	252	18	21	9.0000
dd[	chr19:11030930-11031183(+)$1	253	29	32	9.0000
ccc	chr8:134251341-134251595(-)$1	254	74	77	9.0000
ddd	chr2:20787717-20787934(-)$1	217	58	61	9.0000
CCC	chr4:152201946-152202193(-)$1	247	0	3	9.0000
GGG	chr17:73966577-73966849(-)$1	272	42	45	9.0000
ddd	chr12:2874525-2874785(-)$1	260	8	11	9.0000
dd:	chr8:42716402-42716672(-)$1	270	24	27	9.0000
BB}	chr16:22338385-22338622(+)$1	237	116	119	9.0000
DDD	chr14:31642714-31643003(-)$1	289	0	3	9.0000
iii	chr12:123998121-123998386(-)$1	265	158	161	9.0000
hhh	chr17:79916342-79916607(-)$1	265	9	12	9.0000
cgg	chr3:160282521-160282776(-)$1	255	15	18	9.0000
mmm	chr17:46178287-46178580(-)$1	293	10	13	9.0000
:EE	chr16:69779420-69779637(-)$1	217	9	12	9.0000
ii[	chr11:17953214-17953471(-)$1	257	40	43	9.0000
mmm	chr1:21113391-21113631(-)$1	240	11	14	9.0000
:::	chr18:13300873-13301139(+)$1	266	2	5	9.0000
bbd	chr6:16458973-16459189(-)$1	216	100	103	9.0000
mee	chr2:10539632-10539848(+)$1	216	109	112	9.0000
HHL	chr18:9608324-9608602(-)$1	278	19	22	9.0000

#DB
((.	chr19:7661026-7661290(+)$1	1	25	28	9.0000
..)	chr17:79965333-79965578(+)$1	1	36	39	9.0000
)).	chr17:76889519-76889765(-)$1	1	35	38	9.0000
((.	chr1:230401281-230401554(+)$1	1	49	52	9.0000
)..	chr11:2152089-2152296(-)$1	1	51	54	9.0000
)).	chr22:37586342-37586633(-)$1	1	34	37	9.0000
(..	chr21:46858175-46858512(+)$1	1	160	163	9.0000
.)(	chr11:115373920-115374172(-)$1	1	22	25	9.0000
((.	chr20:3451908-3452141(+)$1	1	142	145	9.0000
)).	chr19:45865520-45865771(-)$1	1	68	71	9.0000
(((	chr17:881789-882038(-)$1	1	14	17	9.0000
..)	chr17:17132469-17132721(-)$1	1	106	109	9.0000
(.(	chr11:70425146-70425422(-)$1	1	9	12	9.0000
(((	chr7:157800793-157801052(-)$1	1	113	116	9.0000
)).	chr20:34241138-34241356(-)$1	1	14	17	9.0000
(((	chr2:27273606-27273818(+)$1	1	39	42	9.0000
(..	chr1:19252114-19252405(-)$1	1	213	216	9.0000
.((	chr1:153918131-153918375(-)$1	1	2	5	9.0000
)))	chrX:38466679-38466935(+)$1	1	59	62	9.0000
)))	chr9:137310540-137310802(+)$1	1	141	144	9.0000
...	chr11:111170529-111170780(+)$1	1	8	11	9.0000
((.	chr7:157580402-157580669(-)$1	1	13	16	9.0000
(((	chr17:49336717-49337030(-)$1	1	37	40	9.0000
.))	chr11:78244077-78244297(-)$1	1	25	28	9.0000
((.	chr9:140164074-140164341(+)$1	1	90	93	9.0000
.((	chr16:89449563-89449787(-)$1	1	10	13	9.0000
...	chr10:125818882-125819128(-)$1	1	17	20	9.0000
((.	chr12:123993304-123993515(-)$1	1	34	37	9.0000
.))	chr6:2377334-2377599(+)$1	1	14	17	9.0000
...	chr20:33046341-33046603(+)$1	1	12	15	9.0000
((.	chr17:80785916-80786179(+)$1	1	168	171	9.0000
..(	chr9:14827767-14828008(-)$1	1	28	31	9.0000
..(	chr20:31605432-31605674(+)$1	1	36	39	9.0000
(((	chr14:99985096-99985332(-)$1	1	51	54	9.0000
...	chr11:63916868-63917119(-)$1	1	56	59	9.0000
(((	chr15:67381639-67381884(+)$1	1	83	86	9.0000
..(	chr1:94066553-94066818(+)$1	1	0	3	9.0000
(..	chr20:60817160-60817403(+)$1	1	99	102	9.0000
(((	chr22:38887530-38887766(-)$1	1	47	50	9.0000
)))	chrX:109560905-109561214(-)$1	1	17	20	9.0000
)))	chr17:37309869-37310101(-)$1	1	197	200	9.0000
.).	chr17:41844197-41844410(-)$1	1	77	80	9.0000
(((	chr1:245012925-245013254(-)$1	1	65	68	9.0000
.))	chr19:35505923-35506136(+)$1	1	45	48	9.0000
(((	chr1:182838487-182838808(+)$1	1	20	23	9.0000
)).	chr2:241467568-241467821(-)$1	1	80	83	9.0000
.((	chr2:216894291-216894588(-)$1	1	114	117	9.0000
(((	chr15:66084080-66084309(-)$1	1	1	4	9.0000
(((	chr16:21645572-21645804(+)$1	1	70	73	9.0000
(((	chr20:17615112-17615357(-)$1	1	2	5	9.0000
((.	chr3:129294613-129294900(-)$1	1	26	29	9.0000
((.	chr11:2153462-2153675(-)$1	1	4	7	9.0000
...	chr1:12644382-12644605(-)$1	1	60	63	9.0000
...	chr19:42711142-42711426(-)$1	1	57	60	9.0000
(..	chr12:133109349-133109700(+)$1	1	37	40	9.0000
...	chr9:117008633-117008853(+)$1	1	82	85	9.0000
(((	chr9:139756941-139757222(-)$1	1	24	27	9.0000
(((	chr16:340353-340599(-)$1	1	165	168	9.0000
(((	chr16:691237-691478(-)$1	1	67	70	9.0000
(..	chr7:150777269-150777557(-)$1	1	41	44	9.0000
(((	chr8:21960875-21961152(+)$1	1	17	20	9.0000
.(.	chr16:1412237-1412491(+)$1	1	95	98	9.0000
(..	chr16:11664147-11664370(-)$1	1	15	18	9.0000
)).	chr11:2152297-2152513(-)$1	1	27	30	9.0000
)))	chr19:39203458-39203748(+)$1	1	36	39	9.0000
(((	chr13:114266573-114266842(+)$1	1	91	94	9.0000
((.	chr14:99985132-99985355(-)$1	1	14	17	9.0000
)))	chr15:42517637-42517885(-)$1	1	32	35	9.0000
)).	chr19:2228715-2228996(+)$1	1	121	124	9.0000
...	chr21:45080435-45080715(+)$1	1	30	33	9.0000
((.	chr17:70117925-70118173(+)$1	1	34	37	9.0000
(((	chr4:1218303-1218641(-)$1	1	62	65	9.0000
..)	chr2:11735116-11735347(+)$1	1	46	49	9.0000
)).	chr7:158043861-158044114(-)$1	1	102	105	9.0000
).)	chr17:35653552-35653804(-)$1	1	18	21	9.0000
((.	chr19:11030930-11031183(+)$1	1	29	32	9.0000
)))	chr8:134251341-134251595(-)$1	1	74	77	9.0000
(((	chr2:20787717-20787934(-)$1	1	58	61	9.0000
(((	chr4:152201946-152202193(-)$1	1	0	3	9.0000
(((	chr17:73966577-73966849(-)$1	1	42	45	9.0000
)))	chr12:2874525-2874785(-)$1	1	8	11	9.0000
)).	chr8:42716402-42716672(-)$1	1	24	27	9.0000
)).	chr16:22338385-22338622(+)$1	1	116	119	9.0000
(((	chr14:31642714-31643003(-)$1	1	0	3	9.0000
)))	chr12:123998121-123998386(-)$1	1	158	161	9.0000
(((	chr17:79916342-79916607(-)$1	1	9	12	9.0000
(((	chr3:160282521-160282776(-)$1	1	15	18	9.0000
...	chr17:46178287-46178580(-)$1	1	10	13	9.0000
.((	chr16:69779420-69779637(-)$1	1	9	12	9.0000
((.	chr11:17953214-17953471(-)$1	1	40	43	9.0000
...	chr1:21113391-21113631(-)$1	1	11	14	9.0000
...	chr18:13300873-13301139(+)$1	1	2	5	9.0000
))(	chr6:16458973-16459189(-)$1	1	100	103	9.0000
.))	chr2:10539632-10539848(+)$1	1	109	112	9.0000
((.	chr18:9608324-9608602(-)$1	1	19	22	9.0000

#PSSM
G : 0.72	g : 0.27	
G : 0.72	g : 0.27	
A : 0.73	a : 0.26	

#score	855.0000000000001
#seq	95
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_CDS_m2_run2.nuc.txt

#NT
UUGGUGGUAAAUGUGCCACGUCUUCUAAGAAGGGGGAGUCCUGAACUUGUCUGAAGCCCUUGUCCGUAAGCCUUGAACUACGUUCUUAAAUCUAUGAAGUCGAGGGACCUUUCGCUGCUUUUGUAGGGACUUCUUUCCUUGCUUCAGCAACAUGAGGCUUUUCUUGUGGAACGCGGUCUUGACUCUGUUCGUCACUUCUUUGAUUGGGGCUUUGAUCCCUGAACCAGAAGUGAAAAUUGAAGUUCUCCAGAAGCCAUUCAUCUGCCAUCGCAAGACCAAAGGAGGGGAUUUGAUGUUGGUCCACUAUGAAGGCUACUUAGAAAAGGACGGCUCCUUAUUUCACUCCACGUAAGUAAUUAUGCCCCGCAGGUAAAAUAGUAAUUAAGA	chr7:30065887-30066276(-)$1	389	1	388	483.5000

#otherMatches

#Struct PSSM
ddddnnnnndddd::::::::EEEEEgggggggssssssssssggggggg::::::::::::GGGGGGG:::::::::::::cccpppppppccc:::eeeee!!dddd[bboooooobbddddeeeee::::EEEEE:::::::CCC{FFFFFFccc[eeeee&&&&&&&bb[eeeee[bbmmmmbbeeeeebb666666eeeee22ccc::::::::::::::::::ddddnnnnndddd::::::::::::::::ddddpppppppdddd::::::::FFFFFF}CCC:HHHHHHHH{CCCCCChhhhhhhh[eeeee[bblllbb]eeeee]hhhhhhhhccccccooooooccc]ccc:CCC}CCCHHHHHHHHYYEEEEE~	chr17:34851853-34852263(-)$1	410	3	390	483.5000
B{BB{DDDDMMMMCCC{DDDDQQQQQQQQFFFFFFKKEEEEEDDDDKKCCCKKCCC{BB{CCCEEEEEFFFFFFddddllldddd:::::::::eeeee[ggggggg####bb[ddddmmmmdddd]bb55555gggggggeeeee:::::::FFFFFF?????EEEEE}CCC}BB}CCCCCCZZZDDDD:hhhhhhhh####ffffffpppppppffffff333hhhhhhhh:::::::::dddd!!bb[dddd[eeeee!!dddd[bbdddd[bbqqqqqqqqbb]dddd]bb]dddd55555eeeeedddd]bb]dddd:EEEEEYYFFFFFF@@@@@@@@@@DDDDYYCCC~~~~DDDDBBBB::::::::::::::::::::	chr7:30065887-30066276(-)$1	389	1	388	483.5000

#DB
((((.....))))........((((((((((((..........)))))))............(((((((.............(((.......)))...(((((..((((.((......)))))))))))....(((((.......(((.(((((((((.(((((.......((.(((((.((....)))))))))......)))))..)))..................((((.....))))................((((.......))))........)))))).))).((((((((.((((((((((((((.(((((.((...)).))))).))))))))((((((......))).))).))).)))))))))))..))))).	chr17:34851853-34852263(-)$1	1	3	390	483.5000
(.((.((((....(((.((((........((((((..(((((((((..(((..(((.((.((((((((((((((((((...)))).........(((((.(((((((....((.((((....)))).)).....)))))))))))).......)))))).....))))).))).)).))))))...)))).((((((((....((((((.......))))))...)))))))).........((((..((.((((.(((((..((((.((((((.((........)).)))).)).)))).....))))))))).)).)))).)))))..))))))..........))))..)))....))))))))....................	chr7:30065887-30066276(-)$1	1	1	388	483.5000

#PSSM
U : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	

#score	967.0
#seq	2
#width	387
#escape	false
#onStep	14925
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_UTR_m2_run1.nuc.txt

#NT
GGC	chr1:1372652-1372900(+)$1	248	13	16	9.0000
GGC	chr3:145878571-145878856(-)$1	285	28	31	9.0000
GGC	chr22:36661245-36661483(+)$1	238	22	25	9.0000
GGC	chr17:42942252-42942534(-)$1	282	60	63	9.0000
GGC	chr6:31624171-31624411(+)$1	240	118	121	9.0000
GGC	chr6:31913794-31914034(+)$1	240	12	15	9.0000
GGC	chr11:85779715-85779999(-)$1	284	22	25	9.0000
GGC	chr6:41704471-41704727(-)$1	256	39	42	9.0000
GGC	chr17:76167775-76168022(+)$1	247	52	55	9.0000
GGC	chr17:26646169-26646487(+)$1	318	3	6	9.0000
GGC	chr15:73994484-73994840(+)$1	356	20	23	9.0000
GGC	chr11:62398425-62398649(-)$1	224	27	30	9.0000
GGC	chr17:6915894-6916172(+)$1	278	4	7	9.0000
GGC	chr3:50396539-50396776(-)$1	237	4	7	9.0000
GGC	chr7:43908806-43909076(-)$1	270	13	16	9.0000
GGC	chr16:2569482-2569755(+)$1	273	20	23	9.0000
GGC	chr14:21167671-21167906(+)$1	235	0	3	9.0000
GGC	chr9:110045502-110045772(+)$1	270	8	11	9.0000
GGC	chr15:64448036-64448309(-)$1	273	43	46	9.0000
GGC	chr17:42427976-42428226(+)$1	250	4	7	9.0000
GGC	chr17:79918763-79919052(-)$1	289	39	42	9.0000
GGC	chr7:94285746-94285991(+)$1	245	19	22	9.0000
GGC	chr2:74689873-74690126(-)$1	253	73	76	9.0000
GGC	chr6:13615583-13615840(+)$1	257	3	6	9.0000
GGC	chr3:133495836-133496054(+)$1	218	89	92	9.0000
GGC	chr14:31676692-31676956(-)$1	264	48	51	9.0000
GGC	chr9:35072417-35072683(-)$1	266	1	4	9.0000
GGC	chr12:112451147-112451487(+)$1	340	72	75	9.0000
GGC	chr8:98863605-98863847(+)$1	242	108	111	9.0000
GGC	chr11:61113781-61114048(+)$1	267	61	64	9.0000
GGC	chrX:128657203-128657456(-)$1	253	106	109	9.0000
GGC	chr1:40542413-40542663(-)$1	250	24	27	9.0000
GGC	chr19:14674526-14674799(+)$1	273	8	11	9.0000
GGC	chr1:32801691-32801923(-)$1	232	15	18	9.0000
GGC	chr15:72498979-72499210(-)$1	231	27	30	9.0000
GGC	chr2:219677579-219677832(+)$1	253	1	4	9.0000
GGC	chr6:117996599-117996868(+)$1	269	12	15	9.0000
GGC	chr15:44053532-44053779(+)$1	247	117	120	9.0000
GGC	chr2:231738030-231738264(+)$1	234	170	173	9.0000
GGC	chr13:24189905-24190245(+)$1	340	106	109	9.0000
GGC	chr11:75279703-75279958(+)$1	255	3	6	9.0000
GGC	chr17:79813229-79813478(-)$1	249	18	21	9.0000
GGC	chr6:31896507-31896775(+)$1	268	36	39	9.0000
GGC	chr9:19126294-19126535(-)$1	241	113	116	9.0000
GGC	chr17:7077645-7077874(-)$1	229	20	23	9.0000
GGC	chr12:6645751-6645998(+)$1	247	56	59	9.0000
GGC	chr19:8367194-8367452(-)$1	258	11	14	9.0000
GGC	chr6:144416226-144416476(-)$1	250	129	132	9.0000
GGC	chr14:95090024-95090285(+)$1	261	44	47	9.0000
GGC	chr3:52027753-52028065(-)$1	312	9	12	9.0000
GGC	chr17:49238420-49238723(+)$1	303	5	8	9.0000
GGC	chr1:211751849-211752146(-)$1	297	8	11	9.0000
GGC	chr19:2269473-2269739(+)$1	266	0	3	9.0000
GGC	chr7:100856287-100856525(-)$1	238	22	25	9.0000
GGC	chr19:49506444-49506693(+)$1	249	142	145	9.0000
GGC	chr16:2569443-2569682(+)$1	239	11	14	9.0000
GGC	chr17:79478010-79478233(-)$1	223	84	87	9.0000
GGC	chr11:61094147-61094382(-)$1	235	27	30	9.0000
GGC	chr7:45928144-45928407(+)$1	263	10	13	9.0000
GGC	chr2:219677635-219677913(+)$1	278	60	63	9.0000
GGC	chr6:44224433-44224697(-)$1	264	29	32	9.0000
GGC	chr9:124074651-124074867(+)$1	216	15	18	9.0000
GGC	chr17:80193773-80194052(+)$1	279	29	32	9.0000
GGC	chr5:137089659-137089899(-)$1	240	24	27	9.0000
GGC	chr7:56087236-56087506(-)$1	270	11	14	9.0000
GGC	chr12:110719092-110719359(+)$1	267	34	37	9.0000
GGC	chr2:216300433-216300666(-)$1	233	10	13	9.0000
GGC	chr5:132202456-132202683(+)$1	227	13	16	9.0000
GGC	chr1:1167173-1167446(-)$1	273	29	32	9.0000
GGC	chr20:17608048-17608297(-)$1	249	32	35	9.0000
GGC	chr3:53274182-53274463(-)$1	281	5	8	9.0000
GGC	chr19:36149458-36149724(+)$1	266	60	63	9.0000
ggc	chr10:98346486-98346726(-)$1	240	0	3	9.0000
GGC	chr5:180670702-180670959(-)$1	257	35	38	9.0000
GGC	chr20:30795608-30795870(+)$1	262	13	16	9.0000
GGC	chr11:61605179-61605459(+)$1	280	13	16	9.0000
GGC	chr12:56708570-56708848(-)$1	278	105	108	9.0000
GGC	chr10:88854284-88854548(-)$1	264	18	21	9.0000
GGC	chr2:219144721-219144950(-)$1	229	2	5	9.0000
GGC	chr4:155487558-155487797(+)$1	239	117	120	9.0000
GGC	chr17:26694736-26695026(-)$1	290	16	19	9.0000
ggc	chr19:991918-992224(+)$1	306	8	11	9.0000
GGC	chr17:42091734-42091983(-)$1	249	69	72	9.0000
GGC	chr19:42372997-42373288(+)$1	291	115	118	9.0000
GGC	chr22:39151696-39151963(-)$1	267	5	8	9.0000
ggc	chr9:74383176-74383504(-)$1	328	1	4	9.0000
GGC	chr1:1374637-1374930(+)$1	293	1	4	9.0000
GGC	chr1:55518256-55518518(+)$1	262	65	68	9.0000
GGC	chrX:105969951-105970278(+)$1	327	21	24	9.0000
GGC	chr7:75615669-75615928(+)$1	259	0	3	9.0000
GGC	chr17:79268861-79269128(-)$1	267	18	21	9.0000
GGC	chr2:20403908-20404113(-)$1	205	128	131	9.0000
GGC	chr6:29798081-29798288(+)$1	207	98	101	9.0000
GGC	chr19:47712366-47712692(+)$1	326	97	100	9.0000
GGC	chr3:53264449-53264737(-)$1	288	122	125	9.0000
GGC	chr19:54704629-54704857(+)$1	228	17	20	9.0000
GGC	chr2:85824126-85824369(+)$1	243	21	24	9.0000
GGC	chr11:27494093-27494395(-)$1	302	39	42	9.0000
ggc	chr19:11561361-11561570(+)$1	209	38	41	9.0000

#otherMatches

#Struct PSSM
eee	chr11:118922701-118922972(-)$1	271	6	9	9.0000
JJJ	chr1:1372652-1372900(+)$1	248	13	16	9.0000
CC{	chr3:145878571-145878856(-)$1	285	28	31	9.0000
eee	chr22:36661245-36661483(+)$1	238	22	25	9.0000
d[b	chr17:42942252-42942534(-)$1	282	60	63	9.0000
FFF	chr6:31624171-31624411(+)$1	240	118	121	9.0000
GGG	chr6:31913794-31914034(+)$1	240	12	15	9.0000
EEE	chr11:85779715-85779999(-)$1	284	22	25	9.0000
bbo	chr6:41704471-41704727(-)$1	256	39	42	9.0000
ddd	chr17:76167775-76168022(+)$1	247	52	55	9.0000
EEE	chr17:26646169-26646487(+)$1	318	3	6	9.0000
fff	chr15:73994484-73994840(+)$1	356	20	23	9.0000
ee"	chr11:62398425-62398649(-)$1	224	27	30	9.0000
:CC	chr17:6915894-6916172(+)$1	278	4	7	9.0000
ooo	chr3:50396539-50396776(-)$1	237	4	7	9.0000
EEE	chr7:43908806-43909076(-)$1	270	13	16	9.0000
G{I	chr16:2569482-2569755(+)$1	273	20	23	9.0000
CCC	chr14:21167671-21167906(+)$1	235	0	3	9.0000
EEE	chr9:110045502-110045772(+)$1	270	8	11	9.0000
bbb	chr15:64448036-64448309(-)$1	273	43	46	9.0000
EEE	chr17:42427976-42428226(+)$1	250	4	7	9.0000
ccc	chr17:79918763-79919052(-)$1	289	39	42	9.0000
ddd	chr7:94285746-94285991(+)$1	245	19	22	9.0000
eee	chr2:74689873-74690126(-)$1	253	73	76	9.0000
:CC	chr6:13615583-13615840(+)$1	257	3	6	9.0000
ggg	chr3:133495836-133496054(+)$1	218	89	92	9.0000
ccm	chr14:31676692-31676956(-)$1	264	48	51	9.0000
:::	chr9:35072417-35072683(-)$1	266	1	4	9.0000
fff	chr12:112451147-112451487(+)$1	340	72	75	9.0000
eee	chr8:98863605-98863847(+)$1	242	108	111	9.0000
III	chr11:61113781-61114048(+)$1	267	61	64	9.0000
qqq	chrX:128657203-128657456(-)$1	253	106	109	9.0000
GGG	chr1:40542413-40542663(-)$1	250	24	27	9.0000
GGG	chr19:14674526-14674799(+)$1	273	8	11	9.0000
cce	chr1:32801691-32801923(-)$1	232	15	18	9.0000
fff	chr15:72498979-72499210(-)$1	231	27	30	9.0000
:::	chr2:219677579-219677832(+)$1	253	1	4	9.0000
JJJ	chr6:117996599-117996868(+)$1	269	12	15	9.0000
ccc	chr15:44053532-44053779(+)$1	247	117	120	9.0000
ddd	chr2:231738030-231738264(+)$1	234	170	173	9.0000
ee4	chr13:24189905-24190245(+)$1	340	106	109	9.0000
hhh	chr11:75279703-75279958(+)$1	255	3	6	9.0000
KEE	chr17:79813229-79813478(-)$1	249	18	21	9.0000
:::	chr6:31896507-31896775(+)$1	268	36	39	9.0000
>>>	chr9:19126294-19126535(-)$1	241	113	116	9.0000
fff	chr17:7077645-7077874(-)$1	229	20	23	9.0000
CC{	chr12:6645751-6645998(+)$1	247	56	59	9.0000
DDD	chr19:8367194-8367452(-)$1	258	11	14	9.0000
fff	chr6:144416226-144416476(-)$1	250	129	132	9.0000
ccn	chr14:95090024-95090285(+)$1	261	44	47	9.0000
CCC	chr3:52027753-52028065(-)$1	312	9	12	9.0000
ccc	chr17:49238420-49238723(+)$1	303	5	8	9.0000
ggg	chr1:211751849-211752146(-)$1	297	8	11	9.0000
CCC	chr19:2269473-2269739(+)$1	266	0	3	9.0000
DDD	chr7:100856287-100856525(-)$1	238	22	25	9.0000
[bb	chr19:49506444-49506693(+)$1	249	142	145	9.0000
!!c	chr16:2569443-2569682(+)$1	239	11	14	9.0000
qqq	chr17:79478010-79478233(-)$1	223	84	87	9.0000
fff	chr11:61094147-61094382(-)$1	235	27	30	9.0000
eee	chr7:45928144-45928407(+)$1	263	10	13	9.0000
ccc	chr2:219677635-219677913(+)$1	278	60	63	9.0000
===	chr6:44224433-44224697(-)$1	264	29	32	9.0000
fff	chr9:124074651-124074867(+)$1	216	15	18	9.0000
hhh	chr17:80193773-80194052(+)$1	279	29	32	9.0000
hhh	chr5:137089659-137089899(-)$1	240	24	27	9.0000
!ee	chr7:56087236-56087506(-)$1	270	11	14	9.0000
lcc	chr12:110719092-110719359(+)$1	267	34	37	9.0000
{BB	chr2:216300433-216300666(-)$1	233	10	13	9.0000
CFF	chr5:132202456-132202683(+)$1	227	13	16	9.0000
HHH	chr1:1167173-1167446(-)$1	273	29	32	9.0000
]ff	chr20:17608048-17608297(-)$1	249	32	35	9.0000
DDD	chr3:53274182-53274463(-)$1	281	5	8	9.0000
[cc	chr19:36149458-36149724(+)$1	266	60	63	9.0000
A{E	chr10:98346486-98346726(-)$1	240	0	3	9.0000
NFF	chr5:180670702-180670959(-)$1	257	35	38	9.0000
DDD	chr20:30795608-30795870(+)$1	262	13	16	9.0000
FFF	chr11:61605179-61605459(+)$1	280	13	16	9.0000
lbb	chr12:56708570-56708848(-)$1	278	105	108	9.0000
eee	chr10:88854284-88854548(-)$1	264	18	21	9.0000
ccc	chr2:219144721-219144950(-)$1	229	2	5	9.0000
fff	chr4:155487558-155487797(+)$1	239	117	120	9.0000
III	chr17:26694736-26695026(-)$1	290	16	19	9.0000
ddd	chr19:991918-992224(+)$1	306	8	11	9.0000
cc"	chr17:42091734-42091983(-)$1	249	69	72	9.0000
[bb	chr19:42372997-42373288(+)$1	291	115	118	9.0000
FFF	chr22:39151696-39151963(-)$1	267	5	8	9.0000
CC{	chr9:74383176-74383504(-)$1	328	1	4	9.0000
JJJ	chr1:1374637-1374930(+)$1	293	1	4	9.0000
{BB	chr1:55518256-55518518(+)$1	262	65	68	9.0000
eee	chrX:105969951-105970278(+)$1	327	21	24	9.0000
eee	chr7:75615669-75615928(+)$1	259	0	3	9.0000
EEE	chr17:79268861-79269128(-)$1	267	18	21	9.0000
dss	chr2:20403908-20404113(-)$1	205	128	131	9.0000
[cc	chr6:29798081-29798288(+)$1	207	98	101	9.0000
DDL	chr19:47712366-47712692(+)$1	326	97	100	9.0000
ddd	chr3:53264449-53264737(-)$1	288	122	125	9.0000
ccc	chr19:54704629-54704857(+)$1	228	17	20	9.0000
ggg	chr2:85824126-85824369(+)$1	243	21	24	9.0000
fff	chr11:27494093-27494395(-)$1	302	39	42	9.0000
III	chr19:11561361-11561570(+)$1	209	38	41	9.0000

#DB
(((	chr11:118922701-118922972(-)$1	1	6	9	9.0000
(((	chr1:1372652-1372900(+)$1	1	13	16	9.0000
((.	chr3:145878571-145878856(-)$1	1	28	31	9.0000
(((	chr22:36661245-36661483(+)$1	1	22	25	9.0000
(.(	chr17:42942252-42942534(-)$1	1	60	63	9.0000
(((	chr6:31624171-31624411(+)$1	1	118	121	9.0000
(((	chr6:31913794-31914034(+)$1	1	12	15	9.0000
(((	chr11:85779715-85779999(-)$1	1	22	25	9.0000
((.	chr6:41704471-41704727(-)$1	1	39	42	9.0000
(((	chr17:76167775-76168022(+)$1	1	52	55	9.0000
(((	chr17:26646169-26646487(+)$1	1	3	6	9.0000
(((	chr15:73994484-73994840(+)$1	1	20	23	9.0000
((.	chr11:62398425-62398649(-)$1	1	27	30	9.0000
.((	chr17:6915894-6916172(+)$1	1	4	7	9.0000
...	chr3:50396539-50396776(-)$1	1	4	7	9.0000
(((	chr7:43908806-43909076(-)$1	1	13	16	9.0000
(.(	chr16:2569482-2569755(+)$1	1	20	23	9.0000
(((	chr14:21167671-21167906(+)$1	1	0	3	9.0000
(((	chr9:110045502-110045772(+)$1	1	8	11	9.0000
(((	chr15:64448036-64448309(-)$1	1	43	46	9.0000
(((	chr17:42427976-42428226(+)$1	1	4	7	9.0000
(((	chr17:79918763-79919052(-)$1	1	39	42	9.0000
(((	chr7:94285746-94285991(+)$1	1	19	22	9.0000
(((	chr2:74689873-74690126(-)$1	1	73	76	9.0000
.((	chr6:13615583-13615840(+)$1	1	3	6	9.0000
(((	chr3:133495836-133496054(+)$1	1	89	92	9.0000
((.	chr14:31676692-31676956(-)$1	1	48	51	9.0000
...	chr9:35072417-35072683(-)$1	1	1	4	9.0000
)))	chr12:112451147-112451487(+)$1	1	72	75	9.0000
)))	chr8:98863605-98863847(+)$1	1	108	111	9.0000
(((	chr11:61113781-61114048(+)$1	1	61	64	9.0000
...	chrX:128657203-128657456(-)$1	1	106	109	9.0000
(((	chr1:40542413-40542663(-)$1	1	24	27	9.0000
(((	chr19:14674526-14674799(+)$1	1	8	11	9.0000
))(	chr1:32801691-32801923(-)$1	1	15	18	9.0000
(((	chr15:72498979-72499210(-)$1	1	27	30	9.0000
...	chr2:219677579-219677832(+)$1	1	1	4	9.0000
(((	chr6:117996599-117996868(+)$1	1	12	15	9.0000
)))	chr15:44053532-44053779(+)$1	1	117	120	9.0000
)))	chr2:231738030-231738264(+)$1	1	170	173	9.0000
)).	chr13:24189905-24190245(+)$1	1	106	109	9.0000
(((	chr11:75279703-75279958(+)$1	1	3	6	9.0000
.((	chr17:79813229-79813478(-)$1	1	18	21	9.0000
...	chr6:31896507-31896775(+)$1	1	36	39	9.0000
...	chr9:19126294-19126535(-)$1	1	113	116	9.0000
(((	chr17:7077645-7077874(-)$1	1	20	23	9.0000
((.	chr12:6645751-6645998(+)$1	1	56	59	9.0000
(((	chr19:8367194-8367452(-)$1	1	11	14	9.0000
)))	chr6:144416226-144416476(-)$1	1	129	132	9.0000
((.	chr14:95090024-95090285(+)$1	1	44	47	9.0000
(((	chr3:52027753-52028065(-)$1	1	9	12	9.0000
(((	chr17:49238420-49238723(+)$1	1	5	8	9.0000
(((	chr1:211751849-211752146(-)$1	1	8	11	9.0000
(((	chr19:2269473-2269739(+)$1	1	0	3	9.0000
(((	chr7:100856287-100856525(-)$1	1	22	25	9.0000
.((	chr19:49506444-49506693(+)$1	1	142	145	9.0000
..(	chr16:2569443-2569682(+)$1	1	11	14	9.0000
...	chr17:79478010-79478233(-)$1	1	84	87	9.0000
(((	chr11:61094147-61094382(-)$1	1	27	30	9.0000
(((	chr7:45928144-45928407(+)$1	1	10	13	9.0000
)))	chr2:219677635-219677913(+)$1	1	60	63	9.0000
(((	chr6:44224433-44224697(-)$1	1	29	32	9.0000
(((	chr9:124074651-124074867(+)$1	1	15	18	9.0000
(((	chr17:80193773-80194052(+)$1	1	29	32	9.0000
)))	chr5:137089659-137089899(-)$1	1	24	27	9.0000
.((	chr7:56087236-56087506(-)$1	1	11	14	9.0000
.))	chr12:110719092-110719359(+)$1	1	34	37	9.0000
.((	chr2:216300433-216300666(-)$1	1	10	13	9.0000
(((	chr5:132202456-132202683(+)$1	1	13	16	9.0000
(((	chr1:1167173-1167446(-)$1	1	29	32	9.0000
.))	chr20:17608048-17608297(-)$1	1	32	35	9.0000
(((	chr3:53274182-53274463(-)$1	1	5	8	9.0000
.((	chr19:36149458-36149724(+)$1	1	60	63	9.0000
(.(	chr10:98346486-98346726(-)$1	1	0	3	9.0000
.((	chr5:180670702-180670959(-)$1	1	35	38	9.0000
(((	chr20:30795608-30795870(+)$1	1	13	16	9.0000
(((	chr11:61605179-61605459(+)$1	1	13	16	9.0000
.))	chr12:56708570-56708848(-)$1	1	105	108	9.0000
(((	chr10:88854284-88854548(-)$1	1	18	21	9.0000
(((	chr2:219144721-219144950(-)$1	1	2	5	9.0000
(((	chr4:155487558-155487797(+)$1	1	117	120	9.0000
(((	chr17:26694736-26695026(-)$1	1	16	19	9.0000
(((	chr19:991918-992224(+)$1	1	8	11	9.0000
((.	chr17:42091734-42091983(-)$1	1	69	72	9.0000
.((	chr19:42372997-42373288(+)$1	1	115	118	9.0000
(((	chr22:39151696-39151963(-)$1	1	5	8	9.0000
((.	chr9:74383176-74383504(-)$1	1	1	4	9.0000
(((	chr1:1374637-1374930(+)$1	1	1	4	9.0000
.((	chr1:55518256-55518518(+)$1	1	65	68	9.0000
(((	chrX:105969951-105970278(+)$1	1	21	24	9.0000
(((	chr7:75615669-75615928(+)$1	1	0	3	9.0000
(((	chr17:79268861-79269128(-)$1	1	18	21	9.0000
(..	chr2:20403908-20404113(-)$1	1	128	131	9.0000
.((	chr6:29798081-29798288(+)$1	1	98	101	9.0000
((.	chr19:47712366-47712692(+)$1	1	97	100	9.0000
)))	chr3:53264449-53264737(-)$1	1	122	125	9.0000
)))	chr19:54704629-54704857(+)$1	1	17	20	9.0000
(((	chr2:85824126-85824369(+)$1	1	21	24	9.0000
(((	chr11:27494093-27494395(-)$1	1	39	42	9.0000
(((	chr19:11561361-11561570(+)$1	1	38	41	9.0000

#PSSM
G : 0.96	g : 0.04	
G : 0.96	g : 0.04	
C : 0.96	c : 0.04	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_CDS_m3_run2.nuc.txt

#NT
GGAG	chr2:232326150-232326383(-)$1	233	137	141	11.9999
GGAG	chr10:120809210-120809438(-)$1	228	2	6	11.9999
GGAG	chr20:61458025-61458259(+)$1	234	26	30	11.9999
GGAG	chr12:56510448-56510689(+)$1	241	161	165	11.9999
ggag	chr7:134632375-134632621(+)$1	246	27	31	11.9999
GGAG	chr12:121416352-121416650(+)$1	298	113	117	11.9999
GGAG	chr21:46908232-46908458(+)$1	226	195	199	11.9999
GGAG	chr2:242755743-242756064(+)$1	321	57	61	11.9999
GGAG	chr3:47676577-47676846(-)$1	269	19	23	11.9999
GGAG	chr14:31637452-31637713(-)$1	261	61	65	11.9999
ggag	chr7:2697819-2698026(+)$1	207	5	9	11.9999
ggag	chr19:39138221-39138557(+)$1	336	55	59	11.9999
GGAG	chr10:120809328-120809600(-)$1	272	69	73	11.9999
GGAG	chr9:117063626-117063842(+)$1	216	20	24	11.9999
GGAG	chr3:184040252-184040524(+)$1	272	4	8	11.9999
GGAG	chr8:126010697-126010976(+)$1	279	58	62	11.9999
GGAG	chr10:102107845-102108105(+)$1	260	38	42	11.9999
GGAG	chr2:11484087-11484356(-)$1	269	7	11	11.9999
GGAG	chr22:36681670-36681911(-)$1	241	99	103	11.9999
GGAG	chr2:220408150-220408414(-)$1	264	26	30	11.9999
GGAG	chr7:98997868-98998148(-)$1	280	37	41	11.9999
GGAG	chr9:117054291-117054584(+)$1	293	174	178	11.9999
GGAG	chr2:101869402-101869713(+)$1	311	12	16	11.9999
GGAG	chr9:131590918-131591210(-)$1	292	78	82	11.9999
GGAG	chr9:117052246-117052491(+)$1	245	131	135	11.9999
GGAG	chr20:278121-278416(+)$1	295	73	77	11.9999
GGAG	chr19:1020848-1021214(-)$1	366	121	125	11.9999
GGAG	chr1:11986024-11986295(-)$1	271	198	202	11.9999
GGAG	chr17:36868855-36869144(+)$1	289	206	210	11.9999
GGAG	chr19:932542-932796(+)$1	254	91	95	11.9999
GGAG	chr19:51850109-51850414(-)$1	305	128	132	11.9999
GGAG	chr9:127998786-127999066(-)$1	280	3	7	11.9999
GGAG	chr1:245019703-245019981(-)$1	278	79	83	11.9999
GGAG	chr6:158402917-158403199(+)$1	282	5	9	11.9999
GGAG	chr22:36685224-36685444(-)$1	220	27	31	11.9999
GGAG	chr6:168352705-168352970(+)$1	265	5	9	11.9999
GGAG	chr1:146756899-146757194(+)$1	295	55	59	11.9999
GGAG	chr17:1268123-1268451(-)$1	328	106	110	11.9999
GGAG	chr19:2112752-2113027(-)$1	275	8	12	11.9999
GGAG	chr1:156713841-156714162(-)$1	321	156	160	11.9999
GGAG	chr22:29279647-29279951(+)$1	304	274	278	11.9999
GGAG	chr20:306478-306743(+)$1	265	38	42	11.9999
GGAG	chr7:148709298-148709552(-)$1	254	10	14	11.9999
GGAG	chr20:32693084-32693384(-)$1	300	149	153	11.9999
GGAG	chr16:88789562-88789825(-)$1	263	54	58	11.9999
GGAG	chr22:36681610-36681839(-)$1	229	27	31	11.9999
GGAG	chr9:117063866-117064090(+)$1	224	24	28	11.9999
GGAG	chr17:79603841-79604146(-)$1	305	3	7	11.9999
ggAG	chr14:23790895-23791131(+)$1	236	26	30	11.9999
GGAG	chr16:24741065-24741276(+)$1	211	35	39	11.9999
GGAG	chr12:131356993-131357253(+)$1	260	29	33	11.9999
GGAG	chr19:18391596-18391878(-)$1	282	15	19	11.9999
ggag	chr6:7910856-7911123(-)$1	267	18	22	11.9999
GGAG	chr9:139734512-139734761(+)$1	249	97	101	11.9999
GGAG	chr9:117051437-117051662(+)$1	225	16	20	11.9999
GGAG	chr2:232577051-232577316(+)$1	265	49	53	11.9999
GGAG	chr2:54856094-54856353(+)$1	259	24	28	11.9999
GGAG	chr19:55628673-55629013(-)$1	340	108	112	11.9999
GGAG	chr2:75061566-75061824(+)$1	258	176	180	11.9999
GGAG	chr20:61461017-61461270(+)$1	253	100	104	11.9999
GGAG	chr21:34143592-34143958(-)$1	366	53	57	11.9999
GGAG	chrX:70517182-70517411(+)$1	229	71	75	11.9999
GGAG	chr8:98787972-98788273(+)$1	301	70	74	11.9999
GGAG	chr10:95360612-95360897(-)$1	285	75	79	11.9999
ggag	chr19:49458057-49458391(+)$1	334	116	120	11.9999
GGAG	chr14:102550978-102551323(-)$1	345	245	249	11.9999
GGAG	chr3:128341010-128341327(-)$1	317	10	14	11.9999
GGAG	chr16:448868-449139(+)$1	271	120	124	11.9999
GGAG	chr4:3519732-3520014(-)$1	282	168	172	11.9999
GGAG	chr22:36682655-36682891(-)$1	236	52	56	11.9999
GGAG	chr20:2638654-2638993(+)$1	339	42	46	11.9999
GGAG	chr6:30545762-30546056(+)$1	294	147	151	11.9999
GGAG	chr12:104332128-104332336(+)$1	208	3	7	11.9999
GGAG	chr2:231902347-231902591(+)$1	244	52	56	11.9999
GGAG	chr9:127998866-127999181(-)$1	315	13	17	11.9999
GGAG	chr9:117062253-117062502(+)$1	249	3	7	11.9999
GGAG	chr17:39845204-39845466(+)$1	262	172	176	11.9999
GGAG	chr17:37054565-37054878(+)$1	313	110	114	11.9999
GGAG	chr4:6642561-6642843(+)$1	282	63	67	11.9999
GGAG	chr20:40141384-40141687(-)$1	303	149	153	11.9999
GGAG	chr21:46907290-46907520(+)$1	230	10	14	11.9999
GGAG	chr2:232576572-232576794(+)$1	222	23	27	11.9999
GGAG	chr12:7024844-7025099(+)$1	255	136	140	11.9999
GGAG	chr19:13054508-13054877(+)$1	369	53	57	11.9999
GGAG	chr7:99621088-99621374(+)$1	286	32	36	11.9999
ggag	chr12:124886849-124887105(-)$1	256	66	70	11.9999
GGAG	chr10:120802086-120802385(-)$1	299	101	105	11.9999

#otherMatches

#Struct PSSM
qqbb	chr8:48715834-48716141(-)$1	307	132	136	11.9999
555h	chr2:232326150-232326383(-)$1	233	137	141	11.9999
CMMM	chr10:120809210-120809438(-)$1	228	2	6	11.9999
dddd	chr20:61458025-61458259(+)$1	234	26	30	11.9999
====	chr12:56510448-56510689(+)$1	241	161	165	11.9999
ELLL	chr7:134632375-134632621(+)$1	246	27	31	11.9999
HHHH	chr12:121416352-121416650(+)$1	298	113	117	11.9999
JJJJ	chr21:46908232-46908458(+)$1	226	195	199	11.9999
ffff	chr2:242755743-242756064(+)$1	321	57	61	11.9999
uuuu	chr3:47676577-47676846(-)$1	269	19	23	11.9999
ccc]	chr14:31637452-31637713(-)$1	261	61	65	11.9999
DDcc	chr7:2697819-2698026(+)$1	207	5	9	11.9999
$$$$	chr19:39138221-39138557(+)$1	336	55	59	11.9999
ffpp	chr10:120809328-120809600(-)$1	272	69	73	11.9999
JJJJ	chr9:117063626-117063842(+)$1	216	20	24	11.9999
c!!a	chr3:184040252-184040524(+)$1	272	4	8	11.9999
ccc]	chr8:126010697-126010976(+)$1	279	58	62	11.9999
e!!a	chr10:102107845-102108105(+)$1	260	38	42	11.9999
QQQQ	chr2:11484087-11484356(-)$1	269	7	11	11.9999
GGGG	chr22:36681670-36681911(-)$1	241	99	103	11.9999
ffff	chr2:220408150-220408414(-)$1	264	26	30	11.9999
dd[c	chr7:98997868-98998148(-)$1	280	37	41	11.9999
hh:G	chr9:117054291-117054584(+)$1	293	174	178	11.9999
BB:b	chr2:101869402-101869713(+)$1	311	12	16	11.9999
:ddd	chr9:131590918-131591210(-)$1	292	78	82	11.9999
bb[g	chr9:117052246-117052491(+)$1	245	131	135	11.9999
a"""	chr20:278121-278416(+)$1	295	73	77	11.9999
mmmd	chr19:1020848-1021214(-)$1	366	121	125	11.9999
bbgg	chr1:11986024-11986295(-)$1	271	198	202	11.9999
d]aC	chr17:36868855-36869144(+)$1	289	206	210	11.9999
JJJJ	chr19:932542-932796(+)$1	254	91	95	11.9999
dd]g	chr19:51850109-51850414(-)$1	305	128	132	11.9999
:EEE	chr9:127998786-127999066(-)$1	280	3	7	11.9999
GGGG	chr1:245019703-245019981(-)$1	278	79	83	11.9999
e[bb	chr6:158402917-158403199(+)$1	282	5	9	11.9999
eedd	chr22:36685224-36685444(-)$1	220	27	31	11.9999
::::	chr6:168352705-168352970(+)$1	265	5	9	11.9999
hhhh	chr1:146756899-146757194(+)$1	295	55	59	11.9999
gggg	chr17:1268123-1268451(-)$1	328	106	110	11.9999
:::G	chr19:2112752-2113027(-)$1	275	8	12	11.9999
::::	chr1:156713841-156714162(-)$1	321	156	160	11.9999
bb::	chr22:29279647-29279951(+)$1	304	274	278	11.9999
cc[b	chr20:306478-306743(+)$1	265	38	42	11.9999
DDDB	chr7:148709298-148709552(-)$1	254	10	14	11.9999
bbqq	chr20:32693084-32693384(-)$1	300	149	153	11.9999
hh]b	chr16:88789562-88789825(-)$1	263	54	58	11.9999
cc::	chr22:36681610-36681839(-)$1	229	27	31	11.9999
ffff	chr9:117063866-117064090(+)$1	224	24	28	11.9999
:::b	chr17:79603841-79604146(-)$1	305	3	7	11.9999
LLLB	chr14:23790895-23791131(+)$1	236	26	30	11.9999
ee]c	chr16:24741065-24741276(+)$1	211	35	39	11.9999
###a	chr12:131356993-131357253(+)$1	260	29	33	11.9999
EE{B	chr19:18391596-18391878(-)$1	282	15	19	11.9999
BB{E	chr6:7910856-7911123(-)$1	267	18	22	11.9999
ccbb	chr9:139734512-139734761(+)$1	249	97	101	11.9999
qqqq	chr9:117051437-117051662(+)$1	225	16	20	11.9999
eegg	chr2:232577051-232577316(+)$1	265	49	53	11.9999
hhhh	chr2:54856094-54856353(+)$1	259	24	28	11.9999
nnnn	chr19:55628673-55629013(-)$1	340	108	112	11.9999
"""a	chr2:75061566-75061824(+)$1	258	176	180	11.9999
ffff	chr20:61461017-61461270(+)$1	253	100	104	11.9999
::::	chr21:34143592-34143958(-)$1	366	53	57	11.9999
ccdd	chrX:70517182-70517411(+)$1	229	71	75	11.9999
flll	chr8:98787972-98788273(+)$1	301	70	74	11.9999
cc]c	chr10:95360612-95360897(-)$1	285	75	79	11.9999
mmmb	chr19:49458057-49458391(+)$1	334	116	120	11.9999
333b	chr14:102550978-102551323(-)$1	345	245	249	11.9999
ccc]	chr3:128341010-128341327(-)$1	317	10	14	11.9999
ffff	chr16:448868-449139(+)$1	271	120	124	11.9999
JJJJ	chr4:3519732-3520014(-)$1	282	168	172	11.9999
ccmm	chr22:36682655-36682891(-)$1	236	52	56	11.9999
bb]d	chr20:2638654-2638993(+)$1	339	42	46	11.9999
GGGG	chr6:30545762-30546056(+)$1	294	147	151	11.9999
CCLL	chr12:104332128-104332336(+)$1	208	3	7	11.9999
bb[e	chr2:231902347-231902591(+)$1	244	52	56	11.9999
lddd	chr9:127998866-127999181(-)$1	315	13	17	11.9999
FFFd	chr9:117062253-117062502(+)$1	249	3	7	11.9999
====	chr17:39845204-39845466(+)$1	262	172	176	11.9999
cc]d	chr17:37054565-37054878(+)$1	313	110	114	11.9999
h]aB	chr4:6642561-6642843(+)$1	282	63	67	11.9999
c333	chr20:40141384-40141687(-)$1	303	149	153	11.9999
EEee	chr21:46907290-46907520(+)$1	230	10	14	11.9999
pppp	chr2:232576572-232576794(+)$1	222	23	27	11.9999
gggg	chr12:7024844-7025099(+)$1	255	136	140	11.9999
:ddd	chr19:13054508-13054877(+)$1	369	53	57	11.9999
KKDD	chr7:99621088-99621374(+)$1	286	32	36	11.9999
mmmb	chr12:124886849-124887105(-)$1	256	66	70	11.9999
&&&b	chr10:120802086-120802385(-)$1	299	101	105	11.9999

#DB
..))	chr8:48715834-48716141(-)$1	1	132	136	11.9999
...)	chr2:232326150-232326383(-)$1	1	137	141	11.9999
(...	chr10:120809210-120809438(-)$1	1	2	6	11.9999
((((	chr20:61458025-61458259(+)$1	1	26	30	11.9999
((((	chr12:56510448-56510689(+)$1	1	161	165	11.9999
(...	chr7:134632375-134632621(+)$1	1	27	31	11.9999
((((	chr12:121416352-121416650(+)$1	1	113	117	11.9999
))))	chr21:46908232-46908458(+)$1	1	195	199	11.9999
((((	chr2:242755743-242756064(+)$1	1	57	61	11.9999
....	chr3:47676577-47676846(-)$1	1	19	23	11.9999
))).	chr14:31637452-31637713(-)$1	1	61	65	11.9999
((((	chr7:2697819-2698026(+)$1	1	5	9	11.9999
....	chr19:39138221-39138557(+)$1	1	55	59	11.9999
((..	chr10:120809328-120809600(-)$1	1	69	73	11.9999
((((	chr9:117063626-117063842(+)$1	1	20	24	11.9999
(..(	chr3:184040252-184040524(+)$1	1	4	8	11.9999
))).	chr8:126010697-126010976(+)$1	1	58	62	11.9999
(..(	chr10:102107845-102108105(+)$1	1	38	42	11.9999
....	chr2:11484087-11484356(-)$1	1	7	11	11.9999
((((	chr22:36681670-36681911(-)$1	1	99	103	11.9999
((((	chr2:220408150-220408414(-)$1	1	26	30	11.9999
((.(	chr7:98997868-98998148(-)$1	1	37	41	11.9999
)).)	chr9:117054291-117054584(+)$1	1	174	178	11.9999
((.(	chr2:101869402-101869713(+)$1	1	12	16	11.9999
.(((	chr9:131590918-131591210(-)$1	1	78	82	11.9999
((.(	chr9:117052246-117052491(+)$1	1	131	135	11.9999
(...	chr20:278121-278416(+)$1	1	73	77	11.9999
...)	chr19:1020848-1021214(-)$1	1	121	125	11.9999
))))	chr1:11986024-11986295(-)$1	1	198	202	11.9999
).))	chr17:36868855-36869144(+)$1	1	206	210	11.9999
((((	chr19:932542-932796(+)$1	1	91	95	11.9999
)).)	chr19:51850109-51850414(-)$1	1	128	132	11.9999
.(((	chr9:127998786-127999066(-)$1	1	3	7	11.9999
((((	chr1:245019703-245019981(-)$1	1	79	83	11.9999
(.((	chr6:158402917-158403199(+)$1	1	5	9	11.9999
((((	chr22:36685224-36685444(-)$1	1	27	31	11.9999
....	chr6:168352705-168352970(+)$1	1	5	9	11.9999
((((	chr1:146756899-146757194(+)$1	1	55	59	11.9999
))))	chr17:1268123-1268451(-)$1	1	106	110	11.9999
...(	chr19:2112752-2113027(-)$1	1	8	12	11.9999
....	chr1:156713841-156714162(-)$1	1	156	160	11.9999
))..	chr22:29279647-29279951(+)$1	1	274	278	11.9999
((.(	chr20:306478-306743(+)$1	1	38	42	11.9999
((((	chr7:148709298-148709552(-)$1	1	10	14	11.9999
((..	chr20:32693084-32693384(-)$1	1	149	153	11.9999
)).)	chr16:88789562-88789825(-)$1	1	54	58	11.9999
))..	chr22:36681610-36681839(-)$1	1	27	31	11.9999
((((	chr9:117063866-117064090(+)$1	1	24	28	11.9999
...(	chr17:79603841-79604146(-)$1	1	3	7	11.9999
...(	chr14:23790895-23791131(+)$1	1	26	30	11.9999
)).)	chr16:24741065-24741276(+)$1	1	35	39	11.9999
...(	chr12:131356993-131357253(+)$1	1	29	33	11.9999
((.(	chr19:18391596-18391878(-)$1	1	15	19	11.9999
((.(	chr6:7910856-7911123(-)$1	1	18	22	11.9999
))))	chr9:139734512-139734761(+)$1	1	97	101	11.9999
....	chr9:117051437-117051662(+)$1	1	16	20	11.9999
((((	chr2:232577051-232577316(+)$1	1	49	53	11.9999
((((	chr2:54856094-54856353(+)$1	1	24	28	11.9999
....	chr19:55628673-55629013(-)$1	1	108	112	11.9999
...(	chr2:75061566-75061824(+)$1	1	176	180	11.9999
))))	chr20:61461017-61461270(+)$1	1	100	104	11.9999
....	chr21:34143592-34143958(-)$1	1	53	57	11.9999
((((	chrX:70517182-70517411(+)$1	1	71	75	11.9999
(...	chr8:98787972-98788273(+)$1	1	70	74	11.9999
)).)	chr10:95360612-95360897(-)$1	1	75	79	11.9999
...)	chr19:49458057-49458391(+)$1	1	116	120	11.9999
...)	chr14:102550978-102551323(-)$1	1	245	249	11.9999
))).	chr3:128341010-128341327(-)$1	1	10	14	11.9999
))))	chr16:448868-449139(+)$1	1	120	124	11.9999
))))	chr4:3519732-3520014(-)$1	1	168	172	11.9999
((..	chr22:36682655-36682891(-)$1	1	52	56	11.9999
)).)	chr20:2638654-2638993(+)$1	1	42	46	11.9999
))))	chr6:30545762-30546056(+)$1	1	147	151	11.9999
((..	chr12:104332128-104332336(+)$1	1	3	7	11.9999
((.(	chr2:231902347-231902591(+)$1	1	52	56	11.9999
.)))	chr9:127998866-127999181(-)$1	1	13	17	11.9999
((((	chr9:117062253-117062502(+)$1	1	3	7	11.9999
((((	chr17:39845204-39845466(+)$1	1	172	176	11.9999
)).)	chr17:37054565-37054878(+)$1	1	110	114	11.9999
).)(	chr4:6642561-6642843(+)$1	1	63	67	11.9999
)...	chr20:40141384-40141687(-)$1	1	149	153	11.9999
((((	chr21:46907290-46907520(+)$1	1	10	14	11.9999
....	chr2:232576572-232576794(+)$1	1	23	27	11.9999
))))	chr12:7024844-7025099(+)$1	1	136	140	11.9999
.(((	chr19:13054508-13054877(+)$1	1	53	57	11.9999
..((	chr7:99621088-99621374(+)$1	1	32	36	11.9999
...)	chr12:124886849-124887105(-)$1	1	66	70	11.9999
...(	chr10:120802086-120802385(-)$1	1	101	105	11.9999

#PSSM
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	
A : 0.93	a : 0.06	
G : 0.93	g : 0.06	

#score	1055.9999999999998
#seq	88
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_CDS_m1_run1.nuc.txt

#NT
CCAAAGGCUCUUUUCAGAGCCACCUA	chr6:27776204-27776455(+)$1	251	215	241	66.3673
CCAACGGCUCUUUUCAGGGCCACCCA	chr6:27101136-27101368(+)$1	232	152	178	61.0612
CCAAAGGCUCUUUUCAGAGCCACCUA	chr6:27776274-27776518(+)$1	244	145	171	66.3673
AAAAAGGUUCUUUUCAGAGCCACCUA	chr6:27805558-27805834(-)$1	276	151	177	55.1428
CAAAAGGCUCUUUUCAGAGCCACCAC	chr6:26055932-26056152(-)$1	220	160	186	60.0408
CCAACGGCUCUUUUCAGGGCCACCCA	chr6:27101102-27101336(+)$1	234	186	212	61.0612
CUAACGGCUCUUUUAAGAGCCACCCA	chr6:27100038-27100299(-)$1	261	179	205	57.2857
UCAAAGGCUCUUUUCAGAGCCACUCA	chr6:26216395-26216649(-)$1	254	183	209	62.2857
CCAAAGGCUCUUUUAAGAGCCACUUA	chr6:27114050-27114338(-)$1	288	173	199	59.6326
CCAAAGGCCCUUUUCAGGGCCGCCCA	chr6:26285310-26285531(-)$1	221	152	178	56.8775
UCAAAGGCCCUUUUCAGGGCCGCCCA	chr6:26205025-26205291(+)$1	266	198	224	53.4081
CCAAAGGCUCUUUUCAGAGCCACUUA	chr6:26252152-26252401(+)$1	249	125	151	63.5102
UCAAAGGCUCUUUUCAGAGCCACUCA	chr6:26216376-26216595(-)$1	219	129	155	62.2857
CCAAAGGCUCUUUUCAGAGCCACCUA	chr6:27776257-27776474(+)$1	217	162	188	66.3673
CCAAAGGCUCUUUUCAGAGCCCCCCU	chr6:26124687-26124937(+)$1	250	204	230	60.7551
CCAAAGGCUCUUUUAAGAGCCACCCA	chr6:26123600-26123855(-)$1	255	135	161	64.7346
UAAAAGGCCCUUUUCAGGGCCACCCU	chr6:27792098-27792318(+)$1	220	133	159	51.1632
CCAAAGGCUCUUUUUAGAGCCACCCA	chr1:149858807-149859059(+)$1	252	128	154	64.3265
ACAAAGGCUCUUUUCAGAGCCAUUCU	chr6:27115139-27115405(+)$1	266	180	206	53.9183
AUAAAGGCUCUUUUCAGAGCCACCUA	chr1:228645004-228645246(-)$1	242	156	182	59.3265
ACAAAGGCUCUUUUCAGAGCCACCCA	chr6:26198977-26199246(-)$1	269	209	235	65.0408
CCAAAGGCUCUUUUCAGAGCCCCCCU	chr6:26124737-26124950(+)$1	213	154	180	60.7551
CAAAAGGCUCUUUUCAGAGCCACCCA	chr6:27860421-27860671(-)$1	250	169	195	65.7551
CCAAAGGCUCUUUUCAGAGCCACCAA	chr6:26250327-26250600(-)$1	273	207	233	66.2653
CCAAAGGCUCUUUUCAGAGCCACCCA	chr6:27834471-27834760(-)$1	289	165	191	68.6122
CCAAAGGCUCUUUUCAGAGCCACCCA	chr1:149857670-149857939(-)$1	269	181	207	68.6122
CCAAAGGCUCUUUUCAGAGCCACCCA	chr6:26157152-26157367(+)$1	215	165	191	68.6122
CUAAAGGCUCUUUUCAGAGCCACUGC	chr1:149784741-149784985(-)$1	244	182	208	55.8571
CCAACGGCCCUUUUCAGGGCCACCUA	chr6:26188889-26189109(-)$1	220	146	172	54.8367
CCAAAGGCUCUUUUCAGAGCCACCCA	chr6:27778110-27778356(+)$1	246	178	204	68.6122
CAAAAGGCUCUUUUCAGAGCCACCCA	chr1:149813687-149813993(-)$1	306	183	209	65.7551
CCAAAGGCUCUUUUCAGAGCCACCCA	chr6:27778156-27778366(+)$1	210	132	158	68.6122
CCAAAGGCUCUUUUCAGAGCCACUCA	chr6:27806700-27806930(+)$1	230	162	188	65.7551
CCAAAGGCUCUUUUCAGAGCCAACCA	chr6:26196976-26197224(-)$1	248	187	213	63.9183
CAAAAGGCUCUUUUCAGAGCCACCAC	chr6:26055952-26056192(-)$1	240	200	226	60.0408
CCAAAGGCUCUUUUAAGAGCCACGCA	chr6:26158665-26158934(+)$1	269	144	170	60.9591
CAAAAGGCUCUUUUCAGAGCCACCAC	chr6:26055927-26056132(-)$1	205	140	166	60.0408
CCAAAGGCUCUUUUCAGAGCCACUUA	chr6:27858058-27858280(-)$1	222	162	188	63.5102
GCAAAGGCUCUUUUCAGAGCCACCAC	chr6:26020995-26021279(+)$1	284	159	185	59.0204
CCAAAGGCUCUUUUCAGAGCCACCCA	chr1:228646099-228646358(+)$1	259	134	160	68.6122
CCAAAGGCUCUUUUCAGAGCCACCCA	chr6:26031785-26032007(-)$1	222	162	188	68.6122
CCAAAGGCCCUUUUCAGGGCCGCUCA	chr6:26104348-26104600(+)$1	252	191	217	54.0204
CCAAAGGCUCUUUUCAGAGCCACCAA	chr6:26250269-26250527(-)$1	258	134	160	66.2653
CAAAAGGCUCUUUUCAGAGCCACCAC	chr6:26055917-26056127(-)$1	210	135	161	60.0408
CCAAAGGCUCUUUUCAGAGCCACCCA	chr6:26157167-26157441(+)$1	274	150	176	68.6122
CCAAAGGCUCUUUUCAGAGCCACUCA	chr6:27861507-27861762(+)$1	255	135	161	65.7551
CCAAAGGCUCUUUUAAGAGCCACCAA	chr1:149858918-149859185(-)$1	267	142	168	62.3877
CCAAAGGCUCUUUUCAGAGCCACCCA	chr6:26217459-26217694(+)$1	235	180	206	68.6122

#otherMatches

#Struct PSSM
:::::ffffffmmmmffffff:eeee	chr6:26234369-26234611(-)$1	242	146	172	58.3061
CCC::ffffffmmmmffffff:::::	chr6:27776204-27776455(+)$1	251	215	241	66.3673
qqqqqbbccc::::::DDDD~~~~CC	chr6:27101136-27101368(+)$1	232	152	178	61.0612
:::::ffffffmmmmffffff::eee	chr6:27776274-27776518(+)$1	244	145	171	66.3673
:::::ffffffmmmmffffff:::FF	chr6:27805558-27805834(-)$1	276	151	177	55.1428
:::::ffffffmmmmffffff:EEEE	chr6:26055932-26056152(-)$1	220	160	186	60.0408
qqqqqbbccc::::::DDDD~~~~CC	chr6:27101102-27101336(+)$1	234	186	212	61.0612
:::::ffffffmmmmffffff:::::	chr6:27100038-27100299(-)$1	261	179	205	57.2857
:::::ffffffmmmmffffff:::::	chr6:26216395-26216649(-)$1	254	183	209	62.2857
sssssdddd333ffffffbb]dddd>	chr6:27114050-27114338(-)$1	288	173	199	59.6326
:::::ffffffmmmmffffffbb"""	chr6:26285310-26285531(-)$1	221	152	178	56.8775
:::::ffffffmmmmffffff:::CC	chr6:26205025-26205291(+)$1	266	198	224	53.4081
:::::ffffffmmmmffffff:ffff	chr6:26252152-26252401(+)$1	249	125	151	63.5102
:::=========="""ccc[aooooo	chr6:26216376-26216595(-)$1	219	129	155	62.2857
'''''ffffffmmmmffffff88888	chr6:27776257-27776474(+)$1	217	162	188	66.3673
+++++ffffffmmmmffffff77777	chr6:26124687-26124937(+)$1	250	204	230	60.7551
EE:::ffffffmmmmffffff:::::	chr6:26123600-26123855(-)$1	255	135	161	64.7346
:::::ffffffmmmmffffff:::gg	chr6:27792098-27792318(+)$1	220	133	159	51.1632
==============[iiiiiiiii[d	chr1:149858807-149859059(+)$1	252	128	154	64.3265
GGGGGffffffmmmmffffff::ddd	chr6:27115139-27115405(+)$1	266	180	206	53.9183
&&&&&ffffffmmmmffffff55555	chr1:228645004-228645246(-)$1	242	156	182	59.3265
+++++ffffffmmmmffffff55555	chr6:26198977-26199246(-)$1	269	209	235	65.0408
:::::ffffffmmmmffffff:::::	chr6:26124737-26124950(+)$1	213	154	180	60.7551
:::::ffffffmmmmffffff:::::	chr6:27860421-27860671(-)$1	250	169	195	65.7551
:::::ffffffmmmmffffff::ddd	chr6:26250327-26250600(-)$1	273	207	233	66.2653
:::::ffffffmmmmffffffBBDDD	chr6:27834471-27834760(-)$1	289	165	191	68.6122
mccc:ffffffmmmmffffff:::::	chr1:149857670-149857939(-)$1	269	181	207	68.6122
:ccc[iiiiiiiiiaeeeeeqqqqqq	chr6:26157152-26157367(+)$1	215	165	191	68.6122
:::::ffffffmmmmffffffbb[bb	chr1:149784741-149784985(-)$1	244	182	208	55.8571
:::::ffffffmmmmffffff::ddd	chr6:26188889-26189109(-)$1	220	146	172	54.8367
EE::ccc[iiiiiiiii[bbbboooo	chr6:27778110-27778356(+)$1	246	178	204	68.6122
%%%%%ffffffmmmmffffff66666	chr1:149813687-149813993(-)$1	306	183	209	65.7551
BEEEEECCChhhhhhhh[bbbboooo	chr6:27778156-27778366(+)$1	210	132	158	68.6122
:::::ffffffmmmmffffff:::::	chr6:27806700-27806930(+)$1	230	162	188	65.7551
:::::ffffffmmmmffffff:::bb	chr6:26196976-26197224(-)$1	248	187	213	63.9183
:::::ffffffmmmmffffff::A}B	chr6:26055952-26056192(-)$1	240	200	226	60.0408
DD:::ffffffmmmmffffff:::::	chr6:26158665-26158934(+)$1	269	144	170	60.9591
:::::ffffffmmmmffffff:::::	chr6:26055927-26056132(-)$1	205	140	166	60.0408
:::::ffffffmmmmffffff:::::	chr6:27858058-27858280(-)$1	222	162	188	63.5102
qqqqqdddd4444ffffff22eeeee	chr6:26020995-26021279(+)$1	284	159	185	59.0204
:::::ffffffmmmmffffffdddd"	chr1:228646099-228646358(+)$1	259	134	160	68.6122
:::::ffffffmmmmffffff::::d	chr6:26031785-26032007(-)$1	222	162	188	68.6122
:::::ffffffmmmmffffff:ccc[	chr6:26104348-26104600(+)$1	252	191	217	54.0204
CC:::ffffffmmmmffffff::ddd	chr6:26250269-26250527(-)$1	258	134	160	66.2653
:::::ffffffmmmmffffff:::::	chr6:26055917-26056127(-)$1	210	135	161	60.0408
CC:::ffffffmmmmffffff::ddd	chr6:26157167-26157441(+)$1	274	150	176	68.6122
!bb[hhhhhhhhccc[ddddpppppp	chr6:27861507-27861762(+)$1	255	135	161	65.7551
==============[iiiiiiiii[d	chr1:149858918-149859185(-)$1	267	142	168	62.3877
$$$$$ffffffmmmmffffff88888	chr6:26217459-26217694(+)$1	235	180	206	68.6122

#DB
.....((((((....)))))).((((	chr6:26234369-26234611(-)$1	1	146	172	58.3061
)))..((((((....)))))).....	chr6:27776204-27776455(+)$1	1	215	241	66.3673
.....)))))......))))....))	chr6:27101136-27101368(+)$1	1	152	178	61.0612
.....((((((....))))))..(((	chr6:27776274-27776518(+)$1	1	145	171	66.3673
.....((((((....))))))...))	chr6:27805558-27805834(-)$1	1	151	177	55.1428
.....((((((....)))))).))))	chr6:26055932-26056152(-)$1	1	160	186	60.0408
.....)))))......))))....))	chr6:27101102-27101336(+)$1	1	186	212	61.0612
.....((((((....)))))).....	chr6:27100038-27100299(-)$1	1	179	205	57.2857
.....((((((....)))))).....	chr6:26216395-26216649(-)$1	1	183	209	62.2857
.....))))...)))))))).)))).	chr6:27114050-27114338(-)$1	1	173	199	59.6326
.....((((((....))))))((...	chr6:26285310-26285531(-)$1	1	152	178	56.8775
.....((((((....))))))...))	chr6:26205025-26205291(+)$1	1	198	224	53.4081
.....((((((....)))))).((((	chr6:26252152-26252401(+)$1	1	125	151	63.5102
...((((((((((...(((.(.....	chr6:26216376-26216595(-)$1	1	129	155	62.2857
.....((((((....)))))).....	chr6:27776257-27776474(+)$1	1	162	188	66.3673
.....((((((....)))))).....	chr6:26124687-26124937(+)$1	1	204	230	60.7551
((...((((((....)))))).....	chr6:26123600-26123855(-)$1	1	135	161	64.7346
.....((((((....))))))...((	chr6:27792098-27792318(+)$1	1	133	159	51.1632
((((((((((((((.(((((((((.(	chr1:149858807-149859059(+)$1	1	128	154	64.3265
(((((((((((....))))))..(((	chr6:27115139-27115405(+)$1	1	180	206	53.9183
.....((((((....)))))).....	chr1:228645004-228645246(-)$1	1	156	182	59.3265
.....((((((....)))))).....	chr6:26198977-26199246(-)$1	1	209	235	65.0408
.....((((((....)))))).....	chr6:26124737-26124950(+)$1	1	154	180	60.7551
.....((((((....)))))).....	chr6:27860421-27860671(-)$1	1	169	195	65.7551
.....((((((....))))))..(((	chr6:26250327-26250600(-)$1	1	207	233	66.2653
.....((((((....)))))))))))	chr6:27834471-27834760(-)$1	1	165	191	68.6122
.))).((((((....)))))).....	chr1:149857670-149857939(-)$1	1	181	207	68.6122
.(((.(((((((((((((((......	chr6:26157152-26157367(+)$1	1	165	191	68.6122
.....((((((....))))))((.((	chr1:149784741-149784985(-)$1	1	182	208	55.8571
.....((((((....))))))..(((	chr6:26188889-26189109(-)$1	1	146	172	54.8367
))..(((.(((((((((.((((....	chr6:27778110-27778356(+)$1	1	178	204	68.6122
.....((((((....)))))).....	chr1:149813687-149813993(-)$1	1	183	209	65.7551
)))))))))((((((((.((((....	chr6:27778156-27778366(+)$1	1	132	158	68.6122
.....((((((....)))))).....	chr6:27806700-27806930(+)$1	1	162	188	65.7551
.....((((((....))))))...((	chr6:26196976-26197224(-)$1	1	187	213	63.9183
.....((((((....))))))..).)	chr6:26055952-26056192(-)$1	1	200	226	60.0408
))...((((((....)))))).....	chr6:26158665-26158934(+)$1	1	144	170	60.9591
.....((((((....)))))).....	chr6:26055927-26056132(-)$1	1	140	166	60.0408
.....((((((....)))))).....	chr6:27858058-27858280(-)$1	1	162	188	63.5102
.....))))....))))))..)))))	chr6:26020995-26021279(+)$1	1	159	185	59.0204
.....((((((....))))))((((.	chr1:228646099-228646358(+)$1	1	134	160	68.6122
.....((((((....))))))....(	chr6:26031785-26032007(-)$1	1	162	188	68.6122
.....((((((....)))))).(((.	chr6:26104348-26104600(+)$1	1	191	217	54.0204
((...((((((....))))))..(((	chr6:26250269-26250527(-)$1	1	134	160	66.2653
.....((((((....)))))).....	chr6:26055917-26056127(-)$1	1	135	161	60.0408
((...((((((....))))))..(((	chr6:26157167-26157441(+)$1	1	150	176	68.6122
.((.(((((((((((.((((......	chr6:27861507-27861762(+)$1	1	135	161	65.7551
((((((((((((((.(((((((((.(	chr1:149858918-149859185(-)$1	1	142	168	62.3877
.....((((((....)))))).....	chr6:26217459-26217694(+)$1	1	180	206	68.6122

#PSSM
C : 0.79	U : 0.10	A : 0.08	G : 0.02	
C : 0.75	A : 0.18	U : 0.06	
A : 1.00	
A : 1.00	
A : 0.89	C : 0.10	
G : 1.00	
G : 1.00	
C : 0.97	U : 0.02	
U : 0.89	C : 0.10	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 0.87	A : 0.10	U : 0.02	
A : 1.00	
G : 1.00	
A : 0.85	G : 0.14	
G : 1.00	
C : 1.00	
C : 1.00	
A : 0.89	G : 0.06	C : 0.04	
C : 0.95	U : 0.02	A : 0.02	
C : 0.77	U : 0.20	G : 0.02	
C : 0.63	U : 0.18	A : 0.16	G : 0.02	
A : 0.79	C : 0.12	U : 0.08	

#score	3057.714285714287
#seq	49
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_UTR_m3_run1.nuc.txt

#NT
GGGUAAUCGGGGCCCUGGCUUGCCGCGUCCGCCGGAUACCCUCAGCCAGUGGGCAGGUCUGAGCUCGGGCUCCCCGAGCAGUUUGAGUCCCCUUGCCCGCUCCUUCAGGUAACGGCGCGGGGACGGGUGGGGCGGCAAGCGGUCGCAGGGAGGUGGGCAGGACGGGAUCCGCCCUGCUCCCGUCGCCGUGAGACUUAGCACGAGGCCAAGGGAGGAGAGGAGGGGGGUGGCAGGCAGGUGCGGGCCCUGCCUGGCUAUUCAUAGUUGAAUUCCUGGAACCGGCCAAGCCCGAG	chr19:40324455-40324771(-)$1	316	1	294	391.5000

#otherMatches

#Struct PSSM
CC{CCC{A{DDDDKKEEEEEAKKA{IIIIIIIIIeeeee[bbbb!!gggggggggggggg!!ggggggg[ccc[ddddoooooodddd]cccggggggg333ggggggg55555ggggggg22bb]bb]eeeeeccc[annnnna]ccc:AKKHHHHHHHH{BBcccqqqqqqqqccc::::::dddd!!bb[cccnnnnnccc]bb]dddd:::::BB}HHHHHHHHYYA:bbnnnnnbbIIIIIIIII}AYYAYYEEEEE?????DDDDA}CCC}CCCDDDD::::cccmm	chr19:4042780-4043134(-)$1	354	32	325	391.5000
CC{BBKKHHHHHHHHKKGGGGGGGKKA{EEEEENNNNNBBCCCKKBBKKCCC{AKKBBEEEEEDDDDCCCddddccc[a[eeeee[eeeeeddddeeeee[bbssssssssssbb]eeeee22dddd]eeeee22eeeeea]ccc22ddddbb[ggggggg[ccclllccc]gggggggbb:::CCC}DDDD}EEEEE}BBYYA}CCCYYBBYYCCC}BB?????EEEEEA}GGGGGGGYYHHHHHHHHYYBB}CCC::::::ccc"""ffffff[ccc!!bb####bblllb	chr19:40324455-40324771(-)$1	316	1	294	391.5000

#DB
((.(((.(.((((..((((((..(.((((((((((((((.((((..((((((((((((((..(((((((.(((.((((......)))).))))))))))...))))))).....)))))))..)).)).)))))(((.(.....).))).(..((((((((.(((((........)))......((((..((.(((.....))).)).)))).....)).))))))))..).((.....))))))))))).)..)..))))).....))))).))).)))))))....(((..	chr19:4042780-4043134(-)$1	1	32	325	391.5000
((.((..((((((((..(((((((..(.(((((.....(((((..((..(((.(..(((((((((((((((((((((.(.(((((.((((((((((((((.((..........)).)))))..)))).)))))..)))))).)))..))))((.(((((((.(((...))).)))))))))...))).)))).))))).))..).)))..))..))).)).....)))))).)))))))..))))))))..)).)))......(((...((((((.(((..((....((...)	chr19:40324455-40324771(-)$1	1	1	294	391.5000

#PSSM
G : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	

#score	783.0
#seq	2
#width	293
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_UTR_m2_run2.nuc.txt

#NT
GCGGCGGC	chr20:44992906-44993139(-)$1	233	67	75	20.7647
gcggcggc	chr9:126030612-126030856(-)$1	244	86	94	20.7647
GCGGCUGC	chr2:74153923-74154260(+)$1	337	270	278	16.3529
gcggcggc	chr1:19811826-19812121(-)$1	295	49	57	20.7647
GCGGCGGC	chr12:118454419-118454792(+)$1	373	293	301	20.7647
gcgucggc	chr11:76091726-76092030(-)$1	304	31	39	16.6470
GCCGCGGC	chr13:100153708-100153971(+)$1	263	190	198	17.2352
UCGGCGGC	chr15:52121869-52122134(+)$1	265	137	145	16.2058
gcggcggc	chr9:137001131-137001423(+)$1	292	137	145	20.7647
GCCGCGGC	chr12:53574405-53574721(+)$1	316	129	137	17.2352
GCGGCGGC	chr11:107729284-107729632(-)$1	348	193	201	20.7647
GCGUCGGC	chr14:104028851-104029098(-)$1	247	107	115	16.6470
UCGGCGGC	chr1:167905061-167905368(-)$1	307	280	288	16.2058
GCGGCGGC	chr3:51975696-51975987(-)$1	291	178	186	20.7647
gcggggGC	chr15:90728080-90728340(+)$1	260	58	66	16.2058
GCAGCGGC	chr11:65625469-65625686(-)$1	217	51	59	16.7941
GCCGCGGC	chr14:105219388-105219757(+)$1	369	226	234	17.2352
gcggcggc	chr19:45394412-45394677(+)$1	265	79	87	20.7647
GCCGCGGC	chr16:75681372-75681657(-)$1	285	4	12	17.2352
GCGGCGGC	chr11:67798034-67798300(+)$1	266	150	158	20.7647
gcggcggc	chrX:153285114-153285371(-)$1	257	96	104	20.7647
GGGGCGGC	chr16:89723888-89724136(-)$1	248	15	23	16.2058
GCGGCGGC	chr7:106301236-106301553(-)$1	317	83	91	20.7647
GCggcggg	chr9:35732077-35732444(-)$1	367	324	332	15.9852
ACGGCGGC	chr6:166755881-166756145(-)$1	264	38	46	16.1323
gccgcggc	chr3:49449151-49449419(-)$1	268	250	258	17.2352
GCGGCGUC	chr7:100033870-100034177(-)$1	307	71	79	16.2058
gcggcggc	chr6:34360224-34360538(-)$1	314	144	152	20.7647
GCGCCGGC	chr4:10458837-10459126(-)$1	289	17	25	16.8676
GCGGCGCC	chr2:201676533-201676813(+)$1	280	187	195	16.1323
GCGGCGGC	chr1:155658779-155659020(+)$1	241	51	59	20.7647
gcggcggc	chr6:108581978-108582345(-)$1	367	150	158	20.7647
GCGGAGGC	chr13:111267820-111268097(+)$1	277	38	46	16.2058
GCCGCGGC	chr3:49059677-49059922(+)$1	245	217	225	17.2352
GCGCCGGC	chr1:1167170-1167452(-)$1	282	36	44	16.8676
GCGGUGGC	chr17:8191891-8192244(+)$1	353	119	127	16.3529
GCGGCGGC	chr9:127631348-127631636(+)$1	288	71	79	20.7647
GCGGCGGC	chr7:102105066-102105401(-)$1	335	121	129	20.7647
GCUGCGGC	chr9:37120449-37120727(+)$1	278	162	170	16.7941
GCGCCGGC	chr17:27224549-27224777(-)$1	228	2	10	16.8676
GCGGCGUC	chr19:50321455-50321752(+)$1	297	95	103	16.2058
gcggcggc	chr12:131356560-131356771(+)$1	211	158	166	20.7647
GGGGCGGC	chr7:100303701-100303962(+)$1	261	238	246	16.2058
GCGGCUGC	chr3:119813119-119813361(-)$1	242	43	51	16.3529
GCGGUGGC	chr3:131221506-131221772(-)$1	266	29	37	16.3529
gcggcggc	chr3:19988766-19989029(+)$1	263	0	8	20.7647
GCUGCGGC	chr21:45553422-45553777(+)$1	355	193	201	16.7941
GCGCCGGC	chr12:120934117-120934356(+)$1	239	22	30	16.8676
gcggcggc	chr3:48885042-48885325(-)$1	283	69	77	20.7647
GGGGCGGC	chr1:38273359-38273716(+)$1	357	91	99	16.2058
GCGGCCGC	chr2:10829867-10830197(-)$1	330	107	115	16.2794
GCGGCGGC	chr17:79268926-79269188(-)$1	262	96	104	20.7647
GCGGCUGC	chr1:201123472-201123697(-)$1	225	104	112	16.3529
GCCGCGGC	chr2:183902912-183903195(-)$1	283	193	201	17.2352
gcggcggc	chr7:44887467-44887731(-)$1	264	66	74	20.7647
GCGGCCGC	chr8:27629957-27630258(-)$1	301	116	124	16.2794
GCAGCGGC	chrX:47003966-47004187(-)$1	221	154	162	16.7941
gcggcggc	chr5:139027824-139028133(+)$1	309	104	112	20.7647
GCGGCGGA	chr2:55646539-55646815(-)$1	276	0	8	15.9852
GCGCCGGC	chr15:44084428-44084662(+)$1	234	217	225	16.8676
GCGGCGGC	chr2:96874275-96874539(-)$1	264	230	238	20.7647
GCGUCGGC	chr1:155880943-155881256(-)$1	313	208	216	16.6470
GCGGCGGC	chr16:84733517-84733814(+)$1	297	74	82	20.7647
GCGCCGGC	chr5:31532319-31532675(+)$1	356	114	122	16.8676
GCGGUGGC	chr1:226595585-226595869(-)$1	284	94	102	16.3529
CCGGCGGC	chr11:63741995-63742225(+)$1	230	204	212	16.1323
gccgcggc	chr8:55014296-55014571(-)$1	275	133	141	17.2352

#otherMatches

#Struct PSSM
e[bb[bbb	chr11:64084820-64085128(-)$1	308	122	130	16.1323
eeeeeccc	chr20:44992906-44993139(-)$1	233	67	75	20.7647
========	chr9:126030612-126030856(-)$1	244	86	94	20.7647
neeeeeee	chr2:74153923-74154260(+)$1	337	270	278	16.3529
[cccmmmm	chr1:19811826-19812121(-)$1	295	49	57	20.7647
eeeee[bb	chr12:118454419-118454792(+)$1	373	293	301	20.7647
BB:eeeee	chr11:76091726-76092030(-)$1	304	31	39	16.6470
gggeeeee	chr13:100153708-100153971(+)$1	263	190	198	17.2352
fffffccc	chr15:52121869-52122134(+)$1	265	137	145	16.2058
========	chr9:137001131-137001423(+)$1	292	137	145	20.7647
BB{DDDDA	chr12:53574405-53574721(+)$1	316	129	137	17.2352
ee[eeeee	chr11:107729284-107729632(-)$1	348	193	201	20.7647
mmmbb]ee	chr14:104028851-104029098(-)$1	247	107	115	16.6470
hhhhhhhh	chr1:167905061-167905368(-)$1	307	280	288	16.2058
IIIIIIII	chr3:51975696-51975987(-)$1	291	178	186	20.7647
""hhhhhh	chr15:90728080-90728340(+)$1	260	58	66	16.2058
ee:::hhh	chr11:65625469-65625686(-)$1	217	51	59	16.7941
YYJJJJJJ	chr14:105219388-105219757(+)$1	369	226	234	17.2352
======[a	chr19:45394412-45394677(+)$1	265	79	87	20.7647
D:HHHHHH	chr16:75681372-75681657(-)$1	285	4	12	17.2352
2ccc]ccc	chr11:67798034-67798300(+)$1	266	150	158	20.7647
g[gggggg	chrX:153285114-153285371(-)$1	257	96	104	20.7647
BBhhhhhh	chr16:89723888-89724136(-)$1	248	15	23	16.2058
========	chr7:106301236-106301553(-)$1	317	83	91	20.7647
bbccc"""	chr9:35732077-35732444(-)$1	367	324	332	15.9852
]bb]eeee	chr6:166755881-166756145(-)$1	264	38	46	16.1323
oooeeeee	chr3:49449151-49449419(-)$1	268	250	258	17.2352
dd4444cc	chr7:100033870-100034177(-)$1	307	71	79	16.2058
bbmmmmbb	chr6:34360224-34360538(-)$1	314	144	152	20.7647
FF{BB{GG	chr4:10458837-10459126(-)$1	289	17	25	16.8676
gggggg!!	chr2:201676533-201676813(+)$1	280	187	195	16.1323
ff22ffff	chr1:155658779-155659020(+)$1	241	51	59	20.7647
bb[bbmmm	chr6:108581978-108582345(-)$1	367	150	158	20.7647
FFFFKKJJ	chr13:111267820-111268097(+)$1	277	38	46	16.2058
ccchhhhh	chr3:49059677-49059922(+)$1	245	217	225	17.2352
a[bb[eee	chr1:1167170-1167452(-)$1	282	36	44	16.8676
EEEE}BBD	chr17:8191891-8192244(+)$1	353	119	127	16.3529
g::ccc[e	chr9:127631348-127631636(+)$1	288	71	79	20.7647
fffffmmm	chr7:102105066-102105401(-)$1	335	121	129	20.7647
ffff]bb]	chr9:37120449-37120727(+)$1	278	162	170	16.7941
iiiiiiii	chr17:27224549-27224777(-)$1	228	2	10	16.8676
gggggmmm	chr19:50321455-50321752(+)$1	297	95	103	16.2058
JJJJ}DDD	chr12:131356560-131356771(+)$1	211	158	166	20.7647
eeeee555	chr7:100303701-100303962(+)$1	261	238	246	16.2058
cccmmmmc	chr3:119813119-119813361(-)$1	242	43	51	16.3529
gggggggh	chr3:131221506-131221772(-)$1	266	29	37	16.3529
::BB{EEE	chr3:19988766-19989029(+)$1	263	0	8	20.7647
dddddddl	chr21:45553422-45553777(+)$1	355	193	201	16.7941
f[bb[ddd	chr12:120934117-120934356(+)$1	239	22	30	16.8676
EEE{A{CC	chr3:48885042-48885325(-)$1	283	69	77	20.7647
F{CCCddd	chr1:38273359-38273716(+)$1	357	91	99	16.2058
2aeeeee]	chr2:10829867-10830197(-)$1	330	107	115	16.2794
gggg[a[e	chr17:79268926-79269188(-)$1	262	96	104	20.7647
bb[bb!!a	chr1:201123472-201123697(-)$1	225	104	112	16.3529
dd]iiiii	chr2:183902912-183903195(-)$1	283	193	201	17.2352
bb]bb:bb	chr7:44887467-44887731(-)$1	264	66	74	20.7647
ddddhhhh	chr8:27629957-27630258(-)$1	301	116	124	16.2794
ffdddd::	chrX:47003966-47004187(-)$1	221	154	162	16.7941
]ffffffd	chr5:139027824-139028133(+)$1	309	104	112	20.7647
::::::::	chr2:55646539-55646815(-)$1	276	0	8	15.9852
lffffff:	chr15:44084428-44084662(+)$1	234	217	225	16.8676
DCCCFFFF	chr2:96874275-96874539(-)$1	264	230	238	20.7647
nnbb22dd	chr1:155880943-155881256(-)$1	313	208	216	16.6470
{GGGGGGG	chr16:84733517-84733814(+)$1	297	74	82	20.7647
a]======	chr5:31532319-31532675(+)$1	356	114	122	16.8676
DDDD}GGG	chr1:226595585-226595869(-)$1	284	94	102	16.3529
:::eeeee	chr11:63741995-63742225(+)$1	230	204	212	16.1323
ddd]a]ii	chr8:55014296-55014571(-)$1	275	133	141	17.2352

#DB
(.((.(((	chr11:64084820-64085128(-)$1	1	122	130	16.1323
))))))))	chr20:44992906-44993139(-)$1	1	67	75	20.7647
))))))))	chr9:126030612-126030856(-)$1	1	86	94	20.7647
.)))))))	chr2:74153923-74154260(+)$1	1	270	278	16.3529
.(((....	chr1:19811826-19812121(-)$1	1	49	57	20.7647
(((((.((	chr12:118454419-118454792(+)$1	1	293	301	20.7647
((.(((((	chr11:76091726-76092030(-)$1	1	31	39	16.6470
)))(((((	chr13:100153708-100153971(+)$1	1	190	198	17.2352
)))))(((	chr15:52121869-52122134(+)$1	1	137	145	16.2058
))))))))	chr9:137001131-137001423(+)$1	1	137	145	20.7647
((.(((((	chr12:53574405-53574721(+)$1	1	129	137	17.2352
((.(((((	chr11:107729284-107729632(-)$1	1	193	201	20.7647
...)).))	chr14:104028851-104029098(-)$1	1	107	115	16.6470
((((((((	chr1:167905061-167905368(-)$1	1	280	288	16.2058
))))))))	chr3:51975696-51975987(-)$1	1	178	186	20.7647
..((((((	chr15:90728080-90728340(+)$1	1	58	66	16.2058
))...(((	chr11:65625469-65625686(-)$1	1	51	59	16.7941
..))))))	chr14:105219388-105219757(+)$1	1	226	234	17.2352
((((((.(	chr19:45394412-45394677(+)$1	1	79	87	20.7647
(.((((((	chr16:75681372-75681657(-)$1	1	4	12	17.2352
.))).)))	chr11:67798034-67798300(+)$1	1	150	158	20.7647
(.((((((	chrX:153285114-153285371(-)$1	1	96	104	20.7647
((((((((	chr16:89723888-89724136(-)$1	1	15	23	16.2058
((((((((	chr7:106301236-106301553(-)$1	1	83	91	20.7647
(((((...	chr9:35732077-35732444(-)$1	1	324	332	15.9852
.)).))))	chr6:166755881-166756145(-)$1	1	38	46	16.1323
...)))))	chr3:49449151-49449419(-)$1	1	250	258	17.2352
))....))	chr7:100033870-100034177(-)$1	1	71	79	16.2058
((....))	chr6:34360224-34360538(-)$1	1	144	152	20.7647
((.((.((	chr4:10458837-10459126(-)$1	1	17	25	16.8676
((((((..	chr2:201676533-201676813(+)$1	1	187	195	16.1323
))..))))	chr1:155658779-155659020(+)$1	1	51	59	20.7647
((.((...	chr6:108581978-108582345(-)$1	1	150	158	20.7647
((((..((	chr13:111267820-111268097(+)$1	1	38	46	16.2058
))))))))	chr3:49059677-49059922(+)$1	1	217	225	17.2352
(.((.(((	chr1:1167170-1167452(-)$1	1	36	44	16.8676
)))).)))	chr17:8191891-8192244(+)$1	1	119	127	16.3529
)..(((.(	chr9:127631348-127631636(+)$1	1	71	79	20.7647
(((((...	chr7:102105066-102105401(-)$1	1	121	129	20.7647
)))).)).	chr9:37120449-37120727(+)$1	1	162	170	16.7941
((((((((	chr17:27224549-27224777(-)$1	1	2	10	16.8676
(((((...	chr19:50321455-50321752(+)$1	1	95	103	16.2058
)))).)))	chr12:131356560-131356771(+)$1	1	158	166	20.7647
)))))...	chr7:100303701-100303962(+)$1	1	238	246	16.2058
(((....)	chr3:119813119-119813361(-)$1	1	43	51	16.3529
))))))))	chr3:131221506-131221772(-)$1	1	29	37	16.3529
..((.(((	chr3:19988766-19989029(+)$1	1	0	8	20.7647
)))((((.	chr21:45553422-45553777(+)$1	1	193	201	16.7941
(.((.(((	chr12:120934117-120934356(+)$1	1	22	30	16.8676
(((.(.((	chr3:48885042-48885325(-)$1	1	69	77	20.7647
(.((((((	chr1:38273359-38273716(+)$1	1	91	99	16.2058
.)))))).	chr2:10829867-10830197(-)$1	1	107	115	16.2794
((((.(.(	chr17:79268926-79269188(-)$1	1	96	104	20.7647
((.((..(	chr1:201123472-201123697(-)$1	1	104	112	16.3529
)).)))))	chr2:183902912-183903195(-)$1	1	193	201	17.2352
)).)).((	chr7:44887467-44887731(-)$1	1	66	74	20.7647
((((((((	chr8:27629957-27630258(-)$1	1	116	124	16.2794
))))))..	chrX:47003966-47004187(-)$1	1	154	162	16.7941
.))))))(	chr5:139027824-139028133(+)$1	1	104	112	20.7647
........	chr2:55646539-55646815(-)$1	1	0	8	15.9852
.)))))).	chr15:44084428-44084662(+)$1	1	217	225	16.8676
))))))))	chr2:96874275-96874539(-)$1	1	230	238	20.7647
..))..))	chr1:155880943-155881256(-)$1	1	208	216	16.6470
.(((((((	chr16:84733517-84733814(+)$1	1	74	82	20.7647
).))))))	chr5:31532319-31532675(+)$1	1	114	122	16.8676
)))).)))	chr1:226595585-226595869(-)$1	1	94	102	16.3529
...(((((	chr11:63741995-63742225(+)$1	1	204	212	16.1323
))).).))	chr8:55014296-55014571(-)$1	1	133	141	17.2352

#PSSM
G : 0.70	g : 0.23	U : 0.02	A : 0.01	C : 0.01	
C : 0.72	c : 0.23	G : 0.04	
G : 0.60	g : 0.22	C : 0.08	A : 0.02	c : 0.02	U : 0.02	
G : 0.63	g : 0.23	C : 0.08	U : 0.02	u : 0.01	
C : 0.69	c : 0.23	U : 0.04	g : 0.01	A : 0.01	
G : 0.67	g : 0.25	U : 0.04	C : 0.02	
G : 0.70	g : 0.23	U : 0.02	A : 0.01	C : 0.01	
C : 0.74	c : 0.22	g : 0.01	A : 0.01	

#score	1227.5882352941169
#seq	68
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_CDS_m3_run2.nuc.txt

#NT
CCCA	chr7:45928444-45928689(+)$1	245	144	148	11.9999
CCCA	chr3:133467153-133467386(+)$1	233	97	101	11.9999
CCCA	chrM:6168-6376(+)$1	208	145	149	11.9999
CCCA	chr11:64013917-64014152(-)$1	235	75	79	11.9999
ccca	chr22:50017055-50017295(-)$1	240	170	174	11.9999
CCCA	chr11:111896272-111896536(+)$1	264	110	114	11.9999
CCCA	chrM:12757-12999(+)$1	242	170	174	11.9999
CCCA	chrM:15064-15278(+)$1	214	141	145	11.9999
CCCA	chrM:6155-6360(+)$1	205	158	162	11.9999
CCCA	chrM:12662-12870(+)$1	208	7	11	11.9999
CCCA	chr3:133465149-133465428(+)$1	279	32	36	11.9999
CCCA	chr19:6714262-6714492(-)$1	230	28	32	11.9999
CCCA	chr21:45941872-45942121(+)$1	249	5	9	11.9999
CCCA	chrM:3352-3559(+)$1	207	63	67	11.9999
CCCA	chrM:3219-3456(+)$1	237	91	95	11.9999
CCCA	chr12:53298425-53298664(-)$1	239	142	146	11.9999
CCCA	chr2:216270931-216271174(-)$1	243	90	94	11.9999
CCCA	chr1:230838864-230839139(-)$1	275	20	24	11.9999
CCCA	chr6:31760725-31760998(-)$1	273	182	186	11.9999
CCCA	chr19:2270408-2270710(+)$1	302	78	82	11.9999
CCCA	chr20:5986851-5987129(+)$1	278	269	273	11.9999
CCCA	chr19:6697304-6697566(-)$1	262	83	87	11.9999
CCCA	chrM:7153-7375(+)$1	222	28	32	11.9999
CCCA	chr11:62368813-62369055(-)$1	242	14	18	11.9999
CCCA	chrM:10575-10780(+)$1	205	46	50	11.9999
CCCA	chrM:8080-8286(+)$1	206	1	5	11.9999
CCCA	chrM:6537-6773(+)$1	236	48	52	11.9999
CCCA	chr4:74318187-74318430(+)$1	243	195	199	11.9999
CCCA	chr19:803388-803670(+)$1	282	77	81	11.9999
CCCA	chr19:1434713-1434941(+)$1	228	17	21	11.9999
CCCA	chr3:133467252-133467533(+)$1	281	119	123	11.9999
CCCA	chr3:133497329-133497587(+)$1	258	211	215	11.9999
CCCA	chr16:3767290-3767590(-)$1	300	30	34	11.9999
CCCA	chr2:216270974-216271242(-)$1	268	23	27	11.9999
CCCA	chrM:8059-8280(+)$1	221	22	26	11.9999
CCCA	chr16:29818696-29818966(+)$1	270	125	129	11.9999
CCCA	chr11:2005520-2005771(+)$1	251	72	76	11.9999
CCCA	chr4:74279036-74279240(+)$1	204	188	192	11.9999
CCCA	chr19:50985390-50985643(+)$1	253	129	133	11.9999
CCCA	chrM:6579-6802(+)$1	223	6	10	11.9999
CCCA	chrM:6149-6355(+)$1	206	164	168	11.9999
CCCA	chr11:65350861-65351124(+)$1	263	22	26	11.9999
CCCA	chr2:11484091-11484339(-)$1	248	194	198	11.9999
CCCA	chr16:23847341-23847639(+)$1	298	293	297	11.9999
CCCA	chr3:133475025-133475269(+)$1	244	95	99	11.9999
CCCA	chr15:41786026-41786293(+)$1	267	116	120	11.9999
CCCA	chr16:89043056-89043321(-)$1	265	2	6	11.9999
CCCA	chr7:155090082-155090329(+)$1	247	61	65	11.9999
CCCA	chr11:64013976-64014219(-)$1	243	142	146	11.9999
CCCA	chrM:10586-10794(+)$1	208	35	39	11.9999
CCCA	chrM:6184-6400(+)$1	216	129	133	11.9999
CCCA	chr1:1155984-1156227(-)$1	243	56	60	11.9999
CCCA	chrM:14989-15210(+)$1	221	216	220	11.9999
CCCA	chrM:6145-6349(+)$1	204	168	172	11.9999
CCCA	chr3:13418913-13419165(-)$1	252	39	43	11.9999
CCCA	chr6:170893429-170893724(-)$1	295	15	19	11.9999
CCCA	chr2:21228768-21229014(-)$1	246	93	97	11.9999
CCCA	chrM:7139-7353(+)$1	214	42	46	11.9999
CCCA	chr5:154135174-154135469(+)$1	295	38	42	11.9999
CCCA	chr6:170893553-170893810(-)$1	257	101	105	11.9999
CCCA	chr19:14552003-14552274(+)$1	271	216	220	11.9999
CCCA	chrM:6160-6368(+)$1	208	153	157	11.9999
CCCA	chr2:216248669-216248910(-)$1	241	233	237	11.9999
CCCA	chr3:186330821-186331092(+)$1	271	8	12	11.9999
CCCA	chr7:2394563-2394902(+)$1	339	313	317	11.9999
CCCA	chrM:14747-14971(+)$1	224	5	9	11.9999
CCCA	chr11:65349452-65349687(+)$1	235	133	137	11.9999
CCCA	chrM:12501-12713(+)$1	212	47	51	11.9999
CCCA	chrM:7946-8174(+)$1	228	11	15	11.9999
CCCA	chr16:28877636-28877877(+)$1	241	46	50	11.9999
CCCA	chrM:6095-6345(+)$1	250	22	26	11.9999

#otherMatches

#Struct PSSM
eeee	chrM:15041-15257(+)$1	216	164	168	11.9999
pppp	chr7:45928444-45928689(+)$1	245	144	148	11.9999
::ee	chr3:133467153-133467386(+)$1	233	97	101	11.9999
ddoo	chrM:6168-6376(+)$1	208	145	149	11.9999
IIEE	chr11:64013917-64014152(-)$1	235	75	79	11.9999
dddc	chr22:50017055-50017295(-)$1	240	170	174	11.9999
ddpp	chr11:111896272-111896536(+)$1	264	110	114	11.9999
C:::	chrM:12757-12999(+)$1	242	170	174	11.9999
eeee	chrM:15064-15278(+)$1	214	141	145	11.9999
ddoo	chrM:6155-6360(+)$1	205	158	162	11.9999
::::	chrM:12662-12870(+)$1	208	7	11	11.9999
ccc[	chr3:133465149-133465428(+)$1	279	32	36	11.9999
DDD:	chr19:6714262-6714492(-)$1	230	28	32	11.9999
Dbbb	chr21:45941872-45942121(+)$1	249	5	9	11.9999
&&&&	chrM:3352-3559(+)$1	207	63	67	11.9999
DDDF	chrM:3219-3456(+)$1	237	91	95	11.9999
[bbq	chr12:53298425-53298664(-)$1	239	142	146	11.9999
dooo	chr2:216270931-216271174(-)$1	243	90	94	11.9999
clll	chr1:230838864-230839139(-)$1	275	20	24	11.9999
qqqq	chr6:31760725-31760998(-)$1	273	182	186	11.9999
GGG:	chr19:2270408-2270710(+)$1	302	78	82	11.9999
::::	chr20:5986851-5987129(+)$1	278	269	273	11.9999
^^^^	chr19:6697304-6697566(-)$1	262	83	87	11.9999
::::	chrM:7153-7375(+)$1	222	28	32	11.9999
HHHK	chr11:62368813-62369055(-)$1	242	14	18	11.9999
::::	chrM:10575-10780(+)$1	205	46	50	11.9999
::::	chrM:8080-8286(+)$1	206	1	5	11.9999
FFBB	chrM:6537-6773(+)$1	236	48	52	11.9999
xccc	chr4:74318187-74318430(+)$1	243	195	199	11.9999
fff3	chr19:803388-803670(+)$1	282	77	81	11.9999
+++b	chr19:1434713-1434941(+)$1	228	17	21	11.9999
444d	chr3:133467252-133467533(+)$1	281	119	123	11.9999
d:::	chr3:133497329-133497587(+)$1	258	211	215	11.9999
EBB{	chr16:3767290-3767590(-)$1	300	30	34	11.9999
HHHH	chr2:216270974-216271242(-)$1	268	23	27	11.9999
uuuu	chrM:8059-8280(+)$1	221	22	26	11.9999
ddd[	chr16:29818696-29818966(+)$1	270	125	129	11.9999
gzzz	chr11:2005520-2005771(+)$1	251	72	76	11.9999
88cc	chr4:74279036-74279240(+)$1	204	188	192	11.9999
mma2	chr19:50985390-50985643(+)$1	253	129	133	11.9999
nbb:	chrM:6579-6802(+)$1	223	6	10	11.9999
ddoo	chrM:6149-6355(+)$1	206	164	168	11.9999
EE::	chr11:65350861-65351124(+)$1	263	22	26	11.9999
fff5	chr2:11484091-11484339(-)$1	248	194	198	11.9999
::::	chr16:23847341-23847639(+)$1	298	293	297	11.9999
"hhh	chr3:133475025-133475269(+)$1	244	95	99	11.9999
lla2	chr15:41786026-41786293(+)$1	267	116	120	11.9999
DDKK	chr16:89043056-89043321(-)$1	265	2	6	11.9999
c444	chr7:155090082-155090329(+)$1	247	61	65	11.9999
pppp	chr11:64013976-64014219(-)$1	243	142	146	11.9999
::::	chrM:10586-10794(+)$1	208	35	39	11.9999
ddoo	chrM:6184-6400(+)$1	216	129	133	11.9999
"ddd	chr1:1155984-1156227(-)$1	243	56	60	11.9999
::::	chrM:14989-15210(+)$1	221	216	220	11.9999
ddoo	chrM:6145-6349(+)$1	204	168	172	11.9999
nhhh	chr3:13418913-13419165(-)$1	252	39	43	11.9999
KKDD	chr6:170893429-170893724(-)$1	295	15	19	11.9999
[ccc	chr2:21228768-21229014(-)$1	246	93	97	11.9999
::::	chrM:7139-7353(+)$1	214	42	46	11.9999
c!!g	chr5:154135174-154135469(+)$1	295	38	42	11.9999
NNNF	chr6:170893553-170893810(-)$1	257	101	105	11.9999
mmmm	chr19:14552003-14552274(+)$1	271	216	220	11.9999
ddoo	chrM:6160-6368(+)$1	208	153	157	11.9999
eeee	chr2:216248669-216248910(-)$1	241	233	237	11.9999
DD{C	chr3:186330821-186331092(+)$1	271	8	12	11.9999
cbb]	chr7:2394563-2394902(+)$1	339	313	317	11.9999
::::	chrM:14747-14971(+)$1	224	5	9	11.9999
ffff	chr11:65349452-65349687(+)$1	235	133	137	11.9999
::::	chrM:12501-12713(+)$1	212	47	51	11.9999
::::	chrM:7946-8174(+)$1	228	11	15	11.9999
ff55	chr16:28877636-28877877(+)$1	241	46	50	11.9999
::::	chrM:6095-6345(+)$1	250	22	26	11.9999

#DB
((((	chrM:15041-15257(+)$1	1	164	168	11.9999
....	chr7:45928444-45928689(+)$1	1	144	148	11.9999
..((	chr3:133467153-133467386(+)$1	1	97	101	11.9999
((..	chrM:6168-6376(+)$1	1	145	149	11.9999
))((	chr11:64013917-64014152(-)$1	1	75	79	11.9999
((((	chr22:50017055-50017295(-)$1	1	170	174	11.9999
((..	chr11:111896272-111896536(+)$1	1	110	114	11.9999
)...	chrM:12757-12999(+)$1	1	170	174	11.9999
((((	chrM:15064-15278(+)$1	1	141	145	11.9999
((..	chrM:6155-6360(+)$1	1	158	162	11.9999
....	chrM:12662-12870(+)$1	1	7	11	11.9999
(((.	chr3:133465149-133465428(+)$1	1	32	36	11.9999
(((.	chr19:6714262-6714492(-)$1	1	28	32	11.9999
((((	chr21:45941872-45942121(+)$1	1	5	9	11.9999
....	chrM:3352-3559(+)$1	1	63	67	11.9999
)))(	chrM:3219-3456(+)$1	1	91	95	11.9999
.((.	chr12:53298425-53298664(-)$1	1	142	146	11.9999
(...	chr2:216270931-216271174(-)$1	1	90	94	11.9999
(...	chr1:230838864-230839139(-)$1	1	20	24	11.9999
....	chr6:31760725-31760998(-)$1	1	182	186	11.9999
(((.	chr19:2270408-2270710(+)$1	1	78	82	11.9999
....	chr20:5986851-5987129(+)$1	1	269	273	11.9999
....	chr19:6697304-6697566(-)$1	1	83	87	11.9999
....	chrM:7153-7375(+)$1	1	28	32	11.9999
(((.	chr11:62368813-62369055(-)$1	1	14	18	11.9999
....	chrM:10575-10780(+)$1	1	46	50	11.9999
....	chrM:8080-8286(+)$1	1	1	5	11.9999
((((	chrM:6537-6773(+)$1	1	48	52	11.9999
.)))	chr4:74318187-74318430(+)$1	1	195	199	11.9999
))).	chr19:803388-803670(+)$1	1	77	81	11.9999
...(	chr19:1434713-1434941(+)$1	1	17	21	11.9999
...)	chr3:133467252-133467533(+)$1	1	119	123	11.9999
)...	chr3:133497329-133497587(+)$1	1	211	215	11.9999
(((.	chr16:3767290-3767590(-)$1	1	30	34	11.9999
((((	chr2:216270974-216271242(-)$1	1	23	27	11.9999
....	chrM:8059-8280(+)$1	1	22	26	11.9999
(((.	chr16:29818696-29818966(+)$1	1	125	129	11.9999
(...	chr11:2005520-2005771(+)$1	1	72	76	11.9999
..))	chr4:74279036-74279240(+)$1	1	188	192	11.9999
..).	chr19:50985390-50985643(+)$1	1	129	133	11.9999
.)).	chrM:6579-6802(+)$1	1	6	10	11.9999
((..	chrM:6149-6355(+)$1	1	164	168	11.9999
((..	chr11:65350861-65351124(+)$1	1	22	26	11.9999
))).	chr2:11484091-11484339(-)$1	1	194	198	11.9999
....	chr16:23847341-23847639(+)$1	1	293	297	11.9999
.(((	chr3:133475025-133475269(+)$1	1	95	99	11.9999
..).	chr15:41786026-41786293(+)$1	1	116	120	11.9999
((..	chr16:89043056-89043321(-)$1	1	2	6	11.9999
)...	chr7:155090082-155090329(+)$1	1	61	65	11.9999
....	chr11:64013976-64014219(-)$1	1	142	146	11.9999
....	chrM:10586-10794(+)$1	1	35	39	11.9999
((..	chrM:6184-6400(+)$1	1	129	133	11.9999
.(((	chr1:1155984-1156227(-)$1	1	56	60	11.9999
....	chrM:14989-15210(+)$1	1	216	220	11.9999
((..	chrM:6145-6349(+)$1	1	168	172	11.9999
.)))	chr3:13418913-13419165(-)$1	1	39	43	11.9999
..((	chr6:170893429-170893724(-)$1	1	15	19	11.9999
.(((	chr2:21228768-21229014(-)$1	1	93	97	11.9999
....	chrM:7139-7353(+)$1	1	42	46	11.9999
(..(	chr5:154135174-154135469(+)$1	1	38	42	11.9999
...(	chr6:170893553-170893810(-)$1	1	101	105	11.9999
....	chr19:14552003-14552274(+)$1	1	216	220	11.9999
((..	chrM:6160-6368(+)$1	1	153	157	11.9999
))))	chr2:216248669-216248910(-)$1	1	233	237	11.9999
((.(	chr3:186330821-186331092(+)$1	1	8	12	11.9999
))).	chr7:2394563-2394902(+)$1	1	313	317	11.9999
....	chrM:14747-14971(+)$1	1	5	9	11.9999
))))	chr11:65349452-65349687(+)$1	1	133	137	11.9999
....	chrM:12501-12713(+)$1	1	47	51	11.9999
....	chrM:7946-8174(+)$1	1	11	15	11.9999
))..	chr16:28877636-28877877(+)$1	1	46	50	11.9999
....	chrM:6095-6345(+)$1	1	22	26	11.9999

#PSSM
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	
A : 0.98	a : 0.01	

#score	863.9999999999994
#seq	72
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_transcript_m1_run2.nuc.txt

#NT
AGGAGAUG	chr5:132097121-132097414(-)$1	293	219	227	13.0000
AGAAGUGG	chr19:18958455-18958732(+)$1	277	147	155	14.9999
CGAAGAGG	chr21:34143880-34144152(-)$1	272	220	228	15.2500
GGAAGAGG	chr16:71956392-71956653(+)$1	261	59	67	15.6250
GGAAGAGG	chr6:90363801-90364067(-)$1	266	66	74	15.6250
AGGAGAGG	chr21:47695018-47695298(-)$1	280	131	139	15.5000
AGCAGAUG	chr8:41469605-41469873(+)$1	268	7	15	13.0000
AGAAGAAG	chr17:42288087-42288374(-)$1	287	204	212	16.6250
AGAAGAUG	chr13:96293567-96293883(-)$1	316	279	287	16.7500
AGAAGAAG	chr20:62612461-62612721(+)$1	260	144	152	16.6250
AGUAGAGG	chr1:20230659-20230972(+)$1	313	186	194	15.2500
AGAAGAGG	chr2:191161508-191161781(-)$1	273	128	136	19.2500
agaugagg	chr10:102286716-102286932(-)$1	216	33	41	14.7500
AGAAGAGA	chr2:160605059-160605304(+)$1	245	14	22	14.8749
UGAAGAGg	chr17:42284484-42284785(-)$1	301	52	60	15.3750
AGAAGAGG	chr3:52723004-52723285(+)$1	281	159	167	19.2500
AGAAGAGC	chr7:36491987-36492232(+)$1	245	122	130	15.1249
agaagaag	chr4:174253076-174253362(-)$1	286	46	54	16.6250
AGAAGAGG	chr5:75991363-75991586(+)$1	223	30	38	19.2500
AGAAGUGG	chr2:219295431-219295692(+)$1	261	107	115	14.9999
GGAAGAGG	chr16:4920827-4921072(+)$1	245	23	31	15.6250
AGAAGAUG	chr2:27680963-27681189(-)$1	226	122	130	16.7500
AGAAGUGG	chrX:106367370-106367658(-)$1	288	115	123	14.9999
AGAAGAUG	chr15:59972339-59972608(-)$1	269	110	118	16.7500
AGAGGAGG	chr14:24686247-24686476(-)$1	229	117	125	14.8750
UGAAGAGG	chr16:72134235-72134480(+)$1	245	173	181	15.3750
AGAAGAAG	chr19:12790845-12791136(-)$1	291	1	9	16.6250
AGAAAAGG	chr16:28841148-28841424(+)$1	276	39	47	14.5000
AGCAGAGG	chr6:30609851-30610123(+)$1	272	7	15	15.5000
AGAAGAUG	chr9:35685330-35685559(-)$1	229	52	60	16.7500
AGAAGAGG	chr1:150198838-150199125(-)$1	287	140	148	19.2500
AGAAGAAG	chr20:42144678-42144919(+)$1	241	21	29	16.6250
AGCAGAGG	chr10:100185483-100185810(-)$1	327	70	78	15.5000
AGAAGAUG	chr3:43389029-43389300(+)$1	271	59	67	16.7500
AGAAGAGC	chr11:71729128-71729350(-)$1	222	57	65	15.1249
AGAAGAAG	chr2:63091885-63092141(+)$1	256	203	211	16.6250
GGAAGAGG	chr19:5220175-5220447(-)$1	272	170	178	15.6250
AGAAGAGC	chr7:36492046-36492293(+)$1	247	63	71	15.1249
agaggagg	chr9:100777634-100777877(+)$1	243	9	17	14.8750

#otherMatches

#Struct PSSM
ee!!bb[e	chr1:39908350-39908626(+)$1	276	195	203	15.5000
]dddd:DD	chr5:132097121-132097414(-)$1	293	219	227	13.0000
ggggggg[	chr19:18958455-18958732(+)$1	277	147	155	14.9999
d'''''''	chr21:34143880-34144152(-)$1	272	220	228	15.2500
cc####a[	chr16:71956392-71956653(+)$1	261	59	67	15.6250
DD{CCCKK	chr6:90363801-90364067(-)$1	266	66	74	15.6250
dddd]a]c	chr21:47695018-47695298(-)$1	280	131	139	15.5000
HHHHHKKD	chr8:41469605-41469873(+)$1	268	7	15	13.0000
BB~~~~CC	chr17:42288087-42288374(-)$1	287	204	212	16.6250
>>>>>>hh	chr13:96293567-96293883(-)$1	316	279	287	16.7500
wwwwwwww	chr20:62612461-62612721(+)$1	260	144	152	16.6250
:::EEEEE	chr1:20230659-20230972(+)$1	313	186	194	15.2500
c"""dddd	chr2:191161508-191161781(-)$1	273	128	136	19.2500
ffffff]e	chr10:102286716-102286932(-)$1	216	33	41	14.7500
uuuuccc]	chr2:160605059-160605304(+)$1	245	14	22	14.8749
ccchhhhh	chr17:42284484-42284785(-)$1	301	52	60	15.3750
cc22eeee	chr3:52723004-52723285(+)$1	281	159	167	19.2500
b[ffffff	chr7:36491987-36492232(+)$1	245	122	130	15.1249
::::::::	chr4:174253076-174253362(-)$1	286	46	54	16.6250
::::eeee	chr5:75991363-75991586(+)$1	223	30	38	19.2500
dmmmmddd	chr2:219295431-219295692(+)$1	261	107	115	14.9999
bb22ccc]	chr16:4920827-4921072(+)$1	245	23	31	15.6250
bnnnnnbb	chr2:27680963-27681189(-)$1	226	122	130	16.7500
$$$$cccm	chrX:106367370-106367658(-)$1	288	115	123	14.9999
ggggggg>	chr15:59972339-59972608(-)$1	269	110	118	16.7500
JJJJJJJJ	chr14:24686247-24686476(-)$1	229	117	125	14.8750
8888ccc2	chr16:72134235-72134480(+)$1	245	173	181	15.3750
:::::::e	chr19:12790845-12791136(-)$1	291	1	9	16.6250
mmmmdddd	chr16:28841148-28841424(+)$1	276	39	47	14.5000
EEMMMMFF	chr6:30609851-30610123(+)$1	272	7	15	15.5000
{A{DDDDB	chr9:35685330-35685559(-)$1	229	52	60	16.7500
yyyyyyyy	chr1:150198838-150199125(-)$1	287	140	148	19.2500
::::::::	chr20:42144678-42144919(+)$1	241	21	29	16.6250
nhhhhhhh	chr10:100185483-100185810(-)$1	327	70	78	15.5000
::::::::	chr3:43389029-43389300(+)$1	271	59	67	16.7500
:::::DDD	chr11:71729128-71729350(-)$1	222	57	65	15.1249
GGGGGG::	chr2:63091885-63092141(+)$1	256	203	211	16.6250
GGGGGGGY	chr19:5220175-5220447(-)$1	272	170	178	15.6250
GG}BBYYC	chr7:36492046-36492293(+)$1	247	63	71	15.1249
::::EEEE	chr9:100777634-100777877(+)$1	243	9	17	14.8750

#DB
((..((.(	chr1:39908350-39908626(+)$1	1	195	203	15.5000
.)))).))	chr5:132097121-132097414(-)$1	1	219	227	13.0000
(((((((.	chr19:18958455-18958732(+)$1	1	147	155	14.9999
(.......	chr21:34143880-34144152(-)$1	1	220	228	15.2500
((....(.	chr16:71956392-71956653(+)$1	1	59	67	15.6250
((.(((..	chr6:90363801-90364067(-)$1	1	66	74	15.6250
)))).).)	chr21:47695018-47695298(-)$1	1	131	139	15.5000
(((((..(	chr8:41469605-41469873(+)$1	1	7	15	13.0000
))....))	chr17:42288087-42288374(-)$1	1	204	212	16.6250
......))	chr13:96293567-96293883(-)$1	1	279	287	16.7500
........	chr20:62612461-62612721(+)$1	1	144	152	16.6250
...(((((	chr1:20230659-20230972(+)$1	1	186	194	15.2500
(...((((	chr2:191161508-191161781(-)$1	1	128	136	19.2500
)))))).)	chr10:102286716-102286932(-)$1	1	33	41	14.7500
....))).	chr2:160605059-160605304(+)$1	1	14	22	14.8749
))))))))	chr17:42284484-42284785(-)$1	1	52	60	15.3750
))..))))	chr3:52723004-52723285(+)$1	1	159	167	19.2500
(.((((((	chr7:36491987-36492232(+)$1	1	122	130	15.1249
........	chr4:174253076-174253362(-)$1	1	46	54	16.6250
....((((	chr5:75991363-75991586(+)$1	1	30	38	19.2500
(....)))	chr2:219295431-219295692(+)$1	1	107	115	14.9999
))..))).	chr16:4920827-4921072(+)$1	1	23	31	15.6250
(.....))	chr2:27680963-27681189(-)$1	1	122	130	16.7500
....(((.	chrX:106367370-106367658(-)$1	1	115	123	14.9999
))))))).	chr15:59972339-59972608(-)$1	1	110	118	16.7500
))))))))	chr14:24686247-24686476(-)$1	1	117	125	14.8750
....))).	chr16:72134235-72134480(+)$1	1	173	181	15.3750
.......(	chr19:12790845-12791136(-)$1	1	1	9	16.6250
....))))	chr16:28841148-28841424(+)$1	1	39	47	14.5000
((....((	chr6:30609851-30610123(+)$1	1	7	15	15.5000
.(.(((((	chr9:35685330-35685559(-)$1	1	52	60	16.7500
........	chr1:150198838-150199125(-)$1	1	140	148	19.2500
........	chr20:42144678-42144919(+)$1	1	21	29	16.6250
.)))))))	chr10:100185483-100185810(-)$1	1	70	78	15.5000
........	chr3:43389029-43389300(+)$1	1	59	67	16.7500
.....)))	chr11:71729128-71729350(-)$1	1	57	65	15.1249
))))))..	chr2:63091885-63092141(+)$1	1	203	211	16.6250
))))))).	chr19:5220175-5220447(-)$1	1	170	178	15.6250
)).))..)	chr7:36492046-36492293(+)$1	1	63	71	15.1249
....((((	chr9:100777634-100777877(+)$1	1	9	17	14.8750

#PSSM
A : 0.75	G : 0.10	a : 0.07	U : 0.05	C : 0.02	
G : 0.92	g : 0.07	
A : 0.75	G : 0.07	C : 0.07	a : 0.07	U : 0.02	
A : 0.90	u : 0.02	a : 0.02	G : 0.02	g : 0.02	
G : 0.90	g : 0.07	A : 0.02	
A : 0.85	U : 0.07	a : 0.07	
G : 0.62	U : 0.17	A : 0.12	g : 0.05	a : 0.02	
G : 0.80	g : 0.10	C : 0.07	A : 0.02	

#score	636.5
#seq	40
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_UTR_m2_run2.nuc.txt

#NT
ucaaguguaguaucuguucuuaucaguuuaauaucugauacguccucuauccgaggacaauauauuaaauggauuuuuggaaauaggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugca	chr11:62609114-62609315(-)$1	201	60	199	417.0000
ucaaguguaguaucuguucuuaucaguuuaauaucugauacguccucuauccgaggacaauauauuaaauggauuuuuggaaauaggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugca	chr11:62609093-62609310(-)$1	217	55	194	417.0000

#otherMatches

#Struct PSSM
333dddd22ffffff:::::ffffffqqqqqqqqffffff:ffffffnnnnnffffff:::::::::::::::::::::::::::dddd[dddd"""ddddmmmmdddd]dddddddd::ffffff[eeeeevvvvvvv	chr11:62609082-62609293(-)$1	211	38	177	417.0000
:::A{IIIIIIIII{A{BB:ffffffqqqqqqqqffffff:ffffffnnnnnffffff:::::::::::::::::::::::::::dddd[dddd"""ddddmmmmdddd]dddddddd:::::::BB}A}IIIIIIIII	chr11:62609114-62609315(-)$1	201	60	199	417.0000
BBNNNNNFFFFFF:::::::ffffffqqqqqqqqffffff:ffffffnnnnnffffff:::FFFFFF~~~~BB}FFFFFF:::::dddd[dddd"""ddddmmmmdddd]dddddddd::ffffff[eeeeevvvvvvv	chr11:62609093-62609310(-)$1	217	55	194	417.0000

#DB
...))))..)))))).....((((((........)))))).((((((.....))))))...........................((((.((((...((((....)))).))))))))..((((((.(((((.......	chr11:62609082-62609293(-)$1	1	38	177	417.0000
...(.(((((((((.(.((.((((((........)))))).((((((.....))))))...........................((((.((((...((((....)))).)))))))).......)).).)))))))))	chr11:62609114-62609315(-)$1	1	60	199	417.0000
((.....((((((.......((((((........)))))).((((((.....))))))...))))))....)).)))))).....((((.((((...((((....)))).))))))))..((((((.(((((.......	chr11:62609093-62609310(-)$1	1	55	194	417.0000

#PSSM
u : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	

#score	1251.0
#seq	3
#width	139
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_UTR_m2_run2.nuc.txt

#NT
AGGCAGAAG	chr5:73935902-73936220(-)$1	318	271	280	18.1111
aagaagagg	chr17:45912165-45912375(+)$1	210	40	49	17.5555
UGGCAGAGG	chr17:29632109-29632459(+)$1	350	142	151	17.0000
AGGCAGAGG	chr3:187454313-187454561(-)$1	248	108	117	20.8888
AGACAGAGG	chr20:36146112-36146375(-)$1	263	157	166	17.0000
AGGCAGAGA	chr3:41241454-41241736(+)$1	282	166	175	16.9999
aagaagagg	chr17:45912175-45912393(+)$1	218	30	39	17.5555
aagaagagg	chr17:45912161-45912365(+)$1	204	44	53	17.5555

#otherMatches

#Struct PSSM
teeeee22a	chr5:73935748-73936004(-)$1	256	55	64	18.1111
teeeee22a	chr5:73935902-73936220(-)$1	318	271	280	18.1111
ffbba[eee	chr17:45912165-45912375(+)$1	210	40	49	17.5555
I::ccc[cc	chr17:29632109-29632459(+)$1	350	142	151	17.0000
b]ccceeee	chr3:187454313-187454561(-)$1	248	108	117	20.8888
OODDDD::e	chr20:36146112-36146375(-)$1	263	157	166	17.0000
CC}BB}DDD	chr3:41241454-41241736(+)$1	282	166	175	16.9999
ffbba[eee	chr17:45912175-45912393(+)$1	218	30	39	17.5555
mmccc]fff	chr17:45912161-45912365(+)$1	204	44	53	17.5555

#DB
.)))))..)	chr5:73935748-73936004(-)$1	1	55	64	18.1111
.)))))..)	chr5:73935902-73936220(-)$1	1	271	280	18.1111
(((((.(((	chr17:45912165-45912375(+)$1	1	40	49	17.5555
(..(((.((	chr17:29632109-29632459(+)$1	1	142	151	17.0000
).)))))))	chr3:187454313-187454561(-)$1	1	108	117	20.8888
..((((..(	chr20:36146112-36146375(-)$1	1	157	166	17.0000
)).)).)))	chr3:41241454-41241736(+)$1	1	166	175	16.9999
(((((.(((	chr17:45912175-45912393(+)$1	1	30	39	17.5555
..))).)))	chr17:45912161-45912365(+)$1	1	44	53	17.5555

#PSSM
A : 0.55	a : 0.33	U : 0.11	
G : 0.66	a : 0.33	
G : 0.55	g : 0.33	A : 0.11	
C : 0.66	a : 0.33	
A : 0.66	a : 0.33	
G : 0.66	g : 0.33	
A : 0.66	a : 0.33	
G : 0.44	g : 0.33	A : 0.22	
G : 0.55	g : 0.33	A : 0.11	

#score	160.77777777777777
#seq	9
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_transcript_m2_run2.nuc.txt

#NT
CCUGG	chr5:643487-643784(+)$1	297	96	101	14.9999
CCUGG	chr16:841749-841987(+)$1	238	32	37	14.9999
CCUGG	chr14:105812523-105812854(+)$1	331	46	51	14.9999
CCUGG	chr7:120635122-120635415(+)$1	293	26	31	14.9999
CCUGG	chr1:110169857-110170125(+)$1	268	4	9	14.9999
CCUGG	chr17:76123890-76124129(-)$1	239	179	184	14.9999
CCUGG	chr8:145693144-145693379(+)$1	235	8	13	14.9999
CCUGG	chr22:21343985-21344227(+)$1	242	185	190	14.9999
CCUGG	chr12:56554179-56554472(+)$1	293	4	9	14.9999
CCUGG	chr7:1477966-1478217(-)$1	251	11	16	14.9999
CCUGG	chr14:73720114-73720415(+)$1	301	72	77	14.9999
CCUGG	chr14:105240912-105241223(-)$1	311	91	96	14.9999
CCUGG	chr6:26597542-26597854(+)$1	312	50	55	14.9999
CCUGG	chr21:47957944-47958277(+)$1	333	321	326	14.9999
CCUGG	chr11:62382690-62383044(-)$1	354	271	276	14.9999
CCUGG	chr19:49607383-49607643(+)$1	260	192	197	14.9999
CCUGG	chr1:52825790-52826170(-)$1	380	194	199	14.9999
CCUGG	chr9:131025061-131025383(-)$1	322	282	287	14.9999
CCUGG	chr1:28907715-28907950(-)$1	235	65	70	14.9999
CCUGG	chr11:991228-991512(+)$1	284	160	165	14.9999
CCUGG	chr16:841908-842181(+)$1	273	150	155	14.9999
CCUGG	chr21:45733942-45734191(+)$1	249	19	24	14.9999
CCUGG	chr14:105814565-105814797(+)$1	232	124	129	14.9999
CCUGG	chr14:24032936-24033268(-)$1	332	126	131	14.9999
CCUGG	chr22:49914672-49914929(-)$1	257	138	143	14.9999
CCUGG	chr11:378444-378700(+)$1	256	9	14	14.9999
CCUGG	chr2:132268331-132268588(+)$1	257	200	205	14.9999
CCUGG	chr1:145439405-145439657(+)$1	252	213	218	14.9999
ccugg	chr2:97559810-97560053(-)$1	243	58	63	14.9999
CCUGG	chr7:72419952-72420199(-)$1	247	28	33	14.9999
ccugg	chr3:15863862-15864170(-)$1	308	186	191	14.9999
ccugg	chr2:97559854-97560064(-)$1	210	69	74	14.9999
ccugg	chr6:28090280-28090553(-)$1	273	199	204	14.9999
ccugg	chr18:8721436-8721706(+)$1	270	236	241	14.9999
CCUGG	chr7:4751596-4751837(+)$1	241	224	229	14.9999
CCUGG	chr2:130921208-130921470(-)$1	262	12	17	14.9999
CCUGG	chr2:240944354-240944601(-)$1	247	131	136	14.9999
CCUGG	chr19:10463294-10463562(-)$1	268	136	141	14.9999
CCUGG	chr12:133295692-133295941(+)$1	249	193	198	14.9999
ccugg	chr12:122212994-122213251(+)$1	257	134	139	14.9999
CCUGG	chr17:27444208-27444489(-)$1	281	51	56	14.9999
CCUGG	chr4:170581536-170581800(+)$1	264	183	188	14.9999
CCUGG	chr11:374403-374657(+)$1	254	157	162	14.9999
CCUGG	chr16:30092276-30092597(+)$1	321	5	10	14.9999
CCUGG	chr21:47958187-47958438(+)$1	251	78	83	14.9999
CCUGG	chr9:140160812-140161118(+)$1	306	22	27	14.9999
CCUGG	chrX:151125156-151125471(-)$1	315	35	40	14.9999
CCUGG	chr3:128213109-128213388(+)$1	279	189	194	14.9999
CCUGG	chr9:95476117-95476376(-)$1	259	212	217	14.9999
CCUGG	chr3:47044968-47045269(+)$1	301	131	136	14.9999
CCUGG	chr8:142432845-142433056(+)$1	211	103	108	14.9999
ccugg	chr1:212933709-212933993(-)$1	284	82	87	14.9999
CCUGG	chr3:12944187-12944440(-)$1	253	241	246	14.9999
CCUGG	chr19:54970414-54970640(+)$1	226	108	113	14.9999
CCUGG	chr21:45758348-45758628(-)$1	280	68	73	14.9999
CCUGG	chrX:9535394-9535661(+)$1	267	122	127	14.9999
CCUGG	chr7:5569872-5570182(-)$1	310	177	182	14.9999
CCUGG	chr15:27339060-27339319(+)$1	259	241	246	14.9999
ccugg	chr17:80802002-80802263(+)$1	261	117	122	14.9999
ccugg	chr9:130987718-130988022(+)$1	304	13	18	14.9999
CCUGG	chr17:80807541-80807807(+)$1	266	131	136	14.9999
CCUGG	chr7:99002158-99002388(-)$1	230	92	97	14.9999
ccugg	chr7:110933785-110934091(-)$1	306	293	298	14.9999
CCUGG	chr7:4757117-4757380(+)$1	263	27	32	14.9999

#otherMatches

#Struct PSSM
CCC}B	chr22:20110915-20111157(+)$1	242	210	215	14.9999
CC{JJ	chr5:643487-643784(+)$1	297	96	101	14.9999
lllhh	chr16:841749-841987(+)$1	238	32	37	14.9999
=====	chr14:105812523-105812854(+)$1	331	46	51	14.9999
:::dd	chr7:120635122-120635415(+)$1	293	26	31	14.9999
e!!a[	chr1:110169857-110170125(+)$1	268	4	9	14.9999
FZZZE	chr17:76123890-76124129(-)$1	239	179	184	14.9999
ddd[a	chr8:145693144-145693379(+)$1	235	8	13	14.9999
ggggg	chr22:21343985-21344227(+)$1	242	185	190	14.9999
eeee[	chr12:56554179-56554472(+)$1	293	4	9	14.9999
JJJJJ	chr7:1477966-1478217(-)$1	251	11	16	14.9999
444ee	chr14:73720114-73720415(+)$1	301	72	77	14.9999
ccmmm	chr14:105240912-105241223(-)$1	311	91	96	14.9999
fff]c	chr6:26597542-26597854(+)$1	312	50	55	14.9999
ccc]f	chr21:47957944-47958277(+)$1	333	321	326	14.9999
ygggg	chr11:62382690-62383044(-)$1	354	271	276	14.9999
::CCC	chr19:49607383-49607643(+)$1	260	192	197	14.9999
iiiii	chr1:52825790-52826170(-)$1	380	194	199	14.9999
YYCCC	chr9:131025061-131025383(-)$1	322	282	287	14.9999
ihhhh	chr1:28907715-28907950(-)$1	235	65	70	14.9999
ffff2	chr11:991228-991512(+)$1	284	160	165	14.9999
eeeee	chr16:841908-842181(+)$1	273	150	155	14.9999
eeeee	chr21:45733942-45734191(+)$1	249	19	24	14.9999
gggg!	chr14:105814565-105814797(+)$1	232	124	129	14.9999
fccco	chr14:24032936-24033268(-)$1	332	126	131	14.9999
eeeee	chr22:49914672-49914929(-)$1	257	138	143	14.9999
IIII:	chr11:378444-378700(+)$1	256	9	14	14.9999
eemmm	chr2:132268331-132268588(+)$1	257	200	205	14.9999
dddee	chr1:145439405-145439657(+)$1	252	213	218	14.9999
ggggg	chr2:97559810-97560053(-)$1	243	58	63	14.9999
BKKDD	chr7:72419952-72420199(-)$1	247	28	33	14.9999
oooee	chr3:15863862-15864170(-)$1	308	186	191	14.9999
ggggg	chr2:97559854-97560064(-)$1	210	69	74	14.9999
neeee	chr6:28090280-28090553(-)$1	273	199	204	14.9999
rrccc	chr18:8721436-8721706(+)$1	270	236	241	14.9999
lllgg	chr7:4751596-4751837(+)$1	241	224	229	14.9999
$$$cc	chr2:130921208-130921470(-)$1	262	12	17	14.9999
EE::J	chr2:240944354-240944601(-)$1	247	131	136	14.9999
ddccc	chr19:10463294-10463562(-)$1	268	136	141	14.9999
GGGDD	chr12:133295692-133295941(+)$1	249	193	198	14.9999
ee%%%	chr12:122212994-122213251(+)$1	257	134	139	14.9999
!ffff	chr17:27444208-27444489(-)$1	281	51	56	14.9999
:::EE	chr4:170581536-170581800(+)$1	264	183	188	14.9999
FFF}A	chr11:374403-374657(+)$1	254	157	162	14.9999
IIIII	chr16:30092276-30092597(+)$1	321	5	10	14.9999
nnna]	chr21:47958187-47958438(+)$1	251	78	83	14.9999
HHHHH	chr9:140160812-140161118(+)$1	306	22	27	14.9999
ccfff	chrX:151125156-151125471(-)$1	315	35	40	14.9999
ee]dd	chr3:128213109-128213388(+)$1	279	189	194	14.9999
bb22i	chr9:95476117-95476376(-)$1	259	212	217	14.9999
eee::	chr3:47044968-47045269(+)$1	301	131	136	14.9999
eee::	chr8:142432845-142433056(+)$1	211	103	108	14.9999
fffff	chr1:212933709-212933993(-)$1	284	82	87	14.9999
H}CCC	chr3:12944187-12944440(-)$1	253	241	246	14.9999
=====	chr19:54970414-54970640(+)$1	226	108	113	14.9999
ccc]d	chr21:45758348-45758628(-)$1	280	68	73	14.9999
ooodd	chrX:9535394-9535661(+)$1	267	122	127	14.9999
fffa[	chr7:5569872-5570182(-)$1	310	177	182	14.9999
FFF}C	chr15:27339060-27339319(+)$1	259	241	246	14.9999
fffff	chr17:80802002-80802263(+)$1	261	117	122	14.9999
eeeee	chr9:130987718-130988022(+)$1	304	13	18	14.9999
::DDD	chr17:80807541-80807807(+)$1	266	131	136	14.9999
fffHH	chr7:99002158-99002388(-)$1	230	92	97	14.9999
CCYYC	chr7:110933785-110934091(-)$1	306	293	298	14.9999
NNNCC	chr7:4757117-4757380(+)$1	263	27	32	14.9999

#DB
))).)	chr22:20110915-20111157(+)$1	1	210	215	14.9999
((.((	chr5:643487-643784(+)$1	1	96	101	14.9999
...))	chr16:841749-841987(+)$1	1	32	37	14.9999
(((((	chr14:105812523-105812854(+)$1	1	46	51	14.9999
...((	chr7:120635122-120635415(+)$1	1	26	31	14.9999
(..(.	chr1:110169857-110170125(+)$1	1	4	9	14.9999
)...)	chr17:76123890-76124129(-)$1	1	179	184	14.9999
(((.(	chr8:145693144-145693379(+)$1	1	8	13	14.9999
)))))	chr22:21343985-21344227(+)$1	1	185	190	14.9999
((((.	chr12:56554179-56554472(+)$1	1	4	9	14.9999
(((((	chr7:1477966-1478217(-)$1	1	11	16	14.9999
...))	chr14:73720114-73720415(+)$1	1	72	77	14.9999
((...	chr14:105240912-105241223(-)$1	1	91	96	14.9999
))).)	chr6:26597542-26597854(+)$1	1	50	55	14.9999
))).)	chr21:47957944-47958277(+)$1	1	321	326	14.9999
.))))	chr11:62382690-62383044(-)$1	1	271	276	14.9999
..)))	chr19:49607383-49607643(+)$1	1	192	197	14.9999
)))))	chr1:52825790-52826170(-)$1	1	194	199	14.9999
..)))	chr9:131025061-131025383(-)$1	1	282	287	14.9999
)))))	chr1:28907715-28907950(-)$1	1	65	70	14.9999
)))).	chr11:991228-991512(+)$1	1	160	165	14.9999
(((((	chr16:841908-842181(+)$1	1	150	155	14.9999
(((((	chr21:45733942-45734191(+)$1	1	19	24	14.9999
((((.	chr14:105814565-105814797(+)$1	1	124	129	14.9999
((((.	chr14:24032936-24033268(-)$1	1	126	131	14.9999
)))))	chr22:49914672-49914929(-)$1	1	138	143	14.9999
((((.	chr11:378444-378700(+)$1	1	9	14	14.9999
((...	chr2:132268331-132268588(+)$1	1	200	205	14.9999
)))))	chr1:145439405-145439657(+)$1	1	213	218	14.9999
(((((	chr2:97559810-97560053(-)$1	1	58	63	14.9999
(..((	chr7:72419952-72420199(-)$1	1	28	33	14.9999
...))	chr3:15863862-15864170(-)$1	1	186	191	14.9999
(((((	chr2:97559854-97560064(-)$1	1	69	74	14.9999
.))))	chr6:28090280-28090553(-)$1	1	199	204	14.9999
..)))	chr18:8721436-8721706(+)$1	1	236	241	14.9999
...))	chr7:4751596-4751837(+)$1	1	224	229	14.9999
...((	chr2:130921208-130921470(-)$1	1	12	17	14.9999
))..(	chr2:240944354-240944601(-)$1	1	131	136	14.9999
(((((	chr19:10463294-10463562(-)$1	1	136	141	14.9999
)))))	chr12:133295692-133295941(+)$1	1	193	198	14.9999
((...	chr12:122212994-122213251(+)$1	1	134	139	14.9999
.((((	chr17:27444208-27444489(-)$1	1	51	56	14.9999
...))	chr4:170581536-170581800(+)$1	1	183	188	14.9999
))).)	chr11:374403-374657(+)$1	1	157	162	14.9999
(((((	chr16:30092276-30092597(+)$1	1	5	10	14.9999
...).	chr21:47958187-47958438(+)$1	1	78	83	14.9999
(((((	chr9:140160812-140161118(+)$1	1	22	27	14.9999
))(((	chrX:151125156-151125471(-)$1	1	35	40	14.9999
)).))	chr3:128213109-128213388(+)$1	1	189	194	14.9999
))..)	chr9:95476117-95476376(-)$1	1	212	217	14.9999
)))..	chr3:47044968-47045269(+)$1	1	131	136	14.9999
)))..	chr8:142432845-142433056(+)$1	1	103	108	14.9999
(((((	chr1:212933709-212933993(-)$1	1	82	87	14.9999
).)))	chr3:12944187-12944440(-)$1	1	241	246	14.9999
(((((	chr19:54970414-54970640(+)$1	1	108	113	14.9999
))).)	chr21:45758348-45758628(-)$1	1	68	73	14.9999
...))	chrX:9535394-9535661(+)$1	1	122	127	14.9999
)))(.	chr7:5569872-5570182(-)$1	1	177	182	14.9999
))).)	chr15:27339060-27339319(+)$1	1	241	246	14.9999
(((((	chr17:80802002-80802263(+)$1	1	117	122	14.9999
(((((	chr9:130987718-130988022(+)$1	1	13	18	14.9999
..)))	chr17:80807541-80807807(+)$1	1	131	136	14.9999
)))((	chr7:99002158-99002388(-)$1	1	92	97	14.9999
))..)	chr7:110933785-110934091(-)$1	1	293	298	14.9999
...((	chr7:4757117-4757380(+)$1	1	27	32	14.9999

#PSSM
C : 0.84	c : 0.15	
C : 0.84	c : 0.15	
U : 0.84	u : 0.15	
G : 0.84	g : 0.15	
G : 0.84	g : 0.15	

#score	974.9999999999995
#seq	65
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_transcript_m2_run1.nuc.txt

#NT
GCU	chr3:128211998-128212295(+)$1	297	3	6	8.9999
GCU	chr14:102502900-102503210(+)$1	310	8	11	8.9999
GCU	chr19:49468645-49468850(+)$1	205	25	28	8.9999
gcu	chr3:196557856-196558112(+)$1	256	31	34	8.9999
GCU	chr3:187462044-187462304(-)$1	260	53	56	8.9999
GCU	chr17:62498805-62499068(-)$1	263	52	55	8.9999
GCU	chr3:179085804-179086096(+)$1	292	30	33	8.9999
GCU	chr2:74441398-74441624(+)$1	226	10	13	8.9999
GCU	chr19:49605478-49605717(+)$1	239	8	11	8.9999
GCU	chr1:228285713-228285944(+)$1	231	37	40	8.9999
gcu	chr7:57710558-57710820(-)$1	262	124	127	8.9999
GCU	chrX:77380845-77381096(+)$1	251	66	69	8.9999
GCU	chr3:41241472-41241751(+)$1	279	17	20	8.9999
GCU	chr4:71852968-71853206(+)$1	238	200	203	8.9999
gcu	chr2:15673031-15673279(-)$1	248	31	34	8.9999
GCU	chr2:232574337-232574582(+)$1	245	41	44	8.9999
GCU	chr3:12546657-12546911(+)$1	254	213	216	8.9999
GCU	chr4:77968273-77968497(-)$1	224	23	26	8.9999
GCU	chr4:1241269-1241510(-)$1	241	23	26	8.9999
GCU	chr16:1413934-1414179(-)$1	245	24	27	8.9999
GCU	chr14:69254632-69254926(-)$1	294	252	255	8.9999
GCU	chr2:70455270-70455552(-)$1	282	26	29	8.9999
GCU	chr19:1258438-1258680(+)$1	242	145	148	8.9999
GCU	chr3:150263387-150263606(-)$1	219	31	34	8.9999
GCU	chr10:71989910-71990176(-)$1	266	124	127	8.9999
GCU	chr10:65225503-65225754(-)$1	251	44	47	8.9999
GCU	chr16:72138101-72138357(+)$1	256	0	3	8.9999
GCU	chr8:42881413-42881678(+)$1	265	187	190	8.9999
GCU	chr3:50097280-50097561(+)$1	281	11	14	8.9999
GCU	chr7:139790050-139790349(-)$1	299	90	93	8.9999
GCU	chr3:151986839-151987111(+)$1	272	74	77	8.9999
GCU	chr6:47471100-47471352(+)$1	252	3	6	8.9999
GCU	chr7:149977275-149977532(-)$1	257	96	99	8.9999
GCU	chr2:54166913-54167172(-)$1	259	20	23	8.9999
gcu	chr8:48890269-48890487(+)$1	218	14	17	8.9999
gcu	chr6:122803330-122803583(+)$1	253	39	42	8.9999
GCU	chr5:65459667-65459943(+)$1	276	4	7	8.9999
GCU	chr7:150930135-150930407(+)$1	272	3	6	8.9999
GCU	chr2:55255211-55255431(-)$1	220	3	6	8.9999
GCU	chr1:213061813-213062068(+)$1	255	16	19	8.9999
GCU	chr3:31658412-31658658(+)$1	246	21	24	8.9999
GCU	chr19:47113240-47113460(+)$1	220	34	37	8.9999
GCU	chr9:96441079-96441337(+)$1	258	18	21	8.9999
gcu	chr4:68240-68460(+)$1	220	35	38	8.9999
GCU	chr7:139060338-139060555(+)$1	217	55	58	8.9999
GCU	chr6:64283144-64283446(+)$1	302	111	114	8.9999
GCU	chr17:42283862-42284080(-)$1	218	17	20	8.9999
GCU	chr4:71840922-71841155(+)$1	233	185	188	8.9999
gcu	chr12:72003769-72003996(-)$1	227	80	83	8.9999
GCU	chr13:95813295-95813554(-)$1	259	78	81	8.9999
GCU	chr5:10679312-10679568(-)$1	256	7	10	8.9999
GCU	chr1:21113155-21113417(-)$1	262	24	27	8.9999
GCU	chr10:43902938-43903162(-)$1	224	39	42	8.9999
gcu	chr10:135219709-135219966(+)$1	257	6	9	8.9999
GCU	chr22:50030298-50030536(-)$1	238	101	104	8.9999
GCU	chr12:133134743-133135018(+)$1	275	40	43	8.9999
GCU	chr15:72496042-72496291(-)$1	249	43	46	8.9999
GCU	chr7:2403410-2403683(+)$1	273	1	4	8.9999
GCU	chr6:86352157-86352403(-)$1	246	24	27	8.9999
GCU	chr16:14645664-14645942(-)$1	278	141	144	8.9999
GCU	chr3:9848129-9848368(+)$1	239	43	46	8.9999
GCU	chr5:126172521-126172787(+)$1	266	139	142	8.9999
GCU	chr3:187457336-187457610(-)$1	274	6	9	8.9999
GCU	chr1:29221083-29221341(+)$1	258	34	37	8.9999
GCU	chr7:6502419-6502634(-)$1	215	102	105	8.9999
GCU	chr19:1408710-1408940(+)$1	230	37	40	8.9999
GCU	chr1:26227292-26227510(-)$1	218	107	110	8.9999
gcu	chr3:100452045-100452300(+)$1	255	5	8	8.9999
GCU	chrX:13346900-13347156(+)$1	256	34	37	8.9999
GCU	chr4:83765399-83765633(-)$1	234	25	28	8.9999
GCU	chr4:71847766-71848030(+)$1	264	19	22	8.9999
GCU	chr3:148772652-148772928(-)$1	276	61	64	8.9999
gcu	chr22:20069111-20069358(+)$1	247	72	75	8.9999
gcu	chr3:187462933-187463173(-)$1	240	0	3	8.9999
GCU	chr1:160190066-160190327(-)$1	261	54	57	8.9999
GCU	chr3:141622386-141622659(+)$1	273	85	88	8.9999
GCU	chr15:60639514-60639792(-)$1	278	5	8	8.9999
GCU	chr21:15857710-15857955(-)$1	245	9	12	8.9999
GCU	chr19:47731627-47731908(-)$1	281	16	19	8.9999
GCU	chr7:2163057-2163322(-)$1	265	12	15	8.9999
gcu	chr10:72435032-72435290(+)$1	258	7	10	8.9999
GCU	chr9:80944762-80945028(+)$1	266	161	164	8.9999
GCU	chr16:18802930-18803160(-)$1	230	159	162	8.9999
GCU	chr17:79845633-79845845(-)$1	212	68	71	8.9999
GCU	chr12:133209114-133209330(-)$1	216	40	43	8.9999
GCU	chr10:70931630-70931896(+)$1	266	18	21	8.9999
gcu	chr12:69042152-69042396(+)$1	244	43	46	8.9999
GCU	chr6:57034417-57034660(+)$1	243	119	122	8.9999
GCU	chr5:175621238-175621530(-)$1	292	0	3	8.9999
GCU	chr1:113643031-113643310(+)$1	279	26	29	8.9999

#otherMatches

#Struct PSSM
:::	chr4:174090892-174091197(+)$1	305	14	17	8.9999
a[d	chr3:128211998-128212295(+)$1	297	3	6	8.9999
DDD	chr14:102502900-102503210(+)$1	310	8	11	8.9999
bb(	chr19:49468645-49468850(+)$1	205	25	28	8.9999
MMM	chr3:196557856-196558112(+)$1	256	31	34	8.9999
dd2	chr3:187462044-187462304(-)$1	260	53	56	8.9999
ggg	chr17:62498805-62499068(-)$1	263	52	55	8.9999
eed	chr3:179085804-179086096(+)$1	292	30	33	8.9999
ccc	chr2:74441398-74441624(+)$1	226	10	13	8.9999
ccc	chr19:49605478-49605717(+)$1	239	8	11	8.9999
yyy	chr1:228285713-228285944(+)$1	231	37	40	8.9999
EEE	chr7:57710558-57710820(-)$1	262	124	127	8.9999
fff	chrX:77380845-77381096(+)$1	251	66	69	8.9999
GG:	chr3:41241472-41241751(+)$1	279	17	20	8.9999
bbl	chr4:71852968-71853206(+)$1	238	200	203	8.9999
sss	chr2:15673031-15673279(-)$1	248	31	34	8.9999
fff	chr2:232574337-232574582(+)$1	245	41	44	8.9999
nnn	chr3:12546657-12546911(+)$1	254	213	216	8.9999
dhh	chr4:77968273-77968497(-)$1	224	23	26	8.9999
EEE	chr4:1241269-1241510(-)$1	241	23	26	8.9999
dqq	chr16:1413934-1414179(-)$1	245	24	27	8.9999
3a2	chr14:69254632-69254926(-)$1	294	252	255	8.9999
]bb	chr2:70455270-70455552(-)$1	282	26	29	8.9999
cc:	chr19:1258438-1258680(+)$1	242	145	148	8.9999
e44	chr3:150263387-150263606(-)$1	219	31	34	8.9999
LLF	chr10:71989910-71990176(-)$1	266	124	127	8.9999
hhh	chr10:65225503-65225754(-)$1	251	44	47	8.9999
:::	chr16:72138101-72138357(+)$1	256	0	3	8.9999
EYY	chr8:42881413-42881678(+)$1	265	187	190	8.9999
hhh	chr3:50097280-50097561(+)$1	281	11	14	8.9999
EEE	chr7:139790050-139790349(-)$1	299	90	93	8.9999
===	chr3:151986839-151987111(+)$1	272	74	77	8.9999
:::	chr6:47471100-47471352(+)$1	252	3	6	8.9999
:::	chr7:149977275-149977532(-)$1	257	96	99	8.9999
FFF	chr2:54166913-54167172(-)$1	259	20	23	8.9999
ddd	chr8:48890269-48890487(+)$1	218	14	17	8.9999
ooe	chr6:122803330-122803583(+)$1	253	39	42	8.9999
:::	chr5:65459667-65459943(+)$1	276	4	7	8.9999
:::	chr7:150930135-150930407(+)$1	272	3	6	8.9999
EE:	chr2:55255211-55255431(-)$1	220	3	6	8.9999
cc'	chr1:213061813-213062068(+)$1	255	16	19	8.9999
ggg	chr3:31658412-31658658(+)$1	246	21	24	8.9999
MMM	chr19:47113240-47113460(+)$1	220	34	37	8.9999
+++	chr9:96441079-96441337(+)$1	258	18	21	8.9999
JJJ	chr4:68240-68460(+)$1	220	35	38	8.9999
ccc	chr7:139060338-139060555(+)$1	217	55	58	8.9999
cll	chr6:64283144-64283446(+)$1	302	111	114	8.9999
pdd	chr17:42283862-42284080(-)$1	218	17	20	8.9999
cff	chr4:71840922-71841155(+)$1	233	185	188	8.9999
hhh	chr12:72003769-72003996(-)$1	227	80	83	8.9999
bbm	chr13:95813295-95813554(-)$1	259	78	81	8.9999
ddd	chr5:10679312-10679568(-)$1	256	7	10	8.9999
BB:	chr1:21113155-21113417(-)$1	262	24	27	8.9999
HHH	chr10:43902938-43903162(-)$1	224	39	42	8.9999
:::	chr10:135219709-135219966(+)$1	257	6	9	8.9999
bbf	chr22:50030298-50030536(-)$1	238	101	104	8.9999
fff	chr12:133134743-133135018(+)$1	275	40	43	8.9999
DBB	chr15:72496042-72496291(-)$1	249	43	46	8.9999
cc[	chr7:2403410-2403683(+)$1	273	1	4	8.9999
FFF	chr6:86352157-86352403(-)$1	246	24	27	8.9999
ee6	chr16:14645664-14645942(-)$1	278	141	144	8.9999
]bb	chr3:9848129-9848368(+)$1	239	43	46	8.9999
^^^	chr5:126172521-126172787(+)$1	266	139	142	8.9999
:::	chr3:187457336-187457610(-)$1	274	6	9	8.9999
III	chr1:29221083-29221341(+)$1	258	34	37	8.9999
fff	chr7:6502419-6502634(-)$1	215	102	105	8.9999
:::	chr19:1408710-1408940(+)$1	230	37	40	8.9999
ldd	chr1:26227292-26227510(-)$1	218	107	110	8.9999
:::	chr3:100452045-100452300(+)$1	255	5	8	8.9999
ggg	chrX:13346900-13347156(+)$1	256	34	37	8.9999
ddd	chr4:83765399-83765633(-)$1	234	25	28	8.9999
f[d	chr4:71847766-71848030(+)$1	264	19	22	8.9999
[bb	chr3:148772652-148772928(-)$1	276	61	64	8.9999
c77	chr22:20069111-20069358(+)$1	247	72	75	8.9999
bb[	chr3:187462933-187463173(-)$1	240	0	3	8.9999
cc:	chr1:160190066-160190327(-)$1	261	54	57	8.9999
d::	chr3:141622386-141622659(+)$1	273	85	88	8.9999
:::	chr15:60639514-60639792(-)$1	278	5	8	8.9999
ttt	chr21:15857710-15857955(-)$1	245	9	12	8.9999
GGG	chr19:47731627-47731908(-)$1	281	16	19	8.9999
fff	chr7:2163057-2163322(-)$1	265	12	15	8.9999
CCL	chr10:72435032-72435290(+)$1	258	7	10	8.9999
a!!	chr9:80944762-80945028(+)$1	266	161	164	8.9999
B}F	chr16:18802930-18803160(-)$1	230	159	162	8.9999
::=	chr17:79845633-79845845(-)$1	212	68	71	8.9999
BB{	chr12:133209114-133209330(-)$1	216	40	43	8.9999
ppp	chr10:70931630-70931896(+)$1	266	18	21	8.9999
iii	chr12:69042152-69042396(+)$1	244	43	46	8.9999
fff	chr6:57034417-57034660(+)$1	243	119	122	8.9999
bb[	chr5:175621238-175621530(-)$1	292	0	3	8.9999
FFF	chr1:113643031-113643310(+)$1	279	26	29	8.9999

#DB
...	chr4:174090892-174091197(+)$1	1	14	17	8.9999
(.(	chr3:128211998-128212295(+)$1	1	3	6	8.9999
(((	chr14:102502900-102503210(+)$1	1	8	11	8.9999
((.	chr19:49468645-49468850(+)$1	1	25	28	8.9999
...	chr3:196557856-196558112(+)$1	1	31	34	8.9999
)).	chr3:187462044-187462304(-)$1	1	53	56	8.9999
)))	chr17:62498805-62499068(-)$1	1	52	55	8.9999
(((	chr3:179085804-179086096(+)$1	1	30	33	8.9999
(((	chr2:74441398-74441624(+)$1	1	10	13	8.9999
)))	chr19:49605478-49605717(+)$1	1	8	11	8.9999
...	chr1:228285713-228285944(+)$1	1	37	40	8.9999
)))	chr7:57710558-57710820(-)$1	1	124	127	8.9999
(((	chrX:77380845-77381096(+)$1	1	66	69	8.9999
((.	chr3:41241472-41241751(+)$1	1	17	20	8.9999
((.	chr4:71852968-71853206(+)$1	1	200	203	8.9999
...	chr2:15673031-15673279(-)$1	1	31	34	8.9999
)))	chr2:232574337-232574582(+)$1	1	41	44	8.9999
...	chr3:12546657-12546911(+)$1	1	213	216	8.9999
(((	chr4:77968273-77968497(-)$1	1	23	26	8.9999
(((	chr4:1241269-1241510(-)$1	1	23	26	8.9999
(..	chr16:1413934-1414179(-)$1	1	24	27	8.9999
.).	chr14:69254632-69254926(-)$1	1	252	255	8.9999
.))	chr2:70455270-70455552(-)$1	1	26	29	8.9999
)).	chr19:1258438-1258680(+)$1	1	145	148	8.9999
)..	chr3:150263387-150263606(-)$1	1	31	34	8.9999
..(	chr10:71989910-71990176(-)$1	1	124	127	8.9999
)))	chr10:65225503-65225754(-)$1	1	44	47	8.9999
...	chr16:72138101-72138357(+)$1	1	0	3	8.9999
)..	chr8:42881413-42881678(+)$1	1	187	190	8.9999
(((	chr3:50097280-50097561(+)$1	1	11	14	8.9999
(((	chr7:139790050-139790349(-)$1	1	90	93	8.9999
)))	chr3:151986839-151987111(+)$1	1	74	77	8.9999
...	chr6:47471100-47471352(+)$1	1	3	6	8.9999
...	chr7:149977275-149977532(-)$1	1	96	99	8.9999
(((	chr2:54166913-54167172(-)$1	1	20	23	8.9999
(((	chr8:48890269-48890487(+)$1	1	14	17	8.9999
..)	chr6:122803330-122803583(+)$1	1	39	42	8.9999
...	chr5:65459667-65459943(+)$1	1	4	7	8.9999
...	chr7:150930135-150930407(+)$1	1	3	6	8.9999
((.	chr2:55255211-55255431(-)$1	1	3	6	8.9999
((.	chr1:213061813-213062068(+)$1	1	16	19	8.9999
(((	chr3:31658412-31658658(+)$1	1	21	24	8.9999
...	chr19:47113240-47113460(+)$1	1	34	37	8.9999
...	chr9:96441079-96441337(+)$1	1	18	21	8.9999
(((	chr4:68240-68460(+)$1	1	35	38	8.9999
(((	chr7:139060338-139060555(+)$1	1	55	58	8.9999
(..	chr6:64283144-64283446(+)$1	1	111	114	8.9999
.))	chr17:42283862-42284080(-)$1	1	17	20	8.9999
(((	chr4:71840922-71841155(+)$1	1	185	188	8.9999
)))	chr12:72003769-72003996(-)$1	1	80	83	8.9999
((.	chr13:95813295-95813554(-)$1	1	78	81	8.9999
(((	chr5:10679312-10679568(-)$1	1	7	10	8.9999
((.	chr1:21113155-21113417(-)$1	1	24	27	8.9999
(((	chr10:43902938-43903162(-)$1	1	39	42	8.9999
...	chr10:135219709-135219966(+)$1	1	6	9	8.9999
(((	chr22:50030298-50030536(-)$1	1	101	104	8.9999
(((	chr12:133134743-133135018(+)$1	1	40	43	8.9999
(((	chr15:72496042-72496291(-)$1	1	43	46	8.9999
((.	chr7:2403410-2403683(+)$1	1	1	4	8.9999
(((	chr6:86352157-86352403(-)$1	1	24	27	8.9999
)).	chr16:14645664-14645942(-)$1	1	141	144	8.9999
.))	chr3:9848129-9848368(+)$1	1	43	46	8.9999
...	chr5:126172521-126172787(+)$1	1	139	142	8.9999
...	chr3:187457336-187457610(-)$1	1	6	9	8.9999
(((	chr1:29221083-29221341(+)$1	1	34	37	8.9999
(((	chr7:6502419-6502634(-)$1	1	102	105	8.9999
...	chr19:1408710-1408940(+)$1	1	37	40	8.9999
.))	chr1:26227292-26227510(-)$1	1	107	110	8.9999
...	chr3:100452045-100452300(+)$1	1	5	8	8.9999
(((	chrX:13346900-13347156(+)$1	1	34	37	8.9999
(((	chr4:83765399-83765633(-)$1	1	25	28	8.9999
(.(	chr4:71847766-71848030(+)$1	1	19	22	8.9999
.((	chr3:148772652-148772928(-)$1	1	61	64	8.9999
)..	chr22:20069111-20069358(+)$1	1	72	75	8.9999
((.	chr3:187462933-187463173(-)$1	1	0	3	8.9999
)).	chr1:160190066-160190327(-)$1	1	54	57	8.9999
)..	chr3:141622386-141622659(+)$1	1	85	88	8.9999
...	chr15:60639514-60639792(-)$1	1	5	8	8.9999
...	chr21:15857710-15857955(-)$1	1	9	12	8.9999
(((	chr19:47731627-47731908(-)$1	1	16	19	8.9999
(((	chr7:2163057-2163322(-)$1	1	12	15	8.9999
((.	chr10:72435032-72435290(+)$1	1	7	10	8.9999
(..	chr9:80944762-80945028(+)$1	1	161	164	8.9999
).)	chr16:18802930-18803160(-)$1	1	159	162	8.9999
..(	chr17:79845633-79845845(-)$1	1	68	71	8.9999
((.	chr12:133209114-133209330(-)$1	1	40	43	8.9999
...	chr10:70931630-70931896(+)$1	1	18	21	8.9999
(((	chr12:69042152-69042396(+)$1	1	43	46	8.9999
(((	chr6:57034417-57034660(+)$1	1	119	122	8.9999
((.	chr5:175621238-175621530(-)$1	1	0	3	8.9999
(((	chr1:113643031-113643310(+)$1	1	26	29	8.9999

#PSSM
G : 0.84	g : 0.15	
C : 0.84	c : 0.15	
U : 0.84	u : 0.15	

#score	818.9999999999999
#seq	91
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_UTR_m1_run2.nuc.txt

#NT
UCU	chr1:47124264-47124510(-)$1	246	55	58	9.0000
UCU	chr19:55773708-55773977(-)$1	269	14	17	9.0000
UCU	chr11:75111703-75111906(+)$1	203	50	53	9.0000
UCU	chr15:69698750-69698998(+)$1	248	3	6	9.0000
UCU	chr1:118069905-118070146(+)$1	241	117	120	9.0000
UCU	chr9:140446425-140446714(+)$1	289	10	13	9.0000
UCU	chr22:38864098-38864346(+)$1	248	34	37	9.0000
UCU	chr1:38464955-38465202(-)$1	247	3	6	9.0000
UCU	chr17:7127538-7127784(+)$1	246	83	86	9.0000
ucu	chr2:99216169-99216428(-)$1	259	39	42	9.0000
UCU	chr8:48874574-48874819(+)$1	245	45	48	9.0000
ucu	chrX:30885210-30885436(-)$1	226	47	50	9.0000
UCU	chr13:100215258-100215540(+)$1	282	49	52	9.0000
UCU	chr1:28176880-28177142(+)$1	262	180	183	9.0000
UCU	chr1:233807393-233807600(+)$1	207	14	17	9.0000
UCU	chr17:79525012-79525262(-)$1	250	74	77	9.0000
ucu	chrX:62567561-62567772(-)$1	211	26	29	9.0000
UCU	chr9:19378803-19379010(-)$1	207	0	3	9.0000
UCU	chr4:84406127-84406345(-)$1	218	64	67	9.0000
UCU	chr17:4880247-4880504(-)$1	257	10	13	9.0000
UCU	chr2:207024460-207024682(+)$1	222	124	127	9.0000
UCU	chr9:95032104-95032318(-)$1	214	12	15	9.0000
UCU	chr11:75111730-75111939(+)$1	209	23	26	9.0000
UCU	chr5:64018211-64018431(-)$1	220	2	5	9.0000
UCu	chr6:33377416-33377725(+)$1	309	64	67	9.0000
UCU	chr1:110134878-110135128(+)$1	250	39	42	9.0000
UCU	chr6:32942411-32942625(+)$1	214	64	67	9.0000
UCU	chrX:154467271-154467511(+)$1	240	44	47	9.0000
UCU	chr19:41119452-41119735(+)$1	283	123	126	9.0000
UCU	chr11:618790-619008(-)$1	218	91	94	9.0000
UCU	chr9:95032065-95032304(-)$1	239	26	29	9.0000
UCU	chr4:122744697-122744924(-)$1	227	48	51	9.0000
UCU	chr9:130551935-130552163(+)$1	228	10	13	9.0000
UCU	chr4:152024028-152024246(+)$1	218	47	50	9.0000
UCU	chr6:4116015-4116258(-)$1	243	125	128	9.0000
UCU	chr12:56705012-56705257(-)$1	245	54	57	9.0000
UCU	chr13:28009666-28009905(+)$1	239	36	39	9.0000
UCU	chr17:79524988-79525212(-)$1	224	24	27	9.0000
UCU	chr4:84393290-84393535(-)$1	245	104	107	9.0000
UCU	chr1:53704023-53704272(-)$1	249	116	119	9.0000
UCU	chr11:75111739-75111951(+)$1	212	14	17	9.0000
UCU	chr9:19378796-19379003(-)$1	207	79	82	9.0000
UCU	chr1:38471025-38471283(-)$1	258	2	5	9.0000
UCU	chr9:19378741-19378949(-)$1	208	25	28	9.0000
UCU	chr8:48874560-48874774(+)$1	214	59	62	9.0000
UCU	chr3:127872417-127872700(+)$1	283	82	85	9.0000
UCU	chr11:86048369-86048676(+)$1	307	43	46	9.0000
ucu	chr22:22221752-22221964(-)$1	212	31	34	9.0000
UCU	chr9:19378766-19378983(-)$1	217	59	62	9.0000
UCU	chr4:84406090-84406327(-)$1	237	46	49	9.0000
UCU	chr1:233807400-233807654(+)$1	254	7	10	9.0000
UCU	chr15:28508036-28508317(-)$1	281	13	16	9.0000
UCU	chr9:19378710-19378941(-)$1	231	17	20	9.0000
UCU	chr5:64018231-64018453(-)$1	222	24	27	9.0000
UCU	chr2:97260523-97260802(-)$1	279	64	67	9.0000
UCU	chr7:5270938-5271220(+)$1	282	6	9	9.0000
UCU	chr6:32942372-32942577(+)$1	205	103	106	9.0000
UCU	chr9:19378749-19378959(-)$1	210	35	38	9.0000
UCU	chr9:139760553-139760830(-)$1	277	69	72	9.0000
UCU	chr22:19711290-19711563(+)$1	273	17	20	9.0000
UCU	chr6:32942405-32942611(+)$1	206	70	73	9.0000
UCU	chr4:152024072-152024284(+)$1	212	3	6	9.0000
ucu	chrX:62567519-62567761(-)$1	242	15	18	9.0000
uCU	chr11:77780878-77781164(-)$1	286	57	60	9.0000
UCU	chr1:118069877-118070105(+)$1	228	145	148	9.0000
UCU	chr11:72414349-72414560(-)$1	211	141	144	9.0000
UCU	chr1:27272637-27272957(+)$1	320	58	61	9.0000
UCU	chr17:8172764-8173017(+)$1	253	0	3	9.0000
UCU	chr6:4115939-4116194(-)$1	255	61	64	9.0000
UCU	chr16:70514518-70514724(-)$1	206	1	4	9.0000
UCU	chr16:70514461-70514718(-)$1	257	8	11	9.0000
UCU	chr17:43185552-43185799(+)$1	247	64	67	9.0000
UCU	chr6:32942369-32942572(+)$1	203	106	109	9.0000
UCU	chr19:47724375-47724622(-)$1	247	110	113	9.0000
UCU	chr13:100215249-100215458(+)$1	209	58	61	9.0000
UCU	chr9:130551963-130552204(+)$1	241	51	54	9.0000
UCU	chr5:64018253-64018463(-)$1	210	34	37	9.0000
UCU	chr6:4115994-4116215(-)$1	221	82	85	9.0000
ucu	chr22:22221713-22221952(-)$1	239	19	22	9.0000
UCU	chr4:144106164-144106394(+)$1	230	6	9	9.0000
UCU	chr11:618786-618990(-)$1	204	73	76	9.0000
UCU	chr9:19378783-19378993(-)$1	210	69	72	9.0000
UCU	chr19:10225611-10225851(-)$1	240	16	19	9.0000
UCU	chr12:25260648-25260895(+)$1	247	52	55	9.0000
UCU	chr2:130940170-130940445(+)$1	275	15	18	9.0000
UCU	chr9:19378759-19378966(-)$1	207	42	45	9.0000
UCU	chrX:153662613-153662886(+)$1	273	61	64	9.0000
UCU	chr18:55268734-55268982(-)$1	248	19	22	9.0000
UCU	chr9:19378810-19379016(-)$1	206	6	9	9.0000
UCU	chr4:152024046-152024272(+)$1	226	29	32	9.0000
UCU	chr11:75111706-75111930(+)$1	224	47	50	9.0000

#otherMatches

#Struct PSSM
333	chr9:19378793-19378996(-)$1	203	72	75	9.0000
PFF	chr1:47124264-47124510(-)$1	246	55	58	9.0000
nnn	chr19:55773708-55773977(-)$1	269	14	17	9.0000
::d	chr11:75111703-75111906(+)$1	203	50	53	9.0000
DAH	chr15:69698750-69698998(+)$1	248	3	6	9.0000
DDD	chr1:118069905-118070146(+)$1	241	117	120	9.0000
DDD	chr9:140446425-140446714(+)$1	289	10	13	9.0000
ggg	chr22:38864098-38864346(+)$1	248	34	37	9.0000
ee[	chr1:38464955-38465202(-)$1	247	3	6	9.0000
d22	chr17:7127538-7127784(+)$1	246	83	86	9.0000
ppp	chr2:99216169-99216428(-)$1	259	39	42	9.0000
GGG	chr8:48874574-48874819(+)$1	245	45	48	9.0000
ggg	chrX:30885210-30885436(-)$1	226	47	50	9.0000
KGG	chr13:100215258-100215540(+)$1	282	49	52	9.0000
c::	chr1:28176880-28177142(+)$1	262	180	183	9.0000
fff	chr1:233807393-233807600(+)$1	207	14	17	9.0000
bb:	chr17:79525012-79525262(-)$1	250	74	77	9.0000
ccm	chrX:62567561-62567772(-)$1	211	26	29	9.0000
:::	chr9:19378803-19379010(-)$1	207	0	3	9.0000
e""	chr4:84406127-84406345(-)$1	218	64	67	9.0000
:::	chr17:4880247-4880504(-)$1	257	10	13	9.0000
hh:	chr2:207024460-207024682(+)$1	222	124	127	9.0000
HH:	chr9:95032104-95032318(-)$1	214	12	15	9.0000
::d	chr11:75111730-75111939(+)$1	209	23	26	9.0000
:::	chr5:64018211-64018431(-)$1	220	2	5	9.0000
fff	chr6:33377416-33377725(+)$1	309	64	67	9.0000
EEE	chr1:110134878-110135128(+)$1	250	39	42	9.0000
d33	chr6:32942411-32942625(+)$1	214	64	67	9.0000
ddd	chrX:154467271-154467511(+)$1	240	44	47	9.0000
2cc	chr19:41119452-41119735(+)$1	283	123	126	9.0000
ccc	chr11:618790-619008(-)$1	218	91	94	9.0000
ddd	chr9:95032065-95032304(-)$1	239	26	29	9.0000
bb2	chr4:122744697-122744924(-)$1	227	48	51	9.0000
JJJ	chr9:130551935-130552163(+)$1	228	10	13	9.0000
eee	chr4:152024028-152024246(+)$1	218	47	50	9.0000
%%e	chr6:4116015-4116258(-)$1	243	125	128	9.0000
mmm	chr12:56705012-56705257(-)$1	245	54	57	9.0000
G::	chr13:28009666-28009905(+)$1	239	36	39	9.0000
:::	chr17:79524988-79525212(-)$1	224	24	27	9.0000
ggg	chr4:84393290-84393535(-)$1	245	104	107	9.0000
eee	chr1:53704023-53704272(-)$1	249	116	119	9.0000
::d	chr11:75111739-75111951(+)$1	212	14	17	9.0000
333	chr9:19378796-19379003(-)$1	207	79	82	9.0000
cll	chr1:38471025-38471283(-)$1	258	2	5	9.0000
:::	chr9:19378741-19378949(-)$1	208	25	28	9.0000
FFF	chr8:48874560-48874774(+)$1	214	59	62	9.0000
sss	chr3:127872417-127872700(+)$1	283	82	85	9.0000
:JJ	chr11:86048369-86048676(+)$1	307	43	46	9.0000
lld	chr22:22221752-22221964(-)$1	212	31	34	9.0000
333	chr9:19378766-19378983(-)$1	217	59	62	9.0000
JJJ	chr4:84406090-84406327(-)$1	237	46	49	9.0000
fff	chr1:233807400-233807654(+)$1	254	7	10	9.0000
ffv	chr15:28508036-28508317(-)$1	281	13	16	9.0000
:::	chr9:19378710-19378941(-)$1	231	17	20	9.0000
ddd	chr5:64018231-64018453(-)$1	222	24	27	9.0000
!cc	chr2:97260523-97260802(-)$1	279	64	67	9.0000
FFF	chr7:5270938-5271220(+)$1	282	6	9	9.0000
d[f	chr6:32942372-32942577(+)$1	205	103	106	9.0000
:::	chr9:19378749-19378959(-)$1	210	35	38	9.0000
EEE	chr9:139760553-139760830(-)$1	277	69	72	9.0000
ggg	chr22:19711290-19711563(+)$1	273	17	20	9.0000
d33	chr6:32942405-32942611(+)$1	206	70	73	9.0000
eee	chr4:152024072-152024284(+)$1	212	3	6	9.0000
FFM	chrX:62567519-62567761(-)$1	242	15	18	9.0000
:::	chr11:77780878-77781164(-)$1	286	57	60	9.0000
DDD	chr1:118069877-118070105(+)$1	228	145	148	9.0000
FFF	chr11:72414349-72414560(-)$1	211	141	144	9.0000
555	chr1:27272637-27272957(+)$1	320	58	61	9.0000
:::	chr17:8172764-8173017(+)$1	253	0	3	9.0000
%%e	chr6:4115939-4116194(-)$1	255	61	64	9.0000
ccg	chr16:70514518-70514724(-)$1	206	1	4	9.0000
GGG	chr16:70514461-70514718(-)$1	257	8	11	9.0000
:::	chr17:43185552-43185799(+)$1	247	64	67	9.0000
d[f	chr6:32942369-32942572(+)$1	203	106	109	9.0000
777	chr19:47724375-47724622(-)$1	247	110	113	9.0000
DD:	chr13:100215249-100215458(+)$1	209	58	61	9.0000
ccc	chr9:130551963-130552204(+)$1	241	51	54	9.0000
ddd	chr5:64018253-64018463(-)$1	210	34	37	9.0000
%%e	chr6:4115994-4116215(-)$1	221	82	85	9.0000
eee	chr22:22221713-22221952(-)$1	239	19	22	9.0000
###	chr4:144106164-144106394(+)$1	230	6	9	9.0000
ccc	chr11:618786-618990(-)$1	204	73	76	9.0000
333	chr9:19378783-19378993(-)$1	210	69	72	9.0000
:::	chr19:10225611-10225851(-)$1	240	16	19	9.0000
$$d	chr12:25260648-25260895(+)$1	247	52	55	9.0000
{EE	chr2:130940170-130940445(+)$1	275	15	18	9.0000
###	chr9:19378759-19378966(-)$1	207	42	45	9.0000
fff	chrX:153662613-153662886(+)$1	273	61	64	9.0000
ddd	chr18:55268734-55268982(-)$1	248	19	22	9.0000
DDD	chr9:19378810-19379016(-)$1	206	6	9	9.0000
eee	chr4:152024046-152024272(+)$1	226	29	32	9.0000
::d	chr11:75111706-75111930(+)$1	224	47	50	9.0000

#DB
...	chr9:19378793-19378996(-)$1	1	72	75	9.0000
.((	chr1:47124264-47124510(-)$1	1	55	58	9.0000
...	chr19:55773708-55773977(-)$1	1	14	17	9.0000
..(	chr11:75111703-75111906(+)$1	1	50	53	9.0000
(((	chr15:69698750-69698998(+)$1	1	3	6	9.0000
)))	chr1:118069905-118070146(+)$1	1	117	120	9.0000
(((	chr9:140446425-140446714(+)$1	1	10	13	9.0000
(((	chr22:38864098-38864346(+)$1	1	34	37	9.0000
((.	chr1:38464955-38465202(-)$1	1	3	6	9.0000
)..	chr17:7127538-7127784(+)$1	1	83	86	9.0000
...	chr2:99216169-99216428(-)$1	1	39	42	9.0000
(((	chr8:48874574-48874819(+)$1	1	45	48	9.0000
(((	chrX:30885210-30885436(-)$1	1	47	50	9.0000
.((	chr13:100215258-100215540(+)$1	1	49	52	9.0000
)..	chr1:28176880-28177142(+)$1	1	180	183	9.0000
(((	chr1:233807393-233807600(+)$1	1	14	17	9.0000
)).	chr17:79525012-79525262(-)$1	1	74	77	9.0000
((.	chrX:62567561-62567772(-)$1	1	26	29	9.0000
...	chr9:19378803-19379010(-)$1	1	0	3	9.0000
(..	chr4:84406127-84406345(-)$1	1	64	67	9.0000
...	chr17:4880247-4880504(-)$1	1	10	13	9.0000
)).	chr2:207024460-207024682(+)$1	1	124	127	9.0000
((.	chr9:95032104-95032318(-)$1	1	12	15	9.0000
..(	chr11:75111730-75111939(+)$1	1	23	26	9.0000
...	chr5:64018211-64018431(-)$1	1	2	5	9.0000
)))	chr6:33377416-33377725(+)$1	1	64	67	9.0000
(((	chr1:110134878-110135128(+)$1	1	39	42	9.0000
)..	chr6:32942411-32942625(+)$1	1	64	67	9.0000
(((	chrX:154467271-154467511(+)$1	1	44	47	9.0000
.))	chr19:41119452-41119735(+)$1	1	123	126	9.0000
)))	chr11:618790-619008(-)$1	1	91	94	9.0000
(((	chr9:95032065-95032304(-)$1	1	26	29	9.0000
)).	chr4:122744697-122744924(-)$1	1	48	51	9.0000
(((	chr9:130551935-130552163(+)$1	1	10	13	9.0000
(((	chr4:152024028-152024246(+)$1	1	47	50	9.0000
..(	chr6:4116015-4116258(-)$1	1	125	128	9.0000
...	chr12:56705012-56705257(-)$1	1	54	57	9.0000
(..	chr13:28009666-28009905(+)$1	1	36	39	9.0000
...	chr17:79524988-79525212(-)$1	1	24	27	9.0000
(((	chr4:84393290-84393535(-)$1	1	104	107	9.0000
(((	chr1:53704023-53704272(-)$1	1	116	119	9.0000
..(	chr11:75111739-75111951(+)$1	1	14	17	9.0000
...	chr9:19378796-19379003(-)$1	1	79	82	9.0000
(..	chr1:38471025-38471283(-)$1	1	2	5	9.0000
...	chr9:19378741-19378949(-)$1	1	25	28	9.0000
(((	chr8:48874560-48874774(+)$1	1	59	62	9.0000
...	chr3:127872417-127872700(+)$1	1	82	85	9.0000
.((	chr11:86048369-86048676(+)$1	1	43	46	9.0000
..)	chr22:22221752-22221964(-)$1	1	31	34	9.0000
...	chr9:19378766-19378983(-)$1	1	59	62	9.0000
(((	chr4:84406090-84406327(-)$1	1	46	49	9.0000
(((	chr1:233807400-233807654(+)$1	1	7	10	9.0000
((.	chr15:28508036-28508317(-)$1	1	13	16	9.0000
...	chr9:19378710-19378941(-)$1	1	17	20	9.0000
(((	chr5:64018231-64018453(-)$1	1	24	27	9.0000
.((	chr2:97260523-97260802(-)$1	1	64	67	9.0000
(((	chr7:5270938-5271220(+)$1	1	6	9	9.0000
(.(	chr6:32942372-32942577(+)$1	1	103	106	9.0000
...	chr9:19378749-19378959(-)$1	1	35	38	9.0000
)))	chr9:139760553-139760830(-)$1	1	69	72	9.0000
(((	chr22:19711290-19711563(+)$1	1	17	20	9.0000
)..	chr6:32942405-32942611(+)$1	1	70	73	9.0000
(((	chr4:152024072-152024284(+)$1	1	3	6	9.0000
((.	chrX:62567519-62567761(-)$1	1	15	18	9.0000
...	chr11:77780878-77781164(-)$1	1	57	60	9.0000
)))	chr1:118069877-118070105(+)$1	1	145	148	9.0000
)))	chr11:72414349-72414560(-)$1	1	141	144	9.0000
...	chr1:27272637-27272957(+)$1	1	58	61	9.0000
...	chr17:8172764-8173017(+)$1	1	0	3	9.0000
..(	chr6:4115939-4116194(-)$1	1	61	64	9.0000
(((	chr16:70514518-70514724(-)$1	1	1	4	9.0000
(((	chr16:70514461-70514718(-)$1	1	8	11	9.0000
...	chr17:43185552-43185799(+)$1	1	64	67	9.0000
(.(	chr6:32942369-32942572(+)$1	1	106	109	9.0000
...	chr19:47724375-47724622(-)$1	1	110	113	9.0000
((.	chr13:100215249-100215458(+)$1	1	58	61	9.0000
)))	chr9:130551963-130552204(+)$1	1	51	54	9.0000
(((	chr5:64018253-64018463(-)$1	1	34	37	9.0000
..(	chr6:4115994-4116215(-)$1	1	82	85	9.0000
(((	chr22:22221713-22221952(-)$1	1	19	22	9.0000
...	chr4:144106164-144106394(+)$1	1	6	9	9.0000
)))	chr11:618786-618990(-)$1	1	73	76	9.0000
...	chr9:19378783-19378993(-)$1	1	69	72	9.0000
...	chr19:10225611-10225851(-)$1	1	16	19	9.0000
..(	chr12:25260648-25260895(+)$1	1	52	55	9.0000
.((	chr2:130940170-130940445(+)$1	1	15	18	9.0000
...	chr9:19378759-19378966(-)$1	1	42	45	9.0000
)))	chrX:153662613-153662886(+)$1	1	61	64	9.0000
)))	chr18:55268734-55268982(-)$1	1	19	22	9.0000
(((	chr9:19378810-19379016(-)$1	1	6	9	9.0000
(((	chr4:152024046-152024272(+)$1	1	29	32	9.0000
..(	chr11:75111706-75111930(+)$1	1	47	50	9.0000

#PSSM
U : 0.92	u : 0.07	
C : 0.93	c : 0.06	
U : 0.92	u : 0.07	

#score	828.0000000000002
#seq	92
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_UTR_m3_run1.nuc.txt

#NT
GUCCUGG	chr6:44215502-44215742(+)$1	240	154	161	16.5645
GUGCUGG	chr11:64846254-64846505(-)$1	251	38	45	12.8548
GUCCCGG	chr22:39131534-39131786(-)$1	252	104	111	12.4516
GUCCUGC	chr1:225615087-225615335(-)$1	248	30	37	12.5322
GACCUGG	chr17:7476417-7476723(+)$1	306	59	66	13.0967
GUCCUGC	chr1:6259455-6259712(-)$1	257	191	198	12.5322
GUGCUGG	chr16:2301257-2301524(-)$1	267	180	187	12.8548
GUCCGGG	chr16:12008919-12009199(-)$1	280	39	46	12.1290
GGCCUGG	chr19:8550805-8551049(+)$1	244	124	131	13.7419
GUCCUGG	chr9:137024366-137024629(+)$1	263	101	108	16.5645
GUcccgg	chr2:10443018-10443272(+)$1	254	194	201	12.4516
GUCCCGG	chr11:10829730-10829957(-)$1	227	105	112	12.4516
UUCCUGG	chr1:90308449-90308739(+)$1	290	117	124	12.2903
GUCCCGG	chr8:145149889-145150126(+)$1	237	210	217	12.4516
GUCCUGG	chr9:137024749-137025031(+)$1	282	159	166	16.5645
GUCUUGG	chr20:1165187-1165512(-)$1	325	170	177	12.2903
GUGCUGG	chr2:131806979-131807237(-)$1	258	105	112	12.8548
GUCCUGU	chr17:80678661-80678985(+)$1	324	214	221	12.2096
GACCUGG	chr16:2059503-2059750(-)$1	247	105	112	13.0967
GUCAUGG	chr19:54970464-54970709(+)$1	245	140	147	12.2903
GGCCUGG	chr19:8551017-8551241(+)$1	224	32	39	13.7419
GUCCCGG	chr2:11484151-11484474(-)$1	323	116	123	12.4516
GUCCUCG	chr1:245025909-245026178(-)$1	269	24	31	12.0483
GGCCUGG	chr9:140512683-140513121(-)$1	438	80	87	13.7419
CUCCUGG	chr12:50898702-50898996(+)$1	294	33	40	12.7741
GUGCUGG	chr15:64793542-64793800(+)$1	258	206	213	12.8548
GGCCUGG	chr22:20105234-20105528(+)$1	294	165	172	13.7419
GGCCUGG	chr5:86564044-86564350(+)$1	306	162	169	13.7419
GGCCUGG	chr19:8550849-8551139(+)$1	290	80	87	13.7419
CUCCUGG	chr7:129710288-129710649(+)$1	361	100	107	12.7741
GUGCUGG	chr16:2301213-2301457(-)$1	244	113	120	12.8548
GUCCUGG	chr19:8550423-8550681(+)$1	258	102	109	16.5645
GUCCUUG	chr17:75177040-75177365(+)$1	325	47	54	11.9677
CUCCUGG	chr20:62563402-62563669(+)$1	267	63	70	12.7741
GGCCUGG	chr1:20234886-20235135(+)$1	249	50	57	13.7419
CUCCUGG	chr10:129924316-129924597(-)$1	281	252	259	12.7741
CUCCUGG	chr19:54710502-54710751(+)$1	249	162	169	12.7741
GUCUUGG	chr1:20236004-20236247(+)$1	243	28	35	12.2903
GUGCUGG	chr19:574994-575327(+)$1	333	158	165	12.8548
GUGCUGG	chr1:47697145-47697437(-)$1	292	185	192	12.8548
GUCCUAG	chr7:99070412-99070736(+)$1	324	46	53	11.9677
GUCCUCG	chr3:33481508-33481782(-)$1	274	58	65	12.0483
GGCCUGG	chr19:19569288-19569580(+)$1	292	144	151	13.7419
GUCCUGG	chr1:182360137-182360402(-)$1	265	45	52	16.5645
GUCCUGC	chrX:77361945-77362174(+)$1	229	142	149	12.5322
GUCAUGG	chr1:22108363-22108618(-)$1	255	135	142	12.2903
GGCCUGG	chr17:80816335-80816607(+)$1	272	139	146	13.7419
CUCCUGG	chr1:78224879-78225172(-)$1	293	240	247	12.7741
GUCCUGC	chr1:6259307-6259556(-)$1	249	35	42	12.5322
GUCCUGG	chr19:8550507-8550791(+)$1	284	18	25	16.5645
GGCCUGG	chr12:77158274-77158551(+)$1	277	135	142	13.7419
GCCCUGG	chr11:10829272-10829524(-)$1	252	75	82	13.0161
GUCCUGG	chr6:44215564-44215824(+)$1	260	92	99	16.5645
GACCUGG	chr19:54971363-54971594(+)$1	231	62	69	13.0967
guccuga	chr20:42295702-42296047(+)$1	345	145	152	12.2096
GCCCUGG	chr2:242212399-242212676(-)$1	277	0	7	13.0161
GUCCUGC	chrX:153627079-153627340(+)$1	261	34	41	12.5322
GUCAUGG	chr4:1950096-1950346(+)$1	250	222	229	12.2903
GUCUUGG	chr2:160569009-160569300(+)$1	291	192	199	12.2903
GGCCUGG	chr2:131808257-131808521(-)$1	264	37	44	13.7419
GUGCUGG	chr17:74261444-74261704(+)$1	260	193	200	12.8548

#otherMatches

#Struct PSSM
JJJJ:::	chr19:8551139-8551370(+)$1	231	106	113	12.7741
:::::ii	chr6:44215502-44215742(+)$1	240	154	161	16.5645
b[cccff	chr11:64846254-64846505(-)$1	251	38	45	12.8548
fffbb!!	chr22:39131534-39131786(-)$1	252	104	111	12.4516
22fffff	chr1:225615087-225615335(-)$1	248	30	37	12.5322
d]a]fff	chr17:7476417-7476723(+)$1	306	59	66	13.0967
eee:iii	chr1:6259455-6259712(-)$1	257	191	198	12.5322
ddccc]a	chr16:2301257-2301524(-)$1	267	180	187	12.8548
JLLLBB{	chr16:12008919-12009199(-)$1	280	39	46	12.1290
:bbbb[c	chr19:8550805-8551049(+)$1	244	124	131	13.7419
gggggss	chr9:137024366-137024629(+)$1	263	101	108	16.5645
ccclllc	chr2:10443018-10443272(+)$1	254	194	201	12.4516
ffffff2	chr11:10829730-10829957(-)$1	227	105	112	12.4516
e22a:ff	chr1:90308449-90308739(+)$1	290	117	124	12.2903
f]fffff	chr8:145149889-145150126(+)$1	237	210	217	12.4516
EEEEEff	chr9:137024749-137025031(+)$1	282	159	166	16.5645
ffffmmm	chr20:1165187-1165512(-)$1	325	170	177	12.2903
]a:::JJ	chr2:131806979-131807237(-)$1	258	105	112	12.8548
=::IIII	chr17:80678661-80678985(+)$1	324	214	221	12.2096
::eeeee	chr16:2059503-2059750(-)$1	247	105	112	13.0967
qqqqqqq	chr19:54970464-54970709(+)$1	245	140	147	12.2903
gggggg!	chr19:8551017-8551241(+)$1	224	32	39	13.7419
2dddd]c	chr2:11484151-11484474(-)$1	323	116	123	12.4516
HHHHH:c	chr1:245025909-245026178(-)$1	269	24	31	12.0483
fffff22	chr9:140512683-140513121(-)$1	438	80	87	13.7419
G:ccc[c	chr12:50898702-50898996(+)$1	294	33	40	12.7741
c333ccc	chr15:64793542-64793800(+)$1	258	206	213	12.8548
fffff]c	chr22:20105234-20105528(+)$1	294	165	172	13.7419
eeeemmm	chr5:86564044-86564350(+)$1	306	162	169	13.7419
2eeeeea	chr19:8550849-8551139(+)$1	290	80	87	13.7419
[gggggg	chr7:129710288-129710649(+)$1	361	100	107	12.7741
ccceeee	chr16:2301213-2301457(-)$1	244	113	120	12.8548
eeee:cc	chr19:8550423-8550681(+)$1	258	102	109	16.5645
edddd::	chr17:75177040-75177365(+)$1	325	47	54	11.9677
eeee[cc	chr20:62563402-62563669(+)$1	267	63	70	12.7741
""fffff	chr1:20234886-20235135(+)$1	249	50	57	13.7419
lleeeee	chr10:129924316-129924597(-)$1	281	252	259	12.7741
JJFFFFF	chr19:54710502-54710751(+)$1	249	162	169	12.7741
essssss	chr1:20236004-20236247(+)$1	243	28	35	12.2903
ee]eeee	chr19:574994-575327(+)$1	333	158	165	12.8548
JJJJeee	chr1:47697145-47697437(-)$1	292	185	192	12.8548
hhhhhll	chr7:99070412-99070736(+)$1	324	46	53	11.9677
c[fffff	chr3:33481508-33481782(-)$1	274	58	65	12.0483
a]hhhhh	chr19:19569288-19569580(+)$1	292	144	151	13.7419
!bbccc"	chr1:182360137-182360402(-)$1	265	45	52	16.5645
ccc!!ee	chrX:77361945-77362174(+)$1	229	142	149	12.5322
:::::a[	chr1:22108363-22108618(-)$1	255	135	142	12.2903
}HHHHHH	chr17:80816335-80816607(+)$1	272	139	146	13.7419
YCCC}CC	chr1:78224879-78225172(-)$1	293	240	247	12.7741
ii"""hh	chr1:6259307-6259556(-)$1	249	35	42	12.5322
fffffff	chr19:8550507-8550791(+)$1	284	18	25	16.5645
d####a[	chr12:77158274-77158551(+)$1	277	135	142	13.7419
DDDKKEE	chr11:10829272-10829524(-)$1	252	75	82	13.0161
LDDDDii	chr6:44215564-44215824(+)$1	260	92	99	16.5645
[a[eeee	chr19:54971363-54971594(+)$1	231	62	69	13.0967
ddmmmmd	chr20:42295702-42296047(+)$1	345	145	152	12.2096
:::::ff	chr2:242212399-242212676(-)$1	277	0	7	13.0161
$$$$ccc	chrX:153627079-153627340(+)$1	261	34	41	12.5322
::::fff	chr4:1950096-1950346(+)$1	250	222	229	12.2903
h[ddddc	chr2:160569009-160569300(+)$1	291	192	199	12.2903
nnnnbb]	chr2:131808257-131808521(-)$1	264	37	44	13.7419
eeedddd	chr17:74261444-74261704(+)$1	260	193	200	12.8548

#DB
))))...	chr19:8551139-8551370(+)$1	1	106	113	12.7741
.....((	chr6:44215502-44215742(+)$1	1	154	161	16.5645
(.(((((	chr11:64846254-64846505(-)$1	1	38	45	12.8548
)))((..	chr22:39131534-39131786(-)$1	1	104	111	12.4516
..)))))	chr1:225615087-225615335(-)$1	1	30	37	12.5322
).).)))	chr17:7476417-7476723(+)$1	1	59	66	13.0967
))).(((	chr1:6259455-6259712(-)$1	1	191	198	12.5322
))))).)	chr16:2301257-2301524(-)$1	1	180	187	12.8548
(...((.	chr16:12008919-12009199(-)$1	1	39	46	12.1290
.((((.(	chr19:8550805-8551049(+)$1	1	124	131	13.7419
(((((..	chr9:137024366-137024629(+)$1	1	101	108	16.5645
(((...)	chr2:10443018-10443272(+)$1	1	194	201	12.4516
)))))).	chr11:10829730-10829957(-)$1	1	105	112	12.4516
)..).((	chr1:90308449-90308739(+)$1	1	117	124	12.2903
).)))))	chr8:145149889-145150126(+)$1	1	210	217	12.4516
(((((((	chr9:137024749-137025031(+)$1	1	159	166	16.5645
((((...	chr20:1165187-1165512(-)$1	1	170	177	12.2903
.)...))	chr2:131806979-131807237(-)$1	1	105	112	12.8548
)..))))	chr17:80678661-80678985(+)$1	1	214	221	12.2096
..(((((	chr16:2059503-2059750(-)$1	1	105	112	13.0967
.......	chr19:54970464-54970709(+)$1	1	140	147	12.2903
((((((.	chr19:8551017-8551241(+)$1	1	32	39	13.7419
.)))).)	chr2:11484151-11484474(-)$1	1	116	123	12.4516
(((((.(	chr1:245025909-245026178(-)$1	1	24	31	12.0483
)))))..	chr9:140512683-140513121(-)$1	1	80	87	13.7419
(.(((.(	chr12:50898702-50898996(+)$1	1	33	40	12.7741
)...)))	chr15:64793542-64793800(+)$1	1	206	213	12.8548
))))).)	chr22:20105234-20105528(+)$1	1	165	172	13.7419
((((...	chr5:86564044-86564350(+)$1	1	162	169	13.7419
.))))))	chr19:8550849-8551139(+)$1	1	80	87	13.7419
.((((((	chr7:129710288-129710649(+)$1	1	100	107	12.7741
(((((((	chr16:2301213-2301457(-)$1	1	113	120	12.8548
)))).((	chr19:8550423-8550681(+)$1	1	102	109	16.5645
)))))..	chr17:75177040-75177365(+)$1	1	47	54	11.9677
((((.((	chr20:62563402-62563669(+)$1	1	63	70	12.7741
..(((((	chr1:20234886-20235135(+)$1	1	50	57	13.7419
..)))))	chr10:129924316-129924597(-)$1	1	252	259	12.7741
)))))))	chr19:54710502-54710751(+)$1	1	162	169	12.7741
(......	chr1:20236004-20236247(+)$1	1	28	35	12.2903
)).))))	chr19:574994-575327(+)$1	1	158	165	12.8548
))))(((	chr1:47697145-47697437(-)$1	1	185	192	12.8548
(((((..	chr7:99070412-99070736(+)$1	1	46	53	11.9677
(.(((((	chr3:33481508-33481782(-)$1	1	58	65	12.0483
).)))))	chr19:19569288-19569580(+)$1	1	144	151	13.7419
.(((((.	chr1:182360137-182360402(-)$1	1	45	52	16.5645
(((..((	chrX:77361945-77362174(+)$1	1	142	149	12.5322
.....(.	chr1:22108363-22108618(-)$1	1	135	142	12.2903
.))))))	chr17:80816335-80816607(+)$1	1	139	146	13.7419
.))).))	chr1:78224879-78225172(-)$1	1	240	247	12.7741
((...((	chr1:6259307-6259556(-)$1	1	35	42	12.5322
)))))((	chr19:8550507-8550791(+)$1	1	18	25	16.5645
(....(.	chr12:77158274-77158551(+)$1	1	135	142	13.7419
(((..((	chr11:10829272-10829524(-)$1	1	75	82	13.0161
.((((((	chr6:44215564-44215824(+)$1	1	92	99	16.5645
.(.((((	chr19:54971363-54971594(+)$1	1	62	69	13.0967
((....)	chr20:42295702-42296047(+)$1	1	145	152	12.2096
.....((	chr2:242212399-242212676(-)$1	1	0	7	13.0161
....(((	chrX:153627079-153627340(+)$1	1	34	41	12.5322
....(((	chr4:1950096-1950346(+)$1	1	222	229	12.2903
(.(((((	chr2:160569009-160569300(+)$1	1	192	199	12.2903
....)).	chr2:131808257-131808521(-)$1	1	37	44	13.7419
)))))))	chr17:74261444-74261704(+)$1	1	193	200	12.8548

#PSSM
G : 0.85	C : 0.11	U : 0.01	g : 0.01	
U : 0.72	G : 0.17	A : 0.04	C : 0.03	u : 0.01	
C : 0.83	G : 0.12	c : 0.03	
C : 0.87	U : 0.04	A : 0.04	c : 0.03	
U : 0.88	C : 0.06	G : 0.01	c : 0.01	u : 0.01	
G : 0.90	g : 0.03	C : 0.03	U : 0.01	A : 0.01	
G : 0.87	C : 0.08	g : 0.01	U : 0.01	a : 0.01	

#score	820.2258064516121
#seq	62
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_transcript_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
:::GGGGGGGhhhhhhhhxxxxxxxxxxxxxxxhhhhhhhhDDDDEEEEEOOOOOOEEEEEccc"""ffffff(((((((((ffffffooooooffffffffffff4444ccc:::::::HHHHHHHH:eeeee[dddd"""cccooooooccc>>>>>>>>>>>>ddddeeeee::::eeeee[ccccccnnnnnccc]ccc333eeeee::::::HHHHHHHH}EEEEEEEEEE______DDDDddddmmmmdddd::::::::GGGGGGG::::	chr5:10679532-10679818(-)$1	286	6	283	831.0000

#DB
...(((((((((((((((...............))))))))(((((((((......((((((((...((((((.........((((((......))))))))))))....))).......((((((((.(((((.((((...(((......)))............)))))))))....(((((.((((((.....))).)))...)))))......)))))))).))))))))))......))))((((....))))........)))))))....	chr5:10679532-10679818(-)$1	1	6	283	831.0000

#PSSM
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	

#score	831.0
#seq	1
#width	277
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_transcript_m3_run1.nuc.txt

#NT
GUG	chr19:55899309-55899587(+)$1	278	14	17	8.9999
GUG	chr11:212511-212807(+)$1	296	19	22	8.9999
GUG	chr12:49317850-49318143(-)$1	293	65	68	8.9999
GUG	chr11:420844-421049(-)$1	205	6	9	8.9999
GUG	chr20:34302005-34302208(-)$1	203	6	9	8.9999
GUG	chr5:72189164-72189459(+)$1	295	25	28	8.9999
GUG	chr16:53503909-53504163(+)$1	254	67	70	8.9999
GUG	chr9:35689117-35689333(-)$1	216	119	122	8.9999
GUG	chr2:85769347-85769574(+)$1	227	71	74	8.9999
GUG	chr7:129330145-129330444(+)$1	299	100	103	8.9999
GUG	chr16:2279520-2279775(+)$1	255	50	53	8.9999
GUG	chr17:78854113-78854345(+)$1	232	46	49	8.9999
GUG	chrX:47085264-47085576(+)$1	312	11	14	8.9999
GUG	chr2:61188538-61188785(-)$1	247	12	15	8.9999
gug	chr4:120433945-120434217(+)$1	272	22	25	8.9999
GUG	chr14:75576420-75576683(-)$1	263	113	116	8.9999
GUG	chr6:32138103-32138362(-)$1	259	12	15	8.9999
GUG	chr17:34871607-34871829(-)$1	222	32	35	8.9999
GUG	chr7:6681393-6681656(+)$1	263	21	24	8.9999
GUG	chr16:16146481-16146718(+)$1	237	14	17	8.9999
GUG	chr21:46906693-46906928(+)$1	235	9	12	8.9999
GUG	chr2:70527870-70528126(-)$1	256	28	31	8.9999
GUG	chr1:1019540-1019814(-)$1	274	3	6	8.9999
GUG	chr4:79293847-79294076(+)$1	229	25	28	8.9999
GUG	chr5:140023109-140023362(+)$1	253	155	158	8.9999
GUG	chr17:80382233-80382465(+)$1	232	52	55	8.9999
GUG	chr19:1881133-1881365(-)$1	232	17	20	8.9999
GUG	chr12:103245363-103245569(-)$1	206	17	20	8.9999
gug	chr16:24817426-24817651(+)$1	225	8	11	8.9999
gug	chr19:17379492-17379796(+)$1	304	8	11	8.9999
GUG	chr1:19202713-19202925(-)$1	212	38	41	8.9999
GUG	chr17:73826609-73826840(-)$1	231	21	24	8.9999
GUG	chr14:23792485-23792717(+)$1	232	2	5	8.9999
gug	chr16:15761039-15761313(+)$1	274	5	8	8.9999
GUG	chr14:97010383-97010641(+)$1	258	120	123	8.9999
GUG	chr9:138393680-138393967(+)$1	287	80	83	8.9999
GUG	chr1:27741223-27741501(-)$1	278	112	115	8.9999
GUG	chr12:53852955-53853160(+)$1	205	33	36	8.9999
GUG	chr1:23782514-23782754(-)$1	240	112	115	8.9999
GUG	chr4:1801135-1801350(+)$1	215	0	3	8.9999
GUG	chr11:14539340-14539574(-)$1	234	19	22	8.9999
GUG	chr3:27453032-27453297(-)$1	265	47	50	8.9999
GUG	chr20:62373998-62374243(+)$1	245	25	28	8.9999
GUG	chr1:228593960-228594251(-)$1	291	67	70	8.9999
GUG	chr15:43022224-43022456(-)$1	232	19	22	8.9999
GUG	chr22:38028631-38028885(+)$1	254	16	19	8.9999
GUG	chr6:13584291-13584558(+)$1	267	1	4	8.9999
GUG	chr19:622719-622968(-)$1	249	27	30	8.9999
GUG	chr13:34404755-34405021(+)$1	266	109	112	8.9999
GUG	chr2:96962178-96962409(-)$1	231	9	12	8.9999
GUG	chr20:39983242-39983478(+)$1	236	1	4	8.9999
GUG	chr13:53013132-53013403(-)$1	271	47	50	8.9999
GUG	chr17:79863451-79863683(-)$1	232	10	13	8.9999
GUG	chr19:1244005-1244285(+)$1	280	42	45	8.9999
GUG	chr11:73962579-73962865(+)$1	286	1	4	8.9999
GUG	chr4:69198924-69199158(-)$1	234	10	13	8.9999
GUG	chr13:107196268-107196514(-)$1	246	236	239	8.9999
GUG	chr5:176738655-176738909(-)$1	254	17	20	8.9999
GUG	chr20:42315539-42315799(+)$1	260	32	35	8.9999
GUG	chrX:47058509-47058792(+)$1	283	0	3	8.9999
GUG	chr19:41248380-41248608(-)$1	228	10	13	8.9999
GUG	chr9:134014569-134014853(+)$1	284	149	152	8.9999
GUG	chr12:57567462-57567699(+)$1	237	83	86	8.9999
GUG	chr17:7123882-7124094(+)$1	212	58	61	8.9999
GUG	chr11:70261673-70261925(+)$1	252	76	79	8.9999
GUG	chr1:26508750-26508997(+)$1	247	143	146	8.9999
GUG	chr7:933474-933708(+)$1	234	50	53	8.9999
GUG	chr11:372025-372260(+)$1	235	70	73	8.9999
GUG	chr6:43411853-43412115(+)$1	262	150	153	8.9999
GUG	chr15:25315163-25315408(+)$1	245	3	6	8.9999
GUG	chr6:43038974-43039212(+)$1	238	105	108	8.9999
GUG	chr1:227921026-227921275(-)$1	249	26	29	8.9999
GUG	chr1:35652705-35652913(-)$1	208	17	20	8.9999
GUG	chr6:31752920-31753143(-)$1	223	11	14	8.9999
GUG	chr19:48248719-48248953(+)$1	234	24	27	8.9999
GUG	chr10:101556802-101557025(+)$1	223	31	34	8.9999
GUG	chr11:46396106-46396317(+)$1	211	24	27	8.9999
GUG	chr17:36863679-36863895(+)$1	216	39	42	8.9999
GUG	chr2:241463199-241463557(-)$1	358	2	5	8.9999
GUG	chr12:109210700-109211046(-)$1	346	31	34	8.9999
GUG	chrX:70679388-70679655(+)$1	267	17	20	8.9999
GUG	chr12:10856599-10856850(-)$1	251	63	66	8.9999
GUG	chr2:11752520-11752735(+)$1	215	14	17	8.9999
GUG	chr21:45220372-45220594(+)$1	222	2	5	8.9999
GUG	chr21:34903029-34903292(-)$1	263	101	104	8.9999
GUG	chr5:142437105-142437353(+)$1	248	10	13	8.9999
GUG	chr4:110681577-110681791(-)$1	214	24	27	8.9999
GUG	chr12:133384505-133384829(-)$1	324	10	13	8.9999
GUG	chr19:13215986-13216202(-)$1	216	68	71	8.9999
GUG	chr6:43167611-43167863(+)$1	252	39	42	8.9999
GUG	chr16:28989245-28989481(+)$1	236	3	6	8.9999
GUG	chr16:89613023-89613269(+)$1	246	142	145	8.9999
GUG	chr1:145441077-145441325(+)$1	248	132	135	8.9999
GUG	chr16:16149848-16150076(+)$1	228	34	37	8.9999
GUG	chr10:103792699-103792947(-)$1	248	18	21	8.9999

#otherMatches

#Struct PSSM
:::	chr11:62601647-62601894(-)$1	247	0	3	8.9999
fff	chr19:55899309-55899587(+)$1	278	14	17	8.9999
mmf	chr11:212511-212807(+)$1	296	19	22	8.9999
[dd	chr12:49317850-49318143(-)$1	293	65	68	8.9999
eeb	chr11:420844-421049(-)$1	205	6	9	8.9999
:::	chr20:34302005-34302208(-)$1	203	6	9	8.9999
EEE	chr5:72189164-72189459(+)$1	295	25	28	8.9999
ood	chr16:53503909-53504163(+)$1	254	67	70	8.9999
::d	chr9:35689117-35689333(-)$1	216	119	122	8.9999
ddd	chr2:85769347-85769574(+)$1	227	71	74	8.9999
e[d	chr7:129330145-129330444(+)$1	299	100	103	8.9999
#ff	chr16:2279520-2279775(+)$1	255	50	53	8.9999
ggg	chr17:78854113-78854345(+)$1	232	46	49	8.9999
C{E	chrX:47085264-47085576(+)$1	312	11	14	8.9999
A{F	chr2:61188538-61188785(-)$1	247	12	15	8.9999
EEE	chr4:120433945-120434217(+)$1	272	22	25	8.9999
dd:	chr14:75576420-75576683(-)$1	263	113	116	8.9999
B{A	chr6:32138103-32138362(-)$1	259	12	15	8.9999
HHH	chr17:34871607-34871829(-)$1	222	32	35	8.9999
ggg	chr7:6681393-6681656(+)$1	263	21	24	8.9999
KII	chr16:16146481-16146718(+)$1	237	14	17	8.9999
C{E	chr21:46906693-46906928(+)$1	235	9	12	8.9999
DDD	chr2:70527870-70528126(-)$1	256	28	31	8.9999
GGG	chr1:1019540-1019814(-)$1	274	3	6	8.9999
ee]	chr4:79293847-79294076(+)$1	229	25	28	8.9999
hhh	chr5:140023109-140023362(+)$1	253	155	158	8.9999
CC{	chr17:80382233-80382465(+)$1	232	52	55	8.9999
ddd	chr19:1881133-1881365(-)$1	232	17	20	8.9999
b[b	chr12:103245363-103245569(-)$1	206	17	20	8.9999
:::	chr16:24817426-24817651(+)$1	225	8	11	8.9999
:GG	chr19:17379492-17379796(+)$1	304	8	11	8.9999
CCC	chr1:19202713-19202925(-)$1	212	38	41	8.9999
ddd	chr17:73826609-73826840(-)$1	231	21	24	8.9999
:A{	chr14:23792485-23792717(+)$1	232	2	5	8.9999
ggg	chr16:15761039-15761313(+)$1	274	5	8	8.9999
EEE	chr14:97010383-97010641(+)$1	258	120	123	8.9999
c$$	chr9:138393680-138393967(+)$1	287	80	83	8.9999
eee	chr1:27741223-27741501(-)$1	278	112	115	8.9999
===	chr12:53852955-53853160(+)$1	205	33	36	8.9999
g""	chr1:23782514-23782754(-)$1	240	112	115	8.9999
A{H	chr4:1801135-1801350(+)$1	215	0	3	8.9999
C{C	chr11:14539340-14539574(-)$1	234	19	22	8.9999
iii	chr3:27453032-27453297(-)$1	265	47	50	8.9999
f""	chr20:62373998-62374243(+)$1	245	25	28	8.9999
ddm	chr1:228593960-228594251(-)$1	291	67	70	8.9999
BB{	chr15:43022224-43022456(-)$1	232	19	22	8.9999
fff	chr22:38028631-38028885(+)$1	254	16	19	8.9999
:::	chr6:13584291-13584558(+)$1	267	1	4	8.9999
EEE	chr19:622719-622968(-)$1	249	27	30	8.9999
d[b	chr13:34404755-34405021(+)$1	266	109	112	8.9999
ddd	chr2:96962178-96962409(-)$1	231	9	12	8.9999
:::	chr20:39983242-39983478(+)$1	236	1	4	8.9999
mmd	chr13:53013132-53013403(-)$1	271	47	50	8.9999
ff#	chr17:79863451-79863683(-)$1	232	10	13	8.9999
ccc	chr19:1244005-1244285(+)$1	280	42	45	8.9999
::D	chr11:73962579-73962865(+)$1	286	1	4	8.9999
[a[	chr4:69198924-69199158(-)$1	234	10	13	8.9999
ffE	chr13:107196268-107196514(-)$1	246	236	239	8.9999
fff	chr5:176738655-176738909(-)$1	254	17	20	8.9999
eee	chr20:42315539-42315799(+)$1	260	32	35	8.9999
bb!	chrX:47058509-47058792(+)$1	283	0	3	8.9999
DDD	chr19:41248380-41248608(-)$1	228	10	13	8.9999
ccn	chr9:134014569-134014853(+)$1	284	149	152	8.9999
ggg	chr12:57567462-57567699(+)$1	237	83	86	8.9999
a]d	chr17:7123882-7124094(+)$1	212	58	61	8.9999
bb[	chr11:70261673-70261925(+)$1	252	76	79	8.9999
gg3	chr1:26508750-26508997(+)$1	247	143	146	8.9999
rrr	chr7:933474-933708(+)$1	234	50	53	8.9999
22d	chr11:372025-372260(+)$1	235	70	73	8.9999
[ee	chr6:43411853-43412115(+)$1	262	150	153	8.9999
CC:	chr15:25315163-25315408(+)$1	245	3	6	8.9999
!a!	chr6:43038974-43039212(+)$1	238	105	108	8.9999
eee	chr1:227921026-227921275(-)$1	249	26	29	8.9999
!bb	chr1:35652705-35652913(-)$1	208	17	20	8.9999
cpp	chr6:31752920-31753143(-)$1	223	11	14	8.9999
:DD	chr19:48248719-48248953(+)$1	234	24	27	8.9999
{A:	chr10:101556802-101557025(+)$1	223	31	34	8.9999
ccl	chr11:46396106-46396317(+)$1	211	24	27	8.9999
FF{	chr17:36863679-36863895(+)$1	216	39	42	8.9999
EEE	chr2:241463199-241463557(-)$1	358	2	5	8.9999
fff	chr12:109210700-109211046(-)$1	346	31	34	8.9999
ddd	chrX:70679388-70679655(+)$1	267	17	20	8.9999
EEE	chr12:10856599-10856850(-)$1	251	63	66	8.9999
EEd	chr2:11752520-11752735(+)$1	215	14	17	8.9999
EEE	chr21:45220372-45220594(+)$1	222	2	5	8.9999
ee]	chr21:34903029-34903292(-)$1	263	101	104	8.9999
DDS	chr5:142437105-142437353(+)$1	248	10	13	8.9999
GGG	chr4:110681577-110681791(-)$1	214	24	27	8.9999
c[d	chr12:133384505-133384829(-)$1	324	10	13	8.9999
ggg	chr19:13215986-13216202(-)$1	216	68	71	8.9999
a]b	chr6:43167611-43167863(+)$1	252	39	42	8.9999
ddd	chr16:28989245-28989481(+)$1	236	3	6	8.9999
ddd	chr16:89613023-89613269(+)$1	246	142	145	8.9999
fff	chr1:145441077-145441325(+)$1	248	132	135	8.9999
bb[	chr16:16149848-16150076(+)$1	228	34	37	8.9999
HHH	chr10:103792699-103792947(-)$1	248	18	21	8.9999

#DB
...	chr11:62601647-62601894(-)$1	1	0	3	8.9999
(((	chr19:55899309-55899587(+)$1	1	14	17	8.9999
..)	chr11:212511-212807(+)$1	1	19	22	8.9999
.((	chr12:49317850-49318143(-)$1	1	65	68	8.9999
(((	chr11:420844-421049(-)$1	1	6	9	8.9999
...	chr20:34302005-34302208(-)$1	1	6	9	8.9999
(((	chr5:72189164-72189459(+)$1	1	25	28	8.9999
..)	chr16:53503909-53504163(+)$1	1	67	70	8.9999
..(	chr9:35689117-35689333(-)$1	1	119	122	8.9999
(((	chr2:85769347-85769574(+)$1	1	71	74	8.9999
(.(	chr7:129330145-129330444(+)$1	1	100	103	8.9999
.((	chr16:2279520-2279775(+)$1	1	50	53	8.9999
)))	chr17:78854113-78854345(+)$1	1	46	49	8.9999
(.(	chrX:47085264-47085576(+)$1	1	11	14	8.9999
(.(	chr2:61188538-61188785(-)$1	1	12	15	8.9999
(((	chr4:120433945-120434217(+)$1	1	22	25	8.9999
)).	chr14:75576420-75576683(-)$1	1	113	116	8.9999
(.(	chr6:32138103-32138362(-)$1	1	12	15	8.9999
(((	chr17:34871607-34871829(-)$1	1	32	35	8.9999
(((	chr7:6681393-6681656(+)$1	1	21	24	8.9999
.((	chr16:16146481-16146718(+)$1	1	14	17	8.9999
(.(	chr21:46906693-46906928(+)$1	1	9	12	8.9999
(((	chr2:70527870-70528126(-)$1	1	28	31	8.9999
(((	chr1:1019540-1019814(-)$1	1	3	6	8.9999
)).	chr4:79293847-79294076(+)$1	1	25	28	8.9999
(((	chr5:140023109-140023362(+)$1	1	155	158	8.9999
((.	chr17:80382233-80382465(+)$1	1	52	55	8.9999
)))	chr19:1881133-1881365(-)$1	1	17	20	8.9999
(.(	chr12:103245363-103245569(-)$1	1	17	20	8.9999
...	chr16:24817426-24817651(+)$1	1	8	11	8.9999
.((	chr19:17379492-17379796(+)$1	1	8	11	8.9999
(((	chr1:19202713-19202925(-)$1	1	38	41	8.9999
(((	chr17:73826609-73826840(-)$1	1	21	24	8.9999
.(.	chr14:23792485-23792717(+)$1	1	2	5	8.9999
(((	chr16:15761039-15761313(+)$1	1	5	8	8.9999
)))	chr14:97010383-97010641(+)$1	1	120	123	8.9999
(..	chr9:138393680-138393967(+)$1	1	80	83	8.9999
)))	chr1:27741223-27741501(-)$1	1	112	115	8.9999
)))	chr12:53852955-53853160(+)$1	1	33	36	8.9999
(..	chr1:23782514-23782754(-)$1	1	112	115	8.9999
(.(	chr4:1801135-1801350(+)$1	1	0	3	8.9999
(.(	chr11:14539340-14539574(-)$1	1	19	22	8.9999
(((	chr3:27453032-27453297(-)$1	1	47	50	8.9999
(..	chr20:62373998-62374243(+)$1	1	25	28	8.9999
((.	chr1:228593960-228594251(-)$1	1	67	70	8.9999
((.	chr15:43022224-43022456(-)$1	1	19	22	8.9999
)))	chr22:38028631-38028885(+)$1	1	16	19	8.9999
...	chr6:13584291-13584558(+)$1	1	1	4	8.9999
(((	chr19:622719-622968(-)$1	1	27	30	8.9999
(.(	chr13:34404755-34405021(+)$1	1	109	112	8.9999
(((	chr2:96962178-96962409(-)$1	1	9	12	8.9999
...	chr20:39983242-39983478(+)$1	1	1	4	8.9999
..)	chr13:53013132-53013403(-)$1	1	47	50	8.9999
((.	chr17:79863451-79863683(-)$1	1	10	13	8.9999
(((	chr19:1244005-1244285(+)$1	1	42	45	8.9999
..(	chr11:73962579-73962865(+)$1	1	1	4	8.9999
.(.	chr4:69198924-69199158(-)$1	1	10	13	8.9999
)))	chr13:107196268-107196514(-)$1	1	236	239	8.9999
(((	chr5:176738655-176738909(-)$1	1	17	20	8.9999
(((	chr20:42315539-42315799(+)$1	1	32	35	8.9999
((.	chrX:47058509-47058792(+)$1	1	0	3	8.9999
(((	chr19:41248380-41248608(-)$1	1	10	13	8.9999
((.	chr9:134014569-134014853(+)$1	1	149	152	8.9999
(((	chr12:57567462-57567699(+)$1	1	83	86	8.9999
).)	chr17:7123882-7124094(+)$1	1	58	61	8.9999
((.	chr11:70261673-70261925(+)$1	1	76	79	8.9999
)).	chr1:26508750-26508997(+)$1	1	143	146	8.9999
...	chr7:933474-933708(+)$1	1	50	53	8.9999
..)	chr11:372025-372260(+)$1	1	70	73	8.9999
.((	chr6:43411853-43412115(+)$1	1	150	153	8.9999
((.	chr15:25315163-25315408(+)$1	1	3	6	8.9999
.(.	chr6:43038974-43039212(+)$1	1	105	108	8.9999
(((	chr1:227921026-227921275(-)$1	1	26	29	8.9999
.((	chr1:35652705-35652913(-)$1	1	17	20	8.9999
(..	chr6:31752920-31753143(-)$1	1	11	14	8.9999
.((	chr19:48248719-48248953(+)$1	1	24	27	8.9999
.(.	chr10:101556802-101557025(+)$1	1	31	34	8.9999
((.	chr11:46396106-46396317(+)$1	1	24	27	8.9999
((.	chr17:36863679-36863895(+)$1	1	39	42	8.9999
(((	chr2:241463199-241463557(-)$1	1	2	5	8.9999
)))	chr12:109210700-109211046(-)$1	1	31	34	8.9999
)))	chrX:70679388-70679655(+)$1	1	17	20	8.9999
(((	chr12:10856599-10856850(-)$1	1	63	66	8.9999
(((	chr2:11752520-11752735(+)$1	1	14	17	8.9999
(((	chr21:45220372-45220594(+)$1	1	2	5	8.9999
)).	chr21:34903029-34903292(-)$1	1	101	104	8.9999
((.	chr5:142437105-142437353(+)$1	1	10	13	8.9999
(((	chr4:110681577-110681791(-)$1	1	24	27	8.9999
(.(	chr12:133384505-133384829(-)$1	1	10	13	8.9999
(((	chr19:13215986-13216202(-)$1	1	68	71	8.9999
).)	chr6:43167611-43167863(+)$1	1	39	42	8.9999
(((	chr16:28989245-28989481(+)$1	1	3	6	8.9999
(((	chr16:89613023-89613269(+)$1	1	142	145	8.9999
)))	chr1:145441077-145441325(+)$1	1	132	135	8.9999
((.	chr16:16149848-16150076(+)$1	1	34	37	8.9999
(((	chr10:103792699-103792947(-)$1	1	18	21	8.9999

#PSSM
G : 0.95	g : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_CDS_m2_run2.nuc.txt

#NT
cccgucccc	chrX:129147707-129148030(+)$1	323	34	43	18.2698
CCCAUCCCC	chr14:73743534-73743901(-)$1	367	302	311	18.3492
CCCCGCCCC	chr22:38693994-38694248(-)$1	254	102	111	18.3492
CCCCUGCCC	chr1:156347165-156347400(+)$1	235	159	168	18.3492
caccucccc	chr20:2816620-2816868(-)$1	248	64	73	18.5079
CCCCACCCC	chr12:57919974-57920248(+)$1	274	30	39	18.5873
CCCCUACCC	chr6:43472836-43473085(+)$1	249	24	33	18.2698
CCCCUCCCU	chr11:60899183-60899490(-)$1	307	146	155	19.2222
CCCUUCCCC	chr7:73011586-73011839(-)$1	253	30	39	18.2698
ccccacccc	chr17:78397632-78398013(+)$1	381	138	147	18.5873
CCCCUCUCC	chr8:61654695-61654968(+)$1	273	192	201	18.2698
UCCCUCCCC	chr12:57111158-57111391(-)$1	233	28	37	19.4603
CCCCUCACC	chr19:3574156-3574452(+)$1	296	21	30	18.1904
CUCCUCCCC	chr22:51019964-51020279(-)$1	315	123	132	18.4285
CCCAUCCCC	chr12:57112311-57112573(-)$1	262	58	67	18.3492
CCCCUCCCC	chr19:54611178-54611462(+)$1	284	67	76	22.8730
CCCCUUCCC	chr5:31526447-31526741(-)$1	294	28	37	18.2698
ACCCUCCCC	chr7:73011777-73012027(-)$1	250	105	114	19.2222
CCCCUCCCU	chr3:47045976-47046273(+)$1	297	284	293	19.2222
UCCCUCCCC	chr19:41255597-41255873(-)$1	276	118	127	19.4603
CCCCUCCAC	chr16:685051-685383(-)$1	332	220	229	18.2698
CCCCUGCCC	chr12:49434267-49434509(-)$1	242	14	23	18.3492
CACCUCCCC	chr17:4883618-4883928(-)$1	310	172	181	18.5079
UCCCUCCCC	chr8:144357160-144357421(+)$1	261	98	107	19.4603
CCCCUCCCU	chr19:6731425-6731700(-)$1	275	112	121	19.2222
CCCCUCCCA	chr1:33236668-33236940(+)$1	272	228	237	18.8253
CCCCUCCCC	chrM:15447-15653(+)$1	206	90	99	22.8730
CCUCUCCCC	chr16:30734899-30735141(+)$1	242	104	113	18.3492
CCACUCCCC	chr1:10166206-10166559(+)$1	353	158	167	18.3492
CCCCUCCCU	chr2:204305285-204305545(-)$1	260	181	190	19.2222
CCCCUCCCC	chr19:6745992-6746238(+)$1	246	23	32	22.8730
CCCCUCCGC	chr6:138752545-138752790(-)$1	245	223	232	18.1904
CCCCUCCAC	chr16:72828922-72829212(-)$1	290	94	103	18.2698
CCCCUCUCC	chr11:46398630-46398912(+)$1	282	95	104	18.2698
CUCCUCCCC	chr17:7126078-7126324(+)$1	246	207	216	18.4285
CCCCUCCCC	chr17:7750913-7751186(+)$1	273	244	253	22.8730
ccccucccc	chr3:47459203-47459470(-)$1	267	110	119	22.8730
CCCCUCCCC	chrM:15409-15629(+)$1	220	128	137	22.8730
CCCCUCCCC	chr5:137803409-137803735(+)$1	326	198	207	22.8730
UCCCUCCCC	chr17:4575925-4576264(-)$1	339	134	143	19.4603
CCCCUCCCU	chr2:204305162-204305450(-)$1	288	86	95	19.2222
UCCCUCCCC	chr12:57111191-57111461(-)$1	270	98	107	19.4603
ccccacccc	chr19:15353772-15354044(-)$1	272	43	52	18.5873
CCCCUCCCC	chr22:51063806-51064114(-)$1	308	112	121	22.8730
ACCCUCCCC	chr19:36223084-36223360(+)$1	276	16	25	19.2222
ccccucccc	chr10:121355868-121356135(-)$1	267	78	87	22.8730
CCCCUCCCA	chr12:57919637-57919870(+)$1	233	120	129	18.8253
CCCCACCCC	chr17:56051866-56052128(-)$1	262	126	135	18.5873
gcccucccc	chr16:89267473-89267782(-)$1	309	140	149	19.3809
CCCCUCCCC	chr12:7046071-7046361(+)$1	290	119	128	22.8730
GCCCUCCCC	chr19:54969732-54969981(+)$1	249	113	122	19.3809
caccucccc	chr17:7417224-7417505(+)$1	281	154	163	18.5079
ccccucccU	chr19:46394206-46394549(-)$1	343	239	248	19.2222
CCUCUCCCC	chr12:6442233-6442521(-)$1	288	16	25	18.3492
CCCCUCCCC	chr12:57919471-57919718(+)$1	247	85	94	22.8730
gcccucccc	chr2:69472424-69472716(+)$1	292	59	68	19.3809
CCACUCCCC	chr22:18301434-18301784(-)$1	350	126	135	18.3492
CCCCUCCCG	chr21:34602628-34602936(+)$1	308	103	112	18.7460
UCCCUCCCC	chr12:57111939-57112222(-)$1	283	28	37	19.4603
GCCCUCCCC	chr19:48197409-48197690(+)$1	281	51	60	19.3809
acccucccc	chr22:37420881-37421145(+)$1	264	240	249	19.2222
CCCCUCCCU	chr6:30611193-30611438(+)$1	245	191	200	19.2222

#otherMatches

#Struct PSSM
GGGGGG:::	chr8:145065422-145065700(+)$1	278	112	121	19.3809
mmbb333cc	chrX:129147707-129148030(+)$1	323	34	43	18.2698
}CCC@@@@@	chr14:73743534-73743901(-)$1	367	302	311	18.3492
eeeccc333	chr22:38693994-38694248(-)$1	254	102	111	18.3492
c22hhhhhh	chr1:156347165-156347400(+)$1	235	159	168	18.3492
:::::::::	chr20:2816620-2816868(-)$1	248	64	73	18.5079
:::CCC{FF	chr12:57919974-57920248(+)$1	274	30	39	18.5873
:::::::::	chr6:43472836-43473085(+)$1	249	24	33	18.2698
dddqqqqqq	chr11:60899183-60899490(-)$1	307	146	155	19.2222
:::::::::	chr7:73011586-73011839(-)$1	253	30	39	18.2698
uuuuuuuud	chr17:78397632-78398013(+)$1	381	138	147	18.5873
eeeee::::	chr8:61654695-61654968(+)$1	273	192	201	18.2698
dtttttttt	chr12:57111158-57111391(-)$1	233	28	37	19.4603
fff[cccmm	chr19:3574156-3574452(+)$1	296	21	30	18.1904
ff]dddd44	chr22:51019964-51020279(-)$1	315	123	132	18.4285
WWWWWWWWW	chr12:57112311-57112573(-)$1	262	58	67	18.3492
EEE::::::	chr19:54611178-54611462(+)$1	284	67	76	22.8730
::::::::c	chr5:31526447-31526741(-)$1	294	28	37	18.2698
@@@@@@@@@	chr7:73011777-73012027(-)$1	250	105	114	19.2222
:::::::::	chr3:47045976-47046273(+)$1	297	284	293	19.2222
ppeeeee22	chr19:41255597-41255873(-)$1	276	118	127	19.4603
hhhhhhh((	chr16:685051-685383(-)$1	332	220	229	18.2698
::::ddddq	chr12:49434267-49434509(-)$1	242	14	23	18.3492
ooccc::::	chr17:4883618-4883928(-)$1	310	172	181	18.5079
qqccc6666	chr8:144357160-144357421(+)$1	261	98	107	19.4603
:::::::::	chr19:6731425-6731700(-)$1	275	112	121	19.2222
:::::::::	chr1:33236668-33236940(+)$1	272	228	237	18.8253
^^^^^^^^^	chrM:15447-15653(+)$1	206	90	99	22.8730
+++++++++	chr16:30734899-30735141(+)$1	242	104	113	18.3492
:::::::::	chr1:10166206-10166559(+)$1	353	158	167	18.3492
:::::::::	chr2:204305285-204305545(-)$1	260	181	190	19.2222
DDDD:::ee	chr19:6745992-6746238(+)$1	246	23	32	22.8730
:::::::::	chr6:138752545-138752790(-)$1	245	223	232	18.1904
sssssssss	chr16:72828922-72829212(-)$1	290	94	103	18.2698
:::::::::	chr11:46398630-46398912(+)$1	282	95	104	18.2698
@@DDDD:dd	chr17:7126078-7126324(+)$1	246	207	216	18.4285
#eeeeeaoo	chr17:7750913-7751186(+)$1	273	244	253	22.8730
$$dddd[dd	chr3:47459203-47459470(-)$1	267	110	119	22.8730
:::::::::	chrM:15409-15629(+)$1	220	128	137	22.8730
>>>>>>>>>	chr5:137803409-137803735(+)$1	326	198	207	22.8730
hhhccc"""	chr17:4575925-4576264(-)$1	339	134	143	19.4603
:::::::::	chr2:204305162-204305450(-)$1	288	86	95	19.2222
dtttttttt	chr12:57111191-57111461(-)$1	270	98	107	19.4603
DDVVVVVVV	chr19:15353772-15354044(-)$1	272	43	52	18.5873
qqqqqccc]	chr22:51063806-51064114(-)$1	308	112	121	22.8730
:::::::::	chr19:36223084-36223360(+)$1	276	16	25	19.2222
f22ccc]a4	chr10:121355868-121356135(-)$1	267	78	87	22.8730
:::::::::	chr12:57919637-57919870(+)$1	233	120	129	18.8253
:::::::::	chr17:56051866-56052128(-)$1	262	126	135	18.5873
ee::::::e	chr16:89267473-89267782(-)$1	309	140	149	19.3809
^^^^^^^^^	chr12:7046071-7046361(+)$1	290	119	128	22.8730
:::::::::	chr19:54969732-54969981(+)$1	249	113	122	19.3809
vvvvvvvvv	chr17:7417224-7417505(+)$1	281	154	163	18.5079
qqqqqqqdd	chr19:46394206-46394549(-)$1	343	239	248	19.2222
dddtttttt	chr12:6442233-6442521(-)$1	288	16	25	18.3492
HHHHHHHHK	chr12:57919471-57919718(+)$1	247	85	94	22.8730
bbqqqqqqq	chr2:69472424-69472716(+)$1	292	59	68	19.3809
LLEEEEEEE	chr22:18301434-18301784(-)$1	350	126	135	18.3492
fcccmmmmc	chr21:34602628-34602936(+)$1	308	103	112	18.7460
eee))))))	chr12:57111939-57112222(-)$1	283	28	37	19.4603
++++++++e	chr19:48197409-48197690(+)$1	281	51	60	19.3809
c[aoooooo	chr22:37420881-37421145(+)$1	264	240	249	19.2222
nnnneeeee	chr6:30611193-30611438(+)$1	245	191	200	19.2222

#DB
((((((...	chr8:145065422-145065700(+)$1	1	112	121	19.3809
..))...))	chrX:129147707-129148030(+)$1	1	34	43	18.2698
.))).....	chr14:73743534-73743901(-)$1	1	302	311	18.3492
))))))...	chr22:38693994-38694248(-)$1	1	102	111	18.3492
)..))))))	chr1:156347165-156347400(+)$1	1	159	168	18.3492
.........	chr20:2816620-2816868(-)$1	1	64	73	18.5079
...(((.((	chr12:57919974-57920248(+)$1	1	30	39	18.5873
.........	chr6:43472836-43473085(+)$1	1	24	33	18.2698
(((......	chr11:60899183-60899490(-)$1	1	146	155	19.2222
.........	chr7:73011586-73011839(-)$1	1	30	39	18.2698
........)	chr17:78397632-78398013(+)$1	1	138	147	18.5873
)))))....	chr8:61654695-61654968(+)$1	1	192	201	18.2698
(........	chr12:57111158-57111391(-)$1	1	28	37	19.4603
(((.(((..	chr19:3574156-3574452(+)$1	1	21	30	18.1904
)).))))..	chr22:51019964-51020279(-)$1	1	123	132	18.4285
.........	chr12:57112311-57112573(-)$1	1	58	67	18.3492
(((......	chr19:54611178-54611462(+)$1	1	67	76	22.8730
........(	chr5:31526447-31526741(-)$1	1	28	37	18.2698
.........	chr7:73011777-73012027(-)$1	1	105	114	19.2222
.........	chr3:47045976-47046273(+)$1	1	284	293	19.2222
..)))))..	chr19:41255597-41255873(-)$1	1	118	127	19.4603
(((((((..	chr16:685051-685383(-)$1	1	220	229	18.2698
....((((.	chr12:49434267-49434509(-)$1	1	14	23	18.3492
..)))....	chr17:4883618-4883928(-)$1	1	172	181	18.5079
..)))....	chr8:144357160-144357421(+)$1	1	98	107	19.4603
.........	chr19:6731425-6731700(-)$1	1	112	121	19.2222
.........	chr1:33236668-33236940(+)$1	1	228	237	18.8253
.........	chrM:15447-15653(+)$1	1	90	99	22.8730
.........	chr16:30734899-30735141(+)$1	1	104	113	18.3492
.........	chr1:10166206-10166559(+)$1	1	158	167	18.3492
.........	chr2:204305285-204305545(-)$1	1	181	190	19.2222
((((...((	chr19:6745992-6746238(+)$1	1	23	32	22.8730
.........	chr6:138752545-138752790(-)$1	1	223	232	18.1904
.........	chr16:72828922-72829212(-)$1	1	94	103	18.2698
.........	chr11:46398630-46398912(+)$1	1	95	104	18.2698
..)))).((	chr17:7126078-7126324(+)$1	1	207	216	18.4285
.((((((..	chr17:7750913-7751186(+)$1	1	244	253	22.8730
..((((.((	chr3:47459203-47459470(-)$1	1	110	119	22.8730
.........	chrM:15409-15629(+)$1	1	128	137	22.8730
.........	chr5:137803409-137803735(+)$1	1	198	207	22.8730
((((((...	chr17:4575925-4576264(-)$1	1	134	143	19.4603
.........	chr2:204305162-204305450(-)$1	1	86	95	19.2222
(........	chr12:57111191-57111461(-)$1	1	98	107	19.4603
((.......	chr19:15353772-15354044(-)$1	1	43	52	18.5873
.....))).	chr22:51063806-51064114(-)$1	1	112	121	22.8730
.........	chr19:36223084-36223360(+)$1	1	16	25	19.2222
)..))).).	chr10:121355868-121356135(-)$1	1	78	87	22.8730
.........	chr12:57919637-57919870(+)$1	1	120	129	18.8253
.........	chr17:56051866-56052128(-)$1	1	126	135	18.5873
))......(	chr16:89267473-89267782(-)$1	1	140	149	19.3809
.........	chr12:7046071-7046361(+)$1	1	119	128	22.8730
.........	chr19:54969732-54969981(+)$1	1	113	122	19.3809
.........	chr17:7417224-7417505(+)$1	1	154	163	18.5079
.......))	chr19:46394206-46394549(-)$1	1	239	248	19.2222
(((......	chr12:6442233-6442521(-)$1	1	16	25	18.3492
((((((((.	chr12:57919471-57919718(+)$1	1	85	94	22.8730
((.......	chr2:69472424-69472716(+)$1	1	59	68	19.3809
..(((((((	chr22:18301434-18301784(-)$1	1	126	135	18.3492
((((....)	chr21:34602628-34602936(+)$1	1	103	112	18.7460
(((......	chr12:57111939-57112222(-)$1	1	28	37	19.4603
........(	chr19:48197409-48197690(+)$1	1	51	60	19.3809
(.(......	chr22:37420881-37421145(+)$1	1	240	249	19.2222
....)))))	chr6:30611193-30611438(+)$1	1	191	200	19.2222

#PSSM
C : 0.65	c : 0.12	U : 0.09	G : 0.04	A : 0.03	g : 0.03	a : 0.01	
C : 0.77	c : 0.14	a : 0.03	U : 0.03	A : 0.01	
C : 0.76	c : 0.17	U : 0.03	A : 0.03	
C : 0.77	c : 0.15	A : 0.03	g : 0.01	U : 0.01	
U : 0.77	u : 0.14	A : 0.03	a : 0.03	G : 0.01	
C : 0.76	c : 0.17	G : 0.03	A : 0.01	U : 0.01	
C : 0.77	c : 0.17	U : 0.03	A : 0.01	
C : 0.77	c : 0.17	A : 0.03	G : 0.01	
C : 0.68	c : 0.15	U : 0.11	A : 0.03	G : 0.01	

#score	1228.3015873015863
#seq	63
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_UTR_m1_run2.nuc.txt

#NT
CUAAC	chr10:60158456-60158740(+)$1	284	77	82	15.0000
CUAAC	chr14:31086911-31087129(+)$1	218	74	79	15.0000
CUAAC	chr2:20111230-20111517(-)$1	287	121	126	15.0000
CUAAC	chr8:144989284-144989551(-)$1	267	107	112	15.0000
CUAAC	chr9:36339415-36339663(-)$1	248	106	111	15.0000
CUAAC	chr19:46287206-46287461(-)$1	255	53	58	15.0000
CUAAC	chr7:73819896-73820159(+)$1	263	26	31	15.0000
CUAAC	chrX:108926696-108926962(-)$1	266	97	102	15.0000
CUAAC	chr4:83276127-83276396(-)$1	269	206	211	15.0000
CUAAC	chr19:46287261-46287559(-)$1	298	151	156	15.0000
CUAAC	chr14:100746305-100746624(+)$1	319	158	163	15.0000
CUAAC	chr6:163994781-163995059(+)$1	278	47	52	15.0000
CUAAC	chr14:21491109-21491341(-)$1	232	5	10	15.0000
CUAAC	chrX:70794344-70794567(+)$1	223	9	14	15.0000
CUAAC	chr19:37099987-37100304(+)$1	317	98	103	15.0000
CUAAC	chr1:151264209-151264468(+)$1	259	106	111	15.0000
CUAAC	chrX:41204246-41204537(+)$1	291	109	114	15.0000
CUAAC	chr1:193222678-193222970(+)$1	292	71	76	15.0000
CUAAC	chr2:233733556-233733869(+)$1	313	103	108	15.0000
cuaac	chr4:110685483-110685710(-)$1	227	83	88	15.0000
CUAAC	chr2:152659022-152659291(-)$1	269	124	129	15.0000
CUAAC	chr7:116594919-116595179(+)$1	260	47	52	15.0000
CUAAC	chr9:95477253-95477535(-)$1	282	126	131	15.0000
CUAAC	chr5:14488488-14488753(+)$1	265	19	24	15.0000
CUAAC	chr14:94843366-94843663(-)$1	297	142	147	15.0000
CUAAC	chr11:32615754-32616016(+)$1	262	123	128	15.0000
CUAAC	chr9:19336651-19336913(+)$1	262	104	109	15.0000
CUAAC	chr19:12242363-12242673(-)$1	310	115	120	15.0000
CUAAC	chr16:1415214-1415470(-)$1	256	111	116	15.0000
cuaac	chr21:45880549-45880793(+)$1	244	85	90	15.0000
CUAAC	chr12:110785574-110785864(+)$1	290	17	22	15.0000
cuaac	chr21:45880628-45880840(+)$1	212	6	11	15.0000
CUAAC	chrX:70794201-70794536(+)$1	335	152	157	15.0000
CUAAC	chr14:31086938-31087190(+)$1	252	47	52	15.0000
cuaac	chr4:140339785-140340061(+)$1	276	73	78	15.0000
CUAAC	chr12:12273449-12273722(-)$1	273	122	127	15.0000
CUAAC	chr1:47143910-47144181(-)$1	271	95	100	15.0000
CUAAC	chr7:2770164-2770435(-)$1	271	32	37	15.0000
CUAAC	chr14:50250172-50250475(-)$1	303	127	132	15.0000
cuaac	chr21:45880593-45880828(+)$1	235	41	46	15.0000
CUAAC	chr19:19291206-19291497(-)$1	291	46	51	15.0000
CUAAC	chr19:57323631-57323884(-)$1	253	27	32	15.0000
CUAAC	chr14:31086894-31087111(+)$1	217	91	96	15.0000
CUAAC	chr14:104152461-104152710(+)$1	249	72	77	15.0000
CUAAC	chr5:148884469-148884724(-)$1	255	75	80	15.0000
CUAAC	chr5:148884721-148884952(-)$1	231	9	14	15.0000
CUAAC	chr3:56656006-56656253(-)$1	247	18	23	15.0000
CUAAC	chr8:30402088-30402431(+)$1	343	135	140	15.0000
cuaac	chr21:45880738-45880947(+)$1	209	20	25	15.0000
CUAAC	chr20:3904530-3904840(+)$1	310	114	119	15.0000
CUAAC	chr10:860306-860607(-)$1	301	106	111	15.0000
CUAAC	chr9:36339332-36339615(-)$1	283	58	63	15.0000
CUAAC	chr13:96232036-96232334(-)$1	298	128	133	15.0000
CUAAC	chr1:205684777-205685012(-)$1	235	84	89	15.0000
CUAAC	chr9:108153137-108153390(+)$1	253	100	105	15.0000
CUAAC	chr9:129599559-129599848(+)$1	289	92	97	15.0000
CUAAC	chr5:148884629-148884845(-)$1	216	196	201	15.0000
CUAAC	chr11:96075400-96075629(-)$1	229	205	210	15.0000
CUAAC	chr12:12273423-12273649(-)$1	226	49	54	15.0000
CUAAC	chr9:95477171-95477453(-)$1	282	44	49	15.0000
CUAAC	chr11:70211903-70212186(+)$1	283	125	130	15.0000
CUAAC	chr10:24834819-24835125(+)$1	306	69	74	15.0000
CUAAC	chr20:3904640-3904926(+)$1	286	4	9	15.0000
CUAAC	chr6:52925721-52926000(-)$1	279	108	113	15.0000
cuaac	chr2:182781259-182781546(+)$1	287	80	85	15.0000
CUAAC	chr1:156213332-156213619(-)$1	287	75	80	15.0000
CUAAC	chr17:55758750-55759055(+)$1	305	102	107	15.0000
cuaac	chr19:57903977-57904315(+)$1	338	120	125	15.0000
CUAAC	chr19:7706680-7707032(+)$1	352	117	122	15.0000
CUAAC	chr17:65335341-65335634(-)$1	293	108	113	15.0000
CUAAC	chr22:29453158-29453500(+)$1	342	161	166	15.0000
CUAAC	chr19:19291297-19291560(-)$1	263	109	114	15.0000
CUAAC	chr17:64804150-64804510(+)$1	360	9	14	15.0000
CUAAC	chrX:67755070-67755312(+)$1	242	101	106	15.0000
CUAAC	chr6:109003163-109003456(+)$1	293	127	132	15.0000

#otherMatches

#Struct PSSM
b[ddd	chr5:148884368-148884619(-)$1	251	30	35	15.0000
dd22g	chr10:60158456-60158740(+)$1	284	77	82	15.0000
eennn	chr14:31086911-31087129(+)$1	218	74	79	15.0000
vvvvv	chr2:20111230-20111517(-)$1	287	121	126	15.0000
>>>>>	chr8:144989284-144989551(-)$1	267	107	112	15.0000
G{EEE	chr9:36339415-36339663(-)$1	248	106	111	15.0000
BB:::	chr19:46287206-46287461(-)$1	255	53	58	15.0000
ffooo	chr7:73819896-73820159(+)$1	263	26	31	15.0000
qqqqd	chrX:108926696-108926962(-)$1	266	97	102	15.0000
dd444	chr4:83276127-83276396(-)$1	269	206	211	15.0000
vvvbb	chr19:46287261-46287559(-)$1	298	151	156	15.0000
B}DDD	chr14:100746305-100746624(+)$1	319	158	163	15.0000
:ffff	chr6:163994781-163995059(+)$1	278	47	52	15.0000
:::::	chr14:21491109-21491341(-)$1	232	5	10	15.0000
:::::	chrX:70794344-70794567(+)$1	223	9	14	15.0000
:::::	chr19:37099987-37100304(+)$1	317	98	103	15.0000
eee==	chr1:151264209-151264468(+)$1	259	106	111	15.0000
::::d	chrX:41204246-41204537(+)$1	291	109	114	15.0000
II:::	chr1:193222678-193222970(+)$1	292	71	76	15.0000
sssss	chr2:233733556-233733869(+)$1	313	103	108	15.0000
:::::	chr4:110685483-110685710(-)$1	227	83	88	15.0000
$$$$b	chr2:152659022-152659291(-)$1	269	124	129	15.0000
ddooo	chr7:116594919-116595179(+)$1	260	47	52	15.0000
DDDBB	chr9:95477253-95477535(-)$1	282	126	131	15.0000
KKHHH	chr5:14488488-14488753(+)$1	265	19	24	15.0000
%%%%%	chr14:94843366-94843663(-)$1	297	142	147	15.0000
:CCC}	chr11:32615754-32616016(+)$1	262	123	128	15.0000
dddcc	chr9:19336651-19336913(+)$1	262	104	109	15.0000
33ddd	chr19:12242363-12242673(-)$1	310	115	120	15.0000
ppppd	chr16:1415214-1415470(-)$1	256	111	116	15.0000
:::::	chr21:45880549-45880793(+)$1	244	85	90	15.0000
ccc##	chr12:110785574-110785864(+)$1	290	17	22	15.0000
:::::	chr21:45880628-45880840(+)$1	212	6	11	15.0000
dddd3	chrX:70794201-70794536(+)$1	335	152	157	15.0000
eennn	chr14:31086938-31087190(+)$1	252	47	52	15.0000
:::::	chr4:140339785-140340061(+)$1	276	73	78	15.0000
ttttt	chr12:12273449-12273722(-)$1	273	122	127	15.0000
^^^^^	chr1:47143910-47144181(-)$1	271	95	100	15.0000
JRRRR	chr7:2770164-2770435(-)$1	271	32	37	15.0000
hhhhh	chr14:50250172-50250475(-)$1	303	127	132	15.0000
:::::	chr21:45880593-45880828(+)$1	235	41	46	15.0000
:::::	chr19:19291206-19291497(-)$1	291	46	51	15.0000
ddd::	chr19:57323631-57323884(-)$1	253	27	32	15.0000
eennn	chr14:31086894-31087111(+)$1	217	91	96	15.0000
rrrbb	chr14:104152461-104152710(+)$1	249	72	77	15.0000
eeeee	chr5:148884469-148884724(-)$1	255	75	80	15.0000
::::D	chr5:148884721-148884952(-)$1	231	9	14	15.0000
EEEEE	chr3:56656006-56656253(-)$1	247	18	23	15.0000
:::::	chr8:30402088-30402431(+)$1	343	135	140	15.0000
:::::	chr21:45880738-45880947(+)$1	209	20	25	15.0000
ddooo	chr20:3904530-3904840(+)$1	310	114	119	15.0000
ggggg	chr10:860306-860607(-)$1	301	106	111	15.0000
:::::	chr9:36339332-36339615(-)$1	283	58	63	15.0000
qqqqd	chr13:96232036-96232334(-)$1	298	128	133	15.0000
dddzz	chr1:205684777-205685012(-)$1	235	84	89	15.0000
^^^^^	chr9:108153137-108153390(+)$1	253	100	105	15.0000
ddd:G	chr9:129599559-129599848(+)$1	289	92	97	15.0000
:dddd	chr5:148884629-148884845(-)$1	216	196	201	15.0000
ffppp	chr11:96075400-96075629(-)$1	229	205	210	15.0000
ttttt	chr12:12273423-12273649(-)$1	226	49	54	15.0000
FNNNN	chr9:95477171-95477453(-)$1	282	44	49	15.0000
eewww	chr11:70211903-70212186(+)$1	283	125	130	15.0000
^^^^^	chr10:24834819-24835125(+)$1	306	69	74	15.0000
ddooo	chr20:3904640-3904926(+)$1	286	4	9	15.0000
3hhhh	chr6:52925721-52926000(-)$1	279	108	113	15.0000
+++++	chr2:182781259-182781546(+)$1	287	80	85	15.0000
cccuu	chr1:156213332-156213619(-)$1	287	75	80	15.0000
ffnnn	chr17:55758750-55759055(+)$1	305	102	107	15.0000
eeeqq	chr19:57903977-57904315(+)$1	338	120	125	15.0000
::::F	chr19:7706680-7707032(+)$1	352	117	122	15.0000
ttttt	chr17:65335341-65335634(-)$1	293	108	113	15.0000
fffff	chr22:29453158-29453500(+)$1	342	161	166	15.0000
MMMMC	chr19:19291297-19291560(-)$1	263	109	114	15.0000
F::::	chr17:64804150-64804510(+)$1	360	9	14	15.0000
ooooo	chrX:67755070-67755312(+)$1	242	101	106	15.0000
[bb[a	chr6:109003163-109003456(+)$1	293	127	132	15.0000

#DB
(.(((	chr5:148884368-148884619(-)$1	1	30	35	15.0000
))..)	chr10:60158456-60158740(+)$1	1	77	82	15.0000
((...	chr14:31086911-31087129(+)$1	1	74	79	15.0000
.....	chr2:20111230-20111517(-)$1	1	121	126	15.0000
.....	chr8:144989284-144989551(-)$1	1	107	112	15.0000
(.(((	chr9:36339415-36339663(-)$1	1	106	111	15.0000
((...	chr19:46287206-46287461(-)$1	1	53	58	15.0000
((...	chr7:73819896-73820159(+)$1	1	26	31	15.0000
....)	chrX:108926696-108926962(-)$1	1	97	102	15.0000
))...	chr4:83276127-83276396(-)$1	1	206	211	15.0000
...))	chr19:46287261-46287559(-)$1	1	151	156	15.0000
).)))	chr14:100746305-100746624(+)$1	1	158	163	15.0000
.((((	chr6:163994781-163995059(+)$1	1	47	52	15.0000
.....	chr14:21491109-21491341(-)$1	1	5	10	15.0000
.....	chrX:70794344-70794567(+)$1	1	9	14	15.0000
.....	chr19:37099987-37100304(+)$1	1	98	103	15.0000
)))((	chr1:151264209-151264468(+)$1	1	106	111	15.0000
....(	chrX:41204246-41204537(+)$1	1	109	114	15.0000
((...	chr1:193222678-193222970(+)$1	1	71	76	15.0000
.....	chr2:233733556-233733869(+)$1	1	103	108	15.0000
.....	chr4:110685483-110685710(-)$1	1	83	88	15.0000
....(	chr2:152659022-152659291(-)$1	1	124	129	15.0000
((...	chr7:116594919-116595179(+)$1	1	47	52	15.0000
(((((	chr9:95477253-95477535(-)$1	1	126	131	15.0000
..(((	chr5:14488488-14488753(+)$1	1	19	24	15.0000
.....	chr14:94843366-94843663(-)$1	1	142	147	15.0000
.))).	chr11:32615754-32616016(+)$1	1	123	128	15.0000
)))))	chr9:19336651-19336913(+)$1	1	104	109	15.0000
..)))	chr19:12242363-12242673(-)$1	1	115	120	15.0000
....)	chr16:1415214-1415470(-)$1	1	111	116	15.0000
.....	chr21:45880549-45880793(+)$1	1	85	90	15.0000
(((..	chr12:110785574-110785864(+)$1	1	17	22	15.0000
.....	chr21:45880628-45880840(+)$1	1	6	11	15.0000
)))).	chrX:70794201-70794536(+)$1	1	152	157	15.0000
((...	chr14:31086938-31087190(+)$1	1	47	52	15.0000
.....	chr4:140339785-140340061(+)$1	1	73	78	15.0000
.....	chr12:12273449-12273722(-)$1	1	122	127	15.0000
.....	chr1:47143910-47144181(-)$1	1	95	100	15.0000
(....	chr7:2770164-2770435(-)$1	1	32	37	15.0000
)))))	chr14:50250172-50250475(-)$1	1	127	132	15.0000
.....	chr21:45880593-45880828(+)$1	1	41	46	15.0000
.....	chr19:19291206-19291497(-)$1	1	46	51	15.0000
)))..	chr19:57323631-57323884(-)$1	1	27	32	15.0000
((...	chr14:31086894-31087111(+)$1	1	91	96	15.0000
...))	chr14:104152461-104152710(+)$1	1	72	77	15.0000
(((((	chr5:148884469-148884724(-)$1	1	75	80	15.0000
....(	chr5:148884721-148884952(-)$1	1	9	14	15.0000
(((((	chr3:56656006-56656253(-)$1	1	18	23	15.0000
.....	chr8:30402088-30402431(+)$1	1	135	140	15.0000
.....	chr21:45880738-45880947(+)$1	1	20	25	15.0000
((...	chr20:3904530-3904840(+)$1	1	114	119	15.0000
)))((	chr10:860306-860607(-)$1	1	106	111	15.0000
.....	chr9:36339332-36339615(-)$1	1	58	63	15.0000
....)	chr13:96232036-96232334(-)$1	1	128	133	15.0000
(((..	chr1:205684777-205685012(-)$1	1	84	89	15.0000
.....	chr9:108153137-108153390(+)$1	1	100	105	15.0000
))).(	chr9:129599559-129599848(+)$1	1	92	97	15.0000
.((((	chr5:148884629-148884845(-)$1	1	196	201	15.0000
((...	chr11:96075400-96075629(-)$1	1	205	210	15.0000
.....	chr12:12273423-12273649(-)$1	1	49	54	15.0000
(....	chr9:95477171-95477453(-)$1	1	44	49	15.0000
((...	chr11:70211903-70212186(+)$1	1	125	130	15.0000
.....	chr10:24834819-24835125(+)$1	1	69	74	15.0000
((...	chr20:3904640-3904926(+)$1	1	4	9	15.0000
.))))	chr6:52925721-52926000(-)$1	1	108	113	15.0000
.....	chr2:182781259-182781546(+)$1	1	80	85	15.0000
(((..	chr1:156213332-156213619(-)$1	1	75	80	15.0000
((...	chr17:55758750-55759055(+)$1	1	102	107	15.0000
(((..	chr19:57903977-57904315(+)$1	1	120	125	15.0000
....(	chr19:7706680-7707032(+)$1	1	117	122	15.0000
.....	chr17:65335341-65335634(-)$1	1	108	113	15.0000
)))))	chr22:29453158-29453500(+)$1	1	161	166	15.0000
....(	chr19:19291297-19291560(-)$1	1	109	114	15.0000
(....	chr17:64804150-64804510(+)$1	1	9	14	15.0000
.....	chrX:67755070-67755312(+)$1	1	101	106	15.0000
.((.(	chr6:109003163-109003456(+)$1	1	127	132	15.0000

#PSSM
C : 0.89	c : 0.10	
U : 0.89	u : 0.10	
A : 0.89	a : 0.10	
A : 0.89	a : 0.10	
C : 0.89	c : 0.10	

#score	1140.0000000000005
#seq	76
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_UTR_m1_run2.nuc.txt

#NT
ugugguuuu	chr1:207523414-207523643(+)$1	229	48	57	13.2500
ugucuuuuu	chr4:1385562-1385789(+)$1	227	210	219	17.3333
CGUAUUUUU	chr21:38458801-38459057(+)$1	256	2	11	15.0000
UGUAUUGUU	chr17:29632338-29632613(+)$1	275	235	244	14.8333
uguaguuuu	chr11:14358563-14358806(-)$1	243	166	175	15.3333
UGCAUUUUU	chr12:49085194-49085430(-)$1	236	200	209	16.0000
UGUAAUUUU	chr20:23356915-23357169(-)$1	254	91	100	15.0833
UAUGUUUUU	chr1:20235102-20235313(+)$1	211	18	27	14.0000
UCUUUUUUU	chr4:3513056-3513333(-)$1	277	130	139	13.7500
AAUAUUUUU	chr1:20236681-20236934(+)$1	253	201	210	12.1666
uguaguucu	chr11:88056656-88056906(-)$1	250	0	9	11.6666
UGAAUUUUG	chr11:3011162-3011402(-)$1	240	54	63	11.9166
UGUAUUGUU	chr2:169721503-169721765(-)$1	262	237	246	14.8333
UGUCUUUAU	chr1:20235585-20235827(+)$1	242	128	137	13.5000
uguauuucu	chr7:155571386-155571628(+)$1	242	89	98	15.6666
UGUGUUUUG	chr17:29632280-29632538(+)$1	258	194	203	13.1666
UUUAUUUCU	chr1:20235285-20235518(+)$1	233	9	18	12.5833
UUUAUUUCU	chr1:20235206-20235454(+)$1	248	88	97	12.5833
UGAAUUUUU	chr11:3010357-3010617(-)$1	260	235	244	16.0000
ugucuuuuu	chr4:1386063-1386340(+)$1	277	108	117	17.3333
UUUUUUUUU	chr15:93443364-93443621(+)$1	257	92	101	14.0000
UUUAUUUUU	chr1:20236103-20236366(+)$1	263	210	219	16.2500
UGGGUUUUU	chr1:20234939-20235191(+)$1	252	30	39	13.9166
UGCAUUUUU	chr12:49085095-49085321(-)$1	226	91	100	16.0000
UGUCAUUUU	chr3:196075382-196075634(-)$1	252	25	34	13.0833
AGUCUUUUU	chr11:3011202-3011442(-)$1	240	1	10	13.4166
uguguuucu	chr4:1385467-1385726(+)$1	259	1	10	13.5833
UGUCUUUAU	chr1:20235671-20235937(+)$1	266	42	51	13.5000
UGUAUUUUA	chr3:41241625-41241872(+)$1	247	225	234	14.9166
UUUUUUUUU	chr1:246646837-246647078(-)$1	241	46	55	14.0000
UCUAUUUUU	chr20:23357353-23357589(-)$1	236	46	55	16.0000
UUUGUUUUU	chr12:49084047-49084296(-)$1	249	19	28	14.1666
UGUUUUUGU	chr7:104752274-104752544(-)$1	270	133	142	13.2500
UGGAGUUUU	chr21:30671706-30671944(+)$1	238	170	179	12.0000
UGAAUUUUU	chr11:3010297-3010557(-)$1	260	175	184	16.0000
UGUCUUUUG	chr1:20235526-20235756(+)$1	230	34	43	13.2500
AGUAUUUUU	chr20:23355375-23355619(-)$1	244	161	170	15.4166
UGUAUUUUU	chr15:28508123-28508384(-)$1	261	57	66	19.3333
UACAUUUUU	chr10:90580133-90580359(+)$1	226	215	224	12.7500
AGCAUUUUU	chr1:20235825-20236060(+)$1	235	75	84	12.0833
UGGAGUUUU	chr11:120207732-120208063(+)$1	331	91	100	12.0000
UGUAUUGUU	chr17:29632440-29632688(+)$1	248	133	142	14.8333
UGUAUUUUU	chr15:28508184-28508421(-)$1	237	94	103	19.3333
uguuuuuuu	chr16:81031943-81032182(-)$1	239	209	218	17.0833
uguauuugu	chr4:1385787-1386036(+)$1	249	230	239	15.5000
ugaauuuuu	chr4:1386821-1387063(+)$1	242	189	198	16.0000
uguuuuuuu	chr16:81031841-81032055(-)$1	214	82	91	17.0833
UGAAUUUUU	chr11:3010218-3010476(-)$1	258	94	103	16.0000
UGUCUUUGU	chr12:133404892-133405105(-)$1	213	123	132	13.5000
UCUCUUUUU	chr9:37766998-37767296(+)$1	298	92	101	14.0000
UCUAUUUUU	chr20:23357259-23357550(-)$1	291	7	16	16.0000
UGGAUUUUG	chr22:45714200-45714466(+)$1	266	222	231	11.9166
UGUGUUUUG	chr11:3010980-3011203(-)$1	223	47	56	13.1666
UGUCUGUUU	chr1:20235995-20236245(+)$1	250	102	111	12.5000
uguuuuuuu	chr12:72255091-72255351(+)$1	260	81	90	17.0833
AGCAUUUUU	chr1:20235810-20236025(+)$1	215	90	99	12.0833
UGGGUUUUU	chr1:20234862-20235130(+)$1	268	107	116	13.9166
UUUAUUUAU	chr8:109254391-109254620(-)$1	229	151	160	12.4166
AAUAUUUUU	chr1:20236791-20237008(+)$1	217	91	100	12.1666

#otherMatches

#Struct PSSM
xxxxeeeee	chr1:20235025-20235264(+)$1	239	95	104	14.0000
lbb]eeeee	chr1:207523414-207523643(+)$1	229	48	57	13.2500
:::::::::	chr4:1385562-1385789(+)$1	227	210	219	17.3333
IIIIIIIII	chr21:38458801-38459057(+)$1	256	2	11	15.0000
::::::::D	chr17:29632338-29632613(+)$1	275	235	244	14.8333
[ccc[eeee	chr11:14358563-14358806(-)$1	243	166	175	15.3333
:cccppppp	chr12:49085194-49085430(-)$1	236	200	209	16.0000
ggcccrrrr	chr20:23356915-23357169(-)$1	254	91	100	15.0833
ooooodddd	chr1:20235102-20235313(+)$1	211	18	27	14.0000
dd:::::dd	chr4:3513056-3513333(-)$1	277	130	139	13.7500
iiooooooi	chr1:20236681-20236934(+)$1	253	201	210	12.1666
:DDDD{BB{	chr11:88056656-88056906(-)$1	250	0	9	11.6666
DD{FFFFFF	chr11:3011162-3011402(-)$1	240	54	63	11.9166
fcccqqqqq	chr2:169721503-169721765(-)$1	262	237	246	14.8333
!ddddqqqq	chr1:20235585-20235827(+)$1	242	128	137	13.5000
!cccwwwww	chr7:155571386-155571628(+)$1	242	89	98	15.6666
qbb]eeeee	chr17:29632280-29632538(+)$1	258	194	203	13.1666
HHHH:::::	chr1:20235285-20235518(+)$1	233	9	18	12.5833
ddddIIIII	chr1:20235206-20235454(+)$1	248	88	97	12.5833
!awwwwwww	chr11:3010357-3010617(-)$1	260	235	244	16.0000
:IIIIIIII	chr4:1386063-1386340(+)$1	277	108	117	17.3333
ggg[eeeee	chr15:93443364-93443621(+)$1	257	92	101	14.0000
22=======	chr1:20236103-20236366(+)$1	263	210	219	16.2500
ssssssscc	chr1:20234939-20235191(+)$1	252	30	39	13.9166
:cccppppp	chr12:49085095-49085321(-)$1	226	91	100	16.0000
:::::::::	chr3:196075382-196075634(-)$1	252	25	34	13.0833
DDD::::::	chr11:3011202-3011442(-)$1	240	1	10	13.4166
:::::::::	chr4:1385467-1385726(+)$1	259	1	10	13.5833
!ddddqqqq	chr1:20235671-20235937(+)$1	266	42	51	13.5000
dd:::::::	chr3:41241625-41241872(+)$1	247	225	234	14.9166
d========	chr1:246646837-246647078(-)$1	241	46	55	14.0000
iiii333cc	chr20:23357353-23357589(-)$1	236	46	55	16.0000
ggggg::HH	chr12:49084047-49084296(-)$1	249	19	28	14.1666
[eeeeemmm	chr7:104752274-104752544(-)$1	270	133	142	13.2500
pffffff::	chr21:30671706-30671944(+)$1	238	170	179	12.0000
gg22ggggg	chr11:3010297-3010557(-)$1	260	175	184	16.0000
bbccc22dd	chr1:20235526-20235756(+)$1	230	34	43	13.2500
CC~~~~EEE	chr20:23355375-23355619(-)$1	244	161	170	15.4166
mffffff33	chr15:28508123-28508384(-)$1	261	57	66	19.3333
:::::::::	chr10:90580133-90580359(+)$1	226	215	224	12.7500
nbb]fffff	chr1:20235825-20236060(+)$1	235	75	84	12.0833
ffffff22g	chr11:120207732-120208063(+)$1	331	91	100	12.0000
ccc[dddd"	chr17:29632440-29632688(+)$1	248	133	142	14.8333
mffffff33	chr15:28508184-28508421(-)$1	237	94	103	19.3333
eeeeqqqqq	chr16:81031943-81032182(-)$1	239	209	218	17.0833
2bb]eeeee	chr4:1385787-1386036(+)$1	249	230	239	15.5000
ddd::::::	chr4:1386821-1387063(+)$1	242	189	198	16.0000
ccrrrrrrr	chr16:81031841-81032055(-)$1	214	82	91	17.0833
gg22ggggg	chr11:3010218-3010476(-)$1	258	94	103	16.0000
:::::::::	chr12:133404892-133405105(-)$1	213	123	132	13.5000
C}DDDD~~~	chr9:37766998-37767296(+)$1	298	92	101	14.0000
JJJJJJJJJ	chr20:23357259-23357550(-)$1	291	7	16	16.0000
dd!!cccoo	chr22:45714200-45714466(+)$1	266	222	231	11.9166
h]bb4444c	chr11:3010980-3011203(-)$1	223	47	56	13.1666
qdddd::hh	chr1:20235995-20236245(+)$1	250	102	111	12.5000
2dddd333d	chr12:72255091-72255351(+)$1	260	81	90	17.0833
nbb]fffff	chr1:20235810-20236025(+)$1	215	90	99	12.0833
dd]dddd]a	chr1:20234862-20235130(+)$1	268	107	116	13.9166
vvvvvvvvv	chr8:109254391-109254620(-)$1	229	151	160	12.4166
hhooooooh	chr1:20236791-20237008(+)$1	217	91	100	12.1666

#DB
....)))))	chr1:20235025-20235264(+)$1	1	95	104	14.0000
.)).)))))	chr1:207523414-207523643(+)$1	1	48	57	13.2500
.........	chr4:1385562-1385789(+)$1	1	210	219	17.3333
(((((((((	chr21:38458801-38459057(+)$1	1	2	11	15.0000
........)	chr17:29632338-29632613(+)$1	1	235	244	14.8333
.(((.((((	chr11:14358563-14358806(-)$1	1	166	175	15.3333
.(((.....	chr12:49085194-49085430(-)$1	1	200	209	16.0000
(((((....	chr20:23356915-23357169(-)$1	1	91	100	15.0833
.....))))	chr1:20235102-20235313(+)$1	1	18	27	14.0000
)).....((	chr4:3513056-3513333(-)$1	1	130	139	13.7500
((......)	chr1:20236681-20236934(+)$1	1	201	210	12.1666
.((((.((.	chr11:88056656-88056906(-)$1	1	0	9	11.6666
((.((((((	chr11:3011162-3011402(-)$1	1	54	63	11.9166
((((.....	chr2:169721503-169721765(-)$1	1	237	246	14.8333
.((((....	chr1:20235585-20235827(+)$1	1	128	137	13.5000
.(((.....	chr7:155571386-155571628(+)$1	1	89	98	15.6666
.)).)))))	chr17:29632280-29632538(+)$1	1	194	203	13.1666
((((.....	chr1:20235285-20235518(+)$1	1	9	18	12.5833
))))(((((	chr1:20235206-20235454(+)$1	1	88	97	12.5833
.(.......	chr11:3010357-3010617(-)$1	1	235	244	16.0000
.))))))))	chr4:1386063-1386340(+)$1	1	108	117	17.3333
(((.(((((	chr15:93443364-93443621(+)$1	1	92	101	14.0000
..)))))))	chr1:20236103-20236366(+)$1	1	210	219	16.2500
.......))	chr1:20234939-20235191(+)$1	1	30	39	13.9166
.(((.....	chr12:49085095-49085321(-)$1	1	91	100	16.0000
.........	chr3:196075382-196075634(-)$1	1	25	34	13.0833
(((......	chr11:3011202-3011442(-)$1	1	1	10	13.4166
.........	chr4:1385467-1385726(+)$1	1	1	10	13.5833
.((((....	chr1:20235671-20235937(+)$1	1	42	51	13.5000
)).......	chr3:41241625-41241872(+)$1	1	225	234	14.9166
)))))))))	chr1:246646837-246647078(-)$1	1	46	55	14.0000
))))...))	chr20:23357353-23357589(-)$1	1	46	55	16.0000
)))))..((	chr12:49084047-49084296(-)$1	1	19	28	14.1666
.(((((...	chr7:104752274-104752544(-)$1	1	133	142	13.2500
.))))))..	chr21:30671706-30671944(+)$1	1	170	179	12.0000
))..)))))	chr11:3010297-3010557(-)$1	1	175	184	16.0000
)))))..))	chr1:20235526-20235756(+)$1	1	34	43	13.2500
))....)))	chr20:23355375-23355619(-)$1	1	161	170	15.4166
.))))))..	chr15:28508123-28508384(-)$1	1	57	66	19.3333
.........	chr10:90580133-90580359(+)$1	1	215	224	12.7500
.)).)))))	chr1:20235825-20236060(+)$1	1	75	84	12.0833
))))))..)	chr11:120207732-120208063(+)$1	1	91	100	12.0000
(((.((((.	chr17:29632440-29632688(+)$1	1	133	142	14.8333
.))))))..	chr15:28508184-28508421(-)$1	1	94	103	19.3333
((((.....	chr16:81031943-81032182(-)$1	1	209	218	17.0833
.)).)))))	chr4:1385787-1386036(+)$1	1	230	239	15.5000
)))......	chr4:1386821-1387063(+)$1	1	189	198	16.0000
((.......	chr16:81031841-81032055(-)$1	1	82	91	17.0833
))..)))))	chr11:3010218-3010476(-)$1	1	94	103	16.0000
.........	chr12:133404892-133405105(-)$1	1	123	132	13.5000
).))))...	chr9:37766998-37767296(+)$1	1	92	101	14.0000
(((((((((	chr20:23357259-23357550(-)$1	1	7	16	16.0000
((..(((..	chr22:45714200-45714466(+)$1	1	222	231	11.9166
).))....)	chr11:3010980-3011203(-)$1	1	47	56	13.1666
.))))..((	chr1:20235995-20236245(+)$1	1	102	111	12.5000
.))))...)	chr12:72255091-72255351(+)$1	1	81	90	17.0833
.)).)))))	chr1:20235810-20236025(+)$1	1	90	99	12.0833
)).)))).)	chr1:20234862-20235130(+)$1	1	107	116	13.9166
.........	chr8:109254391-109254620(-)$1	1	151	160	12.4166
((......)	chr1:20236791-20237008(+)$1	1	91	100	12.1666

#PSSM
U : 0.68	u : 0.19	A : 0.09	C : 0.01	
G : 0.53	g : 0.19	U : 0.11	A : 0.08	C : 0.06	
U : 0.56	u : 0.18	C : 0.08	G : 0.08	A : 0.06	a : 0.01	
A : 0.48	C : 0.13	G : 0.11	a : 0.08	U : 0.06	u : 0.05	g : 0.03	c : 0.03	
U : 0.73	u : 0.15	g : 0.05	A : 0.03	G : 0.03	
U : 0.78	u : 0.19	G : 0.01	
U : 0.75	u : 0.19	G : 0.05	
U : 0.68	u : 0.13	c : 0.05	A : 0.05	C : 0.03	G : 0.03	g : 0.01	
U : 0.70	u : 0.19	G : 0.08	A : 0.01	

#score	863.5000000000003
#seq	60
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_UTR_m3_run2.nuc.txt

#NT
UCC	chr7:27565034-27565297(-)$1	263	12	15	8.9999
UCC	chr18:12725448-12725724(+)$1	276	63	66	8.9999
UCC	chr8:74463815-74464084(-)$1	269	61	64	8.9999
UCC	chr7:108214541-108214889(+)$1	348	42	45	8.9999
UCC	chr12:110784235-110784517(+)$1	282	50	53	8.9999
UCC	chr17:76792230-76792479(-)$1	249	23	26	8.9999
UCC	chr19:16212286-16212502(+)$1	216	49	52	8.9999
UCC	chr6:30692325-30692559(+)$1	234	34	37	8.9999
UCC	chr12:53805602-53805877(+)$1	275	13	16	8.9999
UCC	chr1:161928622-161928876(+)$1	254	64	67	8.9999
UCC	chr6:155154657-155154899(+)$1	242	158	161	8.9999
UCC	chr15:52358295-52358534(+)$1	239	3	6	8.9999
UCC	chr3:88107864-88108081(-)$1	217	18	21	8.9999
UCC	chr10:60154863-60155119(+)$1	256	203	206	8.9999
UCC	chr16:69362351-69362600(-)$1	249	24	27	8.9999
UCC	chr11:33162987-33163281(-)$1	294	25	28	8.9999
UCC	chr10:98723635-98724029(+)$1	394	188	191	8.9999
UCC	chr3:113530577-113530811(+)$1	234	114	117	8.9999
UCC	chr18:56996849-56997099(-)$1	250	59	62	8.9999
UCC	chr14:39501369-39501646(-)$1	277	18	21	8.9999
UCC	chr12:53873365-53873578(+)$1	213	28	31	8.9999
UCC	chr2:48132245-48132489(-)$1	244	57	60	8.9999
UCC	chr1:110135745-110136013(+)$1	268	29	32	8.9999
UCC	chr4:57327157-57327415(+)$1	258	29	32	8.9999
UCC	chr14:75548806-75549085(-)$1	279	63	66	8.9999
UCC	chr11:118472111-118472355(+)$1	244	152	155	8.9999
UCC	chr6:105725680-105725950(-)$1	270	18	21	8.9999
UCC	chr11:118952507-118952758(+)$1	251	7	10	8.9999
UCC	chr1:114519780-114520031(+)$1	251	66	69	8.9999
UCC	chr17:7757307-7757531(+)$1	224	99	102	8.9999
UCC	chr10:72643271-72643525(-)$1	254	5	8	8.9999
UCC	chr12:124081494-124081774(+)$1	280	0	3	8.9999
UCC	chr1:45976777-45977019(-)$1	242	4	7	8.9999
UCC	chr12:67707576-67707816(+)$1	240	113	116	8.9999
UCC	chr22:38686798-38687022(-)$1	224	43	46	8.9999
UCC	chr19:1478874-1479150(-)$1	276	133	136	8.9999
UCC	chr1:115260213-115260422(-)$1	209	64	67	8.9999
UCC	chr1:205056764-205057048(-)$1	284	1	4	8.9999
UCC	chr15:66180230-66180445(+)$1	215	66	69	8.9999
UCC	chr6:31797759-31798002(+)$1	243	117	120	8.9999
UCC	chr16:18802930-18803160(-)$1	230	44	47	8.9999
UCC	chr7:116146136-116146379(+)$1	243	123	126	8.9999
UCC	chr8:98863692-98863926(+)$1	234	215	218	8.9999
UCC	chr3:5026462-5026707(+)$1	245	3	6	8.9999
UCC	chr2:160624630-160624884(+)$1	254	20	23	8.9999
UCC	chr6:160526429-160526689(+)$1	260	15	18	8.9999
UCC	chr1:9989164-9989432(-)$1	268	147	150	8.9999
UCC	chr8:131064636-131064959(-)$1	323	44	47	8.9999
UCC	chr20:417826-418069(-)$1	243	97	100	8.9999
UCC	chr1:32636756-32636986(+)$1	230	111	114	8.9999
UCC	chr5:108670937-108671193(-)$1	256	55	58	8.9999
UCC	chr2:152659281-152659578(-)$1	297	31	34	8.9999
UCC	chr20:34292171-34292419(-)$1	248	1	4	8.9999
UCC	chr17:79476963-79477200(-)$1	237	212	215	8.9999
UCC	chr11:34121008-34121248(+)$1	240	33	36	8.9999
UCC	chr2:89050257-89050511(+)$1	254	102	105	8.9999
ucc	chr10:3171248-3171527(+)$1	279	12	15	8.9999
UCC	chr2:198256844-198257107(-)$1	263	206	209	8.9999
UCC	chr1:54497383-54497630(-)$1	247	70	73	8.9999
ucc	chr4:77996903-77997138(-)$1	235	1	4	8.9999
UCC	chr11:59342491-59342786(-)$1	295	32	35	8.9999
UCC	chr10:75881660-75881919(-)$1	259	48	51	8.9999
UCC	chr7:145813608-145813863(+)$1	255	1	4	8.9999
UCC	chr7:6513713-6513933(-)$1	220	0	3	8.9999
UCC	chr12:6857391-6857650(-)$1	259	40	43	8.9999
UCC	chr5:43290952-43291214(-)$1	262	175	178	8.9999
UCC	chr7:108213716-108213996(+)$1	280	103	106	8.9999
UCC	chr5:179156916-179157130(+)$1	214	46	49	8.9999
UCC	chr12:56366290-56366545(+)$1	255	62	65	8.9999
UCC	chr7:6200235-6200495(+)$1	260	17	20	8.9999
UCC	chr8:59495180-59495437(+)$1	257	112	115	8.9999
ucc	chr4:89629016-89629271(+)$1	255	9	12	8.9999
UCC	chr18:13726672-13726936(+)$1	264	25	28	8.9999
UCC	chr1:202696544-202696802(-)$1	258	15	18	8.9999
UCC	chr1:45468656-45468897(-)$1	241	43	46	8.9999
UCC	chr5:96371085-96371314(+)$1	229	166	169	8.9999
UCC	chr6:32136038-32136252(-)$1	214	70	73	8.9999
UCC	chr21:34915393-34915643(+)$1	250	54	57	8.9999
UCC	chr1:224577125-224577337(-)$1	212	29	32	8.9999
UCC	chr11:108344715-108344966(-)$1	251	105	108	8.9999
UCC	chr17:55757046-55757305(+)$1	259	108	111	8.9999
UCC	chr17:30696723-30696989(+)$1	266	6	9	8.9999
UCC	chrX:154506823-154507086(-)$1	263	0	3	8.9999
UCC	chr19:6441058-6441310(-)$1	252	12	15	8.9999
UCC	chr4:183811170-183811456(-)$1	286	60	63	8.9999
UCC	chrX:23803960-23804230(+)$1	270	37	40	8.9999
UCC	chr2:232574753-232574995(+)$1	242	5	8	8.9999
UCC	chr12:49330390-49330673(-)$1	283	18	21	8.9999
UCC	chr22:41855764-41856012(-)$1	248	19	22	8.9999
UCC	chr4:140098104-140098358(-)$1	254	96	99	8.9999
UCC	chr7:30407204-30407456(+)$1	252	105	108	8.9999
UCC	chr10:88194970-88195239(-)$1	269	6	9	8.9999
UCC	chr2:20232460-20232753(-)$1	293	87	90	8.9999
UCC	chr6:30881735-30881977(+)$1	242	19	22	8.9999
UCC	chr17:73316008-73316270(-)$1	262	60	63	8.9999

#otherMatches

#Struct PSSM
:::	chr1:1190080-1190354(-)$1	274	27	30	8.9999
BB:	chr7:27565034-27565297(-)$1	263	12	15	8.9999
==:	chr18:12725448-12725724(+)$1	276	63	66	8.9999
:::	chr8:74463815-74464084(-)$1	269	61	64	8.9999
EMM	chr7:108214541-108214889(+)$1	348	42	45	8.9999
ffo	chr12:110784235-110784517(+)$1	282	50	53	8.9999
lcc	chr17:76792230-76792479(-)$1	249	23	26	8.9999
33d	chr19:16212286-16212502(+)$1	216	49	52	8.9999
e::	chr6:30692325-30692559(+)$1	234	34	37	8.9999
FF:	chr12:53805602-53805877(+)$1	275	13	16	8.9999
EE}	chr1:161928622-161928876(+)$1	254	64	67	8.9999
eee	chr6:155154657-155154899(+)$1	242	158	161	8.9999
CCN	chr15:52358295-52358534(+)$1	239	3	6	8.9999
zzz	chr3:88107864-88108081(-)$1	217	18	21	8.9999
555	chr10:60154863-60155119(+)$1	256	203	206	8.9999
b22	chr16:69362351-69362600(-)$1	249	24	27	8.9999
:::	chr11:33162987-33163281(-)$1	294	25	28	8.9999
ee!	chr10:98723635-98724029(+)$1	394	188	191	8.9999
ccc	chr3:113530577-113530811(+)$1	234	114	117	8.9999
ee!	chr18:56996849-56997099(-)$1	250	59	62	8.9999
RRR	chr14:39501369-39501646(-)$1	277	18	21	8.9999
GGG	chr12:53873365-53873578(+)$1	213	28	31	8.9999
:::	chr2:48132245-48132489(-)$1	244	57	60	8.9999
cco	chr1:110135745-110136013(+)$1	268	29	32	8.9999
GGO	chr4:57327157-57327415(+)$1	258	29	32	8.9999
33g	chr14:75548806-75549085(-)$1	279	63	66	8.9999
5dd	chr11:118472111-118472355(+)$1	244	152	155	8.9999
eee	chr6:105725680-105725950(-)$1	270	18	21	8.9999
:::	chr11:118952507-118952758(+)$1	251	7	10	8.9999
===	chr1:114519780-114520031(+)$1	251	66	69	8.9999
444	chr17:7757307-7757531(+)$1	224	99	102	8.9999
{EE	chr10:72643271-72643525(-)$1	254	5	8	8.9999
:DD	chr12:124081494-124081774(+)$1	280	0	3	8.9999
:::	chr1:45976777-45977019(-)$1	242	4	7	8.9999
oob	chr12:67707576-67707816(+)$1	240	113	116	8.9999
ddd	chr22:38686798-38687022(-)$1	224	43	46	8.9999
eed	chr19:1478874-1479150(-)$1	276	133	136	8.9999
:::	chr1:115260213-115260422(-)$1	209	64	67	8.9999
::E	chr1:205056764-205057048(-)$1	284	1	4	8.9999
:::	chr15:66180230-66180445(+)$1	215	66	69	8.9999
ree	chr6:31797759-31798002(+)$1	243	117	120	8.9999
ccc	chr16:18802930-18803160(-)$1	230	44	47	8.9999
i''	chr7:116146136-116146379(+)$1	243	123	126	8.9999
fff	chr8:98863692-98863926(+)$1	234	215	218	8.9999
EE{	chr3:5026462-5026707(+)$1	245	3	6	8.9999
BBF	chr2:160624630-160624884(+)$1	254	20	23	8.9999
c&&	chr6:160526429-160526689(+)$1	260	15	18	8.9999
mbb	chr1:9989164-9989432(-)$1	268	147	150	8.9999
>>>	chr8:131064636-131064959(-)$1	323	44	47	8.9999
e33	chr20:417826-418069(-)$1	243	97	100	8.9999
===	chr1:32636756-32636986(+)$1	230	111	114	8.9999
J::	chr5:108670937-108671193(-)$1	256	55	58	8.9999
ddd	chr2:152659281-152659578(-)$1	297	31	34	8.9999
:::	chr20:34292171-34292419(-)$1	248	1	4	8.9999
ddd	chr17:79476963-79477200(-)$1	237	212	215	8.9999
ddd	chr11:34121008-34121248(+)$1	240	33	36	8.9999
e""	chr2:89050257-89050511(+)$1	254	102	105	8.9999
JJJ	chr10:3171248-3171527(+)$1	279	12	15	8.9999
___	chr2:198256844-198257107(-)$1	263	206	209	8.9999
:::	chr1:54497383-54497630(-)$1	247	70	73	8.9999
:::	chr4:77996903-77997138(-)$1	235	1	4	8.9999
CCC	chr11:59342491-59342786(-)$1	295	32	35	8.9999
^^^	chr10:75881660-75881919(-)$1	259	48	51	8.9999
b[=	chr7:145813608-145813863(+)$1	255	1	4	8.9999
:::	chr7:6513713-6513933(-)$1	220	0	3	8.9999
qqq	chr12:6857391-6857650(-)$1	259	40	43	8.9999
DDD	chr5:43290952-43291214(-)$1	262	175	178	8.9999
>>>	chr7:108213716-108213996(+)$1	280	103	106	8.9999
[dd	chr5:179156916-179157130(+)$1	214	46	49	8.9999
:ee	chr12:56366290-56366545(+)$1	255	62	65	8.9999
III	chr7:6200235-6200495(+)$1	260	17	20	8.9999
fff	chr8:59495180-59495437(+)$1	257	112	115	8.9999
:::	chr4:89629016-89629271(+)$1	255	9	12	8.9999
bb:	chr18:13726672-13726936(+)$1	264	25	28	8.9999
:::	chr1:202696544-202696802(-)$1	258	15	18	8.9999
ggg	chr1:45468656-45468897(-)$1	241	43	46	8.9999
::e	chr5:96371085-96371314(+)$1	229	166	169	8.9999
eee	chr6:32136038-32136252(-)$1	214	70	73	8.9999
ccc	chr21:34915393-34915643(+)$1	250	54	57	8.9999
cc3	chr1:224577125-224577337(-)$1	212	29	32	8.9999
hhe	chr11:108344715-108344966(-)$1	251	105	108	8.9999
:::	chr17:55757046-55757305(+)$1	259	108	111	8.9999
:::	chr17:30696723-30696989(+)$1	266	6	9	8.9999
ccc	chrX:154506823-154507086(-)$1	263	0	3	8.9999
OOJ	chr19:6441058-6441310(-)$1	252	12	15	8.9999
lll	chr4:183811170-183811456(-)$1	286	60	63	8.9999
qqb	chrX:23803960-23804230(+)$1	270	37	40	8.9999
cca	chr2:232574753-232574995(+)$1	242	5	8	8.9999
::F	chr12:49330390-49330673(-)$1	283	18	21	8.9999
f:C	chr22:41855764-41856012(-)$1	248	19	22	8.9999
:::	chr4:140098104-140098358(-)$1	254	96	99	8.9999
h[c	chr7:30407204-30407456(+)$1	252	105	108	8.9999
:::	chr10:88194970-88195239(-)$1	269	6	9	8.9999
hhh	chr2:20232460-20232753(-)$1	293	87	90	8.9999
c]b	chr6:30881735-30881977(+)$1	242	19	22	8.9999
^^^	chr17:73316008-73316270(-)$1	262	60	63	8.9999

#DB
...	chr1:1190080-1190354(-)$1	1	27	30	8.9999
((.	chr7:27565034-27565297(-)$1	1	12	15	8.9999
)).	chr18:12725448-12725724(+)$1	1	63	66	8.9999
...	chr8:74463815-74464084(-)$1	1	61	64	8.9999
(..	chr7:108214541-108214889(+)$1	1	42	45	8.9999
((.	chr12:110784235-110784517(+)$1	1	50	53	8.9999
.))	chr17:76792230-76792479(-)$1	1	23	26	8.9999
..)	chr19:16212286-16212502(+)$1	1	49	52	8.9999
)..	chr6:30692325-30692559(+)$1	1	34	37	8.9999
((.	chr12:53805602-53805877(+)$1	1	13	16	8.9999
)).	chr1:161928622-161928876(+)$1	1	64	67	8.9999
(((	chr6:155154657-155154899(+)$1	1	158	161	8.9999
((.	chr15:52358295-52358534(+)$1	1	3	6	8.9999
...	chr3:88107864-88108081(-)$1	1	18	21	8.9999
...	chr10:60154863-60155119(+)$1	1	203	206	8.9999
)..	chr16:69362351-69362600(-)$1	1	24	27	8.9999
...	chr11:33162987-33163281(-)$1	1	25	28	8.9999
((.	chr10:98723635-98724029(+)$1	1	188	191	8.9999
(((	chr3:113530577-113530811(+)$1	1	114	117	8.9999
((.	chr18:56996849-56997099(-)$1	1	59	62	8.9999
...	chr14:39501369-39501646(-)$1	1	18	21	8.9999
(((	chr12:53873365-53873578(+)$1	1	28	31	8.9999
...	chr2:48132245-48132489(-)$1	1	57	60	8.9999
((.	chr1:110135745-110136013(+)$1	1	29	32	8.9999
((.	chr4:57327157-57327415(+)$1	1	29	32	8.9999
..)	chr14:75548806-75549085(-)$1	1	63	66	8.9999
.))	chr11:118472111-118472355(+)$1	1	152	155	8.9999
(((	chr6:105725680-105725950(-)$1	1	18	21	8.9999
...	chr11:118952507-118952758(+)$1	1	7	10	8.9999
)))	chr1:114519780-114520031(+)$1	1	66	69	8.9999
...	chr17:7757307-7757531(+)$1	1	99	102	8.9999
.((	chr10:72643271-72643525(-)$1	1	5	8	8.9999
.((	chr12:124081494-124081774(+)$1	1	0	3	8.9999
...	chr1:45976777-45977019(-)$1	1	4	7	8.9999
..)	chr12:67707576-67707816(+)$1	1	113	116	8.9999
)))	chr22:38686798-38687022(-)$1	1	43	46	8.9999
(((	chr19:1478874-1479150(-)$1	1	133	136	8.9999
...	chr1:115260213-115260422(-)$1	1	64	67	8.9999
..(	chr1:205056764-205057048(-)$1	1	1	4	8.9999
...	chr15:66180230-66180445(+)$1	1	66	69	8.9999
.))	chr6:31797759-31798002(+)$1	1	117	120	8.9999
(((	chr16:18802930-18803160(-)$1	1	44	47	8.9999
(..	chr7:116146136-116146379(+)$1	1	123	126	8.9999
(((	chr8:98863692-98863926(+)$1	1	215	218	8.9999
((.	chr3:5026462-5026707(+)$1	1	3	6	8.9999
(((	chr2:160624630-160624884(+)$1	1	20	23	8.9999
(..	chr6:160526429-160526689(+)$1	1	15	18	8.9999
.))	chr1:9989164-9989432(-)$1	1	147	150	8.9999
...	chr8:131064636-131064959(-)$1	1	44	47	8.9999
)..	chr20:417826-418069(-)$1	1	97	100	8.9999
(((	chr1:32636756-32636986(+)$1	1	111	114	8.9999
(..	chr5:108670937-108671193(-)$1	1	55	58	8.9999
(((	chr2:152659281-152659578(-)$1	1	31	34	8.9999
...	chr20:34292171-34292419(-)$1	1	1	4	8.9999
)))	chr17:79476963-79477200(-)$1	1	212	215	8.9999
)))	chr11:34121008-34121248(+)$1	1	33	36	8.9999
(..	chr2:89050257-89050511(+)$1	1	102	105	8.9999
(((	chr10:3171248-3171527(+)$1	1	12	15	8.9999
...	chr2:198256844-198257107(-)$1	1	206	209	8.9999
...	chr1:54497383-54497630(-)$1	1	70	73	8.9999
...	chr4:77996903-77997138(-)$1	1	1	4	8.9999
(((	chr11:59342491-59342786(-)$1	1	32	35	8.9999
...	chr10:75881660-75881919(-)$1	1	48	51	8.9999
(.(	chr7:145813608-145813863(+)$1	1	1	4	8.9999
...	chr7:6513713-6513933(-)$1	1	0	3	8.9999
...	chr12:6857391-6857650(-)$1	1	40	43	8.9999
)))	chr5:43290952-43291214(-)$1	1	175	178	8.9999
...	chr7:108213716-108213996(+)$1	1	103	106	8.9999
.((	chr5:179156916-179157130(+)$1	1	46	49	8.9999
.((	chr12:56366290-56366545(+)$1	1	62	65	8.9999
(((	chr7:6200235-6200495(+)$1	1	17	20	8.9999
)))	chr8:59495180-59495437(+)$1	1	112	115	8.9999
...	chr4:89629016-89629271(+)$1	1	9	12	8.9999
)).	chr18:13726672-13726936(+)$1	1	25	28	8.9999
...	chr1:202696544-202696802(-)$1	1	15	18	8.9999
)))	chr1:45468656-45468897(-)$1	1	43	46	8.9999
..(	chr5:96371085-96371314(+)$1	1	166	169	8.9999
)))	chr6:32136038-32136252(-)$1	1	70	73	8.9999
(((	chr21:34915393-34915643(+)$1	1	54	57	8.9999
)).	chr1:224577125-224577337(-)$1	1	29	32	8.9999
))(	chr11:108344715-108344966(-)$1	1	105	108	8.9999
...	chr17:55757046-55757305(+)$1	1	108	111	8.9999
...	chr17:30696723-30696989(+)$1	1	6	9	8.9999
(((	chrX:154506823-154507086(-)$1	1	0	3	8.9999
..(	chr19:6441058-6441310(-)$1	1	12	15	8.9999
...	chr4:183811170-183811456(-)$1	1	60	63	8.9999
..)	chrX:23803960-23804230(+)$1	1	37	40	8.9999
(((	chr2:232574753-232574995(+)$1	1	5	8	8.9999
..(	chr12:49330390-49330673(-)$1	1	18	21	8.9999
).(	chr22:41855764-41856012(-)$1	1	19	22	8.9999
...	chr4:140098104-140098358(-)$1	1	96	99	8.9999
(.(	chr7:30407204-30407456(+)$1	1	105	108	8.9999
...	chr10:88194970-88195239(-)$1	1	6	9	8.9999
)))	chr2:20232460-20232753(-)$1	1	87	90	8.9999
).)	chr6:30881735-30881977(+)$1	1	19	22	8.9999
...	chr17:73316008-73316270(-)$1	1	60	63	8.9999

#PSSM
U : 0.96	u : 0.03	
C : 0.96	c : 0.03	
C : 0.96	c : 0.03	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_UTR_m2_run2.nuc.txt

#NT
UUCU	chr4:186598538-186598812(-)$1	274	208	212	12.0000
UUCU	chr17:29701694-29701972(+)$1	278	99	103	12.0000
uucu	chr1:28826199-28826457(+)$1	258	52	56	12.0000
uucu	chr8:144916086-144916387(-)$1	301	177	181	12.0000
UUCU	chr2:242291623-242291838(+)$1	215	42	46	12.0000
UUCU	chr3:56654611-56654859(-)$1	248	218	222	12.0000
UUCU	chr2:135816327-135816580(+)$1	253	56	60	12.0000
UUCU	chr9:95475704-95475956(-)$1	252	25	29	12.0000
UUCU	chr3:48014352-48014715(-)$1	363	86	90	12.0000
UUCU	chr9:98212281-98212561(-)$1	280	98	102	12.0000
UUCU	chr14:31086938-31087190(+)$1	252	237	241	12.0000
UUCU	chr17:29112800-29113087(+)$1	287	36	40	12.0000
UUCU	chr1:28564447-28564719(+)$1	272	84	88	12.0000
UUCU	chr16:20745560-20745836(+)$1	276	164	168	12.0000
UUCU	chr7:131175885-131176164(+)$1	279	40	44	12.0000
UUCU	chrX:131622797-131623085(-)$1	288	102	106	12.0000
UUCU	chr17:4850152-4850409(-)$1	257	81	85	12.0000
UUCU	chr3:176741675-176741922(-)$1	247	84	88	12.0000
UUCU	chr4:79464896-79465114(+)$1	218	55	59	12.0000
UUCU	chr6:52269527-52269788(+)$1	261	77	81	12.0000
UUCU	chr12:98931297-98931549(+)$1	252	169	173	12.0000
UUCU	chr14:68114295-68114581(-)$1	286	37	41	12.0000
UUCU	chr18:214172-214477(+)$1	305	91	95	12.0000
UUCU	chr15:90617661-90617938(+)$1	277	45	49	12.0000
UUCU	chr14:69846772-69847037(-)$1	265	28	32	12.0000
uucu	chr12:11090193-11090472(-)$1	279	146	150	12.0000
UUCU	chr2:20111165-20111430(-)$1	265	74	78	12.0000
UUCU	chr5:34813513-34813803(+)$1	290	79	83	12.0000
UUCu	chrX:108926787-108927036(-)$1	249	66	70	12.0000
UUCU	chr2:153499934-153500152(+)$1	218	51	55	12.0000
UUCU	chr15:63361885-63362262(+)$1	377	98	102	12.0000
UUCU	chr22:29453158-29453500(+)$1	342	30	34	12.0000
UUCU	chr15:50895989-50896296(-)$1	307	66	70	12.0000
UUCU	chr5:79946586-79946801(-)$1	215	111	115	12.0000
UUCU	chr20:48520027-48520313(-)$1	286	34	38	12.0000
UUCU	chr17:57777917-57778199(-)$1	282	72	76	12.0000
UUCU	chr16:24801228-24801483(+)$1	255	246	250	12.0000
UUCU	chr16:69737665-69737887(+)$1	222	40	44	12.0000
UUCU	chr6:11198977-11199269(-)$1	292	68	72	12.0000
UUCU	chr6:128327001-128327344(-)$1	343	61	65	12.0000
UUCU	chr5:38886389-38886690(+)$1	301	49	53	12.0000
UUCU	chr11:118267372-118267619(+)$1	247	61	65	12.0000
UUCU	chr1:241793622-241793951(-)$1	329	93	97	12.0000
UUCU	chr16:28978068-28978386(+)$1	318	95	99	12.0000
uucu	chr14:31086894-31087111(+)$1	217	9	13	12.0000
UUCU	chr11:57583058-57583315(+)$1	257	18	22	12.0000
UUCU	chr6:30611009-30611249(+)$1	240	66	70	12.0000
UUCU	chr4:95211135-95211435(+)$1	300	144	148	12.0000
UUCU	chr6:163995061-163995312(+)$1	251	46	50	12.0000
UUCU	chr22:41256822-41257080(+)$1	258	48	52	12.0000
UUCU	chr7:26230872-26231111(-)$1	239	43	47	12.0000
UUCU	chr12:110937172-110937422(-)$1	250	54	58	12.0000
UUCU	chr3:56655045-56655288(-)$1	243	4	8	12.0000
UUCU	chr2:242291571-242291823(+)$1	252	26	30	12.0000
UUCU	chr17:25949089-25949339(+)$1	250	18	22	12.0000
UUCU	chr11:72549016-72549296(-)$1	280	246	250	12.0000
UUCU	chr14:21966558-21966804(-)$1	246	124	128	12.0000
UUCU	chr19:39329553-39329833(-)$1	280	4	8	12.0000
UUCU	chr15:45463613-45463937(-)$1	324	74	78	12.0000
UUCU	chr9:129599559-129599848(+)$1	289	0	4	12.0000
UUCU	chr6:52269588-52269852(+)$1	264	16	20	12.0000
UUCU	chr8:67771990-67772347(+)$1	357	25	29	12.0000
uucu	chr5:87498075-87498351(-)$1	276	69	73	12.0000
UUCU	chr14:31085697-31085966(+)$1	269	21	25	12.0000
UUCU	chr14:21966604-21966849(-)$1	245	169	173	12.0000
uucu	chr6:64388739-64388991(+)$1	252	26	30	12.0000
UUCU	chr6:163986163-163986400(+)$1	237	40	44	12.0000
UUCU	chr10:52623709-52624007(-)$1	298	79	83	12.0000
UUCU	chr8:42874490-42874729(+)$1	239	92	96	12.0000
UUCU	chrX:67755070-67755312(+)$1	242	163	167	12.0000
UUCU	chr3:176741476-176741710(-)$1	234	8	12	12.0000
UUCU	chr16:1415214-1415470(-)$1	256	3	7	12.0000
UUCU	chr15:29993020-29993274(-)$1	254	38	42	12.0000
UUCU	chr2:9628762-9629070(-)$1	308	2	6	12.0000
UUCU	chr21:40717931-40718154(-)$1	223	152	156	12.0000
UUCU	chr1:150117244-150117521(+)$1	277	84	88	12.0000
UUCU	chr3:193386369-193386688(+)$1	319	227	231	12.0000
UUCU	chr9:139098999-139099253(-)$1	254	208	212	12.0000
UUCU	chr1:162492352-162492601(+)$1	249	14	18	12.0000
UUCU	chr4:39289548-39289826(-)$1	278	3	7	12.0000
UUCU	chr14:92628946-92629241(+)$1	295	108	112	12.0000
UUCU	chr19:57323544-57323810(-)$1	266	24	28	12.0000

#otherMatches

#Struct PSSM
emmm	chr6:109003163-109003456(+)$1	293	98	102	12.0000
dddm	chr4:186598538-186598812(-)$1	274	208	212	12.0000
MMMF	chr17:29701694-29701972(+)$1	278	99	103	12.0000
MMMH	chr1:28826199-28826457(+)$1	258	52	56	12.0000
oooo	chr8:144916086-144916387(-)$1	301	177	181	12.0000
fnnn	chr2:242291623-242291838(+)$1	215	42	46	12.0000
@@@@	chr3:56654611-56654859(-)$1	248	218	222	12.0000
eebb	chr2:135816327-135816580(+)$1	253	56	60	12.0000
C{DD	chr9:95475704-95475956(-)$1	252	25	29	12.0000
nnhh	chr3:48014352-48014715(-)$1	363	86	90	12.0000
ffff	chr9:98212281-98212561(-)$1	280	98	102	12.0000
HHHH	chr14:31086938-31087190(+)$1	252	237	241	12.0000
ffff	chr17:29112800-29113087(+)$1	287	36	40	12.0000
NFFF	chr1:28564447-28564719(+)$1	272	84	88	12.0000
cppp	chr16:20745560-20745836(+)$1	276	164	168	12.0000
hhhh	chr7:131175885-131176164(+)$1	279	40	44	12.0000
d22h	chrX:131622797-131623085(-)$1	288	102	106	12.0000
eeee	chr17:4850152-4850409(-)$1	257	81	85	12.0000
7777	chr3:176741675-176741922(-)$1	247	84	88	12.0000
pppp	chr4:79464896-79465114(+)$1	218	55	59	12.0000
JJJJ	chr6:52269527-52269788(+)$1	261	77	81	12.0000
DDDD	chr12:98931297-98931549(+)$1	252	169	173	12.0000
:::D	chr14:68114295-68114581(-)$1	286	37	41	12.0000
iiii	chr18:214172-214477(+)$1	305	91	95	12.0000
eeoo	chr15:90617661-90617938(+)$1	277	45	49	12.0000
qqqf	chr14:69846772-69847037(-)$1	265	28	32	12.0000
oooo	chr12:11090193-11090472(-)$1	279	146	150	12.0000
====	chr2:20111165-20111430(-)$1	265	74	78	12.0000
meee	chr5:34813513-34813803(+)$1	290	79	83	12.0000
ggg4	chrX:108926787-108927036(-)$1	249	66	70	12.0000
oooo	chr2:153499934-153500152(+)$1	218	51	55	12.0000
::::	chr15:63361885-63362262(+)$1	377	98	102	12.0000
illl	chr22:29453158-29453500(+)$1	342	30	34	12.0000
::hh	chr15:50895989-50896296(-)$1	307	66	70	12.0000
cc[d	chr5:79946586-79946801(-)$1	215	111	115	12.0000
mmdd	chr20:48520027-48520313(-)$1	286	34	38	12.0000
FF::	chr17:57777917-57778199(-)$1	282	72	76	12.0000
ccc2	chr16:24801228-24801483(+)$1	255	246	250	12.0000
::::	chr16:69737665-69737887(+)$1	222	40	44	12.0000
::::	chr6:11198977-11199269(-)$1	292	68	72	12.0000
qqqc	chr6:128327001-128327344(-)$1	343	61	65	12.0000
::::	chr5:38886389-38886690(+)$1	301	49	53	12.0000
::::	chr11:118267372-118267619(+)$1	247	61	65	12.0000
hhhh	chr1:241793622-241793951(-)$1	329	93	97	12.0000
PPPP	chr16:28978068-28978386(+)$1	318	95	99	12.0000
::::	chr14:31086894-31087111(+)$1	217	9	13	12.0000
CCCL	chr11:57583058-57583315(+)$1	257	18	22	12.0000
$$$$	chr6:30611009-30611249(+)$1	240	66	70	12.0000
dd::	chr4:95211135-95211435(+)$1	300	144	148	12.0000
33cc	chr6:163995061-163995312(+)$1	251	46	50	12.0000
::::	chr22:41256822-41257080(+)$1	258	48	52	12.0000
ffff	chr7:26230872-26231111(-)$1	239	43	47	12.0000
^^^^	chr12:110937172-110937422(-)$1	250	54	58	12.0000
::::	chr3:56655045-56655288(-)$1	243	4	8	12.0000
ccc2	chr2:242291571-242291823(+)$1	252	26	30	12.0000
::::	chr17:25949089-25949339(+)$1	250	18	22	12.0000
pppp	chr11:72549016-72549296(-)$1	280	246	250	12.0000
====	chr14:21966558-21966804(-)$1	246	124	128	12.0000
iiii	chr19:39329553-39329833(-)$1	280	4	8	12.0000
HHHH	chr15:45463613-45463937(-)$1	324	74	78	12.0000
::::	chr9:129599559-129599848(+)$1	289	0	4	12.0000
::::	chr6:52269588-52269852(+)$1	264	16	20	12.0000
:::h	chr8:67771990-67772347(+)$1	357	25	29	12.0000
]===	chr5:87498075-87498351(-)$1	276	69	73	12.0000
ddd$	chr14:31085697-31085966(+)$1	269	21	25	12.0000
====	chr14:21966604-21966849(-)$1	245	169	173	12.0000
eee]	chr6:64388739-64388991(+)$1	252	26	30	12.0000
ffff	chr6:163986163-163986400(+)$1	237	40	44	12.0000
::::	chr10:52623709-52624007(-)$1	298	79	83	12.0000
rrrr	chr8:42874490-42874729(+)$1	239	92	96	12.0000
=:ee	chrX:67755070-67755312(+)$1	242	163	167	12.0000
ffff	chr3:176741476-176741710(-)$1	234	8	12	12.0000
FFFF	chr16:1415214-1415470(-)$1	256	3	7	12.0000
OCCC	chr15:29993020-29993274(-)$1	254	38	42	12.0000
::::	chr2:9628762-9629070(-)$1	308	2	6	12.0000
))))	chr21:40717931-40718154(-)$1	223	152	156	12.0000
>>>>	chr1:150117244-150117521(+)$1	277	84	88	12.0000
DDZZ	chr3:193386369-193386688(+)$1	319	227	231	12.0000
????	chr9:139098999-139099253(-)$1	254	208	212	12.0000
:CCC	chr1:162492352-162492601(+)$1	249	14	18	12.0000
::::	chr4:39289548-39289826(-)$1	278	3	7	12.0000
ddd]	chr14:92628946-92629241(+)$1	295	108	112	12.0000
::::	chr19:57323544-57323810(-)$1	266	24	28	12.0000

#DB
(...	chr6:109003163-109003456(+)$1	1	98	102	12.0000
(((.	chr4:186598538-186598812(-)$1	1	208	212	12.0000
...(	chr17:29701694-29701972(+)$1	1	99	103	12.0000
...(	chr1:28826199-28826457(+)$1	1	52	56	12.0000
....	chr8:144916086-144916387(-)$1	1	177	181	12.0000
(...	chr2:242291623-242291838(+)$1	1	42	46	12.0000
....	chr3:56654611-56654859(-)$1	1	218	222	12.0000
((((	chr2:135816327-135816580(+)$1	1	56	60	12.0000
(.((	chr9:95475704-95475956(-)$1	1	25	29	12.0000
..))	chr3:48014352-48014715(-)$1	1	86	90	12.0000
((((	chr9:98212281-98212561(-)$1	1	98	102	12.0000
))))	chr14:31086938-31087190(+)$1	1	237	241	12.0000
))))	chr17:29112800-29113087(+)$1	1	36	40	12.0000
.(((	chr1:28564447-28564719(+)$1	1	84	88	12.0000
(...	chr16:20745560-20745836(+)$1	1	164	168	12.0000
((((	chr7:131175885-131176164(+)$1	1	40	44	12.0000
)..)	chrX:131622797-131623085(-)$1	1	102	106	12.0000
((((	chr17:4850152-4850409(-)$1	1	81	85	12.0000
....	chr3:176741675-176741922(-)$1	1	84	88	12.0000
....	chr4:79464896-79465114(+)$1	1	55	59	12.0000
((((	chr6:52269527-52269788(+)$1	1	77	81	12.0000
))))	chr12:98931297-98931549(+)$1	1	169	173	12.0000
...(	chr14:68114295-68114581(-)$1	1	37	41	12.0000
((((	chr18:214172-214477(+)$1	1	91	95	12.0000
((..	chr15:90617661-90617938(+)$1	1	45	49	12.0000
...)	chr14:69846772-69847037(-)$1	1	28	32	12.0000
....	chr12:11090193-11090472(-)$1	1	146	150	12.0000
((((	chr2:20111165-20111430(-)$1	1	74	78	12.0000
.)))	chr5:34813513-34813803(+)$1	1	79	83	12.0000
))).	chrX:108926787-108927036(-)$1	1	66	70	12.0000
....	chr2:153499934-153500152(+)$1	1	51	55	12.0000
....	chr15:63361885-63362262(+)$1	1	98	102	12.0000
(...	chr22:29453158-29453500(+)$1	1	30	34	12.0000
..((	chr15:50895989-50896296(-)$1	1	66	70	12.0000
((.(	chr5:79946586-79946801(-)$1	1	111	115	12.0000
..))	chr20:48520027-48520313(-)$1	1	34	38	12.0000
((..	chr17:57777917-57778199(-)$1	1	72	76	12.0000
))).	chr16:24801228-24801483(+)$1	1	246	250	12.0000
....	chr16:69737665-69737887(+)$1	1	40	44	12.0000
....	chr6:11198977-11199269(-)$1	1	68	72	12.0000
...)	chr6:128327001-128327344(-)$1	1	61	65	12.0000
....	chr5:38886389-38886690(+)$1	1	49	53	12.0000
....	chr11:118267372-118267619(+)$1	1	61	65	12.0000
))))	chr1:241793622-241793951(-)$1	1	93	97	12.0000
....	chr16:28978068-28978386(+)$1	1	95	99	12.0000
....	chr14:31086894-31087111(+)$1	1	9	13	12.0000
(((.	chr11:57583058-57583315(+)$1	1	18	22	12.0000
....	chr6:30611009-30611249(+)$1	1	66	70	12.0000
))..	chr4:95211135-95211435(+)$1	1	144	148	12.0000
..))	chr6:163995061-163995312(+)$1	1	46	50	12.0000
....	chr22:41256822-41257080(+)$1	1	48	52	12.0000
))))	chr7:26230872-26231111(-)$1	1	43	47	12.0000
....	chr12:110937172-110937422(-)$1	1	54	58	12.0000
....	chr3:56655045-56655288(-)$1	1	4	8	12.0000
))).	chr2:242291571-242291823(+)$1	1	26	30	12.0000
....	chr17:25949089-25949339(+)$1	1	18	22	12.0000
....	chr11:72549016-72549296(-)$1	1	246	250	12.0000
((((	chr14:21966558-21966804(-)$1	1	124	128	12.0000
((((	chr19:39329553-39329833(-)$1	1	4	8	12.0000
((((	chr15:45463613-45463937(-)$1	1	74	78	12.0000
....	chr9:129599559-129599848(+)$1	1	0	4	12.0000
....	chr6:52269588-52269852(+)$1	1	16	20	12.0000
...(	chr8:67771990-67772347(+)$1	1	25	29	12.0000
.)))	chr5:87498075-87498351(-)$1	1	69	73	12.0000
(((.	chr14:31085697-31085966(+)$1	1	21	25	12.0000
((((	chr14:21966604-21966849(-)$1	1	169	173	12.0000
))).	chr6:64388739-64388991(+)$1	1	26	30	12.0000
))))	chr6:163986163-163986400(+)$1	1	40	44	12.0000
....	chr10:52623709-52624007(-)$1	1	79	83	12.0000
....	chr8:42874490-42874729(+)$1	1	92	96	12.0000
).((	chrX:67755070-67755312(+)$1	1	163	167	12.0000
((((	chr3:176741476-176741710(-)$1	1	8	12	12.0000
((((	chr16:1415214-1415470(-)$1	1	3	7	12.0000
.(((	chr15:29993020-29993274(-)$1	1	38	42	12.0000
....	chr2:9628762-9629070(-)$1	1	2	6	12.0000
....	chr21:40717931-40718154(-)$1	1	152	156	12.0000
....	chr1:150117244-150117521(+)$1	1	84	88	12.0000
))..	chr3:193386369-193386688(+)$1	1	227	231	12.0000
....	chr9:139098999-139099253(-)$1	1	208	212	12.0000
.(((	chr1:162492352-162492601(+)$1	1	14	18	12.0000
....	chr4:39289548-39289826(-)$1	1	3	7	12.0000
))).	chr14:92628946-92629241(+)$1	1	108	112	12.0000
....	chr19:57323544-57323810(-)$1	1	24	28	12.0000

#PSSM
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
C : 0.92	c : 0.07	
U : 0.91	u : 0.08	

#score	996.0000000000002
#seq	83
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_transcript_m2_run2.nuc.txt

#NT
ACUAAC	chr2:122202380-122202696(-)$1	316	109	115	17.9999
acuaac	chr16:66839100-66839343(-)$1	243	121	127	17.9999
acuaac	chr12:23738482-23738707(-)$1	225	112	118	17.9999
acuaac	chr2:170877908-170878163(+)$1	255	164	170	17.9999
acuaac	chr10:74491685-74491974(+)$1	289	136	142	17.9999
ACUAAC	chr2:65469240-65469521(+)$1	281	178	184	17.9999
acuaac	chr17:65183500-65183817(-)$1	317	155	161	17.9999
ACUAAC	chr4:22386590-22386842(-)$1	252	102	108	17.9999
ACUAAC	chr13:42386691-42386955(-)$1	264	136	142	17.9999
acuaac	chr14:36234256-36234539(-)$1	283	107	113	17.9999
ACUAAC	chr3:105151420-105151679(+)$1	259	113	119	17.9999
acuaac	chr3:133947415-133947696(-)$1	281	114	120	17.9999
ACUAAC	chr11:67884115-67884378(-)$1	263	121	127	17.9999
acuaac	chr2:136247940-136248190(-)$1	250	106	112	17.9999
acuaac	chr2:169463654-169463915(+)$1	261	81	87	17.9999
ACUAAC	chr17:55758750-55759055(+)$1	305	101	107	17.9999
ACUAAC	chr7:116515301-116515572(+)$1	271	116	122	17.9999
acuaac	chr12:120598528-120598781(-)$1	253	94	100	17.9999
ACUAAC	chr13:52519787-52520070(-)$1	283	118	124	17.9999
ACUAAC	chr19:11339681-11339991(-)$1	310	176	182	17.9999
acuaac	chr20:1436039-1436340(-)$1	301	104	110	17.9999
ACUAAC	chr4:144269192-144269493(+)$1	301	106	112	17.9999
ACUAAC	chr11:72651195-72651470(-)$1	275	0	6	17.9999
ACUAAC	chr7:133421679-133421936(+)$1	257	95	101	17.9999
ACUAAC	chr2:112761718-112762017(+)$1	299	52	58	17.9999
ACUAAC	chr5:59173829-59174104(-)$1	275	128	134	17.9999
aCUAAC	chr2:236736976-236737265(+)$1	289	145	151	17.9999
acuaac	chr1:205416278-205416566(-)$1	288	137	143	17.9999
ACUAAC	chr5:112326554-112326799(+)$1	245	114	120	17.9999
ACUAAC	chr13:98899578-98899893(+)$1	315	115	121	17.9999
acuaac	chr6:13297832-13298080(-)$1	248	84	90	17.9999
ACUAAC	chr12:107275094-107275411(+)$1	317	81	87	17.9999
ACUAAC	chr6:52925721-52926000(-)$1	279	107	113	17.9999
ACUAAC	chr18:42334916-42335191(+)$1	275	100	106	17.9999
ACUAAC	chr3:130722121-130722389(+)$1	268	143	149	17.9999
acuaac	chr8:30290925-30291203(+)$1	278	96	102	17.9999
ACUAAC	chr12:31731958-31732194(-)$1	236	66	72	17.9999
acuaac	chr3:11636035-11636306(-)$1	271	111	117	17.9999
ACUAAC	chr3:47641800-47642085(-)$1	285	118	124	17.9999
acuaac	chr8:97563496-97563758(+)$1	262	108	114	17.9999
ACUAAC	chr4:186095451-186095741(-)$1	290	114	120	17.9999
ACUAAC	chr7:29601211-29601465(-)$1	254	125	131	17.9999
acuaac	chr3:185448609-185448884(-)$1	275	119	125	17.9999
ACUAAC	chr12:103235250-103235504(-)$1	254	116	122	17.9999
ACUAAC	chr7:102776211-102776527(-)$1	316	108	114	17.9999
ACUAAC	chr16:24778948-24779275(+)$1	327	102	108	17.9999
ACUAAC	chr2:32425822-32426099(+)$1	277	183	189	17.9999
ACUAAC	chr17:65169219-65169453(-)$1	234	87	93	17.9999
acuaac	chr1:87543891-87544148(+)$1	257	126	132	17.9999
acuaac	chr13:51140759-51141050(+)$1	291	112	118	17.9999
ACUAAC	chr4:139114960-139115265(-)$1	305	127	133	17.9999
ACUAAC	chr1:31737467-31737747(-)$1	280	106	112	17.9999
ACUAAC	chr1:61607214-61607449(+)$1	235	45	51	17.9999
ACUAAC	chr2:149541630-149541910(+)$1	280	101	107	17.9999
ACUAAC	chr16:71888352-71888632(+)$1	280	141	147	17.9999
acuaac	chr13:51249578-51249879(+)$1	301	120	126	17.9999
ACUAAC	chr11:34112233-34112564(+)$1	331	4	10	17.9999
ACUAAC	chr13:113499178-113499390(+)$1	212	64	70	17.9999
ACUAAC	chr5:126160172-126160470(+)$1	298	103	109	17.9999
acuaac	chr17:59861921-59862226(-)$1	305	159	165	17.9999
ACUAAC	chr9:129599559-129599848(+)$1	289	91	97	17.9999
ACUAAC	chr1:245013448-245013701(-)$1	253	128	134	17.9999
acuaac	chr11:70400518-70400789(-)$1	271	106	112	17.9999
acuaac	chr17:34885531-34885814(-)$1	283	155	161	17.9999

#otherMatches

#Struct PSSM
::::::	chr18:46912916-46913199(-)$1	283	114	120	17.9999
=:dddd	chr2:122202380-122202696(-)$1	316	109	115	17.9999
^^^^^^	chr16:66839100-66839343(-)$1	243	121	127	17.9999
>>>>>>	chr12:23738482-23738707(-)$1	225	112	118	17.9999
:fffff	chr2:170877908-170878163(+)$1	255	164	170	17.9999
eeeeee	chr10:74491685-74491974(+)$1	289	136	142	17.9999
ssssss	chr2:65469240-65469521(+)$1	281	178	184	17.9999
!ccc%%	chr17:65183500-65183817(-)$1	317	155	161	17.9999
ccc[ee	chr4:22386590-22386842(-)$1	252	102	108	17.9999
mccc]d	chr13:42386691-42386955(-)$1	264	136	142	17.9999
:bb[cc	chr14:36234256-36234539(-)$1	283	107	113	17.9999
::::::	chr3:105151420-105151679(+)$1	259	113	119	17.9999
ddd]bb	chr3:133947415-133947696(-)$1	281	114	120	17.9999
::::::	chr11:67884115-67884378(-)$1	263	121	127	17.9999
eeeeed	chr2:136247940-136248190(-)$1	250	106	112	17.9999
fffffd	chr2:169463654-169463915(+)$1	261	81	87	17.9999
fffnnn	chr17:55758750-55759055(+)$1	305	101	107	17.9999
oooodd	chr7:116515301-116515572(+)$1	271	116	122	17.9999
qqqddd	chr12:120598528-120598781(-)$1	253	94	100	17.9999
ggg:::	chr13:52519787-52520070(-)$1	283	118	124	17.9999
^^^^^^	chr19:11339681-11339991(-)$1	310	176	182	17.9999
]bb666	chr20:1436039-1436340(-)$1	301	104	110	17.9999
GGGGGG	chr4:144269192-144269493(+)$1	301	106	112	17.9999
::CCC{	chr11:72651195-72651470(-)$1	275	0	6	17.9999
::::EE	chr7:133421679-133421936(+)$1	257	95	101	17.9999
^^^^^^	chr2:112761718-112762017(+)$1	299	52	58	17.9999
rrrrrr	chr5:59173829-59174104(-)$1	275	128	134	17.9999
@@@@@@	chr2:236736976-236737265(+)$1	289	145	151	17.9999
:::::D	chr1:205416278-205416566(-)$1	288	137	143	17.9999
::::::	chr5:112326554-112326799(+)$1	245	114	120	17.9999
e:::::	chr13:98899578-98899893(+)$1	315	115	121	17.9999
ddd]dd	chr6:13297832-13298080(-)$1	248	84	90	17.9999
baqqqq	chr12:107275094-107275411(+)$1	317	81	87	17.9999
33hhhh	chr6:52925721-52926000(-)$1	279	107	113	17.9999
WWWWWW	chr18:42334916-42335191(+)$1	275	100	106	17.9999
::::::	chr3:130722121-130722389(+)$1	268	143	149	17.9999
^^^^^^	chr8:30290925-30291203(+)$1	278	96	102	17.9999
++++++	chr12:31731958-31732194(-)$1	236	66	72	17.9999
eee[cc	chr3:11636035-11636306(-)$1	271	111	117	17.9999
uuuuuu	chr3:47641800-47642085(-)$1	285	118	124	17.9999
::::::	chr8:97563496-97563758(+)$1	262	108	114	17.9999
^^^^^^	chr4:186095451-186095741(-)$1	290	114	120	17.9999
vvvvvv	chr7:29601211-29601465(-)$1	254	125	131	17.9999
^^^^^^	chr3:185448609-185448884(-)$1	275	119	125	17.9999
::::::	chr12:103235250-103235504(-)$1	254	116	122	17.9999
ucccbb	chr7:102776211-102776527(-)$1	316	108	114	17.9999
tttttt	chr16:24778948-24779275(+)$1	327	102	108	17.9999
::::::	chr2:32425822-32426099(+)$1	277	183	189	17.9999
ddd888	chr17:65169219-65169453(-)$1	234	87	93	17.9999
::ccc!	chr1:87543891-87544148(+)$1	257	126	132	17.9999
dd:ddd	chr13:51140759-51141050(+)$1	291	112	118	17.9999
::::::	chr4:139114960-139115265(-)$1	305	127	133	17.9999
::::::	chr1:31737467-31737747(-)$1	280	106	112	17.9999
88888g	chr1:61607214-61607449(+)$1	235	45	51	17.9999
777777	chr2:149541630-149541910(+)$1	280	101	107	17.9999
ff22dd	chr16:71888352-71888632(+)$1	280	141	147	17.9999
dddd::	chr13:51249578-51249879(+)$1	301	120	126	17.9999
dddd[b	chr11:34112233-34112564(+)$1	331	4	10	17.9999
nccc44	chr13:113499178-113499390(+)$1	212	64	70	17.9999
qqqqqc	chr5:126160172-126160470(+)$1	298	103	109	17.9999
::::::	chr17:59861921-59862226(-)$1	305	159	165	17.9999
dddd:G	chr9:129599559-129599848(+)$1	289	91	97	17.9999
3eeeee	chr1:245013448-245013701(-)$1	253	128	134	17.9999
EEE:ii	chr11:70400518-70400789(-)$1	271	106	112	17.9999
2ccc]c	chr17:34885531-34885814(-)$1	283	155	161	17.9999

#DB
......	chr18:46912916-46913199(-)$1	1	114	120	17.9999
).((((	chr2:122202380-122202696(-)$1	1	109	115	17.9999
......	chr16:66839100-66839343(-)$1	1	121	127	17.9999
......	chr12:23738482-23738707(-)$1	1	112	118	17.9999
.(((((	chr2:170877908-170878163(+)$1	1	164	170	17.9999
)))(((	chr10:74491685-74491974(+)$1	1	136	142	17.9999
......	chr2:65469240-65469521(+)$1	1	178	184	17.9999
.(((..	chr17:65183500-65183817(-)$1	1	155	161	17.9999
(((.((	chr4:22386590-22386842(-)$1	1	102	108	17.9999
.))).)	chr13:42386691-42386955(-)$1	1	136	142	17.9999
.((.((	chr14:36234256-36234539(-)$1	1	107	113	17.9999
......	chr3:105151420-105151679(+)$1	1	113	119	17.9999
))).))	chr3:133947415-133947696(-)$1	1	114	120	17.9999
......	chr11:67884115-67884378(-)$1	1	121	127	17.9999
((((((	chr2:136247940-136248190(-)$1	1	106	112	17.9999
)))))(	chr2:169463654-169463915(+)$1	1	81	87	17.9999
(((...	chr17:55758750-55759055(+)$1	1	101	107	17.9999
....))	chr7:116515301-116515572(+)$1	1	116	122	17.9999
...)))	chr12:120598528-120598781(-)$1	1	94	100	17.9999
)))...	chr13:52519787-52520070(-)$1	1	118	124	17.9999
......	chr19:11339681-11339991(-)$1	1	176	182	17.9999
.))...	chr20:1436039-1436340(-)$1	1	104	110	17.9999
))))))	chr4:144269192-144269493(+)$1	1	106	112	17.9999
..(((.	chr11:72651195-72651470(-)$1	1	0	6	17.9999
....((	chr7:133421679-133421936(+)$1	1	95	101	17.9999
......	chr2:112761718-112762017(+)$1	1	52	58	17.9999
......	chr5:59173829-59174104(-)$1	1	128	134	17.9999
......	chr2:236736976-236737265(+)$1	1	145	151	17.9999
.....(	chr1:205416278-205416566(-)$1	1	137	143	17.9999
......	chr5:112326554-112326799(+)$1	1	114	120	17.9999
).....	chr13:98899578-98899893(+)$1	1	115	121	17.9999
))).))	chr6:13297832-13298080(-)$1	1	84	90	17.9999
((....	chr12:107275094-107275411(+)$1	1	81	87	17.9999
..))))	chr6:52925721-52926000(-)$1	1	107	113	17.9999
......	chr18:42334916-42335191(+)$1	1	100	106	17.9999
......	chr3:130722121-130722389(+)$1	1	143	149	17.9999
......	chr8:30290925-30291203(+)$1	1	96	102	17.9999
......	chr12:31731958-31732194(-)$1	1	66	72	17.9999
(((.((	chr3:11636035-11636306(-)$1	1	111	117	17.9999
......	chr3:47641800-47642085(-)$1	1	118	124	17.9999
......	chr8:97563496-97563758(+)$1	1	108	114	17.9999
......	chr4:186095451-186095741(-)$1	1	114	120	17.9999
......	chr7:29601211-29601465(-)$1	1	125	131	17.9999
......	chr3:185448609-185448884(-)$1	1	119	125	17.9999
......	chr12:103235250-103235504(-)$1	1	116	122	17.9999
.)))))	chr7:102776211-102776527(-)$1	1	108	114	17.9999
......	chr16:24778948-24779275(+)$1	1	102	108	17.9999
......	chr2:32425822-32426099(+)$1	1	183	189	17.9999
)))...	chr17:65169219-65169453(-)$1	1	87	93	17.9999
..(((.	chr1:87543891-87544148(+)$1	1	126	132	17.9999
)).(((	chr13:51140759-51141050(+)$1	1	112	118	17.9999
......	chr4:139114960-139115265(-)$1	1	127	133	17.9999
......	chr1:31737467-31737747(-)$1	1	106	112	17.9999
.....)	chr1:61607214-61607449(+)$1	1	45	51	17.9999
......	chr2:149541630-149541910(+)$1	1	101	107	17.9999
))..))	chr16:71888352-71888632(+)$1	1	141	147	17.9999
))))..	chr13:51249578-51249879(+)$1	1	120	126	17.9999
((((.(	chr11:34112233-34112564(+)$1	1	4	10	17.9999
.)))..	chr13:113499178-113499390(+)$1	1	64	70	17.9999
.....)	chr5:126160172-126160470(+)$1	1	103	109	17.9999
......	chr17:59861921-59862226(-)$1	1	159	165	17.9999
)))).(	chr9:129599559-129599848(+)$1	1	91	97	17.9999
.)))))	chr1:245013448-245013701(-)$1	1	128	134	17.9999
(((.((	chr11:70400518-70400789(-)$1	1	106	112	17.9999
.))).)	chr17:34885531-34885814(-)$1	1	155	161	17.9999

#PSSM
A : 0.61	a : 0.38	
C : 0.63	c : 0.36	
U : 0.63	u : 0.36	
A : 0.63	a : 0.36	
A : 0.63	a : 0.36	
C : 0.63	c : 0.36	

#score	1169.9999999999998
#seq	65
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_CDS_m1_run2.nuc.txt

#NT
CAGGUGGGGGAGGG	chr19:10479005-10479316(-)$1	311	106	120	20.1451
GGGAUGUGGGGGGG	chr4:52709711-52709962(+)$1	251	81	95	20.2258
gaggaggggcuggg	chr19:49675017-49675383(+)$1	366	82	96	19.5806
GGGAAAGGGGUGGG	chr3:45730807-45731097(+)$1	290	25	39	19.4999
ggggccgggguagg	chr16:420107-420410(-)$1	303	0	14	19.6612
UGGGUGGGGGAAGG	chr19:42401289-42401573(+)$1	284	202	216	20.3870
GGGGUGGGAGAGGG	chr9:130571814-130572085(+)$1	271	103	117	24.2580
Ggggcggggcaggg	chr15:41099804-41100109(+)$1	305	95	109	21.9999
GGGGAGGGGGAGGC	chr19:3976135-3976373(-)$1	238	63	77	21.9193
GGGAGAGGGGUGGG	chr1:226032892-226033174(-)$1	282	112	126	19.1774
GGGGCCGGGGUGGG	chr12:49392909-49393185(-)$1	276	91	105	23.1290
gGGGUGUGGGGUGG	chr11:126146105-126146396(+)$1	291	104	118	20.4677
GGGGUGUGGGCGGU	chr22:20862367-20862698(+)$1	331	125	139	19.7419
GUGGUUGGGGUGGG	chr19:18653592-18653884(-)$1	292	71	85	21.3548
GGGGGAGCGGUGGG	chr16:2867255-2867547(+)$1	292	113	127	18.6129
GGGGAGGGGCCGGG	chr6:43596664-43596967(-)$1	303	31	45	21.9193
ggggugggagagga	chr7:128864763-128865080(+)$1	317	25	39	19.9838
gcggcggGGGUGGG	chr10:101379902-101380220(-)$1	318	93	107	23.2903
GGGGUGGGUGUUGG	chr7:150777590-150777876(-)$1	286	195	209	21.9999
CGGGUGGGCGGGGG	chr11:46389048-46389318(+)$1	270	80	94	20.0645
GGGGAGCGGCUGGG	chr3:122785850-122786164(+)$1	314	47	61	19.4193
GGGAGGGGGCUGGG	chr6:33382595-33382902(+)$1	307	100	114	19.3387
ggggcgggggcggg	chr16:30134284-30134613(-)$1	329	105	119	25.7096
CGGGUUGGGGCGGG	chr19:47987245-47987559(-)$1	314	98	112	20.0645
GAGGUGGAGGUGGG	chr4:110745070-110745290(+)$1	220	71	85	21.3548
gggccgggggucgg	chr8:25315615-25315945(-)$1	330	257	271	19.6612
GGGGUGGGAGCAGG	chr4:7012095-7012499(+)$1	404	58	72	20.7096
CGGGCGGGGGUUGG	chr6:32157582-32157845(-)$1	263	41	55	19.7419
GGGGAGGGGUUUGG	chr15:80215073-80215345(-)$1	272	240	254	19.5806
GAGGUGGAGGUGGG	chr4:110745025-110745270(+)$1	245	116	130	21.3548
GGGAGGGAGGUGGG	chr11:65620305-65620579(-)$1	274	92	106	19.0161
GGGCCGGGGGAGGG	chr16:69419254-69419551(-)$1	297	65	79	21.8387
AGGGUGGGAGGGGG	chr16:69165206-69165483(-)$1	277	48	62	19.9838
GGGGUGAGGGGAGG	chr1:53686048-53686348(-)$1	300	104	118	20.2258
GGGGUGGGGGUGGG	chr3:196730159-196730438(+)$1	279	231	245	29.2580
ggggggagggaggg	chr16:725953-726314(+)$1	361	75	89	21.4354
GGGUUGGAGGUGGG	chr1:213031622-213031941(+)$1	319	71	85	21.0322
gcgguggguggggg	chr22:50722302-50722601(-)$1	299	92	106	20.0645
ggggCGGGGGCCGG	chr13:115047370-115047626(+)$1	256	29	43	22.1612
GGGCUGGUGGUGGG	chr3:50273589-50273876(+)$1	287	84	98	20.9516
gggguggggagggg	chr22:50942761-50943032(-)$1	271	89	103	23.5322
GGGGUGCGGGGUGG	chr1:28240622-28240936(-)$1	314	1	15	20.3064
UGGGCGGGGGCGGG	chr5:138629685-138630019(+)$1	334	147	161	21.6774
gggguuggggaagg	chr16:67700244-67700513(-)$1	269	87	101	20.6290
gggggguggguggg	chr17:37618165-37618454(+)$1	289	87	101	23.0483
GGGGUGGGGCUGGC	chr19:58990967-58991224(-)$1	257	106	120	21.5967
aggguggggguggg	chr3:185542641-185542940(-)$1	299	57	71	25.1451
GAGGAgggggcggg	chr6:31864806-31865056(-)$1	250	10	24	21.9193
GCGGUGGGAGCGGG	chr7:65338233-65338489(+)$1	256	160	174	20.3064
GGGGUGGGGUUGGG	chr8:145693804-145694073(+)$1	269	92	106	25.1451
GGGGUGUGCGUGGG	chr1:202129627-202129908(-)$1	281	101	115	21.7580
GGGGUGGGCGAGGC	chr19:46915251-46915538(-)$1	287	128	142	20.3064
GGGAAGGGGGUCGG	chr11:61196970-61197343(-)$1	373	22	36	19.9032
UGGGAUGGGGUGGG	chr19:1017218-1017516(-)$1	298	43	57	19.3387
ggggugcgggaggc	chr9:131102849-131103156(+)$1	307	51	65	20.0645
GGGGAGGGGGAGGC	chr19:3976173-3976415(-)$1	242	105	119	21.9193
gggguggggguggg	chr15:38776585-38776890(+)$1	305	24	38	29.2580
GCGGUGGCGGCGGG	chr9:101867304-101867627(+)$1	323	166	180	19.6612
GGGGUgggcggggc	chr19:6739609-6739897(+)$1	288	27	41	20.1451
GGGGUGGGUGGGGG	chr6:33179103-33179366(+)$1	263	39	53	23.9354
ggggugggggccgg	chr2:54197719-54198016(-)$1	297	37	51	24.2580

#otherMatches

#Struct PSSM
iiiiiiiiieeeee	chr15:75651383-75651658(-)$1	275	92	106	25.4677
a]iiiiiiiiieee	chr19:10479005-10479316(-)$1	311	106	120	20.1451
fffff[a&&&&&&&	chr4:52709711-52709962(+)$1	251	81	95	20.2258
77777ccc]cccii	chr19:49675017-49675383(+)$1	366	82	96	19.5806
A::::::::FFFFF	chr3:45730807-45731097(+)$1	290	25	39	19.4999
bbggggggg[dddd	chr16:420107-420410(-)$1	303	0	14	19.6612
eeeeggggggg[cc	chr19:42401289-42401573(+)$1	284	202	216	20.3870
CCC:dddd[fffff	chr9:130571814-130572085(+)$1	271	103	117	24.2580
22a]bb]ccc====	chr15:41099804-41100109(+)$1	305	95	109	21.9999
ggggggg[eeeee[	chr19:3976135-3976373(-)$1	238	63	77	21.9193
EEE:ggggggg[bb	chr1:226032892-226033174(-)$1	282	112	126	19.1774
!eeeeedddd[a[f	chr12:49392909-49393185(-)$1	276	91	105	23.1290
ee[a[ggggggg##	chr11:126146105-126146396(+)$1	291	104	118	20.4677
gggg[bb[a[a!!a	chr22:20862367-20862698(+)$1	331	125	139	19.7419
$$$$eeeee[a[dd	chr19:18653592-18653884(-)$1	292	71	85	21.3548
cc]bb]bb:eeeee	chr16:2867255-2867547(+)$1	292	113	127	18.6129
GGGG:::hhhhhhh	chr6:43596664-43596967(-)$1	303	31	45	21.9193
EEEEE:::::::::	chr7:128864763-128865080(+)$1	317	25	39	19.9838
bb]bb]a22bb]a]	chr10:101379902-101380220(-)$1	318	93	107	23.2903
YYCCC}CCC}IIII	chr7:150777590-150777876(-)$1	286	195	209	21.9999
d[a[a[dddd[a[d	chr11:46389048-46389318(+)$1	270	80	94	20.0645
JJJJJJJJeeeee#	chr3:122785850-122786164(+)$1	314	47	61	19.4193
[bboooooobb]cc	chr6:33382595-33382902(+)$1	307	100	114	19.3387
mdddd:eeeeennn	chr16:30134284-30134613(-)$1	329	105	119	25.7096
a"""ccc[cccmmm	chr19:47987245-47987559(-)$1	314	98	112	20.0645
iiiii!!=======	chr4:110745070-110745290(+)$1	220	71	85	21.3548
[ffffff"""ccc[	chr8:25315615-25315945(-)$1	330	257	271	19.6612
FFFFFNNNNNDDDD	chr4:7012095-7012499(+)$1	404	58	72	20.7096
e!!bb[ggggggg!	chr6:32157582-32157845(-)$1	263	41	55	19.7419
:::::::::::::d	chr15:80215073-80215345(-)$1	272	240	254	19.5806
22eeeee=======	chr4:110745025-110745270(+)$1	245	116	130	21.3548
ggggg[ccc[ccc[	chr11:65620305-65620579(-)$1	274	92	106	19.0161
EEEEE{BB{CCC{F	chr16:69419254-69419551(-)$1	297	65	79	21.8387
::cccqqqqqqqqc	chr16:69165206-69165483(-)$1	277	48	62	19.9838
nnccc]bb666666	chr1:53686048-53686348(-)$1	300	104	118	20.2258
oooooohhhhhhhh	chr3:196730159-196730438(+)$1	279	231	245	29.2580
iiiii::ffffffe	chr16:725953-726314(+)$1	361	75	89	21.4354
f!!dddd[ccclll	chr1:213031622-213031941(+)$1	319	71	85	21.0322
bb[dddd[gggggg	chr22:50722302-50722601(-)$1	299	92	106	20.0645
ff[bb[a[adddd[	chr13:115047370-115047626(+)$1	256	29	43	22.1612
AKKBB{BBCCC{AM	chr3:50273589-50273876(+)$1	287	84	98	20.9516
ffffffbb"""bb"	chr22:50942761-50943032(-)$1	271	89	103	23.5322
:BB{DDDDKKDDDD	chr1:28240622-28240936(-)$1	314	1	15	20.3064
ccffffff"""bbn	chr5:138629685-138630019(+)$1	334	147	161	21.6774
ddd!!eeeee####	chr16:67700244-67700513(-)$1	269	87	101	20.6290
==========]fff	chr17:37618165-37618454(+)$1	289	87	101	23.0483
iiiiiiiiiccc[d	chr19:58990967-58991224(-)$1	257	106	120	21.5967
]=============	chr3:185542641-185542940(-)$1	299	57	71	25.1451
==========[ddd	chr6:31864806-31865056(-)$1	250	10	24	21.9193
ffeeeeeggggggg	chr7:65338233-65338489(+)$1	256	160	174	20.3064
###bbqqqqqqqqb	chr8:145693804-145694073(+)$1	269	92	106	25.1451
]a22eeeeebb[cc	chr1:202129627-202129908(-)$1	281	101	115	21.7580
JJJGGGGGGG:GGG	chr19:46915251-46915538(-)$1	287	128	142	20.3064
II:::::::cccoo	chr11:61196970-61197343(-)$1	373	22	36	19.9032
ff]a:::DDDD{A{	chr19:1017218-1017516(-)$1	298	43	57	19.3387
b22dddd]bb]a]b	chr9:131102849-131103156(+)$1	307	51	65	20.0645
ggggggg[eeeee[	chr19:3976173-3976415(-)$1	242	105	119	21.9193
::::::::ccc[ao	chr15:38776585-38776890(+)$1	305	24	38	29.2580
nnneeeee22ccc2	chr9:101867304-101867627(+)$1	323	166	180	19.6612
dddd[dddd!!eee	chr19:6739609-6739897(+)$1	288	27	41	20.1451
DDDD{BB{GGGGGG	chr6:33179103-33179366(+)$1	263	39	53	23.9354
MMMCCC{BB{DDDD	chr2:54197719-54198016(-)$1	297	37	51	24.2580

#DB
((((((((((((((	chr15:75651383-75651658(-)$1	1	92	106	25.4677
).)))))))))(((	chr19:10479005-10479316(-)$1	1	106	120	20.1451
(((((.(.......	chr4:52709711-52709962(+)$1	1	81	95	20.2258
.....))).)))((	chr19:49675017-49675383(+)$1	1	82	96	19.5806
(........(((((	chr3:45730807-45731097(+)$1	1	25	39	19.4999
(((((((((.((((	chr16:420107-420410(-)$1	1	0	14	19.6612
(((((((((((.((	chr19:42401289-42401573(+)$1	1	202	216	20.3870
(((.((((.(((((	chr9:130571814-130572085(+)$1	1	103	117	24.2580
..).)).)))))))	chr15:41099804-41100109(+)$1	1	95	109	21.9999
(((((((.(((((.	chr19:3976135-3976373(-)$1	1	63	77	21.9193
))).(((((((.((	chr1:226032892-226033174(-)$1	1	112	126	19.1774
.(((((((((.(.(	chr12:49392909-49393185(-)$1	1	91	105	23.1290
((.(.(((((((..	chr11:126146105-126146396(+)$1	1	104	118	20.4677
((((.((.(.(..(	chr22:20862367-20862698(+)$1	1	125	139	19.7419
....(((((.(.((	chr19:18653592-18653884(-)$1	1	71	85	21.3548
)).)).)).(((((	chr16:2867255-2867547(+)$1	1	113	127	18.6129
((((...(((((((	chr6:43596664-43596967(-)$1	1	31	45	21.9193
(((((.........	chr7:128864763-128865080(+)$1	1	25	39	19.9838
)).)).)..)).).	chr10:101379902-101380220(-)$1	1	93	107	23.2903
..))).))).))))	chr7:150777590-150777876(-)$1	1	195	209	21.9999
(.(.(.((((.(.(	chr11:46389048-46389318(+)$1	1	80	94	20.0645
(((((((((((((.	chr3:122785850-122786164(+)$1	1	47	61	19.4193
.((......)).))	chr6:33382595-33382902(+)$1	1	100	114	19.3387
.)))).(((((...	chr16:30134284-30134613(-)$1	1	105	119	25.7096
(...(((.(((...	chr19:47987245-47987559(-)$1	1	98	112	20.0645
(((((..(((((((	chr4:110745070-110745290(+)$1	1	71	85	21.3548
.((((((...(((.	chr8:25315615-25315945(-)$1	1	257	271	19.6612
(((((.....((((	chr4:7012095-7012499(+)$1	1	58	72	20.7096
(..((.(((((((.	chr6:32157582-32157845(-)$1	1	41	55	19.7419
.............(	chr15:80215073-80215345(-)$1	1	240	254	19.5806
..)))))(((((((	chr4:110745025-110745270(+)$1	1	116	130	21.3548
(((((.(((.(((.	chr11:65620305-65620579(-)$1	1	92	106	19.0161
(((((.((.(((.(	chr16:69419254-69419551(-)$1	1	65	79	21.8387
..(((........)	chr16:69165206-69165483(-)$1	1	48	62	19.9838
..))).))......	chr1:53686048-53686348(-)$1	1	104	118	20.2258
......))))))))	chr3:196730159-196730438(+)$1	1	231	245	29.2580
)))))..(((((((	chr16:725953-726314(+)$1	1	75	89	21.4354
(..((((.(((...	chr1:213031622-213031941(+)$1	1	71	85	21.0322
((.((((.((((((	chr22:50722302-50722601(-)$1	1	92	106	20.0645
((.((.(.(((((.	chr13:115047370-115047626(+)$1	1	29	43	22.1612
(..((.(((((.(.	chr3:50273589-50273876(+)$1	1	84	98	20.9516
((((((((...((.	chr22:50942761-50943032(-)$1	1	89	103	23.5322
.((.((((..((((	chr1:28240622-28240936(-)$1	1	1	15	20.3064
((((((((...((.	chr5:138629685-138630019(+)$1	1	147	161	21.6774
(((..(((((....	chr16:67700244-67700513(-)$1	1	87	101	20.6290
)))))))))).)))	chr17:37618165-37618454(+)$1	1	87	101	23.0483
((((((((((((.(	chr19:58990967-58991224(-)$1	1	106	120	21.5967
.)))))))))))))	chr3:185542641-185542940(-)$1	1	57	71	25.1451
((((((((((.(((	chr6:31864806-31865056(-)$1	1	10	24	21.9193
))((((((((((((	chr7:65338233-65338489(+)$1	1	160	174	20.3064
...((........)	chr8:145693804-145694073(+)$1	1	92	106	25.1451
.)..)))))((.((	chr1:202129627-202129908(-)$1	1	101	115	21.7580
)))))))))).(((	chr19:46915251-46915538(-)$1	1	128	142	20.3064
((.......(((..	chr11:61196970-61197343(-)$1	1	22	36	19.9032
)).)...((((.(.	chr19:1017218-1017516(-)$1	1	43	57	19.3387
)..)))).)).).)	chr9:131102849-131103156(+)$1	1	51	65	20.0645
(((((((.(((((.	chr19:3976173-3976415(-)$1	1	105	119	21.9193
........(((.(.	chr15:38776585-38776890(+)$1	1	24	38	29.2580
...)))))..))).	chr9:101867304-101867627(+)$1	1	166	180	19.6612
((((.((((..(((	chr19:6739609-6739897(+)$1	1	27	41	20.1451
((((.((.((((((	chr6:33179103-33179366(+)$1	1	39	53	23.9354
...(((.((.((((	chr2:54197719-54198016(-)$1	1	37	51	24.2580

#PSSM
G : 0.59	g : 0.25	C : 0.06	U : 0.04	A : 0.01	a : 0.01	
G : 0.61	g : 0.22	A : 0.06	c : 0.03	C : 0.03	a : 0.01	U : 0.01	
G : 0.72	g : 0.27	
G : 0.58	g : 0.25	A : 0.09	C : 0.03	c : 0.01	U : 0.01	
U : 0.45	A : 0.14	u : 0.12	c : 0.08	C : 0.08	G : 0.06	g : 0.03	a : 0.01	
G : 0.58	g : 0.25	U : 0.06	A : 0.04	c : 0.01	C : 0.01	u : 0.01	
G : 0.59	g : 0.24	U : 0.06	C : 0.03	A : 0.01	a : 0.01	u : 0.01	c : 0.01	
G : 0.61	g : 0.27	A : 0.06	C : 0.03	U : 0.01	
G : 0.58	g : 0.22	A : 0.06	C : 0.04	U : 0.03	a : 0.01	u : 0.01	c : 0.01	
G : 0.62	g : 0.22	C : 0.06	c : 0.03	U : 0.03	a : 0.01	
U : 0.37	C : 0.12	A : 0.11	G : 0.11	u : 0.09	a : 0.08	c : 0.04	g : 0.04	
G : 0.56	g : 0.20	U : 0.08	A : 0.04	a : 0.03	c : 0.03	C : 0.03	
G : 0.72	g : 0.27	
G : 0.64	g : 0.22	C : 0.06	c : 0.03	U : 0.01	a : 0.01	

#score	1329.64516129032
#seq	62
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_CDS_m2_run2.nuc.txt

#NT
cugg	chr19:10407083-10407366(+)$1	283	105	109	11.9999
CUGG	chr22:19865540-19865810(-)$1	270	0	4	11.9999
CUGG	chr22:50016766-50017051(-)$1	285	18	22	11.9999
CUGG	chr19:2425982-2426253(-)$1	271	148	152	11.9999
CUGG	chr20:60884671-60884893(-)$1	222	28	32	11.9999
CUGG	chr11:294550-294809(+)$1	259	32	36	11.9999
CUGG	chr17:46628023-46628315(+)$1	292	41	45	11.9999
CUGG	chr7:1474135-1474423(-)$1	288	37	41	11.9999
CUGG	chr19:18547582-18547850(-)$1	268	80	84	11.9999
CUGG	chr17:79993818-79994098(-)$1	280	29	33	11.9999
CUGG	chr19:50163963-50164228(-)$1	265	22	26	11.9999
CUGG	chr2:20821927-20822186(-)$1	259	131	135	11.9999
CUGG	chr22:50018406-50018666(-)$1	260	52	56	11.9999
CUGG	chr16:67862303-67862563(-)$1	260	1	5	11.9999
CUGG	chr19:1227712-1228044(+)$1	332	168	172	11.9999
cugg	chr19:10406926-10407198(+)$1	272	138	142	11.9999
CUGG	chr5:10262491-10262716(+)$1	225	212	216	11.9999
CUGG	chr19:41889442-41889750(+)$1	308	129	133	11.9999
CUGG	chr6:33259695-33260047(-)$1	352	56	60	11.9999
CUGG	chr17:76109122-76109396(-)$1	274	9	13	11.9999
CUGG	chr9:140005231-140005477(-)$1	246	23	27	11.9999
CUGG	chr1:1155930-1156230(-)$1	300	132	136	11.9999
CUGG	chr17:37009178-37009420(-)$1	242	77	81	11.9999
CUGG	chr6:31639923-31640164(+)$1	241	1	5	11.9999
CUGG	chr16:89977515-89977774(+)$1	259	38	42	11.9999
CUGG	chr22:20100593-20100847(-)$1	254	33	37	11.9999
CUGG	chr7:934872-935120(+)$1	248	4	8	11.9999
CUGG	chr16:31202298-31202532(+)$1	234	114	118	11.9999
CUGG	chr16:2871466-2871726(+)$1	260	82	86	11.9999
CUGG	chr17:80443423-80443631(+)$1	208	101	105	11.9999
CUGG	chr16:239117-239441(-)$1	324	11	15	11.9999
CUGG	chr1:52254948-52255202(-)$1	254	55	59	11.9999
CUGG	chr11:64011358-64011599(+)$1	241	46	50	11.9999
cugg	chr16:23700407-23700691(+)$1	284	9	13	11.9999
CUGG	chr9:140005006-140005300(-)$1	294	28	32	11.9999
CUGG	chr16:67862465-67862731(-)$1	266	77	81	11.9999
CUGG	chr11:294058-294295(+)$1	237	151	155	11.9999
CUGG	chr19:41135327-41135578(+)$1	251	131	135	11.9999
CUGG	chr16:67862274-67862503(-)$1	229	56	60	11.9999
CUGG	chr6:33383629-33383934(+)$1	305	109	113	11.9999
CUGG	chr22:20100027-20100296(-)$1	269	188	192	11.9999
CUGG	chr2:74689769-74690015(-)$1	246	153	157	11.9999
CUGG	chr7:142638172-142638499(-)$1	327	154	158	11.9999
CUGG	chr8:145737531-145737787(-)$1	256	40	44	11.9999
CUGG	chr16:31202614-31202843(+)$1	229	9	13	11.9999
CUGG	chr19:2270329-2270593(+)$1	264	110	114	11.9999
CUGG	chr14:102515941-102516215(+)$1	274	20	24	11.9999
CUGG	chr11:639269-639549(+)$1	280	35	39	11.9999
CUGG	chr5:10261727-10261958(+)$1	231	7	11	11.9999
CUGG	chr16:89006630-89006920(-)$1	290	144	148	11.9999
CUGG	chr11:293514-293724(+)$1	210	43	47	11.9999
CUGG	chr16:31202645-31202847(+)$1	202	24	28	11.9999
CUGG	chr17:79526315-79526540(-)$1	225	41	45	11.9999
CUGG	chr11:67817869-67818147(+)$1	278	34	38	11.9999
CUGG	chr19:798402-798726(+)$1	324	115	119	11.9999
CUGG	chr17:80445688-80445951(+)$1	263	249	253	11.9999
CUGG	chr16:778878-779142(+)$1	264	7	11	11.9999
CUGG	chr19:50162936-50163186(-)$1	250	55	59	11.9999
CUGG	chrM:14201-14422(-)$1	221	214	218	11.9999
CUGG	chr11:67379598-67379837(+)$1	239	108	112	11.9999
CUGG	chr16:778841-779078(+)$1	237	44	48	11.9999
CUGG	chr9:140005100-140005335(-)$1	235	21	25	11.9999
CUGG	chrX:48652237-48652505(+)$1	268	20	24	11.9999
CUGG	chr17:76113888-76114164(-)$1	276	44	48	11.9999
CUGG	chr8:145617871-145618139(+)$1	268	78	82	11.9999
CUGG	chr16:18794305-18794533(-)$1	228	132	136	11.9999
CUGG	chr22:50873283-50873574(+)$1	291	22	26	11.9999
CUGG	chr17:37009226-37009434(-)$1	208	91	95	11.9999
CUGG	chr19:1468354-1468632(-)$1	278	47	51	11.9999
CUGG	chr22:50685256-50685507(-)$1	251	59	63	11.9999
CUGG	chr1:155290189-155290467(+)$1	278	70	74	11.9999
CUGG	chr8:145106190-145106464(-)$1	274	178	182	11.9999
CUGG	chr19:2272586-2272821(+)$1	235	40	44	11.9999
CUGG	chr7:930551-930797(+)$1	246	81	85	11.9999
CUGG	chr7:933374-933640(+)$1	266	92	96	11.9999
CUGG	chr1:150531382-150531623(+)$1	241	155	159	11.9999
CUGG	chr10:104180922-104181225(+)$1	303	79	83	11.9999
CUGG	chr11:639706-639991(+)$1	285	101	105	11.9999
CUGG	chr3:49052870-49053183(+)$1	313	289	293	11.9999
CUGG	chr16:722617-722845(+)$1	228	9	13	11.9999
CUGG	chr17:80850926-80851219(+)$1	293	13	17	11.9999
CUGG	chr16:29708606-29708876(+)$1	270	183	187	11.9999
CUGG	chr1:32827583-32827856(-)$1	273	62	66	11.9999
CUGG	chr11:637327-637590(+)$1	263	13	17	11.9999
CUGG	chr7:100171695-100171981(-)$1	286	29	33	11.9999
CUGG	chr17:37009220-37009424(-)$1	204	81	85	11.9999
CUGG	chr22:19711584-19711816(+)$1	232	4	8	11.9999
CUGG	chr7:150647088-150647340(-)$1	252	1	5	11.9999
CUGG	chr5:1815888-1816167(+)$1	279	215	219	11.9999
CUGG	chr12:117476878-117477187(-)$1	309	38	42	11.9999
CUGG	chr7:99751398-99751733(+)$1	335	59	63	11.9999
CUGG	chr1:156109470-156109770(+)$1	300	169	173	11.9999

#otherMatches

#Struct PSSM
ggg'	chr19:18546275-18546521(-)$1	246	80	84	11.9999
!ddd	chr19:10407083-10407366(+)$1	283	105	109	11.9999
ccc"	chr22:19865540-19865810(-)$1	270	0	4	11.9999
ddde	chr22:50016766-50017051(-)$1	285	18	22	11.9999
""ff	chr19:2425982-2426253(-)$1	271	148	152	11.9999
C{BB	chr20:60884671-60884893(-)$1	222	28	32	11.9999
CHHH	chr11:294550-294809(+)$1	259	32	36	11.9999
ccc"	chr17:46628023-46628315(+)$1	292	41	45	11.9999
eecc	chr7:1474135-1474423(-)$1	288	37	41	11.9999
]bbg	chr19:18547582-18547850(-)$1	268	80	84	11.9999
wwww	chr17:79993818-79994098(-)$1	280	29	33	11.9999
====	chr19:50163963-50164228(-)$1	265	22	26	11.9999
occc	chr2:20821927-20822186(-)$1	259	131	135	11.9999
dd:E	chr22:50018406-50018666(-)$1	260	52	56	11.9999
::CC	chr16:67862303-67862563(-)$1	260	1	5	11.9999
CCC}	chr19:1227712-1228044(+)$1	332	168	172	11.9999
===[	chr19:10406926-10407198(+)$1	272	138	142	11.9999
CCcc	chr5:10262491-10262716(+)$1	225	212	216	11.9999
eeee	chr19:41889442-41889750(+)$1	308	129	133	11.9999
DDDD	chr6:33259695-33260047(-)$1	352	56	60	11.9999
::ff	chr17:76109122-76109396(-)$1	274	9	13	11.9999
KKDD	chr9:140005231-140005477(-)$1	246	23	27	11.9999
gggg	chr1:1155930-1156230(-)$1	300	132	136	11.9999
:::f	chr17:37009178-37009420(-)$1	242	77	81	11.9999
:DDD	chr6:31639923-31640164(+)$1	241	1	5	11.9999
CCEE	chr16:89977515-89977774(+)$1	259	38	42	11.9999
{EEE	chr22:20100593-20100847(-)$1	254	33	37	11.9999
::::	chr7:934872-935120(+)$1	248	4	8	11.9999
HHKK	chr16:31202298-31202532(+)$1	234	114	118	11.9999
eeee	chr16:2871466-2871726(+)$1	260	82	86	11.9999
pppp	chr17:80443423-80443631(+)$1	208	101	105	11.9999
ooee	chr16:239117-239441(-)$1	324	11	15	11.9999
]bb]	chr1:52254948-52255202(-)$1	254	55	59	11.9999
!!ee	chr11:64011358-64011599(+)$1	241	46	50	11.9999
!!cc	chr16:23700407-23700691(+)$1	284	9	13	11.9999
d:ff	chr9:140005006-140005300(-)$1	294	28	32	11.9999
eeee	chr16:67862465-67862731(-)$1	266	77	81	11.9999
[fff	chr11:294058-294295(+)$1	237	151	155	11.9999
dddd	chr19:41135327-41135578(+)$1	251	131	135	11.9999
====	chr16:67862274-67862503(-)$1	229	56	60	11.9999
ffff	chr6:33383629-33383934(+)$1	305	109	113	11.9999
eeee	chr22:20100027-20100296(-)$1	269	188	192	11.9999
fffn	chr2:74689769-74690015(-)$1	246	153	157	11.9999
:ggg	chr7:142638172-142638499(-)$1	327	154	158	11.9999
KKCC	chr8:145737531-145737787(-)$1	256	40	44	11.9999
lldd	chr16:31202614-31202843(+)$1	229	9	13	11.9999
a]bb	chr19:2270329-2270593(+)$1	264	110	114	11.9999
FFFL	chr14:102515941-102516215(+)$1	274	20	24	11.9999
$$dd	chr11:639269-639549(+)$1	280	35	39	11.9999
JJJJ	chr5:10261727-10261958(+)$1	231	7	11	11.9999
dd44	chr16:89006630-89006920(-)$1	290	144	148	11.9999
ffff	chr11:293514-293724(+)$1	210	43	47	11.9999
$$cc	chr16:31202645-31202847(+)$1	202	24	28	11.9999
qqdd	chr17:79526315-79526540(-)$1	225	41	45	11.9999
====	chr11:67817869-67818147(+)$1	278	34	38	11.9999
ccc2	chr19:798402-798726(+)$1	324	115	119	11.9999
EEE:	chr17:80445688-80445951(+)$1	263	249	253	11.9999
HHHH	chr16:778878-779142(+)$1	264	7	11	11.9999
a[cc	chr19:50162936-50163186(-)$1	250	55	59	11.9999
::::	chrM:14201-14422(-)$1	221	214	218	11.9999
FFFF	chr11:67379598-67379837(+)$1	239	108	112	11.9999
ccoo	chr16:778841-779078(+)$1	237	44	48	11.9999
HHKK	chr9:140005100-140005335(-)$1	235	21	25	11.9999
ccpp	chrX:48652237-48652505(+)$1	268	20	24	11.9999
hhhh	chr17:76113888-76114164(-)$1	276	44	48	11.9999
eeee	chr8:145617871-145618139(+)$1	268	78	82	11.9999
cc!!	chr16:18794305-18794533(-)$1	228	132	136	11.9999
gggg	chr22:50873283-50873574(+)$1	291	22	26	11.9999
]ccc	chr17:37009226-37009434(-)$1	208	91	95	11.9999
b[ff	chr19:1468354-1468632(-)$1	278	47	51	11.9999
66dd	chr22:50685256-50685507(-)$1	251	59	63	11.9999
eeee	chr1:155290189-155290467(+)$1	278	70	74	11.9999
__A}	chr8:145106190-145106464(-)$1	274	178	182	11.9999
HHHH	chr19:2272586-2272821(+)$1	235	40	44	11.9999
cc:e	chr7:930551-930797(+)$1	246	81	85	11.9999
ee!!	chr7:933374-933640(+)$1	266	92	96	11.9999
##dd	chr1:150531382-150531623(+)$1	241	155	159	11.9999
eeee	chr10:104180922-104181225(+)$1	303	79	83	11.9999
::ff	chr11:639706-639991(+)$1	285	101	105	11.9999
ADDD	chr3:49052870-49053183(+)$1	313	289	293	11.9999
DDDB	chr16:722617-722845(+)$1	228	9	13	11.9999
iiii	chr17:80850926-80851219(+)$1	293	13	17	11.9999
!!dd	chr16:29708606-29708876(+)$1	270	183	187	11.9999
ccc[	chr1:32827583-32827856(-)$1	273	62	66	11.9999
EEEE	chr11:637327-637590(+)$1	263	13	17	11.9999
FFKK	chr7:100171695-100171981(-)$1	286	29	33	11.9999
KBBD	chr17:37009220-37009424(-)$1	204	81	85	11.9999
EEEE	chr22:19711584-19711816(+)$1	232	4	8	11.9999
CC{B	chr7:150647088-150647340(-)$1	252	1	5	11.9999
nna]	chr5:1815888-1816167(+)$1	279	215	219	11.9999
ccc2	chr12:117476878-117477187(-)$1	309	38	42	11.9999
blll	chr7:99751398-99751733(+)$1	335	59	63	11.9999
FFFF	chr1:156109470-156109770(+)$1	300	169	173	11.9999

#DB
(((.	chr19:18546275-18546521(-)$1	1	80	84	11.9999
.(((	chr19:10407083-10407366(+)$1	1	105	109	11.9999
(((.	chr22:19865540-19865810(-)$1	1	0	4	11.9999
)))(	chr22:50016766-50017051(-)$1	1	18	22	11.9999
..((	chr19:2425982-2426253(-)$1	1	148	152	11.9999
(.((	chr20:60884671-60884893(-)$1	1	28	32	11.9999
((((	chr11:294550-294809(+)$1	1	32	36	11.9999
(((.	chr17:46628023-46628315(+)$1	1	41	45	11.9999
))((	chr7:1474135-1474423(-)$1	1	37	41	11.9999
.))(	chr19:18547582-18547850(-)$1	1	80	84	11.9999
....	chr17:79993818-79994098(-)$1	1	29	33	11.9999
((((	chr19:50163963-50164228(-)$1	1	22	26	11.9999
.)))	chr2:20821927-20822186(-)$1	1	131	135	11.9999
)).(	chr22:50018406-50018666(-)$1	1	52	56	11.9999
..((	chr16:67862303-67862563(-)$1	1	1	5	11.9999
))).	chr19:1227712-1228044(+)$1	1	168	172	11.9999
(((.	chr19:10406926-10407198(+)$1	1	138	142	11.9999
))((	chr5:10262491-10262716(+)$1	1	212	216	11.9999
))))	chr19:41889442-41889750(+)$1	1	129	133	11.9999
((((	chr6:33259695-33260047(-)$1	1	56	60	11.9999
..((	chr17:76109122-76109396(-)$1	1	9	13	11.9999
..((	chr9:140005231-140005477(-)$1	1	23	27	11.9999
))))	chr1:1155930-1156230(-)$1	1	132	136	11.9999
...(	chr17:37009178-37009420(-)$1	1	77	81	11.9999
.(((	chr6:31639923-31640164(+)$1	1	1	5	11.9999
((((	chr16:89977515-89977774(+)$1	1	38	42	11.9999
.(((	chr22:20100593-20100847(-)$1	1	33	37	11.9999
....	chr7:934872-935120(+)$1	1	4	8	11.9999
((..	chr16:31202298-31202532(+)$1	1	114	118	11.9999
))))	chr16:2871466-2871726(+)$1	1	82	86	11.9999
....	chr17:80443423-80443631(+)$1	1	101	105	11.9999
..))	chr16:239117-239441(-)$1	1	11	15	11.9999
.)).	chr1:52254948-52255202(-)$1	1	55	59	11.9999
..((	chr11:64011358-64011599(+)$1	1	46	50	11.9999
..((	chr16:23700407-23700691(+)$1	1	9	13	11.9999
).((	chr9:140005006-140005300(-)$1	1	28	32	11.9999
))))	chr16:67862465-67862731(-)$1	1	77	81	11.9999
.(((	chr11:294058-294295(+)$1	1	151	155	11.9999
)(((	chr19:41135327-41135578(+)$1	1	131	135	11.9999
))))	chr16:67862274-67862503(-)$1	1	56	60	11.9999
))))	chr6:33383629-33383934(+)$1	1	109	113	11.9999
((((	chr22:20100027-20100296(-)$1	1	188	192	11.9999
(((.	chr2:74689769-74690015(-)$1	1	153	157	11.9999
.(((	chr7:142638172-142638499(-)$1	1	154	158	11.9999
..((	chr8:145737531-145737787(-)$1	1	40	44	11.9999
..))	chr16:31202614-31202843(+)$1	1	9	13	11.9999
).))	chr19:2270329-2270593(+)$1	1	110	114	11.9999
(((.	chr14:102515941-102516215(+)$1	1	20	24	11.9999
..((	chr11:639269-639549(+)$1	1	35	39	11.9999
((((	chr5:10261727-10261958(+)$1	1	7	11	11.9999
))..	chr16:89006630-89006920(-)$1	1	144	148	11.9999
((((	chr11:293514-293724(+)$1	1	43	47	11.9999
..((	chr16:31202645-31202847(+)$1	1	24	28	11.9999
..))	chr17:79526315-79526540(-)$1	1	41	45	11.9999
((((	chr11:67817869-67818147(+)$1	1	34	38	11.9999
))).	chr19:798402-798726(+)$1	1	115	119	11.9999
))).	chr17:80445688-80445951(+)$1	1	249	253	11.9999
((((	chr16:778878-779142(+)$1	1	7	11	11.9999
(.((	chr19:50162936-50163186(-)$1	1	55	59	11.9999
....	chrM:14201-14422(-)$1	1	214	218	11.9999
((((	chr11:67379598-67379837(+)$1	1	108	112	11.9999
((..	chr16:778841-779078(+)$1	1	44	48	11.9999
((..	chr9:140005100-140005335(-)$1	1	21	25	11.9999
((..	chrX:48652237-48652505(+)$1	1	20	24	11.9999
))))	chr17:76113888-76114164(-)$1	1	44	48	11.9999
((((	chr8:145617871-145618139(+)$1	1	78	82	11.9999
((..	chr16:18794305-18794533(-)$1	1	132	136	11.9999
((((	chr22:50873283-50873574(+)$1	1	22	26	11.9999
.)))	chr17:37009226-37009434(-)$1	1	91	95	11.9999
(.((	chr19:1468354-1468632(-)$1	1	47	51	11.9999
..))	chr22:50685256-50685507(-)$1	1	59	63	11.9999
((((	chr1:155290189-155290467(+)$1	1	70	74	11.9999
..).	chr8:145106190-145106464(-)$1	1	178	182	11.9999
((((	chr19:2272586-2272821(+)$1	1	40	44	11.9999
)).(	chr7:930551-930797(+)$1	1	81	85	11.9999
((..	chr7:933374-933640(+)$1	1	92	96	11.9999
..((	chr1:150531382-150531623(+)$1	1	155	159	11.9999
((((	chr10:104180922-104181225(+)$1	1	79	83	11.9999
..((	chr11:639706-639991(+)$1	1	101	105	11.9999
))))	chr3:49052870-49053183(+)$1	1	289	293	11.9999
((((	chr16:722617-722845(+)$1	1	9	13	11.9999
((((	chr17:80850926-80851219(+)$1	1	13	17	11.9999
..((	chr16:29708606-29708876(+)$1	1	183	187	11.9999
(((.	chr1:32827583-32827856(-)$1	1	62	66	11.9999
((((	chr11:637327-637590(+)$1	1	13	17	11.9999
((..	chr7:100171695-100171981(-)$1	1	29	33	11.9999
.(((	chr17:37009220-37009424(-)$1	1	81	85	11.9999
((((	chr22:19711584-19711816(+)$1	1	4	8	11.9999
((.(	chr7:150647088-150647340(-)$1	1	1	5	11.9999
..).	chr5:1815888-1816167(+)$1	1	215	219	11.9999
))).	chr12:117476878-117477187(-)$1	1	38	42	11.9999
(...	chr7:99751398-99751733(+)$1	1	59	63	11.9999
))))	chr1:156109470-156109770(+)$1	1	169	173	11.9999

#PSSM
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	1115.9999999999998
#seq	93
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_UTR_m2_run2.nuc.txt

#NT
aauuu	chr5:96370360-96370620(+)$1	260	61	66	15.0000
AAUUU	chr3:172116914-172117175(+)$1	261	93	98	15.0000
AAUUU	chr4:48863064-48863354(+)$1	290	89	94	15.0000
AAUUU	chr16:84087292-84087574(-)$1	282	131	136	15.0000
AAUUU	chr6:41067040-41067332(+)$1	292	131	136	15.0000
AAUUU	chr11:20142676-20142928(+)$1	252	24	29	15.0000
AAUUU	chr6:49459919-49460198(+)$1	279	100	105	15.0000
AAUUU	chr12:77246076-77246347(+)$1	271	82	87	15.0000
AAUUU	chr20:49551312-49551561(-)$1	249	3	8	15.0000
AAUUU	chr2:43450345-43450603(-)$1	258	31	36	15.0000
AAUUU	chr2:20191842-20192081(-)$1	239	136	141	15.0000
AAUUU	chr5:179203963-179204236(+)$1	273	35	40	15.0000
AAUUU	chr6:17615407-17615685(-)$1	278	27	32	15.0000
AAUUU	chr5:82351253-82351546(-)$1	293	6	11	15.0000
AAUUU	chr1:31404948-31405202(-)$1	254	23	28	15.0000
AAUUU	chr13:98045349-98045603(+)$1	254	34	39	15.0000
AAUUU	chr12:76423506-76423743(-)$1	237	101	106	15.0000
AAUUU	chr5:40762371-40762712(-)$1	341	137	142	15.0000
AAUUU	chr8:6614898-6615186(+)$1	288	91	96	15.0000
AAUUU	chr14:53194298-53194553(+)$1	255	35	40	15.0000
AAUUU	chr8:17427711-17427951(+)$1	240	202	207	15.0000
AAUUU	chr3:98514742-98515024(-)$1	282	87	92	15.0000
AAUUU	chr1:87570772-87571138(+)$1	366	90	95	15.0000
AAUUU	chr20:47729991-47730239(-)$1	248	114	119	15.0000
AAUUU	chr1:234742573-234742824(-)$1	251	66	71	15.0000
AAUUU	chr4:113189586-113189871(+)$1	285	159	164	15.0000
AAUUU	chr3:193856128-193856380(+)$1	252	22	27	15.0000
AAUUU	chr12:115108575-115108820(-)$1	245	151	156	15.0000
AAUUU	chr14:94745858-94746131(+)$1	273	121	126	15.0000
AAUUU	chr6:64292233-64292469(+)$1	236	35	40	15.0000
AAUUU	chr2:165542108-165542358(-)$1	250	22	27	15.0000
AAUUU	chr6:89794104-89794393(+)$1	289	100	105	15.0000
AAUUU	chrX:39910483-39910729(-)$1	246	97	102	15.0000
AAUUU	chr17:18709265-18709517(+)$1	252	131	136	15.0000
aauuu	chr11:105968915-105969169(+)$1	254	2	7	15.0000
AAUUU	chr17:38544736-38545018(-)$1	282	86	91	15.0000
AAUUU	chr2:26613250-26613541(+)$1	291	116	121	15.0000
AAUUU	chr14:39501806-39502032(-)$1	226	41	46	15.0000
AAUUU	chr13:114203924-114204197(+)$1	273	104	109	15.0000
AAUUU	chr2:64862456-64862734(-)$1	278	213	218	15.0000
AAUUU	chr3:176738479-176738756(-)$1	277	164	169	15.0000
AAUUU	chr3:142775423-142775658(+)$1	235	88	93	15.0000
AAUUU	chr6:132269472-132269745(-)$1	273	59	64	15.0000
AAUUU	chr2:177202259-177202655(+)$1	396	209	214	15.0000
AAUUU	chr22:35789907-35790174(+)$1	267	58	63	15.0000
AAUUU	chr17:73774399-73774773(-)$1	374	152	157	15.0000
AAUUU	chr3:124947377-124947645(-)$1	268	141	146	15.0000
AAUUU	chr6:56970113-56970379(+)$1	266	145	150	15.0000
AAUUU	chr6:159054738-159055051(+)$1	313	82	87	15.0000
AAUUU	chr12:104513118-104513389(-)$1	271	70	75	15.0000
AAUUU	chr6:145173811-145174108(+)$1	297	116	121	15.0000
AAUUU	chr17:53470176-53470408(-)$1	232	96	101	15.0000
AAUUU	chr7:7287976-7288241(+)$1	265	88	93	15.0000
AAUUU	chr8:97622449-97622686(+)$1	237	131	136	15.0000
AAUUU	chr13:73283863-73284141(-)$1	278	92	97	15.0000
AAUUU	chr8:87570777-87571086(+)$1	309	73	78	15.0000
AAUUU	chr1:92147061-92147354(-)$1	293	76	81	15.0000
AAUUU	chr10:77157812-77158092(-)$1	280	154	159	15.0000
AAUUU	chr3:47627375-47627709(-)$1	334	10	15	15.0000
AAUUU	chr2:28639560-28639823(+)$1	263	233	238	15.0000
AAUUU	chr12:76745995-76746264(-)$1	269	7	12	15.0000
AAUUU	chr20:8865174-8865400(+)$1	226	0	5	15.0000
AAUUU	chr4:120980561-120980839(-)$1	278	104	109	15.0000
AAUUU	chr16:18803021-18803237(-)$1	216	85	90	15.0000
AAUUU	chr2:223807280-223807523(+)$1	243	204	209	15.0000
AAUUU	chr9:123943124-123943384(-)$1	260	64	69	15.0000
AAUUU	chr6:163990801-163991106(+)$1	305	78	83	15.0000
AAUUU	chr15:68585843-68586147(+)$1	304	45	50	15.0000
AAUUU	chr1:23636203-23636461(-)$1	258	69	74	15.0000
AAUUU	chr15:78791917-78792185(+)$1	268	76	81	15.0000
AAUUU	chr12:89741836-89742123(-)$1	287	99	104	15.0000
AAUUU	chr7:139246300-139246568(-)$1	268	161	166	15.0000
AAUUU	chr1:169101577-169101787(+)$1	210	7	12	15.0000
AAUUU	chr4:88904319-88904583(+)$1	264	10	15	15.0000
AAUUU	chr8:17425081-17425341(+)$1	260	142	147	15.0000

#otherMatches

#Struct PSSM
==]ff	chr2:152331872-152332099(+)$1	227	83	88	15.0000
gssss	chr5:96370360-96370620(+)$1	260	61	66	15.0000
hhh$$	chr3:172116914-172117175(+)$1	261	93	98	15.0000
iiiii	chr4:48863064-48863354(+)$1	290	89	94	15.0000
%%%ff	chr16:84087292-84087574(-)$1	282	131	136	15.0000
:HHHH	chr6:41067040-41067332(+)$1	292	131	136	15.0000
LLEEE	chr11:20142676-20142928(+)$1	252	24	29	15.0000
:::::	chr6:49459919-49460198(+)$1	279	100	105	15.0000
:::::	chr12:77246076-77246347(+)$1	271	82	87	15.0000
::::B	chr20:49551312-49551561(-)$1	249	3	8	15.0000
:::::	chr2:43450345-43450603(-)$1	258	31	36	15.0000
sssss	chr2:20191842-20192081(-)$1	239	136	141	15.0000
g::::	chr5:179203963-179204236(+)$1	273	35	40	15.0000
ee444	chr6:17615407-17615685(-)$1	278	27	32	15.0000
c[eee	chr5:82351253-82351546(-)$1	293	6	11	15.0000
dxxxx	chr1:31404948-31405202(-)$1	254	23	28	15.0000
$$$cc	chr13:98045349-98045603(+)$1	254	34	39	15.0000
d::::	chr12:76423506-76423743(-)$1	237	101	106	15.0000
^^^^^	chr5:40762371-40762712(-)$1	341	137	142	15.0000
sssss	chr8:6614898-6615186(+)$1	288	91	96	15.0000
HHHHH	chr14:53194298-53194553(+)$1	255	35	40	15.0000
:::::	chr8:17427711-17427951(+)$1	240	202	207	15.0000
B::::	chr3:98514742-98515024(-)$1	282	87	92	15.0000
ii:::	chr1:87570772-87571138(+)$1	366	90	95	15.0000
cpppp	chr20:47729991-47730239(-)$1	248	114	119	15.0000
####d	chr1:234742573-234742824(-)$1	251	66	71	15.0000
ctttt	chr4:113189586-113189871(+)$1	285	159	164	15.0000
JJ:::	chr3:193856128-193856380(+)$1	252	22	27	15.0000
cc###	chr12:115108575-115108820(-)$1	245	151	156	15.0000
odddd	chr14:94745858-94746131(+)$1	273	121	126	15.0000
=====	chr6:64292233-64292469(+)$1	236	35	40	15.0000
eeeee	chr2:165542108-165542358(-)$1	250	22	27	15.0000
22===	chr6:89794104-89794393(+)$1	289	100	105	15.0000
%%%dd	chrX:39910483-39910729(-)$1	246	97	102	15.0000
c:::E	chr17:18709265-18709517(+)$1	252	131	136	15.0000
:gggg	chr11:105968915-105969169(+)$1	254	2	7	15.0000
ddyyy	chr17:38544736-38545018(-)$1	282	86	91	15.0000
ttttt	chr2:26613250-26613541(+)$1	291	116	121	15.0000
00000	chr14:39501806-39502032(-)$1	226	41	46	15.0000
eee]c	chr13:114203924-114204197(+)$1	273	104	109	15.0000
HHHHH	chr2:64862456-64862734(-)$1	278	213	218	15.0000
ddd22	chr3:176738479-176738756(-)$1	277	164	169	15.0000
=====	chr3:142775423-142775658(+)$1	235	88	93	15.0000
%%%dd	chr6:132269472-132269745(-)$1	273	59	64	15.0000
4dddd	chr2:177202259-177202655(+)$1	396	209	214	15.0000
::::J	chr22:35789907-35790174(+)$1	267	58	63	15.0000
:::::	chr17:73774399-73774773(-)$1	374	152	157	15.0000
:::CC	chr3:124947377-124947645(-)$1	268	141	146	15.0000
####h	chr6:56970113-56970379(+)$1	266	145	150	15.0000
hh333	chr6:159054738-159055051(+)$1	313	82	87	15.0000
MIIII	chr12:104513118-104513389(-)$1	271	70	75	15.0000
88888	chr6:145173811-145174108(+)$1	297	116	121	15.0000
b333=	chr17:53470176-53470408(-)$1	232	96	101	15.0000
FFFFF	chr7:7287976-7288241(+)$1	265	88	93	15.0000
g]a22	chr8:97622449-97622686(+)$1	237	131	136	15.0000
=====	chr13:73283863-73284141(-)$1	278	92	97	15.0000
ffffo	chr8:87570777-87571086(+)$1	309	73	78	15.0000
ppppp	chr1:92147061-92147354(-)$1	293	76	81	15.0000
dddd]	chr10:77157812-77158092(-)$1	280	154	159	15.0000
:::::	chr3:47627375-47627709(-)$1	334	10	15	15.0000
:::::	chr2:28639560-28639823(+)$1	263	233	238	15.0000
::::F	chr12:76745995-76746264(-)$1	269	7	12	15.0000
:::::	chr20:8865174-8865400(+)$1	226	0	5	15.0000
[eeee	chr4:120980561-120980839(-)$1	278	104	109	15.0000
:::::	chr16:18803021-18803237(-)$1	216	85	90	15.0000
::III	chr2:223807280-223807523(+)$1	243	204	209	15.0000
uuuuf	chr9:123943124-123943384(-)$1	260	64	69	15.0000
ennnn	chr6:163990801-163991106(+)$1	305	78	83	15.0000
{DDDD	chr15:68585843-68586147(+)$1	304	45	50	15.0000
llldd	chr1:23636203-23636461(-)$1	258	69	74	15.0000
::JJJ	chr15:78791917-78792185(+)$1	268	76	81	15.0000
^^^^^	chr12:89741836-89742123(-)$1	287	99	104	15.0000
:::::	chr7:139246300-139246568(-)$1	268	161	166	15.0000
::DDD	chr1:169101577-169101787(+)$1	210	7	12	15.0000
GGGHH	chr4:88904319-88904583(+)$1	264	10	15	15.0000
CLLLF	chr8:17425081-17425341(+)$1	260	142	147	15.0000

#DB
)).))	chr2:152331872-152332099(+)$1	1	83	88	15.0000
(....	chr5:96370360-96370620(+)$1	1	61	66	15.0000
(((..	chr3:172116914-172117175(+)$1	1	93	98	15.0000
(((((	chr4:48863064-48863354(+)$1	1	89	94	15.0000
...((	chr16:84087292-84087574(-)$1	1	131	136	15.0000
.))))	chr6:41067040-41067332(+)$1	1	131	136	15.0000
..(((	chr11:20142676-20142928(+)$1	1	24	29	15.0000
.....	chr6:49459919-49460198(+)$1	1	100	105	15.0000
.....	chr12:77246076-77246347(+)$1	1	82	87	15.0000
....(	chr20:49551312-49551561(-)$1	1	3	8	15.0000
.....	chr2:43450345-43450603(-)$1	1	31	36	15.0000
.....	chr2:20191842-20192081(-)$1	1	136	141	15.0000
)....	chr5:179203963-179204236(+)$1	1	35	40	15.0000
))...	chr6:17615407-17615685(-)$1	1	27	32	15.0000
(.(((	chr5:82351253-82351546(-)$1	1	6	11	15.0000
(....	chr1:31404948-31405202(-)$1	1	23	28	15.0000
...((	chr13:98045349-98045603(+)$1	1	34	39	15.0000
)....	chr12:76423506-76423743(-)$1	1	101	106	15.0000
.....	chr5:40762371-40762712(-)$1	1	137	142	15.0000
.....	chr8:6614898-6615186(+)$1	1	91	96	15.0000
(((((	chr14:53194298-53194553(+)$1	1	35	40	15.0000
.....	chr8:17427711-17427951(+)$1	1	202	207	15.0000
(....	chr3:98514742-98515024(-)$1	1	87	92	15.0000
))...	chr1:87570772-87571138(+)$1	1	90	95	15.0000
(....	chr20:47729991-47730239(-)$1	1	114	119	15.0000
....(	chr1:234742573-234742824(-)$1	1	66	71	15.0000
(....	chr4:113189586-113189871(+)$1	1	159	164	15.0000
((...	chr3:193856128-193856380(+)$1	1	22	27	15.0000
((...	chr12:115108575-115108820(-)$1	1	151	156	15.0000
.))))	chr14:94745858-94746131(+)$1	1	121	126	15.0000
(((((	chr6:64292233-64292469(+)$1	1	35	40	15.0000
(((((	chr2:165542108-165542358(-)$1	1	22	27	15.0000
..)))	chr6:89794104-89794393(+)$1	1	100	105	15.0000
...((	chrX:39910483-39910729(-)$1	1	97	102	15.0000
)...)	chr17:18709265-18709517(+)$1	1	131	136	15.0000
.((((	chr11:105968915-105969169(+)$1	1	2	7	15.0000
((...	chr17:38544736-38545018(-)$1	1	86	91	15.0000
.....	chr2:26613250-26613541(+)$1	1	116	121	15.0000
.....	chr14:39501806-39502032(-)$1	1	41	46	15.0000
))).)	chr13:114203924-114204197(+)$1	1	104	109	15.0000
)))))	chr2:64862456-64862734(-)$1	1	213	218	15.0000
)))..	chr3:176738479-176738756(-)$1	1	164	169	15.0000
(((((	chr3:142775423-142775658(+)$1	1	88	93	15.0000
...((	chr6:132269472-132269745(-)$1	1	59	64	15.0000
.))))	chr2:177202259-177202655(+)$1	1	209	214	15.0000
....(	chr22:35789907-35790174(+)$1	1	58	63	15.0000
.....	chr17:73774399-73774773(-)$1	1	152	157	15.0000
...))	chr3:124947377-124947645(-)$1	1	141	146	15.0000
....(	chr6:56970113-56970379(+)$1	1	145	150	15.0000
))...	chr6:159054738-159055051(+)$1	1	82	87	15.0000
.((((	chr12:104513118-104513389(-)$1	1	70	75	15.0000
.....	chr6:145173811-145174108(+)$1	1	116	121	15.0000
)...)	chr17:53470176-53470408(-)$1	1	96	101	15.0000
(((((	chr7:7287976-7288241(+)$1	1	88	93	15.0000
).)..	chr8:97622449-97622686(+)$1	1	131	136	15.0000
)))))	chr13:73283863-73284141(-)$1	1	92	97	15.0000
((((.	chr8:87570777-87571086(+)$1	1	73	78	15.0000
.....	chr1:92147061-92147354(-)$1	1	76	81	15.0000
)))).	chr10:77157812-77158092(-)$1	1	154	159	15.0000
.....	chr3:47627375-47627709(-)$1	1	10	15	15.0000
.....	chr2:28639560-28639823(+)$1	1	233	238	15.0000
....(	chr12:76745995-76746264(-)$1	1	7	12	15.0000
.....	chr20:8865174-8865400(+)$1	1	0	5	15.0000
.((((	chr4:120980561-120980839(-)$1	1	104	109	15.0000
.....	chr16:18803021-18803237(-)$1	1	85	90	15.0000
..)))	chr2:223807280-223807523(+)$1	1	204	209	15.0000
....)	chr9:123943124-123943384(-)$1	1	64	69	15.0000
(....	chr6:163990801-163991106(+)$1	1	78	83	15.0000
.((((	chr15:68585843-68586147(+)$1	1	45	50	15.0000
...))	chr1:23636203-23636461(-)$1	1	69	74	15.0000
..(((	chr15:78791917-78792185(+)$1	1	76	81	15.0000
.....	chr12:89741836-89742123(-)$1	1	99	104	15.0000
.....	chr7:139246300-139246568(-)$1	1	161	166	15.0000
..(((	chr1:169101577-169101787(+)$1	1	7	12	15.0000
(((((	chr4:88904319-88904583(+)$1	1	10	15	15.0000
(...(	chr8:17425081-17425341(+)$1	1	142	147	15.0000

#PSSM
A : 0.97	a : 0.02	
A : 0.97	a : 0.02	
U : 0.97	u : 0.02	
U : 0.97	u : 0.02	
U : 0.97	u : 0.02	

#score	1140.0000000000005
#seq	76
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_UTR_m3_run1.nuc.txt

#NT
GAGGGUGGC	chr19:2425544-2425805(-)$1	261	217	226	16.1964
ggcggaggc	chr2:27665142-27665392(+)$1	250	28	37	13.3392
GUGGGUGGC	chr17:17723830-17724068(-)$1	238	82	91	16.2857
cgggguggc	chr3:14989004-14989273(-)$1	269	35	44	17.0000
GGCGGCGGC	chr20:31172377-31172623(-)$1	246	102	111	13.7857
GGCGGCggc	chr10:80828704-80828978(+)$1	274	79	88	13.7857
GUGGGUGGC	chr12:6797873-6798175(-)$1	302	104	113	16.2857
CGGGGCGGC	chr10:49515076-49515407(+)$1	331	192	201	13.8750
UGGGGUGGC	chr11:611911-612177(+)$1	266	209	218	17.0000
ACGGGUGGC	chr12:113826842-113827091(+)$1	249	1	10	13.7857
GUGGGUGGC	chr15:30114316-30114580(-)$1	264	96	105	16.2857
GCGGGCGGC	chr11:842838-843116(+)$1	278	45	54	13.3392
CGGGGUGGC	chr3:128211682-128211977(+)$1	295	160	169	17.0000
CGGGGUGGG	chr19:49842544-49842801(-)$1	257	11	20	13.5178
GCGUGUggc	chr11:48002240-48002515(+)$1	275	28	37	12.7142
Ggggguggc	chr22:32024681-32024983(-)$1	302	252	261	19.7678
ggcgggggc	chr19:1592525-1592777(-)$1	252	9	18	13.2500
GGGGGUGGG	chr2:62932886-62933150(+)$1	264	99	108	16.2857
GCGGGUGGG	chr17:62501938-62502240(-)$1	302	77	86	12.9821
GGGGGUGGC	chr4:52709582-52709837(+)$1	255	219	228	19.7678
GGCUGUGGC	chr18:22031427-22031680(+)$1	253	224	233	13.1607
GGCGGCGGC	chr17:80231234-80231480(-)$1	246	18	27	13.7857
GGGUGUGGC	chr11:64009185-64009473(+)$1	288	272	281	16.0178
GGGAGUGGC	chr20:62330961-62331181(-)$1	220	49	58	15.6607
agagguggc	chr19:19643834-19644113(+)$1	279	96	105	13.4285
GGGCGUGGC	chr2:676591-676905(-)$1	314	0	9	15.8392
GGGGAUGGC	chr6:41760523-41760783(-)$1	260	72	81	14.9464
UGGGGUGGG	chr16:619317-619574(+)$1	257	45	54	13.5178
GGCUGUGGC	chr11:831785-832042(-)$1	257	14	23	13.1607
GGGGGCGGC	chr12:109124490-109124839(-)$1	349	301	310	16.6428
GGGGGUGGC	chr1:36787708-36787979(+)$1	271	57	66	19.7678
AGGCGUGGC	chr7:6523025-6523297(-)$1	272	11	20	13.1607
CGGGGUGGC	chr12:30907674-30907936(-)$1	262	153	162	17.0000
AGGGGUGGA	chr1:183442008-183442396(+)$1	388	69	78	12.9821
GGGCGUGGC	chr22:32871067-32871343(+)$1	276	138	147	15.8392
UGGGGAGGC	chr14:55255836-55256114(+)$1	278	206	215	13.4285
GGGGGUGCC	chr17:7476602-7476864(+)$1	262	14	23	15.1250
AUGGGUGGC	chr22:19952049-19952299(+)$1	250	31	40	13.6071
GGCGGUGGC	chr19:19639544-19639809(+)$1	265	150	159	16.9107
GGGGGUGGC	chr5:139039024-139039288(+)$1	264	171	180	19.7678
GGGGGUGGG	chr16:29677287-29677600(+)$1	313	110	119	16.2857
gaggguggg	chr22:50013899-50014170(-)$1	271	85	94	12.7142
UGGGGUCGC	chr20:361847-362096(+)$1	249	209	218	12.2678
UGGGGAGGC	chr11:62482160-62482449(-)$1	289	102	111	13.4285
ggcgguggc	chr19:1883511-1883801(-)$1	290	111	120	16.9107
GGAGGCGGC	chr5:661795-662052(+)$1	257	12	21	12.9821
gaggguggg	chr22:50013850-50014099(-)$1	249	14	23	12.7142
gcggggggc	chr6:7108017-7108264(+)$1	247	31	40	12.8035
gcggguggc	chr22:19418893-19419223(-)$1	330	38	47	16.4642
GGGGGUGGG	chr16:28877041-28877300(+)$1	259	220	229	16.2857
GGGGGUUGC	chr1:33283239-33283513(+)$1	274	125	134	15.0357
GGCGGCGGC	chrX:133930861-133931138(-)$1	277	63	72	13.7857
ugcgguggc	chr7:99697927-99698214(-)$1	287	99	108	14.1428
CGGGGUGGC	chr1:151031553-151031819(-)$1	266	3	12	17.0000
AGGGGUGCC	chr19:18554051-18554295(-)$1	244	115	124	12.4464

#otherMatches

#Struct PSSM
ddd22bbcc	chr4:1717883-1718142(-)$1	259	152	161	13.3392
d[ccclllc	chr19:2425544-2425805(-)$1	261	217	226	16.1964
FFFFFCCCF	chr2:27665142-27665392(+)$1	250	28	37	13.3392
ffffff[cc	chr17:17723830-17724068(-)$1	238	82	91	16.2857
CC:FFFFFF	chr3:14989004-14989273(-)$1	269	35	44	17.0000
DDDFFFFFF	chr20:31172377-31172623(-)$1	246	102	111	13.7857
22eeeee22	chr10:80828704-80828978(+)$1	274	79	88	13.7857
qqqqqqeee	chr12:6797873-6798175(-)$1	302	104	113	16.2857
gggggg]dd	chr10:49515076-49515407(+)$1	331	192	201	13.8750
hhhhh[ccc	chr11:611911-612177(+)$1	266	209	218	17.0000
::CCC{CCC	chr12:113826842-113827091(+)$1	249	1	10	13.7857
A{CCC{A{C	chr15:30114316-30114580(-)$1	264	96	105	16.2857
[a[ccc[ee	chr11:842838-843116(+)$1	278	45	54	13.3392
H{A{EEEEE	chr3:128211682-128211977(+)$1	295	160	169	17.0000
hhhhhhhhb	chr19:49842544-49842801(-)$1	257	11	20	13.5178
[ccc"""cc	chr11:48002240-48002515(+)$1	275	28	37	12.7142
DIIIIIIII	chr22:32024681-32024983(-)$1	302	252	261	19.7678
HHHHMMMMC	chr19:1592525-1592777(-)$1	252	9	18	13.2500
444a]a]ee	chr2:62932886-62933150(+)$1	264	99	108	16.2857
ff22dddd:	chr17:62501938-62502240(-)$1	302	77	86	12.9821
}A}DDDD}E	chr4:52709582-52709837(+)$1	255	219	228	19.7678
}CCCZZZCC	chr18:22031427-22031680(+)$1	253	224	233	13.1607
[bb[bb[cc	chr17:80231234-80231480(-)$1	246	18	27	13.7857
EEEYYDDDD	chr11:64009185-64009473(+)$1	288	272	281	16.0178
EEEEE{DDD	chr20:62330961-62331181(-)$1	220	49	58	15.6607
ddDDDD}BB	chr19:19643834-19644113(+)$1	279	96	105	13.4285
a[bb[a[cc	chr2:676591-676905(-)$1	314	0	9	15.8392
dmmmmdddd	chr6:41760523-41760783(-)$1	260	72	81	14.9464
leeeeefff	chr16:619317-619574(+)$1	257	45	54	13.5178
::ccc[ddd	chr11:831785-832042(-)$1	257	14	23	13.1607
ddd!!ffff	chr12:109124490-109124839(-)$1	349	301	310	16.6428
iiiiiiiii	chr1:36787708-36787979(+)$1	271	57	66	19.7678
NCCC{GGGG	chr7:6523025-6523297(-)$1	272	11	20	13.1607
doooooodd	chr12:30907674-30907936(-)$1	262	153	162	17.0000
A{FFFFFF:	chr1:183442008-183442396(+)$1	388	69	78	12.9821
ccooooooc	chr22:32871067-32871343(+)$1	276	138	147	15.8392
gggggglll	chr14:55255836-55256114(+)$1	278	206	215	13.4285
LLLCCC{GG	chr17:7476602-7476864(+)$1	262	14	23	15.1250
%%%dddd&&	chr22:19952049-19952299(+)$1	250	31	40	13.6071
%bb[eeeee	chr19:19639544-19639809(+)$1	265	150	159	16.9107
nnnhhhhhh	chr5:139039024-139039288(+)$1	264	171	180	19.7678
b]ggggggg	chr16:29677287-29677600(+)$1	313	110	119	16.2857
ddd]dddd5	chr22:50013899-50014170(-)$1	271	85	94	12.7142
=========	chr20:361847-362096(+)$1	249	209	218	12.2678
hhhhhhh[b	chr11:62482160-62482449(-)$1	289	102	111	13.4285
:::gggggg	chr19:1883511-1883801(-)$1	290	111	120	16.9107
cmmmmccc]	chr5:661795-662052(+)$1	257	12	21	12.9821
::::BB{A{	chr22:50013850-50014099(-)$1	249	14	23	12.7142
=========	chr6:7108017-7108264(+)$1	247	31	40	12.8035
mmmmbb22g	chr22:19418893-19419223(-)$1	330	38	47	16.4642
iiiiiiqqq	chr16:28877041-28877300(+)$1	259	220	229	16.2857
==dddd]dd	chr1:33283239-33283513(+)$1	274	125	134	15.0357
DDD::eeee	chrX:133930861-133931138(-)$1	277	63	72	13.7857
d]ccc333a	chr7:99697927-99698214(-)$1	287	99	108	14.1428
D::gggggg	chr1:151031553-151031819(-)$1	266	3	12	17.0000
eeemmmmee	chr19:18554051-18554295(-)$1	244	115	124	12.4464

#DB
)))..))))	chr4:1717883-1718142(-)$1	1	152	161	13.3392
(.(((...)	chr19:2425544-2425805(-)$1	1	217	226	16.1964
(((((((((	chr2:27665142-27665392(+)$1	1	28	37	13.3392
((((((.((	chr17:17723830-17724068(-)$1	1	82	91	16.2857
((.((((((	chr3:14989004-14989273(-)$1	1	35	44	17.0000
)))))))))	chr20:31172377-31172623(-)$1	1	102	111	13.7857
..)))))..	chr10:80828704-80828978(+)$1	1	79	88	13.7857
......)))	chr12:6797873-6798175(-)$1	1	104	113	16.2857
)))))).))	chr10:49515076-49515407(+)$1	1	192	201	13.8750
(((((.(((	chr11:611911-612177(+)$1	1	209	218	17.0000
..(((.(((	chr12:113826842-113827091(+)$1	1	1	10	13.7857
(.(((.(.(	chr15:30114316-30114580(-)$1	1	96	105	16.2857
.(.(((.((	chr11:842838-843116(+)$1	1	45	54	13.3392
(.(.(((((	chr3:128211682-128211977(+)$1	1	160	169	17.0000
(((((((((	chr19:49842544-49842801(-)$1	1	11	20	13.5178
.(((...((	chr11:48002240-48002515(+)$1	1	28	37	12.7142
)))))))))	chr22:32024681-32024983(-)$1	1	252	261	19.7678
((((....(	chr19:1592525-1592777(-)$1	1	9	18	13.2500
...).).))	chr2:62932886-62933150(+)$1	1	99	108	16.2857
))..)))).	chr17:62501938-62502240(-)$1	1	77	86	12.9821
.).)))).)	chr4:52709582-52709837(+)$1	1	219	228	19.7678
.)))...))	chr18:22031427-22031680(+)$1	1	224	233	13.1607
.((.((.((	chr17:80231234-80231480(-)$1	1	18	27	13.7857
)))..))))	chr11:64009185-64009473(+)$1	1	272	281	16.0178
(((((.(((	chr20:62330961-62331181(-)$1	1	49	58	15.6607
)))))).))	chr19:19643834-19644113(+)$1	1	96	105	13.4285
(.((.(.((	chr2:676591-676905(-)$1	1	0	9	15.8392
(....))))	chr6:41760523-41760783(-)$1	1	72	81	14.9464
.)))))(((	chr16:619317-619574(+)$1	1	45	54	13.5178
..(((.(((	chr11:831785-832042(-)$1	1	14	23	13.1607
(((..((((	chr12:109124490-109124839(-)$1	1	301	310	16.6428
)))))))))	chr1:36787708-36787979(+)$1	1	57	66	19.7678
.(((.((((	chr7:6523025-6523297(-)$1	1	11	20	13.1607
(......))	chr12:30907674-30907936(-)$1	1	153	162	17.0000
(.((((((.	chr1:183442008-183442396(+)$1	1	69	78	12.9821
((......)	chr22:32871067-32871343(+)$1	1	138	147	15.8392
((((((...	chr14:55255836-55256114(+)$1	1	206	215	13.4285
...(((.((	chr17:7476602-7476864(+)$1	1	14	23	15.1250
...((((..	chr22:19952049-19952299(+)$1	1	31	40	13.6071
.((.(((((	chr19:19639544-19639809(+)$1	1	150	159	16.9107
...))))))	chr5:139039024-139039288(+)$1	1	171	180	19.7678
).)))))))	chr16:29677287-29677600(+)$1	1	110	119	16.2857
))).)))).	chr22:50013899-50014170(-)$1	1	85	94	12.7142
)))))))))	chr20:361847-362096(+)$1	1	209	218	12.2678
(((((((.(	chr11:62482160-62482449(-)$1	1	102	111	13.4285
...((((((	chr19:1883511-1883801(-)$1	1	111	120	16.9107
(....))).	chr5:661795-662052(+)$1	1	12	21	12.9821
....((.(.	chr22:50013850-50014099(-)$1	1	14	23	12.7142
(((((((((	chr6:7108017-7108264(+)$1	1	31	40	12.8035
....))..)	chr22:19418893-19419223(-)$1	1	38	47	16.4642
((((((...	chr16:28877041-28877300(+)$1	1	220	229	16.2857
)))))).))	chr1:33283239-33283513(+)$1	1	125	134	15.0357
(((..((((	chrX:133930861-133931138(-)$1	1	63	72	13.7857
).)))...)	chr7:99697927-99698214(-)$1	1	99	108	14.1428
(..((((((	chr1:151031553-151031819(-)$1	1	3	12	17.0000
(((....))	chr19:18554051-18554295(-)$1	1	115	124	12.4464

#PSSM
G : 0.53	g : 0.12	A : 0.10	C : 0.08	U : 0.08	c : 0.01	a : 0.01	u : 0.01	
G : 0.64	g : 0.12	U : 0.07	C : 0.07	a : 0.03	c : 0.03	A : 0.01	
G : 0.66	C : 0.12	g : 0.10	c : 0.07	a : 0.01	A : 0.01	
G : 0.64	g : 0.19	U : 0.08	C : 0.05	A : 0.01	
G : 0.78	g : 0.19	A : 0.01	
U : 0.62	u : 0.14	C : 0.14	g : 0.03	A : 0.03	a : 0.01	
G : 0.73	g : 0.23	C : 0.01	U : 0.01	
G : 0.73	g : 0.23	C : 0.03	
C : 0.64	c : 0.19	G : 0.10	g : 0.03	A : 0.01	

#score	838.6071428571431
#seq	56
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_CDS_m1_run2.nuc.txt

#NT
CAGGAGG	chr5:71489866-71490112(+)$1	246	112	119	13.7049
GAGGAGG	chr5:71492048-71492300(+)$1	252	185	192	17.8852
GAGGAGG	chr8:144999533-144999816(-)$1	283	70	77	17.8852
GAGGAGG	chr5:71491920-71492210(+)$1	290	106	113	17.8852
GAGAAGG	chr5:71491431-71491669(+)$1	238	82	89	14.5245
GAGGAGG	chr11:71724492-71724737(-)$1	245	62	69	17.8852
GAAGAGG	chr16:89348867-89349114(-)$1	247	20	27	14.0327
GACGAGG	chr16:89348127-89348411(-)$1	284	19	26	14.1967
GAUGAGG	chr7:1132258-1132480(-)$1	222	147	154	14.0327
GACGAGG	chr16:89346985-89347212(-)$1	227	65	72	14.1967
AAGGAGG	chr8:94747774-94748010(-)$1	236	95	102	13.7868
GAGAAGG	chr8:94752685-94752943(-)$1	258	162	169	14.5245
GAGGAGG	chr16:89350039-89350291(-)$1	252	2	9	17.8852
GAGGAGG	chr16:89350125-89350439(-)$1	314	150	157	17.8852
GAGAAGG	chr16:89348751-89348973(-)$1	222	59	66	14.5245
GAGGAGG	chr11:62285356-62285642(-)$1	286	183	190	17.8852
GAGGAGG	chr16:89347792-89348081(-)$1	289	277	284	17.8852
GAGGAGC	chr12:133353498-133353772(-)$1	274	53	60	13.7049
GAGGAGG	chr11:71724630-71724873(-)$1	243	15	22	17.8852
GACGAGG	chr16:89347086-89347350(-)$1	264	203	210	14.1967
GAGAAGG	chr11:62291007-62291233(-)$1	226	194	201	14.5245
GAUGAGG	chr1:16256388-16256638(+)$1	250	160	167	14.0327
gaggagg	chr11:62494204-62494470(-)$1	266	64	71	17.8852
GAGCAGG	chr1:16259147-16259392(+)$1	245	101	108	13.9508
GAAGAGG	chr22:20050697-20050991(+)$1	294	11	18	14.0327
GACGAGG	chr8:41791119-41791403(-)$1	284	52	59	14.1967
CAGGAGG	chr11:71725471-71725735(-)$1	264	172	179	13.7049
GAGGAGA	chr9:134349890-134350156(+)$1	266	17	24	13.5409
GAGGAGG	chr9:133760237-133760484(+)$1	247	64	71	17.8852
GAGGAGC	chr13:108518035-108518327(-)$1	292	3	10	13.7049
GAGAAGG	chr16:89348634-89348889(-)$1	255	44	51	14.5245
GAGGAGG	chr16:89350264-89350500(-)$1	236	211	218	17.8852
GAGGAGG	chr11:71724803-71725026(-)$1	223	168	175	17.8852
GAGGUGG	chr12:125396249-125396514(-)$1	265	13	20	13.3770
GAGGAGC	chr19:55558594-55558900(+)$1	306	45	52	13.7049
GAGGAGG	chr2:96957398-96957640(-)$1	242	154	161	17.8852
GAGGAGG	chr8:94745836-94746125(-)$1	289	52	59	17.8852
GAGGAGG	chr19:49377468-49377731(+)$1	263	213	220	17.8852
CAGGAGG	chr17:20799074-20799334(+)$1	260	248	255	13.7049
GAGAAGG	chr12:6691268-6691482(-)$1	214	115	122	14.5245
GAGGAGG	chr17:27023909-27024175(+)$1	266	134	141	17.8852
GAGAAGG	chr8:94752512-94752787(-)$1	275	6	13	14.5245
AAGGAGG	chr8:94747717-94747931(-)$1	214	16	23	13.7868
GAGAAGG	chr16:87735210-87735459(-)$1	249	65	72	14.5245
GAGGAGG	chr19:49376915-49377175(+)$1	260	85	92	17.8852
GAGGAGG	chr10:120801690-120801927(-)$1	237	44	51	17.8852
GAGGUGG	chr11:62292083-62292350(-)$1	267	167	174	13.3770
GAGCAGG	chr6:7231983-7232234(+)$1	251	12	19	13.9508
GAGGAGG	chr11:71726054-71726329(-)$1	275	247	254	17.8852
GAAGAGG	chr9:133759968-133760194(+)$1	226	0	7	14.0327
GAGGAGG	chr8:94746586-94746831(-)$1	245	38	45	17.8852
GAGGAGG	chr8:94746820-94747051(-)$1	231	186	193	17.8852
GAGGAGA	chr9:134350836-134351116(+)$1	280	172	179	13.5409
GAGGUGG	chr16:2814224-2814480(+)$1	256	22	29	13.3770
AAGGAGG	chr1:245026814-245027072(-)$1	258	3	10	13.7868
AAGGAGG	chr11:62284902-62285124(-)$1	222	109	116	13.7868
GAGAAGG	chr22:36690053-36690345(-)$1	292	16	23	14.5245
GAGGAGC	chr16:89346897-89347146(-)$1	249	29	36	13.7049
GACGAGG	chr16:89348258-89348499(-)$1	241	107	114	14.1967
GAUGAGG	chr9:134350659-134350947(+)$1	288	13	20	14.0327

#otherMatches

#Struct PSSM
]bb22bb	chr22:36697528-36697774(-)$1	246	93	100	17.8852
ccc]ddd	chr5:71489866-71490112(+)$1	246	112	119	13.7049
88888dd	chr5:71492048-71492300(+)$1	252	185	192	17.8852
b[cccnn	chr8:144999533-144999816(-)$1	283	70	77	17.8852
ggggg22	chr5:71491920-71492210(+)$1	290	106	113	17.8852
::::FFF	chr5:71491431-71491669(+)$1	238	82	89	14.5245
mma]ccc	chr11:71724492-71724737(-)$1	245	62	69	17.8852
EEEEE:d	chr16:89348867-89349114(-)$1	247	20	27	14.0327
KKAKKCC	chr16:89348127-89348411(-)$1	284	19	26	14.1967
ddd333d	chr7:1132258-1132480(-)$1	222	147	154	14.0327
d::::ff	chr16:89346985-89347212(-)$1	227	65	72	14.1967
::ggggg	chr8:94747774-94748010(-)$1	236	95	102	13.7868
ddd22dd	chr8:94752685-94752943(-)$1	258	162	169	14.5245
:::::cc	chr16:89350039-89350291(-)$1	252	2	9	17.8852
ttttttb	chr16:89350125-89350439(-)$1	314	150	157	17.8852
yyyyccc	chr16:89348751-89348973(-)$1	222	59	66	14.5245
hhhhh##	chr11:62285356-62285642(-)$1	286	183	190	17.8852
cccc]dd	chr16:89347792-89348081(-)$1	289	277	284	17.8852
ffff]dd	chr12:133353498-133353772(-)$1	274	53	60	13.7049
bb%%%%%	chr11:71724630-71724873(-)$1	243	15	22	17.8852
e::::ff	chr16:89347086-89347350(-)$1	264	203	210	14.1967
ddd]ddd	chr11:62291007-62291233(-)$1	226	194	201	14.5245
::::DDD	chr1:16256388-16256638(+)$1	250	160	167	14.0327
]ccc22d	chr11:62494204-62494470(-)$1	266	64	71	17.8852
f:FFFFF	chr1:16259147-16259392(+)$1	245	101	108	13.9508
:::dddd	chr22:20050697-20050991(+)$1	294	11	18	14.0327
GGG::dd	chr8:41791119-41791403(-)$1	284	52	59	14.1967
DDDYYAY	chr11:71725471-71725735(-)$1	264	172	179	13.7049
=======	chr9:134349890-134350156(+)$1	266	17	24	13.5409
ccc"""b	chr9:133760237-133760484(+)$1	247	64	71	17.8852
d[cccpp	chr13:108518035-108518327(-)$1	292	3	10	13.7049
tttttcc	chr16:89348634-89348889(-)$1	255	44	51	14.5245
ccc::cc	chr16:89350264-89350500(-)$1	236	211	218	17.8852
:ddddcc	chr11:71724803-71725026(-)$1	223	168	175	17.8852
FCCC{GG	chr12:125396249-125396514(-)$1	265	13	20	13.3770
{DDDD{C	chr19:55558594-55558900(+)$1	306	45	52	13.7049
b]dddd:	chr2:96957398-96957640(-)$1	242	154	161	17.8852
:ccc[bb	chr8:94745836-94746125(-)$1	289	52	59	17.8852
2bb]eee	chr19:49377468-49377731(+)$1	263	213	220	17.8852
HHHHHHH	chr17:20799074-20799334(+)$1	260	248	255	13.7049
e666666	chr12:6691268-6691482(-)$1	214	115	122	14.5245
d!!gggg	chr17:27023909-27024175(+)$1	266	134	141	17.8852
F::IIII	chr8:94752512-94752787(-)$1	275	6	13	14.5245
{GGGGGG	chr8:94747717-94747931(-)$1	214	16	23	13.7868
""aqqqq	chr16:87735210-87735459(-)$1	249	65	72	14.5245
&&&&a[b	chr19:49376915-49377175(+)$1	260	85	92	17.8852
[ddddbb	chr10:120801690-120801927(-)$1	237	44	51	17.8852
e55555g	chr11:62292083-62292350(-)$1	267	167	174	13.3770
EEEEEGG	chr6:7231983-7232234(+)$1	251	12	19	13.9508
mma22cc	chr11:71726054-71726329(-)$1	275	247	254	17.8852
::::::H	chr9:133759968-133760194(+)$1	226	0	7	14.0327
mccc22a	chr8:94746586-94746831(-)$1	245	38	45	17.8852
ggggmmm	chr8:94746820-94747051(-)$1	231	186	193	17.8852
eee22dd	chr9:134350836-134351116(+)$1	280	172	179	13.5409
dd[bb&&	chr16:2814224-2814480(+)$1	256	22	29	13.3770
::bb[ff	chr1:245026814-245027072(-)$1	258	3	10	13.7868
333dddd	chr11:62284902-62285124(-)$1	222	109	116	13.7868
f####cc	chr22:36690053-36690345(-)$1	292	16	23	14.5245
FFFFMMM	chr16:89346897-89347146(-)$1	249	29	36	13.7049
b4444dd	chr16:89348258-89348499(-)$1	241	107	114	14.1967
LLDDDDK	chr9:134350659-134350947(+)$1	288	13	20	14.0327

#DB
.))..))	chr22:36697528-36697774(-)$1	1	93	100	17.8852
))).)))	chr5:71489866-71490112(+)$1	1	112	119	13.7049
.....))	chr5:71492048-71492300(+)$1	1	185	192	17.8852
(.(((..	chr8:144999533-144999816(-)$1	1	70	77	17.8852
)))))..	chr5:71491920-71492210(+)$1	1	106	113	17.8852
....(((	chr5:71491431-71491669(+)$1	1	82	89	14.5245
..).)))	chr11:71724492-71724737(-)$1	1	62	69	17.8852
(((((.(	chr16:89348867-89349114(-)$1	1	20	27	14.0327
..(..((	chr16:89348127-89348411(-)$1	1	19	26	14.1967
)))...)	chr7:1132258-1132480(-)$1	1	147	154	14.0327
)....((	chr16:89346985-89347212(-)$1	1	65	72	14.1967
..(((((	chr8:94747774-94748010(-)$1	1	95	102	13.7868
)))..))	chr8:94752685-94752943(-)$1	1	162	169	14.5245
.....((	chr16:89350039-89350291(-)$1	1	2	9	17.8852
......)	chr16:89350125-89350439(-)$1	1	150	157	17.8852
....)))	chr16:89348751-89348973(-)$1	1	59	66	14.5245
(((((..	chr11:62285356-62285642(-)$1	1	183	190	17.8852
)))).))	chr16:89347792-89348081(-)$1	1	277	284	17.8852
)))).))	chr12:133353498-133353772(-)$1	1	53	60	13.7049
((.....	chr11:71724630-71724873(-)$1	1	15	22	17.8852
)....((	chr16:89347086-89347350(-)$1	1	203	210	14.1967
))).)))	chr11:62291007-62291233(-)$1	1	194	201	14.5245
....(((	chr1:16256388-16256638(+)$1	1	160	167	14.0327
.)))..)	chr11:62494204-62494470(-)$1	1	64	71	17.8852
).(((((	chr1:16259147-16259392(+)$1	1	101	108	13.9508
...((((	chr22:20050697-20050991(+)$1	1	11	18	14.0327
(((..((	chr8:41791119-41791403(-)$1	1	52	59	14.1967
)))..).	chr11:71725471-71725735(-)$1	1	172	179	13.7049
(((((((	chr9:134349890-134350156(+)$1	1	17	24	13.5409
(((...(	chr9:133760237-133760484(+)$1	1	64	71	17.8852
(.(((..	chr13:108518035-108518327(-)$1	1	3	10	13.7049
.....))	chr16:89348634-89348889(-)$1	1	44	51	14.5245
)))..((	chr16:89350264-89350500(-)$1	1	211	218	17.8852
.((((((	chr11:71724803-71725026(-)$1	1	168	175	17.8852
((((.((	chr12:125396249-125396514(-)$1	1	13	20	13.3770
.((((.(	chr19:55558594-55558900(+)$1	1	45	52	13.7049
).)))).	chr2:96957398-96957640(-)$1	1	154	161	17.8852
.(((.((	chr8:94745836-94746125(-)$1	1	52	59	17.8852
.)).)))	chr19:49377468-49377731(+)$1	1	213	220	17.8852
)))))))	chr17:20799074-20799334(+)$1	1	248	255	13.7049
)......	chr12:6691268-6691482(-)$1	1	115	122	14.5245
(..((((	chr17:27023909-27024175(+)$1	1	134	141	17.8852
(..((((	chr8:94752512-94752787(-)$1	1	6	13	14.5245
.((((((	chr8:94747717-94747931(-)$1	1	16	23	13.7868
..(....	chr16:87735210-87735459(-)$1	1	65	72	14.5245
....(.(	chr19:49376915-49377175(+)$1	1	85	92	17.8852
.((((((	chr10:120801690-120801927(-)$1	1	44	51	17.8852
).....)	chr11:62292083-62292350(-)$1	1	167	174	13.3770
(((((((	chr6:7231983-7232234(+)$1	1	12	19	13.9508
..)..))	chr11:71726054-71726329(-)$1	1	247	254	17.8852
......(	chr9:133759968-133760194(+)$1	1	0	7	14.0327
.)))..)	chr8:94746586-94746831(-)$1	1	38	45	17.8852
((((...	chr8:94746820-94747051(-)$1	1	186	193	17.8852
)))..))	chr9:134350836-134351116(+)$1	1	172	179	13.5409
((.((..	chr16:2814224-2814480(+)$1	1	22	29	13.3770
..((.((	chr1:245026814-245027072(-)$1	1	3	10	13.7868
...))))	chr11:62284902-62285124(-)$1	1	109	116	13.7868
(....((	chr22:36690053-36690345(-)$1	1	16	23	14.5245
((((...	chr16:89346897-89347146(-)$1	1	29	36	13.7049
)....))	chr16:89348258-89348499(-)$1	1	107	114	14.1967
..((((.	chr9:134350659-134350947(+)$1	1	13	20	14.0327

#PSSM
G : 0.86	A : 0.06	C : 0.04	g : 0.01	
A : 0.98	a : 0.01	
G : 0.80	C : 0.08	A : 0.04	U : 0.04	g : 0.01	
G : 0.80	A : 0.14	C : 0.03	g : 0.01	
A : 0.93	U : 0.04	a : 0.01	
G : 0.98	g : 0.01	
G : 0.88	C : 0.06	A : 0.03	g : 0.01	

#score	943.4590163934431
#seq	61
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_UTR_m1_run2.nuc.txt

#NT
GGUGGAG	chr12:113616682-113616946(-)$1	264	154	161	13.7611
GCUGGGG	chr9:139757217-139757458(-)$1	241	158	165	13.0895
GGUGCGG	chr6:4062374-4062615(+)$1	241	61	68	13.1641
GGAgggg	chr22:24237030-24237266(+)$1	236	115	122	13.6119
GGUGGUG	chr12:56679688-56679967(-)$1	279	240	247	13.6119
GGUAGGG	chr20:10639267-10639531(-)$1	264	11	18	13.3134
GGUGGCG	chr2:214149186-214149485(+)$1	299	125	132	13.6119
GGUGGGG	chr2:32264341-32264724(-)$1	383	62	69	17.5671
GGUGGGG	chr19:42364727-42364967(+)$1	240	48	55	17.5671
GGAGGGG	chr2:24307459-24307702(-)$1	243	82	89	13.6119
GGUGGGG	chr1:230824206-230824505(+)$1	299	132	139	17.5671
GGUGGGG	chr1:19216469-19216761(-)$1	292	11	18	17.5671
GCUGGGG	chr22:46752567-46752910(+)$1	343	224	231	13.0895
GGUggcg	chr19:57351840-57352051(-)$1	211	21	28	13.6119
GGUGGGG	chr16:2802747-2802976(+)$1	229	128	135	17.5671
GGUGUGG	chr17:1665307-1665542(+)$1	235	74	81	13.2388
GGUGGGG	chr7:1474575-1474840(-)$1	265	206	213	17.5671
ggugggg	chr16:30798184-30798457(-)$1	273	245	252	17.5671
GGUGAGG	chr17:73150251-73150555(-)$1	304	118	125	13.0895
GGUGGUG	chr19:10789764-10790007(+)$1	243	131	138	13.6119
GGUGGGG	chr11:66384426-66384644(+)$1	218	201	208	17.5671
GGUGGUG	chrX:153668419-153668632(+)$1	213	81	88	13.6119
GAUGGGG	chr12:57522711-57522954(+)$1	243	173	180	12.9402
GGUGGGG	chr7:44608388-44608765(-)$1	377	49	56	17.5671
GGUUGGG	chr12:98987599-98987879(+)$1	280	77	84	13.2388
GGUGGGG	chr17:56160914-56161184(+)$1	270	140	147	17.5671
GGUAggg	chr14:103988015-103988257(-)$1	242	102	109	13.3134
GGUGGGU	chr1:206592589-206592896(+)$1	307	205	212	13.0149
GGUUGGG	chr11:65314258-65314559(-)$1	301	50	57	13.2388
GGUGGGG	chr19:2040051-2040328(-)$1	277	39	46	17.5671
GGUGGAG	chr19:14673231-14673525(+)$1	294	104	111	13.7611
GGUAGGG	chr19:45417966-45418241(+)$1	275	107	114	13.3134
GGUGGGG	chr17:73221823-73222061(+)$1	238	125	132	17.5671
GGAGGGG	chr11:57256701-57257035(-)$1	334	96	103	13.6119
GGUCGGG	chr16:4897087-4897360(-)$1	273	12	19	13.2388
ggagggg	chr6:86352574-86352788(-)$1	214	41	48	13.6119
GGUGGGC	chr19:35499898-35500137(+)$1	239	41	48	13.0149
GGUGGGG	chr5:174905536-174905811(+)$1	275	137	144	17.5671
GGAGGGG	chr17:73809193-73809465(+)$1	272	188	195	13.6119
UGUGGGG	chr20:2448112-2448355(-)$1	243	116	123	13.0895
GGUGGCG	chr2:24307073-24307397(-)$1	324	299	306	13.6119
GGUGGGG	chr5:177631678-177631953(+)$1	275	23	30	17.5671
GGUGCGG	chr20:54967666-54967910(+)$1	244	128	135	13.1641
CGUGGGG	chr22:32016864-32017082(-)$1	218	117	124	13.1641
GGUGGGG	chr19:1089337-1089571(-)$1	234	128	135	17.5671
GGUGUGG	chr16:72142383-72142633(+)$1	250	194	201	13.2388
GCUGGGG	chr17:39846350-39846580(+)$1	230	159	166	13.0895
GGUGGAG	chr8:134296363-134296592(-)$1	229	85	92	13.7611
GGUCGGG	chr17:38573884-38574145(-)$1	261	27	34	13.2388
GGUGGGG	chr12:6643822-6644114(+)$1	292	79	86	17.5671
GGUGGGG	chr14:69257096-69257340(-)$1	244	209	216	17.5671
GGUGGGG	chr9:139904841-139905163(-)$1	322	111	118	17.5671
GGUGGGG	chr12:110939644-110939962(-)$1	318	148	155	17.5671
AGUGGGG	chr19:10505925-10506142(-)$1	217	35	42	13.2388
GGUGGGU	chr19:49120554-49120804(-)$1	250	2	9	13.0149
AGUGGGG	chr17:4619380-4619600(+)$1	220	138	145	13.2388
GGUGGGC	chr17:80016512-80016760(-)$1	248	148	155	13.0149
ggugugg	chr16:3727562-3727808(-)$1	246	32	39	13.2388
GGUGGAG	chr22:38363064-38363312(+)$1	248	59	66	13.7611
GGCGGGG	chr7:150065929-150066146(+)$1	217	13	20	13.3134
GGAGGGG	chr4:38665979-38666242(+)$1	263	188	195	13.6119
CGUGGGG	chr19:14628809-14629078(-)$1	269	230	237	13.1641
GGUGGAG	chr8:82633302-82633566(-)$1	264	82	89	13.7611
AGUGGGG	chr10:135113353-135113631(-)$1	278	193	200	13.2388
ggcgggg	chr19:18264001-18264241(+)$1	240	0	7	13.3134
GGUGGGG	chr1:1326167-1326411(-)$1	244	128	135	17.5671

#otherMatches

#Struct PSSM
ffff]ee	chr11:67821380-67821682(-)$1	302	89	96	17.5671
idddd[a	chr12:113616682-113616946(-)$1	264	154	161	13.7611
cc]ccc]	chr9:139757217-139757458(-)$1	241	158	165	13.0895
uuuuuee	chr6:4062374-4062615(+)$1	241	61	68	13.1641
d333ddd	chr22:24237030-24237266(+)$1	236	115	122	13.6119
hhhhhhp	chr12:56679688-56679967(-)$1	279	240	247	13.6119
GGGFFFF	chr20:10639267-10639531(-)$1	264	11	18	13.3134
]a]dddd	chr2:214149186-214149485(+)$1	299	125	132	13.6119
]a]bb]c	chr2:32264341-32264724(-)$1	383	62	69	17.5671
[cccccc	chr19:42364727-42364967(+)$1	240	48	55	17.5671
EEEEDDD	chr2:24307459-24307702(-)$1	243	82	89	13.6119
ffffff!	chr1:230824206-230824505(+)$1	299	132	139	17.5671
hhhhhhh	chr1:19216469-19216761(-)$1	292	11	18	17.5671
ccc]ddd	chr22:46752567-46752910(+)$1	343	224	231	13.0895
""ggggg	chr19:57351840-57352051(-)$1	211	21	28	13.6119
::::::h	chr16:2802747-2802976(+)$1	229	128	135	17.5671
FFFFFhh	chr17:1665307-1665542(+)$1	235	74	81	13.2388
g[=====	chr7:1474575-1474840(-)$1	265	206	213	17.5671
555ccc]	chr16:30798184-30798457(-)$1	273	245	252	17.5671
333dddd	chr17:73150251-73150555(-)$1	304	118	125	13.0895
GGccc[d	chr19:10789764-10790007(+)$1	243	131	138	13.6119
HHH||||	chr11:66384426-66384644(+)$1	218	201	208	17.5671
dd[eeee	chrX:153668419-153668632(+)$1	213	81	88	13.6119
cceeeee	chr12:57522711-57522954(+)$1	243	173	180	12.9402
gggggdd	chr7:44608388-44608765(-)$1	377	49	56	17.5671
iiiiiii	chr12:98987599-98987879(+)$1	280	77	84	13.2388
ggggggD	chr17:56160914-56161184(+)$1	270	140	147	17.5671
JJJJJJJ	chr14:103988015-103988257(-)$1	242	102	109	13.3134
CCCeeee	chr1:206592589-206592896(+)$1	307	205	212	13.0149
D{EEEEE	chr11:65314258-65314559(-)$1	301	50	57	13.2388
hhhhhhh	chr19:2040051-2040328(-)$1	277	39	46	17.5671
"cccttt	chr19:14673231-14673525(+)$1	294	104	111	13.7611
iiiiiii	chr19:45417966-45418241(+)$1	275	107	114	13.3134
ddddEEE	chr17:73221823-73222061(+)$1	238	125	132	17.5671
"""bbcc	chr11:57256701-57257035(-)$1	334	96	103	13.6119
na]ccce	chr16:4897087-4897360(-)$1	273	12	19	13.2388
"""dddd	chr6:86352574-86352788(-)$1	214	41	48	13.6119
'''ffff	chr19:35499898-35500137(+)$1	239	41	48	13.0149
cccdddd	chr5:174905536-174905811(+)$1	275	137	144	17.5671
###ccc"	chr17:73809193-73809465(+)$1	272	188	195	13.6119
ccc]fff	chr20:2448112-2448355(-)$1	243	116	123	13.0895
cccccce	chr2:24307073-24307397(-)$1	324	299	306	13.6119
pppeeee	chr5:177631678-177631953(+)$1	275	23	30	17.5671
hhh]ddd	chr20:54967666-54967910(+)$1	244	128	135	13.1641
b]ddddg	chr22:32016864-32017082(-)$1	218	117	124	13.1641
bb[dddd	chr19:1089337-1089571(-)$1	234	128	135	17.5671
ccc22bb	chr16:72142383-72142633(+)$1	250	194	201	13.2388
hh]ffff	chr17:39846350-39846580(+)$1	230	159	166	13.0895
BCCC:::	chr8:134296363-134296592(-)$1	229	85	92	13.7611
c:JJJJJ	chr17:38573884-38574145(-)$1	261	27	34	13.2388
cddddii	chr12:6643822-6644114(+)$1	292	79	86	17.5671
a]ggggg	chr14:69257096-69257340(-)$1	244	209	216	17.5671
fff333d	chr9:139904841-139905163(-)$1	322	111	118	17.5671
33a]ddd	chr12:110939644-110939962(-)$1	318	148	155	17.5671
E{CCC:i	chr19:10505925-10506142(-)$1	217	35	42	13.2388
::CCCa!	chr19:49120554-49120804(-)$1	250	2	9	13.0149
??FFFFF	chr17:4619380-4619600(+)$1	220	138	145	13.2388
fffffff	chr17:80016512-80016760(-)$1	248	148	155	13.0149
8888888	chr16:3727562-3727808(-)$1	246	32	39	13.2388
ee]ccc]	chr22:38363064-38363312(+)$1	248	59	66	13.7611
[bblllb	chr7:150065929-150066146(+)$1	217	13	20	13.3134
hhhhhhh	chr4:38665979-38666242(+)$1	263	188	195	13.6119
:iiiiii	chr19:14628809-14629078(-)$1	269	230	237	13.1641
cccqqqq	chr8:82633302-82633566(-)$1	264	82	89	13.7611
[gggggg	chr10:135113353-135113631(-)$1	278	193	200	13.2388
:FFFFFF	chr19:18264001-18264241(+)$1	240	0	7	13.3134
nnnnccc	chr1:1326167-1326411(-)$1	244	128	135	17.5671

#DB
)))).))	chr11:67821380-67821682(-)$1	1	89	96	17.5671
(((((.(	chr12:113616682-113616946(-)$1	1	154	161	13.7611
)).))).	chr9:139757217-139757458(-)$1	1	158	165	13.0895
.....))	chr6:4062374-4062615(+)$1	1	61	68	13.1641
)...)))	chr22:24237030-24237266(+)$1	1	115	122	13.6119
((((((.	chr12:56679688-56679967(-)$1	1	240	247	13.6119
(((((((	chr20:10639267-10639531(-)$1	1	11	18	13.3134
.).))))	chr2:214149186-214149485(+)$1	1	125	132	13.6119
.).)).)	chr2:32264341-32264724(-)$1	1	62	69	17.5671
.((((((	chr19:42364727-42364967(+)$1	1	48	55	17.5671
(((((((	chr2:24307459-24307702(-)$1	1	82	89	13.6119
((((((.	chr1:230824206-230824505(+)$1	1	132	139	17.5671
(((((((	chr1:19216469-19216761(-)$1	1	11	18	17.5671
))).)))	chr22:46752567-46752910(+)$1	1	224	231	13.0895
..(((((	chr19:57351840-57352051(-)$1	1	21	28	13.6119
......(	chr16:2802747-2802976(+)$1	1	128	135	17.5671
(((((((	chr17:1665307-1665542(+)$1	1	74	81	13.2388
(.(((((	chr7:1474575-1474840(-)$1	1	206	213	17.5671
...))).	chr16:30798184-30798457(-)$1	1	245	252	17.5671
...))))	chr17:73150251-73150555(-)$1	1	118	125	13.0895
))(((.(	chr19:10789764-10790007(+)$1	1	131	138	13.6119
)))....	chr11:66384426-66384644(+)$1	1	201	208	17.5671
((.((((	chrX:153668419-153668632(+)$1	1	81	88	13.6119
)))))))	chr12:57522711-57522954(+)$1	1	173	180	12.9402
)))))))	chr7:44608388-44608765(-)$1	1	49	56	17.5671
(((((((	chr12:98987599-98987879(+)$1	1	77	84	13.2388
))))))(	chr17:56160914-56161184(+)$1	1	140	147	17.5671
(((((((	chr14:103988015-103988257(-)$1	1	102	109	13.3134
)))((((	chr1:206592589-206592896(+)$1	1	205	212	13.0149
(.(((((	chr11:65314258-65314559(-)$1	1	50	57	13.2388
(((((((	chr19:2040051-2040328(-)$1	1	39	46	17.5671
.(((...	chr19:14673231-14673525(+)$1	1	104	111	13.7611
(((((((	chr19:45417966-45418241(+)$1	1	107	114	13.3134
)))))))	chr17:73221823-73222061(+)$1	1	125	132	17.5671
...((((	chr11:57256701-57257035(-)$1	1	96	103	13.6119
.).)))(	chr16:4897087-4897360(-)$1	1	12	19	13.2388
...((((	chr6:86352574-86352788(-)$1	1	41	48	13.6119
...((((	chr19:35499898-35500137(+)$1	1	41	48	13.0149
)))((((	chr5:174905536-174905811(+)$1	1	137	144	17.5671
...(((.	chr17:73809193-73809465(+)$1	1	188	195	13.6119
))).)))	chr20:2448112-2448355(-)$1	1	116	123	13.0895
)))))))	chr2:24307073-24307397(-)$1	1	299	306	13.6119
...))))	chr5:177631678-177631953(+)$1	1	23	30	17.5671
))).)))	chr20:54967666-54967910(+)$1	1	128	135	13.1641
).))))(	chr22:32016864-32017082(-)$1	1	117	124	13.1641
((.((((	chr19:1089337-1089571(-)$1	1	128	135	17.5671
)))..))	chr16:72142383-72142633(+)$1	1	194	201	13.2388
)).))))	chr17:39846350-39846580(+)$1	1	159	166	13.0895
((((...	chr8:134296363-134296592(-)$1	1	85	92	13.7611
).(((((	chr17:38573884-38574145(-)$1	1	27	34	13.2388
(((((((	chr12:6643822-6644114(+)$1	1	79	86	17.5671
).)))))	chr14:69257096-69257340(-)$1	1	209	216	17.5671
)))...)	chr9:139904841-139905163(-)$1	1	111	118	17.5671
..).)))	chr12:110939644-110939962(-)$1	1	148	155	17.5671
(.(((.(	chr19:10505925-10506142(-)$1	1	35	42	13.2388
..((((.	chr19:49120554-49120804(-)$1	1	2	9	13.0149
..)))))	chr17:4619380-4619600(+)$1	1	138	145	13.2388
(((((((	chr17:80016512-80016760(-)$1	1	148	155	13.0149
.......	chr16:3727562-3727808(-)$1	1	32	39	13.2388
)).))).	chr22:38363064-38363312(+)$1	1	59	66	13.7611
.((...)	chr7:150065929-150066146(+)$1	1	13	20	13.3134
)))))))	chr4:38665979-38666242(+)$1	1	188	195	13.6119
.((((((	chr19:14628809-14629078(-)$1	1	230	237	13.1641
(((....	chr8:82633302-82633566(-)$1	1	82	89	13.7611
.((((((	chr10:135113353-135113631(-)$1	1	193	200	13.2388
.((((((	chr19:18264001-18264241(+)$1	1	0	7	13.3134
....)))	chr1:1326167-1326411(-)$1	1	128	135	17.5671

#PSSM
G : 0.85	g : 0.05	A : 0.04	C : 0.02	U : 0.01	
G : 0.88	g : 0.05	C : 0.04	A : 0.01	
U : 0.85	A : 0.07	u : 0.02	a : 0.01	C : 0.01	c : 0.01	
G : 0.80	g : 0.08	A : 0.04	U : 0.02	C : 0.02	
G : 0.82	g : 0.08	C : 0.02	U : 0.02	A : 0.01	u : 0.01	
G : 0.74	g : 0.08	A : 0.07	U : 0.04	C : 0.02	c : 0.01	
G : 0.83	g : 0.10	U : 0.02	C : 0.02	

#score	983.1194029850755
#seq	67
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_transcript_m3_run1.nuc.txt

#NT
AGCUUG	chr16:89836543-89836834(-)$1	291	67	73	9.5116
AGCUUG	chr12:6619530-6619766(+)$1	236	131	137	9.5116
agccuu	chr9:89037910-89038113(-)$1	203	80	86	9.3953
uGCUUU	chr20:62338329-62338606(-)$1	277	117	123	9.5697
CGCUUU	chr8:144668923-144669265(-)$1	342	117	123	9.5116
agcuug	chr11:62609011-62609212(-)$1	201	56	62	9.5116
AGCUUU	chr17:7809285-7809655(+)$1	370	65	71	13.3488
AGCUUG	chr5:27484896-27485120(+)$1	224	9	15	9.5116
AGCAUU	chr12:7076578-7076788(-)$1	210	159	165	9.5697
AGCUUA	chr2:234197358-234197569(+)$1	211	151	157	9.4534
UGCUUU	chr6:43745805-43746063(+)$1	258	43	49	9.5697
CGCUUU	chr18:47340403-47340607(+)$1	204	97	103	9.5116
AGAUUU	chr1:173835343-173835604(-)$1	261	124	130	9.2209
UGCUUU	chr2:97533543-97533808(-)$1	265	102	108	9.5697
AGCUCU	chr5:179047917-179048173(-)$1	256	48	54	9.5697
AGCUUG	chr12:6619577-6619795(+)$1	218	84	90	9.5116
AGCAUU	chr6:43495813-43496097(-)$1	284	126	132	9.5697
AGCUUA	chr2:234197310-234197522(+)$1	212	199	205	9.4534
agcucu	chr12:7052880-7053143(+)$1	263	107	113	9.5697
AGCUUA	chr2:234197369-234197587(+)$1	218	140	146	9.4534
AUCUUU	chr2:101889360-101889568(-)$1	208	1	7	9.2790
AACUUU	chr12:6619512-6619729(+)$1	217	10	16	9.3372
AGCUUA	chr2:234197411-234197624(+)$1	213	98	104	9.4534
AGUUUU	chr10:101996887-101997096(-)$1	209	71	77	9.3953
ACCUUU	chr12:6619325-6619541(+)$1	216	117	123	9.4534
AGUUUU	chr2:234184474-234184677(+)$1	203	156	162	9.3953
ugcuuu	chr7:53843822-53844051(+)$1	229	46	52	9.5697
agcguu	chr3:169437875-169438095(-)$1	220	105	111	9.3372
agauuu	chr17:41464606-41464815(-)$1	209	127	133	9.2209
agauuu	chr17:41464615-41464819(-)$1	204	131	137	9.2209
ACCUUU	chr12:6619414-6619623(+)$1	209	28	34	9.4534
AGUUUU	chr2:234184480-234184695(+)$1	215	150	156	9.3953
AGCUGU	chr11:93454610-93454820(+)$1	210	2	8	9.3953
accuuu	chr2:115177648-115177866(+)$1	218	64	70	9.4534
AGCUUU	chr14:95999657-95999868(-)$1	211	108	114	13.3488
agccuu	chr11:64914983-64915193(+)$1	210	81	87	9.3953
AUCUUU	chr2:101889405-101889608(-)$1	203	41	47	9.2790
agcguu	chr3:194935487-194935708(+)$1	221	119	125	9.3372
AACUUU	chr17:62496848-62497065(-)$1	217	94	100	9.3372
CGCUUU	chr3:169482296-169482516(-)$1	220	123	129	9.5116
AGCUUA	chr2:234197397-234197604(+)$1	207	112	118	9.4534
AGCAUU	chr12:7076561-7076778(-)$1	217	149	155	9.5697
AGCUGU	chr14:95999798-96000012(-)$1	214	152	158	9.3953
AGCUAU	chr7:98479369-98479571(+)$1	202	86	92	9.5697
AGUUUU	chr2:234184524-234184732(+)$1	208	106	112	9.3953
AGUUUU	chr10:101996870-101997087(-)$1	217	62	68	9.3953
AGUUUU	chr2:234184450-234184668(+)$1	218	180	186	9.3953
ACCUUU	chr12:6619429-6619648(+)$1	219	13	19	9.4534
AUCUUU	chr2:101889372-101889583(-)$1	211	16	22	9.2790
AGCUUU	chr14:95999614-95999823(-)$1	209	63	69	13.3488
AGCAUU	chr12:7076400-7076629(-)$1	229	0	6	9.5697
GGCUUU	chr9:123202121-123202413(-)$1	292	5	11	9.2209
AGCUAU	chr7:98479329-98479534(+)$1	205	126	132	9.5697
AACUUU	chr12:6619497-6619709(+)$1	212	25	31	9.3372
CGCUUU	chr18:47340407-47340620(+)$1	213	93	99	9.5116
AGCCUU	chr2:101889331-101889551(-)$1	220	9	15	9.3953
agccuu	chr3:127793874-127794116(-)$1	242	34	40	9.3953
AGCUCU	chr1:109642901-109643108(+)$1	207	146	152	9.5697
UGCUUU	chr12:46758252-46758491(-)$1	239	193	199	9.5697
AGCUAU	chr7:98479364-98479569(+)$1	205	91	97	9.5697
AGUUUU	chr16:70571859-70572073(+)$1	214	112	118	9.3953
AGCUAU	chr7:98479376-98479582(+)$1	206	79	85	9.5697
AGCUAU	chr7:98479293-98479497(+)$1	204	162	168	9.5697
AGCUUU	chr1:70697801-70698069(+)$1	268	15	21	13.3488
AGAUUU	chr1:28160824-28161048(+)$1	224	72	78	9.2209
AGCUUG	chr10:74885762-74885994(-)$1	232	121	127	9.5116
AGCUUG	chr3:169482718-169482930(-)$1	212	17	23	9.5116
AGCAUU	chr12:7076477-7076691(-)$1	214	62	68	9.5697
aacuuu	chr20:41119289-41119518(-)$1	229	26	32	9.3372
UGCUUU	chr3:169482678-169482906(-)$1	228	134	140	9.5697
AGCUUA	chr2:234197458-234197687(+)$1	229	51	57	9.4534
AGCUGU	chr14:95999820-96000023(-)$1	203	163	169	9.3953
AGCUAU	chr7:98479297-98479517(+)$1	220	158	164	9.5697
ACCUUU	chr12:6619371-6619583(+)$1	212	71	77	9.4534
AGCUCU	chr17:74308988-74309253(-)$1	265	32	38	9.5697
AGCUCU	chr2:85770652-85770913(+)$1	261	56	62	9.5697
AGCAUU	chr12:7076492-7076711(-)$1	219	82	88	9.5697
accuuu	chr3:73160100-73160342(+)$1	242	53	59	9.4534
agcuuu	chr12:120730885-120731102(-)$1	217	62	68	13.3488
CGCUUU	chr7:22896156-22896406(+)$1	250	205	211	9.5116
cgcuuu	chr10:97872484-97872707(+)$1	223	24	30	9.5116
UGCUUU	chr4:1976346-1976592(+)$1	246	162	168	9.5697
AGCUCU	chr19:49605899-49606149(+)$1	250	44	50	9.5697
agcuuu	chr12:120730878-120731085(-)$1	207	45	51	13.3488
AGCAUU	chr12:7076595-7076803(-)$1	208	174	180	9.5697

#otherMatches

#Struct PSSM
33gggg	chr12:98115470-98115701(+)$1	231	114	120	9.3372
EEEE::	chr16:89836543-89836834(-)$1	291	67	73	9.5116
dddmmm	chr12:6619530-6619766(+)$1	236	131	137	9.5116
tccc33	chr9:89037910-89038113(-)$1	203	80	86	9.3953
hhhhhh	chr20:62338329-62338606(-)$1	277	117	123	9.5697
dddd!!	chr8:144668923-144669265(-)$1	342	117	123	9.5116
ddmmmm	chr11:62609011-62609212(-)$1	201	56	62	9.5116
hh####	chr17:7809285-7809655(+)$1	370	65	71	13.3488
hhhhh$	chr5:27484896-27485120(+)$1	224	9	15	9.5116
llleee	chr12:7076578-7076788(-)$1	210	159	165	9.5697
eeee22	chr2:234197358-234197569(+)$1	211	151	157	9.4534
J:ffff	chr6:43745805-43746063(+)$1	258	43	49	9.5697
ccc333	chr18:47340403-47340607(+)$1	204	97	103	9.5116
eeee$$	chr1:173835343-173835604(-)$1	261	124	130	9.2209
:bb"""	chr2:97533543-97533808(-)$1	265	102	108	9.5697
gg!!ff	chr5:179047917-179048173(-)$1	256	48	54	9.5697
ggg"""	chr12:6619577-6619795(+)$1	218	84	90	9.5116
::::::	chr6:43495813-43496097(-)$1	284	126	132	9.5697
CC::::	chr2:234197310-234197522(+)$1	212	199	205	9.4534
KCCC::	chr12:7052880-7053143(+)$1	263	107	113	9.5697
::::::	chr2:234197369-234197587(+)$1	218	140	146	9.4534
::::dd	chr2:101889360-101889568(-)$1	208	1	7	9.2790
::::::	chr12:6619512-6619729(+)$1	217	10	16	9.3372
ff"""d	chr2:234197411-234197624(+)$1	213	98	104	9.4534
rrrrrr	chr10:101996887-101997096(-)$1	209	71	77	9.3953
iiiiii	chr12:6619325-6619541(+)$1	216	117	123	9.4534
:eeeee	chr2:234184474-234184677(+)$1	203	156	162	9.3953
cDDDDJ	chr7:53843822-53844051(+)$1	229	46	52	9.5697
33gggg	chr3:169437875-169438095(-)$1	220	105	111	9.3372
cc6666	chr17:41464606-41464815(-)$1	209	127	133	9.2209
cc6666	chr17:41464615-41464819(-)$1	204	131	137	9.2209
iiiiii	chr12:6619414-6619623(+)$1	209	28	34	9.4534
:eeeee	chr2:234184480-234184695(+)$1	215	150	156	9.3953
HHHHHH	chr11:93454610-93454820(+)$1	210	2	8	9.3953
:bbmmm	chr2:115177648-115177866(+)$1	218	64	70	9.4534
gggg]a	chr14:95999657-95999868(-)$1	211	108	114	13.3488
bfffff	chr11:64914983-64915193(+)$1	210	81	87	9.3953
!fffff	chr2:101889405-101889608(-)$1	203	41	47	9.2790
33gggg	chr3:194935487-194935708(+)$1	221	119	125	9.3372
:::ggg	chr17:62496848-62497065(-)$1	217	94	100	9.3372
d22hhh	chr3:169482296-169482516(-)$1	220	123	129	9.5116
hh"""d	chr2:234197397-234197604(+)$1	207	112	118	9.4534
eeeee]	chr12:7076561-7076778(-)$1	217	149	155	9.5697
ccc]a3	chr14:95999798-96000012(-)$1	214	152	158	9.3953
:::ddd	chr7:98479369-98479571(+)$1	202	86	92	9.5697
[cccll	chr2:234184524-234184732(+)$1	208	106	112	9.3953
rrrrrr	chr10:101996870-101997087(-)$1	217	62	68	9.3953
JJJJ}C	chr2:234184450-234184668(+)$1	218	180	186	9.3953
EEEEEB	chr12:6619429-6619648(+)$1	219	13	19	9.4534
:fffff	chr2:101889372-101889583(-)$1	211	16	22	9.2790
EEELLL	chr14:95999614-95999823(-)$1	209	63	69	13.3488
:BB:cc	chr12:7076400-7076629(-)$1	229	0	6	9.5697
GGGG{C	chr9:123202121-123202413(-)$1	292	5	11	9.2209
ff:ddd	chr7:98479329-98479534(+)$1	205	126	132	9.5697
C:CCC{	chr12:6619497-6619709(+)$1	212	25	31	9.3372
ccc333	chr18:47340407-47340620(+)$1	213	93	99	9.5116
:GGGGG	chr2:101889331-101889551(-)$1	220	9	15	9.3953
ddddll	chr3:127793874-127794116(-)$1	242	34	40	9.3953
cc####	chr1:109642901-109643108(+)$1	207	146	152	9.5697
dd!!dd	chr12:46758252-46758491(-)$1	239	193	199	9.5697
:::ddd	chr7:98479364-98479569(+)$1	205	91	97	9.5697
gggggg	chr16:70571859-70572073(+)$1	214	112	118	9.3953
:::ddd	chr7:98479376-98479582(+)$1	206	79	85	9.5697
EEEddd	chr7:98479293-98479497(+)$1	204	162	168	9.5697
:cccrr	chr1:70697801-70698069(+)$1	268	15	21	13.3488
Eddddp	chr1:28160824-28161048(+)$1	224	72	78	9.2209
%bb!!d	chr10:74885762-74885994(-)$1	232	121	127	9.5116
JJJKKB	chr3:169482718-169482930(-)$1	212	17	23	9.5116
llleee	chr12:7076477-7076691(-)$1	214	62	68	9.5697
::eeee	chr20:41119289-41119518(-)$1	229	26	32	9.3372
[fffff	chr3:169482678-169482906(-)$1	228	134	140	9.5697
gg"""d	chr2:234197458-234197687(+)$1	229	51	57	9.4534
ccc]a3	chr14:95999820-96000023(-)$1	203	163	169	9.3953
ff:ddd	chr7:98479297-98479517(+)$1	220	158	164	9.5697
iiiiii	chr12:6619371-6619583(+)$1	212	71	77	9.4534
GEEEEE	chr17:74308988-74309253(-)$1	265	32	38	9.5697
JJ::::	chr2:85770652-85770913(+)$1	261	56	62	9.5697
llleee	chr12:7076492-7076711(-)$1	219	82	88	9.5697
e[ccco	chr3:73160100-73160342(+)$1	242	53	59	9.4534
xxffff	chr12:120730885-120731102(-)$1	217	62	68	13.3488
qqqqqb	chr7:22896156-22896406(+)$1	250	205	211	9.5116
dbbmmm	chr10:97872484-97872707(+)$1	223	24	30	9.5116
ffff44	chr4:1976346-1976592(+)$1	246	162	168	9.5697
22eeee	chr19:49605899-49606149(+)$1	250	44	50	9.5697
ssssff	chr12:120730878-120731085(-)$1	207	45	51	13.3488
llleee	chr12:7076595-7076803(-)$1	208	174	180	9.5697

#DB
..))))	chr12:98115470-98115701(+)$1	1	114	120	9.3372
((((..	chr16:89836543-89836834(-)$1	1	67	73	9.5116
(((...	chr12:6619530-6619766(+)$1	1	131	137	9.5116
.)))..	chr9:89037910-89038113(-)$1	1	80	86	9.3953
))))))	chr20:62338329-62338606(-)$1	1	117	123	9.5697
((((..	chr8:144668923-144669265(-)$1	1	117	123	9.5116
((....	chr11:62609011-62609212(-)$1	1	56	62	9.5116
((....	chr17:7809285-7809655(+)$1	1	65	71	13.3488
(((((.	chr5:27484896-27485120(+)$1	1	9	15	9.5116
...)))	chr12:7076578-7076788(-)$1	1	159	165	9.5697
))))..	chr2:234197358-234197569(+)$1	1	151	157	9.4534
(.((((	chr6:43745805-43746063(+)$1	1	43	49	9.5697
)))...	chr18:47340403-47340607(+)$1	1	97	103	9.5116
((((..	chr1:173835343-173835604(-)$1	1	124	130	9.2209
.((...	chr2:97533543-97533808(-)$1	1	102	108	9.5697
((..((	chr5:179047917-179048173(-)$1	1	48	54	9.5697
(((...	chr12:6619577-6619795(+)$1	1	84	90	9.5116
......	chr6:43495813-43496097(-)$1	1	126	132	9.5697
))....	chr2:234197310-234197522(+)$1	1	199	205	9.4534
.(((..	chr12:7052880-7053143(+)$1	1	107	113	9.5697
......	chr2:234197369-234197587(+)$1	1	140	146	9.4534
....((	chr2:101889360-101889568(-)$1	1	1	7	9.2790
......	chr12:6619512-6619729(+)$1	1	10	16	9.3372
((...(	chr2:234197411-234197624(+)$1	1	98	104	9.4534
......	chr10:101996887-101997096(-)$1	1	71	77	9.3953
((((((	chr12:6619325-6619541(+)$1	1	117	123	9.4534
.(((((	chr2:234184474-234184677(+)$1	1	156	162	9.3953
)(((((	chr7:53843822-53844051(+)$1	1	46	52	9.5697
..))))	chr3:169437875-169438095(-)$1	1	105	111	9.3372
))....	chr17:41464606-41464815(-)$1	1	127	133	9.2209
))....	chr17:41464615-41464819(-)$1	1	131	137	9.2209
((((((	chr12:6619414-6619623(+)$1	1	28	34	9.4534
.(((((	chr2:234184480-234184695(+)$1	1	150	156	9.3953
((((((	chr11:93454610-93454820(+)$1	1	2	8	9.3953
.((...	chr2:115177648-115177866(+)$1	1	64	70	9.4534
)))).)	chr14:95999657-95999868(-)$1	1	108	114	13.3488
))))))	chr11:64914983-64915193(+)$1	1	81	87	9.3953
.(((((	chr2:101889405-101889608(-)$1	1	41	47	9.2790
..))))	chr3:194935487-194935708(+)$1	1	119	125	9.3372
...(((	chr17:62496848-62497065(-)$1	1	94	100	9.3372
)..)))	chr3:169482296-169482516(-)$1	1	123	129	9.5116
((...(	chr2:234197397-234197604(+)$1	1	112	118	9.4534
))))).	chr12:7076561-7076778(-)$1	1	149	155	9.5697
))).).	chr14:95999798-96000012(-)$1	1	152	158	9.3953
...(((	chr7:98479369-98479571(+)$1	1	86	92	9.5697
.(((..	chr2:234184524-234184732(+)$1	1	106	112	9.3953
......	chr10:101996870-101997087(-)$1	1	62	68	9.3953
)))).)	chr2:234184450-234184668(+)$1	1	180	186	9.3953
((((((	chr12:6619429-6619648(+)$1	1	13	19	9.4534
.(((((	chr2:101889372-101889583(-)$1	1	16	22	9.2790
(((...	chr14:95999614-95999823(-)$1	1	63	69	13.3488
.((.((	chr12:7076400-7076629(-)$1	1	0	6	9.5697
((((.(	chr9:123202121-123202413(-)$1	1	5	11	9.2209
)).(((	chr7:98479329-98479534(+)$1	1	126	132	9.5697
(.(((.	chr12:6619497-6619709(+)$1	1	25	31	9.3372
)))...	chr18:47340407-47340620(+)$1	1	93	99	9.5116
.(((((	chr2:101889331-101889551(-)$1	1	9	15	9.3953
((((..	chr3:127793874-127794116(-)$1	1	34	40	9.3953
((....	chr1:109642901-109643108(+)$1	1	146	152	9.5697
((..((	chr12:46758252-46758491(-)$1	1	193	199	9.5697
...(((	chr7:98479364-98479569(+)$1	1	91	97	9.5697
))))))	chr16:70571859-70572073(+)$1	1	112	118	9.3953
...(((	chr7:98479376-98479582(+)$1	1	79	85	9.5697
)))(((	chr7:98479293-98479497(+)$1	1	162	168	9.5697
.(((..	chr1:70697801-70698069(+)$1	1	15	21	13.3488
(((((.	chr1:28160824-28161048(+)$1	1	72	78	9.2209
.((..(	chr10:74885762-74885994(-)$1	1	121	127	9.5116
(((..(	chr3:169482718-169482930(-)$1	1	17	23	9.5116
...)))	chr12:7076477-7076691(-)$1	1	62	68	9.5697
..((((	chr20:41119289-41119518(-)$1	1	26	32	9.3372
.(((((	chr3:169482678-169482906(-)$1	1	134	140	9.5697
((...(	chr2:234197458-234197687(+)$1	1	51	57	9.4534
))).).	chr14:95999820-96000023(-)$1	1	163	169	9.3953
)).(((	chr7:98479297-98479517(+)$1	1	158	164	9.5697
((((((	chr12:6619371-6619583(+)$1	1	71	77	9.4534
((((((	chr17:74308988-74309253(-)$1	1	32	38	9.5697
((....	chr2:85770652-85770913(+)$1	1	56	62	9.5697
...)))	chr12:7076492-7076711(-)$1	1	82	88	9.5697
(.(((.	chr3:73160100-73160342(+)$1	1	53	59	9.4534
..))))	chr12:120730885-120731102(-)$1	1	62	68	13.3488
.....)	chr7:22896156-22896406(+)$1	1	205	211	9.5116
)((...	chr10:97872484-97872707(+)$1	1	24	30	9.5116
))))..	chr4:1976346-1976592(+)$1	1	162	168	9.5697
..))))	chr19:49605899-49606149(+)$1	1	44	50	9.5697
....))	chr12:120730878-120731085(-)$1	1	45	51	13.3488
...)))	chr12:7076595-7076803(-)$1	1	174	180	9.5697

#PSSM
A : 0.66	a : 0.17	C : 0.05	U : 0.05	u : 0.02	G : 0.01	c : 0.01	
G : 0.68	g : 0.16	C : 0.04	U : 0.03	A : 0.03	c : 0.02	a : 0.01	
C : 0.69	c : 0.17	U : 0.08	A : 0.02	a : 0.02	
U : 0.70	u : 0.12	A : 0.08	g : 0.03	c : 0.03	C : 0.01	
U : 0.63	u : 0.18	A : 0.06	C : 0.05	G : 0.03	c : 0.01	
U : 0.66	u : 0.18	G : 0.06	A : 0.06	g : 0.01	

#score	836.837209302326
#seq	86
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_transcript_m3_run1.nuc.txt

#NT
ugugg	chr2:97559946-97560198(-)$1	252	11	16	15.0000
UGUGG	chr1:228285804-228286039(+)$1	235	42	47	15.0000
UGUGG	chr7:151845069-151845315(-)$1	246	34	39	15.0000
UGUGG	chr9:125642399-125642640(-)$1	241	121	126	15.0000
ugugG	chr11:126146120-126146361(+)$1	241	86	91	15.0000
ugugg	chr19:46701103-46701356(-)$1	253	116	121	15.0000
UGUGG	chr20:26189854-26190071(-)$1	217	68	73	15.0000
UGUGG	chr20:26189723-26189972(-)$1	249	173	178	15.0000
UGUGG	chrX:118921228-118921462(-)$1	234	45	50	15.0000
UGUGG	chr9:136217654-136217870(+)$1	216	87	92	15.0000
UGUGG	chr5:111497178-111497415(+)$1	237	41	46	15.0000
UGUGG	chr9:126029939-126030190(-)$1	251	46	51	15.0000
UGUGG	chr9:33952672-33952926(-)$1	254	94	99	15.0000
UGUGG	chr1:63833241-63833466(+)$1	225	158	163	15.0000
UGUGG	chr20:26189871-26190123(-)$1	252	120	125	15.0000
UGUGG	chr9:136217620-136217854(+)$1	234	121	126	15.0000
UGUGG	chr2:133015223-133015439(-)$1	216	172	177	15.0000
UGUGG	chr16:89555648-89555907(-)$1	259	59	64	15.0000
UGUGG	chrX:149108412-149108658(+)$1	246	73	78	15.0000
UGUGG	chr20:26189693-26189913(-)$1	220	114	119	15.0000
UGUGG	chr19:13262240-13262471(+)$1	231	19	24	15.0000
UGUGG	chr2:133015207-133015423(-)$1	216	156	161	15.0000
UGUGG	chr13:92788009-92788232(+)$1	223	177	182	15.0000
UGUGG	chr20:26189713-26189920(-)$1	207	121	126	15.0000
UGUGG	chr5:134259775-134260015(+)$1	240	63	68	15.0000
UGUGG	chr19:8550671-8550944(+)$1	273	149	154	15.0000
uGUGG	chr11:17097263-17097497(-)$1	234	37	42	15.0000
ugugg	chr16:447647-447876(+)$1	229	21	26	15.0000
ugugg	chr2:97559862-97560146(-)$1	284	19	24	15.0000
UGUGG	chr1:173835351-173835567(-)$1	216	137	142	15.0000
UGUGG	chr1:109289280-109289510(+)$1	230	119	124	15.0000
UGUGG	chr4:83816905-83817175(-)$1	270	155	160	15.0000
UGUGG	chr2:133015127-133015371(-)$1	244	104	109	15.0000
UGUGG	chrM:14361-14591(-)$1	230	24	29	15.0000
UGUGG	chr10:135272188-135272430(+)$1	242	63	68	15.0000
ugugg	chr8:142425774-142426031(+)$1	257	67	72	15.0000
UGUGG	chr1:145442444-145442652(+)$1	208	37	42	15.0000
UGUGG	chr16:72821492-72821755(-)$1	263	59	64	15.0000

#otherMatches

#Struct PSSM
ccddd	chr1:173835344-173835551(-)$1	207	121	126	15.0000
:::dd	chr2:97559946-97560198(-)$1	252	11	16	15.0000
e]ccc	chr1:228285804-228286039(+)$1	235	42	47	15.0000
:bb[d	chr7:151845069-151845315(-)$1	246	34	39	15.0000
ggggg	chr9:125642399-125642640(-)$1	241	121	126	15.0000
eeeee	chr11:126146120-126146361(+)$1	241	86	91	15.0000
mmeee	chr19:46701103-46701356(-)$1	253	116	121	15.0000
ggggg	chr20:26189854-26190071(-)$1	217	68	73	15.0000
:::CC	chr20:26189723-26189972(-)$1	249	173	178	15.0000
qqqqi	chrX:118921228-118921462(-)$1	234	45	50	15.0000
mmmcc	chr9:136217654-136217870(+)$1	216	87	92	15.0000
hh]cc	chr5:111497178-111497415(+)$1	237	41	46	15.0000
ddd##	chr9:126029939-126030190(-)$1	251	46	51	15.0000
ffffb	chr9:33952672-33952926(-)$1	254	94	99	15.0000
CCC}A	chr1:63833241-63833466(+)$1	225	158	163	15.0000
RRRRR	chr20:26189871-26190123(-)$1	252	120	125	15.0000
mmmcc	chr9:136217620-136217854(+)$1	234	121	126	15.0000
e]ggg	chr2:133015223-133015439(-)$1	216	172	177	15.0000
CCC{E	chr16:89555648-89555907(-)$1	259	59	64	15.0000
c[a[b	chrX:149108412-149108658(+)$1	246	73	78	15.0000
a[a""	chr20:26189693-26189913(-)$1	220	114	119	15.0000
FFFFF	chr19:13262240-13262471(+)$1	231	19	24	15.0000
[eeee	chr2:133015207-133015423(-)$1	216	156	161	15.0000
D}BB~	chr13:92788009-92788232(+)$1	223	177	182	15.0000
a[a""	chr20:26189713-26189920(-)$1	207	121	126	15.0000
ee[cc	chr5:134259775-134260015(+)$1	240	63	68	15.0000
ggggg	chr19:8550671-8550944(+)$1	273	149	154	15.0000
dd]dd	chr11:17097263-17097497(-)$1	234	37	42	15.0000
::::D	chr16:447647-447876(+)$1	229	21	26	15.0000
CCKKF	chr2:97559862-97560146(-)$1	284	19	24	15.0000
ccddd	chr1:173835351-173835567(-)$1	216	137	142	15.0000
a]aff	chr1:109289280-109289510(+)$1	230	119	124	15.0000
]eeee	chr4:83816905-83817175(-)$1	270	155	160	15.0000
:eeee	chr2:133015127-133015371(-)$1	244	104	109	15.0000
FFFFF	chrM:14361-14591(-)$1	230	24	29	15.0000
c22==	chr10:135272188-135272430(+)$1	242	63	68	15.0000
A{FFF	chr8:142425774-142426031(+)$1	257	67	72	15.0000
]dddd	chr1:145442444-145442652(+)$1	208	37	42	15.0000
FFFFC	chr16:72821492-72821755(-)$1	263	59	64	15.0000

#DB
(((((	chr1:173835344-173835551(-)$1	1	121	126	15.0000
...((	chr2:97559946-97560198(-)$1	1	11	16	15.0000
).)))	chr1:228285804-228286039(+)$1	1	42	47	15.0000
.((.(	chr7:151845069-151845315(-)$1	1	34	39	15.0000
)))))	chr9:125642399-125642640(-)$1	1	121	126	15.0000
(((((	chr11:126146120-126146361(+)$1	1	86	91	15.0000
..)))	chr19:46701103-46701356(-)$1	1	116	121	15.0000
)))))	chr20:26189854-26190071(-)$1	1	68	73	15.0000
...))	chr20:26189723-26189972(-)$1	1	173	178	15.0000
....)	chrX:118921228-118921462(-)$1	1	45	50	15.0000
...))	chr9:136217654-136217870(+)$1	1	87	92	15.0000
)).))	chr5:111497178-111497415(+)$1	1	41	46	15.0000
(((..	chr9:126029939-126030190(-)$1	1	46	51	15.0000
(((((	chr9:33952672-33952926(-)$1	1	94	99	15.0000
))).)	chr1:63833241-63833466(+)$1	1	158	163	15.0000
.....	chr20:26189871-26190123(-)$1	1	120	125	15.0000
...))	chr9:136217620-136217854(+)$1	1	121	126	15.0000
).)))	chr2:133015223-133015439(-)$1	1	172	177	15.0000
(((.(	chr16:89555648-89555907(-)$1	1	59	64	15.0000
(.(.(	chrX:149108412-149108658(+)$1	1	73	78	15.0000
(.(..	chr20:26189693-26189913(-)$1	1	114	119	15.0000
(((((	chr19:13262240-13262471(+)$1	1	19	24	15.0000
.((((	chr2:133015207-133015423(-)$1	1	156	161	15.0000
).)).	chr13:92788009-92788232(+)$1	1	177	182	15.0000
(.(..	chr20:26189713-26189920(-)$1	1	121	126	15.0000
((.((	chr5:134259775-134260015(+)$1	1	63	68	15.0000
(((((	chr19:8550671-8550944(+)$1	1	149	154	15.0000
)).))	chr11:17097263-17097497(-)$1	1	37	42	15.0000
....(	chr16:447647-447876(+)$1	1	21	26	15.0000
((..(	chr2:97559862-97560146(-)$1	1	19	24	15.0000
(((((	chr1:173835351-173835567(-)$1	1	137	142	15.0000
).)((	chr1:109289280-109289510(+)$1	1	119	124	15.0000
.))))	chr4:83816905-83817175(-)$1	1	155	160	15.0000
.((((	chr2:133015127-133015371(-)$1	1	104	109	15.0000
(((((	chrM:14361-14591(-)$1	1	24	29	15.0000
)..))	chr10:135272188-135272430(+)$1	1	63	68	15.0000
(.(((	chr8:142425774-142426031(+)$1	1	67	72	15.0000
.))))	chr1:145442444-145442652(+)$1	1	37	42	15.0000
(((((	chr16:72821492-72821755(-)$1	1	59	64	15.0000

#PSSM
U : 0.82	u : 0.17	
G : 0.84	g : 0.15	
U : 0.84	u : 0.15	
G : 0.84	g : 0.15	
G : 0.87	g : 0.12	

#score	585.0000000000001
#seq	39
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_CDS_m1_run1.nuc.txt

#NT
ggcggaggcggagg	chr7:100136789-100137104(+)$1	315	236	250	22.0909
GGCGGGGGUUGGGG	chr6:32157584-32157846(-)$1	262	44	58	26.7272
GGCGGGGGGAGAGG	chr1:226032899-226033164(-)$1	265	96	110	22.1818
GGCGGCGGCGGCGG	chr9:126692066-126692363(-)$1	297	15	29	21.9090
ggcggggcaggcgg	chr17:48784795-48785064(-)$1	269	5	19	21.7272
GGUUGGGGCGGGGG	chr19:47987247-47987562(-)$1	315	103	117	22.5454
GGCGGGGUUGGGGA	chr5:176980956-176981271(-)$1	315	90	104	21.6363
ggcgggcucggggg	chr10:21823472-21823702(+)$1	230	19	33	21.1818
GGCGGGGGUGGGGG	chr16:4744319-4744559(+)$1	240	95	109	30.1818
gggguggguggggg	chr17:37618164-37618425(+)$1	261	90	104	22.9090
GGUGGGGGGGGUGG	chr20:2819569-2819833(-)$1	264	87	101	22.4545
ggcggggguggggg	chr17:7232365-7232629(-)$1	264	55	69	30.1818
gccggggcuggggg	chr16:69419556-69419888(-)$1	332	235	249	22.4545
GACGGGGGGCGGGG	chr4:129208548-129208816(-)$1	268	14	28	22.1818
GUUGGGGGAGGGGG	chr2:208576444-208576724(+)$1	280	96	110	22.0909
GGCAGGGGGCGGGG	chr4:129208761-129209058(-)$1	297	71	85	22.2727
ggcgggggccgggg	chr6:32157427-32157684(-)$1	257	25	39	26.3636
ggccggggcgggcg	chr4:52709261-52709620(+)$1	359	314	328	21.2727
GGGGAGGGUGGGGG	chr6:33179571-33179822(+)$1	251	88	102	22.7272
GGUCGGGGUCGGGG	chr13:114144716-114145035(-)$1	319	86	100	20.7272
ggcggaggcggagg	chr7:100136904-100137149(+)$1	245	121	135	22.0909
gguggagguggggg	chr7:766838-767092(-)$1	254	81	95	23.5454
GGCGGGCGUGGGGC	chr2:27255763-27256135(+)$1	372	134	148	21.6363
gauggggguggggg	chr15:90172464-90172739(+)$1	275	82	96	23.2727
GGCGGGGAGGGAGG	chr16:29819095-29819399(+)$1	304	128	142	21.5454
GUCGGGGGUGGUGG	chr15:79165198-79165489(+)$1	291	117	131	22.3636
ggccggggaggggg	chr14:23790667-23790915(+)$1	248	112	126	25.4545
GACGGGGGGCGGGG	chr4:129208690-129208934(-)$1	244	132	146	22.1818
ggccggggaggggg	chr14:23790715-23790987(+)$1	272	64	78	25.4545
GGAGGGGGCGGCGG	chr22:31741469-31741715(-)$1	246	111	125	22.7272
GGCGGGCGGAGGGG	chrX:41193782-41194030(+)$1	248	17	31	21.5454
GGGGUGGGUGGGGG	chr6:33179049-33179291(+)$1	242	93	107	22.9090
ggcggcggcgggcg	chr18:8609577-8609890(+)$1	313	106	120	20.9999
ggaggggguggggg	chr2:54197719-54197994(-)$1	275	43	57	27.1818
ggcgggggcggggc	chr19:39440213-39440592(-)$1	379	32	46	25.0000
GGAGGGAGUGGGGG	chr17:7476811-7477140(+)$1	329	308	322	22.9999
GGCUGGGGUGUGGG	chr22:37904896-37905160(-)$1	264	10	24	21.6363
ggaggggguggggg	chr2:54197794-54198050(-)$1	256	99	113	27.1818
GCCGUGGGUGGGGG	chr16:88725000-88725283(-)$1	283	64	78	21.7272
GGGGGAGGUGGGGG	chr17:58469199-58469450(-)$1	251	28	42	23.5454
gggcgggcuggggg	chr11:6238797-6239070(-)$1	273	106	120	20.0909
ggccggggaggggg	chr14:23790612-23790850(+)$1	238	167	181	25.4545
GGCGGCGGCCGGgg	chr10:103454217-103454465(-)$1	248	73	87	22.5454
GGCGGGGGCUGGGG	chr20:35177510-35177776(-)$1	266	90	104	25.9090
GGCGGGAGGCGGGG	chr16:30537578-30537851(-)$1	273	23	37	22.0000
ggcggggcaggcgg	chr17:48784864-48785161(-)$1	297	102	116	21.7272
GGCGGGAGGAGGGG	chr22:37415720-37416003(+)$1	283	101	115	21.5454
GGGAGGGGUGGGGG	chr20:33872188-33872480(-)$1	292	1	15	23.3636
ggcggaggcggagg	chr7:100136949-100137244(+)$1	295	76	90	22.0909
GGCGGGGGGGUGGG	chrX:48858485-48858754(-)$1	269	91	105	24.5454
GUCGGGGGUGGGGG	chr1:156347907-156348179(+)$1	272	47	61	26.1818
ggcggggcgcgggg	chr6:34856961-34857326(+)$1	365	26	40	22.5454
GGCGGGGCAGGGGC	chr14:24911341-24911620(-)$1	279	119	133	20.9999
ggcggcggagggag	chr8:30669812-30670093(-)$1	281	45	59	20.5454

#otherMatches

#Struct PSSM
a]a]a]eeeee]cc	chr19:36504885-36505229(-)$1	344	101	115	22.5454
""a[eeeeeppppp	chr7:100136789-100137104(+)$1	315	236	250	22.0909
!bb[ggggggg!!b	chr6:32157584-32157846(-)$1	262	44	58	26.7272
DDBBDDDD::gggg	chr1:226032899-226033164(-)$1	265	96	110	22.1818
KBB::bb[a[bb!!	chr9:126692066-126692363(-)$1	297	15	29	21.9090
{BB{DDDD::dddd	chr17:48784795-48785064(-)$1	269	5	19	21.7272
""ccc[cccmmmmc	chr19:47987247-47987562(-)$1	315	103	117	22.5454
D{AKKCCCFFFFFF	chr5:176980956-176981271(-)$1	315	90	104	21.6363
llcccddddfffff	chr10:21823472-21823702(+)$1	230	19	33	21.1818
:::::eeeee!!cc	chr16:4744319-4744559(+)$1	240	95	109	30.1818
========]eeeee	chr17:37618164-37618425(+)$1	261	90	104	22.9090
JJJJJJJJJJKKA{	chr20:2819569-2819833(-)$1	264	87	101	22.4545
cbb[eeeeemmmme	chr17:7232365-7232629(-)$1	264	55	69	30.1818
CCC}GGGGGGGHHH	chr16:69419556-69419888(-)$1	332	235	249	22.4545
B{DDDDKKFFFFFF	chr4:129208548-129208816(-)$1	268	14	28	22.1818
pppppppbb]bb]g	chr2:208576444-208576724(+)$1	280	96	110	22.0909
333==========:	chr4:129208761-129209058(-)$1	297	71	85	22.2727
cccmmmmcccbbff	chr6:32157427-32157684(-)$1	257	25	39	26.3636
dd22dddd]bbccc	chr4:52709261-52709620(+)$1	359	314	328	21.2727
gggg[dddd!!ccc	chr6:33179571-33179822(+)$1	251	88	102	22.7272
ddd]dddd]ccc]g	chr13:114144716-114145035(-)$1	319	86	100	20.7272
ccc"""ccc"""cc	chr7:100136904-100137149(+)$1	245	121	135	22.0909
dddd[dddd"""ff	chr7:766838-767092(-)$1	254	81	95	23.5454
CCEEEEE{EEEEEb	chr2:27255763-27256135(+)$1	372	134	148	21.6363
ALLLGGGGGGG{BB	chr15:90172464-90172739(+)$1	275	82	96	23.2727
ddd[dddd!!eeee	chr16:29819095-29819399(+)$1	304	128	142	21.5454
$$$$$ggggggg##	chr15:79165198-79165489(+)$1	291	117	131	22.3636
mmbb]a666666ff	chr14:23790667-23790915(+)$1	248	112	126	25.4545
h]bb4444bb22cc	chr4:129208690-129208934(-)$1	244	132	146	22.1818
LLFFFFFF{CCC{B	chr14:23790715-23790987(+)$1	272	64	78	25.4545
CKKCCCcccmmmmc	chr22:31741469-31741715(-)$1	246	111	125	22.7272
DDALLLDDDD{DDD	chrX:41193782-41194030(+)$1	248	17	31	21.5454
DDDD{BB{GGGGGG	chr6:33179049-33179291(+)$1	242	93	107	22.9090
:eeeee!!bb!!cc	chr18:8609577-8609890(+)$1	313	106	120	20.9999
KBB:ccc[a[eeee	chr2:54197719-54197994(-)$1	275	43	57	27.1818
llbb333ccc]ddd	chr19:39440213-39440592(-)$1	379	32	46	25.0000
E|||||||JJJJJJ	chr17:7476811-7477140(+)$1	329	308	322	22.9999
iiiiiiii[bb"""	chr22:37904896-37905160(-)$1	264	10	24	21.6363
c"""ccc[a[eeee	chr2:54197794-54198050(-)$1	256	99	113	27.1818
BBBB{CCC{EEEEE	chr16:88725000-88725283(-)$1	283	64	78	21.7272
g::bb[dddd!!dd	chr17:58469199-58469450(-)$1	251	28	42	23.5454
=======[a[eeee	chr11:6238797-6239070(-)$1	273	106	120	20.0909
mmbb]a666666ff	chr14:23790612-23790850(+)$1	238	167	181	25.4545
cccJJJJJJJJJJJ	chr10:103454217-103454465(-)$1	248	73	87	22.5454
ddddbb[ggggggg	chr20:35177510-35177776(-)$1	266	90	104	25.9090
eddddbbeeeee[b	chr16:30537578-30537851(-)$1	273	23	37	22.0000
dddttttttttttt	chr17:48784864-48785161(-)$1	297	102	116	21.7272
gggggdddd]eeee	chr22:37415720-37416003(+)$1	283	101	115	21.5454
CCC{A{IIIIIIII	chr20:33872188-33872480(-)$1	292	1	15	23.3636
$$$$ggggggg[ee	chr7:100136949-100137244(+)$1	295	76	90	22.0909
FFFYYJJJJJJJJJ	chrX:48858485-48858754(-)$1	269	91	105	24.5454
DDD{HHHHHHHHii	chr1:156347907-156348179(+)$1	272	47	61	26.1818
iiiiiiiiBB:a!!	chr6:34856961-34857326(+)$1	365	26	40	22.5454
cc[dddd!!dddd#	chr14:24911341-24911620(-)$1	279	119	133	20.9999
dddccc"""ccc[a	chr8:30669812-30670093(-)$1	281	45	59	20.5454

#DB
).).).))))).))	chr19:36504885-36505229(-)$1	1	101	115	22.5454
..(.(((((.....	chr7:100136789-100137104(+)$1	1	236	250	22.0909
.((.(((((((..(	chr6:32157584-32157846(-)$1	1	44	58	26.7272
((((((((..((((	chr1:226032899-226033164(-)$1	1	96	110	22.1818
.((..((.(.((..	chr9:126692066-126692363(-)$1	1	15	29	21.9090
.((.((((..((((	chr17:48784795-48785064(-)$1	1	5	19	21.7272
..(((.(((....)	chr19:47987247-47987562(-)$1	1	103	117	22.5454
(.(..(((((((((	chr5:176980956-176981271(-)$1	1	90	104	21.6363
..)))))))(((((	chr10:21823472-21823702(+)$1	1	19	33	21.1818
.....(((((..((	chr16:4744319-4744559(+)$1	1	95	109	30.1818
)))))))).)))))	chr17:37618164-37618425(+)$1	1	90	104	22.9090
((((((((((..(.	chr20:2819569-2819833(-)$1	1	87	101	22.4545
)((.(((((....)	chr17:7232365-7232629(-)$1	1	55	69	30.1818
))).))))))))))	chr16:69419556-69419888(-)$1	1	235	249	22.4545
(.((((..((((((	chr4:129208548-129208816(-)$1	1	14	28	22.1818
.......)).)).)	chr2:208576444-208576724(+)$1	1	96	110	22.0909
...)))))))))).	chr4:129208761-129209058(-)$1	1	71	85	22.2727
(((....)))))))	chr6:32157427-32157684(-)$1	1	25	39	26.3636
))..)))).))(((	chr4:52709261-52709620(+)$1	1	314	328	21.2727
((((.((((..(((	chr6:33179571-33179822(+)$1	1	88	102	22.7272
))).)))).))).)	chr13:114144716-114145035(-)$1	1	86	100	20.7272
(((...(((...((	chr7:100136904-100137149(+)$1	1	121	135	22.0909
((((.((((...((	chr7:766838-767092(-)$1	1	81	95	23.5454
(((((((.((((((	chr2:27255763-27256135(+)$1	1	134	148	21.6363
(...(((((((.((	chr15:90172464-90172739(+)$1	1	82	96	23.2727
(((.((((..((((	chr16:29819095-29819399(+)$1	1	128	142	21.5454
.....(((((((..	chr15:79165198-79165489(+)$1	1	117	131	22.3636
..)).)......))	chr14:23790667-23790915(+)$1	1	112	126	25.4545
).))....))..))	chr4:129208690-129208934(-)$1	1	132	146	22.1818
..((((((.(((.(	chr14:23790715-23790987(+)$1	1	64	78	25.4545
(..((((((....)	chr22:31741469-31741715(-)$1	1	111	125	22.7272
(((...((((.(((	chrX:41193782-41194030(+)$1	1	17	31	21.5454
((((.((.((((((	chr6:33179049-33179291(+)$1	1	93	107	22.9090
.(((((..((..((	chr18:8609577-8609890(+)$1	1	106	120	20.9999
.((.(((.(.((((	chr2:54197719-54197994(-)$1	1	43	57	27.1818
..))...))).)))	chr19:39440213-39440592(-)$1	1	32	46	25.0000
).......))))))	chr17:7476811-7477140(+)$1	1	308	322	22.9999
((((((((.((...	chr22:37904896-37905160(-)$1	1	10	24	21.6363
(...(((.(.((((	chr2:54197794-54198050(-)$1	1	99	113	27.1818
((((.(((.(((((	chr16:88725000-88725283(-)$1	1	64	78	21.7272
)..((.((((..((	chr17:58469199-58469450(-)$1	1	28	42	23.5454
(((((((.(.((((	chr11:6238797-6239070(-)$1	1	106	120	20.0909
..)).)......))	chr14:23790612-23790850(+)$1	1	167	181	25.4545
)))(((((((((((	chr10:103454217-103454465(-)$1	1	73	87	22.5454
((((((.(((((((	chr20:35177510-35177776(-)$1	1	90	104	25.9090
((((((((((((.(	chr16:30537578-30537851(-)$1	1	23	37	22.0000
(((...........	chr17:48784864-48785161(-)$1	1	102	116	21.7272
))))))))).))))	chr22:37415720-37416003(+)$1	1	101	115	21.5454
(((.(.((((((((	chr20:33872188-33872480(-)$1	1	1	15	23.3636
....(((((((.((	chr7:100136949-100137244(+)$1	1	76	90	22.0909
)))..)))))))))	chrX:48858485-48858754(-)$1	1	91	105	24.5454
(((.((((((((((	chr1:156347907-156348179(+)$1	1	47	61	26.1818
))))))))((.(..	chr6:34856961-34857326(+)$1	1	26	40	22.5454
((.((((..((((.	chr14:24911341-24911620(-)$1	1	119	133	20.9999
((((((...(((.(	chr8:30669812-30670093(-)$1	1	45	59	20.5454

#PSSM
G : 0.58	g : 0.41	
G : 0.47	g : 0.38	U : 0.05	A : 0.03	c : 0.01	a : 0.01	C : 0.01	
C : 0.38	c : 0.30	U : 0.07	G : 0.07	A : 0.05	g : 0.03	u : 0.03	a : 0.03	
G : 0.49	g : 0.32	c : 0.09	U : 0.03	A : 0.03	C : 0.01	
G : 0.52	g : 0.40	U : 0.03	u : 0.01	A : 0.01	
G : 0.52	g : 0.30	a : 0.07	C : 0.03	c : 0.03	A : 0.01	
G : 0.49	g : 0.40	A : 0.05	C : 0.03	c : 0.01	
G : 0.52	g : 0.30	c : 0.09	U : 0.01	u : 0.01	A : 0.01	C : 0.01	
U : 0.25	G : 0.18	c : 0.14	u : 0.14	a : 0.10	C : 0.09	A : 0.05	g : 0.01	
g : 0.38	G : 0.36	C : 0.10	U : 0.05	A : 0.05	c : 0.03	
G : 0.54	g : 0.41	U : 0.03	
G : 0.47	g : 0.32	a : 0.05	A : 0.03	C : 0.03	c : 0.03	U : 0.03	
G : 0.56	g : 0.38	c : 0.03	a : 0.01	
G : 0.50	g : 0.41	C : 0.03	A : 0.01	c : 0.01	

#score	1272.9090909090905
#seq	55
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_transcript_m1_run2.nuc.txt

#NT
auuu	chr4:151339866-151340130(-)$1	264	29	33	11.9999
AUUU	chr7:38785830-38786121(-)$1	291	125	129	11.9999
auuu	chr1:53363391-53363691(-)$1	300	98	102	11.9999
AUUU	chr17:2212737-2213010(+)$1	273	12	16	11.9999
AUUU	chr6:17962492-17962752(-)$1	260	64	68	11.9999
auuu	chr1:32577048-32577343(+)$1	295	91	95	11.9999
auuu	chr10:65009025-65009280(-)$1	255	58	62	11.9999
auuu	chr12:46225302-46225603(+)$1	301	19	23	11.9999
AUUU	chr22:36190813-36191055(-)$1	242	95	99	11.9999
AUUU	chr17:49052242-49052484(-)$1	242	149	153	11.9999
auuu	chr16:47226365-47226644(-)$1	279	28	32	11.9999
AUUU	chr16:50615721-50615927(+)$1	206	52	56	11.9999
AUUU	chr15:100357575-100357869(+)$1	294	114	118	11.9999
AUUU	chr10:105770378-105770671(+)$1	293	108	112	11.9999
AUUU	chr7:127381531-127381890(+)$1	359	207	211	11.9999
auuu	chr22:28297886-28298152(-)$1	266	46	50	11.9999
AUUU	chr2:55521834-55522194(-)$1	360	26	30	11.9999
AUUU	chr7:137636083-137636346(-)$1	263	23	27	11.9999
AUUU	chr11:93481104-93481363(+)$1	259	102	106	11.9999
auuu	chr2:114504092-114504354(-)$1	262	9	13	11.9999
AUUU	chr6:2054216-2054483(-)$1	267	83	87	11.9999
AUUU	chr5:138631205-138631513(+)$1	308	23	27	11.9999
AUUU	chr6:35808437-35808747(-)$1	310	19	23	11.9999
AUUU	chrM:9247-9451(+)$1	204	61	65	11.9999
auuu	chr2:11432405-11432685(-)$1	280	1	5	11.9999
AUUU	chr7:140424876-140425187(-)$1	311	83	87	11.9999
AUUU	chr2:149484940-149485192(+)$1	252	1	5	11.9999
AUUU	chr1:67473473-67473744(-)$1	271	14	18	11.9999
AUUU	chr4:140314132-140314391(+)$1	259	38	42	11.9999
auuu	chr12:23795249-23795619(-)$1	370	20	24	11.9999
auuu	chr5:68672313-68672610(+)$1	297	7	11	11.9999
auuu	chr13:98821337-98821587(+)$1	250	45	49	11.9999
AUUU	chr2:114342860-114343115(+)$1	255	58	62	11.9999
AUUU	chr6:155603529-155603817(-)$1	288	161	165	11.9999
AUUU	chr9:104166840-104167077(+)$1	237	12	16	11.9999
auuu	chr2:128762081-128762363(-)$1	282	161	165	11.9999
AUUU	chr12:23998151-23998410(-)$1	259	23	27	11.9999
AUUU	chr6:71552781-71553070(+)$1	289	18	22	11.9999
AUUU	chr1:178860068-178860348(+)$1	280	72	76	11.9999
AUUU	chr6:1838729-1839006(-)$1	277	162	166	11.9999
auuu	chr14:90339185-90339425(-)$1	240	82	86	11.9999
auuu	chr3:119765074-119765338(-)$1	264	80	84	11.9999
auuu	chr8:17588142-17588453(-)$1	311	33	37	11.9999
AUUU	chr1:2336934-2337218(-)$1	284	71	75	11.9999
auuu	chr4:465191-465468(-)$1	277	95	99	11.9999
AUUU	chr15:100113677-100113936(+)$1	259	5	9	11.9999
auuu	chr12:70683540-70683790(+)$1	250	125	129	11.9999
AUUU	chr8:30353927-30354262(+)$1	335	67	71	11.9999
AUUU	chr11:58342436-58342710(-)$1	274	16	20	11.9999
AUUU	chr16:24970726-24970952(-)$1	226	100	104	11.9999
auuu	chr2:120727977-120728235(+)$1	258	35	39	11.9999
AUUU	chr11:107959921-107960248(+)$1	327	20	24	11.9999
AUUU	chr5:79947871-79948160(-)$1	289	22	26	11.9999
AUUU	chr2:122184699-122184997(-)$1	298	25	29	11.9999
auuu	chr17:38149147-38149402(+)$1	255	169	173	11.9999
AUUU	chr13:114196732-114197051(+)$1	319	144	148	11.9999
AUUU	chr6:108365427-108365807(-)$1	380	7	11	11.9999
AUUU	chr9:4840429-4840726(+)$1	297	47	51	11.9999
AUUU	chr2:214153363-214153617(+)$1	254	51	55	11.9999
auuu	chr11:129719752-129720031(+)$1	279	61	65	11.9999
AUUU	chr21:16378542-16378774(-)$1	232	2	6	11.9999
AUUU	chr2:42500766-42501040(+)$1	274	36	40	11.9999
auuu	chr8:117764377-117764696(-)$1	319	11	15	11.9999
auuu	chr4:4596952-4597213(+)$1	261	60	64	11.9999
AUUU	chr15:80176326-80176659(-)$1	333	36	40	11.9999
AUUU	chr6:24467492-24467793(-)$1	301	19	23	11.9999
AUUU	chr5:142759869-142760167(-)$1	298	269	273	11.9999
AUUU	chr3:167798982-167799270(-)$1	288	128	132	11.9999
AUUU	chr6:7581825-7582076(+)$1	251	88	92	11.9999
AUUU	chr2:169719155-169719452(-)$1	297	38	42	11.9999
AUUU	chr3:61004853-61005078(-)$1	225	76	80	11.9999
auuu	chr14:36323043-36323333(+)$1	290	25	29	11.9999
auuu	chr2:71372048-71372346(+)$1	298	3	7	11.9999
AUUU	chr10:369316-369560(-)$1	244	52	56	11.9999
AUUU	chr2:72409666-72409926(-)$1	260	136	140	11.9999
auuu	chr13:51218413-51218663(+)$1	250	78	82	11.9999
AUUU	chr3:179404400-179404677(+)$1	277	5	9	11.9999
auuu	chr2:148768908-148769182(-)$1	274	194	198	11.9999
auuu	chr4:74061524-74061735(-)$1	211	187	191	11.9999
AUUU	chr3:56654611-56654859(-)$1	248	92	96	11.9999
AUUU	chr18:71945766-71946074(-)$1	308	19	23	11.9999
auuu	chr10:62688207-62688523(-)$1	316	0	4	11.9999
AUUU	chr12:57794338-57794662(-)$1	324	38	42	11.9999
AUUU	chr12:81611899-81612123(+)$1	224	77	81	11.9999
AUUU	chr2:75914601-75914874(-)$1	273	84	88	11.9999
auuu	chr12:1473908-1474200(+)$1	292	127	131	11.9999
AUUU	chr3:98469129-98469386(+)$1	257	52	56	11.9999
auUU	chr1:162471384-162471659(+)$1	275	66	70	11.9999
AUUU	chr6:105429100-105429489(+)$1	389	212	216	11.9999

#otherMatches

#Struct PSSM
ddll	chr12:31460424-31460699(-)$1	275	136	140	11.9999
JJJJ	chr4:151339866-151340130(-)$1	264	29	33	11.9999
:::h	chr7:38785830-38786121(-)$1	291	125	129	11.9999
:::D	chr1:53363391-53363691(-)$1	300	98	102	11.9999
::::	chr17:2212737-2213010(+)$1	273	12	16	11.9999
xxxx	chr6:17962492-17962752(-)$1	260	64	68	11.9999
gg33	chr1:32577048-32577343(+)$1	295	91	95	11.9999
::::	chr10:65009025-65009280(-)$1	255	58	62	11.9999
D::e	chr12:46225302-46225603(+)$1	301	19	23	11.9999
b!!b	chr22:36190813-36191055(-)$1	242	95	99	11.9999
&hhh	chr17:49052242-49052484(-)$1	242	149	153	11.9999
HHHH	chr16:47226365-47226644(-)$1	279	28	32	11.9999
qqqq	chr16:50615721-50615927(+)$1	206	52	56	11.9999
eooo	chr15:100357575-100357869(+)$1	294	114	118	11.9999
::::	chr10:105770378-105770671(+)$1	293	108	112	11.9999
555c	chr7:127381531-127381890(+)$1	359	207	211	11.9999
QQHH	chr22:28297886-28298152(-)$1	266	46	50	11.9999
::::	chr2:55521834-55522194(-)$1	360	26	30	11.9999
qqqq	chr7:137636083-137636346(-)$1	263	23	27	11.9999
>>>g	chr11:93481104-93481363(+)$1	259	102	106	11.9999
::::	chr2:114504092-114504354(-)$1	262	9	13	11.9999
ffff	chr6:2054216-2054483(-)$1	267	83	87	11.9999
OOII	chr5:138631205-138631513(+)$1	308	23	27	11.9999
LBB{	chr6:35808437-35808747(-)$1	310	19	23	11.9999
e^^^	chrM:9247-9451(+)$1	204	61	65	11.9999
::::	chr2:11432405-11432685(-)$1	280	1	5	11.9999
::::	chr7:140424876-140425187(-)$1	311	83	87	11.9999
::::	chr2:149484940-149485192(+)$1	252	1	5	11.9999
gggg	chr1:67473473-67473744(-)$1	271	14	18	11.9999
iinn	chr4:140314132-140314391(+)$1	259	38	42	11.9999
f###	chr12:23795249-23795619(-)$1	370	20	24	11.9999
::::	chr5:68672313-68672610(+)$1	297	7	11	11.9999
^^^^	chr13:98821337-98821587(+)$1	250	45	49	11.9999
lllg	chr2:114342860-114343115(+)$1	255	58	62	11.9999
====	chr6:155603529-155603817(-)$1	288	161	165	11.9999
NNNF	chr9:104166840-104167077(+)$1	237	12	16	11.9999
66ee	chr2:128762081-128762363(-)$1	282	161	165	11.9999
hhhh	chr12:23998151-23998410(-)$1	259	23	27	11.9999
B{CC	chr6:71552781-71553070(+)$1	289	18	22	11.9999
====	chr1:178860068-178860348(+)$1	280	72	76	11.9999
HHHH	chr6:1838729-1839006(-)$1	277	162	166	11.9999
dmmm	chr14:90339185-90339425(-)$1	240	82	86	11.9999
::::	chr3:119765074-119765338(-)$1	264	80	84	11.9999
::::	chr8:17588142-17588453(-)$1	311	33	37	11.9999
::ff	chr1:2336934-2337218(-)$1	284	71	75	11.9999
qqee	chr4:465191-465468(-)$1	277	95	99	11.9999
:===	chr15:100113677-100113936(+)$1	259	5	9	11.9999
dddd	chr12:70683540-70683790(+)$1	250	125	129	11.9999
[eee	chr8:30353927-30354262(+)$1	335	67	71	11.9999
IIII	chr11:58342436-58342710(-)$1	274	16	20	11.9999
MDDD	chr16:24970726-24970952(-)$1	226	100	104	11.9999
::::	chr2:120727977-120728235(+)$1	258	35	39	11.9999
qqqf	chr11:107959921-107960248(+)$1	327	20	24	11.9999
::::	chr5:79947871-79948160(-)$1	289	22	26	11.9999
tttt	chr2:122184699-122184997(-)$1	298	25	29	11.9999
==="	chr17:38149147-38149402(+)$1	255	169	173	11.9999
dddd	chr13:114196732-114197051(+)$1	319	144	148	11.9999
tttt	chr6:108365427-108365807(-)$1	380	7	11	11.9999
pppp	chr9:4840429-4840726(+)$1	297	47	51	11.9999
d###	chr2:214153363-214153617(+)$1	254	51	55	11.9999
====	chr11:129719752-129720031(+)$1	279	61	65	11.9999
:::e	chr21:16378542-16378774(-)$1	232	2	6	11.9999
qqqq	chr2:42500766-42501040(+)$1	274	36	40	11.9999
&&&&	chr8:117764377-117764696(-)$1	319	11	15	11.9999
iiii	chr4:4596952-4597213(+)$1	261	60	64	11.9999
PPPP	chr15:80176326-80176659(-)$1	333	36	40	11.9999
WGGG	chr6:24467492-24467793(-)$1	301	19	23	11.9999
e333	chr5:142759869-142760167(-)$1	298	269	273	11.9999
::::	chr3:167798982-167799270(-)$1	288	128	132	11.9999
ooff	chr6:7581825-7582076(+)$1	251	88	92	11.9999
dd&&	chr2:169719155-169719452(-)$1	297	38	42	11.9999
====	chr3:61004853-61005078(-)$1	225	76	80	11.9999
::::	chr14:36323043-36323333(+)$1	290	25	29	11.9999
:GGG	chr2:71372048-71372346(+)$1	298	3	7	11.9999
::::	chr10:369316-369560(-)$1	244	52	56	11.9999
dnnn	chr2:72409666-72409926(-)$1	260	136	140	11.9999
hhhh	chr13:51218413-51218663(+)$1	250	78	82	11.9999
::::	chr3:179404400-179404677(+)$1	277	5	9	11.9999
/HHH	chr2:148768908-148769182(-)$1	274	194	198	11.9999
eeee	chr4:74061524-74061735(-)$1	211	187	191	11.9999
WWWW	chr3:56654611-56654859(-)$1	248	92	96	11.9999
EEEE	chr18:71945766-71946074(-)$1	308	19	23	11.9999
::::	chr10:62688207-62688523(-)$1	316	0	4	11.9999
pppp	chr12:57794338-57794662(-)$1	324	38	42	11.9999
:GGG	chr12:81611899-81612123(+)$1	224	77	81	11.9999
gggg	chr2:75914601-75914874(-)$1	273	84	88	11.9999
qqqq	chr12:1473908-1474200(+)$1	292	127	131	11.9999
JJJJ	chr3:98469129-98469386(+)$1	257	52	56	11.9999
gggg	chr1:162471384-162471659(+)$1	275	66	70	11.9999
GGGL	chr6:105429100-105429489(+)$1	389	212	216	11.9999

#DB
((..	chr12:31460424-31460699(-)$1	1	136	140	11.9999
((((	chr4:151339866-151340130(-)$1	1	29	33	11.9999
...(	chr7:38785830-38786121(-)$1	1	125	129	11.9999
...(	chr1:53363391-53363691(-)$1	1	98	102	11.9999
....	chr17:2212737-2213010(+)$1	1	12	16	11.9999
....	chr6:17962492-17962752(-)$1	1	64	68	11.9999
))..	chr1:32577048-32577343(+)$1	1	91	95	11.9999
....	chr10:65009025-65009280(-)$1	1	58	62	11.9999
(..(	chr12:46225302-46225603(+)$1	1	19	23	11.9999
(..(	chr22:36190813-36191055(-)$1	1	95	99	11.9999
.(((	chr17:49052242-49052484(-)$1	1	149	153	11.9999
((((	chr16:47226365-47226644(-)$1	1	28	32	11.9999
....	chr16:50615721-50615927(+)$1	1	52	56	11.9999
(...	chr15:100357575-100357869(+)$1	1	114	118	11.9999
....	chr10:105770378-105770671(+)$1	1	108	112	11.9999
...)	chr7:127381531-127381890(+)$1	1	207	211	11.9999
..((	chr22:28297886-28298152(-)$1	1	46	50	11.9999
....	chr2:55521834-55522194(-)$1	1	26	30	11.9999
....	chr7:137636083-137636346(-)$1	1	23	27	11.9999
...)	chr11:93481104-93481363(+)$1	1	102	106	11.9999
....	chr2:114504092-114504354(-)$1	1	9	13	11.9999
))))	chr6:2054216-2054483(-)$1	1	83	87	11.9999
..((	chr5:138631205-138631513(+)$1	1	23	27	11.9999
.((.	chr6:35808437-35808747(-)$1	1	19	23	11.9999
(...	chrM:9247-9451(+)$1	1	61	65	11.9999
....	chr2:11432405-11432685(-)$1	1	1	5	11.9999
....	chr7:140424876-140425187(-)$1	1	83	87	11.9999
....	chr2:149484940-149485192(+)$1	1	1	5	11.9999
((((	chr1:67473473-67473744(-)$1	1	14	18	11.9999
((..	chr4:140314132-140314391(+)$1	1	38	42	11.9999
(...	chr12:23795249-23795619(-)$1	1	20	24	11.9999
....	chr5:68672313-68672610(+)$1	1	7	11	11.9999
....	chr13:98821337-98821587(+)$1	1	45	49	11.9999
...)	chr2:114342860-114343115(+)$1	1	58	62	11.9999
((((	chr6:155603529-155603817(-)$1	1	161	165	11.9999
...(	chr9:104166840-104167077(+)$1	1	12	16	11.9999
..))	chr2:128762081-128762363(-)$1	1	161	165	11.9999
))))	chr12:23998151-23998410(-)$1	1	23	27	11.9999
(.((	chr6:71552781-71553070(+)$1	1	18	22	11.9999
((((	chr1:178860068-178860348(+)$1	1	72	76	11.9999
))))	chr6:1838729-1839006(-)$1	1	162	166	11.9999
(...	chr14:90339185-90339425(-)$1	1	82	86	11.9999
....	chr3:119765074-119765338(-)$1	1	80	84	11.9999
....	chr8:17588142-17588453(-)$1	1	33	37	11.9999
..((	chr1:2336934-2337218(-)$1	1	71	75	11.9999
..))	chr4:465191-465468(-)$1	1	95	99	11.9999
.(((	chr15:100113677-100113936(+)$1	1	5	9	11.9999
((((	chr12:70683540-70683790(+)$1	1	125	129	11.9999
.(((	chr8:30353927-30354262(+)$1	1	67	71	11.9999
((((	chr11:58342436-58342710(-)$1	1	16	20	11.9999
.(((	chr16:24970726-24970952(-)$1	1	100	104	11.9999
....	chr2:120727977-120728235(+)$1	1	35	39	11.9999
...)	chr11:107959921-107960248(+)$1	1	20	24	11.9999
....	chr5:79947871-79948160(-)$1	1	22	26	11.9999
....	chr2:122184699-122184997(-)$1	1	25	29	11.9999
(((.	chr17:38149147-38149402(+)$1	1	169	173	11.9999
))))	chr13:114196732-114197051(+)$1	1	144	148	11.9999
....	chr6:108365427-108365807(-)$1	1	7	11	11.9999
....	chr9:4840429-4840726(+)$1	1	47	51	11.9999
(...	chr2:214153363-214153617(+)$1	1	51	55	11.9999
((((	chr11:129719752-129720031(+)$1	1	61	65	11.9999
...(	chr21:16378542-16378774(-)$1	1	2	6	11.9999
....	chr2:42500766-42501040(+)$1	1	36	40	11.9999
....	chr8:117764377-117764696(-)$1	1	11	15	11.9999
))))	chr4:4596952-4597213(+)$1	1	60	64	11.9999
....	chr15:80176326-80176659(-)$1	1	36	40	11.9999
.(((	chr6:24467492-24467793(-)$1	1	19	23	11.9999
)...	chr5:142759869-142760167(-)$1	1	269	273	11.9999
....	chr3:167798982-167799270(-)$1	1	128	132	11.9999
..))	chr6:7581825-7582076(+)$1	1	88	92	11.9999
((..	chr2:169719155-169719452(-)$1	1	38	42	11.9999
))))	chr3:61004853-61005078(-)$1	1	76	80	11.9999
....	chr14:36323043-36323333(+)$1	1	25	29	11.9999
.(((	chr2:71372048-71372346(+)$1	1	3	7	11.9999
....	chr10:369316-369560(-)$1	1	52	56	11.9999
(...	chr2:72409666-72409926(-)$1	1	136	140	11.9999
))))	chr13:51218413-51218663(+)$1	1	78	82	11.9999
....	chr3:179404400-179404677(+)$1	1	5	9	11.9999
.)))	chr2:148768908-148769182(-)$1	1	194	198	11.9999
))))	chr4:74061524-74061735(-)$1	1	187	191	11.9999
....	chr3:56654611-56654859(-)$1	1	92	96	11.9999
((((	chr18:71945766-71946074(-)$1	1	19	23	11.9999
....	chr10:62688207-62688523(-)$1	1	0	4	11.9999
....	chr12:57794338-57794662(-)$1	1	38	42	11.9999
.(((	chr12:81611899-81612123(+)$1	1	77	81	11.9999
((((	chr2:75914601-75914874(-)$1	1	84	88	11.9999
....	chr12:1473908-1474200(+)$1	1	127	131	11.9999
((((	chr3:98469129-98469386(+)$1	1	52	56	11.9999
))))	chr1:162471384-162471659(+)$1	1	66	70	11.9999
(((.	chr6:105429100-105429489(+)$1	1	212	216	11.9999

#PSSM
A : 0.64	a : 0.35	
U : 0.64	u : 0.35	
U : 0.65	u : 0.34	
U : 0.65	u : 0.34	

#score	1079.9999999999998
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_UTR_m2_run1.nuc.txt

#NT
UUU	chr17:8076705-8076908(-)$1	203	139	142	8.9999
UUU	chr19:5140264-5140509(+)$1	245	146	149	8.9999
UUU	chr17:8076690-8076892(-)$1	202	123	126	8.9999
UUU	chr11:93464070-93464283(-)$1	213	1	4	8.9999
uuu	chr11:122929983-122930187(-)$1	204	90	93	8.9999
uuu	chr8:33370944-33371154(+)$1	210	52	55	8.9999
UUU	chr6:31802976-31803178(+)$1	202	144	147	8.9999
UUU	chr17:8076729-8076934(-)$1	205	19	22	8.9999
UUU	chr6:31802978-31803193(+)$1	215	142	145	8.9999
UUU	chr17:7481292-7481499(+)$1	207	65	68	8.9999
uuu	chr11:122929954-122930162(-)$1	208	65	68	8.9999
UUU	chr17:7481273-7481476(+)$1	203	84	87	8.9999
UUU	chr5:85916223-85916459(+)$1	236	51	54	8.9999
UUU	chr18:47017941-47018154(-)$1	213	69	72	8.9999
UUU	chr11:75111371-75111588(+)$1	217	30	33	8.9999
UUU	chr6:31804762-31804988(+)$1	226	27	30	8.9999
uuu	chr11:62609033-62609240(-)$1	207	11	14	8.9999
uuu	chr8:33370934-33371141(+)$1	207	62	65	8.9999
UUU	chr11:122929549-122929756(-)$1	207	12	15	8.9999
uuu	chr11:62609045-62609248(-)$1	203	19	22	8.9999
UUU	chr4:74277722-74277929(+)$1	207	15	18	8.9999
UUU	chr4:74283238-74283458(+)$1	220	0	3	8.9999
uuu	chr11:122929949-122930154(-)$1	205	57	60	8.9999
UUU	chr11:93466553-93466760(-)$1	207	20	23	8.9999
UUU	chr17:8076721-8076924(-)$1	203	9	12	8.9999
UUU	chr17:27047520-27047734(+)$1	214	31	34	8.9999
UUU	chr19:49993180-49993385(+)$1	205	70	73	8.9999
UUU	chr11:93464043-93464252(-)$1	209	3	6	8.9999
UUU	chr4:74279074-74279282(+)$1	208	41	44	8.9999
UUU	chr11:75111395-75111603(+)$1	208	6	9	8.9999
UUU	chr4:74280719-74280980(+)$1	261	11	14	8.9999
UUU	chr4:74277627-74277850(+)$1	223	18	21	8.9999
UUU	chr17:8076716-8076921(-)$1	205	6	9	8.9999
UUU	chr4:74279036-74279257(+)$1	221	79	82	8.9999
UUU	chr17:7481277-7481492(+)$1	215	80	83	8.9999
UUU	chr5:180670222-180670425(-)$1	203	0	3	8.9999
uuu	chr11:122929967-122930183(-)$1	216	86	89	8.9999
UUU	chr6:31803000-31803204(+)$1	204	120	123	8.9999
UUU	chr17:8076746-8076961(-)$1	215	18	21	8.9999
UUU	chr17:8076698-8076905(-)$1	207	136	139	8.9999
UUU	chr17:27050637-27050845(+)$1	208	2	5	8.9999
uuu	chr11:62609065-62609282(-)$1	217	15	18	8.9999
UUU	chr3:133472373-133472645(+)$1	272	59	62	8.9999
UUU	chr11:75111425-75111677(+)$1	252	0	3	8.9999
UUU	chr4:74277612-74277827(+)$1	215	6	9	8.9999
UUU	chr2:216229576-216229807(-)$1	231	11	14	8.9999
UUU	chr19:49993185-49993404(+)$1	219	65	68	8.9999
UUU	chr2:216230190-216230443(-)$1	253	59	62	8.9999
UUU	chr4:74277660-74277879(+)$1	219	27	30	8.9999
uuu	chr4:74283261-74283480(+)$1	219	132	135	8.9999
UUU	chr5:180670238-180670479(-)$1	241	42	45	8.9999
UUU	chr4:74272247-74272457(+)$1	210	23	26	8.9999
UUU	chr11:93466568-93466783(-)$1	215	43	46	8.9999
UUU	chr4:74279232-74279447(+)$1	215	189	192	8.9999
UUU	chr18:47017954-47018165(-)$1	211	80	83	8.9999
uuu	chr8:33370927-33371134(+)$1	207	69	72	8.9999
UUU	chr2:216232611-216232826(-)$1	215	8	11	8.9999
uuu	chr11:62609048-62609265(-)$1	217	36	39	8.9999
UUU	chr17:8076692-8076898(-)$1	206	129	132	8.9999
uuu	chr11:62609040-62609245(-)$1	205	16	19	8.9999
UUU	chr17:64224096-64224335(-)$1	239	4	7	8.9999
UUU	chr17:8076668-8076890(-)$1	222	121	124	8.9999
UUU	chr2:216230166-216230390(-)$1	224	6	9	8.9999
UUU	chr3:133467237-133467499(+)$1	262	94	97	8.9999
UUU	chr3:195789624-195789903(-)$1	279	58	61	8.9999
UUU	chr11:122929542-122929749(-)$1	207	5	8	8.9999
UUU	chr4:152024897-152025126(+)$1	229	58	61	8.9999
UUU	chr17:8076734-8076940(-)$1	206	25	28	8.9999
UUU	chr4:74283805-74284025(+)$1	220	104	107	8.9999
uuu	chr11:62609027-62609233(-)$1	206	4	7	8.9999
UUU	chr19:49993176-49993380(+)$1	204	74	77	8.9999
uuu	chr11:62609096-62609311(-)$1	215	44	47	8.9999
UUU	chr17:8076772-8077000(-)$1	228	57	60	8.9999
UUU	chr19:49993159-49993376(+)$1	217	91	94	8.9999
UUU	chr17:27047506-27047720(+)$1	214	1	4	8.9999
UUU	chr17:8076769-8076972(-)$1	203	29	32	8.9999
uuu	chr4:74283705-74283920(+)$1	215	27	30	8.9999
UUU	chr18:47017932-47018141(-)$1	209	56	59	8.9999
uuu	chr11:62609111-62609355(-)$1	244	88	91	8.9999
uuu	chr11:62609082-62609296(-)$1	214	29	32	8.9999
UUU	chr12:9245960-9246179(-)$1	219	104	107	8.9999
UUU	chr11:75111343-75111571(+)$1	228	17	20	8.9999
uuu	chr11:62608993-62609220(-)$1	227	38	41	8.9999
UUU	chr15:25227082-25227299(+)$1	217	104	107	8.9999
UUU	chr15:25227038-25227282(+)$1	244	22	25	8.9999
UUU	chr4:74279121-74279348(+)$1	227	187	190	8.9999
UUU	chr17:7481240-7481473(+)$1	233	117	120	8.9999
uuu	chr8:33370968-33371172(+)$1	204	28	31	8.9999
UUU	chr6:31802964-31803176(+)$1	212	156	159	8.9999
uuu	chr11:122929525-122929742(-)$1	217	73	76	8.9999
UUU	chr3:133467184-133467437(+)$1	253	147	150	8.9999
UUU	chr4:74272245-74272447(+)$1	202	25	28	8.9999
UUU	chr11:93463593-93463811(-)$1	218	5	8	8.9999
UUU	chr11:75111388-75111595(+)$1	207	13	16	8.9999
UUU	chr19:49993125-49993359(+)$1	234	125	128	8.9999
UUU	chr4:74283198-74283424(+)$1	226	9	12	8.9999

#otherMatches

#Struct PSSM
c[b	chr17:27047485-27047706(+)$1	221	22	25	8.9999
E}I	chr17:8076705-8076908(-)$1	203	139	142	8.9999
999	chr19:5140264-5140509(+)$1	245	146	149	8.9999
nnb	chr17:8076690-8076892(-)$1	202	123	126	8.9999
:::	chr11:93464070-93464283(-)$1	213	1	4	8.9999
cc[	chr11:122929983-122930187(-)$1	204	90	93	8.9999
===	chr8:33370944-33371154(+)$1	210	52	55	8.9999
YYB	chr6:31802976-31803178(+)$1	202	144	147	8.9999
MMC	chr17:8076729-8076934(-)$1	205	19	22	8.9999
YYB	chr6:31802978-31803193(+)$1	215	142	145	8.9999
$$$	chr17:7481292-7481499(+)$1	207	65	68	8.9999
cc[	chr11:122929954-122930162(-)$1	208	65	68	8.9999
$$$	chr17:7481273-7481476(+)$1	203	84	87	8.9999
ecc	chr5:85916223-85916459(+)$1	236	51	54	8.9999
:cc	chr18:47017941-47018154(-)$1	213	69	72	8.9999
===	chr11:75111371-75111588(+)$1	217	30	33	8.9999
eee	chr6:31804762-31804988(+)$1	226	27	30	8.9999
qqq	chr11:62609033-62609240(-)$1	207	11	14	8.9999
===	chr8:33370934-33371141(+)$1	207	62	65	8.9999
eee	chr11:122929549-122929756(-)$1	207	12	15	8.9999
qqq	chr11:62609045-62609248(-)$1	203	19	22	8.9999
hhh	chr4:74277722-74277929(+)$1	207	15	18	8.9999
HHH	chr4:74283238-74283458(+)$1	220	0	3	8.9999
cc[	chr11:122929949-122930154(-)$1	205	57	60	8.9999
eqq	chr11:93466553-93466760(-)$1	207	20	23	8.9999
FFF	chr17:8076721-8076924(-)$1	203	9	12	8.9999
JJJ	chr17:27047520-27047734(+)$1	214	31	34	8.9999
DDK	chr19:49993180-49993385(+)$1	205	70	73	8.9999
{CC	chr11:93464043-93464252(-)$1	209	3	6	8.9999
GGG	chr4:74279074-74279282(+)$1	208	41	44	8.9999
===	chr11:75111395-75111603(+)$1	208	6	9	8.9999
GGG	chr4:74280719-74280980(+)$1	261	11	14	8.9999
GGG	chr4:74277627-74277850(+)$1	223	18	21	8.9999
::C	chr17:8076716-8076921(-)$1	205	6	9	8.9999
eee	chr4:74279036-74279257(+)$1	221	79	82	8.9999
$$$	chr17:7481277-7481492(+)$1	215	80	83	8.9999
:::	chr5:180670222-180670425(-)$1	203	0	3	8.9999
cc[	chr11:122929967-122930183(-)$1	216	86	89	8.9999
%%%	chr6:31803000-31803204(+)$1	204	120	123	8.9999
[dd	chr17:8076746-8076961(-)$1	215	18	21	8.9999
E}H	chr17:8076698-8076905(-)$1	207	136	139	8.9999
GGG	chr17:27050637-27050845(+)$1	208	2	5	8.9999
mmm	chr11:62609065-62609282(-)$1	217	15	18	8.9999
qqq	chr3:133472373-133472645(+)$1	272	59	62	8.9999
:::	chr11:75111425-75111677(+)$1	252	0	3	8.9999
$$$	chr4:74277612-74277827(+)$1	215	6	9	8.9999
ggg	chr2:216229576-216229807(-)$1	231	11	14	8.9999
:::	chr19:49993185-49993404(+)$1	219	65	68	8.9999
ood	chr2:216230190-216230443(-)$1	253	59	62	8.9999
NNN	chr4:74277660-74277879(+)$1	219	27	30	8.9999
ggg	chr4:74283261-74283480(+)$1	219	132	135	8.9999
vvv	chr5:180670238-180670479(-)$1	241	42	45	8.9999
CCC	chr4:74272247-74272457(+)$1	210	23	26	8.9999
eqq	chr11:93466568-93466783(-)$1	215	43	46	8.9999
]dd	chr4:74279232-74279447(+)$1	215	189	192	8.9999
:cc	chr18:47017954-47018165(-)$1	211	80	83	8.9999
===	chr8:33370927-33371134(+)$1	207	69	72	8.9999
ggg	chr2:216232611-216232826(-)$1	215	8	11	8.9999
qqq	chr11:62609048-62609265(-)$1	217	36	39	8.9999
nnb	chr17:8076692-8076898(-)$1	206	129	132	8.9999
qqq	chr11:62609040-62609245(-)$1	205	16	19	8.9999
nnn	chr17:64224096-64224335(-)$1	239	4	7	8.9999
nnb	chr17:8076668-8076890(-)$1	222	121	124	8.9999
DDD	chr2:216230166-216230390(-)$1	224	6	9	8.9999
G::	chr3:133467237-133467499(+)$1	262	94	97	8.9999
%%c	chr3:195789624-195789903(-)$1	279	58	61	8.9999
ggg	chr11:122929542-122929749(-)$1	207	5	8	8.9999
::d	chr4:152024897-152025126(+)$1	229	58	61	8.9999
MMC	chr17:8076734-8076940(-)$1	206	25	28	8.9999
:gg	chr4:74283805-74284025(+)$1	220	104	107	8.9999
iii	chr11:62609027-62609233(-)$1	206	4	7	8.9999
:::	chr19:49993176-49993380(+)$1	204	74	77	8.9999
gg:	chr11:62609096-62609311(-)$1	215	44	47	8.9999
nnn	chr17:8076772-8077000(-)$1	228	57	60	8.9999
uuu	chr19:49993159-49993376(+)$1	217	91	94	8.9999
:::	chr17:27047506-27047720(+)$1	214	1	4	8.9999
:::	chr17:8076769-8076972(-)$1	203	29	32	8.9999
%%%	chr4:74283705-74283920(+)$1	215	27	30	8.9999
:cc	chr18:47017932-47018141(-)$1	209	56	59	8.9999
gg4	chr11:62609111-62609355(-)$1	244	88	91	8.9999
mmm	chr11:62609082-62609296(-)$1	214	29	32	8.9999
:::	chr12:9245960-9246179(-)$1	219	104	107	8.9999
mmi	chr11:75111343-75111571(+)$1	228	17	20	8.9999
:::	chr11:62608993-62609220(-)$1	227	38	41	8.9999
%%%	chr15:25227082-25227299(+)$1	217	104	107	8.9999
GGG	chr15:25227038-25227282(+)$1	244	22	25	8.9999
FFF	chr4:74279121-74279348(+)$1	227	187	190	8.9999
$$$	chr17:7481240-7481473(+)$1	233	117	120	8.9999
===	chr8:33370968-33371172(+)$1	204	28	31	8.9999
YYB	chr6:31802964-31803176(+)$1	212	156	159	8.9999
g::	chr11:122929525-122929742(-)$1	217	73	76	8.9999
d""	chr3:133467184-133467437(+)$1	253	147	150	8.9999
b22	chr4:74272245-74272447(+)$1	202	25	28	8.9999
f%%	chr11:93463593-93463811(-)$1	218	5	8	8.9999
===	chr11:75111388-75111595(+)$1	207	13	16	8.9999
uuu	chr19:49993125-49993359(+)$1	234	125	128	8.9999
dss	chr4:74283198-74283424(+)$1	226	9	12	8.9999

#DB
(.(	chr17:27047485-27047706(+)$1	1	22	25	8.9999
).)	chr17:8076705-8076908(-)$1	1	139	142	8.9999
...	chr19:5140264-5140509(+)$1	1	146	149	8.9999
..)	chr17:8076690-8076892(-)$1	1	123	126	8.9999
...	chr11:93464070-93464283(-)$1	1	1	4	8.9999
((.	chr11:122929983-122930187(-)$1	1	90	93	8.9999
)))	chr8:33370944-33371154(+)$1	1	52	55	8.9999
..)	chr6:31802976-31803178(+)$1	1	144	147	8.9999
..(	chr17:8076729-8076934(-)$1	1	19	22	8.9999
..)	chr6:31802978-31803193(+)$1	1	142	145	8.9999
...	chr17:7481292-7481499(+)$1	1	65	68	8.9999
((.	chr11:122929954-122930162(-)$1	1	65	68	8.9999
...	chr17:7481273-7481476(+)$1	1	84	87	8.9999
)))	chr5:85916223-85916459(+)$1	1	51	54	8.9999
.((	chr18:47017941-47018154(-)$1	1	69	72	8.9999
(((	chr11:75111371-75111588(+)$1	1	30	33	8.9999
)))	chr6:31804762-31804988(+)$1	1	27	30	8.9999
...	chr11:62609033-62609240(-)$1	1	11	14	8.9999
)))	chr8:33370934-33371141(+)$1	1	62	65	8.9999
(((	chr11:122929549-122929756(-)$1	1	12	15	8.9999
...	chr11:62609045-62609248(-)$1	1	19	22	8.9999
(((	chr4:74277722-74277929(+)$1	1	15	18	8.9999
(((	chr4:74283238-74283458(+)$1	1	0	3	8.9999
((.	chr11:122929949-122930154(-)$1	1	57	60	8.9999
(..	chr11:93466553-93466760(-)$1	1	20	23	8.9999
(((	chr17:8076721-8076924(-)$1	1	9	12	8.9999
(((	chr17:27047520-27047734(+)$1	1	31	34	8.9999
((.	chr19:49993180-49993385(+)$1	1	70	73	8.9999
.((	chr11:93464043-93464252(-)$1	1	3	6	8.9999
(((	chr4:74279074-74279282(+)$1	1	41	44	8.9999
(((	chr11:75111395-75111603(+)$1	1	6	9	8.9999
(((	chr4:74280719-74280980(+)$1	1	11	14	8.9999
(((	chr4:74277627-74277850(+)$1	1	18	21	8.9999
..(	chr17:8076716-8076921(-)$1	1	6	9	8.9999
)))	chr4:74279036-74279257(+)$1	1	79	82	8.9999
...	chr17:7481277-7481492(+)$1	1	80	83	8.9999
...	chr5:180670222-180670425(-)$1	1	0	3	8.9999
((.	chr11:122929967-122930183(-)$1	1	86	89	8.9999
...	chr6:31803000-31803204(+)$1	1	120	123	8.9999
.((	chr17:8076746-8076961(-)$1	1	18	21	8.9999
).)	chr17:8076698-8076905(-)$1	1	136	139	8.9999
(((	chr17:27050637-27050845(+)$1	1	2	5	8.9999
...	chr11:62609065-62609282(-)$1	1	15	18	8.9999
...	chr3:133472373-133472645(+)$1	1	59	62	8.9999
...	chr11:75111425-75111677(+)$1	1	0	3	8.9999
...	chr4:74277612-74277827(+)$1	1	6	9	8.9999
(((	chr2:216229576-216229807(-)$1	1	11	14	8.9999
...	chr19:49993185-49993404(+)$1	1	65	68	8.9999
..)	chr2:216230190-216230443(-)$1	1	59	62	8.9999
...	chr4:74277660-74277879(+)$1	1	27	30	8.9999
)))	chr4:74283261-74283480(+)$1	1	132	135	8.9999
...	chr5:180670238-180670479(-)$1	1	42	45	8.9999
(((	chr4:74272247-74272457(+)$1	1	23	26	8.9999
(..	chr11:93466568-93466783(-)$1	1	43	46	8.9999
.))	chr4:74279232-74279447(+)$1	1	189	192	8.9999
.((	chr18:47017954-47018165(-)$1	1	80	83	8.9999
)))	chr8:33370927-33371134(+)$1	1	69	72	8.9999
(((	chr2:216232611-216232826(-)$1	1	8	11	8.9999
...	chr11:62609048-62609265(-)$1	1	36	39	8.9999
..)	chr17:8076692-8076898(-)$1	1	129	132	8.9999
...	chr11:62609040-62609245(-)$1	1	16	19	8.9999
...	chr17:64224096-64224335(-)$1	1	4	7	8.9999
..)	chr17:8076668-8076890(-)$1	1	121	124	8.9999
(((	chr2:216230166-216230390(-)$1	1	6	9	8.9999
(..	chr3:133467237-133467499(+)$1	1	94	97	8.9999
..(	chr3:195789624-195789903(-)$1	1	58	61	8.9999
(((	chr11:122929542-122929749(-)$1	1	5	8	8.9999
..(	chr4:152024897-152025126(+)$1	1	58	61	8.9999
..(	chr17:8076734-8076940(-)$1	1	25	28	8.9999
.((	chr4:74283805-74284025(+)$1	1	104	107	8.9999
(((	chr11:62609027-62609233(-)$1	1	4	7	8.9999
...	chr19:49993176-49993380(+)$1	1	74	77	8.9999
)).	chr11:62609096-62609311(-)$1	1	44	47	8.9999
...	chr17:8076772-8077000(-)$1	1	57	60	8.9999
...	chr19:49993159-49993376(+)$1	1	91	94	8.9999
...	chr17:27047506-27047720(+)$1	1	1	4	8.9999
...	chr17:8076769-8076972(-)$1	1	29	32	8.9999
...	chr4:74283705-74283920(+)$1	1	27	30	8.9999
.((	chr18:47017932-47018141(-)$1	1	56	59	8.9999
)).	chr11:62609111-62609355(-)$1	1	88	91	8.9999
...	chr11:62609082-62609296(-)$1	1	29	32	8.9999
...	chr12:9245960-9246179(-)$1	1	104	107	8.9999
..)	chr11:75111343-75111571(+)$1	1	17	20	8.9999
...	chr11:62608993-62609220(-)$1	1	38	41	8.9999
...	chr15:25227082-25227299(+)$1	1	104	107	8.9999
(((	chr15:25227038-25227282(+)$1	1	22	25	8.9999
)))	chr4:74279121-74279348(+)$1	1	187	190	8.9999
...	chr17:7481240-7481473(+)$1	1	117	120	8.9999
)))	chr8:33370968-33371172(+)$1	1	28	31	8.9999
..)	chr6:31802964-31803176(+)$1	1	156	159	8.9999
)..	chr11:122929525-122929742(-)$1	1	73	76	8.9999
(..	chr3:133467184-133467437(+)$1	1	147	150	8.9999
)..	chr4:74272245-74272447(+)$1	1	25	28	8.9999
(..	chr11:93463593-93463811(-)$1	1	5	8	8.9999
(((	chr11:75111388-75111595(+)$1	1	13	16	8.9999
...	chr19:49993125-49993359(+)$1	1	125	128	8.9999
(..	chr4:74283198-74283424(+)$1	1	9	12	8.9999

#PSSM
U : 0.78	u : 0.21	
U : 0.78	u : 0.21	
U : 0.78	u : 0.21	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_transcript_m1_run1.nuc.txt

#NT
CCUGUGC	chr12:57556588-57556830(+)$1	242	95	102	15.1000
CCUGGGC	chr8:57906013-57906363(-)$1	350	338	345	18.2000
CCUGGGC	chr17:79804207-79804428(-)$1	221	198	205	18.2000
CCUGAGC	chr1:236228069-236228338(-)$1	269	42	49	14.7000
GCUGGGC	chr12:57571133-57571354(+)$1	221	140	147	14.6000
CCUGGCC	chr17:76968289-76968551(-)$1	262	19	26	14.2000
GCUGGGC	chr9:96009765-96010121(+)$1	356	257	264	14.6000
CCUGGGU	chr21:46912509-46912727(+)$1	218	10	17	13.8000
CCUGGCC	chr20:61460879-61461132(+)$1	253	47	54	14.2000
GCUGGGC	chr19:45411893-45412148(+)$1	255	22	29	14.6000
CCUGAGC	chr2:220435942-220436229(-)$1	287	44	51	14.7000
CCUGGGC	chr1:43394505-43394746(-)$1	241	188	195	18.2000
CCUGUGC	chr10:95353498-95353742(-)$1	244	31	38	15.1000
CCUGGGC	chr20:39800781-39801023(+)$1	242	1	8	18.2000
CCUGGCC	chr20:17602083-17602290(-)$1	207	100	107	14.2000
gcugggc	chr2:203141085-203141322(+)$1	237	196	203	14.6000
CCUGGGC	chr20:61471852-61472059(+)$1	207	97	104	18.2000
CCUGCGC	chr1:109642956-109643190(+)$1	234	8	15	15.0000
CCUGGGC	chr3:58109046-58109310(+)$1	264	141	148	18.2000
CCUGGCC	chr1:230839950-230840183(-)$1	233	34	41	14.2000
GCUGGGC	chr21:46907261-46907507(+)$1	246	174	181	14.6000
GCUGGGC	chr12:6879223-6879476(+)$1	253	175	182	14.6000
CCUGGGC	chr11:1774751-1774973(-)$1	222	153	160	18.2000
ccugggc	chr17:64263807-64264040(+)$1	233	17	24	18.2000
CCUGGGC	chr17:76969118-76969330(-)$1	212	147	154	18.2000
CCUGGGC	chr17:76969076-76969292(-)$1	216	109	116	18.2000
CCUGGGC	chr21:46910092-46910343(+)$1	251	49	56	18.2000
CCUGGCC	chr1:43396752-43396971(-)$1	219	50	57	14.2000
CCUGGGC	chr20:61463405-61463629(+)$1	224	27	34	18.2000
ccugggc	chr7:48672249-48672510(+)$1	261	47	54	18.2000
CCUGGGC	chr1:985715-985954(+)$1	239	229	236	18.2000
CCUGUGC	chr21:46915235-46915447(+)$1	212	19	26	15.1000
CCUGCGC	chr3:186338492-186338722(+)$1	230	67	74	15.0000
CCUGCGC	chr19:45411956-45412298(+)$1	342	70	77	15.0000
CCUGGGC	chr17:7480100-7480356(+)$1	256	135	142	18.2000
CCUGGGC	chr2:97482331-97482584(+)$1	253	83	90	18.2000
CCUGGGC	chr20:61449772-61450004(+)$1	232	121	128	18.2000
CCUGGGU	chr6:24357741-24358074(-)$1	333	14	21	13.8000
ccugcgc	chr19:893455-893689(+)$1	234	89	96	15.0000
CCUGUGC	chr21:46915171-46915394(+)$1	223	83	90	15.1000
CCUGCGC	chr22:33197740-33197992(+)$1	252	49	56	15.0000
CCUGGGC	chr2:220408156-220408422(-)$1	266	224	231	18.2000
CCUGGGC	chr9:116958143-116958389(+)$1	246	110	117	18.2000
CCUGGGC	chr19:6707134-6707379(-)$1	245	192	199	18.2000
gcugggc	chr1:11986199-11986445(-)$1	246	95	102	14.6000
CCUGGGU	chr4:1809190-1809416(+)$1	226	10	17	13.8000
CCUGUGC	chr3:49160252-49160538(-)$1	286	78	85	15.1000
CCUGUGC	chr9:128003242-128003491(-)$1	249	32	39	15.1000
CCUGGGC	chr16:15014074-15014344(+)$1	270	10	17	18.2000

#otherMatches

#Struct PSSM
c!!dddd	chr8:145640036-145640325(-)$1	289	115	122	18.2000
ee]bb22	chr12:57556588-57556830(+)$1	242	95	102	15.1000
c22gggg	chr8:57906013-57906363(-)$1	350	338	345	18.2000
dd:DDDD	chr17:79804207-79804428(-)$1	221	198	205	18.2000
EELLLBB	chr1:236228069-236228338(-)$1	269	42	49	14.7000
h22bbdd	chr12:57571133-57571354(+)$1	221	140	147	14.6000
FFFFFFD	chr17:76968289-76968551(-)$1	262	19	26	14.2000
EEEEEEE	chr9:96009765-96010121(+)$1	356	257	264	14.6000
CCCccc[	chr21:46912509-46912727(+)$1	218	10	17	13.8000
mhhhhhh	chr20:61460879-61461132(+)$1	253	47	54	14.2000
CCC:ccc	chr19:45411893-45412148(+)$1	255	22	29	14.6000
dddd:cc	chr2:220435942-220436229(-)$1	287	44	51	14.7000
IIIIICC	chr1:43394505-43394746(-)$1	241	188	195	18.2000
:ddddmm	chr10:95353498-95353742(-)$1	244	31	38	15.1000
CC{FFFF	chr20:39800781-39801023(+)$1	242	1	8	18.2000
cccgggg	chr20:17602083-17602290(-)$1	207	100	107	14.2000
ffffff!	chr2:203141085-203141322(+)$1	237	196	203	14.6000
dddcccc	chr20:61471852-61472059(+)$1	207	97	104	18.2000
qqqccc:	chr1:109642956-109643190(+)$1	234	8	15	15.0000
clllccc	chr3:58109046-58109310(+)$1	264	141	148	18.2000
nnnccc:	chr1:230839950-230840183(-)$1	233	34	41	14.2000
:EEEEE}	chr21:46907261-46907507(+)$1	246	174	181	14.6000
ccc[eee	chr12:6879223-6879476(+)$1	253	175	182	14.6000
::ccc[c	chr11:1774751-1774973(-)$1	222	153	160	18.2000
{BB{HHH	chr17:64263807-64264040(+)$1	233	17	24	18.2000
gggg]bb	chr17:76969118-76969330(-)$1	212	147	154	18.2000
gggg]bb	chr17:76969076-76969292(-)$1	216	109	116	18.2000
f]hhhhh	chr21:46910092-46910343(+)$1	251	49	56	18.2000
ddd22ee	chr1:43396752-43396971(-)$1	219	50	57	14.2000
mmccccc	chr20:61463405-61463629(+)$1	224	27	34	18.2000
iiiiiii	chr7:48672249-48672510(+)$1	261	47	54	18.2000
FFFFFF:	chr1:985715-985954(+)$1	239	229	236	18.2000
eee"""d	chr21:46915235-46915447(+)$1	212	19	26	15.1000
EEE::ii	chr3:186338492-186338722(+)$1	230	67	74	15.0000
::fffff	chr19:45411956-45412298(+)$1	342	70	77	15.0000
eeee:gg	chr17:7480100-7480356(+)$1	256	135	142	18.2000
ebb]fff	chr2:97482331-97482584(+)$1	253	83	90	18.2000
DDD:FFF	chr20:61449772-61450004(+)$1	232	121	128	18.2000
glllggg	chr6:24357741-24358074(-)$1	333	14	21	13.8000
cccnnnn	chr19:893455-893689(+)$1	234	89	96	15.0000
eee"""d	chr21:46915171-46915394(+)$1	223	83	90	15.1000
ccccc##	chr22:33197740-33197992(+)$1	252	49	56	15.0000
:::cccn	chr2:220408156-220408422(-)$1	266	224	231	18.2000
22dddd5	chr9:116958143-116958389(+)$1	246	110	117	18.2000
mmmccc]	chr19:6707134-6707379(-)$1	245	192	199	18.2000
ooooooa	chr1:11986199-11986445(-)$1	246	95	102	14.6000
MMGGGGG	chr4:1809190-1809416(+)$1	226	10	17	13.8000
ff####f	chr3:49160252-49160538(-)$1	286	78	85	15.1000
GGGGGbb	chr9:128003242-128003491(-)$1	249	32	39	15.1000
ffffff"	chr16:15014074-15014344(+)$1	270	10	17	18.2000

#DB
(..((((	chr8:145640036-145640325(-)$1	1	115	122	18.2000
)).))..	chr12:57556588-57556830(+)$1	1	95	102	15.1000
)..))))	chr8:57906013-57906363(-)$1	1	338	345	18.2000
)).))))	chr17:79804207-79804428(-)$1	1	198	205	18.2000
((...((	chr1:236228069-236228338(-)$1	1	42	49	14.7000
)..))((	chr12:57571133-57571354(+)$1	1	140	147	14.6000
(((((((	chr17:76968289-76968551(-)$1	1	19	26	14.2000
(((((((	chr9:96009765-96010121(+)$1	1	257	264	14.6000
((((((.	chr21:46912509-46912727(+)$1	1	10	17	13.8000
.))))))	chr20:61460879-61461132(+)$1	1	47	54	14.2000
(((.(((	chr19:45411893-45412148(+)$1	1	22	29	14.6000
)))).((	chr2:220435942-220436229(-)$1	1	44	51	14.7000
)))))))	chr1:43394505-43394746(-)$1	1	188	195	18.2000
.((((..	chr10:95353498-95353742(-)$1	1	31	38	15.1000
((.((((	chr20:39800781-39801023(+)$1	1	1	8	18.2000
(((((((	chr20:17602083-17602290(-)$1	1	100	107	14.2000
((((((.	chr2:203141085-203141322(+)$1	1	196	203	14.6000
)))))))	chr20:61471852-61472059(+)$1	1	97	104	18.2000
...))).	chr1:109642956-109643190(+)$1	1	8	15	15.0000
(...)))	chr3:58109046-58109310(+)$1	1	141	148	18.2000
...))).	chr1:230839950-230840183(-)$1	1	34	41	14.2000
.))))).	chr21:46907261-46907507(+)$1	1	174	181	14.6000
(((.(((	chr12:6879223-6879476(+)$1	1	175	182	14.6000
..(((.(	chr11:1774751-1774973(-)$1	1	153	160	18.2000
.((.(((	chr17:64263807-64264040(+)$1	1	17	24	18.2000
)))).))	chr17:76969118-76969330(-)$1	1	147	154	18.2000
)))).))	chr17:76969076-76969292(-)$1	1	109	116	18.2000
).)))))	chr21:46910092-46910343(+)$1	1	49	56	18.2000
)))..))	chr1:43396752-43396971(-)$1	1	50	57	14.2000
..)))((	chr20:61463405-61463629(+)$1	1	27	34	18.2000
)))))))	chr7:48672249-48672510(+)$1	1	47	54	18.2000
)))))).	chr1:985715-985954(+)$1	1	229	236	18.2000
(((...(	chr21:46915235-46915447(+)$1	1	19	26	15.1000
(((..((	chr3:186338492-186338722(+)$1	1	67	74	15.0000
..(((((	chr19:45411956-45412298(+)$1	1	70	77	15.0000
)))).((	chr17:7480100-7480356(+)$1	1	135	142	18.2000
))).)))	chr2:97482331-97482584(+)$1	1	83	90	18.2000
))).(((	chr20:61449772-61450004(+)$1	1	121	128	18.2000
(...)))	chr6:24357741-24358074(-)$1	1	14	21	13.8000
(((....	chr19:893455-893689(+)$1	1	89	96	15.0000
(((...(	chr21:46915171-46915394(+)$1	1	83	90	15.1000
(((((..	chr22:33197740-33197992(+)$1	1	49	56	15.0000
...(((.	chr2:220408156-220408422(-)$1	1	224	231	18.2000
..)))).	chr9:116958143-116958389(+)$1	1	110	117	18.2000
...))).	chr19:6707134-6707379(-)$1	1	192	199	18.2000
......)	chr1:11986199-11986445(-)$1	1	95	102	14.6000
..(((((	chr4:1809190-1809416(+)$1	1	10	17	13.8000
((....(	chr3:49160252-49160538(-)$1	1	78	85	15.1000
(((((((	chr9:128003242-128003491(-)$1	1	32	39	15.1000
((((((.	chr16:15014074-15014344(+)$1	1	10	17	18.2000

#PSSM
C : 0.80	G : 0.10	c : 0.06	g : 0.04	
C : 0.90	c : 0.10	
U : 0.90	u : 0.10	
G : 0.90	g : 0.10	
G : 0.66	U : 0.12	g : 0.08	C : 0.08	A : 0.04	c : 0.02	
G : 0.80	C : 0.10	g : 0.10	
C : 0.84	c : 0.10	U : 0.06	

#score	810.0000000000005
#seq	50
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_UTR_m2_run1.nuc.txt

#NT
CAGG	chr16:67200974-67201201(+)$1	227	45	49	11.9999
CAGG	chr3:47450216-47450498(+)$1	282	18	22	11.9999
CAGG	chr12:48188484-48188737(-)$1	253	2	6	11.9999
CAGG	chr5:876178-876434(-)$1	256	26	30	11.9999
CAGG	chr16:67226843-67227141(+)$1	298	8	12	11.9999
CAGG	chr7:151851255-151851511(-)$1	256	68	72	11.9999
CAGG	chr16:57805360-57805699(-)$1	339	98	102	11.9999
CAGG	chr19:39329471-39329734(-)$1	263	21	25	11.9999
CAGG	chr16:239950-240190(-)$1	240	53	57	11.9999
CAGG	chr19:48624273-48624539(-)$1	266	98	102	11.9999
CAGG	chr6:31929225-31929451(+)$1	226	95	99	11.9999
CAGG	chr1:1325508-1325762(-)$1	254	8	12	11.9999
CAGG	chr20:42162820-42163050(+)$1	230	4	8	11.9999
CAGG	chr7:131099299-131099604(+)$1	305	125	129	11.9999
CAGG	chr17:40865222-40865508(-)$1	286	98	102	11.9999
CAGG	chr20:60889510-60889733(-)$1	223	54	58	11.9999
CAGG	chr11:67376821-67377089(+)$1	268	98	102	11.9999
CAGG	chr22:22318432-22318689(-)$1	257	127	131	11.9999
CAGG	chr19:10468578-10468811(-)$1	233	125	129	11.9999
CAGG	chr16:719494-719707(+)$1	213	55	59	11.9999
CAGG	chr17:34859687-34859965(-)$1	278	15	19	11.9999
CAGG	chr19:49588739-49588976(+)$1	237	74	78	11.9999
CAGG	chrX:122745190-122745436(-)$1	246	74	78	11.9999
CAGG	chr17:27417515-27417734(-)$1	219	98	102	11.9999
CAGG	chr6:31712220-31712458(+)$1	238	99	103	11.9999
CAGG	chr17:38178956-38179177(-)$1	221	33	37	11.9999
CAGG	chr7:5792465-5792711(-)$1	246	30	34	11.9999
CAGG	chr16:842871-843086(+)$1	215	91	95	11.9999
CAGG	chr11:61578345-61578648(-)$1	303	104	108	11.9999
CAGG	chr19:1220586-1220818(+)$1	232	35	39	11.9999
CAGG	chr17:79864546-79864802(-)$1	256	122	126	11.9999
CAGG	chr1:22150736-22150959(-)$1	223	158	162	11.9999
CAGG	chr7:100286873-100287146(-)$1	273	91	95	11.9999
CAGG	chr14:91670948-91671245(+)$1	297	43	47	11.9999
CAGG	chr15:72556830-72557063(-)$1	233	50	54	11.9999
CAGG	chr19:10828717-10828951(+)$1	234	136	140	11.9999
CAGG	chr19:49119033-49119271(-)$1	238	113	117	11.9999
CAGG	chr19:1221181-1221431(+)$1	250	188	192	11.9999
CAGG	chr6:31715072-31715301(+)$1	229	88	92	11.9999
CAGG	chr19:46318625-46318893(-)$1	268	45	49	11.9999
CAGG	chrX:11780234-11780472(+)$1	238	124	128	11.9999
CAGG	chr3:176769338-176769619(-)$1	281	102	106	11.9999
CAGG	chr19:1271464-1271732(+)$1	268	82	86	11.9999
CAGG	chr1:33134819-33135056(+)$1	237	122	126	11.9999
cagg	chr6:32130244-32130508(+)$1	264	27	31	11.9999
CAGG	chr17:76121178-76121466(-)$1	288	32	36	11.9999
CAGG	chr7:131071776-131072054(+)$1	278	242	246	11.9999
CAGG	chr6:28119944-28120263(+)$1	319	183	187	11.9999
CAGG	chr1:146731399-146731636(+)$1	237	127	131	11.9999
CAGG	chr19:41111586-41111813(+)$1	227	78	82	11.9999
CAGG	chr6:16129286-16129580(+)$1	294	25	29	11.9999
CAGG	chr5:134130566-134130804(+)$1	238	62	66	11.9999
CAGG	chr12:56577544-56577783(-)$1	239	104	108	11.9999
CAGG	chr12:49496569-49496828(-)$1	259	8	12	11.9999
CAGG	chr15:28537933-28538173(-)$1	240	137	141	11.9999
CAGG	chr11:799864-800119(-)$1	255	19	23	11.9999
CAGG	chr6:31656410-31656670(-)$1	260	120	124	11.9999
CAGG	chr3:47890886-47891143(+)$1	257	51	55	11.9999
CAGG	chr12:112513436-112513693(-)$1	257	164	168	11.9999
CAGG	chr20:60884943-60885184(-)$1	241	44	48	11.9999
CAGG	chr19:12826379-12826629(-)$1	250	47	51	11.9999
CAGG	chr17:80438936-80439188(+)$1	252	90	94	11.9999
CAGG	chr17:73238391-73238646(-)$1	255	89	93	11.9999
CAGG	chr1:1249085-1249333(-)$1	248	29	33	11.9999
CAGG	chr17:65235445-65235703(-)$1	258	152	156	11.9999
CAGG	chr1:32833856-32834148(-)$1	292	185	189	11.9999
CAGG	chr19:5667733-5667970(+)$1	237	94	98	11.9999
CAGG	chr16:720360-720584(+)$1	224	9	13	11.9999
CAGG	chr1:1562138-1562470(+)$1	332	75	79	11.9999
CAGG	chr17:34866579-34866862(-)$1	283	113	117	11.9999
CAGG	chr17:27438442-27438671(-)$1	229	67	71	11.9999
CAGG	chr15:72557321-72557556(-)$1	235	132	136	11.9999
CAGG	chr1:1328730-1328940(-)$1	210	118	122	11.9999
CAGG	chr1:150298108-150298412(+)$1	304	206	210	11.9999
CAGG	chr20:33501798-33502075(+)$1	277	20	24	11.9999
CAGG	chrX:153581948-153582194(-)$1	246	42	46	11.9999
CAGG	chr11:72533785-72534062(+)$1	277	218	222	11.9999
CAGG	chr8:41529818-41530040(-)$1	222	24	28	11.9999
CAGG	chr8:124381959-124382202(-)$1	243	126	130	11.9999
CAGG	chr12:48183586-48183827(-)$1	241	121	125	11.9999
CAGG	chr12:54799020-54799260(-)$1	240	64	68	11.9999
CAGG	chr7:158449143-158449382(-)$1	239	76	80	11.9999
CAGG	chr17:61889190-61889429(+)$1	239	16	20	11.9999
CAGG	chr12:48181725-48181962(-)$1	237	12	16	11.9999
CAGG	chr16:8895578-8895868(+)$1	290	167	171	11.9999
CAGG	chr17:17720225-17720463(-)$1	238	133	137	11.9999
CAGG	chr21:46914679-46914896(+)$1	217	27	31	11.9999
CAGG	chr9:128104401-128104682(+)$1	281	174	178	11.9999
CAGG	chr17:43174394-43174649(+)$1	255	12	16	11.9999

#otherMatches

#Struct PSSM
::::	chr19:18650091-18650363(-)$1	272	0	4	11.9999
nndd	chr16:67200974-67201201(+)$1	227	45	49	11.9999
ffff	chr3:47450216-47450498(+)$1	282	18	22	11.9999
FFFF	chr12:48188484-48188737(-)$1	253	2	6	11.9999
fff[	chr5:876178-876434(-)$1	256	26	30	11.9999
FFFF	chr16:67226843-67227141(+)$1	298	8	12	11.9999
ffff	chr7:151851255-151851511(-)$1	256	68	72	11.9999
dddf	chr16:57805360-57805699(-)$1	339	98	102	11.9999
c[a[	chr19:39329471-39329734(-)$1	263	21	25	11.9999
eeee	chr16:239950-240190(-)$1	240	53	57	11.9999
a22c	chr19:48624273-48624539(-)$1	266	98	102	11.9999
dddd	chr6:31929225-31929451(+)$1	226	95	99	11.9999
eeee	chr1:1325508-1325762(-)$1	254	8	12	11.9999
CCCC	chr20:42162820-42163050(+)$1	230	4	8	11.9999
FWWW	chr7:131099299-131099604(+)$1	305	125	129	11.9999
ffff	chr17:40865222-40865508(-)$1	286	98	102	11.9999
e[dd	chr20:60889510-60889733(-)$1	223	54	58	11.9999
ooff	chr11:67376821-67377089(+)$1	268	98	102	11.9999
nnnc	chr22:22318432-22318689(-)$1	257	127	131	11.9999
ffff	chr19:10468578-10468811(-)$1	233	125	129	11.9999
mmbb	chr16:719494-719707(+)$1	213	55	59	11.9999
ffff	chr17:34859687-34859965(-)$1	278	15	19	11.9999
eee[	chr19:49588739-49588976(+)$1	237	74	78	11.9999
CCCG	chrX:122745190-122745436(-)$1	246	74	78	11.9999
d[bb	chr17:27417515-27417734(-)$1	219	98	102	11.9999
GGGC	chr6:31712220-31712458(+)$1	238	99	103	11.9999
eee#	chr17:38178956-38179177(-)$1	221	33	37	11.9999
IIII	chr7:5792465-5792711(-)$1	246	30	34	11.9999
dddd	chr16:842871-843086(+)$1	215	91	95	11.9999
fffa	chr11:61578345-61578648(-)$1	303	104	108	11.9999
C{A{	chr19:1220586-1220818(+)$1	232	35	39	11.9999
ffff	chr17:79864546-79864802(-)$1	256	122	126	11.9999
::CC	chr1:22150736-22150959(-)$1	223	158	162	11.9999
$$$b	chr7:100286873-100287146(-)$1	273	91	95	11.9999
EEGG	chr14:91670948-91671245(+)$1	297	43	47	11.9999
"""e	chr15:72556830-72557063(-)$1	233	50	54	11.9999
bsss	chr19:10828717-10828951(+)$1	234	136	140	11.9999
##bb	chr19:49119033-49119271(-)$1	238	113	117	11.9999
fqqq	chr19:1221181-1221431(+)$1	250	188	192	11.9999
oocc	chr6:31715072-31715301(+)$1	229	88	92	11.9999
d%%%	chr19:46318625-46318893(-)$1	268	45	49	11.9999
fff2	chrX:11780234-11780472(+)$1	238	124	128	11.9999
DKKA	chr3:176769338-176769619(-)$1	281	102	106	11.9999
====	chr19:1271464-1271732(+)$1	268	82	86	11.9999
3eee	chr1:33134819-33135056(+)$1	237	122	126	11.9999
cmmm	chr6:32130244-32130508(+)$1	264	27	31	11.9999
DDDB	chr17:76121178-76121466(-)$1	288	32	36	11.9999
[a[d	chr7:131071776-131072054(+)$1	278	242	246	11.9999
3fff	chr6:28119944-28120263(+)$1	319	183	187	11.9999
::dd	chr1:146731399-146731636(+)$1	237	127	131	11.9999
B}FF	chr19:41111586-41111813(+)$1	227	78	82	11.9999
!!cc	chr6:16129286-16129580(+)$1	294	25	29	11.9999
66cc	chr5:134130566-134130804(+)$1	238	62	66	11.9999
eeee	chr12:56577544-56577783(-)$1	239	104	108	11.9999
::FF	chr12:49496569-49496828(-)$1	259	8	12	11.9999
EEEE	chr15:28537933-28538173(-)$1	240	137	141	11.9999
C{BB	chr11:799864-800119(-)$1	255	19	23	11.9999
eeee	chr6:31656410-31656670(-)$1	260	120	124	11.9999
b]dd	chr3:47890886-47891143(+)$1	257	51	55	11.9999
cc22	chr12:112513436-112513693(-)$1	257	164	168	11.9999
F{BB	chr20:60884943-60885184(-)$1	241	44	48	11.9999
eccc	chr19:12826379-12826629(-)$1	250	47	51	11.9999
rrrr	chr17:80438936-80439188(+)$1	252	90	94	11.9999
$$$b	chr17:73238391-73238646(-)$1	255	89	93	11.9999
dddd	chr1:1249085-1249333(-)$1	248	29	33	11.9999
ee::	chr17:65235445-65235703(-)$1	258	152	156	11.9999
d]ee	chr1:32833856-32834148(-)$1	292	185	189	11.9999
B::e	chr19:5667733-5667970(+)$1	237	94	98	11.9999
HHHG	chr16:720360-720584(+)$1	224	9	13	11.9999
MMCC	chr1:1562138-1562470(+)$1	332	75	79	11.9999
KKBB	chr17:34866579-34866862(-)$1	283	113	117	11.9999
eeee	chr17:27438442-27438671(-)$1	229	67	71	11.9999
aeee	chr15:72557321-72557556(-)$1	235	132	136	11.9999
hhhh	chr1:1328730-1328940(-)$1	210	118	122	11.9999
GGGG	chr1:150298108-150298412(+)$1	304	206	210	11.9999
JJFF	chr20:33501798-33502075(+)$1	277	20	24	11.9999
ffff	chrX:153581948-153582194(-)$1	246	42	46	11.9999
eDDD	chr11:72533785-72534062(+)$1	277	218	222	11.9999
ettt	chr8:41529818-41530040(-)$1	222	24	28	11.9999
::::	chr8:124381959-124382202(-)$1	243	126	130	11.9999
ffdd	chr12:48183586-48183827(-)$1	241	121	125	11.9999
""ff	chr12:54799020-54799260(-)$1	240	64	68	11.9999
ee!!	chr7:158449143-158449382(-)$1	239	76	80	11.9999
E{EE	chr17:61889190-61889429(+)$1	239	16	20	11.9999
mccc	chr12:48181725-48181962(-)$1	237	12	16	11.9999
cc]b	chr16:8895578-8895868(+)$1	290	167	171	11.9999
ppdd	chr17:17720225-17720463(-)$1	238	133	137	11.9999
FFGG	chr21:46914679-46914896(+)$1	217	27	31	11.9999
eeee	chr9:128104401-128104682(+)$1	281	174	178	11.9999
EEEE	chr17:43174394-43174649(+)$1	255	12	16	11.9999

#DB
....	chr19:18650091-18650363(-)$1	1	0	4	11.9999
..))	chr16:67200974-67201201(+)$1	1	45	49	11.9999
((((	chr3:47450216-47450498(+)$1	1	18	22	11.9999
((((	chr12:48188484-48188737(-)$1	1	2	6	11.9999
(((.	chr5:876178-876434(-)$1	1	26	30	11.9999
((((	chr16:67226843-67227141(+)$1	1	8	12	11.9999
((((	chr7:151851255-151851511(-)$1	1	68	72	11.9999
))))	chr16:57805360-57805699(-)$1	1	98	102	11.9999
(.(.	chr19:39329471-39329734(-)$1	1	21	25	11.9999
))))	chr16:239950-240190(-)$1	1	53	57	11.9999
)..)	chr19:48624273-48624539(-)$1	1	98	102	11.9999
))))	chr6:31929225-31929451(+)$1	1	95	99	11.9999
((((	chr1:1325508-1325762(-)$1	1	8	12	11.9999
((((	chr20:42162820-42163050(+)$1	1	4	8	11.9999
(...	chr7:131099299-131099604(+)$1	1	125	129	11.9999
))))	chr17:40865222-40865508(-)$1	1	98	102	11.9999
(.((	chr20:60889510-60889733(-)$1	1	54	58	11.9999
..))	chr11:67376821-67377089(+)$1	1	98	102	11.9999
...)	chr22:22318432-22318689(-)$1	1	127	131	11.9999
))))	chr19:10468578-10468811(-)$1	1	125	129	11.9999
..))	chr16:719494-719707(+)$1	1	55	59	11.9999
))))	chr17:34859687-34859965(-)$1	1	15	19	11.9999
(((.	chr19:49588739-49588976(+)$1	1	74	78	11.9999
((((	chrX:122745190-122745436(-)$1	1	74	78	11.9999
(.((	chr17:27417515-27417734(-)$1	1	98	102	11.9999
((((	chr6:31712220-31712458(+)$1	1	99	103	11.9999
(((.	chr17:38178956-38179177(-)$1	1	33	37	11.9999
((((	chr7:5792465-5792711(-)$1	1	30	34	11.9999
((((	chr16:842871-843086(+)$1	1	91	95	11.9999
((((	chr11:61578345-61578648(-)$1	1	104	108	11.9999
(.(.	chr19:1220586-1220818(+)$1	1	35	39	11.9999
))))	chr17:79864546-79864802(-)$1	1	122	126	11.9999
..))	chr1:22150736-22150959(-)$1	1	158	162	11.9999
...(	chr7:100286873-100287146(-)$1	1	91	95	11.9999
((((	chr14:91670948-91671245(+)$1	1	43	47	11.9999
...(	chr15:72556830-72557063(-)$1	1	50	54	11.9999
(...	chr19:10828717-10828951(+)$1	1	136	140	11.9999
..((	chr19:49119033-49119271(-)$1	1	113	117	11.9999
(...	chr19:1221181-1221431(+)$1	1	188	192	11.9999
..))	chr6:31715072-31715301(+)$1	1	88	92	11.9999
(...	chr19:46318625-46318893(-)$1	1	45	49	11.9999
))).	chrX:11780234-11780472(+)$1	1	124	128	11.9999
(..(	chr3:176769338-176769619(-)$1	1	102	106	11.9999
))))	chr19:1271464-1271732(+)$1	1	82	86	11.9999
.)))	chr1:33134819-33135056(+)$1	1	122	126	11.9999
(...	chr6:32130244-32130508(+)$1	1	27	31	11.9999
((((	chr17:76121178-76121466(-)$1	1	32	36	11.9999
.(.(	chr7:131071776-131072054(+)$1	1	242	246	11.9999
.)))	chr6:28119944-28120263(+)$1	1	183	187	11.9999
..((	chr1:146731399-146731636(+)$1	1	127	131	11.9999
).))	chr19:41111586-41111813(+)$1	1	78	82	11.9999
..((	chr6:16129286-16129580(+)$1	1	25	29	11.9999
..))	chr5:134130566-134130804(+)$1	1	62	66	11.9999
((((	chr12:56577544-56577783(-)$1	1	104	108	11.9999
..((	chr12:49496569-49496828(-)$1	1	8	12	11.9999
))))	chr15:28537933-28538173(-)$1	1	137	141	11.9999
(.((	chr11:799864-800119(-)$1	1	19	23	11.9999
))))	chr6:31656410-31656670(-)$1	1	120	124	11.9999
).))	chr3:47890886-47891143(+)$1	1	51	55	11.9999
))..	chr12:112513436-112513693(-)$1	1	164	168	11.9999
(.((	chr20:60884943-60885184(-)$1	1	44	48	11.9999
)(((	chr19:12826379-12826629(-)$1	1	47	51	11.9999
....	chr17:80438936-80439188(+)$1	1	90	94	11.9999
...(	chr17:73238391-73238646(-)$1	1	89	93	11.9999
((((	chr1:1249085-1249333(-)$1	1	29	33	11.9999
))..	chr17:65235445-65235703(-)$1	1	152	156	11.9999
).))	chr1:32833856-32834148(-)$1	1	185	189	11.9999
(..(	chr19:5667733-5667970(+)$1	1	94	98	11.9999
((((	chr16:720360-720584(+)$1	1	9	13	11.9999
..((	chr1:1562138-1562470(+)$1	1	75	79	11.9999
..((	chr17:34866579-34866862(-)$1	1	113	117	11.9999
))))	chr17:27438442-27438671(-)$1	1	67	71	11.9999
))))	chr15:72557321-72557556(-)$1	1	132	136	11.9999
((((	chr1:1328730-1328940(-)$1	1	118	122	11.9999
))))	chr1:150298108-150298412(+)$1	1	206	210	11.9999
((((	chr20:33501798-33502075(+)$1	1	20	24	11.9999
((((	chrX:153581948-153582194(-)$1	1	42	46	11.9999
))))	chr11:72533785-72534062(+)$1	1	218	222	11.9999
(...	chr8:41529818-41530040(-)$1	1	24	28	11.9999
....	chr8:124381959-124382202(-)$1	1	126	130	11.9999
))((	chr12:48183586-48183827(-)$1	1	121	125	11.9999
..((	chr12:54799020-54799260(-)$1	1	64	68	11.9999
((..	chr7:158449143-158449382(-)$1	1	76	80	11.9999
(.((	chr17:61889190-61889429(+)$1	1	16	20	11.9999
.)))	chr12:48181725-48181962(-)$1	1	12	16	11.9999
)).)	chr16:8895578-8895868(+)$1	1	167	171	11.9999
..))	chr17:17720225-17720463(-)$1	1	133	137	11.9999
((((	chr21:46914679-46914896(+)$1	1	27	31	11.9999
))))	chr9:128104401-128104682(+)$1	1	174	178	11.9999
((((	chr17:43174394-43174649(+)$1	1	12	16	11.9999

#PSSM
C : 0.98	c : 0.01	
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	

#score	1079.9999999999995
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_transcript_m2_run2.nuc.txt

#NT
AGC	chr19:11242158-11242386(+)$1	228	170	173	8.9999
AGC	chr14:21161651-21161890(+)$1	239	55	58	8.9999
AGC	chr9:140137240-140137454(+)$1	214	1	4	8.9999
AGC	chr11:16760177-16760461(+)$1	284	79	82	8.9999
AGC	chr6:32940085-32940345(+)$1	260	37	40	8.9999
AGC	chr11:74976544-74976799(-)$1	255	24	27	8.9999
AGC	chr3:88104867-88105177(-)$1	310	55	58	8.9999
AGC	chr10:104181585-104181874(+)$1	289	22	25	8.9999
AGC	chr20:307900-308137(+)$1	237	106	109	8.9999
AGC	chr9:19116243-19116485(-)$1	242	30	33	8.9999
AGC	chr6:26158683-26158921(+)$1	238	30	33	8.9999
AGC	chr1:155106517-155106762(+)$1	245	110	113	8.9999
AGC	chr14:69256598-69256867(-)$1	269	28	31	8.9999
AGC	chr21:46894395-46894639(+)$1	244	154	157	8.9999
AGC	chr2:128605333-128605614(-)$1	281	58	61	8.9999
AGC	chr20:52198201-52198442(-)$1	241	37	40	8.9999
AGC	chr20:31021123-31021364(+)$1	241	64	67	8.9999
AGC	chr14:50235023-50235282(+)$1	259	14	17	8.9999
agc	chr16:87364072-87364361(-)$1	289	83	86	8.9999
agc	chr1:156354114-156354361(+)$1	247	9	12	8.9999
agc	chr14:24105815-24106022(+)$1	207	98	101	8.9999
AGC	chr5:180674188-180674442(+)$1	254	14	17	8.9999
AGC	chr5:73930672-73930900(-)$1	228	28	31	8.9999
AGC	chr19:42795150-42795432(+)$1	282	154	157	8.9999
AGC	chr1:169454855-169455109(-)$1	254	237	240	8.9999
AGC	chr1:8074101-8074345(-)$1	244	166	169	8.9999
AGC	chr2:74730264-74730498(+)$1	234	18	21	8.9999
AGC	chr7:105517305-105517581(+)$1	276	12	15	8.9999
AGC	chr20:22563710-22563955(-)$1	245	115	118	8.9999
AGC	chr17:56434899-56435146(-)$1	247	37	40	8.9999
AGc	chr20:48808609-48808847(+)$1	238	48	51	8.9999
AGC	chr12:115112349-115112593(-)$1	244	4	7	8.9999
AGC	chr15:80215398-80215658(-)$1	260	23	26	8.9999
AGC	chr2:218668804-218669065(-)$1	261	143	146	8.9999
AGC	chr16:22337050-22337308(+)$1	258	6	9	8.9999
AGC	chr16:31719944-31720191(+)$1	247	59	62	8.9999
AGC	chr12:46757419-46757662(-)$1	243	51	54	8.9999
AGC	chr16:70406384-70406695(+)$1	311	84	87	8.9999
AGC	chr14:65405921-65406158(-)$1	237	1	4	8.9999
agc	chr7:100780738-100781028(+)$1	290	216	219	8.9999
AGC	chr17:37884260-37884513(+)$1	253	59	62	8.9999
AGC	chr1:12677592-12677822(-)$1	230	152	155	8.9999
agc	chr16:52580675-52580914(-)$1	239	22	25	8.9999
AGC	chr15:50646628-50646924(-)$1	296	28	31	8.9999
AGC	chr7:72984825-72985136(-)$1	311	61	64	8.9999
AGC	chr10:21962437-21962684(+)$1	247	5	8	8.9999
AGC	chr15:75500841-75501075(+)$1	234	9	12	8.9999
AGC	chr20:54978493-54978753(+)$1	260	3	6	8.9999
AGC	chr12:89744583-89744816(-)$1	233	33	36	8.9999
AGC	chr10:102743360-102743596(+)$1	236	13	16	8.9999
AGC	chr2:43451680-43451895(-)$1	215	55	58	8.9999
AGC	chr16:69362772-69363021(-)$1	249	2	5	8.9999
AGC	chr4:124319078-124319356(+)$1	278	112	115	8.9999
AGC	chr8:128752907-128753122(+)$1	215	6	9	8.9999
AGC	chr14:31364548-31364791(-)$1	243	40	43	8.9999
AGC	chr22:21800180-21800457(+)$1	277	31	34	8.9999
AGC	chr20:34638425-34638638(-)$1	213	19	22	8.9999
AGC	chr8:11695928-11696193(+)$1	265	4	7	8.9999
AGC	chr2:64189204-64189518(-)$1	314	3	6	8.9999
AGC	chr2:48573337-48573596(+)$1	259	51	54	8.9999
AGC	chr19:13264766-13265008(+)$1	242	4	7	8.9999
AGC	chr6:43738472-43738695(+)$1	223	1	4	8.9999
AGC	chr17:80559299-80559545(+)$1	246	25	28	8.9999
AGC	chr10:74034671-74034907(+)$1	236	30	33	8.9999
AGC	chr6:33372993-33373239(+)$1	246	69	72	8.9999
AGC	chr17:46128439-46128680(+)$1	241	15	18	8.9999
AGC	chr1:234743965-234744224(-)$1	259	27	30	8.9999
AGC	chr7:75703782-75704037(-)$1	255	2	5	8.9999
AGC	chr14:21737441-21737654(-)$1	213	94	97	8.9999
AGC	chr16:11931453-11931688(-)$1	235	88	91	8.9999
AGC	chr2:75720566-75720807(-)$1	241	81	84	8.9999
AGC	chr20:58513819-58514100(-)$1	281	13	16	8.9999
AGC	chr3:30713063-30713311(+)$1	248	77	80	8.9999
AGC	chr12:12870382-12870648(+)$1	266	57	60	8.9999
AGC	chr11:46741614-46741854(+)$1	240	2	5	8.9999
AGC	chr5:177658520-177658824(-)$1	304	43	46	8.9999
AGC	chr2:232326625-232326829(-)$1	204	145	148	8.9999
AGC	chr17:48796939-48797193(+)$1	254	65	68	8.9999
AGC	chr1:61554296-61554554(+)$1	258	51	54	8.9999
AGC	chr21:34923015-34923267(+)$1	252	2	5	8.9999
AGC	chr7:5427220-5427462(-)$1	242	130	133	8.9999
AGC	chr3:186506963-186507216(+)$1	253	231	234	8.9999
AGC	chr3:32859626-32859925(+)$1	299	199	202	8.9999
AGC	chr16:24551579-24551832(+)$1	253	66	69	8.9999
AGC	chr6:15246607-15246900(+)$1	293	123	126	8.9999
AGC	chr4:124323186-124323438(+)$1	252	29	32	8.9999
AGC	chr20:377273-377510(+)$1	237	15	18	8.9999
AGC	chr5:137802441-137802705(+)$1	264	63	66	8.9999
AGC	chr15:75502984-75503230(+)$1	246	15	18	8.9999
AGC	chr4:103747661-103747938(-)$1	277	8	11	8.9999
AGC	chr20:3765622-3765863(-)$1	241	128	131	8.9999
AGC	chr1:205589675-205590002(-)$1	327	168	171	8.9999
AGC	chr2:42556983-42557237(+)$1	254	45	48	8.9999
AGC	chr6:1312835-1313087(+)$1	252	42	45	8.9999
AGC	chr14:21167459-21167759(+)$1	300	141	144	8.9999

#otherMatches

#Struct PSSM
rrr	chr21:44836490-44836743(-)$1	253	39	42	8.9999
hhh	chr19:11242158-11242386(+)$1	228	170	173	8.9999
ggf	chr14:21161651-21161890(+)$1	239	55	58	8.9999
:::	chr9:140137240-140137454(+)$1	214	1	4	8.9999
fff	chr11:16760177-16760461(+)$1	284	79	82	8.9999
dd[	chr6:32940085-32940345(+)$1	260	37	40	8.9999
FFF	chr11:74976544-74976799(-)$1	255	24	27	8.9999
ggg	chr3:88104867-88105177(-)$1	310	55	58	8.9999
:==	chr10:104181585-104181874(+)$1	289	22	25	8.9999
iii	chr20:307900-308137(+)$1	237	106	109	8.9999
www	chr9:19116243-19116485(-)$1	242	30	33	8.9999
!cc	chr6:26158683-26158921(+)$1	238	30	33	8.9999
]ee	chr1:155106517-155106762(+)$1	245	110	113	8.9999
ggg	chr14:69256598-69256867(-)$1	269	28	31	8.9999
:ee	chr21:46894395-46894639(+)$1	244	154	157	8.9999
fff	chr2:128605333-128605614(-)$1	281	58	61	8.9999
FFF	chr20:52198201-52198442(-)$1	241	37	40	8.9999
pbb	chr20:31021123-31021364(+)$1	241	64	67	8.9999
[cc	chr14:50235023-50235282(+)$1	259	14	17	8.9999
ttt	chr16:87364072-87364361(-)$1	289	83	86	8.9999
!cc	chr1:156354114-156354361(+)$1	247	9	12	8.9999
:ff	chr14:24105815-24106022(+)$1	207	98	101	8.9999
!dd	chr5:180674188-180674442(+)$1	254	14	17	8.9999
FFF	chr5:73930672-73930900(-)$1	228	28	31	8.9999
[ee	chr19:42795150-42795432(+)$1	282	154	157	8.9999
JJJ	chr1:169454855-169455109(-)$1	254	237	240	8.9999
!a[	chr1:8074101-8074345(-)$1	244	166	169	8.9999
:::	chr2:74730264-74730498(+)$1	234	18	21	8.9999
mmm	chr7:105517305-105517581(+)$1	276	12	15	8.9999
qcc	chr20:22563710-22563955(-)$1	245	115	118	8.9999
ppp	chr17:56434899-56435146(-)$1	247	37	40	8.9999
[cc	chr20:48808609-48808847(+)$1	238	48	51	8.9999
{BB	chr12:115112349-115112593(-)$1	244	4	7	8.9999
(((	chr15:80215398-80215658(-)$1	260	23	26	8.9999
bb2	chr2:218668804-218669065(-)$1	261	143	146	8.9999
KKA	chr16:22337050-22337308(+)$1	258	6	9	8.9999
!gg	chr16:31719944-31720191(+)$1	247	59	62	8.9999
ddd	chr12:46757419-46757662(-)$1	243	51	54	8.9999
ccc	chr16:70406384-70406695(+)$1	311	84	87	8.9999
:::	chr14:65405921-65406158(-)$1	237	1	4	8.9999
fff	chr7:100780738-100781028(+)$1	290	216	219	8.9999
mbb	chr17:37884260-37884513(+)$1	253	59	62	8.9999
fff	chr1:12677592-12677822(-)$1	230	152	155	8.9999
ldd	chr16:52580675-52580914(-)$1	239	22	25	8.9999
:bb	chr15:50646628-50646924(-)$1	296	28	31	8.9999
BBK	chr7:72984825-72985136(-)$1	311	61	64	8.9999
lld	chr10:21962437-21962684(+)$1	247	5	8	8.9999
ddd	chr15:75500841-75501075(+)$1	234	9	12	8.9999
:::	chr20:54978493-54978753(+)$1	260	3	6	8.9999
::f	chr12:89744583-89744816(-)$1	233	33	36	8.9999
!hh	chr10:102743360-102743596(+)$1	236	13	16	8.9999
cbb	chr2:43451680-43451895(-)$1	215	55	58	8.9999
EEE	chr16:69362772-69363021(-)$1	249	2	5	8.9999
ffr	chr4:124319078-124319356(+)$1	278	112	115	8.9999
EEE	chr8:128752907-128753122(+)$1	215	6	9	8.9999
cc&	chr14:31364548-31364791(-)$1	243	40	43	8.9999
::e	chr22:21800180-21800457(+)$1	277	31	34	8.9999
qcc	chr20:34638425-34638638(-)$1	213	19	22	8.9999
:EE	chr8:11695928-11696193(+)$1	265	4	7	8.9999
JJJ	chr2:64189204-64189518(-)$1	314	3	6	8.9999
{FF	chr2:48573337-48573596(+)$1	259	51	54	8.9999
GGG	chr19:13264766-13265008(+)$1	242	4	7	8.9999
:EE	chr6:43738472-43738695(+)$1	223	1	4	8.9999
2bb	chr17:80559299-80559545(+)$1	246	25	28	8.9999
[bb	chr10:74034671-74034907(+)$1	236	30	33	8.9999
D::	chr6:33372993-33373239(+)$1	246	69	72	8.9999
CCC	chr17:46128439-46128680(+)$1	241	15	18	8.9999
::d	chr1:234743965-234744224(-)$1	259	27	30	8.9999
DDD	chr7:75703782-75704037(-)$1	255	2	5	8.9999
[bb	chr14:21737441-21737654(-)$1	213	94	97	8.9999
fmm	chr16:11931453-11931688(-)$1	235	88	91	8.9999
ccc	chr2:75720566-75720807(-)$1	241	81	84	8.9999
eee	chr20:58513819-58514100(-)$1	281	13	16	8.9999
fff	chr3:30713063-30713311(+)$1	248	77	80	8.9999
EEE	chr12:12870382-12870648(+)$1	266	57	60	8.9999
dd!	chr11:46741614-46741854(+)$1	240	2	5	8.9999
DDD	chr5:177658520-177658824(-)$1	304	43	46	8.9999
)))	chr2:232326625-232326829(-)$1	204	145	148	8.9999
mmi	chr17:48796939-48797193(+)$1	254	65	68	8.9999
ncc	chr1:61554296-61554554(+)$1	258	51	54	8.9999
GGG	chr21:34923015-34923267(+)$1	252	2	5	8.9999
f[a	chr7:5427220-5427462(-)$1	242	130	133	8.9999
:::	chr3:186506963-186507216(+)$1	253	231	234	8.9999
nnn	chr3:32859626-32859925(+)$1	299	199	202	8.9999
scc	chr16:24551579-24551832(+)$1	253	66	69	8.9999
[dd	chr6:15246607-15246900(+)$1	293	123	126	8.9999
CC{	chr4:124323186-124323438(+)$1	252	29	32	8.9999
KBB	chr20:377273-377510(+)$1	237	15	18	8.9999
^^^	chr5:137802441-137802705(+)$1	264	63	66	8.9999
fff	chr15:75502984-75503230(+)$1	246	15	18	8.9999
EEE	chr4:103747661-103747938(-)$1	277	8	11	8.9999
wwf	chr20:3765622-3765863(-)$1	241	128	131	8.9999
EBB	chr1:205589675-205590002(-)$1	327	168	171	8.9999
2bb	chr2:42556983-42557237(+)$1	254	45	48	8.9999
!!d	chr6:1312835-1313087(+)$1	252	42	45	8.9999
bcc	chr14:21167459-21167759(+)$1	300	141	144	8.9999

#DB
...	chr21:44836490-44836743(-)$1	1	39	42	8.9999
)))	chr19:11242158-11242386(+)$1	1	170	173	8.9999
))(	chr14:21161651-21161890(+)$1	1	55	58	8.9999
...	chr9:140137240-140137454(+)$1	1	1	4	8.9999
(((	chr11:16760177-16760461(+)$1	1	79	82	8.9999
((.	chr6:32940085-32940345(+)$1	1	37	40	8.9999
(((	chr11:74976544-74976799(-)$1	1	24	27	8.9999
(((	chr3:88104867-88105177(-)$1	1	55	58	8.9999
.((	chr10:104181585-104181874(+)$1	1	22	25	8.9999
(((	chr20:307900-308137(+)$1	1	106	109	8.9999
...	chr9:19116243-19116485(-)$1	1	30	33	8.9999
.((	chr6:26158683-26158921(+)$1	1	30	33	8.9999
.))	chr1:155106517-155106762(+)$1	1	110	113	8.9999
(((	chr14:69256598-69256867(-)$1	1	28	31	8.9999
.((	chr21:46894395-46894639(+)$1	1	154	157	8.9999
)))	chr2:128605333-128605614(-)$1	1	58	61	8.9999
(((	chr20:52198201-52198442(-)$1	1	37	40	8.9999
.))	chr20:31021123-31021364(+)$1	1	64	67	8.9999
.((	chr14:50235023-50235282(+)$1	1	14	17	8.9999
...	chr16:87364072-87364361(-)$1	1	83	86	8.9999
.((	chr1:156354114-156354361(+)$1	1	9	12	8.9999
.((	chr14:24105815-24106022(+)$1	1	98	101	8.9999
.((	chr5:180674188-180674442(+)$1	1	14	17	8.9999
(((	chr5:73930672-73930900(-)$1	1	28	31	8.9999
.((	chr19:42795150-42795432(+)$1	1	154	157	8.9999
)))	chr1:169454855-169455109(-)$1	1	237	240	8.9999
.(.	chr1:8074101-8074345(-)$1	1	166	169	8.9999
...	chr2:74730264-74730498(+)$1	1	18	21	8.9999
...	chr7:105517305-105517581(+)$1	1	12	15	8.9999
.))	chr20:22563710-22563955(-)$1	1	115	118	8.9999
...	chr17:56434899-56435146(-)$1	1	37	40	8.9999
.((	chr20:48808609-48808847(+)$1	1	48	51	8.9999
.((	chr12:115112349-115112593(-)$1	1	4	7	8.9999
...	chr15:80215398-80215658(-)$1	1	23	26	8.9999
)).	chr2:218668804-218669065(-)$1	1	143	146	8.9999
..(	chr16:22337050-22337308(+)$1	1	6	9	8.9999
.((	chr16:31719944-31720191(+)$1	1	59	62	8.9999
)))	chr12:46757419-46757662(-)$1	1	51	54	8.9999
(((	chr16:70406384-70406695(+)$1	1	84	87	8.9999
...	chr14:65405921-65406158(-)$1	1	1	4	8.9999
(((	chr7:100780738-100781028(+)$1	1	216	219	8.9999
.))	chr17:37884260-37884513(+)$1	1	59	62	8.9999
(((	chr1:12677592-12677822(-)$1	1	152	155	8.9999
.))	chr16:52580675-52580914(-)$1	1	22	25	8.9999
.((	chr15:50646628-50646924(-)$1	1	28	31	8.9999
((.	chr7:72984825-72985136(-)$1	1	61	64	8.9999
..)	chr10:21962437-21962684(+)$1	1	5	8	8.9999
)))	chr15:75500841-75501075(+)$1	1	9	12	8.9999
...	chr20:54978493-54978753(+)$1	1	3	6	8.9999
..(	chr12:89744583-89744816(-)$1	1	33	36	8.9999
.((	chr10:102743360-102743596(+)$1	1	13	16	8.9999
(((	chr2:43451680-43451895(-)$1	1	55	58	8.9999
(((	chr16:69362772-69363021(-)$1	1	2	5	8.9999
((.	chr4:124319078-124319356(+)$1	1	112	115	8.9999
(((	chr8:128752907-128753122(+)$1	1	6	9	8.9999
((.	chr14:31364548-31364791(-)$1	1	40	43	8.9999
..(	chr22:21800180-21800457(+)$1	1	31	34	8.9999
.))	chr20:34638425-34638638(-)$1	1	19	22	8.9999
.((	chr8:11695928-11696193(+)$1	1	4	7	8.9999
(((	chr2:64189204-64189518(-)$1	1	3	6	8.9999
.((	chr2:48573337-48573596(+)$1	1	51	54	8.9999
(((	chr19:13264766-13265008(+)$1	1	4	7	8.9999
.((	chr6:43738472-43738695(+)$1	1	1	4	8.9999
.))	chr17:80559299-80559545(+)$1	1	25	28	8.9999
.((	chr10:74034671-74034907(+)$1	1	30	33	8.9999
(..	chr6:33372993-33373239(+)$1	1	69	72	8.9999
(((	chr17:46128439-46128680(+)$1	1	15	18	8.9999
..(	chr1:234743965-234744224(-)$1	1	27	30	8.9999
(((	chr7:75703782-75704037(-)$1	1	2	5	8.9999
.((	chr14:21737441-21737654(-)$1	1	94	97	8.9999
(..	chr16:11931453-11931688(-)$1	1	88	91	8.9999
(((	chr2:75720566-75720807(-)$1	1	81	84	8.9999
(((	chr20:58513819-58514100(-)$1	1	13	16	8.9999
(((	chr3:30713063-30713311(+)$1	1	77	80	8.9999
(((	chr12:12870382-12870648(+)$1	1	57	60	8.9999
((.	chr11:46741614-46741854(+)$1	1	2	5	8.9999
(((	chr5:177658520-177658824(-)$1	1	43	46	8.9999
...	chr2:232326625-232326829(-)$1	1	145	148	8.9999
..)	chr17:48796939-48797193(+)$1	1	65	68	8.9999
.))	chr1:61554296-61554554(+)$1	1	51	54	8.9999
(((	chr21:34923015-34923267(+)$1	1	2	5	8.9999
(.(	chr7:5427220-5427462(-)$1	1	130	133	8.9999
...	chr3:186506963-186507216(+)$1	1	231	234	8.9999
...	chr3:32859626-32859925(+)$1	1	199	202	8.9999
.))	chr16:24551579-24551832(+)$1	1	66	69	8.9999
.((	chr6:15246607-15246900(+)$1	1	123	126	8.9999
((.	chr4:124323186-124323438(+)$1	1	29	32	8.9999
.((	chr20:377273-377510(+)$1	1	15	18	8.9999
...	chr5:137802441-137802705(+)$1	1	63	66	8.9999
(((	chr15:75502984-75503230(+)$1	1	15	18	8.9999
(((	chr4:103747661-103747938(-)$1	1	8	11	8.9999
..)	chr20:3765622-3765863(-)$1	1	128	131	8.9999
(((	chr1:205589675-205590002(-)$1	1	168	171	8.9999
.))	chr2:42556983-42557237(+)$1	1	45	48	8.9999
..(	chr6:1312835-1313087(+)$1	1	42	45	8.9999
(((	chr14:21167459-21167759(+)$1	1	141	144	8.9999

#PSSM
A : 0.94	a : 0.05	
G : 0.94	g : 0.05	
C : 0.93	c : 0.06	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_transcript_m3_run2.nuc.txt

#NT
GGGGGGGAG	chr16:89467340-89467588(-)$1	248	87	96	11.7540
AGAAGGAAG	chr8:94752512-94752787(-)$1	275	200	209	11.4262
AGAGGGGCG	chr8:144673829-144674081(-)$1	252	122	131	14.2950
AGUGGAGAG	chr18:75695202-75695469(-)$1	267	98	107	10.8524
AAAGGUGAG	chr2:3324916-3325150(-)$1	234	134	143	10.8524
AGAGAGGAA	chr2:3326608-3326868(-)$1	260	0	9	10.9344
agaggcggg	chr16:89027037-89027264(-)$1	227	108	117	11.0983
aggggguag	chr7:2080517-2080789(-)$1	272	105	114	10.8524
AGAGGGCAG	chr7:1892279-1892527(-)$1	248	71	80	14.6229
agagggcug	chr19:5080926-5081243(+)$1	317	130	139	10.6885
ACAGGGGAG	chr16:87733212-87733515(-)$1	303	148	157	14.4590
ACAGGGUAG	chr17:46697741-46697992(-)$1	251	72	81	10.8524
AGAGCCGAG	chr16:89347086-89347350(-)$1	264	83	92	10.9344
AGAGGUGAC	chr22:49949329-49949606(-)$1	277	128	137	10.5245
AGAGGGGCU	chr9:134350836-134351116(+)$1	280	128	137	10.1147
GGAGGGGAG	chr1:245026478-245026732(-)$1	254	195	204	15.4426
GCAGGGGAG	chr20:62551483-62551768(+)$1	285	48	57	11.7540
GGAGGGGGG	chr19:5078569-5078807(+)$1	238	96	105	11.8360
GGAGAGGAG	chr12:6690109-6690325(-)$1	216	46	55	12.2459
aggugggag	chr22:20836649-20836924(-)$1	275	129	138	10.5245
GGUGGGGAG	chr8:58118171-58118430(+)$1	259	181	190	11.6721
AAAGGGGUG	chr17:78887726-78888012(+)$1	286	163	172	10.3606
AGAGUGAAG	chr8:94752685-94752943(-)$1	258	59	68	11.7540
AGAGGGAGG	chr16:1366318-1366598(+)$1	280	40	49	11.5901
aggguggag	chr16:1805970-1806255(+)$1	285	33	42	11.0163
AGAGAGGAG	chr22:49942354-49942604(-)$1	250	224	233	14.9508
AGCGGGAAG	chr4:1227310-1227555(-)$1	245	33	42	11.2622
AGGGGGGGG	chr1:2214702-2215056(+)$1	354	85	94	10.8524
UGAUGGGAG	chr16:89465246-89465497(-)$1	251	107	116	10.6065
ACAGAGGAG	chr19:49377468-49377731(+)$1	263	210	219	11.2622
AGAGGGGAC	chr22:49942691-49942949(-)$1	258	142	151	13.9672
AGAGGGGAG	chr9:134349890-134350156(+)$1	266	23	32	18.1475
AGAAGAGAG	chr11:71726054-71726329(-)$1	275	54	63	10.8524
UGAGGUGAG	chr17:27023909-27024175(+)$1	266	187	196	11.0983
AGAGAGCAG	chr2:3475905-3476149(+)$1	244	38	47	11.4262
acaguggag	chr16:1368597-1368850(+)$1	253	227	236	11.0163
GGAGGUGAG	chr16:89450096-89450372(-)$1	276	40	49	12.0000
AAAGGAGAG	chr11:62294489-62294767(-)$1	278	79	88	10.7704
AGAGUGAAG	chr16:88993271-88993534(-)$1	263	13	22	11.7540
AGCGGGGAG	chr19:2270127-2270364(+)$1	237	200	209	14.2131
AGAGGGGAG	chr22:49896530-49896822(-)$1	292	95	104	18.1475
gaaggggag	chr22:49939732-49939983(-)$1	251	80	89	11.5901
GGAGGCGAG	chr22:49854530-49854782(-)$1	252	225	234	12.0000
ggagggggg	chr13:92000169-92000431(+)$1	262	245	254	11.8360
agagaugag	chr2:3326005-3326250(-)$1	245	143	152	11.5081
AGAAGGGAA	chr10:71148852-71149104(+)$1	252	230	239	10.3606
GGAAGGGAG	chr19:1408464-1408710(+)$1	246	196	205	11.6721
AGAGUGGAU	chr18:75687918-75688143(-)$1	225	175	184	10.5245
AGACGGGAA	chr5:293048-293363(+)$1	315	304	313	10.1147
AGAGGCGAG	chr21:9922209-9922445(-)$1	236	193	202	14.7049
AGUUGGGAG	chr22:49957878-49958135(-)$1	257	202	211	10.4426
GGAGGGGAA	chr12:133353498-133353772(-)$1	274	102	111	11.4262
AGAGAGAAG	chr16:1369405-1369664(+)$1	259	186	195	12.0000
ACAGAGGAG	chr10:133761822-133762129(+)$1	307	116	125	11.2622
AGAAGGAAG	chr5:71491431-71491669(+)$1	238	32	41	11.4262
AGACGGGAG	chr16:87735153-87735409(-)$1	256	9	18	14.1311
AGAGGGACG	chr16:89040131-89040418(-)$1	287	4	13	11.3442
AGAGGGAGG	chr7:1893067-1893316(-)$1	249	19	28	11.5901
GGUGGGGAG	chr16:87740384-87740673(-)$1	289	88	97	11.6721
AGAGGCGAG	chr21:9922145-9922409(-)$1	264	157	166	14.7049

#otherMatches

#Struct PSSM
iiiiii22d	chr16:89002571-89002868(-)$1	297	148	157	11.6721
JJJJJJJ::	chr16:89467340-89467588(-)$1	248	87	96	11.7540
dd666666c	chr8:94752512-94752787(-)$1	275	200	209	11.4262
$$ffffff!	chr8:144673829-144674081(-)$1	252	122	131	14.2950
33ccceeee	chr18:75695202-75695469(-)$1	267	98	107	10.8524
''''ggggg	chr2:3324916-3325150(-)$1	234	134	143	10.8524
::BB{BBKK	chr2:3326608-3326868(-)$1	260	0	9	10.9344
:::a[ffff	chr16:89027037-89027264(-)$1	227	108	117	11.0983
ee]ccc::D	chr7:2080517-2080789(-)$1	272	105	114	10.8524
bb]dddd22	chr7:1892279-1892527(-)$1	248	71	80	14.6229
c666666ee	chr19:5080926-5081243(+)$1	317	130	139	10.6885
ffffff!!c	chr16:87733212-87733515(-)$1	303	148	157	14.4590
[ffffff!!	chr17:46697741-46697992(-)$1	251	72	81	10.8524
dd!!ccc[a	chr16:89347086-89347350(-)$1	264	83	92	10.9344
DDDD::::d	chr22:49949329-49949606(-)$1	277	128	137	10.5245
ooobbcccd	chr9:134350836-134351116(+)$1	280	128	137	10.1147
"""ddddnn	chr1:245026478-245026732(-)$1	254	195	204	15.4426
FFFFFFLLL	chr20:62551483-62551768(+)$1	285	48	57	11.7540
iiiiiiii:	chr19:5078569-5078807(+)$1	238	96	105	11.8360
f]bb]bb::	chr12:6690109-6690325(-)$1	216	46	55	12.2459
dddd!!ccc	chr22:20836649-20836924(-)$1	275	129	138	10.5245
]bb]bb22a	chr8:58118171-58118430(+)$1	259	181	190	11.6721
:::::::bb	chr17:78887726-78888012(+)$1	286	163	172	10.3606
pppppphhh	chr8:94752685-94752943(-)$1	258	59	68	11.7540
mccc:::==	chr16:1366318-1366598(+)$1	280	40	49	11.5901
hhhhhhhqq	chr16:1805970-1806255(+)$1	285	33	42	11.0163
cc[ccclll	chr22:49942354-49942604(-)$1	250	224	233	14.9508
{BBCCCKKB	chr4:1227310-1227555(-)$1	245	33	42	11.2622
CC:GGGGGG	chr1:2214702-2215056(+)$1	354	85	94	10.8524
DKKCCCKKC	chr16:89465246-89465497(-)$1	251	107	116	10.6065
hh22bb]ee	chr19:49377468-49377731(+)$1	263	210	219	11.2622
mbbbbbb[c	chr22:49942691-49942949(-)$1	258	142	151	13.9672
===!!a!!e	chr9:134349890-134350156(+)$1	266	23	32	18.1475
>>>>>>>>>	chr11:71726054-71726329(-)$1	275	54	63	10.8524
}A}CCC~~~	chr17:27023909-27024175(+)$1	266	187	196	11.0983
rrrrrrrre	chr2:3475905-3476149(+)$1	244	38	47	11.4262
33eeeee44	chr16:1368597-1368850(+)$1	253	227	236	11.0163
ffffff22d	chr16:89450096-89450372(-)$1	276	40	49	12.0000
55ccc]eee	chr11:62294489-62294767(-)$1	278	79	88	10.7704
::::::::b	chr16:88993271-88993534(-)$1	263	13	22	11.7540
mdddd]a]f	chr19:2270127-2270364(+)$1	237	200	209	14.2131
::::::::c	chr22:49896530-49896822(-)$1	292	95	104	18.1475
mmmmbb333	chr22:49939732-49939983(-)$1	251	80	89	11.5901
BYYCCCZZZ	chr22:49854530-49854782(-)$1	252	225	234	12.0000
GGGGGGG}B	chr13:92000169-92000431(+)$1	262	245	254	11.8360
gggg:dddd	chr2:3326005-3326250(-)$1	245	143	152	11.5081
nnnhhhhhh	chr10:71148852-71149104(+)$1	252	230	239	10.3606
fffff[aqq	chr19:1408464-1408710(+)$1	246	196	205	11.6721
ccqqqqqqq	chr18:75687918-75688143(-)$1	225	175	184	10.5245
:GGGGGGG:	chr5:293048-293363(+)$1	315	304	313	10.1147
mmmmcccCC	chr21:9922209-9922445(-)$1	236	193	202	14.7049
ppccc22ii	chr22:49957878-49958135(-)$1	257	202	211	10.4426
=========	chr12:133353498-133353772(-)$1	274	102	111	11.4262
^^^^^^^^^	chr16:1369405-1369664(+)$1	259	186	195	12.0000
:ffffff[b	chr10:133761822-133762129(+)$1	307	116	125	11.2622
nnnnbb:gg	chr5:71491431-71491669(+)$1	238	32	41	11.4262
e!!bb"""a	chr16:87735153-87735409(-)$1	256	9	18	14.1311
[dddd!!ao	chr16:89040131-89040418(-)$1	287	4	13	11.3442
####a[a[b	chr7:1893067-1893316(-)$1	249	19	28	11.5901
IIIIIIIII	chr16:87740384-87740673(-)$1	289	88	97	11.6721
mmmmcccCC	chr21:9922145-9922409(-)$1	264	157	166	14.7049

#DB
))))))..)	chr16:89002571-89002868(-)$1	1	148	157	11.6721
(((((((..	chr16:89467340-89467588(-)$1	1	87	96	11.7540
))......)	chr8:94752512-94752787(-)$1	1	200	209	11.4262
..((((((.	chr8:144673829-144674081(-)$1	1	122	131	14.2950
..)))))))	chr18:75695202-75695469(-)$1	1	98	107	10.8524
....(((((	chr2:3324916-3325150(-)$1	1	134	143	10.8524
..((.((..	chr2:3326608-3326868(-)$1	1	0	9	10.9344
...(.((((	chr16:89027037-89027264(-)$1	1	108	117	11.0983
)).)))..)	chr7:2080517-2080789(-)$1	1	105	114	10.8524
)).))))..	chr7:1892279-1892527(-)$1	1	71	80	14.6229
)......))	chr19:5080926-5081243(+)$1	1	130	139	10.6885
((((((..(	chr16:87733212-87733515(-)$1	1	148	157	14.4590
.((((((..	chr17:46697741-46697992(-)$1	1	72	81	10.8524
((..(((.(	chr16:89347086-89347350(-)$1	1	83	92	10.9344
((((....(	chr22:49949329-49949606(-)$1	1	128	137	10.5245
...)))))(	chr9:134350836-134351116(+)$1	1	128	137	10.1147
...((((..	chr1:245026478-245026732(-)$1	1	195	204	15.4426
((((((...	chr20:62551483-62551768(+)$1	1	48	57	11.7540
)))))))).	chr19:5078569-5078807(+)$1	1	96	105	11.8360
).)).))..	chr12:6690109-6690325(-)$1	1	46	55	12.2459
((((..(((	chr22:20836649-20836924(-)$1	1	129	138	10.5245
.)).))..)	chr8:58118171-58118430(+)$1	1	181	190	11.6721
.......((	chr17:78887726-78888012(+)$1	1	163	172	10.3606
......)))	chr8:94752685-94752943(-)$1	1	59	68	11.7540
.)))...((	chr16:1366318-1366598(+)$1	1	40	49	11.5901
(((((((..	chr16:1805970-1806255(+)$1	1	33	42	11.0163
((.(((...	chr22:49942354-49942604(-)$1	1	224	233	14.9508
.(((((..(	chr4:1227310-1227555(-)$1	1	33	42	11.2622
((.((((((	chr1:2214702-2215056(+)$1	1	85	94	10.8524
(..(((..(	chr16:89465246-89465497(-)$1	1	107	116	10.6065
))..)).))	chr19:49377468-49377731(+)$1	1	210	219	11.2622
.))((((.(	chr22:49942691-49942949(-)$1	1	142	151	13.9672
(((..(..(	chr9:134349890-134350156(+)$1	1	23	32	18.1475
.........	chr11:71726054-71726329(-)$1	1	54	63	10.8524
.).)))...	chr17:27023909-27024175(+)$1	1	187	196	11.0983
........)	chr2:3475905-3476149(+)$1	1	38	47	11.4262
..)))))..	chr16:1368597-1368850(+)$1	1	227	236	11.0163
))))))..)	chr16:89450096-89450372(-)$1	1	40	49	12.0000
..))).)))	chr11:62294489-62294767(-)$1	1	79	88	10.7704
........(	chr16:88993271-88993534(-)$1	1	13	22	11.7540
.)))).).)	chr19:2270127-2270364(+)$1	1	200	209	14.2131
........(	chr22:49896530-49896822(-)$1	1	95	104	18.1475
....))...	chr22:49939732-49939983(-)$1	1	80	89	11.5901
)..)))...	chr22:49854530-49854782(-)$1	1	225	234	12.0000
))))))).)	chr13:92000169-92000431(+)$1	1	245	254	11.8360
)))).((((	chr2:3326005-3326250(-)$1	1	143	152	11.5081
...))))))	chr10:71148852-71149104(+)$1	1	230	239	10.3606
(((((.(..	chr19:1408464-1408710(+)$1	1	196	205	11.6721
((.......	chr18:75687918-75688143(-)$1	1	175	184	10.5245
.))))))).	chr5:293048-293363(+)$1	1	304	313	10.1147
....)))))	chr21:9922209-9922445(-)$1	1	193	202	14.7049
..)))..))	chr22:49957878-49958135(-)$1	1	202	211	10.4426
)))))))))	chr12:133353498-133353772(-)$1	1	102	111	11.4262
.........	chr16:1369405-1369664(+)$1	1	186	195	12.0000
.((((((.(	chr10:133761822-133762129(+)$1	1	116	125	11.2622
....)).((	chr5:71491431-71491669(+)$1	1	32	41	11.4262
(..((...(	chr16:87735153-87735409(-)$1	1	9	18	14.1311
.((((..(.	chr16:89040131-89040418(-)$1	1	4	13	11.3442
....(.(.(	chr7:1893067-1893316(-)$1	1	19	28	11.5901
(((((((((	chr16:87740384-87740673(-)$1	1	88	97	11.6721
....)))))	chr21:9922145-9922409(-)$1	1	157	166	14.7049

#PSSM
A : 0.63	G : 0.18	a : 0.11	U : 0.03	g : 0.03	
G : 0.72	g : 0.11	C : 0.08	A : 0.04	c : 0.01	a : 0.01	
A : 0.72	a : 0.09	U : 0.06	g : 0.04	G : 0.03	C : 0.03	
G : 0.70	g : 0.13	A : 0.08	U : 0.03	C : 0.03	u : 0.01	
G : 0.67	A : 0.11	g : 0.09	U : 0.04	u : 0.03	C : 0.01	a : 0.01	
G : 0.65	g : 0.11	A : 0.06	U : 0.06	C : 0.06	c : 0.01	u : 0.01	
G : 0.63	A : 0.16	g : 0.11	C : 0.03	u : 0.01	c : 0.01	U : 0.01	
A : 0.72	a : 0.09	G : 0.06	C : 0.04	g : 0.03	u : 0.01	U : 0.01	
G : 0.72	g : 0.14	A : 0.06	C : 0.03	U : 0.03	

#score	730.7704918032792
#seq	61
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_UTR_m3_run2.nuc.txt

#NT
CCGGGCC	chr3:113464485-113464767(-)$1	282	26	33	13.1428
CAGGGCC	chr9:117027109-117027320(+)$1	211	91	98	13.1428
CUGUGCC	chr20:61439026-61439264(+)$1	238	29	36	13.3015
CUGUGCC	chr17:73699347-73699675(+)$1	328	67	74	13.3015
CUGGCCC	chr2:220363601-220363850(+)$1	249	143	150	13.8571
CGGGGCC	chr1:150946991-150947236(-)$1	245	66	73	13.4603
CUGGGCC	chr11:74303682-74304014(+)$1	332	124	131	17.1904
CAGGGCC	chr17:80054222-80054514(-)$1	292	15	22	13.1428
GUGGGCC	chr1:146714436-146714697(+)$1	261	122	129	13.1428
CUGGGCA	chr11:65427582-65427842(-)$1	260	91	98	13.1428
cugggcg	chr8:144911102-144911351(-)$1	249	138	145	13.1428
CUGGGCC	chr10:102729235-102729492(+)$1	257	213	220	17.1904
GUGGGCC	chr2:101618880-101619185(+)$1	305	140	147	13.1428
CUGGCCC	chr17:37899313-37899575(+)$1	262	165	172	13.8571
CUGGCCC	chr1:1447799-1448077(+)$1	278	117	124	13.8571
CUGGGCG	chr8:30242608-30242857(+)$1	249	69	76	13.1428
CUGGGCC	chr14:23790784-23791052(+)$1	268	150	157	17.1904
CUGGGCC	chr9:34646917-34647189(+)$1	272	39	46	17.1904
CUGGGCC	chr14:23776096-23776349(+)$1	253	72	79	17.1904
CUGCGCC	chr17:79479460-79479727(-)$1	267	9	16	13.1428
CUGGGCC	chr19:13059984-13060235(+)$1	251	208	215	17.1904
CUGGGCC	chr16:89882362-89882619(-)$1	257	28	35	17.1904
UUGGGCC	chr7:99951363-99951629(+)$1	266	24	31	12.9841
UUGGGCC	chr20:61557666-61557909(-)$1	243	169	176	12.9841
CUGGUCC	chr3:48671033-48671270(-)$1	237	126	133	13.2222
CUGGGCU	chr2:101618667-101618927(+)$1	260	130	137	13.1428
GUGGGCC	chr16:89811345-89811588(-)$1	243	1	8	13.1428
CUGGGCU	chr11:47187824-47188092(-)$1	268	121	128	13.1428
CUGGGCC	chr19:17970738-17971079(+)$1	341	237	244	17.1904
CUGGCCC	chr17:40715042-40715311(+)$1	269	246	253	13.8571
CUGGGCC	chr3:38178046-38178330(-)$1	284	273	280	17.1904
CUGCGCC	chr8:144679178-144679506(-)$1	328	67	74	13.1428
AUGGGCC	chr13:50571223-50571538(+)$1	315	219	226	12.9841
GUGGGCC	chr6:31937124-31937429(+)$1	305	57	64	13.1428
CUGGGCU	chr16:16255120-16255416(-)$1	296	142	149	13.1428
CUGGGCC	chr15:52860721-52861092(-)$1	371	70	77	17.1904
CUGUGCC	chr14:24761481-24761788(-)$1	307	272	279	13.3015
CUGGACC	chr17:61904804-61905160(+)$1	356	179	186	13.3015
CUGGCCC	chr2:29117895-29118127(+)$1	232	131	138	13.8571
CUgggcc	chr17:42401898-42402130(-)$1	232	62	69	17.1904
CUGGGCC	chr19:41770620-41770898(+)$1	278	121	128	17.1904
CUGUGCC	chr17:27073840-27074065(+)$1	225	165	172	13.3015
CUGGGCG	chr11:563421-563703(+)$1	282	7	14	13.1428
CUGGGCC	chr3:47459863-47460124(-)$1	261	122	129	17.1904
CUGGCCC	chr9:117031399-117031674(+)$1	275	77	84	13.8571
CUGGCCC	chr7:100160044-100160372(+)$1	328	105	112	13.8571
CUGGGCA	chr6:43480326-43480571(-)$1	245	78	85	13.1428
CCGGGCC	chr9:116999853-117000108(+)$1	255	122	129	13.1428
CUGGGCA	chr17:73839661-73839944(-)$1	283	131	138	13.1428
CUGGGCC	chr18:77711416-77711698(-)$1	282	274	281	17.1904
AUGGGCC	chr5:176980287-176980569(-)$1	282	108	115	12.9841
CGGGGCC	chr17:79479577-79479848(-)$1	271	104	111	13.4603
CUGGGCC	chr17:80408287-80408617(-)$1	330	136	143	17.1904
CUGUGCC	chr17:80441919-80442154(+)$1	235	73	80	13.3015
CUGGCCC	chr16:84215348-84215621(-)$1	273	128	135	13.8571
CUGCGCC	chr2:114513664-114513970(-)$1	306	189	196	13.1428
CUGAGCC	chr6:43267520-43267782(+)$1	262	62	69	12.9841
CUGGCCC	chr1:53377173-53377494(-)$1	321	181	188	13.8571
CGGGGCC	chr19:14529804-14530070(-)$1	266	10	17	13.4603
cggggcc	chr20:17949156-17949442(-)$1	286	269	276	13.4603
CGGGGCC	chr3:44518913-44519165(-)$1	252	181	188	13.4603
CGGGGCC	chr14:75348618-75348916(+)$1	298	118	125	13.4603

#otherMatches

#Struct PSSM
bb[cccm	chr17:57232293-57232556(-)$1	263	168	175	13.3015
hhhhhhh	chr3:113464485-113464767(-)$1	282	26	33	13.1428
]ddddff	chr9:117027109-117027320(+)$1	211	91	98	13.1428
=======	chr20:61439026-61439264(+)$1	238	29	36	13.3015
FFFFFFK	chr17:73699347-73699675(+)$1	328	67	74	13.3015
=======	chr2:220363601-220363850(+)$1	249	143	150	13.8571
e4444dd	chr1:150946991-150947236(-)$1	245	66	73	13.4603
GG:dddd	chr11:74303682-74304014(+)$1	332	124	131	17.1904
MMA{EEE	chr17:80054222-80054514(-)$1	292	15	22	13.1428
ffflllf	chr1:146714436-146714697(+)$1	261	122	129	13.1428
FFFFFNN	chr11:65427582-65427842(-)$1	260	91	98	13.1428
f:ccc[a	chr8:144911102-144911351(-)$1	249	138	145	13.1428
bdddd22	chr10:102729235-102729492(+)$1	257	213	220	17.1904
bb[eeee	chr2:101618880-101619185(+)$1	305	140	147	13.1428
JJJJJJJ	chr17:37899313-37899575(+)$1	262	165	172	13.8571
iiiiiii	chr1:1447799-1448077(+)$1	278	117	124	13.8571
2ccc]a]	chr8:30242608-30242857(+)$1	249	69	76	13.1428
ee[dddd	chr14:23790784-23791052(+)$1	268	150	157	17.1904
DDDDDDJ	chr9:34646917-34647189(+)$1	272	39	46	17.1904
DDFFFFF	chr14:23776096-23776349(+)$1	253	72	79	17.1904
FFKKDDD	chr17:79479460-79479727(-)$1	267	9	16	13.1428
gDDDD}D	chr19:13059984-13060235(+)$1	251	208	215	17.1904
cccbb[d	chr16:89882362-89882619(-)$1	257	28	35	17.1904
ddd[ccc	chr7:99951363-99951629(+)$1	266	24	31	12.9841
e####dd	chr20:61557666-61557909(-)$1	243	169	176	12.9841
22fffff	chr3:48671033-48671270(-)$1	237	126	133	13.2222
eeeemmm	chr2:101618667-101618927(+)$1	260	130	137	13.1428
CC{EEEE	chr16:89811345-89811588(-)$1	243	1	8	13.1428
bcccbb]	chr11:47187824-47188092(-)$1	268	121	128	13.1428
ccclllc	chr19:17970738-17971079(+)$1	341	237	244	17.1904
eeellle	chr17:40715042-40715311(+)$1	269	246	253	13.8571
GGGGA}E	chr3:38178046-38178330(-)$1	284	273	280	17.1904
clllccc	chr8:144679178-144679506(-)$1	328	67	74	13.1428
OODDDDE	chr13:50571223-50571538(+)$1	315	219	226	12.9841
cc]eeee	chr6:31937124-31937429(+)$1	305	57	64	13.1428
tddddcc	chr16:16255120-16255416(-)$1	296	142	149	13.1428
fff]bbb	chr15:52860721-52861092(-)$1	371	70	77	17.1904
ggeeeee	chr14:24761481-24761788(-)$1	307	272	279	13.3015
ooooccc	chr17:61904804-61905160(+)$1	356	179	186	13.3015
iiiiddd	chr2:29117895-29118127(+)$1	232	131	138	13.8571
ffffff]	chr17:42401898-42402130(-)$1	232	62	69	17.1904
cc+++++	chr19:41770620-41770898(+)$1	278	121	128	17.1904
ccc[ddd	chr17:27073840-27074065(+)$1	225	165	172	13.3015
FFFFFFK	chr11:563421-563703(+)$1	282	7	14	13.1428
nnnnccc	chr3:47459863-47460124(-)$1	261	122	129	17.1904
ffCCCEE	chr9:117031399-117031674(+)$1	275	77	84	13.8571
qqqccch	chr7:100160044-100160372(+)$1	328	105	112	13.8571
::DDDDM	chr6:43480326-43480571(-)$1	245	78	85	13.1428
f22ccc]	chr9:116999853-117000108(+)$1	255	122	129	13.1428
fffff!!	chr17:73839661-73839944(-)$1	283	131	138	13.1428
eee]bb:	chr18:77711416-77711698(-)$1	282	274	281	17.1904
:::ffff	chr5:176980287-176980569(-)$1	282	108	115	12.9841
ffffffb	chr17:79479577-79479848(-)$1	271	104	111	13.4603
~~JJJJJ	chr17:80408287-80408617(-)$1	330	136	143	17.1904
DDD:ccc	chr17:80441919-80442154(+)$1	235	73	80	13.3015
diiiiii	chr16:84215348-84215621(-)$1	273	128	135	13.8571
nnnnbbb	chr2:114513664-114513970(-)$1	306	189	196	13.1428
bbbbnnn	chr6:43267520-43267782(+)$1	262	62	69	12.9841
fffff22	chr1:53377173-53377494(-)$1	321	181	188	13.8571
LEEEEEB	chr19:14529804-14530070(-)$1	266	10	17	13.4603
JJJJJJJ	chr20:17949156-17949442(-)$1	286	269	276	13.4603
fgggggg	chr3:44518913-44519165(-)$1	252	181	188	13.4603
FFFFFF~	chr14:75348618-75348916(+)$1	298	118	125	13.4603

#DB
((.(((.	chr17:57232293-57232556(-)$1	1	168	175	13.3015
)))))))	chr3:113464485-113464767(-)$1	1	26	33	13.1428
.))))))	chr9:117027109-117027320(+)$1	1	91	98	13.1428
(((((((	chr20:61439026-61439264(+)$1	1	29	36	13.3015
((((((.	chr17:73699347-73699675(+)$1	1	67	74	13.3015
(((((((	chr2:220363601-220363850(+)$1	1	143	150	13.8571
)....))	chr1:150946991-150947236(-)$1	1	66	73	13.4603
((.((((	chr11:74303682-74304014(+)$1	1	124	131	17.1904
..(.(((	chr17:80054222-80054514(-)$1	1	15	22	13.1428
(((...)	chr1:146714436-146714697(+)$1	1	122	129	13.1428
(((((..	chr11:65427582-65427842(-)$1	1	91	98	13.1428
).(((.(	chr8:144911102-144911351(-)$1	1	138	145	13.1428
)))))..	chr10:102729235-102729492(+)$1	1	213	220	17.1904
((.((((	chr2:101618880-101619185(+)$1	1	140	147	13.1428
)))))))	chr17:37899313-37899575(+)$1	1	165	172	13.8571
)))))))	chr1:1447799-1448077(+)$1	1	117	124	13.8571
.))).).	chr8:30242608-30242857(+)$1	1	69	76	13.1428
((.((((	chr14:23790784-23791052(+)$1	1	150	157	17.1904
(((((((	chr9:34646917-34647189(+)$1	1	39	46	17.1904
(((((((	chr14:23776096-23776349(+)$1	1	72	79	17.1904
((..(((	chr17:79479460-79479727(-)$1	1	9	16	13.1428
))))).)	chr19:13059984-13060235(+)$1	1	208	215	17.1904
(((((.(	chr16:89882362-89882619(-)$1	1	28	35	17.1904
(((.(((	chr7:99951363-99951629(+)$1	1	24	31	12.9841
(....((	chr20:61557666-61557909(-)$1	1	169	176	12.9841
..)))))	chr3:48671033-48671270(-)$1	1	126	133	13.2222
((((...	chr2:101618667-101618927(+)$1	1	130	137	13.1428
((.((((	chr16:89811345-89811588(-)$1	1	1	8	13.1428
)))))).	chr11:47187824-47188092(-)$1	1	121	128	13.1428
(((...)	chr19:17970738-17971079(+)$1	1	237	244	17.1904
(((...)	chr17:40715042-40715311(+)$1	1	246	253	13.8571
))))).)	chr3:38178046-38178330(-)$1	1	273	280	17.1904
(...)))	chr8:144679178-144679506(-)$1	1	67	74	13.1428
..(((((	chr13:50571223-50571538(+)$1	1	219	226	12.9841
)).))))	chr6:31937124-31937429(+)$1	1	57	64	13.1428
.))))))	chr16:16255120-16255416(-)$1	1	142	149	13.1428
))).))(	chr15:52860721-52861092(-)$1	1	70	77	17.1904
(((((((	chr14:24761481-24761788(-)$1	1	272	279	13.3015
....)))	chr17:61904804-61905160(+)$1	1	179	186	13.3015
))))(((	chr2:29117895-29118127(+)$1	1	131	138	13.8571
)))))).	chr17:42401898-42402130(-)$1	1	62	69	17.1904
((.....	chr19:41770620-41770898(+)$1	1	121	128	17.1904
(((.(((	chr17:27073840-27074065(+)$1	1	165	172	13.3015
((((((.	chr11:563421-563703(+)$1	1	7	14	13.1428
....)))	chr3:47459863-47460124(-)$1	1	122	129	17.1904
))(((((	chr9:117031399-117031674(+)$1	1	77	84	13.8571
...))))	chr7:100160044-100160372(+)$1	1	105	112	13.8571
..((((.	chr6:43480326-43480571(-)$1	1	78	85	13.1428
)..))).	chr9:116999853-117000108(+)$1	1	122	129	13.1428
(((((..	chr17:73839661-73839944(-)$1	1	131	138	13.1428
))).)).	chr18:77711416-77711698(-)$1	1	274	281	17.1904
...((((	chr5:176980287-176980569(-)$1	1	108	115	12.9841
)))))))	chr17:79479577-79479848(-)$1	1	104	111	13.4603
..)))))	chr17:80408287-80408617(-)$1	1	136	143	17.1904
(((.(((	chr17:80441919-80442154(+)$1	1	73	80	13.3015
(((((((	chr16:84215348-84215621(-)$1	1	128	135	13.8571
....)))	chr2:114513664-114513970(-)$1	1	189	196	13.1428
((((...	chr6:43267520-43267782(+)$1	1	62	69	12.9841
)))))..	chr1:53377173-53377494(-)$1	1	181	188	13.8571
.((((((	chr19:14529804-14530070(-)$1	1	10	17	13.4603
)))))))	chr20:17949156-17949442(-)$1	1	269	276	13.4603
)))))))	chr3:44518913-44519165(-)$1	1	181	188	13.4603
)))))).	chr14:75348618-75348916(+)$1	1	118	125	13.4603

#PSSM
C : 0.84	G : 0.06	c : 0.03	U : 0.03	A : 0.03	
U : 0.82	G : 0.07	C : 0.03	A : 0.03	u : 0.01	g : 0.01	
G : 0.95	g : 0.04	
G : 0.80	U : 0.07	g : 0.04	C : 0.04	A : 0.01	
G : 0.76	C : 0.14	g : 0.04	A : 0.03	U : 0.01	
C : 0.95	c : 0.04	
C : 0.82	A : 0.04	U : 0.04	G : 0.03	c : 0.03	g : 0.01	

#score	897.4444444444431
#seq	63
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_transcript_m1_run2.nuc.txt

#NT
ccuuggg	chr4:155506417-155506649(-)$1	232	123	130	12.7187
CCCGGGG	chr16:697330-697578(+)$1	248	4	11	12.5625
CCCUGGA	chr17:31267911-31268157(+)$1	246	143	150	13.2656
CCCUGGA	chr1:154248034-154248311(+)$1	277	81	88	13.2656
CCCUGAG	chr19:12841484-12841719(-)$1	235	27	34	12.7968
CCCUGGG	chr11:62393080-62393355(-)$1	275	223	230	16.9375
CCCUGGG	chr3:183901391-183901660(+)$1	269	188	195	16.9375
CACUGGG	chr9:140137947-140138194(+)$1	247	71	78	12.7968
CCCUGUG	chr22:41349453-41349726(+)$1	273	0	7	13.2656
GCCUGGG	chr17:72764917-72765146(+)$1	229	143	150	12.9531
ACCUGGG	chr16:31105944-31106185(-)$1	241	144	151	12.8750
UCCUGGG	chr21:45402809-45403047(+)$1	238	52	59	12.7968
CCUUGGG	chr5:176524694-176524945(+)$1	251	20	27	12.7187
CCCUCGG	chr14:105954736-105954953(+)$1	217	157	164	12.2500
CCCUGGG	chr7:99564596-99564850(-)$1	254	207	214	16.9375
CCCUGGG	chr1:43392575-43392803(-)$1	228	66	73	16.9375
GCCUGGG	chr19:50310068-50310363(+)$1	295	64	71	12.9531
CCUUGGG	chr21:43732203-43732478(-)$1	275	34	41	12.7187
CACUGGG	chr20:31611153-31611378(+)$1	225	44	51	12.7968
CCCUGGC	chr19:36640908-36641276(+)$1	368	23	30	13.1093
CACUGGG	chr11:116706629-116706835(-)$1	206	7	14	12.7968
CCCUGGA	chr6:31625790-31626053(+)$1	263	4	11	13.2656
CCCUGGA	chr5:149825121-149825349(-)$1	228	110	117	13.2656
CCCCGGG	chr1:180166381-180166652(+)$1	271	21	28	12.7968
CCCUGUG	chr7:150037549-150037796(-)$1	247	123	130	13.2656
CCCUGGU	chr19:39923861-39924089(-)$1	228	137	144	12.8750
CCCUGGG	chr5:85913716-85914044(+)$1	328	221	228	16.9375
cccuggg	chr19:56154318-56154641(+)$1	323	187	194	16.9375
GCCUGGG	chr11:764232-764533(+)$1	301	252	259	12.9531
CCCUGGG	chr16:3072139-3072376(+)$1	237	76	83	16.9375
CCCUGUG	chr2:232319818-232320079(-)$1	261	15	22	13.2656
CCUUGGG	chr14:103396930-103397206(+)$1	276	106	113	12.7187
CCCCGGG	chr20:61913110-61913368(+)$1	258	93	100	12.7968
CCCUGGG	chr11:66043959-66044203(+)$1	244	218	225	16.9375
CACUGGG	chr22:39130850-39131136(-)$1	286	87	94	12.7968
CCCUGUG	chr12:132569311-132569659(+)$1	348	99	106	13.2656
CCCUGUG	chr15:80478370-80478749(+)$1	379	229	236	13.2656
CCCUGUG	chr11:65688725-65688976(+)$1	251	17	24	13.2656
CCGUGGG	chr20:34287570-34287782(+)$1	212	66	73	12.4843
CCCUCGG	chr11:8704647-8704850(+)$1	203	180	187	12.2500
CUCUGGG	chr11:64571036-64571311(-)$1	275	167	174	12.7187
CCCUGGG	chr16:67262959-67263210(+)$1	251	86	93	16.9375
CCCUGGG	chr7:158187834-158188072(-)$1	238	112	119	16.9375
CCCUGGC	chrX:153664529-153664803(+)$1	274	18	25	13.1093
GCCUGGG	chr3:186338680-186338891(+)$1	211	99	106	12.9531
CCCUGGC	chr16:68294745-68295013(+)$1	268	220	227	13.1093
CUCUGGG	chr22:42479130-42479425(+)$1	295	143	150	12.7187
ACCUGGG	chr20:32868659-32868968(-)$1	309	22	29	12.8750
CCCAGGG	chr19:45452404-45452623(+)$1	219	6	13	12.6406
CCCUGGC	chr10:73577002-73577248(-)$1	246	225	232	13.1093
CCCUGGG	chr3:52027701-52027950(-)$1	249	238	245	16.9375
CUCUGGG	chr6:30692183-30692398(+)$1	215	191	198	12.7187
CCCAGGG	chr6:31237014-31237248(-)$1	234	98	105	12.6406
UCCUGGG	chr14:24592916-24593189(+)$1	273	87	94	12.7968
CCCUGGA	chr19:45451985-45452202(+)$1	217	143	150	13.2656
CCCCGGG	chr7:101926337-101926630(+)$1	293	47	54	12.7968
CCCCGGG	chr2:97525516-97525834(-)$1	318	131	138	12.7968
ACCUGGG	chr5:137088270-137088558(-)$1	288	82	89	12.8750
CCCUGCG	chr14:23390066-23390310(-)$1	244	198	205	12.8750
CCCUGGA	chr6:31625740-31625944(+)$1	204	54	61	13.2656
CCCUGGG	chr17:40696168-40696515(+)$1	347	309	316	16.9375
CCCUGUG	chr19:18499688-18499909(+)$1	221	114	121	13.2656
CCAUGGG	chr20:57603789-57603996(-)$1	207	183	190	12.4843

#otherMatches

#Struct PSSM
C}DDDDe	chr19:6678062-6678265(-)$1	203	114	121	12.8750
BB}HHHH	chr4:155506417-155506649(-)$1	232	123	130	12.7187
FFF{GGG	chr16:697330-697578(+)$1	248	4	11	12.5625
fmmmmff	chr17:31267911-31268157(+)$1	246	143	150	13.2656
"""dddd	chr1:154248034-154248311(+)$1	277	81	88	13.2656
:::HHHH	chr19:12841484-12841719(-)$1	235	27	34	12.7968
BBB}DDD	chr11:62393080-62393355(-)$1	275	223	230	16.9375
}HHHHHH	chr3:183901391-183901660(+)$1	269	188	195	16.9375
eeeeexx	chr9:140137947-140138194(+)$1	247	71	78	12.7968
ccc"""d	chr22:41349453-41349726(+)$1	273	0	7	13.2656
bb22hhh	chr17:72764917-72765146(+)$1	229	143	150	12.9531
ffffddd	chr16:31105944-31106185(-)$1	241	144	151	12.8750
nnnneee	chr21:45402809-45403047(+)$1	238	52	59	12.7968
GCCC{DD	chr5:176524694-176524945(+)$1	251	20	27	12.7187
:::::CC	chr14:105954736-105954953(+)$1	217	157	164	12.2500
ca]ccc]	chr7:99564596-99564850(-)$1	254	207	214	16.9375
fffffee	chr1:43392575-43392803(-)$1	228	66	73	16.9375
ccc[ccc	chr19:50310068-50310363(+)$1	295	64	71	12.9531
ppppccc	chr21:43732203-43732478(-)$1	275	34	41	12.7187
gggggg:	chr20:31611153-31611378(+)$1	225	44	51	12.7968
BEEEEE:	chr19:36640908-36641276(+)$1	368	23	30	13.1093
A{GGGGG	chr11:116706629-116706835(-)$1	206	7	14	12.7968
GGGGddd	chr6:31625790-31626053(+)$1	263	4	11	13.2656
eeedddd	chr5:149825121-149825349(-)$1	228	110	117	13.2656
cclllcc	chr1:180166381-180166652(+)$1	271	21	28	12.7968
======:	chr7:150037549-150037796(-)$1	247	123	130	13.2656
JJeeeee	chr19:39923861-39924089(-)$1	228	137	144	12.8750
dd[bb""	chr5:85913716-85914044(+)$1	328	221	228	16.9375
ppppbbh	chr19:56154318-56154641(+)$1	323	187	194	16.9375
ccooooo	chr11:764232-764533(+)$1	301	252	259	12.9531
ccccccf	chr16:3072139-3072376(+)$1	237	76	83	16.9375
dd[bbqq	chr2:232319818-232320079(-)$1	261	15	22	13.2656
e!!gggg	chr14:103396930-103397206(+)$1	276	106	113	12.7187
eemmmme	chr20:61913110-61913368(+)$1	258	93	100	12.7968
bb:EEEE	chr11:66043959-66044203(+)$1	244	218	225	16.9375
fgggggg	chr22:39130850-39131136(-)$1	286	87	94	12.7968
pppccc]	chr12:132569311-132569659(+)$1	348	99	106	13.2656
ooooocc	chr15:80478370-80478749(+)$1	379	229	236	13.2656
####===	chr11:65688725-65688976(+)$1	251	17	24	13.2656
ggggggg	chr20:34287570-34287782(+)$1	212	66	73	12.4843
2ffffff	chr11:8704647-8704850(+)$1	203	180	187	12.2500
iiiiicc	chr11:64571036-64571311(-)$1	275	167	174	12.7187
pppppgg	chr16:67262959-67263210(+)$1	251	86	93	16.9375
8888eee	chr7:158187834-158188072(-)$1	238	112	119	16.9375
DDD{BB{	chrX:153664529-153664803(+)$1	274	18	25	13.1093
hhhhCCC	chr3:186338680-186338891(+)$1	211	99	106	12.9531
ooooocc	chr16:68294745-68295013(+)$1	268	220	227	13.1093
f22iiii	chr22:42479130-42479425(+)$1	295	143	150	12.7187
::GGGGG	chr20:32868659-32868968(-)$1	309	22	29	12.8750
::::DDD	chr19:45452404-45452623(+)$1	219	6	13	12.6406
dddd]gg	chr10:73577002-73577248(-)$1	246	225	232	13.1093
FFFFDDD	chr3:52027701-52027950(-)$1	249	238	245	16.9375
::GGGGG	chr6:30692183-30692398(+)$1	215	191	198	12.7187
EEEEEee	chr6:31237014-31237248(-)$1	234	98	105	12.6406
hccc:::	chr14:24592916-24593189(+)$1	273	87	94	12.7968
effffff	chr19:45451985-45452202(+)$1	217	143	150	13.2656
::::ddd	chr7:101926337-101926630(+)$1	293	47	54	12.7968
dddd:dd	chr2:97525516-97525834(-)$1	318	131	138	12.7968
::::ddd	chr5:137088270-137088558(-)$1	288	82	89	12.8750
ccdddd"	chr14:23390066-23390310(-)$1	244	198	205	12.8750
HHHHddd	chr6:31625740-31625944(+)$1	204	54	61	13.2656
DYYCCCG	chr17:40696168-40696515(+)$1	347	309	316	16.9375
b$$$$$e	chr19:18499688-18499909(+)$1	221	114	121	13.2656
2ddddGG	chr20:57603789-57603996(-)$1	207	183	190	12.4843

#DB
).))))(	chr19:6678062-6678265(-)$1	1	114	121	12.8750
)).))))	chr4:155506417-155506649(-)$1	1	123	130	12.7187
(((.(((	chr16:697330-697578(+)$1	1	4	11	12.5625
(....))	chr17:31267911-31268157(+)$1	1	143	150	13.2656
...((((	chr1:154248034-154248311(+)$1	1	81	88	13.2656
...((((	chr19:12841484-12841719(-)$1	1	27	34	12.7968
))).)))	chr11:62393080-62393355(-)$1	1	223	230	16.9375
.))))))	chr3:183901391-183901660(+)$1	1	188	195	16.9375
(((((..	chr9:140137947-140138194(+)$1	1	71	78	12.7968
(((...(	chr22:41349453-41349726(+)$1	1	0	7	13.2656
))..)))	chr17:72764917-72765146(+)$1	1	143	150	12.9531
(((((((	chr16:31105944-31106185(-)$1	1	144	151	12.8750
....)))	chr21:45402809-45403047(+)$1	1	52	59	12.7968
((((.((	chr5:176524694-176524945(+)$1	1	20	27	12.7187
.....))	chr14:105954736-105954953(+)$1	1	157	164	12.2500
)).))).	chr7:99564596-99564850(-)$1	1	207	214	16.9375
)))))((	chr1:43392575-43392803(-)$1	1	66	73	16.9375
(((.(((	chr19:50310068-50310363(+)$1	1	64	71	12.9531
....)))	chr21:43732203-43732478(-)$1	1	34	41	12.7187
)))))).	chr20:31611153-31611378(+)$1	1	44	51	12.7968
((((((.	chr19:36640908-36641276(+)$1	1	23	30	13.1093
(.(((((	chr11:116706629-116706835(-)$1	1	7	14	12.7968
(((((((	chr6:31625790-31626053(+)$1	1	4	11	13.2656
)))((((	chr5:149825121-149825349(-)$1	1	110	117	13.2656
((...))	chr1:180166381-180166652(+)$1	1	21	28	12.7968
)))))).	chr7:150037549-150037796(-)$1	1	123	130	13.2656
))(((((	chr19:39923861-39924089(-)$1	1	137	144	12.8750
((.((..	chr5:85913716-85914044(+)$1	1	221	228	16.9375
....)))	chr19:56154318-56154641(+)$1	1	187	194	16.9375
((.....	chr11:764232-764533(+)$1	1	252	259	12.9531
)))))))	chr16:3072139-3072376(+)$1	1	76	83	16.9375
((.((..	chr2:232319818-232320079(-)$1	1	15	22	13.2656
(..((((	chr14:103396930-103397206(+)$1	1	106	113	12.7187
((....)	chr20:61913110-61913368(+)$1	1	93	100	12.7968
)).))))	chr11:66043959-66044203(+)$1	1	218	225	16.9375
)((((((	chr22:39130850-39131136(-)$1	1	87	94	12.7968
...))).	chr12:132569311-132569659(+)$1	1	99	106	13.2656
.....))	chr15:80478370-80478749(+)$1	1	229	236	13.2656
....(((	chr11:65688725-65688976(+)$1	1	17	24	13.2656
)))))))	chr20:34287570-34287782(+)$1	1	66	73	12.4843
.))))))	chr11:8704647-8704850(+)$1	1	180	187	12.2500
(((((((	chr11:64571036-64571311(-)$1	1	167	174	12.7187
.....))	chr16:67262959-67263210(+)$1	1	86	93	16.9375
....)))	chr7:158187834-158188072(-)$1	1	112	119	16.9375
(((.((.	chrX:153664529-153664803(+)$1	1	18	25	13.1093
))))(((	chr3:186338680-186338891(+)$1	1	99	106	12.9531
.....))	chr16:68294745-68295013(+)$1	1	220	227	13.1093
)..))))	chr22:42479130-42479425(+)$1	1	143	150	12.7187
..(((((	chr20:32868659-32868968(-)$1	1	22	29	12.8750
....(((	chr19:45452404-45452623(+)$1	1	6	13	12.6406
)))).))	chr10:73577002-73577248(-)$1	1	225	232	13.1093
)))))))	chr3:52027701-52027950(-)$1	1	238	245	16.9375
..)))))	chr6:30692183-30692398(+)$1	1	191	198	12.7187
(((((((	chr6:31237014-31237248(-)$1	1	98	105	12.6406
))))...	chr14:24592916-24593189(+)$1	1	87	94	12.7968
)((((((	chr19:45451985-45452202(+)$1	1	143	150	13.2656
....(((	chr7:101926337-101926630(+)$1	1	47	54	12.7968
)))).((	chr2:97525516-97525834(-)$1	1	131	138	12.7968
....(((	chr5:137088270-137088558(-)$1	1	82	89	12.8750
))((((.	chr14:23390066-23390310(-)$1	1	198	205	12.8750
(((((((	chr6:31625740-31625944(+)$1	1	54	61	13.2656
)..))))	chr17:40696168-40696515(+)$1	1	309	316	16.9375
(.....(	chr19:18499688-18499909(+)$1	1	114	121	13.2656
.))))))	chr20:57603789-57603996(-)$1	1	183	190	12.4843

#PSSM
C : 0.82	G : 0.06	A : 0.04	c : 0.03	U : 0.03	
C : 0.85	A : 0.06	U : 0.04	c : 0.03	
C : 0.89	U : 0.04	u : 0.01	c : 0.01	G : 0.01	A : 0.01	
U : 0.85	C : 0.06	u : 0.03	A : 0.03	G : 0.01	
G : 0.93	g : 0.03	C : 0.03	
G : 0.81	U : 0.10	C : 0.03	g : 0.03	A : 0.01	
G : 0.79	A : 0.09	C : 0.06	g : 0.03	U : 0.01	

#score	874.3125
#seq	64
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_CDS_m1_run1.nuc.txt

#NT
AGGAAGAGGAAGA	chr19:49377468-49377722(+)$1	254	73	86	26.4999
AAGAAGAAGAAGA	chr12:6879238-6879468(+)$1	230	90	103	33.2592
AAGAAGAAGAACA	chr6:116911354-116911618(+)$1	264	177	190	28.5370
AAGAAGAAGAAGA	chr12:6879222-6879438(+)$1	216	106	119	33.2592
AAGAAAAAGAAGA	chr12:76449778-76450000(-)$1	222	105	118	29.9259
aagaagaagcaga	chr1:90492974-90493279(+)$1	305	53	66	28.4444
aagaagaagaaga	chr1:235377097-235377346(-)$1	249	67	80	33.2592
AGGAAGAUGAAGA	chrX:135593908-135594171(+)$1	263	31	44	26.8703
AAGUUGAAGAAGA	chr5:131951642-131951914(+)$1	272	113	126	25.5740
AAGAAGAUGAAGA	chr9:100774629-100774848(+)$1	219	95	108	30.3888
aggaagaagaaga	chr4:174253129-174253345(-)$1	216	65	78	29.7407
aagaagaagaaga	chrX:154005031-154005264(+)$1	233	60	73	33.2592
GAGAGGAAGAAGA	chr1:150192892-150193157(-)$1	265	145	158	24.9259
aggaugaggaaga	chr11:129992096-129992363(+)$1	267	165	178	22.8888
AAGAGAAAGAAGA	chr3:37368311-37368562(+)$1	251	44	57	26.3148
AAGAAAAAGAAGA	chr12:76449711-76449951(-)$1	240	56	69	29.9259
AAGAAAAAGAAGA	chr2:99977989-99978356(+)$1	367	135	148	29.9259
AAGAAGAUGAAGA	chr9:100774648-100774854(+)$1	206	76	89	30.3888
AAGAAAAAGAAGA	chr5:149777853-149778097(+)$1	244	143	156	29.9259
aaggagaagaaga	chr9:131456127-131456364(+)$1	237	75	88	29.5555
AAGAAGAUGAUGA	chr15:25615994-25616241(-)$1	247	92	105	25.5740
aaggggaagaaga	chr1:16891198-16891504(-)$1	306	122	135	25.9444
aagaagaggaaga	chr2:232576553-232576794(+)$1	241	89	102	30.0185
AAAAUGAAGAAGA	chr15:59205685-59205919(-)$1	234	100	113	24.8333
aagaagaagaaga	chr6:31857192-31857419(-)$1	227	98	111	33.2592
AAGAAAAAGAAGA	chr12:76449751-76449978(-)$1	227	83	96	29.9259
AAGGAGAAGAAAA	chr20:30381596-30381832(+)$1	236	195	208	24.8333
AAGAAAAAGAAGA	chr12:76449816-76450021(-)$1	205	126	139	29.9259
AGGAAGUAGAAGA	chr12:42707448-42707668(-)$1	220	103	116	25.2962
aagaagaagaaga	chr1:235377157-235377416(-)$1	259	137	150	33.2592
aagaaaaagaaga	chr1:94341723-94341971(-)$1	248	33	46	29.9259
AAGAUGAAGAAGA	chr15:69072648-69072861(-)$1	213	92	105	29.6481
aagaugaagaaga	chr13:31035375-31035625(-)$1	250	85	98	29.6481
aggaagaagaaga	chr12:6879000-6879265(+)$1	265	108	121	29.7407
CAGAAGGAGAAGA	chr21:40883510-40883764(+)$1	254	154	167	24.0925
augaaggagaaga	chr9:100777545-100777747(+)$1	202	148	161	24.8333
aagaggaagaaga	chr22:41650211-41650572(-)$1	361	109	122	29.6481
aggaagaagaaga	chr4:174253145-174253368(-)$1	223	88	101	29.7407
aagaagaagaaga	chr14:102551021-102551256(-)$1	235	80	93	33.2592
AAGAAGAUGAAGA	chr5:139903688-139903928(+)$1	240	59	72	30.3888
AAGAAGAAGAAGA	chr10:91498211-91498472(+)$1	261	126	139	33.2592
aagaagaagaaga	chr14:102551017-102551221(-)$1	204	45	58	33.2592
aagaagaugaaga	chr9:131456183-131456389(+)$1	206	100	113	30.3888
AAGAAGAAGAAGA	chr1:27105556-27105824(+)$1	268	120	133	33.2592
AAGGAGAAGAAGG	chrX:53563473-53563728(-)$1	255	114	127	24.7407
aaggagaagaaga	chr9:131456178-131456383(+)$1	205	24	37	29.5555
AAGAAAAUGAAGA	chr7:106840558-106840814(+)$1	256	77	90	27.0555
aagaagaugaaga	chr9:131456194-131456419(+)$1	225	89	102	30.3888
aagaaguagaaga	chr4:69202671-69203023(-)$1	352	33	46	28.8148
AUGAAGAUGAAGA	chr4:39324859-39325138(-)$1	279	117	130	26.4074
aaggagaagaaga	chr9:131456164-131456378(+)$1	214	38	51	29.5555
aagaagaggaaga	chr1:150195410-150195661(-)$1	251	132	145	30.0185
AAGUGGAAGAAGA	chr3:121416149-121416396(-)$1	247	148	161	25.5740

#otherMatches

#Struct PSSM
77777dddd::::	chr11:129991588-129991806(+)$1	218	44	57	30.0185
:===========+	chr19:49377468-49377722(+)$1	254	73	86	26.4999
]bb4444eeeee]	chr12:6879238-6879468(+)$1	230	90	103	33.2592
:::::eeeee###	chr6:116911354-116911618(+)$1	264	177	190	28.5370
]bb4444eeeee]	chr12:6879222-6879438(+)$1	216	106	119	33.2592
ggg::DDDD{DDD	chr12:76449778-76450000(-)$1	222	105	118	29.9259
^^^^^^^^^^^^^	chr1:90492974-90493279(+)$1	305	53	66	28.4444
F:::::::::::b	chr1:235377097-235377346(-)$1	249	67	80	33.2592
::::ffffff$$$	chrX:135593908-135594171(+)$1	263	31	44	26.8703
::GGGGGGGPPPP	chr5:131951642-131951914(+)$1	272	113	126	25.5740
ggggg:::::FFF	chr9:100774629-100774848(+)$1	219	95	108	30.3888
::::::::DDDDP	chr4:174253129-174253345(-)$1	216	65	78	29.7407
99999ggggggg]	chrX:154005031-154005264(+)$1	233	60	73	33.2592
E}DDDD::ggggg	chr1:150192892-150193157(-)$1	265	145	158	24.9259
EEEEE}JJJJJJJ	chr11:129992096-129992363(+)$1	267	165	178	22.8888
qqdddd333bb]c	chr3:37368311-37368562(+)$1	251	44	57	26.3148
!bb$$$$$ccc!!	chr12:76449711-76449951(-)$1	240	56	69	29.9259
::::::::::::c	chr2:99977989-99978356(+)$1	367	135	148	29.9259
ggggg:::::FFF	chr9:100774648-100774854(+)$1	206	76	89	30.3888
22bb333dddd66	chr5:149777853-149778097(+)$1	244	143	156	29.9259
===]a]bb::::b	chr9:131456127-131456364(+)$1	237	75	88	29.5555
::::::::ddddp	chr15:25615994-25616241(-)$1	247	92	105	25.5740
::AKKEEEEEGGG	chr1:16891198-16891504(-)$1	306	122	135	25.9444
::::::::::::e	chr2:232576553-232576794(+)$1	241	89	102	30.0185
:::::::::::::	chr15:59205685-59205919(-)$1	234	100	113	24.8333
bb55555ccc333	chr6:31857192-31857419(-)$1	227	98	111	33.2592
^^^^^^^^^^^^^	chr12:76449751-76449978(-)$1	227	83	96	29.9259
777eeeee00000	chr20:30381596-30381832(+)$1	236	195	208	24.8333
ggg22ddddffff	chr12:76449816-76450021(-)$1	205	126	139	29.9259
iiiiii]a]bb::	chr12:42707448-42707668(-)$1	220	103	116	25.2962
fffff55555ddd	chr1:235377157-235377416(-)$1	259	137	150	33.2592
HKKEEEEEKKJJJ	chr1:94341723-94341971(-)$1	248	33	46	29.9259
ooa>>>>>>>>>>	chr15:69072648-69072861(-)$1	213	92	105	29.6481
[eeeee####fff	chr13:31035375-31035625(-)$1	250	85	98	29.6481
:::::::::::::	chr12:6879000-6879265(+)$1	265	108	121	29.7407
[bb"""ffffff[	chr21:40883510-40883764(+)$1	254	154	167	24.0925
EEE}EEEEE::::	chr9:100777545-100777747(+)$1	202	148	161	24.8333
]ccc>>>>>>>>>	chr22:41650211-41650572(-)$1	361	109	122	29.6481
:::::::::::::	chr4:174253145-174253368(-)$1	223	88	101	29.7407
^^^^^^^^^^^^^	chr14:102551021-102551256(-)$1	235	80	93	33.2592
NNNIIIIIIIII:	chr5:139903688-139903928(+)$1	240	59	72	30.3888
ddd::EEEEE:::	chr10:91498211-91498472(+)$1	261	126	139	33.2592
^^^^^^^^^^^^^	chr14:102551017-102551221(-)$1	204	45	58	33.2592
::::::bbmmmmb	chr9:131456183-131456389(+)$1	206	100	113	30.3888
:::::::::::::	chr1:27105556-27105824(+)$1	268	120	133	33.2592
gggggg:::::CC	chrX:53563473-53563728(-)$1	255	114	127	24.7407
::::::::::::b	chr9:131456178-131456383(+)$1	205	24	37	29.5555
333hhhhhhhh66	chr7:106840558-106840814(+)$1	256	77	90	27.0555
ee%%%%%%dddd[	chr9:131456194-131456419(+)$1	225	89	102	30.3888
:::::cccqqqqq	chr4:69202671-69203023(-)$1	352	33	46	28.8148
::::::::HHHHH	chr4:39324859-39325138(-)$1	279	117	130	26.4074
cc4444ggggggg	chr9:131456164-131456378(+)$1	214	38	51	29.5555
:::::::::::::	chr1:150195410-150195661(-)$1	251	132	145	30.0185
>>>>>>>>>>ddd	chr3:121416149-121416396(-)$1	247	148	161	25.5740

#DB
.....))))....	chr11:129991588-129991806(+)$1	1	44	57	30.0185
.(((((((((((.	chr19:49377468-49377722(+)$1	1	73	86	26.4999
.))....))))).	chr12:6879238-6879468(+)$1	1	90	103	33.2592
.....(((((...	chr6:116911354-116911618(+)$1	1	177	190	28.5370
.))....))))).	chr12:6879222-6879438(+)$1	1	106	119	33.2592
)))..((((.(((	chr12:76449778-76450000(-)$1	1	105	118	29.9259
.............	chr1:90492974-90493279(+)$1	1	53	66	28.4444
(...........(	chr1:235377097-235377346(-)$1	1	67	80	33.2592
....((((((...	chrX:135593908-135594171(+)$1	1	31	44	26.8703
..(((((((....	chr5:131951642-131951914(+)$1	1	113	126	25.5740
))))).....(((	chr9:100774629-100774848(+)$1	1	95	108	30.3888
........((((.	chr4:174253129-174253345(-)$1	1	65	78	29.7407
.....))))))).	chrX:154005031-154005264(+)$1	1	60	73	33.2592
).))))..(((((	chr1:150192892-150193157(-)$1	1	145	158	24.9259
))))).)))))))	chr11:129992096-129992363(+)$1	1	165	178	22.8888
..))))...)).)	chr3:37368311-37368562(+)$1	1	44	57	26.3148
.((.....(((..	chr12:76449711-76449951(-)$1	1	56	69	29.9259
............(	chr2:99977989-99978356(+)$1	1	135	148	29.9259
))))).....(((	chr9:100774648-100774854(+)$1	1	76	89	30.3888
..))...))))..	chr5:149777853-149778097(+)$1	1	143	156	29.9259
))).).))....(	chr9:131456127-131456364(+)$1	1	75	88	29.5555
........((((.	chr15:25615994-25616241(-)$1	1	92	105	25.5740
..(..((((((((	chr1:16891198-16891504(-)$1	1	122	135	25.9444
............(	chr2:232576553-232576794(+)$1	1	89	102	30.0185
.............	chr15:59205685-59205919(-)$1	1	100	113	24.8333
)).....)))...	chr6:31857192-31857419(-)$1	1	98	111	33.2592
.............	chr12:76449751-76449978(-)$1	1	83	96	29.9259
...))))).....	chr20:30381596-30381832(+)$1	1	195	208	24.8333
)))..))))))))	chr12:76449816-76450021(-)$1	1	126	139	29.9259
)))))).).))..	chr12:42707448-42707668(-)$1	1	103	116	25.2962
))))).....)))	chr1:235377157-235377416(-)$1	1	137	150	33.2592
(..(((((..(((	chr1:94341723-94341971(-)$1	1	33	46	29.9259
..)..........	chr15:69072648-69072861(-)$1	1	92	105	29.6481
.(((((....(((	chr13:31035375-31035625(-)$1	1	85	98	29.6481
.............	chr12:6879000-6879265(+)$1	1	108	121	29.7407
.((...((((((.	chr21:40883510-40883764(+)$1	1	154	167	24.0925
))).)))))....	chr9:100777545-100777747(+)$1	1	148	161	24.8333
.))).........	chr22:41650211-41650572(-)$1	1	109	122	29.6481
.............	chr4:174253145-174253368(-)$1	1	88	101	29.7407
.............	chr14:102551021-102551256(-)$1	1	80	93	33.2592
...(((((((((.	chr5:139903688-139903928(+)$1	1	59	72	30.3888
)))..)))))...	chr10:91498211-91498472(+)$1	1	126	139	33.2592
.............	chr14:102551017-102551221(-)$1	1	45	58	33.2592
......((....)	chr9:131456183-131456389(+)$1	1	100	113	30.3888
.............	chr1:27105556-27105824(+)$1	1	120	133	33.2592
)))))).....((	chrX:53563473-53563728(-)$1	1	114	127	24.7407
............(	chr9:131456178-131456383(+)$1	1	24	37	29.5555
...))))))))..	chr7:106840558-106840814(+)$1	1	77	90	27.0555
((......((((.	chr9:131456194-131456419(+)$1	1	89	102	30.3888
.....(((.....	chr4:69202671-69203023(-)$1	1	33	46	28.8148
........(((((	chr4:39324859-39325138(-)$1	1	117	130	26.4074
))....)))))))	chr9:131456164-131456378(+)$1	1	38	51	29.5555
.............	chr1:150195410-150195661(-)$1	1	132	145	30.0185
..........)))	chr3:121416149-121416396(-)$1	1	148	161	25.5740

#PSSM
A : 0.49	a : 0.46	G : 0.01	C : 0.01	
A : 0.46	a : 0.37	g : 0.07	G : 0.05	u : 0.01	U : 0.01	
G : 0.51	g : 0.46	A : 0.01	
A : 0.46	a : 0.38	g : 0.07	U : 0.03	G : 0.03	
A : 0.42	a : 0.38	U : 0.05	G : 0.05	u : 0.03	g : 0.03	
g : 0.44	G : 0.38	A : 0.14	a : 0.01	
A : 0.49	a : 0.42	U : 0.01	G : 0.01	g : 0.01	u : 0.01	
A : 0.38	a : 0.35	U : 0.12	g : 0.07	u : 0.03	G : 0.01	
G : 0.53	g : 0.46	
A : 0.53	a : 0.44	c : 0.01	
A : 0.51	a : 0.46	U : 0.01	
G : 0.49	g : 0.46	C : 0.01	A : 0.01	
A : 0.51	a : 0.46	G : 0.01	

#score	1568.962962962961
#seq	54
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_CDS_m3_run1.nuc.txt

#NT
UUUUAAA	chr16:69660181-69660438(+)$1	257	84	91	13.9661
UUUGAAG	chr2:191523771-191524063(+)$1	292	64	71	12.8644
GUUGAAA	chr1:33145126-33145379(+)$1	253	51	58	13.2881
UUUUAAA	chr2:11375964-11376201(-)$1	237	39	46	13.9661
UUUGAAA	chr3:33434790-33435049(-)$1	259	4	11	16.9322
UCUGAAA	chr8:16947872-16948171(+)$1	299	138	145	12.4406
UUUGAAA	chr1:212119913-212120165(-)$1	252	73	80	16.9322
UUUGCAA	chr2:15651316-15651586(-)$1	270	72	79	12.2711
UUUCAAA	chr5:61690269-61690535(-)$1	266	117	124	13.5423
UUUGGAA	chr11:85346979-85347243(+)$1	264	219	226	12.3559
UCUGAAA	chr3:27203921-27204206(-)$1	285	136	143	12.4406
UUUGAAA	chr8:67591832-67592122(+)$1	290	71	78	16.9322
uuucaaa	chr9:15185274-15185541(-)$1	267	5	12	13.5423
UUUGACA	chr16:70398329-70398584(+)$1	255	57	64	12.3559
UUAGAAA	chr1:36474387-36474662(+)$1	275	123	130	12.4406
CUUGAAA	chr7:135098227-135098483(-)$1	256	36	43	13.1186
AUUGAAA	chr1:59134570-59134821(-)$1	251	86	93	13.4576
UUUAAAA	chr3:140692447-140692695(+)$1	248	68	75	13.7118
UGUGAAA	chr2:61505273-61505531(-)$1	258	20	27	12.3559
UUUGAAA	chr1:153721044-153721305(+)$1	261	109	116	16.9322
UUUGAGA	chr19:40590563-40590823(-)$1	260	69	76	12.4406
UUUAAAA	chr2:114691722-114691997(+)$1	275	20	27	13.7118
UUUGAAA	chr2:38812895-38813149(-)$1	254	169	176	16.9322
UUUGAAA	chr5:137281543-137281798(-)$1	255	23	30	16.9322
UUUAAAA	chr20:47587540-47587802(+)$1	262	12	19	13.7118
AUUGAAA	chr10:92655529-92655785(+)$1	256	52	59	13.4576
AUUGAAA	chr6:42603040-42603299(+)$1	259	151	158	13.4576
UUUUAAA	chr3:171904384-171904641(+)$1	257	26	33	13.9661
UUUGAAG	chr6:53363630-53363889(-)$1	259	227	234	12.8644
UUUAAAA	chr3:156870805-156871060(-)$1	255	0	7	13.7118
UUUGAAA	chr4:139101786-139102046(-)$1	260	8	15	16.9322
UUUGGAA	chr22:46085478-46085736(+)$1	258	59	66	12.3559
uuagaaa	chr6:30618649-30618902(+)$1	253	54	61	12.4406
UUUGAAG	chr2:135703560-135703845(+)$1	285	23	30	12.8644
UAUGAAA	chr11:120925651-120925897(+)$1	246	140	147	12.3559
CUUGAAA	chr5:38959257-38959541(-)$1	284	136	143	13.1186
UUAGAAA	chr11:9853832-9854149(-)$1	317	49	56	12.4406
UUUGAGA	chr4:22425845-22426101(-)$1	256	22	29	12.4406
UUUCAAA	chr10:33481233-33481482(-)$1	249	10	17	13.5423
UUUGAUA	chr3:100013802-100014062(+)$1	260	32	39	12.3559
AUUGAAA	chr9:114132918-114133164(-)$1	246	127	134	13.4576
UUUGAAG	chr15:78834655-78834927(+)$1	272	18	25	12.8644
AUUGAAA	chr3:57627335-57627590(-)$1	255	28	35	13.4576
UUUGAAA	chr5:74043474-74043724(-)$1	250	211	218	16.9322
UUUUAAA	chrX:30718422-30718675(+)$1	253	92	99	13.9661
GUUGAAA	chr6:82914492-82914768(-)$1	276	157	164	13.2881
UUUUAAA	chr12:100603739-100603982(+)$1	243	101	108	13.9661
AUUGAAA	chr3:25777485-25777776(-)$1	291	73	80	13.4576
UUUUAAA	chr2:148700941-148701191(-)$1	250	47	54	13.9661
UUUUAAA	chr11:87006714-87006965(+)$1	251	20	27	13.9661
UUUGAAG	chr20:21328676-21328913(+)$1	237	164	171	12.8644
GUUGAAA	chr15:23014387-23014644(-)$1	257	19	26	13.2881
UUUGAAA	chr9:95012096-95012373(-)$1	277	155	162	16.9322
UUUGAAC	chr14:31592651-31592933(-)$1	282	221	228	12.5254
UUUUAAA	chr5:134044269-134044538(+)$1	269	45	52	13.9661
GUUGAAA	chr2:86363526-86363781(+)$1	255	163	170	13.2881
UUUGAAA	chr6:132175949-132176247(+)$1	298	117	124	16.9322
UUUAAAA	chrX:110931003-110931255(+)$1	252	244	251	13.7118

#otherMatches

#Struct PSSM
ggglllg	chr12:62864364-62864632(+)$1	268	252	259	16.9322
^^^^^^^	chr16:69660181-69660438(+)$1	257	84	91	13.9661
CCKKCCC	chr2:191523771-191524063(+)$1	292	64	71	12.8644
FFFFFF:	chr1:33145126-33145379(+)$1	253	51	58	13.2881
ellleee	chr2:11375964-11376201(-)$1	237	39	46	13.9661
"""ccc[	chr3:33434790-33435049(-)$1	259	4	11	16.9322
(((((((	chr8:16947872-16948171(+)$1	299	138	145	12.4406
ff"""dd	chr1:212119913-212120165(-)$1	252	73	80	16.9322
JJJJJ::	chr2:15651316-15651586(-)$1	270	72	79	12.2711
COOOOOO	chr5:61690269-61690535(-)$1	266	117	124	13.5423
hhhhhhh	chr11:85346979-85347243(+)$1	264	219	226	12.3559
[dddd!!	chr3:27203921-27204206(-)$1	285	136	143	12.4406
wwwwwww	chr8:67591832-67592122(+)$1	290	71	78	16.9322
::::::G	chr9:15185274-15185541(-)$1	267	5	12	13.5423
###bb[c	chr16:70398329-70398584(+)$1	255	57	64	12.3559
==[aqqq	chr1:36474387-36474662(+)$1	275	123	130	12.4406
rrrrrrr	chr7:135098227-135098483(-)$1	256	36	43	13.1186
&&&eeee	chr1:59134570-59134821(-)$1	251	86	93	13.4576
GGGGGGG	chr3:140692447-140692695(+)$1	248	68	75	13.7118
GOOOOOO	chr2:61505273-61505531(-)$1	258	20	27	12.3559
eeee[ii	chr1:153721044-153721305(+)$1	261	109	116	16.9322
'''ccco	chr19:40590563-40590823(-)$1	260	69	76	12.4406
"""dddd	chr2:114691722-114691997(+)$1	275	20	27	13.7118
55555hh	chr2:38812895-38813149(-)$1	254	169	176	16.9322
qeeeee2	chr5:137281543-137281798(-)$1	255	23	30	16.9322
:::::::	chr20:47587540-47587802(+)$1	262	12	19	13.7118
EEggggg	chr10:92655529-92655785(+)$1	256	52	59	13.4576
GGGGG}F	chr6:42603040-42603299(+)$1	259	151	158	13.4576
RRRRRRR	chr3:171904384-171904641(+)$1	257	26	33	13.9661
B~~~~FF	chr6:53363630-53363889(-)$1	259	227	234	12.8644
:::::GG	chr3:156870805-156871060(-)$1	255	0	7	13.7118
FFFLLLE	chr4:139101786-139102046(-)$1	260	8	15	16.9322
##eeeee	chr22:46085478-46085736(+)$1	258	59	66	12.3559
ddddmmm	chr6:30618649-30618902(+)$1	253	54	61	12.4406
====$$$	chr2:135703560-135703845(+)$1	285	23	30	12.8644
!dddd!!	chr11:120925651-120925897(+)$1	246	140	147	12.3559
ddddooo	chr5:38959257-38959541(-)$1	284	136	143	13.1186
""eeeee	chr11:9853832-9854149(-)$1	317	49	56	12.4406
""eeeee	chr4:22425845-22426101(-)$1	256	22	29	12.4406
$$ddddc	chr10:33481233-33481482(-)$1	249	10	17	13.5423
hhhhhhh	chr3:100013802-100014062(+)$1	260	32	39	12.3559
iiiiiii	chr9:114132918-114133164(-)$1	246	127	134	13.4576
MMBBFFF	chr15:78834655-78834927(+)$1	272	18	25	12.8644
c[dddd^	chr3:57627335-57627590(-)$1	255	28	35	13.4576
f666666	chr5:74043474-74043724(-)$1	250	211	218	16.9322
:::::::	chrX:30718422-30718675(+)$1	253	92	99	13.9661
fffff]b	chr6:82914492-82914768(-)$1	276	157	164	13.2881
IIII:::	chr12:100603739-100603982(+)$1	243	101	108	13.9661
>>>>>>>	chr3:25777485-25777776(-)$1	291	73	80	13.4576
dssssss	chr2:148700941-148701191(-)$1	250	47	54	13.9661
gggggg:	chr11:87006714-87006965(+)$1	251	20	27	13.9661
nndddd]	chr20:21328676-21328913(+)$1	237	164	171	12.8644
DDDDWWW	chr15:23014387-23014644(-)$1	257	19	26	13.2881
b22bbdd	chr9:95012096-95012373(-)$1	277	155	162	16.9322
ooooeee	chr14:31592651-31592933(-)$1	282	221	228	12.5254
ee+++++	chr5:134044269-134044538(+)$1	269	45	52	13.9661
eeeeqqq	chr2:86363526-86363781(+)$1	255	163	170	13.2881
g[bbccc	chr6:132175949-132176247(+)$1	298	117	124	16.9322
ffff:::	chrX:110931003-110931255(+)$1	252	244	251	13.7118

#DB
(((...)	chr12:62864364-62864632(+)$1	1	252	259	16.9322
.......	chr16:69660181-69660438(+)$1	1	84	91	13.9661
((..(((	chr2:191523771-191524063(+)$1	1	64	71	12.8644
((((((.	chr1:33145126-33145379(+)$1	1	51	58	13.2881
(...)))	chr2:11375964-11376201(-)$1	1	39	46	13.9661
...(((.	chr3:33434790-33435049(-)$1	1	4	11	16.9322
.......	chr8:16947872-16948171(+)$1	1	138	145	12.4406
((...((	chr1:212119913-212120165(-)$1	1	73	80	16.9322
(((((..	chr2:15651316-15651586(-)$1	1	72	79	12.2711
(......	chr5:61690269-61690535(-)$1	1	117	124	13.5423
)))))))	chr11:85346979-85347243(+)$1	1	219	226	12.3559
.((((..	chr3:27203921-27204206(-)$1	1	136	143	12.4406
.......	chr8:67591832-67592122(+)$1	1	71	78	16.9322
......(	chr9:15185274-15185541(-)$1	1	5	12	13.5423
...((.(	chr16:70398329-70398584(+)$1	1	57	64	12.3559
((.(...	chr1:36474387-36474662(+)$1	1	123	130	12.4406
.......	chr7:135098227-135098483(-)$1	1	36	43	13.1186
...((((	chr1:59134570-59134821(-)$1	1	86	93	13.4576
(((((((	chr3:140692447-140692695(+)$1	1	68	75	13.7118
(......	chr2:61505273-61505531(-)$1	1	20	27	12.3559
((((.((	chr1:153721044-153721305(+)$1	1	109	116	16.9322
...(((.	chr19:40590563-40590823(-)$1	1	69	76	12.4406
...((((	chr2:114691722-114691997(+)$1	1	20	27	13.7118
.....))	chr2:38812895-38813149(-)$1	1	169	176	16.9322
.))))).	chr5:137281543-137281798(-)$1	1	23	30	16.9322
.......	chr20:47587540-47587802(+)$1	1	12	19	13.7118
(((((((	chr10:92655529-92655785(+)$1	1	52	59	13.4576
))))).)	chr6:42603040-42603299(+)$1	1	151	158	13.4576
.......	chr3:171904384-171904641(+)$1	1	26	33	13.9661
)....))	chr6:53363630-53363889(-)$1	1	227	234	12.8644
.....((	chr3:156870805-156871060(-)$1	1	0	7	13.7118
(((...(	chr4:139101786-139102046(-)$1	1	8	15	16.9322
..(((((	chr22:46085478-46085736(+)$1	1	59	66	12.3559
((((...	chr6:30618649-30618902(+)$1	1	54	61	12.4406
((((...	chr2:135703560-135703845(+)$1	1	23	30	12.8644
.((((..	chr11:120925651-120925897(+)$1	1	140	147	12.3559
((((...	chr5:38959257-38959541(-)$1	1	136	143	13.1186
..(((((	chr11:9853832-9854149(-)$1	1	49	56	12.4406
..(((((	chr4:22425845-22426101(-)$1	1	22	29	12.4406
..(((((	chr10:33481233-33481482(-)$1	1	10	17	13.5423
)))))))	chr3:100013802-100014062(+)$1	1	32	39	12.3559
(((((((	chr9:114132918-114133164(-)$1	1	127	134	13.4576
..(((((	chr15:78834655-78834927(+)$1	1	18	25	12.8644
(.((((.	chr3:57627335-57627590(-)$1	1	28	35	13.4576
)......	chr5:74043474-74043724(-)$1	1	211	218	16.9322
.......	chrX:30718422-30718675(+)$1	1	92	99	13.9661
))))).)	chr6:82914492-82914768(-)$1	1	157	164	13.2881
((((...	chr12:100603739-100603982(+)$1	1	101	108	13.9661
.......	chr3:25777485-25777776(-)$1	1	73	80	13.4576
(......	chr2:148700941-148701191(-)$1	1	47	54	13.9661
)))))).	chr11:87006714-87006965(+)$1	1	20	27	13.9661
..)))).	chr20:21328676-21328913(+)$1	1	164	171	12.8644
((((...	chr15:23014387-23014644(-)$1	1	19	26	13.2881
)..))((	chr9:95012096-95012373(-)$1	1	155	162	16.9322
....)))	chr14:31592651-31592933(-)$1	1	221	228	12.5254
((.....	chr5:134044269-134044538(+)$1	1	45	52	13.9661
((((...	chr2:86363526-86363781(+)$1	1	163	170	13.2881
(.(((((	chr6:132175949-132176247(+)$1	1	117	124	16.9322
))))...	chrX:110931003-110931255(+)$1	1	244	251	13.7118

#PSSM
U : 0.74	A : 0.10	G : 0.06	u : 0.05	C : 0.03	
U : 0.88	u : 0.05	C : 0.03	G : 0.01	A : 0.01	
U : 0.91	u : 0.03	A : 0.03	a : 0.01	
G : 0.69	U : 0.13	A : 0.08	g : 0.03	C : 0.03	c : 0.01	
A : 0.89	a : 0.05	G : 0.03	C : 0.01	
A : 0.88	a : 0.05	G : 0.03	C : 0.01	U : 0.01	
A : 0.84	G : 0.08	a : 0.05	C : 0.01	

#score	817.6440677966093
#seq	59
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_transcript_m3_run1.nuc.txt

#NT
cacacac	chr16:46949082-46949304(+)$1	222	99	106	21.0000
cacacac	chr22:47400299-47400547(+)$1	248	94	101	21.0000
cacacac	chr16:46949679-46949889(+)$1	210	2	9	21.0000
cacacac	chr11:2153010-2153215(-)$1	205	43	50	21.0000
cacacac	chr21:46949735-46949950(-)$1	215	25	32	21.0000
cacacac	chr16:72921494-72921743(-)$1	249	58	65	21.0000
cacacac	chr7:94834182-94834434(+)$1	252	6	13	21.0000
cacacac	chr15:81192972-81193299(-)$1	327	269	276	21.0000
cacacac	chr12:689854-690157(-)$1	303	59	66	21.0000
cacacac	chr19:33949496-33949773(-)$1	277	54	61	21.0000
cacacac	chr17:55726577-55726830(+)$1	253	26	33	21.0000
cacacac	chr16:46949726-46949929(+)$1	203	117	124	21.0000
cacacac	chr17:80786143-80786448(+)$1	305	7	14	21.0000
cacacac	chr17:76889339-76889551(-)$1	212	0	7	21.0000
CACACAC	chr9:96411944-96412252(+)$1	308	134	141	21.0000
cacacac	chr7:4288213-4288461(+)$1	248	45	52	21.0000
cacacac	chr22:47555081-47555303(+)$1	222	92	99	21.0000
cacacac	chr14:104341385-104341664(-)$1	279	171	178	21.0000
cacacac	chr7:157631940-157632227(-)$1	287	10	17	21.0000
cacacac	chr11:2152770-2152976(-)$1	206	2	9	21.0000
CACACAC	chr6:159048001-159048225(+)$1	224	13	20	21.0000
cacacac	chr19:6717415-6717684(-)$1	269	21	28	21.0000
cacacac	chr22:47554544-47554778(+)$1	234	38	45	21.0000
cacacac	chr5:150487470-150487722(-)$1	252	1	8	21.0000
CACACAC	chr9:138915623-138915892(-)$1	269	211	218	21.0000
cacacac	chr22:47401476-47401730(+)$1	254	9	16	21.0000
cacacac	chr18:74116776-74117053(-)$1	277	187	194	21.0000
cacacac	chr11:2153200-2153402(-)$1	202	68	75	21.0000
cacacac	chr18:74608651-74608935(+)$1	284	33	40	21.0000
cacacac	chr3:127865572-127865860(-)$1	288	186	193	21.0000
cacacac	chr19:54062669-54062934(+)$1	265	8	15	21.0000
cacacac	chr19:4036578-4036819(+)$1	241	14	21	21.0000
cacacac	chr17:4618779-4619048(+)$1	269	3	10	21.0000
cacacac	chr11:109988742-109989026(+)$1	284	46	53	21.0000
cacacac	chr12:124999997-125000344(-)$1	347	8	15	21.0000
cacacac	chr2:203630731-203630992(+)$1	261	92	99	21.0000
cacacac	chr17:55753573-55753822(+)$1	249	4	11	21.0000
cacacac	chr22:47555103-47555333(+)$1	230	70	77	21.0000
cacacac	chr19:6717394-6717615(-)$1	221	15	22	21.0000
cacacac	chr11:2153238-2153441(-)$1	203	107	114	21.0000
CACACAC	chr2:239983163-239983427(-)$1	264	134	141	21.0000
cacacac	chr15:25306643-25307016(+)$1	373	119	126	21.0000
cacacac	chr11:2152815-2153017(-)$1	202	5	12	21.0000
cacacac	chr19:33949274-33949529(-)$1	255	31	38	21.0000
cacacac	chr11:2153003-2153205(-)$1	202	9	16	21.0000
cacacac	chr11:2152710-2152913(-)$1	203	22	29	21.0000
CACACAC	chr18:6110585-6110841(-)$1	256	140	147	21.0000
cacacac	chr11:2152885-2153101(-)$1	216	2	9	21.0000

#otherMatches

#Struct PSSM
C::::::	chr1:235751203-235751498(-)$1	295	286	293	21.0000
^^^^^^^	chr16:46949082-46949304(+)$1	222	99	106	21.0000
:::::::	chr22:47400299-47400547(+)$1	248	94	101	21.0000
:::::::	chr16:46949679-46949889(+)$1	210	2	9	21.0000
bqqqqqq	chr11:2153010-2153215(-)$1	205	43	50	21.0000
:::::::	chr21:46949735-46949950(-)$1	215	25	32	21.0000
ffvvvvv	chr16:72921494-72921743(-)$1	249	58	65	21.0000
:::::::	chr7:94834182-94834434(+)$1	252	6	13	21.0000
@@@@@@@	chr15:81192972-81193299(-)$1	327	269	276	21.0000
CQQQQQQ	chr12:689854-690157(-)$1	303	59	66	21.0000
:::::::	chr19:33949496-33949773(-)$1	277	54	61	21.0000
:::::::	chr17:55726577-55726830(+)$1	253	26	33	21.0000
::::::c	chr16:46949726-46949929(+)$1	203	117	124	21.0000
ffff!!b	chr17:80786143-80786448(+)$1	305	7	14	21.0000
:::::::	chr17:76889339-76889551(-)$1	212	0	7	21.0000
ee:::::	chr9:96411944-96412252(+)$1	308	134	141	21.0000
:::::ff	chr7:4288213-4288461(+)$1	248	45	52	21.0000
cc:::::	chr22:47555081-47555303(+)$1	222	92	99	21.0000
:::::::	chr14:104341385-104341664(-)$1	279	171	178	21.0000
EEE::::	chr7:157631940-157632227(-)$1	287	10	17	21.0000
B::::::	chr11:2152770-2152976(-)$1	206	2	9	21.0000
:::::::	chr6:159048001-159048225(+)$1	224	13	20	21.0000
:::::::	chr19:6717415-6717684(-)$1	269	21	28	21.0000
:::::::	chr22:47554544-47554778(+)$1	234	38	45	21.0000
:::::::	chr5:150487470-150487722(-)$1	252	1	8	21.0000
D}HHHHH	chr9:138915623-138915892(-)$1	269	211	218	21.0000
:::::::	chr22:47401476-47401730(+)$1	254	9	16	21.0000
D}A}FFF	chr18:74116776-74117053(-)$1	277	187	194	21.0000
zzzzzzz	chr11:2153200-2153402(-)$1	202	68	75	21.0000
cc[bb[g	chr18:74608651-74608935(+)$1	284	33	40	21.0000
:::::::	chr3:127865572-127865860(-)$1	288	186	193	21.0000
EE:::::	chr19:54062669-54062934(+)$1	265	8	15	21.0000
:::::::	chr19:4036578-4036819(+)$1	241	14	21	21.0000
:::::::	chr17:4618779-4619048(+)$1	269	3	10	21.0000
:::::::	chr11:109988742-109989026(+)$1	284	46	53	21.0000
ddsssss	chr12:124999997-125000344(-)$1	347	8	15	21.0000
::dddda	chr2:203630731-203630992(+)$1	261	92	99	21.0000
:::::EE	chr17:55753573-55753822(+)$1	249	4	11	21.0000
:::::::	chr22:47555103-47555333(+)$1	230	70	77	21.0000
:::::::	chr19:6717394-6717615(-)$1	221	15	22	21.0000
zzzzzzz	chr11:2153238-2153441(-)$1	203	107	114	21.0000
HHHHHHH	chr2:239983163-239983427(-)$1	264	134	141	21.0000
gggg:::	chr15:25306643-25307016(+)$1	373	119	126	21.0000
B::::::	chr11:2152815-2153017(-)$1	202	5	12	21.0000
:::::::	chr19:33949274-33949529(-)$1	255	31	38	21.0000
C::::::	chr11:2153003-2153205(-)$1	202	9	16	21.0000
b::::::	chr11:2152710-2152913(-)$1	203	22	29	21.0000
ddvvvvv	chr18:6110585-6110841(-)$1	256	140	147	21.0000
B::::::	chr11:2152885-2153101(-)$1	216	2	9	21.0000

#DB
)......	chr1:235751203-235751498(-)$1	1	286	293	21.0000
.......	chr16:46949082-46949304(+)$1	1	99	106	21.0000
.......	chr22:47400299-47400547(+)$1	1	94	101	21.0000
.......	chr16:46949679-46949889(+)$1	1	2	9	21.0000
(......	chr11:2153010-2153215(-)$1	1	43	50	21.0000
.......	chr21:46949735-46949950(-)$1	1	25	32	21.0000
((.....	chr16:72921494-72921743(-)$1	1	58	65	21.0000
.......	chr7:94834182-94834434(+)$1	1	6	13	21.0000
.......	chr15:81192972-81193299(-)$1	1	269	276	21.0000
(......	chr12:689854-690157(-)$1	1	59	66	21.0000
.......	chr19:33949496-33949773(-)$1	1	54	61	21.0000
.......	chr17:55726577-55726830(+)$1	1	26	33	21.0000
......(	chr16:46949726-46949929(+)$1	1	117	124	21.0000
((((..(	chr17:80786143-80786448(+)$1	1	7	14	21.0000
.......	chr17:76889339-76889551(-)$1	1	0	7	21.0000
)).....	chr9:96411944-96412252(+)$1	1	134	141	21.0000
.....((	chr7:4288213-4288461(+)$1	1	45	52	21.0000
)).....	chr22:47555081-47555303(+)$1	1	92	99	21.0000
.......	chr14:104341385-104341664(-)$1	1	171	178	21.0000
(((....	chr7:157631940-157632227(-)$1	1	10	17	21.0000
(......	chr11:2152770-2152976(-)$1	1	2	9	21.0000
.......	chr6:159048001-159048225(+)$1	1	13	20	21.0000
.......	chr19:6717415-6717684(-)$1	1	21	28	21.0000
.......	chr22:47554544-47554778(+)$1	1	38	45	21.0000
.......	chr5:150487470-150487722(-)$1	1	1	8	21.0000
).)))))	chr9:138915623-138915892(-)$1	1	211	218	21.0000
.......	chr22:47401476-47401730(+)$1	1	9	16	21.0000
).).)))	chr18:74116776-74117053(-)$1	1	187	194	21.0000
.......	chr11:2153200-2153402(-)$1	1	68	75	21.0000
((.((.(	chr18:74608651-74608935(+)$1	1	33	40	21.0000
.......	chr3:127865572-127865860(-)$1	1	186	193	21.0000
((.....	chr19:54062669-54062934(+)$1	1	8	15	21.0000
.......	chr19:4036578-4036819(+)$1	1	14	21	21.0000
.......	chr17:4618779-4619048(+)$1	1	3	10	21.0000
.......	chr11:109988742-109989026(+)$1	1	46	53	21.0000
((.....	chr12:124999997-125000344(-)$1	1	8	15	21.0000
..(((((	chr2:203630731-203630992(+)$1	1	92	99	21.0000
.....((	chr17:55753573-55753822(+)$1	1	4	11	21.0000
.......	chr22:47555103-47555333(+)$1	1	70	77	21.0000
.......	chr19:6717394-6717615(-)$1	1	15	22	21.0000
.......	chr11:2153238-2153441(-)$1	1	107	114	21.0000
)))))))	chr2:239983163-239983427(-)$1	1	134	141	21.0000
))))...	chr15:25306643-25307016(+)$1	1	119	126	21.0000
(......	chr11:2152815-2153017(-)$1	1	5	12	21.0000
.......	chr19:33949274-33949529(-)$1	1	31	38	21.0000
(......	chr11:2153003-2153205(-)$1	1	9	16	21.0000
)......	chr11:2152710-2152913(-)$1	1	22	29	21.0000
((.....	chr18:6110585-6110841(-)$1	1	140	147	21.0000
(......	chr11:2152885-2153101(-)$1	1	2	9	21.0000

#PSSM
c : 0.89	C : 0.10	
a : 0.89	A : 0.10	
c : 0.89	C : 0.10	
a : 0.89	A : 0.10	
c : 0.89	C : 0.10	
a : 0.89	A : 0.10	
c : 0.89	C : 0.10	

#score	1029.0000000000005
#seq	49
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_CDS_m1_run2.nuc.txt

#NT
UGCCGGGG	chr6:42984771-42985144(+)$1	373	120	128	15.1538
GGCCUGGG	chr13:22178023-22178318(-)$1	295	66	74	15.9230
GGCCGGGG	chr5:172410828-172411071(+)$1	243	189	197	19.6923
ggccgggg	chr2:54197731-54197981(-)$1	250	10	18	19.6923
GCCCGGGG	chr15:34393730-34394014(-)$1	284	51	59	15.0769
GGCCGUGG	chr16:2867727-2868036(+)$1	309	140	148	15.7692
GACCGGGG	chr6:31830404-31830686(-)$1	282	26	34	15.1538
GGCCGAGG	chr20:2644260-2644505(-)$1	245	100	108	15.5384
ggccgggg	chr19:2236052-2236281(-)$1	229	170	178	19.6923
GGCCUGGG	chr6:10749374-10749604(+)$1	230	65	73	15.9230
ggccgggg	chr6:32157579-32157840(-)$1	261	187	195	19.6923
GGCUGGGG	chr7:140396527-140396743(+)$1	216	125	133	16.0769
GGCAGGGG	chr12:111180411-111180678(-)$1	267	30	38	15.7692
GGCCGGGC	chr14:77924354-77924698(+)$1	344	297	305	15.5384
GGCCGGGA	chr8:98788044-98788287(+)$1	243	79	87	15.3846
gggcgggg	chr12:22199105-22199464(+)$1	359	10	18	15.2307
GGCCGGCG	chr5:176074553-176074803(+)$1	250	41	49	15.2307
ggcugggg	chr12:122186016-122186340(+)$1	324	13	21	16.0769
ggccgggg	chr6:32157481-32157762(-)$1	281	109	117	19.6923
GGCCGUGG	chr1:154245739-154246009(+)$1	270	151	159	15.7692
ggccgcgg	chr1:47133814-47134082(-)$1	268	35	43	15.8461
GGCCCGGG	chr14:96001388-96001660(+)$1	272	1	9	15.6923
GGCCGGUG	chr7:2284190-2284462(+)$1	272	106	114	15.2307
GGGCGGGG	chr3:48646597-48646837(-)$1	240	13	21	15.2307
GGCAGGGG	chr2:20251173-20251423(-)$1	250	6	14	15.7692
ggccgggg	chr8:25315623-25315952(-)$1	329	265	273	19.6923
GGCGGGGG	chr7:156433037-156433284(-)$1	247	103	111	15.9230
GGCCCGGG	chr1:234509875-234510173(+)$1	298	157	165	15.6923
GGGCGGGG	chr11:2405799-2406099(+)$1	300	32	40	15.2307
GGCUGGGG	chr1:151162429-151162704(-)$1	275	115	123	16.0769
GGCUGGGG	chr4:53245-53488(+)$1	243	167	175	16.0769
GGCUGGGG	chr17:75315708-75315988(+)$1	280	37	45	16.0769
GGCCGUGG	chr11:114310170-114310472(+)$1	302	56	64	15.7692
GGCCGGGC	chr16:75498330-75498611(-)$1	281	148	156	15.5384
GGCCGCGG	chr1:110946471-110946759(-)$1	288	100	108	15.8461
CGCCGGGG	chr7:140396456-140396727(+)$1	271	24	32	15.1538
UGCCGGGG	chr17:5341419-5341694(-)$1	275	240	248	15.1538
GGCCUGGG	chr17:27215861-27216110(-)$1	249	112	120	15.9230
GGCCGCGG	chr3:139108285-139108516(-)$1	231	199	207	15.8461
GGCCUGGG	chr17:27215910-27216146(-)$1	236	148	156	15.9230
ggcggggg	chr7:77166715-77166978(+)$1	263	107	115	15.9230
GGCCGGGU	chr1:225965590-225965815(+)$1	225	2	10	15.3076
GGCGGGGG	chr19:39138225-39138529(+)$1	304	229	237	15.9230
GGCCAGGG	chr16:30905081-30905351(-)$1	270	194	202	15.5384
GUCCGGGG	chr22:42475633-42475902(+)$1	269	183	191	15.0769
GGCUGGGG	chr3:48643105-48643393(-)$1	288	55	63	16.0769
GGCCGGUG	chr16:87902807-87903065(-)$1	258	21	29	15.2307
GGCCGGGG	chr22:50873157-50873540(+)$1	383	32	40	19.6923
GGUCGGGG	chr19:4037224-4037538(+)$1	314	14	22	15.0769
ggccgggg	chr9:101867461-101867685(+)$1	224	215	223	19.6923
GGCCCGGG	chr7:1049623-1049877(-)$1	254	114	122	15.6923
GGCCGGCG	chr19:47634055-47634387(+)$1	332	235	243	15.2307
GGCCGGGC	chr21:46233814-46234120(-)$1	306	142	150	15.5384
GGCCUGGG	chr19:1388467-1388691(+)$1	224	15	23	15.9230
GGCCGGGC	chr7:23338931-23339323(+)$1	392	44	52	15.5384
GGCCGCGG	chr19:1407575-1407876(+)$1	301	99	107	15.8461
CGCCGGGG	chr19:18652415-18652748(-)$1	333	12	20	15.1538
GGCGGGGG	chr16:30537564-30537833(-)$1	269	12	20	15.9230
ggccgggg	chrX:20284609-20284862(-)$1	253	98	106	19.6923
GACCGGGG	chr22:50017157-50017429(-)$1	272	81	89	15.1538
GGCCUGGG	chr13:115000355-115000702(+)$1	347	25	33	15.9230
GGCCGCGG	chr1:6845435-6845745(+)$1	310	45	53	15.8461
GGCCGGAG	chr11:62368812-62369055(-)$1	243	107	115	15.1538
GGCCGUGG	chr12:96252735-96252955(+)$1	220	103	111	15.7692

#otherMatches

#Struct PSSM
====DDDD	chr8:29940260-29940518(-)$1	258	69	77	15.3846
Dcccnnnn	chr6:42984771-42985144(+)$1	373	120	128	15.1538
FFFBBDDD	chr13:22178023-22178318(-)$1	295	66	74	15.9230
eeeeffff	chr5:172410828-172411071(+)$1	243	189	197	19.6923
B{DDDDLL	chr2:54197731-54197981(-)$1	250	10	18	19.6923
]ccca]cc	chr15:34393730-34394014(-)$1	284	51	59	15.0769
DGGGGGGG	chr16:2867727-2868036(+)$1	309	140	148	15.7692
dddd[ddd	chr6:31830404-31830686(-)$1	282	26	34	15.1538
dd22eeee	chr20:2644260-2644505(-)$1	245	100	108	15.5384
dddd[ddd	chr19:2236052-2236281(-)$1	229	170	178	19.6923
gggg:eee	chr6:10749374-10749604(+)$1	230	65	73	15.9230
eeeennnn	chr6:32157579-32157840(-)$1	261	187	195	19.6923
dddddddd	chr7:140396527-140396743(+)$1	216	125	133	16.0769
eee[ccco	chr12:111180411-111180678(-)$1	267	30	38	15.7692
GGGGGEEE	chr14:77924354-77924698(+)$1	344	297	305	15.5384
$$$ggggg	chr8:98788044-98788287(+)$1	243	79	87	15.3846
a[ccc[cc	chr12:22199105-22199464(+)$1	359	10	18	15.2307
deeeee]d	chr5:176074553-176074803(+)$1	250	41	49	15.2307
EEEE::dd	chr12:122186016-122186340(+)$1	324	13	21	16.0769
mccc]ddd	chr6:32157481-32157762(-)$1	281	109	117	19.6923
ee[a"""f	chr1:154245739-154246009(+)$1	270	151	159	15.7692
CCffffff	chr1:47133814-47134082(-)$1	268	35	43	15.8461
:BBKKGGG	chr14:96001388-96001660(+)$1	272	1	9	15.6923
===fffff	chr7:2284190-2284462(+)$1	272	106	114	15.2307
]ccc:EEE	chr3:48646597-48646837(-)$1	240	13	21	15.2307
eee!!amm	chr2:20251173-20251423(-)$1	250	6	14	15.7692
ffffff""	chr8:25315623-25315952(-)$1	329	265	273	19.6923
IIIIIIII	chr7:156433037-156433284(-)$1	247	103	111	15.9230
FFFddddq	chr1:234509875-234510173(+)$1	298	157	165	15.6923
gccc]ddd	chr11:2405799-2406099(+)$1	300	32	40	15.2307
hhhhlllh	chr1:151162429-151162704(-)$1	275	115	123	16.0769
hhhhh::H	chr4:53245-53488(+)$1	243	167	175	16.0769
EEeeeeen	chr17:75315708-75315988(+)$1	280	37	45	16.0769
dddd22cc	chr11:114310170-114310472(+)$1	302	56	64	15.7692
fffggggg	chr16:75498330-75498611(-)$1	281	148	156	15.5384
{IIIIIII	chr1:110946471-110946759(-)$1	288	100	108	15.8461
NNGGGGGG	chr7:140396456-140396727(+)$1	271	24	32	15.1538
d]ddddBB	chr17:5341419-5341694(-)$1	275	240	248	15.1538
gggmmmmg	chr17:27215861-27216110(-)$1	249	112	120	15.9230
ggggggqq	chr3:139108285-139108516(-)$1	231	199	207	15.8461
cceeeeed	chr17:27215910-27216146(-)$1	236	148	156	15.9230
[dddd!!a	chr7:77166715-77166978(+)$1	263	107	115	15.9230
cccbbddd	chr1:225965590-225965815(+)$1	225	2	10	15.3076
cbb]eeee	chr19:39138225-39138529(+)$1	304	229	237	15.9230
h[ffffff	chr16:30905081-30905351(-)$1	270	194	202	15.5384
dddd22gg	chr22:42475633-42475902(+)$1	269	183	191	15.0769
GGGGGG::	chr3:48643105-48643393(-)$1	288	55	63	16.0769
fffff[bb	chr16:87902807-87903065(-)$1	258	21	29	15.2307
GGGGGGG:	chr22:50873157-50873540(+)$1	383	32	40	19.6923
dddd]ccc	chr19:4037224-4037538(+)$1	314	14	22	15.0769
eee]dddd	chr9:101867461-101867685(+)$1	224	215	223	19.6923
bb!!ccc[	chr7:1049623-1049877(-)$1	254	114	122	15.6923
EEEE}EEE	chr19:47634055-47634387(+)$1	332	235	243	15.2307
eeeeeppp	chr21:46233814-46234120(-)$1	306	142	150	15.5384
!cccffff	chr19:1388467-1388691(+)$1	224	15	23	15.9230
fff[====	chr7:23338931-23339323(+)$1	392	44	52	15.5384
ccc]eeee	chr19:1407575-1407876(+)$1	301	99	107	15.8461
"""hhhhh	chr19:18652415-18652748(-)$1	333	12	20	15.1538
eeeee[bb	chr16:30537564-30537833(-)$1	269	12	20	15.9230
DDDIIIII	chrX:20284609-20284862(-)$1	253	98	106	19.6923
]bb]eeee	chr22:50017157-50017429(-)$1	272	81	89	15.1538
A{GGGGGG	chr13:115000355-115000702(+)$1	347	25	33	15.9230
[ffffffb	chr1:6845435-6845745(+)$1	310	45	53	15.8461
[ddddmmm	chr11:62368812-62369055(-)$1	243	107	115	15.1538
FFFFFF::	chr12:96252735-96252955(+)$1	220	103	111	15.7692

#DB
))))((((	chr8:29940260-29940518(-)$1	1	69	77	15.3846
((((....	chr6:42984771-42985144(+)$1	1	120	128	15.1538
)))))(((	chr13:22178023-22178318(-)$1	1	66	74	15.9230
))))))))	chr5:172410828-172411071(+)$1	1	189	197	19.6923
(.((((..	chr2:54197731-54197981(-)$1	1	10	18	19.6923
.)))).))	chr15:34393730-34394014(-)$1	1	51	59	15.0769
))))))))	chr16:2867727-2868036(+)$1	1	140	148	15.7692
((((.(((	chr6:31830404-31830686(-)$1	1	26	34	15.1538
))..))))	chr20:2644260-2644505(-)$1	1	100	108	15.5384
((((.(((	chr19:2236052-2236281(-)$1	1	170	178	19.6923
)))).(((	chr6:10749374-10749604(+)$1	1	65	73	15.9230
((((....	chr6:32157579-32157840(-)$1	1	187	195	19.6923
))))((((	chr7:140396527-140396743(+)$1	1	125	133	16.0769
(((.(((.	chr12:111180411-111180678(-)$1	1	30	38	15.7692
))))))))	chr14:77924354-77924698(+)$1	1	297	305	15.5384
...(((((	chr8:98788044-98788287(+)$1	1	79	87	15.3846
(.(((.((	chr12:22199105-22199464(+)$1	1	10	18	15.2307
)))))).)	chr5:176074553-176074803(+)$1	1	41	49	15.2307
((((..((	chr12:122186016-122186340(+)$1	1	13	21	16.0769
.))).)))	chr6:32157481-32157762(-)$1	1	109	117	19.6923
((.(...(	chr1:154245739-154246009(+)$1	1	151	159	15.7692
((((((((	chr1:47133814-47134082(-)$1	1	35	43	15.8461
.((..(((	chr14:96001388-96001660(+)$1	1	1	9	15.6923
)))(((((	chr7:2284190-2284462(+)$1	1	106	114	15.2307
.))).(((	chr3:48646597-48646837(-)$1	1	13	21	15.2307
(((..(..	chr2:20251173-20251423(-)$1	1	6	14	15.7692
((((((..	chr8:25315623-25315952(-)$1	1	265	273	19.6923
))))))))	chr7:156433037-156433284(-)$1	1	103	111	15.9230
(((((((.	chr1:234509875-234510173(+)$1	1	157	165	15.6923
)))).)))	chr11:2405799-2406099(+)$1	1	32	40	15.2307
((((...)	chr1:151162429-151162704(-)$1	1	115	123	16.0769
)))))..)	chr4:53245-53488(+)$1	1	167	175	16.0769
(((((((.	chr17:75315708-75315988(+)$1	1	37	45	16.0769
))))..))	chr11:114310170-114310472(+)$1	1	56	64	15.7692
)))(((((	chr16:75498330-75498611(-)$1	1	148	156	15.5384
.(((((((	chr1:110946471-110946759(-)$1	1	100	108	15.8461
..((((((	chr7:140396456-140396727(+)$1	1	24	32	15.1538
).))))))	chr17:5341419-5341694(-)$1	1	240	248	15.1538
(((....)	chr17:27215861-27216110(-)$1	1	112	120	15.9230
((((((..	chr3:139108285-139108516(-)$1	1	199	207	15.8461
((((((((	chr17:27215910-27216146(-)$1	1	148	156	15.9230
.((((..(	chr7:77166715-77166978(+)$1	1	107	115	15.9230
((((((((	chr1:225965590-225965815(+)$1	1	2	10	15.3076
))).))))	chr19:39138225-39138529(+)$1	1	229	237	15.9230
(.((((((	chr16:30905081-30905351(-)$1	1	194	202	15.5384
))))..))	chr22:42475633-42475902(+)$1	1	183	191	15.0769
((((((..	chr3:48643105-48643393(-)$1	1	55	63	16.0769
(((((.((	chr16:87902807-87903065(-)$1	1	21	29	15.2307
(((((((.	chr22:50873157-50873540(+)$1	1	32	40	19.6923
)))).)))	chr19:4037224-4037538(+)$1	1	14	22	15.0769
))).))))	chr9:101867461-101867685(+)$1	1	215	223	19.6923
((..(((.	chr7:1049623-1049877(-)$1	1	114	122	15.6923
)))).)))	chr19:47634055-47634387(+)$1	1	235	243	15.2307
(((((...	chr21:46233814-46234120(-)$1	1	142	150	15.5384
.(((((((	chr19:1388467-1388691(+)$1	1	15	23	15.9230
(((.((((	chr7:23338931-23339323(+)$1	1	44	52	15.5384
))).))))	chr19:1407575-1407876(+)$1	1	99	107	15.8461
...(((((	chr19:18652415-18652748(-)$1	1	12	20	15.1538
(((((.((	chr16:30537564-30537833(-)$1	1	12	20	15.9230
((((((((	chrX:20284609-20284862(-)$1	1	98	106	19.6923
.)).))))	chr22:50017157-50017429(-)$1	1	81	89	15.1538
(.((((((	chr13:115000355-115000702(+)$1	1	25	33	15.9230
.(((((((	chr1:6845435-6845745(+)$1	1	45	53	15.8461
.((((...	chr11:62368812-62369055(-)$1	1	107	115	15.1538
))))))..	chr12:96252735-96252955(+)$1	1	103	111	15.7692

#PSSM
G : 0.76	g : 0.16	U : 0.03	C : 0.03	
G : 0.76	g : 0.16	A : 0.03	C : 0.01	U : 0.01	
C : 0.78	c : 0.15	G : 0.03	g : 0.01	U : 0.01	
C : 0.67	c : 0.13	U : 0.07	G : 0.04	A : 0.03	u : 0.01	g : 0.01	
G : 0.67	g : 0.16	U : 0.09	C : 0.04	A : 0.01	
G : 0.69	g : 0.15	U : 0.06	C : 0.06	A : 0.01	c : 0.01	
G : 0.75	g : 0.16	C : 0.03	U : 0.03	A : 0.01	
G : 0.72	g : 0.16	C : 0.06	A : 0.03	U : 0.01	

#score	1051.0769230769224
#seq	65
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_UTR_m2_run2.nuc.txt

#NT
gcc	chr15:91445995-91446248(+)$1	253	12	15	8.9999
GCC	chr3:9516630-9516855(+)$1	225	84	87	8.9999
GCC	chr1:2441474-2441745(-)$1	271	31	34	8.9999
GCC	chr20:61438418-61438692(+)$1	274	2	5	8.9999
GCC	chr20:31115565-31115871(-)$1	306	8	11	8.9999
GCC	chr3:142747175-142747458(+)$1	283	31	34	8.9999
GCC	chr17:27071792-27072034(+)$1	242	166	169	8.9999
GCC	chr19:1881775-1882007(-)$1	232	50	53	8.9999
GCC	chr19:54972082-54972299(+)$1	217	0	3	8.9999
GCC	chr17:42457867-42458185(-)$1	318	1	4	8.9999
GCC	chr11:122929965-122930174(-)$1	209	32	35	8.9999
gcc	chr16:577711-577990(+)$1	279	25	28	8.9999
GCC	chr8:145690344-145690617(-)$1	273	3	6	8.9999
GCC	chr5:137728709-137728979(+)$1	270	29	32	8.9999
GCC	chr20:55982467-55982711(+)$1	244	3	6	8.9999
GCC	chr7:1887647-1887894(-)$1	247	2	5	8.9999
GCC	chr19:19738210-19738465(-)$1	255	198	201	8.9999
GCC	chr1:46124674-46124957(-)$1	283	149	152	8.9999
gcc	chrX:153686650-153686912(+)$1	262	8	11	8.9999
GCC	chr17:42397702-42397923(-)$1	221	4	7	8.9999
GCC	chr7:150774527-150774793(-)$1	266	13	16	8.9999
GCC	chr2:232574426-232574774(+)$1	348	2	5	8.9999
GCC	chr11:9166522-9166814(-)$1	292	24	27	8.9999
GCC	chr16:89627202-89627420(+)$1	218	26	29	8.9999
GCC	chr7:72419027-72419299(-)$1	272	7	10	8.9999
gcc	chr11:66133906-66134214(-)$1	308	19	22	8.9999
GCC	chr9:140260958-140261229(-)$1	271	5	8	8.9999
GCC	chr12:57917648-57917935(+)$1	287	26	29	8.9999
GCC	chr8:101962577-101962828(-)$1	251	40	43	8.9999
GCC	chr16:28969882-28970183(+)$1	301	18	21	8.9999
GCC	chr1:70697799-70698108(+)$1	309	218	221	8.9999
GCC	chr19:1470156-1470430(-)$1	274	1	4	8.9999
GCC	chr8:41513125-41513417(-)$1	292	10	13	8.9999
GCC	chr17:27050659-27050866(+)$1	207	71	74	8.9999
GCC	chr17:27185432-27185724(+)$1	292	7	10	8.9999
GCC	chr17:27050645-27050854(+)$1	209	4	7	8.9999
GCC	chr18:47017936-47018174(-)$1	238	52	55	8.9999
gcc	chr15:89877006-89877257(-)$1	251	6	9	8.9999
gcc	chr19:54677972-54678269(-)$1	297	29	32	8.9999
GCC	chr11:57193109-57193351(-)$1	242	36	39	8.9999
GCC	chr3:9862067-9862357(+)$1	290	5	8	8.9999
GCC	chr16:1361830-1362077(+)$1	247	13	16	8.9999
GCC	chr1:226053550-226053854(-)$1	304	3	6	8.9999
GCC	chr22:20052217-20052511(+)$1	294	4	7	8.9999
gcc	chr19:1883581-1883827(-)$1	246	164	167	8.9999
GCC	chr3:49049864-49050112(+)$1	248	9	12	8.9999
GCC	chr16:89788792-89789060(+)$1	268	5	8	8.9999
GCC	chr19:1883189-1883431(-)$1	242	4	7	8.9999
GCC	chr19:10270332-10270589(-)$1	257	93	96	8.9999
GCC	chr22:26922114-26922381(-)$1	267	7	10	8.9999
gcc	chr22:50013599-50013825(-)$1	226	124	127	8.9999
GCC	chr3:12881709-12881955(-)$1	246	33	36	8.9999
GCC	chr2:97534054-97534315(-)$1	261	10	13	8.9999
GCC	chr17:17716162-17716411(-)$1	249	118	121	8.9999
GCC	chr17:80223533-80223781(-)$1	248	103	106	8.9999
GCC	chr16:20855792-20856087(+)$1	295	106	109	8.9999
GCC	chr20:34214168-34214418(-)$1	250	26	29	8.9999
GCC	chr16:89627220-89627436(+)$1	216	8	11	8.9999
GCC	chr16:66930-67217(-)$1	287	19	22	8.9999
GCC	chr20:62330184-62330436(-)$1	252	214	217	8.9999
GCC	chr17:7126985-7127243(+)$1	258	16	19	8.9999
GCC	chr1:182360241-182360494(-)$1	253	4	7	8.9999
GCC	chr7:128036641-128036921(-)$1	280	153	156	8.9999
GCC	chr17:76122911-76123191(-)$1	280	16	19	8.9999
GCC	chr17:79680146-79680417(+)$1	271	2	5	8.9999
GCC	chr3:119153588-119153905(-)$1	317	72	75	8.9999
GCC	chr3:128514069-128514360(+)$1	291	33	36	8.9999
GCC	chr16:2163184-2163442(-)$1	258	20	23	8.9999
GCC	chr19:7997705-7997974(-)$1	269	25	28	8.9999
gcc	chr1:43142102-43142363(+)$1	261	7	10	8.9999
GCC	chr19:49606050-49606305(+)$1	255	55	58	8.9999
GCC	chr10:121336123-121336368(-)$1	245	125	128	8.9999
GCC	chr16:448829-449109(+)$1	280	40	43	8.9999
GCC	chr19:11665047-11665310(-)$1	263	17	20	8.9999
GCC	chr12:122237774-122238020(-)$1	246	12	15	8.9999
gcc	chr17:79880939-79881234(-)$1	295	74	77	8.9999
GCC	chr16:89787355-89787651(+)$1	296	0	3	8.9999
GCC	chrX:48434391-48434665(+)$1	274	17	20	8.9999
GCC	chr8:144668908-144669165(-)$1	257	56	59	8.9999
GCC	chr3:15091311-15091602(-)$1	291	123	126	8.9999
GCC	chr19:10792562-10792816(+)$1	254	11	14	8.9999
GCC	chr19:54971706-54971957(+)$1	251	4	7	8.9999
GCC	chr12:54801544-54801836(-)$1	292	13	16	8.9999
gcc	chr11:122929515-122929717(-)$1	202	72	75	8.9999
GCC	chr16:585943-586183(+)$1	240	18	21	8.9999
GCC	chr3:9516655-9516882(+)$1	227	59	62	8.9999
GCC	chr16:24833241-24833540(+)$1	299	22	25	8.9999
GCC	chr12:133398797-133399059(-)$1	262	242	245	8.9999
GCC	chr1:114447282-114447548(-)$1	266	48	51	8.9999
GCC	chr11:57193206-57193459(-)$1	253	72	75	8.9999
GCC	chr18:47017932-47018136(-)$1	204	14	17	8.9999
GCC	chr9:134360193-134360464(+)$1	271	11	14	8.9999
GCC	chr19:49606593-49606840(+)$1	247	170	173	8.9999
GCC	chr7:5569500-5569751(-)$1	251	54	57	8.9999
GCC	chr16:50342075-50342343(+)$1	268	1	4	8.9999
GCC	chr9:139560098-139560368(+)$1	270	16	19	8.9999
GCC	chr11:611790-612093(+)$1	303	8	11	8.9999
GCC	chr11:122929959-122930161(-)$1	202	19	22	8.9999

#otherMatches

#Struct PSSM
:dd	chr2:192550216-192550512(+)$1	296	126	129	8.9999
hhh	chr15:91445995-91446248(+)$1	253	12	15	8.9999
eee	chr3:9516630-9516855(+)$1	225	84	87	8.9999
BBL	chr1:2441474-2441745(-)$1	271	31	34	8.9999
:CC	chr20:61438418-61438692(+)$1	274	2	5	8.9999
hhh	chr20:31115565-31115871(-)$1	306	8	11	8.9999
ccd	chr3:142747175-142747458(+)$1	283	31	34	8.9999
fff	chr17:27071792-27072034(+)$1	242	166	169	8.9999
ddd	chr19:1881775-1882007(-)$1	232	50	53	8.9999
::e	chr19:54972082-54972299(+)$1	217	0	3	8.9999
CCC	chr17:42457867-42458185(-)$1	318	1	4	8.9999
GGK	chr11:122929965-122930174(-)$1	209	32	35	8.9999
a33	chr16:577711-577990(+)$1	279	25	28	8.9999
EEL	chr8:145690344-145690617(-)$1	273	3	6	8.9999
ddd	chr5:137728709-137728979(+)$1	270	29	32	8.9999
EE{	chr20:55982467-55982711(+)$1	244	3	6	8.9999
c""	chr7:1887647-1887894(-)$1	247	2	5	8.9999
^^^	chr19:19738210-19738465(-)$1	255	198	201	8.9999
DDD	chr1:46124674-46124957(-)$1	283	149	152	8.9999
GGG	chrX:153686650-153686912(+)$1	262	8	11	8.9999
DDD	chr17:42397702-42397923(-)$1	221	4	7	8.9999
fff	chr7:150774527-150774793(-)$1	266	13	16	8.9999
CCC	chr2:232574426-232574774(+)$1	348	2	5	8.9999
ddd	chr11:9166522-9166814(-)$1	292	24	27	8.9999
===	chr16:89627202-89627420(+)$1	218	26	29	8.9999
DD{	chr7:72419027-72419299(-)$1	272	7	10	8.9999
bba	chr11:66133906-66134214(-)$1	308	19	22	8.9999
HHH	chr9:140260958-140261229(-)$1	271	5	8	8.9999
eee	chr12:57917648-57917935(+)$1	287	26	29	8.9999
CCC	chr8:101962577-101962828(-)$1	251	40	43	8.9999
mmm	chr16:28969882-28970183(+)$1	301	18	21	8.9999
fff	chr1:70697799-70698108(+)$1	309	218	221	8.9999
CCC	chr19:1470156-1470430(-)$1	274	1	4	8.9999
ccc	chr8:41513125-41513417(-)$1	292	10	13	8.9999
a]e	chr17:27050659-27050866(+)$1	207	71	74	8.9999
DOO	chr17:27185432-27185724(+)$1	292	7	10	8.9999
DOO	chr17:27050645-27050854(+)$1	209	4	7	8.9999
qee	chr18:47017936-47018174(-)$1	238	52	55	8.9999
JJJ	chr15:89877006-89877257(-)$1	251	6	9	8.9999
ddd	chr19:54677972-54678269(-)$1	297	29	32	8.9999
fff	chr11:57193109-57193351(-)$1	242	36	39	8.9999
ccm	chr3:9862067-9862357(+)$1	290	5	8	8.9999
EEE	chr16:1361830-1362077(+)$1	247	13	16	8.9999
EEK	chr1:226053550-226053854(-)$1	304	3	6	8.9999
III	chr22:20052217-20052511(+)$1	294	4	7	8.9999
ggg	chr19:1883581-1883827(-)$1	246	164	167	8.9999
III	chr3:49049864-49050112(+)$1	248	9	12	8.9999
::f	chr16:89788792-89789060(+)$1	268	5	8	8.9999
DDD	chr19:1883189-1883431(-)$1	242	4	7	8.9999
dd!	chr19:10270332-10270589(-)$1	257	93	96	8.9999
ECC	chr22:26922114-26922381(-)$1	267	7	10	8.9999
dd:	chr22:50013599-50013825(-)$1	226	124	127	8.9999
ggl	chr3:12881709-12881955(-)$1	246	33	36	8.9999
hhh	chr2:97534054-97534315(-)$1	261	10	13	8.9999
ddd	chr17:17716162-17716411(-)$1	249	118	121	8.9999
lll	chr17:80223533-80223781(-)$1	248	103	106	8.9999
FFF	chr16:20855792-20856087(+)$1	295	106	109	8.9999
::E	chr20:34214168-34214418(-)$1	250	26	29	8.9999
===	chr16:89627220-89627436(+)$1	216	8	11	8.9999
EEC	chr16:66930-67217(-)$1	287	19	22	8.9999
GGG	chr20:62330184-62330436(-)$1	252	214	217	8.9999
{DD	chr17:7126985-7127243(+)$1	258	16	19	8.9999
{JJ	chr1:182360241-182360494(-)$1	253	4	7	8.9999
fff	chr7:128036641-128036921(-)$1	280	153	156	8.9999
mmm	chr17:76122911-76123191(-)$1	280	16	19	8.9999
ggg	chr17:79680146-79680417(+)$1	271	2	5	8.9999
ddd	chr3:119153588-119153905(-)$1	317	72	75	8.9999
DD{	chr3:128514069-128514360(+)$1	291	33	36	8.9999
ccc	chr16:2163184-2163442(-)$1	258	20	23	8.9999
CCC	chr19:7997705-7997974(-)$1	269	25	28	8.9999
CKK	chr1:43142102-43142363(+)$1	261	7	10	8.9999
cc!	chr19:49606050-49606305(+)$1	255	55	58	8.9999
c55	chr10:121336123-121336368(-)$1	245	125	128	8.9999
EEE	chr16:448829-449109(+)$1	280	40	43	8.9999
eee	chr19:11665047-11665310(-)$1	263	17	20	8.9999
CCC	chr12:122237774-122238020(-)$1	246	12	15	8.9999
dd!	chr17:79880939-79881234(-)$1	295	74	77	8.9999
::d	chr16:89787355-89787651(+)$1	296	0	3	8.9999
ppp	chrX:48434391-48434665(+)$1	274	17	20	8.9999
ff#	chr8:144668908-144669165(-)$1	257	56	59	8.9999
fff	chr3:15091311-15091602(-)$1	291	123	126	8.9999
ooe	chr19:10792562-10792816(+)$1	254	11	14	8.9999
bbm	chr19:54971706-54971957(+)$1	251	4	7	8.9999
CCC	chr12:54801544-54801836(-)$1	292	13	16	8.9999
CCC	chr11:122929515-122929717(-)$1	202	72	75	8.9999
FLL	chr16:585943-586183(+)$1	240	18	21	8.9999
eee	chr3:9516655-9516882(+)$1	227	59	62	8.9999
KDD	chr16:24833241-24833540(+)$1	299	22	25	8.9999
???	chr12:133398797-133399059(-)$1	262	242	245	8.9999
fff	chr1:114447282-114447548(-)$1	266	48	51	8.9999
ee]	chr11:57193206-57193459(-)$1	253	72	75	8.9999
qee	chr18:47017932-47018136(-)$1	204	14	17	8.9999
ooo	chr9:134360193-134360464(+)$1	271	11	14	8.9999
33d	chr19:49606593-49606840(+)$1	247	170	173	8.9999
eee	chr7:5569500-5569751(-)$1	251	54	57	8.9999
eee	chr16:50342075-50342343(+)$1	268	1	4	8.9999
[dd	chr9:139560098-139560368(+)$1	270	16	19	8.9999
ddd	chr11:611790-612093(+)$1	303	8	11	8.9999
GGK	chr11:122929959-122930161(-)$1	202	19	22	8.9999

#DB
.((	chr2:192550216-192550512(+)$1	1	126	129	8.9999
(((	chr15:91445995-91446248(+)$1	1	12	15	8.9999
)))	chr3:9516630-9516855(+)$1	1	84	87	8.9999
((.	chr1:2441474-2441745(-)$1	1	31	34	8.9999
.((	chr20:61438418-61438692(+)$1	1	2	5	8.9999
(((	chr20:31115565-31115871(-)$1	1	8	11	8.9999
(((	chr3:142747175-142747458(+)$1	1	31	34	8.9999
)))	chr17:27071792-27072034(+)$1	1	166	169	8.9999
)))	chr19:1881775-1882007(-)$1	1	50	53	8.9999
..(	chr19:54972082-54972299(+)$1	1	0	3	8.9999
(((	chr17:42457867-42458185(-)$1	1	1	4	8.9999
((.	chr11:122929965-122930174(-)$1	1	32	35	8.9999
)..	chr16:577711-577990(+)$1	1	25	28	8.9999
((.	chr8:145690344-145690617(-)$1	1	3	6	8.9999
)))	chr5:137728709-137728979(+)$1	1	29	32	8.9999
((.	chr20:55982467-55982711(+)$1	1	3	6	8.9999
(..	chr7:1887647-1887894(-)$1	1	2	5	8.9999
...	chr19:19738210-19738465(-)$1	1	198	201	8.9999
)))	chr1:46124674-46124957(-)$1	1	149	152	8.9999
(((	chrX:153686650-153686912(+)$1	1	8	11	8.9999
(((	chr17:42397702-42397923(-)$1	1	4	7	8.9999
(((	chr7:150774527-150774793(-)$1	1	13	16	8.9999
(((	chr2:232574426-232574774(+)$1	1	2	5	8.9999
(((	chr11:9166522-9166814(-)$1	1	24	27	8.9999
(((	chr16:89627202-89627420(+)$1	1	26	29	8.9999
((.	chr7:72419027-72419299(-)$1	1	7	10	8.9999
(((	chr11:66133906-66134214(-)$1	1	19	22	8.9999
(((	chr9:140260958-140261229(-)$1	1	5	8	8.9999
)))	chr12:57917648-57917935(+)$1	1	26	29	8.9999
(((	chr8:101962577-101962828(-)$1	1	40	43	8.9999
...	chr16:28969882-28970183(+)$1	1	18	21	8.9999
(((	chr1:70697799-70698108(+)$1	1	218	221	8.9999
(((	chr19:1470156-1470430(-)$1	1	1	4	8.9999
(((	chr8:41513125-41513417(-)$1	1	10	13	8.9999
).)	chr17:27050659-27050866(+)$1	1	71	74	8.9999
(..	chr17:27185432-27185724(+)$1	1	7	10	8.9999
(..	chr17:27050645-27050854(+)$1	1	4	7	8.9999
.))	chr18:47017936-47018174(-)$1	1	52	55	8.9999
(((	chr15:89877006-89877257(-)$1	1	6	9	8.9999
)))	chr19:54677972-54678269(-)$1	1	29	32	8.9999
(((	chr11:57193109-57193351(-)$1	1	36	39	8.9999
((.	chr3:9862067-9862357(+)$1	1	5	8	8.9999
(((	chr16:1361830-1362077(+)$1	1	13	16	8.9999
((.	chr1:226053550-226053854(-)$1	1	3	6	8.9999
(((	chr22:20052217-20052511(+)$1	1	4	7	8.9999
)))	chr19:1883581-1883827(-)$1	1	164	167	8.9999
(((	chr3:49049864-49050112(+)$1	1	9	12	8.9999
..(	chr16:89788792-89789060(+)$1	1	5	8	8.9999
(((	chr19:1883189-1883431(-)$1	1	4	7	8.9999
((.	chr19:10270332-10270589(-)$1	1	93	96	8.9999
(((	chr22:26922114-26922381(-)$1	1	7	10	8.9999
)).	chr22:50013599-50013825(-)$1	1	124	127	8.9999
((.	chr3:12881709-12881955(-)$1	1	33	36	8.9999
(((	chr2:97534054-97534315(-)$1	1	10	13	8.9999
(((	chr17:17716162-17716411(-)$1	1	118	121	8.9999
...	chr17:80223533-80223781(-)$1	1	103	106	8.9999
(((	chr16:20855792-20856087(+)$1	1	106	109	8.9999
..(	chr20:34214168-34214418(-)$1	1	26	29	8.9999
(((	chr16:89627220-89627436(+)$1	1	8	11	8.9999
(((	chr16:66930-67217(-)$1	1	19	22	8.9999
)))	chr20:62330184-62330436(-)$1	1	214	217	8.9999
.((	chr17:7126985-7127243(+)$1	1	16	19	8.9999
.((	chr1:182360241-182360494(-)$1	1	4	7	8.9999
)))	chr7:128036641-128036921(-)$1	1	153	156	8.9999
...	chr17:76122911-76123191(-)$1	1	16	19	8.9999
(((	chr17:79680146-79680417(+)$1	1	2	5	8.9999
)))	chr3:119153588-119153905(-)$1	1	72	75	8.9999
((.	chr3:128514069-128514360(+)$1	1	33	36	8.9999
(((	chr16:2163184-2163442(-)$1	1	20	23	8.9999
(((	chr19:7997705-7997974(-)$1	1	25	28	8.9999
(..	chr1:43142102-43142363(+)$1	1	7	10	8.9999
((.	chr19:49606050-49606305(+)$1	1	55	58	8.9999
)..	chr10:121336123-121336368(-)$1	1	125	128	8.9999
(((	chr16:448829-449109(+)$1	1	40	43	8.9999
(((	chr19:11665047-11665310(-)$1	1	17	20	8.9999
(((	chr12:122237774-122238020(-)$1	1	12	15	8.9999
((.	chr17:79880939-79881234(-)$1	1	74	77	8.9999
..(	chr16:89787355-89787651(+)$1	1	0	3	8.9999
...	chrX:48434391-48434665(+)$1	1	17	20	8.9999
((.	chr8:144668908-144669165(-)$1	1	56	59	8.9999
(((	chr3:15091311-15091602(-)$1	1	123	126	8.9999
..)	chr19:10792562-10792816(+)$1	1	11	14	8.9999
((.	chr19:54971706-54971957(+)$1	1	4	7	8.9999
(((	chr12:54801544-54801836(-)$1	1	13	16	8.9999
(((	chr11:122929515-122929717(-)$1	1	72	75	8.9999
(..	chr16:585943-586183(+)$1	1	18	21	8.9999
)))	chr3:9516655-9516882(+)$1	1	59	62	8.9999
.((	chr16:24833241-24833540(+)$1	1	22	25	8.9999
...	chr12:133398797-133399059(-)$1	1	242	245	8.9999
(((	chr1:114447282-114447548(-)$1	1	48	51	8.9999
)).	chr11:57193206-57193459(-)$1	1	72	75	8.9999
.))	chr18:47017932-47018136(-)$1	1	14	17	8.9999
...	chr9:134360193-134360464(+)$1	1	11	14	8.9999
..)	chr19:49606593-49606840(+)$1	1	170	173	8.9999
(((	chr7:5569500-5569751(-)$1	1	54	57	8.9999
(((	chr16:50342075-50342343(+)$1	1	1	4	8.9999
.((	chr9:139560098-139560368(+)$1	1	16	19	8.9999
(((	chr11:611790-612093(+)$1	1	8	11	8.9999
((.	chr11:122929959-122930161(-)$1	1	19	22	8.9999

#PSSM
G : 0.88	g : 0.11	
C : 0.88	c : 0.11	
C : 0.88	c : 0.11	

#score	890.9999999999998
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_CDS_m3_run2.nuc.txt

#NT
GUAGCUG	chr1:22155970-22156195(-)$1	225	34	41	13.8125
GGAGCUG	chr17:78092473-78092705(+)$1	232	17	24	17.6406
GGAGCUG	chr17:40269676-40269894(-)$1	218	138	145	17.6406
GGAGCAG	chr3:49722411-49722622(-)$1	211	136	143	13.9687
GGAGCUG	chr3:49053078-49053429(+)$1	351	185	192	17.6406
GGACCUG	chr20:57288897-57289163(+)$1	266	164	171	13.4218
GGACCUG	chr2:232673155-232673413(+)$1	258	88	95	13.4218
GCAGCUG	chr14:24029046-24029281(-)$1	235	47	54	14.3593
GGAGCUG	chr10:101606645-101606874(+)$1	229	155	162	17.6406
GGAGCUG	chr22:40805482-40805752(+)$1	270	82	89	17.6406
GGAGCAG	chr3:49722387-49722611(-)$1	224	125	132	13.9687
GGAGUUG	chr12:53701199-53701600(-)$1	401	1	8	13.1093
GGAGGUG	chr15:75650948-75651198(-)$1	250	183	190	13.1093
GGCGCUG	chr3:156865850-156866133(-)$1	283	96	103	13.6562
GGAGCUG	chr19:42411244-42411553(+)$1	309	112	119	17.6406
GGAGCUG	chr17:80399946-80400197(+)$1	251	136	143	17.6406
GGAGCAG	chr20:60885007-60885233(-)$1	226	117	124	13.9687
GCAGCUG	chr17:73823928-73824196(-)$1	268	42	49	14.3593
GCAGCUG	chr7:73010108-73010350(-)$1	242	137	144	14.3593
GGAGCAG	chr16:31201531-31201804(+)$1	273	31	38	13.9687
GGACCUG	chr16:89804878-89805128(-)$1	250	122	129	13.4218
GGAGCUG	chr16:67862158-67862395(-)$1	237	1	8	17.6406
GGAGCGG	chr1:1229393-1229655(-)$1	262	112	119	13.6562
GGAGCAG	chr17:40268956-40269162(-)$1	206	172	179	13.9687
GGAGCUG	chr20:60884671-60884924(-)$1	253	180	187	17.6406
GGAGCUG	chr15:75649040-75649351(-)$1	311	243	250	17.6406
GGAGUUG	chr20:62324127-62324444(+)$1	317	92	99	13.1093
GGAGCUG	chr19:36290872-36291131(-)$1	259	128	135	17.6406
GCAGCUG	chr8:145693814-145694068(+)$1	254	100	107	14.3593
GCAGCUG	chr2:42284633-42284888(+)$1	255	113	120	14.3593
GGAGCUG	chr17:38061051-38061318(-)$1	267	217	224	17.6406
GAAGCUG	chr16:89809199-89809445(-)$1	246	213	220	14.1250
GAAGCUG	chr9:117071584-117071796(+)$1	212	126	133	14.1250
GGGGCUG	chr19:18545757-18546028(-)$1	271	24	31	13.9687
GGACCUG	chr16:89804983-89805206(-)$1	223	69	76	13.4218
GGGGCUG	chr20:410932-411190(+)$1	258	80	87	13.9687
GGGGCUG	chr17:7128027-7128260(+)$1	233	185	192	13.9687
GAAGCUG	chr3:184106583-184106810(+)$1	227	30	37	14.1250
GGACCUG	chr20:62321549-62321775(+)$1	226	207	214	13.4218
GCAGCUG	chr3:184106676-184106883(+)$1	207	130	137	14.3593
GCAGCUG	chr5:179043025-179043236(-)$1	211	51	58	14.3593
GGAGCAG	chr19:36113677-36113921(+)$1	244	26	33	13.9687
GGGGCUG	chr14:24108409-24108639(+)$1	230	86	93	13.9687
GGAGCGG	chr1:1229455-1229679(-)$1	224	136	143	13.6562
ggagcgg	chr14:23528307-23528596(-)$1	289	98	105	13.6562
GCAGCUG	chr19:42410756-42411011(+)$1	255	6	13	14.3593
GGGGCUG	chr21:46923848-46924068(+)$1	220	6	13	13.9687
GGAGGUG	chrX:153277014-153277288(-)$1	274	108	115	13.1093
GGAGCUG	chr10:101605281-101605504(+)$1	223	120	127	17.6406
GAAGCUG	chrX:70787746-70788003(+)$1	257	196	203	14.1250
GGAGCUG	chr9:117068863-117069066(+)$1	203	147	154	17.6406
GGAGCUG	chr16:2580807-2581062(+)$1	255	148	155	17.6406
GAAGCUG	chr12:6666419-6666695(-)$1	276	41	48	14.1250
GGAGCUG	chr17:46058556-46058774(+)$1	218	128	135	17.6406
GGCGCUG	chr3:184099423-184099651(+)$1	228	87	94	13.6562
GGAGCUG	chr3:184101288-184101531(+)$1	243	157	164	17.6406
GGAGCUG	chr3:132277809-132278028(-)$1	219	171	178	17.6406
GGAGCUG	chr8:144566830-144567145(-)$1	315	86	93	17.6406
GGGGCUG	chr16:28915286-28915624(+)$1	338	42	49	13.9687
GGAGCAG	chr14:24736974-24737252(-)$1	278	36	43	13.9687
GGGGCUG	chr9:117068707-117068948(+)$1	241	18	25	13.9687
GGAGCUG	chr16:89816167-89816410(-)$1	243	117	124	17.6406
GGAGCUG	chr20:60884728-60884978(-)$1	250	234	241	17.6406

#otherMatches

#Struct PSSM
hhhhh]b	chr19:15490795-15491144(-)$1	349	133	140	13.6562
ooobbgg	chr1:22155970-22156195(-)$1	225	34	41	13.8125
EEEEKKG	chr17:78092473-78092705(+)$1	232	17	24	17.6406
eeccc[e	chr17:40269676-40269894(-)$1	218	138	145	17.6406
dddd[cc	chr3:49722411-49722622(-)$1	211	136	143	13.9687
cccpppp	chr3:49053078-49053429(+)$1	351	185	192	17.6406
EEEE::f	chr20:57288897-57289163(+)$1	266	164	171	13.4218
IIIIIII	chr2:232673155-232673413(+)$1	258	88	95	13.4218
cccHHHH	chr14:24029046-24029281(-)$1	235	47	54	14.3593
GGGffff	chr10:101606645-101606874(+)$1	229	155	162	17.6406
::hhhhh	chr22:40805482-40805752(+)$1	270	82	89	17.6406
dddd[cc	chr3:49722387-49722611(-)$1	224	125	132	13.9687
DDDD::E	chr12:53701199-53701600(-)$1	401	1	8	13.1093
fff[ccc	chr15:75650948-75651198(-)$1	250	183	190	13.1093
dd[a!!b	chr3:156865850-156866133(-)$1	283	96	103	13.6562
b]ggggg	chr19:42411244-42411553(+)$1	309	112	119	17.6406
eeedddd	chr17:80399946-80400197(+)$1	251	136	143	17.6406
dddd:ee	chr20:60885007-60885233(-)$1	226	117	124	13.9687
ff:CCCJ	chr17:73823928-73824196(-)$1	268	42	49	14.3593
cccccc]	chr7:73010108-73010350(-)$1	242	137	144	14.3593
{A{BBee	chr16:31201531-31201804(+)$1	273	31	38	13.9687
fff[ccc	chr16:89804878-89805128(-)$1	250	122	129	13.4218
CC{GGGG	chr16:67862158-67862395(-)$1	237	1	8	17.6406
qqqdddd	chr1:1229393-1229655(-)$1	262	112	119	13.6562
EEEEE:b	chr17:40268956-40269162(-)$1	206	172	179	13.9687
iibb)))	chr20:60884671-60884924(-)$1	253	180	187	17.6406
ggggggg	chr15:75649040-75649351(-)$1	311	243	250	17.6406
bbeeeee	chr20:62324127-62324444(+)$1	317	92	99	13.1093
c[ggggg	chr19:36290872-36291131(-)$1	259	128	135	17.6406
ccc[amm	chr8:145693814-145694068(+)$1	254	100	107	14.3593
BEEEEEG	chr2:42284633-42284888(+)$1	255	113	120	14.3593
cccDDDD	chr17:38061051-38061318(-)$1	267	217	224	17.6406
:::bboo	chr16:89809199-89809445(-)$1	246	213	220	14.1250
:::GGGG	chr9:117071584-117071796(+)$1	212	126	133	14.1250
A{FFFFF	chr19:18545757-18546028(-)$1	271	24	31	13.9687
eeennnn	chr16:89804983-89805206(-)$1	223	69	76	13.4218
=======	chr20:410932-411190(+)$1	258	80	87	13.9687
DDDDYYC	chr17:7128027-7128260(+)$1	233	185	192	13.9687
:::EEEE	chr3:184106583-184106810(+)$1	227	30	37	14.1250
ddddooo	chr20:62321549-62321775(+)$1	226	207	214	13.4218
dddd!!f	chr3:184106676-184106883(+)$1	207	130	137	14.3593
nnndddd	chr5:179043025-179043236(-)$1	211	51	58	14.3593
tttteee	chr19:36113677-36113921(+)$1	244	26	33	13.9687
rrrrccc	chr14:24108409-24108639(+)$1	230	86	93	13.9687
qqqdddd	chr1:1229455-1229679(-)$1	224	136	143	13.6562
::::ccc	chr14:23528307-23528596(-)$1	289	98	105	13.6562
::::GGG	chr19:42410756-42411011(+)$1	255	6	13	14.3593
GGGGGGc	chr21:46923848-46924068(+)$1	220	6	13	13.9687
b[cccmm	chrX:153277014-153277288(-)$1	274	108	115	13.1093
FFFFFFc	chr10:101605281-101605504(+)$1	223	120	127	17.6406
c]hhhhh	chrX:70787746-70788003(+)$1	257	196	203	14.1250
======E	chr9:117068863-117069066(+)$1	203	147	154	17.6406
!a[bboo	chr16:2580807-2581062(+)$1	255	148	155	17.6406
cc[cccm	chr12:6666419-6666695(-)$1	276	41	48	14.1250
uuuubb]	chr17:46058556-46058774(+)$1	218	128	135	17.6406
ccc[ccc	chr3:184099423-184099651(+)$1	228	87	94	13.6562
ffffffb	chr3:184101288-184101531(+)$1	243	157	164	17.6406
6eeeee]	chr3:132277809-132278028(-)$1	219	171	178	17.6406
ddd[a!!	chr8:144566830-144567145(-)$1	315	86	93	17.6406
GGGGKKD	chr16:28915286-28915624(+)$1	338	42	49	13.9687
cc[dddd	chr14:24736974-24737252(-)$1	278	36	43	13.9687
eee[ccc	chr9:117068707-117068948(+)$1	241	18	25	13.9687
777bb]d	chr16:89816167-89816410(-)$1	243	117	124	17.6406
JJJJJJJ	chr20:60884728-60884978(-)$1	250	234	241	17.6406

#DB
))))).)	chr19:15490795-15491144(-)$1	1	133	140	13.6562
...))((	chr1:22155970-22156195(-)$1	1	34	41	13.8125
((((..(	chr17:78092473-78092705(+)$1	1	17	24	17.6406
(((((.(	chr17:40269676-40269894(-)$1	1	138	145	17.6406
((((.((	chr3:49722411-49722622(-)$1	1	136	143	13.9687
(((....	chr3:49053078-49053429(+)$1	1	185	192	17.6406
))))..(	chr20:57288897-57289163(+)$1	1	164	171	13.4218
(((((((	chr2:232673155-232673413(+)$1	1	88	95	13.4218
)))((((	chr14:24029046-24029281(-)$1	1	47	54	14.3593
)))((((	chr10:101606645-101606874(+)$1	1	155	162	17.6406
..(((((	chr22:40805482-40805752(+)$1	1	82	89	17.6406
((((.((	chr3:49722387-49722611(-)$1	1	125	132	13.9687
((((..(	chr12:53701199-53701600(-)$1	1	1	8	13.1093
(((.(((	chr15:75650948-75651198(-)$1	1	183	190	13.1093
((.(..(	chr3:156865850-156866133(-)$1	1	96	103	13.6562
).)))))	chr19:42411244-42411553(+)$1	1	112	119	17.6406
)))))))	chr17:80399946-80400197(+)$1	1	136	143	17.6406
)))).((	chr20:60885007-60885233(-)$1	1	117	124	13.9687
)).((((	chr17:73823928-73824196(-)$1	1	42	49	14.3593
)))))).	chr7:73010108-73010350(-)$1	1	137	144	14.3593
.(.((((	chr16:31201531-31201804(+)$1	1	31	38	13.9687
(((.(((	chr16:89804878-89805128(-)$1	1	122	129	13.4218
((.((((	chr16:67862158-67862395(-)$1	1	1	8	17.6406
...))))	chr1:1229393-1229655(-)$1	1	112	119	13.6562
))))).(	chr17:40268956-40269162(-)$1	1	172	179	13.9687
((((...	chr20:60884671-60884924(-)$1	1	180	187	17.6406
(((((((	chr15:75649040-75649351(-)$1	1	243	250	17.6406
(((((((	chr20:62324127-62324444(+)$1	1	92	99	13.1093
(.(((((	chr19:36290872-36291131(-)$1	1	128	135	17.6406
(((.(..	chr8:145693814-145694068(+)$1	1	100	107	14.3593
(((((((	chr2:42284633-42284888(+)$1	1	113	120	14.3593
)))))))	chr17:38061051-38061318(-)$1	1	217	224	17.6406
...((..	chr16:89809199-89809445(-)$1	1	213	220	14.1250
...))))	chr9:117071584-117071796(+)$1	1	126	133	14.1250
(.(((((	chr19:18545757-18546028(-)$1	1	24	31	13.9687
(((....	chr16:89804983-89805206(-)$1	1	69	76	13.4218
)))))))	chr20:410932-411190(+)$1	1	80	87	13.9687
))))..)	chr17:7128027-7128260(+)$1	1	185	192	13.9687
...((((	chr3:184106583-184106810(+)$1	1	30	37	14.1250
((((...	chr20:62321549-62321775(+)$1	1	207	214	13.4218
((((..(	chr3:184106676-184106883(+)$1	1	130	137	14.3593
...))))	chr5:179043025-179043236(-)$1	1	51	58	14.3593
....)))	chr19:36113677-36113921(+)$1	1	26	33	13.9687
....)))	chr14:24108409-24108639(+)$1	1	86	93	13.9687
...))))	chr1:1229455-1229679(-)$1	1	136	143	13.6562
....(((	chr14:23528307-23528596(-)$1	1	98	105	13.6562
....(((	chr19:42410756-42411011(+)$1	1	6	13	14.3593
(((((((	chr21:46923848-46924068(+)$1	1	6	13	13.9687
(.(((..	chrX:153277014-153277288(-)$1	1	108	115	13.1093
(((((((	chr10:101605281-101605504(+)$1	1	120	127	17.6406
).)))))	chrX:70787746-70788003(+)$1	1	196	203	14.1250
)))))))	chr9:117068863-117069066(+)$1	1	147	154	17.6406
.(.((..	chr16:2580807-2581062(+)$1	1	148	155	17.6406
((.(((.	chr12:6666419-6666695(-)$1	1	41	48	14.1250
....)).	chr17:46058556-46058774(+)$1	1	128	135	17.6406
(((.(((	chr3:184099423-184099651(+)$1	1	87	94	13.6562
))))))(	chr3:184101288-184101531(+)$1	1	157	164	17.6406
.))))).	chr3:132277809-132278028(-)$1	1	171	178	17.6406
(((.(..	chr8:144566830-144567145(-)$1	1	86	93	17.6406
((((..(	chr16:28915286-28915624(+)$1	1	42	49	13.9687
((.((((	chr14:24736974-24737252(-)$1	1	36	43	13.9687
(((.(((	chr9:117068707-117068948(+)$1	1	18	25	13.9687
...)).)	chr16:89816167-89816410(-)$1	1	117	124	17.6406
)))))))	chr20:60884728-60884978(-)$1	1	234	241	17.6406

#PSSM
G : 0.98	g : 0.01	
G : 0.76	C : 0.12	A : 0.07	U : 0.01	g : 0.01	
A : 0.82	G : 0.10	C : 0.04	a : 0.01	
G : 0.90	C : 0.07	g : 0.01	
C : 0.92	U : 0.03	G : 0.03	c : 0.01	
U : 0.84	A : 0.10	G : 0.03	g : 0.01	
G : 0.98	g : 0.01	

#score	966.8125
#seq	64
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_transcript_m3_run1.nuc.txt

#NT
UGG	chr8:143359305-143359588(-)$1	283	20	23	8.9999
UGG	chr20:60928652-60928892(-)$1	240	4	7	8.9999
ugg	chr1:2003820-2004112(+)$1	292	70	73	8.9999
UGG	chr16:30535514-30535770(-)$1	256	12	15	8.9999
UGG	chr2:65497602-65497857(+)$1	255	16	19	8.9999
UGG	chr6:168226766-168227025(-)$1	259	17	20	8.9999
UGG	chr19:18538748-18539040(+)$1	292	52	55	8.9999
UGG	chr1:245026164-245026403(-)$1	239	108	111	8.9999
UGG	chr11:2154676-2154880(-)$1	204	19	22	8.9999
UGG	chr8:145910408-145910683(-)$1	275	8	11	8.9999
UGG	chr16:1125533-1125818(-)$1	285	15	18	8.9999
UGG	chr20:61590508-61590748(+)$1	240	9	12	8.9999
UGG	chr20:60935822-60936109(-)$1	287	21	24	8.9999
UGG	chr19:42758784-42759063(-)$1	279	44	47	8.9999
ugg	chr19:1158745-1159046(-)$1	301	2	5	8.9999
UGG	chr2:20871978-20872255(+)$1	277	8	11	8.9999
UGG	chr8:145027996-145028241(-)$1	245	5	8	8.9999
UGG	chr18:46466116-46466351(-)$1	235	40	43	8.9999
ugg	chr9:34368974-34369248(-)$1	274	40	43	8.9999
UGG	chr17:75415294-75415505(+)$1	211	32	35	8.9999
UGG	chr7:77167081-77167333(+)$1	252	20	23	8.9999
UGG	chr11:844108-844397(+)$1	289	26	29	8.9999
UGG	chr16:88523114-88523359(+)$1	245	32	35	8.9999
ugg	chr21:47565535-47565774(-)$1	239	20	23	8.9999
ugg	chr19:8313567-8313906(+)$1	339	0	3	8.9999
UGG	chr20:30823532-30823815(+)$1	283	0	3	8.9999
UGG	chr19:1143997-1144272(-)$1	275	3	6	8.9999
UGG	chr18:74119286-74119554(-)$1	268	1	4	8.9999
UGG	chr19:48642786-48643091(-)$1	305	4	7	8.9999
UGG	chr1:998960-999214(+)$1	254	140	143	8.9999
UGG	chr19:1408200-1408473(+)$1	273	21	24	8.9999
UGG	chr9:137257963-137258210(+)$1	247	0	3	8.9999
UGg	chr10:725268-725539(-)$1	271	9	12	8.9999
UGG	chr11:2159464-2159682(-)$1	218	32	35	8.9999
UGG	chr11:102102904-102103174(+)$1	270	7	10	8.9999
UGG	chr7:127671017-127671308(+)$1	291	6	9	8.9999
UGG	chr10:134587991-134588243(+)$1	252	16	19	8.9999
UGG	chr17:7383050-7383294(-)$1	244	84	87	8.9999
UGG	chr5:79436401-79436658(-)$1	257	93	96	8.9999
UGG	chr17:74378985-74379225(-)$1	240	22	25	8.9999
ugg	chr13:113627171-113627433(+)$1	262	0	3	8.9999
UGG	chr16:88542072-88542332(+)$1	260	2	5	8.9999
UGG	chr14:99986607-99986869(-)$1	262	4	7	8.9999
UGG	chr2:241900504-241900755(-)$1	251	68	71	8.9999
UGG	chr7:2164173-2164458(-)$1	285	16	19	8.9999
UGG	chr9:127253623-127253873(-)$1	250	60	63	8.9999
UGG	chr19:18530465-18530735(+)$1	270	97	100	8.9999
ugg	chr17:75480246-75480506(+)$1	260	2	5	8.9999
UGG	chr2:676842-677110(-)$1	268	15	18	8.9999
ugg	chr16:69165831-69166073(-)$1	242	27	30	8.9999
UGG	chr1:155947412-155947653(-)$1	241	56	59	8.9999
ugg	chr19:956051-956289(+)$1	238	79	82	8.9999
UGG	chrX:70472049-70472324(-)$1	275	8	11	8.9999
UGG	chr1:204050919-204051231(+)$1	312	47	50	8.9999
UGG	chr21:47560291-47560513(-)$1	222	30	33	8.9999
UGG	chr4:3367809-3368061(+)$1	252	9	12	8.9999
UGG	chr7:219612-219870(+)$1	258	10	13	8.9999
UGG	chr17:80189645-80189890(+)$1	245	106	109	8.9999
UGG	chr2:241560008-241560224(+)$1	216	27	30	8.9999
UGG	chr14:35873037-35873295(-)$1	258	5	8	8.9999
UGG	chr5:149676115-149676404(-)$1	289	23	26	8.9999
UGG	chr1:110163969-110164223(+)$1	254	29	32	8.9999
UGG	chr12:49332041-49332318(-)$1	277	14	17	8.9999
UGG	chr1:27929685-27929946(-)$1	261	2	5	8.9999
UGG	chr8:142426852-142427094(+)$1	242	12	15	8.9999
UGG	chrX:131506932-131507188(-)$1	256	2	5	8.9999
UGG	chr11:67888012-67888304(-)$1	292	15	18	8.9999
ugg	chr2:238506495-238506749(-)$1	254	5	8	8.9999
UGG	chr17:79962635-79962878(+)$1	243	36	39	8.9999
UGG	chr20:35203365-35203685(+)$1	320	63	66	8.9999
ugg	chr17:7078556-7078769(-)$1	213	60	63	8.9999
ugg	chr19:2926288-2926548(-)$1	260	1	4	8.9999
UGG	chr17:45772820-45773097(+)$1	277	5	8	8.9999
UGG	chr14:24776691-24777052(+)$1	361	31	34	8.9999
ugg	chr19:42788618-42788878(+)$1	260	78	81	8.9999
UGG	chr4:1801697-1801941(+)$1	244	8	11	8.9999
UGG	chr16:28835277-28835586(+)$1	309	12	15	8.9999
UGG	chr10:11653019-11653300(-)$1	281	18	21	8.9999
UGG	chr17:937716-937961(-)$1	245	15	18	8.9999
UGG	chr1:29652794-29653057(+)$1	263	63	66	8.9999
UGG	chr18:56006252-56006565(+)$1	313	107	110	8.9999
UGG	chr16:50631808-50632052(+)$1	244	17	20	8.9999
UGG	chr2:234762572-234762915(-)$1	343	8	11	8.9999
UGG	chr11:129765183-129765446(-)$1	263	98	101	8.9999
UGG	chr17:56167104-56167341(+)$1	237	30	33	8.9999
UGG	chr11:118915278-118915520(-)$1	242	35	38	8.9999
ugg	chr19:56632209-56632435(-)$1	226	2	5	8.9999
UGG	chr14:100043104-100043369(-)$1	265	8	11	8.9999
UGG	chr2:241564980-241565256(+)$1	276	52	55	8.9999
ugg	chr1:143172809-143173109(-)$1	300	10	13	8.9999
UGG	chr3:122786194-122786498(+)$1	304	6	9	8.9999
UGG	chr2:69613837-69614205(-)$1	368	7	10	8.9999
UGG	chr9:137267146-137267396(+)$1	250	14	17	8.9999
UGG	chr19:47634350-47634640(+)$1	290	56	59	8.9999
UGG	chr2:243031100-243031360(+)$1	260	6	9	8.9999

#otherMatches

#Struct PSSM
mdd	chr19:38876321-38876636(+)$1	315	19	22	8.9999
{A{	chr8:143359305-143359588(-)$1	283	20	23	8.9999
JJJ	chr20:60928652-60928892(-)$1	240	4	7	8.9999
ddd	chr1:2003820-2004112(+)$1	292	70	73	8.9999
ddd	chr16:30535514-30535770(-)$1	256	12	15	8.9999
::J	chr2:65497602-65497857(+)$1	255	16	19	8.9999
DKK	chr6:168226766-168227025(-)$1	259	17	20	8.9999
hhh	chr19:18538748-18539040(+)$1	292	52	55	8.9999
:::	chr1:245026164-245026403(-)$1	239	108	111	8.9999
[bb	chr11:2154676-2154880(-)$1	204	19	22	8.9999
ddd	chr8:145910408-145910683(-)$1	275	8	11	8.9999
fff	chr16:1125533-1125818(-)$1	285	15	18	8.9999
{DD	chr20:61590508-61590748(+)$1	240	9	12	8.9999
DDJ	chr20:60935822-60936109(-)$1	287	21	24	8.9999
eee	chr19:42758784-42759063(-)$1	279	44	47	8.9999
ggg	chr19:1158745-1159046(-)$1	301	2	5	8.9999
FFF	chr2:20871978-20872255(+)$1	277	8	11	8.9999
ggt	chr8:145027996-145028241(-)$1	245	5	8	8.9999
9ff	chr18:46466116-46466351(-)$1	235	40	43	8.9999
eee	chr9:34368974-34369248(-)$1	274	40	43	8.9999
!ff	chr17:75415294-75415505(+)$1	211	32	35	8.9999
ddd	chr7:77167081-77167333(+)$1	252	20	23	8.9999
:gg	chr11:844108-844397(+)$1	289	26	29	8.9999
[cc	chr16:88523114-88523359(+)$1	245	32	35	8.9999
c[e	chr21:47565535-47565774(-)$1	239	20	23	8.9999
:::	chr19:8313567-8313906(+)$1	339	0	3	8.9999
:EE	chr20:30823532-30823815(+)$1	283	0	3	8.9999
c[e	chr19:1143997-1144272(-)$1	275	3	6	8.9999
EEE	chr18:74119286-74119554(-)$1	268	1	4	8.9999
b!!	chr19:48642786-48643091(-)$1	305	4	7	8.9999
!cc	chr1:998960-999214(+)$1	254	140	143	8.9999
ddd	chr19:1408200-1408473(+)$1	273	21	24	8.9999
HHH	chr9:137257963-137258210(+)$1	247	0	3	8.9999
a$$	chr10:725268-725539(-)$1	271	9	12	8.9999
GGG	chr11:2159464-2159682(-)$1	218	32	35	8.9999
[bb	chr11:102102904-102103174(+)$1	270	7	10	8.9999
GGG	chr7:127671017-127671308(+)$1	291	6	9	8.9999
[dd	chr10:134587991-134588243(+)$1	252	16	19	8.9999
ddd	chr17:7383050-7383294(-)$1	244	84	87	8.9999
FFF	chr5:79436401-79436658(-)$1	257	93	96	8.9999
$$d	chr17:74378985-74379225(-)$1	240	22	25	8.9999
CCC	chr13:113627171-113627433(+)$1	262	0	3	8.9999
:dd	chr16:88542072-88542332(+)$1	260	2	5	8.9999
:::	chr14:99986607-99986869(-)$1	262	4	7	8.9999
bdd	chr2:241900504-241900755(-)$1	251	68	71	8.9999
iii	chr7:2164173-2164458(-)$1	285	16	19	8.9999
mmm	chr9:127253623-127253873(-)$1	250	60	63	8.9999
ggg	chr19:18530465-18530735(+)$1	270	97	100	8.9999
:::	chr17:75480246-75480506(+)$1	260	2	5	8.9999
ccc	chr2:676842-677110(-)$1	268	15	18	8.9999
RRR	chr16:69165831-69166073(-)$1	242	27	30	8.9999
ddd	chr1:155947412-155947653(-)$1	241	56	59	8.9999
4ee	chr19:956051-956289(+)$1	238	79	82	8.9999
DDD	chrX:70472049-70472324(-)$1	275	8	11	8.9999
d!!	chr1:204050919-204051231(+)$1	312	47	50	8.9999
b##	chr21:47560291-47560513(-)$1	222	30	33	8.9999
EEE	chr4:3367809-3368061(+)$1	252	9	12	8.9999
dnn	chr7:219612-219870(+)$1	258	10	13	8.9999
ddd	chr17:80189645-80189890(+)$1	245	106	109	8.9999
!bb	chr2:241560008-241560224(+)$1	216	27	30	8.9999
:DD	chr14:35873037-35873295(-)$1	258	5	8	8.9999
III	chr5:149676115-149676404(-)$1	289	23	26	8.9999
EE{	chr1:110163969-110164223(+)$1	254	29	32	8.9999
:::	chr12:49332041-49332318(-)$1	277	14	17	8.9999
:ee	chr1:27929685-27929946(-)$1	261	2	5	8.9999
mmm	chr8:142426852-142427094(+)$1	242	12	15	8.9999
fff	chrX:131506932-131507188(-)$1	256	2	5	8.9999
eee	chr11:67888012-67888304(-)$1	292	15	18	8.9999
DMM	chr2:238506495-238506749(-)$1	254	5	8	8.9999
===	chr17:79962635-79962878(+)$1	243	36	39	8.9999
GGG	chr20:35203365-35203685(+)$1	320	63	66	8.9999
:::	chr17:7078556-7078769(-)$1	213	60	63	8.9999
:::	chr19:2926288-2926548(-)$1	260	1	4	8.9999
:::	chr17:45772820-45773097(+)$1	277	5	8	8.9999
d%%	chr14:24776691-24777052(+)$1	361	31	34	8.9999
mdd	chr19:42788618-42788878(+)$1	260	78	81	8.9999
FFF	chr4:1801697-1801941(+)$1	244	8	11	8.9999
:JJ	chr16:28835277-28835586(+)$1	309	12	15	8.9999
mmm	chr10:11653019-11653300(-)$1	281	18	21	8.9999
ddd	chr17:937716-937961(-)$1	245	15	18	8.9999
:gg	chr1:29652794-29653057(+)$1	263	63	66	8.9999
555	chr18:56006252-56006565(+)$1	313	107	110	8.9999
GKK	chr16:50631808-50632052(+)$1	244	17	20	8.9999
LCC	chr2:234762572-234762915(-)$1	343	8	11	8.9999
ppp	chr11:129765183-129765446(-)$1	263	98	101	8.9999
JJ:	chr17:56167104-56167341(+)$1	237	30	33	8.9999
ggg	chr11:118915278-118915520(-)$1	242	35	38	8.9999
:::	chr19:56632209-56632435(-)$1	226	2	5	8.9999
{DD	chr14:100043104-100043369(-)$1	265	8	11	8.9999
bb]	chr2:241564980-241565256(+)$1	276	52	55	8.9999
:::	chr1:143172809-143173109(-)$1	300	10	13	8.9999
===	chr3:122786194-122786498(+)$1	304	6	9	8.9999
fff	chr2:69613837-69614205(-)$1	368	7	10	8.9999
ggg	chr9:137267146-137267396(+)$1	250	14	17	8.9999
ELL	chr19:47634350-47634640(+)$1	290	56	59	8.9999
c[a	chr2:243031100-243031360(+)$1	260	6	9	8.9999

#DB
.))	chr19:38876321-38876636(+)$1	1	19	22	8.9999
.(.	chr8:143359305-143359588(-)$1	1	20	23	8.9999
(((	chr20:60928652-60928892(-)$1	1	4	7	8.9999
)))	chr1:2003820-2004112(+)$1	1	70	73	8.9999
(((	chr16:30535514-30535770(-)$1	1	12	15	8.9999
..(	chr2:65497602-65497857(+)$1	1	16	19	8.9999
(..	chr6:168226766-168227025(-)$1	1	17	20	8.9999
)))	chr19:18538748-18539040(+)$1	1	52	55	8.9999
...	chr1:245026164-245026403(-)$1	1	108	111	8.9999
.((	chr11:2154676-2154880(-)$1	1	19	22	8.9999
(((	chr8:145910408-145910683(-)$1	1	8	11	8.9999
(((	chr16:1125533-1125818(-)$1	1	15	18	8.9999
.((	chr20:61590508-61590748(+)$1	1	9	12	8.9999
(((	chr20:60935822-60936109(-)$1	1	21	24	8.9999
)))	chr19:42758784-42759063(-)$1	1	44	47	8.9999
(((	chr19:1158745-1159046(-)$1	1	2	5	8.9999
(((	chr2:20871978-20872255(+)$1	1	8	11	8.9999
((.	chr8:145027996-145028241(-)$1	1	5	8	8.9999
.))	chr18:46466116-46466351(-)$1	1	40	43	8.9999
(((	chr9:34368974-34369248(-)$1	1	40	43	8.9999
.((	chr17:75415294-75415505(+)$1	1	32	35	8.9999
)))	chr7:77167081-77167333(+)$1	1	20	23	8.9999
.((	chr11:844108-844397(+)$1	1	26	29	8.9999
.((	chr16:88523114-88523359(+)$1	1	32	35	8.9999
(.(	chr21:47565535-47565774(-)$1	1	20	23	8.9999
...	chr19:8313567-8313906(+)$1	1	0	3	8.9999
.((	chr20:30823532-30823815(+)$1	1	0	3	8.9999
(.(	chr19:1143997-1144272(-)$1	1	3	6	8.9999
(((	chr18:74119286-74119554(-)$1	1	1	4	8.9999
(..	chr19:48642786-48643091(-)$1	1	4	7	8.9999
.((	chr1:998960-999214(+)$1	1	140	143	8.9999
)))	chr19:1408200-1408473(+)$1	1	21	24	8.9999
(((	chr9:137257963-137258210(+)$1	1	0	3	8.9999
(..	chr10:725268-725539(-)$1	1	9	12	8.9999
(((	chr11:2159464-2159682(-)$1	1	32	35	8.9999
.((	chr11:102102904-102103174(+)$1	1	7	10	8.9999
(((	chr7:127671017-127671308(+)$1	1	6	9	8.9999
.((	chr10:134587991-134588243(+)$1	1	16	19	8.9999
))(	chr17:7383050-7383294(-)$1	1	84	87	8.9999
(((	chr5:79436401-79436658(-)$1	1	93	96	8.9999
..(	chr17:74378985-74379225(-)$1	1	22	25	8.9999
(((	chr13:113627171-113627433(+)$1	1	0	3	8.9999
.((	chr16:88542072-88542332(+)$1	1	2	5	8.9999
...	chr14:99986607-99986869(-)$1	1	4	7	8.9999
)((	chr2:241900504-241900755(-)$1	1	68	71	8.9999
(((	chr7:2164173-2164458(-)$1	1	16	19	8.9999
...	chr9:127253623-127253873(-)$1	1	60	63	8.9999
)))	chr19:18530465-18530735(+)$1	1	97	100	8.9999
...	chr17:75480246-75480506(+)$1	1	2	5	8.9999
(((	chr2:676842-677110(-)$1	1	15	18	8.9999
...	chr16:69165831-69166073(-)$1	1	27	30	8.9999
(((	chr1:155947412-155947653(-)$1	1	56	59	8.9999
.))	chr19:956051-956289(+)$1	1	79	82	8.9999
(((	chrX:70472049-70472324(-)$1	1	8	11	8.9999
(..	chr1:204050919-204051231(+)$1	1	47	50	8.9999
(..	chr21:47560291-47560513(-)$1	1	30	33	8.9999
(((	chr4:3367809-3368061(+)$1	1	9	12	8.9999
(..	chr7:219612-219870(+)$1	1	10	13	8.9999
(((	chr17:80189645-80189890(+)$1	1	106	109	8.9999
.((	chr2:241560008-241560224(+)$1	1	27	30	8.9999
.((	chr14:35873037-35873295(-)$1	1	5	8	8.9999
(((	chr5:149676115-149676404(-)$1	1	23	26	8.9999
((.	chr1:110163969-110164223(+)$1	1	29	32	8.9999
...	chr12:49332041-49332318(-)$1	1	14	17	8.9999
.((	chr1:27929685-27929946(-)$1	1	2	5	8.9999
...	chr8:142426852-142427094(+)$1	1	12	15	8.9999
(((	chrX:131506932-131507188(-)$1	1	2	5	8.9999
(((	chr11:67888012-67888304(-)$1	1	15	18	8.9999
(..	chr2:238506495-238506749(-)$1	1	5	8	8.9999
(((	chr17:79962635-79962878(+)$1	1	36	39	8.9999
(((	chr20:35203365-35203685(+)$1	1	63	66	8.9999
...	chr17:7078556-7078769(-)$1	1	60	63	8.9999
...	chr19:2926288-2926548(-)$1	1	1	4	8.9999
...	chr17:45772820-45773097(+)$1	1	5	8	8.9999
(..	chr14:24776691-24777052(+)$1	1	31	34	8.9999
.))	chr19:42788618-42788878(+)$1	1	78	81	8.9999
(((	chr4:1801697-1801941(+)$1	1	8	11	8.9999
.((	chr16:28835277-28835586(+)$1	1	12	15	8.9999
...	chr10:11653019-11653300(-)$1	1	18	21	8.9999
(((	chr17:937716-937961(-)$1	1	15	18	8.9999
.((	chr1:29652794-29653057(+)$1	1	63	66	8.9999
...	chr18:56006252-56006565(+)$1	1	107	110	8.9999
(..	chr16:50631808-50632052(+)$1	1	17	20	8.9999
.((	chr2:234762572-234762915(-)$1	1	8	11	8.9999
...	chr11:129765183-129765446(-)$1	1	98	101	8.9999
((.	chr17:56167104-56167341(+)$1	1	30	33	8.9999
(((	chr11:118915278-118915520(-)$1	1	35	38	8.9999
...	chr19:56632209-56632435(-)$1	1	2	5	8.9999
.((	chr14:100043104-100043369(-)$1	1	8	11	8.9999
)).	chr2:241564980-241565256(+)$1	1	52	55	8.9999
...	chr1:143172809-143173109(-)$1	1	10	13	8.9999
(((	chr3:122786194-122786498(+)$1	1	6	9	8.9999
(((	chr2:69613837-69614205(-)$1	1	7	10	8.9999
(((	chr9:137267146-137267396(+)$1	1	14	17	8.9999
(..	chr19:47634350-47634640(+)$1	1	56	59	8.9999
(.(	chr2:243031100-243031360(+)$1	1	6	9	8.9999

#PSSM
U : 0.84	u : 0.15	
G : 0.83	g : 0.16	
G : 0.82	g : 0.17	

#score	863.9999999999999
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_transcript_m3_run1.nuc.txt

#NT
AGGUG	chr10:126795891-126796133(-)$1	242	108	113	15.0000
AGGUG	chr19:34881110-34881367(+)$1	257	60	65	15.0000
AGGUG	chr2:236504111-236504397(+)$1	286	73	78	15.0000
AGGUG	chr17:17731124-17731384(-)$1	260	88	93	15.0000
AGGUG	chr19:58769834-58770196(+)$1	362	28	33	15.0000
AGGUG	chr11:66391277-66391538(+)$1	261	3	8	15.0000
AGGUG	chr2:132043765-132044014(+)$1	249	15	20	15.0000
AGGUG	chr1:246800139-246800455(+)$1	316	218	223	15.0000
aggug	chr2:132038004-132038258(+)$1	254	19	24	15.0000
AGGUG	chr8:145681093-145681383(-)$1	290	231	236	15.0000
AGGUG	chr11:2712966-2713311(-)$1	345	58	63	15.0000
AGGUG	chr19:34873793-34874036(+)$1	243	50	55	15.0000
AGGUG	chr16:31198877-31199148(+)$1	271	60	65	15.0000
AGGUG	chr1:228278706-228278969(+)$1	263	7	12	15.0000
AGGUG	chr2:236437988-236438256(+)$1	268	135	140	15.0000
AGGUG	chr19:34882998-34883269(+)$1	271	217	222	15.0000
AGGUG	chr13:114246001-114246258(+)$1	257	76	81	15.0000
AGGUG	chr17:26960691-26960987(-)$1	296	133	138	15.0000
aggug	chr1:8845882-8846241(-)$1	359	167	172	15.0000
aggug	chr1:220379851-220380144(-)$1	293	3	8	15.0000
aggug	chr12:133260173-133260494(-)$1	321	206	211	15.0000
AGGUG	chr11:65192558-65192778(+)$1	220	152	157	15.0000
AGGUG	chr22:19840488-19840740(-)$1	252	31	36	15.0000
AGGUG	chr2:132045789-132046095(+)$1	306	24	29	15.0000
AGGUG	chr11:3064199-3064455(-)$1	256	119	124	15.0000
AGGUG	chr19:34876280-34876509(+)$1	229	167	172	15.0000
AGGUG	chr19:34882300-34882639(+)$1	339	246	251	15.0000
AGGUG	chr22:49961766-49962088(-)$1	322	160	165	15.0000
Aggug	chr22:49937767-49938059(-)$1	292	229	234	15.0000
aggug	chr12:133319061-133319403(-)$1	342	171	176	15.0000
AGGUG	chr22:20095436-20095701(+)$1	265	8	13	15.0000
AGGUG	chr19:34875261-34875514(+)$1	253	108	113	15.0000
AGGUG	chr22:50014502-50014763(-)$1	261	83	88	15.0000
AGGUG	chr17:56408943-56409185(-)$1	242	212	217	15.0000
AGGUG	chr5:34189401-34189640(-)$1	239	168	173	15.0000
AGGUG	chr22:19841482-19841779(-)$1	297	253	258	15.0000
aggug	chr16:2809950-2810274(+)$1	324	45	50	15.0000
AGGUG	chr22:23556406-23556659(+)$1	253	244	249	15.0000
AGGUG	chr19:34877488-34877734(+)$1	246	20	25	15.0000
aggug	chr4:770470-770790(-)$1	320	101	106	15.0000
AGGUG	chr3:13376541-13376811(-)$1	270	45	50	15.0000
aggug	chr17:73889504-73889744(-)$1	240	91	96	15.0000
AGGUG	chr17:73890424-73890715(-)$1	291	264	269	15.0000
AGGUG	chr4:1238705-1238956(-)$1	251	8	13	15.0000
AGGUG	chr1:2324319-2324595(+)$1	276	126	131	15.0000
AGGUG	chr16:31198106-31198406(+)$1	300	154	159	15.0000
AGGUG	chr22:49960010-49960261(-)$1	251	243	248	15.0000
aggug	chr8:130586943-130587201(-)$1	258	30	35	15.0000
AGGUG	chr19:50168058-50168449(-)$1	391	294	299	15.0000
agGUG	chr1:54837909-54838196(-)$1	287	158	163	15.0000
aggug	chr5:176911278-176911534(-)$1	256	202	207	15.0000
AGGUG	chr19:34882825-34883043(+)$1	218	136	141	15.0000
AGGUG	chr8:91018776-91019031(+)$1	255	14	19	15.0000
AGGUG	chr22:49964179-49964449(-)$1	270	125	130	15.0000
AGGUG	chr22:48135073-48135313(+)$1	240	10	15	15.0000
AGGUG	chr19:34882773-34883025(+)$1	252	188	193	15.0000
AGGUG	chr5:34190991-34191204(-)$1	213	28	33	15.0000

#otherMatches

#Struct PSSM
:a[dd	chr1:155283137-155283370(+)$1	233	193	198	15.0000
[dddd	chr10:126795891-126796133(-)$1	242	108	113	15.0000
ccnnn	chr19:34881110-34881367(+)$1	257	60	65	15.0000
:CCCK	chr2:236504111-236504397(+)$1	286	73	78	15.0000
gg"""	chr17:17731124-17731384(-)$1	260	88	93	15.0000
]ccc:	chr19:58769834-58770196(+)$1	362	28	33	15.0000
ggggg	chr11:66391277-66391538(+)$1	261	3	8	15.0000
DDDdd	chr2:132043765-132044014(+)$1	249	15	20	15.0000
22fff	chr1:246800139-246800455(+)$1	316	218	223	15.0000
dddd[	chr2:132038004-132038258(+)$1	254	19	24	15.0000
mmmmf	chr8:145681093-145681383(-)$1	290	231	236	15.0000
qqqqe	chr11:2712966-2713311(-)$1	345	58	63	15.0000
ccc22	chr19:34873793-34874036(+)$1	243	50	55	15.0000
KKBB{	chr16:31198877-31199148(+)$1	271	60	65	15.0000
HHHH:	chr1:228278706-228278969(+)$1	263	7	12	15.0000
ffffm	chr2:236437988-236438256(+)$1	268	135	140	15.0000
h]a55	chr19:34882998-34883269(+)$1	271	217	222	15.0000
III}D	chr13:114246001-114246258(+)$1	257	76	81	15.0000
555a]	chr17:26960691-26960987(-)$1	296	133	138	15.0000
ppppp	chr1:8845882-8846241(-)$1	359	167	172	15.0000
::ccc	chr1:220379851-220380144(-)$1	293	3	8	15.0000
eeeel	chr12:133260173-133260494(-)$1	321	206	211	15.0000
llddd	chr11:65192558-65192778(+)$1	220	152	157	15.0000
::ccc	chr22:19840488-19840740(-)$1	252	31	36	15.0000
IIIII	chr2:132045789-132046095(+)$1	306	24	29	15.0000
>>>a]	chr11:3064199-3064455(-)$1	256	119	124	15.0000
mmmmd	chr19:34876280-34876509(+)$1	229	167	172	15.0000
nnna]	chr19:34882300-34882639(+)$1	339	246	251	15.0000
mmmee	chr22:49961766-49962088(-)$1	322	160	165	15.0000
JJJJJ	chr22:49937767-49938059(-)$1	292	229	234	15.0000
ECCC}	chr12:133319061-133319403(-)$1	342	171	176	15.0000
ff$$$	chr22:20095436-20095701(+)$1	265	8	13	15.0000
mmmmd	chr19:34875261-34875514(+)$1	253	108	113	15.0000
:gggg	chr22:50014502-50014763(-)$1	261	83	88	15.0000
EEEEY	chr17:56408943-56409185(-)$1	242	212	217	15.0000
22hhh	chr5:34189401-34189640(-)$1	239	168	173	15.0000
!!bb[	chr22:19841482-19841779(-)$1	297	253	258	15.0000
gggg]	chr16:2809950-2810274(+)$1	324	45	50	15.0000
dddd]	chr22:23556406-23556659(+)$1	253	244	249	15.0000
EE{EE	chr19:34877488-34877734(+)$1	246	20	25	15.0000
:::::	chr4:770470-770790(-)$1	320	101	106	15.0000
::hhh	chr3:13376541-13376811(-)$1	270	45	50	15.0000
2cccb	chr17:73889504-73889744(-)$1	240	91	96	15.0000
gggg]	chr17:73890424-73890715(-)$1	291	264	269	15.0000
:BB{F	chr4:1238705-1238956(-)$1	251	8	13	15.0000
ffccc	chr1:2324319-2324595(+)$1	276	126	131	15.0000
ppppp	chr16:31198106-31198406(+)$1	300	154	159	15.0000
JJJJJ	chr22:49960010-49960261(-)$1	251	243	248	15.0000
'''dd	chr8:130586943-130587201(-)$1	258	30	35	15.0000
GGG{G	chr19:50168058-50168449(-)$1	391	294	299	15.0000
dddqq	chr1:54837909-54838196(-)$1	287	158	163	15.0000
bb]a]	chr5:176911278-176911534(-)$1	256	202	207	15.0000
[eeee	chr19:34882825-34883043(+)$1	218	136	141	15.0000
fffff	chr8:91018776-91019031(+)$1	255	14	19	15.0000
!ccc#	chr22:49964179-49964449(-)$1	270	125	130	15.0000
{CCCL	chr22:48135073-48135313(+)$1	240	10	15	15.0000
[eeee	chr19:34882773-34883025(+)$1	252	188	193	15.0000
FFFBB	chr5:34190991-34191204(-)$1	213	28	33	15.0000

#DB
.(.((	chr1:155283137-155283370(+)$1	1	193	198	15.0000
.((((	chr10:126795891-126796133(-)$1	1	108	113	15.0000
((...	chr19:34881110-34881367(+)$1	1	60	65	15.0000
.(((.	chr2:236504111-236504397(+)$1	1	73	78	15.0000
((...	chr17:17731124-17731384(-)$1	1	88	93	15.0000
.))).	chr19:58769834-58770196(+)$1	1	28	33	15.0000
(((((	chr11:66391277-66391538(+)$1	1	3	8	15.0000
(((((	chr2:132043765-132044014(+)$1	1	15	20	15.0000
..)))	chr1:246800139-246800455(+)$1	1	218	223	15.0000
((((.	chr2:132038004-132038258(+)$1	1	19	24	15.0000
....)	chr8:145681093-145681383(-)$1	1	231	236	15.0000
....)	chr11:2712966-2713311(-)$1	1	58	63	15.0000
)))..	chr19:34873793-34874036(+)$1	1	50	55	15.0000
..((.	chr16:31198877-31199148(+)$1	1	60	65	15.0000
((((.	chr1:228278706-228278969(+)$1	1	7	12	15.0000
((((.	chr2:236437988-236438256(+)$1	1	135	140	15.0000
).)..	chr19:34882998-34883269(+)$1	1	217	222	15.0000
))).)	chr13:114246001-114246258(+)$1	1	76	81	15.0000
...).	chr17:26960691-26960987(-)$1	1	133	138	15.0000
.....	chr1:8845882-8846241(-)$1	1	167	172	15.0000
..(((	chr1:220379851-220380144(-)$1	1	3	8	15.0000
((((.	chr12:133260173-133260494(-)$1	1	206	211	15.0000
..)))	chr11:65192558-65192778(+)$1	1	152	157	15.0000
..(((	chr22:19840488-19840740(-)$1	1	31	36	15.0000
(((((	chr2:132045789-132046095(+)$1	1	24	29	15.0000
...).	chr11:3064199-3064455(-)$1	1	119	124	15.0000
....)	chr19:34876280-34876509(+)$1	1	167	172	15.0000
...).	chr19:34882300-34882639(+)$1	1	246	251	15.0000
...))	chr22:49961766-49962088(-)$1	1	160	165	15.0000
)))))	chr22:49937767-49938059(-)$1	1	229	234	15.0000
)))).	chr12:133319061-133319403(-)$1	1	171	176	15.0000
((...	chr22:20095436-20095701(+)$1	1	8	13	15.0000
....)	chr19:34875261-34875514(+)$1	1	108	113	15.0000
.((((	chr22:50014502-50014763(-)$1	1	83	88	15.0000
)))).	chr17:56408943-56409185(-)$1	1	212	217	15.0000
..)))	chr5:34189401-34189640(-)$1	1	168	173	15.0000
..((.	chr22:19841482-19841779(-)$1	1	253	258	15.0000
)))).	chr16:2809950-2810274(+)$1	1	45	50	15.0000
)))).	chr22:23556406-23556659(+)$1	1	244	249	15.0000
((.((	chr19:34877488-34877734(+)$1	1	20	25	15.0000
.....	chr4:770470-770790(-)$1	1	101	106	15.0000
..(((	chr3:13376541-13376811(-)$1	1	45	50	15.0000
.))))	chr17:73889504-73889744(-)$1	1	91	96	15.0000
)))).	chr17:73890424-73890715(-)$1	1	264	269	15.0000
.((.(	chr4:1238705-1238956(-)$1	1	8	13	15.0000
(((((	chr1:2324319-2324595(+)$1	1	126	131	15.0000
.....	chr16:31198106-31198406(+)$1	1	154	159	15.0000
)))))	chr22:49960010-49960261(-)$1	1	243	248	15.0000
...((	chr8:130586943-130587201(-)$1	1	30	35	15.0000
(((.(	chr19:50168058-50168449(-)$1	1	294	299	15.0000
(((..	chr1:54837909-54838196(-)$1	1	158	163	15.0000
)).).	chr5:176911278-176911534(-)$1	1	202	207	15.0000
.((((	chr19:34882825-34883043(+)$1	1	136	141	15.0000
)))))	chr8:91018776-91019031(+)$1	1	14	19	15.0000
.(((.	chr22:49964179-49964449(-)$1	1	125	130	15.0000
.(((.	chr22:48135073-48135313(+)$1	1	10	15	15.0000
.((((	chr19:34882773-34883025(+)$1	1	188	193	15.0000
(((((	chr5:34190991-34191204(-)$1	1	28	33	15.0000

#PSSM
A : 0.81	a : 0.18	
G : 0.79	g : 0.20	
G : 0.81	g : 0.18	
U : 0.81	u : 0.18	
G : 0.81	g : 0.18	

#score	870.0000000000001
#seq	58
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_CDS_m1_run1.nuc.txt

#NT
UGGCCCUGAGUG	chr2:132249348-132249550(-)$1	202	182	194	22.6666
UUGCACUGAAUG	chr6:74227979-74228183(-)$1	204	167	179	19.8888
UGGCCGUGUCCG	chr9:19378773-19378978(-)$1	205	133	145	19.8888
UGGCCGUGUCCG	chr9:19378708-19378945(-)$1	237	100	112	19.8888
UUGCACUGAAUG	chr6:74227868-74228084(-)$1	216	68	80	19.8888
UGGCCGUGUCCG	chr9:19378745-19378959(-)$1	214	114	126	19.8888
UGGCCCUGAGUG	chr2:132249350-132249616(-)$1	266	248	260	22.6666
UGGCCCUGGCGG	chr2:130947941-130948155(+)$1	214	136	148	19.3333
UUGCACUGAAUG	chr6:74227884-74228088(-)$1	204	72	84	19.8888
UGGCCGUGUCCG	chr9:19378759-19378973(-)$1	214	128	140	19.8888
UGGCCCUGGCGG	chr2:132241678-132241891(-)$1	213	136	148	19.3333
UUGCACUGAAUG	chr6:74227985-74228200(-)$1	215	184	196	19.8888
UGGCCCUGAGUG	chr2:130940241-130940449(+)$1	208	187	199	22.6666
UUGCACUGAAUG	chr6:74227976-74228179(-)$1	203	163	175	19.8888
UGGCCGUGUCCG	chr9:19378781-19378998(-)$1	217	153	165	19.8888
UUGCACUGAAUG	chr6:74227857-74228068(-)$1	211	52	64	19.8888
UGGCCGUGUCCG	chr9:19378798-19379017(-)$1	219	172	184	19.8888

#otherMatches

#Struct PSSM
}BBBB}A}BB::	chr2:130940203-130940441(+)$1	238	225	237	22.6666
eeeeeooooooe	chr2:132249348-132249550(-)$1	202	182	194	22.6666
iiiiinnnnnii	chr6:74227979-74228183(-)$1	204	167	179	19.8888
BB~~~~DDDDYY	chr9:19378773-19378978(-)$1	205	133	145	19.8888
BB~~~~DDDDYY	chr9:19378708-19378945(-)$1	237	100	112	19.8888
hhhhhnnnnnhh	chr6:74227868-74228084(-)$1	216	68	80	19.8888
BB~~~~DDDDYY	chr9:19378745-19378959(-)$1	214	114	126	19.8888
EEE:ddddoooo	chr2:132249350-132249616(-)$1	266	248	260	22.6666
"""bbeeeeecc	chr2:130947941-130948155(+)$1	214	136	148	19.3333
fffff:BB{FFF	chr6:74227884-74228088(-)$1	204	72	84	19.8888
BB~~~~DDDDYY	chr9:19378759-19378973(-)$1	214	128	140	19.8888
qqqdddd]a]bb	chr2:132241678-132241891(-)$1	213	136	148	19.3333
hhhhhnnnnnhh	chr6:74227985-74228200(-)$1	215	184	196	19.8888
eeeeeooooooe	chr2:130940241-130940449(+)$1	208	187	199	22.6666
iiiiinnnnnii	chr6:74227976-74228179(-)$1	203	163	175	19.8888
BB~~~~DDDDYY	chr9:19378781-19378998(-)$1	217	153	165	19.8888
hhhhhnnnnnhh	chr6:74227857-74228068(-)$1	211	52	64	19.8888
BB~~~~DDDDYY	chr9:19378798-19379017(-)$1	219	172	184	19.8888

#DB
.)))).).))..	chr2:130940203-130940441(+)$1	1	225	237	22.6666
(((((......)	chr2:132249348-132249550(-)$1	1	182	194	22.6666
(((((.....))	chr6:74227979-74228183(-)$1	1	167	179	19.8888
))....))))..	chr9:19378773-19378978(-)$1	1	133	145	19.8888
))....))))..	chr9:19378708-19378945(-)$1	1	100	112	19.8888
(((((.....))	chr6:74227868-74228084(-)$1	1	68	80	19.8888
))....))))..	chr9:19378745-19378959(-)$1	1	114	126	19.8888
))).((((....	chr2:132249350-132249616(-)$1	1	248	260	22.6666
...(((((((((	chr2:130947941-130948155(+)$1	1	136	148	19.3333
))))).((.(((	chr6:74227884-74228088(-)$1	1	72	84	19.8888
))....))))..	chr9:19378759-19378973(-)$1	1	128	140	19.8888
...)))).).))	chr2:132241678-132241891(-)$1	1	136	148	19.3333
(((((.....))	chr6:74227985-74228200(-)$1	1	184	196	19.8888
(((((......)	chr2:130940241-130940449(+)$1	1	187	199	22.6666
(((((.....))	chr6:74227976-74228179(-)$1	1	163	175	19.8888
))....))))..	chr9:19378781-19378998(-)$1	1	153	165	19.8888
(((((.....))	chr6:74227857-74228068(-)$1	1	52	64	19.8888
))....))))..	chr9:19378798-19379017(-)$1	1	172	184	19.8888

#PSSM
U : 1.00	
G : 0.66	U : 0.33	
G : 1.00	
C : 1.00	
C : 0.66	A : 0.33	
C : 0.66	G : 0.33	
U : 1.00	
G : 1.00	
A : 0.55	U : 0.33	G : 0.11	
C : 0.44	A : 0.33	G : 0.22	
U : 0.55	C : 0.33	G : 0.11	
G : 1.00	

#score	368.00000000000017
#seq	18
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_CDS_m1_run1.nuc.txt

#NT
GCUUUCUUUCUCUCUCCGCUUCCCCCU	chr2:130918726-130918985(-)$1	259	20	47	21.9090
ucucucuuucucuuucccucuuccuuu	chr9:114128801-114129054(-)$1	253	29	56	33.0000
CCUUUUGCUCUCUGUCUUUCUGCCAUU	chr2:74599961-74600266(-)$1	305	115	142	23.0909
ucuuuuuuucuuuauuuucuuuccuuu	chr2:99197899-99198177(+)$1	278	69	96	24.9090
ccucucucuuuuccccucucucccuuu	chr6:33179870-33180182(+)$1	312	163	190	28.0000
UCUUUCUUUUUUUUUUUCUUUCUCUGU	chr6:168355016-168355260(+)$1	244	85	112	28.1818
ucugucucucucucucucucucucucu	chr19:5238973-5239266(-)$1	293	63	90	38.1818
uccucuucuuccuccuccucuuccucu	chr16:2819014-2819299(+)$1	285	122	149	25.0909
ucuuucuuuacaucacucuuuuccuua	chr16:74339383-74339699(-)$1	316	90	117	22.6363
UCUUACGCUUUCCCUUUCUCAUUCUUC	chr1:180042806-180043125(+)$1	319	40	67	22.2727
ucuuccucuuccucuuccucuCCCCCU	chr17:7369626-7369951(-)$1	325	143	170	30.0909
CCUUUuucucuuucuccuccucuuuuu	chr1:154131417-154131687(-)$1	270	92	119	26.2727
UCCUUGUCUCCCUCUCCCUUUUUCUGU	chr20:35090849-35091084(+)$1	235	54	81	26.5454
ucucucuuucuuuaccucccucccugu	chr10:102283748-102284031(-)$1	283	45	72	25.4545
UCUGUCUGCUCCUCUCUGCCUCCCUUG	chr1:176137759-176138057(-)$1	298	182	209	21.3636
ucuguuucuaccuccccaucuccuuuu	chr11:101827393-101827693(+)$1	300	135	162	23.0909
uccucuucuuccuccuccucuuccucu	chr16:2819099-2819363(+)$1	264	37	64	25.0909
ccuuucuuuuucucucugcucaccucu	chr6:32083629-32083902(-)$1	273	48	75	19.6363
ucucucucucccucucucuuucucuuu	chrX:70468538-70468828(-)$1	290	121	148	35.2727
uucuccucuuuguuuuucucuuGCUUA	chr11:46686264-46686552(+)$1	288	106	133	21.0909
ucucucucucucuucuuuucuccaucu	chr3:133347461-133347770(-)$1	309	143	170	27.4545
ucuuucuuucuuucuuucuuucuuuuu	chr9:71849237-71849519(+)$1	282	55	82	31.4545
uccuccucccuccuuccuccucccuuc	chr2:70129274-70129609(+)$1	335	66	93	20.6363
GCUUCCucuuuuucuuucuucuccugu	chr5:112227542-112227835(-)$1	293	80	107	23.3636
ucuuugucucugucuuuaucucGCCUU	chr19:42839801-42840202(+)$1	401	158	185	28.4545
CCUUUCUCCUUCUUUCUCUCCUGCUUC	chr14:23777866-23778135(+)$1	269	116	143	24.0000
ucucucucucucucucucucucucucu	chr1:32045732-32046001(+)$1	269	32	59	38.7272
UUUUUUUCUUUCCCUCUCUCUGUCUUC	chr11:85671692-85671980(-)$1	288	122	149	28.7272
ucuuccccucucucugccucuuccucc	chr14:23993907-23994185(+)$1	278	114	141	29.4545
ccuugcugucucucucgcucucucuuc	chr12:120150389-120150672(-)$1	283	85	112	28.0909
ucuuuaucucuuucucugccucucucu	chr19:47230726-47231055(-)$1	329	150	177	31.0000
ucuucuucucuuccuccuucuccuuuc	chr22:40749181-40749471(+)$1	290	110	137	25.8181
uggauuccucucucucucucuccccuu	chr9:139917409-139917703(-)$1	294	135	162	24.4545
uuuuucuuucucuuucuuucuuucuuc	chr12:42623920-42624191(-)$1	271	74	101	29.2727
uccuccucuuccucugccucccccuuc	chr12:7045584-7045878(+)$1	294	16	43	25.5454
ucuuucucuucucgccccccucacuuu	chr9:13186284-13186541(-)$1	257	47	74	21.6363
UUAUUUUCUCUCUCUCUUCCUUUAUUC	chr8:62588756-62589014(-)$1	258	101	128	23.0000
ucuuuuucucuuucuuucucucucuAC	chr6:35447705-35447940(-)$1	235	12	39	34.5454
uucuuuucucucucauucucuccucuc	chr9:98236313-98236621(-)$1	308	160	187	23.5454
uacuucccucucucccucccucccucc	chr7:116608283-116608561(+)$1	278	16	43	24.9090
UCUUUUUCUGUCUCUCUUGCUCUCUUU	chrX:76849214-76849509(-)$1	295	115	142	33.0909
ucuaucccucuuuuuuccucuccuuug	chr11:101827160-101827546(+)$1	386	224	251	23.7272
uucuuuccucccuccuucccuuccuuc	chr4:1215494-1215783(-)$1	289	101	128	21.1818
ucuuucucucucucucucucucccuuu	chr10:114919512-114919785(+)$1	273	92	119	44.6363
UCUCUUUGACUCUUUGUCUCUCACUUC	chr6:33286466-33286762(-)$1	296	149	176	23.1818
UCUUCCUCCCUCUCUAUUUUUCUCCUC	chr3:48016819-48017116(-)$1	297	130	157	24.5454
ucuucuucuucuucuucuucuucuuuu	chr15:96880453-96880701(+)$1	248	58	85	25.0909
uuuuucuuccucugcuucuuucccuuu	chr1:10342203-10342486(+)$1	283	110	137	25.0000
UCCUUuucuuucuccucuuccuucuuu	chr16:15696298-15696592(-)$1	294	82	109	24.4545
ucuuuuucugccuguaucuguccaucu	chr17:7813566-7813859(+)$1	293	72	99	22.8181
CUUCUCUCUCUCUUUCUCUCUUCCCUU	chr16:30733712-30734019(+)$1	307	137	164	27.1818
ucuuccuccucuucuuccucuuccucu	chrX:21863303-21863595(+)$1	292	118	145	26.8181
UCUUGCCCUCUAUCUUUCUCUAGCUGU	chrX:151129623-151129885(-)$1	262	106	133	25.7272
ucucucucucuuucucucucucucuGU	chr19:39201878-39202132(+)$1	254	6	33	36.0909

#otherMatches

#Struct PSSM
:::::::::::::::ffffff!!ccc[	chr5:176917489-176917804(-)$1	315	182	209	26.5454
bbxxxxxxxxxxxxxxxbb::::::::	chr2:130918726-130918985(-)$1	259	20	47	21.9090
:::::::::::::::DDDD::::::::	chr9:114128801-114129054(-)$1	253	29	56	33.0000
gggggbb]bb]dddd]ggggggg::::	chr2:74599961-74600266(-)$1	305	115	142	23.0909
^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:99197899-99198177(+)$1	278	69	96	24.9090
c!!accc^^^^^^^^^^^^^^^^^^^^	chr6:33179870-33180182(+)$1	312	163	190	28.0000
^^^^^^^^^^^^^^^^^^^^^^^^^dd	chr6:168355016-168355260(+)$1	244	85	112	28.1818
:::::::::::::::::::::::::::	chr19:5238973-5239266(-)$1	293	63	90	38.1818
GGGGGGGZZZAYYFFFFFF::::::::	chr16:2819014-2819299(+)$1	285	122	149	25.0909
:::::::::::::::::::::::::::	chr16:74339383-74339699(-)$1	316	90	117	22.6363
ooooooccc0000000000a8888888	chr1:180042806-180043125(+)$1	319	40	67	22.2727
:::::::::::::::::::::::::ff	chr17:7369626-7369951(-)$1	325	143	170	30.0909
:::::::::::::::::::::::::::	chr1:154131417-154131687(-)$1	270	92	119	26.2727
D{AKKA{DDDD::::::::::::::::	chr20:35090849-35091084(+)$1	235	54	81	26.5454
WWWWWWWWWWWWWWWWWWWWWWWWWWH	chr10:102283748-102284031(-)$1	283	45	72	25.4545
]ccc:::bb"""bb"""cccooooooc	chr1:176137759-176138057(-)$1	298	182	209	21.3636
[ccceeeee"""ffffff^^^^^^^^^	chr11:101827393-101827693(+)$1	300	135	162	23.0909
E{DDDD{A{BBGGGGGGGCCC{CCC{C	chr16:2819099-2819363(+)$1	264	37	64	25.0909
HHHRRRRRRRRRCCC{BBLLLEEEEEE	chr6:32083629-32083902(-)$1	273	48	75	19.6363
BB:::::::::::::::::::::::::	chrX:70468538-70468828(-)$1	290	121	148	35.2727
:::::::bb!!bbrrrrrrrrrbb22b	chr11:46686264-46686552(+)$1	288	106	133	21.0909
^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:133347461-133347770(-)$1	309	143	170	27.4545
::::::::FFFFFF::ggggggg$$$$	chr9:71849237-71849519(+)$1	282	55	82	31.4545
:::::::::::::::::::::::::::	chr2:70129274-70129609(+)$1	335	66	93	20.6363
ee^^^^^^^^^^^^^^^^^^^^^^^ee	chr5:112227542-112227835(-)$1	293	80	107	23.3636
:::::::::::::::::::::::::::	chr19:42839801-42840202(+)$1	401	158	185	28.4545
f4444ffffff:FFFFFF}EEEEE::C	chr14:23777866-23778135(+)$1	269	116	143	24.0000
eeee:::::::::::::::::::::::	chr1:32045732-32046001(+)$1	269	32	59	38.7272
qqqqqqdddd:::::::::::::::::	chr11:85671692-85671980(-)$1	288	122	149	28.7272
::::::::::::::dddd[ccc[eeee	chr14:23993907-23994185(+)$1	278	114	141	29.4545
::::bbssssssssssbb:::::::::	chr12:120150389-120150672(-)$1	283	85	112	28.0909
zzzzzzzzzzzzzzzzzbb::::::::	chr19:47230726-47231055(-)$1	329	150	177	31.0000
:::::::::EEEEE{CCC{BB::::::	chr22:40749181-40749471(+)$1	290	110	137	25.8181
:CCCKKBBLLLCCCDDDD:::::::::	chr9:139917409-139917703(-)$1	294	135	162	24.4545
:::::::::::::::::::::::::::	chr12:42623920-42624191(-)$1	271	74	101	29.2727
:::::::::::::::::::::::::::	chr12:7045584-7045878(+)$1	294	16	43	25.5454
WWWWWWBBKKBB{DDDD::::::::::	chr9:13186284-13186541(-)$1	257	47	74	21.6363
++++++++++++bb####ccc[cccmm	chr8:62588756-62589014(-)$1	258	101	128	23.0000
::::::::GGGGGGGKKGGGGGGG{DD	chr6:35447705-35447940(-)$1	235	12	39	34.5454
:::::::::::::::::::::::::::	chr9:98236313-98236621(-)$1	308	160	187	23.5454
:::::::::::::::::::::::::::	chr7:116608283-116608561(+)$1	278	16	43	24.9090
7777777ccc:::::::FFFFFF::::	chrX:76849214-76849509(-)$1	295	115	142	33.0909
:::::::::::::::::::::::::DD	chr11:101827160-101827546(+)$1	386	224	251	23.7272
ddd^^^^^^^^^^^^^^^^^^^^^^^^	chr4:1215494-1215783(-)$1	289	101	128	21.1818
:::::::::::::::::::::::::::	chr10:114919512-114919785(+)$1	273	92	119	44.6363
IIIIIIILLLBBgggggggasssssss	chr6:33286466-33286762(-)$1	296	149	176	23.1818
:::::::::EEEEE:::::::::::::	chr3:48016819-48017116(-)$1	297	130	157	24.5454
f::::::::::::::::::::::::::	chr15:96880453-96880701(+)$1	248	58	85	25.0909
:::::::::::::::::::::::::::	chr1:10342203-10342486(+)$1	283	110	137	25.0000
^^^^^^^^^^^^^^^^^^^^^ccc555	chr16:15696298-15696592(-)$1	294	82	109	24.4545
rrrrrrrrrbb::eeeeerrrrrrrrr	chr17:7813566-7813859(+)$1	293	72	99	22.8181
::::::::::::::::::::ffffffo	chr16:30733712-30734019(+)$1	307	137	164	27.1818
:::::::::::::::::::::::::::	chrX:21863303-21863595(+)$1	292	118	145	26.8181
xxxxxxxxeeeee55555ccccccccc	chrX:151129623-151129885(-)$1	262	106	133	25.7272
::::::::::::::::::BBKKFFFFF	chr19:39201878-39202132(+)$1	254	6	33	36.0909

#DB
...............((((((..(((.	chr5:176917489-176917804(-)$1	1	182	209	26.5454
((...............))........	chr2:130918726-130918985(-)$1	1	20	47	21.9090
...............((((........	chr9:114128801-114129054(-)$1	1	29	56	33.0000
))))))).)).)))).)))))))....	chr2:74599961-74600266(-)$1	1	115	142	23.0909
...........................	chr2:99197899-99198177(+)$1	1	69	96	24.9090
(..((((....................	chr6:33179870-33180182(+)$1	1	163	190	28.0000
.........................))	chr6:168355016-168355260(+)$1	1	85	112	28.1818
...........................	chr19:5238973-5239266(-)$1	1	63	90	38.1818
)))))))...)..))))))........	chr16:2819014-2819299(+)$1	1	122	149	25.0909
...........................	chr16:74339383-74339699(-)$1	1	90	117	22.6363
......)))..........).......	chr1:180042806-180043125(+)$1	1	40	67	22.2727
.........................((	chr17:7369626-7369951(-)$1	1	143	170	30.0909
...........................	chr1:154131417-154131687(-)$1	1	92	119	26.2727
(.(..(.((((................	chr20:35090849-35091084(+)$1	1	54	81	26.5454
..........................(	chr10:102283748-102284031(-)$1	1	45	72	25.4545
.)))...((...((...(((......)	chr1:176137759-176138057(-)$1	1	182	209	21.3636
.((((((((...((((((.........	chr11:101827393-101827693(+)$1	1	135	162	23.0909
(.((((.(.((((((((((((.(((.(	chr16:2819099-2819363(+)$1	1	37	64	25.0909
(((.........(((.((...((((((	chr6:32083629-32083902(-)$1	1	48	75	19.6363
((.........................	chrX:70468538-70468828(-)$1	1	121	148	35.2727
.......((..((.........))..)	chr11:46686264-46686552(+)$1	1	106	133	21.0909
...........................	chr3:133347461-133347770(-)$1	1	143	170	27.4545
........((((((..(((((((....	chr9:71849237-71849519(+)$1	1	55	82	31.4545
...........................	chr2:70129274-70129609(+)$1	1	66	93	20.6363
((.......................))	chr5:112227542-112227835(-)$1	1	80	107	23.3636
...........................	chr19:42839801-42840202(+)$1	1	158	185	28.4545
)....)))))).)))))).)))))..(	chr14:23777866-23778135(+)$1	1	116	143	24.0000
)))).......................	chr1:32045732-32046001(+)$1	1	32	59	38.7272
......)))).................	chr11:85671692-85671980(-)$1	1	122	149	28.7272
..............((((.(((.((((	chr14:23993907-23994185(+)$1	1	114	141	29.4545
....((..........)).........	chr12:120150389-120150672(-)$1	1	85	112	28.0909
.................))........	chr19:47230726-47231055(-)$1	1	150	177	31.0000
.........(((((.(((.((......	chr22:40749181-40749471(+)$1	1	110	137	25.8181
.(((..((...(((((((.........	chr9:139917409-139917703(-)$1	1	135	162	24.4545
...........................	chr12:42623920-42624191(-)$1	1	74	101	29.2727
...........................	chr12:7045584-7045878(+)$1	1	16	43	25.5454
......((..((.((((..........	chr9:13186284-13186541(-)$1	1	47	74	21.6363
............((....(((.(((..	chr8:62588756-62589014(-)$1	1	101	128	23.0000
........(((((((..(((((((.((	chr6:35447705-35447940(-)$1	1	12	39	34.5454
...........................	chr9:98236313-98236621(-)$1	1	160	187	23.5454
...........................	chr7:116608283-116608561(+)$1	1	16	43	24.9090
.......))).......((((((....	chrX:76849214-76849509(-)$1	1	115	142	33.0909
.........................))	chr11:101827160-101827546(+)$1	1	224	251	23.7272
(((........................	chr4:1215494-1215783(-)$1	1	101	128	21.1818
...........................	chr10:114919512-114919785(+)$1	1	92	119	44.6363
(((((((...((((((((((.......	chr6:33286466-33286762(-)$1	1	149	176	23.1818
.........))))).............	chr3:48016819-48017116(-)$1	1	130	157	24.5454
)..........................	chr15:96880453-96880701(+)$1	1	58	85	25.0909
...........................	chr1:10342203-10342486(+)$1	1	110	137	25.0000
.....................)))...	chr16:15696298-15696592(-)$1	1	82	109	24.4545
.........))..(((((.........	chr17:7813566-7813859(+)$1	1	72	99	22.8181
....................((((((.	chr16:30733712-30734019(+)$1	1	137	164	27.1818
...........................	chrX:21863303-21863595(+)$1	1	118	145	26.8181
........))))).....)))))))))	chrX:151129623-151129885(-)$1	1	106	133	25.7272
..................((..(((((	chr19:39201878-39202132(+)$1	1	6	33	36.0909

#PSSM
u : 0.63	U : 0.20	C : 0.07	c : 0.05	G : 0.03	
c : 0.56	C : 0.25	u : 0.09	U : 0.05	g : 0.01	a : 0.01	
u : 0.52	U : 0.25	c : 0.14	C : 0.03	g : 0.01	A : 0.01	
u : 0.49	U : 0.25	c : 0.12	g : 0.03	a : 0.03	C : 0.03	G : 0.01	
u : 0.47	U : 0.23	c : 0.20	C : 0.03	A : 0.01	g : 0.01	G : 0.01	
c : 0.45	u : 0.23	C : 0.16	U : 0.09	G : 0.01	g : 0.01	a : 0.01	
u : 0.65	U : 0.20	c : 0.09	G : 0.03	C : 0.01	
c : 0.58	C : 0.18	u : 0.14	U : 0.03	G : 0.03	g : 0.01	
u : 0.67	U : 0.18	c : 0.07	C : 0.05	A : 0.01	
c : 0.47	u : 0.21	C : 0.14	U : 0.09	a : 0.03	G : 0.01	g : 0.01	
u : 0.52	U : 0.21	c : 0.21	C : 0.03	
c : 0.41	u : 0.25	C : 0.23	g : 0.03	U : 0.01	a : 0.01	A : 0.01	
u : 0.65	U : 0.23	c : 0.07	C : 0.03	
c : 0.52	C : 0.18	u : 0.10	U : 0.07	g : 0.05	a : 0.03	G : 0.01	
u : 0.49	U : 0.27	c : 0.20	a : 0.03	
c : 0.36	u : 0.30	C : 0.18	U : 0.05	g : 0.03	G : 0.01	A : 0.01	a : 0.01	
u : 0.43	c : 0.27	U : 0.23	C : 0.03	g : 0.01	
c : 0.50	C : 0.16	u : 0.14	U : 0.07	G : 0.03	a : 0.03	g : 0.03	
u : 0.56	U : 0.20	c : 0.16	C : 0.05	G : 0.01	
c : 0.58	C : 0.18	u : 0.12	U : 0.07	G : 0.01	g : 0.01	
u : 0.65	U : 0.21	c : 0.07	C : 0.03	A : 0.01	
c : 0.45	u : 0.23	C : 0.14	U : 0.09	G : 0.03	a : 0.01	A : 0.01	
c : 0.45	u : 0.20	U : 0.12	C : 0.10	G : 0.07	a : 0.01	A : 0.01	
c : 0.50	C : 0.30	u : 0.12	a : 0.03	A : 0.01	
u : 0.63	U : 0.21	C : 0.09	c : 0.03	A : 0.01	
u : 0.40	U : 0.21	c : 0.20	G : 0.07	C : 0.05	g : 0.03	A : 0.01	
u : 0.43	U : 0.18	c : 0.16	C : 0.12	A : 0.03	a : 0.01	G : 0.01	g : 0.01	

#score	1475.3636363636374
#seq	55
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_transcript_m3_run2.nuc.txt

#NT
UGUG	chr17:79805106-79805323(-)$1	217	52	56	11.9999
UGUG	chr7:10977644-10977875(-)$1	231	194	198	11.9999
UGUG	chr5:74645859-74646073(+)$1	214	28	32	11.9999
UGUG	chr19:49424311-49424563(+)$1	252	65	69	11.9999
UGUG	chr11:88027456-88027775(-)$1	319	79	83	11.9999
UGUG	chr1:113460432-113460718(-)$1	286	155	159	11.9999
UGUG	chr15:45007702-45007927(+)$1	225	153	157	11.9999
UGUG	chr21:33039499-33039757(+)$1	258	92	96	11.9999
UGUG	chr11:62652044-62652262(+)$1	218	154	158	11.9999
UGUG	chr17:79801823-79802064(-)$1	241	12	16	11.9999
UGUG	chr1:225592005-225592245(-)$1	240	136	140	11.9999
UGUG	chr5:177019569-177019776(+)$1	207	79	83	11.9999
Ugug	chr12:104333295-104333502(+)$1	207	188	192	11.9999
UGUG	chr12:104336972-104337197(+)$1	225	129	133	11.9999
UGUG	chr18:9399272-9399575(+)$1	303	77	81	11.9999
UGUG	chr16:74519593-74519877(-)$1	284	131	135	11.9999
UGUG	chr16:23598450-23598715(-)$1	265	12	16	11.9999
UGUG	chr1:17747109-17747315(-)$1	206	27	31	11.9999
UGUG	chr9:35067832-35068085(-)$1	253	199	203	11.9999
UGUG	chr22:18080859-18081102(-)$1	243	30	34	11.9999
UGUG	chr9:90345200-90345475(+)$1	275	21	25	11.9999
UGUG	chr11:2417092-2417301(+)$1	209	67	71	11.9999
UGUG	chr4:83748422-83748685(-)$1	263	202	206	11.9999
UGUG	chr1:113459951-113460173(-)$1	222	170	174	11.9999
UGUG	chr15:64448897-64449113(-)$1	216	159	163	11.9999
UGUG	chr11:88042229-88042485(-)$1	256	35	39	11.9999
UGUG	chr7:72988250-72988514(-)$1	264	122	126	11.9999
UGUG	chr11:125489846-125490113(+)$1	267	34	38	11.9999
UGUG	chr1:207932883-207933101(+)$1	218	46	50	11.9999
UGUG	chr1:160319283-160319559(+)$1	276	21	25	11.9999
UGUG	chr2:55201778-55202001(-)$1	223	114	118	11.9999
UGUG	chr15:64452267-64452490(-)$1	223	7	11	11.9999
UGUG	chr17:7489946-7490189(+)$1	243	141	145	11.9999
UGUG	chr3:141625968-141626203(+)$1	235	207	211	11.9999
UGUG	chrX:48385542-48385773(+)$1	231	17	21	11.9999
UGUG	chr1:55524083-55524347(+)$1	264	33	37	11.9999
UGUG	chr17:1674225-1674542(+)$1	317	59	63	11.9999
UGUG	chr5:102538707-102538967(+)$1	260	54	58	11.9999
UGUG	chr12:104336325-104336545(+)$1	220	89	93	11.9999
UGUG	chr19:44273496-44273787(-)$1	291	57	61	11.9999
UGUG	chr4:139153323-139153580(-)$1	257	10	14	11.9999
UGUG	chr1:55341514-55341749(-)$1	235	18	22	11.9999
UGUG	chr1:207940336-207940641(+)$1	305	155	159	11.9999
UGUG	chr1:113460119-113460376(-)$1	257	11	15	11.9999
UGUG	chrX:47444961-47445166(+)$1	205	23	27	11.9999
ugug	chr11:62655506-62655711(+)$1	205	41	45	11.9999
UGUG	chr11:62399961-62400188(-)$1	227	4	8	11.9999
UGUG	chr19:54377051-54377303(+)$1	252	173	177	11.9999
UGUG	chr19:42462336-42462584(-)$1	248	136	140	11.9999
UGUG	chrX:30237122-30237394(+)$1	272	201	205	11.9999
UGUG	chr12:104336765-104337018(+)$1	253	65	69	11.9999
UGUG	chr13:48830267-48830514(+)$1	247	63	67	11.9999
UGUG	chr1:111440334-111440548(+)$1	214	118	122	11.9999
UGUG	chr12:58109798-58110073(+)$1	275	39	43	11.9999
UGUG	chr7:103004503-103004806(+)$1	303	61	65	11.9999
UGUG	chr12:50152365-50152576(+)$1	211	88	92	11.9999
UGUG	chr12:112459985-112460240(+)$1	255	203	207	11.9999
UGUG	chr1:113456658-113456887(-)$1	229	79	83	11.9999
UGUG	chr11:62393814-62394017(-)$1	203	42	46	11.9999
UGUG	chr6:170852587-170852835(-)$1	248	202	206	11.9999
UGUG	chr11:6638169-6638466(-)$1	297	182	186	11.9999
UGUG	chr22:38875558-38875821(+)$1	263	54	58	11.9999
UGUG	chr9:124111330-124111597(-)$1	267	34	38	11.9999
UGUG	chr11:62406380-62406627(-)$1	247	202	206	11.9999
UGUG	chr9:97213653-97213907(+)$1	254	146	150	11.9999
UGUG	chr11:125488244-125488510(+)$1	266	123	127	11.9999
UGUG	chr2:223787371-223787649(+)$1	278	192	196	11.9999
UGUG	chr10:17272567-17272809(+)$1	242	19	23	11.9999
UGUG	chr12:56553753-56554019(+)$1	266	12	16	11.9999
UGUG	chr13:48832160-48832473(+)$1	313	142	146	11.9999
UGUG	chr6:33384295-33384645(-)$1	350	95	99	11.9999
UGUG	chr7:148702908-148703169(-)$1	261	152	156	11.9999
UGUG	chr11:47605771-47606027(+)$1	256	21	25	11.9999

#otherMatches

#Struct PSSM
ffff	chr11:121177956-121178221(+)$1	265	101	105	11.9999
!!dd	chr17:79805106-79805323(-)$1	217	52	56	11.9999
hhhh	chr7:10977644-10977875(-)$1	231	194	198	11.9999
ffff	chr5:74645859-74646073(+)$1	214	28	32	11.9999
d22d	chr19:49424311-49424563(+)$1	252	65	69	11.9999
mmma	chr11:88027456-88027775(-)$1	319	79	83	11.9999
eeeC	chr1:113460432-113460718(-)$1	286	155	159	11.9999
c]a:	chr15:45007702-45007927(+)$1	225	153	157	11.9999
:DDD	chr21:33039499-33039757(+)$1	258	92	96	11.9999
9999	chr11:62652044-62652262(+)$1	218	154	158	11.9999
C{AK	chr17:79801823-79802064(-)$1	241	12	16	11.9999
D}CC	chr1:225592005-225592245(-)$1	240	136	140	11.9999
e"""	chr5:177019569-177019776(+)$1	207	79	83	11.9999
nnnn	chr12:104333295-104333502(+)$1	207	188	192	11.9999
gg%%	chr12:104336972-104337197(+)$1	225	129	133	11.9999
mmcc	chr18:9399272-9399575(+)$1	303	77	81	11.9999
hh22	chr16:74519593-74519877(-)$1	284	131	135	11.9999
::FF	chr16:23598450-23598715(-)$1	265	12	16	11.9999
DDDD	chr1:17747109-17747315(-)$1	206	27	31	11.9999
gggg	chr9:35067832-35068085(-)$1	253	199	203	11.9999
ff]a	chr22:18080859-18081102(-)$1	243	30	34	11.9999
DDDa	chr9:90345200-90345475(+)$1	275	21	25	11.9999
eeee	chr11:2417092-2417301(+)$1	209	67	71	11.9999
EE}D	chr4:83748422-83748685(-)$1	263	202	206	11.9999
[ddd	chr1:113459951-113460173(-)$1	222	170	174	11.9999
glll	chr15:64448897-64449113(-)$1	216	159	163	11.9999
eeee	chr11:88042229-88042485(-)$1	256	35	39	11.9999
[ddd	chr7:72988250-72988514(-)$1	264	122	126	11.9999
veee	chr11:125489846-125490113(+)$1	267	34	38	11.9999
dd]b	chr1:207932883-207933101(+)$1	218	46	50	11.9999
f!!c	chr1:160319283-160319559(+)$1	276	21	25	11.9999
eeee	chr2:55201778-55202001(-)$1	223	114	118	11.9999
::::	chr15:64452267-64452490(-)$1	223	7	11	11.9999
b]bb	chr17:7489946-7490189(+)$1	243	141	145	11.9999
nncc	chr3:141625968-141626203(+)$1	235	207	211	11.9999
dddd	chrX:48385542-48385773(+)$1	231	17	21	11.9999
]ddd	chr1:55524083-55524347(+)$1	264	33	37	11.9999
CCCB	chr17:1674225-1674542(+)$1	317	59	63	11.9999
eeee	chr5:102538707-102538967(+)$1	260	54	58	11.9999
ffff	chr12:104336325-104336545(+)$1	220	89	93	11.9999
eeee	chr19:44273496-44273787(-)$1	291	57	61	11.9999
dddf	chr4:139153323-139153580(-)$1	257	10	14	11.9999
dddm	chr1:55341514-55341749(-)$1	235	18	22	11.9999
cccJ	chr1:207940336-207940641(+)$1	305	155	159	11.9999
eee!	chr1:113460119-113460376(-)$1	257	11	15	11.9999
ddcc	chrX:47444961-47445166(+)$1	205	23	27	11.9999
:::E	chr11:62655506-62655711(+)$1	205	41	45	11.9999
::FF	chr11:62399961-62400188(-)$1	227	4	8	11.9999
ee:e	chr19:54377051-54377303(+)$1	252	173	177	11.9999
eeee	chr19:42462336-42462584(-)$1	248	136	140	11.9999
ccc[	chrX:30237122-30237394(+)$1	272	201	205	11.9999
::::	chr12:104336765-104337018(+)$1	253	65	69	11.9999
uuuu	chr13:48830267-48830514(+)$1	247	63	67	11.9999
HHHH	chr1:111440334-111440548(+)$1	214	118	122	11.9999
CCCF	chr12:58109798-58110073(+)$1	275	39	43	11.9999
ddd:	chr7:103004503-103004806(+)$1	303	61	65	11.9999
dddd	chr12:50152365-50152576(+)$1	211	88	92	11.9999
nnnh	chr12:112459985-112460240(+)$1	255	203	207	11.9999
ppph	chr1:113456658-113456887(-)$1	229	79	83	11.9999
====	chr11:62393814-62394017(-)$1	203	42	46	11.9999
ggqq	chr6:170852587-170852835(-)$1	248	202	206	11.9999
GGGG	chr11:6638169-6638466(-)$1	297	182	186	11.9999
eeee	chr22:38875558-38875821(+)$1	263	54	58	11.9999
oooo	chr9:124111330-124111597(-)$1	267	34	38	11.9999
d22g	chr11:62406380-62406627(-)$1	247	202	206	11.9999
gggg	chr9:97213653-97213907(+)$1	254	146	150	11.9999
[a[e	chr11:125488244-125488510(+)$1	266	123	127	11.9999
GGGG	chr2:223787371-223787649(+)$1	278	192	196	11.9999
FEEE	chr10:17272567-17272809(+)$1	242	19	23	11.9999
"bbi	chr12:56553753-56554019(+)$1	266	12	16	11.9999
:ccc	chr13:48832160-48832473(+)$1	313	142	146	11.9999
EEEE	chr6:33384295-33384645(-)$1	350	95	99	11.9999
offf	chr7:148702908-148703169(-)$1	261	152	156	11.9999
ssss	chr11:47605771-47606027(+)$1	256	21	25	11.9999

#DB
))))	chr11:121177956-121178221(+)$1	1	101	105	11.9999
..((	chr17:79805106-79805323(-)$1	1	52	56	11.9999
))))	chr7:10977644-10977875(-)$1	1	194	198	11.9999
((((	chr5:74645859-74646073(+)$1	1	28	32	11.9999
)..)	chr19:49424311-49424563(+)$1	1	65	69	11.9999
...)	chr11:88027456-88027775(-)$1	1	79	83	11.9999
))))	chr1:113460432-113460718(-)$1	1	155	159	11.9999
).).	chr15:45007702-45007927(+)$1	1	153	157	11.9999
.)))	chr21:33039499-33039757(+)$1	1	92	96	11.9999
....	chr11:62652044-62652262(+)$1	1	154	158	11.9999
(.(.	chr17:79801823-79802064(-)$1	1	12	16	11.9999
).))	chr1:225592005-225592245(-)$1	1	136	140	11.9999
(...	chr5:177019569-177019776(+)$1	1	79	83	11.9999
....	chr12:104333295-104333502(+)$1	1	188	192	11.9999
((..	chr12:104336972-104337197(+)$1	1	129	133	11.9999
..))	chr18:9399272-9399575(+)$1	1	77	81	11.9999
))..	chr16:74519593-74519877(-)$1	1	131	135	11.9999
..((	chr16:23598450-23598715(-)$1	1	12	16	11.9999
((((	chr1:17747109-17747315(-)$1	1	27	31	11.9999
))))	chr9:35067832-35068085(-)$1	1	199	203	11.9999
)).)	chr22:18080859-18081102(-)$1	1	30	34	11.9999
((((	chr9:90345200-90345475(+)$1	1	21	25	11.9999
))))	chr11:2417092-2417301(+)$1	1	67	71	11.9999
)).)	chr4:83748422-83748685(-)$1	1	202	206	11.9999
.(((	chr1:113459951-113460173(-)$1	1	170	174	11.9999
(...	chr15:64448897-64449113(-)$1	1	159	163	11.9999
))))	chr11:88042229-88042485(-)$1	1	35	39	11.9999
.(((	chr7:72988250-72988514(-)$1	1	122	126	11.9999
.)))	chr11:125489846-125490113(+)$1	1	34	38	11.9999
)).)	chr1:207932883-207933101(+)$1	1	46	50	11.9999
(..(	chr1:160319283-160319559(+)$1	1	21	25	11.9999
((((	chr2:55201778-55202001(-)$1	1	114	118	11.9999
....	chr15:64452267-64452490(-)$1	1	7	11	11.9999
).))	chr17:7489946-7490189(+)$1	1	141	145	11.9999
..))	chr3:141625968-141626203(+)$1	1	207	211	11.9999
((((	chrX:48385542-48385773(+)$1	1	17	21	11.9999
.)))	chr1:55524083-55524347(+)$1	1	33	37	11.9999
((((	chr17:1674225-1674542(+)$1	1	59	63	11.9999
))))	chr5:102538707-102538967(+)$1	1	54	58	11.9999
((((	chr12:104336325-104336545(+)$1	1	89	93	11.9999
))))	chr19:44273496-44273787(-)$1	1	57	61	11.9999
((((	chr4:139153323-139153580(-)$1	1	10	14	11.9999
(((.	chr1:55341514-55341749(-)$1	1	18	22	11.9999
)))(	chr1:207940336-207940641(+)$1	1	155	159	11.9999
(((.	chr1:113460119-113460376(-)$1	1	11	15	11.9999
((((	chrX:47444961-47445166(+)$1	1	23	27	11.9999
...(	chr11:62655506-62655711(+)$1	1	41	45	11.9999
..((	chr11:62399961-62400188(-)$1	1	4	8	11.9999
)).(	chr19:54377051-54377303(+)$1	1	173	177	11.9999
))))	chr19:42462336-42462584(-)$1	1	136	140	11.9999
(((.	chrX:30237122-30237394(+)$1	1	201	205	11.9999
....	chr12:104336765-104337018(+)$1	1	65	69	11.9999
....	chr13:48830267-48830514(+)$1	1	63	67	11.9999
((((	chr1:111440334-111440548(+)$1	1	118	122	11.9999
((((	chr12:58109798-58110073(+)$1	1	39	43	11.9999
))).	chr7:103004503-103004806(+)$1	1	61	65	11.9999
((((	chr12:50152365-50152576(+)$1	1	88	92	11.9999
...)	chr12:112459985-112460240(+)$1	1	203	207	11.9999
...)	chr1:113456658-113456887(-)$1	1	79	83	11.9999
((((	chr11:62393814-62394017(-)$1	1	42	46	11.9999
((..	chr6:170852587-170852835(-)$1	1	202	206	11.9999
))))	chr11:6638169-6638466(-)$1	1	182	186	11.9999
((((	chr22:38875558-38875821(+)$1	1	54	58	11.9999
....	chr9:124111330-124111597(-)$1	1	34	38	11.9999
)..)	chr11:62406380-62406627(-)$1	1	202	206	11.9999
((((	chr9:97213653-97213907(+)$1	1	146	150	11.9999
.(.(	chr11:125488244-125488510(+)$1	1	123	127	11.9999
))))	chr2:223787371-223787649(+)$1	1	192	196	11.9999
((((	chr10:17272567-17272809(+)$1	1	19	23	11.9999
.(((	chr12:56553753-56554019(+)$1	1	12	16	11.9999
.(((	chr13:48832160-48832473(+)$1	1	142	146	11.9999
((((	chr6:33384295-33384645(-)$1	1	95	99	11.9999
.)))	chr7:148702908-148703169(-)$1	1	152	156	11.9999
....	chr11:47605771-47606027(+)$1	1	21	25	11.9999

#PSSM
U : 0.98	u : 0.01	
G : 0.97	g : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	

#score	887.9999999999995
#seq	74
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_UTR_m2_run1.nuc.txt

#NT
AAAAUGU	chr3:169805629-169805877(-)$1	248	68	75	18.3404
AAAAUGA	chr12:22843327-22843556(+)$1	229	13	20	14.1914
AAAAUGU	chr13:45912604-45912851(-)$1	247	50	57	18.3404
AAAAUAU	chr5:130799559-130799834(-)$1	275	232	239	15.6808
AAAAUGU	chr10:94455128-94455437(+)$1	309	205	212	18.3404
AAAAUGU	chr8:124826932-124827178(+)$1	246	46	53	18.3404
AAAAUGU	chr4:20729793-20730124(+)$1	331	163	170	18.3404
AAAAUGU	chr16:20749299-20749571(-)$1	272	26	33	18.3404
AAAAUGU	chr7:102964734-102965049(-)$1	315	54	61	18.3404
AAAAUGU	chr11:9316610-9316861(-)$1	251	73	80	18.3404
AAAAUGU	chrX:122735635-122735856(-)$1	221	2	9	18.3404
AAAAUGU	chr1:184659658-184659944(-)$1	286	224	231	18.3404
UAAAUGU	chr1:245250613-245250901(+)$1	288	46	53	14.4042
AAAAUGU	chr6:88051350-88051636(+)$1	286	34	41	18.3404
AAAAUUU	chrX:154307051-154307320(+)$1	269	17	24	15.7872
AAAAUAU	chr7:43688182-43688455(-)$1	273	166	173	15.6808
AAAAUCU	chr3:140682029-140682255(+)$1	226	196	203	15.3617
AAAAUUU	chr7:63986173-63986427(-)$1	254	53	60	15.7872
AAAAUGA	chr12:69663369-69663588(+)$1	219	34	41	14.1914
AAAAUUU	chr6:117053456-117053825(+)$1	369	45	52	15.7872
UAAAUGU	chr12:104179202-104179532(-)$1	330	129	136	14.4042
UAAAUGU	chr3:3190323-3190571(+)$1	248	8	15	14.4042
AAAAUGU	chrX:102940139-102940451(-)$1	312	102	109	18.3404
AAAAUUU	chr8:124260748-124261026(-)$1	278	91	98	15.7872
AAAAUAU	chr3:158409850-158410132(+)$1	282	58	65	15.6808
AAAAUGU	chr21:37748436-37748667(+)$1	231	202	209	18.3404
AAAAUGU	chr7:129805976-129806232(-)$1	256	76	83	18.3404
AAAAUAU	chr6:83747308-83747596(-)$1	288	84	91	15.6808
AAAAUGU	chr3:132400457-132400793(-)$1	336	122	129	18.3404
UAAAUGU	chr2:191799848-191800102(+)$1	254	24	31	14.4042
AAAAUGU	chr6:4064347-4064585(+)$1	238	203	210	18.3404
AAAAUGU	chr1:33485263-33485538(-)$1	275	190	197	18.3404
AAAAUGA	chr7:151832169-151832402(-)$1	233	24	31	14.1914
AAAAUCU	chr11:34120243-34120510(+)$1	267	59	66	15.3617
AAAAUCU	chrX:77161863-77162172(+)$1	309	105	112	15.3617
AAAAUUU	chr12:49082171-49082465(-)$1	294	103	110	15.7872
AAAAUGU	chr1:173903348-173903611(-)$1	263	39	46	18.3404
AAAAUGU	chr12:110788228-110788478(+)$1	250	214	221	18.3404
UAAAUGU	chr5:87498541-87498812(-)$1	271	83	90	14.4042
AAAAUAU	chr11:86055936-86056219(+)$1	283	45	52	15.6808
AAAAUGA	chr16:66850973-66851230(-)$1	257	82	89	14.1914
AAAAUGU	chr2:152659224-152659449(-)$1	225	73	80	18.3404
AAAAUAU	chr3:142137129-142137392(-)$1	263	108	115	15.6808
AAAAUUU	chr1:200520557-200520849(-)$1	292	77	84	15.7872
aaaauuu	chr12:25386879-25387160(-)$1	281	40	47	15.7872
AAAAUGU	chr8:74202861-74203113(-)$1	252	77	84	18.3404

#otherMatches

#Struct PSSM
ddmmmmd	chr2:242026501-242026837(-)$1	336	72	79	18.3404
!!fffff	chr3:169805629-169805877(-)$1	248	68	75	18.3404
DDDiiii	chr12:22843327-22843556(+)$1	229	13	20	14.1914
ee]ffff	chr13:45912604-45912851(-)$1	247	50	57	18.3404
dlllddd	chr5:130799559-130799834(-)$1	275	232	239	15.6808
blllbb]	chr10:94455128-94455437(+)$1	309	205	212	18.3404
clllccc	chr8:124826932-124827178(+)$1	246	46	53	18.3404
ffffggg	chr4:20729793-20730124(+)$1	331	163	170	18.3404
zzzzzzz	chr16:20749299-20749571(-)$1	272	26	33	18.3404
>hhhhhh	chr7:102964734-102965049(-)$1	315	54	61	18.3404
eeeeeqq	chr11:9316610-9316861(-)$1	251	73	80	18.3404
:::cccf	chrX:122735635-122735856(-)$1	221	2	9	18.3404
Jdddd[a	chr1:184659658-184659944(-)$1	286	224	231	18.3404
ggg''''	chr1:245250613-245250901(+)$1	288	46	53	14.4042
fff]fff	chr6:88051350-88051636(+)$1	286	34	41	18.3404
e::::::	chrX:154307051-154307320(+)$1	269	17	24	15.7872
fffoooo	chr7:43688182-43688455(-)$1	273	166	173	15.6808
:::IIII	chr3:140682029-140682255(+)$1	226	196	203	15.3617
ee:::::	chr7:63986173-63986427(-)$1	254	53	60	15.7872
:::::::	chr12:69663369-69663588(+)$1	219	34	41	14.1914
6hhhhhh	chr6:117053456-117053825(+)$1	369	45	52	15.7872
d[ddddn	chr12:104179202-104179532(-)$1	330	129	136	14.4042
:::::::	chr3:3190323-3190571(+)$1	248	8	15	14.4042
666666d	chrX:102940139-102940451(-)$1	312	102	109	18.3404
uuuuuff	chr8:124260748-124261026(-)$1	278	91	98	15.7872
ffffff>	chr3:158409850-158410132(+)$1	282	58	65	15.6808
eeeefff	chr21:37748436-37748667(+)$1	231	202	209	18.3404
c333fff	chr7:129805976-129806232(-)$1	256	76	83	18.3404
=======	chr6:83747308-83747596(-)$1	288	84	91	15.6808
]gggggg	chr3:132400457-132400793(-)$1	336	122	129	18.3404
=======	chr2:191799848-191800102(+)$1	254	24	31	14.4042
?EEEEEY	chr6:4064347-4064585(+)$1	238	203	210	18.3404
ff[ffff	chr1:33485263-33485538(-)$1	275	190	197	18.3404
FFLLLDD	chr7:151832169-151832402(-)$1	233	24	31	14.1914
###bbdd	chr11:34120243-34120510(+)$1	267	59	66	15.3617
D______	chrX:77161863-77162172(+)$1	309	105	112	15.3617
WWWWWWW	chr12:49082171-49082465(-)$1	294	103	110	15.7872
:::::BB	chr1:173903348-173903611(-)$1	263	39	46	18.3404
4444bb4	chr12:110788228-110788478(+)$1	250	214	221	18.3404
xxxxxxx	chr5:87498541-87498812(-)$1	271	83	90	14.4042
EEE::ee	chr11:86055936-86056219(+)$1	283	45	52	15.6808
:::::::	chr16:66850973-66851230(-)$1	257	82	89	14.1914
33eeeee	chr2:152659224-152659449(-)$1	225	73	80	18.3404
!cccooo	chr3:142137129-142137392(-)$1	263	108	115	15.6808
+++++++	chr1:200520557-200520849(-)$1	292	77	84	15.7872
J::::::	chr12:25386879-25387160(-)$1	281	40	47	15.7872
dddddds	chr8:74202861-74203113(-)$1	252	77	84	18.3404

#DB
((....)	chr2:242026501-242026837(-)$1	1	72	79	18.3404
..(((((	chr3:169805629-169805877(-)$1	1	68	75	18.3404
(((((((	chr12:22843327-22843556(+)$1	1	13	20	14.1914
)).))))	chr13:45912604-45912851(-)$1	1	50	57	18.3404
(...)))	chr5:130799559-130799834(-)$1	1	232	239	15.6808
(...)).	chr10:94455128-94455437(+)$1	1	205	212	18.3404
(...)))	chr8:124826932-124827178(+)$1	1	46	53	18.3404
(((((((	chr4:20729793-20730124(+)$1	1	163	170	18.3404
.......	chr16:20749299-20749571(-)$1	1	26	33	18.3404
.))))))	chr7:102964734-102965049(-)$1	1	54	61	18.3404
(((((..	chr11:9316610-9316861(-)$1	1	73	80	18.3404
...((((	chrX:122735635-122735856(-)$1	1	2	9	18.3404
)((((.(	chr1:184659658-184659944(-)$1	1	224	231	18.3404
(((....	chr1:245250613-245250901(+)$1	1	46	53	14.4042
))).)))	chr6:88051350-88051636(+)$1	1	34	41	18.3404
)......	chrX:154307051-154307320(+)$1	1	17	24	15.7872
(((....	chr7:43688182-43688455(-)$1	1	166	173	15.6808
...))))	chr3:140682029-140682255(+)$1	1	196	203	15.3617
)).....	chr7:63986173-63986427(-)$1	1	53	60	15.7872
.......	chr12:69663369-69663588(+)$1	1	34	41	14.1914
.))))))	chr6:117053456-117053825(+)$1	1	45	52	15.7872
(.((((.	chr12:104179202-104179532(-)$1	1	129	136	14.4042
.......	chr3:3190323-3190571(+)$1	1	8	15	14.4042
......)	chrX:102940139-102940451(-)$1	1	102	109	18.3404
.....))	chr8:124260748-124261026(-)$1	1	91	98	15.7872
)))))).	chr3:158409850-158410132(+)$1	1	58	65	15.6808
)))))))	chr21:37748436-37748667(+)$1	1	202	209	18.3404
)...)))	chr7:129805976-129806232(-)$1	1	76	83	18.3404
)))))))	chr6:83747308-83747596(-)$1	1	84	91	15.6808
.))))))	chr3:132400457-132400793(-)$1	1	122	129	18.3404
(((((((	chr2:191799848-191800102(+)$1	1	24	31	14.4042
.))))).	chr6:4064347-4064585(+)$1	1	203	210	18.3404
((.((((	chr1:33485263-33485538(-)$1	1	190	197	18.3404
((...((	chr7:151832169-151832402(-)$1	1	24	31	14.1914
...((((	chr11:34120243-34120510(+)$1	1	59	66	15.3617
)......	chrX:77161863-77162172(+)$1	1	105	112	15.3617
.......	chr12:49082171-49082465(-)$1	1	103	110	15.7872
.....((	chr1:173903348-173903611(-)$1	1	39	46	18.3404
....)).	chr12:110788228-110788478(+)$1	1	214	221	18.3404
.......	chr5:87498541-87498812(-)$1	1	83	90	14.4042
(((..((	chr11:86055936-86056219(+)$1	1	45	52	15.6808
.......	chr16:66850973-66851230(-)$1	1	82	89	14.1914
..)))))	chr2:152659224-152659449(-)$1	1	73	80	18.3404
.(((...	chr3:142137129-142137392(-)$1	1	108	115	15.6808
.......	chr1:200520557-200520849(-)$1	1	77	84	15.7872
(......	chr12:25386879-25387160(-)$1	1	40	47	15.7872
((((((.	chr8:74202861-74203113(-)$1	1	77	84	18.3404

#PSSM
A : 0.87	U : 0.10	a : 0.02	
A : 0.97	a : 0.02	
A : 0.97	a : 0.02	
A : 0.97	a : 0.02	
U : 0.97	u : 0.02	
G : 0.65	A : 0.12	U : 0.12	C : 0.06	u : 0.02	
U : 0.89	A : 0.08	u : 0.02	

#score	782.9574468085109
#seq	47
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_CDS_m1_run2.nuc.txt

#NT
GAAGGUGAU	chr3:47951478-47951716(-)$1	238	162	171	12.9375
gaagaagaa	chr14:58755415-58755750(-)$1	335	223	232	13.5625
GAAGCUGCC	chr13:23908429-23908690(-)$1	261	20	29	12.5468
GAAGAAGCA	chr2:152321652-152321887(+)$1	235	196	205	13.1718
GAAGAAGCU	chr13:23911786-23912097(-)$1	311	194	203	12.4687
CAAGAUGCC	chr11:62286278-62286504(-)$1	226	44	53	12.3906
GAAGGUGAG	chr5:180278028-180278349(-)$1	321	110	119	11.8437
GAAGAUGCC	chr11:62297314-62297573(-)$1	259	208	217	16.3750
GAAGAUGAC	chr18:9258480-9258777(+)$1	297	107	116	16.7656
UAAGAUGCC	chr11:62288123-62288396(-)$1	273	28	37	12.3906
GAAGAUGCA	chr8:94748331-94748603(-)$1	272	115	124	17.0000
GAAGAUGCA	chr8:94748278-94748531(-)$1	253	43	52	17.0000
GAAGAUGAA	chr18:19154036-19154308(-)$1	272	65	74	17.3906
GAAGAUUUC	chr3:47163437-47163693(-)$1	256	18	27	12.0000
CAAGAUGAA	chr11:62298409-62298667(-)$1	258	159	168	13.4062
gaagauuca	chr4:2330640-2330998(-)$1	358	215	224	13.6406
GAAGAUUAG	chr6:87969501-87969785(+)$1	284	85	94	12.2343
GAAGCUGCC	chr11:62285506-62285752(-)$1	246	81	90	12.5468
GAAGAUUCC	chr3:47165076-47165349(-)$1	273	67	76	13.0156
GAAGAGGGA	chr1:39800992-39801272(+)$1	280	195	204	11.6093
GAAGAUGGU	chr3:37366018-37366240(+)$1	222	35	44	15.0468
CAAGAUGCC	chr11:62287577-62287784(-)$1	207	22	31	12.3906
GAAGAUUUA	chr1:91403680-91403932(-)$1	252	155	164	12.6250
GAAGAUAUA	chr8:30700685-30700961(-)$1	276	214	223	12.2343
GAAGAAGAU	chr3:121415970-121416260(-)$1	290	17	26	12.8593
GAAGAUGUU	chr17:41246386-41246669(-)$1	283	223	232	15.2812
GAAGAUGGU	chr13:23906473-23906746(-)$1	273	129	138	15.0468
GGAGAUGAU	chr11:63486423-63486743(+)$1	320	253	262	11.8437
CAAGAUGAA	chr11:62300314-62300611(-)$1	297	18	27	13.4062
GAAGAUGCC	chr11:62294267-62294493(-)$1	226	128	137	16.3750
GAAGAUUGU	chr1:155451356-155451640(-)$1	284	146	155	11.6875
GAAAAUGAG	chr4:13604157-13604420(-)$1	263	82	91	11.1406
GAAGUUGUU	chr3:37365709-37365943(+)$1	234	145	154	11.2968
GAAGACGAC	chr3:37367775-37368027(+)$1	252	108	117	12.5468
GAAGAUUCU	chr1:39798462-39798740(+)$1	278	5	14	12.9375
GAAUAUGCC	chr11:5423935-5424185(-)$1	250	95	104	11.7656
GAAGAUAAA	chr7:91632302-91632603(+)$1	301	79	88	13.6406
GAAGAUGGA	chr18:9255706-9256035(+)$1	329	60	69	15.7500
GAAGAUGAA	chr18:19154138-19154478(-)$1	340	235	244	17.3906
GAAGCUGAA	chr3:37368106-37368423(+)$1	317	14	23	13.5625
gaaggugaa	chr18:9255272-9255515(+)$1	243	0	9	13.6406
GAAGAUGCC	chr11:62293793-62294035(-)$1	242	54	63	16.3750
GAAGGUGCA	chr11:62285711-62285983(-)$1	272	60	69	13.2500
UAAGAUGAA	chr1:197073042-197073355(-)$1	313	41	50	13.4062
GAAGAUGCC	chr11:62292324-62292588(-)$1	264	143	152	16.3750
GAAAAUGAA	chr1:203769420-203769659(+)$1	239	61	70	12.9375
GAAAAUGCC	chr11:62291278-62291538(-)$1	260	65	74	11.9218
GAAGAAGCC	chr1:46072982-46073241(+)$1	259	63	72	12.5468
GAAGAUGGU	chr3:37366040-37366267(+)$1	227	13	22	15.0468
GAAGAAGAA	chr15:40917717-40917942(+)$1	225	43	52	13.5625
GAAGAUCAA	chr9:135204696-135204991(-)$1	295	110	119	13.5625
GAAGAGGAU	chr3:47952752-47953022(-)$1	270	142	151	12.5468
AAAGAUGUU	chr20:49509185-49509446(-)$1	261	44	53	11.0625
GAAGAUAUU	chr1:214818463-214818805(+)$1	342	87	96	11.5312
GAAGAUCAA	chr6:64422239-64422514(+)$1	275	39	48	13.5625
GAAGAUUUU	chr13:23910607-23910870(-)$1	263	47	56	11.9218
UAAGAUGUA	chr1:197071854-197072091(-)$1	237	153	162	12.0000
GAAGGUGAC	chr11:62291338-62291666(-)$1	328	98	107	13.0156
GAAGUUGAA	chr4:13603226-13603558(-)$1	332	81	90	13.4062
GAAGAUGCU	chr2:109383620-109383910(+)$1	290	65	74	16.2968
GAAGAUGAA	chr15:40913089-40913334(+)$1	245	159	168	17.3906
UAAGAUGCC	chr11:62288283-62288548(-)$1	265	0	9	12.3906
GAAGCUGAU	chr1:39801287-39801526(+)$1	239	54	63	12.8593

#otherMatches

#Struct PSSM
[ffffffmm	chr4:13602638-13603005(-)$1	367	29	38	12.5468
b:DDDD}HH	chr3:47951478-47951716(-)$1	238	162	171	12.9375
]bb::::::	chr14:58755415-58755750(-)$1	335	223	232	13.5625
EE:eeeees	chr13:23908429-23908690(-)$1	261	20	29	12.5468
333eeeeec	chr2:152321652-152321887(+)$1	235	196	205	13.1718
iiiiiii::	chr13:23911786-23912097(-)$1	311	194	203	12.4687
::eeeeecc	chr11:62286278-62286504(-)$1	226	44	53	12.3906
::eeeeedd	chr5:180278028-180278349(-)$1	321	110	119	11.8437
!!ccc[ccc	chr11:62297314-62297573(-)$1	259	208	217	16.3750
c!!dddd!!	chr18:9258480-9258777(+)$1	297	107	116	16.7656
iiiddddab	chr11:62288123-62288396(-)$1	273	28	37	12.3906
iii!!bb!!	chr8:94748331-94748603(-)$1	272	115	124	17.0000
iii!!bb!!	chr8:94748278-94748531(-)$1	253	43	52	17.0000
::ddddmmm	chr18:19154036-19154308(-)$1	272	65	74	17.3906
FFFFF::::	chr3:47163437-47163693(-)$1	256	18	27	12.0000
E::::::::	chr11:62298409-62298667(-)$1	258	159	168	13.4062
::::::BBG	chr4:2330640-2330998(-)$1	358	215	224	13.6406
>>>>>>>>>	chr6:87969501-87969785(+)$1	284	85	94	12.2343
cc]ffffff	chr11:62285506-62285752(-)$1	246	81	90	12.5468
:::::ffff	chr3:47165076-47165349(-)$1	273	67	76	13.0156
ZZCCC}AEE	chr1:39800992-39801272(+)$1	280	195	204	11.6093
e]ddddccc	chr3:37366018-37366240(+)$1	222	35	44	15.0468
:::eeeeea	chr11:62287577-62287784(-)$1	207	22	31	12.3906
hhhhhhh""	chr1:91403680-91403932(-)$1	252	155	164	12.6250
DDFFFFFF}	chr8:30700685-30700961(-)$1	276	214	223	12.2343
^^^^^^^^^	chr3:121415970-121416260(-)$1	290	17	26	12.8593
dd22ccc::	chr17:41246386-41246669(-)$1	283	223	232	15.2812
hhhhhhhh7	chr13:23906473-23906746(-)$1	273	129	138	15.0468
ff[bb^^^^	chr11:63486423-63486743(+)$1	320	253	262	11.8437
D::::::::	chr11:62300314-62300611(-)$1	297	18	27	13.4062
eee!!bb!!	chr11:62294267-62294493(-)$1	226	128	137	16.3750
oooooeeee	chr1:155451356-155451640(-)$1	284	146	155	11.6875
>>>>>>>>>	chr4:13604157-13604420(-)$1	263	82	91	11.1406
nnnnneeee	chr3:37365709-37365943(+)$1	234	145	154	11.2968
D::::::::	chr3:37367775-37368027(+)$1	252	108	117	12.5468
gggglllgg	chr1:39798462-39798740(+)$1	278	5	14	12.9375
ddd::ffff	chr11:5423935-5424185(-)$1	250	95	104	11.7656
KCCCCCC{E	chr7:91632302-91632603(+)$1	301	79	88	13.6406
nnndddd::	chr18:9255706-9256035(+)$1	329	60	69	15.7500
::ddddmmm	chr18:19154138-19154478(-)$1	340	235	244	17.3906
ttttcccdd	chr3:37368106-37368423(+)$1	317	14	23	13.5625
:EEEEE:::	chr18:9255272-9255515(+)$1	243	0	9	13.6406
"""bb[ccc	chr11:62293793-62294035(-)$1	242	54	63	16.3750
vvggggggg	chr11:62285711-62285983(-)$1	272	60	69	13.2500
cc[dddd""	chr1:197073042-197073355(-)$1	313	41	50	13.4062
ddd]bbDDD	chr11:62292324-62292588(-)$1	264	143	152	16.3750
d55555bb3	chr1:203769420-203769659(+)$1	239	61	70	12.9375
d55555ccc	chr11:62291278-62291538(-)$1	260	65	74	11.9218
::::::fff	chr1:46072982-46073241(+)$1	259	63	72	12.5468
d####bbmm	chr3:37366040-37366267(+)$1	227	13	22	15.0468
DDDDDDBB{	chr15:40917717-40917942(+)$1	225	43	52	13.5625
]ccc:::::	chr9:135204696-135204991(-)$1	295	110	119	13.5625
e[eeeee[f	chr3:47952752-47953022(-)$1	270	142	151	12.5468
PPFFFFFF{	chr20:49509185-49509446(-)$1	261	44	53	11.0625
####fffff	chr1:214818463-214818805(+)$1	342	87	96	11.5312
:::::::::	chr6:64422239-64422514(+)$1	275	39	48	13.5625
=========	chr13:23910607-23910870(-)$1	263	47	56	11.9218
))))dddd"	chr1:197071854-197072091(-)$1	237	153	162	12.0000
cc"""gggg	chr11:62291338-62291666(-)$1	328	98	107	13.0156
sssss====	chr4:13603226-13603558(-)$1	332	81	90	13.4062
ppppppphh	chr2:109383620-109383910(+)$1	290	65	74	16.2968
ee&&&&&&&	chr15:40913089-40913334(+)$1	245	159	168	17.3906
::::::BB{	chr11:62288283-62288548(-)$1	265	0	9	12.3906
eeeebb[bb	chr1:39801287-39801526(+)$1	239	54	63	12.8593

#DB
.((((((..	chr4:13602638-13603005(-)$1	1	29	38	12.5468
).)))).))	chr3:47951478-47951716(-)$1	1	162	171	12.9375
.))......	chr14:58755415-58755750(-)$1	1	223	232	13.5625
((.(((((.	chr13:23908429-23908690(-)$1	1	20	29	12.5468
...))))))	chr2:152321652-152321887(+)$1	1	196	205	13.1718
)))))))..	chr13:23911786-23912097(-)$1	1	194	203	12.4687
..(((((((	chr11:62286278-62286504(-)$1	1	44	53	12.3906
..(((((((	chr5:180278028-180278349(-)$1	1	110	119	11.8437
..(((.(((	chr11:62297314-62297573(-)$1	1	208	217	16.3750
(..((((..	chr18:9258480-9258777(+)$1	1	107	116	16.7656
(((((((((	chr11:62288123-62288396(-)$1	1	28	37	12.3906
(((..((..	chr8:94748331-94748603(-)$1	1	115	124	17.0000
(((..((..	chr8:94748278-94748531(-)$1	1	43	52	17.0000
..((((...	chr18:19154036-19154308(-)$1	1	65	74	17.3906
(((((....	chr3:47163437-47163693(-)$1	1	18	27	12.0000
)........	chr11:62298409-62298667(-)$1	1	159	168	13.4062
......(((	chr4:2330640-2330998(-)$1	1	215	224	13.6406
.........	chr6:87969501-87969785(+)$1	1	85	94	12.2343
)).))))))	chr11:62285506-62285752(-)$1	1	81	90	12.5468
.....((((	chr3:47165076-47165349(-)$1	1	67	76	13.0156
..))).)))	chr1:39800992-39801272(+)$1	1	195	204	11.6093
).)))))))	chr3:37366018-37366240(+)$1	1	35	44	15.0468
...((((((	chr11:62287577-62287784(-)$1	1	22	31	12.3906
(((((((..	chr1:91403680-91403932(-)$1	1	155	164	12.6250
)))))))).	chr8:30700685-30700961(-)$1	1	214	223	12.2343
.........	chr3:121415970-121416260(-)$1	1	17	26	12.8593
))..)))..	chr17:41246386-41246669(-)$1	1	223	232	15.2812
)))))))).	chr13:23906473-23906746(-)$1	1	129	138	15.0468
((.((....	chr11:63486423-63486743(+)$1	1	253	262	11.8437
(........	chr11:62300314-62300611(-)$1	1	18	27	13.4062
(((..((..	chr11:62294267-62294493(-)$1	1	128	137	16.3750
.....))))	chr1:155451356-155451640(-)$1	1	146	155	11.6875
.........	chr4:13604157-13604420(-)$1	1	82	91	11.1406
.....))))	chr3:37365709-37365943(+)$1	1	145	154	11.2968
(........	chr3:37367775-37368027(+)$1	1	108	117	12.5468
((((...))	chr1:39798462-39798740(+)$1	1	5	14	12.9375
)))..((((	chr11:5423935-5424185(-)$1	1	95	104	11.7656
.((((((.(	chr7:91632302-91632603(+)$1	1	79	88	13.6406
...))))..	chr18:9255706-9256035(+)$1	1	60	69	15.7500
..((((...	chr18:19154138-19154478(-)$1	1	235	244	17.3906
....)))((	chr3:37368106-37368423(+)$1	1	14	23	13.5625
.(((((...	chr18:9255272-9255515(+)$1	1	0	9	13.6406
...((.(((	chr11:62293793-62294035(-)$1	1	54	63	16.3750
..)))))))	chr11:62285711-62285983(-)$1	1	60	69	13.2500
((.((((..	chr1:197073042-197073355(-)$1	1	41	50	13.4062
))).)))))	chr11:62292324-62292588(-)$1	1	143	152	16.3750
).....)).	chr1:203769420-203769659(+)$1	1	61	70	12.9375
).....)))	chr11:62291278-62291538(-)$1	1	65	74	11.9218
......(((	chr1:46072982-46073241(+)$1	1	63	72	12.5468
(....((..	chr3:37366040-37366267(+)$1	1	13	22	15.0468
((((((((.	chr15:40917717-40917942(+)$1	1	43	52	13.5625
.))).....	chr9:135204696-135204991(-)$1	1	110	119	13.5625
(.(((((.(	chr3:47952752-47953022(-)$1	1	142	151	12.5468
..((((((.	chr20:49509185-49509446(-)$1	1	44	53	11.0625
....(((((	chr1:214818463-214818805(+)$1	1	87	96	11.5312
.........	chr6:64422239-64422514(+)$1	1	39	48	13.5625
(((((((((	chr13:23910607-23910870(-)$1	1	47	56	11.9218
....((((.	chr1:197071854-197072091(-)$1	1	153	162	12.0000
((...((((	chr11:62291338-62291666(-)$1	1	98	107	13.0156
.....))))	chr4:13603226-13603558(-)$1	1	81	90	13.4062
.......))	chr2:109383620-109383910(+)$1	1	65	74	16.2968
((.......	chr15:40913089-40913334(+)$1	1	159	168	17.3906
......((.	chr11:62288283-62288548(-)$1	1	0	9	12.3906
((((((.((	chr1:39801287-39801526(+)$1	1	54	63	12.8593

#PSSM
G : 0.81	C : 0.06	U : 0.06	g : 0.04	A : 0.01	
A : 0.93	a : 0.04	G : 0.01	
A : 0.93	a : 0.04	U : 0.01	
G : 0.89	g : 0.04	A : 0.04	U : 0.01	
A : 0.79	G : 0.06	C : 0.06	a : 0.03	U : 0.03	g : 0.01	
U : 0.82	A : 0.07	u : 0.03	G : 0.03	a : 0.01	C : 0.01	
G : 0.76	U : 0.10	A : 0.04	g : 0.03	C : 0.03	u : 0.01	
A : 0.39	C : 0.32	U : 0.14	G : 0.09	a : 0.03	c : 0.01	
A : 0.35	C : 0.28	U : 0.26	a : 0.04	G : 0.04	

#score	866.28125
#seq	64
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_UTR_m1_run2.nuc.txt

#NT
AAUAAAA	chr11:93463198-93463471(-)$1	273	85	92	17.7307
AAUAAAA	chr12:69162124-69162408(+)$1	284	77	84	17.7307
AAUAAAC	chr2:170494208-170494444(+)$1	236	22	29	16.8974
AAUAAAC	chr12:110970834-110971147(-)$1	313	55	62	16.8974
AAUAAAA	chr1:23636139-23636365(-)$1	226	59	66	17.7307
AAUAAAG	chrX:41209359-41209629(+)$1	270	144	151	17.6025
AAUAAAA	chr17:38783789-38784056(-)$1	267	72	79	17.7307
AAUAAAC	chr6:7586727-7586955(+)$1	228	58	65	16.8974
AAUAAAC	chr5:52097794-52098116(+)$1	322	52	59	16.8974
AAUAAAG	chr11:62433089-62433355(+)$1	266	72	79	17.6025
AAUAAAG	chr1:115259315-115259615(-)$1	300	49	56	17.6025
AAUAAAA	chr4:99993143-99993398(-)$1	255	71	78	17.7307
AAUAAAA	chr5:122344802-122345107(+)$1	305	77	84	17.7307
AAUAAAA	chr10:21783244-21783514(-)$1	270	57	64	17.7307
AAUAAAG	chr5:72801236-72801523(+)$1	287	63	70	17.6025
AAUAAAG	chr2:160624988-160625255(+)$1	267	75	82	17.6025
AAUAAAG	chr4:159045555-159045837(-)$1	282	202	209	17.6025
aauaaag	chr9:21865879-21866154(+)$1	275	67	74	17.6025
AAUAAAU	chr2:223806846-223807081(+)$1	235	63	70	16.7692
AAUAAAA	chr2:128619332-128619604(-)$1	272	0	7	17.7307
AAUAAAC	chr20:30959944-30960213(+)$1	269	72	79	16.8974
AAUAAAG	chr2:178085986-178086242(+)$1	256	95	102	17.6025
aauaaau	chr5:134192288-134192581(+)$1	293	43	50	16.7692
AAUAAAG	chr21:27096594-27096956(-)$1	362	9	16	17.6025
aauaaaa	chr3:133497537-133497801(+)$1	264	69	76	17.7307
AAUAAAA	chr6:24172556-24172840(-)$1	284	70	77	17.7307
aauaaaa	chr16:8986460-8986723(-)$1	263	69	76	17.7307
AAUAAAC	chr4:1943477-1943823(+)$1	346	58	65	16.8974
AAUAAAC	chr3:39453823-39454104(+)$1	281	85	92	16.8974
AAUAAAA	chr16:75142550-75142808(+)$1	258	48	55	17.7307
aauaaaa	chr15:44088195-44088536(+)$1	341	41	48	17.7307
aauaaau	chr10:38117590-38117864(-)$1	274	150	157	16.7692
AAUAAAA	chr14:39651267-39651546(+)$1	279	30	37	17.7307
AAUAAAG	chr8:22280091-22280394(+)$1	303	77	84	17.6025
AAUAAAA	chr1:39471457-39471738(+)$1	281	80	87	17.7307
AAUAAAG	chr22:38691978-38692311(-)$1	333	80	87	17.6025
AAUAAAC	chr2:42936279-42936558(+)$1	279	50	57	16.8974
AAUAAAA	chr6:108191774-108192072(-)$1	298	76	83	17.7307
AAUAAAG	chr4:103717109-103717395(-)$1	286	81	88	17.6025
aauaaag	chr19:54081229-54081528(+)$1	299	83	90	17.6025
AAUAAAA	chr12:56989529-56989804(-)$1	275	64	71	17.7307
AAUAAAC	chr6:7586755-7587021(+)$1	266	30	37	16.8974
AAUAAAU	chr18:56063713-56064029(+)$1	316	72	79	16.7692
AAUAAAG	chr5:95222919-95223183(-)$1	264	55	62	17.6025
AAUAAAA	chr7:23349077-23349416(+)$1	339	80	87	17.7307
AAUAAAA	chr20:25280682-25280954(-)$1	272	84	91	17.7307
aauaaaa	chr7:64450532-64450842(-)$1	310	85	92	17.7307
AAUAAAU	chr1:24292721-24293031(-)$1	310	69	76	16.7692
AAUAAAC	chr17:56080722-56080958(-)$1	236	82	89	16.8974
AAUAAAG	chr2:39211636-39211915(-)$1	279	23	30	17.6025
AAUAAAC	chr12:133345475-133345742(-)$1	267	220	227	16.8974
AAUAAAA	chr2:38971785-38972133(-)$1	348	78	85	17.7307
aauaaau	chr10:70101934-70102219(+)$1	285	74	81	16.7692
AAUAAAG	chr11:57585813-57586055(+)$1	242	84	91	17.6025
AAUAAAG	chr17:66510874-66511201(+)$1	327	61	68	17.6025
AAUAAAG	chr20:62330702-62330967(-)$1	265	85	92	17.6025
AAUAAAG	chr22:31673270-31673521(+)$1	251	96	103	17.6025
AAUAAAG	chr3:150459645-150459956(-)$1	311	79	86	17.6025
AAUAAAA	chr2:235964180-235964456(+)$1	276	65	72	17.7307
AAUAAAG	chrX:131513347-131513610(-)$1	263	76	83	17.6025
AAUAAAU	chr9:19376080-19376343(-)$1	263	69	76	16.7692
AAUAAAU	chr4:83274791-83275077(-)$1	286	74	81	16.7692
AAUAAAU	chr19:5894526-5894793(-)$1	267	85	92	16.7692
AAUAAAA	chr4:74321445-74321688(+)$1	243	28	35	17.7307
AAUAAAG	chr2:208473644-208473939(-)$1	295	80	87	17.6025
AAUAAAA	chr17:39847812-39848106(+)$1	294	63	70	17.7307
AAUAAAA	chr4:6885008-6885302(+)$1	294	68	75	17.7307
AAUAAAG	chr3:129369197-129369490(-)$1	293	68	75	17.6025
aaUAAAC	chr20:391307-391563(+)$1	256	77	84	16.8974
AAUAAAA	chr2:179973851-179974124(-)$1	273	69	76	17.7307
AAUAAAA	chr2:8868816-8869095(-)$1	279	18	25	17.7307
AAUAAAC	chr2:198368013-198368287(+)$1	274	69	76	16.8974
AAUAAAU	chr2:171574413-171574679(+)$1	266	40	47	16.7692
aauaaau	chr20:48521124-48521456(-)$1	332	73	80	16.7692
AAUAAAU	chr12:133636088-133636388(+)$1	300	74	81	16.7692
AAUAAAG	chr3:191116145-191116399(+)$1	254	50	57	17.6025
aauaaac	chr12:58176265-58176562(+)$1	297	35	42	16.8974

#otherMatches

#Struct PSSM
::fffff	chr14:89696876-89697186(-)$1	310	92	99	17.6025
g&&&&&&	chr11:93463198-93463471(-)$1	273	85	92	17.7307
ccc7777	chr12:69162124-69162408(+)$1	284	77	84	17.7307
EEEQQQQ	chr2:170494208-170494444(+)$1	236	22	29	16.8974
gggg!!b	chr12:110970834-110971147(-)$1	313	55	62	16.8974
vvvvvvv	chr1:23636139-23636365(-)$1	226	59	66	17.7307
###eeee	chrX:41209359-41209629(+)$1	270	144	151	17.6025
CEEEEE:	chr17:38783789-38784056(-)$1	267	72	79	17.7307
e333fff	chr6:7586727-7586955(+)$1	228	58	65	16.8974
:::::::	chr5:52097794-52098116(+)$1	322	52	59	16.8974
NNNNNEE	chr11:62433089-62433355(+)$1	266	72	79	17.6025
::::::f	chr1:115259315-115259615(-)$1	300	49	56	17.6025
ee"""cc	chr4:99993143-99993398(-)$1	255	71	78	17.7307
fiiiiii	chr5:122344802-122345107(+)$1	305	77	84	17.7307
:::::::	chr10:21783244-21783514(-)$1	270	57	64	17.7307
sssssss	chr5:72801236-72801523(+)$1	287	63	70	17.6025
ddd]ddd	chr2:160624988-160625255(+)$1	267	75	82	17.6025
ZZGGGGG	chr4:159045555-159045837(-)$1	282	202	209	17.6025
::::::b	chr9:21865879-21866154(+)$1	275	67	74	17.6025
eeeee]e	chr2:223806846-223807081(+)$1	235	63	70	16.7692
:::::::	chr2:128619332-128619604(-)$1	272	0	7	17.7307
dd:::cc	chr20:30959944-30960213(+)$1	269	72	79	16.8974
tttttta	chr2:178085986-178086242(+)$1	256	95	102	17.6025
:::::::	chr5:134192288-134192581(+)$1	293	43	50	16.7692
LEEEEE{	chr21:27096594-27096956(-)$1	362	9	16	17.6025
eeeeggg	chr3:133497537-133497801(+)$1	264	69	76	17.7307
:::::::	chr6:24172556-24172840(-)$1	284	70	77	17.7307
pdddd]h	chr16:8986460-8986723(-)$1	263	69	76	17.7307
:::::::	chr4:1943477-1943823(+)$1	346	58	65	16.8974
rrrrrrf	chr3:39453823-39454104(+)$1	281	85	92	16.8974
eee22dd	chr16:75142550-75142808(+)$1	258	48	55	17.7307
::::::C	chr15:44088195-44088536(+)$1	341	41	48	17.7307
dddd333	chr10:38117590-38117864(-)$1	274	150	157	16.7692
::::iii	chr14:39651267-39651546(+)$1	279	30	37	17.7307
=======	chr8:22280091-22280394(+)$1	303	77	84	17.6025
iiiiuuu	chr1:39471457-39471738(+)$1	281	80	87	17.7307
::::::C	chr22:38691978-38692311(-)$1	333	80	87	17.6025
hhhhhhh	chr2:42936279-42936558(+)$1	279	50	57	16.8974
:::::::	chr6:108191774-108192072(-)$1	298	76	83	17.7307
4444ccc	chr4:103717109-103717395(-)$1	286	81	88	17.6025
dddd:cc	chr19:54081229-54081528(+)$1	299	83	90	17.6025
eeee:::	chr12:56989529-56989804(-)$1	275	64	71	17.7307
ff:::::	chr6:7586755-7587021(+)$1	266	30	37	16.8974
:::::::	chr18:56063713-56064029(+)$1	316	72	79	16.7692
hhhhhhh	chr5:95222919-95223183(-)$1	264	55	62	17.6025
pppppph	chr7:23349077-23349416(+)$1	339	80	87	17.7307
eeeee::	chr20:25280682-25280954(-)$1	272	84	91	17.7307
HHHHHHH	chr7:64450532-64450842(-)$1	310	85	92	17.7307
CC{EEEE	chr1:24292721-24293031(-)$1	310	69	76	16.7692
:::::::	chr17:56080722-56080958(-)$1	236	82	89	16.8974
ii"""ee	chr2:39211636-39211915(-)$1	279	23	30	17.6025
444ccc4	chr12:133345475-133345742(-)$1	267	220	227	16.8974
ee%%%%%	chr2:38971785-38972133(-)$1	348	78	85	17.7307
ffmmmmf	chr10:70101934-70102219(+)$1	285	74	81	16.7692
g"""ddd	chr11:57585813-57586055(+)$1	242	84	91	17.6025
EMMMMCC	chr17:66510874-66511201(+)$1	327	61	68	17.6025
::::::f	chr20:62330702-62330967(-)$1	265	85	92	17.6025
CCLLLII	chr22:31673270-31673521(+)$1	251	96	103	17.6025
==22ggg	chr3:150459645-150459956(-)$1	311	79	86	17.6025
vvvvvvv	chr2:235964180-235964456(+)$1	276	65	72	17.7307
+++++++	chrX:131513347-131513610(-)$1	263	76	83	17.6025
::::ddd	chr9:19376080-19376343(-)$1	263	69	76	16.7692
iiii::d	chr4:83274791-83275077(-)$1	286	74	81	16.7692
wwwwwgg	chr19:5894526-5894793(-)$1	267	85	92	16.7692
ffffvvv	chr4:74321445-74321688(+)$1	243	28	35	17.7307
9999999	chr2:208473644-208473939(-)$1	295	80	87	17.6025
hhhh:::	chr17:39847812-39848106(+)$1	294	63	70	17.7307
eeeeegg	chr4:6885008-6885302(+)$1	294	68	75	17.7307
iiiiiii	chr3:129369197-129369490(-)$1	293	68	75	17.6025
bb!!ccc	chr20:391307-391563(+)$1	256	77	84	16.8974
neeeee]	chr2:179973851-179974124(-)$1	273	69	76	17.7307
:::::::	chr2:8868816-8869095(-)$1	279	18	25	17.7307
:HHHHHH	chr2:198368013-198368287(+)$1	274	69	76	16.8974
qqqqqbb	chr2:171574413-171574679(+)$1	266	40	47	16.7692
ggggggg	chr20:48521124-48521456(-)$1	332	73	80	16.7692
ooooobb	chr12:133636088-133636388(+)$1	300	74	81	16.7692
iiiiiiq	chr3:191116145-191116399(+)$1	254	50	57	17.6025
:::::cc	chr12:58176265-58176562(+)$1	297	35	42	16.8974

#DB
..(((((	chr14:89696876-89697186(-)$1	1	92	99	17.6025
(......	chr11:93463198-93463471(-)$1	1	85	92	17.7307
)))....	chr12:69162124-69162408(+)$1	1	77	84	17.7307
(((....	chr2:170494208-170494444(+)$1	1	22	29	16.8974
((((..(	chr12:110970834-110971147(-)$1	1	55	62	16.8974
.......	chr1:23636139-23636365(-)$1	1	59	66	17.7307
...((((	chrX:41209359-41209629(+)$1	1	144	151	17.6025
((((((.	chr17:38783789-38784056(-)$1	1	72	79	17.7307
)...)))	chr6:7586727-7586955(+)$1	1	58	65	16.8974
.......	chr5:52097794-52098116(+)$1	1	52	59	16.8974
.....((	chr11:62433089-62433355(+)$1	1	72	79	17.6025
......(	chr1:115259315-115259615(-)$1	1	49	56	17.6025
((...((	chr4:99993143-99993398(-)$1	1	71	78	17.7307
)))))))	chr5:122344802-122345107(+)$1	1	77	84	17.7307
.......	chr10:21783244-21783514(-)$1	1	57	64	17.7307
.......	chr5:72801236-72801523(+)$1	1	63	70	17.6025
))).)))	chr2:160624988-160625255(+)$1	1	75	82	17.6025
..)))))	chr4:159045555-159045837(-)$1	1	202	209	17.6025
......(	chr9:21865879-21866154(+)$1	1	67	74	17.6025
))))).)	chr2:223806846-223807081(+)$1	1	63	70	16.7692
.......	chr2:128619332-128619604(-)$1	1	0	7	17.7307
))...((	chr20:30959944-30960213(+)$1	1	72	79	16.8974
......)	chr2:178085986-178086242(+)$1	1	95	102	17.6025
.......	chr5:134192288-134192581(+)$1	1	43	50	16.7692
.(((((.	chr21:27096594-27096956(-)$1	1	9	16	17.6025
(((((((	chr3:133497537-133497801(+)$1	1	69	76	17.7307
.......	chr6:24172556-24172840(-)$1	1	70	77	17.7307
.)))).)	chr16:8986460-8986723(-)$1	1	69	76	17.7307
.......	chr4:1943477-1943823(+)$1	1	58	65	16.8974
......)	chr3:39453823-39454104(+)$1	1	85	92	16.8974
)))..))	chr16:75142550-75142808(+)$1	1	48	55	17.7307
......(	chr15:44088195-44088536(+)$1	1	41	48	17.7307
))))...	chr10:38117590-38117864(-)$1	1	150	157	16.7692
....(((	chr14:39651267-39651546(+)$1	1	30	37	17.7307
)))))))	chr8:22280091-22280394(+)$1	1	77	84	17.6025
((((...	chr1:39471457-39471738(+)$1	1	80	87	17.7307
......(	chr22:38691978-38692311(-)$1	1	80	87	17.6025
)))))))	chr2:42936279-42936558(+)$1	1	50	57	16.8974
.......	chr6:108191774-108192072(-)$1	1	76	83	17.7307
....)))	chr4:103717109-103717395(-)$1	1	81	88	17.6025
)))).((	chr19:54081229-54081528(+)$1	1	83	90	17.6025
))))...	chr12:56989529-56989804(-)$1	1	64	71	17.7307
)).....	chr6:7586755-7587021(+)$1	1	30	37	16.8974
.......	chr18:56063713-56064029(+)$1	1	72	79	16.7692
(((((((	chr5:95222919-95223183(-)$1	1	55	62	17.6025
......)	chr7:23349077-23349416(+)$1	1	80	87	17.7307
)))))..	chr20:25280682-25280954(-)$1	1	84	91	17.7307
(((((((	chr7:64450532-64450842(-)$1	1	85	92	17.7307
((.((((	chr1:24292721-24293031(-)$1	1	69	76	16.7692
.......	chr17:56080722-56080958(-)$1	1	82	89	16.8974
((...((	chr2:39211636-39211915(-)$1	1	23	30	17.6025
...))).	chr12:133345475-133345742(-)$1	1	220	227	16.8974
((.....	chr2:38971785-38972133(-)$1	1	78	85	17.7307
((....)	chr10:70101934-70102219(+)$1	1	74	81	16.7692
(...(((	chr11:57585813-57586055(+)$1	1	84	91	17.6025
(....((	chr17:66510874-66511201(+)$1	1	61	68	17.6025
......(	chr20:62330702-62330967(-)$1	1	85	92	17.6025
((...((	chr22:31673270-31673521(+)$1	1	96	103	17.6025
))..)))	chr3:150459645-150459956(-)$1	1	79	86	17.6025
.......	chr2:235964180-235964456(+)$1	1	65	72	17.7307
.......	chrX:131513347-131513610(-)$1	1	76	83	17.6025
....(((	chr9:19376080-19376343(-)$1	1	69	76	16.7692
))))..(	chr4:83274791-83275077(-)$1	1	74	81	16.7692
.....))	chr19:5894526-5894793(-)$1	1	85	92	16.7692
((((...	chr4:74321445-74321688(+)$1	1	28	35	17.7307
.......	chr2:208473644-208473939(-)$1	1	80	87	17.6025
))))...	chr17:39847812-39848106(+)$1	1	63	70	17.7307
(((((((	chr4:6885008-6885302(+)$1	1	68	75	17.7307
)))))))	chr3:129369197-129369490(-)$1	1	68	75	17.6025
((..(((	chr20:391307-391563(+)$1	1	77	84	16.8974
.))))).	chr2:179973851-179974124(-)$1	1	69	76	17.7307
.......	chr2:8868816-8869095(-)$1	1	18	25	17.7307
.((((((	chr2:198368013-198368287(+)$1	1	69	76	16.8974
.....))	chr2:171574413-171574679(+)$1	1	40	47	16.7692
)))))))	chr20:48521124-48521456(-)$1	1	73	80	16.7692
.....))	chr12:133636088-133636388(+)$1	1	74	81	16.7692
((((((.	chr3:191116145-191116399(+)$1	1	50	57	17.6025
.....((	chr12:58176265-58176562(+)$1	1	35	42	16.8974

#PSSM
A : 0.83	a : 0.16	
A : 0.83	a : 0.16	
U : 0.84	u : 0.15	
A : 0.84	a : 0.15	
A : 0.84	a : 0.15	
A : 0.84	a : 0.15	
A : 0.29	G : 0.28	C : 0.16	U : 0.10	u : 0.05	a : 0.05	g : 0.03	c : 0.01	

#score	1356.589743589742
#seq	78
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_UTR_m2_run1.nuc.txt

#NT
ACUGU	chr18:47017966-47018187(-)$1	221	189	194	14.9999
ACUGU	chr20:23614428-23614687(-)$1	259	9	14	14.9999
ACUGU	chr3:96336251-96336454(-)$1	203	122	127	14.9999
ACUGU	chr17:64224115-64224331(-)$1	216	162	167	14.9999
ACUGU	chr6:31804750-31804954(+)$1	204	30	35	14.9999
ACUGU	chr6:31802966-31803176(+)$1	210	8	13	14.9999
ACUGU	chr18:47017987-47018192(-)$1	205	194	199	14.9999
ACUGU	chr18:47017954-47018166(-)$1	212	168	173	14.9999
ACUGU	chr3:96336254-96336458(-)$1	204	126	131	14.9999
ACUGU	chr3:96336291-96336499(-)$1	208	167	172	14.9999
ACUGU	chr18:47017935-47018151(-)$1	216	153	158	14.9999
ACUGU	chr11:75111380-75111614(+)$1	234	41	46	14.9999
ACUGU	chr11:122929568-122929786(-)$1	218	196	201	14.9999
ACUGU	chr6:31804777-31804981(+)$1	204	3	8	14.9999
ACUGU	chr11:75111376-75111580(+)$1	204	45	50	14.9999
ACUGU	chr11:75111334-75111576(+)$1	242	87	92	14.9999
ACUGU	chr11:68201145-68201387(+)$1	242	125	130	14.9999
ACUGU	chr3:96336267-96336491(-)$1	224	159	164	14.9999
ACUGU	chr3:96336128-96336392(-)$1	264	60	65	14.9999
ACUGU	chr3:96336258-96336467(-)$1	209	135	140	14.9999
ACUGU	chr6:31804756-31804977(+)$1	221	24	29	14.9999
ACUGU	chr6:31802963-31803166(+)$1	203	11	16	14.9999

#otherMatches

#Struct PSSM
:::::	chr18:47017992-47018199(-)$1	207	201	206	14.9999
DDDDY	chr18:47017966-47018187(-)$1	221	189	194	14.9999
[ccc+	chr20:23614428-23614687(-)$1	259	9	14	14.9999
^gggg	chr3:96336251-96336454(-)$1	203	122	127	14.9999
ddhhh	chr17:64224115-64224331(-)$1	216	162	167	14.9999
eeooo	chr6:31804750-31804954(+)$1	204	30	35	14.9999
EGGGG	chr6:31802966-31803176(+)$1	210	8	13	14.9999
c]hhh	chr18:47017987-47018192(-)$1	205	194	199	14.9999
c]hhh	chr18:47017954-47018166(-)$1	212	168	173	14.9999
^gggg	chr3:96336254-96336458(-)$1	204	126	131	14.9999
^gggg	chr3:96336291-96336499(-)$1	208	167	172	14.9999
c]hhh	chr18:47017935-47018151(-)$1	216	153	158	14.9999
=====	chr11:75111380-75111614(+)$1	234	41	46	14.9999
!cccl	chr11:122929568-122929786(-)$1	218	196	201	14.9999
dccc!	chr6:31804777-31804981(+)$1	204	3	8	14.9999
=====	chr11:75111376-75111580(+)$1	204	45	50	14.9999
=====	chr11:75111334-75111576(+)$1	242	87	92	14.9999
ggggg	chr11:68201145-68201387(+)$1	242	125	130	14.9999
^gggg	chr3:96336267-96336491(-)$1	224	159	164	14.9999
:GGGG	chr3:96336128-96336392(-)$1	264	60	65	14.9999
^gggg	chr3:96336258-96336467(-)$1	209	135	140	14.9999
eeooo	chr6:31804756-31804977(+)$1	221	24	29	14.9999
:GGGG	chr6:31802963-31803166(+)$1	203	11	16	14.9999

#DB
.....	chr18:47017992-47018199(-)$1	1	201	206	14.9999
)))).	chr18:47017966-47018187(-)$1	1	189	194	14.9999
.(((.	chr20:23614428-23614687(-)$1	1	9	14	14.9999
.))))	chr3:96336251-96336454(-)$1	1	122	127	14.9999
)))))	chr17:64224115-64224331(-)$1	1	162	167	14.9999
((...	chr6:31804750-31804954(+)$1	1	30	35	14.9999
(((((	chr6:31802966-31803176(+)$1	1	8	13	14.9999
).)))	chr18:47017987-47018192(-)$1	1	194	199	14.9999
).)))	chr18:47017954-47018166(-)$1	1	168	173	14.9999
.))))	chr3:96336254-96336458(-)$1	1	126	131	14.9999
.))))	chr3:96336291-96336499(-)$1	1	167	172	14.9999
).)))	chr18:47017935-47018151(-)$1	1	153	158	14.9999
)))))	chr11:75111380-75111614(+)$1	1	41	46	14.9999
.(((.	chr11:122929568-122929786(-)$1	1	196	201	14.9999
((((.	chr6:31804777-31804981(+)$1	1	3	8	14.9999
)))))	chr11:75111376-75111580(+)$1	1	45	50	14.9999
)))))	chr11:75111334-75111576(+)$1	1	87	92	14.9999
(((((	chr11:68201145-68201387(+)$1	1	125	130	14.9999
.))))	chr3:96336267-96336491(-)$1	1	159	164	14.9999
.((((	chr3:96336128-96336392(-)$1	1	60	65	14.9999
.))))	chr3:96336258-96336467(-)$1	1	135	140	14.9999
((...	chr6:31804756-31804977(+)$1	1	24	29	14.9999
.((((	chr6:31802963-31803166(+)$1	1	11	16	14.9999

#PSSM
A : 0.99	
C : 0.99	
U : 0.99	
G : 0.99	
U : 0.99	

#score	344.99999999999994
#seq	23
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_UTR_m3_run1.nuc.txt

#NT
UGUGUCUGUGUG	chr1:27671468-27671781(+)$1	313	45	57	25.4000
ugugugagugug	chr5:1222027-1222310(+)$1	283	107	119	24.7000
UGUGUGUGUGUG	chr13:99104177-99104460(-)$1	283	130	142	29.0000
ugugugugugug	chr9:34087792-34088030(-)$1	238	133	145	29.0000
UGUGUGUGUAUG	chr3:15483615-15483882(+)$1	267	17	29	24.7000
UGUGAGUGAGUG	chr2:87004399-87004694(+)$1	295	131	143	21.4000
UGUCUGUCUGUG	chr2:37072185-37072451(-)$1	266	116	128	21.1000
UGUGUGUGUGUG	chr7:133976512-133976817(-)$1	305	91	103	29.0000
GGUGUGUGUGGG	chr10:18965913-18966181(+)$1	268	46	58	20.4000
UGUCUGUGUGUG	chr10:102758431-102758705(+)$1	274	179	191	25.4000
UGUGUCUGGGUG	chr11:65764083-65764371(-)$1	288	41	53	22.1000
ugucuaugugug	chr22:21802026-21802233(+)$1	207	73	85	22.1000
UGUGUGUCCGUG	chr1:47697170-47697432(-)$1	262	189	201	21.5000
UGUGCGUGUGUG	chr17:38438580-38438855(+)$1	275	133	145	24.5000
UGUGUGUGUGUG	chr1:224573497-224573794(-)$1	297	98	110	29.0000
ugugugugugug	chr16:89980873-89981106(+)$1	233	81	93	29.0000
UGUGUAUGUGUG	chr17:42283703-42283981(-)$1	278	120	132	25.7000
UGUGAGUAUGUG	chr2:118867069-118867396(+)$1	327	100	112	20.5000
UGUGAGUGUGUG	chr1:92146202-92146454(-)$1	252	101	113	24.7000
UGUGUGUGUGUG	chr1:36180899-36181171(-)$1	272	190	202	29.0000
UUUGUAUGUGUG	chr12:53806747-53807018(+)$1	271	97	109	21.0000
UGUUUGUGAGUG	chr1:44445666-44445923(+)$1	257	47	59	21.6000
UGUGUGUGUGUU	chr5:180236667-180236930(-)$1	263	135	147	24.6000
uguguauaugug	chr5:1222595-1222850(+)$1	255	27	39	21.5000
UGUGUGUGGGUG	chr17:37076018-37076281(+)$1	263	161	173	25.7000
UGUAUUugugug	chr9:139099088-139099337(-)$1	249	74	86	21.2000
ugugugugugug	chr4:2069745-2070056(+)$1	311	110	122	29.0000
AGUCUGUGUGUG	chr7:133977909-133978182(-)$1	273	120	132	21.4000
uguguuugucug	chr2:97525870-97526169(-)$1	299	92	104	21.0000
ugugugugcgug	chr12:56991224-56991466(-)$1	242	112	124	25.8000
ugugucuguguu	chr16:29001674-29001936(+)$1	262	88	100	21.0000
ugucugagugug	chr2:172289485-172289779(-)$1	294	116	128	21.1000
UGUGUGUGCGUG	chr6:157713622-157713875(-)$1	253	103	115	25.8000
GGUGUGUGUGUC	chr4:1947012-1947291(+)$1	279	103	115	20.6000
ugcgugugcgug	chr11:47346441-47346727(+)$1	286	107	119	21.4000
UGGGUGUGUUUG	chr6:36063810-36064169(+)$1	359	109	121	20.3000
UGUGUGUGUCUA	chr1:44443118-44443418(+)$1	300	208	220	20.2000
UGUGUGAGAGUG	chr8:21862926-21863240(+)$1	314	176	188	21.4000
GGUGUAUGUGUG	chr6:17615718-17615930(-)$1	212	66	78	21.8000
UGUGUGCGUGCG	chr4:1809023-1809322(+)$1	299	139	151	19.8000
UGUGUGUGUGUG	chr11:119170749-119171048(+)$1	299	105	117	29.0000
AGUGUGUAUGUG	chr1:114517466-114517729(+)$1	263	31	43	20.8000
UGAGUGUGUAUG	chr1:36180971-36181242(-)$1	271	113	125	20.4000
GGUGUGUGGGUG	chr2:9628630-9628900(-)$1	270	105	117	21.8000
UGGGUGUGGGUG	chr6:34556521-34556770(-)$1	249	42	54	21.4000
AGAGUGUGUGUG	chr11:64073912-64074149(+)$1	237	76	88	20.7000
uaugugugcgug	chr17:76101595-76101930(+)$1	335	97	109	21.1000
UGUGUGUGUGUG	chr6:34555373-34555710(-)$1	337	121	133	29.0000
uguguaugagug	chr1:206906523-206906825(+)$1	302	134	146	22.4000

#otherMatches

#Struct PSSM
ii::eeeeemmm	chr22:21801348-21801587(+)$1	239	75	87	25.4000
iiia[ddddccc	chr1:27671468-27671781(+)$1	313	45	57	25.4000
]bbbb!!iiiii	chr5:1222027-1222310(+)$1	283	107	119	24.7000
FFFFFF}DDDD~	chr13:99104177-99104460(-)$1	283	130	142	29.0000
CC}AEEEEEeee	chr9:34087792-34088030(-)$1	238	133	145	29.0000
::::::::::::	chr3:15483615-15483882(+)$1	267	17	29	24.7000
ccbb[eeeee##	chr2:87004399-87004694(+)$1	295	131	143	21.4000
hEEEEE~~~~JJ	chr2:37072185-37072451(-)$1	266	116	128	21.1000
[ddddooooood	chr7:133976512-133976817(-)$1	305	91	103	29.0000
i:eeeee[dddd	chr10:18965913-18966181(+)$1	268	46	58	20.4000
YCCCZZZBB}A}	chr10:102758431-102758705(+)$1	274	179	191	25.4000
KCCC:::CCC{E	chr11:65764083-65764371(-)$1	288	41	53	22.1000
7777777a]ccc	chr22:21802026-21802233(+)$1	207	73	85	22.1000
nnnnnddddbb[	chr1:47697170-47697432(-)$1	262	189	201	21.5000
===GGGGGGG__	chr17:38438580-38438855(+)$1	275	133	145	24.5000
JJJJLLLDDDD:	chr1:224573497-224573794(-)$1	297	98	110	29.0000
QQQQQQQJJJJJ	chr16:89980873-89981106(+)$1	233	81	93	29.0000
c333bb333a]e	chr17:42283703-42283981(-)$1	278	120	132	25.7000
"""ggggggg""	chr2:118867069-118867396(+)$1	327	100	112	20.5000
JJKKCCCiiiii	chr1:92146202-92146454(-)$1	252	101	113	24.7000
fdddd]ccc]ff	chr1:36180899-36181171(-)$1	272	190	202	29.0000
$$$$========	chr12:53806747-53807018(+)$1	271	97	109	21.0000
:::::dddd!!d	chr1:44445666-44445923(+)$1	257	47	59	21.6000
iiiiiii]hhhh	chr5:180236667-180236930(-)$1	263	135	147	24.6000
FFFggggggg""	chr5:1222595-1222850(+)$1	255	27	39	21.5000
b"""gggggggd	chr17:37076018-37076281(+)$1	263	161	173	25.7000
e:::::ccc[cc	chr9:139099088-139099337(-)$1	249	74	86	21.2000
GGGG:::dddd[	chr4:2069745-2070056(+)$1	311	110	122	29.0000
ggcccbb!!ddd	chr7:133977909-133978182(-)$1	273	120	132	21.4000
fffffuuuuuuu	chr2:97525870-97526169(-)$1	299	92	104	21.0000
[ccc"""bbggg	chr12:56991224-56991466(-)$1	242	112	124	25.8000
FYYAZZZDDDD}	chr16:29001674-29001936(+)$1	262	88	100	21.0000
]eeeeea]bb]b	chr2:172289485-172289779(-)$1	294	116	128	21.1000
44bb]dddd::d	chr6:157713622-157713875(-)$1	253	103	115	25.8000
ccrrrrrrrrrc	chr4:1947012-1947291(+)$1	279	103	115	20.6000
qqqqqqqbbhhh	chr11:47346441-47346727(+)$1	286	107	119	21.4000
eeee"""ccc##	chr6:36063810-36064169(+)$1	359	109	121	20.3000
sccc]eeeee44	chr1:44443118-44443418(+)$1	300	208	220	20.2000
hhhhhuuuuuuu	chr8:21862926-21863240(+)$1	314	176	188	21.4000
c::GGGGGGGNN	chr6:17615718-17615930(-)$1	212	66	78	21.8000
f[eeeee[bb[c	chr4:1809023-1809322(+)$1	299	139	151	19.8000
LLEEEEELLLA{	chr11:119170749-119171048(+)$1	299	105	117	29.0000
EEEKKFFFFFFK	chr1:114517466-114517729(+)$1	263	31	43	20.8000
mmmmccc]ccc]	chr1:36180971-36181242(-)$1	271	113	125	20.4000
fffff22aFFFF	chr2:9628630-9628900(-)$1	270	105	117	21.8000
fff::::dddd[	chr6:34556521-34556770(-)$1	249	42	54	21.4000
eeeee8888888	chr11:64073912-64074149(+)$1	237	76	88	20.7000
33gggggggggg	chr17:76101595-76101930(+)$1	335	97	109	21.1000
============	chr6:34555373-34555710(-)$1	337	121	133	29.0000
2dddd]ddddee	chr1:206906523-206906825(+)$1	302	134	146	22.4000

#DB
))..(((((...	chr22:21801348-21801587(+)$1	1	75	87	25.4000
)))(.(((((((	chr1:27671468-27671781(+)$1	1	45	57	25.4000
.))((..(((((	chr5:1222027-1222310(+)$1	1	107	119	24.7000
)))))).)))).	chr13:99104177-99104460(-)$1	1	130	142	29.0000
)).))))))(((	chr9:34087792-34088030(-)$1	1	133	145	29.0000
............	chr3:15483615-15483882(+)$1	1	17	29	24.7000
((((.(((((..	chr2:87004399-87004694(+)$1	1	131	143	21.4000
))))))....))	chr2:37072185-37072451(-)$1	1	116	128	21.1000
.((((......)	chr7:133976512-133976817(-)$1	1	91	103	29.0000
).(((((.((((	chr10:18965913-18966181(+)$1	1	46	58	20.4000
.)))...)).).	chr10:102758431-102758705(+)$1	1	179	191	25.4000
.(((...(((.(	chr11:65764083-65764371(-)$1	1	41	53	22.1000
.......).)))	chr22:21802026-21802233(+)$1	1	73	85	22.1000
.....))))((.	chr1:47697170-47697432(-)$1	1	189	201	21.5000
))))))))))..	chr17:38438580-38438855(+)$1	1	133	145	24.5000
((((...((((.	chr1:224573497-224573794(-)$1	1	98	110	29.0000
.......(((((	chr16:89980873-89981106(+)$1	1	81	93	29.0000
)...))...).)	chr17:42283703-42283981(-)$1	1	120	132	25.7000
...(((((((..	chr2:118867069-118867396(+)$1	1	100	112	20.5000
((..((((((((	chr1:92146202-92146454(-)$1	1	101	113	24.7000
))))).))).))	chr1:36180899-36181171(-)$1	1	190	202	29.0000
....((((((((	chr12:53806747-53807018(+)$1	1	97	109	21.0000
.....((((..(	chr1:44445666-44445923(+)$1	1	47	59	21.6000
))))))).))))	chr5:180236667-180236930(-)$1	1	135	147	24.6000
((((((((((..	chr5:1222595-1222850(+)$1	1	27	39	21.5000
(...((((((((	chr17:37076018-37076281(+)$1	1	161	173	25.7000
).....(((.((	chr9:139099088-139099337(-)$1	1	74	86	21.2000
((((...((((.	chr4:2069745-2070056(+)$1	1	110	122	29.0000
(((((((..(((	chr7:133977909-133978182(-)$1	1	120	132	21.4000
(((((.......	chr2:97525870-97526169(-)$1	1	92	104	21.0000
.(((...(((((	chr12:56991224-56991466(-)$1	1	112	124	25.8000
)..)...)))).	chr16:29001674-29001936(+)$1	1	88	100	21.0000
.)))))).)).)	chr2:172289485-172289779(-)$1	1	116	128	21.1000
..)).))))..(	chr6:157713622-157713875(-)$1	1	103	115	25.8000
((.........)	chr4:1947012-1947291(+)$1	1	103	115	20.6000
.......)))))	chr11:47346441-47346727(+)$1	1	107	119	21.4000
((((...(((..	chr6:36063810-36064169(+)$1	1	109	121	20.3000
.))).)))))..	chr1:44443118-44443418(+)$1	1	208	220	20.2000
(((((.......	chr8:21862926-21863240(+)$1	1	176	188	21.4000
)..(((((((..	chr6:17615718-17615930(-)$1	1	66	78	21.8000
(.(((((.((.(	chr4:1809023-1809322(+)$1	1	139	151	19.8000
..(((((...(.	chr11:119170749-119171048(+)$1	1	105	117	29.0000
(((..((((((.	chr1:114517466-114517729(+)$1	1	31	43	20.8000
....))).))).	chr1:36180971-36181242(-)$1	1	113	125	20.4000
)))))..)((((	chr2:9628630-9628900(-)$1	1	105	117	21.8000
)))....((((.	chr6:34556521-34556770(-)$1	1	42	54	21.4000
))))).......	chr11:64073912-64074149(+)$1	1	76	88	20.7000
..))))))))))	chr17:76101595-76101930(+)$1	1	97	109	21.1000
((((((((((((	chr6:34555373-34555710(-)$1	1	121	133	29.0000
.)))).))))((	chr1:206906523-206906825(+)$1	1	134	146	22.4000

#PSSM
U : 0.60	u : 0.25	G : 0.08	A : 0.06	
G : 0.72	g : 0.23	U : 0.02	a : 0.02	
U : 0.66	u : 0.23	G : 0.04	A : 0.04	c : 0.02	
G : 0.62	g : 0.21	C : 0.08	c : 0.04	U : 0.02	A : 0.02	
U : 0.66	u : 0.25	A : 0.06	C : 0.02	
G : 0.62	g : 0.16	a : 0.06	A : 0.06	C : 0.04	U : 0.02	u : 0.02	c : 0.02	
U : 0.68	u : 0.23	a : 0.04	A : 0.02	C : 0.02	
G : 0.64	g : 0.25	C : 0.04	A : 0.04	a : 0.02	
U : 0.54	u : 0.19	G : 0.08	A : 0.06	c : 0.06	C : 0.04	a : 0.02	
G : 0.64	g : 0.25	A : 0.04	c : 0.02	U : 0.02	C : 0.02	
U : 0.68	u : 0.27	G : 0.02	C : 0.02	
G : 0.66	g : 0.25	U : 0.02	u : 0.02	C : 0.02	A : 0.02	

#score	1176.4000000000015
#seq	50
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_transcript_m2_run1.nuc.txt

#NT
CUG	chr12:104335153-104335386(+)$1	233	68	71	8.9999
CUG	chr5:135382382-135382712(+)$1	330	24	27	8.9999
CUG	chr17:73227860-73228169(+)$1	309	39	42	8.9999
CUG	chr2:27656191-27656452(+)$1	261	22	25	8.9999
CUG	chr12:26834768-26835029(-)$1	261	70	73	8.9999
CUG	chr12:112460231-112460520(+)$1	289	45	48	8.9999
CUG	chr11:2979529-2979799(-)$1	270	1	4	8.9999
CUG	chr19:57325784-57326069(-)$1	285	16	19	8.9999
CUG	chr12:76449711-76449916(-)$1	205	48	51	8.9999
CUG	chr2:85553534-85553791(-)$1	257	60	63	8.9999
CUG	chr2:27656448-27656709(+)$1	261	130	133	8.9999
CUG	chr5:145849006-145849328(+)$1	322	169	172	8.9999
CUG	chr12:104341355-104341587(+)$1	232	10	13	8.9999
CUG	chr17:78617432-78617700(+)$1	268	23	26	8.9999
CUG	chr3:184096338-184096630(+)$1	292	8	11	8.9999
CUG	chr2:62934303-62934530(+)$1	227	14	17	8.9999
CUG	chrY:2713587-2713804(+)$1	217	16	19	8.9999
CUG	chr2:232325088-232325294(-)$1	206	22	25	8.9999
cug	chr10:101556161-101556389(+)$1	228	22	25	8.9999
CUG	chr20:34326789-34326992(-)$1	203	45	48	8.9999
CUG	chr12:56744527-56744772(-)$1	245	101	104	8.9999
CUG	chrX:76888593-76888919(-)$1	326	51	54	8.9999
CUG	chr7:73019989-73020198(-)$1	209	31	34	8.9999
cug	chr17:79564172-79564441(-)$1	269	13	16	8.9999
CUG	chr16:15128082-15128337(+)$1	255	5	8	8.9999
CUG	chr4:3134459-3134738(+)$1	279	7	10	8.9999
CUG	chr2:242206154-242206372(-)$1	218	27	30	8.9999
CUG	chr16:23499824-23500126(-)$1	302	31	34	8.9999
CUG	chr7:73020169-73020392(-)$1	223	17	20	8.9999
cug	chr2:188380266-188380557(+)$1	291	12	15	8.9999
CUG	chr6:7581196-7581452(+)$1	256	6	9	8.9999
CUG	chr7:1024495-1024740(+)$1	245	1	4	8.9999
CUG	chr17:62515342-62515643(+)$1	301	13	16	8.9999
CUG	chr15:93467495-93467795(+)$1	300	66	69	8.9999
CUG	chr6:26055960-26056203(-)$1	243	40	43	8.9999
CUG	chr2:120861538-120861923(+)$1	385	65	68	8.9999
CUG	chr2:11348357-11348658(-)$1	301	151	154	8.9999
CUG	chr22:38016144-38016407(+)$1	263	11	14	8.9999
CUG	chr9:116930530-116930781(+)$1	251	20	23	8.9999
CUG	chr3:15093903-15094217(-)$1	314	8	11	8.9999
cUG	chr1:1334459-1334704(-)$1	245	40	43	8.9999
CUG	chr1:8568596-8568835(-)$1	239	61	64	8.9999
CUG	chr20:60714835-60715061(-)$1	226	8	11	8.9999
CUG	chr19:48981593-48981885(+)$1	292	22	25	8.9999
CUG	chr14:105911662-105911940(+)$1	278	30	33	8.9999
CUG	chr2:166747250-166747559(-)$1	309	39	42	8.9999
CUG	chr14:31405604-31405901(-)$1	297	76	79	8.9999
CUG	chr11:373127-373379(+)$1	252	40	43	8.9999
CUG	chr20:43043164-43043401(+)$1	237	72	75	8.9999
CUG	chr1:70716268-70716537(+)$1	269	131	134	8.9999
CUG	chr2:71592618-71592924(+)$1	306	18	21	8.9999
CUG	chr20:3185082-3185284(-)$1	202	21	24	8.9999
CUG	chr20:57268732-57268977(+)$1	245	4	7	8.9999
CUG	chr12:6692356-6692593(-)$1	237	6	9	8.9999
CUG	chr1:17953759-17954034(+)$1	275	11	14	8.9999
CUG	chr1:169500093-169500344(-)$1	251	18	21	8.9999
CUG	chr16:18845527-18845818(-)$1	291	33	36	8.9999
CUG	chr16:50659375-50659598(+)$1	223	10	13	8.9999
CUG	chr16:74908200-74908442(-)$1	242	24	27	8.9999
CUG	chr9:139693968-139694223(+)$1	255	60	63	8.9999
CUG	chr2:242178992-242179258(-)$1	266	47	50	8.9999
CUG	chr10:79800282-79800495(+)$1	213	107	110	8.9999
CUG	chr6:145021229-145021476(+)$1	247	13	16	8.9999
CUG	chr14:70233829-70234075(+)$1	246	18	21	8.9999
CUG	chr19:1422244-1422508(+)$1	264	2	5	8.9999
CUG	chr2:242187379-242187630(-)$1	251	210	213	8.9999
CUG	chr20:21142724-21143042(+)$1	318	43	46	8.9999
CUG	chr4:24585843-24586155(-)$1	312	0	3	8.9999
CUG	chr22:36716742-36716974(-)$1	232	104	107	8.9999
CUG	chr17:73900521-73900841(-)$1	320	2	5	8.9999
cug	chr15:60694887-60695166(-)$1	279	132	135	8.9999
CUG	chr9:134307988-134308266(+)$1	278	224	227	8.9999
CUG	chr17:74059953-74060255(-)$1	302	13	16	8.9999
CUG	chr2:27424579-27424815(-)$1	236	5	8	8.9999
CUG	chr10:105372769-105373050(-)$1	281	14	17	8.9999
CUG	chr11:66391653-66391996(+)$1	343	12	15	8.9999
CUG	chr7:99935712-99935987(+)$1	275	160	163	8.9999
CUG	chr5:75896561-75896849(+)$1	288	106	109	8.9999
CUG	chr17:7126392-7126656(+)$1	264	128	131	8.9999
CUG	chr2:9770369-9770667(-)$1	298	22	25	8.9999
CUG	chr16:16286581-16286819(-)$1	238	13	16	8.9999
CUG	chr16:28844281-28844488(+)$1	207	60	63	8.9999
CUG	chr12:69644898-69645210(+)$1	312	14	17	8.9999
CUG	chr7:2400244-2400497(+)$1	253	105	108	8.9999
CUG	chr20:17640781-17641007(-)$1	226	105	108	8.9999
CUG	chr2:232324856-232325099(-)$1	243	9	12	8.9999
CUG	chr4:184129035-184129315(+)$1	280	142	145	8.9999
CUG	chr2:242195938-242196184(-)$1	246	29	32	8.9999
CUG	chr1:23346094-23346407(+)$1	313	2	5	8.9999
CUG	chr9:127623671-127623927(-)$1	256	26	29	8.9999
CUG	chr17:47075085-47075380(+)$1	295	3	6	8.9999
CUG	chr19:55752659-55752929(-)$1	270	5	8	8.9999
CUG	chr17:37360759-37360983(+)$1	224	10	13	8.9999
CUG	chr2:178257529-178257836(+)$1	307	19	22	8.9999
CUG	chr10:19640846-19641105(+)$1	259	185	188	8.9999
CUG	chr16:840832-841136(+)$1	304	4	7	8.9999
CUG	chr7:72891616-72891932(-)$1	316	3	6	8.9999
CUG	chr4:74124320-74124609(-)$1	289	66	69	8.9999

#otherMatches

#Struct PSSM
EEK	chr2:11751005-11751248(+)$1	243	6	9	8.9999
CCC	chr12:104335153-104335386(+)$1	233	68	71	8.9999
GGJ	chr5:135382382-135382712(+)$1	330	24	27	8.9999
bbd	chr17:73227860-73228169(+)$1	309	39	42	8.9999
llb	chr2:27656191-27656452(+)$1	261	22	25	8.9999
+++	chr12:26834768-26835029(-)$1	261	70	73	8.9999
DDD	chr12:112460231-112460520(+)$1	289	45	48	8.9999
GGG	chr11:2979529-2979799(-)$1	270	1	4	8.9999
ggg	chr19:57325784-57326069(-)$1	285	16	19	8.9999
:::	chr12:76449711-76449916(-)$1	205	48	51	8.9999
""d	chr2:85553534-85553791(-)$1	257	60	63	8.9999
eee	chr2:27656448-27656709(+)$1	261	130	133	8.9999
EEE	chr5:145849006-145849328(+)$1	322	169	172	8.9999
JJJ	chr12:104341355-104341587(+)$1	232	10	13	8.9999
EEE	chr17:78617432-78617700(+)$1	268	23	26	8.9999
eee	chr3:184096338-184096630(+)$1	292	8	11	8.9999
fff	chr2:62934303-62934530(+)$1	227	14	17	8.9999
eee	chrY:2713587-2713804(+)$1	217	16	19	8.9999
CC{	chr2:232325088-232325294(-)$1	206	22	25	8.9999
qqa	chr10:101556161-101556389(+)$1	228	22	25	8.9999
DD{	chr20:34326789-34326992(-)$1	203	45	48	8.9999
mmm	chr12:56744527-56744772(-)$1	245	101	104	8.9999
===	chrX:76888593-76888919(-)$1	326	51	54	8.9999
hhh	chr7:73019989-73020198(-)$1	209	31	34	8.9999
III	chr17:79564172-79564441(-)$1	269	13	16	8.9999
III	chr16:15128082-15128337(+)$1	255	5	8	8.9999
::D	chr4:3134459-3134738(+)$1	279	7	10	8.9999
ddd	chr2:242206154-242206372(-)$1	218	27	30	8.9999
eee	chr16:23499824-23500126(-)$1	302	31	34	8.9999
rrr	chr7:73020169-73020392(-)$1	223	17	20	8.9999
KKE	chr2:188380266-188380557(+)$1	291	12	15	8.9999
FFF	chr6:7581196-7581452(+)$1	256	6	9	8.9999
:HH	chr7:1024495-1024740(+)$1	245	1	4	8.9999
KKD	chr17:62515342-62515643(+)$1	301	13	16	8.9999
ddd	chr15:93467495-93467795(+)$1	300	66	69	8.9999
ggt	chr6:26055960-26056203(-)$1	243	40	43	8.9999
:GG	chr2:120861538-120861923(+)$1	385	65	68	8.9999
c22	chr2:11348357-11348658(-)$1	301	151	154	8.9999
fff	chr22:38016144-38016407(+)$1	263	11	14	8.9999
sss	chr9:116930530-116930781(+)$1	251	20	23	8.9999
EEE	chr3:15093903-15094217(-)$1	314	8	11	8.9999
fff	chr1:1334459-1334704(-)$1	245	40	43	8.9999
dCC	chr1:8568596-8568835(-)$1	239	61	64	8.9999
LEE	chr20:60714835-60715061(-)$1	226	8	11	8.9999
+++	chr19:48981593-48981885(+)$1	292	22	25	8.9999
mmc	chr14:105911662-105911940(+)$1	278	30	33	8.9999
CBB	chr2:166747250-166747559(-)$1	309	39	42	8.9999
ddd	chr14:31405604-31405901(-)$1	297	76	79	8.9999
fff	chr11:373127-373379(+)$1	252	40	43	8.9999
bbD	chr20:43043164-43043401(+)$1	237	72	75	8.9999
dd]	chr1:70716268-70716537(+)$1	269	131	134	8.9999
ddd	chr2:71592618-71592924(+)$1	306	18	21	8.9999
[ee	chr20:3185082-3185284(-)$1	202	21	24	8.9999
::f	chr20:57268732-57268977(+)$1	245	4	7	8.9999
ggg	chr12:6692356-6692593(-)$1	237	6	9	8.9999
KKG	chr1:17953759-17954034(+)$1	275	11	14	8.9999
ccd	chr1:169500093-169500344(-)$1	251	18	21	8.9999
EEE	chr16:18845527-18845818(-)$1	291	33	36	8.9999
:::	chr16:50659375-50659598(+)$1	223	10	13	8.9999
ggd	chr16:74908200-74908442(-)$1	242	24	27	8.9999
hhh	chr9:139693968-139694223(+)$1	255	60	63	8.9999
HEE	chr2:242178992-242179258(-)$1	266	47	50	8.9999
GGG	chr10:79800282-79800495(+)$1	213	107	110	8.9999
!cc	chr6:145021229-145021476(+)$1	247	13	16	8.9999
ccm	chr14:70233829-70234075(+)$1	246	18	21	8.9999
DDD	chr19:1422244-1422508(+)$1	264	2	5	8.9999
YYC	chr2:242187379-242187630(-)$1	251	210	213	8.9999
ccc	chr20:21142724-21143042(+)$1	318	43	46	8.9999
JJJ	chr4:24585843-24586155(-)$1	312	0	3	8.9999
e[c	chr22:36716742-36716974(-)$1	232	104	107	8.9999
:::	chr17:73900521-73900841(-)$1	320	2	5	8.9999
cc2	chr15:60694887-60695166(-)$1	279	132	135	8.9999
:bb	chr9:134307988-134308266(+)$1	278	224	227	8.9999
e[f	chr17:74059953-74060255(-)$1	302	13	16	8.9999
KCC	chr2:27424579-27424815(-)$1	236	5	8	8.9999
JJJ	chr10:105372769-105373050(-)$1	281	14	17	8.9999
{BB	chr11:66391653-66391996(+)$1	343	12	15	8.9999
eee	chr7:99935712-99935987(+)$1	275	160	163	8.9999
DDD	chr5:75896561-75896849(+)$1	288	106	109	8.9999
##c	chr17:7126392-7126656(+)$1	264	128	131	8.9999
eee	chr2:9770369-9770667(-)$1	298	22	25	8.9999
ff!	chr16:16286581-16286819(-)$1	238	13	16	8.9999
fff	chr16:28844281-28844488(+)$1	207	60	63	8.9999
ddd	chr12:69644898-69645210(+)$1	312	14	17	8.9999
b]g	chr7:2400244-2400497(+)$1	253	105	108	8.9999
cc2	chr20:17640781-17641007(-)$1	226	105	108	8.9999
[a!	chr2:232324856-232325099(-)$1	243	9	12	8.9999
bb[	chr4:184129035-184129315(+)$1	280	142	145	8.9999
ccc	chr2:242195938-242196184(-)$1	246	29	32	8.9999
FFF	chr1:23346094-23346407(+)$1	313	2	5	8.9999
[bb	chr9:127623671-127623927(-)$1	256	26	29	8.9999
:::	chr17:47075085-47075380(+)$1	295	3	6	8.9999
MMM	chr19:55752659-55752929(-)$1	270	5	8	8.9999
:::	chr17:37360759-37360983(+)$1	224	10	13	8.9999
{EE	chr2:178257529-178257836(+)$1	307	19	22	8.9999
ttg	chr10:19640846-19641105(+)$1	259	185	188	8.9999
ddd	chr16:840832-841136(+)$1	304	4	7	8.9999
eee	chr7:72891616-72891932(-)$1	316	3	6	8.9999
eee	chr4:74124320-74124609(-)$1	289	66	69	8.9999

#DB
((.	chr2:11751005-11751248(+)$1	1	6	9	8.9999
(((	chr12:104335153-104335386(+)$1	1	68	71	8.9999
(((	chr5:135382382-135382712(+)$1	1	24	27	8.9999
))(	chr17:73227860-73228169(+)$1	1	39	42	8.9999
..)	chr2:27656191-27656452(+)$1	1	22	25	8.9999
...	chr12:26834768-26835029(-)$1	1	70	73	8.9999
(((	chr12:112460231-112460520(+)$1	1	45	48	8.9999
(((	chr11:2979529-2979799(-)$1	1	1	4	8.9999
(((	chr19:57325784-57326069(-)$1	1	16	19	8.9999
...	chr12:76449711-76449916(-)$1	1	48	51	8.9999
..(	chr2:85553534-85553791(-)$1	1	60	63	8.9999
(((	chr2:27656448-27656709(+)$1	1	130	133	8.9999
(((	chr5:145849006-145849328(+)$1	1	169	172	8.9999
(((	chr12:104341355-104341587(+)$1	1	10	13	8.9999
(((	chr17:78617432-78617700(+)$1	1	23	26	8.9999
(((	chr3:184096338-184096630(+)$1	1	8	11	8.9999
(((	chr2:62934303-62934530(+)$1	1	14	17	8.9999
)))	chrY:2713587-2713804(+)$1	1	16	19	8.9999
((.	chr2:232325088-232325294(-)$1	1	22	25	8.9999
..)	chr10:101556161-101556389(+)$1	1	22	25	8.9999
((.	chr20:34326789-34326992(-)$1	1	45	48	8.9999
...	chr12:56744527-56744772(-)$1	1	101	104	8.9999
(((	chrX:76888593-76888919(-)$1	1	51	54	8.9999
(((	chr7:73019989-73020198(-)$1	1	31	34	8.9999
(((	chr17:79564172-79564441(-)$1	1	13	16	8.9999
(((	chr16:15128082-15128337(+)$1	1	5	8	8.9999
..(	chr4:3134459-3134738(+)$1	1	7	10	8.9999
(((	chr2:242206154-242206372(-)$1	1	27	30	8.9999
)))	chr16:23499824-23500126(-)$1	1	31	34	8.9999
...	chr7:73020169-73020392(-)$1	1	17	20	8.9999
..(	chr2:188380266-188380557(+)$1	1	12	15	8.9999
(((	chr6:7581196-7581452(+)$1	1	6	9	8.9999
.((	chr7:1024495-1024740(+)$1	1	1	4	8.9999
..(	chr17:62515342-62515643(+)$1	1	13	16	8.9999
(((	chr15:93467495-93467795(+)$1	1	66	69	8.9999
((.	chr6:26055960-26056203(-)$1	1	40	43	8.9999
.((	chr2:120861538-120861923(+)$1	1	65	68	8.9999
)..	chr2:11348357-11348658(-)$1	1	151	154	8.9999
)))	chr22:38016144-38016407(+)$1	1	11	14	8.9999
...	chr9:116930530-116930781(+)$1	1	20	23	8.9999
(((	chr3:15093903-15094217(-)$1	1	8	11	8.9999
(((	chr1:1334459-1334704(-)$1	1	40	43	8.9999
)((	chr1:8568596-8568835(-)$1	1	61	64	8.9999
.((	chr20:60714835-60715061(-)$1	1	8	11	8.9999
...	chr19:48981593-48981885(+)$1	1	22	25	8.9999
..)	chr14:105911662-105911940(+)$1	1	30	33	8.9999
(((	chr2:166747250-166747559(-)$1	1	39	42	8.9999
(((	chr14:31405604-31405901(-)$1	1	76	79	8.9999
)))	chr11:373127-373379(+)$1	1	40	43	8.9999
))(	chr20:43043164-43043401(+)$1	1	72	75	8.9999
)).	chr1:70716268-70716537(+)$1	1	131	134	8.9999
(((	chr2:71592618-71592924(+)$1	1	18	21	8.9999
.((	chr20:3185082-3185284(-)$1	1	21	24	8.9999
..(	chr20:57268732-57268977(+)$1	1	4	7	8.9999
(((	chr12:6692356-6692593(-)$1	1	6	9	8.9999
..(	chr1:17953759-17954034(+)$1	1	11	14	8.9999
(((	chr1:169500093-169500344(-)$1	1	18	21	8.9999
(((	chr16:18845527-18845818(-)$1	1	33	36	8.9999
...	chr16:50659375-50659598(+)$1	1	10	13	8.9999
))(	chr16:74908200-74908442(-)$1	1	24	27	8.9999
(((	chr9:139693968-139694223(+)$1	1	60	63	8.9999
(((	chr2:242178992-242179258(-)$1	1	47	50	8.9999
(((	chr10:79800282-79800495(+)$1	1	107	110	8.9999
.((	chr6:145021229-145021476(+)$1	1	13	16	8.9999
((.	chr14:70233829-70234075(+)$1	1	18	21	8.9999
(((	chr19:1422244-1422508(+)$1	1	2	5	8.9999
..)	chr2:242187379-242187630(-)$1	1	210	213	8.9999
)))	chr20:21142724-21143042(+)$1	1	43	46	8.9999
(((	chr4:24585843-24586155(-)$1	1	0	3	8.9999
(.(	chr22:36716742-36716974(-)$1	1	104	107	8.9999
...	chr17:73900521-73900841(-)$1	1	2	5	8.9999
)).	chr15:60694887-60695166(-)$1	1	132	135	8.9999
.((	chr9:134307988-134308266(+)$1	1	224	227	8.9999
(.(	chr17:74059953-74060255(-)$1	1	13	16	8.9999
.((	chr2:27424579-27424815(-)$1	1	5	8	8.9999
(((	chr10:105372769-105373050(-)$1	1	14	17	8.9999
.((	chr11:66391653-66391996(+)$1	1	12	15	8.9999
(((	chr7:99935712-99935987(+)$1	1	160	163	8.9999
(((	chr5:75896561-75896849(+)$1	1	106	109	8.9999
..(	chr17:7126392-7126656(+)$1	1	128	131	8.9999
)))	chr2:9770369-9770667(-)$1	1	22	25	8.9999
((.	chr16:16286581-16286819(-)$1	1	13	16	8.9999
(((	chr16:28844281-28844488(+)$1	1	60	63	8.9999
)))	chr12:69644898-69645210(+)$1	1	14	17	8.9999
).)	chr7:2400244-2400497(+)$1	1	105	108	8.9999
)).	chr20:17640781-17641007(-)$1	1	105	108	8.9999
.(.	chr2:232324856-232325099(-)$1	1	9	12	8.9999
((.	chr4:184129035-184129315(+)$1	1	142	145	8.9999
(((	chr2:242195938-242196184(-)$1	1	29	32	8.9999
(((	chr1:23346094-23346407(+)$1	1	2	5	8.9999
.((	chr9:127623671-127623927(-)$1	1	26	29	8.9999
...	chr17:47075085-47075380(+)$1	1	3	6	8.9999
...	chr19:55752659-55752929(-)$1	1	5	8	8.9999
...	chr17:37360759-37360983(+)$1	1	10	13	8.9999
.((	chr2:178257529-178257836(+)$1	1	19	22	8.9999
..)	chr10:19640846-19641105(+)$1	1	185	188	8.9999
(((	chr16:840832-841136(+)$1	1	4	7	8.9999
(((	chr7:72891616-72891932(-)$1	1	3	6	8.9999
)))	chr4:74124320-74124609(-)$1	1	66	69	8.9999

#PSSM
C : 0.94	c : 0.05	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_UTR_m1_run1.nuc.txt

#NT
GUG	chr5:33454973-33455206(+)$1	233	76	79	9.0000
GUG	chr9:95030436-95030640(-)$1	204	28	31	9.0000
GUG	chr10:74035131-74035400(+)$1	269	74	77	9.0000
GUG	chr22:46509505-46509744(+)$1	239	10	13	9.0000
GUG	chr18:13017159-13017405(+)$1	246	176	179	9.0000
GUG	chr10:99225803-99226017(-)$1	214	57	60	9.0000
GUG	chr22:20762132-20762405(+)$1	273	70	73	9.0000
GUG	chr10:64948828-64949154(-)$1	326	95	98	9.0000
GUG	chr16:89627663-89627873(+)$1	210	41	44	9.0000
GUG	chr2:74753970-74754215(-)$1	245	16	19	9.0000
GUG	chr5:138264832-138265065(+)$1	233	18	21	9.0000
GUG	chr6:31704060-31704265(-)$1	205	1	4	9.0000
GUG	chr17:33430321-33430573(-)$1	252	10	13	9.0000
gug	chrX:24095269-24095496(+)$1	227	59	62	9.0000
GUG	chr3:16345665-16345936(+)$1	271	9	12	9.0000
GUG	chr12:69201870-69202126(+)$1	256	22	25	9.0000
GUG	chr17:45015957-45016256(+)$1	299	61	64	9.0000
GUG	chr12:49330245-49330502(-)$1	257	119	122	9.0000
GUG	chr6:34213280-34213491(+)$1	211	34	37	9.0000
GUG	chr19:5691505-5691728(+)$1	223	37	40	9.0000
GUG	chr12:53691534-53691753(+)$1	219	126	129	9.0000
GUG	chr18:55273790-55273998(-)$1	208	25	28	9.0000
GUG	chr6:13316767-13317039(-)$1	272	114	117	9.0000
GUG	chr17:26522143-26522373(+)$1	230	7	10	9.0000
GUG	chr2:175093934-175094184(-)$1	250	24	27	9.0000
GUG	chr9:102731306-102731583(+)$1	277	26	29	9.0000
GUG	chr12:74934295-74934544(+)$1	249	165	168	9.0000
GUG	chr20:57570429-57570700(-)$1	271	35	38	9.0000
GUG	chr4:83996724-83997011(+)$1	287	54	57	9.0000
GUG	chr15:52843892-52844135(-)$1	243	129	132	9.0000
GUG	chr3:10191748-10192007(+)$1	259	66	69	9.0000
GUG	chr1:40206963-40207181(+)$1	218	7	10	9.0000
GUG	chr3:49135956-49136213(-)$1	257	62	65	9.0000
GUG	chr19:42373161-42373384(+)$1	223	59	62	9.0000
GUG	chr2:75196435-75196709(+)$1	274	134	137	9.0000
GUG	chr20:3891179-3891430(+)$1	251	48	51	9.0000
GUG	chr21:35275731-35275967(-)$1	236	43	46	9.0000
GUG	chr5:137772170-137772415(+)$1	245	118	121	9.0000
GUG	chr17:73886363-73886640(-)$1	277	51	54	9.0000
GUG	chr19:2429937-2430193(-)$1	256	57	60	9.0000
GUG	chr10:1086298-1086541(-)$1	243	40	43	9.0000
GUG	chr16:14530328-14530568(-)$1	240	22	25	9.0000
GUG	chr11:66108166-66108439(-)$1	273	2	5	9.0000
GUG	chr12:112241591-112241862(+)$1	271	18	21	9.0000
gug	chr9:86553914-86554171(-)$1	257	26	29	9.0000
GUG	chr16:1872765-1873130(-)$1	365	43	46	9.0000
GUG	chr19:42373132-42373346(+)$1	214	88	91	9.0000
gug	chrX:24095296-24095517(+)$1	221	32	35	9.0000
GUG	chr2:39477483-39477730(-)$1	247	93	96	9.0000
GUG	chr22:29696284-29696523(+)$1	239	11	14	9.0000
GUG	chr19:49993449-49993651(+)$1	202	47	50	9.0000
GUG	chr11:4113030-4113283(+)$1	253	8	11	9.0000
GUG	chr11:308115-308405(+)$1	290	89	92	9.0000
GUG	chr3:41281701-41281910(+)$1	209	27	30	9.0000
GUG	chr15:91565487-91565778(-)$1	291	17	20	9.0000
GUG	chr19:4501225-4501430(+)$1	205	77	80	9.0000
GUG	chr12:56363193-56363457(+)$1	264	65	68	9.0000
GUG	chr11:61564209-61564444(+)$1	235	38	41	9.0000
GUG	chr6:43148390-43148645(+)$1	255	25	28	9.0000
GUG	chr1:203839000-203839282(+)$1	282	46	49	9.0000
GUG	chr8:117738288-117738512(-)$1	224	84	87	9.0000
GUG	chr11:3047885-3048105(-)$1	220	154	157	9.0000
GUG	chr12:46754799-46755069(-)$1	270	96	99	9.0000
GUG	chr19:9949079-9949352(+)$1	273	37	40	9.0000
GUG	chr8:97245316-97245526(-)$1	210	18	21	9.0000
GUG	chr14:60750118-60750357(+)$1	239	15	18	9.0000
GUG	chr15:78397553-78397775(-)$1	222	26	29	9.0000
GUG	chr1:160327947-160328212(+)$1	265	6	9	9.0000
GUG	chr6:64291290-64291540(+)$1	250	22	25	9.0000
GUG	chr19:34942920-34943153(+)$1	233	147	150	9.0000
GUG	chrX:154001383-154001616(+)$1	233	90	93	9.0000
GUG	chr5:10258160-10258442(+)$1	282	23	26	9.0000
gug	chr16:29679259-29679515(+)$1	256	3	6	9.0000
GUG	chr1:93812078-93812363(+)$1	285	60	63	9.0000
GUG	chr18:46858135-46858397(-)$1	262	43	46	9.0000
GUG	chr17:45923338-45923592(-)$1	254	162	165	9.0000
GUG	chr3:49137907-49138116(-)$1	209	88	91	9.0000
GUG	chr3:128888577-128888820(-)$1	243	5	8	9.0000
GUG	chr17:79877846-79878121(-)$1	275	43	46	9.0000
GUG	chr3:25778734-25778985(-)$1	251	74	77	9.0000
gug	chr6:34842163-34842389(+)$1	226	1	4	9.0000
GUG	chr15:65869221-65869467(+)$1	246	32	35	9.0000
GUG	chr2:70523902-70524160(-)$1	258	101	104	9.0000
GUG	chr5:179048325-179048547(-)$1	222	20	23	9.0000
GUG	chr1:38269321-38269564(-)$1	243	13	16	9.0000
GUG	chr1:36769675-36769888(+)$1	213	206	209	9.0000
GUG	chr11:47800365-47800619(-)$1	254	68	71	9.0000
GUG	chr5:126887342-126887556(+)$1	214	91	94	9.0000
GUG	chr12:98994932-98995159(+)$1	227	28	31	9.0000
GUG	chr17:56167824-56168111(+)$1	287	71	74	9.0000
GUG	chr9:4711530-4711799(-)$1	269	13	16	9.0000
GUG	chr7:128398947-128399173(+)$1	226	144	147	9.0000
GUG	chr8:99054786-99054991(-)$1	205	29	32	9.0000
GUG	chr22:45737156-45737383(+)$1	227	87	90	9.0000
GUG	chr17:36962919-36963198(-)$1	279	181	184	9.0000
GUG	chr1:154554517-154554749(-)$1	232	47	50	9.0000
gug	chr3:44486697-44486942(-)$1	245	59	62	9.0000
GUG	chr18:55273798-55274046(-)$1	248	20	23	9.0000
GUG	chr2:37468618-37468863(+)$1	245	13	16	9.0000

#otherMatches

#Struct PSSM
b]c	chr11:57080211-57080481(-)$1	270	211	214	9.0000
HHH	chr5:33454973-33455206(+)$1	233	76	79	9.0000
eee	chr9:95030436-95030640(-)$1	204	28	31	9.0000
cc]	chr10:74035131-74035400(+)$1	269	74	77	9.0000
NNN	chr22:46509505-46509744(+)$1	239	10	13	9.0000
CC}	chr18:13017159-13017405(+)$1	246	176	179	9.0000
ggg	chr10:99225803-99226017(-)$1	214	57	60	9.0000
ffn	chr22:20762132-20762405(+)$1	273	70	73	9.0000
[bb	chr10:64948828-64949154(-)$1	326	95	98	9.0000
hhh	chr16:89627663-89627873(+)$1	210	41	44	9.0000
:::	chr2:74753970-74754215(-)$1	245	16	19	9.0000
c[b	chr5:138264832-138265065(+)$1	233	18	21	9.0000
DDD	chr6:31704060-31704265(-)$1	205	1	4	9.0000
cc!	chr17:33430321-33430573(-)$1	252	10	13	9.0000
d22	chrX:24095269-24095496(+)$1	227	59	62	9.0000
JJJ	chr3:16345665-16345936(+)$1	271	9	12	9.0000
c[h	chr12:69201870-69202126(+)$1	256	22	25	9.0000
cc!	chr17:45015957-45016256(+)$1	299	61	64	9.0000
ddd	chr12:49330245-49330502(-)$1	257	119	122	9.0000
eed	chr6:34213280-34213491(+)$1	211	34	37	9.0000
ddd	chr19:5691505-5691728(+)$1	223	37	40	9.0000
d[a	chr12:53691534-53691753(+)$1	219	126	129	9.0000
bbm	chr18:55273790-55273998(-)$1	208	25	28	9.0000
[hh	chr6:13316767-13317039(-)$1	272	114	117	9.0000
ee!	chr17:26522143-26522373(+)$1	230	7	10	9.0000
EEE	chr2:175093934-175094184(-)$1	250	24	27	9.0000
mmm	chr9:102731306-102731583(+)$1	277	26	29	9.0000
nnn	chr12:74934295-74934544(+)$1	249	165	168	9.0000
ggg	chr20:57570429-57570700(-)$1	271	35	38	9.0000
gg$	chr4:83996724-83997011(+)$1	287	54	57	9.0000
nnn	chr15:52843892-52844135(-)$1	243	129	132	9.0000
===	chr3:10191748-10192007(+)$1	259	66	69	9.0000
ddd	chr1:40206963-40207181(+)$1	218	7	10	9.0000
GG{	chr3:49135956-49136213(-)$1	257	62	65	9.0000
c]e	chr19:42373161-42373384(+)$1	223	59	62	9.0000
d::	chr2:75196435-75196709(+)$1	274	134	137	9.0000
g55	chr20:3891179-3891430(+)$1	251	48	51	9.0000
"""	chr21:35275731-35275967(-)$1	236	43	46	9.0000
eee	chr5:137772170-137772415(+)$1	245	118	121	9.0000
444	chr17:73886363-73886640(-)$1	277	51	54	9.0000
FFf	chr19:2429937-2430193(-)$1	256	57	60	9.0000
fff	chr10:1086298-1086541(-)$1	243	40	43	9.0000
EEE	chr16:14530328-14530568(-)$1	240	22	25	9.0000
ddd	chr11:66108166-66108439(-)$1	273	2	5	9.0000
ppp	chr12:112241591-112241862(+)$1	271	18	21	9.0000
%%%	chr9:86553914-86554171(-)$1	257	26	29	9.0000
DLL	chr16:1872765-1873130(-)$1	365	43	46	9.0000
JJJ	chr19:42373132-42373346(+)$1	214	88	91	9.0000
fff	chrX:24095296-24095517(+)$1	221	32	35	9.0000
===	chr2:39477483-39477730(-)$1	247	93	96	9.0000
eee	chr22:29696284-29696523(+)$1	239	11	14	9.0000
bbd	chr19:49993449-49993651(+)$1	202	47	50	9.0000
III	chr11:4113030-4113283(+)$1	253	8	11	9.0000
{CC	chr11:308115-308405(+)$1	290	89	92	9.0000
eee	chr3:41281701-41281910(+)$1	209	27	30	9.0000
IID	chr15:91565487-91565778(-)$1	291	17	20	9.0000
nnn	chr19:4501225-4501430(+)$1	205	77	80	9.0000
DDD	chr12:56363193-56363457(+)$1	264	65	68	9.0000
fff	chr11:61564209-61564444(+)$1	235	38	41	9.0000
nnb	chr6:43148390-43148645(+)$1	255	25	28	9.0000
^gg	chr1:203839000-203839282(+)$1	282	46	49	9.0000
22b	chr8:117738288-117738512(-)$1	224	84	87	9.0000
oa]	chr11:3047885-3048105(-)$1	220	154	157	9.0000
c]c	chr12:46754799-46755069(-)$1	270	96	99	9.0000
CCC	chr19:9949079-9949352(+)$1	273	37	40	9.0000
dd+	chr8:97245316-97245526(-)$1	210	18	21	9.0000
ggg	chr14:60750118-60750357(+)$1	239	15	18	9.0000
{FF	chr15:78397553-78397775(-)$1	222	26	29	9.0000
[a[	chr1:160327947-160328212(+)$1	265	6	9	9.0000
rcc	chr6:64291290-64291540(+)$1	250	22	25	9.0000
""e	chr19:34942920-34943153(+)$1	233	147	150	9.0000
oee	chrX:154001383-154001616(+)$1	233	90	93	9.0000
pbb	chr5:10258160-10258442(+)$1	282	23	26	9.0000
:::	chr16:29679259-29679515(+)$1	256	3	6	9.0000
FFF	chr1:93812078-93812363(+)$1	285	60	63	9.0000
ee^	chr18:46858135-46858397(-)$1	262	43	46	9.0000
ccl	chr17:45923338-45923592(-)$1	254	162	165	9.0000
fff	chr3:49137907-49138116(-)$1	209	88	91	9.0000
GGG	chr3:128888577-128888820(-)$1	243	5	8	9.0000
dd]	chr17:79877846-79878121(-)$1	275	43	46	9.0000
ddd	chr3:25778734-25778985(-)$1	251	74	77	9.0000
FFF	chr6:34842163-34842389(+)$1	226	1	4	9.0000
bb[	chr15:65869221-65869467(+)$1	246	32	35	9.0000
b]g	chr2:70523902-70524160(-)$1	258	101	104	9.0000
DDD	chr5:179048325-179048547(-)$1	222	20	23	9.0000
rrr	chr1:38269321-38269564(-)$1	243	13	16	9.0000
e]b	chr1:36769675-36769888(+)$1	213	206	209	9.0000
fff	chr11:47800365-47800619(-)$1	254	68	71	9.0000
nnn	chr5:126887342-126887556(+)$1	214	91	94	9.0000
$$c	chr12:98994932-98995159(+)$1	227	28	31	9.0000
"""	chr17:56167824-56168111(+)$1	287	71	74	9.0000
ddd	chr9:4711530-4711799(-)$1	269	13	16	9.0000
44e	chr7:128398947-128399173(+)$1	226	144	147	9.0000
ddE	chr8:99054786-99054991(-)$1	205	29	32	9.0000
(dd	chr22:45737156-45737383(+)$1	227	87	90	9.0000
GGG	chr17:36962919-36963198(-)$1	279	181	184	9.0000
qqh	chr1:154554517-154554749(-)$1	232	47	50	9.0000
###	chr3:44486697-44486942(-)$1	245	59	62	9.0000
ee:	chr18:55273798-55274046(-)$1	248	20	23	9.0000
B{C	chr2:37468618-37468863(+)$1	245	13	16	9.0000

#DB
).)	chr11:57080211-57080481(-)$1	1	211	214	9.0000
(((	chr5:33454973-33455206(+)$1	1	76	79	9.0000
)))	chr9:95030436-95030640(-)$1	1	28	31	9.0000
)).	chr10:74035131-74035400(+)$1	1	74	77	9.0000
...	chr22:46509505-46509744(+)$1	1	10	13	9.0000
)).	chr18:13017159-13017405(+)$1	1	176	179	9.0000
)))	chr10:99225803-99226017(-)$1	1	57	60	9.0000
((.	chr22:20762132-20762405(+)$1	1	70	73	9.0000
.((	chr10:64948828-64949154(-)$1	1	95	98	9.0000
(((	chr16:89627663-89627873(+)$1	1	41	44	9.0000
...	chr2:74753970-74754215(-)$1	1	16	19	9.0000
(.(	chr5:138264832-138265065(+)$1	1	18	21	9.0000
(((	chr6:31704060-31704265(-)$1	1	1	4	9.0000
((.	chr17:33430321-33430573(-)$1	1	10	13	9.0000
)..	chrX:24095269-24095496(+)$1	1	59	62	9.0000
(((	chr3:16345665-16345936(+)$1	1	9	12	9.0000
(.(	chr12:69201870-69202126(+)$1	1	22	25	9.0000
((.	chr17:45015957-45016256(+)$1	1	61	64	9.0000
)))	chr12:49330245-49330502(-)$1	1	119	122	9.0000
(((	chr6:34213280-34213491(+)$1	1	34	37	9.0000
(((	chr19:5691505-5691728(+)$1	1	37	40	9.0000
(.(	chr12:53691534-53691753(+)$1	1	126	129	9.0000
((.	chr18:55273790-55273998(-)$1	1	25	28	9.0000
.((	chr6:13316767-13317039(-)$1	1	114	117	9.0000
((.	chr17:26522143-26522373(+)$1	1	7	10	9.0000
(((	chr2:175093934-175094184(-)$1	1	24	27	9.0000
...	chr9:102731306-102731583(+)$1	1	26	29	9.0000
...	chr12:74934295-74934544(+)$1	1	165	168	9.0000
)))	chr20:57570429-57570700(-)$1	1	35	38	9.0000
((.	chr4:83996724-83997011(+)$1	1	54	57	9.0000
...	chr15:52843892-52844135(-)$1	1	129	132	9.0000
(((	chr3:10191748-10192007(+)$1	1	66	69	9.0000
)))	chr1:40206963-40207181(+)$1	1	7	10	9.0000
((.	chr3:49135956-49136213(-)$1	1	62	65	9.0000
).)	chr19:42373161-42373384(+)$1	1	59	62	9.0000
)..	chr2:75196435-75196709(+)$1	1	134	137	9.0000
)..	chr20:3891179-3891430(+)$1	1	48	51	9.0000
...	chr21:35275731-35275967(-)$1	1	43	46	9.0000
)))	chr5:137772170-137772415(+)$1	1	118	121	9.0000
...	chr17:73886363-73886640(-)$1	1	51	54	9.0000
(((	chr19:2429937-2430193(-)$1	1	57	60	9.0000
(((	chr10:1086298-1086541(-)$1	1	40	43	9.0000
(((	chr16:14530328-14530568(-)$1	1	22	25	9.0000
(((	chr11:66108166-66108439(-)$1	1	2	5	9.0000
...	chr12:112241591-112241862(+)$1	1	18	21	9.0000
...	chr9:86553914-86554171(-)$1	1	26	29	9.0000
(..	chr16:1872765-1873130(-)$1	1	43	46	9.0000
(((	chr19:42373132-42373346(+)$1	1	88	91	9.0000
(((	chrX:24095296-24095517(+)$1	1	32	35	9.0000
)))	chr2:39477483-39477730(-)$1	1	93	96	9.0000
)))	chr22:29696284-29696523(+)$1	1	11	14	9.0000
(((	chr19:49993449-49993651(+)$1	1	47	50	9.0000
(((	chr11:4113030-4113283(+)$1	1	8	11	9.0000
.((	chr11:308115-308405(+)$1	1	89	92	9.0000
(((	chr3:41281701-41281910(+)$1	1	27	30	9.0000
(((	chr15:91565487-91565778(-)$1	1	17	20	9.0000
...	chr19:4501225-4501430(+)$1	1	77	80	9.0000
(((	chr12:56363193-56363457(+)$1	1	65	68	9.0000
)))	chr11:61564209-61564444(+)$1	1	38	41	9.0000
..)	chr6:43148390-43148645(+)$1	1	25	28	9.0000
.))	chr1:203839000-203839282(+)$1	1	46	49	9.0000
..)	chr8:117738288-117738512(-)$1	1	84	87	9.0000
.).	chr11:3047885-3048105(-)$1	1	154	157	9.0000
).)	chr12:46754799-46755069(-)$1	1	96	99	9.0000
(((	chr19:9949079-9949352(+)$1	1	37	40	9.0000
((.	chr8:97245316-97245526(-)$1	1	18	21	9.0000
)))	chr14:60750118-60750357(+)$1	1	15	18	9.0000
.((	chr15:78397553-78397775(-)$1	1	26	29	9.0000
.(.	chr1:160327947-160328212(+)$1	1	6	9	9.0000
.))	chr6:64291290-64291540(+)$1	1	22	25	9.0000
..(	chr19:34942920-34943153(+)$1	1	147	150	9.0000
.))	chrX:154001383-154001616(+)$1	1	90	93	9.0000
.))	chr5:10258160-10258442(+)$1	1	23	26	9.0000
...	chr16:29679259-29679515(+)$1	1	3	6	9.0000
(((	chr1:93812078-93812363(+)$1	1	60	63	9.0000
((.	chr18:46858135-46858397(-)$1	1	43	46	9.0000
((.	chr17:45923338-45923592(-)$1	1	162	165	9.0000
)))	chr3:49137907-49138116(-)$1	1	88	91	9.0000
(((	chr3:128888577-128888820(-)$1	1	5	8	9.0000
)).	chr17:79877846-79878121(-)$1	1	43	46	9.0000
(((	chr3:25778734-25778985(-)$1	1	74	77	9.0000
(((	chr6:34842163-34842389(+)$1	1	1	4	9.0000
((.	chr15:65869221-65869467(+)$1	1	32	35	9.0000
).)	chr2:70523902-70524160(-)$1	1	101	104	9.0000
(((	chr5:179048325-179048547(-)$1	1	20	23	9.0000
...	chr1:38269321-38269564(-)$1	1	13	16	9.0000
).)	chr1:36769675-36769888(+)$1	1	206	209	9.0000
(((	chr11:47800365-47800619(-)$1	1	68	71	9.0000
...	chr5:126887342-126887556(+)$1	1	91	94	9.0000
..(	chr12:98994932-98995159(+)$1	1	28	31	9.0000
...	chr17:56167824-56168111(+)$1	1	71	74	9.0000
(((	chr9:4711530-4711799(-)$1	1	13	16	9.0000
..)	chr7:128398947-128399173(+)$1	1	144	147	9.0000
))(	chr8:99054786-99054991(-)$1	1	29	32	9.0000
.((	chr22:45737156-45737383(+)$1	1	87	90	9.0000
)))	chr17:36962919-36963198(-)$1	1	181	184	9.0000
..)	chr1:154554517-154554749(-)$1	1	47	50	9.0000
...	chr3:44486697-44486942(-)$1	1	59	62	9.0000
)).	chr18:55273798-55274046(-)$1	1	20	23	9.0000
(.(	chr2:37468618-37468863(+)$1	1	13	16	9.0000

#PSSM
G : 0.94	g : 0.06	
U : 0.94	u : 0.06	
G : 0.94	g : 0.06	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_CDS_m1_run1.nuc.txt

#NT
UCCUGGAG	chr6:27860699-27860962(-)$1	263	222	230	16.4999
ACCUGGAG	chr17:57760376-57760628(+)$1	252	209	217	16.3684
CCCUGGUG	chr15:90349205-90349456(-)$1	251	147	155	15.0526
UCCUGGAG	chr11:118965878-118966152(-)$1	274	235	243	16.4999
CCCGGGAG	chr7:5569065-5569288(-)$1	223	150	158	15.1842
CCCUGCAG	chr3:186289783-186290016(+)$1	233	177	185	15.9736
CCCUGGAC	chr17:76968477-76968715(-)$1	238	78	86	14.6578
CUCUGGAG	chr17:80194612-80194843(+)$1	231	211	219	14.6578
ACCUGGAG	chr17:1648902-1649127(+)$1	225	50	58	16.3684
CCAUGGAG	chr2:65216709-65216996(+)$1	287	66	74	15.7105
CCCUGGGG	chr11:71155012-71155348(-)$1	336	324	332	15.1842
GCCUGGAG	chr17:76972072-76972330(-)$1	258	27	35	16.1052
CCAUGGAG	chr17:37856380-37856666(+)$1	286	109	117	15.7105
GCCUGGAG	chr1:8925303-8925546(-)$1	243	5	13	16.1052
CCCUGCAG	chr16:30080526-30080732(+)$1	206	92	100	15.9736
CCUUGGAG	chr12:6707362-6707656(-)$1	294	183	191	15.4473
CCCUGGAG	chr2:97526689-97526997(-)$1	308	255	263	19.3947
CCCUGGGG	chr14:94849130-94849354(-)$1	224	45	53	15.1842
UCCUGGAG	chr11:75277311-75277579(+)$1	268	117	125	16.4999
CCAUGGAG	chr19:10394121-10394392(+)$1	271	240	248	15.7105
UCCUGGAG	chr17:80044838-80045076(-)$1	238	61	69	16.4999
CCCUGCAG	chrX:70443663-70443898(+)$1	235	126	134	15.9736
CCCUGCAG	chr1:230845944-230846202(-)$1	258	153	161	15.9736
CCCUGGAG	chr19:1244213-1244481(+)$1	268	212	220	19.3947
CCCAGGAG	chr3:52020902-52021157(+)$1	255	186	194	15.3157
CCCUGCAG	chr1:230846035-230846258(-)$1	223	209	217	15.9736
UCCUGGAG	chr17:72435834-72436112(+)$1	278	235	243	16.4999
CCCCGGAG	chr13:113803560-113803834(+)$1	274	236	244	15.3157
CCGUGGAG	chr15:72494775-72495019(-)$1	244	164	172	15.7105
ACCUGGAG	chr6:31323913-31324230(-)$1	317	215	223	16.3684
ACCUGGAG	chr22:43024127-43024382(-)$1	255	54	62	16.3684
CCCCGGAG	chr20:30142450-30142694(+)$1	244	230	238	15.3157
CCCUGGAG	chr17:80049339-80049591(-)$1	252	41	49	19.3947
CCCAGGAG	chr2:21266684-21266925(-)$1	241	80	88	15.3157
CCCUGGCG	chr22:39141592-39141878(-)$1	286	1	9	15.0526
CCCUGCAG	chr16:30080555-30080785(+)$1	230	63	71	15.9736
CCGUGGAG	chr16:8948971-8949234(-)$1	263	137	145	15.7105

#otherMatches

#Struct PSSM
b]ffffff	chr1:155989725-155989991(-)$1	266	133	141	15.7105
}DDDDYYC	chr6:27860699-27860962(-)$1	263	222	230	16.4999
::eeeee[	chr17:57760376-57760628(+)$1	252	209	217	16.3684
[cccnnnn	chr15:90349205-90349456(-)$1	251	147	155	15.0526
YYEEEEEG	chr11:118965878-118966152(-)$1	274	235	243	16.4999
========	chr7:5569065-5569288(-)$1	223	150	158	15.1842
ccccc!!c	chr3:186289783-186290016(+)$1	233	177	185	15.9736
c"""ccc[	chr17:76968477-76968715(-)$1	238	78	86	14.6578
dd22dddd	chr17:80194612-80194843(+)$1	231	211	219	14.6578
llccc22a	chr17:1648902-1649127(+)$1	225	50	58	16.3684
e!!a[ccc	chr2:65216709-65216996(+)$1	287	66	74	15.7105
JJJJJJJ:	chr11:71155012-71155348(-)$1	336	324	332	15.1842
IIIIII{B	chr17:76972072-76972330(-)$1	258	27	35	16.1052
%%%%ffff	chr17:37856380-37856666(+)$1	286	109	117	15.7105
CCKKDDDD	chr1:8925303-8925546(-)$1	243	5	13	16.1052
4ffffff:	chr16:30080526-30080732(+)$1	206	92	100	15.9736
ff!!dddd	chr12:6707362-6707656(-)$1	294	183	191	15.4473
EEE}BB}F	chr2:97526689-97526997(-)$1	308	255	263	19.3947
33gggggg	chr14:94849130-94849354(-)$1	224	45	53	15.1842
qqqqffff	chr11:75277311-75277579(+)$1	268	117	125	16.4999
zzzzzzzz	chr19:10394121-10394392(+)$1	271	240	248	15.7105
DDDDccce	chr17:80044838-80045076(-)$1	238	61	69	16.4999
e:GGGGGG	chrX:70443663-70443898(+)$1	235	126	134	15.9736
ccnnnnnc	chr1:230845944-230846202(-)$1	258	153	161	15.9736
22eeeee4	chr19:1244213-1244481(+)$1	268	212	220	19.3947
GGGYYA}E	chr3:52020902-52021157(+)$1	255	186	194	15.3157
}DDDDYYF	chr1:230846035-230846258(-)$1	223	209	217	15.9736
eeee:FFF	chr17:72435834-72436112(+)$1	278	235	243	16.4999
eeeebb:B	chr13:113803560-113803834(+)$1	274	236	244	15.3157
iiffffff	chr15:72494775-72495019(-)$1	244	164	172	15.7105
CCHHHHHH	chr6:31323913-31324230(-)$1	317	215	223	16.3684
EEE{A{DD	chr22:43024127-43024382(-)$1	255	54	62	16.3684
ccc:EEEE	chr20:30142450-30142694(+)$1	244	230	238	15.3157
c[a[bb[a	chr17:80049339-80049591(-)$1	252	41	49	19.3947
ddd]bb:D	chr2:21266684-21266925(-)$1	241	80	88	15.3157
ggggggg!	chr22:39141592-39141878(-)$1	286	1	9	15.0526
d[cccccc	chr16:30080555-30080785(+)$1	230	63	71	15.9736
c4444eee	chr16:8948971-8949234(-)$1	263	137	145	15.7105

#DB
).))))))	chr1:155989725-155989991(-)$1	1	133	141	15.7105
.))))..)	chr6:27860699-27860962(-)$1	1	222	230	16.4999
..(((((.	chr17:57760376-57760628(+)$1	1	209	217	16.3684
.(((....	chr15:90349205-90349456(-)$1	1	147	155	15.0526
..))))))	chr11:118965878-118966152(-)$1	1	235	243	16.4999
((((((((	chr7:5569065-5569288(-)$1	1	150	158	15.1842
))(((..(	chr3:186289783-186290016(+)$1	1	177	185	15.9736
(...(((.	chr17:76968477-76968715(-)$1	1	78	86	14.6578
))..))))	chr17:80194612-80194843(+)$1	1	211	219	14.6578
..)))..)	chr17:1648902-1649127(+)$1	1	50	58	16.3684
(..(.(((	chr2:65216709-65216996(+)$1	1	66	74	15.7105
))))))).	chr11:71155012-71155348(-)$1	1	324	332	15.1842
((((((.(	chr17:76972072-76972330(-)$1	1	27	35	16.1052
....((((	chr17:37856380-37856666(+)$1	1	109	117	15.7105
((..((((	chr1:8925303-8925546(-)$1	1	5	13	16.1052
.)))))).	chr16:30080526-30080732(+)$1	1	92	100	15.9736
((..((((	chr12:6707362-6707656(-)$1	1	183	191	15.4473
))).)).)	chr2:97526689-97526997(-)$1	1	255	263	19.3947
..))))))	chr14:94849130-94849354(-)$1	1	45	53	15.1842
....))))	chr11:75277311-75277579(+)$1	1	117	125	16.4999
........	chr19:10394121-10394392(+)$1	1	240	248	15.7105
((((((((	chr17:80044838-80045076(-)$1	1	61	69	16.4999
).))))))	chrX:70443663-70443898(+)$1	1	126	134	15.9736
((.....)	chr1:230845944-230846202(-)$1	1	153	161	15.9736
..))))).	chr19:1244213-1244481(+)$1	1	212	220	19.3947
)))..).)	chr3:52020902-52021157(+)$1	1	186	194	15.3157
.))))..)	chr1:230846035-230846258(-)$1	1	209	217	15.9736
)))).)))	chr17:72435834-72436112(+)$1	1	235	243	16.4999
)))))).)	chr13:113803560-113803834(+)$1	1	236	244	15.3157
))))))))	chr15:72494775-72495019(-)$1	1	164	172	15.7105
))))))))	chr6:31323913-31324230(-)$1	1	215	223	16.3684
(((.(.((	chr22:43024127-43024382(-)$1	1	54	62	16.3684
))).))))	chr20:30142450-30142694(+)$1	1	230	238	15.3157
(.(.((.(	chr17:80049339-80049591(-)$1	1	41	49	19.3947
))).)).(	chr2:21266684-21266925(-)$1	1	80	88	15.3157
(((((((.	chr22:39141592-39141878(-)$1	1	1	9	15.0526
(.((((((	chr16:30080555-30080785(+)$1	1	63	71	15.9736
)....)))	chr16:8948971-8949234(-)$1	1	137	145	15.7105

#PSSM
C : 0.71	U : 0.13	A : 0.10	G : 0.05	
C : 0.97	U : 0.02	
C : 0.81	G : 0.07	A : 0.07	U : 0.02	
U : 0.86	A : 0.05	C : 0.05	G : 0.02	
G : 0.99	
G : 0.84	C : 0.15	
A : 0.89	G : 0.05	U : 0.02	C : 0.02	
G : 0.97	C : 0.02	

#score	610.1578947368417
#seq	38
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_transcript_m3_run1.nuc.txt

#NT
AAUGGAGGGUGGGGGAGCCGAGGUCCAUGCCCAGCUACCCUCUCUUGAAGGAGACUUGAGAGGACCAGAUGUUAAGCUCGAAGGGCCCGAUGUUUCUCUAAAGGGGCCAGGAGUAGACUUGCCUUCAGUGAACCUCUCUAUGCCAAAAGUCUCUGGGCCUGACCUUGAUCUGAACUUGAAAGGACCAAGUUUGAAGGGAGACCUGGAUGCAUCUGUUCCCAGCAUGAAGGUGCAUGCUCCAGGGCUCAACCUCAGUGGUGUCGGUGGCAAAAUGCAGGUGGGAGGAGA	chr11:62285839-62286158(-)$1	319	10	298	374.0000

#otherMatches

#Struct PSSM
ee]ccc]ccc22eeeeeeeeee[a[bblllbb]aeeeee:EEEEEKKDDDDHHHHHHHHMMMMCCC{A{A{BBcccooooooccc:::::eeeee!!a[ddddmmmmdddd]a22eeeeeeeeee[hhhhhhhh$$$$$eeeeemmmmeeeee4444hhhhhhhh]eeeeeBBAACCCYYHHHHHHHH::::DDDD{BBDDDDHHHHHHHHcccmmmmccc:hhhhhhhh!!cccuuuuuuuuuuuuccc]hhhhhhhhccc"""ddddnnnnndddd333ccc:HHH	chr22:35738301-35738657(+)$1	356	38	326	374.0000
OFFFFFFCCCeeeeeccc[a[cccmmmmccca]ccc]eeeeeBBGGGGGGG:::eeeee[aqqqqqqqqa]eeeeeccc####eeeeexxxxxxxxxxxxxxxeeeee22ccc::::::::GGGGGGG}BBCCC}FFFFFFCCC::::FFFFFFKKEEEEE:dddd####hhhhhhhhppppppphhhhhhhhddddccc[ffffffgggggggvvvvvvvvvvvvvggggggg333ffffff]ccc:cccnnnnncccccclllccc::::::EEEEE~~~~FFFFF	chr11:62285839-62286158(-)$1	319	10	298	374.0000

#DB
)).))).)))..)))))(((((.(.((...)).)))))).(((((..((((((((((((....(((.(.(.(((((......))).....(((((..(.((((....)))).)..)))))(((((.((((((((.....(((((....)))))....)))))))).))))))))))))..))))))))....((((.(((((((((((((((((....))).((((((((..(((............))).))))))))(((...((((.....))))...))).)))	chr22:35738301-35738657(+)$1	1	38	326	374.0000
.(((((((((((((((((.(.(((....)))).))).)))))(((((((((...(((((.(........).)))))(((....(((((...............)))))..)))........))))))).))))).)))))))))....((((((..(((((.((((....((((((((.......))))))))))))(((.(((((((((((((.............)))))))...)))))).))).(((.....)))(((...)))......)))))....)))))	chr11:62285839-62286158(-)$1	1	10	298	374.0000

#PSSM
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
A : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	

#score	748.0
#seq	2
#width	288
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_CDS_m3_run1.nuc.txt

#NT
AGCC	chr20:30193032-30193344(+)$1	312	140	144	12.0000
AGCC	chr9:35072246-35072534(-)$1	288	49	53	12.0000
AGCC	chr15:66797025-66797283(-)$1	258	115	119	12.0000
AGCC	chr16:18800285-18800534(-)$1	249	92	96	12.0000
AGCC	chr1:228645377-228645637(-)$1	260	17	21	12.0000
AGCC	chr1:33502293-33502576(-)$1	283	269	273	12.0000
AGCC	chr11:75110463-75110722(+)$1	259	44	48	12.0000
AGCC	chr1:45984588-45984827(-)$1	239	159	163	12.0000
AGCC	chr1:110950106-110950351(-)$1	245	86	90	12.0000
AGCC	chr11:118272322-118272533(+)$1	211	18	22	12.0000
AGCC	chrX:77154866-77155152(+)$1	286	89	93	12.0000
AGCC	chr8:74205736-74205964(-)$1	228	175	179	12.0000
AGCC	chr22:38902134-38902410(-)$1	276	11	15	12.0000
AGCC	chr20:60962566-60962796(+)$1	230	174	178	12.0000
AGCC	chr12:57066704-57066950(-)$1	246	103	107	12.0000
AGCC	chr6:27835150-27835448(-)$1	298	58	62	12.0000
AGCC	chr12:56510878-56511095(+)$1	217	21	25	12.0000
AGCC	chr1:45478473-45478722(+)$1	249	53	57	12.0000
AGCC	chr6:26217077-26217341(+)$1	264	66	70	12.0000
AGCC	chr11:5290985-5291212(-)$1	227	131	135	12.0000
AGCC	chr12:57039581-57039850(-)$1	269	75	79	12.0000
AGCC	chr15:63449498-63449762(-)$1	264	32	36	12.0000
AGCC	chr11:67351833-67352041(+)$1	208	198	202	12.0000
AGCC	chr14:50052926-50053207(-)$1	281	167	171	12.0000
AGCC	chr15:64385842-64386171(-)$1	329	271	275	12.0000
AGCC	chr7:22862287-22862557(-)$1	270	213	217	12.0000
AGCC	chr4:39460409-39460618(-)$1	209	4	8	12.0000
AGCC	chr7:75931945-75932194(+)$1	249	26	30	12.0000
AGCC	chr12:49524980-49525274(-)$1	294	58	62	12.0000
AGCC	chr6:27860776-27861050(-)$1	274	17	21	12.0000
AGCC	chr6:27114793-27115052(+)$1	259	248	252	12.0000
AGCC	chr21:35287931-35288190(-)$1	259	181	185	12.0000
AGCC	chr5:68462855-68463201(+)$1	346	29	33	12.0000
AGCC	chr12:6976647-6976905(+)$1	258	201	205	12.0000
AGCC	chr6:27100350-27100637(-)$1	287	115	119	12.0000
AGCC	chr19:49999594-49999824(+)$1	230	50	54	12.0000
AGCC	chr1:36106924-36107221(-)$1	297	167	171	12.0000
AGCC	chr5:1801446-1801708(+)$1	262	22	26	12.0000
AGCC	chr5:140026967-140027302(-)$1	335	43	47	12.0000
AGCC	chr6:144416512-144416800(-)$1	288	1	5	12.0000
AGCC	chr8:126010673-126010976(+)$1	303	26	30	12.0000
AGCC	chr6:27775504-27775784(-)$1	280	196	200	12.0000
AGCC	chr11:5269438-5269750(-)$1	312	295	299	12.0000
AGCC	chr11:17099065-17099318(-)$1	253	170	174	12.0000
AGCC	chr15:40331192-40331460(-)$1	268	73	77	12.0000
AGCC	chr19:572492-572804(+)$1	312	195	199	12.0000
AGCC	chr6:26204757-26205049(+)$1	292	209	213	12.0000
AGCC	chr7:10979563-10979855(-)$1	292	36	40	12.0000
AGCC	chr11:63742045-63742316(+)$1	271	42	46	12.0000
AGCC	chr12:56510477-56510683(+)$1	206	58	62	12.0000
AGCC	chr1:8934782-8935059(-)$1	277	250	254	12.0000
AGCC	chr1:110950151-110950415(-)$1	264	150	154	12.0000
AGCC	chr6:75953335-75953601(-)$1	266	19	23	12.0000
AGCC	chr12:112846323-112846555(-)$1	232	3	7	12.0000
AGCC	chr19:49999624-49999828(+)$1	204	20	24	12.0000
AGCC	chr6:27775856-27776113(+)$1	257	24	28	12.0000
AGCC	chr19:36142034-36142264(+)$1	230	165	169	12.0000
AGCC	chr16:202762-203043(+)$1	281	6	10	12.0000
AGCC	chr10:75541713-75542002(+)$1	289	17	21	12.0000
AGCC	chrX:55052282-55052549(-)$1	267	127	131	12.0000
AGCC	chr10:7830042-7830320(+)$1	278	174	178	12.0000
AGCC	chr1:149858072-149858325(-)$1	253	40	44	12.0000
AGCC	chr9:113018606-113018926(-)$1	320	183	187	12.0000
AGCC	chr12:6643913-6644128(+)$1	215	60	64	12.0000
AGCC	chr7:54825116-54825362(-)$1	246	106	110	12.0000
AGCC	chr12:131357028-131357263(+)$1	235	126	130	12.0000
AGCC	chr6:26158312-26158602(+)$1	290	181	185	12.0000
AGCC	chr12:131356521-131356773(+)$1	252	113	117	12.0000
AGCC	chr11:63448939-63449226(+)$1	287	82	86	12.0000
AGCC	chr1:19923404-19923696(+)$1	292	281	285	12.0000
AGCC	chr16:18800334-18800541(-)$1	207	99	103	12.0000
AGCC	chr4:39460418-39460633(-)$1	215	19	23	12.0000
AGCC	chr11:5290936-5291159(-)$1	223	78	82	12.0000
AGCC	chr2:98262431-98262750(+)$1	319	19	23	12.0000
AGCC	chr6:26021825-26022085(+)$1	260	175	179	12.0000

#otherMatches

#Struct PSSM
DDDD	chr17:26902392-26902664(-)$1	272	8	12	12.0000
cc:D	chr20:30193032-30193344(+)$1	312	140	144	12.0000
ccc[	chr9:35072246-35072534(-)$1	288	49	53	12.0000
gggg	chr15:66797025-66797283(-)$1	258	115	119	12.0000
ee]b	chr16:18800285-18800534(-)$1	249	92	96	12.0000
:CCC	chr1:228645377-228645637(-)$1	260	17	21	12.0000
ZDDD	chr1:33502293-33502576(-)$1	283	269	273	12.0000
DD::	chr11:75110463-75110722(+)$1	259	44	48	12.0000
33bb	chr1:45984588-45984827(-)$1	239	159	163	12.0000
d[bb	chr1:110950106-110950351(-)$1	245	86	90	12.0000
:eee	chr11:118272322-118272533(+)$1	211	18	22	12.0000
hh[b	chrX:77154866-77155152(+)$1	286	89	93	12.0000
efff	chr8:74205736-74205964(-)$1	228	175	179	12.0000
eee:	chr22:38902134-38902410(-)$1	276	11	15	12.0000
DDZZ	chr20:60962566-60962796(+)$1	230	174	178	12.0000
%ccc	chr12:57066704-57066950(-)$1	246	103	107	12.0000
fff[	chr6:27835150-27835448(-)$1	298	58	62	12.0000
dddd	chr12:56510878-56511095(+)$1	217	21	25	12.0000
:DDD	chr1:45478473-45478722(+)$1	249	53	57	12.0000
cc::	chr6:26217077-26217341(+)$1	264	66	70	12.0000
gggg	chr11:5290985-5291212(-)$1	227	131	135	12.0000
BBNN	chr12:57039581-57039850(-)$1	269	75	79	12.0000
EEEE	chr15:63449498-63449762(-)$1	264	32	36	12.0000
bbhh	chr11:67351833-67352041(+)$1	208	198	202	12.0000
oooo	chr14:50052926-50053207(-)$1	281	167	171	12.0000
::ee	chr15:64385842-64386171(-)$1	329	271	275	12.0000
fff:	chr7:22862287-22862557(-)$1	270	213	217	12.0000
GGGG	chr4:39460409-39460618(-)$1	209	4	8	12.0000
DDDD	chr7:75931945-75932194(+)$1	249	26	30	12.0000
dddd	chr12:49524980-49525274(-)$1	294	58	62	12.0000
qqqq	chr6:27860776-27861050(-)$1	274	17	21	12.0000
CCC:	chr6:27114793-27115052(+)$1	259	248	252	12.0000
:::d	chr21:35287931-35288190(-)$1	259	181	185	12.0000
mmmm	chr5:68462855-68463201(+)$1	346	29	33	12.0000
##ee	chr12:6976647-6976905(+)$1	258	201	205	12.0000
]===	chr6:27100350-27100637(-)$1	287	115	119	12.0000
ddd:	chr19:49999594-49999824(+)$1	230	50	54	12.0000
::FF	chr1:36106924-36107221(-)$1	297	167	171	12.0000
FFcc	chr5:1801446-1801708(+)$1	262	22	26	12.0000
dddd	chr5:140026967-140027302(-)$1	335	43	47	12.0000
CCC{	chr6:144416512-144416800(-)$1	288	1	5	12.0000
cc22	chr8:126010673-126010976(+)$1	303	26	30	12.0000
c"""	chr6:27775504-27775784(-)$1	280	196	200	12.0000
gggg	chr11:5269438-5269750(-)$1	312	295	299	12.0000
a]cc	chr11:17099065-17099318(-)$1	253	170	174	12.0000
33cc	chr15:40331192-40331460(-)$1	268	73	77	12.0000
dlll	chr19:572492-572804(+)$1	312	195	199	12.0000
:EEE	chr6:26204757-26205049(+)$1	292	209	213	12.0000
qqqq	chr7:10979563-10979855(-)$1	292	36	40	12.0000
FFFN	chr11:63742045-63742316(+)$1	271	42	46	12.0000
::::	chr12:56510477-56510683(+)$1	206	58	62	12.0000
fffa	chr1:8934782-8935059(-)$1	277	250	254	12.0000
dddd	chr1:110950151-110950415(-)$1	264	150	154	12.0000
GGGG	chr6:75953335-75953601(-)$1	266	19	23	12.0000
{BBM	chr12:112846323-112846555(-)$1	232	3	7	12.0000
HHHH	chr19:49999624-49999828(+)$1	204	20	24	12.0000
^ddd	chr6:27775856-27776113(+)$1	257	24	28	12.0000
DDD}	chr19:36142034-36142264(+)$1	230	165	169	12.0000
DD{C	chr16:202762-203043(+)$1	281	6	10	12.0000
{BBL	chr10:75541713-75542002(+)$1	289	17	21	12.0000
peee	chrX:55052282-55052549(-)$1	267	127	131	12.0000
:ddd	chr10:7830042-7830320(+)$1	278	174	178	12.0000
#bbq	chr1:149858072-149858325(-)$1	253	40	44	12.0000
MEEE	chr9:113018606-113018926(-)$1	320	183	187	12.0000
:CCC	chr12:6643913-6644128(+)$1	215	60	64	12.0000
dddd	chr7:54825116-54825362(-)$1	246	106	110	12.0000
nnnc	chr12:131357028-131357263(+)$1	235	126	130	12.0000
ccca	chr6:26158312-26158602(+)$1	290	181	185	12.0000
[bbm	chr12:131356521-131356773(+)$1	252	113	117	12.0000
b###	chr11:63448939-63449226(+)$1	287	82	86	12.0000
JJJJ	chr1:19923404-19923696(+)$1	292	281	285	12.0000
ee]b	chr16:18800334-18800541(-)$1	207	99	103	12.0000
eeee	chr4:39460418-39460633(-)$1	215	19	23	12.0000
ceee	chr11:5290936-5291159(-)$1	223	78	82	12.0000
EEEE	chr2:98262431-98262750(+)$1	319	19	23	12.0000
[eee	chr6:26021825-26022085(+)$1	260	175	179	12.0000

#DB
((((	chr17:26902392-26902664(-)$1	1	8	12	12.0000
)).)	chr20:30193032-30193344(+)$1	1	140	144	12.0000
(((.	chr9:35072246-35072534(-)$1	1	49	53	12.0000
((((	chr15:66797025-66797283(-)$1	1	115	119	12.0000
)).)	chr16:18800285-18800534(-)$1	1	92	96	12.0000
.(((	chr1:228645377-228645637(-)$1	1	17	21	12.0000
.)))	chr1:33502293-33502576(-)$1	1	269	273	12.0000
((..	chr11:75110463-75110722(+)$1	1	44	48	12.0000
..))	chr1:45984588-45984827(-)$1	1	159	163	12.0000
(.((	chr1:110950106-110950351(-)$1	1	86	90	12.0000
.(((	chr11:118272322-118272533(+)$1	1	18	22	12.0000
((.(	chrX:77154866-77155152(+)$1	1	89	93	12.0000
)(((	chr8:74205736-74205964(-)$1	1	175	179	12.0000
))).	chr22:38902134-38902410(-)$1	1	11	15	12.0000
))..	chr20:60962566-60962796(+)$1	1	174	178	12.0000
.(((	chr12:57066704-57066950(-)$1	1	103	107	12.0000
(((.	chr6:27835150-27835448(-)$1	1	58	62	12.0000
((((	chr12:56510878-56511095(+)$1	1	21	25	12.0000
.(((	chr1:45478473-45478722(+)$1	1	53	57	12.0000
))..	chr6:26217077-26217341(+)$1	1	66	70	12.0000
((((	chr11:5290985-5291212(-)$1	1	131	135	12.0000
((..	chr12:57039581-57039850(-)$1	1	75	79	12.0000
((((	chr15:63449498-63449762(-)$1	1	32	36	12.0000
))))	chr11:67351833-67352041(+)$1	1	198	202	12.0000
....	chr14:50052926-50053207(-)$1	1	167	171	12.0000
..((	chr15:64385842-64386171(-)$1	1	271	275	12.0000
))).	chr7:22862287-22862557(-)$1	1	213	217	12.0000
((((	chr4:39460409-39460618(-)$1	1	4	8	12.0000
((((	chr7:75931945-75932194(+)$1	1	26	30	12.0000
((((	chr12:49524980-49525274(-)$1	1	58	62	12.0000
....	chr6:27860776-27861050(-)$1	1	17	21	12.0000
))).	chr6:27114793-27115052(+)$1	1	248	252	12.0000
...(	chr21:35287931-35288190(-)$1	1	181	185	12.0000
....	chr5:68462855-68463201(+)$1	1	29	33	12.0000
..((	chr12:6976647-6976905(+)$1	1	201	205	12.0000
.)))	chr6:27100350-27100637(-)$1	1	115	119	12.0000
))).	chr19:49999594-49999824(+)$1	1	50	54	12.0000
..((	chr1:36106924-36107221(-)$1	1	167	171	12.0000
((((	chr5:1801446-1801708(+)$1	1	22	26	12.0000
((((	chr5:140026967-140027302(-)$1	1	43	47	12.0000
(((.	chr6:144416512-144416800(-)$1	1	1	5	12.0000
))..	chr8:126010673-126010976(+)$1	1	26	30	12.0000
(...	chr6:27775504-27775784(-)$1	1	196	200	12.0000
((((	chr11:5269438-5269750(-)$1	1	295	299	12.0000
).))	chr11:17099065-17099318(-)$1	1	170	174	12.0000
..))	chr15:40331192-40331460(-)$1	1	73	77	12.0000
(...	chr19:572492-572804(+)$1	1	195	199	12.0000
.)))	chr6:26204757-26205049(+)$1	1	209	213	12.0000
....	chr7:10979563-10979855(-)$1	1	36	40	12.0000
(((.	chr11:63742045-63742316(+)$1	1	42	46	12.0000
....	chr12:56510477-56510683(+)$1	1	58	62	12.0000
))))	chr1:8934782-8935059(-)$1	1	250	254	12.0000
))))	chr1:110950151-110950415(-)$1	1	150	154	12.0000
((((	chr6:75953335-75953601(-)$1	1	19	23	12.0000
.((.	chr12:112846323-112846555(-)$1	1	3	7	12.0000
((((	chr19:49999624-49999828(+)$1	1	20	24	12.0000
.)))	chr6:27775856-27776113(+)$1	1	24	28	12.0000
))).	chr19:36142034-36142264(+)$1	1	165	169	12.0000
((.(	chr16:202762-203043(+)$1	1	6	10	12.0000
.((.	chr10:75541713-75542002(+)$1	1	17	21	12.0000
.)))	chrX:55052282-55052549(-)$1	1	127	131	12.0000
.(((	chr10:7830042-7830320(+)$1	1	174	178	12.0000
.((.	chr1:149858072-149858325(-)$1	1	40	44	12.0000
.(((	chr9:113018606-113018926(-)$1	1	183	187	12.0000
.(((	chr12:6643913-6644128(+)$1	1	60	64	12.0000
((((	chr7:54825116-54825362(-)$1	1	106	110	12.0000
...)	chr12:131357028-131357263(+)$1	1	126	130	12.0000
((((	chr6:26158312-26158602(+)$1	1	181	185	12.0000
.((.	chr12:131356521-131356773(+)$1	1	113	117	12.0000
(...	chr11:63448939-63449226(+)$1	1	82	86	12.0000
))))	chr1:19923404-19923696(+)$1	1	281	285	12.0000
)).)	chr16:18800334-18800541(-)$1	1	99	103	12.0000
))))	chr4:39460418-39460633(-)$1	1	19	23	12.0000
))))	chr11:5290936-5291159(-)$1	1	78	82	12.0000
((((	chr2:98262431-98262750(+)$1	1	19	23	12.0000
.(((	chr6:26021825-26022085(+)$1	1	175	179	12.0000

#PSSM
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	

#score	912.0000000000002
#seq	76
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_CDS_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
::ddddffffffeeeeemmmmeeeee88888888ffffff]dddd:::::GGGGGGG:eeeeeccca[ffffffooooooffffff]a]ccc]eeeeea[a[bb[cccmmmmccc]bb]a]affffff[bb(((((((((dddd[ggggggg!!dddd[bb[dddd[bb!!bbmmmmbb]bb]ddddbb]dddd]ggggggg]dddd22bb]ffffff::::GGGGGGG:	chr1:109289280-109289510(+)$1	230	0	230	690.0000

#DB
..(((((((((((((((....)))))........)))))).)))).....(((((((.(((((((((.((((((......)))))).).))).)))))(.(.((.(((....))).)).).)((((((.((.........((((.(((((((..((((.((.((((.((..((....)).)).)))))).)))).))))))).))))..)).))))))....))))))).	chr1:109289280-109289510(+)$1	1	0	230	690.0000

#PSSM
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	

#score	690.0
#seq	1
#width	230
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_CDS_m3_run2.nuc.txt

#NT
AGAAA	chr2:242276811-242277094(+)$1	283	141	146	15.0000
AGAAA	chr4:74320867-74321075(+)$1	208	184	189	15.0000
AGAAA	chr14:23239357-23239621(+)$1	264	77	82	15.0000
AGAAA	chr4:74320875-74321097(+)$1	222	176	181	15.0000
AGAAA	chr6:168319487-168319755(+)$1	268	74	79	15.0000
AGAAA	chr4:74275015-74275235(+)$1	220	22	27	15.0000
AGAAA	chr4:74269985-74270190(+)$1	205	141	146	15.0000
AGAAA	chr17:57917077-57917349(+)$1	272	53	58	15.0000
AGAAA	chr4:166418658-166418864(+)$1	206	85	90	15.0000
AGAAA	chr2:21231375-21231649(-)$1	274	51	56	15.0000
AGAAA	chr3:52723113-52723414(+)$1	301	76	81	15.0000
AGAAA	chr12:46755989-46756231(-)$1	242	43	48	15.0000
AGAAA	chr2:21233402-21233622(-)$1	220	171	176	15.0000
AGAAA	chr2:21224868-21225119(-)$1	251	37	42	15.0000
AGAAA	chr1:33252374-33252644(-)$1	270	8	13	15.0000
AGAAA	chr5:42804679-42804959(-)$1	280	43	48	15.0000
AGAAA	chr2:21231637-21231889(-)$1	252	147	152	15.0000
AGAAA	chr4:155533443-155533684(-)$1	241	198	203	15.0000
AGAAA	chr12:46756176-46756386(-)$1	210	119	124	15.0000
AGAAA	chr10:101595926-101596181(+)$1	255	87	92	15.0000
AGAAA	chr12:69746910-69747124(+)$1	214	32	37	15.0000
AGAAA	chr2:21229568-21229811(-)$1	243	2	7	15.0000
AGAAA	chr12:69746941-69747191(+)$1	250	1	6	15.0000
AGAAA	chr4:74321269-74321504(+)$1	235	201	206	15.0000
AGAAA	chr4:74303802-74304009(+)$1	207	29	34	15.0000
AGAAA	chr2:21228412-21228641(-)$1	229	199	204	15.0000
AGAAA	chr10:102710393-102710655(+)$1	262	198	203	15.0000
AGAAA	chr5:42800902-42801139(-)$1	237	134	139	15.0000
AGAAA	chr16:84214610-84214864(-)$1	254	127	132	15.0000
AGAAA	chr5:179046281-179046532(-)$1	251	235	240	15.0000
AGAAA	chr19:18390715-18390967(-)$1	252	211	216	15.0000
AGAAA	chr9:95013903-95014209(-)$1	306	77	82	15.0000
AGAAA	chr12:46758070-46758282(-)$1	212	153	158	15.0000
AGAAA	chr4:74269990-74270210(+)$1	220	136	141	15.0000
AGAAA	chr7:139824259-139824537(-)$1	278	232	237	15.0000
AGAAA	chr4:74275009-74275215(+)$1	206	28	33	15.0000
AGAAA	chr12:46760949-46761202(-)$1	253	12	17	15.0000
AGAAA	chr4:74301924-74302163(+)$1	239	121	126	15.0000
AGAAA	chr4:74303809-74304055(+)$1	246	22	27	15.0000
AGAAA	chr2:21229662-21229873(-)$1	211	64	69	15.0000
AGAAA	chr12:46756186-46756420(-)$1	234	153	158	15.0000
AGAAA	chr12:46756042-46756264(-)$1	222	76	81	15.0000
AGAAA	chr12:46757660-46757886(-)$1	226	208	213	15.0000
AGAAA	chr1:46733162-46733444(+)$1	282	195	200	15.0000
AGAAA	chr17:64208129-64208389(-)$1	260	35	40	15.0000
AGAAA	chr3:120363158-120363400(-)$1	242	25	30	15.0000
AGAAA	chr10:98292733-98293011(-)$1	278	194	199	15.0000
AGAAA	chr4:74321304-74321535(+)$1	231	166	171	15.0000
AGAAA	chr4:74269976-74270185(+)$1	209	150	155	15.0000
AGAAA	chr3:128634294-128634571(+)$1	277	114	119	15.0000
AGAAA	chr12:69746924-69747141(+)$1	217	18	23	15.0000
AGAAA	chr1:236703863-236704142(+)$1	279	52	57	15.0000
AGAAA	chr17:76200902-76201159(+)$1	257	184	189	15.0000
AGAAA	chr2:223773511-223773765(+)$1	254	125	130	15.0000
AGAAA	chr1:151237594-151237846(+)$1	252	78	83	15.0000
AGAAA	chr5:42807005-42807247(-)$1	242	63	68	15.0000
AGAAA	chr2:21229611-21229852(-)$1	241	43	48	15.0000

#otherMatches

#Struct PSSM
eeeee	chr4:74269934-74270160(+)$1	226	192	197	15.0000
ffnnn	chr2:242276811-242277094(+)$1	283	141	146	15.0000
mffff	chr4:74320867-74321075(+)$1	208	184	189	15.0000
errrr	chr14:23239357-23239621(+)$1	264	77	82	15.0000
mffff	chr4:74320875-74321097(+)$1	222	176	181	15.0000
oooff	chr6:168319487-168319755(+)$1	268	74	79	15.0000
%%hhh	chr4:74275015-74275235(+)$1	220	22	27	15.0000
eeeee	chr4:74269985-74270190(+)$1	205	141	146	15.0000
cc!!e	chr17:57917077-57917349(+)$1	272	53	58	15.0000
b5555	chr4:166418658-166418864(+)$1	206	85	90	15.0000
cc:::	chr2:21231375-21231649(-)$1	274	51	56	15.0000
f::::	chr3:52723113-52723414(+)$1	301	76	81	15.0000
:ffff	chr12:46755989-46756231(-)$1	242	43	48	15.0000
:::::	chr2:21233402-21233622(-)$1	220	171	176	15.0000
$$$$$	chr2:21224868-21225119(-)$1	251	37	42	15.0000
:::::	chr1:33252374-33252644(-)$1	270	8	13	15.0000
fffff	chr5:42804679-42804959(-)$1	280	43	48	15.0000
ggg:d	chr2:21231637-21231889(-)$1	252	147	152	15.0000
ppppp	chr4:155533443-155533684(-)$1	241	198	203	15.0000
===##	chr12:46756176-46756386(-)$1	210	119	124	15.0000
ttttt	chr10:101595926-101596181(+)$1	255	87	92	15.0000
GGGGc	chr12:69746910-69747124(+)$1	214	32	37	15.0000
:gggg	chr2:21229568-21229811(-)$1	243	2	7	15.0000
[bb[c	chr12:69746941-69747191(+)$1	250	1	6	15.0000
iiiii	chr4:74321269-74321504(+)$1	235	201	206	15.0000
ff"""	chr4:74303802-74304009(+)$1	207	29	34	15.0000
:GGGG	chr2:21228412-21228641(-)$1	229	199	204	15.0000
ggggg	chr10:102710393-102710655(+)$1	262	198	203	15.0000
gggss	chr5:42800902-42801139(-)$1	237	134	139	15.0000
CCC{E	chr16:84214610-84214864(-)$1	254	127	132	15.0000
???CC	chr5:179046281-179046532(-)$1	251	235	240	15.0000
fffff	chr19:18390715-18390967(-)$1	252	211	216	15.0000
ggggg	chr9:95013903-95014209(-)$1	306	77	82	15.0000
|||||	chr12:46758070-46758282(-)$1	212	153	158	15.0000
eeeee	chr4:74269990-74270210(+)$1	220	136	141	15.0000
ddddm	chr7:139824259-139824537(-)$1	278	232	237	15.0000
%%hhh	chr4:74275009-74275215(+)$1	206	28	33	15.0000
::eee	chr12:46760949-46761202(-)$1	253	12	17	15.0000
E::==	chr4:74301924-74302163(+)$1	239	121	126	15.0000
ff"""	chr4:74303809-74304055(+)$1	246	22	27	15.0000
[gggg	chr2:21229662-21229873(-)$1	211	64	69	15.0000
iii##	chr12:46756186-46756420(-)$1	234	153	158	15.0000
:ffff	chr12:46756042-46756264(-)$1	222	76	81	15.0000
eee::	chr12:46757660-46757886(-)$1	226	208	213	15.0000
gggg[	chr1:46733162-46733444(+)$1	282	195	200	15.0000
fffff	chr17:64208129-64208389(-)$1	260	35	40	15.0000
eeeee	chr3:120363158-120363400(-)$1	242	25	30	15.0000
cdddd	chr10:98292733-98293011(-)$1	278	194	199	15.0000
effff	chr4:74321304-74321535(+)$1	231	166	171	15.0000
eeeee	chr4:74269976-74270185(+)$1	209	150	155	15.0000
gmmmm	chr3:128634294-128634571(+)$1	277	114	119	15.0000
GGGGc	chr12:69746924-69747141(+)$1	217	18	23	15.0000
hhsss	chr1:236703863-236704142(+)$1	279	52	57	15.0000
dd333	chr17:76200902-76201159(+)$1	257	184	189	15.0000
3gggg	chr2:223773511-223773765(+)$1	254	125	130	15.0000
b####	chr1:151237594-151237846(+)$1	252	78	83	15.0000
dffff	chr5:42807005-42807247(-)$1	242	63	68	15.0000
[gggg	chr2:21229611-21229852(-)$1	241	43	48	15.0000

#DB
(((((	chr4:74269934-74270160(+)$1	1	192	197	15.0000
((...	chr2:242276811-242277094(+)$1	1	141	146	15.0000
.))))	chr4:74320867-74321075(+)$1	1	184	189	15.0000
(....	chr14:23239357-23239621(+)$1	1	77	82	15.0000
.))))	chr4:74320875-74321097(+)$1	1	176	181	15.0000
...))	chr6:168319487-168319755(+)$1	1	74	79	15.0000
..(((	chr4:74275015-74275235(+)$1	1	22	27	15.0000
(((((	chr4:74269985-74270190(+)$1	1	141	146	15.0000
((..(	chr17:57917077-57917349(+)$1	1	53	58	15.0000
)....	chr4:166418658-166418864(+)$1	1	85	90	15.0000
))...	chr2:21231375-21231649(-)$1	1	51	56	15.0000
)....	chr3:52723113-52723414(+)$1	1	76	81	15.0000
.((((	chr12:46755989-46756231(-)$1	1	43	48	15.0000
.....	chr2:21233402-21233622(-)$1	1	171	176	15.0000
.....	chr2:21224868-21225119(-)$1	1	37	42	15.0000
.....	chr1:33252374-33252644(-)$1	1	8	13	15.0000
(((((	chr5:42804679-42804959(-)$1	1	43	48	15.0000
))).(	chr2:21231637-21231889(-)$1	1	147	152	15.0000
.....	chr4:155533443-155533684(-)$1	1	198	203	15.0000
(((..	chr12:46756176-46756386(-)$1	1	119	124	15.0000
.....	chr10:101595926-101596181(+)$1	1	87	92	15.0000
(((((	chr12:69746910-69747124(+)$1	1	32	37	15.0000
.((((	chr2:21229568-21229811(-)$1	1	2	7	15.0000
.((.(	chr12:69746941-69747191(+)$1	1	1	6	15.0000
)))))	chr4:74321269-74321504(+)$1	1	201	206	15.0000
((...	chr4:74303802-74304009(+)$1	1	29	34	15.0000
.))))	chr2:21228412-21228641(-)$1	1	199	204	15.0000
(((((	chr10:102710393-102710655(+)$1	1	198	203	15.0000
(((..	chr5:42800902-42801139(-)$1	1	134	139	15.0000
(((.(	chr16:84214610-84214864(-)$1	1	127	132	15.0000
...))	chr5:179046281-179046532(-)$1	1	235	240	15.0000
)))))	chr19:18390715-18390967(-)$1	1	211	216	15.0000
(((((	chr9:95013903-95014209(-)$1	1	77	82	15.0000
.....	chr12:46758070-46758282(-)$1	1	153	158	15.0000
(((((	chr4:74269990-74270210(+)$1	1	136	141	15.0000
((((.	chr7:139824259-139824537(-)$1	1	232	237	15.0000
..(((	chr4:74275009-74275215(+)$1	1	28	33	15.0000
..(((	chr12:46760949-46761202(-)$1	1	12	17	15.0000
)..((	chr4:74301924-74302163(+)$1	1	121	126	15.0000
((...	chr4:74303809-74304055(+)$1	1	22	27	15.0000
.((((	chr2:21229662-21229873(-)$1	1	64	69	15.0000
(((..	chr12:46756186-46756420(-)$1	1	153	158	15.0000
.((((	chr12:46756042-46756264(-)$1	1	76	81	15.0000
)))..	chr12:46757660-46757886(-)$1	1	208	213	15.0000
((((.	chr1:46733162-46733444(+)$1	1	195	200	15.0000
(((((	chr17:64208129-64208389(-)$1	1	35	40	15.0000
(((((	chr3:120363158-120363400(-)$1	1	25	30	15.0000
)((((	chr10:98292733-98293011(-)$1	1	194	199	15.0000
)((((	chr4:74321304-74321535(+)$1	1	166	171	15.0000
(((((	chr4:74269976-74270185(+)$1	1	150	155	15.0000
(....	chr3:128634294-128634571(+)$1	1	114	119	15.0000
(((((	chr12:69746924-69747141(+)$1	1	18	23	15.0000
((...	chr1:236703863-236704142(+)$1	1	52	57	15.0000
))...	chr17:76200902-76201159(+)$1	1	184	189	15.0000
.))))	chr2:223773511-223773765(+)$1	1	125	130	15.0000
(....	chr1:151237594-151237846(+)$1	1	78	83	15.0000
)((((	chr5:42807005-42807247(-)$1	1	63	68	15.0000
.((((	chr2:21229611-21229852(-)$1	1	43	48	15.0000

#PSSM
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	

#score	870.0000000000001
#seq	58
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_UTR_m3_run1.nuc.txt

#NT
CCCUCCUAACCU	chr1:46713430-46713683(+)$1	253	96	108	15.8979
CCUUCCCUCCCA	chr6:32136382-32136627(-)$1	245	105	117	20.2857
CCCUGCCGCCCA	chr19:50818627-50818927(-)$1	300	225	237	16.9183
CCAUCCCUCCCC	chr2:68479205-68479500(-)$1	295	269	281	20.7959
CCUUCCCCCCCC	chr7:100172207-100172456(-)$1	249	47	59	17.7346
CCCUGCCUCCCA	chr19:4360701-4361019(-)$1	318	94	106	20.2857
CCCUCCAUCCCU	chr12:120653752-120654047(-)$1	295	72	84	22.0204
CCCUGCCGCCCU	chr11:65660317-65660590(-)$1	273	0	12	19.4693
CCCGCCCUCCGU	chr20:62152047-62152315(+)$1	268	9	21	16.8163
CCCGCCUUCCCU	chr12:132569252-132569538(+)$1	286	45	57	18.7551
CCCUGCAUCCCC	chr19:36110590-36110917(+)$1	327	96	108	17.6326
CCUUCCUUCCCU	chr19:36279310-36279603(+)$1	293	42	54	20.0816
CCCUCCCAACCC	chr4:77996802-77997132(-)$1	330	211	223	17.0204
CCCUCCUUCCAU	chr1:11863513-11863916(-)$1	403	154	166	18.1428
gccucccgcccu	chr12:53846038-53846264(+)$1	226	60	72	18.0408
CGCUCACUCCCU	chr3:183888816-183889106(+)$1	290	77	89	16.7142
ACCUCCCUGCCU	chr1:32661882-32662126(+)$1	244	110	122	17.6326
CCCUCCCUCCCU	chr1:27733085-27733314(-)$1	229	96	108	25.5918
CCCGCCUUCCCU	chr12:132569193-132569452(+)$1	259	104	116	18.7551
CCAGCCCUCCCU	chr5:175957491-175957749(-)$1	258	46	58	18.3469
CCCUGCCUCCCA	chr2:242694645-242695032(+)$1	387	58	70	20.2857
GCCUCCCUCCCC	chr7:100286352-100286607(-)$1	255	86	98	19.7755
cccucccucccu	chr1:1250896-1251182(-)$1	286	16	28	25.5918
CCCUCCUACCCU	chr3:15296778-15297091(+)$1	313	131	143	19.5714
CCUUCCCCACCU	chr19:38742411-38742748(-)$1	337	138	150	15.6938
CACUCCCGCCCU	chr20:48698530-48698856(-)$1	326	129	141	18.2448
cccuuccucccu	chr17:7154700-7155070(-)$1	370	79	91	22.0204
CCUUCCCUUCCC	chr19:4045298-4045582(-)$1	284	80	92	17.7346
CCGCCCCUCCCU	chr11:60899189-60899457(-)$1	268	110	122	17.8367
CCAUCCCUCCCU	chr3:14529762-14530116(+)$1	354	330	342	22.4285
CCCUCCCCUCCU	chr19:42734457-42734758(-)$1	301	110	122	18.6530
CCAUGCCUCCCU	chr17:47788031-47788326(-)$1	295	152	164	19.6734
CACUCCCUUCCC	chr11:47491246-47491576(-)$1	330	99	111	16.5102
CCCUCCCAUCCC	chrX:64960221-64960448(+)$1	227	25	37	17.2244
cacucccucucu	chr19:41836734-41837006(-)$1	272	251	263	17.0204
CCUUCCCAGCCU	chr5:175954579-175954876(-)$1	297	38	50	15.7959
CCGUCCCUCCCU	chr1:161274954-161275226(-)$1	272	114	126	22.2244
CCUUUCCUCCCC	chr17:4848924-4849217(-)$1	293	68	80	17.6326
CCCUGCCUCCCU	chr9:130883015-130883339(-)$1	324	142	154	22.8367
CUCUCCCUCCCC	chr17:8063180-8063461(-)$1	281	147	159	19.8775
CCUUCCUUCCCU	chr17:8063630-8063927(-)$1	297	22	34	20.0816
cccugcuucccA	chr12:57824511-57824825(-)$1	314	161	173	17.5306
ACCUCCUUCCCU	chr6:2960694-2960992(-)$1	298	107	119	18.6530
CCCUCCCUCUCC	chr14:69255954-69256234(-)$1	280	133	145	19.3673
UUCUCCCUCCCU	chr19:1394699-1394971(+)$1	272	5	17	17.3265
CCCUGCUUCCCC	chr1:27633981-27634235(+)$1	254	30	42	18.4489
CCCUGCCUCCCC	chr7:149470364-149470668(-)$1	304	207	219	21.2040
CGCUCCCUUCCU	chr21:34915548-34915821(+)$1	273	94	106	18.0408

#otherMatches

#Struct PSSM
::::::::::::	chr3:38455006-38455289(+)$1	283	146	158	19.7755
cccrrrrrrrrr	chr1:46713430-46713683(+)$1	253	96	108	15.8979
]eeeee333ddd	chr6:32136382-32136627(-)$1	245	105	117	20.2857
::::FFFFFF\\	chr19:50818627-50818927(-)$1	300	225	237	16.9183
777777ccc]bb	chr2:68479205-68479500(-)$1	295	269	281	20.7959
ffff:hhhhhhh	chr7:100172207-100172456(-)$1	249	47	59	17.7346
e"""bbpppppp	chr19:4360701-4361019(-)$1	318	94	106	20.2857
::::::::::::	chr12:120653752-120654047(-)$1	295	72	84	22.0204
::DDDD:fffff	chr11:65660317-65660590(-)$1	273	0	12	19.4693
JJJJJJJJ{CCC	chr20:62152047-62152315(+)$1	268	9	21	16.8163
::::::::::::	chr12:132569252-132569538(+)$1	286	45	57	18.7551
####cccnnnnn	chr19:36110590-36110917(+)$1	327	96	108	17.6326
ppphhhhhhhh:	chr19:36279310-36279603(+)$1	293	42	54	20.0816
eeeeebbnnnnn	chr4:77996802-77997132(-)$1	330	211	223	17.0204
nnccc:::::::	chr1:11863513-11863916(-)$1	403	154	166	18.1428
ccnnnnnccc::	chr12:53846038-53846264(+)$1	226	60	72	18.0408
h333bb::::::	chr3:183888816-183889106(+)$1	290	77	89	16.7142
doooooodddd:	chr1:32661882-32662126(+)$1	244	110	122	17.6326
EEEEEFFFFFF}	chr1:27733085-27733314(-)$1	229	96	108	25.5918
::::::::::::	chr12:132569193-132569452(+)$1	259	104	116	18.7551
:::ddddnnnnn	chr5:175957491-175957749(-)$1	258	46	58	18.3469
EEE{A{DDDDMM	chr2:242694645-242695032(+)$1	387	58	70	20.2857
DDDDDDDDEEEE	chr7:100286352-100286607(-)$1	255	86	98	19.7755
NNNBBTTTTTTT	chr1:1250896-1251182(-)$1	286	16	28	25.5918
::::::::::::	chr3:15296778-15297091(+)$1	313	131	143	19.5714
hhuuuuuuuuuu	chr19:38742411-38742748(-)$1	337	138	150	15.6938
B::CCCDDDDLL	chr20:48698530-48698856(-)$1	326	129	141	18.2448
^^^^^^^^^^^^	chr17:7154700-7155070(-)$1	370	79	91	22.0204
bb333bb]ccc:	chr19:4045298-4045582(-)$1	284	80	92	17.7346
::ddddqqqqqq	chr11:60899189-60899457(-)$1	268	110	122	17.8367
tttttttttfff	chr3:14529762-14530116(+)$1	354	330	342	22.4285
::::::::::dd	chr19:42734457-42734758(-)$1	301	110	122	18.6530
:::::eeeeeqq	chr17:47788031-47788326(-)$1	295	152	164	19.6734
>>>>>>>>>>>d	chr11:47491246-47491576(-)$1	330	99	111	16.5102
::IIIIIIIIIb	chrX:64960221-64960448(+)$1	227	25	37	17.2244
::::::::HHHH	chr19:41836734-41837006(-)$1	272	251	263	17.0204
::::::eeeee[	chr5:175954579-175954876(-)$1	297	38	50	15.7959
::::::::::::	chr1:161274954-161275226(-)$1	272	114	126	22.2244
::::::::::CC	chr17:4848924-4849217(-)$1	293	68	80	17.6326
ff[ccc"""ddd	chr9:130883015-130883339(-)$1	324	142	154	22.8367
a+++++++++++	chr17:8063180-8063461(-)$1	281	147	159	19.8775
GGGGGG::::::	chr17:8063630-8063927(-)$1	297	22	34	20.0816
GGDDDD::::::	chr12:57824511-57824825(-)$1	314	161	173	17.5306
h!!dddd^^^^^	chr6:2960694-2960992(-)$1	298	107	119	18.6530
d:::::::::::	chr14:69255954-69256234(-)$1	280	133	145	19.3673
c[ddddpppppp	chr19:1394699-1394971(+)$1	272	5	17	17.3265
::eeeeeeeeee	chr1:27633981-27634235(+)$1	254	30	42	18.4489
^^^^^^^^^^ee	chr7:149470364-149470668(-)$1	304	207	219	21.2040
YYDDDD::::::	chr21:34915548-34915821(+)$1	273	94	106	18.0408

#DB
............	chr3:38455006-38455289(+)$1	1	146	158	19.7755
(((.........	chr1:46713430-46713683(+)$1	1	96	108	15.8979
.)))))...)))	chr6:32136382-32136627(-)$1	1	105	117	20.2857
....))))))..	chr19:50818627-50818927(-)$1	1	225	237	16.9183
......))).))	chr2:68479205-68479500(-)$1	1	269	281	20.7959
)))).(((((((	chr7:100172207-100172456(-)$1	1	47	59	17.7346
(...((......	chr19:4360701-4361019(-)$1	1	94	106	20.2857
............	chr12:120653752-120654047(-)$1	1	72	84	22.0204
..((((.(((((	chr11:65660317-65660590(-)$1	1	0	12	19.4693
((((((((.(((	chr20:62152047-62152315(+)$1	1	9	21	16.8163
............	chr12:132569252-132569538(+)$1	1	45	57	18.7551
....(((.....	chr19:36110590-36110917(+)$1	1	96	108	17.6326
...)))))))).	chr19:36279310-36279603(+)$1	1	42	54	20.0816
)))))((.....	chr4:77996802-77997132(-)$1	1	211	223	17.0204
..))).......	chr1:11863513-11863916(-)$1	1	154	166	18.1428
((.....)))..	chr12:53846038-53846264(+)$1	1	60	72	18.0408
)...))......	chr3:183888816-183889106(+)$1	1	77	89	16.7142
(......)))).	chr1:32661882-32662126(+)$1	1	110	122	17.6326
))))))))))).	chr1:27733085-27733314(-)$1	1	96	108	25.5918
............	chr12:132569193-132569452(+)$1	1	104	116	18.7551
...((((.....	chr5:175957491-175957749(-)$1	1	46	58	18.3469
(((.(.((((..	chr2:242694645-242695032(+)$1	1	58	70	20.2857
((((((((((((	chr7:100286352-100286607(-)$1	1	86	98	19.7755
...((.......	chr1:1250896-1251182(-)$1	1	16	28	25.5918
............	chr3:15296778-15297091(+)$1	1	131	143	19.5714
((..........	chr19:38742411-38742748(-)$1	1	138	150	15.6938
)..(((((((..	chr20:48698530-48698856(-)$1	1	129	141	18.2448
............	chr17:7154700-7155070(-)$1	1	79	91	22.0204
))...)).))).	chr19:4045298-4045582(-)$1	1	80	92	17.7346
..((((......	chr11:60899189-60899457(-)$1	1	110	122	17.8367
.........)))	chr3:14529762-14530116(+)$1	1	330	342	22.4285
..........((	chr19:42734457-42734758(-)$1	1	110	122	18.6530
.....(((((..	chr17:47788031-47788326(-)$1	1	152	164	19.6734
...........)	chr11:47491246-47491576(-)$1	1	99	111	16.5102
..((((((((((	chrX:64960221-64960448(+)$1	1	25	37	17.2244
........))))	chr19:41836734-41837006(-)$1	1	251	263	17.0204
......(((((.	chr5:175954579-175954876(-)$1	1	38	50	15.7959
............	chr1:161274954-161275226(-)$1	1	114	126	22.2244
..........((	chr17:4848924-4849217(-)$1	1	68	80	17.6326
((.(((...(((	chr9:130883015-130883339(-)$1	1	142	154	22.8367
(...........	chr17:8063180-8063461(-)$1	1	147	159	19.8775
((((((......	chr17:8063630-8063927(-)$1	1	22	34	20.0816
))))))......	chr12:57824511-57824825(-)$1	1	161	173	17.5306
(..((((.....	chr6:2960694-2960992(-)$1	1	107	119	18.6530
)...........	chr14:69255954-69256234(-)$1	1	133	145	19.3673
(.((((......	chr19:1394699-1394971(+)$1	1	5	17	17.3265
..((((((((((	chr1:27633981-27634235(+)$1	1	30	42	18.4489
..........))	chr7:149470364-149470668(-)$1	1	207	219	21.2040
..))))......	chr21:34915548-34915821(+)$1	1	94	106	18.0408

#PSSM
C : 0.79	c : 0.08	A : 0.04	u : 0.02	g : 0.02	G : 0.02	U : 0.02	
C : 0.75	c : 0.10	G : 0.04	A : 0.04	U : 0.04	a : 0.02	
C : 0.59	U : 0.16	c : 0.12	A : 0.08	G : 0.04	
U : 0.77	u : 0.12	G : 0.08	C : 0.02	
C : 0.67	G : 0.18	c : 0.08	u : 0.02	U : 0.02	g : 0.02	
C : 0.85	c : 0.12	A : 0.02	
C : 0.65	U : 0.18	c : 0.10	A : 0.04	u : 0.02	
U : 0.65	u : 0.10	A : 0.10	G : 0.06	C : 0.06	g : 0.02	
C : 0.67	c : 0.12	U : 0.10	A : 0.06	G : 0.04	
C : 0.85	c : 0.10	u : 0.02	U : 0.02	
C : 0.83	c : 0.12	G : 0.02	A : 0.02	
U : 0.53	C : 0.26	A : 0.10	u : 0.08	c : 0.02	

#score	934.0000000000007
#seq	49
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_transcript_m3_run2.nuc.txt

#NT
UCUCUCUUU	chr7:129099534-129099794(+)$1	260	43	52	16.5283
uuucucuua	chr9:99609422-99609692(-)$1	270	216	225	17.0943
uuucuauuu	chr18:2719153-2719409(+)$1	256	28	37	16.7169
uuucuccuu	chr21:39445559-39445809(-)$1	250	104	113	16.7169
CUUCUCUUU	chrX:44766039-44766319(+)$1	280	102	111	16.6226
ugucucuuu	chr2:177174366-177174650(+)$1	284	18	27	16.5283
uuuuucuau	chr3:5189069-5189365(+)$1	296	68	77	15.2075
UCUUUCUUU	chr7:142656232-142656510(-)$1	278	152	161	15.3018
uuucucuug	chr7:50783978-50784252(-)$1	274	48	57	17.2830
uUGCUCUUU	chr7:107048274-107048621(-)$1	347	246	255	16.9056
uuuuucuuc	chr1:167965959-167966228(+)$1	269	105	114	16.0566
uuucucuuu	chr10:12052432-12052763(-)$1	331	102	111	20.9622
uuucucuug	chr15:68400415-68400706(+)$1	291	37	46	17.2830
UUCUUCUUU	chr17:15948064-15948317(-)$1	253	88	97	15.9622
uuuuucuuc	chr20:33647409-33647806(-)$1	397	53	62	16.0566
UUUCUCUUU	chr13:99205552-99205810(-)$1	258	148	157	20.9622
UUUCUCUUU	chr10:27465187-27465472(+)$1	285	33	42	20.9622
UUUCUCCUU	chr10:75781478-75781878(+)$1	400	46	55	16.7169
uuuuucuuu	chr10:74779772-74780029(-)$1	257	98	107	19.7358
UUUUUUUUU	chr2:85547322-85547584(-)$1	262	1	10	15.5849
uuuuucuuu	chr15:63804492-63804805(+)$1	313	126	135	19.7358
GUUCUCUUU	chr8:106480181-106480614(+)$1	433	197	206	16.6226
UUUCUCUUU	chr5:126359617-126359922(-)$1	305	170	179	20.9622
uucuucuuu	chr1:51851786-51852101(-)$1	315	102	111	15.9622
UUUUUCCUU	chr1:35840721-35841025(+)$1	304	100	109	15.4905
uuuuucuuu	chr2:122339689-122340019(-)$1	330	229	238	19.7358
uuucuccuu	chr2:27011965-27012232(+)$1	267	203	212	16.7169
uuguucuuu	chr1:113171735-113172007(+)$1	272	116	125	15.6792
UUUCUCUGU	chr20:34361270-34361545(+)$1	275	101	110	16.6226
ugucucuuu	chr8:130532260-130532521(-)$1	261	7	16	16.5283
uuugucuuu	chr19:4179239-4179628(-)$1	389	114	123	18.2264
uuccucuuu	chr2:54172470-54172797(-)$1	327	87	96	17.1886
guuuucuuu	chr4:68342813-68343085(-)$1	272	114	123	15.3962
UUUAUCUUU	chr9:94637879-94638188(-)$1	309	84	93	18.2264
uuucuuuuu	chr21:9951247-9951515(-)$1	268	202	211	16.8113
UUUCUAUUU	chrX:73047075-73047384(-)$1	309	87	96	16.7169
UUUCUCUGU	chr5:36910448-36910765(+)$1	317	96	105	16.6226
uuucucuug	chr14:35485498-35485839(+)$1	341	13	22	17.2830
uuuuucugu	chr2:242183146-242183425(-)$1	279	32	41	15.3962
UUUCUCUUC	chr16:85038288-85038574(-)$1	286	60	69	17.2830
UUCCUCUUU	chr20:3901943-3902236(+)$1	293	87	96	17.1886
uuauucuuu	chr5:53252932-53253207(-)$1	275	47	56	15.5849
uuucucuuc	chr8:92015918-92016200(-)$1	282	161	170	17.2830
UUUUUUUUU	chr9:94975113-94975433(-)$1	320	12	21	15.5849
uuucuguuu	chr17:6839032-6839296(-)$1	264	115	124	16.6226
uuuaucuuu	chrX:110944673-110944938(+)$1	265	166	175	18.2264
cuuuucuuu	chr2:38533194-38533457(-)$1	263	42	51	15.3962
auucucuuu	chr4:1386077-1386342(+)$1	265	186	195	16.5283
uucuucuuu	chr3:6595047-6595338(+)$1	291	189	198	15.9622
uuucucuug	chr16:47624930-47625192(+)$1	262	245	254	17.2830
UUUGUCUUU	chr9:94643938-94644240(-)$1	302	211	220	18.2264
UUUCUCUUA	chr3:9490996-9491302(+)$1	306	151	160	17.0943

#otherMatches

#Struct PSSM
ffffffvvv	chr18:9572360-9572636(-)$1	276	118	127	16.1509
eqqqqqqqq	chr7:129099534-129099794(+)$1	260	43	52	16.5283
hhh####ee	chr9:99609422-99609692(-)$1	270	216	225	17.0943
yyyyyyyyy	chr18:2719153-2719409(+)$1	256	28	37	16.7169
:::::::::	chr21:39445559-39445809(-)$1	250	104	113	16.7169
dd333bb33	chrX:44766039-44766319(+)$1	280	102	111	16.6226
CCC::dddd	chr2:177174366-177174650(+)$1	284	18	27	16.5283
:::::::::	chr3:5189069-5189365(+)$1	296	68	77	15.2075
[a"""ccco	chr7:142656232-142656510(-)$1	278	152	161	15.3018
::::::::c	chr7:50783978-50784252(-)$1	274	48	57	17.2830
}EEEEEZZZ	chr7:107048274-107048621(-)$1	347	246	255	16.9056
qqqqqqqcc	chr1:167965959-167966228(+)$1	269	105	114	16.0566
c55555fff	chr10:12052432-12052763(-)$1	331	102	111	20.9622
&&&&&&&bb	chr15:68400415-68400706(+)$1	291	37	46	17.2830
"ccc[a!!c	chr17:15948064-15948317(-)$1	253	88	97	15.9622
^^^^^^^^^	chr20:33647409-33647806(-)$1	397	53	62	16.0566
}DDDD::::	chr13:99205552-99205810(-)$1	258	148	157	20.9622
:::::::::	chr10:27465187-27465472(+)$1	285	33	42	20.9622
:::::::::	chr10:75781478-75781878(+)$1	400	46	55	16.7169
(((((((bb	chr10:74779772-74780029(-)$1	257	98	107	19.7358
:::::::::	chr2:85547322-85547584(-)$1	262	1	10	15.5849
:::::::::	chr15:63804492-63804805(+)$1	313	126	135	19.7358
qqccc::ff	chr8:106480181-106480614(+)$1	433	197	206	16.6226
c::::::::	chr5:126359617-126359922(-)$1	305	170	179	20.9622
::::::GGG	chr1:51851786-51852101(-)$1	315	102	111	15.9622
::JJJJJJJ	chr1:35840721-35841025(+)$1	304	100	109	15.4905
:::::::::	chr2:122339689-122340019(-)$1	330	229	238	19.7358
:::::::::	chr2:27011965-27012232(+)$1	267	203	212	16.7169
:::::dddd	chr1:113171735-113172007(+)$1	272	116	125	15.6792
qqqqqqqee	chr20:34361270-34361545(+)$1	275	101	110	16.6226
d^^^^^^^^	chr8:130532260-130532521(-)$1	261	7	16	16.5283
pppccc:::	chr19:4179239-4179628(-)$1	389	114	123	18.2264
ddd::::::	chr2:54172470-54172797(-)$1	327	87	96	17.1886
33ffffff:	chr4:68342813-68343085(-)$1	272	114	123	15.3962
frrrrrrrr	chr9:94637879-94638188(-)$1	309	84	93	18.2264
iiiiii>>>	chr21:9951247-9951515(-)$1	268	202	211	16.8113
llbb55555	chrX:73047075-73047384(-)$1	309	87	96	16.7169
3dddd22dd	chr5:36910448-36910765(+)$1	317	96	105	16.6226
qqqqqqqqc	chr14:35485498-35485839(+)$1	341	13	22	17.2830
d55555ddd	chr2:242183146-242183425(-)$1	279	32	41	15.3962
sssssssss	chr16:85038288-85038574(-)$1	286	60	69	17.2830
dd:::::::	chr20:3901943-3902236(+)$1	293	87	96	17.1886
=zzzzzzzz	chr5:53252932-53253207(-)$1	275	47	56	15.5849
:::::::::	chr8:92015918-92016200(-)$1	282	161	170	17.2830
ixxxxxxxx	chr9:94975113-94975433(-)$1	320	12	21	15.5849
eeeee[fff	chr17:6839032-6839296(-)$1	264	115	124	16.6226
sssssssss	chrX:110944673-110944938(+)$1	265	166	175	18.2264
ffff333ff	chr2:38533194-38533457(-)$1	263	42	51	15.3962
ffffffzzz	chr4:1386077-1386342(+)$1	265	186	195	16.5283
eee::::::	chr3:6595047-6595338(+)$1	291	189	198	15.9622
dddd22eee	chr16:47624930-47625192(+)$1	262	245	254	17.2830
eeeee::::	chr9:94643938-94644240(-)$1	302	211	220	18.2264
ddddbb[dd	chr3:9490996-9491302(+)$1	306	151	160	17.0943

#DB
((((((...	chr18:9572360-9572636(-)$1	1	118	127	16.1509
(........	chr7:129099534-129099794(+)$1	1	43	52	16.5283
(((....((	chr9:99609422-99609692(-)$1	1	216	225	17.0943
.........	chr18:2719153-2719409(+)$1	1	28	37	16.7169
.........	chr21:39445559-39445809(-)$1	1	104	113	16.7169
))...))..	chrX:44766039-44766319(+)$1	1	102	111	16.6226
(((..((((	chr2:177174366-177174650(+)$1	1	18	27	16.5283
.........	chr3:5189069-5189365(+)$1	1	68	77	15.2075
.(...(((.	chr7:142656232-142656510(-)$1	1	152	161	15.3018
........(	chr7:50783978-50784252(-)$1	1	48	57	17.2830
.)))))...	chr7:107048274-107048621(-)$1	1	246	255	16.9056
.......))	chr1:167965959-167966228(+)$1	1	105	114	16.0566
).....)))	chr10:12052432-12052763(-)$1	1	102	111	20.9622
.......((	chr15:68400415-68400706(+)$1	1	37	46	17.2830
.(((.(..(	chr17:15948064-15948317(-)$1	1	88	97	15.9622
.........	chr20:33647409-33647806(-)$1	1	53	62	16.0566
.))))....	chr13:99205552-99205810(-)$1	1	148	157	20.9622
.........	chr10:27465187-27465472(+)$1	1	33	42	20.9622
.........	chr10:75781478-75781878(+)$1	1	46	55	16.7169
.......((	chr10:74779772-74780029(-)$1	1	98	107	19.7358
.........	chr2:85547322-85547584(-)$1	1	1	10	15.5849
.........	chr15:63804492-63804805(+)$1	1	126	135	19.7358
..)))..((	chr8:106480181-106480614(+)$1	1	197	206	16.6226
)........	chr5:126359617-126359922(-)$1	1	170	179	20.9622
......(((	chr1:51851786-51852101(-)$1	1	102	111	15.9622
..(((((((	chr1:35840721-35841025(+)$1	1	100	109	15.4905
.........	chr2:122339689-122340019(-)$1	1	229	238	19.7358
.........	chr2:27011965-27012232(+)$1	1	203	212	16.7169
.....((((	chr1:113171735-113172007(+)$1	1	116	125	15.6792
.......))	chr20:34361270-34361545(+)$1	1	101	110	16.6226
(........	chr8:130532260-130532521(-)$1	1	7	16	16.5283
...)))...	chr19:4179239-4179628(-)$1	1	114	123	18.2264
)))......	chr2:54172470-54172797(-)$1	1	87	96	17.1886
..)))))).	chr4:68342813-68343085(-)$1	1	114	123	15.3962
(........	chr9:94637879-94638188(-)$1	1	84	93	18.2264
))))))...	chr21:9951247-9951515(-)$1	1	202	211	16.8113
..)).....	chrX:73047075-73047384(-)$1	1	87	96	16.7169
.))))..))	chr5:36910448-36910765(+)$1	1	96	105	16.6226
........)	chr14:35485498-35485839(+)$1	1	13	22	17.2830
).....)))	chr2:242183146-242183425(-)$1	1	32	41	15.3962
.........	chr16:85038288-85038574(-)$1	1	60	69	17.2830
)).......	chr20:3901943-3902236(+)$1	1	87	96	17.1886
(........	chr5:53252932-53253207(-)$1	1	47	56	15.5849
.........	chr8:92015918-92016200(-)$1	1	161	170	17.2830
(........	chr9:94975113-94975433(-)$1	1	12	21	15.5849
(((((.(((	chr17:6839032-6839296(-)$1	1	115	124	16.6226
.........	chrX:110944673-110944938(+)$1	1	166	175	18.2264
))))...))	chr2:38533194-38533457(-)$1	1	42	51	15.3962
((((((...	chr4:1386077-1386342(+)$1	1	186	195	16.5283
)))......	chr3:6595047-6595338(+)$1	1	189	198	15.9622
))))..)))	chr16:47624930-47625192(+)$1	1	245	254	17.2830
)))))....	chr9:94643938-94644240(-)$1	1	211	220	18.2264
((((((.((	chr3:9490996-9491302(+)$1	1	151	160	17.0943

#PSSM
u : 0.54	U : 0.35	C : 0.01	G : 0.01	g : 0.01	c : 0.01	a : 0.01	
u : 0.54	U : 0.37	C : 0.03	g : 0.03	
u : 0.49	U : 0.35	c : 0.05	C : 0.03	G : 0.01	g : 0.01	a : 0.01	
c : 0.30	C : 0.28	u : 0.24	U : 0.09	g : 0.01	A : 0.01	a : 0.01	G : 0.01	
u : 0.58	U : 0.39	C : 0.01	
c : 0.52	C : 0.35	U : 0.03	a : 0.01	u : 0.01	A : 0.01	g : 0.01	
u : 0.54	U : 0.37	c : 0.03	C : 0.03	
u : 0.54	U : 0.37	G : 0.03	a : 0.01	g : 0.01	
u : 0.43	U : 0.37	g : 0.07	c : 0.05	a : 0.01	C : 0.01	A : 0.01	

#score	905.5283018867918
#seq	53
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_UTR_m3_run2.nuc.txt

#NT
GCUCGGGC	chr9:138902223-138902476(-)$1	253	242	250	15.5384
GCCCGGGG	chr12:123755384-123755627(-)$1	243	124	132	15.7692
guccgggc	chr2:231578199-231578438(+)$1	239	52	60	15.5384
GCCCUGGC	chr16:85644934-85645232(+)$1	298	5	13	14.9999
GCCCGGGA	chr2:74667572-74667895(-)$1	323	123	131	15.6153
GCCUGGGC	chr10:102761381-102761665(+)$1	284	25	33	15.4615
GCCCGGCC	chr7:5460710-5460980(-)$1	270	231	239	14.9999
GCCCGCGC	chr2:95825194-95825457(-)$1	263	175	183	15.3846
GCGCGGGC	chr17:27224493-27224777(-)$1	284	57	65	15.9999
GCCCGGGG	chr12:53443669-53443958(-)$1	289	43	51	15.7692
GCCCGGGA	chr20:62688686-62689000(+)$1	314	252	260	15.6153
GGCCGGGC	chr6:149639327-149639627(+)$1	300	52	60	15.7692
GCCCGGGU	chr16:4661246-4661498(-)$1	252	42	50	15.5384
GCCCGCGC	chr17:74380176-74380436(+)$1	260	179	187	15.3846
GCCCGGGC	chr2:174828659-174828909(-)$1	250	185	193	19.6153
gcccgggc	chr2:106361296-106361576(+)$1	280	141	149	19.6153
GCCCAGGC	chr20:62338577-62338855(-)$1	278	30	38	14.9999
GCCCGGGC	chr9:139702477-139702751(+)$1	274	143	151	19.6153
gcccgcgc	chr17:25783615-25783884(+)$1	269	3	11	15.3846
CCCCGGGC	chr19:42788700-42788952(+)$1	252	54	62	15.7692
gcccgggc	chr10:13389205-13389441(-)$1	236	13	21	19.6153
GCCCCGGC	chr7:127670344-127670597(+)$1	253	154	162	15.0769
GCCAGGGC	chr4:1340969-1341207(+)$1	238	134	142	15.5384
GGCCGGGC	chr16:75284635-75284917(-)$1	282	6	14	15.7692
GGCCGGGC	chr8:12611466-12611771(-)$1	305	30	38	15.7692
GCCGGGGC	chr22:37415194-37415547(-)$1	353	73	81	15.3076
GCCUGGGC	chr20:36155827-36156087(-)$1	260	77	85	15.4615
GGCCGGGC	chr12:56633327-56633582(-)$1	255	138	146	15.7692
ccccgggc	chr19:1104352-1104652(+)$1	300	238	246	15.7692
GUCCGGGC	chr17:73997266-73997555(+)$1	289	17	25	15.5384
GCGCGGGC	chr8:125384395-125384645(-)$1	250	92	100	15.9999
GCCCGCGC	chr1:202776256-202776489(-)$1	233	42	50	15.3846
GCCUGGGC	chr12:31478545-31478789(-)$1	244	104	112	15.4615
GCCCGGUC	chr9:115095171-115095474(-)$1	303	1	9	14.9230
GCCCGGGG	chr7:150777526-150777794(-)$1	268	9	17	15.7692
GCCCCGGC	chr3:195622227-195622533(-)$1	306	27	35	15.0769
CCCCGGGC	chr13:28713103-28713375(+)$1	272	23	31	15.7692
UCCCGGGC	chr16:66639186-66639454(+)$1	268	20	28	15.3076
CCCCGGGC	chr8:71314691-71314933(-)$1	242	63	71	15.7692
GCCCgggc	chr17:55333773-55334048(+)$1	275	202	210	19.6153
GCCAGGGC	chr19:3544138-3544399(-)$1	261	60	68	15.5384
GCUCGGGC	chr2:231577502-231577816(+)$1	314	76	84	15.5384
GUCCGGGC	chr4:187644833-187645149(-)$1	316	1	9	15.5384
CCCCGGGC	chr1:2160041-2160332(+)$1	291	6	14	15.7692
GCGCGGGC	chrX:20284813-20285058(-)$1	245	82	90	15.9999
GCCCGGGC	chr1:90308845-90309129(+)$1	284	143	151	19.6153
CCCCGGGC	chr7:150777594-150777900(-)$1	306	74	82	15.7692
GCCAGGGC	chr6:43028058-43028332(+)$1	274	260	268	15.5384
gcgcgggc	chr3:52567648-52567895(-)$1	247	113	121	15.9999
GCCCGGCC	chr16:48419015-48419277(-)$1	262	172	180	14.9999
gcgcgggc	chr22:41488123-41488366(+)$1	243	156	164	15.9999
GCGCGGGC	chr3:127872406-127872710(+)$1	304	13	21	15.9999
GCCCGGGC	chr16:75285396-75285679(-)$1	283	240	248	19.6153
CCCCGGGC	chr16:2029107-2029382(+)$1	275	126	134	15.7692
ggccgggc	chr19:42788118-42788373(+)$1	255	8	16	15.7692
GGCCGGGC	chr12:124457863-124458186(+)$1	323	49	57	15.7692
GCGCGGGC	chr12:122238354-122238571(-)$1	217	106	114	15.9999
GCCCGGGU	chr17:46178146-46178464(-)$1	318	114	122	15.5384
GCGCGGGC	chr11:849711-849955(+)$1	244	131	139	15.9999
GCCAGGGC	chr1:16450959-16451215(-)$1	256	130	138	15.5384
GCCCGGGC	chr20:25370620-25370884(-)$1	264	245	253	19.6153
gcccgcgc	chr7:752076-752351(-)$1	275	136	144	15.3846
GCCCGGGG	chr3:196729536-196729796(-)$1	260	148	156	15.7692
GCCCGGGA	chr3:98451462-98451714(+)$1	252	88	96	15.6153

#otherMatches

#Struct PSSM
ff!!dddd	chr22:41487804-41488084(+)$1	280	142	150	15.7692
JJJJJJJ:	chr9:138902223-138902476(-)$1	253	242	250	15.5384
eeeebb]d	chr12:123755384-123755627(-)$1	243	124	132	15.7692
a]ddddee	chr2:231578199-231578438(+)$1	239	52	60	15.5384
EEEEEfff	chr16:85644934-85645232(+)$1	298	5	13	14.9999
eeee[bb!	chr2:74667572-74667895(-)$1	323	123	131	15.6153
dddd[a[e	chr10:102761381-102761665(+)$1	284	25	33	15.4615
JJJJJJJJ	chr7:5460710-5460980(-)$1	270	231	239	14.9999
EEEE}EEE	chr2:95825194-95825457(-)$1	263	175	183	15.3846
bbmmmmbb	chr17:27224493-27224777(-)$1	284	57	65	15.9999
dddd]bb=	chr12:53443669-53443958(-)$1	289	43	51	15.7692
dddd]ddd	chr20:62688686-62689000(+)$1	314	252	260	15.6153
CCC{FFFF	chr6:149639327-149639627(+)$1	300	52	60	15.7692
GGGGGGG{	chr16:4661246-4661498(-)$1	252	42	50	15.5384
ff22eeee	chr17:74380176-74380436(+)$1	260	179	187	15.3846
mmmmeeee	chr2:174828659-174828909(-)$1	250	185	193	19.6153
====GGGG	chr2:106361296-106361576(+)$1	280	141	149	19.6153
FFFFFF{D	chr20:62338577-62338855(-)$1	278	30	38	14.9999
CCC}HHHH	chr9:139702477-139702751(+)$1	274	143	151	19.6153
!!eeeeed	chr17:25783615-25783884(+)$1	269	3	11	15.3846
ffffGGGG	chr19:42788700-42788952(+)$1	252	54	62	15.7692
ffffffnn	chr10:13389205-13389441(-)$1	236	13	21	19.6153
eeeee!!b	chr7:127670344-127670597(+)$1	253	154	162	15.0769
mmdddd33	chr4:1340969-1341207(+)$1	238	134	142	15.5384
HHHHDDDD	chr16:75284635-75284917(-)$1	282	6	14	15.7692
FKKFFFFF	chr8:12611466-12611771(-)$1	305	30	38	15.7692
EEE{DDDD	chr22:37415194-37415547(-)$1	353	73	81	15.3076
[affffff	chr20:36155827-36156087(-)$1	260	77	85	15.4615
ff333eee	chr12:56633327-56633582(-)$1	255	138	146	15.7692
iiiiDDDD	chr19:1104352-1104652(+)$1	300	238	246	15.7692
dddd[a[e	chr17:73997266-73997555(+)$1	289	17	25	15.5384
dddddddd	chr8:125384395-125384645(-)$1	250	92	100	15.9999
FFF:cccq	chr1:202776256-202776489(-)$1	233	42	50	15.3846
dddd[ccc	chr12:31478545-31478789(-)$1	244	104	112	15.4615
EEEEE{A{	chr9:115095171-115095474(-)$1	303	1	9	14.9230
JJJJJJJJ	chr7:150777526-150777794(-)$1	268	9	17	15.7692
[eeeee[a	chr3:195622227-195622533(-)$1	306	27	35	15.0769
hhhhhhh[	chr13:28713103-28713375(+)$1	272	23	31	15.7692
:eeeee[e	chr16:66639186-66639454(+)$1	268	20	28	15.3076
eeeeemmm	chr8:71314691-71314933(-)$1	242	63	71	15.7692
fff]ffff	chr17:55333773-55334048(+)$1	275	202	210	19.6153
cJJJJJJJ	chr19:3544138-3544399(-)$1	261	60	68	15.5384
ff[bb[ee	chr2:231577502-231577816(+)$1	314	76	84	15.5384
eeeennnn	chr4:187644833-187645149(-)$1	316	1	9	15.5384
gggggg[a	chr1:2160041-2160332(+)$1	291	6	14	15.7692
dd]ddddg	chrX:20284813-20285058(-)$1	245	82	90	15.9999
dddbb]cc	chr1:90308845-90309129(+)$1	284	143	151	19.6153
========	chr7:150777594-150777900(-)$1	306	74	82	15.7692
hhhhhhhh	chr6:43028058-43028332(+)$1	274	260	268	15.5384
f[a[eeee	chr3:52567648-52567895(-)$1	247	113	121	15.9999
eeeee[dd	chr16:48419015-48419277(-)$1	262	172	180	14.9999
fff]a]a]	chr22:41488123-41488366(+)$1	243	156	164	15.9999
cca[bbbb	chr3:127872406-127872710(+)$1	304	13	21	15.9999
gggCCC}D	chr16:75285396-75285679(-)$1	283	240	248	19.6153
mcccffff	chr16:2029107-2029382(+)$1	275	126	134	15.7692
mmccc]bb	chr19:42788118-42788373(+)$1	255	8	16	15.7692
!!bb[ddd	chr12:124457863-124458186(+)$1	323	49	57	15.7692
gg[ccc[a	chr12:122238354-122238571(-)$1	217	106	114	15.9999
eeee::::	chr17:46178146-46178464(-)$1	318	114	122	15.5384
eeee333b	chr11:849711-849955(+)$1	244	131	139	15.9999
EEEEE~~~	chr1:16450959-16451215(-)$1	256	130	138	15.5384
ffffmmmm	chr20:25370620-25370884(-)$1	264	245	253	19.6153
fffffddd	chr7:752076-752351(-)$1	275	136	144	15.3846
ffffdddd	chr3:196729536-196729796(-)$1	260	148	156	15.7692
ddddpppp	chr3:98451462-98451714(+)$1	252	88	96	15.6153

#DB
((..((((	chr22:41487804-41488084(+)$1	1	142	150	15.7692
))))))).	chr9:138902223-138902476(-)$1	1	242	250	15.5384
)))))).)	chr12:123755384-123755627(-)$1	1	124	132	15.7692
).))))((	chr2:231578199-231578438(+)$1	1	52	60	15.5384
((((((((	chr16:85644934-85645232(+)$1	1	5	13	14.9999
((((.((.	chr2:74667572-74667895(-)$1	1	123	131	15.6153
((((.(.(	chr10:102761381-102761665(+)$1	1	25	33	15.4615
))))))))	chr7:5460710-5460980(-)$1	1	231	239	14.9999
)))).)))	chr2:95825194-95825457(-)$1	1	175	183	15.3846
((....))	chr17:27224493-27224777(-)$1	1	57	65	15.9999
)))).))(	chr12:53443669-53443958(-)$1	1	43	51	15.7692
)))).)))	chr20:62688686-62689000(+)$1	1	252	260	15.6153
(((.((((	chr6:149639327-149639627(+)$1	1	52	60	15.7692
(((((((.	chr16:4661246-4661498(-)$1	1	42	50	15.5384
))..))))	chr17:74380176-74380436(+)$1	1	179	187	15.3846
....))))	chr2:174828659-174828909(-)$1	1	185	193	19.6153
))))((((	chr2:106361296-106361576(+)$1	1	141	149	19.6153
((((((.(	chr20:62338577-62338855(-)$1	1	30	38	14.9999
))).))))	chr9:139702477-139702751(+)$1	1	143	151	19.6153
..((((((	chr17:25783615-25783884(+)$1	1	3	11	15.3846
))))((((	chr19:42788700-42788952(+)$1	1	54	62	15.7692
((((((..	chr10:13389205-13389441(-)$1	1	13	21	19.6153
(((((..(	chr7:127670344-127670597(+)$1	1	154	162	15.0769
..))))..	chr4:1340969-1341207(+)$1	1	134	142	15.5384
((((((((	chr16:75284635-75284917(-)$1	1	6	14	15.7692
(..(((((	chr8:12611466-12611771(-)$1	1	30	38	15.7692
(((.((((	chr22:37415194-37415547(-)$1	1	73	81	15.3076
.(((((((	chr20:36155827-36156087(-)$1	1	77	85	15.4615
))...)))	chr12:56633327-56633582(-)$1	1	138	146	15.7692
))))))))	chr19:1104352-1104652(+)$1	1	238	246	15.7692
((((.(.(	chr17:73997266-73997555(+)$1	1	17	25	15.5384
((((((((	chr8:125384395-125384645(-)$1	1	92	100	15.9999
(((.(((.	chr1:202776256-202776489(-)$1	1	42	50	15.3846
((((.(((	chr12:31478545-31478789(-)$1	1	104	112	15.4615
(((((.(.	chr9:115095171-115095474(-)$1	1	1	9	14.9230
((((((((	chr7:150777526-150777794(-)$1	1	9	17	15.7692
.(((((.(	chr3:195622227-195622533(-)$1	1	27	35	15.0769
(((((((.	chr13:28713103-28713375(+)$1	1	23	31	15.7692
.(((((.(	chr16:66639186-66639454(+)$1	1	20	28	15.3076
(((((...	chr8:71314691-71314933(-)$1	1	63	71	15.7692
))).))))	chr17:55333773-55334048(+)$1	1	202	210	19.6153
)(((((((	chr19:3544138-3544399(-)$1	1	60	68	15.5384
((.((.((	chr2:231577502-231577816(+)$1	1	76	84	15.5384
((((....	chr4:187644833-187645149(-)$1	1	1	9	15.5384
((((((.(	chr1:2160041-2160332(+)$1	1	6	14	15.7692
)).)))))	chrX:20284813-20285058(-)$1	1	82	90	15.9999
))))).))	chr1:90308845-90309129(+)$1	1	143	151	19.6153
((((((((	chr7:150777594-150777900(-)$1	1	74	82	15.7692
))))))))	chr6:43028058-43028332(+)$1	1	260	268	15.5384
(.(.((((	chr3:52567648-52567895(-)$1	1	113	121	15.9999
(((((.((	chr16:48419015-48419277(-)$1	1	172	180	14.9999
))).).).	chr22:41488123-41488366(+)$1	1	156	164	15.9999
(((.((((	chr3:127872406-127872710(+)$1	1	13	21	15.9999
)))))).)	chr16:75285396-75285679(-)$1	1	240	248	19.6153
.)))))))	chr16:2029107-2029382(+)$1	1	126	134	15.7692
..))).))	chr19:42788118-42788373(+)$1	1	8	16	15.7692
..((.(((	chr12:124457863-124458186(+)$1	1	49	57	15.7692
((.(((.(	chr12:122238354-122238571(-)$1	1	106	114	15.9999
))))....	chr17:46178146-46178464(-)$1	1	114	122	15.5384
))))...)	chr11:849711-849955(+)$1	1	131	139	15.9999
)))))...	chr1:16450959-16451215(-)$1	1	130	138	15.5384
((((....	chr20:25370620-25370884(-)$1	1	245	253	19.6153
)))))(((	chr7:752076-752351(-)$1	1	136	144	15.3846
))))((((	chr3:196729536-196729796(-)$1	1	148	156	15.7692
((((....	chr3:98451462-98451714(+)$1	1	88	96	15.6153

#PSSM
G : 0.75	g : 0.12	C : 0.09	c : 0.01	U : 0.01	
C : 0.75	c : 0.10	G : 0.07	U : 0.03	u : 0.01	g : 0.01	
C : 0.73	c : 0.10	G : 0.09	U : 0.03	g : 0.03	
C : 0.73	c : 0.13	A : 0.06	U : 0.04	G : 0.01	
G : 0.78	g : 0.15	C : 0.03	U : 0.01	A : 0.01	
G : 0.79	g : 0.12	C : 0.04	c : 0.03	
G : 0.79	g : 0.15	C : 0.03	U : 0.01	
C : 0.69	c : 0.15	G : 0.07	A : 0.04	U : 0.03	

#score	1045.5384615384608
#seq	65
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_CDS_m3_run2.nuc.txt

#NT
GUCCCUG	chr20:257241-257552(-)$1	311	142	149	13.3684
GGCCCUU	chrX:153178614-153178873(-)$1	259	188	195	12.7105
GGCCCUG	chr9:139904698-139904994(-)$1	296	17	24	17.1842
ggcgcug	chr17:1552191-1552470(-)$1	279	25	32	12.9736
GGGCCUG	chr7:100283494-100283744(-)$1	250	135	142	13.1710
AGCCCUG	chr9:139564580-139564835(+)$1	255	208	215	13.1052
GGCACUG	chr9:139728167-139728449(+)$1	282	141	148	13.0394
GGCACUG	chr22:50695502-50695867(-)$1	365	67	74	13.0394
AGCCCUG	chr9:139563976-139564202(+)$1	226	109	116	13.1052
GGCUCUG	chr16:28847498-28847748(+)$1	250	198	205	13.1710
GGCCCGG	chr11:61643981-61644283(-)$1	302	144	151	13.1052
GGCCCUG	chr1:1234633-1234972(-)$1	339	261	268	17.1842
GGUCCUG	chr8:145111219-145111439(-)$1	220	158	165	13.3026
GGCCCUG	chr3:49049846-49050119(+)$1	273	227	234	17.1842
GACCCUG	chr1:11854320-11854584(-)$1	264	190	197	13.3026
GGCCCCG	chr7:100171875-100172095(-)$1	220	157	164	13.5000
GACCCUG	chr9:138392524-138392902(+)$1	378	93	100	13.3026
ggccccg	chr11:64121401-64121690(+)$1	289	115	122	13.5000
GGCCCUG	chr21:46912889-46913211(+)$1	322	64	71	17.1842
ggCCCCG	chr11:376973-377233(+)$1	260	108	115	13.5000
GGCCCUG	chr22:38211219-38211542(+)$1	323	268	275	17.1842
GUCCCUG	chr11:803521-803795(-)$1	274	75	82	13.3684
GGGCCUG	chr16:89760411-89760712(+)$1	301	33	40	13.1710
GGCCCUG	chr4:994635-994945(+)$1	310	155	162	17.1842
GACCCUG	chr16:1498947-1499213(-)$1	266	68	75	13.3026
GGCCCUG	chr6:33179056-33179343(+)$1	287	11	18	17.1842
AGCCCUG	chr6:31938137-31938452(-)$1	315	41	48	13.1052
GGCCCAG	chr1:155294916-155295267(+)$1	351	189	196	13.1052
GGCCCUG	chr16:2867610-2867909(+)$1	299	14	21	17.1842
AGCCCUG	chrX:153668564-153668864(+)$1	300	168	175	13.1052
GGCCCUG	chr17:79180507-79180823(-)$1	316	247	254	17.1842
AGCCCUG	chr22:20073734-20073981(+)$1	247	208	215	13.1052
GGCCCCG	chr4:1804534-1804796(+)$1	262	245	252	13.5000
GGCUCUG	chr1:1019485-1019788(-)$1	303	148	155	13.1710
CGCCCUG	chr7:100170637-100170907(-)$1	270	129	136	12.8421
ggcccug	chr9:80646036-80646322(-)$1	286	1	8	17.1842
GGCCCUG	chr8:145140333-145140595(+)$1	262	25	32	17.1842
GGCCCCG	chr8:144917434-144917736(-)$1	302	15	22	13.5000
GGCCCUG	chr11:290684-290958(+)$1	274	173	180	17.1842
GUCCCUG	chr19:10907871-10908212(+)$1	341	138	145	13.3684
GGCUCUG	chr19:17320974-17321247(+)$1	273	44	51	13.1710
GACCCUG	chr15:75650848-75651135(-)$1	287	200	207	13.3026
GGCCCUG	chr5:176916978-176917312(-)$1	334	145	152	17.1842
ggcgcug	chr19:10406918-10407213(+)$1	295	139	146	12.9736
GCCCCUG	chr17:72768073-72768344(-)$1	271	126	133	13.3026
GGCCCUU	chr7:72718301-72718580(-)$1	279	126	133	12.7105
GGUCCUG	chr19:1012228-1012485(-)$1	257	166	173	13.3026
GGCCCCG	chr21:46281420-46281753(-)$1	333	291	298	13.5000
GCCCCUG	chr20:3735047-3735375(-)$1	328	191	198	13.3026
ggccccg	chr11:64121490-64121757(+)$1	267	26	33	13.5000
CGCCCUG	chr8:145107039-145107286(-)$1	247	14	21	12.8421
GGACCUG	chr16:89758116-89758368(+)$1	252	127	134	12.9736
GUCCCUG	chr6:91254227-91254513(-)$1	286	221	228	13.3684
ggccccg	chr9:139734719-139734982(+)$1	263	206	213	13.5000
AGCCCUG	chr22:20073905-20074197(+)$1	292	37	44	13.1052
GCCCCUG	chr17:80016281-80016563(-)$1	282	70	77	13.3026
GGUCCUG	chr19:1012285-1012544(-)$1	259	225	232	13.3026
GUCCCUG	chr16:841749-841987(+)$1	238	29	36	13.3684
GGCCCUG	chr3:50223416-50223827(+)$1	411	212	219	17.1842
GGUCCUG	chr11:67810671-67810971(+)$1	300	10	17	13.3026
GGUCCUG	chr19:1012069-1012340(-)$1	271	21	28	13.3026
GGCCCUU	chr3:52561265-52561552(-)$1	287	5	12	12.7105
GGCCCUG	chr4:994549-994811(+)$1	262	241	248	17.1842
GGCUCUG	chr10:75579294-75579558(-)$1	264	42	49	13.1710
GGCCCAG	chr14:105935239-105935525(+)$1	286	73	80	13.1052
GGCCCUU	chr16:89805344-89805606(+)$1	262	181	188	12.7105
GCCCCUG	chr20:60897328-60897593(-)$1	265	229	236	13.3026
GGCCCUG	chrX:153693217-153693487(+)$1	270	107	114	17.1842
GGCUCUG	chrX:153677138-153677390(+)$1	252	137	144	13.1710
GGUCCUG	chr1:1417923-1418216(+)$1	293	141	148	13.3026
GGGCCUG	chr7:100174280-100174518(-)$1	238	22	29	13.1710
ggcccgg	chr18:8609577-8609960(+)$1	383	80	87	13.1052
GGCCCUG	chrX:152936690-152936952(-)$1	262	186	193	17.1842
GGCACUG	chr1:11854473-11854721(-)$1	248	73	80	13.0394
GGGCCUG	chr1:6500527-6500847(+)$1	320	109	116	13.1710

#otherMatches

#Struct PSSM
ddd[ccc	chr8:145693144-145693379(+)$1	235	147	154	17.1842
II{BB{G	chr20:257241-257552(-)$1	311	142	149	13.3684
dddd333	chrX:153178614-153178873(-)$1	259	188	195	12.7105
aeeeee[	chr9:139904698-139904994(-)$1	296	17	24	17.1842
LLHHHHH	chr17:1552191-1552470(-)$1	279	25	32	12.9736
::fffff	chr7:100283494-100283744(-)$1	250	135	142	13.1710
nccc::J	chr9:139564580-139564835(+)$1	255	208	215	13.1052
ddd[ddd	chr9:139728167-139728449(+)$1	282	141	148	13.0394
ffffff[	chr22:50695502-50695867(-)$1	365	67	74	13.0394
ccc"""b	chr9:139563976-139564202(+)$1	226	109	116	13.1052
dddgggg	chr16:28847498-28847748(+)$1	250	198	205	13.1710
dddd]cc	chr11:61643981-61644283(-)$1	302	144	151	13.1052
eeee22g	chr1:1234633-1234972(-)$1	339	261	268	17.1842
ccclllc	chr8:145111219-145111439(-)$1	220	158	165	13.3026
ffffff2	chr3:49049846-49050119(+)$1	273	227	234	17.1842
ff####c	chr1:11854320-11854584(-)$1	264	190	197	13.3026
====22c	chr7:100171875-100172095(-)$1	220	157	164	13.5000
d[eeeee	chr9:138392524-138392902(+)$1	378	93	100	13.3026
]ccceee	chr11:64121401-64121690(+)$1	289	115	122	13.5000
=======	chr21:46912889-46913211(+)$1	322	64	71	17.1842
dddd[bb	chr11:376973-377233(+)$1	260	108	115	13.5000
nnccc]h	chr22:38211219-38211542(+)$1	323	268	275	17.1842
gg333bb	chr11:803521-803795(-)$1	274	75	82	13.3684
dd333cc	chr16:89760411-89760712(+)$1	301	33	40	13.1710
ddddmmm	chr4:994635-994945(+)$1	310	155	162	17.1842
::::::e	chr16:1498947-1499213(-)$1	266	68	75	13.3026
!bb[hhh	chr6:33179056-33179343(+)$1	287	11	18	17.1842
dgggggg	chr6:31938137-31938452(-)$1	315	41	48	13.1052
ccc[ggg	chr1:155294916-155295267(+)$1	351	189	196	13.1052
FFF:ddd	chr16:2867610-2867909(+)$1	299	14	21	17.1842
!bb!!cc	chrX:153668564-153668864(+)$1	300	168	175	13.1052
eeeee:D	chr17:79180507-79180823(-)$1	316	247	254	17.1842
|CCCCCC	chr22:20073734-20073981(+)$1	247	208	215	13.1052
22ggggg	chr4:1804534-1804796(+)$1	262	245	252	13.5000
eeeeccc	chr1:1019485-1019788(-)$1	303	148	155	13.1710
eeeeeee	chr7:100170637-100170907(-)$1	270	129	136	12.8421
:::DDDD	chr9:80646036-80646322(-)$1	286	1	8	17.1842
c[iiiii	chr8:145140333-145140595(+)$1	262	25	32	17.1842
IIIIIII	chr8:144917434-144917736(-)$1	302	15	22	13.5000
eeeeeee	chr11:290684-290958(+)$1	274	173	180	17.1842
fffff:e	chr19:10907871-10908212(+)$1	341	138	145	13.3684
]eeeee2	chr19:17320974-17321247(+)$1	273	44	51	13.1710
pppffff	chr15:75650848-75651135(-)$1	287	200	207	13.3026
hhhhadd	chr5:176916978-176917312(-)$1	334	145	152	17.1842
=======	chr19:10406918-10407213(+)$1	295	139	146	12.9736
7bbiiii	chr17:72768073-72768344(-)$1	271	126	133	13.3026
]bb4444	chr7:72718301-72718580(-)$1	279	126	133	12.7105
gg[eeee	chr19:1012228-1012485(-)$1	257	166	173	13.3026
4ccc]dd	chr21:46281420-46281753(-)$1	333	291	298	13.5000
]dddd22	chr20:3735047-3735375(-)$1	328	191	198	13.3026
hhhhhh!	chr11:64121490-64121757(+)$1	267	26	33	13.5000
eeeeeFF	chr8:145107039-145107286(-)$1	247	14	21	12.8421
ddeeeee	chr16:89758116-89758368(+)$1	252	127	134	12.9736
ee:eeee	chr6:91254227-91254513(-)$1	286	221	228	13.3684
ff22ccc	chr9:139734719-139734982(+)$1	263	206	213	13.5000
DDDBBJJ	chr22:20073905-20074197(+)$1	292	37	44	13.1052
=======	chr17:80016281-80016563(-)$1	282	70	77	13.3026
DDD}DDD	chr19:1012285-1012544(-)$1	259	225	232	13.3026
hhhlllh	chr16:841749-841987(+)$1	238	29	36	13.3684
c[eeeee	chr3:50223416-50223827(+)$1	411	212	219	17.1842
B{BBCCC	chr11:67810671-67810971(+)$1	300	10	17	13.3026
gg[eeee	chr19:1012069-1012340(-)$1	271	21	28	13.3026
::CCC{E	chr3:52561265-52561552(-)$1	287	5	12	12.7105
FFFFDDD	chr4:994549-994811(+)$1	262	241	248	17.1842
ddddbbD	chr10:75579294-75579558(-)$1	264	42	49	13.1710
lllgggg	chr14:105935239-105935525(+)$1	286	73	80	13.1052
cccssss	chr16:89805344-89805606(+)$1	262	181	188	12.7105
qqqa]dd	chr20:60897328-60897593(-)$1	265	229	236	13.3026
JJJJJJJ	chrX:153693217-153693487(+)$1	270	107	114	17.1842
dddd!!d	chrX:153677138-153677390(+)$1	252	137	144	13.1710
]bb]eee	chr1:1417923-1418216(+)$1	293	141	148	13.3026
ffff[bb	chr7:100174280-100174518(-)$1	238	22	29	13.1710
{GGGGGG	chr18:8609577-8609960(+)$1	383	80	87	13.1052
ddd]eee	chrX:152936690-152936952(-)$1	262	186	193	17.1842
mmcccee	chr1:11854473-11854721(-)$1	248	73	80	13.0394
ggggggg	chr1:6500527-6500847(+)$1	320	109	116	13.1710

#DB
(((.(((	chr8:145693144-145693379(+)$1	1	147	154	17.1842
((.((.(	chr20:257241-257552(-)$1	1	142	149	13.3684
))))...	chrX:153178614-153178873(-)$1	1	188	195	12.7105
((((((.	chr9:139904698-139904994(-)$1	1	17	24	17.1842
..(((((	chr17:1552191-1552470(-)$1	1	25	32	12.9736
..(((((	chr7:100283494-100283744(-)$1	1	135	142	13.1710
.)))..)	chr9:139564580-139564835(+)$1	1	208	215	13.1052
(((.(((	chr9:139728167-139728449(+)$1	1	141	148	13.0394
((((((.	chr22:50695502-50695867(-)$1	1	67	74	13.0394
(((...(	chr9:139563976-139564202(+)$1	1	109	116	13.1052
)))))))	chr16:28847498-28847748(+)$1	1	198	205	13.1710
)))).))	chr11:61643981-61644283(-)$1	1	144	151	13.1052
))))..)	chr1:1234633-1234972(-)$1	1	261	268	17.1842
(((...)	chr8:145111219-145111439(-)$1	1	158	165	13.3026
)))))).	chr3:49049846-49050119(+)$1	1	227	234	17.1842
((....(	chr1:11854320-11854584(-)$1	1	190	197	13.3026
))))..)	chr7:100171875-100172095(-)$1	1	157	164	13.5000
(.(((((	chr9:138392524-138392902(+)$1	1	93	100	13.3026
.))))))	chr11:64121401-64121690(+)$1	1	115	122	13.5000
)))))))	chr21:46912889-46913211(+)$1	1	64	71	17.1842
((((.((	chr11:376973-377233(+)$1	1	108	115	13.5000
..))).)	chr22:38211219-38211542(+)$1	1	268	275	17.1842
))...))	chr11:803521-803795(-)$1	1	75	82	13.3684
))...))	chr16:89760411-89760712(+)$1	1	33	40	13.1710
((((...	chr4:994635-994945(+)$1	1	155	162	17.1842
......(	chr16:1498947-1499213(-)$1	1	68	75	13.3026
.((.(((	chr6:33179056-33179343(+)$1	1	11	18	17.1842
)((((((	chr6:31938137-31938452(-)$1	1	41	48	13.1052
(((.(((	chr1:155294916-155295267(+)$1	1	189	196	13.1052
(((.(((	chr16:2867610-2867909(+)$1	1	14	21	17.1842
.((..((	chrX:153668564-153668864(+)$1	1	168	175	13.1052
))))).)	chr17:79180507-79180823(-)$1	1	247	254	17.1842
.))))))	chr22:20073734-20073981(+)$1	1	208	215	13.1052
..)))))	chr4:1804534-1804796(+)$1	1	245	252	13.5000
)))))))	chr1:1019485-1019788(-)$1	1	148	155	13.1710
(((((((	chr7:100170637-100170907(-)$1	1	129	136	12.8421
...((((	chr9:80646036-80646322(-)$1	1	1	8	17.1842
(.(((((	chr8:145140333-145140595(+)$1	1	25	32	17.1842
(((((((	chr8:144917434-144917736(-)$1	1	15	22	13.5000
)))((((	chr11:290684-290958(+)$1	1	173	180	17.1842
))))).(	chr19:10907871-10908212(+)$1	1	138	145	13.3684
.))))).	chr19:17320974-17321247(+)$1	1	44	51	13.1710
...))))	chr15:75650848-75651135(-)$1	1	200	207	13.3026
)))))((	chr5:176916978-176917312(-)$1	1	145	152	17.1842
(((((((	chr19:10406918-10407213(+)$1	1	139	146	12.9736
.))))))	chr17:72768073-72768344(-)$1	1	126	133	13.3026
.))....	chr7:72718301-72718580(-)$1	1	126	133	12.7105
((.((((	chr19:1012228-1012485(-)$1	1	166	173	13.3026
.))).))	chr21:46281420-46281753(-)$1	1	291	298	13.5000
.))))..	chr20:3735047-3735375(-)$1	1	191	198	13.3026
((((((.	chr11:64121490-64121757(+)$1	1	26	33	13.5000
)))))((	chr8:145107039-145107286(-)$1	1	14	21	12.8421
))(((((	chr16:89758116-89758368(+)$1	1	127	134	12.9736
)).((((	chr6:91254227-91254513(-)$1	1	221	228	13.3684
))..)))	chr9:139734719-139734982(+)$1	1	206	213	13.5000
(((((((	chr22:20073905-20074197(+)$1	1	37	44	13.1052
(((((((	chr17:80016281-80016563(-)$1	1	70	77	13.3026
))).)))	chr19:1012285-1012544(-)$1	1	225	232	13.3026
(((...)	chr16:841749-841987(+)$1	1	29	36	13.3684
(.(((((	chr3:50223416-50223827(+)$1	1	212	219	17.1842
(.(((((	chr11:67810671-67810971(+)$1	1	10	17	13.3026
((.((((	chr19:1012069-1012340(-)$1	1	21	28	13.3026
..(((.(	chr3:52561265-52561552(-)$1	1	5	12	12.7105
)))))))	chr4:994549-994811(+)$1	1	241	248	17.1842
))))))(	chr10:75579294-75579558(-)$1	1	42	49	13.1710
...))))	chr14:105935239-105935525(+)$1	1	73	80	13.1052
(((....	chr16:89805344-89805606(+)$1	1	181	188	12.7105
...).))	chr20:60897328-60897593(-)$1	1	229	236	13.3026
)))))))	chrX:153693217-153693487(+)$1	1	107	114	17.1842
((((..(	chrX:153677138-153677390(+)$1	1	137	144	13.1710
.)).)))	chr1:1417923-1418216(+)$1	1	141	148	13.3026
((((.((	chr7:100174280-100174518(-)$1	1	22	29	13.1710
.((((((	chr18:8609577-8609960(+)$1	1	80	87	13.1052
))).)))	chrX:152936690-152936952(-)$1	1	186	193	17.1842
..)))))	chr1:11854473-11854721(-)$1	1	73	80	13.0394
)))))))	chr1:6500527-6500847(+)$1	1	109	116	13.1710

#PSSM
G : 0.78	g : 0.10	A : 0.07	C : 0.02	
G : 0.72	g : 0.10	U : 0.06	A : 0.05	C : 0.05	
C : 0.76	c : 0.09	U : 0.07	G : 0.05	A : 0.01	
C : 0.80	U : 0.06	c : 0.06	A : 0.03	g : 0.02	
C : 0.90	c : 0.09	
U : 0.80	C : 0.06	u : 0.03	c : 0.03	A : 0.02	G : 0.01	g : 0.01	
G : 0.85	g : 0.09	U : 0.05	

#score	1074.5526315789486
#seq	76
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_UTR_m2_run1.nuc.txt

#NT
GGUGG	chr9:110046150-110046532(+)$1	382	54	59	15.0000
GGUGG	chr14:24908336-24908590(+)$1	254	124	129	15.0000
GGUGG	chr12:125398641-125398963(-)$1	322	47	52	15.0000
GGUGG	chr14:104163934-104164200(+)$1	266	107	112	15.0000
GGUGG	chr10:74035261-74035511(+)$1	250	108	113	15.0000
GGUGG	chr11:18425214-18425435(+)$1	221	132	137	15.0000
GGUGG	chr16:2821104-2821355(+)$1	251	110	115	15.0000
GGUGG	chr20:33872250-33872486(-)$1	236	13	18	15.0000
GGUGG	chr17:7477028-7477309(+)$1	281	196	201	15.0000
GGUGG	chr3:49045518-49045768(+)$1	250	3	8	15.0000
GGUGG	chr1:26147380-26147680(+)$1	300	113	118	15.0000
GGUGG	chr2:131808664-131808926(-)$1	262	102	107	15.0000
GGUGG	chr9:127020423-127020706(+)$1	283	202	207	15.0000
GGUGG	chr16:2579729-2579975(+)$1	246	86	91	15.0000
GGUGG	chr8:134308518-134308847(-)$1	329	57	62	15.0000
GGUGG	chr16:2581146-2581444(+)$1	298	117	122	15.0000
GGUGG	chr21:34942094-34942381(+)$1	287	221	226	15.0000
GGUGG	chr11:18425235-18425451(+)$1	216	111	116	15.0000
GGUGG	chr2:20550290-20550540(-)$1	250	1	6	15.0000
GGUGG	chr20:24943988-24944271(-)$1	283	153	158	15.0000
GGUGG	chr16:57220711-57220971(+)$1	260	12	17	15.0000
GGUGG	chr3:113464486-113464775(-)$1	289	18	23	15.0000
GGUGG	chr12:30907133-30907456(-)$1	323	1	6	15.0000
GGUGG	chr17:74731214-74731466(-)$1	252	108	113	15.0000
GGUGG	chr2:178128151-178128399(-)$1	248	15	20	15.0000
GGUGG	chr1:1336649-1336964(+)$1	315	4	9	15.0000
GGUGG	chr3:32936323-32936602(+)$1	279	143	148	15.0000
GGUGG	chr19:50168041-50168352(-)$1	311	198	203	15.0000
GGUGG	chr8:144674985-144675247(-)$1	262	80	85	15.0000
GGUGG	chr2:20549869-20550113(-)$1	244	118	123	15.0000
GGUGG	chr5:73924808-73925103(-)$1	295	87	92	15.0000
GGUGG	chr12:8025158-8025442(-)$1	284	39	44	15.0000
GGUGG	chr16:68331309-68331656(+)$1	347	108	113	15.0000
GGUGG	chr11:703358-703645(-)$1	287	34	39	15.0000
GGUGG	chr20:62565176-62565444(+)$1	268	60	65	15.0000
GGUGG	chr8:12611484-12611752(-)$1	268	130	135	15.0000
GGUGG	chr19:2270253-2270568(+)$1	315	91	96	15.0000
GGUGG	chr1:11084610-11084885(+)$1	275	92	97	15.0000
GGUGG	chr5:74161197-74161501(-)$1	304	153	158	15.0000
GGUGG	chr11:66394121-66394379(+)$1	258	62	67	15.0000
GGUGG	chr8:144678726-144678991(-)$1	265	10	15	15.0000

#otherMatches

#Struct PSSM
dcccn	chr15:72521844-72522138(-)$1	294	177	182	15.0000
JJJJJ	chr9:110046150-110046532(+)$1	382	54	59	15.0000
eeeee	chr14:24908336-24908590(+)$1	254	124	129	15.0000
eBB{D	chr12:125398641-125398963(-)$1	322	47	52	15.0000
ggggg	chr14:104163934-104164200(+)$1	266	107	112	15.0000
:::::	chr10:74035261-74035511(+)$1	250	108	113	15.0000
fff==	chr11:18425214-18425435(+)$1	221	132	137	15.0000
bbddd	chr16:2821104-2821355(+)$1	251	110	115	15.0000
IIIII	chr20:33872250-33872486(-)$1	236	13	18	15.0000
c]a]f	chr17:7477028-7477309(+)$1	281	196	201	15.0000
FFFFF	chr3:49045518-49045768(+)$1	250	3	8	15.0000
mmggg	chr1:26147380-26147680(+)$1	300	113	118	15.0000
cccee	chr2:131808664-131808926(-)$1	262	102	107	15.0000
mmmff	chr9:127020423-127020706(+)$1	283	202	207	15.0000
HHHCC	chr16:2579729-2579975(+)$1	246	86	91	15.0000
ppppp	chr8:134308518-134308847(-)$1	329	57	62	15.0000
D}GGG	chr16:2581146-2581444(+)$1	298	117	122	15.0000
ggggg	chr21:34942094-34942381(+)$1	287	221	226	15.0000
fff==	chr11:18425235-18425451(+)$1	216	111	116	15.0000
:::DD	chr2:20550290-20550540(-)$1	250	1	6	15.0000
dd[dd	chr20:24943988-24944271(-)$1	283	153	158	15.0000
:CCC{	chr16:57220711-57220971(+)$1	260	12	17	15.0000
vvvvv	chr3:113464486-113464775(-)$1	289	18	23	15.0000
:::::	chr12:30907133-30907456(-)$1	323	1	6	15.0000
cccdd	chr17:74731214-74731466(-)$1	252	108	113	15.0000
mmmbb	chr2:178128151-178128399(-)$1	248	15	20	15.0000
EECCC	chr1:1336649-1336964(+)$1	315	4	9	15.0000
mmmcc	chr3:32936323-32936602(+)$1	279	143	148	15.0000
EE{GG	chr19:50168041-50168352(-)$1	311	198	203	15.0000
eeeee	chr8:144674985-144675247(-)$1	262	80	85	15.0000
gggcc	chr2:20549869-20550113(-)$1	244	118	123	15.0000
GGGGG	chr5:73924808-73925103(-)$1	295	87	92	15.0000
IIIII	chr12:8025158-8025442(-)$1	284	39	44	15.0000
:iiii	chr16:68331309-68331656(+)$1	347	108	113	15.0000
eee]c	chr11:703358-703645(-)$1	287	34	39	15.0000
dd[dd	chr20:62565176-62565444(+)$1	268	60	65	15.0000
lllff	chr8:12611484-12611752(-)$1	268	130	135	15.0000
eeedd	chr19:2270253-2270568(+)$1	315	91	96	15.0000
gggdd	chr1:11084610-11084885(+)$1	275	92	97	15.0000
oooff	chr5:74161197-74161501(-)$1	304	153	158	15.0000
cc[ee	chr11:66394121-66394379(+)$1	258	62	67	15.0000
DDD{A	chr8:144678726-144678991(-)$1	265	10	15	15.0000

#DB
((((.	chr15:72521844-72522138(-)$1	1	177	182	15.0000
(((((	chr9:110046150-110046532(+)$1	1	54	59	15.0000
)))))	chr14:24908336-24908590(+)$1	1	124	129	15.0000
)((.(	chr12:125398641-125398963(-)$1	1	47	52	15.0000
(((((	chr14:104163934-104164200(+)$1	1	107	112	15.0000
.....	chr10:74035261-74035511(+)$1	1	108	113	15.0000
)))((	chr11:18425214-18425435(+)$1	1	132	137	15.0000
(((((	chr16:2821104-2821355(+)$1	1	110	115	15.0000
(((((	chr20:33872250-33872486(-)$1	1	13	18	15.0000
).).)	chr17:7477028-7477309(+)$1	1	196	201	15.0000
(((((	chr3:49045518-49045768(+)$1	1	3	8	15.0000
..)))	chr1:26147380-26147680(+)$1	1	113	118	15.0000
)))))	chr2:131808664-131808926(-)$1	1	102	107	15.0000
...))	chr9:127020423-127020706(+)$1	1	202	207	15.0000
(((((	chr16:2579729-2579975(+)$1	1	86	91	15.0000
.....	chr8:134308518-134308847(-)$1	1	57	62	15.0000
).)))	chr16:2581146-2581444(+)$1	1	117	122	15.0000
)))))	chr21:34942094-34942381(+)$1	1	221	226	15.0000
)))((	chr11:18425235-18425451(+)$1	1	111	116	15.0000
...((	chr2:20550290-20550540(-)$1	1	1	6	15.0000
((.((	chr20:24943988-24944271(-)$1	1	153	158	15.0000
.(((.	chr16:57220711-57220971(+)$1	1	12	17	15.0000
.....	chr3:113464486-113464775(-)$1	1	18	23	15.0000
.....	chr12:30907133-30907456(-)$1	1	1	6	15.0000
)))))	chr17:74731214-74731466(-)$1	1	108	113	15.0000
...))	chr2:178128151-178128399(-)$1	1	15	20	15.0000
(((((	chr1:1336649-1336964(+)$1	1	4	9	15.0000
...))	chr3:32936323-32936602(+)$1	1	143	148	15.0000
((.((	chr19:50168041-50168352(-)$1	1	198	203	15.0000
(((((	chr8:144674985-144675247(-)$1	1	80	85	15.0000
)))))	chr2:20549869-20550113(-)$1	1	118	123	15.0000
(((((	chr5:73924808-73925103(-)$1	1	87	92	15.0000
(((((	chr12:8025158-8025442(-)$1	1	39	44	15.0000
.((((	chr16:68331309-68331656(+)$1	1	108	113	15.0000
))).)	chr11:703358-703645(-)$1	1	34	39	15.0000
((.((	chr20:62565176-62565444(+)$1	1	60	65	15.0000
...))	chr8:12611484-12611752(-)$1	1	130	135	15.0000
)))))	chr19:2270253-2270568(+)$1	1	91	96	15.0000
)))))	chr1:11084610-11084885(+)$1	1	92	97	15.0000
...))	chr5:74161197-74161501(-)$1	1	153	158	15.0000
((.((	chr11:66394121-66394379(+)$1	1	62	67	15.0000
(((.(	chr8:144678726-144678991(-)$1	1	10	15	15.0000

#PSSM
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	

#score	630.0000000000001
#seq	42
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_UTR_m3_run2.nuc.txt

#NT
CUCUGCC	chr19:5693194-5693409(-)$1	215	180	187	16.9230
CGCUGCC	chr19:17669971-17670244(+)$1	273	123	130	13.0769
CUCUGCU	chr1:52249749-52250052(+)$1	303	284	291	13.2307
CUCUGUC	chr19:8553444-8553702(+)$1	258	65	72	12.2307
CUCUUCC	chr18:47018682-47018928(-)$1	246	73	80	12.9230
CUCUGCC	chr19:45451847-45452110(+)$1	263	23	30	16.9230
CCCUGCC	chr17:40989505-40989846(+)$1	341	138	145	13.5384
CUCUCCC	chr17:73567596-73567862(+)$1	266	53	60	12.9999
CUCUGCA	chr4:89668023-89668302(-)$1	279	173	180	13.0769
CUCUGCU	chr17:37871854-37872136(+)$1	282	244	251	13.2307
CUCUGCC	chr1:23670561-23670806(-)$1	245	93	100	16.9230
CUCUGCC	chr14:31676455-31676696(-)$1	241	44	51	16.9230
CUGUGCC	chr19:50363112-50363359(+)$1	247	32	39	12.8461
CUCUGCU	chr11:122932629-122932855(-)$1	226	91	98	13.2307
CUGUGCC	chr2:120129664-120130010(+)$1	346	247	254	12.8461
CUCUGCU	chr2:101619011-101619280(+)$1	269	118	125	13.2307
CUCUGCA	chr17:72768066-72768357(-)$1	291	93	100	13.0769
CUCUGCC	chr16:74335948-74336271(+)$1	323	152	159	16.9230
CUCUCCC	chr10:88280956-88281222(-)$1	266	6	13	12.9999
CUCUGCA	chr3:38167709-38168022(-)$1	313	110	117	13.0769
CUCUCCC	chr1:8074381-8074625(-)$1	244	105	112	12.9999
CUCUGCC	chr5:138609749-138610004(+)$1	255	56	63	16.9230
CUUUGCC	chr15:64415619-64415885(+)$1	266	222	229	12.6153
cccugcc	chr16:30675736-30675975(+)$1	239	29	36	13.5384
CUCUGCU	chr12:56488880-56489186(+)$1	306	114	121	13.2307
CGCUGCC	chr19:47287613-47287952(-)$1	339	47	54	13.0769
GUCUGCC	chr17:21201616-21201913(+)$1	297	179	186	12.3846
CUCUGGC	chr11:62546170-62546503(+)$1	333	161	168	12.3076
CUCUUCC	chr1:156304562-156304829(-)$1	267	181	188	12.9230
CCCUGCC	chr20:61438723-61438984(+)$1	261	246	253	13.5384
UUCUGCC	chr4:107157814-107158087(-)$1	273	74	81	12.5384
cccugcc	chr1:3689303-3689544(+)$1	241	1	8	13.5384
cucggcc	chr19:4723543-4723786(-)$1	243	169	176	12.6923
CUCUCCC	chr11:62651799-62652100(+)$1	301	16	23	12.9999
CUCUGCC	chr12:6879217-6879488(+)$1	271	54	61	16.9230
AUCUGCC	chr17:7214451-7214787(+)$1	336	205	212	12.3846
CUCUGCC	chr3:48637019-48637326(-)$1	307	165	172	16.9230
CUCUGCG	chr17:78075324-78075603(+)$1	279	36	43	12.8461
CGCUGCC	chr4:1988027-1988278(-)$1	251	18	25	13.0769
CUCUGCA	chr14:21555294-21555594(+)$1	300	176	183	13.0769
UUCUGCC	chr17:40927273-40927571(+)$1	298	226	233	12.5384
CUCUUCC	chr16:74565912-74566160(-)$1	248	207	214	12.9230
CCCUGCC	chr17:76970632-76970870(-)$1	238	157	164	13.5384
CUGUGCC	chr16:87377217-87377530(-)$1	313	69	76	12.8461
CUCGGCC	chrX:152913208-152913506(+)$1	298	119	126	12.6923
CUCCGCC	chr12:53574215-53574451(-)$1	236	0	7	12.5384
UUCUGCC	chr9:134358613-134358877(+)$1	264	158	165	12.5384
CUCUGGC	chr6:32137088-32137398(-)$1	310	239	246	12.3076
CUCUGCC	chr2:11702590-11702848(+)$1	258	88	95	16.9230
CUCUGCC	chrX:30714038-30714292(+)$1	254	110	117	16.9230
CUUUGCC	chr16:29816006-29816287(+)$1	281	115	122	12.6153
CCCUGCC	chr19:14673231-14673525(+)$1	294	257	264	13.5384
CUCGGCC	chr6:18264125-18264398(-)$1	273	188	195	12.6923
CUCUUCC	chr11:61187915-61188218(-)$1	303	144	151	12.9230
CUCUCCC	chr2:242207833-242208107(-)$1	274	125	132	12.9999
CCCUGCC	chr19:45419324-45419574(+)$1	250	101	108	13.5384
CUGUGCC	chr17:46135489-46135777(+)$1	288	79	86	12.8461
CUCUGCC	chr16:29816319-29816549(+)$1	230	199	206	16.9230
CUCGGCC	chr1:19200916-19201211(-)$1	295	18	25	12.6923
CUGUGCC	chr11:116708184-116708420(-)$1	236	199	206	12.8461
CCCUGCC	chr2:27435374-27435584(+)$1	210	87	94	13.5384
CUCCGCC	chr6:74230623-74230852(-)$1	229	34	41	12.5384
CCCUGCC	chr17:80559011-80559292(+)$1	281	218	225	13.5384
CUCUGCU	chr16:84214505-84214749(-)$1	244	132	139	13.2307

#otherMatches

#Struct PSSM
33ddddc	chr19:18555546-18555842(-)$1	296	28	35	16.9230
eeee[cc	chr19:5693194-5693409(-)$1	215	180	187	16.9230
:ccceee	chr19:17669971-17670244(+)$1	273	123	130	13.0769
oofffff	chr1:52249749-52250052(+)$1	303	284	291	13.2307
ddd[ddd	chr19:8553444-8553702(+)$1	258	65	72	12.2307
G{DDDDT	chr18:47018682-47018928(-)$1	246	73	80	12.9230
::::bb#	chr19:45451847-45452110(+)$1	263	23	30	16.9230
qqqqddd	chr17:40989505-40989846(+)$1	341	138	145	13.5384
""hhhhh	chr17:73567596-73567862(+)$1	266	53	60	12.9999
##eeeee	chr4:89668023-89668302(-)$1	279	173	180	13.0769
FFFFFEE	chr17:37871854-37872136(+)$1	282	244	251	13.2307
dddd]hh	chr1:23670561-23670806(-)$1	245	93	100	16.9230
fffffee	chr14:31676455-31676696(-)$1	241	44	51	16.9230
EEE{GGG	chr19:50363112-50363359(+)$1	247	32	39	12.8461
ddddnnn	chr11:122932629-122932855(-)$1	226	91	98	13.2307
a4444cc	chr2:120129664-120130010(+)$1	346	247	254	12.8461
dddd]dd	chr2:101619011-101619280(+)$1	269	118	125	13.2307
DD{CCC:	chr17:72768066-72768357(-)$1	291	93	100	13.0769
ffa[ccc	chr16:74335948-74336271(+)$1	323	152	159	16.9230
IIIIIII	chr10:88280956-88281222(-)$1	266	6	13	12.9999
ceeeeel	chr3:38167709-38168022(-)$1	313	110	117	13.0769
hhhhhhb	chr1:8074381-8074625(-)$1	244	105	112	12.9999
ffffff[	chr5:138609749-138610004(+)$1	255	56	63	16.9230
####a!!	chr15:64415619-64415885(+)$1	266	222	229	12.6153
:::::JJ	chr16:30675736-30675975(+)$1	239	29	36	13.5384
IIIIIII	chr12:56488880-56489186(+)$1	306	114	121	13.2307
^^fffff	chr19:47287613-47287952(-)$1	339	47	54	13.0769
:HHHHHH	chr17:21201616-21201913(+)$1	297	179	186	12.3846
22ccc]b	chr11:62546170-62546503(+)$1	333	161	168	12.3076
zzzzzzz	chr1:156304562-156304829(-)$1	267	181	188	12.9230
bGGGGGG	chr20:61438723-61438984(+)$1	261	246	253	13.5384
mmmmddd	chr4:107157814-107158087(-)$1	273	74	81	12.5384
ffffffa	chr1:3689303-3689544(+)$1	241	1	8	13.5384
"""cccx	chr19:4723543-4723786(-)$1	243	169	176	12.6923
FFFCCCF	chr11:62651799-62652100(+)$1	301	16	23	12.9999
hhhhhhc	chr12:6879217-6879488(+)$1	271	54	61	16.9230
gg333ii	chr17:7214451-7214787(+)$1	336	205	212	12.3846
:hhhhhh	chr3:48637019-48637326(-)$1	307	165	172	16.9230
=======	chr17:78075324-78075603(+)$1	279	36	43	12.8461
EEEEEKK	chr4:1988027-1988278(-)$1	251	18	25	13.0769
:::cccq	chr14:21555294-21555594(+)$1	300	176	183	13.0769
_____BB	chr17:40927273-40927571(+)$1	298	226	233	12.5384
ooooeee	chr16:74565912-74566160(-)$1	248	207	214	12.9230
444ccc]	chr17:76970632-76970870(-)$1	238	157	164	13.5384
dd]eeee	chr16:87377217-87377530(-)$1	313	69	76	12.8461
ii]ccc5	chrX:152913208-152913506(+)$1	298	119	126	12.6923
:EEEEEB	chr12:53574215-53574451(-)$1	236	0	7	12.5384
clllccc	chr9:134358613-134358877(+)$1	264	158	165	12.5384
ggggA}F	chr6:32137088-32137398(-)$1	310	239	246	12.3076
E:GGGGG	chr2:11702590-11702848(+)$1	258	88	95	16.9230
eeeemmm	chrX:30714038-30714292(+)$1	254	110	117	16.9230
eeee::d	chr16:29816006-29816287(+)$1	281	115	122	12.6153
3ffffff	chr19:14673231-14673525(+)$1	294	257	264	13.5384
eeeeea[	chr6:18264125-18264398(-)$1	273	188	195	12.6923
ff>>>>>	chr11:61187915-61188218(-)$1	303	144	151	12.9230
cc+++++	chr2:242207833-242208107(-)$1	274	125	132	12.9999
:ffffff	chr19:45419324-45419574(+)$1	250	101	108	13.5384
qqqqqqq	chr17:46135489-46135777(+)$1	288	79	86	12.8461
DDDDDEE	chr16:29816319-29816549(+)$1	230	199	206	16.9230
NNNJJJJ	chr1:19200916-19201211(-)$1	295	18	25	12.6923
g!!cccb	chr11:116708184-116708420(-)$1	236	199	206	12.8461
dda]ddd	chr2:27435374-27435584(+)$1	210	87	94	13.5384
=======	chr6:74230623-74230852(-)$1	229	34	41	12.5384
ccddddb	chr17:80559011-80559292(+)$1	281	218	225	13.5384
cddddqq	chr16:84214505-84214749(-)$1	244	132	139	13.2307

#DB
..)))))	chr19:18555546-18555842(-)$1	1	28	35	16.9230
((((.((	chr19:5693194-5693409(-)$1	1	180	187	16.9230
.((((((	chr19:17669971-17670244(+)$1	1	123	130	13.0769
..)))))	chr1:52249749-52250052(+)$1	1	284	291	13.2307
(((.(((	chr19:8553444-8553702(+)$1	1	65	72	12.2307
(.((((.	chr18:47018682-47018928(-)$1	1	73	80	12.9230
....((.	chr19:45451847-45452110(+)$1	1	23	30	16.9230
....)))	chr17:40989505-40989846(+)$1	1	138	145	13.5384
..(((((	chr17:73567596-73567862(+)$1	1	53	60	12.9999
..(((((	chr4:89668023-89668302(-)$1	1	173	180	13.0769
)))))))	chr17:37871854-37872136(+)$1	1	244	251	13.2307
)))).))	chr1:23670561-23670806(-)$1	1	93	100	16.9230
(((((((	chr14:31676455-31676696(-)$1	1	44	51	16.9230
(((.(((	chr19:50363112-50363359(+)$1	1	32	39	12.8461
((((...	chr11:122932629-122932855(-)$1	1	91	98	13.2307
)....))	chr2:120129664-120130010(+)$1	1	247	254	12.8461
)))).))	chr2:101619011-101619280(+)$1	1	118	125	13.2307
((.(((.	chr17:72768066-72768357(-)$1	1	93	100	13.0769
(((.(((	chr16:74335948-74336271(+)$1	1	152	159	16.9230
(((((((	chr10:88280956-88281222(-)$1	1	6	13	12.9999
)(((((.	chr3:38167709-38168022(-)$1	1	110	117	13.0769
(((((((	chr1:8074381-8074625(-)$1	1	105	112	12.9999
((((((.	chr5:138609749-138610004(+)$1	1	56	63	16.9230
....(..	chr15:64415619-64415885(+)$1	1	222	229	12.6153
.....((	chr16:30675736-30675975(+)$1	1	29	36	13.5384
)))))))	chr12:56488880-56489186(+)$1	1	114	121	13.2307
..)))))	chr19:47287613-47287952(-)$1	1	47	54	13.0769
.((((((	chr17:21201616-21201913(+)$1	1	179	186	12.3846
..))).)	chr11:62546170-62546503(+)$1	1	161	168	12.3076
.......	chr1:156304562-156304829(-)$1	1	181	188	12.9230
)))))))	chr20:61438723-61438984(+)$1	1	246	253	13.5384
....)))	chr4:107157814-107158087(-)$1	1	74	81	12.5384
(((((((	chr1:3689303-3689544(+)$1	1	1	8	13.5384
...(((.	chr19:4723543-4723786(-)$1	1	169	176	12.6923
(((((((	chr11:62651799-62652100(+)$1	1	16	23	12.9999
)))))))	chr12:6879217-6879488(+)$1	1	54	61	16.9230
))...))	chr17:7214451-7214787(+)$1	1	205	212	12.3846
.((((((	chr3:48637019-48637326(-)$1	1	165	172	16.9230
(((((((	chr17:78075324-78075603(+)$1	1	36	43	12.8461
(((((..	chr4:1988027-1988278(-)$1	1	18	25	13.0769
...(((.	chr14:21555294-21555594(+)$1	1	176	183	13.0769
.....))	chr17:40927273-40927571(+)$1	1	226	233	12.5384
....)))	chr16:74565912-74566160(-)$1	1	207	214	12.9230
...))).	chr17:76970632-76970870(-)$1	1	157	164	13.5384
)).))))	chr16:87377217-87377530(-)$1	1	69	76	12.8461
)).))).	chrX:152913208-152913506(+)$1	1	119	126	12.6923
.((((((	chr12:53574215-53574451(-)$1	1	0	7	12.5384
(...)))	chr9:134358613-134358877(+)$1	1	158	165	12.5384
))))).)	chr6:32137088-32137398(-)$1	1	239	246	12.3076
(.(((((	chr2:11702590-11702848(+)$1	1	88	95	16.9230
((((...	chrX:30714038-30714292(+)$1	1	110	117	16.9230
))))..(	chr16:29816006-29816287(+)$1	1	115	122	12.6153
.))))))	chr19:14673231-14673525(+)$1	1	257	264	13.5384
((((((.	chr6:18264125-18264398(-)$1	1	188	195	12.6923
)).....	chr11:61187915-61188218(-)$1	1	144	151	12.9230
((.....	chr2:242207833-242208107(-)$1	1	125	132	12.9999
.((((((	chr19:45419324-45419574(+)$1	1	101	108	13.5384
.......	chr17:46135489-46135777(+)$1	1	79	86	12.8461
)))))))	chr16:29816319-29816549(+)$1	1	199	206	16.9230
...((((	chr1:19200916-19201211(-)$1	1	18	25	12.6923
(..((((	chr11:116708184-116708420(-)$1	1	199	206	12.8461
))).)))	chr2:27435374-27435584(+)$1	1	87	94	13.5384
(((((((	chr6:74230623-74230852(-)$1	1	34	41	12.5384
(((((((	chr17:80559011-80559292(+)$1	1	218	225	13.5384
(((((..	chr16:84214505-84214749(-)$1	1	132	139	13.2307

#PSSM
C : 0.87	c : 0.04	U : 0.04	G : 0.01	A : 0.01	
U : 0.79	C : 0.10	G : 0.04	c : 0.03	u : 0.01	
C : 0.84	G : 0.07	c : 0.04	U : 0.03	
U : 0.87	G : 0.04	u : 0.03	C : 0.03	g : 0.01	
G : 0.81	C : 0.07	U : 0.06	g : 0.04	
C : 0.90	c : 0.04	G : 0.03	U : 0.01	
C : 0.78	U : 0.09	A : 0.06	c : 0.04	G : 0.01	

#score	889.923076923076
#seq	65
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_UTR_m3_run1.nuc.txt

#NT
CCCCCGGCCGCCC	chr8:103424513-103424793(-)$1	280	18	31	15.8269
gagggggcCGCCC	chr19:42788432-42788702(+)$1	270	13	26	13.6153
cccggccccgccc	chr3:184032771-184033054(+)$1	283	150	163	15.6346
CCUGGGGCCGACC	chr10:43892140-43892379(-)$1	239	152	165	19.1923
CCUGGGUgcggcc	chr3:52567608-52567895(-)$1	287	235	248	12.1730
CCGGUUGCCUCCC	chr17:7476449-7476681(+)$1	232	90	103	14.2884
CCUGGGGCCUCCC	chr16:1413573-1413869(-)$1	296	137	150	21.5961
ccuccggccgccg	chr12:131356629-131356950(+)$1	321	297	310	14.0000
CCUGGGUCCUGCC	chr9:131571341-131571608(+)$1	267	68	81	15.3461
CCGGGGGCCGUCG	chr2:191513835-191514175(+)$1	340	173	186	15.7307
ccugcugccuccg	chr11:116968845-116969119(-)$1	274	62	75	13.2307
ccugggcgcgcgc	chr11:64545093-64545355(-)$1	262	33	46	12.6538
CCUGCGCCCCCCG	chr17:79479461-79479727(-)$1	266	8	21	11.9807
CCCGGGGCCUGCC	chr1:26232200-26232477(-)$1	277	198	211	18.3269
CUGUGGGCCUCCC	chr17:27139251-27139644(-)$1	393	41	54	12.4615
CGCGGGGCCCCGC	chr15:93426515-93426778(+)$1	263	111	124	13.3269
CCCGGCGGCUCCG	chr8:52811346-52811688(-)$1	342	27	40	11.4038
ccgggcgccgccc	chr19:1104349-1104692(+)$1	343	243	256	19.0000
CCGGGGGCCGGGG	chr19:1271406-1271667(+)$1	261	3	16	14.2884
GCUGGGGACACCC	chr7:100171080-100171332(-)$1	252	89	102	12.0769
GGUGGGGCCUCGC	chr19:1009932-1010148(-)$1	216	160	173	11.5000
CCUGGGGCCGGCG	chr22:39916704-39916968(+)$1	264	84	97	17.4615
ccugcggccugcg	chr19:1205792-1206050(+)$1	258	216	229	14.0961
CCCCGGGCCUCUC	chr5:162864665-162864921(+)$1	256	17	30	13.9038
CCUGGAGCCGGCA	chr12:133337813-133338127(-)$1	314	11	24	13.4230
CCCGGCGCCUCGG	chr20:3995707-3996010(-)$1	303	60	73	13.2307
CCUACGGCCGCCC	chr5:137910742-137911006(-)$1	264	59	72	16.1153
UCUGGGGCCCCGC	chr3:184033088-184033360(+)$1	272	140	153	14.0961
CCGGUGGCCUCCA	chr1:228270973-228271264(+)$1	291	256	269	14.5769
cccucggccgccc	chr8:101963424-101963674(-)$1	250	13	26	15.4423
CGUGGCGCCGCCA	chr2:85766636-85766921(+)$1	285	9	22	12.7500
CCUGGCGGCUUCC	chr5:179248034-179248279(+)$1	245	79	92	11.4038
cccggccccggcc	chr1:36851270-36851581(-)$1	311	169	182	13.1346
CCGGGGGCAGCUC	chr9:139560088-139560350(+)$1	262	9	22	13.8076
CCUGGUGCUCCCC	chr16:720927-721170(+)$1	243	123	136	12.6538
CCGGUGGCCGCGC	chr15:93426377-93426626(+)$1	249	17	30	16.3076
CCCGGGCCCGCGC	chr16:85644957-85645215(+)$1	258	35	48	16.0192
CCGGGCACCUCCC	chr6:34857033-34857319(+)$1	286	183	196	14.0961
CCUCAGGCCUCCC	chr9:139743353-139743634(+)$1	281	184	197	14.6730
ccggggcccuggc	chr2:145274901-145275127(-)$1	226	51	64	12.4615
UCGGGGGCCGCCA	chr3:197024774-197025040(-)$1	266	37	50	14.5769
ACCCGGGCCGCCC	chr8:146017439-146017698(-)$1	259	132	145	14.0961
GCUGCCGCCGCCC	chr18:9102757-9103012(+)$1	255	64	77	13.7115
cgcggggcguccc	chr15:72564495-72564958(-)$1	463	55	68	12.2692
CCUGGGGCCGGGC	chr16:4660786-4661039(-)$1	253	121	134	17.7499
CCUGCGGCCACCG	chr1:67773347-67773598(+)$1	251	59	72	15.2500
ccggcggcuggcc	chr14:23791035-23791280(+)$1	245	21	34	12.3653
gccggggccgcgc	chr3:182511332-182511596(+)$1	264	16	29	15.7307
CCGCUGGCCGCCC	chr7:5569457-5569690(-)$1	233	93	106	15.0576
CCCGGGUCCACGC	chr17:66031918-66032179(+)$1	261	122	135	13.4230
cccggggcccagc	chr15:91445985-91446240(+)$1	255	48	61	14.0000

#otherMatches

#Struct PSSM
ggggeeeee]bb:	chr19:15442476-15442799(-)$1	323	69	82	14.3846
RRRFFFFFFGGGG	chr8:103424513-103424793(-)$1	280	18	31	15.8269
a[eeeeellleee	chr19:42788432-42788702(+)$1	270	13	26	13.6153
::ffffff[aqqq	chr3:184032771-184033054(+)$1	283	150	163	15.6346
###bboooooobb	chr10:43892140-43892379(-)$1	239	152	165	19.1923
ggg]ccc]fffff	chr3:52567608-52567895(-)$1	287	235	248	12.1730
eeee!!ccc[bb[	chr17:7476449-7476681(+)$1	232	90	103	14.2884
hhhhhhffffffJ	chr16:1413573-1413869(-)$1	296	137	150	21.5961
~~CCC}IIIIIII	chr12:131356629-131356950(+)$1	321	297	310	14.0000
iiiiii!!a[bbc	chr9:131571341-131571608(+)$1	267	68	81	15.3461
:::CCC}JJJJJJ	chr2:191513835-191514175(+)$1	340	173	186	15.7307
bnnnnnbb4444f	chr11:116968845-116969119(-)$1	274	62	75	13.2307
eeee]hhhhhhhh	chr11:64545093-64545355(-)$1	262	33	46	12.6538
FFFKKDDDDJJJJ	chr17:79479461-79479727(-)$1	266	8	21	11.9807
ggggggGGGGGGG	chr1:26232200-26232477(-)$1	277	198	211	18.3269
oobb]dddd]bb:	chr17:27139251-27139644(-)$1	393	41	54	12.4615
ammmmaeeeeecc	chr15:93426515-93426778(+)$1	263	111	124	13.3269
ffddddccc[fff	chr8:52811346-52811688(-)$1	342	27	40	11.4038
iiDDDD}GGGGGG	chr19:1104349-1104692(+)$1	343	243	256	19.0000
EEKKEEEEEKKJJ	chr19:1271406-1271667(+)$1	261	3	16	14.2884
dddd%%%%%%iii	chr7:100171080-100171332(-)$1	252	89	102	12.0769
a[ffffffnnnnn	chr19:1009932-1010148(-)$1	216	160	173	11.5000
eeeee]bb22ddd	chr22:39916704-39916968(+)$1	264	84	97	17.4615
dddeeeee22ccc	chr19:1205792-1206050(+)$1	258	216	229	14.0961
JJJJJJJJJJCCC	chr5:162864665-162864921(+)$1	256	17	30	13.9038
d[ccc!!eeeee[	chr12:133337813-133338127(-)$1	314	11	24	13.4230
GGGGGGEEEEELL	chr20:3995707-3996010(-)$1	303	60	73	13.2307
JJLLLDDDD:bbd	chr5:137910742-137911006(-)$1	264	59	72	16.1153
f]a]ddddddddf	chr3:184033088-184033360(+)$1	272	140	153	14.0961
DD}GGGGGGG???	chr1:228270973-228271264(+)$1	291	256	269	14.5769
BB{EEEEECCCKK	chr8:101963424-101963674(-)$1	250	13	26	15.4423
a[ddddllldddd	chr2:85766636-85766921(+)$1	285	9	22	12.7500
===22hhhhhhhh	chr5:179248034-179248279(+)$1	245	79	92	11.4038
DDHHHHHHHH}II	chr1:36851270-36851581(-)$1	311	169	182	13.1346
dd"""ccc!!ggg	chr9:139560088-139560350(+)$1	262	9	22	13.8076
gg[bb[bbuuuuu	chr16:720927-721170(+)$1	243	123	136	12.6538
bbccc]cccCCCD	chr15:93426377-93426626(+)$1	249	17	30	16.3076
gggg:bbhhhhhh	chr16:85644957-85645215(+)$1	258	35	48	16.0192
GGGGGGG::ffff	chr6:34857033-34857319(+)$1	286	183	196	14.0961
eCCCJJJJJJJJJ	chr9:139743353-139743634(+)$1	281	184	197	14.6730
mmmdddddddd22	chr2:145274901-145275127(-)$1	226	51	64	12.4615
eeee:::ffffff	chr3:197024774-197025040(-)$1	266	37	50	14.5769
mccc22cccgggg	chr8:146017439-146017698(-)$1	259	132	145	14.0961
bbJJJJJJJJJJ:	chr18:9102757-9103012(+)$1	255	64	77	13.7115
CC{BBdddd====	chr15:72564495-72564958(-)$1	463	55	68	12.2692
IIIIIIIIIeeee	chr16:4660786-4661039(-)$1	253	121	134	17.7499
{BBLLLCCCKKCC	chr1:67773347-67773598(+)$1	251	59	72	15.2500
gggggnnnnnggg	chr14:23791035-23791280(+)$1	245	21	34	12.3653
EE{IIIIIIIII{	chr3:182511332-182511596(+)$1	264	16	29	15.7307
dd]a]ffffff::	chr7:5569457-5569690(-)$1	233	93	106	15.0576
DYYEEEEEYYDDD	chr17:66031918-66032179(+)$1	261	122	135	13.4230
:IIIIIIIII:cc	chr15:91445985-91446240(+)$1	255	48	61	14.0000

#DB
))))))))).)).	chr19:15442476-15442799(-)$1	1	69	82	14.3846
...((((((((((	chr8:103424513-103424793(-)$1	1	18	31	15.8269
(.(((((...)))	chr19:42788432-42788702(+)$1	1	13	26	13.6153
..((((((.(...	chr3:184032771-184033054(+)$1	1	150	163	15.6346
...((......))	chr10:43892140-43892379(-)$1	1	152	165	19.1923
))).))).)))))	chr3:52567608-52567895(-)$1	1	235	248	12.1730
((((..(((.((.	chr17:7476449-7476681(+)$1	1	90	103	14.2884
)))))))))))))	chr16:1413573-1413869(-)$1	1	137	150	21.5961
..))).)))))))	chr12:131356629-131356950(+)$1	1	297	310	14.0000
((((((..(.(((	chr9:131571341-131571608(+)$1	1	68	81	15.3461
...))).))))))	chr2:191513835-191514175(+)$1	1	173	186	15.7307
(.....))....)	chr11:116968845-116969119(-)$1	1	62	75	13.2307
)))).))))))))	chr11:64545093-64545355(-)$1	1	33	46	12.6538
(((..((((((((	chr17:79479461-79479727(-)$1	1	8	21	11.9807
)))))))))))))	chr1:26232200-26232477(-)$1	1	198	211	18.3269
..)).)))).)).	chr17:27139251-27139644(-)$1	1	41	54	12.4615
(....))))))))	chr15:93426515-93426778(+)$1	1	111	124	13.3269
(((((((((.(((	chr8:52811346-52811688(-)$1	1	27	40	11.4038
)))))).))))))	chr19:1104349-1104692(+)$1	1	243	256	19.0000
((..(((((..((	chr19:1271406-1271667(+)$1	1	3	16	14.2884
((((......(((	chr7:100171080-100171332(-)$1	1	89	102	12.0769
(.((((((.....	chr19:1009932-1010148(-)$1	1	160	173	11.5000
))))).))..)))	chr22:39916704-39916968(+)$1	1	84	97	17.4615
))))))))..)))	chr19:1205792-1206050(+)$1	1	216	229	14.0961
(((((((((((((	chr5:162864665-162864921(+)$1	1	17	30	13.9038
(.(((..(((((.	chr12:133337813-133338127(-)$1	1	11	24	13.4230
(((((((((((..	chr20:3995707-3996010(-)$1	1	60	73	13.2307
((...((((.(((	chr5:137910742-137911006(-)$1	1	59	72	16.1153
).).)))))))))	chr3:184033088-184033360(+)$1	1	140	153	14.0961
)).)))))))...	chr1:228270973-228271264(+)$1	1	256	269	14.5769
((.((((((((..	chr8:101963424-101963674(-)$1	1	13	26	15.4423
(.((((...))))	chr2:85766636-85766921(+)$1	1	9	22	12.7500
)))..))))))))	chr5:179248034-179248279(+)$1	1	79	92	11.4038
)))))))))).))	chr1:36851270-36851581(-)$1	1	169	182	13.1346
((...(((..(((	chr9:139560088-139560350(+)$1	1	9	22	13.8076
((.((.((.....	chr16:720927-721170(+)$1	1	123	136	12.6538
))))).)))((((	chr15:93426377-93426626(+)$1	1	17	30	16.3076
)))).((((((((	chr16:85644957-85645215(+)$1	1	35	48	16.0192
)))))))..((((	chr6:34857033-34857319(+)$1	1	183	196	14.0961
)))))))))))))	chr9:139743353-139743634(+)$1	1	184	197	14.6730
...))))))))..	chr2:145274901-145275127(-)$1	1	51	64	12.4615
))))...((((((	chr3:197024774-197025040(-)$1	1	37	50	14.5769
.)))..)))))))	chr8:146017439-146017698(-)$1	1	132	145	14.0961
))((((((((((.	chr18:9102757-9103012(+)$1	1	64	77	13.7115
((.((((((((((	chr15:72564495-72564958(-)$1	1	55	68	12.2692
(((((((((((((	chr16:4660786-4661039(-)$1	1	121	134	17.7499
.((...(((..((	chr1:67773347-67773598(+)$1	1	59	72	15.2500
(((((.....)))	chr14:23791035-23791280(+)$1	1	21	34	12.3653
((.(((((((((.	chr3:182511332-182511596(+)$1	1	16	29	15.7307
)).).))))))..	chr7:5569457-5569690(-)$1	1	93	106	15.0576
)..)))))..)))	chr17:66031918-66032179(+)$1	1	122	135	13.4230
.(((((((((.((	chr15:91445985-91446240(+)$1	1	48	61	14.0000

#PSSM
C : 0.61	c : 0.23	G : 0.05	g : 0.03	U : 0.03	A : 0.01	
C : 0.65	c : 0.23	G : 0.05	a : 0.01	U : 0.01	g : 0.01	
U : 0.36	G : 0.19	C : 0.17	c : 0.11	g : 0.07	u : 0.07	
G : 0.59	g : 0.23	C : 0.09	c : 0.01	U : 0.01	A : 0.01	u : 0.01	
G : 0.51	g : 0.17	C : 0.11	c : 0.09	U : 0.07	A : 0.01	
G : 0.53	g : 0.19	C : 0.13	c : 0.05	U : 0.03	u : 0.01	A : 0.01	
G : 0.61	g : 0.19	c : 0.07	U : 0.05	C : 0.03	A : 0.01	
C : 0.65	c : 0.24	g : 0.03	G : 0.03	A : 0.01	
C : 0.69	c : 0.23	A : 0.01	U : 0.01	g : 0.01	u : 0.01	
G : 0.34	U : 0.24	g : 0.17	u : 0.07	C : 0.07	A : 0.05	c : 0.01	
C : 0.55	c : 0.15	G : 0.11	g : 0.09	U : 0.03	A : 0.01	a : 0.01	
C : 0.51	c : 0.19	G : 0.17	g : 0.07	U : 0.03	
C : 0.49	c : 0.21	G : 0.13	A : 0.09	g : 0.05	

#score	749.9230769230768
#seq	52
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_CDS_m3_run1.nuc.txt

#NT
CGGUCCCCGGCCGA	chr5:112196917-112197211(+)$1	294	174	188	12.1041
CGAGCCUGGGCUGG	chr7:23338916-23339204(+)$1	288	243	257	17.1041
AGGGCAGGGGUGGG	chr7:100172751-100173017(-)$1	266	7	21	15.5416
CGGGCCCGGGCAGC	chr11:236933-237215(+)$1	282	157	171	18.0416
CGGGCCCGGGCAGC	chr11:237015-237245(+)$1	230	75	89	18.0416
CGGggcggcgacgg	chr4:113066682-113066997(+)$1	315	78	92	15.5416
cgggccgggccggg	chr9:101867382-101867635(+)$1	253	68	82	20.3333
cggggcggggcggg	chr3:45730838-45731090(+)$1	252	73	87	21.8958
cuggcgggggcggg	chr1:84971604-84971885(-)$1	281	258	272	17.9374
AGGGCAGGGGUGGG	chr7:100172817-100173059(-)$1	242	49	63	15.5416
CGGGGAGGGGACGG	chr1:52195410-52195765(+)$1	355	46	60	16.8958
CGGCCCGGGGCCGC	chr9:99180180-99180411(-)$1	231	59	73	20.3333
GGGGCCUGGGACAG	chr19:1388421-1388685(+)$1	264	59	73	12.8333
GGUGCCCGGGCCGC	chr1:12227060-12227331(+)$1	271	235	249	14.3958
GGGCUCGGGGCCUG	chr10:75579268-75579558(-)$1	290	58	72	13.8750
caggcgggggccgg	chr6:32157447-32157877(-)$1	430	216	230	19.6041
cggggcggggcggg	chr13:113863753-113864052(+)$1	299	70	84	21.8958
CGGCGCGGGGAAGG	chr1:161087641-161087866(-)$1	225	91	105	14.6041
CGGGCCGGGGCCGG	chr16:2301216-2301568(-)$1	352	79	93	26.2708
AGGGCUGCAGCCGG	chr19:2199729-2199987(+)$1	258	4	18	12.7291
AGAGCCAGGGCUGG	chr7:150935524-150935776(+)$1	252	83	97	14.9166
CGGCCCGGGGGCCG	chrX:119005767-119006024(+)$1	257	221	235	15.6458
cgggccgggccgug	chr16:66785293-66785574(-)$1	281	204	218	16.7916
CGGCCCAGUGCAGG	chr21:33031986-33032246(+)$1	260	131	145	13.3541
CAGCCAGGGGCCGA	chr2:127413716-127413984(+)$1	268	229	243	12.6249
CGGGCCGGCGGCGG	chr12:62996661-62996962(+)$1	301	235	249	18.2500
AGAGCCAGGGCUGG	chr7:150935461-150935697(+)$1	236	146	160	14.9166
CGGGGCGCGGCGCG	chr15:23086213-23086470(-)$1	257	12	26	14.6041
gggcccgggggcgg	chr19:2015300-2015564(-)$1	264	104	118	17.2083
caggcccggcccgg	chr20:35234174-35234466(+)$1	292	150	164	14.4999
AGUGCCGGGGCCCC	chr1:248020654-248020898(+)$1	244	69	83	13.7708
gggcccggggccgc	chr9:101558393-101558726(-)$1	333	118	132	18.1458
CGGGCCGGUGCGUG	chr9:140172989-140173267(+)$1	278	204	218	16.8958
UGGGCGGGGGCCUG	chr16:188103-188410(-)$1	307	274	288	17.2083
GGCGCUGAGGCCGG	chr19:4670136-4670418(-)$1	282	143	157	13.2500
cgggcgguggcggu	chr19:12845223-12845492(-)$1	269	76	90	14.3958
ggggugggggccgg	chr2:54197725-54198044(-)$1	319	65	79	17.9374
ggggccagggccug	chr19:1585102-1585375(-)$1	273	0	14	17.1041
UGGGCAGGGGCUGC	chr9:140348891-140349150(-)$1	259	195	209	15.4374
ccagcgggggcagg	chr1:1257244-1257474(-)$1	230	54	68	13.9791
auggagggggccgg	chr15:90172459-90172726(+)$1	267	103	117	13.4583
cggggcggggccgc	chr9:100819045-100819303(+)$1	258	223	237	20.6458
GGGGGGGGGGCAGG	chr9:139565331-139565569(+)$1	238	153	167	16.5833
CGGGCCGCGGCGGG	chr22:21996524-21996843(+)$1	319	111	125	21.1666
cgagccggggcugg	chr16:69419481-69419729(-)$1	248	73	87	20.7500
cgcgccgcggccgc	chr19:1605260-1605546(-)$1	286	63	77	16.3750
CGUGGCGCGGCCGG	chr5:177019168-177019435(+)$1	267	5	19	16.3749

#otherMatches

#Struct PSSM
:FFFFFFKKCCCbb	chr20:2451233-2451515(-)$1	282	2	16	18.9791
}EEEEE::dddd[c	chr5:112196917-112197211(+)$1	294	174	188	12.1041
dqqqqqqqqdddda	chr7:23338916-23339204(+)$1	288	243	257	17.1041
Eiiiiiiiii[ddd	chr7:100172751-100173017(-)$1	266	7	21	15.5416
eIIIIIIIIIKKEE	chr11:236933-237215(+)$1	282	157	171	18.0416
eIIIIIIIIIKKEE	chr11:237015-237245(+)$1	230	75	89	18.0416
g"""bb!!bb[eee	chr4:113066682-113066997(+)$1	315	78	92	15.5416
dd!!cccbbccc[e	chr9:101867382-101867635(+)$1	253	68	82	20.3333
c22dddd]eeeee]	chr3:45730838-45731090(+)$1	252	73	87	21.8958
B}JJJJJJJJJJJJ	chr1:84971604-84971885(-)$1	281	258	272	17.9374
]hhhhhhhh::ddd	chr7:100172817-100173059(-)$1	242	49	63	15.5416
nnnggggggg:ccc	chr1:52195410-52195765(+)$1	355	46	60	16.8958
ggggggg!!ccc[c	chr9:99180180-99180411(-)$1	231	59	73	20.3333
dddd!!ffffff[b	chr19:1388421-1388685(+)$1	264	59	73	12.8333
eeee:::IIIIIII	chr1:12227060-12227331(+)$1	271	235	249	14.3958
EEEEE{EEEEE{BB	chr10:75579268-75579558(-)$1	290	58	72	13.8750
F:CCCKKEEEEEMM	chr6:32157447-32157877(-)$1	430	216	230	19.6041
GKKBB{EEEEEA{C	chr13:113863753-113864052(+)$1	299	70	84	21.8958
dddd]ccc]a]bb4	chr1:161087641-161087866(-)$1	225	91	105	14.6041
bb]hhhhhhhh:ff	chr16:2301216-2301568(-)$1	352	79	93	26.2708
::cccmmmmccc:e	chr19:2199729-2199987(+)$1	258	4	18	12.7291
:eeeee[eeeee""	chr7:150935524-150935776(+)$1	252	83	97	14.9166
hhhhhhhddddmmm	chrX:119005767-119006024(+)$1	257	221	235	15.6458
gJJJJJJJJJJJJ:	chr16:66785293-66785574(-)$1	281	204	218	16.7916
G:ddddoooooodd	chr21:33031986-33032246(+)$1	260	131	145	13.3541
B?????EEEEE|||	chr2:127413716-127413984(+)$1	268	229	243	12.6249
ccffffff:EEEEE	chr12:62996661-62996962(+)$1	301	235	249	18.2500
555eeeeeccceee	chr7:150935461-150935697(+)$1	236	146	160	14.9166
BKKA{CCCHHHHHH	chr15:23086213-23086470(-)$1	257	12	26	14.6041
g=============	chr19:2015300-2015564(-)$1	264	104	118	17.2083
###eeeeellleee	chr20:35234174-35234466(+)$1	292	150	164	14.4999
]ffffff:::::::	chr1:248020654-248020898(+)$1	244	69	83	13.7708
ddddhhhhhhhh[a	chr9:101558393-101558726(-)$1	333	118	132	18.1458
eeeeccc[eeeeec	chr9:140172989-140173267(+)$1	278	204	218	16.8958
hhhh:HHHHHHHHD	chr16:188103-188410(-)$1	307	274	288	17.2083
]ggggggg]cccEE	chr19:4670136-4670418(-)$1	282	143	157	13.2500
hhhhhhhha]addd	chr19:12845223-12845492(-)$1	269	76	90	14.3958
MMMCCC{BB{DDDD	chr2:54197725-54198044(-)$1	319	65	79	17.9374
:ddddmmmmddddE	chr19:1585102-1585375(-)$1	273	0	14	17.1041
ttttttttdddd]e	chr9:140348891-140349150(-)$1	259	195	209	15.4374
cc]bbbb[eeeeef	chr1:1257244-1257474(-)$1	230	54	68	13.9791
((((((((dddd[a	chr15:90172459-90172726(+)$1	267	103	117	13.4583
DDYYDDDDCCCYYE	chr9:100819045-100819303(+)$1	258	223	237	20.6458
}CCC}DDDD}EEEE	chr9:139565331-139565569(+)$1	238	153	167	16.5833
KKGGGGGGGDDDDd	chr22:21996524-21996843(+)$1	319	111	125	21.1666
bb[eeeee!!====	chr16:69419481-69419729(-)$1	248	73	87	20.7500
ee[bbmmmmbbeee	chr19:1605260-1605546(-)$1	286	63	77	16.3750
LLA{EEEEEJJJJJ	chr5:177019168-177019435(+)$1	267	5	19	16.3749

#DB
.((((((..(((((	chr20:2451233-2451515(-)$1	1	2	16	18.9791
.)))))..((((.(	chr5:112196917-112197211(+)$1	1	174	188	12.1041
(........)))))	chr7:23338916-23339204(+)$1	1	243	257	17.1041
((((((((((.(((	chr7:100172751-100173017(-)$1	1	7	21	15.5416
)(((((((((..((	chr11:236933-237215(+)$1	1	157	171	18.0416
)(((((((((..((	chr11:237015-237245(+)$1	1	75	89	18.0416
(...((..((.(((	chr4:113066682-113066997(+)$1	1	78	92	15.5416
((..((((((((.(	chr9:101867382-101867635(+)$1	1	68	82	20.3333
)..)))).))))).	chr3:45730838-45731090(+)$1	1	73	87	21.8958
).))))))))))))	chr1:84971604-84971885(-)$1	1	258	272	17.9374
.))))))))..(((	chr7:100172817-100173059(-)$1	1	49	63	15.5416
...))))))).(((	chr1:52195410-52195765(+)$1	1	46	60	16.8958
(((((((..(((.(	chr9:99180180-99180411(-)$1	1	59	73	20.3333
((((..((((((.(	chr19:1388421-1388685(+)$1	1	59	73	12.8333
))))...)))))))	chr1:12227060-12227331(+)$1	1	235	249	14.3958
(((((.(((((.((	chr10:75579268-75579558(-)$1	1	58	72	13.8750
).(((..(((((..	chr6:32157447-32157877(-)$1	1	216	230	19.6041
(..((.((((((.(	chr13:113863753-113864052(+)$1	1	70	84	21.8958
)))).))).).)).	chr1:161087641-161087866(-)$1	1	91	105	14.6041
)).)))))))).((	chr16:2301216-2301568(-)$1	1	79	93	26.2708
..(((....))).(	chr19:2199729-2199987(+)$1	1	4	18	12.7291
.(((((.(((((..	chr7:150935524-150935776(+)$1	1	83	97	14.9166
(((((((((((...	chrX:119005767-119006024(+)$1	1	221	235	15.6458
))))))))))))).	chr16:66785293-66785574(-)$1	1	204	218	16.7916
(.((((......))	chr21:33031986-33032246(+)$1	1	131	145	13.3541
).....)))))...	chr2:127413716-127413984(+)$1	1	229	243	12.6249
)))))))).)))))	chr12:62996661-62996962(+)$1	1	235	249	18.2500
...)))))((((((	chr7:150935461-150935697(+)$1	1	146	160	14.9166
(..(.(((((((((	chr15:23086213-23086470(-)$1	1	12	26	14.6041
))))))))))))))	chr19:2015300-2015564(-)$1	1	104	118	17.2083
...(((((...)))	chr20:35234174-35234466(+)$1	1	150	164	14.4999
.)))))).......	chr1:248020654-248020898(+)$1	1	69	83	13.7708
((((((((((((.(	chr9:101558393-101558726(-)$1	1	118	132	18.1458
))))(((.((((((	chr9:140172989-140173267(+)$1	1	204	218	16.8958
)))).)))))))))	chr16:188103-188410(-)$1	1	274	288	17.2083
.))))))).)))))	chr19:4670136-4670418(-)$1	1	143	157	13.2500
))))))))).))))	chr19:12845223-12845492(-)$1	1	76	90	14.3958
...(((.((.((((	chr2:54197725-54198044(-)$1	1	65	79	17.9374
.((((....))))(	chr19:1585102-1585375(-)$1	1	0	14	17.1041
........)))).)	chr9:140348891-140349150(-)$1	1	195	209	15.4374
)).))((.((((((	chr1:1257244-1257474(-)$1	1	54	68	13.9791
........((((.(	chr15:90172459-90172726(+)$1	1	103	117	13.4583
))..)))))))..)	chr9:100819045-100819303(+)$1	1	223	237	20.6458
.))).)))).))))	chr9:139565331-139565569(+)$1	1	153	167	16.5833
..((((((((((((	chr22:21996524-21996843(+)$1	1	111	125	21.1666
((.(((((..((((	chr16:69419481-69419729(-)$1	1	73	87	20.7500
((.((....)))))	chr19:1605260-1605546(-)$1	1	63	77	16.3750
..(.((((((((((	chr5:177019168-177019435(+)$1	1	5	19	16.3749

#PSSM
C : 0.37	c : 0.25	A : 0.12	G : 0.10	g : 0.08	U : 0.04	a : 0.02	
G : 0.62	g : 0.25	u : 0.04	a : 0.04	A : 0.02	c : 0.02	
G : 0.47	g : 0.29	A : 0.06	U : 0.06	C : 0.04	a : 0.04	c : 0.02	
G : 0.45	g : 0.33	C : 0.12	U : 0.04	c : 0.04	
C : 0.49	c : 0.25	G : 0.10	g : 0.08	U : 0.02	u : 0.02	a : 0.02	
C : 0.43	c : 0.25	g : 0.12	A : 0.10	U : 0.04	G : 0.04	
G : 0.43	g : 0.33	C : 0.08	A : 0.06	U : 0.04	c : 0.02	a : 0.02	
G : 0.49	g : 0.33	C : 0.10	A : 0.02	u : 0.02	c : 0.02	
G : 0.54	g : 0.35	U : 0.04	c : 0.02	A : 0.02	C : 0.02	
G : 0.62	g : 0.31	c : 0.06	
C : 0.47	c : 0.33	A : 0.06	U : 0.04	G : 0.04	a : 0.02	g : 0.02	
C : 0.33	c : 0.20	g : 0.12	G : 0.10	A : 0.10	U : 0.08	a : 0.02	u : 0.02	
G : 0.47	g : 0.33	U : 0.06	C : 0.06	u : 0.04	A : 0.02	
G : 0.45	g : 0.29	C : 0.12	c : 0.06	A : 0.04	u : 0.02	

#score	800.791666666667
#seq	48
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_CDS_m1_run1.nuc.txt

#NT
UGUU	chr9:123202121-123202413(-)$1	292	23	27	11.9999
UGUU	chr5:179048271-179048511(-)$1	240	99	103	11.9999
UGUU	chr5:179047917-179048173(-)$1	256	90	94	11.9999
UGUU	chr20:57569542-57569798(+)$1	256	107	111	11.9999
UGUU	chr2:85770652-85770913(+)$1	261	82	86	11.9999
UGUU	chr3:49051478-49051744(+)$1	266	150	154	11.9999
UGUU	chr3:172025002-172025263(+)$1	261	54	58	11.9999
UGUU	chr12:132198465-132198728(+)$1	263	18	22	11.9999
UGUU	chr3:42662766-42663028(+)$1	262	27	31	11.9999
UGUU	chr20:39796336-39796594(+)$1	258	146	150	11.9999
UGUU	chr9:117054285-117054525(+)$1	240	8	12	11.9999
UGUU	chr1:70697801-70698069(+)$1	268	86	90	11.9999
UGUU	chr16:89836543-89836834(-)$1	291	54	58	11.9999
UGUU	chr20:42087683-42087927(+)$1	244	31	35	11.9999
UGUU	chr3:184082592-184082887(+)$1	295	88	92	11.9999
UGUU	chr17:74308988-74309253(-)$1	265	118	122	11.9999
UGUU	chr5:135382388-135382640(+)$1	252	72	76	11.9999
UGUU	chr1:19431020-19431308(-)$1	288	141	145	11.9999
UGUU	chr20:62338329-62338606(-)$1	277	142	146	11.9999
UGUU	chr16:546658-546950(+)$1	292	125	129	11.9999
UGUU	chr16:89976840-89977113(+)$1	273	208	212	11.9999
UGUU	chr8:145742468-145742753(-)$1	285	164	168	11.9999
UGUU	chr3:15091300-15091604(-)$1	304	0	4	11.9999

#otherMatches

#Struct PSSM
EEEE	chr6:43495813-43496097(-)$1	284	102	106	11.9999
b[dd	chr9:123202121-123202413(-)$1	292	23	27	11.9999
2ddd	chr5:179048271-179048511(-)$1	240	99	103	11.9999
gggg	chr5:179047917-179048173(-)$1	256	90	94	11.9999
gggg	chr20:57569542-57569798(+)$1	256	107	111	11.9999
LLLB	chr2:85770652-85770913(+)$1	261	82	86	11.9999
nfff	chr3:49051478-49051744(+)$1	266	150	154	11.9999
fffo	chr3:172025002-172025263(+)$1	261	54	58	11.9999
[ccc	chr12:132198465-132198728(+)$1	263	18	22	11.9999
"""e	chr3:42662766-42663028(+)$1	262	27	31	11.9999
i$$$	chr20:39796336-39796594(+)$1	258	146	150	11.9999
FFKK	chr9:117054285-117054525(+)$1	240	8	12	11.9999
b(((	chr1:70697801-70698069(+)$1	268	86	90	11.9999
FFFF	chr16:89836543-89836834(-)$1	291	54	58	11.9999
Hfff	chr20:42087683-42087927(+)$1	244	31	35	11.9999
]aff	chr3:184082592-184082887(+)$1	295	88	92	11.9999
qqqq	chr17:74308988-74309253(-)$1	265	118	122	11.9999
ccc$	chr5:135382388-135382640(+)$1	252	72	76	11.9999
:HHH	chr1:19431020-19431308(-)$1	288	141	145	11.9999
DDDD	chr20:62338329-62338606(-)$1	277	142	146	11.9999
ddd:	chr16:546658-546950(+)$1	292	125	129	11.9999
EE||	chr16:89976840-89977113(+)$1	273	208	212	11.9999
ccc[	chr8:145742468-145742753(-)$1	285	164	168	11.9999
::::	chr3:15091300-15091604(-)$1	304	0	4	11.9999

#DB
((((	chr6:43495813-43496097(-)$1	1	102	106	11.9999
(.((	chr9:123202121-123202413(-)$1	1	23	27	11.9999
.)))	chr5:179048271-179048511(-)$1	1	99	103	11.9999
))))	chr5:179047917-179048173(-)$1	1	90	94	11.9999
((((	chr20:57569542-57569798(+)$1	1	107	111	11.9999
...(	chr2:85770652-85770913(+)$1	1	82	86	11.9999
.)))	chr3:49051478-49051744(+)$1	1	150	154	11.9999
(((.	chr3:172025002-172025263(+)$1	1	54	58	11.9999
.(((	chr12:132198465-132198728(+)$1	1	18	22	11.9999
...(	chr3:42662766-42663028(+)$1	1	27	31	11.9999
(...	chr20:39796336-39796594(+)$1	1	146	150	11.9999
((..	chr9:117054285-117054525(+)$1	1	8	12	11.9999
(...	chr1:70697801-70698069(+)$1	1	86	90	11.9999
((((	chr16:89836543-89836834(-)$1	1	54	58	11.9999
((((	chr20:42087683-42087927(+)$1	1	31	35	11.9999
.)))	chr3:184082592-184082887(+)$1	1	88	92	11.9999
....	chr17:74308988-74309253(-)$1	1	118	122	11.9999
(((.	chr5:135382388-135382640(+)$1	1	72	76	11.9999
.(((	chr1:19431020-19431308(-)$1	1	141	145	11.9999
((((	chr20:62338329-62338606(-)$1	1	142	146	11.9999
))).	chr16:546658-546950(+)$1	1	125	129	11.9999
))..	chr16:89976840-89977113(+)$1	1	208	212	11.9999
(((.	chr8:145742468-145742753(-)$1	1	164	168	11.9999
....	chr3:15091300-15091604(-)$1	1	0	4	11.9999

#PSSM
U : 0.99	
G : 0.99	
U : 0.99	
U : 0.99	

#score	287.99999999999994
#seq	24
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_transcript_m1_run1.nuc.txt

#NT
AAAG	chr7:91690501-91690774(+)$1	273	84	88	12.0000
AAAG	chr9:134079615-134079906(+)$1	291	3	7	12.0000
AAAG	chr19:59057459-59057740(+)$1	281	47	51	12.0000
aaag	chr22:19387988-19388240(-)$1	252	70	74	12.0000
AAAG	chr11:65267488-65267695(+)$1	207	4	8	12.0000
AAAG	chr18:1362153-1362420(-)$1	267	53	57	12.0000
aaag	chr5:77382237-77382570(-)$1	333	115	119	12.0000
aaag	chr22:17091581-17091854(+)$1	273	22	26	12.0000
AAAG	chr8:130561058-130561303(-)$1	245	24	28	12.0000
AAAG	chr1:40703500-40703820(+)$1	320	28	32	12.0000
AAAG	chr8:6576092-6576405(+)$1	313	256	260	12.0000
AAAG	chr3:42680266-42680503(+)$1	237	47	51	12.0000
AAAG	chr17:20788042-20788334(+)$1	292	33	37	12.0000
aaag	chr7:158567867-158568152(-)$1	285	2	6	12.0000
AAAG	chr1:111490755-111491014(-)$1	259	9	13	12.0000
AAAG	chr1:46074123-46074366(+)$1	243	0	4	12.0000
aaag	chr3:152057867-152058133(+)$1	266	62	66	12.0000
aaag	chr7:119345060-119345351(-)$1	291	12	16	12.0000
AAAG	chr21:45453347-45453663(+)$1	316	41	45	12.0000
aaag	chr1:219371137-219371404(+)$1	267	4	8	12.0000
aaag	chr11:95558061-95558317(+)$1	256	90	94	12.0000
AAAG	chr16:20698230-20698495(+)$1	265	20	24	12.0000
AAAG	chr11:65268006-65268208(+)$1	202	74	78	12.0000
aaag	chr7:65366559-65366855(+)$1	296	250	254	12.0000
aaag	chrX:153912991-153913294(-)$1	303	51	55	12.0000
aaag	chr2:168767336-168767626(-)$1	290	97	101	12.0000
AAAG	chr11:65268129-65268331(+)$1	202	91	95	12.0000
aaag	chr18:1365020-1365269(-)$1	249	10	14	12.0000
aaag	chr1:22013120-22013408(-)$1	288	67	71	12.0000
AAAG	chr8:41646244-41646558(-)$1	314	46	50	12.0000
AAAG	chr11:3412852-3413112(+)$1	260	152	156	12.0000
AAAG	chr1:203767359-203767615(+)$1	256	18	22	12.0000
AAAG	chr17:20787401-20787648(+)$1	247	46	50	12.0000
AAAG	chr11:65267454-65267656(+)$1	202	38	42	12.0000
AAAG	chr8:103314686-103314936(-)$1	250	120	124	12.0000
AAAG	chr11:65268050-65268254(+)$1	204	30	34	12.0000
AAAG	chr21:46918149-46918541(+)$1	392	387	391	12.0000
AAAG	chr11:65267959-65268165(+)$1	206	37	41	12.0000
AAAG	chr2:145173478-145173786(-)$1	308	11	15	12.0000
AAAG	chr11:65268095-65268300(+)$1	205	125	129	12.0000
AAAG	chr19:879109-879468(-)$1	359	64	68	12.0000
aaag	chr3:6590707-6590969(+)$1	262	24	28	12.0000
aaag	chr3:43763900-43764164(+)$1	264	151	155	12.0000
AAAG	chr17:68106394-68106716(-)$1	322	48	52	12.0000
aaag	chr21:23607731-23608010(+)$1	279	255	259	12.0000
aaag	chr7:153105560-153105814(-)$1	254	38	42	12.0000
aaag	chr11:65267418-65267633(+)$1	215	8	12	12.0000
aaag	chr4:17934290-17934609(-)$1	319	4	8	12.0000
AAAG	chr22:20912911-20913178(+)$1	267	80	84	12.0000
AAAG	chr7:119438533-119438790(-)$1	257	132	136	12.0000
AAAG	chr7:129742850-129743144(+)$1	294	11	15	12.0000
aaag	chr3:33588975-33589278(-)$1	303	16	20	12.0000
AAAG	chr9:136148942-136149228(-)$1	286	0	4	12.0000
AAAG	chr1:111494799-111495117(-)$1	318	11	15	12.0000
AAAG	chr8:124266895-124267183(-)$1	288	279	283	12.0000
aaag	chr11:5482700-5483012(-)$1	312	168	172	12.0000
AAAG	chr2:152319594-152319919(+)$1	325	229	233	12.0000
AAAG	chr1:29506338-29506583(-)$1	245	79	83	12.0000
AAAG	chr11:65267477-65267688(+)$1	211	15	19	12.0000
AAAG	chr1:22008543-22008862(-)$1	319	55	59	12.0000
aaag	chr3:10349679-10349981(-)$1	302	217	221	12.0000
AAAG	chr11:3413036-3413325(+)$1	289	269	273	12.0000
AAAG	chr1:219372706-219372941(+)$1	235	58	62	12.0000
AAAG	chr11:65268002-65268206(+)$1	204	78	82	12.0000
aaag	chr8:130523932-130524237(-)$1	305	64	68	12.0000
aaag	chr4:17934146-17934415(-)$1	269	110	114	12.0000
aaag	chr7:153104624-153104921(-)$1	297	88	92	12.0000
AAAG	chr11:65267972-65268176(+)$1	204	24	28	12.0000
AAAG	chr11:65267437-65267647(+)$1	210	55	59	12.0000
aaag	chr3:33588909-33589172(-)$1	263	85	89	12.0000
aaag	chr9:134082663-134082934(+)$1	271	243	247	12.0000
aaag	chr7:129101925-129102239(+)$1	314	37	41	12.0000
AAAG	chr16:24802489-24802749(+)$1	260	251	255	12.0000
aaag	chr7:119526059-119526342(-)$1	283	181	185	12.0000
aaag	chr14:102267473-102267750(+)$1	277	52	56	12.0000
AAAG	chr11:65268100-65268307(+)$1	207	120	124	12.0000
AAAG	chr1:29505096-29505374(-)$1	278	16	20	12.0000
AAAG	chr19:28980651-28980900(-)$1	249	34	38	12.0000
AAAG	chr2:55253818-55254056(-)$1	238	10	14	12.0000
AAAG	chr11:65267456-65267665(+)$1	209	36	40	12.0000
aaag	chr4:56462952-56463204(-)$1	252	12	16	12.0000
AAAG	chr11:5489486-5489786(-)$1	300	90	94	12.0000

#otherMatches

#Struct PSSM
:ccc	chr7:119436991-119437300(-)$1	309	53	57	12.0000
!ggg	chr7:91690501-91690774(+)$1	273	84	88	12.0000
ddqq	chr9:134079615-134079906(+)$1	291	3	7	12.0000
"""h	chr19:59057459-59057740(+)$1	281	47	51	12.0000
ssss	chr22:19387988-19388240(-)$1	252	70	74	12.0000
JJJJ	chr11:65267488-65267695(+)$1	207	4	8	12.0000
##gg	chr18:1362153-1362420(-)$1	267	53	57	12.0000
ssss	chr5:77382237-77382570(-)$1	333	115	119	12.0000
###g	chr22:17091581-17091854(+)$1	273	22	26	12.0000
RRCC	chr8:130561058-130561303(-)$1	245	24	28	12.0000
KBBG	chr1:40703500-40703820(+)$1	320	28	32	12.0000
:::D	chr8:6576092-6576405(+)$1	313	256	260	12.0000
wwww	chr3:42680266-42680503(+)$1	237	47	51	12.0000
::::	chr17:20788042-20788334(+)$1	292	33	37	12.0000
::dd	chr7:158567867-158568152(-)$1	285	2	6	12.0000
::::	chr1:111490755-111491014(-)$1	259	9	13	12.0000
::::	chr1:46074123-46074366(+)$1	243	0	4	12.0000
::::	chr3:152057867-152058133(+)$1	266	62	66	12.0000
::::	chr7:119345060-119345351(-)$1	291	12	16	12.0000
LLDD	chr21:45453347-45453663(+)$1	316	41	45	12.0000
::CC	chr1:219371137-219371404(+)$1	267	4	8	12.0000
rrgg	chr11:95558061-95558317(+)$1	256	90	94	12.0000
====	chr16:20698230-20698495(+)$1	265	20	24	12.0000
::::	chr11:65268006-65268208(+)$1	202	74	78	12.0000
8888	chr7:65366559-65366855(+)$1	296	250	254	12.0000
::::	chrX:153912991-153913294(-)$1	303	51	55	12.0000
vvvv	chr2:168767336-168767626(-)$1	290	97	101	12.0000
nnnn	chr11:65268129-65268331(+)$1	202	91	95	12.0000
::::	chr18:1365020-1365269(-)$1	249	10	14	12.0000
(((d	chr1:22013120-22013408(-)$1	288	67	71	12.0000
!eee	chr8:41646244-41646558(-)$1	314	46	50	12.0000
====	chr11:3412852-3413112(+)$1	260	152	156	12.0000
33bb	chr1:203767359-203767615(+)$1	256	18	22	12.0000
((((	chr17:20787401-20787648(+)$1	247	46	50	12.0000
!ddd	chr11:65267454-65267656(+)$1	202	38	42	12.0000
:::E	chr8:103314686-103314936(-)$1	250	120	124	12.0000
::::	chr11:65268050-65268254(+)$1	204	30	34	12.0000
::::	chr21:46918149-46918541(+)$1	392	387	391	12.0000
oooo	chr11:65267959-65268165(+)$1	206	37	41	12.0000
:::E	chr2:145173478-145173786(-)$1	308	11	15	12.0000
nnnn	chr11:65268095-65268300(+)$1	205	125	129	12.0000
44a]	chr19:879109-879468(-)$1	359	64	68	12.0000
tttt	chr3:6590707-6590969(+)$1	262	24	28	12.0000
333c	chr3:43763900-43764164(+)$1	264	151	155	12.0000
::ee	chr17:68106394-68106716(-)$1	322	48	52	12.0000
rrrf	chr21:23607731-23608010(+)$1	279	255	259	12.0000
###c	chr7:153105560-153105814(-)$1	254	38	42	12.0000
:::e	chr11:65267418-65267633(+)$1	215	8	12	12.0000
EEEE	chr4:17934290-17934609(-)$1	319	4	8	12.0000
::cc	chr22:20912911-20913178(+)$1	267	80	84	12.0000
lccc	chr7:119438533-119438790(-)$1	257	132	136	12.0000
nnnn	chr7:129742850-129743144(+)$1	294	11	15	12.0000
::::	chr3:33588975-33589278(-)$1	303	16	20	12.0000
:::D	chr9:136148942-136149228(-)$1	286	0	4	12.0000
MDDD	chr1:111494799-111495117(-)$1	318	11	15	12.0000
::::	chr8:124266895-124267183(-)$1	288	279	283	12.0000
:::c	chr11:5482700-5483012(-)$1	312	168	172	12.0000
]ddd	chr2:152319594-152319919(+)$1	325	229	233	12.0000
22dd	chr1:29506338-29506583(-)$1	245	79	83	12.0000
JJJJ	chr11:65267477-65267688(+)$1	211	15	19	12.0000
c"""	chr1:22008543-22008862(-)$1	319	55	59	12.0000
gggg	chr3:10349679-10349981(-)$1	302	217	221	12.0000
~~II	chr11:3413036-3413325(+)$1	289	269	273	12.0000
uuuu	chr1:219372706-219372941(+)$1	235	58	62	12.0000
::::	chr11:65268002-65268206(+)$1	204	78	82	12.0000
!!dd	chr8:130523932-130524237(-)$1	305	64	68	12.0000
nnnb	chr4:17934146-17934415(-)$1	269	110	114	12.0000
gggg	chr7:153104624-153104921(-)$1	297	88	92	12.0000
oooo	chr11:65267972-65268176(+)$1	204	24	28	12.0000
!ddd	chr11:65267437-65267647(+)$1	210	55	59	12.0000
::::	chr3:33588909-33589172(-)$1	263	85	89	12.0000
555g	chr9:134082663-134082934(+)$1	271	243	247	12.0000
ffff	chr7:129101925-129102239(+)$1	314	37	41	12.0000
::::	chr16:24802489-24802749(+)$1	260	251	255	12.0000
33ff	chr7:119526059-119526342(-)$1	283	181	185	12.0000
c[ii	chr14:102267473-102267750(+)$1	277	52	56	12.0000
nnnn	chr11:65268100-65268307(+)$1	207	120	124	12.0000
KKFF	chr1:29505096-29505374(-)$1	278	16	20	12.0000
ppff	chr19:28980651-28980900(-)$1	249	34	38	12.0000
::::	chr2:55253818-55254056(-)$1	238	10	14	12.0000
!ddd	chr11:65267456-65267665(+)$1	209	36	40	12.0000
II::	chr4:56462952-56463204(-)$1	252	12	16	12.0000
!!a[	chr11:5489486-5489786(-)$1	300	90	94	12.0000

#DB
.(((	chr7:119436991-119437300(-)$1	1	53	57	12.0000
.(((	chr7:91690501-91690774(+)$1	1	84	88	12.0000
((..	chr9:134079615-134079906(+)$1	1	3	7	12.0000
...(	chr19:59057459-59057740(+)$1	1	47	51	12.0000
....	chr22:19387988-19388240(-)$1	1	70	74	12.0000
((((	chr11:65267488-65267695(+)$1	1	4	8	12.0000
..((	chr18:1362153-1362420(-)$1	1	53	57	12.0000
....	chr5:77382237-77382570(-)$1	1	115	119	12.0000
...(	chr22:17091581-17091854(+)$1	1	22	26	12.0000
..((	chr8:130561058-130561303(-)$1	1	24	28	12.0000
.(((	chr1:40703500-40703820(+)$1	1	28	32	12.0000
...)	chr8:6576092-6576405(+)$1	1	256	260	12.0000
....	chr3:42680266-42680503(+)$1	1	47	51	12.0000
....	chr17:20788042-20788334(+)$1	1	33	37	12.0000
..((	chr7:158567867-158568152(-)$1	1	2	6	12.0000
....	chr1:111490755-111491014(-)$1	1	9	13	12.0000
....	chr1:46074123-46074366(+)$1	1	0	4	12.0000
....	chr3:152057867-152058133(+)$1	1	62	66	12.0000
....	chr7:119345060-119345351(-)$1	1	12	16	12.0000
..((	chr21:45453347-45453663(+)$1	1	41	45	12.0000
..((	chr1:219371137-219371404(+)$1	1	4	8	12.0000
..))	chr11:95558061-95558317(+)$1	1	90	94	12.0000
((((	chr16:20698230-20698495(+)$1	1	20	24	12.0000
....	chr11:65268006-65268208(+)$1	1	74	78	12.0000
....	chr7:65366559-65366855(+)$1	1	250	254	12.0000
....	chrX:153912991-153913294(-)$1	1	51	55	12.0000
....	chr2:168767336-168767626(-)$1	1	97	101	12.0000
....	chr11:65268129-65268331(+)$1	1	91	95	12.0000
....	chr18:1365020-1365269(-)$1	1	10	14	12.0000
...(	chr1:22013120-22013408(-)$1	1	67	71	12.0000
.(((	chr8:41646244-41646558(-)$1	1	46	50	12.0000
))))	chr11:3412852-3413112(+)$1	1	152	156	12.0000
..))	chr1:203767359-203767615(+)$1	1	18	22	12.0000
....	chr17:20787401-20787648(+)$1	1	46	50	12.0000
.(((	chr11:65267454-65267656(+)$1	1	38	42	12.0000
...)	chr8:103314686-103314936(-)$1	1	120	124	12.0000
....	chr11:65268050-65268254(+)$1	1	30	34	12.0000
....	chr21:46918149-46918541(+)$1	1	387	391	12.0000
....	chr11:65267959-65268165(+)$1	1	37	41	12.0000
...(	chr2:145173478-145173786(-)$1	1	11	15	12.0000
....	chr11:65268095-65268300(+)$1	1	125	129	12.0000
..).	chr19:879109-879468(-)$1	1	64	68	12.0000
....	chr3:6590707-6590969(+)$1	1	24	28	12.0000
...)	chr3:43763900-43764164(+)$1	1	151	155	12.0000
..((	chr17:68106394-68106716(-)$1	1	48	52	12.0000
...)	chr21:23607731-23608010(+)$1	1	255	259	12.0000
...(	chr7:153105560-153105814(-)$1	1	38	42	12.0000
...(	chr11:65267418-65267633(+)$1	1	8	12	12.0000
((((	chr4:17934290-17934609(-)$1	1	4	8	12.0000
..((	chr22:20912911-20913178(+)$1	1	80	84	12.0000
.)))	chr7:119438533-119438790(-)$1	1	132	136	12.0000
....	chr7:129742850-129743144(+)$1	1	11	15	12.0000
....	chr3:33588975-33589278(-)$1	1	16	20	12.0000
...(	chr9:136148942-136149228(-)$1	1	0	4	12.0000
.(((	chr1:111494799-111495117(-)$1	1	11	15	12.0000
....	chr8:124266895-124267183(-)$1	1	279	283	12.0000
...(	chr11:5482700-5483012(-)$1	1	168	172	12.0000
.)))	chr2:152319594-152319919(+)$1	1	229	233	12.0000
..))	chr1:29506338-29506583(-)$1	1	79	83	12.0000
((((	chr11:65267477-65267688(+)$1	1	15	19	12.0000
(...	chr1:22008543-22008862(-)$1	1	55	59	12.0000
((((	chr3:10349679-10349981(-)$1	1	217	221	12.0000
..))	chr11:3413036-3413325(+)$1	1	269	273	12.0000
....	chr1:219372706-219372941(+)$1	1	58	62	12.0000
....	chr11:65268002-65268206(+)$1	1	78	82	12.0000
..((	chr8:130523932-130524237(-)$1	1	64	68	12.0000
...)	chr4:17934146-17934415(-)$1	1	110	114	12.0000
))))	chr7:153104624-153104921(-)$1	1	88	92	12.0000
....	chr11:65267972-65268176(+)$1	1	24	28	12.0000
.(((	chr11:65267437-65267647(+)$1	1	55	59	12.0000
....	chr3:33588909-33589172(-)$1	1	85	89	12.0000
...)	chr9:134082663-134082934(+)$1	1	243	247	12.0000
((((	chr7:129101925-129102239(+)$1	1	37	41	12.0000
....	chr16:24802489-24802749(+)$1	1	251	255	12.0000
..))	chr7:119526059-119526342(-)$1	1	181	185	12.0000
(.((	chr14:102267473-102267750(+)$1	1	52	56	12.0000
....	chr11:65268100-65268307(+)$1	1	120	124	12.0000
..((	chr1:29505096-29505374(-)$1	1	16	20	12.0000
..))	chr19:28980651-28980900(-)$1	1	34	38	12.0000
....	chr2:55253818-55254056(-)$1	1	10	14	12.0000
.(((	chr11:65267456-65267665(+)$1	1	36	40	12.0000
((..	chr4:56462952-56463204(-)$1	1	12	16	12.0000
..(.	chr11:5489486-5489786(-)$1	1	90	94	12.0000

#PSSM
A : 0.61	a : 0.38	
A : 0.61	a : 0.38	
A : 0.61	a : 0.38	
G : 0.61	g : 0.38	

#score	996.0
#seq	83
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_CDS_m1_run2.nuc.txt

#NT
AAUUUU	chr12:69107458-69107714(+)$1	256	192	198	18.0000
AAUUUU	chr17:4192545-4192945(-)$1	400	232	238	18.0000
AAUUUU	chr2:24051418-24051841(-)$1	423	140	146	18.0000
AAUUUU	chr2:113404939-113405167(+)$1	228	128	134	18.0000
AAUUUU	chr14:55615299-55615550(-)$1	251	91	97	18.0000
AAUUUU	chr10:15828369-15828662(-)$1	293	86	92	18.0000
AAUUUU	chr13:39616057-39616393(+)$1	336	101	107	18.0000
AAUUUU	chrX:13337333-13337569(+)$1	236	133	139	18.0000
AAUUUU	chr10:32097997-32098279(-)$1	282	187	193	18.0000
AAUUUU	chr11:20413696-20413957(+)$1	261	66	72	18.0000
AAUUUU	chr8:30924577-30924847(+)$1	270	189	195	18.0000
AAUUUU	chr2:230675657-230675968(-)$1	311	19	25	18.0000
AAUUUU	chr9:79936221-79936513(+)$1	292	140	146	18.0000
AAUUUU	chr5:162918058-162918329(+)$1	271	209	215	18.0000
AAUUUU	chr6:131917399-131917774(-)$1	375	357	363	18.0000
AAUUUU	chr11:46810050-46810338(-)$1	288	99	105	18.0000
AAUUUU	chr6:155094965-155095239(+)$1	274	251	257	18.0000
aauuuu	chr3:150282818-150283078(+)$1	260	96	102	18.0000
AAUUUU	chr1:227504515-227504816(-)$1	301	121	127	18.0000
AAUUUU	chr2:39281648-39281889(-)$1	241	234	240	18.0000
AAUUUU	chr10:70191808-70192066(-)$1	258	135	141	18.0000
aauuuu	chr3:33876611-33876855(+)$1	244	122	128	18.0000
AAUUUU	chr7:148514783-148515087(-)$1	304	200	206	18.0000
AAUUUU	chr12:40037594-40037892(+)$1	298	199	205	18.0000
AAUUUU	chr12:50397986-50398238(-)$1	252	96	102	18.0000
AAUUUU	chr10:70958193-70958474(+)$1	281	259	265	18.0000
AAUUUU	chr3:108284154-108284436(-)$1	282	66	72	18.0000
AAUUUU	chr1:22405060-22405320(+)$1	260	97	103	18.0000
AAUUUU	chr2:179478297-179478617(+)$1	320	26	32	18.0000
AAUUUU	chr17:5265959-5266309(+)$1	350	229	235	18.0000
AAUUUU	chr6:161491511-161491768(+)$1	257	17	23	18.0000
AAUUUU	chr1:155774557-155774849(-)$1	292	161	167	18.0000
AAUUUU	chr3:148782547-148782800(-)$1	253	232	238	18.0000
AAUUUU	chr11:118355402-118355691(+)$1	289	92	98	18.0000
AAUUUU	chr2:48040235-48040463(-)$1	228	102	108	18.0000
AAUUUU	chr4:502638-502967(+)$1	329	185	191	18.0000
AAUUUU	chr18:12535275-12535589(-)$1	314	191	197	18.0000
AAUUUU	chr10:70096977-70097250(+)$1	273	149	155	18.0000
AAUUUU	chr3:122942297-122942559(+)$1	262	77	83	18.0000

#otherMatches

#Struct PSSM
hhh:::	chr17:62914700-62914993(-)$1	293	284	290	18.0000
eemmmm	chr12:69107458-69107714(+)$1	256	192	198	18.0000
::::::	chr17:4192545-4192945(-)$1	400	232	238	18.0000
ccccmm	chr2:24051418-24051841(-)$1	423	140	146	18.0000
tttttf	chr2:113404939-113405167(+)$1	228	128	134	18.0000
fffooo	chr14:55615299-55615550(-)$1	251	91	97	18.0000
((((((	chr10:15828369-15828662(-)$1	293	86	92	18.0000
eee###	chr13:39616057-39616393(+)$1	336	101	107	18.0000
ccc777	chrX:13337333-13337569(+)$1	236	133	139	18.0000
nnnnff	chr10:32097997-32098279(-)$1	282	187	193	18.0000
C:::::	chr11:20413696-20413957(+)$1	261	66	72	18.0000
:::::b	chr8:30924577-30924847(+)$1	270	189	195	18.0000
:=====	chr2:230675657-230675968(-)$1	311	19	25	18.0000
dd]bb5	chr9:79936221-79936513(+)$1	292	140	146	18.0000
@@@@@@	chr5:162918058-162918329(+)$1	271	209	215	18.0000
GGGGG~	chr6:131917399-131917774(-)$1	375	357	363	18.0000
yyyygg	chr11:46810050-46810338(-)$1	288	99	105	18.0000
ooooff	chr6:155094965-155095239(+)$1	274	251	257	18.0000
eeee[d	chr3:150282818-150283078(+)$1	260	96	102	18.0000
e::::g	chr1:227504515-227504816(-)$1	301	121	127	18.0000
::::::	chr2:39281648-39281889(-)$1	241	234	240	18.0000
::::::	chr10:70191808-70192066(-)$1	258	135	141	18.0000
i:::::	chr3:33876611-33876855(+)$1	244	122	128	18.0000
hhhhhh	chr7:148514783-148515087(-)$1	304	200	206	18.0000
gggg::	chr12:40037594-40037892(+)$1	298	199	205	18.0000
tttttt	chr12:50397986-50398238(-)$1	252	96	102	18.0000
GGGG::	chr10:70958193-70958474(+)$1	281	259	265	18.0000
c!!ddd	chr3:108284154-108284436(-)$1	282	66	72	18.0000
e"""ff	chr1:22405060-22405320(+)$1	260	97	103	18.0000
####dd	chr2:179478297-179478617(+)$1	320	26	32	18.0000
dppppp	chr17:5265959-5266309(+)$1	350	229	235	18.0000
ff"""f	chr6:161491511-161491768(+)$1	257	17	23	18.0000
\\\\\\	chr1:155774557-155774849(-)$1	292	161	167	18.0000
E_____	chr3:148782547-148782800(-)$1	253	232	238	18.0000
5ggggg	chr11:118355402-118355691(+)$1	289	92	98	18.0000
gg333d	chr2:48040235-48040463(-)$1	228	102	108	18.0000
pppppp	chr4:502638-502967(+)$1	329	185	191	18.0000
hhhhhh	chr18:12535275-12535589(-)$1	314	191	197	18.0000
>>>>>>	chr10:70096977-70097250(+)$1	273	149	155	18.0000
rrrree	chr3:122942297-122942559(+)$1	262	77	83	18.0000

#DB
)))...	chr17:62914700-62914993(-)$1	1	284	290	18.0000
((....	chr12:69107458-69107714(+)$1	1	192	198	18.0000
......	chr17:4192545-4192945(-)$1	1	232	238	18.0000
((((..	chr2:24051418-24051841(-)$1	1	140	146	18.0000
.....)	chr2:113404939-113405167(+)$1	1	128	134	18.0000
(((...	chr14:55615299-55615550(-)$1	1	91	97	18.0000
......	chr10:15828369-15828662(-)$1	1	86	92	18.0000
(((...	chr13:39616057-39616393(+)$1	1	101	107	18.0000
)))...	chrX:13337333-13337569(+)$1	1	133	139	18.0000
....))	chr10:32097997-32098279(-)$1	1	187	193	18.0000
(.....	chr11:20413696-20413957(+)$1	1	66	72	18.0000
.....(	chr8:30924577-30924847(+)$1	1	189	195	18.0000
.(((((	chr2:230675657-230675968(-)$1	1	19	25	18.0000
)).)).	chr9:79936221-79936513(+)$1	1	140	146	18.0000
......	chr5:162918058-162918329(+)$1	1	209	215	18.0000
))))).	chr6:131917399-131917774(-)$1	1	357	363	18.0000
....))	chr11:46810050-46810338(-)$1	1	99	105	18.0000
....))	chr6:155094965-155095239(+)$1	1	251	257	18.0000
((((.(	chr3:150282818-150283078(+)$1	1	96	102	18.0000
)....(	chr1:227504515-227504816(-)$1	1	121	127	18.0000
......	chr2:39281648-39281889(-)$1	1	234	240	18.0000
......	chr10:70191808-70192066(-)$1	1	135	141	18.0000
).....	chr3:33876611-33876855(+)$1	1	122	128	18.0000
))))))	chr7:148514783-148515087(-)$1	1	200	206	18.0000
))))..	chr12:40037594-40037892(+)$1	1	199	205	18.0000
......	chr12:50397986-50398238(-)$1	1	96	102	18.0000
))))..	chr10:70958193-70958474(+)$1	1	259	265	18.0000
(..(((	chr3:108284154-108284436(-)$1	1	66	72	18.0000
(...((	chr1:22405060-22405320(+)$1	1	97	103	18.0000
....((	chr2:179478297-179478617(+)$1	1	26	32	18.0000
(.....	chr17:5265959-5266309(+)$1	1	229	235	18.0000
((...(	chr6:161491511-161491768(+)$1	1	17	23	18.0000
......	chr1:155774557-155774849(-)$1	1	161	167	18.0000
).....	chr3:148782547-148782800(-)$1	1	232	238	18.0000
.)))))	chr11:118355402-118355691(+)$1	1	92	98	18.0000
))...)	chr2:48040235-48040463(-)$1	1	102	108	18.0000
......	chr4:502638-502967(+)$1	1	185	191	18.0000
((((((	chr18:12535275-12535589(-)$1	1	191	197	18.0000
......	chr10:70096977-70097250(+)$1	1	149	155	18.0000
....))	chr3:122942297-122942559(+)$1	1	77	83	18.0000

#PSSM
A : 0.92	a : 0.07	
A : 0.92	a : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	

#score	720.0000000000001
#seq	40
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_transcript_m3_run1.nuc.txt

#NT
GGGGCCGGG	chr8:121822727-121822991(-)$1	264	95	104	14.6315
GGGGGCGGG	chr5:138629726-138629984(+)$1	258	111	120	18.9298
GGGCGUGGG	chr8:134308699-134308951(-)$1	252	102	111	16.5614
ggggguggg	chr3:171926847-171927114(+)$1	267	65	74	20.5964
GGGAGUGGG	chr17:7477028-7477309(+)$1	281	94	103	16.8245
UGGGGAGGG	chr19:45600418-45600669(+)$1	251	70	79	15.2456
AGGAGUGGG	chr3:66022588-66022839(-)$1	251	107	116	13.3157
AGGGGUGGG	chr20:17662007-17662252(-)$1	245	47	56	17.0877
GGGGGUGGA	chr14:104163934-104164200(+)$1	266	87	96	16.2105
GGGGGUGGG	chr16:23607160-23607493(-)$1	333	104	113	20.5964
CGGGGUGGG	chr9:136797372-136797634(-)$1	262	134	143	16.6491
GGGGGAGGG	chr5:154136434-154136693(+)$1	259	84	93	18.9298
GCgggcggg	chr13:92000160-92000445(+)$1	285	112	121	14.8070
UGGGGUGGG	chr19:1415427-1415690(+)$1	263	71	80	16.9122
GGGGGUGGG	chr17:53354676-53354920(+)$1	244	5	14	20.5964
GGGGGUAGG	chr1:1242478-1242725(-)$1	247	97	106	16.0350
GGCGGUGGG	chr17:74496498-74496769(-)$1	271	139	148	16.2982
GGGUGAGGG	chr11:70926249-70926495(-)$1	246	105	114	14.8947
GGGGGGGGG	chr7:94286984-94287224(+)$1	240	117	126	18.0526
GAGGGCGGG	chr16:88730098-88730365(+)$1	267	75	84	15.0701
GGUGGUGGG	chr11:63894366-63894657(-)$1	291	90	99	16.1228
GGGGGUGGU	chr1:46033889-46034201(+)$1	312	181	190	16.0350
AGGGGAGGG	chr16:50637910-50638160(+)$1	250	71	80	15.4210
AGGGGAGGG	chr15:60884080-60884346(-)$1	266	94	103	15.4210
GGGGAUGGG	chr11:65194140-65194358(+)$1	218	49	58	16.2105
GAGGGAGGG	chr10:74035261-74035511(+)$1	250	79	88	15.0701
GGGGGUGGG	chr3:48586885-48587173(-)$1	288	89	98	20.5964
GAGGGGGGG	chr2:48131397-48131660(-)$1	263	127	136	14.1929
gggggcggg	chr8:144815552-144815839(-)$1	287	22	31	18.9298
AGGGGAGGG	chr16:50637855-50638110(+)$1	255	126	135	15.4210
GGGGGCUGG	chr17:1303071-1303343(-)$1	272	22	31	14.2807
UGGGGUGGG	chr1:44882643-44882927(+)$1	284	60	69	16.9122
GGGGGUGAG	chr8:13133582-13133845(-)$1	263	102	111	15.8596
GGGCGCGGG	chr3:48471150-48471414(-)$1	264	57	66	14.8947
ggcggcggg	chr9:127020423-127020706(+)$1	283	5	14	14.6315
UGGGGUGGG	chr16:2579729-2579975(+)$1	246	83	92	16.9122
GGGGCCGGG	chr17:79962777-79963025(+)$1	248	80	89	14.6315
GGCGGUGGG	chr3:48471268-48471510(-)$1	242	40	49	16.2982
GGGGGUGUG	chr3:171527633-171527953(-)$1	320	261	270	15.8596
GGGGGUGGA	chr17:7747621-7747885(+)$1	264	97	106	16.2105
GGAGGUGGG	chr1:11084610-11084885(+)$1	275	141	150	16.1228
GGGGGUGGG	chr2:242753199-242753453(+)$1	254	95	104	20.5964
gggggaagg	chr2:11725542-11725877(+)$1	335	154	163	14.3684
gaggguggg	chr16:81527934-81528234(+)$1	300	58	67	16.7368
GGGGGAGGG	chr20:60743999-60744271(+)$1	272	120	129	18.9298
GGGAGAGGG	chr20:60623670-60623946(-)$1	276	37	46	15.1578
GGGGCUGGG	chr3:66023348-66023608(-)$1	260	134	143	16.2982
GGGGGAGGG	chr11:129685768-129686028(+)$1	260	142	151	18.9298
GGGGGCGGA	chr3:113464486-113464775(-)$1	289	137	146	14.5438
GGGAGUGGG	chr15:72521844-72522138(-)$1	294	111	120	16.8245
GGGAGUGGG	chr5:34191779-34192024(-)$1	245	59	68	16.8245
GCGGGCGGG	chr17:75454640-75454881(+)$1	241	157	166	14.8070
agggguggg	chr17:6812161-6812480(+)$1	319	119	128	17.0877
GUGGGUGGG	chr1:35647699-35647961(-)$1	262	184	193	16.3859
GAGGGUGGG	chr17:75446138-75446409(+)$1	271	56	65	16.7368
GGGGACGGG	chr2:240320338-240320618(-)$1	280	102	111	14.5438

#otherMatches

#Struct PSSM
33ccc:CCC	chr17:80190210-80190478(+)$1	268	23	32	14.8947
DDD{IIIII	chr8:121822727-121822991(-)$1	264	95	104	14.6315
fff"""bbn	chr5:138629726-138629984(+)$1	258	111	120	18.9298
gggggg[a[	chr8:134308699-134308951(-)$1	252	102	111	16.5614
eeeee]ggg	chr3:171926847-171927114(+)$1	267	65	74	20.5964
3ccc]bb]f	chr17:7477028-7477309(+)$1	281	94	103	16.8245
dqqqqqqqq	chr19:45600418-45600669(+)$1	251	70	79	15.2456
::a[fffff	chr3:66022588-66022839(-)$1	251	107	116	13.3157
mmbb]a]cc	chr20:17662007-17662252(-)$1	245	47	56	17.0877
f[accc$$$	chr14:104163934-104164200(+)$1	266	87	96	16.2105
GGGG{BB{B	chr16:23607160-23607493(-)$1	333	104	113	20.5964
dnnnnnddd	chr9:136797372-136797634(-)$1	262	134	143	16.6491
[bb&&&&&&	chr5:154136434-154136693(+)$1	259	84	93	18.9298
peeeee]a]	chr13:92000160-92000445(+)$1	285	112	121	14.8070
mdddd]bbf	chr19:1415427-1415690(+)$1	263	71	80	16.9122
d!!ccc!!b	chr17:53354676-53354920(+)$1	244	5	14	20.5964
::::eeeee	chr1:1242478-1242725(-)$1	247	97	106	16.0350
JJJJJJJJJ	chr17:74496498-74496769(-)$1	271	139	148	16.2982
FFFFYYCCC	chr11:70926249-70926495(-)$1	246	105	114	14.8947
ccc[dddd[	chr7:94286984-94287224(+)$1	240	117	126	18.0526
=======[a	chr16:88730098-88730365(+)$1	267	75	84	15.0701
J:::::::h	chr11:63894366-63894657(-)$1	291	90	99	16.1228
::bb[a[dd	chr1:46033889-46034201(+)$1	312	181	190	16.0350
dddd]bbff	chr16:50637910-50638160(+)$1	250	71	80	15.4210
EEEEEHHHH	chr15:60884080-60884346(-)$1	266	94	103	15.4210
5ggggggg:	chr11:65194140-65194358(+)$1	218	49	58	16.2105
::CCC}EEE	chr10:74035261-74035511(+)$1	250	79	88	15.0701
fffff22ee	chr3:48586885-48587173(-)$1	288	89	98	20.5964
4bb22aeee	chr2:48131397-48131660(-)$1	263	127	136	14.1929
E{HHHHHHH	chr8:144815552-144815839(-)$1	287	22	31	18.9298
b22bb:JJJ	chr16:50637855-50638110(+)$1	255	126	135	15.4210
MEEEEE:::	chr17:1303071-1303343(-)$1	272	22	31	14.2807
ffffffqqq	chr1:44882643-44882927(+)$1	284	60	69	16.9122
JJJgggggg	chr8:13133582-13133845(-)$1	263	102	111	15.8596
fffa[a"""	chr3:48471150-48471414(-)$1	264	57	66	14.8947
EEEEE{FFF	chr9:127020423-127020706(+)$1	283	5	14	14.6315
HHHHHHCCC	chr16:2579729-2579975(+)$1	246	83	92	16.9122
ffffff[bb	chr17:79962777-79963025(+)$1	248	80	89	14.6315
4bb::eeee	chr3:48471268-48471510(-)$1	242	40	49	16.2982
FFFFDDDDY	chr3:171527633-171527953(-)$1	320	261	270	15.8596
ffff[ccc"	chr17:7747621-7747885(+)$1	264	97	106	16.2105
ddddeeeee	chr1:11084610-11084885(+)$1	275	141	150	16.1228
##bb[a[bb	chr2:242753199-242753453(+)$1	254	95	104	20.5964
eeee(((((	chr2:11725542-11725877(+)$1	335	154	163	14.3684
ffffffggg	chr16:81527934-81528234(+)$1	300	58	67	16.7368
b:dddd[a[	chr20:60743999-60744271(+)$1	272	120	129	18.9298
bbppppppp	chr20:60623670-60623946(-)$1	276	37	46	15.1578
mmmmbb666	chr3:66023348-66023608(-)$1	260	134	143	16.2982
hhh4444ee	chr11:129685768-129686028(+)$1	260	142	151	18.9298
ffffff]dd	chr3:113464486-113464775(-)$1	289	137	146	14.5438
]bb22dddd	chr15:72521844-72522138(-)$1	294	111	120	16.8245
e[a!!====	chr5:34191779-34192024(-)$1	245	59	68	16.8245
fff]ccccc	chr17:75454640-75454881(+)$1	241	157	166	14.8070
KBB{EEEEE	chr17:6812161-6812480(+)$1	319	119	128	17.0877
FFFFFF???	chr1:35647699-35647961(-)$1	262	184	193	16.3859
nnndddd22	chr17:75446138-75446409(+)$1	271	56	65	16.7368
EEEEEKKA{	chr2:240320338-240320618(-)$1	280	102	111	14.5438

#DB
..))).(((	chr17:80190210-80190478(+)$1	1	23	32	14.8947
(((.(((((	chr8:121822727-121822991(-)$1	1	95	104	14.6315
(((...((.	chr5:138629726-138629984(+)$1	1	111	120	18.9298
((((((.(.	chr8:134308699-134308951(-)$1	1	102	111	16.5614
))))).)))	chr3:171926847-171927114(+)$1	1	65	74	20.5964
.))).)).)	chr17:7477028-7477309(+)$1	1	94	103	16.8245
(........	chr19:45600418-45600669(+)$1	1	70	79	15.2456
..(.(((((	chr3:66022588-66022839(-)$1	1	107	116	13.3157
..)).).))	chr20:17662007-17662252(-)$1	1	47	56	17.0877
(.((((...	chr14:104163934-104164200(+)$1	1	87	96	16.2105
((((.((.(	chr16:23607160-23607493(-)$1	1	104	113	20.5964
(.....)))	chr9:136797372-136797634(-)$1	1	134	143	16.6491
.((......	chr5:154136434-154136693(+)$1	1	84	93	18.9298
.))))).).	chr13:92000160-92000445(+)$1	1	112	121	14.8070
.)))).))(	chr19:1415427-1415690(+)$1	1	71	80	16.9122
(..(((..(	chr17:53354676-53354920(+)$1	1	5	14	20.5964
....(((((	chr1:1242478-1242725(-)$1	1	97	106	16.0350
(((((((((	chr17:74496498-74496769(-)$1	1	139	148	16.2982
))))..)))	chr11:70926249-70926495(-)$1	1	105	114	14.8947
(((.((((.	chr7:94286984-94287224(+)$1	1	117	126	18.0526
(((((((.(	chr16:88730098-88730365(+)$1	1	75	84	15.0701
(.......(	chr11:63894366-63894657(-)$1	1	90	99	16.1228
..((.(.((	chr1:46033889-46034201(+)$1	1	181	190	16.0350
)))).))))	chr16:50637910-50638160(+)$1	1	71	80	15.4210
)))))((((	chr15:60884080-60884346(-)$1	1	94	103	15.4210
.))))))).	chr11:65194140-65194358(+)$1	1	49	58	16.2105
..))).)))	chr10:74035261-74035511(+)$1	1	79	88	15.0701
)))))..))	chr3:48586885-48587173(-)$1	1	89	98	20.5964
.))..)(((	chr2:48131397-48131660(-)$1	1	127	136	14.1929
(.(((((((	chr8:144815552-144815839(-)$1	1	22	31	18.9298
)..)).(((	chr16:50637855-50638110(+)$1	1	126	135	15.4210
.(((((...	chr17:1303071-1303343(-)$1	1	22	31	14.2807
((((((...	chr1:44882643-44882927(+)$1	1	60	69	16.9122
(((((((((	chr8:13133582-13133845(-)$1	1	102	111	15.8596
((((.(...	chr3:48471150-48471414(-)$1	1	57	66	14.8947
(((((.(((	chr9:127020423-127020706(+)$1	1	5	14	14.6315
(((((((((	chr16:2579729-2579975(+)$1	1	83	92	16.9122
((((((.((	chr17:79962777-79963025(+)$1	1	80	89	14.6315
.))..((((	chr3:48471268-48471510(-)$1	1	40	49	16.2982
)))))))).	chr3:171527633-171527953(-)$1	1	261	270	15.8596
((((.(((.	chr17:7747621-7747885(+)$1	1	97	106	16.2105
(((((((((	chr1:11084610-11084885(+)$1	1	141	150	16.1228
..((.(.((	chr2:242753199-242753453(+)$1	1	95	104	20.5964
((((.....	chr2:11725542-11725877(+)$1	1	154	163	14.3684
)))))))))	chr16:81527934-81528234(+)$1	1	58	67	16.7368
).((((.(.	chr20:60743999-60744271(+)$1	1	120	129	18.9298
((.......	chr20:60623670-60623946(-)$1	1	37	46	15.1578
....))...	chr3:66023348-66023608(-)$1	1	134	143	16.2982
)))....))	chr11:129685768-129686028(+)$1	1	142	151	18.9298
)))))).))	chr3:113464486-113464775(-)$1	1	137	146	14.5438
.))..))))	chr15:72521844-72522138(-)$1	1	111	120	16.8245
(.(..((((	chr5:34191779-34192024(-)$1	1	59	68	16.8245
))).)))((	chr17:75454640-75454881(+)$1	1	157	166	14.8070
.((.(((((	chr17:6812161-6812480(+)$1	1	119	128	17.0877
))))))...	chr1:35647699-35647961(-)$1	1	184	193	16.3859
...))))..	chr17:75446138-75446409(+)$1	1	56	65	16.7368
(((((..(.	chr2:240320338-240320618(-)$1	1	102	111	14.5438

#PSSM
G : 0.71	g : 0.08	A : 0.08	U : 0.07	C : 0.01	a : 0.01	
G : 0.77	g : 0.08	A : 0.07	C : 0.03	a : 0.01	U : 0.01	
G : 0.80	g : 0.10	C : 0.03	U : 0.01	c : 0.01	A : 0.01	
G : 0.71	g : 0.12	A : 0.08	U : 0.03	C : 0.03	
G : 0.78	g : 0.12	C : 0.05	A : 0.03	
U : 0.49	A : 0.19	C : 0.15	u : 0.05	c : 0.05	G : 0.03	a : 0.01	
G : 0.84	g : 0.10	A : 0.01	U : 0.01	a : 0.01	
G : 0.84	g : 0.12	A : 0.01	U : 0.01	
G : 0.80	g : 0.12	A : 0.05	U : 0.01	

#score	937.9473684210536
#seq	57
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_transcript_m1_run1.nuc.txt

#NT
aauaaaua	chr1:44929116-44929378(+)$1	262	46	54	18.1964
aauaaaca	chr13:98896551-98896778(+)$1	227	73	81	17.6607
aauaaaaa	chr15:68354876-68355174(+)$1	298	78	86	21.4107
aauaaaaa	chr3:60945945-60946170(-)$1	225	60	68	21.4107
AAUAAAAU	chr10:93591858-93592177(+)$1	319	69	77	18.8214
AAUAAAAC	chr5:65451594-65451832(+)$1	238	46	54	18.2857
AAUAAAAU	chr20:34298427-34298714(-)$1	287	88	96	18.8214
aauaaaau	chr3:65858196-65858453(-)$1	257	79	87	18.8214
aauaaaua	chr11:72826461-72826775(-)$1	314	81	89	18.1964
aauaaaaa	chr20:62260013-62260260(+)$1	247	24	32	21.4107
AAUAAAAA	chr8:30404950-30405251(+)$1	301	56	64	21.4107
AAUAAAAG	chr9:84248212-84248446(-)$1	234	40	48	18.1964
aauaaaaU	chr11:92905210-92905499(-)$1	289	70	78	18.8214
AAUAAAAA	chr13:113367769-113368037(+)$1	268	58	66	21.4107
aauaaaaa	chr12:11306893-11307157(-)$1	264	195	203	21.4107
aauaaaua	chr5:95251006-95251273(-)$1	267	71	79	18.1964
aauaaaga	chr22:47506317-47506600(+)$1	283	57	65	17.6607
aauaaaaa	chr6:56988386-56988651(+)$1	265	74	82	21.4107
aauaaaaa	chr17:6897942-6898170(-)$1	228	79	87	21.4107
aauaaaaa	chr19:450099-450415(-)$1	316	76	84	21.4107
aauaaaau	chr2:111994366-111994638(-)$1	272	37	45	18.8214
AAUAAAAA	chr20:34292062-34292290(-)$1	228	23	31	21.4107
aauaaaac	chr14:21842327-21842610(-)$1	283	78	86	18.2857
aauaaaaa	chr5:115507643-115507898(+)$1	255	26	34	21.4107
AAUAAAAA	chr2:54091861-54092094(-)$1	233	85	93	21.4107
aauaaaaa	chr16:11889466-11889736(-)$1	270	58	66	21.4107
AAUAAAUA	chr2:63173467-63173740(+)$1	273	79	87	18.1964
AAUAAAAA	chr6:8081421-8081702(-)$1	281	49	57	21.4107
AAUAAAAA	chr20:44708009-44708271(-)$1	262	17	25	21.4107
AAUAAAAA	chr12:66274175-66274471(+)$1	296	27	35	21.4107
AAUAAAAA	chr20:46157059-46157316(+)$1	257	30	38	21.4107
AAUAAAUA	chr1:21501411-21501701(-)$1	290	71	79	18.1964
AAUAAAAU	chr2:201313185-201313446(+)$1	261	50	58	18.8214
AAUAAAUA	chr13:115047646-115047915(+)$1	269	78	86	18.1964
AAUAAAUA	chr9:19376080-19376343(-)$1	263	69	77	18.1964
AAUAAAAA	chr2:20785785-20786103(-)$1	318	76	84	21.4107
AAUAAACA	chr6:35800645-35800910(-)$1	265	75	83	17.6607
aauaaaau	chr3:136414615-136414871(-)$1	256	41	49	18.8214
aauaaaaa	chr1:174532077-174532337(+)$1	260	61	69	21.4107
AAUAAAAU	chr17:74053095-74053415(-)$1	320	84	92	18.8214
AAUAAAAC	chr22:45133437-45133722(+)$1	285	104	112	18.2857
AAUAAAAU	chr16:67918303-67918608(+)$1	305	92	100	18.8214
AAUAAAAC	chr11:82869667-82869924(+)$1	257	234	242	18.2857
AAUAAAAA	chr9:99255593-99255869(-)$1	276	67	75	21.4107
aauaaaag	chr20:18275325-18275615(+)$1	290	84	92	18.1964
aauaaaaa	chr22:47492660-47492973(+)$1	313	63	71	21.4107
AAUAAAGA	chr8:13037936-13038287(-)$1	351	96	104	17.6607
AAUAAAAA	chr17:76220713-76220992(+)$1	279	44	52	21.4107
AAUAAAAU	chr22:42631349-42631617(-)$1	268	33	41	18.8214
aauaaaaa	chr14:70453257-70453554(+)$1	297	77	85	21.4107
aauaaaua	chr1:94910689-94910975(+)$1	286	8	16	18.1964
aauaaaaa	chr11:68146480-68146764(+)$1	284	42	50	21.4107
AAUAAAAA	chr20:46157029-46157259(+)$1	230	60	68	21.4107
AAUAAAAG	chr2:201226406-201226662(+)$1	256	80	88	18.1964
aauaaaaa	chr15:57247679-57247944(+)$1	265	67	75	21.4107

#otherMatches

#Struct PSSM
dddmmmmd	chr18:43812803-43813078(+)$1	275	77	85	21.4107
fffff]cc	chr1:44929116-44929378(+)$1	262	46	54	18.1964
^^^^^^^^	chr13:98896551-98896778(+)$1	227	73	81	17.6607
::::::::	chr15:68354876-68355174(+)$1	298	78	86	21.4107
::::::::	chr3:60945945-60946170(-)$1	225	60	68	21.4107
ggggggoo	chr10:93591858-93592177(+)$1	319	69	77	18.8214
J:::::::	chr5:65451594-65451832(+)$1	238	46	54	18.2857
c[ffffff	chr20:34298427-34298714(-)$1	287	88	96	18.8214
hhhhhhh>	chr3:65858196-65858453(-)$1	257	79	87	18.8214
:::::::E	chr11:72826461-72826775(-)$1	314	81	89	18.1964
WWWWWWWW	chr20:62260013-62260260(+)$1	247	24	32	21.4107
::::IIII	chr8:30404950-30405251(+)$1	301	56	64	21.4107
^^^^^^^b	chr9:84248212-84248446(-)$1	234	40	48	18.1964
:::=====	chr11:92905210-92905499(-)$1	289	70	78	18.8214
!ffffff"	chr13:113367769-113368037(+)$1	268	58	66	21.4107
uuuuuuuu	chr12:11306893-11307157(-)$1	264	195	203	21.4107
!eeeee!!	chr5:95251006-95251273(-)$1	267	71	79	18.1964
cc"""fff	chr22:47506317-47506600(+)$1	283	57	65	17.6607
::::::gg	chr6:56988386-56988651(+)$1	265	74	82	21.4107
^^^^^^^^	chr17:6897942-6898170(-)$1	228	79	87	21.4107
zzzzzzzz	chr19:450099-450415(-)$1	316	76	84	21.4107
OOOOOOEE	chr2:111994366-111994638(-)$1	272	37	45	18.8214
yyyyyyyy	chr20:34292062-34292290(-)$1	228	23	31	21.4107
::::::::	chr14:21842327-21842610(-)$1	283	78	86	18.2857
JJJJJJ::	chr5:115507643-115507898(+)$1	255	26	34	21.4107
hhhfffff	chr2:54091861-54092094(-)$1	233	85	93	21.4107
::::::::	chr16:11889466-11889736(-)$1	270	58	66	21.4107
ddd]dddd	chr2:63173467-63173740(+)$1	273	79	87	18.1964
:::GGGGG	chr6:8081421-8081702(-)$1	281	49	57	21.4107
========	chr20:44708009-44708271(-)$1	262	17	25	21.4107
::::::::	chr12:66274175-66274471(+)$1	296	27	35	21.4107
ggggggff	chr20:46157059-46157316(+)$1	257	30	38	21.4107
eqqqqqqq	chr1:21501411-21501701(-)$1	290	71	79	18.1964
========	chr2:201313185-201313446(+)$1	261	50	58	18.8214
eerrrrrr	chr13:115047646-115047915(+)$1	269	78	86	18.1964
::::dddd	chr9:19376080-19376343(-)$1	263	69	77	18.1964
::::::::	chr2:20785785-20786103(-)$1	318	76	84	21.4107
ee]eeeee	chr6:35800645-35800910(-)$1	265	75	83	17.6607
fffffooo	chr3:136414615-136414871(-)$1	256	41	49	18.8214
::::::::	chr1:174532077-174532337(+)$1	260	61	69	21.4107
===:::::	chr17:74053095-74053415(-)$1	320	84	92	18.8214
PPPPPPPD	chr22:45133437-45133722(+)$1	285	104	112	18.2857
eee::::G	chr16:67918303-67918608(+)$1	305	92	100	18.8214
::::::ff	chr11:82869667-82869924(+)$1	257	234	242	18.2857
d333eeee	chr9:99255593-99255869(-)$1	276	67	75	21.4107
hhhhh]dd	chr20:18275325-18275615(+)$1	290	84	92	18.1964
::::::::	chr22:47492660-47492973(+)$1	313	63	71	21.4107
ggggyyyy	chr8:13037936-13038287(-)$1	351	96	104	17.6607
::::FFFF	chr17:76220713-76220992(+)$1	279	44	52	21.4107
gggggggp	chr22:42631349-42631617(-)$1	268	33	41	18.8214
::::::::	chr14:70453257-70453554(+)$1	297	77	85	21.4107
::::::::	chr1:94910689-94910975(+)$1	286	8	16	18.1964
::::::::	chr11:68146480-68146764(+)$1	284	42	50	21.4107
ggggggff	chr20:46157029-46157259(+)$1	230	60	68	21.4107
999999ee	chr2:201226406-201226662(+)$1	256	80	88	18.1964
::::::::	chr15:57247679-57247944(+)$1	265	67	75	21.4107

#DB
(((....)	chr18:43812803-43813078(+)$1	1	77	85	21.4107
))))).))	chr1:44929116-44929378(+)$1	1	46	54	18.1964
........	chr13:98896551-98896778(+)$1	1	73	81	17.6607
........	chr15:68354876-68355174(+)$1	1	78	86	21.4107
........	chr3:60945945-60946170(-)$1	1	60	68	21.4107
((((((..	chr10:93591858-93592177(+)$1	1	69	77	18.8214
(.......	chr5:65451594-65451832(+)$1	1	46	54	18.2857
(.((((((	chr20:34298427-34298714(-)$1	1	88	96	18.8214
))))))).	chr3:65858196-65858453(-)$1	1	79	87	18.8214
.......(	chr11:72826461-72826775(-)$1	1	81	89	18.1964
........	chr20:62260013-62260260(+)$1	1	24	32	21.4107
....((((	chr8:30404950-30405251(+)$1	1	56	64	21.4107
.......)	chr9:84248212-84248446(-)$1	1	40	48	18.1964
...(((((	chr11:92905210-92905499(-)$1	1	70	78	18.8214
.((((((.	chr13:113367769-113368037(+)$1	1	58	66	21.4107
........	chr12:11306893-11307157(-)$1	1	195	203	21.4107
.(((((..	chr5:95251006-95251273(-)$1	1	71	79	18.1964
((...(((	chr22:47506317-47506600(+)$1	1	57	65	17.6607
......((	chr6:56988386-56988651(+)$1	1	74	82	21.4107
........	chr17:6897942-6898170(-)$1	1	79	87	21.4107
........	chr19:450099-450415(-)$1	1	76	84	21.4107
......((	chr2:111994366-111994638(-)$1	1	37	45	18.8214
........	chr20:34292062-34292290(-)$1	1	23	31	21.4107
........	chr14:21842327-21842610(-)$1	1	78	86	18.2857
((((((..	chr5:115507643-115507898(+)$1	1	26	34	21.4107
)))(((((	chr2:54091861-54092094(-)$1	1	85	93	21.4107
........	chr16:11889466-11889736(-)$1	1	58	66	21.4107
))).))))	chr2:63173467-63173740(+)$1	1	79	87	18.1964
...(((((	chr6:8081421-8081702(-)$1	1	49	57	21.4107
((((((((	chr20:44708009-44708271(-)$1	1	17	25	21.4107
........	chr12:66274175-66274471(+)$1	1	27	35	21.4107
((((((((	chr20:46157059-46157316(+)$1	1	30	38	21.4107
(.......	chr1:21501411-21501701(-)$1	1	71	79	18.1964
))))))))	chr2:201313185-201313446(+)$1	1	50	58	18.8214
((......	chr13:115047646-115047915(+)$1	1	78	86	18.1964
....((((	chr9:19376080-19376343(-)$1	1	69	77	18.1964
........	chr2:20785785-20786103(-)$1	1	76	84	21.4107
)).)))))	chr6:35800645-35800910(-)$1	1	75	83	17.6607
(((((...	chr3:136414615-136414871(-)$1	1	41	49	18.8214
........	chr1:174532077-174532337(+)$1	1	61	69	21.4107
))).....	chr17:74053095-74053415(-)$1	1	84	92	18.8214
.......(	chr22:45133437-45133722(+)$1	1	104	112	18.2857
)))....(	chr16:67918303-67918608(+)$1	1	92	100	18.8214
......((	chr11:82869667-82869924(+)$1	1	234	242	18.2857
)...))))	chr9:99255593-99255869(-)$1	1	67	75	21.4107
))))).))	chr20:18275325-18275615(+)$1	1	84	92	18.1964
........	chr22:47492660-47492973(+)$1	1	63	71	21.4107
((((....	chr8:13037936-13038287(-)$1	1	96	104	17.6607
....((((	chr17:76220713-76220992(+)$1	1	44	52	21.4107
(((((((.	chr22:42631349-42631617(-)$1	1	33	41	18.8214
........	chr14:70453257-70453554(+)$1	1	77	85	21.4107
........	chr1:94910689-94910975(+)$1	1	8	16	18.1964
........	chr11:68146480-68146764(+)$1	1	42	50	21.4107
((((((((	chr20:46157029-46157259(+)$1	1	60	68	21.4107
......))	chr2:201226406-201226662(+)$1	1	80	88	18.1964
........	chr15:57247679-57247944(+)$1	1	67	75	21.4107

#PSSM
A : 0.53	a : 0.46	
A : 0.53	a : 0.46	
U : 0.53	u : 0.46	
A : 0.53	a : 0.46	
A : 0.53	a : 0.46	
A : 0.53	a : 0.46	
A : 0.42	a : 0.35	u : 0.07	U : 0.07	c : 0.01	g : 0.01	C : 0.01	G : 0.01	
a : 0.35	A : 0.33	U : 0.12	C : 0.05	u : 0.05	G : 0.03	c : 0.01	g : 0.01	

#score	1110.2500000000005
#seq	56
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_CDS_m1_run1.nuc.txt

#NT
GGGGCGGGGGCCG	chr12:12764948-12765223(+)$1	275	76	89	21.4444
gcggcgcuggcgg	chr4:3768317-3768581(+)$1	264	37	50	25.6666
GCGACGGGGGCGG	chr17:79894944-79895211(-)$1	267	19	32	24.5555
gcggcgggggcgg	chr2:231902446-231902696(+)$1	250	104	117	29.3333
gcggcggcggcag	chr8:91657853-91658141(-)$1	288	167	180	24.7777
GCGGAGGGAGCGG	chr4:17585074-17585307(+)$1	233	105	118	21.2222
GCAGCGGCGGCGG	chr19:48257939-48258209(+)$1	270	175	188	25.6666
GCGGAUGGGGCGG	chr19:49965807-49966109(+)$1	302	81	94	21.6666
GCGGCGGUGGCGG	chr16:9185817-9186052(+)$1	235	47	60	29.5555
guggcgguggcgg	chr19:12845308-12845570(-)$1	262	160	173	25.4444
GCGGCGGGGGCGC	chr20:61427828-61428069(+)$1	241	66	79	24.5555
GCGGCGCUGGCGG	chr18:51750703-51750979(-)$1	276	120	133	25.6666
gccgcggccgcgg	chr19:56599535-56599786(-)$1	251	2	15	21.1111
gcggcgggggagg	chr1:151584776-151585081(+)$1	305	1	14	25.2222
GCGGCGGUGGCGG	chr5:1344841-1345168(-)$1	327	82	95	29.5555
GCGGCGGUAGCUG	chr2:97481936-97482238(+)$1	302	84	97	21.1111
GCGGCGGCGGUGG	chr16:18573195-18573493(-)$1	298	7	20	24.8888
GCAGCGGCGGCGG	chr19:48257894-48258139(+)$1	245	220	233	25.6666
gcggcggcggcgg	chr12:118498748-118499037(-)$1	289	75	88	29.1111
GCGGCGGCGCCGG	chr4:3769195-3769449(+)$1	254	19	32	24.5555
gcggcggcggcgg	chr12:72148773-72149139(+)$1	366	149	162	29.1111
GCGGCGCUGGCGG	chr18:51750584-51750903(-)$1	319	44	57	25.6666
gcggcgggggcgg	chr2:231902503-231902756(+)$1	253	47	60	29.3333
ccggcgcgggcgg	chr14:35343663-35343971(-)$1	308	113	126	20.7777
GCGGAUGGGGCGG	chr19:49965727-49966007(+)$1	280	161	174	21.6666
GCUGGGGGGGCGG	chr2:27305621-27305898(+)$1	277	194	207	21.3333
gcggccggggccg	chr3:5229580-5229836(+)$1	256	223	236	21.3333
gcggcggcggcgg	chr16:31196338-31196571(+)$1	233	65	78	29.1111
GCAGCAGUGGCGG	chr9:6645333-6645600(-)$1	267	210	223	22.2222
GCUGCGGGGGCUG	chr7:100414755-100415031(-)$1	276	108	121	21.3333
GCGGAGCUGGGGG	chr22:42475628-42475894(+)$1	266	130	143	17.7777
gcggcggcggcgg	chr19:40030341-40030636(-)$1	295	202	215	29.1111
gcggcggcggcgg	chr19:40331199-40331473(-)$1	274	184	197	29.1111
ggggcggcgccgg	chr1:154530768-154531070(-)$1	302	104	117	20.8888
GGGGCCGUGGGGG	chr9:96323340-96323632(+)$1	292	128	141	18.1111
gcggcgguugcgg	chr1:11986166-11986453(-)$1	287	26	39	25.2222
UGGGCGGUGGGGG	chr1:156639458-156639773(-)$1	315	95	108	17.2222
GACGCGGUGGCGG	chr2:214149077-214149347(+)$1	270	229	242	21.6666
GCGGCUGGGGCGG	chr16:28962230-28962572(+)$1	342	169	182	25.5555
GCAGCGGCGGCGG	chr9:5832624-5832994(-)$1	370	94	107	25.6666
gcggccguggcgg	chr19:56127181-56127482(+)$1	301	77	90	25.7777
GCAGCAGUGGCGG	chr9:6645256-6645533(-)$1	277	143	156	22.2222
ggggcgguggagg	chr3:48699911-48700183(-)$1	272	84	97	21.7777
GCGGCGGGCGCGG	chr2:97482038-97482330(+)$1	292	102	115	25.1111

#otherMatches

#Struct PSSM
::ccc[ggggggg	chr6:1313139-1313414(+)$1	275	52	65	25.3333
cccEEEEEccc[d	chr12:12764948-12765223(+)$1	275	76	89	21.4444
BFFFFFF{FFFFF	chr4:3768317-3768581(+)$1	264	37	50	25.6666
fffGGGGGGG{HH	chr17:79894944-79895211(-)$1	267	19	32	24.5555
ccc[bb"""bb[b	chr2:231902446-231902696(+)$1	250	104	117	29.3333
d]bbddddfffff	chr8:91657853-91658141(-)$1	288	167	180	24.7777
[ammmma]eeeee	chr4:17585074-17585307(+)$1	233	105	118	21.2222
ccc[ccc[fffff	chr19:48257939-48258209(+)$1	270	175	188	25.6666
ff333ffffff]d	chr19:49965807-49966109(+)$1	302	81	94	21.6666
ff!!a[eeeeeoo	chr16:9185817-9186052(+)$1	235	47	60	29.5555
mmmmbb]a]eeee	chr19:12845308-12845570(-)$1	262	160	173	25.4444
[bb[a$$$$$a[c	chr20:61427828-61428069(+)$1	241	66	79	24.5555
=====ccceeeee	chr18:51750703-51750979(-)$1	276	120	133	25.6666
ffff[cccccc[b	chr19:56599535-56599786(-)$1	251	2	15	21.1111
EEEEEEEEEE{DD	chr1:151584776-151585081(+)$1	305	1	14	25.2222
ddpppppppdddd	chr5:1344841-1345168(-)$1	327	82	95	29.5555
a[eeeee[ccc[h	chr2:97481936-97482238(+)$1	302	84	97	21.1111
CCC{DDDDNNNNN	chr16:18573195-18573493(-)$1	298	7	20	24.8888
DYYDDDDddddqq	chr19:48257894-48258139(+)$1	245	220	233	25.6666
dd]adddd]bb22	chr12:118498748-118499037(-)$1	289	75	88	29.1111
cc]bb]dddd:BB	chr4:3769195-3769449(+)$1	254	19	32	24.5555
hhhhh]iiiiiii	chr12:72148773-72149139(+)$1	366	149	162	29.1111
=::ffffff[acc	chr18:51750584-51750903(-)$1	319	44	57	25.6666
dddeeeeeddddc	chr2:231902503-231902756(+)$1	253	47	60	29.3333
GGGGggggggg[c	chr14:35343663-35343971(-)$1	308	113	126	20.7777
ccHHHHHHHH}CC	chr19:49965727-49966007(+)$1	280	161	174	21.6666
ccc]a]a]cccFF	chr2:27305621-27305898(+)$1	277	194	207	21.3333
HHHHHHHHHHHHH	chr3:5229580-5229836(+)$1	256	223	236	21.3333
ee[bb[bb[bb[d	chr16:31196338-31196571(+)$1	233	65	78	29.1111
bb!!dddd[ffff	chr9:6645333-6645600(-)$1	267	210	223	22.2222
eeeee]ffffff4	chr7:100414755-100415031(-)$1	276	108	121	21.3333
dd[a!!eeeee[b	chr22:42475628-42475894(+)$1	266	130	143	17.7777
]a]bb]eeeee]c	chr19:40030341-40030636(-)$1	295	202	215	29.1111
bbmmmmbbJJJJJ	chr19:40331199-40331473(-)$1	274	184	197	29.1111
GGGGGG{AKKBBK	chr1:154530768-154531070(-)$1	302	104	117	20.8888
!!ddddnnnnndd	chr9:96323340-96323632(+)$1	292	128	141	18.1111
HHHHHHHHeeeee	chr1:11986166-11986453(-)$1	287	26	39	25.2222
!dddd!!ccclll	chr1:156639458-156639773(-)$1	315	95	108	17.2222
ii:::eeeee[cc	chr2:214149077-214149347(+)$1	270	229	242	21.6666
leeeee4444ggg	chr16:28962230-28962572(+)$1	342	169	182	25.5555
bb]eeeeeCCC{D	chr9:5832624-5832994(-)$1	370	94	107	25.6666
DDD{FFFFFF{CC	chr19:56127181-56127482(+)$1	301	77	90	25.7777
eeeeeccc[ffff	chr9:6645256-6645533(-)$1	277	143	156	22.2222
====[bb[eeeee	chr3:48699911-48700183(-)$1	272	84	97	21.7777
eeeeeeebb[iii	chr2:97482038-97482330(+)$1	292	102	115	25.1111

#DB
..(((.(((((((	chr6:1313139-1313414(+)$1	1	52	65	25.3333
)))((((((((.(	chr12:12764948-12765223(+)$1	1	76	89	21.4444
(((((((.(((((	chr4:3768317-3768581(+)$1	1	37	50	25.6666
)))(((((((.((	chr17:79894944-79895211(-)$1	1	19	32	24.5555
(((.((...((.(	chr2:231902446-231902696(+)$1	1	104	117	29.3333
).))))))(((((	chr8:91657853-91658141(-)$1	1	167	180	24.7777
.(....).)))))	chr4:17585074-17585307(+)$1	1	105	118	21.2222
(((.(((.(((((	chr19:48257939-48258209(+)$1	1	175	188	25.6666
))...)))))).)	chr19:49965807-49966109(+)$1	1	81	94	21.6666
((..(.(((((..	chr16:9185817-9186052(+)$1	1	47	60	29.5555
....)).).))))	chr19:12845308-12845570(-)$1	1	160	173	25.4444
.((.(.....(.(	chr20:61427828-61428069(+)$1	1	66	79	24.5555
)))))((((((((	chr18:51750703-51750979(-)$1	1	120	133	25.6666
((((.((((((.(	chr19:56599535-56599786(-)$1	1	2	15	21.1111
((((((((((.((	chr1:151584776-151585081(+)$1	1	1	14	25.2222
((.......))))	chr5:1344841-1345168(-)$1	1	82	95	29.5555
(.(((((.(((.(	chr2:97481936-97482238(+)$1	1	84	97	21.1111
(((.((((.....	chr16:18573195-18573493(-)$1	1	7	20	24.8888
)..))))((((..	chr19:48257894-48258139(+)$1	1	220	233	25.6666
)).))))).))..	chr12:118498748-118499037(-)$1	1	75	88	29.1111
)).)).)))).((	chr4:3769195-3769449(+)$1	1	19	32	24.5555
))))).)))))))	chr12:72148773-72149139(+)$1	1	149	162	29.1111
)..((((((.(((	chr18:51750584-51750903(-)$1	1	44	57	25.6666
(((((((((((((	chr2:231902503-231902756(+)$1	1	47	60	29.3333
))))(((((((.(	chr14:35343663-35343971(-)$1	1	113	126	20.7777
)))))))))).))	chr19:49965727-49966007(+)$1	1	161	174	21.6666
))).).).)))))	chr2:27305621-27305898(+)$1	1	194	207	21.3333
)))))))))))))	chr3:5229580-5229836(+)$1	1	223	236	21.3333
((.((.((.((.(	chr16:31196338-31196571(+)$1	1	65	78	29.1111
((..((((.((((	chr9:6645333-6645600(-)$1	1	210	223	22.2222
))))).)))))).	chr7:100414755-100415031(-)$1	1	108	121	21.3333
((.(..(((((.(	chr22:42475628-42475894(+)$1	1	130	143	17.7777
.).)).))))).)	chr19:40030341-40030636(-)$1	1	202	215	29.1111
((....)))))))	chr19:40331199-40331473(-)$1	1	184	197	29.1111
((((((.(..((.	chr1:154530768-154531070(-)$1	1	104	117	20.8888
..((((.....))	chr9:96323340-96323632(+)$1	1	128	141	18.1111
(((((((((((((	chr1:11986166-11986453(-)$1	1	26	39	25.2222
.((((..(((...	chr1:156639458-156639773(-)$1	1	95	108	17.2222
))...(((((.((	chr2:214149077-214149347(+)$1	1	229	242	21.6666
.)))))....)))	chr16:28962230-28962572(+)$1	1	169	182	25.5555
)).)))))(((.(	chr9:5832624-5832994(-)$1	1	94	107	25.6666
(((.((((((.((	chr19:56127181-56127482(+)$1	1	77	90	25.7777
)))))(((.((((	chr9:6645256-6645533(-)$1	1	143	156	22.2222
((((.((.(((((	chr3:48699911-48700183(-)$1	1	84	97	21.7777
(((((((((.(((	chr2:97482038-97482330(+)$1	1	102	115	25.1111

#PSSM
G : 0.55	g : 0.39	c : 0.02	U : 0.02	
C : 0.48	c : 0.35	G : 0.06	g : 0.04	u : 0.02	A : 0.02	
g : 0.39	G : 0.39	A : 0.11	U : 0.04	c : 0.02	C : 0.02	
G : 0.55	g : 0.42	A : 0.02	
C : 0.46	c : 0.39	A : 0.08	u : 0.02	G : 0.02	
G : 0.44	g : 0.37	U : 0.06	c : 0.04	A : 0.04	C : 0.02	
G : 0.51	g : 0.37	C : 0.06	c : 0.04	
U : 0.24	G : 0.22	c : 0.17	u : 0.13	g : 0.11	C : 0.11	
G : 0.51	g : 0.37	A : 0.04	c : 0.02	u : 0.02	C : 0.02	
G : 0.55	g : 0.39	C : 0.02	c : 0.02	
C : 0.48	c : 0.37	G : 0.06	a : 0.04	U : 0.02	
G : 0.51	g : 0.37	U : 0.04	C : 0.02	a : 0.02	c : 0.02	
G : 0.55	g : 0.42	C : 0.02	

#score	1093.222222222222
#seq	45
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_CDS_m2_run1.nuc.txt

#NT
CAGAGGCUAAAGUC	chr6:74227868-74228084(-)$1	216	38	52	29.0588
CAGAGGCUUAAGGA	chr19:13054536-13054787(+)$1	251	29	43	19.0588
CAGAGGCUAAAGUC	chr6:74227979-74228183(-)$1	204	137	151	29.0588
CAGAGGCCCACCUC	chr12:56705047-56705257(-)$1	210	75	89	22.0000
CAGAGGCCCACCUC	chr12:56705018-56705243(-)$1	225	61	75	22.0000
CAGAGGUCACAAUC	chr9:19378798-19379017(-)$1	219	26	40	17.8823
CAGGGGCCACUGAC	chr11:65402439-65402685(+)$1	246	211	225	15.5294
CAGAGGCUAAAGUC	chr6:74227976-74228179(-)$1	203	133	147	29.0588
CAGAUGCUCAAGUC	chr2:132249348-132249550(-)$1	202	2	16	26.4117
CAGUGACCCAUGAC	chr7:103151285-103151513(-)$1	228	166	180	15.2352
CAGAUGCUCAAGUC	chr2:130940203-130940441(+)$1	238	45	59	26.4117
CAGAUGCUCAAGUC	chr2:132249350-132249616(-)$1	266	68	82	26.4117
CAGAGGCUAAAGUC	chr6:74227884-74228088(-)$1	204	42	56	29.0588
CAGAGGUCACAAUC	chr9:19378781-19378998(-)$1	217	7	21	17.8823
CAGAUGCUCAAGUC	chr2:130940241-130940449(+)$1	208	7	21	26.4117
CAGUGACCCAUGAC	chr7:103151313-103151526(-)$1	213	179	193	15.2352

#otherMatches

#Struct PSSM
EEEE}BBggggggg	chr6:74227985-74228200(-)$1	215	154	168	29.0588
ddd:CCCggggggg	chr6:74227868-74228084(-)$1	216	38	52	29.0588
OOOOEEEEEKKBBE	chr19:13054536-13054787(+)$1	251	29	43	19.0588
ccgggggggeeeee	chr6:74227979-74228183(-)$1	204	137	151	29.0588
e:::EEEEE:dddd	chr12:56705047-56705257(-)$1	210	75	89	22.0000
e:::EEEEE:dddd	chr12:56705018-56705243(-)$1	225	61	75	22.0000
::::bbeeeeehhh	chr9:19378798-19379017(-)$1	219	26	40	17.8823
ggggggpppppppg	chr11:65402439-65402685(+)$1	246	211	225	15.5294
ccgggggggeeeee	chr6:74227976-74228179(-)$1	203	133	147	29.0588
bb[cccqqqqqqqq	chr2:132249348-132249550(-)$1	202	2	16	26.4117
qqqqqqqqdddd66	chr7:103151285-103151513(-)$1	228	166	180	15.2352
CCLLLDDDD:::::	chr2:130940203-130940441(+)$1	238	45	59	26.4117
lddddbb[bbqqqq	chr2:132249350-132249616(-)$1	266	68	82	26.4117
ffff!!hhhhhhhh	chr6:74227884-74228088(-)$1	204	42	56	29.0588
::::bbeeeeehhh	chr9:19378781-19378998(-)$1	217	7	21	17.8823
leeeee:::::CCC	chr2:130940241-130940449(+)$1	208	7	21	26.4117
qqqqqqqqdddddd	chr7:103151313-103151526(-)$1	213	179	193	15.2352

#DB
)))).))(((((((	chr6:74227985-74228200(-)$1	1	154	168	29.0588
))).((((((((((	chr6:74227868-74228084(-)$1	1	38	52	29.0588
....(((((..(((	chr19:13054536-13054787(+)$1	1	29	43	19.0588
)))))))))(((((	chr6:74227979-74228183(-)$1	1	137	151	29.0588
)...(((((.((((	chr12:56705047-56705257(-)$1	1	75	89	22.0000
)...(((((.((((	chr12:56705018-56705243(-)$1	1	61	75	22.0000
....((((((((((	chr9:19378798-19379017(-)$1	1	26	40	17.8823
((((((.......)	chr11:65402439-65402685(+)$1	1	211	225	15.5294
)))))))))(((((	chr6:74227976-74228179(-)$1	1	133	147	29.0588
((.(((........	chr2:132249348-132249550(-)$1	1	2	16	26.4117
........))))..	chr7:103151285-103151513(-)$1	1	166	180	15.2352
((...((((.....	chr2:130940203-130940441(+)$1	1	45	59	26.4117
.))))((.((....	chr2:132249350-132249616(-)$1	1	68	82	26.4117
((((..((((((((	chr6:74227884-74228088(-)$1	1	42	56	29.0588
....((((((((((	chr9:19378781-19378998(-)$1	1	7	21	17.8823
.))))).....(((	chr2:130940241-130940449(+)$1	1	7	21	26.4117
........))))))	chr7:103151313-103151526(-)$1	1	179	193	15.2352

#PSSM
C : 1.00	
A : 1.00	
G : 1.00	
A : 0.82	U : 0.11	G : 0.05	
G : 0.76	U : 0.23	
G : 0.88	A : 0.11	
C : 0.88	U : 0.11	
U : 0.58	C : 0.41	
A : 0.47	C : 0.47	U : 0.05	
A : 0.82	C : 0.17	
A : 0.70	U : 0.17	C : 0.11	
G : 0.76	C : 0.11	A : 0.11	
U : 0.76	A : 0.17	G : 0.05	
C : 0.94	A : 0.05	

#score	395.7647058823531
#seq	17
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF844VZT_HNRNPU_transcript_m2_run2.nuc.txt

#NT
GGGAGGA	chr16:27492680-27492951(-)$1	271	94	101	13.7272
AGGAGGG	chr3:48642303-48642584(-)$1	281	50	57	13.8030
GGGAGAG	chr19:34874365-34874606(+)$1	241	197	204	13.5757
UGGAGGG	chr4:10108936-10109214(-)$1	278	107	114	14.0303
gggaggg	chr19:40969276-40969543(-)$1	267	36	43	17.6666
GGGAGGC	chr6:52227054-52227332(+)$1	278	7	14	13.8787
gggaggg	chr1:246226685-246226978(-)$1	293	33	40	17.6666
gggaggu	chr12:93773536-93773801(+)$1	265	246	253	13.7272
GGGAGGG	chr6:52227534-52227844(+)$1	310	4	11	17.6666
gggagga	chr19:46700866-46701085(-)$1	219	37	44	13.7272
UGGAGGG	chr19:5647739-5647997(+)$1	258	91	98	14.0303
gggaugg	chr10:35694148-35694418(+)$1	270	28	35	13.8030
GGUAGGG	chr20:31159564-31159845(-)$1	281	74	81	13.1969
GGGAGGG	chr11:65192556-65192790(+)$1	234	225	232	17.6666
gggaugg	chr8:11665544-11665812(+)$1	268	15	22	13.8030
GGGAGGG	chr9:117134114-117134386(-)$1	272	98	105	17.6666
GGGAGGU	chr2:236476564-236476848(+)$1	284	96	103	13.7272
GGGAGGC	chr7:100027469-100027794(+)$1	325	25	32	13.8787
GGGAGGG	chr2:170684725-170685006(+)$1	281	246	253	17.6666
UGGAGGG	chr4:10108870-10109136(-)$1	266	29	36	14.0303
GGGAGGU	chr2:99230814-99231101(+)$1	287	206	213	13.7272
GGGAUGG	chr16:81580656-81580968(+)$1	312	33	40	13.8030
gggagag	chr1:54837668-54837965(-)$1	297	265	272	13.5757
AGGAGGG	chr1:44465393-44465686(-)$1	293	42	49	13.8030
GGGAGGG	chr19:41770838-41771107(+)$1	269	70	77	17.6666
GGGAGGG	chr8:130493716-130493996(-)$1	280	98	105	17.6666
GGGAGGG	chr3:9438739-9439025(-)$1	286	49	56	17.6666
UGGAGGG	chr10:126787783-126788061(-)$1	278	96	103	14.0303
AGGAGGG	chr21:45727923-45728227(+)$1	304	65	72	13.8030
gggagag	chr6:53199858-53200134(-)$1	276	152	159	13.5757
GGGAGGG	chr11:991679-991953(+)$1	274	96	103	17.6666
GGGAGGG	chr14:73924306-73924596(-)$1	290	48	55	17.6666
GGGAGAG	chr11:2707047-2707266(-)$1	219	98	105	13.5757
gggagag	chr7:155505677-155505937(+)$1	260	31	38	13.5757
gggaagg	chr21:45478205-45478477(+)$1	272	71	78	13.8030
GGCAGGG	chr17:80420693-80420954(+)$1	261	15	22	13.4999
GGGAGGG	chr12:121684599-121684942(-)$1	343	61	68	17.6666
GGGAGGG	chr17:79544178-79544462(-)$1	284	105	112	17.6666
gggaagg	chr9:101554383-101554690(-)$1	307	251	258	13.8030
GGGAAGG	chr19:39331336-39331642(-)$1	306	240	247	13.8030
GGGAGAG	chr11:992110-992382(+)$1	272	111	118	13.5757
GGGAUGG	chr22:19840541-19840802(-)$1	261	75	82	13.8030
GGCAGGG	chr22:42275493-42275740(+)$1	247	50	57	13.4999
UGGAGGG	chr7:5636512-5636785(+)$1	273	120	127	14.0303
GGGAGGG	chr15:66909153-66909435(+)$1	282	29	36	17.6666
GGGAGGG	chr8:41526179-41526500(-)$1	321	169	176	17.6666
GGGAGGC	chr10:126790280-126790562(-)$1	282	2	9	13.8787
gggaagg	chr21:45478018-45478318(+)$1	300	258	265	13.8030
GGGAGGC	chr22:19493466-19493737(+)$1	271	57	64	13.8787
GGGAGGG	chr3:47010484-47010756(-)$1	272	32	39	17.6666
GGGAAGG	chr6:39194702-39194984(-)$1	282	3	10	13.8030
GGCAGGG	chr11:2714340-2714595(-)$1	255	34	41	13.4999
GGGAUGG	chr9:123154846-123155163(-)$1	317	76	83	13.8030
GGGAGGG	chr3:14467116-14467386(+)$1	270	109	116	17.6666
GGGAGGA	chr17:79544536-79544801(-)$1	265	63	70	13.7272
UGGAGGG	chr1:46767009-46767283(-)$1	274	5	12	14.0303
GGCAGGG	chr8:1733821-1734098(+)$1	277	208	215	13.4999
gggaggg	chr10:72514369-72514624(+)$1	255	18	25	17.6666
GGGAGGG	chr2:61764202-61764427(-)$1	225	33	40	17.6666
gggaggg	chr19:4457099-4457379(-)$1	280	22	29	17.6666
GGCAGGG	chr2:131968000-131968241(+)$1	241	147	154	13.4999
GGGAGGG	chr12:109124206-109124496(-)$1	290	23	30	17.6666
aggaggg	chr9:117152378-117152658(-)$1	280	10	17	13.8030
GGGAGGG	chr19:4456051-4456299(-)$1	248	7	14	17.6666
GGGAGGC	chr6:52226995-52227254(+)$1	259	66	73	13.8787

#otherMatches

#Struct PSSM
ffff[ff	chrX:41194443-41194687(+)$1	244	55	62	14.0303
[bb!!dd	chr16:27492680-27492951(-)$1	271	94	101	13.7272
{CCC{DD	chr3:48642303-48642584(-)$1	281	50	57	13.8030
]aJJJJJ	chr19:34874365-34874606(+)$1	241	197	204	13.5757
d]bb]a2	chr4:10108936-10109214(-)$1	278	107	114	14.0303
:::::::	chr19:40969276-40969543(-)$1	267	36	43	17.6666
ennnnne	chr6:52227054-52227332(+)$1	278	7	14	13.8787
:::::::	chr1:246226685-246226978(-)$1	293	33	40	17.6666
dddd333	chr12:93773536-93773801(+)$1	265	246	253	13.7272
LLLHHHH	chr6:52227534-52227844(+)$1	310	4	11	17.6666
ffffDDD	chr19:46700866-46701085(-)$1	219	37	44	13.7272
:::dddd	chr19:5647739-5647997(+)$1	258	91	98	14.0303
!!ddddr	chr10:35694148-35694418(+)$1	270	28	35	13.8030
dd!!ccc	chr20:31159564-31159845(-)$1	281	74	81	13.1969
b]ddddC	chr11:65192556-65192790(+)$1	234	225	232	17.6666
[bb[a[b	chr8:11665544-11665812(+)$1	268	15	22	13.8030
MDDDD:g	chr9:117134114-117134386(-)$1	272	98	105	17.6666
lldddd:	chr2:236476564-236476848(+)$1	284	96	103	13.7272
oocccee	chr7:100027469-100027794(+)$1	325	25	32	13.8787
\\\\\\\	chr2:170684725-170685006(+)$1	281	246	253	17.6666
dd:CCCK	chr4:10108870-10109136(-)$1	266	29	36	14.0303
CCKKEEE	chr2:99230814-99231101(+)$1	287	206	213	13.7272
GG{FFFF	chr16:81580656-81580968(+)$1	312	33	40	13.8030
vvvvv==	chr1:54837668-54837965(-)$1	297	265	272	13.5757
=======	chr1:44465393-44465686(-)$1	293	42	49	13.8030
ga22ccc	chr19:41770838-41771107(+)$1	269	70	77	17.6666
!ffffff	chr8:130493716-130493996(-)$1	280	98	105	17.6666
4444hhh	chr3:9438739-9439025(-)$1	286	49	56	17.6666
oiiiiii	chr10:126787783-126788061(-)$1	278	96	103	14.0303
FFFFKKF	chr21:45727923-45728227(+)$1	304	65	72	13.8030
EEE}GGG	chr6:53199858-53200134(-)$1	276	152	159	13.5757
dddd[a[	chr11:991679-991953(+)$1	274	96	103	17.6666
dd"""a!	chr14:73924306-73924596(-)$1	290	48	55	17.6666
eee[ddd	chr11:2707047-2707266(-)$1	219	98	105	13.5757
DDLLLFF	chr7:155505677-155505937(+)$1	260	31	38	13.5757
c[dddd!	chr21:45478205-45478477(+)$1	272	71	78	13.8030
DDDDLLL	chr17:80420693-80420954(+)$1	261	15	22	13.4999
e!!bb[f	chr12:121684599-121684942(-)$1	343	61	68	17.6666
%%%%%cc	chr17:79544178-79544462(-)$1	284	105	112	17.6666
::::a[b	chr9:101554383-101554690(-)$1	307	251	258	13.8030
a]fffff	chr19:39331336-39331642(-)$1	306	240	247	13.8030
bb[hhhh	chr11:992110-992382(+)$1	272	111	118	13.5757
:::::::	chr22:19840541-19840802(-)$1	261	75	82	13.8030
GGGGGGG	chr22:42275493-42275740(+)$1	247	50	57	13.4999
c####cc	chr7:5636512-5636785(+)$1	273	120	127	14.0303
FFFFF::	chr15:66909153-66909435(+)$1	282	29	36	17.6666
eee[ccc	chr8:41526179-41526500(-)$1	321	169	176	17.6666
:::::::	chr10:126790280-126790562(-)$1	282	2	9	13.8787
]a4444a	chr21:45478018-45478318(+)$1	300	258	265	13.8030
nnnnnee	chr22:19493466-19493737(+)$1	271	57	64	13.8787
=:::ccc	chr3:47010484-47010756(-)$1	272	32	39	17.6666
EEE:::c	chr6:39194702-39194984(-)$1	282	3	10	13.8030
uuuuuuu	chr11:2714340-2714595(-)$1	255	34	41	13.4999
uuu====	chr9:123154846-123155163(-)$1	317	76	83	13.8030
&&&&&&&	chr3:14467116-14467386(+)$1	270	109	116	17.6666
cc]addd	chr17:79544536-79544801(-)$1	265	63	70	13.7272
CKKDDDD	chr1:46767009-46767283(-)$1	274	5	12	14.0303
iiiiiii	chr8:1733821-1734098(+)$1	277	208	215	13.4999
[a[bbrr	chr10:72514369-72514624(+)$1	255	18	25	17.6666
:CCC{A:	chr2:61764202-61764427(-)$1	225	33	40	17.6666
bbqqqqq	chr19:4457099-4457379(-)$1	280	22	29	17.6666
ccc333b	chr2:131968000-131968241(+)$1	241	147	154	13.4999
LFFFFFF	chr12:109124206-109124496(-)$1	290	23	30	17.6666
!dddd[c	chr9:117152378-117152658(-)$1	280	10	17	13.8030
::::bb$	chr19:4456051-4456299(-)$1	248	7	14	17.6666
ennnnne	chr6:52226995-52227254(+)$1	259	66	73	13.8787

#DB
((((.((	chrX:41194443-41194687(+)$1	1	55	62	14.0303
.((..((	chr16:27492680-27492951(-)$1	1	94	101	13.7272
.(((.((	chr3:48642303-48642584(-)$1	1	50	57	13.8030
.))))))	chr19:34874365-34874606(+)$1	1	197	204	13.5757
).)).).	chr4:10108936-10109214(-)$1	1	107	114	14.0303
.......	chr19:40969276-40969543(-)$1	1	36	43	17.6666
(.....)	chr6:52227054-52227332(+)$1	1	7	14	13.8787
.......	chr1:246226685-246226978(-)$1	1	33	40	17.6666
))))...	chr12:93773536-93773801(+)$1	1	246	253	13.7272
...((((	chr6:52227534-52227844(+)$1	1	4	11	17.6666
))))(((	chr19:46700866-46701085(-)$1	1	37	44	13.7272
...((((	chr19:5647739-5647997(+)$1	1	91	98	14.0303
..((((.	chr10:35694148-35694418(+)$1	1	28	35	13.8030
((..(((	chr20:31159564-31159845(-)$1	1	74	81	13.1969
).)))))	chr11:65192556-65192790(+)$1	1	225	232	17.6666
.((.(.(	chr8:11665544-11665812(+)$1	1	15	22	13.8030
.((((.(	chr9:117134114-117134386(-)$1	1	98	105	17.6666
..)))).	chr2:236476564-236476848(+)$1	1	96	103	13.7272
..)))))	chr7:100027469-100027794(+)$1	1	25	32	13.8787
.......	chr2:170684725-170685006(+)$1	1	246	253	17.6666
)).(((.	chr4:10108870-10109136(-)$1	1	29	36	14.0303
((..(((	chr2:99230814-99231101(+)$1	1	206	213	13.7272
((.((((	chr16:81580656-81580968(+)$1	1	33	40	13.8030
.....))	chr1:54837668-54837965(-)$1	1	265	272	13.5757
(((((((	chr1:44465393-44465686(-)$1	1	42	49	13.8030
))..)))	chr19:41770838-41771107(+)$1	1	70	77	17.6666
.((((((	chr8:130493716-130493996(-)$1	1	98	105	17.6666
....)))	chr3:9438739-9439025(-)$1	1	49	56	17.6666
.))))))	chr10:126787783-126788061(-)$1	1	96	103	14.0303
((((..(	chr21:45727923-45728227(+)$1	1	65	72	13.8030
))).)))	chr6:53199858-53200134(-)$1	1	152	159	13.5757
((((.(.	chr11:991679-991953(+)$1	1	96	103	17.6666
((...(.	chr14:73924306-73924596(-)$1	1	48	55	17.6666
(((.(((	chr11:2707047-2707266(-)$1	1	98	105	13.5757
((...((	chr7:155505677-155505937(+)$1	1	31	38	13.5757
(.((((.	chr21:45478205-45478477(+)$1	1	71	78	13.8030
((((...	chr17:80420693-80420954(+)$1	1	15	22	13.4999
(..((.(	chr12:121684599-121684942(-)$1	1	61	68	17.6666
.....((	chr17:79544178-79544462(-)$1	1	105	112	17.6666
....(.(	chr9:101554383-101554690(-)$1	1	251	258	13.8030
).)))))	chr19:39331336-39331642(-)$1	1	240	247	13.8030
((.((((	chr11:992110-992382(+)$1	1	111	118	13.5757
.......	chr22:19840541-19840802(-)$1	1	75	82	13.8030
(((((((	chr22:42275493-42275740(+)$1	1	50	57	13.4999
(....((	chr7:5636512-5636785(+)$1	1	120	127	14.0303
(((((..	chr15:66909153-66909435(+)$1	1	29	36	17.6666
(((.(((	chr8:41526179-41526500(-)$1	1	169	176	17.6666
.......	chr10:126790280-126790562(-)$1	1	2	9	13.8787
.)....)	chr21:45478018-45478318(+)$1	1	258	265	13.8030
.....))	chr22:19493466-19493737(+)$1	1	57	64	13.8787
)...(((	chr3:47010484-47010756(-)$1	1	32	39	17.6666
(((...(	chr6:39194702-39194984(-)$1	1	3	10	13.8030
.......	chr11:2714340-2714595(-)$1	1	34	41	13.4999
...))))	chr9:123154846-123155163(-)$1	1	76	83	13.8030
.......	chr3:14467116-14467386(+)$1	1	109	116	17.6666
)).)(((	chr17:79544536-79544801(-)$1	1	63	70	13.7272
(..((((	chr1:46767009-46767283(-)$1	1	5	12	14.0303
)))))))	chr8:1733821-1734098(+)$1	1	208	215	13.4999
.(.((..	chr10:72514369-72514624(+)$1	1	18	25	17.6666
.(((.(.	chr2:61764202-61764427(-)$1	1	33	40	17.6666
((.....	chr19:4457099-4457379(-)$1	1	22	29	17.6666
)))...)	chr2:131968000-131968241(+)$1	1	147	154	13.4999
.((((((	chr12:109124206-109124496(-)$1	1	23	30	17.6666
.((((.(	chr9:117152378-117152658(-)$1	1	10	17	13.8030
....((.	chr19:4456051-4456299(-)$1	1	7	14	17.6666
(.....)	chr6:52226995-52227254(+)$1	1	66	73	13.8787

#PSSM
G : 0.62	g : 0.21	U : 0.10	A : 0.04	a : 0.01	
G : 0.77	g : 0.22	
G : 0.68	g : 0.22	C : 0.07	U : 0.01	
A : 0.77	a : 0.22	
G : 0.69	g : 0.15	U : 0.04	a : 0.04	u : 0.03	A : 0.03	
G : 0.72	g : 0.18	A : 0.04	a : 0.04	
G : 0.63	g : 0.19	C : 0.07	A : 0.03	U : 0.03	u : 0.01	a : 0.01	

#score	994.0303030303016
#seq	66
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_CDS_m2_run2.nuc.txt

#NT
UUUUU	chr11:63525718-63525973(+)$1	255	69	74	15.0000
UUUUU	chr8:71506640-71506868(-)$1	228	56	61	15.0000
UUUUU	chr11:18428736-18428972(+)$1	236	165	170	15.0000
UUUUU	chr3:194149486-194149747(-)$1	261	80	85	15.0000
UUUUU	chr11:5363689-5363941(-)$1	252	97	102	15.0000
UUUUU	chr19:6441146-6441511(-)$1	365	276	281	15.0000
UUUUU	chr2:136437642-136437911(+)$1	269	68	73	15.0000
UUUUU	chr11:114273461-114273716(+)$1	255	3	8	15.0000
UUUUU	chr7:138239342-138239633(+)$1	291	89	94	15.0000
UUUUU	chr16:47195558-47195842(-)$1	284	20	25	15.0000
UUUUU	chr1:47746689-47746944(-)$1	255	33	38	15.0000
UUUUU	chr11:61133415-61133778(+)$1	363	83	88	15.0000
UUUUU	chr9:127174556-127174819(-)$1	263	40	45	15.0000
UUUUU	chr4:100869867-100870143(-)$1	276	222	227	15.0000
UUUUU	chr12:53865377-53865617(+)$1	240	25	30	15.0000
UUUUU	chr1:111494903-111495156(-)$1	253	31	36	15.0000
UUUUU	chr2:61577612-61577846(-)$1	234	167	172	15.0000
UUUUU	chr1:23395453-23395692(+)$1	239	29	34	15.0000
UUUUU	chr17:1257513-1257741(-)$1	228	68	73	15.0000
UUUUU	chr11:5322375-5322638(-)$1	263	74	79	15.0000
uuuuu	chr17:57721600-57721858(+)$1	258	26	31	15.0000
UUUUU	chr11:5322479-5322735(-)$1	256	171	176	15.0000
UUUUU	chr12:53859618-53859841(+)$1	223	30	35	15.0000
UUUUU	chr8:101724489-101724706(-)$1	217	14	19	15.0000
UUUUU	chr16:58612540-58612790(-)$1	250	213	218	15.0000
UUUUU	chr3:33171333-33171591(+)$1	258	16	21	15.0000
UUUUU	chr11:3789741-3790013(-)$1	272	239	244	15.0000
UUUUU	chr1:205683414-205683714(-)$1	300	49	54	15.0000
UUUUU	chr18:12720418-12720646(+)$1	228	57	62	15.0000
UUUUU	chr2:44126527-44126845(-)$1	318	71	76	15.0000
UUUUU	chr3:196509396-196509684(+)$1	288	40	45	15.0000
UUUUU	chr2:171910221-171910464(-)$1	243	87	92	15.0000
UUUUU	chr12:53856165-53856374(+)$1	209	12	17	15.0000
UUUUU	chr1:87538598-87538957(+)$1	359	5	10	15.0000
UUUUU	chr3:156261999-156262242(-)$1	243	170	175	15.0000
UUUUU	chr3:52028960-52029169(-)$1	209	31	36	15.0000
UUUUU	chr12:53854758-53854995(+)$1	237	26	31	15.0000
UUUUU	chr10:76980407-76980642(+)$1	235	58	63	15.0000
Uuuuu	chr12:53858443-53858646(+)$1	203	20	25	15.0000
UUUUU	chr8:71499037-71499278(-)$1	241	21	26	15.0000
UUUUU	chr17:65082876-65083168(-)$1	292	285	290	15.0000
UUUUU	chr1:224599118-224599368(-)$1	250	39	44	15.0000
UUUUU	chr8:71499306-71499512(-)$1	206	90	95	15.0000
UUUUU	chr2:228416711-228416933(+)$1	222	102	107	15.0000
UUUUU	chr5:56546688-56547023(+)$1	335	29	34	15.0000
UUUUU	chr8:101725283-101725509(-)$1	226	10	15	15.0000
UUUUU	chr16:68156141-68156362(+)$1	221	62	67	15.0000
UUUUU	chr8:101719020-101719253(-)$1	233	212	217	15.0000
UUUUU	chrX:53621368-53621673(-)$1	305	75	80	15.0000
UUUUU	chr17:57762338-57762593(+)$1	255	64	69	15.0000
UUUUU	chr10:28900638-28900915(+)$1	277	11	16	15.0000
UUUUU	chr16:3843414-3843728(-)$1	314	76	81	15.0000
UUUUU	chr4:83748594-83748875(-)$1	281	45	50	15.0000
UUUUU	chr8:101718918-101719126(-)$1	208	85	90	15.0000
uuuuu	chr6:31807223-31807484(+)$1	261	42	47	15.0000
UUUUU	chr1:54507292-54507580(-)$1	288	259	264	15.0000
UUUUU	chr14:102446025-102446315(+)$1	290	23	28	15.0000
UUUUU	chr16:28845315-28845579(+)$1	264	61	66	15.0000
UUUUU	chr2:32445506-32445832(+)$1	326	290	295	15.0000
UUUUU	chr18:23632525-23632866(-)$1	341	44	49	15.0000
UUUUU	chr7:135612434-135612728(-)$1	294	21	26	15.0000
UUUUU	chr4:122738677-122738940(-)$1	263	2	7	15.0000
UUUUU	chr2:54147936-54148251(-)$1	315	266	271	15.0000
UUUUU	chr4:122739852-122740128(-)$1	276	47	52	15.0000
UUUUU	chr16:68156558-68156821(+)$1	263	201	206	15.0000
uuuuu	chr9:114994278-114994508(-)$1	230	185	190	15.0000
UUUUU	chr12:57106194-57106436(-)$1	242	130	135	15.0000
UUUUU	chr4:119738318-119738601(-)$1	283	231	236	15.0000
UUUUU	chr16:1370338-1370559(+)$1	221	82	87	15.0000
UUUUU	chr7:104752814-104753091(+)$1	277	212	217	15.0000
UUUUU	chr10:27425181-27425415(-)$1	234	46	51	15.0000
UUUUU	chr5:134023774-134024082(+)$1	308	89	94	15.0000

#otherMatches

#Struct PSSM
dddd]	chr1:41536173-41536456(-)$1	283	39	44	15.0000
dd888	chr11:63525718-63525973(+)$1	255	69	74	15.0000
:::::	chr8:71506640-71506868(-)$1	228	56	61	15.0000
d[ggg	chr11:18428736-18428972(+)$1	236	165	170	15.0000
eeee:	chr3:194149486-194149747(-)$1	261	80	85	15.0000
^^^^^	chr11:5363689-5363941(-)$1	252	97	102	15.0000
:::::	chr19:6441146-6441511(-)$1	365	276	281	15.0000
f&&&&	chr2:136437642-136437911(+)$1	269	68	73	15.0000
DMMMM	chr11:114273461-114273716(+)$1	255	3	8	15.0000
:::::	chr7:138239342-138239633(+)$1	291	89	94	15.0000
mmmmb	chr16:47195558-47195842(-)$1	284	20	25	15.0000
mgggg	chr1:47746689-47746944(-)$1	255	33	38	15.0000
:::::	chr11:61133415-61133778(+)$1	363	83	88	15.0000
lllhh	chr9:127174556-127174819(-)$1	263	40	45	15.0000
=====	chr4:100869867-100870143(-)$1	276	222	227	15.0000
cc!!b	chr12:53865377-53865617(+)$1	240	25	30	15.0000
:eeee	chr1:111494903-111495156(-)$1	253	31	36	15.0000
:::::	chr2:61577612-61577846(-)$1	234	167	172	15.0000
mmeee	chr1:23395453-23395692(+)$1	239	29	34	15.0000
hhhhh	chr17:1257513-1257741(-)$1	228	68	73	15.0000
e####	chr11:5322375-5322638(-)$1	263	74	79	15.0000
JJJJJ	chr17:57721600-57721858(+)$1	258	26	31	15.0000
e####	chr11:5322479-5322735(-)$1	256	171	176	15.0000
+++++	chr12:53859618-53859841(+)$1	223	30	35	15.0000
ggggg	chr8:101724489-101724706(-)$1	217	14	19	15.0000
$$$$$	chr16:58612540-58612790(-)$1	250	213	218	15.0000
Cffff	chr3:33171333-33171591(+)$1	258	16	21	15.0000
xxxxx	chr11:3789741-3790013(-)$1	272	239	244	15.0000
nnnnn	chr1:205683414-205683714(-)$1	300	49	54	15.0000
=====	chr18:12720418-12720646(+)$1	228	57	62	15.0000
yyyyy	chr2:44126527-44126845(-)$1	318	71	76	15.0000
E::::	chr3:196509396-196509684(+)$1	288	40	45	15.0000
xxxhh	chr2:171910221-171910464(-)$1	243	87	92	15.0000
eeqqq	chr12:53856165-53856374(+)$1	209	12	17	15.0000
::eee	chr1:87538598-87538957(+)$1	359	5	10	15.0000
e$$$$	chr3:156261999-156262242(-)$1	243	170	175	15.0000
HH:::	chr3:52028960-52029169(-)$1	209	31	36	15.0000
ddd[e	chr12:53854758-53854995(+)$1	237	26	31	15.0000
:::::	chr10:76980407-76980642(+)$1	235	58	63	15.0000
ggggg	chr12:53858443-53858646(+)$1	203	20	25	15.0000
tttff	chr8:71499037-71499278(-)$1	241	21	26	15.0000
ff:::	chr17:65082876-65083168(-)$1	292	285	290	15.0000
:::::	chr1:224599118-224599368(-)$1	250	39	44	15.0000
ggggg	chr8:71499306-71499512(-)$1	206	90	95	15.0000
gg)))	chr2:228416711-228416933(+)$1	222	102	107	15.0000
ddooo	chr5:56546688-56547023(+)$1	335	29	34	15.0000
mmmme	chr8:101725283-101725509(-)$1	226	10	15	15.0000
:::::	chr16:68156141-68156362(+)$1	221	62	67	15.0000
gggg3	chr8:101719020-101719253(-)$1	233	212	217	15.0000
dwwww	chrX:53621368-53621673(-)$1	305	75	80	15.0000
fffqq	chr17:57762338-57762593(+)$1	255	64	69	15.0000
:::::	chr10:28900638-28900915(+)$1	277	11	16	15.0000
uuuuu	chr16:3843414-3843728(-)$1	314	76	81	15.0000
ggggg	chr4:83748594-83748875(-)$1	281	45	50	15.0000
gggg3	chr8:101718918-101719126(-)$1	208	85	90	15.0000
oooff	chr6:31807223-31807484(+)$1	261	42	47	15.0000
!bbpp	chr1:54507292-54507580(-)$1	288	259	264	15.0000
ggggg	chr14:102446025-102446315(+)$1	290	23	28	15.0000
:::::	chr16:28845315-28845579(+)$1	264	61	66	15.0000
emmmm	chr2:32445506-32445832(+)$1	326	290	295	15.0000
GGGG{	chr18:23632525-23632866(-)$1	341	44	49	15.0000
!!bbt	chr7:135612434-135612728(-)$1	294	21	26	15.0000
:::::	chr4:122738677-122738940(-)$1	263	2	7	15.0000
d[eee	chr2:54147936-54148251(-)$1	315	266	271	15.0000
mmfff	chr4:122739852-122740128(-)$1	276	47	52	15.0000
[ffff	chr16:68156558-68156821(+)$1	263	201	206	15.0000
=====	chr9:114994278-114994508(-)$1	230	185	190	15.0000
:hhhh	chr12:57106194-57106436(-)$1	242	130	135	15.0000
eee$$	chr4:119738318-119738601(-)$1	283	231	236	15.0000
HHHHH	chr16:1370338-1370559(+)$1	221	82	87	15.0000
nnnnn	chr7:104752814-104753091(+)$1	277	212	217	15.0000
e4444	chr10:27425181-27425415(-)$1	234	46	51	15.0000
$$$$$	chr5:134023774-134024082(+)$1	308	89	94	15.0000

#DB
)))).	chr1:41536173-41536456(-)$1	1	39	44	15.0000
))...	chr11:63525718-63525973(+)$1	1	69	74	15.0000
.....	chr8:71506640-71506868(-)$1	1	56	61	15.0000
(.(((	chr11:18428736-18428972(+)$1	1	165	170	15.0000
)))).	chr3:194149486-194149747(-)$1	1	80	85	15.0000
.....	chr11:5363689-5363941(-)$1	1	97	102	15.0000
.....	chr19:6441146-6441511(-)$1	1	276	281	15.0000
(....	chr2:136437642-136437911(+)$1	1	68	73	15.0000
(....	chr11:114273461-114273716(+)$1	1	3	8	15.0000
.....	chr7:138239342-138239633(+)$1	1	89	94	15.0000
....)	chr16:47195558-47195842(-)$1	1	20	25	15.0000
.))))	chr1:47746689-47746944(-)$1	1	33	38	15.0000
.....	chr11:61133415-61133778(+)$1	1	83	88	15.0000
...))	chr9:127174556-127174819(-)$1	1	40	45	15.0000
)))))	chr4:100869867-100870143(-)$1	1	222	227	15.0000
((..(	chr12:53865377-53865617(+)$1	1	25	30	15.0000
.((((	chr1:111494903-111495156(-)$1	1	31	36	15.0000
.....	chr2:61577612-61577846(-)$1	1	167	172	15.0000
..)))	chr1:23395453-23395692(+)$1	1	29	34	15.0000
)))))	chr17:1257513-1257741(-)$1	1	68	73	15.0000
(....	chr11:5322375-5322638(-)$1	1	74	79	15.0000
(((((	chr17:57721600-57721858(+)$1	1	26	31	15.0000
(....	chr11:5322479-5322735(-)$1	1	171	176	15.0000
.....	chr12:53859618-53859841(+)$1	1	30	35	15.0000
(((((	chr8:101724489-101724706(-)$1	1	14	19	15.0000
.....	chr16:58612540-58612790(-)$1	1	213	218	15.0000
(((((	chr3:33171333-33171591(+)$1	1	16	21	15.0000
.....	chr11:3789741-3790013(-)$1	1	239	244	15.0000
.....	chr1:205683414-205683714(-)$1	1	49	54	15.0000
)))))	chr18:12720418-12720646(+)$1	1	57	62	15.0000
.....	chr2:44126527-44126845(-)$1	1	71	76	15.0000
(....	chr3:196509396-196509684(+)$1	1	40	45	15.0000
...))	chr2:171910221-171910464(-)$1	1	87	92	15.0000
((...	chr12:53856165-53856374(+)$1	1	12	17	15.0000
..(((	chr1:87538598-87538957(+)$1	1	5	10	15.0000
(....	chr3:156261999-156262242(-)$1	1	170	175	15.0000
((...	chr3:52028960-52029169(-)$1	1	31	36	15.0000
(((.(	chr12:53854758-53854995(+)$1	1	26	31	15.0000
.....	chr10:76980407-76980642(+)$1	1	58	63	15.0000
)))))	chr12:53858443-53858646(+)$1	1	20	25	15.0000
...))	chr8:71499037-71499278(-)$1	1	21	26	15.0000
))...	chr17:65082876-65083168(-)$1	1	285	290	15.0000
.....	chr1:224599118-224599368(-)$1	1	39	44	15.0000
)))))	chr8:71499306-71499512(-)$1	1	90	95	15.0000
((...	chr2:228416711-228416933(+)$1	1	102	107	15.0000
((...	chr5:56546688-56547023(+)$1	1	29	34	15.0000
....)	chr8:101725283-101725509(-)$1	1	10	15	15.0000
.....	chr16:68156141-68156362(+)$1	1	62	67	15.0000
)))).	chr8:101719020-101719253(-)$1	1	212	217	15.0000
(....	chrX:53621368-53621673(-)$1	1	75	80	15.0000
(((..	chr17:57762338-57762593(+)$1	1	64	69	15.0000
.....	chr10:28900638-28900915(+)$1	1	11	16	15.0000
.....	chr16:3843414-3843728(-)$1	1	76	81	15.0000
(((((	chr4:83748594-83748875(-)$1	1	45	50	15.0000
)))).	chr8:101718918-101719126(-)$1	1	85	90	15.0000
...))	chr6:31807223-31807484(+)$1	1	42	47	15.0000
.((..	chr1:54507292-54507580(-)$1	1	259	264	15.0000
(((((	chr14:102446025-102446315(+)$1	1	23	28	15.0000
.....	chr16:28845315-28845579(+)$1	1	61	66	15.0000
(....	chr2:32445506-32445832(+)$1	1	290	295	15.0000
((((.	chr18:23632525-23632866(-)$1	1	44	49	15.0000
..((.	chr7:135612434-135612728(-)$1	1	21	26	15.0000
.....	chr4:122738677-122738940(-)$1	1	2	7	15.0000
(.(((	chr2:54147936-54148251(-)$1	1	266	271	15.0000
..)))	chr4:122739852-122740128(-)$1	1	47	52	15.0000
.((((	chr16:68156558-68156821(+)$1	1	201	206	15.0000
)))))	chr9:114994278-114994508(-)$1	1	185	190	15.0000
.((((	chr12:57106194-57106436(-)$1	1	130	135	15.0000
(((..	chr4:119738318-119738601(-)$1	1	231	236	15.0000
(((((	chr16:1370338-1370559(+)$1	1	82	87	15.0000
.....	chr7:104752814-104753091(+)$1	1	212	217	15.0000
)....	chr10:27425181-27425415(-)$1	1	46	51	15.0000
.....	chr5:134023774-134024082(+)$1	1	89	94	15.0000

#PSSM
U : 0.95	u : 0.04	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	

#score	1095.0000000000016
#seq	73
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF305BNZ_LARP7_transcript_m1_run1.nuc.txt

#NT
ccaggguugauuuggccaaucuggcucgcuaggcggguguccccuuccucccucacugcuccacgugcaccccuccugaagcugcaugc	chr2:7281470-7281711(-)$1	241	85	174	204.4999
ccaggguugauucagcugaucuggcuggcuaggcagguguccccuuucuccuucaccgcuccaucugcgucccuccugaagcugcgcac	chr14:90088225-90088469(+)$1	244	82	171	214.2857
ccaggguugauucagcugaucuggcuggcuaggcggguguccccuucuucccucacugcuccaugugugccccucccgaagcugcaugc	chr10:22222013-22222221(+)$1	208	104	193	219.3571
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccacucuaugugagccccuccugaagcugcaugc	chr5:109035336-109035580(-)$1	244	91	180	219.5714
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr6:52860378-52860620(+)$1	242	85	174	238.9999
ccagaguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccguuccaugugcgucccucccgaagcugcgugc	chr13:99857903-99858168(+)$1	265	104	193	229.9999
ccaggguugauucggcugaucuggcuggcuagguggguguccccuuccuaccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr16:81995432-81995673(+)$1	241	144	233	230.9285
ccaggguugauuuggcugaucuggcuggcuaggcuggugucccguuccauccucacugcuccaugcacgucccucccaaagcugcauuc	chr11:100710388-100710651(+)$1	263	18	107	199.6428
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccuuccucacugcuucaugugcgucccucccgaagcugcagcu	chr8:144624202-144624472(+)$1	270	123	212	215.4285
ccaggguugagucggcugaucuggcuggcuaggcggguguccccuuccucccucacugcuccaugugcaucccuccugaagcugcacac	chr11:16863733-16863941(+)$1	208	112	201	223.7142
ccagaguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccguuccaugugcgucccucccgaagcugcgugc	chr13:99857985-99858199(+)$1	214	22	111	229.9999
ccagggaugacuugguugaccuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugagucccucccaaagcugugugc	chr1:55842315-55842566(-)$1	251	89	178	208.0714
ccaggguugauucggcugaucuggcuggcuaggcugguguccccuuccucccucaccacuccuugugugucugucccgaagcugugcac	chr21:26473391-26473649(+)$1	258	99	188	209.9285
ccaggguugauucagcugaucuggcuggcuaggcggguguccccuucuucccucacugcuccaugugugccccucccgaagcugcaugc	chr10:22221971-22222213(+)$1	242	146	235	219.3571
ccaggguugauucagcugaucuggcuggcuaggcggguguccccuuccuuccucccugcuccaugugcaucgcucccgaagcugugcac	chr4:121982436-121982734(-)$1	298	147	236	211.7142
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccacucuaugugagccccuccugaagcugcaugc	chr5:109035391-109035607(-)$1	216	118	207	219.5714
ccaggguugagucggcugaucuggcuggcuaggcggguguccccuuccucccucacugcuccaugugcaucccuccugaagcugcacac	chr11:16863741-16863953(+)$1	212	104	193	223.7142
ccaggguugauccggcugaucugguuggcuagguggguguccccuuccucccucaccucuccaagugugucccucuugaagcugcaugc	chr18:1323886-1324123(-)$1	237	83	172	206.0714
ccaggguugauucggcugaucuggcuggcuaaguggcuguccccuuccucccucaccacuccauguucaugccucccaaagcuguguuc	chr7:111928612-111928819(+)$1	207	111	200	201.3571
ccagaguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccguuccaugugcgucccucccgaagcugcgugc	chr13:99857890-99858102(+)$1	212	117	206	229.9999
ccaggguugauuaggcugaucuggcuggcuagguagguguccccuuccucccucaccacuccaugugcgucccucccgaagcugcacac	chr12:110100821-110101072(-)$1	251	130	219	222.9285
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr6:52860423-52860626(+)$1	203	40	129	238.9999
ccaggguugauucagcugaucuggcuggcuaagcggguguccccuuccucccucaccgcuccaugugcgucccuccugaagcugcaugc	chr15:77028928-77029193(+)$1	265	99	188	226.5714
ccaggguugauucaggugaucuggcuggcuaggccaguguccucuuccucccucacugcuccacgugcaucccucccgaagcugcgcac	chr19:33353685-33353952(-)$1	267	0	89	206.2857
ccaggguugauuuggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr14:90178819-90179056(+)$1	237	81	170	236.8571
ucaggguugauuuggcugaucuggcuggcuagguggguguccccuuccucccucaccacuccaugugcgucccucccaaagcugugugc	chr10:6191536-6191765(+)$1	229	95	184	219.3571
ccaggguugauucagcugaucuggcuggauagguaggugucuccuuccucucucaccgcuccaugugcgucccucccaaagcugcaugc	chr2:47586765-47586988(-)$1	223	114	203	210.2857
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr2:76672289-76672505(-)$1	216	15	104	238.9999
ccaggguugacuuggcugaucgggcuggcuaggcggguguccccuuccucccucaccacuccaugggcgucccucccgaagcugcacac	chr6:151640723-151640930(+)$1	207	90	179	217.6428
ccagaguugauucggcugaucuggcuggcuaggcggcuguucccuucuucccucauugcuccaugugcaucccucccaaagcugugcau	chr15:47564706-47564936(+)$1	230	133	222	198.7857
ccaggguugauucgguugaucuugcuggcuagacggguguccccuuccucccucacugcuccacaugcgucccucccaaagcugcaugc	chr4:7113986-7114204(-)$1	218	124	213	209.5714
ccaggguugauuuggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr14:90178782-90178992(+)$1	210	118	207	236.8571
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccacucuaugugagccccuccugaagcugcaugc	chr5:109035380-109035591(-)$1	211	102	191	219.5714
ccaggguugacuuggcugaucgggcuggcuaggcggguguccccuuccucccucaccacuccaugggcgucccucccgaagcugcacac	chr6:151640752-151640970(+)$1	218	61	150	217.6428
ccaggguugauucagcugaucuggcuggcuaggcggguguccccuuccucucucacugcuccaugugcaucucuccugaagcugugugc	chr5:113589159-113589406(+)$1	247	87	176	215.4999
ccaggguugauucagcugaucuggcuggcuaggcagguguccccuuucuccuucaccgcuccaucugcgucccuccugaagcugcgcac	chr14:90088161-90088404(+)$1	243	146	235	214.2857
cugggguugauucggcugaucuggcuggcuaggcaggugugcccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr12:112704857-112705108(+)$1	251	69	158	221.5714
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr6:52860428-52860638(+)$1	210	35	124	238.9999
ccaggguugauuuggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr14:90178856-90179075(+)$1	219	44	133	236.8571
ccaggguugauuugacugaucuggcuggcuaggcggguguccccuuccucccucaucacuccaugugcgucccucccaaagcugugugc	chr2:134353622-134353868(+)$1	246	85	174	218.2857
ccaggguugauucggcugaucuggcuggcuagguggguguccccuuccuaccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr16:81995473-81995682(+)$1	209	103	192	230.9285
ccaggguugauacagcugaucuggcuggcuagguggguguccccuuccucucucaccgcuccacgugcgucccucccaaagcugcgcgc	chr5:143915095-143915334(-)$1	239	147	236	216.4285
ccaggguugauucggcugaucuggcuggcuaggcgggugucccuuuccucccucaccgcuccaugugcgucccucccgaagcugugcac	chr17:70660034-70660285(-)$1	251	40	129	229.2142
ccaggguugacuuggcugaucgggcuggcuaggcggguguccccuuccucccucaccacuccaugggcgucccucccgaagcugcacac	chr6:151640730-151640952(+)$1	222	83	172	217.6428
ccaggguugauucagcugaucuggcuggcuaggcagguguccccuuccucccucaccacuccaugugcaucccucccaaagcugcacgc	chr9:77414748-77414952(+)$1	204	108	197	223.2857
ccaggguugagucggcugaucuggcuggcuaggcggguguccccuuccucccucacugcuccaugugcaucccuccugaagcugcacac	chr11:16863753-16863987(+)$1	234	92	181	223.7142
ccaggguugauuuggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr14:90178814-90179019(+)$1	205	86	175	236.8571
ccaaaguugauucggcugaucuggcuggcuaggcagguguccccuuccucccucaccacuccauaugcguccuucccaaagcugcacuc	chr4:4922643-4922886(-)$1	243	141	230	208.5714
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr2:76672314-76672565(-)$1	251	75	164	238.9999
ccagaguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccguuccaugugcgucccucccgaagcugcgugc	chr13:99858007-99858218(+)$1	211	0	89	229.9999
ccagaguugauuuggcugaucugguuggcuaggcggguguccccuuccucccucaccgcuccacaugugucccuccugaggcugcauac	chr7:3038687-3038937(+)$1	250	87	176	204.9999
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr6:52860420-52860623(+)$1	203	43	132	238.9999
ccaggguugauuuggcugaucuggcuggcuaggcggguguccccuuccucccucacugcuccaugugcgucccuccugaagcugagcgc	chr12:14706760-14707006(-)$1	246	148	237	228.4285
ccaggguuguuucagcugaucuggcuggcuaggcagguguccccuuccucccucacugcuccacgugugucccucaugaagcugugcgc	chr8:50242688-50242937(+)$1	249	126	215	208.3571
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr6:52860320-52860561(+)$1	241	143	232	238.9999
ccaggguugauuuggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr14:90178875-90179100(+)$1	225	25	114	236.8571
ccaggguugguucggcugaucuggcuggcuaggcggguguccccuuccucccucacugcuccaugugcgucccuccugaagcugugugc	chr5:6848434-6848670(-)$1	236	141	230	225.8571
ccaggguugauucggcugaucugacugguuagacggguguccccuuccucccucacugcuccauaugcaucccucccaaagcugcaugc	chr20:11799598-11799841(-)$1	243	148	237	210.4285
ccaggguugauuuggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr14:90178792-90178996(+)$1	204	108	197	236.8571
ccaggguugauucagcugaucuggcuggcuaggcggguguccccuuccucccucaccacuccaugugcaucccucccaaagcugcaagc	chr11:73543594-73543806(-)$1	212	117	206	223.5714
ccaggguugauucggcugaucuggcuggcuaggcagguauccccuuccucccucacugcucuaugugccucccuccugaagcggugcuc	chr14:50535190-50535451(+)$1	261	140	229	207.2857
ccaggguugauucggcugaucuggcuggcuaggcagguguccccuuccucccucaccacuccaugugcaucccucucaaagcuaugcac	chr20:17557010-17557255(-)$1	245	146	235	213.2142
ccaggguugauuuggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr14:90178812-90179014(+)$1	202	88	177	236.8571
cuaggguugaucaggcugaucgggcuggcuagguaggugucuccuuccucccucacugcuccaugugugucucucccaaagcugcgugc	chr10:25197587-25197843(-)$1	256	148	237	197.0714
ccaggguugaucuggcugaucuagcuggcuaggcggguguccccuuccccccucaccacuccauguucaucccucccaaagcugcaugc	chr22:26360036-26360269(-)$1	233	76	165	207.9285
ccaggguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccgcuccaugugcgucccucccgaagcugcgcgc	chr6:52860426-52860628(+)$1	202	37	126	238.9999
ccagaguugauucggcugaucuggcuggcuaggcggguguccccuuccucccucaccguuccaugugcgucccucccgaagcugcgugc	chr13:99857999-99858207(+)$1	208	8	97	229.9999
ccaggguugauucggcugaucuggcuggcuaggcgggugucccuuuccucccucaccgcuccaugugcgucccucccgaagcugugcac	chr17:70660085-70660340(-)$1	255	95	184	229.2142
ccaggguugauccggcugaucugguuggcuagguggguguccccuuccucccucaccucuccaagugugucccucuugaagcugcaugc	chr18:1323923-1324165(-)$1	242	125	214	206.0714

#otherMatches

#Struct PSSM
fffffnnnnnffffff]ddddccc22bb333==========:::EEEEE______EEEEEYYCCC}DDDD:::::dddd[bbnnnnnbb	chr3:142392334-142392584(+)$1	250	152	241	217.7142
tttdddd::::::eeeeellleeeee:::::JJJJJJJJJJCCC}DDDD::::::FFFFFFLLLFFFFFF:::::dddd[bbnnnnnbb	chr2:7281470-7281711(-)$1	241	85	174	204.4999
tttccc]dddd:eeeeennnnneeeeeBB}BB}EEEEEZZZEEEEEEEEEEZZZBB}GGGGGGG:dddd[dddd[ffffffccc[a!!d	chr14:90088225-90088469(+)$1	244	82	171	214.2857
eeeeeeeeellleeeee333eeeeeccc333==========abb333iiiiiiiii22eeeee]bb:::::dddddddd[bbnnnnnbb	chr10:22222013-22222221(+)$1	208	104	193	219.3571
gg::::::::::ggggggg[a!!bb[ddddccc[ccc[a++++++++++++eeeeeqqqqqqqqeeeeeaccc]ccc22ddddbb22a]	chr5:109035336-109035580(-)$1	244	91	180	219.5714
eeeeeeeeellleeeee333eeeeeccc333==========abb333a]ggggggg333ccc::ffffff!!bbnnnnnbb22ffffff	chr6:52860378-52860620(+)$1	242	85	174	238.9999
fffffddddllldddd333ffffff:bb!!ccc[bbmmmmbbccc]bb:GGGGGGGZZZDDDDbb!!eeeeebbadddd[bbnnnnnbb	chr13:99857903-99858168(+)$1	265	104	193	229.9999
gg]a]ccc333eeeee]eeeeeccc[bb!!gggggggrrrrrrrrrggggggg22bbccc::::ffffff!!bbnnnnnbb22ffffff	chr16:81995432-81995673(+)$1	241	144	233	230.9285
eeeeennnnneeeee]eeeeeccc]dddd]bb::CCCNNNNNEEEEELLLDDDDLLLHHHHHHHH::eeeee[bb$$$$$ddddooooo	chr11:100710388-100710651(+)$1	263	18	107	199.6428
eeeeeeeeellleeeee333eeeeeccc333==========>>>>>>>>>>>>>>>>bb22a22a22bb]eeeee::ffffff[fffff	chr8:144624202-144624472(+)$1	270	123	212	215.4285
uuudddd::hhhhhhhhnnnnnhhhhhhhh:JJJJJJJJJJABB?????GGGGGGGcccpppppppccc:::::::BB}BBYYFFFFFF	chr11:16863733-16863941(+)$1	208	112	201	223.7142
cc[bboooooobbccc]ddddccc22bb333iiiiiiiii:::::ffffffbb"""bb####ccc!!eeeeebbadddd[bbnnnnnbb	chr13:99857985-99858199(+)$1	214	22	111	229.9999
fffff"""ccclllccc22ffffffccc333==========abb]bbiiiiiiiii:CCCAEEEEEKKDDDDLLLHHHHHHHHKKBB{C	chr1:55842315-55842566(-)$1	251	89	178	208.0714
cccccc:::::ffffffnnnnnffffff:::CCC}HHHHHHHH::FFFFFF::ccc[bbnnnnnbbcccffffff(((((((((bb!!d	chr21:26473391-26473649(+)$1	258	99	188	209.9285
eeeeeeeeellleeeee333eeeeeccc333==========abb333iiiiiiiii22eeeee]bb:::::::::dddd[bbnnnnnbb	chr10:22221971-22222213(+)$1	242	146	235	219.3571
rriiiiiiiii:eeeeennnnneeeeeBB}BB}EEEEEDDDDEEEEEDDDDDDDDYYDDDD:::ffffff[cccnnnnnccc]ffffff	chr4:121982436-121982734(-)$1	298	147	236	211.7142
gg::::::::::ggggggg[a!!bb[ddddccc[ccc[a++++++++++++eeeeeqqqqqqqqeeeeeaccc]ccc22ddddbb22a]	chr5:109035391-109035607(-)$1	216	118	207	219.5714
uuudddd::hhhhhhhhnnnnnhhhhhhhh:JJJJJJJJJJ::ggggggg!!bbdddd$$$$$ffffffbboooooobb333ffffff]	chr11:16863741-16863953(+)$1	212	104	193	223.7142
cc[bboooooobbccc:ccc[bb[dddd!!ggggggg[assssssssssa]ggggggg22dddd]bb]cccffffff"""ddddooooo	chr18:1323886-1324123(-)$1	237	83	172	206.0714
ffdddd!!bb"""bb!!ccc!!eeeeeooooooeeeeeccc]bb]bb22dddd:::::CCCCCC}GGGGGGG::::::::ddddooooo	chr7:111928612-111928819(+)$1	207	111	200	201.3571
ggffffff22ccc22bb]ccc]ccc22gggggggccc[aqqqqqqqqa]ccc:::FFFFFFYYA}CCCZZZCCC:dddd[bbnnnnnbb	chr13:99857890-99858102(+)$1	212	117	206	229.9999
tttggggggg]ffffff22bbggggggg::ccc[cccnnnnnccc]cccGGGGGGGFFFFFFYYDDDDYYBB}CCC}BBGGGGGGG???	chr12:110100821-110101072(-)$1	251	130	219	222.9285
eeeeeeeeellleeeee333eeeeeccc333==========EEEEEBB::dddd!!bb!!bb!!ffffff!!bbnnnnnbb22ffffff	chr6:52860423-52860626(+)$1	203	40	129	238.9999
eeeeeeeeellleeeee333eeeeeccc4444hhhhhhhhbb333ccc]ggggggg333dddd]bb333bbdddddddd[bbnnnnnbb	chr15:77028928-77029193(+)$1	265	99	188	226.5714
::dddd!!bb"""ccc####ffffffnnnnnffffff333ccc22bb22dddd::DDDD:::::eeeeebboooooobb333eeeee::	chr19:33353685-33353952(-)$1	267	0	89	206.2857
fffffnnnnnffffff]ddddccc22bb333==========abb333a]ggggggg333ccc]ccc:cccdddd[ffffffccc####c	chr14:90178819-90179056(+)$1	237	81	170	236.8571
fffffnnnnnffffff]cccdddd::HHHHHHHHcccmmmmccc:::::GGGGGGGYYCCCCCCFFFFFF:::::bb!!cccnnnnncc	chr10:6191536-6191765(+)$1	229	95	184	219.3571
eeeeeeeeellleeeee333eeeeeccc333==========::::ffffff[bbccc####eeeeebbuuuuuuuuuuuubb]eeeee3	chr2:47586765-47586988(-)$1	223	114	203	210.2857
OOOEEEEEKKEEEEEKKA{FFFFFF{BBKKBBDDDDDDDD{EEEEE:ddddbb"""bb####ccc!!eeeeebbadddd[bbnnnnnbb	chr2:76672289-76672505(-)$1	216	15	104	238.9999
fffffnnnnnffffff]ffffffcccnnnnncccEEEEEZZZDDDDEEEEE|||||||EEEEE:ccc[cccdddd####ddddqqqqqq	chr6:151640723-151640930(+)$1	207	90	179	217.6428
fffff:::bb!!ffffff[eeeeemmmmeeeeeffffff]bb:::BBYYGGGGGGGcccpppppppccc::bb[eeeee[bblllbb]e	chr15:47564706-47564936(+)$1	230	133	222	198.7857
b[iiiiiiiiillliiiiiiiiibbdddd22==========abb333a]ggggggg:bbpppppppbbEEEEE}DDDD:cccnnnnncc	chr4:7113986-7114204(-)$1	218	124	213	209.5714
fffffnnnnnffffff]ddddccc22bb333==========abb333a]ggggggg333ccc::ffffff!!bbnnnnnbb22ffffff	chr14:90178782-90178992(+)$1	210	118	207	236.8571
gg::::::::::ggggggg[a!!bb[ddddccc[ccc[a++++++++++++eeeeeqqqqqqqqeeeeeaccc]ccc22ddddbb22a]	chr5:109035380-109035591(-)$1	211	102	191	219.5714
fffffnnnnnffffff]ffffffcccnnnnncccEEEEEZZZDDDDEEEEE|||||||EEEEE:ccc[allla]ccc::ffffffffff	chr6:151640752-151640970(+)$1	218	61	150	217.6428
eeeeeeeeellleeeee333eeeee:CCC}BB}EEEEEDDDDEEEEE}EEEEE::ffffff[ffffff%%%%%%dddd!!dddd[a[bb	chr5:113589159-113589406(+)$1	247	87	176	215.4999
tttccc]dddd:eeeeennnnneeeeeBB}BB}EEEEEZZZEEEEEYYDDDDYYFFFFFF}BB}EEEEE?????DDDDZZZCCC}AYYF	chr14:90088161-90088404(+)$1	243	146	235	214.2857
qeeeee]dddd::BBKKA{FFFFFF{BBKKBBDDDDJJJJJJJJJJBB::dddd!!bb!!bb!!ffffff!!bbnnnnnbb22ffffff	chr12:112704857-112705108(+)$1	251	69	158	221.5714
eeeeeeeeellleeeee333eeeeeccc333==========:::FFFFFFdddd!!bb!!bb!!ffffff!!bbnnnnnbb22ffffff	chr6:52860428-52860638(+)$1	210	35	124	238.9999
fffffnnnnnffffff]ddddccc22bb333==========abb333a]ggggggg:ccc[a[dddd"""dddd[ffffffccc####c	chr14:90178856-90179075(+)$1	219	44	133	236.8571
eeee####ddddnnnnndddd333eeeeeIIIIIIIII@@@@@@@@@@@@@@@@@DDDDGGGGGGG:cccdddd[ffffffccca[a[c	chr2:134353622-134353868(+)$1	246	85	174	218.2857
gg]a]ccc333eeeee]dddddddd:bb!!gggggggrrrrrrrrrggggggg22bbDDDD:::ffffff!!bbnnnnnbb22ffffff	chr16:81995473-81995682(+)$1	209	103	192	230.9285
cc:JJJJJJJJJJJJ:::ffffffmmmmffffffcccmmmmccc::::BBZZZFFFFFF:::::ffffff!!bbnnnnnbb22ffffff	chr5:143915095-143915334(-)$1	239	147	236	216.4285
ggFFFFFFKKBB{BBKKA{FFFFFF{BBKKBBDDDDDDDDEEEEE{BB::dddd!!bb!!ccc[eeeee"""bbnnnnnbb333eeeee	chr17:70660034-70660285(-)$1	251	40	129	229.2142
fffffnnnnnffffff]ffffffcccnnnnncccEEEEE@@@@@@@@@@@GGGGGGGYYCCC}BB~~~~CCC////////CCC}BB|||	chr6:151640730-151640952(+)$1	222	83	172	217.6428
eeeeeeeeellleeeee333eeeeeccc333==========abb333a]ggggggg333ccc::eeeee"""bbnnnnnbb]eeeee::	chr9:77414748-77414952(+)$1	204	108	197	223.2857
:EEEEE{BBhhhhhhhhnnnnnhhhhhhhh::::ccclllcccggggggg!!bbdddd$$$$$ffffffbboooooobb333ffffff]	chr11:16863753-16863987(+)$1	234	92	181	223.7142
fffffnnnnnffffff]ddddccc22bb333==========abb333a]ggggggg333ccc]ccc:eeeeebbadddd[bbnnnnnbb	chr14:90178814-90179019(+)$1	205	86	175	236.8571
cc[bbnnnnnbb]ccc]ddddccc22bb333==========22a22bb4444eeeee]ccc55555ffffff22ccc22dddd55555c	chr4:4922643-4922886(-)$1	243	141	230	208.5714
cc[bboooooobbccc]ddddcccEEEEE{CCC{FFFFFF::::FFFFFFdddd!!bb!!bb!!ffffff!!bbnnnnnbb22ffffff	chr2:76672314-76672565(-)$1	251	75	164	238.9999
::FFFFFFKKBB{BBKKA{FFFFFF{BBKKBBDDDDDDDD{DDDDeeeee!!bbdddd"""eeeeebb[bboooooobb]bb]eeeee2	chr13:99858007-99858218(+)$1	211	0	89	229.9999
eeeeennnnneeeee]eeeeeccc]dddd:ccc[cccmmmmccc22cccGGGGGGGcccpppppppccc::::FFFFFFFFFFFF::::	chr7:3038687-3038937(+)$1	250	87	176	204.9999
eeeeeeeeellleeeee333eeeeeccc333==========abb333a]ggggggg:CCC{A{DDDDLLLDDDD{FFFFFFCCC:::::	chr6:52860420-52860623(+)$1	203	43	132	238.9999
nnnnggggggg]dddd]ccc]a]bb]ggggggg:cccmmmmccc:::::HHHHHHHHYYDDDDZZZEEEEE::::dddd[bbnnnnnbb	chr12:14706760-14707006(-)$1	246	148	237	228.4285
eeeeeeeeellleeeee333eeeeeccc333iiiiiiiiibb333bb22ggggggg333dddd]ffffff22ccc:::ddddnnnnndd	chr8:50242688-50242937(+)$1	249	126	215	208.3571
eeeeeeeeellleeeee333eeeeeccc333==========666666a22bb4444eeeeeeeeee]bb55555ccc]dddd]ffffff	chr6:52860320-52860561(+)$1	241	143	232	238.9999
fffffnnnnnffffff]ddddccc22bb333==========EEEEEBB::dddd!!bb!!bb!!ffffff!!bbnnnnnbb22ffffff	chr14:90178875-90179100(+)$1	225	25	114	236.8571
fffff[eeeeellleeeeeffffffccc333==========abb333a]ggggggg333dddd]bb666666eeeee88888888eeee	chr5:6848434-6848670(-)$1	236	141	230	225.8571
bb[bboooooobbbb]eeeee55555ccc22==========abb55555gggggggcccpppppppccc:BBCCC:bb[cccnnnnncc	chr20:11799598-11799841(-)$1	243	148	237	210.4285
fffffnnnnnffffff]ddddccc22bb333==========abb333a]ggggggg333ccc]ccc333bb::::dddd[bbnnnnnbb	chr14:90178792-90178996(+)$1	204	108	197	236.8571
eeeeeeeeellleeeee333eeeeeccc333iiiiiiiiibb333bb22gggggggcccnnnnnccc:::::::::::::ddddooooo	chr11:73543594-73543806(-)$1	212	117	206	223.5714
ggdddd!!bb"""bb"""eeeee[bbmmmmbb]eeeee333bb22bb22dddd:::IIIIIIIII}BB:::dddd%%%%%%ddddpppp	chr14:50535190-50535451(+)$1	261	140	229	207.2857
bb[bboooooobbbb]eeeeeccc22bb333iiiiiiiiibb333bb22ggggggg::::bb!!ffffff!!bbnnnnnbb22ffffff	chr20:17557010-17557255(-)$1	245	146	235	213.2142
fffffnnnnnffffff]ddddccc22bb333==========abb333a]ggggggg333ccc]ccc:eeeeebbadddd[bbnnnnnbb	chr14:90178812-90179014(+)$1	202	88	177	236.8571
nnnnggggggg22bb]dddd]bbccc==========>>>>>>>>>>>>>ggggggga]dddd:::::dddd[ccc####eeeeeooooo	chr10:25197587-25197843(-)$1	256	148	237	197.0714
fffffnnnnnffffff]dddd:::::bb!!ccc[bbmmmmbbccc22bb:GGGGGGG:DDDD::::ffffff[bb"""ddddnnnnndd	chr22:26360036-26360269(-)$1	233	76	165	207.9285
eeeeeeeeellleeeee333eeeeeccc333==========EEEEEBB::dddd!!bb!!bb!!ffffff!!bbnnnnnbb22ffffff	chr6:52860426-52860628(+)$1	202	37	126	238.9999
LLFFFFFFKKBB{BBKKA{FFFFFF{BBKKBBDDDDDDDD{DDDDeeeee!!bbdddd"""eeeeebb[bboooooobb]bb]eeeee2	chr13:99857999-99858207(+)$1	208	8	97	229.9999
ggdddd"""eeeee[ccc[bbnnnnnbb]ccc]eeeee22dddd:::::::EEEEE:CCC{A{DDDDLLLDDDD{FFFFFFCCC:::::	chr17:70660085-70660340(-)$1	255	95	184	229.2142
cc[bboooooobbccc]ddddccc]dddd]eeeee22ccc7777777a]ggggggg333ffffff]eeeeeffffff"""ddddooooo	chr18:1323923-1324165(-)$1	242	125	214	206.0714

#DB
(((((.....)))))).)))))))..))...))))))))))...)))))......)))))..))).)))).....((((.((.....))	chr3:142392334-142392584(+)$1	1	152	241	217.7142
...))))......(((((...))))).....))))))))))))).))))......((((((...((((((.....((((.((.....))	chr2:7281470-7281711(-)$1	1	85	174	204.4999
...))).)))).(((((.....))))))).)).)))))...))))))))))...)).))))))).((((.((((.(((((((((.(..(	chr14:90088225-90088469(+)$1	1	82	171	214.2857
(((((((((...)))))...))))))))...)))))))))))))...)))))))))..))))).)).....((((((((.((.....))	chr10:22222013-22222221(+)$1	1	104	193	219.3571
))..........(((((((.(..((.(((((((.(((.(............(((((........))))))))).)))..))))))..).	chr5:109035336-109035580(-)$1	1	91	180	219.5714
(((((((((...)))))...))))))))...)))))))))))))...).)))))))...)))..((((((..((.....))..))))))	chr6:52860378-52860620(+)$1	1	85	174	238.9999
(((((((((...))))...)))))).((..(((.((....))))).)).)))))))...))))((..((((((((((((.((.....))	chr13:99857903-99858168(+)$1	1	104	193	229.9999
)).).)))...))))).)))))(((.((..(((((((.........)))))))..)))))....((((((..((.....))..))))))	chr16:81995432-81995673(+)$1	1	144	233	230.9285
(((((.....))))).)))))))).)))).))..(((.....(((((...((((...((((((((..(((((.((.....((((.....	chr11:100710388-100710651(+)$1	1	18	107	199.6428
(((((((((...)))))...))))))))...))))))))))................))..)..)..)).)))))..((((((.(((((	chr8:144624202-144624472(+)$1	1	123	212	215.4285
...))))..((((((((.....)))))))).))))))))))))).....)))))))(((.......))).......)).))..))))))	chr11:16863733-16863941(+)$1	1	112	201	223.7142
((.((......))))).)))))))..))...))))))))).....((((((((...((....(((..((((((((((((.((.....))	chr13:99857985-99858199(+)$1	1	22	111	229.9999
(((((...(((...)))..)))))))))...))))))))))))).))))))))))).(((((((((..((((...((((((((..((.(	chr1:55842315-55842566(-)$1	1	89	178	208.0714
)))))).....((((((.....))))))...))).))))))))..((((((..(((.((.....)))))((((((.........((..(	chr21:26473391-26473649(+)$1	1	99	188	209.9285
(((((((((...)))))...))))))))...)))))))))))))...)))))))))..))))).)).........((((.((.....))	chr10:22221971-22222213(+)$1	1	146	235	219.3571
..))))))))).(((((.....))))))).)).))))))))))))))))))))))..))))...((((((.(((.....))).))))))	chr4:121982436-121982734(-)$1	1	147	236	211.7142
))..........(((((((.(..((.(((((((.(((.(............(((((........))))))))).)))..))))))..).	chr5:109035391-109035607(-)$1	1	118	207	219.5714
...))))..((((((((.....)))))))).))))))))))..(((((((..((((((.....((((((((......))...)))))).	chr11:16863741-16863953(+)$1	1	104	193	223.7142
((.((......))))).(((.((.((((..(((((((.(..........).)))))))..)))).)).)))((((((...((((.....	chr18:1323886-1324123(-)$1	1	83	172	206.0714
))((((..((...((..(((..(((((......)))))))).)).))..)))).....)))))).)))))))........((((.....	chr7:111928612-111928819(+)$1	1	111	200	201.3571
))))))))..)))..)).))).)))..)))))))(((.(........).)))...))))))..).)))...))).((((.((.....))	chr13:99857890-99858102(+)$1	1	117	206	229.9999
...))))))).))))))..)))))))))..(((.(((.....))).))))))))))))))))..))))..)).))).)))))))))...	chr12:110100821-110101072(-)$1	1	130	219	222.9285
(((((((((...)))))...))))))))...))))))))))(((((((..((((..((..((..((((((..((.....))..))))))	chr6:52860423-52860626(+)$1	1	40	129	238.9999
(((((((((...)))))...))))))))....))))))))))...))).)))))))...)))).))...))((((((((.((.....))	chr15:77028928-77029193(+)$1	1	99	188	226.5714
..((((..((...(((....((((((.....))))))...)))..))..))))..((((.....(((((((......))...)))))..	chr19:33353685-33353952(-)$1	1	0	89	206.2857
(((((.....)))))).)))))))..))...)))))))))))))...).)))))))...))).))).(((((((.(((((((((....(	chr14:90178819-90179056(+)$1	1	81	170	236.8571
(((((.....)))))).)))))))..))))))))(((....))).....)))))))..)))))))))))).....((..(((.....))	chr10:6191536-6191765(+)$1	1	95	184	219.3571
(((((((((...)))))...))))))))...))))))))))....((((((.(((((....(((((((............)).))))).	chr2:47586765-47586988(-)$1	1	114	203	210.2857
...(((((..(((((..(.((((((.((..((((((((((.(((((.((((((...((....(((..((((((((((((.((.....))	chr2:76672289-76672505(-)$1	1	15	104	238.9999
(((((.....)))))).))))))(((.....))))))))...))))))))).......))))).(((.(((((((....((((......	chr6:151640723-151640930(+)$1	1	90	179	217.6428
)))))...((..((((((.(((((....))))))))))).))...))..)))))))(((.......)))..((.(((((.((...)).)	chr15:47564706-47564936(+)$1	1	133	222	198.7857
(.(((((((((...)))))))))))))))..)))))))))))))...).))))))).((.......))))))).)))).(((.....))	chr4:7113986-7114204(-)$1	1	124	213	209.5714
(((((.....)))))).)))))))..))...)))))))))))))...).)))))))...)))..((((((..((.....))..))))))	chr14:90178782-90178992(+)$1	1	118	207	236.8571
))..........(((((((.(..((.(((((((.(((.(............(((((........))))))))).)))..))))))..).	chr5:109035380-109035591(-)$1	1	102	191	219.5714
(((((.....)))))).))))))(((.....))))))))...))))))))).......))))).(((.(...).)))..((((((((((	chr6:151640752-151640970(+)$1	1	61	150	217.6428
(((((((((...)))))...))))).))).)).)))))))))))))).)))))..((((((.((((((......((((..((((.(.((	chr5:113589159-113589406(+)$1	1	87	176	215.4999
...))).)))).(((((.....))))))).)).)))))...)))))..))))..)))))).)).))))).....))))...))).)..)	chr14:90088161-90088404(+)$1	1	146	235	214.2857
.))))).))))..((..(.((((((.((..((((((((((((((((((..((((..((..((..((((((..((.....))..))))))	chr12:112704857-112705108(+)$1	1	69	158	221.5714
(((((((((...)))))...))))))))...))))))))))...((((((((((..((..((..((((((..((.....))..))))))	chr6:52860428-52860638(+)$1	1	35	124	238.9999
(((((.....)))))).)))))))..))...)))))))))))))...).))))))).(((.(.((((...((((.(((((((((....(	chr14:90178856-90179075(+)$1	1	44	133	236.8571
((((....((((.....))))...)))))))))))))).................))))))))))).(((((((.((((((((((.(.(	chr2:134353622-134353868(+)$1	1	85	174	218.2857
)).).)))...))))).)))))))).((..(((((((.........)))))))..))))))...((((((..((.....))..))))))	chr16:81995473-81995682(+)$1	1	103	192	230.9285
)).))))))))))))...((((((....))))))(((....)))....))...)))))).....((((((..((.....))..))))))	chr5:143915095-143915334(-)$1	1	147	236	216.4285
))((((((..((.((..(.((((((.((..(((((((((((((((.((..((((..((..(((.(((((...((.....))...)))))	chr17:70660034-70660285(-)$1	1	40	129	229.2142
(((((.....)))))).))))))(((.....))))))))...........)))))))..))).))....)))........))).))...	chr6:151640730-151640952(+)$1	1	83	172	217.6428
(((((((((...)))))...))))))))...)))))))))))))...).)))))))...)))..(((((...((.....)).)))))..	chr9:77414748-77414952(+)$1	1	108	197	223.2857
.(((((.((((((((((.....))))))))....(((...)))(((((((..((((((.....((((((((......))...)))))).	chr11:16863753-16863987(+)$1	1	92	181	223.7142
(((((.....)))))).)))))))..))...)))))))))))))...).)))))))...))).))).((((((((((((.((.....))	chr14:90178814-90179019(+)$1	1	86	175	236.8571
((.((.....)).))).)))))))..))...))))))))))..)..))....))))).))).....))))))..)))..)))).....)	chr4:4922643-4922886(-)$1	1	141	230	208.5714
((.((......))))).)))))))(((((.(((.((((((....((((((((((..((..((..((((((..((.....))..))))))	chr2:76672314-76672565(-)$1	1	75	164	238.9999
..((((((..((.((..(.((((((.((..((((((((((.(((((((((..((((((...(((((((.((......)).)).))))).	chr13:99858007-99858218(+)$1	1	0	89	229.9999
(((((.....))))).)))))))).)))).(((.(((....)))..))))))))))(((.......)))....))))))((((((....	chr7:3038687-3038937(+)$1	1	87	176	204.9999
(((((((((...)))))...))))))))...)))))))))))))...).))))))).(((.(.((((...((((.(((((((((.....	chr6:52860420-52860623(+)$1	1	43	132	238.9999
....))))))).)))).))).).)).))))))).(((....))).....))))))))..))))...)))))....((((.((.....))	chr12:14706760-14707006(-)$1	1	148	237	228.4285
(((((((((...)))))...))))))))...)))))))))))...))..)))))))...)))).))))))..)))...((((.....))	chr8:50242688-50242937(+)$1	1	126	215	208.3571
(((((((((...)))))...))))))))...))))))))))......)..))....)))))))))).)).....))).)))).))))))	chr6:52860320-52860561(+)$1	1	143	232	238.9999
(((((.....)))))).)))))))..))...))))))))))(((((((..((((..((..((..((((((..((.....))..))))))	chr14:90178875-90179100(+)$1	1	25	114	236.8571
(((((.(((((...))))))))))))))...)))))))))))))...).)))))))...)))).))......)))))........))))	chr5:6848434-6848670(-)$1	1	141	230	225.8571
((.((......)))).))))).....)))..))))))))))))).....)))))))(((.......))).))))).((.(((.....))	chr20:11799598-11799841(-)$1	1	148	237	210.4285
(((((.....)))))).)))))))..))...)))))))))))))...).)))))))...))).)))...))....((((.((.....))	chr14:90178792-90178996(+)$1	1	108	197	236.8571
(((((((((...)))))...))))))))...)))))))))))...))..)))))))(((.....))).............((((.....	chr11:73543594-73543806(-)$1	1	117	206	223.5714
))((((..((...((...(((((.((....)).)))))...))..))..))))...))))))))).))...((((......((((....	chr14:50535190-50535451(+)$1	1	140	229	207.2857
((.((......)))).))))))))..))...)))))))))))...))..)))))))....((..((((((..((.....))..))))))	chr20:17557010-17557255(-)$1	1	146	235	213.2142
(((((.....)))))).)))))))..))...)))))))))))))...).)))))))...))).))).((((((((((((.((.....))	chr14:90178812-90179014(+)$1	1	88	177	236.8571
....)))))))..)).)))).))))))))))))))).............)))))))).)))).....((((.(((....(((((.....	chr10:25197587-25197843(-)$1	1	148	237	197.0714
(((((.....)))))).)))).....((..(((.((....)))))..)).))))))).((((....((((((.((...((((.....))	chr22:26360036-26360269(-)$1	1	76	165	207.9285
(((((((((...)))))...))))))))...))))))))))(((((((..((((..((..((..((((((..((.....))..))))))	chr6:52860426-52860628(+)$1	1	37	126	238.9999
..((((((..((.((..(.((((((.((..((((((((((.(((((((((..((((((...(((((((.((......)).)).))))).	chr13:99857999-99858207(+)$1	1	8	97	229.9999
))((((...(((((.(((.((.....)).))).)))))..)))).......))))).(((.(.((((...((((.(((((((((.....	chr17:70660085-70660340(-)$1	1	95	184	229.2142
((.((......))))).))))))).)))).)))))..))).......).)))))))...)))))).)))))((((((...((((.....	chr18:1323923-1324165(-)$1	1	125	214	206.0714

#PSSM
c : 0.98	u : 0.01	
c : 0.97	u : 0.02	
a : 0.98	g : 0.01	
g : 0.98	a : 0.01	
g : 0.88	a : 0.11	
g : 0.99	
u : 0.98	a : 0.01	
u : 0.99	
g : 0.99	
a : 0.97	u : 0.01	g : 0.01	
u : 0.89	c : 0.05	g : 0.04	
u : 0.92	c : 0.05	a : 0.01	
c : 0.69	u : 0.27	a : 0.02	
g : 0.81	a : 0.18	
g : 0.98	a : 0.01	
c : 0.95	u : 0.02	g : 0.01	
u : 0.98	c : 0.01	
g : 0.98	a : 0.01	
a : 0.99	
u : 0.98	c : 0.01	
c : 0.99	
u : 0.94	g : 0.05	
g : 0.97	u : 0.01	a : 0.01	
g : 0.98	a : 0.01	
c : 0.95	u : 0.04	
u : 0.99	
g : 0.98	c : 0.01	
g : 0.99	
c : 0.97	a : 0.01	u : 0.01	
u : 0.99	
a : 0.99	
g : 0.97	a : 0.02	
g : 0.97	a : 0.02	
c : 0.85	u : 0.14	
g : 0.78	a : 0.17	u : 0.02	c : 0.01	
g : 0.98	a : 0.01	
g : 0.97	c : 0.02	
u : 0.99	
g : 0.98	a : 0.01	
u : 0.99	
c : 0.97	u : 0.01	g : 0.01	
c : 0.97	u : 0.02	
c : 0.98	u : 0.01	
c : 0.95	u : 0.02	g : 0.01	
u : 0.99	
u : 0.99	
c : 0.97	u : 0.02	
c : 0.95	u : 0.04	
u : 0.97	a : 0.01	c : 0.01	
c : 0.92	u : 0.04	a : 0.02	
c : 0.95	u : 0.04	
c : 0.97	u : 0.02	
u : 0.99	
c : 0.99	
a : 0.98	c : 0.01	
c : 0.95	u : 0.02	g : 0.01	
c : 0.71	u : 0.28	
g : 0.74	a : 0.22	u : 0.02	
c : 0.92	u : 0.07	
u : 0.99	
c : 0.98	u : 0.01	
c : 0.94	u : 0.05	
a : 0.98	u : 0.01	
u : 0.88	c : 0.08	a : 0.02	
g : 0.91	a : 0.05	c : 0.02	
u : 0.94	g : 0.04	c : 0.01	
g : 0.95	u : 0.02	a : 0.01	
c : 0.81	u : 0.11	a : 0.07	
g : 0.78	a : 0.20	c : 0.01	
u : 0.91	c : 0.08	
c : 0.98	g : 0.01	
c : 0.94	u : 0.04	g : 0.01	
c : 0.95	u : 0.02	g : 0.01	
u : 0.99	
c : 0.99	
c : 0.94	u : 0.04	a : 0.01	
c : 0.74	u : 0.25	
g : 0.77	a : 0.22	
a : 0.99	
a : 0.98	g : 0.01	
g : 0.99	
c : 0.99	
u : 0.98	g : 0.01	
g : 0.98	a : 0.01	
c : 0.78	u : 0.20	a : 0.01	
g : 0.62	a : 0.37	
c : 0.57	u : 0.40	g : 0.01	a : 0.01	
g : 0.68	a : 0.24	u : 0.05	c : 0.01	
c : 0.97	u : 0.02	

#score	15495.42857142854
#seq	70
#width	89
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_UTR_m1_run2.nuc.txt

#NT
CCCCACUCCCCCCCAC	chr14:94844177-94844449(-)$1	272	69	85	27.2045
ccccucuccccccucc	chr12:57824511-57824808(-)$1	297	92	108	24.5909
CUCCAGCCCUCCCCCC	chr11:2160222-2160425(-)$1	203	141	157	30.9545
CUCCACUCCGCCCCCC	chr11:2160063-2160267(-)$1	204	152	168	36.4090
CUCCACUCCGCCCCCC	chr11:2159938-2160156(-)$1	218	41	57	36.4090
CUCCAGCCCUCCCCCC	chr11:2160137-2160341(-)$1	204	57	73	30.9545
CUCCAGCCCUCCCCCC	chr11:2160103-2160320(-)$1	217	36	52	30.9545
CUCCAGCCCUCCCCCC	chr11:2160225-2160431(-)$1	206	147	163	30.9545
CUCCACUCCGCCCCCC	chr11:2160091-2160303(-)$1	212	188	204	36.4090
cuccucuucuccuccc	chr20:31611269-31611527(+)$1	258	111	127	24.2499
CUCCAGCCCUCCCCCC	chr11:2160231-2160449(-)$1	218	165	181	30.9545
ccccaccccuccaccc	chr9:139942745-139943032(-)$1	287	23	39	27.0909
CUCCACUCCGCCCCCC	chr11:2160023-2160231(-)$1	208	116	132	36.4090
CUCCACUCCGCCCCCC	chr11:2160075-2160283(-)$1	208	168	184	36.4090
CCCAGCUCAGCCCCCC	chr11:2150857-2151059(-)$1	202	26	42	21.9772
CUCCACUCCGCCCCCC	chr11:2159956-2160165(-)$1	209	50	66	36.4090
CUCCCUUCAGCCCCCA	chr5:149781551-149781843(-)$1	292	98	114	21.4090
CUCCACUCCGCCCCCC	chr11:2160060-2160263(-)$1	203	148	164	36.4090
CUCCACUCCGCCCCCC	chr11:2159984-2160191(-)$1	207	76	92	36.4090
CUCCACUCCGCCCCCC	chr11:2160016-2160223(-)$1	207	108	124	36.4090
cuccucuucuccuccc	chr20:31611327-31611578(+)$1	251	53	69	24.2499
CUCCACUCCGCCCCCC	chr11:2160067-2160275(-)$1	208	160	176	36.4090
cuccacucggccgucc	chr21:40177605-40177939(+)$1	334	165	181	24.0227
CCCCGCCCCUCCCCCC	chr11:64895205-64895481(-)$1	276	251	267	28.1136
ccccaccccuccaccc	chr9:139942832-139943106(-)$1	274	97	113	27.0909
CUCCAGCCCUCCCCCC	chr11:2160193-2160418(-)$1	225	134	150	30.9545
CUccucuccuccccac	chr1:227179486-227179773(-)$1	287	0	16	28.3409
uuccgcuccuccuccc	chr9:132900705-132900988(+)$1	283	74	90	24.1363
CUCCACUCCGCCCCCC	chr11:2160005-2160211(-)$1	206	96	112	36.4090
CUCCACUCCGCCCCCC	chr11:2160031-2160246(-)$1	215	131	147	36.4090
CUCCCCCCCCCCCCAC	chr22:39217852-39218125(-)$1	273	46	62	25.1590
CUCCACUCCGCCCCCC	chr11:2160011-2160214(-)$1	203	99	115	36.4090
cucccucccguccccc	chr11:2159827-2160052(-)$1	225	72	88	24.0227
CUCCACUCCGCCCCCC	chr11:2159991-2160198(-)$1	207	83	99	36.4090
ccccacugcccccucc	chr17:7154815-7155081(-)$1	266	118	134	23.1136
CUCCACUCCGCCCCCC	chr11:2159971-2160184(-)$1	213	69	85	36.4090
CUCCCCUCUGACCUCC	chr1:26144264-26144623(+)$1	359	38	54	20.8409
CUCCACUCCGCCCCCC	chr11:2159965-2160171(-)$1	206	56	72	36.4090
ucccacuccugccccc	chr19:45324522-45324756(+)$1	234	65	81	24.0227
cuucauuccucccucc	chrX:79927754-79928018(-)$1	264	78	94	23.7954
CUCCAGCCCUCCCCCC	chr11:2160251-2160487(-)$1	236	203	219	30.9545
CCCAGCUCAGCCCCCC	chr11:2151011-2151215(-)$1	204	182	198	21.9772
cucccucccguccccc	chr11:2159803-2160027(-)$1	224	47	63	24.0227

#otherMatches

#Struct PSSM
$$ccc[bb!!bb[bb$	chrX:109417508-109417798(+)$1	290	80	96	26.5227
55555ffffff:::::	chr14:94844177-94844449(-)$1	272	69	85	27.2045
^^^^^^^^^^^^^^^^	chr12:57824511-57824808(-)$1	297	92	108	24.5909
qqqqccc:::::::dd	chr11:2160222-2160425(-)$1	203	141	157	30.9545
ooooobb]eeeee:::	chr11:2160063-2160267(-)$1	204	152	168	36.4090
ooooobb]eeeee:::	chr11:2159938-2160156(-)$1	218	41	57	36.4090
::::GGGGGGGLLLCC	chr11:2160137-2160341(-)$1	204	57	73	30.9545
CKKAGGGGGGGLLLCC	chr11:2160103-2160320(-)$1	217	36	52	30.9545
:::::::::::::::c	chr11:2160225-2160431(-)$1	206	147	163	30.9545
ooooobb]eeeee:::	chr11:2160091-2160303(-)$1	212	188	204	36.4090
::::::::::::::::	chr20:31611269-31611527(+)$1	258	111	127	24.2499
qqqqccc::::::::F	chr11:2160231-2160449(-)$1	218	165	181	30.9545
::::::::::::::::	chr9:139942745-139943032(-)$1	287	23	39	27.0909
ooooobb]eeeee:::	chr11:2160023-2160231(-)$1	208	116	132	36.4090
ooooobb]eeeee777	chr11:2160075-2160283(-)$1	208	168	184	36.4090
QQQQQQQQFFFFFFMM	chr11:2150857-2151059(-)$1	202	26	42	21.9772
ooooobb]eeeee:::	chr11:2159956-2160165(-)$1	209	50	66	36.4090
EE{CCCLLLCCC{AKK	chr5:149781551-149781843(-)$1	292	98	114	21.4090
ooooobb]eeeee777	chr11:2160060-2160263(-)$1	203	148	164	36.4090
ooooobb]eeeee:::	chr11:2159984-2160191(-)$1	207	76	92	36.4090
ooooobb]eeeee:::	chr11:2160016-2160223(-)$1	207	108	124	36.4090
::::::::::::::::	chr20:31611327-31611578(+)$1	251	53	69	24.2499
ooooobb]eeeee:cc	chr11:2160067-2160275(-)$1	208	160	176	36.4090
TTTTCCC{JJJJJJJJ	chr21:40177605-40177939(+)$1	334	165	181	24.0227
ff]ggggggg]a]ggg	chr11:64895205-64895481(-)$1	276	251	267	28.1136
::::::::::::::::	chr9:139942832-139943106(-)$1	274	97	113	27.0909
)))))cccqqqqqqqq	chr11:2160193-2160418(-)$1	225	134	150	30.9545
::::::::::::::::	chr1:227179486-227179773(-)$1	287	0	16	28.3409
^^^^bb::::::::::	chr9:132900705-132900988(+)$1	283	74	90	24.1363
ooooobb]eeeee:::	chr11:2160005-2160211(-)$1	206	96	112	36.4090
ooooobb]eeeee777	chr11:2160031-2160246(-)$1	215	131	147	36.4090
2dddda22ccc:::::	chr22:39217852-39218125(-)$1	273	46	62	25.1590
ooooobb]eeeee777	chr11:2160011-2160214(-)$1	203	99	115	36.4090
b::::::::ccc&&&&	chr11:2159827-2160052(-)$1	225	72	88	24.0227
ooooobb]eeeee:::	chr11:2159991-2160198(-)$1	207	83	99	36.4090
::::::::::::::::	chr17:7154815-7155081(-)$1	266	118	134	23.1136
ooooobb]eeeee777	chr11:2159971-2160184(-)$1	213	69	85	36.4090
eee::FFFFFFDDDD{	chr1:26144264-26144623(+)$1	359	38	54	20.8409
ooooobb]eeeee777	chr11:2159965-2160171(-)$1	206	56	72	36.4090
EEEEE:::::bbmmmm	chr19:45324522-45324756(+)$1	234	65	81	24.0227
e:::::::::::::::	chrX:79927754-79928018(-)$1	264	78	94	23.7954
)))))cccqqqqqqqq	chr11:2160251-2160487(-)$1	236	203	219	30.9545
CCC}CCCYYCCC}FFF	chr11:2151011-2151215(-)$1	204	182	198	21.9772
b::::::::ccc&&&&	chr11:2159803-2160027(-)$1	224	47	63	24.0227

#DB
..(((.((..((.((.	chrX:109417508-109417798(+)$1	1	80	96	26.5227
.....)))))).....	chr14:94844177-94844449(-)$1	1	69	85	27.2045
................	chr12:57824511-57824808(-)$1	1	92	108	24.5909
....))).......((	chr11:2160222-2160425(-)$1	1	141	157	30.9545
.....)).)))))...	chr11:2160063-2160267(-)$1	1	152	168	36.4090
.....)).)))))...	chr11:2159938-2160156(-)$1	1	41	57	36.4090
....(((((((...((	chr11:2160137-2160341(-)$1	1	57	73	30.9545
(..((((((((...((	chr11:2160103-2160320(-)$1	1	36	52	30.9545
...............(	chr11:2160225-2160431(-)$1	1	147	163	30.9545
.....)).)))))...	chr11:2160091-2160303(-)$1	1	188	204	36.4090
................	chr20:31611269-31611527(+)$1	1	111	127	24.2499
....)))........)	chr11:2160231-2160449(-)$1	1	165	181	30.9545
................	chr9:139942745-139943032(-)$1	1	23	39	27.0909
.....)).)))))...	chr11:2160023-2160231(-)$1	1	116	132	36.4090
.....)).)))))...	chr11:2160075-2160283(-)$1	1	168	184	36.4090
........((((((..	chr11:2150857-2151059(-)$1	1	26	42	21.9772
.....)).)))))...	chr11:2159956-2160165(-)$1	1	50	66	36.4090
((.(((...(((.(..	chr5:149781551-149781843(-)$1	1	98	114	21.4090
.....)).)))))...	chr11:2160060-2160263(-)$1	1	148	164	36.4090
.....)).)))))...	chr11:2159984-2160191(-)$1	1	76	92	36.4090
.....)).)))))...	chr11:2160016-2160223(-)$1	1	108	124	36.4090
................	chr20:31611327-31611578(+)$1	1	53	69	24.2499
.....)).))))).((	chr11:2160067-2160275(-)$1	1	160	176	36.4090
....(((.((((((((	chr21:40177605-40177939(+)$1	1	165	181	24.0227
)).))))))).).)))	chr11:64895205-64895481(-)$1	1	251	267	28.1136
................	chr9:139942832-139943106(-)$1	1	97	113	27.0909
.....(((........	chr11:2160193-2160418(-)$1	1	134	150	30.9545
................	chr1:227179486-227179773(-)$1	1	0	16	28.3409
....))..........	chr9:132900705-132900988(+)$1	1	74	90	24.1363
.....)).)))))...	chr11:2160005-2160211(-)$1	1	96	112	36.4090
.....)).)))))...	chr11:2160031-2160246(-)$1	1	131	147	36.4090
.)))))..))).....	chr22:39217852-39218125(-)$1	1	46	62	25.1590
.....)).)))))...	chr11:2160011-2160214(-)$1	1	99	115	36.4090
)........(((....	chr11:2159827-2160052(-)$1	1	72	88	24.0227
.....)).)))))...	chr11:2159991-2160198(-)$1	1	83	99	36.4090
................	chr17:7154815-7155081(-)$1	1	118	134	23.1136
.....)).)))))...	chr11:2159971-2160184(-)$1	1	69	85	36.4090
)))..((((((((((.	chr1:26144264-26144623(+)$1	1	38	54	20.8409
.....)).)))))...	chr11:2159965-2160171(-)$1	1	56	72	36.4090
(((((.....((....	chr19:45324522-45324756(+)$1	1	65	81	24.0227
)...............	chrX:79927754-79928018(-)$1	1	78	94	23.7954
.....(((........	chr11:2160251-2160487(-)$1	1	203	219	30.9545
))).)))..))).)))	chr11:2151011-2151215(-)$1	1	182	198	21.9772
)........(((....	chr11:2159803-2160027(-)$1	1	47	63	24.0227

#PSSM
C : 0.70	c : 0.25	u : 0.04	
U : 0.61	u : 0.15	c : 0.13	C : 0.09	
C : 0.68	c : 0.29	u : 0.02	
C : 0.63	c : 0.31	A : 0.04	
A : 0.54	a : 0.15	u : 0.09	G : 0.06	C : 0.06	c : 0.04	g : 0.02	
C : 0.49	c : 0.25	G : 0.15	u : 0.06	U : 0.02	
U : 0.47	u : 0.20	C : 0.20	c : 0.11	
C : 0.68	c : 0.25	u : 0.04	g : 0.02	
C : 0.59	c : 0.29	A : 0.06	g : 0.02	U : 0.02	
G : 0.45	u : 0.20	U : 0.18	g : 0.06	C : 0.04	c : 0.04	
C : 0.65	c : 0.25	u : 0.04	A : 0.02	g : 0.02	
C : 0.68	c : 0.31	
C : 0.68	c : 0.18	u : 0.06	a : 0.04	g : 0.02	
C : 0.65	c : 0.22	u : 0.09	U : 0.02	
C : 0.63	c : 0.29	A : 0.04	a : 0.02	
C : 0.65	c : 0.29	u : 0.02	A : 0.02	

#score	1315.1818181818173
#seq	44
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_transcript_m3_run2.nuc.txt

#NT
ggcggggc	chr17:53499131-53499378(-)$1	247	38	46	15.9230
GCCGCGGC	chr16:28857316-28857527(-)$1	211	175	183	15.9230
GGCGCGGC	chr16:4897664-4897950(+)$1	286	78	86	19.6923
ggcgccgc	chr7:92462650-92462912(-)$1	262	246	254	15.7692
ggcccggc	chr17:43209653-43209968(-)$1	315	164	172	15.9230
CGCGCGGC	chr4:57302323-57302595(+)$1	272	45	53	15.9999
gccgcggc	chr11:46403271-46403531(+)$1	260	67	75	15.9230
GGCGGGGC	chr3:47422424-47422761(+)$1	337	83	91	15.9230
GGGGCGGC	chr1:230202951-230203192(+)$1	241	152	160	15.3076
GGUGCGGC	chr11:1972026-1972276(+)$1	250	168	176	15.1538
GGCUCGGC	chr17:27507229-27507505(-)$1	276	41	49	15.7692
ggcgcggc	chr19:13056609-13056867(+)$1	258	63	71	19.6923
GCCGCGGC	chr17:62207226-62207579(-)$1	353	30	38	15.9230
ggcggggc	chr22:26985916-26986185(-)$1	269	13	21	15.9230
cgcgcggc	chr11:120195909-120196179(+)$1	270	213	221	15.9999
GGCCCGGC	chr10:88281230-88281479(-)$1	249	135	143	15.9230
CGCGCGGC	chr19:16308636-16308940(+)$1	304	67	75	15.9999
GGCGCCGC	chr9:71650597-71650964(+)$1	367	114	122	15.7692
GCCGCGGC	chr3:194991477-194991717(-)$1	240	17	25	15.9230
GGCGCCGC	chr5:157285945-157286224(-)$1	279	92	100	15.7692
GGCGCUGC	chr19:8372932-8373176(-)$1	244	58	66	15.6153
ggcgcggc	chr2:42396400-42396658(+)$1	258	79	87	19.6923
GGCGCGGU	chr1:19577808-19578118(-)$1	310	67	75	15.1538
AGCGCGGC	chr12:121341714-121342056(-)$1	342	7	15	15.6153
CGCGCGGC	chrX:48693720-48693982(-)$1	262	146	154	15.9999
UGCGCGGC	chr17:40120079-40120377(+)$1	298	166	174	15.5384
GGCCCGGC	chr3:50396458-50396704(-)$1	246	18	26	15.9230
GGCGCCGC	chr3:194991587-194991818(-)$1	231	10	18	15.7692
GCCGCGGC	chr16:21610961-21611201(+)$1	240	80	88	15.9230
cgcgcggc	chr3:124774615-124774892(-)$1	277	73	81	15.9999
GGCGCAGC	chrX:133119299-133119525(-)$1	226	117	125	15.4615
GGCGCUGC	chr2:54784926-54785184(+)$1	258	56	64	15.6153
GGCGCGGG	chr1:211751838-211752159(-)$1	321	21	29	15.3846
GGCGGGGC	chr8:38089117-38089410(+)$1	293	134	142	15.9230
GCCGCGGC	chr6:149887500-149887771(+)$1	271	18	26	15.9230
GGGGCGGC	chr12:46766345-46766575(-)$1	230	134	142	15.3076
GGCGCGGC	chr22:50913154-50913436(-)$1	282	169	177	19.6923
GGCCCGGC	chr3:13008915-13009186(-)$1	271	207	215	15.9230
ggcgcggg	chr19:1941230-1941481(+)$1	251	40	48	15.3846
GGCGCGGC	chr18:9334744-9335021(+)$1	277	71	79	19.6923
GAcgcggc	chr13:99229075-99229352(-)$1	277	128	136	15.4615
ggggcggc	chr3:38495614-38495866(+)$1	252	181	189	15.3076
GGCGCUGC	chr9:114659352-114659626(+)$1	274	145	153	15.6153
GGCGCGGC	chr7:32997126-32997457(+)$1	331	300	308	19.6923
GGAGCGGC	chr5:134734649-134734899(-)$1	250	217	225	15.1538
GGCGCGGC	chr6:64345631-64345935(+)$1	304	3	11	19.6923
AGCGCGGC	chrX:150565613-150565886(+)$1	273	110	118	15.6153
GGCGGGGC	chr13:113951610-113951898(+)$1	288	213	221	15.9230
GGCGGGGC	chr12:49524979-49525274(-)$1	295	249	257	15.9230
ggcccggc	chr11:819571-819835(+)$1	264	126	134	15.9230
gccgcggc	chr20:34742441-34742703(+)$1	262	51	59	15.9230
ggcggggc	chr4:22517086-22517397(-)$1	311	9	17	15.9230
GGCGGGGC	chr16:46918618-46918896(+)$1	278	34	42	15.9230
GUCGCGGC	chr1:229406850-229407108(+)$1	258	22	30	15.4615
CGCGCGGC	chr9:124062124-124062353(+)$1	229	90	98	15.9999
GGCUCGGC	chr8:98656659-98656897(+)$1	238	123	131	15.7692
GGCCCGGC	chr8:38126541-38126812(-)$1	271	33	41	15.9230
GGCGCGGC	chr15:73075743-73076028(-)$1	285	6	14	19.6923
GGCGCCGC	chr12:106641382-106641625(-)$1	243	35	43	15.7692
GGCGCGGG	chr11:75479829-75480138(+)$1	309	155	163	15.3846
ggCGCGGC	chr17:79791013-79791241(-)$1	228	176	184	19.6923
GGCUCGGC	chr1:110453398-110453782(+)$1	384	74	82	15.7692
GGCUCGGC	chr14:35515601-35515890(+)$1	289	35	43	15.7692
CGCGCGGC	chr2:152684632-152684875(-)$1	243	5	13	15.9999

#otherMatches

#Struct PSSM
:HHHHHHH	chr3:120067749-120068005(-)$1	256	13	21	15.3846
FFffffff	chr17:53499131-53499378(-)$1	247	38	46	15.9230
[ggggggg	chr16:28857316-28857527(-)$1	211	175	183	15.9230
iia[dddd	chr16:4897664-4897950(+)$1	286	78	86	19.6923
B}FFFFFF	chr7:92462650-92462912(-)$1	262	246	254	15.7692
cJJJJJJJ	chr17:43209653-43209968(-)$1	315	164	172	15.9230
!!cccccc	chr4:57302323-57302595(+)$1	272	45	53	15.9999
Fbb[eeee	chr11:46403271-46403531(+)$1	260	67	75	15.9230
EE{BBddd	chr3:47422424-47422761(+)$1	337	83	91	15.9230
hhhhhhbb	chr1:230202951-230203192(+)$1	241	152	160	15.3076
=======3	chr11:1972026-1972276(+)$1	250	168	176	15.1538
JJJJ{GGG	chr17:27507229-27507505(-)$1	276	41	49	15.7692
========	chr19:13056609-13056867(+)$1	258	63	71	19.6923
cc[iiiii	chr17:62207226-62207579(-)$1	353	30	38	15.9230
HHHHHHHH	chr22:26985916-26986185(-)$1	269	13	21	15.9230
444eeeee	chr11:120195909-120196179(+)$1	270	213	221	15.9999
dddcccnn	chr10:88281230-88281479(-)$1	249	135	143	15.9230
cc!!cccm	chr19:16308636-16308940(+)$1	304	67	75	15.9999
DDDDKKDD	chr9:71650597-71650964(+)$1	367	114	122	15.7692
EEEeeeee	chr3:194991477-194991717(-)$1	240	17	25	15.9230
iiiiifff	chr5:157285945-157286224(-)$1	279	92	100	15.7692
{CCC::bb	chr19:8372932-8373176(-)$1	244	58	66	15.6153
[bblllbb	chr2:42396400-42396658(+)$1	258	79	87	19.6923
::a[dddd	chr1:19577808-19578118(-)$1	310	67	75	15.1538
[ffffff[	chr12:121341714-121342056(-)$1	342	7	15	15.6153
nffffffb	chrX:48693720-48693982(-)$1	262	146	154	15.9999
hhhhhEEE	chr17:40120079-40120377(+)$1	298	166	174	15.5384
ddddrrrr	chr3:50396458-50396704(-)$1	246	18	26	15.9230
:ffffff[	chr3:194991587-194991818(-)$1	231	10	18	15.7692
eeeee]cc	chr16:21610961-21611201(+)$1	240	80	88	15.9230
bb]cccbb	chr3:124774615-124774892(-)$1	277	73	81	15.9999
eeeeeeee	chrX:133119299-133119525(-)$1	226	117	125	15.4615
ffffffmm	chr2:54784926-54785184(+)$1	258	56	64	15.6153
gggggggb	chr1:211751838-211752159(-)$1	321	21	29	15.3846
iiiiiiii	chr8:38089117-38089410(+)$1	293	134	142	15.9230
CC{FFFFF	chr6:149887500-149887771(+)$1	271	18	26	15.9230
IIIIIIII	chr12:46766345-46766575(-)$1	230	134	142	15.3076
bb]hhhhh	chr22:50913154-50913436(-)$1	282	169	177	19.6923
=CCC}GGG	chr3:13008915-13009186(-)$1	271	207	215	15.9230
dddFFFFF	chr19:1941230-1941481(+)$1	251	40	48	15.3846
GGGG}FFF	chr18:9334744-9335021(+)$1	277	71	79	19.6923
qqffffff	chr13:99229075-99229352(-)$1	277	128	136	15.4615
=====ggg	chr3:38495614-38495866(+)$1	252	181	189	15.3076
ddd]====	chr9:114659352-114659626(+)$1	274	145	153	15.6153
IIIIIIII	chr7:32997126-32997457(+)$1	331	300	308	19.6923
uuufffff	chr5:134734649-134734899(-)$1	250	217	225	15.1538
ccceeeee	chr6:64345631-64345935(+)$1	304	3	11	19.6923
&bb[dddd	chrX:150565613-150565886(+)$1	273	110	118	15.6153
bbccc]bb	chr13:113951610-113951898(+)$1	288	213	221	15.9230
GGGGGGJJ	chr12:49524979-49525274(-)$1	295	249	257	15.9230
ddd22ccc	chr11:819571-819835(+)$1	264	126	134	15.9230
fffff[bb	chr20:34742441-34742703(+)$1	262	51	59	15.9230
DEEEEEff	chr4:22517086-22517397(-)$1	311	9	17	15.9230
%%%%%===	chr16:46918618-46918896(+)$1	278	34	42	15.9230
IIIBBCCC	chr1:229406850-229407108(+)$1	258	22	30	15.4615
!ffffffl	chr9:124062124-124062353(+)$1	229	90	98	15.9999
fff####d	chr8:98656659-98656897(+)$1	238	123	131	15.7692
gg]bbCCC	chr8:38126541-38126812(-)$1	271	33	41	15.9230
EEEEEccc	chr15:73075743-73076028(-)$1	285	6	14	19.6923
oooeeeee	chr12:106641382-106641625(-)$1	243	35	43	15.7692
gggggFFF	chr11:75479829-75480138(+)$1	309	155	163	15.3846
ii[bbooo	chr17:79791013-79791241(-)$1	228	176	184	19.6923
dddd:hhh	chr1:110453398-110453782(+)$1	384	74	82	15.7692
bbdddd[d	chr14:35515601-35515890(+)$1	289	35	43	15.7692
Fbb[ccc[	chr2:152684632-152684875(-)$1	243	5	13	15.9999

#DB
.(((((((	chr3:120067749-120068005(-)$1	1	13	21	15.3846
((((((((	chr17:53499131-53499378(-)$1	1	38	46	15.9230
.(((((((	chr16:28857316-28857527(-)$1	1	175	183	15.9230
(((.((((	chr16:4897664-4897950(+)$1	1	78	86	19.6923
).))))))	chr7:92462650-92462912(-)$1	1	246	254	15.7692
))))))))	chr17:43209653-43209968(-)$1	1	164	172	15.9230
..((((((	chr4:57302323-57302595(+)$1	1	45	53	15.9999
(((.((((	chr11:46403271-46403531(+)$1	1	67	75	15.9230
((.(((((	chr3:47422424-47422761(+)$1	1	83	91	15.9230
))))))))	chr1:230202951-230203192(+)$1	1	152	160	15.3076
))))))).	chr11:1972026-1972276(+)$1	1	168	176	15.1538
((((.(((	chr17:27507229-27507505(-)$1	1	41	49	15.7692
((((((((	chr19:13056609-13056867(+)$1	1	63	71	19.6923
((.(((((	chr17:62207226-62207579(-)$1	1	30	38	15.9230
((((((((	chr22:26985916-26986185(-)$1	1	13	21	15.9230
...)))))	chr11:120195909-120196179(+)$1	1	213	221	15.9999
((((((..	chr10:88281230-88281479(-)$1	1	135	143	15.9230
((..(((.	chr19:16308636-16308940(+)$1	1	67	75	15.9999
((((..((	chr9:71650597-71650964(+)$1	1	114	122	15.7692
((((((((	chr3:194991477-194991717(-)$1	1	17	25	15.9230
))))))))	chr5:157285945-157286224(-)$1	1	92	100	15.7692
.(((..((	chr19:8372932-8373176(-)$1	1	58	66	15.6153
.((...))	chr2:42396400-42396658(+)$1	1	79	87	19.6923
..(.((((	chr1:19577808-19578118(-)$1	1	67	75	15.1538
.((((((.	chr12:121341714-121342056(-)$1	1	7	15	15.6153
.))))))(	chrX:48693720-48693982(-)$1	1	146	154	15.9999
))))))))	chr17:40120079-40120377(+)$1	1	166	174	15.5384
((((....	chr3:50396458-50396704(-)$1	1	18	26	15.9230
.((((((.	chr3:194991587-194991818(-)$1	1	10	18	15.7692
))))).))	chr16:21610961-21611201(+)$1	1	80	88	15.9230
)).)))))	chr3:124774615-124774892(-)$1	1	73	81	15.9999
))))))))	chrX:133119299-133119525(-)$1	1	117	125	15.4615
((((((..	chr2:54784926-54785184(+)$1	1	56	64	15.6153
((((((((	chr1:211751838-211752159(-)$1	1	21	29	15.3846
((((((((	chr8:38089117-38089410(+)$1	1	134	142	15.9230
((.(((((	chr6:149887500-149887771(+)$1	1	18	26	15.9230
))))))))	chr12:46766345-46766575(-)$1	1	134	142	15.3076
)).)))))	chr22:50913154-50913436(-)$1	1	169	177	19.6923
)))).)))	chr3:13008915-13009186(-)$1	1	207	215	15.9230
))))))))	chr19:1941230-1941481(+)$1	1	40	48	15.3846
)))).)))	chr18:9334744-9335021(+)$1	1	71	79	19.6923
..))))))	chr13:99229075-99229352(-)$1	1	128	136	15.4615
)))))(((	chr3:38495614-38495866(+)$1	1	181	189	15.3076
))).))))	chr9:114659352-114659626(+)$1	1	145	153	15.6153
))))))))	chr7:32997126-32997457(+)$1	1	300	308	19.6923
...)))))	chr5:134734649-134734899(-)$1	1	217	225	15.1538
((((((((	chr6:64345631-64345935(+)$1	1	3	11	19.6923
.((.((((	chrX:150565613-150565886(+)$1	1	110	118	15.6153
))))).))	chr13:113951610-113951898(+)$1	1	213	221	15.9230
))))))))	chr12:49524979-49525274(-)$1	1	249	257	15.9230
)))..)))	chr11:819571-819835(+)$1	1	126	134	15.9230
(((((.((	chr20:34742441-34742703(+)$1	1	51	59	15.9230
((((((((	chr4:22517086-22517397(-)$1	1	9	17	15.9230
.....(((	chr16:46918618-46918896(+)$1	1	34	42	15.9230
((((((((	chr1:229406850-229407108(+)$1	1	22	30	15.4615
.((((((.	chr9:124062124-124062353(+)$1	1	90	98	15.9999
(((....(	chr8:98656659-98656897(+)$1	1	123	131	15.7692
)).))(((	chr8:38126541-38126812(-)$1	1	33	41	15.9230
((((((((	chr15:73075743-73076028(-)$1	1	6	14	19.6923
...)))))	chr12:106641382-106641625(-)$1	1	35	43	15.7692
)))))(((	chr11:75479829-75480138(+)$1	1	155	163	15.3846
((.((...	chr17:79791013-79791241(-)$1	1	176	184	19.6923
)))).(((	chr1:110453398-110453782(+)$1	1	74	82	15.7692
((((((.(	chr14:35515601-35515890(+)$1	1	35	43	15.7692
(((.(((.	chr2:152684632-152684875(-)$1	1	5	13	15.9999

#PSSM
G : 0.64	g : 0.20	C : 0.07	c : 0.03	A : 0.03	U : 0.01	
G : 0.66	g : 0.20	C : 0.07	c : 0.03	A : 0.01	U : 0.01	
C : 0.70	c : 0.21	G : 0.03	U : 0.01	g : 0.01	A : 0.01	
G : 0.64	g : 0.20	U : 0.06	C : 0.06	c : 0.03	
C : 0.69	c : 0.18	G : 0.07	g : 0.04	
G : 0.64	g : 0.21	C : 0.06	U : 0.04	c : 0.01	A : 0.01	
G : 0.76	g : 0.23	
C : 0.70	c : 0.21	G : 0.04	U : 0.01	g : 0.01	

#score	1058.4615384615377
#seq	65
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_UTR_m1_run1.nuc.txt

#NT
UCAGUA	chr11:5289506-5289732(-)$1	226	144	150	9.7999
UCAUUG	chr2:85808733-85808984(+)$1	251	71	77	9.7999
UGAGUG	chr14:23389972-23390231(-)$1	259	43	49	9.8666
UCAGGG	chr11:67165684-67165909(-)$1	225	140	146	10.0666
CCAGUG	chr2:241070329-241070605(-)$1	276	131	137	10.5333
UCAUUG	chr19:39967069-39967309(+)$1	240	128	134	9.7999
UCAGUA	chr1:16576814-16577069(-)$1	255	243	249	9.7999
UCAGUG	chr12:120878350-120878626(+)$1	276	254	260	13.9999
UCAGUG	chr10:105148786-105149023(-)$1	237	10	16	13.9999
UCUGUG	chr7:99751585-99751834(+)$1	249	48	54	10.4666
UCAGUG	chr2:86371131-86371376(-)$1	245	156	162	13.9999
UCUGUG	chr19:6413763-6414016(-)$1	253	78	84	10.4666
UCUGUG	chr19:17389852-17390189(+)$1	337	192	198	10.4666
UCAGGG	chr16:29822127-29822363(+)$1	236	35	41	10.0666
GCAGUG	chr17:76987733-76988005(-)$1	272	74	80	10.1999
UCAGUA	chr11:75283232-75283489(+)$1	257	189	195	9.7999
UCAGUU	chr5:114949157-114949403(-)$1	246	21	27	9.6666
UCUGUG	chr1:161183984-161184237(+)$1	253	40	46	10.4666
CCAGUG	chr17:18148218-18148568(-)$1	350	222	228	10.5333
UCAUUG	chr10:73993411-73993658(+)$1	247	120	126	9.7999
UCAGGG	chr10:73576674-73576904(-)$1	230	122	128	10.0666
ucagug	chr15:44063588-44063825(+)$1	237	220	226	13.9999
UCAGAG	chr19:13063874-13064129(+)$1	255	217	223	10.1333
CCAGUG	chr19:1279050-1279313(+)$1	263	225	231	10.5333
ACAGUG	chr3:47455174-47455463(-)$1	289	1	7	10.2666
UCAGUG	chr1:12091681-12091974(+)$1	293	136	142	13.9999
UCAGUG	chr17:73774363-73774609(-)$1	246	95	101	13.9999
UCAUUG	chr1:40888685-40888958(+)$1	273	44	50	9.7999
UCAGUG	chr9:33039009-33039266(+)$1	257	82	88	13.9999
GCAGUG	chr7:44161558-44161808(-)$1	250	26	32	10.1999
UCAGUG	chr8:11696293-11696540(+)$1	247	76	82	13.9999
UCUGUG	chr6:37142983-37143225(+)$1	242	2	8	10.4666
UCAGUG	chr12:56295197-56295480(-)$1	283	53	59	13.9999
CCAGUG	chr2:85808955-85809196(+)$1	241	166	172	10.5333
UCAGAG	chr10:5807789-5808045(-)$1	256	17	23	10.1333
UCUGUG	chr11:64789318-64789567(+)$1	249	154	160	10.4666
UGAGUG	chr21:27096758-27097057(-)$1	299	244	250	9.8666
UCAGGG	chr8:101715431-101715636(-)$1	205	54	60	10.0666
GCAGUG	chr20:5095540-5095782(-)$1	242	188	194	10.1999
ACAGUG	chr12:56553748-56553985(+)$1	237	60	66	10.2666
UCAGAG	chr18:3256097-3256312(+)$1	215	78	84	10.1333
CCAGUG	chr19:47774906-47775212(+)$1	306	158	164	10.5333
UCAGUC	chr17:39847735-39847987(+)$1	252	1	7	9.6666
UCAGUG	chr2:97525583-97525824(-)$1	241	130	136	13.9999
UCAGUG	chr9:75785152-75785393(+)$1	241	204	210	13.9999
UCUGUG	chrX:152961467-152961696(+)$1	229	215	221	10.4666
UCUGUG	chr20:57025184-57025452(+)$1	268	140	146	10.4666
UCagug	chr16:29708772-29709054(+)$1	282	38	44	13.9999
UAAGUG	chr14:68117720-68117979(+)$1	259	219	225	9.7999
UCAGUC	chr11:14526395-14526635(-)$1	240	20	26	9.6666
UGAGUG	chr11:809909-810117(+)$1	208	131	137	9.8666
UCUGUG	chr17:79826311-79826568(-)$1	257	94	100	10.4666
UAAGUG	chr1:153963941-153964156(+)$1	215	42	48	9.7999
UCAGUG	chr19:12778846-12779122(-)$1	276	254	260	13.9999
UUAGUG	chr8:109260797-109261020(-)$1	223	56	62	9.7333
UCAGUU	chr2:74185888-74186141(+)$1	253	201	207	9.6666
UCUGUG	chr6:34393707-34393943(-)$1	236	142	148	10.4666
UCAUUG	chr17:73163822-73164049(-)$1	227	55	61	9.7999
UUAGUG	chr12:54066258-54066500(-)$1	242	27	33	9.7333
UCAGGG	chr19:49999594-49999828(+)$1	234	181	187	10.0666
UCUGUG	chr12:6979751-6980008(+)$1	257	189	195	10.4666
UGAGUG	chr16:8948715-8948949(-)$1	234	198	204	9.8666
CCAGUG	chr7:99751476-99751735(+)$1	259	9	15	10.5333
UCAGAG	chr1:154248085-154248384(+)$1	299	104	110	10.1333
UCAGAG	chr3:50367407-50367740(-)$1	333	146	152	10.1333
UAAGUG	chr6:37448907-37449179(+)$1	272	16	22	9.7999
UCAUUG	chr11:46765325-46765618(-)$1	293	180	186	9.7999
CCAGUG	chr11:46405097-46405307(+)$1	210	33	39	10.5333
CCAGUG	chr20:30389350-30389589(+)$1	239	75	81	10.5333
UCAGAG	chr7:75957850-75958079(-)$1	229	85	91	10.1333
UCAGUA	chr20:57486084-57486326(+)$1	242	38	44	9.7999
ACAGUG	chr3:197680803-197681054(+)$1	251	144	150	10.2666
UCAGUG	chr1:1716651-1716889(-)$1	238	73	79	13.9999
UCAGUG	chr22:38062685-38062931(+)$1	246	93	99	13.9999

#otherMatches

#Struct PSSM
obb]cc	chr22:50961563-50961821(+)$1	258	112	118	10.2666
ccceee	chr11:5289506-5289732(-)$1	226	144	150	9.7999
:bb[bb	chr2:85808733-85808984(+)$1	251	71	77	9.7999
gggggg	chr14:23389972-23390231(-)$1	259	43	49	9.8666
ddd[cc	chr11:67165684-67165909(-)$1	225	140	146	10.0666
dccc]e	chr2:241070329-241070605(-)$1	276	131	137	10.5333
ddcccq	chr19:39967069-39967309(+)$1	240	128	134	9.7999
ooccc:	chr1:16576814-16577069(-)$1	255	243	249	9.7999
f::FFF	chr12:120878350-120878626(+)$1	276	254	260	13.9999
GLLLJJ	chr10:105148786-105149023(-)$1	237	10	16	13.9999
eeoooo	chr7:99751585-99751834(+)$1	249	48	54	10.4666
mmmddd	chr2:86371131-86371376(-)$1	245	156	162	13.9999
GGGGGQ	chr19:6413763-6414016(-)$1	253	78	84	10.4666
__IIII	chr19:17389852-17390189(+)$1	337	192	198	10.4666
ffffff	chr16:29822127-29822363(+)$1	236	35	41	10.0666
hhhhhh	chr17:76987733-76988005(-)$1	272	74	80	10.1999
f!!bb[	chr11:75283232-75283489(+)$1	257	189	195	9.7999
IIIIII	chr5:114949157-114949403(-)$1	246	21	27	9.6666
777bb]	chr1:161183984-161184237(+)$1	253	40	46	10.4666
]a22cc	chr17:18148218-18148568(-)$1	350	222	228	10.5333
nnnnnb	chr10:73993411-73993658(+)$1	247	120	126	9.7999
mmdddd	chr10:73576674-73576904(-)$1	230	122	128	10.0666
ziiiii	chr15:44063588-44063825(+)$1	237	220	226	13.9999
cooooo	chr19:13063874-13064129(+)$1	255	217	223	10.1333
fffffc	chr19:1279050-1279313(+)$1	263	225	231	10.5333
:CCC{G	chr3:47455174-47455463(-)$1	289	1	7	10.2666
qqqqqq	chr1:12091681-12091974(+)$1	293	136	142	13.9999
c]eeee	chr17:73774363-73774609(-)$1	246	95	101	13.9999
55555c	chr1:40888685-40888958(+)$1	273	44	50	9.7999
2ccc]a	chr9:33039009-33039266(+)$1	257	82	88	13.9999
33bb]c	chr7:44161558-44161808(-)$1	250	26	32	10.1999
IIIDDD	chr8:11696293-11696540(+)$1	247	76	82	13.9999
:::::D	chr6:37142983-37143225(+)$1	242	2	8	10.4666
fffff!	chr12:56295197-56295480(-)$1	283	53	59	13.9999
ccmmmm	chr2:85808955-85809196(+)$1	241	166	172	10.5333
gggggg	chr10:5807789-5808045(-)$1	256	17	23	10.1333
333eee	chr11:64789318-64789567(+)$1	249	154	160	10.4666
BBBB}F	chr21:27096758-27097057(-)$1	299	244	250	9.8666
5555ff	chr8:101715431-101715636(-)$1	205	54	60	10.0666
eellle	chr20:5095540-5095782(-)$1	242	188	194	10.1999
:::::C	chr12:56553748-56553985(+)$1	237	60	66	10.2666
======	chr18:3256097-3256312(+)$1	215	78	84	10.1333
:::bb[	chr19:47774906-47775212(+)$1	306	158	164	10.5333
::::::	chr17:39847735-39847987(+)$1	252	1	7	9.6666
!!dddd	chr2:97525583-97525824(-)$1	241	130	136	13.9999
:::GGG	chr9:75785152-75785393(+)$1	241	204	210	13.9999
ffff:F	chrX:152961467-152961696(+)$1	229	215	221	10.4666
nnnddd	chr20:57025184-57025452(+)$1	268	140	146	10.4666
ffbb]e	chr16:29708772-29709054(+)$1	282	38	44	13.9999
GGFFFF	chr14:68117720-68117979(+)$1	259	219	225	9.7999
nnnncc	chr11:14526395-14526635(-)$1	240	20	26	9.6666
]ccc]f	chr11:809909-810117(+)$1	208	131	137	9.8666
ggg333	chr17:79826311-79826568(-)$1	257	94	100	10.4666
e%%%%%	chr1:153963941-153964156(+)$1	215	42	48	9.7999
JJJJEE	chr19:12778846-12779122(-)$1	276	254	260	13.9999
dmmmmd	chr8:109260797-109261020(-)$1	223	56	62	9.7333
EEEEYY	chr2:74185888-74186141(+)$1	253	201	207	9.6666
iiiiii	chr6:34393707-34393943(-)$1	236	142	148	10.4666
5bb22c	chr17:73163822-73164049(-)$1	227	55	61	9.7999
:::ccc	chr12:54066258-54066500(-)$1	242	27	33	9.7333
YYFFFF	chr19:49999594-49999828(+)$1	234	181	187	10.0666
ee333b	chr12:6979751-6980008(+)$1	257	189	195	10.4666
qqeeee	chr16:8948715-8948949(-)$1	234	198	204	9.8666
ffffoo	chr7:99751476-99751735(+)$1	259	9	15	10.5333
ttteee	chr1:154248085-154248384(+)$1	299	104	110	10.1333
g]ccc4	chr3:50367407-50367740(-)$1	333	146	152	10.1333
eeeecc	chr6:37448907-37449179(+)$1	272	16	22	9.7999
CCCGGG	chr11:46765325-46765618(-)$1	293	180	186	9.7999
#ccc[b	chr11:46405097-46405307(+)$1	210	33	39	10.5333
======	chr20:30389350-30389589(+)$1	239	75	81	10.5333
ff::::	chr7:75957850-75958079(-)$1	229	85	91	10.1333
e:::::	chr20:57486084-57486326(+)$1	242	38	44	9.7999
mbb22c	chr3:197680803-197681054(+)$1	251	144	150	10.2666
2bbddd	chr1:1716651-1716889(-)$1	238	73	79	13.9999
{CCC{C	chr22:38062685-38062931(+)$1	246	93	99	13.9999

#DB
.)).))	chr22:50961563-50961821(+)$1	1	112	118	10.2666
)))(((	chr11:5289506-5289732(-)$1	1	144	150	9.7999
.((.((	chr2:85808733-85808984(+)$1	1	71	77	9.7999
((((((	chr14:23389972-23390231(-)$1	1	43	49	9.8666
(((.((	chr11:67165684-67165909(-)$1	1	140	146	10.0666
)))).)	chr2:241070329-241070605(-)$1	1	131	137	10.5333
(((((.	chr19:39967069-39967309(+)$1	1	128	134	9.7999
..))).	chr1:16576814-16577069(-)$1	1	243	249	9.7999
)..)))	chr12:120878350-120878626(+)$1	1	254	260	13.9999
(...((	chr10:105148786-105149023(-)$1	1	10	16	13.9999
((....	chr7:99751585-99751834(+)$1	1	48	54	10.4666
...)))	chr2:86371131-86371376(-)$1	1	156	162	13.9999
(((((.	chr19:6413763-6414016(-)$1	1	78	84	10.4666
..))))	chr19:17389852-17390189(+)$1	1	192	198	10.4666
))))))	chr16:29822127-29822363(+)$1	1	35	41	10.0666
((((((	chr17:76987733-76988005(-)$1	1	74	80	10.1999
(..((.	chr11:75283232-75283489(+)$1	1	189	195	9.7999
((((((	chr5:114949157-114949403(-)$1	1	21	27	9.6666
...)).	chr1:161183984-161184237(+)$1	1	40	46	10.4666
.)..))	chr17:18148218-18148568(-)$1	1	222	228	10.5333
.....)	chr10:73993411-73993658(+)$1	1	120	126	9.7999
..))))	chr10:73576674-73576904(-)$1	1	122	128	10.0666
.)))))	chr15:44063588-44063825(+)$1	1	220	226	13.9999
(.....	chr19:13063874-13064129(+)$1	1	217	223	10.1333
))))))	chr19:1279050-1279313(+)$1	1	225	231	10.5333
.(((.(	chr3:47455174-47455463(-)$1	1	1	7	10.2666
......	chr1:12091681-12091974(+)$1	1	136	142	13.9999
).))))	chr17:73774363-73774609(-)$1	1	95	101	13.9999
.....)	chr1:40888685-40888958(+)$1	1	44	50	9.7999
.))).)	chr9:33039009-33039266(+)$1	1	82	88	13.9999
..)).)	chr7:44161558-44161808(-)$1	1	26	32	10.1999
((((((	chr8:11696293-11696540(+)$1	1	76	82	13.9999
.....(	chr6:37142983-37143225(+)$1	1	2	8	10.4666
(((((.	chr12:56295197-56295480(-)$1	1	53	59	13.9999
((....	chr2:85808955-85809196(+)$1	1	166	172	10.5333
((((((	chr10:5807789-5808045(-)$1	1	17	23	10.1333
...)))	chr11:64789318-64789567(+)$1	1	154	160	10.4666
)))).)	chr21:27096758-27097057(-)$1	1	244	250	9.8666
....))	chr8:101715431-101715636(-)$1	1	54	60	10.0666
((...)	chr20:5095540-5095782(-)$1	1	188	194	10.1999
.....(	chr12:56553748-56553985(+)$1	1	60	66	10.2666
((((((	chr18:3256097-3256312(+)$1	1	78	84	10.1333
...((.	chr19:47774906-47775212(+)$1	1	158	164	10.5333
......	chr17:39847735-39847987(+)$1	1	1	7	9.6666
..((((	chr2:97525583-97525824(-)$1	1	130	136	13.9999
...)))	chr9:75785152-75785393(+)$1	1	204	210	13.9999
)))).)	chrX:152961467-152961696(+)$1	1	215	221	10.4666
...)))	chr20:57025184-57025452(+)$1	1	140	146	10.4666
)))).)	chr16:29708772-29709054(+)$1	1	38	44	13.9999
))))))	chr14:68117720-68117979(+)$1	1	219	225	9.7999
....))	chr11:14526395-14526635(-)$1	1	20	26	9.6666
.))).)	chr11:809909-810117(+)$1	1	131	137	9.8666
)))...	chr17:79826311-79826568(-)$1	1	94	100	10.4666
(.....	chr1:153963941-153964156(+)$1	1	42	48	9.7999
))))))	chr19:12778846-12779122(-)$1	1	254	260	13.9999
(....)	chr8:109260797-109261020(-)$1	1	56	62	9.7333
))))..	chr2:74185888-74186141(+)$1	1	201	207	9.6666
))))))	chr6:34393707-34393943(-)$1	1	142	148	10.4666
.))..)	chr17:73163822-73164049(-)$1	1	55	61	9.7999
...(((	chr12:54066258-54066500(-)$1	1	27	33	9.7333
..))))	chr19:49999594-49999828(+)$1	1	181	187	10.0666
))...)	chr12:6979751-6980008(+)$1	1	189	195	10.4666
..))))	chr16:8948715-8948949(-)$1	1	198	204	9.8666
((((..	chr7:99751476-99751735(+)$1	1	9	15	10.5333
...)))	chr1:154248085-154248384(+)$1	1	104	110	10.1333
).))).	chr3:50367407-50367740(-)$1	1	146	152	10.1333
((((((	chr6:37448907-37449179(+)$1	1	16	22	9.7999
))))))	chr11:46765325-46765618(-)$1	1	180	186	9.7999
.(((.(	chr11:46405097-46405307(+)$1	1	33	39	10.5333
((((((	chr20:30389350-30389589(+)$1	1	75	81	10.5333
))....	chr7:75957850-75958079(-)$1	1	85	91	10.1333
).....	chr20:57486084-57486326(+)$1	1	38	44	9.7999
.))..)	chr3:197680803-197681054(+)$1	1	144	150	10.2666
.))(((	chr1:1716651-1716889(-)$1	1	73	79	13.9999
.(((.(	chr22:38062685-38062931(+)$1	1	93	99	13.9999

#PSSM
U : 0.78	C : 0.10	A : 0.05	G : 0.04	u : 0.01	
C : 0.86	G : 0.05	A : 0.04	U : 0.02	c : 0.01	
A : 0.82	U : 0.14	a : 0.02	
G : 0.89	U : 0.08	g : 0.02	
U : 0.82	A : 0.08	G : 0.06	u : 0.02	
G : 0.86	A : 0.05	U : 0.02	g : 0.02	C : 0.02	

#score	817.199999999999
#seq	75
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_CDS_m2_run1.nuc.txt

#NT
UCUU	chr5:179249760-179249994(+)$1	234	43	47	11.9999
UCUU	chr7:6509280-6509486(-)$1	206	5	9	11.9999
UCUU	chr3:197598169-197598445(+)$1	276	18	22	11.9999
UCUU	chr1:236703866-236704131(+)$1	265	142	146	11.9999
UCUU	chr3:138409724-138409958(-)$1	234	33	37	11.9999
UCUU	chrX:13337534-13337781(+)$1	247	189	193	11.9999
UCUU	chr1:78187509-78187776(-)$1	267	82	86	11.9999
UCUU	chr6:80721438-80721746(+)$1	308	119	123	11.9999
UCUU	chr18:260123-260386(-)$1	263	4	8	11.9999
ucuu	chr1:6655377-6655622(-)$1	245	209	213	11.9999
UCUU	chr17:76220517-76220728(+)$1	211	95	99	11.9999
UCUU	chr17:57746045-57746301(+)$1	256	84	88	11.9999
UCUU	chr2:187367237-187367534(+)$1	297	88	92	11.9999
UCUU	chr12:98941438-98941699(+)$1	261	167	171	11.9999
UCUU	chr10:103572497-103572727(-)$1	230	59	63	11.9999
ucuu	chr18:12986729-12986968(+)$1	239	29	33	11.9999
UCUU	chr3:141632508-141632768(+)$1	260	151	155	11.9999
UCUU	chr1:165621147-165621372(+)$1	225	49	53	11.9999
UCUU	chr1:154317868-154318130(+)$1	262	71	75	11.9999
UCUU	chr2:131904236-131904487(+)$1	251	102	106	11.9999
UCUU	chr11:9309880-9310172(-)$1	292	37	41	11.9999
UCUU	chr10:126086531-126086768(-)$1	237	62	66	11.9999
UCUU	chr7:6513713-6513933(-)$1	220	54	58	11.9999
UCUU	chr17:48827976-48828194(+)$1	218	193	197	11.9999
UCUU	chr11:66391928-66392228(+)$1	300	44	48	11.9999
UCUU	chr4:166261411-166261638(+)$1	227	11	15	11.9999
UCUU	chr10:98287740-98288010(-)$1	270	56	60	11.9999
UCUU	chr19:1468333-1468614(-)$1	281	33	37	11.9999
UCUU	chr14:54898751-54898991(-)$1	240	84	88	11.9999
UCUU	chr7:128633745-128633985(-)$1	240	93	97	11.9999
UCUU	chr19:1469340-1469652(-)$1	312	218	222	11.9999
UCUU	chr5:10403520-10403739(+)$1	219	95	99	11.9999
UCUU	chr14:23057770-23057990(-)$1	220	89	93	11.9999
UCUU	chr1:165623421-165623663(+)$1	242	56	60	11.9999
UCUU	chr11:64540866-64541092(-)$1	226	23	27	11.9999
UCUU	chr1:53333195-53333443(+)$1	248	125	129	11.9999
ucuu	chr22:50016768-50017011(-)$1	243	186	190	11.9999
UCUU	chr17:46972960-46973227(+)$1	267	79	83	11.9999
UCUU	chr1:155883834-155884092(-)$1	258	215	219	11.9999
UCUU	chr8:124221551-124221798(+)$1	247	36	40	11.9999
UCUU	chr17:48828136-48828389(+)$1	253	33	37	11.9999
UCUU	chr12:123463444-123463698(+)$1	254	72	76	11.9999
UCUU	chr17:48827994-48828251(+)$1	257	175	179	11.9999
UCUU	chr9:71833198-71833613(+)$1	415	193	197	11.9999
UCUU	chr5:10403543-10403770(+)$1	227	72	76	11.9999
UCUU	chr17:38990862-38991177(+)$1	315	69	73	11.9999
UCUU	chr9:86584165-86584394(-)$1	229	24	28	11.9999
UCUU	chr20:33645222-33645464(-)$1	242	92	96	11.9999
UCUU	chr4:2009581-2009885(-)$1	304	91	95	11.9999
UCUU	chr5:158589880-158590130(-)$1	250	32	36	11.9999
UCUU	chr17:60087728-60087988(-)$1	260	134	138	11.9999
UCUU	chr16:18845986-18846333(-)$1	347	70	74	11.9999
UCUU	chr6:136596699-136597004(-)$1	305	6	10	11.9999
UCUU	chr11:43423020-43423314(+)$1	294	62	66	11.9999
UCUU	chr3:52723120-52723414(+)$1	294	19	23	11.9999
UCUU	chr7:6509125-6509347(-)$1	222	114	118	11.9999
UCUU	chr2:181925423-181925640(+)$1	217	125	129	11.9999
UCUU	chr10:121336429-121336705(-)$1	276	136	140	11.9999
UCUU	chrX:118923853-118924074(-)$1	221	36	40	11.9999
UCUU	chr17:56166515-56166767(+)$1	252	108	112	11.9999
UCUU	chr1:46827322-46827580(+)$1	258	101	105	11.9999
UCUU	chr1:25687048-25687322(+)$1	274	10	14	11.9999
UCUU	chr5:10400817-10401059(+)$1	242	226	230	11.9999
UCUU	chr4:17825289-17825559(+)$1	270	10	14	11.9999
UCUU	chr11:70265880-70266134(+)$1	254	85	89	11.9999
UCUU	chr17:76220528-76220754(+)$1	226	84	88	11.9999
UCUU	chr3:183705385-183705637(-)$1	252	6	10	11.9999
UCUU	chr5:126860376-126860629(+)$1	253	99	103	11.9999
UCUU	chr2:32530577-32530828(+)$1	251	54	58	11.9999
UCUU	chr16:84214609-84214860(-)$1	251	60	64	11.9999
UCUU	chr9:79890454-79890821(+)$1	367	8	12	11.9999
UCUU	chr17:8370441-8370690(+)$1	249	100	104	11.9999
UCUU	chr12:102107794-102108081(+)$1	287	46	50	11.9999
UCUU	chr12:123060342-123060628(+)$1	286	84	88	11.9999
UCUU	chr11:6569132-6569401(+)$1	269	1	5	11.9999
UCUU	chr7:16816601-16816851(+)$1	250	110	114	11.9999
UCUU	chr5:137524540-137524839(-)$1	299	155	159	11.9999

#otherMatches

#Struct PSSM
DDD=	chr12:111160076-111160352(-)$1	276	54	58	11.9999
mmmg	chr5:179249760-179249994(+)$1	234	43	47	11.9999
::gg	chr7:6509280-6509486(-)$1	206	5	9	11.9999
:hhh	chr3:197598169-197598445(+)$1	276	18	22	11.9999
GGGG	chr1:236703866-236704131(+)$1	265	142	146	11.9999
eeee	chr3:138409724-138409958(-)$1	234	33	37	11.9999
ffff	chrX:13337534-13337781(+)$1	247	189	193	11.9999
|FFF	chr1:78187509-78187776(-)$1	267	82	86	11.9999
ffff	chr6:80721438-80721746(+)$1	308	119	123	11.9999
:JJJ	chr18:260123-260386(-)$1	263	4	8	11.9999
cc##	chr1:6655377-6655622(-)$1	245	209	213	11.9999
ffll	chr17:76220517-76220728(+)$1	211	95	99	11.9999
oooo	chr17:57746045-57746301(+)$1	256	84	88	11.9999
gggg	chr2:187367237-187367534(+)$1	297	88	92	11.9999
gggv	chr12:98941438-98941699(+)$1	261	167	171	11.9999
dd!!	chr10:103572497-103572727(-)$1	230	59	63	11.9999
nnnn	chr18:12986729-12986968(+)$1	239	29	33	11.9999
7777	chr3:141632508-141632768(+)$1	260	151	155	11.9999
JJJJ	chr1:165621147-165621372(+)$1	225	49	53	11.9999
mmee	chr1:154317868-154318130(+)$1	262	71	75	11.9999
uuuu	chr2:131904236-131904487(+)$1	251	102	106	11.9999
FFFF	chr11:9309880-9310172(-)$1	292	37	41	11.9999
qqii	chr10:126086531-126086768(-)$1	237	62	66	11.9999
UUUU	chr7:6513713-6513933(-)$1	220	54	58	11.9999
fffe	chr17:48827976-48828194(+)$1	218	193	197	11.9999
::::	chr11:66391928-66392228(+)$1	300	44	48	11.9999
IIII	chr4:166261411-166261638(+)$1	227	11	15	11.9999
iiii	chr10:98287740-98288010(-)$1	270	56	60	11.9999
ffff	chr19:1468333-1468614(-)$1	281	33	37	11.9999
qqqq	chr14:54898751-54898991(-)$1	240	84	88	11.9999
"ccc	chr7:128633745-128633985(-)$1	240	93	97	11.9999
iiii	chr19:1469340-1469652(-)$1	312	218	222	11.9999
EEEE	chr5:10403520-10403739(+)$1	219	95	99	11.9999
>>>>	chr14:23057770-23057990(-)$1	220	89	93	11.9999
====	chr1:165623421-165623663(+)$1	242	56	60	11.9999
pppp	chr11:64540866-64541092(-)$1	226	23	27	11.9999
2ddd	chr1:53333195-53333443(+)$1	248	125	129	11.9999
::::	chr22:50016768-50017011(-)$1	243	186	190	11.9999
FFF:	chr17:46972960-46973227(+)$1	267	79	83	11.9999
HHHH	chr1:155883834-155884092(-)$1	258	215	219	11.9999
333c	chr8:124221551-124221798(+)$1	247	36	40	11.9999
CNNN	chr17:48828136-48828389(+)$1	253	33	37	11.9999
$$ee	chr12:123463444-123463698(+)$1	254	72	76	11.9999
fffe	chr17:48827994-48828251(+)$1	257	175	179	11.9999
hhhh	chr9:71833198-71833613(+)$1	415	193	197	11.9999
EEEE	chr5:10403543-10403770(+)$1	227	72	76	11.9999
((((	chr17:38990862-38991177(+)$1	315	69	73	11.9999
^^^^	chr9:86584165-86584394(-)$1	229	24	28	11.9999
h:ff	chr20:33645222-33645464(-)$1	242	92	96	11.9999
>>>>	chr4:2009581-2009885(-)$1	304	91	95	11.9999
eeee	chr5:158589880-158590130(-)$1	250	32	36	11.9999
hhhh	chr17:60087728-60087988(-)$1	260	134	138	11.9999
MMMM	chr16:18845986-18846333(-)$1	347	70	74	11.9999
::::	chr6:136596699-136597004(-)$1	305	6	10	11.9999
cccc	chr11:43423020-43423314(+)$1	294	62	66	11.9999
HHHH	chr3:52723120-52723414(+)$1	294	19	23	11.9999
cmmm	chr7:6509125-6509347(-)$1	222	114	118	11.9999
::::	chr2:181925423-181925640(+)$1	217	125	129	11.9999
h:::	chr10:121336429-121336705(-)$1	276	136	140	11.9999
EEEE	chrX:118923853-118924074(-)$1	221	36	40	11.9999
::::	chr17:56166515-56166767(+)$1	252	108	112	11.9999
ffff	chr1:46827322-46827580(+)$1	258	101	105	11.9999
::::	chr1:25687048-25687322(+)$1	274	10	14	11.9999
JJJJ	chr5:10400817-10401059(+)$1	242	226	230	11.9999
::::	chr4:17825289-17825559(+)$1	270	10	14	11.9999
d]ii	chr11:70265880-70266134(+)$1	254	85	89	11.9999
ffll	chr17:76220528-76220754(+)$1	226	84	88	11.9999
dd[b	chr3:183705385-183705637(-)$1	252	6	10	11.9999
::::	chr5:126860376-126860629(+)$1	253	99	103	11.9999
da##	chr2:32530577-32530828(+)$1	251	54	58	11.9999
qqqq	chr16:84214609-84214860(-)$1	251	60	64	11.9999
:hhh	chr9:79890454-79890821(+)$1	367	8	12	11.9999
wwww	chr17:8370441-8370690(+)$1	249	100	104	11.9999
BBJJ	chr12:102107794-102108081(+)$1	287	46	50	11.9999
gggg	chr12:123060342-123060628(+)$1	286	84	88	11.9999
::::	chr11:6569132-6569401(+)$1	269	1	5	11.9999
dddd	chr7:16816601-16816851(+)$1	250	110	114	11.9999
EE::	chr5:137524540-137524839(-)$1	299	155	159	11.9999

#DB
((((	chr12:111160076-111160352(-)$1	1	54	58	11.9999
...)	chr5:179249760-179249994(+)$1	1	43	47	11.9999
..((	chr7:6509280-6509486(-)$1	1	5	9	11.9999
.(((	chr3:197598169-197598445(+)$1	1	18	22	11.9999
((((	chr1:236703866-236704131(+)$1	1	142	146	11.9999
((((	chr3:138409724-138409958(-)$1	1	33	37	11.9999
((((	chrX:13337534-13337781(+)$1	1	189	193	11.9999
.)))	chr1:78187509-78187776(-)$1	1	82	86	11.9999
))))	chr6:80721438-80721746(+)$1	1	119	123	11.9999
.(((	chr18:260123-260386(-)$1	1	4	8	11.9999
((..	chr1:6655377-6655622(-)$1	1	209	213	11.9999
((..	chr17:76220517-76220728(+)$1	1	95	99	11.9999
....	chr17:57746045-57746301(+)$1	1	84	88	11.9999
))))	chr2:187367237-187367534(+)$1	1	88	92	11.9999
(((.	chr12:98941438-98941699(+)$1	1	167	171	11.9999
((..	chr10:103572497-103572727(-)$1	1	59	63	11.9999
....	chr18:12986729-12986968(+)$1	1	29	33	11.9999
....	chr3:141632508-141632768(+)$1	1	151	155	11.9999
((((	chr1:165621147-165621372(+)$1	1	49	53	11.9999
..))	chr1:154317868-154318130(+)$1	1	71	75	11.9999
....	chr2:131904236-131904487(+)$1	1	102	106	11.9999
((((	chr11:9309880-9310172(-)$1	1	37	41	11.9999
..))	chr10:126086531-126086768(-)$1	1	62	66	11.9999
....	chr7:6513713-6513933(-)$1	1	54	58	11.9999
))))	chr17:48827976-48828194(+)$1	1	193	197	11.9999
....	chr11:66391928-66392228(+)$1	1	44	48	11.9999
((((	chr4:166261411-166261638(+)$1	1	11	15	11.9999
))))	chr10:98287740-98288010(-)$1	1	56	60	11.9999
((((	chr19:1468333-1468614(-)$1	1	33	37	11.9999
....	chr14:54898751-54898991(-)$1	1	84	88	11.9999
.(((	chr7:128633745-128633985(-)$1	1	93	97	11.9999
((((	chr19:1469340-1469652(-)$1	1	218	222	11.9999
((((	chr5:10403520-10403739(+)$1	1	95	99	11.9999
....	chr14:23057770-23057990(-)$1	1	89	93	11.9999
((((	chr1:165623421-165623663(+)$1	1	56	60	11.9999
....	chr11:64540866-64541092(-)$1	1	23	27	11.9999
.)))	chr1:53333195-53333443(+)$1	1	125	129	11.9999
....	chr22:50016768-50017011(-)$1	1	186	190	11.9999
(((.	chr17:46972960-46973227(+)$1	1	79	83	11.9999
))))	chr1:155883834-155884092(-)$1	1	215	219	11.9999
...)	chr8:124221551-124221798(+)$1	1	36	40	11.9999
(...	chr17:48828136-48828389(+)$1	1	33	37	11.9999
..((	chr12:123463444-123463698(+)$1	1	72	76	11.9999
))))	chr17:48827994-48828251(+)$1	1	175	179	11.9999
))))	chr9:71833198-71833613(+)$1	1	193	197	11.9999
((((	chr5:10403543-10403770(+)$1	1	72	76	11.9999
....	chr17:38990862-38991177(+)$1	1	69	73	11.9999
....	chr9:86584165-86584394(-)$1	1	24	28	11.9999
).((	chr20:33645222-33645464(-)$1	1	92	96	11.9999
....	chr4:2009581-2009885(-)$1	1	91	95	11.9999
))))	chr5:158589880-158590130(-)$1	1	32	36	11.9999
((((	chr17:60087728-60087988(-)$1	1	134	138	11.9999
....	chr16:18845986-18846333(-)$1	1	70	74	11.9999
....	chr6:136596699-136597004(-)$1	1	6	10	11.9999
))))	chr11:43423020-43423314(+)$1	1	62	66	11.9999
((((	chr3:52723120-52723414(+)$1	1	19	23	11.9999
(...	chr7:6509125-6509347(-)$1	1	114	118	11.9999
....	chr2:181925423-181925640(+)$1	1	125	129	11.9999
)...	chr10:121336429-121336705(-)$1	1	136	140	11.9999
((((	chrX:118923853-118924074(-)$1	1	36	40	11.9999
....	chr17:56166515-56166767(+)$1	1	108	112	11.9999
))))	chr1:46827322-46827580(+)$1	1	101	105	11.9999
....	chr1:25687048-25687322(+)$1	1	10	14	11.9999
))))	chr5:10400817-10401059(+)$1	1	226	230	11.9999
....	chr4:17825289-17825559(+)$1	1	10	14	11.9999
).))	chr11:70265880-70266134(+)$1	1	85	89	11.9999
((..	chr17:76220528-76220754(+)$1	1	84	88	11.9999
((.(	chr3:183705385-183705637(-)$1	1	6	10	11.9999
....	chr5:126860376-126860629(+)$1	1	99	103	11.9999
((..	chr2:32530577-32530828(+)$1	1	54	58	11.9999
....	chr16:84214609-84214860(-)$1	1	60	64	11.9999
.(((	chr9:79890454-79890821(+)$1	1	8	12	11.9999
....	chr17:8370441-8370690(+)$1	1	100	104	11.9999
((((	chr12:102107794-102108081(+)$1	1	46	50	11.9999
))))	chr12:123060342-123060628(+)$1	1	84	88	11.9999
....	chr11:6569132-6569401(+)$1	1	1	5	11.9999
((((	chr7:16816601-16816851(+)$1	1	110	114	11.9999
))..	chr5:137524540-137524839(-)$1	1	155	159	11.9999

#PSSM
U : 0.96	u : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	

#score	935.9999999999995
#seq	78
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_UTR_m1_run1.nuc.txt

#NT
ggggucggcggcg	chr2:132249807-132250069(-)$1	262	149	162	23.2222
GGCGGCGGCGGCG	chr20:56884779-56885061(+)$1	282	17	30	32.3333
ggcggcggcggcu	chr16:19078880-19079161(+)$1	281	120	133	28.6666
GGCGGCCGCGGCU	chr2:42396558-42396807(+)$1	249	18	31	24.2222
GGCAGUGGCGGCG	chr15:75287820-75288116(+)$1	296	22	35	24.1111
GGCAGAGGCGGCG	chr14:39572219-39572462(-)$1	243	25	38	24.2222
GGCGUCGGCUGCG	chr19:50321445-50321748(+)$1	303	107	120	23.9999
GGCGGAGGCGGCG	chr2:54014144-54014464(+)$1	320	33	46	28.5555
GGAGGCGGCGGCG	chr19:47249518-47249788(-)$1	270	239	252	27.7777
gccgggggcggcg	chr21:45285078-45285333(+)$1	255	4	17	24.2222
ggcggcggccgcg	chr17:80477655-80477907(+)$1	252	111	124	28.7777
GGUGGCGGCGGCG	chr2:227663738-227664012(-)$1	274	248	261	27.7777
cgcggcgggggcg	chr2:10588146-10588422(-)$1	276	79	92	24.9999
ggcggcggcggcg	chr6:7910853-7911111(-)$1	258	221	234	32.3333
ggcggcggcggcg	chr22:43582910-43583221(-)$1	311	98	111	32.3333
GGCGGCGGAGCCG	chr19:56186593-56186862(+)$1	269	67	80	23.9999
gccggcggcggcg	chr12:111180477-111180726(-)$1	249	170	183	27.9999
GGCGGGGGCAGCG	chr3:155588411-155588661(+)$1	250	18	31	24.8888
gccggcggcggcg	chr21:34602213-34602493(+)$1	280	0	13	27.9999
GGCGGCCGCGGCA	chr6:90062334-90062646(-)$1	312	26	39	23.7777
cgcggcgggcgcg	chr6:160114131-160114435(-)$1	304	37	50	21.4444
CGCGGCGGCGGCG	chr16:67906887-67907161(+)$1	274	224	237	28.9999
CGCGGCAGCGGCG	chr4:83294880-83295115(-)$1	235	193	206	24.4444
GGCCGCGGCGGCU	chr14:102975783-102976056(-)$1	273	27	40	24.3333
GGCGGUGGUGGCG	chr5:108745511-108745756(-)$1	245	153	166	24.5555
ggcggcggcggcg	chr6:75994328-75994586(-)$1	258	128	141	32.3333
ggcggcggcggcg	chr11:115374927-115375226(-)$1	299	161	174	32.3333
ggcggcggcggcg	chr16:30087241-30087515(+)$1	274	88	101	32.3333
ggcggcggcagcg	chr17:73401518-73401742(-)$1	224	13	26	28.6666
ggcggcggcggcg	chr12:64798080-64798321(+)$1	241	183	196	32.3333
ggcggcggcgccg	chr3:33481512-33481782(-)$1	270	171	184	27.9999
ggcggcgguggcu	chr9:136223172-136223432(-)$1	260	105	118	24.7777
GGCGGCGGCGCCG	chr2:120770636-120770887(+)$1	251	165	178	27.9999
ggccgggguggcg	chr20:25176267-25176534(+)$1	267	128	141	20.3333
UGCGGCGGCGGCG	chr2:85829627-85829884(-)$1	257	127	140	28.3333
GGCGGCGGCUGGG	chr12:108956278-108956605(+)$1	327	122	135	23.9999
GGCGGCGCCCGCG	chr6:138428506-138428731(-)$1	225	152	165	23.9999
ggcggcggcggcg	chr3:182511368-182511666(+)$1	298	51	64	32.3333
ggcggcggccggg	chr11:44117195-44117462(+)$1	267	225	238	24.2222
ggcggaggcggcg	chr2:88926589-88926902(-)$1	313	229	242	28.5555
CGCGGCGGCGGCC	chr16:11038328-11038562(+)$1	234	38	51	24.8888
ggcggcggaggcg	chr2:191513666-191513959(+)$1	293	44	57	28.3333
GGCGGCGGCAGCU	chr12:63328427-63328670(-)$1	243	229	242	24.9999
Cgcggcggcggcg	chr3:48885062-48885324(-)$1	262	67	80	28.9999

#otherMatches

#Struct PSSM
=========!!bb	chr8:102217647-102217984(-)$1	337	145	158	28.9999
d22ccc:BB}HHH	chr2:132249807-132250069(-)$1	262	149	162	23.2222
cc]dddd]ddddG	chr20:56884779-56885061(+)$1	282	17	30	32.3333
eee[bb[a[ccc[	chr16:19078880-19079161(+)$1	281	120	133	28.6666
fff!!ccc[ffff	chr2:42396558-42396807(+)$1	249	18	31	24.2222
ffffff:ccceee	chr15:75287820-75288116(+)$1	296	22	35	24.1111
ggg"""ccclllc	chr14:39572219-39572462(-)$1	243	25	38	24.2222
fffmmmmffffff	chr19:50321445-50321748(+)$1	303	107	120	23.9999
FFFLLLCCCKKJJ	chr2:54014144-54014464(+)$1	320	33	46	28.5555
cc]eeeee]bbcc	chr19:47249518-47249788(-)$1	270	239	252	27.7777
EE{IIIIIIIIIb	chr21:45285078-45285333(+)$1	255	4	17	24.2222
ccc]bb22eeeee	chr17:80477655-80477907(+)$1	252	111	124	28.7777
dd]a]dddd]ddd	chr2:227663738-227664012(-)$1	274	248	261	27.7777
dbb[iiiiiiiii	chr2:10588146-10588422(-)$1	276	79	92	24.9999
JJJJJJJJJJJJJ	chr6:7910853-7911111(-)$1	258	221	234	32.3333
cbb[bb[bbmmmm	chr22:43582910-43583221(-)$1	311	98	111	32.3333
fffffflllffff	chr19:56186593-56186862(+)$1	269	67	80	23.9999
ggggggggglllg	chr12:111180477-111180726(-)$1	249	170	183	27.9999
IIIIIIIffffff	chr3:155588411-155588661(+)$1	250	18	31	24.8888
::::dddd[gggg	chr21:34602213-34602493(+)$1	280	0	13	27.9999
iiii[ccc[ccc[	chr6:90062334-90062646(-)$1	312	26	39	23.7777
b[a[bbmmmmbb]	chr6:160114131-160114435(-)$1	304	37	50	21.4444
bdddd]dddd]cc	chr16:67906887-67907161(+)$1	274	224	237	28.9999
hhhhbb=======	chr4:83294880-83295115(-)$1	235	193	206	24.4444
NDDDD{BB{BBMM	chr14:102975783-102976056(-)$1	273	27	40	24.3333
============]	chr5:108745511-108745756(-)$1	245	153	166	24.5555
eeeee]bb]eeee	chr6:75994328-75994586(-)$1	258	128	141	32.3333
bb[==========	chr11:115374927-115375226(-)$1	299	161	174	32.3333
[bb[bbmmmmbb]	chr16:30087241-30087515(+)$1	274	88	101	32.3333
c[ggggggg!!cc	chr17:73401518-73401742(-)$1	224	13	26	28.6666
c[ccc[bb[a[dd	chr12:64798080-64798321(+)$1	241	183	196	32.3333
e[a####eeeeep	chr3:33481512-33481782(-)$1	270	171	184	27.9999
g[ddddmmmmddd	chr9:136223172-136223432(-)$1	260	105	118	24.7777
iiiiiiccc!!ff	chr2:120770636-120770887(+)$1	251	165	178	27.9999
ccc!!ggggggge	chr20:25176267-25176534(+)$1	267	128	141	20.3333
ffffffbb[dddd	chr2:85829627-85829884(-)$1	257	127	140	28.3333
b]dddd=======	chr12:108956278-108956605(+)$1	327	122	135	23.9999
ffffff]cccddd	chr6:138428506-138428731(-)$1	225	152	165	23.9999
eeeee[eeeee%%	chr3:182511368-182511666(+)$1	298	51	64	32.3333
22dddd22fffff	chr11:44117195-44117462(+)$1	267	225	238	24.2222
ooooooa]ggggg	chr2:88926589-88926902(-)$1	313	229	242	28.5555
LGGGGGGGeeeee	chr16:11038328-11038562(+)$1	234	38	51	24.8888
6bb:bbmmmmbbC	chr2:191513666-191513959(+)$1	293	44	57	28.3333
HHHHHHHHYYDDD	chr12:63328427-63328670(-)$1	243	229	242	24.9999
[a[ffffffmmmm	chr3:48885062-48885324(-)$1	262	67	80	28.9999

#DB
(((((((((..((	chr8:102217647-102217984(-)$1	1	145	158	28.9999
)..))).)).)))	chr2:132249807-132250069(-)$1	1	149	162	23.2222
)).)))).))))(	chr20:56884779-56885061(+)$1	1	17	30	32.3333
(((.((.(.(((.	chr16:19078880-19079161(+)$1	1	120	133	28.6666
(((..(((.((((	chr2:42396558-42396807(+)$1	1	18	31	24.2222
)))))).((((((	chr15:75287820-75288116(+)$1	1	22	35	24.1111
(((...(((...)	chr14:39572219-39572462(-)$1	1	25	38	24.2222
(((....))))))	chr19:50321445-50321748(+)$1	1	107	120	23.9999
(((...(((..((	chr2:54014144-54014464(+)$1	1	33	46	28.5555
)).))))).))))	chr19:47249518-47249788(-)$1	1	239	252	27.7777
((.((((((((((	chr21:45285078-45285333(+)$1	1	4	17	24.2222
))).))..)))))	chr17:80477655-80477907(+)$1	1	111	124	28.7777
)).).)))).)))	chr2:227663738-227664012(-)$1	1	248	261	27.7777
(((.(((((((((	chr2:10588146-10588422(-)$1	1	79	92	24.9999
)))))))))))))	chr6:7910853-7911111(-)$1	1	221	234	32.3333
(((.((.((....	chr22:43582910-43583221(-)$1	1	98	111	32.3333
((((((...))))	chr19:56186593-56186862(+)$1	1	67	80	23.9999
))(((((((...)	chr12:111180477-111180726(-)$1	1	170	183	27.9999
(((((((((((((	chr3:155588411-155588661(+)$1	1	18	31	24.8888
....((((.((((	chr21:34602213-34602493(+)$1	1	0	13	27.9999
((((.(((.(((.	chr6:90062334-90062646(-)$1	1	26	39	23.7777
(.(.((....)).	chr6:160114131-160114435(-)$1	1	37	50	21.4444
))))).)))).))	chr16:67906887-67907161(+)$1	1	224	237	28.9999
))))(((((((((	chr4:83294880-83295115(-)$1	1	193	206	24.4444
.((((.((.((..	chr14:102975783-102976056(-)$1	1	27	40	24.3333
)))))))))))).	chr5:108745511-108745756(-)$1	1	153	166	24.5555
))))).)).))))	chr6:75994328-75994586(-)$1	1	128	141	32.3333
((.((((((((((	chr11:115374927-115375226(-)$1	1	161	174	32.3333
.((.((....)).	chr16:30087241-30087515(+)$1	1	88	101	32.3333
(.(((((((..((	chr17:73401518-73401742(-)$1	1	13	26	28.6666
(.(((.((.(.((	chr12:64798080-64798321(+)$1	1	183	196	32.3333
(.(....(((((.	chr3:33481512-33481782(-)$1	1	171	184	27.9999
(.((((....)))	chr9:136223172-136223432(-)$1	1	105	118	24.7777
))))))(((..((	chr2:120770636-120770887(+)$1	1	165	178	27.9999
(((..((((((((	chr20:25176267-25176534(+)$1	1	128	141	20.3333
))))))((.((((	chr2:85829627-85829884(-)$1	1	127	140	28.3333
).))))(((((((	chr12:108956278-108956605(+)$1	1	122	135	23.9999
)))))).)))(((	chr6:138428506-138428731(-)$1	1	152	165	23.9999
(((((.(((((..	chr3:182511368-182511666(+)$1	1	51	64	32.3333
..))))..)))))	chr11:44117195-44117462(+)$1	1	225	238	24.2222
......).)))))	chr2:88926589-88926902(-)$1	1	229	242	28.5555
.((((((((((((	chr16:11038328-11038562(+)$1	1	38	51	24.8888
.)).((....))(	chr2:191513666-191513959(+)$1	1	44	57	28.3333
))))))))..)))	chr12:63328427-63328670(-)$1	1	229	242	24.9999
.(.((((((....	chr3:48885062-48885324(-)$1	1	67	80	28.9999

#PSSM
g : 0.44	G : 0.37	C : 0.08	c : 0.06	U : 0.02	
g : 0.46	G : 0.46	c : 0.06	
c : 0.51	C : 0.42	g : 0.02	A : 0.02	U : 0.02	
g : 0.51	G : 0.39	A : 0.04	C : 0.02	c : 0.02	
g : 0.51	G : 0.44	u : 0.02	U : 0.02	
c : 0.46	C : 0.35	U : 0.04	A : 0.04	g : 0.04	G : 0.02	a : 0.02	
g : 0.53	G : 0.39	C : 0.04	A : 0.02	
g : 0.53	G : 0.44	C : 0.02	
c : 0.42	C : 0.42	g : 0.04	u : 0.04	A : 0.02	U : 0.02	a : 0.02	
g : 0.44	G : 0.35	c : 0.06	U : 0.04	A : 0.04	a : 0.02	C : 0.02	
g : 0.51	G : 0.42	C : 0.04	c : 0.02	
c : 0.51	C : 0.44	G : 0.02	g : 0.02	
g : 0.48	G : 0.35	U : 0.06	u : 0.04	A : 0.02	C : 0.02	

#score	1216.7777777777774
#seq	45
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_UTR_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
ggggggg!!ffffffmmmmffffff]ggggggg:ddddggggggg[ccc[eeeee$$$$$hhhhhhhh"""ccc!!iiiiiiiiiqqqqqqqqiiiiiiiiiccchhhhhhhh333eeeeecccggggggg55555ddddbb!!eeeee"""ffffffffffff!!cccmmmmccc>>>>>>>>>>>>ffffff]ffffff22eeeee22bb:cccccc[ddddnnnnndddd]ccc]ccc:::DDDDYYBB::::::::::	chr1:249151853-249152142(-)$1	289	27	289	786.0000

#DB
(((((((..((((((....)))))).))))))).(((((((((((.(((.(((((.....((((((((...(((..(((((((((........))))))))))))))))))))...))))))))))))))).....))))((..(((((...((((((((((((..(((....)))............)))))).))))))..)))))..)).((((((.((((.....)))).))).)))...))))..))..........	chr1:249151853-249152142(-)$1	1	27	289	786.0000

#PSSM
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	

#score	786.0
#seq	1
#width	262
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_transcript_m3_run2.nuc.txt

#NT
CUGG	chr14:94775974-94776212(-)$1	238	9	13	11.9999
CUGG	chrX:152969431-152969649(-)$1	218	2	6	11.9999
CUGG	chr4:74306265-74306472(+)$1	207	65	69	11.9999
CUGG	chr11:46749610-46749813(+)$1	203	1	5	11.9999
CUGG	chr15:73865901-73866142(-)$1	241	21	25	11.9999
CUGG	chr14:24658783-24659025(-)$1	242	157	161	11.9999
CUGG	chr13:113803654-113803910(+)$1	256	23	27	11.9999
CUGG	chr3:98514942-98515194(-)$1	252	117	121	11.9999
CUGG	chr19:18499457-18499669(+)$1	212	18	22	11.9999
CUGG	chr11:88042229-88042444(-)$1	215	64	68	11.9999
CUGG	chr17:1651831-1652043(+)$1	212	17	21	11.9999
CUGG	chr2:55200629-55200857(-)$1	228	203	207	11.9999
CUGG	chr7:75615598-75615843(+)$1	245	183	187	11.9999
CUGG	chr14:21161964-21162221(+)$1	257	94	98	11.9999
CUGG	chr19:6707760-6707975(-)$1	215	37	41	11.9999
CUGG	chr12:9225218-9225440(-)$1	222	31	35	11.9999
CUGG	chr22:51065706-51065930(-)$1	224	143	147	11.9999
CUGG	chr1:44442735-44442983(+)$1	248	51	55	11.9999
CUGG	chr17:61841375-61841601(-)$1	226	74	78	11.9999
CUGG	chr2:162876648-162876886(-)$1	238	106	110	11.9999
CUGG	chr3:4459599-4459887(-)$1	288	98	102	11.9999
CUGG	chr4:74306298-74306531(+)$1	233	32	36	11.9999
CUGG	chr12:104331375-104331590(+)$1	215	12	16	11.9999
CUGG	chr13:24242801-24243046(+)$1	245	110	114	11.9999
CUGG	chr11:64010592-64010852(+)$1	260	55	59	11.9999
CUGG	chr16:88712428-88712647(-)$1	219	67	71	11.9999
CUGG	chr2:216261787-216262026(-)$1	239	106	110	11.9999
CUGG	chr11:1774720-1774927(-)$1	207	101	105	11.9999
CUGG	chr1:183091169-183091409(+)$1	240	55	59	11.9999
CUGG	chr2:21245665-21245894(-)$1	229	106	110	11.9999
CUGG	chr14:95053992-95054273(+)$1	281	115	119	11.9999
CUGG	chr19:11231030-11231298(+)$1	268	22	26	11.9999
CUGG	chr22:33253963-33254221(+)$1	258	144	148	11.9999
CUGG	chr17:1674222-1674438(+)$1	216	33	37	11.9999
CUGG	chr2:27426624-27426835(-)$1	211	9	13	11.9999
CUGG	chr19:11559980-11560198(+)$1	218	34	38	11.9999
CUGG	chr9:131848890-131849132(+)$1	242	35	39	11.9999
CUGG	chr1:169096361-169096563(+)$1	202	65	69	11.9999
CUGG	chr1:52490093-52490334(-)$1	241	149	153	11.9999
CUGG	chr15:74704140-74704391(-)$1	251	151	155	11.9999
CUGG	chr20:61469954-61470202(+)$1	248	125	129	11.9999
CUGG	chrX:77380721-77380956(+)$1	235	84	88	11.9999
CUGG	chr2:219141987-219142203(-)$1	216	138	142	11.9999
cugg	chr12:53291105-53291371(-)$1	266	22	26	11.9999
CUGG	chr4:155529692-155529901(-)$1	209	131	135	11.9999
CUGG	chr3:52471956-52472222(-)$1	266	31	35	11.9999
CUGG	chr3:194063008-194063264(-)$1	256	127	131	11.9999
CUGG	chr3:170723697-170723950(-)$1	253	117	121	11.9999
CUGG	chr15:79215236-79215477(-)$1	241	60	64	11.9999
CUGG	chr5:151046974-151047259(-)$1	285	36	40	11.9999
CUGG	chr6:31963631-31963853(+)$1	222	5	9	11.9999
CUGG	chr11:118918649-118918879(-)$1	230	102	106	11.9999
CUGG	chr19:6678067-6678272(-)$1	205	45	49	11.9999
CUGG	chr19:45411795-45412028(+)$1	233	43	47	11.9999
CUGG	chr9:101980832-101981117(-)$1	285	26	30	11.9999
CUGG	chr2:106741974-106742236(-)$1	262	103	107	11.9999
CUGG	chr15:90349196-90349448(-)$1	252	96	100	11.9999
CUGG	chr7:148702230-148702466(-)$1	236	87	91	11.9999
CUGG	chr11:125489807-125490039(+)$1	232	166	170	11.9999
CUGG	chr11:46749529-46749738(+)$1	209	82	86	11.9999
CUGG	chr17:4693286-4693557(+)$1	271	1	5	11.9999
CUGG	chr2:216246879-216247084(-)$1	205	128	132	11.9999
CUGG	chr7:99573477-99573685(-)$1	208	84	88	11.9999
CUGG	chr12:3389453-3389744(+)$1	291	35	39	11.9999
CUGG	chr15:72637686-72637908(-)$1	222	171	175	11.9999
CUGG	chr3:127779385-127779604(+)$1	219	32	36	11.9999
CUGG	chr11:61615640-61615857(+)$1	217	4	8	11.9999
CUGG	chr16:5127838-5128102(+)$1	264	118	122	11.9999
CUGG	chr20:23615790-23615992(-)$1	202	24	28	11.9999
CUGG	chr1:116944099-116944326(+)$1	227	116	120	11.9999
CUGG	chr11:116701452-116701712(+)$1	260	169	173	11.9999
CUGG	chr17:72436543-72436774(+)$1	231	32	36	11.9999
CUGG	chr11:116706984-116707200(-)$1	216	25	29	11.9999
CUGG	chr11:130011330-130011567(+)$1	237	77	81	11.9999
CUGG	chr20:44521267-44521479(+)$1	212	190	194	11.9999
CUGG	chr19:54377320-54377540(+)$1	220	69	73	11.9999
CUGG	chr17:1675190-1675413(+)$1	223	7	11	11.9999
CUGG	chr4:39448231-39448517(+)$1	286	135	139	11.9999
CUGG	chr16:74528590-74528828(-)$1	238	106	110	11.9999
CUGG	chr1:155106105-155106357(+)$1	252	159	163	11.9999
CUGG	chr3:127778876-127779124(+)$1	248	149	153	11.9999
CUGG	chr7:75610381-75610590(+)$1	209	50	54	11.9999
CUGG	chr6:44201496-44201765(+)$1	269	159	163	11.9999
CUGG	chr20:30142493-30142733(+)$1	240	12	16	11.9999

#otherMatches

#Struct PSSM
dnnn	chr10:102116374-102116597(+)$1	223	49	53	11.9999
bddd	chr14:94775974-94776212(-)$1	238	9	13	11.9999
EEEE	chrX:152969431-152969649(-)$1	218	2	6	11.9999
nnbb	chr4:74306265-74306472(+)$1	207	65	69	11.9999
cccc	chr11:46749610-46749813(+)$1	203	1	5	11.9999
EE:F	chr15:73865901-73866142(-)$1	241	21	25	11.9999
2ccc	chr14:24658783-24659025(-)$1	242	157	161	11.9999
CCKK	chr13:113803654-113803910(+)$1	256	23	27	11.9999
ddoo	chr3:98514942-98515194(-)$1	252	117	121	11.9999
c]cc	chr19:18499457-18499669(+)$1	212	18	22	11.9999
lfff	chr11:88042229-88042444(-)$1	215	64	68	11.9999
B{BB	chr17:1651831-1652043(+)$1	212	17	21	11.9999
ccc4	chr2:55200629-55200857(-)$1	228	203	207	11.9999
ddcc	chr7:75615598-75615843(+)$1	245	183	187	11.9999
oo==	chr14:21161964-21162221(+)$1	257	94	98	11.9999
55cc	chr19:6707760-6707975(-)$1	215	37	41	11.9999
mccc	chr12:9225218-9225440(-)$1	222	31	35	11.9999
ffff	chr22:51065706-51065930(-)$1	224	143	147	11.9999
g444	chr1:44442735-44442983(+)$1	248	51	55	11.9999
eeee	chr17:61841375-61841601(-)$1	226	74	78	11.9999
!!cc	chr2:162876648-162876886(-)$1	238	106	110	11.9999
dddd	chr3:4459599-4459887(-)$1	288	98	102	11.9999
nnbb	chr4:74306298-74306531(+)$1	233	32	36	11.9999
EE:e	chr12:104331375-104331590(+)$1	215	12	16	11.9999
lllb	chr13:24242801-24243046(+)$1	245	110	114	11.9999
ccc3	chr11:64010592-64010852(+)$1	260	55	59	11.9999
ffff	chr16:88712428-88712647(-)$1	219	67	71	11.9999
DDDD	chr2:216261787-216262026(-)$1	239	106	110	11.9999
c888	chr11:1774720-1774927(-)$1	207	101	105	11.9999
22cc	chr1:183091169-183091409(+)$1	240	55	59	11.9999
====	chr2:21245665-21245894(-)$1	229	106	110	11.9999
nnee	chr14:95053992-95054273(+)$1	281	115	119	11.9999
dddd	chr19:11231030-11231298(+)$1	268	22	26	11.9999
b[ee	chr22:33253963-33254221(+)$1	258	144	148	11.9999
EEEE	chr17:1674222-1674438(+)$1	216	33	37	11.9999
FFFE	chr2:27426624-27426835(-)$1	211	9	13	11.9999
FFFF	chr19:11559980-11560198(+)$1	218	34	38	11.9999
dfff	chr9:131848890-131849132(+)$1	242	35	39	11.9999
gggg	chr1:169096361-169096563(+)$1	202	65	69	11.9999
iiii	chr1:52490093-52490334(-)$1	241	149	153	11.9999
gggg	chr15:74704140-74704391(-)$1	251	151	155	11.9999
EEEE	chr20:61469954-61470202(+)$1	248	125	129	11.9999
eeeu	chrX:77380721-77380956(+)$1	235	84	88	11.9999
ppee	chr2:219141987-219142203(-)$1	216	138	142	11.9999
fff[	chr12:53291105-53291371(-)$1	266	22	26	11.9999
qddd	chr4:155529692-155529901(-)$1	209	131	135	11.9999
hhhh	chr3:52471956-52472222(-)$1	266	31	35	11.9999
[ggg	chr3:194063008-194063264(-)$1	256	127	131	11.9999
22gg	chr3:170723697-170723950(-)$1	253	117	121	11.9999
dddd	chr15:79215236-79215477(-)$1	241	60	64	11.9999
::gg	chr5:151046974-151047259(-)$1	285	36	40	11.9999
FFF:	chr6:31963631-31963853(+)$1	222	5	9	11.9999
ddcc	chr11:118918649-118918879(-)$1	230	102	106	11.9999
dddd	chr19:6678067-6678272(-)$1	205	45	49	11.9999
eeee	chr19:45411795-45412028(+)$1	233	43	47	11.9999
eeee	chr9:101980832-101981117(-)$1	285	26	30	11.9999
ffff	chr2:106741974-106742236(-)$1	262	103	107	11.9999
CCFF	chr15:90349196-90349448(-)$1	252	96	100	11.9999
ffff	chr7:148702230-148702466(-)$1	236	87	91	11.9999
IIII	chr11:125489807-125490039(+)$1	232	166	170	11.9999
eeee	chr11:46749529-46749738(+)$1	209	82	86	11.9999
gggg	chr17:4693286-4693557(+)$1	271	1	5	11.9999
lldd	chr2:216246879-216247084(-)$1	205	128	132	11.9999
cc[c	chr7:99573477-99573685(-)$1	208	84	88	11.9999
!eee	chr12:3389453-3389744(+)$1	291	35	39	11.9999
ffff	chr15:72637686-72637908(-)$1	222	171	175	11.9999
qqcc	chr3:127779385-127779604(+)$1	219	32	36	11.9999
:eee	chr11:61615640-61615857(+)$1	217	4	8	11.9999
ddcc	chr16:5127838-5128102(+)$1	264	118	122	11.9999
aooo	chr20:23615790-23615992(-)$1	202	24	28	11.9999
66bb	chr1:116944099-116944326(+)$1	227	116	120	11.9999
gggg	chr11:116701452-116701712(+)$1	260	169	173	11.9999
ahhh	chr17:72436543-72436774(+)$1	231	32	36	11.9999
Eeee	chr11:116706984-116707200(-)$1	216	25	29	11.9999
eeee	chr11:130011330-130011567(+)$1	237	77	81	11.9999
}FFF	chr20:44521267-44521479(+)$1	212	190	194	11.9999
JJJJ	chr19:54377320-54377540(+)$1	220	69	73	11.9999
ffff	chr17:1675190-1675413(+)$1	223	7	11	11.9999
dddC	chr4:39448231-39448517(+)$1	286	135	139	11.9999
EEEE	chr16:74528590-74528828(-)$1	238	106	110	11.9999
addd	chr1:155106105-155106357(+)$1	252	159	163	11.9999
b[bb	chr3:127778876-127779124(+)$1	248	149	153	11.9999
cc]a	chr7:75610381-75610590(+)$1	209	50	54	11.9999
b:ee	chr6:44201496-44201765(+)$1	269	159	163	11.9999
::::	chr20:30142493-30142733(+)$1	240	12	16	11.9999

#DB
(...	chr10:102116374-102116597(+)$1	1	49	53	11.9999
((((	chr14:94775974-94776212(-)$1	1	9	13	11.9999
((((	chrX:152969431-152969649(-)$1	1	2	6	11.9999
..))	chr4:74306265-74306472(+)$1	1	65	69	11.9999
((((	chr11:46749610-46749813(+)$1	1	1	5	11.9999
((.(	chr15:73865901-73866142(-)$1	1	21	25	11.9999
.)))	chr14:24658783-24659025(-)$1	1	157	161	11.9999
((..	chr13:113803654-113803910(+)$1	1	23	27	11.9999
((..	chr3:98514942-98515194(-)$1	1	117	121	11.9999
).))	chr19:18499457-18499669(+)$1	1	18	22	11.9999
.)))	chr11:88042229-88042444(-)$1	1	64	68	11.9999
(.((	chr17:1651831-1652043(+)$1	1	17	21	11.9999
))).	chr2:55200629-55200857(-)$1	1	203	207	11.9999
))((	chr7:75615598-75615843(+)$1	1	183	187	11.9999
..))	chr14:21161964-21162221(+)$1	1	94	98	11.9999
..))	chr19:6707760-6707975(-)$1	1	37	41	11.9999
.)))	chr12:9225218-9225440(-)$1	1	31	35	11.9999
((((	chr22:51065706-51065930(-)$1	1	143	147	11.9999
)...	chr1:44442735-44442983(+)$1	1	51	55	11.9999
))))	chr17:61841375-61841601(-)$1	1	74	78	11.9999
..((	chr2:162876648-162876886(-)$1	1	106	110	11.9999
))))	chr3:4459599-4459887(-)$1	1	98	102	11.9999
..))	chr4:74306298-74306531(+)$1	1	32	36	11.9999
((.(	chr12:104331375-104331590(+)$1	1	12	16	11.9999
...)	chr13:24242801-24243046(+)$1	1	110	114	11.9999
))).	chr11:64010592-64010852(+)$1	1	55	59	11.9999
))))	chr16:88712428-88712647(-)$1	1	67	71	11.9999
((((	chr2:216261787-216262026(-)$1	1	106	110	11.9999
)...	chr11:1774720-1774927(-)$1	1	101	105	11.9999
..))	chr1:183091169-183091409(+)$1	1	55	59	11.9999
))))	chr2:21245665-21245894(-)$1	1	106	110	11.9999
..))	chr14:95053992-95054273(+)$1	1	115	119	11.9999
))))	chr19:11231030-11231298(+)$1	1	22	26	11.9999
(.((	chr22:33253963-33254221(+)$1	1	144	148	11.9999
((((	chr17:1674222-1674438(+)$1	1	33	37	11.9999
((((	chr2:27426624-27426835(-)$1	1	9	13	11.9999
((((	chr19:11559980-11560198(+)$1	1	34	38	11.9999
))))	chr9:131848890-131849132(+)$1	1	35	39	11.9999
((((	chr1:169096361-169096563(+)$1	1	65	69	11.9999
((((	chr1:52490093-52490334(-)$1	1	149	153	11.9999
))))	chr15:74704140-74704391(-)$1	1	151	155	11.9999
((((	chr20:61469954-61470202(+)$1	1	125	129	11.9999
(((.	chrX:77380721-77380956(+)$1	1	84	88	11.9999
..))	chr2:219141987-219142203(-)$1	1	138	142	11.9999
(((.	chr12:53291105-53291371(-)$1	1	22	26	11.9999
.)))	chr4:155529692-155529901(-)$1	1	131	135	11.9999
((((	chr3:52471956-52472222(-)$1	1	31	35	11.9999
.(((	chr3:194063008-194063264(-)$1	1	127	131	11.9999
..))	chr3:170723697-170723950(-)$1	1	117	121	11.9999
))))	chr15:79215236-79215477(-)$1	1	60	64	11.9999
..((	chr5:151046974-151047259(-)$1	1	36	40	11.9999
(((.	chr6:31963631-31963853(+)$1	1	5	9	11.9999
((((	chr11:118918649-118918879(-)$1	1	102	106	11.9999
)))(	chr19:6678067-6678272(-)$1	1	45	49	11.9999
((((	chr19:45411795-45412028(+)$1	1	43	47	11.9999
))))	chr9:101980832-101981117(-)$1	1	26	30	11.9999
))))	chr2:106741974-106742236(-)$1	1	103	107	11.9999
((((	chr15:90349196-90349448(-)$1	1	96	100	11.9999
((((	chr7:148702230-148702466(-)$1	1	87	91	11.9999
))))	chr11:125489807-125490039(+)$1	1	166	170	11.9999
))))	chr11:46749529-46749738(+)$1	1	82	86	11.9999
((((	chr17:4693286-4693557(+)$1	1	1	5	11.9999
..))	chr2:216246879-216247084(-)$1	1	128	132	11.9999
((.(	chr7:99573477-99573685(-)$1	1	84	88	11.9999
.(((	chr12:3389453-3389744(+)$1	1	35	39	11.9999
((((	chr15:72637686-72637908(-)$1	1	171	175	11.9999
..))	chr3:127779385-127779604(+)$1	1	32	36	11.9999
.(((	chr11:61615640-61615857(+)$1	1	4	8	11.9999
))((	chr16:5127838-5128102(+)$1	1	118	122	11.9999
(...	chr20:23615790-23615992(-)$1	1	24	28	11.9999
..))	chr1:116944099-116944326(+)$1	1	116	120	11.9999
))))	chr11:116701452-116701712(+)$1	1	169	173	11.9999
))))	chr17:72436543-72436774(+)$1	1	32	36	11.9999
((((	chr11:116706984-116707200(-)$1	1	25	29	11.9999
))))	chr11:130011330-130011567(+)$1	1	77	81	11.9999
.)))	chr20:44521267-44521479(+)$1	1	190	194	11.9999
((((	chr19:54377320-54377540(+)$1	1	69	73	11.9999
((((	chr17:1675190-1675413(+)$1	1	7	11	11.9999
))))	chr4:39448231-39448517(+)$1	1	135	139	11.9999
((((	chr16:74528590-74528828(-)$1	1	106	110	11.9999
))))	chr1:155106105-155106357(+)$1	1	159	163	11.9999
(.((	chr3:127778876-127779124(+)$1	1	149	153	11.9999
)).)	chr7:75610381-75610590(+)$1	1	50	54	11.9999
).((	chr6:44201496-44201765(+)$1	1	159	163	11.9999
....	chr20:30142493-30142733(+)$1	1	12	16	11.9999

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	

#score	1019.9999999999995
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_CDS_m3_run1.nuc.txt

#NT
UGA	chr1:1326779-1327058(-)$1	279	13	16	8.9999
UGA	chr1:213061211-213061460(+)$1	249	32	35	8.9999
UGA	chr7:23545293-23545535(-)$1	242	22	25	8.9999
UGA	chr1:22062974-22063237(-)$1	263	2	5	8.9999
UGA	chr11:9309172-9309416(-)$1	244	13	16	8.9999
UGA	chr1:71532469-71532724(-)$1	255	38	41	8.9999
UGA	chr22:29678268-29678519(+)$1	251	53	56	8.9999
UGA	chr1:21102389-21102608(-)$1	219	13	16	8.9999
uga	chr9:4860023-4860270(+)$1	247	55	58	8.9999
UGA	chr7:140534354-140534657(-)$1	303	65	68	8.9999
UGA	chr7:120781903-120782166(+)$1	263	48	51	8.9999
UGA	chr1:12405310-12405571(+)$1	261	114	117	8.9999
UGA	chr20:57242432-57242686(+)$1	254	118	121	8.9999
UGA	chr6:168325457-168325729(+)$1	272	22	25	8.9999
UGA	chr11:74716348-74716599(+)$1	251	28	31	8.9999
UGA	chr4:25769096-25769343(-)$1	247	16	19	8.9999
UGA	chr3:197574166-197574423(+)$1	257	5	8	8.9999
UGA	chr3:9965804-9966049(+)$1	245	47	50	8.9999
UGA	chr17:80053206-80053452(-)$1	246	137	140	8.9999
UGA	chr9:131750216-131750473(+)$1	257	7	10	8.9999
UGA	chr18:2729170-2729421(+)$1	251	18	21	8.9999
uga	chr6:15487425-15487685(+)$1	260	14	17	8.9999
UGA	chr1:155883999-155884258(-)$1	259	7	10	8.9999
uga	chr11:43467372-43467622(+)$1	250	9	12	8.9999
UGA	chr12:116412983-116413257(-)$1	274	22	25	8.9999
UGA	chr2:118860660-118860914(+)$1	254	41	44	8.9999
UGA	chr20:42087687-42087933(+)$1	246	38	41	8.9999
UGA	chr3:140675264-140675527(+)$1	263	59	62	8.9999
UGA	chr1:155883852-155884101(-)$1	249	8	11	8.9999
UGA	chr6:143486107-143486379(+)$1	272	76	79	8.9999
UGA	chr11:73429776-73430052(-)$1	276	0	3	8.9999
UGA	chr8:124361504-124361783(-)$1	279	40	43	8.9999
UGA	chr2:24086271-24086531(-)$1	260	61	64	8.9999
UGA	chr1:201824800-201825045(+)$1	245	111	114	8.9999
UGA	chr5:10386993-10387246(+)$1	253	48	51	8.9999
UGA	chr16:23424750-23425035(-)$1	285	115	118	8.9999
UGA	chr17:56083205-56083439(-)$1	234	57	60	8.9999
UGA	chr1:65897372-65897635(+)$1	263	71	74	8.9999
UGA	chr16:21629076-21629332(+)$1	256	4	7	8.9999
UGA	chr1:207966752-207967001(+)$1	249	34	37	8.9999
UGA	chr7:131163275-131163531(+)$1	256	11	14	8.9999
UGA	chr4:184633641-184633897(+)$1	256	131	134	8.9999
UGA	chr12:116443680-116443912(-)$1	232	36	39	8.9999
UGA	chr7:158723040-158723297(+)$1	257	20	23	8.9999
UGA	chr3:195789664-195789922(-)$1	258	30	33	8.9999
UGA	chr2:70454801-70455083(-)$1	282	151	154	8.9999
UGA	chr1:3807473-3807731(-)$1	258	26	29	8.9999
UGA	chr3:43753111-43753365(+)$1	254	46	49	8.9999
UGA	chr19:19767809-19768062(-)$1	253	133	136	8.9999
uga	chr8:103358482-103358734(-)$1	252	17	20	8.9999
UGA	chr3:100025173-100025424(+)$1	251	18	21	8.9999
uga	chr6:109697169-109697418(-)$1	249	0	3	8.9999
UGA	chr1:160208395-160208655(-)$1	260	34	37	8.9999
UGA	chr19:6416743-6416995(-)$1	252	16	19	8.9999
UGA	chr12:102406826-102407078(-)$1	252	31	34	8.9999
UGA	chr1:226258948-226259184(+)$1	236	111	114	8.9999
UGA	chr6:112397199-112397463(-)$1	264	12	15	8.9999
uga	chr7:98528137-98528398(+)$1	261	6	9	8.9999
UGA	chr2:135703561-135703821(+)$1	260	24	27	8.9999
UGA	chr17:56082267-56082525(-)$1	258	2	5	8.9999
UGA	chr11:47752984-47753219(-)$1	235	12	15	8.9999
UGA	chr7:140482813-140483078(-)$1	265	62	65	8.9999
UGA	chr22:45726365-45726634(+)$1	269	6	9	8.9999
UGA	chr2:230670458-230670712(-)$1	254	9	12	8.9999
ugA	chr16:88783486-88783728(-)$1	242	0	3	8.9999
UGA	chr12:57909768-57910046(+)$1	278	7	10	8.9999
UGA	chr18:12971034-12971295(+)$1	261	8	11	8.9999
UGA	chr3:43743598-43743838(+)$1	240	3	6	8.9999
UGA	chr15:64041840-64042098(-)$1	258	166	169	8.9999
UGA	chr3:42672553-42672816(+)$1	263	30	33	8.9999
UGA	chrX:123695524-123695770(-)$1	246	64	67	8.9999
UGA	chr17:40632569-40632842(+)$1	273	84	87	8.9999
UGA	chr12:123078727-123078976(+)$1	249	22	25	8.9999
UGA	chr7:26237329-26237598(-)$1	269	2	5	8.9999
UGA	chr20:33334579-33334839(-)$1	260	143	146	8.9999
uga	chr6:31711564-31711794(+)$1	230	6	9	8.9999
UGA	chr3:38539012-38539278(+)$1	266	195	198	8.9999
UGA	chr18:12986719-12987043(+)$1	324	249	252	8.9999
UGA	chr9:128094096-128094359(+)$1	263	1	4	8.9999
UGA	chr11:9309216-9309455(-)$1	239	3	6	8.9999
UGA	chr12:62954555-62954819(+)$1	264	1	4	8.9999
uga	chr10:70496525-70496778(+)$1	253	6	9	8.9999
UGA	chr1:179993454-179993705(+)$1	251	13	16	8.9999
UGA	chr2:20494111-20494413(-)$1	302	59	62	8.9999
UGA	chr2:234178535-234178780(+)$1	245	13	16	8.9999
UGA	chr13:39600385-39600651(-)$1	266	7	10	8.9999
UGA	chr14:31642485-31642750(-)$1	265	33	36	8.9999
UGA	chr14:23794344-23794592(+)$1	248	61	64	8.9999
UGA	chr6:47544153-47544418(+)$1	265	194	197	8.9999
UGA	chr4:169923204-169923466(-)$1	262	1	4	8.9999
UGA	chr6:32945774-32946051(+)$1	277	23	26	8.9999
UGA	chr4:68374692-68374941(-)$1	249	62	65	8.9999
UGA	chr10:103567517-103567770(-)$1	253	2	5	8.9999

#otherMatches

#Struct PSSM
:::	chr5:158596681-158596936(-)$1	255	10	13	8.9999
[bb	chr1:1326779-1327058(-)$1	279	13	16	8.9999
ggg	chr1:213061211-213061460(+)$1	249	32	35	8.9999
{BB	chr7:23545293-23545535(-)$1	242	22	25	8.9999
:::	chr1:22062974-22063237(-)$1	263	2	5	8.9999
CBB	chr11:9309172-9309416(-)$1	244	13	16	8.9999
2hh	chr1:71532469-71532724(-)$1	255	38	41	8.9999
gmm	chr22:29678268-29678519(+)$1	251	53	56	8.9999
e[b	chr1:21102389-21102608(-)$1	219	13	16	8.9999
iii	chr9:4860023-4860270(+)$1	247	55	58	8.9999
[bb	chr7:140534354-140534657(-)$1	303	65	68	8.9999
fff	chr7:120781903-120782166(+)$1	263	48	51	8.9999
nnn	chr1:12405310-12405571(+)$1	261	114	117	8.9999
ggg	chr20:57242432-57242686(+)$1	254	118	121	8.9999
mmm	chr6:168325457-168325729(+)$1	272	22	25	8.9999
ddd	chr11:74716348-74716599(+)$1	251	28	31	8.9999
hhh	chr4:25769096-25769343(-)$1	247	16	19	8.9999
CC:	chr3:197574166-197574423(+)$1	257	5	8	8.9999
hh]	chr3:9965804-9966049(+)$1	245	47	50	8.9999
eee	chr17:80053206-80053452(-)$1	246	137	140	8.9999
LLC	chr9:131750216-131750473(+)$1	257	7	10	8.9999
FF=	chr18:2729170-2729421(+)$1	251	18	21	8.9999
UUU	chr6:15487425-15487685(+)$1	260	14	17	8.9999
dqq	chr1:155883999-155884258(-)$1	259	7	10	8.9999
FF{	chr11:43467372-43467622(+)$1	250	9	12	8.9999
tcc	chr12:116412983-116413257(-)$1	274	22	25	8.9999
[bb	chr2:118860660-118860914(+)$1	254	41	44	8.9999
fff	chr20:42087687-42087933(+)$1	246	38	41	8.9999
nnn	chr3:140675264-140675527(+)$1	263	59	62	8.9999
GGG	chr1:155883852-155884101(-)$1	249	8	11	8.9999
FFF	chr6:143486107-143486379(+)$1	272	76	79	8.9999
DDD	chr11:73429776-73430052(-)$1	276	0	3	8.9999
eee	chr8:124361504-124361783(-)$1	279	40	43	8.9999
ppp	chr2:24086271-24086531(-)$1	260	61	64	8.9999
]dd	chr1:201824800-201825045(+)$1	245	111	114	8.9999
mff	chr5:10386993-10387246(+)$1	253	48	51	8.9999
ggp	chr16:23424750-23425035(-)$1	285	115	118	8.9999
qqq	chr17:56083205-56083439(-)$1	234	57	60	8.9999
:::	chr1:65897372-65897635(+)$1	263	71	74	8.9999
ee[	chr16:21629076-21629332(+)$1	256	4	7	8.9999
fff	chr1:207966752-207967001(+)$1	249	34	37	8.9999
FFF	chr7:131163275-131163531(+)$1	256	11	14	8.9999
!!f	chr4:184633641-184633897(+)$1	256	131	134	8.9999
nnn	chr12:116443680-116443912(-)$1	232	36	39	8.9999
EMM	chr7:158723040-158723297(+)$1	257	20	23	8.9999
hhh	chr3:195789664-195789922(-)$1	258	30	33	8.9999
ddd	chr2:70454801-70455083(-)$1	282	151	154	8.9999
HHH	chr1:3807473-3807731(-)$1	258	26	29	8.9999
ggg	chr3:43753111-43753365(+)$1	254	46	49	8.9999
qqq	chr19:19767809-19768062(-)$1	253	133	136	8.9999
mmm	chr8:103358482-103358734(-)$1	252	17	20	8.9999
JJJ	chr3:100025173-100025424(+)$1	251	18	21	8.9999
:ee	chr6:109697169-109697418(-)$1	249	0	3	8.9999
fff	chr1:160208395-160208655(-)$1	260	34	37	8.9999
bll	chr19:6416743-6416995(-)$1	252	16	19	8.9999
dpp	chr12:102406826-102407078(-)$1	252	31	34	8.9999
[bb	chr1:226258948-226259184(+)$1	236	111	114	8.9999
nnd	chr6:112397199-112397463(-)$1	264	12	15	8.9999
C{D	chr7:98528137-98528398(+)$1	261	6	9	8.9999
==$	chr2:135703561-135703821(+)$1	260	24	27	8.9999
:ff	chr17:56082267-56082525(-)$1	258	2	5	8.9999
[bb	chr11:47752984-47753219(-)$1	235	12	15	8.9999
DD:	chr7:140482813-140483078(-)$1	265	62	65	8.9999
DDK	chr22:45726365-45726634(+)$1	269	6	9	8.9999
:::	chr2:230670458-230670712(-)$1	254	9	12	8.9999
:DD	chr16:88783486-88783728(-)$1	242	0	3	8.9999
FFF	chr12:57909768-57910046(+)$1	278	7	10	8.9999
""d	chr18:12971034-12971295(+)$1	261	8	11	8.9999
:CC	chr3:43743598-43743838(+)$1	240	3	6	8.9999
yyy	chr15:64041840-64042098(-)$1	258	166	169	8.9999
EE:	chr3:42672553-42672816(+)$1	263	30	33	8.9999
JJJ	chrX:123695524-123695770(-)$1	246	64	67	8.9999
ee:	chr17:40632569-40632842(+)$1	273	84	87	8.9999
[bb	chr12:123078727-123078976(+)$1	249	22	25	8.9999
:::	chr7:26237329-26237598(-)$1	269	2	5	8.9999
cc!	chr20:33334579-33334839(-)$1	260	143	146	8.9999
ddd	chr6:31711564-31711794(+)$1	230	6	9	8.9999
ppp	chr3:38539012-38539278(+)$1	266	195	198	8.9999
ddD	chr18:12986719-12987043(+)$1	324	249	252	8.9999
:CC	chr9:128094096-128094359(+)$1	263	1	4	8.9999
:II	chr11:9309216-9309455(-)$1	239	3	6	8.9999
:ee	chr12:62954555-62954819(+)$1	264	1	4	8.9999
GNN	chr10:70496525-70496778(+)$1	253	6	9	8.9999
pee	chr1:179993454-179993705(+)$1	251	13	16	8.9999
$$d	chr2:20494111-20494413(-)$1	302	59	62	8.9999
nnn	chr2:234178535-234178780(+)$1	245	13	16	8.9999
Hff	chr13:39600385-39600651(-)$1	266	7	10	8.9999
DDL	chr14:31642485-31642750(-)$1	265	33	36	8.9999
eep	chr14:23794344-23794592(+)$1	248	61	64	8.9999
hh:	chr6:47544153-47544418(+)$1	265	194	197	8.9999
GGG	chr4:169923204-169923466(-)$1	262	1	4	8.9999
ddd	chr6:32945774-32946051(+)$1	277	23	26	8.9999
ddd	chr4:68374692-68374941(-)$1	249	62	65	8.9999
:cc	chr10:103567517-103567770(-)$1	253	2	5	8.9999

#DB
...	chr5:158596681-158596936(-)$1	1	10	13	8.9999
.((	chr1:1326779-1327058(-)$1	1	13	16	8.9999
(((	chr1:213061211-213061460(+)$1	1	32	35	8.9999
.((	chr7:23545293-23545535(-)$1	1	22	25	8.9999
...	chr1:22062974-22063237(-)$1	1	2	5	8.9999
(((	chr11:9309172-9309416(-)$1	1	13	16	8.9999
.))	chr1:71532469-71532724(-)$1	1	38	41	8.9999
(..	chr22:29678268-29678519(+)$1	1	53	56	8.9999
(.(	chr1:21102389-21102608(-)$1	1	13	16	8.9999
(((	chr9:4860023-4860270(+)$1	1	55	58	8.9999
.((	chr7:140534354-140534657(-)$1	1	65	68	8.9999
(((	chr7:120781903-120782166(+)$1	1	48	51	8.9999
...	chr1:12405310-12405571(+)$1	1	114	117	8.9999
(((	chr20:57242432-57242686(+)$1	1	118	121	8.9999
...	chr6:168325457-168325729(+)$1	1	22	25	8.9999
)))	chr11:74716348-74716599(+)$1	1	28	31	8.9999
)))	chr4:25769096-25769343(-)$1	1	16	19	8.9999
((.	chr3:197574166-197574423(+)$1	1	5	8	8.9999
)).	chr3:9965804-9966049(+)$1	1	47	50	8.9999
(((	chr17:80053206-80053452(-)$1	1	137	140	8.9999
..(	chr9:131750216-131750473(+)$1	1	7	10	8.9999
(((	chr18:2729170-2729421(+)$1	1	18	21	8.9999
...	chr6:15487425-15487685(+)$1	1	14	17	8.9999
(..	chr1:155883999-155884258(-)$1	1	7	10	8.9999
((.	chr11:43467372-43467622(+)$1	1	9	12	8.9999
.))	chr12:116412983-116413257(-)$1	1	22	25	8.9999
.((	chr2:118860660-118860914(+)$1	1	41	44	8.9999
(((	chr20:42087687-42087933(+)$1	1	38	41	8.9999
...	chr3:140675264-140675527(+)$1	1	59	62	8.9999
(((	chr1:155883852-155884101(-)$1	1	8	11	8.9999
)))	chr6:143486107-143486379(+)$1	1	76	79	8.9999
(((	chr11:73429776-73430052(-)$1	1	0	3	8.9999
(((	chr8:124361504-124361783(-)$1	1	40	43	8.9999
...	chr2:24086271-24086531(-)$1	1	61	64	8.9999
.))	chr1:201824800-201825045(+)$1	1	111	114	8.9999
.))	chr5:10386993-10387246(+)$1	1	48	51	8.9999
((.	chr16:23424750-23425035(-)$1	1	115	118	8.9999
...	chr17:56083205-56083439(-)$1	1	57	60	8.9999
...	chr1:65897372-65897635(+)$1	1	71	74	8.9999
((.	chr16:21629076-21629332(+)$1	1	4	7	8.9999
)))	chr1:207966752-207967001(+)$1	1	34	37	8.9999
(((	chr7:131163275-131163531(+)$1	1	11	14	8.9999
..(	chr4:184633641-184633897(+)$1	1	131	134	8.9999
...	chr12:116443680-116443912(-)$1	1	36	39	8.9999
(..	chr7:158723040-158723297(+)$1	1	20	23	8.9999
)))	chr3:195789664-195789922(-)$1	1	30	33	8.9999
(((	chr2:70454801-70455083(-)$1	1	151	154	8.9999
(((	chr1:3807473-3807731(-)$1	1	26	29	8.9999
)))	chr3:43753111-43753365(+)$1	1	46	49	8.9999
...	chr19:19767809-19768062(-)$1	1	133	136	8.9999
...	chr8:103358482-103358734(-)$1	1	17	20	8.9999
(((	chr3:100025173-100025424(+)$1	1	18	21	8.9999
.((	chr6:109697169-109697418(-)$1	1	0	3	8.9999
(((	chr1:160208395-160208655(-)$1	1	34	37	8.9999
(..	chr19:6416743-6416995(-)$1	1	16	19	8.9999
(..	chr12:102406826-102407078(-)$1	1	31	34	8.9999
.((	chr1:226258948-226259184(+)$1	1	111	114	8.9999
..)	chr6:112397199-112397463(-)$1	1	12	15	8.9999
(.(	chr7:98528137-98528398(+)$1	1	6	9	8.9999
((.	chr2:135703561-135703821(+)$1	1	24	27	8.9999
.((	chr17:56082267-56082525(-)$1	1	2	5	8.9999
.((	chr11:47752984-47753219(-)$1	1	12	15	8.9999
((.	chr7:140482813-140483078(-)$1	1	62	65	8.9999
((.	chr22:45726365-45726634(+)$1	1	6	9	8.9999
...	chr2:230670458-230670712(-)$1	1	9	12	8.9999
.((	chr16:88783486-88783728(-)$1	1	0	3	8.9999
(((	chr12:57909768-57910046(+)$1	1	7	10	8.9999
..(	chr18:12971034-12971295(+)$1	1	8	11	8.9999
.((	chr3:43743598-43743838(+)$1	1	3	6	8.9999
...	chr15:64041840-64042098(-)$1	1	166	169	8.9999
((.	chr3:42672553-42672816(+)$1	1	30	33	8.9999
(((	chrX:123695524-123695770(-)$1	1	64	67	8.9999
)).	chr17:40632569-40632842(+)$1	1	84	87	8.9999
.((	chr12:123078727-123078976(+)$1	1	22	25	8.9999
...	chr7:26237329-26237598(-)$1	1	2	5	8.9999
((.	chr20:33334579-33334839(-)$1	1	143	146	8.9999
(((	chr6:31711564-31711794(+)$1	1	6	9	8.9999
...	chr3:38539012-38539278(+)$1	1	195	198	8.9999
)))	chr18:12986719-12987043(+)$1	1	249	252	8.9999
.((	chr9:128094096-128094359(+)$1	1	1	4	8.9999
.((	chr11:9309216-9309455(-)$1	1	3	6	8.9999
.((	chr12:62954555-62954819(+)$1	1	1	4	8.9999
(..	chr10:70496525-70496778(+)$1	1	6	9	8.9999
.))	chr1:179993454-179993705(+)$1	1	13	16	8.9999
..(	chr2:20494111-20494413(-)$1	1	59	62	8.9999
...	chr2:234178535-234178780(+)$1	1	13	16	8.9999
(((	chr13:39600385-39600651(-)$1	1	7	10	8.9999
((.	chr14:31642485-31642750(-)$1	1	33	36	8.9999
((.	chr14:23794344-23794592(+)$1	1	61	64	8.9999
)).	chr6:47544153-47544418(+)$1	1	194	197	8.9999
(((	chr4:169923204-169923466(-)$1	1	1	4	8.9999
(((	chr6:32945774-32946051(+)$1	1	23	26	8.9999
(((	chr4:68374692-68374941(-)$1	1	62	65	8.9999
.((	chr10:103567517-103567770(-)$1	1	2	5	8.9999

#PSSM
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	
A : 0.91	a : 0.08	

#score	845.9999999999998
#seq	94
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_transcript_m2_run1.nuc.txt

#NT
CAG	chr3:9775993-9776227(+)$1	234	29	32	9.0000
cag	chr21:15470481-15470840(+)$1	359	101	104	9.0000
CAG	chr9:132642448-132642653(+)$1	205	26	29	9.0000
CAG	chr12:109039552-109039776(-)$1	224	4	7	9.0000
CAG	chr2:96950075-96950305(-)$1	230	9	12	9.0000
CAG	chr19:9794160-9794373(-)$1	213	96	99	9.0000
CAG	chr11:46450196-46450426(-)$1	230	21	24	9.0000
CAG	chr6:35542093-35542334(-)$1	241	4	7	9.0000
CAG	chr9:130697712-130697962(-)$1	250	8	11	9.0000
CAG	chr16:89627565-89627780(+)$1	215	66	69	9.0000
CAG	chr7:75511074-75511335(+)$1	261	44	47	9.0000
CAG	chr11:95560991-95561208(+)$1	217	23	26	9.0000
CAG	chr3:33910939-33911207(+)$1	268	50	53	9.0000
CAG	chr16:450130-450364(+)$1	234	15	18	9.0000
CAG	chr5:145508137-145508365(-)$1	228	41	44	9.0000
CAG	chr19:39336494-39336709(-)$1	215	50	53	9.0000
CAG	chrX:71494858-71495062(-)$1	204	59	62	9.0000
CAG	chr19:49120955-49121163(-)$1	208	26	29	9.0000
CAG	chr22:40750150-40750402(+)$1	252	106	109	9.0000
CAG	chrX:153608496-153608715(+)$1	219	8	11	9.0000
CAG	chr11:61583950-61584158(-)$1	208	6	9	9.0000
CAG	chr11:108368788-108369032(-)$1	244	19	22	9.0000
cag	chr5:110463187-110463432(+)$1	245	0	3	9.0000
CAG	chr5:180669158-180669368(-)$1	210	51	54	9.0000
CAG	chr16:28856171-28856376(-)$1	205	10	13	9.0000
CAG	chr2:25016000-25016248(-)$1	248	37	40	9.0000
CAG	chr1:6683794-6684043(+)$1	249	10	13	9.0000
CAG	chr9:86292591-86292891(-)$1	300	12	15	9.0000
CAG	chr1:38061331-38061577(-)$1	246	61	64	9.0000
CAG	chr18:673007-673229(+)$1	222	21	24	9.0000
CAG	chr17:46136788-46137081(+)$1	293	20	23	9.0000
CAG	chr11:118959244-118959457(+)$1	213	8	11	9.0000
CAG	chr1:180010185-180010437(+)$1	252	93	96	9.0000
CAG	chr18:669070-669273(+)$1	203	7	10	9.0000
CAG	chr6:134301141-134301392(+)$1	251	75	78	9.0000
cAG	chr2:101869576-101869861(+)$1	285	26	29	9.0000
CAG	chrX:69354377-69354604(+)$1	227	51	54	9.0000
CAG	chr11:32623242-32623451(+)$1	209	62	65	9.0000
CAG	chr10:135184033-135184269(-)$1	236	5	8	9.0000
CAG	chr8:145009097-145009352(-)$1	255	35	38	9.0000
CAG	chr17:42397340-42397569(-)$1	229	3	6	9.0000
CAG	chr9:32407304-32407527(+)$1	223	28	31	9.0000
CAG	chr5:72798664-72798899(+)$1	235	40	43	9.0000
CAG	chr17:7306545-7306798(-)$1	253	30	33	9.0000
CAG	chr15:66792293-66792498(-)$1	205	93	96	9.0000
CAG	chr8:99057159-99057365(-)$1	206	7	10	9.0000
CAG	chr22:38258938-38259145(+)$1	207	34	37	9.0000
CAG	chr17:1576705-1576933(-)$1	228	7	10	9.0000
CAG	chr20:54942795-54943040(+)$1	245	36	39	9.0000
CAG	chr7:56121961-56122187(+)$1	226	97	100	9.0000
CAG	chr12:98941318-98941587(+)$1	269	29	32	9.0000
CAG	chr17:36916592-36916804(+)$1	212	88	91	9.0000
CAG	chrX:118604235-118604437(+)$1	202	17	20	9.0000
CAG	chr2:211297339-211297608(-)$1	269	45	48	9.0000
CAG	chr10:103917185-103917411(+)$1	226	44	47	9.0000
CAG	chr8:42263230-42263478(+)$1	248	5	8	9.0000
CAG	chr16:2226025-2226260(+)$1	235	21	24	9.0000
CAG	chr6:143816862-143817066(-)$1	204	79	82	9.0000
CAG	chr7:131083955-131084204(+)$1	249	53	56	9.0000
CAG	chr18:43667086-43667295(-)$1	209	112	115	9.0000
CAG	chr7:150816976-150817225(+)$1	249	3	6	9.0000
CAG	chr5:149825094-149825298(-)$1	204	75	78	9.0000
CAG	chrX:118603683-118603887(+)$1	204	21	24	9.0000
CAG	chr20:62152598-62152802(+)$1	204	35	38	9.0000
CAG	chr11:34121057-34121287(+)$1	230	10	13	9.0000
CAG	chr15:69709675-69709935(+)$1	260	43	46	9.0000
CAG	chr5:138269504-138269751(+)$1	247	10	13	9.0000
CAG	chrX:118603629-118603835(+)$1	206	5	8	9.0000
CAG	chr18:34385289-34385542(-)$1	253	6	9	9.0000
cag	chr13:29252072-29252310(+)$1	238	34	37	9.0000
CAG	chr2:3625214-3625430(+)$1	216	10	13	9.0000
CAG	chr5:175782599-175782823(-)$1	224	31	34	9.0000
CAG	chr3:15106475-15106711(-)$1	236	61	64	9.0000
CAG	chr5:145533407-145533640(-)$1	233	12	15	9.0000
CAG	chr22:42070844-42071069(-)$1	225	4	7	9.0000
CAG	chr7:13911693-13911915(+)$1	222	7	10	9.0000
CAG	chr21:30315482-30315753(-)$1	271	52	55	9.0000
CAG	chr12:56623047-56623322(+)$1	275	35	38	9.0000
CAG	chr19:1390768-1390990(+)$1	222	98	101	9.0000
CAG	chr14:68117968-68118273(-)$1	305	162	165	9.0000
CAG	chrX:152961633-152961849(+)$1	216	111	114	9.0000
cag	chr20:391066-391415(+)$1	349	16	19	9.0000
CAG	chr11:904610-904862(-)$1	252	0	3	9.0000
CAG	chr17:1554932-1555171(-)$1	239	18	21	9.0000
CAG	chr19:3578700-3578923(+)$1	223	39	42	9.0000
CAG	chr9:139399938-139400213(-)$1	275	15	18	9.0000
CAG	chr3:193332498-193332794(+)$1	296	10	13	9.0000
CAG	chr10:102122359-102122579(+)$1	220	3	6	9.0000
CAG	chr12:56669678-56669929(-)$1	251	24	27	9.0000
CAG	chr20:47691922-47692127(+)$1	205	4	7	9.0000
CAG	chr10:35854889-35855119(+)$1	230	2	5	9.0000
CAG	chr12:54854127-54854345(-)$1	218	87	90	9.0000
CAG	chr22:41564353-41564636(+)$1	283	55	58	9.0000
CAG	chr17:73131625-73131866(-)$1	241	15	18	9.0000
CAG	chr3:183896609-183896817(+)$1	208	8	11	9.0000
CAG	chr5:80784971-80785186(-)$1	215	115	118	9.0000
CAG	chr19:42365088-42365294(+)$1	206	1	4	9.0000
CAG	chr17:80040787-80040993(-)$1	206	24	27	9.0000
CAG	chr2:61712857-61713073(-)$1	216	10	13	9.0000

#otherMatches

#Struct PSSM
EEE	chr15:41572200-41572456(+)$1	256	15	18	9.0000
ppp	chr3:9775993-9776227(+)$1	234	29	32	9.0000
:::	chr21:15470481-15470840(+)$1	359	101	104	9.0000
een	chr9:132642448-132642653(+)$1	205	26	29	9.0000
E{C	chr12:109039552-109039776(-)$1	224	4	7	9.0000
ddd	chr2:96950075-96950305(-)$1	230	9	12	9.0000
ff2	chr19:9794160-9794373(-)$1	213	96	99	9.0000
ddd	chr11:46450196-46450426(-)$1	230	21	24	9.0000
::F	chr6:35542093-35542334(-)$1	241	4	7	9.0000
ppp	chr9:130697712-130697962(-)$1	250	8	11	9.0000
ncc	chr16:89627565-89627780(+)$1	215	66	69	9.0000
f:F	chr7:75511074-75511335(+)$1	261	44	47	9.0000
ttt	chr11:95560991-95561208(+)$1	217	23	26	9.0000
EEE	chr3:33910939-33911207(+)$1	268	50	53	9.0000
:::	chr16:450130-450364(+)$1	234	15	18	9.0000
HHH	chr5:145508137-145508365(-)$1	228	41	44	9.0000
b[c	chr19:39336494-39336709(-)$1	215	50	53	9.0000
::E	chrX:71494858-71495062(-)$1	204	59	62	9.0000
mmc	chr19:49120955-49121163(-)$1	208	26	29	9.0000
cdd	chr22:40750150-40750402(+)$1	252	106	109	9.0000
::f	chrX:153608496-153608715(+)$1	219	8	11	9.0000
C{H	chr11:61583950-61584158(-)$1	208	6	9	9.0000
mee	chr11:108368788-108369032(-)$1	244	19	22	9.0000
:::	chr5:110463187-110463432(+)$1	245	0	3	9.0000
e!!	chr5:180669158-180669368(-)$1	210	51	54	9.0000
:::	chr16:28856171-28856376(-)$1	205	10	13	9.0000
I::	chr2:25016000-25016248(-)$1	248	37	40	9.0000
mdd	chr1:6683794-6684043(+)$1	249	10	13	9.0000
bb[	chr9:86292591-86292891(-)$1	300	12	15	9.0000
eee	chr1:38061331-38061577(-)$1	246	61	64	9.0000
III	chr18:673007-673229(+)$1	222	21	24	9.0000
ccc	chr17:46136788-46137081(+)$1	293	20	23	9.0000
hhh	chr11:118959244-118959457(+)$1	213	8	11	9.0000
22b	chr1:180010185-180010437(+)$1	252	93	96	9.0000
:::	chr18:669070-669273(+)$1	203	7	10	9.0000
cc]	chr6:134301141-134301392(+)$1	251	75	78	9.0000
KKB	chr2:101869576-101869861(+)$1	285	26	29	9.0000
ccc	chrX:69354377-69354604(+)$1	227	51	54	9.0000
444	chr11:32623242-32623451(+)$1	209	62	65	9.0000
[dd	chr10:135184033-135184269(-)$1	236	5	8	9.0000
ccc	chr8:145009097-145009352(-)$1	255	35	38	9.0000
::D	chr17:42397340-42397569(-)$1	229	3	6	9.0000
:hh	chr9:32407304-32407527(+)$1	223	28	31	9.0000
FFF	chr5:72798664-72798899(+)$1	235	40	43	9.0000
iii	chr17:7306545-7306798(-)$1	253	30	33	9.0000
lll	chr15:66792293-66792498(-)$1	205	93	96	9.0000
KKF	chr8:99057159-99057365(-)$1	206	7	10	9.0000
ggg	chr22:38258938-38259145(+)$1	207	34	37	9.0000
ddd	chr17:1576705-1576933(-)$1	228	7	10	9.0000
ggg	chr20:54942795-54943040(+)$1	245	36	39	9.0000
eee	chr7:56121961-56122187(+)$1	226	97	100	9.0000
odd	chr12:98941318-98941587(+)$1	269	29	32	9.0000
::=	chr17:36916592-36916804(+)$1	212	88	91	9.0000
FFF	chrX:118604235-118604437(+)$1	202	17	20	9.0000
:::	chr2:211297339-211297608(-)$1	269	45	48	9.0000
"""	chr10:103917185-103917411(+)$1	226	44	47	9.0000
fcc	chr8:42263230-42263478(+)$1	248	5	8	9.0000
lcc	chr16:2226025-2226260(+)$1	235	21	24	9.0000
eee	chr6:143816862-143817066(-)$1	204	79	82	9.0000
[bb	chr7:131083955-131084204(+)$1	249	53	56	9.0000
ddd	chr18:43667086-43667295(-)$1	209	112	115	9.0000
CKK	chr7:150816976-150817225(+)$1	249	3	6	9.0000
fff	chr5:149825094-149825298(-)$1	204	75	78	9.0000
::f	chrX:118603683-118603887(+)$1	204	21	24	9.0000
+++	chr20:62152598-62152802(+)$1	204	35	38	9.0000
:::	chr11:34121057-34121287(+)$1	230	10	13	9.0000
qcc	chr15:69709675-69709935(+)$1	260	43	46	9.0000
ccd	chr5:138269504-138269751(+)$1	247	10	13	9.0000
CC{	chrX:118603629-118603835(+)$1	206	5	8	9.0000
[ee	chr18:34385289-34385542(-)$1	253	6	9	9.0000
===	chr13:29252072-29252310(+)$1	238	34	37	9.0000
d:G	chr2:3625214-3625430(+)$1	216	10	13	9.0000
BBL	chr5:175782599-175782823(-)$1	224	31	34	9.0000
22f	chr3:15106475-15106711(-)$1	236	61	64	9.0000
mme	chr5:145533407-145533640(-)$1	233	12	15	9.0000
ggg	chr22:42070844-42071069(-)$1	225	4	7	9.0000
:::	chr7:13911693-13911915(+)$1	222	7	10	9.0000
qdd	chr21:30315482-30315753(-)$1	271	52	55	9.0000
mmm	chr12:56623047-56623322(+)$1	275	35	38	9.0000
22g	chr19:1390768-1390990(+)$1	222	98	101	9.0000
^^^	chr14:68117968-68118273(-)$1	305	162	165	9.0000
hhh	chrX:152961633-152961849(+)$1	216	111	114	9.0000
d""	chr20:391066-391415(+)$1	349	16	19	9.0000
HHH	chr11:904610-904862(-)$1	252	0	3	9.0000
eee	chr17:1554932-1555171(-)$1	239	18	21	9.0000
e^^	chr19:3578700-3578923(+)$1	223	39	42	9.0000
LLD	chr9:139399938-139400213(-)$1	275	15	18	9.0000
:HH	chr3:193332498-193332794(+)$1	296	10	13	9.0000
::g	chr10:102122359-102122579(+)$1	220	3	6	9.0000
:::	chr12:56669678-56669929(-)$1	251	24	27	9.0000
ggg	chr20:47691922-47692127(+)$1	205	4	7	9.0000
fff	chr10:35854889-35855119(+)$1	230	2	5	9.0000
22b	chr12:54854127-54854345(-)$1	218	87	90	9.0000
ccc	chr22:41564353-41564636(+)$1	283	55	58	9.0000
euu	chr17:73131625-73131866(-)$1	241	15	18	9.0000
:dd	chr3:183896609-183896817(+)$1	208	8	11	9.0000
mee	chr5:80784971-80785186(-)$1	215	115	118	9.0000
fff	chr19:42365088-42365294(+)$1	206	1	4	9.0000
eeb	chr17:80040787-80040993(-)$1	206	24	27	9.0000
EEE	chr2:61712857-61713073(-)$1	216	10	13	9.0000

#DB
(((	chr15:41572200-41572456(+)$1	1	15	18	9.0000
...	chr3:9775993-9776227(+)$1	1	29	32	9.0000
...	chr21:15470481-15470840(+)$1	1	101	104	9.0000
((.	chr9:132642448-132642653(+)$1	1	26	29	9.0000
(.(	chr12:109039552-109039776(-)$1	1	4	7	9.0000
(((	chr2:96950075-96950305(-)$1	1	9	12	9.0000
)).	chr19:9794160-9794373(-)$1	1	96	99	9.0000
(((	chr11:46450196-46450426(-)$1	1	21	24	9.0000
..(	chr6:35542093-35542334(-)$1	1	4	7	9.0000
...	chr9:130697712-130697962(-)$1	1	8	11	9.0000
.))	chr16:89627565-89627780(+)$1	1	66	69	9.0000
).(	chr7:75511074-75511335(+)$1	1	44	47	9.0000
...	chr11:95560991-95561208(+)$1	1	23	26	9.0000
(((	chr3:33910939-33911207(+)$1	1	50	53	9.0000
...	chr16:450130-450364(+)$1	1	15	18	9.0000
(((	chr5:145508137-145508365(-)$1	1	41	44	9.0000
(.(	chr19:39336494-39336709(-)$1	1	50	53	9.0000
..(	chrX:71494858-71495062(-)$1	1	59	62	9.0000
..)	chr19:49120955-49121163(-)$1	1	26	29	9.0000
(((	chr22:40750150-40750402(+)$1	1	106	109	9.0000
..(	chrX:153608496-153608715(+)$1	1	8	11	9.0000
(.(	chr11:61583950-61584158(-)$1	1	6	9	9.0000
.))	chr11:108368788-108369032(-)$1	1	19	22	9.0000
...	chr5:110463187-110463432(+)$1	1	0	3	9.0000
(..	chr5:180669158-180669368(-)$1	1	51	54	9.0000
...	chr16:28856171-28856376(-)$1	1	10	13	9.0000
(..	chr2:25016000-25016248(-)$1	1	37	40	9.0000
.))	chr1:6683794-6684043(+)$1	1	10	13	9.0000
((.	chr9:86292591-86292891(-)$1	1	12	15	9.0000
(((	chr1:38061331-38061577(-)$1	1	61	64	9.0000
(((	chr18:673007-673229(+)$1	1	21	24	9.0000
)))	chr17:46136788-46137081(+)$1	1	20	23	9.0000
(((	chr11:118959244-118959457(+)$1	1	8	11	9.0000
..)	chr1:180010185-180010437(+)$1	1	93	96	9.0000
...	chr18:669070-669273(+)$1	1	7	10	9.0000
)).	chr6:134301141-134301392(+)$1	1	75	78	9.0000
..(	chr2:101869576-101869861(+)$1	1	26	29	9.0000
)))	chrX:69354377-69354604(+)$1	1	51	54	9.0000
...	chr11:32623242-32623451(+)$1	1	62	65	9.0000
.((	chr10:135184033-135184269(-)$1	1	5	8	9.0000
)))	chr8:145009097-145009352(-)$1	1	35	38	9.0000
..(	chr17:42397340-42397569(-)$1	1	3	6	9.0000
.((	chr9:32407304-32407527(+)$1	1	28	31	9.0000
(((	chr5:72798664-72798899(+)$1	1	40	43	9.0000
)))	chr17:7306545-7306798(-)$1	1	30	33	9.0000
...	chr15:66792293-66792498(-)$1	1	93	96	9.0000
..(	chr8:99057159-99057365(-)$1	1	7	10	9.0000
(((	chr22:38258938-38259145(+)$1	1	34	37	9.0000
(((	chr17:1576705-1576933(-)$1	1	7	10	9.0000
(((	chr20:54942795-54943040(+)$1	1	36	39	9.0000
)))	chr7:56121961-56122187(+)$1	1	97	100	9.0000
.))	chr12:98941318-98941587(+)$1	1	29	32	9.0000
..(	chr17:36916592-36916804(+)$1	1	88	91	9.0000
(((	chrX:118604235-118604437(+)$1	1	17	20	9.0000
...	chr2:211297339-211297608(-)$1	1	45	48	9.0000
...	chr10:103917185-103917411(+)$1	1	44	47	9.0000
(((	chr8:42263230-42263478(+)$1	1	5	8	9.0000
.))	chr16:2226025-2226260(+)$1	1	21	24	9.0000
(((	chr6:143816862-143817066(-)$1	1	79	82	9.0000
.((	chr7:131083955-131084204(+)$1	1	53	56	9.0000
)))	chr18:43667086-43667295(-)$1	1	112	115	9.0000
(..	chr7:150816976-150817225(+)$1	1	3	6	9.0000
(((	chr5:149825094-149825298(-)$1	1	75	78	9.0000
..(	chrX:118603683-118603887(+)$1	1	21	24	9.0000
...	chr20:62152598-62152802(+)$1	1	35	38	9.0000
...	chr11:34121057-34121287(+)$1	1	10	13	9.0000
.))	chr15:69709675-69709935(+)$1	1	43	46	9.0000
(((	chr5:138269504-138269751(+)$1	1	10	13	9.0000
((.	chrX:118603629-118603835(+)$1	1	5	8	9.0000
.((	chr18:34385289-34385542(-)$1	1	6	9	9.0000
(((	chr13:29252072-29252310(+)$1	1	34	37	9.0000
).(	chr2:3625214-3625430(+)$1	1	10	13	9.0000
((.	chr5:175782599-175782823(-)$1	1	31	34	9.0000
..)	chr3:15106475-15106711(-)$1	1	61	64	9.0000
..)	chr5:145533407-145533640(-)$1	1	12	15	9.0000
(((	chr22:42070844-42071069(-)$1	1	4	7	9.0000
...	chr7:13911693-13911915(+)$1	1	7	10	9.0000
.))	chr21:30315482-30315753(-)$1	1	52	55	9.0000
...	chr12:56623047-56623322(+)$1	1	35	38	9.0000
..)	chr19:1390768-1390990(+)$1	1	98	101	9.0000
...	chr14:68117968-68118273(-)$1	1	162	165	9.0000
)))	chrX:152961633-152961849(+)$1	1	111	114	9.0000
(..	chr20:391066-391415(+)$1	1	16	19	9.0000
(((	chr11:904610-904862(-)$1	1	0	3	9.0000
(((	chr17:1554932-1555171(-)$1	1	18	21	9.0000
(..	chr19:3578700-3578923(+)$1	1	39	42	9.0000
..(	chr9:139399938-139400213(-)$1	1	15	18	9.0000
.((	chr3:193332498-193332794(+)$1	1	10	13	9.0000
..(	chr10:102122359-102122579(+)$1	1	3	6	9.0000
...	chr12:56669678-56669929(-)$1	1	24	27	9.0000
(((	chr20:47691922-47692127(+)$1	1	4	7	9.0000
(((	chr10:35854889-35855119(+)$1	1	2	5	9.0000
..)	chr12:54854127-54854345(-)$1	1	87	90	9.0000
(((	chr22:41564353-41564636(+)$1	1	55	58	9.0000
(..	chr17:73131625-73131866(-)$1	1	15	18	9.0000
.((	chr3:183896609-183896817(+)$1	1	8	11	9.0000
.))	chr5:80784971-80785186(-)$1	1	115	118	9.0000
(((	chr19:42365088-42365294(+)$1	1	1	4	9.0000
))(	chr17:80040787-80040993(-)$1	1	24	27	9.0000
(((	chr2:61712857-61713073(-)$1	1	10	13	9.0000

#PSSM
C : 0.95	c : 0.05	
A : 0.96	a : 0.04	
G : 0.96	g : 0.04	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_CDS_m1_run2.nuc.txt

#NT
CUG	chr2:216229604-216229808(-)$1	204	48	51	9.0000
CUG	chr15:62166977-62167238(-)$1	261	16	19	9.0000
CUG	chr10:88813013-88813262(-)$1	249	3	6	9.0000
CUG	chr9:131339428-131339655(+)$1	227	32	35	9.0000
CUG	chr5:162866263-162866538(+)$1	275	11	14	9.0000
CUG	chr16:28856617-28856867(-)$1	250	13	16	9.0000
CUG	chr15:44060680-44060895(+)$1	215	22	25	9.0000
CUG	chr4:74285201-74285417(+)$1	216	71	74	9.0000
CUG	chr2:220092544-220092789(-)$1	245	59	62	9.0000
CUG	chr22:21138346-21138596(+)$1	250	41	44	9.0000
CUG	chr2:231742066-231742349(+)$1	283	7	10	9.0000
CUG	chr2:74597324-74597573(-)$1	249	3	6	9.0000
CUG	chr17:79915632-79915884(-)$1	252	24	27	9.0000
CUG	chr12:9245960-9246189(-)$1	229	46	49	9.0000
CUG	chr16:11976770-11977013(-)$1	243	7	10	9.0000
CUG	chr14:31641060-31641265(-)$1	205	33	36	9.0000
CUG	chr2:187501693-187501932(+)$1	239	43	46	9.0000
CUG	chr3:52834975-52835239(+)$1	264	76	79	9.0000
CUG	chr17:79813287-79813533(-)$1	246	34	37	9.0000
CUG	chr3:37368642-37368860(+)$1	218	82	85	9.0000
CUG	chr2:54853064-54853315(+)$1	251	26	29	9.0000
CUG	chr7:107621063-107621311(-)$1	248	18	21	9.0000
CUG	chr2:216229587-216229796(-)$1	209	36	39	9.0000
CUG	chr17:80020698-80020950(-)$1	252	1	4	9.0000
CUG	chr4:155531118-155531335(-)$1	217	32	35	9.0000
CUG	chr11:121384833-121385077(+)$1	244	123	126	9.0000
cug	chr1:229654502-229654723(-)$1	221	40	43	9.0000
CUG	chr7:103301791-103302019(-)$1	228	62	65	9.0000
CUG	chr19:49119939-49120142(-)$1	203	10	13	9.0000
CUG	chr19:6690539-6690741(-)$1	202	63	66	9.0000
CUG	chr15:55970024-55970269(-)$1	245	53	56	9.0000
CUG	chr19:42373146-42373354(+)$1	208	100	103	9.0000
CUG	chr12:46321173-46321442(-)$1	269	20	23	9.0000
CUG	chr2:21238141-21238344(-)$1	203	14	17	9.0000
CUG	chr17:4925492-4925777(+)$1	285	13	16	9.0000
CUG	chr19:42373159-42373385(+)$1	226	87	90	9.0000
CUG	chr17:79914826-79915039(-)$1	213	14	17	9.0000
CUG	chr15:60643325-60643550(-)$1	225	7	10	9.0000
CUG	chr20:17601278-17601514(-)$1	236	37	40	9.0000
CUG	chr1:229657266-229657483(-)$1	217	136	139	9.0000
CUG	chr5:126889448-126889721(+)$1	273	25	28	9.0000
CUG	chrX:153586712-153586914(-)$1	202	11	14	9.0000
CUG	chr10:73587672-73587912(-)$1	240	21	24	9.0000
CUG	chr7:103301748-103301991(-)$1	243	34	37	9.0000
CUG	chr5:1473995-1474273(-)$1	278	76	79	9.0000
CUG	chr11:62290651-62290928(-)$1	277	24	27	9.0000
CUG	chr11:320629-320871(-)$1	242	9	12	9.0000
CUG	chr2:183841519-183841780(-)$1	261	185	188	9.0000
CUG	chr11:120319727-120320002(+)$1	275	52	55	9.0000
CUG	chr17:37881534-37881756(+)$1	222	33	36	9.0000
CUG	chr5:179150565-179150779(+)$1	214	16	19	9.0000
CUG	chr8:99054771-99054974(-)$1	203	9	12	9.0000
CUG	chr1:52301704-52301971(-)$1	267	88	91	9.0000
CUG	chr17:42429761-42430039(+)$1	278	15	18	9.0000
CUG	chr7:97820885-97821142(+)$1	257	14	17	9.0000
CUG	chr1:150941395-150941648(-)$1	253	5	8	9.0000
CUG	chr13:21548909-21549169(-)$1	260	90	93	9.0000
CUG	chr19:4501196-4501432(+)$1	236	117	120	9.0000
CUG	chr4:155507170-155507428(-)$1	258	10	13	9.0000
CUG	chr2:21252669-21252871(-)$1	202	18	21	9.0000
CUG	chr12:57553636-57553890(+)$1	254	2	5	9.0000
CUG	chr2:176043822-176044047(-)$1	225	24	27	9.0000
CUG	chr20:17616137-17616365(-)$1	228	6	9	9.0000
CUG	chr12:9258986-9259204(-)$1	218	17	20	9.0000
CUG	chr2:96963923-96964196(-)$1	273	45	48	9.0000
CUG	chr10:125805369-125805622(-)$1	253	23	26	9.0000
CUG	chr7:107615588-107615817(-)$1	229	13	16	9.0000
CUG	chr7:95040926-95041174(-)$1	248	1	4	9.0000
CUG	chr8:38884094-38884307(+)$1	213	38	41	9.0000
CUG	chr19:2767475-2767709(-)$1	234	10	13	9.0000
CUG	chr17:1564803-1565013(-)$1	210	61	64	9.0000
CUG	chrX:153586593-153586824(-)$1	231	26	29	9.0000
CUG	chr9:124065204-124065434(+)$1	230	37	40	9.0000
CUG	chr17:61833520-61833781(-)$1	261	99	102	9.0000
CUG	chr12:131357537-131357761(+)$1	224	111	114	9.0000
CUG	chr20:3520767-3520998(+)$1	231	27	30	9.0000
CUG	chr2:21252531-21252744(-)$1	213	23	26	9.0000
CUG	chr8:99054777-99055007(-)$1	230	9	12	9.0000
CUG	chr16:24570840-24571109(+)$1	269	93	96	9.0000
CUG	chr12:102159803-102160080(-)$1	277	50	53	9.0000
CUG	chr2:112779042-112779259(+)$1	217	54	57	9.0000
CUG	chr11:121476005-121476261(+)$1	256	1	4	9.0000
CUG	chr17:75199619-75199841(+)$1	222	1	4	9.0000
CUG	chr10:135179435-135179696(-)$1	261	14	17	9.0000
CUG	chrX:43661348-43661609(-)$1	261	89	92	9.0000
CUG	chr3:141463988-141464279(+)$1	291	16	19	9.0000
CUG	chr9:131377993-131378221(+)$1	228	61	64	9.0000
CUG	chr8:145640256-145640588(-)$1	332	36	39	9.0000
CUG	chr1:94933435-94933649(+)$1	214	25	28	9.0000
CUG	chr9:139113553-139113800(-)$1	247	25	28	9.0000
CUG	chrX:135957316-135957532(-)$1	216	132	135	9.0000
CUG	chr1:64117290-64117520(+)$1	230	7	10	9.0000
CUG	chr22:19035870-19036146(-)$1	276	67	70	9.0000
CUG	chr16:27518153-27518440(-)$1	287	10	13	9.0000
CUG	chr1:155230020-155230257(-)$1	237	8	11	9.0000
CUG	chr9:108120524-108120741(+)$1	217	9	12	9.0000
CUG	chr3:133482946-133483171(+)$1	225	13	16	9.0000
CUG	chr20:17600863-17601087(-)$1	224	44	47	9.0000
CUG	chr2:201796005-201796255(-)$1	250	34	37	9.0000

#otherMatches

#Struct PSSM
EEE	chr16:88697481-88697777(+)$1	296	37	40	9.0000
EEE	chr2:216229604-216229808(-)$1	204	48	51	9.0000
FF:	chr15:62166977-62167238(-)$1	261	16	19	9.0000
GGG	chr10:88813013-88813262(-)$1	249	3	6	9.0000
uuu	chr9:131339428-131339655(+)$1	227	32	35	9.0000
EEK	chr5:162866263-162866538(+)$1	275	11	14	9.0000
===	chr16:28856617-28856867(-)$1	250	13	16	9.0000
fff	chr15:44060680-44060895(+)$1	215	22	25	9.0000
{DD	chr4:74285201-74285417(+)$1	216	71	74	9.0000
ddd	chr2:220092544-220092789(-)$1	245	59	62	9.0000
!cc	chr22:21138346-21138596(+)$1	250	41	44	9.0000
DDK	chr2:231742066-231742349(+)$1	283	7	10	9.0000
C{D	chr2:74597324-74597573(-)$1	249	3	6	9.0000
]dd	chr17:79915632-79915884(-)$1	252	24	27	9.0000
nnn	chr12:9245960-9246189(-)$1	229	46	49	9.0000
eee	chr16:11976770-11977013(-)$1	243	7	10	9.0000
ddd	chr14:31641060-31641265(-)$1	205	33	36	9.0000
EEE	chr2:187501693-187501932(+)$1	239	43	46	9.0000
ddd	chr3:52834975-52835239(+)$1	264	76	79	9.0000
eee	chr17:79813287-79813533(-)$1	246	34	37	9.0000
HHH	chr3:37368642-37368860(+)$1	218	82	85	9.0000
GGG	chr2:54853064-54853315(+)$1	251	26	29	9.0000
{FF	chr7:107621063-107621311(-)$1	248	18	21	9.0000
EEE	chr2:216229587-216229796(-)$1	209	36	39	9.0000
::d	chr17:80020698-80020950(-)$1	252	1	4	9.0000
ddq	chr4:155531118-155531335(-)$1	217	32	35	9.0000
fff	chr11:121384833-121385077(+)$1	244	123	126	9.0000
!!f	chr1:229654502-229654723(-)$1	221	40	43	9.0000
"""	chr7:103301791-103302019(-)$1	228	62	65	9.0000
DDD	chr19:49119939-49120142(-)$1	203	10	13	9.0000
]bb	chr19:6690539-6690741(-)$1	202	63	66	9.0000
EEE	chr15:55970024-55970269(-)$1	245	53	56	9.0000
ffl	chr19:42373146-42373354(+)$1	208	100	103	9.0000
::D	chr12:46321173-46321442(-)$1	269	20	23	9.0000
fff	chr2:21238141-21238344(-)$1	203	14	17	9.0000
ddd	chr17:4925492-4925777(+)$1	285	13	16	9.0000
d::	chr19:42373159-42373385(+)$1	226	87	90	9.0000
cc!	chr17:79914826-79915039(-)$1	213	14	17	9.0000
:::	chr15:60643325-60643550(-)$1	225	7	10	9.0000
ff[	chr20:17601278-17601514(-)$1	236	37	40	9.0000
eee	chr1:229657266-229657483(-)$1	217	136	139	9.0000
EEE	chr5:126889448-126889721(+)$1	273	25	28	9.0000
"ff	chrX:153586712-153586914(-)$1	202	11	14	9.0000
b[c	chr10:73587672-73587912(-)$1	240	21	24	9.0000
KDD	chr7:103301748-103301991(-)$1	243	34	37	9.0000
eee	chr5:1473995-1474273(-)$1	278	76	79	9.0000
DDK	chr11:62290651-62290928(-)$1	277	24	27	9.0000
ddd	chr11:320629-320871(-)$1	242	9	12	9.0000
FFF	chr2:183841519-183841780(-)$1	261	185	188	9.0000
dd%	chr11:120319727-120320002(+)$1	275	52	55	9.0000
DD{	chr17:37881534-37881756(+)$1	222	33	36	9.0000
g##	chr5:179150565-179150779(+)$1	214	16	19	9.0000
#ee	chr8:99054771-99054974(-)$1	203	9	12	9.0000
bb[	chr1:52301704-52301971(-)$1	267	88	91	9.0000
b&&	chr17:42429761-42430039(+)$1	278	15	18	9.0000
III	chr7:97820885-97821142(+)$1	257	14	17	9.0000
!!b	chr1:150941395-150941648(-)$1	253	5	8	9.0000
hhh	chr13:21548909-21549169(-)$1	260	90	93	9.0000
==:	chr19:4501196-4501432(+)$1	236	117	120	9.0000
CC:	chr4:155507170-155507428(-)$1	258	10	13	9.0000
{CC	chr2:21252669-21252871(-)$1	202	18	21	9.0000
bb"	chr12:57553636-57553890(+)$1	254	2	5	9.0000
cc[	chr2:176043822-176044047(-)$1	225	24	27	9.0000
hhh	chr20:17616137-17616365(-)$1	228	6	9	9.0000
fff	chr12:9258986-9259204(-)$1	218	17	20	9.0000
EEE	chr2:96963923-96964196(-)$1	273	45	48	9.0000
dd[	chr10:125805369-125805622(-)$1	253	23	26	9.0000
iii	chr7:107615588-107615817(-)$1	229	13	16	9.0000
:::	chr7:95040926-95041174(-)$1	248	1	4	9.0000
ggg	chr8:38884094-38884307(+)$1	213	38	41	9.0000
ppe	chr19:2767475-2767709(-)$1	234	10	13	9.0000
eee	chr17:1564803-1565013(-)$1	210	61	64	9.0000
ddc	chrX:153586593-153586824(-)$1	231	26	29	9.0000
CCC	chr9:124065204-124065434(+)$1	230	37	40	9.0000
ggg	chr17:61833520-61833781(-)$1	261	99	102	9.0000
bb:	chr12:131357537-131357761(+)$1	224	111	114	9.0000
off	chr20:3520767-3520998(+)$1	231	27	30	9.0000
MGG	chr2:21252531-21252744(-)$1	213	23	26	9.0000
OOD	chr8:99054777-99055007(-)$1	230	9	12	9.0000
!!c	chr16:24570840-24571109(+)$1	269	93	96	9.0000
ffl	chr12:102159803-102160080(-)$1	277	50	53	9.0000
dd8	chr2:112779042-112779259(+)$1	217	54	57	9.0000
ddd	chr11:121476005-121476261(+)$1	256	1	4	9.0000
FFF	chr17:75199619-75199841(+)$1	222	1	4	9.0000
fff	chr10:135179435-135179696(-)$1	261	14	17	9.0000
mmm	chrX:43661348-43661609(-)$1	261	89	92	9.0000
[bb	chr3:141463988-141464279(+)$1	291	16	19	9.0000
cc3	chr9:131377993-131378221(+)$1	228	61	64	9.0000
ooa	chr8:145640256-145640588(-)$1	332	36	39	9.0000
eee	chr1:94933435-94933649(+)$1	214	25	28	9.0000
eee	chr9:139113553-139113800(-)$1	247	25	28	9.0000
rrb	chrX:135957316-135957532(-)$1	216	132	135	9.0000
KCC	chr1:64117290-64117520(+)$1	230	7	10	9.0000
DDC	chr22:19035870-19036146(-)$1	276	67	70	9.0000
eee	chr16:27518153-27518440(-)$1	287	10	13	9.0000
lee	chr1:155230020-155230257(-)$1	237	8	11	9.0000
mmm	chr9:108120524-108120741(+)$1	217	9	12	9.0000
e%%	chr3:133482946-133483171(+)$1	225	13	16	9.0000
ddd	chr20:17600863-17601087(-)$1	224	44	47	9.0000
DDK	chr2:201796005-201796255(-)$1	250	34	37	9.0000

#DB
(((	chr16:88697481-88697777(+)$1	1	37	40	9.0000
(((	chr2:216229604-216229808(-)$1	1	48	51	9.0000
((.	chr15:62166977-62167238(-)$1	1	16	19	9.0000
(((	chr10:88813013-88813262(-)$1	1	3	6	9.0000
...	chr9:131339428-131339655(+)$1	1	32	35	9.0000
((.	chr5:162866263-162866538(+)$1	1	11	14	9.0000
(((	chr16:28856617-28856867(-)$1	1	13	16	9.0000
(((	chr15:44060680-44060895(+)$1	1	22	25	9.0000
.((	chr4:74285201-74285417(+)$1	1	71	74	9.0000
)))	chr2:220092544-220092789(-)$1	1	59	62	9.0000
.((	chr22:21138346-21138596(+)$1	1	41	44	9.0000
((.	chr2:231742066-231742349(+)$1	1	7	10	9.0000
(.(	chr2:74597324-74597573(-)$1	1	3	6	9.0000
.))	chr17:79915632-79915884(-)$1	1	24	27	9.0000
...	chr12:9245960-9246189(-)$1	1	46	49	9.0000
(((	chr16:11976770-11977013(-)$1	1	7	10	9.0000
(((	chr14:31641060-31641265(-)$1	1	33	36	9.0000
(((	chr2:187501693-187501932(+)$1	1	43	46	9.0000
)))	chr3:52834975-52835239(+)$1	1	76	79	9.0000
(((	chr17:79813287-79813533(-)$1	1	34	37	9.0000
(((	chr3:37368642-37368860(+)$1	1	82	85	9.0000
(((	chr2:54853064-54853315(+)$1	1	26	29	9.0000
.((	chr7:107621063-107621311(-)$1	1	18	21	9.0000
(((	chr2:216229587-216229796(-)$1	1	36	39	9.0000
..(	chr17:80020698-80020950(-)$1	1	1	4	9.0000
((.	chr4:155531118-155531335(-)$1	1	32	35	9.0000
(((	chr11:121384833-121385077(+)$1	1	123	126	9.0000
..(	chr1:229654502-229654723(-)$1	1	40	43	9.0000
...	chr7:103301791-103302019(-)$1	1	62	65	9.0000
(((	chr19:49119939-49120142(-)$1	1	10	13	9.0000
.))	chr19:6690539-6690741(-)$1	1	63	66	9.0000
(((	chr15:55970024-55970269(-)$1	1	53	56	9.0000
((.	chr19:42373146-42373354(+)$1	1	100	103	9.0000
..(	chr12:46321173-46321442(-)$1	1	20	23	9.0000
(((	chr2:21238141-21238344(-)$1	1	14	17	9.0000
(((	chr17:4925492-4925777(+)$1	1	13	16	9.0000
)..	chr19:42373159-42373385(+)$1	1	87	90	9.0000
((.	chr17:79914826-79915039(-)$1	1	14	17	9.0000
...	chr15:60643325-60643550(-)$1	1	7	10	9.0000
((.	chr20:17601278-17601514(-)$1	1	37	40	9.0000
(((	chr1:229657266-229657483(-)$1	1	136	139	9.0000
(((	chr5:126889448-126889721(+)$1	1	25	28	9.0000
.((	chrX:153586712-153586914(-)$1	1	11	14	9.0000
(.(	chr10:73587672-73587912(-)$1	1	21	24	9.0000
.((	chr7:103301748-103301991(-)$1	1	34	37	9.0000
)))	chr5:1473995-1474273(-)$1	1	76	79	9.0000
((.	chr11:62290651-62290928(-)$1	1	24	27	9.0000
(((	chr11:320629-320871(-)$1	1	9	12	9.0000
)))	chr2:183841519-183841780(-)$1	1	185	188	9.0000
((.	chr11:120319727-120320002(+)$1	1	52	55	9.0000
((.	chr17:37881534-37881756(+)$1	1	33	36	9.0000
(..	chr5:179150565-179150779(+)$1	1	16	19	9.0000
.((	chr8:99054771-99054974(-)$1	1	9	12	9.0000
((.	chr1:52301704-52301971(-)$1	1	88	91	9.0000
(..	chr17:42429761-42430039(+)$1	1	15	18	9.0000
(((	chr7:97820885-97821142(+)$1	1	14	17	9.0000
..(	chr1:150941395-150941648(-)$1	1	5	8	9.0000
(((	chr13:21548909-21549169(-)$1	1	90	93	9.0000
)).	chr19:4501196-4501432(+)$1	1	117	120	9.0000
((.	chr4:155507170-155507428(-)$1	1	10	13	9.0000
.((	chr2:21252669-21252871(-)$1	1	18	21	9.0000
((.	chr12:57553636-57553890(+)$1	1	2	5	9.0000
((.	chr2:176043822-176044047(-)$1	1	24	27	9.0000
(((	chr20:17616137-17616365(-)$1	1	6	9	9.0000
)))	chr12:9258986-9259204(-)$1	1	17	20	9.0000
(((	chr2:96963923-96964196(-)$1	1	45	48	9.0000
((.	chr10:125805369-125805622(-)$1	1	23	26	9.0000
(((	chr7:107615588-107615817(-)$1	1	13	16	9.0000
...	chr7:95040926-95041174(-)$1	1	1	4	9.0000
(((	chr8:38884094-38884307(+)$1	1	38	41	9.0000
..)	chr19:2767475-2767709(-)$1	1	10	13	9.0000
(((	chr17:1564803-1565013(-)$1	1	61	64	9.0000
(((	chrX:153586593-153586824(-)$1	1	26	29	9.0000
(((	chr9:124065204-124065434(+)$1	1	37	40	9.0000
(((	chr17:61833520-61833781(-)$1	1	99	102	9.0000
)).	chr12:131357537-131357761(+)$1	1	111	114	9.0000
.))	chr20:3520767-3520998(+)$1	1	27	30	9.0000
.((	chr2:21252531-21252744(-)$1	1	23	26	9.0000
..(	chr8:99054777-99055007(-)$1	1	9	12	9.0000
..(	chr16:24570840-24571109(+)$1	1	93	96	9.0000
((.	chr12:102159803-102160080(-)$1	1	50	53	9.0000
)).	chr2:112779042-112779259(+)$1	1	54	57	9.0000
(((	chr11:121476005-121476261(+)$1	1	1	4	9.0000
(((	chr17:75199619-75199841(+)$1	1	1	4	9.0000
(((	chr10:135179435-135179696(-)$1	1	14	17	9.0000
...	chrX:43661348-43661609(-)$1	1	89	92	9.0000
.((	chr3:141463988-141464279(+)$1	1	16	19	9.0000
)).	chr9:131377993-131378221(+)$1	1	61	64	9.0000
..)	chr8:145640256-145640588(-)$1	1	36	39	9.0000
(((	chr1:94933435-94933649(+)$1	1	25	28	9.0000
)))	chr9:139113553-139113800(-)$1	1	25	28	9.0000
..)	chrX:135957316-135957532(-)$1	1	132	135	9.0000
.((	chr1:64117290-64117520(+)$1	1	7	10	9.0000
(((	chr22:19035870-19036146(-)$1	1	67	70	9.0000
(((	chr16:27518153-27518440(-)$1	1	10	13	9.0000
.))	chr1:155230020-155230257(-)$1	1	8	11	9.0000
...	chr9:108120524-108120741(+)$1	1	9	12	9.0000
(..	chr3:133482946-133483171(+)$1	1	13	16	9.0000
)))	chr20:17600863-17601087(-)$1	1	44	47	9.0000
((.	chr2:201796005-201796255(-)$1	1	34	37	9.0000

#PSSM
C : 0.99	c : 0.01	
U : 0.99	u : 0.01	
G : 0.99	g : 0.01	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_transcript_m2_run2.nuc.txt

#NT
UUCCUGUU	chr1:12024200-12024456(+)$1	256	238	246	13.7222
UUGCUGUA	chr16:74526892-74527139(-)$1	247	81	89	12.1481
UUCCUGUC	chr2:128941152-128941417(+)$1	265	45	53	9.9259
UUGCUUUU	chr17:61841430-61841651(-)$1	221	89	97	12.7962
UUGCAGUU	chr9:35067832-35068085(-)$1	253	40	48	12.2407
UUGCUCUU	chr12:65113764-65114055(-)$1	291	55	63	12.4259
CUUCUGUU	chr8:21861321-21861576(+)$1	255	66	74	9.6481
AUGCUGUU	chr1:43829521-43829876(-)$1	355	182	190	12.2407
uugccgcu	chr1:55341514-55341749(-)$1	235	225	233	9.3703
UUCCUGGU	chr11:763646-763870(+)$1	224	71	79	11.5925
UUGCUGGG	chr11:1778479-1778770(-)$1	291	247	255	10.6666
UUCCUGAU	chr11:61068182-61068448(-)$1	266	6	14	11.0370
UGGCUGUU	chr11:62396323-62396543(-)$1	220	181	189	11.5925
GUGCUGUU	chrX:48319015-48319251(-)$1	236	205	213	12.6111
UUCCUUUU	chr6:122774925-122775147(-)$1	222	10	18	10.4814
UUCCUCUU	chr6:53139841-53140114(-)$1	273	45	53	10.1111
UUGCUUUG	chr3:10012216-10012446(-)$1	230	89	97	9.5555
GUGCUGUU	chr11:63520440-63520662(+)$1	222	134	142	12.6111
GUGCUUUU	chr3:195778825-195779061(-)$1	236	136	144	9.3703
UUCCUGCU	chr1:35447581-35447817(-)$1	236	168	176	11.3148
CUGCUGUG	chr16:28993127-28993404(+)$1	277	126	134	9.4629
UUCCUGGU	chr1:207958920-207959128(+)$1	208	26	34	11.5925
UUGCUAUU	chr1:196642887-196643156(+)$1	269	57	65	12.3333
UUCCUGCU	chr11:34112091-34112325(+)$1	234	30	38	11.3148
UUCCUGUU	chr1:116935386-116935613(+)$1	227	19	27	13.7222
CUACUGUU	chr19:14517132-14517398(+)$1	266	48	56	9.3703
UUGCUGGG	chr11:1778453-1778679(-)$1	226	156	164	10.6666
UUGCUGCC	chr20:43139829-43140075(-)$1	246	83	91	9.8333
UUGCUUAU	chr17:57754370-57754621(+)$1	251	138	146	10.1111
UUGCUGAU	chr7:44154793-44155072(-)$1	279	211	219	13.3518
UUGCUAGU	chr1:211748814-211749098(-)$1	284	106	114	10.2037
UUGCUGUU	chr11:62652712-62652925(+)$1	213	6	14	16.0370
UUUCAGUU	chr18:29116182-29116459(+)$1	277	142	150	9.1851
UGGCUGUU	chr11:62396343-62396571(-)$1	228	209	217	11.5925
UUGCUUGU	chr15:83041195-83041466(-)$1	271	227	235	10.6666
UUGCUCCU	chr20:35862390-35862597(+)$1	207	69	77	10.0185
UUUCUGUU	chr3:195785054-195785266(-)$1	212	96	104	12.9814
UUGCAGGU	chr14:101194692-101194895(+)$1	203	98	106	10.1111
UUGCUGCU	chr1:161480542-161480825(+)$1	283	156	164	13.6296
UUCCUGUU	chr10:126830015-126830313(-)$1	298	149	157	13.7222
CUGCUGGU	chr3:33110310-33110550(-)$1	240	188	196	10.5740
UUCCUGUG	chr3:139093234-139093529(-)$1	295	221	229	10.4814
UUGCAGCU	chr20:35864882-35865147(+)$1	265	94	102	9.8333
CUGCUUUU	chr11:62655530-62655766(+)$1	236	65	73	9.4629
UGGCUGUU	chr13:100188761-100189028(+)$1	267	178	186	11.5925
UUGUUGGU	chr1:113464554-113464808(-)$1	254	104	112	9.2777
GUUCUGUU	chr1:201938983-201939267(+)$1	284	43	51	9.5555
UUGCUGGU	chr1:45480950-45481201(+)$1	251	17	25	13.9074
GUGCUGUG	chr12:56119804-56120054(-)$1	250	14	22	9.3703
UUGAUGuu	chr15:78836430-78836710(+)$1	280	221	229	11.4074
UUGCAGAU	chr22:36661236-36661513(+)$1	277	127	135	9.5555
UUGCAGUG	chr2:55201730-55201939(-)$1	209	40	48	8.9999
UUGGUGUU	chr5:131530517-131530746(-)$1	229	150	158	11.4074

#otherMatches

#Struct PSSM
cmmmmccc	chr11:1775139-1775410(-)$1	271	260	268	9.4629
::::::::	chr1:12024200-12024456(+)$1	256	238	246	13.7222
EEEEffff	chr16:74526892-74527139(-)$1	247	81	89	12.1481
rrrrrrra	chr2:128941152-128941417(+)$1	265	45	53	9.9259
::::::::	chr17:61841430-61841651(-)$1	221	89	97	12.7962
::ccc[ad	chr9:35067832-35068085(-)$1	253	40	48	12.2407
qqbb::::	chr12:65113764-65114055(-)$1	291	55	63	12.4259
bb[fffff	chr8:21861321-21861576(+)$1	255	66	74	9.6481
EEEEEEPP	chr1:43829521-43829876(-)$1	355	182	190	12.2407
::::::::	chr1:55341514-55341749(-)$1	235	225	233	9.3703
========	chr11:763646-763870(+)$1	224	71	79	11.5925
DDD}A}FF	chr11:1778479-1778770(-)$1	291	247	255	10.6666
$$$$ccc!	chr11:61068182-61068448(-)$1	266	6	14	11.0370
??FFFFFF	chr11:62396323-62396543(-)$1	220	181	189	11.5925
lldddd66	chrX:48319015-48319251(-)$1	236	205	213	12.6111
hhhhhhhh	chr6:122774925-122775147(-)$1	222	10	18	10.4814
EEEEEDDD	chr6:53139841-53140114(-)$1	273	45	53	10.1111
::::::==	chr3:10012216-10012446(-)$1	230	89	97	9.5555
cc:eeeee	chr11:63520440-63520662(+)$1	222	134	142	12.6111
ggg[cccm	chr3:195778825-195779061(-)$1	236	136	144	9.3703
g]a]dddd	chr1:35447581-35447817(-)$1	236	168	176	11.3148
:::::eee	chr16:28993127-28993404(+)$1	277	126	134	9.4629
qqqqqccc	chr1:207958920-207959128(+)$1	208	26	34	11.5925
DDLLLJJJ	chr1:196642887-196643156(+)$1	269	57	65	12.3333
::::dddd	chr11:34112091-34112325(+)$1	234	30	38	11.3148
!ffffff)	chr1:116935386-116935613(+)$1	227	19	27	13.7222
IIGGGGGG	chr19:14517132-14517398(+)$1	266	48	56	9.3703
eeeeefff	chr11:1778453-1778679(-)$1	226	156	164	10.6666
hhEEEEEC	chr20:43139829-43140075(-)$1	246	83	91	9.8333
ddpppppp	chr17:57754370-57754621(+)$1	251	138	146	10.1111
""bboooo	chr7:44154793-44155072(-)$1	279	211	219	13.3518
cmmmmccc	chr1:211748814-211749098(-)$1	284	106	114	10.2037
:::EEEEE	chr11:62652712-62652925(+)$1	213	6	14	16.0370
]eeeee]e	chr18:29116182-29116459(+)$1	277	142	150	9.1851
mmccc]bb	chr11:62396343-62396571(-)$1	228	209	217	11.5925
##eeeees	chr15:83041195-83041466(-)$1	271	227	235	10.6666
gggg$$$$	chr20:35862390-35862597(+)$1	207	69	77	10.0185
fffff"""	chr3:195785054-195785266(-)$1	212	96	104	12.9814
hhhhhhh:	chr14:101194692-101194895(+)$1	203	98	106	10.1111
hhhhhhh]	chr1:161480542-161480825(+)$1	283	156	164	13.6296
uuuuuuuu	chr10:126830015-126830313(-)$1	298	149	157	13.7222
ddd77777	chr3:33110310-33110550(-)$1	240	188	196	10.5740
::EEEEE}	chr3:139093234-139093529(-)$1	295	221	229	10.4814
bb[ddddl	chr20:35864882-35865147(+)$1	265	94	102	9.8333
HHHHH:::	chr11:62655530-62655766(+)$1	236	65	73	9.4629
iiiiiiii	chr13:100188761-100189028(+)$1	267	178	186	11.5925
ddddeeee	chr1:113464554-113464808(-)$1	254	104	112	9.2777
ddd[bbnn	chr1:201938983-201939267(+)$1	284	43	51	9.5555
:dddd[ah	chr1:45480950-45481201(+)$1	251	17	25	13.9074
oodddd]d	chr12:56119804-56120054(-)$1	250	14	22	9.3703
]bb]eeee	chr15:78836430-78836710(+)$1	280	221	229	11.4074
{CCC{GGG	chr22:36661236-36661513(+)$1	277	127	135	9.5555
::::::::	chr2:55201730-55201939(-)$1	209	40	48	8.9999
ffffff[d	chr5:131530517-131530746(-)$1	229	150	158	11.4074

#DB
(....)))	chr11:1775139-1775410(-)$1	1	260	268	9.4629
........	chr1:12024200-12024456(+)$1	1	238	246	13.7222
((((((((	chr16:74526892-74527139(-)$1	1	81	89	12.1481
.......)	chr2:128941152-128941417(+)$1	1	45	53	9.9259
........	chr17:61841430-61841651(-)$1	1	89	97	12.7962
..(((.((	chr9:35067832-35068085(-)$1	1	40	48	12.2407
..))....	chr12:65113764-65114055(-)$1	1	55	63	12.4259
((.(((((	chr8:21861321-21861576(+)$1	1	66	74	9.6481
((((((..	chr1:43829521-43829876(-)$1	1	182	190	12.2407
........	chr1:55341514-55341749(-)$1	1	225	233	9.3703
))))))))	chr11:763646-763870(+)$1	1	71	79	11.5925
))).).))	chr11:1778479-1778770(-)$1	1	247	255	10.6666
....(((.	chr11:61068182-61068448(-)$1	1	6	14	11.0370
..))))))	chr11:62396323-62396543(-)$1	1	181	189	11.5925
..))))..	chrX:48319015-48319251(-)$1	1	205	213	12.6111
((((((((	chr6:122774925-122775147(-)$1	1	10	18	10.4814
((((((((	chr6:53139841-53140114(-)$1	1	45	53	10.1111
......((	chr3:10012216-10012446(-)$1	1	89	97	9.5555
)).(((((	chr11:63520440-63520662(+)$1	1	134	142	12.6111
(((.(((.	chr3:195778825-195779061(-)$1	1	136	144	9.3703
).).))))	chr1:35447581-35447817(-)$1	1	168	176	11.3148
.....(((	chr16:28993127-28993404(+)$1	1	126	134	9.4629
.....)))	chr1:207958920-207959128(+)$1	1	26	34	11.5925
((...(((	chr1:196642887-196643156(+)$1	1	57	65	12.3333
....((((	chr11:34112091-34112325(+)$1	1	30	38	11.3148
.((((((.	chr1:116935386-116935613(+)$1	1	19	27	13.7222
((((((((	chr19:14517132-14517398(+)$1	1	48	56	9.3703
)))))(((	chr11:1778453-1778679(-)$1	1	156	164	10.6666
))((((((	chr20:43139829-43140075(-)$1	1	83	91	9.8333
((......	chr17:57754370-57754621(+)$1	1	138	146	10.1111
..((....	chr7:44154793-44155072(-)$1	1	211	219	13.3518
(....)))	chr1:211748814-211749098(-)$1	1	106	114	10.2037
...(((((	chr11:62652712-62652925(+)$1	1	6	14	16.0370
.))))).)	chr18:29116182-29116459(+)$1	1	142	150	9.1851
..))).))	chr11:62396343-62396571(-)$1	1	209	217	11.5925
..(((((.	chr15:83041195-83041466(-)$1	1	227	235	10.6666
((((....	chr20:35862390-35862597(+)$1	1	69	77	10.0185
(((((...	chr3:195785054-195785266(-)$1	1	96	104	12.9814
))))))).	chr14:101194692-101194895(+)$1	1	98	106	10.1111
))))))).	chr1:161480542-161480825(+)$1	1	156	164	13.6296
........	chr10:126830015-126830313(-)$1	1	149	157	13.7222
))).....	chr3:33110310-33110550(-)$1	1	188	196	10.5740
..))))).	chr3:139093234-139093529(-)$1	1	221	229	10.4814
((.((((.	chr20:35864882-35865147(+)$1	1	94	102	9.8333
(((((...	chr11:62655530-62655766(+)$1	1	65	73	9.4629
))))))))	chr13:100188761-100189028(+)$1	1	178	186	11.5925
((((((((	chr1:113464554-113464808(-)$1	1	104	112	9.2777
(((.((..	chr1:201938983-201939267(+)$1	1	43	51	9.5555
.((((.((	chr1:45480950-45481201(+)$1	1	17	25	13.9074
..)))).)	chr12:56119804-56120054(-)$1	1	14	22	9.3703
.)).))))	chr15:78836430-78836710(+)$1	1	221	229	11.4074
.(((.(((	chr22:36661236-36661513(+)$1	1	127	135	9.5555
........	chr2:55201730-55201939(-)$1	1	40	48	8.9999
((((((.(	chr5:131530517-131530746(-)$1	1	150	158	11.4074

#PSSM
U : 0.75	C : 0.11	G : 0.09	A : 0.01	u : 0.01	
U : 0.92	G : 0.05	u : 0.01	
G : 0.66	C : 0.22	U : 0.07	g : 0.01	A : 0.01	
C : 0.92	c : 0.01	U : 0.01	A : 0.01	G : 0.01	
U : 0.87	A : 0.11	c : 0.01	
G : 0.75	U : 0.12	C : 0.05	A : 0.03	g : 0.01	
U : 0.59	G : 0.18	C : 0.11	A : 0.07	c : 0.01	u : 0.01	
U : 0.75	G : 0.14	C : 0.03	u : 0.03	A : 0.01	

#score	600.2592592592586
#seq	54
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_UTR_m3_run1.nuc.txt

#NT
GGGAGGUGG	chr16:67977022-67977275(-)$1	253	60	69	19.3076
UGCAGGUGG	chr16:28847426-28847662(+)$1	236	119	128	11.6153
GGGAUCUGG	chr17:40271104-40271356(-)$1	252	210	219	12.6410
gggaggcgg	chr3:15901024-15901321(-)$1	297	241	250	16.6153
GGGAGGGGU	chr17:2593182-2593453(-)$1	271	79	88	12.5128
UGGCGGUGG	chr17:37883379-37883656(+)$1	277	170	179	11.4871
GGGGGGUGG	chr5:52386506-52386748(+)$1	242	89	98	15.2051
GAGAGGUGG	chr17:79211180-79211444(-)$1	264	89	98	14.8205
GGGAAAUGG	chr14:23791212-23791416(+)$1	204	70	79	12.1282
GGGAACUGG	chr17:7481323-7481559(+)$1	236	38	47	12.7692
UGGAGUUGG	chr1:226053589-226053854(-)$1	265	108	117	12.2564
GGGAAGUGC	chr16:4863743-4864002(-)$1	259	205	214	11.4871
GGUAAGUGG	chr6:31638709-31638988(+)$1	279	75	84	12.2564
GGGAGGUUG	chr3:48670988-48671252(-)$1	264	130	139	14.9487
GGGAGGUGA	chr17:7477038-7477283(+)$1	245	147	156	14.9487
GGGAGCUGG	chr17:7477340-7477585(+)$1	245	103	112	16.3589
GGGAGGAGC	chr17:73127285-73127556(-)$1	271	45	54	12.3846
GGUAGGUCG	chr19:5933405-5933653(-)$1	248	228	237	11.4871
GCGAGGAGG	chr14:24911581-24911869(-)$1	288	78	87	12.2564
GGGAGGCGG	chr19:54971742-54971991(+)$1	249	64	73	16.6153
GGGUGGUGG	chr16:2581166-2581421(+)$1	255	96	105	15.0769
GGGAUGGGG	chr11:66394086-66394330(+)$1	244	62	71	13.1538
GGGAGCUGG	chr17:7477430-7477656(+)$1	226	13	22	16.3589
GGGAUCUGG	chr3:184100631-184100872(+)$1	241	102	111	12.6410
GGGAGGGGG	chr20:57467358-57467634(+)$1	276	0	9	16.8717
CGGAGGUGG	chr20:62589038-62589274(-)$1	236	27	36	15.2051
GGGAGUGGG	chr17:80193554-80193808(+)$1	254	103	112	13.5384
GCGCGGUGG	chr19:2228265-2228507(+)$1	242	132	141	10.8461
GGGAGGCAG	chr20:36151576-36151858(-)$1	282	94	103	12.3846
gggaggagg	chr5:172755102-172755394(-)$1	292	99	108	16.6153
GGUAGGUAG	chr17:7123741-7124002(+)$1	261	106	115	11.6153
GGUAGGUGG	chr11:61109873-61110111(+)$1	238	93	102	15.8461
AGUAGGUGG	chr11:62566196-62566452(-)$1	256	93	102	11.7435
GGGAGGGGG	chr11:61634375-61634656(+)$1	281	30	39	16.8717
GGGAGGAGG	chr3:49052722-49052989(+)$1	267	97	106	16.6153
UGGGGGUGG	chr11:72534161-72534420(+)$1	259	88	97	11.4871
GGAAGGGGG	chr14:54421087-54421366(-)$1	279	82	91	12.8974
GGGAGUCGG	chr16:89724493-89724758(+)$1	265	255	264	13.2820

#otherMatches

#Struct PSSM
EEE{DDDD{	chr17:7477394-7477630(+)$1	236	49	58	16.3589
BMMMMDDDD	chr16:67977022-67977275(-)$1	253	60	69	19.3076
b]ccc]ccc	chr16:28847426-28847662(+)$1	236	119	128	11.6153
ffffffeee	chr17:40271104-40271356(-)$1	252	210	219	12.6410
4444a]bb]	chr3:15901024-15901321(-)$1	297	241	250	16.6153
cc:DDDDJJ	chr17:2593182-2593453(-)$1	271	79	88	12.5128
cc[======	chr17:37883379-37883656(+)$1	277	170	179	11.4871
gggg:BBKK	chr5:52386506-52386748(+)$1	242	89	98	15.2051
BB{FFFFFF	chr17:79211180-79211444(-)$1	264	89	98	14.8205
ggg::::dd	chr14:23791212-23791416(+)$1	204	70	79	12.1282
fffff[ddd	chr17:7481323-7481559(+)$1	236	38	47	12.7692
ggg[bba[d	chr1:226053589-226053854(-)$1	265	108	117	12.2564
JJJJJJJJJ	chr16:4863743-4864002(-)$1	259	205	214	11.4871
EEE::BB{C	chr6:31638709-31638988(+)$1	279	75	84	12.2564
ddd[ccc[=	chr3:48670988-48671252(-)$1	264	130	139	14.9487
:dddd[a[c	chr17:7477038-7477283(+)$1	245	147	156	14.9487
ttttccc]a	chr17:7477340-7477585(+)$1	245	103	112	16.3589
GGG:dddd$	chr17:73127285-73127556(-)$1	271	45	54	12.3846
FFFFFFFFF	chr19:5933405-5933653(-)$1	248	228	237	11.4871
bbddddA}F	chr14:24911581-24911869(-)$1	288	78	87	12.2564
gg[bbbbff	chr19:54971742-54971991(+)$1	249	64	73	16.6153
DD}GGGGGG	chr16:2581166-2581421(+)$1	255	96	105	15.0769
ggg!!eeee	chr11:66394086-66394330(+)$1	244	62	71	13.1538
EEE{DDDD{	chr17:7477430-7477656(+)$1	226	13	22	16.3589
d[bbqqqqq	chr3:184100631-184100872(+)$1	241	102	111	12.6410
:::bb[a!!	chr20:57467358-57467634(+)$1	276	0	9	16.8717
cc22ggggg	chr20:62589038-62589274(-)$1	236	27	36	15.2051
eee!!dddd	chr17:80193554-80193808(+)$1	254	103	112	13.5384
F:::::FFF	chr19:2228265-2228507(+)$1	242	132	141	10.8461
eee[ddddb	chr20:36151576-36151858(-)$1	282	94	103	12.3846
CCC{EEEEE	chr5:172755102-172755394(-)$1	292	99	108	16.6153
cccnnnnnc	chr17:7123741-7124002(+)$1	261	106	115	11.6153
MBB{FFFFF	chr11:61109873-61110111(+)$1	238	93	102	15.8461
OOOA{EEEE	chr11:62566196-62566452(-)$1	256	93	102	11.7435
a[ddddnnn	chr11:61634375-61634656(+)$1	281	30	39	16.8717
fffff!!bb	chr3:49052722-49052989(+)$1	267	97	106	16.6153
=========	chr11:72534161-72534420(+)$1	259	88	97	11.4871
e::CCC}CC	chr14:54421087-54421366(-)$1	279	82	91	12.8974
DDEEEEE::	chr16:89724493-89724758(+)$1	265	255	264	13.2820

#DB
(((.((((.	chr17:7477394-7477630(+)$1	1	49	58	16.3589
(....((((	chr16:67977022-67977275(-)$1	1	60	69	19.3076
).))).)))	chr16:28847426-28847662(+)$1	1	119	128	11.6153
))))))(((	chr17:40271104-40271356(-)$1	1	210	219	12.6410
....).)).	chr3:15901024-15901321(-)$1	1	241	250	16.6153
)).((((((	chr17:2593182-2593453(-)$1	1	79	88	12.5128
((.((((((	chr17:37883379-37883656(+)$1	1	170	179	11.4871
)))).((..	chr5:52386506-52386748(+)$1	1	89	98	15.2051
((.((((((	chr17:79211180-79211444(-)$1	1	89	98	14.8205
)))....((	chr14:23791212-23791416(+)$1	1	70	79	12.1282
(((((.(((	chr17:7481323-7481559(+)$1	1	38	47	12.7692
(((.(((.(	chr1:226053589-226053854(-)$1	1	108	117	12.2564
)))))))))	chr16:4863743-4864002(-)$1	1	205	214	11.4871
(((..((.(	chr6:31638709-31638988(+)$1	1	75	84	12.2564
(((.(((.(	chr3:48670988-48671252(-)$1	1	130	139	14.9487
.((((.(.(	chr17:7477038-7477283(+)$1	1	147	156	14.9487
....))).)	chr17:7477340-7477585(+)$1	1	103	112	16.3589
(((.((((.	chr17:73127285-73127556(-)$1	1	45	54	12.3846
)))))))))	chr19:5933405-5933653(-)$1	1	228	237	11.4871
))))))).)	chr14:24911581-24911869(-)$1	1	78	87	12.2564
((.((((((	chr19:54971742-54971991(+)$1	1	64	73	16.6153
)).))))))	chr16:2581166-2581421(+)$1	1	96	105	15.0769
(((..((((	chr11:66394086-66394330(+)$1	1	62	71	13.1538
(((.((((.	chr17:7477430-7477656(+)$1	1	13	22	16.3589
(.((.....	chr3:184100631-184100872(+)$1	1	102	111	12.6410
...((.(..	chr20:57467358-57467634(+)$1	1	0	9	16.8717
))..)))))	chr20:62589038-62589274(-)$1	1	27	36	15.2051
(((..((((	chr17:80193554-80193808(+)$1	1	103	112	13.5384
).....(((	chr19:2228265-2228507(+)$1	1	132	141	10.8461
(((.(((((	chr20:36151576-36151858(-)$1	1	94	103	12.3846
(((.(((((	chr5:172755102-172755394(-)$1	1	99	108	16.6153
(((.....)	chr17:7123741-7124002(+)$1	1	106	115	11.6153
.((.(((((	chr11:61109873-61110111(+)$1	1	93	102	15.8461
...(.((((	chr11:62566196-62566452(-)$1	1	93	102	11.7435
(.((((...	chr11:61634375-61634656(+)$1	1	30	39	16.8717
(((((..((	chr3:49052722-49052989(+)$1	1	97	106	16.6153
)))))))))	chr11:72534161-72534420(+)$1	1	88	97	11.4871
)..))).))	chr14:54421087-54421366(-)$1	1	82	91	12.8974
)))))))..	chr16:89724493-89724758(+)$1	1	255	264	13.2820

#PSSM
G : 0.79	U : 0.10	g : 0.05	C : 0.02	A : 0.02	
G : 0.87	g : 0.05	C : 0.05	A : 0.02	
G : 0.76	U : 0.12	g : 0.05	C : 0.02	A : 0.02	
A : 0.82	a : 0.05	C : 0.05	G : 0.05	U : 0.02	
G : 0.76	A : 0.10	U : 0.07	g : 0.05	
G : 0.69	C : 0.15	U : 0.07	g : 0.05	A : 0.02	
U : 0.64	G : 0.15	A : 0.07	C : 0.07	c : 0.02	a : 0.02	
G : 0.84	g : 0.05	A : 0.05	U : 0.02	C : 0.02	
G : 0.84	g : 0.05	C : 0.05	U : 0.02	A : 0.02	

#score	543.5128205128209
#seq	39
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_UTR_m2_run2.nuc.txt

#NT
GGGGGCGCGGA	chr2:145274901-145275127(-)$1	226	30	41	14.8518
gagggugggga	chr22:50013880-50014186(-)$1	306	101	112	15.5925
AGGUGAGGGGG	chr11:6518953-6519237(+)$1	284	119	130	16.1481
gggggcgggga	chr21:46494365-46494622(+)$1	257	91	102	19.1111
GGGGGUGGGCG	chr16:28875325-28875618(+)$1	293	25	36	16.6111
gggggagcggc	chr1:155947808-155948098(-)$1	290	121	132	17.8148
UGGGGAGGGGG	chr12:132196064-132196380(+)$1	316	86	97	20.2222
UGGGGAGGAGG	chr7:77166712-77166972(+)$1	260	4	15	15.8703
GGGGUAGGGGG	chr12:122238433-122238704(-)$1	271	154	165	19.5740
GGGGGAGGGAG	chr19:1205688-1205966(+)$1	278	80	91	20.0370
GGGGAAGGGGA	chr2:97534068-97534315(-)$1	247	110	121	18.0925
GCGGGAGGAGG	chr7:6522975-6523230(-)$1	255	44	55	15.8703
GGGCGAGGGGC	chr19:18548018-18548292(-)$1	274	7	18	18.1851
GGGCGAGGGGC	chr1:228270379-228270709(+)$1	330	91	102	18.1851
gggggccgggg	chr7:856338-856598(+)$1	260	46	57	16.1481
UGGUGAGGGGG	chr11:65624311-65624578(-)$1	267	13	24	16.5185
GGGGGAAGGGA	chr10:28822885-28823149(+)$1	264	120	131	17.8148
AGGGGAGGGGG	chr17:73775260-73775518(-)$1	258	87	98	19.8518
GGGUGAGGGGA	chr3:47040270-47040595(+)$1	325	129	140	18.6481
GGGGGAGGUGG	chr14:32546357-32546621(+)$1	264	110	121	19.3888
GGGGGAGGGGU	chr7:925015-925275(+)$1	260	170	181	21.7037
GGGGGAUGGGA	chr17:62501973-62502252(-)$1	279	96	107	17.8148
GGGGCAGGGCG	chr4:53279-53548(+)$1	269	116	127	15.7777
uggggcggggg	chr22:42229081-42229399(+)$1	318	2	13	16.9814
GCGGGAGUGGG	chr2:242255601-242255875(+)$1	274	33	44	15.8703
GGGGGUGGGGG	chr19:14628490-14628763(-)$1	273	95	106	20.4074
GGGUGAGGCGG	chr20:3995707-3996010(-)$1	303	94	105	15.7777
GGGGGAGGGAG	chr17:66031918-66032179(+)$1	261	109	120	20.0370
ggAGCAGGGGG	chr15:91446048-91446304(+)$1	256	19	30	15.0370
GGGGUCGGGGG	chr15:89877733-89878054(-)$1	321	107	118	16.3333
GGGGAAGGGGU	chr19:1104349-1104692(+)$1	343	5	16	17.4444
GGGGGAGGGAA	chr1:44431886-44432135(+)$1	249	64	75	18.5555
GGGAGAGGGGA	chr17:73823576-73823859(-)$1	283	242	253	18.2777
ggggguggggu	chr14:23791035-23791280(+)$1	245	81	92	18.2777
GCGGGAGCGGG	chr5:176981011-176981292(-)$1	281	95	106	15.9629
CGGGGAGGGGG	chr6:34857033-34857319(+)$1	286	112	123	19.7592
GGGGGAGGGCU	chr16:4660786-4661039(-)$1	253	202	213	17.9074
GGGCGAGGGGG	chr2:85766871-85767152(+)$1	281	84	95	19.9444
UCGGGAGGGGC	chr12:31477256-31477500(-)$1	244	8	19	14.8518
Gagggagggga	chr6:86352566-86352828(-)$1	262	78	89	19.0185
GGGGGAGGGAC	chr17:7476449-7476681(+)$1	232	109	120	18.2777
GAGGGAGUGGC	chr11:65633288-65633550(+)$1	262	100	111	14.3888
GGGGGAGGGUG	chr22:22275659-22275927(-)$1	268	76	87	19.7592
gagggagggga	chr19:39833113-39833384(+)$1	271	8	19	19.0185
GGGUGCGGGGG	chr5:179248455-179248810(+)$1	355	175	186	16.8888
GGAGGAGGCGG	chr4:174255125-174255443(-)$1	318	186	197	14.9444
Gggggcggggc	chr9:139560088-139560350(+)$1	262	59	70	18.8333
gggggacggga	chr4:2936009-2936277(-)$1	268	23	34	17.9074
GAGGGAGGGGG	chr1:155658345-155658603(-)$1	258	97	108	20.4999
GAGGGAGGGGC	chr12:76477637-76477890(-)$1	253	40	51	18.7407
UGUGGAGGGGG	chr21:46685899-46686147(-)$1	248	131	142	15.5925
GGGGGUGGGGC	chr3:197024774-197025040(-)$1	266	107	118	18.6481
GGGGGAGGGCU	chr11:64545093-64545355(-)$1	262	85	96	17.9074

#otherMatches

#Struct PSSM
:::::::::::	chr1:155658258-155658522(-)$1	264	16	27	20.4999
gggggg[ccc[	chr2:145274901-145275127(-)$1	226	30	41	14.8518
ddd]dddd:::	chr22:50013880-50014186(-)$1	306	101	112	15.5925
3ccc]ffffff	chr11:6518953-6519237(+)$1	284	119	130	16.1481
iiiiiiiii22	chr21:46494365-46494622(+)$1	257	91	102	19.1111
ffffff333a]	chr16:28875325-28875618(+)$1	293	25	36	16.6111
JJJJJJ::::c	chr1:155947808-155948098(-)$1	290	121	132	17.8148
]ffffffffff	chr12:132196064-132196380(+)$1	316	86	97	20.2222
exxxxxxxxxx	chr7:77166712-77166972(+)$1	260	4	15	15.8703
b[ccc!!eeee	chr12:122238433-122238704(-)$1	271	154	165	19.5740
HHHHHHHH:::	chr19:1205688-1205966(+)$1	278	80	91	20.0370
EEEE{CCCBB:	chr2:97534068-97534315(-)$1	247	110	121	18.0925
eeeee::iiii	chr7:6522975-6523230(-)$1	255	44	55	15.8703
====$$$$$cc	chr19:18548018-18548292(-)$1	274	7	18	18.1851
ccbbnnnnnbb	chr1:228270379-228270709(+)$1	330	91	102	18.1851
c!!dddd[eee	chr7:856338-856598(+)$1	260	46	57	16.1481
:bb[ggggggg	chr11:65624311-65624578(-)$1	267	13	24	16.5185
LLLDDDDKKEE	chr10:28822885-28823149(+)$1	264	120	131	17.8148
eee55555a]f	chr17:73775260-73775518(-)$1	258	87	98	19.8518
LDDDD:eeeee	chr3:47040270-47040595(+)$1	325	129	140	18.6481
qqqqqqqqbb]	chr14:32546357-32546621(+)$1	264	110	121	19.3888
===========	chr7:925015-925275(+)$1	260	170	181	21.7037
bbdddd[ffff	chr17:62501973-62502252(-)$1	279	96	107	17.8148
eee333dddd4	chr4:53279-53548(+)$1	269	116	127	15.7777
:iiiiiiiiiq	chr22:42229081-42229399(+)$1	318	2	13	16.9814
mdddd:::iii	chr2:242255601-242255875(+)$1	274	33	44	15.8703
eeee]bb]ddd	chr19:14628490-14628763(-)$1	273	95	106	20.4074
EE{AKKDDDDC	chr20:3995707-3996010(-)$1	303	94	105	15.7777
qqqffffff:D	chr17:66031918-66032179(+)$1	261	109	120	20.0370
dd[eeeee[bb	chr15:91446048-91446304(+)$1	256	19	30	15.0370
{Adddd[aqqq	chr15:89877733-89878054(-)$1	321	107	118	16.3333
"addddppppp	chr19:1104349-1104692(+)$1	343	5	16	17.4444
eeeee[dddd!	chr1:44431886-44432135(+)$1	249	64	75	18.5555
FFFFFYYDDDD	chr17:73823576-73823859(-)$1	283	242	253	18.2777
33dddd55555	chr14:23791035-23791280(+)$1	245	81	92	18.2777
ggBBKKIIIII	chr5:176981011-176981292(-)$1	281	95	106	15.9629
ee$$$$$dddd	chr6:34857033-34857319(+)$1	286	112	123	19.7592
==========:	chr16:4660786-4661039(-)$1	253	202	213	17.9074
EEEEE::ffff	chr2:85766871-85767152(+)$1	281	84	95	19.9444
::::ggggggg	chr12:31477256-31477500(-)$1	244	8	19	14.8518
:::::::::::	chr6:86352566-86352828(-)$1	262	78	89	19.0185
grrrrrrrrrg	chr17:7476449-7476681(+)$1	232	109	120	18.2777
[ffffff[eee	chr11:65633288-65633550(+)$1	262	100	111	14.3888
[a[ccc[ccc[	chr22:22275659-22275927(-)$1	268	76	87	19.7592
::::=======	chr19:39833113-39833384(+)$1	271	8	19	19.0185
mmdddd22a22	chr5:179248455-179248810(+)$1	355	175	186	16.8888
ee::::eeeee	chr4:174255125-174255443(-)$1	318	186	197	14.9444
a]hhhhhhhh]	chr9:139560088-139560350(+)$1	262	59	70	18.8333
++++++ccc!!	chr4:2936009-2936277(-)$1	268	23	34	17.9074
:::::::::::	chr1:155658345-155658603(-)$1	258	97	108	20.4999
ddd333a]ccc	chr12:76477637-76477890(-)$1	253	40	51	18.7407
ffccc]fffff	chr21:46685899-46686147(-)$1	248	131	142	15.5925
fmmmmffffff	chr3:197024774-197025040(-)$1	266	107	118	18.6481
eeeBB{JJJJJ	chr11:64545093-64545355(-)$1	262	85	96	17.9074

#DB
...........	chr1:155658258-155658522(-)$1	1	16	27	20.4999
((((((.(((.	chr2:145274901-145275127(-)$1	1	30	41	14.8518
))).))))...	chr22:50013880-50014186(-)$1	1	101	112	15.5925
.))).))))))	chr11:6518953-6519237(+)$1	1	119	130	16.1481
)))))))))..	chr21:46494365-46494622(+)$1	1	91	102	19.1111
))))))...).	chr16:28875325-28875618(+)$1	1	25	36	16.6111
))))))....(	chr1:155947808-155948098(-)$1	1	121	132	17.8148
.))))))))))	chr12:132196064-132196380(+)$1	1	86	97	20.2222
(..........	chr7:77166712-77166972(+)$1	1	4	15	15.8703
(.(((..((((	chr12:122238433-122238704(-)$1	1	154	165	19.5740
((((((((...	chr19:1205688-1205966(+)$1	1	80	91	20.0370
((((.(((((.	chr2:97534068-97534315(-)$1	1	110	121	18.0925
)))))..((((	chr7:6522975-6523230(-)$1	1	44	55	15.8703
((((.....((	chr19:18548018-18548292(-)$1	1	7	18	18.1851
))((.....))	chr1:228270379-228270709(+)$1	1	91	102	18.1851
(..((((.(((	chr7:856338-856598(+)$1	1	46	57	16.1481
.((.(((((((	chr11:65624311-65624578(-)$1	1	13	24	16.5185
...((((..((	chr10:28822885-28823149(+)$1	1	120	131	17.8148
))).....).)	chr17:73775260-73775518(-)$1	1	87	98	19.8518
.((((.(((((	chr3:47040270-47040595(+)$1	1	129	140	18.6481
........)).	chr14:32546357-32546621(+)$1	1	110	121	19.3888
)))))))))))	chr7:925015-925275(+)$1	1	170	181	21.7037
))((((.((((	chr17:62501973-62502252(-)$1	1	96	107	17.8148
)))...)))).	chr4:53279-53548(+)$1	1	116	127	15.7777
.(((((((((.	chr22:42229081-42229399(+)$1	1	2	13	16.9814
.))))...(((	chr2:242255601-242255875(+)$1	1	33	44	15.8703
)))).)).)))	chr19:14628490-14628763(-)$1	1	95	106	20.4074
((.(..(((((	chr20:3995707-3996010(-)$1	1	94	105	15.7777
...)))))).)	chr17:66031918-66032179(+)$1	1	109	120	20.0370
((.(((((.((	chr15:91446048-91446304(+)$1	1	19	30	15.0370
.(((((.(...	chr15:89877733-89878054(-)$1	1	107	118	16.3333
.(((((.....	chr19:1104349-1104692(+)$1	1	5	16	17.4444
(((((.((((.	chr1:44431886-44432135(+)$1	1	64	75	18.5555
)))))..))))	chr17:73823576-73823859(-)$1	1	242	253	18.2777
..)))).....	chr14:23791035-23791280(+)$1	1	81	92	18.2777
))((..(((((	chr5:176981011-176981292(-)$1	1	95	106	15.9629
((.....((((	chr6:34857033-34857319(+)$1	1	112	123	19.7592
)))))))))).	chr16:4660786-4661039(-)$1	1	202	213	17.9074
)))))..((((	chr2:85766871-85767152(+)$1	1	84	95	19.9444
....(((((((	chr12:31477256-31477500(-)$1	1	8	19	14.8518
...........	chr6:86352566-86352828(-)$1	1	78	89	19.0185
(.........)	chr17:7476449-7476681(+)$1	1	109	120	18.2777
.((((((.(((	chr11:65633288-65633550(+)$1	1	100	111	14.3888
.(.(((.(((.	chr22:22275659-22275927(-)$1	1	76	87	19.7592
....(((((((	chr19:39833113-39833384(+)$1	1	8	19	19.0185
..))))..)..	chr5:179248455-179248810(+)$1	1	175	186	16.8888
))....(((((	chr4:174255125-174255443(-)$1	1	186	197	14.9444
).)))))))).	chr9:139560088-139560350(+)$1	1	59	70	18.8333
......(((..	chr4:2936009-2936277(-)$1	1	23	34	17.9074
...........	chr1:155658345-155658603(-)$1	1	97	108	20.4999
)))...).)))	chr12:76477637-76477890(-)$1	1	40	51	18.7407
))))).)))))	chr21:46685899-46686147(-)$1	1	131	142	15.5925
(....))))))	chr3:197024774-197025040(-)$1	1	107	118	18.6481
)))((.(((((	chr11:64545093-64545355(-)$1	1	85	96	17.9074

#PSSM
G : 0.68	g : 0.14	U : 0.09	A : 0.03	u : 0.01	C : 0.01	
G : 0.64	g : 0.14	A : 0.07	C : 0.07	a : 0.05	
G : 0.75	g : 0.18	A : 0.03	U : 0.01	
G : 0.64	g : 0.18	U : 0.09	C : 0.05	A : 0.01	
G : 0.70	g : 0.18	U : 0.03	A : 0.03	C : 0.03	
A : 0.70	c : 0.07	a : 0.07	C : 0.05	U : 0.05	u : 0.03	
G : 0.77	g : 0.14	c : 0.03	A : 0.01	U : 0.01	
G : 0.74	g : 0.16	C : 0.03	U : 0.03	c : 0.01	
G : 0.72	g : 0.18	A : 0.03	C : 0.03	U : 0.01	
G : 0.64	g : 0.18	C : 0.07	A : 0.07	U : 0.01	
G : 0.48	A : 0.12	C : 0.12	a : 0.09	U : 0.07	c : 0.03	g : 0.03	u : 0.01	

#score	962.1851851851845
#seq	54
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_CDS_m3_run1.nuc.txt

#NT
CCAGGCC	chr7:75931979-75932258(+)$1	279	139	146	19.3333
CCAGGCC	chr5:70883202-70883406(+)$1	204	8	15	19.3333
CCAGGCC	chr16:88870214-88870492(+)$1	278	122	129	19.3333
CCUGGCC	chr7:6523601-6523898(-)$1	297	32	39	16.8333
CCAGGCC	chr5:70883206-70883427(+)$1	221	4	11	19.3333
CCCGGCC	chr2:55276819-55277078(-)$1	259	63	70	16.8333
CCAGGCC	chr22:23523266-23523573(+)$1	307	257	264	19.3333
CCUGGCC	chr19:50354486-50354835(+)$1	349	205	212	16.8333
ccaggcc	chr6:34212609-34212864(+)$1	255	142	149	19.3333
CCUGGCC	chr11:5289614-5289894(-)$1	280	174	181	16.8333
CCAGGCC	chr16:30080829-30081092(+)$1	263	71	78	19.3333
CCAGGCC	chr1:8925282-8925572(-)$1	290	27	34	19.3333
ccaggcc	chr16:29818320-29818640(+)$1	320	4	11	19.3333
CCAGGCC	chr1:35658087-35658361(-)$1	274	149	156	19.3333
ccaggcc	chr6:34212678-34212944(+)$1	266	73	80	19.3333
CCAGGCC	chr1:35657975-35658214(-)$1	239	2	9	19.3333
CCCGGCC	chr2:55276878-55277193(-)$1	315	178	185	16.8333
CCAGGCC	chr16:88870315-88870551(+)$1	236	21	28	19.3333
CCAGgcc	chr19:1241671-1242017(+)$1	346	109	116	19.3333
CCCGGCC	chr2:55276993-55277273(-)$1	280	258	265	16.8333
CCUGGCC	chr7:5568726-5568985(-)$1	259	236	243	16.8333
ccaggcc	chr16:29818267-29818520(+)$1	253	57	64	19.3333
CCAGGCC	chr16:88870116-88870414(+)$1	298	220	227	19.3333
cccggcc	chr1:156721115-156721397(-)$1	282	136	143	16.8333
CCAGGCC	chr7:75932086-75932314(+)$1	228	32	39	19.3333
CCAGGCC	chr2:97543590-97543873(-)$1	283	159	166	19.3333
CCAGGCC	chr16:30081371-30081599(+)$1	228	193	200	19.3333
CCCGGCC	chr11:61734777-61735183(-)$1	406	156	163	16.8333
CCAGGCC	chr1:35658199-35658561(-)$1	362	349	356	19.3333

#otherMatches

#Struct PSSM
cc[ccc[	chr16:204265-204551(+)$1	286	31	38	16.8333
fff!!gg	chr7:75931979-75932258(+)$1	279	139	146	19.3333
:GGGGGG	chr5:70883202-70883406(+)$1	204	8	15	19.3333
b!!ccc!	chr16:88870214-88870492(+)$1	278	122	129	19.3333
=lll===	chr7:6523601-6523898(-)$1	297	32	39	16.8333
HHHHHHH	chr5:70883206-70883427(+)$1	221	4	11	19.3333
d::dddd	chr2:55276819-55277078(-)$1	259	63	70	16.8333
c!!a[ff	chr22:23523266-23523573(+)$1	307	257	264	19.3333
]a]bb::	chr19:50354486-50354835(+)$1	349	205	212	16.8333
BB:::EE	chr6:34212609-34212864(+)$1	255	142	149	19.3333
oodddd:	chr11:5289614-5289894(-)$1	280	174	181	16.8333
ooogggg	chr16:30080829-30081092(+)$1	263	71	78	19.3333
=======	chr1:8925282-8925572(-)$1	290	27	34	19.3333
BKKDDDD	chr16:29818320-29818640(+)$1	320	4	11	19.3333
dlllddd	chr1:35658087-35658361(-)$1	274	149	156	19.3333
EEEEE::	chr6:34212678-34212944(+)$1	266	73	80	19.3333
::GGGGG	chr1:35657975-35658214(-)$1	239	2	9	19.3333
EE:dddd	chr2:55276878-55277193(-)$1	315	178	185	16.8333
NNNNNEE	chr16:88870315-88870551(+)$1	236	21	28	19.3333
nnnccc5	chr19:1241671-1242017(+)$1	346	109	116	19.3333
EYYBBYY	chr2:55276993-55277273(-)$1	280	258	265	16.8333
::::EEE	chr7:5568726-5568985(-)$1	259	236	243	16.8333
lllccc:	chr16:29818267-29818520(+)$1	253	57	64	19.3333
]ffffff	chr16:88870116-88870414(+)$1	298	220	227	19.3333
YGGGGGG	chr1:156721115-156721397(-)$1	282	136	143	16.8333
fff!!gg	chr7:75932086-75932314(+)$1	228	32	39	19.3333
ZGGGGGG	chr2:97543590-97543873(-)$1	283	159	166	19.3333
@@@@GGG	chr16:30081371-30081599(+)$1	228	193	200	19.3333
:::ccc[	chr11:61734777-61735183(-)$1	406	156	163	16.8333
JJJJJCC	chr1:35658199-35658561(-)$1	362	349	356	19.3333

#DB
((.(((.	chr16:204265-204551(+)$1	1	31	38	16.8333
(((..((	chr7:75931979-75932258(+)$1	1	139	146	19.3333
.((((((	chr5:70883202-70883406(+)$1	1	8	15	19.3333
(..(((.	chr16:88870214-88870492(+)$1	1	122	129	19.3333
(...)))	chr7:6523601-6523898(-)$1	1	32	39	16.8333
(((((((	chr5:70883206-70883427(+)$1	1	4	11	19.3333
)..((((	chr2:55276819-55277078(-)$1	1	63	70	16.8333
(..(.((	chr22:23523266-23523573(+)$1	1	257	264	19.3333
.).))..	chr19:50354486-50354835(+)$1	1	205	212	16.8333
))...((	chr6:34212609-34212864(+)$1	1	142	149	19.3333
..)))).	chr11:5289614-5289894(-)$1	1	174	181	16.8333
...))))	chr16:30080829-30081092(+)$1	1	71	78	19.3333
(((((((	chr1:8925282-8925572(-)$1	1	27	34	19.3333
(..((((	chr16:29818320-29818640(+)$1	1	4	11	19.3333
(...)))	chr1:35658087-35658361(-)$1	1	149	156	19.3333
(((((..	chr6:34212678-34212944(+)$1	1	73	80	19.3333
..(((((	chr1:35657975-35658214(-)$1	1	2	9	19.3333
)).((((	chr2:55276878-55277193(-)$1	1	178	185	16.8333
.....((	chr16:88870315-88870551(+)$1	1	21	28	19.3333
...))).	chr19:1241671-1242017(+)$1	1	109	116	19.3333
)..))..	chr2:55276993-55277273(-)$1	1	258	265	16.8333
....)))	chr7:5568726-5568985(-)$1	1	236	243	16.8333
...))).	chr16:29818267-29818520(+)$1	1	57	64	19.3333
.))))))	chr16:88870116-88870414(+)$1	1	220	227	19.3333
.))))))	chr1:156721115-156721397(-)$1	1	136	143	16.8333
(((..((	chr7:75932086-75932314(+)$1	1	32	39	19.3333
.))))))	chr2:97543590-97543873(-)$1	1	159	166	19.3333
....)))	chr16:30081371-30081599(+)$1	1	193	200	19.3333
...(((.	chr11:61734777-61735183(-)$1	1	156	163	16.8333
)))))))	chr1:35658199-35658561(-)$1	1	349	356	19.3333

#PSSM
C : 0.83	c : 0.16	
C : 0.83	c : 0.16	
A : 0.53	U : 0.16	C : 0.13	a : 0.13	c : 0.03	
G : 0.83	g : 0.16	
G : 0.79	g : 0.19	
C : 0.79	c : 0.19	
C : 0.79	c : 0.19	

#score	554.9999999999999
#seq	30
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_CDS_m1_run1.nuc.txt

#NT
AGAAGUGG	chr6:30884785-30885041(+)$1	256	57	65	16.0270
AGAAGAGG	chr9:710782-711044(+)$1	262	174	182	19.8108
AGGAGAGG	chrM:14225-14432(-)$1	207	141	149	18.0540
GGAAGAGG	chrY:2713651-2713874(+)$1	223	120	128	15.7567
AGAAGAGG	chr6:7581204-7581444(+)$1	240	95	103	19.8108
AGGAGAGG	chrM:14184-14391(-)$1	207	100	108	18.0540
AGGAGAGG	chr11:62297544-62297769(-)$1	225	68	76	18.0540
AGAAGAGG	chr4:83348506-83348757(-)$1	251	82	90	19.8108
AGAGGAGG	chr3:58080555-58080781(+)$1	226	119	127	15.3513
AGAAGCGG	chr12:76443430-76443654(-)$1	224	106	114	15.6216
AGAGGAGG	chr1:35653472-35653719(-)$1	247	31	39	15.3513
AGAAGUGG	chr1:171511202-171511462(+)$1	260	131	139	16.0270
AGGAGAGG	chrM:14254-14466(-)$1	212	175	183	18.0540
AGAAGAAG	chr2:62974470-62974688(+)$1	218	90	98	15.6216
AGGAGAGG	chr11:62297586-62297905(-)$1	319	204	212	18.0540
UGAAGAGG	chr9:111658675-111658918(-)$1	243	28	36	15.8918
AAAAGAGG	chr6:144803336-144803553(+)$1	217	13	21	15.0810
AGGAGAGG	chrY:21897184-21897458(-)$1	274	35	43	18.0540
AGGAGAGG	chrM:14251-14454(-)$1	203	163	171	18.0540
AGGAGAGG	chrM:14266-14472(-)$1	206	181	189	18.0540
agaagaag	chr12:104332102-104332321(+)$1	219	44	52	15.6216
UGGAGAGG	chr13:113764817-113765117(+)$1	300	273	281	14.1351
AGAAAAGG	chr2:63086281-63086524(+)$1	243	56	64	15.3513
agaacagg	chr14:39649931-39650202(+)$1	271	34	42	15.4864
AGAAGUGG	chr1:19490648-19490869(-)$1	221	167	175	16.0270
AGAACAGG	chrX:53585611-53585837(-)$1	226	199	207	15.4864
AGAAGAAG	chr2:11348372-11348633(-)$1	261	66	74	15.6216
GGAAGAGG	chr16:89351016-89351325(-)$1	309	153	161	15.7567
AGGAGAGG	chrM:14232-14435(-)$1	203	144	152	18.0540
AGAAGAGG	chr6:33179568-33179819(+)$1	251	235	243	19.8108
agaagagg	chr1:160209636-160209976(-)$1	340	84	92	19.8108
AGGAGAGG	chr11:62297246-62297511(-)$1	265	194	202	18.0540
AGAAGAGG	chr6:7581126-7581364(+)$1	238	173	181	19.8108
AGGAGAGG	chrM:14272-14484(-)$1	212	193	201	18.0540
AGAAGAGG	chr2:54856148-54856378(+)$1	230	66	74	19.8108
UGAAGAGG	chr1:19474961-19475191(-)$1	230	169	177	15.8918

#otherMatches

#Struct PSSM
eee####b	chr10:93695355-93695582(+)$1	227	133	141	16.0270
"""iiiii	chr6:30884785-30885041(+)$1	256	57	65	16.0270
cc::::cc	chr9:710782-711044(+)$1	262	174	182	19.8108
ddd77777	chrM:14225-14432(-)$1	207	141	149	18.0540
eeee"""f	chrY:2713651-2713874(+)$1	223	120	128	15.7567
ooooobb]	chr6:7581204-7581444(+)$1	240	95	103	19.8108
gg$$$$$a	chrM:14184-14391(-)$1	207	100	108	18.0540
ldddd]dd	chr11:62297544-62297769(-)$1	225	68	76	18.0540
wwwwwwww	chr4:83348506-83348757(-)$1	251	82	90	19.8108
$dddd[ee	chr3:58080555-58080781(+)$1	226	119	127	15.3513
dd]dddd2	chr12:76443430-76443654(-)$1	224	106	114	15.6216
EEMMMMCC	chr1:35653472-35653719(-)$1	247	31	39	15.3513
gggggg::	chr1:171511202-171511462(+)$1	260	131	139	16.0270
ddd4444b	chrM:14254-14466(-)$1	212	175	183	18.0540
ffffff""	chr2:62974470-62974688(+)$1	218	90	98	15.6216
ldddd]dd	chr11:62297586-62297905(-)$1	319	204	212	18.0540
{FFFFFFU	chr9:111658675-111658918(-)$1	243	28	36	15.8918
DNNNNNDD	chr6:144803336-144803553(+)$1	217	13	21	15.0810
FFF:::cc	chrY:21897184-21897458(-)$1	274	35	43	18.0540
ddd4444b	chrM:14251-14454(-)$1	203	163	171	18.0540
ee:::::f	chrM:14266-14472(-)$1	206	181	189	18.0540
CCC::::e	chr12:104332102-104332321(+)$1	219	44	52	15.6216
gmmmmggg	chr13:113764817-113765117(+)$1	300	273	281	14.1351
ggggg!!f	chr2:63086281-63086524(+)$1	243	56	64	15.3513
zffffff2	chr14:39649931-39650202(+)$1	271	34	42	15.4864
BB}EEEEE	chr1:19490648-19490869(-)$1	221	167	175	16.0270
EEYYEEEE	chrX:53585611-53585837(-)$1	226	199	207	15.4864
=:::dddd	chr2:11348372-11348633(-)$1	261	66	74	15.6216
eee:eeee	chr16:89351016-89351325(-)$1	309	153	161	15.7567
ddd::::f	chrM:14232-14435(-)$1	203	144	152	18.0540
eee333bb	chr6:33179568-33179819(+)$1	251	235	243	19.8108
::::DDDD	chr1:160209636-160209976(-)$1	340	84	92	19.8108
00000ccc	chr11:62297246-62297511(-)$1	265	194	202	18.0540
ooooobb]	chr6:7581126-7581364(+)$1	238	173	181	19.8108
ddd4444b	chrM:14272-14484(-)$1	212	193	201	18.0540
ggggggbb	chr2:54856148-54856378(+)$1	230	66	74	19.8108
hhoooooo	chr1:19474961-19475191(-)$1	230	169	177	15.8918

#DB
(((....(	chr10:93695355-93695582(+)$1	1	133	141	16.0270
...(((((	chr6:30884785-30885041(+)$1	1	57	65	16.0270
))....((	chr9:710782-711044(+)$1	1	174	182	19.8108
))).....	chrM:14225-14432(-)$1	1	141	149	18.0540
((((...(	chrY:2713651-2713874(+)$1	1	120	128	15.7567
.....)).	chr6:7581204-7581444(+)$1	1	95	103	19.8108
((.....(	chrM:14184-14391(-)$1	1	100	108	18.0540
.)))).))	chr11:62297544-62297769(-)$1	1	68	76	18.0540
........	chr4:83348506-83348757(-)$1	1	82	90	19.8108
.((((.((	chr3:58080555-58080781(+)$1	1	119	127	15.3513
)).)))).	chr12:76443430-76443654(-)$1	1	106	114	15.6216
((....((	chr1:35653472-35653719(-)$1	1	31	39	15.3513
))))))..	chr1:171511202-171511462(+)$1	1	131	139	16.0270
)))....)	chrM:14254-14466(-)$1	1	175	183	18.0540
((((((..	chr2:62974470-62974688(+)$1	1	90	98	15.6216
.)))).))	chr11:62297586-62297905(-)$1	1	204	212	18.0540
.((((((.	chr9:111658675-111658918(-)$1	1	28	36	15.8918
(.....((	chr6:144803336-144803553(+)$1	1	13	21	15.0810
(((...((	chrY:21897184-21897458(-)$1	1	35	43	18.0540
)))....)	chrM:14251-14454(-)$1	1	163	171	18.0540
)).....(	chrM:14266-14472(-)$1	1	181	189	18.0540
(((....(	chr12:104332102-104332321(+)$1	1	44	52	15.6216
(....)))	chr13:113764817-113765117(+)$1	1	273	281	14.1351
(((((..(	chr2:63086281-63086524(+)$1	1	56	64	15.3513
.)))))).	chr14:39649931-39650202(+)$1	1	34	42	15.4864
)).)))))	chr1:19490648-19490869(-)$1	1	167	175	16.0270
))..))))	chrX:53585611-53585837(-)$1	1	199	207	15.4864
)...((((	chr2:11348372-11348633(-)$1	1	66	74	15.6216
))).((((	chr16:89351016-89351325(-)$1	1	153	161	15.7567
)))....(	chrM:14232-14435(-)$1	1	144	152	18.0540
)))...))	chr6:33179568-33179819(+)$1	1	235	243	19.8108
....((((	chr1:160209636-160209976(-)$1	1	84	92	19.8108
.....)))	chr11:62297246-62297511(-)$1	1	194	202	18.0540
.....)).	chr6:7581126-7581364(+)$1	1	173	181	19.8108
)))....)	chrM:14272-14484(-)$1	1	193	201	18.0540
))))))))	chr2:54856148-54856378(+)$1	1	66	74	19.8108
((......	chr1:19474961-19475191(-)$1	1	169	177	15.8918

#PSSM
A : 0.78	U : 0.08	a : 0.08	G : 0.05	
G : 0.89	g : 0.08	A : 0.02	
A : 0.59	G : 0.32	a : 0.08	
A : 0.86	a : 0.08	G : 0.05	
G : 0.86	g : 0.05	A : 0.02	c : 0.02	C : 0.02	
A : 0.78	U : 0.10	a : 0.08	C : 0.02	
G : 0.86	A : 0.05	g : 0.05	a : 0.02	
G : 0.91	g : 0.08	

#score	633.4054054054051
#seq	37
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_UTR_m3_run2.nuc.txt

#NT
gggcUGUAGG	chr8:145691411-145691674(+)$1	263	15	25	15.3448
GGGCUGAGGG	chr11:64949285-64949565(+)$1	280	251	261	19.9999
GGGCUGCCGG	chr8:87354964-87355252(+)$1	288	44	54	16.9827
GGGCUCUGGG	chr21:46954410-46954718(-)$1	308	131	141	16.0344
GGGCUCUGGG	chr6:43028063-43028334(+)$1	271	111	121	16.0344
GGGGUGGGGG	chr11:554413-554711(+)$1	298	138	148	17.5862
GGACUGGGGG	chr6:86352836-86353095(-)$1	259	89	99	16.1206
GGGCUUCGGG	chr1:245026188-245026439(-)$1	251	145	155	17.3275
cggcggcggg	chr22:38713201-38713506(-)$1	305	82	92	14.6551
gggcugcggg	chr17:37824299-37824598(+)$1	299	171	181	21.4655
GGGCUGCGGG	chr19:6740920-6741218(+)$1	298	275	285	21.4655
gggccggggg	chr3:128211578-128211878(+)$1	300	108	118	17.7586
GGGCAGGGGG	chr21:46644486-46644764(+)$1	278	5	15	17.3275
gggaggcggg	chr7:128864763-128865080(+)$1	317	90	100	15.7758
gggcggcggg	chr7:77166641-77166910(+)$1	269	177	187	19.3103
GGGCUGAGAG	chr16:23690919-23691247(+)$1	328	207	217	15.6034
gagcggcggg	chr18:55711508-55711801(+)$1	293	33	43	14.6551
GGGCUUGGGG	chr1:150547232-150547486(-)$1	254	36	46	16.3793
GGCCUGAGGG	chr1:155532302-155532602(-)$1	300	70	80	15.6034
GGACUGGGGG	chr16:69419254-69419551(-)$1	297	122	132	16.1206
GGGUGGCGGG	chr19:41770836-41771100(+)$1	264	107	117	15.9482
GGGGGGUGGG	chr1:205719012-205719256(-)$1	244	74	84	14.8275
GGGCUGGGUG	chr22:20862367-20862698(+)$1	331	21	31	15.9482
gGGGUGUGGG	chr11:126146196-126146460(+)$1	264	13	23	16.9827
AGGCUGCGGG	chr1:1822219-1822551(-)$1	332	14	24	16.8965
gggcggaggg	chr7:151216135-151216400(-)$1	265	94	104	17.8448
GGGCUGCGGA	chr2:48010574-48010873(+)$1	299	20	30	17.3275
GGGGUGCGGG	chr5:179248515-179248778(+)$1	263	114	124	18.5344
GGGCCGCCGG	chr16:88922543-88922825(-)$1	282	135	145	14.2241
GGGCUGUGGG	chr4:39784125-39784426(+)$1	301	118	128	19.9137
gagcggcggg	chr1:155947795-155948092(-)$1	297	66	76	14.6551
GGGGUGGGGG	chr17:46653865-46654127(-)$1	262	73	83	17.5862
GGGCGGCGGG	chr4:83931803-83932095(-)$1	292	33	43	19.3103
GGGCUCCGGG	chr6:149639340-149639582(+)$1	242	49	59	17.5862
GGGAUGAGGG	chr9:34634940-34635193(-)$1	253	1	11	16.4655
gGGGUGUGGG	chr11:126146105-126146396(+)$1	291	104	114	16.9827
GGGCUAGGGG	chr19:42752193-42752463(-)$1	270	35	45	16.2931
GGCCUGGGGG	chr3:184080487-184080763(+)$1	276	90	100	16.1206
GGGCUGCUGG	chr6:16129270-16129498(+)$1	228	50	60	16.8965
gggcugggag	chr16:848351-848635(+)$1	284	40	50	16.1206
ggggugcggg	chr17:38278460-38278715(+)$1	255	35	45	18.5344
gggcugggag	chr19:55595092-55595424(+)$1	332	70	80	16.1206
GGGCGGCGGA	chr5:138629685-138630019(+)$1	334	21	31	15.1724
GGGCCCCGGG	chr16:30535266-30535549(-)$1	283	116	126	14.8275
GGGCGGAGGG	chr7:158459783-158460146(-)$1	363	20	30	17.8448
GGGUCGCGGG	chr5:43121631-43121915(+)$1	284	113	123	15.3448
GGGCUGAGGA	chrX:133930864-133931140(-)$1	276	143	153	15.8620
gggccggggg	chr10:103454574-103454857(-)$1	283	202	212	17.7586
gggcggcggc	chr19:39833019-39833296(+)$1	277	222	232	14.9999
GGGCUGAGGA	chrX:133930940-133931172(-)$1	232	175	185	15.8620
GGUCUGAGGG	chr1:155658227-155658490(-)$1	263	78	88	15.5172
GGGGCGCGGG	chr17:77766505-77766770(-)$1	265	2	12	15.7758
GGGUGGCGGG	chr11:2414887-2415202(+)$1	315	82	92	15.9482
AGGCUggggg	chr15:65477495-65477778(-)$1	283	40	50	15.9482
GGGCUCCGGG	chr3:100428662-100428992(+)$1	330	187	197	17.5862
GGGCUGCGGC	chr15:59280188-59280500(+)$1	312	167	177	17.1551
GGGUUGUGGG	chr19:49864600-49864884(-)$1	284	79	89	16.5517

#otherMatches

#Struct PSSM
OOOOGGGGGG	chr19:54378407-54378660(+)$1	253	82	92	17.5862
GGdddd!!cc	chr8:145691411-145691674(+)$1	263	15	25	15.3448
ZZZBBYYFFF	chr11:64949285-64949565(+)$1	280	251	261	19.9999
!ccc[bb[bb	chr8:87354964-87355252(+)$1	288	44	54	16.9827
eee[hhhhhh	chr21:46954410-46954718(-)$1	308	131	141	16.0344
PPDDDD{CCC	chr6:43028063-43028334(+)$1	271	111	121	16.0344
HHHHHHH:dd	chr11:554413-554711(+)$1	298	138	148	17.5862
b!!ammmma2	chr6:86352836-86353095(-)$1	259	89	99	16.1206
eeeeelllee	chr1:245026188-245026439(-)$1	251	145	155	17.3275
DDKKJJJJJJ	chr22:38713201-38713506(-)$1	305	82	92	14.6551
[a[bb[ccc"	chr17:37824299-37824598(+)$1	299	171	181	21.4655
JJJJJJ}FFF	chr19:6740920-6741218(+)$1	298	275	285	21.4655
YYIIIIIIII	chr3:128211578-128211878(+)$1	300	108	118	17.7586
"""cccpppp	chr21:46644486-46644764(+)$1	278	5	15	17.3275
EE{BB{BB{C	chr7:128864763-128865080(+)$1	317	90	100	15.7758
ddbbcccooo	chr7:77166641-77166910(+)$1	269	177	187	19.3103
cc]eeeeebb	chr16:23690919-23691247(+)$1	328	207	217	15.6034
EEEEE{A{FF	chr18:55711508-55711801(+)$1	293	33	43	14.6551
]ahhhhhhhh	chr1:150547232-150547486(-)$1	254	36	46	16.3793
fffff"""a!	chr1:155532302-155532602(-)$1	300	70	80	15.6034
bb[eeeeenn	chr16:69419254-69419551(-)$1	297	122	132	16.1206
gggg::BB{D	chr19:41770836-41771100(+)$1	264	107	117	15.9482
]dddd]bb22	chr1:205719012-205719256(-)$1	244	74	84	14.8275
]fffffffff	chr22:20862367-20862698(+)$1	331	21	31	15.9482
ee[a[ggggg	chr11:126146196-126146460(+)$1	264	13	23	16.9827
{BBCCC{DDD	chr1:1822219-1822551(-)$1	332	14	24	16.8965
22========	chr7:151216135-151216400(-)$1	265	94	104	17.8448
ddeeeee[am	chr2:48010574-48010873(+)$1	299	20	30	17.3275
mmmdddd22a	chr5:179248515-179248778(+)$1	263	114	124	18.5344
eeeeemmmme	chr16:88922543-88922825(-)$1	282	135	145	14.2241
ooodddd22e	chr4:39784125-39784426(+)$1	301	118	128	19.9137
!!bb[dddd!	chr1:155947795-155948092(-)$1	297	66	76	14.6551
ooooooeeee	chr17:46653865-46654127(-)$1	262	73	83	17.5862
22ccc:hhhh	chr4:83931803-83932095(-)$1	292	33	43	19.3103
{FFFFFFFFF	chr6:149639340-149639582(+)$1	242	49	59	17.5862
eeee[=====	chr9:34634940-34635193(-)$1	253	1	11	16.4655
ee[a[ggggg	chr11:126146105-126146396(+)$1	291	104	114	16.9827
=====ggggg	chr19:42752193-42752463(-)$1	270	35	45	16.2931
hhhhhh[a!!	chr3:184080487-184080763(+)$1	276	90	100	16.1206
ddddffffff	chr6:16129270-16129498(+)$1	228	50	60	16.8965
ee[bb[a"""	chr16:848351-848635(+)$1	284	40	50	16.1206
BB{HHHHHHH	chr17:38278460-38278715(+)$1	255	35	45	18.5344
iii333ccc]	chr19:55595092-55595424(+)$1	332	70	80	16.1206
dddd[bbqqq	chr5:138629685-138630019(+)$1	334	21	31	15.1724
gggggggnnn	chr16:30535266-30535549(-)$1	283	116	126	14.8275
%a[a%%%%%%	chr7:158459783-158460146(-)$1	363	20	30	17.8448
eee[eeeeef	chr5:43121631-43121915(+)$1	284	113	123	15.3448
::DDDD}BB}	chrX:133930864-133931140(-)$1	276	143	153	15.8620
22cccccc[c	chr10:103454574-103454857(-)$1	283	202	212	17.7586
a]bb]abb]a	chr19:39833019-39833296(+)$1	277	222	232	14.9999
::DDDD}BB}	chrX:133930940-133931172(-)$1	232	175	185	15.8620
!!ddddqqqq	chr1:155658227-155658490(-)$1	263	78	88	15.5172
:FFFFFFbb[	chr17:77766505-77766770(-)$1	265	2	12	15.7758
ffffff]hhh	chr11:2414887-2415202(+)$1	315	82	92	15.9482
ndddd]dddd	chr15:65477495-65477778(-)$1	283	40	50	15.9482
a[eeeeeooo	chr3:100428662-100428992(+)$1	330	187	197	17.5862
:cccmmmmcc	chr15:59280188-59280500(+)$1	312	167	177	17.1551
dd]dddd]bb	chr19:49864600-49864884(-)$1	284	79	89	16.5517

#DB
....((((((	chr19:54378407-54378660(+)$1	1	82	92	17.5862
((((((..((	chr8:145691411-145691674(+)$1	1	15	25	15.3448
...))..)))	chr11:64949285-64949565(+)$1	1	251	261	19.9999
.(((.((.((	chr8:87354964-87355252(+)$1	1	44	54	16.9827
(((.((((((	chr21:46954410-46954718(-)$1	1	131	141	16.0344
..((((.(((	chr6:43028063-43028334(+)$1	1	111	121	16.0344
(((((((.((	chr11:554413-554711(+)$1	1	138	148	17.5862
(..(....).	chr6:86352836-86353095(-)$1	1	89	99	16.1206
(((((...))	chr1:245026188-245026439(-)$1	1	145	155	17.3275
((..((((((	chr22:38713201-38713506(-)$1	1	82	92	14.6551
.(.((.(((.	chr17:37824299-37824598(+)$1	1	171	181	21.4655
)))))).)))	chr19:6740920-6741218(+)$1	1	275	285	21.4655
..))))))))	chr3:128211578-128211878(+)$1	1	108	118	17.7586
...(((....	chr21:46644486-46644764(+)$1	1	5	15	17.3275
((.((.((.(	chr7:128864763-128865080(+)$1	1	90	100	15.7758
(((((((...	chr7:77166641-77166910(+)$1	1	177	187	19.3103
)).)))))((	chr16:23690919-23691247(+)$1	1	207	217	15.6034
(((((.(.((	chr18:55711508-55711801(+)$1	1	33	43	14.6551
.)((((((((	chr1:150547232-150547486(-)$1	1	36	46	16.3793
(((((...(.	chr1:155532302-155532602(-)$1	1	70	80	15.6034
((.(((((..	chr16:69419254-69419551(-)$1	1	122	132	16.1206
))))..((.(	chr19:41770836-41771100(+)$1	1	107	117	15.9482
.)))).))..	chr1:205719012-205719256(-)$1	1	74	84	14.8275
.))))))(((	chr22:20862367-20862698(+)$1	1	21	31	15.9482
((.(.(((((	chr11:126146196-126146460(+)$1	1	13	23	16.9827
.(((((.(((	chr1:1822219-1822551(-)$1	1	14	24	16.8965
..))))))))	chr7:151216135-151216400(-)$1	1	94	104	17.8448
))(((((.(.	chr2:48010574-48010873(+)$1	1	20	30	17.3275
...))))..)	chr5:179248515-179248778(+)$1	1	114	124	18.5344
(((((....)	chr16:88922543-88922825(-)$1	1	135	145	14.2241
...))))..)	chr4:39784125-39784426(+)$1	1	118	128	19.9137
..((.((((.	chr1:155947795-155948092(-)$1	1	66	76	14.6551
......))))	chr17:46653865-46654127(-)$1	1	73	83	17.5862
..))).((((	chr4:83931803-83932095(-)$1	1	33	43	19.3103
.(((((((((	chr6:149639340-149639582(+)$1	1	49	59	17.5862
((((.(((((	chr9:34634940-34635193(-)$1	1	1	11	16.4655
((.(.(((((	chr11:126146105-126146396(+)$1	1	104	114	16.9827
((((((((((	chr19:42752193-42752463(-)$1	1	35	45	16.2931
((((((.(..	chr3:184080487-184080763(+)$1	1	90	100	16.1206
))))))))))	chr6:16129270-16129498(+)$1	1	50	60	16.8965
((.((.(...	chr16:848351-848635(+)$1	1	40	50	16.1206
((.(((((((	chr17:38278460-38278715(+)$1	1	35	45	18.5344
)))...))).	chr19:55595092-55595424(+)$1	1	70	80	16.1206
((((.((...	chr5:138629685-138630019(+)$1	1	21	31	15.1724
(((((((...	chr16:30535266-30535549(-)$1	1	116	126	14.8275
.(.(......	chr7:158459783-158460146(-)$1	1	20	30	17.8448
(((.((((((	chr5:43121631-43121915(+)$1	1	113	123	15.3448
..)))).)).	chrX:133930864-133931140(-)$1	1	143	153	15.8620
..)))(((.(	chr10:103454574-103454857(-)$1	1	202	212	17.7586
).)).))).)	chr19:39833019-39833296(+)$1	1	222	232	14.9999
..)))).)).	chrX:133930940-133931172(-)$1	1	175	185	15.8620
..((((....	chr1:155658227-155658490(-)$1	1	78	88	15.5172
.((((((((.	chr17:77766505-77766770(-)$1	1	2	12	15.7758
)))))).)))	chr11:2414887-2415202(+)$1	1	82	92	15.9482
.)))).))))	chr15:65477495-65477778(-)$1	1	40	50	15.9482
(.(((((...	chr3:100428662-100428992(+)$1	1	187	197	17.5862
.(((....))	chr15:59280188-59280500(+)$1	1	167	177	17.1551
)).)))).))	chr19:49864600-49864884(-)$1	1	79	89	16.5517

#PSSM
G : 0.68	g : 0.25	A : 0.03	c : 0.01	
G : 0.75	g : 0.20	a : 0.03	
G : 0.67	g : 0.24	A : 0.03	C : 0.03	U : 0.01	
C : 0.53	c : 0.20	G : 0.13	U : 0.06	a : 0.01	A : 0.01	g : 0.01	
U : 0.58	g : 0.12	G : 0.10	u : 0.06	C : 0.06	c : 0.03	A : 0.01	
G : 0.62	g : 0.24	C : 0.08	U : 0.03	A : 0.01	
C : 0.31	G : 0.17	U : 0.13	A : 0.13	c : 0.13	g : 0.08	a : 0.01	
G : 0.68	g : 0.24	C : 0.03	A : 0.01	U : 0.01	
G : 0.72	g : 0.20	a : 0.03	A : 0.01	U : 0.01	
G : 0.67	g : 0.22	A : 0.06	c : 0.01	C : 0.01	

#score	972.413793103448
#seq	58
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_UTR_m3_run1.nuc.txt

#NT
UUUAUUU	chr4:68358527-68358751(-)$1	224	198	205	19.1578
UUUAUUU	chr10:120070616-120070927(-)$1	311	64	71	19.1578
UUUAAUU	chr6:7401115-7401365(+)$1	250	51	58	15.9999
UUUAUUU	chr1:193020810-193021047(-)$1	237	34	41	19.1578
UUUAUUU	chr11:77336718-77336963(-)$1	245	88	95	19.1578
UUUAAUU	chr7:72361150-72361393(+)$1	243	222	229	15.9999
uuuauuu	chr14:73580906-73581139(+)$1	233	47	54	19.1578
UUUAUUU	chr5:148748368-148748627(+)$1	259	83	90	19.1578
UUUAUUU	chr9:103109552-103109789(-)$1	237	90	97	19.1578
UUUAUUU	chr7:104715038-104715275(+)$1	237	35	42	19.1578
uuuauuu	chr1:111690226-111690500(+)$1	274	15	22	19.1578
UUUAAUU	chr1:15978241-15978492(+)$1	251	240	247	15.9999
uuuauuu	chr16:57207546-57207829(-)$1	283	270	277	19.1578
UUUAUUU	chr8:124383909-124384170(-)$1	261	68	75	19.1578
UUUAAUU	chr9:36599302-36599545(+)$1	243	34	41	15.9999
UUUUUUU	chr3:128859137-128859422(-)$1	285	75	82	15.9999
UUUAUUU	chr6:99864196-99864404(-)$1	208	41	48	19.1578
UUUAAUU	chr4:83277720-83277937(-)$1	217	33	40	15.9999
UUUAUUU	chr2:172582327-172582566(+)$1	239	89	96	19.1578
UUUUUUU	chr20:34319792-34320088(-)$1	296	16	23	15.9999
UUUUUUU	chr3:195792265-195792522(-)$1	257	241	248	15.9999
UUUAAUU	chr2:178187911-178188203(-)$1	292	62	69	15.9999
UUUAUUU	chr2:170471020-170471283(+)$1	263	42	49	19.1578
UUUAUUU	chr17:62486907-62487186(-)$1	279	57	64	19.1578
UUUAUUU	chr18:13734361-13734661(+)$1	300	90	97	19.1578
UUUUUUU	chr4:79792092-79792314(+)$1	222	126	133	15.9999
UUUAUUU	chr3:8940479-8940816(-)$1	337	70	77	19.1578
UUUAUUU	chr4:120415488-120415777(+)$1	289	84	91	19.1578
UUUAAUU	chr1:35641961-35642175(-)$1	214	91	98	15.9999
UUUAUUU	chr4:122737488-122737702(+)$1	214	129	136	19.1578
UUUAUUU	chr7:104714990-104715238(+)$1	248	39	46	19.1578
UUUUUUU	chr8:68144988-68145215(-)$1	227	16	23	15.9999
UUUUUUU	chr2:109421305-109421550(+)$1	245	19	26	15.9999
UUUAUUU	chr7:8198050-8198358(-)$1	308	63	70	19.1578
UUUUUUU	chr12:123694496-123694756(-)$1	260	3	10	15.9999
UUUAUUU	chr1:214786957-214787278(+)$1	321	99	106	19.1578
UUUAUUU	chr19:5645267-5645502(+)$1	235	68	75	19.1578

#otherMatches

#Struct PSSM
e000000	chr11:6569774-6570036(+)$1	262	33	40	19.1578
wwwwwww	chr4:68358527-68358751(-)$1	224	198	205	19.1578
EEEEEee	chr10:120070616-120070927(-)$1	311	64	71	19.1578
dddccc$	chr6:7401115-7401365(+)$1	250	51	58	15.9999
fff[eee	chr1:193020810-193021047(-)$1	237	34	41	19.1578
+++++++	chr11:77336718-77336963(-)$1	245	88	95	19.1578
=======	chr7:72361150-72361393(+)$1	243	222	229	15.9999
$cccqqq	chr14:73580906-73581139(+)$1	233	47	54	19.1578
JJJJJ::	chr5:148748368-148748627(+)$1	259	83	90	19.1578
eeeee]d	chr9:103109552-103109789(-)$1	237	90	97	19.1578
=======	chr7:104715038-104715275(+)$1	237	35	42	19.1578
:::::::	chr1:111690226-111690500(+)$1	274	15	22	19.1578
HHH::::	chr1:15978241-15978492(+)$1	251	240	247	15.9999
FFF::::	chr16:57207546-57207829(-)$1	283	270	277	19.1578
EE{JJJJ	chr8:124383909-124384170(-)$1	261	68	75	19.1578
fffffnn	chr9:36599302-36599545(+)$1	243	34	41	15.9999
JJJJJJJ	chr3:128859137-128859422(-)$1	285	75	82	15.9999
:::ccc[	chr6:99864196-99864404(-)$1	208	41	48	19.1578
"eeeee!	chr4:83277720-83277937(-)$1	217	33	40	15.9999
e::::::	chr2:172582327-172582566(+)$1	239	89	96	19.1578
=======	chr20:34319792-34320088(-)$1	296	16	23	15.9999
:::::::	chr3:195792265-195792522(-)$1	257	241	248	15.9999
:::::::	chr2:178187911-178188203(-)$1	292	62	69	15.9999
EESSSSS	chr2:170471020-170471283(+)$1	263	42	49	19.1578
fffmmmm	chr17:62486907-62487186(-)$1	279	57	64	19.1578
^^^^^^^	chr18:13734361-13734661(+)$1	300	90	97	19.1578
gggg[hh	chr4:79792092-79792314(+)$1	222	126	133	15.9999
hhhhh:g	chr3:8940479-8940816(-)$1	337	70	77	19.1578
d[bbmmm	chr4:120415488-120415777(+)$1	289	84	91	19.1578
cc]ccce	chr1:35641961-35642175(-)$1	214	91	98	15.9999
+++++++	chr4:122737488-122737702(+)$1	214	129	136	19.1578
oohhhhh	chr7:104714990-104715238(+)$1	248	39	46	19.1578
sssssss	chr8:68144988-68145215(-)$1	227	16	23	15.9999
HHHHHHH	chr2:109421305-109421550(+)$1	245	19	26	15.9999
DDD:ddd	chr7:8198050-8198358(-)$1	308	63	70	19.1578
EEEEKKD	chr12:123694496-123694756(-)$1	260	3	10	15.9999
=======	chr1:214786957-214787278(+)$1	321	99	106	19.1578
ggggggg	chr19:5645267-5645502(+)$1	235	68	75	19.1578

#DB
)......	chr11:6569774-6570036(+)$1	1	33	40	19.1578
.......	chr4:68358527-68358751(-)$1	1	198	205	19.1578
(((((((	chr10:120070616-120070927(-)$1	1	64	71	19.1578
((((((.	chr6:7401115-7401365(+)$1	1	51	58	15.9999
(((.(((	chr1:193020810-193021047(-)$1	1	34	41	19.1578
.......	chr11:77336718-77336963(-)$1	1	88	95	19.1578
)))))))	chr7:72361150-72361393(+)$1	1	222	229	15.9999
.(((...	chr14:73580906-73581139(+)$1	1	47	54	19.1578
(((((..	chr5:148748368-148748627(+)$1	1	83	90	19.1578
))))).)	chr9:103109552-103109789(-)$1	1	90	97	19.1578
)))))))	chr7:104715038-104715275(+)$1	1	35	42	19.1578
.......	chr1:111690226-111690500(+)$1	1	15	22	19.1578
)))....	chr1:15978241-15978492(+)$1	1	240	247	15.9999
)))....	chr16:57207546-57207829(-)$1	1	270	277	19.1578
((.((((	chr8:124383909-124384170(-)$1	1	68	75	19.1578
(((((..	chr9:36599302-36599545(+)$1	1	34	41	15.9999
(((((((	chr3:128859137-128859422(-)$1	1	75	82	15.9999
...(((.	chr6:99864196-99864404(-)$1	1	41	48	19.1578
.(((((.	chr4:83277720-83277937(-)$1	1	33	40	15.9999
)......	chr2:172582327-172582566(+)$1	1	89	96	19.1578
(((((((	chr20:34319792-34320088(-)$1	1	16	23	15.9999
.......	chr3:195792265-195792522(-)$1	1	241	248	15.9999
.......	chr2:178187911-178188203(-)$1	1	62	69	15.9999
((.....	chr2:170471020-170471283(+)$1	1	42	49	19.1578
(((....	chr17:62486907-62487186(-)$1	1	57	64	19.1578
.......	chr18:13734361-13734661(+)$1	1	90	97	19.1578
((((.((	chr4:79792092-79792314(+)$1	1	126	133	15.9999
))))).(	chr3:8940479-8940816(-)$1	1	70	77	19.1578
(.((...	chr4:120415488-120415777(+)$1	1	84	91	19.1578
)).))))	chr1:35641961-35642175(-)$1	1	91	98	15.9999
.......	chr4:122737488-122737702(+)$1	1	129	136	19.1578
..)))))	chr7:104714990-104715238(+)$1	1	39	46	19.1578
.......	chr8:68144988-68145215(-)$1	1	16	23	15.9999
(((((((	chr2:109421305-109421550(+)$1	1	19	26	15.9999
(((.(((	chr7:8198050-8198358(-)$1	1	63	70	19.1578
((((..(	chr12:123694496-123694756(-)$1	1	3	10	15.9999
(((((((	chr1:214786957-214787278(+)$1	1	99	106	19.1578
(((((((	chr19:5645267-5645502(+)$1	1	68	75	19.1578

#PSSM
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
A : 0.73	U : 0.18	a : 0.07	
U : 0.73	A : 0.18	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	

#score	683.78947368421
#seq	38
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_transcript_m2_run1.nuc.txt

#NT
GAG	chr21:46835013-46835265(+)$1	252	21	24	9.0000
GAG	chr7:137447783-137447987(-)$1	204	112	115	9.0000
GAG	chr13:114561005-114561272(-)$1	267	241	244	9.0000
gag	chrM:4338-4545(+)$1	207	1	4	9.0000
GAG	chr16:2564823-2565100(+)$1	277	6	9	9.0000
GAG	chr16:2012888-2013097(-)$1	209	47	50	9.0000
GAG	chr9:96433093-96433355(+)$1	262	14	17	9.0000
GAG	chr16:2012897-2013106(-)$1	209	56	59	9.0000
GAG	chr8:1779301-1779528(+)$1	227	4	7	9.0000
gag	chr16:88587379-88587630(+)$1	251	20	23	9.0000
GAG	chr11:2018851-2019099(-)$1	248	20	23	9.0000
GAg	chr17:37309890-37310122(-)$1	232	62	65	9.0000
GAG	chr8:1779375-1779605(+)$1	230	15	18	9.0000
GAG	chr8:1786701-1786959(+)$1	258	29	32	9.0000
GAG	chr16:89022607-89022854(-)$1	247	2	5	9.0000
GAG	chr19:47732769-47733014(-)$1	245	10	13	9.0000
GAG	chr19:47731815-47732055(-)$1	240	3	6	9.0000
GAG	chr16:85648786-85649046(+)$1	260	36	39	9.0000
gag	chr16:88586272-88586549(+)$1	277	17	20	9.0000
GAG	chr16:88556779-88557031(+)$1	252	25	28	9.0000
GAG	chr17:56736448-56736732(-)$1	284	12	15	9.0000
GAG	chr5:43290991-43291285(-)$1	294	63	66	9.0000
GAG	chr19:34876882-34877091(+)$1	209	1	4	9.0000
gag	chr19:1413912-1414157(+)$1	245	151	154	9.0000
gag	chr1:564775-564979(-)$1	204	55	58	9.0000
gag	chr21:39429466-39429765(-)$1	299	2	5	9.0000
GAG	chr11:611844-612083(+)$1	239	0	3	9.0000
GAG	chr22:50034603-50034885(-)$1	282	64	67	9.0000
GAG	chr15:89443964-89444212(-)$1	248	34	37	9.0000
GAG	chr19:49605894-49606150(+)$1	256	14	17	9.0000
GAG	chr1:1283640-1283915(-)$1	275	27	30	9.0000
GAG	chr16:88587519-88587850(+)$1	331	41	44	9.0000
GAG	chrM:7246-7454(+)$1	208	75	78	9.0000
GAG	chr19:47731985-47732272(-)$1	287	32	35	9.0000
GAG	chr1:569798-570099(-)$1	301	22	25	9.0000
GAG	chr5:137896650-137896883(-)$1	233	145	148	9.0000
GAG	chr19:34882095-34882337(+)$1	242	4	7	9.0000
GAG	chr11:65350554-65350798(+)$1	244	1	4	9.0000
gag	chr19:46701112-46701353(-)$1	241	71	74	9.0000
gag	chr4:56963489-56963703(+)$1	214	45	48	9.0000
GAG	chr19:34883001-34883281(+)$1	280	16	19	9.0000
GAG	chr19:34883328-34883590(+)$1	262	39	42	9.0000
gag	chr4:174253099-174253320(-)$1	221	27	30	9.0000
GAG	chr4:53578780-53579010(+)$1	230	14	17	9.0000
GAG	chr22:35738318-35738566(+)$1	248	1	4	9.0000
GAG	chr1:47697054-47697300(-)$1	246	68	71	9.0000
gag	chr8:9629593-9629971(+)$1	378	3	6	9.0000
GAG	chr16:88961283-88961540(-)$1	257	4	7	9.0000
GAG	chr17:62501657-62501934(-)$1	277	1	4	9.0000
GAG	chr19:806810-807050(+)$1	240	19	22	9.0000
GAG	chr5:1326730-1327021(-)$1	291	8	11	9.0000
GAG	chr16:89019104-89019367(-)$1	263	113	116	9.0000
GAG	chr17:74557617-74557884(+)$1	267	3	6	9.0000
GAG	chr5:134260121-134260399(+)$1	278	12	15	9.0000
gag	chr17:80544320-80544571(+)$1	251	18	21	9.0000
gag	chr9:140411320-140411630(-)$1	310	1	4	9.0000
gag	chr1:47696735-47696990(-)$1	255	20	23	9.0000
gag	chr7:932413-932656(+)$1	243	24	27	9.0000
gag	chr8:1779904-1780213(+)$1	309	46	49	9.0000
GAG	chr19:4034969-4035225(+)$1	256	4	7	9.0000
GAG	chr19:10407089-10407336(+)$1	247	32	35	9.0000
GAG	chrM:12083-12307(+)$1	224	100	103	9.0000
gag	chr18:21750365-21750622(-)$1	257	121	124	9.0000
GAG	chr5:1099393-1099669(-)$1	276	38	41	9.0000
GAG	chr9:139565245-139565504(+)$1	259	4	7	9.0000
GAG	chr8:1792434-1792707(+)$1	273	5	8	9.0000
GAG	chrM:9490-9751(+)$1	261	12	15	9.0000
gag	chr12:133272015-133272270(+)$1	255	57	60	9.0000
GAG	chr17:27047515-27047735(+)$1	220	15	18	9.0000
gag	chr2:3297876-3298157(-)$1	281	3	6	9.0000
GAG	chr1:46767588-46767829(-)$1	241	23	26	9.0000
GAG	chr3:128212684-128212948(+)$1	264	63	66	9.0000
gag	chr7:111928873-111929110(+)$1	237	55	58	9.0000
GAG	chr3:128213228-128213471(+)$1	243	22	25	9.0000
gag	chr18:3450121-3450389(+)$1	268	9	12	9.0000
gag	chr1:564779-565014(-)$1	235	90	93	9.0000
GAG	chr22:50021868-50022107(-)$1	239	1	4	9.0000
GAG	chr22:50041193-50041464(-)$1	271	44	47	9.0000
GAG	chr10:18841235-18841509(-)$1	274	65	68	9.0000
GAG	chr11:65349570-65349830(+)$1	260	6	9	9.0000
GAG	chr5:180668721-180668947(-)$1	226	52	55	9.0000
GAG	chr19:2270103-2270377(+)$1	274	0	3	9.0000
GAG	chrM:14362-14583(-)$1	221	51	54	9.0000
GAG	chr22:20111018-20111281(+)$1	263	6	9	9.0000
GAG	chrM:7742-7977(+)$1	235	108	111	9.0000
gag	chr16:88586158-88586424(+)$1	266	34	37	9.0000
GAG	chr11:65192414-65192682(+)$1	268	22	25	9.0000
GAG	chr10:70514845-70515096(+)$1	251	0	3	9.0000
GAg	chr16:1429131-1429384(-)$1	253	30	33	9.0000
GAG	chr19:34883435-34883658(+)$1	223	32	35	9.0000
GAG	chr2:232573552-232573812(+)$1	260	78	81	9.0000
GAG	chr6:27860378-27860621(-)$1	243	57	60	9.0000
GAG	chr16:88567816-88568070(+)$1	254	6	9	9.0000
GAG	chrM:12072-12283(+)$1	211	111	114	9.0000
GAG	chr5:648290-648541(+)$1	251	5	8	9.0000
GAG	chr19:47733678-47733928(-)$1	250	36	39	9.0000
GAG	chr5:651358-651693(+)$1	335	8	11	9.0000

#otherMatches

#Struct PSSM
:::	chr14:39649907-39650212(+)$1	305	9	12	9.0000
fff	chr21:46835013-46835265(+)$1	252	21	24	9.0000
mmc	chr7:137447783-137447987(-)$1	204	112	115	9.0000
iii	chr13:114561005-114561272(-)$1	267	241	244	9.0000
DDD	chrM:4338-4545(+)$1	207	1	4	9.0000
lle	chr16:2564823-2565100(+)$1	277	6	9	9.0000
bbc	chr16:2012888-2013097(-)$1	209	47	50	9.0000
TTT	chr9:96433093-96433355(+)$1	262	14	17	9.0000
bbG	chr16:2012897-2013106(-)$1	209	56	59	9.0000
nnn	chr8:1779301-1779528(+)$1	227	4	7	9.0000
DDD	chr16:88587379-88587630(+)$1	251	20	23	9.0000
:::	chr11:2018851-2019099(-)$1	248	20	23	9.0000
JJJ	chr17:37309890-37310122(-)$1	232	62	65	9.0000
ooo	chr8:1779375-1779605(+)$1	230	15	18	9.0000
eee	chr8:1786701-1786959(+)$1	258	29	32	9.0000
FFF	chr16:89022607-89022854(-)$1	247	2	5	9.0000
rrr	chr19:47732769-47733014(-)$1	245	10	13	9.0000
DDF	chr19:47731815-47732055(-)$1	240	3	6	9.0000
d]b	chr16:85648786-85649046(+)$1	260	36	39	9.0000
:::	chr16:88586272-88586549(+)$1	277	17	20	9.0000
:::	chr16:88556779-88557031(+)$1	252	25	28	9.0000
JJJ	chr17:56736448-56736732(-)$1	284	12	15	9.0000
fff	chr5:43290991-43291285(-)$1	294	63	66	9.0000
EEE	chr19:34876882-34877091(+)$1	209	1	4	9.0000
ddd	chr19:1413912-1414157(+)$1	245	151	154	9.0000
ggg	chr1:564775-564979(-)$1	204	55	58	9.0000
:::	chr21:39429466-39429765(-)$1	299	2	5	9.0000
CCC	chr11:611844-612083(+)$1	239	0	3	9.0000
DPP	chr22:50034603-50034885(-)$1	282	64	67	9.0000
ooo	chr15:89443964-89444212(-)$1	248	34	37	9.0000
(((	chr19:49605894-49606150(+)$1	256	14	17	9.0000
I::	chr1:1283640-1283915(-)$1	275	27	30	9.0000
fff	chr16:88587519-88587850(+)$1	331	41	44	9.0000
fff	chrM:7246-7454(+)$1	208	75	78	9.0000
ggg	chr19:47731985-47732272(-)$1	287	32	35	9.0000
ff%	chr1:569798-570099(-)$1	301	22	25	9.0000
:dd	chr5:137896650-137896883(-)$1	233	145	148	9.0000
::D	chr19:34882095-34882337(+)$1	242	4	7	9.0000
a!!	chr11:65350554-65350798(+)$1	244	1	4	9.0000
:::	chr19:46701112-46701353(-)$1	241	71	74	9.0000
!bb	chr4:56963489-56963703(+)$1	214	45	48	9.0000
KCC	chr19:34883001-34883281(+)$1	280	16	19	9.0000
[cc	chr19:34883328-34883590(+)$1	262	39	42	9.0000
:::	chr4:174253099-174253320(-)$1	221	27	30	9.0000
b""	chr4:53578780-53579010(+)$1	230	14	17	9.0000
:HH	chr22:35738318-35738566(+)$1	248	1	4	9.0000
::b	chr1:47697054-47697300(-)$1	246	68	71	9.0000
HHH	chr8:9629593-9629971(+)$1	378	3	6	9.0000
B{E	chr16:88961283-88961540(-)$1	257	4	7	9.0000
B{D	chr17:62501657-62501934(-)$1	277	1	4	9.0000
eee	chr19:806810-807050(+)$1	240	19	22	9.0000
nnc	chr5:1326730-1327021(-)$1	291	8	11	9.0000
FF{	chr16:89019104-89019367(-)$1	263	113	116	9.0000
JJJ	chr17:74557617-74557884(+)$1	267	3	6	9.0000
:a[	chr5:134260121-134260399(+)$1	278	12	15	9.0000
:::	chr17:80544320-80544571(+)$1	251	18	21	9.0000
:::	chr9:140411320-140411630(-)$1	310	1	4	9.0000
B{E	chr1:47696735-47696990(-)$1	255	20	23	9.0000
###	chr7:932413-932656(+)$1	243	24	27	9.0000
ddd	chr8:1779904-1780213(+)$1	309	46	49	9.0000
ggg	chr19:4034969-4035225(+)$1	256	4	7	9.0000
e]b	chr19:10407089-10407336(+)$1	247	32	35	9.0000
A{F	chrM:12083-12307(+)$1	224	100	103	9.0000
iic	chr18:21750365-21750622(-)$1	257	121	124	9.0000
ppp	chr5:1099393-1099669(-)$1	276	38	41	9.0000
MMM	chr9:139565245-139565504(+)$1	259	4	7	9.0000
ANN	chr8:1792434-1792707(+)$1	273	5	8	9.0000
GGG	chrM:9490-9751(+)$1	261	12	15	9.0000
eee	chr12:133272015-133272270(+)$1	255	57	60	9.0000
FFF	chr17:27047515-27047735(+)$1	220	15	18	9.0000
:::	chr2:3297876-3298157(-)$1	281	3	6	9.0000
CEE	chr1:46767588-46767829(-)$1	241	23	26	9.0000
dnn	chr3:128212684-128212948(+)$1	264	63	66	9.0000
ddd	chr7:111928873-111929110(+)$1	237	55	58	9.0000
eee	chr3:128213228-128213471(+)$1	243	22	25	9.0000
b!!	chr18:3450121-3450389(+)$1	268	9	12	9.0000
ggg	chr1:564779-565014(-)$1	235	90	93	9.0000
::D	chr22:50021868-50022107(-)$1	239	1	4	9.0000
qdd	chr22:50041193-50041464(-)$1	271	44	47	9.0000
ttt	chr10:18841235-18841509(-)$1	274	65	68	9.0000
mmd	chr11:65349570-65349830(+)$1	260	6	9	9.0000
===	chr5:180668721-180668947(-)$1	226	52	55	9.0000
:::	chr19:2270103-2270377(+)$1	274	0	3	9.0000
iii	chrM:14362-14583(-)$1	221	51	54	9.0000
{AO	chr22:20111018-20111281(+)$1	263	6	9	9.0000
ddd	chrM:7742-7977(+)$1	235	108	111	9.0000
+++	chr16:88586158-88586424(+)$1	266	34	37	9.0000
$$$	chr11:65192414-65192682(+)$1	268	22	25	9.0000
:::	chr10:70514845-70515096(+)$1	251	0	3	9.0000
E{C	chr16:1429131-1429384(-)$1	253	30	33	9.0000
::=	chr19:34883435-34883658(+)$1	223	32	35	9.0000
eee	chr2:232573552-232573812(+)$1	260	78	81	9.0000
bqq	chr6:27860378-27860621(-)$1	243	57	60	9.0000
:::	chr16:88567816-88568070(+)$1	254	6	9	9.0000
EEE	chrM:12072-12283(+)$1	211	111	114	9.0000
mmc	chr5:648290-648541(+)$1	251	5	8	9.0000
%%%	chr19:47733678-47733928(-)$1	250	36	39	9.0000
[a[	chr5:651358-651693(+)$1	335	8	11	9.0000

#DB
...	chr14:39649907-39650212(+)$1	1	9	12	9.0000
(((	chr21:46835013-46835265(+)$1	1	21	24	9.0000
..)	chr7:137447783-137447987(-)$1	1	112	115	9.0000
)))	chr13:114561005-114561272(-)$1	1	241	244	9.0000
(((	chrM:4338-4545(+)$1	1	1	4	9.0000
..)	chr16:2564823-2565100(+)$1	1	6	9	9.0000
))(	chr16:2012888-2013097(-)$1	1	47	50	9.0000
...	chr9:96433093-96433355(+)$1	1	14	17	9.0000
)))	chr16:2012897-2013106(-)$1	1	56	59	9.0000
...	chr8:1779301-1779528(+)$1	1	4	7	9.0000
(((	chr16:88587379-88587630(+)$1	1	20	23	9.0000
...	chr11:2018851-2019099(-)$1	1	20	23	9.0000
(((	chr17:37309890-37310122(-)$1	1	62	65	9.0000
...	chr8:1779375-1779605(+)$1	1	15	18	9.0000
(((	chr8:1786701-1786959(+)$1	1	29	32	9.0000
(((	chr16:89022607-89022854(-)$1	1	2	5	9.0000
...	chr19:47732769-47733014(-)$1	1	10	13	9.0000
(((	chr19:47731815-47732055(-)$1	1	3	6	9.0000
).)	chr16:85648786-85649046(+)$1	1	36	39	9.0000
...	chr16:88586272-88586549(+)$1	1	17	20	9.0000
...	chr16:88556779-88557031(+)$1	1	25	28	9.0000
(((	chr17:56736448-56736732(-)$1	1	12	15	9.0000
(((	chr5:43290991-43291285(-)$1	1	63	66	9.0000
(((	chr19:34876882-34877091(+)$1	1	1	4	9.0000
(((	chr19:1413912-1414157(+)$1	1	151	154	9.0000
(((	chr1:564775-564979(-)$1	1	55	58	9.0000
...	chr21:39429466-39429765(-)$1	1	2	5	9.0000
(((	chr11:611844-612083(+)$1	1	0	3	9.0000
(..	chr22:50034603-50034885(-)$1	1	64	67	9.0000
...	chr15:89443964-89444212(-)$1	1	34	37	9.0000
...	chr19:49605894-49606150(+)$1	1	14	17	9.0000
(..	chr1:1283640-1283915(-)$1	1	27	30	9.0000
(((	chr16:88587519-88587850(+)$1	1	41	44	9.0000
)))	chrM:7246-7454(+)$1	1	75	78	9.0000
(((	chr19:47731985-47732272(-)$1	1	32	35	9.0000
((.	chr1:569798-570099(-)$1	1	22	25	9.0000
.((	chr5:137896650-137896883(-)$1	1	145	148	9.0000
..(	chr19:34882095-34882337(+)$1	1	4	7	9.0000
(..	chr11:65350554-65350798(+)$1	1	1	4	9.0000
...	chr19:46701112-46701353(-)$1	1	71	74	9.0000
.((	chr4:56963489-56963703(+)$1	1	45	48	9.0000
.((	chr19:34883001-34883281(+)$1	1	16	19	9.0000
.((	chr19:34883328-34883590(+)$1	1	39	42	9.0000
...	chr4:174253099-174253320(-)$1	1	27	30	9.0000
(..	chr4:53578780-53579010(+)$1	1	14	17	9.0000
.((	chr22:35738318-35738566(+)$1	1	1	4	9.0000
..(	chr1:47697054-47697300(-)$1	1	68	71	9.0000
(((	chr8:9629593-9629971(+)$1	1	3	6	9.0000
(.(	chr16:88961283-88961540(-)$1	1	4	7	9.0000
(.(	chr17:62501657-62501934(-)$1	1	1	4	9.0000
(((	chr19:806810-807050(+)$1	1	19	22	9.0000
..)	chr5:1326730-1327021(-)$1	1	8	11	9.0000
((.	chr16:89019104-89019367(-)$1	1	113	116	9.0000
(((	chr17:74557617-74557884(+)$1	1	3	6	9.0000
.(.	chr5:134260121-134260399(+)$1	1	12	15	9.0000
...	chr17:80544320-80544571(+)$1	1	18	21	9.0000
...	chr9:140411320-140411630(-)$1	1	1	4	9.0000
(.(	chr1:47696735-47696990(-)$1	1	20	23	9.0000
...	chr7:932413-932656(+)$1	1	24	27	9.0000
)))	chr8:1779904-1780213(+)$1	1	46	49	9.0000
(((	chr19:4034969-4035225(+)$1	1	4	7	9.0000
).)	chr19:10407089-10407336(+)$1	1	32	35	9.0000
(.(	chrM:12083-12307(+)$1	1	100	103	9.0000
))(	chr18:21750365-21750622(-)$1	1	121	124	9.0000
...	chr5:1099393-1099669(-)$1	1	38	41	9.0000
...	chr9:139565245-139565504(+)$1	1	4	7	9.0000
(..	chr8:1792434-1792707(+)$1	1	5	8	9.0000
(((	chrM:9490-9751(+)$1	1	12	15	9.0000
(((	chr12:133272015-133272270(+)$1	1	57	60	9.0000
(((	chr17:27047515-27047735(+)$1	1	15	18	9.0000
...	chr2:3297876-3298157(-)$1	1	3	6	9.0000
(((	chr1:46767588-46767829(-)$1	1	23	26	9.0000
(..	chr3:128212684-128212948(+)$1	1	63	66	9.0000
)))	chr7:111928873-111929110(+)$1	1	55	58	9.0000
(((	chr3:128213228-128213471(+)$1	1	22	25	9.0000
(..	chr18:3450121-3450389(+)$1	1	9	12	9.0000
(((	chr1:564779-565014(-)$1	1	90	93	9.0000
..(	chr22:50021868-50022107(-)$1	1	1	4	9.0000
.))	chr22:50041193-50041464(-)$1	1	44	47	9.0000
...	chr10:18841235-18841509(-)$1	1	65	68	9.0000
..)	chr11:65349570-65349830(+)$1	1	6	9	9.0000
(((	chr5:180668721-180668947(-)$1	1	52	55	9.0000
...	chr19:2270103-2270377(+)$1	1	0	3	9.0000
(((	chrM:14362-14583(-)$1	1	51	54	9.0000
.(.	chr22:20111018-20111281(+)$1	1	6	9	9.0000
)))	chrM:7742-7977(+)$1	1	108	111	9.0000
...	chr16:88586158-88586424(+)$1	1	34	37	9.0000
...	chr11:65192414-65192682(+)$1	1	22	25	9.0000
...	chr10:70514845-70515096(+)$1	1	0	3	9.0000
(.(	chr16:1429131-1429384(-)$1	1	30	33	9.0000
..(	chr19:34883435-34883658(+)$1	1	32	35	9.0000
)))	chr2:232573552-232573812(+)$1	1	78	81	9.0000
(..	chr6:27860378-27860621(-)$1	1	57	60	9.0000
...	chr16:88567816-88568070(+)$1	1	6	9	9.0000
)))	chrM:12072-12283(+)$1	1	111	114	9.0000
..)	chr5:648290-648541(+)$1	1	5	8	9.0000
...	chr19:47733678-47733928(-)$1	1	36	39	9.0000
.(.	chr5:651358-651693(+)$1	1	8	11	9.0000

#PSSM
G : 0.76	g : 0.23	
A : 0.76	a : 0.23	
G : 0.74	g : 0.25	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_transcript_m3_run1.nuc.txt

#NT
AGCCC	chr11:62392226-62392476(-)$1	250	41	46	14.9999
AGCCC	chr19:3208007-3208258(+)$1	251	201	206	14.9999
AGCCC	chr20:33590279-33590557(-)$1	278	36	41	14.9999
AGCCC	chr19:12811578-12811884(-)$1	306	89	94	14.9999
AGCCC	chr17:79801478-79801725(-)$1	247	54	59	14.9999
AGCCC	chr17:1478203-1478477(-)$1	274	113	118	14.9999
AGCCC	chr17:78938818-78939087(+)$1	269	87	92	14.9999
AGCCC	chr2:219270324-219270560(+)$1	236	17	22	14.9999
AGCCC	chr16:30785416-30785698(+)$1	282	130	135	14.9999
AGCCC	chr6:33541036-33541307(-)$1	271	102	107	14.9999
AGCCC	chr2:113890507-113890767(+)$1	260	171	176	14.9999
AGCCC	chr16:27472497-27472772(-)$1	275	3	8	14.9999
AGCCC	chr12:54744567-54744827(+)$1	260	143	148	14.9999
agccc	chr20:36032772-36033041(+)$1	269	29	34	14.9999
AGCCC	chr11:64620471-64620721(-)$1	250	181	186	14.9999
AGCCC	chr12:3395150-3395388(+)$1	238	142	147	14.9999
AGCCC	chr17:79918554-79918788(-)$1	234	142	147	14.9999
AGCCC	chr17:27400908-27401165(-)$1	257	127	132	14.9999
AGCCC	chr1:155106679-155106900(+)$1	221	50	55	14.9999
AGCCC	chr16:46964023-46964282(+)$1	259	124	129	14.9999
AGCCC	chr14:77941178-77941427(-)$1	249	71	76	14.9999
AGCCC	chr20:36757227-36757554(-)$1	327	107	112	14.9999
AGCCC	chr9:5786526-5786793(-)$1	267	27	32	14.9999
AGCCC	chr1:205501215-205501528(+)$1	313	37	42	14.9999
AGCCC	chr22:38615594-38615845(-)$1	251	48	53	14.9999
AGCCC	chr2:219269548-219269820(+)$1	272	8	13	14.9999
AGCCC	chr11:61116950-61117272(-)$1	322	224	229	14.9999
AGCCC	chr9:137328529-137328791(+)$1	262	4	9	14.9999
AGCCC	chr11:1773921-1774224(-)$1	303	192	197	14.9999
AGCCC	chr22:35743754-35744009(+)$1	255	29	34	14.9999
AGCCC	chr19:3208071-3208331(+)$1	260	137	142	14.9999
AGCCC	chr21:46270593-46270806(-)$1	213	161	166	14.9999
AGCCC	chr20:62271402-62271635(-)$1	233	114	119	14.9999
AGCCC	chr19:41937782-41938083(-)$1	301	155	160	14.9999
AGCCC	chr16:31501781-31502006(-)$1	225	161	166	14.9999
AGCCC	chr16:2648001-2648280(+)$1	279	240	245	14.9999
AGCCC	chr19:1497622-1497888(+)$1	266	32	37	14.9999
AGCCC	chr7:47317181-47317424(-)$1	243	119	124	14.9999
AGCCC	chr20:30754413-30754666(+)$1	253	215	220	14.9999
AGCCC	chr22:22118095-22118363(-)$1	268	27	32	14.9999
AGCCC	chr7:4802315-4802588(+)$1	273	118	123	14.9999
AGCCC	chr17:76168158-76168427(+)$1	269	130	135	14.9999
AGCCC	chr6:38121093-38121347(+)$1	254	111	116	14.9999
AGCCC	chr19:11033059-11033316(+)$1	257	66	71	14.9999
AGCCC	chr19:582825-583091(+)$1	266	129	134	14.9999
AGCCC	chr11:64978806-64979096(+)$1	290	234	239	14.9999
AGCCC	chr9:136628662-136628939(-)$1	277	182	187	14.9999
AGCCC	chr19:47112571-47112791(+)$1	220	109	114	14.9999
AGCCC	chr7:2701688-2701937(+)$1	249	227	232	14.9999
AGCCC	chr17:72833850-72834184(+)$1	334	166	171	14.9999
AGCCC	chr1:27733538-27733791(-)$1	253	205	210	14.9999
AGCCC	chr5:6372314-6372672(-)$1	358	175	180	14.9999
AGCCC	chr17:39911179-39911453(-)$1	274	141	146	14.9999

#otherMatches

#Struct PSSM
HHHHH	chr16:2648761-2649008(+)$1	247	113	118	14.9999
H{BB:	chr11:62392226-62392476(-)$1	250	41	46	14.9999
d::::	chr19:3208007-3208258(+)$1	251	201	206	14.9999
DDD::	chr20:33590279-33590557(-)$1	278	36	41	14.9999
:GGGG	chr19:12811578-12811884(-)$1	306	89	94	14.9999
ff:::	chr17:79801478-79801725(-)$1	247	54	59	14.9999
FFFFF	chr17:1478203-1478477(-)$1	274	113	118	14.9999
gglll	chr17:78938818-78939087(+)$1	269	87	92	14.9999
:ffff	chr2:219270324-219270560(+)$1	236	17	22	14.9999
::ccc	chr16:30785416-30785698(+)$1	282	130	135	14.9999
fffcc	chr6:33541036-33541307(-)$1	271	102	107	14.9999
ddlll	chr2:113890507-113890767(+)$1	260	171	176	14.9999
ggggm	chr16:27472497-27472772(-)$1	275	3	8	14.9999
88888	chr12:54744567-54744827(+)$1	260	143	148	14.9999
dddd]	chr20:36032772-36033041(+)$1	269	29	34	14.9999
]cccb	chr11:64620471-64620721(-)$1	250	181	186	14.9999
CA{FF	chr12:3395150-3395388(+)$1	238	142	147	14.9999
DDDhh	chr17:79918554-79918788(-)$1	234	142	147	14.9999
DDDDZ	chr17:27400908-27401165(-)$1	257	127	132	14.9999
:DDDD	chr1:155106679-155106900(+)$1	221	50	55	14.9999
ffff[	chr16:46964023-46964282(+)$1	259	124	129	14.9999
ggggg	chr14:77941178-77941427(-)$1	249	71	76	14.9999
CCZZZ	chr20:36757227-36757554(-)$1	327	107	112	14.9999
:::::	chr9:5786526-5786793(-)$1	267	27	32	14.9999
ee'''	chr1:205501215-205501528(+)$1	313	37	42	14.9999
cc]dd	chr22:38615594-38615845(-)$1	251	48	53	14.9999
DDD{E	chr2:219269548-219269820(+)$1	272	8	13	14.9999
nccc:	chr11:61116950-61117272(-)$1	322	224	229	14.9999
EGGGG	chr9:137328529-137328791(+)$1	262	4	9	14.9999
cc!!e	chr11:1773921-1774224(-)$1	303	192	197	14.9999
eeeel	chr22:35743754-35744009(+)$1	255	29	34	14.9999
peeee	chr19:3208071-3208331(+)$1	260	137	142	14.9999
FFFFF	chr21:46270593-46270806(-)$1	213	161	166	14.9999
eeBBF	chr20:62271402-62271635(-)$1	233	114	119	14.9999
ggggg	chr19:41937782-41938083(-)$1	301	155	160	14.9999
occcb	chr16:31501781-31502006(-)$1	225	161	166	14.9999
ooeee	chr16:2648001-2648280(+)$1	279	240	245	14.9999
:bboo	chr19:1497622-1497888(+)$1	266	32	37	14.9999
:bb!!	chr7:47317181-47317424(-)$1	243	119	124	14.9999
FFFFY	chr20:30754413-30754666(+)$1	253	215	220	14.9999
KBB{G	chr22:22118095-22118363(-)$1	268	27	32	14.9999
2bb22	chr7:4802315-4802588(+)$1	273	118	123	14.9999
ccc[a	chr17:76168158-76168427(+)$1	269	130	135	14.9999
DD{EE	chr6:38121093-38121347(+)$1	254	111	116	14.9999
GG:dd	chr19:11033059-11033316(+)$1	257	66	71	14.9999
EE::d	chr19:582825-583091(+)$1	266	129	134	14.9999
fbb""	chr11:64978806-64979096(+)$1	290	234	239	14.9999
:FFFF	chr9:136628662-136628939(-)$1	277	182	187	14.9999
eee$$	chr19:47112571-47112791(+)$1	220	109	114	14.9999
ff22b	chr7:2701688-2701937(+)$1	249	227	232	14.9999
qqqqq	chr17:72833850-72834184(+)$1	334	166	171	14.9999
cccbb	chr1:27733538-27733791(-)$1	253	205	210	14.9999
hhhhh	chr5:6372314-6372672(-)$1	358	175	180	14.9999
:dddd	chr17:39911179-39911453(-)$1	274	141	146	14.9999

#DB
(((((	chr16:2648761-2649008(+)$1	1	113	118	14.9999
(.((.	chr11:62392226-62392476(-)$1	1	41	46	14.9999
)....	chr19:3208007-3208258(+)$1	1	201	206	14.9999
(((..	chr20:33590279-33590557(-)$1	1	36	41	14.9999
.))))	chr19:12811578-12811884(-)$1	1	89	94	14.9999
))...	chr17:79801478-79801725(-)$1	1	54	59	14.9999
(((((	chr17:1478203-1478477(-)$1	1	113	118	14.9999
((...	chr17:78938818-78939087(+)$1	1	87	92	14.9999
.((((	chr2:219270324-219270560(+)$1	1	17	22	14.9999
..(((	chr16:30785416-30785698(+)$1	1	130	135	14.9999
)))((	chr6:33541036-33541307(-)$1	1	102	107	14.9999
((...	chr2:113890507-113890767(+)$1	1	171	176	14.9999
((((.	chr16:27472497-27472772(-)$1	1	3	8	14.9999
.....	chr12:54744567-54744827(+)$1	1	143	148	14.9999
)))).	chr20:36032772-36033041(+)$1	1	29	34	14.9999
.))))	chr11:64620471-64620721(-)$1	1	181	186	14.9999
((.((	chr12:3395150-3395388(+)$1	1	142	147	14.9999
)))((	chr17:79918554-79918788(-)$1	1	142	147	14.9999
)))).	chr17:27400908-27401165(-)$1	1	127	132	14.9999
.((((	chr1:155106679-155106900(+)$1	1	50	55	14.9999
((((.	chr16:46964023-46964282(+)$1	1	124	129	14.9999
(((((	chr14:77941178-77941427(-)$1	1	71	76	14.9999
))...	chr20:36757227-36757554(-)$1	1	107	112	14.9999
.....	chr9:5786526-5786793(-)$1	1	27	32	14.9999
((...	chr1:205501215-205501528(+)$1	1	37	42	14.9999
)).))	chr22:38615594-38615845(-)$1	1	48	53	14.9999
(((.(	chr2:219269548-219269820(+)$1	1	8	13	14.9999
.))).	chr11:61116950-61117272(-)$1	1	224	229	14.9999
(((((	chr9:137328529-137328791(+)$1	1	4	9	14.9999
((..(	chr11:1773921-1774224(-)$1	1	192	197	14.9999
((((.	chr22:35743754-35744009(+)$1	1	29	34	14.9999
.))))	chr19:3208071-3208331(+)$1	1	137	142	14.9999
(((((	chr21:46270593-46270806(-)$1	1	161	166	14.9999
)))))	chr20:62271402-62271635(-)$1	1	114	119	14.9999
))))(	chr19:41937782-41938083(-)$1	1	155	160	14.9999
.)))(	chr16:31501781-31502006(-)$1	1	161	166	14.9999
..)))	chr16:2648001-2648280(+)$1	1	240	245	14.9999
.((..	chr19:1497622-1497888(+)$1	1	32	37	14.9999
.((..	chr7:47317181-47317424(-)$1	1	119	124	14.9999
)))).	chr20:30754413-30754666(+)$1	1	215	220	14.9999
.((.(	chr22:22118095-22118363(-)$1	1	27	32	14.9999
.))..	chr7:4802315-4802588(+)$1	1	118	123	14.9999
(((.(	chr17:76168158-76168427(+)$1	1	130	135	14.9999
((.((	chr6:38121093-38121347(+)$1	1	111	116	14.9999
((.((	chr19:11033059-11033316(+)$1	1	66	71	14.9999
))..(	chr19:582825-583091(+)$1	1	129	134	14.9999
)((..	chr11:64978806-64979096(+)$1	1	234	239	14.9999
.))))	chr9:136628662-136628939(-)$1	1	182	187	14.9999
(((..	chr19:47112571-47112791(+)$1	1	109	114	14.9999
))..)	chr7:2701688-2701937(+)$1	1	227	232	14.9999
.....	chr17:72833850-72834184(+)$1	1	166	171	14.9999
(((((	chr1:27733538-27733791(-)$1	1	205	210	14.9999
(((((	chr5:6372314-6372672(-)$1	1	175	180	14.9999
.((((	chr17:39911179-39911453(-)$1	1	141	146	14.9999

#PSSM
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	

#score	809.9999999999995
#seq	54
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_transcript_m1_run2.nuc.txt

#NT
uguaugugugugugug	chr19:19185386-19185681(+)$1	295	142	158	36.3636
AGUGUGGGUGUGUGAG	chr17:79963632-79963961(+)$1	329	138	154	28.3636
ugggggugugugugug	chr17:79964135-79964385(+)$1	250	36	52	32.9090
ugugugugugauugug	chr20:62362941-62363241(+)$1	300	24	40	32.6363
ugugugugcgugugug	chr7:157612545-157612856(-)$1	311	3	19	36.9090
ugugugugugugugug	chr14:55145104-55145362(+)$1	258	47	63	41.0000
uguguguguguguuug	chr14:103571427-103571682(+)$1	255	94	110	36.4545
ugugugugugugugug	chr17:36882508-36882830(+)$1	322	116	132	41.0000
ugugugagugccugug	chr17:79048359-79048661(+)$1	302	20	36	28.6363
ugugugugugugugug	chr20:57270066-57270371(+)$1	305	3	19	41.0000
uguguguguguguaua	chr7:98479373-98479580(+)$1	207	1	17	31.9090
ugugugugugugugug	chr7:6741901-6742151(-)$1	250	12	28	41.0000
ugugugugugugugug	chr11:93454836-93455040(+)$1	204	0	16	41.0000
ugugugugugugcgug	chr16:81578322-81578572(+)$1	250	14	30	36.7272
ugugugugugugugug	chr6:144952245-144952504(+)$1	259	129	145	41.0000
uguguguguuugugug	chr7:98479359-98479573(+)$1	214	5	21	36.6363
ugugugugugugugug	chr22:37908348-37908616(-)$1	268	90	106	41.0000
Agugagugugugugug	chr1:48692521-48692828(+)$1	307	90	106	33.0000
ugugagggugugugug	chr4:3364519-3364786(+)$1	267	53	69	33.7272
ugugugugugugcgug	chr20:61588915-61589148(+)$1	233	167	183	36.7272
ugugugugugugugug	chr9:137231187-137231495(+)$1	308	174	190	41.0000
ugugugugugugugug	chr12:76462366-76462662(-)$1	296	104	120	41.0000
guggugugugugugug	chr14:69365467-69365733(-)$1	266	43	59	28.0000
ugugugugugauugug	chr21:46873006-46873283(+)$1	277	75	91	32.6363
gcagugugugugugug	chr21:45378900-45379177(+)$1	277	90	106	27.9090
ugugugagugugugug	chr8:140803356-140803688(-)$1	332	20	36	37.4545
ugggggcgugugugug	chr17:79963799-79964027(+)$1	228	172	188	29.3636
ugugugcaugugugug	chr14:105338866-105339117(+)$1	251	32	48	33.4545
uguguguguuugugug	chr7:98479217-98479419(+)$1	202	147	163	36.6363
UGUGUGAAugugugug	chr2:121035500-121035868(+)$1	368	59	75	33.4545
ugugugugugugagug	chr4:3369973-3370300(+)$1	327	158	174	36.6363
ugugugugugugugug	chr10:134569112-134569380(+)$1	268	8	24	41.0000
ugUGAGCGUGUGUGUG	chr13:26828245-26828454(+)$1	209	91	107	33.7272
ugugugugugugugug	chr3:129113261-129113522(-)$1	261	99	115	41.0000
UGAGUGUGUGAGUGUG	chr1:109642853-109643059(+)$1	206	57	73	32.6363
uguguguguaugugug	chr15:60834391-60834714(-)$1	323	170	186	36.6363
ggugugcaugugugug	chr1:1276301-1276538(-)$1	237	93	109	29.3636
ugugcgggucugugug	chr16:1776938-1777295(+)$1	357	298	314	28.9090
ugugugagugugagug	chr9:132261068-132261351(+)$1	283	41	57	33.0909
ugugugugcgugugug	chr20:62363591-62363945(+)$1	354	161	177	36.9090
ugugugugcgugugug	chr7:157612948-157613303(-)$1	355	47	63	36.9090
UGUGAGUGCGGGUGUG	chr20:62901291-62901554(+)$1	263	39	55	28.8181
uguguguaugugugug	chr11:68832496-68832827(+)$1	331	118	134	37.0000
ugcauguguguguaug	chr21:45146764-45147051(+)$1	287	103	119	27.6363
gguguguguguauaug	chr17:79964205-79964410(+)$1	205	16	32	28.0909
uguguguuuguguguu	chr17:7078275-7078515(-)$1	240	79	95	31.9090
ugugugugaaugugug	chr2:3141887-3142165(-)$1	278	11	27	32.2727
ugugugugugugugug	chr11:93454847-93455053(+)$1	206	1	17	41.0000
ugugagggugagugug	chr3:13415335-13415626(-)$1	291	47	63	29.6363
ugugugugugugcgug	chr16:81578308-81578522(+)$1	214	28	44	36.7272
uguguguaugugugug	chr2:240267273-240267509(-)$1	236	205	221	37.0000
ugugggugggugugug	chr17:79112071-79112332(-)$1	261	59	75	32.7272
ugugugugugugugug	chr19:2336873-2337113(+)$1	240	25	41	41.0000
uguguguguguuugug	chr8:129053748-129054000(+)$1	252	64	80	36.7272

#otherMatches

#Struct PSSM
=============[bb	chr3:48467074-48467332(-)$1	258	85	101	41.0000
===============]	chr19:19185386-19185681(+)$1	295	142	158	36.3636
DJJJJJJJJJJJJIII	chr17:79963632-79963961(+)$1	329	138	154	28.3636
uuuuuuuuiiiiiiii	chr17:79964135-79964385(+)$1	250	36	52	32.9090
GGGG{DDDDLLLDDDD	chr20:62362941-62363241(+)$1	300	24	40	32.6363
:::::::JJJJJJJJJ	chr7:157612545-157612856(-)$1	311	3	19	36.9090
oooooccc]ccc22cc	chr14:55145104-55145362(+)$1	258	47	63	41.0000
tttttttttta]eeee	chr14:103571427-103571682(+)$1	255	94	110	36.4545
:dddd[ccc[ccc[bb	chr17:36882508-36882830(+)$1	322	116	132	41.0000
[bboooooobb]a]==	chr17:79048359-79048661(+)$1	302	20	36	28.6363
:::::::::::::JJJ	chr20:57270066-57270371(+)$1	305	3	19	41.0000
::EEEEEKKEEEEELL	chr7:98479373-98479580(+)$1	207	1	17	31.9090
c:::::::::::::::	chr7:6741901-6742151(-)$1	250	12	28	41.0000
ccc[ccc[a[dddd$$	chr11:93454836-93455040(+)$1	204	0	16	41.0000
=oooooo=========	chr16:81578322-81578572(+)$1	250	14	30	36.7272
E:::::::::::::::	chr6:144952245-144952504(+)$1	259	129	145	41.0000
=======!!ccc"""e	chr7:98479359-98479573(+)$1	214	5	21	36.6363
d::CCCMMMMA{BB{D	chr22:37908348-37908616(-)$1	268	90	106	41.0000
a]dddd]bb]a:::::	chr1:48692521-48692828(+)$1	307	90	106	33.0000
777777a]a]adddd2	chr4:3364519-3364786(+)$1	267	53	69	33.7272
nnnnna]=========	chr20:61588915-61589148(+)$1	233	167	183	36.7272
333a]eeeee]fffff	chr9:137231187-137231495(+)$1	308	174	190	41.0000
i[bb[bb[ccc[eeee	chr12:76462366-76462662(-)$1	296	104	120	41.0000
EEEEECCCQQQQQQQQ	chr14:69365467-69365733(-)$1	266	43	59	28.0000
JJJJJJJJJMMMMBB{	chr21:46873006-46873283(+)$1	277	75	91	32.6363
ffff::::::::a[a[	chr21:45378900-45379177(+)$1	277	90	106	27.9090
bnnnnnbb]ffffff]	chr8:140803356-140803688(-)$1	332	20	36	37.4545
:ccc[===========	chr17:79963799-79964027(+)$1	228	172	188	29.3636
iiiiiiiii]bbeeee	chr14:105338866-105339117(+)$1	251	32	48	33.4545
FFFFFJJJJJJJJJJ=	chr7:98479217-98479419(+)$1	202	147	163	36.6363
hhhhh!!dddd####c	chr2:121035500-121035868(+)$1	368	59	75	33.4545
h::::::::::::ggg	chr4:3369973-3370300(+)$1	327	158	174	36.6363
CCC::bb[cccooooo	chr10:134569112-134569380(+)$1	268	8	24	41.0000
[ccc[bb"""ccc[a#	chr13:26828245-26828454(+)$1	209	91	107	33.7272
ccc]a]hhhhhhhh99	chr3:129113261-129113522(-)$1	261	99	115	41.0000
:::::::ccc[=====	chr1:109642853-109643059(+)$1	206	57	73	32.6363
E::::a[ccc[ccc[c	chr15:60834391-60834714(-)$1	323	170	186	36.6363
[aqqqqqqqqa]ffff	chr1:1276301-1276538(-)$1	237	93	109	29.3636
3ddddeeeeennnnne	chr16:1776938-1777295(+)$1	357	298	314	28.9090
#ccc[ccc[a!!bb[d	chr9:132261068-132261351(+)$1	283	41	57	33.0909
d::::::dddd[a[ap	chr20:62363591-62363945(+)$1	354	161	177	36.9090
:::::::ffffffmmm	chr7:157612948-157613303(-)$1	355	47	63	36.9090
KKCCC{A{BBKKHHHH	chr20:62901291-62901554(+)$1	263	39	55	28.8181
qqqqqffffff77777	chr11:68832496-68832827(+)$1	331	118	134	37.0000
=======22ffffffd	chr21:45146764-45147051(+)$1	287	103	119	27.6363
[bb=============	chr17:79964205-79964410(+)$1	205	16	32	28.0909
::::::::::::::::	chr17:7078275-7078515(-)$1	240	79	95	31.9090
HHHHHHLLLDDDDKKJ	chr2:3141887-3142165(-)$1	278	11	27	32.2727
:::iiiiiiiiioooo	chr11:93454847-93455053(+)$1	206	1	17	41.0000
DKKFFFFFF{BBFFFF	chr3:13415335-13415626(-)$1	291	47	63	29.6363
=oooooo=========	chr16:81578308-81578522(+)$1	214	28	44	36.7272
####a[bbrrrrrrrr	chr2:240267273-240267509(-)$1	236	205	221	37.0000
hhhh[ccc[eeeee[=	chr17:79112071-79112332(-)$1	261	59	75	32.7272
DMMMMFFFFFF::::=	chr19:2336873-2337113(+)$1	240	25	41	41.0000
rrrrrrrccc55555=	chr8:129053748-129054000(+)$1	252	64	80	36.7272

#DB
(((((((((((((.((	chr3:48467074-48467332(-)$1	1	85	101	41.0000
))))))))))))))).	chr19:19185386-19185681(+)$1	1	142	158	36.3636
((((((((((((((((	chr17:79963632-79963961(+)$1	1	138	154	28.3636
........))))))))	chr17:79964135-79964385(+)$1	1	36	52	32.9090
((((.((((...((((	chr20:62362941-62363241(+)$1	1	24	40	32.6363
.......(((((((((	chr7:157612545-157612856(-)$1	1	3	19	36.9090
.....))).)))..))	chr14:55145104-55145362(+)$1	1	47	63	41.0000
..........).))))	chr14:103571427-103571682(+)$1	1	94	110	36.4545
.((((.(((.(((.((	chr17:36882508-36882830(+)$1	1	116	132	41.0000
.((......)).).))	chr17:79048359-79048661(+)$1	1	20	36	28.6363
.............(((	chr20:57270066-57270371(+)$1	1	3	19	41.0000
..(((((..(((((..	chr7:98479373-98479580(+)$1	1	1	17	31.9090
)...............	chr7:6741901-6742151(-)$1	1	12	28	41.0000
(((.(((.(.((((..	chr11:93454836-93455040(+)$1	1	0	16	41.0000
(......)))))))))	chr16:81578322-81578572(+)$1	1	14	30	36.7272
(...............	chr6:144952245-144952504(+)$1	1	129	145	41.0000
(((((((..(((...(	chr7:98479359-98479573(+)$1	1	5	21	36.6363
)..(((....(.((.(	chr22:37908348-37908616(-)$1	1	90	106	41.0000
).)))).)).).....	chr1:48692521-48692828(+)$1	1	90	106	33.0000
......).).))))).	chr4:3364519-3364786(+)$1	1	53	69	33.7272
.....).)))))))))	chr20:61588915-61589148(+)$1	1	167	183	36.7272
...).))))).)))))	chr9:137231187-137231495(+)$1	1	174	190	41.0000
(.((.((.(((.((((	chr12:76462366-76462662(-)$1	1	104	120	41.0000
((((((((........	chr14:69365467-69365733(-)$1	1	43	59	28.0000
(((((((((....((.	chr21:46873006-46873283(+)$1	1	75	91	32.6363
))))........(.(.	chr21:45378900-45379177(+)$1	1	90	106	27.9090
(.....)).)))))).	chr8:140803356-140803688(-)$1	1	20	36	37.4545
.(((.(((((((((((	chr17:79963799-79964027(+)$1	1	172	188	29.3636
))))))))).))))))	chr14:105338866-105339117(+)$1	1	32	48	33.4545
)))))))))))))))(	chr7:98479217-98479419(+)$1	1	147	163	36.6363
(((((..((((....(	chr2:121035500-121035868(+)$1	1	59	75	33.4545
)............(((	chr4:3369973-3370300(+)$1	1	158	174	36.6363
(((..((.(((.....	chr10:134569112-134569380(+)$1	1	8	24	41.0000
.(((.((...(((.(.	chr13:26828245-26828454(+)$1	1	91	107	33.7272
))).).))))))))..	chr3:129113261-129113522(-)$1	1	99	115	41.0000
.......(((.(((((	chr1:109642853-109643059(+)$1	1	57	73	32.6363
)....(.(((.(((.(	chr15:60834391-60834714(-)$1	1	170	186	36.6363
.(........).))))	chr1:1276301-1276538(-)$1	1	93	109	29.3636
.))))(((((.....)	chr16:1776938-1777295(+)$1	1	298	314	28.9090
.(((.(((.(..((.(	chr9:132261068-132261351(+)$1	1	41	57	33.0909
)......((((.(.(.	chr20:62363591-62363945(+)$1	1	161	177	36.9090
.......((((((...	chr7:157612948-157613303(-)$1	1	47	63	36.9090
..(((.(.((..((((	chr20:62901291-62901554(+)$1	1	39	55	28.8181
.....)))))).....	chr11:68832496-68832827(+)$1	1	118	134	37.0000
)))))))..))))))(	chr21:45146764-45147051(+)$1	1	103	119	27.6363
.(((((((((((((((	chr17:79964205-79964410(+)$1	1	16	32	28.0909
................	chr17:7078275-7078515(-)$1	1	79	95	31.9090
((((((...((((..(	chr2:3141887-3142165(-)$1	1	11	27	32.2727
...(((((((((....	chr11:93454847-93455053(+)$1	1	1	17	41.0000
(..((((((.((((((	chr3:13415335-13415626(-)$1	1	47	63	29.6363
(......)))))))))	chr16:81578308-81578522(+)$1	1	28	44	36.7272
....(.((........	chr2:240267273-240267509(-)$1	1	205	221	37.0000
((((.(((.(((((.(	chr17:79112071-79112332(-)$1	1	59	75	32.7272
(....((((((....(	chr19:2336873-2337113(+)$1	1	25	41	41.0000
.......))).....)	chr8:129053748-129054000(+)$1	1	64	80	36.7272

#PSSM
u : 0.83	g : 0.07	U : 0.05	A : 0.03	
g : 0.89	G : 0.07	u : 0.01	c : 0.01	
u : 0.81	U : 0.07	g : 0.05	a : 0.01	A : 0.01	c : 0.01	
g : 0.87	G : 0.09	a : 0.03	
u : 0.78	U : 0.05	g : 0.05	a : 0.05	A : 0.03	c : 0.01	
g : 0.90	G : 0.09	
u : 0.74	a : 0.05	g : 0.05	c : 0.05	U : 0.03	G : 0.01	A : 0.01	C : 0.01	
g : 0.81	G : 0.07	a : 0.07	A : 0.01	u : 0.01	
u : 0.83	U : 0.05	c : 0.05	C : 0.01	a : 0.01	g : 0.01	
g : 0.83	G : 0.07	u : 0.03	a : 0.03	c : 0.01	
u : 0.85	a : 0.05	U : 0.03	c : 0.01	A : 0.01	G : 0.01	
g : 0.83	G : 0.07	u : 0.05	c : 0.01	a : 0.01	
u : 0.83	U : 0.07	c : 0.05	a : 0.03	
g : 0.85	G : 0.07	a : 0.05	u : 0.01	
u : 0.92	U : 0.05	A : 0.01	
g : 0.89	G : 0.07	a : 0.01	u : 0.01	

#score	1937.2727272727286
#seq	55
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_UTR_m2_run2.nuc.txt

#NT
UUUUCU	chr6:32943918-32944191(+)$1	273	100	106	18.0000
UUUUCU	chr11:10877651-10877915(-)$1	264	97	103	18.0000
UUUUCU	chr17:57915602-57915855(+)$1	253	2	8	18.0000
UUUUCU	chr6:33180132-33180394(+)$1	262	251	257	18.0000
UUUUCU	chr17:44159760-44160022(-)$1	262	92	98	18.0000
UUUUCU	chr2:198284929-198285150(-)$1	221	14	20	18.0000
UUUUCU	chrX:23802349-23802591(+)$1	242	34	40	18.0000
UUUUCU	chrX:23802292-23802521(+)$1	229	91	97	18.0000
UUUUCU	chr2:209169824-209170085(+)$1	261	107	113	18.0000
UUUUCU	chr17:30700310-30700570(+)$1	260	74	80	18.0000
UUUUCU	chr7:155573703-155573976(+)$1	273	228	234	18.0000
UUUUCU	chr9:96062221-96062475(+)$1	254	84	90	18.0000
UUUUCU	chr7:44839426-44839709(+)$1	283	122	128	18.0000
UUUUCU	chr4:184192116-184192372(+)$1	256	69	75	18.0000
UUUUCU	chr6:33163352-33163584(-)$1	232	26	32	18.0000
UUUUCU	chr19:19104342-19104593(-)$1	251	202	208	18.0000
uuuucu	chr11:62566376-62566634(-)$1	258	3	9	18.0000
UUUUCU	chrX:30715715-30715994(+)$1	279	72	78	18.0000
UUUUCU	chr7:26230625-26230850(-)$1	225	201	207	18.0000
UUUUCU	chr16:8728779-8729046(+)$1	267	59	65	18.0000
UUUUCU	chr14:24616253-24616507(-)$1	254	69	75	18.0000
UUUUCU	chr7:97498311-97498607(-)$1	296	102	108	18.0000
UUUUCU	chr2:198284817-198285037(-)$1	220	70	76	18.0000
UUUUCU	chr19:54972210-54972440(+)$1	230	197	203	18.0000
UUUUCU	chr4:119736126-119736422(-)$1	296	289	295	18.0000
UUUUCU	chr14:24616307-24616538(-)$1	231	100	106	18.0000
UUUUCU	chr10:5042487-5042741(-)$1	254	80	86	18.0000
UUUUCU	chr17:34161457-34161707(+)$1	250	91	97	18.0000
UUUUCU	chr19:54972704-54972961(+)$1	257	217	223	18.0000
UUUUCU	chr12:62954555-62954865(+)$1	310	118	124	18.0000
UUUUCU	chr2:209169464-209169754(+)$1	290	18	24	18.0000
UUUUCU	chr20:34214157-34214415(-)$1	258	100	106	18.0000
UUUUCU	chr1:151196607-151196861(+)$1	254	225	231	18.0000
UUUUCU	chr5:65454506-65454786(+)$1	280	98	104	18.0000
UUUUCU	chr14:39746029-39746286(+)$1	257	91	97	18.0000
UUUUCU	chr7:91874992-91875291(-)$1	299	288	294	18.0000
UUUUCU	chr17:73236351-73236603(-)$1	252	91	97	18.0000
UUUUCU	chr1:97278472-97278745(+)$1	273	87	93	18.0000
uuuucu	chr12:72004729-72004985(-)$1	256	61	67	18.0000
UUUUCU	chr10:79579058-79579328(-)$1	270	81	87	18.0000
UUUUCU	chr14:24035485-24035731(-)$1	246	61	67	18.0000
UUUUCU	chr17:62518780-62519055(+)$1	275	224	230	18.0000
UUUUCU	chr1:70696659-70696951(+)$1	292	179	185	18.0000
uuuucu	chr12:123779013-123779286(-)$1	273	46	52	18.0000

#otherMatches

#Struct PSSM
WWWWWW	chr13:20245258-20245530(+)$1	272	68	74	18.0000
::::::	chr6:32943918-32944191(+)$1	273	100	106	18.0000
GGGGGG	chr11:10877651-10877915(-)$1	264	97	103	18.0000
::::GG	chr17:57915602-57915855(+)$1	253	2	8	18.0000
::::::	chr6:33180132-33180394(+)$1	262	251	257	18.0000
IIIIII	chr17:44159760-44160022(-)$1	262	92	98	18.0000
NNFFFF	chr2:198284929-198285150(-)$1	221	14	20	18.0000
bppppp	chrX:23802349-23802591(+)$1	242	34	40	18.0000
bppppp	chrX:23802292-23802521(+)$1	229	91	97	18.0000
::::::	chr2:209169824-209170085(+)$1	261	107	113	18.0000
oodddd	chr17:30700310-30700570(+)$1	260	74	80	18.0000
c22hhh	chr7:155573703-155573976(+)$1	273	228	234	18.0000
^^^^^^	chr9:96062221-96062475(+)$1	254	84	90	18.0000
^^^^^^	chr7:44839426-44839709(+)$1	283	122	128	18.0000
eee22c	chr4:184192116-184192372(+)$1	256	69	75	18.0000
::::::	chr6:33163352-33163584(-)$1	232	26	32	18.0000
EE}FFF	chr19:19104342-19104593(-)$1	251	202	208	18.0000
::::::	chr11:62566376-62566634(-)$1	258	3	9	18.0000
7fffff	chrX:30715715-30715994(+)$1	279	72	78	18.0000
dd]ccc	chr7:26230625-26230850(-)$1	225	201	207	18.0000
qqqqqq	chr16:8728779-8729046(+)$1	267	59	65	18.0000
qccc22	chr14:24616253-24616507(-)$1	254	69	75	18.0000
eee[bb	chr7:97498311-97498607(-)$1	296	102	108	18.0000
===:::	chr2:198284817-198285037(-)$1	220	70	76	18.0000
::::::	chr19:54972210-54972440(+)$1	230	197	203	18.0000
GGGGG:	chr4:119736126-119736422(-)$1	296	289	295	18.0000
qccc22	chr14:24616307-24616538(-)$1	231	100	106	18.0000
GGGG:g	chr10:5042487-5042741(-)$1	254	80	86	18.0000
JJJJJJ	chr17:34161457-34161707(+)$1	250	91	97	18.0000
::::::	chr19:54972704-54972961(+)$1	257	217	223	18.0000
f99999	chr12:62954555-62954865(+)$1	310	118	124	18.0000
::::::	chr2:209169464-209169754(+)$1	290	18	24	18.0000
tttbb]	chr20:34214157-34214415(-)$1	258	100	106	18.0000
dd]ddd	chr1:151196607-151196861(+)$1	254	225	231	18.0000
::::gg	chr5:65454506-65454786(+)$1	280	98	104	18.0000
gggg::	chr14:39746029-39746286(+)$1	257	91	97	18.0000
======	chr7:91874992-91875291(-)$1	299	288	294	18.0000
yyyyyy	chr17:73236351-73236603(-)$1	252	91	97	18.0000
dddd22	chr1:97278472-97278745(+)$1	273	87	93	18.0000
^^^^^^	chr12:72004729-72004985(-)$1	256	61	67	18.0000
++++++	chr10:79579058-79579328(-)$1	270	81	87	18.0000
nnnnnc	chr14:24035485-24035731(-)$1	246	61	67	18.0000
EEEEEG	chr17:62518780-62519055(+)$1	275	224	230	18.0000
::::GG	chr1:70696659-70696951(+)$1	292	179	185	18.0000
::::::	chr12:123779013-123779286(-)$1	273	46	52	18.0000

#DB
......	chr13:20245258-20245530(+)$1	1	68	74	18.0000
......	chr6:32943918-32944191(+)$1	1	100	106	18.0000
))))))	chr11:10877651-10877915(-)$1	1	97	103	18.0000
....((	chr17:57915602-57915855(+)$1	1	2	8	18.0000
......	chr6:33180132-33180394(+)$1	1	251	257	18.0000
((((((	chr17:44159760-44160022(-)$1	1	92	98	18.0000
..((((	chr2:198284929-198285150(-)$1	1	14	20	18.0000
(.....	chrX:23802349-23802591(+)$1	1	34	40	18.0000
(.....	chrX:23802292-23802521(+)$1	1	91	97	18.0000
......	chr2:209169824-209170085(+)$1	1	107	113	18.0000
..))))	chr17:30700310-30700570(+)$1	1	74	80	18.0000
)..)))	chr7:155573703-155573976(+)$1	1	228	234	18.0000
......	chr9:96062221-96062475(+)$1	1	84	90	18.0000
......	chr7:44839426-44839709(+)$1	1	122	128	18.0000
)))..)	chr4:184192116-184192372(+)$1	1	69	75	18.0000
......	chr6:33163352-33163584(-)$1	1	26	32	18.0000
)).)))	chr19:19104342-19104593(-)$1	1	202	208	18.0000
......	chr11:62566376-62566634(-)$1	1	3	9	18.0000
.)))))	chrX:30715715-30715994(+)$1	1	72	78	18.0000
)).)))	chr7:26230625-26230850(-)$1	1	201	207	18.0000
......	chr16:8728779-8729046(+)$1	1	59	65	18.0000
.)))..	chr14:24616253-24616507(-)$1	1	69	75	18.0000
(((.((	chr7:97498311-97498607(-)$1	1	102	108	18.0000
)))...	chr2:198284817-198285037(-)$1	1	70	76	18.0000
......	chr19:54972210-54972440(+)$1	1	197	203	18.0000
))))).	chr4:119736126-119736422(-)$1	1	289	295	18.0000
.)))..	chr14:24616307-24616538(-)$1	1	100	106	18.0000
((((.(	chr10:5042487-5042741(-)$1	1	80	86	18.0000
((((((	chr17:34161457-34161707(+)$1	1	91	97	18.0000
......	chr19:54972704-54972961(+)$1	1	217	223	18.0000
).....	chr12:62954555-62954865(+)$1	1	118	124	18.0000
......	chr2:209169464-209169754(+)$1	1	18	24	18.0000
...)).	chr20:34214157-34214415(-)$1	1	100	106	18.0000
)).)))	chr1:151196607-151196861(+)$1	1	225	231	18.0000
....((	chr5:65454506-65454786(+)$1	1	98	104	18.0000
))))..	chr14:39746029-39746286(+)$1	1	91	97	18.0000
))))))	chr7:91874992-91875291(-)$1	1	288	294	18.0000
......	chr17:73236351-73236603(-)$1	1	91	97	18.0000
))))..	chr1:97278472-97278745(+)$1	1	87	93	18.0000
......	chr12:72004729-72004985(-)$1	1	61	67	18.0000
......	chr10:79579058-79579328(-)$1	1	81	87	18.0000
.....)	chr14:24035485-24035731(-)$1	1	61	67	18.0000
))))))	chr17:62518780-62519055(+)$1	1	224	230	18.0000
....))	chr1:70696659-70696951(+)$1	1	179	185	18.0000
......	chr12:123779013-123779286(-)$1	1	46	52	18.0000

#PSSM
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
C : 0.93	c : 0.06	
U : 0.93	u : 0.06	

#score	810.0000000000001
#seq	45
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_CDS_m2_run1.nuc.txt

#NT
CUGG	chr11:421054-421300(-)$1	246	133	137	11.9999
CUGG	chr3:184023453-184023717(+)$1	264	246	250	11.9999
CUGG	chr11:65319757-65319977(-)$1	220	7	11	11.9999
CUGG	chr14:32295732-32296038(+)$1	306	41	45	11.9999
CUGG	chr12:48383479-48383688(-)$1	209	37	41	11.9999
CUGG	chr19:35551156-35551399(+)$1	243	30	34	11.9999
CUGG	chr21:45223345-45223596(+)$1	251	17	21	11.9999
CUGG	chr2:113404796-113405045(+)$1	249	152	156	11.9999
CUGG	chr16:67862175-67862394(-)$1	219	44	48	11.9999
CUGG	chr4:73987351-73987577(-)$1	226	173	177	11.9999
CUGG	chr1:48704898-48705109(+)$1	211	56	60	11.9999
CUGG	chr19:12874270-12874510(-)$1	240	23	27	11.9999
CUGG	chr22:20127992-20128242(+)$1	250	14	18	11.9999
CUGG	chr1:110170942-110171211(+)$1	269	146	150	11.9999
CUGG	chr14:105924504-105924783(+)$1	279	191	195	11.9999
CUGG	chr14:78221232-78221531(-)$1	299	153	157	11.9999
CUGG	chr19:54966090-54966338(+)$1	248	45	49	11.9999
CUGG	chr11:830771-830978(+)$1	207	25	29	11.9999
CUGG	chr10:121337051-121337317(-)$1	266	153	157	11.9999
CUGG	chr21:34907428-34907667(-)$1	239	127	131	11.9999
CUGG	chr6:30887765-30887984(+)$1	219	14	18	11.9999
CUGG	chr1:33741919-33742188(+)$1	269	29	33	11.9999
CUGG	chr2:74005327-74005602(-)$1	275	134	138	11.9999
CUGG	chr1:45485606-45485877(-)$1	271	33	37	11.9999
CUGG	chr11:837842-838129(+)$1	287	23	27	11.9999
CUGG	chr11:62561628-62561871(-)$1	243	114	118	11.9999
CUGG	chr6:32088665-32088911(-)$1	246	31	35	11.9999
CUGG	chr21:46917414-46917664(+)$1	250	45	49	11.9999
CUGG	chr14:21679341-21679566(-)$1	225	101	105	11.9999
CUGG	chr19:10823530-10823733(+)$1	203	28	32	11.9999
CUGG	chr17:61883851-61884115(+)$1	264	19	23	11.9999
CUGG	chrX:122774295-122774575(-)$1	280	131	135	11.9999
CUGG	chr16:4487336-4487603(+)$1	267	11	15	11.9999
CUGG	chr7:75618385-75618637(-)$1	252	15	19	11.9999
CUGG	chr4:861044-861309(-)$1	265	36	40	11.9999
CUGG	chr2:42522186-42522409(+)$1	223	164	168	11.9999
CUGG	chr1:19420524-19420732(-)$1	208	132	136	11.9999
CUGG	chr8:48734153-48734388(-)$1	235	52	56	11.9999
CUGG	chrX:107802193-107802484(+)$1	291	143	147	11.9999
CUGG	chr1:978642-978934(+)$1	292	134	138	11.9999
CUGG	chr1:156536163-156536414(-)$1	251	76	80	11.9999
CUGG	chr1:9779934-9780177(+)$1	243	58	62	11.9999
CUGG	chrY:15024557-15024885(+)$1	328	134	138	11.9999
CUGG	chr6:31602485-31602743(+)$1	258	168	172	11.9999
CUGG	chr3:33450171-33450391(-)$1	220	192	196	11.9999
CUGG	chr9:6588329-6588542(-)$1	213	25	29	11.9999
CUGG	chr12:56744780-56744983(-)$1	203	74	78	11.9999
CUGG	chr6:30551923-30552170(+)$1	247	113	117	11.9999
CUGG	chr10:101577064-101577340(+)$1	276	29	33	11.9999
CUGG	chr11:70279106-70279416(+)$1	310	23	27	11.9999
CUGG	chr12:57905449-57905686(+)$1	237	31	35	11.9999
CUGG	chrX:53113889-53114149(+)$1	260	38	42	11.9999
CUGG	chr1:17928532-17928810(+)$1	278	41	45	11.9999
CUGG	chr22:20080249-20080511(+)$1	262	139	143	11.9999
CUGG	chr2:220080985-220081231(-)$1	246	4	8	11.9999
CUGG	chr16:67984168-67984407(-)$1	239	51	55	11.9999
CUGG	chr9:139700483-139700842(+)$1	359	7	11	11.9999
CUGG	chr20:42169298-42169598(+)$1	300	64	68	11.9999
CUGG	chr21:45744340-45744604(+)$1	264	117	121	11.9999
CUGG	chr7:73731840-73732096(+)$1	256	109	113	11.9999
CUGG	chr2:238494576-238494828(-)$1	252	94	98	11.9999
CUGG	chr17:73568997-73569225(+)$1	228	55	59	11.9999
CUGG	chr9:33467717-33467964(-)$1	247	146	150	11.9999
CUGG	chr2:86348500-86348724(+)$1	224	197	201	11.9999
CUGG	chr16:1816687-1816904(+)$1	217	63	67	11.9999
CUGG	chr17:44127772-44128055(-)$1	283	10	14	11.9999
CUGG	chr12:6857837-6858099(-)$1	262	16	20	11.9999
CUGG	chr12:114397026-114397287(-)$1	261	65	69	11.9999
CUGG	chr5:132096444-132096785(-)$1	341	10	14	11.9999
CUGG	chr6:144808725-144808933(+)$1	208	42	46	11.9999
cugg	chr17:26913341-26913609(-)$1	268	15	19	11.9999
CUGG	chr19:901876-902149(-)$1	273	164	168	11.9999
CUGG	chr20:33872105-33872338(-)$1	233	120	124	11.9999
CUGG	chr16:718115-718337(+)$1	222	111	115	11.9999
CUGG	chr21:47694998-47695208(-)$1	210	22	26	11.9999
CUGG	chr3:50608408-50608726(+)$1	318	29	33	11.9999
CUGG	chr12:121174700-121174967(+)$1	267	115	119	11.9999
CUGG	chr9:131095033-131095324(+)$1	291	41	45	11.9999
CUGG	chr2:234368879-234369091(+)$1	212	159	163	11.9999
CUGG	chr5:131066571-131066818(-)$1	247	142	146	11.9999
CUGG	chr2:74719425-74719670(+)$1	245	60	64	11.9999
CUGG	chr11:117214789-117215094(+)$1	305	154	158	11.9999
CUGG	chr7:47474779-47474999(-)$1	220	11	15	11.9999

#otherMatches

#Struct PSSM
d[bb	chr19:11347043-11347321(-)$1	278	77	81	11.9999
YYDD	chr11:421054-421300(-)$1	246	133	137	11.9999
333d	chr3:184023453-184023717(+)$1	264	246	250	11.9999
CCCC	chr11:65319757-65319977(-)$1	220	7	11	11.9999
C{CC	chr14:32295732-32296038(+)$1	306	41	45	11.9999
EE{F	chr12:48383479-48383688(-)$1	209	37	41	11.9999
dd22	chr19:35551156-35551399(+)$1	243	30	34	11.9999
IIII	chr21:45223345-45223596(+)$1	251	17	21	11.9999
:GGG	chr2:113404796-113405045(+)$1	249	152	156	11.9999
FFFF	chr16:67862175-67862394(-)$1	219	44	48	11.9999
)hhh	chr4:73987351-73987577(-)$1	226	173	177	11.9999
dddd	chr1:48704898-48705109(+)$1	211	56	60	11.9999
:iii	chr19:12874270-12874510(-)$1	240	23	27	11.9999
KKFF	chr22:20127992-20128242(+)$1	250	14	18	11.9999
}GGG	chr1:110170942-110171211(+)$1	269	146	150	11.9999
fff[	chr14:105924504-105924783(+)$1	279	191	195	11.9999
eeee	chr14:78221232-78221531(-)$1	299	153	157	11.9999
dJJJ	chr19:54966090-54966338(+)$1	248	45	49	11.9999
iiii	chr11:830771-830978(+)$1	207	25	29	11.9999
cc[b	chr10:121337051-121337317(-)$1	266	153	157	11.9999
pppc	chr21:34907428-34907667(-)$1	239	127	131	11.9999
GG{D	chr6:30887765-30887984(+)$1	219	14	18	11.9999
fff$	chr1:33741919-33742188(+)$1	269	29	33	11.9999
====	chr2:74005327-74005602(-)$1	275	134	138	11.9999
ddd4	chr1:45485606-45485877(-)$1	271	33	37	11.9999
ffff	chr11:837842-838129(+)$1	287	23	27	11.9999
eeee	chr11:62561628-62561871(-)$1	243	114	118	11.9999
LLEE	chr6:32088665-32088911(-)$1	246	31	35	11.9999
ccbb	chr21:46917414-46917664(+)$1	250	45	49	11.9999
ee##	chr14:21679341-21679566(-)$1	225	101	105	11.9999
EEEE	chr19:10823530-10823733(+)$1	203	28	32	11.9999
bb[b	chr17:61883851-61884115(+)$1	264	19	23	11.9999
33ee	chrX:122774295-122774575(-)$1	280	131	135	11.9999
::BB	chr16:4487336-4487603(+)$1	267	11	15	11.9999
F{EE	chr7:75618385-75618637(-)$1	252	15	19	11.9999
FFFF	chr4:861044-861309(-)$1	265	36	40	11.9999
ccc"	chr2:42522186-42522409(+)$1	223	164	168	11.9999
66ee	chr1:19420524-19420732(-)$1	208	132	136	11.9999
mbb2	chr8:48734153-48734388(-)$1	235	52	56	11.9999
eeee	chrX:107802193-107802484(+)$1	291	143	147	11.9999
eeee	chr1:978642-978934(+)$1	292	134	138	11.9999
b[bb	chr1:156536163-156536414(-)$1	251	76	80	11.9999
IIII	chr1:9779934-9780177(+)$1	243	58	62	11.9999
:::G	chrY:15024557-15024885(+)$1	328	134	138	11.9999
b[bb	chr6:31602485-31602743(+)$1	258	168	172	11.9999
iiii	chr3:33450171-33450391(-)$1	220	192	196	11.9999
GGGG	chr9:6588329-6588542(-)$1	213	25	29	11.9999
^^dd	chr12:56744780-56744983(-)$1	203	74	78	11.9999
===r	chr6:30551923-30552170(+)$1	247	113	117	11.9999
CCLL	chr10:101577064-101577340(+)$1	276	29	33	11.9999
J:::	chr11:70279106-70279416(+)$1	310	23	27	11.9999
nnnd	chr12:57905449-57905686(+)$1	237	31	35	11.9999
eee[	chrX:53113889-53114149(+)$1	260	38	42	11.9999
eeee	chr1:17928532-17928810(+)$1	278	41	45	11.9999
cccc	chr22:20080249-20080511(+)$1	262	139	143	11.9999
:DDD	chr2:220080985-220081231(-)$1	246	4	8	11.9999
oooc	chr16:67984168-67984407(-)$1	239	51	55	11.9999
IIII	chr9:139700483-139700842(+)$1	359	7	11	11.9999
DDD{	chr20:42169298-42169598(+)$1	300	64	68	11.9999
mmff	chr21:45744340-45744604(+)$1	264	117	121	11.9999
lldd	chr7:73731840-73732096(+)$1	256	109	113	11.9999
hhhh	chr2:238494576-238494828(-)$1	252	94	98	11.9999
ccc]	chr17:73568997-73569225(+)$1	228	55	59	11.9999
eedd	chr9:33467717-33467964(-)$1	247	146	150	11.9999
dddd	chr2:86348500-86348724(+)$1	224	197	201	11.9999
b]bb	chr16:1816687-1816904(+)$1	217	63	67	11.9999
{FFF	chr17:44127772-44128055(-)$1	283	10	14	11.9999
%%cc	chr12:6857837-6858099(-)$1	262	16	20	11.9999
hhhh	chr12:114397026-114397287(-)$1	261	65	69	11.9999
EEEE	chr5:132096444-132096785(-)$1	341	10	14	11.9999
lllc	chr6:144808725-144808933(+)$1	208	42	46	11.9999
E::b	chr17:26913341-26913609(-)$1	268	15	19	11.9999
GGGG	chr19:901876-902149(-)$1	273	164	168	11.9999
]ddd	chr20:33872105-33872338(-)$1	233	120	124	11.9999
mmmc	chr16:718115-718337(+)$1	222	111	115	11.9999
nnbb	chr21:47694998-47695208(-)$1	210	22	26	11.9999
eeee	chr3:50608408-50608726(+)$1	318	29	33	11.9999
lldd	chr12:121174700-121174967(+)$1	267	115	119	11.9999
DDDD	chr9:131095033-131095324(+)$1	291	41	45	11.9999
[eee	chr2:234368879-234369091(+)$1	212	159	163	11.9999
%%ff	chr5:131066571-131066818(-)$1	247	142	146	11.9999
gggg	chr2:74719425-74719670(+)$1	245	60	64	11.9999
dddd	chr11:117214789-117215094(+)$1	305	154	158	11.9999
ccoo	chr7:47474779-47474999(-)$1	220	11	15	11.9999

#DB
(.((	chr19:11347043-11347321(-)$1	1	77	81	11.9999
..))	chr11:421054-421300(-)$1	1	133	137	11.9999
...)	chr3:184023453-184023717(+)$1	1	246	250	11.9999
((((	chr11:65319757-65319977(-)$1	1	7	11	11.9999
(.((	chr14:32295732-32296038(+)$1	1	41	45	11.9999
((.(	chr12:48383479-48383688(-)$1	1	37	41	11.9999
))..	chr19:35551156-35551399(+)$1	1	30	34	11.9999
((((	chr21:45223345-45223596(+)$1	1	17	21	11.9999
.)))	chr2:113404796-113405045(+)$1	1	152	156	11.9999
((((	chr16:67862175-67862394(-)$1	1	44	48	11.9999
.(((	chr4:73987351-73987577(-)$1	1	173	177	11.9999
))))	chr1:48704898-48705109(+)$1	1	56	60	11.9999
.(((	chr19:12874270-12874510(-)$1	1	23	27	11.9999
..((	chr22:20127992-20128242(+)$1	1	14	18	11.9999
.)))	chr1:110170942-110171211(+)$1	1	146	150	11.9999
(((.	chr14:105924504-105924783(+)$1	1	191	195	11.9999
((((	chr14:78221232-78221531(-)$1	1	153	157	11.9999
)(((	chr19:54966090-54966338(+)$1	1	45	49	11.9999
))))	chr11:830771-830978(+)$1	1	25	29	11.9999
((.(	chr10:121337051-121337317(-)$1	1	153	157	11.9999
...)	chr21:34907428-34907667(-)$1	1	127	131	11.9999
((.(	chr6:30887765-30887984(+)$1	1	14	18	11.9999
(((.	chr1:33741919-33742188(+)$1	1	29	33	11.9999
((((	chr2:74005327-74005602(-)$1	1	134	138	11.9999
))).	chr1:45485606-45485877(-)$1	1	33	37	11.9999
))))	chr11:837842-838129(+)$1	1	23	27	11.9999
((((	chr11:62561628-62561871(-)$1	1	114	118	11.9999
..((	chr6:32088665-32088911(-)$1	1	31	35	11.9999
((((	chr21:46917414-46917664(+)$1	1	45	49	11.9999
((..	chr14:21679341-21679566(-)$1	1	101	105	11.9999
((((	chr19:10823530-10823733(+)$1	1	28	32	11.9999
((.(	chr17:61883851-61884115(+)$1	1	19	23	11.9999
..))	chrX:122774295-122774575(-)$1	1	131	135	11.9999
..((	chr16:4487336-4487603(+)$1	1	11	15	11.9999
(.((	chr7:75618385-75618637(-)$1	1	15	19	11.9999
((((	chr4:861044-861309(-)$1	1	36	40	11.9999
(((.	chr2:42522186-42522409(+)$1	1	164	168	11.9999
..))	chr1:19420524-19420732(-)$1	1	132	136	11.9999
.)).	chr8:48734153-48734388(-)$1	1	52	56	11.9999
))))	chrX:107802193-107802484(+)$1	1	143	147	11.9999
((((	chr1:978642-978934(+)$1	1	134	138	11.9999
(.((	chr1:156536163-156536414(-)$1	1	76	80	11.9999
((((	chr1:9779934-9780177(+)$1	1	58	62	11.9999
...)	chrY:15024557-15024885(+)$1	1	134	138	11.9999
(.((	chr6:31602485-31602743(+)$1	1	168	172	11.9999
))))	chr3:33450171-33450391(-)$1	1	192	196	11.9999
((((	chr9:6588329-6588542(-)$1	1	25	29	11.9999
..))	chr12:56744780-56744983(-)$1	1	74	78	11.9999
(((.	chr6:30551923-30552170(+)$1	1	113	117	11.9999
((..	chr10:101577064-101577340(+)$1	1	29	33	11.9999
(...	chr11:70279106-70279416(+)$1	1	23	27	11.9999
...)	chr12:57905449-57905686(+)$1	1	31	35	11.9999
(((.	chrX:53113889-53114149(+)$1	1	38	42	11.9999
))))	chr1:17928532-17928810(+)$1	1	41	45	11.9999
))))	chr22:20080249-20080511(+)$1	1	139	143	11.9999
.(((	chr2:220080985-220081231(-)$1	1	4	8	11.9999
...)	chr16:67984168-67984407(-)$1	1	51	55	11.9999
((((	chr9:139700483-139700842(+)$1	1	7	11	11.9999
(((.	chr20:42169298-42169598(+)$1	1	64	68	11.9999
..))	chr21:45744340-45744604(+)$1	1	117	121	11.9999
..))	chr7:73731840-73732096(+)$1	1	109	113	11.9999
((((	chr2:238494576-238494828(-)$1	1	94	98	11.9999
))).	chr17:73568997-73569225(+)$1	1	55	59	11.9999
((((	chr9:33467717-33467964(-)$1	1	146	150	11.9999
((((	chr2:86348500-86348724(+)$1	1	197	201	11.9999
).))	chr16:1816687-1816904(+)$1	1	63	67	11.9999
.(((	chr17:44127772-44128055(-)$1	1	10	14	11.9999
..((	chr12:6857837-6858099(-)$1	1	16	20	11.9999
((((	chr12:114397026-114397287(-)$1	1	65	69	11.9999
((((	chr5:132096444-132096785(-)$1	1	10	14	11.9999
...)	chr6:144808725-144808933(+)$1	1	42	46	11.9999
(..(	chr17:26913341-26913609(-)$1	1	15	19	11.9999
))))	chr19:901876-902149(-)$1	1	164	168	11.9999
.)))	chr20:33872105-33872338(-)$1	1	120	124	11.9999
...)	chr16:718115-718337(+)$1	1	111	115	11.9999
..))	chr21:47694998-47695208(-)$1	1	22	26	11.9999
((((	chr3:50608408-50608726(+)$1	1	29	33	11.9999
..))	chr12:121174700-121174967(+)$1	1	115	119	11.9999
((((	chr9:131095033-131095324(+)$1	1	41	45	11.9999
.(((	chr2:234368879-234369091(+)$1	1	159	163	11.9999
..((	chr5:131066571-131066818(-)$1	1	142	146	11.9999
))))	chr2:74719425-74719670(+)$1	1	60	64	11.9999
))))	chr11:117214789-117215094(+)$1	1	154	158	11.9999
((..	chr7:47474779-47474999(-)$1	1	11	15	11.9999

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	

#score	1007.9999999999995
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_transcript_m2_run1.nuc.txt

#NT
AUUCUUUUCU	chr2:74441938-74442221(+)$1	283	132	142	15.9375
AUUAUUUUUA	chr17:53470262-53470525(-)$1	263	9	19	14.8437
AUUUAUUUGU	chr17:77807098-77807334(-)$1	236	3	13	15.3906
ACUUUUUUUU	chr14:23495061-23495278(-)$1	217	94	104	15.6250
AUUUUAUUUU	chr12:46758070-46758282(-)$1	212	91	101	15.9375
AUCUUUUUCU	chr12:69746910-69747124(+)$1	214	8	18	15.6250
AUUUUUUUUU	chr19:54379519-54379745(+)$1	226	37	47	20.0781
cuuuuuuucu	chr1:154322462-154322710(+)$1	248	84	94	16.0156
AUUUUUUAUC	chr15:57384046-57384337(+)$1	291	97	107	13.9062
auuuuuuuua	chr16:87866124-87866339(-)$1	215	50	60	19.1406
AUUUUUCUCA	chr14:31647051-31647317(-)$1	266	120	130	14.9218
AUUUAUUUCU	chr6:163994248-163994490(+)$1	242	39	49	15.9375
AUUUUUUCCU	chr2:216257833-216258062(-)$1	229	68	78	15.6250
AUUUUGUUAA	chr9:96941531-96941816(+)$1	285	260	270	14.4531
AUUUUUUUAU	chr20:34326907-34327120(-)$1	213	32	42	19.5312
AUUUGUUUCU	chr15:81270567-81270842(-)$1	275	78	88	15.7031
GUUUUUUUCC	chr11:65194397-65194643(+)$1	246	89	99	14.2187
AUUCUUUUGA	chr3:186335070-186335353(+)$1	283	81	91	14.4531
AUUUUAUUGU	chr16:19132576-19132799(+)$1	223	66	76	15.4687
AUUUUUUUCU	chrX:132669918-132670156(-)$1	238	78	88	20.1562
AUUUUUUUGU	chr1:150237737-150237962(-)$1	225	19	29	19.6093
AUUUUUUUUA	chr2:242276811-242277094(+)$1	283	236	246	19.1406
AUUUUUCUCA	chr8:22279086-22279315(+)$1	229	35	45	14.9218
AUUUUGUUCC	chr5:114950464-114950723(-)$1	259	13	23	14.2968
CUUUUUUUUG	chr2:102510959-102511193(+)$1	234	97	107	13.9062
AUUCUUUUAU	chr17:56168128-56168397(+)$1	269	90	100	15.3125
AUUUUUUUUC	chrX:131505966-131506246(-)$1	280	92	102	18.3593
AUAUUUUUUA	chr5:42800482-42800735(-)$1	253	93	103	14.6093
AUUUUUCUUA	chr9:123943026-123943292(-)$1	266	133	143	14.8437
AUGUUUUUGU	chr9:96441368-96441619(+)$1	251	99	109	15.2343
AUUUUGUUUU	chr22:38202300-38202503(+)$1	203	60	70	15.9375
auuauuuuuu	chr3:145787441-145787673(-)$1	232	49	59	15.7812
AUUUUCUUCC	chr14:39651742-39652031(+)$1	289	11	21	14.2187
AUUUUUUGCU	chr12:46757419-46757648(-)$1	229	78	88	15.7031
AUUUUUGUAC	chr4:155491776-155492032(+)$1	256	66	76	13.4375
acuuuuuuuu	chr19:18390664-18390915(-)$1	251	36	46	15.6250
AUGuuuuuau	chr19:43011398-43011643(-)$1	245	150	160	15.1562
AUUUCUUUGU	chr7:94298369-94298615(+)$1	246	59	69	15.1562
AGUUUUUUCC	chr1:230838200-230838443(-)$1	243	32	42	14.0625
CUUUUUUUGG	chr14:62213727-62213974(+)$1	247	96	106	13.4375
AUGUUUUUGA	chr3:127788578-127788819(+)$1	241	26	36	14.2968
AUUUAUUUGU	chr2:191761477-191761749(+)$1	272	86	96	15.3906
AUUUUUUUCC	chr16:31199393-31199638(+)$1	245	158	168	18.4375
AGUUUUUUCA	chr6:132269321-132269529(-)$1	208	78	88	14.8437
CUUUUUUUAA	chr11:65272419-65272697(+)$1	278	218	228	14.4531
AUUUUUUUGG	chr2:216285644-216285863(-)$1	219	146	156	17.5781
AUUUUUUUUA	chr1:70694151-70694413(+)$1	262	236	246	19.1406
auuuuuuaaa	chr3:145787362-145787623(-)$1	261	2	12	14.1406
auuuuuuuuu	chr4:166263425-166263684(+)$1	259	92	102	20.0781
AUUGUUUUCA	chr8:22879710-22879963(-)$1	253	54	64	14.9218
GUUUUUUUGU	chr5:32355239-32355508(-)$1	269	117	127	15.3906
AUUUUUAUCA	chr10:5149687-5149951(+)$1	264	170	180	14.7656
AUUUUUUUAA	chr8:71486890-71487162(-)$1	272	128	138	18.5937
auuuuuuuaa	chr15:99502341-99502587(+)$1	246	92	102	18.5937
AUUGUUUUCU	chr2:216295253-216295506(-)$1	253	107	117	15.8593
AUUUUCUUUG	chr6:142766888-142767175(+)$1	287	187	197	13.8281
auuuuauuuu	chr21:45878524-45878796(+)$1	272	60	70	15.9375
AGUUUUUUCC	chr3:171965477-171965732(+)$1	255	41	51	14.0625
GUUUUUUUGU	chr7:94297214-94297463(+)$1	249	78	88	15.3906
auuuuuugag	chr11:118471691-118471948(+)$1	257	97	107	13.0468
AUUUUUGUGU	chr6:158932101-158932314(+)$1	213	54	64	15.2343
auuuauuuau	chr6:37142683-37142936(+)$1	253	85	95	15.3125
auuuuuuuaa	chr17:66527880-66528117(+)$1	237	81	91	18.5937

#otherMatches

#Struct PSSM
IIIIIIII::	chr15:99506355-99506607(+)$1	252	86	96	20.0781
::::::::::	chr2:74441938-74442221(+)$1	283	132	142	15.9375
GGPPPPPPPF	chr17:53470262-53470525(-)$1	263	9	19	14.8437
:::::::::e	chr17:77807098-77807334(-)$1	236	3	13	15.3906
$$$$$bb[dd	chr14:23495061-23495278(-)$1	217	94	104	15.6250
^^^iiiiiii	chr12:46758070-46758282(-)$1	212	91	101	15.9375
KKEEEEE:::	chr12:69746910-69747124(+)$1	214	8	18	15.6250
::::::::::	chr19:54379519-54379745(+)$1	226	37	47	20.0781
::::::::::	chr1:154322462-154322710(+)$1	248	84	94	16.0156
vvvvvvvvvv	chr15:57384046-57384337(+)$1	291	97	107	13.9062
^^^^^^^^ee	chr16:87866124-87866339(-)$1	215	50	60	19.1406
::::GGGGGG	chr14:31647051-31647317(-)$1	266	120	130	14.9218
:::::::::c	chr6:163994248-163994490(+)$1	242	39	49	15.9375
^^^^^^^^^^	chr2:216257833-216258062(-)$1	229	68	78	15.6250
YJJJJJJJJJ	chr9:96941531-96941816(+)$1	285	260	270	14.4531
dddd[ggggg	chr20:34326907-34327120(-)$1	213	32	42	19.5312
eeeee22ccc	chr15:81270567-81270842(-)$1	275	78	88	15.7031
wwwwwwccc2	chr11:65194397-65194643(+)$1	246	89	99	14.2187
ppeeeeea]=	chr3:186335070-186335353(+)$1	283	81	91	14.4531
c22dddd::h	chr16:19132576-19132799(+)$1	223	66	76	15.4687
::::::::::	chrX:132669918-132670156(-)$1	238	78	88	20.1562
CUUUUUUUUU	chr1:150237737-150237962(-)$1	225	19	29	19.6093
3=========	chr2:242276811-242277094(+)$1	283	236	246	19.1406
++++++++++	chr8:22279086-22279315(+)$1	229	35	45	14.9218
:HHHHHHHH:	chr5:114950464-114950723(-)$1	259	13	23	14.2968
"eeeee!!ff	chr2:102510959-102511193(+)$1	234	97	107	13.9062
==========	chr17:56168128-56168397(+)$1	269	90	100	15.3125
ffffoooooo	chrX:131505966-131506246(-)$1	280	92	102	18.3593
b333======	chr5:42800482-42800735(-)$1	253	93	103	14.6093
d!!ddddnnn	chr9:123943026-123943292(-)$1	266	133	143	14.8437
fffmmmmfff	chr9:96441368-96441619(+)$1	251	99	109	15.2343
ggggg:::::	chr22:38202300-38202503(+)$1	203	60	70	15.9375
EEE::::ggg	chr3:145787441-145787673(-)$1	232	49	59	15.7812
IIIIIIIII:	chr14:39651742-39652031(+)$1	289	11	21	14.2187
pppeeeee]g	chr12:46757419-46757648(-)$1	229	78	88	15.7031
%bb!!dddd!	chr4:155491776-155492032(+)$1	256	66	76	13.4375
::::======	chr19:18390664-18390915(-)$1	251	36	46	15.6250
qqhhhhhhhh	chr19:43011398-43011643(-)$1	245	150	160	15.1562
xxxxxxxxgg	chr7:94298369-94298615(+)$1	246	59	69	15.1562
::::::::::	chr1:230838200-230838443(-)$1	243	32	42	14.0625
cpppppppcc	chr14:62213727-62213974(+)$1	247	96	106	13.4375
ssdddd::hh	chr3:127788578-127788819(+)$1	241	26	36	14.2968
^^^^^ccc]g	chr2:191761477-191761749(+)$1	272	86	96	15.3906
vvvvvvvvbb	chr16:31199393-31199638(+)$1	245	158	168	18.4375
iiiiiii666	chr6:132269321-132269529(-)$1	208	78	88	14.8437
dd]dddd444	chr11:65272419-65272697(+)$1	278	218	228	14.4531
ggggggnnnn	chr2:216285644-216285863(-)$1	219	146	156	17.5781
cnnnnnccc5	chr1:70694151-70694413(+)$1	262	236	246	19.1406
:::::::::E	chr3:145787362-145787623(-)$1	261	2	12	14.1406
::::::::::	chr4:166263425-166263684(+)$1	259	92	102	20.0781
c22bb333dd	chr8:22879710-22879963(-)$1	253	54	64	14.9218
eeeppppppp	chr5:32355239-32355508(-)$1	269	117	127	15.3906
::eeeeeooo	chr10:5149687-5149951(+)$1	264	170	180	14.7656
c55555====	chr8:71486890-71487162(-)$1	272	128	138	18.5937
::::::::::	chr15:99502341-99502587(+)$1	246	92	102	18.5937
DD{BBggggg	chr2:216295253-216295506(-)$1	253	107	117	15.8593
d:::ccc[dd	chr6:142766888-142767175(+)$1	287	187	197	13.8281
yyyyyyyyyy	chr21:45878524-45878796(+)$1	272	60	70	15.9375
::::::::::	chr3:171965477-171965732(+)$1	255	41	51	14.0625
BBKKDDDD{B	chr7:94297214-94297463(+)$1	249	78	88	15.3906
:::::eeeee	chr11:118471691-118471948(+)$1	257	97	107	13.0468
d!!ccc!!a[	chr6:158932101-158932314(+)$1	213	54	64	15.2343
::::::::::	chr6:37142683-37142936(+)$1	253	85	95	15.3125
cc++++++++	chr17:66527880-66528117(+)$1	237	81	91	18.5937

#DB
((((((((..	chr15:99506355-99506607(+)$1	1	86	96	20.0781
..........	chr2:74441938-74442221(+)$1	1	132	142	15.9375
((.......(	chr17:53470262-53470525(-)$1	1	9	19	14.8437
.........(	chr17:77807098-77807334(-)$1	1	3	13	15.3906
.....((.((	chr14:23495061-23495278(-)$1	1	94	104	15.6250
...)))))))	chr12:46758070-46758282(-)$1	1	91	101	15.9375
..(((((...	chr12:69746910-69747124(+)$1	1	8	18	15.6250
..........	chr19:54379519-54379745(+)$1	1	37	47	20.0781
..........	chr1:154322462-154322710(+)$1	1	84	94	16.0156
..........	chr15:57384046-57384337(+)$1	1	97	107	13.9062
........))	chr16:87866124-87866339(-)$1	1	50	60	19.1406
....((((((	chr14:31647051-31647317(-)$1	1	120	130	14.9218
.........(	chr6:163994248-163994490(+)$1	1	39	49	15.9375
..........	chr2:216257833-216258062(-)$1	1	68	78	15.6250
.)))))))))	chr9:96941531-96941816(+)$1	1	260	270	14.4531
((((.(((((	chr20:34326907-34327120(-)$1	1	32	42	19.5312
)))))..)))	chr15:81270567-81270842(-)$1	1	78	88	15.7031
......))).	chr11:65194397-65194643(+)$1	1	89	99	14.2187
..)))))).)	chr3:186335070-186335353(+)$1	1	81	91	14.4531
)..))))..(	chr16:19132576-19132799(+)$1	1	66	76	15.4687
..........	chrX:132669918-132670156(-)$1	1	78	88	20.1562
(.........	chr1:150237737-150237962(-)$1	1	19	29	19.6093
.)))))))))	chr2:242276811-242277094(+)$1	1	236	246	19.1406
..........	chr8:22279086-22279315(+)$1	1	35	45	14.9218
.((((((((.	chr5:114950464-114950723(-)$1	1	13	23	14.2968
.(((((..((	chr2:102510959-102511193(+)$1	1	97	107	13.9062
))))))))))	chr17:56168128-56168397(+)$1	1	90	100	15.3125
((((......	chrX:131505966-131506246(-)$1	1	92	102	18.3593
)...))))))	chr5:42800482-42800735(-)$1	1	93	103	14.6093
(..((((...	chr9:123943026-123943292(-)$1	1	133	143	14.8437
(((....)))	chr9:96441368-96441619(+)$1	1	99	109	15.2343
))))).....	chr22:38202300-38202503(+)$1	1	60	70	15.9375
(((....(((	chr3:145787441-145787673(-)$1	1	49	59	15.7812
(((((((((.	chr14:39651742-39652031(+)$1	1	11	21	14.2187
...))))).)	chr12:46757419-46757648(-)$1	1	78	88	15.7031
.((..((((.	chr4:155491776-155492032(+)$1	1	66	76	13.4375
....((((((	chr19:18390664-18390915(-)$1	1	36	46	15.6250
..))))))))	chr19:43011398-43011643(-)$1	1	150	160	15.1562
........))	chr7:94298369-94298615(+)$1	1	59	69	15.1562
..........	chr1:230838200-230838443(-)$1	1	32	42	14.0625
(.......))	chr14:62213727-62213974(+)$1	1	96	106	13.4375
..))))..((	chr3:127788578-127788819(+)$1	1	26	36	14.2968
.....))).)	chr2:191761477-191761749(+)$1	1	86	96	15.3906
........))	chr16:31199393-31199638(+)$1	1	158	168	18.4375
)))))))...	chr6:132269321-132269529(-)$1	1	78	88	14.8437
)).))))...	chr11:65272419-65272697(+)$1	1	218	228	14.4531
((((((....	chr2:216285644-216285863(-)$1	1	146	156	17.5781
(.....))).	chr1:70694151-70694413(+)$1	1	236	246	19.1406
.........(	chr3:145787362-145787623(-)$1	1	2	12	14.1406
..........	chr4:166263425-166263684(+)$1	1	92	102	20.0781
)..))...))	chr8:22879710-22879963(-)$1	1	54	64	14.9218
(((.......	chr5:32355239-32355508(-)$1	1	117	127	15.3906
..(((((...	chr10:5149687-5149951(+)$1	1	170	180	14.7656
).....))))	chr8:71486890-71487162(-)$1	1	128	138	18.5937
..........	chr15:99502341-99502587(+)$1	1	92	102	18.5937
((.(((((((	chr2:216295253-216295506(-)$1	1	107	117	15.8593
)...(((.((	chr6:142766888-142767175(+)$1	1	187	197	13.8281
..........	chr21:45878524-45878796(+)$1	1	60	70	15.9375
..........	chr3:171965477-171965732(+)$1	1	41	51	14.0625
((..((((.(	chr7:94297214-94297463(+)$1	1	78	88	15.3906
.....(((((	chr11:118471691-118471948(+)$1	1	97	107	13.0468
(..(((..(.	chr6:158932101-158932314(+)$1	1	54	64	15.2343
..........	chr6:37142683-37142936(+)$1	1	85	95	15.3125
((........	chr17:66527880-66528117(+)$1	1	81	91	18.5937

#PSSM
A : 0.73	a : 0.15	G : 0.04	C : 0.04	c : 0.01	
U : 0.76	u : 0.15	G : 0.04	C : 0.01	c : 0.01	
U : 0.75	u : 0.17	G : 0.04	C : 0.01	A : 0.01	
U : 0.71	u : 0.17	C : 0.04	G : 0.03	A : 0.01	a : 0.01	
U : 0.73	u : 0.17	A : 0.04	G : 0.01	C : 0.01	a : 0.01	
U : 0.70	u : 0.17	G : 0.04	A : 0.03	C : 0.03	a : 0.01	
U : 0.71	u : 0.18	C : 0.04	G : 0.03	A : 0.01	
U : 0.76	u : 0.15	A : 0.01	C : 0.01	G : 0.01	a : 0.01	g : 0.01	
C : 0.29	U : 0.21	G : 0.20	A : 0.09	a : 0.09	u : 0.07	c : 0.01	
U : 0.37	A : 0.23	C : 0.14	u : 0.10	a : 0.06	G : 0.06	g : 0.01	

#score	1019.6875
#seq	64
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_UTR_m1_run2.nuc.txt

#NT
AAGAAGA	chr15:78841058-78841367(+)$1	309	166	173	17.8644
aagaaga	chr14:102550988-102551198(-)$1	210	19	26	17.8644
AAGAAGA	chr12:76442879-76443084(-)$1	205	61	68	17.8644
GAGAAGA	chrX:53611071-53611333(-)$1	262	127	134	14.6440
CAGAAGA	chr9:36211598-36211881(+)$1	283	6	13	13.9661
GAGAAGA	chr17:7480827-7481123(+)$1	296	158	165	14.6440
AGGAAGA	chr22:41225552-41225778(-)$1	226	101	108	13.7118
AAGGAGA	chr17:73315174-73315431(-)$1	257	145	152	13.5423
AAGAAGU	chr7:99697580-99697788(-)$1	208	80	87	14.1355
AAGAAGC	chr19:50002675-50002880(+)$1	205	193	200	14.0508
GAGAAGA	chr12:56189713-56189919(-)$1	206	66	73	14.6440
GAGAAGA	chr19:10505951-10506208(-)$1	257	10	17	14.6440
AAGAAGC	chr8:48889257-48889514(+)$1	257	10	17	14.0508
AUGAAGA	chr5:96369189-96369426(+)$1	237	140	147	14.0508
aagaaga	chr8:124381959-124382187(-)$1	228	43	50	17.8644
GAGAAGA	chr12:56189707-56189913(-)$1	206	60	67	14.6440
AAGAAGA	chr20:32441233-32441541(+)$1	308	70	77	17.8644
AAGAAGG	chr1:145456496-145456823(-)$1	327	186	193	14.4745
AAGGAGA	chr16:88851443-88851673(-)$1	230	163	170	13.5423
AAGAAGG	chr11:129997598-129997835(+)$1	237	65	72	14.4745
AAGAAGA	chr22:20106561-20106773(+)$1	212	83	90	17.8644
AAGAAGU	chr5:65474579-65474851(+)$1	272	7	14	14.1355
AAGAAGU	chr11:763699-763959(+)$1	260	82	89	14.1355
AGGAAGA	chr5:891278-891505(-)$1	227	101	108	13.7118
aagaagg	chr19:17420262-17420547(+)$1	285	131	138	14.4745
AAGAAGG	chr5:137522684-137522928(+)$1	244	157	164	14.4745
AUGAAGA	chr11:77333599-77333819(-)$1	220	137	144	14.0508
AAGGAGA	chr7:102065461-102065743(+)$1	282	213	220	13.5423
AUGAAGA	chr6:163955915-163956155(+)$1	240	138	145	14.0508
GAGAAGA	chr16:87425893-87426149(+)$1	256	149	156	14.6440
aagaaga	chr22:30738161-30738438(-)$1	277	151	158	17.8644
AAGAAGA	chr15:69072230-69072511(-)$1	281	30	37	17.8644
AAGAAGA	chr15:40330381-40330614(-)$1	233	111	118	17.8644
AAGUAGA	chr15:44093806-44094116(+)$1	310	283	290	13.3728
UAGAAGA	chr1:43629926-43630264(-)$1	338	97	104	14.0508
UAGAAGA	chr5:10255965-10256187(+)$1	222	119	126	14.0508
AAGAAGG	chr19:39923803-39924054(-)$1	251	13	20	14.4745
GAGAAGA	chr14:24686130-24686426(-)$1	296	4	11	14.6440
AAGAAGA	chr19:13888857-13889126(+)$1	269	29	36	17.8644
AAGCAGA	chr10:79799863-79800083(+)$1	220	190	197	13.3728
AAGAAGA	chr18:43667974-43668249(-)$1	275	90	97	17.8644
AAGAAGA	chr19:15510055-15510319(-)$1	264	154	161	17.8644
AUGAAGA	chr2:47388760-47389021(-)$1	261	94	101	14.0508
GAGAAGA	chr22:30972713-30973180(-)$1	467	115	122	14.6440
AAGAAGA	chr17:7145536-7145846(-)$1	310	213	220	17.8644
AAGAAGA	chr1:70716348-70716637(+)$1	289	0	7	17.8644
aagaaga	chr14:102551033-102551242(-)$1	209	40	47	17.8644
AAGAAGA	chr6:26199147-26199389(-)$1	242	140	147	17.8644
AUGAAGA	chr2:101622375-101622634(+)$1	259	95	102	14.0508
AAGAAGG	chr17:79804204-79804486(-)$1	282	47	54	14.4745
aagaaga	chr1:153634768-153635025(-)$1	257	86	93	17.8644
GAGAAGA	chr17:73034917-73035259(-)$1	342	104	111	14.6440
AAGAAGG	chr14:24680785-24681048(-)$1	263	15	22	14.4745
aagaaga	chr16:89348460-89348702(-)$1	242	127	134	17.8644
AAGAAGA	chr1:29475062-29475332(-)$1	270	99	106	17.8644
AAGAAGA	chr17:28506114-28506413(+)$1	299	162	169	17.8644
AAGAAGA	chr1:150198849-150199061(-)$1	212	108	115	17.8644
AUGAAGA	chr7:140404564-140404860(+)$1	296	132	139	14.0508

#otherMatches

#Struct PSSM
ddd22ee	chr5:149779272-149779520(+)$1	248	202	209	17.8644
}BB~~~~	chr15:78841058-78841367(+)$1	309	166	173	17.8644
^^^^^^^	chr14:102550988-102551198(-)$1	210	19	26	17.8644
EEEEMMM	chr12:76442879-76443084(-)$1	205	61	68	17.8644
CCC}EEE	chrX:53611071-53611333(-)$1	262	127	134	14.6440
B:ddddm	chr9:36211598-36211881(+)$1	283	6	13	13.9661
ccc::ff	chr17:7480827-7481123(+)$1	296	158	165	14.6440
=======	chr22:41225552-41225778(-)$1	226	101	108	13.7118
7iiiiii	chr17:73315174-73315431(-)$1	257	145	152	13.5423
:dddd[d	chr7:99697580-99697788(-)$1	208	80	87	14.1355
::DDDDY	chr19:50002675-50002880(+)$1	205	193	200	14.0508
=======	chr12:56189713-56189919(-)$1	206	66	73	14.6440
{BBKKDD	chr19:10505951-10506208(-)$1	257	10	17	14.6440
mmmeeee	chr8:48889257-48889514(+)$1	257	10	17	14.0508
444ffff	chr5:96369189-96369426(+)$1	237	140	147	14.0508
EEEEEJJ	chr8:124381959-124382187(-)$1	228	43	50	17.8644
=======	chr12:56189707-56189913(-)$1	206	60	67	14.6440
sseeeee	chr20:32441233-32441541(+)$1	308	70	77	17.8644
=======	chr1:145456496-145456823(-)$1	327	186	193	14.4745
:::::::	chr16:88851443-88851673(-)$1	230	163	170	13.5423
eeeeeHH	chr11:129997598-129997835(+)$1	237	65	72	14.4745
^^^^bb2	chr22:20106561-20106773(+)$1	212	83	90	17.8644
:::::::	chr5:65474579-65474851(+)$1	272	7	14	14.1355
uccc22e	chr11:763699-763959(+)$1	260	82	89	14.1355
nbb]ddd	chr5:891278-891505(-)$1	227	101	108	13.7118
5555bb]	chr19:17420262-17420547(+)$1	285	131	138	14.4745
ffff:::	chr5:137522684-137522928(+)$1	244	157	164	14.4745
ccc]bb2	chr11:77333599-77333819(-)$1	220	137	144	14.0508
::eeeee	chr7:102065461-102065743(+)$1	282	213	220	13.5423
33=====	chr6:163955915-163956155(+)$1	240	138	145	14.0508
ooooocc	chr16:87425893-87426149(+)$1	256	149	156	14.6440
:::::A}	chr22:30738161-30738438(-)$1	277	151	158	17.8644
dddgggg	chr15:69072230-69072511(-)$1	281	30	37	17.8644
!!bbooo	chr15:40330381-40330614(-)$1	233	111	118	17.8644
!ddddpp	chr15:44093806-44094116(+)$1	310	283	290	13.3728
nnhhhhh	chr1:43629926-43630264(-)$1	338	97	104	14.0508
333ccc]	chr5:10255965-10256187(+)$1	222	119	126	14.0508
JJJ:ddd	chr19:39923803-39924054(-)$1	251	13	20	14.4745
:::::::	chr14:24686130-24686426(-)$1	296	4	11	14.6440
EEEKKA{	chr19:13888857-13889126(+)$1	269	29	36	17.8644
rrbb555	chr10:79799863-79800083(+)$1	220	190	197	13.3728
HHHHIII	chr18:43667974-43668249(-)$1	275	90	97	17.8644
MMMMA{C	chr19:15510055-15510319(-)$1	264	154	161	17.8644
ccc22ff	chr2:47388760-47389021(-)$1	261	94	101	14.0508
EEE}EEE	chr22:30972713-30973180(-)$1	467	115	122	14.6440
rrccc33	chr17:7145536-7145846(-)$1	310	213	220	17.8644
::::bb[	chr1:70716348-70716637(+)$1	289	0	7	17.8644
:::::::	chr14:102551033-102551242(-)$1	209	40	47	17.8644
wwwwwww	chr6:26199147-26199389(-)$1	242	140	147	17.8644
eee[ccc	chr2:101622375-101622634(+)$1	259	95	102	14.0508
nnnnccc	chr17:79804204-79804486(-)$1	282	47	54	14.4745
DDD::::	chr1:153634768-153635025(-)$1	257	86	93	17.8644
iiii:::	chr17:73034917-73035259(-)$1	342	104	111	14.6440
$$$$$bb	chr14:24680785-24681048(-)$1	263	15	22	14.4745
^^^^^^^	chr16:89348460-89348702(-)$1	242	127	134	17.8644
^^^^^^^	chr1:29475062-29475332(-)$1	270	99	106	17.8644
qqqqqqq	chr17:28506114-28506413(+)$1	299	162	169	17.8644
::cccmm	chr1:150198849-150199061(-)$1	212	108	115	17.8644
hhhhhhh	chr7:140404564-140404860(+)$1	296	132	139	14.0508

#DB
)))..))	chr5:149779272-149779520(+)$1	1	202	209	17.8644
.))....	chr15:78841058-78841367(+)$1	1	166	173	17.8644
.......	chr14:102550988-102551198(-)$1	1	19	26	17.8644
((((...	chr12:76442879-76443084(-)$1	1	61	68	17.8644
))).)))	chrX:53611071-53611333(-)$1	1	127	134	14.6440
(.((((.	chr9:36211598-36211881(+)$1	1	6	13	13.9661
)))..((	chr17:7480827-7481123(+)$1	1	158	165	14.6440
)))))))	chr22:41225552-41225778(-)$1	1	101	108	13.7118
.))))))	chr17:73315174-73315431(-)$1	1	145	152	13.5423
.((((.(	chr7:99697580-99697788(-)$1	1	80	87	14.1355
..)))).	chr19:50002675-50002880(+)$1	1	193	200	14.0508
)))))))	chr12:56189713-56189919(-)$1	1	66	73	14.6440
.((..((	chr19:10505951-10506208(-)$1	1	10	17	14.6440
...))))	chr8:48889257-48889514(+)$1	1	10	17	14.0508
...))))	chr5:96369189-96369426(+)$1	1	140	147	14.0508
(((((((	chr8:124381959-124382187(-)$1	1	43	50	17.8644
)))))))	chr12:56189707-56189913(-)$1	1	60	67	14.6440
..)))))	chr20:32441233-32441541(+)$1	1	70	77	17.8644
(((((((	chr1:145456496-145456823(-)$1	1	186	193	14.4745
.......	chr16:88851443-88851673(-)$1	1	163	170	13.5423
)))))((	chr11:129997598-129997835(+)$1	1	65	72	14.4745
....)).	chr22:20106561-20106773(+)$1	1	83	90	17.8644
.......	chr5:65474579-65474851(+)$1	1	7	14	14.1355
.)))..)	chr11:763699-763959(+)$1	1	82	89	14.1355
.)).)))	chr5:891278-891505(-)$1	1	101	108	13.7118
....)).	chr19:17420262-17420547(+)$1	1	131	138	14.4745
))))...	chr5:137522684-137522928(+)$1	1	157	164	14.4745
))).)).	chr11:77333599-77333819(-)$1	1	137	144	14.0508
..(((((	chr7:102065461-102065743(+)$1	1	213	220	13.5423
..)))))	chr6:163955915-163956155(+)$1	1	138	145	14.0508
.....))	chr16:87425893-87426149(+)$1	1	149	156	14.6440
.....).	chr22:30738161-30738438(-)$1	1	151	158	17.8644
)))))))	chr15:69072230-69072511(-)$1	1	30	37	17.8644
..((...	chr15:40330381-40330614(-)$1	1	111	118	17.8644
.((((..	chr15:44093806-44094116(+)$1	1	283	290	13.3728
..)))))	chr1:43629926-43630264(-)$1	1	97	104	14.0508
...))).	chr5:10255965-10256187(+)$1	1	119	126	14.0508
(((.(((	chr19:39923803-39924054(-)$1	1	13	20	14.4745
.......	chr14:24686130-24686426(-)$1	1	4	11	14.6440
(((..(.	chr19:13888857-13889126(+)$1	1	29	36	17.8644
..))...	chr10:79799863-79800083(+)$1	1	190	197	13.3728
))))(((	chr18:43667974-43668249(-)$1	1	90	97	17.8644
....(.(	chr19:15510055-15510319(-)$1	1	154	161	17.8644
)))..))	chr2:47388760-47389021(-)$1	1	94	101	14.0508
))).)))	chr22:30972713-30973180(-)$1	1	115	122	14.6440
..)))..	chr17:7145536-7145846(-)$1	1	213	220	17.8644
....((.	chr1:70716348-70716637(+)$1	1	0	7	17.8644
.......	chr14:102551033-102551242(-)$1	1	40	47	17.8644
.......	chr6:26199147-26199389(-)$1	1	140	147	17.8644
(((.(((	chr2:101622375-101622634(+)$1	1	95	102	14.0508
....)))	chr17:79804204-79804486(-)$1	1	47	54	14.4745
(((....	chr1:153634768-153635025(-)$1	1	86	93	17.8644
))))...	chr17:73034917-73035259(-)$1	1	104	111	14.6440
.....((	chr14:24680785-24681048(-)$1	1	15	22	14.4745
.......	chr16:89348460-89348702(-)$1	1	127	134	17.8644
.......	chr1:29475062-29475332(-)$1	1	99	106	17.8644
.......	chr17:28506114-28506413(+)$1	1	162	169	17.8644
..(((..	chr1:150198849-150199061(-)$1	1	108	115	17.8644
(((((((	chr7:140404564-140404860(+)$1	1	132	139	14.0508

#PSSM
A : 0.67	G : 0.15	a : 0.11	U : 0.03	C : 0.01	
A : 0.74	a : 0.11	U : 0.10	G : 0.03	
G : 0.88	g : 0.11	
A : 0.79	a : 0.11	G : 0.05	U : 0.01	C : 0.01	
A : 0.88	a : 0.11	
G : 0.88	g : 0.11	
A : 0.69	a : 0.10	G : 0.10	U : 0.05	C : 0.03	g : 0.01	

#score	917.8135593220326
#seq	59
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_transcript_m1_run1.nuc.txt

#NT
aagaagaagaagaagaagG	chr20:57465075-57465407(+)$1	332	178	197	39.8431
AAGAUGAGGGAGAAGAUGA	chr15:69072332-69072573(-)$1	241	128	147	31.3137
aagaagaagaagaagaaga	chr14:88555972-88556278(+)$1	306	70	89	44.5490
gagaagaagaagagagaga	chr16:89348391-89348699(-)$1	308	121	140	28.8627
AAGAAGAGGAGGAAGAAGA	chr6:108192791-108193099(-)$1	308	160	179	37.5882
AGGAAGAUGAGGAGGAAGA	chr1:27269039-27269310(+)$1	271	118	137	31.2156
aggaagcaggagaggaaga	chr14:39649894-39650218(+)$1	324	13	32	30.4313
CAGAAGAUGAAGAAGAUGA	chr2:232327818-232328124(-)$1	306	179	198	34.3529
aagaaaaugaagaagauga	chr2:63239974-63240336(+)$1	362	148	167	34.0588
aagaagaagaagaagaaga	chr14:102550991-102551263(-)$1	272	84	103	44.5490
AUGAAGAAGCAGAGGAAGA	chr22:42017898-42018196(+)$1	298	147	166	33.9607
AAGAUGAAGAAAAAGAAGA	chr12:76449711-76449944(-)$1	233	43	62	36.8039
aagaagaagaugaagaaga	chr1:19422955-19423257(-)$1	302	116	135	40.9215
uagaggaagaagaagaaga	chr12:104332105-104332337(+)$1	232	91	110	36.9999
AAGAAGAAGAUGAAGAUGA	chr14:103806699-103807000(+)$1	301	170	189	37.9803
GAGAAAAAGAAGAGGAGGA	chr10:120809940-120810183(-)$1	243	100	119	30.5294
aagaagaagaaggagaaga	chr9:136905099-136905423(-)$1	324	89	108	40.5294
AUGAAGAAACAGUAGAAGA	chr6:7310055-7310342(-)$1	287	113	132	28.8627
aagaagaagaagaagaaga	chrX:154005022-154005279(+)$1	257	66	85	44.5490
GAGAGCAAGAAGCAGAAGA	chr19:11151871-11152142(+)$1	271	246	265	29.1568
GAGGAGGAGAAGAAGAAGA	chr6:44219757-44220000(+)$1	243	154	173	32.1960
aagaagaaaaagaagaaga	chr20:32693076-32693406(-)$1	330	79	98	40.3333
aaggagaagaagaaggaga	chr19:2114073-2114360(-)$1	287	207	226	35.6274
AAAAAGAAGAAAAAGAAGA	chr2:153528871-153529202(-)$1	331	124	143	35.8235
GUGAAGAAGAAGACGAUGA	chr10:101590068-101590290(+)$1	222	7	26	30.8235
aagaagaggaagaagaaga	chr2:99992737-99993003(+)$1	266	132	151	41.0196
AAGAACAAGAGGUAGCAGA	chr3:37366516-37366819(+)$1	303	66	85	28.1764
aagaagaggaagaagaaga	chr17:4575285-4575630(-)$1	345	25	44	41.0196
AAGAAGAAGAAGAAGAAGC	chr12:6711152-6711412(-)$1	260	188	207	39.8431
aagaagaagaagccgauga	chr21:27394185-27394459(-)$1	274	151	170	33.7647
AAGAUGAAGAAAAAGAAGA	chr12:76449744-76449995(-)$1	251	94	113	36.8039
cagaugaugaaggagaaga	chr9:100777552-100777822(+)$1	270	135	154	29.8431
aggaagaagaagaugaaga	chr4:174253109-174253474(-)$1	365	194	213	37.6862
AAGAAGAAUGUGAAGAAAA	chr2:11341365-11341623(-)$1	258	115	134	28.5686
AGGAAGAAGAGGAGGAAGA	chr6:30638704-30638976(-)$1	272	115	134	34.7450
AAGAAGUAGAAGAAGAUGA	chr12:104333187-104333418(+)$1	231	166	185	37.0980
AAGAAACAGCAGAAGAAGA	chr2:27592254-27592521(-)$1	267	156	175	32.3921
GAGAAGAAGAGGAAGAAGA	chr1:38435140-38435477(-)$1	337	131	150	37.6862
aaaaagaAGAUGAUGAAGA	chr8:117862756-117863032(-)$1	276	150	169	32.7843
AGGAAGAACAAGAAGAGGA	chr1:205689528-205689826(-)$1	298	156	175	33.6666
aaggagaagaagaagaaga	chr9:139734504-139734766(+)$1	262	124	143	40.1372
AGGAUGAAGGAGAAGAUGA	chr9:131456819-131457049(+)$1	230	101	120	31.7058
aagaagauggagaagaaga	chr8:124382085-124382366(-)$1	281	222	241	37.6862
aagaagaaggagaagaaga	chr8:95541192-95541533(-)$1	341	89	108	41.2156
CAGAGGAAGAAGAAAAGGA	chr6:33170238-33170574(+)$1	336	125	144	29.3529
AAGAUAAAGAGGAAGAAGA	chr6:7303689-7303950(-)$1	261	84	103	33.6666
aagaagaaagauaagaaga	chr2:99980018-99980336(+)$1	318	109	128	32.4901
AAAAAGAAGAAGGAGAAAA	chr20:17640623-17640865(-)$1	242	127	146	31.5098
aggaagaagaagaagaaga	chr12:123466179-123466499(+)$1	320	111	130	41.4117
AGGAAGAAGAAGAGUACGA	chr14:31588876-31589175(-)$1	299	101	120	29.9411

#otherMatches

#Struct PSSM
nnnnbbDDDD}A}DDDD::	chr18:10789152-10789449(-)$1	297	125	144	34.0588
qqqqqqqbb:::::::::E	chr20:57465075-57465407(+)$1	332	178	197	39.8431
::dddd[ccc[ffffffcc	chr15:69072332-69072573(-)$1	241	128	147	31.3137
ddeeeee::::::::::::	chr14:88555972-88556278(+)$1	306	70	89	44.5490
^^^^^^^^^^^^^^^^^^^	chr16:89348391-89348699(-)$1	308	121	140	28.8627
ZZBBYYJJJJJJJJJJJYY	chr6:108192791-108193099(-)$1	308	160	179	37.5882
bb22hhhhhhhh4444ddd	chr1:27269039-27269310(+)$1	271	118	137	31.2156
:::::::::::::::::::	chr14:39649894-39650218(+)$1	324	13	32	30.4313
eewwwwwwwwwwwwwweee	chr2:232327818-232328124(-)$1	306	179	198	34.3529
::::::::::::::::ddd	chr2:63239974-63240336(+)$1	362	148	167	34.0588
^^^^^^^^^^^^^^^^^^^	chr14:102550991-102551263(-)$1	272	84	103	44.5490
f:::FFFFFF:EEEEE:::	chr22:42017898-42018196(+)$1	298	147	166	33.9607
eeeee!!bb$$$$$ccc!!	chr12:76449711-76449944(-)$1	233	43	62	36.8039
ddd22dddd]a]ccc]ggg	chr1:19422955-19423257(-)$1	302	116	135	40.9215
ddd[ccc[bb+++++++++	chr12:104332105-104332337(+)$1	232	91	110	36.9999
ttttggggggg:::ddddm	chr14:103806699-103807000(+)$1	301	170	189	37.9803
::::::dddd!!a!!ffff	chr10:120809940-120810183(-)$1	243	100	119	30.5294
^^^^^^^^^^^bb]a6666	chr9:136905099-136905423(-)$1	324	89	108	40.5294
+++++++++++++++++++	chr6:7310055-7310342(-)$1	287	113	132	28.8627
99999999ggggggg]ddd	chrX:154005022-154005279(+)$1	257	66	85	44.5490
\\\\\\\\\GGGGGGG}AY	chr19:11151871-11152142(+)$1	271	246	265	29.1568
^^^^^^^^^^^^^^^^^^^	chr6:44219757-44220000(+)$1	243	154	173	32.1960
::::::::::::::::eee	chr20:32693076-32693406(-)$1	330	79	98	40.3333
eeee[bb[a!!ccchhhhh	chr19:2114073-2114360(-)$1	287	207	226	35.6274
]ffffff:::::::::EEE	chr2:153528871-153529202(-)$1	331	124	143	35.8235
C{JJJJJJJJJJJ::ccc!	chr10:101590068-101590290(+)$1	222	7	26	30.8235
:::::::::::::::::::	chr2:99992737-99993003(+)$1	266	132	151	41.0196
++++++++++cccoooooo	chr3:37366516-37366819(+)$1	303	66	85	28.1764
:::::::::::::::::::	chr17:4575285-4575630(-)$1	345	25	44	41.0196
EEE::::::::::::::gg	chr12:6711152-6711412(-)$1	260	188	207	39.8431
ffffeeeee22acccccc7	chr21:27394185-27394459(-)$1	274	151	170	33.7647
cc]bb88888888ccceee	chr12:76449744-76449995(-)$1	251	94	113	36.8039
eeee!!dddd[a[bb++++	chr9:100777552-100777822(+)$1	270	135	154	29.8431
@@@@@@JJJJJJJJJJJJ:	chr4:174253109-174253474(-)$1	365	194	213	37.6862
DDD:::::eeeee&&&&&&	chr2:11341365-11341623(-)$1	258	115	134	28.5686
eee::::::::::::::::	chr6:30638704-30638976(-)$1	272	115	134	34.7450
22eeeee::::hhhhhhhh	chr12:104333187-104333418(+)$1	231	166	185	37.0980
rrrrrra22a]dddd::::	chr2:27592254-27592521(-)$1	267	156	175	32.3921
dddd:FFFFFFYYGGGGGG	chr1:38435140-38435477(-)$1	337	131	150	37.6862
:::::eeeee!!ffffff[	chr8:117862756-117863032(-)$1	276	150	169	32.7843
>>>>>>>>>>eeeee22a]	chr1:205689528-205689826(-)$1	298	156	175	33.6666
mmmccc:::::::::::::	chr9:139734504-139734766(+)$1	262	124	143	40.1372
GGGKKJJJJJJJJJJJ{BB	chr9:131456819-131457049(+)$1	230	101	120	31.7058
^^^^^^^^^^^^^^^^^^^	chr8:124382085-124382366(-)$1	281	222	241	37.6862
:::::::::::::::::::	chr8:95541192-95541533(-)$1	341	89	108	41.2156
d]dddd22==========:	chr6:33170238-33170574(+)$1	336	125	144	29.3529
ffff22ffffff]cccbb[	chr6:7303689-7303950(-)$1	261	84	103	33.6666
iiiii]dddd4444dddd5	chr2:99980018-99980336(+)$1	318	109	128	32.4901
::::::::ddddeeeee$$	chr20:17640623-17640865(-)$1	242	127	146	31.5098
==========ggggggg22	chr12:123466179-123466499(+)$1	320	111	130	41.4117
eeee$$$$$ggggggg[cc	chr14:31588876-31589175(-)$1	299	101	120	29.9411

#DB
....)))))).).))))..	chr18:10789152-10789449(-)$1	1	125	144	34.0588
.......)).........)	chr20:57465075-57465407(+)$1	1	178	197	39.8431
..((((.(((.((((((((	chr15:69072332-69072573(-)$1	1	128	147	31.3137
)))))))............	chr14:88555972-88556278(+)$1	1	70	89	44.5490
...................	chr16:89348391-89348699(-)$1	1	121	140	28.8627
..))..)))))))))))..	chr6:108192791-108193099(-)$1	1	160	179	37.5882
))..))))))))....)))	chr1:27269039-27269310(+)$1	1	118	137	31.2156
...................	chr14:39649894-39650218(+)$1	1	13	32	30.4313
((..............)))	chr2:232327818-232328124(-)$1	1	179	198	34.3529
................(((	chr2:63239974-63240336(+)$1	1	148	167	34.0588
...................	chr14:102550991-102551263(-)$1	1	84	103	44.5490
)...)))))).(((((...	chr22:42017898-42018196(+)$1	1	147	166	33.9607
(((((..((.....(((..	chr12:76449711-76449944(-)$1	1	43	62	36.8039
)))..)))).).))).)))	chr1:19422955-19423257(-)$1	1	116	135	40.9215
(((.(((.((.........	chr12:104332105-104332337(+)$1	1	91	110	36.9999
....)))))))...((((.	chr14:103806699-103807000(+)$1	1	170	189	37.9803
......((((..(..((((	chr10:120809940-120810183(-)$1	1	100	119	30.5294
...........)).)....	chr9:136905099-136905423(-)$1	1	89	108	40.5294
...................	chr6:7310055-7310342(-)$1	1	113	132	28.8627
........))))))).)))	chrX:154005022-154005279(+)$1	1	66	85	44.5490
.........))))))).).	chr19:11151871-11152142(+)$1	1	246	265	29.1568
...................	chr6:44219757-44220000(+)$1	1	154	173	32.1960
................(((	chr20:32693076-32693406(-)$1	1	79	98	40.3333
((((.((.(..((((((((	chr19:2114073-2114360(-)$1	1	207	226	35.6274
.)))))).........(((	chr2:153528871-153529202(-)$1	1	124	143	35.8235
(.(((((((((((..(((.	chr10:101590068-101590290(+)$1	1	7	26	30.8235
...................	chr2:99992737-99993003(+)$1	1	132	151	41.0196
..........(((......	chr3:37366516-37366819(+)$1	1	66	85	28.1764
...................	chr17:4575285-4575630(-)$1	1	25	44	41.0196
)))..............((	chr12:6711152-6711412(-)$1	1	188	207	39.8431
)))))))))..))))))).	chr21:27394185-27394459(-)$1	1	151	170	33.7647
)).))........))))))	chr12:76449744-76449995(-)$1	1	94	113	36.8039
((((..((((.(.((....	chr9:100777552-100777822(+)$1	1	135	154	29.8431
......)))))))))))).	chr4:174253109-174253474(-)$1	1	194	213	37.6862
(((.....(((((......	chr2:11341365-11341623(-)$1	1	115	134	28.5686
)))................	chr6:30638704-30638976(-)$1	1	115	134	34.7450
..)))))....((((((((	chr12:104333187-104333418(+)$1	1	166	185	37.0980
......)..).))))....	chr2:27592254-27592521(-)$1	1	156	175	32.3921
)))).))))))..))))))	chr1:38435140-38435477(-)$1	1	131	150	37.6862
.....(((((..((((((.	chr8:117862756-117863032(-)$1	1	150	169	32.7843
..........)))))..).	chr1:205689528-205689826(-)$1	1	156	175	33.6666
...))).............	chr9:139734504-139734766(+)$1	1	124	143	40.1372
(((..(((((((((((.((	chr9:131456819-131457049(+)$1	1	101	120	31.7058
...................	chr8:124382085-124382366(-)$1	1	222	241	37.6862
...................	chr8:95541192-95541533(-)$1	1	89	108	41.2156
).))))..)))))))))).	chr6:33170238-33170574(+)$1	1	125	144	29.3529
))))..)))))).)))((.	chr6:7303689-7303950(-)$1	1	84	103	33.6666
))))).))))....)))).	chr2:99980018-99980336(+)$1	1	109	128	32.4901
........(((((((((..	chr20:17640623-17640865(-)$1	1	127	146	31.5098
)))))))))))))))))..	chr12:123466179-123466499(+)$1	1	111	130	41.4117
((((.....(((((((.((	chr14:31588876-31589175(-)$1	1	101	120	29.9411

#PSSM
a : 0.41	A : 0.39	G : 0.09	C : 0.03	g : 0.01	u : 0.01	c : 0.01	
a : 0.41	A : 0.37	G : 0.09	g : 0.05	U : 0.05	
G : 0.49	g : 0.45	A : 0.03	a : 0.01	
A : 0.50	a : 0.43	g : 0.03	G : 0.01	
a : 0.41	A : 0.39	U : 0.09	g : 0.03	G : 0.03	u : 0.01	
g : 0.45	G : 0.43	A : 0.05	C : 0.03	a : 0.01	
A : 0.47	a : 0.45	c : 0.01	G : 0.01	U : 0.01	C : 0.01	
A : 0.47	a : 0.33	g : 0.05	u : 0.05	G : 0.03	U : 0.03	
G : 0.49	g : 0.41	a : 0.03	A : 0.01	U : 0.01	C : 0.01	
A : 0.43	a : 0.37	g : 0.07	G : 0.05	C : 0.05	
a : 0.43	A : 0.37	G : 0.11	U : 0.05	u : 0.01	
G : 0.49	g : 0.43	A : 0.05	u : 0.01	
A : 0.47	a : 0.39	g : 0.03	U : 0.03	C : 0.01	c : 0.01	G : 0.01	
A : 0.41	a : 0.37	G : 0.09	g : 0.03	C : 0.01	c : 0.01	u : 0.01	U : 0.01	
G : 0.50	g : 0.43	a : 0.01	A : 0.01	U : 0.01	
A : 0.52	a : 0.41	g : 0.03	C : 0.01	
a : 0.39	A : 0.35	U : 0.11	G : 0.05	u : 0.03	g : 0.01	C : 0.01	
G : 0.50	g : 0.45	A : 0.03	
A : 0.52	a : 0.43	G : 0.01	C : 0.01	

#score	1800.1372549019602
#seq	51
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_UTR_m2_run2.nuc.txt

#NT
CUGGAGA	chr19:48981433-48981705(+)$1	272	125	132	12.8939
CUGGAGG	chr8:130951748-130952074(-)$1	326	202	209	17.1363
CUGCAGG	chr19:18568908-18569189(-)$1	281	86	93	13.0454
CUGGACG	chr6:3068681-3069022(+)$1	341	184	191	12.8939
caggagg	chr16:22337224-22337508(+)$1	284	42	49	13.4999
CUGGAGG	chr12:120884466-120884759(+)$1	293	155	162	17.1363
CUGGAGC	chr2:109150910-109151184(+)$1	274	51	58	12.8939
CUGGGGG	chr17:46052782-46053042(+)$1	260	184	191	13.7272
CUGGCGG	chr2:46926353-46926623(+)$1	270	40	47	13.8787
CUGGAGU	chr12:72056706-72057055(-)$1	349	132	139	12.7424
CUGGCGG	chr9:134357762-134358029(+)$1	267	127	134	13.8787
CUGGUGG	chr18:10789119-10789444(-)$1	325	230	237	13.6515
CUGGCGG	chr21:48055482-48055854(+)$1	372	150	157	13.8787
CUGGCGG	chr2:61404603-61404871(+)$1	268	156	163	13.8787
CUGGAGG	chr16:16259421-16259718(-)$1	297	152	159	17.1363
CUGGAGA	chr17:2268126-2268445(+)$1	319	162	169	12.8939
CAGGAGG	chr4:184020631-184020906(+)$1	275	111	118	13.4999
GUGGAGG	chr7:44609301-44609553(-)$1	252	140	147	12.5909
CUGCAGG	chr22:46751242-46751554(+)$1	312	92	99	13.0454
CUGGAGG	chr2:231921497-231921855(+)$1	358	282	289	17.1363
CUGGAGG	chr16:8768376-8768727(+)$1	351	186	193	17.1363
CAGGAGG	chr17:42284720-42284982(-)$1	262	203	210	13.4999
CUGGUGG	chr16:2142405-2142706(-)$1	301	44	51	13.6515
CUGGACG	chr6:42531936-42532320(+)$1	384	267	274	12.8939
CUGGAGG	chr5:154172202-154172461(+)$1	259	228	235	17.1363
CGGGAGG	chr2:43019518-43019812(-)$1	294	98	105	13.0454
guggagg	chr4:39699684-39700000(+)$1	316	183	190	12.5909
CUGGAAG	chr11:129992100-129992356(+)$1	256	121	128	12.8939
CUGGAUG	chr22:47370078-47370407(+)$1	329	7	14	12.7424
CUGGCGG	chr19:42399321-42399640(+)$1	319	35	42	13.8787
CUGGAGG	chr11:70275118-70275406(+)$1	288	181	188	17.1363
CUGGAAG	chr16:89865277-89865530(-)$1	253	202	209	12.8939
CAGGAGG	chr9:117008045-117008293(+)$1	248	41	48	13.4999
CUGGAGG	chr1:31501524-31501784(-)$1	260	118	125	17.1363
cuggcgg	chr4:79697410-79697796(+)$1	386	354	361	13.8787
CUGGAGG	chr10:735356-735624(-)$1	268	121	128	17.1363
CUGGAGG	chr16:29985803-29986060(+)$1	257	110	117	17.1363
CUGGAGC	chr21:34143740-34144183(-)$1	443	107	114	12.8939
CCGGAGG	chr6:36562097-36562345(+)$1	248	90	97	13.1969
CUGAAGG	chrX:102941462-102941728(-)$1	266	28	35	12.7424
CUGCAGG	chr19:36290907-36291169(-)$1	262	39	46	13.0454
CUGCAGG	chr9:117052413-117052711(+)$1	298	93	100	13.0454
CUGGUGG	chr14:32546372-32546617(+)$1	245	3	10	13.6515
CUGGGGG	chr1:244998896-244999220(+)$1	324	167	174	13.7272
CUGGGGG	chr6:43465517-43465811(+)$1	294	0	7	13.7272
CUGUAGG	chr17:40270262-40270484(-)$1	222	189	196	12.7424
ccggagg	chr22:19418878-19419264(-)$1	386	159	166	13.1969
CUGGAGG	chr16:71487069-71487345(-)$1	276	127	134	17.1363
CAGGAGG	chr3:8676878-8677168(-)$1	290	98	105	13.4999
CUGGACG	chr14:35099015-35099279(-)$1	264	125	132	12.8939
CUGGAGA	chr9:117050634-117050886(+)$1	252	146	153	12.8939
CAGGAGG	chr3:149688471-149688768(-)$1	297	176	183	13.4999
CUGCAGG	chr6:24775106-24775474(+)$1	368	347	354	13.0454
CUGGGGG	chr17:48628920-48629174(+)$1	254	98	105	13.7272
cuggaag	chr11:843428-843726(+)$1	298	45	52	12.8939
CUGGUGG	chr21:45736247-45736509(+)$1	262	67	74	13.6515
CUGGAGG	chr16:23569163-23569436(+)$1	273	181	188	17.1363
CCGGAGG	chr9:132805163-132805540(-)$1	377	157	164	13.1969
guggagg	chr16:31201589-31201819(+)$1	230	18	25	12.5909
CUGGAGG	chr11:66384001-66384291(+)$1	290	143	150	17.1363
CUGGAGC	chr17:45727673-45727924(+)$1	251	83	90	12.8939
CUGGAGG	chr22:41842286-41842551(-)$1	265	112	119	17.1363
CAGGAGG	chr2:232576550-232576781(+)$1	231	67	74	13.4999
CUGGAGG	chr9:100881223-100881578(-)$1	355	291	298	17.1363
CUGGGGG	chr7:22396335-22396624(-)$1	289	165	172	13.7272

#otherMatches

#Struct PSSM
cccmmmm	chr22:43410884-43411214(-)$1	330	51	58	13.8787
hhhhhhh	chr19:48981433-48981705(+)$1	272	125	132	12.8939
CC}BB}C	chr8:130951748-130952074(-)$1	326	202	209	17.1363
[ddddmm	chr19:18568908-18569189(-)$1	281	86	93	13.0454
=====]d	chr6:3068681-3069022(+)$1	341	184	191	12.8939
C:fffff	chr16:22337224-22337508(+)$1	284	42	49	13.4999
dddnnnn	chr12:120884466-120884759(+)$1	293	155	162	17.1363
iiii]bb	chr2:109150910-109151184(+)$1	274	51	58	12.8939
::EEEEE	chr17:46052782-46053042(+)$1	260	184	191	13.7272
DKKHHHH	chr2:46926353-46926623(+)$1	270	40	47	13.8787
eecccii	chr12:72056706-72057055(-)$1	349	132	139	12.7424
EEOOOOO	chr9:134357762-134358029(+)$1	267	127	134	13.8787
cmmmmcc	chr18:10789119-10789444(-)$1	325	230	237	13.6515
f]dddd2	chr21:48055482-48055854(+)$1	372	150	157	13.8787
dddd[ii	chr2:61404603-61404871(+)$1	268	156	163	13.8787
33ddddG	chr16:16259421-16259718(-)$1	297	152	159	17.1363
77bb]ee	chr17:2268126-2268445(+)$1	319	162	169	12.8939
55hhhhh	chr4:184020631-184020906(+)$1	275	111	118	13.4999
ggggggg	chr7:44609301-44609553(-)$1	252	140	147	12.5909
b[eeeee	chr22:46751242-46751554(+)$1	312	92	99	13.0454
GGGG}CC	chr2:231921497-231921855(+)$1	358	282	289	17.1363
ccca]bb	chr16:8768376-8768727(+)$1	351	186	193	17.1363
ffffppp	chr17:42284720-42284982(-)$1	262	203	210	13.4999
ccc]eee	chr16:2142405-2142706(-)$1	301	44	51	13.6515
DDD}BB}	chr6:42531936-42532320(+)$1	384	267	274	12.8939
ee22bb2	chr5:154172202-154172461(+)$1	259	228	235	17.1363
bffffff	chr2:43019518-43019812(-)$1	294	98	105	13.0454
ff333cc	chr4:39699684-39700000(+)$1	316	183	190	12.5909
dd&&&&&	chr11:129992100-129992356(+)$1	256	121	128	12.8939
CCC{BB:	chr22:47370078-47370407(+)$1	329	7	14	12.7424
HKKBBbb	chr19:42399321-42399640(+)$1	319	35	42	13.8787
dddd::c	chr11:70275118-70275406(+)$1	288	181	188	17.1363
IIIIIII	chr16:89865277-89865530(-)$1	253	202	209	12.8939
llhhhhh	chr9:117008045-117008293(+)$1	248	41	48	13.4999
44=====	chr1:31501524-31501784(-)$1	260	118	125	17.1363
YYGGGGG	chr4:79697410-79697796(+)$1	386	354	361	13.8787
dddd[ee	chr10:735356-735624(-)$1	268	121	128	17.1363
dcccooo	chr16:29985803-29986060(+)$1	257	110	117	17.1363
qqqqqqq	chr21:34143740-34144183(-)$1	443	107	114	12.8939
eeee555	chr6:36562097-36562345(+)$1	248	90	97	13.1969
CLLLCCC	chrX:102941462-102941728(-)$1	266	28	35	12.7424
gggg[ee	chr19:36290907-36291169(-)$1	262	39	46	13.0454
cc"""ff	chr9:117052413-117052711(+)$1	298	93	100	13.0454
d[a[ddd	chr14:32546372-32546617(+)$1	245	3	10	13.6515
cc]ccc]	chr1:244998896-244999220(+)$1	324	167	174	13.7272
GGGGGGG	chr6:43465517-43465811(+)$1	294	0	7	13.7272
GGGGGGG	chr17:40270262-40270484(-)$1	222	189	196	12.7424
cccnnnn	chr22:19418878-19419264(-)$1	386	159	166	13.1969
33a]ccc	chr16:71487069-71487345(-)$1	276	127	134	17.1363
fffffff	chr3:8676878-8677168(-)$1	290	98	105	13.4999
!!dddd$	chr14:35099015-35099279(-)$1	264	125	132	12.8939
ccFFFFF	chr9:117050634-117050886(+)$1	252	146	153	12.8939
ff4444c	chr3:149688471-149688768(-)$1	297	176	183	13.4999
cc]eeee	chr6:24775106-24775474(+)$1	368	347	354	13.0454
$$ggggg	chr17:48628920-48629174(+)$1	254	98	105	13.7272
DDKKCCC	chr11:843428-843726(+)$1	298	45	52	12.8939
!ddddcc	chr21:45736247-45736509(+)$1	262	67	74	13.6515
cmmmmcc	chr16:23569163-23569436(+)$1	273	181	188	17.1363
ccooooo	chr9:132805163-132805540(-)$1	377	157	164	13.1969
nnnnnbb	chr16:31201589-31201819(+)$1	230	18	25	12.5909
ppbb22d	chr11:66384001-66384291(+)$1	290	143	150	17.1363
22dddd]	chr17:45727673-45727924(+)$1	251	83	90	12.8939
cmmmmcc	chr22:41842286-41842551(-)$1	265	112	119	17.1363
ffffff[	chr2:232576550-232576781(+)$1	231	67	74	13.4999
===22ee	chr9:100881223-100881578(-)$1	355	291	298	17.1363
ee:====	chr7:22396335-22396624(-)$1	289	165	172	13.7272

#DB
(((....	chr22:43410884-43411214(-)$1	1	51	58	13.8787
)))))))	chr19:48981433-48981705(+)$1	1	125	132	12.8939
)).)).)	chr8:130951748-130952074(-)$1	1	202	209	17.1363
.((((..	chr19:18568908-18569189(-)$1	1	86	93	13.0454
))))).)	chr6:3068681-3069022(+)$1	1	184	191	12.8939
(.(((((	chr16:22337224-22337508(+)$1	1	42	49	13.4999
(((....	chr12:120884466-120884759(+)$1	1	155	162	17.1363
)))).))	chr2:109150910-109151184(+)$1	1	51	58	12.8939
..)))))	chr17:46052782-46053042(+)$1	1	184	191	13.7272
(..((((	chr2:46926353-46926623(+)$1	1	40	47	13.8787
)))))))	chr12:72056706-72057055(-)$1	1	132	139	12.7424
((.....	chr9:134357762-134358029(+)$1	1	127	134	13.8787
(....))	chr18:10789119-10789444(-)$1	1	230	237	13.6515
).)))).	chr21:48055482-48055854(+)$1	1	150	157	13.8787
((((.((	chr2:61404603-61404871(+)$1	1	156	163	13.8787
..)))))	chr16:16259421-16259718(-)$1	1	152	159	17.1363
..)).))	chr17:2268126-2268445(+)$1	1	162	169	12.8939
..)))))	chr4:184020631-184020906(+)$1	1	111	118	13.4999
(((((((	chr7:44609301-44609553(-)$1	1	140	147	12.5909
(.(((((	chr22:46751242-46751554(+)$1	1	92	99	13.0454
)))).))	chr2:231921497-231921855(+)$1	1	282	289	17.1363
)))).))	chr16:8768376-8768727(+)$1	1	186	193	17.1363
((((...	chr17:42284720-42284982(-)$1	1	203	210	13.4999
))).)))	chr16:2142405-2142706(-)$1	1	44	51	13.6515
))).)).	chr6:42531936-42532320(+)$1	1	267	274	12.8939
))..)).	chr5:154172202-154172461(+)$1	1	228	235	17.1363
(((((((	chr2:43019518-43019812(-)$1	1	98	105	13.0454
))...))	chr4:39699684-39700000(+)$1	1	183	190	12.5909
((.....	chr11:129992100-129992356(+)$1	1	121	128	12.8939
(((.((.	chr22:47370078-47370407(+)$1	1	7	14	12.7424
(..((((	chr19:42399321-42399640(+)$1	1	35	42	13.8787
))))..(	chr11:70275118-70275406(+)$1	1	181	188	17.1363
)))))))	chr16:89865277-89865530(-)$1	1	202	209	12.8939
..)))))	chr9:117008045-117008293(+)$1	1	41	48	13.4999
..)))))	chr1:31501524-31501784(-)$1	1	118	125	17.1363
..)))))	chr4:79697410-79697796(+)$1	1	354	361	13.8787
((((.((	chr10:735356-735624(-)$1	1	121	128	17.1363
((((...	chr16:29985803-29986060(+)$1	1	110	117	17.1363
.......	chr21:34143740-34144183(-)$1	1	107	114	12.8939
))))...	chr6:36562097-36562345(+)$1	1	90	97	13.1969
(...(((	chrX:102941462-102941728(-)$1	1	28	35	12.7424
((((.((	chr19:36290907-36291169(-)$1	1	39	46	13.0454
((...((	chr9:117052413-117052711(+)$1	1	93	100	13.0454
(.(.(((	chr14:32546372-32546617(+)$1	1	3	10	13.6515
)).))).	chr1:244998896-244999220(+)$1	1	167	174	13.7272
(((((((	chr6:43465517-43465811(+)$1	1	0	7	13.7272
)))))))	chr17:40270262-40270484(-)$1	1	189	196	12.7424
(((....	chr22:19418878-19419264(-)$1	1	159	166	13.1969
..).)))	chr16:71487069-71487345(-)$1	1	127	134	17.1363
(((((((	chr3:8676878-8677168(-)$1	1	98	105	13.4999
..((((.	chr14:35099015-35099279(-)$1	1	125	132	12.8939
)))))))	chr9:117050634-117050886(+)$1	1	146	153	12.8939
))....)	chr3:149688471-149688768(-)$1	1	176	183	13.4999
)).))))	chr6:24775106-24775474(+)$1	1	347	354	13.0454
..(((((	chr17:48628920-48629174(+)$1	1	98	105	13.7272
((..(((	chr11:843428-843726(+)$1	1	45	52	12.8939
.((((((	chr21:45736247-45736509(+)$1	1	67	74	13.6515
(....))	chr16:23569163-23569436(+)$1	1	181	188	17.1363
((.....	chr9:132805163-132805540(-)$1	1	157	164	13.1969
.....))	chr16:31201589-31201819(+)$1	1	18	25	12.5909
..))..)	chr11:66384001-66384291(+)$1	1	143	150	17.1363
..)))).	chr17:45727673-45727924(+)$1	1	83	90	12.8939
(....))	chr22:41842286-41842551(-)$1	1	112	119	17.1363
((((((.	chr2:232576550-232576781(+)$1	1	67	74	13.4999
)))..))	chr9:100881223-100881578(-)$1	1	291	298	17.1363
)).((((	chr7:22396335-22396624(-)$1	1	165	172	13.7272

#PSSM
C : 0.89	c : 0.06	g : 0.03	G : 0.01	
U : 0.77	A : 0.09	u : 0.06	C : 0.03	a : 0.01	G : 0.01	c : 0.01	
G : 0.90	g : 0.09	
G : 0.80	g : 0.09	C : 0.07	A : 0.01	U : 0.01	
A : 0.68	C : 0.09	a : 0.07	G : 0.07	U : 0.06	c : 0.01	
G : 0.81	g : 0.07	C : 0.04	A : 0.03	U : 0.01	a : 0.01	
G : 0.80	g : 0.09	A : 0.04	C : 0.04	U : 0.01	

#score	933.2727272727263
#seq	66
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_CDS_m2_run1.nuc.txt

#NT
UCU	chr1:19455374-19455650(-)$1	276	58	61	9.0000
UCU	chr10:93768575-93768792(+)$1	217	0	3	9.0000
UCU	chr2:44200833-44201099(-)$1	266	122	125	9.0000
UCU	chr19:46352012-46352235(-)$1	223	55	58	9.0000
UCU	chr19:1271346-1271566(+)$1	220	59	62	9.0000
UCU	chr17:4793707-4793949(+)$1	242	7	10	9.0000
UCU	chrX:153281954-153282196(-)$1	242	40	43	9.0000
UCU	chr15:101972083-101972389(-)$1	306	49	52	9.0000
UCU	chr1:43907871-43908128(+)$1	257	25	28	9.0000
UCU	chr7:38836237-38836498(-)$1	261	0	3	9.0000
UCU	chr22:18371780-18372097(-)$1	317	46	49	9.0000
UCU	chr6:33381212-33381436(+)$1	224	30	33	9.0000
UCU	chr5:145502032-145502250(-)$1	218	21	24	9.0000
UCU	chr6:33179036-33179306(+)$1	270	22	25	9.0000
UCU	chr3:47030738-47030960(+)$1	222	73	76	9.0000
UCU	chr1:235420374-235420628(-)$1	254	0	3	9.0000
UCU	chr3:171965347-171965671(+)$1	324	23	26	9.0000
UCU	chr6:30877726-30877936(+)$1	210	23	26	9.0000
UCU	chr16:47531244-47531499(+)$1	255	7	10	9.0000
UCU	chr9:95027120-95027351(-)$1	231	1	4	9.0000
UCU	chr3:50154405-50154634(+)$1	229	62	65	9.0000
UCU	chr12:108923815-108924059(-)$1	244	150	153	9.0000
UCU	chr20:60890985-60891251(-)$1	266	7	10	9.0000
UCU	chr8:141568484-141568775(-)$1	291	35	38	9.0000
UCU	chr6:4044104-4044354(+)$1	250	29	32	9.0000
UCU	chr3:9969755-9970005(+)$1	250	102	105	9.0000
UCU	chr5:61847023-61847268(+)$1	245	52	55	9.0000
UCU	chr7:158723045-158723299(+)$1	254	59	62	9.0000
UCU	chr2:172549222-172549506(+)$1	284	111	114	9.0000
UCU	chr7:128480789-128481046(+)$1	257	87	90	9.0000
UCU	chr16:67271041-67271280(-)$1	239	26	29	9.0000
UCU	chr15:89857808-89858035(+)$1	227	13	16	9.0000
UCU	chr20:33902390-33902639(-)$1	249	26	29	9.0000
uCU	chr21:34988911-34989148(-)$1	237	78	81	9.0000
UCU	chr19:54966162-54966368(+)$1	206	115	118	9.0000
UCU	chr6:31726532-31726752(+)$1	220	74	77	9.0000
UCU	chr6:20739665-20739944(+)$1	279	64	67	9.0000
UCU	chr1:154207584-154207867(+)$1	283	23	26	9.0000
UCU	chr8:100160104-100160339(+)$1	235	10	13	9.0000
UCU	chr6:29589780-29590007(-)$1	227	27	30	9.0000
UCU	chr6:168323435-168323657(+)$1	222	36	39	9.0000
UCU	chr1:220406040-220406305(-)$1	265	18	21	9.0000
UCU	chr6:90363796-90364063(-)$1	267	36	39	9.0000
UCU	chr6:35855722-35855989(-)$1	267	27	30	9.0000
UCU	chr6:30879416-30879696(+)$1	280	32	35	9.0000
UCU	chr7:100175019-100175277(-)$1	258	10	13	9.0000
UCU	chr19:40330825-40331068(-)$1	243	83	86	9.0000
UCU	chr16:29990019-29990261(+)$1	242	43	46	9.0000
UCU	chr1:19565622-19565904(-)$1	282	11	14	9.0000
UCU	chr11:3765754-3765980(-)$1	226	41	44	9.0000
UCU	chr6:31607956-31608185(-)$1	229	85	88	9.0000
UCU	chr8:41545571-41545814(-)$1	243	48	51	9.0000
UCU	chr3:50154474-50154706(+)$1	232	20	23	9.0000
UCU	chr11:71174998-71175291(+)$1	293	0	3	9.0000
UCU	chr1:237025435-237025700(+)$1	265	81	84	9.0000
UCU	chr12:112743902-112744141(-)$1	239	7	10	9.0000
UCU	chr6:33261711-33261928(-)$1	217	24	27	9.0000
UCU	chr9:95040380-95040662(-)$1	282	33	36	9.0000
UCU	chr13:115000385-115000703(+)$1	318	266	269	9.0000
UCU	chr21:45742749-45742970(+)$1	221	22	25	9.0000
UCU	chr13:79942858-79943165(-)$1	307	27	30	9.0000
UCU	chr5:134146818-134147073(+)$1	255	26	29	9.0000
UCU	chr15:89858412-89858621(+)$1	209	14	17	9.0000
UCU	chrX:70776725-70776957(+)$1	232	66	69	9.0000
UCU	chr21:47642444-47642698(-)$1	254	29	32	9.0000
UCU	chr11:293266-293537(+)$1	271	135	138	9.0000
UCU	chr14:31143027-31143299(+)$1	272	8	11	9.0000
UCU	chr20:49236422-49236631(-)$1	209	45	48	9.0000
UCU	chr10:103870535-103870774(-)$1	239	8	11	9.0000
UCU	chr9:111674609-111674825(-)$1	216	5	8	9.0000
UCU	chr11:120348067-120348383(+)$1	316	79	82	9.0000
UCU	chr1:155891171-155891442(-)$1	271	10	13	9.0000
UCU	chr15:28358619-28358854(-)$1	235	22	25	9.0000
UCU	chr8:41584667-41584889(-)$1	222	8	11	9.0000
UCU	chr18:52937002-52937288(-)$1	286	77	80	9.0000
UCU	chr17:64641420-64641738(+)$1	318	60	63	9.0000
UCU	chr1:38434994-38435237(-)$1	243	0	3	9.0000
UCU	chr1:12309247-12309495(+)$1	248	14	17	9.0000
UCU	chr1:12333034-12333291(+)$1	257	61	64	9.0000
UCU	chr1:236988537-236988783(+)$1	246	35	38	9.0000
UCU	chr7:100282969-100283201(-)$1	232	68	71	9.0000
UCU	chr20:31390116-31390386(+)$1	270	13	16	9.0000
UCU	chr19:46120786-46121049(-)$1	263	61	64	9.0000
UCU	chr2:61712938-61713198(-)$1	260	16	19	9.0000
UCU	chr10:72489877-72490105(+)$1	228	210	213	9.0000
UCU	chr21:34134483-34134730(-)$1	247	16	19	9.0000
UCU	chr22:42292996-42293262(+)$1	266	45	48	9.0000
UCU	chr22:43227451-43227683(-)$1	232	0	3	9.0000
UCU	chr1:160201065-160201298(-)$1	233	7	10	9.0000
UCU	chr22:26165991-26166238(+)$1	247	79	82	9.0000
UCU	chr1:237026653-237026898(+)$1	245	12	15	9.0000
UCU	chr7:127630981-127631209(+)$1	228	5	8	9.0000
UCU	chr19:1219221-1219512(+)$1	291	32	35	9.0000
UCU	chr4:151719128-151719372(-)$1	244	40	43	9.0000
UCU	chr7:891541-891784(+)$1	243	35	38	9.0000
UCU	chr17:36873999-36874240(+)$1	241	0	3	9.0000
UCU	chr10:93742355-93742618(+)$1	263	83	86	9.0000

#otherMatches

#Struct PSSM
mmd	chr12:125284570-125284889(-)$1	319	23	26	9.0000
666	chr1:19455374-19455650(-)$1	276	58	61	9.0000
:::	chr10:93768575-93768792(+)$1	217	0	3	9.0000
dd[	chr2:44200833-44201099(-)$1	266	122	125	9.0000
cc:	chr19:46352012-46352235(-)$1	223	55	58	9.0000
[bb	chr19:1271346-1271566(+)$1	220	59	62	9.0000
ddd	chr17:4793707-4793949(+)$1	242	7	10	9.0000
bb#	chrX:153281954-153282196(-)$1	242	40	43	9.0000
eee	chr15:101972083-101972389(-)$1	306	49	52	9.0000
ddd	chr1:43907871-43908128(+)$1	257	25	28	9.0000
CCC	chr7:38836237-38836498(-)$1	261	0	3	9.0000
ddd	chr22:18371780-18372097(-)$1	317	46	49	9.0000
FF{	chr6:33381212-33381436(+)$1	224	30	33	9.0000
c[f	chr5:145502032-145502250(-)$1	218	21	24	9.0000
eee	chr6:33179036-33179306(+)$1	270	22	25	9.0000
ccc	chr3:47030738-47030960(+)$1	222	73	76	9.0000
:::	chr1:235420374-235420628(-)$1	254	0	3	9.0000
mmm	chr3:171965347-171965671(+)$1	324	23	26	9.0000
:::	chr6:30877726-30877936(+)$1	210	23	26	9.0000
"""	chr16:47531244-47531499(+)$1	255	7	10	9.0000
::F	chr9:95027120-95027351(-)$1	231	1	4	9.0000
ggg	chr3:50154405-50154634(+)$1	229	62	65	9.0000
HHH	chr12:108923815-108924059(-)$1	244	150	153	9.0000
DDD	chr20:60890985-60891251(-)$1	266	7	10	9.0000
:::	chr8:141568484-141568775(-)$1	291	35	38	9.0000
Ggg	chr6:4044104-4044354(+)$1	250	29	32	9.0000
:::	chr3:9969755-9970005(+)$1	250	102	105	9.0000
FFF	chr5:61847023-61847268(+)$1	245	52	55	9.0000
ccc	chr7:158723045-158723299(+)$1	254	59	62	9.0000
eee	chr2:172549222-172549506(+)$1	284	111	114	9.0000
hh]	chr7:128480789-128481046(+)$1	257	87	90	9.0000
abb	chr16:67271041-67271280(-)$1	239	26	29	9.0000
FFF	chr15:89857808-89858035(+)$1	227	13	16	9.0000
:::	chr20:33902390-33902639(-)$1	249	26	29	9.0000
:::	chr21:34988911-34989148(-)$1	237	78	81	9.0000
"""	chr19:54966162-54966368(+)$1	206	115	118	9.0000
c[c	chr6:31726532-31726752(+)$1	220	74	77	9.0000
dhh	chr6:20739665-20739944(+)$1	279	64	67	9.0000
:::	chr1:154207584-154207867(+)$1	283	23	26	9.0000
[bb	chr8:100160104-100160339(+)$1	235	10	13	9.0000
ooc	chr6:29589780-29590007(-)$1	227	27	30	9.0000
fff	chr6:168323435-168323657(+)$1	222	36	39	9.0000
eee	chr1:220406040-220406305(-)$1	265	18	21	9.0000
eee	chr6:90363796-90364063(-)$1	267	36	39	9.0000
BB{	chr6:35855722-35855989(-)$1	267	27	30	9.0000
CCC	chr6:30879416-30879696(+)$1	280	32	35	9.0000
ggg	chr7:100175019-100175277(-)$1	258	10	13	9.0000
===	chr19:40330825-40331068(-)$1	243	83	86	9.0000
thh	chr16:29990019-29990261(+)$1	242	43	46	9.0000
eee	chr1:19565622-19565904(-)$1	282	11	14	9.0000
EEE	chr11:3765754-3765980(-)$1	226	41	44	9.0000
FFF	chr6:31607956-31608185(-)$1	229	85	88	9.0000
qqq	chr8:41545571-41545814(-)$1	243	48	51	9.0000
ddd	chr3:50154474-50154706(+)$1	232	20	23	9.0000
::c	chr11:71174998-71175291(+)$1	293	0	3	9.0000
xxx	chr1:237025435-237025700(+)$1	265	81	84	9.0000
GGG	chr12:112743902-112744141(-)$1	239	7	10	9.0000
iii	chr6:33261711-33261928(-)$1	217	24	27	9.0000
B{F	chr9:95040380-95040662(-)$1	282	33	36	9.0000
ooo	chr13:115000385-115000703(+)$1	318	266	269	9.0000
ddd	chr21:45742749-45742970(+)$1	221	22	25	9.0000
:ee	chr13:79942858-79943165(-)$1	307	27	30	9.0000
ccm	chr5:134146818-134147073(+)$1	255	26	29	9.0000
ddd	chr15:89858412-89858621(+)$1	209	14	17	9.0000
fff	chrX:70776725-70776957(+)$1	232	66	69	9.0000
ood	chr21:47642444-47642698(-)$1	254	29	32	9.0000
mmm	chr11:293266-293537(+)$1	271	135	138	9.0000
ddd	chr14:31143027-31143299(+)$1	272	8	11	9.0000
eee	chr20:49236422-49236631(-)$1	209	45	48	9.0000
$$e	chr10:103870535-103870774(-)$1	239	8	11	9.0000
mmm	chr9:111674609-111674825(-)$1	216	5	8	9.0000
ggg	chr11:120348067-120348383(+)$1	316	79	82	9.0000
:::	chr1:155891171-155891442(-)$1	271	10	13	9.0000
2dd	chr15:28358619-28358854(-)$1	235	22	25	9.0000
ggg	chr8:41584667-41584889(-)$1	222	8	11	9.0000
FFF	chr18:52937002-52937288(-)$1	286	77	80	9.0000
DDD	chr17:64641420-64641738(+)$1	318	60	63	9.0000
FFF	chr1:38434994-38435237(-)$1	243	0	3	9.0000
^^^	chr1:12309247-12309495(+)$1	248	14	17	9.0000
ccc	chr1:12333034-12333291(+)$1	257	61	64	9.0000
EEE	chr1:236988537-236988783(+)$1	246	35	38	9.0000
FFF	chr7:100282969-100283201(-)$1	232	68	71	9.0000
ddd	chr20:31390116-31390386(+)$1	270	13	16	9.0000
###	chr19:46120786-46121049(-)$1	263	61	64	9.0000
eee	chr2:61712938-61713198(-)$1	260	16	19	9.0000
hhh	chr10:72489877-72490105(+)$1	228	210	213	9.0000
ggg	chr21:34134483-34134730(-)$1	247	16	19	9.0000
dd:	chr22:42292996-42293262(+)$1	266	45	48	9.0000
::e	chr22:43227451-43227683(-)$1	232	0	3	9.0000
:::	chr1:160201065-160201298(-)$1	233	7	10	9.0000
::E	chr22:26165991-26166238(+)$1	247	79	82	9.0000
ppp	chr1:237026653-237026898(+)$1	245	12	15	9.0000
DDD	chr7:127630981-127631209(+)$1	228	5	8	9.0000
JJJ	chr19:1219221-1219512(+)$1	291	32	35	9.0000
qqq	chr4:151719128-151719372(-)$1	244	40	43	9.0000
===	chr7:891541-891784(+)$1	243	35	38	9.0000
:FF	chr17:36873999-36874240(+)$1	241	0	3	9.0000
22b	chr10:93742355-93742618(+)$1	263	83	86	9.0000

#DB
..)	chr12:125284570-125284889(-)$1	1	23	26	9.0000
...	chr1:19455374-19455650(-)$1	1	58	61	9.0000
...	chr10:93768575-93768792(+)$1	1	0	3	9.0000
((.	chr2:44200833-44201099(-)$1	1	122	125	9.0000
)).	chr19:46352012-46352235(-)$1	1	55	58	9.0000
.((	chr19:1271346-1271566(+)$1	1	59	62	9.0000
(((	chr17:4793707-4793949(+)$1	1	7	10	9.0000
((.	chrX:153281954-153282196(-)$1	1	40	43	9.0000
)))	chr15:101972083-101972389(-)$1	1	49	52	9.0000
(((	chr1:43907871-43908128(+)$1	1	25	28	9.0000
(((	chr7:38836237-38836498(-)$1	1	0	3	9.0000
(((	chr22:18371780-18372097(-)$1	1	46	49	9.0000
((.	chr6:33381212-33381436(+)$1	1	30	33	9.0000
(.(	chr5:145502032-145502250(-)$1	1	21	24	9.0000
(((	chr6:33179036-33179306(+)$1	1	22	25	9.0000
)))	chr3:47030738-47030960(+)$1	1	73	76	9.0000
...	chr1:235420374-235420628(-)$1	1	0	3	9.0000
...	chr3:171965347-171965671(+)$1	1	23	26	9.0000
...	chr6:30877726-30877936(+)$1	1	23	26	9.0000
...	chr16:47531244-47531499(+)$1	1	7	10	9.0000
..(	chr9:95027120-95027351(-)$1	1	1	4	9.0000
)))	chr3:50154405-50154634(+)$1	1	62	65	9.0000
)))	chr12:108923815-108924059(-)$1	1	150	153	9.0000
(((	chr20:60890985-60891251(-)$1	1	7	10	9.0000
...	chr8:141568484-141568775(-)$1	1	35	38	9.0000
(((	chr6:4044104-4044354(+)$1	1	29	32	9.0000
...	chr3:9969755-9970005(+)$1	1	102	105	9.0000
(((	chr5:61847023-61847268(+)$1	1	52	55	9.0000
(((	chr7:158723045-158723299(+)$1	1	59	62	9.0000
)))	chr2:172549222-172549506(+)$1	1	111	114	9.0000
)).	chr7:128480789-128481046(+)$1	1	87	90	9.0000
(((	chr16:67271041-67271280(-)$1	1	26	29	9.0000
(((	chr15:89857808-89858035(+)$1	1	13	16	9.0000
...	chr20:33902390-33902639(-)$1	1	26	29	9.0000
...	chr21:34988911-34989148(-)$1	1	78	81	9.0000
...	chr19:54966162-54966368(+)$1	1	115	118	9.0000
(.(	chr6:31726532-31726752(+)$1	1	74	77	9.0000
(((	chr6:20739665-20739944(+)$1	1	64	67	9.0000
...	chr1:154207584-154207867(+)$1	1	23	26	9.0000
.((	chr8:100160104-100160339(+)$1	1	10	13	9.0000
..)	chr6:29589780-29590007(-)$1	1	27	30	9.0000
(((	chr6:168323435-168323657(+)$1	1	36	39	9.0000
(((	chr1:220406040-220406305(-)$1	1	18	21	9.0000
(((	chr6:90363796-90364063(-)$1	1	36	39	9.0000
((.	chr6:35855722-35855989(-)$1	1	27	30	9.0000
(((	chr6:30879416-30879696(+)$1	1	32	35	9.0000
(((	chr7:100175019-100175277(-)$1	1	10	13	9.0000
)))	chr19:40330825-40331068(-)$1	1	83	86	9.0000
.))	chr16:29990019-29990261(+)$1	1	43	46	9.0000
(((	chr1:19565622-19565904(-)$1	1	11	14	9.0000
(((	chr11:3765754-3765980(-)$1	1	41	44	9.0000
(((	chr6:31607956-31608185(-)$1	1	85	88	9.0000
...	chr8:41545571-41545814(-)$1	1	48	51	9.0000
(((	chr3:50154474-50154706(+)$1	1	20	23	9.0000
..(	chr11:71174998-71175291(+)$1	1	0	3	9.0000
...	chr1:237025435-237025700(+)$1	1	81	84	9.0000
(((	chr12:112743902-112744141(-)$1	1	7	10	9.0000
)))	chr6:33261711-33261928(-)$1	1	24	27	9.0000
(.(	chr9:95040380-95040662(-)$1	1	33	36	9.0000
...	chr13:115000385-115000703(+)$1	1	266	269	9.0000
(((	chr21:45742749-45742970(+)$1	1	22	25	9.0000
.((	chr13:79942858-79943165(-)$1	1	27	30	9.0000
((.	chr5:134146818-134147073(+)$1	1	26	29	9.0000
(((	chr15:89858412-89858621(+)$1	1	14	17	9.0000
)))	chrX:70776725-70776957(+)$1	1	66	69	9.0000
..)	chr21:47642444-47642698(-)$1	1	29	32	9.0000
...	chr11:293266-293537(+)$1	1	135	138	9.0000
(((	chr14:31143027-31143299(+)$1	1	8	11	9.0000
(((	chr20:49236422-49236631(-)$1	1	45	48	9.0000
..(	chr10:103870535-103870774(-)$1	1	8	11	9.0000
...	chr9:111674609-111674825(-)$1	1	5	8	9.0000
(((	chr11:120348067-120348383(+)$1	1	79	82	9.0000
...	chr1:155891171-155891442(-)$1	1	10	13	9.0000
.))	chr15:28358619-28358854(-)$1	1	22	25	9.0000
(((	chr8:41584667-41584889(-)$1	1	8	11	9.0000
(((	chr18:52937002-52937288(-)$1	1	77	80	9.0000
(((	chr17:64641420-64641738(+)$1	1	60	63	9.0000
(((	chr1:38434994-38435237(-)$1	1	0	3	9.0000
...	chr1:12309247-12309495(+)$1	1	14	17	9.0000
)))	chr1:12333034-12333291(+)$1	1	61	64	9.0000
(((	chr1:236988537-236988783(+)$1	1	35	38	9.0000
(((	chr7:100282969-100283201(-)$1	1	68	71	9.0000
)((	chr20:31390116-31390386(+)$1	1	13	16	9.0000
...	chr19:46120786-46121049(-)$1	1	61	64	9.0000
(((	chr2:61712938-61713198(-)$1	1	16	19	9.0000
(((	chr10:72489877-72490105(+)$1	1	210	213	9.0000
(((	chr21:34134483-34134730(-)$1	1	16	19	9.0000
)).	chr22:42292996-42293262(+)$1	1	45	48	9.0000
..(	chr22:43227451-43227683(-)$1	1	0	3	9.0000
...	chr1:160201065-160201298(-)$1	1	7	10	9.0000
..(	chr22:26165991-26166238(+)$1	1	79	82	9.0000
...	chr1:237026653-237026898(+)$1	1	12	15	9.0000
(((	chr7:127630981-127631209(+)$1	1	5	8	9.0000
(((	chr19:1219221-1219512(+)$1	1	32	35	9.0000
...	chr4:151719128-151719372(-)$1	1	40	43	9.0000
(((	chr7:891541-891784(+)$1	1	35	38	9.0000
.((	chr17:36873999-36874240(+)$1	1	0	3	9.0000
..)	chr10:93742355-93742618(+)$1	1	83	86	9.0000

#PSSM
U : 0.98	u : 0.01	
C : 1.00	
U : 1.00	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_UTR_m3_run1.nuc.txt

#NT
ACAGAAA	chr1:29444143-29444425(+)$1	282	1	8	12.8518
UCAGAAG	chr6:43147914-43148186(+)$1	272	244	251	12.3888
UCAAAAA	chr7:128409679-128409935(+)$1	256	33	40	12.6666
UCAAAAA	chr12:50156814-50157086(+)$1	272	15	22	12.6666
UGAGAAA	chr7:92240888-92241100(-)$1	212	126	133	12.8518
UCAGAAU	chr9:114984249-114984505(-)$1	256	8	15	12.4814
UCAGAAA	chr1:47843366-47843661(+)$1	295	53	60	16.6481
UCAGAUA	chr7:128142495-128142797(+)$1	302	73	80	12.2037
UCAGGAA	chr1:203711522-203711762(+)$1	240	197	204	12.9444
CCAGAAA	chr8:21863131-21863402(+)$1	271	69	76	12.8518
UCAGAAU	chr1:162493985-162494275(+)$1	290	260	267	12.4814
ucugaaa	chr17:71280055-71280306(-)$1	251	84	91	12.2037
uCAGAAA	chr3:33910397-33910718(+)$1	321	295	302	16.6481
UGAGAAA	chr5:140895428-140895665(-)$1	237	133	140	12.8518
ACAGAAA	chr7:151074308-151074606(+)$1	298	10	17	12.8518
UGAGAAA	chr11:18630834-18631089(-)$1	255	108	115	12.8518
UCAGAGA	chr17:47129130-47129368(+)$1	238	25	32	12.1111
UCACAAA	chr3:39138852-39139096(-)$1	244	75	82	12.3888
UCAGGAA	chr22:39096014-39096294(-)$1	280	208	215	12.9444
UGAGAAA	chr16:74656004-74656253(-)$1	249	55	62	12.8518
ACAGAAA	chr19:14203712-14203957(-)$1	245	206	213	12.8518
UCAUAAA	chr2:10923715-10923961(-)$1	246	2	9	12.4814
UCAGGAA	chr9:114985721-114985952(-)$1	231	50	57	12.9444
UCAGUAA	chr7:151074656-151074985(+)$1	329	269	276	12.7592
UCAGAAA	chr17:47126852-47127106(+)$1	254	176	183	16.6481
UCUGAAA	chr15:70340986-70341263(-)$1	277	44	51	12.2037
UCAUAAA	chr6:41760532-41760785(-)$1	253	177	184	12.4814
ucagaau	chr10:101472560-101472818(-)$1	258	45	52	12.4814
UCAGGAA	chr20:30252747-30252984(-)$1	237	144	151	12.9444
UCAAAAA	chr1:202910081-202910351(-)$1	270	90	97	12.6666
CCAGAAA	chr17:40555232-40555500(-)$1	268	82	89	12.8518
UCAGAAG	chr18:10551669-10551909(+)$1	240	44	51	12.3888
UAAGAAA	chr10:72183306-72183584(+)$1	278	25	32	12.7592
UCAGAAA	chr17:47126906-47127131(+)$1	225	122	129	16.6481
UCAGACA	chr1:6694820-6695073(-)$1	253	172	179	12.1111
UCAGUAA	chr3:197510090-197510354(+)$1	264	232	239	12.7592
ACAGAAA	chr12:22841848-22842100(+)$1	252	67	74	12.8518
UCAGGAA	chr19:39874904-39875127(+)$1	223	121	128	12.9444
UCAAAAA	chr5:74667948-74668192(-)$1	244	93	100	12.6666
CCAGAAA	chr17:55761858-55762101(+)$1	243	128	135	12.8518
UCAGAUA	chr5:72207175-72207431(+)$1	256	110	117	12.2037
UCAGCAA	chr3:33430335-33430574(-)$1	239	26	33	12.5740
UCAGAAA	chr6:150047521-150047753(-)$1	232	148	155	16.6481
CCAGAAA	chr3:49397089-49397321(-)$1	232	146	153	12.8518
UCUGAAA	chr1:225977405-225977651(+)$1	246	187	194	12.2037
UCAGAAA	chr16:66755652-66755897(-)$1	245	136	143	16.6481
UCAGUAA	chr3:33909082-33909403(+)$1	321	83	90	12.7592
UAAGAAA	chr12:69747562-69747840(+)$1	278	83	90	12.7592
UUAGAAA	chr17:37689403-37689660(+)$1	257	86	93	12.6666
GCAGAAA	chr15:52202194-52202420(+)$1	226	143	150	12.5740
UUAGAAA	chr1:118168140-118168413(+)$1	273	5	12	12.6666
UCAGAAA	chr5:65119505-65119784(+)$1	279	192	199	16.6481
UAAGAAA	chr6:111215335-111215608(+)$1	273	47	54	12.7592

#otherMatches

#Struct PSSM
eeennnn	chr19:41813350-41813586(+)$1	236	9	16	12.2962
:::::::	chr1:29444143-29444425(+)$1	282	1	8	12.8518
DDDD}BB	chr6:43147914-43148186(+)$1	272	244	251	12.3888
g"""ccc	chr7:128409679-128409935(+)$1	256	33	40	12.6666
ffffff:	chr12:50156814-50157086(+)$1	272	15	22	12.6666
[cccmmm	chr7:92240888-92241100(-)$1	212	126	133	12.8518
EEETTTT	chr9:114984249-114984505(-)$1	256	8	15	12.4814
""cccxx	chr1:47843366-47843661(+)$1	295	53	60	16.6481
dddd333	chr7:128142495-128142797(+)$1	302	73	80	12.2037
c]dddd:	chr1:203711522-203711762(+)$1	240	197	204	12.9444
qccc:::	chr8:21863131-21863402(+)$1	271	69	76	12.8518
oooccc2	chr1:162493985-162494275(+)$1	290	260	267	12.4814
GGGGGGG	chr17:71280055-71280306(-)$1	251	84	91	12.2037
ooddddE	chr3:33910397-33910718(+)$1	321	295	302	16.6481
d::::::	chr5:140895428-140895665(-)$1	237	133	140	12.8518
iiiiiii	chr7:151074308-151074606(+)$1	298	10	17	12.8518
}DDDDEE	chr11:18630834-18631089(-)$1	255	108	115	12.8518
pppffff	chr17:47129130-47129368(+)$1	238	25	32	12.1111
eeee333	chr3:39138852-39139096(-)$1	244	75	82	12.3888
eeeewww	chr22:39096014-39096294(-)$1	280	208	215	12.9444
Dgggggg	chr16:74656004-74656253(-)$1	249	55	62	12.8518
>>>>>>>	chr19:14203712-14203957(-)$1	245	206	213	12.8518
eeee"""	chr2:10923715-10923961(-)$1	246	2	9	12.4814
:::dddd	chr9:114985721-114985952(-)$1	231	50	57	12.9444
333iiii	chr7:151074656-151074985(+)$1	329	269	276	12.7592
]ccc:::	chr17:47126852-47127106(+)$1	254	176	183	16.6481
FFFFKKE	chr15:70340986-70341263(-)$1	277	44	51	12.2037
ppfffff	chr6:41760532-41760785(-)$1	253	177	184	12.4814
cccoooo	chr10:101472560-101472818(-)$1	258	45	52	12.4814
CCC}HHH	chr20:30252747-30252984(-)$1	237	144	151	12.9444
uffffff	chr1:202910081-202910351(-)$1	270	90	97	12.6666
eeee(((	chr17:40555232-40555500(-)$1	268	82	89	12.8518
HHHHH:e	chr18:10551669-10551909(+)$1	240	44	51	12.3888
ndddd22	chr10:72183306-72183584(+)$1	278	25	32	12.7592
]ccc:::	chr17:47126906-47127131(+)$1	225	122	129	16.6481
+++++cc	chr1:6694820-6695073(-)$1	253	172	179	12.1111
:::BB}F	chr3:197510090-197510354(+)$1	264	232	239	12.7592
dddgggg	chr12:22841848-22842100(+)$1	252	67	74	12.8518
333bb33	chr19:39874904-39875127(+)$1	223	121	128	12.9444
ee55555	chr5:74667948-74668192(-)$1	244	93	100	12.6666
EEE}A::	chr17:55761858-55762101(+)$1	243	128	135	12.8518
sssssss	chr5:72207175-72207431(+)$1	256	110	117	12.2037
ddddbbm	chr3:33430335-33430574(-)$1	239	26	33	12.5740
++=====	chr6:150047521-150047753(-)$1	232	148	155	16.6481
sssssss	chr3:49397089-49397321(-)$1	232	146	153	12.8518
qqqqqqq	chr1:225977405-225977651(+)$1	246	187	194	12.2037
ddd9999	chr16:66755652-66755897(-)$1	245	136	143	16.6481
mmmbb44	chr3:33909082-33909403(+)$1	321	83	90	12.7592
+++++++	chr12:69747562-69747840(+)$1	278	83	90	12.7592
"bb"""h	chr17:37689403-37689660(+)$1	257	86	93	12.6666
dd:::::	chr15:52202194-52202420(+)$1	226	143	150	12.5740
:::::::	chr1:118168140-118168413(+)$1	273	5	12	12.6666
dd::::e	chr5:65119505-65119784(+)$1	279	192	199	16.6481
2ccc:ee	chr6:111215335-111215608(+)$1	273	47	54	12.7592

#DB
(((....	chr19:41813350-41813586(+)$1	1	9	16	12.2962
.......	chr1:29444143-29444425(+)$1	1	1	8	12.8518
)))).))	chr6:43147914-43148186(+)$1	1	244	251	12.3888
(...(((	chr7:128409679-128409935(+)$1	1	33	40	12.6666
)))))).	chr12:50156814-50157086(+)$1	1	15	22	12.6666
.(((...	chr7:92240888-92241100(-)$1	1	126	133	12.8518
(((....	chr9:114984249-114984505(-)$1	1	8	15	12.4814
..(((..	chr1:47843366-47843661(+)$1	1	53	60	16.6481
))))...	chr7:128142495-128142797(+)$1	1	73	80	12.2037
).)))).	chr1:203711522-203711762(+)$1	1	197	204	12.9444
.)))...	chr8:21863131-21863402(+)$1	1	69	76	12.8518
...))).	chr1:162493985-162494275(+)$1	1	260	267	12.4814
)))))))	chr17:71280055-71280306(-)$1	1	84	91	12.2037
..)))))	chr3:33910397-33910718(+)$1	1	295	302	16.6481
)......	chr5:140895428-140895665(-)$1	1	133	140	12.8518
(((((((	chr7:151074308-151074606(+)$1	1	10	17	12.8518
.))))))	chr11:18630834-18631089(-)$1	1	108	115	12.8518
...))))	chr17:47129130-47129368(+)$1	1	25	32	12.1111
))))...	chr3:39138852-39139096(-)$1	1	75	82	12.3888
((((...	chr22:39096014-39096294(-)$1	1	208	215	12.9444
(((((((	chr16:74656004-74656253(-)$1	1	55	62	12.8518
.......	chr19:14203712-14203957(-)$1	1	206	213	12.8518
((((...	chr2:10923715-10923961(-)$1	1	2	9	12.4814
...((((	chr9:114985721-114985952(-)$1	1	50	57	12.9444
...))))	chr7:151074656-151074985(+)$1	1	269	276	12.7592
.)))...	chr17:47126852-47127106(+)$1	1	176	183	16.6481
((((..(	chr15:70340986-70341263(-)$1	1	44	51	12.2037
..)))))	chr6:41760532-41760785(-)$1	1	177	184	12.4814
(((....	chr10:101472560-101472818(-)$1	1	45	52	12.4814
))).)))	chr20:30252747-30252984(-)$1	1	144	151	12.9444
.))))))	chr1:202910081-202910351(-)$1	1	90	97	12.6666
((((...	chr17:40555232-40555500(-)$1	1	82	89	12.8518
(((((.(	chr18:10551669-10551909(+)$1	1	44	51	12.3888
.))))..	chr10:72183306-72183584(+)$1	1	25	32	12.7592
.)))...	chr17:47126906-47127131(+)$1	1	122	129	16.6481
.....((	chr1:6694820-6695073(-)$1	1	172	179	12.1111
...)).)	chr3:197510090-197510354(+)$1	1	232	239	12.7592
)))((((	chr12:22841848-22842100(+)$1	1	67	74	12.8518
...))..	chr19:39874904-39875127(+)$1	1	121	128	12.9444
)).....	chr5:74667948-74668192(-)$1	1	93	100	12.6666
))).)..	chr17:55761858-55762101(+)$1	1	128	135	12.8518
.......	chr5:72207175-72207431(+)$1	1	110	117	12.2037
((((((.	chr3:33430335-33430574(-)$1	1	26	33	12.5740
..(((((	chr6:150047521-150047753(-)$1	1	148	155	16.6481
.......	chr3:49397089-49397321(-)$1	1	146	153	12.8518
.......	chr1:225977405-225977651(+)$1	1	187	194	12.2037
)))....	chr16:66755652-66755897(-)$1	1	136	143	16.6481
...))..	chr3:33909082-33909403(+)$1	1	83	90	12.7592
.......	chr12:69747562-69747840(+)$1	1	83	90	12.7592
.((...(	chr17:37689403-37689660(+)$1	1	86	93	12.6666
)).....	chr15:52202194-52202420(+)$1	1	143	150	12.5740
.......	chr1:118168140-118168413(+)$1	1	5	12	12.6666
))....(	chr5:65119505-65119784(+)$1	1	192	199	16.6481
.))).((	chr6:111215335-111215608(+)$1	1	47	54	12.7592

#PSSM
U : 0.77	A : 0.07	C : 0.07	u : 0.05	G : 0.01	
C : 0.79	G : 0.07	A : 0.05	c : 0.03	U : 0.03	
A : 0.92	U : 0.03	u : 0.01	a : 0.01	
G : 0.83	A : 0.07	g : 0.03	U : 0.03	C : 0.01	
A : 0.79	G : 0.09	U : 0.05	a : 0.03	C : 0.01	
A : 0.88	U : 0.03	a : 0.03	G : 0.01	C : 0.01	
A : 0.87	G : 0.03	U : 0.03	C : 0.01	a : 0.01	u : 0.01	

#score	710.2962962962956
#seq	54
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_CDS_m3_run1.nuc.txt

#NT
AGG	chr19:7711908-7712173(+)$1	265	12	15	9.0000
AGG	chr7:127729386-127729694(+)$1	308	28	31	9.0000
AGG	chr17:40720671-40720966(+)$1	295	28	31	9.0000
agg	chr16:81697736-81697992(+)$1	256	24	27	9.0000
AGG	chr11:379265-379524(+)$1	259	13	16	9.0000
AGG	chr22:50187799-50188119(-)$1	320	23	26	9.0000
AGG	chr3:48464250-48464501(-)$1	251	6	9	9.0000
AGG	chr19:7675223-7675476(+)$1	253	11	14	9.0000
AGG	chr16:85687707-85687987(+)$1	280	48	51	9.0000
AGG	chr20:46277592-46277875(+)$1	283	44	47	9.0000
AGG	chr19:50361172-50361435(+)$1	263	18	21	9.0000
AGG	chr5:311249-311522(+)$1	273	19	22	9.0000
AGG	chr2:70451631-70451920(-)$1	289	32	35	9.0000
agg	chr1:19200947-19201224(-)$1	277	74	77	9.0000
AGG	chr5:179043856-179044097(-)$1	241	23	26	9.0000
AGG	chr3:128526189-128526501(+)$1	312	26	29	9.0000
AGG	chr16:89799742-89800010(+)$1	268	76	79	9.0000
AGG	chr8:145066257-145066509(+)$1	252	88	91	9.0000
AGG	chr20:39788605-39788854(+)$1	249	15	18	9.0000
AGG	chr9:135798753-135798996(-)$1	243	146	149	9.0000
AGG	chr11:802781-803038(-)$1	257	49	52	9.0000
AGG	chr9:139723676-139723952(+)$1	276	166	169	9.0000
AGG	chr19:35504291-35504545(+)$1	254	0	3	9.0000
AGG	chr16:89774250-89774516(-)$1	266	2	5	9.0000
AGG	chr15:75650561-75650830(-)$1	269	26	29	9.0000
AGG	chr14:24626929-24627213(+)$1	284	14	17	9.0000
AGG	chr5:140021742-140022004(+)$1	262	54	57	9.0000
AGG	chr20:30737277-30737538(+)$1	261	72	75	9.0000
AGG	chr16:89788779-89789063(+)$1	284	60	63	9.0000
AGG	chr2:128180687-128180975(+)$1	288	39	42	9.0000
AGG	chr16:722567-722809(+)$1	242	30	33	9.0000
AGG	chr19:57329968-57330227(-)$1	259	135	138	9.0000
AGG	chr17:80010989-80011241(+)$1	252	9	12	9.0000
AGG	chr3:45046638-45046916(+)$1	278	5	8	9.0000
AGG	chr21:47616059-47616320(-)$1	261	36	39	9.0000
agg	chr2:239342036-239342304(+)$1	268	3	6	9.0000
AGG	chr6:30624766-30625010(-)$1	244	98	101	9.0000
AGG	chr11:419628-419898(-)$1	270	46	49	9.0000
AGG	chr7:44621312-44621612(-)$1	300	75	78	9.0000
AGG	chr5:179260432-179260694(+)$1	262	81	84	9.0000
AGG	chr15:67473389-67473681(+)$1	292	56	59	9.0000
AGG	chr16:30081286-30081528(+)$1	242	17	20	9.0000
AGG	chr20:57569036-57569277(+)$1	241	32	35	9.0000
AGG	chr3:52326152-52326379(+)$1	227	8	11	9.0000
AGG	chr20:31608180-31608450(+)$1	270	106	109	9.0000
AGG	chr6:33381366-33381620(+)$1	254	22	25	9.0000
AGG	chr7:76955422-76955742(-)$1	320	5	8	9.0000
AGG	chr17:76817973-76818232(-)$1	259	0	3	9.0000
AGG	chr15:91524155-91524386(-)$1	231	58	61	9.0000
AGG	chr11:67810653-67810959(+)$1	306	10	13	9.0000
AGG	chr17:17127339-17127593(-)$1	254	74	77	9.0000
AGG	chr1:113241198-113241455(+)$1	257	30	33	9.0000
AGG	chr1:2234248-2234537(+)$1	289	50	53	9.0000
AGG	chr9:14788953-14789213(-)$1	260	10	13	9.0000
AGG	chr20:62331781-62332023(-)$1	242	29	32	9.0000
AGG	chr9:14857642-14857885(-)$1	243	15	18	9.0000
AGG	chr6:31917053-31917299(+)$1	246	35	38	9.0000
AGG	chr19:15233512-15233783(-)$1	271	17	20	9.0000
AGG	chr2:234366775-234367052(+)$1	277	23	26	9.0000
AGG	chr1:207958265-207958525(+)$1	260	184	187	9.0000
AGG	chr17:79974516-79974778(+)$1	262	35	38	9.0000
AGG	chr10:105420762-105421063(-)$1	301	109	112	9.0000
AGG	chrX:18942096-18942408(-)$1	312	9	12	9.0000
AGG	chr17:74308988-74309249(-)$1	261	20	23	9.0000
AGG	chr11:722530-722777(+)$1	247	21	24	9.0000
AGG	chr1:3549965-3550225(-)$1	260	37	40	9.0000
AGG	chr7:73021208-73021509(-)$1	301	35	38	9.0000
AGG	chr3:48664377-48664627(-)$1	250	140	143	9.0000
AGG	chr20:42087675-42087922(+)$1	247	14	17	9.0000
AGG	chr11:47746219-47746476(-)$1	257	41	44	9.0000
AGG	chr20:34327304-34327629(-)$1	325	49	52	9.0000
AGG	chr16:89857824-89858094(-)$1	270	174	177	9.0000
AGG	chr19:19758229-19758480(-)$1	251	13	16	9.0000
AGG	chr22:41623610-41623928(+)$1	318	6	9	9.0000
AGG	chr6:31748243-31748547(-)$1	304	63	66	9.0000
AGG	chr22:50356185-50356473(+)$1	288	13	16	9.0000
AGG	chr7:4800489-4800816(+)$1	327	140	143	9.0000
AGG	chr11:43469386-43469668(+)$1	282	48	51	9.0000
AGG	chr1:25570850-25571143(-)$1	293	227	230	9.0000
AGG	chr9:35738517-35738791(-)$1	274	20	23	9.0000
AGG	chr1:160188651-160188930(-)$1	279	29	32	9.0000
AGG	chr16:22328297-22328541(+)$1	244	50	53	9.0000
AGG	chr2:242689416-242689682(+)$1	266	85	88	9.0000
AGG	chr11:93466429-93466676(-)$1	247	3	6	9.0000
AGG	chr19:39331088-39331357(-)$1	269	5	8	9.0000
AGG	chr20:39791440-39791720(+)$1	280	16	19	9.0000
AGG	chr5:176523131-176523398(+)$1	267	52	55	9.0000
AGG	chr6:31506536-31506800(-)$1	264	82	85	9.0000
AGG	chr7:47463670-47463954(-)$1	284	15	18	9.0000
AGG	chr17:1638717-1638983(+)$1	266	36	39	9.0000
AGG	chr2:174229350-174229657(+)$1	307	8	11	9.0000
AGG	chr6:79679532-79679777(-)$1	245	15	18	9.0000
AGG	chr2:102486577-102486872(+)$1	295	29	32	9.0000
AGG	chr4:728546-728861(+)$1	315	47	50	9.0000

#otherMatches

#Struct PSSM
ddd	chr5:176522182-176522432(+)$1	250	11	14	9.0000
!bb	chr19:7711908-7712173(+)$1	265	12	15	9.0000
fff	chr7:127729386-127729694(+)$1	308	28	31	9.0000
::E	chr17:40720671-40720966(+)$1	295	28	31	9.0000
ppp	chr16:81697736-81697992(+)$1	256	24	27	9.0000
ooo	chr11:379265-379524(+)$1	259	13	16	9.0000
HHH	chr22:50187799-50188119(-)$1	320	23	26	9.0000
:::	chr3:48464250-48464501(-)$1	251	6	9	9.0000
{EE	chr19:7675223-7675476(+)$1	253	11	14	9.0000
nnn	chr16:85687707-85687987(+)$1	280	48	51	9.0000
ff2	chr20:46277592-46277875(+)$1	283	44	47	9.0000
c[d	chr19:50361172-50361435(+)$1	263	18	21	9.0000
GGG	chr5:311249-311522(+)$1	273	19	22	9.0000
DDD	chr2:70451631-70451920(-)$1	289	32	35	9.0000
ff[	chr1:19200947-19201224(-)$1	277	74	77	9.0000
EEE	chr5:179043856-179044097(-)$1	241	23	26	9.0000
DDN	chr3:128526189-128526501(+)$1	312	26	29	9.0000
ddd	chr16:89799742-89800010(+)$1	268	76	79	9.0000
eee	chr8:145066257-145066509(+)$1	252	88	91	9.0000
:a[	chr20:39788605-39788854(+)$1	249	15	18	9.0000
]ff	chr9:135798753-135798996(-)$1	243	146	149	9.0000
"cc	chr11:802781-803038(-)$1	257	49	52	9.0000
mee	chr9:139723676-139723952(+)$1	276	166	169	9.0000
:EE	chr19:35504291-35504545(+)$1	254	0	3	9.0000
JJJ	chr16:89774250-89774516(-)$1	266	2	5	9.0000
FFF	chr15:75650561-75650830(-)$1	269	26	29	9.0000
HHH	chr14:24626929-24627213(+)$1	284	14	17	9.0000
edd	chr5:140021742-140022004(+)$1	262	54	57	9.0000
mmg	chr20:30737277-30737538(+)$1	261	72	75	9.0000
44c	chr16:89788779-89789063(+)$1	284	60	63	9.0000
nng	chr2:128180687-128180975(+)$1	288	39	42	9.0000
[bb	chr16:722567-722809(+)$1	242	30	33	9.0000
]gg	chr19:57329968-57330227(-)$1	259	135	138	9.0000
{AK	chr17:80010989-80011241(+)$1	252	9	12	9.0000
FFF	chr3:45046638-45046916(+)$1	278	5	8	9.0000
lli	chr21:47616059-47616320(-)$1	261	36	39	9.0000
:ff	chr2:239342036-239342304(+)$1	268	3	6	9.0000
ddd	chr6:30624766-30625010(-)$1	244	98	101	9.0000
mmg	chr11:419628-419898(-)$1	270	46	49	9.0000
]cc	chr7:44621312-44621612(-)$1	300	75	78	9.0000
{EE	chr5:179260432-179260694(+)$1	262	81	84	9.0000
fdd	chr15:67473389-67473681(+)$1	292	56	59	9.0000
EEE	chr16:30081286-30081528(+)$1	242	17	20	9.0000
DDD	chr20:57569036-57569277(+)$1	241	32	35	9.0000
FNN	chr3:52326152-52326379(+)$1	227	8	11	9.0000
fff	chr20:31608180-31608450(+)$1	270	106	109	9.0000
E::	chr6:33381366-33381620(+)$1	254	22	25	9.0000
EEE	chr7:76955422-76955742(-)$1	320	5	8	9.0000
::H	chr17:76817973-76818232(-)$1	259	0	3	9.0000
dd2	chr15:91524155-91524386(-)$1	231	58	61	9.0000
::E	chr11:67810653-67810959(+)$1	306	10	13	9.0000
fff	chr17:17127339-17127593(-)$1	254	74	77	9.0000
6gg	chr1:113241198-113241455(+)$1	257	30	33	9.0000
:EE	chr1:2234248-2234537(+)$1	289	50	53	9.0000
:::	chr9:14788953-14789213(-)$1	260	10	13	9.0000
fff	chr20:62331781-62332023(-)$1	242	29	32	9.0000
FFF	chr9:14857642-14857885(-)$1	243	15	18	9.0000
gg2	chr6:31917053-31917299(+)$1	246	35	38	9.0000
fff	chr19:15233512-15233783(-)$1	271	17	20	9.0000
c44	chr2:234366775-234367052(+)$1	277	23	26	9.0000
lee	chr1:207958265-207958525(+)$1	260	184	187	9.0000
eee	chr17:79974516-79974778(+)$1	262	35	38	9.0000
ccc	chr10:105420762-105421063(-)$1	301	109	112	9.0000
:CC	chrX:18942096-18942408(-)$1	312	9	12	9.0000
CCG	chr17:74308988-74309249(-)$1	261	20	23	9.0000
=!!	chr11:722530-722777(+)$1	247	21	24	9.0000
&&&	chr1:3549965-3550225(-)$1	260	37	40	9.0000
ccc	chr7:73021208-73021509(-)$1	301	35	38	9.0000
mbb	chr3:48664377-48664627(-)$1	250	140	143	9.0000
KKD	chr20:42087675-42087922(+)$1	247	14	17	9.0000
:CC	chr11:47746219-47746476(-)$1	257	41	44	9.0000
bmm	chr20:34327304-34327629(-)$1	325	49	52	9.0000
3dd	chr16:89857824-89858094(-)$1	270	174	177	9.0000
::c	chr19:19758229-19758480(-)$1	251	13	16	9.0000
:::	chr22:41623610-41623928(+)$1	318	6	9	9.0000
ddd	chr6:31748243-31748547(-)$1	304	63	66	9.0000
BBD	chr22:50356185-50356473(+)$1	288	13	16	9.0000
eee	chr7:4800489-4800816(+)$1	327	140	143	9.0000
zzz	chr11:43469386-43469668(+)$1	282	48	51	9.0000
epp	chr1:25570850-25571143(-)$1	293	227	230	9.0000
!a[	chr9:35738517-35738791(-)$1	274	20	23	9.0000
EEE	chr1:160188651-160188930(-)$1	279	29	32	9.0000
:ee	chr16:22328297-22328541(+)$1	244	50	53	9.0000
55c	chr2:242689416-242689682(+)$1	266	85	88	9.0000
fff	chr11:93466429-93466676(-)$1	247	3	6	9.0000
KBB	chr19:39331088-39331357(-)$1	269	5	8	9.0000
nee	chr20:39791440-39791720(+)$1	280	16	19	9.0000
{CC	chr5:176523131-176523398(+)$1	267	52	55	9.0000
d]b	chr6:31506536-31506800(-)$1	264	82	85	9.0000
ood	chr7:47463670-47463954(-)$1	284	15	18	9.0000
hhh	chr17:1638717-1638983(+)$1	266	36	39	9.0000
uuu	chr2:174229350-174229657(+)$1	307	8	11	9.0000
===	chr6:79679532-79679777(-)$1	245	15	18	9.0000
EEE	chr2:102486577-102486872(+)$1	295	29	32	9.0000
CCC	chr4:728546-728861(+)$1	315	47	50	9.0000

#DB
(((	chr5:176522182-176522432(+)$1	1	11	14	9.0000
.((	chr19:7711908-7712173(+)$1	1	12	15	9.0000
(((	chr7:127729386-127729694(+)$1	1	28	31	9.0000
..(	chr17:40720671-40720966(+)$1	1	28	31	9.0000
...	chr16:81697736-81697992(+)$1	1	24	27	9.0000
...	chr11:379265-379524(+)$1	1	13	16	9.0000
(((	chr22:50187799-50188119(-)$1	1	23	26	9.0000
...	chr3:48464250-48464501(-)$1	1	6	9	9.0000
.((	chr19:7675223-7675476(+)$1	1	11	14	9.0000
...	chr16:85687707-85687987(+)$1	1	48	51	9.0000
)).	chr20:46277592-46277875(+)$1	1	44	47	9.0000
(.(	chr19:50361172-50361435(+)$1	1	18	21	9.0000
(((	chr5:311249-311522(+)$1	1	19	22	9.0000
(((	chr2:70451631-70451920(-)$1	1	32	35	9.0000
((.	chr1:19200947-19201224(-)$1	1	74	77	9.0000
(((	chr5:179043856-179044097(-)$1	1	23	26	9.0000
((.	chr3:128526189-128526501(+)$1	1	26	29	9.0000
(((	chr16:89799742-89800010(+)$1	1	76	79	9.0000
)))	chr8:145066257-145066509(+)$1	1	88	91	9.0000
.(.	chr20:39788605-39788854(+)$1	1	15	18	9.0000
.))	chr9:135798753-135798996(-)$1	1	146	149	9.0000
.((	chr11:802781-803038(-)$1	1	49	52	9.0000
.))	chr9:139723676-139723952(+)$1	1	166	169	9.0000
.((	chr19:35504291-35504545(+)$1	1	0	3	9.0000
(((	chr16:89774250-89774516(-)$1	1	2	5	9.0000
(((	chr15:75650561-75650830(-)$1	1	26	29	9.0000
(((	chr14:24626929-24627213(+)$1	1	14	17	9.0000
)((	chr5:140021742-140022004(+)$1	1	54	57	9.0000
..)	chr20:30737277-30737538(+)$1	1	72	75	9.0000
..)	chr16:89788779-89789063(+)$1	1	60	63	9.0000
..)	chr2:128180687-128180975(+)$1	1	39	42	9.0000
.((	chr16:722567-722809(+)$1	1	30	33	9.0000
.))	chr19:57329968-57330227(-)$1	1	135	138	9.0000
.(.	chr17:80010989-80011241(+)$1	1	9	12	9.0000
(((	chr3:45046638-45046916(+)$1	1	5	8	9.0000
..)	chr21:47616059-47616320(-)$1	1	36	39	9.0000
.((	chr2:239342036-239342304(+)$1	1	3	6	9.0000
)))	chr6:30624766-30625010(-)$1	1	98	101	9.0000
..)	chr11:419628-419898(-)$1	1	46	49	9.0000
.))	chr7:44621312-44621612(-)$1	1	75	78	9.0000
.((	chr5:179260432-179260694(+)$1	1	81	84	9.0000
)))	chr15:67473389-67473681(+)$1	1	56	59	9.0000
(((	chr16:30081286-30081528(+)$1	1	17	20	9.0000
(((	chr20:57569036-57569277(+)$1	1	32	35	9.0000
(..	chr3:52326152-52326379(+)$1	1	8	11	9.0000
)))	chr20:31608180-31608450(+)$1	1	106	109	9.0000
(..	chr6:33381366-33381620(+)$1	1	22	25	9.0000
(((	chr7:76955422-76955742(-)$1	1	5	8	9.0000
..(	chr17:76817973-76818232(-)$1	1	0	3	9.0000
)).	chr15:91524155-91524386(-)$1	1	58	61	9.0000
..(	chr11:67810653-67810959(+)$1	1	10	13	9.0000
)))	chr17:17127339-17127593(-)$1	1	74	77	9.0000
.))	chr1:113241198-113241455(+)$1	1	30	33	9.0000
.((	chr1:2234248-2234537(+)$1	1	50	53	9.0000
...	chr9:14788953-14789213(-)$1	1	10	13	9.0000
(((	chr20:62331781-62332023(-)$1	1	29	32	9.0000
(((	chr9:14857642-14857885(-)$1	1	15	18	9.0000
)).	chr6:31917053-31917299(+)$1	1	35	38	9.0000
(((	chr19:15233512-15233783(-)$1	1	17	20	9.0000
)..	chr2:234366775-234367052(+)$1	1	23	26	9.0000
.))	chr1:207958265-207958525(+)$1	1	184	187	9.0000
(((	chr17:79974516-79974778(+)$1	1	35	38	9.0000
)))	chr10:105420762-105421063(-)$1	1	109	112	9.0000
.((	chrX:18942096-18942408(-)$1	1	9	12	9.0000
(((	chr17:74308988-74309249(-)$1	1	20	23	9.0000
(..	chr11:722530-722777(+)$1	1	21	24	9.0000
...	chr1:3549965-3550225(-)$1	1	37	40	9.0000
)))	chr7:73021208-73021509(-)$1	1	35	38	9.0000
.))	chr3:48664377-48664627(-)$1	1	140	143	9.0000
..(	chr20:42087675-42087922(+)$1	1	14	17	9.0000
.((	chr11:47746219-47746476(-)$1	1	41	44	9.0000
(..	chr20:34327304-34327629(-)$1	1	49	52	9.0000
.))	chr16:89857824-89858094(-)$1	1	174	177	9.0000
..(	chr19:19758229-19758480(-)$1	1	13	16	9.0000
...	chr22:41623610-41623928(+)$1	1	6	9	9.0000
(((	chr6:31748243-31748547(-)$1	1	63	66	9.0000
(((	chr22:50356185-50356473(+)$1	1	13	16	9.0000
(((	chr7:4800489-4800816(+)$1	1	140	143	9.0000
...	chr11:43469386-43469668(+)$1	1	48	51	9.0000
(..	chr1:25570850-25571143(-)$1	1	227	230	9.0000
.(.	chr9:35738517-35738791(-)$1	1	20	23	9.0000
(((	chr1:160188651-160188930(-)$1	1	29	32	9.0000
.((	chr16:22328297-22328541(+)$1	1	50	53	9.0000
..)	chr2:242689416-242689682(+)$1	1	85	88	9.0000
(((	chr11:93466429-93466676(-)$1	1	3	6	9.0000
.((	chr19:39331088-39331357(-)$1	1	5	8	9.0000
.))	chr20:39791440-39791720(+)$1	1	16	19	9.0000
.((	chr5:176523131-176523398(+)$1	1	52	55	9.0000
).)	chr6:31506536-31506800(-)$1	1	82	85	9.0000
..)	chr7:47463670-47463954(-)$1	1	15	18	9.0000
)))	chr17:1638717-1638983(+)$1	1	36	39	9.0000
...	chr2:174229350-174229657(+)$1	1	8	11	9.0000
(((	chr6:79679532-79679777(-)$1	1	15	18	9.0000
(((	chr2:102486577-102486872(+)$1	1	29	32	9.0000
(((	chr4:728546-728861(+)$1	1	47	50	9.0000

#PSSM
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	

#score	855.0000000000002
#seq	95
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_transcript_m2_run1.nuc.txt

#NT
UUUUGUUUUGGA	chr1:62147200-62147484(-)$1	284	48	60	14.3035
uuuuguuuuuuu	chr11:27516993-27517238(-)$1	245	205	217	23.5892
CUUUGUUUAUAU	chr11:22788959-22789291(+)$1	332	104	116	14.2142
UAUUGUUUUAUA	chr8:124367196-124367589(-)$1	393	38	50	14.8392
UUUUGAAUGUUU	chr3:154029431-154029699(-)$1	268	51	63	13.4107
uauaguuuuuuu	chr6:119548065-119548341(-)$1	276	9	21	15.9107
UUUUGUUUUGUU	chr2:61508734-61509004(-)$1	270	107	119	21.4464
UCUUGAAUUUUU	chr13:73352725-73353075(-)$1	350	282	294	13.7678
UCUUAAUUUUUU	chr6:2194413-2194665(-)$1	252	86	98	13.5000
UUAUGUCUUAuu	chr2:225360369-225360622(-)$1	253	239	251	13.9464
AUUUGUCUUAUU	chr7:134672300-134672585(+)$1	285	118	130	13.8571
uuauguuuugug	chr2:152285034-152285325(+)$1	291	115	127	14.2142
CUUUGUAUAUUU	chr8:121580065-121580384(-)$1	319	200	212	13.4999
UUUUGUUUUUAU	chr2:55841786-55842043(-)$1	257	79	91	20.4642
UUAUGUUGUAUU	chr10:111895032-111895369(+)$1	337	3	15	14.5714
ucuuguuuuaug	chrY:14838808-14839129(+)$1	321	29	41	14.8392
UAAUGUUUCUUU	chr2:178372811-178373097(+)$1	286	5	17	13.4107
UUUUGAUUUUUG	chr14:31404136-31404396(-)$1	260	238	250	17.0714
UUGUGUAUUUUU	chr1:113196603-113196871(+)$1	268	72	84	15.9107
CUUUGUUGCUUU	chr6:52957578-52957859(+)$1	281	114	126	13.5892
UUUUGUUCUGUU	chr21:33065826-33066059(-)$1	233	176	188	17.5178
CAUUGUUUUAUU	chr14:38273920-38274216(+)$1	296	261	273	16.0000
UAUUGUUUUUAA	chrX:128626238-128626479(-)$1	241	68	80	13.6785
uuguguuuaauu	chr4:39711099-39711390(+)$1	291	81	93	14.3035
uuuuuuuuuuuu	chr21:34931253-34931508(+)$1	255	12	24	19.4821
UUUUGAUUGUUU	chr15:68390617-68390897(+)$1	280	252	264	17.2500
UAUUGUUUGUCU	chr6:47500964-47501253(+)$1	289	74	86	13.9464
UGUUGUUGUUUG	chr1:171554588-171554924(+)$1	336	29	41	13.1428
cuuuguuuuuuu	chr4:107180584-107180853(-)$1	269	173	185	20.8214
CAGUGUUUUUUU	chr5:95278348-95278606(-)$1	258	115	127	14.1250
UUCUGAUUUCUU	chr2:97878587-97878911(+)$1	324	179	191	14.0357
uuuuauuguuuu	chr1:93298693-93298934(+)$1	241	40	52	15.9999
CUUUGUUUUGUG	chr2:32678310-32678616(+)$1	306	116	128	15.0178
uuuugaguucuu	chr1:67880480-67880786(-)$1	306	140	152	13.8571
GUUUUUUUUUUU	chr3:78695519-78695843(-)$1	324	73	85	15.9107
UGUUGUUUAAUU	chr1:40679447-40679745(+)$1	298	194	206	14.8392
UUUUUUUUUCUU	chr7:148514170-148514435(-)$1	265	244	256	16.8035
uguuguuguugu	chrX:132936243-132936481(-)$1	238	77	89	13.5892
UUUUGCUUUUGU	chr22:28293169-28293420(-)$1	251	29	41	16.9821
uuauguuauguu	chr3:73067476-73067785(+)$1	309	83	95	13.8571
UUUUGUUGUGAU	chr12:24102270-24102563(-)$1	293	210	222	14.8392
UUAUGUUUAUUU	chr10:5005705-5006001(+)$1	296	202	214	16.5357
uuuuguuugugu	chr3:9450262-9450556(+)$1	294	222	234	16.8928
GUUUGAUCUUUU	chr2:109357319-109357599(+)$1	280	68	80	13.2321
UAUUGCUUUGUU	chr4:73958037-73958346(-)$1	309	129	141	15.1964
UCUUGUUUUACU	chr6:64374222-64374564(+)$1	342	55	67	15.1964
CUUUAUUGUUUU	chr8:17427016-17427271(+)$1	255	29	41	13.2321
UUUUGUUUUAAU	chr9:86586274-86586549(-)$1	275	183	195	18.4999
CUUUGCUUUUCU	chr13:100891170-100891437(+)$1	267	107	119	14.1250
UUUUCUUUUUCU	chr21:40668347-40668608(-)$1	261	147	159	16.0000
CUUUGAUUUUAU	chr5:131052043-131052311(-)$1	268	65	77	14.8392
uuuuguuuuugu	chr7:92243401-92243650(-)$1	249	155	167	20.3749
CUUUGUUUUGUU	chr2:183885727-183885992(-)$1	265	227	239	18.6785
UUUUGCUUUUUG	chr7:26238640-26238890(-)$1	250	95	107	16.5357
UCUUGUUUUAUU	chr21:16402779-16403020(-)$1	241	205	217	18.4999

#otherMatches

#Struct PSSM
d333a]gggggg	chr13:41564163-41564476(-)$1	313	218	230	13.4107
e!!bb[iiiiii	chr1:62147200-62147484(-)$1	284	48	60	14.3035
HHHHHH~~~~FF	chr11:27516993-27517238(-)$1	245	205	217	23.5892
ggggggiiiiii	chr11:22788959-22789291(+)$1	332	104	116	14.2142
HHHHHHHKKDDD	chr8:124367196-124367589(-)$1	393	38	50	14.8392
ee[bb!!eeeee	chr3:154029431-154029699(-)$1	268	51	63	13.4107
hhhttttttttt	chr6:119548065-119548341(-)$1	276	9	21	15.9107
:::ggggggg&&	chr2:61508734-61509004(-)$1	270	107	119	21.4464
ppppffffff44	chr13:73352725-73353075(-)$1	350	282	294	13.7678
KKJJJJJJJJJJ	chr6:2194413-2194665(-)$1	252	86	98	13.5000
ZEEEEE::::::	chr2:225360369-225360622(-)$1	253	239	251	13.9464
GKKCCCLLLFFF	chr7:134672300-134672585(+)$1	285	118	130	13.8571
e####ggggggg	chr2:152285034-152285325(+)$1	291	115	127	14.2142
NNNNNBB{EEEE	chr8:121580065-121580384(-)$1	319	200	212	13.4999
fffff[eeeee[	chr2:55841786-55842043(-)$1	257	79	91	20.4642
:hhhhhhhhlll	chr10:111895032-111895369(+)$1	337	3	15	14.5714
JGGGGGGGGGGG	chrY:14838808-14839129(+)$1	321	29	41	14.8392
::==========	chr2:178372811-178373097(+)$1	286	5	17	13.4107
FFFFFFFFFFF}	chr14:31404136-31404396(-)$1	260	238	250	17.0714
dddd333bb]==	chr1:113196603-113196871(+)$1	268	72	84	15.9107
rrrdddd333hh	chr6:52957578-52957859(+)$1	281	114	126	13.5892
2ffffff99999	chr21:33065826-33066059(-)$1	233	176	188	17.5178
hhh[cccsssss	chr14:38273920-38274216(+)$1	296	261	273	16.0000
gssssssssssg	chrX:128626238-128626479(-)$1	241	68	80	13.6785
GGGGGGG:::::	chr4:39711099-39711390(+)$1	291	81	93	14.3035
DDD:::::::::	chr21:34931253-34931508(+)$1	255	12	24	19.4821
"eeeeeoooooo	chr15:68390617-68390897(+)$1	280	252	264	17.2500
eeeeexxxxxxx	chr6:47500964-47501253(+)$1	289	74	86	13.9464
mmmmeeeee:HH	chr1:171554588-171554924(+)$1	336	29	41	13.1428
c[gggggggvvv	chr4:107180584-107180853(-)$1	269	173	185	20.8214
d:::::::::hh	chr5:95278348-95278606(-)$1	258	115	127	14.1250
nnnneeeee:::	chr2:97878587-97878911(+)$1	324	179	191	14.0357
::::::DDDDLL	chr1:93298693-93298934(+)$1	241	40	52	15.9999
5555hhhhhhhh	chr2:32678310-32678616(+)$1	306	116	128	15.0178
::ffffff&&&&	chr1:67880480-67880786(-)$1	306	140	152	13.8571
^^^^^^^^ffff	chr3:78695519-78695843(-)$1	324	73	85	15.9107
J}BB}DDDD}BB	chr1:40679447-40679745(+)$1	298	194	206	14.8392
oooeeeee::CC	chr7:148514170-148514435(-)$1	265	244	256	16.8035
22dddd22eeee	chrX:132936243-132936481(-)$1	238	77	89	13.5892
gg!!bbmmmmbb	chr22:28293169-28293420(-)$1	251	29	41	16.9821
c[ccc[dddd[d	chr3:73067476-73067785(+)$1	309	83	95	13.8571
rrrrdddd]fff	chr12:24102270-24102563(-)$1	293	210	222	14.8392
###ccc[bb[cc	chr10:5005705-5006001(+)$1	296	202	214	16.5357
ZZGGGGGGGZZZ	chr3:9450262-9450556(+)$1	294	222	234	16.8928
eetttttttttt	chr2:109357319-109357599(+)$1	280	68	80	13.2321
gggggggggggg	chr4:73958037-73958346(-)$1	309	129	141	15.1964
dddd]eeeee]e	chr6:64374222-64374564(+)$1	342	55	67	15.1964
cooooooccc:h	chr8:17427016-17427271(+)$1	255	29	41	13.2321
!eeeeevvvvvv	chr9:86586274-86586549(-)$1	275	183	195	18.4999
###bb[eeeeem	chr13:100891170-100891437(+)$1	267	107	119	14.1250
zzzzzzzzzbb]	chr21:40668347-40668608(-)$1	261	147	159	16.0000
d:::::::::dd	chr5:131052043-131052311(-)$1	268	65	77	14.8392
::::gggggggx	chr7:92243401-92243650(-)$1	249	155	167	20.3749
ffffffpppppp	chr2:183885727-183885992(-)$1	265	227	239	18.6785
===[bbyyyyyy	chr7:26238640-26238890(-)$1	250	95	107	16.5357
cc]ffffff]dd	chr21:16402779-16403020(-)$1	241	205	217	18.4999

#DB
)...).))))))	chr13:41564163-41564476(-)$1	1	218	230	13.4107
(..((.((((((	chr1:62147200-62147484(-)$1	1	48	60	14.3035
))))))....))	chr11:27516993-27517238(-)$1	1	205	217	23.5892
))))))((((((	chr11:22788959-22789291(+)$1	1	104	116	14.2142
(((((((..(((	chr8:124367196-124367589(-)$1	1	38	50	14.8392
((.((..(((((	chr3:154029431-154029699(-)$1	1	51	63	13.4107
(((.........	chr6:119548065-119548341(-)$1	1	9	21	15.9107
...(((((((..	chr2:61508734-61509004(-)$1	1	107	119	21.4464
....))))))..	chr13:73352725-73353075(-)$1	1	282	294	13.7678
..((((((((((	chr6:2194413-2194665(-)$1	1	86	98	13.5000
.)))))......	chr2:225360369-225360622(-)$1	1	239	251	13.9464
(..(((...(((	chr7:134672300-134672585(+)$1	1	118	130	13.8571
(....(((((((	chr2:152285034-152285325(+)$1	1	115	127	14.2142
.....((.((((	chr8:121580065-121580384(-)$1	1	200	212	13.4999
(((((.(((((.	chr2:55841786-55842043(-)$1	1	79	91	20.4642
.((((((((...	chr10:111895032-111895369(+)$1	1	3	15	14.5714
((((((((((((	chrY:14838808-14839129(+)$1	1	29	41	14.8392
..((((((((((	chr2:178372811-178373097(+)$1	1	5	17	13.4107
))))))))))).	chr14:31404136-31404396(-)$1	1	238	250	17.0714
))))...)).))	chr1:113196603-113196871(+)$1	1	72	84	15.9107
...))))...))	chr6:52957578-52957859(+)$1	1	114	126	13.5892
.)))))).....	chr21:33065826-33066059(-)$1	1	176	188	17.5178
(((.(((.....	chr14:38273920-38274216(+)$1	1	261	273	16.0000
(..........)	chrX:128626238-128626479(-)$1	1	68	80	13.6785
(((((((.....	chr4:39711099-39711390(+)$1	1	81	93	14.3035
(((.........	chr21:34931253-34931508(+)$1	1	12	24	19.4821
.(((((......	chr15:68390617-68390897(+)$1	1	252	264	17.2500
(((((.......	chr6:47500964-47501253(+)$1	1	74	86	13.9464
....))))).((	chr1:171554588-171554924(+)$1	1	29	41	13.1428
(.(((((((...	chr4:107180584-107180853(-)$1	1	173	185	20.8214
).........((	chr5:95278348-95278606(-)$1	1	115	127	14.1250
....)))))...	chr2:97878587-97878911(+)$1	1	179	191	14.0357
......((((..	chr1:93298693-93298934(+)$1	1	40	52	15.9999
....))))))))	chr2:32678310-32678616(+)$1	1	116	128	15.0178
..((((((....	chr1:67880480-67880786(-)$1	1	140	152	13.8571
........))))	chr3:78695519-78695843(-)$1	1	73	85	15.9107
).)).)))).))	chr1:40679447-40679745(+)$1	1	194	206	14.8392
...)))))..))	chr7:148514170-148514435(-)$1	1	244	256	16.8035
..))))..))))	chrX:132936243-132936481(-)$1	1	77	89	13.5892
((..((....))	chr22:28293169-28293420(-)$1	1	29	41	16.9821
(.(((.((((.(	chr3:73067476-73067785(+)$1	1	83	95	13.8571
....)))).)))	chr12:24102270-24102563(-)$1	1	210	222	14.8392
...(((.((.((	chr10:5005705-5006001(+)$1	1	202	214	16.5357
..)))))))...	chr3:9450262-9450556(+)$1	1	222	234	16.8928
((..........	chr2:109357319-109357599(+)$1	1	68	80	13.2321
))))))))))))	chr4:73958037-73958346(-)$1	1	129	141	15.1964
)))).))))).)	chr6:64374222-64374564(+)$1	1	55	67	15.1964
(......))).(	chr8:17427016-17427271(+)$1	1	29	41	13.2321
.(((((......	chr9:86586274-86586549(-)$1	1	183	195	18.4999
...((.(((((.	chr13:100891170-100891437(+)$1	1	107	119	14.1250
.........)).	chr21:40668347-40668608(-)$1	1	147	159	16.0000
).........((	chr5:131052043-131052311(-)$1	1	65	77	14.8392
....(((((((.	chr7:92243401-92243650(-)$1	1	155	167	20.3749
((((((......	chr2:183885727-183885992(-)$1	1	227	239	18.6785
(((.((......	chr7:26238640-26238890(-)$1	1	95	107	16.5357
)).)))))).))	chr21:16402779-16403020(-)$1	1	205	217	18.4999

#PSSM
U : 0.53	u : 0.21	C : 0.17	G : 0.03	A : 0.01	c : 0.01	
U : 0.53	u : 0.17	A : 0.12	C : 0.07	G : 0.03	a : 0.01	c : 0.01	g : 0.01	
U : 0.64	u : 0.17	A : 0.07	a : 0.03	G : 0.03	g : 0.01	C : 0.01	
U : 0.76	u : 0.21	a : 0.01	
G : 0.67	g : 0.19	A : 0.03	U : 0.03	u : 0.01	a : 0.01	C : 0.01	
U : 0.53	u : 0.21	A : 0.16	C : 0.07	a : 0.01	
U : 0.64	u : 0.21	A : 0.08	C : 0.03	g : 0.01	
U : 0.64	u : 0.17	G : 0.08	C : 0.03	g : 0.03	a : 0.01	
U : 0.58	u : 0.19	G : 0.07	A : 0.07	C : 0.03	a : 0.01	g : 0.01	
U : 0.44	A : 0.16	u : 0.14	G : 0.12	g : 0.03	a : 0.03	C : 0.03	c : 0.01	
U : 0.53	u : 0.19	A : 0.10	C : 0.07	g : 0.05	G : 0.03	
U : 0.62	u : 0.21	G : 0.07	A : 0.05	g : 0.03	

#score	877.6071428571427
#seq	56
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_CDS_m1_run1.nuc.txt

#NT
GCAG	chr15:79215232-79215521(-)$1	289	98	102	12.0000
GCAG	chr6:31807266-31807549(+)$1	283	133	137	12.0000
GCAG	chr17:80015705-80016016(-)$1	311	9	13	12.0000
GCAG	chr9:127623684-127623935(-)$1	251	42	46	12.0000
GCAG	chr19:5691250-5691521(+)$1	271	6	10	12.0000
gcAG	chr11:46404055-46404300(+)$1	245	50	54	12.0000
GCAG	chr2:219679548-219679857(+)$1	309	21	25	12.0000
GCAG	chr17:79679329-79679640(+)$1	311	130	134	12.0000
GCAG	chr16:29815216-29815485(+)$1	269	109	113	12.0000
GCAG	chr20:60884721-60884983(-)$1	262	132	136	12.0000
GCAG	chr1:20978772-20979059(-)$1	287	1	5	12.0000
GCAG	chr12:56553755-56554032(+)$1	277	49	53	12.0000
GCAG	chr20:60884943-60885191(-)$1	248	78	82	12.0000
GCAG	chr3:52327034-52327348(+)$1	314	164	168	12.0000
GCAG	chr16:30904432-30904706(-)$1	274	11	15	12.0000
GCAG	chr19:54704927-54705170(+)$1	243	53	57	12.0000
GCAG	chr7:150035604-150035883(-)$1	279	49	53	12.0000
GCAG	chr12:57606121-57606369(+)$1	248	72	76	12.0000
GCAG	chr11:67379486-67379775(+)$1	289	32	36	12.0000
GCAG	chr11:1977500-1977794(+)$1	294	46	50	12.0000
GCAG	chr7:43906316-43906645(-)$1	329	10	14	12.0000
GCAG	chr14:74946798-74947090(-)$1	292	251	255	12.0000
GCAG	chr11:61557147-61557449(-)$1	302	266	270	12.0000
GCAG	chr17:79994766-79994988(-)$1	222	163	167	12.0000
GCAG	chr17:1554302-1554581(-)$1	279	103	107	12.0000
GCAG	chr6:143816710-143816989(-)$1	279	149	153	12.0000
GCAG	chr14:24707350-24707596(+)$1	246	97	101	12.0000
GCAG	chr12:9220678-9220884(-)$1	206	97	101	12.0000
GCAG	chr12:56511169-56511401(+)$1	232	123	127	12.0000
GCAG	chr16:31202209-31202486(+)$1	277	104	108	12.0000
GCAG	chr5:150404908-150405127(+)$1	219	75	79	12.0000
GCAG	chr1:161192686-161192936(-)$1	250	10	14	12.0000
GCAG	chr11:33731428-33731778(-)$1	350	80	84	12.0000
GCAG	chr2:217069814-217070095(+)$1	281	41	45	12.0000
GCAG	chr20:34288618-34288861(+)$1	243	39	43	12.0000
GCAG	chr1:153604077-153604395(+)$1	318	240	244	12.0000
GCAG	chr9:139735160-139735511(+)$1	351	74	78	12.0000
GCAG	chr10:96997570-96997810(-)$1	240	133	137	12.0000
GCAG	chr19:56180883-56181147(+)$1	264	98	102	12.0000
GCAG	chr15:72636166-72636582(-)$1	416	97	101	12.0000
GCAG	chr6:31698490-31698800(-)$1	310	282	286	12.0000
GCAG	chr2:98262541-98262753(+)$1	212	49	53	12.0000
GCAG	chr15:64448138-64448366(-)$1	228	91	95	12.0000
GCAG	chr9:116822404-116822638(-)$1	234	175	179	12.0000
GCAG	chr15:44085950-44086291(+)$1	341	150	154	12.0000
GCAG	chr17:42429928-42430150(+)$1	222	151	155	12.0000
GCAG	chr19:45452363-45452636(+)$1	273	74	78	12.0000
GCAG	chr12:56119545-56119788(-)$1	243	21	25	12.0000
GCAG	chr1:44443555-44443801(+)$1	246	93	97	12.0000
GCAG	chr16:2011685-2011939(+)$1	254	70	74	12.0000
GCAG	chr14:105954402-105954698(+)$1	296	10	14	12.0000
GCAG	chr17:74383483-74383736(+)$1	253	43	47	12.0000
GCAG	chr20:30156879-30157176(+)$1	297	74	78	12.0000
GCAG	chr19:2235828-2236096(-)$1	268	103	107	12.0000
GCAG	chr1:54683801-54684054(+)$1	253	12	16	12.0000
GCAG	chr19:45452315-45452552(+)$1	237	122	126	12.0000
GCAG	chr14:24113939-24114160(+)$1	221	146	150	12.0000
gcag	chr17:19481208-19481463(+)$1	255	128	132	12.0000
GCAG	chr12:98994859-98995160(+)$1	301	161	165	12.0000
GCAG	chr2:98264365-98264664(+)$1	299	190	194	12.0000
GCAG	chr1:161192162-161192380(-)$1	218	92	96	12.0000
GCAG	chr3:184052587-184052823(+)$1	236	21	25	12.0000
GCAG	chr8:27457194-27457428(-)$1	234	47	51	12.0000
GCAG	chr20:25206971-25207227(+)$1	256	134	138	12.0000
GCAG	chr2:220371407-220371662(+)$1	255	8	12	12.0000
GCAG	chr20:34287567-34287785(+)$1	218	145	149	12.0000
GCAG	chr20:34214094-34214340(-)$1	246	33	37	12.0000
GCAG	chr14:105219426-105219762(+)$1	336	38	42	12.0000
GCAG	chr3:49395414-49395811(-)$1	397	285	289	12.0000
GCAG	chr19:4668506-4668740(-)$1	234	201	205	12.0000
GCAG	chr17:18148203-18148601(-)$1	398	89	93	12.0000
GCAG	chr20:2444302-2444527(-)$1	225	34	38	12.0000
GCAG	chr14:50052567-50052803(-)$1	236	146	150	12.0000
GCAG	chr1:20980052-20980276(-)$1	224	5	9	12.0000
GCAG	chr12:6979336-6979545(+)$1	209	43	47	12.0000
GCAG	chr12:9220684-9220899(-)$1	215	112	116	12.0000
GCAG	chr3:49158580-49158829(-)$1	249	81	85	12.0000
GCAG	chr1:161192664-161192886(-)$1	222	42	46	12.0000
GCAG	chr14:23033906-23034137(-)$1	231	140	144	12.0000
GCAG	chr19:54705011-54705254(+)$1	243	12	16	12.0000

#otherMatches

#Struct PSSM
bb[e	chr6:33385157-33385422(-)$1	265	115	119	12.0000
eeee	chr15:79215232-79215521(-)$1	289	98	102	12.0000
IYYB	chr6:31807266-31807549(+)$1	283	133	137	12.0000
GG{C	chr17:80015705-80016016(-)$1	311	9	13	12.0000
"eee	chr9:127623684-127623935(-)$1	251	42	46	12.0000
mmmm	chr19:5691250-5691521(+)$1	271	6	10	12.0000
clll	chr11:46404055-46404300(+)$1	245	50	54	12.0000
DDDD	chr2:219679548-219679857(+)$1	309	21	25	12.0000
EEEE	chr17:79679329-79679640(+)$1	311	130	134	12.0000
:CCC	chr16:29815216-29815485(+)$1	269	109	113	12.0000
nnnn	chr20:60884721-60884983(-)$1	262	132	136	12.0000
::::	chr1:20978772-20979059(-)$1	287	1	5	12.0000
CCOO	chr12:56553755-56554032(+)$1	277	49	53	12.0000
dddd	chr20:60884943-60885191(-)$1	248	78	82	12.0000
b[dd	chr3:52327034-52327348(+)$1	314	164	168	12.0000
D{DD	chr16:30904432-30904706(-)$1	274	11	15	12.0000
CCCC	chr19:54704927-54705170(+)$1	243	53	57	12.0000
C{GG	chr7:150035604-150035883(-)$1	279	49	53	12.0000
DDDD	chr12:57606121-57606369(+)$1	248	72	76	12.0000
bb[b	chr11:67379486-67379775(+)$1	289	32	36	12.0000
cc::	chr11:1977500-1977794(+)$1	294	46	50	12.0000
GGGG	chr7:43906316-43906645(-)$1	329	10	14	12.0000
eeee	chr14:74946798-74947090(-)$1	292	251	255	12.0000
YYDD	chr11:61557147-61557449(-)$1	302	266	270	12.0000
mmee	chr17:79994766-79994988(-)$1	222	163	167	12.0000
::::	chr17:1554302-1554581(-)$1	279	103	107	12.0000
}CCC	chr6:143816710-143816989(-)$1	279	149	153	12.0000
d]ee	chr14:24707350-24707596(+)$1	246	97	101	12.0000
55ee	chr12:9220678-9220884(-)$1	206	97	101	12.0000
!!bb	chr12:56511169-56511401(+)$1	232	123	127	12.0000
bb::	chr16:31202209-31202486(+)$1	277	104	108	12.0000
:eee	chr5:150404908-150405127(+)$1	219	75	79	12.0000
MMMJ	chr1:161192686-161192936(-)$1	250	10	14	12.0000
ccmm	chr11:33731428-33731778(-)$1	350	80	84	12.0000
b]bb	chr2:217069814-217070095(+)$1	281	41	45	12.0000
##cc	chr20:34288618-34288861(+)$1	243	39	43	12.0000
dddd	chr1:153604077-153604395(+)$1	318	240	244	12.0000
gggg	chr9:139735160-139735511(+)$1	351	74	78	12.0000
dddd	chr10:96997570-96997810(-)$1	240	133	137	12.0000
c[bb	chr19:56180883-56181147(+)$1	264	98	102	12.0000
A{HH	chr15:72636166-72636582(-)$1	416	97	101	12.0000
C}EE	chr6:31698490-31698800(-)$1	310	282	286	12.0000
g!!e	chr2:98262541-98262753(+)$1	212	49	53	12.0000
eee2	chr15:64448138-64448366(-)$1	228	91	95	12.0000
FFFF	chr9:116822404-116822638(-)$1	234	175	179	12.0000
cc33	chr15:44085950-44086291(+)$1	341	150	154	12.0000
hhhh	chr17:42429928-42430150(+)$1	222	151	155	12.0000
Iddd	chr19:45452363-45452636(+)$1	273	74	78	12.0000
iii#	chr12:56119545-56119788(-)$1	243	21	25	12.0000
dddd	chr1:44443555-44443801(+)$1	246	93	97	12.0000
gggg	chr16:2011685-2011939(+)$1	254	70	74	12.0000
dddd	chr14:105954402-105954698(+)$1	296	10	14	12.0000
ffff	chr17:74383483-74383736(+)$1	253	43	47	12.0000
====	chr20:30156879-30157176(+)$1	297	74	78	12.0000
gggg	chr19:2235828-2236096(-)$1	268	103	107	12.0000
ffff	chr1:54683801-54684054(+)$1	253	12	16	12.0000
Iddd	chr19:45452315-45452552(+)$1	237	122	126	12.0000
ee]h	chr14:24113939-24114160(+)$1	221	146	150	12.0000
dddd	chr17:19481208-19481463(+)$1	255	128	132	12.0000
hhhh	chr12:98994859-98995160(+)$1	301	161	165	12.0000
]ddd	chr2:98264365-98264664(+)$1	299	190	194	12.0000
:eee	chr1:161192162-161192380(-)$1	218	92	96	12.0000
:::e	chr3:184052587-184052823(+)$1	236	21	25	12.0000
d]bb	chr8:27457194-27457428(-)$1	234	47	51	12.0000
eemm	chr20:25206971-25207227(+)$1	256	134	138	12.0000
eeee	chr2:220371407-220371662(+)$1	255	8	12	12.0000
rrrr	chr20:34287567-34287785(+)$1	218	145	149	12.0000
c22e	chr20:34214094-34214340(-)$1	246	33	37	12.0000
DD:f	chr14:105219426-105219762(+)$1	336	38	42	12.0000
Gbb[	chr3:49395414-49395811(-)$1	397	285	289	12.0000
nnnn	chr19:4668506-4668740(-)$1	234	201	205	12.0000
gggg	chr17:18148203-18148601(-)$1	398	89	93	12.0000
eeee	chr20:2444302-2444527(-)$1	225	34	38	12.0000
mmme	chr14:50052567-50052803(-)$1	236	146	150	12.0000
:::D	chr1:20980052-20980276(-)$1	224	5	9	12.0000
hhhh	chr12:6979336-6979545(+)$1	209	43	47	12.0000
55ee	chr12:9220684-9220899(-)$1	215	112	116	12.0000
Bfff	chr3:49158580-49158829(-)$1	249	81	85	12.0000
""gg	chr1:161192664-161192886(-)$1	222	42	46	12.0000
ffff	chr14:23033906-23034137(-)$1	231	140	144	12.0000
bbmm	chr19:54705011-54705254(+)$1	243	12	16	12.0000

#DB
((.(	chr6:33385157-33385422(-)$1	1	115	119	12.0000
((((	chr15:79215232-79215521(-)$1	1	98	102	12.0000
)..)	chr6:31807266-31807549(+)$1	1	133	137	12.0000
((.(	chr17:80015705-80016016(-)$1	1	9	13	12.0000
.(((	chr9:127623684-127623935(-)$1	1	42	46	12.0000
....	chr19:5691250-5691521(+)$1	1	6	10	12.0000
(...	chr11:46404055-46404300(+)$1	1	50	54	12.0000
((((	chr2:219679548-219679857(+)$1	1	21	25	12.0000
((((	chr17:79679329-79679640(+)$1	1	130	134	12.0000
.(((	chr16:29815216-29815485(+)$1	1	109	113	12.0000
....	chr20:60884721-60884983(-)$1	1	132	136	12.0000
....	chr1:20978772-20979059(-)$1	1	1	5	12.0000
((..	chr12:56553755-56554032(+)$1	1	49	53	12.0000
((((	chr20:60884943-60885191(-)$1	1	78	82	12.0000
(.((	chr3:52327034-52327348(+)$1	1	164	168	12.0000
(.((	chr16:30904432-30904706(-)$1	1	11	15	12.0000
((((	chr19:54704927-54705170(+)$1	1	53	57	12.0000
(.((	chr7:150035604-150035883(-)$1	1	49	53	12.0000
((((	chr12:57606121-57606369(+)$1	1	72	76	12.0000
((.(	chr11:67379486-67379775(+)$1	1	32	36	12.0000
))..	chr11:1977500-1977794(+)$1	1	46	50	12.0000
((((	chr7:43906316-43906645(-)$1	1	10	14	12.0000
))))	chr14:74946798-74947090(-)$1	1	251	255	12.0000
..))	chr11:61557147-61557449(-)$1	1	266	270	12.0000
..))	chr17:79994766-79994988(-)$1	1	163	167	12.0000
....	chr17:1554302-1554581(-)$1	1	103	107	12.0000
.)))	chr6:143816710-143816989(-)$1	1	149	153	12.0000
).))	chr14:24707350-24707596(+)$1	1	97	101	12.0000
..))	chr12:9220678-9220884(-)$1	1	97	101	12.0000
..((	chr12:56511169-56511401(+)$1	1	123	127	12.0000
))..	chr16:31202209-31202486(+)$1	1	104	108	12.0000
.(((	chr5:150404908-150405127(+)$1	1	75	79	12.0000
...(	chr1:161192686-161192936(-)$1	1	10	14	12.0000
((..	chr11:33731428-33731778(-)$1	1	80	84	12.0000
).))	chr2:217069814-217070095(+)$1	1	41	45	12.0000
..((	chr20:34288618-34288861(+)$1	1	39	43	12.0000
))))	chr1:153604077-153604395(+)$1	1	240	244	12.0000
((((	chr9:139735160-139735511(+)$1	1	74	78	12.0000
))))	chr10:96997570-96997810(-)$1	1	133	137	12.0000
(.((	chr19:56180883-56181147(+)$1	1	98	102	12.0000
(.((	chr15:72636166-72636582(-)$1	1	97	101	12.0000
).))	chr6:31698490-31698800(-)$1	1	282	286	12.0000
(..(	chr2:98262541-98262753(+)$1	1	49	53	12.0000
))).	chr15:64448138-64448366(-)$1	1	91	95	12.0000
))))	chr9:116822404-116822638(-)$1	1	175	179	12.0000
))..	chr15:44085950-44086291(+)$1	1	150	154	12.0000
((((	chr17:42429928-42430150(+)$1	1	151	155	12.0000
)(((	chr19:45452363-45452636(+)$1	1	74	78	12.0000
(((.	chr12:56119545-56119788(-)$1	1	21	25	12.0000
))))	chr1:44443555-44443801(+)$1	1	93	97	12.0000
))))	chr16:2011685-2011939(+)$1	1	70	74	12.0000
((((	chr14:105954402-105954698(+)$1	1	10	14	12.0000
((((	chr17:74383483-74383736(+)$1	1	43	47	12.0000
))))	chr20:30156879-30157176(+)$1	1	74	78	12.0000
))))	chr19:2235828-2236096(-)$1	1	103	107	12.0000
((((	chr1:54683801-54684054(+)$1	1	12	16	12.0000
)(((	chr19:45452315-45452552(+)$1	1	122	126	12.0000
)).)	chr14:24113939-24114160(+)$1	1	146	150	12.0000
))))	chr17:19481208-19481463(+)$1	1	128	132	12.0000
))))	chr12:98994859-98995160(+)$1	1	161	165	12.0000
.)))	chr2:98264365-98264664(+)$1	1	190	194	12.0000
.(((	chr1:161192162-161192380(-)$1	1	92	96	12.0000
...(	chr3:184052587-184052823(+)$1	1	21	25	12.0000
).))	chr8:27457194-27457428(-)$1	1	47	51	12.0000
((..	chr20:25206971-25207227(+)$1	1	134	138	12.0000
((((	chr2:220371407-220371662(+)$1	1	8	12	12.0000
....	chr20:34287567-34287785(+)$1	1	145	149	12.0000
)..)	chr20:34214094-34214340(-)$1	1	33	37	12.0000
((.(	chr14:105219426-105219762(+)$1	1	38	42	12.0000
(((.	chr3:49395414-49395811(-)$1	1	285	289	12.0000
....	chr19:4668506-4668740(-)$1	1	201	205	12.0000
((((	chr17:18148203-18148601(-)$1	1	89	93	12.0000
((((	chr20:2444302-2444527(-)$1	1	34	38	12.0000
...)	chr14:50052567-50052803(-)$1	1	146	150	12.0000
...(	chr1:20980052-20980276(-)$1	1	5	9	12.0000
((((	chr12:6979336-6979545(+)$1	1	43	47	12.0000
..))	chr12:9220684-9220899(-)$1	1	112	116	12.0000
((((	chr3:49158580-49158829(-)$1	1	81	85	12.0000
..((	chr1:161192664-161192886(-)$1	1	42	46	12.0000
((((	chr14:23033906-23034137(-)$1	1	140	144	12.0000
((..	chr19:54705011-54705254(+)$1	1	12	16	12.0000

#PSSM
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_transcript_m3_run1.nuc.txt

#NT
CUU	chr4:100533969-100534231(+)$1	262	6	9	8.9999
CUU	chr18:56825881-56826100(+)$1	219	154	157	8.9999
CUU	chr3:186338830-186339043(+)$1	213	21	24	8.9999
CUU	chr17:3512387-3512656(-)$1	269	72	75	8.9999
CUU	chr4:100510739-100511006(+)$1	267	26	29	8.9999
CUU	chr12:110770900-110771153(+)$1	253	75	78	8.9999
CUU	chr6:31828114-31828346(-)$1	232	16	19	8.9999
CUU	chr2:131808624-131808866(-)$1	242	20	23	8.9999
CUU	chr14:81942511-81942747(-)$1	236	30	33	8.9999
CUU	chr19:6690539-6690741(-)$1	202	47	50	8.9999
CUU	chr1:11709927-11710189(-)$1	262	11	14	8.9999
CUU	chr5:180218370-180218616(-)$1	246	10	13	8.9999
CUU	chr19:39306491-39306723(-)$1	232	3	6	8.9999
CUU	chr3:186333460-186333673(+)$1	213	133	136	8.9999
CUU	chr15:51014275-51014499(-)$1	224	27	30	8.9999
CUU	chr1:179044714-179044992(+)$1	278	164	167	8.9999
CUU	chr1:155289347-155289577(+)$1	230	29	32	8.9999
CUU	chr2:216287999-216288210(-)$1	211	7	10	8.9999
CUU	chr17:1303283-1303507(-)$1	224	62	65	8.9999
CUU	chr15:58932874-58933124(-)$1	250	2	5	8.9999
CUU	chr4:79187979-79188190(+)$1	211	128	131	8.9999
CUU	chr2:97405541-97405788(-)$1	247	32	35	8.9999
CUU	chr12:57850824-57851092(+)$1	268	29	32	8.9999
CUU	chr18:56825920-56826149(+)$1	229	115	118	8.9999
cuu	chr20:45363331-45363610(+)$1	279	57	60	8.9999
CUU	chr17:46137620-46137866(+)$1	246	16	19	8.9999
CUU	chr15:64975197-64975513(+)$1	316	29	32	8.9999
CUU	chr7:103294506-103294744(-)$1	238	69	72	8.9999
CUU	chr14:53242951-53243222(-)$1	271	34	37	8.9999
CUU	chr7:107621063-107621311(-)$1	248	6	9	8.9999
CUU	chr21:46687442-46687693(-)$1	251	18	21	8.9999
CUU	chr17:61823187-61823421(-)$1	234	4	7	8.9999
CUU	chr2:54039994-54040225(+)$1	231	7	10	8.9999
CUU	chr3:129370176-129370441(-)$1	265	26	29	8.9999
CUU	chr12:109539606-109539852(+)$1	246	54	57	8.9999
CUU	chr7:107577609-107577822(-)$1	213	56	59	8.9999
CUU	chr6:122765673-122765920(-)$1	247	55	58	8.9999
CUU	chr16:8926235-8926483(+)$1	248	12	15	8.9999
CUU	chr6:16303509-16303798(-)$1	289	1	4	8.9999
CUU	chr16:105731-105940(+)$1	209	17	20	8.9999
CUU	chr6:7562832-7563077(+)$1	245	33	36	8.9999
CUU	chr2:21247872-21248093(-)$1	221	189	192	8.9999
CUU	chr15:73852741-73852996(-)$1	255	74	77	8.9999
CUU	chr20:3628752-3628995(+)$1	243	41	44	8.9999
CUU	chr3:133473269-133473514(+)$1	245	43	46	8.9999
CUU	chr2:74597324-74597573(-)$1	249	9	12	8.9999
CUU	chr12:58109799-58110075(+)$1	276	53	56	8.9999
CUU	chr1:161182038-161182338(+)$1	300	15	18	8.9999
CUU	chr7:6078090-6078350(-)$1	260	208	211	8.9999
CUU	chr1:31405213-31405494(-)$1	281	35	38	8.9999
CUU	chr17:2196080-2196355(-)$1	275	24	27	8.9999
CUU	chr20:25206689-25206941(+)$1	252	73	76	8.9999
CUU	chr3:183898563-183898864(+)$1	301	162	165	8.9999
CUU	chr2:54856803-54857038(+)$1	235	171	174	8.9999
CUU	chr1:236723010-236723238(-)$1	228	8	11	8.9999
CUU	chr16:29822007-29822262(+)$1	255	93	96	8.9999
CUU	chr2:85808672-85808938(+)$1	266	12	15	8.9999
CUU	chr3:69150898-69151152(+)$1	254	25	28	8.9999
CUU	chr19:6707711-6707984(-)$1	273	112	115	8.9999
CUU	chr11:129998860-129999156(+)$1	296	22	25	8.9999
CUU	chr9:114820625-114820880(-)$1	255	115	118	8.9999
CUU	chr12:56490429-56490676(+)$1	247	71	74	8.9999
CUU	chr20:61538544-61538783(-)$1	239	15	18	8.9999
CUU	chr4:74280659-74280864(+)$1	205	17	20	8.9999
CUU	chr17:76168631-76168885(+)$1	254	9	12	8.9999
CUU	chr19:6706988-6707212(-)$1	224	49	52	8.9999
CUU	chrX:153579883-153580133(-)$1	250	47	50	8.9999
CUU	chr12:48374597-48374837(-)$1	240	18	21	8.9999
CUU	chr2:42522467-42522757(+)$1	290	46	49	8.9999
CUU	chr10:102122274-102122489(+)$1	215	4	7	8.9999
CUU	chr1:11083342-11083567(+)$1	225	36	39	8.9999
CUU	chr20:22541816-22542091(-)$1	275	153	156	8.9999
CUU	chr2:169628510-169628757(+)$1	247	29	32	8.9999
CUU	chr11:33349964-33350275(+)$1	311	14	17	8.9999
CUU	chr11:46750116-46750354(+)$1	238	46	49	8.9999
CUU	chr17:47004269-47004520(+)$1	251	19	22	8.9999
cuu	chr7:107260375-107260627(+)$1	252	14	17	8.9999
CUU	chr20:3766466-3766730(-)$1	264	205	208	8.9999
CUU	chr8:91054854-91055092(+)$1	238	47	50	8.9999
CUU	chr13:113771014-113771291(+)$1	277	1	4	8.9999
CUU	chr5:95130455-95130712(+)$1	257	32	35	8.9999
CUU	chr11:812011-812245(+)$1	234	21	24	8.9999
CUU	chr7:94296076-94296296(+)$1	220	9	12	8.9999
CUU	chr19:18417732-18418004(-)$1	272	59	62	8.9999
CUU	chr1:160327926-160328223(+)$1	297	32	35	8.9999
cuu	chr7:55529012-55529297(-)$1	285	85	88	8.9999
CUU	chrX:133081648-133081859(-)$1	211	141	144	8.9999
CUU	chr9:136271254-136271559(-)$1	305	15	18	8.9999
CUU	chr9:34093237-34093524(-)$1	287	30	33	8.9999
CUU	chr19:17355670-17355976(-)$1	306	156	159	8.9999
CUU	chr17:7215047-7215261(+)$1	214	3	6	8.9999
CUU	chr20:26188739-26188956(-)$1	217	24	27	8.9999

#otherMatches

#Struct PSSM
::c	chr15:69071863-69072126(-)$1	263	37	40	8.9999
:::	chr4:100533969-100534231(+)$1	262	6	9	8.9999
ddd	chr18:56825881-56826100(+)$1	219	154	157	8.9999
:::	chr3:186338830-186339043(+)$1	213	21	24	8.9999
3ff	chr17:3512387-3512656(-)$1	269	72	75	8.9999
III	chr4:100510739-100511006(+)$1	267	26	29	8.9999
eee	chr12:110770900-110771153(+)$1	253	75	78	8.9999
amm	chr6:31828114-31828346(-)$1	232	16	19	8.9999
ddd	chr2:131808624-131808866(-)$1	242	20	23	8.9999
""e	chr14:81942511-81942747(-)$1	236	30	33	8.9999
d22	chr19:6690539-6690741(-)$1	202	47	50	8.9999
iii	chr1:11709927-11710189(-)$1	262	11	14	8.9999
JJJ	chr5:180218370-180218616(-)$1	246	10	13	8.9999
GGG	chr19:39306491-39306723(-)$1	232	3	6	8.9999
ccm	chr3:186333460-186333673(+)$1	213	133	136	8.9999
DTT	chr15:51014275-51014499(-)$1	224	27	30	8.9999
(((	chr1:179044714-179044992(+)$1	278	164	167	8.9999
e::	chr1:155289347-155289577(+)$1	230	29	32	8.9999
FFF	chr2:216287999-216288210(-)$1	211	7	10	8.9999
]cc	chr17:1303283-1303507(-)$1	224	62	65	8.9999
EEE	chr15:58932874-58933124(-)$1	250	2	5	8.9999
eee	chr4:79187979-79188190(+)$1	211	128	131	8.9999
lll	chr2:97405541-97405788(-)$1	247	32	35	8.9999
HHH	chr12:57850824-57851092(+)$1	268	29	32	8.9999
ddd	chr18:56825920-56826149(+)$1	229	115	118	8.9999
dd!	chr20:45363331-45363610(+)$1	279	57	60	8.9999
ee[	chr17:46137620-46137866(+)$1	246	16	19	8.9999
:::	chr15:64975197-64975513(+)$1	316	29	32	8.9999
CCC	chr7:103294506-103294744(-)$1	238	69	72	8.9999
ff#	chr14:53242951-53243222(-)$1	271	34	37	8.9999
GGG	chr7:107621063-107621311(-)$1	248	6	9	8.9999
III	chr21:46687442-46687693(-)$1	251	18	21	8.9999
HHH	chr17:61823187-61823421(-)$1	234	4	7	8.9999
ddd	chr2:54039994-54040225(+)$1	231	7	10	8.9999
xxx	chr3:129370176-129370441(-)$1	265	26	29	8.9999
DDD	chr12:109539606-109539852(+)$1	246	54	57	8.9999
&&=	chr7:107577609-107577822(-)$1	213	56	59	8.9999
Fdd	chr6:122765673-122765920(-)$1	247	55	58	8.9999
ddd	chr16:8926235-8926483(+)$1	248	12	15	8.9999
:::	chr6:16303509-16303798(-)$1	289	1	4	8.9999
"""	chr16:105731-105940(+)$1	209	17	20	8.9999
eee	chr6:7562832-7563077(+)$1	245	33	36	8.9999
qqq	chr2:21247872-21248093(-)$1	221	189	192	8.9999
eee	chr15:73852741-73852996(-)$1	255	74	77	8.9999
ttt	chr20:3628752-3628995(+)$1	243	41	44	8.9999
ee:	chr3:133473269-133473514(+)$1	245	43	46	8.9999
MMM	chr2:74597324-74597573(-)$1	249	9	12	8.9999
fff	chr12:58109799-58110075(+)$1	276	53	56	8.9999
sss	chr1:161182038-161182338(+)$1	300	15	18	8.9999
]ee	chr7:6078090-6078350(-)$1	260	208	211	8.9999
fff	chr1:31405213-31405494(-)$1	281	35	38	8.9999
CCC	chr17:2196080-2196355(-)$1	275	24	27	8.9999
FFF	chr20:25206689-25206941(+)$1	252	73	76	8.9999
d22	chr3:183898563-183898864(+)$1	301	162	165	8.9999
FFF	chr2:54856803-54857038(+)$1	235	171	174	8.9999
FFF	chr1:236723010-236723238(-)$1	228	8	11	8.9999
hhh	chr16:29822007-29822262(+)$1	255	93	96	8.9999
uuu	chr2:85808672-85808938(+)$1	266	12	15	8.9999
:::	chr3:69150898-69151152(+)$1	254	25	28	8.9999
==3	chr19:6707711-6707984(-)$1	273	112	115	8.9999
DDD	chr11:129998860-129999156(+)$1	296	22	25	8.9999
eee	chr9:114820625-114820880(-)$1	255	115	118	8.9999
ddd	chr12:56490429-56490676(+)$1	247	71	74	8.9999
:::	chr20:61538544-61538783(-)$1	239	15	18	8.9999
b&&	chr4:74280659-74280864(+)$1	205	17	20	8.9999
ddd	chr17:76168631-76168885(+)$1	254	9	12	8.9999
mmm	chr19:6706988-6707212(-)$1	224	49	52	8.9999
ee2	chrX:153579883-153580133(-)$1	250	47	50	8.9999
gg:	chr12:48374597-48374837(-)$1	240	18	21	8.9999
ooo	chr2:42522467-42522757(+)$1	290	46	49	8.9999
::C	chr10:102122274-102122489(+)$1	215	4	7	8.9999
cll	chr1:11083342-11083567(+)$1	225	36	39	8.9999
"""	chr20:22541816-22542091(-)$1	275	153	156	8.9999
ddd	chr2:169628510-169628757(+)$1	247	29	32	8.9999
:cc	chr11:33349964-33350275(+)$1	311	14	17	8.9999
eee	chr11:46750116-46750354(+)$1	238	46	49	8.9999
KKE	chr17:47004269-47004520(+)$1	251	19	22	8.9999
!dd	chr7:107260375-107260627(+)$1	252	14	17	8.9999
'''	chr20:3766466-3766730(-)$1	264	205	208	8.9999
ETT	chr8:91054854-91055092(+)$1	238	47	50	8.9999
GGG	chr13:113771014-113771291(+)$1	277	1	4	8.9999
c22	chr5:95130455-95130712(+)$1	257	32	35	8.9999
"""	chr11:812011-812245(+)$1	234	21	24	8.9999
fff	chr7:94296076-94296296(+)$1	220	9	12	8.9999
{DD	chr19:18417732-18418004(-)$1	272	59	62	8.9999
:::	chr1:160327926-160328223(+)$1	297	32	35	8.9999
fff	chr7:55529012-55529297(-)$1	285	85	88	8.9999
DDD	chrX:133081648-133081859(-)$1	211	141	144	8.9999
:::	chr9:136271254-136271559(-)$1	305	15	18	8.9999
:::	chr9:34093237-34093524(-)$1	287	30	33	8.9999
ddd	chr19:17355670-17355976(-)$1	306	156	159	8.9999
crr	chr17:7215047-7215261(+)$1	214	3	6	8.9999
ggg	chr20:26188739-26188956(-)$1	217	24	27	8.9999

#DB
..(	chr15:69071863-69072126(-)$1	1	37	40	8.9999
...	chr4:100533969-100534231(+)$1	1	6	9	8.9999
)))	chr18:56825881-56826100(+)$1	1	154	157	8.9999
...	chr3:186338830-186339043(+)$1	1	21	24	8.9999
.))	chr17:3512387-3512656(-)$1	1	72	75	8.9999
(((	chr4:100510739-100511006(+)$1	1	26	29	8.9999
)))	chr12:110770900-110771153(+)$1	1	75	78	8.9999
(..	chr6:31828114-31828346(-)$1	1	16	19	8.9999
(((	chr2:131808624-131808866(-)$1	1	20	23	8.9999
..(	chr14:81942511-81942747(-)$1	1	30	33	8.9999
)..	chr19:6690539-6690741(-)$1	1	47	50	8.9999
(((	chr1:11709927-11710189(-)$1	1	11	14	8.9999
(((	chr5:180218370-180218616(-)$1	1	10	13	8.9999
(((	chr19:39306491-39306723(-)$1	1	3	6	8.9999
((.	chr3:186333460-186333673(+)$1	1	133	136	8.9999
(..	chr15:51014275-51014499(-)$1	1	27	30	8.9999
...	chr1:179044714-179044992(+)$1	1	164	167	8.9999
)..	chr1:155289347-155289577(+)$1	1	29	32	8.9999
(((	chr2:216287999-216288210(-)$1	1	7	10	8.9999
.))	chr17:1303283-1303507(-)$1	1	62	65	8.9999
(((	chr15:58932874-58933124(-)$1	1	2	5	8.9999
(((	chr4:79187979-79188190(+)$1	1	128	131	8.9999
...	chr2:97405541-97405788(-)$1	1	32	35	8.9999
(((	chr12:57850824-57851092(+)$1	1	29	32	8.9999
)))	chr18:56825920-56826149(+)$1	1	115	118	8.9999
((.	chr20:45363331-45363610(+)$1	1	57	60	8.9999
((.	chr17:46137620-46137866(+)$1	1	16	19	8.9999
...	chr15:64975197-64975513(+)$1	1	29	32	8.9999
(((	chr7:103294506-103294744(-)$1	1	69	72	8.9999
((.	chr14:53242951-53243222(-)$1	1	34	37	8.9999
(((	chr7:107621063-107621311(-)$1	1	6	9	8.9999
(((	chr21:46687442-46687693(-)$1	1	18	21	8.9999
(((	chr17:61823187-61823421(-)$1	1	4	7	8.9999
(((	chr2:54039994-54040225(+)$1	1	7	10	8.9999
...	chr3:129370176-129370441(-)$1	1	26	29	8.9999
(((	chr12:109539606-109539852(+)$1	1	54	57	8.9999
..(	chr7:107577609-107577822(-)$1	1	56	59	8.9999
(((	chr6:122765673-122765920(-)$1	1	55	58	8.9999
(((	chr16:8926235-8926483(+)$1	1	12	15	8.9999
...	chr6:16303509-16303798(-)$1	1	1	4	8.9999
...	chr16:105731-105940(+)$1	1	17	20	8.9999
(((	chr6:7562832-7563077(+)$1	1	33	36	8.9999
...	chr2:21247872-21248093(-)$1	1	189	192	8.9999
(((	chr15:73852741-73852996(-)$1	1	74	77	8.9999
...	chr20:3628752-3628995(+)$1	1	41	44	8.9999
)).	chr3:133473269-133473514(+)$1	1	43	46	8.9999
...	chr2:74597324-74597573(-)$1	1	9	12	8.9999
(((	chr12:58109799-58110075(+)$1	1	53	56	8.9999
...	chr1:161182038-161182338(+)$1	1	15	18	8.9999
.))	chr7:6078090-6078350(-)$1	1	208	211	8.9999
(((	chr1:31405213-31405494(-)$1	1	35	38	8.9999
(((	chr17:2196080-2196355(-)$1	1	24	27	8.9999
(((	chr20:25206689-25206941(+)$1	1	73	76	8.9999
)..	chr3:183898563-183898864(+)$1	1	162	165	8.9999
)))	chr2:54856803-54857038(+)$1	1	171	174	8.9999
(((	chr1:236723010-236723238(-)$1	1	8	11	8.9999
(((	chr16:29822007-29822262(+)$1	1	93	96	8.9999
...	chr2:85808672-85808938(+)$1	1	12	15	8.9999
...	chr3:69150898-69151152(+)$1	1	25	28	8.9999
)).	chr19:6707711-6707984(-)$1	1	112	115	8.9999
(((	chr11:129998860-129999156(+)$1	1	22	25	8.9999
(((	chr9:114820625-114820880(-)$1	1	115	118	8.9999
)))	chr12:56490429-56490676(+)$1	1	71	74	8.9999
...	chr20:61538544-61538783(-)$1	1	15	18	8.9999
(..	chr4:74280659-74280864(+)$1	1	17	20	8.9999
(((	chr17:76168631-76168885(+)$1	1	9	12	8.9999
...	chr19:6706988-6707212(-)$1	1	49	52	8.9999
)).	chrX:153579883-153580133(-)$1	1	47	50	8.9999
)).	chr12:48374597-48374837(-)$1	1	18	21	8.9999
...	chr2:42522467-42522757(+)$1	1	46	49	8.9999
..(	chr10:102122274-102122489(+)$1	1	4	7	8.9999
(..	chr1:11083342-11083567(+)$1	1	36	39	8.9999
...	chr20:22541816-22542091(-)$1	1	153	156	8.9999
(((	chr2:169628510-169628757(+)$1	1	29	32	8.9999
.((	chr11:33349964-33350275(+)$1	1	14	17	8.9999
)))	chr11:46750116-46750354(+)$1	1	46	49	8.9999
..(	chr17:47004269-47004520(+)$1	1	19	22	8.9999
.((	chr7:107260375-107260627(+)$1	1	14	17	8.9999
...	chr20:3766466-3766730(-)$1	1	205	208	8.9999
(..	chr8:91054854-91055092(+)$1	1	47	50	8.9999
(((	chr13:113771014-113771291(+)$1	1	1	4	8.9999
)..	chr5:95130455-95130712(+)$1	1	32	35	8.9999
...	chr11:812011-812245(+)$1	1	21	24	8.9999
(((	chr7:94296076-94296296(+)$1	1	9	12	8.9999
.((	chr19:18417732-18418004(-)$1	1	59	62	8.9999
...	chr1:160327926-160328223(+)$1	1	32	35	8.9999
)))	chr7:55529012-55529297(-)$1	1	85	88	8.9999
)))	chrX:133081648-133081859(-)$1	1	141	144	8.9999
...	chr9:136271254-136271559(-)$1	1	15	18	8.9999
...	chr9:34093237-34093524(-)$1	1	30	33	8.9999
(((	chr19:17355670-17355976(-)$1	1	156	159	8.9999
(..	chr17:7215047-7215261(+)$1	1	3	6	8.9999
(((	chr20:26188739-26188956(-)$1	1	24	27	8.9999

#PSSM
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	

#score	836.9999999999999
#seq	93
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_CDS_m1_run1.nuc.txt

#NT
UCUU	chr15:76584859-76585142(-)$1	283	87	91	11.9999
UCUU	chr2:111395409-111395659(-)$1	250	90	94	11.9999
ucuu	chr6:36569653-36569931(+)$1	278	62	66	11.9999
UCUU	chr6:18255864-18256178(-)$1	314	76	80	11.9999
UCUU	chr18:2616450-2616728(+)$1	278	108	112	11.9999
UCUU	chr9:99150362-99150622(-)$1	260	117	121	11.9999
UCUU	chr8:48875480-48875701(+)$1	221	108	112	11.9999
UCUU	chr17:1563724-1563974(-)$1	250	31	35	11.9999
UCUU	chr11:44265642-44265916(+)$1	274	85	89	11.9999
UCUU	chr17:65722471-65722751(+)$1	280	20	24	11.9999
UCUU	chr15:50955058-50955327(-)$1	269	32	36	11.9999
UCUU	chr4:186339655-186339953(-)$1	298	16	20	11.9999
UCUU	chr8:82586030-82586284(-)$1	254	26	30	11.9999
UCUU	chr6:10751258-10751498(+)$1	240	9	13	11.9999
UCUU	chr8:126033925-126034194(+)$1	269	38	42	11.9999
UCUU	chr1:154197484-154197750(+)$1	266	58	62	11.9999
UCUU	chr6:33243727-33243939(+)$1	212	72	76	11.9999
UCUU	chr3:150460347-150460586(-)$1	239	88	92	11.9999
UCUU	chr16:27246401-27246675(-)$1	274	106	110	11.9999
UCUU	chr10:88233585-88233831(-)$1	246	32	36	11.9999
UCUU	chr12:57106225-57106436(-)$1	211	83	87	11.9999
UCUU	chr11:118452008-118452247(+)$1	239	202	206	11.9999
UCUU	chr2:169732514-169732767(-)$1	253	232	236	11.9999
UCUU	chr18:2572948-2573188(+)$1	240	178	182	11.9999
UCUU	chrX:123199930-123200209(+)$1	279	141	145	11.9999
UCUU	chr2:170460658-170460872(+)$1	214	28	32	11.9999
UCUU	chr16:46715188-46715443(-)$1	255	211	215	11.9999
UCUU	chr3:33729722-33729961(-)$1	239	89	93	11.9999
UCUU	chr17:73774518-73774776(-)$1	258	219	223	11.9999
UCUU	chr19:3980502-3980756(-)$1	254	77	81	11.9999
UCUU	chr15:102182559-102182798(-)$1	239	19	23	11.9999
ucuu	chr13:29252114-29252413(+)$1	299	11	15	11.9999
UCUU	chr5:71516663-71516940(-)$1	277	12	16	11.9999
UCUU	chr7:44684824-44685082(+)$1	258	88	92	11.9999
UCUU	chrX:100624892-100625168(-)$1	276	45	49	11.9999
UCUU	chr6:99994176-99994465(-)$1	289	47	51	11.9999
uCUU	chr11:77780818-77781123(-)$1	305	16	20	11.9999
UCUU	chr1:186282934-186283211(-)$1	277	11	15	11.9999
UCUU	chr4:54325503-54325787(+)$1	284	164	168	11.9999
UCUU	chr16:84163163-84163431(-)$1	268	25	29	11.9999
UCUU	chr20:31395596-31395843(+)$1	247	75	79	11.9999
UCUU	chr8:48875469-48875680(+)$1	211	119	123	11.9999
UCUU	chr6:33243714-33243927(+)$1	213	85	89	11.9999
UCUU	chr3:73114611-73114851(+)$1	240	127	131	11.9999
UCUU	chr3:184082876-184083115(+)$1	239	12	16	11.9999
UCUU	chr9:34017008-34017278(-)$1	270	2	6	11.9999
UCUU	chr5:41911080-41911342(+)$1	262	49	53	11.9999
UCUU	chr10:12214692-12214958(-)$1	266	21	25	11.9999
UCUU	chr6:133110826-133111084(-)$1	258	7	11	11.9999
UCUU	chr14:20784486-20784776(-)$1	290	51	55	11.9999
UCUU	chr1:39759023-39759261(+)$1	238	51	55	11.9999
UCUU	chr11:78270498-78270766(-)$1	268	47	51	11.9999
UCUU	chr3:185641515-185641767(-)$1	252	18	22	11.9999
UCUU	chr6:153292213-153292524(-)$1	311	229	233	11.9999
UCUU	chr10:70513520-70513799(+)$1	279	274	278	11.9999
UCUU	chrX:117679939-117680181(+)$1	242	50	54	11.9999
UCUU	chr1:184663227-184663497(-)$1	270	1	5	11.9999
UCUU	chr2:24296880-24297164(-)$1	284	224	228	11.9999
UCUU	chr3:100432397-100432654(+)$1	257	10	14	11.9999
UCUU	chr19:3980556-3980766(-)$1	210	87	91	11.9999
UCUU	chr14:20825773-20826024(+)$1	251	213	217	11.9999
UCUU	chr16:75611158-75611453(+)$1	295	9	13	11.9999
UCUU	chr5:1814388-1814677(+)$1	289	46	50	11.9999
UCUU	chr1:161326492-161326731(+)$1	239	24	28	11.9999
UCUU	chr4:89442601-89442831(-)$1	230	27	31	11.9999
UCUU	chr2:38812789-38813049(-)$1	260	221	225	11.9999
UCUU	chr6:135514876-135515158(+)$1	282	85	89	11.9999
UCUU	chr14:68113298-68113557(+)$1	259	8	12	11.9999
UCUU	chr17:34174002-34174318(+)$1	316	29	33	11.9999
UCUU	chr1:93575794-93576056(+)$1	262	80	84	11.9999
UCUU	chr15:77346419-77346680(-)$1	261	42	46	11.9999
UCUU	chr22:29120906-29121212(-)$1	306	118	122	11.9999
UCUU	chr1:53699175-53699425(-)$1	250	28	32	11.9999
UCUU	chr14:96998861-96999092(+)$1	231	89	93	11.9999
UCUU	chr11:118886450-118886698(-)$1	248	209	213	11.9999
UCUU	chr19:13033330-13033614(-)$1	284	169	173	11.9999
UCUU	chr1:28233634-28233888(-)$1	254	61	65	11.9999
UCUU	chr6:33665322-33665555(-)$1	233	4	8	11.9999
UCUU	chr16:56717803-56718051(+)$1	248	56	60	11.9999

#otherMatches

#Struct PSSM
EEE:	chr14:97014078-97014338(+)$1	260	28	32	11.9999
fff]	chr15:76584859-76585142(-)$1	283	87	91	11.9999
eee:	chr2:111395409-111395659(-)$1	250	90	94	11.9999
iii[	chr6:36569653-36569931(+)$1	278	62	66	11.9999
GGG:	chr6:18255864-18256178(-)$1	314	76	80	11.9999
IIII	chr18:2616450-2616728(+)$1	278	108	112	11.9999
sssd	chr9:99150362-99150622(-)$1	260	117	121	11.9999
gggg	chr8:48875480-48875701(+)$1	221	108	112	11.9999
GGGG	chr17:1563724-1563974(-)$1	250	31	35	11.9999
e!!d	chr11:44265642-44265916(+)$1	274	85	89	11.9999
i:::	chr17:65722471-65722751(+)$1	280	20	24	11.9999
::JJ	chr15:50955058-50955327(-)$1	269	32	36	11.9999
::::	chr4:186339655-186339953(-)$1	298	16	20	11.9999
###c	chr8:82586030-82586284(-)$1	254	26	30	11.9999
ff!!	chr6:10751258-10751498(+)$1	240	9	13	11.9999
I::c	chr8:126033925-126034194(+)$1	269	38	42	11.9999
^^ff	chr1:154197484-154197750(+)$1	266	58	62	11.9999
ffff	chr6:33243727-33243939(+)$1	212	72	76	11.9999
ssss	chr3:150460347-150460586(-)$1	239	88	92	11.9999
e22i	chr16:27246401-27246675(-)$1	274	106	110	11.9999
nnnn	chr10:88233585-88233831(-)$1	246	32	36	11.9999
dddd	chr12:57106225-57106436(-)$1	211	83	87	11.9999
eeee	chr11:118452008-118452247(+)$1	239	202	206	11.9999
gggg	chr2:169732514-169732767(-)$1	253	232	236	11.9999
zzzz	chr18:2572948-2573188(+)$1	240	178	182	11.9999
###h	chrX:123199930-123200209(+)$1	279	141	145	11.9999
eeer	chr2:170460658-170460872(+)$1	214	28	32	11.9999
EEEE	chr16:46715188-46715443(-)$1	255	211	215	11.9999
hhhh	chr3:33729722-33729961(-)$1	239	89	93	11.9999
eeee	chr17:73774518-73774776(-)$1	258	219	223	11.9999
bbmm	chr19:3980502-3980756(-)$1	254	77	81	11.9999
emmm	chr15:102182559-102182798(-)$1	239	19	23	11.9999
ddoo	chr13:29252114-29252413(+)$1	299	11	15	11.9999
CCC:	chr5:71516663-71516940(-)$1	277	12	16	11.9999
fbbb	chr7:44684824-44685082(+)$1	258	88	92	11.9999
GGGG	chrX:100624892-100625168(-)$1	276	45	49	11.9999
$$$$	chr6:99994176-99994465(-)$1	289	47	51	11.9999
JJJJ	chr11:77780818-77781123(-)$1	305	16	20	11.9999
cccm	chr1:186282934-186283211(-)$1	277	11	15	11.9999
GGGG	chr4:54325503-54325787(+)$1	284	164	168	11.9999
::::	chr16:84163163-84163431(-)$1	268	25	29	11.9999
IIII	chr20:31395596-31395843(+)$1	247	75	79	11.9999
gggg	chr8:48875469-48875680(+)$1	211	119	123	11.9999
ffff	chr6:33243714-33243927(+)$1	213	85	89	11.9999
====	chr3:73114611-73114851(+)$1	240	127	131	11.9999
JJJJ	chr3:184082876-184083115(+)$1	239	12	16	11.9999
::::	chr9:34017008-34017278(-)$1	270	2	6	11.9999
fff:	chr5:41911080-41911342(+)$1	262	49	53	11.9999
SSSS	chr10:12214692-12214958(-)$1	266	21	25	11.9999
[eee	chr6:133110826-133111084(-)$1	258	7	11	11.9999
^^^^	chr14:20784486-20784776(-)$1	290	51	55	11.9999
FFFF	chr1:39759023-39759261(+)$1	238	51	55	11.9999
c[ee	chr11:78270498-78270766(-)$1	268	47	51	11.9999
%%%%	chr3:185641515-185641767(-)$1	252	18	22	11.9999
dddd	chr6:153292213-153292524(-)$1	311	229	233	11.9999
::::	chr10:70513520-70513799(+)$1	279	274	278	11.9999
"fff	chrX:117679939-117680181(+)$1	242	50	54	11.9999
FFFF	chr1:184663227-184663497(-)$1	270	1	5	11.9999
bbnn	chr2:24296880-24297164(-)$1	284	224	228	11.9999
BBFF	chr3:100432397-100432654(+)$1	257	10	14	11.9999
bbmm	chr19:3980556-3980766(-)$1	210	87	91	11.9999
dddd	chr14:20825773-20826024(+)$1	251	213	217	11.9999
g[dd	chr16:75611158-75611453(+)$1	295	9	13	11.9999
bb[c	chr5:1814388-1814677(+)$1	289	46	50	11.9999
dbbn	chr1:161326492-161326731(+)$1	239	24	28	11.9999
FFFF	chr4:89442601-89442831(-)$1	230	27	31	11.9999
!!ee	chr2:38812789-38813049(-)$1	260	221	225	11.9999
c!!g	chr6:135514876-135515158(+)$1	282	85	89	11.9999
:::E	chr14:68113298-68113557(+)$1	259	8	12	11.9999
::cc	chr17:34174002-34174318(+)$1	316	29	33	11.9999
''ff	chr1:93575794-93576056(+)$1	262	80	84	11.9999
[aqq	chr15:77346419-77346680(-)$1	261	42	46	11.9999
::::	chr22:29120906-29121212(-)$1	306	118	122	11.9999
====	chr1:53699175-53699425(-)$1	250	28	32	11.9999
ffff	chr14:96998861-96999092(+)$1	231	89	93	11.9999
2ddd	chr11:118886450-118886698(-)$1	248	209	213	11.9999
::::	chr19:13033330-13033614(-)$1	284	169	173	11.9999
22ee	chr1:28233634-28233888(-)$1	254	61	65	11.9999
gggg	chr6:33665322-33665555(-)$1	233	4	8	11.9999
::::	chr16:56717803-56718051(+)$1	248	56	60	11.9999

#DB
(((.	chr14:97014078-97014338(+)$1	1	28	32	11.9999
))).	chr15:76584859-76585142(-)$1	1	87	91	11.9999
))).	chr2:111395409-111395659(-)$1	1	90	94	11.9999
(((.	chr6:36569653-36569931(+)$1	1	62	66	11.9999
(((.	chr6:18255864-18256178(-)$1	1	76	80	11.9999
))))	chr18:2616450-2616728(+)$1	1	108	112	11.9999
...)	chr9:99150362-99150622(-)$1	1	117	121	11.9999
((((	chr8:48875480-48875701(+)$1	1	108	112	11.9999
((((	chr17:1563724-1563974(-)$1	1	31	35	11.9999
(..(	chr11:44265642-44265916(+)$1	1	85	89	11.9999
)...	chr17:65722471-65722751(+)$1	1	20	24	11.9999
..((	chr15:50955058-50955327(-)$1	1	32	36	11.9999
....	chr4:186339655-186339953(-)$1	1	16	20	11.9999
...(	chr8:82586030-82586284(-)$1	1	26	30	11.9999
((..	chr6:10751258-10751498(+)$1	1	9	13	11.9999
(..(	chr8:126033925-126034194(+)$1	1	38	42	11.9999
..))	chr1:154197484-154197750(+)$1	1	58	62	11.9999
((((	chr6:33243727-33243939(+)$1	1	72	76	11.9999
....	chr3:150460347-150460586(-)$1	1	88	92	11.9999
)..)	chr16:27246401-27246675(-)$1	1	106	110	11.9999
....	chr10:88233585-88233831(-)$1	1	32	36	11.9999
))))	chr12:57106225-57106436(-)$1	1	83	87	11.9999
))))	chr11:118452008-118452247(+)$1	1	202	206	11.9999
))))	chr2:169732514-169732767(-)$1	1	232	236	11.9999
....	chr18:2572948-2573188(+)$1	1	178	182	11.9999
...(	chrX:123199930-123200209(+)$1	1	141	145	11.9999
(((.	chr2:170460658-170460872(+)$1	1	28	32	11.9999
))))	chr16:46715188-46715443(-)$1	1	211	215	11.9999
))))	chr3:33729722-33729961(-)$1	1	89	93	11.9999
((((	chr17:73774518-73774776(-)$1	1	219	223	11.9999
((..	chr19:3980502-3980756(-)$1	1	77	81	11.9999
(...	chr15:102182559-102182798(-)$1	1	19	23	11.9999
((..	chr13:29252114-29252413(+)$1	1	11	15	11.9999
(((.	chr5:71516663-71516940(-)$1	1	12	16	11.9999
))))	chr7:44684824-44685082(+)$1	1	88	92	11.9999
((((	chrX:100624892-100625168(-)$1	1	45	49	11.9999
....	chr6:99994176-99994465(-)$1	1	47	51	11.9999
((((	chr11:77780818-77781123(-)$1	1	16	20	11.9999
(((.	chr1:186282934-186283211(-)$1	1	11	15	11.9999
))))	chr4:54325503-54325787(+)$1	1	164	168	11.9999
....	chr16:84163163-84163431(-)$1	1	25	29	11.9999
((((	chr20:31395596-31395843(+)$1	1	75	79	11.9999
((((	chr8:48875469-48875680(+)$1	1	119	123	11.9999
((((	chr6:33243714-33243927(+)$1	1	85	89	11.9999
((((	chr3:73114611-73114851(+)$1	1	127	131	11.9999
((((	chr3:184082876-184083115(+)$1	1	12	16	11.9999
....	chr9:34017008-34017278(-)$1	1	2	6	11.9999
))).	chr5:41911080-41911342(+)$1	1	49	53	11.9999
....	chr10:12214692-12214958(-)$1	1	21	25	11.9999
.(((	chr6:133110826-133111084(-)$1	1	7	11	11.9999
....	chr14:20784486-20784776(-)$1	1	51	55	11.9999
((((	chr1:39759023-39759261(+)$1	1	51	55	11.9999
(.((	chr11:78270498-78270766(-)$1	1	47	51	11.9999
....	chr3:185641515-185641767(-)$1	1	18	22	11.9999
))))	chr6:153292213-153292524(-)$1	1	229	233	11.9999
....	chr10:70513520-70513799(+)$1	1	274	278	11.9999
.(((	chrX:117679939-117680181(+)$1	1	50	54	11.9999
((((	chr1:184663227-184663497(-)$1	1	1	5	11.9999
((..	chr2:24296880-24297164(-)$1	1	224	228	11.9999
((((	chr3:100432397-100432654(+)$1	1	10	14	11.9999
((..	chr19:3980556-3980766(-)$1	1	87	91	11.9999
((((	chr14:20825773-20826024(+)$1	1	213	217	11.9999
(.((	chr16:75611158-75611453(+)$1	1	9	13	11.9999
((.(	chr5:1814388-1814677(+)$1	1	46	50	11.9999
(((.	chr1:161326492-161326731(+)$1	1	24	28	11.9999
((((	chr4:89442601-89442831(-)$1	1	27	31	11.9999
..((	chr2:38812789-38813049(-)$1	1	221	225	11.9999
(..(	chr6:135514876-135515158(+)$1	1	85	89	11.9999
...(	chr14:68113298-68113557(+)$1	1	8	12	11.9999
..((	chr17:34174002-34174318(+)$1	1	29	33	11.9999
..((	chr1:93575794-93576056(+)$1	1	80	84	11.9999
.(..	chr15:77346419-77346680(-)$1	1	42	46	11.9999
....	chr22:29120906-29121212(-)$1	1	118	122	11.9999
((((	chr1:53699175-53699425(-)$1	1	28	32	11.9999
))))	chr14:96998861-96999092(+)$1	1	89	93	11.9999
.)))	chr11:118886450-118886698(-)$1	1	209	213	11.9999
....	chr19:13033330-13033614(-)$1	1	169	173	11.9999
..))	chr1:28233634-28233888(-)$1	1	61	65	11.9999
((((	chr6:33665322-33665555(-)$1	1	4	8	11.9999
....	chr16:56717803-56718051(+)$1	1	56	60	11.9999

#PSSM
U : 0.96	u : 0.03	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
U : 0.97	u : 0.02	

#score	959.9999999999994
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_CDS_m1_run1.nuc.txt

#NT
AAG	chr21:46281077-46281311(-)$1	234	146	149	9.0000
AAG	chr1:155658049-155658346(-)$1	297	15	18	9.0000
AAG	chr21:46281537-46281788(-)$1	251	6	9	9.0000
AAG	chr7:104753068-104753344(-)$1	276	111	114	9.0000
AAG	chr3:99567019-99567379(+)$1	360	43	46	9.0000
AAG	chr7:6075005-6075275(-)$1	270	60	63	9.0000
AAG	chr17:29632043-29632288(+)$1	245	27	30	9.0000
AAG	chr7:104752680-104752944(-)$1	264	13	16	9.0000
AAG	chr3:99567695-99567949(+)$1	254	36	39	9.0000
aag	chr5:137688299-137688597(+)$1	298	215	218	9.0000
aag	chr12:72255091-72255351(+)$1	260	9	12	9.0000
AAG	chr17:43009326-43009531(-)$1	205	1	4	9.0000
AAg	chr21:38119981-38120194(+)$1	213	83	86	9.0000
AAG	chr17:43009320-43009525(-)$1	205	40	43	9.0000
aag	chr17:6829459-6829708(-)$1	249	140	143	9.0000
AAG	chr7:104752495-104752757(-)$1	262	11	14	9.0000
AAG	chr7:104752927-104753160(-)$1	233	37	40	9.0000
AAG	chr11:120207732-120208063(+)$1	331	43	46	9.0000
AAG	chr3:47324376-47324602(+)$1	226	76	79	9.0000
AAG	chr7:6074940-6075205(-)$1	265	75	78	9.0000
AAg	chr21:38119994-38120204(+)$1	210	70	73	9.0000
AAG	chr7:104752833-104753078(-)$1	245	105	108	9.0000
AAG	chr7:104752577-104752880(-)$1	303	11	14	9.0000
AAG	chr15:28508123-28508384(-)$1	261	72	75	9.0000
AAG	chr6:170844171-170844435(-)$1	264	12	15	9.0000
AAG	chr17:29623014-29623268(+)$1	254	45	48	9.0000
AAG	chr7:6075119-6075377(-)$1	258	2	5	9.0000
AAG	chr3:99549283-99549558(+)$1	275	178	181	9.0000
AAG	chr17:29622089-29622383(+)$1	294	11	14	9.0000
AAG	chr10:90580133-90580359(+)$1	226	124	127	9.0000
AAG	chr17:29632117-29632359(+)$1	242	41	44	9.0000
AAG	chr20:30947459-30947681(+)$1	222	4	7	9.0000
AAG	chr19:2199725-2199994(+)$1	269	55	58	9.0000
AAG	chr3:99567346-99567589(+)$1	243	205	208	9.0000
aag	chr1:225597989-225598219(-)$1	230	23	26	9.0000
AAG	chr16:2028578-2028786(+)$1	208	45	48	9.0000
AAG	chr17:29632440-29632688(+)$1	248	21	24	9.0000
AAG	chr17:29632280-29632538(+)$1	258	41	44	9.0000
AAG	chr7:6071077-6071356(-)$1	279	36	39	9.0000
AAG	chr17:29632020-29632243(+)$1	223	50	53	9.0000
AAG	chr15:28508184-28508421(-)$1	237	109	112	9.0000
AAG	chr17:29632159-29632448(+)$1	289	32	35	9.0000
AAG	chr17:29632338-29632613(+)$1	275	0	3	9.0000
AAG	chrX:41193696-41193954(+)$1	258	121	124	9.0000
AAG	chr7:6075250-6075476(-)$1	226	19	22	9.0000
AAG	chr17:29622563-29622811(+)$1	248	5	8	9.0000
AAG	chr17:29631938-29632178(+)$1	240	6	9	9.0000
AAG	chr17:29622629-29622937(+)$1	308	7	10	9.0000
AAG	chr7:104752407-104752657(-)$1	250	43	46	9.0000
AAG	chr17:29623081-29623317(+)$1	236	68	71	9.0000
AAG	chr7:104752960-104753191(-)$1	231	68	71	9.0000
AAG	chr18:2656154-2656423(+)$1	269	25	28	9.0000
AAG	chr17:29631605-29631859(+)$1	254	25	28	9.0000
AAG	chr17:29622331-29622589(+)$1	258	27	30	9.0000
AAG	chr7:6071032-6071277(-)$1	245	7	10	9.0000
AAG	chr17:29622217-29622487(+)$1	270	141	144	9.0000
AAG	chr7:104753296-104753543(-)$1	247	2	5	9.0000

#otherMatches

#Struct PSSM
hhh	chr7:104752274-104752544(-)$1	270	41	44	9.0000
ddd	chr21:46281077-46281311(-)$1	234	146	149	9.0000
JJJ	chr1:155658049-155658346(-)$1	297	15	18	9.0000
FFF	chr21:46281537-46281788(-)$1	251	6	9	9.0000
::E	chr7:104753068-104753344(-)$1	276	111	114	9.0000
ppp	chr3:99567019-99567379(+)$1	360	43	46	9.0000
""c	chr7:6075005-6075275(-)$1	270	60	63	9.0000
4==	chr17:29632043-29632288(+)$1	245	27	30	9.0000
!bb	chr7:104752680-104752944(-)$1	264	13	16	9.0000
c22	chr3:99567695-99567949(+)$1	254	36	39	9.0000
g[e	chr5:137688299-137688597(+)$1	298	215	218	9.0000
CCK	chr12:72255091-72255351(+)$1	260	9	12	9.0000
:EE	chr17:43009326-43009531(-)$1	205	1	4	9.0000
mmc	chr21:38119981-38120194(+)$1	213	83	86	9.0000
ppp	chr17:43009320-43009525(-)$1	205	40	43	9.0000
b]d	chr17:6829459-6829708(-)$1	249	140	143	9.0000
!!a	chr7:104752495-104752757(-)$1	262	11	14	9.0000
lll	chr7:104752927-104753160(-)$1	233	37	40	9.0000
f!!	chr11:120207732-120208063(+)$1	331	43	46	9.0000
YYG	chr3:47324376-47324602(+)$1	226	76	79	9.0000
EEE	chr7:6074940-6075205(-)$1	265	75	78	9.0000
mmc	chr21:38119994-38120204(+)$1	210	70	73	9.0000
bb:	chr7:104752833-104753078(-)$1	245	105	108	9.0000
:ee	chr7:104752577-104752880(-)$1	303	11	14	9.0000
ee]	chr15:28508123-28508384(-)$1	261	72	75	9.0000
fpp	chr6:170844171-170844435(-)$1	264	12	15	9.0000
###	chr17:29623014-29623268(+)$1	254	45	48	9.0000
:::	chr7:6075119-6075377(-)$1	258	2	5	9.0000
eee	chr3:99549283-99549558(+)$1	275	178	181	9.0000
h!!	chr17:29622089-29622383(+)$1	294	11	14	9.0000
qqb	chr10:90580133-90580359(+)$1	226	124	127	9.0000
fnn	chr17:29632117-29632359(+)$1	242	41	44	9.0000
:::	chr20:30947459-30947681(+)$1	222	4	7	9.0000
[cc	chr19:2199725-2199994(+)$1	269	55	58	9.0000
d[d	chr3:99567346-99567589(+)$1	243	205	208	9.0000
FFF	chr1:225597989-225598219(-)$1	230	23	26	9.0000
ddd	chr16:2028578-2028786(+)$1	208	45	48	9.0000
eee	chr17:29632440-29632688(+)$1	248	21	24	9.0000
gg]	chr17:29632280-29632538(+)$1	258	41	44	9.0000
d::	chr7:6071077-6071356(-)$1	279	36	39	9.0000
eee	chr17:29632020-29632243(+)$1	223	50	53	9.0000
ee]	chr15:28508184-28508421(-)$1	237	109	112	9.0000
###	chr17:29632159-29632448(+)$1	289	32	35	9.0000
::d	chr17:29632338-29632613(+)$1	275	0	3	9.0000
22b	chrX:41193696-41193954(+)$1	258	121	124	9.0000
e!!	chr7:6075250-6075476(-)$1	226	19	22	9.0000
::e	chr17:29622563-29622811(+)$1	248	5	8	9.0000
:::	chr17:29631938-29632178(+)$1	240	6	9	9.0000
LBB	chr17:29622629-29622937(+)$1	308	7	10	9.0000
mbb	chr7:104752407-104752657(-)$1	250	43	46	9.0000
::d	chr17:29623081-29623317(+)$1	236	68	71	9.0000
e]d	chr7:104752960-104753191(-)$1	231	68	71	9.0000
h!!	chr18:2656154-2656423(+)$1	269	25	28	9.0000
CLL	chr17:29631605-29631859(+)$1	254	25	28	9.0000
DDD	chr17:29622331-29622589(+)$1	258	27	30	9.0000
"""	chr7:6071032-6071277(-)$1	245	7	10	9.0000
ooh	chr17:29622217-29622487(+)$1	270	141	144	9.0000
::c	chr7:104753296-104753543(-)$1	247	2	5	9.0000

#DB
(((	chr7:104752274-104752544(-)$1	1	41	44	9.0000
(((	chr21:46281077-46281311(-)$1	1	146	149	9.0000
(((	chr1:155658049-155658346(-)$1	1	15	18	9.0000
(((	chr21:46281537-46281788(-)$1	1	6	9	9.0000
..(	chr7:104753068-104753344(-)$1	1	111	114	9.0000
...	chr3:99567019-99567379(+)$1	1	43	46	9.0000
..(	chr7:6075005-6075275(-)$1	1	60	63	9.0000
.))	chr17:29632043-29632288(+)$1	1	27	30	9.0000
.((	chr7:104752680-104752944(-)$1	1	13	16	9.0000
)..	chr3:99567695-99567949(+)$1	1	36	39	9.0000
(.(	chr5:137688299-137688597(+)$1	1	215	218	9.0000
((.	chr12:72255091-72255351(+)$1	1	9	12	9.0000
.((	chr17:43009326-43009531(-)$1	1	1	4	9.0000
..)	chr21:38119981-38120194(+)$1	1	83	86	9.0000
...	chr17:43009320-43009525(-)$1	1	40	43	9.0000
).)	chr17:6829459-6829708(-)$1	1	140	143	9.0000
..(	chr7:104752495-104752757(-)$1	1	11	14	9.0000
...	chr7:104752927-104753160(-)$1	1	37	40	9.0000
(..	chr11:120207732-120208063(+)$1	1	43	46	9.0000
..)	chr3:47324376-47324602(+)$1	1	76	79	9.0000
(((	chr7:6074940-6075205(-)$1	1	75	78	9.0000
..)	chr21:38119994-38120204(+)$1	1	70	73	9.0000
)).	chr7:104752833-104753078(-)$1	1	105	108	9.0000
.((	chr7:104752577-104752880(-)$1	1	11	14	9.0000
)).	chr15:28508123-28508384(-)$1	1	72	75	9.0000
(..	chr6:170844171-170844435(-)$1	1	12	15	9.0000
...	chr17:29623014-29623268(+)$1	1	45	48	9.0000
...	chr7:6075119-6075377(-)$1	1	2	5	9.0000
)))	chr3:99549283-99549558(+)$1	1	178	181	9.0000
(..	chr17:29622089-29622383(+)$1	1	11	14	9.0000
..)	chr10:90580133-90580359(+)$1	1	124	127	9.0000
(..	chr17:29632117-29632359(+)$1	1	41	44	9.0000
...	chr20:30947459-30947681(+)$1	1	4	7	9.0000
.((	chr19:2199725-2199994(+)$1	1	55	58	9.0000
(.(	chr3:99567346-99567589(+)$1	1	205	208	9.0000
(((	chr1:225597989-225598219(-)$1	1	23	26	9.0000
)))	chr16:2028578-2028786(+)$1	1	45	48	9.0000
(((	chr17:29632440-29632688(+)$1	1	21	24	9.0000
)).	chr17:29632280-29632538(+)$1	1	41	44	9.0000
)..	chr7:6071077-6071356(-)$1	1	36	39	9.0000
(((	chr17:29632020-29632243(+)$1	1	50	53	9.0000
)).	chr15:28508184-28508421(-)$1	1	109	112	9.0000
...	chr17:29632159-29632448(+)$1	1	32	35	9.0000
..(	chr17:29632338-29632613(+)$1	1	0	3	9.0000
..)	chrX:41193696-41193954(+)$1	1	121	124	9.0000
(..	chr7:6075250-6075476(-)$1	1	19	22	9.0000
..(	chr17:29622563-29622811(+)$1	1	5	8	9.0000
...	chr17:29631938-29632178(+)$1	1	6	9	9.0000
.((	chr17:29622629-29622937(+)$1	1	7	10	9.0000
.))	chr7:104752407-104752657(-)$1	1	43	46	9.0000
..(	chr17:29623081-29623317(+)$1	1	68	71	9.0000
).)	chr7:104752960-104753191(-)$1	1	68	71	9.0000
(..	chr18:2656154-2656423(+)$1	1	25	28	9.0000
(..	chr17:29631605-29631859(+)$1	1	25	28	9.0000
(((	chr17:29622331-29622589(+)$1	1	27	30	9.0000
...	chr7:6071032-6071277(-)$1	1	7	10	9.0000
..)	chr17:29622217-29622487(+)$1	1	141	144	9.0000
..(	chr7:104753296-104753543(-)$1	1	2	5	9.0000

#PSSM
A : 0.93	a : 0.06	
A : 0.93	a : 0.06	
G : 0.89	g : 0.10	

#score	522.0000000000001
#seq	58
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_UTR_m1_run2.nuc.txt

#NT
UGA	chr19:54971678-54971949(+)$1	271	49	52	9.0000
UGA	chr11:122929515-122929717(-)$1	202	6	9	9.0000
UGA	chr18:47017972-47018186(-)$1	214	93	96	9.0000
UGA	chr11:75111377-75111607(+)$1	230	63	66	9.0000
UGA	chr6:31802967-31803197(+)$1	230	11	14	9.0000
UGA	chr19:41271110-41271360(+)$1	250	32	35	9.0000
UGA	chr17:27047496-27047718(+)$1	222	78	81	9.0000
UGA	chr7:106809382-106809695(+)$1	313	37	40	9.0000
UGA	chr17:8076725-8076952(-)$1	227	17	20	9.0000
UGA	chr11:93464065-93464274(-)$1	209	58	61	9.0000
UGA	chr16:23478554-23478842(-)$1	288	39	42	9.0000
UGA	chr17:8076752-8076957(-)$1	205	22	25	9.0000
UGA	chr6:31802964-31803167(+)$1	203	14	17	9.0000
UGA	chr19:49605362-49605605(+)$1	243	31	34	9.0000
UGA	chr3:186330775-186331086(+)$1	311	156	159	9.0000
UGA	chr17:48827967-48828254(+)$1	287	15	18	9.0000
uga	chr17:8076709-8076913(-)$1	204	62	65	9.0000
UGA	chr1:42643255-42643525(-)$1	270	5	8	9.0000
UGA	chr19:49993154-49993363(+)$1	209	75	78	9.0000
UGA	chr5:137685007-137685289(+)$1	282	4	7	9.0000
UGA	chr19:49606565-49606838(+)$1	273	107	110	9.0000
UGA	chr16:1413724-1413989(-)$1	265	169	172	9.0000
UGA	chr19:41271010-41271249(+)$1	239	36	39	9.0000
UGA	chr11:75111357-75111577(+)$1	220	13	16	9.0000
UGA	chr17:42401880-42402159(-)$1	279	38	41	9.0000
UGA	chr7:5569351-5569625(-)$1	274	85	88	9.0000
UGA	chr12:56991291-56991554(-)$1	263	33	36	9.0000
UGA	chr14:70238174-70238467(+)$1	293	178	181	9.0000
uga	chr17:72912792-72913089(-)$1	297	32	35	9.0000
UGA	chr22:19929020-19929366(-)$1	346	200	203	9.0000
UGA	chr11:122929963-122930184(-)$1	221	50	53	9.0000
UGA	chr15:93426497-93426753(+)$1	256	220	223	9.0000
UGA	chr1:249151853-249152142(-)$1	289	19	22	9.0000
UGA	chr5:180670207-180670479(-)$1	272	107	110	9.0000
uga	chr17:8076658-8076902(-)$1	244	51	54	9.0000
UGA	chr2:21266704-21267036(-)$1	332	114	117	9.0000
UGA	chr16:1419954-1420253(-)$1	299	42	45	9.0000
UGA	chr1:28832474-28832697(+)$1	223	129	132	9.0000
UGA	chr6:31804756-31804974(+)$1	218	40	43	9.0000
UGA	chr5:85916233-85916486(+)$1	253	20	23	9.0000
UGA	chr11:93464041-93464252(-)$1	211	36	39	9.0000
UGA	chr15:93426553-93426923(+)$1	370	164	167	9.0000
uga	chr3:13461567-13461855(-)$1	288	114	117	9.0000
UGA	chr17:37076016-37076317(+)$1	301	94	97	9.0000
UGA	chr8:30669826-30670090(-)$1	264	202	205	9.0000
UGA	chrX:154003010-154003284(+)$1	274	25	28	9.0000
UGA	chr2:158731844-158732189(-)$1	345	29	32	9.0000
UGA	chr17:27047518-27047734(+)$1	216	56	59	9.0000
UGA	chr1:228327931-228328179(+)$1	248	134	137	9.0000
UGA	chr17:73775186-73775491(-)$1	305	51	54	9.0000
UGA	chr6:31508813-31509030(-)$1	217	35	38	9.0000
UGA	chr19:49605901-49606140(+)$1	239	6	9	9.0000
UGA	chr17:76124556-76124809(-)$1	253	71	74	9.0000
UGA	chr11:5275503-5275744(-)$1	241	36	39	9.0000
uga	chr1:178994961-178995236(+)$1	275	167	170	9.0000
UGA	chr6:31508840-31509044(-)$1	204	49	52	9.0000
UGA	chr3:12881714-12881964(-)$1	250	2	5	9.0000
UGA	chr6:31804748-31804956(+)$1	208	48	51	9.0000
UGA	chr3:133467155-133467387(+)$1	232	4	7	9.0000
UGA	chr18:47017986-47018197(-)$1	211	9	12	9.0000
UGA	chr5:179050127-179050360(-)$1	233	227	230	9.0000
UGA	chr13:26828211-26828521(+)$1	310	53	56	9.0000
UGA	chr12:7052897-7053144(+)$1	247	148	151	9.0000
UGA	chr1:249151745-249152050(-)$1	305	46	49	9.0000
UGA	chr16:48418955-48419243(-)$1	288	146	149	9.0000
Uga	chr8:33370956-33371162(+)$1	206	34	37	9.0000
UGA	chr12:125398883-125399120(-)$1	237	107	110	9.0000
UGA	chr15:83424598-83424906(+)$1	308	17	20	9.0000
UGA	chr11:116707960-116708207(-)$1	247	14	17	9.0000
UGA	chr19:59055857-59056094(+)$1	237	39	42	9.0000
UGA	chr6:31937067-31937359(+)$1	292	27	30	9.0000
UGA	chr16:89981290-89981535(+)$1	245	143	146	9.0000
UGA	chr6:31508844-31509054(-)$1	210	59	62	9.0000
UGA	chr11:75111426-75111679(+)$1	253	14	17	9.0000
UGA	chr22:20067945-20068242(+)$1	297	96	99	9.0000
UGA	chr6:33171653-33171900(+)$1	247	114	117	9.0000
UGA	chr9:123638030-123638293(-)$1	263	6	9	9.0000
UGA	chr16:89980231-89980509(+)$1	278	74	77	9.0000
UGA	chr16:30107137-30107408(-)$1	271	93	96	9.0000
Uga	chr8:33370962-33371194(+)$1	232	28	31	9.0000
UGA	chr6:74230388-74230636(-)$1	248	9	12	9.0000
UGA	chr20:62330505-62330761(-)$1	256	90	93	9.0000
UGA	chr15:93426437-93426697(+)$1	260	41	44	9.0000
UGA	chr19:49606058-49606297(+)$1	239	23	26	9.0000
UGA	chr2:85770357-85770648(+)$1	291	31	34	9.0000
UGA	chr11:122929517-122929782(-)$1	265	48	51	9.0000
UGA	chr19:49993167-49993402(+)$1	235	62	65	9.0000
UGA	chr5:85916223-85916433(+)$1	210	30	33	9.0000
UGA	chr12:125398972-125399243(-)$1	271	2	5	9.0000
UGA	chr19:575249-575520(+)$1	271	59	62	9.0000
UGA	chr17:27050620-27050857(+)$1	237	7	10	9.0000
uga	chr11:47379918-47380227(-)$1	309	40	43	9.0000
Uga	chr8:33370931-33371148(+)$1	217	59	62	9.0000
UGA	chr16:89627003-89627219(+)$1	216	11	14	9.0000
UGA	chr1:155658321-155658569(-)$1	248	115	118	9.0000
UGA	chr18:47017963-47018172(-)$1	209	79	82	9.0000
UGA	chr3:51533787-51534066(-)$1	279	29	32	9.0000
uga	chr17:8076713-8076925(-)$1	212	74	77	9.0000
UGA	chr6:161574463-161574706(-)$1	243	7	10	9.0000

#otherMatches

#Struct PSSM
dd[	chr19:54971466-54971695(+)$1	229	14	17	9.0000
cc]	chr19:54971678-54971949(+)$1	271	49	52	9.0000
c!!	chr11:122929515-122929717(-)$1	202	6	9	9.0000
"bb	chr18:47017972-47018186(-)$1	214	93	96	9.0000
"bb	chr11:75111377-75111607(+)$1	230	63	66	9.0000
ALL	chr6:31802967-31803197(+)$1	230	11	14	9.0000
DDD	chr19:41271110-41271360(+)$1	250	32	35	9.0000
!a[	chr17:27047496-27047718(+)$1	222	78	81	9.0000
iii	chr7:106809382-106809695(+)$1	313	37	40	9.0000
ccm	chr17:8076725-8076952(-)$1	227	17	20	9.0000
hhh	chr11:93464065-93464274(-)$1	209	58	61	9.0000
nnn	chr16:23478554-23478842(-)$1	288	39	42	9.0000
FFF	chr17:8076752-8076957(-)$1	205	22	25	9.0000
GGG	chr6:31802964-31803167(+)$1	203	14	17	9.0000
eee	chr19:49605362-49605605(+)$1	243	31	34	9.0000
ddd	chr3:186330775-186331086(+)$1	311	156	159	9.0000
CKK	chr17:48827967-48828254(+)$1	287	15	18	9.0000
ddd	chr17:8076709-8076913(-)$1	204	62	65	9.0000
EEE	chr1:42643255-42643525(-)$1	270	5	8	9.0000
eee	chr19:49993154-49993363(+)$1	209	75	78	9.0000
D{C	chr5:137685007-137685289(+)$1	282	4	7	9.0000
dd4	chr19:49606565-49606838(+)$1	273	107	110	9.0000
bb!	chr16:1413724-1413989(-)$1	265	169	172	9.0000
"dd	chr19:41271010-41271249(+)$1	239	36	39	9.0000
HEE	chr11:75111357-75111577(+)$1	220	13	16	9.0000
EE{	chr17:42401880-42402159(-)$1	279	38	41	9.0000
:::	chr7:5569351-5569625(-)$1	274	85	88	9.0000
2ee	chr12:56991291-56991554(-)$1	263	33	36	9.0000
iii	chr14:70238174-70238467(+)$1	293	178	181	9.0000
[ff	chr17:72912792-72913089(-)$1	297	32	35	9.0000
BB?	chr22:19929020-19929366(-)$1	346	200	203	9.0000
E:G	chr11:122929963-122930184(-)$1	221	50	53	9.0000
h33	chr15:93426497-93426753(+)$1	256	220	223	9.0000
ddd	chr1:249151853-249152142(-)$1	289	19	22	9.0000
g((	chr5:180670207-180670479(-)$1	272	107	110	9.0000
:::	chr17:8076658-8076902(-)$1	244	51	54	9.0000
ee]	chr2:21266704-21267036(-)$1	332	114	117	9.0000
{DD	chr16:1419954-1420253(-)$1	299	42	45	9.0000
f::	chr1:28832474-28832697(+)$1	223	129	132	9.0000
55f	chr6:31804756-31804974(+)$1	218	40	43	9.0000
xxx	chr5:85916233-85916486(+)$1	253	20	23	9.0000
ooo	chr11:93464041-93464252(-)$1	211	36	39	9.0000
h33	chr15:93426553-93426923(+)$1	370	164	167	9.0000
eee	chr3:13461567-13461855(-)$1	288	114	117	9.0000
c[d	chr17:37076016-37076317(+)$1	301	94	97	9.0000
ee[	chr8:30669826-30670090(-)$1	264	202	205	9.0000
ooo	chrX:154003010-154003284(+)$1	274	25	28	9.0000
$bb	chr2:158731844-158732189(-)$1	345	29	32	9.0000
!a[	chr17:27047518-27047734(+)$1	216	56	59	9.0000
dd[	chr1:228327931-228328179(+)$1	248	134	137	9.0000
eee	chr17:73775186-73775491(-)$1	305	51	54	9.0000
dmm	chr6:31508813-31509030(-)$1	217	35	38	9.0000
HH:	chr19:49605901-49606140(+)$1	239	6	9	9.0000
nnn	chr17:76124556-76124809(-)$1	253	71	74	9.0000
$ee	chr11:5275503-5275744(-)$1	241	36	39	9.0000
ff[	chr1:178994961-178995236(+)$1	275	167	170	9.0000
a[a	chr6:31508840-31509044(-)$1	204	49	52	9.0000
GGG	chr3:12881714-12881964(-)$1	250	2	5	9.0000
55f	chr6:31804748-31804956(+)$1	208	48	51	9.0000
hhh	chr3:133467155-133467387(+)$1	232	4	7	9.0000
LLL	chr18:47017986-47018197(-)$1	211	9	12	9.0000
D::	chr5:179050127-179050360(-)$1	233	227	230	9.0000
ngg	chr13:26828211-26828521(+)$1	310	53	56	9.0000
hhh	chr12:7052897-7053144(+)$1	247	148	151	9.0000
:HH	chr1:249151745-249152050(-)$1	305	46	49	9.0000
dd!	chr16:48418955-48419243(-)$1	288	146	149	9.0000
ooo	chr8:33370956-33371162(+)$1	206	34	37	9.0000
d[d	chr12:125398883-125399120(-)$1	237	107	110	9.0000
lll	chr15:83424598-83424906(+)$1	308	17	20	9.0000
$hh	chr11:116707960-116708207(-)$1	247	14	17	9.0000
ggg	chr19:59055857-59056094(+)$1	237	39	42	9.0000
d[e	chr6:31937067-31937359(+)$1	292	27	30	9.0000
:::	chr16:89981290-89981535(+)$1	245	143	146	9.0000
b22	chr6:31508844-31509054(-)$1	210	59	62	9.0000
"bb	chr11:75111426-75111679(+)$1	253	14	17	9.0000
lee	chr22:20067945-20068242(+)$1	297	96	99	9.0000
ddd	chr6:33171653-33171900(+)$1	247	114	117	9.0000
eee	chr9:123638030-123638293(-)$1	263	6	9	9.0000
"""	chr16:89980231-89980509(+)$1	278	74	77	9.0000
dd:	chr16:30107137-30107408(-)$1	271	93	96	9.0000
ooo	chr8:33370962-33371194(+)$1	232	28	31	9.0000
B{C	chr6:74230388-74230636(-)$1	248	9	12	9.0000
:::	chr20:62330505-62330761(-)$1	256	90	93	9.0000
GKK	chr15:93426437-93426697(+)$1	260	41	44	9.0000
:A{	chr19:49606058-49606297(+)$1	239	23	26	9.0000
qff	chr2:85770357-85770648(+)$1	291	31	34	9.0000
uuu	chr11:122929517-122929782(-)$1	265	48	51	9.0000
eee	chr19:49993167-49993402(+)$1	235	62	65	9.0000
xxx	chr5:85916223-85916433(+)$1	210	30	33	9.0000
:::	chr12:125398972-125399243(-)$1	271	2	5	9.0000
fff	chr19:575249-575520(+)$1	271	59	62	9.0000
:EE	chr17:27050620-27050857(+)$1	237	7	10	9.0000
C::	chr11:47379918-47380227(-)$1	309	40	43	9.0000
ooo	chr8:33370931-33371148(+)$1	217	59	62	9.0000
ggg	chr16:89627003-89627219(+)$1	216	11	14	9.0000
GGY	chr1:155658321-155658569(-)$1	248	115	118	9.0000
"bb	chr18:47017963-47018172(-)$1	209	79	82	9.0000
:::	chr3:51533787-51534066(-)$1	279	29	32	9.0000
MMM	chr17:8076713-8076925(-)$1	212	74	77	9.0000
:::	chr6:161574463-161574706(-)$1	243	7	10	9.0000

#DB
((.	chr19:54971466-54971695(+)$1	1	14	17	9.0000
)).	chr19:54971678-54971949(+)$1	1	49	52	9.0000
(..	chr11:122929515-122929717(-)$1	1	6	9	9.0000
.((	chr18:47017972-47018186(-)$1	1	93	96	9.0000
.((	chr11:75111377-75111607(+)$1	1	63	66	9.0000
(..	chr6:31802967-31803197(+)$1	1	11	14	9.0000
(((	chr19:41271110-41271360(+)$1	1	32	35	9.0000
.(.	chr17:27047496-27047718(+)$1	1	78	81	9.0000
)))	chr7:106809382-106809695(+)$1	1	37	40	9.0000
((.	chr17:8076725-8076952(-)$1	1	17	20	9.0000
)))	chr11:93464065-93464274(-)$1	1	58	61	9.0000
...	chr16:23478554-23478842(-)$1	1	39	42	9.0000
(((	chr17:8076752-8076957(-)$1	1	22	25	9.0000
(((	chr6:31802964-31803167(+)$1	1	14	17	9.0000
(((	chr19:49605362-49605605(+)$1	1	31	34	9.0000
(((	chr3:186330775-186331086(+)$1	1	156	159	9.0000
(..	chr17:48827967-48828254(+)$1	1	15	18	9.0000
)))	chr17:8076709-8076913(-)$1	1	62	65	9.0000
(((	chr1:42643255-42643525(-)$1	1	5	8	9.0000
)))	chr19:49993154-49993363(+)$1	1	75	78	9.0000
(.(	chr5:137685007-137685289(+)$1	1	4	7	9.0000
)).	chr19:49606565-49606838(+)$1	1	107	110	9.0000
((.	chr16:1413724-1413989(-)$1	1	169	172	9.0000
.((	chr19:41271010-41271249(+)$1	1	36	39	9.0000
(((	chr11:75111357-75111577(+)$1	1	13	16	9.0000
((.	chr17:42401880-42402159(-)$1	1	38	41	9.0000
...	chr7:5569351-5569625(-)$1	1	85	88	9.0000
.))	chr12:56991291-56991554(-)$1	1	33	36	9.0000
(((	chr14:70238174-70238467(+)$1	1	178	181	9.0000
.((	chr17:72912792-72913089(-)$1	1	32	35	9.0000
)).	chr22:19929020-19929366(-)$1	1	200	203	9.0000
(.(	chr11:122929963-122930184(-)$1	1	50	53	9.0000
)..	chr15:93426497-93426753(+)$1	1	220	223	9.0000
)))	chr1:249151853-249152142(-)$1	1	19	22	9.0000
(..	chr5:180670207-180670479(-)$1	1	107	110	9.0000
...	chr17:8076658-8076902(-)$1	1	51	54	9.0000
)).	chr2:21266704-21267036(-)$1	1	114	117	9.0000
.((	chr16:1419954-1420253(-)$1	1	42	45	9.0000
)..	chr1:28832474-28832697(+)$1	1	129	132	9.0000
..)	chr6:31804756-31804974(+)$1	1	40	43	9.0000
...	chr5:85916233-85916486(+)$1	1	20	23	9.0000
...	chr11:93464041-93464252(-)$1	1	36	39	9.0000
)..	chr15:93426553-93426923(+)$1	1	164	167	9.0000
)))	chr3:13461567-13461855(-)$1	1	114	117	9.0000
(.(	chr17:37076016-37076317(+)$1	1	94	97	9.0000
((.	chr8:30669826-30670090(-)$1	1	202	205	9.0000
...	chrX:154003010-154003284(+)$1	1	25	28	9.0000
.((	chr2:158731844-158732189(-)$1	1	29	32	9.0000
.(.	chr17:27047518-27047734(+)$1	1	56	59	9.0000
((.	chr1:228327931-228328179(+)$1	1	134	137	9.0000
(((	chr17:73775186-73775491(-)$1	1	51	54	9.0000
(..	chr6:31508813-31509030(-)$1	1	35	38	9.0000
((.	chr19:49605901-49606140(+)$1	1	6	9	9.0000
...	chr17:76124556-76124809(-)$1	1	71	74	9.0000
.((	chr11:5275503-5275744(-)$1	1	36	39	9.0000
((.	chr1:178994961-178995236(+)$1	1	167	170	9.0000
(.(	chr6:31508840-31509044(-)$1	1	49	52	9.0000
(((	chr3:12881714-12881964(-)$1	1	2	5	9.0000
..)	chr6:31804748-31804956(+)$1	1	48	51	9.0000
(((	chr3:133467155-133467387(+)$1	1	4	7	9.0000
...	chr18:47017986-47018197(-)$1	1	9	12	9.0000
)..	chr5:179050127-179050360(-)$1	1	227	230	9.0000
.))	chr13:26828211-26828521(+)$1	1	53	56	9.0000
(((	chr12:7052897-7053144(+)$1	1	148	151	9.0000
.((	chr1:249151745-249152050(-)$1	1	46	49	9.0000
((.	chr16:48418955-48419243(-)$1	1	146	149	9.0000
...	chr8:33370956-33371162(+)$1	1	34	37	9.0000
(.(	chr12:125398883-125399120(-)$1	1	107	110	9.0000
...	chr15:83424598-83424906(+)$1	1	17	20	9.0000
.((	chr11:116707960-116708207(-)$1	1	14	17	9.0000
(((	chr19:59055857-59056094(+)$1	1	39	42	9.0000
(.(	chr6:31937067-31937359(+)$1	1	27	30	9.0000
...	chr16:89981290-89981535(+)$1	1	143	146	9.0000
)..	chr6:31508844-31509054(-)$1	1	59	62	9.0000
.((	chr11:75111426-75111679(+)$1	1	14	17	9.0000
.))	chr22:20067945-20068242(+)$1	1	96	99	9.0000
)))	chr6:33171653-33171900(+)$1	1	114	117	9.0000
(((	chr9:123638030-123638293(-)$1	1	6	9	9.0000
...	chr16:89980231-89980509(+)$1	1	74	77	9.0000
)).	chr16:30107137-30107408(-)$1	1	93	96	9.0000
...	chr8:33370962-33371194(+)$1	1	28	31	9.0000
(.(	chr6:74230388-74230636(-)$1	1	9	12	9.0000
...	chr20:62330505-62330761(-)$1	1	90	93	9.0000
(..	chr15:93426437-93426697(+)$1	1	41	44	9.0000
.(.	chr19:49606058-49606297(+)$1	1	23	26	9.0000
.))	chr2:85770357-85770648(+)$1	1	31	34	9.0000
...	chr11:122929517-122929782(-)$1	1	48	51	9.0000
)))	chr19:49993167-49993402(+)$1	1	62	65	9.0000
...	chr5:85916223-85916433(+)$1	1	30	33	9.0000
...	chr12:125398972-125399243(-)$1	1	2	5	9.0000
(((	chr19:575249-575520(+)$1	1	59	62	9.0000
.((	chr17:27050620-27050857(+)$1	1	7	10	9.0000
(..	chr11:47379918-47380227(-)$1	1	40	43	9.0000
...	chr8:33370931-33371148(+)$1	1	59	62	9.0000
(((	chr16:89627003-89627219(+)$1	1	11	14	9.0000
)).	chr1:155658321-155658569(-)$1	1	115	118	9.0000
.((	chr18:47017963-47018172(-)$1	1	79	82	9.0000
...	chr3:51533787-51534066(-)$1	1	29	32	9.0000
...	chr17:8076713-8076925(-)$1	1	74	77	9.0000
...	chr6:161574463-161574706(-)$1	1	7	10	9.0000

#PSSM
U : 0.93	u : 0.07	
G : 0.90	g : 0.09	
A : 0.90	a : 0.09	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_CDS_m1_run1.nuc.txt

#NT
CUUGCUCCUUCUCCUCC	chr3:99569631-99569892(+)$1	261	230	247	23.6000
UUUUCUUCUUCUUCUUC	chr19:45911819-45912145(-)$1	326	270	287	32.8000
CUUCUUUCUUCUCCCUC	chr5:140967703-140967969(-)$1	266	117	134	23.8000
AUUGCUUCCUCUCCUUC	chr7:128457626-128457998(+)$1	372	300	317	23.4000
UUAGCUUCUUCUUCUUG	chr3:99568178-99568418(+)$1	240	209	226	23.8000
cuuccuuccacuucuuc	chr5:176917483-176917826(-)$1	343	192	209	26.0000
cuuucuucuucuuuguc	chr16:15696267-15696601(-)$1	334	132	149	27.4000
CUUCCUUCUUUUACUUC	chr13:39587112-39587378(-)$1	266	78	95	26.2000
CUUUGGGCUUCUUCCUC	chr19:45911945-45912205(-)$1	260	207	224	22.0000
CUUUUCCCUUUUUCUUU	chr11:63657552-63657837(+)$1	285	107	124	19.6000
CUUUUUUCCUCUUCUUC	chr19:45912059-45912320(-)$1	261	97	114	29.2000
CUUUCUUCUUUUCCAUC	chr17:26937529-26937805(-)$1	276	11	28	26.2000
cuuucuucuucuucuuc	chr19:45912364-45912598(-)$1	234	87	104	35.6000
UUUCCUUUCUCUUCUUC	chr3:99568718-99569008(+)$1	290	65	82	23.2000
CUUUCUUCUUUUCCAUC	chr17:26937612-26937937(-)$1	325	143	160	26.2000
cuuucuucuucuucuuc	chr19:45912464-45912723(-)$1	259	212	229	35.6000
UUAGCUUCUUCUUCUUG	chr3:99568247-99568506(+)$1	259	140	157	23.8000
CUUUCUUCGUCUUCUUU	chr19:45912234-45912491(-)$1	257	97	114	28.8000
CUUUCUGCUAAUUCUUU	chr11:124056516-124056787(+)$1	271	89	106	22.4000
CUUUCUCAUUCUUCCUG	chr1:180042785-180043100(+)$1	315	74	91	23.0000
CUGUCAGCUCCUUCUUC	chrX:140995271-140995566(+)$1	295	251	268	21.8000
UUUUCUUCUUCUUCUUC	chr19:45911700-45911969(-)$1	269	94	111	32.8000
cucucuuguucuucuag	chr5:112227427-112227712(-)$1	285	47	64	20.8000
CUGUCAGCUCCUUCUUC	chrX:140995366-140995620(+)$1	254	156	173	21.8000

#otherMatches

#Struct PSSM
^^^^^^^^^^^^^^^^^	chr5:112227519-112227848(-)$1	329	100	117	22.0000
]eeeee:::::::::::	chr3:99569631-99569892(+)$1	261	230	247	23.6000
:::::::::::::::::	chr19:45911819-45912145(-)$1	326	270	287	32.8000
:::::::::::::::::	chr5:140967703-140967969(-)$1	266	117	134	23.8000
ee:::ffffffpppppp	chr7:128457626-128457998(+)$1	372	300	317	23.4000
:::eeeeeqqqqqqqqe	chr3:99568178-99568418(+)$1	240	209	226	23.8000
^^^^^^^^^^^^^^^^^	chr5:176917483-176917826(-)$1	343	192	209	26.0000
:::::::::::::bb[a	chr16:15696267-15696601(-)$1	334	132	149	27.4000
:::::::::::::::::	chr13:39587112-39587378(-)$1	266	78	95	26.2000
=========ccc[bb[b	chr19:45911945-45912205(-)$1	260	207	224	22.0000
::::JJJJJJJJJJ:::	chr11:63657552-63657837(+)$1	285	107	124	19.6000
^^^^^^^^^^^^^^^^^	chr19:45912059-45912320(-)$1	261	97	114	29.2000
^^^^^^^^^^^^^^^^^	chr17:26937529-26937805(-)$1	276	11	28	26.2000
:::::::::::::::::	chr19:45912364-45912598(-)$1	234	87	104	35.6000
ffffff]bb::::::::	chr3:99568718-99569008(+)$1	290	65	82	23.2000
^^^^^^^^^^^^^^^^^	chr17:26937612-26937937(-)$1	325	143	160	26.2000
:::::::::::::::::	chr19:45912464-45912723(-)$1	259	212	229	35.6000
FFFeeeeeqqqqqqqqe	chr3:99568247-99568506(+)$1	259	140	157	23.8000
^^^^^^^^^^^^^^^^^	chr19:45912234-45912491(-)$1	257	97	114	28.8000
bnnnnnbb::eeeeevv	chr11:124056516-124056787(+)$1	271	89	106	22.4000
:::::::::::::::::	chr1:180042785-180043100(+)$1	315	74	91	23.0000
ccc22bb]=========	chrX:140995271-140995566(+)$1	295	251	268	21.8000
:::::::::::::::::	chr19:45911700-45911969(-)$1	269	94	111	32.8000
::::GGGGGGG::::::	chr5:112227427-112227712(-)$1	285	47	64	20.8000
ccc22bb]dddd:::::	chrX:140995366-140995620(+)$1	254	156	173	21.8000

#DB
.................	chr5:112227519-112227848(-)$1	1	100	117	22.0000
.)))))...........	chr3:99569631-99569892(+)$1	1	230	247	23.6000
.................	chr19:45911819-45912145(-)$1	1	270	287	32.8000
.................	chr5:140967703-140967969(-)$1	1	117	134	23.8000
))...((((((......	chr7:128457626-128457998(+)$1	1	300	317	23.4000
...(((((........)	chr3:99568178-99568418(+)$1	1	209	226	23.8000
.................	chr5:176917483-176917826(-)$1	1	192	209	26.0000
.............((.(	chr16:15696267-15696601(-)$1	1	132	149	27.4000
.................	chr13:39587112-39587378(-)$1	1	78	95	26.2000
)))))))))(((.((.(	chr19:45911945-45912205(-)$1	1	207	224	22.0000
....((((((((((...	chr11:63657552-63657837(+)$1	1	107	124	19.6000
.................	chr19:45912059-45912320(-)$1	1	97	114	29.2000
.................	chr17:26937529-26937805(-)$1	1	11	28	26.2000
.................	chr19:45912364-45912598(-)$1	1	87	104	35.6000
)))))).))........	chr3:99568718-99569008(+)$1	1	65	82	23.2000
.................	chr17:26937612-26937937(-)$1	1	143	160	26.2000
.................	chr19:45912464-45912723(-)$1	1	212	229	35.6000
)))(((((........)	chr3:99568247-99568506(+)$1	1	140	157	23.8000
.................	chr19:45912234-45912491(-)$1	1	97	114	28.8000
(.....))..(((((..	chr11:124056516-124056787(+)$1	1	89	106	22.4000
.................	chr1:180042785-180043100(+)$1	1	74	91	23.0000
)))..)).)))))))))	chrX:140995271-140995566(+)$1	1	251	268	21.8000
.................	chr19:45911700-45911969(-)$1	1	94	111	32.8000
....(((((((......	chr5:112227427-112227712(-)$1	1	47	64	20.8000
)))..)).)))).....	chrX:140995366-140995620(+)$1	1	156	173	21.8000

#PSSM
C : 0.51	c : 0.24	U : 0.20	A : 0.04	
U : 0.76	u : 0.24	
U : 0.60	u : 0.20	A : 0.08	G : 0.08	c : 0.04	
U : 0.47	u : 0.20	G : 0.16	C : 0.12	c : 0.04	
C : 0.60	c : 0.20	U : 0.12	u : 0.04	G : 0.04	
U : 0.60	u : 0.24	A : 0.08	G : 0.04	C : 0.04	
U : 0.47	u : 0.20	G : 0.16	C : 0.12	c : 0.04	
C : 0.68	c : 0.16	u : 0.04	U : 0.04	A : 0.04	g : 0.04	
U : 0.60	u : 0.20	C : 0.12	c : 0.04	G : 0.04	
U : 0.64	u : 0.20	C : 0.08	a : 0.04	A : 0.04	
C : 0.55	c : 0.24	U : 0.16	A : 0.04	
U : 0.76	u : 0.24	
U : 0.51	u : 0.24	C : 0.20	A : 0.04	
C : 0.76	c : 0.20	u : 0.04	
U : 0.55	u : 0.20	C : 0.12	A : 0.08	g : 0.04	
U : 0.72	u : 0.16	c : 0.04	C : 0.04	a : 0.04	
C : 0.51	c : 0.20	G : 0.12	U : 0.12	g : 0.04	

#score	641.8000000000004
#seq	25
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_CDS_m3_run2.nuc.txt

#NT
CCU	chr4:69202672-69203012(-)$1	340	220	223	8.9999
CCU	chr22:24313601-24313851(-)$1	250	32	35	8.9999
CCU	chr1:32797662-32797947(+)$1	285	20	23	8.9999
CCU	chr10:79800278-79800495(+)$1	217	210	213	8.9999
CCU	chr12:42707406-42707669(-)$1	263	139	142	8.9999
CCU	chr11:2154304-2154508(-)$1	204	27	30	8.9999
CCU	chr2:232326575-232326829(-)$1	254	110	113	8.9999
CCU	chr14:56083178-56083431(+)$1	253	117	120	8.9999
CCU	chr11:2154324-2154531(-)$1	207	0	3	8.9999
CCU	chr12:76449749-76449960(-)$1	211	91	94	8.9999
CCU	chr2:32641087-32641327(+)$1	240	53	56	8.9999
CCU	chr6:44218183-44218424(+)$1	241	54	57	8.9999
CCU	chr6:26055947-26056206(-)$1	259	162	165	8.9999
CCU	chr11:2154724-2154949(-)$1	225	124	127	8.9999
CCU	chr17:4575261-4575492(-)$1	231	92	95	8.9999
CCU	chr2:99992779-99993162(+)$1	383	68	71	8.9999
CCU	chr11:2156553-2156763(-)$1	210	50	53	8.9999
CCU	chr11:2156567-2156787(-)$1	220	74	77	8.9999
CCU	chr11:2154185-2154391(-)$1	206	6	9	8.9999
CCU	chr11:2154293-2154497(-)$1	204	16	19	8.9999
CCU	chr11:2154308-2154513(-)$1	205	32	35	8.9999
CCU	chr1:67891682-67891955(-)$1	273	10	13	8.9999
CCU	chr14:31619171-31619434(-)$1	263	122	125	8.9999
CCU	chr12:54676516-54676759(+)$1	243	174	177	8.9999
CCU	chr6:7581496-7581744(+)$1	248	62	65	8.9999
CCU	chr11:2154271-2154478(-)$1	207	11	14	8.9999
CCU	chr7:91622185-91622470(+)$1	285	158	161	8.9999
CCU	chr12:76448733-76448970(-)$1	237	54	57	8.9999
CCU	chr21:47612379-47612592(-)$1	213	29	32	8.9999
CCU	chr17:45734181-45734445(+)$1	264	77	80	8.9999
CCU	chr12:6710749-6711032(-)$1	283	3	6	8.9999
CCU	chr18:47017829-47018062(-)$1	233	101	104	8.9999
CCU	chr2:167142742-167143014(-)$1	272	111	114	8.9999
CCU	chr9:19376395-19376623(-)$1	228	29	32	8.9999
CCU	chr17:78302062-78302369(+)$1	307	177	180	8.9999
CCU	chr11:2154313-2154524(-)$1	211	43	46	8.9999
CCU	chr11:2154120-2154326(-)$1	206	37	40	8.9999
CCU	chr3:121412757-121413036(-)$1	279	83	86	8.9999
CCU	chr22:50297581-50297870(-)$1	289	37	40	8.9999
CCU	chr5:138657522-138657821(+)$1	299	129	132	8.9999
CCU	chr11:2154786-2154992(-)$1	206	2	5	8.9999
CCU	chr9:139734531-139734765(+)$1	234	9	12	8.9999
CCU	chr9:100777599-100777854(+)$1	255	6	9	8.9999
CCU	chr6:44218110-44218349(+)$1	239	127	130	8.9999
CCU	chr19:15383749-15384045(-)$1	296	10	13	8.9999
CCU	chr11:2154792-2154995(-)$1	203	0	3	8.9999
CCU	chr9:712037-712319(+)$1	282	119	122	8.9999
CCU	chr14:56083133-56083378(+)$1	245	162	165	8.9999
CCU	chr6:157527418-157527748(+)$1	330	24	27	8.9999
CCU	chr3:42680767-42681016(+)$1	249	88	91	8.9999
CCU	chr13:20207953-20208202(+)$1	249	74	77	8.9999
CCU	chr22:24313683-24313904(-)$1	221	21	24	8.9999
CCU	chr12:76453493-76453740(-)$1	247	58	61	8.9999
CCU	chr22:24313481-24313737(-)$1	256	71	74	8.9999
CCU	chr11:2156546-2156749(-)$1	203	36	39	8.9999
CCU	chr17:65850554-65850821(+)$1	267	145	148	8.9999
CCU	chr5:37000477-37000771(+)$1	294	173	176	8.9999
CCU	chr11:2154246-2154457(-)$1	211	50	53	8.9999
CCU	chr5:145523968-145524216(-)$1	248	57	60	8.9999
CCU	chr11:2154650-2154853(-)$1	203	28	31	8.9999
CCU	chr2:242181793-242182043(-)$1	250	0	3	8.9999
CCU	chrX:53616530-53616800(-)$1	270	8	11	8.9999
CCU	chr16:89367065-89367335(-)$1	270	8	11	8.9999
CCU	chr11:2156540-2156743(-)$1	203	30	33	8.9999
CCU	chr6:44219898-44220102(+)$1	204	4	7	8.9999
CCU	chr22:24313656-24313883(-)$1	227	0	3	8.9999
CCU	chr6:56438417-56438761(-)$1	344	3	6	8.9999
CCU	chr8:17822108-17822357(+)$1	249	34	37	8.9999
CCU	chr11:2154140-2154356(-)$1	216	67	70	8.9999
CCU	chr16:72992191-72992437(-)$1	246	1	4	8.9999
CCU	chr6:7579485-7579733(+)$1	248	108	111	8.9999
CCU	chr19:4053825-4054069(-)$1	244	64	67	8.9999
CCU	chr11:2154300-2154504(-)$1	204	23	26	8.9999
CCU	chr20:35236183-35236448(+)$1	265	99	102	8.9999
CCU	chr14:102550933-102551186(-)$1	253	199	202	8.9999
CCU	chr11:35685022-35685303(+)$1	281	199	202	8.9999
CCU	chr17:60108824-60109107(-)$1	283	19	22	8.9999
CCU	chr17:46929766-46930067(+)$1	301	46	49	8.9999
CCU	chr12:123997758-123998017(-)$1	259	43	46	8.9999
CCU	chr11:2154267-2154471(-)$1	204	4	7	8.9999
CCU	chr6:159047631-159047885(+)$1	254	152	155	8.9999
CCU	chr6:144783803-144784047(+)$1	244	0	3	8.9999
CCU	chr2:71653642-71653884(+)$1	242	13	16	8.9999
CCU	chr10:112349550-112349803(+)$1	253	52	55	8.9999
CCU	chr2:71360537-71360807(+)$1	270	35	38	8.9999
CCU	chr11:2156496-2156699(-)$1	203	1	4	8.9999
CCU	chr1:46073906-46074176(+)$1	270	30	33	8.9999
CCU	chr11:2154280-2154482(-)$1	202	1	4	8.9999
CCU	chr14:54416725-54417045(-)$1	320	69	72	8.9999
CCU	chr2:54871356-54871600(+)$1	244	25	28	8.9999
CCU	chr11:2154126-2154330(-)$1	204	41	44	8.9999
CCU	chr20:62324532-62324855(+)$1	323	49	52	8.9999
CCU	chr19:10488971-10489228(-)$1	257	33	36	8.9999
CCU	chr2:135170305-135170597(+)$1	292	0	3	8.9999
CCU	chr15:34651843-34652134(-)$1	291	90	93	8.9999

#otherMatches

#Struct PSSM
:::	chr17:57741103-57741350(+)$1	247	0	3	8.9999
III	chr4:69202672-69203012(-)$1	340	220	223	8.9999
uuu	chr22:24313601-24313851(-)$1	250	32	35	8.9999
HHH	chr1:32797662-32797947(+)$1	285	20	23	8.9999
ccc	chr10:79800278-79800495(+)$1	217	210	213	8.9999
"cc	chr12:42707406-42707669(-)$1	263	139	142	8.9999
mee	chr11:2154304-2154508(-)$1	204	27	30	8.9999
ddd	chr2:232326575-232326829(-)$1	254	110	113	8.9999
:cc	chr14:56083178-56083431(+)$1	253	117	120	8.9999
:::	chr11:2154324-2154531(-)$1	207	0	3	8.9999
b]a	chr12:76449749-76449960(-)$1	211	91	94	8.9999
eee	chr2:32641087-32641327(+)$1	240	53	56	8.9999
C{E	chr6:44218183-44218424(+)$1	241	54	57	8.9999
eee	chr6:26055947-26056206(-)$1	259	162	165	8.9999
bbd	chr11:2154724-2154949(-)$1	225	124	127	8.9999
ddd	chr17:4575261-4575492(-)$1	231	92	95	8.9999
ccc	chr2:99992779-99993162(+)$1	383	68	71	8.9999
G::	chr11:2156553-2156763(-)$1	210	50	53	8.9999
dd2	chr11:2156567-2156787(-)$1	220	74	77	8.9999
EE{	chr11:2154185-2154391(-)$1	206	6	9	8.9999
mee	chr11:2154293-2154497(-)$1	204	16	19	8.9999
mee	chr11:2154308-2154513(-)$1	205	32	35	8.9999
eee	chr1:67891682-67891955(-)$1	273	10	13	8.9999
ddd	chr14:31619171-31619434(-)$1	263	122	125	8.9999
ggg	chr12:54676516-54676759(+)$1	243	174	177	8.9999
:ee	chr6:7581496-7581744(+)$1	248	62	65	8.9999
:::	chr11:2154271-2154478(-)$1	207	11	14	8.9999
ddd	chr7:91622185-91622470(+)$1	285	158	161	8.9999
:::	chr12:76448733-76448970(-)$1	237	54	57	8.9999
HHH	chr21:47612379-47612592(-)$1	213	29	32	8.9999
"""	chr17:45734181-45734445(+)$1	264	77	80	8.9999
FFF	chr12:6710749-6711032(-)$1	283	3	6	8.9999
ee!	chr18:47017829-47018062(-)$1	233	101	104	8.9999
:::	chr2:167142742-167143014(-)$1	272	111	114	8.9999
ooo	chr9:19376395-19376623(-)$1	228	29	32	8.9999
eee	chr17:78302062-78302369(+)$1	307	177	180	8.9999
mee	chr11:2154313-2154524(-)$1	211	43	46	8.9999
:II	chr11:2154120-2154326(-)$1	206	37	40	8.9999
DDD	chr3:121412757-121413036(-)$1	279	83	86	8.9999
ccc	chr22:50297581-50297870(-)$1	289	37	40	8.9999
fff	chr5:138657522-138657821(+)$1	299	129	132	8.9999
ddd	chr11:2154786-2154992(-)$1	206	2	5	8.9999
GGG	chr9:139734531-139734765(+)$1	234	9	12	8.9999
::e	chr9:100777599-100777854(+)$1	255	6	9	8.9999
ooo	chr6:44218110-44218349(+)$1	239	127	130	8.9999
ccF	chr19:15383749-15384045(-)$1	296	10	13	8.9999
eee	chr11:2154792-2154995(-)$1	203	0	3	8.9999
ddd	chr9:712037-712319(+)$1	282	119	122	8.9999
bbe	chr14:56083133-56083378(+)$1	245	162	165	8.9999
fff	chr6:157527418-157527748(+)$1	330	24	27	8.9999
::e	chr3:42680767-42681016(+)$1	249	88	91	8.9999
eee	chr13:20207953-20208202(+)$1	249	74	77	8.9999
ccc	chr22:24313683-24313904(-)$1	221	21	24	8.9999
!gg	chr12:76453493-76453740(-)$1	247	58	61	8.9999
b[c	chr22:24313481-24313737(-)$1	256	71	74	8.9999
dd2	chr11:2156546-2156749(-)$1	203	36	39	8.9999
ggg	chr17:65850554-65850821(+)$1	267	145	148	8.9999
cc:	chr5:37000477-37000771(+)$1	294	173	176	8.9999
ssf	chr11:2154246-2154457(-)$1	211	50	53	8.9999
CCC	chr5:145523968-145524216(-)$1	248	57	60	8.9999
:::	chr11:2154650-2154853(-)$1	203	28	31	8.9999
bbn	chr2:242181793-242182043(-)$1	250	0	3	8.9999
hhh	chrX:53616530-53616800(-)$1	270	8	11	8.9999
LLL	chr16:89367065-89367335(-)$1	270	8	11	8.9999
dd5	chr11:2156540-2156743(-)$1	203	30	33	8.9999
GGG	chr6:44219898-44220102(+)$1	204	4	7	8.9999
:DD	chr22:24313656-24313883(-)$1	227	0	3	8.9999
:::	chr6:56438417-56438761(-)$1	344	3	6	8.9999
ddd	chr8:17822108-17822357(+)$1	249	34	37	8.9999
fff	chr11:2154140-2154356(-)$1	216	67	70	8.9999
:::	chr16:72992191-72992437(-)$1	246	1	4	8.9999
eee	chr6:7579485-7579733(+)$1	248	108	111	8.9999
ccc	chr19:4053825-4054069(-)$1	244	64	67	8.9999
mee	chr11:2154300-2154504(-)$1	204	23	26	8.9999
ggg	chr20:35236183-35236448(+)$1	265	99	102	8.9999
EEE	chr14:102550933-102551186(-)$1	253	199	202	8.9999
fff	chr11:35685022-35685303(+)$1	281	199	202	8.9999
(((	chr17:60108824-60109107(-)$1	283	19	22	8.9999
G{H	chr17:46929766-46930067(+)$1	301	46	49	8.9999
BB{	chr12:123997758-123998017(-)$1	259	43	46	8.9999
EE:	chr11:2154267-2154471(-)$1	204	4	7	8.9999
e]a	chr6:159047631-159047885(+)$1	254	152	155	8.9999
:::	chr6:144783803-144784047(+)$1	244	0	3	8.9999
:DD	chr2:71653642-71653884(+)$1	242	13	16	8.9999
)))	chr10:112349550-112349803(+)$1	253	52	55	8.9999
mff	chr2:71360537-71360807(+)$1	270	35	38	8.9999
:::	chr11:2156496-2156699(-)$1	203	1	4	8.9999
ppp	chr1:46073906-46074176(+)$1	270	30	33	8.9999
:ee	chr11:2154280-2154482(-)$1	202	1	4	8.9999
JJJ	chr14:54416725-54417045(-)$1	320	69	72	8.9999
gbb	chr2:54871356-54871600(+)$1	244	25	28	8.9999
:II	chr11:2154126-2154330(-)$1	204	41	44	8.9999
HHH	chr20:62324532-62324855(+)$1	323	49	52	8.9999
B{I	chr19:10488971-10489228(-)$1	257	33	36	8.9999
:::	chr2:135170305-135170597(+)$1	292	0	3	8.9999
bbm	chr15:34651843-34652134(-)$1	291	90	93	8.9999

#DB
...	chr17:57741103-57741350(+)$1	1	0	3	8.9999
)))	chr4:69202672-69203012(-)$1	1	220	223	8.9999
...	chr22:24313601-24313851(-)$1	1	32	35	8.9999
(((	chr1:32797662-32797947(+)$1	1	20	23	8.9999
)))	chr10:79800278-79800495(+)$1	1	210	213	8.9999
.((	chr12:42707406-42707669(-)$1	1	139	142	8.9999
.))	chr11:2154304-2154508(-)$1	1	27	30	8.9999
)))	chr2:232326575-232326829(-)$1	1	110	113	8.9999
.((	chr14:56083178-56083431(+)$1	1	117	120	8.9999
...	chr11:2154324-2154531(-)$1	1	0	3	8.9999
).)	chr12:76449749-76449960(-)$1	1	91	94	8.9999
(((	chr2:32641087-32641327(+)$1	1	53	56	8.9999
(.(	chr6:44218183-44218424(+)$1	1	54	57	8.9999
)))	chr6:26055947-26056206(-)$1	1	162	165	8.9999
)))	chr11:2154724-2154949(-)$1	1	124	127	8.9999
)))	chr17:4575261-4575492(-)$1	1	92	95	8.9999
(((	chr2:99992779-99993162(+)$1	1	68	71	8.9999
(..	chr11:2156553-2156763(-)$1	1	50	53	8.9999
)).	chr11:2156567-2156787(-)$1	1	74	77	8.9999
((.	chr11:2154185-2154391(-)$1	1	6	9	8.9999
.))	chr11:2154293-2154497(-)$1	1	16	19	8.9999
.))	chr11:2154308-2154513(-)$1	1	32	35	8.9999
(((	chr1:67891682-67891955(-)$1	1	10	13	8.9999
)))	chr14:31619171-31619434(-)$1	1	122	125	8.9999
)))	chr12:54676516-54676759(+)$1	1	174	177	8.9999
.((	chr6:7581496-7581744(+)$1	1	62	65	8.9999
...	chr11:2154271-2154478(-)$1	1	11	14	8.9999
(((	chr7:91622185-91622470(+)$1	1	158	161	8.9999
...	chr12:76448733-76448970(-)$1	1	54	57	8.9999
(((	chr21:47612379-47612592(-)$1	1	29	32	8.9999
...	chr17:45734181-45734445(+)$1	1	77	80	8.9999
(((	chr12:6710749-6711032(-)$1	1	3	6	8.9999
((.	chr18:47017829-47018062(-)$1	1	101	104	8.9999
...	chr2:167142742-167143014(-)$1	1	111	114	8.9999
...	chr9:19376395-19376623(-)$1	1	29	32	8.9999
)))	chr17:78302062-78302369(+)$1	1	177	180	8.9999
.))	chr11:2154313-2154524(-)$1	1	43	46	8.9999
.((	chr11:2154120-2154326(-)$1	1	37	40	8.9999
(((	chr3:121412757-121413036(-)$1	1	83	86	8.9999
(((	chr22:50297581-50297870(-)$1	1	37	40	8.9999
(((	chr5:138657522-138657821(+)$1	1	129	132	8.9999
(((	chr11:2154786-2154992(-)$1	1	2	5	8.9999
(((	chr9:139734531-139734765(+)$1	1	9	12	8.9999
..(	chr9:100777599-100777854(+)$1	1	6	9	8.9999
...	chr6:44218110-44218349(+)$1	1	127	130	8.9999
))(	chr19:15383749-15384045(-)$1	1	10	13	8.9999
(((	chr11:2154792-2154995(-)$1	1	0	3	8.9999
(((	chr9:712037-712319(+)$1	1	119	122	8.9999
(((	chr14:56083133-56083378(+)$1	1	162	165	8.9999
)))	chr6:157527418-157527748(+)$1	1	24	27	8.9999
..(	chr3:42680767-42681016(+)$1	1	88	91	8.9999
)))	chr13:20207953-20208202(+)$1	1	74	77	8.9999
(((	chr22:24313683-24313904(-)$1	1	21	24	8.9999
.((	chr12:76453493-76453740(-)$1	1	58	61	8.9999
(.(	chr22:24313481-24313737(-)$1	1	71	74	8.9999
)).	chr11:2156546-2156749(-)$1	1	36	39	8.9999
(((	chr17:65850554-65850821(+)$1	1	145	148	8.9999
)).	chr5:37000477-37000771(+)$1	1	173	176	8.9999
..)	chr11:2154246-2154457(-)$1	1	50	53	8.9999
(((	chr5:145523968-145524216(-)$1	1	57	60	8.9999
...	chr11:2154650-2154853(-)$1	1	28	31	8.9999
((.	chr2:242181793-242182043(-)$1	1	0	3	8.9999
(((	chrX:53616530-53616800(-)$1	1	8	11	8.9999
...	chr16:89367065-89367335(-)$1	1	8	11	8.9999
)).	chr11:2156540-2156743(-)$1	1	30	33	8.9999
(((	chr6:44219898-44220102(+)$1	1	4	7	8.9999
.((	chr22:24313656-24313883(-)$1	1	0	3	8.9999
...	chr6:56438417-56438761(-)$1	1	3	6	8.9999
(((	chr8:17822108-17822357(+)$1	1	34	37	8.9999
)))	chr11:2154140-2154356(-)$1	1	67	70	8.9999
...	chr16:72992191-72992437(-)$1	1	1	4	8.9999
(((	chr6:7579485-7579733(+)$1	1	108	111	8.9999
(((	chr19:4053825-4054069(-)$1	1	64	67	8.9999
.))	chr11:2154300-2154504(-)$1	1	23	26	8.9999
(((	chr20:35236183-35236448(+)$1	1	99	102	8.9999
)))	chr14:102550933-102551186(-)$1	1	199	202	8.9999
(((	chr11:35685022-35685303(+)$1	1	199	202	8.9999
...	chr17:60108824-60109107(-)$1	1	19	22	8.9999
(.(	chr17:46929766-46930067(+)$1	1	46	49	8.9999
((.	chr12:123997758-123998017(-)$1	1	43	46	8.9999
((.	chr11:2154267-2154471(-)$1	1	4	7	8.9999
).)	chr6:159047631-159047885(+)$1	1	152	155	8.9999
...	chr6:144783803-144784047(+)$1	1	0	3	8.9999
.((	chr2:71653642-71653884(+)$1	1	13	16	8.9999
...	chr10:112349550-112349803(+)$1	1	52	55	8.9999
.))	chr2:71360537-71360807(+)$1	1	35	38	8.9999
...	chr11:2156496-2156699(-)$1	1	1	4	8.9999
...	chr1:46073906-46074176(+)$1	1	30	33	8.9999
.((	chr11:2154280-2154482(-)$1	1	1	4	8.9999
(((	chr14:54416725-54417045(-)$1	1	69	72	8.9999
(((	chr2:54871356-54871600(+)$1	1	25	28	8.9999
.((	chr11:2154126-2154330(-)$1	1	41	44	8.9999
(((	chr20:62324532-62324855(+)$1	1	49	52	8.9999
(.(	chr19:10488971-10489228(-)$1	1	33	36	8.9999
...	chr2:135170305-135170597(+)$1	1	0	3	8.9999
((.	chr15:34651843-34652134(-)$1	1	90	93	8.9999

#PSSM
C : 0.99	
C : 0.99	
U : 0.99	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_transcript_m2_run2.nuc.txt

#NT
uucucucuuucuuuccuugugucuc	chr14:23768772-23769037(-)$1	265	123	148	32.2340
gucucucucucucuucuucuuuuuu	chr10:45450257-45450556(-)$1	299	142	167	32.9787
uuuuuuuucucuuuccccuuuuuuc	chr3:60235683-60236002(-)$1	319	130	155	33.0851
cugucucugucucuccuuuuuuuuu	chr19:18458249-18458534(+)$1	285	180	205	30.6382
uucucucucucuUUGCUUUUUUUUU	chr3:187454915-187455130(-)$1	215	10	35	41.9148
UUCUCUCUCUCUUUGUUCUUUAUAU	chr2:105689517-105689805(+)$1	288	102	127	27.7659
uUCCCuuucucucucuuucuuucuu	chr7:137601335-137601634(-)$1	299	147	172	26.7021
uuuugccuccuuuuCCUUUCCUUUU	chr20:46156534-46156805(+)$1	271	99	124	27.5531
Uucuuccuuccuuucuuuuucuuuc	chr8:13118011-13118259(-)$1	248	101	126	32.2340
uuuucuuucucuuuuuuuuuuuuuu	chr8:121593275-121593548(-)$1	273	190	215	37.5531
ucuucucccucuuuucuuucuuuuc	chr6:17432888-17433133(+)$1	245	111	136	32.4468
uucucucucucuuucucuuucuuug	chr10:15177703-15177935(-)$1	232	4	29	36.1702
UUUUCAUUCUUCUUUUUUUCUUUUC	chr18:18685703-18685976(-)$1	273	80	105	24.4680
gucuuucuuucuuucucuuucuuuc	chr14:91643197-91643450(+)$1	253	133	158	31.2765
uuuccucuuuccuuucuuucuuucu	chr10:76231612-76231917(+)$1	305	140	165	27.5531
uuccaucucucuuucuuucucuuug	chr10:5908790-5909062(-)$1	272	85	110	30.1063
uucuuucuuucuuuccuuuucuuuu	chr22:25887669-25887928(+)$1	259	54	79	41.5957
UUCUUUCCUCCUUUUCUUUCUUUGA	chr6:37931406-37931644(+)$1	238	86	111	27.7659
UUCUGUCUUUCCUUCCUCUCUAUUG	chr2:71304435-71304745(+)$1	310	13	38	25.6382
uucucucucucucuucuuuucuuuc	chr3:11614519-11614812(-)$1	293	118	143	39.8936
cucuauuucucuuuucuuuucuuuu	chr18:37028171-37028440(-)$1	269	86	111	35.5319
UUCCUUUUCCAUUUUCUUCUUUUGU	chr10:101457066-101457344(+)$1	278	78	103	24.5744
uuuucuuccucauuuccuucuuuua	chrX:70764969-70765220(+)$1	251	133	158	26.1702
UCCUCUUUCUUUGUUCUUGUUUUCU	chr20:8485114-8485430(+)$1	316	121	146	24.0425
uucuuuccuucccuccuuuccuucc	chr20:50747541-50747844(-)$1	303	129	154	26.2765
uucuuucuuucuuuucuuucuuuuc	chr2:168874873-168875177(-)$1	304	115	140	39.3617
UCCUuucuucuuuuucuucuucuuc	chr8:97938742-97939022(+)$1	280	6	31	24.2553
uucuuuuuccccuuccuuuccuuuu	chr10:72596191-72596471(+)$1	280	65	90	34.3617
UUCUUCUUGUCUUUCCAUUUCAUUC	chr2:64235779-64236027(-)$1	248	82	107	27.6595
uuuucugucucauuccuuugcuuuC	chr11:68835269-68835489(+)$1	220	30	55	31.9148
uucuccuucuccuuccuucuuucuu	chr3:9355966-9356260(-)$1	294	112	137	28.8297
uccucucucucuuccuuccuuuuuc	chrX:152035555-152035829(+)$1	274	103	128	26.4893
uucucuuucucuucuuucuucuuuu	chr19:32892968-32893225(-)$1	257	69	94	31.3829
uccucuuucucuucccuuuccuuGU	chr11:4103840-4104147(+)$1	307	134	159	29.3617
uucuuucacuguuucccuuacuuuu	chr1:120459551-120459802(-)$1	251	3	28	29.0425
uucuuucuuucuuucuuuuucuuuc	chr11:14746794-14747052(+)$1	258	64	89	38.7234
uucucucccucucuucuuucuuuuc	chr15:62291889-62292192(-)$1	303	128	153	35.3191
Uuuucucuccuuuuucucuucuuuu	chr6:16734542-16734770(-)$1	228	79	104	31.0638
uuuucuuccucuuucccuuccuucc	chr2:218549399-218549655(-)$1	256	103	128	28.6170
ucccuucucccuuuucuuuuucuuu	chr18:55104242-55104544(+)$1	302	121	146	29.4680
uuccuuccuucuuuuccuucuuuuc	chr7:130719960-130720218(-)$1	258	143	168	29.3617
UUCUUUAUAUCAUUCCUUUUUCUUU	chr12:9268096-9268328(-)$1	232	29	54	30.4255
uuccuuuucccuuuccuuuucucuc	chr8:41445937-41446194(+)$1	257	58	83	31.8085
uucuuccuucuucuccuuuuucuuc	chr8:38772341-38772617(+)$1	276	93	118	25.0000
UUUUCUUGCUCUCUCCAUUUCUCUU	chr17:70927111-70927391(-)$1	280	16	41	25.8510
uuuucuuuuccuuuccuuuucuuuu	chr2:3340417-3340672(-)$1	255	97	122	36.1702

#otherMatches

#Struct PSSM
E{EEEEE:::::::::ccc[fffff	chr17:70577768-70578051(-)$1	283	93	118	25.6382
^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:23768772-23769037(-)$1	265	123	148	32.2340
^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:45450257-45450556(-)$1	299	142	167	32.9787
EE:::::::::::::::::::::::	chr3:60235683-60236002(-)$1	319	130	155	33.0851
ttccc::::::::::::::::::::	chr19:18458249-18458534(+)$1	285	180	205	30.6382
:DDDDKKIIIIIIIII:::::::::	chr3:187454915-187455130(-)$1	215	10	35	41.9148
:::::::::::::::::::::::::	chr2:105689517-105689805(+)$1	288	102	127	27.7659
:::::::::::::::::::::::::	chr7:137601335-137601634(-)$1	299	147	172	26.7021
::::dddd!!eeeee^^^^^^^^^^	chr20:46156534-46156805(+)$1	271	99	124	27.5531
:::::::::::::::::::::::::	chr8:13118011-13118259(-)$1	248	101	126	32.2340
f^^^^^^^^^^^^^^^^^^^^^^^^	chr8:121593275-121593548(-)$1	273	190	215	37.5531
:::::::::::::::::::::::::	chr6:17432888-17433133(+)$1	245	111	136	32.4468
:::::::::::::::::::::::::	chr10:15177703-15177935(-)$1	232	4	29	36.1702
ZDDDD::::::::::::::::::::	chr18:18685703-18685976(-)$1	273	80	105	24.4680
:::::::::::::::::::::::::	chr14:91643197-91643450(+)$1	253	133	158	31.2765
:::::::::::::::::::::::::	chr10:76231612-76231917(+)$1	305	140	165	27.5531
::::::::::::::::::::::::c	chr10:5908790-5909062(-)$1	272	85	110	30.1063
:::::::::::::::::::::::::	chr22:25887669-25887928(+)$1	259	54	79	41.5957
::::::::::::::::::::::::E	chr6:37931406-37931644(+)$1	238	86	111	27.7659
::::ccc"""ccc[hhhhhhhh[ee	chr2:71304435-71304745(+)$1	310	13	38	25.6382
:::::::::::::::::::::::::	chr3:11614519-11614812(-)$1	293	118	143	39.8936
:::::::::::::::::::::::::	chr18:37028171-37028440(-)$1	269	86	111	35.5319
444eeeee:::::::::::::::::	chr10:101457066-101457344(+)$1	278	78	103	24.5744
ddd"""dddd!!a!!dddd[eeeee	chrX:70764969-70765220(+)$1	251	133	158	26.1702
yyyyyyyyyyyyccc333bb>>>>>	chr20:8485114-8485430(+)$1	316	121	146	24.0425
:::::::::::::::::::::DDDD	chr20:50747541-50747844(-)$1	303	129	154	26.2765
:::::::::::::::::::::::::	chr2:168874873-168875177(-)$1	304	115	140	39.3617
:::::::::::::::::::::::::	chr8:97938742-97939022(+)$1	280	6	31	24.2553
^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:72596191-72596471(+)$1	280	65	90	34.3617
'''''''bbtttttttttttbb888	chr2:64235779-64236027(-)$1	248	82	107	27.6595
####eeeeeeeeeedddd'''''''	chr11:68835269-68835489(+)$1	220	30	55	31.9148
:::::::::::::::::::::::::	chr3:9355966-9356260(-)$1	294	112	137	28.8297
:::::::::::::::::::::::::	chrX:152035555-152035829(+)$1	274	103	128	26.4893
:::::::::::::::::::::::::	chr19:32892968-32893225(-)$1	257	69	94	31.3829
:::::::::::::ccc[ffffffgg	chr11:4103840-4104147(+)$1	307	134	159	29.3617
:::::::::::::::EEEEEPPPPP	chr1:120459551-120459802(-)$1	251	3	28	29.0425
:::::::::::::::::::::::::	chr11:14746794-14747052(+)$1	258	64	89	38.7234
:::::::::::::::::::::::::	chr15:62291889-62292192(-)$1	303	128	153	35.3191
f!!ccc!!ccc$$$$$hhhhhhhh[	chr6:16734542-16734770(-)$1	228	79	104	31.0638
:::::::::::::::::::::::::	chr2:218549399-218549655(-)$1	256	103	128	28.6170
^^^^^^^^^^^^^^^^^^^^^^^^^	chr18:55104242-55104544(+)$1	302	121	146	29.4680
::::::::::::::ccc[ddddppp	chr7:130719960-130720218(-)$1	258	143	168	29.3617
EEEEOOOOOOHHHHHHHH:::::::	chr12:9268096-9268328(-)$1	232	29	54	30.4255
:::::::::::::::::::::::::	chr8:41445937-41446194(+)$1	257	58	83	31.8085
gggg:EEEEE~~~~BB:::::::::	chr8:38772341-38772617(+)$1	276	93	118	25.0000
::::::::::::::cccpppppppc	chr17:70927111-70927391(-)$1	280	16	41	25.8510
:::::::::::::::::::::::::	chr2:3340417-3340672(-)$1	255	97	122	36.1702

#DB
(.(((((.........(((.(((((	chr17:70577768-70578051(-)$1	1	93	118	25.6382
.........................	chr14:23768772-23769037(-)$1	1	123	148	32.2340
.........................	chr10:45450257-45450556(-)$1	1	142	167	32.9787
((.......................	chr3:60235683-60236002(-)$1	1	130	155	33.0851
..)))....................	chr19:18458249-18458534(+)$1	1	180	205	30.6382
.((((..(((((((((.........	chr3:187454915-187455130(-)$1	1	10	35	41.9148
.........................	chr2:105689517-105689805(+)$1	1	102	127	27.7659
.........................	chr7:137601335-137601634(-)$1	1	147	172	26.7021
....((((..(((((..........	chr20:46156534-46156805(+)$1	1	99	124	27.5531
.........................	chr8:13118011-13118259(-)$1	1	101	126	32.2340
(........................	chr8:121593275-121593548(-)$1	1	190	215	37.5531
.........................	chr6:17432888-17433133(+)$1	1	111	136	32.4468
.........................	chr10:15177703-15177935(-)$1	1	4	29	36.1702
.))))....................	chr18:18685703-18685976(-)$1	1	80	105	24.4680
.........................	chr14:91643197-91643450(+)$1	1	133	158	31.2765
.........................	chr10:76231612-76231917(+)$1	1	140	165	27.5531
........................(	chr10:5908790-5909062(-)$1	1	85	110	30.1063
.........................	chr22:25887669-25887928(+)$1	1	54	79	41.5957
........................(	chr6:37931406-37931644(+)$1	1	86	111	27.7659
....(((...(((.((((((((.((	chr2:71304435-71304745(+)$1	1	13	38	25.6382
.........................	chr3:11614519-11614812(-)$1	1	118	143	39.8936
.........................	chr18:37028171-37028440(-)$1	1	86	111	35.5319
...))))).................	chr10:101457066-101457344(+)$1	1	78	103	24.5744
(((...((((..(..((((.(((((	chrX:70764969-70765220(+)$1	1	133	158	26.1702
............)))...)).....	chr20:8485114-8485430(+)$1	1	121	146	24.0425
.....................((((	chr20:50747541-50747844(-)$1	1	129	154	26.2765
.........................	chr2:168874873-168875177(-)$1	1	115	140	39.3617
.........................	chr8:97938742-97939022(+)$1	1	6	31	24.2553
.........................	chr10:72596191-72596471(+)$1	1	65	90	34.3617
.......((...........))...	chr2:64235779-64236027(-)$1	1	82	107	27.6595
....((((((((((((((.......	chr11:68835269-68835489(+)$1	1	30	55	31.9148
.........................	chr3:9355966-9356260(-)$1	1	112	137	28.8297
.........................	chrX:152035555-152035829(+)$1	1	103	128	26.4893
.........................	chr19:32892968-32893225(-)$1	1	69	94	31.3829
.............(((.((((((((	chr11:4103840-4104147(+)$1	1	134	159	29.3617
...............(((((.....	chr1:120459551-120459802(-)$1	1	3	28	29.0425
.........................	chr11:14746794-14747052(+)$1	1	64	89	38.7234
.........................	chr15:62291889-62292192(-)$1	1	128	153	35.3191
(..(((..(((.....((((((((.	chr6:16734542-16734770(-)$1	1	79	104	31.0638
.........................	chr2:218549399-218549655(-)$1	1	103	128	28.6170
.........................	chr18:55104242-55104544(+)$1	1	121	146	29.4680
..............(((.((((...	chr7:130719960-130720218(-)$1	1	143	168	29.3617
((((......((((((((.......	chr12:9268096-9268328(-)$1	1	29	54	30.4255
.........................	chr8:41445937-41446194(+)$1	1	58	83	31.8085
)))).)))))....)).........	chr8:38772341-38772617(+)$1	1	93	118	25.0000
..............(((.......)	chr17:70927111-70927391(-)$1	1	16	41	25.8510
.........................	chr2:3340417-3340672(-)$1	1	97	122	36.1702

#PSSM
u : 0.63	U : 0.25	g : 0.04	c : 0.04	C : 0.02	
u : 0.65	U : 0.21	c : 0.08	C : 0.04	
c : 0.51	C : 0.21	u : 0.21	U : 0.04	g : 0.02	
u : 0.63	U : 0.21	c : 0.10	C : 0.04	
c : 0.40	u : 0.29	C : 0.12	U : 0.08	a : 0.04	g : 0.02	G : 0.02	
u : 0.70	U : 0.17	c : 0.08	A : 0.02	C : 0.02	
c : 0.51	u : 0.25	U : 0.10	C : 0.08	g : 0.02	A : 0.02	
u : 0.63	U : 0.17	c : 0.12	C : 0.02	a : 0.02	G : 0.02	
c : 0.51	u : 0.25	C : 0.12	U : 0.04	g : 0.02	G : 0.02	A : 0.02	
u : 0.59	c : 0.19	U : 0.17	C : 0.04	
c : 0.68	C : 0.14	u : 0.08	U : 0.04	A : 0.02	g : 0.02	
u : 0.65	U : 0.14	c : 0.08	C : 0.04	a : 0.04	A : 0.02	
u : 0.61	U : 0.19	c : 0.14	G : 0.02	C : 0.02	
u : 0.70	U : 0.23	c : 0.06	
c : 0.44	u : 0.29	U : 0.10	C : 0.10	G : 0.04	
c : 0.55	C : 0.21	u : 0.19	U : 0.04	
u : 0.59	U : 0.19	c : 0.14	A : 0.06	
u : 0.65	U : 0.21	c : 0.08	C : 0.04	
u : 0.59	U : 0.21	c : 0.12	g : 0.02	C : 0.02	G : 0.02	
u : 0.48	c : 0.21	U : 0.14	C : 0.08	G : 0.02	g : 0.02	a : 0.02	
c : 0.38	u : 0.34	U : 0.19	C : 0.06	g : 0.02	
u : 0.68	U : 0.14	A : 0.06	c : 0.06	C : 0.04	
u : 0.65	U : 0.23	c : 0.08	C : 0.02	
u : 0.65	U : 0.14	c : 0.06	G : 0.06	C : 0.04	A : 0.02	
c : 0.34	u : 0.29	U : 0.17	C : 0.08	g : 0.04	A : 0.02	G : 0.02	a : 0.02	

#score	1446.2765957446813
#seq	47
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_UTR_m1_run2.nuc.txt

#NT
GGGGUGAGCCACUGGGGCUGG	chr17:75423182-75423438(+)$1	256	109	130	29.2500
gggaggggagggagcagcugg	chr12:123464008-123464284(+)$1	276	98	119	28.0000
agggggagaaggaggagcugg	chr6:86352557-86352823(-)$1	266	12	33	38.0000
ggggagcggaggaggagcggG	chr11:18034165-18034427(-)$1	262	76	97	30.5000
gggaggagaaggaggaggugg	chr2:20550323-20550588(-)$1	265	68	89	33.0000
AGAGGGAGGUGAGGGUGCUGG	chr19:56146709-56146975(+)$1	266	112	133	26.1250
AGGGGAAGGAAAAGGAGCAGG	chr2:173472384-173472693(+)$1	309	106	127	28.6250

#otherMatches

#Struct PSSM
]eeeee]ccc===========	chr17:75423121-75423382(+)$1	261	170	191	29.2500
rrrrrrrbbffffff]ccc::	chr17:75423182-75423438(+)$1	256	109	130	29.2500
BBB{ACCC:ccc!!ffffffc	chr12:123464008-123464284(+)$1	276	98	119	28.0000
LBBA{CCCNNNNNGGGGGGGK	chr6:86352557-86352823(-)$1	266	12	33	38.0000
:::::CCCKKAOOOOOOFFFF	chr11:18034165-18034427(-)$1	262	76	97	30.5000
e]dddd4444eeeee::::CC	chr2:20550323-20550588(-)$1	265	68	89	33.0000
!!aooooooa22bb]dddd]d	chr19:56146709-56146975(+)$1	266	112	133	26.1250
GGGGGG{ANNNNNDDDD::::	chr2:173472384-173472693(+)$1	309	106	127	28.6250

#DB
.))))).)))(((((((((((	chr17:75423121-75423382(+)$1	1	170	191	29.2500
.......)))))))).)))..	chr17:75423182-75423438(+)$1	1	109	130	29.2500
(((.((((.(((..(((((((	chr12:123464008-123464284(+)$1	1	98	119	28.0000
.(((.(((.....(((((((.	chr6:86352557-86352823(-)$1	1	12	33	38.0000
.....(((..(......((((	chr11:18034165-18034427(-)$1	1	76	97	30.5000
).))))....)))))....((	chr2:20550323-20550588(-)$1	1	68	89	33.0000
..(......)..)).)))).)	chr19:56146709-56146975(+)$1	1	112	133	26.1250
((((((.(.....((((....	chr2:173472384-173472693(+)$1	1	106	127	28.6250

#PSSM
g : 0.37	G : 0.25	A : 0.25	a : 0.12	
G : 0.50	g : 0.50	
g : 0.50	G : 0.37	A : 0.12	
G : 0.50	a : 0.25	g : 0.25	
g : 0.37	U : 0.25	G : 0.25	a : 0.12	
g : 0.50	G : 0.37	A : 0.12	
A : 0.50	a : 0.25	g : 0.12	c : 0.12	
G : 0.50	g : 0.50	
a : 0.37	C : 0.25	G : 0.25	g : 0.12	
a : 0.37	C : 0.25	g : 0.12	U : 0.12	A : 0.12	
g : 0.50	A : 0.37	G : 0.12	
g : 0.50	C : 0.25	A : 0.25	
a : 0.50	U : 0.25	G : 0.12	A : 0.12	
G : 0.50	g : 0.50	
G : 0.50	g : 0.37	c : 0.12	
a : 0.50	G : 0.25	U : 0.12	A : 0.12	
G : 0.50	g : 0.50	
C : 0.50	c : 0.37	g : 0.12	
U : 0.37	u : 0.37	g : 0.12	A : 0.12	
G : 0.50	g : 0.50	
G : 0.62	g : 0.37	

#score	242.75
#seq	8
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_transcript_m1_run1.nuc.txt

#NT
GGGCUGGG	chr9:130985177-130985436(+)$1	259	219	227	20.1428
GGGCUGGG	chr16:23505779-23506050(-)$1	271	70	78	20.1428
GGGCUGGC	chr4:1803733-1804043(+)$1	310	61	69	15.4285
GGGCGGGG	chr16:67199900-67200191(+)$1	291	83	91	16.4285
GGGCUGGG	chr19:2188246-2188511(+)$1	265	81	89	20.1428
GGGCUGGG	chr22:50898071-50898362(-)$1	291	119	127	20.1428
GGGAUGGG	chr3:48593844-48594145(-)$1	301	71	79	15.8571
GGGCGGGG	chr20:32247808-32248077(-)$1	269	114	122	16.4285
GUGCUGGG	chr11:61099839-61100115(-)$1	276	267	275	15.9285
GUGCUGGG	chr20:60622877-60623141(-)$1	264	88	96	15.9285
GGGCUGCG	chr9:139719898-139720149(+)$1	251	95	103	15.5714
ggccuggg	chr3:52517101-52517371(+)$1	270	6	14	15.9285
GGGCUGGG	chr12:58005571-58005839(+)$1	268	244	252	20.1428
gggcgggg	chr16:28222743-28223010(-)$1	267	21	29	16.4285
GGGCUGAG	chr8:41518007-41518321(-)$1	314	45	53	15.6428
GGGCUGAG	chr16:88729989-88730363(+)$1	374	174	182	15.6428
GGGCUGGA	chr19:10772857-10773152(+)$1	295	124	132	15.4285
gggcugug	chr12:133356651-133356911(-)$1	260	149	157	15.6428
GGCCUGGG	chr17:79913744-79914070(-)$1	326	236	244	15.9285
AGGCUGGG	chr1:227170094-227170401(+)$1	307	97	105	16.4999
gggcgggg	chr10:21823996-21824276(+)$1	280	3	11	16.4285
UGGCUGGG	chr9:139565779-139566028(+)$1	249	89	97	16.2857
aggcuggg	chr8:130409772-130410047(-)$1	275	2	10	16.4999
AGGCUGGG	chr8:21938390-21938669(+)$1	279	30	38	16.4999
GGGGUGGG	chr1:12057713-12057956(+)$1	243	60	68	15.9999
GAGCUGGG	chr18:47811872-47812137(-)$1	265	32	40	15.8571
GGGUUGGG	chr22:20112235-20112498(+)$1	263	201	209	15.8571
GGGCUGGG	chr1:228331340-228331702(+)$1	362	91	99	20.1428
gggcgggg	chr19:1978692-1978953(+)$1	261	66	74	16.4285
GGGCUGGU	chr7:100174280-100174518(-)$1	238	38	46	15.4285
GGGCGGGG	chr19:50880484-50880737(+)$1	253	118	126	16.4285
gggcuggg	chr19:878843-879107(-)$1	264	27	35	20.1428
UGGCUGGG	chr22:20965783-20966093(-)$1	310	144	152	16.2857
GGGCAGGG	chr16:70287283-70287505(-)$1	222	60	68	16.4285
GGGCUGGG	chr1:11721384-11721640(+)$1	256	3	11	20.1428
GGGCUGGG	chr1:202155780-202156040(+)$1	260	57	65	20.1428
gagcuggg	chr11:28096690-28096950(-)$1	260	151	159	15.8571
GGGCUGGG	chr22:20111808-20112034(+)$1	226	85	93	20.1428
AGGCUGGG	chr1:227153503-227153836(+)$1	333	295	303	16.4999
GGGAUGGG	chr11:65192396-65192641(+)$1	245	6	14	15.8571
AGGCUGGG	chrX:153593910-153594171(-)$1	261	91	99	16.4999
GGGCAGGG	chr12:133295487-133295731(+)$1	244	184	192	16.4285
GGGGUGGG	chr21:34941914-34942267(+)$1	353	148	156	15.9999
GGGCAGGG	chr19:56181741-56181995(+)$1	254	212	220	16.4285
gugcuggg	chr12:133295185-133295456(+)$1	271	23	31	15.9285
GGGCUGGG	chr16:85670252-85670507(+)$1	255	48	56	20.1428
GGACUGGG	chr1:249151724-249152040(-)$1	316	227	235	15.7857
GGUCUGGG	chr9:130986904-130987252(+)$1	348	117	125	15.7142
GGGGUGGG	chr16:89660541-89660808(+)$1	267	64	72	15.9999
GGGCUGGG	chr3:38495981-38496240(+)$1	259	24	32	20.1428
GGCCUGGG	chrX:153583852-153584136(-)$1	284	213	221	15.9285
GGGCAGGG	chr7:44799727-44800036(+)$1	309	40	48	16.4285
CGGCUGGG	chr1:1687262-1687578(-)$1	316	79	87	16.0714
UGGCUGGG	chr7:2395239-2395463(+)$1	224	119	127	16.2857
GGGCUGGG	chr22:21349306-21349598(+)$1	292	36	44	20.1428
GGGCAGGG	chr6:35447398-35447698(-)$1	300	137	145	16.4285
UGGCUGGG	chr16:89555648-89555904(-)$1	256	100	108	16.2857
GAGCUGGG	chr22:49919103-49919360(-)$1	257	125	133	15.8571
GGGGUGGG	chr5:133985194-133985459(+)$1	265	66	74	15.9999
GGGCUGGG	chr19:49495305-49495567(-)$1	262	209	217	20.1428
AGGCUGGG	chr16:599770-600079(+)$1	309	61	69	16.4999
GGGCUGGG	chr1:29214654-29214881(+)$1	227	87	95	20.1428
GGACUGGG	chr5:1330397-1330674(-)$1	277	45	53	15.7857
AGGCUGGG	chr11:70270535-70270802(+)$1	267	94	102	16.4999
GGGCUGGG	chr19:18478472-18478721(+)$1	249	77	85	20.1428
gugcuggg	chr16:384104-384320(-)$1	216	9	17	15.9285
GGCCUGGG	chr22:50661205-50661484(-)$1	279	142	150	15.9285
GGGCAGGG	chr16:85674526-85674796(+)$1	270	95	103	16.4285
GGGUUGGG	chr12:57905815-57906082(+)$1	267	130	138	15.8571

#otherMatches

#Struct PSSM
EEEEEEEE	chr2:64068081-64068414(+)$1	333	77	85	15.6428
GGGGGGGC	chr9:130985177-130985436(+)$1	259	219	227	20.1428
44eeeee4	chr16:23505779-23506050(-)$1	271	70	78	20.1428
cccnnnnn	chr4:1803733-1804043(+)$1	310	61	69	15.4285
GFFFFFFL	chr16:67199900-67200191(+)$1	291	83	91	16.4285
eee!!ddd	chr19:2188246-2188511(+)$1	265	81	89	20.1428
bb]cccJJ	chr22:50898071-50898362(-)$1	291	119	127	20.1428
oooooodd	chr3:48593844-48594145(-)$1	301	71	79	15.8571
eeeeEEEE	chr20:32247808-32248077(-)$1	269	114	122	16.4285
CYYCCC::	chr11:61099839-61100115(-)$1	276	267	275	15.9285
EEE}BBGG	chr20:60622877-60623141(-)$1	264	88	96	15.9285
eeeee[bb	chr9:139719898-139720149(+)$1	251	95	103	15.5714
bb!!====	chr3:52517101-52517371(+)$1	270	6	14	15.9285
HHFFFFFF	chr12:58005571-58005839(+)$1	268	244	252	20.1428
mmmmcccG	chr16:28222743-28223010(-)$1	267	21	29	16.4285
#ccclllc	chr8:41518007-41518321(-)$1	314	45	53	15.6428
fffff!!=	chr16:88729989-88730363(+)$1	374	174	182	15.6428
ddd[cccb	chr19:10772857-10773152(+)$1	295	124	132	15.4285
GGDDDD}C	chr12:133356651-133356911(-)$1	260	149	157	15.6428
GGGGGGG:	chr17:79913744-79914070(-)$1	326	236	244	15.9285
$$$eeeee	chr1:227170094-227170401(+)$1	307	97	105	16.4999
HHHHHccc	chr10:21823996-21824276(+)$1	280	3	11	16.4285
]a]ccc33	chr9:139565779-139566028(+)$1	249	89	97	16.2857
:a[eeeee	chr8:130409772-130410047(-)$1	275	2	10	16.4999
b[======	chr8:21938390-21938669(+)$1	279	30	38	16.4999
FFFFFFKK	chr1:12057713-12057956(+)$1	243	60	68	15.9999
rrccceee	chr18:47811872-47812137(-)$1	265	32	40	15.8571
iiiiii[b	chr22:20112235-20112498(+)$1	263	201	209	15.8571
eeebb22b	chr1:228331340-228331702(+)$1	362	91	99	20.1428
EEE{FFFF	chr19:1978692-1978953(+)$1	261	66	74	16.4285
ggggggg!	chr7:100174280-100174518(-)$1	238	38	46	15.4285
::ccc[ee	chr19:50880484-50880737(+)$1	253	118	126	16.4285
"""a[a[d	chr19:878843-879107(-)$1	264	27	35	20.1428
hhhhhh!!	chr22:20965783-20966093(-)$1	310	144	152	16.2857
IIIIIIII	chr16:70287283-70287505(-)$1	222	60	68	16.4285
HHHHHHH{	chr1:11721384-11721640(+)$1	256	3	11	20.1428
DDDKKA{F	chr1:202155780-202156040(+)$1	260	57	65	20.1428
ggggffff	chr11:28096690-28096950(-)$1	260	151	159	15.8571
iiiiiiii	chr22:20111808-20112034(+)$1	226	85	93	20.1428
22======	chr1:227153503-227153836(+)$1	333	295	303	16.4999
D{CCCKKE	chr11:65192396-65192641(+)$1	245	6	14	15.8571
:JJJJJJJ	chrX:153593910-153594171(-)$1	261	91	99	16.4999
HHHHHHJJ	chr12:133295487-133295731(+)$1	244	184	192	16.4285
IIII:::G	chr21:34941914-34942267(+)$1	353	148	156	15.9999
cchhhhhh	chr19:56181741-56181995(+)$1	254	212	220	16.4285
C{AKKFFF	chr12:133295185-133295456(+)$1	271	23	31	15.9285
HHHH{CCC	chr16:85670252-85670507(+)$1	255	48	56	20.1428
gggggeee	chr1:249151724-249152040(-)$1	316	227	235	15.7857
c]bbeeee	chr9:130986904-130987252(+)$1	348	117	125	15.7142
cc]bb]ff	chr16:89660541-89660808(+)$1	267	64	72	15.9999
iiiiiiii	chr3:38495981-38496240(+)$1	259	24	32	20.1428
DD~~~~JJ	chrX:153583852-153584136(-)$1	284	213	221	15.9285
dddd:ddd	chr7:44799727-44800036(+)$1	309	40	48	16.4285
::eeeeeo	chr1:1687262-1687578(-)$1	316	79	87	16.0714
ssssssbb	chr7:2395239-2395463(+)$1	224	119	127	16.2857
====ccc[	chr22:21349306-21349598(+)$1	292	36	44	20.1428
22dddd22	chr6:35447398-35447698(-)$1	300	137	145	16.4285
f[dddd''	chr16:89555648-89555904(-)$1	256	100	108	16.2857
55dddd44	chr22:49919103-49919360(-)$1	257	125	133	15.8571
ppppa]ff	chr5:133985194-133985459(+)$1	265	66	74	15.9999
ga4444hh	chr19:49495305-49495567(-)$1	262	209	217	20.1428
EEEKKCCC	chr16:599770-600079(+)$1	309	61	69	16.4999
b[gggggg	chr1:29214654-29214881(+)$1	227	87	95	20.1428
b333gggg	chr5:1330397-1330674(-)$1	277	45	53	15.7857
:::EEEEE	chr11:70270535-70270802(+)$1	267	94	102	16.4999
ff:cccqq	chr19:18478472-18478721(+)$1	249	77	85	20.1428
gggggg%%	chr16:384104-384320(-)$1	216	9	17	15.9285
fffff:ee	chr22:50661205-50661484(-)$1	279	142	150	15.9285
ddd22fff	chr16:85674526-85674796(+)$1	270	95	103	16.4285
"ggggggg	chr12:57905815-57906082(+)$1	267	130	138	15.8571

#DB
((((((((	chr2:64068081-64068414(+)$1	1	77	85	15.6428
))))))))	chr9:130985177-130985436(+)$1	1	219	227	20.1428
..))))).	chr16:23505779-23506050(-)$1	1	70	78	20.1428
(((.....	chr4:1803733-1804043(+)$1	1	61	69	15.4285
(((((((.	chr16:67199900-67200191(+)$1	1	83	91	16.4285
(((..(((	chr19:2188246-2188511(+)$1	1	81	89	20.1428
)).)))((	chr22:50898071-50898362(-)$1	1	119	127	20.1428
......))	chr3:48593844-48594145(-)$1	1	71	79	15.8571
))))))))	chr20:32247808-32248077(-)$1	1	114	122	16.4285
)..)))..	chr11:61099839-61100115(-)$1	1	267	275	15.9285
))).))((	chr20:60622877-60623141(-)$1	1	88	96	15.9285
(((((.((	chr9:139719898-139720149(+)$1	1	95	103	15.5714
((..((((	chr3:52517101-52517371(+)$1	1	6	14	15.9285
))))))))	chr12:58005571-58005839(+)$1	1	244	252	20.1428
....)))(	chr16:28222743-28223010(-)$1	1	21	29	16.4285
.(((...)	chr8:41518007-41518321(-)$1	1	45	53	15.6428
(((((..(	chr16:88729989-88730363(+)$1	1	174	182	15.6428
(((.((((	chr19:10772857-10773152(+)$1	1	124	132	15.4285
)))))).)	chr12:133356651-133356911(-)$1	1	149	157	15.6428
))))))).	chr17:79913744-79914070(-)$1	1	236	244	15.9285
...(((((	chr1:227170094-227170401(+)$1	1	97	105	16.4999
((((((((	chr10:21823996-21824276(+)$1	1	3	11	16.4285
.).)))..	chr9:139565779-139566028(+)$1	1	89	97	16.2857
.(.(((((	chr8:130409772-130410047(-)$1	1	2	10	16.4999
(.((((((	chr8:21938390-21938669(+)$1	1	30	38	16.4999
((((((..	chr1:12057713-12057956(+)$1	1	60	68	15.9999
..)))(((	chr18:47811872-47812137(-)$1	1	32	40	15.8571
((((((.(	chr22:20112235-20112498(+)$1	1	201	209	15.8571
)))))..)	chr1:228331340-228331702(+)$1	1	91	99	20.1428
(((.((((	chr19:1978692-1978953(+)$1	1	66	74	16.4285
(((((((.	chr7:100174280-100174518(-)$1	1	38	46	15.4285
..(((.((	chr19:50880484-50880737(+)$1	1	118	126	16.4285
...(.(.(	chr19:878843-879107(-)$1	1	27	35	20.1428
((((((..	chr22:20965783-20966093(-)$1	1	144	152	16.2857
((((((((	chr16:70287283-70287505(-)$1	1	60	68	16.4285
(((((((.	chr1:11721384-11721640(+)$1	1	3	11	20.1428
(((..(.(	chr1:202155780-202156040(+)$1	1	57	65	20.1428
))))))))	chr11:28096690-28096950(-)$1	1	151	159	15.8571
((((((((	chr22:20111808-20112034(+)$1	1	85	93	20.1428
..))))))	chr1:227153503-227153836(+)$1	1	295	303	16.4999
(.(((..(	chr11:65192396-65192641(+)$1	1	6	14	15.8571
.(((((((	chrX:153593910-153594171(-)$1	1	91	99	16.4999
))))))((	chr12:133295487-133295731(+)$1	1	184	192	16.4285
))))...(	chr21:34941914-34942267(+)$1	1	148	156	15.9999
))))))))	chr19:56181741-56181995(+)$1	1	212	220	16.4285
(.(..(((	chr12:133295185-133295456(+)$1	1	23	31	15.9285
((((.(((	chr16:85670252-85670507(+)$1	1	48	56	20.1428
((((((((	chr1:249151724-249152040(-)$1	1	227	235	15.7857
).))))))	chr9:130986904-130987252(+)$1	1	117	125	15.7142
)).)).))	chr16:89660541-89660808(+)$1	1	64	72	15.9999
((((((((	chr3:38495981-38496240(+)$1	1	24	32	20.1428
))....))	chrX:153583852-153584136(-)$1	1	213	221	15.9285
)))).(((	chr7:44799727-44800036(+)$1	1	40	48	16.4285
..(((((.	chr1:1687262-1687578(-)$1	1	79	87	16.0714
......))	chr7:2395239-2395463(+)$1	1	119	127	16.2857
(((((((.	chr22:21349306-21349598(+)$1	1	36	44	20.1428
..))))..	chr6:35447398-35447698(-)$1	1	137	145	16.4285
(.((((..	chr16:89555648-89555904(-)$1	1	100	108	16.2857
..))))..	chr22:49919103-49919360(-)$1	1	125	133	15.8571
....).))	chr5:133985194-133985459(+)$1	1	66	74	15.9999
))....))	chr19:49495305-49495567(-)$1	1	209	217	20.1428
(((..(((	chr16:599770-600079(+)$1	1	61	69	16.4999
(.((((((	chr1:29214654-29214881(+)$1	1	87	95	20.1428
)...))))	chr5:1330397-1330674(-)$1	1	45	53	15.7857
...)))))	chr11:70270535-70270802(+)$1	1	94	102	16.4999
)).(((..	chr19:18478472-18478721(+)$1	1	77	85	20.1428
((((((..	chr16:384104-384320(-)$1	1	9	17	15.9285
))))).((	chr22:50661205-50661484(-)$1	1	142	150	15.9285
)))..)))	chr16:85674526-85674796(+)$1	1	95	103	16.4285
.(((((((	chr12:57905815-57906082(+)$1	1	130	138	15.8571

#PSSM
G : 0.69	g : 0.12	A : 0.08	U : 0.05	a : 0.01	C : 0.01	
G : 0.79	g : 0.10	U : 0.02	A : 0.02	u : 0.02	a : 0.01	
G : 0.77	g : 0.12	C : 0.04	A : 0.02	c : 0.01	U : 0.01	
C : 0.74	c : 0.14	G : 0.05	A : 0.02	U : 0.02	
U : 0.72	u : 0.10	A : 0.08	G : 0.04	g : 0.04	
G : 0.85	g : 0.14	
G : 0.79	g : 0.12	A : 0.02	U : 0.01	C : 0.01	u : 0.01	
G : 0.81	g : 0.14	C : 0.01	A : 0.01	U : 0.01	

#score	1190.2857142857133
#seq	70
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_UTR_m1_run2.nuc.txt

#NT
AGG	chrX:153590928-153591154(-)$1	226	0	3	8.9999
AGG	chr3:184041164-184041424(+)$1	260	29	32	8.9999
AGG	chr8:124357033-124357328(-)$1	295	17	20	8.9999
AGG	chrX:153590714-153590961(-)$1	247	13	16	8.9999
AGG	chrX:153582948-153583158(-)$1	210	6	9	8.9999
AGG	chr1:19438936-19439184(-)$1	248	54	57	8.9999
AGG	chr22:42032439-42032739(+)$1	300	21	24	8.9999
AGG	chrX:153587318-153587574(-)$1	256	50	53	8.9999
agg	chr17:57697321-57697527(+)$1	206	53	56	8.9999
AGG	chr5:140956941-140957175(-)$1	234	58	61	8.9999
AGG	chrX:153586714-153586934(-)$1	220	71	74	8.9999
AGG	chr3:184045563-184045816(+)$1	253	52	55	8.9999
agg	chr17:57697327-57697558(+)$1	231	47	50	8.9999
AGG	chrX:153580152-153580356(-)$1	204	4	7	8.9999
agg	chr3:184048953-184049211(+)$1	258	2	5	8.9999
AGG	chrX:41055478-41055699(+)$1	221	36	39	8.9999
AGG	chrX:153587374-153587592(-)$1	218	1	4	8.9999
AGG	chr5:154173579-154173843(+)$1	264	15	18	8.9999
AGG	chrX:153587753-153587968(-)$1	215	11	14	8.9999
AGG	chrX:153587646-153587868(-)$1	222	15	18	8.9999
AGG	chr3:184041639-184041865(+)$1	226	25	28	8.9999
AGG	chr7:158457196-158457450(-)$1	254	126	129	8.9999
AGG	chrX:153580156-153580403(-)$1	247	51	54	8.9999
AGG	chr2:48032672-48032939(+)$1	267	82	85	8.9999
AGG	chr2:61719072-61719315(-)$1	243	0	3	8.9999
AGG	chr2:61717687-61717986(-)$1	299	31	34	8.9999
AGG	chr14:102551661-102551868(-)$1	207	31	34	8.9999
AGG	chr3:33877442-33877859(+)$1	417	151	154	8.9999
AGG	chr1:19439003-19439271(-)$1	268	141	144	8.9999
AGG	chr18:2775708-2775984(+)$1	276	151	154	8.9999
AGG	chrX:153588069-153588296(-)$1	227	21	24	8.9999
AGG	chr3:184045616-184045869(+)$1	253	2	5	8.9999
AGG	chr11:61083655-61083945(-)$1	290	8	11	8.9999
AGG	chrX:153579194-153579445(-)$1	251	34	37	8.9999
AGG	chrX:153590576-153590799(-)$1	223	12	15	8.9999
AGG	chrX:153588537-153588762(-)$1	225	51	54	8.9999
AGG	chrX:153588477-153588699(-)$1	222	34	37	8.9999
AGG	chrX:153587896-153588114(-)$1	218	9	12	8.9999
AGG	chrX:153582182-153582390(-)$1	208	93	96	8.9999
AGG	chr3:184039073-184039338(+)$1	265	8	11	8.9999
AGG	chr3:47887119-47887441(+)$1	322	88	91	8.9999
AGG	chrX:153590251-153590468(-)$1	217	7	10	8.9999
AGG	chr1:19426007-19426246(-)$1	239	0	3	8.9999
AGG	chrX:153585809-153586063(-)$1	254	13	16	8.9999
AGG	chr3:9512269-9512566(+)$1	297	72	75	8.9999
AGG	chrX:153581693-153581911(-)$1	218	27	30	8.9999
AGG	chr19:41807339-41807671(+)$1	332	43	46	8.9999
AGG	chr2:48030463-48030718(+)$1	255	40	43	8.9999
AGG	chr3:184049644-184049881(+)$1	237	6	9	8.9999
AGG	chrX:153588154-153588366(-)$1	212	0	3	8.9999
AGG	chrX:153581429-153581668(-)$1	239	17	20	8.9999
AGG	chrX:153581979-153582189(-)$1	210	38	41	8.9999
AGG	chrX:153586712-153586914(-)$1	202	51	54	8.9999
AGG	chr17:57738786-57739067(+)$1	281	15	18	8.9999
AGG	chrX:153588103-153588322(-)$1	219	1	4	8.9999
AGG	chrX:153592306-153592532(-)$1	226	7	10	8.9999
AGG	chr7:2402604-2402862(+)$1	258	6	9	8.9999
AGG	chr1:19430528-19430778(-)$1	250	25	28	8.9999
AGG	chr2:61709417-61709698(-)$1	281	22	25	8.9999
AGG	chr11:14515697-14515954(-)$1	257	86	89	8.9999
AGG	chr5:137895506-137895787(-)$1	281	5	8	8.9999
AGG	chr11:14515654-14515897(-)$1	243	29	32	8.9999
AGG	chrX:153588171-153588372(-)$1	201	6	9	8.9999
AGG	chrX:153582746-153582951(-)$1	205	42	45	8.9999
AGG	chr9:114137326-114137578(-)$1	252	20	23	8.9999
AGG	chr11:61077694-61077966(-)$1	272	47	50	8.9999
AGG	chrX:153581269-153581483(-)$1	214	52	55	8.9999
AGG	chr11:122930509-122930758(-)$1	249	20	23	8.9999
AGG	chr9:95030361-95030631(-)$1	270	47	50	8.9999
AGG	chr5:43290972-43291286(-)$1	314	65	68	8.9999
AGG	chrX:153588009-153588225(-)$1	216	13	16	8.9999
AGG	chrX:153582688-153582928(-)$1	240	19	22	8.9999
AGG	chr3:184040276-184040527(+)$1	251	1	4	8.9999
AGG	chr6:37142744-37142987(+)$1	243	9	12	8.9999
AGG	chr6:161512961-161513276(+)$1	315	130	133	8.9999
AGG	chr3:184049630-184049844(+)$1	214	20	23	8.9999
aGG	chr9:95033167-95033431(-)$1	264	71	74	8.9999
AGG	chr3:184044590-184044848(+)$1	258	19	22	8.9999
AGG	chr9:95042944-95043221(-)$1	277	44	47	8.9999
AGG	chrX:153580925-153581135(-)$1	210	36	39	8.9999
AGG	chr9:95021123-95021378(-)$1	255	1	4	8.9999
AGG	chr11:61077675-61077894(-)$1	219	2	5	8.9999
AGG	chr19:34949647-34949902(+)$1	255	126	129	8.9999
AGG	chrX:153582233-153582499(-)$1	266	51	54	8.9999
AGG	chrX:153581104-153581334(-)$1	230	17	20	8.9999
AGG	chr5:137902589-137902887(-)$1	298	53	56	8.9999
AGG	chr14:102550153-102550407(-)$1	254	3	6	8.9999
AGG	chrX:153588499-153588717(-)$1	218	6	9	8.9999
AGG	chr21:38573946-38574254(+)$1	308	174	177	8.9999
AGG	chr5:32363962-32364253(-)$1	291	100	103	8.9999
AGG	chr8:95507864-95508191(-)$1	327	14	17	8.9999
AGG	chr9:95027191-95027439(-)$1	248	69	72	8.9999
AGG	chr16:58608852-58609116(-)$1	264	81	84	8.9999
AGG	chrX:153588258-153588467(-)$1	209	47	50	8.9999
AGG	chrX:153581378-153581610(-)$1	232	36	39	8.9999
AGG	chrX:41055744-41055983(+)$1	239	58	61	8.9999
AGG	chrX:153590511-153590744(-)$1	233	18	21	8.9999
AGG	chr8:48874511-48874773(+)$1	262	58	61	8.9999

#otherMatches

#Struct PSSM
FFL	chrX:39911377-39911642(-)$1	265	93	96	8.9999
:::	chrX:153590928-153591154(-)$1	226	0	3	8.9999
KKD	chr3:184041164-184041424(+)$1	260	29	32	8.9999
cc[	chr8:124357033-124357328(-)$1	295	17	20	8.9999
FFF	chrX:153590714-153590961(-)$1	247	13	16	8.9999
{FF	chrX:153582948-153583158(-)$1	210	6	9	8.9999
fff	chr1:19438936-19439184(-)$1	248	54	57	8.9999
LFF	chr22:42032439-42032739(+)$1	300	21	24	8.9999
see	chrX:153587318-153587574(-)$1	256	50	53	8.9999
[bb	chr17:57697321-57697527(+)$1	206	53	56	8.9999
eee	chr5:140956941-140957175(-)$1	234	58	61	8.9999
NEE	chrX:153586714-153586934(-)$1	220	71	74	8.9999
ggg	chr3:184045563-184045816(+)$1	253	52	55	8.9999
[bb	chr17:57697327-57697558(+)$1	231	47	50	8.9999
fff	chrX:153580152-153580356(-)$1	204	4	7	8.9999
EEE	chr3:184048953-184049211(+)$1	258	2	5	8.9999
mmm	chrX:41055478-41055699(+)$1	221	36	39	8.9999
eee	chrX:153587374-153587592(-)$1	218	1	4	8.9999
:HH	chr5:154173579-154173843(+)$1	264	15	18	8.9999
"ff	chrX:153587753-153587968(-)$1	215	11	14	8.9999
DDH	chrX:153587646-153587868(-)$1	222	15	18	8.9999
HHH	chr3:184041639-184041865(+)$1	226	25	28	8.9999
ooo	chr7:158457196-158457450(-)$1	254	126	129	8.9999
[ee	chrX:153580156-153580403(-)$1	247	51	54	8.9999
e[a	chr2:48032672-48032939(+)$1	267	82	85	8.9999
:DD	chr2:61719072-61719315(-)$1	243	0	3	8.9999
KKC	chr2:61717687-61717986(-)$1	299	31	34	8.9999
bb]	chr14:102551661-102551868(-)$1	207	31	34	8.9999
{GG	chr3:33877442-33877859(+)$1	417	151	154	8.9999
fff	chr1:19439003-19439271(-)$1	268	141	144	8.9999
eee	chr18:2775708-2775984(+)$1	276	151	154	8.9999
eee	chrX:153588069-153588296(-)$1	227	21	24	8.9999
FFF	chr3:184045616-184045869(+)$1	253	2	5	8.9999
GA{	chr11:61083655-61083945(-)$1	290	8	11	8.9999
GGG	chrX:153579194-153579445(-)$1	251	34	37	8.9999
eee	chrX:153590576-153590799(-)$1	223	12	15	8.9999
!ee	chrX:153588537-153588762(-)$1	225	51	54	8.9999
JJJ	chrX:153588477-153588699(-)$1	222	34	37	8.9999
:FF	chrX:153587896-153588114(-)$1	218	9	12	8.9999
ooa	chrX:153582182-153582390(-)$1	208	93	96	8.9999
{EE	chr3:184039073-184039338(+)$1	265	8	11	8.9999
LCC	chr3:47887119-47887441(+)$1	322	88	91	8.9999
:CC	chrX:153590251-153590468(-)$1	217	7	10	8.9999
:::	chr1:19426007-19426246(-)$1	239	0	3	8.9999
GGG	chrX:153585809-153586063(-)$1	254	13	16	8.9999
fff	chr3:9512269-9512566(+)$1	297	72	75	8.9999
::f	chrX:153581693-153581911(-)$1	218	27	30	8.9999
{DD	chr19:41807339-41807671(+)$1	332	43	46	8.9999
eee	chr2:48030463-48030718(+)$1	255	40	43	8.9999
:GG	chr3:184049644-184049881(+)$1	237	6	9	8.9999
::c	chrX:153588154-153588366(-)$1	212	0	3	8.9999
""d	chrX:153581429-153581668(-)$1	239	17	20	8.9999
fff	chrX:153581979-153582189(-)$1	210	38	41	8.9999
FFF	chrX:153586712-153586914(-)$1	202	51	54	8.9999
:dd	chr17:57738786-57739067(+)$1	281	15	18	8.9999
B{B	chrX:153588103-153588322(-)$1	219	1	4	8.9999
III	chrX:153592306-153592532(-)$1	226	7	10	8.9999
oob	chr7:2402604-2402862(+)$1	258	6	9	8.9999
EE:	chr1:19430528-19430778(-)$1	250	25	28	8.9999
eee	chr2:61709417-61709698(-)$1	281	22	25	8.9999
GGG	chr11:14515697-14515954(-)$1	257	86	89	8.9999
:dd	chr5:137895506-137895787(-)$1	281	5	8	8.9999
GGG	chr11:14515654-14515897(-)$1	243	29	32	8.9999
FFF	chrX:153588171-153588372(-)$1	201	6	9	8.9999
[ag	chrX:153582746-153582951(-)$1	205	42	45	8.9999
hhh	chr9:114137326-114137578(-)$1	252	20	23	8.9999
fff	chr11:61077694-61077966(-)$1	272	47	50	8.9999
g:f	chrX:153581269-153581483(-)$1	214	52	55	8.9999
DDD	chr11:122930509-122930758(-)$1	249	20	23	8.9999
eee	chr9:95030361-95030631(-)$1	270	47	50	8.9999
fff	chr5:43290972-43291286(-)$1	314	65	68	8.9999
DDi	chrX:153588009-153588225(-)$1	216	13	16	8.9999
ee]	chrX:153582688-153582928(-)$1	240	19	22	8.9999
:FF	chr3:184040276-184040527(+)$1	251	1	4	8.9999
GGG	chr6:37142744-37142987(+)$1	243	9	12	8.9999
CLL	chr6:161512961-161513276(+)$1	315	130	133	8.9999
c[b	chr3:184049630-184049844(+)$1	214	20	23	8.9999
e:f	chr9:95033167-95033431(-)$1	264	71	74	8.9999
[ee	chr3:184044590-184044848(+)$1	258	19	22	8.9999
Ebb	chr9:95042944-95043221(-)$1	277	44	47	8.9999
c[a	chrX:153580925-153581135(-)$1	210	36	39	8.9999
:dd	chr9:95021123-95021378(-)$1	255	1	4	8.9999
FFF	chr11:61077675-61077894(-)$1	219	2	5	8.9999
ooo	chr19:34949647-34949902(+)$1	255	126	129	8.9999
DDD	chrX:153582233-153582499(-)$1	266	51	54	8.9999
[dd	chrX:153581104-153581334(-)$1	230	17	20	8.9999
CCC	chr5:137902589-137902887(-)$1	298	53	56	8.9999
:DD	chr14:102550153-102550407(-)$1	254	3	6	8.9999
:DD	chrX:153588499-153588717(-)$1	218	6	9	8.9999
III	chr21:38573946-38574254(+)$1	308	174	177	8.9999
eee	chr5:32363962-32364253(-)$1	291	100	103	8.9999
fff	chr8:95507864-95508191(-)$1	327	14	17	8.9999
ddd	chr9:95027191-95027439(-)$1	248	69	72	8.9999
:cc	chr16:58608852-58609116(-)$1	264	81	84	8.9999
]bb	chrX:153588258-153588467(-)$1	209	47	50	8.9999
[cc	chrX:153581378-153581610(-)$1	232	36	39	8.9999
BB{	chrX:41055744-41055983(+)$1	239	58	61	8.9999
::D	chrX:153590511-153590744(-)$1	233	18	21	8.9999
:cc	chr8:48874511-48874773(+)$1	262	58	61	8.9999

#DB
((.	chrX:39911377-39911642(-)$1	1	93	96	8.9999
...	chrX:153590928-153591154(-)$1	1	0	3	8.9999
..(	chr3:184041164-184041424(+)$1	1	29	32	8.9999
((.	chr8:124357033-124357328(-)$1	1	17	20	8.9999
(((	chrX:153590714-153590961(-)$1	1	13	16	8.9999
.((	chrX:153582948-153583158(-)$1	1	6	9	8.9999
(((	chr1:19438936-19439184(-)$1	1	54	57	8.9999
.((	chr22:42032439-42032739(+)$1	1	21	24	8.9999
.))	chrX:153587318-153587574(-)$1	1	50	53	8.9999
.((	chr17:57697321-57697527(+)$1	1	53	56	8.9999
(((	chr5:140956941-140957175(-)$1	1	58	61	8.9999
.((	chrX:153586714-153586934(-)$1	1	71	74	8.9999
)))	chr3:184045563-184045816(+)$1	1	52	55	8.9999
.((	chr17:57697327-57697558(+)$1	1	47	50	8.9999
(((	chrX:153580152-153580356(-)$1	1	4	7	8.9999
(((	chr3:184048953-184049211(+)$1	1	2	5	8.9999
...	chrX:41055478-41055699(+)$1	1	36	39	8.9999
(((	chrX:153587374-153587592(-)$1	1	1	4	8.9999
.((	chr5:154173579-154173843(+)$1	1	15	18	8.9999
.((	chrX:153587753-153587968(-)$1	1	11	14	8.9999
(((	chrX:153587646-153587868(-)$1	1	15	18	8.9999
(((	chr3:184041639-184041865(+)$1	1	25	28	8.9999
...	chr7:158457196-158457450(-)$1	1	126	129	8.9999
.((	chrX:153580156-153580403(-)$1	1	51	54	8.9999
(.(	chr2:48032672-48032939(+)$1	1	82	85	8.9999
.((	chr2:61719072-61719315(-)$1	1	0	3	8.9999
..(	chr2:61717687-61717986(-)$1	1	31	34	8.9999
)).	chr14:102551661-102551868(-)$1	1	31	34	8.9999
.((	chr3:33877442-33877859(+)$1	1	151	154	8.9999
(((	chr1:19439003-19439271(-)$1	1	141	144	8.9999
(((	chr18:2775708-2775984(+)$1	1	151	154	8.9999
)))	chrX:153588069-153588296(-)$1	1	21	24	8.9999
(((	chr3:184045616-184045869(+)$1	1	2	5	8.9999
((.	chr11:61083655-61083945(-)$1	1	8	11	8.9999
(((	chrX:153579194-153579445(-)$1	1	34	37	8.9999
(((	chrX:153590576-153590799(-)$1	1	12	15	8.9999
.((	chrX:153588537-153588762(-)$1	1	51	54	8.9999
(((	chrX:153588477-153588699(-)$1	1	34	37	8.9999
.((	chrX:153587896-153588114(-)$1	1	9	12	8.9999
..)	chrX:153582182-153582390(-)$1	1	93	96	8.9999
.((	chr3:184039073-184039338(+)$1	1	8	11	8.9999
.((	chr3:47887119-47887441(+)$1	1	88	91	8.9999
.((	chrX:153590251-153590468(-)$1	1	7	10	8.9999
...	chr1:19426007-19426246(-)$1	1	0	3	8.9999
(((	chrX:153585809-153586063(-)$1	1	13	16	8.9999
(((	chr3:9512269-9512566(+)$1	1	72	75	8.9999
..(	chrX:153581693-153581911(-)$1	1	27	30	8.9999
.((	chr19:41807339-41807671(+)$1	1	43	46	8.9999
(((	chr2:48030463-48030718(+)$1	1	40	43	8.9999
.((	chr3:184049644-184049881(+)$1	1	6	9	8.9999
..(	chrX:153588154-153588366(-)$1	1	0	3	8.9999
..(	chrX:153581429-153581668(-)$1	1	17	20	8.9999
(((	chrX:153581979-153582189(-)$1	1	38	41	8.9999
(((	chrX:153586712-153586914(-)$1	1	51	54	8.9999
.((	chr17:57738786-57739067(+)$1	1	15	18	8.9999
(.(	chrX:153588103-153588322(-)$1	1	1	4	8.9999
(((	chrX:153592306-153592532(-)$1	1	7	10	8.9999
..)	chr7:2402604-2402862(+)$1	1	6	9	8.9999
((.	chr1:19430528-19430778(-)$1	1	25	28	8.9999
(((	chr2:61709417-61709698(-)$1	1	22	25	8.9999
(((	chr11:14515697-14515954(-)$1	1	86	89	8.9999
.((	chr5:137895506-137895787(-)$1	1	5	8	8.9999
(((	chr11:14515654-14515897(-)$1	1	29	32	8.9999
(((	chrX:153588171-153588372(-)$1	1	6	9	8.9999
.((	chrX:153582746-153582951(-)$1	1	42	45	8.9999
(((	chr9:114137326-114137578(-)$1	1	20	23	8.9999
(((	chr11:61077694-61077966(-)$1	1	47	50	8.9999
).(	chrX:153581269-153581483(-)$1	1	52	55	8.9999
(((	chr11:122930509-122930758(-)$1	1	20	23	8.9999
)))	chr9:95030361-95030631(-)$1	1	47	50	8.9999
(((	chr5:43290972-43291286(-)$1	1	65	68	8.9999
(((	chrX:153588009-153588225(-)$1	1	13	16	8.9999
)).	chrX:153582688-153582928(-)$1	1	19	22	8.9999
.((	chr3:184040276-184040527(+)$1	1	1	4	8.9999
(((	chr6:37142744-37142987(+)$1	1	9	12	8.9999
(..	chr6:161512961-161513276(+)$1	1	130	133	8.9999
(.(	chr3:184049630-184049844(+)$1	1	20	23	8.9999
).(	chr9:95033167-95033431(-)$1	1	71	74	8.9999
.((	chr3:184044590-184044848(+)$1	1	19	22	8.9999
(((	chr9:95042944-95043221(-)$1	1	44	47	8.9999
(.(	chrX:153580925-153581135(-)$1	1	36	39	8.9999
.((	chr9:95021123-95021378(-)$1	1	1	4	8.9999
(((	chr11:61077675-61077894(-)$1	1	2	5	8.9999
...	chr19:34949647-34949902(+)$1	1	126	129	8.9999
(((	chrX:153582233-153582499(-)$1	1	51	54	8.9999
.((	chrX:153581104-153581334(-)$1	1	17	20	8.9999
(((	chr5:137902589-137902887(-)$1	1	53	56	8.9999
.((	chr14:102550153-102550407(-)$1	1	3	6	8.9999
.((	chrX:153588499-153588717(-)$1	1	6	9	8.9999
)))	chr21:38573946-38574254(+)$1	1	174	177	8.9999
(((	chr5:32363962-32364253(-)$1	1	100	103	8.9999
(((	chr8:95507864-95508191(-)$1	1	14	17	8.9999
(((	chr9:95027191-95027439(-)$1	1	69	72	8.9999
.((	chr16:58608852-58609116(-)$1	1	81	84	8.9999
.))	chrX:153588258-153588467(-)$1	1	47	50	8.9999
.((	chrX:153581378-153581610(-)$1	1	36	39	8.9999
((.	chrX:41055744-41055983(+)$1	1	58	61	8.9999
..(	chrX:153590511-153590744(-)$1	1	18	21	8.9999
.((	chr8:48874511-48874773(+)$1	1	58	61	8.9999

#PSSM
A : 0.95	a : 0.04	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_transcript_m3_run1.nuc.txt

#NT
cacacacacacacacacacUCU	chr11:43455588-43455850(+)$1	262	175	197	39.7719
cacacaccuaaauacacacaca	chr7:4287687-4287924(+)$1	237	209	231	40.4736
Cacacacauacauacacacaca	chr2:101458002-101458235(+)$1	233	127	149	49.0701
cacacacacacacacacacaca	chr11:68583959-68584282(-)$1	323	34	56	47.4912
UACACACAUGGCcacacacaca	chr4:5829154-5829409(+)$1	255	139	161	35.1228
cacacacacacacacacacaca	chr19:6717367-6717583(-)$1	216	140	162	47.4912
cucacacauacauucacacaca	chr21:44090840-44091099(+)$1	259	69	91	42.1403
cacgcacauacaugcacacaga	chr16:976141-976381(-)$1	240	62	84	37.2280
CACACACAUACACACCCUGACA	chr17:43242577-43242918(+)$1	341	67	89	35.4736
cacacacaugcacacacaaaca	chr13:113616221-113616480(+)$1	259	76	98	41.7894
UGUACACAGACAUUCACACACA	chr12:57599603-57599848(+)$1	245	212	234	32.1403
cacacacacacauacacacaca	chrX:76830228-76830525(-)$1	297	158	180	47.4035
cacacacauaugcauacacaca	chr16:81504455-81504663(+)$1	208	94	116	36.7017
CUcacacauacacacacacucu	chr15:64941444-64941734(+)$1	290	125	147	37.8421
cacacgcauacacacacacaca	chr7:784981-785253(+)$1	272	74	96	45.2105
gacacacagacacacguacaca	chr14:105176834-105177088(+)$1	254	63	85	34.2456
cauaaacguauacacacaCACA	chr5:86582485-86582745(+)$1	260	132	154	33.0175
cacagacaugcauacauacaca	chr17:76889581-76889862(-)$1	281	175	197	38.4561
cacaagcaugcauacacacaca	chr4:5827479-5827764(+)$1	285	97	119	38.4561
cacacauaugcauacacacacg	chr2:101458197-101458405(+)$1	208	35	57	38.2807
cacacacacacacacacacaca	chr19:6717351-6717559(-)$1	208	116	138	47.4912
uacacacauguacacacacaua	chr20:36001616-36001856(+)$1	240	113	135	36.0000
CAGACACACUCAUACACUCACU	chr17:47438327-47438577(-)$1	250	77	99	31.4385
CAAACACAAACAAACACACACU	chr4:139134428-139134685(-)$1	257	7	29	35.9122
cacacacagucacacagucaca	chr7:157632794-157633022(-)$1	228	89	111	34.2456
uacacgcauacacacacacacg	chr13:113539292-113539514(+)$1	222	91	113	38.3684
cgcacacaugcacacccacaca	chr17:80786424-80786677(+)$1	253	62	84	38.0175
aacauacagagauacacacaca	chr13:50851251-50851460(+)$1	209	3	25	35.1228
Aacauacacacaugcacacaca	chr3:114034175-114034412(-)$1	237	57	79	37.1403
CGUACACACACACACAUACACA	chr2:101511465-101511743(+)$1	278	101	123	35.7368
accacaccuacacacacacaca	chr16:46949823-46950029(+)$1	206	6	28	37.1403
uacacacaugcacacacacaua	chr3:114034260-114034517(-)$1	257	166	188	39.5087
cucacacauacauucacacaca	chr21:44090899-44091177(+)$1	278	10	32	42.1403
cacacacauacaugcacacagu	chr16:11265771-11266020(+)$1	249	130	152	38.1052
cacacgcacacaugcacacaca	chr3:127864943-127865199(-)$1	256	12	34	40.4736
cacgcacacacaugcacacaca	chr11:2153128-2153335(-)$1	207	125	147	39.7719
cacacacauauacacacacuca	chr11:70462988-70463203(-)$1	215	11	33	41.7017
cacagacacacacacacacaca	chr1:12644891-12645097(-)$1	206	176	198	43.4561
cucacacauacacacauacaca	chr20:21122661-21122896(+)$1	235	81	103	41.7017
uacaaauaaacauacacacaca	chr7:77183631-77183917(+)$1	286	121	143	35.0350
uacauacauacauacauacaua	chr15:90641644-90641917(-)$1	273	125	147	34.4210
cacacauauacauacacacacg	chr8:26487445-26487662(+)$1	217	44	66	41.0000
cacacgcaugcacucacacaca	chr9:135252384-135252716(-)$1	332	60	82	39.1578
cacacgcauacucgcacacuca	chr12:124999998-125000242(-)$1	244	1	23	33.8947
uacacacauauauauacacaca	chr13:53040045-53040294(+)$1	249	3	25	38.1052
cacacacacgcucacacacaca	chr9:136657546-136657773(-)$1	227	13	35	40.3859
cucacacacucauacacacuca	chr3:124493997-124494215(-)$1	218	126	148	36.4385
cacacacauguauacacacaca	chr22:47554786-47555015(+)$1	229	174	196	42.8421
cacacagauacacacacacuca	chr16:46949495-46949706(+)$1	211	113	135	40.7368
uacauacauacauacacacaca	chr2:205615192-205615532(+)$1	340	149	171	42.2280
CUcacacacacagucacacaca	chr9:136657202-136657422(-)$1	220	88	110	38.1929
caaacauauacauacacauaca	chr5:111035293-111035575(-)$1	282	80	102	36.0000
cacacacauauacgcacacaca	chr19:54063110-54063329(+)$1	219	140	162	42.6666
AAUACACAUACAUACAUACAUA	chr2:139328562-139328845(+)$1	283	105	127	33.8070
cacacacauacauguacacaua	chr16:81504665-81504873(+)$1	208	146	168	37.6666
cacacacacacacacacacaca	chr7:6058475-6058738(+)$1	263	125	147	47.4912

#otherMatches

#Struct PSSM
ssssssssccc]bb:::::::g	chr1:1414620-1414895(+)$1	275	158	180	32.5789
::::::::::::::::DDDD}B	chr11:43455588-43455850(+)$1	262	175	197	39.7719
@@@@@@@@EEEEEZZZBB}EEE	chr7:4287687-4287924(+)$1	237	209	231	40.4736
DDDDBB@@@@@@@@@@GGGGGG	chr2:101458002-101458235(+)$1	233	127	149	49.0701
DDD:::::::::::::::::::	chr11:68583959-68584282(-)$1	323	34	56	47.4912
nnnna333cccbb:::::::::	chr4:5829154-5829409(+)$1	255	139	161	35.1228
B:::::::::::::::::ccc$	chr19:6717367-6717583(-)$1	216	140	162	47.4912
#ccc"""ffffff+++++++++	chr21:44090840-44091099(+)$1	259	69	91	42.1403
))))))ccc[ggggggg&&&&&	chr16:976141-976381(-)$1	240	62	84	37.2280
::::::::::::::::::::::	chr17:43242577-43242918(+)$1	341	67	89	35.4736
qqqqqqqqdddd::::::::::	chr13:113616221-113616480(+)$1	259	76	98	41.7894
ccmmmmccc:::::::::::::	chr12:57599603-57599848(+)$1	245	212	234	32.1403
@@@@@@@@@@@@EEEEE}BB\\	chrX:76830228-76830525(-)$1	297	158	180	47.4035
bb]dddd:::eeeeeooooooe	chr16:81504455-81504663(+)$1	208	94	116	36.7017
eeee+++++++++++++dddd'	chr15:64941444-64941734(+)$1	290	125	147	37.8421
NNNNNDDDDKKFFFFFFNNNNN	chr7:784981-785253(+)$1	272	74	96	45.2105
ccc::FFFFFF:::EEEEELLL	chr14:105176834-105177088(+)$1	254	63	85	34.2456
wwwwwwwffffff55555dddd	chr5:86582485-86582745(+)$1	260	132	154	33.0175
^^^^^^^^eeeee:::::::::	chr17:76889581-76889862(-)$1	281	175	197	38.4561
:::::eeeee^^^^^^^^^^^^	chr4:5827479-5827764(+)$1	285	97	119	38.4561
''''''''eeeee[aooooooa	chr2:101458197-101458405(+)$1	208	35	57	38.2807
::::::::::::::::::::::	chr19:6717351-6717559(-)$1	208	116	138	47.4912
:::::::ddddoooooodddd=	chr20:36001616-36001856(+)$1	240	113	135	36.0000
FFFFF::::::::::FFFFFF{	chr17:47438327-47438577(-)$1	250	77	99	31.4385
::::::::::::::::BB{FFF	chr4:139134428-139134685(-)$1	257	7	29	35.9122
]bb55555bb]bb333bb]bb2	chr7:157632794-157633022(-)$1	228	89	111	34.2456
qqqqqbb]eeeee::::::::g	chr13:113539292-113539514(+)$1	222	91	113	38.3684
!cccmmmmccc22ccc::::::	chr17:80786424-80786677(+)$1	253	62	84	38.0175
::::::::::::::::::::::	chr13:50851251-50851460(+)$1	209	3	25	35.1228
qeeeee333ggggggg::::::	chr3:114034175-114034412(-)$1	237	57	79	37.1403
cc]ccc]gggggggCCC{DDDD	chr2:101511465-101511743(+)$1	278	101	123	35.7368
::::::::::::::::::::::	chr16:46949823-46950029(+)$1	206	6	28	37.1403
ee333ggggggg::::::::::	chr3:114034260-114034517(-)$1	257	166	188	39.5087
FFFFFFCCC{A{DDDD::::::	chr21:44090899-44091177(+)$1	278	10	32	42.1403
^^^^^^^^^^hhhhhhhhdddd	chr16:11265771-11266020(+)$1	249	130	152	38.1052
C::::cccmmmmccc:::::::	chr3:127864943-127865199(-)$1	256	12	34	40.4736
:::cccooooooccc:::::::	chr11:2153128-2153335(-)$1	207	125	147	39.7719
::::::::::::::::::::::	chr11:70462988-70463203(-)$1	215	11	33	41.7017
::::::::::::::::::::::	chr1:12644891-12645097(-)$1	206	176	198	43.4561
:::::::::::::::::EEEEE	chr20:21122661-21122896(+)$1	235	81	103	41.7017
EEEE::::::::::::::bbgg	chr7:77183631-77183917(+)$1	286	121	143	35.0350
eeeee:::::::::ccc[ccco	chr15:90641644-90641917(-)$1	273	125	147	34.4210
:::::::::::::::::fffff	chr8:26487445-26487662(+)$1	217	44	66	41.0000
:::::ggggggg++++++++++	chr9:135252384-135252716(-)$1	332	60	82	39.1578
:::::DDDD::::cccwwwwww	chr12:124999998-125000242(-)$1	244	1	23	33.8947
::::::::ggggggg$$$$$ii	chr13:53040045-53040294(+)$1	249	3	25	38.1052
bqqqqqqqqbb:::::::::::	chr9:136657546-136657773(-)$1	227	13	35	40.3859
::::::::::::::::::::::	chr3:124493997-124494215(-)$1	218	126	148	36.4385
qqqqqqqiiiiiiiii::::::	chr22:47554786-47555015(+)$1	229	174	196	42.8421
^^^^^^^^^^^^^^^^^^^^^^	chr16:46949495-46949706(+)$1	211	113	135	40.7368
:::::::::::::::::dddd[	chr2:205615192-205615532(+)$1	340	149	171	42.2280
cc::::::::::::::::::::	chr9:136657202-136657422(-)$1	220	88	110	38.1929
::::::::::::::::::::::	chr5:111035293-111035575(-)$1	282	80	102	36.0000
::::::::::::::::::::::	chr19:54063110-54063329(+)$1	219	140	162	42.6666
=))))))))))ffffffmmmmf	chr2:139328562-139328845(+)$1	283	105	127	33.8070
cc::::::::ffffffmmmmff	chr16:81504665-81504873(+)$1	208	146	168	37.6666
c:::::::::::::::::ffff	chr7:6058475-6058738(+)$1	263	125	147	47.4912

#DB
........))).)).......(	chr1:1414620-1414895(+)$1	1	158	180	32.5789
................)))).)	chr11:43455588-43455850(+)$1	1	175	197	39.7719
........)))))...)).)))	chr7:4287687-4287924(+)$1	1	209	231	40.4736
))))))..........))))))	chr2:101458002-101458235(+)$1	1	127	149	49.0701
(((...................	chr11:68583959-68584282(-)$1	1	34	56	47.4912
....)...))))).........	chr4:5829154-5829409(+)$1	1	139	161	35.1228
(.................(((.	chr19:6717367-6717583(-)$1	1	140	162	47.4912
.(((...((((((.........	chr21:44090840-44091099(+)$1	1	69	91	42.1403
......(((.(((((((.....	chr16:976141-976381(-)$1	1	62	84	37.2280
......................	chr17:43242577-43242918(+)$1	1	67	89	35.4736
........))))..........	chr13:113616221-113616480(+)$1	1	76	98	41.7894
((....))).............	chr12:57599603-57599848(+)$1	1	212	234	32.1403
............))))).))..	chrX:76830228-76830525(-)$1	1	158	180	47.4035
)).))))...(((((......)	chr16:81504455-81504663(+)$1	1	94	116	36.7017
((((.............((((.	chr15:64941444-64941734(+)$1	1	125	147	37.8421
.....((((..((((((.....	chr7:784981-785253(+)$1	1	74	96	45.2105
)))..((((((...(((((...	chr14:105176834-105177088(+)$1	1	63	85	34.2456
.......)))))).....))))	chr5:86582485-86582745(+)$1	1	132	154	33.0175
........))))).........	chr17:76889581-76889862(-)$1	1	175	197	38.4561
.....(((((............	chr4:5827479-5827764(+)$1	1	97	119	38.4561
........(((((.(......)	chr2:101458197-101458405(+)$1	1	35	57	38.2807
......................	chr19:6717351-6717559(-)$1	1	116	138	47.4912
.......((((......))))(	chr20:36001616-36001856(+)$1	1	113	135	36.0000
)))))..........((((((.	chr17:47438327-47438577(-)$1	1	77	99	31.4385
................((.(((	chr4:139134428-139134685(-)$1	1	7	29	35.9122
.)).....)).))...)).)).	chr7:157632794-157633022(-)$1	1	89	111	34.2456
.....)).)))))........(	chr13:113539292-113539514(+)$1	1	91	113	38.3684
.(((....)))..)))......	chr17:80786424-80786677(+)$1	1	62	84	38.0175
......................	chr13:50851251-50851460(+)$1	1	3	25	35.1228
.)))))...)))))))......	chr3:114034175-114034412(-)$1	1	57	79	37.1403
)).))).)))))))(((.((((	chr2:101511465-101511743(+)$1	1	101	123	35.7368
......................	chr16:46949823-46950029(+)$1	1	6	28	37.1403
))...)))))))..........	chr3:114034260-114034517(-)$1	1	166	188	39.5087
(((((((((.(.((((......	chr21:44090899-44091177(+)$1	1	10	32	42.1403
..........))))))))((((	chr16:11265771-11266020(+)$1	1	130	152	38.1052
(....(((....))).......	chr3:127864943-127865199(-)$1	1	12	34	40.4736
...(((......))).......	chr11:2153128-2153335(-)$1	1	125	147	39.7719
......................	chr11:70462988-70463203(-)$1	1	11	33	41.7017
......................	chr1:12644891-12645097(-)$1	1	176	198	43.4561
.................(((((	chr20:21122661-21122896(+)$1	1	81	103	41.7017
((((..............((((	chr7:77183631-77183917(+)$1	1	121	143	35.0350
))))).........(((.(((.	chr15:90641644-90641917(-)$1	1	125	147	34.4210
.................(((((	chr8:26487445-26487662(+)$1	1	44	66	41.0000
.....(((((((..........	chr9:135252384-135252716(-)$1	1	60	82	39.1578
.....((((....(((......	chr12:124999998-125000242(-)$1	1	1	23	33.8947
........(((((((.....((	chr13:53040045-53040294(+)$1	1	3	25	38.1052
(........))...........	chr9:136657546-136657773(-)$1	1	13	35	40.3859
......................	chr3:124493997-124494215(-)$1	1	126	148	36.4385
.......)))))))))......	chr22:47554786-47555015(+)$1	1	174	196	42.8421
......................	chr16:46949495-46949706(+)$1	1	113	135	40.7368
.................((((.	chr2:205615192-205615532(+)$1	1	149	171	42.2280
))....................	chr9:136657202-136657422(-)$1	1	88	110	38.1929
......................	chr5:111035293-111035575(-)$1	1	80	102	36.0000
......................	chr19:54063110-54063329(+)$1	1	140	162	42.6666
(..........((((((....)	chr2:139328562-139328845(+)$1	1	105	127	33.8070
))........((((((....))	chr16:81504665-81504873(+)$1	1	146	168	37.6666
).................((((	chr7:6058475-6058738(+)$1	1	125	147	47.4912

#PSSM
c : 0.63	C : 0.12	u : 0.12	U : 0.03	a : 0.03	A : 0.03	g : 0.01	
a : 0.73	A : 0.08	u : 0.07	G : 0.03	U : 0.03	g : 0.01	c : 0.01	
c : 0.84	U : 0.05	C : 0.03	u : 0.01	G : 0.01	A : 0.01	a : 0.01	
a : 0.84	A : 0.12	g : 0.03	
c : 0.71	C : 0.12	u : 0.07	a : 0.05	g : 0.03	
a : 0.77	A : 0.12	g : 0.10	
c : 0.78	C : 0.12	u : 0.07	g : 0.01	
a : 0.82	A : 0.12	c : 0.03	g : 0.01	
u : 0.56	c : 0.24	U : 0.05	g : 0.05	C : 0.03	G : 0.01	A : 0.01	a : 0.01	
a : 0.64	g : 0.17	A : 0.08	u : 0.03	c : 0.01	G : 0.01	U : 0.01	
c : 0.71	u : 0.12	C : 0.10	a : 0.01	G : 0.01	g : 0.01	
a : 0.80	A : 0.10	u : 0.03	c : 0.01	C : 0.01	g : 0.01	
c : 0.45	u : 0.42	U : 0.05	C : 0.03	A : 0.01	g : 0.01	
a : 0.66	g : 0.15	A : 0.08	u : 0.07	U : 0.01	
c : 0.84	C : 0.10	u : 0.05	
a : 0.85	A : 0.08	C : 0.01	g : 0.01	c : 0.01	
c : 0.80	C : 0.07	u : 0.07	U : 0.03	g : 0.01	
a : 0.87	A : 0.07	U : 0.03	u : 0.01	
c : 0.84	C : 0.10	G : 0.01	a : 0.01	u : 0.01	
a : 0.77	A : 0.12	u : 0.08	U : 0.01	
c : 0.75	C : 0.12	u : 0.07	g : 0.03	U : 0.01	
a : 0.75	A : 0.08	g : 0.07	U : 0.05	u : 0.03	

#score	2223.929824561405
#seq	57
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_CDS_m2_run2.nuc.txt

#NT
CUUGGGC	chr12:53346403-53346682(+)$1	279	78	85	12.1111
GCUGGGC	chr20:3028353-3028593(+)$1	240	4	11	13.2222
GCUGGGC	chr20:60884721-60884983(-)$1	262	46	53	13.2222
CCUGUGC	chr6:31937195-31937452(+)$1	257	213	220	12.9047
CCUGGGC	chr3:49395414-49395811(-)$1	397	192	199	16.7936
CCUGUGC	chr7:100866916-100867196(+)$1	280	74	81	12.9047
CCCGGGC	chr6:30698657-30698962(-)$1	305	23	30	12.7460
CCUGGGC	chr11:840361-840581(-)$1	220	116	123	16.7936
ACUGGGC	chr6:33384349-33384597(-)$1	248	239	246	12.9047
CCAGGGC	chr20:17600232-17600473(-)$1	241	15	22	12.6666
CCUGGGC	chr19:49464019-49464271(+)$1	252	243	250	16.7936
CCUGGUC	chr11:64812488-64812808(-)$1	320	131	138	12.6666
CCUGGGC	chr5:176730755-176731124(+)$1	369	245	252	16.7936
CCUGGCC	chr16:88712437-88712651(-)$1	214	97	104	12.5079
CCUGGGA	chr6:31698490-31698800(-)$1	310	188	195	12.6666
CCUGGGC	chr11:46404055-46404300(+)$1	245	10	17	16.7936
CCUUGGC	chr16:2820932-2821171(+)$1	239	41	48	12.2698
CCUGAGC	chr2:242758045-242758286(+)$1	241	58	65	12.9841
CCUGGGC	chr14:103986155-103986475(-)$1	320	151	158	16.7936
CCUGGGG	chr17:73132169-73132442(-)$1	273	125	132	12.9047
CCUCGGC	chr12:56510458-56510684(+)$1	226	41	48	12.2698
UCUGGGC	chr19:5691847-5692156(-)$1	309	154	161	13.0634
CCUGAGC	chr11:63765093-63765405(+)$1	312	177	184	12.9841
CUUGGGC	chr9:117094048-117094309(+)$1	261	206	213	12.1111
UCUGGGC	chr1:46782123-46782339(+)$1	216	166	173	13.0634
CCUGGGG	chr7:43906316-43906645(-)$1	329	17	24	12.9047
CCUGGGC	chr20:34287523-34287767(+)$1	244	1	8	16.7936
CCCGGGC	chr20:62369585-62369859(+)$1	274	58	65	12.7460
CCUGGGG	chr15:79215232-79215521(-)$1	289	243	250	12.9047
CCUGGUC	chr17:18148203-18148601(-)$1	398	68	75	12.6666
ACUGGGC	chr9:140136954-140137218(+)$1	264	14	21	12.9047
CCUGGGG	chr2:220371407-220371662(+)$1	255	245	252	12.9047
GCUGGGC	chr16:29816023-29816317(+)$1	294	33	40	13.2222
CCUGGGU	chr17:27076847-27077163(+)$1	316	271	278	12.6666
CCUAGGC	chr1:161193053-161193263(-)$1	210	43	50	12.4285
CCUGGGG	chr12:120878206-120878495(+)$1	289	57	64	12.9047
CCCGGGC	chr15:90328394-90328694(-)$1	300	11	18	12.7460
GCUGGGC	chr20:30156879-30157176(+)$1	297	189	196	13.2222
CCUGGAC	chr19:18704221-18704489(-)$1	268	59	66	12.4285
CCUGGUC	chr6:41705367-41705604(-)$1	237	143	150	12.6666
CCUGCGC	chr19:1440078-1440332(+)$1	254	26	33	12.6666
CCUAGGC	chr1:161193063-161193272(-)$1	209	52	59	12.4285
UCUGGGC	chr19:36145430-36145672(+)$1	242	11	18	13.0634
CCUGGGC	chr7:99751393-99751730(+)$1	337	232	239	16.7936
CCAGGGC	chr20:25206971-25207227(+)$1	256	115	122	12.6666
ccuggcc	chr22:38352679-38352950(+)$1	271	37	44	12.5079
GCUGGGC	chr17:39679986-39680298(-)$1	312	144	151	13.2222
CCAGGGC	chr11:116703455-116703709(+)$1	254	207	214	12.6666
GCUGGGC	chr3:129274196-129274474(-)$1	278	27	34	13.2222
CCUGAGC	chr2:98263705-98263950(+)$1	245	13	20	12.9841
CCUGGGC	chr2:219679181-219679457(+)$1	276	250	257	16.7936
CCUGUGC	chr18:56063349-56063648(+)$1	299	156	163	12.9047
CCUAGGC	chr1:161193039-161193244(-)$1	205	24	31	12.4285
CCUGAGC	chr14:105219426-105219762(+)$1	336	307	314	12.9841
CCUGGGA	chr1:44443555-44443801(+)$1	246	174	181	12.6666
CCUGGUC	chr19:18499621-18499895(+)$1	274	129	136	12.6666
CCUGGGC	chr17:74383483-74383736(+)$1	253	186	193	16.7936
CCUGGGU	chr5:179263543-179263847(+)$1	304	247	254	12.6666
CCCGGGC	chr1:2125003-2125261(-)$1	258	1	8	12.7460
CCUGUGC	chr2:88423985-88424205(-)$1	220	16	23	12.9047
UCUGGGC	chr20:34214094-34214340(-)$1	246	1	8	13.0634
CCUGAGC	chr5:135397121-135397369(+)$1	248	175	182	12.9841

#otherMatches

#Struct PSSM
&&&eeee	chr14:24113939-24114160(+)$1	221	35	42	12.5079
EEEMMMM	chr12:53346403-53346682(+)$1	279	78	85	12.1111
EKKEEEE	chr20:3028353-3028593(+)$1	240	4	11	13.2222
i!!cccf	chr20:60884721-60884983(-)$1	262	46	53	13.2222
ccc22gg	chr6:31937195-31937452(+)$1	257	213	220	12.9047
qqq====	chr3:49395414-49395811(-)$1	397	192	199	16.7936
dd[ccc[	chr7:100866916-100867196(+)$1	280	74	81	12.9047
ee:DDDD	chr6:30698657-30698962(-)$1	305	23	30	12.7460
ZZZGGGG	chr11:840361-840581(-)$1	220	116	123	16.7936
EEE}CCC	chr6:33384349-33384597(-)$1	248	239	246	12.9047
#eeeee!	chr20:17600232-17600473(-)$1	241	15	22	12.6666
}A}FFFF	chr19:49464019-49464271(+)$1	252	243	250	16.7936
ooooeee	chr11:64812488-64812808(-)$1	320	131	138	12.6666
ddd]ddd	chr5:176730755-176731124(+)$1	369	245	252	16.7936
fffff55	chr16:88712437-88712651(-)$1	214	97	104	12.5079
DD{DDDD	chr6:31698490-31698800(-)$1	310	188	195	12.6666
DDD{GGG	chr11:46404055-46404300(+)$1	245	10	17	16.7936
GGGGGGG	chr16:2820932-2821171(+)$1	239	41	48	12.2698
cc]eeee	chr2:242758045-242758286(+)$1	241	58	65	12.9841
dd!!fff	chr14:103986155-103986475(-)$1	320	151	158	16.7936
!gggggg	chr17:73132169-73132442(-)$1	273	125	132	12.9047
66666dd	chr12:56510458-56510684(+)$1	226	41	48	12.2698
nnneeee	chr19:5691847-5692156(-)$1	309	154	161	13.0634
JJJJJJJ	chr11:63765093-63765405(+)$1	312	177	184	12.9841
lleeeee	chr9:117094048-117094309(+)$1	261	206	213	12.1111
seeeeed	chr1:46782123-46782339(+)$1	216	166	173	13.0634
:::ffff	chr7:43906316-43906645(-)$1	329	17	24	12.9047
BGGGGGG	chr20:34287523-34287767(+)$1	244	1	8	16.7936
g"""ccc	chr20:62369585-62369859(+)$1	274	58	65	12.7460
fffffff	chr15:79215232-79215521(-)$1	289	243	250	12.9047
bbccc]e	chr17:18148203-18148601(-)$1	398	68	75	12.6666
odddddd	chr9:140136954-140137218(+)$1	264	14	21	12.9047
}DDDDCC	chr2:220371407-220371662(+)$1	255	245	252	12.9047
eeehhhh	chr16:29816023-29816317(+)$1	294	33	40	13.2222
bbooooo	chr17:27076847-27077163(+)$1	316	271	278	12.6666
GGG{DDD	chr1:161193053-161193263(-)$1	210	43	50	12.4285
immmmii	chr12:120878206-120878495(+)$1	289	57	64	12.9047
LLLDDDD	chr15:90328394-90328694(-)$1	300	11	18	12.7460
3bb]eee	chr20:30156879-30157176(+)$1	297	189	196	13.2222
eeee22c	chr19:18704221-18704489(-)$1	268	59	66	12.4285
ddddppp	chr6:41705367-41705604(-)$1	237	143	150	12.6666
fff[avv	chr19:1440078-1440332(+)$1	254	26	33	12.6666
GGG{DDD	chr1:161193063-161193272(-)$1	209	52	59	12.4285
pppccc]	chr19:36145430-36145672(+)$1	242	11	18	13.0634
IIIIIee	chr7:99751393-99751730(+)$1	337	232	239	16.7936
nnndddd	chr20:25206971-25207227(+)$1	256	115	122	12.6666
d:EEEEE	chr22:38352679-38352950(+)$1	271	37	44	12.5079
=======	chr17:39679986-39680298(-)$1	312	144	151	13.2222
[eeeeem	chr11:116703455-116703709(+)$1	254	207	214	12.6666
eelllee	chr3:129274196-129274474(-)$1	278	27	34	13.2222
::EEEEE	chr2:98263705-98263950(+)$1	245	13	20	12.9841
GGGGGGG	chr2:219679181-219679457(+)$1	276	250	257	16.7936
eeeennn	chr18:56063349-56063648(+)$1	299	156	163	12.9047
GGG{DDD	chr1:161193039-161193244(-)$1	205	24	31	12.4285
CYYGGGG	chr14:105219426-105219762(+)$1	336	307	314	12.9841
bb:ffff	chr1:44443555-44443801(+)$1	246	174	181	12.6666
f::dddd	chr19:18499621-18499895(+)$1	274	129	136	12.6666
eeeeddd	chr17:74383483-74383736(+)$1	253	186	193	16.7936
e4444==	chr5:179263543-179263847(+)$1	304	247	254	12.6666
:HHHHHH	chr1:2125003-2125261(-)$1	258	1	8	12.7460
:eeeee"	chr2:88423985-88424205(-)$1	220	16	23	12.9047
:::eeee	chr20:34214094-34214340(-)$1	246	1	8	13.0634
g::hhhh	chr5:135397121-135397369(+)$1	248	175	182	12.9841

#DB
...((((	chr14:24113939-24114160(+)$1	1	35	42	12.5079
(((....	chr12:53346403-53346682(+)$1	1	78	85	12.1111
(..((((	chr20:3028353-3028593(+)$1	1	4	11	13.2222
(..((((	chr20:60884721-60884983(-)$1	1	46	53	13.2222
)))..))	chr6:31937195-31937452(+)$1	1	213	220	12.9047
...))))	chr3:49395414-49395811(-)$1	1	192	199	16.7936
((.(((.	chr7:100866916-100867196(+)$1	1	74	81	12.9047
)).((((	chr6:30698657-30698962(-)$1	1	23	30	12.7460
...))))	chr11:840361-840581(-)$1	1	116	123	16.7936
))).)))	chr6:33384349-33384597(-)$1	1	239	246	12.9047
.(((((.	chr20:17600232-17600473(-)$1	1	15	22	12.6666
.).))))	chr19:49464019-49464271(+)$1	1	243	250	16.7936
....)))	chr11:64812488-64812808(-)$1	1	131	138	12.6666
))).)))	chr5:176730755-176731124(+)$1	1	245	252	16.7936
)))))..	chr16:88712437-88712651(-)$1	1	97	104	12.5079
((.((((	chr6:31698490-31698800(-)$1	1	188	195	12.6666
(((.(((	chr11:46404055-46404300(+)$1	1	10	17	16.7936
(((((((	chr16:2820932-2821171(+)$1	1	41	48	12.2698
)).))))	chr2:242758045-242758286(+)$1	1	58	65	12.9841
((..(((	chr14:103986155-103986475(-)$1	1	151	158	16.7936
.((((((	chr17:73132169-73132442(-)$1	1	125	132	12.9047
.....))	chr12:56510458-56510684(+)$1	1	41	48	12.2698
...))))	chr19:5691847-5692156(-)$1	1	154	161	13.0634
(((((((	chr11:63765093-63765405(+)$1	1	177	184	12.9841
..)))))	chr9:117094048-117094309(+)$1	1	206	213	12.1111
.)))))(	chr1:46782123-46782339(+)$1	1	166	173	13.0634
...((((	chr7:43906316-43906645(-)$1	1	17	24	12.9047
(((((((	chr20:34287523-34287767(+)$1	1	1	8	16.7936
(...(((	chr20:62369585-62369859(+)$1	1	58	65	12.7460
)))))))	chr15:79215232-79215521(-)$1	1	243	250	12.9047
))))).)	chr17:18148203-18148601(-)$1	1	68	75	12.6666
.))))))	chr9:140136954-140137218(+)$1	1	14	21	12.9047
.))))))	chr2:220371407-220371662(+)$1	1	245	252	12.9047
(((((((	chr16:29816023-29816317(+)$1	1	33	40	13.2222
((.....	chr17:27076847-27077163(+)$1	1	271	278	12.6666
(((.(((	chr1:161193053-161193263(-)$1	1	43	50	12.4285
(....))	chr12:120878206-120878495(+)$1	1	57	64	12.9047
...((((	chr15:90328394-90328694(-)$1	1	11	18	12.7460
.)).)))	chr20:30156879-30157176(+)$1	1	189	196	13.2222
))))..)	chr19:18704221-18704489(-)$1	1	59	66	12.4285
((((...	chr6:41705367-41705604(-)$1	1	143	150	12.6666
(((.(..	chr19:1440078-1440332(+)$1	1	26	33	12.6666
(((.(((	chr1:161193063-161193272(-)$1	1	52	59	12.4285
...))).	chr19:36145430-36145672(+)$1	1	11	18	13.0634
(((((((	chr7:99751393-99751730(+)$1	1	232	239	16.7936
...))))	chr20:25206971-25207227(+)$1	1	115	122	12.6666
).(((((	chr22:38352679-38352950(+)$1	1	37	44	12.5079
)))))))	chr17:39679986-39680298(-)$1	1	144	151	13.2222
.(((((.	chr11:116703455-116703709(+)$1	1	207	214	12.6666
((...))	chr3:129274196-129274474(-)$1	1	27	34	13.2222
..(((((	chr2:98263705-98263950(+)$1	1	13	20	12.9841
)))))))	chr2:219679181-219679457(+)$1	1	250	257	16.7936
((((...	chr18:56063349-56063648(+)$1	1	156	163	12.9047
(((.(((	chr1:161193039-161193244(-)$1	1	24	31	12.4285
)..))))	chr14:105219426-105219762(+)$1	1	307	314	12.9841
)).((((	chr1:44443555-44443801(+)$1	1	174	181	12.6666
)..((((	chr19:18499621-18499895(+)$1	1	129	136	12.6666
)))))))	chr17:74383483-74383736(+)$1	1	186	193	16.7936
)....))	chr5:179263543-179263847(+)$1	1	247	254	12.6666
.((((((	chr1:2125003-2125261(-)$1	1	1	8	12.7460
.(((((.	chr2:88423985-88424205(-)$1	1	16	23	12.9047
...((((	chr20:34214094-34214340(-)$1	1	1	8	13.0634
)..((((	chr5:135397121-135397369(+)$1	1	175	182	12.9841

#PSSM
C : 0.79	G : 0.09	U : 0.06	A : 0.03	c : 0.01	
C : 0.95	U : 0.03	c : 0.01	
U : 0.85	C : 0.06	A : 0.04	G : 0.01	u : 0.01	
G : 0.90	A : 0.04	U : 0.01	C : 0.01	g : 0.01	
G : 0.82	A : 0.07	U : 0.06	C : 0.01	g : 0.01	
G : 0.88	U : 0.06	C : 0.01	A : 0.01	c : 0.01	
C : 0.84	G : 0.07	A : 0.03	U : 0.03	c : 0.01	

#score	845.380952380951
#seq	63
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_transcript_m1_run1.nuc.txt

#NT
guu	chr22:20070730-20070976(+)$1	246	19	22	9.0000
guu	chr5:91533540-91533808(+)$1	268	113	116	9.0000
GUU	chr20:4874864-4875127(-)$1	263	7	10	9.0000
GUU	chr3:71497136-71497384(-)$1	248	112	115	9.0000
GUU	chr6:2082519-2082760(-)$1	241	5	8	9.0000
GUU	chr16:84753715-84754011(+)$1	296	81	84	9.0000
GUU	chr14:39759883-39760191(+)$1	308	70	73	9.0000
GUU	chr2:164557205-164557464(-)$1	259	4	7	9.0000
GUU	chr2:240298552-240298821(-)$1	269	83	86	9.0000
GUU	chr10:105409947-105410189(-)$1	242	19	22	9.0000
guu	chr4:452218-452513(-)$1	295	63	66	9.0000
guu	chr10:114914274-114914520(+)$1	246	34	37	9.0000
guu	chr2:242697412-242697666(+)$1	254	8	11	9.0000
guu	chr10:81510074-81510316(-)$1	242	15	18	9.0000
GUU	chr6:87865540-87865795(+)$1	255	99	102	9.0000
guu	chr7:1137794-1138035(-)$1	241	28	31	9.0000
guu	chr2:102497315-102497563(+)$1	248	24	27	9.0000
GUU	chr17:55387162-55387393(+)$1	231	35	38	9.0000
GUU	chr22:47172309-47172571(+)$1	262	59	62	9.0000
GUU	chr7:98705557-98705847(-)$1	290	48	51	9.0000
GUU	chr5:135470635-135470909(+)$1	274	0	3	9.0000
GUU	chr2:48543049-48543308(+)$1	259	53	56	9.0000
guu	chr7:94594275-94594526(+)$1	251	25	28	9.0000
GUU	chr2:192133422-192133773(+)$1	351	18	21	9.0000
guu	chr7:921393-921616(+)$1	223	42	45	9.0000
guu	chr4:2619807-2620111(+)$1	304	16	19	9.0000
GUU	chr6:131325480-131325755(-)$1	275	73	76	9.0000
GUU	chr7:139467038-139467303(-)$1	265	73	76	9.0000
guu	chr2:131814582-131814866(-)$1	284	1	4	9.0000
GUU	chr16:87380055-87380286(-)$1	231	39	42	9.0000
GUU	chr7:44439534-44439795(-)$1	261	41	44	9.0000
GUU	chr20:62893923-62894174(+)$1	251	64	67	9.0000
GUU	chr15:99231290-99231551(+)$1	261	1	4	9.0000
GUU	chr1:21947611-21947854(-)$1	243	7	10	9.0000
GUU	chr7:158193320-158193580(-)$1	260	11	14	9.0000
GUU	chr16:73034469-73034737(-)$1	268	3	6	9.0000
guu	chr16:9040555-9040784(-)$1	229	0	3	9.0000
guu	chr2:101464532-101464743(+)$1	211	0	3	9.0000
GUU	chr2:99119421-99119761(+)$1	340	3	6	9.0000
GUU	chr7:110882361-110882602(-)$1	241	58	61	9.0000
GUU	chr21:46281215-46281492(-)$1	277	54	57	9.0000
GUU	chr7:127407229-127407499(+)$1	270	23	26	9.0000
GUU	chr2:102409782-102410039(+)$1	257	4	7	9.0000
GUU	chr11:62308527-62308777(-)$1	250	31	34	9.0000
guu	chr22:19074596-19074926(-)$1	330	1	4	9.0000
guu	chr11:68279347-68279680(+)$1	333	24	27	9.0000
guu	chr8:457416-457754(-)$1	338	4	7	9.0000
GUU	chr20:61557298-61557599(-)$1	301	108	111	9.0000
guu	chr15:76217564-76217828(+)$1	264	53	56	9.0000
GUU	chr2:102316284-102316540(+)$1	256	4	7	9.0000
GUU	chr1:27025052-27025331(+)$1	279	23	26	9.0000
GUU	chr6:168232774-168233040(+)$1	266	81	84	9.0000
GUU	chr15:99309043-99309352(+)$1	309	24	27	9.0000
guu	chr19:35765639-35765901(+)$1	262	5	8	9.0000
GUU	chr2:134974794-134975037(+)$1	243	63	66	9.0000
GUU	chr3:171845083-171845326(+)$1	243	13	16	9.0000
GUU	chr10:82258580-82258922(+)$1	342	93	96	9.0000
guu	chr8:100091233-100091484(+)$1	251	4	7	9.0000
GUU	chr19:57350864-57351076(-)$1	212	11	14	9.0000
GUU	chr22:38901658-38901912(-)$1	254	3	6	9.0000
guu	chr12:11267945-11268199(-)$1	254	6	9	9.0000
guu	chr16:24784422-24784691(+)$1	269	57	60	9.0000
GUU	chr2:54195552-54195840(-)$1	288	62	65	9.0000
GUU	chr2:102385347-102385632(+)$1	285	0	3	9.0000
GUU	chr19:7515263-7515507(+)$1	244	2	5	9.0000
GUU	chr13:98928246-98928490(+)$1	244	68	71	9.0000
GUU	chr17:77952931-77953235(-)$1	304	276	279	9.0000
GUU	chr3:179041211-179041507(+)$1	296	15	18	9.0000
GUU	chr6:158981685-158981899(+)$1	214	119	122	9.0000
GUU	chr14:99904131-99904409(-)$1	278	9	12	9.0000
guu	chrX:132706841-132707065(-)$1	224	1	4	9.0000
GUU	chr3:57749550-57749823(+)$1	273	7	10	9.0000
GUU	chr5:67547557-67547854(+)$1	297	19	22	9.0000
GUU	chr22:33950191-33950440(-)$1	249	10	13	9.0000
GUU	chr6:107849905-107850177(+)$1	272	17	20	9.0000
guu	chr16:24752669-24752969(+)$1	300	85	88	9.0000
guu	chr2:73036934-73037230(-)$1	296	15	18	9.0000
guu	chr6:111790728-111791008(-)$1	280	63	66	9.0000
GUU	chr16:89361087-89361332(-)$1	245	65	68	9.0000
GUU	chr15:25335532-25335774(+)$1	242	29	32	9.0000
GUU	chr5:14405133-14405400(+)$1	267	7	10	9.0000
GUU	chr9:107618507-107618841(-)$1	334	96	99	9.0000
guu	chr20:30981088-30981320(+)$1	232	25	28	9.0000
guu	chr10:21989353-21989588(+)$1	235	2	5	9.0000
guu	chr17:4583100-4583353(-)$1	253	48	51	9.0000
guu	chr11:102287383-102287613(-)$1	230	22	25	9.0000
GUU	chr15:25335715-25336024(+)$1	309	94	97	9.0000
guu	chr21:38777433-38777662(+)$1	229	56	59	9.0000
GUU	chr1:91401760-91402042(-)$1	282	33	36	9.0000
guu	chr7:11134178-11134420(+)$1	242	55	58	9.0000
GUU	chr1:2180614-2180879(+)$1	265	53	56	9.0000
GUU	chr7:91763066-91763312(-)$1	246	57	60	9.0000
GUU	chr2:242251533-242251793(-)$1	260	41	44	9.0000
GUU	chr4:1907197-1907463(+)$1	266	38	41	9.0000
GUU	chr5:1284760-1285008(-)$1	248	82	85	9.0000
GUU	chr17:3499622-3499859(-)$1	237	4	7	9.0000
guu	chr8:48261454-48261712(+)$1	258	28	31	9.0000
GUU	chr19:57349418-57349641(-)$1	223	66	69	9.0000
GUU	chr16:25025827-25026077(-)$1	250	3	6	9.0000

#otherMatches

#Struct PSSM
JJJ	chr1:228783334-228783587(+)$1	253	4	7	9.0000
ggg	chr22:20070730-20070976(+)$1	246	19	22	9.0000
$$a	chr5:91533540-91533808(+)$1	268	113	116	9.0000
c[g	chr20:4874864-4875127(-)$1	263	7	10	9.0000
eoo	chr3:71497136-71497384(-)$1	248	112	115	9.0000
f!!	chr6:2082519-2082760(-)$1	241	5	8	9.0000
[hh	chr16:84753715-84754011(+)$1	296	81	84	9.0000
GGG	chr14:39759883-39760191(+)$1	308	70	73	9.0000
HHH	chr2:164557205-164557464(-)$1	259	4	7	9.0000
qqq	chr2:240298552-240298821(-)$1	269	83	86	9.0000
KKH	chr10:105409947-105410189(-)$1	242	19	22	9.0000
lld	chr4:452218-452513(-)$1	295	63	66	9.0000
iii	chr10:114914274-114914520(+)$1	246	34	37	9.0000
NNN	chr2:242697412-242697666(+)$1	254	8	11	9.0000
DDD	chr10:81510074-81510316(-)$1	242	15	18	9.0000
h""	chr6:87865540-87865795(+)$1	255	99	102	9.0000
D::	chr7:1137794-1138035(-)$1	241	28	31	9.0000
:::	chr2:102497315-102497563(+)$1	248	24	27	9.0000
[ff	chr17:55387162-55387393(+)$1	231	35	38	9.0000
eee	chr22:47172309-47172571(+)$1	262	59	62	9.0000
::C	chr7:98705557-98705847(-)$1	290	48	51	9.0000
:ff	chr5:135470635-135470909(+)$1	274	0	3	9.0000
b22	chr2:48543049-48543308(+)$1	259	53	56	9.0000
:::	chr7:94594275-94594526(+)$1	251	25	28	9.0000
fff	chr2:192133422-192133773(+)$1	351	18	21	9.0000
777	chr7:921393-921616(+)$1	223	42	45	9.0000
c!!	chr4:2619807-2620111(+)$1	304	16	19	9.0000
hhb	chr6:131325480-131325755(-)$1	275	73	76	9.0000
+++	chr7:139467038-139467303(-)$1	265	73	76	9.0000
ccc	chr2:131814582-131814866(-)$1	284	1	4	9.0000
333	chr16:87380055-87380286(-)$1	231	39	42	9.0000
EEE	chr7:44439534-44439795(-)$1	261	41	44	9.0000
ee:	chr20:62893923-62894174(+)$1	251	64	67	9.0000
:::	chr15:99231290-99231551(+)$1	261	1	4	9.0000
DD{	chr1:21947611-21947854(-)$1	243	7	10	9.0000
ERR	chr7:158193320-158193580(-)$1	260	11	14	9.0000
ggg	chr16:73034469-73034737(-)$1	268	3	6	9.0000
:::	chr16:9040555-9040784(-)$1	229	0	3	9.0000
:::	chr2:101464532-101464743(+)$1	211	0	3	9.0000
eee	chr2:99119421-99119761(+)$1	340	3	6	9.0000
a[c	chr7:110882361-110882602(-)$1	241	58	61	9.0000
odd	chr21:46281215-46281492(-)$1	277	54	57	9.0000
KJJ	chr7:127407229-127407499(+)$1	270	23	26	9.0000
{CC	chr2:102409782-102410039(+)$1	257	4	7	9.0000
eee	chr11:62308527-62308777(-)$1	250	31	34	9.0000
:::	chr22:19074596-19074926(-)$1	330	1	4	9.0000
NNN	chr11:68279347-68279680(+)$1	333	24	27	9.0000
HHH	chr8:457416-457754(-)$1	338	4	7	9.0000
ggg	chr20:61557298-61557599(-)$1	301	108	111	9.0000
eee	chr15:76217564-76217828(+)$1	264	53	56	9.0000
:::	chr2:102316284-102316540(+)$1	256	4	7	9.0000
bbs	chr1:27025052-27025331(+)$1	279	23	26	9.0000
ggg	chr6:168232774-168233040(+)$1	266	81	84	9.0000
KKG	chr15:99309043-99309352(+)$1	309	24	27	9.0000
DKK	chr19:35765639-35765901(+)$1	262	5	8	9.0000
CCC	chr2:134974794-134975037(+)$1	243	63	66	9.0000
HHH	chr3:171845083-171845326(+)$1	243	13	16	9.0000
eee	chr10:82258580-82258922(+)$1	342	93	96	9.0000
:::	chr8:100091233-100091484(+)$1	251	4	7	9.0000
MMM	chr19:57350864-57351076(-)$1	212	11	14	9.0000
CCC	chr22:38901658-38901912(-)$1	254	3	6	9.0000
ggg	chr12:11267945-11268199(-)$1	254	6	9	9.0000
ooo	chr16:24784422-24784691(+)$1	269	57	60	9.0000
gg4	chr2:54195552-54195840(-)$1	288	62	65	9.0000
:dd	chr2:102385347-102385632(+)$1	285	0	3	9.0000
:::	chr19:7515263-7515507(+)$1	244	2	5	9.0000
ggg	chr13:98928246-98928490(+)$1	244	68	71	9.0000
dhh	chr17:77952931-77953235(-)$1	304	276	279	9.0000
aqq	chr3:179041211-179041507(+)$1	296	15	18	9.0000
ggg	chr6:158981685-158981899(+)$1	214	119	122	9.0000
MMM	chr14:99904131-99904409(-)$1	278	9	12	9.0000
:::	chrX:132706841-132707065(-)$1	224	1	4	9.0000
HHH	chr3:57749550-57749823(+)$1	273	7	10	9.0000
FF:	chr5:67547557-67547854(+)$1	297	19	22	9.0000
JJJ	chr22:33950191-33950440(-)$1	249	10	13	9.0000
EEE	chr6:107849905-107850177(+)$1	272	17	20	9.0000
:::	chr16:24752669-24752969(+)$1	300	85	88	9.0000
:::	chr2:73036934-73037230(-)$1	296	15	18	9.0000
{HH	chr6:111790728-111791008(-)$1	280	63	66	9.0000
e::	chr16:89361087-89361332(-)$1	245	65	68	9.0000
:::	chr15:25335532-25335774(+)$1	242	29	32	9.0000
{HH	chr5:14405133-14405400(+)$1	267	7	10	9.0000
bb[	chr9:107618507-107618841(-)$1	334	96	99	9.0000
d33	chr20:30981088-30981320(+)$1	232	25	28	9.0000
:::	chr10:21989353-21989588(+)$1	235	2	5	9.0000
qqq	chr17:4583100-4583353(-)$1	253	48	51	9.0000
ff4	chr11:102287383-102287613(-)$1	230	22	25	9.0000
ooo	chr15:25335715-25336024(+)$1	309	94	97	9.0000
!cc	chr21:38777433-38777662(+)$1	229	56	59	9.0000
f##	chr1:91401760-91402042(-)$1	282	33	36	9.0000
CCC	chr7:11134178-11134420(+)$1	242	55	58	9.0000
eoo	chr1:2180614-2180879(+)$1	265	53	56	9.0000
ggg	chr7:91763066-91763312(-)$1	246	57	60	9.0000
boo	chr2:242251533-242251793(-)$1	260	41	44	9.0000
lll	chr4:1907197-1907463(+)$1	266	38	41	9.0000
cc[	chr5:1284760-1285008(-)$1	248	82	85	9.0000
eee	chr17:3499622-3499859(-)$1	237	4	7	9.0000
eee	chr8:48261454-48261712(+)$1	258	28	31	9.0000
hhh	chr19:57349418-57349641(-)$1	223	66	69	9.0000
dcc	chr16:25025827-25026077(-)$1	250	3	6	9.0000

#DB
(((	chr1:228783334-228783587(+)$1	1	4	7	9.0000
(((	chr22:20070730-20070976(+)$1	1	19	22	9.0000
..(	chr5:91533540-91533808(+)$1	1	113	116	9.0000
(.(	chr20:4874864-4875127(-)$1	1	7	10	9.0000
(..	chr3:71497136-71497384(-)$1	1	112	115	9.0000
(..	chr6:2082519-2082760(-)$1	1	5	8	9.0000
.((	chr16:84753715-84754011(+)$1	1	81	84	9.0000
(((	chr14:39759883-39760191(+)$1	1	70	73	9.0000
(((	chr2:164557205-164557464(-)$1	1	4	7	9.0000
...	chr2:240298552-240298821(-)$1	1	83	86	9.0000
..(	chr10:105409947-105410189(-)$1	1	19	22	9.0000
..)	chr4:452218-452513(-)$1	1	63	66	9.0000
(((	chr10:114914274-114914520(+)$1	1	34	37	9.0000
...	chr2:242697412-242697666(+)$1	1	8	11	9.0000
(((	chr10:81510074-81510316(-)$1	1	15	18	9.0000
(..	chr6:87865540-87865795(+)$1	1	99	102	9.0000
(..	chr7:1137794-1138035(-)$1	1	28	31	9.0000
...	chr2:102497315-102497563(+)$1	1	24	27	9.0000
.((	chr17:55387162-55387393(+)$1	1	35	38	9.0000
)))	chr22:47172309-47172571(+)$1	1	59	62	9.0000
..(	chr7:98705557-98705847(-)$1	1	48	51	9.0000
.((	chr5:135470635-135470909(+)$1	1	0	3	9.0000
)..	chr2:48543049-48543308(+)$1	1	53	56	9.0000
...	chr7:94594275-94594526(+)$1	1	25	28	9.0000
)))	chr2:192133422-192133773(+)$1	1	18	21	9.0000
...	chr7:921393-921616(+)$1	1	42	45	9.0000
(..	chr4:2619807-2620111(+)$1	1	16	19	9.0000
))(	chr6:131325480-131325755(-)$1	1	73	76	9.0000
...	chr7:139467038-139467303(-)$1	1	73	76	9.0000
(((	chr2:131814582-131814866(-)$1	1	1	4	9.0000
...	chr16:87380055-87380286(-)$1	1	39	42	9.0000
(((	chr7:44439534-44439795(-)$1	1	41	44	9.0000
)).	chr20:62893923-62894174(+)$1	1	64	67	9.0000
...	chr15:99231290-99231551(+)$1	1	1	4	9.0000
((.	chr1:21947611-21947854(-)$1	1	7	10	9.0000
(..	chr7:158193320-158193580(-)$1	1	11	14	9.0000
(((	chr16:73034469-73034737(-)$1	1	3	6	9.0000
...	chr16:9040555-9040784(-)$1	1	0	3	9.0000
...	chr2:101464532-101464743(+)$1	1	0	3	9.0000
(((	chr2:99119421-99119761(+)$1	1	3	6	9.0000
(.(	chr7:110882361-110882602(-)$1	1	58	61	9.0000
.))	chr21:46281215-46281492(-)$1	1	54	57	9.0000
.((	chr7:127407229-127407499(+)$1	1	23	26	9.0000
.((	chr2:102409782-102410039(+)$1	1	4	7	9.0000
(((	chr11:62308527-62308777(-)$1	1	31	34	9.0000
...	chr22:19074596-19074926(-)$1	1	1	4	9.0000
...	chr11:68279347-68279680(+)$1	1	24	27	9.0000
(((	chr8:457416-457754(-)$1	1	4	7	9.0000
(((	chr20:61557298-61557599(-)$1	1	108	111	9.0000
)))	chr15:76217564-76217828(+)$1	1	53	56	9.0000
...	chr2:102316284-102316540(+)$1	1	4	7	9.0000
((.	chr1:27025052-27025331(+)$1	1	23	26	9.0000
)))	chr6:168232774-168233040(+)$1	1	81	84	9.0000
..(	chr15:99309043-99309352(+)$1	1	24	27	9.0000
(..	chr19:35765639-35765901(+)$1	1	5	8	9.0000
(((	chr2:134974794-134975037(+)$1	1	63	66	9.0000
(((	chr3:171845083-171845326(+)$1	1	13	16	9.0000
(((	chr10:82258580-82258922(+)$1	1	93	96	9.0000
...	chr8:100091233-100091484(+)$1	1	4	7	9.0000
...	chr19:57350864-57351076(-)$1	1	11	14	9.0000
(((	chr22:38901658-38901912(-)$1	1	3	6	9.0000
(((	chr12:11267945-11268199(-)$1	1	6	9	9.0000
...	chr16:24784422-24784691(+)$1	1	57	60	9.0000
)).	chr2:54195552-54195840(-)$1	1	62	65	9.0000
.((	chr2:102385347-102385632(+)$1	1	0	3	9.0000
...	chr19:7515263-7515507(+)$1	1	2	5	9.0000
)))	chr13:98928246-98928490(+)$1	1	68	71	9.0000
)))	chr17:77952931-77953235(-)$1	1	276	279	9.0000
(..	chr3:179041211-179041507(+)$1	1	15	18	9.0000
)))	chr6:158981685-158981899(+)$1	1	119	122	9.0000
...	chr14:99904131-99904409(-)$1	1	9	12	9.0000
...	chrX:132706841-132707065(-)$1	1	1	4	9.0000
(((	chr3:57749550-57749823(+)$1	1	7	10	9.0000
((.	chr5:67547557-67547854(+)$1	1	19	22	9.0000
(((	chr22:33950191-33950440(-)$1	1	10	13	9.0000
(((	chr6:107849905-107850177(+)$1	1	17	20	9.0000
...	chr16:24752669-24752969(+)$1	1	85	88	9.0000
...	chr2:73036934-73037230(-)$1	1	15	18	9.0000
.((	chr6:111790728-111791008(-)$1	1	63	66	9.0000
)..	chr16:89361087-89361332(-)$1	1	65	68	9.0000
...	chr15:25335532-25335774(+)$1	1	29	32	9.0000
.((	chr5:14405133-14405400(+)$1	1	7	10	9.0000
((.	chr9:107618507-107618841(-)$1	1	96	99	9.0000
)..	chr20:30981088-30981320(+)$1	1	25	28	9.0000
...	chr10:21989353-21989588(+)$1	1	2	5	9.0000
...	chr17:4583100-4583353(-)$1	1	48	51	9.0000
)).	chr11:102287383-102287613(-)$1	1	22	25	9.0000
...	chr15:25335715-25336024(+)$1	1	94	97	9.0000
.((	chr21:38777433-38777662(+)$1	1	56	59	9.0000
(..	chr1:91401760-91402042(-)$1	1	33	36	9.0000
(((	chr7:11134178-11134420(+)$1	1	55	58	9.0000
(..	chr1:2180614-2180879(+)$1	1	53	56	9.0000
(((	chr7:91763066-91763312(-)$1	1	57	60	9.0000
(..	chr2:242251533-242251793(-)$1	1	41	44	9.0000
...	chr4:1907197-1907463(+)$1	1	38	41	9.0000
((.	chr5:1284760-1285008(-)$1	1	82	85	9.0000
(((	chr17:3499622-3499859(-)$1	1	4	7	9.0000
(((	chr8:48261454-48261712(+)$1	1	28	31	9.0000
(((	chr19:57349418-57349641(-)$1	1	66	69	9.0000
(((	chr16:25025827-25026077(-)$1	1	3	6	9.0000

#PSSM
G : 0.67	g : 0.33	
U : 0.67	u : 0.33	
U : 0.67	u : 0.33	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_transcript_m2_run1.nuc.txt

#NT
AAAAAAUUGAAA	chr19:28267653-28267920(-)$1	267	66	78	19.1632
AAAAAGUUCAGG	chr2:109389364-109389602(+)$1	238	118	130	13.3469
AUAAUGUUUAGA	chr10:18905024-18905267(-)$1	243	161	173	11.0000
UAACAGUUGAAA	chr7:99634804-99635044(+)$1	240	30	42	13.9591
agagaauugaaa	chr2:136532838-136533143(+)$1	305	50	62	12.4285
aaaaauaugaga	chr2:188355568-188355825(-)$1	257	80	92	14.2653
caaauguuuaaa	chr17:57776755-57776994(-)$1	239	134	146	10.8979
gaaaaguugaca	chr7:47378626-47378890(-)$1	264	59	71	14.5714
AAUAAACAGAGA	chr1:155447771-155448020(-)$1	249	6	18	8.6530
UAAAGGUUGUGA	chr2:152321205-152321466(+)$1	261	15	27	9.0612
agaaaaucaaga	chr8:101306607-101306895(-)$1	288	45	57	10.1836
cuaaaguugaca	chr2:188400265-188400519(+)$1	254	101	113	11.1020
AAAAAAUGUAAA	chr6:129959652-129959873(-)$1	221	39	51	13.2448
AAACAGUUAAGC	chr8:17868700-17868943(+)$1	243	61	73	10.5918
AUAAACUUCAGA	chr7:134618753-134619037(+)$1	284	43	55	11.6122
aaaaaauucaaa	chr11:2680854-2681112(-)$1	258	99	111	16.5102
aagauggugaua	chr11:96017321-96017594(-)$1	273	35	47	8.1428
agcaaauugaua	chr13:51055872-51056162(+)$1	290	25	37	10.0816
aaaaaguugaaa	chr6:144932385-144932624(+)$1	239	22	34	20.6938
AAAAAAGCGAGA	chr2:99978046-99978320(+)$1	274	37	49	12.1224
UAAAAGUCGUGA	chr2:170493754-170494042(+)$1	288	11	23	9.3673
aacaaaaugaaa	chr9:96041996-96042249(+)$1	253	5	17	12.1224
ACACAGGUGAGA	chr19:40540668-40540931(-)$1	263	69	81	10.2857
AGAAAGAUGAGG	chr10:19636627-19636908(+)$1	281	126	138	9.2653
aaacaauagaaa	chr2:188400858-188401118(+)$1	260	61	73	13.4489
aaaugguuaaaa	chr17:75341372-75341595(+)$1	223	0	12	11.5102
aaaaacuaggaa	chr22:24771502-24771755(+)$1	253	74	86	11.0000
aaaagguucaaa	chr13:50789651-50789862(+)$1	211	56	68	14.5714
uaaaaguuaaaa	chr4:42054574-42054836(+)$1	262	199	211	14.8775
AAAUUGUAAAGA	chr2:153247187-153247448(+)$1	261	220	232	8.9591
aaggaggugaaa	chr2:63152819-63153073(+)$1	254	15	27	10.0816
AAAAGGAAGAGA	chr20:20017869-20018199(-)$1	330	93	105	10.8979
GAGAAAUUGAGA	chr20:49508847-49509103(-)$1	256	203	215	11.4081
aaacaguagaaa	chr6:170694991-170695257(+)$1	266	32	44	14.9795
aaaaaguuuuaa	chr20:18275057-18275346(+)$1	289	206	218	13.6530
AACAAAUUAAGA	chr17:27613424-27613679(-)$1	255	61	73	13.0408
ACAGAGUGGAGA	chr14:102452212-102452510(+)$1	298	22	34	10.3877
aaaaaguugaaa	chr6:144932312-144932585(+)$1	273	95	107	20.6938
AACAAGUAGAAA	chr7:91709273-91709509(+)$1	236	53	65	14.5714
acaaaguuaaaa	chr16:89431966-89432206(-)$1	240	68	80	15.0816
UAUAAGUUAAAA	chr3:142751525-142751786(+)$1	261	74	86	11.1020
aaacuguagaga	chr18:13480324-13480670(+)$1	346	42	54	11.5102
ACAAUUUUGAAA	chr2:43778919-43779170(-)$1	251	8	20	11.5102
AGAAACUGGAAA	chr6:7574225-7574487(+)$1	262	214	226	11.6122
AAGAUUUUCAGA	chr7:158197943-158198221(-)$1	278	111	123	8.3469
aaaaaaaugaaa	chr13:51057109-51057412(+)$1	303	168	180	15.6938
AAAAAGUUGAGA	chr3:37367321-37367525(+)$1	204	149	161	20.3877
aaauaguuaagc	chr3:197261186-197261418(-)$1	232	75	87	10.2857

#otherMatches

#Struct PSSM
::::::::::::	chr6:47948690-47948921(-)$1	231	31	43	16.6122
4444ggggggg2	chr19:28267653-28267920(-)$1	267	66	78	19.1632
tttttttttttg	chr2:109389364-109389602(+)$1	238	118	130	13.3469
>>>>>bb]eeee	chr10:18905024-18905267(-)$1	243	161	173	11.0000
:::::ggggggg	chr7:99634804-99635044(+)$1	240	30	42	13.9591
::::::ddddnn	chr2:136532838-136533143(+)$1	305	50	62	12.4285
::::::::::::	chr2:188355568-188355825(-)$1	257	80	92	14.2653
::::ddddllld	chr17:57776755-57776994(-)$1	239	134	146	10.8979
b4444ccc9999	chr7:47378626-47378890(-)$1	264	59	71	14.5714
::::::::::dd	chr1:155447771-155448020(-)$1	249	6	18	8.6530
c!!=========	chr2:152321205-152321466(+)$1	261	15	27	9.0612
bb[bb!!ammmm	chr8:101306607-101306895(-)$1	288	45	57	10.1836
ccceeeee22a2	chr2:188400265-188400519(+)$1	254	101	113	11.1020
ttttttttttti	chr6:129959652-129959873(-)$1	221	39	51	13.2448
LLLDDDD{BBLL	chr8:17868700-17868943(+)$1	243	61	73	10.5918
nnnnndddd:::	chr7:134618753-134619037(+)$1	284	43	55	11.6122
:::::::cccnn	chr11:2680854-2681112(-)$1	258	99	111	16.5102
vvvvvvvvvvvv	chr11:96017321-96017594(-)$1	273	35	47	8.1428
{CCC::CCC{GG	chr13:51055872-51056162(+)$1	290	25	37	10.0816
:ggggggglllg	chr6:144932385-144932624(+)$1	239	22	34	20.6938
ttttttccc:::	chr2:99978046-99978320(+)$1	274	37	49	12.1224
nnnncccccc::	chr2:170493754-170494042(+)$1	288	11	23	9.3673
ee!!dddd[eee	chr9:96041996-96042249(+)$1	253	5	17	12.1224
zzzzzeeeee]d	chr19:40540668-40540931(-)$1	263	69	81	10.2857
e:GGGGGGGKKD	chr10:19636627-19636908(+)$1	281	126	138	9.2653
ooooeeeee444	chr2:188400858-188401118(+)$1	260	61	73	13.4489
::::::::::::	chr17:75341372-75341595(+)$1	223	0	12	11.5102
e4444ddddbb:	chr22:24771502-24771755(+)$1	253	74	86	11.0000
ppppdddd22ee	chr13:50789651-50789862(+)$1	211	56	68	14.5714
::::::::::::	chr4:42054574-42054836(+)$1	262	199	211	14.8775
hhhhhhh::ccc	chr2:153247187-153247448(+)$1	261	220	232	8.9591
:::EEEEE::::	chr2:63152819-63153073(+)$1	254	15	27	10.0816
:::::EEEEEYY	chr20:20017869-20018199(-)$1	330	93	105	10.8979
C}FFFFFF????	chr20:49508847-49509103(-)$1	256	203	215	11.4081
::::::::::::	chr6:170694991-170695257(+)$1	266	32	44	14.9795
vvvhhhhhhhh:	chr20:18275057-18275346(+)$1	289	206	218	13.6530
""bb[cccccc!	chr17:27613424-27613679(-)$1	255	61	73	13.0408
c!!ffffff[bb	chr14:102452212-102452510(+)$1	298	22	34	10.3877
:ggggggglllg	chr6:144932312-144932585(+)$1	273	95	107	20.6938
ddd]dddd5555	chr7:91709273-91709509(+)$1	236	53	65	14.5714
:::::cccoooo	chr16:89431966-89432206(-)$1	240	68	80	15.0816
::::::::::::	chr3:142751525-142751786(+)$1	261	74	86	11.1020
::eeeeemmmme	chr18:13480324-13480670(+)$1	346	42	54	11.5102
I::ffffffnnn	chr2:43778919-43779170(-)$1	251	8	20	11.5102
fff:DDDD~~~~	chr6:7574225-7574487(+)$1	262	214	226	11.6122
d]ccc::::hhh	chr7:158197943-158198221(-)$1	278	111	123	8.3469
::::::::DDDD	chr13:51057109-51057412(+)$1	303	168	180	15.6938
:::::ccc[ggg	chr3:37367321-37367525(+)$1	204	149	161	20.3877
d[ffffffnnnn	chr3:197261186-197261418(-)$1	232	75	87	10.2857

#DB
............	chr6:47948690-47948921(-)$1	1	31	43	16.6122
....))))))).	chr19:28267653-28267920(-)$1	1	66	78	19.1632
...........)	chr2:109389364-109389602(+)$1	1	118	130	13.3469
.....)).))))	chr10:18905024-18905267(-)$1	1	161	173	11.0000
.....(((((((	chr7:99634804-99635044(+)$1	1	30	42	13.9591
......((((..	chr2:136532838-136533143(+)$1	1	50	62	12.4285
............	chr2:188355568-188355825(-)$1	1	80	92	14.2653
....((((...)	chr17:57776755-57776994(-)$1	1	134	146	10.8979
)....)))....	chr7:47378626-47378890(-)$1	1	59	71	14.5714
..........((	chr1:155447771-155448020(-)$1	1	6	18	8.6530
(..(((((((((	chr2:152321205-152321466(+)$1	1	15	27	9.0612
((.((..(....	chr8:101306607-101306895(-)$1	1	45	57	10.1836
))))))))..).	chr2:188400265-188400519(+)$1	1	101	113	11.1020
...........)	chr6:129959652-129959873(-)$1	1	39	51	13.2448
...((((.((..	chr8:17868700-17868943(+)$1	1	61	73	10.5918
.....))))...	chr7:134618753-134619037(+)$1	1	43	55	11.6122
.......(((..	chr11:2680854-2681112(-)$1	1	99	111	16.5102
............	chr11:96017321-96017594(-)$1	1	35	47	8.1428
.(((..(((.((	chr13:51055872-51056162(+)$1	1	25	37	10.0816
.(((((((...)	chr6:144932385-144932624(+)$1	1	22	34	20.6938
......)))...	chr2:99978046-99978320(+)$1	1	37	49	12.1224
....))))))..	chr2:170493754-170494042(+)$1	1	11	23	9.3673
((..((((.(((	chr9:96041996-96042249(+)$1	1	5	17	12.1224
.....))))).)	chr19:40540668-40540931(-)$1	1	69	81	10.2857
).(((((((..(	chr10:19636627-19636908(+)$1	1	126	138	9.2653
....)))))...	chr2:188400858-188401118(+)$1	1	61	73	13.4489
............	chr17:75341372-75341595(+)$1	1	0	12	11.5102
)....)))))).	chr22:24771502-24771755(+)$1	1	74	86	11.0000
....))))..))	chr13:50789651-50789862(+)$1	1	56	68	14.5714
............	chr4:42054574-42054836(+)$1	1	199	211	14.8775
)))))))..(((	chr2:153247187-153247448(+)$1	1	220	232	8.9591
...(((((....	chr2:63152819-63153073(+)$1	1	15	27	10.0816
.....)))))..	chr20:20017869-20018199(-)$1	1	93	105	10.8979
).))))))....	chr20:49508847-49509103(-)$1	1	203	215	11.4081
............	chr6:170694991-170695257(+)$1	1	32	44	14.9795
...)))))))).	chr20:18275057-18275346(+)$1	1	206	218	13.6530
..((.((((((.	chr17:27613424-27613679(-)$1	1	61	73	13.0408
(..((((((.((	chr14:102452212-102452510(+)$1	1	22	34	10.3877
.(((((((...)	chr6:144932312-144932585(+)$1	1	95	107	20.6938
))).))))....	chr7:91709273-91709509(+)$1	1	53	65	14.5714
.....(((....	chr16:89431966-89432206(-)$1	1	68	80	15.0816
............	chr3:142751525-142751786(+)$1	1	74	86	11.1020
..(((((....)	chr18:13480324-13480670(+)$1	1	42	54	11.5102
(..((((((...	chr2:43778919-43779170(-)$1	1	8	20	11.5102
))).))))....	chr6:7574225-7574487(+)$1	1	214	226	11.6122
).)))....(((	chr7:158197943-158198221(-)$1	1	111	123	8.3469
........))))	chr13:51057109-51057412(+)$1	1	168	180	15.6938
.....(((.(((	chr3:37367321-37367525(+)$1	1	149	161	20.3877
(.((((((....	chr3:197261186-197261418(-)$1	1	75	87	10.2857

#PSSM
a : 0.42	A : 0.38	U : 0.08	c : 0.04	g : 0.02	u : 0.02	G : 0.02	
a : 0.40	A : 0.34	g : 0.06	C : 0.06	U : 0.04	G : 0.04	u : 0.02	c : 0.02	
a : 0.42	A : 0.36	U : 0.04	g : 0.04	c : 0.04	G : 0.04	C : 0.04	
A : 0.38	a : 0.36	C : 0.06	c : 0.06	g : 0.04	u : 0.04	U : 0.02	G : 0.02	
a : 0.40	A : 0.36	U : 0.08	u : 0.06	G : 0.04	g : 0.04	
g : 0.30	G : 0.28	a : 0.16	A : 0.12	C : 0.04	U : 0.04	u : 0.02	c : 0.02	
u : 0.40	U : 0.38	a : 0.06	g : 0.04	G : 0.04	A : 0.04	C : 0.02	
u : 0.38	U : 0.30	a : 0.10	A : 0.08	G : 0.06	C : 0.04	c : 0.02	
g : 0.32	G : 0.30	a : 0.10	A : 0.08	C : 0.06	U : 0.04	u : 0.04	c : 0.04	
a : 0.46	A : 0.44	U : 0.04	g : 0.02	u : 0.02	
a : 0.34	G : 0.34	A : 0.14	g : 0.08	c : 0.04	u : 0.04	
a : 0.48	A : 0.42	G : 0.04	C : 0.02	c : 0.02	

#score	618.8979591836741
#seq	49
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_transcript_m3_run2.nuc.txt

#NT
GGAG	chr4:1953731-1954052(+)$1	321	16	20	12.0000
GGAG	chrX:13331171-13331449(+)$1	278	127	131	12.0000
GGAG	chr11:292801-293040(+)$1	239	163	167	12.0000
GGAG	chr11:65211473-65211769(+)$1	296	87	91	12.0000
GGAG	chr7:115850591-115850880(+)$1	289	66	70	12.0000
GGAG	chr2:233697465-233697724(+)$1	259	232	236	12.0000
GGAG	chr1:70716191-70716490(+)$1	299	64	68	12.0000
GGAG	chr22:45719002-45719332(+)$1	330	160	164	12.0000
GGAG	chr1:223940504-223940757(+)$1	253	32	36	12.0000
GGAG	chr1:1192339-1192599(-)$1	260	23	27	12.0000
GGAG	chr20:61908466-61908758(+)$1	292	20	24	12.0000
GGAG	chr3:73114447-73114732(+)$1	285	48	52	12.0000
GGAG	chr1:6845421-6845729(+)$1	308	14	18	12.0000
GGAG	chr16:31199366-31199585(+)$1	219	19	23	12.0000
GGAG	chr7:12395702-12395938(-)$1	236	49	53	12.0000
GGAG	chr1:25572834-25573129(-)$1	295	135	139	12.0000
GGAG	chr2:38975614-38975888(-)$1	274	152	156	12.0000
GGAG	chr16:71823085-71823394(-)$1	309	35	39	12.0000
GGAG	chr16:89964878-89965115(+)$1	237	3	7	12.0000
ggag	chr16:20729282-20729560(+)$1	278	134	138	12.0000
GGAG	chr19:7711944-7712206(+)$1	262	111	115	12.0000
GGAG	chrX:70517170-70517412(+)$1	242	83	87	12.0000
GGAG	chr17:4575292-4575605(-)$1	313	208	212	12.0000
GGAG	chr8:100025039-100025324(-)$1	285	13	17	12.0000
GGAG	chr1:229477910-229478279(-)$1	369	186	190	12.0000
GGAG	chr8:144877110-144877347(-)$1	237	25	29	12.0000
GGAG	chr12:104325209-104325440(+)$1	231	45	49	12.0000
GGAG	chr17:76778156-76778469(-)$1	313	138	142	12.0000
GGAG	chr17:26940474-26940748(-)$1	274	5	9	12.0000
GGAG	chr19:8931755-8932073(-)$1	318	120	124	12.0000
GGAG	chr1:46073602-46073840(+)$1	238	87	91	12.0000
ggag	chr12:69641648-69641932(+)$1	284	100	104	12.0000
GGAG	chr20:61907731-61907994(+)$1	263	41	45	12.0000
GGAG	chr3:14523140-14523366(+)$1	226	126	130	12.0000
GGAG	chr1:161136853-161137142(+)$1	289	47	51	12.0000
GGAG	chr7:12395738-12396021(-)$1	283	132	136	12.0000
GGAG	chr1:19431501-19431770(-)$1	269	29	33	12.0000
GGAG	chr22:50037182-50037518(-)$1	336	80	84	12.0000
GGAG	chr22:24036283-24036587(-)$1	304	56	60	12.0000
GGAG	chr5:39073644-39073940(-)$1	296	51	55	12.0000
GGAG	chr17:37815616-37815918(+)$1	302	96	100	12.0000
GGAG	chr7:142651272-142651556(-)$1	284	46	50	12.0000
GGAG	chr11:62287689-62287955(-)$1	266	65	69	12.0000
GGAG	chr7:116502509-116502845(+)$1	336	5	9	12.0000
GGAG	chr19:10506606-10506874(-)$1	268	12	16	12.0000
GGAG	chr3:182631573-182631879(+)$1	306	132	136	12.0000
GGAG	chr11:65293552-65293806(+)$1	254	227	231	12.0000
GGAG	chr7:120629767-120630022(+)$1	255	179	183	12.0000
GGAG	chr22:49886052-49886342(-)$1	290	76	80	12.0000
GGAG	chr3:152052874-152053154(+)$1	280	124	128	12.0000
GGAG	chr7:142658772-142659049(-)$1	277	157	161	12.0000
GGAG	chr8:11667179-11667440(+)$1	261	134	138	12.0000
GGAG	chr3:128208636-128208966(+)$1	330	24	28	12.0000
GGAG	chr7:155559163-155559478(+)$1	315	83	87	12.0000
GGAG	chr1:70790432-70790697(-)$1	265	117	121	12.0000
GGAG	chr17:26911051-26911324(-)$1	273	153	157	12.0000
GGAG	chr19:53426482-53426773(-)$1	291	70	74	12.0000
GGAG	chr11:65267994-65268202(+)$1	208	12	16	12.0000
ggag	chr14:102974907-102975240(-)$1	333	86	90	12.0000
GGAG	chr14:102493921-102494186(+)$1	265	52	56	12.0000
GGAG	chr13:115015973-115016206(+)$1	233	116	120	12.0000
GGAG	chr19:5696155-5696423(-)$1	268	91	95	12.0000
GGAG	chr17:46051776-46052026(+)$1	250	56	60	12.0000
GGAG	chr12:124093127-124093398(+)$1	271	132	136	12.0000
GGAG	chr19:5705680-5706017(-)$1	337	94	98	12.0000
GGAG	chr21:34915261-34915525(+)$1	264	27	31	12.0000
GGAG	chr17:27001456-27001711(+)$1	255	40	44	12.0000
GGAG	chr4:2597854-2598143(+)$1	289	162	166	12.0000
GGAG	chr19:54621545-54621913(+)$1	368	30	34	12.0000
GGAG	chr15:23308563-23308818(-)$1	255	40	44	12.0000
GGAG	chr19:15510166-15510426(-)$1	260	113	117	12.0000
GGAG	chr12:104327942-104328171(+)$1	229	48	52	12.0000
ggag	chr11:35684841-35685226(+)$1	385	34	38	12.0000
GGAG	chr19:54969502-54969752(+)$1	250	0	4	12.0000
GGAG	chr11:291795-292038(+)$1	243	11	15	12.0000
GGAG	chr20:2635951-2636258(+)$1	307	19	23	12.0000
GGAG	chr16:89972256-89972522(+)$1	266	41	45	12.0000
GGAG	chr5:71491896-71492199(+)$1	303	21	25	12.0000
GGAG	chr20:32245422-32245691(-)$1	269	106	110	12.0000
GGAG	chr5:139885324-139885554(+)$1	230	25	29	12.0000
GGAG	chr11:59578032-59578313(-)$1	281	33	37	12.0000
GGAG	chr15:91448600-91448834(+)$1	234	53	57	12.0000
GGAG	chr17:17739929-17740307(-)$1	378	72	76	12.0000
GGAG	chr15:89444829-89445139(-)$1	310	36	40	12.0000
GGAG	chr1:245009787-245010098(-)$1	311	169	173	12.0000

#otherMatches

#Struct PSSM
a[gg	chr7:150761190-150761464(+)$1	274	1	5	12.0000
bb$$	chr4:1953731-1954052(+)$1	321	16	20	12.0000
]a]f	chrX:13331171-13331449(+)$1	278	127	131	12.0000
ee:e	chr11:292801-293040(+)$1	239	163	167	12.0000
bb22	chr11:65211473-65211769(+)$1	296	87	91	12.0000
ccc]	chr7:115850591-115850880(+)$1	289	66	70	12.0000
eemm	chr2:233697465-233697724(+)$1	259	232	236	12.0000
%%%%	chr1:70716191-70716490(+)$1	299	64	68	12.0000
EEEE	chr22:45719002-45719332(+)$1	330	160	164	12.0000
:ddd	chr1:223940504-223940757(+)$1	253	32	36	12.0000
mmmb	chr1:1192339-1192599(-)$1	260	23	27	12.0000
dddd	chr20:61908466-61908758(+)$1	292	20	24	12.0000
ee""	chr3:73114447-73114732(+)$1	285	48	52	12.0000
mmmb	chr1:6845421-6845729(+)$1	308	14	18	12.0000
iiii	chr16:31199366-31199585(+)$1	219	19	23	12.0000
JJJJ	chr7:12395702-12395938(-)$1	236	49	53	12.0000
]ddd	chr1:25572834-25573129(-)$1	295	135	139	12.0000
addd	chr2:38975614-38975888(-)$1	274	152	156	12.0000
b!!d	chr16:71823085-71823394(-)$1	309	35	39	12.0000
CCCK	chr16:89964878-89965115(+)$1	237	3	7	12.0000
nnnb	chr16:20729282-20729560(+)$1	278	134	138	12.0000
eeee	chr19:7711944-7712206(+)$1	262	111	115	12.0000
bbdd	chrX:70517170-70517412(+)$1	242	83	87	12.0000
22ee	chr17:4575292-4575605(-)$1	313	208	212	12.0000
cccm	chr8:100025039-100025324(-)$1	285	13	17	12.0000
ddcc	chr1:229477910-229478279(-)$1	369	186	190	12.0000
bb[b	chr8:144877110-144877347(-)$1	237	25	29	12.0000
SSSS	chr12:104325209-104325440(+)$1	231	45	49	12.0000
c22d	chr17:76778156-76778469(-)$1	313	138	142	12.0000
BB{E	chr17:26940474-26940748(-)$1	274	5	9	12.0000
DDDD	chr19:8931755-8932073(-)$1	318	120	124	12.0000
dfff	chr1:46073602-46073840(+)$1	238	87	91	12.0000
FFFC	chr12:69641648-69641932(+)$1	284	100	104	12.0000
{AKK	chr20:61907731-61907994(+)$1	263	41	45	12.0000
mmmi	chr3:14523140-14523366(+)$1	226	126	130	12.0000
cccd	chr1:161136853-161137142(+)$1	289	47	51	12.0000
nnnn	chr7:12395738-12396021(-)$1	283	132	136	12.0000
DGGG	chr1:19431501-19431770(-)$1	269	29	33	12.0000
dd::	chr22:50037182-50037518(-)$1	336	80	84	12.0000
mmmm	chr22:24036283-24036587(-)$1	304	56	60	12.0000
gggg	chr5:39073644-39073940(-)$1	296	51	55	12.0000
bbhh	chr17:37815616-37815918(+)$1	302	96	100	12.0000
eeee	chr7:142651272-142651556(-)$1	284	46	50	12.0000
cc::	chr11:62287689-62287955(-)$1	266	65	69	12.0000
FFFF	chr7:116502509-116502845(+)$1	336	5	9	12.0000
nnnb	chr19:10506606-10506874(-)$1	268	12	16	12.0000
bb]h	chr3:182631573-182631879(+)$1	306	132	136	12.0000
c!!d	chr11:65293552-65293806(+)$1	254	227	231	12.0000
gggg	chr7:120629767-120630022(+)$1	255	179	183	12.0000
deee	chr22:49886052-49886342(-)$1	290	76	80	12.0000
9999	chr3:152052874-152053154(+)$1	280	124	128	12.0000
gggg	chr7:142658772-142659049(-)$1	277	157	161	12.0000
e:EE	chr8:11667179-11667440(+)$1	261	134	138	12.0000
GG{B	chr3:128208636-128208966(+)$1	330	24	28	12.0000
cc[b	chr7:155559163-155559478(+)$1	315	83	87	12.0000
qqqq	chr1:70790432-70790697(-)$1	265	117	121	12.0000
emmm	chr17:26911051-26911324(-)$1	273	153	157	12.0000
cc]f	chr19:53426482-53426773(-)$1	291	70	74	12.0000
###e	chr11:65267994-65268202(+)$1	208	12	16	12.0000
ccHH	chr14:102974907-102975240(-)$1	333	86	90	12.0000
gggg	chr14:102493921-102494186(+)$1	265	52	56	12.0000
dd:i	chr13:115015973-115016206(+)$1	233	116	120	12.0000
ee]a	chr19:5696155-5696423(-)$1	268	91	95	12.0000
JJLL	chr17:46051776-46052026(+)$1	250	56	60	12.0000
{CCC	chr12:124093127-124093398(+)$1	271	132	136	12.0000
d]bb	chr19:5705680-5706017(-)$1	337	94	98	12.0000
[bbn	chr21:34915261-34915525(+)$1	264	27	31	12.0000
ee[f	chr17:27001456-27001711(+)$1	255	40	44	12.0000
iiii	chr4:2597854-2598143(+)$1	289	162	166	12.0000
JJJ:	chr19:54621545-54621913(+)$1	368	30	34	12.0000
ee:E	chr15:23308563-23308818(-)$1	255	40	44	12.0000
gg!!	chr19:15510166-15510426(-)$1	260	113	117	12.0000
ee]c	chr12:104327942-104328171(+)$1	229	48	52	12.0000
pppp	chr11:35684841-35685226(+)$1	385	34	38	12.0000
HHHH	chr19:54969502-54969752(+)$1	250	0	4	12.0000
cmmm	chr11:291795-292038(+)$1	243	11	15	12.0000
====	chr20:2635951-2636258(+)$1	307	19	23	12.0000
mmmm	chr16:89972256-89972522(+)$1	266	41	45	12.0000
HHKK	chr5:71491896-71492199(+)$1	303	21	25	12.0000
bb88	chr20:32245422-32245691(-)$1	269	106	110	12.0000
e22f	chr5:139885324-139885554(+)$1	230	25	29	12.0000
hhhh	chr11:59578032-59578313(-)$1	281	33	37	12.0000
:::=	chr15:91448600-91448834(+)$1	234	53	57	12.0000
b!!e	chr17:17739929-17740307(-)$1	378	72	76	12.0000
333b	chr15:89444829-89445139(-)$1	310	36	40	12.0000
b]bb	chr1:245009787-245010098(-)$1	311	169	173	12.0000

#DB
(.((	chr7:150761190-150761464(+)$1	1	1	5	12.0000
((..	chr4:1953731-1954052(+)$1	1	16	20	12.0000
.).)	chrX:13331171-13331449(+)$1	1	127	131	12.0000
)).(	chr11:292801-293040(+)$1	1	163	167	12.0000
))..	chr11:65211473-65211769(+)$1	1	87	91	12.0000
))).	chr7:115850591-115850880(+)$1	1	66	70	12.0000
((..	chr2:233697465-233697724(+)$1	1	232	236	12.0000
....	chr1:70716191-70716490(+)$1	1	64	68	12.0000
((((	chr22:45719002-45719332(+)$1	1	160	164	12.0000
.(((	chr1:223940504-223940757(+)$1	1	32	36	12.0000
...)	chr1:1192339-1192599(-)$1	1	23	27	12.0000
((((	chr20:61908466-61908758(+)$1	1	20	24	12.0000
((..	chr3:73114447-73114732(+)$1	1	48	52	12.0000
...)	chr1:6845421-6845729(+)$1	1	14	18	12.0000
((((	chr16:31199366-31199585(+)$1	1	19	23	12.0000
((((	chr7:12395702-12395938(-)$1	1	49	53	12.0000
.)))	chr1:25572834-25573129(-)$1	1	135	139	12.0000
))))	chr2:38975614-38975888(-)$1	1	152	156	12.0000
(..(	chr16:71823085-71823394(-)$1	1	35	39	12.0000
(((.	chr16:89964878-89965115(+)$1	1	3	7	12.0000
...)	chr16:20729282-20729560(+)$1	1	134	138	12.0000
))))	chr19:7711944-7712206(+)$1	1	111	115	12.0000
))((	chrX:70517170-70517412(+)$1	1	83	87	12.0000
..))	chr17:4575292-4575605(-)$1	1	208	212	12.0000
(((.	chr8:100025039-100025324(-)$1	1	13	17	12.0000
))))	chr1:229477910-229478279(-)$1	1	186	190	12.0000
((.(	chr8:144877110-144877347(-)$1	1	25	29	12.0000
....	chr12:104325209-104325440(+)$1	1	45	49	12.0000
)..)	chr17:76778156-76778469(-)$1	1	138	142	12.0000
((.(	chr17:26940474-26940748(-)$1	1	5	9	12.0000
))))	chr19:8931755-8932073(-)$1	1	120	124	12.0000
))))	chr1:46073602-46073840(+)$1	1	87	91	12.0000
((((	chr12:69641648-69641932(+)$1	1	100	104	12.0000
.(..	chr20:61907731-61907994(+)$1	1	41	45	12.0000
...)	chr3:14523140-14523366(+)$1	1	126	130	12.0000
)))(	chr1:161136853-161137142(+)$1	1	47	51	12.0000
....	chr7:12395738-12396021(-)$1	1	132	136	12.0000
((((	chr1:19431501-19431770(-)$1	1	29	33	12.0000
))..	chr22:50037182-50037518(-)$1	1	80	84	12.0000
....	chr22:24036283-24036587(-)$1	1	56	60	12.0000
))))	chr5:39073644-39073940(-)$1	1	51	55	12.0000
))))	chr17:37815616-37815918(+)$1	1	96	100	12.0000
((((	chr7:142651272-142651556(-)$1	1	46	50	12.0000
))..	chr11:62287689-62287955(-)$1	1	65	69	12.0000
((((	chr7:116502509-116502845(+)$1	1	5	9	12.0000
...)	chr19:10506606-10506874(-)$1	1	12	16	12.0000
)).)	chr3:182631573-182631879(+)$1	1	132	136	12.0000
(..(	chr11:65293552-65293806(+)$1	1	227	231	12.0000
((((	chr7:120629767-120630022(+)$1	1	179	183	12.0000
)(((	chr22:49886052-49886342(-)$1	1	76	80	12.0000
....	chr3:152052874-152053154(+)$1	1	124	128	12.0000
((((	chr7:142658772-142659049(-)$1	1	157	161	12.0000
).))	chr8:11667179-11667440(+)$1	1	134	138	12.0000
((.(	chr3:128208636-128208966(+)$1	1	24	28	12.0000
((.(	chr7:155559163-155559478(+)$1	1	83	87	12.0000
....	chr1:70790432-70790697(-)$1	1	117	121	12.0000
(...	chr17:26911051-26911324(-)$1	1	153	157	12.0000
)).)	chr19:53426482-53426773(-)$1	1	70	74	12.0000
...(	chr11:65267994-65268202(+)$1	1	12	16	12.0000
))))	chr14:102974907-102975240(-)$1	1	86	90	12.0000
))))	chr14:102493921-102494186(+)$1	1	52	56	12.0000
)).(	chr13:115015973-115016206(+)$1	1	116	120	12.0000
)).)	chr19:5696155-5696423(-)$1	1	91	95	12.0000
((..	chr17:46051776-46052026(+)$1	1	56	60	12.0000
.(((	chr12:124093127-124093398(+)$1	1	132	136	12.0000
).))	chr19:5705680-5706017(-)$1	1	94	98	12.0000
.((.	chr21:34915261-34915525(+)$1	1	27	31	12.0000
((.(	chr17:27001456-27001711(+)$1	1	40	44	12.0000
))))	chr4:2597854-2598143(+)$1	1	162	166	12.0000
(((.	chr19:54621545-54621913(+)$1	1	30	34	12.0000
)).(	chr15:23308563-23308818(-)$1	1	40	44	12.0000
((..	chr19:15510166-15510426(-)$1	1	113	117	12.0000
)).)	chr12:104327942-104328171(+)$1	1	48	52	12.0000
....	chr11:35684841-35685226(+)$1	1	34	38	12.0000
((((	chr19:54969502-54969752(+)$1	1	0	4	12.0000
(...	chr11:291795-292038(+)$1	1	11	15	12.0000
((((	chr20:2635951-2636258(+)$1	1	19	23	12.0000
....	chr16:89972256-89972522(+)$1	1	41	45	12.0000
((..	chr5:71491896-71492199(+)$1	1	21	25	12.0000
))..	chr20:32245422-32245691(-)$1	1	106	110	12.0000
)..)	chr5:139885324-139885554(+)$1	1	25	29	12.0000
((((	chr11:59578032-59578313(-)$1	1	33	37	12.0000
...(	chr15:91448600-91448834(+)$1	1	53	57	12.0000
(..(	chr17:17739929-17740307(-)$1	1	72	76	12.0000
...)	chr15:89444829-89445139(-)$1	1	36	40	12.0000
).))	chr1:245009787-245010098(-)$1	1	169	173	12.0000

#PSSM
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_transcript_m2_run1.nuc.txt

#NT
UGACAC	chr11:5289550-5289799(-)$1	249	135	141	9.2121
GGACAA	chr16:227331-227541(+)$1	210	27	33	9.7424
GGAAAC	chr11:67353925-67354207(+)$1	282	112	118	10.0454
GGACUC	chrX:73040703-73041036(-)$1	333	79	85	9.9696
GGAUAC	chr16:2820994-2821290(+)$1	296	131	137	9.7424
GGUCAC	chr14:50052948-50053193(-)$1	245	132	138	9.3636
ggacag	chr7:120887311-120887593(+)$1	282	210	216	10.1212
ggauac	chr7:119432500-119432767(-)$1	267	21	27	9.7424
gaacac	chr7:119537994-119538278(-)$1	284	94	100	8.9848
GGACCC	chr15:79165205-79165490(+)$1	285	168	174	10.1969
GGACAG	chr8:100904038-100904283(-)$1	245	20	26	10.1212
GGACUC	chr16:30081228-30081450(+)$1	222	163	169	9.9696
GUACAC	chr1:39500025-39500278(+)$1	253	94	100	8.9848
GGAAAC	chr8:101715361-101715584(-)$1	223	118	124	10.0454
GGGCAC	chr10:73576107-73576341(-)$1	234	142	148	9.4393
GGAAAC	chr3:197677706-197677937(+)$1	231	51	57	10.0454
ugacac	chr8:91271957-91272193(+)$1	236	106	112	9.2121
GGAUAC	chr8:56986518-56986722(-)$1	204	12	18	9.7424
GUacac	chr19:4036787-4037032(+)$1	245	126	132	8.9848
agacac	chr8:91268914-91269174(+)$1	260	134	140	9.0606
GGAGAC	chr1:8923234-8923464(-)$1	230	116	122	9.7424
GGACAC	chr19:17513668-17513927(-)$1	259	247	253	13.5303
GGACCC	chr5:132202587-132202829(+)$1	242	173	179	10.1969
GGUCAC	chr14:50052902-50053127(-)$1	225	66	72	9.3636
UGACAC	chr11:5289611-5289827(-)$1	216	163	169	9.2121
GGACCC	chr11:5290770-5291006(-)$1	236	120	126	10.1969
GGACUC	chr19:4657706-4657989(-)$1	283	70	76	9.9696
GGACAA	chr16:227306-227531(+)$1	225	52	58	9.7424
GGACAG	chr11:18428636-18428884(+)$1	248	78	84	10.1212
GGACCC	chr15:72491922-72492163(-)$1	241	174	180	10.1969
GGACAG	chr11:75111704-75111944(+)$1	240	136	142	10.1212
GGAAAC	chr21:33040723-33040989(+)$1	266	117	123	10.0454
GGAGAC	chr11:63743619-63743889(+)$1	270	148	154	9.7424
GGAAAC	chr2:217366035-217366277(+)$1	242	5	11	10.0454
CGACAC	chr11:5291016-5291268(-)$1	252	106	112	9.1363
GGAAAC	chr19:40330970-40331256(-)$1	286	154	160	10.0454
GGCCAC	chr19:41271054-41271352(+)$1	298	57	63	9.5151
GGACAC	chr6:31698372-31698599(-)$1	227	56	62	13.5303
GGACCC	chr11:5290691-5290970(-)$1	279	84	90	10.1969
ggacag	chr2:168740640-168740888(-)$1	248	124	130	10.1212
GGGCAC	chr6:33377461-33377722(+)$1	261	132	138	9.4393
GGACAA	chr16:56643216-56643470(+)$1	254	25	31	9.7424
GGACCC	chr12:57031939-57032210(-)$1	271	44	50	10.1969
GAACAC	chr8:11696008-11696249(+)$1	241	101	107	8.9848
GGACAC	chr7:99690351-99690706(-)$1	355	129	135	13.5303
GGACUC	chr15:44063392-44063642(+)$1	250	52	58	9.9696
GGAGAC	chr11:62286000-62286255(-)$1	255	156	162	9.7424
GGCCAC	chr15:44086012-44086258(+)$1	246	140	146	9.5151
GGCCAC	chr19:1599394-1599637(-)$1	243	129	135	9.5151
GGACAU	chr2:44115504-44115799(-)$1	295	227	233	9.6666
GGCCAC	chr6:31802691-31802931(+)$1	240	120	126	9.5151
GGACAU	chr11:60658390-60658661(-)$1	271	133	139	9.6666
GGACAG	chr11:75111676-75111904(+)$1	228	164	170	10.1212
GGGCAC	chr15:78841193-78841430(+)$1	237	118	124	9.4393
GGAAAC	chr11:62284060-62284273(-)$1	213	140	146	10.0454
GGACAG	chr12:56553924-56554200(+)$1	276	151	157	10.1212
ggacac	chr4:770471-770792(-)$1	321	278	284	13.5303
ggacag	chr22:50013865-50014148(-)$1	283	148	154	10.1212
GGACAC	chr10:71151859-71152122(+)$1	263	150	156	13.5303
GGACCC	chr11:5275492-5275739(-)$1	247	15	21	10.1969
GGACGC	chr19:46318625-46318897(-)$1	272	43	49	9.6666
GGACCC	chr16:88709610-88709920(-)$1	310	103	109	10.1969
GGACAC	chr19:1598021-1598316(-)$1	295	61	67	13.5303
CGACAC	chr5:180670753-180671002(-)$1	249	179	185	9.1363
GGACAC	chr12:53693007-53693327(+)$1	320	147	153	13.5303

#otherMatches

#Struct PSSM
pppfff	chr12:56119495-56119741(-)$1	246	172	178	9.9696
ZFFFFF	chr11:5289550-5289799(-)$1	249	135	141	9.2121
cccnnn	chr16:227331-227541(+)$1	210	27	33	9.7424
tttttt	chr11:67353925-67354207(+)$1	282	112	118	10.0454
dmmmmd	chrX:73040703-73041036(-)$1	333	79	85	9.9696
==::::	chr16:2820994-2821290(+)$1	296	131	137	9.7424
]bb555	chr14:50052948-50053193(-)$1	245	132	138	9.3636
eccc]g	chr7:120887311-120887593(+)$1	282	210	216	10.1212
H::ccc	chr7:119432500-119432767(-)$1	267	21	27	9.7424
ee::::	chr7:119537994-119538278(-)$1	284	94	100	8.9848
33dddd	chr15:79165205-79165490(+)$1	285	168	174	10.1969
ee[a[f	chr8:100904038-100904283(-)$1	245	20	26	10.1212
eeeccc	chr16:30081228-30081450(+)$1	222	163	169	9.9696
:::BBK	chr1:39500025-39500278(+)$1	253	94	100	8.9848
dmmmmd	chr8:101715361-101715584(-)$1	223	118	124	10.0454
dddd::	chr10:73576107-73576341(-)$1	234	142	148	9.4393
a[aooo	chr3:197677706-197677937(+)$1	231	51	57	10.0454
eee[cc	chr8:91271957-91272193(+)$1	236	106	112	9.2121
:::::d	chr8:56986518-56986722(-)$1	204	12	18	9.7424
ffssss	chr19:4036787-4037032(+)$1	245	126	132	8.9848
^^^^^^	chr8:91268914-91269174(+)$1	260	134	140	9.0606
oooood	chr1:8923234-8923464(-)$1	230	116	122	9.7424
qqqddd	chr19:17513668-17513927(-)$1	259	247	253	13.5303
eellle	chr5:132202587-132202829(+)$1	242	173	179	10.1969
a]bb22	chr14:50052902-50053127(-)$1	225	66	72	9.3636
ZFFFFF	chr11:5289611-5289827(-)$1	216	163	169	9.2121
bb!!ff	chr11:5290770-5291006(-)$1	236	120	126	10.1969
ffff]a	chr19:4657706-4657989(-)$1	283	70	76	9.9696
cccnnn	chr16:227306-227531(+)$1	225	52	58	9.7424
lllggg	chr11:18428636-18428884(+)$1	248	78	84	10.1212
a4444d	chr15:72491922-72492163(-)$1	241	174	180	10.1969
c22ddd	chr11:75111704-75111944(+)$1	240	136	142	10.1212
EEE:ff	chr21:33040723-33040989(+)$1	266	117	123	10.0454
cqqqqq	chr11:63743619-63743889(+)$1	270	148	154	9.7424
DDLLLB	chr2:217366035-217366277(+)$1	242	5	11	10.0454
b:::::	chr11:5291016-5291268(-)$1	252	106	112	9.1363
::::dd	chr19:40330970-40331256(-)$1	286	154	160	10.0454
cEEEEE	chr19:41271054-41271352(+)$1	298	57	63	9.5151
cc[a[b	chr6:31698372-31698599(-)$1	227	56	62	13.5303
bb!!ff	chr11:5290691-5290970(-)$1	279	84	90	10.1969
eemmmm	chr2:168740640-168740888(-)$1	248	124	130	10.1212
hhhhhh	chr6:33377461-33377722(+)$1	261	132	138	9.4393
a[abb[	chr16:56643216-56643470(+)$1	254	25	31	9.7424
ffffff	chr12:57031939-57032210(-)$1	271	44	50	10.1969
iiiiii	chr8:11696008-11696249(+)$1	241	101	107	8.9848
ggggg:	chr7:99690351-99690706(-)$1	355	129	135	13.5303
b!!fff	chr15:44063392-44063642(+)$1	250	52	58	9.9696
cmmmmc	chr11:62286000-62286255(-)$1	255	156	162	9.7424
hhnnnn	chr15:44086012-44086258(+)$1	246	140	146	9.5151
dddd]c	chr19:1599394-1599637(-)$1	243	129	135	9.5151
:::::i	chr2:44115504-44115799(-)$1	295	227	233	9.6666
[bbooo	chr6:31802691-31802931(+)$1	240	120	126	9.5151
f!!ccc	chr11:60658390-60658661(-)$1	271	133	139	9.6666
c22ddd	chr11:75111676-75111904(+)$1	228	164	170	10.1212
eeee[c	chr15:78841193-78841430(+)$1	237	118	124	9.4393
cc]hhh	chr11:62284060-62284273(-)$1	213	140	146	10.0454
IIIIII	chr12:56553924-56554200(+)$1	276	151	157	10.1212
e55555	chr4:770471-770792(-)$1	321	278	284	13.5303
22bb22	chr22:50013865-50014148(-)$1	283	148	154	10.1212
ffffff	chr10:71151859-71152122(+)$1	263	150	156	13.5303
gg"""g	chr11:5275492-5275739(-)$1	247	15	21	10.1969
a!!ddd	chr19:46318625-46318897(-)$1	272	43	49	9.6666
CCMMMM	chr16:88709610-88709920(-)$1	310	103	109	10.1969
ddd^^^	chr19:1598021-1598316(-)$1	295	61	67	13.5303
eeee::	chr5:180670753-180671002(-)$1	249	179	185	9.1363
gglllg	chr12:53693007-53693327(+)$1	320	147	153	13.5303

#DB
...)))	chr12:56119495-56119741(-)$1	1	172	178	9.9696
.)))))	chr11:5289550-5289799(-)$1	1	135	141	9.2121
(((...	chr16:227331-227541(+)$1	1	27	33	9.7424
......	chr11:67353925-67354207(+)$1	1	112	118	10.0454
(....)	chrX:73040703-73041036(-)$1	1	79	85	9.9696
))....	chr16:2820994-2821290(+)$1	1	131	137	9.7424
.))...	chr14:50052948-50053193(-)$1	1	132	138	9.3636
)))).)	chr7:120887311-120887593(+)$1	1	210	216	10.1212
(..(((	chr7:119432500-119432767(-)$1	1	21	27	9.7424
))....	chr7:119537994-119538278(-)$1	1	94	100	8.9848
..))))	chr15:79165205-79165490(+)$1	1	168	174	10.1969
((.(.(	chr8:100904038-100904283(-)$1	1	20	26	10.1212
((((((	chr16:30081228-30081450(+)$1	1	163	169	9.9696
...((.	chr1:39500025-39500278(+)$1	1	94	100	8.9848
(....)	chr8:101715361-101715584(-)$1	1	118	124	10.0454
))))..	chr10:73576107-73576341(-)$1	1	142	148	9.4393
(.(...	chr3:197677706-197677937(+)$1	1	51	57	10.0454
(((.((	chr8:91271957-91272193(+)$1	1	106	112	9.2121
.....(	chr8:56986518-56986722(-)$1	1	12	18	9.7424
((....	chr19:4036787-4037032(+)$1	1	126	132	8.9848
......	chr8:91268914-91269174(+)$1	1	134	140	9.0606
.....)	chr1:8923234-8923464(-)$1	1	116	122	9.7424
...)))	chr19:17513668-17513927(-)$1	1	247	253	13.5303
((...)	chr5:132202587-132202829(+)$1	1	173	179	10.1969
).))..	chr14:50052902-50053127(-)$1	1	66	72	9.3636
.)))))	chr11:5289611-5289827(-)$1	1	163	169	9.2121
((..((	chr11:5290770-5291006(-)$1	1	120	126	10.1969
)))).)	chr19:4657706-4657989(-)$1	1	70	76	9.9696
(((...	chr16:227306-227531(+)$1	1	52	58	9.7424
...)))	chr11:18428636-18428884(+)$1	1	78	84	10.1212
)....)	chr15:72491922-72492163(-)$1	1	174	180	10.1969
)..)))	chr11:75111704-75111944(+)$1	1	136	142	10.1212
(((.((	chr21:33040723-33040989(+)$1	1	117	123	10.0454
(.....	chr11:63743619-63743889(+)$1	1	148	154	9.7424
((...(	chr2:217366035-217366277(+)$1	1	5	11	10.0454
).....	chr11:5291016-5291268(-)$1	1	106	112	9.1363
....((	chr19:40330970-40331256(-)$1	1	154	160	10.0454
)(((((	chr19:41271054-41271352(+)$1	1	57	63	9.5151
((.(.(	chr6:31698372-31698599(-)$1	1	56	62	13.5303
((..((	chr11:5290691-5290970(-)$1	1	84	90	10.1969
((....	chr2:168740640-168740888(-)$1	1	124	130	10.1212
))))))	chr6:33377461-33377722(+)$1	1	132	138	9.4393
(.(((.	chr16:56643216-56643470(+)$1	1	25	31	9.7424
((((((	chr12:57031939-57032210(-)$1	1	44	50	10.1969
((((((	chr8:11696008-11696249(+)$1	1	101	107	8.9848
))))).	chr7:99690351-99690706(-)$1	1	129	135	13.5303
(..(((	chr15:44063392-44063642(+)$1	1	52	58	9.9696
(....)	chr11:62286000-62286255(-)$1	1	156	162	9.7424
((....	chr15:44086012-44086258(+)$1	1	140	146	9.5151
)))).)	chr19:1599394-1599637(-)$1	1	129	135	9.5151
.....(	chr2:44115504-44115799(-)$1	1	227	233	9.6666
.((...	chr6:31802691-31802931(+)$1	1	120	126	9.5151
(..(((	chr11:60658390-60658661(-)$1	1	133	139	9.6666
)..)))	chr11:75111676-75111904(+)$1	1	164	170	10.1212
((((.(	chr15:78841193-78841430(+)$1	1	118	124	9.4393
)).)))	chr11:62284060-62284273(-)$1	1	140	146	10.0454
))))))	chr12:56553924-56554200(+)$1	1	151	157	10.1212
).....	chr4:770471-770792(-)$1	1	278	284	13.5303
..))..	chr22:50013865-50014148(-)$1	1	148	154	10.1212
))))))	chr10:71151859-71152122(+)$1	1	150	156	13.5303
((...(	chr11:5275492-5275739(-)$1	1	15	21	10.1969
(..(((	chr19:46318625-46318897(-)$1	1	43	49	9.6666
((....	chr16:88709610-88709920(-)$1	1	103	109	10.1969
(((...	chr19:1598021-1598316(-)$1	1	61	67	13.5303
))))..	chr5:180670753-180671002(-)$1	1	179	185	9.1363
((...)	chr12:53693007-53693327(+)$1	1	147	153	13.5303

#PSSM
G : 0.81	g : 0.09	U : 0.03	C : 0.03	u : 0.01	a : 0.01	
G : 0.83	g : 0.10	U : 0.03	a : 0.01	A : 0.01	
A : 0.72	a : 0.13	C : 0.06	G : 0.04	U : 0.03	
C : 0.68	c : 0.12	A : 0.10	G : 0.04	U : 0.03	u : 0.01	
A : 0.65	a : 0.13	C : 0.12	U : 0.07	G : 0.01	
C : 0.71	c : 0.09	G : 0.07	A : 0.04	g : 0.04	U : 0.03	

#score	670.1212121212114
#seq	66
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_transcript_m1_run1.nuc.txt

#NT
GUCU	chr16:70696851-70697158(-)$1	307	103	107	11.9999
GUCU	chr10:102120923-102121126(+)$1	203	63	67	11.9999
GUCU	chr22:39130944-39131162(-)$1	218	57	61	11.9999
GUCU	chrX:128939915-128940200(-)$1	285	85	89	11.9999
GUCU	chr20:43955074-43955321(-)$1	247	155	159	11.9999
GUCU	chr6:34555369-34555675(-)$1	306	16	20	11.9999
GUCU	chr2:20818039-20818312(-)$1	273	153	157	11.9999
GUCU	chr1:230974336-230974593(-)$1	257	186	190	11.9999
GUCU	chr22:30824403-30824810(+)$1	407	319	323	11.9999
GUCU	chr19:10501761-10502038(-)$1	277	91	95	11.9999
GUCU	chr19:4361438-4361717(-)$1	279	177	181	11.9999
GUCU	chr17:78093164-78093428(+)$1	264	151	155	11.9999
GUCU	chr11:74916786-74917034(+)$1	248	36	40	11.9999
GUCU	chr2:8824173-8824459(+)$1	286	27	31	11.9999
GUCU	chr17:79826298-79826577(-)$1	279	31	35	11.9999
GUCU	chr12:46752892-46753131(-)$1	239	9	13	11.9999
GUCU	chr6:37448482-37448735(+)$1	253	229	233	11.9999
GUCU	chr21:45565342-45565648(+)$1	306	87	91	11.9999
GUCU	chr19:17693589-17693842(+)$1	253	121	125	11.9999
GUCU	chr14:23441903-23442155(-)$1	252	132	136	11.9999
GUCU	chr11:61633567-61633787(+)$1	220	138	142	11.9999
GUCU	chr9:136335024-136335289(+)$1	265	24	28	11.9999
GUCU	chr2:219128948-219129231(-)$1	283	34	38	11.9999
GUCU	chr22:42303045-42303339(+)$1	294	281	285	11.9999
GUCU	chr9:134453113-134453372(-)$1	259	193	197	11.9999
GUCU	chr1:201103979-201104319(-)$1	340	77	81	11.9999
GUCU	chr19:811830-812086(+)$1	256	34	38	11.9999
GUCU	chr10:73576243-73576497(-)$1	254	144	148	11.9999
GUCU	chr2:231912159-231912423(+)$1	264	15	19	11.9999
gucu	chr8:11700395-11700657(-)$1	262	177	181	11.9999
GUCU	chr22:38616793-38617107(-)$1	314	55	59	11.9999
GUCU	chr17:1658166-1658392(+)$1	226	132	136	11.9999
GUCU	chr20:25278434-25278694(+)$1	260	220	224	11.9999
GUCU	chr1:156219621-156219878(-)$1	257	168	172	11.9999
GUCU	chr20:36031746-36032081(+)$1	335	91	95	11.9999
GUCU	chr17:46024383-46024642(+)$1	259	100	104	11.9999
GUCU	chr7:2703493-2703766(+)$1	273	202	206	11.9999
GUCU	chr9:33441520-33441842(-)$1	322	41	45	11.9999
GUCU	chr17:57474850-57475152(+)$1	302	193	197	11.9999
GUCU	chr6:44221857-44222145(-)$1	288	10	14	11.9999
GUCU	chr5:1051092-1051372(-)$1	280	3	7	11.9999
GUCU	chrX:128939492-128939717(-)$1	225	141	145	11.9999
GUCU	chr16:89711104-89711406(-)$1	302	46	50	11.9999
GUCU	chr7:935145-935390(+)$1	245	44	48	11.9999
GUCU	chr21:46270387-46270612(-)$1	225	18	22	11.9999
gucu	chr8:11700059-11700289(-)$1	230	122	126	11.9999
GUCU	chr20:62565491-62565748(+)$1	257	34	38	11.9999
GUCU	chr3:50257874-50258134(+)$1	260	134	138	11.9999
GUCU	chr18:2920213-2920482(-)$1	269	185	189	11.9999
GUCU	chr3:196729450-196729705(-)$1	255	148	152	11.9999
gucu	chr17:46025612-46025946(+)$1	334	203	207	11.9999
GUCU	chr3:49571614-49571881(+)$1	267	222	226	11.9999
GUCU	chr20:33590642-33590942(-)$1	300	104	108	11.9999
GUCU	chr20:30252293-30252625(-)$1	332	16	20	11.9999
GUCU	chr17:76203022-76203358(+)$1	336	116	120	11.9999
GUCU	chr3:50257531-50257797(+)$1	266	98	102	11.9999
GUCU	chr10:102122042-102122251(+)$1	209	115	119	11.9999
GUCU	chr3:186793653-186793921(+)$1	268	226	230	11.9999
GUCU	chr19:13054974-13055225(+)$1	251	154	158	11.9999
GUCU	chr19:2430482-2430752(-)$1	270	2	6	11.9999
GUCU	chr19:43012800-43013067(-)$1	267	4	8	11.9999
GUCU	chr20:30823166-30823401(+)$1	235	46	50	11.9999
GUCU	chr7:912898-913164(+)$1	266	29	33	11.9999
GUCU	chr2:120195792-120196057(+)$1	265	43	47	11.9999
GUCU	chr20:3847233-3847545(+)$1	312	148	152	11.9999
GUCU	chrX:118923860-118924076(-)$1	216	74	78	11.9999
GUCU	chr1:55316163-55316406(-)$1	243	139	143	11.9999
GUCU	chr3:48556432-48556852(-)$1	420	137	141	11.9999

#otherMatches

#Struct PSSM
c333	chr1:12034927-12035164(+)$1	237	214	218	11.9999
8888	chr16:70696851-70697158(-)$1	307	103	107	11.9999
FFFF	chr10:102120923-102121126(+)$1	203	63	67	11.9999
[ccc	chr22:39130944-39131162(-)$1	218	57	61	11.9999
FFFF	chrX:128939915-128940200(-)$1	285	85	89	11.9999
aqqq	chr20:43955074-43955321(-)$1	247	155	159	11.9999
====	chr6:34555369-34555675(-)$1	306	16	20	11.9999
????	chr2:20818039-20818312(-)$1	273	153	157	11.9999
22cc	chr1:230974336-230974593(-)$1	257	186	190	11.9999
nnnn	chr22:30824403-30824810(+)$1	407	319	323	11.9999
hhhh	chr19:10501761-10502038(-)$1	277	91	95	11.9999
c[dd	chr19:4361438-4361717(-)$1	279	177	181	11.9999
cfff	chr17:78093164-78093428(+)$1	264	151	155	11.9999
fooo	chr11:74916786-74917034(+)$1	248	36	40	11.9999
dd::	chr2:8824173-8824459(+)$1	286	27	31	11.9999
a[am	chr17:79826298-79826577(-)$1	279	31	35	11.9999
hhhh	chr12:46752892-46753131(-)$1	239	9	13	11.9999
}EEE	chr6:37448482-37448735(+)$1	253	229	233	11.9999
====	chr21:45565342-45565648(+)$1	306	87	91	11.9999
nnnn	chr19:17693589-17693842(+)$1	253	121	125	11.9999
ffff	chr14:23441903-23442155(-)$1	252	132	136	11.9999
eebb	chr11:61633567-61633787(+)$1	220	138	142	11.9999
eeee	chr9:136335024-136335289(+)$1	265	24	28	11.9999
b[ee	chr2:219128948-219129231(-)$1	283	34	38	11.9999
JJJJ	chr22:42303045-42303339(+)$1	294	281	285	11.9999
b:::	chr9:134453113-134453372(-)$1	259	193	197	11.9999
JJJJ	chr1:201103979-201104319(-)$1	340	77	81	11.9999
dddd	chr19:811830-812086(+)$1	256	34	38	11.9999
ccc[	chr10:73576243-73576497(-)$1	254	144	148	11.9999
elll	chr2:231912159-231912423(+)$1	264	15	19	11.9999
ffff	chr8:11700395-11700657(-)$1	262	177	181	11.9999
FFFF	chr22:38616793-38617107(-)$1	314	55	59	11.9999
]ccc	chr17:1658166-1658392(+)$1	226	132	136	11.9999
cc!!	chr20:25278434-25278694(+)$1	260	220	224	11.9999
}DDD	chr1:156219621-156219878(-)$1	257	168	172	11.9999
oooo	chr20:36031746-36032081(+)$1	335	91	95	11.9999
====	chr17:46024383-46024642(+)$1	259	100	104	11.9999
ffoo	chr7:2703493-2703766(+)$1	273	202	206	11.9999
[ccc	chr9:33441520-33441842(-)$1	322	41	45	11.9999
ffff	chr17:57474850-57475152(+)$1	302	193	197	11.9999
DDLL	chr6:44221857-44222145(-)$1	288	10	14	11.9999
gggg	chr5:1051092-1051372(-)$1	280	3	7	11.9999
d:::	chrX:128939492-128939717(-)$1	225	141	145	11.9999
dd>>	chr16:89711104-89711406(-)$1	302	46	50	11.9999
dddd	chr7:935145-935390(+)$1	245	44	48	11.9999
BB{G	chr21:46270387-46270612(-)$1	225	18	22	11.9999
ffff	chr8:11700059-11700289(-)$1	230	122	126	11.9999
gggg	chr20:62565491-62565748(+)$1	257	34	38	11.9999
ccmm	chr3:50257874-50258134(+)$1	260	134	138	11.9999
E:::	chr18:2920213-2920482(-)$1	269	185	189	11.9999
KDDD	chr3:196729450-196729705(-)$1	255	148	152	11.9999
c22b	chr17:46025612-46025946(+)$1	334	203	207	11.9999
hhhh	chr3:49571614-49571881(+)$1	267	222	226	11.9999
mmmm	chr20:33590642-33590942(-)$1	300	104	108	11.9999
BB::	chr20:30252293-30252625(-)$1	332	16	20	11.9999
bboo	chr17:76203022-76203358(+)$1	336	116	120	11.9999
b555	chr3:50257531-50257797(+)$1	266	98	102	11.9999
22a]	chr10:102122042-102122251(+)$1	209	115	119	11.9999
dddd	chr3:186793653-186793921(+)$1	268	226	230	11.9999
nnnn	chr19:13054974-13055225(+)$1	251	154	158	11.9999
EEEK	chr19:2430482-2430752(-)$1	270	2	6	11.9999
BBMM	chr19:43012800-43013067(-)$1	267	4	8	11.9999
eebb	chr20:30823166-30823401(+)$1	235	46	50	11.9999
FFFF	chr7:912898-913164(+)$1	266	29	33	11.9999
ffcc	chr2:120195792-120196057(+)$1	265	43	47	11.9999
gggg	chr20:3847233-3847545(+)$1	312	148	152	11.9999
DDDD	chrX:118923860-118924076(-)$1	216	74	78	11.9999
]eee	chr1:55316163-55316406(-)$1	243	139	143	11.9999
c777	chr3:48556432-48556852(-)$1	420	137	141	11.9999

#DB
)...	chr1:12034927-12035164(+)$1	1	214	218	11.9999
....	chr16:70696851-70697158(-)$1	1	103	107	11.9999
((((	chr10:102120923-102121126(+)$1	1	63	67	11.9999
.(((	chr22:39130944-39131162(-)$1	1	57	61	11.9999
((((	chrX:128939915-128940200(-)$1	1	85	89	11.9999
(...	chr20:43955074-43955321(-)$1	1	155	159	11.9999
((((	chr6:34555369-34555675(-)$1	1	16	20	11.9999
....	chr2:20818039-20818312(-)$1	1	153	157	11.9999
..))	chr1:230974336-230974593(-)$1	1	186	190	11.9999
....	chr22:30824403-30824810(+)$1	1	319	323	11.9999
((((	chr19:10501761-10502038(-)$1	1	91	95	11.9999
(.((	chr19:4361438-4361717(-)$1	1	177	181	11.9999
((((	chr17:78093164-78093428(+)$1	1	151	155	11.9999
(...	chr11:74916786-74917034(+)$1	1	36	40	11.9999
))..	chr2:8824173-8824459(+)$1	1	27	31	11.9999
(.(.	chr17:79826298-79826577(-)$1	1	31	35	11.9999
((((	chr12:46752892-46753131(-)$1	1	9	13	11.9999
.)))	chr6:37448482-37448735(+)$1	1	229	233	11.9999
))))	chr21:45565342-45565648(+)$1	1	87	91	11.9999
....	chr19:17693589-17693842(+)$1	1	121	125	11.9999
((((	chr14:23441903-23442155(-)$1	1	132	136	11.9999
((((	chr11:61633567-61633787(+)$1	1	138	142	11.9999
((((	chr9:136335024-136335289(+)$1	1	24	28	11.9999
(.((	chr2:219128948-219129231(-)$1	1	34	38	11.9999
))))	chr22:42303045-42303339(+)$1	1	281	285	11.9999
)...	chr9:134453113-134453372(-)$1	1	193	197	11.9999
))))	chr1:201103979-201104319(-)$1	1	77	81	11.9999
))))	chr19:811830-812086(+)$1	1	34	38	11.9999
(((.	chr10:73576243-73576497(-)$1	1	144	148	11.9999
(...	chr2:231912159-231912423(+)$1	1	15	19	11.9999
))))	chr8:11700395-11700657(-)$1	1	177	181	11.9999
((((	chr22:38616793-38617107(-)$1	1	55	59	11.9999
.)))	chr17:1658166-1658392(+)$1	1	132	136	11.9999
((..	chr20:25278434-25278694(+)$1	1	220	224	11.9999
.)))	chr1:156219621-156219878(-)$1	1	168	172	11.9999
....	chr20:36031746-36032081(+)$1	1	91	95	11.9999
))))	chr17:46024383-46024642(+)$1	1	100	104	11.9999
((..	chr7:2703493-2703766(+)$1	1	202	206	11.9999
.(((	chr9:33441520-33441842(-)$1	1	41	45	11.9999
((((	chr17:57474850-57475152(+)$1	1	193	197	11.9999
((..	chr6:44221857-44222145(-)$1	1	10	14	11.9999
((((	chr5:1051092-1051372(-)$1	1	3	7	11.9999
)...	chrX:128939492-128939717(-)$1	1	141	145	11.9999
))..	chr16:89711104-89711406(-)$1	1	46	50	11.9999
))))	chr7:935145-935390(+)$1	1	44	48	11.9999
((.(	chr21:46270387-46270612(-)$1	1	18	22	11.9999
))))	chr8:11700059-11700289(-)$1	1	122	126	11.9999
))))	chr20:62565491-62565748(+)$1	1	34	38	11.9999
((..	chr3:50257874-50258134(+)$1	1	134	138	11.9999
)...	chr18:2920213-2920482(-)$1	1	185	189	11.9999
.(((	chr3:196729450-196729705(-)$1	1	148	152	11.9999
)..)	chr17:46025612-46025946(+)$1	1	203	207	11.9999
))))	chr3:49571614-49571881(+)$1	1	222	226	11.9999
....	chr20:33590642-33590942(-)$1	1	104	108	11.9999
((..	chr20:30252293-30252625(-)$1	1	16	20	11.9999
((..	chr17:76203022-76203358(+)$1	1	116	120	11.9999
)...	chr3:50257531-50257797(+)$1	1	98	102	11.9999
..).	chr10:102122042-102122251(+)$1	1	115	119	11.9999
))))	chr3:186793653-186793921(+)$1	1	226	230	11.9999
....	chr19:13054974-13055225(+)$1	1	154	158	11.9999
(((.	chr19:2430482-2430752(-)$1	1	2	6	11.9999
((..	chr19:43012800-43013067(-)$1	1	4	8	11.9999
))))	chr20:30823166-30823401(+)$1	1	46	50	11.9999
((((	chr7:912898-913164(+)$1	1	29	33	11.9999
((((	chr2:120195792-120196057(+)$1	1	43	47	11.9999
((((	chr20:3847233-3847545(+)$1	1	148	152	11.9999
((((	chrX:118923860-118924076(-)$1	1	74	78	11.9999
.)))	chr1:55316163-55316406(-)$1	1	139	143	11.9999
)...	chr3:48556432-48556852(-)$1	1	137	141	11.9999

#PSSM
G : 0.95	g : 0.04	
U : 0.95	u : 0.04	
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	

#score	827.9999999999995
#seq	69
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_CDS_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
&&&&&&ddddllldddd>>>>>>>>>>>hhhhhhhhddddlllddddeeeee"""ffffff"""bbmmmmbb333ffffff333eeeeedddd[a!!dddd"""cccssssssssssccc]dddd22a]dddd:JJJJJJJJJJJDDDD{CCC{DDDD::ccc####eeeee!!ccc[dddd"""bb[ffffffbblllbb]ffffffbb22dddd]ccc22eeeee22ccc::::EEEEEEEEEE:eeeeeammmma]eeeeeccc[bb[eeeeesssssssssseeeee]bb22c	chr9:96009765-96010121(+)$1	356	21	318	891.0000

#DB
......((((...))))...........))))))))((((...))))(((((...((((((...((....))...))))))...)))))((((.(..((((...(((..........))).))))..).)))).)))))))))))((((.(((.((((..(((....(((((..(((.((((...((.((((((((...)).))))))))..)))).)))..)))))..)))....((((((((((.((((((....).)))))(((.((.(((((..........))))).))..)	chr9:96009765-96010121(+)$1	1	21	318	891.0000

#PSSM
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	

#score	891.0
#seq	1
#width	297
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_UTR_m3_run1.nuc.txt

#NT
GAAAA	chr19:5604832-5605047(-)$1	215	14	19	14.9999
gaaaa	chrX:64737775-64738089(-)$1	314	45	50	14.9999
GAAAA	chr16:89351752-89352003(-)$1	251	23	28	14.9999
GAAAA	chr13:107220300-107220558(-)$1	258	150	155	14.9999
GAAAA	chr2:232576552-232576784(+)$1	232	53	58	14.9999
GAAAA	chr16:89349128-89349373(-)$1	245	30	35	14.9999
gaaaa	chr17:48823155-48823386(+)$1	231	3	8	14.9999
gaaaa	chr14:102551119-102551327(-)$1	208	37	42	14.9999
GAAAA	chr7:23561625-23561976(-)$1	351	17	22	14.9999
GAAAA	chr17:48821020-48821243(+)$1	223	68	73	14.9999
GAAAA	chr8:124383048-124383313(-)$1	265	108	113	14.9999
GAAAA	chr1:25568995-25569279(-)$1	284	29	34	14.9999
gaaaa	chr14:102550966-102551189(-)$1	223	34	39	14.9999
GAAAA	chr12:123006588-123006864(-)$1	276	51	56	14.9999
GAAAA	chr19:5626315-5626548(+)$1	233	159	164	14.9999
GAAAA	chr16:89349899-89350184(-)$1	285	7	12	14.9999
GAAAA	chr8:117861102-117861370(-)$1	268	209	214	14.9999
gaaaa	chr3:142772446-142772737(+)$1	291	122	127	14.9999
GAAAA	chr19:55649305-55649543(-)$1	238	160	165	14.9999
GAAAA	chr18:55282948-55283150(-)$1	202	0	5	14.9999
gaaaa	chr17:16029295-16029582(-)$1	287	86	91	14.9999
GAAAA	chr12:122999550-122999830(-)$1	280	75	80	14.9999
gaaaa	chr14:102549340-102549573(-)$1	233	118	123	14.9999
GAAAA	chr11:110106723-110107018(-)$1	295	0	5	14.9999
GAAAA	chr14:73572830-73573092(+)$1	262	54	59	14.9999
GAAAA	chr3:142757642-142757904(+)$1	262	39	44	14.9999
gaaaa	chr5:891652-891958(-)$1	306	129	134	14.9999
GAAAA	chr12:123001715-123001984(-)$1	269	123	128	14.9999
gaaaa	chr14:73577537-73577801(+)$1	264	73	78	14.9999
GAAAA	chr20:16360396-16360699(-)$1	303	81	86	14.9999
GAAAA	chr16:89348884-89349134(-)$1	250	13	18	14.9999
GAAAA	chr1:24972447-24972663(+)$1	216	108	113	14.9999
GAAAA	chr17:48823830-48824053(+)$1	223	116	121	14.9999
GAAAA	chr6:30545771-30546080(+)$1	309	103	108	14.9999
GAAAA	chr2:175213205-175213488(-)$1	283	204	209	14.9999
GAAAA	chr1:90493037-90493344(+)$1	307	214	219	14.9999
GAAAA	chr8:124382080-124382361(-)$1	281	265	270	14.9999
GAAAA	chrX:53439033-53439293(-)$1	260	24	29	14.9999
GAAAA	chr12:56194248-56194514(-)$1	266	152	157	14.9999
GAAAA	chr17:48823898-48824163(+)$1	265	48	53	14.9999
GAAAA	chr7:151864169-151864446(-)$1	277	82	87	14.9999
GAAAA	chr6:32945889-32946185(+)$1	296	75	80	14.9999
GAAAA	chr1:31836834-31837153(+)$1	319	52	57	14.9999
GAAAA	chr11:3026528-3026764(-)$1	236	157	162	14.9999
GAAAA	chr5:71489872-71490115(+)$1	243	178	183	14.9999
GAAAA	chr4:174253051-174253315(-)$1	264	232	237	14.9999
GAAAA	chr3:9477379-9477691(+)$1	312	159	164	14.9999
GAAAA	chr17:16049648-16049963(-)$1	315	148	153	14.9999
GAAAA	chr1:46073885-46074159(+)$1	274	250	255	14.9999
GAAAA	chr16:89349350-89349687(-)$1	337	38	43	14.9999
GAAAA	chr16:89348634-89348913(-)$1	279	140	145	14.9999
GAAAA	chr3:9488831-9489086(+)$1	255	169	174	14.9999
GAAAA	chr15:59185093-59185360(-)$1	267	43	48	14.9999
GAAAA	chr3:50102363-50102659(+)$1	296	106	111	14.9999
GAAAA	chr17:48822987-48823253(+)$1	266	93	98	14.9999
GAAAA	chr1:185275520-185275852(-)$1	332	196	201	14.9999
GAAAA	chr2:232327913-232328126(-)$1	213	125	130	14.9999
GAAAA	chr14:102551189-102551440(-)$1	251	32	37	14.9999
GAAAA	chr13:107220208-107220486(-)$1	278	78	83	14.9999
gaaaa	chr14:102551154-102551364(-)$1	210	74	79	14.9999
gaaaa	chr4:113568256-113568612(+)$1	356	105	110	14.9999
GAAAA	chr14:73576073-73576300(+)$1	227	10	15	14.9999
gaaaa	chr14:102551144-102551354(-)$1	210	64	69	14.9999
GAAAA	chr12:95867841-95868109(+)$1	268	221	226	14.9999
GAAAA	chr16:89351228-89351473(-)$1	245	176	181	14.9999
GAAAA	chr14:73569813-73570142(+)$1	329	26	31	14.9999
GAAAA	chrX:53440150-53440425(-)$1	275	195	200	14.9999
GAAAA	chr8:117861083-117861302(-)$1	219	141	146	14.9999

#otherMatches

#Struct PSSM
=====	chr20:34319846-34320113(-)$1	267	59	64	14.9999
mmmmb	chr19:5604832-5605047(-)$1	215	14	19	14.9999
:::::	chrX:64737775-64738089(-)$1	314	45	50	14.9999
f::::	chr16:89351752-89352003(-)$1	251	23	28	14.9999
c####	chr13:107220300-107220558(-)$1	258	150	155	14.9999
c333c	chr2:232576552-232576784(+)$1	232	53	58	14.9999
fpppp	chr16:89349128-89349373(-)$1	245	30	35	14.9999
:::::	chr17:48823155-48823386(+)$1	231	3	8	14.9999
:::::	chr14:102551119-102551327(-)$1	208	37	42	14.9999
LLLDD	chr7:23561625-23561976(-)$1	351	17	22	14.9999
hhhhc	chr17:48821020-48821243(+)$1	223	68	73	14.9999
+++++	chr8:124383048-124383313(-)$1	265	108	113	14.9999
iiiii	chr1:25568995-25569279(-)$1	284	29	34	14.9999
EE{DD	chr14:102550966-102551189(-)$1	223	34	39	14.9999
ccggg	chr12:123006588-123006864(-)$1	276	51	56	14.9999
###ee	chr19:5626315-5626548(+)$1	233	159	164	14.9999
sssss	chr16:89349899-89350184(-)$1	285	7	12	14.9999
b22gg	chr8:117861102-117861370(-)$1	268	209	214	14.9999
yyyyy	chr3:142772446-142772737(+)$1	291	122	127	14.9999
bb%%%	chr19:55649305-55649543(-)$1	238	160	165	14.9999
:::EE	chr18:55282948-55283150(-)$1	202	0	5	14.9999
^^^^^	chr17:16029295-16029582(-)$1	287	86	91	14.9999
f::::	chr12:122999550-122999830(-)$1	280	75	80	14.9999
:::::	chr14:102549340-102549573(-)$1	233	118	123	14.9999
:::::	chr11:110106723-110107018(-)$1	295	0	5	14.9999
=====	chr14:73572830-73573092(+)$1	262	54	59	14.9999
drrrr	chr3:142757642-142757904(+)$1	262	39	44	14.9999
:::::	chr5:891652-891958(-)$1	306	129	134	14.9999
sssss	chr12:123001715-123001984(-)$1	269	123	128	14.9999
+++++	chr14:73577537-73577801(+)$1	264	73	78	14.9999
J::::	chr20:16360396-16360699(-)$1	303	81	86	14.9999
dqqqq	chr16:89348884-89349134(-)$1	250	13	18	14.9999
qqqqq	chr1:24972447-24972663(+)$1	216	108	113	14.9999
:::::	chr17:48823830-48824053(+)$1	223	116	121	14.9999
nnnnn	chr6:30545771-30546080(+)$1	309	103	108	14.9999
uuuuu	chr2:175213205-175213488(-)$1	283	204	209	14.9999
:::::	chr1:90493037-90493344(+)$1	307	214	219	14.9999
bnnnn	chr8:124382080-124382361(-)$1	281	265	270	14.9999
e!!ee	chrX:53439033-53439293(-)$1	260	24	29	14.9999
:ffff	chr12:56194248-56194514(-)$1	266	152	157	14.9999
:::::	chr17:48823898-48824163(+)$1	265	48	53	14.9999
::GGG	chr7:151864169-151864446(-)$1	277	82	87	14.9999
cc22d	chr6:32945889-32946185(+)$1	296	75	80	14.9999
4eeee	chr1:31836834-31837153(+)$1	319	52	57	14.9999
GG:::	chr11:3026528-3026764(-)$1	236	157	162	14.9999
nnnnn	chr5:71489872-71490115(+)$1	243	178	183	14.9999
eeee:	chr4:174253051-174253315(-)$1	264	232	237	14.9999
ccppp	chr3:9477379-9477691(+)$1	312	159	164	14.9999
cc:::	chr17:16049648-16049963(-)$1	315	148	153	14.9999
9999c	chr1:46073885-46074159(+)$1	274	250	255	14.9999
C::::	chr16:89349350-89349687(-)$1	337	38	43	14.9999
b333b	chr16:89348634-89348913(-)$1	279	140	145	14.9999
G~~~~	chr3:9488831-9489086(+)$1	255	169	174	14.9999
:::::	chr15:59185093-59185360(-)$1	267	43	48	14.9999
FPPPP	chr3:50102363-50102659(+)$1	296	106	111	14.9999
=====	chr17:48822987-48823253(+)$1	266	93	98	14.9999
cc777	chr1:185275520-185275852(-)$1	332	196	201	14.9999
ooooo	chr2:232327913-232328126(-)$1	213	125	130	14.9999
:::::	chr14:102551189-102551440(-)$1	251	32	37	14.9999
G::::	chr13:107220208-107220486(-)$1	278	78	83	14.9999
:::::	chr14:102551154-102551364(-)$1	210	74	79	14.9999
^^^^^	chr4:113568256-113568612(+)$1	356	105	110	14.9999
:::::	chr14:73576073-73576300(+)$1	227	10	15	14.9999
55===	chr14:102551144-102551354(-)$1	210	64	69	14.9999
:::::	chr12:95867841-95868109(+)$1	268	221	226	14.9999
cmmmm	chr16:89351228-89351473(-)$1	245	176	181	14.9999
wwwww	chr14:73569813-73570142(+)$1	329	26	31	14.9999
qqqqq	chrX:53440150-53440425(-)$1	275	195	200	14.9999
b22gg	chr8:117861083-117861302(-)$1	219	141	146	14.9999

#DB
)))))	chr20:34319846-34320113(-)$1	1	59	64	14.9999
....)	chr19:5604832-5605047(-)$1	1	14	19	14.9999
.....	chrX:64737775-64738089(-)$1	1	45	50	14.9999
)....	chr16:89351752-89352003(-)$1	1	23	28	14.9999
(....	chr13:107220300-107220558(-)$1	1	150	155	14.9999
)...)	chr2:232576552-232576784(+)$1	1	53	58	14.9999
(....	chr16:89349128-89349373(-)$1	1	30	35	14.9999
.....	chr17:48823155-48823386(+)$1	1	3	8	14.9999
.....	chr14:102551119-102551327(-)$1	1	37	42	14.9999
...((	chr7:23561625-23561976(-)$1	1	17	22	14.9999
)))))	chr17:48821020-48821243(+)$1	1	68	73	14.9999
.....	chr8:124383048-124383313(-)$1	1	108	113	14.9999
)))))	chr1:25568995-25569279(-)$1	1	29	34	14.9999
((.((	chr14:102550966-102551189(-)$1	1	34	39	14.9999
)))))	chr12:123006588-123006864(-)$1	1	51	56	14.9999
...((	chr19:5626315-5626548(+)$1	1	159	164	14.9999
.....	chr16:89349899-89350184(-)$1	1	7	12	14.9999
)..))	chr8:117861102-117861370(-)$1	1	209	214	14.9999
.....	chr3:142772446-142772737(+)$1	1	122	127	14.9999
((...	chr19:55649305-55649543(-)$1	1	160	165	14.9999
...((	chr18:55282948-55283150(-)$1	1	0	5	14.9999
.....	chr17:16029295-16029582(-)$1	1	86	91	14.9999
)....	chr12:122999550-122999830(-)$1	1	75	80	14.9999
.....	chr14:102549340-102549573(-)$1	1	118	123	14.9999
.....	chr11:110106723-110107018(-)$1	1	0	5	14.9999
)))))	chr14:73572830-73573092(+)$1	1	54	59	14.9999
(....	chr3:142757642-142757904(+)$1	1	39	44	14.9999
.....	chr5:891652-891958(-)$1	1	129	134	14.9999
.....	chr12:123001715-123001984(-)$1	1	123	128	14.9999
.....	chr14:73577537-73577801(+)$1	1	73	78	14.9999
(....	chr20:16360396-16360699(-)$1	1	81	86	14.9999
(....	chr16:89348884-89349134(-)$1	1	13	18	14.9999
.....	chr1:24972447-24972663(+)$1	1	108	113	14.9999
.....	chr17:48823830-48824053(+)$1	1	116	121	14.9999
.....	chr6:30545771-30546080(+)$1	1	103	108	14.9999
.....	chr2:175213205-175213488(-)$1	1	204	209	14.9999
.....	chr1:90493037-90493344(+)$1	1	214	219	14.9999
(....	chr8:124382080-124382361(-)$1	1	265	270	14.9999
(..((	chrX:53439033-53439293(-)$1	1	24	29	14.9999
.((((	chr12:56194248-56194514(-)$1	1	152	157	14.9999
.....	chr17:48823898-48824163(+)$1	1	48	53	14.9999
..(((	chr7:151864169-151864446(-)$1	1	82	87	14.9999
))..)	chr6:32945889-32946185(+)$1	1	75	80	14.9999
.))))	chr1:31836834-31837153(+)$1	1	52	57	14.9999
))...	chr11:3026528-3026764(-)$1	1	157	162	14.9999
.....	chr5:71489872-71490115(+)$1	1	178	183	14.9999
)))).	chr4:174253051-174253315(-)$1	1	232	237	14.9999
((...	chr3:9477379-9477691(+)$1	1	159	164	14.9999
))...	chr17:16049648-16049963(-)$1	1	148	153	14.9999
....)	chr1:46073885-46074159(+)$1	1	250	255	14.9999
(....	chr16:89349350-89349687(-)$1	1	38	43	14.9999
)...)	chr16:89348634-89348913(-)$1	1	140	145	14.9999
)....	chr3:9488831-9489086(+)$1	1	169	174	14.9999
.....	chr15:59185093-59185360(-)$1	1	43	48	14.9999
(....	chr3:50102363-50102659(+)$1	1	106	111	14.9999
)))))	chr17:48822987-48823253(+)$1	1	93	98	14.9999
))...	chr1:185275520-185275852(-)$1	1	196	201	14.9999
.....	chr2:232327913-232328126(-)$1	1	125	130	14.9999
.....	chr14:102551189-102551440(-)$1	1	32	37	14.9999
)....	chr13:107220208-107220486(-)$1	1	78	83	14.9999
.....	chr14:102551154-102551364(-)$1	1	74	79	14.9999
.....	chr4:113568256-113568612(+)$1	1	105	110	14.9999
.....	chr14:73576073-73576300(+)$1	1	10	15	14.9999
..)))	chr14:102551144-102551354(-)$1	1	64	69	14.9999
.....	chr12:95867841-95868109(+)$1	1	221	226	14.9999
(....	chr16:89351228-89351473(-)$1	1	176	181	14.9999
.....	chr14:73569813-73570142(+)$1	1	26	31	14.9999
.....	chrX:53440150-53440425(-)$1	1	195	200	14.9999
)..))	chr8:117861083-117861302(-)$1	1	141	146	14.9999

#PSSM
G : 0.82	g : 0.17	
A : 0.82	a : 0.17	
A : 0.82	a : 0.17	
A : 0.82	a : 0.17	
A : 0.82	a : 0.17	

#score	1034.9999999999998
#seq	69
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_CDS_m3_run1.nuc.txt

#NT
cugc	chr2:70129596-70129938(+)$1	342	3	7	11.9999
cugc	chr17:4859086-4859348(+)$1	262	10	14	11.9999
CUGC	chr15:42523974-42524283(-)$1	309	155	159	11.9999
cugc	chr5:176917489-176917804(-)$1	315	150	154	11.9999
CUGC	chr12:57920418-57920679(+)$1	261	27	31	11.9999
CUGC	chrX:151129623-151129885(-)$1	262	211	215	11.9999
CUGC	chr2:70129274-70129609(+)$1	335	29	33	11.9999
CUGC	chr19:47230726-47231055(-)$1	329	15	19	11.9999
CUGC	chr5:126860328-126860612(+)$1	284	23	27	11.9999
CUGC	chr11:46686264-46686552(+)$1	288	5	9	11.9999
CUGC	chr3:53265383-53265666(-)$1	283	94	98	11.9999
CUGC	chr12:57918220-57918525(+)$1	305	6	10	11.9999
CUGC	chr17:40654629-40654945(+)$1	316	249	253	11.9999
CUGC	chr6:43415198-43415535(+)$1	337	292	296	11.9999
cugc	chr7:116608283-116608561(+)$1	278	223	227	11.9999
CUGC	chr11:85671692-85671980(-)$1	288	34	38	11.9999
CUGC	chr8:62588756-62589014(-)$1	258	92	96	11.9999
CUGC	chr10:102739597-102739845(+)$1	248	31	35	11.9999
CUGC	chr11:9853832-9854151(-)$1	319	247	251	11.9999
cugc	chr14:39564099-39564356(-)$1	257	51	55	11.9999
CUGC	chr14:53348416-53348713(-)$1	297	242	246	11.9999
CUGC	chr7:141464594-141464842(+)$1	248	6	10	11.9999
CUGC	chr6:33286466-33286762(-)$1	296	48	52	11.9999
cugc	chr19:42839801-42840202(+)$1	401	47	51	11.9999
CUGC	chr10:97131063-97131346(-)$1	283	188	192	11.9999
cugc	chr19:42401902-42402248(+)$1	346	40	44	11.9999
CUGC	chr10:114919512-114919785(+)$1	273	137	141	11.9999
CUGC	chr1:109816461-109816799(+)$1	338	145	149	11.9999
CUGC	chr2:231902480-231902752(+)$1	272	172	176	11.9999
CUGC	chr1:10342203-10342486(+)$1	283	9	13	11.9999
CUGC	chr12:120150389-120150672(-)$1	283	9	13	11.9999
CUGC	chr2:130918726-130918985(-)$1	259	96	100	11.9999
cugc	chr16:74339383-74339699(-)$1	316	170	174	11.9999
CUGC	chr15:59191623-59191911(+)$1	288	117	121	11.9999
CUGC	chr17:7369626-7369951(-)$1	325	5	9	11.9999
cugc	chr2:70129459-70129788(+)$1	329	5	9	11.9999
CUGC	chr6:32083629-32083902(-)$1	273	0	4	11.9999
CUGC	chr1:154131417-154131687(-)$1	270	15	19	11.9999
CUGC	chr6:131193568-131193806(-)$1	238	70	74	11.9999
CUGC	chr12:66218898-66219166(+)$1	268	120	124	11.9999
CUGC	chr16:30733712-30734019(+)$1	307	113	117	11.9999
CUGC	chr1:176137759-176138057(-)$1	298	55	59	11.9999
CUGC	chr12:57113947-57114188(-)$1	241	50	54	11.9999
CUGC	chr12:57115111-57115388(-)$1	277	9	13	11.9999
CUGC	chr6:35447705-35447940(-)$1	235	115	119	11.9999
CUGC	chr1:14107346-14107648(+)$1	302	68	72	11.9999
CUGC	chr10:102283748-102284031(-)$1	283	172	176	11.9999
CUGC	chr3:48016819-48017116(-)$1	297	189	193	11.9999
CUGC	chr9:98236313-98236621(-)$1	308	75	79	11.9999
CUGC	chr22:36696151-36696400(-)$1	249	27	31	11.9999
CUGC	chr1:17939366-17939661(+)$1	295	25	29	11.9999
cugc	chr22:37420850-37421162(+)$1	312	242	246	11.9999
CUGC	chr14:23993907-23994185(+)$1	278	1	5	11.9999
CUGC	chr19:54610231-54610505(+)$1	274	211	215	11.9999
CUGC	chr14:63861893-63862195(-)$1	302	232	236	11.9999
CUGC	chr8:30406992-30407253(+)$1	261	18	22	11.9999
CUGC	chr9:115092622-115092948(-)$1	326	13	17	11.9999
CUGC	chr9:13186284-13186541(-)$1	257	150	154	11.9999
CUGC	chr2:74599961-74600266(-)$1	305	98	102	11.9999
CUGC	chr19:10914138-10914417(+)$1	279	49	53	11.9999
CUGC	chr10:60996032-60996387(+)$1	355	313	317	11.9999
CUGC	chr17:79803645-79803855(-)$1	210	9	13	11.9999
CUGC	chr20:401532-401787(+)$1	255	12	16	11.9999
CUGC	chr16:2819099-2819363(+)$1	264	116	120	11.9999
CUGC	chr8:30406948-30407192(+)$1	244	62	66	11.9999
cugc	chr16:30748842-30749115(+)$1	273	8	12	11.9999
CUGC	chr11:637283-637540(+)$1	257	54	58	11.9999
CUGC	chr5:112227542-112227835(-)$1	293	73	77	11.9999
CUGC	chr19:14201097-14201375(-)$1	278	21	25	11.9999
CUGC	chr16:87367459-87367723(-)$1	264	45	49	11.9999
CUGC	chr13:39586883-39587205(-)$1	322	11	15	11.9999
CUGC	chr5:140953330-140953659(-)$1	329	41	45	11.9999
CUGC	chr16:68324133-68324401(+)$1	268	147	151	11.9999

#otherMatches

#Struct PSSM
::::	chrX:76849214-76849509(-)$1	295	43	47	11.9999
::bb	chr2:70129596-70129938(+)$1	342	3	7	11.9999
CCC{	chr17:4859086-4859348(+)$1	262	10	14	11.9999
+fff	chr15:42523974-42524283(-)$1	309	155	159	11.9999
::CC	chr5:176917489-176917804(-)$1	315	150	154	11.9999
====	chr12:57920418-57920679(+)$1	261	27	31	11.9999
@@EE	chrX:151129623-151129885(-)$1	262	211	215	11.9999
)))b	chr2:70129274-70129609(+)$1	335	29	33	11.9999
LLBB	chr19:47230726-47231055(-)$1	329	15	19	11.9999
''ff	chr5:126860328-126860612(+)$1	284	23	27	11.9999
aooo	chr11:46686264-46686552(+)$1	288	5	9	11.9999
33gg	chr3:53265383-53265666(-)$1	283	94	98	11.9999
FFFF	chr12:57918220-57918525(+)$1	305	6	10	11.9999
eeee	chr17:40654629-40654945(+)$1	316	249	253	11.9999
gqqq	chr6:43415198-43415535(+)$1	337	292	296	11.9999
22dd	chr7:116608283-116608561(+)$1	278	223	227	11.9999
EEE:	chr11:85671692-85671980(-)$1	288	34	38	11.9999
ffff	chr8:62588756-62589014(-)$1	258	92	96	11.9999
JJJJ	chr10:102739597-102739845(+)$1	248	31	35	11.9999
nndd	chr11:9853832-9854151(-)$1	319	247	251	11.9999
eeee	chr14:39564099-39564356(-)$1	257	51	55	11.9999
pppp	chr14:53348416-53348713(-)$1	297	242	246	11.9999
DDDD	chr7:141464594-141464842(+)$1	248	6	10	11.9999
aooo	chr6:33286466-33286762(-)$1	296	48	52	11.9999
::::	chr19:42839801-42840202(+)$1	401	47	51	11.9999
eeen	chr10:97131063-97131346(-)$1	283	188	192	11.9999
JJJJ	chr19:42401902-42402248(+)$1	346	40	44	11.9999
rra2	chr10:114919512-114919785(+)$1	273	137	141	11.9999
::::	chr1:109816461-109816799(+)$1	338	145	149	11.9999
gggg	chr2:231902480-231902752(+)$1	272	172	176	11.9999
pppp	chr1:10342203-10342486(+)$1	283	9	13	11.9999
EEEE	chr12:120150389-120150672(-)$1	283	9	13	11.9999
::::	chr2:130918726-130918985(-)$1	259	96	100	11.9999
eeee	chr16:74339383-74339699(-)$1	316	170	174	11.9999
III:	chr15:59191623-59191911(+)$1	288	117	121	11.9999
CCcc	chr17:7369626-7369951(-)$1	325	5	9	11.9999
BMMM	chr2:70129459-70129788(+)$1	329	5	9	11.9999
::::	chr6:32083629-32083902(-)$1	273	0	4	11.9999
HHHH	chr1:154131417-154131687(-)$1	270	15	19	11.9999
!!bb	chr6:131193568-131193806(-)$1	238	70	74	11.9999
eee2	chr12:66218898-66219166(+)$1	268	120	124	11.9999
444f	chr16:30733712-30734019(+)$1	307	113	117	11.9999
::ff	chr1:176137759-176138057(-)$1	298	55	59	11.9999
GGGG	chr12:57113947-57114188(-)$1	241	50	54	11.9999
::BB	chr12:57115111-57115388(-)$1	277	9	13	11.9999
mmcc	chr6:35447705-35447940(-)$1	235	115	119	11.9999
nnnn	chr1:14107346-14107648(+)$1	302	68	72	11.9999
rrdd	chr10:102283748-102284031(-)$1	283	172	176	11.9999
ccc[	chr3:48016819-48017116(-)$1	297	189	193	11.9999
ssse	chr9:98236313-98236621(-)$1	308	75	79	11.9999
QQDD	chr22:36696151-36696400(-)$1	249	27	31	11.9999
e[cc	chr1:17939366-17939661(+)$1	295	25	29	11.9999
gggg	chr22:37420850-37421162(+)$1	312	242	246	11.9999
DDDD	chr14:23993907-23994185(+)$1	278	1	5	11.9999
BBEE	chr19:54610231-54610505(+)$1	274	211	215	11.9999
oocc	chr14:63861893-63862195(-)$1	302	232	236	11.9999
&&dd	chr8:30406992-30407253(+)$1	261	18	22	11.9999
CCCF	chr9:115092622-115092948(-)$1	326	13	17	11.9999
^^ee	chr9:13186284-13186541(-)$1	257	150	154	11.9999
cc]b	chr2:74599961-74600266(-)$1	305	98	102	11.9999
::ee	chr19:10914138-10914417(+)$1	279	49	53	11.9999
eddd	chr10:60996032-60996387(+)$1	355	313	317	11.9999
EEEE	chr17:79803645-79803855(-)$1	210	9	13	11.9999
IIII	chr20:401532-401787(+)$1	255	12	16	11.9999
::::	chr16:2819099-2819363(+)$1	264	116	120	11.9999
^^^^	chr8:30406948-30407192(+)$1	244	62	66	11.9999
PPPP	chr16:30748842-30749115(+)$1	273	8	12	11.9999
eeee	chr11:637283-637540(+)$1	257	54	58	11.9999
nccc	chr5:112227542-112227835(-)$1	293	73	77	11.9999
bb[d	chr19:14201097-14201375(-)$1	278	21	25	11.9999
ffff	chr16:87367459-87367723(-)$1	264	45	49	11.9999
DDD:	chr13:39586883-39587205(-)$1	322	11	15	11.9999
::::	chr5:140953330-140953659(-)$1	329	41	45	11.9999
!bbc	chr16:68324133-68324401(+)$1	268	147	151	11.9999

#DB
....	chrX:76849214-76849509(-)$1	1	43	47	11.9999
..((	chr2:70129596-70129938(+)$1	1	3	7	11.9999
(((.	chr17:4859086-4859348(+)$1	1	10	14	11.9999
.(((	chr15:42523974-42524283(-)$1	1	155	159	11.9999
..((	chr5:176917489-176917804(-)$1	1	150	154	11.9999
))))	chr12:57920418-57920679(+)$1	1	27	31	11.9999
..))	chrX:151129623-151129885(-)$1	1	211	215	11.9999
...(	chr2:70129274-70129609(+)$1	1	29	33	11.9999
..((	chr19:47230726-47231055(-)$1	1	15	19	11.9999
..((	chr5:126860328-126860612(+)$1	1	23	27	11.9999
(...	chr11:46686264-46686552(+)$1	1	5	9	11.9999
..))	chr3:53265383-53265666(-)$1	1	94	98	11.9999
((((	chr12:57918220-57918525(+)$1	1	6	10	11.9999
))))	chr17:40654629-40654945(+)$1	1	249	253	11.9999
(...	chr6:43415198-43415535(+)$1	1	292	296	11.9999
..))	chr7:116608283-116608561(+)$1	1	223	227	11.9999
(((.	chr11:85671692-85671980(-)$1	1	34	38	11.9999
((((	chr8:62588756-62589014(-)$1	1	92	96	11.9999
((((	chr10:102739597-102739845(+)$1	1	31	35	11.9999
..))	chr11:9853832-9854151(-)$1	1	247	251	11.9999
((((	chr14:39564099-39564356(-)$1	1	51	55	11.9999
....	chr14:53348416-53348713(-)$1	1	242	246	11.9999
((((	chr7:141464594-141464842(+)$1	1	6	10	11.9999
(...	chr6:33286466-33286762(-)$1	1	48	52	11.9999
....	chr19:42839801-42840202(+)$1	1	47	51	11.9999
(((.	chr10:97131063-97131346(-)$1	1	188	192	11.9999
((((	chr19:42401902-42402248(+)$1	1	40	44	11.9999
..).	chr10:114919512-114919785(+)$1	1	137	141	11.9999
....	chr1:109816461-109816799(+)$1	1	145	149	11.9999
((((	chr2:231902480-231902752(+)$1	1	172	176	11.9999
....	chr1:10342203-10342486(+)$1	1	9	13	11.9999
((((	chr12:120150389-120150672(-)$1	1	9	13	11.9999
....	chr2:130918726-130918985(-)$1	1	96	100	11.9999
((((	chr16:74339383-74339699(-)$1	1	170	174	11.9999
(((.	chr15:59191623-59191911(+)$1	1	117	121	11.9999
((((	chr17:7369626-7369951(-)$1	1	5	9	11.9999
(...	chr2:70129459-70129788(+)$1	1	5	9	11.9999
....	chr6:32083629-32083902(-)$1	1	0	4	11.9999
((((	chr1:154131417-154131687(-)$1	1	15	19	11.9999
..((	chr6:131193568-131193806(-)$1	1	70	74	11.9999
))).	chr12:66218898-66219166(+)$1	1	120	124	11.9999
...)	chr16:30733712-30734019(+)$1	1	113	117	11.9999
..((	chr1:176137759-176138057(-)$1	1	55	59	11.9999
((((	chr12:57113947-57114188(-)$1	1	50	54	11.9999
..((	chr12:57115111-57115388(-)$1	1	9	13	11.9999
..))	chr6:35447705-35447940(-)$1	1	115	119	11.9999
....	chr1:14107346-14107648(+)$1	1	68	72	11.9999
..))	chr10:102283748-102284031(-)$1	1	172	176	11.9999
(((.	chr3:48016819-48017116(-)$1	1	189	193	11.9999
...)	chr9:98236313-98236621(-)$1	1	75	79	11.9999
..((	chr22:36696151-36696400(-)$1	1	27	31	11.9999
(.((	chr1:17939366-17939661(+)$1	1	25	29	11.9999
))))	chr22:37420850-37421162(+)$1	1	242	246	11.9999
((((	chr14:23993907-23994185(+)$1	1	1	5	11.9999
))))	chr19:54610231-54610505(+)$1	1	211	215	11.9999
..))	chr14:63861893-63862195(-)$1	1	232	236	11.9999
..((	chr8:30406992-30407253(+)$1	1	18	22	11.9999
((((	chr9:115092622-115092948(-)$1	1	13	17	11.9999
..))	chr9:13186284-13186541(-)$1	1	150	154	11.9999
)).)	chr2:74599961-74600266(-)$1	1	98	102	11.9999
..((	chr19:10914138-10914417(+)$1	1	49	53	11.9999
((((	chr10:60996032-60996387(+)$1	1	313	317	11.9999
((((	chr17:79803645-79803855(-)$1	1	9	13	11.9999
((((	chr20:401532-401787(+)$1	1	12	16	11.9999
....	chr16:2819099-2819363(+)$1	1	116	120	11.9999
....	chr8:30406948-30407192(+)$1	1	62	66	11.9999
....	chr16:30748842-30749115(+)$1	1	8	12	11.9999
))))	chr11:637283-637540(+)$1	1	54	58	11.9999
.)))	chr5:112227542-112227835(-)$1	1	73	77	11.9999
((.(	chr19:14201097-14201375(-)$1	1	21	25	11.9999
((((	chr16:87367459-87367723(-)$1	1	45	49	11.9999
(((.	chr13:39586883-39587205(-)$1	1	11	15	11.9999
....	chr5:140953330-140953659(-)$1	1	41	45	11.9999
.(((	chr16:68324133-68324401(+)$1	1	147	151	11.9999

#PSSM
C : 0.85	c : 0.14	
U : 0.85	u : 0.14	
G : 0.85	g : 0.14	
C : 0.85	c : 0.14	

#score	887.9999999999998
#seq	74
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_UTR_m1_run1.nuc.txt

#NT
gggcuggggcggag	chr2:183902919-183903188(-)$1	269	80	94	22.9259
GGGAGGGGGAGGAG	chr17:73775389-73775800(-)$1	411	371	385	23.4814
ggggcggggcgggg	chr1:245026158-245026465(-)$1	307	44	58	25.8888
GGGGUGGGUUGGGG	chr22:20105341-20105596(+)$1	255	91	105	19.6851
gggaagggaagggG	chr6:86352565-86352819(-)$1	254	90	104	19.6851
GGGCGGGGGAGGGG	chr7:5634092-5634354(+)$1	262	68	82	26.5370
GGGGUGGGGCUGGG	chr19:18668655-18668969(+)$1	314	101	115	21.9074
GGGUGCCGGCGGGG	chr2:242255462-242255711(+)$1	249	45	59	20.7037
UGCAGGGGGCGGGG	chr19:18547997-18548296(-)$1	299	109	123	21.8148
GGGAGGGCGCGGGC	chr17:7477067-7477321(+)$1	254	63	77	20.8888
cgggggggucgggg	chr12:7037365-7037609(+)$1	244	29	43	21.1666
GGGAUGGGGUGGGG	chr17:46653875-46654119(-)$1	244	91	105	24.2222
gggagggggcagag	chr15:64752848-64753083(+)$1	235	25	39	22.2777
gggcaggggcgggg	chr11:3013145-3013465(-)$1	320	110	124	26.1666
Gggcggcggcggcg	chr1:150947039-150947330(-)$1	291	55	69	22.0925
cggccggggcgggg	chrX:152953475-152953706(+)$1	231	92	106	21.9999
GGGAGGGGGCGGGG	chr11:64014149-64014454(-)$1	305	112	126	29.8703
GGGGGAGGGAGGGG	chr16:31044940-31045257(+)$1	317	87	101	21.8148
GGGAGGGGGCCGGC	chrX:152954279-152954567(+)$1	288	220	234	21.5370
GGGUGGGGGCGGGU	chr12:109124501-109124760(-)$1	259	33	47	24.3148
ggaaagaggcgggg	chr1:110527543-110527808(+)$1	265	82	96	19.1296
ggaggggggcgcgg	chr22:19418918-19419254(-)$1	336	90	104	20.6111
gggaggggggaggg	chr8:30669838-30670090(-)$1	252	93	107	22.6481
ggcgcggggcgggg	chr7:151216103-151216386(-)$1	283	97	111	22.0925
GGGUGGGGGGAGGG	chr5:177022685-177022937(+)$1	252	41	55	21.4444
GGGCGGGGGCGGGA	chr5:138629681-138629966(+)$1	285	152	166	25.2407
cggagggggcggcg	chr9:126692129-126692438(-)$1	309	9	23	21.9999
ggggggcggugggg	chr8:102217325-102217606(-)$1	281	11	25	22.8333
GGGAGGAGGAGGGA	chr7:77166711-77166970(+)$1	259	7	21	19.2222
GGGCCGGGGUGGGG	chr19:18547577-18547844(-)$1	267	76	90	23.4814
GGGUGGGUGAGGGG	chr7:150779628-150779857(-)$1	229	49	63	21.0740
gggaggggcccggg	chr19:1652281-1652538(-)$1	257	91	105	21.6296
GGGAUGGGGCGGAG	chr19:16187751-16188015(+)$1	264	14	28	23.3888
GGGUGGGGGUGGGG	chr8:87354877-87355141(+)$1	264	60	74	25.9814
GGGGAGCGGCGGGG	chr5:179248031-179248276(+)$1	245	121	135	22.2777
gggcggggacggag	chr2:97535541-97535801(-)$1	260	45	59	21.8148
gggagggggcggag	chr21:46494356-46494613(+)$1	257	107	121	26.3518
GGGCGGAGGCGGGG	chr7:5569495-5569749(-)$1	254	215	229	25.7962
GGGGUGGGUUGGGG	chr22:20105396-20105645(+)$1	249	36	50	19.6851
UGCAGGGGGCGGGG	chr19:18547932-18548197(-)$1	265	10	24	21.8148
GGGCUUgggcgggg	chr8:30669986-30670267(-)$1	281	148	162	22.0925
GGGCGGAGGCGGGG	chr7:5569348-5569622(-)$1	274	88	102	25.7962
gggcgggggcgcgg	chr22:20067992-20068268(+)$1	276	22	36	24.7777
ggcggggggcgggg	chr19:34287171-34287445(+)$1	274	1	15	25.3333
GGGAGGCGGUGGCG	chr1:26232172-26232446(-)$1	274	122	136	19.8703
GGGGGUGGGCGGGA	chr17:76122890-76123140(-)$1	250	31	45	20.6111
gggagggggugggg	chr2:54197784-54198040(-)$1	256	88	102	27.1851
gggagcgggcggcg	chr1:1822248-1822535(-)$1	287	86	100	21.8148
GGACGGGGUCGGGG	chr19:10829098-10829349(+)$1	251	103	117	21.7222
GGUUGGGGGCGGGG	chr19:2270097-2270395(+)$1	298	123	137	24.6851
AGGAGGGGUGGGGG	chr1:153918927-153919200(-)$1	273	40	54	18.5740
GGUUGGGGGCGGGG	chr19:2270202-2270434(+)$1	232	18	32	24.6851
GGGCGGGGGCCGGG	chr19:41770609-41770858(+)$1	249	107	121	25.3333

#otherMatches

#Struct PSSM
iiiii!!ccclllc	chr7:5569455-5569695(-)$1	240	161	175	25.7962
e::dddd[bbnnnn	chr2:183902919-183903188(-)$1	269	80	94	22.9259
===========BB}	chr17:73775389-73775800(-)$1	411	371	385	23.4814
ffff[dddd[gggg	chr1:245026158-245026465(-)$1	307	44	58	25.8888
mmccc:eeeeennn	chr22:20105341-20105596(+)$1	255	91	105	19.6851
::::::::::::::	chr6:86352565-86352819(-)$1	254	90	104	19.6851
============bb	chr7:5634092-5634354(+)$1	262	68	82	26.5370
eeeee[a[ccc"""	chr19:18668655-18668969(+)$1	314	101	115	21.9074
ddd[ccc[dddd""	chr2:242255462-242255711(+)$1	249	45	59	20.7037
EEE?????BBdddd	chr19:18547997-18548296(-)$1	299	109	123	21.8148
ffffff]iiiiiii	chr17:7477067-7477321(+)$1	254	63	77	20.8888
d$$$$$dddd!!bb	chr12:7037365-7037609(+)$1	244	29	43	21.1666
ddd]gggggggeee	chr17:46653875-46654119(-)$1	244	91	105	24.2222
bb$$$$$cccnnnn	chr15:64752848-64753083(+)$1	235	25	39	22.2777
""bbmmmmbb333e	chr11:3013145-3013465(-)$1	320	110	124	26.1666
FFFFF{CCCCCC{C	chr1:150947039-150947330(-)$1	291	55	69	22.0925
ffff]bbEEEEEBB	chrX:152953475-152953706(+)$1	231	92	106	21.9999
CCC{BB{GGGGGGG	chr11:64014149-64014454(-)$1	305	112	126	29.8703
bb[bb"""ccc$$$	chr16:31044940-31045257(+)$1	317	87	101	21.8148
hhh:JJJJJJJJJJ	chrX:152954279-152954567(+)$1	288	220	234	21.5370
ffff!!ffffffbb	chr12:109124501-109124760(-)$1	259	33	47	24.3148
GG:::::eeeee[d	chr1:110527543-110527808(+)$1	265	82	96	19.1296
{DDDD{FFFFFF{A	chr22:19418918-19419254(-)$1	336	90	104	20.6111
5555==========	chr8:30669838-30670090(-)$1	252	93	107	22.6481
cccFFFFFF{EEEE	chr7:151216103-151216386(-)$1	283	97	111	22.0925
EEEEggggggg[dd	chr5:177022685-177022937(+)$1	252	41	55	21.4444
]ccc]a]aeeeee[	chr5:138629681-138629966(+)$1	285	152	166	25.2407
b[a[bb[a[iiiii	chr9:126692129-126692438(-)$1	309	9	23	21.9999
ooobb]dddd::FF	chr8:102217325-102217606(-)$1	281	11	25	22.8333
xxxxxxxxxxxxxx	chr7:77166711-77166970(+)$1	259	7	21	19.2222
bggggggg!!a[ii	chr19:18547577-18547844(-)$1	267	76	90	23.4814
ooooeeeee::a[d	chr7:150779628-150779857(-)$1	229	49	63	21.0740
EEE{DDDDgggggg	chr19:1652281-1652538(-)$1	257	91	105	21.6296
:CCC{FFFFFFEEE	chr19:16187751-16188015(+)$1	264	14	28	23.3888
B{DDDD{EEEEE{B	chr8:87354877-87355141(+)$1	264	60	74	25.9814
JJJJJJJJJJIIII	chr5:179248031-179248276(+)$1	245	121	135	22.2777
EEEEJJJJJJJJJJ	chr2:97535541-97535801(-)$1	260	45	59	21.8148
ii22bb]dddd]cc	chr21:46494356-46494613(+)$1	257	107	121	26.3518
iiiii!!ccclllc	chr7:5569495-5569749(-)$1	254	215	229	25.7962
mmccc:eeeeennn	chr22:20105396-20105645(+)$1	249	36	50	19.6851
c[bb[dddd####e	chr19:18547932-18548197(-)$1	265	10	24	21.8148
qddddffffff]a2	chr8:30669986-30670267(-)$1	281	148	162	22.0925
DDDDFFFFFF{HHH	chr7:5569348-5569622(-)$1	274	88	102	25.7962
GGGGGGG{BB::::	chr22:20067992-20068268(+)$1	276	22	36	24.7777
DDD::EEEEEMMMM	chr19:34287171-34287445(+)$1	274	1	15	25.3333
dd!!cccqqqqqqq	chr1:26232172-26232446(-)$1	274	122	136	19.8703
hhhhbb!!dddd!!	chr17:76122890-76123140(-)$1	250	31	45	20.6111
cc"""ccc[a[eee	chr2:54197784-54198040(-)$1	256	88	102	27.1851
eee:ccca[ggggg	chr1:1822248-1822535(-)$1	287	86	100	21.8148
DDhhhhhhhh[ann	chr19:10829098-10829349(+)$1	251	103	117	21.7222
]dddd:a!!bb[bb	chr19:2270097-2270395(+)$1	298	123	137	24.6851
JLLLFFFFFFEEEE	chr1:153918927-153919200(-)$1	273	40	54	18.5740
QQQEEEEEHHHHHH	chr19:2270202-2270434(+)$1	232	18	32	24.6851
A}DDDDZZZBB~~~	chr19:41770609-41770858(+)$1	249	107	121	25.3333

#DB
(((((..(((...)	chr7:5569455-5569695(-)$1	1	161	175	25.7962
)..((((.((....	chr2:183902919-183903188(-)$1	1	80	94	22.9259
))))))))))))).	chr17:73775389-73775800(-)$1	1	371	385	23.4814
((((.((((.((((	chr1:245026158-245026465(-)$1	1	44	58	25.8888
..))).(((((...	chr22:20105341-20105596(+)$1	1	91	105	19.6851
..............	chr6:86352565-86352819(-)$1	1	90	104	19.6851
))))))))))))((	chr7:5634092-5634354(+)$1	1	68	82	26.5370
(((((.(.(((...	chr19:18668655-18668969(+)$1	1	101	115	21.9074
(((.(((.((((..	chr2:242255462-242255711(+)$1	1	45	59	20.7037
))).....))((((	chr19:18547997-18548296(-)$1	1	109	123	21.8148
)))))).)))))))	chr17:7477067-7477321(+)$1	1	63	77	20.8888
(.....((((..((	chr12:7037365-7037609(+)$1	1	29	43	21.1666
))).))))))))))	chr17:46653875-46654119(-)$1	1	91	105	24.2222
((.....(((....	chr15:64752848-64753083(+)$1	1	25	39	22.2777
..((....))...)	chr11:3013145-3013465(-)$1	1	110	124	26.1666
(((((.((((((.(	chr1:150947039-150947330(-)$1	1	55	69	22.0925
)))).)))))))))	chrX:152953475-152953706(+)$1	1	92	106	21.9999
(((.((.(((((((	chr11:64014149-64014454(-)$1	1	112	126	29.8703
((.((...(((...	chr16:31044940-31045257(+)$1	1	87	101	21.8148
))).))))))))))	chrX:152954279-152954567(+)$1	1	220	234	21.5370
((((..((((((((	chr12:109124501-109124760(-)$1	1	33	47	24.3148
((.....(((((.(	chr1:110527543-110527808(+)$1	1	82	96	19.1296
.((((.((((((.(	chr22:19418918-19419254(-)$1	1	90	104	20.6111
....))))))))))	chr8:30669838-30670090(-)$1	1	93	107	22.6481
)))((((((.((((	chr7:151216103-151216386(-)$1	1	97	111	22.0925
(((((((((((.((	chr5:177022685-177022937(+)$1	1	41	55	21.4444
.))).).)(((((.	chr5:138629681-138629966(+)$1	1	152	166	25.2407
(.(.((.(.(((((	chr9:126692129-126692438(-)$1	1	9	23	21.9999
...)).))))..((	chr8:102217325-102217606(-)$1	1	11	25	22.8333
..............	chr7:77166711-77166970(+)$1	1	7	21	19.2222
)(((((((..(.((	chr19:18547577-18547844(-)$1	1	76	90	23.4814
....)))))..(.(	chr7:150779628-150779857(-)$1	1	49	63	21.0740
(((.((((((((((	chr19:1652281-1652538(-)$1	1	91	105	21.6296
.(((.(((((((((	chr19:16187751-16188015(+)$1	1	14	28	23.3888
(.((((.(((((.(	chr8:87354877-87355141(+)$1	1	60	74	25.9814
((((((((((((((	chr5:179248031-179248276(+)$1	1	121	135	22.2777
((((((((((((((	chr2:97535541-97535801(-)$1	1	45	59	21.8148
))..)).)))).))	chr21:46494356-46494613(+)$1	1	107	121	26.3518
(((((..(((...)	chr7:5569495-5569749(-)$1	1	215	229	25.7962
..))).(((((...	chr22:20105396-20105645(+)$1	1	36	50	19.6851
(.((.((((....(	chr19:18547932-18548197(-)$1	1	10	24	21.8148
.)))))))))).).	chr8:30669986-30670267(-)$1	1	148	162	22.0925
((((((((((.(((	chr7:5569348-5569622(-)$1	1	88	102	25.7962
(((((((.((....	chr22:20067992-20068268(+)$1	1	22	36	24.7777
(((..(((((....	chr19:34287171-34287445(+)$1	1	1	15	25.3333
((..(((.......	chr1:26232172-26232446(-)$1	1	122	136	19.8703
((((((..((((..	chr17:76122890-76123140(-)$1	1	31	45	20.6111
((...(((.(.(((	chr2:54197784-54198040(-)$1	1	88	102	27.1851
))).((((.(((((	chr1:1822248-1822535(-)$1	1	86	100	21.8148
((((((((((.(..	chr19:10829098-10829349(+)$1	1	103	117	21.7222
.)))).(..((.((	chr19:2270097-2270395(+)$1	1	123	137	24.6851
(...((((((((((	chr1:153918927-153919200(-)$1	1	40	54	18.5740
...(((((((((((	chr19:2270202-2270434(+)$1	1	18	32	24.6851
).))))...))...	chr19:41770609-41770858(+)$1	1	107	121	25.3333

#PSSM
G : 0.57	g : 0.31	c : 0.05	U : 0.03	A : 0.01	
G : 0.61	g : 0.38	
G : 0.51	g : 0.31	C : 0.03	a : 0.03	c : 0.03	U : 0.03	A : 0.01	
A : 0.20	C : 0.16	a : 0.16	U : 0.12	c : 0.11	g : 0.11	G : 0.11	
G : 0.46	g : 0.25	U : 0.11	c : 0.05	a : 0.05	u : 0.01	C : 0.01	A : 0.01	
G : 0.53	g : 0.37	U : 0.03	C : 0.01	A : 0.01	c : 0.01	
G : 0.46	g : 0.35	A : 0.07	C : 0.05	c : 0.03	a : 0.01	
G : 0.55	g : 0.40	C : 0.01	U : 0.01	
G : 0.51	g : 0.33	U : 0.07	a : 0.03	u : 0.01	c : 0.01	
C : 0.35	c : 0.33	U : 0.11	A : 0.09	G : 0.03	u : 0.03	a : 0.01	g : 0.01	
G : 0.51	g : 0.35	a : 0.03	C : 0.03	U : 0.01	A : 0.01	c : 0.01	
G : 0.59	g : 0.37	c : 0.03	
G : 0.53	g : 0.27	a : 0.07	c : 0.05	A : 0.03	C : 0.01	
G : 0.49	g : 0.38	A : 0.05	C : 0.03	U : 0.01	

#score	1235.7777777777776
#seq	54
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_transcript_m2_run1.nuc.txt

#NT
UUUCUUCCUUUCUUUCCUUCU	chr6:30703886-30704173(-)$1	287	93	114	37.3333
uuucuuucuuccuuucCCuuu	chr2:69643021-69643326(-)$1	305	191	212	31.0000
uuuuucuguuucucuccuugu	chr17:27429449-27429701(-)$1	252	86	107	27.5555
UCUCUCUGuuucuuuccuuuu	chr14:69605731-69605990(-)$1	259	100	121	33.3333
UCUCUCACUUGCUUUCUUUCU	chr19:44055870-44056166(-)$1	296	105	126	29.2222
UUUCUGACUUCAUUUACUUCU	chr12:28469657-28469908(+)$1	251	74	95	23.1111
CCCCUUUCUUUCUUUCUCUCU	chr16:69731892-69732167(+)$1	275	130	151	27.2222
UCUCUUCUUUCCUUUCUUUCU	chr1:40331372-40331616(-)$1	244	82	103	28.5555
ucuuucucucucuuucucuuu	chr6:37864291-37864606(+)$1	315	57	78	25.7777
ccuuuuccuuucucucuuucu	chr6:89079630-89079913(-)$1	283	110	131	25.7777
uuucuuucuuucuuuuuuuuu	chr3:33706545-33706874(-)$1	329	255	276	35.1111
uuucucucucucucucuuucu	chr4:32077269-32077629(+)$1	360	234	255	32.5555
cuucuuucuuuuuuucucucc	chr13:60589574-60589833(-)$1	259	56	77	24.5555
acucugucugucuugccuucu	chr19:50818278-50818579(-)$1	301	164	185	24.8888
uucauuccuuuccuuucuucu	chr21:16124001-16124237(-)$1	236	130	151	24.2222
UCUCUUUUUUUCUUUCUUCUU	chr2:12607471-12607729(+)$1	258	117	138	30.1111
uuucucuuuuccuuucuuccu	chr1:61776287-61776598(+)$1	311	85	106	28.1111
cuucuuuccuuccuuccuucu	chr19:41877173-41877419(+)$1	246	97	118	29.1111
ucucucucuuucuuucuuuuu	chr3:169828908-169829175(-)$1	267	0	21	35.0000
uucuuuucucucuuuccuccu	chr21:30798879-30799181(+)$1	302	115	136	27.7777
uuucuuucuuucuuuccuucu	chr2:168791809-168792014(-)$1	205	1	22	40.6666
UGUCUCUUUUUCUCUCUUUCC	chr19:49141865-49142129(-)$1	264	110	131	27.0000
ucucugucuuugucuucuacu	chr11:14796294-14796570(+)$1	276	107	128	24.7777
uuucuuuguuucuuuucuauu	chr18:12606236-12606502(-)$1	266	89	110	29.5555
guccucuccuuuuuuccuucu	chr11:34964248-34964537(+)$1	289	111	132	23.6666
Uuuccuuccuuccuuccuuca	chr3:194138541-194138806(-)$1	265	15	36	24.3333
ucucuuucuuuuuuuucucuu	chr11:85699492-85699755(-)$1	263	17	38	28.3333
ucucuuuuuuucuuuccuccu	chr11:75830214-75830532(+)$1	318	156	177	33.6666
UGUCUUUGUUUUAUUUCUUCU	chrX:136067270-136067559(+)$1	289	190	211	25.5555
UUCCUUUUAGUCUUUCUUUCU	chr8:42361793-42362081(-)$1	288	85	106	25.1111
uuuuucuuuuucuuuucaucc	chr8:109233184-109233401(-)$1	217	90	111	24.3333
uuucuuucuuuccuuccuuuc	chr14:37794588-37794952(+)$1	364	123	144	31.2222
ucuuuucuuuucuuuucuuuu	chr1:51973712-51973956(-)$1	244	55	76	26.7777
UGUCUCUCUUUCGCUUCUUCU	chr6:20668159-20668441(+)$1	282	100	121	28.4444
Uuuuuuccuuucuuucauuuu	chr16:50253571-50253893(+)$1	322	158	179	29.3333
UCUUCUUCUGUCUUUCCUUCU	chr5:53545065-53545396(-)$1	331	122	143	29.0000
uuucuuuccuuccuuccuucu	chr19:48245380-48245658(+)$1	278	80	101	33.0000
ucucucucuuucuguucuucc	chr7:135834992-135835264(+)$1	272	87	108	29.3333
UUUCUCUCUCACUUUUCUCCC	chr14:23536055-23536329(-)$1	274	213	234	23.3333
UUUCUUUGUCUCUUUCUUUCU	chrX:73047595-73047827(-)$1	232	14	35	33.4444
ucucuugcucugucuccuuuu	chrX:110948998-110949259(+)$1	261	35	56	24.1111
UAAUUUUCUUUCUUUUCCUCU	chr5:53334958-53335242(-)$1	284	91	112	25.5555
UUUGUGucuuucucucccucu	chr16:12460462-12460791(+)$1	329	166	187	28.3333
uuucucucucucucucuuucu	chr7:129490574-129490844(-)$1	270	164	185	32.5555

#otherMatches

#Struct PSSM
DD:::::::::::::::::cc	chr19:48233053-48233330(+)$1	277	13	34	28.3333
:::::::::::::::::::::	chr6:30703886-30704173(-)$1	287	93	114	37.3333
ii^^^^^^^^^^^^^^^^^^^	chr2:69643021-69643326(-)$1	305	191	212	31.0000
:::::::::::::::::::::	chr17:27429449-27429701(-)$1	252	86	107	27.5555
++bb[gggggggttttttttt	chr14:69605731-69605990(-)$1	259	100	121	33.3333
:::::::::cccvvvvvvvvv	chr19:44055870-44056166(-)$1	296	105	126	29.2222
^^^^^^^^^^^^^^^^^^^^^	chr12:28469657-28469908(+)$1	251	74	95	23.1111
::ffffff!!bbttttttttt	chr16:69731892-69732167(+)$1	275	130	151	27.2222
:::::::::::::::::::::	chr1:40331372-40331616(-)$1	244	82	103	28.5555
:::::::::::::::::::::	chr6:37864291-37864606(+)$1	315	57	78	25.7777
:::::dddd^^^^^^^^^^^^	chr6:89079630-89079913(-)$1	283	110	131	25.7777
dddd:::::::::::::::::	chr3:33706545-33706874(-)$1	329	255	276	35.1111
@@@@@@@@@@@@@@@@@@@@@	chr4:32077269-32077629(+)$1	360	234	255	32.5555
:::::::::::::::::::::	chr13:60589574-60589833(-)$1	259	56	77	24.5555
ccpppppppccc22bb:::::	chr19:50818278-50818579(-)$1	301	164	185	24.8888
:::::::::::::::::::::	chr21:16124001-16124237(-)$1	236	130	151	24.2222
::::::::::===========	chr2:12607471-12607729(+)$1	258	117	138	30.1111
:::::::::::::::::::::	chr1:61776287-61776598(+)$1	311	85	106	28.1111
:::::::::::::::::::::	chr19:41877173-41877419(+)$1	246	97	118	29.1111
:::::::::::::::::::::	chr3:169828908-169829175(-)$1	267	0	21	35.0000
^^^^^^^^^^^^^^^eeeee]	chr21:30798879-30799181(+)$1	302	115	136	27.7777
:::::::::::::::::::::	chr2:168791809-168792014(-)$1	205	1	22	40.6666
eee++++++++++++++++++	chr19:49141865-49142129(-)$1	264	110	131	27.0000
::::::::::EEEEE::::::	chr11:14796294-14796570(+)$1	276	107	128	24.7777
666==========333bb]cc	chr18:12606236-12606502(-)$1	266	89	110	29.5555
:::::::::::::::::::::	chr11:34964248-34964537(+)$1	289	111	132	23.6666
:::::::::::::::::::::	chr3:194138541-194138806(-)$1	265	15	36	24.3333
:::::::::::::::::::::	chr11:85699492-85699755(-)$1	263	17	38	28.3333
:::::::::::::::::::::	chr11:75830214-75830532(+)$1	318	156	177	33.6666
eeeee]bb::::iiiiiiiii	chrX:136067270-136067559(+)$1	289	190	211	25.5555
CSSSSSSSSSSHHHHHHHH{B	chr8:42361793-42362081(-)$1	288	85	106	25.1111
^^^^^^^^^^^^^^^^^^^^^	chr8:109233184-109233401(-)$1	217	90	111	24.3333
:::::::::::::::::::::	chr14:37794588-37794952(+)$1	364	123	144	31.2222
:::::::::::::::::::::	chr1:51973712-51973956(-)$1	244	55	76	26.7777
GGG::::::::ccc^^^^^^^	chr6:20668159-20668441(+)$1	282	100	121	28.4444
:::::::::::::::::::::	chr16:50253571-50253893(+)$1	322	158	179	29.3333
::::::::::::::CCCKKBB	chr5:53545065-53545396(-)$1	331	122	143	29.0000
:::::::::::::::::::::	chr19:48245380-48245658(+)$1	278	80	101	33.0000
DDDD:::::::::::::::::	chr7:135834992-135835264(+)$1	272	87	108	29.3333
eeeeCCC}JJJJJJJJJJIII	chr14:23536055-23536329(-)$1	274	213	234	23.3333
:::::::::::::::::::::	chrX:73047595-73047827(-)$1	232	14	35	33.4444
VVVVVCCCLLLDDDDNNNNNB	chrX:110948998-110949259(+)$1	261	35	56	24.1111
::::::BB}EEEEE|||||||	chr5:53334958-53335242(-)$1	284	91	112	25.5555
:::DDDDYYDDDDZZZBBZZZ	chr16:12460462-12460791(+)$1	329	166	187	28.3333
:::::::::::::::::::::	chr7:129490574-129490844(-)$1	270	164	185	32.5555

#DB
((.................((	chr19:48233053-48233330(+)$1	1	13	34	28.3333
.....................	chr6:30703886-30704173(-)$1	1	93	114	37.3333
((...................	chr2:69643021-69643326(-)$1	1	191	212	31.0000
.....................	chr17:27429449-27429701(-)$1	1	86	107	27.5555
..((.(((((((.........	chr14:69605731-69605990(-)$1	1	100	121	33.3333
.........(((.........	chr19:44055870-44056166(-)$1	1	105	126	29.2222
.....................	chr12:28469657-28469908(+)$1	1	74	95	23.1111
..((((((..((.........	chr16:69731892-69732167(+)$1	1	130	151	27.2222
.....................	chr1:40331372-40331616(-)$1	1	82	103	28.5555
.....................	chr6:37864291-37864606(+)$1	1	57	78	25.7777
.....((((............	chr6:89079630-89079913(-)$1	1	110	131	25.7777
)))).................	chr3:33706545-33706874(-)$1	1	255	276	35.1111
.....................	chr4:32077269-32077629(+)$1	1	234	255	32.5555
.....................	chr13:60589574-60589833(-)$1	1	56	77	24.5555
((.......)))..)).....	chr19:50818278-50818579(-)$1	1	164	185	24.8888
.....................	chr21:16124001-16124237(-)$1	1	130	151	24.2222
..........(((((((((((	chr2:12607471-12607729(+)$1	1	117	138	30.1111
.....................	chr1:61776287-61776598(+)$1	1	85	106	28.1111
.....................	chr19:41877173-41877419(+)$1	1	97	118	29.1111
.....................	chr3:169828908-169829175(-)$1	1	0	21	35.0000
...............))))).	chr21:30798879-30799181(+)$1	1	115	136	27.7777
.....................	chr2:168791809-168792014(-)$1	1	1	22	40.6666
(((..................	chr19:49141865-49142129(-)$1	1	110	131	27.0000
..........(((((......	chr11:14796294-14796570(+)$1	1	107	128	24.7777
...))))))))))...)).))	chr18:12606236-12606502(-)$1	1	89	110	29.5555
.....................	chr11:34964248-34964537(+)$1	1	111	132	23.6666
.....................	chr3:194138541-194138806(-)$1	1	15	36	24.3333
.....................	chr11:85699492-85699755(-)$1	1	17	38	28.3333
.....................	chr11:75830214-75830532(+)$1	1	156	177	33.6666
))))).))....(((((((((	chrX:136067270-136067559(+)$1	1	190	211	25.5555
(..........((((((((.(	chr8:42361793-42362081(-)$1	1	85	106	25.1111
.....................	chr8:109233184-109233401(-)$1	1	90	111	24.3333
.....................	chr14:37794588-37794952(+)$1	1	123	144	31.2222
.....................	chr1:51973712-51973956(-)$1	1	55	76	26.7777
(((........(((.......	chr6:20668159-20668441(+)$1	1	100	121	28.4444
.....................	chr16:50253571-50253893(+)$1	1	158	179	29.3333
..............(((..((	chr5:53545065-53545396(-)$1	1	122	143	29.0000
.....................	chr19:48245380-48245658(+)$1	1	80	101	33.0000
((((.................	chr7:135834992-135835264(+)$1	1	87	108	29.3333
))))))).)))))))))))))	chr14:23536055-23536329(-)$1	1	213	234	23.3333
.....................	chrX:73047595-73047827(-)$1	1	14	35	33.4444
.....(((...((((.....(	chrX:110948998-110949259(+)$1	1	35	56	24.1111
......)).))))).......	chr5:53334958-53335242(-)$1	1	91	112	25.5555
...))))..))))...))...	chr16:12460462-12460791(+)$1	1	166	187	28.3333
.....................	chr7:129490574-129490844(-)$1	1	164	185	32.5555

#PSSM
u : 0.46	U : 0.39	c : 0.06	C : 0.02	a : 0.02	g : 0.02	
u : 0.39	c : 0.22	U : 0.13	C : 0.13	G : 0.08	A : 0.02	
u : 0.57	U : 0.28	c : 0.06	C : 0.04	A : 0.02	
c : 0.46	C : 0.28	u : 0.15	U : 0.04	a : 0.02	G : 0.02	
u : 0.62	U : 0.33	c : 0.02	C : 0.02	
u : 0.37	c : 0.22	U : 0.20	C : 0.11	G : 0.04	g : 0.04	
u : 0.55	U : 0.24	c : 0.08	C : 0.04	A : 0.04	g : 0.02	
c : 0.53	C : 0.17	U : 0.08	u : 0.08	G : 0.06	g : 0.04	
u : 0.59	U : 0.28	c : 0.08	A : 0.02	
u : 0.53	U : 0.22	c : 0.13	G : 0.04	C : 0.04	g : 0.02	
u : 0.64	U : 0.22	c : 0.04	C : 0.04	G : 0.02	A : 0.02	
c : 0.57	C : 0.26	u : 0.06	g : 0.04	A : 0.02	U : 0.02	
u : 0.57	U : 0.26	c : 0.11	A : 0.02	G : 0.02	
u : 0.48	U : 0.26	c : 0.17	C : 0.04	g : 0.02	
u : 0.66	U : 0.31	g : 0.02	
c : 0.48	u : 0.20	C : 0.20	U : 0.08	A : 0.02	
c : 0.44	u : 0.20	C : 0.17	U : 0.15	a : 0.02	
u : 0.57	U : 0.26	C : 0.06	c : 0.06	a : 0.02	
u : 0.55	U : 0.26	c : 0.08	C : 0.04	a : 0.04	
c : 0.42	C : 0.28	u : 0.24	g : 0.02	U : 0.02	
u : 0.57	U : 0.26	c : 0.08	C : 0.04	a : 0.02	

#score	1290.1111111111113
#seq	45
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_UTR_m2_run1.nuc.txt

#NT
GCUG	chr19:49842535-49842814(+)$1	279	52	56	12.0000
GCUG	chr22:39715445-39715709(-)$1	264	157	161	12.0000
GCUG	chr12:48185611-48185908(-)$1	297	33	37	12.0000
GCUG	chr1:19431247-19431488(-)$1	241	40	44	12.0000
GCUG	chr2:128050035-128050295(-)$1	260	14	18	12.0000
GCUG	chr17:8064578-8064857(-)$1	279	179	183	12.0000
GCUG	chr16:1798617-1798863(+)$1	246	45	49	12.0000
GCUG	chr16:1907489-1907848(-)$1	359	101	105	12.0000
GCUG	chr2:118694114-118694411(-)$1	297	104	108	12.0000
GCUG	chr17:1945060-1945337(+)$1	277	53	57	12.0000
GCUG	chr14:105932954-105933211(+)$1	257	44	48	12.0000
GCUG	chr9:90254599-90254872(+)$1	273	204	208	12.0000
GCUG	chr6:106773171-106773448(-)$1	277	96	100	12.0000
GCUG	chr5:131013109-131013393(-)$1	284	221	225	12.0000
GCUG	chr7:36429668-36430015(+)$1	347	132	136	12.0000
GCUG	chr6:31509563-31509830(-)$1	267	12	16	12.0000
GCUG	chr15:72542223-72542465(-)$1	242	74	78	12.0000
GCUG	chr1:1244912-1245164(+)$1	252	7	11	12.0000
GCUG	chr9:114409395-114409801(+)$1	406	23	27	12.0000
GCUG	chr17:25634898-25635151(+)$1	253	20	24	12.0000
GCUG	chr11:72423683-72423940(-)$1	257	175	179	12.0000
GCUG	chr4:152020787-152021104(+)$1	317	120	124	12.0000
GCUG	chr11:63714268-63714590(+)$1	322	19	23	12.0000
GCUG	chrX:153626655-153626875(+)$1	220	117	121	12.0000
gcug	chr15:75188602-75188950(+)$1	348	103	107	12.0000
GCUG	chr7:102939844-102940111(+)$1	267	63	67	12.0000
GCUG	chr19:10464497-10464788(-)$1	291	53	57	12.0000
GCUG	chr22:22337015-22337242(-)$1	227	6	10	12.0000
GCUG	chr17:26910522-26910803(-)$1	281	214	218	12.0000
GCUG	chr1:38273243-38273546(-)$1	303	6	10	12.0000
GCUG	chr9:139743355-139743708(+)$1	353	171	175	12.0000
GCUG	chr9:123177122-123177432(-)$1	310	296	300	12.0000
GCUG	chr11:57194249-57194564(-)$1	315	118	122	12.0000
gcug	chr1:11137264-11137510(-)$1	246	208	212	12.0000
GCUG	chr2:190314026-190314286(+)$1	260	147	151	12.0000
GCUG	chr16:29999538-29999782(+)$1	244	193	197	12.0000
GCUG	chr6:161512452-161512720(+)$1	268	36	40	12.0000
GCUG	chr2:74783307-74783569(+)$1	262	155	159	12.0000
GCUG	chr19:40847443-40847857(-)$1	414	226	230	12.0000
GCUG	chr1:76254921-76255146(+)$1	225	111	115	12.0000
GCUG	chr19:13869780-13870066(+)$1	286	5	9	12.0000
gcug	chr7:44620489-44620740(-)$1	251	221	225	12.0000
GCUG	chr11:65339995-65340271(+)$1	276	6	10	12.0000
gcug	chr6:31803116-31803382(+)$1	266	252	256	12.0000
GCUG	chr2:219081876-219082118(+)$1	242	15	19	12.0000
GCUG	chr11:46404285-46404547(+)$1	262	38	42	12.0000
GCUG	chr3:101389835-101390113(-)$1	278	103	107	12.0000
GCUG	chr16:2050121-2050404(-)$1	283	115	119	12.0000
GCUG	chr9:74979404-74979677(-)$1	273	80	84	12.0000
GCUG	chr6:10903078-10903379(+)$1	301	59	63	12.0000
gcug	chr6:143762562-143762789(-)$1	227	180	184	12.0000
GCUG	chr6:160169327-160169576(+)$1	249	129	133	12.0000
GCUG	chr22:19385372-19385622(-)$1	250	92	96	12.0000
GCUG	chr15:43693944-43694247(+)$1	303	73	77	12.0000
GCUG	chr2:38536403-38536631(-)$1	228	29	33	12.0000
GCUG	chr7:129844855-129845139(-)$1	284	81	85	12.0000
gcug	chr2:86386423-86386702(-)$1	279	196	200	12.0000
GCUG	chr16:68321673-68321950(+)$1	277	186	190	12.0000
GCUG	chr17:35512446-35512722(-)$1	276	194	198	12.0000
GCUG	chr3:158541910-158542205(+)$1	295	48	52	12.0000
GCUG	chr11:67200396-67200672(+)$1	276	131	135	12.0000
GCUG	chr3:50368591-50368880(-)$1	289	13	17	12.0000
GCUG	chr12:110937112-110937369(-)$1	257	18	22	12.0000
GCUG	chr1:31418192-31418463(-)$1	271	5	9	12.0000
GCUG	chr12:31450864-31451119(-)$1	255	24	28	12.0000
GCUG	chr5:138661842-138662109(+)$1	267	49	53	12.0000
GCUG	chr7:99696736-99697000(-)$1	264	79	83	12.0000
GCUG	chr11:122932358-122932607(-)$1	249	63	67	12.0000
GCUG	chr15:72559654-72559936(-)$1	282	74	78	12.0000
GCUG	chr14:21737309-21737594(-)$1	285	168	172	12.0000
GCUG	chr6:31865613-31865860(+)$1	247	147	151	12.0000
GCUG	chr7:99006533-99006791(+)$1	258	133	137	12.0000
GCUG	chr19:10794545-10794820(+)$1	275	12	16	12.0000
GCUG	chr13:27825713-27825985(+)$1	272	200	204	12.0000
GCUG	chr12:122199513-122199841(+)$1	328	24	28	12.0000
GCUG	chr5:140075320-140075627(+)$1	307	14	18	12.0000
GCUG	chr5:892146-892393(-)$1	247	91	95	12.0000
GCUG	chr5:43534732-43535067(-)$1	335	187	191	12.0000
GCUG	chr6:99957842-99958112(-)$1	270	112	116	12.0000
GCUG	chr12:110780110-110780438(+)$1	328	54	58	12.0000
GCUG	chr19:9435292-9435609(+)$1	317	189	193	12.0000
GCUG	chr4:57340512-57340755(+)$1	243	7	11	12.0000
GCUG	chr5:133340022-133340305(-)$1	283	35	39	12.0000
GCUG	chr2:128927804-128928107(+)$1	303	106	110	12.0000
GCUG	chr2:11605659-11606024(-)$1	365	123	127	12.0000

#otherMatches

#Struct PSSM
dddd	chr17:80397950-80398221(+)$1	271	126	130	12.0000
IIII	chr19:49842535-49842814(+)$1	279	52	56	12.0000
gggg	chr22:39715445-39715709(-)$1	264	157	161	12.0000
oooo	chr12:48185611-48185908(-)$1	297	33	37	12.0000
dddd	chr1:19431247-19431488(-)$1	241	40	44	12.0000
DDDD	chr2:128050035-128050295(-)$1	260	14	18	12.0000
hhhh	chr17:8064578-8064857(-)$1	279	179	183	12.0000
mmmm	chr16:1798617-1798863(+)$1	246	45	49	12.0000
gg]c	chr16:1907489-1907848(-)$1	359	101	105	12.0000
FFFF	chr2:118694114-118694411(-)$1	297	104	108	12.0000
dddd	chr17:1945060-1945337(+)$1	277	53	57	12.0000
mmmm	chr14:105932954-105933211(+)$1	257	44	48	12.0000
dd""	chr9:90254599-90254872(+)$1	273	204	208	12.0000
dd::	chr6:106773171-106773448(-)$1	277	96	100	12.0000
ee:G	chr5:131013109-131013393(-)$1	284	221	225	12.0000
hhqq	chr7:36429668-36430015(+)$1	347	132	136	12.0000
bbee	chr6:31509563-31509830(-)$1	267	12	16	12.0000
a!!b	chr15:72542223-72542465(-)$1	242	74	78	12.0000
DDDA	chr1:1244912-1245164(+)$1	252	7	11	12.0000
ffdd	chr9:114409395-114409801(+)$1	406	23	27	12.0000
oohh	chr17:25634898-25635151(+)$1	253	20	24	12.0000
a]a]	chr11:72423683-72423940(-)$1	257	175	179	12.0000
dddd	chr4:152020787-152021104(+)$1	317	120	124	12.0000
iiii	chr11:63714268-63714590(+)$1	322	19	23	12.0000
::dd	chrX:153626655-153626875(+)$1	220	117	121	12.0000
IIII	chr15:75188602-75188950(+)$1	348	103	107	12.0000
gg22	chr7:102939844-102940111(+)$1	267	63	67	12.0000
fffd	chr19:10464497-10464788(-)$1	291	53	57	12.0000
DDDK	chr22:22337015-22337242(-)$1	227	6	10	12.0000
gggg	chr17:26910522-26910803(-)$1	281	214	218	12.0000
ffff	chr1:38273243-38273546(-)$1	303	6	10	12.0000
eeem	chr9:139743355-139743708(+)$1	353	171	175	12.0000
eeee	chr9:123177122-123177432(-)$1	310	296	300	12.0000
ccc:	chr11:57194249-57194564(-)$1	315	118	122	12.0000
dd22	chr1:11137264-11137510(-)$1	246	208	212	12.0000
::HH	chr2:190314026-190314286(+)$1	260	147	151	12.0000
dd[b	chr16:29999538-29999782(+)$1	244	193	197	12.0000
cc[e	chr6:161512452-161512720(+)$1	268	36	40	12.0000
dddd	chr2:74783307-74783569(+)$1	262	155	159	12.0000
eee[	chr19:40847443-40847857(-)$1	414	226	230	12.0000
d:EE	chr1:76254921-76255146(+)$1	225	111	115	12.0000
FFFF	chr19:13869780-13870066(+)$1	286	5	9	12.0000
}DDD	chr7:44620489-44620740(-)$1	251	221	225	12.0000
CCC{	chr11:65339995-65340271(+)$1	276	6	10	12.0000
dd:G	chr6:31803116-31803382(+)$1	266	252	256	12.0000
IIII	chr2:219081876-219082118(+)$1	242	15	19	12.0000
ee[c	chr11:46404285-46404547(+)$1	262	38	42	12.0000
dddd	chr3:101389835-101390113(-)$1	278	103	107	12.0000
gggg	chr16:2050121-2050404(-)$1	283	115	119	12.0000
22dd	chr9:74979404-74979677(-)$1	273	80	84	12.0000
e[bb	chr6:10903078-10903379(+)$1	301	59	63	12.0000
dddd	chr6:143762562-143762789(-)$1	227	180	184	12.0000
mbb=	chr6:160169327-160169576(+)$1	249	129	133	12.0000
eeee	chr22:19385372-19385622(-)$1	250	92	96	12.0000
ff[b	chr15:43693944-43694247(+)$1	303	73	77	12.0000
cccg	chr2:38536403-38536631(-)$1	228	29	33	12.0000
fff4	chr7:129844855-129845139(-)$1	284	81	85	12.0000
ffff	chr2:86386423-86386702(-)$1	279	196	200	12.0000
c22c	chr16:68321673-68321950(+)$1	277	186	190	12.0000
dddd	chr17:35512446-35512722(-)$1	276	194	198	12.0000
]ddd	chr3:158541910-158542205(+)$1	295	48	52	12.0000
e!!b	chr11:67200396-67200672(+)$1	276	131	135	12.0000
ffff	chr3:50368591-50368880(-)$1	289	13	17	12.0000
:ccc	chr12:110937112-110937369(-)$1	257	18	22	12.0000
LLHH	chr1:31418192-31418463(-)$1	271	5	9	12.0000
gggc	chr12:31450864-31451119(-)$1	255	24	28	12.0000
DDDD	chr5:138661842-138662109(+)$1	267	49	53	12.0000
FF::	chr7:99696736-99697000(-)$1	264	79	83	12.0000
oeee	chr11:122932358-122932607(-)$1	249	63	67	12.0000
=!!b	chr15:72559654-72559936(-)$1	282	74	78	12.0000
]ccc	chr14:21737309-21737594(-)$1	285	168	172	12.0000
dddt	chr6:31865613-31865860(+)$1	247	147	151	12.0000
gggg	chr7:99006533-99006791(+)$1	258	133	137	12.0000
ffff	chr19:10794545-10794820(+)$1	275	12	16	12.0000
ddd]	chr13:27825713-27825985(+)$1	272	200	204	12.0000
bb::	chr12:122199513-122199841(+)$1	328	24	28	12.0000
GGGG	chr5:140075320-140075627(+)$1	307	14	18	12.0000
BB{I	chr5:892146-892393(-)$1	247	91	95	12.0000
ddd]	chr5:43534732-43535067(-)$1	335	187	191	12.0000
GGGG	chr6:99957842-99958112(-)$1	270	112	116	12.0000
feee	chr12:110780110-110780438(+)$1	328	54	58	12.0000
bb]c	chr19:9435292-9435609(+)$1	317	189	193	12.0000
MCCC	chr4:57340512-57340755(+)$1	243	7	11	12.0000
dddd	chr5:133340022-133340305(-)$1	283	35	39	12.0000
ee[c	chr2:128927804-128928107(+)$1	303	106	110	12.0000
ccce	chr2:11605659-11606024(-)$1	365	123	127	12.0000

#DB
((((	chr17:80397950-80398221(+)$1	1	126	130	12.0000
((((	chr19:49842535-49842814(+)$1	1	52	56	12.0000
))))	chr22:39715445-39715709(-)$1	1	157	161	12.0000
....	chr12:48185611-48185908(-)$1	1	33	37	12.0000
((((	chr1:19431247-19431488(-)$1	1	40	44	12.0000
((((	chr2:128050035-128050295(-)$1	1	14	18	12.0000
((((	chr17:8064578-8064857(-)$1	1	179	183	12.0000
....	chr16:1798617-1798863(+)$1	1	45	49	12.0000
)).)	chr16:1907489-1907848(-)$1	1	101	105	12.0000
((((	chr2:118694114-118694411(-)$1	1	104	108	12.0000
))))	chr17:1945060-1945337(+)$1	1	53	57	12.0000
....	chr14:105932954-105933211(+)$1	1	44	48	12.0000
((..	chr9:90254599-90254872(+)$1	1	204	208	12.0000
))..	chr6:106773171-106773448(-)$1	1	96	100	12.0000
)).)	chr5:131013109-131013393(-)$1	1	221	225	12.0000
((..	chr7:36429668-36430015(+)$1	1	132	136	12.0000
((((	chr6:31509563-31509830(-)$1	1	12	16	12.0000
(..(	chr15:72542223-72542465(-)$1	1	74	78	12.0000
((((	chr1:1244912-1245164(+)$1	1	7	11	12.0000
((((	chr9:114409395-114409801(+)$1	1	23	27	12.0000
..))	chr17:25634898-25635151(+)$1	1	20	24	12.0000
).).	chr11:72423683-72423940(-)$1	1	175	179	12.0000
((((	chr4:152020787-152021104(+)$1	1	120	124	12.0000
((((	chr11:63714268-63714590(+)$1	1	19	23	12.0000
..((	chrX:153626655-153626875(+)$1	1	117	121	12.0000
((((	chr15:75188602-75188950(+)$1	1	103	107	12.0000
))..	chr7:102939844-102940111(+)$1	1	63	67	12.0000
((((	chr19:10464497-10464788(-)$1	1	53	57	12.0000
(((.	chr22:22337015-22337242(-)$1	1	6	10	12.0000
))))	chr17:26910522-26910803(-)$1	1	214	218	12.0000
((((	chr1:38273243-38273546(-)$1	1	6	10	12.0000
(((.	chr9:139743355-139743708(+)$1	1	171	175	12.0000
))))	chr9:123177122-123177432(-)$1	1	296	300	12.0000
))).	chr11:57194249-57194564(-)$1	1	118	122	12.0000
))..	chr1:11137264-11137510(-)$1	1	208	212	12.0000
..((	chr2:190314026-190314286(+)$1	1	147	151	12.0000
((.(	chr16:29999538-29999782(+)$1	1	193	197	12.0000
((.(	chr6:161512452-161512720(+)$1	1	36	40	12.0000
))))	chr2:74783307-74783569(+)$1	1	155	159	12.0000
(((.	chr19:40847443-40847857(-)$1	1	226	230	12.0000
).))	chr1:76254921-76255146(+)$1	1	111	115	12.0000
((((	chr19:13869780-13870066(+)$1	1	5	9	12.0000
.)))	chr7:44620489-44620740(-)$1	1	221	225	12.0000
(((.	chr11:65339995-65340271(+)$1	1	6	10	12.0000
)).)	chr6:31803116-31803382(+)$1	1	252	256	12.0000
((((	chr2:219081876-219082118(+)$1	1	15	19	12.0000
((.(	chr11:46404285-46404547(+)$1	1	38	42	12.0000
((((	chr3:101389835-101390113(-)$1	1	103	107	12.0000
((((	chr16:2050121-2050404(-)$1	1	115	119	12.0000
..))	chr9:74979404-74979677(-)$1	1	80	84	12.0000
(.((	chr6:10903078-10903379(+)$1	1	59	63	12.0000
((((	chr6:143762562-143762789(-)$1	1	180	184	12.0000
.)))	chr6:160169327-160169576(+)$1	1	129	133	12.0000
((((	chr22:19385372-19385622(-)$1	1	92	96	12.0000
((.(	chr15:43693944-43694247(+)$1	1	73	77	12.0000
((((	chr2:38536403-38536631(-)$1	1	29	33	12.0000
))).	chr7:129844855-129845139(-)$1	1	81	85	12.0000
((((	chr2:86386423-86386702(-)$1	1	196	200	12.0000
)..)	chr16:68321673-68321950(+)$1	1	186	190	12.0000
((((	chr17:35512446-35512722(-)$1	1	194	198	12.0000
.)))	chr3:158541910-158542205(+)$1	1	48	52	12.0000
(..(	chr11:67200396-67200672(+)$1	1	131	135	12.0000
((((	chr3:50368591-50368880(-)$1	1	13	17	12.0000
.(((	chr12:110937112-110937369(-)$1	1	18	22	12.0000
..((	chr1:31418192-31418463(-)$1	1	5	9	12.0000
((((	chr12:31450864-31451119(-)$1	1	24	28	12.0000
((((	chr5:138661842-138662109(+)$1	1	49	53	12.0000
((..	chr7:99696736-99697000(-)$1	1	79	83	12.0000
.)))	chr11:122932358-122932607(-)$1	1	63	67	12.0000
(..(	chr15:72559654-72559936(-)$1	1	74	78	12.0000
.)))	chr14:21737309-21737594(-)$1	1	168	172	12.0000
(((.	chr6:31865613-31865860(+)$1	1	147	151	12.0000
))))	chr7:99006533-99006791(+)$1	1	133	137	12.0000
((((	chr19:10794545-10794820(+)$1	1	12	16	12.0000
))).	chr13:27825713-27825985(+)$1	1	200	204	12.0000
))..	chr12:122199513-122199841(+)$1	1	24	28	12.0000
((((	chr5:140075320-140075627(+)$1	1	14	18	12.0000
((.(	chr5:892146-892393(-)$1	1	91	95	12.0000
))).	chr5:43534732-43535067(-)$1	1	187	191	12.0000
))))	chr6:99957842-99958112(-)$1	1	112	116	12.0000
((((	chr12:110780110-110780438(+)$1	1	54	58	12.0000
)).)	chr19:9435292-9435609(+)$1	1	189	193	12.0000
.(((	chr4:57340512-57340755(+)$1	1	7	11	12.0000
))))	chr5:133340022-133340305(-)$1	1	35	39	12.0000
((.(	chr2:128927804-128928107(+)$1	1	106	110	12.0000
))))	chr2:11605659-11606024(-)$1	1	123	127	12.0000

#PSSM
G : 0.93	g : 0.06	
C : 0.93	c : 0.06	
U : 0.93	u : 0.06	
G : 0.93	g : 0.06	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_UTR_m1_run1.nuc.txt

#NT
AGGGUGGGGG	chr2:97525527-97525828(-)$1	301	56	66	21.1764
GGGGAGGGGG	chr17:79878338-79878589(-)$1	251	158	168	20.9803
GGGGUGGGAG	chr16:89762524-89762767(+)$1	243	74	84	19.5098
GGGGAGGGGG	chr6:33164046-33164354(-)$1	308	15	25	20.9803
GGGGUCGGGG	chr12:56498355-56498640(+)$1	285	269	279	19.6078
GGUGUGGGGG	chr16:1821053-1821341(-)$1	288	90	100	19.7058
GGGGUGGGGG	chr3:9519600-9519847(+)$1	247	91	101	24.0196
GCGGUGGGGG	chr17:79991773-79992024(+)$1	251	31	41	19.9019
gggguggggg	chr15:64752909-64753137(+)$1	228	11	21	24.0196
GGGGCGGGGG	chr12:56122310-56122595(-)$1	285	90	100	20.1960
AGGGUGGGUG	chr19:58367296-58367560(+)$1	264	97	107	16.6666
GGGGUGUGGG	chr16:8948715-8948975(-)$1	260	114	124	20.0000
GGGGUGGGGC	chr11:404647-404971(+)$1	324	124	134	19.7058
GGGGUGGGGA	chr17:38286190-38286478(+)$1	288	139	149	19.5098
CGGGUGAGGG	chr3:196230254-196230506(-)$1	252	102	112	16.5686
UGGGUGGGGG	chr19:19021694-19021908(-)$1	214	200	210	20.9803
gggaaggggg	chr17:43225897-43226184(+)$1	287	17	27	16.2745
UGGGGGGGGG	chr11:67165674-67165963(-)$1	289	21	31	17.1568
GGGGAGGGGG	chr1:59247155-59247411(-)$1	256	7	17	20.9803
GCAGUGGGGG	chr6:32945977-32946268(+)$1	291	121	131	15.9803
GGAGUGGGGG	chr22:40805055-40805333(+)$1	278	0	10	20.0980
UUGGUGGGGG	chr11:770333-770579(-)$1	246	101	111	16.6666
gGGGUGGGCG	chr10:101379905-101380194(-)$1	289	73	83	19.6078
GGGGUGGGGG	chr16:3074007-3074300(+)$1	293	95	105	24.0196
UGGGUGGGGG	chr9:139729816-139730072(+)$1	256	89	99	20.9803
GGGGAGGUGG	chr16:88718430-88718690(-)$1	260	99	109	16.4705
GGGGAGGGGG	chr2:62932886-62933152(+)$1	266	16	26	20.9803
AGGGUGGGGG	chr11:289411-289663(+)$1	252	70	80	21.1764
AGGGUCGGGG	chr9:131398221-131398481(-)$1	260	121	131	16.7647
GGGGAGGGGG	chr17:73775397-73775723(-)$1	326	293	303	20.9803
GGGGAGGGGG	chr17:43227632-43227876(+)$1	244	20	30	20.9803
GGGGUGAGGG	chr21:47609855-47610142(-)$1	287	9	19	19.8039
CAGGUGGGGG	chr16:23701454-23701690(+)$1	236	66	76	16.5686
GGGGUGGGGC	chr5:53180041-53180290(-)$1	249	50	60	19.7058
GGGGUGGGGG	chr19:14628515-14628761(-)$1	246	94	104	24.0196
GGGGUGUGGG	chr10:73576084-73576332(-)$1	248	97	107	20.0000
CGGCUGGGGG	chr6:76311783-76312086(+)$1	303	101	111	16.0784
GGGGUgggcg	chr19:6739618-6739892(+)$1	274	18	28	19.6078
GGGGUCGGGG	chr1:87380287-87380651(+)$1	364	122	132	19.6078
GGGGAGGGGG	chr17:43227556-43227794(+)$1	238	96	106	20.9803
AGGGUGGGGG	chr1:155658335-155658594(-)$1	259	31	41	21.1764
gggguggggg	chr2:54197781-54198043(-)$1	262	64	74	24.0196
GGAGUGGAGG	chr1:228336383-228336642(+)$1	259	124	134	15.7843
GGGGUGGAGG	chr3:38206942-38207236(+)$1	294	102	112	19.7058
GAAGUGGGGG	chrX:20284844-20285190(-)$1	346	62	72	15.8823
GGAGUGGGGG	chr8:101964387-101964694(-)$1	307	103	113	20.0980
AGGGUGGAGG	chr16:30535517-30535775(-)$1	258	69	79	16.8627
GGGGUGUGGG	chrX:153236493-153236760(-)$1	267	51	61	20.0000
UGGGUGGGGC	chr19:50363663-50363905(+)$1	242	118	128	16.6666
AGGGUGUGGG	chr17:40852869-40853131(-)$1	262	74	84	17.1568

#otherMatches

#Struct PSSM
ffa]eeeee2	chr8:145691423-145691676(+)$1	253	59	69	19.9019
eee"""a[ff	chr2:97525527-97525828(-)$1	301	56	66	21.1764
::eeeeeeee	chr17:79878338-79878589(-)$1	251	158	168	20.9803
gggggg####	chr16:89762524-89762767(+)$1	243	74	84	19.5098
JJJJJJJJJJ	chr6:33164046-33164354(-)$1	308	15	25	20.9803
FFFF}FFFFF	chr12:56498355-56498640(+)$1	285	269	279	19.6078
DDLLLEEEEE	chr16:1821053-1821341(-)$1	288	90	100	19.7058
ffffff%%%%	chr3:9519600-9519847(+)$1	247	91	101	24.0196
ppppa]a]cc	chr17:79991773-79992024(+)$1	251	31	41	19.9019
!!a[bb[ddd	chr15:64752909-64753137(+)$1	228	11	21	24.0196
LLIIIIIIII	chr12:56122310-56122595(-)$1	285	90	100	20.1960
eee:::a[dd	chr19:58367296-58367560(+)$1	264	97	107	16.6666
eee[dddd[d	chr16:8948715-8948975(-)$1	260	114	124	20.0000
fffffGGGGG	chr11:404647-404971(+)$1	324	124	134	19.7058
!gggggggnn	chr17:38286190-38286478(+)$1	288	139	149	19.5098
gggg[a[bb[	chr3:196230254-196230506(-)$1	252	102	112	16.5686
BBDDDDYYCC	chr19:19021694-19021908(-)$1	214	200	210	20.9803
KKBB{DDDDK	chr17:43225897-43226184(+)$1	287	17	27	16.2745
ddddhhhhhh	chr11:67165674-67165963(-)$1	289	21	31	17.1568
ff####a[ee	chr1:59247155-59247411(-)$1	256	7	17	20.9803
b22a]bbfff	chr6:32945977-32946268(+)$1	291	121	131	15.9803
JJJJJJJJJJ	chr22:40805055-40805333(+)$1	278	0	10	20.0980
]gggggggcc	chr11:770333-770579(-)$1	246	101	111	16.6666
a22bb]a]ff	chr10:101379905-101380194(-)$1	289	73	83	19.6078
ff[bb[ffff	chr16:3074007-3074300(+)$1	293	95	105	24.0196
fff[ffffff	chr9:139729816-139730072(+)$1	256	89	99	20.9803
JJJJ:=====	chr16:88718430-88718690(-)$1	260	99	109	16.4705
""ccc[bb[b	chr2:62932886-62933152(+)$1	266	16	26	20.9803
>a]hhhhhhh	chr11:289411-289663(+)$1	252	70	80	21.1764
JJJJJJJJJJ	chr9:131398221-131398481(-)$1	260	121	131	16.7647
5=========	chr17:73775397-73775723(-)$1	326	293	303	20.9803
GGGGGG{CCC	chr17:43227632-43227876(+)$1	244	20	30	20.9803
EDDDD{FFFF	chr21:47609855-47610142(-)$1	287	9	19	19.8039
c:GGGGGGG:	chr16:23701454-23701690(+)$1	236	66	76	16.5686
cdddd4444b	chr5:53180041-53180290(-)$1	249	50	60	19.7058
eee]bb]ddd	chr19:14628515-14628761(-)$1	246	94	104	24.0196
eeccc]hhhh	chr10:73576084-73576332(-)$1	248	97	107	20.0000
[eeeee[ddd	chr6:76311783-76312086(+)$1	303	101	111	16.0784
dddd[dddd!	chr19:6739618-6739892(+)$1	274	18	28	19.6078
d!!ffffff!	chr1:87380287-87380651(+)$1	364	122	132	19.6078
bFFFFFF}CC	chr17:43227556-43227794(+)$1	238	96	106	20.9803
uuuubb]a]d	chr1:155658335-155658594(-)$1	259	31	41	21.1764
odddd::eee	chr2:54197781-54198043(-)$1	262	64	74	24.0196
bb]dddd444	chr1:228336383-228336642(+)$1	259	124	134	15.7843
FFFFF{A{A{	chr3:38206942-38207236(+)$1	294	102	112	19.7058
iiiiiiiii:	chrX:20284844-20285190(-)$1	346	62	72	15.8823
:::BB{DDDD	chr8:101964387-101964694(-)$1	307	103	113	20.0980
hhhhhh!!ap	chr16:30535517-30535775(-)$1	258	69	79	16.8627
ffffff]bb:	chrX:153236493-153236760(-)$1	267	51	61	20.0000
gggoooooog	chr19:50363663-50363905(+)$1	242	118	128	16.6666
HHHH:::ddd	chr17:40852869-40853131(-)$1	262	74	84	17.1568

#DB
))).))))).	chr8:145691423-145691676(+)$1	1	59	69	19.9019
(((...(.((	chr2:97525527-97525828(-)$1	1	56	66	21.1764
..((((((((	chr17:79878338-79878589(-)$1	1	158	168	20.9803
((((((....	chr16:89762524-89762767(+)$1	1	74	84	19.5098
((((((((((	chr6:33164046-33164354(-)$1	1	15	25	20.9803
)))).)))))	chr12:56498355-56498640(+)$1	1	269	279	19.6078
((...(((((	chr16:1821053-1821341(-)$1	1	90	100	19.7058
((((((....	chr3:9519600-9519847(+)$1	1	91	101	24.0196
....).).))	chr17:79991773-79992024(+)$1	1	31	41	19.9019
..(.((.(((	chr15:64752909-64753137(+)$1	1	11	21	24.0196
..((((((((	chr12:56122310-56122595(-)$1	1	90	100	20.1960
)))...(.((	chr19:58367296-58367560(+)$1	1	97	107	16.6666
(((.((((.(	chr16:8948715-8948975(-)$1	1	114	124	20.0000
)))))(((((	chr11:404647-404971(+)$1	1	124	134	19.7058
.(((((((..	chr17:38286190-38286478(+)$1	1	139	149	19.5098
((((.(.((.	chr3:196230254-196230506(-)$1	1	102	112	16.5686
))))))..))	chr19:19021694-19021908(-)$1	1	200	210	20.9803
..((.((((.	chr17:43225897-43226184(+)$1	1	17	27	16.2745
((((((((((	chr11:67165674-67165963(-)$1	1	21	31	17.1568
((....(.((	chr1:59247155-59247411(-)$1	1	7	17	20.9803
)..).)))))	chr6:32945977-32946268(+)$1	1	121	131	15.9803
((((((((((	chr22:40805055-40805333(+)$1	1	0	10	20.0980
.)))))))))	chr11:770333-770579(-)$1	1	101	111	16.6666
)..)).).))	chr10:101379905-101380194(-)$1	1	73	83	19.6078
((.((.((((	chr16:3074007-3074300(+)$1	1	95	105	24.0196
(((.((((((	chr9:139729816-139730072(+)$1	1	89	99	20.9803
((((.(((((	chr16:88718430-88718690(-)$1	1	99	109	16.4705
..(((.((.(	chr2:62932886-62933152(+)$1	1	16	26	20.9803
.).)))))))	chr11:289411-289663(+)$1	1	70	80	21.1764
))))))))))	chr9:131398221-131398481(-)$1	1	121	131	16.7647
.)))))))))	chr17:73775397-73775723(-)$1	1	293	303	20.9803
((((((.(((	chr17:43227632-43227876(+)$1	1	20	30	20.9803
(((((.((((	chr21:47609855-47610142(-)$1	1	9	19	19.8039
).(((((((.	chr16:23701454-23701690(+)$1	1	66	76	16.5686
)))))....)	chr5:53180041-53180290(-)$1	1	50	60	19.7058
))).)).)))	chr19:14628515-14628761(-)$1	1	94	104	24.0196
))))).))))	chr10:73576084-73576332(-)$1	1	97	107	20.0000
.(((((.(((	chr6:76311783-76312086(+)$1	1	101	111	16.0784
((((.((((.	chr19:6739618-6739892(+)$1	1	18	28	19.6078
(..((((((.	chr1:87380287-87380651(+)$1	1	122	132	19.6078
))))))).))	chr17:43227556-43227794(+)$1	1	96	106	20.9803
....)).).)	chr1:155658335-155658594(-)$1	1	31	41	21.1764
.))))..(((	chr2:54197781-54198043(-)$1	1	64	74	24.0196
)).))))...	chr1:228336383-228336642(+)$1	1	124	134	15.7843
(((((.(.(.	chr3:38206942-38207236(+)$1	1	102	112	19.7058
))))))))).	chrX:20284844-20285190(-)$1	1	62	72	15.8823
...((.((((	chr8:101964387-101964694(-)$1	1	103	113	20.0980
((((((..(.	chr16:30535517-30535775(-)$1	1	69	79	16.8627
)))))).)).	chrX:153236493-153236760(-)$1	1	51	61	20.0000
(((......)	chr19:50363663-50363905(+)$1	1	118	128	16.6666
((((...(((	chr17:40852869-40853131(-)$1	1	74	84	17.1568

#PSSM
G : 0.62	A : 0.13	U : 0.09	g : 0.07	C : 0.05	
G : 0.82	C : 0.05	g : 0.05	A : 0.03	U : 0.01	
G : 0.82	A : 0.09	g : 0.05	U : 0.01	
G : 0.92	g : 0.03	a : 0.01	C : 0.01	
U : 0.74	A : 0.15	u : 0.03	C : 0.01	a : 0.01	G : 0.01	
G : 0.86	g : 0.07	C : 0.05	
G : 0.80	g : 0.07	U : 0.07	A : 0.03	
G : 0.84	g : 0.07	A : 0.05	U : 0.01	
G : 0.86	g : 0.05	A : 0.01	U : 0.01	C : 0.01	c : 0.01	
G : 0.84	g : 0.07	C : 0.05	A : 0.01	

#score	996.2745098039221
#seq	51
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_transcript_m3_run1.nuc.txt

#NT
gaagaggacgaccauccccgauagaggaggaccggucuuuggucaaggguauacgaguagcugc	chr13:99857969-99858178(+)$1	209	133	197	184.5000
gaagaggacgaccauccccgauagaggaggaccggacuucggucaaggguacacgaguagcugc	chr2:76672299-76672512(-)$1	213	117	181	180.7500
gaagaggacgaccaaccccgauagaggaggaccggucuucggucaaggguauacgaguagcugc	chr16:81995542-81995790(+)$1	248	129	193	182.0000
gaagaggacgaccauccccgauagaggaggaccggacuucggucaaggguacacgaguagcugc	chr2:76672312-76672546(-)$1	234	151	215	180.7500
gaagaggacgaccauccccgacagaggaggaccagucuucggucaaggguauacgaguagcugc	chr14:90178863-90179109(+)$1	246	132	196	178.2500
gaagaggacgaccauccccgauagaggaggaccggucuuuggucaaggguauacgaguagcugc	chr13:99857917-99858166(+)$1	249	185	249	184.5000
gaagaggacgaccauccccgauagaggaggaccggucuuuggucaaggguauacgaguagcugc	chr13:99857978-99858222(+)$1	244	124	188	184.5000

#otherMatches

#Struct PSSM
b22dddd::dddd[cccbboooooobb]ccc22dddd:::BBYYJJJJJJJJJJ______DDDD	chr12:112704858-112705105(+)$1	247	163	227	185.7500
bb]eeeee:dddd[cccbboooooobb]ccc22dddd::::::::DDDD}DDDDddddoooooo	chr13:99857969-99858178(+)$1	209	133	197	184.5000
a]bb]eeeee22ccc333bb22bb]ddddeeeeennnnneeeeeEEEEE}DDDD______DDDD	chr2:76672299-76672512(-)$1	213	117	181	180.7500
"""a[bbqqqqqqqqbb]a4444bbdddd22accc]ffffff333dddd:::::CCC{DDDD::	chr16:81995542-81995790(+)$1	248	129	193	182.0000
epppppppeeeee:cccbboooooobb]ccc:CCC}FFFFFFZZZDDDDYYCCCccc"""ccc[	chr2:76672312-76672546(-)$1	234	151	215	180.7500
d!!bbbbmmmmbb]bb22dddd]ccc666666ccc]ffffff333dddd22dddd]a]ccc::D	chr14:90178863-90179109(+)$1	246	132	196	178.2500
a]bb]eeeee22bbcccbboooooobb]ccc:::FFFFFFYYCCCYYCCC}CCC}BB:::::::	chr13:99857917-99858166(+)$1	249	185	249	184.5000
bb]eeeee:dddd[cccbboooooobb]ccc22dddd::::::::DDDD}DDDD______DDDD	chr13:99857978-99858222(+)$1	244	124	188	184.5000

#DB
)..))))..((((.(((((......)).)))..))))...))..))))))))))......))))	chr12:112704858-112705105(+)$1	1	163	227	185.7500
)).))))).((((.(((((......)).)))..))))........)))).))))((((......	chr13:99857969-99858178(+)$1	1	133	197	184.5000
).)).)))))..)))...))..)).))))(((((.....)))))))))).))))......))))	chr2:76672299-76672512(-)$1	1	117	181	180.7500
...(.((........)).)....))))))..)))).))))))...)))).....(((.((((..	chr16:81995542-81995790(+)$1	1	129	193	182.0000
(.......))))).(((((......)).))).))).))))))...))))..)))(((...(((.	chr2:76672312-76672546(-)$1	1	151	215	180.7500
(..((((....)).))..)))).)))......))).))))))...))))..)))).).)))..)	chr14:90178863-90179109(+)$1	1	132	196	178.2500
).)).)))))..))(((((......)).)))...))))))..)))..))).))).)).......	chr13:99857917-99858166(+)$1	1	185	249	184.5000
)).))))).((((.(((((......)).)))..))))........)))).))))......))))	chr13:99857978-99858222(+)$1	1	124	188	184.5000

#PSSM
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 0.87	a : 0.12	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
u : 0.87	c : 0.12	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
g : 0.87	a : 0.12	
g : 1.00	
u : 0.75	a : 0.25	
c : 1.00	
u : 1.00	
u : 1.00	
c : 0.62	u : 0.37	
g : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
u : 0.75	c : 0.25	
a : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	

#score	1461.0
#seq	8
#width	64
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_UTR_m2_run1.nuc.txt

#NT
GAA	chr3:79067710-79067982(-)$1	272	57	60	9.0000
GAA	chr17:74059953-74060255(-)$1	302	31	34	9.0000
GAA	chr16:89357314-89357581(-)$1	267	9	12	9.0000
GAA	chr8:11666201-11666440(+)$1	239	121	124	9.0000
GAA	chr14:73577561-73577869(+)$1	308	28	31	9.0000
GAA	chr15:44085120-44085347(+)$1	227	80	83	9.0000
GAA	chr12:56748915-56749190(-)$1	275	20	23	9.0000
GAA	chr1:8568596-8568835(-)$1	239	14	17	9.0000
gaa	chr14:102549280-102549501(-)$1	221	38	41	9.0000
GAA	chr3:184039649-184039949(+)$1	300	88	91	9.0000
GAA	chr9:116999865-117000083(+)$1	218	8	11	9.0000
GAA	chr17:79894676-79894916(-)$1	240	37	40	9.0000
GAA	chr13:107211743-107212033(-)$1	290	38	41	9.0000
GAA	chr16:24802661-24802912(+)$1	251	35	38	9.0000
GAA	chr3:184102300-184102580(+)$1	280	77	80	9.0000
GAA	chr19:10791889-10792128(+)$1	239	45	48	9.0000
GAA	chr6:136582341-136582676(-)$1	335	3	6	9.0000
GAA	chr1:1322554-1322775(-)$1	221	10	13	9.0000
GAA	chr1:46080891-46081244(+)$1	353	34	37	9.0000
GAA	chr3:196666113-196666336(-)$1	223	23	26	9.0000
GAA	chr2:74749716-74749993(-)$1	277	58	61	9.0000
GAA	chr14:70235829-70236082(+)$1	253	12	15	9.0000
GAA	chr2:65658991-65659271(-)$1	280	70	73	9.0000
GAA	chr4:76580226-76580531(-)$1	305	40	43	9.0000
GAA	chr11:129991408-129991621(+)$1	213	116	119	9.0000
GAA	chr17:39977955-39978159(+)$1	204	69	72	9.0000
GAA	chr17:27449084-27449337(-)$1	253	68	71	9.0000
GAA	chr8:17613226-17613537(-)$1	311	1	4	9.0000
GAA	chr11:130003462-130003686(+)$1	224	85	88	9.0000
GAA	chr14:74764529-74764855(-)$1	326	42	45	9.0000
GAA	chr17:56082721-56082935(-)$1	214	14	17	9.0000
GAA	chr16:28884881-28885162(+)$1	281	25	28	9.0000
GAA	chr19:1271880-1272151(+)$1	271	1	4	9.0000
GAA	chr2:27260914-27261183(+)$1	269	19	22	9.0000
GAA	chr5:137498731-137499056(-)$1	325	47	50	9.0000
GAA	chr6:31499022-31499250(-)$1	228	82	85	9.0000
GAA	chr9:139700572-139700879(+)$1	307	46	49	9.0000
gaa	chr5:74100906-74101203(-)$1	297	16	19	9.0000
GAA	chr7:134632329-134632621(+)$1	292	41	44	9.0000
GAA	chr19:5641650-5641909(+)$1	259	123	126	9.0000
GAA	chr17:46052790-46053040(+)$1	250	92	95	9.0000
GAA	chr9:139734995-139735263(+)$1	268	101	104	9.0000
GAA	chr12:26633974-26634223(-)$1	249	12	15	9.0000
GAA	chr3:42684729-42684986(+)$1	257	162	165	9.0000
GAA	chr16:24805866-24806141(+)$1	275	49	52	9.0000
GAA	chr19:10791824-10792088(+)$1	264	20	23	9.0000
GAA	chr14:102549332-102549643(-)$1	311	42	45	9.0000
GAA	chr12:114403897-114404167(-)$1	270	74	77	9.0000
GAA	chr7:73010433-73010659(-)$1	226	62	65	9.0000
GAA	chr10:45465512-45465773(+)$1	261	129	132	9.0000
GAA	chr6:31936419-31936671(+)$1	252	17	20	9.0000
GAA	chr9:95022332-95022569(-)$1	237	77	80	9.0000
GAA	chr16:69687038-69687327(+)$1	289	99	102	9.0000
GAA	chr2:61406188-61406406(+)$1	218	29	32	9.0000
GAA	chr19:5626318-5626600(+)$1	282	41	44	9.0000
GAA	chr5:74109564-74109836(-)$1	272	58	61	9.0000
GAA	chr2:216981281-216981543(+)$1	262	30	33	9.0000
GAA	chr14:39748446-39748658(+)$1	212	33	36	9.0000
GAA	chr17:7125900-7126160(+)$1	260	14	17	9.0000
GAA	chr2:61406168-61406387(+)$1	219	16	19	9.0000
GAA	chr6:155578818-155579074(-)$1	256	0	3	9.0000
GAA	chr3:142741240-142741587(+)$1	347	38	41	9.0000
GAA	chr12:76444236-76444452(-)$1	216	31	34	9.0000
GAA	chr10:7791237-7791475(+)$1	238	75	78	9.0000
GAA	chr14:24606629-24606841(+)$1	212	20	23	9.0000
GAA	chr14:102549301-102549525(-)$1	224	2	5	9.0000
GAA	chr9:139700433-139700674(+)$1	241	18	21	9.0000
GAA	chr12:112460231-112460520(+)$1	289	11	14	9.0000
GAA	chr2:61408354-61408567(+)$1	213	75	78	9.0000
GAA	chr2:128051083-128051377(-)$1	294	9	12	9.0000
GAA	chr1:6257695-6257917(-)$1	222	63	66	9.0000
gaa	chr9:100777598-100777866(+)$1	268	52	55	9.0000
GAA	chr17:57812605-57812922(+)$1	317	33	36	9.0000
GAA	chr1:1326580-1326827(-)$1	247	23	26	9.0000
gaa	chr2:131883222-131883491(+)$1	269	18	21	9.0000
GAA	chr11:129997622-129997833(+)$1	211	43	46	9.0000
GAA	chr9:107651284-107651541(-)$1	257	80	83	9.0000
GAA	chr3:156867969-156868252(-)$1	283	33	36	9.0000
GAA	chr14:35465790-35466084(+)$1	294	13	16	9.0000
GAA	chr5:179048137-179048374(-)$1	237	68	71	9.0000
GAA	chr14:50246903-50247135(+)$1	232	26	29	9.0000
GAA	chr9:117054288-117054532(+)$1	244	47	50	9.0000
GAA	chr2:28974854-28975152(+)$1	298	2	5	9.0000
GAA	chr17:7126024-7126264(+)$1	240	42	45	9.0000
GAA	chr3:142761862-142762190(+)$1	328	16	19	9.0000
GAA	chr20:60715823-60716053(-)$1	230	66	69	9.0000
GAA	chr1:153634713-153634987(-)$1	274	5	8	9.0000
GAA	chr14:24607846-24608101(+)$1	255	39	42	9.0000
GAA	chr9:134334535-134334808(+)$1	273	15	18	9.0000
GAA	chr8:67974001-67974392(-)$1	391	97	100	9.0000
GAA	chr17:27413353-27413623(-)$1	270	40	43	9.0000
GAA	chr7:132959636-132959969(+)$1	333	125	128	9.0000
GAA	chr11:118888062-118888314(-)$1	252	3	6	9.0000
gaa	chr14:24105670-24105880(+)$1	210	24	27	9.0000
GAA	chr5:55251811-55252160(-)$1	349	24	27	9.0000
GAA	chr6:52129327-52129555(-)$1	228	11	14	9.0000
gaa	chr3:184039749-184039990(+)$1	241	0	3	9.0000

#otherMatches

#Struct PSSM
:::	chr20:34319793-34320018(-)$1	225	5	8	9.0000
ii#	chr3:79067710-79067982(-)$1	272	57	60	9.0000
444	chr17:74059953-74060255(-)$1	302	31	34	9.0000
::a	chr16:89357314-89357581(-)$1	267	9	12	9.0000
E::	chr8:11666201-11666440(+)$1	239	121	124	9.0000
###	chr14:73577561-73577869(+)$1	308	28	31	9.0000
:::	chr15:44085120-44085347(+)$1	227	80	83	9.0000
dpp	chr12:56748915-56749190(-)$1	275	20	23	9.0000
===	chr1:8568596-8568835(-)$1	239	14	17	9.0000
FFF	chr14:102549280-102549501(-)$1	221	38	41	9.0000
555	chr3:184039649-184039949(+)$1	300	88	91	9.0000
ff!	chr9:116999865-117000083(+)$1	218	8	11	9.0000
:::	chr17:79894676-79894916(-)$1	240	37	40	9.0000
+++	chr13:107211743-107212033(-)$1	290	38	41	9.0000
JJJ	chr16:24802661-24802912(+)$1	251	35	38	9.0000
22=	chr3:184102300-184102580(+)$1	280	77	80	9.0000
rrr	chr19:10791889-10792128(+)$1	239	45	48	9.0000
:::	chr6:136582341-136582676(-)$1	335	3	6	9.0000
=ss	chr1:1322554-1322775(-)$1	221	10	13	9.0000
===	chr1:46080891-46081244(+)$1	353	34	37	9.0000
bbl	chr3:196666113-196666336(-)$1	223	23	26	9.0000
ee+	chr2:74749716-74749993(-)$1	277	58	61	9.0000
ccc	chr14:70235829-70236082(+)$1	253	12	15	9.0000
b22	chr2:65658991-65659271(-)$1	280	70	73	9.0000
ggg	chr4:76580226-76580531(-)$1	305	40	43	9.0000
22c	chr11:129991408-129991621(+)$1	213	116	119	9.0000
B::	chr17:39977955-39978159(+)$1	204	69	72	9.0000
^^^	chr17:27449084-27449337(-)$1	253	68	71	9.0000
:::	chr8:17613226-17613537(-)$1	311	1	4	9.0000
ddd	chr11:130003462-130003686(+)$1	224	85	88	9.0000
fff	chr14:74764529-74764855(-)$1	326	42	45	9.0000
ooo	chr17:56082721-56082935(-)$1	214	14	17	9.0000
:::	chr16:28884881-28885162(+)$1	281	25	28	9.0000
:::	chr19:1271880-1272151(+)$1	271	1	4	9.0000
d!!	chr2:27260914-27261183(+)$1	269	19	22	9.0000
III	chr5:137498731-137499056(-)$1	325	47	50	9.0000
eee	chr6:31499022-31499250(-)$1	228	82	85	9.0000
:::	chr9:139700572-139700879(+)$1	307	46	49	9.0000
===	chr5:74100906-74101203(-)$1	297	16	19	9.0000
:::	chr7:134632329-134632621(+)$1	292	41	44	9.0000
::I	chr19:5641650-5641909(+)$1	259	123	126	9.0000
bb:	chr17:46052790-46053040(+)$1	250	92	95	9.0000
qqe	chr9:139734995-139735263(+)$1	268	101	104	9.0000
eee	chr12:26633974-26634223(-)$1	249	12	15	9.0000
mmb	chr3:42684729-42684986(+)$1	257	162	165	9.0000
333	chr16:24805866-24806141(+)$1	275	49	52	9.0000
cc[	chr19:10791824-10792088(+)$1	264	20	23	9.0000
OOO	chr14:102549332-102549643(-)$1	311	42	45	9.0000
###	chr12:114403897-114404167(-)$1	270	74	77	9.0000
nnn	chr7:73010433-73010659(-)$1	226	62	65	9.0000
fff	chr10:45465512-45465773(+)$1	261	129	132	9.0000
:::	chr6:31936419-31936671(+)$1	252	17	20	9.0000
cc#	chr9:95022332-95022569(-)$1	237	77	80	9.0000
ooo	chr16:69687038-69687327(+)$1	289	99	102	9.0000
ddB	chr2:61406188-61406406(+)$1	218	29	32	9.0000
eee	chr19:5626318-5626600(+)$1	282	41	44	9.0000
^^e	chr5:74109564-74109836(-)$1	272	58	61	9.0000
g::	chr2:216981281-216981543(+)$1	262	30	33	9.0000
eee	chr14:39748446-39748658(+)$1	212	33	36	9.0000
fff	chr17:7125900-7126160(+)$1	260	14	17	9.0000
vvv	chr2:61406168-61406387(+)$1	219	16	19	9.0000
DDD	chr6:155578818-155579074(-)$1	256	0	3	9.0000
eee	chr3:142741240-142741587(+)$1	347	38	41	9.0000
DD{	chr12:76444236-76444452(-)$1	216	31	34	9.0000
fff	chr10:7791237-7791475(+)$1	238	75	78	9.0000
PPP	chr14:24606629-24606841(+)$1	212	20	23	9.0000
ddd	chr14:102549301-102549525(-)$1	224	2	5	9.0000
eee	chr9:139700433-139700674(+)$1	241	18	21	9.0000
sss	chr12:112460231-112460520(+)$1	289	11	14	9.0000
gg#	chr2:61408354-61408567(+)$1	213	75	78	9.0000
ppp	chr2:128051083-128051377(-)$1	294	9	12	9.0000
eee	chr1:6257695-6257917(-)$1	222	63	66	9.0000
bb3	chr9:100777598-100777866(+)$1	268	52	55	9.0000
hhh	chr17:57812605-57812922(+)$1	317	33	36	9.0000
b!!	chr1:1326580-1326827(-)$1	247	23	26	9.0000
dd:	chr2:131883222-131883491(+)$1	269	18	21	9.0000
eee	chr11:129997622-129997833(+)$1	211	43	46	9.0000
ooe	chr9:107651284-107651541(-)$1	257	80	83	9.0000
"""	chr3:156867969-156868252(-)$1	283	33	36	9.0000
dmm	chr14:35465790-35466084(+)$1	294	13	16	9.0000
pcc	chr5:179048137-179048374(-)$1	237	68	71	9.0000
cc"	chr14:50246903-50247135(+)$1	232	26	29	9.0000
:::	chr9:117054288-117054532(+)$1	244	47	50	9.0000
FFF	chr2:28974854-28975152(+)$1	298	2	5	9.0000
===	chr17:7126024-7126264(+)$1	240	42	45	9.0000
:::	chr3:142761862-142762190(+)$1	328	16	19	9.0000
aff	chr20:60715823-60716053(-)$1	230	66	69	9.0000
%%%	chr1:153634713-153634987(-)$1	274	5	8	9.0000
f##	chr14:24607846-24608101(+)$1	255	39	42	9.0000
guu	chr9:134334535-134334808(+)$1	273	15	18	9.0000
FF:	chr8:67974001-67974392(-)$1	391	97	100	9.0000
FF:	chr17:27413353-27413623(-)$1	270	40	43	9.0000
ddd	chr7:132959636-132959969(+)$1	333	125	128	9.0000
:::	chr11:118888062-118888314(-)$1	252	3	6	9.0000
:::	chr14:24105670-24105880(+)$1	210	24	27	9.0000
{DD	chr5:55251811-55252160(-)$1	349	24	27	9.0000
GGG	chr6:52129327-52129555(-)$1	228	11	14	9.0000
:::	chr3:184039749-184039990(+)$1	241	0	3	9.0000

#DB
...	chr20:34319793-34320018(-)$1	1	5	8	9.0000
((.	chr3:79067710-79067982(-)$1	1	57	60	9.0000
...	chr17:74059953-74060255(-)$1	1	31	34	9.0000
..(	chr16:89357314-89357581(-)$1	1	9	12	9.0000
(..	chr8:11666201-11666440(+)$1	1	121	124	9.0000
...	chr14:73577561-73577869(+)$1	1	28	31	9.0000
...	chr15:44085120-44085347(+)$1	1	80	83	9.0000
(..	chr12:56748915-56749190(-)$1	1	20	23	9.0000
(((	chr1:8568596-8568835(-)$1	1	14	17	9.0000
(((	chr14:102549280-102549501(-)$1	1	38	41	9.0000
...	chr3:184039649-184039949(+)$1	1	88	91	9.0000
((.	chr9:116999865-117000083(+)$1	1	8	11	9.0000
...	chr17:79894676-79894916(-)$1	1	37	40	9.0000
...	chr13:107211743-107212033(-)$1	1	38	41	9.0000
(((	chr16:24802661-24802912(+)$1	1	35	38	9.0000
..)	chr3:184102300-184102580(+)$1	1	77	80	9.0000
...	chr19:10791889-10792128(+)$1	1	45	48	9.0000
...	chr6:136582341-136582676(-)$1	1	3	6	9.0000
(..	chr1:1322554-1322775(-)$1	1	10	13	9.0000
(((	chr1:46080891-46081244(+)$1	1	34	37	9.0000
((.	chr3:196666113-196666336(-)$1	1	23	26	9.0000
((.	chr2:74749716-74749993(-)$1	1	58	61	9.0000
(((	chr14:70235829-70236082(+)$1	1	12	15	9.0000
)..	chr2:65658991-65659271(-)$1	1	70	73	9.0000
(((	chr4:76580226-76580531(-)$1	1	40	43	9.0000
..)	chr11:129991408-129991621(+)$1	1	116	119	9.0000
(..	chr17:39977955-39978159(+)$1	1	69	72	9.0000
...	chr17:27449084-27449337(-)$1	1	68	71	9.0000
...	chr8:17613226-17613537(-)$1	1	1	4	9.0000
)))	chr11:130003462-130003686(+)$1	1	85	88	9.0000
(((	chr14:74764529-74764855(-)$1	1	42	45	9.0000
...	chr17:56082721-56082935(-)$1	1	14	17	9.0000
...	chr16:28884881-28885162(+)$1	1	25	28	9.0000
...	chr19:1271880-1272151(+)$1	1	1	4	9.0000
(..	chr2:27260914-27261183(+)$1	1	19	22	9.0000
(((	chr5:137498731-137499056(-)$1	1	47	50	9.0000
(((	chr6:31499022-31499250(-)$1	1	82	85	9.0000
...	chr9:139700572-139700879(+)$1	1	46	49	9.0000
(((	chr5:74100906-74101203(-)$1	1	16	19	9.0000
...	chr7:134632329-134632621(+)$1	1	41	44	9.0000
..)	chr19:5641650-5641909(+)$1	1	123	126	9.0000
)).	chr17:46052790-46053040(+)$1	1	92	95	9.0000
..)	chr9:139734995-139735263(+)$1	1	101	104	9.0000
)))	chr12:26633974-26634223(-)$1	1	12	15	9.0000
..)	chr3:42684729-42684986(+)$1	1	162	165	9.0000
...	chr16:24805866-24806141(+)$1	1	49	52	9.0000
((.	chr19:10791824-10792088(+)$1	1	20	23	9.0000
...	chr14:102549332-102549643(-)$1	1	42	45	9.0000
...	chr12:114403897-114404167(-)$1	1	74	77	9.0000
...	chr7:73010433-73010659(-)$1	1	62	65	9.0000
)))	chr10:45465512-45465773(+)$1	1	129	132	9.0000
...	chr6:31936419-31936671(+)$1	1	17	20	9.0000
((.	chr9:95022332-95022569(-)$1	1	77	80	9.0000
...	chr16:69687038-69687327(+)$1	1	99	102	9.0000
))(	chr2:61406188-61406406(+)$1	1	29	32	9.0000
(((	chr19:5626318-5626600(+)$1	1	41	44	9.0000
..)	chr5:74109564-74109836(-)$1	1	58	61	9.0000
)..	chr2:216981281-216981543(+)$1	1	30	33	9.0000
(((	chr14:39748446-39748658(+)$1	1	33	36	9.0000
(((	chr17:7125900-7126160(+)$1	1	14	17	9.0000
...	chr2:61406168-61406387(+)$1	1	16	19	9.0000
(((	chr6:155578818-155579074(-)$1	1	0	3	9.0000
(((	chr3:142741240-142741587(+)$1	1	38	41	9.0000
((.	chr12:76444236-76444452(-)$1	1	31	34	9.0000
(((	chr10:7791237-7791475(+)$1	1	75	78	9.0000
...	chr14:24606629-24606841(+)$1	1	20	23	9.0000
(((	chr14:102549301-102549525(-)$1	1	2	5	9.0000
(((	chr9:139700433-139700674(+)$1	1	18	21	9.0000
...	chr12:112460231-112460520(+)$1	1	11	14	9.0000
((.	chr2:61408354-61408567(+)$1	1	75	78	9.0000
...	chr2:128051083-128051377(-)$1	1	9	12	9.0000
)))	chr1:6257695-6257917(-)$1	1	63	66	9.0000
)).	chr9:100777598-100777866(+)$1	1	52	55	9.0000
)))	chr17:57812605-57812922(+)$1	1	33	36	9.0000
(..	chr1:1326580-1326827(-)$1	1	23	26	9.0000
)).	chr2:131883222-131883491(+)$1	1	18	21	9.0000
)))	chr11:129997622-129997833(+)$1	1	43	46	9.0000
..)	chr9:107651284-107651541(-)$1	1	80	83	9.0000
...	chr3:156867969-156868252(-)$1	1	33	36	9.0000
(..	chr14:35465790-35466084(+)$1	1	13	16	9.0000
.))	chr5:179048137-179048374(-)$1	1	68	71	9.0000
((.	chr14:50246903-50247135(+)$1	1	26	29	9.0000
...	chr9:117054288-117054532(+)$1	1	47	50	9.0000
(((	chr2:28974854-28975152(+)$1	1	2	5	9.0000
)))	chr17:7126024-7126264(+)$1	1	42	45	9.0000
...	chr3:142761862-142762190(+)$1	1	16	19	9.0000
)))	chr20:60715823-60716053(-)$1	1	66	69	9.0000
...	chr1:153634713-153634987(-)$1	1	5	8	9.0000
(..	chr14:24607846-24608101(+)$1	1	39	42	9.0000
(..	chr9:134334535-134334808(+)$1	1	15	18	9.0000
((.	chr8:67974001-67974392(-)$1	1	97	100	9.0000
((.	chr17:27413353-27413623(-)$1	1	40	43	9.0000
)))	chr7:132959636-132959969(+)$1	1	125	128	9.0000
...	chr11:118888062-118888314(-)$1	1	3	6	9.0000
...	chr14:24105670-24105880(+)$1	1	24	27	9.0000
.((	chr5:55251811-55252160(-)$1	1	24	27	9.0000
(((	chr6:52129327-52129555(-)$1	1	11	14	9.0000
...	chr3:184039749-184039990(+)$1	1	0	3	9.0000

#PSSM
G : 0.93	g : 0.06	
A : 0.93	a : 0.06	
A : 0.93	a : 0.06	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF014MZO_POLR2G_transcript_m1_run1.nuc.txt

#NT
aacuccugaccucgcgauccgcccaccucggccacccaaagugcugggauuacaggcgugagccacggcgcccggcc	chr7:918435-918722(+)$1	287	3	80	145.5833
cuccugaccucaagugaucugccugccuuggccucccaaagugcuaggauuacaggugugagccaccgugccuggcc	chr16:68144122-68144372(+)$1	250	8	85	144.7500
aacuccugaccuugugagcuacccaccuuggccucccaaagugcugggauuacaggcgugagccaccgugccuggcG	chr1:2190194-2190447(+)$1	253	14	91	143.5000
cuccuggccucaagugauccacccaccucggccucugaaagugcugggauuacaggcgugagccaccgcgcucggcc	chr2:236459635-236459893(+)$1	258	5	82	144.7499
cucuugcguucaaaugauucucaugccucagccucccgaguagcugggauuauaggcaugcgccacuacaccuggcu	chr12:112027418-112027665(-)$1	247	160	237	110.9999
aacuccugaccucgugauccaccugccuuggccucccaaagugcugggauuacaggcgugagccaucaugcccagcc	chr20:34325012-34325253(-)$1	241	145	222	144.7499
cucccgaccucaggugaugcacccgccucagccucccgaagugcugggaugacaggcgugagccaccgcgcccggcA	chr16:89586011-89586265(+)$1	254	1	78	146.8333
cuccugaccucaggugauccgccugccacagucucccaaagugcuggggucccagucaugagccaccgagcccagAC	chr17:72761901-72762201(+)$1	300	12	89	119.7499
aacuccugaccucgugauccguccgccucagccucccaaagcacugggauuacaggcgugagccaccgugacuggcU	chr21:47567392-47567659(-)$1	267	12	89	138.9166
cucccgaccucaggugaucugcccgccuuggccucccaaagugcugggauuacgggcgggagccacugugccuggcc	chr16:89460571-89460864(-)$1	293	33	110	145.1666
aucuccugaccucaugauccacccgccucggccucccaaagugcugggauuacaggcgugagccacugcgcccagcc	chr2:11423267-11423495(-)$1	228	14	91	151.4166

#otherMatches

#Struct PSSM
33eeeee666666dddd22ccc:::::::JJJJJJJJJJ:hhhhhhhh%%%%%%cccmmmmccc666666hhhhhhh	chr6:7118264-7118535(+)$1	271	177	254	111.4166
:::::::::DDDDLLLDDDD{EEEEEffffff[bbnnnnnbbffffffBBKKHHHHHHHH:::ccc[ddddccceee	chr7:918435-918722(+)$1	287	3	80	145.5833
qqqqqqqqeeeeeggggggg####bbcccbbmmmmbb]ccc]bb22ggggggg:FFFFFFPPPPPPPFFFFFFCCC{	chr16:68144122-68144372(+)$1	250	8	85	144.7500
BCCC{JJJJJJJJJJ:::::::IIIIIIIII::eeeeeooooooeeeee::::==========!!ddddnnnnnddd	chr1:2190194-2190447(+)$1	253	14	91	143.5000
:EEEEEEEEEELLLFFFFFF{EEEEEffffffbbnnnnnbb]ffffff::::::ccc[eeeeeooooooeeeeeccc	chr2:236459635-236459893(+)$1	258	5	82	144.7499
cffffff::::::ddddllldddddddd$$$$$eeeeeooooooeeeee4444dddd:FFFFFF}DDDD}EEEEE::	chr12:112027418-112027665(-)$1	247	160	237	110.9999
cvvvvvvvvvvvvvccc333ccc]ccc]eeeeeeeeeeooooooeeeee:::::gggggggmmmmggggggg::EEE	chr20:34325012-34325253(-)$1	241	145	222	144.7499
:::BB{BB{FFFFFFOOOOOOEEEEEffffffbbnnnnnbb]ffffff::::::cccmmmmcccEEEEE{CCCJJJJ	chr16:89586011-89586265(+)$1	254	1	78	146.8333
sssssdddd:fffffflllffffff::::::::eeeeeooooooeeeeeFFFFFF::::ggggggg!!a[=======	chr17:72761901-72762201(+)$1	300	12	89	119.7499
sssssssdddd::CCC{CCCcccbb[ddddccceeeeeooooooeeeee55555ccc]dddd4444bb]ccc:cccf	chr21:47567392-47567659(-)$1	267	12	89	138.9166
ffffff[ccc"""ggggggg"""ccc[ddddmmmmdddd]ccc333gggggggcccffffff22dddd]a]ffffff	chr16:89460571-89460864(-)$1	293	33	110	145.1666
sssssssdddd::::::::::::eeeee[a"""eeeeeooooooeeeee333aeeeee:::dddd[eeeeegggggg	chr2:11423267-11423495(-)$1	228	14	91	151.4166

#DB
..)))))......))))..))).......)))))))))).((((((((......(((....)))......)))))))	chr6:7118264-7118535(+)$1	1	177	254	111.4166
.........((((...((((.(((((((((((.((.....))))))))((..((((((((...(((.((((((((((	chr7:918435-918722(+)$1	1	3	80	145.5833
........)))))(((((((....(((((((....)).))).))..))))))).((((((.......(((((((((.	chr16:68144122-68144372(+)$1	1	8	85	144.7500
((((.((((((((((.......(((((((((..(((((......)))))....((((((((((..((((.....)))	chr1:2190194-2190447(+)$1	1	14	91	143.5000
.((((((((((...((((((.(((((((((((((.....)).))))))......(((.(((((......))))))))	chr2:236459635-236459893(+)$1	1	5	82	144.7499
)))))))......((((...))))((((.....(((((......)))))....)))).)))))).)))).)))))..	chr12:112027418-112027665(-)$1	1	160	237	110.9999
(.............)))...))).))).)))))(((((......))))).....(((((((....)))))))..)))	chr20:34325012-34325253(-)$1	1	145	222	144.7499
...((.((.((((((......(((((((((((((.....)).))))))......(((....)))(((((.(((((((	chr16:89586011-89586265(+)$1	1	1	78	146.8333
.....)))).((((((...))))))........(((((......)))))((((((....(((((((..(.(((((((	chr17:72761901-72762201(+)$1	1	12	89	119.7499
.......))))..(((.((((((((.((((((((((((......))))).....))).))))....)).))).((((	chr21:47567392-47567659(-)$1	1	12	89	138.9166
((((((.(((...(((((((...(((.((((....)))).)))...))))))))))))))))..)))).).))))))	chr16:89460571-89460864(-)$1	1	33	110	145.1666
.......))))............(((((.(...(((((......)))))...))))))...((((.(((((((((((	chr2:11423267-11423495(-)$1	1	14	91	151.4166

#PSSM
a : 0.49	c : 0.49	
u : 0.66	a : 0.33	
c : 1.00	
u : 0.58	c : 0.41	
c : 0.58	u : 0.41	
g : 0.58	c : 0.41	
u : 0.41	a : 0.33	g : 0.16	c : 0.08	
g : 0.49	c : 0.41	a : 0.08	
a : 0.41	c : 0.41	u : 0.16	
u : 0.58	c : 0.41	
c : 1.00	
a : 0.58	u : 0.41	
a : 0.33	c : 0.33	g : 0.25	u : 0.08	
g : 0.83	a : 0.16	
u : 0.83	c : 0.16	
g : 1.00	
a : 1.00	
u : 0.91	g : 0.08	
c : 0.75	u : 0.16	g : 0.08	
c : 0.75	u : 0.25	
g : 0.41	a : 0.41	u : 0.16	
c : 0.91	u : 0.08	
c : 0.91	a : 0.08	
c : 0.66	u : 0.33	
g : 0.66	a : 0.33	
c : 1.00	
c : 1.00	
u : 0.91	a : 0.08	
c : 0.66	u : 0.33	
g : 0.58	a : 0.41	
g : 1.00	
c : 0.91	u : 0.08	
c : 1.00	
u : 0.91	a : 0.08	
c : 1.00	
c : 0.91	u : 0.08	
c : 0.83	u : 0.08	g : 0.08	
a : 0.75	g : 0.25	
a : 1.00	
a : 0.83	g : 0.16	
g : 0.83	u : 0.16	
u : 0.75	a : 0.16	c : 0.08	
g : 0.91	a : 0.08	
c : 1.00	
u : 1.00	
g : 0.91	a : 0.08	
g : 1.00	
g : 1.00	
a : 0.91	g : 0.08	
u : 1.00	
u : 0.83	g : 0.08	c : 0.08	
a : 0.91	c : 0.08	
c : 0.91	u : 0.08	
a : 0.91	g : 0.08	
g : 1.00	
g : 0.91	u : 0.08	
c : 0.91	u : 0.08	
g : 0.83	a : 0.16	
u : 0.83	c : 0.08	g : 0.08	
g : 0.91	a : 0.08	
a : 0.83	u : 0.08	c : 0.08	
g : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 0.91	u : 0.08	
c : 0.66	u : 0.25	g : 0.08	
g : 0.75	a : 0.25	
c : 0.49	u : 0.41	a : 0.08	
g : 0.83	a : 0.16	
c : 0.91	a : 0.08	
c : 0.91	u : 0.08	
u : 0.49	c : 0.49	
g : 0.75	a : 0.25	
g : 1.00	
c : 0.91	A : 0.08	
c : 0.49	u : 0.16	G : 0.08	A : 0.08	C : 0.08	U : 0.08	

#score	1647.833333333333
#seq	12
#width	77
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_UTR_m3_run2.nuc.txt

#NT
GAGUAUCUAUUUCUACAUAGUCAGCUACUUCUGAAACUGCAGCAGUGGCUUAGAAAGUCCAAUUCCAAAGCCAGACCAGAAGAUUCUAUCCCCCGCAGCGCUCUCCUUUGAGCAAGCCGAGCUCUCCUUGUUACCGUGUUCUGUCUGUGUCUUCAGGAGUCUCAUGGCCUGAACGACCACCUCGACCUGAUGCAGAGCCUUCUGAGGAGAGGCAACAGGAGGCAUUCUGUGGCCAGCCAAAAGGUACCCCGAUGGCCAAGCAAUUCCUCUGAACAAAAUGUAAAGCCAGCCAUGCAUUGUUAAUCAUCCAUCACUUCCCAUUUUAUGGAAUUGCUUUUAAAAUACAUU	chr15:101844556-101844910(-)$1	354	4	352	426.5000

#otherMatches

#Struct PSSM
ccc[dddd$$$$$ddddrrrrrrrrrddddddddccc::::::::::gggggggmmmmggggggg::::eeeee[cccmmmmccceeeeeEEEEE{CCCKKCCC:::ddddmmmmdddd::::FFFFFF:::::dddd[bbnnnnnbbdddddddd"""dddd$$$$$dddd####ggggggg[dddd[eeeee####cccdddd####cccmmmmccc333dddd4444ccc4444eeeee333ddddggggggg55555dddd7777777dddd333ddddFFFFFFCCCYYCCC}EEEEE:eeeee"""ccceeeeevvvvvvvvvvvvveeeee]ccc55555e	chr3:38294490-38294860(+)$1	370	0	348	426.5000
eeee$$$$$ffffff&&&&&&&ggggggg[cccooooooccc]gggggggffffff55555eeeee:::::CCC{CCCKKGGGGGGGOOOOOOEEEEE:ddddoooooodddd::bb[ddddxxxxxxxxxxxxxxxdddd]bbEEEEE______GGGGGGGYYCCC}CCC::cccnnnnnccc:::::::eeeeehhhhhhhh!!annnnna22hhhhhhhh22eeeeeCCC::dddd"""bbmmmmbb22dddd:==========&&&&&&&ffffff!!ccc%%%%%%ccc[ccclllcccccc666666ccc22ffffff22==========::::::::::::	chr15:101844556-101844910(-)$1	354	4	352	426.5000

#DB
(((.((((.....((((.........)))))))))))..........(((((((....)))))))....(((((.(((....))))))))(((((.(((..(((...((((....))))....((((((.....((((.((.....))))))((((...((((.....((((....(((((((.((((.(((((....(((((((....(((....)))...))))....)))....)))))...))))))))))).....)))).......))))...)))))))))))))..))).))))).(((((...((((((((.............))))).))).....)	chr3:38294490-38294860(+)$1	1	0	348	426.5000
((((.....((((((.......(((((((.(((......))).))))))))))))).....))))).....(((.(((..(((((((......(((((.((((......))))..((.((((...............)))).)))))))......)))))))..))).)))..(((.....))).......(((((((((((((..(.....)..))))))))..))))))))..((((...((....))..)))).((((((((((.......((((((..(((......(((.(((...))))))......)))..))))))..))))))))))............	chr15:101844556-101844910(-)$1	1	4	352	426.5000

#PSSM
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	

#score	853.0
#seq	2
#width	348
#escape	false
#onStep	14312
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_CDS_m2_run1.nuc.txt

#NT
CCCCUCCCC	chr12:7046127-7046343(+)$1	216	63	72	22.8461
CCCCUUCCC	chr19:42753358-42753593(-)$1	235	67	76	19.7692
CCCCGCCCC	chr6:31597318-31597561(+)$1	243	139	148	18.9230
CCCCACCCC	chr13:100153727-100154026(+)$1	299	71	80	18.6153
UCCCUCCCC	chr19:14675540-14675771(+)$1	231	152	161	18.4615
CCCCUUCCC	chr9:139849641-139849986(+)$1	345	28	37	19.7692
CCCCUGCCC	chr2:242163381-242163626(+)$1	245	10	19	19.3846
CCCCUCCCC	chr19:15350698-15350934(-)$1	236	117	126	22.8461
CCCCUGCCC	chr2:74653337-74653605(-)$1	268	71	80	19.3846
CCCCUUCCC	chr1:214171186-214171512(+)$1	326	137	146	19.7692
CCUCUCCCC	chr16:30734820-30735147(+)$1	327	183	192	18.3846
CCCCGCCCC	chr19:7712546-7712856(+)$1	310	157	166	18.9230
CCACUCCCC	chr17:36891460-36891702(-)$1	242	90	99	18.4615
CCCCACCCC	chr12:57919825-57920043(+)$1	218	179	188	18.6153
CCCCUCCCC	chr12:7046143-7046376(+)$1	233	47	56	22.8461
CCCCUUCCC	chr17:73895559-73895823(-)$1	264	125	134	19.7692
ccacucccc	chr6:31502954-31503233(-)$1	279	117	126	18.4615
CCCAUCCCC	chr3:47451756-47452013(+)$1	257	199	208	18.9999
ccccucccg	chr3:184097922-184098242(+)$1	320	67	76	18.1538
CCCCUGCCC	chr3:184035008-184035255(+)$1	247	161	170	19.3846
ccccucccc	chr19:7585494-7585753(+)$1	259	65	74	22.8461
ccccucccc	chr7:116608287-116608586(+)$1	299	3	12	22.8461
CCCCUUCCC	chrX:47425949-47426243(+)$1	294	121	130	19.7692
CCCAUCCCC	chr13:39586853-39587142(-)$1	289	234	243	18.9999
CCCCUUCCC	chr6:88411278-88411604(-)$1	326	127	136	19.7692
ACCCUCCCC	chr7:73011775-73012035(-)$1	260	113	122	18.6923
GCCCUCCCC	chr3:48461242-48461509(-)$1	267	88	97	18.5384
CCCUUCCCC	chr2:39213056-39213323(-)$1	267	112	121	18.9230
CCCCUCCCC	chr2:71159703-71160015(+)$1	312	175	184	22.8461
CCCCGCCCC	chr3:185797642-185797919(-)$1	277	182	191	18.9230
CCCAUCCCC	chr3:9798758-9799054(+)$1	296	139	148	18.9999
CCCAUCCCC	chr6:107955513-107955805(+)$1	292	140	149	18.9999
CACCUCCCC	chr19:50818146-50818401(-)$1	255	136	145	18.1538
CCCCUCCCA	chr3:49568966-49569228(+)$1	262	230	239	18.1538
CCACUCCCC	chr12:122260777-122261075(+)$1	298	52	61	18.4615
CCCGUCCCC	chr1:245133893-245134135(+)$1	242	16	25	18.6923
CCCCUCCCC	chr17:79826573-79826809(-)$1	236	125	134	22.8461
ccccuccuc	chr16:30748812-30749072(+)$1	260	47	56	18.1538
CCCCUCCUC	chr2:135711910-135712153(+)$1	243	114	123	18.1538
CCUCUCCCC	chr12:6442330-6442597(-)$1	267	92	101	18.3846
CCCCUCCCU	chr6:33166999-33167244(-)$1	245	39	48	18.1538
CCCCUACCC	chr2:220439950-220440207(+)$1	257	128	137	19.3076
CCCCUCCCC	chr12:57919475-57919730(+)$1	255	81	90	22.8461
CCCUUCCCC	chr20:401381-401642(+)$1	261	61	70	18.9230
acccucccc	chr6:158093576-158093864(+)$1	288	84	93	18.6923
CCCAUCCCC	chr10:75568007-75568267(-)$1	260	72	81	18.9999
CCCCGCCCC	chr1:155221428-155221710(-)$1	282	66	75	18.9230
CCCCUCCCC	chr16:28847661-28847903(+)$1	242	86	95	22.8461
CCCCUUCCC	chr1:151666787-151667081(+)$1	294	117	126	19.7692
CCCCUGCCC	chr3:184035138-184035385(+)$1	247	31	40	19.3846
ccccgcccc	chr22:42263047-42263288(+)$1	241	95	104	18.9230
CCCCUCCCC	chr5:137803420-137803725(+)$1	305	187	196	22.8461
CUCCUCCCC	chr12:100592875-100593180(-)$1	305	44	53	18.2307
CCCUUCCCC	chr5:31526710-31526953(-)$1	243	151	160	18.9230
CCCCUUCCC	chr3:47451500-47451768(+)$1	268	109	118	19.7692
cccuucccc	chr10:102283766-102284085(-)$1	319	132	141	18.9230
CUCCUCCCC	chr6:110423191-110423458(-)$1	267	185	194	18.2307
ACCCUCCCC	chr7:73011733-73011947(-)$1	214	25	34	18.6923
ACCCUCCCC	chr16:29918020-29918302(-)$1	282	116	125	18.6923
CCCCUCCCC	chr3:48461422-48461694(-)$1	272	72	81	22.8461
CCCCUUCCC	chr19:42753393-42753651(-)$1	258	125	134	19.7692
CCCCUACCC	chr8:145065621-145065865(+)$1	244	15	24	19.3076
ccccuaccc	chr1:171526792-171527014(+)$1	222	208	217	19.3076
GCCCUCCCC	chr16:70708315-70708645(-)$1	330	20	29	18.5384

#otherMatches

#Struct PSSM
####ccc[c	chr1:156693886-156694181(-)$1	295	260	269	18.9230
^^^^^^^^^	chr12:7046127-7046343(+)$1	216	63	72	22.8461
000000000	chr19:42753358-42753593(-)$1	235	67	76	19.7692
::::ccc[d	chr6:31597318-31597561(+)$1	243	139	148	18.9230
:::::::::	chr13:100153727-100154026(+)$1	299	71	80	18.6153
zzzzzzzzz	chr19:14675540-14675771(+)$1	231	152	161	18.4615
HHH::::::	chr9:139849641-139849986(+)$1	345	28	37	19.7692
F::::dddd	chr2:242163381-242163626(+)$1	245	10	19	19.3846
@@@@@@@@@	chr19:15350698-15350934(-)$1	236	117	126	22.8461
:::::JJJJ	chr2:74653337-74653605(-)$1	268	71	80	19.3846
^^^^^^^^^	chr1:214171186-214171512(+)$1	326	137	146	19.7692
:::::::::	chr16:30734820-30735147(+)$1	327	183	192	18.3846
c333bb888	chr19:7712546-7712856(+)$1	310	157	166	18.9230
:::bbeeee	chr17:36891460-36891702(-)$1	242	90	99	18.4615
::cccmmmm	chr12:57919825-57920043(+)$1	218	179	188	18.6153
:::::::::	chr12:7046143-7046376(+)$1	233	47	56	22.8461
EAYYDDDD:	chr17:73895559-73895823(-)$1	264	125	134	19.7692
::::::::c	chr6:31502954-31503233(-)$1	279	117	126	18.4615
ttttttttt	chr3:47451756-47452013(+)$1	257	199	208	18.9999
qqqqqqqqd	chr3:184097922-184098242(+)$1	320	67	76	18.1538
b22dddd]b	chr3:184035008-184035255(+)$1	247	161	170	19.3846
^^^^^^^ee	chr19:7585494-7585753(+)$1	259	65	74	22.8461
:::::::::	chr7:116608287-116608586(+)$1	299	3	12	22.8461
CCCBB{EEE	chrX:47425949-47426243(+)$1	294	121	130	19.7692
EE:::::::	chr13:39586853-39587142(-)$1	289	234	243	18.9999
:::::::::	chr6:88411278-88411604(-)$1	326	127	136	19.7692
zzzzzzzzz	chr7:73011775-73012035(-)$1	260	113	122	18.6923
adddd6666	chr3:48461242-48461509(-)$1	267	88	97	18.5384
^^^^^^^^^	chr2:39213056-39213323(-)$1	267	112	121	18.9230
:::::::::	chr2:71159703-71160015(+)$1	312	175	184	22.8461
dllldddd]	chr3:185797642-185797919(-)$1	277	182	191	18.9230
MMMMIIIII	chr3:9798758-9799054(+)$1	296	139	148	18.9999
e::::::::	chr6:107955513-107955805(+)$1	292	140	149	18.9999
dd:::::::	chr19:50818146-50818401(-)$1	255	136	145	18.1538
:::::::::	chr3:49568966-49569228(+)$1	262	230	239	18.1538
ctttttttt	chr12:122260777-122261075(+)$1	298	52	61	18.4615
:CCCMMMMJ	chr1:245133893-245134135(+)$1	242	16	25	18.6923
b]a]ccccc	chr17:79826573-79826809(-)$1	236	125	134	22.8461
WWWWWWWWW	chr16:30748812-30749072(+)$1	260	47	56	18.1538
::::::::c	chr2:135711910-135712153(+)$1	243	114	123	18.1538
CCC::::ee	chr12:6442330-6442597(-)$1	267	92	101	18.3846
e99999999	chr6:33166999-33167244(-)$1	245	39	48	18.1538
:::::::JJ	chr2:220439950-220440207(+)$1	257	128	137	19.3076
HHHHHHHHK	chr12:57919475-57919730(+)$1	255	81	90	22.8461
:::::::::	chr20:401381-401642(+)$1	261	61	70	18.9230
yyyyyyyyy	chr6:158093576-158093864(+)$1	288	84	93	18.6923
grrrrrrrr	chr10:75568007-75568267(-)$1	260	72	81	18.9999
eee:EEEEE	chr1:155221428-155221710(-)$1	282	66	75	18.9230
hhhh'''''	chr16:28847661-28847903(+)$1	242	86	95	22.8461
:::::::::	chr1:151666787-151667081(+)$1	294	117	126	19.7692
oa]ddddab	chr3:184035138-184035385(+)$1	247	31	40	19.3846
ddd:bbnnn	chr22:42263047-42263288(+)$1	241	95	104	18.9230
>>>>>>>>>	chr5:137803420-137803725(+)$1	305	187	196	22.8461
:::::::::	chr12:100592875-100593180(-)$1	305	44	53	18.2307
F::::::::	chr5:31526710-31526953(-)$1	243	151	160	18.9230
:::::::::	chr3:47451500-47451768(+)$1	268	109	118	19.7692
2bb]ddddc	chr10:102283766-102284085(-)$1	319	132	141	18.9230
:::::::::	chr6:110423191-110423458(-)$1	267	185	194	18.2307
+++++++++	chr7:73011733-73011947(-)$1	214	25	34	18.6923
++++dddd"	chr16:29918020-29918302(-)$1	282	116	125	18.6923
KKCCC{DDD	chr3:48461422-48461694(-)$1	272	72	81	22.8461
000000000	chr19:42753393-42753651(-)$1	258	125	134	19.7692
eee::::bb	chr8:145065621-145065865(+)$1	244	15	24	19.3076
c::::::::	chr1:171526792-171527014(+)$1	222	208	217	19.3076
DDD::::::	chr16:70708315-70708645(-)$1	330	20	29	18.5384

#DB
....(((.(	chr1:156693886-156694181(-)$1	1	260	269	18.9230
.........	chr12:7046127-7046343(+)$1	1	63	72	22.8461
.........	chr19:42753358-42753593(-)$1	1	67	76	19.7692
....(((.(	chr6:31597318-31597561(+)$1	1	139	148	18.9230
.........	chr13:100153727-100154026(+)$1	1	71	80	18.6153
.........	chr19:14675540-14675771(+)$1	1	152	161	18.4615
(((......	chr9:139849641-139849986(+)$1	1	28	37	19.7692
(....((((	chr2:242163381-242163626(+)$1	1	10	19	19.3846
.........	chr19:15350698-15350934(-)$1	1	117	126	22.8461
.....((((	chr2:74653337-74653605(-)$1	1	71	80	19.3846
.........	chr1:214171186-214171512(+)$1	1	137	146	19.7692
.........	chr16:30734820-30735147(+)$1	1	183	192	18.3846
)...))...	chr19:7712546-7712856(+)$1	1	157	166	18.9230
...((((((	chr17:36891460-36891702(-)$1	1	90	99	18.4615
..(((....	chr12:57919825-57920043(+)$1	1	179	188	18.6153
.........	chr12:7046143-7046376(+)$1	1	47	56	22.8461
))..)))).	chr17:73895559-73895823(-)$1	1	125	134	19.7692
........(	chr6:31502954-31503233(-)$1	1	117	126	18.4615
.........	chr3:47451756-47452013(+)$1	1	199	208	18.9999
........)	chr3:184097922-184098242(+)$1	1	67	76	18.1538
)..)))).)	chr3:184035008-184035255(+)$1	1	161	170	19.3846
.......))	chr19:7585494-7585753(+)$1	1	65	74	22.8461
.........	chr7:116608287-116608586(+)$1	1	3	12	22.8461
(((((.(((	chrX:47425949-47426243(+)$1	1	121	130	19.7692
)).......	chr13:39586853-39587142(-)$1	1	234	243	18.9999
.........	chr6:88411278-88411604(-)$1	1	127	136	19.7692
.........	chr7:73011775-73012035(-)$1	1	113	122	18.6923
)))))....	chr3:48461242-48461509(-)$1	1	88	97	18.5384
.........	chr2:39213056-39213323(-)$1	1	112	121	18.9230
.........	chr2:71159703-71160015(+)$1	1	175	184	22.8461
(...)))).	chr3:185797642-185797919(-)$1	1	182	191	18.9230
....(((((	chr3:9798758-9799054(+)$1	1	139	148	18.9999
)........	chr6:107955513-107955805(+)$1	1	140	149	18.9999
)).......	chr19:50818146-50818401(-)$1	1	136	145	18.1538
.........	chr3:49568966-49569228(+)$1	1	230	239	18.1538
(........	chr12:122260777-122261075(+)$1	1	52	61	18.4615
.(((....(	chr1:245133893-245134135(+)$1	1	16	25	18.6923
).).)))))	chr17:79826573-79826809(-)$1	1	125	134	22.8461
.........	chr16:30748812-30749072(+)$1	1	47	56	18.1538
........(	chr2:135711910-135712153(+)$1	1	114	123	18.1538
(((....((	chr12:6442330-6442597(-)$1	1	92	101	18.3846
)........	chr6:33166999-33167244(-)$1	1	39	48	18.1538
.......))	chr2:220439950-220440207(+)$1	1	128	137	19.3076
((((((((.	chr12:57919475-57919730(+)$1	1	81	90	22.8461
.........	chr20:401381-401642(+)$1	1	61	70	18.9230
.........	chr6:158093576-158093864(+)$1	1	84	93	18.6923
(........	chr10:75568007-75568267(-)$1	1	72	81	18.9999
))).(((((	chr1:155221428-155221710(-)$1	1	66	75	18.9230
((((.....	chr16:28847661-28847903(+)$1	1	86	95	22.8461
.........	chr1:151666787-151667081(+)$1	1	117	126	19.7692
.).))))))	chr3:184035138-184035385(+)$1	1	31	40	19.3846
))).((...	chr22:42263047-42263288(+)$1	1	95	104	18.9230
.........	chr5:137803420-137803725(+)$1	1	187	196	22.8461
.........	chr12:100592875-100593180(-)$1	1	44	53	18.2307
)........	chr5:31526710-31526953(-)$1	1	151	160	18.9230
.........	chr3:47451500-47451768(+)$1	1	109	118	19.7692
.)).)))))	chr10:102283766-102284085(-)$1	1	132	141	18.9230
.........	chr6:110423191-110423458(-)$1	1	185	194	18.2307
.........	chr7:73011733-73011947(-)$1	1	25	34	18.6923
....((((.	chr16:29918020-29918302(-)$1	1	116	125	18.6923
..(((.(((	chr3:48461422-48461694(-)$1	1	72	81	22.8461
.........	chr19:42753393-42753651(-)$1	1	125	134	19.7692
)))....((	chr8:145065621-145065865(+)$1	1	15	24	19.3076
)........	chr1:171526792-171527014(+)$1	1	208	217	19.3076
(((......	chr16:70708315-70708645(-)$1	1	20	29	18.5384

#PSSM
C : 0.76	c : 0.12	A : 0.04	G : 0.03	U : 0.01	a : 0.01	
C : 0.81	c : 0.13	U : 0.03	A : 0.01	
C : 0.79	c : 0.12	U : 0.03	A : 0.03	a : 0.01	
C : 0.72	c : 0.12	A : 0.07	U : 0.04	G : 0.01	u : 0.01	
U : 0.75	u : 0.12	G : 0.07	A : 0.03	g : 0.01	
C : 0.63	U : 0.13	c : 0.12	G : 0.06	A : 0.03	a : 0.01	
C : 0.86	c : 0.13	
C : 0.84	c : 0.12	u : 0.01	U : 0.01	
C : 0.83	c : 0.12	g : 0.01	A : 0.01	U : 0.01	

#score	1272.6923076923065
#seq	65
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_UTR_m3_run2.nuc.txt

#NT
CCCGCCG	chr22:20104910-20105262(+)$1	352	92	99	13.0769
CUCGCCC	chr9:35072246-35072534(-)$1	288	75	82	13.8461
CCCGCCC	chr15:40331192-40331460(-)$1	268	66	73	17.4615
UCCGCCC	chr17:56429328-56429653(-)$1	325	28	35	12.9230
CCCGCCC	chr19:49999594-49999824(+)$1	230	4	11	17.4615
GCCGCCC	chr12:111180494-111180746(-)$1	252	10	17	12.9230
CCCUCCC	chr16:18801529-18801757(-)$1	228	91	98	13.1538
cccgccc	chr12:131356521-131356773(+)$1	252	13	20	17.4615
CCUGCCC	chr9:128003305-128003571(-)$1	266	36	43	13.4615
CCCGCCC	chr5:140026967-140027302(-)$1	335	25	32	17.4615
CCCGCCU	chr6:31703977-31704257(-)$1	280	110	117	13.0769
CGCGCCC	chr1:36106924-36107221(-)$1	297	15	22	14.2307
CUCGCCC	chr6:10723323-10723574(+)$1	251	39	46	13.8461
CGCGCCC	chr17:8286373-8286608(-)$1	235	19	26	14.2307
CCAGCCC	chr22:21998367-21998637(+)$1	270	259	266	13.4615
CCCGGCC	chr1:46049624-46049885(+)$1	261	72	79	13.2307
CCCGCCC	chr12:49524980-49525274(-)$1	294	41	48	17.4615
CACGCCC	chr20:57607210-57607495(-)$1	285	72	79	13.9230
CACGCCC	chr17:26903718-26903958(-)$1	240	0	7	13.9230
CCCACCC	chr8:56986931-56987163(-)$1	232	87	94	12.9230
gccgccc	chr1:197115494-197115795(-)$1	301	125	132	12.9230
CCUGCCC	chr11:85779915-85780219(-)$1	304	125	132	13.4615
CCCGCCA	chr6:88411577-88411847(-)$1	270	210	217	13.0769
UCCGCCC	chr8:125551267-125551581(+)$1	314	71	78	12.9230
CCCGCGC	chr22:24236485-24236756(+)$1	271	207	214	12.6153
CCCGCCC	chr19:572492-572804(+)$1	312	20	27	17.4615
CCCUCCC	chr16:202762-203043(+)$1	281	10	17	13.1538
CGCGCCC	chr11:75110463-75110722(+)$1	259	61	68	14.2307
CCCGCCC	chr12:120875820-120876105(+)$1	285	155	162	17.4615
ccggccc	chr3:129034831-129035064(-)$1	233	105	112	13.2307
CCCGCCC	chr2:98262431-98262750(+)$1	319	49	56	17.4615
CCCGCCU	chr1:154947066-154947318(+)$1	252	16	23	13.0769
CCUGCCC	chr19:36142034-36142264(+)$1	230	15	22	13.4615
CGCGCCC	chr6:27860776-27861050(-)$1	274	40	47	14.2307
CCCGCCG	chr11:64084824-64085089(-)$1	265	172	179	13.0769
CCCGCCC	chr6:31704109-31704393(-)$1	284	25	32	17.4615
CCUGCCC	chr22:38902134-38902410(-)$1	276	167	174	13.4615
CGCGCCC	chr6:27114793-27115052(+)$1	259	45	52	14.2307
CCCGGCC	chr4:103748513-103748787(-)$1	274	192	199	13.2307
CCCGCCC	chr12:56510315-56510532(+)$1	217	13	20	17.4615
CCCGGCC	chr16:56642404-56642656(+)$1	252	17	24	13.2307
CGCGCCC	chr6:27775856-27776113(+)$1	257	47	54	14.2307
CCAGCCC	chr17:16284307-16284595(+)$1	288	85	92	13.4615
CCAGCCC	chr7:128379315-128379579(+)$1	264	187	194	13.4615
CCCGCCA	chr22:24951875-24952129(+)$1	254	85	92	13.0769
CCCGCCC	chr11:65625465-65625753(-)$1	288	44	51	17.4615
CCCGCCC	chr15:44580970-44581218(+)$1	248	101	108	17.4615
CCCGCCC	chr11:8704240-8704464(+)$1	224	8	15	17.4615
CCCUCCC	chr14:21737411-21737684(-)$1	273	214	221	13.1538
CCCGCCC	chr19:59055725-59056004(+)$1	279	13	20	17.4615
CCCGACC	chr20:2451244-2451532(-)$1	288	73	80	12.9999
CCCGCCC	chr8:110346477-110346751(+)$1	274	67	74	17.4615
CGCGCCC	chrX:152953455-152953804(+)$1	349	22	29	14.2307
CCAGCCC	chr19:49999624-49999828(+)$1	204	18	25	13.4615
CCCGCCC	chr15:78832687-78832980(+)$1	293	59	66	17.4615
cgcgccc	chr9:113018606-113018926(-)$1	320	73	80	14.2307
CUCGCCC	chr15:66795738-66795962(-)$1	224	102	109	13.8461
CACGCCC	chr17:26903758-26904015(-)$1	257	57	64	13.9230
CACGCCC	chr1:110950151-110950415(-)$1	264	82	89	13.9230
CCCGCCC	chr6:10747895-10748216(+)$1	321	27	34	17.4615
CCCGGCC	chr14:69864855-69865148(-)$1	293	237	244	13.2307
CCCGCCC	chr6:30688036-30688314(+)$1	278	46	53	17.4615
CCCGCCC	chr6:27100350-27100637(-)$1	287	132	139	17.4615
CCCUCCC	chr15:45003618-45003913(+)$1	295	207	214	13.1538

#otherMatches

#Struct PSSM
CCCdddd	chr19:39109733-39109997(+)$1	264	105	112	12.9999
JJJJJJJ	chr22:20104910-20105262(+)$1	352	92	99	13.0769
cc22ccc	chr9:35072246-35072534(-)$1	288	75	82	13.8461
beeeee3	chr15:40331192-40331460(-)$1	268	66	73	17.4615
ggggggg	chr17:56429328-56429653(-)$1	325	28	35	12.9230
EEEEKKA	chr19:49999594-49999824(+)$1	230	4	11	17.4615
DDD{CCC	chr12:111180494-111180746(-)$1	252	10	17	12.9230
b####cc	chr16:18801529-18801757(-)$1	228	91	98	13.1538
II{EEEE	chr12:131356521-131356773(+)$1	252	13	20	17.4615
dd[bbnn	chr9:128003305-128003571(-)$1	266	36	43	13.4615
DDD::dd	chr5:140026967-140027302(-)$1	335	25	32	17.4615
c]a22ff	chr6:31703977-31704257(-)$1	280	110	117	13.0769
{BBIIII	chr1:36106924-36107221(-)$1	297	15	22	14.2307
f####dd	chr6:10723323-10723574(+)$1	251	39	46	13.8461
DDDccc!	chr17:8286373-8286608(-)$1	235	19	26	14.2307
2bb]bbe	chr22:21998367-21998637(+)$1	270	259	266	13.4615
gg22ccc	chr1:46049624-46049885(+)$1	261	72	79	13.2307
22ccc22	chr12:49524980-49525274(-)$1	294	41	48	17.4615
b333a]i	chr20:57607210-57607495(-)$1	285	72	79	13.9230
DDDDKKG	chr17:26903718-26903958(-)$1	240	0	7	13.9230
ggggg:d	chr8:56986931-56987163(-)$1	232	87	94	12.9230
EEEEEEE	chr1:197115494-197115795(-)$1	301	125	132	12.9230
EEEKKHH	chr11:85779915-85780219(-)$1	304	125	132	13.4615
baeeeee	chr6:88411577-88411847(-)$1	270	210	217	13.0769
eeeee22	chr8:125551267-125551581(+)$1	314	71	78	12.9230
eeeeecc	chr22:24236485-24236756(+)$1	271	207	214	12.6153
JJJJJJJ	chr19:572492-572804(+)$1	312	20	27	17.4615
CC{BB{A	chr16:202762-203043(+)$1	281	10	17	13.1538
BB{DDDD	chr11:75110463-75110722(+)$1	259	61	68	14.2307
mmbbddd	chr12:120875820-120876105(+)$1	285	155	162	17.4615
fffccc]	chr3:129034831-129035064(-)$1	233	105	112	13.2307
"cccmmm	chr2:98262431-98262750(+)$1	319	49	56	17.4615
DDDffff	chr1:154947066-154947318(+)$1	252	16	23	13.0769
uuuuuuu	chr19:36142034-36142264(+)$1	230	15	22	13.4615
::EEEEE	chr6:27860776-27861050(-)$1	274	40	47	14.2307
~~~EEEE	chr11:64084824-64085089(-)$1	265	172	179	13.0769
iiiiiii	chr6:31704109-31704393(-)$1	284	25	32	17.4615
ccc]ddd	chr22:38902134-38902410(-)$1	276	167	174	13.4615
:ddddoo	chr6:27114793-27115052(+)$1	259	45	52	14.2307
ccc:HHH	chr4:103748513-103748787(-)$1	274	192	199	13.2307
ooodddd	chr12:56510315-56510532(+)$1	217	13	20	17.4615
G::====	chr16:56642404-56642656(+)$1	252	17	24	13.2307
NFFFFFF	chr6:27775856-27776113(+)$1	257	47	54	14.2307
GGGGGGG	chr17:16284307-16284595(+)$1	288	85	92	13.4615
f22cccb	chr7:128379315-128379579(+)$1	264	187	194	13.4615
hhhhhh:	chr22:24951875-24952129(+)$1	254	85	92	13.0769
dd:CCCL	chr11:65625465-65625753(-)$1	288	44	51	17.4615
ccc]ddd	chr15:44580970-44581218(+)$1	248	101	108	17.4615
OOOOOOF	chr11:8704240-8704464(+)$1	224	8	15	17.4615
eeecccg	chr14:21737411-21737684(-)$1	273	214	221	13.1538
HA{DDDD	chr19:59055725-59056004(+)$1	279	13	20	17.4615
dddd[cc	chr20:2451244-2451532(-)$1	288	73	80	12.9999
dd]ccc:	chr8:110346477-110346751(+)$1	274	67	74	17.4615
ddbb!!b	chrX:152953455-152953804(+)$1	349	22	29	14.2307
::HHHHH	chr19:49999624-49999828(+)$1	204	18	25	13.4615
$$$eeee	chr15:78832687-78832980(+)$1	293	59	66	17.4615
2gggggg	chr9:113018606-113018926(-)$1	320	73	80	14.2307
ddd[ccc	chr15:66795738-66795962(-)$1	224	102	109	13.8461
=======	chr17:26903758-26904015(-)$1	257	57	64	13.9230
D{EEEEE	chr1:110950151-110950415(-)$1	264	82	89	13.9230
{BBRRRR	chr6:10747895-10748216(+)$1	321	27	34	17.4615
ooccc]c	chr14:69864855-69865148(-)$1	293	237	244	13.2307
gggggHH	chr6:30688036-30688314(+)$1	278	46	53	17.4615
mmmbb::	chr6:27100350-27100637(-)$1	287	132	139	17.4615
:::::dd	chr15:45003618-45003913(+)$1	295	207	214	13.1538

#DB
(((((((	chr19:39109733-39109997(+)$1	1	105	112	12.9999
)))))))	chr22:20104910-20105262(+)$1	1	92	99	13.0769
))..)))	chr9:35072246-35072534(-)$1	1	75	82	13.8461
)))))).	chr15:40331192-40331460(-)$1	1	66	73	17.4615
)))))))	chr17:56429328-56429653(-)$1	1	28	35	12.9230
((((..(	chr19:49999594-49999824(+)$1	1	4	11	17.4615
(((.(((	chr12:111180494-111180746(-)$1	1	10	17	12.9230
(....((	chr16:18801529-18801757(-)$1	1	91	98	13.1538
((.((((	chr12:131356521-131356773(+)$1	1	13	20	17.4615
((.((..	chr9:128003305-128003571(-)$1	1	36	43	13.4615
(((..((	chr5:140026967-140027302(-)$1	1	25	32	17.4615
).)..))	chr6:31703977-31704257(-)$1	1	110	117	13.0769
.((((((	chr1:36106924-36107221(-)$1	1	15	22	14.2307
(....((	chr6:10723323-10723574(+)$1	1	39	46	13.8461
((((((.	chr17:8286373-8286608(-)$1	1	19	26	14.2307
.)).)))	chr22:21998367-21998637(+)$1	1	259	266	13.4615
))..)))	chr1:46049624-46049885(+)$1	1	72	79	13.2307
..)))..	chr12:49524980-49525274(-)$1	1	41	48	17.4615
)...).)	chr20:57607210-57607495(-)$1	1	72	79	13.9230
((((..(	chr17:26903718-26903958(-)$1	1	0	7	13.9230
))))).(	chr8:56986931-56987163(-)$1	1	87	94	12.9230
(((((((	chr1:197115494-197115795(-)$1	1	125	132	12.9230
(((..((	chr11:85779915-85780219(-)$1	1	125	132	13.4615
)))))))	chr6:88411577-88411847(-)$1	1	210	217	13.0769
)))))..	chr8:125551267-125551581(+)$1	1	71	78	12.9230
)))))))	chr22:24236485-24236756(+)$1	1	207	214	12.6153
(((((((	chr19:572492-572804(+)$1	1	20	27	17.4615
((.((.(	chr16:202762-203043(+)$1	1	10	17	13.1538
((.((((	chr11:75110463-75110722(+)$1	1	61	68	14.2307
..)))))	chr12:120875820-120876105(+)$1	1	155	162	17.4615
)))))).	chr3:129034831-129035064(-)$1	1	105	112	13.2307
.(((...	chr2:98262431-98262750(+)$1	1	49	56	17.4615
(((((((	chr1:154947066-154947318(+)$1	1	16	23	13.0769
.......	chr19:36142034-36142264(+)$1	1	15	22	13.4615
..(((((	chr6:27860776-27861050(-)$1	1	40	47	14.2307
...))))	chr11:64084824-64085089(-)$1	1	172	179	13.0769
(((((((	chr6:31704109-31704393(-)$1	1	25	32	17.4615
))).)))	chr22:38902134-38902410(-)$1	1	167	174	13.4615
.((((..	chr6:27114793-27115052(+)$1	1	45	52	14.2307
))).(((	chr4:103748513-103748787(-)$1	1	192	199	13.2307
...))))	chr12:56510315-56510532(+)$1	1	13	20	17.4615
(..((((	chr16:56642404-56642656(+)$1	1	17	24	13.2307
.((((((	chr6:27775856-27776113(+)$1	1	47	54	14.2307
(((((((	chr17:16284307-16284595(+)$1	1	85	92	13.4615
)..))))	chr7:128379315-128379579(+)$1	1	187	194	13.4615
)))))).	chr22:24951875-24952129(+)$1	1	85	92	13.0769
)).(((.	chr11:65625465-65625753(-)$1	1	44	51	17.4615
))).)))	chr15:44580970-44581218(+)$1	1	101	108	17.4615
......(	chr11:8704240-8704464(+)$1	1	8	15	17.4615
)))((((	chr14:21737411-21737684(-)$1	1	214	221	13.1538
((.((((	chr19:59055725-59056004(+)$1	1	13	20	17.4615
((((.((	chr20:2451244-2451532(-)$1	1	73	80	12.9999
)).))).	chr8:110346477-110346751(+)$1	1	67	74	17.4615
((((..(	chrX:152953455-152953804(+)$1	1	22	29	14.2307
..(((((	chr19:49999624-49999828(+)$1	1	18	25	13.4615
...((((	chr15:78832687-78832980(+)$1	1	59	66	17.4615
.))))))	chr9:113018606-113018926(-)$1	1	73	80	14.2307
(((.(((	chr15:66795738-66795962(-)$1	1	102	109	13.8461
)))))))	chr17:26903758-26904015(-)$1	1	57	64	13.9230
(.(((((	chr1:110950151-110950415(-)$1	1	82	89	13.9230
.((....	chr6:10747895-10748216(+)$1	1	27	34	17.4615
..))).)	chr14:69864855-69865148(-)$1	1	237	244	13.2307
)))))((	chr6:30688036-30688314(+)$1	1	46	53	17.4615
...))..	chr6:27100350-27100637(-)$1	1	132	139	17.4615
.....((	chr15:45003618-45003913(+)$1	1	207	214	13.1538

#PSSM
C : 0.89	c : 0.04	U : 0.03	G : 0.01	g : 0.01	
C : 0.72	G : 0.10	A : 0.06	U : 0.04	c : 0.04	g : 0.01	
C : 0.81	U : 0.06	A : 0.06	c : 0.04	g : 0.01	
G : 0.86	U : 0.06	g : 0.06	A : 0.01	
C : 0.84	c : 0.06	G : 0.06	U : 0.01	A : 0.01	
C : 0.92	c : 0.06	G : 0.01	
C : 0.84	c : 0.06	G : 0.03	U : 0.03	A : 0.03	

#score	950.9999999999987
#seq	65
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_CDS_m3_run1.nuc.txt

#NT
GGAAAAG	chr22:20114377-20114619(+)$1	242	134	141	12.6176
GGAAGAG	chr11:18428720-18429002(+)$1	282	41	48	16.7352
agaagag	chr16:74339400-74339727(+)$1	327	134	141	12.8382
GGAAGAA	chr9:100774628-100774854(+)$1	226	73	80	12.7647
GGCAGAG	chr1:39494353-39494566(+)$1	213	195	202	13.4999
GGAAGGG	chr16:1374636-1374926(+)$1	290	184	191	12.6176
GGAAGAA	chr22:42017892-42018187(+)$1	295	166	173	12.7647
AGAAGAG	chr14:21679463-21679714(-)$1	251	11	18	12.8382
GGAAGGG	chr1:28176893-28177189(+)$1	296	108	115	12.6176
GGAACAG	chr19:55648400-55648674(-)$1	274	192	199	12.6176
GGCAGAG	chr12:56553659-56553881(+)$1	222	94	101	13.4999
GGAAGGG	chr10:79795009-79795218(+)$1	209	170	177	12.6176
GGAAGUG	chr12:56435825-56436053(+)$1	228	184	191	12.5441
GGAAGAU	chr10:106026907-106027153(+)$1	246	150	157	12.6176
GGGAGAG	chr17:49232911-49233123(+)$1	212	166	173	12.9852
GGAAGUG	chr16:31201527-31201820(+)$1	293	176	183	12.5441
CGAAGAG	chr5:179155491-179155696(+)$1	205	142	149	12.6176
GGAAGAG	chr2:232577051-232577261(+)$1	210	105	112	16.7352
GGAAGAU	chr6:150123256-150123573(+)$1	317	103	110	12.6176
UGAAGAG	chr5:85916382-85916660(+)$1	278	105	112	12.9852
GGAAGAC	chr2:98263787-98264005(+)$1	218	63	70	12.4705
AGAAGAG	chr1:150192895-150193150(-)$1	255	108	115	12.8382
GGAAGAA	chr12:96259682-96259994(+)$1	312	130	137	12.7647
GGCAGAG	chr19:49999593-49999828(+)$1	235	201	208	13.4999
ggaggag	chr12:6878991-6879208(+)$1	217	94	101	12.2499
GGCAGAG	chr12:53692970-53693228(+)$1	258	177	184	13.4999
GGAAGAG	chr11:5291019-5291270(-)$1	251	212	219	16.7352
GGAAGGG	chr22:38075508-38075765(+)$1	257	50	57	12.6176
GGAAGAG	chr11:57509576-57509820(+)$1	244	85	92	16.7352
GGAUGAG	chr11:67353474-67353692(+)$1	218	63	70	12.1029
GGCAGAG	chr11:67353848-67354118(+)$1	270	224	231	13.4999
GGAAAAG	chr22:24964003-24964245(+)$1	242	113	120	12.6176
GGAAAAG	chr19:50183643-50183888(+)$1	245	20	27	12.6176
GGAAGAG	chr2:232577061-232577327(+)$1	266	95	102	16.7352
GGCAGAG	chr8:145649047-145649311(-)$1	264	152	159	13.4999
GGAAGAA	chr17:36909309-36909546(+)$1	237	136	143	12.7647
UGAAGAG	chr2:98263478-98263704(+)$1	226	67	74	12.9852
GGAACAG	chr6:33384341-33384623(-)$1	282	115	122	12.6176
GAAAGAG	chrX:153195382-153195704(-)$1	322	48	55	12.1029
GUAAGAG	chr16:88876729-88876969(-)$1	240	139	146	12.1764
GGCAGAG	chr16:31202186-31202438(+)$1	252	126	133	13.4999
GGCAGAG	chr17:45299100-45299319(+)$1	219	133	140	13.4999
GGGAGAG	chr16:31201327-31201562(+)$1	235	172	179	12.9852
UGAAGAG	chr5:133494045-133494330(-)$1	285	166	173	12.9852
UGAAGAG	chr19:9939416-9939651(+)$1	235	50	57	12.9852
GGUAGAG	chrX:47518153-47518436(-)$1	283	31	38	12.8382
GUAAGAG	chr10:102286630-102286932(-)$1	302	201	208	12.1764
GGAAGUG	chr22:38074532-38074746(+)$1	214	114	121	12.5441
GCAAGAG	chr20:2448295-2448504(-)$1	209	107	114	12.1029
GGAAGAA	chr12:56553942-56554204(+)$1	262	100	107	12.7647
GGAAGAG	chr12:6647174-6647403(+)$1	229	198	205	16.7352
UGAAGAG	chr16:1399228-1399528(-)$1	300	3	10	12.9852
GGAACAG	chr2:176043788-176044078(-)$1	290	256	263	12.6176
ggaagag	chr9:100777544-100777789(+)$1	245	131	138	16.7352
GGAACAG	chrX:119010376-119010594(+)$1	218	58	65	12.6176
GGAAGAG	chr7:26236118-26236379(-)$1	261	193	200	16.7352
GGAGGAG	chr21:33040683-33040929(+)$1	246	44	51	12.2499
GGCAGAG	chr17:49239000-49239269(+)$1	269	257	264	13.4999
GGAGGAG	chr1:46083146-46083363(+)$1	217	107	114	12.2499
ggaagag	chr9:130931229-130931515(-)$1	286	127	134	16.7352
GGGAGAG	chr17:49232995-49233241(+)$1	246	82	89	12.9852
UGAAGAG	chr17:41154673-41154900(+)$1	227	118	125	12.9852
GGCAGAG	chr16:723952-724206(+)$1	254	52	59	13.4999
GGAAGAU	chr10:106026953-106027276(+)$1	323	104	111	12.6176
GGAAGCG	chr19:5691462-5691706(+)$1	244	105	112	12.3970
AGAAGAG	chr6:33385160-33385424(-)$1	264	227	234	12.8382
GGAAAAG	chr21:40551760-40552013(-)$1	253	157	164	12.6176

#otherMatches

#Struct PSSM
:::::BB	chr12:56552041-56552289(+)$1	248	194	201	16.7352
::::::I	chr22:20114377-20114619(+)$1	242	134	141	12.6176
b22dddd	chr11:18428720-18429002(+)$1	282	41	48	16.7352
5555a]d	chr16:74339400-74339727(+)$1	327	134	141	12.8382
!!ccctt	chr9:100774628-100774854(+)$1	226	73	80	12.7647
ddd::::	chr1:39494353-39494566(+)$1	213	195	202	13.4999
ccc[a[d	chr16:1374636-1374926(+)$1	290	184	191	12.6176
ggggg]b	chr22:42017892-42018187(+)$1	295	166	173	12.7647
::::JJJ	chr14:21679463-21679714(-)$1	251	11	18	12.8382
g!!dddd	chr1:28176893-28177189(+)$1	296	108	115	12.6176
bb:eeee	chr19:55648400-55648674(-)$1	274	192	199	12.6176
bb]bb]a	chr12:56553659-56553881(+)$1	222	94	101	13.4999
hhh!!ao	chr10:79795009-79795218(+)$1	209	170	177	12.6176
EEEZZZE	chr12:56435825-56436053(+)$1	228	184	191	12.5441
ffffff:	chr10:106026907-106027153(+)$1	246	150	157	12.6176
eeedddd	chr17:49232911-49233123(+)$1	212	166	173	12.9852
ee4444e	chr16:31201527-31201820(+)$1	293	176	183	12.5441
##dddd!	chr5:179155491-179155696(+)$1	205	142	149	12.6176
bb]gggg	chr2:232577051-232577261(+)$1	210	105	112	16.7352
IIIIIIK	chr6:150123256-150123573(+)$1	317	103	110	12.6176
:FFFFFF	chr5:85916382-85916660(+)$1	278	105	112	12.9852
dd!!ccc	chr2:98263787-98264005(+)$1	218	63	70	12.4705
ff]hhhh	chr1:150192895-150193150(-)$1	255	108	115	12.8382
=======	chr12:96259682-96259994(+)$1	312	130	137	12.7647
dddllld	chr19:49999593-49999828(+)$1	235	201	208	13.4999
ggggg]d	chr12:6878991-6879208(+)$1	217	94	101	12.2499
DDggggg	chr12:53692970-53693228(+)$1	258	177	184	13.4999
333a]gg	chr11:5291019-5291270(-)$1	251	212	219	16.7352
ba!!hhh	chr22:38075508-38075765(+)$1	257	50	57	12.6176
wwwwwww	chr11:57509576-57509820(+)$1	244	85	92	16.7352
%%%%%%a	chr11:67353474-67353692(+)$1	218	63	70	12.1029
hhhhnnn	chr11:67353848-67354118(+)$1	270	224	231	13.4999
boooooo	chr22:24964003-24964245(+)$1	242	113	120	12.6176
lccc]ee	chr19:50183643-50183888(+)$1	245	20	27	12.6176
wwwwwww	chr2:232577061-232577327(+)$1	266	95	102	16.7352
4ddddcc	chr8:145649047-145649311(-)$1	264	152	159	13.4999
HHHHHH:	chr17:36909309-36909546(+)$1	237	136	143	12.7647
:::::::	chr2:98263478-98263704(+)$1	226	67	74	12.9852
CCC:::E	chr6:33384341-33384623(-)$1	282	115	122	12.6176
]a22fff	chrX:153195382-153195704(-)$1	322	48	55	12.1029
hh"""==	chr16:88876729-88876969(-)$1	240	139	146	12.1764
eee"""b	chr16:31202186-31202438(+)$1	252	126	133	13.4999
cvvvvvv	chr17:45299100-45299319(+)$1	219	133	140	13.4999
?GGGGGG	chr16:31201327-31201562(+)$1	235	172	179	12.9852
eeeee]a	chr5:133494045-133494330(-)$1	285	166	173	12.9852
!ffffff	chr19:9939416-9939651(+)$1	235	50	57	12.9852
cccqqqq	chrX:47518153-47518436(-)$1	283	31	38	12.8382
ee22a99	chr10:102286630-102286932(-)$1	302	201	208	12.1764
]a22bbf	chr22:38074532-38074746(+)$1	214	114	121	12.5441
hhh:::f	chr20:2448295-2448504(-)$1	209	107	114	12.1029
eeeeeee	chr12:56553942-56554204(+)$1	262	100	107	12.7647
}HHHHHH	chr12:6647174-6647403(+)$1	229	198	205	16.7352
dqqqqqq	chr16:1399228-1399528(-)$1	300	3	10	12.9852
GGGGGYY	chr2:176043788-176044078(-)$1	290	256	263	12.6176
:::::::	chr9:100777544-100777789(+)$1	245	131	138	16.7352
ggooooo	chrX:119010376-119010594(+)$1	218	58	65	12.6176
h[=====	chr7:26236118-26236379(-)$1	261	193	200	16.7352
fDDDD{C	chr21:33040683-33040929(+)$1	246	44	51	12.2499
cc]bb]c	chr17:49239000-49239269(+)$1	269	257	264	13.4999
cceeeee	chr1:46083146-46083363(+)$1	217	107	114	12.2499
CCYYEEE	chr9:130931229-130931515(-)$1	286	127	134	16.7352
IIIIIII	chr17:49232995-49233241(+)$1	246	82	89	12.9852
:iiiiii	chr17:41154673-41154900(+)$1	227	118	125	12.9852
doooooo	chr16:723952-724206(+)$1	254	52	59	13.4999
bb22a33	chr10:106026953-106027276(+)$1	323	104	111	12.6176
ee[bb[f	chr19:5691462-5691706(+)$1	244	105	112	12.3970
ccc[ddd	chr6:33385160-33385424(-)$1	264	227	234	12.8382
h]a4444	chr21:40551760-40552013(-)$1	253	157	164	12.6176

#DB
.....))	chr12:56552041-56552289(+)$1	1	194	201	16.7352
......)	chr22:20114377-20114619(+)$1	1	134	141	12.6176
)..))))	chr11:18428720-18429002(+)$1	1	41	48	16.7352
....).)	chr16:74339400-74339727(+)$1	1	134	141	12.8382
..(((..	chr9:100774628-100774854(+)$1	1	73	80	12.7647
)))....	chr1:39494353-39494566(+)$1	1	195	202	13.4999
(((.(.(	chr16:1374636-1374926(+)$1	1	184	191	12.6176
))))).)	chr22:42017892-42018187(+)$1	1	166	173	12.7647
....(((	chr14:21679463-21679714(-)$1	1	11	18	12.8382
(..((((	chr1:28176893-28177189(+)$1	1	108	115	12.6176
)).((((	chr19:55648400-55648674(-)$1	1	192	199	12.6176
)).)).)	chr12:56553659-56553881(+)$1	1	94	101	13.4999
(((..(.	chr10:79795009-79795218(+)$1	1	170	177	12.6176
)))...)	chr12:56435825-56436053(+)$1	1	184	191	12.5441
)))))).	chr10:106026907-106027153(+)$1	1	150	157	12.6176
)))))))	chr17:49232911-49233123(+)$1	1	166	173	12.9852
))....)	chr16:31201527-31201820(+)$1	1	176	183	12.5441
..((((.	chr5:179155491-179155696(+)$1	1	142	149	12.6176
)).))))	chr2:232577051-232577261(+)$1	1	105	112	16.7352
((((((.	chr6:150123256-150123573(+)$1	1	103	110	12.6176
.((((((	chr5:85916382-85916660(+)$1	1	105	112	12.9852
((..(((	chr2:98263787-98264005(+)$1	1	63	70	12.4705
)).))))	chr1:150192895-150193150(-)$1	1	108	115	12.8382
)))))))	chr12:96259682-96259994(+)$1	1	130	137	12.7647
(((...)	chr19:49999593-49999828(+)$1	1	201	208	13.4999
))))).)	chr12:6878991-6879208(+)$1	1	94	101	12.2499
))(((((	chr12:53692970-53693228(+)$1	1	177	184	13.4999
...).))	chr11:5291019-5291270(-)$1	1	212	219	16.7352
((..(((	chr22:38075508-38075765(+)$1	1	50	57	12.6176
.......	chr11:57509576-57509820(+)$1	1	85	92	16.7352
......(	chr11:67353474-67353692(+)$1	1	63	70	12.1029
((((...	chr11:67353848-67354118(+)$1	1	224	231	13.4999
(......	chr22:24964003-24964245(+)$1	1	113	120	12.6176
.))).))	chr19:50183643-50183888(+)$1	1	20	27	12.6176
.......	chr2:232577061-232577327(+)$1	1	95	102	16.7352
.))))))	chr8:145649047-145649311(-)$1	1	152	159	13.4999
((((((.	chr17:36909309-36909546(+)$1	1	136	143	12.7647
.......	chr2:98263478-98263704(+)$1	1	67	74	12.9852
(((...(	chr6:33384341-33384623(-)$1	1	115	122	12.6176
.)..)))	chrX:153195382-153195704(-)$1	1	48	55	12.1029
((...((	chr16:88876729-88876969(-)$1	1	139	146	12.1764
(((...(	chr16:31202186-31202438(+)$1	1	126	133	13.4999
(......	chr17:45299100-45299319(+)$1	1	133	140	13.4999
.))))))	chr16:31201327-31201562(+)$1	1	172	179	12.9852
))))).)	chr5:133494045-133494330(-)$1	1	166	173	12.9852
.((((((	chr19:9939416-9939651(+)$1	1	50	57	12.9852
(((....	chrX:47518153-47518436(-)$1	1	31	38	12.8382
))..)..	chr10:102286630-102286932(-)$1	1	201	208	12.1764
.)..)))	chr22:38074532-38074746(+)$1	1	114	121	12.5441
)))...(	chr20:2448295-2448504(-)$1	1	107	114	12.1029
)))))))	chr12:56553942-56554204(+)$1	1	100	107	12.7647
.))))))	chr12:6647174-6647403(+)$1	1	198	205	16.7352
(......	chr16:1399228-1399528(-)$1	1	3	10	12.9852
)))))..	chr2:176043788-176044078(-)$1	1	256	263	12.6176
.......	chr9:100777544-100777789(+)$1	1	131	138	16.7352
((.....	chrX:119010376-119010594(+)$1	1	58	65	12.6176
(.(((((	chr7:26236118-26236379(-)$1	1	193	200	16.7352
)((((.(	chr21:33040683-33040929(+)$1	1	44	51	12.2499
)).)).)	chr17:49239000-49239269(+)$1	1	257	264	13.4999
))(((((	chr1:46083146-46083363(+)$1	1	107	114	12.2499
))..)))	chr9:130931229-130931515(-)$1	1	127	134	16.7352
(((((((	chr17:49232995-49233241(+)$1	1	82	89	12.9852
.((((((	chr17:41154673-41154900(+)$1	1	118	125	12.9852
(......	chr16:723952-724206(+)$1	1	52	59	13.4999
))..)..	chr10:106026953-106027276(+)$1	1	104	111	12.6176
((.((.(	chr19:5691462-5691706(+)$1	1	105	112	12.3970
(((.(((	chr6:33385160-33385424(-)$1	1	227	234	12.8382
).)....	chr21:40551760-40552013(-)$1	1	157	164	12.6176

#PSSM
G : 0.79	U : 0.08	A : 0.04	g : 0.04	a : 0.01	C : 0.01	
G : 0.88	g : 0.05	U : 0.02	A : 0.01	C : 0.01	
A : 0.73	C : 0.14	a : 0.05	G : 0.04	U : 0.01	
A : 0.89	a : 0.04	G : 0.02	g : 0.01	U : 0.01	
G : 0.82	A : 0.05	g : 0.05	C : 0.05	
A : 0.82	a : 0.05	G : 0.05	U : 0.04	C : 0.01	
G : 0.80	A : 0.07	g : 0.05	U : 0.04	C : 0.01	

#score	909.0294117647053
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_transcript_m1_run2.nuc.txt

#NT
AAGAA	chr19:54647108-54647337(+)$1	229	0	5	14.9999
AAGAA	chr14:102548639-102548861(-)$1	222	215	220	14.9999
AAGAA	chr7:100482545-100482760(+)$1	215	4	9	14.9999
AAGAA	chr13:41556201-41556500(-)$1	299	85	90	14.9999
AAGAA	chr1:193107135-193107404(+)$1	269	137	142	14.9999
AAGAA	chr1:40214619-40214869(+)$1	250	95	100	14.9999
AAGAA	chr16:15095559-15095811(+)$1	252	236	241	14.9999
AAGAA	chr3:56605108-56605394(+)$1	286	24	29	14.9999
aagaa	chr4:174253121-174253329(-)$1	208	12	17	14.9999
AAGAA	chr11:61897856-61898153(+)$1	297	163	168	14.9999
AAGAA	chr16:24802382-24802635(+)$1	253	80	85	14.9999
AAGAA	chr6:79700486-79700708(-)$1	222	11	16	14.9999
AAGAA	chrX:76891312-76891590(-)$1	278	113	118	14.9999
AAGAA	chr17:2297273-2297549(-)$1	276	162	167	14.9999
AAGAA	chr11:108712072-108712306(+)$1	234	93	98	14.9999
AAGAA	chr5:74064960-74065221(+)$1	261	112	117	14.9999
AAGAA	chr19:10291353-10291596(-)$1	243	89	94	14.9999
AAGAA	chr5:137520726-137520963(+)$1	237	101	106	14.9999
AAGAA	chr7:65432619-65432860(-)$1	241	77	82	14.9999
AAGAA	chr14:39650180-39650465(+)$1	285	0	5	14.9999
AAGAA	chr8:41791468-41791782(-)$1	314	26	31	14.9999
AAGAA	chr5:65474519-65474771(+)$1	252	43	48	14.9999
AAGAA	chr12:133331391-133331701(-)$1	310	45	50	14.9999
AAGAA	chr19:9271069-9271361(+)$1	292	58	63	14.9999
aagaa	chr16:20729282-20729565(+)$1	283	0	5	14.9999
AAGAA	chr19:10262070-10262323(-)$1	253	37	42	14.9999
AAGAA	chr17:55028021-55028327(-)$1	306	52	57	14.9999
AAGAA	chr17:4910111-4910388(+)$1	277	110	115	14.9999
AAGAA	chr7:156961667-156961917(+)$1	250	75	80	14.9999
AAGAA	chr11:77335906-77336187(-)$1	281	156	161	14.9999
AAGAA	chr16:89652977-89653206(+)$1	229	151	156	14.9999
AAGAA	chr1:186326449-186326703(-)$1	254	150	155	14.9999
AAGAA	chr10:51768557-51768847(+)$1	290	231	236	14.9999
AAGAA	chr2:220099568-220099867(+)$1	299	101	106	14.9999
AAGAA	chr2:232322257-232322489(-)$1	232	28	33	14.9999
AAGAA	chr11:65733571-65733788(+)$1	217	58	63	14.9999
AAGAA	chr18:33754363-33754694(+)$1	331	121	126	14.9999
AAGAA	chr15:91517720-91517954(-)$1	234	176	181	14.9999
AAGAA	chr11:71941739-71941987(+)$1	248	136	141	14.9999
AAGAA	chr7:158663732-158663986(+)$1	254	125	130	14.9999
AAGAA	chr2:220114941-220115217(-)$1	276	136	141	14.9999
AAGAA	chr1:1575556-1575848(-)$1	292	74	79	14.9999
AAGAA	chr18:47017062-47017264(-)$1	202	164	169	14.9999
AAGAA	chr17:27239877-27240135(-)$1	258	134	139	14.9999
AAGAA	chr9:95027707-95027932(-)$1	225	128	133	14.9999
aagaa	chr6:33287693-33288003(-)$1	310	105	110	14.9999
AAGAA	chr12:112677622-112677932(-)$1	310	106	111	14.9999
AAGAA	chr14:102452878-102453140(+)$1	262	214	219	14.9999
AAGAA	chr6:31595445-31595671(+)$1	226	220	225	14.9999
AAGAA	chr6:43491616-43491842(-)$1	226	124	129	14.9999
AAGAA	chr10:22862151-22862471(-)$1	320	180	185	14.9999
AAGAA	chr7:100283741-100283989(-)$1	248	140	145	14.9999
aagaa	chr1:70715980-70716238(+)$1	258	80	85	14.9999
AAGAA	chr20:34136225-34136486(+)$1	261	94	99	14.9999
AAGAA	chr7:104748210-104748462(+)$1	252	153	158	14.9999
AAGAA	chr9:123298652-123298899(-)$1	247	194	199	14.9999
AAGAA	chr1:154209498-154209712(+)$1	214	198	203	14.9999
AAGAA	chr1:153713669-153713944(+)$1	275	116	121	14.9999
AAGAA	chr3:169700848-169701090(+)$1	242	124	129	14.9999
AAGAA	chr14:39646524-39646760(+)$1	236	177	182	14.9999
AAGAA	chr15:22845659-22845944(+)$1	285	219	224	14.9999
AAGAA	chr22:22661454-22661692(+)$1	238	25	30	14.9999
AAGAA	chr14:23531524-23531745(-)$1	221	129	134	14.9999
AAGAA	chr15:85085304-85085619(-)$1	315	24	29	14.9999

#otherMatches

#Struct PSSM
eeDDD	chrX:65393409-65393670(+)$1	261	245	250	14.9999
::ddd	chr19:54647108-54647337(+)$1	229	0	5	14.9999
:::::	chr14:102548639-102548861(-)$1	222	215	220	14.9999
:FFFF	chr7:100482545-100482760(+)$1	215	4	9	14.9999
ooooo	chr13:41556201-41556500(-)$1	299	85	90	14.9999
6666d	chr1:193107135-193107404(+)$1	269	137	142	14.9999
c[eee	chr1:40214619-40214869(+)$1	250	95	100	14.9999
\\\\\	chr16:15095559-15095811(+)$1	252	236	241	14.9999
FFFF{	chr3:56605108-56605394(+)$1	286	24	29	14.9999
:::::	chr4:174253121-174253329(-)$1	208	12	17	14.9999
77777	chr11:61897856-61898153(+)$1	297	163	168	14.9999
:::::	chr16:24802382-24802635(+)$1	253	80	85	14.9999
:::::	chr6:79700486-79700708(-)$1	222	11	16	14.9999
vvhhh	chrX:76891312-76891590(-)$1	278	113	118	14.9999
:::::	chr17:2297273-2297549(-)$1	276	162	167	14.9999
:::::	chr11:108712072-108712306(+)$1	234	93	98	14.9999
GGGGH	chr5:74064960-74065221(+)$1	261	112	117	14.9999
:::::	chr19:10291353-10291596(-)$1	243	89	94	14.9999
:::GG	chr5:137520726-137520963(+)$1	237	101	106	14.9999
nnnnn	chr7:65432619-65432860(-)$1	241	77	82	14.9999
:::::	chr14:39650180-39650465(+)$1	285	0	5	14.9999
:::::	chr8:41791468-41791782(-)$1	314	26	31	14.9999
QQBBM	chr5:65474519-65474771(+)$1	252	43	48	14.9999
4444e	chr12:133331391-133331701(-)$1	310	45	50	14.9999
CCCKK	chr19:9271069-9271361(+)$1	292	58	63	14.9999
:::::	chr16:20729282-20729565(+)$1	283	0	5	14.9999
:::::	chr19:10262070-10262323(-)$1	253	37	42	14.9999
sssss	chr17:55028021-55028327(-)$1	306	52	57	14.9999
ffff:	chr17:4910111-4910388(+)$1	277	110	115	14.9999
b]fff	chr7:156961667-156961917(+)$1	250	75	80	14.9999
:::::	chr11:77335906-77336187(-)$1	281	156	161	14.9999
:::::	chr16:89652977-89653206(+)$1	229	151	156	14.9999
ddduu	chr1:186326449-186326703(-)$1	254	150	155	14.9999
yyyyy	chr10:51768557-51768847(+)$1	290	231	236	14.9999
:::::	chr2:220099568-220099867(+)$1	299	101	106	14.9999
:::::	chr2:232322257-232322489(-)$1	232	28	33	14.9999
:::::	chr11:65733571-65733788(+)$1	217	58	63	14.9999
FFF::	chr18:33754363-33754694(+)$1	331	121	126	14.9999
c::::	chr15:91517720-91517954(-)$1	234	176	181	14.9999
ddd55	chr11:71941739-71941987(+)$1	248	136	141	14.9999
dddd:	chr7:158663732-158663986(+)$1	254	125	130	14.9999
eeeee	chr2:220114941-220115217(-)$1	276	136	141	14.9999
ddeee	chr1:1575556-1575848(-)$1	292	74	79	14.9999
E~~~~	chr18:47017062-47017264(-)$1	202	164	169	14.9999
fffff	chr17:27239877-27240135(-)$1	258	134	139	14.9999
ddddd	chr9:95027707-95027932(-)$1	225	128	133	14.9999
EEENN	chr6:33287693-33288003(-)$1	310	105	110	14.9999
eee::	chr12:112677622-112677932(-)$1	310	106	111	14.9999
qqqqq	chr14:102452878-102453140(+)$1	262	214	219	14.9999
YYCCC	chr6:31595445-31595671(+)$1	226	220	225	14.9999
d:ddd	chr6:43491616-43491842(-)$1	226	124	129	14.9999
e5555	chr10:22862151-22862471(-)$1	320	180	185	14.9999
^^^^^	chr7:100283741-100283989(-)$1	248	140	145	14.9999
^^^^^	chr1:70715980-70716238(+)$1	258	80	85	14.9999
hhhhh	chr20:34136225-34136486(+)$1	261	94	99	14.9999
uuuuu	chr7:104748210-104748462(+)$1	252	153	158	14.9999
ZZCCC	chr9:123298652-123298899(-)$1	247	194	199	14.9999
2bb]e	chr1:154209498-154209712(+)$1	214	198	203	14.9999
:::::	chr1:153713669-153713944(+)$1	275	116	121	14.9999
:::::	chr3:169700848-169701090(+)$1	242	124	129	14.9999
mmbb]	chr14:39646524-39646760(+)$1	236	177	182	14.9999
qbb]g	chr15:22845659-22845944(+)$1	285	219	224	14.9999
NNNNN	chr22:22661454-22661692(+)$1	238	25	30	14.9999
EEEYY	chr14:23531524-23531745(-)$1	221	129	134	14.9999
dd$$$	chr15:85085304-85085619(-)$1	315	24	29	14.9999

#DB
)))))	chrX:65393409-65393670(+)$1	1	245	250	14.9999
..(((	chr19:54647108-54647337(+)$1	1	0	5	14.9999
.....	chr14:102548639-102548861(-)$1	1	215	220	14.9999
.((((	chr7:100482545-100482760(+)$1	1	4	9	14.9999
.....	chr13:41556201-41556500(-)$1	1	85	90	14.9999
....)	chr1:193107135-193107404(+)$1	1	137	142	14.9999
(.(((	chr1:40214619-40214869(+)$1	1	95	100	14.9999
.....	chr16:15095559-15095811(+)$1	1	236	241	14.9999
((((.	chr3:56605108-56605394(+)$1	1	24	29	14.9999
.....	chr4:174253121-174253329(-)$1	1	12	17	14.9999
.....	chr11:61897856-61898153(+)$1	1	163	168	14.9999
.....	chr16:24802382-24802635(+)$1	1	80	85	14.9999
.....	chr6:79700486-79700708(-)$1	1	11	16	14.9999
..)))	chrX:76891312-76891590(-)$1	1	113	118	14.9999
.....	chr17:2297273-2297549(-)$1	1	162	167	14.9999
.....	chr11:108712072-108712306(+)$1	1	93	98	14.9999
)))))	chr5:74064960-74065221(+)$1	1	112	117	14.9999
.....	chr19:10291353-10291596(-)$1	1	89	94	14.9999
...((	chr5:137520726-137520963(+)$1	1	101	106	14.9999
.....	chr7:65432619-65432860(-)$1	1	77	82	14.9999
.....	chr14:39650180-39650465(+)$1	1	0	5	14.9999
.....	chr8:41791468-41791782(-)$1	1	26	31	14.9999
..((.	chr5:65474519-65474771(+)$1	1	43	48	14.9999
....)	chr12:133331391-133331701(-)$1	1	45	50	14.9999
(((..	chr19:9271069-9271361(+)$1	1	58	63	14.9999
.....	chr16:20729282-20729565(+)$1	1	0	5	14.9999
.....	chr19:10262070-10262323(-)$1	1	37	42	14.9999
.....	chr17:55028021-55028327(-)$1	1	52	57	14.9999
)))).	chr17:4910111-4910388(+)$1	1	110	115	14.9999
).)))	chr7:156961667-156961917(+)$1	1	75	80	14.9999
.....	chr11:77335906-77336187(-)$1	1	156	161	14.9999
.....	chr16:89652977-89653206(+)$1	1	151	156	14.9999
(((..	chr1:186326449-186326703(-)$1	1	150	155	14.9999
.....	chr10:51768557-51768847(+)$1	1	231	236	14.9999
.....	chr2:220099568-220099867(+)$1	1	101	106	14.9999
.....	chr2:232322257-232322489(-)$1	1	28	33	14.9999
.....	chr11:65733571-65733788(+)$1	1	58	63	14.9999
)))..	chr18:33754363-33754694(+)$1	1	121	126	14.9999
)....	chr15:91517720-91517954(-)$1	1	176	181	14.9999
)))..	chr11:71941739-71941987(+)$1	1	136	141	14.9999
)))).	chr7:158663732-158663986(+)$1	1	125	130	14.9999
(((((	chr2:220114941-220115217(-)$1	1	136	141	14.9999
)))))	chr1:1575556-1575848(-)$1	1	74	79	14.9999
)....	chr18:47017062-47017264(-)$1	1	164	169	14.9999
)))))	chr17:27239877-27240135(-)$1	1	134	139	14.9999
(((((	chr9:95027707-95027932(-)$1	1	128	133	14.9999
(((..	chr6:33287693-33288003(-)$1	1	105	110	14.9999
)))..	chr12:112677622-112677932(-)$1	1	106	111	14.9999
.....	chr14:102452878-102453140(+)$1	1	214	219	14.9999
..)))	chr6:31595445-31595671(+)$1	1	220	225	14.9999
).(((	chr6:43491616-43491842(-)$1	1	124	129	14.9999
)....	chr10:22862151-22862471(-)$1	1	180	185	14.9999
.....	chr7:100283741-100283989(-)$1	1	140	145	14.9999
.....	chr1:70715980-70716238(+)$1	1	80	85	14.9999
(((((	chr20:34136225-34136486(+)$1	1	94	99	14.9999
.....	chr7:104748210-104748462(+)$1	1	153	158	14.9999
..)))	chr9:123298652-123298899(-)$1	1	194	199	14.9999
.)).)	chr1:154209498-154209712(+)$1	1	198	203	14.9999
.....	chr1:153713669-153713944(+)$1	1	116	121	14.9999
.....	chr3:169700848-169701090(+)$1	1	124	129	14.9999
..)).	chr14:39646524-39646760(+)$1	1	177	182	14.9999
.)).)	chr15:22845659-22845944(+)$1	1	219	224	14.9999
.....	chr22:22661454-22661692(+)$1	1	25	30	14.9999
)))..	chr14:23531524-23531745(-)$1	1	129	134	14.9999
((...	chr15:85085304-85085619(-)$1	1	24	29	14.9999

#PSSM
A : 0.93	a : 0.06	
A : 0.93	a : 0.06	
G : 0.93	g : 0.06	
A : 0.93	a : 0.06	
A : 0.93	a : 0.06	

#score	974.9999999999995
#seq	65
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_UTR_m2_run1.nuc.txt

#NT
AGC	chr1:17765939-17766170(-)$1	231	34	37	9.0000
AGC	chr19:39337856-39338123(-)$1	267	11	14	9.0000
AGC	chr9:74979927-74980173(-)$1	246	24	27	9.0000
AGC	chr17:49230844-49231122(+)$1	278	24	27	9.0000
AGC	chr15:30114169-30114419(-)$1	250	121	124	9.0000
AGC	chr1:45285541-45285767(-)$1	226	82	85	9.0000
AGC	chr3:180707287-180707604(-)$1	317	10	13	9.0000
AGC	chr1:32403510-32403754(-)$1	244	156	159	9.0000
AGC	chr9:128003277-128003506(-)$1	229	105	108	9.0000
AGC	chr11:770385-770622(-)$1	237	171	174	9.0000
AGC	chr8:103424373-103424663(-)$1	290	155	158	9.0000
AGC	chr12:6643877-6644083(+)$1	206	96	99	9.0000
AGC	chr21:45180506-45180745(+)$1	239	46	49	9.0000
AGC	chr16:18812652-18812932(-)$1	280	38	41	9.0000
AGC	chr1:29508135-29508431(-)$1	296	1	4	9.0000
AGC	chr12:133404825-133405099(-)$1	274	28	31	9.0000
AGC	chr4:120221569-120221820(-)$1	251	86	89	9.0000
AGC	chrX:153580514-153580752(-)$1	238	71	74	9.0000
AGC	chr11:66384132-66384376(+)$1	244	108	111	9.0000
AGC	chr8:27695130-27695403(-)$1	273	32	35	9.0000
AGC	chr11:111896093-111896396(+)$1	303	138	141	9.0000
AGC	chr6:29600521-29600796(-)$1	275	0	3	9.0000
AGC	chr8:126010695-126010944(+)$1	249	4	7	9.0000
AGC	chr5:139028189-139028410(+)$1	221	75	78	9.0000
AGC	chr7:100424796-100425053(-)$1	257	22	25	9.0000
AGC	chrX:119602912-119603219(-)$1	307	12	15	9.0000
AGC	chr17:74733219-74733474(-)$1	255	24	27	9.0000
AGC	chr17:4851604-4851893(-)$1	289	17	20	9.0000
AGC	chr9:37465177-37465446(-)$1	269	66	69	9.0000
AGC	chr6:41755335-41755581(+)$1	246	11	14	9.0000
AGC	chrX:151142893-151143144(-)$1	251	4	7	9.0000
AGC	chr12:120907211-120907603(-)$1	392	10	13	9.0000
AGC	chr11:77790687-77790940(-)$1	253	60	63	9.0000
AGC	chr8:145747990-145748236(+)$1	246	25	28	9.0000
AGC	chr22:21996519-21996819(+)$1	300	22	25	9.0000
AGC	chr22:18111289-18111597(-)$1	308	161	164	9.0000
AGC	chr3:50273566-50273922(+)$1	356	121	124	9.0000
AGC	chr3:184081089-184081332(+)$1	243	4	7	9.0000
AGC	chr11:236898-237244(+)$1	346	0	3	9.0000
AGC	chr7:5570089-5570329(-)$1	240	12	15	9.0000
AGC	chr6:10747933-10748215(+)$1	282	93	96	9.0000
AGC	chr5:68389978-68390243(+)$1	265	43	46	9.0000
AGC	chr7:5645688-5645938(+)$1	250	4	7	9.0000
AGC	chrX:152953549-152953891(+)$1	342	3	6	9.0000
AGC	chr11:66384203-66384453(+)$1	250	37	40	9.0000
AGC	chr9:35072266-35072500(-)$1	234	4	7	9.0000
AGC	chr10:75757795-75758075(+)$1	280	36	39	9.0000
AGC	chr1:182360383-182360646(-)$1	263	122	125	9.0000
AGC	chr10:70660988-70661268(+)$1	280	186	189	9.0000
AGC	chr1:113246164-113246408(-)$1	244	6	9	9.0000
AGC	chr3:184032280-184032555(+)$1	275	77	80	9.0000
AGC	chrX:153588654-153588905(-)$1	251	74	77	9.0000
AGC	chr16:2563918-2564199(+)$1	281	56	59	9.0000
AGC	chr6:31703976-31704254(-)$1	278	46	49	9.0000
agc	chr19:11071815-11072101(+)$1	286	59	62	9.0000
Agc	chr20:60718165-60718466(-)$1	301	85	88	9.0000
agc	chr6:168227510-168227774(+)$1	264	126	129	9.0000
AGC	chr5:179248512-179248793(+)$1	281	66	69	9.0000
agc	chr22:41488224-41488488(+)$1	264	25	28	9.0000
AGC	chr17:79876234-79876474(-)$1	240	107	110	9.0000
agc	chr1:1284443-1284711(-)$1	268	69	72	9.0000
AGC	chr19:1206247-1206494(+)$1	247	31	34	9.0000
AGC	chr17:26902343-26902590(-)$1	247	30	33	9.0000
agc	chr19:40791084-40791368(-)$1	284	81	84	9.0000
AGC	chr4:174254622-174254911(-)$1	289	5	8	9.0000
AGC	chr4:1873070-1873341(+)$1	271	64	67	9.0000
AGC	chr7:150777515-150777787(-)$1	272	53	56	9.0000
AGC	chr9:130953609-130953870(-)$1	261	25	28	9.0000
AGC	chr16:30076984-30077336(+)$1	352	41	44	9.0000
AGC	chr19:42365078-42365327(+)$1	249	12	15	9.0000
AGC	chr1:185125782-185126116(-)$1	334	52	55	9.0000
AGC	chr16:9185412-9185656(+)$1	244	15	18	9.0000
AGC	chr6:109703464-109703718(-)$1	254	43	46	9.0000
AGC	chr10:73610838-73611087(-)$1	249	11	14	9.0000
AGC	chr4:152020677-152020963(+)$1	286	121	124	9.0000
AGC	chr12:53693048-53693304(+)$1	256	2	5	9.0000
AGC	chr4:39459912-39460163(-)$1	251	32	35	9.0000
AGC	chr19:1879458-1879734(-)$1	276	40	43	9.0000
AGC	chr6:135502484-135502762(+)$1	278	49	52	9.0000
agc	chr22:20067972-20068239(+)$1	267	56	59	9.0000
AGC	chr17:7465262-7465530(+)$1	268	107	110	9.0000
AGC	chr5:126112898-126113340(+)$1	442	137	140	9.0000
AGC	chr20:5100427-5100672(-)$1	245	9	12	9.0000
AGC	chr19:18942673-18942951(+)$1	278	31	34	9.0000
AGC	chr19:3094497-3094767(+)$1	270	185	188	9.0000
agc	chr5:139027947-139028205(+)$1	258	6	9	9.0000
AGC	chr12:6643616-6643832(+)$1	216	46	49	9.0000
AGC	chr12:56498270-56498594(+)$1	324	16	19	9.0000
agc	chr19:39833015-39833302(+)$1	287	60	63	9.0000
AGC	chr19:974672-974897(+)$1	225	12	15	9.0000
AGC	chr4:56502329-56502548(-)$1	219	30	33	9.0000
AGC	chr12:56510461-56510675(+)$1	214	49	52	9.0000
AGC	chr17:79479245-79479502(-)$1	257	175	178	9.0000
AGC	chr16:88878123-88878416(-)$1	293	122	125	9.0000
agc	chr12:125478218-125478465(+)$1	247	28	31	9.0000
AGC	chr17:4607138-4607386(-)$1	248	61	64	9.0000
AGC	chr19:42746539-42746800(-)$1	261	9	12	9.0000

#otherMatches

#Struct PSSM
III	chr1:26232774-26233008(-)$1	234	32	35	9.0000
Hdd	chr1:17765939-17766170(-)$1	231	34	37	9.0000
hhh	chr19:39337856-39338123(-)$1	267	11	14	9.0000
EEB	chr9:74979927-74980173(-)$1	246	24	27	9.0000
:FF	chr17:49230844-49231122(+)$1	278	24	27	9.0000
]dd	chr15:30114169-30114419(-)$1	250	121	124	9.0000
!bb	chr1:45285541-45285767(-)$1	226	82	85	9.0000
EEE	chr3:180707287-180707604(-)$1	317	10	13	9.0000
:ff	chr1:32403510-32403754(-)$1	244	156	159	9.0000
qcc	chr9:128003277-128003506(-)$1	229	105	108	9.0000
ggg	chr11:770385-770622(-)$1	237	171	174	9.0000
{CC	chr8:103424373-103424663(-)$1	290	155	158	9.0000
bcc	chr12:6643877-6644083(+)$1	206	96	99	9.0000
HHK	chr21:45180506-45180745(+)$1	239	46	49	9.0000
:hh	chr16:18812652-18812932(-)$1	280	38	41	9.0000
:ee	chr1:29508135-29508431(-)$1	296	1	4	9.0000
NJJ	chr12:133404825-133405099(-)$1	274	28	31	9.0000
qqq	chr4:120221569-120221820(-)$1	251	86	89	9.0000
fff	chrX:153580514-153580752(-)$1	238	71	74	9.0000
[cc	chr11:66384132-66384376(+)$1	244	108	111	9.0000
nnn	chr8:27695130-27695403(-)$1	273	32	35	9.0000
ddd	chr11:111896093-111896396(+)$1	303	138	141	9.0000
:::	chr6:29600521-29600796(-)$1	275	0	3	9.0000
EEE	chr8:126010695-126010944(+)$1	249	4	7	9.0000
[ee	chr5:139028189-139028410(+)$1	221	75	78	9.0000
!!a	chr7:100424796-100425053(-)$1	257	22	25	9.0000
rrr	chrX:119602912-119603219(-)$1	307	12	15	9.0000
{EE	chr17:74733219-74733474(-)$1	255	24	27	9.0000
:DD	chr17:4851604-4851893(-)$1	289	17	20	9.0000
fff	chr9:37465177-37465446(-)$1	269	66	69	9.0000
III	chr6:41755335-41755581(+)$1	246	11	14	9.0000
:a[	chrX:151142893-151143144(-)$1	251	4	7	9.0000
{II	chr12:120907211-120907603(-)$1	392	10	13	9.0000
:::	chr11:77790687-77790940(-)$1	253	60	63	9.0000
ddd	chr8:145747990-145748236(+)$1	246	25	28	9.0000
KEE	chr22:21996519-21996819(+)$1	300	22	25	9.0000
GGG	chr22:18111289-18111597(-)$1	308	161	164	9.0000
fff	chr3:50273566-50273922(+)$1	356	121	124	9.0000
ddd	chr3:184081089-184081332(+)$1	243	4	7	9.0000
:bb	chr11:236898-237244(+)$1	346	0	3	9.0000
:::	chr7:5570089-5570329(-)$1	240	12	15	9.0000
ibb	chr6:10747933-10748215(+)$1	282	93	96	9.0000
ee:	chr5:68389978-68390243(+)$1	265	43	46	9.0000
[cc	chr7:5645688-5645938(+)$1	250	4	7	9.0000
{BB	chrX:152953549-152953891(+)$1	342	3	6	9.0000
[cc	chr11:66384203-66384453(+)$1	250	37	40	9.0000
FFF	chr9:35072266-35072500(-)$1	234	4	7	9.0000
EEE	chr10:75757795-75758075(+)$1	280	36	39	9.0000
GGG	chr1:182360383-182360646(-)$1	263	122	125	9.0000
xxx	chr10:70660988-70661268(+)$1	280	186	189	9.0000
MMM	chr1:113246164-113246408(-)$1	244	6	9	9.0000
LGG	chr3:184032280-184032555(+)$1	275	77	80	9.0000
DDD	chrX:153588654-153588905(-)$1	251	74	77	9.0000
[cc	chr16:2563918-2564199(+)$1	281	56	59	9.0000
bff	chr6:31703976-31704254(-)$1	278	46	49	9.0000
{GG	chr19:11071815-11072101(+)$1	286	59	62	9.0000
lll	chr20:60718165-60718466(-)$1	301	85	88	9.0000
fff	chr6:168227510-168227774(+)$1	264	126	129	9.0000
3dd	chr5:179248512-179248793(+)$1	281	66	69	9.0000
[ii	chr22:41488224-41488488(+)$1	264	25	28	9.0000
!bb	chr17:79876234-79876474(-)$1	240	107	110	9.0000
]bb	chr1:1284443-1284711(-)$1	268	69	72	9.0000
GEE	chr19:1206247-1206494(+)$1	247	31	34	9.0000
dda	chr17:26902343-26902590(-)$1	247	30	33	9.0000
{DD	chr19:40791084-40791368(-)$1	284	81	84	9.0000
"ii	chr4:174254622-174254911(-)$1	289	5	8	9.0000
[bb	chr4:1873070-1873341(+)$1	271	64	67	9.0000
!!f	chr7:150777515-150777787(-)$1	272	53	56	9.0000
J{D	chr9:130953609-130953870(-)$1	261	25	28	9.0000
4bb	chr16:30076984-30077336(+)$1	352	41	44	9.0000
hhh	chr19:42365078-42365327(+)$1	249	12	15	9.0000
[cc	chr1:185125782-185126116(-)$1	334	52	55	9.0000
qqq	chr16:9185412-9185656(+)$1	244	15	18	9.0000
qqq	chr6:109703464-109703718(-)$1	254	43	46	9.0000
CCC	chr10:73610838-73611087(-)$1	249	11	14	9.0000
$bb	chr4:152020677-152020963(+)$1	286	121	124	9.0000
C{B	chr12:53693048-53693304(+)$1	256	2	5	9.0000
ee2	chr4:39459912-39460163(-)$1	251	32	35	9.0000
DDD	chr19:1879458-1879734(-)$1	276	40	43	9.0000
iii	chr6:135502484-135502762(+)$1	278	49	52	9.0000
ndd	chr22:20067972-20068239(+)$1	267	56	59	9.0000
mcc	chr17:7465262-7465530(+)$1	268	107	110	9.0000
FFF	chr5:126112898-126113340(+)$1	442	137	140	9.0000
EKK	chr20:5100427-5100672(-)$1	245	9	12	9.0000
NBB	chr19:18942673-18942951(+)$1	278	31	34	9.0000
$$d	chr19:3094497-3094767(+)$1	270	185	188	9.0000
ccc	chr5:139027947-139028205(+)$1	258	6	9	9.0000
::c	chr12:6643616-6643832(+)$1	216	46	49	9.0000
[bb	chr12:56498270-56498594(+)$1	324	16	19	9.0000
b[c	chr19:39833015-39833302(+)$1	287	60	63	9.0000
fff	chr19:974672-974897(+)$1	225	12	15	9.0000
CCC	chr4:56502329-56502548(-)$1	219	30	33	9.0000
[bb	chr12:56510461-56510675(+)$1	214	49	52	9.0000
ccc	chr17:79479245-79479502(-)$1	257	175	178	9.0000
fff	chr16:88878123-88878416(-)$1	293	122	125	9.0000
rgg	chr12:125478218-125478465(+)$1	247	28	31	9.0000
dd3	chr17:4607138-4607386(-)$1	248	61	64	9.0000
KBB	chr19:42746539-42746800(-)$1	261	9	12	9.0000

#DB
(((	chr1:26232774-26233008(-)$1	1	32	35	9.0000
(((	chr1:17765939-17766170(-)$1	1	34	37	9.0000
(((	chr19:39337856-39338123(-)$1	1	11	14	9.0000
(((	chr9:74979927-74980173(-)$1	1	24	27	9.0000
.((	chr17:49230844-49231122(+)$1	1	24	27	9.0000
.))	chr15:30114169-30114419(-)$1	1	121	124	9.0000
.((	chr1:45285541-45285767(-)$1	1	82	85	9.0000
(((	chr3:180707287-180707604(-)$1	1	10	13	9.0000
.((	chr1:32403510-32403754(-)$1	1	156	159	9.0000
.))	chr9:128003277-128003506(-)$1	1	105	108	9.0000
(((	chr11:770385-770622(-)$1	1	171	174	9.0000
.((	chr8:103424373-103424663(-)$1	1	155	158	9.0000
)))	chr12:6643877-6644083(+)$1	1	96	99	9.0000
((.	chr21:45180506-45180745(+)$1	1	46	49	9.0000
.((	chr16:18812652-18812932(-)$1	1	38	41	9.0000
.((	chr1:29508135-29508431(-)$1	1	1	4	9.0000
.((	chr12:133404825-133405099(-)$1	1	28	31	9.0000
...	chr4:120221569-120221820(-)$1	1	86	89	9.0000
)))	chrX:153580514-153580752(-)$1	1	71	74	9.0000
.((	chr11:66384132-66384376(+)$1	1	108	111	9.0000
...	chr8:27695130-27695403(-)$1	1	32	35	9.0000
(((	chr11:111896093-111896396(+)$1	1	138	141	9.0000
...	chr6:29600521-29600796(-)$1	1	0	3	9.0000
(((	chr8:126010695-126010944(+)$1	1	4	7	9.0000
.((	chr5:139028189-139028410(+)$1	1	75	78	9.0000
..(	chr7:100424796-100425053(-)$1	1	22	25	9.0000
...	chrX:119602912-119603219(-)$1	1	12	15	9.0000
.((	chr17:74733219-74733474(-)$1	1	24	27	9.0000
.((	chr17:4851604-4851893(-)$1	1	17	20	9.0000
)))	chr9:37465177-37465446(-)$1	1	66	69	9.0000
(((	chr6:41755335-41755581(+)$1	1	11	14	9.0000
.(.	chrX:151142893-151143144(-)$1	1	4	7	9.0000
.((	chr12:120907211-120907603(-)$1	1	10	13	9.0000
...	chr11:77790687-77790940(-)$1	1	60	63	9.0000
(((	chr8:145747990-145748236(+)$1	1	25	28	9.0000
.((	chr22:21996519-21996819(+)$1	1	22	25	9.0000
(((	chr22:18111289-18111597(-)$1	1	161	164	9.0000
)))	chr3:50273566-50273922(+)$1	1	121	124	9.0000
(((	chr3:184081089-184081332(+)$1	1	4	7	9.0000
.((	chr11:236898-237244(+)$1	1	0	3	9.0000
...	chr7:5570089-5570329(-)$1	1	12	15	9.0000
(((	chr6:10747933-10748215(+)$1	1	93	96	9.0000
)).	chr5:68389978-68390243(+)$1	1	43	46	9.0000
.((	chr7:5645688-5645938(+)$1	1	4	7	9.0000
.((	chrX:152953549-152953891(+)$1	1	3	6	9.0000
.((	chr11:66384203-66384453(+)$1	1	37	40	9.0000
(((	chr9:35072266-35072500(-)$1	1	4	7	9.0000
(((	chr10:75757795-75758075(+)$1	1	36	39	9.0000
)))	chr1:182360383-182360646(-)$1	1	122	125	9.0000
...	chr10:70660988-70661268(+)$1	1	186	189	9.0000
...	chr1:113246164-113246408(-)$1	1	6	9	9.0000
.((	chr3:184032280-184032555(+)$1	1	77	80	9.0000
(((	chrX:153588654-153588905(-)$1	1	74	77	9.0000
.((	chr16:2563918-2564199(+)$1	1	56	59	9.0000
)))	chr6:31703976-31704254(-)$1	1	46	49	9.0000
.((	chr19:11071815-11072101(+)$1	1	59	62	9.0000
...	chr20:60718165-60718466(-)$1	1	85	88	9.0000
)))	chr6:168227510-168227774(+)$1	1	126	129	9.0000
.))	chr5:179248512-179248793(+)$1	1	66	69	9.0000
.((	chr22:41488224-41488488(+)$1	1	25	28	9.0000
.((	chr17:79876234-79876474(-)$1	1	107	110	9.0000
.))	chr1:1284443-1284711(-)$1	1	69	72	9.0000
(((	chr19:1206247-1206494(+)$1	1	31	34	9.0000
)))	chr17:26902343-26902590(-)$1	1	30	33	9.0000
.((	chr19:40791084-40791368(-)$1	1	81	84	9.0000
.((	chr4:174254622-174254911(-)$1	1	5	8	9.0000
.((	chr4:1873070-1873341(+)$1	1	64	67	9.0000
..(	chr7:150777515-150777787(-)$1	1	53	56	9.0000
(.(	chr9:130953609-130953870(-)$1	1	25	28	9.0000
.))	chr16:30076984-30077336(+)$1	1	41	44	9.0000
(((	chr19:42365078-42365327(+)$1	1	12	15	9.0000
.((	chr1:185125782-185126116(-)$1	1	52	55	9.0000
...	chr16:9185412-9185656(+)$1	1	15	18	9.0000
...	chr6:109703464-109703718(-)$1	1	43	46	9.0000
(((	chr10:73610838-73611087(-)$1	1	11	14	9.0000
.((	chr4:152020677-152020963(+)$1	1	121	124	9.0000
(.(	chr12:53693048-53693304(+)$1	1	2	5	9.0000
)).	chr4:39459912-39460163(-)$1	1	32	35	9.0000
(((	chr19:1879458-1879734(-)$1	1	40	43	9.0000
(((	chr6:135502484-135502762(+)$1	1	49	52	9.0000
.))	chr22:20067972-20068239(+)$1	1	56	59	9.0000
.))	chr17:7465262-7465530(+)$1	1	107	110	9.0000
(((	chr5:126112898-126113340(+)$1	1	137	140	9.0000
(..	chr20:5100427-5100672(-)$1	1	9	12	9.0000
.((	chr19:18942673-18942951(+)$1	1	31	34	9.0000
..(	chr19:3094497-3094767(+)$1	1	185	188	9.0000
(((	chr5:139027947-139028205(+)$1	1	6	9	9.0000
..(	chr12:6643616-6643832(+)$1	1	46	49	9.0000
.((	chr12:56498270-56498594(+)$1	1	16	19	9.0000
(.(	chr19:39833015-39833302(+)$1	1	60	63	9.0000
(((	chr19:974672-974897(+)$1	1	12	15	9.0000
(((	chr4:56502329-56502548(-)$1	1	30	33	9.0000
.((	chr12:56510461-56510675(+)$1	1	49	52	9.0000
(((	chr17:79479245-79479502(-)$1	1	175	178	9.0000
)))	chr16:88878123-88878416(-)$1	1	122	125	9.0000
.))	chr12:125478218-125478465(+)$1	1	28	31	9.0000
)).	chr17:4607138-4607386(-)$1	1	61	64	9.0000
.((	chr19:42746539-42746800(-)$1	1	9	12	9.0000

#PSSM
A : 0.90	a : 0.09	
G : 0.89	g : 0.10	
C : 0.89	c : 0.10	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_CDS_m2_run1.nuc.txt

#NT
GAAGA	chr7:143573479-143573736(-)$1	257	98	103	15.0000
GAAGA	chr19:13034871-13035136(-)$1	265	61	66	15.0000
GAAGA	chr12:50146746-50146965(+)$1	219	33	38	15.0000
GAAGA	chr21:33651008-33651231(-)$1	223	14	19	15.0000
GAAGA	chr9:86586881-86587124(-)$1	243	144	149	15.0000
GAAGA	chr11:46403755-46404013(+)$1	258	95	100	15.0000
GAAGA	chr17:26900396-26900656(-)$1	260	59	64	15.0000
GAAGA	chr16:30078536-30078774(+)$1	238	74	79	15.0000
GAAGA	chr4:76570500-76570926(-)$1	426	76	81	15.0000
GAAGA	chr17:26900456-26900705(-)$1	249	108	113	15.0000
GAAGA	chr8:146015209-146015448(-)$1	239	65	70	15.0000
GAAGA	chr21:33040733-33040988(+)$1	255	89	94	15.0000
GAAGA	chr5:137902610-137902849(-)$1	239	106	111	15.0000
GAAGA	chr10:62545380-62545639(+)$1	259	107	112	15.0000
GAAGA	chr22:29693785-29694041(+)$1	256	74	79	15.0000
GAAGA	chr14:100828028-100828309(-)$1	281	192	197	15.0000
GAAGA	chr22:22892050-22892278(-)$1	228	18	23	15.0000
GAAGA	chr11:18425235-18425458(+)$1	223	45	50	15.0000
GAAGA	chr6:30691118-30691376(+)$1	258	189	194	15.0000
GAAGA	chr11:75111711-75111950(+)$1	239	86	91	15.0000
GAAGA	chr1:201104631-201104898(-)$1	267	71	76	15.0000
GAAGA	chr9:86586522-86586741(-)$1	219	120	125	15.0000
GAAGA	chr19:806373-806636(+)$1	263	220	225	15.0000
GAAGA	chr1:10471372-10471615(+)$1	243	131	136	15.0000
GAAGA	chr1:120254576-120254852(+)$1	276	128	133	15.0000
GAAGA	chr1:173454435-173454691(+)$1	256	85	90	15.0000
GAAGA	chr16:30081337-30081552(+)$1	215	63	68	15.0000
GAAGA	chr15:44085114-44085350(+)$1	236	86	91	15.0000
GAAGA	chr1:8923232-8923464(-)$1	232	123	128	15.0000
GAAGA	chr15:45007529-45007781(+)$1	252	203	208	15.0000
GAAGA	chr12:50146704-50146946(+)$1	242	75	80	15.0000
GAAGA	chr17:57744067-57744316(+)$1	249	123	128	15.0000
GAAGA	chr12:21791249-21791504(-)$1	255	34	39	15.0000
GAAGA	chr9:86586826-86587066(-)$1	240	86	91	15.0000
GAAGA	chr12:98992253-98992506(+)$1	253	211	216	15.0000
GAAGA	chr13:46722384-46722605(-)$1	221	74	79	15.0000
GAAGA	chr1:145440259-145440488(+)$1	229	208	213	15.0000
GAAGA	chr11:118963744-118963994(+)$1	250	78	83	15.0000
GAAGA	chr12:98995147-98995424(+)$1	277	131	136	15.0000
GAAGA	chr1:120284376-120284612(+)$1	236	23	28	15.0000

#otherMatches

#Struct PSSM
EE{EE	chr1:226109818-226110106(-)$1	288	22	27	15.0000
BB{CC	chr7:143573479-143573736(-)$1	257	98	103	15.0000
eeeee	chr19:13034871-13035136(-)$1	265	61	66	15.0000
:::::	chr12:50146746-50146965(+)$1	219	33	38	15.0000
GNNNN	chr21:33651008-33651231(-)$1	223	14	19	15.0000
::::c	chr9:86586881-86587124(-)$1	243	144	149	15.0000
zzzzz	chr11:46403755-46404013(+)$1	258	95	100	15.0000
###dd	chr17:26900396-26900656(-)$1	260	59	64	15.0000
bb[a!	chr16:30078536-30078774(+)$1	238	74	79	15.0000
bJJJJ	chr4:76570500-76570926(-)$1	426	76	81	15.0000
fccc2	chr17:26900456-26900705(-)$1	249	108	113	15.0000
fffff	chr8:146015209-146015448(-)$1	239	65	70	15.0000
DWWWW	chr21:33040733-33040988(+)$1	255	89	94	15.0000
ttttt	chr5:137902610-137902849(-)$1	239	106	111	15.0000
FFFFF	chr10:62545380-62545639(+)$1	259	107	112	15.0000
JJJJJ	chr22:29693785-29694041(+)$1	256	74	79	15.0000
d333c	chr14:100828028-100828309(-)$1	281	192	197	15.0000
b!!bb	chr22:22892050-22892278(-)$1	228	18	23	15.0000
hhh""	chr11:18425235-18425458(+)$1	223	45	50	15.0000
!!bbo	chr6:30691118-30691376(+)$1	258	189	194	15.0000
gg[ee	chr11:75111711-75111950(+)$1	239	86	91	15.0000
eeeee	chr1:201104631-201104898(-)$1	267	71	76	15.0000
::::c	chr9:86586522-86586741(-)$1	219	120	125	15.0000
ddd22	chr19:806373-806636(+)$1	263	220	225	15.0000
dddd2	chr1:10471372-10471615(+)$1	243	131	136	15.0000
cclll	chr1:120254576-120254852(+)$1	276	128	133	15.0000
tttdd	chr1:173454435-173454691(+)$1	256	85	90	15.0000
ooocc	chr16:30081337-30081552(+)$1	215	63	68	15.0000
:::::	chr15:44085114-44085350(+)$1	236	86	91	15.0000
ddggg	chr1:8923232-8923464(-)$1	232	123	128	15.0000
b22a]	chr15:45007529-45007781(+)$1	252	203	208	15.0000
:::::	chr12:50146704-50146946(+)$1	242	75	80	15.0000
]eeee	chr17:57744067-57744316(+)$1	249	123	128	15.0000
=====	chr12:21791249-21791504(-)$1	255	34	39	15.0000
DKKII	chr9:86586826-86587066(-)$1	240	86	91	15.0000
IIII:	chr12:98992253-98992506(+)$1	253	211	216	15.0000
:::::	chr13:46722384-46722605(-)$1	221	74	79	15.0000
eeeep	chr1:145440259-145440488(+)$1	229	208	213	15.0000
!ccc[	chr11:118963744-118963994(+)$1	250	78	83	15.0000
nnnnn	chr12:98995147-98995424(+)$1	277	131	136	15.0000
d::::	chr1:120284376-120284612(+)$1	236	23	28	15.0000

#DB
((.((	chr1:226109818-226110106(-)$1	1	22	27	15.0000
((.((	chr7:143573479-143573736(-)$1	1	98	103	15.0000
)))))	chr19:13034871-13035136(-)$1	1	61	66	15.0000
.....	chr12:50146746-50146965(+)$1	1	33	38	15.0000
(....	chr21:33651008-33651231(-)$1	1	14	19	15.0000
....(	chr9:86586881-86587124(-)$1	1	144	149	15.0000
.....	chr11:46403755-46404013(+)$1	1	95	100	15.0000
...((	chr17:26900396-26900656(-)$1	1	59	64	15.0000
((.(.	chr16:30078536-30078774(+)$1	1	74	79	15.0000
)((((	chr4:76570500-76570926(-)$1	1	76	81	15.0000
)))).	chr17:26900456-26900705(-)$1	1	108	113	15.0000
(((((	chr8:146015209-146015448(-)$1	1	65	70	15.0000
(....	chr21:33040733-33040988(+)$1	1	89	94	15.0000
.....	chr5:137902610-137902849(-)$1	1	106	111	15.0000
(((((	chr10:62545380-62545639(+)$1	1	107	112	15.0000
(((((	chr22:29693785-29694041(+)$1	1	74	79	15.0000
)...)	chr14:100828028-100828309(-)$1	1	192	197	15.0000
(..((	chr22:22892050-22892278(-)$1	1	18	23	15.0000
(((..	chr11:18425235-18425458(+)$1	1	45	50	15.0000
..((.	chr6:30691118-30691376(+)$1	1	189	194	15.0000
((.((	chr11:75111711-75111950(+)$1	1	86	91	15.0000
(((((	chr1:201104631-201104898(-)$1	1	71	76	15.0000
....(	chr9:86586522-86586741(-)$1	1	120	125	15.0000
)))..	chr19:806373-806636(+)$1	1	220	225	15.0000
)))).	chr1:10471372-10471615(+)$1	1	131	136	15.0000
((...	chr1:120254576-120254852(+)$1	1	128	133	15.0000
...))	chr1:173454435-173454691(+)$1	1	85	90	15.0000
...))	chr16:30081337-30081552(+)$1	1	63	68	15.0000
.....	chr15:44085114-44085350(+)$1	1	86	91	15.0000
)))))	chr1:8923232-8923464(-)$1	1	123	128	15.0000
)..).	chr15:45007529-45007781(+)$1	1	203	208	15.0000
.....	chr12:50146704-50146946(+)$1	1	75	80	15.0000
.))))	chr17:57744067-57744316(+)$1	1	123	128	15.0000
(((((	chr12:21791249-21791504(-)$1	1	34	39	15.0000
(..((	chr9:86586826-86587066(-)$1	1	86	91	15.0000
)))).	chr12:98992253-98992506(+)$1	1	211	216	15.0000
.....	chr13:46722384-46722605(-)$1	1	74	79	15.0000
((((.	chr1:145440259-145440488(+)$1	1	208	213	15.0000
.(((.	chr11:118963744-118963994(+)$1	1	78	83	15.0000
.....	chr12:98995147-98995424(+)$1	1	131	136	15.0000
)....	chr1:120284376-120284612(+)$1	1	23	28	15.0000

#PSSM
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	

#score	615.0000000000001
#seq	41
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_transcript_m3_run2.nuc.txt

#NT
AGGGG	chr18:77867151-77867444(+)$1	293	32	37	14.9999
AGGGG	chrM:14303-14506(-)$1	203	11	16	14.9999
AGGGG	chrM:14238-14441(-)$1	203	18	23	14.9999
AGGGG	chr1:156712713-156712993(-)$1	280	133	138	14.9999
AGGGG	chr5:134263317-134263526(+)$1	209	185	190	14.9999
AGGGG	chrM:14241-14448(-)$1	207	25	30	14.9999
AGGGG	chr20:17639585-17639819(-)$1	234	24	29	14.9999
AGGGG	chr12:111180483-111180692(-)$1	209	47	52	14.9999
AGGGG	chr8:144806951-144807204(-)$1	253	10	15	14.9999
AGGGG	chr2:242383835-242384097(+)$1	262	136	141	14.9999
AGGGG	chr2:97482130-97482418(+)$1	288	36	41	14.9999
AGGGG	chr10:135234292-135234590(+)$1	298	2	7	14.9999
AGGGG	chr1:19197959-19198225(-)$1	266	6	11	14.9999
AGGGG	chr9:6645256-6645533(-)$1	277	14	19	14.9999
AGGGG	chr20:17639575-17639785(-)$1	210	51	56	14.9999
AGGGG	chr12:57485408-57485704(+)$1	296	51	56	14.9999
agggg	chr1:154530646-154530918(-)$1	272	125	130	14.9999
AGGGG	chrM:14282-14484(-)$1	202	61	66	14.9999
AGGGG	chr17:61909374-61909702(-)$1	328	69	74	14.9999
AGGGG	chr11:73373088-73373401(+)$1	313	180	185	14.9999
AGGGG	chr19:47506535-47506783(+)$1	248	152	157	14.9999
AGGGG	chrX:48386855-48387136(+)$1	281	125	130	14.9999
AGGGG	chr7:100276491-100276753(+)$1	262	107	112	14.9999
AGGGG	chr1:153932051-153932293(-)$1	242	208	213	14.9999
AGGGG	chr12:56631074-56631356(+)$1	282	256	261	14.9999
AGGGG	chr7:73610747-73610960(+)$1	213	98	103	14.9999
agggg	chr3:186794260-186794497(+)$1	237	172	177	14.9999
AGGGG	chr3:52262560-52262833(-)$1	273	23	28	14.9999
AGGGG	chr3:52290623-52290898(-)$1	275	90	95	14.9999
AGGGG	chr12:120533216-120533483(-)$1	267	54	59	14.9999
AGGGG	chr12:30907397-30907680(-)$1	283	96	101	14.9999
AGGGG	chr16:87865817-87866138(-)$1	321	133	138	14.9999
AGGGG	chr12:132414128-132414429(+)$1	301	11	16	14.9999
AGGGG	chr20:61591501-61591771(+)$1	270	123	128	14.9999
AGGGG	chr16:30535264-30535534(-)$1	270	4	9	14.9999
AGGGG	chr9:5832827-5833095(-)$1	268	251	256	14.9999
AGGGG	chrM:14366-14575(-)$1	209	80	85	14.9999
Agggg	chr14:24616752-24617023(+)$1	271	77	82	14.9999
AGGGG	chr20:17639916-17640162(-)$1	246	7	12	14.9999
agggg	chr9:117029723-117029937(+)$1	214	13	18	14.9999
AGGGG	chr22:19024155-19024475(-)$1	320	102	107	14.9999
AGGGG	chr19:4657702-4657984(-)$1	282	16	21	14.9999
AGGGG	chr9:136627567-136627842(-)$1	275	62	67	14.9999
AGGGG	chr2:241565773-241566079(+)$1	306	150	155	14.9999
AGGGG	chr20:17639348-17639575(-)$1	227	119	124	14.9999
AGGGG	chr19:47505034-47505322(+)$1	288	177	182	14.9999
AGGGG	chr2:27305708-27306009(+)$1	301	146	151	14.9999
AGGGG	chr5:175386965-175387236(-)$1	271	99	104	14.9999
AGGGG	chrM:14284-14486(-)$1	202	63	68	14.9999
agggg	chr4:83294513-83294757(-)$1	244	29	34	14.9999
AGGGG	chr17:38078072-38078330(-)$1	258	172	177	14.9999
AGGGG	chrM:14166-14370(-)$1	204	84	89	14.9999
AGGGG	chr1:29445167-29445476(+)$1	309	78	83	14.9999
AGGGG	chr18:77867065-77867351(+)$1	286	0	5	14.9999
AGGGG	chrM:14190-14398(-)$1	208	112	117	14.9999
AGGGG	chr14:24774564-24774889(+)$1	325	139	144	14.9999
AGGGG	chr1:891202-891429(-)$1	227	132	137	14.9999
AGGGG	chr8:144669919-144670229(-)$1	310	115	120	14.9999
AGGGG	chr4:186124954-186125222(-)$1	268	174	179	14.9999
AGGGG	chr9:136229486-136229720(-)$1	234	48	53	14.9999
AGGGG	chr6:32157481-32157770(-)$1	289	36	41	14.9999
AGGGG	chr12:57587807-57588124(+)$1	317	175	180	14.9999
AGGGG	chr11:125439302-125439569(+)$1	267	131	136	14.9999
AGGGG	chr16:11036118-11036405(-)$1	287	31	36	14.9999
AGGGG	chr2:219139146-219139400(-)$1	254	38	43	14.9999
AGGGG	chr16:72993428-72993719(-)$1	291	30	35	14.9999
AGGGG	chr7:99949472-99949747(+)$1	275	167	172	14.9999
AGGGG	chr17:47439177-47439428(-)$1	251	35	40	14.9999
AGGGG	chr22:39917495-39917738(+)$1	243	224	229	14.9999
AGGGG	chr9:117014778-117015027(+)$1	249	137	142	14.9999
AGGGG	chr19:50361375-50361716(+)$1	341	159	164	14.9999

#otherMatches

#Struct PSSM
nnncc	chr7:157592046-157592282(-)$1	236	16	21	14.9999
JJJJJ	chr18:77867151-77867444(+)$1	293	32	37	14.9999
=====	chrM:14303-14506(-)$1	203	11	16	14.9999
:::::	chrM:14238-14441(-)$1	203	18	23	14.9999
dddda	chr1:156712713-156712993(-)$1	280	133	138	14.9999
qqqqq	chr5:134263317-134263526(+)$1	209	185	190	14.9999
:::::	chrM:14241-14448(-)$1	207	25	30	14.9999
2bb:E	chr20:17639585-17639819(-)$1	234	24	29	14.9999
hh[bb	chr12:111180483-111180692(-)$1	209	47	52	14.9999
:::::	chr8:144806951-144807204(-)$1	253	10	15	14.9999
fffff	chr2:242383835-242384097(+)$1	262	136	141	14.9999
eeebb	chr2:97482130-97482418(+)$1	288	36	41	14.9999
[dddd	chr10:135234292-135234590(+)$1	298	2	7	14.9999
:gggg	chr1:19197959-19198225(-)$1	266	6	11	14.9999
d[eee	chr9:6645256-6645533(-)$1	277	14	19	14.9999
::fff	chr20:17639575-17639785(-)$1	210	51	56	14.9999
fffff	chr12:57485408-57485704(+)$1	296	51	56	14.9999
eeebb	chr1:154530646-154530918(-)$1	272	125	130	14.9999
:::::	chrM:14282-14484(-)$1	202	61	66	14.9999
ggggg	chr17:61909374-61909702(-)$1	328	69	74	14.9999
ggggg	chr11:73373088-73373401(+)$1	313	180	185	14.9999
ff555	chr19:47506535-47506783(+)$1	248	152	157	14.9999
:DDDD	chrX:48386855-48387136(+)$1	281	125	130	14.9999
H{JJJ	chr7:100276491-100276753(+)$1	262	107	112	14.9999
:eeee	chr1:153932051-153932293(-)$1	242	208	213	14.9999
ee:cc	chr12:56631074-56631356(+)$1	282	256	261	14.9999
:::::	chr7:73610747-73610960(+)$1	213	98	103	14.9999
}CCC}	chr3:186794260-186794497(+)$1	237	172	177	14.9999
ccc!!	chr3:52262560-52262833(-)$1	273	23	28	14.9999
&&&&&	chr3:52290623-52290898(-)$1	275	90	95	14.9999
""fff	chr12:120533216-120533483(-)$1	267	54	59	14.9999
4444=	chr12:30907397-30907680(-)$1	283	96	101	14.9999
=====	chr16:87865817-87866138(-)$1	321	133	138	14.9999
!a[dd	chr12:132414128-132414429(+)$1	301	11	16	14.9999
eeeee	chr20:61591501-61591771(+)$1	270	123	128	14.9999
:FFFF	chr16:30535264-30535534(-)$1	270	4	9	14.9999
YYBB}	chr9:5832827-5833095(-)$1	268	251	256	14.9999
=====	chrM:14366-14575(-)$1	209	80	85	14.9999
2eeee	chr14:24616752-24617023(+)$1	271	77	82	14.9999
KBBFF	chr20:17639916-17640162(-)$1	246	7	12	14.9999
fffff	chr9:117029723-117029937(+)$1	214	13	18	14.9999
bb]a]	chr22:19024155-19024475(-)$1	320	102	107	14.9999
KCCCC	chr19:4657702-4657984(-)$1	282	16	21	14.9999
FFFFF	chr9:136627567-136627842(-)$1	275	62	67	14.9999
hhooo	chr2:241565773-241566079(+)$1	306	150	155	14.9999
:eeee	chr20:17639348-17639575(-)$1	227	119	124	14.9999
mhhhh	chr19:47505034-47505322(+)$1	288	177	182	14.9999
mmmme	chr2:27305708-27306009(+)$1	301	146	151	14.9999
mhhhh	chr5:175386965-175387236(-)$1	271	99	104	14.9999
:::::	chrM:14284-14486(-)$1	202	63	68	14.9999
PCCCc	chr4:83294513-83294757(-)$1	244	29	34	14.9999
rriii	chr17:38078072-38078330(-)$1	258	172	177	14.9999
$$a[e	chrM:14166-14370(-)$1	204	84	89	14.9999
qqqqq	chr1:29445167-29445476(+)$1	309	78	83	14.9999
:IIII	chr18:77867065-77867351(+)$1	286	0	5	14.9999
$$a[e	chrM:14190-14398(-)$1	208	112	117	14.9999
FFFFF	chr14:24774564-24774889(+)$1	325	139	144	14.9999
000ee	chr1:891202-891429(-)$1	227	132	137	14.9999
g[amm	chr8:144669919-144670229(-)$1	310	115	120	14.9999
HHHHH	chr4:186124954-186125222(-)$1	268	174	179	14.9999
cc22b	chr9:136229486-136229720(-)$1	234	48	53	14.9999
KBBBB	chr6:32157481-32157770(-)$1	289	36	41	14.9999
}HHHH	chr12:57587807-57588124(+)$1	317	175	180	14.9999
66666	chr11:125439302-125439569(+)$1	267	131	136	14.9999
!bb!!	chr16:11036118-11036405(-)$1	287	31	36	14.9999
DD::b	chr2:219139146-219139400(-)$1	254	38	43	14.9999
HHHHH	chr16:72993428-72993719(-)$1	291	30	35	14.9999
iiiii	chr7:99949472-99949747(+)$1	275	167	172	14.9999
{JJJJ	chr17:47439177-47439428(-)$1	251	35	40	14.9999
ZZZGG	chr22:39917495-39917738(+)$1	243	224	229	14.9999
lleee	chr9:117014778-117015027(+)$1	249	137	142	14.9999
$$$ff	chr19:50361375-50361716(+)$1	341	159	164	14.9999

#DB
...))	chr7:157592046-157592282(-)$1	1	16	21	14.9999
(((((	chr18:77867151-77867444(+)$1	1	32	37	14.9999
(((((	chrM:14303-14506(-)$1	1	11	16	14.9999
.....	chrM:14238-14441(-)$1	1	18	23	14.9999
)))))	chr1:156712713-156712993(-)$1	1	133	138	14.9999
.....	chr5:134263317-134263526(+)$1	1	185	190	14.9999
.....	chrM:14241-14448(-)$1	1	25	30	14.9999
.)).(	chr20:17639585-17639819(-)$1	1	24	29	14.9999
((.((	chr12:111180483-111180692(-)$1	1	47	52	14.9999
.....	chr8:144806951-144807204(-)$1	1	10	15	14.9999
(((((	chr2:242383835-242384097(+)$1	1	136	141	14.9999
(((((	chr2:97482130-97482418(+)$1	1	36	41	14.9999
.((((	chr10:135234292-135234590(+)$1	1	2	7	14.9999
.((((	chr1:19197959-19198225(-)$1	1	6	11	14.9999
(.(((	chr9:6645256-6645533(-)$1	1	14	19	14.9999
..(((	chr20:17639575-17639785(-)$1	1	51	56	14.9999
(((((	chr12:57485408-57485704(+)$1	1	51	56	14.9999
(((((	chr1:154530646-154530918(-)$1	1	125	130	14.9999
.....	chrM:14282-14484(-)$1	1	61	66	14.9999
)))))	chr17:61909374-61909702(-)$1	1	69	74	14.9999
(((((	chr11:73373088-73373401(+)$1	1	180	185	14.9999
))...	chr19:47506535-47506783(+)$1	1	152	157	14.9999
.((((	chrX:48386855-48387136(+)$1	1	125	130	14.9999
(.(((	chr7:100276491-100276753(+)$1	1	107	112	14.9999
.((((	chr1:153932051-153932293(-)$1	1	208	213	14.9999
)).((	chr12:56631074-56631356(+)$1	1	256	261	14.9999
.....	chr7:73610747-73610960(+)$1	1	98	103	14.9999
.))).	chr3:186794260-186794497(+)$1	1	172	177	14.9999
(((..	chr3:52262560-52262833(-)$1	1	23	28	14.9999
.....	chr3:52290623-52290898(-)$1	1	90	95	14.9999
..(((	chr12:120533216-120533483(-)$1	1	54	59	14.9999
....)	chr12:30907397-30907680(-)$1	1	96	101	14.9999
(((((	chr16:87865817-87866138(-)$1	1	133	138	14.9999
.(.((	chr12:132414128-132414429(+)$1	1	11	16	14.9999
(((((	chr20:61591501-61591771(+)$1	1	123	128	14.9999
.((((	chr16:30535264-30535534(-)$1	1	4	9	14.9999
..)).	chr9:5832827-5833095(-)$1	1	251	256	14.9999
(((((	chrM:14366-14575(-)$1	1	80	85	14.9999
.))))	chr14:24616752-24617023(+)$1	1	77	82	14.9999
.((((	chr20:17639916-17640162(-)$1	1	7	12	14.9999
(((((	chr9:117029723-117029937(+)$1	1	13	18	14.9999
)).).	chr22:19024155-19024475(-)$1	1	102	107	14.9999
.((((	chr19:4657702-4657984(-)$1	1	16	21	14.9999
(((((	chr9:136627567-136627842(-)$1	1	62	67	14.9999
((...	chr2:241565773-241566079(+)$1	1	150	155	14.9999
.((((	chr20:17639348-17639575(-)$1	1	119	124	14.9999
.))))	chr19:47505034-47505322(+)$1	1	177	182	14.9999
....)	chr2:27305708-27306009(+)$1	1	146	151	14.9999
.))))	chr5:175386965-175387236(-)$1	1	99	104	14.9999
.....	chrM:14284-14486(-)$1	1	63	68	14.9999
.((((	chr4:83294513-83294757(-)$1	1	29	34	14.9999
..)))	chr17:38078072-38078330(-)$1	1	172	177	14.9999
..(.(	chrM:14166-14370(-)$1	1	84	89	14.9999
.....	chr1:29445167-29445476(+)$1	1	78	83	14.9999
.((((	chr18:77867065-77867351(+)$1	1	0	5	14.9999
..(.(	chrM:14190-14398(-)$1	1	112	117	14.9999
(((((	chr14:24774564-24774889(+)$1	1	139	144	14.9999
...))	chr1:891202-891429(-)$1	1	132	137	14.9999
(.(..	chr8:144669919-144670229(-)$1	1	115	120	14.9999
)))))	chr4:186124954-186125222(-)$1	1	174	179	14.9999
))..)	chr9:136229486-136229720(-)$1	1	48	53	14.9999
.((((	chr6:32157481-32157770(-)$1	1	36	41	14.9999
.))))	chr12:57587807-57588124(+)$1	1	175	180	14.9999
.....	chr11:125439302-125439569(+)$1	1	131	136	14.9999
.((..	chr16:11036118-11036405(-)$1	1	31	36	14.9999
((..(	chr2:219139146-219139400(-)$1	1	38	43	14.9999
(((((	chr16:72993428-72993719(-)$1	1	30	35	14.9999
(((((	chr7:99949472-99949747(+)$1	1	167	172	14.9999
.((((	chr17:47439177-47439428(-)$1	1	35	40	14.9999
...))	chr22:39917495-39917738(+)$1	1	224	229	14.9999
..)))	chr9:117014778-117015027(+)$1	1	137	142	14.9999
...((	chr19:50361375-50361716(+)$1	1	159	164	14.9999

#PSSM
A : 0.94	a : 0.05	
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	

#score	1079.9999999999995
#seq	72
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_transcript_m3_run1.nuc.txt

#NT
GGGUGGGG	chr19:13946947-13947179(-)$1	232	186	194	21.2413
GGGUGGGG	chr6:4777317-4777607(+)$1	290	76	84	21.2413
GGGUGGGG	chr19:47729520-47729779(-)$1	259	97	105	21.2413
GGGUGGGG	chr2:240287149-240287385(-)$1	236	215	223	21.2413
GGGUGggg	chr1:52195410-52195765(+)$1	355	65	73	21.2413
gggugggg	chr8:128749866-128750126(+)$1	260	64	72	21.2413
GGGCGGGG	chr1:116915775-116916028(+)$1	253	34	42	17.3620
gggagggg	chr11:64121848-64122106(+)$1	258	111	119	17.1896
gggugggg	chr17:37824310-37824620(+)$1	310	104	112	21.2413
GGGUUGGG	chr17:76113592-76113869(-)$1	277	29	37	16.8448
GGCUGGGG	chr3:33138376-33138676(-)$1	300	235	243	17.2758
GGGUGGGG	chr7:100172720-100172951(-)$1	231	100	108	21.2413
GGGUGGGG	chr21:9925250-9925521(-)$1	271	121	129	21.2413
gggUGGGC	chr7:150756702-150756946(+)$1	244	52	60	17.0172
GGGUUGGG	chr17:56408707-56408912(-)$1	205	130	138	16.8448
GGGUGGGG	chr2:196522189-196522410(+)$1	221	172	180	21.2413
UGGUGGGG	chr22:32022326-32022626(-)$1	300	104	112	17.2758
UGGUGGGG	chr7:2027796-2028071(-)$1	275	67	75	17.2758
GGGUGGGG	chr19:4065984-4066246(-)$1	262	96	104	21.2413
GGCUGGGG	chr10:6206016-6206305(+)$1	289	144	152	17.2758
GGGUGGGG	chr19:4034913-4035224(+)$1	311	121	129	21.2413
GGGUUGGG	chr14:105625521-105625760(-)$1	239	93	101	16.8448
GGUUGGGG	chr11:504586-504866(-)$1	280	186	194	17.0172
UGGUGGGG	chr11:637279-637579(+)$1	300	137	145	17.2758
GGGUGGGG	chr1:36788270-36788522(+)$1	252	95	103	21.2413
GGGCGGGG	chr18:9475519-9475795(+)$1	276	33	41	17.3620
GGGUGGGC	chr11:2001093-2001370(+)$1	277	106	114	17.0172
GGGCGGGG	chr19:49841359-49841605(-)$1	246	72	80	17.3620
GGUUGGGG	chr12:122620179-122620427(+)$1	248	56	64	17.0172
GGCUGGGG	chr17:56408571-56408773(-)$1	202	23	31	17.2758
GGGAGGGG	chr16:88542860-88543130(+)$1	270	28	36	17.1896
GGGUGGGG	chr9:139565213-139565479(+)$1	266	140	148	21.2413
gggugggg	chr2:183902880-183903179(-)$1	299	93	101	21.2413
GGGCGGGG	chr11:64879696-64879974(+)$1	278	90	98	17.3620
GGGUGGGG	chr2:62932874-62933162(+)$1	288	76	84	21.2413
UGGUGGGG	chr1:1561342-1561642(+)$1	300	76	84	17.2758
GGGUGGGC	chr9:96928496-96928778(+)$1	282	236	244	17.0172
UGGUGGGG	chr16:19718770-19719063(-)$1	293	41	49	17.2758
gggagggg	chr19:14201086-14201402(-)$1	316	106	114	17.1896
GGGCGGGG	chr15:59949504-59949768(-)$1	264	4	12	17.3620
ggcugggg	chr13:114864950-114865207(-)$1	257	76	84	17.2758
GGGUGGGG	chr9:35731969-35732222(-)$1	253	19	27	21.2413
GGGUGGGC	chr4:1222941-1223192(-)$1	251	53	61	17.0172
GGGUGGGG	chr2:220403021-220403378(+)$1	357	87	95	21.2413
GGGUGGGU	chr9:111808283-111808568(-)$1	285	123	131	16.7586
GGGUGGGG	chr3:47421686-47421940(-)$1	254	100	108	21.2413
AGGUGGGG	chr19:2135719-2135990(-)$1	271	30	38	17.0172
GGGUGGGG	chr7:45039985-45040270(+)$1	285	37	45	21.2413
GGGUGGGG	chr9:123631026-123631310(-)$1	284	31	39	21.2413
gggucggg	chr8:25315435-25315738(-)$1	303	57	65	16.6724
GGGUGGGG	chr14:105249948-105250197(-)$1	249	59	67	21.2413
AGGUGGGG	chr19:18538786-18539043(+)$1	257	71	79	17.0172
GGCUGGGG	chr1:248020654-248020898(+)$1	244	144	152	17.2758
GGGUGGGG	chr16:30935310-30935586(+)$1	276	100	108	21.2413
GGGUGGGG	chr3:197024741-197025018(-)$1	277	87	95	21.2413
GGGUGGGG	chr12:132392369-132392600(+)$1	231	140	148	21.2413
ggguggcg	chr19:3672952-3673206(-)$1	254	10	18	16.4137

#otherMatches

#Struct PSSM
========	chr3:38496988-38497236(+)$1	248	20	28	21.2413
eeee[bbn	chr19:13946947-13947179(-)$1	232	186	194	21.2413
ffff::HH	chr6:4777317-4777607(+)$1	290	76	84	21.2413
gggggga[	chr19:47729520-47729779(-)$1	259	97	105	21.2413
gggggggg	chr2:240287149-240287385(-)$1	236	215	223	21.2413
cc[bb"""	chr1:52195410-52195765(+)$1	355	65	73	21.2413
rrrrrrrr	chr8:128749866-128750126(+)$1	260	64	72	21.2413
]a]eeeee	chr1:116915775-116916028(+)$1	253	34	42	17.3620
mmmmdddd	chr11:64121848-64122106(+)$1	258	111	119	17.1896
lccc5555	chr17:37824310-37824620(+)$1	310	104	112	21.2413
:::::EEE	chr17:76113592-76113869(-)$1	277	29	37	16.8448
eeeeeooo	chr3:33138376-33138676(-)$1	300	235	243	17.2758
ffffffee	chr7:100172720-100172951(-)$1	231	100	108	21.2413
:eeeee[b	chr21:9925250-9925521(-)$1	271	121	129	21.2413
e[a"""bb	chr7:150756702-150756946(+)$1	244	52	60	17.0172
eeeeennn	chr17:56408707-56408912(-)$1	205	130	138	16.8448
[eeeeeqq	chr2:196522189-196522410(+)$1	221	172	180	21.2413
:ffffff[	chr22:32022326-32022626(-)$1	300	104	112	17.2758
eee:FFFF	chr7:2027796-2028071(-)$1	275	67	75	17.2758
{FFFFFF{	chr19:4065984-4066246(-)$1	262	96	104	21.2413
gg]eeeee	chr10:6206016-6206305(+)$1	289	144	152	17.2758
iiiiiiii	chr19:4034913-4035224(+)$1	311	121	129	21.2413
hhhhhhh]	chr14:105625521-105625760(-)$1	239	93	101	16.8448
eeemmmme	chr11:504586-504866(-)$1	280	186	194	17.0172
=======[	chr11:637279-637579(+)$1	300	137	145	17.2758
dddddddd	chr1:36788270-36788522(+)$1	252	95	103	21.2413
dddeeeee	chr18:9475519-9475795(+)$1	276	33	41	17.3620
nnnnhhhh	chr11:2001093-2001370(+)$1	277	106	114	17.0172
eeee333g	chr19:49841359-49841605(-)$1	246	72	80	17.3620
ffff!!dd	chr12:122620179-122620427(+)$1	248	56	64	17.0172
fffff[cc	chr17:56408571-56408773(-)$1	202	23	31	17.2758
MMMMDDDD	chr16:88542860-88543130(+)$1	270	28	36	17.1896
eeee[a[a	chr9:139565213-139565479(+)$1	266	140	148	21.2413
:EEEEE}E	chr2:183902880-183903179(-)$1	299	93	101	21.2413
mmmdddd3	chr11:64879696-64879974(+)$1	278	90	98	17.3620
bb[bbnnn	chr2:62932874-62933162(+)$1	288	76	84	21.2413
::::::::	chr1:1561342-1561642(+)$1	300	76	84	17.2758
JJJJJJJJ	chr9:96928496-96928778(+)$1	282	236	244	17.0172
'''''a[a	chr16:19718770-19719063(-)$1	293	41	49	17.2758
CBB{EEEE	chr19:14201086-14201402(-)$1	316	106	114	17.1896
Eggggggg	chr15:59949504-59949768(-)$1	264	4	12	17.3620
hhhhhh""	chr13:114864950-114865207(-)$1	257	76	84	17.2758
{BBeeeee	chr9:35731969-35732222(-)$1	253	19	27	21.2413
f[ddddoo	chr4:1222941-1223192(-)$1	251	53	61	17.0172
DDDDKKHH	chr2:220403021-220403378(+)$1	357	87	95	21.2413
=======]	chr9:111808283-111808568(-)$1	285	123	131	16.7586
fffff%%%	chr3:47421686-47421940(-)$1	254	100	108	21.2413
qccc]ahh	chr19:2135719-2135990(-)$1	271	30	38	17.0172
DDDDIIII	chr7:45039985-45040270(+)$1	285	37	45	21.2413
eeeellle	chr9:123631026-123631310(-)$1	284	31	39	21.2413
HHHHHNNN	chr8:25315435-25315738(-)$1	303	57	65	16.6724
:=======	chr14:105249948-105250197(-)$1	249	59	67	21.2413
!bb[hhhh	chr19:18538786-18539043(+)$1	257	71	79	17.0172
fffff]gg	chr1:248020654-248020898(+)$1	244	144	152	17.2758
###dddd[	chr16:30935310-30935586(+)$1	276	100	108	21.2413
FFF{EEEE	chr3:197024741-197025018(-)$1	277	87	95	21.2413
g:bb[bb[	chr12:132392369-132392600(+)$1	231	140	148	21.2413
:BB{BB{E	chr19:3672952-3673206(-)$1	254	10	18	16.4137

#DB
((((((((	chr3:38496988-38497236(+)$1	1	20	28	21.2413
((((.((.	chr19:13946947-13947179(-)$1	1	186	194	21.2413
))))..((	chr6:4777317-4777607(+)$1	1	76	84	21.2413
(((((((.	chr19:47729520-47729779(-)$1	1	97	105	21.2413
))))))))	chr2:240287149-240287385(-)$1	1	215	223	21.2413
((.((...	chr1:52195410-52195765(+)$1	1	65	73	21.2413
........	chr8:128749866-128750126(+)$1	1	64	72	21.2413
.).)))))	chr1:116915775-116916028(+)$1	1	34	42	17.3620
....))))	chr11:64121848-64122106(+)$1	1	111	119	17.1896
.)))....	chr17:37824310-37824620(+)$1	1	104	112	21.2413
.....(((	chr17:76113592-76113869(-)$1	1	29	37	16.8448
(((((...	chr3:33138376-33138676(-)$1	1	235	243	17.2758
((((((((	chr7:100172720-100172951(-)$1	1	100	108	21.2413
.(((((.(	chr21:9925250-9925521(-)$1	1	121	129	21.2413
(.(...((	chr7:150756702-150756946(+)$1	1	52	60	17.0172
(((((...	chr17:56408707-56408912(-)$1	1	130	138	16.8448
.(((((..	chr2:196522189-196522410(+)$1	1	172	180	21.2413
.((((((.	chr22:32022326-32022626(-)$1	1	104	112	17.2758
))).((((	chr7:2027796-2028071(-)$1	1	67	75	17.2758
.((((((.	chr19:4065984-4066246(-)$1	1	96	104	21.2413
)).)))))	chr10:6206016-6206305(+)$1	1	144	152	17.2758
))))))))	chr19:4034913-4035224(+)$1	1	121	129	21.2413
))))))).	chr14:105625521-105625760(-)$1	1	93	101	16.8448
(((....)	chr11:504586-504866(-)$1	1	186	194	17.0172
(((((((.	chr11:637279-637579(+)$1	1	137	145	17.2758
))))((((	chr1:36788270-36788522(+)$1	1	95	103	21.2413
))))))))	chr18:9475519-9475795(+)$1	1	33	41	17.3620
....))))	chr11:2001093-2001370(+)$1	1	106	114	17.0172
))))...)	chr19:49841359-49841605(-)$1	1	72	80	17.3620
((((..((	chr12:122620179-122620427(+)$1	1	56	64	17.0172
(((((.((	chr17:56408571-56408773(-)$1	1	23	31	17.2758
....((((	chr16:88542860-88543130(+)$1	1	28	36	17.1896
((((.(.(	chr9:139565213-139565479(+)$1	1	140	148	21.2413
.))))).)	chr2:183902880-183903179(-)$1	1	93	101	21.2413
...)))).	chr11:64879696-64879974(+)$1	1	90	98	17.3620
((.((...	chr2:62932874-62933162(+)$1	1	76	84	21.2413
........	chr1:1561342-1561642(+)$1	1	76	84	17.2758
))))))))	chr9:96928496-96928778(+)$1	1	236	244	17.0172
.....(.(	chr16:19718770-19719063(-)$1	1	41	49	17.2758
(((.((((	chr19:14201086-14201402(-)$1	1	106	114	17.1896
((((((((	chr15:59949504-59949768(-)$1	1	4	12	17.3620
((((((..	chr13:114864950-114865207(-)$1	1	76	84	17.2758
.(((((((	chr9:35731969-35732222(-)$1	1	19	27	21.2413
(.((((..	chr4:1222941-1223192(-)$1	1	53	61	17.0172
((((..((	chr2:220403021-220403378(+)$1	1	87	95	21.2413
))))))).	chr9:111808283-111808568(-)$1	1	123	131	16.7586
(((((...	chr3:47421686-47421940(-)$1	1	100	108	21.2413
.))).)))	chr19:2135719-2135990(-)$1	1	30	38	17.0172
((((((((	chr7:45039985-45040270(+)$1	1	37	45	21.2413
((((...)	chr9:123631026-123631310(-)$1	1	31	39	21.2413
(((((...	chr8:25315435-25315738(-)$1	1	57	65	16.6724
.(((((((	chr14:105249948-105250197(-)$1	1	59	67	21.2413
.((.((((	chr19:18538786-18539043(+)$1	1	71	79	17.0172
))))).))	chr1:248020654-248020898(+)$1	1	144	152	17.2758
...((((.	chr16:30935310-30935586(+)$1	1	100	108	21.2413
(((.((((	chr3:197024741-197025018(-)$1	1	87	95	21.2413
).((.((.	chr12:132392369-132392600(+)$1	1	140	148	21.2413
.((.((.(	chr19:3672952-3673206(-)$1	1	10	18	16.4137

#PSSM
G : 0.72	g : 0.15	U : 0.08	A : 0.03	
G : 0.84	g : 0.15	
G : 0.74	g : 0.13	C : 0.06	U : 0.03	c : 0.01	
U : 0.75	u : 0.10	C : 0.08	a : 0.03	A : 0.01	
G : 0.81	g : 0.12	U : 0.05	c : 0.01	
G : 0.84	g : 0.15	
G : 0.84	g : 0.13	c : 0.01	
G : 0.75	g : 0.15	C : 0.06	U : 0.01	

#score	1099.9310344827595
#seq	58
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_transcript_m3_run2.nuc.txt

#NT
auuuu	chr9:136801636-136801898(-)$1	262	207	212	14.9999
AUUUU	chr11:62619704-62620014(-)$1	310	43	48	14.9999
AUUUU	chr5:74016886-74017188(+)$1	302	162	167	14.9999
AUUUU	chr10:27828460-27828759(+)$1	299	229	234	14.9999
AUUUU	chr14:74429944-74430234(-)$1	290	216	221	14.9999
AUUUU	chr9:117071529-117071789(+)$1	260	175	180	14.9999
AUUUU	chr16:74907463-74907693(-)$1	230	135	140	14.9999
AUUUU	chr3:49052862-49053110(+)$1	248	81	86	14.9999
AUUUU	chr18:72188105-72188434(+)$1	329	146	151	14.9999
AUUUU	chrX:17772715-17772969(+)$1	254	18	23	14.9999
AUUUU	chr1:234742452-234742772(-)$1	320	15	20	14.9999
AUUUU	chr3:140698365-140698617(+)$1	252	38	43	14.9999
AUUUU	chrX:23804118-23804382(+)$1	264	224	229	14.9999
AUUUU	chrY:15032050-15032337(+)$1	287	96	101	14.9999
AUUUU	chr2:58386413-58386673(-)$1	260	113	118	14.9999
AUUUU	chr4:108534742-108534991(-)$1	249	16	21	14.9999
AUUUU	chr1:21069176-21069401(-)$1	225	191	196	14.9999
AUUUU	chr2:70508161-70508405(+)$1	244	107	112	14.9999
AUUUU	chr5:96110126-96110391(-)$1	265	3	8	14.9999
AUUUU	chr3:50156210-50156482(+)$1	272	118	123	14.9999
AUUUU	chr5:73923264-73923529(-)$1	265	210	215	14.9999
AUUUU	chr1:21069237-21069498(-)$1	261	24	29	14.9999
AUUUU	chr19:1435302-1435542(+)$1	240	23	28	14.9999
AUUUU	chr2:70439025-70439272(-)$1	247	159	164	14.9999
AUUUU	chr17:79524224-79524496(-)$1	272	171	176	14.9999
AUUUU	chr3:48674257-48674527(-)$1	270	87	92	14.9999
auuuu	chr16:11939203-11939506(-)$1	303	69	74	14.9999
AUUUU	chr22:29696253-29696541(+)$1	288	28	33	14.9999
AUUUU	chr7:128411344-128411588(+)$1	244	99	104	14.9999
AUUUU	chr5:70954305-70954612(+)$1	307	247	252	14.9999
AUUUU	chr2:64120004-64120237(-)$1	233	152	157	14.9999
auuuu	chr14:24910313-24910580(+)$1	267	78	83	14.9999
AUUUU	chr9:117074324-117074555(+)$1	231	50	55	14.9999
AUUUU	chr2:177202329-177202620(+)$1	291	28	33	14.9999
AUUUU	chr11:130013475-130013707(+)$1	232	211	216	14.9999
AUUUU	chr16:11844479-11844746(-)$1	267	31	36	14.9999
auuuu	chrX:17772842-17773111(+)$1	269	225	230	14.9999
AUUUU	chr7:45932705-45932963(+)$1	258	157	162	14.9999
AUUUU	chr1:234742587-234742823(-)$1	236	66	71	14.9999
AUUUU	chr14:75548810-75549104(-)$1	294	76	81	14.9999
AUUUU	chr5:130977487-130977789(-)$1	302	29	34	14.9999
AUUUU	chr19:7116041-7116290(-)$1	249	242	247	14.9999
auuuu	chr12:7032380-7032632(+)$1	252	88	93	14.9999
AUUUU	chr1:11903014-11903267(+)$1	253	73	78	14.9999
AUUUU	chr7:47314674-47314927(-)$1	253	40	45	14.9999
AUUUU	chr12:48366791-48367075(-)$1	284	275	280	14.9999
AUUUU	chr19:55692666-55692952(-)$1	286	198	203	14.9999
auuuu	chr19:2273160-2273399(+)$1	239	158	163	14.9999
AUUUU	chr21:34949422-34949690(+)$1	268	124	129	14.9999
AUUUU	chr11:34493278-34493562(+)$1	284	104	109	14.9999
auuuu	chr22:44347131-44347425(+)$1	294	107	112	14.9999
auuuu	chr3:41255505-41255799(+)$1	294	272	277	14.9999
AUUUU	chr3:53899378-53899665(+)$1	287	75	80	14.9999
AUUUU	chr1:110566199-110566444(+)$1	245	75	80	14.9999
AUUUU	chr15:73852665-73852910(-)$1	245	97	102	14.9999
AUUUU	chr17:2284131-2284392(+)$1	261	156	161	14.9999
AUUUU	chr2:231743797-231744043(+)$1	246	103	108	14.9999
AUUUU	chr12:103232361-103232575(-)$1	214	58	63	14.9999
AUUUU	chr1:1287995-1288311(-)$1	316	234	239	14.9999
AUUUU	chr14:81939181-81939495(-)$1	314	90	95	14.9999
auuuu	chr14:23780771-23781034(+)$1	263	80	85	14.9999
AUUUU	chr16:18816315-18816558(-)$1	243	6	11	14.9999

#otherMatches

#Struct PSSM
:DDDD	chr20:45838042-45838345(-)$1	303	92	97	14.9999
eee[c	chr9:136801636-136801898(-)$1	262	207	212	14.9999
EVVVV	chr11:62619704-62620014(-)$1	310	43	48	14.9999
gggg[	chr5:74016886-74017188(+)$1	302	162	167	14.9999
hhhhq	chr10:27828460-27828759(+)$1	299	229	234	14.9999
::eee	chr14:74429944-74430234(-)$1	290	216	221	14.9999
^^^^^	chr9:117071529-117071789(+)$1	260	175	180	14.9999
:::::	chr16:74907463-74907693(-)$1	230	135	140	14.9999
bb[bb	chr3:49052862-49053110(+)$1	248	81	86	14.9999
doooo	chr18:72188105-72188434(+)$1	329	146	151	14.9999
:::::	chrX:17772715-17772969(+)$1	254	18	23	14.9999
ODDDD	chr1:234742452-234742772(-)$1	320	15	20	14.9999
c!!bb	chr3:140698365-140698617(+)$1	252	38	43	14.9999
^^^^^	chrX:23804118-23804382(+)$1	264	224	229	14.9999
h%%%%	chrY:15032050-15032337(+)$1	287	96	101	14.9999
%====	chr2:58386413-58386673(-)$1	260	113	118	14.9999
FKKGG	chr4:108534742-108534991(-)$1	249	16	21	14.9999
cc]hh	chr1:21069176-21069401(-)$1	225	191	196	14.9999
9999d	chr2:70508161-70508405(+)$1	244	107	112	14.9999
:::::	chr5:96110126-96110391(-)$1	265	3	8	14.9999
b::::	chr3:50156210-50156482(+)$1	272	118	123	14.9999
77777	chr5:73923264-73923529(-)$1	265	210	215	14.9999
dpppp	chr1:21069237-21069498(-)$1	261	24	29	14.9999
GGGGG	chr19:1435302-1435542(+)$1	240	23	28	14.9999
d22cc	chr2:70439025-70439272(-)$1	247	159	164	14.9999
tttff	chr17:79524224-79524496(-)$1	272	171	176	14.9999
::::h	chr3:48674257-48674527(-)$1	270	87	92	14.9999
::fff	chr16:11939203-11939506(-)$1	303	69	74	14.9999
[hhhh	chr22:29696253-29696541(+)$1	288	28	33	14.9999
FF{GG	chr7:128411344-128411588(+)$1	244	99	104	14.9999
ddd22	chr5:70954305-70954612(+)$1	307	247	252	14.9999
iiiff	chr2:64120004-64120237(-)$1	233	152	157	14.9999
2iiii	chr14:24910313-24910580(+)$1	267	78	83	14.9999
ggggg	chr9:117074324-117074555(+)$1	231	50	55	14.9999
A{CCC	chr2:177202329-177202620(+)$1	291	28	33	14.9999
:::CC	chr11:130013475-130013707(+)$1	232	211	216	14.9999
EE{GG	chr16:11844479-11844746(-)$1	267	31	36	14.9999
ccc]h	chrX:17772842-17773111(+)$1	269	225	230	14.9999
^^^^^	chr7:45932705-45932963(+)$1	258	157	162	14.9999
###dd	chr1:234742587-234742823(-)$1	236	66	71	14.9999
=====	chr14:75548810-75549104(-)$1	294	76	81	14.9999
iii^^	chr5:130977487-130977789(-)$1	302	29	34	14.9999
:::::	chr19:7116041-7116290(-)$1	249	242	247	14.9999
:::::	chr12:7032380-7032632(+)$1	252	88	93	14.9999
ggggg	chr1:11903014-11903267(+)$1	253	73	78	14.9999
d[eee	chr7:47314674-47314927(-)$1	253	40	45	14.9999
:::::	chr12:48366791-48367075(-)$1	284	275	280	14.9999
:::::	chr19:55692666-55692952(-)$1	286	198	203	14.9999
fffff	chr19:2273160-2273399(+)$1	239	158	163	14.9999
fffff	chr21:34949422-34949690(+)$1	268	124	129	14.9999
iiiii	chr11:34493278-34493562(+)$1	284	104	109	14.9999
JJJJJ	chr22:44347131-44347425(+)$1	294	107	112	14.9999
JJJJJ	chr3:41255505-41255799(+)$1	294	272	277	14.9999
ggggg	chr3:53899378-53899665(+)$1	287	75	80	14.9999
hhhhh	chr1:110566199-110566444(+)$1	245	75	80	14.9999
:::::	chr15:73852665-73852910(-)$1	245	97	102	14.9999
[ffff	chr17:2284131-2284392(+)$1	261	156	161	14.9999
eeee0	chr2:231743797-231744043(+)$1	246	103	108	14.9999
ee:::	chr12:103232361-103232575(-)$1	214	58	63	14.9999
xxxxx	chr1:1287995-1288311(-)$1	316	234	239	14.9999
=====	chr14:81939181-81939495(-)$1	314	90	95	14.9999
ffff[	chr14:23780771-23781034(+)$1	263	80	85	14.9999
:::::	chr16:18816315-18816558(-)$1	243	6	11	14.9999

#DB
.((((	chr20:45838042-45838345(-)$1	1	92	97	14.9999
(((.(	chr9:136801636-136801898(-)$1	1	207	212	14.9999
(....	chr11:62619704-62620014(-)$1	1	43	48	14.9999
((((.	chr5:74016886-74017188(+)$1	1	162	167	14.9999
((((.	chr10:27828460-27828759(+)$1	1	229	234	14.9999
..(((	chr14:74429944-74430234(-)$1	1	216	221	14.9999
.....	chr9:117071529-117071789(+)$1	1	175	180	14.9999
.....	chr16:74907463-74907693(-)$1	1	135	140	14.9999
((.((	chr3:49052862-49053110(+)$1	1	81	86	14.9999
(....	chr18:72188105-72188434(+)$1	1	146	151	14.9999
.....	chrX:17772715-17772969(+)$1	1	18	23	14.9999
.((((	chr1:234742452-234742772(-)$1	1	15	20	14.9999
(..((	chr3:140698365-140698617(+)$1	1	38	43	14.9999
.....	chrX:23804118-23804382(+)$1	1	224	229	14.9999
(....	chrY:15032050-15032337(+)$1	1	96	101	14.9999
.((((	chr2:58386413-58386673(-)$1	1	113	118	14.9999
(..((	chr4:108534742-108534991(-)$1	1	16	21	14.9999
)).))	chr1:21069176-21069401(-)$1	1	191	196	14.9999
....)	chr2:70508161-70508405(+)$1	1	107	112	14.9999
.....	chr5:96110126-96110391(-)$1	1	3	8	14.9999
)....	chr3:50156210-50156482(+)$1	1	118	123	14.9999
.....	chr5:73923264-73923529(-)$1	1	210	215	14.9999
(....	chr1:21069237-21069498(-)$1	1	24	29	14.9999
(((((	chr19:1435302-1435542(+)$1	1	23	28	14.9999
)..))	chr2:70439025-70439272(-)$1	1	159	164	14.9999
...))	chr17:79524224-79524496(-)$1	1	171	176	14.9999
....(	chr3:48674257-48674527(-)$1	1	87	92	14.9999
..(((	chr16:11939203-11939506(-)$1	1	69	74	14.9999
.((((	chr22:29696253-29696541(+)$1	1	28	33	14.9999
((.((	chr7:128411344-128411588(+)$1	1	99	104	14.9999
)))..	chr5:70954305-70954612(+)$1	1	247	252	14.9999
)))((	chr2:64120004-64120237(-)$1	1	152	157	14.9999
.))))	chr14:24910313-24910580(+)$1	1	78	83	14.9999
(((((	chr9:117074324-117074555(+)$1	1	50	55	14.9999
(.(((	chr2:177202329-177202620(+)$1	1	28	33	14.9999
...))	chr11:130013475-130013707(+)$1	1	211	216	14.9999
((.((	chr16:11844479-11844746(-)$1	1	31	36	14.9999
))).)	chrX:17772842-17773111(+)$1	1	225	230	14.9999
.....	chr7:45932705-45932963(+)$1	1	157	162	14.9999
...((	chr1:234742587-234742823(-)$1	1	66	71	14.9999
)))))	chr14:75548810-75549104(-)$1	1	76	81	14.9999
(((..	chr5:130977487-130977789(-)$1	1	29	34	14.9999
.....	chr19:7116041-7116290(-)$1	1	242	247	14.9999
.....	chr12:7032380-7032632(+)$1	1	88	93	14.9999
(((((	chr1:11903014-11903267(+)$1	1	73	78	14.9999
(.(((	chr7:47314674-47314927(-)$1	1	40	45	14.9999
.....	chr12:48366791-48367075(-)$1	1	275	280	14.9999
.....	chr19:55692666-55692952(-)$1	1	198	203	14.9999
)))))	chr19:2273160-2273399(+)$1	1	158	163	14.9999
)))))	chr21:34949422-34949690(+)$1	1	124	129	14.9999
)))))	chr11:34493278-34493562(+)$1	1	104	109	14.9999
)))))	chr22:44347131-44347425(+)$1	1	107	112	14.9999
)))))	chr3:41255505-41255799(+)$1	1	272	277	14.9999
(((((	chr3:53899378-53899665(+)$1	1	75	80	14.9999
(((((	chr1:110566199-110566444(+)$1	1	75	80	14.9999
.....	chr15:73852665-73852910(-)$1	1	97	102	14.9999
.((((	chr17:2284131-2284392(+)$1	1	156	161	14.9999
)))).	chr2:231743797-231744043(+)$1	1	103	108	14.9999
))...	chr12:103232361-103232575(-)$1	1	58	63	14.9999
.....	chr1:1287995-1288311(-)$1	1	234	239	14.9999
(((((	chr14:81939181-81939495(-)$1	1	90	95	14.9999
((((.	chr14:23780771-23781034(+)$1	1	80	85	14.9999
.....	chr16:18816315-18816558(-)$1	1	6	11	14.9999

#PSSM
A : 0.85	a : 0.14	
U : 0.85	u : 0.14	
U : 0.85	u : 0.14	
U : 0.85	u : 0.14	
U : 0.85	u : 0.14	

#score	944.9999999999995
#seq	63
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_UTR_m2_run1.nuc.txt

#NT
cccUACUGGGCGGGCUUCUGUCUGCGCGCCCGCGCCCCCGACAGGCGGCUUAUUUGCAUGGAGAGCGGCGGCGGCCAAUGGGCGCGCGCGGCCGGGCAUGCUGGGAUCGGGCUGGGCCGGCUGGGCCGUGGCGGCAGGCGGAGAGCGGCUGGACCGGCUCUGGGUGGCCGAGGCGGCAGCUGCGCGGCGGCACCGGGGCGGCUGCGGCGCGCUCGGAGCCCCGAGGGCACGCGGCCCGGGCAGCUCGGUGUGCGCCCCCGCGAGAGCCGGGGCCCCAGGCCCGCCGGA	chr16:75285363-75285689(-)$1	326	17	305	456.5000

#otherMatches

#Struct PSSM
{CCCKKBB{BB::hhhhhhhh"""ffffff!!a[iiiiiiiii[a[dddd!!dddd[a!!ddddqqqqqqqqdddd22a]dddddddd]a]iiiiiiiii]affffff22hhhhhhhh:::cccnnnnnccc::BB}BBYYCCC}DDDD}A}EEEEEYYBBZZZBB}BB:ddddeeeeellleeeee]ddddhhhhhhhh"""bb[ddddnnnnnddddbb4444hhhhhhhh:::dddd!!ddddbbbb!!ddddoooooodddd22bb]bb]dddd22dddd:BB}	chr20:35491832-35492158(-)$1	326	32	320	456.5000
FFF::::eeeee[bbqqqqqqqqbb]eeeeedddd[dddd"""ccc[ccc"""ddddpppppppdddd]ccc]ccc22dddd]dddd:ggggggg[a!!ccc[allla]ccc22a]gggggggCCCKKA{DDDDKKDDDD{A{A{BBDDDDKKCCCgggggggbb[dddd!!ddddllldddd]dddd]bb]gggggggggggggg!!bb[eeeeemmmmeeeee]bb]gggggggCCC}DDDD}BB}A}A}DDDD}DDDD}AYYCCCFFFFFFBBZZZFFFFFF:::	chr16:75285363-75285689(-)$1	326	17	305	456.5000

#DB
.(((..((.((..((((((((...((((((..(.(((((((((.(.((((..((((.(..((((........))))..).)))))))).).))))))))).)))))))..))))))))...(((.....)))..)).))..))).)))).).)))))..))...)).)).(((((((((...))))).))))((((((((...((.((((.....))))))....))))))))...((((..((((((((..((((......))))..)).)).))))..)))).)).	chr20:35491832-35492158(-)$1	1	32	320	456.5000
(((....(((((.((........)).)))))((((.((((...(((.(((...((((.......)))).))).)))..)))).)))).(((((((.(..(((.(...).)))..).)))))))(((..(.((((..((((.(.(.((((((..((((((((((((.((((..((((...)))).)))).)).)))))))(((((((..((.(((((....))))).)).)))))))))).)))).)).).).)))).)))).)..)))))))))))...))))))...	chr16:75285363-75285689(-)$1	1	17	305	456.5000

#PSSM
g : 0.50	c : 0.50	
c : 1.00	
g : 0.50	c : 0.50	
c : 0.50	U : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
u : 0.50	U : 0.50	
g : 0.50	U : 0.50	
c : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
c : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	C : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	U : 0.50	
a : 0.50	A : 0.50	
c : 0.50	U : 0.50	
u : 0.50	U : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
u : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	A : 0.50	
g : 0.50	A : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
u : 0.50	G : 0.50	
c : 0.50	A : 0.50	
c : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	

#score	913.0
#seq	2
#width	288
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_CDS_m1_run1.nuc.txt

#NT
UCCCCACCCCC	chr1:33236832-33237073(+)$1	241	141	152	24.7796
uccccacacca	chr12:53858528-53858736(+)$1	208	50	61	16.4745
cccccaucccc	chr20:401366-401640(+)$1	274	1	12	21.5593
CUCCCACUCCC	chr12:53849597-53849814(+)$1	217	197	208	16.8983
CCCUCACCCCC	chr1:27736279-27736494(-)$1	215	17	28	20.5423
cccccaccccc	chr5:175956982-175957200(-)$1	218	65	76	25.2033
cccccaccccc	chr14:99976925-99977207(+)$1	282	5	16	25.2033
cccccaccccc	chr16:30675665-30675938(+)$1	273	105	116	25.2033
ccuccuccccc	chr14:63861857-63862167(-)$1	310	69	80	17.9152
uccccuccccc	chr2:61697690-61697970(-)$1	280	70	81	21.9830
CCCCCGCCCCC	chr5:31526437-31526728(-)$1	291	148	159	22.3220
CCCCCACCCCU	chr1:8420515-8420782(-)$1	267	168	179	21.2203
uccccaccccc	chr10:121355842-121356127(-)$1	285	83	94	24.7796
cucccuccccc	chr19:57742903-57743238(+)$1	335	36	47	18.5084
UCCCCACCCCC	chr17:27212844-27213132(-)$1	288	142	153	24.7796
UCCCCUCCCAC	chr16:30675934-30676145(+)$1	211	88	99	17.6610
uccucaccccc	chr17:7750926-7751192(+)$1	266	75	86	20.1186
ACCCCAGCCCC	chr12:49434104-49434355(-)$1	251	215	226	19.6949
CUCCCACCCCU	chr15:56535239-56535517(-)$1	278	15	26	17.3220
uccccucccgc	chrX:53308719-53308996(-)$1	277	48	59	17.6610
CGCCCGCCCCC	chr19:8468334-8468593(+)$1	259	144	155	18.0000
ACCCCAGCCCC	chr12:49433941-49434195(-)$1	254	55	66	19.6949
cccccaccccc	chr14:99976838-99977105(+)$1	267	56	67	25.2033
uccccuccccc	chr19:35759900-35760167(+)$1	267	58	69	21.9830
UCCCCUCCCAC	chr16:30675945-30676180(+)$1	235	77	88	17.6610
CCCCCGCCCCC	chr5:31526543-31526770(-)$1	227	190	201	22.3220
cccccggcccc	chr16:188050-188294(-)$1	244	3	14	18.8474
uccccaccccu	chr2:48132736-48133034(-)$1	298	89	100	20.7966
uccccaccccc	chr17:29422120-29422418(+)$1	298	58	69	24.7796
cccccagcccc	chr19:14203530-14203758(-)$1	228	88	99	21.7288
UCUCCAACCCC	chr2:172016736-172017018(-)$1	282	143	154	16.4745
CCCCCACCCCG	chr19:39014364-39014659(+)$1	295	34	45	21.2203
GCCCCAUCCCC	chr19:51323541-51323850(-)$1	309	93	104	19.1864
UCCCCGCCCCC	chr3:47454302-47454586(+)$1	284	91	102	21.8983
cccccacccuc	chrX:129147755-129148080(+)$1	325	98	109	20.8813
CCCCCACCACC	chr12:7045551-7045779(+)$1	228	202	213	20.3728
accccaccccc	chr7:29923579-29923855(+)$1	276	62	73	23.1694
CCCCCACCCCG	chr12:32260082-32260393(+)$1	311	141	152	21.2203
UCCCCACCCCC	chr1:1250890-1251176(-)$1	286	79	90	24.7796
cucccaccccc	chrX:53263350-53263626(-)$1	276	3	14	21.3050
cccccaccccg	chr17:28256911-28257216(-)$1	305	97	108	21.2203
uccccaccccc	chr19:36211904-36212166(+)$1	262	238	249	24.7796
uccccuccccc	chr16:15031894-15032176(+)$1	282	48	59	21.9830
uccccacacca	chr12:53858471-53858690(+)$1	219	107	118	16.4745
uccccACCCGC	chr16:30389899-30390184(-)$1	285	16	27	20.4576
ucuccuccccc	chr16:30748693-30748932(+)$1	239	117	128	17.4915
cccccacccca	chr17:4793421-4793683(+)$1	262	69	80	21.2203
ACCCCAGCCCC	chr12:49434067-49434304(-)$1	237	164	175	19.6949
CCCCCGCCCCC	chr1:8420254-8420570(-)$1	316	43	54	22.3220
CUCCCACUCCC	chr12:53849677-53849885(+)$1	208	117	128	16.8983
UUCCCACACCC	chr19:51323498-51323741(-)$1	243	121	132	16.5593
cccccaccccc	chr1:16262385-16262744(+)$1	359	74	85	25.2033
cccccagcccc	chr19:14203465-14203730(-)$1	265	60	71	21.7288
accccgccccc	chr5:61602141-61602416(+)$1	275	83	94	20.2881
UCCCCACCCCC	chr1:33236873-33237149(+)$1	276	100	111	24.7796
cccccaccccc	chr7:98507771-98508049(+)$1	278	87	98	25.2033
uccccgucccc	chr17:80708448-80708715(+)$1	267	207	218	18.2542
cccccaucccc	chr2:172016818-172017096(-)$1	278	14	25	21.5593

#otherMatches

#Struct PSSM
:CCCBBLLLEE	chr17:7417245-7417499(+)$1	254	23	34	16.6440
g++++++++++	chr1:33236832-33237073(+)$1	241	141	152	24.7796
ccc:::EEEEE	chr12:53858528-53858736(+)$1	208	50	61	16.4745
:::::::::::	chr20:401366-401640(+)$1	274	1	12	21.5593
::::BB}DDDD	chr12:53849597-53849814(+)$1	217	197	208	16.8983
^^^^^^^^^^^	chr1:27736279-27736494(-)$1	215	17	28	20.5423
:::::::::::	chr5:175956982-175957200(-)$1	218	65	76	25.2033
:::::::::::	chr14:99976925-99977207(+)$1	282	5	16	25.2033
eee[dddd!!b	chr16:30675665-30675938(+)$1	273	105	116	25.2033
:::::::::::	chr14:63861857-63862167(-)$1	310	69	80	17.9152
iiiiiiiiggg	chr2:61697690-61697970(-)$1	280	70	81	21.9830
I::::::::::	chr5:31526437-31526728(-)$1	291	148	159	22.3220
+++++++++++	chr1:8420515-8420782(-)$1	267	168	179	21.2203
LLDDDDKKA{D	chr10:121355842-121356127(-)$1	285	83	94	24.7796
:::::::::::	chr19:57742903-57743238(+)$1	335	36	47	18.5084
::BB}JJJJJJ	chr17:27212844-27213132(-)$1	288	142	153	24.7796
GGGGGGCCC::	chr16:30675934-30676145(+)$1	211	88	99	17.6610
GGGGGGKKCCC	chr17:7750926-7751192(+)$1	266	75	86	20.1186
eeee[dddd""	chr12:49434104-49434355(-)$1	251	215	226	19.6949
JJJJJJJJJBB	chr15:56535239-56535517(-)$1	278	15	26	17.3220
:::::::::::	chrX:53308719-53308996(-)$1	277	48	59	17.6610
rbb]ccc333c	chr19:8468334-8468593(+)$1	259	144	155	18.0000
MMMIIIIIIII	chr12:49433941-49434195(-)$1	254	55	66	19.6949
:::::::::::	chr14:99976838-99977105(+)$1	267	56	67	25.2033
^^^^^^^bb44	chr19:35759900-35760167(+)$1	267	58	69	21.9830
GGGGGGCCC::	chr16:30675945-30676180(+)$1	235	77	88	17.6610
I@@@@@@@@@@	chr5:31526543-31526770(-)$1	227	190	201	22.3220
DLLLFFFFFF{	chr16:188050-188294(-)$1	244	3	14	18.8474
:::::::::::	chr2:48132736-48133034(-)$1	298	89	100	20.7966
::eeeeemmmm	chr17:29422120-29422418(+)$1	298	58	69	24.7796
dd%%%%%%ddd	chr19:14203530-14203758(-)$1	228	88	99	21.7288
}DDDDYYDDDD	chr2:172016736-172017018(-)$1	282	143	154	16.4745
dhhhhhhhh""	chr19:39014364-39014659(+)$1	295	34	45	21.2203
bb:::::::::	chr19:51323541-51323850(-)$1	309	93	104	19.1864
:::::::::::	chr3:47454302-47454586(+)$1	284	91	102	21.8983
^^^^^^^^^^^	chrX:129147755-129148080(+)$1	325	98	109	20.8813
nnnnnccc:::	chr12:7045551-7045779(+)$1	228	202	213	20.3728
:::::::::::	chr7:29923579-29923855(+)$1	276	62	73	23.1694
e&&&&&&&eee	chr12:32260082-32260393(+)$1	311	141	152	21.2203
::::::::::c	chr1:1250890-1251176(-)$1	286	79	90	24.7796
:::::::::::	chrX:53263350-53263626(-)$1	276	3	14	21.3050
::::::::DDD	chr17:28256911-28257216(-)$1	305	97	108	21.2203
:::::::::::	chr19:36211904-36212166(+)$1	262	238	249	24.7796
:::::::::::	chr16:15031894-15032176(+)$1	282	48	59	21.9830
0000000000c	chr12:53858471-53858690(+)$1	219	107	118	16.4745
::::::::BBD	chr16:30389899-30390184(-)$1	285	16	27	20.4576
^^^^^^^^^^^	chr16:30748693-30748932(+)$1	239	117	128	17.4915
^^^^^^^^^^^	chr17:4793421-4793683(+)$1	262	69	80	21.2203
:JJJJJJJJJJ	chr12:49434067-49434304(-)$1	237	164	175	19.6949
bmmmmbb333c	chr1:8420254-8420570(-)$1	316	43	54	22.3220
:::::::BB}D	chr12:53849677-53849885(+)$1	208	117	128	16.8983
cccccc%%%%%	chr19:51323498-51323741(-)$1	243	121	132	16.5593
^^^^^^^^^^^	chr1:16262385-16262744(+)$1	359	74	85	25.2033
oooooobb:::	chr19:14203465-14203730(-)$1	265	60	71	21.7288
:::::::::::	chr5:61602141-61602416(+)$1	275	83	94	20.2881
g++++++++++	chr1:33236873-33237149(+)$1	276	100	111	24.7796
WWWWDDDDKKC	chr7:98507771-98508049(+)$1	278	87	98	25.2033
EAGGGGGGG@@	chr17:80708448-80708715(+)$1	267	207	218	18.2542
::::bbooooo	chr2:172016818-172017096(-)$1	278	14	25	21.5593

#DB
.(((((...((	chr17:7417245-7417499(+)$1	1	23	34	16.6440
(..........	chr1:33236832-33237073(+)$1	1	141	152	24.7796
)))...(((((	chr12:53858528-53858736(+)$1	1	50	61	16.4745
...........	chr20:401366-401640(+)$1	1	1	12	21.5593
....)).))))	chr12:53849597-53849814(+)$1	1	197	208	16.8983
...........	chr1:27736279-27736494(-)$1	1	17	28	20.5423
...........	chr5:175956982-175957200(-)$1	1	65	76	25.2033
...........	chr14:99976925-99977207(+)$1	1	5	16	25.2033
(((.((((..(	chr16:30675665-30675938(+)$1	1	105	116	25.2033
...........	chr14:63861857-63862167(-)$1	1	69	80	17.9152
(((((((((((	chr2:61697690-61697970(-)$1	1	70	81	21.9830
)..........	chr5:31526437-31526728(-)$1	1	148	159	22.3220
...........	chr1:8420515-8420782(-)$1	1	168	179	21.2203
..((((..(.(	chr10:121355842-121356127(-)$1	1	83	94	24.7796
...........	chr19:57742903-57743238(+)$1	1	36	47	18.5084
..)).))))))	chr17:27212844-27213132(-)$1	1	142	153	24.7796
(((((((((..	chr16:30675934-30676145(+)$1	1	88	99	17.6610
((((((..(((	chr17:7750926-7751192(+)$1	1	75	86	20.1186
((((.((((..	chr12:49434104-49434355(-)$1	1	215	226	19.6949
(((((((((((	chr15:56535239-56535517(-)$1	1	15	26	17.3220
...........	chrX:53308719-53308996(-)$1	1	48	59	17.6610
.)).)))...)	chr19:8468334-8468593(+)$1	1	144	155	18.0000
...((((((((	chr12:49433941-49434195(-)$1	1	55	66	19.6949
...........	chr14:99976838-99977105(+)$1	1	56	67	25.2033
.......))..	chr19:35759900-35760167(+)$1	1	58	69	21.9830
(((((((((..	chr16:30675945-30676180(+)$1	1	77	88	17.6610
)..........	chr5:31526543-31526770(-)$1	1	190	201	22.3220
(...((((((.	chr16:188050-188294(-)$1	1	3	14	18.8474
...........	chr2:48132736-48133034(-)$1	1	89	100	20.7966
..(((((....	chr17:29422120-29422418(+)$1	1	58	69	24.7796
((......(((	chr19:14203530-14203758(-)$1	1	88	99	21.7288
.))))..))))	chr2:172016736-172017018(-)$1	1	143	154	16.4745
)((((((((..	chr19:39014364-39014659(+)$1	1	34	45	21.2203
)).........	chr19:51323541-51323850(-)$1	1	93	104	19.1864
...........	chr3:47454302-47454586(+)$1	1	91	102	21.8983
...........	chrX:129147755-129148080(+)$1	1	98	109	20.8813
.....)))...	chr12:7045551-7045779(+)$1	1	202	213	20.3728
...........	chr7:29923579-29923855(+)$1	1	62	73	23.1694
(.......(((	chr12:32260082-32260393(+)$1	1	141	152	21.2203
..........(	chr1:1250890-1251176(-)$1	1	79	90	24.7796
...........	chrX:53263350-53263626(-)$1	1	3	14	21.3050
........(((	chr17:28256911-28257216(-)$1	1	97	108	21.2203
...........	chr19:36211904-36212166(+)$1	1	238	249	24.7796
...........	chr16:15031894-15032176(+)$1	1	48	59	21.9830
..........)	chr12:53858471-53858690(+)$1	1	107	118	16.4745
........(((	chr16:30389899-30390184(-)$1	1	16	27	20.4576
...........	chr16:30748693-30748932(+)$1	1	117	128	17.4915
...........	chr17:4793421-4793683(+)$1	1	69	80	21.2203
.((((((((((	chr12:49434067-49434304(-)$1	1	164	175	19.6949
(....))...)	chr1:8420254-8420570(-)$1	1	43	54	22.3220
.......)).)	chr12:53849677-53849885(+)$1	1	117	128	16.8983
((((((.....	chr19:51323498-51323741(-)$1	1	121	132	16.5593
...........	chr1:16262385-16262744(+)$1	1	74	85	25.2033
......))...	chr19:14203465-14203730(-)$1	1	60	71	21.7288
...........	chr5:61602141-61602416(+)$1	1	83	94	20.2881
(..........	chr1:33236873-33237149(+)$1	1	100	111	24.7796
....((((..(	chr7:98507771-98508049(+)$1	1	87	98	25.2033
)))))))))..	chr17:80708448-80708715(+)$1	1	207	218	18.2542
....((.....	chr2:172016818-172017096(-)$1	1	14	25	21.5593

#PSSM
c : 0.28	u : 0.25	C : 0.20	U : 0.15	A : 0.05	a : 0.03	G : 0.01	
c : 0.54	C : 0.33	U : 0.06	u : 0.03	G : 0.01	
c : 0.54	C : 0.40	u : 0.03	U : 0.01	
c : 0.55	C : 0.40	U : 0.01	u : 0.01	
c : 0.57	C : 0.42	
a : 0.38	A : 0.32	u : 0.11	G : 0.08	g : 0.05	U : 0.03	
c : 0.44	C : 0.35	u : 0.05	G : 0.05	g : 0.05	a : 0.01	A : 0.01	U : 0.01	
c : 0.52	C : 0.38	a : 0.03	U : 0.03	A : 0.01	
c : 0.55	C : 0.42	A : 0.01	
c : 0.50	C : 0.38	u : 0.03	A : 0.03	g : 0.01	G : 0.01	
c : 0.47	C : 0.37	a : 0.05	U : 0.03	G : 0.03	u : 0.01	g : 0.01	

#score	1234.1186440677968
#seq	59
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_UTR_m2_run1.nuc.txt

#NT
GGGGGAGGG	chr17:7476459-7476731(+)$1	272	99	108	20.3333
UGGGGCGGG	chr7:6522908-6523164(-)$1	256	45	54	13.7857
GGAGCAGGG	chr17:75452336-75452622(+)$1	286	4	13	13.3095
GUGGGAGGG	chr15:72521959-72522269(-)$1	310	267	276	17.0000
GGGGGCGGG	chr8:144678733-144678978(-)$1	245	18	27	18.1904
GGGGGAGGG	chr19:41770851-41771105(+)$1	254	55	64	20.3333
ggggcaggg	chr10:977208-977498(-)$1	290	270	279	17.2380
GGGUGAGGG	chr4:763421-763712(-)$1	291	276	285	16.7619
GGAGGAGGG	chr11:2158434-2158686(-)$1	252	40	49	16.4047
GGGGGCGGG	chr6:64282264-64282542(+)$1	278	2	11	18.1904
GGGACAGGG	chr7:2685063-2685309(+)$1	246	65	74	13.5476
gcgggcggg	chr9:127020529-127020798(+)$1	269	18	27	14.9761
GGGUCAGGG	chr17:80192638-80192897(+)$1	259	29	38	13.6666
GCGGGCGGG	chr1:21112686-21112933(-)$1	247	57	66	14.9761
GGCAGAGGG	chr5:154135939-154136180(+)$1	241	92	101	12.4761
gggugcggg	chr5:154136597-154136846(+)$1	249	43	52	14.6190
GAGGCAGGG	chr7:1577337-1577610(+)$1	273	53	62	14.0238
GUGGGAGGG	chr15:72521828-72522093(-)$1	265	91	100	17.0000
GAGGGAGGG	chr12:76477571-76477864(-)$1	293	14	23	17.1190
GGGCGAGGG	chr20:32251549-32251799(-)$1	250	136	145	16.4047
CGGGGAGGG	chr17:80192427-80192681(+)$1	254	100	109	16.1666
GGUGGAGGG	chr19:575271-575533(+)$1	262	198	207	16.2857
GGGGCCGGG	chr2:241499731-241499989(-)$1	258	82	91	15.0952
GGGGGAUGG	chr4:76597587-76597856(-)$1	269	233	242	16.0476
GGGGAAGGG	chr15:72520883-72521148(-)$1	265	122	131	16.6428
CGGGGCGGG	chr12:31478509-31478789(-)$1	280	83	92	14.0238
GGGGGCGGG	chr8:101963094-101963363(-)$1	269	219	228	18.1904
GGGGGCAGG	chr2:242751910-242752222(+)$1	312	25	34	13.9047
GGGGGCUGG	chr17:80192924-80193172(+)$1	248	82	91	13.9047
CGGGCAGGG	chr20:62566493-62566717(+)$1	224	171	180	13.0714
GGAGGUGGG	chr20:36155856-36156134(-)$1	278	155	164	13.1904
GAGGGAGGG	chr11:66394082-66394403(+)$1	321	84	93	17.1190
gggggaggg	chr2:242254345-242254644(-)$1	299	71	80	20.3333
GGGGGAggg	chr10:102759197-102759456(+)$1	259	26	35	20.3333
GCGGGAGGG	chr2:223726320-223726589(+)$1	269	100	109	17.1190
GCUGGAGGG	chr5:74162099-74162359(-)$1	260	24	33	13.0714
GGGGGAAGG	chr14:54421085-54421340(-)$1	255	82	91	16.0476
GGGAGUGGG	chr4:763946-764199(-)$1	253	92	101	13.4285
GGGGAAGUG	chr17:75318617-75318871(+)$1	254	49	58	11.8809
GUGGGAGGG	chr15:67391105-67391425(+)$1	320	88	97	17.0000
GAGGGAGGG	chr17:75316246-75316507(+)$1	261	76	85	17.1190

#otherMatches

#Struct PSSM
ba[eeeeem	chr4:763252-763510(-)$1	258	74	83	16.7619
grrrrrrrr	chr17:7476459-7476731(+)$1	272	99	108	20.3333
ee]ccc]cc	chr7:6522908-6523164(-)$1	256	45	54	13.7857
EEEEE:hhh	chr17:75452336-75452622(+)$1	286	4	13	13.3095
[arrrrrrr	chr15:72521959-72522269(-)$1	310	267	276	17.0000
JJ::ddddn	chr8:144678733-144678978(-)$1	245	18	27	18.1904
ggga22ccc	chr19:41770851-41771105(+)$1	254	55	64	20.3333
EEEEE}BB}	chr10:977208-977498(-)$1	290	270	279	17.2380
DDBBDDDDB	chr4:763421-763712(-)$1	291	276	285	16.7619
JJJJJJJJJ	chr11:2158434-2158686(-)$1	252	40	49	16.4047
hhhhhhhhm	chr6:64282264-64282542(+)$1	278	2	11	18.1904
eee[bb[bb	chr7:2685063-2685309(+)$1	246	65	74	13.5476
:::HHHHHH	chr9:127020529-127020798(+)$1	269	18	27	14.9761
!!bb[bb[a	chr17:80192638-80192897(+)$1	259	29	38	13.6666
::=======	chr1:21112686-21112933(-)$1	247	57	66	14.9761
EEEEE::ff	chr5:154135939-154136180(+)$1	241	92	101	12.4761
GGG::ffff	chr5:154136597-154136846(+)$1	249	43	52	14.6190
cc[a!!ddd	chr7:1577337-1577610(+)$1	273	53	62	14.0238
ffffff"""	chr15:72521828-72522093(-)$1	265	91	100	17.0000
ccHHHHHHH	chr12:76477571-76477864(-)$1	293	14	23	17.1190
qqqqqqqqe	chr20:32251549-32251799(-)$1	250	136	145	16.4047
ccccnnnnn	chr17:80192427-80192681(+)$1	254	100	109	16.1666
CCC}BBDDD	chr19:575271-575533(+)$1	262	198	207	16.2857
a[bbggggg	chr2:241499731-241499989(-)$1	258	82	91	15.0952
gggggggEE	chr4:76597587-76597856(-)$1	269	233	242	16.0476
ccc]ccc55	chr15:72520883-72521148(-)$1	265	122	131	16.6428
ca[hhhhhh	chr12:31478509-31478789(-)$1	280	83	92	14.0238
::hhhhhhh	chr8:101963094-101963363(-)$1	269	219	228	18.1904
eeppppppp	chr2:242751910-242752222(+)$1	312	25	34	13.9047
iiiiiiiii	chr17:80192924-80193172(+)$1	248	82	91	13.9047
22a]eeeee	chr20:62566493-62566717(+)$1	224	171	180	13.0714
ff]a]ffff	chr20:36155856-36156134(-)$1	278	155	164	13.1904
FFFF{DDDD	chr11:66394082-66394403(+)$1	321	84	93	17.1190
qqqqqqqqd	chr2:242254345-242254644(-)$1	299	71	80	20.3333
hhh"""bb[	chr10:102759197-102759456(+)$1	259	26	35	20.3333
gg22ccc::	chr2:223726320-223726589(+)$1	269	100	109	17.1190
CCC:::ddd	chr5:74162099-74162359(-)$1	260	24	33	13.0714
E{IIIIIII	chr14:54421085-54421340(-)$1	255	82	91	16.0476
EEEE{DDDD	chr4:763946-764199(-)$1	253	92	101	13.4285
$ffffff[a	chr17:75318617-75318871(+)$1	254	49	58	11.8809
ddCCCKKDD	chr15:67391105-67391425(+)$1	320	88	97	17.0000
A{GGGGGGG	chr17:75316246-75316507(+)$1	261	76	85	17.1190

#DB
)(.(((((.	chr4:763252-763510(-)$1	1	74	83	16.7619
(........	chr17:7476459-7476731(+)$1	1	99	108	20.3333
)).))).))	chr7:6522908-6523164(-)$1	1	45	54	13.7857
(((((.(((	chr17:75452336-75452622(+)$1	1	4	13	13.3095
.(.......	chr15:72521959-72522269(-)$1	1	267	276	17.0000
((..((((.	chr8:144678733-144678978(-)$1	1	18	27	18.1904
))))..)))	chr19:41770851-41771105(+)$1	1	55	64	20.3333
))))).)).	chr10:977208-977498(-)$1	1	270	279	17.2380
)))))))))	chr4:763421-763712(-)$1	1	276	285	16.7619
(((((((((	chr11:2158434-2158686(-)$1	1	40	49	16.4047
((((((((.	chr6:64282264-64282542(+)$1	1	2	11	18.1904
(((.((.((	chr7:2685063-2685309(+)$1	1	65	74	13.5476
...((((((	chr9:127020529-127020798(+)$1	1	18	27	14.9761
..((.((.(	chr17:80192638-80192897(+)$1	1	29	38	13.6666
..(((((((	chr1:21112686-21112933(-)$1	1	57	66	14.9761
)))))..((	chr5:154135939-154136180(+)$1	1	92	101	12.4761
(((..((((	chr5:154136597-154136846(+)$1	1	43	52	14.6190
((.(..(((	chr7:1577337-1577610(+)$1	1	53	62	14.0238
((((((...	chr15:72521828-72522093(-)$1	1	91	100	17.0000
))(((((((	chr12:76477571-76477864(-)$1	1	14	23	17.1190
........)	chr20:32251549-32251799(-)$1	1	136	145	16.4047
)(((.....	chr17:80192427-80192681(+)$1	1	100	109	16.1666
))).)))))	chr19:575271-575533(+)$1	1	198	207	16.2857
(.(((((((	chr2:241499731-241499989(-)$1	1	82	91	15.0952
)))))))))	chr4:76597587-76597856(-)$1	1	233	242	16.0476
))).)))..	chr15:72520883-72521148(-)$1	1	122	131	16.6428
)(.((((((	chr12:31478509-31478789(-)$1	1	83	92	14.0238
..(((((((	chr8:101963094-101963363(-)$1	1	219	228	18.1904
((.......	chr2:242751910-242752222(+)$1	1	25	34	13.9047
(((((((((	chr17:80192924-80193172(+)$1	1	82	91	13.9047
..).)))))	chr20:62566493-62566717(+)$1	1	171	180	13.0714
)).).))))	chr20:36155856-36156134(-)$1	1	155	164	13.1904
((((.((((	chr11:66394082-66394403(+)$1	1	84	93	17.1190
........)	chr2:242254345-242254644(-)$1	1	71	80	20.3333
(((...((.	chr10:102759197-102759456(+)$1	1	26	35	20.3333
))..)))..	chr2:223726320-223726589(+)$1	1	100	109	17.1190
(((...(((	chr5:74162099-74162359(-)$1	1	24	33	13.0714
(.(((((((	chr14:54421085-54421340(-)$1	1	82	91	16.0476
((((.((((	chr4:763946-764199(-)$1	1	92	101	13.4285
.((((((.(	chr17:75318617-75318871(+)$1	1	49	58	11.8809
))(((..((	chr15:67391105-67391425(+)$1	1	88	97	17.0000
(.(((((((	chr17:75316246-75316507(+)$1	1	76	85	17.1190

#PSSM
G : 0.80	g : 0.09	C : 0.07	U : 0.02	
G : 0.66	A : 0.09	U : 0.07	g : 0.07	C : 0.07	c : 0.02	
G : 0.76	g : 0.09	A : 0.07	U : 0.04	C : 0.02	
G : 0.73	U : 0.07	g : 0.07	A : 0.07	u : 0.02	C : 0.02	
G : 0.71	C : 0.14	g : 0.07	A : 0.04	c : 0.02	
A : 0.64	C : 0.21	a : 0.04	c : 0.04	U : 0.04	
G : 0.78	g : 0.11	U : 0.04	A : 0.04	
G : 0.85	g : 0.11	U : 0.02	
G : 0.88	g : 0.11	

#score	667.0952380952386
#seq	42
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_CDS_m2_run2.nuc.txt

#NT
GGCGGCGGCG	chr7:2883609-2883945(-)$1	336	20	30	26.1363
ugcggcggcg	chr16:89894962-89895338(+)$1	376	14	24	21.4772
GGCGGCGGCG	chr2:220042985-220043337(+)$1	352	289	299	26.1363
ggcggcggcg	chr12:19592828-19593136(+)$1	308	9	19	26.1363
ggcggcggcg	chr18:60382867-60383187(+)$1	320	171	181	26.1363
ggcggcggcg	chr19:39340412-39340681(-)$1	269	179	189	26.1363
GGCGGCGGCG	chr16:22385523-22385861(-)$1	338	108	118	26.1363
GGCGGCGGCG	chr19:1020848-1021214(-)$1	366	107	117	26.1363
ggcggcggcc	chr19:18391696-18391956(-)$1	260	213	223	21.7045
ggaggcgggg	chr6:43738518-43738783(+)$1	265	39	49	17.3863
ggcggcggcg	chr20:306874-307148(+)$1	274	167	177	26.1363
ggcggcggag	chr10:105614882-105615357(-)$1	475	43	53	21.7045
ggcggcggcg	chr17:79603841-79604146(-)$1	305	74	84	26.1363
GGCGGCGGCG	chr20:278121-278416(+)$1	295	115	125	26.1363
ggcGGCGCCG	chr12:133067023-133067339(+)$1	316	44	54	21.7045
GGCGGCGGCG	chr19:531688-532046(+)$1	358	59	69	26.1363
GGCGGCGGGG	chr9:6645323-6645591(-)$1	268	209	219	21.9318
ggcagcggcg	chr19:14201101-14201392(-)$1	291	71	81	22.8409
ggcagcggcg	chr6:114181337-114181595(+)$1	258	60	70	22.8409
GGCAGCAGCG	chr11:65383573-65383906(+)$1	333	191	201	18.6363
GGCAGCCGCG	chr22:36681859-36682099(-)$1	240	105	115	18.7499
GGUGGCGGCG	chr2:242755743-242756064(+)$1	321	216	226	21.7045
ggccgaggcg	chr14:73576011-73576301(+)$1	290	252	262	17.8409
GGCUGCGGGG	chr12:131356993-131357253(+)$1	260	88	98	18.2954
ggcggcggcg	chr17:48784871-48785244(-)$1	373	157	167	26.1363
ggcggccgcg	chr22:29279647-29279951(+)$1	304	241	251	22.0454
GGCGGCCGCG	chr7:2394462-2394864(+)$1	402	55	65	22.0454
gccugcggcg	chr17:16945976-16946284(+)$1	308	67	77	17.7272
ggcggcggcg	chr19:49458057-49458391(+)$1	334	106	116	26.1363
ggcggcggcg	chr6:7910856-7911123(-)$1	267	198	208	26.1363
GGCGGCGGCA	chr16:88789562-88789825(-)$1	263	132	142	21.5909
GGCCCCGGCG	chr10:120802086-120802385(-)$1	299	160	170	18.0681
GGCGGCGGCG	chr16:46918504-46918752(+)$1	248	131	141	26.1363
GGCGCCGGCG	chr16:87902809-87903179(-)$1	370	186	196	21.5909
ggcggcggcg	chr10:98346487-98346776(-)$1	289	110	120	26.1363
GGUGGCGGCG	chr20:42086679-42086903(+)$1	224	142	152	21.7045
ggcggcggcg	chr19:2015294-2015607(-)$1	313	156	166	26.1363
ggcggcgucg	chr6:114180844-114181108(+)$1	264	145	155	21.5909
GGCGGCGGCC	chr11:62494184-62494480(-)$1	296	53	63	21.7045
ggcggcggcg	chr2:231902347-231902591(+)$1	244	211	221	26.1363
agcggcggcg	chr20:60718832-60719109(+)$1	277	127	137	21.4772
ggcggcggcg	chr6:170123811-170124179(-)$1	368	61	71	26.1363
GGCAGCAGCG	chr8:98787972-98788273(+)$1	301	179	189	18.6363

#otherMatches

#Struct PSSM
[abb[ccc[c	chr8:126010697-126010976(+)$1	279	106	116	18.1818
IIIIIIIIIf	chr7:2883609-2883945(-)$1	336	20	30	26.1363
GGGGGGMMMM	chr16:89894962-89895338(+)$1	376	14	24	21.4772
eee]dddd:i	chr2:220042985-220043337(+)$1	352	289	299	26.1363
GGGGGGG{CC	chr12:19592828-19593136(+)$1	308	9	19	26.1363
=======[a[	chr18:60382867-60383187(+)$1	320	171	181	26.1363
:HHHHHHHHY	chr19:39340412-39340681(-)$1	269	179	189	26.1363
]bb]bb22bb	chr16:22385523-22385861(-)$1	338	108	118	26.1363
ddd]eeeeed	chr19:1020848-1021214(-)$1	366	107	117	26.1363
==========	chr19:18391696-18391956(-)$1	260	213	223	21.7045
dmmmmddddd	chr6:43738518-43738783(+)$1	265	39	49	17.3863
JJJ}BBGGGG	chr20:306874-307148(+)$1	274	167	177	26.1363
dbbggggggg	chr10:105614882-105615357(-)$1	475	43	53	21.7045
hhhhhh[bb#	chr17:79603841-79604146(-)$1	305	74	84	26.1363
b]a]eeeee]	chr20:278121-278416(+)$1	295	115	125	26.1363
bb]aiiiiii	chr12:133067023-133067339(+)$1	316	44	54	21.7045
dddffffffo	chr19:531688-532046(+)$1	358	59	69	26.1363
[ffffffppp	chr9:6645323-6645591(-)$1	268	209	219	21.9318
ebb]gggggg	chr19:14201101-14201392(-)$1	291	71	81	22.8409
FFF{GGGGGG	chr6:114181337-114181595(+)$1	258	60	70	22.8409
DDD:ffffff	chr11:65383573-65383906(+)$1	333	191	201	18.6363
[aeeeee!!b	chr22:36681859-36682099(-)$1	240	105	115	18.7499
FGGGGGGG}D	chr2:242755743-242756064(+)$1	321	216	226	21.7045
55555eeeee	chr14:73576011-73576301(+)$1	290	252	262	17.8409
cccffffff[	chr12:131356993-131357253(+)$1	260	88	98	18.2954
mbb]eeeee]	chr17:48784871-48785244(-)$1	373	157	167	26.1363
ee]iiiiiii	chr22:29279647-29279951(+)$1	304	241	251	22.0454
GGGGGGeeee	chr7:2394462-2394864(+)$1	402	55	65	22.0454
hhhhCCCGGG	chr17:16945976-16946284(+)$1	308	67	77	17.7272
"bb[bb[bbm	chr19:49458057-49458391(+)$1	334	106	116	26.1363
:bbmmmmbbf	chr6:7910856-7911123(-)$1	267	198	208	26.1363
ccc]acccdd	chr16:88789562-88789825(-)$1	263	132	142	21.5909
dddd"""===	chr10:120802086-120802385(-)$1	299	160	170	18.0681
FFFFHHHHHH	chr16:46918504-46918752(+)$1	248	131	141	26.1363
:HHHHHHHHD	chr16:87902809-87903179(-)$1	370	186	196	21.5909
JJJJJJJJJJ	chr10:98346487-98346776(-)$1	289	110	120	26.1363
==a]bb::::	chr20:42086679-42086903(+)$1	224	142	152	21.7045
iiiiiiiiib	chr19:2015294-2015607(-)$1	313	156	166	26.1363
FFFFFF{EEE	chr6:114180844-114181108(+)$1	264	145	155	21.5909
hhh22fffff	chr11:62494184-62494480(-)$1	296	53	63	21.7045
3iiiiiiiii	chr2:231902347-231902591(+)$1	244	211	221	26.1363
]dddd22ccc	chr20:60718832-60719109(+)$1	277	127	137	21.4772
[bb!!a!!bb	chr6:170123811-170124179(-)$1	368	61	71	26.1363
f####ccc[h	chr8:98787972-98788273(+)$1	301	179	189	18.6363

#DB
.(((.(((.(	chr8:126010697-126010976(+)$1	1	106	116	18.1818
((((((((((	chr7:2883609-2883945(-)$1	1	20	30	26.1363
((((((....	chr16:89894962-89895338(+)$1	1	14	24	21.4772
))).)))).(	chr2:220042985-220043337(+)$1	1	289	299	26.1363
(((((((.((	chr12:19592828-19593136(+)$1	1	9	19	26.1363
(((((((.(.	chr18:60382867-60383187(+)$1	1	171	181	26.1363
.)))))))).	chr19:39340412-39340681(-)$1	1	179	189	26.1363
.)).))..))	chr16:22385523-22385861(-)$1	1	108	118	26.1363
))).)))))(	chr19:1020848-1021214(-)$1	1	107	117	26.1363
))))))))))	chr19:18391696-18391956(-)$1	1	213	223	21.7045
(....)))))	chr6:43738518-43738783(+)$1	1	39	49	17.3863
))).))))))	chr20:306874-307148(+)$1	1	167	177	26.1363
))))))))))	chr10:105614882-105615357(-)$1	1	43	53	21.7045
((((((.((.	chr17:79603841-79604146(-)$1	1	74	84	26.1363
).).))))).	chr20:278121-278416(+)$1	1	115	125	26.1363
)).)))))))	chr12:133067023-133067339(+)$1	1	44	54	21.7045
)))((((((.	chr19:531688-532046(+)$1	1	59	69	26.1363
.((((((...	chr9:6645323-6645591(-)$1	1	209	219	21.9318
))).))))))	chr19:14201101-14201392(-)$1	1	71	81	22.8409
(((.((((((	chr6:114181337-114181595(+)$1	1	60	70	22.8409
))).((((((	chr11:65383573-65383906(+)$1	1	191	201	18.6363
.((((((..(	chr22:36681859-36682099(-)$1	1	105	115	18.7499
)))))))).)	chr2:242755743-242756064(+)$1	1	216	226	21.7045
.....)))))	chr14:73576011-73576301(+)$1	1	252	262	17.8409
)))((((((.	chr12:131356993-131357253(+)$1	1	88	98	18.2954
.)).))))).	chr17:48784871-48785244(-)$1	1	157	167	26.1363
)).)))))))	chr22:29279647-29279951(+)$1	1	241	251	22.0454
((((((((((	chr7:2394462-2394864(+)$1	1	55	65	22.0454
))))((((((	chr17:16945976-16946284(+)$1	1	67	77	17.7272
.((.((.((.	chr19:49458057-49458391(+)$1	1	106	116	26.1363
.((....))(	chr6:7910856-7911123(-)$1	1	198	208	26.1363
))).))))))	chr16:88789562-88789825(-)$1	1	132	142	21.5909
((((...(((	chr10:120802086-120802385(-)$1	1	160	170	18.0681
))))))))))	chr16:46918504-46918752(+)$1	1	131	141	26.1363
.)))))))))	chr16:87902809-87903179(-)$1	1	186	196	21.5909
((((((((((	chr10:98346487-98346776(-)$1	1	110	120	26.1363
))).))....	chr20:42086679-42086903(+)$1	1	142	152	21.7045
))))))))))	chr19:2015294-2015607(-)$1	1	156	166	26.1363
((((((.(((	chr6:114180844-114181108(+)$1	1	145	155	21.5909
)))..)))))	chr11:62494184-62494480(-)$1	1	53	63	21.7045
.)))))))))	chr2:231902347-231902591(+)$1	1	211	221	26.1363
.))))..)))	chr20:60718832-60719109(+)$1	1	127	137	21.4772
.((..(..((	chr6:170123811-170124179(-)$1	1	61	71	26.1363
(....(((.(	chr8:98787972-98788273(+)$1	1	179	189	18.6363

#PSSM
g : 0.49	G : 0.45	u : 0.02	a : 0.02	
g : 0.52	G : 0.45	c : 0.02	
c : 0.52	C : 0.40	U : 0.04	a : 0.02	
g : 0.43	G : 0.34	A : 0.06	C : 0.04	a : 0.04	c : 0.02	U : 0.02	u : 0.02	
g : 0.52	G : 0.43	C : 0.04	
c : 0.49	C : 0.47	a : 0.02	
g : 0.49	G : 0.38	A : 0.04	C : 0.04	c : 0.02	
g : 0.49	G : 0.43	C : 0.04	u : 0.02	
c : 0.47	C : 0.43	G : 0.04	g : 0.02	a : 0.02	
g : 0.49	G : 0.43	c : 0.02	A : 0.02	C : 0.02	

#score	1009.7727272727269
#seq	44
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_UTR_m1_run2.nuc.txt

#NT
CUUUU	chr4:83276240-83276532(-)$1	292	240	245	15.0000
CUUUU	chr6:99848196-99848497(-)$1	301	86	91	15.0000
CUUUU	chr1:11083311-11083571(+)$1	260	172	177	15.0000
CUUUU	chr2:170429963-170430248(-)$1	285	103	108	15.0000
CUUUU	chr12:98991741-98992015(+)$1	274	26	31	15.0000
CUUUU	chr12:9907008-9907249(-)$1	241	126	131	15.0000
CUUUU	chr15:45008481-45008722(+)$1	241	16	21	15.0000
CUUUU	chr3:50137412-50137683(+)$1	271	239	244	15.0000
CUUUU	chr6:160169357-160169583(+)$1	226	145	150	15.0000
CUUUU	chr3:14519997-14520267(+)$1	270	30	35	15.0000
CUUUU	chr1:19440005-19440262(-)$1	257	41	46	15.0000
CUUUU	chr14:70235894-70236146(+)$1	252	111	116	15.0000
CUUUU	chr1:226496628-226496885(-)$1	257	103	108	15.0000
CUUUU	chr7:26230497-26230748(-)$1	251	98	103	15.0000
CUUUU	chr2:71635309-71635589(+)$1	280	89	94	15.0000
CUUUU	chr11:85372497-85372753(-)$1	256	135	140	15.0000
CUUUU	chr4:152020794-152021049(+)$1	255	99	104	15.0000
CUUUU	chr1:1019491-1019808(-)$1	317	36	41	15.0000
CUUUU	chr4:83812052-83812313(-)$1	261	89	94	15.0000
CUUUU	chr11:61732574-61732821(-)$1	247	87	92	15.0000
CUUUU	chr6:160511063-160511337(+)$1	274	169	174	15.0000
Cuuuu	chr3:50098912-50099160(+)$1	248	80	85	15.0000
CUUUU	chr6:31509554-31509798(-)$1	244	150	155	15.0000
CUUUU	chr14:21462988-21463249(+)$1	261	230	235	15.0000
Cuuuu	chr14:21731296-21731540(-)$1	244	123	128	15.0000
CUUUU	chr19:51307649-51307908(-)$1	259	101	106	15.0000
CUUUU	chr12:9907049-9907258(-)$1	209	135	140	15.0000
CUUUU	chr3:3189804-3190067(+)$1	263	246	251	15.0000
CUUUU	chr12:54678034-54678282(+)$1	248	79	84	15.0000
CUUUU	chr1:25570455-25570717(-)$1	262	105	110	15.0000
CUUUU	chr17:74732044-74732300(-)$1	256	124	129	15.0000
CUUUU	chr8:117863992-117864270(-)$1	278	159	164	15.0000
CUUUU	chr7:104742571-104742869(+)$1	298	285	290	15.0000
CUUUU	chr11:75113423-75113698(+)$1	275	97	102	15.0000
CUUUU	chr2:61753369-61753629(-)$1	260	108	113	15.0000
CUUUU	chr7:42974664-42974963(+)$1	299	97	102	15.0000
CUUUU	chr14:104145831-104146108(+)$1	277	144	149	15.0000
CUUUU	chr17:74730954-74731215(-)$1	261	96	101	15.0000
CUUUU	chr1:24297876-24298130(-)$1	254	6	11	15.0000
CUUUU	chr16:2014642-2014875(-)$1	233	51	56	15.0000

#otherMatches

#Struct PSSM
f22ee	chr11:61732663-61732914(-)$1	251	180	185	15.0000
fffFF	chr4:83276240-83276532(-)$1	292	240	245	15.0000
fffmm	chr6:99848196-99848497(-)$1	301	86	91	15.0000
fffff	chr1:11083311-11083571(+)$1	260	172	177	15.0000
8888d	chr2:170429963-170430248(-)$1	285	103	108	15.0000
ffffl	chr12:98991741-98992015(+)$1	274	26	31	15.0000
HHHHH	chr12:9907008-9907249(-)$1	241	126	131	15.0000
SSSSS	chr15:45008481-45008722(+)$1	241	16	21	15.0000
>>>>>	chr3:50137412-50137683(+)$1	271	239	244	15.0000
fffff	chr6:160169357-160169583(+)$1	226	145	150	15.0000
PPFFF	chr3:14519997-14520267(+)$1	270	30	35	15.0000
ccc!!	chr1:19440005-19440262(-)$1	257	41	46	15.0000
hhhhh	chr14:70235894-70236146(+)$1	252	111	116	15.0000
^^^^^	chr1:226496628-226496885(-)$1	257	103	108	15.0000
wwbb]	chr7:26230497-26230748(-)$1	251	98	103	15.0000
:FFFF	chr2:71635309-71635589(+)$1	280	89	94	15.0000
\FFFF	chr11:85372497-85372753(-)$1	256	135	140	15.0000
eeeee	chr4:152020794-152021049(+)$1	255	99	104	15.0000
:::::	chr1:1019491-1019808(-)$1	317	36	41	15.0000
:::dd	chr4:83812052-83812313(-)$1	261	89	94	15.0000
f22ee	chr11:61732574-61732821(-)$1	247	87	92	15.0000
EEEE@	chr6:160511063-160511337(+)$1	274	169	174	15.0000
iiiii	chr3:50098912-50099160(+)$1	248	80	85	15.0000
d5555	chr6:31509554-31509798(-)$1	244	150	155	15.0000
qqqqq	chr14:21462988-21463249(+)$1	261	230	235	15.0000
::::f	chr14:21731296-21731540(-)$1	244	123	128	15.0000
ccc]g	chr19:51307649-51307908(-)$1	259	101	106	15.0000
HHHHH	chr12:9907049-9907258(-)$1	209	135	140	15.0000
e333g	chr3:3189804-3190067(+)$1	263	246	251	15.0000
dd::f	chr12:54678034-54678282(+)$1	248	79	84	15.0000
e]ddd	chr1:25570455-25570717(-)$1	262	105	110	15.0000
HHHHH	chr17:74732044-74732300(-)$1	256	124	129	15.0000
cc444	chr8:117863992-117864270(-)$1	278	159	164	15.0000
E}EEE	chr7:104742571-104742869(+)$1	298	285	290	15.0000
####g	chr11:75113423-75113698(+)$1	275	97	102	15.0000
hhhhh	chr2:61753369-61753629(-)$1	260	108	113	15.0000
hhhhh	chr7:42974664-42974963(+)$1	299	97	102	15.0000
:::::	chr14:104145831-104146108(+)$1	277	144	149	15.0000
iiiii	chr17:74730954-74731215(-)$1	261	96	101	15.0000
MMMMD	chr1:24297876-24298130(-)$1	254	6	11	15.0000
::fff	chr16:2014642-2014875(-)$1	233	51	56	15.0000

#DB
)..))	chr11:61732663-61732914(-)$1	1	180	185	15.0000
)))))	chr4:83276240-83276532(-)$1	1	240	245	15.0000
(((..	chr6:99848196-99848497(-)$1	1	86	91	15.0000
)))))	chr1:11083311-11083571(+)$1	1	172	177	15.0000
....)	chr2:170429963-170430248(-)$1	1	103	108	15.0000
((((.	chr12:98991741-98992015(+)$1	1	26	31	15.0000
)))))	chr12:9907008-9907249(-)$1	1	126	131	15.0000
.....	chr15:45008481-45008722(+)$1	1	16	21	15.0000
.....	chr3:50137412-50137683(+)$1	1	239	244	15.0000
(((((	chr6:160169357-160169583(+)$1	1	145	150	15.0000
..(((	chr3:14519997-14520267(+)$1	1	30	35	15.0000
(((..	chr1:19440005-19440262(-)$1	1	41	46	15.0000
(((((	chr14:70235894-70236146(+)$1	1	111	116	15.0000
.....	chr1:226496628-226496885(-)$1	1	103	108	15.0000
..)).	chr7:26230497-26230748(-)$1	1	98	103	15.0000
.))))	chr2:71635309-71635589(+)$1	1	89	94	15.0000
.))))	chr11:85372497-85372753(-)$1	1	135	140	15.0000
)))))	chr4:152020794-152021049(+)$1	1	99	104	15.0000
.....	chr1:1019491-1019808(-)$1	1	36	41	15.0000
...((	chr4:83812052-83812313(-)$1	1	89	94	15.0000
)..))	chr11:61732574-61732821(-)$1	1	87	92	15.0000
)))).	chr6:160511063-160511337(+)$1	1	169	174	15.0000
(((((	chr3:50098912-50099160(+)$1	1	80	85	15.0000
)....	chr6:31509554-31509798(-)$1	1	150	155	15.0000
.....	chr14:21462988-21463249(+)$1	1	230	235	15.0000
....(	chr14:21731296-21731540(-)$1	1	123	128	15.0000
))).)	chr19:51307649-51307908(-)$1	1	101	106	15.0000
)))))	chr12:9907049-9907258(-)$1	1	135	140	15.0000
)...)	chr3:3189804-3190067(+)$1	1	246	251	15.0000
))..(	chr12:54678034-54678282(+)$1	1	79	84	15.0000
).)))	chr1:25570455-25570717(-)$1	1	105	110	15.0000
)))))	chr17:74732044-74732300(-)$1	1	124	129	15.0000
))...	chr8:117863992-117864270(-)$1	1	159	164	15.0000
).)))	chr7:104742571-104742869(+)$1	1	285	290	15.0000
....(	chr11:75113423-75113698(+)$1	1	97	102	15.0000
(((((	chr2:61753369-61753629(-)$1	1	108	113	15.0000
)))))	chr7:42974664-42974963(+)$1	1	97	102	15.0000
.....	chr14:104145831-104146108(+)$1	1	144	149	15.0000
)))))	chr17:74730954-74731215(-)$1	1	96	101	15.0000
....(	chr1:24297876-24298130(-)$1	1	6	11	15.0000
..(((	chr16:2014642-2014875(-)$1	1	51	56	15.0000

#PSSM
C : 1.00	
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	

#score	615.0000000000001
#seq	41
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_CDS_m1_run1.nuc.txt

#NT
UGGGG	chr1:55517939-55518188(+)$1	249	205	210	14.9999
UGGGG	chrX:48837565-48837827(-)$1	262	236	241	14.9999
UGGGG	chr12:113723592-113723856(+)$1	264	51	56	14.9999
UGGGG	chr12:57905833-57906124(+)$1	291	80	85	14.9999
UGGGG	chr11:72410400-72410644(-)$1	244	5	10	14.9999
UGGGG	chr5:74655841-74656065(+)$1	224	3	8	14.9999
UGGGG	chr1:144865716-144866025(-)$1	309	17	22	14.9999
UGGGG	chr3:47048641-47048873(+)$1	232	219	224	14.9999
UGGGG	chr2:236658903-236659174(+)$1	271	25	30	14.9999
UGGGG	chr3:49139161-49139412(-)$1	251	174	179	14.9999
UGGGG	chr1:203028215-203028487(+)$1	272	144	149	14.9999
UGGGG	chr1:156838241-156838532(+)$1	291	0	5	14.9999
UGGGG	chrX:53620390-53620646(-)$1	256	6	11	14.9999
UGGGG	chr12:49495154-49495387(-)$1	233	19	24	14.9999
UGGGG	chr17:38176425-38176644(-)$1	219	147	152	14.9999
UGGGG	chr16:3712834-3713069(-)$1	235	161	166	14.9999
UGGGG	chr11:72396990-72397235(-)$1	245	182	187	14.9999
UGGGG	chr8:27290851-27291092(+)$1	241	40	45	14.9999
UGGGG	chr17:65199338-65199615(-)$1	277	248	253	14.9999
UGGGG	chr22:24459476-24459709(+)$1	233	155	160	14.9999
UGGGG	chr3:49137915-49138176(-)$1	261	20	25	14.9999
UGGGG	chr14:20850053-20850368(-)$1	315	50	55	14.9999
UGGGG	chr7:100173270-100173504(-)$1	234	17	22	14.9999
UGGGG	chr20:60892350-60892592(-)$1	242	66	71	14.9999
UGGGG	chr19:11362688-11362929(-)$1	241	152	157	14.9999
UGGGG	chr21:47931226-47931507(+)$1	281	222	227	14.9999
UGGGG	chr17:79226118-79226378(-)$1	260	225	230	14.9999
UGGGG	chr16:28847482-28847729(+)$1	247	31	36	14.9999
UGGGG	chr17:55478639-55478855(+)$1	216	205	210	14.9999
UGGGG	chr22:40798079-40798305(+)$1	226	173	178	14.9999
UGGGG	chrX:152960178-152960441(+)$1	263	64	69	14.9999
UGGGG	chrX:153221977-153222240(-)$1	263	81	86	14.9999
UGGGG	chr19:50180400-50180663(+)$1	263	238	243	14.9999
UGGGG	chr22:50694944-50695174(-)$1	230	65	70	14.9999
UGGGG	chr1:144880641-144880962(-)$1	321	237	242	14.9999
UGGGG	chr9:131019680-131019902(-)$1	222	42	47	14.9999
UGGGG	chrX:122765437-122765678(-)$1	241	228	233	14.9999
UGGGG	chr19:1014251-1014564(-)$1	313	58	63	14.9999
UGGGG	chr21:34883456-34883693(-)$1	237	19	24	14.9999
UGGGG	chr17:37816634-37816879(+)$1	245	179	184	14.9999
UGGGG	chr5:141026869-141027139(-)$1	270	12	17	14.9999
UGGGG	chr1:223939598-223939862(+)$1	264	40	45	14.9999
UGGGG	chr6:31603965-31604202(+)$1	237	130	135	14.9999
UGGGG	chr1:226050054-226050288(-)$1	234	198	203	14.9999
UGGGG	chrX:154019986-154020221(-)$1	235	199	204	14.9999
UGGGG	chr1:12335779-12336023(+)$1	244	3	8	14.9999
UGGGG	chr6:20781275-20781599(+)$1	324	149	154	14.9999
UGGGG	chr15:76566653-76566936(-)$1	283	221	226	14.9999
UGGGG	chr12:53702118-53702413(-)$1	295	283	288	14.9999
UGGGG	chr11:67200691-67200998(+)$1	307	56	61	14.9999
UGGGG	chr8:145657665-145657926(-)$1	261	26	31	14.9999
UGGGG	chr7:895894-896139(+)$1	245	222	227	14.9999
UGGGG	chr15:28510660-28510919(-)$1	259	121	126	14.9999

#otherMatches

#Struct PSSM
=====	chr11:67377892-67378143(+)$1	251	51	56	14.9999
iiiii	chr1:55517939-55518188(+)$1	249	205	210	14.9999
ZGGGG	chrX:48837565-48837827(-)$1	262	236	241	14.9999
[gggg	chr12:113723592-113723856(+)$1	264	51	56	14.9999
{GGGG	chr12:57905833-57906124(+)$1	291	80	85	14.9999
hhhhh	chr11:72410400-72410644(-)$1	244	5	10	14.9999
:ccc[	chr5:74655841-74656065(+)$1	224	3	8	14.9999
FKKCC	chr1:144865716-144866025(-)$1	309	17	22	14.9999
}GGGG	chr3:47048641-47048873(+)$1	232	219	224	14.9999
qqeee	chr2:236658903-236659174(+)$1	271	25	30	14.9999
HHHHH	chr3:49139161-49139412(-)$1	251	174	179	14.9999
DDDD:	chr1:203028215-203028487(+)$1	272	144	149	14.9999
:::::	chr1:156838241-156838532(+)$1	291	0	5	14.9999
F{CCC	chrX:53620390-53620646(-)$1	256	6	11	14.9999
CKKA{	chr12:49495154-49495387(-)$1	233	19	24	14.9999
qqqcc	chr17:38176425-38176644(-)$1	219	147	152	14.9999
b[ccc	chr16:3712834-3713069(-)$1	235	161	166	14.9999
KKEEE	chr11:72396990-72397235(-)$1	245	182	187	14.9999
!gggg	chr8:27290851-27291092(+)$1	241	40	45	14.9999
ggggg	chr17:65199338-65199615(-)$1	277	248	253	14.9999
ZDDDD	chr22:24459476-24459709(+)$1	233	155	160	14.9999
d]fff	chr3:49137915-49138176(-)$1	261	20	25	14.9999
22bb]	chr14:20850053-20850368(-)$1	315	50	55	14.9999
ggggg	chr7:100173270-100173504(-)$1	234	17	22	14.9999
JJJDD	chr20:60892350-60892592(-)$1	242	66	71	14.9999
dd22c	chr19:11362688-11362929(-)$1	241	152	157	14.9999
D:ddd	chr21:47931226-47931507(+)$1	281	222	227	14.9999
fffff	chr17:79226118-79226378(-)$1	260	225	230	14.9999
cc[bb	chr16:28847482-28847729(+)$1	247	31	36	14.9999
:FFFF	chr17:55478639-55478855(+)$1	216	205	210	14.9999
"ffff	chr22:40798079-40798305(+)$1	226	173	178	14.9999
ddccc	chrX:152960178-152960441(+)$1	263	64	69	14.9999
4hhhh	chrX:153221977-153222240(-)$1	263	81	86	14.9999
==]bb	chr19:50180400-50180663(+)$1	263	238	243	14.9999
d]iii	chr22:50694944-50695174(-)$1	230	65	70	14.9999
cccbb	chr1:144880641-144880962(-)$1	321	237	242	14.9999
FFFFF	chr9:131019680-131019902(-)$1	222	42	47	14.9999
EEEEE	chrX:122765437-122765678(-)$1	241	228	233	14.9999
:ffff	chr19:1014251-1014564(-)$1	313	58	63	14.9999
HHHHH	chr21:34883456-34883693(-)$1	237	19	24	14.9999
IIIIc	chr17:37816634-37816879(+)$1	245	179	184	14.9999
CCJJJ	chr5:141026869-141027139(-)$1	270	12	17	14.9999
eeddd	chr1:223939598-223939862(+)$1	264	40	45	14.9999
!gggg	chr6:31603965-31604202(+)$1	237	130	135	14.9999
eeeee	chr1:226050054-226050288(-)$1	234	198	203	14.9999
GGGGG	chrX:154019986-154020221(-)$1	235	199	204	14.9999
BBKKD	chr1:12335779-12336023(+)$1	244	3	8	14.9999
cdddd	chr6:20781275-20781599(+)$1	324	149	154	14.9999
YYFFF	chr15:76566653-76566936(-)$1	283	221	226	14.9999
ddddc	chr12:53702118-53702413(-)$1	295	283	288	14.9999
oeeee	chr11:67200691-67200998(+)$1	307	56	61	14.9999
!dddd	chr8:145657665-145657926(-)$1	261	26	31	14.9999
EEEEE	chr7:895894-896139(+)$1	245	222	227	14.9999
ddd[b	chr15:28510660-28510919(-)$1	259	121	126	14.9999

#DB
)))))	chr11:67377892-67378143(+)$1	1	51	56	14.9999
)))))	chr1:55517939-55518188(+)$1	1	205	210	14.9999
.))))	chrX:48837565-48837827(-)$1	1	236	241	14.9999
.((((	chr12:113723592-113723856(+)$1	1	51	56	14.9999
.((((	chr12:57905833-57906124(+)$1	1	80	85	14.9999
(((((	chr11:72410400-72410644(-)$1	1	5	10	14.9999
.(((.	chr5:74655841-74656065(+)$1	1	3	8	14.9999
(..((	chr1:144865716-144866025(-)$1	1	17	22	14.9999
.))))	chr3:47048641-47048873(+)$1	1	219	224	14.9999
..)))	chr2:236658903-236659174(+)$1	1	25	30	14.9999
)))))	chr3:49139161-49139412(-)$1	1	174	179	14.9999
((((.	chr1:203028215-203028487(+)$1	1	144	149	14.9999
.....	chr1:156838241-156838532(+)$1	1	0	5	14.9999
(.(((	chrX:53620390-53620646(-)$1	1	6	11	14.9999
(..(.	chr12:49495154-49495387(-)$1	1	19	24	14.9999
...))	chr17:38176425-38176644(-)$1	1	147	152	14.9999
(.(((	chr16:3712834-3713069(-)$1	1	161	166	14.9999
..(((	chr11:72396990-72397235(-)$1	1	182	187	14.9999
.((((	chr8:27290851-27291092(+)$1	1	40	45	14.9999
)))))	chr17:65199338-65199615(-)$1	1	248	253	14.9999
.))))	chr22:24459476-24459709(+)$1	1	155	160	14.9999
).)))	chr3:49137915-49138176(-)$1	1	20	25	14.9999
..)).	chr14:20850053-20850368(-)$1	1	50	55	14.9999
(((((	chr7:100173270-100173504(-)$1	1	17	22	14.9999
(((((	chr20:60892350-60892592(-)$1	1	66	71	14.9999
))..)	chr19:11362688-11362929(-)$1	1	152	157	14.9999
).(((	chr21:47931226-47931507(+)$1	1	222	227	14.9999
)))))	chr17:79226118-79226378(-)$1	1	225	230	14.9999
((.((	chr16:28847482-28847729(+)$1	1	31	36	14.9999
.))))	chr17:55478639-55478855(+)$1	1	205	210	14.9999
.((((	chr22:40798079-40798305(+)$1	1	173	178	14.9999
))(((	chrX:152960178-152960441(+)$1	1	64	69	14.9999
.))))	chrX:153221977-153222240(-)$1	1	81	86	14.9999
)).))	chr19:50180400-50180663(+)$1	1	238	243	14.9999
).)))	chr22:50694944-50695174(-)$1	1	65	70	14.9999
)))))	chr1:144880641-144880962(-)$1	1	237	242	14.9999
(((((	chr9:131019680-131019902(-)$1	1	42	47	14.9999
)))))	chrX:122765437-122765678(-)$1	1	228	233	14.9999
.((((	chr19:1014251-1014564(-)$1	1	58	63	14.9999
(((((	chr21:34883456-34883693(-)$1	1	19	24	14.9999
(((((	chr17:37816634-37816879(+)$1	1	179	184	14.9999
(((((	chr5:141026869-141027139(-)$1	1	12	17	14.9999
)))))	chr1:223939598-223939862(+)$1	1	40	45	14.9999
.((((	chr6:31603965-31604202(+)$1	1	130	135	14.9999
)))))	chr1:226050054-226050288(-)$1	1	198	203	14.9999
)))))	chrX:154019986-154020221(-)$1	1	199	204	14.9999
((..(	chr1:12335779-12336023(+)$1	1	3	8	14.9999
)))))	chr6:20781275-20781599(+)$1	1	149	154	14.9999
..)))	chr15:76566653-76566936(-)$1	1	221	226	14.9999
)))))	chr12:53702118-53702413(-)$1	1	283	288	14.9999
.))))	chr11:67200691-67200998(+)$1	1	56	61	14.9999
.((((	chr8:145657665-145657926(-)$1	1	26	31	14.9999
)))))	chr7:895894-896139(+)$1	1	222	227	14.9999
(((.(	chr15:28510660-28510919(-)$1	1	121	126	14.9999

#PSSM
U : 0.99	
G : 0.99	
G : 0.99	
G : 0.99	
G : 0.99	

#score	809.9999999999995
#seq	54
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_CDS_m1_run1.nuc.txt

#NT
GGG	chr20:34240649-34240948(-)$1	299	13	16	8.9999
GGG	chr21:34923316-34923567(+)$1	251	12	15	8.9999
GGG	chr19:57325425-57325737(-)$1	312	91	94	8.9999
GGG	chr17:17069720-17069957(+)$1	237	9	12	8.9999
GGG	chr2:97482293-97482571(+)$1	278	2	5	8.9999
GGG	chr5:73931125-73931377(-)$1	252	102	105	8.9999
GGG	chr17:37618278-37618527(+)$1	249	7	10	8.9999
GGG	chr22:21799735-21800003(+)$1	268	90	93	8.9999
ggg	chr6:1313092-1313365(+)$1	273	5	8	8.9999
GGG	chr4:982812-983089(-)$1	277	48	51	8.9999
GGG	chr19:50099510-50099770(+)$1	260	50	53	8.9999
GGG	chr9:138378804-138379087(+)$1	283	134	137	8.9999
GGG	chr6:138751709-138751948(-)$1	239	162	165	8.9999
GGG	chr19:50155829-50156125(+)$1	296	21	24	8.9999
GGG	chr11:65381003-65381252(-)$1	249	64	67	8.9999
GGG	chr2:227660122-227660369(-)$1	247	50	53	8.9999
GGG	chr20:25456989-25457255(-)$1	266	74	77	8.9999
GGG	chr20:61542591-61542833(-)$1	242	39	42	8.9999
GGG	chr2:220435678-220435932(-)$1	254	1	4	8.9999
GGG	chr21:34923018-34923282(+)$1	264	69	72	8.9999
GGG	chr11:607176-607427(+)$1	251	23	26	8.9999
GGG	chr10:77159500-77159768(-)$1	268	34	37	8.9999
GGG	chr6:1312808-1313077(+)$1	269	1	4	8.9999
GGG	chr20:306926-307181(+)$1	255	56	59	8.9999
GGG	chr7:1097271-1097520(-)$1	249	5	8	8.9999
GGG	chr17:80197768-80198012(+)$1	244	54	57	8.9999
GGG	chr16:31091061-31091340(+)$1	279	9	12	8.9999
GGG	chr19:46215899-46216200(-)$1	301	79	82	8.9999
ggg	chr22:41832354-41832607(-)$1	253	91	94	8.9999
GGG	chr6:138745216-138745473(-)$1	257	15	18	8.9999
GGG	chr7:77166609-77166977(+)$1	368	30	33	8.9999
GGG	chr6:138752916-138753217(-)$1	301	16	19	8.9999
GGG	chr22:45724171-45724398(+)$1	227	23	26	8.9999
GGG	chr11:65380763-65381009(-)$1	246	24	27	8.9999
GGG	chr20:31022797-31023049(+)$1	252	104	107	8.9999
GGG	chr6:138752171-138752414(-)$1	243	75	78	8.9999
GGG	chr2:227659953-227660188(-)$1	235	13	16	8.9999
GGG	chr16:8952197-8952547(+)$1	350	32	35	8.9999
GGG	chr14:59931821-59932119(-)$1	298	141	144	8.9999
GGG	chr17:43227199-43227497(+)$1	298	40	43	8.9999
GGG	chr22:50279969-50280274(+)$1	305	60	63	8.9999
GGG	chr12:19592489-19592759(+)$1	270	16	19	8.9999
GGG	chr2:227661858-227662103(-)$1	245	52	55	8.9999
GGG	chr6:1313306-1313544(+)$1	238	40	43	8.9999
GGG	chr8:144940504-144940777(-)$1	273	18	21	8.9999
GGG	chr10:43882509-43882767(-)$1	258	56	59	8.9999
GGG	chr8:144940403-144940695(-)$1	292	26	29	8.9999
GGG	chr6:31599833-31600091(+)$1	258	3	6	8.9999
GGG	chr9:138378097-138378378(+)$1	281	28	31	8.9999
GGG	chr20:31024427-31024653(+)$1	226	9	12	8.9999
GGG	chr8:94746313-94746586(-)$1	273	11	14	8.9999
GGG	chr6:1312877-1313150(+)$1	273	27	30	8.9999
GGG	chr16:87735916-87736163(-)$1	247	12	15	8.9999
GGG	chr16:8953051-8953357(+)$1	306	2	5	8.9999
GGG	chr16:89346902-89347153(-)$1	251	11	14	8.9999
GGG	chr17:38279291-38279539(+)$1	248	28	31	8.9999
ggg	chr2:236579462-236579692(+)$1	230	32	35	8.9999
GGG	chr7:1132118-1132411(-)$1	293	5	8	8.9999
GGG	chr3:32932361-32932613(+)$1	252	5	8	8.9999
GGG	chr17:42255524-42255827(-)$1	303	18	21	8.9999
GGG	chr16:72992007-72992257(-)$1	250	42	45	8.9999
GGG	chr8:94752512-94752806(-)$1	294	30	33	8.9999
GGG	chr19:59074102-59074382(+)$1	280	89	92	8.9999
GGG	chr2:171570277-171570567(-)$1	290	19	22	8.9999
GGG	chr10:77159156-77159405(-)$1	249	22	25	8.9999
GGG	chrX:153774925-153775180(+)$1	255	31	34	8.9999
GGG	chr10:101379892-101380167(-)$1	275	5	8	8.9999
ggg	chr6:170123909-170124170(-)$1	261	4	7	8.9999
GGG	chr19:56127160-56127441(+)$1	281	77	80	8.9999
GGG	chr20:52197986-52198313(-)$1	327	131	134	8.9999
GGG	chr9:138377885-138378189(+)$1	304	115	118	8.9999
GGG	chr16:1827054-1827309(+)$1	255	0	3	8.9999
GGG	chr20:61443866-61444132(+)$1	266	15	18	8.9999
GGG	chr9:138379041-138379297(+)$1	256	1	4	8.9999
GGG	chr8:144671768-144671997(-)$1	229	28	31	8.9999
ggg	chr14:105715205-105715474(-)$1	269	4	7	8.9999
ggg	chr16:89348397-89348653(-)$1	256	100	103	8.9999
GGG	chr10:77159385-77159681(-)$1	296	13	16	8.9999
GGG	chr8:144671496-144671750(-)$1	254	22	25	8.9999
GGG	chr14:105715428-105715730(-)$1	302	36	39	8.9999
GGG	chr22:45724198-45724429(+)$1	231	1	4	8.9999
GGG	chr5:139493777-139494046(+)$1	269	18	21	8.9999
GGG	chr8:144671550-144671842(-)$1	292	24	27	8.9999
GGG	chr11:71725465-71725716(-)$1	251	35	38	8.9999
GGG	chr20:61443936-61444221(+)$1	285	8	11	8.9999
GGG	chr7:1131288-1131550(-)$1	262	62	65	8.9999
GGG	chr17:17698607-17698864(+)$1	257	27	30	8.9999
GGG	chr16:89346251-89346497(-)$1	246	52	55	8.9999
GGG	chr22:45126647-45126881(+)$1	234	41	44	8.9999
GGG	chr2:227660379-227660638(-)$1	259	21	24	8.9999
GGG	chr2:227662866-227663182(-)$1	316	81	84	8.9999
GGG	chr16:30793060-30793330(-)$1	270	2	5	8.9999
GGG	chr19:57325904-57326156(-)$1	252	10	13	8.9999
GGG	chr6:138754562-138754818(-)$1	256	96	99	8.9999
GGG	chr20:31024268-31024498(+)$1	230	112	115	8.9999
GGG	chr6:31599458-31599730(+)$1	272	23	26	8.9999
GGG	chr22:50277368-50277649(+)$1	281	107	110	8.9999
GGG	chr16:87735789-87736041(-)$1	252	9	12	8.9999

#otherMatches

#Struct PSSM
!!f	chr16:24801582-24801828(+)$1	246	57	60	8.9999
ee:	chr20:34240649-34240948(-)$1	299	13	16	8.9999
[cc	chr21:34923316-34923567(+)$1	251	12	15	8.9999
hhh	chr19:57325425-57325737(-)$1	312	91	94	8.9999
ccc	chr17:17069720-17069957(+)$1	237	9	12	8.9999
:CC	chr2:97482293-97482571(+)$1	278	2	5	8.9999
:::	chr5:73931125-73931377(-)$1	252	102	105	8.9999
{CC	chr17:37618278-37618527(+)$1	249	7	10	8.9999
iii	chr22:21799735-21800003(+)$1	268	90	93	8.9999
nnn	chr6:1313092-1313365(+)$1	273	5	8	8.9999
mff	chr4:982812-983089(-)$1	277	48	51	8.9999
ggg	chr19:50099510-50099770(+)$1	260	50	53	8.9999
ggg	chr9:138378804-138379087(+)$1	283	134	137	8.9999
ccc	chr6:138751709-138751948(-)$1	239	162	165	8.9999
ddd	chr19:50155829-50156125(+)$1	296	21	24	8.9999
eee	chr11:65381003-65381252(-)$1	249	64	67	8.9999
vvv	chr2:227660122-227660369(-)$1	247	50	53	8.9999
:ee	chr20:25456989-25457255(-)$1	266	74	77	8.9999
"""	chr20:61542591-61542833(-)$1	242	39	42	8.9999
ddd	chr2:220435678-220435932(-)$1	254	1	4	8.9999
"ff	chr21:34923018-34923282(+)$1	264	69	72	8.9999
EEE	chr11:607176-607427(+)$1	251	23	26	8.9999
mmm	chr10:77159500-77159768(-)$1	268	34	37	8.9999
:::	chr6:1312808-1313077(+)$1	269	1	4	8.9999
fff	chr20:306926-307181(+)$1	255	56	59	8.9999
===	chr7:1097271-1097520(-)$1	249	5	8	8.9999
ggm	chr17:80197768-80198012(+)$1	244	54	57	8.9999
DDF	chr16:31091061-31091340(+)$1	279	9	12	8.9999
4gg	chr19:46215899-46216200(-)$1	301	79	82	8.9999
ccc	chr22:41832354-41832607(-)$1	253	91	94	8.9999
EEE	chr6:138745216-138745473(-)$1	257	15	18	8.9999
ff!	chr7:77166609-77166977(+)$1	368	30	33	8.9999
ddc	chr6:138752916-138753217(-)$1	301	16	19	8.9999
cc:	chr22:45724171-45724398(+)$1	227	23	26	8.9999
$$$	chr11:65380763-65381009(-)$1	246	24	27	8.9999
EEE	chr20:31022797-31023049(+)$1	252	104	107	8.9999
ddd	chr6:138752171-138752414(-)$1	243	75	78	8.9999
DDD	chr2:227659953-227660188(-)$1	235	13	16	8.9999
ggg	chr16:8952197-8952547(+)$1	350	32	35	8.9999
CCC	chr14:59931821-59932119(-)$1	298	141	144	8.9999
ggg	chr17:43227199-43227497(+)$1	298	40	43	8.9999
qqb	chr22:50279969-50280274(+)$1	305	60	63	8.9999
ccc	chr12:19592489-19592759(+)$1	270	16	19	8.9999
KA{	chr2:227661858-227662103(-)$1	245	52	55	8.9999
ee2	chr6:1313306-1313544(+)$1	238	40	43	8.9999
iii	chr8:144940504-144940777(-)$1	273	18	21	8.9999
eee	chr10:43882509-43882767(-)$1	258	56	59	8.9999
DDD	chr8:144940403-144940695(-)$1	292	26	29	8.9999
ggg	chr6:31599833-31600091(+)$1	258	3	6	8.9999
EEE	chr9:138378097-138378378(+)$1	281	28	31	8.9999
eee	chr20:31024427-31024653(+)$1	226	9	12	8.9999
JJJ	chr8:94746313-94746586(-)$1	273	11	14	8.9999
eee	chr6:1312877-1313150(+)$1	273	27	30	8.9999
fff	chr16:87735916-87736163(-)$1	247	12	15	8.9999
:HH	chr16:8953051-8953357(+)$1	306	2	5	8.9999
fff	chr16:89346902-89347153(-)$1	251	11	14	8.9999
[aq	chr17:38279291-38279539(+)$1	248	28	31	8.9999
dd[	chr2:236579462-236579692(+)$1	230	32	35	8.9999
:::	chr7:1132118-1132411(-)$1	293	5	8	8.9999
EEE	chr3:32932361-32932613(+)$1	252	5	8	8.9999
ddc	chr17:42255524-42255827(-)$1	303	18	21	8.9999
GGG	chr16:72992007-72992257(-)$1	250	42	45	8.9999
III	chr8:94752512-94752806(-)$1	294	30	33	8.9999
ccc	chr19:59074102-59074382(+)$1	280	89	92	8.9999
ggq	chr2:171570277-171570567(-)$1	290	19	22	8.9999
eee	chr10:77159156-77159405(-)$1	249	22	25	8.9999
eee	chrX:153774925-153775180(+)$1	255	31	34	8.9999
:::	chr10:101379892-101380167(-)$1	275	5	8	8.9999
CCC	chr6:170123909-170124170(-)$1	261	4	7	8.9999
GGG	chr19:56127160-56127441(+)$1	281	77	80	8.9999
[bb	chr20:52197986-52198313(-)$1	327	131	134	8.9999
CBB	chr9:138377885-138378189(+)$1	304	115	118	8.9999
:ff	chr16:1827054-1827309(+)$1	255	0	3	8.9999
HHH	chr20:61443866-61444132(+)$1	266	15	18	8.9999
ccc	chr9:138379041-138379297(+)$1	256	1	4	8.9999
c[a	chr8:144671768-144671997(-)$1	229	28	31	8.9999
CC{	chr14:105715205-105715474(-)$1	269	4	7	8.9999
ddd	chr16:89348397-89348653(-)$1	256	100	103	8.9999
CCC	chr10:77159385-77159681(-)$1	296	13	16	8.9999
FFF	chr8:144671496-144671750(-)$1	254	22	25	8.9999
cc2	chr14:105715428-105715730(-)$1	302	36	39	8.9999
EEE	chr22:45724198-45724429(+)$1	231	1	4	8.9999
oa]	chr5:139493777-139494046(+)$1	269	18	21	8.9999
ddd	chr8:144671550-144671842(-)$1	292	24	27	8.9999
bbm	chr11:71725465-71725716(-)$1	251	35	38	8.9999
EEE	chr20:61443936-61444221(+)$1	285	8	11	8.9999
ddd	chr7:1131288-1131550(-)$1	262	62	65	8.9999
ccc	chr17:17698607-17698864(+)$1	257	27	30	8.9999
{FF	chr16:89346251-89346497(-)$1	246	52	55	8.9999
FFF	chr22:45126647-45126881(+)$1	234	41	44	8.9999
dmm	chr2:227660379-227660638(-)$1	259	21	24	8.9999
fff	chr2:227662866-227663182(-)$1	316	81	84	8.9999
EEE	chr16:30793060-30793330(-)$1	270	2	5	8.9999
GGG	chr19:57325904-57326156(-)$1	252	10	13	8.9999
dd#	chr6:138754562-138754818(-)$1	256	96	99	8.9999
eee	chr20:31024268-31024498(+)$1	230	112	115	8.9999
cc!	chr6:31599458-31599730(+)$1	272	23	26	8.9999
eee	chr22:50277368-50277649(+)$1	281	107	110	8.9999
JJJ	chr16:87735789-87736041(-)$1	252	9	12	8.9999

#DB
..(	chr16:24801582-24801828(+)$1	1	57	60	8.9999
)).	chr20:34240649-34240948(-)$1	1	13	16	8.9999
.((	chr21:34923316-34923567(+)$1	1	12	15	8.9999
)))	chr19:57325425-57325737(-)$1	1	91	94	8.9999
(((	chr17:17069720-17069957(+)$1	1	9	12	8.9999
.((	chr2:97482293-97482571(+)$1	1	2	5	8.9999
...	chr5:73931125-73931377(-)$1	1	102	105	8.9999
.((	chr17:37618278-37618527(+)$1	1	7	10	8.9999
)))	chr22:21799735-21800003(+)$1	1	90	93	8.9999
...	chr6:1313092-1313365(+)$1	1	5	8	8.9999
.))	chr4:982812-983089(-)$1	1	48	51	8.9999
(((	chr19:50099510-50099770(+)$1	1	50	53	8.9999
(((	chr9:138378804-138379087(+)$1	1	134	137	8.9999
)))	chr6:138751709-138751948(-)$1	1	162	165	8.9999
(((	chr19:50155829-50156125(+)$1	1	21	24	8.9999
)))	chr11:65381003-65381252(-)$1	1	64	67	8.9999
...	chr2:227660122-227660369(-)$1	1	50	53	8.9999
.((	chr20:25456989-25457255(-)$1	1	74	77	8.9999
...	chr20:61542591-61542833(-)$1	1	39	42	8.9999
(((	chr2:220435678-220435932(-)$1	1	1	4	8.9999
.((	chr21:34923018-34923282(+)$1	1	69	72	8.9999
(((	chr11:607176-607427(+)$1	1	23	26	8.9999
...	chr10:77159500-77159768(-)$1	1	34	37	8.9999
...	chr6:1312808-1313077(+)$1	1	1	4	8.9999
)))	chr20:306926-307181(+)$1	1	56	59	8.9999
(((	chr7:1097271-1097520(-)$1	1	5	8	8.9999
((.	chr17:80197768-80198012(+)$1	1	54	57	8.9999
(((	chr16:31091061-31091340(+)$1	1	9	12	8.9999
.))	chr19:46215899-46216200(-)$1	1	79	82	8.9999
)))	chr22:41832354-41832607(-)$1	1	91	94	8.9999
(((	chr6:138745216-138745473(-)$1	1	15	18	8.9999
((.	chr7:77166609-77166977(+)$1	1	30	33	8.9999
(((	chr6:138752916-138753217(-)$1	1	16	19	8.9999
)).	chr22:45724171-45724398(+)$1	1	23	26	8.9999
...	chr11:65380763-65381009(-)$1	1	24	27	8.9999
(((	chr20:31022797-31023049(+)$1	1	104	107	8.9999
(((	chr6:138752171-138752414(-)$1	1	75	78	8.9999
(((	chr2:227659953-227660188(-)$1	1	13	16	8.9999
(((	chr16:8952197-8952547(+)$1	1	32	35	8.9999
)))	chr14:59931821-59932119(-)$1	1	141	144	8.9999
)))	chr17:43227199-43227497(+)$1	1	40	43	8.9999
..)	chr22:50279969-50280274(+)$1	1	60	63	8.9999
)))	chr12:19592489-19592759(+)$1	1	16	19	8.9999
.(.	chr2:227661858-227662103(-)$1	1	52	55	8.9999
)).	chr6:1313306-1313544(+)$1	1	40	43	8.9999
(((	chr8:144940504-144940777(-)$1	1	18	21	8.9999
(((	chr10:43882509-43882767(-)$1	1	56	59	8.9999
(((	chr8:144940403-144940695(-)$1	1	26	29	8.9999
(((	chr6:31599833-31600091(+)$1	1	3	6	8.9999
(((	chr9:138378097-138378378(+)$1	1	28	31	8.9999
(((	chr20:31024427-31024653(+)$1	1	9	12	8.9999
(((	chr8:94746313-94746586(-)$1	1	11	14	8.9999
(((	chr6:1312877-1313150(+)$1	1	27	30	8.9999
(((	chr16:87735916-87736163(-)$1	1	12	15	8.9999
.((	chr16:8953051-8953357(+)$1	1	2	5	8.9999
(((	chr16:89346902-89347153(-)$1	1	11	14	8.9999
.(.	chr17:38279291-38279539(+)$1	1	28	31	8.9999
((.	chr2:236579462-236579692(+)$1	1	32	35	8.9999
...	chr7:1132118-1132411(-)$1	1	5	8	8.9999
(((	chr3:32932361-32932613(+)$1	1	5	8	8.9999
)))	chr17:42255524-42255827(-)$1	1	18	21	8.9999
(((	chr16:72992007-72992257(-)$1	1	42	45	8.9999
(((	chr8:94752512-94752806(-)$1	1	30	33	8.9999
)))	chr19:59074102-59074382(+)$1	1	89	92	8.9999
((.	chr2:171570277-171570567(-)$1	1	19	22	8.9999
)))	chr10:77159156-77159405(-)$1	1	22	25	8.9999
(((	chrX:153774925-153775180(+)$1	1	31	34	8.9999
...	chr10:101379892-101380167(-)$1	1	5	8	8.9999
(((	chr6:170123909-170124170(-)$1	1	4	7	8.9999
)))	chr19:56127160-56127441(+)$1	1	77	80	8.9999
.((	chr20:52197986-52198313(-)$1	1	131	134	8.9999
(((	chr9:138377885-138378189(+)$1	1	115	118	8.9999
.((	chr16:1827054-1827309(+)$1	1	0	3	8.9999
(((	chr20:61443866-61444132(+)$1	1	15	18	8.9999
(((	chr9:138379041-138379297(+)$1	1	1	4	8.9999
(.(	chr8:144671768-144671997(-)$1	1	28	31	8.9999
((.	chr14:105715205-105715474(-)$1	1	4	7	8.9999
)))	chr16:89348397-89348653(-)$1	1	100	103	8.9999
(((	chr10:77159385-77159681(-)$1	1	13	16	8.9999
(((	chr8:144671496-144671750(-)$1	1	22	25	8.9999
)).	chr14:105715428-105715730(-)$1	1	36	39	8.9999
(((	chr22:45724198-45724429(+)$1	1	1	4	8.9999
.).	chr5:139493777-139494046(+)$1	1	18	21	8.9999
(((	chr8:144671550-144671842(-)$1	1	24	27	8.9999
((.	chr11:71725465-71725716(-)$1	1	35	38	8.9999
(((	chr20:61443936-61444221(+)$1	1	8	11	8.9999
(((	chr7:1131288-1131550(-)$1	1	62	65	8.9999
(((	chr17:17698607-17698864(+)$1	1	27	30	8.9999
.((	chr16:89346251-89346497(-)$1	1	52	55	8.9999
(((	chr22:45126647-45126881(+)$1	1	41	44	8.9999
(..	chr2:227660379-227660638(-)$1	1	21	24	8.9999
(((	chr2:227662866-227663182(-)$1	1	81	84	8.9999
(((	chr16:30793060-30793330(-)$1	1	2	5	8.9999
(((	chr19:57325904-57326156(-)$1	1	10	13	8.9999
((.	chr6:138754562-138754818(-)$1	1	96	99	8.9999
)))	chr20:31024268-31024498(+)$1	1	112	115	8.9999
((.	chr6:31599458-31599730(+)$1	1	23	26	8.9999
(((	chr22:50277368-50277649(+)$1	1	107	110	8.9999
(((	chr16:87735789-87736041(-)$1	1	9	12	8.9999

#PSSM
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_transcript_m1_run1.nuc.txt

#NT
gcgcggcggccgccg	chr19:18717334-18717554(-)$1	220	124	139	22.8260
AGACGGCGGCGGCGU	chr1:9188926-9189206(-)$1	280	45	60	22.2826
GGGAGGCGCCCGCGG	chr2:95787537-95787838(-)$1	301	87	102	23.1521
gcgcggcugcggcgg	chr14:102975940-102976186(-)$1	246	174	189	26.3043
AGGCGGCGGCGGCGG	chr4:141677075-141677351(-)$1	276	259	274	30.8695
gggcggcggcggccg	chr12:129308197-129308614(-)$1	417	181	196	30.1086
GGCAGGCGGCAGCGG	chr3:52478836-52479184(-)$1	348	108	123	22.6086
CGGCGGCGGCCGCGG	chr1:117910027-117910286(+)$1	259	64	79	27.9347
ccgcggcgacggcgg	chr1:8086114-8086380(-)$1	266	4	19	23.8043
uggcggcggcggcgg	chr4:22517420-22517712(-)$1	292	25	40	30.8695
gggccggggcggggg	chr1:2126030-2126294(-)$1	264	33	48	21.8478
uggcggcggcgggcg	chr1:1167678-1167981(+)$1	303	1	16	22.7173
gggcggcggcggcAG	chr19:572473-572802(+)$1	329	109	124	29.6739
GGCCGGCGGCCGAGG	chr13:39611725-39612011(-)$1	286	134	149	22.3913
gggcgcccgcggcgg	chr4:166300354-166300601(+)$1	247	110	125	25.3260
GGCGGGCGGCCGCGG	chr2:9563060-9563317(-)$1	257	75	90	22.7173
GUGCGGCGGCGACCG	chr2:96931998-96932328(+)$1	330	188	203	21.7391
gggaggcgggggcgg	chr17:75369316-75369618(+)$1	302	38	53	26.8478
GGGCUGGGGCGGCGG	chr7:5434050-5434317(-)$1	267	28	43	26.0869
cggcggcgguggcgg	chr17:30264099-30264377(+)$1	278	248	263	27.7173
cggcggcggcggcgg	chr1:154530937-154531239(-)$1	302	116	131	31.5217
CGGCGGCUGCUGCGG	chr9:127962950-127963225(+)$1	275	145	160	23.6956
AGGCGGCGCUGGCGG	chr18:11981518-11981779(+)$1	261	172	187	23.5869
GAGCGGCGGAGCCGG	chr2:187454705-187454913(+)$1	208	102	117	22.2826
CGGCGGCGCCGGCGG	chr8:61429424-61429794(+)$1	370	51	66	28.0434
GAgcggcggcggcgg	chr8:120220505-120220793(+)$1	288	117	132	30.4347
gggcgggggcggccg	chr1:36789006-36789320(-)$1	314	183	198	26.7391
GGCCAGCCGCGGCGG	chr5:139028117-139028393(+)$1	276	143	158	22.0652
gggcggcggcggcgg	chr12:118498820-118499060(-)$1	240	96	111	33.9130
GGGCGGAUGGGGCGG	chr20:33680317-33680572(-)$1	255	62	77	22.9347
CAGCGGCGGGGGCGG	chr15:41576144-41576395(+)$1	251	5	20	24.6739
gagcggcggcggcgc	chr16:52580816-52581137(-)$1	321	7	22	26.1956
GGGCGGCCGCGGAGG	chr18:9614377-9614636(-)$1	259	123	138	25.7608
cggcggcggcggcgg	chr5:133707105-133707347(+)$1	242	59	74	31.5217
gggaggagccggcgg	chr7:158380330-158380573(-)$1	243	111	126	23.0434
UGGCGGCGGCGCCGG	chr16:67225976-67226292(+)$1	316	98	113	26.6304
ggccggggucggcgg	chr2:132249685-132249949(-)$1	264	25	40	22.9347
GGGAGGCGCGGGCGG	chr7:140396431-140396748(+)$1	317	32	47	23.3695
ggggggccgcggcgc	chr3:33155453-33155706(+)$1	253	132	147	21.8478
GGCCGGAGGCUGCGG	chr10:35104021-35104277(-)$1	256	102	117	22.7173
cggcggcgggggcgg	chr2:32582189-32582476(+)$1	287	167	182	28.1521
gggccggggcggcgg	chr19:662990-663279(-)$1	289	242	257	26.1956
gggcggcggcggcgg	chr20:31331033-31331350(-)$1	317	110	125	33.9130
Gggcggcggcggcgg	chr13:98086498-98086834(+)$1	336	192	207	33.9130
GAGCGGCGGCGCCGC	chr2:74692295-74692525(-)$1	230	163	178	21.9565

#otherMatches

#Struct PSSM
cJJJJJJJJJJJCCC	chr14:104182026-104182365(+)$1	339	76	91	23.6956
=========::bb[b	chr19:18717334-18717554(-)$1	220	124	139	22.8260
bbDDDD{DDDDJJJJ	chr1:9188926-9189206(-)$1	280	45	60	22.2826
oooccc]ddddhhhh	chr2:95787537-95787838(-)$1	301	87	102	23.1521
ppbb]gggggggddd	chr14:102975940-102976186(-)$1	246	174	189	26.3043
}JJJJJJJJJJJJJJ	chr4:141677075-141677351(-)$1	276	259	274	30.8695
f[bb!!ggggggg!!	chr12:129308197-129308614(-)$1	417	181	196	30.1086
EFFFFFFeeeee[bb	chr3:52478836-52479184(-)$1	348	108	123	22.6086
eeeemmmmeeeee==	chr1:117910027-117910286(+)$1	259	64	79	27.9347
FFFFBBLLLEEEEE{	chr1:8086114-8086380(-)$1	266	4	19	23.8043
DDD{DDDDIIIIIII	chr4:22517420-22517712(-)$1	292	25	40	30.8695
======GGGGGGGCC	chr1:2126030-2126294(-)$1	264	33	48	21.8478
:IIIIIIIII=====	chr1:1167678-1167981(+)$1	303	1	16	22.7173
nnnnneeeee]bbee	chr19:572473-572802(+)$1	329	109	124	29.6739
dd[ffffff!!dddd	chr13:39611725-39612011(-)$1	286	134	149	22.3913
6666ffffffeeeee	chr4:166300354-166300601(+)$1	247	110	125	25.3260
gg[hhhhhhhhlllh	chr2:9563060-9563317(-)$1	257	75	90	22.7173
ffffffccclllccc	chr2:96931998-96932328(+)$1	330	188	203	21.7391
dd:::DDDDFFFFFF	chr17:75369316-75369618(+)$1	302	38	53	26.8478
JJFFFFFFcccmmmm	chr7:5434050-5434317(-)$1	267	28	43	26.0869
ccc[ccc[bb[bbmm	chr17:30264099-30264377(+)$1	278	248	263	27.7173
[ccc!!bb[bb[bb[	chr1:154530937-154531239(-)$1	302	116	131	31.5217
eeeehhhhhhhh!!b	chr9:127962950-127963225(+)$1	275	145	160	23.6956
!!===========[b	chr18:11981518-11981779(+)$1	261	172	187	23.5869
=====dddd[bb[cc	chr2:187454705-187454913(+)$1	208	102	117	22.2826
eeeellleeeeeGGG	chr8:61429424-61429794(+)$1	370	51	66	28.0434
d[bbmmmmbb22ddd	chr8:120220505-120220793(+)$1	288	117	132	30.4347
]gggggggggggggg	chr1:36789006-36789320(-)$1	314	183	198	26.7391
ddda[eeeee[dddd	chr5:139028117-139028393(+)$1	276	143	158	22.0652
eeeee22eeeee]cc	chr12:118498820-118499060(-)$1	240	96	111	33.9130
JJbbpppppppbb:F	chr20:33680317-33680572(-)$1	255	62	77	22.9347
epppppppeeeee:A	chr15:41576144-41576395(+)$1	251	5	20	24.6739
GGGGGG{FFFFFF{E	chr16:52580816-52581137(-)$1	321	7	22	26.1956
GGGGGGG}A}HHHHH	chr18:9614377-9614636(-)$1	259	123	138	25.7608
cc[bb[bbmmmmbb]	chr5:133707105-133707347(+)$1	242	59	74	31.5217
iiiiii[eeeeeccc	chr7:158380330-158380573(-)$1	243	111	126	23.0434
:JJJJJJJJJJJJJJ	chr16:67225976-67226292(+)$1	316	98	113	26.6304
JJJJJJKKCCCEEEE	chr2:132249685-132249949(-)$1	264	25	40	22.9347
fffffddddpppppp	chr7:140396431-140396748(+)$1	317	32	47	23.3695
ggggggg[dddd[dd	chr3:33155453-33155706(+)$1	253	132	147	21.8478
b]dddd]eeeeeDDD	chr10:35104021-35104277(-)$1	256	102	117	22.7173
mffffff]eeeee]e	chr2:32582189-32582476(+)$1	287	167	182	28.1521
ddddgggggggdddd	chr19:662990-663279(-)$1	289	242	257	26.1956
eebb[bbmmmmbb]b	chr20:31331033-31331350(-)$1	317	110	125	33.9130
EEEEE}JJJJJJJJJ	chr13:98086498-98086834(+)$1	336	192	207	33.9130
qqqqqqqqbb]ccc]	chr2:74692295-74692525(-)$1	230	163	178	21.9565

#DB
)((((((((((((((	chr14:104182026-104182365(+)$1	1	76	91	23.6956
)))))))))..((.(	chr19:18717334-18717554(-)$1	1	124	139	22.8260
))((((.((((((((	chr1:9188926-9189206(-)$1	1	45	60	22.2826
...))).))))))))	chr2:95787537-95787838(-)$1	1	87	102	23.1521
..)).))))))))))	chr14:102975940-102976186(-)$1	1	174	189	26.3043
.))))))))))))))	chr4:141677075-141677351(-)$1	1	259	274	30.8695
(.((..(((((((..	chr12:129308197-129308614(-)$1	1	181	196	30.1086
((((((((((((.((	chr3:52478836-52479184(-)$1	1	108	123	22.6086
((((....)))))((	chr1:117910027-117910286(+)$1	1	64	79	27.9347
((((((...(((((.	chr1:8086114-8086380(-)$1	1	4	19	23.8043
(((.(((((((((((	chr4:22517420-22517712(-)$1	1	25	40	30.8695
))))))(((((((((	chr1:2126030-2126294(-)$1	1	33	48	21.8478
.((((((((((((((	chr1:1167678-1167981(+)$1	1	1	16	22.7173
.....))))).))))	chr19:572473-572802(+)$1	1	109	124	29.6739
((.((((((..((((	chr13:39611725-39612011(-)$1	1	134	149	22.3913
....)))))))))))	chr4:166300354-166300601(+)$1	1	110	125	25.3260
((.((((((((...)	chr2:9563060-9563317(-)$1	1	75	90	22.7173
(((((((((...)))	chr2:96931998-96932328(+)$1	1	188	203	21.7391
))...((((((((((	chr17:75369316-75369618(+)$1	1	38	53	26.8478
(((((((((((....	chr7:5434050-5434317(-)$1	1	28	43	26.0869
(((.(((.((.((..	chr17:30264099-30264377(+)$1	1	248	263	27.7173
.(((..((.((.((.	chr1:154530937-154531239(-)$1	1	116	131	31.5217
((((((((((((..(	chr9:127962950-127963225(+)$1	1	145	160	23.6956
..(((((((((((.(	chr18:11981518-11981779(+)$1	1	172	187	23.5869
(((((((((.((.((	chr2:187454705-187454913(+)$1	1	102	117	22.2826
((((...)))))(((	chr8:61429424-61429794(+)$1	1	51	66	28.0434
(.((....))..)))	chr8:120220505-120220793(+)$1	1	117	132	30.4347
.)))))))(((((((	chr1:36789006-36789320(-)$1	1	183	198	26.7391
((((.(((((.((((	chr5:139028117-139028393(+)$1	1	143	158	22.0652
)))))..))))).))	chr12:118498820-118499060(-)$1	1	96	111	33.9130
((((.......)).(	chr20:33680317-33680572(-)$1	1	62	77	22.9347
(.......))))).(	chr15:41576144-41576395(+)$1	1	5	20	24.6739
((((((.((((((.(	chr16:52580816-52581137(-)$1	1	7	22	26.1956
))))))).).)))))	chr18:9614377-9614636(-)$1	1	123	138	25.7608
((.((.((....)).	chr5:133707105-133707347(+)$1	1	59	74	31.5217
((((((.((((((((	chr7:158380330-158380573(-)$1	1	111	126	23.0434
.((((((((((((((	chr16:67225976-67226292(+)$1	1	98	113	26.6304
((((((..(((((((	chr2:132249685-132249949(-)$1	1	25	40	22.9347
)))))((((......	chr7:140396431-140396748(+)$1	1	32	47	23.3695
(((((((.((((.((	chr3:33155453-33155706(+)$1	1	132	147	21.8478
).)))).))))))))	chr10:35104021-35104277(-)$1	1	102	117	22.7173
.)))))).))))).)	chr2:32582189-32582476(+)$1	1	167	182	28.1521
)))))))))))))))	chr19:662990-663279(-)$1	1	242	257	26.1956
((((.((....)).)	chr20:31331033-31331350(-)$1	1	110	125	33.9130
))))).)))))))))	chr13:98086498-98086834(+)$1	1	192	207	33.9130
........)).))).	chr2:74692295-74692525(-)$1	1	163	178	21.9565

#PSSM
g : 0.34	G : 0.32	c : 0.10	C : 0.08	A : 0.06	u : 0.04	U : 0.02	
g : 0.43	G : 0.36	A : 0.08	c : 0.06	U : 0.02	a : 0.02	
g : 0.52	G : 0.32	C : 0.10	A : 0.02	c : 0.02	
c : 0.47	C : 0.36	A : 0.06	a : 0.04	G : 0.02	g : 0.02	
g : 0.49	G : 0.41	c : 0.04	U : 0.02	A : 0.02	
g : 0.52	G : 0.45	c : 0.02	
c : 0.41	C : 0.39	g : 0.10	A : 0.04	G : 0.02	a : 0.02	
g : 0.47	G : 0.36	c : 0.04	U : 0.04	C : 0.04	u : 0.02	
g : 0.45	G : 0.36	C : 0.08	c : 0.04	a : 0.02	u : 0.02	
c : 0.45	C : 0.34	g : 0.06	G : 0.06	u : 0.02	U : 0.02	A : 0.02	
g : 0.52	G : 0.30	C : 0.08	U : 0.04	c : 0.02	A : 0.02	
g : 0.54	G : 0.36	C : 0.06	A : 0.02	
c : 0.49	C : 0.41	g : 0.04	A : 0.04	
g : 0.43	G : 0.43	c : 0.08	A : 0.02	C : 0.02	
g : 0.47	G : 0.43	c : 0.04	U : 0.02	C : 0.02	

#score	1189.5652173913036
#seq	46
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_transcript_m2_run1.nuc.txt

#NT
AAGAAA	chr1:47728391-47728648(-)$1	257	76	82	17.9999
AAGAAA	chr3:186502416-186502656(+)$1	240	73	79	17.9999
AAGAAA	chr11:121875028-121875257(+)$1	229	131	137	17.9999
AAGAAA	chr6:10894364-10894668(+)$1	304	184	190	17.9999
AAGAAA	chr3:186502197-186502446(+)$1	249	71	77	17.9999
AAGAAA	chr1:85724005-85724280(-)$1	275	28	34	17.9999
AAGAAA	chr17:33925285-33925568(+)$1	283	1	7	17.9999
AAGAAA	chr5:167922356-167922638(+)$1	282	167	173	17.9999
AAGAAA	chr2:173451044-173451287(+)$1	243	82	88	17.9999
AAGAAA	chr12:104326119-104326398(+)$1	279	235	241	17.9999
AAGAAA	chr18:690876-691138(-)$1	262	62	68	17.9999
AAGAAA	chr1:33244786-33245060(-)$1	274	54	60	17.9999
AAGAAA	chr21:33073116-33073380(-)$1	264	206	212	17.9999
AAGAAA	chr1:207940466-207940744(+)$1	278	178	184	17.9999
AAGAAA	chr9:100418297-100418548(+)$1	251	210	216	17.9999
AAGAAA	chr6:43746583-43746877(+)$1	294	46	52	17.9999
AAGAAA	chr3:42668647-42668910(+)$1	263	153	159	17.9999
AAGAAA	chr7:152357571-152357838(-)$1	267	5	11	17.9999
AAGAAA	chr10:71921415-71921682(-)$1	267	196	202	17.9999
AAGAAA	chr7:157018159-157018406(+)$1	247	24	30	17.9999
AAGAAA	chr1:207958949-207959215(+)$1	266	70	76	17.9999
AAGAAA	chr15:93552474-93552745(+)$1	271	170	176	17.9999
AAGAAA	chr8:86129440-86129687(-)$1	247	235	241	17.9999
AAGAAA	chr16:58580032-58580294(-)$1	262	21	27	17.9999
AAGAAA	chr3:156876461-156876725(-)$1	264	172	178	17.9999
AAGAAA	chr12:104337580-104337858(+)$1	278	243	249	17.9999

#otherMatches

#Struct PSSM
::::::	chr8:30977864-30978131(+)$1	267	206	212	17.9999
gg::ff	chr1:47728391-47728648(-)$1	257	76	82	17.9999
::::::	chr3:186502416-186502656(+)$1	240	73	79	17.9999
xxxxxx	chr11:121875028-121875257(+)$1	229	131	137	17.9999
]dddd3	chr6:10894364-10894668(+)$1	304	184	190	17.9999
[a!!gg	chr3:186502197-186502446(+)$1	249	71	77	17.9999
[bbmmm	chr1:85724005-85724280(-)$1	275	28	34	17.9999
::::::	chr17:33925285-33925568(+)$1	283	1	7	17.9999
gggggg	chr5:167922356-167922638(+)$1	282	167	173	17.9999
]ccc::	chr2:173451044-173451287(+)$1	243	82	88	17.9999
mccc::	chr12:104326119-104326398(+)$1	279	235	241	17.9999
=!!bb[	chr18:690876-691138(-)$1	262	62	68	17.9999
gggggg	chr1:33244786-33245060(-)$1	274	54	60	17.9999
ffff22	chr21:33073116-33073380(-)$1	264	206	212	17.9999
fqqqqq	chr1:207940466-207940744(+)$1	278	178	184	17.9999
HHHH::	chr9:100418297-100418548(+)$1	251	210	216	17.9999
^ccc]c	chr6:43746583-43746877(+)$1	294	46	52	17.9999
'eeeee	chr3:42668647-42668910(+)$1	263	153	159	17.9999
::::::	chr7:152357571-152357838(-)$1	267	5	11	17.9999
ggguuu	chr10:71921415-71921682(-)$1	267	196	202	17.9999
((((((	chr7:157018159-157018406(+)$1	247	24	30	17.9999
hhhhhh	chr1:207958949-207959215(+)$1	266	70	76	17.9999
ddddee	chr15:93552474-93552745(+)$1	271	170	176	17.9999
::::::	chr8:86129440-86129687(-)$1	247	235	241	17.9999
::::FF	chr16:58580032-58580294(-)$1	262	21	27	17.9999
>>>>>>	chr3:156876461-156876725(-)$1	264	172	178	17.9999
ff::::	chr12:104337580-104337858(+)$1	278	243	249	17.9999

#DB
......	chr8:30977864-30978131(+)$1	1	206	212	17.9999
))..((	chr1:47728391-47728648(-)$1	1	76	82	17.9999
......	chr3:186502416-186502656(+)$1	1	73	79	17.9999
......	chr11:121875028-121875257(+)$1	1	131	137	17.9999
.)))).	chr6:10894364-10894668(+)$1	1	184	190	17.9999
.(..((	chr3:186502197-186502446(+)$1	1	71	77	17.9999
.((...	chr1:85724005-85724280(-)$1	1	28	34	17.9999
......	chr17:33925285-33925568(+)$1	1	1	7	17.9999
))))))	chr5:167922356-167922638(+)$1	1	167	173	17.9999
.)))..	chr2:173451044-173451287(+)$1	1	82	88	17.9999
.)))..	chr12:104326119-104326398(+)$1	1	235	241	17.9999
(..((.	chr18:690876-691138(-)$1	1	62	68	17.9999
((((((	chr1:33244786-33245060(-)$1	1	54	60	17.9999
))))..	chr21:33073116-33073380(-)$1	1	206	212	17.9999
(.....	chr1:207940466-207940744(+)$1	1	178	184	17.9999
))))..	chr9:100418297-100418548(+)$1	1	210	216	17.9999
.))).)	chr6:43746583-43746877(+)$1	1	46	52	17.9999
.(((((	chr3:42668647-42668910(+)$1	1	153	159	17.9999
......	chr7:152357571-152357838(-)$1	1	5	11	17.9999
(((...	chr10:71921415-71921682(-)$1	1	196	202	17.9999
......	chr7:157018159-157018406(+)$1	1	24	30	17.9999
((((((	chr1:207958949-207959215(+)$1	1	70	76	17.9999
))))))	chr15:93552474-93552745(+)$1	1	170	176	17.9999
......	chr8:86129440-86129687(-)$1	1	235	241	17.9999
....((	chr16:58580032-58580294(-)$1	1	21	27	17.9999
......	chr3:156876461-156876725(-)$1	1	172	178	17.9999
))....	chr12:104337580-104337858(+)$1	1	243	249	17.9999

#PSSM
A : 0.96	a : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	
A : 0.96	a : 0.03	
A : 0.96	a : 0.03	

#score	485.9999999999999
#seq	27
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_UTR_m3_run1.nuc.txt

#NT
CUG	chr6:26285290-26285510(-)$1	220	53	56	9.0000
CUG	chr6:27101136-27101368(+)$1	232	2	5	9.0000
CUG	chr6:26216372-26216576(-)$1	204	5	8	9.0000
CUG	chr6:26234340-26234569(-)$1	229	76	79	9.0000
CUG	chr6:26033221-26033504(-)$1	283	53	56	9.0000
CUG	chr6:26216376-26216595(-)$1	219	24	27	9.0000
CUG	chr1:228644966-228645204(-)$1	238	10	13	9.0000
CUG	chr6:27101168-27101387(+)$1	219	6	9	9.0000
CUG	chr1:149783334-149783576(-)$1	242	1	4	9.0000
CUG	chr6:26217549-26217763(+)$1	214	1	4	9.0000
CUG	chr6:27833422-27833675(+)$1	253	1	4	9.0000
CUG	chr6:26205025-26205291(+)$1	266	21	24	9.0000
CUG	chr6:26234369-26234611(-)$1	242	6	9	9.0000
CUG	chr11:118965970-118966233(-)$1	263	18	21	9.0000
CUG	chr6:26055872-26056103(-)$1	231	0	3	9.0000
CUG	chr6:26285248-26285477(-)$1	229	20	23	9.0000
CUG	chr6:26055868-26056072(-)$1	204	143	146	9.0000
CUG	chr6:27778156-27778366(+)$1	210	22	25	9.0000
CUG	chr11:118965522-118965771(-)$1	249	12	15	9.0000
CUG	chr6:27860421-27860671(-)$1	250	32	35	9.0000
CUG	chr6:27806772-27806986(+)$1	214	132	135	9.0000
CUG	chr1:22054283-22054610(-)$1	327	23	26	9.0000
CUG	chr6:26252152-26252401(+)$1	249	26	29	9.0000
cug	chr12:7052906-7053139(+)$1	233	111	114	9.0000
CUG	chr6:27114050-27114338(-)$1	288	1	4	9.0000
CUG	chr6:27834471-27834760(-)$1	289	21	24	9.0000
CUG	chr6:27861562-27861766(+)$1	204	69	72	9.0000
CUG	chr6:26204764-26205046(+)$1	282	112	115	9.0000
CUG	chr6:27101187-27101414(+)$1	227	11	14	9.0000
CUG	chr6:26157167-26157441(+)$1	274	128	131	9.0000
CUG	chr11:118965445-118965677(-)$1	232	92	95	9.0000
CUG	chr6:26055910-26056117(-)$1	207	14	17	9.0000
CUG	chr6:26124779-26125000(+)$1	221	29	32	9.0000
CUG	chr6:26123595-26123800(-)$1	205	123	126	9.0000
CUG	chr1:149858807-149859059(+)$1	252	5	8	9.0000
CUG	chr6:27806744-27806965(+)$1	221	1	4	9.0000
CUG	chr6:27806730-27806944(+)$1	214	9	12	9.0000
CUG	chr6:27860378-27860621(-)$1	243	18	21	9.0000
CUG	chr6:25727464-25727672(+)$1	208	6	9	9.0000
CUG	chr6:26285310-26285531(-)$1	221	12	15	9.0000
CUG	chr6:27775881-27776120(+)$1	239	110	113	9.0000
CUG	chr6:27115139-27115405(+)$1	266	23	26	9.0000
CUG	chr11:118965477-118965698(-)$1	221	113	116	9.0000
CUG	chr1:228645004-228645246(-)$1	242	16	19	9.0000
CUG	chr6:26027025-26027257(-)$1	232	18	21	9.0000
CUG	chr6:26217494-26217701(+)$1	207	32	35	9.0000
CUG	chr6:25727431-25727664(+)$1	233	14	17	9.0000
CUG	chr6:27806700-27806930(+)$1	230	39	42	9.0000
CUG	chr1:228646099-228646358(+)$1	259	31	34	9.0000
CUG	chr6:27100038-27100299(-)$1	261	10	13	9.0000
CUG	chr6:26158665-26158934(+)$1	269	32	35	9.0000
CUG	chr1:149783661-149783992(-)$1	331	139	142	9.0000
CUG	chr6:27776274-27776518(+)$1	244	4	7	9.0000
CUG	chr6:26200104-26200315(+)$1	211	0	3	9.0000
CUG	chr6:27806765-27806972(+)$1	207	139	142	9.0000
CUG	chr6:27857994-27858239(-)$1	245	84	87	9.0000
CUG	chr9:130575934-130576192(+)$1	258	41	44	9.0000
CUG	chr6:27858058-27858280(-)$1	222	10	13	9.0000
CUG	chr6:27107261-27107520(+)$1	259	12	15	9.0000
CUG	chr6:26022151-26022377(+)$1	226	2	5	9.0000
CUG	chr6:27858039-27858258(-)$1	219	17	20	9.0000
CUG	chr6:26124312-26124580(+)$1	268	119	122	9.0000
CUG	chr6:27107322-27107555(+)$1	233	156	159	9.0000
CUG	chr6:26217459-26217694(+)$1	235	67	70	9.0000
CUG	chr6:26198977-26199246(-)$1	269	24	27	9.0000
CUG	chr6:27114803-27115051(+)$1	248	62	65	9.0000
CUG	chr6:26217501-26217742(+)$1	241	25	28	9.0000
CUG	chr6:26217542-26217749(+)$1	207	8	11	9.0000
CUG	chr6:26045961-26046195(+)$1	234	4	7	9.0000
CUG	chr6:26188839-26189089(-)$1	250	93	96	9.0000
CUG	chr6:26205091-26205348(+)$1	257	51	54	9.0000
CUG	chr6:26188889-26189109(-)$1	220	13	16	9.0000
CUG	chr6:27792098-27792318(+)$1	220	169	172	9.0000
CUG	chr16:11931363-11931618(-)$1	255	8	11	9.0000
CUG	chr6:27805558-27805834(-)$1	276	5	8	9.0000
CUG	chr6:25726191-25726442(-)$1	251	11	14	9.0000
CUG	chr1:149858918-149859185(-)$1	267	59	62	9.0000
CUG	chr6:26031720-26031964(-)$1	244	164	167	9.0000
CUG	chr1:149813687-149813993(-)$1	306	7	10	9.0000
CUG	chr6:26197341-26197588(-)$1	247	12	15	9.0000
CUG	chr6:26104348-26104600(+)$1	252	68	71	9.0000
CUG	chr6:27798852-27799106(-)$1	254	164	167	9.0000
CUG	chr6:27778166-27778412(+)$1	246	12	15	9.0000
CUG	chr6:26285277-26285486(-)$1	209	29	32	9.0000
CUG	chr6:26124801-26125016(+)$1	215	7	10	9.0000
CUG	chr6:26200092-26200300(+)$1	208	0	3	9.0000
CUG	chr6:26043355-26043591(-)$1	236	6	9	9.0000
CUG	chr6:27107355-27107598(+)$1	243	123	126	9.0000
CUG	chr6:26285601-26285829(-)$1	228	106	109	9.0000
CUG	chr6:26216342-26216572(-)$1	230	1	4	9.0000
CUG	chr11:118965498-118965722(-)$1	224	137	140	9.0000

#otherMatches

#Struct PSSM
[bb	chr6:27792118-27792355(+)$1	237	149	152	9.0000
iii	chr6:26285290-26285510(-)$1	220	53	56	9.0000
:bb	chr6:27101136-27101368(+)$1	232	2	5	9.0000
ddd	chr6:26216372-26216576(-)$1	204	5	8	9.0000
>>c	chr6:26234340-26234569(-)$1	229	76	79	9.0000
b]g	chr6:26033221-26033504(-)$1	283	53	56	9.0000
ddd	chr6:26216376-26216595(-)$1	219	24	27	9.0000
bbd	chr1:228644966-228645204(-)$1	238	10	13	9.0000
eee	chr6:27101168-27101387(+)$1	219	6	9	9.0000
BBL	chr1:149783334-149783576(-)$1	242	1	4	9.0000
DDD	chr6:26217549-26217763(+)$1	214	1	4	9.0000
:ff	chr6:27833422-27833675(+)$1	253	1	4	9.0000
GGN	chr6:26205025-26205291(+)$1	266	21	24	9.0000
GGG	chr6:26234369-26234611(-)$1	242	6	9	9.0000
hh:	chr11:118965970-118966233(-)$1	263	18	21	9.0000
BB{	chr6:26055872-26056103(-)$1	231	0	3	9.0000
iii	chr6:26285248-26285477(-)$1	229	20	23	9.0000
eeb	chr6:26055868-26056072(-)$1	204	143	146	9.0000
[bb	chr6:27778156-27778366(+)$1	210	22	25	9.0000
[ee	chr11:118965522-118965771(-)$1	249	12	15	9.0000
dd]	chr6:27860421-27860671(-)$1	250	32	35	9.0000
GGG	chr6:27806772-27806986(+)$1	214	132	135	9.0000
hhh	chr1:22054283-22054610(-)$1	327	23	26	9.0000
mmb	chr6:26252152-26252401(+)$1	249	26	29	9.0000
===	chr12:7052906-7053139(+)$1	233	111	114	9.0000
::e	chr6:27114050-27114338(-)$1	288	1	4	9.0000
EEE	chr6:27834471-27834760(-)$1	289	21	24	9.0000
eee	chr6:27861562-27861766(+)$1	204	69	72	9.0000
fff	chr6:26204764-26205046(+)$1	282	112	115	9.0000
b]c	chr6:27101187-27101414(+)$1	227	11	14	9.0000
HHH	chr6:26157167-26157441(+)$1	274	128	131	9.0000
eee	chr11:118965445-118965677(-)$1	232	92	95	9.0000
KKB	chr6:26055910-26056117(-)$1	207	14	17	9.0000
een	chr6:26124779-26125000(+)$1	221	29	32	9.0000
ssd	chr6:26123595-26123800(-)$1	205	123	126	9.0000
cc[	chr1:149858807-149859059(+)$1	252	5	8	9.0000
:FF	chr6:27806744-27806965(+)$1	221	1	4	9.0000
[dd	chr6:27806730-27806944(+)$1	214	9	12	9.0000
eee	chr6:27860378-27860621(-)$1	243	18	21	9.0000
ddd	chr6:25727464-25727672(+)$1	208	6	9	9.0000
lle	chr6:26285310-26285531(-)$1	221	12	15	9.0000
eeF	chr6:27775881-27776120(+)$1	239	110	113	9.0000
NEE	chr6:27115139-27115405(+)$1	266	23	26	9.0000
cc:	chr11:118965477-118965698(-)$1	221	113	116	9.0000
dd]	chr1:228645004-228645246(-)$1	242	16	19	9.0000
ggg	chr6:26027025-26027257(-)$1	232	18	21	9.0000
fff	chr6:26217494-26217701(+)$1	207	32	35	9.0000
ddd	chr6:25727431-25727664(+)$1	233	14	17	9.0000
!dd	chr6:27806700-27806930(+)$1	230	39	42	9.0000
g[b	chr1:228646099-228646358(+)$1	259	31	34	9.0000
c:e	chr6:27100038-27100299(-)$1	261	10	13	9.0000
cc[	chr6:26158665-26158934(+)$1	269	32	35	9.0000
EEE	chr1:149783661-149783992(-)$1	331	139	142	9.0000
:II	chr6:27776274-27776518(+)$1	244	4	7	9.0000
::c	chr6:26200104-26200315(+)$1	211	0	3	9.0000
GGG	chr6:27806765-27806972(+)$1	207	139	142	9.0000
GGG	chr6:27857994-27858239(-)$1	245	84	87	9.0000
ddd	chr9:130575934-130576192(+)$1	258	41	44	9.0000
lll	chr6:27858058-27858280(-)$1	222	10	13	9.0000
fff	chr6:27107261-27107520(+)$1	259	12	15	9.0000
!!h	chr6:26022151-26022377(+)$1	226	2	5	9.0000
KBB	chr6:27858039-27858258(-)$1	219	17	20	9.0000
gg6	chr6:26124312-26124580(+)$1	268	119	122	9.0000
HHH	chr6:27107322-27107555(+)$1	233	156	159	9.0000
fff	chr6:26217459-26217694(+)$1	235	67	70	9.0000
::f	chr6:26198977-26199246(-)$1	269	24	27	9.0000
llf	chr6:27114803-27115051(+)$1	248	62	65	9.0000
ATT	chr6:26217501-26217742(+)$1	241	25	28	9.0000
bbn	chr6:26217542-26217749(+)$1	207	8	11	9.0000
EEE	chr6:26045961-26046195(+)$1	234	4	7	9.0000
2ee	chr6:26188839-26189089(-)$1	250	93	96	9.0000
HHH	chr6:26205091-26205348(+)$1	257	51	54	9.0000
eee	chr6:26188889-26189109(-)$1	220	13	16	9.0000
mmb	chr6:27792098-27792318(+)$1	220	169	172	9.0000
FFF	chr16:11931363-11931618(-)$1	255	8	11	9.0000
III	chr6:27805558-27805834(-)$1	276	5	8	9.0000
fff	chr6:25726191-25726442(-)$1	251	11	14	9.0000
iii	chr1:149858918-149859185(-)$1	267	59	62	9.0000
ddd	chr6:26031720-26031964(-)$1	244	164	167	9.0000
CCC	chr1:149813687-149813993(-)$1	306	7	10	9.0000
f!!	chr6:26197341-26197588(-)$1	247	12	15	9.0000
ccc	chr6:26104348-26104600(+)$1	252	68	71	9.0000
f!!	chr6:27798852-27799106(-)$1	254	164	167	9.0000
[bb	chr6:27778166-27778412(+)$1	246	12	15	9.0000
iii	chr6:26285277-26285486(-)$1	209	29	32	9.0000
JJJ	chr6:26124801-26125016(+)$1	215	7	10	9.0000
:::	chr6:26200092-26200300(+)$1	208	0	3	9.0000
##f	chr6:26043355-26043591(-)$1	236	6	9	9.0000
HHH	chr6:27107355-27107598(+)$1	243	123	126	9.0000
b!!	chr6:26285601-26285829(-)$1	228	106	109	9.0000
:DD	chr6:26216342-26216572(-)$1	230	1	4	9.0000
cc:	chr11:118965498-118965722(-)$1	224	137	140	9.0000

#DB
.((	chr6:27792118-27792355(+)$1	1	149	152	9.0000
(((	chr6:26285290-26285510(-)$1	1	53	56	9.0000
.((	chr6:27101136-27101368(+)$1	1	2	5	9.0000
(((	chr6:26216372-26216576(-)$1	1	5	8	9.0000
..)	chr6:26234340-26234569(-)$1	1	76	79	9.0000
).)	chr6:26033221-26033504(-)$1	1	53	56	9.0000
(((	chr6:26216376-26216595(-)$1	1	24	27	9.0000
(((	chr1:228644966-228645204(-)$1	1	10	13	9.0000
(((	chr6:27101168-27101387(+)$1	1	6	9	9.0000
((.	chr1:149783334-149783576(-)$1	1	1	4	9.0000
(((	chr6:26217549-26217763(+)$1	1	1	4	9.0000
.((	chr6:27833422-27833675(+)$1	1	1	4	9.0000
((.	chr6:26205025-26205291(+)$1	1	21	24	9.0000
(((	chr6:26234369-26234611(-)$1	1	6	9	9.0000
)).	chr11:118965970-118966233(-)$1	1	18	21	9.0000
((.	chr6:26055872-26056103(-)$1	1	0	3	9.0000
(((	chr6:26285248-26285477(-)$1	1	20	23	9.0000
)))	chr6:26055868-26056072(-)$1	1	143	146	9.0000
.((	chr6:27778156-27778366(+)$1	1	22	25	9.0000
.((	chr11:118965522-118965771(-)$1	1	12	15	9.0000
)).	chr6:27860421-27860671(-)$1	1	32	35	9.0000
)))	chr6:27806772-27806986(+)$1	1	132	135	9.0000
)))	chr1:22054283-22054610(-)$1	1	23	26	9.0000
..)	chr6:26252152-26252401(+)$1	1	26	29	9.0000
(((	chr12:7052906-7053139(+)$1	1	111	114	9.0000
..(	chr6:27114050-27114338(-)$1	1	1	4	9.0000
(((	chr6:27834471-27834760(-)$1	1	21	24	9.0000
(((	chr6:27861562-27861766(+)$1	1	69	72	9.0000
)))	chr6:26204764-26205046(+)$1	1	112	115	9.0000
).)	chr6:27101187-27101414(+)$1	1	11	14	9.0000
(((	chr6:26157167-26157441(+)$1	1	128	131	9.0000
(((	chr11:118965445-118965677(-)$1	1	92	95	9.0000
..(	chr6:26055910-26056117(-)$1	1	14	17	9.0000
((.	chr6:26124779-26125000(+)$1	1	29	32	9.0000
..)	chr6:26123595-26123800(-)$1	1	123	126	9.0000
((.	chr1:149858807-149859059(+)$1	1	5	8	9.0000
.((	chr6:27806744-27806965(+)$1	1	1	4	9.0000
.((	chr6:27806730-27806944(+)$1	1	9	12	9.0000
)))	chr6:27860378-27860621(-)$1	1	18	21	9.0000
(((	chr6:25727464-25727672(+)$1	1	6	9	9.0000
..)	chr6:26285310-26285531(-)$1	1	12	15	9.0000
)))	chr6:27775881-27776120(+)$1	1	110	113	9.0000
.((	chr6:27115139-27115405(+)$1	1	23	26	9.0000
)).	chr11:118965477-118965698(-)$1	1	113	116	9.0000
)).	chr1:228645004-228645246(-)$1	1	16	19	9.0000
(((	chr6:26027025-26027257(-)$1	1	18	21	9.0000
)))	chr6:26217494-26217701(+)$1	1	32	35	9.0000
)))	chr6:25727431-25727664(+)$1	1	14	17	9.0000
.((	chr6:27806700-27806930(+)$1	1	39	42	9.0000
(.(	chr1:228646099-228646358(+)$1	1	31	34	9.0000
).(	chr6:27100038-27100299(-)$1	1	10	13	9.0000
((.	chr6:26158665-26158934(+)$1	1	32	35	9.0000
)))	chr1:149783661-149783992(-)$1	1	139	142	9.0000
.((	chr6:27776274-27776518(+)$1	1	4	7	9.0000
..(	chr6:26200104-26200315(+)$1	1	0	3	9.0000
)))	chr6:27806765-27806972(+)$1	1	139	142	9.0000
(((	chr6:27857994-27858239(-)$1	1	84	87	9.0000
(((	chr9:130575934-130576192(+)$1	1	41	44	9.0000
...	chr6:27858058-27858280(-)$1	1	10	13	9.0000
(((	chr6:27107261-27107520(+)$1	1	12	15	9.0000
..(	chr6:26022151-26022377(+)$1	1	2	5	9.0000
.((	chr6:27858039-27858258(-)$1	1	17	20	9.0000
)).	chr6:26124312-26124580(+)$1	1	119	122	9.0000
)))	chr6:27107322-27107555(+)$1	1	156	159	9.0000
)))	chr6:26217459-26217694(+)$1	1	67	70	9.0000
..(	chr6:26198977-26199246(-)$1	1	24	27	9.0000
..)	chr6:27114803-27115051(+)$1	1	62	65	9.0000
(..	chr6:26217501-26217742(+)$1	1	25	28	9.0000
((.	chr6:26217542-26217749(+)$1	1	8	11	9.0000
(((	chr6:26045961-26046195(+)$1	1	4	7	9.0000
.))	chr6:26188839-26189089(-)$1	1	93	96	9.0000
(((	chr6:26205091-26205348(+)$1	1	51	54	9.0000
(((	chr6:26188889-26189109(-)$1	1	13	16	9.0000
..)	chr6:27792098-27792318(+)$1	1	169	172	9.0000
(((	chr16:11931363-11931618(-)$1	1	8	11	9.0000
(((	chr6:27805558-27805834(-)$1	1	5	8	9.0000
(((	chr6:25726191-25726442(-)$1	1	11	14	9.0000
)))	chr1:149858918-149859185(-)$1	1	59	62	9.0000
(((	chr6:26031720-26031964(-)$1	1	164	167	9.0000
(((	chr1:149813687-149813993(-)$1	1	7	10	9.0000
(..	chr6:26197341-26197588(-)$1	1	12	15	9.0000
(((	chr6:26104348-26104600(+)$1	1	68	71	9.0000
(..	chr6:27798852-27799106(-)$1	1	164	167	9.0000
.((	chr6:27778166-27778412(+)$1	1	12	15	9.0000
(((	chr6:26285277-26285486(-)$1	1	29	32	9.0000
(((	chr6:26124801-26125016(+)$1	1	7	10	9.0000
...	chr6:26200092-26200300(+)$1	1	0	3	9.0000
..(	chr6:26043355-26043591(-)$1	1	6	9	9.0000
)))	chr6:27107355-27107598(+)$1	1	123	126	9.0000
(..	chr6:26285601-26285829(-)$1	1	106	109	9.0000
.((	chr6:26216342-26216572(-)$1	1	1	4	9.0000
)).	chr11:118965498-118965722(-)$1	1	137	140	9.0000

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	828.0000000000007
#seq	92
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_CDS_m1_run2.nuc.txt

#NT
CCUG	chr2:88423983-88424206(-)$1	223	17	21	12.0000
CCUG	chr17:47007698-47007985(-)$1	287	16	20	12.0000
CCUG	chr19:10370376-10370682(+)$1	306	37	41	12.0000
CCUG	chr2:131102844-131103101(+)$1	257	96	100	12.0000
CCUG	chr12:50513761-50514076(+)$1	315	257	261	12.0000
CCUG	chr17:41152015-41152220(+)$1	205	141	145	12.0000
CCUG	chr1:110946526-110946758(-)$1	232	110	114	12.0000
CCUG	chr6:24701654-24701998(+)$1	344	42	46	12.0000
CCUG	chr8:144662181-144662431(-)$1	250	2	6	12.0000
CCUG	chr15:79227932-79228166(-)$1	234	210	214	12.0000
CCUG	chr7:150773327-150773629(+)$1	302	118	122	12.0000
CCUG	chr12:49434031-49434338(-)$1	307	19	23	12.0000
CCUG	chr16:88709671-88709893(-)$1	222	145	149	12.0000
CCUG	chr1:173456821-173457098(+)$1	277	85	89	12.0000
CCUG	chr15:44085994-44086211(+)$1	217	12	16	12.0000
CCUG	chr1:161192668-161192889(-)$1	221	92	96	12.0000
CCUG	chr19:55998612-55998873(+)$1	261	131	135	12.0000
CCUG	chr12:49434203-49434444(-)$1	241	2	6	12.0000
CCUG	chr1:156707042-156707308(-)$1	266	33	37	12.0000
CCUG	chr22:38355251-38355473(+)$1	222	45	49	12.0000
CCUG	chr19:17631782-17632038(+)$1	256	11	15	12.0000
CCUG	chr1:153634709-153634988(-)$1	279	169	173	12.0000
CCUG	chr15:90808977-90809253(+)$1	276	215	219	12.0000
CCUG	chr14:105219437-105219757(+)$1	320	260	264	12.0000
CCUG	chr19:1105387-1105607(+)$1	220	52	56	12.0000
CCUG	chr17:1680523-1680747(+)$1	224	94	98	12.0000
CCUG	chr1:145508857-145509152(+)$1	295	289	293	12.0000
CCUG	chr9:35099903-35100156(-)$1	253	172	176	12.0000
CCUG	chr19:59061731-59061977(+)$1	246	41	45	12.0000
CCUG	chr19:8367300-8367551(-)$1	251	78	82	12.0000
CCUG	chr15:77345021-77345277(-)$1	256	128	132	12.0000
CCUG	chr19:38873887-38874203(+)$1	316	16	20	12.0000
CCUG	chr6:33258365-33258635(+)$1	270	22	26	12.0000
CCUG	chr12:56553762-56554013(+)$1	251	209	213	12.0000
CCUG	chr19:36128345-36128654(+)$1	309	101	105	12.0000
CCUG	chr17:7306270-7306543(-)$1	273	108	112	12.0000
CCUG	chr5:149826365-149826594(-)$1	229	49	53	12.0000
CCUG	chr11:6703347-6703597(-)$1	250	116	120	12.0000
CCUG	chr7:75615650-75615925(+)$1	275	130	134	12.0000
CCUG	chr16:56643074-56643293(+)$1	219	85	89	12.0000
CCUG	chr14:23389982-23390266(-)$1	284	155	159	12.0000
CCUG	chr6:31625759-31625981(+)$1	222	36	40	12.0000
CCUG	chr1:153604083-153604351(+)$1	268	6	10	12.0000
CCUG	chr1:161192660-161192868(-)$1	208	71	75	12.0000
CCUG	chr19:45412063-45412355(+)$1	292	5	9	12.0000
CCUG	chr17:79674141-79674467(+)$1	326	32	36	12.0000
CCUG	chr19:40331005-40331253(-)$1	248	30	34	12.0000
CCUG	chr5:132202502-132202772(+)$1	270	35	39	12.0000
CCUG	chr4:155506636-155506852(-)$1	216	153	157	12.0000
CCUG	chr4:74319449-74319661(+)$1	212	110	114	12.0000
CCUG	chr14:24687285-24687522(-)$1	237	78	82	12.0000
CCUG	chrX:47001621-47001875(-)$1	254	16	20	12.0000
CCUG	chr19:2271300-2271528(+)$1	228	26	30	12.0000
CCUG	chr17:79857751-79858014(+)$1	263	4	8	12.0000
CCUG	chr17:7417313-7417573(+)$1	260	102	106	12.0000
CCUG	chr20:35240400-35240660(+)$1	260	168	172	12.0000
CCUG	chr12:58111977-58112250(+)$1	273	145	149	12.0000
CCUG	chr14:74951017-74951306(-)$1	289	56	60	12.0000
CCUG	chr3:133495959-133496163(+)$1	204	100	104	12.0000
CCUG	chr16:56642806-56643055(+)$1	249	103	107	12.0000
CCUG	chr9:140446424-140446649(+)$1	225	117	121	12.0000
CCUG	chr6:34385176-34385424(-)$1	248	25	29	12.0000
CCUG	chr5:135391381-135391606(+)$1	225	46	50	12.0000
CCUG	chr19:44012050-44012301(-)$1	251	16	20	12.0000
CCUG	chr10:135165796-135166110(+)$1	314	24	28	12.0000
CCUG	chr9:140137831-140138140(+)$1	309	20	24	12.0000
CCUG	chr2:25013217-25013489(-)$1	272	77	81	12.0000
CCUG	chrX:130407766-130408007(-)$1	241	175	179	12.0000
CCUG	chr1:156563126-156563390(+)$1	264	58	62	12.0000
CCUG	chr6:33243854-33244061(+)$1	207	136	140	12.0000
CCUG	chr16:4559582-4559933(+)$1	351	51	55	12.0000
CCUG	chr3:133497347-133497554(+)$1	207	86	90	12.0000
CCUG	chr2:54197743-54198040(-)$1	297	110	114	12.0000
CCUG	chr11:1774642-1774868(-)$1	226	48	52	12.0000
CCUG	chr20:33867360-33867642(-)$1	282	166	170	12.0000
CCUG	chr1:173872925-173873192(-)$1	267	90	94	12.0000
CCUG	chr19:40325082-40325303(-)$1	221	62	66	12.0000
CCUG	chr19:12779857-12780124(-)$1	267	11	15	12.0000
CCUG	chr8:145637724-145638040(-)$1	316	24	28	12.0000
CCUG	chr15:64448189-64448444(-)$1	255	16	20	12.0000
CCUG	chr3:197682540-197682756(+)$1	216	73	77	12.0000
CCUG	chr3:52027642-52027869(-)$1	227	158	162	12.0000
CCUG	chr11:61025979-61026250(-)$1	271	47	51	12.0000
CCUG	chr16:56660741-56660973(+)$1	232	59	63	12.0000
CCUG	chr18:77710778-77711031(-)$1	253	119	123	12.0000
CCUG	chr19:18707358-18707613(-)$1	255	41	45	12.0000
CCUG	chr20:62373829-62374066(+)$1	237	3	7	12.0000
CCUG	chr1:19949955-19950179(+)$1	224	171	175	12.0000

#otherMatches

#Struct PSSM
qqqq	chr19:12845238-12845496(-)$1	258	13	17	12.0000
:eee	chr2:88423983-88424206(-)$1	223	17	21	12.0000
dddd	chr17:47007698-47007985(-)$1	287	16	20	12.0000
ffff	chr19:10370376-10370682(+)$1	306	37	41	12.0000
gggg	chr2:131102844-131103101(+)$1	257	96	100	12.0000
dddd	chr12:50513761-50514076(+)$1	315	257	261	12.0000
:ddd	chr17:41152015-41152220(+)$1	205	141	145	12.0000
LLFF	chr1:110946526-110946758(-)$1	232	110	114	12.0000
dddd	chr6:24701654-24701998(+)$1	344	42	46	12.0000
ddd[	chr8:144662181-144662431(-)$1	250	2	6	12.0000
DDDF	chr15:79227932-79228166(-)$1	234	210	214	12.0000
ddd:	chr7:150773327-150773629(+)$1	302	118	122	12.0000
FFFF	chr12:49434031-49434338(-)$1	307	19	23	12.0000
addd	chr16:88709671-88709893(-)$1	222	145	149	12.0000
qqbb	chr1:173456821-173457098(+)$1	277	85	89	12.0000
c!!e	chr15:44085994-44086211(+)$1	217	12	16	12.0000
ee]g	chr1:161192668-161192889(-)$1	221	92	96	12.0000
iiii	chr19:55998612-55998873(+)$1	261	131	135	12.0000
::cc	chr12:49434203-49434444(-)$1	241	2	6	12.0000
ubb]	chr1:156707042-156707308(-)$1	266	33	37	12.0000
]eee	chr22:38355251-38355473(+)$1	222	45	49	12.0000
LLLJ	chr19:17631782-17632038(+)$1	256	11	15	12.0000
dddo	chr1:153634709-153634988(-)$1	279	169	173	12.0000
]a:h	chr15:90808977-90809253(+)$1	276	215	219	12.0000
iiii	chr14:105219437-105219757(+)$1	320	260	264	12.0000
tttt	chr19:1105387-1105607(+)$1	220	52	56	12.0000
qqqd	chr17:1680523-1680747(+)$1	224	94	98	12.0000
CCC:	chr1:145508857-145509152(+)$1	295	289	293	12.0000
occc	chr9:35099903-35100156(-)$1	253	172	176	12.0000
]eee	chr19:59061731-59061977(+)$1	246	41	45	12.0000
pddd	chr19:8367300-8367551(-)$1	251	78	82	12.0000
::ee	chr15:77345021-77345277(-)$1	256	128	132	12.0000
ccc]	chr19:38873887-38874203(+)$1	316	16	20	12.0000
::dd	chr6:33258365-33258635(+)$1	270	22	26	12.0000
???E	chr12:56553762-56554013(+)$1	251	209	213	12.0000
LLBB	chr19:36128345-36128654(+)$1	309	101	105	12.0000
dddn	chr17:7306270-7306543(-)$1	273	108	112	12.0000
>>>f	chr5:149826365-149826594(-)$1	229	49	53	12.0000
ffff	chr11:6703347-6703597(-)$1	250	116	120	12.0000
cccc	chr7:75615650-75615925(+)$1	275	130	134	12.0000
CCCe	chr16:56643074-56643293(+)$1	219	85	89	12.0000
ccc!	chr14:23389982-23390266(-)$1	284	155	159	12.0000
GGGd	chr6:31625759-31625981(+)$1	222	36	40	12.0000
LFFF	chr1:153604083-153604351(+)$1	268	6	10	12.0000
b]hh	chr1:161192660-161192868(-)$1	208	71	75	12.0000
:DDD	chr19:45412063-45412355(+)$1	292	5	9	12.0000
deee	chr17:79674141-79674467(+)$1	326	32	36	12.0000
=bbd	chr19:40331005-40331253(-)$1	248	30	34	12.0000
ff]d	chr5:132202502-132202772(+)$1	270	35	39	12.0000
cccn	chr4:155506636-155506852(-)$1	216	153	157	12.0000
eee!	chr4:74319449-74319661(+)$1	212	110	114	12.0000
lccc	chr14:24687285-24687522(-)$1	237	78	82	12.0000
EEEb	chrX:47001621-47001875(-)$1	254	16	20	12.0000
eeel	chr19:2271300-2271528(+)$1	228	26	30	12.0000
EKKF	chr17:79857751-79858014(+)$1	263	4	8	12.0000
CCC{	chr17:7417313-7417573(+)$1	260	102	106	12.0000
e22b	chr20:35240400-35240660(+)$1	260	168	172	12.0000
iiii	chr12:58111977-58112250(+)$1	273	145	149	12.0000
3ccc	chr14:74951017-74951306(-)$1	289	56	60	12.0000
dddd	chr3:133495959-133496163(+)$1	204	100	104	12.0000
mmma	chr16:56642806-56643055(+)$1	249	103	107	12.0000
oooo	chr9:140446424-140446649(+)$1	225	117	121	12.0000
ggg:	chr6:34385176-34385424(-)$1	248	25	29	12.0000
dd[e	chr5:135391381-135391606(+)$1	225	46	50	12.0000
e::e	chr19:44012050-44012301(-)$1	251	16	20	12.0000
IIII	chr10:135165796-135166110(+)$1	314	24	28	12.0000
f!!b	chr9:140137831-140138140(+)$1	309	20	24	12.0000
bb]b	chr2:25013217-25013489(-)$1	272	77	81	12.0000
mmdd	chrX:130407766-130408007(-)$1	241	175	179	12.0000
CCC:	chr1:156563126-156563390(+)$1	264	58	62	12.0000
qqff	chr6:33243854-33244061(+)$1	207	136	140	12.0000
dddd	chr16:4559582-4559933(+)$1	351	51	55	12.0000
d[dd	chr3:133497347-133497554(+)$1	207	86	90	12.0000
eee]	chr2:54197743-54198040(-)$1	297	110	114	12.0000
ABBe	chr11:1774642-1774868(-)$1	226	48	52	12.0000
c::f	chr20:33867360-33867642(-)$1	282	166	170	12.0000
444d	chr1:173872925-173873192(-)$1	267	90	94	12.0000
999f	chr19:40325082-40325303(-)$1	221	62	66	12.0000
hhhh	chr19:12779857-12780124(-)$1	267	11	15	12.0000
$$$c	chr8:145637724-145638040(-)$1	316	24	28	12.0000
:bb[	chr15:64448189-64448444(-)$1	255	16	20	12.0000
0hhh	chr3:197682540-197682756(+)$1	216	73	77	12.0000
ee""	chr3:52027642-52027869(-)$1	227	158	162	12.0000
HHHH	chr11:61025979-61026250(-)$1	271	47	51	12.0000
pppb	chr16:56660741-56660973(+)$1	232	59	63	12.0000
eeoo	chr18:77710778-77711031(-)$1	253	119	123	12.0000
CKKB	chr19:18707358-18707613(-)$1	255	41	45	12.0000
BKKD	chr20:62373829-62374066(+)$1	237	3	7	12.0000
]eee	chr1:19949955-19950179(+)$1	224	171	175	12.0000

#DB
....	chr19:12845238-12845496(-)$1	1	13	17	12.0000
.(((	chr2:88423983-88424206(-)$1	1	17	21	12.0000
))))	chr17:47007698-47007985(-)$1	1	16	20	12.0000
))))	chr19:10370376-10370682(+)$1	1	37	41	12.0000
((((	chr2:131102844-131103101(+)$1	1	96	100	12.0000
))))	chr12:50513761-50514076(+)$1	1	257	261	12.0000
.(((	chr17:41152015-41152220(+)$1	1	141	145	12.0000
..((	chr1:110946526-110946758(-)$1	1	110	114	12.0000
((((	chr6:24701654-24701998(+)$1	1	42	46	12.0000
(((.	chr8:144662181-144662431(-)$1	1	2	6	12.0000
))))	chr15:79227932-79228166(-)$1	1	210	214	12.0000
))).	chr7:150773327-150773629(+)$1	1	118	122	12.0000
((((	chr12:49434031-49434338(-)$1	1	19	23	12.0000
((((	chr16:88709671-88709893(-)$1	1	145	149	12.0000
..))	chr1:173456821-173457098(+)$1	1	85	89	12.0000
(..(	chr15:44085994-44086211(+)$1	1	12	16	12.0000
)).)	chr1:161192668-161192889(-)$1	1	92	96	12.0000
))))	chr19:55998612-55998873(+)$1	1	131	135	12.0000
..((	chr12:49434203-49434444(-)$1	1	2	6	12.0000
.)).	chr1:156707042-156707308(-)$1	1	33	37	12.0000
.)))	chr22:38355251-38355473(+)$1	1	45	49	12.0000
...(	chr19:17631782-17632038(+)$1	1	11	15	12.0000
(((.	chr1:153634709-153634988(-)$1	1	169	173	12.0000
.).(	chr15:90808977-90809253(+)$1	1	215	219	12.0000
((((	chr14:105219437-105219757(+)$1	1	260	264	12.0000
....	chr19:1105387-1105607(+)$1	1	52	56	12.0000
...)	chr17:1680523-1680747(+)$1	1	94	98	12.0000
))).	chr1:145508857-145509152(+)$1	1	289	293	12.0000
.)))	chr9:35099903-35100156(-)$1	1	172	176	12.0000
.)))	chr19:59061731-59061977(+)$1	1	41	45	12.0000
.)))	chr19:8367300-8367551(-)$1	1	78	82	12.0000
..((	chr15:77345021-77345277(-)$1	1	128	132	12.0000
))).	chr19:38873887-38874203(+)$1	1	16	20	12.0000
..((	chr6:33258365-33258635(+)$1	1	22	26	12.0000
...)	chr12:56553762-56554013(+)$1	1	209	213	12.0000
..((	chr19:36128345-36128654(+)$1	1	101	105	12.0000
(((.	chr17:7306270-7306543(-)$1	1	108	112	12.0000
...)	chr5:149826365-149826594(-)$1	1	49	53	12.0000
((((	chr11:6703347-6703597(-)$1	1	116	120	12.0000
))))	chr7:75615650-75615925(+)$1	1	130	134	12.0000
((((	chr16:56643074-56643293(+)$1	1	85	89	12.0000
(((.	chr14:23389982-23390266(-)$1	1	155	159	12.0000
((((	chr6:31625759-31625981(+)$1	1	36	40	12.0000
.(((	chr1:153604083-153604351(+)$1	1	6	10	12.0000
).))	chr1:161192660-161192868(-)$1	1	71	75	12.0000
.(((	chr19:45412063-45412355(+)$1	1	5	9	12.0000
((((	chr17:79674141-79674467(+)$1	1	32	36	12.0000
((((	chr19:40331005-40331253(-)$1	1	30	34	12.0000
)).)	chr5:132202502-132202772(+)$1	1	35	39	12.0000
(((.	chr4:155506636-155506852(-)$1	1	153	157	12.0000
(((.	chr4:74319449-74319661(+)$1	1	110	114	12.0000
.)))	chr14:24687285-24687522(-)$1	1	78	82	12.0000
((((	chrX:47001621-47001875(-)$1	1	16	20	12.0000
(((.	chr19:2271300-2271528(+)$1	1	26	30	12.0000
(..(	chr17:79857751-79858014(+)$1	1	4	8	12.0000
(((.	chr17:7417313-7417573(+)$1	1	102	106	12.0000
)..)	chr20:35240400-35240660(+)$1	1	168	172	12.0000
((((	chr12:58111977-58112250(+)$1	1	145	149	12.0000
.)))	chr14:74951017-74951306(-)$1	1	56	60	12.0000
((((	chr3:133495959-133496163(+)$1	1	100	104	12.0000
...)	chr16:56642806-56643055(+)$1	1	103	107	12.0000
....	chr9:140446424-140446649(+)$1	1	117	121	12.0000
))).	chr6:34385176-34385424(-)$1	1	25	29	12.0000
((.(	chr5:135391381-135391606(+)$1	1	46	50	12.0000
)..(	chr19:44012050-44012301(-)$1	1	16	20	12.0000
((((	chr10:135165796-135166110(+)$1	1	24	28	12.0000
(..(	chr9:140137831-140138140(+)$1	1	20	24	12.0000
)).)	chr2:25013217-25013489(-)$1	1	77	81	12.0000
..))	chrX:130407766-130408007(-)$1	1	175	179	12.0000
(((.	chr1:156563126-156563390(+)$1	1	58	62	12.0000
..))	chr6:33243854-33244061(+)$1	1	136	140	12.0000
))))	chr16:4559582-4559933(+)$1	1	51	55	12.0000
(.((	chr3:133497347-133497554(+)$1	1	86	90	12.0000
))).	chr2:54197743-54198040(-)$1	1	110	114	12.0000
((((	chr11:1774642-1774868(-)$1	1	48	52	12.0000
)..(	chr20:33867360-33867642(-)$1	1	166	170	12.0000
...)	chr1:173872925-173873192(-)$1	1	90	94	12.0000
...)	chr19:40325082-40325303(-)$1	1	62	66	12.0000
((((	chr19:12779857-12780124(-)$1	1	11	15	12.0000
...(	chr8:145637724-145638040(-)$1	1	24	28	12.0000
.((.	chr15:64448189-64448444(-)$1	1	16	20	12.0000
.)))	chr3:197682540-197682756(+)$1	1	73	77	12.0000
((..	chr3:52027642-52027869(-)$1	1	158	162	12.0000
((((	chr11:61025979-61026250(-)$1	1	47	51	12.0000
...)	chr16:56660741-56660973(+)$1	1	59	63	12.0000
((..	chr18:77710778-77711031(-)$1	1	119	123	12.0000
(..(	chr19:18707358-18707613(-)$1	1	41	45	12.0000
(..(	chr20:62373829-62374066(+)$1	1	3	7	12.0000
.)))	chr1:19949955-19950179(+)$1	1	171	175	12.0000

#PSSM
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	

#score	1068.0000000000007
#seq	89
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_CDS_m2_run2.nuc.txt

#NT
UCUU	chr16:27518239-27518540(-)$1	301	26	30	12.0000
UCUU	chr8:48744279-48744517(-)$1	238	150	154	12.0000
UCUU	chr2:73471702-73471943(+)$1	241	43	47	12.0000
UCUU	chr1:39838107-39838366(+)$1	259	29	33	12.0000
UCUU	chr6:30513778-30514058(-)$1	280	228	232	12.0000
UCUU	chrX:77369213-77369488(+)$1	275	14	18	12.0000
UCUU	chr4:3124515-3124759(+)$1	244	46	50	12.0000
UCUU	chr16:11988715-11988944(-)$1	229	145	149	12.0000
UCUU	chr3:139092054-139092311(-)$1	257	45	49	12.0000
UCUU	chr3:139092139-139092355(-)$1	216	89	93	12.0000
UCUU	chr11:34472434-34472741(+)$1	307	18	22	12.0000
UCUU	chr15:89169307-89169674(+)$1	367	62	66	12.0000
UCUU	chr11:18425151-18425398(+)$1	247	81	85	12.0000
UCUU	chr17:30205168-30205447(-)$1	279	65	69	12.0000
UCUU	chr17:43163887-43164121(+)$1	234	151	155	12.0000
UCUU	chr1:226576289-226576557(-)$1	268	250	254	12.0000
UCUU	chr11:57569373-57569663(+)$1	290	180	184	12.0000
UCUU	chr11:62286437-62286678(-)$1	241	162	166	12.0000
UCUU	chr2:171812921-171813170(+)$1	249	10	14	12.0000
UCUU	chr2:183845928-183846188(-)$1	260	29	33	12.0000
UCUU	chr17:73951630-73951863(-)$1	233	3	7	12.0000
UCuu	chr2:98263730-98263957(+)$1	227	33	37	12.0000
UCUU	chr20:43530116-43530385(+)$1	269	26	30	12.0000
UCUU	chr19:7620392-7620724(+)$1	332	182	186	12.0000
UCUU	chr4:83977987-83978303(+)$1	316	22	26	12.0000
UCUU	chr17:1554666-1554944(-)$1	278	84	88	12.0000
UCUU	chr2:54853228-54853460(+)$1	232	193	197	12.0000
UCUU	chr11:111590398-111590795(+)$1	397	22	26	12.0000
UCUU	chr19:52723359-52723602(+)$1	243	92	96	12.0000
UCUU	chr2:26437229-26437479(-)$1	250	11	15	12.0000
UCUU	chr11:63756025-63756314(+)$1	289	20	24	12.0000
UCUU	chr10:120933930-120934204(-)$1	274	223	227	12.0000
UCUU	chr5:138145630-138145908(+)$1	278	62	66	12.0000
UCUU	chr1:11076817-11077137(+)$1	320	234	238	12.0000
UCUU	chr1:31761999-31762266(-)$1	267	220	224	12.0000
UCUU	chr1:173456773-173457026(+)$1	253	89	93	12.0000
UCUU	chr13:48522989-48523250(-)$1	261	4	8	12.0000
UCUU	chr20:469273-469522(-)$1	249	83	87	12.0000
UCUU	chr3:49136563-49136783(-)$1	220	135	139	12.0000
ucuu	chr1:202731732-202731999(-)$1	267	200	204	12.0000
UCUU	chr12:992533-992799(+)$1	266	17	21	12.0000
UCUU	chr16:70588917-70589209(+)$1	292	15	19	12.0000
UCUU	chr22:42032455-42032720(+)$1	265	21	25	12.0000
UCUU	chr5:225951-226263(+)$1	312	36	40	12.0000
UCUU	chr20:49509206-49509467(-)$1	261	91	95	12.0000
UCUU	chr2:26508194-26508474(+)$1	280	35	39	12.0000
UCUU	chr21:33726157-33726472(-)$1	315	46	50	12.0000
UCUU	chr17:38153488-38153731(+)$1	243	77	81	12.0000
UCUU	chr14:102476577-102476843(+)$1	266	22	26	12.0000
UCUU	chr11:118453865-118454131(+)$1	266	2	6	12.0000
UCUU	chr2:73470034-73470247(+)$1	213	89	93	12.0000
UCUU	chr5:138253332-138253591(+)$1	259	88	92	12.0000
UCUU	chr22:38895390-38895605(-)$1	215	80	84	12.0000
UCUU	chr17:61906754-61907016(+)$1	262	28	32	12.0000
UCUU	chr7:45141845-45142162(-)$1	317	263	267	12.0000
UCUU	chr16:88652907-88653171(+)$1	264	173	177	12.0000
UCUU	chr9:35068147-35068371(-)$1	224	146	150	12.0000
UCUU	chr14:64882060-64882310(+)$1	250	33	37	12.0000
UCUU	chr22:30974758-30975055(-)$1	297	238	242	12.0000
UCUU	chr6:7585212-7585444(+)$1	232	104	108	12.0000
UCUU	chr1:39908032-39908326(+)$1	294	1	5	12.0000
UCUU	chr11:118454509-118454821(+)$1	312	1	5	12.0000
UCUU	chr20:55948441-55948738(+)$1	297	43	47	12.0000
UCUU	chr16:27508912-27509187(-)$1	275	243	247	12.0000
UCUU	chr16:3739028-3739235(-)$1	207	17	21	12.0000
UCUU	chr15:91020857-91021162(+)$1	305	146	150	12.0000
UCUU	chrX:47058518-47058785(+)$1	267	245	249	12.0000
UCUU	chr10:120928657-120928951(-)$1	294	102	106	12.0000
UCUU	chr17:4701499-4701761(+)$1	262	58	62	12.0000
UCUU	chr9:80942991-80943197(+)$1	206	65	69	12.0000
UCUU	chr2:26454999-26455247(-)$1	248	22	26	12.0000
UCUU	chr17:19575007-19575271(+)$1	264	182	186	12.0000
UCUU	chr2:69564982-69565275(-)$1	293	113	117	12.0000
UCUU	chr2:63833028-63833261(+)$1	233	160	164	12.0000
UCUU	chr14:102506853-102507072(+)$1	219	176	180	12.0000
UCUU	chr17:72762974-72763196(+)$1	222	161	165	12.0000

#otherMatches

#Struct PSSM
9999	chr11:61094150-61094417(-)$1	267	222	226	12.0000
GGGG	chr16:27518239-27518540(-)$1	301	26	30	12.0000
====	chr8:48744279-48744517(-)$1	238	150	154	12.0000
pppp	chr2:73471702-73471943(+)$1	241	43	47	12.0000
FFKK	chr1:39838107-39838366(+)$1	259	29	33	12.0000
FFFF	chr6:30513778-30514058(-)$1	280	228	232	12.0000
BB::	chrX:77369213-77369488(+)$1	275	14	18	12.0000
eeee	chr4:3124515-3124759(+)$1	244	46	50	12.0000
HHHH	chr16:11988715-11988944(-)$1	229	145	149	12.0000
uuuu	chr3:139092054-139092311(-)$1	257	45	49	12.0000
FFFF	chr3:139092139-139092355(-)$1	216	89	93	12.0000
G:::	chr11:34472434-34472741(+)$1	307	18	22	12.0000
c[dd	chr15:89169307-89169674(+)$1	367	62	66	12.0000
pppp	chr11:18425151-18425398(+)$1	247	81	85	12.0000
ffff	chr17:30205168-30205447(-)$1	279	65	69	12.0000
eeee	chr17:43163887-43164121(+)$1	234	151	155	12.0000
]ddd	chr1:226576289-226576557(-)$1	268	250	254	12.0000
ppee	chr11:57569373-57569663(+)$1	290	180	184	12.0000
||DD	chr11:62286437-62286678(-)$1	241	162	166	12.0000
::::	chr2:171812921-171813170(+)$1	249	10	14	12.0000
ff""	chr2:183845928-183846188(-)$1	260	29	33	12.0000
::ff	chr17:73951630-73951863(-)$1	233	3	7	12.0000
GGGG	chr2:98263730-98263957(+)$1	227	33	37	12.0000
{DDD	chr20:43530116-43530385(+)$1	269	26	30	12.0000
hhhh	chr19:7620392-7620724(+)$1	332	182	186	12.0000
^^^^	chr4:83977987-83978303(+)$1	316	22	26	12.0000
GG}F	chr17:1554666-1554944(-)$1	278	84	88	12.0000
HHHH	chr2:54853228-54853460(+)$1	232	193	197	12.0000
CKKD	chr11:111590398-111590795(+)$1	397	22	26	12.0000
eccc	chr19:52723359-52723602(+)$1	243	92	96	12.0000
WWWW	chr2:26437229-26437479(-)$1	250	11	15	12.0000
HHHH	chr11:63756025-63756314(+)$1	289	20	24	12.0000
GG\\	chr10:120933930-120934204(-)$1	274	223	227	12.0000
2ccc	chr5:138145630-138145908(+)$1	278	62	66	12.0000
FFFF	chr1:11076817-11077137(+)$1	320	234	238	12.0000
dd::	chr1:31761999-31762266(-)$1	267	220	224	12.0000
::::	chr1:173456773-173457026(+)$1	253	89	93	12.0000
::::	chr13:48522989-48523250(-)$1	261	4	8	12.0000
ccc[	chr20:469273-469522(-)$1	249	83	87	12.0000
oddd	chr3:49136563-49136783(-)$1	220	135	139	12.0000
hhhh	chr1:202731732-202731999(-)$1	267	200	204	12.0000
gggg	chr12:992533-992799(+)$1	266	17	21	12.0000
ffff	chr16:70588917-70589209(+)$1	292	15	19	12.0000
EEEE	chr22:42032455-42032720(+)$1	265	21	25	12.0000
====	chr5:225951-226263(+)$1	312	36	40	12.0000
MCCC	chr20:49509206-49509467(-)$1	261	91	95	12.0000
DDD:	chr2:26508194-26508474(+)$1	280	35	39	12.0000
ee[c	chr21:33726157-33726472(-)$1	315	46	50	12.0000
G{DD	chr17:38153488-38153731(+)$1	243	77	81	12.0000
FFFF	chr14:102476577-102476843(+)$1	266	22	26	12.0000
::::	chr11:118453865-118454131(+)$1	266	2	6	12.0000
gggg	chr2:73470034-73470247(+)$1	213	89	93	12.0000
ffff	chr5:138253332-138253591(+)$1	259	88	92	12.0000
gg^^	chr22:38895390-38895605(-)$1	215	80	84	12.0000
fffd	chr17:61906754-61907016(+)$1	262	28	32	12.0000
tttt	chr7:45141845-45142162(-)$1	317	263	267	12.0000
====	chr16:88652907-88653171(+)$1	264	173	177	12.0000
qqqq	chr9:35068147-35068371(-)$1	224	146	150	12.0000
iiii	chr14:64882060-64882310(+)$1	250	33	37	12.0000
iiii	chr22:30974758-30975055(-)$1	297	238	242	12.0000
C:hh	chr6:7585212-7585444(+)$1	232	104	108	12.0000
::::	chr1:39908032-39908326(+)$1	294	1	5	12.0000
eeee	chr11:118454509-118454821(+)$1	312	1	5	12.0000
gggg	chr20:55948441-55948738(+)$1	297	43	47	12.0000
nnnn	chr16:27508912-27509187(-)$1	275	243	247	12.0000
:::D	chr16:3739028-3739235(-)$1	207	17	21	12.0000
ffff	chr15:91020857-91021162(+)$1	305	146	150	12.0000
HHHH	chrX:47058518-47058785(+)$1	267	245	249	12.0000
gggg	chr10:120928657-120928951(-)$1	294	102	106	12.0000
cc::	chr17:4701499-4701761(+)$1	262	58	62	12.0000
mccc	chr9:80942991-80943197(+)$1	206	65	69	12.0000
::::	chr2:26454999-26455247(-)$1	248	22	26	12.0000
g[ee	chr17:19575007-19575271(+)$1	264	182	186	12.0000
eeee	chr2:69564982-69565275(-)$1	293	113	117	12.0000
oooo	chr2:63833028-63833261(+)$1	233	160	164	12.0000
pppp	chr14:102506853-102507072(+)$1	219	176	180	12.0000
gg!!	chr17:72762974-72763196(+)$1	222	161	165	12.0000

#DB
....	chr11:61094150-61094417(-)$1	1	222	226	12.0000
((((	chr16:27518239-27518540(-)$1	1	26	30	12.0000
((((	chr8:48744279-48744517(-)$1	1	150	154	12.0000
....	chr2:73471702-73471943(+)$1	1	43	47	12.0000
((..	chr1:39838107-39838366(+)$1	1	29	33	12.0000
))))	chr6:30513778-30514058(-)$1	1	228	232	12.0000
((..	chrX:77369213-77369488(+)$1	1	14	18	12.0000
))))	chr4:3124515-3124759(+)$1	1	46	50	12.0000
((((	chr16:11988715-11988944(-)$1	1	145	149	12.0000
....	chr3:139092054-139092311(-)$1	1	45	49	12.0000
))))	chr3:139092139-139092355(-)$1	1	89	93	12.0000
(...	chr11:34472434-34472741(+)$1	1	18	22	12.0000
(.((	chr15:89169307-89169674(+)$1	1	62	66	12.0000
....	chr11:18425151-18425398(+)$1	1	81	85	12.0000
))))	chr17:30205168-30205447(-)$1	1	65	69	12.0000
))))	chr17:43163887-43164121(+)$1	1	151	155	12.0000
.)))	chr1:226576289-226576557(-)$1	1	250	254	12.0000
..))	chr11:57569373-57569663(+)$1	1	180	184	12.0000
..))	chr11:62286437-62286678(-)$1	1	162	166	12.0000
....	chr2:171812921-171813170(+)$1	1	10	14	12.0000
((..	chr2:183845928-183846188(-)$1	1	29	33	12.0000
..((	chr17:73951630-73951863(-)$1	1	3	7	12.0000
((((	chr2:98263730-98263957(+)$1	1	33	37	12.0000
.(((	chr20:43530116-43530385(+)$1	1	26	30	12.0000
((((	chr19:7620392-7620724(+)$1	1	182	186	12.0000
....	chr4:83977987-83978303(+)$1	1	22	26	12.0000
)).)	chr17:1554666-1554944(-)$1	1	84	88	12.0000
))))	chr2:54853228-54853460(+)$1	1	193	197	12.0000
(..(	chr11:111590398-111590795(+)$1	1	22	26	12.0000
((((	chr19:52723359-52723602(+)$1	1	92	96	12.0000
....	chr2:26437229-26437479(-)$1	1	11	15	12.0000
((((	chr11:63756025-63756314(+)$1	1	20	24	12.0000
))..	chr10:120933930-120934204(-)$1	1	223	227	12.0000
.)))	chr5:138145630-138145908(+)$1	1	62	66	12.0000
))))	chr1:11076817-11077137(+)$1	1	234	238	12.0000
))..	chr1:31761999-31762266(-)$1	1	220	224	12.0000
....	chr1:173456773-173457026(+)$1	1	89	93	12.0000
....	chr13:48522989-48523250(-)$1	1	4	8	12.0000
(((.	chr20:469273-469522(-)$1	1	83	87	12.0000
.)))	chr3:49136563-49136783(-)$1	1	135	139	12.0000
))))	chr1:202731732-202731999(-)$1	1	200	204	12.0000
((((	chr12:992533-992799(+)$1	1	17	21	12.0000
((((	chr16:70588917-70589209(+)$1	1	15	19	12.0000
((((	chr22:42032455-42032720(+)$1	1	21	25	12.0000
((((	chr5:225951-226263(+)$1	1	36	40	12.0000
.(((	chr20:49509206-49509467(-)$1	1	91	95	12.0000
(((.	chr2:26508194-26508474(+)$1	1	35	39	12.0000
((.(	chr21:33726157-33726472(-)$1	1	46	50	12.0000
(.((	chr17:38153488-38153731(+)$1	1	77	81	12.0000
((((	chr14:102476577-102476843(+)$1	1	22	26	12.0000
....	chr11:118453865-118454131(+)$1	1	2	6	12.0000
((((	chr2:73470034-73470247(+)$1	1	89	93	12.0000
))))	chr5:138253332-138253591(+)$1	1	88	92	12.0000
((..	chr22:38895390-38895605(-)$1	1	80	84	12.0000
)))(	chr17:61906754-61907016(+)$1	1	28	32	12.0000
....	chr7:45141845-45142162(-)$1	1	263	267	12.0000
))))	chr16:88652907-88653171(+)$1	1	173	177	12.0000
....	chr9:35068147-35068371(-)$1	1	146	150	12.0000
((((	chr14:64882060-64882310(+)$1	1	33	37	12.0000
))))	chr22:30974758-30975055(-)$1	1	238	242	12.0000
).((	chr6:7585212-7585444(+)$1	1	104	108	12.0000
....	chr1:39908032-39908326(+)$1	1	1	5	12.0000
((((	chr11:118454509-118454821(+)$1	1	1	5	12.0000
))))	chr20:55948441-55948738(+)$1	1	43	47	12.0000
....	chr16:27508912-27509187(-)$1	1	243	247	12.0000
...(	chr16:3739028-3739235(-)$1	1	17	21	12.0000
))))	chr15:91020857-91021162(+)$1	1	146	150	12.0000
))))	chrX:47058518-47058785(+)$1	1	245	249	12.0000
))))	chr10:120928657-120928951(-)$1	1	102	106	12.0000
))..	chr17:4701499-4701761(+)$1	1	58	62	12.0000
.)))	chr9:80942991-80943197(+)$1	1	65	69	12.0000
....	chr2:26454999-26455247(-)$1	1	22	26	12.0000
(.((	chr17:19575007-19575271(+)$1	1	182	186	12.0000
((((	chr2:69564982-69565275(-)$1	1	113	117	12.0000
....	chr2:63833028-63833261(+)$1	1	160	164	12.0000
....	chr14:102506853-102507072(+)$1	1	176	180	12.0000
((..	chr17:72762974-72763196(+)$1	1	161	165	12.0000

#PSSM
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	
U : 0.97	u : 0.02	
U : 0.97	u : 0.02	

#score	924.0000000000001
#seq	77
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_transcript_m3_run2.nuc.txt

#NT
UCCU	chr6:31746643-31746918(-)$1	275	129	133	11.9999
UCCU	chr19:34960058-34960344(+)$1	286	134	138	11.9999
UCCU	chr10:75010312-75010540(-)$1	228	36	40	11.9999
UCCU	chr22:37425640-37425883(+)$1	243	170	174	11.9999
UCCU	chr12:6857086-6857316(-)$1	230	25	29	11.9999
UCCU	chr17:30807843-30808101(+)$1	258	46	50	11.9999
UCCU	chr2:85875805-85876083(+)$1	278	43	47	11.9999
UCCU	chr11:67353910-67354135(+)$1	225	82	86	11.9999
UCCU	chr6:74229659-74229879(-)$1	220	13	17	11.9999
UCCU	chr12:131360515-131360775(+)$1	260	4	8	11.9999
UCCU	chr9:131071634-131071898(-)$1	264	10	14	11.9999
UCCU	chr11:68458401-68458671(+)$1	270	4	8	11.9999
UCCU	chr15:72491793-72492017(-)$1	224	14	18	11.9999
UCCU	chr2:97541823-97542070(-)$1	247	13	17	11.9999
UCCU	chr8:97247636-97247868(-)$1	232	64	68	11.9999
UCCU	chr20:34362478-34362745(+)$1	267	30	34	11.9999
UCCU	chr1:151239706-151239989(+)$1	283	232	236	11.9999
UCCU	chr12:6879263-6879478(+)$1	215	21	25	11.9999
UCCU	chrX:41207202-41207449(+)$1	247	113	117	11.9999
UCCU	chr19:3465067-3465361(+)$1	294	50	54	11.9999
UCCU	chr17:73314076-73314353(-)$1	277	124	128	11.9999
UCCU	chrX:49030964-49031268(+)$1	304	43	47	11.9999
UCCU	chr19:18417981-18418240(-)$1	259	207	211	11.9999
UCCU	chr12:112451294-112451513(+)$1	219	27	31	11.9999
UCCU	chr12:57628310-57628547(+)$1	237	10	14	11.9999
UCCU	chr22:29696133-29696351(+)$1	218	129	133	11.9999
UCCU	chr8:100890288-100890592(-)$1	304	32	36	11.9999
UCCU	chr11:61569222-61569447(-)$1	225	150	154	11.9999
uccU	chr19:18644030-18644257(-)$1	227	28	32	11.9999
UCCU	chr12:120532912-120533168(-)$1	256	131	135	11.9999
UCCU	chr12:56119504-56119740(-)$1	236	37	41	11.9999
UCCU	chr9:33046922-33047210(-)$1	288	206	210	11.9999
UCCU	chr16:88712429-88712705(-)$1	276	4	8	11.9999
UCCU	chr11:18428759-18428967(+)$1	208	139	143	11.9999
UCCU	chr1:46654481-46654731(-)$1	250	49	53	11.9999
UCCU	chr14:104380197-104380422(-)$1	225	83	87	11.9999
UCCU	chr15:69745136-69745376(+)$1	240	26	30	11.9999
UCCU	chr11:10818512-10818752(-)$1	240	51	55	11.9999
UCCU	chr17:40463584-40463826(+)$1	242	197	201	11.9999
UCCU	chr6:44122902-44123193(+)$1	291	123	127	11.9999
UCCU	chr17:42396911-42397136(-)$1	225	114	118	11.9999
UCCU	chrX:47518419-47518630(-)$1	211	83	87	11.9999
UCCU	chr2:217366050-217366280(+)$1	230	81	85	11.9999
UCCu	chr15:25584054-25584301(-)$1	247	242	246	11.9999
UCCU	chr19:18679793-18680028(+)$1	235	21	25	11.9999
UCCU	chr15:89442258-89442474(-)$1	216	63	67	11.9999
UCCU	chr12:109038845-109039108(-)$1	263	71	75	11.9999
UCCU	chr12:42835258-42835502(+)$1	244	105	109	11.9999
uccu	chr16:67471958-67472228(-)$1	270	104	108	11.9999
UCCU	chr1:47843844-47844117(+)$1	273	225	229	11.9999
UCCU	chr16:88874748-88874980(+)$1	232	32	36	11.9999
UCCU	chr9:127620119-127620346(-)$1	227	195	199	11.9999
UCCU	chr1:23636188-23636442(-)$1	254	188	192	11.9999
UCCU	chr19:47341343-47341584(-)$1	241	150	154	11.9999
UCCU	chr11:67273886-67274151(-)$1	265	45	49	11.9999
UCCU	chr11:65622254-65622461(-)$1	207	90	94	11.9999
UCCU	chr12:49952153-49952411(-)$1	258	65	69	11.9999
UCCU	chr3:52002826-52003176(-)$1	350	13	17	11.9999
UCCU	chr11:67799532-67799777(+)$1	245	12	16	11.9999
UCCU	chr20:35240449-35240688(+)$1	239	118	122	11.9999
UCCU	chr19:13065163-13065394(-)$1	231	191	195	11.9999
UCCU	chr16:2871465-2871759(+)$1	294	81	85	11.9999
UCCU	chr19:582831-583086(+)$1	255	41	45	11.9999
UCCU	chr10:1063169-1063444(+)$1	275	43	47	11.9999
UCCU	chr14:50050285-50050494(-)$1	209	117	121	11.9999
UCCU	chr16:227410-227619(+)$1	209	52	56	11.9999
UCCU	chr11:812672-812875(+)$1	203	72	76	11.9999
UCCU	chr19:39924084-39924298(-)$1	214	55	59	11.9999
UCCU	chr12:53692952-53693226(+)$1	274	18	22	11.9999
UCCU	chr9:97222949-97223180(+)$1	231	217	221	11.9999
UCCU	chr1:94353973-94354223(-)$1	250	129	133	11.9999
UCCU	chr11:67353936-67354184(+)$1	248	56	60	11.9999
UCCU	chr22:38062685-38062931(+)$1	246	22	26	11.9999
UCCU	chr1:44442772-44442988(+)$1	216	145	149	11.9999
UCCU	chr1:36646084-36646377(+)$1	293	129	133	11.9999
UCCU	chr9:131303471-131303763(+)$1	292	176	180	11.9999
UCCU	chr7:26231425-26231634(-)$1	209	89	93	11.9999
UCCU	chr12:56119804-56120030(-)$1	226	60	64	11.9999

#otherMatches

#Struct PSSM
dbbc	chr9:130211878-130212087(-)$1	209	10	14	11.9999
:ccc	chr6:31746643-31746918(-)$1	275	129	133	11.9999
CCCG	chr19:34960058-34960344(+)$1	286	134	138	11.9999
EEEE	chr10:75010312-75010540(-)$1	228	36	40	11.9999
iiii	chr22:37425640-37425883(+)$1	243	170	174	11.9999
qqqq	chr12:6857086-6857316(-)$1	230	25	29	11.9999
::::	chr17:30807843-30808101(+)$1	258	46	50	11.9999
IIII	chr2:85875805-85876083(+)$1	278	43	47	11.9999
nnnn	chr11:67353910-67354135(+)$1	225	82	86	11.9999
::::	chr6:74229659-74229879(-)$1	220	13	17	11.9999
:::H	chr12:131360515-131360775(+)$1	260	4	8	11.9999
iiii	chr9:131071634-131071898(-)$1	264	10	14	11.9999
###c	chr11:68458401-68458671(+)$1	270	4	8	11.9999
rrrr	chr15:72491793-72492017(-)$1	224	14	18	11.9999
vvvv	chr2:97541823-97542070(-)$1	247	13	17	11.9999
fFFF	chr8:97247636-97247868(-)$1	232	64	68	11.9999
DDDD	chr20:34362478-34362745(+)$1	267	30	34	11.9999
===2	chr1:151239706-151239989(+)$1	283	232	236	11.9999
iii:	chr12:6879263-6879478(+)$1	215	21	25	11.9999
IIII	chrX:41207202-41207449(+)$1	247	113	117	11.9999
bb22	chr19:3465067-3465361(+)$1	294	50	54	11.9999
ffbb	chr17:73314076-73314353(-)$1	277	124	128	11.9999
++++	chrX:49030964-49031268(+)$1	304	43	47	11.9999
ffoo	chr19:18417981-18418240(-)$1	259	207	211	11.9999
HHHH	chr12:112451294-112451513(+)$1	219	27	31	11.9999
hhhh	chr12:57628310-57628547(+)$1	237	10	14	11.9999
::::	chr22:29696133-29696351(+)$1	218	129	133	11.9999
e[dd	chr8:100890288-100890592(-)$1	304	32	36	11.9999
dd[c	chr11:61569222-61569447(-)$1	225	150	154	11.9999
dhhh	chr19:18644030-18644257(-)$1	227	28	32	11.9999
:===	chr12:120532912-120533168(-)$1	256	131	135	11.9999
FFFF	chr12:56119504-56119740(-)$1	236	37	41	11.9999
eeee	chr9:33046922-33047210(-)$1	288	206	210	11.9999
EEE{	chr16:88712429-88712705(-)$1	276	4	8	11.9999
dddd	chr11:18428759-18428967(+)$1	208	139	143	11.9999
====	chr1:46654481-46654731(-)$1	250	49	53	11.9999
fffe	chr14:104380197-104380422(-)$1	225	83	87	11.9999
::::	chr15:69745136-69745376(+)$1	240	26	30	11.9999
KKDD	chr11:10818512-10818752(-)$1	240	51	55	11.9999
GGGG	chr17:40463584-40463826(+)$1	242	197	201	11.9999
ccc[	chr6:44122902-44123193(+)$1	291	123	127	11.9999
>>>>	chr17:42396911-42397136(-)$1	225	114	118	11.9999
fooo	chrX:47518419-47518630(-)$1	211	83	87	11.9999
ooof	chr2:217366050-217366280(+)$1	230	81	85	11.9999
GGG:	chr15:25584054-25584301(-)$1	247	242	246	11.9999
::::	chr19:18679793-18680028(+)$1	235	21	25	11.9999
ffff	chr15:89442258-89442474(-)$1	216	63	67	11.9999
ccce	chr12:109038845-109039108(-)$1	263	71	75	11.9999
&&&&	chr12:42835258-42835502(+)$1	244	105	109	11.9999
f]bb	chr16:67471958-67472228(-)$1	270	104	108	11.9999
HHHH	chr1:47843844-47844117(+)$1	273	225	229	11.9999
JJJJ	chr16:88874748-88874980(+)$1	232	32	36	11.9999
::::	chr9:127620119-127620346(-)$1	227	195	199	11.9999
::::	chr1:23636188-23636442(-)$1	254	188	192	11.9999
HHH}	chr19:47341343-47341584(-)$1	241	150	154	11.9999
FFFF	chr11:67273886-67274151(-)$1	265	45	49	11.9999
bb]e	chr11:65622254-65622461(-)$1	207	90	94	11.9999
5555	chr12:49952153-49952411(-)$1	258	65	69	11.9999
::::	chr3:52002826-52003176(-)$1	350	13	17	11.9999
ccnn	chr11:67799532-67799777(+)$1	245	12	16	11.9999
ee22	chr20:35240449-35240688(+)$1	239	118	122	11.9999
ffff	chr19:13065163-13065394(-)$1	231	191	195	11.9999
ppee	chr16:2871465-2871759(+)$1	294	81	85	11.9999
::::	chr19:582831-583086(+)$1	255	41	45	11.9999
dd!!	chr10:1063169-1063444(+)$1	275	43	47	11.9999
::::	chr14:50050285-50050494(-)$1	209	117	121	11.9999
CCC{	chr16:227410-227619(+)$1	209	52	56	11.9999
====	chr11:812672-812875(+)$1	203	72	76	11.9999
cccc	chr19:39924084-39924298(-)$1	214	55	59	11.9999
FFFF	chr12:53692952-53693226(+)$1	274	18	22	11.9999
22ee	chr9:97222949-97223180(+)$1	231	217	221	11.9999
gggd	chr1:94353973-94354223(-)$1	250	129	133	11.9999
nnnn	chr11:67353936-67354184(+)$1	248	56	60	11.9999
oooo	chr22:38062685-38062931(+)$1	246	22	26	11.9999
]a22	chr1:44442772-44442988(+)$1	216	145	149	11.9999
mmmd	chr1:36646084-36646377(+)$1	293	129	133	11.9999
ddd:	chr9:131303471-131303763(+)$1	292	176	180	11.9999
iiii	chr7:26231425-26231634(-)$1	209	89	93	11.9999
{DDD	chr12:56119804-56120030(-)$1	226	60	64	11.9999

#DB
((((	chr9:130211878-130212087(-)$1	1	10	14	11.9999
.(((	chr6:31746643-31746918(-)$1	1	129	133	11.9999
))))	chr19:34960058-34960344(+)$1	1	134	138	11.9999
((((	chr10:75010312-75010540(-)$1	1	36	40	11.9999
))))	chr22:37425640-37425883(+)$1	1	170	174	11.9999
....	chr12:6857086-6857316(-)$1	1	25	29	11.9999
....	chr17:30807843-30808101(+)$1	1	46	50	11.9999
((((	chr2:85875805-85876083(+)$1	1	43	47	11.9999
....	chr11:67353910-67354135(+)$1	1	82	86	11.9999
....	chr6:74229659-74229879(-)$1	1	13	17	11.9999
...(	chr12:131360515-131360775(+)$1	1	4	8	11.9999
((((	chr9:131071634-131071898(-)$1	1	10	14	11.9999
...(	chr11:68458401-68458671(+)$1	1	4	8	11.9999
....	chr15:72491793-72492017(-)$1	1	14	18	11.9999
....	chr2:97541823-97542070(-)$1	1	13	17	11.9999
)(((	chr8:97247636-97247868(-)$1	1	64	68	11.9999
((((	chr20:34362478-34362745(+)$1	1	30	34	11.9999
))).	chr1:151239706-151239989(+)$1	1	232	236	11.9999
))).	chr12:6879263-6879478(+)$1	1	21	25	11.9999
((((	chrX:41207202-41207449(+)$1	1	113	117	11.9999
))..	chr19:3465067-3465361(+)$1	1	50	54	11.9999
((((	chr17:73314076-73314353(-)$1	1	124	128	11.9999
....	chrX:49030964-49031268(+)$1	1	43	47	11.9999
((..	chr19:18417981-18418240(-)$1	1	207	211	11.9999
((((	chr12:112451294-112451513(+)$1	1	27	31	11.9999
((((	chr12:57628310-57628547(+)$1	1	10	14	11.9999
....	chr22:29696133-29696351(+)$1	1	129	133	11.9999
(.((	chr8:100890288-100890592(-)$1	1	32	36	11.9999
((.(	chr11:61569222-61569447(-)$1	1	150	154	11.9999
((((	chr19:18644030-18644257(-)$1	1	28	32	11.9999
.(((	chr12:120532912-120533168(-)$1	1	131	135	11.9999
((((	chr12:56119504-56119740(-)$1	1	37	41	11.9999
((((	chr9:33046922-33047210(-)$1	1	206	210	11.9999
(((.	chr16:88712429-88712705(-)$1	1	4	8	11.9999
((((	chr11:18428759-18428967(+)$1	1	139	143	11.9999
))))	chr1:46654481-46654731(-)$1	1	49	53	11.9999
((((	chr14:104380197-104380422(-)$1	1	83	87	11.9999
....	chr15:69745136-69745376(+)$1	1	26	30	11.9999
..((	chr11:10818512-10818752(-)$1	1	51	55	11.9999
))))	chr17:40463584-40463826(+)$1	1	197	201	11.9999
(((.	chr6:44122902-44123193(+)$1	1	123	127	11.9999
....	chr17:42396911-42397136(-)$1	1	114	118	11.9999
(...	chrX:47518419-47518630(-)$1	1	83	87	11.9999
...)	chr2:217366050-217366280(+)$1	1	81	85	11.9999
))).	chr15:25584054-25584301(-)$1	1	242	246	11.9999
....	chr19:18679793-18680028(+)$1	1	21	25	11.9999
((((	chr15:89442258-89442474(-)$1	1	63	67	11.9999
))))	chr12:109038845-109039108(-)$1	1	71	75	11.9999
....	chr12:42835258-42835502(+)$1	1	105	109	11.9999
).))	chr16:67471958-67472228(-)$1	1	104	108	11.9999
))))	chr1:47843844-47844117(+)$1	1	225	229	11.9999
((((	chr16:88874748-88874980(+)$1	1	32	36	11.9999
....	chr9:127620119-127620346(-)$1	1	195	199	11.9999
....	chr1:23636188-23636442(-)$1	1	188	192	11.9999
))).	chr19:47341343-47341584(-)$1	1	150	154	11.9999
((((	chr11:67273886-67274151(-)$1	1	45	49	11.9999
)).)	chr11:65622254-65622461(-)$1	1	90	94	11.9999
....	chr12:49952153-49952411(-)$1	1	65	69	11.9999
....	chr3:52002826-52003176(-)$1	1	13	17	11.9999
((..	chr11:67799532-67799777(+)$1	1	12	16	11.9999
))..	chr20:35240449-35240688(+)$1	1	118	122	11.9999
((((	chr19:13065163-13065394(-)$1	1	191	195	11.9999
..))	chr16:2871465-2871759(+)$1	1	81	85	11.9999
....	chr19:582831-583086(+)$1	1	41	45	11.9999
((..	chr10:1063169-1063444(+)$1	1	43	47	11.9999
....	chr14:50050285-50050494(-)$1	1	117	121	11.9999
(((.	chr16:227410-227619(+)$1	1	52	56	11.9999
((((	chr11:812672-812875(+)$1	1	72	76	11.9999
))))	chr19:39924084-39924298(-)$1	1	55	59	11.9999
((((	chr12:53692952-53693226(+)$1	1	18	22	11.9999
..))	chr9:97222949-97223180(+)$1	1	217	221	11.9999
)))(	chr1:94353973-94354223(-)$1	1	129	133	11.9999
....	chr11:67353936-67354184(+)$1	1	56	60	11.9999
....	chr22:38062685-38062931(+)$1	1	22	26	11.9999
.)..	chr1:44442772-44442988(+)$1	1	145	149	11.9999
...)	chr1:36646084-36646377(+)$1	1	129	133	11.9999
))).	chr9:131303471-131303763(+)$1	1	176	180	11.9999
((((	chr7:26231425-26231634(-)$1	1	89	93	11.9999
.(((	chr12:56119804-56120030(-)$1	1	60	64	11.9999

#PSSM
U : 0.97	u : 0.02	
C : 0.97	c : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	

#score	947.9999999999998
#seq	79
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_CDS_m1_run2.nuc.txt

#NT
GAG	chr14:35099049-35099318(-)$1	269	23	26	8.9999
GAG	chr3:48451382-48451604(-)$1	222	43	46	8.9999
GAG	chr17:74381954-74382203(+)$1	249	205	208	8.9999
GAG	chr17:7010948-7011255(-)$1	307	29	32	8.9999
GAG	chr2:128180682-128180991(+)$1	309	43	46	8.9999
GAG	chrM:14235-14449(-)$1	214	0	3	8.9999
GAG	chr7:100282732-100283073(-)$1	341	1	4	8.9999
GAG	chr19:1012061-1012406(-)$1	345	148	151	8.9999
GAG	chr20:2819566-2819827(-)$1	261	102	105	8.9999
GAG	chr1:145441068-145441318(+)$1	250	148	151	8.9999
GAG	chr20:60856116-60856361(+)$1	245	70	73	8.9999
GAG	chr16:67984709-67984966(-)$1	257	0	3	8.9999
GAG	chr2:219267643-219267872(+)$1	229	144	147	8.9999
GAG	chr6:37139166-37139392(+)$1	226	34	37	8.9999
GAG	chrX:153668587-153668866(+)$1	279	156	159	8.9999
GAG	chr16:29816008-29816262(+)$1	254	13	16	8.9999
GAG	chr1:11718308-11718608(+)$1	300	14	17	8.9999
GAG	chr17:79865281-79865532(-)$1	251	18	21	8.9999
GAG	chrM:14367-14600(-)$1	233	68	71	8.9999
GAG	chr20:61452781-61453044(+)$1	263	2	5	8.9999
GAG	chr17:80016426-80016720(-)$1	294	66	69	8.9999
GAG	chr20:56136586-56136834(+)$1	248	28	31	8.9999
GAG	chr14:35872778-35872996(-)$1	218	60	63	8.9999
GAG	chr17:73871336-73871584(-)$1	248	37	40	8.9999
GAG	chr19:46357608-46357893(-)$1	285	12	15	8.9999
GAG	chr11:70265862-70266136(+)$1	274	44	47	8.9999
GAG	chr6:134493183-134493437(-)$1	254	56	59	8.9999
GAG	chrM:14282-14501(-)$1	219	52	55	8.9999
GAG	chr3:5021991-5022271(+)$1	280	24	27	8.9999
gag	chrM:3215-3459(+)$1	244	27	30	8.9999
GAG	chrM:14181-14398(-)$1	217	18	21	8.9999
GAG	chr9:135930323-135930613(+)$1	290	24	27	8.9999
GAG	chr16:67976993-67977279(-)$1	286	6	9	8.9999
GAG	chr19:59059987-59060219(+)$1	232	28	31	8.9999
gag	chr20:56140285-56140521(+)$1	236	2	5	8.9999
GAG	chr7:142962095-142962413(+)$1	318	30	33	8.9999
GAG	chr1:11718441-11718755(+)$1	314	112	115	8.9999
GAG	chr7:73010686-73010948(-)$1	262	21	24	8.9999
GAG	chr22:50354825-50355088(+)$1	263	59	62	8.9999
GAG	chrM:14217-14422(-)$1	205	6	9	8.9999
GAG	chr20:62373115-62373359(+)$1	244	105	108	8.9999
GAG	chr16:72142227-72142502(+)$1	275	57	60	8.9999
GAG	chr14:54418396-54418665(-)$1	269	1	4	8.9999
GAG	chr17:27074221-27074456(+)$1	235	14	17	8.9999
GAG	chrM:14157-14381(-)$1	224	1	4	8.9999
GAG	chr1:43212718-43212989(-)$1	271	41	44	8.9999
GAG	chrM:14213-14417(-)$1	204	1	4	8.9999
GAG	chr1:156351927-156352197(+)$1	270	58	61	8.9999
GAG	chr19:1978465-1978720(+)$1	255	11	14	8.9999
GAG	chr11:721152-721409(+)$1	257	8	11	8.9999
GAG	chr16:50664604-50664846(+)$1	242	75	78	8.9999
GAG	chr11:67810675-67810936(+)$1	261	18	21	8.9999
GAG	chr17:77078044-77078299(+)$1	255	20	23	8.9999
GAG	chr1:1289508-1289782(-)$1	274	46	49	8.9999
GAG	chr7:142962001-142962239(+)$1	238	19	22	8.9999
GAG	chr1:44442124-44442392(+)$1	268	150	153	8.9999
GAG	chr16:50582551-50582813(+)$1	262	96	99	8.9999
GAG	chr9:139904666-139904966(-)$1	300	57	60	8.9999
GAG	chr17:4686007-4686270(+)$1	263	21	24	8.9999
GAG	chrM:14301-14514(-)$1	213	65	68	8.9999
GAG	chrM:10250-10469(+)$1	219	38	41	8.9999
GAG	chr3:48451341-48451548(-)$1	207	16	19	8.9999
GAG	chr16:67983707-67984038(-)$1	331	42	45	8.9999
GAG	chr17:7011759-7012033(-)$1	274	26	29	8.9999
GAG	chr9:140347388-140347614(-)$1	226	17	20	8.9999
GAG	chr16:67984010-67984326(-)$1	316	38	41	8.9999
GAG	chrM:14222-14435(-)$1	213	19	22	8.9999

#otherMatches

#Struct PSSM
nnb	chr20:56138169-56138419(+)$1	250	72	75	8.9999
e:F	chr14:35099049-35099318(-)$1	269	23	26	8.9999
c##	chr3:48451382-48451604(-)$1	222	43	46	8.9999
eee	chr17:74381954-74382203(+)$1	249	205	208	8.9999
AKK	chr17:7010948-7011255(-)$1	307	29	32	8.9999
nnn	chr2:128180682-128180991(+)$1	309	43	46	8.9999
::E	chrM:14235-14449(-)$1	214	0	3	8.9999
EEE	chr7:100282732-100283073(-)$1	341	1	4	8.9999
ddd	chr19:1012061-1012406(-)$1	345	148	151	8.9999
Dee	chr20:2819566-2819827(-)$1	261	102	105	8.9999
bb]	chr1:145441068-145441318(+)$1	250	148	151	8.9999
2ee	chr20:60856116-60856361(+)$1	245	70	73	8.9999
ccc	chr16:67984709-67984966(-)$1	257	0	3	8.9999
fff	chr2:219267643-219267872(+)$1	229	144	147	8.9999
ddd	chr6:37139166-37139392(+)$1	226	34	37	8.9999
ee"	chrX:153668587-153668866(+)$1	279	156	159	8.9999
:ee	chr16:29816008-29816262(+)$1	254	13	16	8.9999
"""	chr1:11718308-11718608(+)$1	300	14	17	8.9999
nnn	chr17:79865281-79865532(-)$1	251	18	21	8.9999
iii	chrM:14367-14600(-)$1	233	68	71	8.9999
::C	chr20:61452781-61453044(+)$1	263	2	5	8.9999
B{F	chr17:80016426-80016720(-)$1	294	66	69	8.9999
{FF	chr20:56136586-56136834(+)$1	248	28	31	8.9999
CCC	chr14:35872778-35872996(-)$1	218	60	63	8.9999
dbb	chr17:73871336-73871584(-)$1	248	37	40	8.9999
:::	chr19:46357608-46357893(-)$1	285	12	15	8.9999
555	chr11:70265862-70266136(+)$1	274	44	47	8.9999
ddd	chr6:134493183-134493437(-)$1	254	56	59	8.9999
d!!	chrM:14282-14501(-)$1	219	52	55	8.9999
{DD	chr3:5021991-5022271(+)$1	280	24	27	8.9999
llc	chrM:3215-3459(+)$1	244	27	30	8.9999
d[a	chrM:14181-14398(-)$1	217	18	21	8.9999
hhh	chr9:135930323-135930613(+)$1	290	24	27	8.9999
EEL	chr16:67976993-67977279(-)$1	286	6	9	8.9999
===	chr19:59059987-59060219(+)$1	232	28	31	8.9999
CBB	chr20:56140285-56140521(+)$1	236	2	5	8.9999
[cc	chr7:142962095-142962413(+)$1	318	30	33	8.9999
f!!	chr1:11718441-11718755(+)$1	314	112	115	8.9999
B{D	chr7:73010686-73010948(-)$1	262	21	24	8.9999
gqq	chr22:50354825-50355088(+)$1	263	59	62	8.9999
:::	chrM:14217-14422(-)$1	205	6	9	8.9999
777	chr20:62373115-62373359(+)$1	244	105	108	8.9999
a]e	chr16:72142227-72142502(+)$1	275	57	60	8.9999
EEE	chr14:54418396-54418665(-)$1	269	1	4	8.9999
!!g	chr17:27074221-27074456(+)$1	235	14	17	8.9999
:::	chrM:14157-14381(-)$1	224	1	4	8.9999
ddd	chr1:43212718-43212989(-)$1	271	41	44	8.9999
:::	chrM:14213-14417(-)$1	204	1	4	8.9999
e[a	chr1:156351927-156352197(+)$1	270	58	61	8.9999
]cc	chr19:1978465-1978720(+)$1	255	11	14	8.9999
c[a	chr11:721152-721409(+)$1	257	8	11	8.9999
hhh	chr16:50664604-50664846(+)$1	242	75	78	8.9999
ggg	chr11:67810675-67810936(+)$1	261	18	21	8.9999
eee	chr17:77078044-77078299(+)$1	255	20	23	8.9999
eee	chr1:1289508-1289782(-)$1	274	46	49	8.9999
CCC	chr7:142962001-142962239(+)$1	238	19	22	8.9999
dd]	chr1:44442124-44442392(+)$1	268	150	153	8.9999
hhh	chr16:50582551-50582813(+)$1	262	96	99	8.9999
AKK	chr9:139904666-139904966(-)$1	300	57	60	8.9999
ddd	chr17:4686007-4686270(+)$1	263	21	24	8.9999
d!!	chrM:14301-14514(-)$1	213	65	68	8.9999
d[c	chrM:10250-10469(+)$1	219	38	41	8.9999
:::	chr3:48451341-48451548(-)$1	207	16	19	8.9999
cc2	chr16:67983707-67984038(-)$1	331	42	45	8.9999
III	chr17:7011759-7012033(-)$1	274	26	29	8.9999
JJJ	chr9:140347388-140347614(-)$1	226	17	20	8.9999
d]c	chr16:67984010-67984326(-)$1	316	38	41	8.9999
:::	chrM:14222-14435(-)$1	213	19	22	8.9999

#DB
..)	chr20:56138169-56138419(+)$1	1	72	75	8.9999
).(	chr14:35099049-35099318(-)$1	1	23	26	8.9999
(..	chr3:48451382-48451604(-)$1	1	43	46	8.9999
)))	chr17:74381954-74382203(+)$1	1	205	208	8.9999
(..	chr17:7010948-7011255(-)$1	1	29	32	8.9999
...	chr2:128180682-128180991(+)$1	1	43	46	8.9999
..(	chrM:14235-14449(-)$1	1	0	3	8.9999
(((	chr7:100282732-100283073(-)$1	1	1	4	8.9999
)))	chr19:1012061-1012406(-)$1	1	148	151	8.9999
(((	chr20:2819566-2819827(-)$1	1	102	105	8.9999
)).	chr1:145441068-145441318(+)$1	1	148	151	8.9999
.))	chr20:60856116-60856361(+)$1	1	70	73	8.9999
(((	chr16:67984709-67984966(-)$1	1	0	3	8.9999
(((	chr2:219267643-219267872(+)$1	1	144	147	8.9999
(((	chr6:37139166-37139392(+)$1	1	34	37	8.9999
((.	chrX:153668587-153668866(+)$1	1	156	159	8.9999
.((	chr16:29816008-29816262(+)$1	1	13	16	8.9999
...	chr1:11718308-11718608(+)$1	1	14	17	8.9999
...	chr17:79865281-79865532(-)$1	1	18	21	8.9999
(((	chrM:14367-14600(-)$1	1	68	71	8.9999
..(	chr20:61452781-61453044(+)$1	1	2	5	8.9999
(.(	chr17:80016426-80016720(-)$1	1	66	69	8.9999
.((	chr20:56136586-56136834(+)$1	1	28	31	8.9999
(((	chr14:35872778-35872996(-)$1	1	60	63	8.9999
)))	chr17:73871336-73871584(-)$1	1	37	40	8.9999
...	chr19:46357608-46357893(-)$1	1	12	15	8.9999
...	chr11:70265862-70266136(+)$1	1	44	47	8.9999
)))	chr6:134493183-134493437(-)$1	1	56	59	8.9999
(..	chrM:14282-14501(-)$1	1	52	55	8.9999
.((	chr3:5021991-5022271(+)$1	1	24	27	8.9999
..)	chrM:3215-3459(+)$1	1	27	30	8.9999
(.(	chrM:14181-14398(-)$1	1	18	21	8.9999
)))	chr9:135930323-135930613(+)$1	1	24	27	8.9999
((.	chr16:67976993-67977279(-)$1	1	6	9	8.9999
(((	chr19:59059987-59060219(+)$1	1	28	31	8.9999
(((	chr20:56140285-56140521(+)$1	1	2	5	8.9999
.((	chr7:142962095-142962413(+)$1	1	30	33	8.9999
(..	chr1:11718441-11718755(+)$1	1	112	115	8.9999
(.(	chr7:73010686-73010948(-)$1	1	21	24	8.9999
(..	chr22:50354825-50355088(+)$1	1	59	62	8.9999
...	chrM:14217-14422(-)$1	1	6	9	8.9999
...	chr20:62373115-62373359(+)$1	1	105	108	8.9999
).)	chr16:72142227-72142502(+)$1	1	57	60	8.9999
(((	chr14:54418396-54418665(-)$1	1	1	4	8.9999
..(	chr17:27074221-27074456(+)$1	1	14	17	8.9999
...	chrM:14157-14381(-)$1	1	1	4	8.9999
)))	chr1:43212718-43212989(-)$1	1	41	44	8.9999
...	chrM:14213-14417(-)$1	1	1	4	8.9999
(.(	chr1:156351927-156352197(+)$1	1	58	61	8.9999
.))	chr19:1978465-1978720(+)$1	1	11	14	8.9999
(.(	chr11:721152-721409(+)$1	1	8	11	8.9999
)))	chr16:50664604-50664846(+)$1	1	75	78	8.9999
(((	chr11:67810675-67810936(+)$1	1	18	21	8.9999
(((	chr17:77078044-77078299(+)$1	1	20	23	8.9999
)))	chr1:1289508-1289782(-)$1	1	46	49	8.9999
(((	chr7:142962001-142962239(+)$1	1	19	22	8.9999
)).	chr1:44442124-44442392(+)$1	1	150	153	8.9999
)))	chr16:50582551-50582813(+)$1	1	96	99	8.9999
(..	chr9:139904666-139904966(-)$1	1	57	60	8.9999
)))	chr17:4686007-4686270(+)$1	1	21	24	8.9999
(..	chrM:14301-14514(-)$1	1	65	68	8.9999
(.(	chrM:10250-10469(+)$1	1	38	41	8.9999
...	chr3:48451341-48451548(-)$1	1	16	19	8.9999
)).	chr16:67983707-67984038(-)$1	1	42	45	8.9999
(((	chr17:7011759-7012033(-)$1	1	26	29	8.9999
(((	chr9:140347388-140347614(-)$1	1	17	20	8.9999
).)	chr16:67984010-67984326(-)$1	1	38	41	8.9999
...	chrM:14222-14435(-)$1	1	19	22	8.9999

#PSSM
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	

#score	611.9999999999993
#seq	68
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_transcript_m3_run2.nuc.txt

#NT
GGUCUGUGG	chr7:158153634-158153893(-)$1	259	45	54	20.2291
GGUCGGUGG	chr9:139996736-139996974(+)$1	238	19	28	16.2708
GGUAUGUGU	chr3:65524251-65524546(-)$1	295	2	11	13.8750
GGUAUGAGG	chr19:34885257-34885520(+)$1	263	64	73	14.9166
gggcugugg	chr8:123906249-123906571(+)$1	322	176	185	16.5833
agucugugu	chr2:62952478-62952740(+)$1	262	153	162	12.4166
ugucugugg	chr13:20617863-20618150(+)$1	287	157	166	16.6875
agugugugg	chr1:212933755-212934127(-)$1	372	278	287	14.6041
GGUCUCUGG	chr19:2196967-2197224(+)$1	257	172	181	15.6458
GGUCUGUGU	chr13:113869393-113869715(+)$1	322	118	127	16.0625
GGGCUGUGG	chr21:46281139-46281364(-)$1	225	101	110	16.5833
ggucugagg	chr7:155506576-155506848(+)$1	272	149	158	17.1041
ggugagugg	chr14:39835916-39836206(+)$1	290	44	53	14.3958
GCUUUGUGG	chr3:171847686-171847990(+)$1	304	79	88	13.3541
gguuugugg	chr19:57346321-57346551(-)$1	230	63	72	17.7291
GGUCUUUGG	chr16:20732361-20732630(+)$1	269	66	75	15.7500
GGUGUGGGG	chr20:62901400-62901751(+)$1	351	32	41	14.3958
GGUCGGUGG	chr9:139997379-139997618(+)$1	239	11	20	16.2708
GGUCUGUGG	chr19:34877475-34877736(+)$1	261	115	124	20.2291
AGUCUGUGG	chr7:158324767-158324987(-)$1	220	182	191	16.5833
GGUCUGAGG	chr19:34877635-34877932(+)$1	297	189	198	17.1041
GGUUUGCGG	chrX:41193775-41194031(+)$1	256	104	113	13.8750
GUUCUGUGG	chr20:35192525-35192805(-)$1	280	123	132	15.7500
GGUAUGAGG	chr19:34882310-34882592(+)$1	282	3	12	14.9166
GGUGUGUGG	chr8:452565-452814(-)$1	249	126	135	18.2500
GGUCUGUGG	chr7:5393829-5394077(-)$1	248	41	50	20.2291
GGGGUGUGG	chr6:32940631-32940945(+)$1	314	126	135	14.6041
GGUCAGAGG	chr14:39736596-39736844(+)$1	248	226	235	13.2500
gguaggugg	chr19:40582772-40583052(-)$1	280	109	118	14.0833
GGUGUGUGC	chr8:453041-453321(-)$1	280	75	84	13.8750
GGUCUUUGG	chr13:113870066-113870358(+)$1	292	217	226	15.7500
AGUGUGUGG	chr3:9510222-9510496(+)$1	274	102	111	14.6041
ggucagugg	chr7:155506198-155506460(+)$1	262	85	94	16.3749
GGGCUGUGG	chr21:46281187-46281444(-)$1	257	181	190	16.5833
GGUAUGAGG	chr19:34883584-34883810(+)$1	226	28	37	14.9166
UGUCUGAGG	chr19:34883529-34883760(+)$1	231	7	16	13.5625
UGUCUGUGG	chr9:140617122-140617409(+)$1	287	186	195	16.6875
GGCCUGAGG	chr10:101996780-101997041(-)$1	261	184	193	12.9375
GGUCUGUGG	chr20:60632257-60632522(-)$1	265	90	99	20.2291
gggaugugg	chr14:39836456-39836730(+)$1	274	61	70	14.3958
UGUCUGUGA	chr19:34877862-34878161(+)$1	299	26	35	12.3125
ggguugugg	chr5:281705-281988(+)$1	283	48	57	14.0833
UGUCUGUGG	chr9:140617484-140617736(+)$1	252	9	18	16.6875
GGUCAGUGG	chr9:139997325-139997563(+)$1	238	23	32	16.3749
ggugugugg	chr20:62901025-62901420(+)$1	395	234	243	18.2500
GCUCUGUGG	chr18:55798365-55798661(+)$1	296	141	150	15.8541
GGUGUGUGG	chr6:168331143-168331408(+)$1	265	118	127	18.2500

#otherMatches

#Struct PSSM
HHHHHHHHY	chr16:89483789-89484037(-)$1	248	228	237	13.5625
bb[bb[bb[	chr7:158153634-158153893(-)$1	259	45	54	20.2291
ebb[ddddd	chr9:139996736-139996974(+)$1	238	19	28	16.2708
BB{DDDDKK	chr3:65524251-65524546(-)$1	295	2	11	13.8750
++++++fff	chr19:34885257-34885520(+)$1	263	64	73	14.9166
ggccc!!ac	chr8:123906249-123906571(+)$1	322	176	185	16.5833
mffffffdd	chr2:62952478-62952740(+)$1	262	153	162	12.4166
33ccc]eee	chr13:20617863-20618150(+)$1	287	157	166	16.6875
:::::::::	chr1:212933755-212934127(-)$1	372	278	287	14.6041
eeeehhhhh	chr19:2196967-2197224(+)$1	257	172	181	15.6458
]affffffo	chr13:113869393-113869715(+)$1	322	118	127	16.0625
fffffqqqq	chr21:46281139-46281364(-)$1	225	101	110	16.5833
KDDDDKKCC	chr7:155506576-155506848(+)$1	272	149	158	17.1041
oooodddd]	chr14:39835916-39836206(+)$1	290	44	53	14.3958
[ddddtttt	chr3:171847686-171847990(+)$1	304	79	88	13.3541
E{CCCLLLE	chr19:57346321-57346551(-)$1	230	63	72	17.7291
nnnnnccc2	chr16:20732361-20732630(+)$1	269	66	75	15.7500
KBB{DDDD{	chr20:62901400-62901751(+)$1	351	32	41	14.3958
DMMMMDDDD	chr9:139997379-139997618(+)$1	239	11	20	16.2708
5ffffffhh	chr19:34877475-34877736(+)$1	261	115	124	20.2291
ppeeeee]f	chr7:158324767-158324987(-)$1	220	182	191	16.5833
33dddd22i	chr19:34877635-34877932(+)$1	297	189	198	17.1041
eeeeJJJJJ	chrX:41193775-41194031(+)$1	256	104	113	13.8750
###bb[fff	chr20:35192525-35192805(-)$1	280	123	132	15.7500
::ffffffd	chr19:34882310-34882592(+)$1	282	3	12	14.9166
ee[bb"""b	chr8:452565-452814(-)$1	249	126	135	18.2500
ee)))))))	chr7:5393829-5394077(-)$1	248	41	50	20.2291
BB{FFFFFF	chr6:32940631-32940945(+)$1	314	126	135	14.6041
ccc333===	chr14:39736596-39736844(+)$1	248	226	235	13.2500
cc[bb[ddd	chr19:40582772-40583052(-)$1	280	109	118	14.0833
=========	chr8:453041-453321(-)$1	280	75	84	13.8750
dddd:::::	chr13:113870066-113870358(+)$1	292	217	226	15.7500
ggggggeee	chr3:9510222-9510496(+)$1	274	102	111	14.6041
bb]ffffff	chr7:155506198-155506460(+)$1	262	85	94	16.3749
A}BB}DDDD	chr21:46281187-46281444(-)$1	257	181	190	16.5833
DD::::fff	chr19:34883584-34883810(+)$1	226	28	37	14.9166
nnnnfffff	chr19:34883529-34883760(+)$1	231	7	16	13.5625
44hhhhhhh	chr9:140617122-140617409(+)$1	287	186	195	16.6875
eeeee:bb[	chr10:101996780-101997041(-)$1	261	184	193	12.9375
rrrffffff	chr20:60632257-60632522(-)$1	265	90	99	20.2291
EEE:ddddm	chr14:39836456-39836730(+)$1	274	61	70	14.3958
pppppppbb	chr19:34877862-34878161(+)$1	299	26	35	12.3125
ooooooa]h	chr5:281705-281988(+)$1	283	48	57	14.0833
:::::::::	chr9:140617484-140617736(+)$1	252	9	18	16.6875
ggg[ddddd	chr9:139997325-139997563(+)$1	238	23	32	16.3749
d[eeeee[b	chr20:62901025-62901420(+)$1	395	234	243	18.2500
CCddddfff	chr18:55798365-55798661(+)$1	296	141	150	15.8541
[acccdddd	chr6:168331143-168331408(+)$1	265	118	127	18.2500

#DB
)))))))).	chr16:89483789-89484037(-)$1	1	228	237	13.5625
((.((.((.	chr7:158153634-158153893(-)$1	1	45	54	20.2291
(((.(((((	chr9:139996736-139996974(+)$1	1	19	28	16.2708
((.((((..	chr3:65524251-65524546(-)$1	1	2	11	13.8750
......(((	chr19:34885257-34885520(+)$1	1	64	73	14.9166
(((((..((	chr8:123906249-123906571(+)$1	1	176	185	16.5833
.))))))))	chr2:62952478-62952740(+)$1	1	153	162	12.4166
..))).)))	chr13:20617863-20618150(+)$1	1	157	166	16.6875
.........	chr1:212933755-212934127(-)$1	1	278	287	14.6041
))))(((((	chr19:2196967-2197224(+)$1	1	172	181	15.6458
.)((((((.	chr13:113869393-113869715(+)$1	1	118	127	16.0625
(((((....	chr21:46281139-46281364(-)$1	1	101	110	16.5833
.((((..((	chr7:155506576-155506848(+)$1	1	149	158	17.1041
....)))).	chr14:39835916-39836206(+)$1	1	44	53	14.3958
.((((....	chr3:171847686-171847990(+)$1	1	79	88	13.3541
(.(((...(	chr19:57346321-57346551(-)$1	1	63	72	17.7291
.....))).	chr16:20732361-20732630(+)$1	1	66	75	15.7500
.((.((((.	chr20:62901400-62901751(+)$1	1	32	41	14.3958
(....((((	chr9:139997379-139997618(+)$1	1	11	20	16.2708
.))))))))	chr19:34877475-34877736(+)$1	1	115	124	20.2291
..))))).)	chr7:158324767-158324987(-)$1	1	182	191	16.5833
..))))..)	chr19:34877635-34877932(+)$1	1	189	198	17.1041
)))))))))	chrX:41193775-41194031(+)$1	1	104	113	13.8750
...((.(((	chr20:35192525-35192805(-)$1	1	123	132	15.7500
..(((((((	chr19:34882310-34882592(+)$1	1	3	12	14.9166
((.((...(	chr8:452565-452814(-)$1	1	126	135	18.2500
((.......	chr7:5393829-5394077(-)$1	1	41	50	20.2291
((.((((((	chr6:32940631-32940945(+)$1	1	126	135	14.6041
)))...)))	chr14:39736596-39736844(+)$1	1	226	235	13.2500
((.((.(((	chr19:40582772-40583052(-)$1	1	109	118	14.0833
)))))))))	chr8:453041-453321(-)$1	1	75	84	13.8750
)))).....	chr13:113870066-113870358(+)$1	1	217	226	15.7500
)))))))))	chr3:9510222-9510496(+)$1	1	102	111	14.6041
)).))))))	chr7:155506198-155506460(+)$1	1	85	94	16.3749
).)).))))	chr21:46281187-46281444(-)$1	1	181	190	16.5833
((....(((	chr19:34883584-34883810(+)$1	1	28	37	14.9166
....)))))	chr19:34883529-34883760(+)$1	1	7	16	13.5625
..)))))))	chr9:140617122-140617409(+)$1	1	186	195	16.6875
))))).((.	chr10:101996780-101997041(-)$1	1	184	193	12.9375
...))))))	chr20:60632257-60632522(-)$1	1	90	99	20.2291
(((.((((.	chr14:39836456-39836730(+)$1	1	61	70	14.3958
.......))	chr19:34877862-34878161(+)$1	1	26	35	12.3125
......).)	chr5:281705-281988(+)$1	1	48	57	14.0833
.........	chr9:140617484-140617736(+)$1	1	9	18	16.6875
(((.(((((	chr9:139997325-139997563(+)$1	1	23	32	16.3749
(.(((((.(	chr20:62901025-62901420(+)$1	1	234	243	18.2500
(((((((((	chr18:55798365-55798661(+)$1	1	141	150	15.8541
.((((((((	chr6:168331143-168331408(+)$1	1	118	127	18.2500

#PSSM
G : 0.62	g : 0.18	U : 0.08	a : 0.04	A : 0.04	u : 0.02	
G : 0.66	g : 0.25	C : 0.04	A : 0.02	U : 0.02	
U : 0.66	u : 0.18	g : 0.06	G : 0.06	C : 0.02	
C : 0.47	G : 0.12	A : 0.10	c : 0.10	g : 0.06	U : 0.04	u : 0.04	a : 0.04	
U : 0.66	u : 0.18	G : 0.04	a : 0.04	A : 0.04	g : 0.02	
G : 0.68	g : 0.25	U : 0.04	C : 0.02	
U : 0.56	u : 0.22	A : 0.14	a : 0.02	G : 0.02	C : 0.02	
G : 0.75	g : 0.25	
G : 0.66	g : 0.22	U : 0.04	u : 0.02	C : 0.02	A : 0.02	

#score	757.0416666666667
#seq	48
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_UTR_m1_run2.nuc.txt

#NT
CGGAAAGGA	chr17:62486922-62487188(-)$1	266	156	165	11.8333
UGGGGAGGC	chr5:175812202-175812526(-)$1	324	60	69	12.2500
gggaaagga	chr12:56563217-56563501(-)$1	284	94	103	12.3333
UGGAGGGGA	chr16:23504628-23504912(-)$1	284	72	81	15.4166
UGGAAAGGA	chr12:56361501-56361771(+)$1	270	246	255	15.2500
UGGAGGAGA	chr14:21548964-21549196(+)$1	232	101	110	11.5833
GGGAGCGGA	chr19:45394496-45394817(+)$1	321	37	46	11.8333
UGGAGGGGA	chr2:38525587-38525859(-)$1	272	147	156	15.4166
UGGAGGGGC	chr2:3622880-3623140(+)$1	260	133	142	12.3333
GGGGGAGGA	chr11:726871-727114(+)$1	243	94	103	12.4166
UGGAGCGGA	chr20:30789924-30790271(-)$1	347	235	244	14.7500
UGGAGAAGA	chr17:27430514-27430764(-)$1	250	113	122	14.6666
UGCAGAGGG	chr17:80193564-80193845(+)$1	281	87	96	11.5000
UGGACAGAA	chr7:86813604-86813920(+)$1	316	113	122	11.0000
UUGAAAGGA	chr6:30584617-30584869(-)$1	252	167	176	10.6666
UGGAGAGAU	chr3:184106271-184106573(+)$1	302	224	233	11.2500
GGGAGACGA	chr5:179321284-179321591(-)$1	307	15	24	11.4166
UGGCCAGGA	chr16:2578355-2578591(+)$1	236	41	50	11.5833
GGGAGAUGA	chr19:45417984-45418250(+)$1	266	63	72	11.5833
AGGAGAGGA	chr14:21679375-21679626(-)$1	251	199	208	15.1666
GGGAGAGGG	chr17:4579948-4580184(-)$1	236	151	160	12.5000
UGCCGAGGA	chr6:117868943-117869235(+)$1	292	202	211	11.0833
UGGAGAGGA	chr17:4620811-4621135(+)$1	324	21	30	18.5000
ugGGCAGGA	chr1:161192742-161192958(-)$1	216	111	120	11.9166
CAGAGAGGA	chr16:72146208-72146434(+)$1	226	202	211	10.4166
AGCAGAGGA	chr17:38191438-38191706(-)$1	268	116	125	11.2500
UGAAGAGGG	chr2:86710942-86711243(+)$1	301	92	101	11.5833
UGGACAAGA	chr16:57792640-57792906(-)$1	266	51	60	11.2500
GGGAGAGGU	chr14:24657321-24657565(-)$1	244	9	18	12.4166
UGAAGAGGA	chr16:24965876-24966175(-)$1	299	172	181	14.6666
UGCAGAGGA	chr14:24656881-24657118(-)$1	237	65	74	14.5833
UGGGAAGGA	chr2:128047707-128047987(-)$1	280	259	268	12.0833
UGGUGGGGA	chr19:12790848-12791116(-)$1	268	140	149	12.0833
UGGGGAGGA	chr11:67821385-67821681(-)$1	296	230	239	15.3333
GGGAGAGGU	chr8:125580640-125580912(-)$1	272	134	143	12.4166
UGGUGAAGA	chr19:12885277-12885582(-)$1	305	132	141	11.3333
UGGAUGGGA	chr16:56970489-56970761(+)$1	272	219	228	11.7500
AGAAGAGGA	chr11:93469179-93469436(-)$1	257	22	31	11.3333
UGGAGAGGG	chr12:104341359-104341593(+)$1	234	109	118	15.4166
gggagagga	chr19:19115019-19115317(-)$1	298	117	126	15.5833
UGGAGAGGU	chr17:40123722-40124010(+)$1	288	72	81	15.3333
UGGUGAGGC	chr6:158449938-158450218(+)$1	280	118	127	12.0833
UGGUGAGGU	chr11:65293470-65293720(+)$1	250	42	51	12.0000
CGGUGAGGA	chr16:84215089-84215360(-)$1	271	29	38	11.7500
UGGAGGAGA	chr11:18028127-18028397(-)$1	270	105	114	11.5833
UGGGGAUGA	chr11:118923386-118923637(-)$1	251	18	27	11.3333
ugaaGGGGA	chr6:33231163-33231417(-)$1	254	23	32	11.5833
UGGGGAGAA	chr9:134351740-134351988(+)$1	248	95	104	11.2500
UGGAGAGUA	chr17:65715666-65715927(+)$1	261	206	215	14.0833
UGGAUAGGC	chr16:84216583-84216832(-)$1	249	178	187	11.7500
UGGAGAGGG	chr4:10117715-10118010(-)$1	295	179	188	15.4166
AGGAGGGGA	chr19:18530175-18530415(+)$1	240	17	26	12.0833
UGGAGAGAA	chr8:134266643-134266887(-)$1	244	188	197	14.4166
UGGAAAGGG	chr12:122995555-122995833(-)$1	278	100	109	12.1666
UUGAGAGGC	chr17:4903340-4903645(+)$1	305	54	63	10.8333
UGGAAAGGA	chr12:57917650-57917956(+)$1	306	1	10	15.2500
UGAAGAUGA	chr3:142761845-142762071(+)$1	226	128	137	10.6666
UGGACUGGA	chr17:73236643-73236941(-)$1	298	282	291	11.2500
UGGCGAGAA	chr2:101619009-101619282(+)$1	273	174	183	10.9166

#otherMatches

#Struct PSSM
:::::FFFF	chr15:75658784-75659032(-)$1	248	11	20	12.3333
]========	chr17:62486922-62487188(-)$1	266	156	165	11.8333
::GGGGGGG	chr5:175812202-175812526(-)$1	324	60	69	12.2500
DDDD{BBCC	chr12:56563217-56563501(-)$1	284	94	103	12.3333
ccc:hhhhh	chr16:23504628-23504912(-)$1	284	72	81	15.4166
YAFFFFFFY	chr12:56361501-56361771(+)$1	270	246	255	15.2500
e[a''''''	chr14:21548964-21549196(+)$1	232	101	110	11.5833
GGKKDDDDK	chr19:45394496-45394817(+)$1	321	37	46	11.8333
dddd]bb:D	chr2:38525587-38525859(-)$1	272	147	156	15.4166
b55555ccc	chr2:3622880-3623140(+)$1	260	133	142	12.3333
=========	chr11:726871-727114(+)$1	243	94	103	12.4166
ddd$$$$$d	chr20:30789924-30790271(-)$1	347	235	244	14.7500
qa]a4444g	chr17:27430514-27430764(-)$1	250	113	122	14.6666
####eeeee	chr17:80193564-80193845(+)$1	281	87	96	11.5000
h]a]dddd:	chr7:86813604-86813920(+)$1	316	113	122	11.0000
ee"""bbmm	chr6:30584617-30584869(-)$1	252	167	176	10.6666
dd[bb[a[c	chr3:184106271-184106573(+)$1	302	224	233	11.2500
dd:::::::	chr5:179321284-179321591(-)$1	307	15	24	11.4166
iiiiiii[b	chr16:2578355-2578591(+)$1	236	41	50	11.5833
:::::::ff	chr19:45417984-45418250(+)$1	266	63	72	11.5833
66ffffff2	chr14:21679375-21679626(-)$1	251	199	208	15.1666
==[ffffff	chr17:4579948-4580184(-)$1	236	151	160	12.5000
dddddddd:	chr6:117868943-117869235(+)$1	292	202	211	11.0833
EEEEE{BB:	chr17:4620811-4621135(+)$1	324	21	30	18.5000
$ddddmmmm	chr1:161192742-161192958(-)$1	216	111	120	11.9166
ppppppggg	chr16:72146208-72146434(+)$1	226	202	211	10.4166
3dddd]ccc	chr17:38191438-38191706(-)$1	268	116	125	11.2500
aooooooa]	chr2:86710942-86711243(+)$1	301	92	101	11.5833
]bb:::bb[	chr16:57792640-57792906(-)$1	266	51	60	11.2500
JJJJJJJJJ	chr14:24657321-24657565(-)$1	244	9	18	12.4166
BB}DDDD}C	chr16:24965876-24966175(-)$1	299	172	181	14.6666
]ccc]ccc:	chr14:24656881-24657118(-)$1	237	65	74	14.5833
FFFFFZZZE	chr2:128047707-128047987(-)$1	280	259	268	12.0833
]eeeee]bb	chr19:12790848-12791116(-)$1	268	140	149	12.0833
[bbcccbbl	chr11:67821385-67821681(-)$1	296	230	239	15.3333
:ffffff%%	chr8:125580640-125580912(-)$1	272	134	143	12.4166
eeee[annn	chr19:12885277-12885582(-)$1	305	132	141	11.3333
oooooeeee	chr16:56970489-56970761(+)$1	272	219	228	11.7500
ppppccc22	chr11:93469179-93469436(-)$1	257	22	31	11.3333
ddd]eeeee	chr12:104341359-104341593(+)$1	234	109	118	15.4166
fffqqqqqq	chr19:19115019-19115317(-)$1	298	117	126	15.5833
FFFFFGGGG	chr17:40123722-40124010(+)$1	288	72	81	15.3333
[bb[ggggg	chr6:158449938-158450218(+)$1	280	118	127	12.0833
b[ccc[ggg	chr11:65293470-65293720(+)$1	250	42	51	12.0000
{BB{A{III	chr16:84215089-84215360(-)$1	271	29	38	11.7500
]hhhhhhhh	chr11:18028127-18028397(-)$1	270	105	114	11.5833
HHHHRRRRR	chr11:118923386-118923637(-)$1	251	18	27	11.3333
::::eeeee	chr6:33231163-33231417(-)$1	254	23	32	11.5833
eeehhhhhh	chr9:134351740-134351988(+)$1	248	95	104	11.2500
cmmmmccc]	chr17:65715666-65715927(+)$1	261	206	215	14.0833
dddd22ccc	chr16:84216583-84216832(-)$1	249	178	187	11.7500
ffffEEEEE	chr4:10117715-10118010(-)$1	295	179	188	15.4166
!bb!!bb[d	chr19:18530175-18530415(+)$1	240	17	26	12.0833
GGGGDDDD@	chr8:134266643-134266887(-)$1	244	188	197	14.4166
E{HHHHHHH	chr12:122995555-122995833(-)$1	278	100	109	12.1666
hhhhhhh:D	chr17:4903340-4903645(+)$1	305	54	63	10.8333
:ccc$$$$$	chr12:57917650-57917956(+)$1	306	1	10	15.2500
dd:CCC{CC	chr3:142761845-142762071(+)$1	226	128	137	10.6666
::::::ccc	chr17:73236643-73236941(-)$1	298	282	291	11.2500
ffff[dddd	chr2:101619009-101619282(+)$1	273	174	183	10.9166

#DB
.....((((	chr15:75658784-75659032(-)$1	1	11	20	12.3333
.))))))))	chr17:62486922-62487188(-)$1	1	156	165	11.8333
..(((((((	chr5:175812202-175812526(-)$1	1	60	69	12.2500
((((.((((	chr12:56563217-56563501(-)$1	1	94	103	12.3333
))).(((((	chr16:23504628-23504912(-)$1	1	72	81	15.4166
.))))))).	chr12:56361501-56361771(+)$1	1	246	255	15.2500
(.(......	chr14:21548964-21549196(+)$1	1	101	110	11.5833
((..((((.	chr19:45394496-45394817(+)$1	1	37	46	11.8333
)))).)).)	chr2:38525587-38525859(-)$1	1	147	156	15.4166
).....)))	chr2:3622880-3623140(+)$1	1	133	142	12.3333
)))))))))	chr11:726871-727114(+)$1	1	94	103	12.4166
(((.....(	chr20:30789924-30790271(-)$1	1	235	244	14.7500
.).)....)	chr17:27430514-27430764(-)$1	1	113	122	14.6666
....(((((	chr17:80193564-80193845(+)$1	1	87	96	11.5000
).).)))).	chr7:86813604-86813920(+)$1	1	113	122	11.0000
((...((..	chr6:30584617-30584869(-)$1	1	167	176	10.6666
((.((.(.(	chr3:184106271-184106573(+)$1	1	224	233	11.2500
)).......	chr5:179321284-179321591(-)$1	1	15	24	11.4166
(((((((.(	chr16:2578355-2578591(+)$1	1	41	50	11.5833
.......((	chr19:45417984-45418250(+)$1	1	63	72	11.5833
..)))))).	chr14:21679375-21679626(-)$1	1	199	208	15.1666
((.((((((	chr17:4579948-4580184(-)$1	1	151	160	12.5000
)))))))).	chr6:117868943-117869235(+)$1	1	202	211	11.0833
(((((.((.	chr17:4620811-4621135(+)$1	1	21	30	18.5000
.((((....	chr1:161192742-161192958(-)$1	1	111	120	11.9166
......)))	chr16:72146208-72146434(+)$1	1	202	211	10.4166
.)))).)))	chr17:38191438-38191706(-)$1	1	116	125	11.2500
(......).	chr2:86710942-86711243(+)$1	1	92	101	11.5833
.))...((.	chr16:57792640-57792906(-)$1	1	51	60	11.2500
(((((((((	chr14:24657321-24657565(-)$1	1	9	18	12.4166
)).)))).)	chr16:24965876-24966175(-)$1	1	172	181	14.6666
.))).))).	chr14:24656881-24657118(-)$1	1	65	74	14.5833
)))))...)	chr2:128047707-128047987(-)$1	1	259	268	12.0833
.))))).))	chr19:12790848-12791116(-)$1	1	140	149	12.0833
.(((((((.	chr11:67821385-67821681(-)$1	1	230	239	15.3333
.((((((..	chr8:125580640-125580912(-)$1	1	134	143	12.4166
((((.(...	chr19:12885277-12885582(-)$1	1	132	141	11.3333
.....))))	chr16:56970489-56970761(+)$1	1	219	228	11.7500
....)))..	chr11:93469179-93469436(-)$1	1	22	31	11.3333
))).)))))	chr12:104341359-104341593(+)$1	1	109	118	15.4166
(((......	chr19:19115019-19115317(-)$1	1	117	126	15.5833
(((((((((	chr17:40123722-40124010(+)$1	1	72	81	15.3333
.((.(((((	chr6:158449938-158450218(+)$1	1	118	127	12.0833
(.(((.(((	chr11:65293470-65293720(+)$1	1	42	51	12.0000
.((.(.(((	chr16:84215089-84215360(-)$1	1	29	38	11.7500
.))))))))	chr11:18028127-18028397(-)$1	1	105	114	11.5833
((((.....	chr11:118923386-118923637(-)$1	1	18	27	11.3333
....(((((	chr6:33231163-33231417(-)$1	1	23	32	11.5833
)))))))))	chr9:134351740-134351988(+)$1	1	95	104	11.2500
(....))).	chr17:65715666-65715927(+)$1	1	206	215	14.0833
))))..)))	chr16:84216583-84216832(-)$1	1	178	187	11.7500
)))))))))	chr4:10117715-10118010(-)$1	1	179	188	15.4166
.((..((.(	chr19:18530175-18530415(+)$1	1	17	26	12.0833
)))))))).	chr8:134266643-134266887(-)$1	1	188	197	14.4166
(.(((((((	chr12:122995555-122995833(-)$1	1	100	109	12.1666
))))))).(	chr17:4903340-4903645(+)$1	1	54	63	10.8333
.(((.....	chr12:57917650-57917956(+)$1	1	1	10	15.2500
)).(((.((	chr3:142761845-142762071(+)$1	1	128	137	10.6666
......(((	chr17:73236643-73236941(-)$1	1	282	291	11.2500
((((.((((	chr2:101619009-101619282(+)$1	1	174	183	10.9166

#PSSM
U : 0.70	G : 0.11	A : 0.06	C : 0.05	g : 0.03	u : 0.03	
G : 0.88	g : 0.06	U : 0.03	A : 0.01	
G : 0.81	C : 0.06	A : 0.06	g : 0.03	a : 0.01	
A : 0.70	G : 0.11	U : 0.08	a : 0.05	C : 0.05	
G : 0.75	A : 0.09	C : 0.08	U : 0.03	a : 0.01	g : 0.01	
A : 0.75	G : 0.16	a : 0.03	C : 0.03	U : 0.01	
G : 0.81	A : 0.08	U : 0.05	g : 0.03	C : 0.01	
G : 0.86	A : 0.08	g : 0.03	U : 0.01	
A : 0.68	C : 0.09	G : 0.09	U : 0.08	a : 0.03	

#score	759.8333333333345
#seq	60
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_UTR_m2_run1.nuc.txt

#NT
GGAGGGGGAUGG	chr3:53263195-53263406(-)$1	211	171	183	15.8000
GGUAGGUGCUGG	chr3:53264390-53264627(-)$1	237	154	166	13.8000
UGUGGGGGCCCC	chr2:96950851-96951103(-)$1	252	62	74	11.6000
GGGGGGGACUAG	chr17:48459665-48459945(-)$1	280	14	26	11.7000
GGUUGGGACAGG	chr7:150813779-150814033(+)$1	254	42	54	13.3000
GGUGGGGUUGGG	chr11:1773938-1774197(-)$1	259	88	100	13.7000
GGAGGGCGACGG	chr17:75316211-75316471(+)$1	260	114	126	14.7000
GGCGGGGGCAGG	chr9:134372480-134372706(+)$1	226	103	115	18.7000
GGUGGGCGGGGG	chr19:3053925-3054135(-)$1	210	39	51	15.2000
GCUGGGGGCCCU	chrX:153580502-153580721(-)$1	219	130	142	11.3000
GGUGGGGGCCGG	chr7:1036948-1037253(-)$1	305	67	79	22.8000
ggcgggggccgg	chr2:159313539-159313772(+)$1	233	48	60	20.6000
GGUGGGCCCAGG	chr15:91425246-91425473(+)$1	227	22	34	14.1000
AGUGGGGGGCGG	chr16:2222397-2222655(+)$1	258	206	218	15.8000
ggcgcggcccgg	chr8:145515327-145515582(+)$1	255	17	29	12.7000
GGUGGGGAGGGG	chr17:33463919-33464173(-)$1	254	83	95	14.3000
GGAGGGGGAAGG	chr1:201104419-201104678(-)$1	259	119	131	15.7000
GGUGUGGGCCGA	chr6:33243510-33243740(+)$1	230	63	75	14.8000
GGUGGGUGCUGC	chrX:153590587-153590799(-)$1	212	13	25	14.4000
GGUUGGGGGGGG	chr19:34859390-34859630(+)$1	240	55	67	14.3000
AGUGGGAGCCAG	chr12:120636304-120636528(-)$1	224	18	30	11.8000
GCUGGGCGCCAG	chr19:49119235-49119494(-)$1	259	242	254	12.7000
GGUgcgggccgg	chr19:13056622-13056878(+)$1	256	211	223	18.8000
UGUGGUGGCUGG	chr8:146015750-146015954(-)$1	204	100	112	12.3000
GGUgcgggcggg	chr19:34856111-34856330(+)$1	219	181	193	16.7000
GCUCGGGGUCGG	chr16:2014235-2014466(-)$1	231	32	44	12.0000
GGAAGGGGCCGG	chr12:124809545-124809783(-)$1	238	86	98	17.0000
GGGGGGAGCCAG	chr1:43392575-43392842(-)$1	267	58	70	13.9000
GGCGGGGGUGGG	chr17:80012477-80012789(+)$1	312	226	238	15.6000
GGGGCGGGCCAG	chr16:70415087-70415369(-)$1	282	41	53	13.3000
GCAGGUGGCCGG	chr16:89627928-89628209(+)$1	281	53	65	12.4000
GCUGGGGGCCGG	chr7:98983224-98983501(+)$1	277	187	199	18.8000
GGUGGGGAUCGG	chr19:6361777-6362039(+)$1	262	49	61	16.1000
GGUGAGCGCCGC	chr19:12911915-12912183(-)$1	268	210	222	12.5000
GGUGGCGGGCAG	chr22:22277088-22277335(-)$1	247	54	66	12.6000
GGCGGGGGGAGC	chr16:84600256-84600521(-)$1	265	34	46	13.0000
GGGGGGGCCCUG	chr19:1220496-1220817(+)$1	321	22	34	12.9000
GGCGGGGGCCGC	chr16:279042-279342(-)$1	300	133	145	17.5000
GGGGGGCGCCGC	chr19:3061143-3061356(-)$1	213	3	15	14.5000
GGUGGGAGCCAG	chr3:53269026-53269286(-)$1	260	37	49	16.2000
GGGUGGCGCUGG	chr19:42373008-42373275(+)$1	267	120	132	12.0000
GGUAGGGGCCGA	chr16:67978380-67978646(-)$1	266	165	177	15.4000
GGUGGGGGGAGG	chr6:31749765-31749991(-)$1	226	193	205	18.3000
ggccggcgccgg	chr12:133067012-133067268(+)$1	256	195	207	13.8000
GGAGGGGGCAGC	chr4:1205714-1205959(-)$1	245	61	73	15.7000
GGAGGGGGCUGC	chr16:2013051-2013257(-)$1	206	123	135	15.8000
GGUAGAGGCUGG	chr1:228681658-228681999(+)$1	341	123	135	13.0000
GGAGGGGGCAGG	chr1:27731737-27732003(-)$1	266	216	228	18.8000
GGUGGGGGUUGG	chr7:4804117-4804364(+)$1	247	81	93	18.1000

#otherMatches

#Struct PSSM
BYYFFFFFFA}B	chr1:22175330-22175556(-)$1	226	197	209	12.2000
eeeeGGGGGGGE	chr3:53263195-53263406(-)$1	211	171	183	15.8000
ccc[bb!!ccc"	chr3:53264390-53264627(-)$1	237	154	166	13.8000
eee[ffffff[c	chr2:96950851-96951103(-)$1	252	62	74	11.6000
cGGGGGGGKKDD	chr17:48459665-48459945(-)$1	280	14	26	11.7000
pppppppbb]a]	chr7:150813779-150814033(+)$1	254	42	54	13.3000
fff[bb[a!!cc	chr11:1773938-1774197(-)$1	259	88	100	13.7000
bb!!dddd[ggg	chr17:75316211-75316471(+)$1	260	114	126	14.7000
fff]cccbb22b	chr9:134372480-134372706(+)$1	226	103	115	18.7000
gg[ccc[hhhhh	chr19:3053925-3054135(-)$1	210	39	51	15.2000
ffffeeeeeccc	chrX:153580502-153580721(-)$1	219	130	142	11.3000
pppppppeeeee	chr7:1036948-1037253(-)$1	305	67	79	22.8000
JJGGGGGGGEEE	chr2:159313539-159313772(+)$1	233	48	60	20.6000
=========:DD	chr15:91425246-91425473(+)$1	227	22	34	14.1000
JJJJJJJJJJJJ	chr16:2222397-2222655(+)$1	258	206	218	15.8000
BB{FFFFFFDDD	chr8:145515327-145515582(+)$1	255	17	29	12.7000
========::dd	chr17:33463919-33464173(-)$1	254	83	95	14.3000
========]ccc	chr1:201104419-201104678(-)$1	259	119	131	15.7000
dddd[bb!!a&&	chr6:33243510-33243740(+)$1	230	63	75	14.8000
{A{GGGGGGGcc	chrX:153590587-153590799(-)$1	212	13	25	14.4000
ggccc[bb[ccc	chr19:34859390-34859630(+)$1	240	55	67	14.3000
BB{EEEEE:eee	chr12:120636304-120636528(-)$1	224	18	30	11.8000
CCC}DDDD}HHH	chr19:49119235-49119494(-)$1	259	242	254	12.7000
fff333ccceee	chr19:13056622-13056878(+)$1	256	211	223	18.8000
Bffffffccc[a	chr8:146015750-146015954(-)$1	204	100	112	12.3000
DDDD}BBGGGGG	chr19:34856111-34856330(+)$1	219	181	193	16.7000
]ccceeeeelll	chr16:2014235-2014466(-)$1	231	32	44	12.0000
DDKKEEEEE{BB	chr12:124809545-124809783(-)$1	238	86	98	17.0000
ffffeeeee[cc	chr1:43392575-43392842(-)$1	267	58	70	13.9000
fffBB}A}CCCD	chr17:80012477-80012789(+)$1	312	226	238	15.6000
:ffffff[ammm	chr16:70415087-70415369(-)$1	282	41	53	13.3000
EE:eeeeedddd	chr16:89627928-89628209(+)$1	281	53	65	12.4000
dIIIIIIIIIOO	chr7:98983224-98983501(+)$1	277	187	199	18.8000
hhhhhhh"""ff	chr19:6361777-6362039(+)$1	262	49	61	16.1000
D}DDDDA}HHHH	chr19:12911915-12912183(-)$1	268	210	222	12.5000
d]dddddddd[e	chr22:22277088-22277335(-)$1	247	54	66	12.6000
hhhhhhhh!!a#	chr16:84600256-84600521(-)$1	265	34	46	13.0000
HHHHHHHHLLLG	chr19:1220496-1220817(+)$1	321	22	34	12.9000
eeee[ddddppp	chr16:279042-279342(-)$1	300	133	145	17.5000
gggggcccdddd	chr19:3061143-3061356(-)$1	213	3	15	14.5000
B{DDDD{BBLLL	chr3:53269026-53269286(-)$1	260	37	49	16.2000
ddbb]ffffffb	chr19:42373008-42373275(+)$1	267	120	132	12.0000
dddddddddd]a	chr16:67978380-67978646(-)$1	266	165	177	15.4000
nnnbbIIIIIII	chr6:31749765-31749991(-)$1	226	193	205	18.3000
CC}EEEEE}DDD	chr12:133067012-133067268(+)$1	256	195	207	13.8000
f[a[eeeeeqqq	chr4:1205714-1205959(-)$1	245	61	73	15.7000
mmmmeeeeeHHH	chr16:2013051-2013257(-)$1	206	123	135	15.8000
5eeeee333===	chr1:228681658-228681999(+)$1	341	123	135	13.0000
]bbIIIIIIIII	chr1:27731737-27732003(-)$1	266	216	228	18.8000
GG{BB{CCC{A{	chr7:4804117-4804364(+)$1	247	81	93	18.1000

#DB
)..))))))).)	chr1:22175330-22175556(-)$1	1	197	209	12.2000
))))))))))))	chr3:53263195-53263406(-)$1	1	171	183	15.8000
(((.((..(((.	chr3:53264390-53264627(-)$1	1	154	166	13.8000
(((.((((((.(	chr2:96950851-96951103(-)$1	1	62	74	11.6000
)(((((((..((	chr17:48459665-48459945(-)$1	1	14	26	11.7000
.......)).).	chr7:150813779-150814033(+)$1	1	42	54	13.3000
(((.((.(..((	chr11:1773938-1774197(-)$1	1	88	100	13.7000
((..((((.(((	chr17:75316211-75316471(+)$1	1	114	126	14.7000
))).)))))..)	chr9:134372480-134372706(+)$1	1	103	115	18.7000
((.(((.(((((	chr19:3053925-3054135(-)$1	1	39	51	15.2000
))))))))))))	chrX:153580502-153580721(-)$1	1	130	142	11.3000
.......)))))	chr7:1036948-1037253(-)$1	1	67	79	22.8000
((((((((((((	chr2:159313539-159313772(+)$1	1	48	60	20.6000
))))))))).((	chr15:91425246-91425473(+)$1	1	22	34	14.1000
))))))))))))	chr16:2222397-2222655(+)$1	1	206	218	15.8000
((.(((((((((	chr8:145515327-145515582(+)$1	1	17	29	12.7000
))))))))..((	chr17:33463919-33464173(-)$1	1	83	95	14.3000
)))))))).)))	chr1:201104419-201104678(-)$1	1	119	131	15.7000
((((.((..(..	chr6:33243510-33243740(+)$1	1	63	75	14.8000
.(.(((((((((	chrX:153590587-153590799(-)$1	1	13	25	14.4000
(((((.((.(((	chr19:34859390-34859630(+)$1	1	55	67	14.3000
((.(((((.(((	chr12:120636304-120636528(-)$1	1	18	30	11.8000
))).)))).)))	chr19:49119235-49119494(-)$1	1	242	254	12.7000
)))...)))(((	chr19:13056622-13056878(+)$1	1	211	223	18.8000
((((((((((.(	chr8:146015750-146015954(-)$1	1	100	112	12.3000
)))).)))))))	chr19:34856111-34856330(+)$1	1	181	193	16.7000
.)))(((((...	chr16:2014235-2014466(-)$1	1	32	44	12.0000
((..(((((.((	chr12:124809545-124809783(-)$1	1	86	98	17.0000
(((((((((.((	chr1:43392575-43392842(-)$1	1	58	70	13.9000
))))).).))))	chr17:80012477-80012789(+)$1	1	226	238	15.6000
.((((((.(...	chr16:70415087-70415369(-)$1	1	41	53	13.3000
((.(((((((((	chr16:89627928-89628209(+)$1	1	53	65	12.4000
)(((((((((..	chr7:98983224-98983501(+)$1	1	187	199	18.8000
(((((((...((	chr19:6361777-6362039(+)$1	1	49	61	16.1000
).))))).))))	chr19:12911915-12912183(-)$1	1	210	222	12.5000
).))))((((.(	chr22:22277088-22277335(-)$1	1	54	66	12.6000
((((((((..(.	chr16:84600256-84600521(-)$1	1	34	46	13.0000
((((((((...(	chr19:1220496-1220817(+)$1	1	22	34	12.9000
((((.((((...	chr16:279042-279342(-)$1	1	133	145	17.5000
((((((((((((	chr19:3061143-3061356(-)$1	1	3	15	14.5000
(.((((.((...	chr3:53269026-53269286(-)$1	1	37	49	16.2000
)))).)))))))	chr19:42373008-42373275(+)$1	1	120	132	12.0000
)))))))))).)	chr16:67978380-67978646(-)$1	1	165	177	15.4000
...)))))))))	chr6:31749765-31749991(-)$1	1	193	205	18.3000
)).))))).)))	chr12:133067012-133067268(+)$1	1	195	207	13.8000
(.(.(((((...	chr4:1205714-1205959(-)$1	1	61	73	15.7000
....))))))))	chr16:2013051-2013257(-)$1	1	123	135	15.8000
.)))))...)))	chr1:228681658-228681999(+)$1	1	123	135	13.0000
.)))))))))))	chr1:27731737-27732003(-)$1	1	216	228	18.8000
((.((.(((.(.	chr7:4804117-4804364(+)$1	1	81	93	18.1000

#PSSM
G : 0.86	g : 0.06	U : 0.04	A : 0.04	
G : 0.84	C : 0.10	g : 0.06	
U : 0.58	A : 0.16	G : 0.12	C : 0.08	c : 0.06	
G : 0.74	A : 0.08	g : 0.08	U : 0.06	C : 0.02	c : 0.02	
G : 0.84	c : 0.06	g : 0.04	U : 0.02	C : 0.02	A : 0.02	
G : 0.80	g : 0.10	A : 0.04	U : 0.04	C : 0.02	
G : 0.66	C : 0.14	g : 0.08	A : 0.06	U : 0.04	c : 0.02	
G : 0.76	A : 0.08	g : 0.08	C : 0.04	U : 0.02	c : 0.02	
C : 0.58	G : 0.16	U : 0.10	c : 0.10	A : 0.06	
C : 0.46	U : 0.18	A : 0.16	G : 0.10	c : 0.08	g : 0.02	
G : 0.68	A : 0.14	g : 0.10	U : 0.04	C : 0.04	
G : 0.68	C : 0.16	g : 0.10	A : 0.04	U : 0.02	

#score	743.000000000001
#seq	50
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_CDS_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
FFFFFF{CCC{GGGGGGGLLLEEEEE:FFFFFFDDDD{A:cccmmmmcccDDDD{BBEEEEE{JJJJJJJJJJIIIIIIIIIffffffrrrrrrrrrffffff:::cccnnnnnccc:::::::::::::IIIIIIIII?????JJJJJJJJJJEEEEEYYBB}DDDD:::::ffffffqqqqqqqqffffff::::::::A}DDDD}FFFFFF::::::ffffffmmmmffffff::EEEEEGGGGGGGYYCCC}F	chr11:66391338-66391604(+)$1	266	3	260	771.0000

#DB
((((((.(((.(((((((...(((((.((((((((((.(.(((....)))((((.(((((((.(((((((((((((((((((((((((.........))))))...(((.....))).............))))))))).....)))))))))))))))..)).)))).....((((((........))))))........).)))).))))))......((((((....))))))..))))))))))))..))).)	chr11:66391338-66391604(+)$1	1	3	260	771.0000

#PSSM
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	

#score	771.0
#seq	1
#width	257
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_transcript_m3_run1.nuc.txt

#NT
CUUU	chr6:74228884-74229132(-)$1	248	39	43	11.9999
CUUU	chr3:185641381-185641663(-)$1	282	43	47	11.9999
CUUU	chr12:123060377-123060658(+)$1	281	15	19	11.9999
CUUU	chr13:28844931-28845214(+)$1	283	97	101	11.9999
CUUU	chr18:2700586-2700867(+)$1	281	114	118	11.9999
CUUU	chr12:9907008-9907249(-)$1	241	85	89	11.9999
CUUU	chr5:78915839-78916089(+)$1	250	245	249	11.9999
CUUU	chr11:93467593-93467860(-)$1	267	19	23	11.9999
CUUU	chr5:167922356-167922638(+)$1	282	55	59	11.9999
cuuu	chr12:112845844-112846115(-)$1	271	261	265	11.9999
CUUU	chr20:34294876-34295118(-)$1	242	1	5	11.9999
CUUU	chr12:133248587-133248844(-)$1	257	34	38	11.9999
CUUU	chr1:22021346-22021632(-)$1	286	118	122	11.9999
CUUU	chr1:224581348-224581602(-)$1	254	46	50	11.9999
CUUU	chr14:103934448-103934707(+)$1	259	173	177	11.9999
CUUU	chr8:86129440-86129687(-)$1	247	24	28	11.9999
CUUU	chr1:156305429-156305687(-)$1	258	79	83	11.9999
CUUU	chr1:173835523-173835736(-)$1	213	99	103	11.9999
CUUU	chr20:48258823-48259080(-)$1	257	86	90	11.9999
CUUU	chr4:79766129-79766384(+)$1	255	86	90	11.9999
CUUU	chr16:81703805-81704023(+)$1	218	86	90	11.9999
CUUU	chr5:134113344-134113626(+)$1	282	156	160	11.9999
CUUU	chr16:70566444-70566726(+)$1	282	46	50	11.9999
CUUU	chr2:61749563-61749814(-)$1	251	157	161	11.9999
CUUU	chr20:45985188-45985477(-)$1	289	87	91	11.9999
CUUU	chr5:40835084-40835361(-)$1	277	47	51	11.9999
CUUU	chr8:56986412-56986662(-)$1	250	97	101	11.9999
CUUU	chr11:85714212-85714470(-)$1	258	72	76	11.9999
CUUU	chr5:131039543-131039829(-)$1	286	8	12	11.9999
CUUU	chr16:31201649-31201908(+)$1	259	115	119	11.9999
CUUU	chr1:67885462-67885760(-)$1	298	171	175	11.9999
CUUU	chr3:167413207-167413454(-)$1	247	97	101	11.9999
CUUU	chr4:2502396-2502650(+)$1	254	22	26	11.9999
CUUU	chr7:121002763-121003021(-)$1	258	13	17	11.9999
CUUU	chr22:20112891-20113134(+)$1	243	153	157	11.9999
CUUU	chr4:79786780-79787072(+)$1	292	144	148	11.9999
CUUU	chr5:40834366-40834642(-)$1	276	102	106	11.9999
CUUU	chr1:23647835-23648093(-)$1	258	3	7	11.9999
CUUU	chr2:101910298-101910546(-)$1	248	91	95	11.9999
CUUU	chr6:160210257-160210509(-)$1	252	19	23	11.9999
CUUU	chr6:99848196-99848497(-)$1	301	86	90	11.9999
CUUU	chr19:13050373-13050615(+)$1	242	138	142	11.9999
CUUU	chr10:62547917-62548179(+)$1	262	36	40	11.9999
CUUU	chr4:39459014-39459277(-)$1	263	128	132	11.9999
CUUU	chr5:158630220-158630516(-)$1	296	32	36	11.9999
CUUU	chr1:22408213-22408486(+)$1	273	58	62	11.9999
CUUU	chr6:160448274-160448566(+)$1	292	126	130	11.9999
CUUU	chr5:154183237-154183494(+)$1	257	126	130	11.9999
CUUU	chr18:47016969-47017226(-)$1	257	2	6	11.9999
CUUU	chr1:31531862-31532125(-)$1	263	99	103	11.9999
Cuuu	chr19:11218114-11218384(+)$1	270	190	194	11.9999
CUUU	chr10:76982092-76982348(+)$1	256	75	79	11.9999
CUUU	chr6:53160264-53160502(-)$1	238	182	186	11.9999
CUUU	chr2:177162549-177162795(+)$1	246	41	45	11.9999
CUUU	chr6:31602273-31602521(+)$1	248	35	39	11.9999
CUUU	chr9:131453436-131453694(+)$1	258	1	5	11.9999
CUUU	chr9:136233289-136233544(-)$1	255	48	52	11.9999
CUUU	chr3:122101823-122102084(-)$1	261	101	105	11.9999
CUUU	chr3:180949472-180949681(+)$1	209	3	7	11.9999
CUUU	chr2:152308147-152308417(+)$1	270	92	96	11.9999
CUUU	chr12:54676588-54676852(+)$1	264	117	121	11.9999
CUUU	chr8:61178298-61178553(-)$1	255	56	60	11.9999
CUUU	chr1:93299146-93299422(+)$1	276	95	99	11.9999
CUUU	chr20:32211031-32211279(+)$1	248	84	88	11.9999
cuuu	chr1:119689619-119689908(+)$1	289	151	155	11.9999
cuuu	chr1:35642746-35642993(-)$1	247	194	198	11.9999
CUUU	chr5:38958357-38958614(-)$1	257	113	117	11.9999
CUUU	chr1:11083311-11083571(+)$1	260	24	28	11.9999
cuuu	chr2:15644072-15644350(-)$1	278	139	143	11.9999
CUUU	chr2:219093513-219093763(+)$1	250	16	20	11.9999
CUUU	chr11:47753465-47753744(-)$1	279	93	97	11.9999
CUUU	chr5:43297908-43298183(-)$1	275	55	59	11.9999
CUUU	chr7:150023032-150023241(+)$1	209	184	188	11.9999
CUUU	chr7:75070051-75070302(-)$1	251	192	196	11.9999
CUUU	chr9:86586607-86586869(-)$1	262	166	170	11.9999
CUUU	chr3:40351395-40351651(+)$1	256	62	66	11.9999
CUUU	chr2:61753369-61753629(-)$1	260	108	112	11.9999
CUUU	chr11:93469676-93469921(-)$1	245	159	163	11.9999
CUUU	chr12:67686485-67686800(+)$1	315	101	105	11.9999
CUUU	chr6:31597041-31597301(+)$1	260	102	106	11.9999
CUUU	chr3:196229549-196229806(-)$1	257	105	109	11.9999
CUUU	chr7:152357571-152357838(-)$1	267	67	71	11.9999
CUUU	chr1:85724005-85724280(-)$1	275	192	196	11.9999
CUUU	chr2:113405244-113405507(+)$1	263	11	15	11.9999
CUUU	chr6:158327169-158327429(+)$1	260	98	102	11.9999
CUUU	chr12:46758241-46758496(-)$1	255	34	38	11.9999

#otherMatches

#Struct PSSM
dddd	chr1:11076992-11077242(+)$1	250	47	51	11.9999
C:::	chr6:74228884-74229132(-)$1	248	39	43	11.9999
dd::	chr3:185641381-185641663(-)$1	282	43	47	11.9999
ffff	chr12:123060377-123060658(+)$1	281	15	19	11.9999
%%==	chr13:28844931-28845214(+)$1	283	97	101	11.9999
gggg	chr18:2700586-2700867(+)$1	281	114	118	11.9999
eeee	chr12:9907008-9907249(-)$1	241	85	89	11.9999
ee::	chr5:78915839-78916089(+)$1	250	245	249	11.9999
gggg	chr11:93467593-93467860(-)$1	267	19	23	11.9999
++++	chr5:167922356-167922638(+)$1	282	55	59	11.9999
EEFF	chr12:112845844-112846115(-)$1	271	261	265	11.9999
ccqq	chr20:34294876-34295118(-)$1	242	1	5	11.9999
EE{C	chr12:133248587-133248844(-)$1	257	34	38	11.9999
5555	chr1:22021346-22021632(-)$1	286	118	122	11.9999
{BBK	chr1:224581348-224581602(-)$1	254	46	50	11.9999
booo	chr14:103934448-103934707(+)$1	259	173	177	11.9999
zzzz	chr8:86129440-86129687(-)$1	247	24	28	11.9999
tttt	chr1:156305429-156305687(-)$1	258	79	83	11.9999
qqqq	chr1:173835523-173835736(-)$1	213	99	103	11.9999
^^^^	chr20:48258823-48259080(-)$1	257	86	90	11.9999
qqqd	chr4:79766129-79766384(+)$1	255	86	90	11.9999
nnee	chr16:81703805-81704023(+)$1	218	86	90	11.9999
blll	chr5:134113344-134113626(+)$1	282	156	160	11.9999
h"""	chr16:70566444-70566726(+)$1	282	46	50	11.9999
gggg	chr2:61749563-61749814(-)$1	251	157	161	11.9999
cc[c	chr20:45985188-45985477(-)$1	289	87	91	11.9999
II{B	chr5:40835084-40835361(-)$1	277	47	51	11.9999
eeee	chr8:56986412-56986662(-)$1	250	97	101	11.9999
hh$$	chr11:85714212-85714470(-)$1	258	72	76	11.9999
qqqq	chr5:131039543-131039829(-)$1	286	8	12	11.9999
eeee	chr16:31201649-31201908(+)$1	259	115	119	11.9999
DDD\	chr1:67885462-67885760(-)$1	298	171	175	11.9999
e^^^	chr3:167413207-167413454(-)$1	247	97	101	11.9999
b$$$	chr4:2502396-2502650(+)$1	254	22	26	11.9999
::::	chr7:121002763-121003021(-)$1	258	13	17	11.9999
eeee	chr22:20112891-20113134(+)$1	243	153	157	11.9999
gggg	chr4:79786780-79787072(+)$1	292	144	148	11.9999
ddd3	chr5:40834366-40834642(-)$1	276	102	106	11.9999
ffff	chr1:23647835-23648093(-)$1	258	3	7	11.9999
eee3	chr2:101910298-101910546(-)$1	248	91	95	11.9999
Fccc	chr6:160210257-160210509(-)$1	252	19	23	11.9999
fffm	chr6:99848196-99848497(-)$1	301	86	90	11.9999
ff::	chr19:13050373-13050615(+)$1	242	138	142	11.9999
::::	chr10:62547917-62548179(+)$1	262	36	40	11.9999
nnnn	chr4:39459014-39459277(-)$1	263	128	132	11.9999
++++	chr5:158630220-158630516(-)$1	296	32	36	11.9999
GGGG	chr1:22408213-22408486(+)$1	273	58	62	11.9999
C:::	chr6:160448274-160448566(+)$1	292	126	130	11.9999
bb]a	chr5:154183237-154183494(+)$1	257	126	130	11.9999
FFFF	chr18:47016969-47017226(-)$1	257	2	6	11.9999
ffff	chr1:31531862-31532125(-)$1	263	99	103	11.9999
hhh>	chr19:11218114-11218384(+)$1	270	190	194	11.9999
bbnn	chr10:76982092-76982348(+)$1	256	75	79	11.9999
ddd:	chr6:53160264-53160502(-)$1	238	182	186	11.9999
e"""	chr2:177162549-177162795(+)$1	246	41	45	11.9999
::::	chr6:31602273-31602521(+)$1	248	35	39	11.9999
gggg	chr9:131453436-131453694(+)$1	258	1	5	11.9999
F:::	chr9:136233289-136233544(-)$1	255	48	52	11.9999
HHHH	chr3:122101823-122102084(-)$1	261	101	105	11.9999
:::D	chr3:180949472-180949681(+)$1	209	3	7	11.9999
eeee	chr2:152308147-152308417(+)$1	270	92	96	11.9999
bmmm	chr12:54676588-54676852(+)$1	264	117	121	11.9999
hhhh	chr8:61178298-61178553(-)$1	255	56	60	11.9999
$$$$	chr1:93299146-93299422(+)$1	276	95	99	11.9999
clll	chr20:32211031-32211279(+)$1	248	84	88	11.9999
::::	chr1:119689619-119689908(+)$1	289	151	155	11.9999
EE::	chr1:35642746-35642993(-)$1	247	194	198	11.9999
pppf	chr5:38958357-38958614(-)$1	257	113	117	11.9999
IIII	chr1:11083311-11083571(+)$1	260	24	28	11.9999
b]cc	chr2:15644072-15644350(-)$1	278	139	143	11.9999
gggg	chr2:219093513-219093763(+)$1	250	16	20	11.9999
>>>>	chr11:47753465-47753744(-)$1	279	93	97	11.9999
f333	chr5:43297908-43298183(-)$1	275	55	59	11.9999
yyyy	chr7:150023032-150023241(+)$1	209	184	188	11.9999
GGGE	chr7:75070051-75070302(-)$1	251	192	196	11.9999
dddh	chr9:86586607-86586869(-)$1	262	166	170	11.9999
cc:D	chr3:40351395-40351651(+)$1	256	62	66	11.9999
hhhh	chr2:61753369-61753629(-)$1	260	108	112	11.9999
====	chr11:93469676-93469921(-)$1	245	159	163	11.9999
^^^^	chr12:67686485-67686800(+)$1	315	101	105	11.9999
33dd	chr6:31597041-31597301(+)$1	260	102	106	11.9999
D::b	chr3:196229549-196229806(-)$1	257	105	109	11.9999
eeee	chr7:152357571-152357838(-)$1	267	67	71	11.9999
b]gg	chr1:85724005-85724280(-)$1	275	192	196	11.9999
B:gg	chr2:113405244-113405507(+)$1	263	11	15	11.9999
hhhh	chr6:158327169-158327429(+)$1	260	98	102	11.9999
gg$$	chr12:46758241-46758496(-)$1	255	34	38	11.9999

#DB
))))	chr1:11076992-11077242(+)$1	1	47	51	11.9999
(...	chr6:74228884-74229132(-)$1	1	39	43	11.9999
))..	chr3:185641381-185641663(-)$1	1	43	47	11.9999
((((	chr12:123060377-123060658(+)$1	1	15	19	11.9999
..((	chr13:28844931-28845214(+)$1	1	97	101	11.9999
))))	chr18:2700586-2700867(+)$1	1	114	118	11.9999
))))	chr12:9907008-9907249(-)$1	1	85	89	11.9999
))..	chr5:78915839-78916089(+)$1	1	245	249	11.9999
((((	chr11:93467593-93467860(-)$1	1	19	23	11.9999
....	chr5:167922356-167922638(+)$1	1	55	59	11.9999
))))	chr12:112845844-112846115(-)$1	1	261	265	11.9999
((..	chr20:34294876-34295118(-)$1	1	1	5	11.9999
((.(	chr12:133248587-133248844(-)$1	1	34	38	11.9999
....	chr1:22021346-22021632(-)$1	1	118	122	11.9999
.((.	chr1:224581348-224581602(-)$1	1	46	50	11.9999
(...	chr14:103934448-103934707(+)$1	1	173	177	11.9999
....	chr8:86129440-86129687(-)$1	1	24	28	11.9999
....	chr1:156305429-156305687(-)$1	1	79	83	11.9999
....	chr1:173835523-173835736(-)$1	1	99	103	11.9999
....	chr20:48258823-48259080(-)$1	1	86	90	11.9999
...)	chr4:79766129-79766384(+)$1	1	86	90	11.9999
..))	chr16:81703805-81704023(+)$1	1	86	90	11.9999
(...	chr5:134113344-134113626(+)$1	1	156	160	11.9999
(...	chr16:70566444-70566726(+)$1	1	46	50	11.9999
))))	chr2:61749563-61749814(-)$1	1	157	161	11.9999
((.(	chr20:45985188-45985477(-)$1	1	87	91	11.9999
((.(	chr5:40835084-40835361(-)$1	1	47	51	11.9999
))))	chr8:56986412-56986662(-)$1	1	97	101	11.9999
((..	chr11:85714212-85714470(-)$1	1	72	76	11.9999
....	chr5:131039543-131039829(-)$1	1	8	12	11.9999
((((	chr16:31201649-31201908(+)$1	1	115	119	11.9999
))).	chr1:67885462-67885760(-)$1	1	171	175	11.9999
(...	chr3:167413207-167413454(-)$1	1	97	101	11.9999
(...	chr4:2502396-2502650(+)$1	1	22	26	11.9999
....	chr7:121002763-121003021(-)$1	1	13	17	11.9999
((((	chr22:20112891-20113134(+)$1	1	153	157	11.9999
))))	chr4:79786780-79787072(+)$1	1	144	148	11.9999
))).	chr5:40834366-40834642(-)$1	1	102	106	11.9999
((((	chr1:23647835-23648093(-)$1	1	3	7	11.9999
))).	chr2:101910298-101910546(-)$1	1	91	95	11.9999
((((	chr6:160210257-160210509(-)$1	1	19	23	11.9999
(((.	chr6:99848196-99848497(-)$1	1	86	90	11.9999
))..	chr19:13050373-13050615(+)$1	1	138	142	11.9999
....	chr10:62547917-62548179(+)$1	1	36	40	11.9999
....	chr4:39459014-39459277(-)$1	1	128	132	11.9999
....	chr5:158630220-158630516(-)$1	1	32	36	11.9999
((((	chr1:22408213-22408486(+)$1	1	58	62	11.9999
(...	chr6:160448274-160448566(+)$1	1	126	130	11.9999
)).)	chr5:154183237-154183494(+)$1	1	126	130	11.9999
((((	chr18:47016969-47017226(-)$1	1	2	6	11.9999
))))	chr1:31531862-31532125(-)$1	1	99	103	11.9999
))).	chr19:11218114-11218384(+)$1	1	190	194	11.9999
((..	chr10:76982092-76982348(+)$1	1	75	79	11.9999
))).	chr6:53160264-53160502(-)$1	1	182	186	11.9999
(...	chr2:177162549-177162795(+)$1	1	41	45	11.9999
....	chr6:31602273-31602521(+)$1	1	35	39	11.9999
((((	chr9:131453436-131453694(+)$1	1	1	5	11.9999
(...	chr9:136233289-136233544(-)$1	1	48	52	11.9999
((((	chr3:122101823-122102084(-)$1	1	101	105	11.9999
...(	chr3:180949472-180949681(+)$1	1	3	7	11.9999
))))	chr2:152308147-152308417(+)$1	1	92	96	11.9999
(...	chr12:54676588-54676852(+)$1	1	117	121	11.9999
))))	chr8:61178298-61178553(-)$1	1	56	60	11.9999
....	chr1:93299146-93299422(+)$1	1	95	99	11.9999
(...	chr20:32211031-32211279(+)$1	1	84	88	11.9999
....	chr1:119689619-119689908(+)$1	1	151	155	11.9999
))..	chr1:35642746-35642993(-)$1	1	194	198	11.9999
...)	chr5:38958357-38958614(-)$1	1	113	117	11.9999
((((	chr1:11083311-11083571(+)$1	1	24	28	11.9999
).))	chr2:15644072-15644350(-)$1	1	139	143	11.9999
((((	chr2:219093513-219093763(+)$1	1	16	20	11.9999
....	chr11:47753465-47753744(-)$1	1	93	97	11.9999
)...	chr5:43297908-43298183(-)$1	1	55	59	11.9999
....	chr7:150023032-150023241(+)$1	1	184	188	11.9999
))))	chr7:75070051-75070302(-)$1	1	192	196	11.9999
((((	chr9:86586607-86586869(-)$1	1	166	170	11.9999
)).(	chr3:40351395-40351651(+)$1	1	62	66	11.9999
((((	chr2:61753369-61753629(-)$1	1	108	112	11.9999
))))	chr11:93469676-93469921(-)$1	1	159	163	11.9999
....	chr12:67686485-67686800(+)$1	1	101	105	11.9999
..))	chr6:31597041-31597301(+)$1	1	102	106	11.9999
(..(	chr3:196229549-196229806(-)$1	1	105	109	11.9999
((((	chr7:152357571-152357838(-)$1	1	67	71	11.9999
).))	chr1:85724005-85724280(-)$1	1	192	196	11.9999
(.((	chr2:113405244-113405507(+)$1	1	11	15	11.9999
((((	chr6:158327169-158327429(+)$1	1	98	102	11.9999
((..	chr12:46758241-46758496(-)$1	1	34	38	11.9999

#PSSM
C : 0.95	c : 0.04	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	

#score	1043.9999999999998
#seq	87
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_transcript_m2_run2.nuc.txt

#NT
UUUGUGUU	chr1:28807018-28807334(+)$1	316	144	152	16.4166
UUUCUGUU	chr8:17799349-17799574(+)$1	225	72	80	19.8333
UUUCUGCU	chr16:84766381-84766652(+)$1	271	260	268	15.5833
uugcuguu	chr1:100182990-100183279(-)$1	289	18	26	15.0833
ugucuguu	chr7:119354438-119354664(-)$1	226	51	59	15.3333
UUUCUGCU	chr3:180687714-180687980(+)$1	266	11	19	15.5833
CUUCUGUU	chr16:15102682-15102964(+)$1	282	162	170	15.1666
UUUCUGUA	chr1:219355863-219356135(+)$1	272	211	219	15.8333
UUUCUGUU	chr2:61540194-61540458(-)$1	264	67	75	19.8333
uuucuuuu	chr1:93676141-93676372(+)$1	231	30	38	16.4999
auucuguu	chr12:105511087-105511336(+)$1	249	89	97	15.2500
UUUCUGUC	chr2:61594900-61595128(-)$1	228	74	82	15.8333
UUUGUGUU	chr1:184031031-184031316(+)$1	285	26	34	16.4166
uuucuauu	chr1:174279136-174279414(+)$1	278	64	72	15.9166
UUUCUGAU	chr11:119144918-119145227(+)$1	309	130	138	15.3333
UUUCUGCU	chr6:86323564-86323806(-)$1	242	33	41	15.5833
UUUGUGUU	chr1:78434976-78435204(-)$1	228	86	94	16.4166
UUUCUUUU	chr6:149837962-149838209(-)$1	247	45	53	16.4999
uuucuuuu	chr4:443391-443678(-)$1	287	115	123	16.4999
uuuauguu	chr4:104095448-104095716(-)$1	268	74	82	16.1666
UUUCUGUU	chr6:42619720-42620023(+)$1	303	146	154	19.8333
UUUCUGuu	chrX:62568907-62569205(-)$1	298	185	193	19.8333
uuucugcu	chr7:11104285-11104588(+)$1	303	107	115	15.5833
uuucuguu	chr8:93885699-93885956(-)$1	257	127	135	19.8333
UUUCUGUA	chr2:174813586-174813838(-)$1	252	108	116	15.8333
uuucugug	chr2:153543558-153543890(-)$1	332	80	88	15.8333
AUUCUGUU	chr17:30706948-30707242(+)$1	294	17	25	15.2500
uuuuuguu	chr8:101958926-101959206(-)$1	280	66	74	16.5833
UUUCUUUU	chr1:185276787-185277055(-)$1	268	248	256	16.4999
uuucuguu	chr15:49510763-49511055(+)$1	292	219	227	19.8333
uaucuguu	chr1:197133224-197133484(-)$1	260	234	242	15.3333
uuucuuuu	chr21:30310102-30310414(-)$1	312	36	44	16.4999
uuucuguu	chr4:56404433-56404719(-)$1	286	260	268	19.8333
uuucaguu	chr2:32796709-32796972(+)$1	263	55	63	15.1666
uuucuauu	chrX:41032020-41032369(+)$1	349	108	116	15.9166
uuucuuuu	chr16:31909089-31909460(+)$1	371	13	21	16.4999
UUUCUGUG	chr21:36252568-36252792(-)$1	224	11	19	15.8333
UUUUUGUU	chr10:79800141-79800372(+)$1	231	34	42	16.5833
UUUAUGUU	chr19:21363695-21363907(+)$1	212	145	153	16.1666
uuuuuguu	chr11:31508050-31508311(-)$1	261	19	27	16.5833
uuuuuguu	chrX:44781497-44781792(+)$1	295	221	229	16.5833
UUUGUGUU	chr3:6673794-6674077(+)$1	283	115	123	16.4166
UUUCUGUU	chr18:683000-683326(-)$1	326	117	125	19.8333
UUUCUGUC	chr1:35835422-35835690(+)$1	268	3	11	15.8333
UGUCUGUU	chr1:174371657-174371910(+)$1	253	27	35	15.3333
UUUUUGUU	chr5:147809107-147809373(+)$1	266	185	193	16.5833
UUUCUGUG	chr4:68620647-68620983(+)$1	336	298	306	15.8333
UUUCUUUU	chr15:35159859-35160130(-)$1	271	206	214	16.4999
UUUGUGUU	chr13:100812956-100813344(+)$1	388	252	260	16.4166
UUUCAGUU	chr8:101724980-101725267(-)$1	287	55	63	15.1666
uuacuguu	chr18:70827124-70827342(-)$1	218	53	61	15.0833
UUUCUUUU	chr10:74813335-74813595(-)$1	260	234	242	16.4999
uuuuuguu	chr21:40633786-40634035(-)$1	249	53	61	16.5833
UUUCUGUU	chr5:65364314-65364560(+)$1	246	21	29	19.8333
UUUCUGUA	chr1:97270545-97270766(+)$1	221	68	76	15.8333
UUUCUGUU	chr3:73067890-73068173(+)$1	283	158	166	19.8333
uuucuuuu	chr8:31004209-31004611(+)$1	402	340	348	16.4999
uuucuguc	chr2:58425363-58425631(-)$1	268	183	191	15.8333
UUUUUGUU	chr7:119504945-119505259(-)$1	314	230	238	16.5833

#otherMatches

#Struct PSSM
llffffff	chr9:125719831-125720196(+)$1	365	149	157	15.3333
fffflllf	chr1:28807018-28807334(+)$1	316	144	152	16.4166
:::::EEE	chr8:17799349-17799574(+)$1	225	72	80	19.8333
HHHHHH::	chr16:84766381-84766652(+)$1	271	260	268	15.5833
eeee]ddd	chr1:100182990-100183279(-)$1	289	18	26	15.0833
eee!!fff	chr7:119354438-119354664(-)$1	226	51	59	15.3333
DDDKKBB{	chr3:180687714-180687980(+)$1	266	11	19	15.5833
bmmmmbb2	chr16:15102682-15102964(+)$1	282	162	170	15.1666
:JJJJJJJ	chr1:219355863-219356135(+)$1	272	211	219	15.8333
hhhhoooo	chr2:61540194-61540458(-)$1	264	67	75	19.8333
EEEEEEEE	chr1:93676141-93676372(+)$1	231	30	38	16.4999
f::dddd"	chr12:105511087-105511336(+)$1	249	89	97	15.2500
22bb]fff	chr2:61594900-61595128(-)$1	228	74	82	15.8333
========	chr1:184031031-184031316(+)$1	285	26	34	16.4166
$$$$$===	chr1:174279136-174279414(+)$1	278	64	72	15.9166
mmmeeeee	chr11:119144918-119145227(+)$1	309	130	138	15.3333
=####ccc	chr6:86323564-86323806(-)$1	242	33	41	15.5833
GGGG{CCC	chr1:78434976-78435204(-)$1	228	86	94	16.4166
(((((((d	chr6:149837962-149838209(-)$1	247	45	53	16.4999
ddddmmmm	chr4:443391-443678(-)$1	287	115	123	16.4999
HHHH{EEE	chr4:104095448-104095716(-)$1	268	74	82	16.1666
hhhhhhhh	chr6:42619720-42620023(+)$1	303	146	154	19.8333
DDDDYYGG	chrX:62568907-62569205(-)$1	298	185	193	19.8333
::::eeee	chr7:11104285-11104588(+)$1	303	107	115	15.5833
eeeeqqqq	chr8:93885699-93885956(-)$1	257	127	135	19.8333
GG:::::d	chr2:174813586-174813838(-)$1	252	108	116	15.8333
KCCC{A{C	chr2:153543558-153543890(-)$1	332	80	88	15.8333
ggg[cccc	chr17:30706948-30707242(+)$1	294	17	25	15.2500
fff:::::	chr8:101958926-101959206(-)$1	280	66	74	16.5833
~~~~DDDD	chr1:185276787-185277055(-)$1	268	248	256	16.4999
e7777777	chr15:49510763-49511055(+)$1	292	219	227	19.8333
zzzzgggg	chr1:197133224-197133484(-)$1	260	234	242	15.3333
::::::::	chr21:30310102-30310414(-)$1	312	36	44	16.4999
::::::EE	chr4:56404433-56404719(-)$1	286	260	268	19.8333
ssssssss	chr2:32796709-32796972(+)$1	263	55	63	15.1666
ffccc22b	chrX:41032020-41032369(+)$1	349	108	116	15.9166
KBBWWWWW	chr16:31909089-31909460(+)$1	371	13	21	16.4999
ffffoooo	chr21:36252568-36252792(-)$1	224	11	19	15.8333
::::::::	chr10:79800141-79800372(+)$1	231	34	42	16.5833
!dddd!!b	chr19:21363695-21363907(+)$1	212	145	153	16.1666
::::::::	chr11:31508050-31508311(-)$1	261	19	27	16.5833
:::::eee	chrX:44781497-44781792(+)$1	295	221	229	16.5833
=####ddd	chr3:6673794-6674077(+)$1	283	115	123	16.4166
>>>>>>>>	chr18:683000-683326(-)$1	326	117	125	19.8333
::::::::	chr1:35835422-35835690(+)$1	268	3	11	15.8333
CCC{GGGG	chr1:174371657-174371910(+)$1	253	27	35	15.3333
::::::::	chr5:147809107-147809373(+)$1	266	185	193	16.5833
YBBZZZDD	chr4:68620647-68620983(+)$1	336	298	306	15.8333
????JJJJ	chr15:35159859-35160130(-)$1	271	206	214	16.4999
=]ccc:::	chr13:100812956-100813344(+)$1	388	252	260	16.4166
======$$	chr8:101724980-101725267(-)$1	287	55	63	15.1666
xxxxxxxx	chr18:70827124-70827342(-)$1	218	53	61	15.0833
:::::fff	chr10:74813335-74813595(-)$1	260	234	242	16.4999
iii]bb44	chr21:40633786-40634035(-)$1	249	53	61	16.5833
ggggggg:	chr5:65364314-65364560(+)$1	246	21	29	19.8333
pppppppf	chr1:97270545-97270766(+)$1	221	68	76	15.8333
22bb]a22	chr3:73067890-73068173(+)$1	283	158	166	19.8333
qqqqqqqf	chr8:31004209-31004611(+)$1	402	340	348	16.4999
::::::::	chr2:58425363-58425631(-)$1	268	183	191	15.8333
_HHHHHHH	chr7:119504945-119505259(-)$1	314	230	238	16.5833

#DB
..))))))	chr9:125719831-125720196(+)$1	1	149	157	15.3333
((((...)	chr1:28807018-28807334(+)$1	1	144	152	16.4166
.....(((	chr8:17799349-17799574(+)$1	1	72	80	19.8333
))))))..	chr16:84766381-84766652(+)$1	1	260	268	15.5833
)))).)))	chr1:100182990-100183279(-)$1	1	18	26	15.0833
(((..(((	chr7:119354438-119354664(-)$1	1	51	59	15.3333
(((..((.	chr3:180687714-180687980(+)$1	1	11	19	15.5833
(....)).	chr16:15102682-15102964(+)$1	1	162	170	15.1666
.)))))))	chr1:219355863-219356135(+)$1	1	211	219	15.8333
((((....	chr2:61540194-61540458(-)$1	1	67	75	19.8333
((((((((	chr1:93676141-93676372(+)$1	1	30	38	16.4999
)..((((.	chr12:105511087-105511336(+)$1	1	89	97	15.2500
..)).)))	chr2:61594900-61595128(-)$1	1	74	82	15.8333
))))))))	chr1:184031031-184031316(+)$1	1	26	34	16.4166
.....(((	chr1:174279136-174279414(+)$1	1	64	72	15.9166
...)))))	chr11:119144918-119145227(+)$1	1	130	138	15.3333
(....(((	chr6:86323564-86323806(-)$1	1	33	41	15.5833
((((.(((	chr1:78434976-78435204(-)$1	1	86	94	16.4166
.......(	chr6:149837962-149838209(-)$1	1	45	53	16.4999
((((....	chr4:443391-443678(-)$1	1	115	123	16.4999
((((.(((	chr4:104095448-104095716(-)$1	1	74	82	16.1666
))))))))	chr6:42619720-42620023(+)$1	1	146	154	19.8333
))))..))	chrX:62568907-62569205(-)$1	1	185	193	19.8333
....((((	chr7:11104285-11104588(+)$1	1	107	115	15.5833
((((....	chr8:93885699-93885956(-)$1	1	127	135	19.8333
)).....(	chr2:174813586-174813838(-)$1	1	108	116	15.8333
.(((.(.(	chr2:153543558-153543890(-)$1	1	80	88	15.8333
(((.((((	chr17:30706948-30707242(+)$1	1	17	25	15.2500
))).....	chr8:101958926-101959206(-)$1	1	66	74	16.5833
....))))	chr1:185276787-185277055(-)$1	1	248	256	16.4999
).......	chr15:49510763-49511055(+)$1	1	219	227	19.8333
....))))	chr1:197133224-197133484(-)$1	1	234	242	15.3333
........	chr21:30310102-30310414(-)$1	1	36	44	16.4999
......))	chr4:56404433-56404719(-)$1	1	260	268	19.8333
........	chr2:32796709-32796972(+)$1	1	55	63	15.1666
)))))..)	chrX:41032020-41032369(+)$1	1	108	116	15.9166
.((.....	chr16:31909089-31909460(+)$1	1	13	21	16.4999
((((....	chr21:36252568-36252792(-)$1	1	11	19	15.8333
........	chr10:79800141-79800372(+)$1	1	34	42	16.5833
.((((..(	chr19:21363695-21363907(+)$1	1	145	153	16.1666
........	chr11:31508050-31508311(-)$1	1	19	27	16.5833
.....(((	chrX:44781497-44781792(+)$1	1	221	229	16.5833
(....(((	chr3:6673794-6674077(+)$1	1	115	123	16.4166
........	chr18:683000-683326(-)$1	1	117	125	19.8333
........	chr1:35835422-35835690(+)$1	1	3	11	15.8333
(((.((((	chr1:174371657-174371910(+)$1	1	27	35	15.3333
........	chr5:147809107-147809373(+)$1	1	185	193	16.5833
.))...))	chr4:68620647-68620983(+)$1	1	298	306	15.8333
....))))	chr15:35159859-35160130(-)$1	1	206	214	16.4999
).)))...	chr13:100812956-100813344(+)$1	1	252	260	16.4166
((((((..	chr8:101724980-101725267(-)$1	1	55	63	15.1666
........	chr18:70827124-70827342(-)$1	1	53	61	15.0833
.....(((	chr10:74813335-74813595(-)$1	1	234	242	16.4999
))).))..	chr21:40633786-40634035(-)$1	1	53	61	16.5833
))))))).	chr5:65364314-65364560(+)$1	1	21	29	19.8333
.......)	chr1:97270545-97270766(+)$1	1	68	76	15.8333
..)).)..	chr3:73067890-73068173(+)$1	1	158	166	19.8333
.......)	chr8:31004209-31004611(+)$1	1	340	348	16.4999
........	chr2:58425363-58425631(-)$1	1	183	191	15.8333
.)))))))	chr7:119504945-119505259(-)$1	1	230	238	16.5833

#PSSM
U : 0.56	u : 0.38	C : 0.01	a : 0.01	A : 0.01	
U : 0.56	u : 0.36	A : 0.01	g : 0.01	a : 0.01	G : 0.01	
U : 0.60	u : 0.36	g : 0.01	a : 0.01	
C : 0.44	c : 0.31	G : 0.08	u : 0.06	U : 0.05	a : 0.01	A : 0.01	
U : 0.58	u : 0.38	a : 0.01	A : 0.01	
G : 0.53	g : 0.28	u : 0.08	U : 0.06	a : 0.03	
U : 0.51	u : 0.39	C : 0.05	A : 0.01	c : 0.01	
U : 0.46	u : 0.38	A : 0.05	C : 0.03	G : 0.03	g : 0.01	c : 0.01	

#score	996.8333333333337
#seq	60
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_transcript_m3_run2.nuc.txt

#NT
UGGG	chr16:89041026-89041286(-)$1	260	38	42	11.9999
UGGG	chr9:130331080-130331356(-)$1	276	204	208	11.9999
uggg	chr16:88563267-88563524(+)$1	257	83	87	11.9999
uggg	chr8:140763703-140763978(-)$1	275	26	30	11.9999
UGGG	chr5:154136214-154136453(+)$1	239	83	87	11.9999
UGGG	chr17:79959356-79959637(+)$1	281	130	134	11.9999
UGGG	chr2:97534068-97534333(-)$1	265	14	18	11.9999
UGGG	chr8:1779264-1779565(+)$1	301	38	42	11.9999
UGGG	chr2:97532156-97532383(-)$1	227	25	29	11.9999
UGGG	chr10:35758122-35758400(+)$1	278	254	258	11.9999
UGGG	chr3:186504451-186504658(+)$1	207	130	134	11.9999
UGGG	chr19:2270594-2270844(+)$1	250	30	34	11.9999
UGGG	chr2:196522001-196522262(+)$1	261	89	93	11.9999
uggg	chr12:104518947-104519154(+)$1	207	149	153	11.9999
UGGG	chr19:4037008-4037254(+)$1	246	52	56	11.9999
UGGG	chr6:149638676-149638924(+)$1	248	25	29	11.9999
UGGG	chr19:47733659-47733946(-)$1	287	3	7	11.9999
UGGG	chr1:12642684-12642915(-)$1	231	50	54	11.9999
Uggg	chr16:447307-447583(+)$1	276	11	15	11.9999
UGGG	chr1:12644335-12644618(-)$1	283	64	68	11.9999
uggg	chr21:46937105-46937364(-)$1	259	174	178	11.9999
uggg	chr21:46285988-46286255(-)$1	267	9	13	11.9999
UGGG	chr1:569799-570083(-)$1	284	3	7	11.9999
UGGG	chr7:150784820-150785062(+)$1	242	74	78	11.9999
uggg	chr16:85656735-85656974(+)$1	239	177	181	11.9999
UGGG	chr16:81609319-81609569(+)$1	250	2	6	11.9999
UGGG	chr1:1510060-1510323(-)$1	263	224	228	11.9999
uggg	chr9:140463435-140463747(-)$1	312	62	66	11.9999
UGGG	chr2:97550704-97550952(-)$1	248	68	72	11.9999
UGGG	chr22:49980952-49981183(-)$1	231	26	30	11.9999
UGGG	chr7:1475173-1475421(-)$1	248	137	141	11.9999
UGGG	chr22:49982520-49982738(-)$1	218	33	37	11.9999
UGGG	chr22:50042890-50043132(-)$1	242	4	8	11.9999
UGGG	chr22:50009117-50009335(-)$1	218	147	151	11.9999
UGGG	chr22:35740414-35740655(+)$1	241	113	117	11.9999
UGGG	chr21:46930229-46930525(-)$1	296	62	66	11.9999
UGGG	chr1:27024261-27024489(+)$1	228	200	204	11.9999
uggg	chr1:1409775-1410031(+)$1	256	61	65	11.9999
UGGG	chr9:94711307-94711555(-)$1	248	49	53	11.9999
UGGG	chr2:232575426-232575690(+)$1	264	28	32	11.9999
UGGG	chr19:41882957-41883204(+)$1	247	125	129	11.9999
UGGG	chr16:85677107-85677364(+)$1	257	171	175	11.9999
UGGG	chr22:50034932-50035180(-)$1	248	90	94	11.9999
UGGG	chr3:183353787-183354045(+)$1	258	95	99	11.9999
UGGG	chr7:1492364-1492630(-)$1	266	30	34	11.9999
UGGG	chr22:50032209-50032458(-)$1	249	197	201	11.9999
UGGG	chr19:879176-879445(-)$1	269	7	11	11.9999
UGGG	chr20:62516995-62517218(+)$1	223	14	18	11.9999
UGGG	chr1:1207829-1208069(-)$1	240	190	194	11.9999
UGGG	chr12:109124817-109125064(-)$1	247	25	29	11.9999
UGGG	chr13:114565222-114565468(-)$1	246	61	65	11.9999
UGGG	chr8:1786908-1787177(+)$1	269	4	8	11.9999
UGGG	chr12:123994253-123994498(-)$1	245	181	185	11.9999
UGGG	chr21:45945131-45945462(+)$1	331	169	173	11.9999
UGGG	chr4:1239958-1240194(-)$1	236	173	177	11.9999
UGGG	chr4:2414767-2415013(-)$1	246	179	183	11.9999
UGGG	chr4:1237546-1237789(-)$1	243	58	62	11.9999
UGGG	chr13:27745067-27745327(-)$1	260	202	206	11.9999
UGGG	chr1:12645452-12645749(-)$1	297	15	19	11.9999
UGGG	chr20:60625157-60625431(-)$1	274	57	61	11.9999
UGGG	chr21:44394935-44395186(+)$1	251	159	163	11.9999
uggg	chr19:2198034-2198262(+)$1	228	99	103	11.9999
uggg	chr17:80544006-80544223(+)$1	217	119	123	11.9999
UGGG	chr16:88582672-88582961(+)$1	289	100	104	11.9999
UGGG	chr19:47731912-47732165(-)$1	253	32	36	11.9999
uggg	chr9:139560322-139560555(+)$1	233	2	6	11.9999
uggg	chr17:80544070-80544301(+)$1	231	55	59	11.9999
UGGG	chrM:14277-14487(-)$1	210	56	60	11.9999
uggg	chr20:62901161-62901436(+)$1	275	10	14	11.9999
uggg	chr1:27923011-27923286(-)$1	275	4	8	11.9999
uggg	chr10:18841386-18841646(-)$1	260	23	27	11.9999
UGGG	chr5:179232226-179232504(-)$1	278	8	12	11.9999
UGGG	chr22:50039482-50039738(-)$1	256	156	160	11.9999
UGGG	chr21:45560143-45560414(+)$1	271	127	131	11.9999
UGGG	chr9:136131157-136131421(-)$1	264	100	104	11.9999
UGGG	chr7:1480887-1481132(-)$1	245	62	66	11.9999
UGGG	chr5:612490-612762(+)$1	272	65	69	11.9999
UGGG	chr19:1410344-1410582(+)$1	238	71	75	11.9999
UGGG	chr19:2271143-2271390(+)$1	247	1	5	11.9999
UGGG	chr22:50032602-50032827(-)$1	225	187	191	11.9999
UGGG	chr19:1409689-1409913(+)$1	224	60	64	11.9999
UGGG	chr8:645115-645407(-)$1	292	201	205	11.9999
UGGG	chr12:133138606-133138829(+)$1	223	90	94	11.9999
UGGG	chr10:32635166-32635436(-)$1	270	57	61	11.9999
uggg	chr22:49885714-49885968(-)$1	254	6	10	11.9999
UGGG	chr19:2270063-2270309(+)$1	246	25	29	11.9999
UGGG	chr2:97535368-97535654(-)$1	286	147	151	11.9999
UGGG	chr19:945606-945842(+)$1	236	58	62	11.9999
UGGG	chr22:49925236-49925485(-)$1	249	17	21	11.9999
UGGG	chr16:88588293-88588538(+)$1	245	145	149	11.9999
UGGG	chr19:5095591-5095850(+)$1	259	95	99	11.9999
UGGG	chr9:136148488-136148751(-)$1	263	14	18	11.9999

#otherMatches

#Struct PSSM
MJJJ	chr22:50021640-50021900(-)$1	260	43	47	11.9999
eeee	chr16:89041026-89041286(-)$1	260	38	42	11.9999
:::c	chr9:130331080-130331356(-)$1	276	204	208	11.9999
:eee	chr16:88563267-88563524(+)$1	257	83	87	11.9999
hhhh	chr8:140763703-140763978(-)$1	275	26	30	11.9999
h22e	chr5:154136214-154136453(+)$1	239	83	87	11.9999
b[ee	chr17:79959356-79959637(+)$1	281	130	134	11.9999
{CCC	chr2:97534068-97534333(-)$1	265	14	18	11.9999
c&&&	chr8:1779264-1779565(+)$1	301	38	42	11.9999
bnnn	chr2:97532156-97532383(-)$1	227	25	29	11.9999
BBBB	chr10:35758122-35758400(+)$1	278	254	258	11.9999
[ddd	chr3:186504451-186504658(+)$1	207	130	134	11.9999
eeee	chr19:2270594-2270844(+)$1	250	30	34	11.9999
ffff	chr2:196522001-196522262(+)$1	261	89	93	11.9999
EEEE	chr12:104518947-104519154(+)$1	207	149	153	11.9999
:ddd	chr19:4037008-4037254(+)$1	246	52	56	11.9999
ccdd	chr6:149638676-149638924(+)$1	248	25	29	11.9999
JJJJ	chr19:47733659-47733946(-)$1	287	3	7	11.9999
c[a[	chr1:12642684-12642915(-)$1	231	50	54	11.9999
{III	chr16:447307-447583(+)$1	276	11	15	11.9999
cc!!	chr1:12644335-12644618(-)$1	283	64	68	11.9999
ccc[	chr21:46937105-46937364(-)$1	259	174	178	11.9999
FDDD	chr21:46285988-46286255(-)$1	267	9	13	11.9999
ffff	chr1:569799-570083(-)$1	284	3	7	11.9999
FFFF	chr7:150784820-150785062(+)$1	242	74	78	11.9999
DDff	chr16:85656735-85656974(+)$1	239	177	181	11.9999
JJJJ	chr16:81609319-81609569(+)$1	250	2	6	11.9999
ffff	chr1:1510060-1510323(-)$1	263	224	228	11.9999
DDDD	chr9:140463435-140463747(-)$1	312	62	66	11.9999
ffff	chr2:97550704-97550952(-)$1	248	68	72	11.9999
{DDD	chr22:49980952-49981183(-)$1	231	26	30	11.9999
JJJJ	chr7:1475173-1475421(-)$1	248	137	141	11.9999
IIII	chr22:49982520-49982738(-)$1	218	33	37	11.9999
FFFF	chr22:50042890-50043132(-)$1	242	4	8	11.9999
====	chr22:50009117-50009335(-)$1	218	147	151	11.9999
3ddd	chr22:35740414-35740655(+)$1	241	113	117	11.9999
eeee	chr21:46930229-46930525(-)$1	296	62	66	11.9999
6666	chr1:27024261-27024489(+)$1	228	200	204	11.9999
33gg	chr1:1409775-1410031(+)$1	256	61	65	11.9999
cccn	chr9:94711307-94711555(-)$1	248	49	53	11.9999
IIIC	chr2:232575426-232575690(+)$1	264	28	32	11.9999
f]a]	chr19:41882957-41883204(+)$1	247	125	129	11.9999
mmmg	chr16:85677107-85677364(+)$1	257	171	175	11.9999
[ccc	chr22:50034932-50035180(-)$1	248	90	94	11.9999
cc[b	chr3:183353787-183354045(+)$1	258	95	99	11.9999
eee$	chr7:1492364-1492630(-)$1	266	30	34	11.9999
iiii	chr22:50032209-50032458(-)$1	249	197	201	11.9999
a###	chr19:879176-879445(-)$1	269	7	11	11.9999
[fff	chr20:62516995-62517218(+)$1	223	14	18	11.9999
EE~~	chr1:1207829-1208069(-)$1	240	190	194	11.9999
c:dd	chr12:109124817-109125064(-)$1	247	25	29	11.9999
EEE{	chr13:114565222-114565468(-)$1	246	61	65	11.9999
::::	chr8:1786908-1787177(+)$1	269	4	8	11.9999
GGBB	chr12:123994253-123994498(-)$1	245	181	185	11.9999
ooee	chr21:45945131-45945462(+)$1	331	169	173	11.9999
:ddd	chr4:1239958-1240194(-)$1	236	173	177	11.9999
dddd	chr4:2414767-2415013(-)$1	246	179	183	11.9999
mccc	chr4:1237546-1237789(-)$1	243	58	62	11.9999
C}GG	chr13:27745067-27745327(-)$1	260	202	206	11.9999
eeee	chr1:12645452-12645749(-)$1	297	15	19	11.9999
::::	chr20:60625157-60625431(-)$1	274	57	61	11.9999
YBBE	chr21:44394935-44395186(+)$1	251	159	163	11.9999
""hh	chr19:2198034-2198262(+)$1	228	99	103	11.9999
dddC	chr17:80544006-80544223(+)$1	217	119	123	11.9999
dd:E	chr16:88582672-88582961(+)$1	289	100	104	11.9999
gggg	chr19:47731912-47732165(-)$1	253	32	36	11.9999
c[ee	chr9:139560322-139560555(+)$1	233	2	6	11.9999
DDD:	chr17:80544070-80544301(+)$1	231	55	59	11.9999
5555	chrM:14277-14487(-)$1	210	56	60	11.9999
d[ee	chr20:62901161-62901436(+)$1	275	10	14	11.9999
bbpp	chr1:27923011-27923286(-)$1	275	4	8	11.9999
cccd	chr10:18841386-18841646(-)$1	260	23	27	11.9999
===m	chr5:179232226-179232504(-)$1	278	8	12	11.9999
hhhl	chr22:50039482-50039738(-)$1	256	156	160	11.9999
oood	chr21:45560143-45560414(+)$1	271	127	131	11.9999
ffff	chr9:136131157-136131421(-)$1	264	100	104	11.9999
hhhh	chr7:1480887-1481132(-)$1	245	62	66	11.9999
c]a2	chr5:612490-612762(+)$1	272	65	69	11.9999
E{EE	chr19:1410344-1410582(+)$1	238	71	75	11.9999
HHHH	chr19:2271143-2271390(+)$1	247	1	5	11.9999
JJJJ	chr22:50032602-50032827(-)$1	225	187	191	11.9999
]ccc	chr19:1409689-1409913(+)$1	224	60	64	11.9999
obbD	chr8:645115-645407(-)$1	292	201	205	11.9999
4ddd	chr12:133138606-133138829(+)$1	223	90	94	11.9999
d[bb	chr10:32635166-32635436(-)$1	270	57	61	11.9999
CCCM	chr22:49885714-49885968(-)$1	254	6	10	11.9999
qqff	chr19:2270063-2270309(+)$1	246	25	29	11.9999
[ddd	chr2:97535368-97535654(-)$1	286	147	151	11.9999
[fff	chr19:945606-945842(+)$1	236	58	62	11.9999
:::J	chr22:49925236-49925485(-)$1	249	17	21	11.9999
8ggg	chr16:88588293-88588538(+)$1	245	145	149	11.9999
eemm	chr19:5095591-5095850(+)$1	259	95	99	11.9999
mmdd	chr9:136148488-136148751(-)$1	263	14	18	11.9999

#DB
.(((	chr22:50021640-50021900(-)$1	1	43	47	11.9999
((((	chr16:89041026-89041286(-)$1	1	38	42	11.9999
...(	chr9:130331080-130331356(-)$1	1	204	208	11.9999
.(((	chr16:88563267-88563524(+)$1	1	83	87	11.9999
((((	chr8:140763703-140763978(-)$1	1	26	30	11.9999
)..)	chr5:154136214-154136453(+)$1	1	83	87	11.9999
(.((	chr17:79959356-79959637(+)$1	1	130	134	11.9999
.(((	chr2:97534068-97534333(-)$1	1	14	18	11.9999
(...	chr8:1779264-1779565(+)$1	1	38	42	11.9999
(...	chr2:97532156-97532383(-)$1	1	25	29	11.9999
))))	chr10:35758122-35758400(+)$1	1	254	258	11.9999
.(((	chr3:186504451-186504658(+)$1	1	130	134	11.9999
))))	chr19:2270594-2270844(+)$1	1	30	34	11.9999
))))	chr2:196522001-196522262(+)$1	1	89	93	11.9999
((((	chr12:104518947-104519154(+)$1	1	149	153	11.9999
.(((	chr19:4037008-4037254(+)$1	1	52	56	11.9999
((((	chr6:149638676-149638924(+)$1	1	25	29	11.9999
((((	chr19:47733659-47733946(-)$1	1	3	7	11.9999
(.(.	chr1:12642684-12642915(-)$1	1	50	54	11.9999
.(((	chr16:447307-447583(+)$1	1	11	15	11.9999
((..	chr1:12644335-12644618(-)$1	1	64	68	11.9999
(((.	chr21:46937105-46937364(-)$1	1	174	178	11.9999
((((	chr21:46285988-46286255(-)$1	1	9	13	11.9999
((((	chr1:569799-570083(-)$1	1	3	7	11.9999
))))	chr7:150784820-150785062(+)$1	1	74	78	11.9999
))((	chr16:85656735-85656974(+)$1	1	177	181	11.9999
((((	chr16:81609319-81609569(+)$1	1	2	6	11.9999
))))	chr1:1510060-1510323(-)$1	1	224	228	11.9999
((((	chr9:140463435-140463747(-)$1	1	62	66	11.9999
))))	chr2:97550704-97550952(-)$1	1	68	72	11.9999
.(((	chr22:49980952-49981183(-)$1	1	26	30	11.9999
((((	chr7:1475173-1475421(-)$1	1	137	141	11.9999
((((	chr22:49982520-49982738(-)$1	1	33	37	11.9999
((((	chr22:50042890-50043132(-)$1	1	4	8	11.9999
((((	chr22:50009117-50009335(-)$1	1	147	151	11.9999
.)))	chr22:35740414-35740655(+)$1	1	113	117	11.9999
))))	chr21:46930229-46930525(-)$1	1	62	66	11.9999
....	chr1:27024261-27024489(+)$1	1	200	204	11.9999
..))	chr1:1409775-1410031(+)$1	1	61	65	11.9999
(((.	chr9:94711307-94711555(-)$1	1	49	53	11.9999
((((	chr2:232575426-232575690(+)$1	1	28	32	11.9999
).).	chr19:41882957-41883204(+)$1	1	125	129	11.9999
...)	chr16:85677107-85677364(+)$1	1	171	175	11.9999
.(((	chr22:50034932-50035180(-)$1	1	90	94	11.9999
((.(	chr3:183353787-183354045(+)$1	1	95	99	11.9999
(((.	chr7:1492364-1492630(-)$1	1	30	34	11.9999
((((	chr22:50032209-50032458(-)$1	1	197	201	11.9999
(...	chr19:879176-879445(-)$1	1	7	11	11.9999
.(((	chr20:62516995-62517218(+)$1	1	14	18	11.9999
))..	chr1:1207829-1208069(-)$1	1	190	194	11.9999
).((	chr12:109124817-109125064(-)$1	1	25	29	11.9999
(((.	chr13:114565222-114565468(-)$1	1	61	65	11.9999
....	chr8:1786908-1787177(+)$1	1	4	8	11.9999
))))	chr12:123994253-123994498(-)$1	1	181	185	11.9999
..))	chr21:45945131-45945462(+)$1	1	169	173	11.9999
.(((	chr4:1239958-1240194(-)$1	1	173	177	11.9999
((((	chr4:2414767-2415013(-)$1	1	179	183	11.9999
.)))	chr4:1237546-1237789(-)$1	1	58	62	11.9999
).))	chr13:27745067-27745327(-)$1	1	202	206	11.9999
((((	chr1:12645452-12645749(-)$1	1	15	19	11.9999
....	chr20:60625157-60625431(-)$1	1	57	61	11.9999
.)))	chr21:44394935-44395186(+)$1	1	159	163	11.9999
..((	chr19:2198034-2198262(+)$1	1	99	103	11.9999
))))	chr17:80544006-80544223(+)$1	1	119	123	11.9999
)).)	chr16:88582672-88582961(+)$1	1	100	104	11.9999
((((	chr19:47731912-47732165(-)$1	1	32	36	11.9999
(.((	chr9:139560322-139560555(+)$1	1	2	6	11.9999
(((.	chr17:80544070-80544301(+)$1	1	55	59	11.9999
....	chrM:14277-14487(-)$1	1	56	60	11.9999
(.((	chr20:62901161-62901436(+)$1	1	10	14	11.9999
((..	chr1:27923011-27923286(-)$1	1	4	8	11.9999
((((	chr10:18841386-18841646(-)$1	1	23	27	11.9999
(((.	chr5:179232226-179232504(-)$1	1	8	12	11.9999
(((.	chr22:50039482-50039738(-)$1	1	156	160	11.9999
...)	chr21:45560143-45560414(+)$1	1	127	131	11.9999
))))	chr9:136131157-136131421(-)$1	1	100	104	11.9999
))))	chr7:1480887-1481132(-)$1	1	62	66	11.9999
).).	chr5:612490-612762(+)$1	1	65	69	11.9999
(.((	chr19:1410344-1410582(+)$1	1	71	75	11.9999
((((	chr19:2271143-2271390(+)$1	1	1	5	11.9999
))))	chr22:50032602-50032827(-)$1	1	187	191	11.9999
.)))	chr19:1409689-1409913(+)$1	1	60	64	11.9999
.)))	chr8:645115-645407(-)$1	1	201	205	11.9999
.)))	chr12:133138606-133138829(+)$1	1	90	94	11.9999
(.((	chr10:32635166-32635436(-)$1	1	57	61	11.9999
(((.	chr22:49885714-49885968(-)$1	1	6	10	11.9999
..))	chr19:2270063-2270309(+)$1	1	25	29	11.9999
.(((	chr2:97535368-97535654(-)$1	1	147	151	11.9999
.(((	chr19:945606-945842(+)$1	1	58	62	11.9999
...(	chr22:49925236-49925485(-)$1	1	17	21	11.9999
.)))	chr16:88588293-88588538(+)$1	1	145	149	11.9999
((..	chr19:5095591-5095850(+)$1	1	95	99	11.9999
..))	chr9:136148488-136148751(-)$1	1	14	18	11.9999

#PSSM
U : 0.82	u : 0.17	
G : 0.81	g : 0.18	
G : 0.81	g : 0.18	
G : 0.81	g : 0.18	

#score	1115.9999999999998
#seq	93
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_transcript_m2_run1.nuc.txt

#NT
CCCAG	chr19:1408465-1408707(+)$1	242	108	113	14.9999
CCCAG	chr9:137256015-137256281(+)$1	266	194	199	14.9999
CCCAG	chr19:1980524-1980771(+)$1	247	161	166	14.9999
CCCAG	chr7:94285765-94285993(+)$1	228	55	60	14.9999
CCCAG	chr6:32157703-32157955(-)$1	252	80	85	14.9999
CCCAG	chr2:10539693-10539961(+)$1	268	227	232	14.9999
CCCAG	chr17:78237331-78237599(+)$1	268	136	141	14.9999
CCCAG	chr21:38512786-38513031(+)$1	245	122	127	14.9999
CCCAG	chr21:46855930-46856205(+)$1	275	250	255	14.9999
CCCAG	chr17:79963634-79963860(+)$1	226	74	79	14.9999
CCCAG	chr3:197243865-197244154(-)$1	289	139	144	14.9999
CCCAG	chr15:28358618-28358861(-)$1	243	154	159	14.9999
cccag	chr19:893460-893690(+)$1	230	151	156	14.9999
CCCAG	chr2:128848779-128849056(+)$1	277	213	218	14.9999
CCCAG	chr19:42755897-42756138(-)$1	241	106	111	14.9999
CCCAG	chr14:90863424-90863682(+)$1	258	202	207	14.9999
CCCAG	chr13:113356084-113356360(+)$1	276	71	76	14.9999
CCCAG	chr10:79580902-79581150(-)$1	248	207	212	14.9999
CCCAG	chr15:25321901-25322153(+)$1	252	97	102	14.9999
CCCAG	chr20:31060474-31060737(-)$1	263	36	41	14.9999
CCCAG	chr22:48977532-48977852(+)$1	320	290	295	14.9999
CCCAG	chr4:79176298-79176559(+)$1	261	187	192	14.9999
CCCAG	chr12:56552049-56552288(+)$1	239	8	13	14.9999
CCCAG	chr15:28377204-28377466(-)$1	262	114	119	14.9999
CCCAG	chr21:46845099-46845379(+)$1	280	18	23	14.9999
CCCAG	chr19:19303600-19304011(+)$1	411	6	11	14.9999
CCCAG	chr3:48448190-48448401(-)$1	211	63	68	14.9999
CCCAG	chr17:95439-95764(-)$1	325	208	213	14.9999
CCCAG	chr9:35712876-35713131(-)$1	255	133	138	14.9999
CCCAG	chr19:44118334-44118651(-)$1	317	266	271	14.9999
CCCAG	chr17:35634750-35634997(-)$1	247	199	204	14.9999
CCCAG	chr19:1416689-1416946(+)$1	257	96	101	14.9999
CCCAG	chr16:16421913-16422158(+)$1	245	93	98	14.9999
CCCAG	chr10:19620197-19620420(+)$1	223	44	49	14.9999
CCCAG	chr9:79946825-79947112(+)$1	287	95	100	14.9999
cccag	chr16:70076153-70076389(-)$1	236	219	224	14.9999
CCCAG	chr6:32945897-32946149(+)$1	252	39	44	14.9999
CCCAG	chr1:17995419-17995666(+)$1	247	221	226	14.9999
CCCAG	chr1:39909017-39909245(+)$1	228	101	106	14.9999
CCCAG	chr2:170655293-170655589(+)$1	296	55	60	14.9999
CCCAG	chr22:35740110-35740386(+)$1	276	78	83	14.9999
CCCAG	chr3:47098453-47098766(-)$1	313	27	32	14.9999
CCCAG	chr9:137254511-137254737(+)$1	226	44	49	14.9999
CCCAG	chr15:28356966-28357212(-)$1	246	103	108	14.9999
CCCAG	chr14:23564651-23564953(+)$1	302	79	84	14.9999

#otherMatches

#Struct PSSM
::EEE	chr5:139908043-139908301(+)$1	258	16	21	14.9999
ddd[f	chr19:1408465-1408707(+)$1	242	108	113	14.9999
JJJJJ	chr9:137256015-137256281(+)$1	266	194	199	14.9999
fffff	chr19:1980524-1980771(+)$1	247	161	166	14.9999
::::H	chr7:94285765-94285993(+)$1	228	55	60	14.9999
hhh::	chr6:32157703-32157955(-)$1	252	80	85	14.9999
ma]ee	chr2:10539693-10539961(+)$1	268	227	232	14.9999
444gg	chr17:78237331-78237599(+)$1	268	136	141	14.9999
bbddd	chr21:38512786-38513031(+)$1	245	122	127	14.9999
ddddc	chr21:46855930-46856205(+)$1	275	250	255	14.9999
fffff	chr17:79963634-79963860(+)$1	226	74	79	14.9999
vvbb4	chr3:197243865-197244154(-)$1	289	139	144	14.9999
mmmmc	chr15:28358618-28358861(-)$1	243	154	159	14.9999
qqqqd	chr19:893460-893690(+)$1	230	151	156	14.9999
FFFFF	chr2:128848779-128849056(+)$1	277	213	218	14.9999
dbb[b	chr19:42755897-42756138(-)$1	241	106	111	14.9999
ooogg	chr14:90863424-90863682(+)$1	258	202	207	14.9999
DEEEE	chr13:113356084-113356360(+)$1	276	71	76	14.9999
ddccc	chr10:79580902-79581150(-)$1	248	207	212	14.9999
ppfff	chr15:25321901-25322153(+)$1	252	97	102	14.9999
DDD{B	chr20:31060474-31060737(-)$1	263	36	41	14.9999
tttt=	chr22:48977532-48977852(+)$1	320	290	295	14.9999
dddd3	chr4:79176298-79176559(+)$1	261	187	192	14.9999
DDDKK	chr12:56552049-56552288(+)$1	239	8	13	14.9999
ccc""	chr15:28377204-28377466(-)$1	262	114	119	14.9999
GGGGG	chr21:46845099-46845379(+)$1	280	18	23	14.9999
FFEEE	chr19:19303600-19304011(+)$1	411	6	11	14.9999
HHHHH	chr3:48448190-48448401(-)$1	211	63	68	14.9999
ggggg	chr17:95439-95764(-)$1	325	208	213	14.9999
cccbb	chr9:35712876-35713131(-)$1	255	133	138	14.9999
FFFF:	chr19:44118334-44118651(-)$1	317	266	271	14.9999
55555	chr17:35634750-35634997(-)$1	247	199	204	14.9999
EEEKK	chr19:1416689-1416946(+)$1	257	96	101	14.9999
fffff	chr16:16421913-16422158(+)$1	245	93	98	14.9999
$$$$i	chr10:19620197-19620420(+)$1	223	44	49	14.9999
ttggg	chr9:79946825-79947112(+)$1	287	95	100	14.9999
DDYYD	chr16:70076153-70076389(-)$1	236	219	224	14.9999
cca[d	chr6:32945897-32946149(+)$1	252	39	44	14.9999
EEE}E	chr1:17995419-17995666(+)$1	247	221	226	14.9999
ddlll	chr1:39909017-39909245(+)$1	228	101	106	14.9999
"dddd	chr2:170655293-170655589(+)$1	296	55	60	14.9999
ggccc	chr22:35740110-35740386(+)$1	276	78	83	14.9999
EEEE{	chr3:47098453-47098766(-)$1	313	27	32	14.9999
FFF{C	chr9:137254511-137254737(+)$1	226	44	49	14.9999
d[ddd	chr15:28356966-28357212(-)$1	246	103	108	14.9999
GGG{E	chr14:23564651-23564953(+)$1	302	79	84	14.9999

#DB
..(((	chr5:139908043-139908301(+)$1	1	16	21	14.9999
(((.(	chr19:1408465-1408707(+)$1	1	108	113	14.9999
)))))	chr9:137256015-137256281(+)$1	1	194	199	14.9999
(((((	chr19:1980524-1980771(+)$1	1	161	166	14.9999
....(	chr7:94285765-94285993(+)$1	1	55	60	14.9999
)))..	chr6:32157703-32157955(-)$1	1	80	85	14.9999
.).))	chr2:10539693-10539961(+)$1	1	227	232	14.9999
...))	chr17:78237331-78237599(+)$1	1	136	141	14.9999
(((((	chr21:38512786-38513031(+)$1	1	122	127	14.9999
)))))	chr21:46855930-46856205(+)$1	1	250	255	14.9999
(((((	chr17:79963634-79963860(+)$1	1	74	79	14.9999
..)).	chr3:197243865-197244154(-)$1	1	139	144	14.9999
....)	chr15:28358618-28358861(-)$1	1	154	159	14.9999
....)	chr19:893460-893690(+)$1	1	151	156	14.9999
)))))	chr2:128848779-128849056(+)$1	1	213	218	14.9999
(((.(	chr19:42755897-42756138(-)$1	1	106	111	14.9999
...))	chr14:90863424-90863682(+)$1	1	202	207	14.9999
(((((	chr13:113356084-113356360(+)$1	1	71	76	14.9999
)))))	chr10:79580902-79581150(-)$1	1	207	212	14.9999
..)))	chr15:25321901-25322153(+)$1	1	97	102	14.9999
(((.(	chr20:31060474-31060737(-)$1	1	36	41	14.9999
....)	chr22:48977532-48977852(+)$1	1	290	295	14.9999
)))).	chr4:79176298-79176559(+)$1	1	187	192	14.9999
(((..	chr12:56552049-56552288(+)$1	1	8	13	14.9999
(((..	chr15:28377204-28377466(-)$1	1	114	119	14.9999
(((((	chr21:46845099-46845379(+)$1	1	18	23	14.9999
(((((	chr19:19303600-19304011(+)$1	1	6	11	14.9999
(((((	chr3:48448190-48448401(-)$1	1	63	68	14.9999
)))))	chr17:95439-95764(-)$1	1	208	213	14.9999
(((((	chr9:35712876-35713131(-)$1	1	133	138	14.9999
)))).	chr19:44118334-44118651(-)$1	1	266	271	14.9999
.....	chr17:35634750-35634997(-)$1	1	199	204	14.9999
(((..	chr19:1416689-1416946(+)$1	1	96	101	14.9999
(((((	chr16:16421913-16422158(+)$1	1	93	98	14.9999
....(	chr10:19620197-19620420(+)$1	1	44	49	14.9999
..)))	chr9:79946825-79947112(+)$1	1	95	100	14.9999
))..)	chr16:70076153-70076389(-)$1	1	219	224	14.9999
(((.(	chr6:32945897-32946149(+)$1	1	39	44	14.9999
))).)	chr1:17995419-17995666(+)$1	1	221	226	14.9999
((...	chr1:39909017-39909245(+)$1	1	101	106	14.9999
.((((	chr2:170655293-170655589(+)$1	1	55	60	14.9999
(((((	chr22:35740110-35740386(+)$1	1	78	83	14.9999
((((.	chr3:47098453-47098766(-)$1	1	27	32	14.9999
(((.(	chr9:137254511-137254737(+)$1	1	44	49	14.9999
(.(((	chr15:28356966-28357212(-)$1	1	103	108	14.9999
(((.(	chr14:23564651-23564953(+)$1	1	79	84	14.9999

#PSSM
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	
A : 0.95	a : 0.04	
G : 0.95	g : 0.04	

#score	689.9999999999999
#seq	46
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_CDS_m2_run1.nuc.txt

#NT
GGCA	chr5:139493782-139494104(+)$1	322	2	6	11.9999
GGCA	chr19:18392190-18392415(-)$1	225	178	182	11.9999
GGCA	chr16:28878114-28878410(+)$1	296	80	84	11.9999
GGCA	chr16:24802021-24802339(+)$1	318	233	237	11.9999
GGCA	chr14:24566114-24566358(+)$1	244	83	87	11.9999
GGCA	chr19:11339587-11339918(-)$1	331	55	59	11.9999
GGCA	chr14:24901297-24901621(+)$1	324	54	58	11.9999
GGCA	chr3:49050612-49050868(+)$1	256	171	175	11.9999
GGCA	chr19:46522367-46522729(+)$1	362	300	304	11.9999
ggca	chr9:140323164-140323441(+)$1	277	79	83	11.9999
GGCA	chr14:24901494-24901759(+)$1	265	75	79	11.9999
GGCA	chr13:113863706-113864078(+)$1	372	107	111	11.9999
GGCA	chr14:24901231-24901497(+)$1	266	120	124	11.9999
ggca	chr14:56103819-56104141(+)$1	322	53	57	11.9999
GGCA	chr22:20073340-20073652(+)$1	312	39	43	11.9999
GGCA	chr7:150935375-150935631(+)$1	256	69	73	11.9999
GGCA	chr22:20073982-20074277(+)$1	295	20	24	11.9999
GGCA	chr16:30205869-30206171(+)$1	302	47	51	11.9999
GGCA	chr2:219266989-219267248(+)$1	259	155	159	11.9999
GGCA	chr14:31585381-31585649(-)$1	268	158	162	11.9999
GGCA	chr7:99690876-99691114(-)$1	238	89	93	11.9999
GGCA	chr17:37899048-37899310(+)$1	262	149	153	11.9999
GGCA	chr6:128327053-128327395(-)$1	342	17	21	11.9999
GGCA	chr6:131199262-131199547(-)$1	285	22	26	11.9999
GGCA	chr14:21484882-21485173(-)$1	291	17	21	11.9999
GGCA	chr2:219267724-219267949(+)$1	225	148	152	11.9999
GGCA	chr5:1065479-1065751(-)$1	272	233	237	11.9999
ggCA	chr2:220043013-220043409(+)$1	396	151	155	11.9999
GGCA	chr1:155033707-155034063(+)$1	356	102	106	11.9999
GGCA	chr9:139904664-139905000(-)$1	336	18	22	11.9999
GGCA	chr12:62996868-62997164(+)$1	296	154	158	11.9999
GGCA	chr22:20073863-20074182(+)$1	319	139	143	11.9999
GGCA	chr14:103574564-103574856(+)$1	292	24	28	11.9999
GGCA	chr7:99690914-99691163(-)$1	249	138	142	11.9999
GGCA	chr17:38080316-38080576(-)$1	260	50	54	11.9999
GGCA	chr7:150935657-150935886(+)$1	229	167	171	11.9999
GGCA	chr6:111136129-111136401(-)$1	272	149	153	11.9999
GGCA	chr22:42298833-42299076(+)$1	243	192	196	11.9999
GGCA	chr3:42661364-42661641(+)$1	277	76	80	11.9999
GGCA	chr3:48664362-48664659(-)$1	297	149	153	11.9999
GGCA	chr1:988673-988949(+)$1	276	210	214	11.9999
GGCA	chr17:36760615-36760867(-)$1	252	22	26	11.9999
GGCA	chr17:28444214-28444485(+)$1	271	7	11	11.9999
GGCA	chr12:58217991-58218476(-)$1	485	78	82	11.9999
GGCA	chr12:1909051-1909335(-)$1	284	211	215	11.9999
GGCA	chr7:150935307-150935575(+)$1	268	137	141	11.9999
GGCA	chr22:20073731-20074049(+)$1	318	53	57	11.9999
GGCA	chr2:101437409-101437658(+)$1	249	160	164	11.9999
ggca	chr13:113760895-113761294(+)$1	399	3	7	11.9999
GGCA	chr6:41748002-41748313(+)$1	311	266	270	11.9999
GGCA	chr2:219267615-219267924(+)$1	309	257	261	11.9999
GGCA	chr12:62996647-62996983(+)$1	336	204	208	11.9999
GGCA	chr22:45723787-45724047(+)$1	260	110	114	11.9999
GGCA	chr1:68151570-68151884(+)$1	314	94	98	11.9999
GGCA	chr13:111315268-111315519(-)$1	251	160	164	11.9999
GGCA	chr17:7154457-7154751(-)$1	294	224	228	11.9999
GGCA	chr22:42298876-42299110(+)$1	234	149	153	11.9999
GGCA	chr8:25315648-25315940(-)$1	292	49	53	11.9999
GGCA	chr22:20073583-20073898(+)$1	315	201	205	11.9999
ggca	chr6:170123859-170124127(-)$1	268	30	34	11.9999
GGCA	chr6:91254232-91254531(-)$1	299	224	228	11.9999
GGCA	chr22:20074077-20074344(+)$1	267	136	140	11.9999

#otherMatches

#Struct PSSM
eee:	chr7:100172738-100172979(-)$1	241	85	89	11.9999
DDDD	chr5:139493782-139494104(+)$1	322	2	6	11.9999
ccc]	chr19:18392190-18392415(-)$1	225	178	182	11.9999
oohh	chr16:28878114-28878410(+)$1	296	80	84	11.9999
ddd!	chr16:24802021-24802339(+)$1	318	233	237	11.9999
eee3	chr14:24566114-24566358(+)$1	244	83	87	11.9999
ddd:	chr19:11339587-11339918(-)$1	331	55	59	11.9999
ccco	chr14:24901297-24901621(+)$1	324	54	58	11.9999
eeee	chr3:49050612-49050868(+)$1	256	171	175	11.9999
g:::	chr19:46522367-46522729(+)$1	362	300	304	11.9999
$$$$	chr9:140323164-140323441(+)$1	277	79	83	11.9999
h"""	chr14:24901494-24901759(+)$1	265	75	79	11.9999
DDD{	chr13:113863706-113864078(+)$1	372	107	111	11.9999
ccco	chr14:24901231-24901497(+)$1	266	120	124	11.9999
KCCC	chr14:56103819-56104141(+)$1	322	53	57	11.9999
ggg!	chr22:20073340-20073652(+)$1	312	39	43	11.9999
eeee	chr7:150935375-150935631(+)$1	256	69	73	11.9999
KBB:	chr22:20073982-20074277(+)$1	295	20	24	11.9999
qqqq	chr16:30205869-30206171(+)$1	302	47	51	11.9999
g[ab	chr2:219266989-219267248(+)$1	259	155	159	11.9999
bbdd	chr14:31585381-31585649(-)$1	268	158	162	11.9999
eooo	chr7:99690876-99691114(-)$1	238	89	93	11.9999
f!!c	chr17:37899048-37899310(+)$1	262	149	153	11.9999
dddd	chr6:128327053-128327395(-)$1	342	17	21	11.9999
dddd	chr6:131199262-131199547(-)$1	285	22	26	11.9999
ccc!	chr14:21484882-21485173(-)$1	291	17	21	11.9999
ffff	chr2:219267724-219267949(+)$1	225	148	152	11.9999
CCCC	chr5:1065479-1065751(-)$1	272	233	237	11.9999
hhh:	chr2:220043013-220043409(+)$1	396	151	155	11.9999
ffff	chr1:155033707-155034063(+)$1	356	102	106	11.9999
!!bb	chr9:139904664-139905000(-)$1	336	18	22	11.9999
fff[	chr12:62996868-62997164(+)$1	296	154	158	11.9999
====	chr22:20073863-20074182(+)$1	319	139	143	11.9999
pppp	chr14:103574564-103574856(+)$1	292	24	28	11.9999
eooo	chr7:99690914-99691163(-)$1	249	138	142	11.9999
ddd:	chr17:38080316-38080576(-)$1	260	50	54	11.9999
ddd]	chr7:150935657-150935886(+)$1	229	167	171	11.9999
ibbe	chr6:111136129-111136401(-)$1	272	149	153	11.9999
eeeq	chr22:42298833-42299076(+)$1	243	192	196	11.9999
a22g	chr3:42661364-42661641(+)$1	277	76	80	11.9999
eeee	chr3:48664362-48664659(-)$1	297	149	153	11.9999
DDDD	chr1:988673-988949(+)$1	276	210	214	11.9999
BBMM	chr17:36760615-36760867(-)$1	252	22	26	11.9999
hhh[	chr17:28444214-28444485(+)$1	271	7	11	11.9999
ccc[	chr12:58217991-58218476(-)$1	485	78	82	11.9999
]bb]	chr12:1909051-1909335(-)$1	284	211	215	11.9999
eeee	chr7:150935307-150935575(+)$1	268	137	141	11.9999
D{BB	chr22:20073731-20074049(+)$1	318	53	57	11.9999
gg!!	chr2:101437409-101437658(+)$1	249	160	164	11.9999
:eee	chr13:113760895-113761294(+)$1	399	3	7	11.9999
fffm	chr6:41748002-41748313(+)$1	311	266	270	11.9999
ffff	chr2:219267615-219267924(+)$1	309	257	261	11.9999
====	chr12:62996647-62996983(+)$1	336	204	208	11.9999
ffff	chr22:45723787-45724047(+)$1	260	110	114	11.9999
LDDD	chr1:68151570-68151884(+)$1	314	94	98	11.9999
bb]c	chr13:111315268-111315519(-)$1	251	160	164	11.9999
oooo	chr17:7154457-7154751(-)$1	294	224	228	11.9999
eeeq	chr22:42298876-42299110(+)$1	234	149	153	11.9999
"bb[	chr8:25315648-25315940(-)$1	292	49	53	11.9999
dd!!	chr22:20073583-20073898(+)$1	315	201	205	11.9999
[bbm	chr6:170123859-170124127(-)$1	268	30	34	11.9999
dddd	chr6:91254232-91254531(-)$1	299	224	228	11.9999
DD:e	chr22:20074077-20074344(+)$1	267	136	140	11.9999

#DB
))).	chr7:100172738-100172979(-)$1	1	85	89	11.9999
((((	chr5:139493782-139494104(+)$1	1	2	6	11.9999
))).	chr19:18392190-18392415(-)$1	1	178	182	11.9999
..))	chr16:28878114-28878410(+)$1	1	80	84	11.9999
(((.	chr16:24802021-24802339(+)$1	1	233	237	11.9999
))).	chr14:24566114-24566358(+)$1	1	83	87	11.9999
))).	chr19:11339587-11339918(-)$1	1	55	59	11.9999
(((.	chr14:24901297-24901621(+)$1	1	54	58	11.9999
((((	chr3:49050612-49050868(+)$1	1	171	175	11.9999
)...	chr19:46522367-46522729(+)$1	1	300	304	11.9999
....	chr9:140323164-140323441(+)$1	1	79	83	11.9999
(...	chr14:24901494-24901759(+)$1	1	75	79	11.9999
(((.	chr13:113863706-113864078(+)$1	1	107	111	11.9999
(((.	chr14:24901231-24901497(+)$1	1	120	124	11.9999
.(((	chr14:56103819-56104141(+)$1	1	53	57	11.9999
(((.	chr22:20073340-20073652(+)$1	1	39	43	11.9999
((((	chr7:150935375-150935631(+)$1	1	69	73	11.9999
.((.	chr22:20073982-20074277(+)$1	1	20	24	11.9999
....	chr16:30205869-30206171(+)$1	1	47	51	11.9999
(.((	chr2:219266989-219267248(+)$1	1	155	159	11.9999
))))	chr14:31585381-31585649(-)$1	1	158	162	11.9999
(...	chr7:99690876-99691114(-)$1	1	89	93	11.9999
(..(	chr17:37899048-37899310(+)$1	1	149	153	11.9999
))))	chr6:128327053-128327395(-)$1	1	17	21	11.9999
((((	chr6:131199262-131199547(-)$1	1	22	26	11.9999
(((.	chr14:21484882-21485173(-)$1	1	17	21	11.9999
((((	chr2:219267724-219267949(+)$1	1	148	152	11.9999
))))	chr5:1065479-1065751(-)$1	1	233	237	11.9999
))).	chr2:220043013-220043409(+)$1	1	151	155	11.9999
((((	chr1:155033707-155034063(+)$1	1	102	106	11.9999
..((	chr9:139904664-139905000(-)$1	1	18	22	11.9999
(((.	chr12:62996868-62997164(+)$1	1	154	158	11.9999
))))	chr22:20073863-20074182(+)$1	1	139	143	11.9999
....	chr14:103574564-103574856(+)$1	1	24	28	11.9999
(...	chr7:99690914-99691163(-)$1	1	138	142	11.9999
))).	chr17:38080316-38080576(-)$1	1	50	54	11.9999
))).	chr7:150935657-150935886(+)$1	1	167	171	11.9999
)(((	chr6:111136129-111136401(-)$1	1	149	153	11.9999
(((.	chr22:42298833-42299076(+)$1	1	192	196	11.9999
)..)	chr3:42661364-42661641(+)$1	1	76	80	11.9999
))))	chr3:48664362-48664659(-)$1	1	149	153	11.9999
))))	chr1:988673-988949(+)$1	1	210	214	11.9999
((..	chr17:36760615-36760867(-)$1	1	22	26	11.9999
(((.	chr17:28444214-28444485(+)$1	1	7	11	11.9999
(((.	chr12:58217991-58218476(-)$1	1	78	82	11.9999
.)).	chr12:1909051-1909335(-)$1	1	211	215	11.9999
((((	chr7:150935307-150935575(+)$1	1	137	141	11.9999
(.((	chr22:20073731-20074049(+)$1	1	53	57	11.9999
((..	chr2:101437409-101437658(+)$1	1	160	164	11.9999
.(((	chr13:113760895-113761294(+)$1	1	3	7	11.9999
(((.	chr6:41748002-41748313(+)$1	1	266	270	11.9999
((((	chr2:219267615-219267924(+)$1	1	257	261	11.9999
))))	chr12:62996647-62996983(+)$1	1	204	208	11.9999
))))	chr22:45723787-45724047(+)$1	1	110	114	11.9999
.(((	chr1:68151570-68151884(+)$1	1	94	98	11.9999
)).)	chr13:111315268-111315519(-)$1	1	160	164	11.9999
....	chr17:7154457-7154751(-)$1	1	224	228	11.9999
(((.	chr22:42298876-42299110(+)$1	1	149	153	11.9999
.((.	chr8:25315648-25315940(-)$1	1	49	53	11.9999
((..	chr22:20073583-20073898(+)$1	1	201	205	11.9999
.((.	chr6:170123859-170124127(-)$1	1	30	34	11.9999
))))	chr6:91254232-91254531(-)$1	1	224	228	11.9999
((.(	chr22:20074077-20074344(+)$1	1	136	140	11.9999

#PSSM
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	
C : 0.93	c : 0.06	
A : 0.93	a : 0.06	

#score	755.9999999999994
#seq	63
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_UTR_m2_run2.nuc.txt

#NT
UUUUUCUUUUU	chr4:56461448-56461685(-)$1	237	90	101	18.0943
UUUUUCUCUUC	chr10:121336109-121336373(-)$1	264	27	38	16.9622
GUUUUGUUUUC	chr11:47843214-47843492(-)$1	278	13	24	17.5283
UUUGUUUUAUC	chr18:33749920-33750175(+)$1	255	16	27	16.2075
UUAUUUUCUUC	chr5:94884275-94884526(-)$1	251	89	100	16.5849
UUUUUCUUUUU	chr17:48817555-48817801(+)$1	246	15	26	18.0943
UUUUUUUUUUC	chr8:64081805-64082067(+)$1	262	177	188	24.5094
AUUUUUUUUUC	chr7:148515067-148515323(-)$1	256	44	55	21.0188
AUUUGUUUUUC	chr7:23561312-23561567(-)$1	255	2	13	16.9622
uuuucuuuuuc	chr1:222906335-222906547(+)$1	212	59	70	20.7358
uuuuuuuuucu	chr7:140434429-140434674(-)$1	245	51	62	16.6792
uuuuuuguuug	chr19:8026973-8027222(-)$1	249	5	16	17.1509
ACUUUUUUUUC	chr8:117878885-117879118(-)$1	233	98	109	17.0566
uuuuguuuuuc	chr14:23795140-23795366(+)$1	226	35	46	20.4528
UUUUUUUUGUC	chr3:38539012-38539278(+)$1	266	61	72	20.2641
UUUACUUUUUC	chr1:16892151-16892408(-)$1	257	85	96	16.8679
UUUCUUUUUUA	chr2:170425609-170425868(-)$1	259	90	101	17.3396
GUUUCUUUUUC	chr22:45726365-45726634(+)$1	269	88	99	17.3396
UCUAUUUUUUC	chr4:83275169-83275426(-)$1	257	94	105	16.6792
UAUUUUUCUUC	chr20:3888453-3888733(+)$1	280	99	110	16.3018
UUAUUUUGUUC	chr2:220096507-220096788(+)$1	281	207	218	16.3018
UUUAUGUUUUC	chr3:43743598-43743838(+)$1	240	92	103	17.0566
UUUUUUUUGUA	chr5:179044507-179044759(-)$1	252	53	64	16.9622
UUUUUUUUUUU	chr12:131361369-131361617(+)$1	248	227	238	21.4905
UUAUUUGUUUC	chr22:32880939-32881190(+)$1	251	84	95	16.7735
UAAUUUUUUUC	chr20:57242432-57242686(+)$1	254	80	91	16.6792
UUUUUUUUUUU	chr15:69714546-69714793(+)$1	247	92	103	21.4905
CUUUUUCUUUC	chr14:103801866-103802090(+)$1	224	110	121	17.4339
GUUUUUUUUUC	chr12:62954155-62954413(+)$1	258	90	101	21.1132
UUUUUCUUUUC	chr2:70454801-70455083(-)$1	282	93	104	21.1132
UGUUUUCUUUC	chr6:10931564-10931831(+)$1	267	90	101	16.6792
CUUUUUUUGUC	chr1:70697436-70697718(+)$1	282	61	72	17.0566
UUAUUUCUUUC	chr8:130854106-130854382(-)$1	276	99	110	16.8679
UUCCUUUUUUC	chr6:32943917-32944167(+)$1	250	95	106	16.5849
UUUUUUGUUUA	chr12:69667900-69668188(+)$1	288	252	263	17.2452
CUUUUUUUCUC	chr17:34163034-34163258(+)$1	224	86	97	16.8679
UGUUUUUUUUC	chr11:33163404-33163636(-)$1	232	88	99	20.5471
UUUUAUUCUUC	chr9:95033802-95034065(-)$1	263	95	106	16.2075
CUGUUUUUUUC	chr21:34821044-34821305(-)$1	261	42	53	17.1509
UCUUUGUUUUC	chr12:67704694-67704963(+)$1	269	16	27	16.9622
uuuUUGUUUUU	chr17:45760434-45760702(+)$1	268	111	122	17.9056
UUUGCUUUUUC	chr6:87964257-87964504(+)$1	247	95	106	16.8679
guuuuuuuuug	chr12:53567422-53567696(-)$1	274	3	14	17.7169
uuuucuuuuuc	chr1:222906347-222906584(+)$1	237	47	58	20.7358
UUUGUUUUUUC	chr11:3061025-3061271(-)$1	246	89	100	20.6415
UUUUUCUUUUC	chr11:33182761-33183007(-)$1	246	78	89	21.1132
CUUUUUAUUUC	chrX:79928634-79928885(-)$1	251	70	81	17.1509
uuuuuauuuuu	chr6:99848097-99848307(-)$1	210	81	92	17.6226
UUCUUCUUUUC	chr1:1477222-1477485(-)$1	263	213	224	17.0566
CUUUUUCUUUC	chr14:103801890-103802130(+)$1	240	86	97	17.4339
UUUCUUUUUUA	chr11:85374474-85374730(-)$1	256	85	96	17.3396
uuuuuuuuuuc	chr19:12833201-12833471(-)$1	270	53	64	24.5094

#otherMatches

#Struct PSSM
hhhhhhh22gg	chr9:97221321-97221577(+)$1	256	36	47	17.1509
:::::::::::	chr4:56461448-56461685(-)$1	237	90	101	18.0943
MMDDDDLLLGG	chr10:121336109-121336373(-)$1	264	27	38	16.9622
d::::FFFFFF	chr11:47843214-47843492(-)$1	278	13	24	17.5283
:::hhhhhhhh	chr18:33749920-33750175(+)$1	255	16	27	16.2075
:::::::::::	chr5:94884275-94884526(-)$1	251	89	100	16.5849
iiiiiiii[==	chr17:48817555-48817801(+)$1	246	15	26	18.0943
+++++++++++	chr8:64081805-64082067(+)$1	262	177	188	24.5094
:ffffff[ccc	chr7:148515067-148515323(-)$1	256	44	55	21.0188
:::::::::::	chr7:23561312-23561567(-)$1	255	2	13	16.9622
:::::::::::	chr1:222906335-222906547(+)$1	212	59	70	20.7358
:::::::::::	chr7:140434429-140434674(-)$1	245	51	62	16.6792
:::::::::::	chr19:8026973-8027222(-)$1	249	5	16	17.1509
]bb::::::::	chr8:117878885-117879118(-)$1	233	98	109	17.0566
::::::GGGGG	chr14:23795140-23795366(+)$1	226	35	46	20.4528
MMMMJJJJJJJ	chr3:38539012-38539278(+)$1	266	61	72	20.2641
>>>>>>>>>>>	chr1:16892151-16892408(-)$1	257	85	96	16.8679
ccHHHHHHHH{	chr2:170425609-170425868(-)$1	259	90	101	17.3396
::DDDDLLLFF	chr22:45726365-45726634(+)$1	269	88	99	17.3396
JJJJJJJ:::d	chr4:83275169-83275426(-)$1	257	94	105	16.6792
3dddd]dddd2	chr20:3888453-3888733(+)$1	280	99	110	16.3018
eerrrrrrrrr	chr2:220096507-220096788(+)$1	281	207	218	16.3018
####=======	chr3:43743598-43743838(+)$1	240	92	103	17.0566
uuuuuccc]ff	chr5:179044507-179044759(-)$1	252	53	64	16.9622
qqqqqqdddd]	chr12:131361369-131361617(+)$1	248	227	238	21.4905
:::::::::::	chr22:32880939-32881190(+)$1	251	84	95	16.7735
ee22ggggggg	chr20:57242432-57242686(+)$1	254	80	91	16.6792
^^^^^^^^^^^	chr15:69714546-69714793(+)$1	247	92	103	21.4905
gg&&&&&&&dd	chr14:103801866-103802090(+)$1	224	110	121	17.4339
===========	chr12:62954155-62954413(+)$1	258	90	101	21.1132
4444ccc]ddd	chr2:70454801-70455083(-)$1	282	93	104	21.1132
ee"""ffffff	chr6:10931564-10931831(+)$1	267	90	101	16.6792
BBKKGGGGGGG	chr1:70697436-70697718(+)$1	282	61	72	17.0566
>>>>>>>>>>>	chr8:130854106-130854382(-)$1	276	99	110	16.8679
hhhh:::::::	chr6:32943917-32944167(+)$1	250	95	106	16.5849
333ggggggg]	chr12:69667900-69668188(+)$1	288	252	263	17.2452
GGGGNNNNNEE	chr17:34163034-34163258(+)$1	224	86	97	16.8679
f::::::::::	chr11:33163404-33163636(-)$1	232	88	99	20.5471
###bb[fffff	chr9:95033802-95034065(-)$1	263	95	106	16.2075
vvvvvvvvvvh	chr21:34821044-34821305(-)$1	261	42	53	17.1509
cccccccc[dd	chr12:67704694-67704963(+)$1	269	16	27	16.9622
fffff]=====	chr17:45760434-45760702(+)$1	268	111	122	17.9056
:::iiiiiiii	chr6:87964257-87964504(+)$1	247	95	106	16.8679
DDQQQQQQQQC	chr12:53567422-53567696(-)$1	274	3	14	17.7169
:::::::::::	chr1:222906347-222906584(+)$1	237	47	58	20.7358
eeee:::::::	chr11:3061025-3061271(-)$1	246	89	100	20.6415
66ffffff]gg	chr11:33182761-33183007(-)$1	246	78	89	21.1132
:::::::::::	chrX:79928634-79928885(-)$1	251	70	81	17.1509
neeeee22bb]	chr6:99848097-99848307(-)$1	210	81	92	17.6226
]==========	chr1:1477222-1477485(-)$1	263	213	224	17.0566
gg&&&&&&&dd	chr14:103801890-103802130(+)$1	240	86	97	17.4339
dd]a::::::e	chr11:85374474-85374730(-)$1	256	85	96	17.3396
:::::::::::	chr19:12833201-12833471(-)$1	270	53	64	24.5094

#DB
)))))))..))	chr9:97221321-97221577(+)$1	1	36	47	17.1509
...........	chr4:56461448-56461685(-)$1	1	90	101	18.0943
..((((...((	chr10:121336109-121336373(-)$1	1	27	38	16.9622
)....((((((	chr11:47843214-47843492(-)$1	1	13	24	17.5283
...((((((((	chr18:33749920-33750175(+)$1	1	16	27	16.2075
...........	chr5:94884275-94884526(-)$1	1	89	100	16.5849
((((((((.((	chr17:48817555-48817801(+)$1	1	15	26	18.0943
...........	chr8:64081805-64082067(+)$1	1	177	188	24.5094
.((((((.(((	chr7:148515067-148515323(-)$1	1	44	55	21.0188
...........	chr7:23561312-23561567(-)$1	1	2	13	16.9622
...........	chr1:222906335-222906547(+)$1	1	59	70	20.7358
...........	chr7:140434429-140434674(-)$1	1	51	62	16.6792
...........	chr19:8026973-8027222(-)$1	1	5	16	17.1509
.))........	chr8:117878885-117879118(-)$1	1	98	109	17.0566
......(((((	chr14:23795140-23795366(+)$1	1	35	46	20.4528
....(((((((	chr3:38539012-38539278(+)$1	1	61	72	20.2641
...........	chr1:16892151-16892408(-)$1	1	85	96	16.8679
))((((((((.	chr2:170425609-170425868(-)$1	1	90	101	17.3396
..((((...((	chr22:45726365-45726634(+)$1	1	88	99	17.3396
(((((((...(	chr4:83275169-83275426(-)$1	1	94	105	16.6792
.)))).)))).	chr20:3888453-3888733(+)$1	1	99	110	16.3018
((.........	chr2:220096507-220096788(+)$1	1	207	218	16.3018
....(((((((	chr3:43743598-43743838(+)$1	1	92	103	17.0566
.....))).))	chr5:179044507-179044759(-)$1	1	53	64	16.9622
......)))).	chr12:131361369-131361617(+)$1	1	227	238	21.4905
...........	chr22:32880939-32881190(+)$1	1	84	95	16.7735
))..)))))))	chr20:57242432-57242686(+)$1	1	80	91	16.6792
...........	chr15:69714546-69714793(+)$1	1	92	103	21.4905
((.......((	chr14:103801866-103802090(+)$1	1	110	121	17.4339
)))))))))))	chr12:62954155-62954413(+)$1	1	90	101	21.1132
....))).)))	chr2:70454801-70455083(-)$1	1	93	104	21.1132
((...((((((	chr6:10931564-10931831(+)$1	1	90	101	16.6792
((..(((((((	chr1:70697436-70697718(+)$1	1	61	72	17.0566
...........	chr8:130854106-130854382(-)$1	1	99	110	16.8679
)))).......	chr6:32943917-32944167(+)$1	1	95	106	16.5849
...))))))).	chr12:69667900-69668188(+)$1	1	252	263	17.2452
((((.....((	chr17:34163034-34163258(+)$1	1	86	97	16.8679
)..........	chr11:33163404-33163636(-)$1	1	88	99	20.5471
...((.(((((	chr9:95033802-95034065(-)$1	1	95	106	16.2075
..........)	chr21:34821044-34821305(-)$1	1	42	53	17.1509
((((((((.((	chr12:67704694-67704963(+)$1	1	16	27	16.9622
))))).)))))	chr17:45760434-45760702(+)$1	1	111	122	17.9056
...((((((((	chr6:87964257-87964504(+)$1	1	95	106	16.8679
((........(	chr12:53567422-53567696(-)$1	1	3	14	17.7169
...........	chr1:222906347-222906584(+)$1	1	47	58	20.7358
)))).......	chr11:3061025-3061271(-)$1	1	89	100	20.6415
..)))))).))	chr11:33182761-33183007(-)$1	1	78	89	21.1132
...........	chrX:79928634-79928885(-)$1	1	70	81	17.1509
.)))))..)).	chr6:99848097-99848307(-)$1	1	81	92	17.6226
.))))))))))	chr1:1477222-1477485(-)$1	1	213	224	17.0566
((.......((	chr14:103801890-103802130(+)$1	1	86	97	17.4339
)).)......(	chr11:85374474-85374730(-)$1	1	85	96	17.3396
...........	chr19:12833201-12833471(-)$1	1	53	64	24.5094

#PSSM
U : 0.60	u : 0.15	C : 0.11	G : 0.05	A : 0.05	g : 0.01	
U : 0.67	u : 0.16	G : 0.05	C : 0.05	A : 0.03	
U : 0.67	u : 0.16	A : 0.09	C : 0.03	G : 0.01	
U : 0.67	u : 0.15	G : 0.05	A : 0.05	C : 0.05	
U : 0.75	u : 0.09	C : 0.05	c : 0.03	G : 0.01	g : 0.01	A : 0.01	
U : 0.66	u : 0.13	C : 0.11	G : 0.07	a : 0.01	
U : 0.71	u : 0.13	C : 0.07	G : 0.03	g : 0.01	A : 0.01	
U : 0.75	u : 0.15	C : 0.07	G : 0.01	
U : 0.75	u : 0.15	G : 0.05	A : 0.01	C : 0.01	
U : 0.84	u : 0.13	c : 0.01	
C : 0.66	U : 0.09	c : 0.07	A : 0.07	u : 0.03	g : 0.03	G : 0.01	

#score	964.6603773584901
#seq	53
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_UTR_m3_run1.nuc.txt

#NT
cccuggg	chr11:73106443-73106822(+)$1	379	126	133	17.1904
GCCUGGG	chr1:100732118-100732370(+)$1	252	204	211	13.5396
CCCUGGC	chr19:45562425-45562674(+)$1	249	241	248	12.9841
CCAUGGG	chr8:48511499-48511774(+)$1	275	49	56	12.9047
CCCCGGG	chr11:290439-290705(+)$1	266	61	68	12.9841
UCCUGGG	chr16:89954004-89954226(+)$1	222	105	112	13.4603
CCCAGGG	chr17:48629365-48629641(+)$1	276	107	114	13.4603
CCCUGGC	chr12:56547590-56547885(+)$1	295	48	55	12.9841
CCCUGGG	chrX:48673139-48673356(+)$1	217	173	180	17.1904
CCCUGGG	chr2:130910792-130911043(-)$1	251	135	142	17.1904
CCCUGGG	chr19:13255479-13255741(-)$1	262	176	183	17.1904
CCAUGGG	chr14:24761340-24761605(-)$1	265	110	117	12.9047
ACCUGGG	chr1:236979662-236979944(+)$1	282	250	257	13.3809
CCCUGGG	chr19:45856407-45856653(-)$1	246	43	50	17.1904
CCCUGGA	chr12:53553963-53554197(-)$1	234	34	41	12.9841
CCCUGGG	chr2:234368818-234369079(+)$1	261	218	225	17.1904
UCCUGGG	chr18:47803098-47803332(-)$1	234	125	132	13.4603
UCCUGGG	chr5:150511935-150512162(-)$1	227	145	152	13.4603
CCCUGGA	chr17:79866691-79866961(-)$1	270	171	178	12.9841
CACUGGG	chr9:131771951-131772194(-)$1	243	169	176	13.3015
CCCUGGG	chr9:117050881-117051085(+)$1	204	141	148	17.1904
ACCUGGG	chr12:110023764-110024031(+)$1	267	159	166	13.3809
CACUGGG	chr12:49500628-49500880(-)$1	252	213	220	13.3015
CCCUGGC	chr2:220247786-220248035(-)$1	249	122	129	12.9841
GCCUGGG	chr3:50112618-50112863(+)$1	245	104	111	13.5396
CCCUGGG	chr3:47460124-47460406(-)$1	282	29	36	17.1904
CCUUGGG	chr1:48697116-48697331(+)$1	215	86	93	12.6666
cccaggg	chr11:116657127-116657374(-)$1	247	5	12	13.4603
CCCUGAG	chrX:153278681-153278950(-)$1	269	37	44	12.5873
CUCUGGG	chr17:8170856-8171076(+)$1	220	41	48	13.2222
CCCUGUG	chr22:32009021-32009262(+)$1	241	146	153	12.5079
CCCUGGG	chr11:67378882-67379140(+)$1	258	211	218	17.1904
CCCUGGG	chr3:38164495-38164714(-)$1	219	164	171	17.1904
CCCAGGG	chr22:50686713-50686941(-)$1	228	35	42	13.4603
CUCUGGG	chr17:7127405-7127662(+)$1	257	76	83	13.2222
CCCGGGG	chr6:31939707-31939956(+)$1	249	130	137	12.9841
CCCAGGG	chr17:8167687-8167919(+)$1	232	150	157	13.4603
cccucgg	chr19:39973422-39973717(+)$1	295	42	49	12.5079
CCCUGGG	chr22:22313969-22314206(-)$1	237	49	56	17.1904
CCCAGGG	chr6:3289893-3290113(-)$1	220	184	191	13.4603
GCCUGGG	chr22:38153930-38154214(+)$1	284	27	34	13.5396
UCCUGGG	chr12:57498838-57499059(-)$1	221	26	33	13.4603
ACCUGGG	chr19:1054686-1054915(+)$1	229	48	55	13.3809
CACUGGG	chr11:75160827-75161141(-)$1	314	56	63	13.3015
GCCUGGG	chr20:39802499-39802735(+)$1	236	175	182	13.5396
CCCUGGG	chr17:18009646-18009898(+)$1	252	201	208	17.1904
GCCUGGG	chr6:31759895-31760153(-)$1	258	43	50	13.5396
CCAUGGG	chr3:9799286-9799583(-)$1	297	139	146	12.9047
CCCAGGG	chr17:72861820-72862044(-)$1	224	4	11	13.4603
CUCUGGG	chr12:112228151-112228400(+)$1	249	5	12	13.2222
CCCUGGG	chr11:118919351-118919597(-)$1	246	238	245	17.1904
CCAUGGG	chrX:151130803-151131208(-)$1	405	383	390	12.9047
CCCUGAG	chr3:49139758-49139980(-)$1	222	145	152	12.5873
CCCUGGU	chr2:27721039-27721278(+)$1	239	50	57	12.8253
CCCUAGG	chr16:712191-712433(+)$1	242	22	29	12.5079
CCCAGGG	chr9:117002664-117002867(+)$1	203	44	51	13.4603
CCCUUGG	chr5:134681551-134681820(-)$1	269	144	151	12.5079
CCCUGGG	chr6:31936547-31936756(+)$1	209	110	117	17.1904
CACUGGG	chr16:67211811-67212018(-)$1	207	95	102	13.3015
CACUGGG	chr17:8158303-8158531(+)$1	228	92	99	13.3015
CCCUGGA	chr1:2487964-2488273(+)$1	309	169	176	12.9841
CUCUGGG	chr17:43215063-43215300(+)$1	237	30	37	13.2222

#otherMatches

#Struct PSSM
ellleee	chr9:117050687-117050891(+)$1	204	82	89	17.1904
bb=====	chr11:73106443-73106822(+)$1	379	126	133	17.1904
hhhhhhh	chr1:100732118-100732370(+)$1	252	204	211	13.5396
dd::BB:	chr19:45562425-45562674(+)$1	249	241	248	12.9841
b::::EE	chr8:48511499-48511774(+)$1	275	49	56	12.9047
cccc[ee	chr11:290439-290705(+)$1	266	61	68	12.9841
mffffff	chr16:89954004-89954226(+)$1	222	105	112	13.4603
FFFFFF{	chr17:48629365-48629641(+)$1	276	107	114	13.4603
nndddd:	chr12:56547590-56547885(+)$1	295	48	55	12.9841
bb22eee	chrX:48673139-48673356(+)$1	217	173	180	17.1904
eelllee	chr2:130910792-130911043(-)$1	251	135	142	17.1904
gg::GGG	chr19:13255479-13255741(-)$1	262	176	183	17.1904
{IIIIII	chr14:24761340-24761605(-)$1	265	110	117	12.9047
2======	chr1:236979662-236979944(+)$1	282	250	257	13.3809
FF{CCCL	chr19:45856407-45856653(-)$1	246	43	50	17.1904
bb[a[dd	chr12:53553963-53554197(-)$1	234	34	41	12.9841
bb[eeee	chr2:234368818-234369079(+)$1	261	218	225	17.1904
c333ddd	chr18:47803098-47803332(-)$1	234	125	132	13.4603
FFFFF}B	chr5:150511935-150512162(-)$1	227	145	152	13.4603
bb[ffff	chr17:79866691-79866961(-)$1	270	171	178	12.9841
c]adddd	chr9:131771951-131772194(-)$1	243	169	176	13.3015
meeeee:	chr9:117050881-117051085(+)$1	204	141	148	17.1904
iiiiiii	chr12:110023764-110024031(+)$1	267	159	166	13.3809
333cccc	chr12:49500628-49500880(-)$1	252	213	220	13.3015
]eeeee:	chr2:220247786-220248035(-)$1	249	122	129	12.9841
eeeee==	chr3:50112618-50112863(+)$1	245	104	111	13.5396
:::dddd	chr3:47460124-47460406(-)$1	282	29	36	17.1904
55eeeee	chr1:48697116-48697331(+)$1	215	86	93	12.6666
B{BBCCC	chr11:116657127-116657374(-)$1	247	5	12	13.4603
!ddddbb	chrX:153278681-153278950(-)$1	269	37	44	12.5873
d22cccd	chr17:8170856-8171076(+)$1	220	41	48	13.2222
ddd]bb]	chr22:32009021-32009262(+)$1	241	146	153	12.5079
&&eeeee	chr11:67378882-67379140(+)$1	258	211	218	17.1904
+gggggg	chr3:38164495-38164714(-)$1	219	164	171	17.1904
ooodddd	chr22:50686713-50686941(-)$1	228	35	42	13.4603
OOOOOOG	chr17:7127405-7127662(+)$1	257	76	83	13.2222
(ddddcc	chr6:31939707-31939956(+)$1	249	130	137	12.9841
qddddee	chr17:8167687-8167919(+)$1	232	150	157	13.4603
EEEEEcc	chr19:39973422-39973717(+)$1	295	42	49	12.5079
iiiiiii	chr22:22313969-22314206(-)$1	237	49	56	17.1904
ccc22ff	chr6:3289893-3290113(-)$1	220	184	191	13.4603
EEKKCCC	chr22:38153930-38154214(+)$1	284	27	34	13.5396
FFFFFF{	chr12:57498838-57499059(-)$1	221	26	33	13.4603
"""a[ee	chr19:1054686-1054915(+)$1	229	48	55	13.3809
$$$eeee	chr11:75160827-75161141(-)$1	314	56	63	13.3015
BBCCCZZ	chr20:39802499-39802735(+)$1	236	175	182	13.5396
ogggggg	chr17:18009646-18009898(+)$1	252	201	208	17.1904
[bb[ccc	chr6:31759895-31760153(-)$1	258	43	50	13.5396
#iiiiii	chr3:9799286-9799583(-)$1	297	139	146	12.9047
EEddddb	chr17:72861820-72862044(-)$1	224	4	11	13.4603
:::A{FF	chr12:112228151-112228400(+)$1	249	5	12	13.2222
HHHH}BB	chr11:118919351-118919597(-)$1	246	238	245	17.1904
c333ccc	chrX:151130803-151131208(-)$1	405	383	390	12.9047
ddd333f	chr3:49139758-49139980(-)$1	222	145	152	12.5873
333ccc>	chr2:27721039-27721278(+)$1	239	50	57	12.8253
ggg####	chr16:712191-712433(+)$1	242	22	29	12.5079
:eeeeen	chr9:117002664-117002867(+)$1	203	44	51	13.4603
feeeee:	chr5:134681551-134681820(-)$1	269	144	151	12.5079
ddccc::	chr6:31936547-31936756(+)$1	209	110	117	17.1904
??DDDDg	chr16:67211811-67212018(-)$1	207	95	102	13.3015
ffffffb	chr17:8158303-8158531(+)$1	228	92	99	13.3015
nnnnddd	chr1:2487964-2488273(+)$1	309	169	176	12.9841
ggggggg	chr17:43215063-43215300(+)$1	237	30	37	13.2222

#DB
(...)))	chr9:117050687-117050891(+)$1	1	82	89	17.1904
(((((((	chr11:73106443-73106822(+)$1	1	126	133	17.1904
(((((((	chr1:100732118-100732370(+)$1	1	204	211	13.5396
))..)).	chr19:45562425-45562674(+)$1	1	241	248	12.9841
)....((	chr8:48511499-48511774(+)$1	1	49	56	12.9047
((((.((	chr11:290439-290705(+)$1	1	61	68	12.9841
.))))))	chr16:89954004-89954226(+)$1	1	105	112	13.4603
((((((.	chr17:48629365-48629641(+)$1	1	107	114	13.4603
..)))).	chr12:56547590-56547885(+)$1	1	48	55	12.9841
))..)))	chrX:48673139-48673356(+)$1	1	173	180	17.1904
((...))	chr2:130910792-130911043(-)$1	1	135	142	17.1904
))..)))	chr19:13255479-13255741(-)$1	1	176	183	17.1904
.((((((	chr14:24761340-24761605(-)$1	1	110	117	12.9047
.))))))	chr1:236979662-236979944(+)$1	1	250	257	13.3809
((.(((.	chr19:45856407-45856653(-)$1	1	43	50	17.1904
((.(.((	chr12:53553963-53554197(-)$1	1	34	41	12.9841
((.((((	chr2:234368818-234369079(+)$1	1	218	225	17.1904
)...)))	chr18:47803098-47803332(-)$1	1	125	132	13.4603
))))).)	chr5:150511935-150512162(-)$1	1	145	152	13.4603
((.((((	chr17:79866691-79866961(-)$1	1	171	178	12.9841
).)((((	chr9:131771951-131772194(-)$1	1	169	176	13.3015
.))))).	chr9:117050881-117051085(+)$1	1	141	148	17.1904
(((((((	chr12:110023764-110024031(+)$1	1	159	166	13.3809
...))))	chr12:49500628-49500880(-)$1	1	213	220	13.3015
.))))).	chr2:220247786-220248035(-)$1	1	122	129	12.9841
)))))))	chr3:50112618-50112863(+)$1	1	104	111	13.5396
...((((	chr3:47460124-47460406(-)$1	1	29	36	17.1904
..)))))	chr1:48697116-48697331(+)$1	1	86	93	12.6666
(.(((((	chr11:116657127-116657374(-)$1	1	5	12	13.4603
.((((((	chrX:153278681-153278950(-)$1	1	37	44	12.5873
)..)))(	chr17:8170856-8171076(+)$1	1	41	48	13.2222
))).)).	chr22:32009021-32009262(+)$1	1	146	153	12.5079
..(((((	chr11:67378882-67379140(+)$1	1	211	218	17.1904
.((((((	chr3:38164495-38164714(-)$1	1	164	171	17.1904
...))))	chr22:50686713-50686941(-)$1	1	35	42	13.4603
......(	chr17:7127405-7127662(+)$1	1	76	83	13.2222
.((((((	chr6:31939707-31939956(+)$1	1	130	137	12.9841
.))))))	chr17:8167687-8167919(+)$1	1	150	157	13.4603
(((((((	chr19:39973422-39973717(+)$1	1	42	49	12.5079
(((((((	chr22:22313969-22314206(-)$1	1	49	56	17.1904
)))..))	chr6:3289893-3290113(-)$1	1	184	191	13.4603
((..(((	chr22:38153930-38154214(+)$1	1	27	34	13.5396
((((((.	chr12:57498838-57499059(-)$1	1	26	33	13.4603
...(.((	chr19:1054686-1054915(+)$1	1	48	55	13.3809
...((((	chr11:75160827-75161141(-)$1	1	56	63	13.3015
)))))..	chr20:39802499-39802735(+)$1	1	175	182	13.5396
.))))))	chr17:18009646-18009898(+)$1	1	201	208	17.1904
.((.(((	chr6:31759895-31760153(-)$1	1	43	50	13.5396
.((((((	chr3:9799286-9799583(-)$1	1	139	146	12.9047
(((((((	chr17:72861820-72862044(-)$1	1	4	11	13.4603
...(.((	chr12:112228151-112228400(+)$1	1	5	12	13.2222
)))).))	chr11:118919351-118919597(-)$1	1	238	245	17.1904
)...)))	chrX:151130803-151131208(-)$1	1	383	390	12.9047
)))...)	chr3:49139758-49139980(-)$1	1	145	152	12.5873
...))).	chr2:27721039-27721278(+)$1	1	50	57	12.8253
(((....	chr16:712191-712433(+)$1	1	22	29	12.5079
.(((((.	chr9:117002664-117002867(+)$1	1	44	51	13.4603
)))))).	chr5:134681551-134681820(-)$1	1	144	151	12.5079
)))))..	chr6:31936547-31936756(+)$1	1	110	117	17.1904
..))))(	chr16:67211811-67212018(-)$1	1	95	102	13.3015
)))))))	chr17:8158303-8158531(+)$1	1	92	99	13.3015
....)))	chr1:2487964-2488273(+)$1	1	169	176	12.9841
(((((((	chr17:43215063-43215300(+)$1	1	30	37	13.2222

#PSSM
C : 0.76	G : 0.07	U : 0.06	c : 0.04	A : 0.04	
C : 0.80	A : 0.07	U : 0.06	c : 0.04	
C : 0.87	A : 0.06	c : 0.04	U : 0.01	
U : 0.82	A : 0.09	u : 0.03	C : 0.01	a : 0.01	G : 0.01	
G : 0.92	g : 0.03	c : 0.01	A : 0.01	U : 0.01	
G : 0.90	g : 0.04	A : 0.03	U : 0.01	
G : 0.84	g : 0.04	C : 0.04	A : 0.04	U : 0.01	

#score	889.349206349205
#seq	63
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_UTR_m1_run1.nuc.txt

#NT
UGGGG	chr11:70281295-70281523(+)$1	228	94	99	14.9999
UGGGG	chr12:120565207-120565474(-)$1	267	205	210	14.9999
UGGGG	chr19:55741185-55741450(-)$1	265	27	32	14.9999
UGGGG	chr20:57275975-57276242(+)$1	267	103	108	14.9999
UGGGG	chr14:24028780-24029037(-)$1	257	199	204	14.9999
ugggg	chr14:24105605-24105810(+)$1	205	110	115	14.9999
UGGGG	chr1:1431227-1431524(+)$1	297	118	123	14.9999
UGGGG	chr20:57290378-57290629(+)$1	251	200	205	14.9999
UGGGG	chr20:44994957-44995272(-)$1	315	238	243	14.9999
UGGGG	chr11:47738751-47739028(-)$1	277	150	155	14.9999
UGGGG	chr2:217069809-217070089(+)$1	280	128	133	14.9999
UGGGG	chr9:117062804-117063013(+)$1	209	41	46	14.9999
UGGGG	chr3:9876784-9877053(+)$1	269	213	218	14.9999
ugggg	chr16:90033842-90034157(+)$1	315	54	59	14.9999
UGGGG	chr22:51017754-51018023(-)$1	269	112	117	14.9999
UGGGG	chr17:73623241-73623509(-)$1	268	136	141	14.9999
UGGGG	chr16:89805006-89805216(-)$1	210	114	119	14.9999
UGGGG	chr1:156354605-156354866(+)$1	261	213	218	14.9999
UGGGG	chr16:89805803-89806061(-)$1	258	109	114	14.9999
ugggg	chr14:24105698-24105916(+)$1	218	17	22	14.9999
UGGGG	chr9:116854170-116854427(-)$1	257	15	20	14.9999
UGGGG	chr20:2815948-2816247(-)$1	299	36	41	14.9999
UGGGG	chr3:13357867-13358117(-)$1	250	30	35	14.9999
ugggg	chr3:184103768-184103988(+)$1	220	3	8	14.9999
UGGGG	chr6:31937123-31937377(+)$1	254	18	23	14.9999
ugggg	chr9:117063484-117063696(+)$1	212	30	35	14.9999
UGGGG	chr11:125454321-125454623(+)$1	302	186	191	14.9999
UGGGG	chr7:73007849-73008159(-)$1	310	84	89	14.9999
UGGGG	chr16:88718534-88718812(-)$1	278	15	20	14.9999
UGGGG	chr16:28603662-28603920(-)$1	258	13	18	14.9999
UGGGG	chr16:67862313-67862562(-)$1	249	9	14	14.9999
UGGGG	chr8:145698667-145698920(+)$1	253	127	132	14.9999
UGGGG	chr7:934930-935289(+)$1	359	83	88	14.9999
UGGGG	chr16:88782125-88782362(-)$1	237	35	40	14.9999
UGGGG	chr20:2815902-2816148(-)$1	246	230	235	14.9999
UGGGG	chr19:55602235-55602491(-)$1	256	137	142	14.9999
UGGGG	chr20:60884778-60884990(-)$1	212	23	28	14.9999
UGGGG	chr16:28847798-28848021(+)$1	223	38	43	14.9999
UGGGG	chr2:85618354-85618652(+)$1	298	234	239	14.9999
UGGGG	chr16:31202296-31202532(+)$1	236	93	98	14.9999
UGGGG	chr14:24114439-24114670(+)$1	231	29	34	14.9999
UGGGG	chr19:10795465-10795700(+)$1	235	216	221	14.9999
UGGGG	chr2:239147033-239147352(-)$1	319	205	210	14.9999
UGGGG	chr14:21484863-21485179(-)$1	316	3	8	14.9999
UGGGG	chr14:24114370-24114622(+)$1	252	98	103	14.9999
UGGGG	chr11:7674453-7674765(+)$1	312	192	197	14.9999
UGGGG	chr1:113242994-113243252(+)$1	258	235	240	14.9999
UGGGG	chr19:42799727-42799985(+)$1	258	14	19	14.9999
UGGGG	chr19:13254912-13255158(-)$1	246	58	63	14.9999
UGGGG	chr1:900895-901152(+)$1	257	66	71	14.9999
UGGGG	chr19:46030014-46030271(+)$1	257	83	88	14.9999
ugggg	chr17:54965263-54965562(-)$1	299	22	27	14.9999
UGGGG	chr6:88384792-88385061(-)$1	269	248	253	14.9999
UGGGG	chr19:3578404-3578696(+)$1	292	28	33	14.9999
UGGGG	chr14:73587827-73588074(+)$1	247	197	202	14.9999
UGGGG	chr3:49052709-49052995(+)$1	286	42	47	14.9999
UGGGG	chr20:39803858-39804097(+)$1	239	76	81	14.9999
UGGGG	chr3:49753746-49754009(+)$1	263	172	177	14.9999
UGGGG	chr16:89805189-89805399(-)$1	210	140	145	14.9999
UGGGG	chrX:48830130-48830383(-)$1	253	136	141	14.9999
UGGGG	chr9:117071584-117071796(+)$1	212	131	136	14.9999
UGGGG	chr3:184100999-184101287(+)$1	288	43	48	14.9999
UGGGG	chr19:55602293-55602591(-)$1	298	237	242	14.9999
ugggg	chr14:24105601-24105805(+)$1	204	114	119	14.9999
UGGGG	chr5:6599459-6599732(-)$1	273	102	107	14.9999

#otherMatches

#Struct PSSM
DDDDi	chr19:10505852-10506187(-)$1	335	82	87	14.9999
=bb[e	chr11:70281295-70281523(+)$1	228	94	99	14.9999
f[ggg	chr12:120565207-120565474(-)$1	267	205	210	14.9999
DD{A{	chr19:55741185-55741450(-)$1	265	27	32	14.9999
fffGG	chr20:57275975-57276242(+)$1	267	103	108	14.9999
EEEE?	chr14:24028780-24029037(-)$1	257	199	204	14.9999
55ddd	chr14:24105605-24105810(+)$1	205	110	115	14.9999
llddd	chr1:1431227-1431524(+)$1	297	118	123	14.9999
dddEE	chr20:57290378-57290629(+)$1	251	200	205	14.9999
[bbnn	chr20:44994957-44995272(-)$1	315	238	243	14.9999
fffgg	chr11:47738751-47739028(-)$1	277	150	155	14.9999
:HHHH	chr2:217069809-217070089(+)$1	280	128	133	14.9999
nnnnc	chr9:117062804-117063013(+)$1	209	41	46	14.9999
hhhhh	chr3:9876784-9877053(+)$1	269	213	218	14.9999
d]iii	chr16:90033842-90034157(+)$1	315	54	59	14.9999
LFFFF	chr22:51017754-51018023(-)$1	269	112	117	14.9999
4eeee	chr17:73623241-73623509(-)$1	268	136	141	14.9999
ddddq	chr16:89805006-89805216(-)$1	210	114	119	14.9999
GGGG?	chr1:156354605-156354866(+)$1	261	213	218	14.9999
ggggg	chr16:89805803-89806061(-)$1	258	109	114	14.9999
eeeee	chr14:24105698-24105916(+)$1	218	17	22	14.9999
{CCCC	chr9:116854170-116854427(-)$1	257	15	20	14.9999
dddff	chr20:2815948-2816247(-)$1	299	36	41	14.9999
GGGii	chr3:13357867-13358117(-)$1	250	30	35	14.9999
:ccc[	chr3:184103768-184103988(+)$1	220	3	8	14.9999
JJJJJ	chr6:31937123-31937377(+)$1	254	18	23	14.9999
hhhhh	chr9:117063484-117063696(+)$1	212	30	35	14.9999
=====	chr11:125454321-125454623(+)$1	302	186	191	14.9999
l====	chr7:73007849-73008159(-)$1	310	84	89	14.9999
%ffff	chr16:88718534-88718812(-)$1	278	15	20	14.9999
EFFFF	chr16:28603662-28603920(-)$1	258	13	18	14.9999
:eeee	chr16:67862313-67862562(-)$1	249	9	14	14.9999
EEEEE	chr8:145698667-145698920(+)$1	253	127	132	14.9999
=====	chr7:934930-935289(+)$1	359	83	88	14.9999
$$$$e	chr16:88782125-88782362(-)$1	237	35	40	14.9999
DDDDH	chr20:2815902-2816148(-)$1	246	230	235	14.9999
GGGGG	chr19:55602235-55602491(-)$1	256	137	142	14.9999
d[fff	chr20:60884778-60884990(-)$1	212	23	28	14.9999
cJJJJ	chr16:28847798-28848021(+)$1	223	38	43	14.9999
FFFFF	chr2:85618354-85618652(+)$1	298	234	239	14.9999
f]a55	chr16:31202296-31202532(+)$1	236	93	98	14.9999
eeeee	chr14:24114439-24114670(+)$1	231	29	34	14.9999
CC}AY	chr19:10795465-10795700(+)$1	235	216	221	14.9999
::EEE	chr2:239147033-239147352(-)$1	319	205	210	14.9999
:EEEE	chr14:21484863-21485179(-)$1	316	3	8	14.9999
eeeee	chr14:24114370-24114622(+)$1	252	98	103	14.9999
cccll	chr11:7674453-7674765(+)$1	312	192	197	14.9999
ggggB	chr1:113242994-113243252(+)$1	258	235	240	14.9999
HHHHH	chr19:42799727-42799985(+)$1	258	14	19	14.9999
fffff	chr19:13254912-13255158(-)$1	246	58	63	14.9999
===[a	chr1:900895-901152(+)$1	257	66	71	14.9999
cccqq	chr19:46030014-46030271(+)$1	257	83	88	14.9999
llccc	chr17:54965263-54965562(-)$1	299	22	27	14.9999
hhhhh	chr6:88384792-88385061(-)$1	269	248	253	14.9999
{EEEE	chr19:3578404-3578696(+)$1	292	28	33	14.9999
55eee	chr14:73587827-73588074(+)$1	247	197	202	14.9999
====&	chr3:49052709-49052995(+)$1	286	42	47	14.9999
=====	chr20:39803858-39804097(+)$1	239	76	81	14.9999
ffff2	chr3:49753746-49754009(+)$1	263	172	177	14.9999
ennnn	chr16:89805189-89805399(-)$1	210	140	145	14.9999
A}EEE	chrX:48830130-48830383(-)$1	253	136	141	14.9999
GGGGG	chr9:117071584-117071796(+)$1	212	131	136	14.9999
HHHcc	chr3:184100999-184101287(+)$1	288	43	48	14.9999
qqddd	chr19:55602293-55602591(-)$1	298	237	242	14.9999
55ddd	chr14:24105601-24105805(+)$1	204	114	119	14.9999
fffff	chr5:6599459-6599732(-)$1	273	102	107	14.9999

#DB
(((((	chr19:10505852-10506187(-)$1	1	82	87	14.9999
(((.(	chr11:70281295-70281523(+)$1	1	94	99	14.9999
(.(((	chr12:120565207-120565474(-)$1	1	205	210	14.9999
((.(.	chr19:55741185-55741450(-)$1	1	27	32	14.9999
)))))	chr20:57275975-57276242(+)$1	1	103	108	14.9999
)))).	chr14:24028780-24029037(-)$1	1	199	204	14.9999
..)))	chr14:24105605-24105810(+)$1	1	110	115	14.9999
..)))	chr1:1431227-1431524(+)$1	1	118	123	14.9999
)))))	chr20:57290378-57290629(+)$1	1	200	205	14.9999
.((..	chr20:44994957-44995272(-)$1	1	238	243	14.9999
)))((	chr11:47738751-47739028(-)$1	1	150	155	14.9999
.))))	chr2:217069809-217070089(+)$1	1	128	133	14.9999
....)	chr9:117062804-117063013(+)$1	1	41	46	14.9999
(((((	chr3:9876784-9877053(+)$1	1	213	218	14.9999
).)))	chr16:90033842-90034157(+)$1	1	54	59	14.9999
.((((	chr22:51017754-51018023(-)$1	1	112	117	14.9999
.))))	chr17:73623241-73623509(-)$1	1	136	141	14.9999
((((.	chr16:89805006-89805216(-)$1	1	114	119	14.9999
)))).	chr1:156354605-156354866(+)$1	1	213	218	14.9999
)))))	chr16:89805803-89806061(-)$1	1	109	114	14.9999
)))))	chr14:24105698-24105916(+)$1	1	17	22	14.9999
.((((	chr9:116854170-116854427(-)$1	1	15	20	14.9999
)))))	chr20:2815948-2816247(-)$1	1	36	41	14.9999
(((((	chr3:13357867-13358117(-)$1	1	30	35	14.9999
.(((.	chr3:184103768-184103988(+)$1	1	3	8	14.9999
(((((	chr6:31937123-31937377(+)$1	1	18	23	14.9999
)))))	chr9:117063484-117063696(+)$1	1	30	35	14.9999
(((((	chr11:125454321-125454623(+)$1	1	186	191	14.9999
.))))	chr7:73007849-73008159(-)$1	1	84	89	14.9999
.((((	chr16:88718534-88718812(-)$1	1	15	20	14.9999
(((((	chr16:28603662-28603920(-)$1	1	13	18	14.9999
.((((	chr16:67862313-67862562(-)$1	1	9	14	14.9999
(((((	chr8:145698667-145698920(+)$1	1	127	132	14.9999
)))))	chr7:934930-935289(+)$1	1	83	88	14.9999
....(	chr16:88782125-88782362(-)$1	1	35	40	14.9999
)))))	chr20:2815902-2816148(-)$1	1	230	235	14.9999
)))))	chr19:55602235-55602491(-)$1	1	137	142	14.9999
(.(((	chr20:60884778-60884990(-)$1	1	23	28	14.9999
)((((	chr16:28847798-28848021(+)$1	1	38	43	14.9999
)))))	chr2:85618354-85618652(+)$1	1	234	239	14.9999
).)..	chr16:31202296-31202532(+)$1	1	93	98	14.9999
(((((	chr14:24114439-24114670(+)$1	1	29	34	14.9999
)).).	chr19:10795465-10795700(+)$1	1	216	221	14.9999
..)))	chr2:239147033-239147352(-)$1	1	205	210	14.9999
.((((	chr14:21484863-21485179(-)$1	1	3	8	14.9999
(((((	chr14:24114370-24114622(+)$1	1	98	103	14.9999
(((..	chr11:7674453-7674765(+)$1	1	192	197	14.9999
)))))	chr1:113242994-113243252(+)$1	1	235	240	14.9999
(((((	chr19:42799727-42799985(+)$1	1	14	19	14.9999
(((((	chr19:13254912-13255158(-)$1	1	58	63	14.9999
(((.(	chr1:900895-901152(+)$1	1	66	71	14.9999
(((..	chr19:46030014-46030271(+)$1	1	83	88	14.9999
..)))	chr17:54965263-54965562(-)$1	1	22	27	14.9999
)))))	chr6:88384792-88385061(-)$1	1	248	253	14.9999
.((((	chr19:3578404-3578696(+)$1	1	28	33	14.9999
..)))	chr14:73587827-73588074(+)$1	1	197	202	14.9999
((((.	chr3:49052709-49052995(+)$1	1	42	47	14.9999
(((((	chr20:39803858-39804097(+)$1	1	76	81	14.9999
)))).	chr3:49753746-49754009(+)$1	1	172	177	14.9999
(....	chr16:89805189-89805399(-)$1	1	140	145	14.9999
).)))	chrX:48830130-48830383(-)$1	1	136	141	14.9999
)))))	chr9:117071584-117071796(+)$1	1	131	136	14.9999
(((((	chr3:184100999-184101287(+)$1	1	43	48	14.9999
..)))	chr19:55602293-55602591(-)$1	1	237	242	14.9999
..)))	chr14:24105601-24105805(+)$1	1	114	119	14.9999
(((((	chr5:6599459-6599732(-)$1	1	102	107	14.9999

#PSSM
U : 0.89	u : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	

#score	989.9999999999999
#seq	66
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_UTR_m2_run1.nuc.txt

#NT
GUGGGGGUGGGA	chr14:70238180-70238426(+)$1	246	99	111	18.7500
GGAGGGUUGGGG	chr1:59247165-59247422(-)$1	257	97	109	19.2500
GAAGGGGUGGGU	chr10:74035233-74035520(+)$1	287	272	284	18.5000
GCAGCUGUGGGG	chr21:46644414-46644675(+)$1	261	0	12	16.3333
ggacgggugggg	chr16:67596187-67596451(-)$1	264	58	70	19.2500
GCGGGGGCGAGG	chr6:117996612-117996872(+)$1	260	62	74	17.0833
gggagggugggg	chr19:34287649-34287898(+)$1	249	8	20	19.3333
GCGGUGGAGGGG	chr9:139743349-139743616(+)$1	267	23	35	18.2500
GCGGGGGUGAGG	chr17:37824279-37824595(+)$1	316	92	104	19.8333
agaggggugggg	chr2:54197761-54198043(-)$1	282	61	73	19.7500
GCAGCUGUGGGG	chr21:46644316-46644587(+)$1	271	98	110	16.3333
GCCggggugggg	chr16:447637-447881(+)$1	244	12	24	23.5833
GCCGGGGUCGGG	chr19:1104347-1104709(+)$1	362	85	97	19.6666
gcgggggagggg	chr1:245026275-245026514(-)$1	239	149	161	21.7500
gcaggggagggg	chr2:191513668-191513927(+)$1	259	95	107	21.7500
GUGGGGGUGGGG	chr15:44063542-44063791(+)$1	249	114	126	23.0833
GAAGGGGUGGGG	chr7:5569450-5569692(-)$1	242	41	53	23.0000
GUGGGGGUGGGA	chr14:70238226-70238465(+)$1	239	53	65	18.7500
GCAGUGGGGGGG	chr20:57467335-57467628(+)$1	293	237	249	17.8333
GCAGGGGGAGGG	chr16:31044909-31045190(+)$1	281	115	127	17.0833
gccgcggugggg	chr3:185542677-185542941(-)$1	264	34	46	20.2500
gccggggucggg	chr9:139560093-139560362(+)$1	269	200	212	19.6666
GGCGGGGCGGGG	chr12:109124332-109124592(-)$1	260	15	27	20.4166
GCCGGGGUGGGG	chr19:18547582-18547872(-)$1	290	106	118	23.5833
GAGGGGGUGGGG	chr15:74701947-74702202(-)$1	255	109	121	23.0000
GAGGGGGAGGGG	chr2:61765009-61765292(-)$1	283	37	49	20.4166
GUUGGGGUGGGG	chr8:41787600-41787856(-)$1	256	67	79	21.8333
GGCAGGGUGGGG	chr12:12874168-12874423(+)$1	255	95	107	18.5833
AAUGGGGUGGGG	chr1:52811938-52812196(+)$1	258	60	72	17.5833
GGCGGGGUGGGG	chr5:53180024-53180291(-)$1	267	48	60	23.1666
GCAGGGGGCGGG	chr19:18547993-18548247(-)$1	254	61	73	17.4166
GCAGGGGUGGGG	chr11:120356691-120356962(+)$1	271	78	90	24.3333
GCAGGGGCUGGG	chr1:44170822-44171124(+)$1	302	57	69	17.4166
ccgggggugggg	chr2:183902916-183903198(-)$1	282	108	120	20.1666
GGUGGGGUGGGG	chr17:56167123-56167372(+)$1	249	78	90	22.6666
GGGGUGGUGGGG	chr11:62482472-62482739(-)$1	267	87	99	20.4166
ggggcggcgggg	chr6:15248985-15249254(+)$1	269	75	87	17.8333
gaagaggugggg	chr2:242447651-242447909(-)$1	258	171	183	19.5000
GUGGCGGAGGGG	chr20:57467262-57467497(+)$1	235	198	210	17.1666
GAGGGGGAGGGG	chr6:33172052-33172287(+)$1	235	112	124	20.4166
GUUGGGGCGGGG	chr19:4038352-4038641(+)$1	289	75	87	19.0833
gaggaggagggg	chr2:20550311-20550596(-)$1	285	66	78	16.9166
GCAggggugggg	chr19:7978203-7978516(+)$1	313	188	200	24.3333
gccgggcugggg	chr8:30669835-30670091(-)$1	256	113	125	18.9166
GCAGGGGAGAGG	chr8:101964436-101964710(-)$1	274	71	83	17.2500
GGGGGGGCGGGG	chr19:41119580-41119830(+)$1	250	9	21	21.1666
GGGGGGGUGGGG	chr5:137688305-137688582(+)$1	277	54	66	23.9166
CUCGGGGUGGGG	chr19:1104619-1104865(+)$1	246	73	85	18.1666
ggaggggguggg	chr3:100428662-100428949(+)$1	287	35	47	16.7500
GGCGGGGUCGGG	chr7:77166720-77166992(+)$1	272	24	36	19.2500
GGCGGGGUCGGG	chr7:77166657-77166902(+)$1	245	87	99	19.2500
UUGGGGGUGGGG	chr1:28176889-28177164(+)$1	275	215	227	18.7500
GCGGAGGCGGGG	chr7:5569347-5569623(-)$1	276	91	103	18.0833
GUUGGGAUGGGG	chr19:56185510-56185789(+)$1	279	183	195	17.1666
GGUGGGGUGGGA	chr1:150594888-150595160(-)$1	272	119	131	18.3333
cggggggagggg	chr19:56166190-56166469(+)$1	279	64	76	17.1666
GCAGUGGUGGGG	chr2:70902240-70902503(-)$1	263	125	137	20.8333
ggagAGGUGGGG	chr17:55333777-55334021(+)$1	244	65	77	20.4166
ACAGGGGUGGGG	chr6:29600544-29600832(-)$1	288	15	27	20.1666

#otherMatches

#Struct PSSM
rrrrffffff:f	chr1:213031640-213031908(+)$1	268	37	49	16.0833
0eeeeedddd22	chr14:70238180-70238426(+)$1	246	99	111	18.7500
EEEEEeeeee[e	chr1:59247165-59247422(-)$1	257	97	109	19.2500
:::GGGGGGG::	chr10:74035233-74035520(+)$1	287	272	284	18.5000
HHHHHHHH::::	chr21:46644414-46644675(+)$1	261	0	12	16.3333
:::a[ccc[bbm	chr16:67596187-67596451(-)$1	264	58	70	19.2500
gg333a]a22cc	chr6:117996612-117996872(+)$1	260	62	74	17.0833
BB::DDDD{AMM	chr19:34287649-34287898(+)$1	249	8	20	19.3333
[bb[a[eeeee!	chr9:139743349-139743616(+)$1	267	23	35	18.2500
{JJJJJJJJJJ:	chr17:37824279-37824595(+)$1	316	92	104	19.8333
77777a]ccc]d	chr2:54197761-54198043(-)$1	282	61	73	19.7500
dd]ccc]dddd:	chr21:46644316-46644587(+)$1	271	98	110	16.3333
[bbpppppppbb	chr16:447637-447881(+)$1	244	12	24	23.5833
JJJJJJJJGGGG	chr19:1104347-1104709(+)$1	362	85	97	19.6666
[ammmma]ccc2	chr1:245026275-245026514(-)$1	239	149	161	21.7500
cc[bb[a[a[bb	chr2:191513668-191513927(+)$1	259	95	107	21.7500
??CCCggggggg	chr15:44063542-44063791(+)$1	249	114	126	23.0833
d[bb!!ddddnn	chr7:5569450-5569692(-)$1	242	41	53	23.0000
:ccc[ccc[a[e	chr14:70238226-70238465(+)$1	239	53	65	18.7500
cc:cccuuuuuu	chr20:57467335-57467628(+)$1	293	237	249	17.8333
eeebb[bb"""c	chr16:31044909-31045190(+)$1	281	115	127	17.0833
bbmmmmbb]bb4	chr3:185542677-185542941(-)$1	264	34	46	20.2500
==22a]dddd22	chr9:139560093-139560362(+)$1	269	200	212	19.6666
{BB::ccc[ddd	chr12:109124332-109124592(-)$1	260	15	27	20.4166
gggggg!!a[ii	chr19:18547582-18547872(-)$1	290	106	118	23.5833
!!dddd[fffff	chr15:74701947-74702202(-)$1	255	109	121	23.0000
HHHHBBKKGGGG	chr2:61765009-61765292(-)$1	283	37	49	20.4166
hhhhhhffffff	chr8:41787600-41787856(-)$1	256	67	79	21.8333
3eeeeegggggg	chr12:12874168-12874423(+)$1	255	95	107	18.5833
qqqqqdddd:::	chr1:52811938-52812196(+)$1	258	60	72	17.5833
!!ddddoooooo	chr5:53180024-53180291(-)$1	267	48	60	23.1666
hhhh[ddddlll	chr19:18547993-18548247(-)$1	254	61	73	17.4166
eeeerrrrrrrr	chr11:120356691-120356962(+)$1	271	78	90	24.3333
eeeeeeeee!!b	chr1:44170822-44171124(+)$1	302	57	69	17.4166
dddd:EEEEE}E	chr2:183902916-183903198(-)$1	282	108	120	20.1666
eee####fffff	chr17:56167123-56167372(+)$1	249	78	90	22.6666
2a]bb22bb]ee	chr11:62482472-62482739(-)$1	267	87	99	20.4166
22dddd333===	chr6:15248985-15249254(+)$1	269	75	87	17.8333
aooooooa]hhh	chr2:242447651-242447909(-)$1	258	171	183	19.5000
qqqqqqqa]bb]	chr20:57467262-57467497(+)$1	235	198	210	17.1666
hhhhhhhh::cc	chr6:33172052-33172287(+)$1	235	112	124	20.4166
dddd]dddd]ae	chr19:4038352-4038641(+)$1	289	75	87	19.0833
fff333ddddDD	chr2:20550311-20550596(-)$1	285	66	78	16.9166
cccdddd[cccg	chr19:7978203-7978516(+)$1	313	188	200	24.3333
{CCC{CCCBBKK	chr8:30669835-30670091(-)$1	256	113	125	18.9166
[ccc[azzzzzz	chr8:101964436-101964710(-)$1	274	71	83	17.2500
B{ALLLGGGGGG	chr19:41119580-41119830(+)$1	250	9	21	21.1666
{EEEEE{EEEEE	chr5:137688305-137688582(+)$1	277	54	66	23.9166
cceeeeefffff	chr19:1104619-1104865(+)$1	246	73	85	18.1666
((((((((a[dd	chr3:100428662-100428949(+)$1	287	35	47	16.7500
:DDDD{A{DDDD	chr7:77166720-77166992(+)$1	272	24	36	19.2500
HHHH::::ccc[	chr7:77166657-77166902(+)$1	245	87	99	19.2500
""bb!!eeeee[	chr1:28176889-28177164(+)$1	275	215	227	18.7500
DDFFFFFF{HHH	chr7:5569347-5569623(-)$1	276	91	103	18.0833
dddda22dddd6	chr19:56185510-56185789(+)$1	279	183	195	17.1666
hhheeeeeCCCZ	chr1:150594888-150595160(-)$1	272	119	131	18.3333
e[a''''''''b	chr19:56166190-56166469(+)$1	279	64	76	17.1666
ffffff]dddd2	chr2:70902240-70902503(-)$1	263	125	137	20.8333
d[bb[ffffff#	chr17:55333777-55334021(+)$1	244	65	77	20.4166
[a!!bb[hhhhh	chr6:29600544-29600832(-)$1	288	15	27	20.1666

#DB
....)))))).(	chr1:213031640-213031908(+)$1	1	37	49	16.0833
.)))))))))..	chr14:70238180-70238426(+)$1	1	99	111	18.7500
((((((((((.(	chr1:59247165-59247422(-)$1	1	97	109	19.2500
...)))))))..	chr10:74035233-74035520(+)$1	1	272	284	18.5000
((((((((....	chr21:46644414-46644675(+)$1	1	0	12	16.3333
...(.(((.((.	chr16:67596187-67596451(-)$1	1	58	70	19.2500
))...).)..))	chr6:117996612-117996872(+)$1	1	62	74	17.0833
((..((((.(..	chr19:34287649-34287898(+)$1	1	8	20	19.3333
.((.(.(((((.	chr9:139743349-139743616(+)$1	1	23	35	18.2500
.((((((((((.	chr17:37824279-37824595(+)$1	1	92	104	19.8333
.....).))).)	chr2:54197761-54198043(-)$1	1	61	73	19.7500
)).))).)))).	chr21:46644316-46644587(+)$1	1	98	110	16.3333
.((.......))	chr16:447637-447881(+)$1	1	12	24	23.5833
((((((((((((	chr19:1104347-1104709(+)$1	1	85	97	19.6666
.(....).))).	chr1:245026275-245026514(-)$1	1	149	161	21.7500
((.((.(.(.((	chr2:191513668-191513927(+)$1	1	95	107	21.7500
..)))(((((((	chr15:44063542-44063791(+)$1	1	114	126	23.0833
(.((..((((..	chr7:5569450-5569692(-)$1	1	41	53	23.0000
.(((.(((.(.(	chr14:70238226-70238465(+)$1	1	53	65	18.7500
)).(((......	chr20:57467335-57467628(+)$1	1	237	249	17.8333
(((((.((...(	chr16:31044909-31045190(+)$1	1	115	127	17.0833
((....)).)).	chr3:185542677-185542941(-)$1	1	34	46	20.2500
))..).))))..	chr9:139560093-139560362(+)$1	1	200	212	19.6666
.((..(((.(((	chr12:109124332-109124592(-)$1	1	15	27	20.4166
((((((..(.((	chr19:18547582-18547872(-)$1	1	106	118	23.5833
..((((.(((((	chr15:74701947-74702202(-)$1	1	109	121	23.0000
((((((..((((	chr2:61765009-61765292(-)$1	1	37	49	20.4166
))))))))))))	chr8:41787600-41787856(-)$1	1	67	79	21.8333
.)))))))))))	chr12:12874168-12874423(+)$1	1	95	107	18.5833
.....))))...	chr1:52811938-52812196(+)$1	1	60	72	17.5833
..((((......	chr5:53180024-53180291(-)$1	1	48	60	23.1666
((((.((((...	chr19:18547993-18548247(-)$1	1	61	73	17.4166
((((........	chr11:120356691-120356962(+)$1	1	78	90	24.3333
(((((((((..(	chr1:44170822-44171124(+)$1	1	57	69	17.4166
)))).))))).)	chr2:183902916-183903198(-)$1	1	108	120	20.1666
(((....(((((	chr17:56167123-56167372(+)$1	1	78	90	22.6666
.).))..)).))	chr11:62482472-62482739(-)$1	1	87	99	20.4166
..))))...)))	chr6:15248985-15249254(+)$1	1	75	87	17.8333
(......).)))	chr2:242447651-242447909(-)$1	1	171	183	19.5000
.......).)).	chr20:57467262-57467497(+)$1	1	198	210	17.1666
))))))))..((	chr6:33172052-33172287(+)$1	1	112	124	20.4166
)))).)))).))	chr19:4038352-4038641(+)$1	1	75	87	19.0833
)))...))))((	chr2:20550311-20550596(-)$1	1	66	78	16.9166
)))((((.((((	chr19:7978203-7978516(+)$1	1	188	200	24.3333
.(((.(((((..	chr8:30669835-30670091(-)$1	1	113	125	18.9166
.(((.(......	chr8:101964436-101964710(-)$1	1	71	83	17.2500
(.(...((((((	chr19:41119580-41119830(+)$1	1	9	21	21.1666
.(((((.(((((	chr5:137688305-137688582(+)$1	1	54	66	23.9166
))))))))))))	chr19:1104619-1104865(+)$1	1	73	85	18.1666
........(.((	chr3:100428662-100428949(+)$1	1	35	47	16.7500
.((((.(.((((	chr7:77166720-77166992(+)$1	1	24	36	19.2500
((((....(((.	chr7:77166657-77166902(+)$1	1	87	99	19.2500
..((..(((((.	chr1:28176889-28177164(+)$1	1	215	227	18.7500
((((((((.(((	chr7:5569347-5569623(-)$1	1	91	103	18.0833
)))))..)))).	chr19:56185510-56185789(+)$1	1	183	195	17.1666
))))))))))).	chr1:150594888-150595160(-)$1	1	119	131	18.3333
(.(........(	chr19:56166190-56166469(+)$1	1	64	76	17.1666
)))))).)))).	chr2:70902240-70902503(-)$1	1	125	137	20.8333
(.((.((((((.	chr17:55333777-55334021(+)$1	1	65	77	20.4166
.(..((.(((((	chr6:29600544-29600832(-)$1	1	15	27	20.1666

#PSSM
G : 0.68	g : 0.19	A : 0.03	c : 0.03	a : 0.01	C : 0.01	U : 0.01	
C : 0.30	G : 0.19	U : 0.15	g : 0.11	A : 0.09	c : 0.09	a : 0.03	
A : 0.24	G : 0.24	C : 0.15	a : 0.09	g : 0.09	U : 0.09	c : 0.05	
G : 0.70	g : 0.24	c : 0.01	a : 0.01	A : 0.01	
G : 0.56	g : 0.19	C : 0.06	U : 0.06	c : 0.03	a : 0.03	A : 0.03	
G : 0.70	g : 0.26	U : 0.03	
G : 0.70	g : 0.24	U : 0.01	c : 0.01	A : 0.01	
U : 0.49	u : 0.16	C : 0.09	A : 0.08	a : 0.06	G : 0.05	c : 0.01	g : 0.01	
G : 0.63	g : 0.23	C : 0.06	A : 0.01	c : 0.01	U : 0.01	u : 0.01	
G : 0.68	g : 0.26	A : 0.05	
G : 0.73	g : 0.26	
G : 0.65	g : 0.26	A : 0.05	C : 0.01	U : 0.01	

#score	1177.0000000000002
#seq	60
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_transcript_m1_run2.nuc.txt

#NT
ccccuccucccuccuc	chr19:39664659-39664982(+)$1	323	52	68	23.8510
CCCUCCCAUCCCCCUC	chr6:33232253-33232538(-)$1	285	203	219	22.0425
cccccuccucccccuc	chr1:225702287-225702549(-)$1	262	81	97	26.5106
CCCCUCUCUCCCCUUC	chrX:47034548-47034811(+)$1	263	65	81	22.1489
ccuccuccucccccuc	chr1:27736230-27736585(-)$1	355	231	247	22.8936
CCUCCGCCUCCCGCUC	chr20:328287-328616(+)$1	329	142	158	20.3404
GCCCGGccucccccuc	chr7:917177-917424(+)$1	247	162	178	22.9999
CCCUUCCCUGGCCCUC	chr3:37927603-37927866(+)$1	263	108	124	18.1063
UUCCUCCUUCCUCCUC	chr20:35974310-35974586(+)$1	276	82	98	18.1063
uccccgccucccccuc	chr10:114711360-114711634(+)$1	274	93	109	23.8510
CCCAACCUUCCCCGUC	chr2:27440456-27440747(+)$1	291	101	117	19.7021
ccacucccucccacuc	chr14:103414325-103414602(-)$1	277	85	101	22.5744
CCCUUGCCUCCCACUC	chr6:32138452-32138754(-)$1	302	153	169	22.6808
ccccucccucucucuc	chr9:3532173-3532500(+)$1	327	100	116	22.6808
CCCCUGCUUCCCCCUC	chr19:5237932-5238201(-)$1	269	110	126	29.7021
CCUCUCCAUCCACCUC	chr19:56821160-56821452(-)$1	292	34	50	20.3404
UCCCUUCUCCCCCCAC	chr17:46986117-46986415(+)$1	298	227	243	18.9574
CUCCCCCUUCCCCUUC	chr16:69599836-69600149(+)$1	313	111	127	19.8085
CCCCUGCGCCCCCGUC	chr16:23577124-23577390(+)$1	266	54	70	21.9361
cccuugcuucuccuuc	chr16:85627026-85627353(+)$1	327	102	118	18.4255
ccccuaccaccucccc	chr17:15412482-15412777(-)$1	295	127	143	19.4893
CCCCCGCUCCCCUCCC	chr12:57596543-57596865(+)$1	322	140	156	19.3829
CCCCUGCUAACCCCUC	chr16:69184712-69184976(+)$1	264	113	129	22.5744
gcccugcgucccuccc	chr10:669284-669580(-)$1	296	33	49	18.5319
ccccuccucacccccu	chr1:12655676-12655943(-)$1	267	57	73	16.1914
CCCCUGCCACCCCCAC	chr2:200321731-200321999(-)$1	268	119	135	23.7446
gcuaucccucccccuc	chr3:65877235-65877538(-)$1	303	98	114	18.4255
ccccuuccucccccuc	chr4:3360544-3360833(+)$1	289	117	133	28.6382
CCCGCCCUUCCCACUC	chr3:171395722-171395997(-)$1	275	121	137	20.3404
CCCCUCCUUCCUCCUG	chr17:7751243-7751502(+)$1	259	188	204	21.8297
CCCCUGCGUGCCCGGC	chr11:63846641-63846954(-)$1	313	7	23	17.3617
CCCCGCCUUGCUCCUc	chr9:133359066-133359402(+)$1	336	52	68	19.7021
ccccucccucccccuc	chr7:98029424-98029736(-)$1	312	54	70	30.0212
CCCCUGCGUCCUCACC	chr1:1234974-1235264(-)$1	290	99	115	18.8510
CCCCCGCCACCCCCCC	chr3:171892639-171892902(+)$1	263	75	91	22.4680
CCCCUCCUUCUCCCUC	chr17:36872583-36872873(+)$1	290	135	151	25.8723
ccccauccccacccuc	chr19:45322973-45323223(+)$1	250	49	65	18.9574
CCCCUUCCUGCCUCUC	chr12:56226452-56226755(+)$1	303	250	266	21.4042
UCCCUGCCUCCCACCC	chr2:242694653-242694934(+)$1	281	49	65	20.4468
CCCCUACUACCCCAUC	chr5:139045788-139046094(+)$1	306	147	163	21.5106
ccuccccuuccuccuc	chr2:246438-246735(-)$1	297	97	113	20.7659
ccucuuccucccccuc	chr2:11470775-11471072(-)$1	297	85	101	25.0212
CCCCUGGUGCCCACCC	chr12:132569324-132569615(+)$1	291	141	157	16.1914
CCCCUGUUCCCCCAAC	chr4:3391644-3391995(+)$1	351	206	222	15.9787
ccccacccuccccucc	chr19:5896122-5896393(-)$1	271	132	148	21.6170
CCCCGGCUUCGCCGCC	chr19:54656748-54657028(+)$1	280	20	36	17.0425

#otherMatches

#Struct PSSM
IIIIIIIIPPPPPPPC	chr17:76201847-76202140(+)$1	293	125	141	18.9574
::::::::::::ccc!	chr19:39664659-39664982(+)$1	323	52	68	23.8510
^^^^^^^^^^^^^^^^	chr6:33232253-33232538(-)$1	285	203	219	22.0425
ddd:::::::::::::	chr1:225702287-225702549(-)$1	262	81	97	26.5106
GGNNNNNCCCLLLCCC	chrX:47034548-47034811(+)$1	263	65	81	22.1489
lhhhhhhhh:::::::	chr1:27736230-27736585(-)$1	355	231	247	22.8936
:::::JJJJJJJJJJJ	chr20:328287-328616(+)$1	329	142	158	20.3404
ggggggg:::::::::	chr7:917177-917424(+)$1	247	162	178	22.9999
::::::::ccc####h	chr3:37927603-37927866(+)$1	263	108	124	18.1063
"""bb+++++++++++	chr20:35974310-35974586(+)$1	276	82	98	18.1063
:::::ffffff%%%%%	chr10:114711360-114711634(+)$1	274	93	109	23.8510
::::::::::::annn	chr2:27440456-27440747(+)$1	291	101	117	19.7021
:bb[ggggggg[bb!!	chr14:103414325-103414602(-)$1	277	85	101	22.5744
99bb0000000000ee	chr6:32138452-32138754(-)$1	302	153	169	22.6808
::::::::::::::::	chr9:3532173-3532500(+)$1	327	100	116	22.6808
%%%ccc^^^^^^^^^^	chr19:5237932-5238201(-)$1	269	110	126	29.7021
eeeyyyyyyyyyyyyy	chr19:56821160-56821452(-)$1	292	34	50	20.3404
vvvvvvvdddd22a]c	chr17:46986117-46986415(+)$1	298	227	243	18.9574
eeee::EEEEEDDDDM	chr16:69599836-69600149(+)$1	313	111	127	19.8085
:::::cccmmmmccc:	chr16:23577124-23577390(+)$1	266	54	70	21.9361
ffffff::::::::::	chr16:85627026-85627353(+)$1	327	102	118	18.4255
E{BB{DDDD:::iiii	chr17:15412482-15412777(-)$1	295	127	143	19.4893
===+++++++++++++	chr12:57596543-57596865(+)$1	322	140	156	19.3829
CC::::::::::::::	chr16:69184712-69184976(+)$1	264	113	129	22.5744
cc::CCC:::::::::	chr10:669284-669580(-)$1	296	33	49	18.5319
a22bb55555hhhhhh	chr1:12655676-12655943(-)$1	267	57	73	16.1914
::::::::::::::::	chr2:200321731-200321999(-)$1	268	119	135	23.7446
::::::::::::::::	chr3:65877235-65877538(-)$1	303	98	114	18.4255
::::::::::::::::	chr4:3360544-3360833(+)$1	289	117	133	28.6382
CEEEEE::::::::::	chr3:171395722-171395997(-)$1	275	121	137	20.3404
b[ccc%%%%%%eeeee	chr17:7751243-7751502(+)$1	259	188	204	21.8297
EEEE{CCC{DDDDKKF	chr11:63846641-63846954(-)$1	313	7	23	17.3617
mmmmbb333bb:::::	chr9:133359066-133359402(+)$1	336	52	68	19.7021
::::::::::::::::	chr7:98029424-98029736(-)$1	312	54	70	30.0212
a22ffffffhhhhhhh	chr1:1234974-1235264(-)$1	290	99	115	18.8510
c55555dddd::::::	chr3:171892639-171892902(+)$1	263	75	91	22.4680
ddbb[ffffff!!eee	chr17:36872583-36872873(+)$1	290	135	151	25.8723
^^^^^^^^^^^^^^^^	chr19:45322973-45323223(+)$1	250	49	65	18.9574
000000000bb333dd	chr12:56226452-56226755(+)$1	303	250	266	21.4042
>>>>>>>>>>>>>>>>	chr2:242694653-242694934(+)$1	281	49	65	20.4468
ppeeeee:::::::::	chr5:139045788-139046094(+)$1	306	147	163	21.5106
::::::::::::::::	chr2:246438-246735(-)$1	297	97	113	20.7659
::::::::::::::::	chr2:11470775-11471072(-)$1	297	85	101	25.0212
mmmdddd:::::::::	chr12:132569324-132569615(+)$1	291	141	157	16.1914
BYYDDDD?????HHHH	chr4:3391644-3391995(+)$1	351	206	222	15.9787
++++++++++++++++	chr19:5896122-5896393(-)$1	271	132	148	21.6170
%%%ddddllldddd33	chr19:54656748-54657028(+)$1	280	20	36	17.0425

#DB
((((((((.......(	chr17:76201847-76202140(+)$1	1	125	141	18.9574
............(((.	chr19:39664659-39664982(+)$1	1	52	68	23.8510
................	chr6:33232253-33232538(-)$1	1	203	219	22.0425
))).............	chr1:225702287-225702549(-)$1	1	81	97	26.5106
((.....(((...(((	chrX:47034548-47034811(+)$1	1	65	81	22.1489
.)))))))).......	chr1:27736230-27736585(-)$1	1	231	247	22.8936
.....(((((((((((	chr20:328287-328616(+)$1	1	142	158	20.3404
))))))).........	chr7:917177-917424(+)$1	1	162	178	22.9999
........(((....(	chr3:37927603-37927866(+)$1	1	108	124	18.1063
...((...........	chr20:35974310-35974586(+)$1	1	82	98	18.1063
.....((((((.....	chr10:114711360-114711634(+)$1	1	93	109	23.8510
............(...	chr2:27440456-27440747(+)$1	1	101	117	19.7021
.((.(((((((.((..	chr14:103414325-103414602(-)$1	1	85	101	22.5744
..))..........))	chr6:32138452-32138754(-)$1	1	153	169	22.6808
................	chr9:3532173-3532500(+)$1	1	100	116	22.6808
...(((..........	chr19:5237932-5238201(-)$1	1	110	126	29.7021
(((.............	chr19:56821160-56821452(-)$1	1	34	50	20.3404
.......))))..).)	chr17:46986117-46986415(+)$1	1	227	243	18.9574
))))..(((((((((.	chr16:69599836-69600149(+)$1	1	111	127	19.8085
.....(((....))).	chr16:23577124-23577390(+)$1	1	54	70	21.9361
))))))..........	chr16:85627026-85627353(+)$1	1	102	118	18.4255
(.((.((((...((((	chr17:15412482-15412777(-)$1	1	127	143	19.4893
(((.............	chr12:57596543-57596865(+)$1	1	140	156	19.3829
((..............	chr16:69184712-69184976(+)$1	1	113	129	22.5744
))..(((.........	chr10:669284-669580(-)$1	1	33	49	18.5319
)..)).....))))))	chr1:12655676-12655943(-)$1	1	57	73	16.1914
................	chr2:200321731-200321999(-)$1	1	119	135	23.7446
................	chr3:65877235-65877538(-)$1	1	98	114	18.4255
................	chr4:3360544-3360833(+)$1	1	117	133	28.6382
((((((..........	chr3:171395722-171395997(-)$1	1	121	137	20.3404
(.(((......(((((	chr17:7751243-7751502(+)$1	1	188	204	21.8297
((((.(((.((((..(	chr11:63846641-63846954(-)$1	1	7	23	17.3617
....))...)).....	chr9:133359066-133359402(+)$1	1	52	68	19.7021
................	chr7:98029424-98029736(-)$1	1	54	70	30.0212
)..)))))))))))))	chr1:1234974-1235264(-)$1	1	99	115	18.8510
).....))))......	chr3:171892639-171892902(+)$1	1	75	91	22.4680
((((.((((((..(((	chr17:36872583-36872873(+)$1	1	135	151	25.8723
................	chr19:45322973-45323223(+)$1	1	49	65	18.9574
.........))...))	chr12:56226452-56226755(+)$1	1	250	266	21.4042
................	chr2:242694653-242694934(+)$1	1	49	65	20.4468
..))))).........	chr5:139045788-139046094(+)$1	1	147	163	21.5106
................	chr2:246438-246735(-)$1	1	97	113	20.7659
................	chr2:11470775-11471072(-)$1	1	85	101	25.0212
...)))).........	chr12:132569324-132569615(+)$1	1	141	157	16.1914
)..)))).....))))	chr4:3391644-3391995(+)$1	1	206	222	15.9787
................	chr19:5896122-5896393(-)$1	1	132	148	21.6170
...((((...))))..	chr19:54656748-54657028(+)$1	1	20	36	17.0425

#PSSM
C : 0.55	c : 0.29	U : 0.06	g : 0.04	G : 0.02	u : 0.02	
C : 0.59	c : 0.36	U : 0.04	
C : 0.59	c : 0.25	u : 0.08	U : 0.04	a : 0.02	
C : 0.53	c : 0.31	U : 0.06	A : 0.02	u : 0.02	a : 0.02	G : 0.02	
U : 0.40	u : 0.23	C : 0.12	c : 0.08	G : 0.06	A : 0.04	a : 0.04	
G : 0.31	C : 0.25	c : 0.17	u : 0.10	g : 0.06	U : 0.04	a : 0.02	A : 0.02	
C : 0.55	c : 0.38	U : 0.04	G : 0.02	
U : 0.34	c : 0.27	C : 0.17	u : 0.08	G : 0.06	A : 0.04	g : 0.02	
U : 0.40	u : 0.29	C : 0.10	A : 0.08	c : 0.06	a : 0.02	G : 0.02	
C : 0.51	c : 0.36	G : 0.08	A : 0.02	a : 0.02	
C : 0.55	c : 0.31	G : 0.04	u : 0.04	U : 0.02	a : 0.02	
C : 0.51	c : 0.31	U : 0.08	u : 0.06	A : 0.02	
C : 0.44	c : 0.31	A : 0.08	U : 0.06	u : 0.04	G : 0.02	a : 0.02	
C : 0.42	c : 0.34	G : 0.08	A : 0.06	U : 0.04	u : 0.04	
U : 0.38	u : 0.29	C : 0.14	c : 0.08	A : 0.06	G : 0.02	
C : 0.57	c : 0.38	u : 0.02	G : 0.02	

#score	998.9787234042552
#seq	47
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_UTR_m1_run1.nuc.txt

#NT
GGCCCUG	chr6:167365926-167366137(-)$1	211	183	190	12.9999
GCCCCAG	chr14:23341218-23341472(+)$1	254	5	12	12.8571
AGCCCAG	chr19:47104543-47104797(+)$1	254	230	237	12.9999
GCCCCAG	chr1:9883644-9883937(-)$1	293	60	67	12.8571
GGCACAG	chr3:48636407-48636710(-)$1	303	18	25	12.5714
GGCCCGG	chr20:34541509-34541777(-)$1	268	65	72	13.2857
GGGCCAG	chr6:31238942-31239203(-)$1	261	71	78	12.2142
GGUCCAG	chr17:76970746-76970972(-)$1	226	96	103	12.0714
ggcacag	chr17:7479771-7480030(+)$1	259	24	31	12.5714
AGCCCAG	chr11:71146270-71146571(-)$1	301	272	279	12.9999
GGCCCGG	chr17:7210863-7211127(+)$1	264	249	256	13.2857
GGCGCAG	chr8:22262120-22262376(+)$1	256	29	36	12.4999
GGGCCAG	chr14:24566003-24566264(+)$1	261	178	185	12.2142
GGCCCGG	chr19:1438734-1438994(+)$1	260	8	15	13.2857
GUCCCAG	chr3:133467180-133467399(+)$1	219	189	196	12.8571
CGCCCAG	chr2:21266776-21267006(-)$1	230	119	126	12.7857
GGCCCAA	chr15:72636181-72636528(-)$1	347	59	66	12.3571
GGCUCAG	chr14:21161645-21161902(+)$1	257	146	153	12.6428
GGCCCAG	chr6:31915495-31915720(+)$1	225	118	125	16.7142
GGCCCGG	chr15:90776984-90777258(-)$1	274	14	21	13.2857
AGCCCAG	chr6:13615663-13615924(+)$1	261	42	49	12.9999
GGCCCAU	chr7:148700731-148700982(-)$1	251	142	149	12.4999
GGCCCAG	chr2:96931927-96932324(+)$1	397	304	311	16.7142
UGCCCAG	chr1:1374551-1374798(+)$1	247	20	27	12.7857
GGCCCCG	chr19:8386848-8387077(+)$1	229	42	49	13.1428
GUCCCAG	chr1:230849854-230850123(-)$1	269	97	104	12.8571
ggcccgg	chr20:3767053-3767341(-)$1	288	51	58	13.2857
GGCACAG	chr19:579399-579616(+)$1	217	102	109	12.5714
GGCCCGG	chr19:45349490-45349730(+)$1	240	178	185	13.2857
GACCCAG	chr1:182992687-182992997(+)$1	310	142	149	12.8571
GGCCCAG	chr14:24114357-24114629(+)$1	272	139	146	16.7142
GGCCCAC	chr2:220403964-220404199(-)$1	235	211	218	12.5714
AGCCCAG	chr6:43100102-43100425(+)$1	323	146	153	12.9999
GGCGCAG	chr15:65822762-65823080(+)$1	318	164	171	12.4999
GACCCAG	chr6:44224433-44224697(-)$1	264	163	170	12.8571
GGCCCUG	chr16:3708019-3708325(-)$1	306	177	184	12.9999
GGCCCAG	chr1:169075576-169075852(+)$1	276	98	105	16.7142
CGCCCAG	chr16:88709624-88709956(-)$1	332	59	66	12.7857
GGCCCAC	chr5:135391332-135391595(+)$1	263	65	72	12.5714
GGCCCAG	chr7:75615756-75616022(+)$1	266	150	157	16.7142
GGCCCCG	chr2:209119574-209119847(-)$1	273	207	214	13.1428
GGCCCAG	chr7:137686287-137686620(-)$1	333	146	153	16.7142
GACCCAG	chr6:43099739-43099979(+)$1	240	65	72	12.8571
CGCCCAG	chr17:79477867-79478105(-)$1	238	130	137	12.7857
GGCCCCG	chr19:11546807-11547116(+)$1	309	186	193	13.1428
GGCCCCG	chr19:15229916-15230167(-)$1	251	13	20	13.1428
GGCUCAG	chr3:58155322-58155546(+)$1	224	14	21	12.6428
GUCCCAG	chr17:57738705-57738975(+)$1	270	140	147	12.8571
UGCCCAG	chr7:45928144-45928407(+)$1	263	31	38	12.7857
GUCCCAG	chr3:133467222-133467431(+)$1	209	147	154	12.8571
GGCCCUG	chr6:142623230-142623518(+)$1	288	26	33	12.9999
GGCCCAG	chr2:96874351-96874633(-)$1	282	23	30	16.7142
ggcccgg	chr1:38259671-38259949(+)$1	278	185	192	13.2857
GGCUCAG	chr8:30669972-30670262(-)$1	290	182	189	12.6428
GGCUCAG	chr10:102107134-102107377(+)$1	243	19	26	12.6428
UGCCCAG	chr6:31237014-31237250(-)$1	236	98	105	12.7857
GGCCCAG	chr17:7082555-7082771(-)$1	216	111	118	16.7142
GCCCCAG	chr1:230838741-230838965(-)$1	224	86	93	12.8571
GGCCCAC	chr9:116824857-116825061(-)$1	204	155	162	12.5714
GGCCCAG	chr16:57416226-57416484(+)$1	258	140	147	16.7142
GACCCAG	chr10:54074084-54074384(+)$1	300	48	55	12.8571
GGCCCAU	chr3:197680884-197681110(+)$1	226	52	59	12.4999
GCCCCAG	chr7:75608726-75608961(+)$1	235	192	199	12.8571
GGCCCCG	chr17:75478124-75478402(+)$1	278	192	199	13.1428
GGCCCAC	chr20:2443237-2443459(-)$1	222	60	67	12.5714
GGGCCAG	chr5:179125889-179126126(+)$1	237	23	30	12.2142
AGCCCAG	chr6:119670227-119670474(-)$1	247	120	127	12.9999
GGCCCAG	chr16:66977639-66977924(+)$1	285	54	61	16.7142
AGCCCAG	chr2:62115448-62115739(-)$1	291	186	193	12.9999

#otherMatches

#Struct PSSM
dduuuuu	chr14:95080942-95081164(+)$1	222	105	112	12.4999
dddcccq	chr6:167365926-167366137(-)$1	211	183	190	12.9999
ooooooe	chr14:23341218-23341472(+)$1	254	5	12	12.8571
hhhhh22	chr19:47104543-47104797(+)$1	254	230	237	12.9999
DDDDKKE	chr1:9883644-9883937(-)$1	293	60	67	12.8571
:hhhhhh	chr3:48636407-48636710(-)$1	303	18	25	12.5714
JJJJJdd	chr20:34541509-34541777(-)$1	268	65	72	13.2857
b[ccc[h	chr6:31238942-31239203(-)$1	261	71	78	12.2142
ddddddd	chr17:76970746-76970972(-)$1	226	96	103	12.0714
ldddd::	chr17:7479771-7480030(+)$1	259	24	31	12.5714
CCC||||	chr11:71146270-71146571(-)$1	301	272	279	12.9999
YCCC:::	chr17:7210863-7211127(+)$1	264	249	256	13.2857
BB{EEEE	chr8:22262120-22262376(+)$1	256	29	36	12.4999
[aeeeee	chr14:24566003-24566264(+)$1	261	178	185	12.2142
KDDDD{B	chr19:1438734-1438994(+)$1	260	8	15	13.2857
fff:JJJ	chr3:133467180-133467399(+)$1	219	189	196	12.8571
oobbddd	chr2:21266776-21267006(-)$1	230	119	126	12.7857
DKKBBKK	chr15:72636181-72636528(-)$1	347	59	66	12.3571
ggggggg	chr14:21161645-21161902(+)$1	257	146	153	12.6428
leeeee2	chr6:31915495-31915720(+)$1	225	118	125	16.7142
GGGGGG{	chr15:90776984-90777258(-)$1	274	14	21	13.2857
llcccii	chr6:13615663-13615924(+)$1	261	42	49	12.9999
dlllddd	chr7:148700731-148700982(-)$1	251	142	149	12.4999
dddllld	chr2:96931927-96932324(+)$1	397	304	311	16.7142
mbbgggg	chr1:1374551-1374798(+)$1	247	20	27	12.7857
dddd!!b	chr19:8386848-8387077(+)$1	229	42	49	13.1428
dd[dddd	chr1:230849854-230850123(-)$1	269	97	104	12.8571
ffflllf	chr20:3767053-3767341(-)$1	288	51	58	13.2857
HHH:::f	chr19:579399-579616(+)$1	217	102	109	12.5714
eeecccm	chr19:45349490-45349730(+)$1	240	178	185	13.2857
DDDBB}A	chr1:182992687-182992997(+)$1	310	142	149	12.8571
22bba]f	chr14:24114357-24114629(+)$1	272	139	146	16.7142
YBBZZZD	chr2:220403964-220404199(-)$1	235	211	218	12.5714
c[ccc[b	chr6:43100102-43100425(+)$1	323	146	153	12.9999
333dddd	chr15:65822762-65823080(+)$1	318	164	171	12.4999
ddd]fff	chr6:44224433-44224697(-)$1	264	163	170	12.8571
hhhhhhh	chr16:3708019-3708325(-)$1	306	177	184	12.9999
gggbb[b	chr1:169075576-169075852(+)$1	276	98	105	16.7142
ccFFFFF	chr16:88709624-88709956(-)$1	332	59	66	12.7857
eeeDDDD	chr5:135391332-135391595(+)$1	263	65	72	12.5714
meeeeec	chr7:75615756-75616022(+)$1	266	150	157	16.7142
:ffffff	chr2:209119574-209119847(-)$1	273	207	214	13.1428
pbb22gg	chr7:137686287-137686620(-)$1	333	146	153	16.7142
cccmmmm	chr6:43099739-43099979(+)$1	240	65	72	12.8571
bb$$$$$	chr17:79477867-79478105(-)$1	238	130	137	12.7857
GGGGG:d	chr19:11546807-11547116(+)$1	309	186	193	13.1428
CCC{A{D	chr19:15229916-15230167(-)$1	251	13	20	13.1428
eeeee[d	chr3:58155322-58155546(+)$1	224	14	21	12.6428
fff:::D	chr17:57738705-57738975(+)$1	270	140	147	12.8571
bb4444d	chr7:45928144-45928407(+)$1	263	31	38	12.7857
d4444dd	chr3:133467222-133467431(+)$1	209	147	154	12.8571
fffEEEE	chr6:142623230-142623518(+)$1	288	26	33	12.9999
FFFFFKK	chr2:96874351-96874633(-)$1	282	23	30	16.7142
ccc[eee	chr1:38259671-38259949(+)$1	278	185	192	13.2857
]dddd::	chr8:30669972-30670262(-)$1	290	182	189	12.6428
occc22f	chr10:102107134-102107377(+)$1	243	19	26	12.6428
D{EEEEE	chr6:31237014-31237250(-)$1	236	98	105	12.7857
eee[eee	chr17:7082555-7082771(-)$1	216	111	118	16.7142
eeee22b	chr1:230838741-230838965(-)$1	224	86	93	12.8571
eeeeppp	chr9:116824857-116825061(-)$1	204	155	162	12.5714
cffffff	chr16:57416226-57416484(+)$1	258	140	147	16.7142
FLLLDDD	chr10:54074084-54074384(+)$1	300	48	55	12.8571
>ccc:::	chr3:197680884-197681110(+)$1	226	52	59	12.4999
444dddd	chr7:75608726-75608961(+)$1	235	192	199	12.8571
ddddfff	chr17:75478124-75478402(+)$1	278	192	199	13.1428
gggggg%	chr20:2443237-2443459(-)$1	222	60	67	12.5714
peeeee]	chr5:179125889-179126126(+)$1	237	23	30	12.2142
:dddd[c	chr6:119670227-119670474(-)$1	247	120	127	12.9999
EEE::::	chr16:66977639-66977924(+)$1	285	54	61	16.7142
33bb22c	chr2:62115448-62115739(-)$1	291	186	193	12.9999

#DB
((.....	chr14:95080942-95081164(+)$1	1	105	112	12.4999
((((((.	chr6:167365926-167366137(-)$1	1	183	190	12.9999
......)	chr14:23341218-23341472(+)$1	1	5	12	12.8571
)))))..	chr19:47104543-47104797(+)$1	1	230	237	12.9999
((((..(	chr1:9883644-9883937(-)$1	1	60	67	12.8571
.((((((	chr3:48636407-48636710(-)$1	1	18	25	12.5714
(((((((	chr20:34541509-34541777(-)$1	1	65	72	13.2857
(.(((.(	chr6:31238942-31239203(-)$1	1	71	78	12.2142
))))(((	chr17:76970746-76970972(-)$1	1	96	103	12.0714
.))))..	chr17:7479771-7480030(+)$1	1	24	31	12.5714
)))....	chr11:71146270-71146571(-)$1	1	272	279	12.9999
.)))...	chr17:7210863-7211127(+)$1	1	249	256	13.2857
((.((((	chr8:22262120-22262376(+)$1	1	29	36	12.4999
.((((((	chr14:24566003-24566264(+)$1	1	178	185	12.2142
.((((.(	chr19:1438734-1438994(+)$1	1	8	15	13.2857
))).)))	chr3:133467180-133467399(+)$1	1	189	196	12.8571
..)))))	chr2:21266776-21267006(-)$1	1	119	126	12.7857
(..((..	chr15:72636181-72636528(-)$1	1	59	66	12.3571
)))))))	chr14:21161645-21161902(+)$1	1	146	153	12.6428
.))))).	chr6:31915495-31915720(+)$1	1	118	125	16.7142
((((((.	chr15:90776984-90777258(-)$1	1	14	21	13.2857
..)))))	chr6:13615663-13615924(+)$1	1	42	49	12.9999
(...)))	chr7:148700731-148700982(-)$1	1	142	149	12.4999
(((...)	chr2:96931927-96932324(+)$1	1	304	311	16.7142
.))))))	chr1:1374551-1374798(+)$1	1	20	27	12.7857
((((..(	chr19:8386848-8387077(+)$1	1	42	49	13.1428
((.((((	chr1:230849854-230850123(-)$1	1	97	104	12.8571
(((...)	chr20:3767053-3767341(-)$1	1	51	58	13.2857
(((...(	chr19:579399-579616(+)$1	1	102	109	12.5714
((((((.	chr19:45349490-45349730(+)$1	1	178	185	13.2857
))))).)	chr1:182992687-182992997(+)$1	1	142	149	12.8571
..))).)	chr14:24114357-24114629(+)$1	1	139	146	16.7142
.))...)	chr2:220403964-220404199(-)$1	1	211	218	12.5714
(.(((.(	chr6:43100102-43100425(+)$1	1	146	153	12.9999
...))))	chr15:65822762-65823080(+)$1	1	164	171	12.4999
))).)))	chr6:44224433-44224697(-)$1	1	163	170	12.8571
)))))))	chr16:3708019-3708325(-)$1	1	177	184	12.9999
(((((.(	chr1:169075576-169075852(+)$1	1	98	105	16.7142
))(((((	chr16:88709624-88709956(-)$1	1	59	66	12.7857
)))((((	chr5:135391332-135391595(+)$1	1	65	72	12.5714
.)))))(	chr7:75615756-75616022(+)$1	1	150	157	16.7142
.((((((	chr2:209119574-209119847(-)$1	1	207	214	13.1428
.))..))	chr7:137686287-137686620(-)$1	1	146	153	16.7142
(((....	chr6:43099739-43099979(+)$1	1	65	72	12.8571
((.....	chr17:79477867-79478105(-)$1	1	130	137	12.7857
(((((.(	chr19:11546807-11547116(+)$1	1	186	193	13.1428
(((.(.(	chr19:15229916-15230167(-)$1	1	13	20	13.1428
(((((.(	chr3:58155322-58155546(+)$1	1	14	21	12.6428
)))...(	chr17:57738705-57738975(+)$1	1	140	147	12.8571
))....)	chr7:45928144-45928407(+)$1	1	31	38	12.7857
)....))	chr3:133467222-133467431(+)$1	1	147	154	12.8571
)))((((	chr6:142623230-142623518(+)$1	1	26	33	12.9999
(((((..	chr2:96874351-96874633(-)$1	1	23	30	16.7142
(((.(((	chr1:38259671-38259949(+)$1	1	185	192	13.2857
.))))..	chr8:30669972-30670262(-)$1	1	182	189	12.6428
.)))..)	chr10:102107134-102107377(+)$1	1	19	26	12.6428
(.(((((	chr6:31237014-31237250(-)$1	1	98	105	12.7857
(((.(((	chr17:7082555-7082771(-)$1	1	111	118	16.7142
))))..)	chr1:230838741-230838965(-)$1	1	86	93	12.8571
((((...	chr9:116824857-116825061(-)$1	1	155	162	12.5714
)((((((	chr16:57416226-57416484(+)$1	1	140	147	16.7142
(...(((	chr10:54074084-54074384(+)$1	1	48	55	12.8571
.)))...	chr3:197680884-197681110(+)$1	1	52	59	12.4999
...))))	chr7:75608726-75608961(+)$1	1	192	199	12.8571
(((((((	chr17:75478124-75478402(+)$1	1	192	199	13.1428
((((((.	chr20:2443237-2443459(-)$1	1	60	67	12.5714
.))))).	chr5:179125889-179126126(+)$1	1	23	30	12.2142
.((((.(	chr6:119670227-119670474(-)$1	1	120	127	12.9999
(((....	chr16:66977639-66977924(+)$1	1	54	61	16.7142
..))..)	chr2:62115448-62115739(-)$1	1	186	193	12.9999

#PSSM
G : 0.78	A : 0.08	g : 0.04	C : 0.04	U : 0.04	
G : 0.78	C : 0.05	U : 0.05	A : 0.05	g : 0.04	
C : 0.89	G : 0.04	c : 0.04	U : 0.01	
C : 0.84	U : 0.05	A : 0.02	G : 0.02	c : 0.02	a : 0.01	
C : 0.95	c : 0.04	
A : 0.77	G : 0.07	C : 0.07	U : 0.04	g : 0.02	a : 0.01	
G : 0.84	C : 0.05	U : 0.04	g : 0.04	A : 0.01	

#score	935.9999999999987
#seq	70
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_UTR_m2_run2.nuc.txt

#NT
GCUGAGGC	chr4:144257825-144258092(+)$1	267	227	235	16.0370
GCUGAGGC	chr3:41241470-41241775(+)$1	305	146	154	16.0370
gcuggcgc	chr12:31476966-31477189(-)$1	223	78	86	15.5740
GCUGGGGC	chr7:50860281-50860543(-)$1	262	225	233	20.1111
GCUGGGGG	chr2:172379433-172379694(+)$1	261	68	76	15.8518
GCUGGGGA	chr16:1413696-1413983(-)$1	287	88	96	15.7592
gguggggc	chr11:3013117-3013362(-)$1	245	3	11	15.6666
GCUGGGAC	chr3:195622185-195622431(-)$1	246	15	23	15.7592
GCCGGGGC	chr3:197477209-197477482(+)$1	273	190	198	16.4074
GCUGGAGC	chr17:76116795-76117065(-)$1	270	4	12	15.7592
gcgggggc	chr8:103666215-103666493(-)$1	278	44	52	16.6851
GCAGGGGC	chr8:102217204-102217473(-)$1	269	96	104	16.3148
gcgggggc	chr10:49514946-49515223(+)$1	277	54	62	16.6851
GGUGGGGC	chr17:39942147-39942405(-)$1	258	47	55	15.6666
gcugcggc	chr17:79679324-79679578(+)$1	254	59	67	16.0370
GCUGGGGA	chr1:46152016-46152280(-)$1	264	137	145	15.7592
GCUGGGGC	chr7:1490062-1490290(-)$1	228	139	147	20.1111
gcgggggc	chr19:15443000-15443250(-)$1	250	120	128	16.6851
GCUGGGGC	chr16:47177416-47177702(-)$1	286	225	233	20.1111
GCUGGGGC	chr6:74230378-74230651(-)$1	273	129	137	20.1111
GCGGGGGC	chr7:1577660-1577901(+)$1	241	230	238	16.6851
GCUGGGUC	chr4:174255241-174255496(-)$1	255	209	217	15.6666
GCUgcggc	chr1:21112956-21113240(-)$1	284	36	44	16.0370
GCAGGGGC	chr4:1377771-1378031(+)$1	260	133	141	16.3148
ACUggggc	chr11:70116774-70117047(+)$1	273	95	103	15.5740
GCCGGGGC	chr5:179248465-179248711(+)$1	246	3	11	16.4074
GCUCGGGC	chr12:93964937-93965207(+)$1	270	36	44	15.5740
GCUGGGCC	chr11:14379832-14380091(-)$1	259	95	103	15.7592
GCGGGGGC	chr1:1189844-1190084(-)$1	240	176	184	16.6851
gcuggggc	chr7:157130119-157130354(+)$1	235	41	49	20.1111
GCUGGAGC	chr19:1878602-1878827(-)$1	225	120	128	15.7592
GGUGGGGC	chr19:18547930-18548204(-)$1	274	216	224	15.6666
GCUGGGGC	chr2:242254706-242254964(-)$1	258	174	182	20.1111
GCUGCGGC	chr15:74725783-74726056(-)$1	273	174	182	16.0370
GCUGAGGC	chr19:3637191-3637445(-)$1	254	169	177	16.0370
GCUGGGGC	chr10:5726927-5727170(+)$1	243	26	34	20.1111
CCUGGGGC	chr10:43892090-43892296(-)$1	206	69	77	15.7592
gcuguggc	chr19:1883515-1883766(-)$1	251	38	46	15.8518
CCUGGGGC	chr19:1473815-1474056(-)$1	241	26	34	15.7592
GCUGGGAC	chr18:72920187-72920442(-)$1	255	92	100	15.7592
GCUGGGGC	chr22:50050306-50050543(-)$1	237	162	170	20.1111
CCUGGGGC	chr4:1723427-1723689(+)$1	262	77	85	15.7592
GCUGGAGC	chr17:76116875-76117132(-)$1	257	71	79	15.7592
gcuggggg	chr12:122237930-122238158(-)$1	228	172	180	15.8518
GCUUGGGC	chr2:200322545-200322805(-)$1	260	200	208	15.4814
GCGGGGGC	chr16:53164973-53165243(+)$1	270	100	108	16.6851
GCUGGGGC	chr3:9851546-9851804(+)$1	258	185	193	20.1111
GCUGGGGC	chr20:36151105-36151484(-)$1	379	314	322	20.1111
GCUGGGGC	chr11:804904-805169(-)$1	265	101	109	20.1111
GCUGGGCC	chr12:76477608-76477876(-)$1	268	183	191	15.7592
GCUCGGGC	chr4:2471457-2471789(+)$1	332	163	171	15.5740
GCUGGGGC	chr17:79253308-79253599(-)$1	291	95	103	20.1111
GCUGGGGG	chr17:79879777-79880032(-)$1	255	99	107	15.8518

#otherMatches

#Struct PSSM
gggfffff	chr1:154193655-154193948(+)$1	293	83	91	16.4074
[bb[dddd	chr4:144257825-144258092(+)$1	267	227	235	16.0370
e22ccc]a	chr3:41241470-41241775(+)$1	305	146	154	16.0370
oggggggg	chr12:31476966-31477189(-)$1	223	78	86	15.5740
dd[ccc[c	chr7:50860281-50860543(-)$1	262	225	233	20.1111
BBeeeee[	chr2:172379433-172379694(+)$1	261	68	76	15.8518
eee22ddd	chr16:1413696-1413983(-)$1	287	88	96	15.7592
oooooobb	chr11:3013117-3013362(-)$1	245	3	11	15.6666
rrrrrrrb	chr3:195622185-195622431(-)$1	246	15	23	15.7592
ddcccbb!	chr3:197477209-197477482(+)$1	273	190	198	16.4074
FF:hhhhh	chr17:76116795-76117065(-)$1	270	4	12	15.7592
ddmmmmdd	chr8:103666215-103666493(-)$1	278	44	52	16.6851
DDDMMMMB	chr8:102217204-102217473(-)$1	269	96	104	16.3148
eeeggggg	chr10:49514946-49515223(+)$1	277	54	62	16.6851
JJJJJJJJ	chr17:39942147-39942405(-)$1	258	47	55	15.6666
]eeeee]e	chr17:79679324-79679578(+)$1	254	59	67	16.0370
ccc]bb]a	chr1:46152016-46152280(-)$1	264	137	145	15.7592
========	chr7:1490062-1490290(-)$1	228	139	147	20.1111
FF:ccc[b	chr19:15443000-15443250(-)$1	250	120	128	16.6851
IIIIIIIZ	chr16:47177416-47177702(-)$1	286	225	233	20.1111
ff[cccgg	chr6:74230378-74230651(-)$1	273	129	137	20.1111
GGGGGFFF	chr7:1577660-1577901(+)$1	241	230	238	16.6851
eeeee[cc	chr4:174255241-174255496(-)$1	255	209	217	15.6666
b!!dddd[	chr1:21112956-21113240(-)$1	284	36	44	16.0370
bbpppppp	chr4:1377771-1378031(+)$1	260	133	141	16.3148
lggggggg	chr11:70116774-70117047(+)$1	273	95	103	15.5740
FFFFF{BB	chr5:179248465-179248711(+)$1	246	3	11	16.4074
nnneeeee	chr12:93964937-93965207(+)$1	270	36	44	15.5740
fff[ccco	chr11:14379832-14380091(-)$1	259	95	103	15.7592
dddddddd	chr1:1189844-1190084(-)$1	240	176	184	16.6851
gggggg]d	chr7:157130119-157130354(+)$1	235	41	49	20.1111
eeeee[cc	chr19:1878602-1878827(-)$1	225	120	128	15.7592
ggg:::CC	chr19:18547930-18548204(-)$1	274	216	224	15.6666
oooobbbb	chr2:242254706-242254964(-)$1	258	174	182	20.1111
eee]a]cc	chr15:74725783-74726056(-)$1	273	174	182	16.0370
FFFF:ddd	chr19:3637191-3637445(-)$1	254	169	177	16.0370
#a[fffff	chr10:5726927-5727170(+)$1	243	26	34	20.1111
###bbooo	chr10:43892090-43892296(-)$1	206	69	77	15.7592
ffff:::F	chr19:1883515-1883766(-)$1	251	38	46	15.8518
IIIIIIII	chr19:1473815-1474056(-)$1	241	26	34	15.7592
ffffflll	chr18:72920187-72920442(-)$1	255	92	100	15.7592
###bb[cc	chr22:50050306-50050543(-)$1	237	162	170	20.1111
mmmggggg	chr4:1723427-1723689(+)$1	262	77	85	15.7592
dd:hhhhh	chr17:76116875-76117132(-)$1	257	71	79	15.7592
}BB}HHHH	chr12:122237930-122238158(-)$1	228	172	180	15.8518
44dddddd	chr2:200322545-200322805(-)$1	260	200	208	15.4814
DDDD}EEE	chr16:53164973-53165243(+)$1	270	100	108	16.6851
ccceeeee	chr3:9851546-9851804(+)$1	258	185	193	20.1111
ff:bbccc	chr20:36151105-36151484(-)$1	379	314	322	20.1111
gbb]dddd	chr11:804904-805169(-)$1	265	101	109	20.1111
DDDZZZCC	chr12:76477608-76477876(-)$1	268	183	191	15.7592
A}HHHHHH	chr4:2471457-2471789(+)$1	332	163	171	15.5740
hhhhhddd	chr17:79253308-79253599(-)$1	291	95	103	20.1111
ddpppppp	chr17:79879777-79880032(-)$1	255	99	107	15.8518

#DB
))))))))	chr1:154193655-154193948(+)$1	1	83	91	16.4074
.((.((((	chr4:144257825-144258092(+)$1	1	227	235	16.0370
)..))).)	chr3:41241470-41241775(+)$1	1	146	154	16.0370
.)))))))	chr12:31476966-31477189(-)$1	1	78	86	15.5740
((.(((.(	chr7:50860281-50860543(-)$1	1	225	233	20.1111
(((((((.	chr2:172379433-172379694(+)$1	1	68	76	15.8518
)))..)))	chr16:1413696-1413983(-)$1	1	88	96	15.7592
......))	chr11:3013117-3013362(-)$1	1	3	11	15.6666
.......)	chr3:195622185-195622431(-)$1	1	15	23	15.7592
)))))((.	chr3:197477209-197477482(+)$1	1	190	198	16.4074
((.(((((	chr17:76116795-76117065(-)$1	1	4	12	15.7592
((....))	chr8:103666215-103666493(-)$1	1	44	52	16.6851
(((....(	chr8:102217204-102217473(-)$1	1	96	104	16.3148
((((((((	chr10:49514946-49515223(+)$1	1	54	62	16.6851
((((((((	chr17:39942147-39942405(-)$1	1	47	55	15.6666
.))))).)	chr17:79679324-79679578(+)$1	1	59	67	16.0370
))).)).)	chr1:46152016-46152280(-)$1	1	137	145	15.7592
((((((((	chr7:1490062-1490290(-)$1	1	139	147	20.1111
((.(((.(	chr19:15443000-15443250(-)$1	1	120	128	16.6851
))))))).	chr16:47177416-47177702(-)$1	1	225	233	20.1111
((.(((((	chr6:74230378-74230651(-)$1	1	129	137	20.1111
))))))))	chr7:1577660-1577901(+)$1	1	230	238	16.6851
(((((.((	chr4:174255241-174255496(-)$1	1	209	217	15.6666
(..((((.	chr1:21112956-21113240(-)$1	1	36	44	16.0370
((......	chr4:1377771-1378031(+)$1	1	133	141	16.3148
.)))))))	chr11:70116774-70117047(+)$1	1	95	103	15.5740
(((((.((	chr5:179248465-179248711(+)$1	1	3	11	16.4074
...)))))	chr12:93964937-93965207(+)$1	1	36	44	15.5740
(((.(((.	chr11:14379832-14380091(-)$1	1	95	103	15.7592
((((((((	chr1:1189844-1190084(-)$1	1	176	184	16.6851
)))))).)	chr7:157130119-157130354(+)$1	1	41	49	20.1111
(((((.((	chr19:1878602-1878827(-)$1	1	120	128	15.7592
)))...))	chr19:18547930-18548204(-)$1	1	216	224	15.6666
....))))	chr2:242254706-242254964(-)$1	1	174	182	20.1111
))).).))	chr15:74725783-74726056(-)$1	1	174	182	16.0370
)))).(((	chr19:3637191-3637445(-)$1	1	169	177	16.0370
.(.(((((	chr10:5726927-5727170(+)$1	1	26	34	20.1111
...((...	chr10:43892090-43892296(-)$1	1	69	77	15.7592
))))...(	chr19:1883515-1883766(-)$1	1	38	46	15.8518
((((((((	chr19:1473815-1474056(-)$1	1	26	34	15.7592
(((((...	chr18:72920187-72920442(-)$1	1	92	100	15.7592
...((.((	chr22:50050306-50050543(-)$1	1	162	170	20.1111
...)))))	chr4:1723427-1723689(+)$1	1	77	85	15.7592
)).(((((	chr17:76116875-76117132(-)$1	1	71	79	15.7592
.)).))))	chr12:122237930-122238158(-)$1	1	172	180	15.8518
..))))((	chr2:200322545-200322805(-)$1	1	200	208	15.4814
)))).)))	chr16:53164973-53165243(+)$1	1	100	108	16.6851
))))))))	chr3:9851546-9851804(+)$1	1	185	193	20.1111
)).(((((	chr20:36151105-36151484(-)$1	1	314	322	20.1111
))).))))	chr11:804904-805169(-)$1	1	101	109	20.1111
)))...))	chr12:76477608-76477876(-)$1	1	183	191	15.7592
).))))))	chr4:2471457-2471789(+)$1	1	163	171	15.5740
))))))))	chr17:79253308-79253599(-)$1	1	95	103	20.1111
((......	chr17:79879777-79880032(-)$1	1	99	107	15.8518

#PSSM
G : 0.75	g : 0.16	C : 0.05	A : 0.01	
C : 0.79	c : 0.14	G : 0.03	g : 0.01	
U : 0.68	u : 0.11	C : 0.05	g : 0.05	G : 0.05	A : 0.03	
G : 0.74	g : 0.20	C : 0.03	U : 0.01	
G : 0.72	g : 0.14	A : 0.05	c : 0.03	C : 0.01	u : 0.01	
G : 0.74	g : 0.18	A : 0.05	c : 0.01	
G : 0.70	g : 0.20	A : 0.03	C : 0.03	U : 0.01	
C : 0.72	c : 0.18	G : 0.03	A : 0.03	g : 0.01	

#score	912.4814814814807
#seq	54
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_transcript_m1_run1.nuc.txt

#NT
AGAG	chr17:79964220-79964455(+)$1	235	57	61	11.9999
AGAG	chr3:186504423-186504632(+)$1	209	3	7	11.9999
AGAG	chr3:197243781-197244066(-)$1	285	139	143	11.9999
AGAG	chr19:33949945-33950234(-)$1	289	112	116	11.9999
agag	chr19:15754219-15754484(+)$1	265	81	85	11.9999
AGAG	chr12:123994385-123994676(-)$1	291	23	27	11.9999
AGAG	chr16:85838465-85838808(+)$1	343	89	93	11.9999
agag	chr7:157568590-157568816(-)$1	226	11	15	11.9999
AGAG	chr14:50235029-50235305(+)$1	276	20	24	11.9999
AGAG	chr11:68084435-68084715(+)$1	280	233	237	11.9999
AGAG	chr1:8651552-8651798(-)$1	246	53	57	11.9999
agag	chr11:76594356-76594564(+)$1	208	151	155	11.9999
AGAG	chr17:94349-94627(-)$1	278	33	37	11.9999
AGAG	chrM:1441-1652(+)$1	211	4	8	11.9999
agag	chr4:39299116-39299359(-)$1	243	70	74	11.9999
AGAG	chr16:81490343-81490564(+)$1	221	0	4	11.9999
AGAG	chr3:186504455-186504661(+)$1	206	81	85	11.9999
AGAG	chr11:125472097-125472411(+)$1	314	279	283	11.9999
AGAG	chr16:81499130-81499397(+)$1	267	99	103	11.9999
AGAG	chr17:165420-165698(-)$1	278	122	126	11.9999
AGAG	chr17:164477-164717(-)$1	240	37	41	11.9999
AGAG	chr9:137228725-137228976(+)$1	251	176	180	11.9999
AGAG	chr17:4849841-4850089(-)$1	248	113	117	11.9999
AGAG	chr3:52722819-52723070(+)$1	251	47	51	11.9999
AGAG	chr3:65880829-65881090(-)$1	261	86	90	11.9999
agag	chr7:157568555-157568790(-)$1	235	3	7	11.9999
AGAG	chr3:186504432-186504636(+)$1	204	104	108	11.9999
AGAG	chrM:1454-1664(+)$1	210	95	99	11.9999
AGAG	chr3:186504485-186504698(+)$1	213	51	55	11.9999
AGAG	chr10:102122548-102122784(+)$1	236	77	81	11.9999
agag	chrX:68892277-68892482(+)$1	205	42	46	11.9999
AGAG	chr3:197243866-197244164(-)$1	298	20	24	11.9999
agag	chr19:23505240-23505525(-)$1	285	1	5	11.9999
AGAG	chr11:62300156-62300416(-)$1	260	145	149	11.9999
AGAG	chrM:1452-1654(+)$1	202	97	101	11.9999
AGAG	chrX:132669918-132670156(-)$1	238	134	138	11.9999
AGAG	chr22:35740147-35740478(+)$1	331	218	222	11.9999
AGAG	chr17:164426-164677(-)$1	251	57	61	11.9999
AGAG	chrX:153063683-153063964(+)$1	281	185	189	11.9999
AGAG	chr3:186504419-186504623(+)$1	204	7	11	11.9999
AGAG	chr3:160232595-160232807(-)$1	212	114	118	11.9999
AGAG	chr1:173835915-173836165(-)$1	250	77	81	11.9999
AGAG	chr3:53870328-53870585(-)$1	257	7	11	11.9999
agag	chr16:50630572-50630823(+)$1	251	79	83	11.9999
AGAG	chr3:186504408-186504612(+)$1	204	18	22	11.9999
agag	chr17:18965284-18965549(+)$1	265	2	6	11.9999
AGAG	chr17:75212402-75212697(+)$1	295	287	291	11.9999
AGAG	chr14:94908788-94909044(-)$1	256	55	59	11.9999
AGAG	chr17:165316-165585(-)$1	269	9	13	11.9999
AGAG	chr16:50583734-50583987(+)$1	253	84	88	11.9999
agag	chr19:23507649-23507906(-)$1	257	162	166	11.9999
aGAG	chr19:23507344-23507627(-)$1	283	11	15	11.9999
AGAG	chr4:83816906-83817165(-)$1	259	34	38	11.9999
aGAG	chr19:23507461-23507708(-)$1	247	92	96	11.9999
AGAG	chrM:1425-1641(+)$1	216	15	19	11.9999
AGAG	chr9:33112319-33112585(-)$1	266	118	122	11.9999
AGAG	chr16:81547155-81547394(+)$1	239	143	147	11.9999
AGAG	chr3:186504436-186504642(+)$1	206	100	104	11.9999
AGAG	chr3:41274968-41275211(+)$1	243	197	201	11.9999
agag	chr3:186794103-186794344(+)$1	241	137	141	11.9999
agag	chrX:68892267-68892477(+)$1	210	52	56	11.9999
AGAG	chr3:197245910-197246193(-)$1	283	26	30	11.9999
AGAG	chr22:35738301-35738595(+)$1	294	258	262	11.9999
AGAG	chrX:132669837-132670063(-)$1	226	41	45	11.9999
AGAG	chr14:21731679-21731902(-)$1	223	171	175	11.9999
AGAG	chr16:2579865-2580089(+)$1	224	126	130	11.9999
agag	chr19:45314400-45314631(+)$1	231	12	16	11.9999
agag	chr8:9629522-9629824(+)$1	302	24	28	11.9999
AGAG	chr3:186504450-186504655(+)$1	205	86	90	11.9999
AGAG	chr17:165172-165424(-)$1	252	20	24	11.9999
agag	chr8:77557719-77557950(-)$1	231	72	76	11.9999
AGAG	chr1:173835358-173835577(-)$1	219	111	115	11.9999
AGAG	chr2:20192610-20192904(-)$1	294	241	245	11.9999
AGAG	chr11:66384651-66384890(+)$1	239	26	30	11.9999
AGAG	chr22:35738410-35738662(+)$1	252	149	153	11.9999
AGAG	chr16:74506148-74506403(-)$1	255	24	28	11.9999
AGAG	chr1:2214787-2215053(+)$1	266	84	88	11.9999
AGAG	chr3:186504461-186504670(+)$1	209	75	79	11.9999

#otherMatches

#Struct PSSM
GGGG	chrX:132669812-132670037(-)$1	225	15	19	11.9999
DD{D	chr17:79964220-79964455(+)$1	235	57	61	11.9999
JJJJ	chr3:186504423-186504632(+)$1	209	3	7	11.9999
d:::	chr3:197243781-197244066(-)$1	285	139	143	11.9999
d[dd	chr19:33949945-33950234(-)$1	289	112	116	11.9999
ssss	chr19:15754219-15754484(+)$1	265	81	85	11.9999
ddbb	chr12:123994385-123994676(-)$1	291	23	27	11.9999
dggg	chr16:85838465-85838808(+)$1	343	89	93	11.9999
{BBB	chr7:157568590-157568816(-)$1	226	11	15	11.9999
!fff	chr14:50235029-50235305(+)$1	276	20	24	11.9999
gggg	chr11:68084435-68084715(+)$1	280	233	237	11.9999
^^^^	chr1:8651552-8651798(-)$1	246	53	57	11.9999
hhhh	chr11:76594356-76594564(+)$1	208	151	155	11.9999
JJ:D	chr17:94349-94627(-)$1	278	33	37	11.9999
{A{F	chrM:1441-1652(+)$1	211	4	8	11.9999
:A{I	chr4:39299116-39299359(-)$1	243	70	74	11.9999
:CCC	chr16:81490343-81490564(+)$1	221	0	4	11.9999
e]cc	chr3:186504455-186504661(+)$1	206	81	85	11.9999
EE}E	chr11:125472097-125472411(+)$1	314	279	283	11.9999
c:::	chr16:81499130-81499397(+)$1	267	99	103	11.9999
mbb2	chr17:165420-165698(-)$1	278	122	126	11.9999
"""d	chr17:164477-164717(-)$1	240	37	41	11.9999
333d	chr9:137228725-137228976(+)$1	251	176	180	11.9999
33cc	chr17:4849841-4850089(-)$1	248	113	117	11.9999
ddoo	chr3:52722819-52723070(+)$1	251	47	51	11.9999
ddd2	chr3:65880829-65881090(-)$1	261	86	90	11.9999
::::	chr7:157568555-157568790(-)$1	235	3	7	11.9999
e]cc	chr3:186504432-186504636(+)$1	204	104	108	11.9999
]fff	chrM:1454-1664(+)$1	210	95	99	11.9999
nndd	chr3:186504485-186504698(+)$1	213	51	55	11.9999
FFFF	chr10:102122548-102122784(+)$1	236	77	81	11.9999
JJJJ	chrX:68892277-68892482(+)$1	205	42	46	11.9999
MMMM	chr3:197243866-197244164(-)$1	298	20	24	11.9999
::::	chr19:23505240-23505525(-)$1	285	1	5	11.9999
fccc	chr11:62300156-62300416(-)$1	260	145	149	11.9999
]fff	chrM:1452-1654(+)$1	202	97	101	11.9999
#fff	chrX:132669918-132670156(-)$1	238	134	138	11.9999
IIII	chr22:35740147-35740478(+)$1	331	218	222	11.9999
b!!d	chr17:164426-164677(-)$1	251	57	61	11.9999
||||	chrX:153063683-153063964(+)$1	281	185	189	11.9999
JJJJ	chr3:186504419-186504623(+)$1	204	7	11	11.9999
::cc	chr3:160232595-160232807(-)$1	212	114	118	11.9999
bb[a	chr1:173835915-173836165(-)$1	250	77	81	11.9999
BNNN	chr3:53870328-53870585(-)$1	257	7	11	11.9999
::::	chr16:50630572-50630823(+)$1	251	79	83	11.9999
JJJJ	chr3:186504408-186504612(+)$1	204	18	22	11.9999
{EEE	chr17:18965284-18965549(+)$1	265	2	6	11.9999
::::	chr17:75212402-75212697(+)$1	295	287	291	11.9999
!a[a	chr14:94908788-94909044(-)$1	256	55	59	11.9999
[bb$	chr17:165316-165585(-)$1	269	9	13	11.9999
d[cc	chr16:50583734-50583987(+)$1	253	84	88	11.9999
dddd	chr19:23507649-23507906(-)$1	257	162	166	11.9999
::::	chr19:23507344-23507627(-)$1	283	11	15	11.9999
:eee	chr4:83816906-83817165(-)$1	259	34	38	11.9999
C}A}	chr19:23507461-23507708(-)$1	247	92	96	11.9999
:DDD	chrM:1425-1641(+)$1	216	15	19	11.9999
dddb	chr9:33112319-33112585(-)$1	266	118	122	11.9999
d:::	chr16:81547155-81547394(+)$1	239	143	147	11.9999
e]cc	chr3:186504436-186504642(+)$1	206	100	104	11.9999
cccB	chr3:41274968-41275211(+)$1	243	197	201	11.9999
::::	chr3:186794103-186794344(+)$1	241	137	141	11.9999
JJJJ	chrX:68892267-68892477(+)$1	210	52	56	11.9999
NNNN	chr3:197245910-197246193(-)$1	283	26	30	11.9999
FF}C	chr22:35738301-35738595(+)$1	294	258	262	11.9999
#fff	chrX:132669837-132670063(-)$1	226	41	45	11.9999
:ggg	chr14:21731679-21731902(-)$1	223	171	175	11.9999
ssss	chr16:2579865-2580089(+)$1	224	126	130	11.9999
c]aC	chr19:45314400-45314631(+)$1	231	12	16	11.9999
DHHH	chr8:9629522-9629824(+)$1	302	24	28	11.9999
e]cc	chr3:186504450-186504655(+)$1	205	86	90	11.9999
!!ee	chr17:165172-165424(-)$1	252	20	24	11.9999
ee]b	chr8:77557719-77557950(-)$1	231	72	76	11.9999
oooo	chr1:173835358-173835577(-)$1	219	111	115	11.9999
2eee	chr2:20192610-20192904(-)$1	294	241	245	11.9999
qa]c	chr11:66384651-66384890(+)$1	239	26	30	11.9999
c:hh	chr22:35738410-35738662(+)$1	252	149	153	11.9999
DDDD	chr16:74506148-74506403(-)$1	255	24	28	11.9999
llle	chr1:2214787-2215053(+)$1	266	84	88	11.9999
e]cc	chr3:186504461-186504670(+)$1	209	75	79	11.9999

#DB
((((	chrX:132669812-132670037(-)$1	1	15	19	11.9999
((.(	chr17:79964220-79964455(+)$1	1	57	61	11.9999
((((	chr3:186504423-186504632(+)$1	1	3	7	11.9999
)...	chr3:197243781-197244066(-)$1	1	139	143	11.9999
(.((	chr19:33949945-33950234(-)$1	1	112	116	11.9999
....	chr19:15754219-15754484(+)$1	1	81	85	11.9999
((((	chr12:123994385-123994676(-)$1	1	23	27	11.9999
)(((	chr16:85838465-85838808(+)$1	1	89	93	11.9999
.(((	chr7:157568590-157568816(-)$1	1	11	15	11.9999
.(((	chr14:50235029-50235305(+)$1	1	20	24	11.9999
))))	chr11:68084435-68084715(+)$1	1	233	237	11.9999
....	chr1:8651552-8651798(-)$1	1	53	57	11.9999
((((	chr11:76594356-76594564(+)$1	1	151	155	11.9999
((.(	chr17:94349-94627(-)$1	1	33	37	11.9999
.(.(	chrM:1441-1652(+)$1	1	4	8	11.9999
.(.(	chr4:39299116-39299359(-)$1	1	70	74	11.9999
.(((	chr16:81490343-81490564(+)$1	1	0	4	11.9999
).))	chr3:186504455-186504661(+)$1	1	81	85	11.9999
)).)	chr11:125472097-125472411(+)$1	1	279	283	11.9999
)...	chr16:81499130-81499397(+)$1	1	99	103	11.9999
.)).	chr17:165420-165698(-)$1	1	122	126	11.9999
...(	chr17:164477-164717(-)$1	1	37	41	11.9999
...)	chr9:137228725-137228976(+)$1	1	176	180	11.9999
..))	chr17:4849841-4850089(-)$1	1	113	117	11.9999
((..	chr3:52722819-52723070(+)$1	1	47	51	11.9999
))).	chr3:65880829-65881090(-)$1	1	86	90	11.9999
....	chr7:157568555-157568790(-)$1	1	3	7	11.9999
).))	chr3:186504432-186504636(+)$1	1	104	108	11.9999
.)))	chrM:1454-1664(+)$1	1	95	99	11.9999
..))	chr3:186504485-186504698(+)$1	1	51	55	11.9999
((((	chr10:102122548-102122784(+)$1	1	77	81	11.9999
((((	chrX:68892277-68892482(+)$1	1	42	46	11.9999
....	chr3:197243866-197244164(-)$1	1	20	24	11.9999
....	chr19:23505240-23505525(-)$1	1	1	5	11.9999
))))	chr11:62300156-62300416(-)$1	1	145	149	11.9999
.)))	chrM:1452-1654(+)$1	1	97	101	11.9999
.(((	chrX:132669918-132670156(-)$1	1	134	138	11.9999
((((	chr22:35740147-35740478(+)$1	1	218	222	11.9999
(..(	chr17:164426-164677(-)$1	1	57	61	11.9999
....	chrX:153063683-153063964(+)$1	1	185	189	11.9999
((((	chr3:186504419-186504623(+)$1	1	7	11	11.9999
..((	chr3:160232595-160232807(-)$1	1	114	118	11.9999
((.(	chr1:173835915-173836165(-)$1	1	77	81	11.9999
(...	chr3:53870328-53870585(-)$1	1	7	11	11.9999
....	chr16:50630572-50630823(+)$1	1	79	83	11.9999
((((	chr3:186504408-186504612(+)$1	1	18	22	11.9999
.(((	chr17:18965284-18965549(+)$1	1	2	6	11.9999
....	chr17:75212402-75212697(+)$1	1	287	291	11.9999
.(.(	chr14:94908788-94909044(-)$1	1	55	59	11.9999
.((.	chr17:165316-165585(-)$1	1	9	13	11.9999
(.((	chr16:50583734-50583987(+)$1	1	84	88	11.9999
))))	chr19:23507649-23507906(-)$1	1	162	166	11.9999
....	chr19:23507344-23507627(-)$1	1	11	15	11.9999
.(((	chr4:83816906-83817165(-)$1	1	34	38	11.9999
).).	chr19:23507461-23507708(-)$1	1	92	96	11.9999
.(((	chrM:1425-1641(+)$1	1	15	19	11.9999
))))	chr9:33112319-33112585(-)$1	1	118	122	11.9999
)...	chr16:81547155-81547394(+)$1	1	143	147	11.9999
).))	chr3:186504436-186504642(+)$1	1	100	104	11.9999
))))	chr3:41274968-41275211(+)$1	1	197	201	11.9999
....	chr3:186794103-186794344(+)$1	1	137	141	11.9999
((((	chrX:68892267-68892477(+)$1	1	52	56	11.9999
....	chr3:197245910-197246193(-)$1	1	26	30	11.9999
)).)	chr22:35738301-35738595(+)$1	1	258	262	11.9999
.(((	chrX:132669837-132670063(-)$1	1	41	45	11.9999
.(((	chr14:21731679-21731902(-)$1	1	171	175	11.9999
....	chr16:2579865-2580089(+)$1	1	126	130	11.9999
).)(	chr19:45314400-45314631(+)$1	1	12	16	11.9999
((((	chr8:9629522-9629824(+)$1	1	24	28	11.9999
).))	chr3:186504450-186504655(+)$1	1	86	90	11.9999
..((	chr17:165172-165424(-)$1	1	20	24	11.9999
)).)	chr8:77557719-77557950(-)$1	1	72	76	11.9999
....	chr1:173835358-173835577(-)$1	1	111	115	11.9999
.)))	chr2:20192610-20192904(-)$1	1	241	245	11.9999
.).)	chr11:66384651-66384890(+)$1	1	26	30	11.9999
).((	chr22:35738410-35738662(+)$1	1	149	153	11.9999
((((	chr16:74506148-74506403(-)$1	1	24	28	11.9999
...)	chr1:2214787-2215053(+)$1	1	84	88	11.9999
).))	chr3:186504461-186504670(+)$1	1	75	79	11.9999

#PSSM
A : 0.78	a : 0.21	
G : 0.81	g : 0.18	
A : 0.81	a : 0.18	
G : 0.81	g : 0.18	

#score	947.9999999999999
#seq	79
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_CDS_m1_run1.nuc.txt

#NT
GCUGGC	chr2:97533379-97533616(-)$1	237	19	25	17.9999
GCUGGC	chr2:21266704-21267036(-)$1	332	212	218	17.9999
GCUGGC	chr14:23770956-23771176(+)$1	220	81	87	17.9999
GCUGGC	chr16:1419954-1420253(-)$1	299	144	150	17.9999
GCUGGC	chr2:97482284-97482545(+)$1	261	77	83	17.9999
GCUGGC	chr3:13461567-13461855(-)$1	288	37	43	17.9999
gcuggc	chr21:38119979-38120204(+)$1	225	119	125	17.9999
GCUGGC	chr11:116707700-116707974(-)$1	274	66	72	17.9999
GCUGGC	chr14:94849370-94849659(-)$1	289	117	123	17.9999
GCUGGC	chr2:216300345-216300618(-)$1	273	125	131	17.9999
GCUGGC	chr14:23770951-23771156(+)$1	205	86	92	17.9999
GCUGGC	chr19:2270511-2270780(+)$1	269	206	212	17.9999
GCUGGC	chr2:21266636-21266901(-)$1	265	77	83	17.9999
GCUGGC	chr1:228327931-228328179(+)$1	248	86	92	17.9999
GCUGGC	chr6:31937067-31937359(+)$1	292	162	168	17.9999
GCUGGC	chr3:133465151-133465428(+)$1	277	209	215	17.9999
GCUGGC	chr8:145693805-145694074(+)$1	269	220	226	17.9999
GCUGGC	chr7:45144099-45144429(-)$1	330	177	183	17.9999

#otherMatches

#Struct PSSM
:BBKKD	chr1:249151853-249152142(-)$1	289	1	7	17.9999
bb[ddd	chr2:97533379-97533616(-)$1	237	19	25	17.9999
nnnncc	chr2:21266704-21267036(-)$1	332	212	218	17.9999
ffff]c	chr14:23770956-23771176(+)$1	220	81	87	17.9999
ffffff	chr16:1419954-1420253(-)$1	299	144	150	17.9999
JJJJJJ	chr2:97482284-97482545(+)$1	261	77	83	17.9999
mmmbb2	chr3:13461567-13461855(-)$1	288	37	43	17.9999
C::ccc	chr21:38119979-38120204(+)$1	225	119	125	17.9999
eeeee3	chr11:116707700-116707974(-)$1	274	66	72	17.9999
ff:eee	chr14:94849370-94849659(-)$1	289	117	123	17.9999
KKDDDD	chr2:216300345-216300618(-)$1	273	125	131	17.9999
ffff]c	chr14:23770951-23771156(+)$1	205	86	92	17.9999
ppppee	chr19:2270511-2270780(+)$1	269	206	212	17.9999
::eeee	chr2:21266636-21266901(-)$1	265	77	83	17.9999
hhhhhh	chr1:228327931-228328179(+)$1	248	86	92	17.9999
dd"""e	chr6:31937067-31937359(+)$1	292	162	168	17.9999
}EEEEE	chr3:133465151-133465428(+)$1	277	209	215	17.9999
dccc44	chr8:145693805-145694074(+)$1	269	220	226	17.9999
dbb[ee	chr7:45144099-45144429(-)$1	330	177	183	17.9999

#DB
.((..(	chr1:249151853-249152142(-)$1	1	1	7	17.9999
((.(((	chr2:97533379-97533616(-)$1	1	19	25	17.9999
....))	chr2:21266704-21267036(-)$1	1	212	218	17.9999
)))).)	chr14:23770956-23771176(+)$1	1	81	87	17.9999
))))))	chr16:1419954-1420253(-)$1	1	144	150	17.9999
((((((	chr2:97482284-97482545(+)$1	1	77	83	17.9999
...)).	chr3:13461567-13461855(-)$1	1	37	43	17.9999
(..(((	chr21:38119979-38120204(+)$1	1	119	125	17.9999
))))).	chr11:116707700-116707974(-)$1	1	66	72	17.9999
)).(((	chr14:94849370-94849659(-)$1	1	117	123	17.9999
..((((	chr2:216300345-216300618(-)$1	1	125	131	17.9999
)))).)	chr14:23770951-23771156(+)$1	1	86	92	17.9999
....))	chr19:2270511-2270780(+)$1	1	206	212	17.9999
..((((	chr2:21266636-21266901(-)$1	1	77	83	17.9999
))))))	chr1:228327931-228328179(+)$1	1	86	92	17.9999
((...(	chr6:31937067-31937359(+)$1	1	162	168	17.9999
.)))))	chr3:133465151-133465428(+)$1	1	209	215	17.9999
))))..	chr8:145693805-145694074(+)$1	1	220	226	17.9999
(((.((	chr7:45144099-45144429(-)$1	1	177	183	17.9999

#PSSM
G : 0.94	g : 0.05	
C : 0.94	c : 0.05	
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	
C : 0.94	c : 0.05	

#score	341.99999999999994
#seq	19
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_transcript_m3_run2.nuc.txt

#NT
UUUCUCA	chr12:123246619-123246868(+)$1	249	24	31	16.3125
UUUCGCA	chr11:129746659-129746904(-)$1	245	153	160	11.8593
UUUCUUA	chr7:17362205-17362471(+)$1	266	46	53	12.9531
UUUCUUA	chr10:69810438-69810697(-)$1	259	15	22	12.9531
UUCCUCA	chr7:138209831-138210063(+)$1	232	107	114	12.5625
UUUCUGA	chr7:5239093-5239342(+)$1	249	89	96	12.8750
UUUCUCU	chr19:5656015-5656326(+)$1	311	12	19	13.5781
UUCCUCA	chr20:10579210-10579507(+)$1	297	138	145	12.5625
UUUCUCU	chr3:30691613-30691846(+)$1	233	99	106	13.5781
CUUCUCA	chr2:223798108-223798341(+)$1	233	21	28	12.0937
UUUGUCA	chr2:216209613-216209860(+)$1	247	105	112	11.8593
UUUCUCA	chr6:168313935-168314180(+)$1	245	215	222	16.3125
UUUCUCU	chr11:118888175-118888459(-)$1	284	121	128	13.5781
UUUCUUA	chr2:84677049-84677303(-)$1	254	246	253	12.9531
UUUCUCU	chr1:109909945-109910215(-)$1	270	99	106	13.5781
UUUCCCA	chr16:2807670-2807910(+)$1	240	15	22	11.8593
UUUCACA	chr2:27587573-27587886(-)$1	313	4	11	12.0937
UUACUCA	chr9:33338390-33338639(+)$1	249	42	49	12.2500
UUUAUCA	chr5:94848369-94848649(-)$1	280	165	172	12.0937
UUACUCA	chr9:123788131-123788380(-)$1	249	112	119	12.2500
UUGCUCA	chr13:34406948-34407255(+)$1	307	275	282	12.2500
UUUCUGA	chr2:135891567-135891821(+)$1	254	22	29	12.8750
UUUCUCA	chr1:100756719-100756991(+)$1	272	91	98	16.3125
uuucucu	chr2:73245234-73245499(-)$1	265	72	79	13.5781
UUUCUCC	chr9:14845935-14846204(-)$1	269	96	103	13.0312
UUUCUCU	chr16:72107678-72107946(+)$1	268	99	106	13.5781
uuucucc	chrX:27409041-27409319(-)$1	278	132	139	13.0312
UUUCUCC	chr3:33644123-33644414(-)$1	291	141	148	13.0312
UUUCUCA	chr7:104706625-104706869(+)$1	244	77	84	16.3125
CUUCUCA	chr6:170051962-170052225(-)$1	263	53	60	12.0937
UUUCUCC	chr2:54140935-54141167(-)$1	232	174	181	13.0312
uuucaca	chr2:63003402-63003647(+)$1	245	64	71	12.0937
uuucuua	chr2:138724198-138724433(+)$1	235	5	12	12.9531
UUUAUCA	chr3:100023376-100023634(+)$1	258	233	240	12.0937
UUUCUCU	chr8:121554091-121554357(-)$1	266	95	102	13.5781
UUUCUAA	chr9:140470199-140470473(-)$1	274	25	32	12.7968
UUCCUCA	chr7:91672428-91672721(+)$1	293	159	166	12.5625
UUCCUCA	chr14:75303630-75303902(+)$1	272	24	31	12.5625
UUUUUCA	chr2:42489495-42489710(+)$1	215	120	127	11.8593
UUUCUCU	chr2:128913837-128914095(+)$1	258	107	114	13.5781
UUUAUCA	chr14:73569090-73569329(+)$1	239	76	83	12.0937
UUUCUAA	chr13:37584649-37584942(-)$1	293	87	94	12.7968
uuucucu	chr22:30398703-30399013(+)$1	310	109	116	13.5781
uuucucu	chr2:112000901-112001215(-)$1	314	11	18	13.5781
UUUCUGA	chr6:34741101-34741363(+)$1	262	77	84	12.8750
UUCCUCA	chr5:96063070-96063334(+)$1	264	27	34	12.5625
UUUCUAA	chr17:40738942-40739198(-)$1	256	7	14	12.7968
guucuca	chr2:152279617-152279883(+)$1	266	217	224	11.9375
UUUCUUA	chr10:101559145-101559407(+)$1	262	64	71	12.9531
UUUCUAA	chr1:75186142-75186438(-)$1	296	227	234	12.7968
UUUCACA	chr8:17513440-17513695(-)$1	255	72	79	12.0937
GUUCUCA	chr5:52977394-52977700(+)$1	306	39	46	11.9375
CUUCUCA	chr17:18244346-18244644(-)$1	298	267	274	12.0937
UUCCUCA	chr20:31017160-31017410(+)$1	250	104	111	12.5625
UUUAUCA	chr1:92158279-92158540(-)$1	261	217	224	12.0937
cuucuca	chr12:108938093-108938418(-)$1	325	50	57	12.0937
UUUCUCC	chr6:64404090-64404343(+)$1	253	210	217	13.0312
UUGCUCA	chr16:66766321-66766526(-)$1	205	35	42	12.2500
UUUCUCU	chr1:146672957-146673220(-)$1	263	87	94	13.5781
UUUCUGA	chr5:132335190-132335444(-)$1	254	57	64	12.8750
UUUCUCU	chr3:30711476-30711743(+)$1	267	1	8	13.5781
UUUCUGA	chr7:103628703-103628976(-)$1	273	27	34	12.8750
UUUCACA	chr1:207269336-207269576(+)$1	240	91	98	12.0937

#otherMatches

#Struct PSSM
bb!!eee	chr14:61228385-61228680(+)$1	295	171	178	12.9531
======F	chr12:123246619-123246868(+)$1	249	24	31	16.3125
rrrccc:	chr11:129746659-129746904(-)$1	245	153	160	11.8593
c[bb"""	chr7:17362205-17362471(+)$1	266	46	53	12.9531
:::::::	chr10:69810438-69810697(-)$1	259	15	22	12.9531
eeeee::	chr7:138209831-138210063(+)$1	232	107	114	12.5625
=dddd]a	chr7:5239093-5239342(+)$1	249	89	96	12.8750
:::::CC	chr19:5656015-5656326(+)$1	311	12	19	13.5781
22ccc33	chr20:10579210-10579507(+)$1	297	138	145	12.5625
eeeeeeb	chr3:30691613-30691846(+)$1	233	99	106	13.5781
bgggggg	chr2:223798108-223798341(+)$1	233	21	28	12.0937
]ddddhh	chr2:216209613-216209860(+)$1	247	105	112	11.8593
d22a]bb	chr6:168313935-168314180(+)$1	245	215	222	16.3125
mmmmddd	chr11:118888175-118888459(-)$1	284	121	128	13.5781
IIIII::	chr2:84677049-84677303(-)$1	254	246	253	12.9531
:::::::	chr1:109909945-109910215(-)$1	270	99	106	13.5781
:::::::	chr16:2807670-2807910(+)$1	240	15	22	11.8593
iiiiiii	chr2:27587573-27587886(-)$1	313	4	11	12.0937
c[ccc++	chr9:33338390-33338639(+)$1	249	42	49	12.2500
ooooohh	chr5:94848369-94848649(-)$1	280	165	172	12.0937
:::::::	chr9:123788131-123788380(-)$1	249	112	119	12.2500
7777hhh	chr13:34406948-34407255(+)$1	307	275	282	12.2500
DDDDD::	chr2:135891567-135891821(+)$1	254	22	29	12.8750
8888888	chr1:100756719-100756991(+)$1	272	91	98	16.3125
^^^^^^^	chr2:73245234-73245499(-)$1	265	72	79	13.5781
^^^^^^^	chr9:14845935-14846204(-)$1	269	96	103	13.0312
===CCCL	chr16:72107678-72107946(+)$1	268	99	106	13.5781
::::ddd	chrX:27409041-27409319(-)$1	278	132	139	13.0312
gggggg:	chr3:33644123-33644414(-)$1	291	141	148	13.0312
:::::::	chr7:104706625-104706869(+)$1	244	77	84	16.3125
c:ggggg	chr6:170051962-170052225(-)$1	263	53	60	12.0937
gggCCC}	chr2:54140935-54141167(-)$1	232	174	181	13.0312
d"""bb[	chr2:63003402-63003647(+)$1	245	64	71	12.0937
JJJJJJJ	chr2:138724198-138724433(+)$1	235	5	12	12.9531
GGGGGJJ	chr3:100023376-100023634(+)$1	258	233	240	12.0937
bb]ccc]	chr8:121554091-121554357(-)$1	266	95	102	13.5781
fffff::	chr9:140470199-140470473(-)$1	274	25	32	12.7968
ffffffs	chr7:91672428-91672721(+)$1	293	159	166	12.5625
eee####	chr14:75303630-75303902(+)$1	272	24	31	12.5625
!ffffff	chr2:42489495-42489710(+)$1	215	120	127	11.8593
:::::::	chr2:128913837-128914095(+)$1	258	107	114	13.5781
i"""ddd	chr14:73569090-73569329(+)$1	239	76	83	12.0937
qqqqddd	chr13:37584649-37584942(-)$1	293	87	94	12.7968
:::::::	chr22:30398703-30399013(+)$1	310	109	116	13.5781
:::::::	chr2:112000901-112001215(-)$1	314	11	18	13.5781
:::::::	chr6:34741101-34741363(+)$1	262	77	84	12.8750
mmmeeee	chr5:96063070-96063334(+)$1	264	27	34	12.5625
:::::::	chr17:40738942-40739198(-)$1	256	7	14	12.7968
gg::::f	chr2:152279617-152279883(+)$1	266	217	224	11.9375
::::eee	chr10:101559145-101559407(+)$1	262	64	71	12.9531
fflllff	chr1:75186142-75186438(-)$1	296	227	234	12.7968
eeeqqqq	chr8:17513440-17513695(-)$1	255	72	79	12.0937
dddd[bb	chr5:52977394-52977700(+)$1	306	39	46	11.9375
EEEEYYF	chr17:18244346-18244644(-)$1	298	267	274	12.0937
dddd]a]	chr20:31017160-31017410(+)$1	250	104	111	12.5625
ddd6666	chr1:92158279-92158540(-)$1	261	217	224	12.0937
:ddddmm	chr12:108938093-108938418(-)$1	325	50	57	12.0937
~EEEEE:	chr6:64404090-64404343(+)$1	253	210	217	13.0312
iiiiiii	chr16:66766321-66766526(-)$1	205	35	42	12.2500
DDDDFFF	chr1:146672957-146673220(-)$1	263	87	94	13.5781
ee4444g	chr5:132335190-132335444(-)$1	254	57	64	12.8750
::EEEEE	chr3:30711476-30711743(+)$1	267	1	8	13.5781
!gggggg	chr7:103628703-103628976(-)$1	273	27	34	12.8750
hh:::::	chr1:207269336-207269576(+)$1	240	91	98	12.0937

#DB
((..(((	chr14:61228385-61228680(+)$1	1	171	178	12.9531
))))))(	chr12:123246619-123246868(+)$1	1	24	31	16.3125
...))).	chr11:129746659-129746904(-)$1	1	153	160	11.8593
(.((...	chr7:17362205-17362471(+)$1	1	46	53	12.9531
.......	chr10:69810438-69810697(-)$1	1	15	22	12.9531
)))))..	chr7:138209831-138210063(+)$1	1	107	114	12.5625
))))).)	chr7:5239093-5239342(+)$1	1	89	96	12.8750
.....((	chr19:5656015-5656326(+)$1	1	12	19	13.5781
..)))..	chr20:10579210-10579507(+)$1	1	138	145	12.5625
(((((((	chr3:30691613-30691846(+)$1	1	99	106	13.5781
)))))))	chr2:223798108-223798341(+)$1	1	21	28	12.0937
.))))))	chr2:216209613-216209860(+)$1	1	105	112	11.8593
)..).))	chr6:168313935-168314180(+)$1	1	215	222	16.3125
....)))	chr11:118888175-118888459(-)$1	1	121	128	13.5781
)))))..	chr2:84677049-84677303(-)$1	1	246	253	12.9531
.......	chr1:109909945-109910215(-)$1	1	99	106	13.5781
.......	chr16:2807670-2807910(+)$1	1	15	22	11.8593
(((((((	chr2:27587573-27587886(-)$1	1	4	11	12.0937
(.(((..	chr9:33338390-33338639(+)$1	1	42	49	12.2500
.....))	chr5:94848369-94848649(-)$1	1	165	172	12.0937
.......	chr9:123788131-123788380(-)$1	1	112	119	12.2500
....)))	chr13:34406948-34407255(+)$1	1	275	282	12.2500
(((((..	chr2:135891567-135891821(+)$1	1	22	29	12.8750
.......	chr1:100756719-100756991(+)$1	1	91	98	16.3125
.......	chr2:73245234-73245499(-)$1	1	72	79	13.5781
.......	chr9:14845935-14846204(-)$1	1	96	103	13.0312
)))(((.	chr16:72107678-72107946(+)$1	1	99	106	13.5781
....(((	chrX:27409041-27409319(-)$1	1	132	139	13.0312
)))))).	chr3:33644123-33644414(-)$1	1	141	148	13.0312
.......	chr7:104706625-104706869(+)$1	1	77	84	16.3125
).(((((	chr6:170051962-170052225(-)$1	1	53	60	12.0937
)))))).	chr2:54140935-54141167(-)$1	1	174	181	13.0312
(...((.	chr2:63003402-63003647(+)$1	1	64	71	12.0937
(((((((	chr2:138724198-138724433(+)$1	1	5	12	12.9531
)))))))	chr3:100023376-100023634(+)$1	1	233	240	12.0937
)).))).	chr8:121554091-121554357(-)$1	1	95	102	13.5781
)))))..	chr9:140470199-140470473(-)$1	1	25	32	12.7968
((((((.	chr7:91672428-91672721(+)$1	1	159	166	12.5625
(((....	chr14:75303630-75303902(+)$1	1	24	31	12.5625
.((((((	chr2:42489495-42489710(+)$1	1	120	127	11.8593
.......	chr2:128913837-128914095(+)$1	1	107	114	13.5781
(...(((	chr14:73569090-73569329(+)$1	1	76	83	12.0937
....)))	chr13:37584649-37584942(-)$1	1	87	94	12.7968
.......	chr22:30398703-30399013(+)$1	1	109	116	13.5781
.......	chr2:112000901-112001215(-)$1	1	11	18	13.5781
.......	chr6:34741101-34741363(+)$1	1	77	84	12.8750
...))))	chr5:96063070-96063334(+)$1	1	27	34	12.5625
.......	chr17:40738942-40739198(-)$1	1	7	14	12.7968
))....(	chr2:152279617-152279883(+)$1	1	217	224	11.9375
....(((	chr10:101559145-101559407(+)$1	1	64	71	12.9531
((...))	chr1:75186142-75186438(-)$1	1	227	234	12.7968
(((....	chr8:17513440-17513695(-)$1	1	72	79	12.0937
((((.((	chr5:52977394-52977700(+)$1	1	39	46	11.9375
))))..)	chr17:18244346-18244644(-)$1	1	267	274	12.0937
)))).).	chr20:31017160-31017410(+)$1	1	104	111	12.5625
)))....	chr1:92158279-92158540(-)$1	1	217	224	12.0937
.((((..	chr12:108938093-108938418(-)$1	1	50	57	12.0937
.))))).	chr6:64404090-64404343(+)$1	1	210	217	13.0312
(((((((	chr16:66766321-66766526(-)$1	1	35	42	12.2500
(((((((	chr1:146672957-146673220(-)$1	1	87	94	13.5781
))....)	chr5:132335190-132335444(-)$1	1	57	64	12.8750
..(((((	chr3:30711476-30711743(+)$1	1	1	8	13.5781
.((((((	chr7:103628703-103628976(-)$1	1	27	34	12.8750
)).....	chr1:207269336-207269576(+)$1	1	91	98	12.0937

#PSSM
U : 0.81	u : 0.09	C : 0.04	g : 0.01	G : 0.01	c : 0.01	
U : 0.87	u : 0.12	
U : 0.71	u : 0.12	C : 0.09	A : 0.03	G : 0.03	
C : 0.78	c : 0.12	A : 0.06	G : 0.01	U : 0.01	
U : 0.79	u : 0.10	A : 0.04	G : 0.01	C : 0.01	a : 0.01	
C : 0.65	c : 0.10	U : 0.07	G : 0.07	A : 0.06	u : 0.01	
A : 0.67	U : 0.14	C : 0.06	a : 0.06	u : 0.04	c : 0.01	

#score	827.4375
#seq	64
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_transcript_m3_run1.nuc.txt

#NT
UUUUUCU	chr16:2808937-2809148(+)$1	211	179	186	16.9322
AUUUUCU	chr14:102452236-102452473(+)$1	237	75	82	13.5423
UUAUUCU	chr17:62270823-62271119(-)$1	296	135	142	12.4406
uuuuucu	chr11:120318503-120318715(+)$1	212	62	69	16.9322
UUAUUCU	chr17:15964882-15965130(-)$1	248	231	238	12.4406
UUUUUCC	chrX:41043616-41043858(+)$1	242	24	31	12.8644
UAUUUCU	chr7:151860656-151860916(-)$1	260	211	218	13.1186
UAUUUCU	chr17:57742063-57742333(+)$1	270	106	113	13.1186
UCUUUCU	chr3:121414090-121414325(-)$1	235	121	128	12.8644
UUUUUCU	chr14:56137346-56137613(+)$1	267	57	64	16.9322
UUUUUAU	chr15:41756868-41757151(+)$1	283	50	57	13.5423
uuuuucu	chr1:202731737-202731991(-)$1	254	188	195	16.9322
UUUUUGU	chr14:95571952-95572206(-)$1	254	46	53	13.4576
UUUUUAU	chr6:56418322-56418554(-)$1	232	26	33	13.5423
CUUUUCU	chr6:7577911-7578113(+)$1	202	73	80	13.4576
UUUUUUU	chr17:57759962-57760253(+)$1	291	14	21	13.5423
UUUUUGU	chr6:7576574-7576785(+)$1	211	127	134	13.4576
UAUUUCU	chr8:144940174-144940422(-)$1	248	238	245	13.1186
UUUUACU	chr17:57758936-57759218(+)$1	282	34	41	12.1016
UUUUUCC	chr2:15519777-15520006(-)$1	229	42	49	12.8644
UGUUUCU	chr8:28999574-28999862(-)$1	288	9	16	13.2033
UUUUUCU	chr1:62941459-62941709(-)$1	250	81	88	16.9322
AUUUUCU	chr9:131370157-131370388(+)$1	231	221	228	13.5423
UUUUUCU	chr3:37381522-37381788(+)$1	266	32	39	16.9322
UUUUUCU	chr6:144837847-144838090(+)$1	243	57	64	16.9322
UUUUUGU	chr2:54864749-54864952(+)$1	203	79	86	13.4576
UUUUUCC	chr22:41572731-41572971(+)$1	240	34	41	12.8644
UGUUUCU	chr10:124001371-124001619(+)$1	248	184	191	13.2033
CUUUUCU	chr17:27010185-27010422(+)$1	237	37	44	13.4576
UUUUUCC	chr7:91728922-91729203(+)$1	281	69	76	12.8644
UUUUUCC	chr20:40161755-40162050(-)$1	295	19	26	12.8644
GUUUUCU	chr6:56338674-56338898(-)$1	224	49	56	13.5423
AUUUUCU	chr15:90992689-90992957(+)$1	268	81	88	13.5423
AUUUUCU	chr2:54886274-54886497(+)$1	223	4	11	13.5423
GUUUUCU	chr14:31588918-31589163(-)$1	245	162	169	13.5423
UUUUUCU	chr16:3817634-3818002(-)$1	368	81	88	16.9322
AUUUUCU	chr6:64412302-64412554(+)$1	252	83	90	13.5423
UGUUUCU	chr1:55560879-55561141(-)$1	262	47	54	13.2033
uuuuuuu	chr10:120809231-120809500(-)$1	269	230	237	13.5423
UUAUUCU	chr1:39951296-39951605(+)$1	309	234	241	12.4406
UUUUUCU	chr11:120348764-120349060(+)$1	296	14	21	16.9322
UUUUUUU	chr17:48827759-48828120(+)$1	361	32	39	13.5423
GUUUUCU	chr4:40154300-40154599(+)$1	299	39	46	13.5423
UUUUUUU	chr4:151752934-151753229(-)$1	295	88	95	13.5423
GUUUUCU	chr6:144835750-144835961(+)$1	211	19	26	13.5423
CUUUUCU	chr12:104335134-104335349(+)$1	215	6	13	13.4576
UUUUUCU	chr1:39905054-39905271(+)$1	217	138	145	16.9322
UAUUUCU	chr2:11347853-11348134(-)$1	281	88	95	13.1186
UGUUUCU	chr1:21226191-21226484(-)$1	293	212	219	13.2033
UUUUUCG	chr11:62291597-62291828(-)$1	231	13	20	12.5254
UUUUUAU	chr2:198263128-198263392(-)$1	264	228	235	13.5423
UUUUUAU	chr6:56433179-56433487(-)$1	308	79	86	13.5423
UUUUUAU	chr14:31569421-31569636(-)$1	215	47	54	13.5423
UUUUUGU	chr6:7577153-7577375(+)$1	222	27	34	13.4576
UUUUUCU	chr6:7303682-7303914(-)$1	232	0	7	16.9322
UGUUUCU	chr18:19426875-19427172(+)$1	297	86	93	13.2033
CUUUUCU	chr14:39648238-39648528(+)$1	290	278	285	13.4576
GUUUUCU	chr8:103282246-103282511(-)$1	265	13	20	13.5423

#otherMatches

#Struct PSSM
C:::GGG	chr15:62228748-62229003(-)$1	255	10	17	13.5423
=======	chr16:2808937-2809148(+)$1	211	179	186	16.9322
uuuuddd	chr14:102452236-102452473(+)$1	237	75	82	13.5423
nnnnccc	chr17:62270823-62271119(-)$1	296	135	142	12.4406
xxxxxxx	chr11:120318503-120318715(+)$1	212	62	69	16.9322
^^^^^^=	chr17:15964882-15965130(-)$1	248	231	238	12.4406
:::::CC	chrX:41043616-41043858(+)$1	242	24	31	12.8644
C}EEEEE	chr7:151860656-151860916(-)$1	260	211	218	13.1186
hhhhhhh	chr17:57742063-57742333(+)$1	270	106	113	13.1186
iiiiiii	chr3:121414090-121414325(-)$1	235	121	128	12.8644
JJJJJJJ	chr14:56137346-56137613(+)$1	267	57	64	16.9322
ggggg%%	chr15:41756868-41757151(+)$1	283	50	57	13.5423
2ffffff	chr1:202731737-202731991(-)$1	254	188	195	16.9322
[ffffff	chr14:95571952-95572206(-)$1	254	46	53	13.4576
GGGLLLE	chr6:56418322-56418554(-)$1	232	26	33	13.5423
xxxxxxx	chr6:7577911-7578113(+)$1	202	73	80	13.4576
yyyyyyy	chr17:57759962-57760253(+)$1	291	14	21	13.5423
=======	chr6:7576574-7576785(+)$1	211	127	134	13.4576
IIIIIII	chr8:144940174-144940422(-)$1	248	238	245	13.1186
hhhhhhh	chr17:57758936-57759218(+)$1	282	34	41	12.1016
HHHHHH:	chr2:15519777-15520006(-)$1	229	42	49	12.8644
c[ccc[e	chr8:28999574-28999862(-)$1	288	9	16	13.2033
meeeeef	chr1:62941459-62941709(-)$1	250	81	88	16.9322
:::::::	chr9:131370157-131370388(+)$1	231	221	228	13.5423
::fffff	chr3:37381522-37381788(+)$1	266	32	39	16.9322
ffffff[	chr6:144837847-144838090(+)$1	243	57	64	16.9322
b[ggggg	chr2:54864749-54864952(+)$1	203	79	86	13.4576
hhhhhh#	chr22:41572731-41572971(+)$1	240	34	41	12.8644
mmmmbb:	chr10:124001371-124001619(+)$1	248	184	191	13.2033
EE:::::	chr17:27010185-27010422(+)$1	237	37	44	13.4576
JJJJJJJ	chr7:91728922-91729203(+)$1	281	69	76	12.8644
HHHHddd	chr20:40161755-40162050(-)$1	295	19	26	12.8644
c:::::e	chr6:56338674-56338898(-)$1	224	49	56	13.5423
JJJJJJJ	chr15:90992689-90992957(+)$1	268	81	88	13.5423
[iiiiii	chr2:54886274-54886497(+)$1	223	4	11	13.5423
ggggggg	chr14:31588918-31589163(-)$1	245	162	169	13.5423
eeeeeee	chr16:3817634-3818002(-)$1	368	81	88	16.9322
hhhhhh]	chr6:64412302-64412554(+)$1	252	83	90	13.5423
b]eeeee	chr1:55560879-55561141(-)$1	262	47	54	13.2033
GGGGGG}	chr10:120809231-120809500(-)$1	269	230	237	13.5423
::::EEE	chr1:39951296-39951605(+)$1	309	234	241	12.4406
JJJJJJJ	chr11:120348764-120349060(+)$1	296	14	21	16.9322
JJJJJJJ	chr17:48827759-48828120(+)$1	361	32	39	13.5423
iiiiiim	chr4:40154300-40154599(+)$1	299	39	46	13.5423
:::::::	chr4:151752934-151753229(-)$1	295	88	95	13.5423
NNNGGGG	chr6:144835750-144835961(+)$1	211	19	26	13.5423
GGG:::g	chr12:104335134-104335349(+)$1	215	6	13	13.4576
hhhhhhh	chr1:39905054-39905271(+)$1	217	138	145	16.9322
IIIIIII	chr2:11347853-11348134(-)$1	281	88	95	13.1186
3ffffff	chr1:21226191-21226484(-)$1	293	212	219	13.2033
FFFFF{E	chr11:62291597-62291828(-)$1	231	13	20	12.5254
:::::::	chr2:198263128-198263392(-)$1	264	228	235	13.5423
ggggg]e	chr6:56433179-56433487(-)$1	308	79	86	13.5423
:::::::	chr14:31569421-31569636(-)$1	215	47	54	13.5423
="""ddd	chr6:7577153-7577375(+)$1	222	27	34	13.4576
:HHHHHH	chr6:7303682-7303914(-)$1	232	0	7	16.9322
eeeemmm	chr18:19426875-19427172(+)$1	297	86	93	13.2033
EYYCCC}	chr14:39648238-39648528(+)$1	290	278	285	13.4576
FFF:::e	chr8:103282246-103282511(-)$1	265	13	20	13.5423

#DB
(...(((	chr15:62228748-62229003(-)$1	1	10	17	13.5423
)))))))	chr16:2808937-2809148(+)$1	1	179	186	16.9322
....)))	chr14:102452236-102452473(+)$1	1	75	82	13.5423
....)))	chr17:62270823-62271119(-)$1	1	135	142	12.4406
.......	chr11:120318503-120318715(+)$1	1	62	69	16.9322
......)	chr17:15964882-15965130(-)$1	1	231	238	12.4406
.....((	chrX:41043616-41043858(+)$1	1	24	31	12.8644
).)))))	chr7:151860656-151860916(-)$1	1	211	218	13.1186
(((((((	chr17:57742063-57742333(+)$1	1	106	113	13.1186
(((((((	chr3:121414090-121414325(-)$1	1	121	128	12.8644
(((((((	chr14:56137346-56137613(+)$1	1	57	64	16.9322
(((((..	chr15:41756868-41757151(+)$1	1	50	57	13.5423
.))))))	chr1:202731737-202731991(-)$1	1	188	195	16.9322
.((((((	chr14:95571952-95572206(-)$1	1	46	53	13.4576
(((...(	chr6:56418322-56418554(-)$1	1	26	33	13.5423
.......	chr6:7577911-7578113(+)$1	1	73	80	13.4576
.......	chr17:57759962-57760253(+)$1	1	14	21	13.5423
)))))))	chr6:7576574-7576785(+)$1	1	127	134	13.4576
)))))))	chr8:144940174-144940422(-)$1	1	238	245	13.1186
)))))))	chr17:57758936-57759218(+)$1	1	34	41	12.1016
((((((.	chr2:15519777-15520006(-)$1	1	42	49	12.8644
(.(((.(	chr8:28999574-28999862(-)$1	1	9	16	13.2033
.))))))	chr1:62941459-62941709(-)$1	1	81	88	16.9322
.......	chr9:131370157-131370388(+)$1	1	221	228	13.5423
..(((((	chr3:37381522-37381788(+)$1	1	32	39	16.9322
((((((.	chr6:144837847-144838090(+)$1	1	57	64	16.9322
(.(((((	chr2:54864749-54864952(+)$1	1	79	86	13.4576
((((((.	chr22:41572731-41572971(+)$1	1	34	41	12.8644
....)).	chr10:124001371-124001619(+)$1	1	184	191	13.2033
((.....	chr17:27010185-27010422(+)$1	1	37	44	13.4576
(((((((	chr7:91728922-91729203(+)$1	1	69	76	12.8644
(((((((	chr20:40161755-40162050(-)$1	1	19	26	12.8644
).....(	chr6:56338674-56338898(-)$1	1	49	56	13.5423
(((((((	chr15:90992689-90992957(+)$1	1	81	88	13.5423
.((((((	chr2:54886274-54886497(+)$1	1	4	11	13.5423
)))))))	chr14:31588918-31589163(-)$1	1	162	169	13.5423
(((((((	chr16:3817634-3818002(-)$1	1	81	88	16.9322
)))))).	chr6:64412302-64412554(+)$1	1	83	90	13.5423
).)))))	chr1:55560879-55561141(-)$1	1	47	54	13.2033
)))))).	chr10:120809231-120809500(-)$1	1	230	237	13.5423
....)))	chr1:39951296-39951605(+)$1	1	234	241	12.4406
(((((((	chr11:120348764-120349060(+)$1	1	14	21	16.9322
(((((((	chr17:48827759-48828120(+)$1	1	32	39	13.5423
((((((.	chr4:40154300-40154599(+)$1	1	39	46	13.5423
.......	chr4:151752934-151753229(-)$1	1	88	95	13.5423
...((((	chr6:144835750-144835961(+)$1	1	19	26	13.5423
(((...(	chr12:104335134-104335349(+)$1	1	6	13	13.4576
(((((((	chr1:39905054-39905271(+)$1	1	138	145	16.9322
(((((((	chr2:11347853-11348134(-)$1	1	88	95	13.1186
.))))))	chr1:21226191-21226484(-)$1	1	212	219	13.2033
(((((.(	chr11:62291597-62291828(-)$1	1	13	20	12.5254
.......	chr2:198263128-198263392(-)$1	1	228	235	13.5423
))))).)	chr6:56433179-56433487(-)$1	1	79	86	13.5423
.......	chr14:31569421-31569636(-)$1	1	47	54	13.5423
(...(((	chr6:7577153-7577375(+)$1	1	27	34	13.4576
.((((((	chr6:7303682-7303914(-)$1	1	0	7	16.9322
((((...	chr18:19426875-19427172(+)$1	1	86	93	13.2033
)..))).	chr14:39648238-39648528(+)$1	1	278	285	13.4576
(((...(	chr8:103282246-103282511(-)$1	1	13	20	13.5423

#PSSM
U : 0.71	A : 0.08	G : 0.08	C : 0.06	u : 0.05	
U : 0.77	G : 0.08	A : 0.06	u : 0.05	C : 0.01	
U : 0.89	A : 0.05	u : 0.05	
U : 0.94	u : 0.05	
U : 0.93	u : 0.05	A : 0.01	
C : 0.72	A : 0.08	U : 0.06	G : 0.06	c : 0.03	u : 0.01	
U : 0.84	C : 0.08	u : 0.05	G : 0.01	

#score	822.3898305084743
#seq	59
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_transcript_m3_run2.nuc.txt

#NT
UAUUAAAA	chr7:47598801-47599059(-)$1	258	55	63	13.7321
uuuuaaau	chr11:65195973-65196215(+)$1	242	67	75	18.2857
UUAUAAAU	chr20:22561599-22561925(-)$1	326	32	40	14.0892
AUUUAAAA	chr13:113365292-113365541(+)$1	249	218	226	13.8214
auuuaaag	chr19:40543599-40543880(-)$1	281	34	42	12.3035
uuuugaaa	chr14:35419536-35419842(-)$1	306	68	76	13.7321
UUUUAAAA	chr3:33429873-33430153(-)$1	280	29	37	17.9285
UUUUAAAA	chr1:11085455-11085737(+)$1	282	7	15	17.9285
UUUUAAUU	chr14:24107596-24107879(+)$1	283	222	230	13.6428
UUUUAUAU	chr8:40012233-40012487(+)$1	254	211	219	13.9107
UUUUAAUU	chr6:142659847-142660126(+)$1	279	73	81	13.6428
uuguaaaa	chr18:46912918-46913219(-)$1	301	32	40	13.6428
uucuaaau	chr12:11275919-11276203(-)$1	284	69	77	13.9107
AUUUAAAU	chr10:67442896-67443185(+)$1	289	116	124	14.1785
UUUUCAAA	chr8:97621762-97622015(+)$1	253	53	61	13.8214
UUUUAAAG	chrX:108939451-108939705(-)$1	254	222	230	16.4107
UAUUAAAA	chrX:22012862-22013144(+)$1	282	19	27	13.7321
uuuuaaaa	chr7:7206263-7206559(+)$1	296	92	100	17.9285
UUUUAAAU	chr15:34500544-34500833(-)$1	289	244	252	18.2857
AUUUAAAU	chr4:17487977-17488267(-)$1	290	215	223	14.1785
UUUUACAA	chr19:39669947-39670203(+)$1	256	68	76	13.6428
uuauaaau	chr20:8390651-8390874(+)$1	223	33	41	14.0892
UUUUUAAU	chr13:113496400-113496665(+)$1	265	107	115	14.0892
UUUAAAAU	chr11:85753117-85753415(-)$1	298	46	54	13.8214
UUUUAAAU	chr1:91302544-91302829(-)$1	285	199	207	18.2857
UAUUAAAU	chr14:21161456-21161729(+)$1	273	56	64	14.0892
uuuucaau	chr12:11306893-11307157(-)$1	264	238	246	14.1785
uuuuaaaC	chr2:11455342-11455633(-)$1	291	69	77	16.2321
uuuuaaaa	chr2:73230811-73231119(-)$1	308	242	250	17.9285
UUUUCAAU	chr13:113359783-113360084(+)$1	301	261	269	14.1785
UUUUAAAG	chrX:73458266-73458482(-)$1	216	15	23	16.4107
UAUUAAAA	chr6:1916749-1917037(-)$1	288	65	73	13.7321
AUUUAAAA	chr17:53372766-53372997(+)$1	231	12	20	13.8214
UUUUAAAA	chr3:171904984-171905236(+)$1	252	35	43	17.9285
UUUCAAAU	chr2:201207654-201207895(+)$1	241	37	45	13.7321
UUUUACAU	chr17:35497295-35497578(-)$1	283	49	57	14.0000
UUUUAAAA	chr17:66510874-66511201(+)$1	327	73	81	17.9285
uuuuaaaa	chr7:7206199-7206463(+)$1	264	156	164	17.9285
UUUUAAAC	chr7:138269987-138270268(+)$1	281	9	17	16.2321
UUUUAAAA	chr14:69261268-69261555(-)$1	287	88	96	17.9285
UUUUGAAU	chr1:8071591-8071874(-)$1	283	38	46	14.0892
uuuuaaag	chr13:34411545-34411761(+)$1	216	9	17	16.4107
UUUAAAAU	chr4:83345577-83345884(-)$1	307	149	157	13.8214
UUGUAAAA	chr16:24836696-24836982(+)$1	286	3	11	13.6428
UUUGAAAU	chr10:79800358-79800686(+)$1	328	109	117	13.7321
UUUUAAAA	chr2:169100524-169100815(-)$1	291	113	121	17.9285
uuuuauau	chr3:176868678-176868957(-)$1	279	6	14	13.9107
UUUUAAAA	chr3:171766061-171766298(+)$1	237	6	14	17.9285
UUUUAAAU	chr6:24172436-24172735(-)$1	299	95	103	18.2857
UCUUAAAU	chr17:78767079-78767338(+)$1	259	63	71	13.8214
uuuuaaag	chr1:91419337-91419562(-)$1	225	36	44	16.4107
UUUUAAAC	chr3:171506135-171506457(-)$1	322	43	51	16.2321
UUUUAAAA	chr11:65194254-65194496(+)$1	242	47	55	17.9285
uuauaaau	chr9:72821193-72821509(-)$1	316	259	267	14.0892
UUUUACAA	chr6:1915832-1916083(-)$1	251	36	44	13.6428

#otherMatches

#Struct PSSM
$$$$ffff	chr2:32754494-32754782(+)$1	288	94	102	14.0892
###ddddc	chr7:47598801-47599059(-)$1	258	55	63	13.7321
hhhh"""d	chr11:65195973-65196215(+)$1	242	67	75	18.2857
lggggggg	chr20:22561599-22561925(-)$1	326	32	40	14.0892
ddddoooo	chr13:113365292-113365541(+)$1	249	218	226	13.8214
::::::::	chr19:40543599-40543880(-)$1	281	34	42	12.3035
eeeee333	chr14:35419536-35419842(-)$1	306	68	76	13.7321
dddd::::	chr3:33429873-33430153(-)$1	280	29	37	17.9285
qqqqqqee	chr1:11085455-11085737(+)$1	282	7	15	17.9285
qqqqqqqq	chr14:24107596-24107879(+)$1	283	222	230	13.6428
eee]hhhh	chr8:40012233-40012487(+)$1	254	211	219	13.9107
eeeennnn	chr6:142659847-142660126(+)$1	279	73	81	13.6428
KJJJJJJJ	chr18:46912918-46913219(-)$1	301	32	40	13.6428
::::::::	chr12:11275919-11276203(-)$1	284	69	77	13.9107
fffff555	chr10:67442896-67443185(+)$1	289	116	124	14.1785
:::::iii	chr8:97621762-97622015(+)$1	253	53	61	13.8214
@@@@@HHH	chrX:108939451-108939705(-)$1	254	222	230	16.4107
:::::::I	chrX:22012862-22013144(+)$1	282	19	27	13.7321
KBBQQQQQ	chr7:7206263-7206559(+)$1	296	92	100	17.9285
cFFFFFF}	chr15:34500544-34500833(-)$1	289	244	252	18.2857
ddmmmmdd	chr4:17487977-17488267(-)$1	290	215	223	14.1785
cc[dddd!	chr19:39669947-39670203(+)$1	256	68	76	13.6428
[eeeee!!	chr20:8390651-8390874(+)$1	223	33	41	14.0892
=======[	chr13:113496400-113496665(+)$1	265	107	115	14.0892
yyyyyyyy	chr11:85753117-85753415(-)$1	298	46	54	13.8214
f55555cc	chr1:91302544-91302829(-)$1	285	199	207	18.2857
dddllldd	chr14:21161456-21161729(+)$1	273	56	64	14.0892
555cccdd	chr12:11306893-11307157(-)$1	264	238	246	14.1785
:::hhhhh	chr2:11455342-11455633(-)$1	291	69	77	16.2321
::::::::	chr2:73230811-73231119(-)$1	308	242	250	17.9285
::::::hh	chr13:113359783-113360084(+)$1	301	261	269	14.1785
FFFFFFMM	chrX:73458266-73458482(-)$1	216	15	23	16.4107
^^^^^^^^	chr6:1916749-1917037(-)$1	288	65	73	13.7321
NFFFFFFB	chr17:53372766-53372997(+)$1	231	12	20	13.8214
dddd22ff	chr3:171904984-171905236(+)$1	252	35	43	17.9285
vdddd:::	chr2:201207654-201207895(+)$1	241	37	45	13.7321
gggggg[=	chr17:35497295-35497578(-)$1	283	49	57	14.0000
hhhhhhhh	chr17:66510874-66511201(+)$1	327	73	81	17.9285
eellleee	chr7:7206199-7206463(+)$1	264	156	164	17.9285
:::::::c	chr7:138269987-138270268(+)$1	281	9	17	16.2321
ddddmmmm	chr14:69261268-69261555(-)$1	287	88	96	17.9285
333fffff	chr1:8071591-8071874(-)$1	283	38	46	14.0892
EEE:::dd	chr13:34411545-34411761(+)$1	216	9	17	16.4107
99999999	chr4:83345577-83345884(-)$1	307	149	157	13.8214
::IIIIII	chr16:24836696-24836982(+)$1	286	3	11	13.6428
2dddd22c	chr10:79800358-79800686(+)$1	328	109	117	13.7321
hhhhhhhh	chr2:169100524-169100815(-)$1	291	113	121	17.9285
gggggggd	chr3:176868678-176868957(-)$1	279	6	14	13.9107
eeemmmme	chr3:171766061-171766298(+)$1	237	6	14	17.9285
dppppppp	chr6:24172436-24172735(-)$1	299	95	103	18.2857
::::::::	chr17:78767079-78767338(+)$1	259	63	71	13.8214
::::::==	chr1:91419337-91419562(-)$1	225	36	44	16.4107
cmmmmccc	chr3:171506135-171506457(-)$1	322	43	51	16.2321
EEEKKAKK	chr11:65194254-65194496(+)$1	242	47	55	17.9285
hhhhh:::	chr9:72821193-72821509(-)$1	316	259	267	14.0892
cc####cc	chr6:1915832-1916083(-)$1	251	36	44	13.6428

#DB
....((((	chr2:32754494-32754782(+)$1	1	94	102	14.0892
...(((((	chr7:47598801-47599059(-)$1	1	55	63	13.7321
((((...(	chr11:65195973-65196215(+)$1	1	67	75	18.2857
.)))))))	chr20:22561599-22561925(-)$1	1	32	40	14.0892
((((....	chr13:113365292-113365541(+)$1	1	218	226	13.8214
........	chr19:40543599-40543880(-)$1	1	34	42	12.3035
)))))...	chr14:35419536-35419842(-)$1	1	68	76	13.7321
))))....	chr3:33429873-33430153(-)$1	1	29	37	17.9285
......))	chr1:11085455-11085737(+)$1	1	7	15	17.9285
........	chr14:24107596-24107879(+)$1	1	222	230	13.6428
))).))))	chr8:40012233-40012487(+)$1	1	211	219	13.9107
((((....	chr6:142659847-142660126(+)$1	1	73	81	13.6428
.(((((((	chr18:46912918-46913219(-)$1	1	32	40	13.6428
........	chr12:11275919-11276203(-)$1	1	69	77	13.9107
)))))...	chr10:67442896-67443185(+)$1	1	116	124	14.1785
.....(((	chr8:97621762-97622015(+)$1	1	53	61	13.8214
.....)))	chrX:108939451-108939705(-)$1	1	222	230	16.4107
.......(	chrX:22012862-22013144(+)$1	1	19	27	13.7321
.((.....	chr7:7206263-7206559(+)$1	1	92	100	17.9285
))))))).	chr15:34500544-34500833(-)$1	1	244	252	18.2857
((....))	chr4:17487977-17488267(-)$1	1	215	223	14.1785
((.((((.	chr19:39669947-39670203(+)$1	1	68	76	13.6428
.(((((..	chr20:8390651-8390874(+)$1	1	33	41	14.0892
(((((((.	chr13:113496400-113496665(+)$1	1	107	115	14.0892
........	chr11:85753117-85753415(-)$1	1	46	54	13.8214
).....))	chr1:91302544-91302829(-)$1	1	199	207	18.2857
(((...))	chr14:21161456-21161729(+)$1	1	56	64	14.0892
...)))))	chr12:11306893-11307157(-)$1	1	238	246	14.1785
...(((((	chr2:11455342-11455633(-)$1	1	69	77	16.2321
........	chr2:73230811-73231119(-)$1	1	242	250	17.9285
......((	chr13:113359783-113360084(+)$1	1	261	269	14.1785
((((((..	chrX:73458266-73458482(-)$1	1	15	23	16.4107
........	chr6:1916749-1917037(-)$1	1	65	73	13.7321
.(((((((	chr17:53372766-53372997(+)$1	1	12	20	13.8214
))))..))	chr3:171904984-171905236(+)$1	1	35	43	17.9285
.))))...	chr2:201207654-201207895(+)$1	1	37	45	13.7321
((((((.(	chr17:35497295-35497578(-)$1	1	49	57	14.0000
((((((((	chr17:66510874-66511201(+)$1	1	73	81	17.9285
((...)))	chr7:7206199-7206463(+)$1	1	156	164	17.9285
.......(	chr7:138269987-138270268(+)$1	1	9	17	16.2321
((((....	chr14:69261268-69261555(-)$1	1	88	96	17.9285
...)))))	chr1:8071591-8071874(-)$1	1	38	46	14.0892
(((...((	chr13:34411545-34411761(+)$1	1	9	17	16.4107
........	chr4:83345577-83345884(-)$1	1	149	157	13.8214
..((((((	chr16:24836696-24836982(+)$1	1	3	11	13.6428
.))))..)	chr10:79800358-79800686(+)$1	1	109	117	13.7321
))))))))	chr2:169100524-169100815(-)$1	1	113	121	17.9285
((((((((	chr3:176868678-176868957(-)$1	1	6	14	13.9107
(((....)	chr3:171766061-171766298(+)$1	1	6	14	17.9285
(.......	chr6:24172436-24172735(-)$1	1	95	103	18.2857
........	chr17:78767079-78767338(+)$1	1	63	71	13.8214
......((	chr1:91419337-91419562(-)$1	1	36	44	16.4107
(....)))	chr3:171506135-171506457(-)$1	1	43	51	16.2321
(((..(..	chr11:65194254-65194496(+)$1	1	47	55	17.9285
)))))...	chr9:72821193-72821509(-)$1	1	259	267	14.0892
((....((	chr6:1915832-1916083(-)$1	1	36	44	13.6428

#PSSM
U : 0.66	u : 0.24	A : 0.07	a : 0.01	
U : 0.64	u : 0.26	A : 0.07	C : 0.01	
U : 0.69	u : 0.19	a : 0.03	A : 0.01	g : 0.01	c : 0.01	G : 0.01	
U : 0.66	u : 0.26	A : 0.03	C : 0.01	G : 0.01	
A : 0.64	a : 0.23	U : 0.03	C : 0.03	g : 0.01	c : 0.01	G : 0.01	
A : 0.66	a : 0.24	C : 0.05	U : 0.01	u : 0.01	
A : 0.69	a : 0.26	U : 0.03	
U : 0.35	A : 0.30	u : 0.10	a : 0.08	g : 0.05	C : 0.05	G : 0.03	

#score	855.2500000000002
#seq	56
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_transcript_m2_run1.nuc.txt

#NT
AGG	chr22:23522678-23522941(+)$1	263	75	78	9.0000
AGG	chr1:28905192-28905433(-)$1	241	36	39	9.0000
agg	chr8:9629474-9629789(+)$1	315	4	7	9.0000
AGG	chr22:19418924-19419268(-)$1	344	31	34	9.0000
AGG	chr10:35625521-35625813(+)$1	292	53	56	9.0000
AGG	chr8:144940390-144940802(-)$1	412	15	18	9.0000
AGG	chr1:173835929-173836179(-)$1	250	49	52	9.0000
AGG	chr12:123994742-123995032(-)$1	290	139	142	9.0000
AGG	chr5:137896676-137896892(-)$1	216	0	3	9.0000
AGG	chr19:10220339-10220549(+)$1	210	22	25	9.0000
AGG	chr6:133136352-133136583(+)$1	231	3	6	9.0000
AGG	chr7:45144136-45144441(-)$1	305	10	13	9.0000
AGG	chr16:89023319-89023608(-)$1	289	23	26	9.0000
AGG	chr5:647970-648252(+)$1	282	27	30	9.0000
AGG	chr11:93454578-93454874(+)$1	296	239	242	9.0000
agg	chr9:139734826-139735104(+)$1	278	2	5	9.0000
AGG	chr7:45144241-45144538(-)$1	297	38	41	9.0000
AGG	chr13:92000677-92000958(+)$1	281	14	17	9.0000
AGG	chr1:31440966-31441180(-)$1	214	13	16	9.0000
AGG	chr5:651415-651716(+)$1	301	5	8	9.0000
agg	chr8:9629638-9629902(+)$1	264	33	36	9.0000
AGG	chrX:20154220-20154509(-)$1	289	42	45	9.0000
AGG	chr19:4037223-4037473(+)$1	250	28	31	9.0000
AGG	chr17:80045175-80045413(-)$1	238	18	21	9.0000
AGG	chr5:137896666-137896876(-)$1	210	183	186	9.0000
AGG	chr19:24187184-24187410(-)$1	226	25	28	9.0000
AGG	chr16:2809272-2809501(+)$1	229	78	81	9.0000
AGG	chr1:31440943-31441165(-)$1	222	6	9	9.0000
agg	chr16:85689999-85690336(+)$1	337	14	17	9.0000
AGG	chr11:93454801-93455112(+)$1	311	16	19	9.0000
AGG	chr19:10220349-10220572(+)$1	223	12	15	9.0000
AGG	chr19:3982436-3982662(-)$1	226	52	55	9.0000
AGG	chr19:24187174-24187384(-)$1	210	28	31	9.0000
AGG	chr6:31802947-31803177(+)$1	230	84	87	9.0000
AGG	chr1:28907247-28907486(-)$1	239	220	223	9.0000
AGG	chr5:137896692-137896899(-)$1	207	0	3	9.0000
AGG	chr17:27049499-27049711(+)$1	212	19	22	9.0000
AGG	chr17:16342770-16343036(+)$1	266	69	72	9.0000
AGG	chr12:110719310-110719663(+)$1	353	5	8	9.0000
AGG	chr17:2232359-2232588(-)$1	229	14	17	9.0000
AGG	chr19:12814338-12814589(-)$1	251	189	192	9.0000
AGG	chr16:88960092-88960377(-)$1	285	0	3	9.0000
AGG	chr9:136217601-136217837(+)$1	236	58	61	9.0000
AGG	chr13:92000553-92000789(+)$1	236	0	3	9.0000
AGG	chrX:20154135-20154420(-)$1	285	27	30	9.0000
AGG	chr2:203142732-203142979(+)$1	247	64	67	9.0000
AGG	chr2:203141052-203141317(+)$1	265	40	43	9.0000
AGG	chr8:1780087-1780376(+)$1	289	42	45	9.0000
agg	chr1:1284370-1284623(-)$1	253	98	101	9.0000
agg	chr9:100777588-100777836(+)$1	248	57	60	9.0000
AGG	chr1:984893-985170(+)$1	277	50	53	9.0000
AGG	chr22:21800173-21800439(+)$1	266	20	23	9.0000
AGG	chr6:31802937-31803147(+)$1	210	94	97	9.0000
AGG	chr5:137896664-137896866(-)$1	202	173	176	9.0000
AGG	chr1:234744798-234745071(-)$1	273	33	36	9.0000

#otherMatches

#Struct PSSM
:CC	chr17:27047463-27047725(+)$1	262	2	5	9.0000
fff	chr22:23522678-23522941(+)$1	263	75	78	9.0000
sss	chr1:28905192-28905433(-)$1	241	36	39	9.0000
:::	chr8:9629474-9629789(+)$1	315	4	7	9.0000
nnn	chr22:19418924-19419268(-)$1	344	31	34	9.0000
!ff	chr10:35625521-35625813(+)$1	292	53	56	9.0000
GGG	chr8:144940390-144940802(-)$1	412	15	18	9.0000
GGG	chr1:173835929-173836179(-)$1	250	49	52	9.0000
ccc	chr12:123994742-123995032(-)$1	290	139	142	9.0000
:::	chr5:137896676-137896892(-)$1	216	0	3	9.0000
f""	chr19:10220339-10220549(+)$1	210	22	25	9.0000
D{A	chr6:133136352-133136583(+)$1	231	3	6	9.0000
EEE	chr7:45144136-45144441(-)$1	305	10	13	9.0000
bb!	chr16:89023319-89023608(-)$1	289	23	26	9.0000
fff	chr5:647970-648252(+)$1	282	27	30	9.0000
#a[	chr11:93454578-93454874(+)$1	296	239	242	9.0000
:BB	chr9:139734826-139735104(+)$1	278	2	5	9.0000
===	chr7:45144241-45144538(-)$1	297	38	41	9.0000
:HH	chr13:92000677-92000958(+)$1	281	14	17	9.0000
ggg	chr1:31440966-31441180(-)$1	214	13	16	9.0000
:::	chr5:651415-651716(+)$1	301	5	8	9.0000
cxx	chr8:9629638-9629902(+)$1	264	33	36	9.0000
]dd	chrX:20154220-20154509(-)$1	289	42	45	9.0000
ddd	chr19:4037223-4037473(+)$1	250	28	31	9.0000
[bb	chr17:80045175-80045413(-)$1	238	18	21	9.0000
_BB	chr5:137896666-137896876(-)$1	210	183	186	9.0000
ggg	chr19:24187184-24187410(-)$1	226	25	28	9.0000
EEE	chr16:2809272-2809501(+)$1	229	78	81	9.0000
KKF	chr1:31440943-31441165(-)$1	222	6	9	9.0000
nnc	chr16:85689999-85690336(+)$1	337	14	17	9.0000
FFF	chr11:93454801-93455112(+)$1	311	16	19	9.0000
f""	chr19:10220349-10220572(+)$1	223	12	15	9.0000
KCC	chr19:3982436-3982662(-)$1	226	52	55	9.0000
::e	chr19:24187174-24187384(-)$1	210	28	31	9.0000
^^^	chr6:31802947-31803177(+)$1	230	84	87	9.0000
lcc	chr1:28907247-28907486(-)$1	239	220	223	9.0000
:cc	chr5:137896692-137896899(-)$1	207	0	3	9.0000
edd	chr17:27049499-27049711(+)$1	212	19	22	9.0000
qqq	chr17:16342770-16343036(+)$1	266	69	72	9.0000
C{A	chr12:110719310-110719663(+)$1	353	5	8	9.0000
FF:	chr17:2232359-2232588(-)$1	229	14	17	9.0000
2bb	chr19:12814338-12814589(-)$1	251	189	192	9.0000
DDD	chr16:88960092-88960377(-)$1	285	0	3	9.0000
ddd	chr9:136217601-136217837(+)$1	236	58	61	9.0000
:::	chr13:92000553-92000789(+)$1	236	0	3	9.0000
:DD	chrX:20154135-20154420(-)$1	285	27	30	9.0000
ggg	chr2:203142732-203142979(+)$1	247	64	67	9.0000
ccc	chr2:203141052-203141317(+)$1	265	40	43	9.0000
HHH	chr8:1780087-1780376(+)$1	289	42	45	9.0000
[dd	chr1:1284370-1284623(-)$1	253	98	101	9.0000
]ee	chr9:100777588-100777836(+)$1	248	57	60	9.0000
ddd	chr1:984893-985170(+)$1	277	50	53	9.0000
qqh	chr22:21800173-21800439(+)$1	266	20	23	9.0000
^^^	chr6:31802937-31803147(+)$1	210	94	97	9.0000
_BB	chr5:137896664-137896866(-)$1	202	173	176	9.0000
:dd	chr1:234744798-234745071(-)$1	273	33	36	9.0000

#DB
.((	chr17:27047463-27047725(+)$1	1	2	5	9.0000
)))	chr22:23522678-23522941(+)$1	1	75	78	9.0000
...	chr1:28905192-28905433(-)$1	1	36	39	9.0000
...	chr8:9629474-9629789(+)$1	1	4	7	9.0000
...	chr22:19418924-19419268(-)$1	1	31	34	9.0000
.((	chr10:35625521-35625813(+)$1	1	53	56	9.0000
(((	chr8:144940390-144940802(-)$1	1	15	18	9.0000
(((	chr1:173835929-173836179(-)$1	1	49	52	9.0000
(((	chr12:123994742-123995032(-)$1	1	139	142	9.0000
...	chr5:137896676-137896892(-)$1	1	0	3	9.0000
(..	chr19:10220339-10220549(+)$1	1	22	25	9.0000
(.(	chr6:133136352-133136583(+)$1	1	3	6	9.0000
(((	chr7:45144136-45144441(-)$1	1	10	13	9.0000
((.	chr16:89023319-89023608(-)$1	1	23	26	9.0000
)))	chr5:647970-648252(+)$1	1	27	30	9.0000
.(.	chr11:93454578-93454874(+)$1	1	239	242	9.0000
.((	chr9:139734826-139735104(+)$1	1	2	5	9.0000
)))	chr7:45144241-45144538(-)$1	1	38	41	9.0000
.((	chr13:92000677-92000958(+)$1	1	14	17	9.0000
(((	chr1:31440966-31441180(-)$1	1	13	16	9.0000
...	chr5:651415-651716(+)$1	1	5	8	9.0000
(..	chr8:9629638-9629902(+)$1	1	33	36	9.0000
.))	chrX:20154220-20154509(-)$1	1	42	45	9.0000
(((	chr19:4037223-4037473(+)$1	1	28	31	9.0000
.((	chr17:80045175-80045413(-)$1	1	18	21	9.0000
.))	chr5:137896666-137896876(-)$1	1	183	186	9.0000
)))	chr19:24187184-24187410(-)$1	1	25	28	9.0000
(((	chr16:2809272-2809501(+)$1	1	78	81	9.0000
..(	chr1:31440943-31441165(-)$1	1	6	9	9.0000
..)	chr16:85689999-85690336(+)$1	1	14	17	9.0000
(((	chr11:93454801-93455112(+)$1	1	16	19	9.0000
(..	chr19:10220349-10220572(+)$1	1	12	15	9.0000
.((	chr19:3982436-3982662(-)$1	1	52	55	9.0000
..(	chr19:24187174-24187384(-)$1	1	28	31	9.0000
...	chr6:31802947-31803177(+)$1	1	84	87	9.0000
.))	chr1:28907247-28907486(-)$1	1	220	223	9.0000
.((	chr5:137896692-137896899(-)$1	1	0	3	9.0000
(((	chr17:27049499-27049711(+)$1	1	19	22	9.0000
...	chr17:16342770-16343036(+)$1	1	69	72	9.0000
(.(	chr12:110719310-110719663(+)$1	1	5	8	9.0000
((.	chr17:2232359-2232588(-)$1	1	14	17	9.0000
.))	chr19:12814338-12814589(-)$1	1	189	192	9.0000
(((	chr16:88960092-88960377(-)$1	1	0	3	9.0000
)))	chr9:136217601-136217837(+)$1	1	58	61	9.0000
...	chr13:92000553-92000789(+)$1	1	0	3	9.0000
.((	chrX:20154135-20154420(-)$1	1	27	30	9.0000
(((	chr2:203142732-203142979(+)$1	1	64	67	9.0000
(((	chr2:203141052-203141317(+)$1	1	40	43	9.0000
(((	chr8:1780087-1780376(+)$1	1	42	45	9.0000
.((	chr1:1284370-1284623(-)$1	1	98	101	9.0000
.))	chr9:100777588-100777836(+)$1	1	57	60	9.0000
)))	chr1:984893-985170(+)$1	1	50	53	9.0000
..)	chr22:21800173-21800439(+)$1	1	20	23	9.0000
...	chr6:31802937-31803147(+)$1	1	94	97	9.0000
.))	chr5:137896664-137896866(-)$1	1	173	176	9.0000
.((	chr1:234744798-234745071(-)$1	1	33	36	9.0000

#PSSM
A : 0.89	a : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	

#score	504.00000000000006
#seq	56
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_UTR_m3_run2.nuc.txt

#NT
AACCCA	chr17:7082263-7082510(-)$1	247	58	64	11.4375
CACCCG	chr11:2152426-2152628(-)$1	202	195	201	11.3593
CACCCA	chr11:2152281-2152490(-)$1	209	194	200	14.6406
UACCCA	chr3:185637074-185637362(-)$1	288	231	237	10.9687
CACCCC	chr11:2153209-2153417(-)$1	208	15	21	10.9687
AACCCA	chr11:2153487-2153693(-)$1	206	152	158	11.4375
CACCCG	chr11:2152326-2152530(-)$1	204	97	103	11.3593
CCCCCA	chr11:2159523-2159738(-)$1	215	115	121	11.2812
CCCCCA	chr1:249151582-249151903(-)$1	321	192	198	11.2812
AACCCA	chr11:2972896-2973152(-)$1	256	237	243	11.4375
CACCCU	chr19:1258720-1258984(+)$1	264	248	254	10.9687
CACCCG	chr11:2152419-2152622(-)$1	203	189	195	11.3593
AACCCA	chr11:2153380-2153601(-)$1	221	60	66	11.4375
GACCCA	chr11:2153275-2153493(-)$1	218	11	17	11.2031
CACCCA	chr19:51305369-51305605(-)$1	236	112	118	14.6406
CACCCG	chr11:2152349-2152561(-)$1	212	128	134	11.3593
caccca	chr11:2152549-2152761(-)$1	212	71	77	14.6406
CACCCC	chr11:2153246-2153457(-)$1	211	55	61	10.9687
CACCCA	chr11:2152249-2152459(-)$1	210	163	169	14.6406
GACCCA	chr11:2154000-2154236(-)$1	236	143	149	11.2031
CACCCA	chr8:27529230-27529502(+)$1	272	261	267	14.6406
cacCCC	chr11:2152450-2152656(-)$1	206	2	8	10.9687
CACCCA	chr11:2152274-2152481(-)$1	207	185	191	14.6406
CUCCCA	chr7:5346649-5346903(-)$1	254	135	141	11.1250
CCCCCA	chr16:2820980-2821299(+)$1	319	311	317	11.2812
CACCCU	chr11:85374299-85374564(-)$1	265	139	145	10.9687
CCCCCA	chr11:2152019-2152224(-)$1	205	26	32	11.2812
AACCCA	chr12:121416414-121416660(+)$1	246	89	95	11.4375
CACCCA	chr11:2152234-2152441(-)$1	207	145	151	14.6406
caccca	chr11:2152677-2152880(-)$1	203	190	196	14.6406
CUCCCA	chr8:144989655-144989913(-)$1	258	8	14	11.1250
AACCCA	chr17:7082222-7082463(-)$1	241	11	17	11.4375
caccca	chr9:97845750-97846067(+)$1	317	45	51	14.6406
CACCCA	chr19:8550387-8550687(+)$1	300	68	74	14.6406
CCCCCA	chr2:208576454-208576744(+)$1	290	194	200	11.2812
caccca	chr11:2152612-2152816(-)$1	204	126	132	14.6406
CCCCCA	chr11:2159497-2159707(-)$1	210	84	90	11.2812
CACCCU	chr18:55711519-55711770(+)$1	251	216	222	10.9687
CACCCG	chr11:2152415-2152619(-)$1	204	186	192	11.3593
AACCCA	chr11:2153415-2153622(-)$1	207	81	87	11.4375
CACCCG	chr11:2152342-2152549(-)$1	207	116	122	11.3593
CACCCG	chr11:2152334-2152542(-)$1	208	109	115	11.3593
CACCCA	chr11:2152121-2152328(-)$1	207	32	38	14.6406
CUCCCA	chr9:97848115-97848353(+)$1	238	141	147	11.1250
CUCCCA	chr2:202001739-202002029(+)$1	290	279	285	11.1250
CACCCA	chr11:2152259-2152474(-)$1	215	178	184	14.6406
CGCCCA	chr2:9563216-9563508(-)$1	292	12	18	10.8906
UACCCA	chr6:170892649-170892910(-)$1	261	90	96	10.9687
caccca	chr11:2152644-2152848(-)$1	204	158	164	14.6406
GACCCA	chr11:2153940-2154152(-)$1	212	59	65	11.2031
AACCCA	chr3:9862070-9862298(+)$1	228	188	194	11.4375
caccca	chr11:2152530-2152741(-)$1	211	51	57	14.6406
caccca	chr11:2152509-2152730(-)$1	221	40	46	14.6406
CACCCA	chr11:2152092-2152296(-)$1	204	0	6	14.6406
CCCCCA	chr11:72423483-72423761(-)$1	278	154	160	11.2812
CACCCA	chr11:2152243-2152449(-)$1	206	153	159	14.6406
CGCCCA	chr16:279078-279345(-)$1	267	12	18	10.8906
CACCCG	chr11:2152361-2152570(-)$1	209	137	143	11.3593
GACCCA	chr11:2153992-2154200(-)$1	208	107	113	11.2031
CACCCA	chr16:4737325-4737569(+)$1	244	204	210	14.6406
CACCCA	chr11:2152149-2152376(-)$1	227	80	86	14.6406
GACCCA	chr11:2153983-2154189(-)$1	206	96	102	11.2031
CUCCCA	chr7:5346534-5346824(-)$1	290	56	62	11.1250

#otherMatches

#Struct PSSM
ccaccc	chr11:2152096-2152311(-)$1	215	15	21	14.6406
]dddd:	chr17:7082263-7082510(-)$1	247	58	64	11.4375
cc::::	chr11:2152426-2152628(-)$1	202	195	201	11.3593
::::::	chr11:2152281-2152490(-)$1	209	194	200	14.6406
II::::	chr3:185637074-185637362(-)$1	288	231	237	10.9687
::::::	chr11:2153209-2153417(-)$1	208	15	21	10.9687
::::::	chr11:2153487-2153693(-)$1	206	152	158	11.4375
=====u	chr11:2152326-2152530(-)$1	204	97	103	11.3593
::::::	chr11:2159523-2159738(-)$1	215	115	121	11.2812
FHHHHH	chr1:249151582-249151903(-)$1	321	192	198	11.2812
~~FFFF	chr11:2972896-2973152(-)$1	256	237	243	11.4375
C}BBII	chr19:1258720-1258984(+)$1	264	248	254	10.9687
eeeeel	chr11:2152419-2152622(-)$1	203	189	195	11.3593
::ccc"	chr11:2153380-2153601(-)$1	221	60	66	11.4375
DDMMMM	chr11:2153275-2153493(-)$1	218	11	17	11.2031
22ccc2	chr19:51305369-51305605(-)$1	236	112	118	14.6406
=====u	chr11:2152349-2152561(-)$1	212	128	134	11.3593
ccoooo	chr11:2152549-2152761(-)$1	212	71	77	14.6406
wwwwwd	chr11:2153246-2153457(-)$1	211	55	61	10.9687
H}GGGG	chr11:2152249-2152459(-)$1	210	163	169	14.6406
tteeee	chr11:2154000-2154236(-)$1	236	143	149	11.2031
mmmccc	chr8:27529230-27529502(+)$1	272	261	267	14.6406
:::::c	chr11:2152450-2152656(-)$1	206	2	8	10.9687
H}DDDD	chr11:2152274-2152481(-)$1	207	185	191	14.6406
EEEMMM	chr7:5346649-5346903(-)$1	254	135	141	11.1250
bb::::	chr16:2820980-2821299(+)$1	319	311	317	11.2812
fff[dd	chr11:85374299-85374564(-)$1	265	139	145	10.9687
NNFFFF	chr11:2152019-2152224(-)$1	205	26	32	11.2812
d!!iii	chr12:121416414-121416660(+)$1	246	89	95	11.4375
H}CCCY	chr11:2152234-2152441(-)$1	207	145	151	14.6406
888888	chr11:2152677-2152880(-)$1	203	190	196	14.6406
&&&&&&	chr8:144989655-144989913(-)$1	258	8	14	11.1250
::FFFF	chr17:7082222-7082463(-)$1	241	11	17	11.4375
LLLCCC	chr9:97845750-97846067(+)$1	317	45	51	14.6406
::dddd	chr19:8550387-8550687(+)$1	300	68	74	14.6406
GGGGZZ	chr2:208576454-208576744(+)$1	290	194	200	11.2812
ccoooo	chr11:2152612-2152816(-)$1	204	126	132	14.6406
::::::	chr11:2159497-2159707(-)$1	210	84	90	11.2812
b]dddd	chr18:55711519-55711770(+)$1	251	216	222	10.9687
eeeeel	chr11:2152415-2152619(-)$1	204	186	192	11.3593
::ccc"	chr11:2153415-2153622(-)$1	207	81	87	11.4375
eeeeel	chr11:2152342-2152549(-)$1	207	116	122	11.3593
=====u	chr11:2152334-2152542(-)$1	208	109	115	11.3593
ccaccc	chr11:2152121-2152328(-)$1	207	32	38	14.6406
hhhh33	chr9:97848115-97848353(+)$1	238	141	147	11.1250
fff]dd	chr2:202001739-202002029(+)$1	290	279	285	11.1250
H}GGGG	chr11:2152259-2152474(-)$1	215	178	184	14.6406
EEEEE{	chr2:9563216-9563508(-)$1	292	12	18	10.8906
ccc22f	chr6:170892649-170892910(-)$1	261	90	96	10.9687
ccoooo	chr11:2152644-2152848(-)$1	204	158	164	14.6406
EE:FFF	chr11:2153940-2154152(-)$1	212	59	65	11.2031
qqqbb2	chr3:9862070-9862298(+)$1	228	188	194	11.4375
ccoooo	chr11:2152530-2152741(-)$1	211	51	57	14.6406
ccoooo	chr11:2152509-2152730(-)$1	221	40	46	14.6406
::DDDD	chr11:2152092-2152296(-)$1	204	0	6	14.6406
fffffB	chr11:72423483-72423761(-)$1	278	154	160	11.2812
H}CCCY	chr11:2152243-2152449(-)$1	206	153	159	14.6406
cccmmm	chr16:279078-279345(-)$1	267	12	18	10.8906
=====u	chr11:2152361-2152570(-)$1	209	137	143	11.3593
tteeee	chr11:2153992-2154200(-)$1	208	107	113	11.2031
:::BB}	chr16:4737325-4737569(+)$1	244	204	210	14.6406
ccaccc	chr11:2152149-2152376(-)$1	227	80	86	14.6406
tteeee	chr11:2153983-2154189(-)$1	206	96	102	11.2031
EEEMMM	chr7:5346534-5346824(-)$1	290	56	62	11.1250

#DB
((((((	chr11:2152096-2152311(-)$1	1	15	21	14.6406
.)))).	chr17:7082263-7082510(-)$1	1	58	64	11.4375
))....	chr11:2152426-2152628(-)$1	1	195	201	11.3593
......	chr11:2152281-2152490(-)$1	1	194	200	14.6406
))....	chr3:185637074-185637362(-)$1	1	231	237	10.9687
......	chr11:2153209-2153417(-)$1	1	15	21	10.9687
......	chr11:2153487-2153693(-)$1	1	152	158	11.4375
(((((.	chr11:2152326-2152530(-)$1	1	97	103	11.3593
......	chr11:2159523-2159738(-)$1	1	115	121	11.2812
))))))	chr1:249151582-249151903(-)$1	1	192	198	11.2812
..))))	chr11:2972896-2973152(-)$1	1	237	243	11.4375
).))))	chr19:1258720-1258984(+)$1	1	248	254	10.9687
(((((.	chr11:2152419-2152622(-)$1	1	189	195	11.3593
..(((.	chr11:2153380-2153601(-)$1	1	60	66	11.4375
((....	chr11:2153275-2153493(-)$1	1	11	17	11.2031
..))).	chr19:51305369-51305605(-)$1	1	112	118	14.6406
(((((.	chr11:2152349-2152561(-)$1	1	128	134	11.3593
((....	chr11:2152549-2152761(-)$1	1	71	77	14.6406
.....)	chr11:2153246-2153457(-)$1	1	55	61	10.9687
).))))	chr11:2152249-2152459(-)$1	1	163	169	14.6406
..))))	chr11:2154000-2154236(-)$1	1	143	149	11.2031
...)))	chr8:27529230-27529502(+)$1	1	261	267	14.6406
.....(	chr11:2152450-2152656(-)$1	1	2	8	10.9687
).))))	chr11:2152274-2152481(-)$1	1	185	191	14.6406
(((...	chr7:5346649-5346903(-)$1	1	135	141	11.1250
))....	chr16:2820980-2821299(+)$1	1	311	317	11.2812
(((.((	chr11:85374299-85374564(-)$1	1	139	145	10.9687
..((((	chr11:2152019-2152224(-)$1	1	26	32	11.2812
(..(((	chr12:121416414-121416660(+)$1	1	89	95	11.4375
).))).	chr11:2152234-2152441(-)$1	1	145	151	14.6406
......	chr11:2152677-2152880(-)$1	1	190	196	14.6406
......	chr8:144989655-144989913(-)$1	1	8	14	11.1250
..((((	chr17:7082222-7082463(-)$1	1	11	17	11.4375
...(((	chr9:97845750-97846067(+)$1	1	45	51	14.6406
..((((	chr19:8550387-8550687(+)$1	1	68	74	14.6406
))))..	chr2:208576454-208576744(+)$1	1	194	200	11.2812
((....	chr11:2152612-2152816(-)$1	1	126	132	14.6406
......	chr11:2159497-2159707(-)$1	1	84	90	11.2812
).))))	chr18:55711519-55711770(+)$1	1	216	222	10.9687
(((((.	chr11:2152415-2152619(-)$1	1	186	192	11.3593
..(((.	chr11:2153415-2153622(-)$1	1	81	87	11.4375
(((((.	chr11:2152342-2152549(-)$1	1	116	122	11.3593
(((((.	chr11:2152334-2152542(-)$1	1	109	115	11.3593
((((((	chr11:2152121-2152328(-)$1	1	32	38	14.6406
))))..	chr9:97848115-97848353(+)$1	1	141	147	11.1250
))).))	chr2:202001739-202002029(+)$1	1	279	285	11.1250
).))))	chr11:2152259-2152474(-)$1	1	178	184	14.6406
(((((.	chr2:9563216-9563508(-)$1	1	12	18	10.8906
)))..)	chr6:170892649-170892910(-)$1	1	90	96	10.9687
((....	chr11:2152644-2152848(-)$1	1	158	164	14.6406
)).(((	chr11:2153940-2154152(-)$1	1	59	65	11.2031
...)).	chr3:9862070-9862298(+)$1	1	188	194	11.4375
((....	chr11:2152530-2152741(-)$1	1	51	57	14.6406
((....	chr11:2152509-2152730(-)$1	1	40	46	14.6406
..((((	chr11:2152092-2152296(-)$1	1	0	6	14.6406
))))))	chr11:72423483-72423761(-)$1	1	154	160	11.2812
).))).	chr11:2152243-2152449(-)$1	1	153	159	14.6406
(((...	chr16:279078-279345(-)$1	1	12	18	10.8906
(((((.	chr11:2152361-2152570(-)$1	1	137	143	11.3593
..))))	chr11:2153992-2154200(-)$1	1	107	113	11.2031
...)).	chr16:4737325-4737569(+)$1	1	204	210	14.6406
((((((	chr11:2152149-2152376(-)$1	1	80	86	14.6406
..))))	chr11:2153983-2154189(-)$1	1	96	102	11.2031
(((...	chr7:5346534-5346824(-)$1	1	56	62	11.1250

#PSSM
C : 0.64	A : 0.12	c : 0.12	G : 0.07	U : 0.03	
A : 0.65	a : 0.12	C : 0.10	U : 0.07	G : 0.03	
C : 0.87	c : 0.12	
C : 0.89	c : 0.10	
C : 0.89	c : 0.10	
A : 0.67	G : 0.12	a : 0.10	C : 0.04	U : 0.04	

#score	789.96875
#seq	64
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_CDS_m3_run2.nuc.txt

#NT
UGA	chr12:57037536-57037764(-)$1	228	40	43	8.9999
UGA	chr20:34135147-34135357(+)$1	210	33	36	8.9999
UGA	chr7:120770121-120770379(+)$1	258	38	41	8.9999
UGA	chr21:30437228-30437476(-)$1	248	23	26	8.9999
UGA	chr3:57561249-57561486(-)$1	237	5	8	8.9999
UGA	chr14:31619102-31619357(-)$1	255	34	37	8.9999
UGA	chr17:17152136-17152390(-)$1	254	11	14	8.9999
UGA	chr9:15459619-15459872(+)$1	253	59	62	8.9999
UGA	chr22:21288169-21288390(+)$1	221	26	29	8.9999
UGA	chr17:26901411-26901630(-)$1	219	61	64	8.9999
UGA	chr12:49578698-49578963(-)$1	265	62	65	8.9999
UGA	chr22:38259177-38259418(+)$1	241	69	72	8.9999
UGA	chr2:10263820-10264065(+)$1	245	160	163	8.9999
UGA	chr2:228388395-228388620(+)$1	225	29	32	8.9999
UGA	chr4:83799827-83800046(-)$1	219	27	30	8.9999
UGA	chr3:155628473-155628760(+)$1	287	17	20	8.9999
UGA	chr11:18425143-18425361(+)$1	218	34	37	8.9999
UGA	chr1:116936242-116936447(+)$1	205	35	38	8.9999
UGA	chr7:100275631-100275888(+)$1	257	104	107	8.9999
UGA	chr1:40207465-40207694(+)$1	229	27	30	8.9999
UGA	chr4:108955399-108955650(+)$1	251	2	5	8.9999
UGA	chr20:49221134-49221410(-)$1	276	46	49	8.9999
UGA	chr15:74704186-74704456(-)$1	270	7	10	8.9999
UGA	chr5:132223447-132223733(-)$1	286	70	73	8.9999
UGA	chr1:11292393-11292649(-)$1	256	80	83	8.9999
UGA	chr11:3047885-3048105(-)$1	220	22	25	8.9999
UGA	chr1:207934622-207934892(+)$1	270	23	26	8.9999
UGA	chr16:58149220-58149462(-)$1	242	75	78	8.9999
UGA	chr11:63743614-63743879(+)$1	265	45	48	8.9999
UGA	chr5:138643327-138643594(+)$1	267	145	148	8.9999
UGA	chr16:1872765-1873130(-)$1	365	69	72	8.9999
UGA	chr15:58257847-58258090(-)$1	243	11	14	8.9999
UGA	chr11:82550212-82550452(-)$1	240	1	4	8.9999
UGA	chr6:159190864-159191075(-)$1	211	62	65	8.9999
UGA	chr17:4793712-4794007(+)$1	295	69	72	8.9999
UGA	chr1:23407899-23408166(+)$1	267	97	100	8.9999
UGA	chr11:118923301-118923511(-)$1	210	39	42	8.9999
UGA	chr7:6076955-6077216(-)$1	261	15	18	8.9999
UGA	chr11:18418351-18418598(+)$1	247	60	63	8.9999
UGA	chr3:197483269-197483528(+)$1	259	7	10	8.9999
UGA	chr19:10254467-10254763(-)$1	296	6	9	8.9999
UGA	chr10:79800272-79800474(+)$1	202	17	20	8.9999
UGA	chr1:93812078-93812363(+)$1	285	48	51	8.9999
UGA	chr9:125639669-125639928(-)$1	259	8	11	8.9999
UGA	chr8:124195174-124195438(+)$1	264	2	5	8.9999
UGA	chr2:47389392-47389631(-)$1	239	7	10	8.9999
UGA	chr1:78206461-78206723(-)$1	262	125	128	8.9999
UGA	chr1:26612269-26612572(-)$1	303	0	3	8.9999
UGA	chr6:44219681-44219904(+)$1	223	13	16	8.9999
UGA	chr14:23495325-23495613(-)$1	288	48	51	8.9999
UGA	chr7:99693609-99693847(-)$1	238	111	114	8.9999
UGA	chr1:226109536-226109846(-)$1	310	71	74	8.9999
UGA	chr11:102221109-102221375(+)$1	266	17	20	8.9999
UGA	chr5:43292476-43292745(-)$1	269	43	46	8.9999
UGA	chr19:49993631-49993833(+)$1	202	25	28	8.9999
UGA	chr5:175957048-175957297(-)$1	249	16	19	8.9999
UGA	chr12:49399140-49399410(-)$1	270	60	63	8.9999
UGA	chr7:135099892-135100111(-)$1	219	13	16	8.9999
UGA	chr5:1802348-1802581(+)$1	233	17	20	8.9999
UGA	chr17:66525019-66525233(+)$1	214	25	28	8.9999
uga	chr9:19345818-19346085(+)$1	267	0	3	8.9999
UGA	chrX:53244982-53245261(-)$1	279	116	119	8.9999
UGA	chr5:10402453-10402664(+)$1	211	26	29	8.9999
Uga	chr1:245027287-245027504(-)$1	217	143	146	8.9999
UGA	chr10:71136661-71136866(+)$1	205	31	34	8.9999
UGA	chr3:167746908-167747177(-)$1	269	20	23	8.9999
UGA	chr4:74017080-74017348(-)$1	268	168	171	8.9999
UGA	chr2:113416377-113416607(+)$1	230	46	49	8.9999
UGA	chr12:110437486-110437689(+)$1	203	104	107	8.9999
UGA	chr8:56879174-56879443(+)$1	269	129	132	8.9999
UGA	chr17:49238990-49239261(+)$1	271	75	78	8.9999
UGA	chr17:42266755-42267063(+)$1	308	0	3	8.9999
UGA	chr2:158157092-158157362(+)$1	270	43	46	8.9999
UGA	chrX:39930787-39931047(-)$1	260	58	61	8.9999
UGA	chr1:39907729-39908070(+)$1	341	18	21	8.9999
UGA	chr2:174946620-174946876(-)$1	256	15	18	8.9999
UGA	chr10:33214864-33215136(-)$1	272	17	20	8.9999
UGA	chr17:73845653-73845868(-)$1	215	21	24	8.9999
UGA	chr7:100853728-100854014(-)$1	286	0	3	8.9999
UGA	chr17:64731531-64731871(+)$1	340	61	64	8.9999
UGA	chr15:72499062-72499268(-)$1	206	0	3	8.9999
UGA	chr10:13364822-13365054(-)$1	232	47	50	8.9999
UGA	chr1:12012658-12012893(+)$1	235	214	217	8.9999
UGA	chr9:140083422-140083681(+)$1	259	5	8	8.9999
UGA	chr1:160268879-160269092(-)$1	213	13	16	8.9999
UGA	chr11:72465836-72466172(-)$1	336	228	231	8.9999
UGA	chr9:2811465-2811674(-)$1	209	1	4	8.9999
UGA	chr2:25061369-25061592(-)$1	223	52	55	8.9999
UGA	chr1:19488998-19489206(-)$1	208	8	11	8.9999
UGA	chr1:15969961-15970246(+)$1	285	33	36	8.9999
UGA	chr11:62396193-62396436(-)$1	243	97	100	8.9999
UGA	chr6:70407354-70407597(-)$1	243	78	81	8.9999
UGA	chr7:105190609-105190872(+)$1	263	100	103	8.9999
UGA	chr14:58701042-58701303(+)$1	261	127	130	8.9999
UGA	chr1:93300241-93300446(+)$1	205	23	26	8.9999
UGA	chr11:62327172-62327384(-)$1	212	5	8	8.9999

#otherMatches

#Struct PSSM
PEE	chr3:47908632-47908885(-)$1	253	79	82	8.9999
mmm	chr12:57037536-57037764(-)$1	228	40	43	8.9999
ddd	chr20:34135147-34135357(+)$1	210	33	36	8.9999
:::	chr7:120770121-120770379(+)$1	258	38	41	8.9999
fff	chr21:30437228-30437476(-)$1	248	23	26	8.9999
eoo	chr3:57561249-57561486(-)$1	237	5	8	8.9999
ddd	chr14:31619102-31619357(-)$1	255	34	37	8.9999
HHH	chr17:17152136-17152390(-)$1	254	11	14	8.9999
:::	chr9:15459619-15459872(+)$1	253	59	62	8.9999
f]b	chr22:21288169-21288390(+)$1	221	26	29	8.9999
d%%	chr17:26901411-26901630(-)$1	219	61	64	8.9999
c[a	chr12:49578698-49578963(-)$1	265	62	65	8.9999
gg4	chr22:38259177-38259418(+)$1	241	69	72	8.9999
ddt	chr2:10263820-10264065(+)$1	245	160	163	8.9999
eee	chr2:228388395-228388620(+)$1	225	29	32	8.9999
eee	chr4:83799827-83800046(-)$1	219	27	30	8.9999
xxx	chr3:155628473-155628760(+)$1	287	17	20	8.9999
^^^	chr11:18425143-18425361(+)$1	218	34	37	8.9999
]ee	chr1:116936242-116936447(+)$1	205	35	38	8.9999
ee]	chr7:100275631-100275888(+)$1	257	104	107	8.9999
mmd	chr1:40207465-40207694(+)$1	229	27	30	8.9999
cc[	chr4:108955399-108955650(+)$1	251	2	5	8.9999
ff4	chr20:49221134-49221410(-)$1	276	46	49	8.9999
[cc	chr15:74704186-74704456(-)$1	270	7	10	8.9999
!!b	chr5:132223447-132223733(-)$1	286	70	73	8.9999
===	chr1:11292393-11292649(-)$1	256	80	83	8.9999
eee	chr11:3047885-3048105(-)$1	220	22	25	8.9999
GGG	chr1:207934622-207934892(+)$1	270	23	26	8.9999
fff	chr16:58149220-58149462(-)$1	242	75	78	8.9999
qqq	chr11:63743614-63743879(+)$1	265	45	48	8.9999
nnn	chr5:138643327-138643594(+)$1	267	145	148	8.9999
BKK	chr16:1872765-1873130(-)$1	365	69	72	8.9999
eee	chr15:58257847-58258090(-)$1	243	11	14	8.9999
CCC	chr11:82550212-82550452(-)$1	240	1	4	8.9999
eee	chr6:159190864-159191075(-)$1	211	62	65	8.9999
cc[	chr17:4793712-4794007(+)$1	295	69	72	8.9999
b[b	chr1:23407899-23408166(+)$1	267	97	100	8.9999
::f	chr11:118923301-118923511(-)$1	210	39	42	8.9999
H==	chr7:6076955-6077216(-)$1	261	15	18	8.9999
:dd	chr11:18418351-18418598(+)$1	247	60	63	8.9999
FFF	chr3:197483269-197483528(+)$1	259	7	10	8.9999
eee	chr19:10254467-10254763(-)$1	296	6	9	8.9999
d$$	chr10:79800272-79800474(+)$1	202	17	20	8.9999
bbc	chr1:93812078-93812363(+)$1	285	48	51	8.9999
EEE	chr9:125639669-125639928(-)$1	259	8	11	8.9999
DD:	chr8:124195174-124195438(+)$1	264	2	5	8.9999
c[c	chr2:47389392-47389631(-)$1	239	7	10	8.9999
hvv	chr1:78206461-78206723(-)$1	262	125	128	8.9999
:::	chr1:26612269-26612572(-)$1	303	0	3	8.9999
A{D	chr6:44219681-44219904(+)$1	223	13	16	8.9999
55f	chr14:23495325-23495613(-)$1	288	48	51	8.9999
gge	chr7:99693609-99693847(-)$1	238	111	114	8.9999
JJJ	chr1:226109536-226109846(-)$1	310	71	74	8.9999
EEE	chr11:102221109-102221375(+)$1	266	17	20	8.9999
GWW	chr5:43292476-43292745(-)$1	269	43	46	8.9999
g::	chr19:49993631-49993833(+)$1	202	25	28	8.9999
{BB	chr5:175957048-175957297(-)$1	249	16	19	8.9999
KKC	chr12:49399140-49399410(-)$1	270	60	63	8.9999
%ii	chr7:135099892-135100111(-)$1	219	13	16	8.9999
e[c	chr5:1802348-1802581(+)$1	233	17	20	8.9999
E::	chr17:66525019-66525233(+)$1	214	25	28	8.9999
:::	chr9:19345818-19346085(+)$1	267	0	3	8.9999
fff	chrX:53244982-53245261(-)$1	279	116	119	8.9999
MMF	chr5:10402453-10402664(+)$1	211	26	29	8.9999
c::	chr1:245027287-245027504(-)$1	217	143	146	8.9999
rff	chr10:71136661-71136866(+)$1	205	31	34	8.9999
%%%	chr3:167746908-167747177(-)$1	269	20	23	8.9999
]ee	chr4:74017080-74017348(-)$1	268	168	171	8.9999
e!!	chr2:113416377-113416607(+)$1	230	46	49	8.9999
dd:	chr12:110437486-110437689(+)$1	203	104	107	8.9999
dd:	chr8:56879174-56879443(+)$1	269	129	132	8.9999
{BB	chr17:49238990-49239261(+)$1	271	75	78	8.9999
:::	chr17:42266755-42267063(+)$1	308	0	3	8.9999
qqq	chr2:158157092-158157362(+)$1	270	43	46	8.9999
fxx	chrX:39930787-39931047(-)$1	260	58	61	8.9999
iii	chr1:39907729-39908070(+)$1	341	18	21	8.9999
b[b	chr2:174946620-174946876(-)$1	256	15	18	8.9999
===	chr10:33214864-33215136(-)$1	272	17	20	8.9999
B{B	chr17:73845653-73845868(-)$1	215	21	24	8.9999
::B	chr7:100853728-100854014(-)$1	286	0	3	8.9999
NA{	chr17:64731531-64731871(+)$1	340	61	64	8.9999
:::	chr15:72499062-72499268(-)$1	206	0	3	8.9999
bbm	chr10:13364822-13365054(-)$1	232	47	50	8.9999
HHH	chr1:12012658-12012893(+)$1	235	214	217	8.9999
{EE	chr9:140083422-140083681(+)$1	259	5	8	8.9999
RRR	chr1:160268879-160269092(-)$1	213	13	16	8.9999
c22	chr11:72465836-72466172(-)$1	336	228	231	8.9999
:ff	chr9:2811465-2811674(-)$1	209	1	4	8.9999
ooo	chr2:25061369-25061592(-)$1	223	52	55	8.9999
DDD	chr1:19488998-19489206(-)$1	208	8	11	8.9999
d!!	chr1:15969961-15970246(+)$1	285	33	36	8.9999
hhh	chr11:62396193-62396436(-)$1	243	97	100	8.9999
eee	chr6:70407354-70407597(-)$1	243	78	81	8.9999
$$$	chr7:105190609-105190872(+)$1	263	100	103	8.9999
b33	chr14:58701042-58701303(+)$1	261	127	130	8.9999
ggg	chr1:93300241-93300446(+)$1	205	23	26	8.9999
:::	chr11:62327172-62327384(-)$1	212	5	8	8.9999

#DB
.((	chr3:47908632-47908885(-)$1	1	79	82	8.9999
...	chr12:57037536-57037764(-)$1	1	40	43	8.9999
(((	chr20:34135147-34135357(+)$1	1	33	36	8.9999
...	chr7:120770121-120770379(+)$1	1	38	41	8.9999
(((	chr21:30437228-30437476(-)$1	1	23	26	8.9999
(..	chr3:57561249-57561486(-)$1	1	5	8	8.9999
)))	chr14:31619102-31619357(-)$1	1	34	37	8.9999
(((	chr17:17152136-17152390(-)$1	1	11	14	8.9999
...	chr9:15459619-15459872(+)$1	1	59	62	8.9999
).)	chr22:21288169-21288390(+)$1	1	26	29	8.9999
(..	chr17:26901411-26901630(-)$1	1	61	64	8.9999
(.(	chr12:49578698-49578963(-)$1	1	62	65	8.9999
)).	chr22:38259177-38259418(+)$1	1	69	72	8.9999
((.	chr2:10263820-10264065(+)$1	1	160	163	8.9999
)))	chr2:228388395-228388620(+)$1	1	29	32	8.9999
(((	chr4:83799827-83800046(-)$1	1	27	30	8.9999
...	chr3:155628473-155628760(+)$1	1	17	20	8.9999
...	chr11:18425143-18425361(+)$1	1	34	37	8.9999
.))	chr1:116936242-116936447(+)$1	1	35	38	8.9999
)).	chr7:100275631-100275888(+)$1	1	104	107	8.9999
..)	chr1:40207465-40207694(+)$1	1	27	30	8.9999
((.	chr4:108955399-108955650(+)$1	1	2	5	8.9999
)).	chr20:49221134-49221410(-)$1	1	46	49	8.9999
.((	chr15:74704186-74704456(-)$1	1	7	10	8.9999
..(	chr5:132223447-132223733(-)$1	1	70	73	8.9999
)))	chr1:11292393-11292649(-)$1	1	80	83	8.9999
)))	chr11:3047885-3048105(-)$1	1	22	25	8.9999
(((	chr1:207934622-207934892(+)$1	1	23	26	8.9999
(((	chr16:58149220-58149462(-)$1	1	75	78	8.9999
...	chr11:63743614-63743879(+)$1	1	45	48	8.9999
...	chr5:138643327-138643594(+)$1	1	145	148	8.9999
(..	chr16:1872765-1873130(-)$1	1	69	72	8.9999
(((	chr15:58257847-58258090(-)$1	1	11	14	8.9999
(((	chr11:82550212-82550452(-)$1	1	1	4	8.9999
(((	chr6:159190864-159191075(-)$1	1	62	65	8.9999
((.	chr17:4793712-4794007(+)$1	1	69	72	8.9999
(.(	chr1:23407899-23408166(+)$1	1	97	100	8.9999
..(	chr11:118923301-118923511(-)$1	1	39	42	8.9999
(((	chr7:6076955-6077216(-)$1	1	15	18	8.9999
.((	chr11:18418351-18418598(+)$1	1	60	63	8.9999
(((	chr3:197483269-197483528(+)$1	1	7	10	8.9999
(((	chr19:10254467-10254763(-)$1	1	6	9	8.9999
(..	chr10:79800272-79800474(+)$1	1	17	20	8.9999
)))	chr1:93812078-93812363(+)$1	1	48	51	8.9999
(((	chr9:125639669-125639928(-)$1	1	8	11	8.9999
((.	chr8:124195174-124195438(+)$1	1	2	5	8.9999
(.(	chr2:47389392-47389631(-)$1	1	7	10	8.9999
(..	chr1:78206461-78206723(-)$1	1	125	128	8.9999
...	chr1:26612269-26612572(-)$1	1	0	3	8.9999
(.(	chr6:44219681-44219904(+)$1	1	13	16	8.9999
..)	chr14:23495325-23495613(-)$1	1	48	51	8.9999
)))	chr7:99693609-99693847(-)$1	1	111	114	8.9999
(((	chr1:226109536-226109846(-)$1	1	71	74	8.9999
(((	chr11:102221109-102221375(+)$1	1	17	20	8.9999
(..	chr5:43292476-43292745(-)$1	1	43	46	8.9999
)..	chr19:49993631-49993833(+)$1	1	25	28	8.9999
.((	chr5:175957048-175957297(-)$1	1	16	19	8.9999
..(	chr12:49399140-49399410(-)$1	1	60	63	8.9999
.((	chr7:135099892-135100111(-)$1	1	13	16	8.9999
(.(	chr5:1802348-1802581(+)$1	1	17	20	8.9999
(..	chr17:66525019-66525233(+)$1	1	25	28	8.9999
...	chr9:19345818-19346085(+)$1	1	0	3	8.9999
(((	chrX:53244982-53245261(-)$1	1	116	119	8.9999
..(	chr5:10402453-10402664(+)$1	1	26	29	8.9999
)..	chr1:245027287-245027504(-)$1	1	143	146	8.9999
.))	chr10:71136661-71136866(+)$1	1	31	34	8.9999
...	chr3:167746908-167747177(-)$1	1	20	23	8.9999
.))	chr4:74017080-74017348(-)$1	1	168	171	8.9999
(..	chr2:113416377-113416607(+)$1	1	46	49	8.9999
)).	chr12:110437486-110437689(+)$1	1	104	107	8.9999
)).	chr8:56879174-56879443(+)$1	1	129	132	8.9999
.((	chr17:49238990-49239261(+)$1	1	75	78	8.9999
...	chr17:42266755-42267063(+)$1	1	0	3	8.9999
...	chr2:158157092-158157362(+)$1	1	43	46	8.9999
(..	chrX:39930787-39931047(-)$1	1	58	61	8.9999
(((	chr1:39907729-39908070(+)$1	1	18	21	8.9999
(.(	chr2:174946620-174946876(-)$1	1	15	18	8.9999
(((	chr10:33214864-33215136(-)$1	1	17	20	8.9999
(.(	chr17:73845653-73845868(-)$1	1	21	24	8.9999
..(	chr7:100853728-100854014(-)$1	1	0	3	8.9999
.(.	chr17:64731531-64731871(+)$1	1	61	64	8.9999
...	chr15:72499062-72499268(-)$1	1	0	3	8.9999
((.	chr10:13364822-13365054(-)$1	1	47	50	8.9999
)))	chr1:12012658-12012893(+)$1	1	214	217	8.9999
.((	chr9:140083422-140083681(+)$1	1	5	8	8.9999
...	chr1:160268879-160269092(-)$1	1	13	16	8.9999
)..	chr11:72465836-72466172(-)$1	1	228	231	8.9999
.((	chr9:2811465-2811674(-)$1	1	1	4	8.9999
...	chr2:25061369-25061592(-)$1	1	52	55	8.9999
(((	chr1:19488998-19489206(-)$1	1	8	11	8.9999
(..	chr1:15969961-15970246(+)$1	1	33	36	8.9999
(((	chr11:62396193-62396436(-)$1	1	97	100	8.9999
)))	chr6:70407354-70407597(-)$1	1	78	81	8.9999
...	chr7:105190609-105190872(+)$1	1	100	103	8.9999
)..	chr14:58701042-58701303(+)$1	1	127	130	8.9999
)))	chr1:93300241-93300446(+)$1	1	23	26	8.9999
...	chr11:62327172-62327384(-)$1	1	5	8	8.9999

#PSSM
U : 0.98	u : 0.01	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_transcript_m2_run2.nuc.txt

#NT
UUUGCCUG	chr14:21865397-21865602(-)$1	205	26	34	13.9999
ucuggcug	chr20:37390188-37390434(+)$1	246	47	55	20.8333
ucuggcug	chr20:33969442-33969696(-)$1	254	151	159	20.8333
ccuggcug	chr13:98856129-98856379(-)$1	250	26	34	16.6666
UUUGCCUG	chr14:21865412-21865660(-)$1	248	84	92	13.9999
UCUGGGUG	chr5:138614445-138614669(+)$1	224	206	214	16.5000
ucuggcug	chr11:74396228-74396475(+)$1	247	54	62	20.8333
UCUGGCUU	chr6:86386957-86387187(-)$1	230	161	169	16.1666
ucuggcug	chr2:76672263-76672488(-)$1	225	17	25	20.8333
ucuggcug	chr5:175055142-175055393(+)$1	251	113	121	20.8333
ucuggcug	chr6:132141395-132141678(+)$1	283	92	100	20.8333
ucuggcug	chr13:99857861-99858066(+)$1	205	114	122	20.8333
ucuggcug	chr8:129232660-129232902(+)$1	242	154	162	20.8333
UUUGCCUG	chr14:21865362-21865582(-)$1	220	6	14	13.9999
ucuggcug	chr6:76364860-76365115(-)$1	255	114	122	20.8333
UCUGACUG	chr3:52726660-52726926(+)$1	266	119	127	17.3333
CCUGGCUG	chr19:12814310-12814582(-)$1	272	198	206	16.6666
UCUGACUG	chr17:8076687-8076921(-)$1	234	218	226	17.3333
ucuggcug	chr5:6848462-6848673(-)$1	211	112	120	20.8333
UCUGGCAG	chrX:135961256-135961527(-)$1	271	58	66	16.1666
ucuggcug	chr20:18275954-18276195(-)$1	241	165	173	20.8333
Acuggcug	chr2:7281470-7281712(-)$1	242	55	63	16.5000
UAUGGCUG	chr15:66793504-66793724(-)$1	220	135	143	17.0000
UUUGACUG	chr2:29136429-29136643(+)$1	214	27	35	13.9999
UCUGGGUG	chr1:28905167-28905372(-)$1	205	124	132	16.5000
ucuggcug	chr14:90088175-90088380(+)$1	205	100	108	20.8333
ucuggcug	chr3:56106078-56106333(+)$1	255	67	75	20.8333
ucuggcug	chr7:3038689-3038937(+)$1	248	52	60	20.8333
UGUGGCUG	chr17:74557115-74557349(+)$1	234	36	44	17.0000

#otherMatches

#Struct PSSM
eeeddddG	chr16:70571833-70572104(+)$1	271	250	258	20.8333
EKKCCCBB	chr14:21865397-21865602(-)$1	205	26	34	13.9999
3eeeee44	chr20:37390188-37390434(+)$1	246	47	55	20.8333
ee55555d	chr20:33969442-33969696(-)$1	254	151	159	20.8333
ffffffDD	chr13:98856129-98856379(-)$1	250	26	34	16.6666
EKKCCCBB	chr14:21865412-21865660(-)$1	248	84	92	13.9999
ccchhhhh	chr5:138614445-138614669(+)$1	224	206	214	16.5000
bbpppppp	chr11:74396228-74396475(+)$1	247	54	62	20.8333
========	chr6:86386957-86387187(-)$1	230	161	169	16.1666
FFFFFF{B	chr2:76672263-76672488(-)$1	225	17	25	20.8333
nnnfffff	chr5:175055142-175055393(+)$1	251	113	121	20.8333
ddccc!!d	chr6:132141395-132141678(+)$1	283	92	100	20.8333
eee22ddd	chr13:99857861-99858066(+)$1	205	114	122	20.8333
DDDD}EEE	chr8:129232660-129232902(+)$1	242	154	162	20.8333
EKKCCCBB	chr14:21865362-21865582(-)$1	220	6	14	13.9999
!!ccc[cc	chr6:76364860-76365115(-)$1	255	114	122	20.8333
e!!ccc[d	chr3:52726660-52726926(+)$1	266	119	127	17.3333
:::fffff	chr19:12814310-12814582(-)$1	272	198	206	16.6666
d]bb22bb	chr17:8076687-8076921(-)$1	234	218	226	17.3333
###bb!!a	chr5:6848462-6848673(-)$1	211	112	120	20.8333
ggggggpp	chrX:135961256-135961527(-)$1	271	58	66	16.1666
nnnfffff	chr20:18275954-18276195(-)$1	241	165	173	20.8333
iiiiiiii	chr2:7281470-7281712(-)$1	242	55	63	16.5000
ggggggg!	chr15:66793504-66793724(-)$1	220	135	143	17.0000
xxxxxxxe	chr2:29136429-29136643(+)$1	214	27	35	13.9999
eee!!iii	chr1:28905167-28905372(-)$1	205	124	132	16.5000
EEEE{BBB	chr14:90088175-90088380(+)$1	205	100	108	20.8333
%%%bb$$$	chr3:56106078-56106333(+)$1	255	67	75	20.8333
:::eeeee	chr7:3038689-3038937(+)$1	248	52	60	20.8333
hhhhhhpp	chr17:74557115-74557349(+)$1	234	36	44	17.0000

#DB
))))))))	chr16:70571833-70572104(+)$1	1	250	258	20.8333
(..(((((	chr14:21865397-21865602(-)$1	1	26	34	13.9999
.)))))..	chr20:37390188-37390434(+)$1	1	47	55	20.8333
)).....)	chr20:33969442-33969696(-)$1	1	151	159	20.8333
))))))((	chr13:98856129-98856379(-)$1	1	26	34	16.6666
(..(((((	chr14:21865412-21865660(-)$1	1	84	92	13.9999
))))))))	chr5:138614445-138614669(+)$1	1	206	214	16.5000
((......	chr11:74396228-74396475(+)$1	1	54	62	20.8333
))))))))	chr6:86386957-86387187(-)$1	1	161	169	16.1666
((((((.(	chr2:76672263-76672488(-)$1	1	17	25	20.8333
...)))))	chr5:175055142-175055393(+)$1	1	113	121	20.8333
(((((..(	chr6:132141395-132141678(+)$1	1	92	100	20.8333
)))..)))	chr13:99857861-99858066(+)$1	1	114	122	20.8333
)))).)))	chr8:129232660-129232902(+)$1	1	154	162	20.8333
(..(((((	chr14:21865362-21865582(-)$1	1	6	14	13.9999
..(((.((	chr6:76364860-76365115(-)$1	1	114	122	20.8333
(..(((.(	chr3:52726660-52726926(+)$1	1	119	127	17.3333
...(((((	chr19:12814310-12814582(-)$1	1	198	206	16.6666
).))..))	chr17:8076687-8076921(-)$1	1	218	226	17.3333
...((..(	chr5:6848462-6848673(-)$1	1	112	120	20.8333
((((((..	chrX:135961256-135961527(-)$1	1	58	66	16.1666
...)))))	chr20:18275954-18276195(-)$1	1	165	173	20.8333
))))))))	chr2:7281470-7281712(-)$1	1	55	63	16.5000
(((((((.	chr15:66793504-66793724(-)$1	1	135	143	17.0000
.......)	chr2:29136429-29136643(+)$1	1	27	35	13.9999
(((..(((	chr1:28905167-28905372(-)$1	1	124	132	16.5000
((((.(((	chr14:90088175-90088380(+)$1	1	100	108	20.8333
...((...	chr3:56106078-56106333(+)$1	1	67	75	20.8333
...(((((	chr7:3038689-3038937(+)$1	1	52	60	20.8333
((((((..	chr17:74557115-74557349(+)$1	1	36	44	17.0000

#PSSM
u : 0.46	U : 0.43	c : 0.03	C : 0.03	A : 0.03	
c : 0.53	C : 0.26	U : 0.13	A : 0.03	G : 0.03	
u : 0.53	U : 0.46	
g : 0.53	G : 0.46	
g : 0.53	G : 0.26	C : 0.10	A : 0.10	
c : 0.53	C : 0.39	G : 0.06	
u : 0.53	U : 0.43	A : 0.03	
g : 0.53	G : 0.43	U : 0.03	

#score	552.3333333333334
#seq	30
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_UTR_m1_run1.nuc.txt

#NT
UGUUGGAUUUUU	chr20:3127083-3127427(-)$1	344	268	280	16.8695
Uuuuuuguuuuu	chr13:107196096-107196340(-)$1	244	66	78	24.0434
UUUUGUAUUUUU	chr6:57033292-57033580(+)$1	288	126	138	22.5217
uuuuuuuuuuuu	chr16:2508180-2508416(+)$1	236	74	86	24.2608
UUUUGUAUAUUU	chr1:25568657-25568914(-)$1	257	138	150	18.6086
UGUUAUAUUUUA	chr12:76444236-76444452(-)$1	216	98	110	16.3260
UUUCUGAUUUUU	chr4:68338103-68338419(-)$1	316	262	274	18.4999
UACUUUUUUUUU	chr7:26229945-26230175(-)$1	230	73	85	17.1956
UUUUUUUUGUUU	chr15:44821066-44821322(+)$1	256	237	249	20.4565
UGUUUUCUUUUG	chr14:102551225-102551436(-)$1	211	86	98	18.4999
UUUUUUUUUUUU	chr4:177253220-177253482(+)$1	262	249	261	24.2608
UUUUUGGUUUUU	chr12:76449835-76450042(-)$1	207	21	33	20.3478
UUCAUUAUUUUU	chr14:39651274-39651530(+)$1	256	174	186	17.5217
UUUAUUAAUUUU	chr11:34120348-34120586(+)$1	238	77	89	17.5217
UUUCUCAUUUUU	chr4:1950351-1950634(+)$1	283	240	252	18.7173
UAUCUUAUUUUU	chr3:156865512-156865807(-)$1	295	72	84	19.6956
UGUUAUAUUUAU	chr10:70545790-70546039(+)$1	249	83	95	16.2173
uuuuguauuuau	chr3:171318568-171318896(-)$1	328	96	108	18.4999
UUUUUUCUUUUU	chr12:8929189-8929499(+)$1	310	80	92	24.1521
uauuuuauuuuc	chr2:149449782-149450065(+)$1	283	164	176	19.6956
UAUUGUAUGUUU	chr5:32601159-32601430(+)$1	271	122	134	16.2173
AGUUUUAUUUUU	chr2:153528916-153529238(-)$1	322	23	35	19.9130
UGUUUUUUUUUU	chr20:60711717-60711987(-)$1	270	201	213	22.3043
UUUUUUGuauuu	chr7:138991982-138992318(+)$1	336	229	241	20.1304
UAUUUUGUUUUU	chr4:83345791-83346116(-)$1	325	60	72	21.5434
GUUUUUAUUUUC	chr12:56307467-56307830(-)$1	363	28	40	17.9565
UGUUUUCUUUUU	chr13:111545234-111545488(-)$1	254	167	179	22.1956
uuuuuuuuuuuu	chr4:54325439-54325740(+)$1	301	5	17	24.2608
UUUGUUGUUUUU	chr3:112256890-112257128(-)$1	238	80	92	20.0217
UGUUUUCUUUUG	chr14:102551117-102551354(-)$1	237	4	16	18.4999
UGUUUCAUUUGU	chr7:155574006-155574265(+)$1	259	75	87	16.3260
uuuuuuuuuuuu	chr2:47387784-47388043(-)$1	259	30	42	24.2608
UUUGUCAUUUUU	chr5:131953661-131953994(+)$1	333	77	89	18.6086
AUUUUUCUUUUU	chr4:56461329-56461605(-)$1	276	9	21	19.9130
UAUUUCAUUUUU	chr6:136582090-136582346(-)$1	256	5	17	20.1304
uuuuuucuuuua	chr8:101930952-101931210(-)$1	258	151	163	20.2391
UUUUUUAUGUAU	chrX:154005765-154006018(+)$1	253	87	99	18.2826
UUUUUUAAUUUG	chr1:59247128-59247426(-)$1	298	209	221	17.8478
GUUUCUAUUUUU	chr20:30194073-30194385(+)$1	312	66	78	17.8478
UUUUUUAUUUUU	chr6:155154459-155154761(+)$1	302	271	283	26.1086
UGUUUAAUGUUU	chr12:69667921-69668192(+)$1	271	70	82	16.4347
UGUUUUCUUUUG	chr14:102551186-102551425(-)$1	239	75	87	18.4999
CUUUUUGuuuuu	chr13:107195912-107196153(-)$1	241	183	195	19.6956
uuuuuuuuuuuu	chr6:31797671-31797957(+)$1	286	252	264	24.2608
UUUUUUAUUUAU	chr12:104341310-104341541(+)$1	231	82	94	22.0869

#otherMatches

#Struct PSSM
yyyydddd::::	chr16:10576051-10576334(+)$1	283	84	96	18.7173
nnnnffffff22	chr20:3127083-3127427(-)$1	344	268	280	16.8695
>>>>>>>>>>>>	chr13:107196096-107196340(-)$1	244	66	78	24.0434
hhhhhhhh[ggg	chr6:57033292-57033580(+)$1	288	126	138	22.5217
iiii::::::::	chr16:2508180-2508416(+)$1	236	74	86	24.2608
hhhffffff>>>	chr1:25568657-25568914(-)$1	257	138	150	18.6086
!eeeee[eeeee	chr12:76444236-76444452(-)$1	216	98	110	16.3260
:::ddddmmmmd	chr4:68338103-68338419(-)$1	316	262	274	18.4999
::::::::::::	chr7:26229945-26230175(-)$1	230	73	85	17.1956
IIIIIIIIIIII	chr15:44821066-44821322(+)$1	256	237	249	20.4565
c[hhhhhhhhpp	chr14:102551225-102551436(-)$1	211	86	98	18.4999
::::::::::::	chr4:177253220-177253482(+)$1	262	249	261	24.2608
$$$$$cccoooo	chr12:76449835-76450042(-)$1	207	21	33	20.3478
333dddd55555	chr14:39651274-39651530(+)$1	256	174	186	17.5217
D{DDDD:::::e	chr11:34120348-34120586(+)$1	238	77	89	17.5217
i333ccc22ddd	chr4:1950351-1950634(+)$1	283	240	252	18.7173
eeeeecccmmmm	chr3:156865512-156865807(-)$1	295	72	84	19.6956
bccc####gggg	chr10:70545790-70546039(+)$1	249	83	95	16.2173
gggggg22dddd	chr3:171318568-171318896(-)$1	328	96	108	18.4999
2a22ccc333dd	chr12:8929189-8929499(+)$1	310	80	92	24.1521
:::::ffffff[	chr2:149449782-149450065(+)$1	283	164	176	19.6956
tttta]iiiiii	chr5:32601159-32601430(+)$1	271	122	134	16.2173
GEEEEE{JJJJJ	chr2:153528916-153529238(-)$1	322	23	35	19.9130
b]==========	chr20:60711717-60711987(-)$1	270	201	213	22.3043
iiii%%%%%%dd	chr7:138991982-138992318(+)$1	336	229	241	20.1304
EE::::::::::	chr4:83345791-83346116(-)$1	325	60	72	21.5434
::::::::::::	chr12:56307467-56307830(-)$1	363	28	40	17.9565
ccc]========	chr13:111545234-111545488(-)$1	254	167	179	22.1956
hhhhhh[hhhhh	chr4:54325439-54325740(+)$1	301	5	17	24.2608
iiiiiiiioooo	chr3:112256890-112257128(-)$1	238	80	92	20.0217
==========="	chr14:102551117-102551354(-)$1	237	4	16	18.4999
[dddd[ccc###	chr7:155574006-155574265(+)$1	259	75	87	16.3260
^^^^^^^^^^^^	chr2:47387784-47388043(-)$1	259	30	42	24.2608
"eeeee####==	chr5:131953661-131953994(+)$1	333	77	89	18.6086
:::::BB{BB{H	chr4:56461329-56461605(-)$1	276	9	21	19.9130
mmmdddd:::::	chr6:136582090-136582346(-)$1	256	5	17	20.1304
oodddd]=====	chr8:101930952-101931210(-)$1	258	151	163	20.2391
++++++++++++	chrX:154005765-154006018(+)$1	253	87	99	18.2826
h::::ffffff[	chr1:59247128-59247426(-)$1	298	209	221	17.8478
c"""========	chr20:30194073-30194385(+)$1	312	66	78	17.8478
>>>>>>>>>>>>	chr6:155154459-155154761(+)$1	302	271	283	26.1086
]bb22dddd:::	chr12:69667921-69668192(+)$1	271	70	82	16.4347
c[hhhhhhhhpp	chr14:102551186-102551425(-)$1	239	75	87	18.4999
======[=====	chr13:107195912-107196153(-)$1	241	183	195	19.6956
::::::::::::	chr6:31797671-31797957(+)$1	286	252	264	24.2608
::::::::::::	chr12:104341310-104341541(+)$1	231	82	94	22.0869

#DB
....))))....	chr16:10576051-10576334(+)$1	1	84	96	18.7173
....))))))..	chr20:3127083-3127427(-)$1	1	268	280	16.8695
............	chr13:107196096-107196340(-)$1	1	66	78	24.0434
((((((((.(((	chr6:57033292-57033580(+)$1	1	126	138	22.5217
))))........	chr16:2508180-2508416(+)$1	1	74	86	24.2608
)))))))))...	chr1:25568657-25568914(-)$1	1	138	150	18.6086
.(((((.(((((	chr12:76444236-76444452(-)$1	1	98	110	16.3260
...((((....)	chr4:68338103-68338419(-)$1	1	262	274	18.4999
............	chr7:26229945-26230175(-)$1	1	73	85	17.1956
))))))))))))	chr15:44821066-44821322(+)$1	1	237	249	20.4565
(.((((((((..	chr14:102551225-102551436(-)$1	1	86	98	18.4999
............	chr4:177253220-177253482(+)$1	1	249	261	24.2608
.....(((....	chr12:76449835-76450042(-)$1	1	21	33	20.3478
...)))).....	chr14:39651274-39651530(+)$1	1	174	186	17.5217
(.((((.....(	chr11:34120348-34120586(+)$1	1	77	89	17.5217
)...)))..)))	chr4:1950351-1950634(+)$1	1	240	252	18.7173
((((((((....	chr3:156865512-156865807(-)$1	1	72	84	19.6956
((((....((((	chr10:70545790-70546039(+)$1	1	83	95	16.2173
))))))..))))	chr3:171318568-171318896(-)$1	1	96	108	18.4999
.)..)))...))	chr12:8929189-8929499(+)$1	1	80	92	24.1521
.....((((((.	chr2:149449782-149450065(+)$1	1	164	176	19.6956
....).))))))	chr5:32601159-32601430(+)$1	1	122	134	16.2173
((((((.(((((	chr2:153528916-153529238(-)$1	1	23	35	19.9130
).))))))))))	chr20:60711717-60711987(-)$1	1	201	213	22.3043
((((......((	chr7:138991982-138992318(+)$1	1	229	241	20.1304
((..........	chr4:83345791-83346116(-)$1	1	60	72	21.5434
............	chr12:56307467-56307830(-)$1	1	28	40	17.9565
))).))))))))	chr13:111545234-111545488(-)$1	1	167	179	22.1956
((((((.(((((	chr4:54325439-54325740(+)$1	1	5	17	24.2608
((((((((....	chr3:112256890-112257128(-)$1	1	80	92	20.0217
(((((((((((.	chr14:102551117-102551354(-)$1	1	4	16	18.4999
.((((.(((...	chr7:155574006-155574265(+)$1	1	75	87	16.3260
............	chr2:47387784-47388043(-)$1	1	30	42	24.2608
.(((((....((	chr5:131953661-131953994(+)$1	1	77	89	18.6086
.....((.((.(	chr4:56461329-56461605(-)$1	1	9	21	19.9130
...)))).....	chr6:136582090-136582346(-)$1	1	5	17	20.1304
..)))).)))))	chr8:101930952-101931210(-)$1	1	151	163	20.2391
............	chrX:154005765-154006018(+)$1	1	87	99	18.2826
)....((((((.	chr1:59247128-59247426(-)$1	1	209	221	17.8478
(...((((((((	chr20:30194073-30194385(+)$1	1	66	78	17.8478
............	chr6:155154459-155154761(+)$1	1	271	283	26.1086
.))..))))...	chr12:69667921-69668192(+)$1	1	70	82	16.4347
(.((((((((..	chr14:102551186-102551425(-)$1	1	75	87	18.4999
((((((.(((((	chr13:107195912-107196153(-)$1	1	183	195	19.6956
............	chr6:31797671-31797957(+)$1	1	252	264	24.2608
............	chr12:104341310-104341541(+)$1	1	82	94	22.0869

#PSSM
U : 0.73	u : 0.15	A : 0.04	G : 0.04	C : 0.02	
U : 0.47	G : 0.23	u : 0.15	A : 0.10	a : 0.02	
U : 0.78	u : 0.17	C : 0.04	
U : 0.67	u : 0.17	C : 0.06	A : 0.04	G : 0.04	
U : 0.67	u : 0.15	G : 0.08	A : 0.04	g : 0.02	C : 0.02	
U : 0.63	u : 0.17	C : 0.10	G : 0.06	A : 0.02	
A : 0.49	C : 0.13	G : 0.10	u : 0.08	U : 0.08	a : 0.04	g : 0.02	c : 0.02	
U : 0.73	u : 0.21	A : 0.04	
U : 0.65	u : 0.19	G : 0.08	A : 0.04	a : 0.02	
U : 0.78	u : 0.21	
U : 0.69	u : 0.19	A : 0.06	a : 0.02	G : 0.02	
U : 0.65	u : 0.17	G : 0.08	A : 0.02	c : 0.02	C : 0.02	a : 0.02	

#score	916.2173913043468
#seq	46
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_transcript_m1_run2.nuc.txt

#NT
GGG	chr19:11664218-11664512(-)$1	294	30	33	8.9999
GGG	chr19:1058825-1059041(+)$1	216	20	23	8.9999
GGG	chr1:150547240-150547490(-)$1	250	40	43	8.9999
GGG	chr11:1774110-1774358(-)$1	248	23	26	8.9999
GGG	chr22:19163542-19163794(-)$1	252	46	49	8.9999
GGG	chr17:79995400-79995662(-)$1	262	85	88	8.9999
GGG	chr16:3071985-3072269(+)$1	284	0	3	8.9999
GGG	chr19:13264986-13265259(+)$1	273	2	5	8.9999
GGG	chr12:120565389-120565637(-)$1	248	64	67	8.9999
GGG	chr9:140005110-140005334(-)$1	224	10	13	8.9999
GGG	chr16:2820926-2821145(+)$1	219	18	21	8.9999
GGG	chr16:67978224-67978465(-)$1	241	83	86	8.9999
GGG	chr20:55092075-55092331(+)$1	256	15	18	8.9999
GGG	chr6:43193985-43194231(-)$1	246	15	18	8.9999
GGG	chr7:6695637-6695883(+)$1	246	36	39	8.9999
GGG	chr19:51228419-51228688(+)$1	269	52	55	8.9999
GGG	chr7:98993802-98994030(-)$1	228	11	14	8.9999
GGG	chr9:131582976-131583221(+)$1	245	131	134	8.9999
GGG	chrX:153609583-153609816(+)$1	233	13	16	8.9999
GGG	chr19:541821-542062(+)$1	241	15	18	8.9999
ggg	chr19:11664169-11664418(-)$1	249	24	27	8.9999
GGG	chr1:45116719-45116990(+)$1	271	0	3	8.9999
GGG	chr11:64789185-64789462(+)$1	277	51	54	8.9999
GGG	chr19:5903518-5903862(-)$1	344	110	113	8.9999
ggg	chr6:34664393-34664664(-)$1	271	13	16	8.9999
GGG	chr15:69072229-69072500(-)$1	271	28	31	8.9999
GGG	chr8:145699227-145699473(+)$1	246	10	13	8.9999
GGG	chr19:50060032-50060282(-)$1	250	46	49	8.9999
GGG	chr6:32084188-32084445(-)$1	257	25	28	8.9999
GGG	chr22:39258315-39258626(-)$1	311	154	157	8.9999
GGG	chr16:31539720-31539976(+)$1	256	154	157	8.9999
GGG	chr19:896535-896780(-)$1	245	39	42	8.9999
GGG	chr22:20100139-20100381(-)$1	242	87	90	8.9999
GGG	chr16:4390275-4390507(-)$1	232	14	17	8.9999
GGG	chr16:30995300-30995559(+)$1	259	27	30	8.9999
GGG	chr20:36146180-36146428(-)$1	248	162	165	8.9999
GGG	chr17:73232695-73233026(-)$1	331	1	4	8.9999
GGG	chr1:45116444-45116726(+)$1	282	226	229	8.9999
GGG	chr11:66372899-66373151(+)$1	252	7	10	8.9999
GGG	chr1:22149045-22149324(-)$1	279	16	19	8.9999
GGG	chr17:4800805-4801054(+)$1	249	3	6	8.9999
GGG	chr11:62392827-62393076(-)$1	249	77	80	8.9999
GGG	chr19:18699523-18699810(+)$1	287	3	6	8.9999
GGG	chr17:45922652-45922877(-)$1	225	14	17	8.9999
GGG	chr1:154929931-154930159(-)$1	228	8	11	8.9999
GGG	chr22:19754360-19754617(+)$1	257	33	36	8.9999
GGG	chr3:129033809-129034027(-)$1	218	18	21	8.9999
GGG	chr9:139564835-139565071(+)$1	236	23	26	8.9999
GGG	chr11:295156-295408(+)$1	252	5	8	8.9999
GGG	chr14:105219485-105219753(+)$1	268	9	12	8.9999
GGG	chr19:7684538-7684793(-)$1	255	7	10	8.9999
GGG	chr19:54972226-54972442(+)$1	216	32	35	8.9999
GGG	chr1:24021052-24021274(+)$1	222	1	4	8.9999
GGG	chr19:38741820-38742048(-)$1	228	68	71	8.9999
GGG	chr19:12907735-12907955(-)$1	220	109	112	8.9999
GGG	chr1:153902029-153902308(-)$1	279	89	92	8.9999
GGG	chr3:13358850-13359088(-)$1	238	178	181	8.9999
GGG	chr6:31526032-31526341(+)$1	309	0	3	8.9999
GGG	chr19:2755618-2755842(-)$1	224	2	5	8.9999
GGG	chr1:154929836-154930109(-)$1	273	11	14	8.9999
GGG	chr11:61641159-61641418(-)$1	259	7	10	8.9999
GGG	chr19:45418035-45418293(+)$1	258	12	15	8.9999
GGG	chr6:2948694-2948938(-)$1	244	142	145	8.9999
GGG	chr19:2754682-2754941(-)$1	259	33	36	8.9999
GGG	chr1:46083630-46083898(+)$1	268	2	5	8.9999
GGG	chr6:160527152-160527404(+)$1	252	10	13	8.9999
GGG	chr1:22149124-22149375(-)$1	251	19	22	8.9999
GGG	chr1:39499989-39500269(+)$1	280	105	108	8.9999
GGG	chr9:140005231-140005489(-)$1	258	22	25	8.9999
GGG	chr1:26144324-26144585(+)$1	261	3	6	8.9999
GGG	chr9:140005018-140005310(-)$1	292	10	13	8.9999
ggg	chr17:16345024-16345241(+)$1	217	73	76	8.9999
GGG	chr16:88782750-88782974(-)$1	224	23	26	8.9999
GGG	chr17:26873845-26874128(-)$1	283	6	9	8.9999
GGG	chr16:2821243-2821478(+)$1	235	14	17	8.9999
GGG	chr2:220403054-220403302(+)$1	248	8	11	8.9999
GGG	chr7:100804169-100804418(+)$1	249	24	27	8.9999
GGG	chr3:13358785-13359050(-)$1	265	140	143	8.9999
GGG	chr1:160328276-160328562(+)$1	286	29	32	8.9999
GGG	chr22:38352679-38352955(+)$1	276	140	143	8.9999
GGG	chr3:48481577-48481804(+)$1	227	45	48	8.9999
GGG	chr1:228680736-228681023(+)$1	287	16	19	8.9999
GGG	chrX:153664289-153664579(+)$1	290	112	115	8.9999
GGG	chr19:1278835-1279091(+)$1	256	53	56	8.9999
GGG	chr1:22148970-22149224(-)$1	254	62	65	8.9999
GGG	chr11:67817857-67818127(+)$1	270	11	14	8.9999
GGG	chr14:102516332-102516556(+)$1	224	3	6	8.9999
GGG	chr5:175816489-175816750(+)$1	261	14	17	8.9999
GGG	chr11:64012152-64012395(-)$1	243	8	11	8.9999
GGG	chr2:219128807-219129091(-)$1	284	14	17	8.9999
GGG	chr16:30007476-30007749(+)$1	273	23	26	8.9999
GGG	chr1:156109127-156109451(+)$1	324	70	73	8.9999
GGG	chr19:18649058-18649268(-)$1	210	89	92	8.9999
GGG	chr17:7474849-7475166(+)$1	317	138	141	8.9999
GGG	chr19:54972205-54972426(+)$1	221	3	6	8.9999
GGG	chr19:11663893-11664167(-)$1	274	20	23	8.9999
GGG	chr19:38746838-38747105(-)$1	267	3	6	8.9999
GGG	chr17:38613705-38613980(+)$1	275	0	3	8.9999

#otherMatches

#Struct PSSM
JJJ	chr19:896496-896735(-)$1	239	147	150	8.9999
ggg	chr19:11664218-11664512(-)$1	294	30	33	8.9999
nnn	chr19:1058825-1059041(+)$1	216	20	23	8.9999
e:c	chr1:150547240-150547490(-)$1	250	40	43	8.9999
hhh	chr11:1774110-1774358(-)$1	248	23	26	8.9999
ddd	chr22:19163542-19163794(-)$1	252	46	49	8.9999
:dd	chr17:79995400-79995662(-)$1	262	85	88	8.9999
ccc	chr16:3071985-3072269(+)$1	284	0	3	8.9999
fff	chr19:13264986-13265259(+)$1	273	2	5	8.9999
dEE	chr12:120565389-120565637(-)$1	248	64	67	8.9999
{BB	chr9:140005110-140005334(-)$1	224	10	13	8.9999
fff	chr16:2820926-2821145(+)$1	219	18	21	8.9999
:::	chr16:67978224-67978465(-)$1	241	83	86	8.9999
eee	chr20:55092075-55092331(+)$1	256	15	18	8.9999
ddd	chr6:43193985-43194231(-)$1	246	15	18	8.9999
eee	chr7:6695637-6695883(+)$1	246	36	39	8.9999
III	chr19:51228419-51228688(+)$1	269	52	55	8.9999
EEE	chr7:98993802-98994030(-)$1	228	11	14	8.9999
ccc	chr9:131582976-131583221(+)$1	245	131	134	8.9999
eee	chrX:153609583-153609816(+)$1	233	13	16	8.9999
ggg	chr19:541821-542062(+)$1	241	15	18	8.9999
CCC	chr19:11664169-11664418(-)$1	249	24	27	8.9999
FFF	chr1:45116719-45116990(+)$1	271	0	3	8.9999
dff	chr11:64789185-64789462(+)$1	277	51	54	8.9999
bb[	chr19:5903518-5903862(-)$1	344	110	113	8.9999
[a[	chr6:34664393-34664664(-)$1	271	13	16	8.9999
g]a	chr15:69072229-69072500(-)$1	271	28	31	8.9999
EEE	chr8:145699227-145699473(+)$1	246	10	13	8.9999
eee	chr19:50060032-50060282(-)$1	250	46	49	8.9999
DDe	chr6:32084188-32084445(-)$1	257	25	28	8.9999
ddd	chr22:39258315-39258626(-)$1	311	154	157	8.9999
GGG	chr16:31539720-31539976(+)$1	256	154	157	8.9999
===	chr19:896535-896780(-)$1	245	39	42	8.9999
ee[	chr22:20100139-20100381(-)$1	242	87	90	8.9999
MCC	chr16:4390275-4390507(-)$1	232	14	17	8.9999
EEE	chr16:30995300-30995559(+)$1	259	27	30	8.9999
cc2	chr20:36146180-36146428(-)$1	248	162	165	8.9999
fff	chr17:73232695-73233026(-)$1	331	1	4	8.9999
ggg	chr1:45116444-45116726(+)$1	282	226	229	8.9999
FFF	chr11:66372899-66373151(+)$1	252	7	10	8.9999
FBB	chr1:22149045-22149324(-)$1	279	16	19	8.9999
===	chr17:4800805-4801054(+)$1	249	3	6	8.9999
ddd	chr11:62392827-62393076(-)$1	249	77	80	8.9999
ggg	chr19:18699523-18699810(+)$1	287	3	6	8.9999
#ee	chr17:45922652-45922877(-)$1	225	14	17	8.9999
EEE	chr1:154929931-154930159(-)$1	228	8	11	8.9999
ggg	chr22:19754360-19754617(+)$1	257	33	36	8.9999
HHH	chr3:129033809-129034027(-)$1	218	18	21	8.9999
DD{	chr9:139564835-139565071(+)$1	236	23	26	8.9999
fff	chr11:295156-295408(+)$1	252	5	8	8.9999
GGG	chr14:105219485-105219753(+)$1	268	9	12	8.9999
lee	chr19:7684538-7684793(-)$1	255	7	10	8.9999
eee	chr19:54972226-54972442(+)$1	216	32	35	8.9999
:::	chr1:24021052-24021274(+)$1	222	1	4	8.9999
ddd	chr19:38741820-38742048(-)$1	228	68	71	8.9999
EZZ	chr19:12907735-12907955(-)$1	220	109	112	8.9999
ddg	chr1:153902029-153902308(-)$1	279	89	92	8.9999
inn	chr3:13358850-13359088(-)$1	238	178	181	8.9999
::B	chr6:31526032-31526341(+)$1	309	0	3	8.9999
fff	chr19:2755618-2755842(-)$1	224	2	5	8.9999
ddd	chr1:154929836-154930109(-)$1	273	11	14	8.9999
fff	chr11:61641159-61641418(-)$1	259	7	10	8.9999
ppc	chr19:45418035-45418293(+)$1	258	12	15	8.9999
!!c	chr6:2948694-2948938(-)$1	244	142	145	8.9999
{BB	chr19:2754682-2754941(-)$1	259	33	36	8.9999
ggg	chr1:46083630-46083898(+)$1	268	2	5	8.9999
::G	chr6:160527152-160527404(+)$1	252	10	13	8.9999
ddd	chr1:22149124-22149375(-)$1	251	19	22	8.9999
bb2	chr1:39499989-39500269(+)$1	280	105	108	8.9999
:dd	chr9:140005231-140005489(-)$1	258	22	25	8.9999
GGG	chr1:26144324-26144585(+)$1	261	3	6	8.9999
!!c	chr9:140005018-140005310(-)$1	292	10	13	8.9999
ggg	chr17:16345024-16345241(+)$1	217	73	76	8.9999
FFF	chr16:88782750-88782974(-)$1	224	23	26	8.9999
:FF	chr17:26873845-26874128(-)$1	283	6	9	8.9999
ggg	chr16:2821243-2821478(+)$1	235	14	17	8.9999
DDf	chr2:220403054-220403302(+)$1	248	8	11	8.9999
ddd	chr7:100804169-100804418(+)$1	249	24	27	8.9999
inn	chr3:13358785-13359050(-)$1	265	140	143	8.9999
ddd	chr1:160328276-160328562(+)$1	286	29	32	8.9999
eee	chr22:38352679-38352955(+)$1	276	140	143	8.9999
eee	chr3:48481577-48481804(+)$1	227	45	48	8.9999
H{A	chr1:228680736-228681023(+)$1	287	16	19	8.9999
ggg	chrX:153664289-153664579(+)$1	290	112	115	8.9999
bb[	chr19:1278835-1279091(+)$1	256	53	56	8.9999
III	chr1:22148970-22149224(-)$1	254	62	65	8.9999
ccc	chr11:67817857-67818127(+)$1	270	11	14	8.9999
EEE	chr14:102516332-102516556(+)$1	224	3	6	8.9999
[cc	chr5:175816489-175816750(+)$1	261	14	17	8.9999
EHH	chr11:64012152-64012395(-)$1	243	8	11	8.9999
ggg	chr2:219128807-219129091(-)$1	284	14	17	8.9999
eee	chr16:30007476-30007749(+)$1	273	23	26	8.9999
eee	chr1:156109127-156109451(+)$1	324	70	73	8.9999
ddd	chr19:18649058-18649268(-)$1	210	89	92	8.9999
{DD	chr17:7474849-7475166(+)$1	317	138	141	8.9999
ggg	chr19:54972205-54972426(+)$1	221	3	6	8.9999
FFF	chr19:11663893-11664167(-)$1	274	20	23	8.9999
:::	chr19:38746838-38747105(-)$1	267	3	6	8.9999
:DD	chr17:38613705-38613980(+)$1	275	0	3	8.9999

#DB
)))	chr19:896496-896735(-)$1	1	147	150	8.9999
(((	chr19:11664218-11664512(-)$1	1	30	33	8.9999
...	chr19:1058825-1059041(+)$1	1	20	23	8.9999
).(	chr1:150547240-150547490(-)$1	1	40	43	8.9999
(((	chr11:1774110-1774358(-)$1	1	23	26	8.9999
(((	chr22:19163542-19163794(-)$1	1	46	49	8.9999
.((	chr17:79995400-79995662(-)$1	1	85	88	8.9999
(((	chr16:3071985-3072269(+)$1	1	0	3	8.9999
(((	chr19:13264986-13265259(+)$1	1	2	5	8.9999
)((	chr12:120565389-120565637(-)$1	1	64	67	8.9999
.((	chr9:140005110-140005334(-)$1	1	10	13	8.9999
)))	chr16:2820926-2821145(+)$1	1	18	21	8.9999
...	chr16:67978224-67978465(-)$1	1	83	86	8.9999
(((	chr20:55092075-55092331(+)$1	1	15	18	8.9999
)))	chr6:43193985-43194231(-)$1	1	15	18	8.9999
)))	chr7:6695637-6695883(+)$1	1	36	39	8.9999
(((	chr19:51228419-51228688(+)$1	1	52	55	8.9999
(((	chr7:98993802-98994030(-)$1	1	11	14	8.9999
)))	chr9:131582976-131583221(+)$1	1	131	134	8.9999
(((	chrX:153609583-153609816(+)$1	1	13	16	8.9999
(((	chr19:541821-542062(+)$1	1	15	18	8.9999
(((	chr19:11664169-11664418(-)$1	1	24	27	8.9999
(((	chr1:45116719-45116990(+)$1	1	0	3	8.9999
)))	chr11:64789185-64789462(+)$1	1	51	54	8.9999
((.	chr19:5903518-5903862(-)$1	1	110	113	8.9999
.(.	chr6:34664393-34664664(-)$1	1	13	16	8.9999
).)	chr15:69072229-69072500(-)$1	1	28	31	8.9999
(((	chr8:145699227-145699473(+)$1	1	10	13	8.9999
)))	chr19:50060032-50060282(-)$1	1	46	49	8.9999
(((	chr6:32084188-32084445(-)$1	1	25	28	8.9999
)))	chr22:39258315-39258626(-)$1	1	154	157	8.9999
)))	chr16:31539720-31539976(+)$1	1	154	157	8.9999
(((	chr19:896535-896780(-)$1	1	39	42	8.9999
((.	chr22:20100139-20100381(-)$1	1	87	90	8.9999
.((	chr16:4390275-4390507(-)$1	1	14	17	8.9999
(((	chr16:30995300-30995559(+)$1	1	27	30	8.9999
)).	chr20:36146180-36146428(-)$1	1	162	165	8.9999
(((	chr17:73232695-73233026(-)$1	1	1	4	8.9999
)))	chr1:45116444-45116726(+)$1	1	226	229	8.9999
(((	chr11:66372899-66373151(+)$1	1	7	10	8.9999
(((	chr1:22149045-22149324(-)$1	1	16	19	8.9999
(((	chr17:4800805-4801054(+)$1	1	3	6	8.9999
(((	chr11:62392827-62393076(-)$1	1	77	80	8.9999
(((	chr19:18699523-18699810(+)$1	1	3	6	8.9999
.((	chr17:45922652-45922877(-)$1	1	14	17	8.9999
(((	chr1:154929931-154930159(-)$1	1	8	11	8.9999
(((	chr22:19754360-19754617(+)$1	1	33	36	8.9999
(((	chr3:129033809-129034027(-)$1	1	18	21	8.9999
((.	chr9:139564835-139565071(+)$1	1	23	26	8.9999
(((	chr11:295156-295408(+)$1	1	5	8	8.9999
(((	chr14:105219485-105219753(+)$1	1	9	12	8.9999
.))	chr19:7684538-7684793(-)$1	1	7	10	8.9999
)))	chr19:54972226-54972442(+)$1	1	32	35	8.9999
...	chr1:24021052-24021274(+)$1	1	1	4	8.9999
(((	chr19:38741820-38742048(-)$1	1	68	71	8.9999
)..	chr19:12907735-12907955(-)$1	1	109	112	8.9999
))(	chr1:153902029-153902308(-)$1	1	89	92	8.9999
(..	chr3:13358850-13359088(-)$1	1	178	181	8.9999
..(	chr6:31526032-31526341(+)$1	1	0	3	8.9999
(((	chr19:2755618-2755842(-)$1	1	2	5	8.9999
(((	chr1:154929836-154930109(-)$1	1	11	14	8.9999
(((	chr11:61641159-61641418(-)$1	1	7	10	8.9999
..)	chr19:45418035-45418293(+)$1	1	12	15	8.9999
..(	chr6:2948694-2948938(-)$1	1	142	145	8.9999
.((	chr19:2754682-2754941(-)$1	1	33	36	8.9999
(((	chr1:46083630-46083898(+)$1	1	2	5	8.9999
..(	chr6:160527152-160527404(+)$1	1	10	13	8.9999
(((	chr1:22149124-22149375(-)$1	1	19	22	8.9999
)).	chr1:39499989-39500269(+)$1	1	105	108	8.9999
.((	chr9:140005231-140005489(-)$1	1	22	25	8.9999
(((	chr1:26144324-26144585(+)$1	1	3	6	8.9999
..(	chr9:140005018-140005310(-)$1	1	10	13	8.9999
)))	chr17:16345024-16345241(+)$1	1	73	76	8.9999
(((	chr16:88782750-88782974(-)$1	1	23	26	8.9999
.((	chr17:26873845-26874128(-)$1	1	6	9	8.9999
(((	chr16:2821243-2821478(+)$1	1	14	17	8.9999
(((	chr2:220403054-220403302(+)$1	1	8	11	8.9999
(((	chr7:100804169-100804418(+)$1	1	24	27	8.9999
(..	chr3:13358785-13359050(-)$1	1	140	143	8.9999
(((	chr1:160328276-160328562(+)$1	1	29	32	8.9999
)))	chr22:38352679-38352955(+)$1	1	140	143	8.9999
)))	chr3:48481577-48481804(+)$1	1	45	48	8.9999
(.(	chr1:228680736-228681023(+)$1	1	16	19	8.9999
)))	chrX:153664289-153664579(+)$1	1	112	115	8.9999
((.	chr19:1278835-1279091(+)$1	1	53	56	8.9999
(((	chr1:22148970-22149224(-)$1	1	62	65	8.9999
)))	chr11:67817857-67818127(+)$1	1	11	14	8.9999
(((	chr14:102516332-102516556(+)$1	1	3	6	8.9999
.((	chr5:175816489-175816750(+)$1	1	14	17	8.9999
(((	chr11:64012152-64012395(-)$1	1	8	11	8.9999
(((	chr2:219128807-219129091(-)$1	1	14	17	8.9999
)))	chr16:30007476-30007749(+)$1	1	23	26	8.9999
)))	chr1:156109127-156109451(+)$1	1	70	73	8.9999
)))	chr19:18649058-18649268(-)$1	1	89	92	8.9999
.((	chr17:7474849-7475166(+)$1	1	138	141	8.9999
(((	chr19:54972205-54972426(+)$1	1	3	6	8.9999
(((	chr19:11663893-11664167(-)$1	1	20	23	8.9999
...	chr19:38746838-38747105(-)$1	1	3	6	8.9999
.((	chr17:38613705-38613980(+)$1	1	0	3	8.9999

#PSSM
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_transcript_m3_run1.nuc.txt

#NT
CUGCCC	chr7:45141563-45141818(-)$1	255	77	83	15.1428
CUGCCC	chr17:34859691-34859976(-)$1	285	91	97	15.1428
GUGCCC	chr11:61058257-61058509(-)$1	252	186	192	14.3392
GUGCCC	chr17:3539245-3539497(-)$1	252	96	102	14.3392
CUGCCC	chr19:18266119-18266406(+)$1	287	124	130	15.1428
UUGCCC	chr14:23532584-23532886(-)$1	302	208	214	14.0714
UUGCCC	chr16:81685893-81686133(+)$1	240	184	190	14.0714
CUGCCC	chr2:63832298-63832550(+)$1	252	100	106	15.1428
AUGCCC	chr11:993953-994224(+)$1	271	136	142	13.4464
AUGCCC	chr3:160118437-160118727(+)$1	290	177	183	13.4464
GUGCCC	chr19:13216080-13216385(-)$1	305	72	78	14.3392
CUGCCC	chr16:68267203-68267457(-)$1	254	119	125	15.1428
UUGCCC	chr14:24621061-24621306(+)$1	245	93	99	14.0714
UUGCCC	chr2:29169444-29169697(+)$1	253	246	252	14.0714
CUGCCC	chr1:12638848-12639149(-)$1	301	155	161	15.1428
CUGCCC	chr9:116967281-116967487(+)$1	206	166	172	15.1428
GUGCCC	chr1:892173-892430(-)$1	257	186	192	14.3392
AUGCCC	chr19:50905769-50906014(+)$1	245	89	95	13.4464
CUGCCC	chr10:94452214-94452488(+)$1	274	183	189	15.1428
GUGCCC	chr19:47731574-47731824(-)$1	250	226	232	14.3392
GUGCCC	chr8:145223160-145223426(+)$1	266	103	109	14.3392
UUGCCC	chr13:99092811-99093083(+)$1	272	96	102	14.0714
GUGCCC	chr6:132272046-132272284(-)$1	238	187	193	14.3392
UUGCCC	chr16:30662835-30663054(+)$1	219	137	143	14.0714
GUGCCC	chr14:24033088-24033319(-)$1	231	110	116	14.3392
GUGCCC	chr17:79880941-79881238(-)$1	297	164	170	14.3392
CUGCCC	chr12:56490395-56490664(+)$1	269	118	124	15.1428
CUGCCC	chr12:133225822-133226078(-)$1	256	146	152	15.1428
GUGCCC	chr22:50943455-50943688(-)$1	233	18	24	14.3392
CUGCCC	chr3:15094008-15094252(-)$1	244	51	57	15.1428
GUGCCC	chr5:1483460-1483740(-)$1	280	11	17	14.3392
GUGCCC	chr16:68266471-68266738(-)$1	267	131	137	14.3392
CUGCCC	chr15:75949206-75949435(+)$1	229	23	29	15.1428
CUGCCC	chr19:19232099-19232374(-)$1	275	127	133	15.1428
CUGCCC	chr17:44110632-44110939(-)$1	307	56	62	15.1428
UUGCCC	chr13:113849311-113849547(-)$1	236	97	103	14.0714
AUGCCC	chr15:23300023-23300289(-)$1	266	46	52	13.4464
CUGCCC	chr15:75498202-75498489(+)$1	287	238	244	15.1428
UUGCCC	chr1:19467747-19467998(-)$1	251	128	134	14.0714
CUGCCC	chr8:145140328-145140612(+)$1	284	34	40	15.1428
UUGCCC	chr11:823524-823766(+)$1	242	201	207	14.0714
UUGCCC	chr4:1800886-1801098(+)$1	212	75	81	14.0714
GUGCCC	chr16:67578097-67578335(+)$1	238	154	160	14.3392
GUGCCC	chr6:31924630-31924889(-)$1	259	25	31	14.3392
AUGCCC	chr22:39917588-39917897(+)$1	309	252	258	13.4464
CUGCCC	chr1:19518642-19518899(-)$1	257	142	148	15.1428
CUGCCC	chr17:76120762-76121031(-)$1	269	77	83	15.1428
CUGCCC	chr11:800954-801196(-)$1	242	57	63	15.1428
CUGCCC	chr20:31596253-31596477(+)$1	224	169	175	15.1428
CUGCCC	chr16:8952870-8953121(-)$1	251	62	68	15.1428
CUGCCC	chr1:67895478-67895751(-)$1	273	11	17	15.1428
CUGCCC	chr17:2603991-2604224(-)$1	233	72	78	15.1428
GUGCCC	chr17:2246733-2247009(+)$1	276	3	9	14.3392
CUGCCC	chr16:67166323-67166568(+)$1	245	161	167	15.1428
UUGCCC	chr7:1521002-1521260(-)$1	258	92	98	14.0714

#otherMatches

#Struct PSSM
oooooo	chr1:19201161-19201499(-)$1	338	49	55	14.0714
##eeee	chr7:45141563-45141818(-)$1	255	77	83	15.1428
bb]ccc	chr17:34859691-34859976(-)$1	285	91	97	15.1428
JJJJJJ	chr11:61058257-61058509(-)$1	252	186	192	14.3392
ndddd]	chr17:3539245-3539497(-)$1	252	96	102	14.3392
buuuuu	chr19:18266119-18266406(+)$1	287	124	130	15.1428
llcccb	chr14:23532584-23532886(-)$1	302	208	214	14.0714
ddddhh	chr16:81685893-81686133(+)$1	240	184	190	14.0714
DDOOOO	chr2:63832298-63832550(+)$1	252	100	106	15.1428
NNDDDD	chr11:993953-994224(+)$1	271	136	142	13.4464
:ddddp	chr3:160118437-160118727(+)$1	290	177	183	13.4464
[eeeee	chr19:13216080-13216385(-)$1	305	72	78	14.3392
dd]agg	chr16:68267203-68267457(-)$1	254	119	125	15.1428
ddoooo	chr14:24621061-24621306(+)$1	245	93	99	14.0714
GGGGG:	chr2:29169444-29169697(+)$1	253	246	252	14.0714
:EEEEE	chr1:12638848-12639149(-)$1	301	155	161	15.1428
IIIIII	chr9:116967281-116967487(+)$1	206	166	172	15.1428
{EEEEE	chr1:892173-892430(-)$1	257	186	192	14.3392
h]dddd	chr19:50905769-50906014(+)$1	245	89	95	13.4464
:ddddm	chr10:94452214-94452488(+)$1	274	183	189	15.1428
cGGGGG	chr19:47731574-47731824(-)$1	250	226	232	14.3392
[bb[bb	chr8:145223160-145223426(+)$1	266	103	109	14.3392
fff:::	chr13:99092811-99093083(+)$1	272	96	102	14.0714
fffff[	chr6:132272046-132272284(-)$1	238	187	193	14.3392
&&&ggg	chr16:30662835-30663054(+)$1	219	137	143	14.0714
bb[ddd	chr14:24033088-24033319(-)$1	231	110	116	14.3392
======	chr17:79880941-79881238(-)$1	297	164	170	14.3392
cc]ddd	chr12:56490395-56490664(+)$1	269	118	124	15.1428
occc22	chr12:133225822-133226078(-)$1	256	146	152	15.1428
LLIIII	chr22:50943455-50943688(-)$1	233	18	24	14.3392
44eeee	chr3:15094008-15094252(-)$1	244	51	57	15.1428
DDDDdd	chr5:1483460-1483740(-)$1	280	11	17	14.3392
e]ffff	chr16:68266471-68266738(-)$1	267	131	137	14.3392
JJJJJ{	chr15:75949206-75949435(+)$1	229	23	29	15.1428
YA}III	chr19:19232099-19232374(-)$1	275	127	133	15.1428
"""ccc	chr17:44110632-44110939(-)$1	307	56	62	15.1428
:ccc""	chr13:113849311-113849547(-)$1	236	97	103	14.0714
oooooo	chr15:23300023-23300289(-)$1	266	46	52	13.4464
ddd###	chr15:75498202-75498489(+)$1	287	238	244	15.1428
g:EEEE	chr1:19467747-19467998(-)$1	251	128	134	14.0714
iiiiii	chr8:145140328-145140612(+)$1	284	34	40	15.1428
ddd:::	chr11:823524-823766(+)$1	242	201	207	14.0714
c]bbbb	chr4:1800886-1801098(+)$1	212	75	81	14.0714
d[bb[f	chr16:67578097-67578335(+)$1	238	154	160	14.3392
nnbbii	chr6:31924630-31924889(-)$1	259	25	31	14.3392
ffffff	chr22:39917588-39917897(+)$1	309	252	258	13.4464
cc[eee	chr1:19518642-19518899(-)$1	257	142	148	15.1428
""iiii	chr17:76120762-76121031(-)$1	269	77	83	15.1428
nnbbDD	chr11:800954-801196(-)$1	242	57	63	15.1428
dnnnnn	chr20:31596253-31596477(+)$1	224	169	175	15.1428
Gcccbb	chr16:8952870-8953121(-)$1	251	62	68	15.1428
{AKKFF	chr1:67895478-67895751(-)$1	273	11	17	15.1428
mmmmff	chr17:2603991-2604224(-)$1	233	72	78	15.1428
:hhhhh	chr17:2246733-2247009(+)$1	276	3	9	14.3392
cceeee	chr16:67166323-67166568(+)$1	245	161	167	15.1428
eeeee:	chr7:1521002-1521260(-)$1	258	92	98	14.0714

#DB
......	chr1:19201161-19201499(-)$1	1	49	55	14.0714
..((((	chr7:45141563-45141818(-)$1	1	77	83	15.1428
)).)))	chr17:34859691-34859976(-)$1	1	91	97	15.1428
))))))	chr11:61058257-61058509(-)$1	1	186	192	14.3392
.)))).	chr17:3539245-3539497(-)$1	1	96	102	14.3392
(.....	chr19:18266119-18266406(+)$1	1	124	130	15.1428
..))))	chr14:23532584-23532886(-)$1	1	208	214	14.0714
))))))	chr16:81685893-81686133(+)$1	1	184	190	14.0714
((....	chr2:63832298-63832550(+)$1	1	100	106	15.1428
..((((	chr11:993953-994224(+)$1	1	136	142	13.4464
.((((.	chr3:160118437-160118727(+)$1	1	177	183	13.4464
.(((((	chr19:13216080-13216385(-)$1	1	72	78	14.3392
)).)))	chr16:68267203-68267457(-)$1	1	119	125	15.1428
((....	chr14:24621061-24621306(+)$1	1	93	99	14.0714
))))).	chr2:29169444-29169697(+)$1	1	246	252	14.0714
.)))))	chr1:12638848-12639149(-)$1	1	155	161	15.1428
))))))	chr9:116967281-116967487(+)$1	1	166	172	15.1428
.(((((	chr1:892173-892430(-)$1	1	186	192	14.3392
).))))	chr19:50905769-50906014(+)$1	1	89	95	13.4464
.((((.	chr10:94452214-94452488(+)$1	1	183	189	15.1428
))))))	chr19:47731574-47731824(-)$1	1	226	232	14.3392
.((.((	chr8:145223160-145223426(+)$1	1	103	109	14.3392
)))...	chr13:99092811-99093083(+)$1	1	96	102	14.0714
(((((.	chr6:132272046-132272284(-)$1	1	187	193	14.3392
...(((	chr16:30662835-30663054(+)$1	1	137	143	14.0714
((.(((	chr14:24033088-24033319(-)$1	1	110	116	14.3392
((((((	chr17:79880941-79881238(-)$1	1	164	170	14.3392
)).)))	chr12:56490395-56490664(+)$1	1	118	124	15.1428
.)))..	chr12:133225822-133226078(-)$1	1	146	152	15.1428
..((((	chr22:50943455-50943688(-)$1	1	18	24	14.3392
..))))	chr3:15094008-15094252(-)$1	1	51	57	15.1428
((((((	chr5:1483460-1483740(-)$1	1	11	17	14.3392
).))))	chr16:68266471-68266738(-)$1	1	131	137	14.3392
(((((.	chr15:75949206-75949435(+)$1	1	23	29	15.1428
.).)))	chr19:19232099-19232374(-)$1	1	127	133	15.1428
...(((	chr17:44110632-44110939(-)$1	1	56	62	15.1428
.(((..	chr13:113849311-113849547(-)$1	1	97	103	14.0714
......	chr15:23300023-23300289(-)$1	1	46	52	13.4464
(((...	chr15:75498202-75498489(+)$1	1	238	244	15.1428
).))))	chr1:19467747-19467998(-)$1	1	128	134	14.0714
((((((	chr8:145140328-145140612(+)$1	1	34	40	15.1428
)))...	chr11:823524-823766(+)$1	1	201	207	14.0714
).))))	chr4:1800886-1801098(+)$1	1	75	81	14.0714
(.((.(	chr16:67578097-67578335(+)$1	1	154	160	14.3392
..))))	chr6:31924630-31924889(-)$1	1	25	31	14.3392
((((((	chr22:39917588-39917897(+)$1	1	252	258	13.4464
((.(((	chr1:19518642-19518899(-)$1	1	142	148	15.1428
..((((	chr17:76120762-76121031(-)$1	1	77	83	15.1428
..))))	chr11:800954-801196(-)$1	1	57	63	15.1428
(.....	chr20:31596253-31596477(+)$1	1	169	175	15.1428
((((((	chr16:8952870-8953121(-)$1	1	62	68	15.1428
.(..((	chr1:67895478-67895751(-)$1	1	11	17	15.1428
....))	chr17:2603991-2604224(-)$1	1	72	78	15.1428
.(((((	chr17:2246733-2247009(+)$1	1	3	9	14.3392
((((((	chr16:67166323-67166568(+)$1	1	161	167	15.1428
))))).	chr7:1521002-1521260(-)$1	1	92	98	14.0714

#PSSM
C : 0.42	G : 0.26	U : 0.21	A : 0.08	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	

#score	814.6071428571432
#seq	56
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_UTR_m2_run1.nuc.txt

#NT
GAGCUGGG	chr1:225615213-225615446(-)$1	233	45	53	16.6562
UGGCUGGG	chr1:20237075-20237351(+)$1	276	149	157	15.8750
gggcuggg	chr3:33481508-33481782(-)$1	274	165	173	20.0937
GGGCCGGG	chr15:79165418-79165666(+)$1	248	57	65	16.4218
GGGCUGGG	chr2:11917324-11917624(+)$1	300	169	177	20.0937
gggccggg	chr8:145634482-145634756(-)$1	274	143	151	16.4218
gggcuggg	chr2:11484151-11484474(-)$1	323	8	16	20.0937
GGGCUGGG	chr1:32573850-32574098(+)$1	248	200	208	20.0937
GAGCUGGG	chr12:111892536-111892855(-)$1	319	169	177	16.6562
GGGCGGGG	chr5:130599657-130599971(+)$1	314	70	78	16.4218
GAGCUGGG	chr12:121137116-121137391(+)$1	275	150	158	16.6562
GGGCUGGG	chr16:777314-777622(+)$1	308	144	152	20.0937
GGGCUGGC	chr19:49605793-49606076(+)$1	283	129	137	15.4062
AGGCUGGG	chr6:170151701-170152074(+)$1	373	112	120	15.9531
GGGGUGGG	chr2:85766841-85767102(+)$1	261	164	172	16.1875
gggcaggg	chr11:3013202-3013435(-)$1	233	80	88	16.1875
gagcuggg	chr4:1386755-1387001(+)$1	246	111	119	16.6562
GCGCUGGG	chr3:49130584-49131044(-)$1	460	182	190	16.3437
GCGCUGGG	chr1:22109373-22109627(-)$1	254	212	220	16.3437
gggcuggg	chr22:20068065-20068288(+)$1	223	27	35	20.0937
gggcgggg	chr8:145743321-145743580(+)$1	259	43	51	16.4218
GGCCUGGG	chr22:39130845-39131156(-)$1	311	149	157	15.5625
GGGCUGGG	chr4:120987801-120988069(-)$1	268	27	35	20.0937
CGGCUGGG	chr6:163835871-163836187(+)$1	316	131	139	15.9531
GGGCGGGG	chr19:18547932-18548224(-)$1	292	43	51	16.4218
GGGCUGGG	chr21:30672262-30672558(+)$1	296	156	164	20.0937
Uggcuggg	chr15:91505731-91505995(+)$1	264	107	115	15.8750
AGGCUGGG	chrX:109420060-109420339(+)$1	279	132	140	15.9531
CGGCUGGG	chr5:137089641-137089900(-)$1	259	45	53	15.9531
GGGGUGGG	chr15:28519468-28519705(-)$1	237	45	53	16.1875
GGGGUGGG	chr1:6259307-6259556(-)$1	249	43	51	16.1875
GGGCUGGG	chr21:30672387-30672629(+)$1	242	31	39	20.0937
GUGCUGGG	chr12:133351035-133351291(-)$1	256	235	243	16.3437
GGGCAGGG	chrX:109419816-109420097(+)$1	281	107	115	16.1875
GAGCUGGG	chr11:10829439-10829685(-)$1	246	57	65	16.6562
GCGCUGGG	chr16:2059503-2059750(-)$1	247	120	128	16.3437
GGGGUGGG	chr16:2301257-2301524(-)$1	267	20	28	16.1875
GGCCUGGG	chr19:8550507-8550791(+)$1	284	68	76	15.5625
GGUCUGGG	chr19:575128-575410(+)$1	282	126	134	15.5625
gggcgggg	chr6:170123880-170124234(-)$1	354	85	93	16.4218
GGGCUGGG	chr2:61405884-61406191(+)$1	307	147	155	20.0937
GGGCUGCG	chr10:129924316-129924597(-)$1	281	88	96	15.3281
GGGCCGGG	chr8:102217243-102217522(-)$1	279	149	157	16.4218
GGGCUGUG	chr9:4839393-4839658(+)$1	265	251	259	15.3281
GAGCUGGG	chr1:225615310-225615566(-)$1	256	165	173	16.6562
GGGGUGGG	chr16:1360062-1360335(+)$1	273	138	146	16.1875
GUGCUGGG	chr20:62563402-62563669(+)$1	267	103	111	16.3437
GGGCCGGG	chr19:34919232-34919495(+)$1	263	155	163	16.4218
gggcuggg	chr19:56614706-56615009(-)$1	303	143	151	20.0937
AGGCUGGG	chr21:46686920-46687207(-)$1	287	159	167	15.9531
GGGCUGGG	chr6:167369868-167370124(-)$1	256	79	87	20.0937
GUGCUGGG	chr22:22899641-22899876(-)$1	235	209	217	16.3437
GGGCCGGG	chr9:19379856-19380173(-)$1	317	184	192	16.4218
GGGCUGGG	chr17:79879034-79879302(-)$1	268	129	137	20.0937
GGGCUGGU	chr17:48796911-48797138(+)$1	227	148	156	15.4843
GGGCUGGG	chr22:21212832-21213156(-)$1	324	310	318	20.0937
GGGGUGGG	chr1:6259356-6259640(-)$1	284	127	135	16.1875
GGGCGGGG	chr1:11072611-11072865(+)$1	254	70	78	16.4218
GGGGUGGG	chr2:131808257-131808521(-)$1	264	21	29	16.1875
GGGCUGGU	chr4:152020860-152021119(+)$1	259	59	67	15.4843
GGGCUAGG	chr22:46748660-46748999(+)$1	339	320	328	15.2500
GGUCUGGG	chr9:137024749-137025031(+)$1	282	76	84	15.5625
cggcuggg	chr21:45432186-45432494(+)$1	308	117	125	15.9531

#otherMatches

#Struct PSSM
22ddddbb	chr6:170101739-170102135(-)$1	396	104	112	16.6562
B{JJJJJJ	chr1:225615213-225615446(-)$1	233	45	53	16.6562
dd]ccc]g	chr1:20237075-20237351(+)$1	276	149	157	15.8750
f[eeeee[	chr3:33481508-33481782(-)$1	274	165	173	20.0937
a[ddddmm	chr15:79165418-79165666(+)$1	248	57	65	16.4218
dddbbddd	chr2:11917324-11917624(+)$1	300	169	177	20.0937
fffccc[b	chr8:145634482-145634756(-)$1	274	143	151	16.4218
[ddddooo	chr2:11484151-11484474(-)$1	323	8	16	20.0937
dddd]a]g	chr1:32573850-32574098(+)$1	248	200	208	20.0937
CCCKKHHH	chr12:111892536-111892855(-)$1	319	169	177	16.6562
b]eeeee2	chr5:130599657-130599971(+)$1	314	70	78	16.4218
========	chr12:121137116-121137391(+)$1	275	150	158	16.6562
:dddd"""	chr16:777314-777622(+)$1	308	144	152	20.0937
hhhh::dd	chr19:49605793-49606076(+)$1	283	129	137	15.4062
dddd[a[c	chr6:170151701-170152074(+)$1	373	112	120	15.9531
HHHHHHHH	chr2:85766841-85767102(+)$1	261	164	172	16.1875
ffffcccc	chr11:3013202-3013435(-)$1	233	80	88	16.1875
2ffffffC	chr4:1386755-1387001(+)$1	246	111	119	16.6562
bb::::A{	chr3:49130584-49131044(-)$1	460	182	190	16.3437
EEEEE}CC	chr1:22109373-22109627(-)$1	254	212	220	16.3437
eeeee[dd	chr22:20068065-20068288(+)$1	223	27	35	20.0937
oooooobb	chr8:145743321-145743580(+)$1	259	43	51	16.4218
dddd]fff	chr22:39130845-39131156(-)$1	311	149	157	15.5625
hhbbffff	chr4:120987801-120988069(-)$1	268	27	35	20.0937
b::eeeee	chr6:163835871-163836187(+)$1	316	131	139	15.9531
eeee333d	chr19:18547932-18548224(-)$1	292	43	51	16.4218
d[cccddd	chr21:30672262-30672558(+)$1	296	156	164	20.0937
::ffffff	chr15:91505731-91505995(+)$1	264	107	115	15.8750
ldddd333	chrX:109420060-109420339(+)$1	279	132	140	15.9531
mmeeeeec	chr5:137089641-137089900(-)$1	259	45	53	15.9531
bbrrrrrr	chr15:28519468-28519705(-)$1	237	45	53	16.1875
hhhhh[cc	chr1:6259307-6259556(-)$1	249	43	51	16.1875
d[cccddd	chr21:30672387-30672629(+)$1	242	31	39	20.0937
ee!!cccm	chr12:133351035-133351291(-)$1	256	235	243	16.3437
fffffooo	chrX:109419816-109420097(+)$1	281	107	115	16.1875
oooobb22	chr11:10829439-10829685(-)$1	246	57	65	16.6562
bb]eeeee	chr16:2059503-2059750(-)$1	247	120	128	16.3437
ccc[a[a!	chr16:2301257-2301524(-)$1	267	20	28	16.1875
hhhhha[b	chr19:8550507-8550791(+)$1	284	68	76	15.5625
eeeee22b	chr19:575128-575410(+)$1	282	126	134	15.5625
iiiiiiii	chr6:170123880-170124234(-)$1	354	85	93	16.4218
[ggggggg	chr2:61405884-61406191(+)$1	307	147	155	20.0937
d]ffffff	chr10:129924316-129924597(-)$1	281	88	96	15.3281
HHHHHPPP	chr8:102217243-102217522(-)$1	279	149	157	16.4218
CFFFFFF}	chr9:4839393-4839658(+)$1	265	251	259	15.3281
fffccc[b	chr1:225615310-225615566(-)$1	256	165	173	16.6562
mmmmbb]=	chr16:1360062-1360335(+)$1	273	138	146	16.1875
ccc22a]b	chr20:62563402-62563669(+)$1	267	103	111	16.3437
===]ffff	chr19:34919232-34919495(+)$1	263	155	163	16.4218
HHHHHHH:	chr19:56614706-56615009(-)$1	303	143	151	20.0937
ccc[ccc!	chr21:46686920-46687207(-)$1	287	159	167	15.9531
GGCCC{BB	chr6:167369868-167370124(-)$1	256	79	87	20.0937
c]ffffff	chr22:22899641-22899876(-)$1	235	209	217	16.3437
GGGGGddd	chr9:19379856-19380173(-)$1	317	184	192	16.4218
ddddeeee	chr17:79879034-79879302(-)$1	268	129	137	20.0937
c!!bbmmm	chr17:48796911-48797138(+)$1	227	148	156	15.4843
DDDDYYCC	chr22:21212832-21213156(-)$1	324	310	318	20.0937
hhhhh[cc	chr1:6259356-6259640(-)$1	284	127	135	16.1875
!eeeee[c	chr1:11072611-11072865(+)$1	254	70	78	16.4218
gggggggg	chr2:131808257-131808521(-)$1	264	21	29	16.1875
iiiii:ee	chr4:152020860-152021119(+)$1	259	59	67	15.4843
CCCCYYEE	chr22:46748660-46748999(+)$1	339	320	328	15.2500
777cccdd	chr9:137024749-137025031(+)$1	282	76	84	15.5625
FFFFF}DD	chr21:45432186-45432494(+)$1	308	117	125	15.9531

#DB
..))))))	chr6:170101739-170102135(-)$1	1	104	112	16.6562
(.((((((	chr1:225615213-225615446(-)$1	1	45	53	16.6562
)).))).)	chr1:20237075-20237351(+)$1	1	149	157	15.8750
(.(((((.	chr3:33481508-33481782(-)$1	1	165	173	20.0937
(.((((..	chr15:79165418-79165666(+)$1	1	57	65	16.4218
)))))(((	chr2:11917324-11917624(+)$1	1	169	177	20.0937
((((((.(	chr8:145634482-145634756(-)$1	1	143	151	16.4218
.((((...	chr2:11484151-11484474(-)$1	1	8	16	20.0937
)))).).)	chr1:32573850-32574098(+)$1	1	200	208	20.0937
(((..(((	chr12:111892536-111892855(-)$1	1	169	177	16.6562
).))))).	chr5:130599657-130599971(+)$1	1	70	78	16.4218
((((((((	chr12:121137116-121137391(+)$1	1	150	158	16.6562
.((((...	chr16:777314-777622(+)$1	1	144	152	20.0937
))))..((	chr19:49605793-49606076(+)$1	1	129	137	15.4062
((((.(.(	chr6:170151701-170152074(+)$1	1	112	120	15.9531
))))))))	chr2:85766841-85767102(+)$1	1	164	172	16.1875
))))))))	chr11:3013202-3013435(-)$1	1	80	88	16.1875
.)))))))	chr4:1386755-1387001(+)$1	1	111	119	16.6562
))....(.	chr3:49130584-49131044(-)$1	1	182	190	16.3437
))))).))	chr1:22109373-22109627(-)$1	1	212	220	16.3437
(((((.((	chr22:20068065-20068288(+)$1	1	27	35	20.0937
......))	chr8:145743321-145743580(+)$1	1	43	51	16.4218
)))).)))	chr22:39130845-39131156(-)$1	1	149	157	15.5625
((((((((	chr4:120987801-120988069(-)$1	1	27	35	20.0937
)..(((((	chr6:163835871-163836187(+)$1	1	131	139	15.9531
))))...)	chr19:18547932-18548224(-)$1	1	43	51	16.4218
(.((((((	chr21:30672262-30672558(+)$1	1	156	164	20.0937
..((((((	chr15:91505731-91505995(+)$1	1	107	115	15.8750
.))))...	chrX:109420060-109420339(+)$1	1	132	140	15.9531
..))))))	chr5:137089641-137089900(-)$1	1	45	53	15.9531
((......	chr15:28519468-28519705(-)$1	1	45	53	16.1875
(((((.((	chr1:6259307-6259556(-)$1	1	43	51	16.1875
(.((((((	chr21:30672387-30672629(+)$1	1	31	39	20.0937
((..(((.	chr12:133351035-133351291(-)$1	1	235	243	16.3437
(((((...	chrX:109419816-109420097(+)$1	1	107	115	16.1875
....))..	chr11:10829439-10829685(-)$1	1	57	65	16.6562
)).)))))	chr16:2059503-2059750(-)$1	1	120	128	16.3437
(((.(.(.	chr16:2301257-2301524(-)$1	1	20	28	16.1875
((((((.(	chr19:8550507-8550791(+)$1	1	68	76	15.5625
)))))..)	chr19:575128-575410(+)$1	1	126	134	15.5625
((((((((	chr6:170123880-170124234(-)$1	1	85	93	16.4218
.(((((((	chr2:61405884-61406191(+)$1	1	147	155	20.0937
).))))))	chr10:129924316-129924597(-)$1	1	88	96	15.3281
(((((...	chr8:102217243-102217522(-)$1	1	149	157	16.4218
))))))).	chr9:4839393-4839658(+)$1	1	251	259	15.3281
((((((.(	chr1:225615310-225615566(-)$1	1	165	173	16.6562
....)).)	chr16:1360062-1360335(+)$1	1	138	146	16.1875
)))..).)	chr20:62563402-62563669(+)$1	1	103	111	16.3437
))).))))	chr19:34919232-34919495(+)$1	1	155	163	16.4218
(((((((.	chr19:56614706-56615009(-)$1	1	143	151	20.0937
(((.(((.	chr21:46686920-46687207(-)$1	1	159	167	15.9531
(((((.((	chr6:167369868-167370124(-)$1	1	79	87	20.0937
).))))))	chr22:22899641-22899876(-)$1	1	209	217	16.3437
((((((((	chr9:19379856-19380173(-)$1	1	184	192	16.4218
))))))))	chr17:79879034-79879302(-)$1	1	129	137	20.0937
(..((...	chr17:48796911-48797138(+)$1	1	148	156	15.4843
))))..))	chr22:21212832-21213156(-)$1	1	310	318	20.0937
(((((.((	chr1:6259356-6259640(-)$1	1	127	135	16.1875
.(((((.(	chr1:11072611-11072865(+)$1	1	70	78	16.4218
((((((((	chr2:131808257-131808521(-)$1	1	21	29	16.1875
))))).((	chr4:152020860-152021119(+)$1	1	59	67	15.4843
))))..))	chr22:46748660-46748999(+)$1	1	320	328	15.2500
...)))))	chr9:137024749-137025031(+)$1	1	76	84	15.5625
))))).))	chr21:45432186-45432494(+)$1	1	117	125	15.9531

#PSSM
G : 0.73	g : 0.14	A : 0.04	U : 0.03	C : 0.03	c : 0.01	
G : 0.64	g : 0.15	A : 0.09	C : 0.04	U : 0.04	a : 0.01	
G : 0.76	g : 0.17	C : 0.03	U : 0.03	
C : 0.71	c : 0.17	G : 0.10	
U : 0.70	u : 0.10	C : 0.06	G : 0.04	g : 0.03	c : 0.01	a : 0.01	A : 0.01	
G : 0.81	g : 0.17	A : 0.01	
G : 0.79	g : 0.17	C : 0.01	U : 0.01	
G : 0.78	g : 0.17	U : 0.03	C : 0.01	

#score	1087.875
#seq	64
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_UTR_m2_run1.nuc.txt

#NT
GCAGG	chr3:49051492-49051776(+)$1	284	74	79	14.9999
GCAGG	chr20:34243159-34243402(-)$1	243	132	137	14.9999
GCAGG	chr22:32012575-32012832(+)$1	257	65	70	14.9999
GCAGG	chr7:100229712-100229961(-)$1	249	238	243	14.9999
GCAGG	chr8:48625901-48626204(+)$1	303	145	150	14.9999
GCAGG	chr16:8941450-8941690(+)$1	240	203	208	14.9999
GCAGG	chr17:80014772-80015031(+)$1	259	98	103	14.9999
GCAGG	chr20:60709068-60709334(+)$1	266	57	62	14.9999
GCAGG	chr13:111287646-111287914(+)$1	268	1	6	14.9999
GCAGG	chr15:34651831-34652120(-)$1	289	116	121	14.9999
GCAGG	chr18:690527-690879(-)$1	352	57	62	14.9999
GCAGG	chr3:38163768-38164037(-)$1	269	190	195	14.9999
GCAGG	chr10:51589083-51589343(+)$1	260	77	82	14.9999
GCAGG	chr20:25667075-25667322(-)$1	247	59	64	14.9999
GCAGG	chr9:116298921-116299165(+)$1	244	189	194	14.9999
GCAGG	chr11:611475-611775(+)$1	300	63	68	14.9999
GCAGG	chr3:38178065-38178316(-)$1	251	136	141	14.9999
GCAGG	chr8:145742453-145742751(-)$1	298	173	178	14.9999
GCAGG	chr5:135382379-135382663(+)$1	284	230	235	14.9999
GCAGG	chr11:799873-800164(-)$1	291	63	68	14.9999
GCAGG	chr13:113535974-113536293(+)$1	319	52	57	14.9999
GCAGG	chr19:15807087-15807348(+)$1	261	34	39	14.9999
GCAGG	chr20:32247768-32248006(-)$1	238	59	64	14.9999
GCAGG	chr17:17717604-17717871(-)$1	267	32	37	14.9999
GCAGG	chr11:67074691-67074958(+)$1	267	146	151	14.9999
GCAGG	chr19:19105155-19105413(-)$1	258	157	162	14.9999
GCAGG	chr7:44610370-44610647(-)$1	277	167	172	14.9999
GCAGG	chr11:802998-803242(-)$1	244	135	140	14.9999
GCAGG	chr11:118967648-118967918(-)$1	270	63	68	14.9999
GCAGG	chr9:139701292-139701574(-)$1	282	155	160	14.9999
GCAGG	chr17:56082846-56083115(-)$1	269	263	268	14.9999
GCAGG	chr20:62331781-62332023(-)$1	242	27	32	14.9999
GCAGG	chr20:60962779-60962992(+)$1	213	2	7	14.9999
GCAGG	chr19:1272265-1272526(+)$1	261	28	33	14.9999
GCAGG	chr17:46048577-46048826(+)$1	249	58	63	14.9999
GCAGG	chr2:234198338-234198607(+)$1	269	112	117	14.9999
GCAGG	chr17:76200747-76201030(+)$1	283	93	98	14.9999
GCAGG	chr20:34219844-34220090(-)$1	246	139	144	14.9999
GCAGG	chr1:3383589-3383826(+)$1	237	80	85	14.9999
GCAGG	chr1:19212013-19212266(-)$1	253	4	9	14.9999
GCAGG	chr19:45573131-45573433(+)$1	302	144	149	14.9999
GCAGG	chr12:123465988-123466239(+)$1	251	87	92	14.9999
GCAGG	chr2:220081160-220081430(-)$1	270	61	66	14.9999
GCAGG	chr2:675502-675790(-)$1	288	124	129	14.9999
gcagg	chr15:89877002-89877288(-)$1	286	159	164	14.9999
GCAGG	chr16:22328297-22328541(+)$1	244	76	81	14.9999
GCAGG	chr7:44609397-44609662(-)$1	265	45	50	14.9999
GCAGG	chr9:140348765-140349068(-)$1	303	116	121	14.9999
GCAGG	chr17:76817973-76818232(-)$1	259	161	166	14.9999
GCAGG	chr16:16251519-16251814(-)$1	295	258	263	14.9999
GCAGG	chr20:25666988-25667257(-)$1	269	47	52	14.9999
GCAGG	chr2:242609994-242610241(+)$1	247	14	19	14.9999
GCAGG	chr17:48445559-48445808(-)$1	249	145	150	14.9999
gcagg	chr7:99947209-99947537(+)$1	328	48	53	14.9999
GCAGG	chr22:42557247-42557502(-)$1	255	33	38	14.9999
GCAGG	chr14:24588608-24588883(+)$1	275	67	72	14.9999
GCAGG	chr19:54971751-54971987(+)$1	236	75	80	14.9999
GCAGG	chr16:88783518-88783768(-)$1	250	102	107	14.9999

#otherMatches

#Struct PSSM
cccbb	chr1:249151964-249152217(-)$1	253	155	160	14.9999
333dd	chr3:49051492-49051776(+)$1	284	74	79	14.9999
fffff	chr20:34243159-34243402(-)$1	243	132	137	14.9999
eelll	chr22:32012575-32012832(+)$1	257	65	70	14.9999
fffff	chr7:100229712-100229961(-)$1	249	238	243	14.9999
fffff	chr8:48625901-48626204(+)$1	303	145	150	14.9999
dd:BB	chr16:8941450-8941690(+)$1	240	203	208	14.9999
ddddb	chr17:80014772-80015031(+)$1	259	98	103	14.9999
GGGGG	chr20:60709068-60709334(+)$1	266	57	62	14.9999
:dddd	chr13:111287646-111287914(+)$1	268	1	6	14.9999
HHHHH	chr15:34651831-34652120(-)$1	289	116	121	14.9999
offff	chr18:690527-690879(-)$1	352	57	62	14.9999
]cccd	chr3:38163768-38164037(-)$1	269	190	195	14.9999
hhhhh	chr10:51589083-51589343(+)$1	260	77	82	14.9999
::ggg	chr20:25667075-25667322(-)$1	247	59	64	14.9999
:DDDD	chr9:116298921-116299165(+)$1	244	189	194	14.9999
mmccc	chr11:611475-611775(+)$1	300	63	68	14.9999
ggggc	chr3:38178065-38178316(-)$1	251	136	141	14.9999
aa[ff	chr8:145742453-145742751(-)$1	298	173	178	14.9999
cDDDD	chr5:135382379-135382663(+)$1	284	230	235	14.9999
{CCCK	chr11:799873-800164(-)$1	291	63	68	14.9999
FFFFG	chr13:113535974-113536293(+)$1	319	52	57	14.9999
!!ccc	chr19:15807087-15807348(+)$1	261	34	39	14.9999
hhooo	chr20:32247768-32248006(-)$1	238	59	64	14.9999
b[hhh	chr17:17717604-17717871(-)$1	267	32	37	14.9999
DDDDe	chr11:67074691-67074958(+)$1	267	146	151	14.9999
dddhh	chr19:19105155-19105413(-)$1	258	157	162	14.9999
mdddd	chr7:44610370-44610647(-)$1	277	167	172	14.9999
iiiii	chr11:802998-803242(-)$1	244	135	140	14.9999
ggggg	chr11:118967648-118967918(-)$1	270	63	68	14.9999
mmmdd	chr9:139701292-139701574(-)$1	282	155	160	14.9999
CC}CC	chr17:56082846-56083115(-)$1	269	263	268	14.9999
bffff	chr20:62331781-62332023(-)$1	242	27	32	14.9999
C{DDD	chr20:60962779-60962992(+)$1	213	2	7	14.9999
BB{DD	chr19:1272265-1272526(+)$1	261	28	33	14.9999
44hhh	chr17:46048577-46048826(+)$1	249	58	63	14.9999
[eeee	chr2:234198338-234198607(+)$1	269	112	117	14.9999
d!!dd	chr17:76200747-76201030(+)$1	283	93	98	14.9999
ccc55	chr20:34219844-34220090(-)$1	246	139	144	14.9999
=====	chr1:3383589-3383826(+)$1	237	80	85	14.9999
BKKHH	chr1:19212013-19212266(-)$1	253	4	9	14.9999
ccc]b	chr19:45573131-45573433(+)$1	302	144	149	14.9999
ddCCC	chr12:123465988-123466239(+)$1	251	87	92	14.9999
BB{FF	chr2:220081160-220081430(-)$1	270	61	66	14.9999
ccbb!	chr2:675502-675790(-)$1	288	124	129	14.9999
HH:bb	chr15:89877002-89877288(-)$1	286	159	164	14.9999
==[bb	chr16:22328297-22328541(+)$1	244	76	81	14.9999
[a[cc	chr7:44609397-44609662(-)$1	265	45	50	14.9999
[hhhh	chr9:140348765-140349068(-)$1	303	116	121	14.9999
HHHHH	chr17:76817973-76818232(-)$1	259	161	166	14.9999
IIIEE	chr16:16251519-16251814(-)$1	295	258	263	14.9999
bbddd	chr20:25666988-25667257(-)$1	269	47	52	14.9999
ddddf	chr2:242609994-242610241(+)$1	247	14	19	14.9999
DDDDA	chr17:48445559-48445808(-)$1	249	145	150	14.9999
ggggb	chr7:99947209-99947537(+)$1	328	48	53	14.9999
mbb]e	chr22:42557247-42557502(-)$1	255	33	38	14.9999
fffff	chr14:24588608-24588883(+)$1	275	67	72	14.9999
c[ccc	chr19:54971751-54971987(+)$1	236	75	80	14.9999
eeedd	chr16:88783518-88783768(-)$1	250	102	107	14.9999

#DB
(((((	chr1:249151964-249152217(-)$1	1	155	160	14.9999
...))	chr3:49051492-49051776(+)$1	1	74	79	14.9999
)))))	chr20:34243159-34243402(-)$1	1	132	137	14.9999
((...	chr22:32012575-32012832(+)$1	1	65	70	14.9999
)))))	chr7:100229712-100229961(-)$1	1	238	243	14.9999
(((((	chr8:48625901-48626204(+)$1	1	145	150	14.9999
)).))	chr16:8941450-8941690(+)$1	1	203	208	14.9999
)))))	chr17:80014772-80015031(+)$1	1	98	103	14.9999
(((((	chr20:60709068-60709334(+)$1	1	57	62	14.9999
.((((	chr13:111287646-111287914(+)$1	1	1	6	14.9999
(((((	chr15:34651831-34652120(-)$1	1	116	121	14.9999
.))))	chr18:690527-690879(-)$1	1	57	62	14.9999
.)))(	chr3:38163768-38164037(-)$1	1	190	195	14.9999
(((((	chr10:51589083-51589343(+)$1	1	77	82	14.9999
..(((	chr20:25667075-25667322(-)$1	1	59	64	14.9999
.))))	chr9:116298921-116299165(+)$1	1	189	194	14.9999
..)))	chr11:611475-611775(+)$1	1	63	68	14.9999
)))))	chr3:38178065-38178316(-)$1	1	136	141	14.9999
((.((	chr8:145742453-145742751(-)$1	1	173	178	14.9999
)))))	chr5:135382379-135382663(+)$1	1	230	235	14.9999
.(((.	chr11:799873-800164(-)$1	1	63	68	14.9999
(((((	chr13:113535974-113536293(+)$1	1	52	57	14.9999
..(((	chr19:15807087-15807348(+)$1	1	34	39	14.9999
((...	chr20:32247768-32248006(-)$1	1	59	64	14.9999
(.(((	chr17:17717604-17717871(-)$1	1	32	37	14.9999
(((((	chr11:67074691-67074958(+)$1	1	146	151	14.9999
)))((	chr19:19105155-19105413(-)$1	1	157	162	14.9999
.))))	chr7:44610370-44610647(-)$1	1	167	172	14.9999
)))))	chr11:802998-803242(-)$1	1	135	140	14.9999
(((((	chr11:118967648-118967918(-)$1	1	63	68	14.9999
...))	chr9:139701292-139701574(-)$1	1	155	160	14.9999
)).))	chr17:56082846-56083115(-)$1	1	263	268	14.9999
(((((	chr20:62331781-62332023(-)$1	1	27	32	14.9999
(.(((	chr20:60962779-60962992(+)$1	1	2	7	14.9999
((.((	chr19:1272265-1272526(+)$1	1	28	33	14.9999
..)))	chr17:46048577-46048826(+)$1	1	58	63	14.9999
.((((	chr2:234198338-234198607(+)$1	1	112	117	14.9999
(..((	chr17:76200747-76201030(+)$1	1	93	98	14.9999
)))..	chr20:34219844-34220090(-)$1	1	139	144	14.9999
(((((	chr1:3383589-3383826(+)$1	1	80	85	14.9999
(..((	chr1:19212013-19212266(-)$1	1	4	9	14.9999
))).)	chr19:45573131-45573433(+)$1	1	144	149	14.9999
))(((	chr12:123465988-123466239(+)$1	1	87	92	14.9999
((.((	chr2:220081160-220081430(-)$1	1	61	66	14.9999
((((.	chr2:675502-675790(-)$1	1	124	129	14.9999
((.((	chr15:89877002-89877288(-)$1	1	159	164	14.9999
((.((	chr16:22328297-22328541(+)$1	1	76	81	14.9999
.(.((	chr7:44609397-44609662(-)$1	1	45	50	14.9999
.((((	chr9:140348765-140349068(-)$1	1	116	121	14.9999
)))))	chr17:76817973-76818232(-)$1	1	161	166	14.9999
)))))	chr16:16251519-16251814(-)$1	1	258	263	14.9999
)))))	chr20:25666988-25667257(-)$1	1	47	52	14.9999
(((((	chr2:242609994-242610241(+)$1	1	14	19	14.9999
)))))	chr17:48445559-48445808(-)$1	1	145	150	14.9999
(((((	chr7:99947209-99947537(+)$1	1	48	53	14.9999
.)).)	chr22:42557247-42557502(-)$1	1	33	38	14.9999
)))))	chr14:24588608-24588883(+)$1	1	67	72	14.9999
(.(((	chr19:54971751-54971987(+)$1	1	75	80	14.9999
)))((	chr16:88783518-88783768(-)$1	1	102	107	14.9999

#PSSM
G : 0.96	g : 0.03	
C : 0.96	c : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	884.9999999999995
#seq	59
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_transcript_m1_run1.nuc.txt

#NT
GAG	chr11:68100198-68100478(+)$1	280	1	4	8.9999
GAG	chr8:134305195-134305456(-)$1	261	40	43	8.9999
GAG	chr10:43903826-43904076(-)$1	250	7	10	8.9999
GAG	chr2:58418554-58418849(-)$1	295	109	112	8.9999
GAG	chr19:50168041-50168352(-)$1	311	0	3	8.9999
gag	chr1:246383446-246383705(-)$1	259	5	8	8.9999
GAG	chr21:38445774-38446052(+)$1	278	1	4	8.9999
GAG	chr21:46292245-46292498(-)$1	253	50	53	8.9999
GAG	chr19:4059862-4060140(-)$1	278	17	20	8.9999
GAG	chrX:73459859-73460200(-)$1	341	4	7	8.9999
gag	chr2:235915976-235916244(+)$1	268	27	30	8.9999
GAG	chr11:65194253-65194463(+)$1	210	30	33	8.9999
GAG	chr17:75303494-75303742(+)$1	248	28	31	8.9999
GAG	chr2:178128151-178128399(-)$1	248	147	150	8.9999
GAG	chr8:134278249-134278460(-)$1	211	6	9	8.9999
GAG	chr20:60626490-60626758(-)$1	268	3	6	8.9999
GAG	chr11:65195222-65195450(+)$1	228	206	209	8.9999
GAG	chr6:2217069-2217375(-)$1	306	26	29	8.9999
gag	chr19:576752-576989(+)$1	237	16	19	8.9999
GAG	chr3:48471150-48471414(-)$1	264	13	16	8.9999
GAG	chr8:11667271-11667533(+)$1	262	43	46	8.9999
GAG	chr9:136855646-136855913(-)$1	267	33	36	8.9999
GAG	chr2:231903208-231903454(+)$1	246	2	5	8.9999
GAG	chr10:696824-697131(-)$1	307	3	6	8.9999
GAG	chr10:104407890-104408144(+)$1	254	53	56	8.9999
GAG	chr6:158986953-158987199(+)$1	246	34	37	8.9999
gag	chr2:236527696-236528014(+)$1	318	0	3	8.9999
GAG	chr2:240320338-240320618(-)$1	280	61	64	8.9999
GAG	chr8:144673536-144673782(-)$1	246	4	7	8.9999
GAG	chr16:46941981-46942271(+)$1	290	20	23	8.9999
GAG	chr8:13133582-13133845(-)$1	263	27	30	8.9999
GAG	chr10:102758631-102758912(+)$1	281	42	45	8.9999
gag	chr2:240202226-240202562(-)$1	336	3	6	8.9999
GAG	chr2:129041721-129042048(-)$1	327	37	40	8.9999
GAG	chr1:228276730-228277019(+)$1	289	3	6	8.9999
GAG	chr2:65657670-65657977(-)$1	307	47	50	8.9999
GAG	chr9:136718471-136718714(-)$1	243	83	86	8.9999
gag	chr16:81521997-81522238(+)$1	241	9	12	8.9999
GAG	chr16:23607160-23607493(-)$1	333	10	13	8.9999
GAG	chr16:68298552-68298881(+)$1	329	27	30	8.9999
GAG	chr10:105419562-105419804(-)$1	242	78	81	8.9999
GAG	chr17:75450071-75450338(+)$1	267	65	68	8.9999
GAG	chr2:11769627-11769918(+)$1	291	0	3	8.9999
GAG	chr3:195634220-195634483(-)$1	263	46	49	8.9999
GAG	chr11:63894366-63894657(-)$1	291	42	45	8.9999
GAG	chr11:65194455-65194669(+)$1	214	48	51	8.9999
GAG	chr20:61286775-61287126(+)$1	351	24	27	8.9999
GAG	chr11:43848494-43848823(+)$1	329	141	144	8.9999
GAG	chr20:61568699-61569033(-)$1	334	22	25	8.9999
gag	chr12:69637248-69637588(+)$1	340	231	234	8.9999
GAG	chr2:101437070-101437328(+)$1	258	24	27	8.9999
GAG	chr6:2218166-2218434(-)$1	268	38	41	8.9999
GAG	chr11:65203245-65203471(+)$1	226	11	14	8.9999
GAG	chr11:70934712-70934960(-)$1	248	8	11	8.9999
GAG	chr16:89484353-89484611(-)$1	258	28	31	8.9999
GAG	chr16:31198652-31198918(+)$1	266	31	34	8.9999
gag	chr7:158249204-158249519(-)$1	315	18	21	8.9999
GAG	chr8:144675066-144675279(-)$1	213	20	23	8.9999
GAG	chr17:79962199-79962463(+)$1	264	81	84	8.9999
GAG	chr7:2678271-2678543(+)$1	272	31	34	8.9999
GAG	chr9:136803838-136804126(-)$1	288	10	13	8.9999
GAG	chr16:8961186-8961458(-)$1	272	8	11	8.9999
GAG	chr3:12329490-12329764(+)$1	274	1	4	8.9999
GAG	chr13:113445484-113445773(+)$1	289	12	15	8.9999
GAG	chr3:66021650-66021915(-)$1	265	116	119	8.9999
GAG	chr11:65203227-65203445(+)$1	218	29	32	8.9999
GAG	chr11:129685768-129686028(+)$1	260	9	12	8.9999
GAG	chr13:98866143-98866420(+)$1	277	17	20	8.9999
GAG	chr2:241563196-241563454(+)$1	258	1	4	8.9999
GAG	chr16:81527934-81528234(+)$1	300	8	11	8.9999
GAG	chr7:139404557-139404833(-)$1	276	52	55	8.9999
GAG	chr16:50592373-50592606(+)$1	233	7	10	8.9999
GAG	chr16:8962509-8962759(-)$1	250	65	68	8.9999
GAG	chr16:87890177-87890432(-)$1	255	16	19	8.9999
GAG	chr12:8025158-8025442(-)$1	284	37	40	8.9999
gag	chr2:188387620-188387875(+)$1	255	49	52	8.9999
GAG	chr17:55395737-55396012(+)$1	275	48	51	8.9999
GAG	chr6:2245086-2245340(-)$1	254	9	12	8.9999
gag	chr8:125672891-125673197(-)$1	306	24	27	8.9999
GAG	chr20:60722157-60722420(+)$1	263	4	7	8.9999
GAG	chr10:5727483-5727743(+)$1	260	60	63	8.9999
GAG	chr6:158452340-158452671(+)$1	331	44	47	8.9999
GAG	chr8:134308972-134309242(-)$1	270	24	27	8.9999
GAG	chr19:41771242-41771482(+)$1	240	22	25	8.9999
GAG	chr14:99986923-99987218(-)$1	295	1	4	8.9999
GAG	chr8:123795910-123796206(+)$1	296	64	67	8.9999
GAG	chr6:158986245-158986502(+)$1	257	11	14	8.9999
GAG	chr4:1236773-1237015(-)$1	242	14	17	8.9999
GAG	chr10:102758858-102759122(+)$1	264	35	38	8.9999
GAG	chr9:136848709-136848963(-)$1	254	18	21	8.9999
GAG	chr17:55479658-55479907(+)$1	249	22	25	8.9999
GAG	chr17:75415714-75415978(+)$1	264	80	83	8.9999
GAG	chr19:2270253-2270568(+)$1	315	58	61	8.9999
GAG	chr11:66391444-66391715(+)$1	271	20	23	8.9999
gag	chr8:142416043-142416334(+)$1	291	0	3	8.9999
GAG	chr14:24908336-24908590(+)$1	254	52	55	8.9999
gag	chr2:11725542-11725877(+)$1	335	75	78	8.9999
GAG	chr8:144679209-144679499(-)$1	290	8	11	8.9999

#otherMatches

#Struct PSSM
ddd	chr17:70556726-70557000(-)$1	274	47	50	8.9999
ddd	chr11:68100198-68100478(+)$1	280	1	4	8.9999
{A{	chr8:134305195-134305456(-)$1	261	40	43	8.9999
""c	chr10:43903826-43904076(-)$1	250	7	10	8.9999
nnd	chr2:58418554-58418849(-)$1	295	109	112	8.9999
:::	chr19:50168041-50168352(-)$1	311	0	3	8.9999
[bb	chr1:246383446-246383705(-)$1	259	5	8	8.9999
:DD	chr21:38445774-38446052(+)$1	278	1	4	8.9999
ddd	chr21:46292245-46292498(-)$1	253	50	53	8.9999
ppp	chr19:4059862-4060140(-)$1	278	17	20	8.9999
GGG	chrX:73459859-73460200(-)$1	341	4	7	8.9999
OOO	chr2:235915976-235916244(+)$1	268	27	30	8.9999
gmm	chr11:65194253-65194463(+)$1	210	30	33	8.9999
ddd	chr17:75303494-75303742(+)$1	248	28	31	8.9999
fff	chr2:178128151-178128399(-)$1	248	147	150	8.9999
HHH	chr8:134278249-134278460(-)$1	211	6	9	8.9999
NNN	chr20:60626490-60626758(-)$1	268	3	6	8.9999
e]b	chr11:65195222-65195450(+)$1	228	206	209	8.9999
[bb	chr6:2217069-2217375(-)$1	306	26	29	8.9999
:DD	chr19:576752-576989(+)$1	237	16	19	8.9999
OOO	chr3:48471150-48471414(-)$1	264	13	16	8.9999
fff	chr8:11667271-11667533(+)$1	262	43	46	8.9999
BB{	chr9:136855646-136855913(-)$1	267	33	36	8.9999
{CC	chr2:231903208-231903454(+)$1	246	2	5	8.9999
DLL	chr10:696824-697131(-)$1	307	3	6	8.9999
[dd	chr10:104407890-104408144(+)$1	254	53	56	8.9999
HHH	chr6:158986953-158987199(+)$1	246	34	37	8.9999
::c	chr2:236527696-236528014(+)$1	318	0	3	8.9999
f:D	chr2:240320338-240320618(-)$1	280	61	64	8.9999
KKF	chr8:144673536-144673782(-)$1	246	4	7	8.9999
MHH	chr16:46941981-46942271(+)$1	290	20	23	8.9999
e##	chr8:13133582-13133845(-)$1	263	27	30	8.9999
foo	chr10:102758631-102758912(+)$1	281	42	45	8.9999
DDD	chr2:240202226-240202562(-)$1	336	3	6	8.9999
d:I	chr2:129041721-129042048(-)$1	327	37	40	8.9999
mmm	chr1:228276730-228277019(+)$1	289	3	6	8.9999
eee	chr2:65657670-65657977(-)$1	307	47	50	8.9999
ooo	chr9:136718471-136718714(-)$1	243	83	86	8.9999
III	chr16:81521997-81522238(+)$1	241	9	12	8.9999
{EE	chr16:23607160-23607493(-)$1	333	10	13	8.9999
]ff	chr16:68298552-68298881(+)$1	329	27	30	8.9999
ccc	chr10:105419562-105419804(-)$1	242	78	81	8.9999
e]i	chr17:75450071-75450338(+)$1	267	65	68	8.9999
DDD	chr2:11769627-11769918(+)$1	291	0	3	8.9999
ddd	chr3:195634220-195634483(-)$1	263	46	49	8.9999
cii	chr11:63894366-63894657(-)$1	291	42	45	8.9999
ccc	chr11:65194455-65194669(+)$1	214	48	51	8.9999
ccc	chr20:61286775-61287126(+)$1	351	24	27	8.9999
GGG	chr11:43848494-43848823(+)$1	329	141	144	8.9999
e:d	chr20:61568699-61569033(-)$1	334	22	25	8.9999
GGG	chr12:69637248-69637588(+)$1	340	231	234	8.9999
bbq	chr2:101437070-101437328(+)$1	258	24	27	8.9999
www	chr6:2218166-2218434(-)$1	268	38	41	8.9999
b]d	chr11:65203245-65203471(+)$1	226	11	14	8.9999
ddd	chr11:70934712-70934960(-)$1	248	8	11	8.9999
emm	chr16:89484353-89484611(-)$1	258	28	31	8.9999
ccc	chr16:31198652-31198918(+)$1	266	31	34	8.9999
:::	chr7:158249204-158249519(-)$1	315	18	21	8.9999
===	chr8:144675066-144675279(-)$1	213	20	23	8.9999
[ee	chr17:79962199-79962463(+)$1	264	81	84	8.9999
]a:	chr7:2678271-2678543(+)$1	272	31	34	8.9999
E{E	chr9:136803838-136804126(-)$1	288	10	13	8.9999
FF{	chr16:8961186-8961458(-)$1	272	8	11	8.9999
::C	chr3:12329490-12329764(+)$1	274	1	4	8.9999
KCC	chr13:113445484-113445773(+)$1	289	12	15	8.9999
:::	chr3:66021650-66021915(-)$1	265	116	119	8.9999
b]d	chr11:65203227-65203445(+)$1	218	29	32	8.9999
d[d	chr11:129685768-129686028(+)$1	260	9	12	8.9999
fCC	chr13:98866143-98866420(+)$1	277	17	20	8.9999
DDD	chr2:241563196-241563454(+)$1	258	1	4	8.9999
EEE	chr16:81527934-81528234(+)$1	300	8	11	8.9999
a22	chr7:139404557-139404833(-)$1	276	52	55	8.9999
BMM	chr16:50592373-50592606(+)$1	233	7	10	8.9999
===	chr16:8962509-8962759(-)$1	250	65	68	8.9999
[gg	chr16:87890177-87890432(-)$1	255	16	19	8.9999
JJI	chr12:8025158-8025442(-)$1	284	37	40	8.9999
!!g	chr2:188387620-188387875(+)$1	255	49	52	8.9999
NDD	chr17:55395737-55396012(+)$1	275	48	51	8.9999
JJB	chr6:2245086-2245340(-)$1	254	9	12	8.9999
ggg	chr8:125672891-125673197(-)$1	306	24	27	8.9999
e&&	chr20:60722157-60722420(+)$1	263	4	7	8.9999
tbb	chr10:5727483-5727743(+)$1	260	60	63	8.9999
f::	chr6:158452340-158452671(+)$1	331	44	47	8.9999
:bb	chr8:134308972-134309242(-)$1	270	24	27	8.9999
vvv	chr19:41771242-41771482(+)$1	240	22	25	8.9999
ddd	chr14:99986923-99987218(-)$1	295	1	4	8.9999
dd2	chr8:123795910-123796206(+)$1	296	64	67	8.9999
ccc	chr6:158986245-158986502(+)$1	257	11	14	8.9999
ff!	chr4:1236773-1237015(-)$1	242	14	17	8.9999
EEE	chr10:102758858-102759122(+)$1	264	35	38	8.9999
LLG	chr9:136848709-136848963(-)$1	254	18	21	8.9999
hh[	chr17:55479658-55479907(+)$1	249	22	25	8.9999
:a[	chr17:75415714-75415978(+)$1	264	80	83	8.9999
fff	chr19:2270253-2270568(+)$1	315	58	61	8.9999
E{A	chr11:66391444-66391715(+)$1	271	20	23	8.9999
HHH	chr8:142416043-142416334(+)$1	291	0	3	8.9999
cc]	chr14:24908336-24908590(+)$1	254	52	55	8.9999
###	chr2:11725542-11725877(+)$1	335	75	78	8.9999
%%%	chr8:144679209-144679499(-)$1	290	8	11	8.9999

#DB
(((	chr17:70556726-70557000(-)$1	1	47	50	8.9999
(((	chr11:68100198-68100478(+)$1	1	1	4	8.9999
.(.	chr8:134305195-134305456(-)$1	1	40	43	8.9999
..(	chr10:43903826-43904076(-)$1	1	7	10	8.9999
..)	chr2:58418554-58418849(-)$1	1	109	112	8.9999
...	chr19:50168041-50168352(-)$1	1	0	3	8.9999
.((	chr1:246383446-246383705(-)$1	1	5	8	8.9999
.((	chr21:38445774-38446052(+)$1	1	1	4	8.9999
)))	chr21:46292245-46292498(-)$1	1	50	53	8.9999
...	chr19:4059862-4060140(-)$1	1	17	20	8.9999
(((	chrX:73459859-73460200(-)$1	1	4	7	8.9999
...	chr2:235915976-235916244(+)$1	1	27	30	8.9999
(..	chr11:65194253-65194463(+)$1	1	30	33	8.9999
)))	chr17:75303494-75303742(+)$1	1	28	31	8.9999
(((	chr2:178128151-178128399(-)$1	1	147	150	8.9999
(((	chr8:134278249-134278460(-)$1	1	6	9	8.9999
...	chr20:60626490-60626758(-)$1	1	3	6	8.9999
).)	chr11:65195222-65195450(+)$1	1	206	209	8.9999
.((	chr6:2217069-2217375(-)$1	1	26	29	8.9999
.((	chr19:576752-576989(+)$1	1	16	19	8.9999
...	chr3:48471150-48471414(-)$1	1	13	16	8.9999
)))	chr8:11667271-11667533(+)$1	1	43	46	8.9999
((.	chr9:136855646-136855913(-)$1	1	33	36	8.9999
.((	chr2:231903208-231903454(+)$1	1	2	5	8.9999
(..	chr10:696824-697131(-)$1	1	3	6	8.9999
.((	chr10:104407890-104408144(+)$1	1	53	56	8.9999
(((	chr6:158986953-158987199(+)$1	1	34	37	8.9999
..(	chr2:236527696-236528014(+)$1	1	0	3	8.9999
).)	chr2:240320338-240320618(-)$1	1	61	64	8.9999
..(	chr8:144673536-144673782(-)$1	1	4	7	8.9999
.((	chr16:46941981-46942271(+)$1	1	20	23	8.9999
(..	chr8:13133582-13133845(-)$1	1	27	30	8.9999
(..	chr10:102758631-102758912(+)$1	1	42	45	8.9999
(((	chr2:240202226-240202562(-)$1	1	3	6	8.9999
).(	chr2:129041721-129042048(-)$1	1	37	40	8.9999
...	chr1:228276730-228277019(+)$1	1	3	6	8.9999
(((	chr2:65657670-65657977(-)$1	1	47	50	8.9999
...	chr9:136718471-136718714(-)$1	1	83	86	8.9999
(((	chr16:81521997-81522238(+)$1	1	9	12	8.9999
.((	chr16:23607160-23607493(-)$1	1	10	13	8.9999
.))	chr16:68298552-68298881(+)$1	1	27	30	8.9999
)))	chr10:105419562-105419804(-)$1	1	78	81	8.9999
).)	chr17:75450071-75450338(+)$1	1	65	68	8.9999
(((	chr2:11769627-11769918(+)$1	1	0	3	8.9999
)))	chr3:195634220-195634483(-)$1	1	46	49	8.9999
)((	chr11:63894366-63894657(-)$1	1	42	45	8.9999
)))	chr11:65194455-65194669(+)$1	1	48	51	8.9999
)))	chr20:61286775-61287126(+)$1	1	24	27	8.9999
(((	chr11:43848494-43848823(+)$1	1	141	144	8.9999
).(	chr20:61568699-61569033(-)$1	1	22	25	8.9999
)))	chr12:69637248-69637588(+)$1	1	231	234	8.9999
((.	chr2:101437070-101437328(+)$1	1	24	27	8.9999
...	chr6:2218166-2218434(-)$1	1	38	41	8.9999
).)	chr11:65203245-65203471(+)$1	1	11	14	8.9999
(((	chr11:70934712-70934960(-)$1	1	8	11	8.9999
(..	chr16:89484353-89484611(-)$1	1	28	31	8.9999
(((	chr16:31198652-31198918(+)$1	1	31	34	8.9999
...	chr7:158249204-158249519(-)$1	1	18	21	8.9999
(((	chr8:144675066-144675279(-)$1	1	20	23	8.9999
.((	chr17:79962199-79962463(+)$1	1	81	84	8.9999
.).	chr7:2678271-2678543(+)$1	1	31	34	8.9999
(.(	chr9:136803838-136804126(-)$1	1	10	13	8.9999
((.	chr16:8961186-8961458(-)$1	1	8	11	8.9999
..(	chr3:12329490-12329764(+)$1	1	1	4	8.9999
.((	chr13:113445484-113445773(+)$1	1	12	15	8.9999
...	chr3:66021650-66021915(-)$1	1	116	119	8.9999
).)	chr11:65203227-65203445(+)$1	1	29	32	8.9999
(.(	chr11:129685768-129686028(+)$1	1	9	12	8.9999
)((	chr13:98866143-98866420(+)$1	1	17	20	8.9999
(((	chr2:241563196-241563454(+)$1	1	1	4	8.9999
(((	chr16:81527934-81528234(+)$1	1	8	11	8.9999
)..	chr7:139404557-139404833(-)$1	1	52	55	8.9999
(..	chr16:50592373-50592606(+)$1	1	7	10	8.9999
)))	chr16:8962509-8962759(-)$1	1	65	68	8.9999
.((	chr16:87890177-87890432(-)$1	1	16	19	8.9999
(((	chr12:8025158-8025442(-)$1	1	37	40	8.9999
..(	chr2:188387620-188387875(+)$1	1	49	52	8.9999
.((	chr17:55395737-55396012(+)$1	1	48	51	8.9999
(((	chr6:2245086-2245340(-)$1	1	9	12	8.9999
(((	chr8:125672891-125673197(-)$1	1	24	27	8.9999
(..	chr20:60722157-60722420(+)$1	1	4	7	8.9999
.))	chr10:5727483-5727743(+)$1	1	60	63	8.9999
)..	chr6:158452340-158452671(+)$1	1	44	47	8.9999
.((	chr8:134308972-134309242(-)$1	1	24	27	8.9999
...	chr19:41771242-41771482(+)$1	1	22	25	8.9999
(((	chr14:99986923-99987218(-)$1	1	1	4	8.9999
)).	chr8:123795910-123796206(+)$1	1	64	67	8.9999
(((	chr6:158986245-158986502(+)$1	1	11	14	8.9999
((.	chr4:1236773-1237015(-)$1	1	14	17	8.9999
(((	chr10:102758858-102759122(+)$1	1	35	38	8.9999
..(	chr9:136848709-136848963(-)$1	1	18	21	8.9999
((.	chr17:55479658-55479907(+)$1	1	22	25	8.9999
.(.	chr17:75415714-75415978(+)$1	1	80	83	8.9999
(((	chr19:2270253-2270568(+)$1	1	58	61	8.9999
(.(	chr11:66391444-66391715(+)$1	1	20	23	8.9999
(((	chr8:142416043-142416334(+)$1	1	0	3	8.9999
)).	chr14:24908336-24908590(+)$1	1	52	55	8.9999
...	chr2:11725542-11725877(+)$1	1	75	78	8.9999
...	chr8:144679209-144679499(-)$1	1	8	11	8.9999

#PSSM
G : 0.86	g : 0.13	
A : 0.86	a : 0.13	
G : 0.86	g : 0.13	

#score	890.9999999999998
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_UTR_m3_run1.nuc.txt

#NT
GCAC	chr22:21242443-21242727(+)$1	284	208	212	12.0000
GCAC	chr4:1019912-1020188(+)$1	276	42	46	12.0000
gcac	chr10:103879923-103880153(-)$1	230	0	4	12.0000
GCAC	chr17:56405575-56405829(-)$1	254	128	132	12.0000
GCAC	chr3:185649212-185649466(-)$1	254	90	94	12.0000
GCAC	chr19:10490951-10491227(-)$1	276	125	129	12.0000
GCAC	chr12:125398809-125399033(-)$1	224	205	209	12.0000
GCAC	chr7:106840502-106840758(+)$1	256	38	42	12.0000
GCAC	chr16:4740527-4740762(+)$1	235	3	7	12.0000
gcac	chr11:2152534-2152798(-)$1	264	9	13	12.0000
GCAC	chr13:113539199-113539468(+)$1	269	8	12	12.0000
GCAC	chr7:100075801-100076077(-)$1	276	253	257	12.0000
GCAC	chr21:46915424-46915653(+)$1	229	51	55	12.0000
GCAC	chr22:21242679-21242923(+)$1	244	125	129	12.0000
GCAC	chr7:128499126-128499342(+)$1	216	66	70	12.0000
GCAC	chr21:46915453-46915686(+)$1	233	22	26	12.0000
gcac	chr12:69051262-69051499(+)$1	237	65	69	12.0000
gcac	chr21:46915676-46915880(+)$1	204	16	20	12.0000
GCAC	chr16:4740433-4740727(+)$1	294	65	69	12.0000
GCAC	chr11:129992096-129992363(+)$1	267	56	60	12.0000
gcac	chr13:113539812-113540095(+)$1	283	15	19	12.0000
GCAC	chr22:38169768-38170046(+)$1	278	5	9	12.0000
gcac	chr11:2152660-2152912(-)$1	252	7	11	12.0000
GCAC	chr22:24313477-24313756(-)$1	279	21	25	12.0000
GCAC	chr16:4854790-4855008(-)$1	218	3	7	12.0000
gcac	chr13:113539898-113540144(+)$1	246	29	33	12.0000
gcac	chr4:1019475-1019812(+)$1	337	12	16	12.0000
GCAC	chr1:31345060-31345311(-)$1	251	218	222	12.0000
GCAC	chr17:38296684-38296934(+)$1	250	17	21	12.0000
gcac	chr14:102965245-102965508(+)$1	263	7	11	12.0000
gcac	chr9:97845609-97845852(+)$1	243	2	6	12.0000
gcac	chr21:46915546-46915797(+)$1	251	29	33	12.0000
GCAC	chr4:1018978-1019235(+)$1	257	12	16	12.0000
GCAC	chr16:4854620-4854869(-)$1	249	239	243	12.0000
GCAC	chr7:23561702-23561943(-)$1	241	38	42	12.0000
GCAC	chr10:50534924-50535238(+)$1	314	191	195	12.0000
GCAC	chr12:48438440-48438679(-)$1	239	218	222	12.0000
GCAC	chr7:128498540-128498805(+)$1	265	133	137	12.0000
gcac	chr21:47612291-47612518(-)$1	227	45	49	12.0000
GCAC	chr16:89367073-89367337(-)$1	264	50	54	12.0000
GCAC	chr16:4740127-4740386(+)$1	259	17	21	12.0000
gcac	chr16:29677288-29677580(+)$1	292	263	267	12.0000
gcac	chr21:46915623-46915876(+)$1	253	10	14	12.0000
GCAC	chr16:67209980-67210215(-)$1	235	163	167	12.0000
GCAC	chr16:67209714-67210005(-)$1	291	194	198	12.0000
GCAC	chr15:75952788-75953066(+)$1	278	45	49	12.0000
GCAC	chr19:10491049-10491306(-)$1	257	204	208	12.0000
GCAC	chr22:24313649-24313936(-)$1	287	201	205	12.0000
GCAC	chr22:50297245-50297529(-)$1	284	108	112	12.0000
GCAC	chr1:31205287-31205612(-)$1	325	35	39	12.0000
GCAC	chrX:154005157-154005410(+)$1	253	99	103	12.0000
GCAC	chr4:1019133-1019383(+)$1	250	5	9	12.0000
gcac	chr4:1019740-1019985(+)$1	245	6	10	12.0000
GCAC	chr7:128498760-128498993(+)$1	233	198	202	12.0000
gcac	chr22:20052560-20052802(+)$1	242	7	11	12.0000
GCAC	chr21:46494362-46494624(+)$1	262	32	36	12.0000
GCAC	chr22:19705579-19705832(+)$1	253	93	97	12.0000
gcac	chr17:56405629-56405983(-)$1	354	143	147	12.0000
gcac	chr21:46915604-46915808(+)$1	204	88	92	12.0000
gcac	chr13:113539357-113539608(+)$1	251	55	59	12.0000

#otherMatches

#Struct PSSM
ddmm	chr22:38169846-38170170(+)$1	324	51	55	12.0000
EEEE	chr22:21242443-21242727(+)$1	284	208	212	12.0000
d22c	chr4:1019912-1020188(+)$1	276	42	46	12.0000
::::	chr10:103879923-103880153(-)$1	230	0	4	12.0000
++++	chr17:56405575-56405829(-)$1	254	128	132	12.0000
ccnn	chr3:185649212-185649466(-)$1	254	90	94	12.0000
dd::	chr19:10490951-10491227(-)$1	276	125	129	12.0000
bb]f	chr12:125398809-125399033(-)$1	224	205	209	12.0000
RDDD	chr7:106840502-106840758(+)$1	256	38	42	12.0000
EEEK	chr16:4740527-4740762(+)$1	235	3	7	12.0000
CC::	chr11:2152534-2152798(-)$1	264	9	13	12.0000
nnnn	chr13:113539199-113539468(+)$1	269	8	12	12.0000
b[cc	chr7:100075801-100076077(-)$1	276	253	257	12.0000
qqqq	chr21:46915424-46915653(+)$1	229	51	55	12.0000
d"""	chr22:21242679-21242923(+)$1	244	125	129	12.0000
bb22	chr7:128499126-128499342(+)$1	216	66	70	12.0000
ccc2	chr21:46915453-46915686(+)$1	233	22	26	12.0000
ccmm	chr12:69051262-69051499(+)$1	237	65	69	12.0000
$$$$	chr21:46915676-46915880(+)$1	204	16	20	12.0000
dooo	chr16:4740433-4740727(+)$1	294	65	69	12.0000
pppp	chr11:129992096-129992363(+)$1	267	56	60	12.0000
ALLL	chr13:113539812-113540095(+)$1	283	15	19	12.0000
bbdd	chr22:38169768-38170046(+)$1	278	5	9	12.0000
CC::	chr11:2152660-2152912(-)$1	252	7	11	12.0000
d"""	chr22:24313477-24313756(-)$1	279	21	25	12.0000
D::b	chr16:4854790-4855008(-)$1	218	3	7	12.0000
HHHH	chr13:113539898-113540144(+)$1	246	29	33	12.0000
::::	chr4:1019475-1019812(+)$1	337	12	16	12.0000
DD@@	chr1:31345060-31345311(-)$1	251	218	222	12.0000
c"""	chr17:38296684-38296934(+)$1	250	17	21	12.0000
::::	chr14:102965245-102965508(+)$1	263	7	11	12.0000
:::C	chr9:97845609-97845852(+)$1	243	2	6	12.0000
hooo	chr21:46915546-46915797(+)$1	251	29	33	12.0000
fff"	chr4:1018978-1019235(+)$1	257	12	16	12.0000
BBYY	chr16:4854620-4854869(-)$1	249	239	243	12.0000
EEEE	chr7:23561702-23561943(-)$1	241	38	42	12.0000
]bb:	chr10:50534924-50535238(+)$1	314	191	195	12.0000
cc[b	chr12:48438440-48438679(-)$1	239	218	222	12.0000
eeee	chr7:128498540-128498805(+)$1	265	133	137	12.0000
7777	chr21:47612291-47612518(-)$1	227	45	49	12.0000
ccc]	chr16:89367073-89367337(-)$1	264	50	54	12.0000
E{FF	chr16:4740127-4740386(+)$1	259	17	21	12.0000
dddd	chr16:29677288-29677580(+)$1	292	263	267	12.0000
::::	chr21:46915623-46915876(+)$1	253	10	14	12.0000
e22=	chr16:67209980-67210215(-)$1	235	163	167	12.0000
ccc:	chr16:67209714-67210005(-)$1	291	194	198	12.0000
cc##	chr15:75952788-75953066(+)$1	278	45	49	12.0000
}DDD	chr19:10491049-10491306(-)$1	257	204	208	12.0000
::::	chr22:24313649-24313936(-)$1	287	201	205	12.0000
d444	chr22:50297245-50297529(-)$1	284	108	112	12.0000
cbb[	chr1:31205287-31205612(-)$1	325	35	39	12.0000
ddda	chrX:154005157-154005410(+)$1	253	99	103	12.0000
mmmm	chr4:1019133-1019383(+)$1	250	5	9	12.0000
CKKE	chr4:1019740-1019985(+)$1	245	6	10	12.0000
cc]b	chr7:128498760-128498993(+)$1	233	198	202	12.0000
gggg	chr22:20052560-20052802(+)$1	242	7	11	12.0000
[a[c	chr21:46494362-46494624(+)$1	262	32	36	12.0000
bb[c	chr22:19705579-19705832(+)$1	253	93	97	12.0000
dddo	chr17:56405629-56405983(-)$1	354	143	147	12.0000
$$$$	chr21:46915604-46915808(+)$1	204	88	92	12.0000
i:::	chr13:113539357-113539608(+)$1	251	55	59	12.0000

#DB
((..	chr22:38169846-38170170(+)$1	1	51	55	12.0000
))))	chr22:21242443-21242727(+)$1	1	208	212	12.0000
)..)	chr4:1019912-1020188(+)$1	1	42	46	12.0000
....	chr10:103879923-103880153(-)$1	1	0	4	12.0000
....	chr17:56405575-56405829(-)$1	1	128	132	12.0000
((..	chr3:185649212-185649466(-)$1	1	90	94	12.0000
))..	chr19:10490951-10491227(-)$1	1	125	129	12.0000
)).)	chr12:125398809-125399033(-)$1	1	205	209	12.0000
.(((	chr7:106840502-106840758(+)$1	1	38	42	12.0000
(((.	chr16:4740527-4740762(+)$1	1	3	7	12.0000
((..	chr11:2152534-2152798(-)$1	1	9	13	12.0000
....	chr13:113539199-113539468(+)$1	1	8	12	12.0000
(.((	chr7:100075801-100076077(-)$1	1	253	257	12.0000
....	chr21:46915424-46915653(+)$1	1	51	55	12.0000
(...	chr22:21242679-21242923(+)$1	1	125	129	12.0000
))..	chr7:128499126-128499342(+)$1	1	66	70	12.0000
))).	chr21:46915453-46915686(+)$1	1	22	26	12.0000
((..	chr12:69051262-69051499(+)$1	1	65	69	12.0000
....	chr21:46915676-46915880(+)$1	1	16	20	12.0000
(...	chr16:4740433-4740727(+)$1	1	65	69	12.0000
....	chr11:129992096-129992363(+)$1	1	56	60	12.0000
(...	chr13:113539812-113540095(+)$1	1	15	19	12.0000
((((	chr22:38169768-38170046(+)$1	1	5	9	12.0000
((..	chr11:2152660-2152912(-)$1	1	7	11	12.0000
(...	chr22:24313477-24313756(-)$1	1	21	25	12.0000
(..(	chr16:4854790-4855008(-)$1	1	3	7	12.0000
((((	chr13:113539898-113540144(+)$1	1	29	33	12.0000
....	chr4:1019475-1019812(+)$1	1	12	16	12.0000
))..	chr1:31345060-31345311(-)$1	1	218	222	12.0000
(...	chr17:38296684-38296934(+)$1	1	17	21	12.0000
....	chr14:102965245-102965508(+)$1	1	7	11	12.0000
...(	chr9:97845609-97845852(+)$1	1	2	6	12.0000
(...	chr21:46915546-46915797(+)$1	1	29	33	12.0000
(((.	chr4:1018978-1019235(+)$1	1	12	16	12.0000
))..	chr16:4854620-4854869(-)$1	1	239	243	12.0000
((((	chr7:23561702-23561943(-)$1	1	38	42	12.0000
.)).	chr10:50534924-50535238(+)$1	1	191	195	12.0000
((.(	chr12:48438440-48438679(-)$1	1	218	222	12.0000
))))	chr7:128498540-128498805(+)$1	1	133	137	12.0000
....	chr21:47612291-47612518(-)$1	1	45	49	12.0000
))).	chr16:89367073-89367337(-)$1	1	50	54	12.0000
(.((	chr16:4740127-4740386(+)$1	1	17	21	12.0000
))))	chr16:29677288-29677580(+)$1	1	263	267	12.0000
....	chr21:46915623-46915876(+)$1	1	10	14	12.0000
)..)	chr16:67209980-67210215(-)$1	1	163	167	12.0000
))).	chr16:67209714-67210005(-)$1	1	194	198	12.0000
((..	chr15:75952788-75953066(+)$1	1	45	49	12.0000
.)))	chr19:10491049-10491306(-)$1	1	204	208	12.0000
....	chr22:24313649-24313936(-)$1	1	201	205	12.0000
)...	chr22:50297245-50297529(-)$1	1	108	112	12.0000
)((.	chr1:31205287-31205612(-)$1	1	35	39	12.0000
((((	chrX:154005157-154005410(+)$1	1	99	103	12.0000
....	chr4:1019133-1019383(+)$1	1	5	9	12.0000
(..(	chr4:1019740-1019985(+)$1	1	6	10	12.0000
)).)	chr7:128498760-128498993(+)$1	1	198	202	12.0000
((((	chr22:20052560-20052802(+)$1	1	7	11	12.0000
.(.(	chr21:46494362-46494624(+)$1	1	32	36	12.0000
((.(	chr22:19705579-19705832(+)$1	1	93	97	12.0000
(((.	chr17:56405629-56405983(-)$1	1	143	147	12.0000
....	chr21:46915604-46915808(+)$1	1	88	92	12.0000
)...	chr13:113539357-113539608(+)$1	1	55	59	12.0000

#PSSM
G : 0.68	g : 0.31	
C : 0.68	c : 0.31	
A : 0.68	a : 0.31	
C : 0.68	c : 0.31	

#score	732.0000000000001
#seq	61
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_UTR_m1_run2.nuc.txt

#NT
UUCCUUUUUU	chr6:146226214-146226479(-)$1	265	99	109	18.2258
UUCCUCUUCU	chr9:116169969-116170304(-)$1	335	28	38	19.7580
UUCCUCUUAU	chr6:52367689-52367951(-)$1	262	124	134	15.3225
UUCUUUUUCU	chr6:155585307-155585579(-)$1	272	80	90	18.6290
UCCCUUUUCU	chr4:71655672-71655935(+)$1	263	113	123	18.1451
uuccaucucu	chr12:66250402-66250655(+)$1	253	97	107	15.6451
UCUCUUUUCU	chr19:54378175-54378406(+)$1	231	51	61	14.9999
uucuuugucu	chr4:1385316-1385551(+)$1	235	12	22	15.2419
UUUCCUUUCU	chr7:100164437-100164687(+)$1	250	36	46	15.2419
uuccuucucu	chr4:1386200-1386460(+)$1	260	102	112	19.7580
uuccuuuucu	chr9:71397809-71398106(+)$1	297	27	37	22.3387
UUCCUUUUCC	chr1:91966560-91966837(+)$1	277	35	45	18.7096
uuccccuucu	chr3:11848721-11849008(-)$1	287	45	55	15.8064
UUCCUUUUCC	chr2:85548048-85548273(-)$1	225	15	25	18.7096
UUCCUCUUCU	chr12:75896667-75897036(-)$1	369	78	88	19.7580
UUCUUUUCCU	chr1:91966696-91966938(+)$1	242	178	188	14.2741
UUCCAUCUCU	chr7:100164388-100164613(+)$1	225	7	17	15.6451
uucuuauucu	chr9:71398139-71398400(+)$1	261	58	68	15.0806
uuccuucucu	chr4:1386081-1386329(+)$1	248	221	231	19.7580
UUCUUUUCCU	chr1:91966648-91966896(+)$1	248	226	236	14.2741
uugcuuuucc	chr12:66250228-66250485(+)$1	257	9	19	15.7258
UUCCUUCUUU	chr2:85547142-85547408(-)$1	266	232	242	15.6451
UUCCUUCCCU	chr6:131203615-131203890(-)$1	275	52	62	15.4032
UUCAUUCUCU	chr2:85547919-85548195(-)$1	276	106	116	15.6451
uugcuuuucc	chr12:66250141-66250412(+)$1	271	96	106	15.7258
UUGCUUUUUU	chr16:23583505-23583793(+)$1	288	39	49	15.2419
UUCCUUUUCC	chr2:85548130-85548414(-)$1	284	156	166	18.7096
uuccuguuuu	chr2:71213573-71213823(-)$1	250	92	102	14.8387
UUCCUUUUCC	chr2:85548214-85548444(-)$1	230	186	196	18.7096
uuccuuuacu	chr2:176791610-176791897(-)$1	287	205	215	17.8225
uucuuucucu	chr11:62566392-62566665(-)$1	273	2	12	16.0483
UUCCUCUUCA	chr2:242688146-242688438(+)$1	292	80	90	15.5645
UUCCUGCUCU	chr3:187897874-187898152(+)$1	278	28	38	16.3709
UUCAUUCUCU	chr2:85547858-85548119(-)$1	261	30	40	15.6451
cuccuuuucu	chr7:73108551-73108869(+)$1	318	235	245	17.6612
UUCCUCUUCU	chr19:45912459-45912728(-)$1	269	111	121	19.7580
ucccuucucu	chr2:240124-240375(-)$1	251	81	91	15.5645
uuucuuuucu	chr10:124146443-124146716(+)$1	273	236	246	19.1935
UUUCUUUUCU	chr19:16511909-16512183(-)$1	274	47	57	19.1935
uuccucuucu	chr16:58054423-58054813(+)$1	390	2	12	19.7580
UUGCCUUUCU	chrX:40509290-40509632(-)$1	342	92	102	15.4032
uucucuuucu	chr5:92919062-92919323(+)$1	261	41	51	14.6774
UGCCUCUUCU	chr12:49330278-49330599(-)$1	321	67	77	15.3225
UUGCUUCUCU	chr2:85547387-85547685(-)$1	298	147	157	16.7741
UUCCUUGUCC	chr17:79878638-79878893(-)$1	255	167	177	15.3225
CUCCUUUUCU	chr2:71214961-71215314(-)$1	353	155	165	17.6612
UUGCUUCUCU	chr2:85547328-85547579(-)$1	251	41	51	16.7741
UUCCAUUUCU	chr12:49330033-49330310(-)$1	277	60	70	18.2258
UUGCUCUUCU	chr11:6635106-6635387(-)$1	281	196	206	16.7741
UUGCUUUUUU	chr11:66406180-66406433(+)$1	253	228	238	15.2419
UUCCUCUUCU	chr19:45911825-45912096(-)$1	271	109	119	19.7580
UUUCUUUUCU	chr14:76117658-76117919(-)$1	261	99	109	19.1935
UUCCUUUUCU	chr20:34820053-34820322(+)$1	269	91	101	22.3387
UACCUUUUCU	chr11:57585398-57585684(+)$1	286	139	149	17.9032
uuccucuucc	chr19:54377741-54377976(+)$1	235	109	119	16.1290
UUCCUCAUCU	chr2:169721722-169722064(-)$1	342	143	153	16.2096
uuucuuuucu	chr19:54377776-54378028(+)$1	252	240	250	19.1935
uuccuugucu	chr4:1385761-1386007(+)$1	246	93	103	18.9516
UCUCUUUUCU	chr19:54378125-54378371(+)$1	246	101	111	14.9999
UUCCUGUUCU	chr6:7282275-7282593(-)$1	318	81	91	18.9516
UUGCCUUUCU	chrX:48328258-48328509(-)$1	251	198	208	15.4032

#otherMatches

#Struct PSSM
GGGGGGGKKG	chr5:112228337-112228641(-)$1	304	17	27	15.2419
FFFFFF::::	chr6:146226214-146226479(-)$1	265	99	109	18.2258
::::::::::	chr9:116169969-116170304(-)$1	335	28	38	19.7580
gg^^^^^^^^	chr6:52367689-52367951(-)$1	262	124	134	15.3225
yyyyyyyyyy	chr6:155585307-155585579(-)$1	272	80	90	18.6290
^^^^^^^^^^	chr4:71655672-71655935(+)$1	263	113	123	18.1451
ccc22eeeee	chr12:66250402-66250655(+)$1	253	97	107	15.6451
^^^^^^^^^^	chr19:54378175-54378406(+)$1	231	51	61	14.9999
sssssdddd:	chr4:1385316-1385551(+)$1	235	12	22	15.2419
=========[	chr7:100164437-100164687(+)$1	250	36	46	15.2419
ccc[cccooo	chr4:1386200-1386460(+)$1	260	102	112	19.7580
ccc!!dddd"	chr9:71397809-71398106(+)$1	297	27	37	22.3387
b"""======	chr1:91966560-91966837(+)$1	277	35	45	18.7096
::::::::::	chr3:11848721-11849008(-)$1	287	45	55	15.8064
::::::::::	chr2:85548048-85548273(-)$1	225	15	25	18.7096
3bb666666e	chr12:75896667-75897036(-)$1	369	78	88	19.7580
wgggggggee	chr1:91966696-91966938(+)$1	242	178	188	14.2741
::::::::::	chr7:100164388-100164613(+)$1	225	7	17	15.6451
::::::::::	chr9:71398139-71398400(+)$1	261	58	68	15.0806
:::ddddooo	chr4:1386081-1386329(+)$1	248	221	231	19.7580
qqqqqqqqdd	chr1:91966648-91966896(+)$1	248	226	236	14.2741
:::::::::C	chr12:66250228-66250485(+)$1	257	9	19	15.7258
@@@@@@@@@@	chr2:85547142-85547408(-)$1	266	232	242	15.6451
^^^^^^^^^^	chr6:131203615-131203890(-)$1	275	52	62	15.4032
!!bb####bb	chr2:85547919-85548195(-)$1	276	106	116	15.6451
HHHHHHH:EE	chr12:66250141-66250412(+)$1	271	96	106	15.7258
ccc[iiiiii	chr16:23583505-23583793(+)$1	288	39	49	15.2419
d>>>>>>>>>	chr2:85548130-85548414(-)$1	284	156	166	18.7096
iiiiiiiii]	chr2:71213573-71213823(-)$1	250	92	102	14.8387
d>>>>>>>>>	chr2:85548214-85548444(-)$1	230	186	196	18.7096
ppppppbb22	chr2:176791610-176791897(-)$1	287	205	215	17.8225
::::::::::	chr11:62566392-62566665(-)$1	273	2	12	16.0483
mmmmbb]bbh	chr2:242688146-242688438(+)$1	292	80	90	15.5645
::::::::::	chr3:187897874-187898152(+)$1	278	28	38	16.3709
:::::IIIII	chr2:85547858-85548119(-)$1	261	30	40	15.6451
eeqqqqqqqq	chr7:73108551-73108869(+)$1	318	235	245	17.6612
>>>>>>>>>>	chr19:45912459-45912728(-)$1	269	111	121	19.7580
eeeqqqqqqq	chr2:240124-240375(-)$1	251	81	91	15.5645
qqqqqqqqff	chr10:124146443-124146716(+)$1	273	236	246	19.1935
:::::::JJJ	chr19:16511909-16512183(-)$1	274	47	57	19.1935
::::::::::	chr16:58054423-58054813(+)$1	390	2	12	19.7580
::::::::::	chrX:40509290-40509632(-)$1	342	92	102	15.4032
::::::::::	chr5:92919062-92919323(+)$1	261	41	51	14.6774
KFFFFFFGGG	chr12:49330278-49330599(-)$1	321	67	77	15.3225
:cccssssss	chr2:85547387-85547685(-)$1	298	147	157	16.7741
000000iiii	chr17:79878638-79878893(-)$1	255	167	177	15.3225
eecccnnnnn	chr2:71214961-71215314(-)$1	353	155	165	17.6612
:cccssssss	chr2:85547328-85547579(-)$1	251	41	51	16.7741
yyyyyyyyyy	chr12:49330033-49330310(-)$1	277	60	70	18.2258
+++++++++e	chr11:6635106-6635387(-)$1	281	196	206	16.7741
tttttttfff	chr11:66406180-66406433(+)$1	253	228	238	15.2419
00000000a2	chr19:45911825-45912096(-)$1	271	109	119	19.7580
gggggg!!bb	chr14:76117658-76117919(-)$1	261	99	109	19.1935
::::::::::	chr20:34820053-34820322(+)$1	269	91	101	22.3387
b[ffffffoo	chr11:57585398-57585684(+)$1	286	139	149	17.9032
::::::::::	chr19:54377741-54377976(+)$1	235	109	119	16.1290
eeee888888	chr2:169721722-169722064(-)$1	342	143	153	16.2096
::::::::::	chr19:54377776-54378028(+)$1	252	240	250	19.1935
%%%%gggggg	chr4:1385761-1386007(+)$1	246	93	103	18.9516
^^^^^^^^^^	chr19:54378125-54378371(+)$1	246	101	111	14.9999
::::::::::	chr6:7282275-7282593(-)$1	318	81	91	18.9516
frrrrrrrrr	chrX:48328258-48328509(-)$1	251	198	208	15.4032

#DB
(((((((..(	chr5:112228337-112228641(-)$1	1	17	27	15.2419
((((((....	chr6:146226214-146226479(-)$1	1	99	109	18.2258
..........	chr9:116169969-116170304(-)$1	1	28	38	19.7580
((........	chr6:52367689-52367951(-)$1	1	124	134	15.3225
..........	chr6:155585307-155585579(-)$1	1	80	90	18.6290
..........	chr4:71655672-71655935(+)$1	1	113	123	18.1451
)))..)))))	chr12:66250402-66250655(+)$1	1	97	107	15.6451
..........	chr19:54378175-54378406(+)$1	1	51	61	14.9999
.....)))).	chr4:1385316-1385551(+)$1	1	12	22	15.2419
(((((((((.	chr7:100164437-100164687(+)$1	1	36	46	15.2419
(((.(((...	chr4:1386200-1386460(+)$1	1	102	112	19.7580
(((..((((.	chr9:71397809-71398106(+)$1	1	27	37	22.3387
(...((((((	chr1:91966560-91966837(+)$1	1	35	45	18.7096
..........	chr3:11848721-11849008(-)$1	1	45	55	15.8064
..........	chr2:85548048-85548273(-)$1	1	15	25	18.7096
.))......)	chr12:75896667-75897036(-)$1	1	78	88	19.7580
.)))))))))	chr1:91966696-91966938(+)$1	1	178	188	14.2741
..........	chr7:100164388-100164613(+)$1	1	7	17	15.6451
..........	chr9:71398139-71398400(+)$1	1	58	68	15.0806
...((((...	chr4:1386081-1386329(+)$1	1	221	231	19.7580
........))	chr1:91966648-91966896(+)$1	1	226	236	14.2741
.........(	chr12:66250228-66250485(+)$1	1	9	19	15.7258
..........	chr2:85547142-85547408(-)$1	1	232	242	15.6451
..........	chr6:131203615-131203890(-)$1	1	52	62	15.4032
..((....((	chr2:85547919-85548195(-)$1	1	106	116	15.6451
))))))).((	chr12:66250141-66250412(+)$1	1	96	106	15.7258
(((.((((((	chr16:23583505-23583793(+)$1	1	39	49	15.2419
).........	chr2:85548130-85548414(-)$1	1	156	166	18.7096
))))))))).	chr2:71213573-71213823(-)$1	1	92	102	14.8387
).........	chr2:85548214-85548444(-)$1	1	186	196	18.7096
......))..	chr2:176791610-176791897(-)$1	1	205	215	17.8225
..........	chr11:62566392-62566665(-)$1	1	2	12	16.0483
....)).)))	chr2:242688146-242688438(+)$1	1	80	90	15.5645
..........	chr3:187897874-187898152(+)$1	1	28	38	16.3709
.....(((((	chr2:85547858-85548119(-)$1	1	30	40	15.6451
((........	chr7:73108551-73108869(+)$1	1	235	245	17.6612
..........	chr19:45912459-45912728(-)$1	1	111	121	19.7580
(((.......	chr2:240124-240375(-)$1	1	81	91	15.5645
........))	chr10:124146443-124146716(+)$1	1	236	246	19.1935
.......(((	chr19:16511909-16512183(-)$1	1	47	57	19.1935
..........	chr16:58054423-58054813(+)$1	1	2	12	19.7580
..........	chrX:40509290-40509632(-)$1	1	92	102	15.4032
..........	chr5:92919062-92919323(+)$1	1	41	51	14.6774
.(((((((((	chr12:49330278-49330599(-)$1	1	67	77	15.3225
.(((......	chr2:85547387-85547685(-)$1	1	147	157	16.7741
......))))	chr17:79878638-79878893(-)$1	1	167	177	15.3225
(((((.....	chr2:71214961-71215314(-)$1	1	155	165	17.6612
.(((......	chr2:85547328-85547579(-)$1	1	41	51	16.7741
..........	chr12:49330033-49330310(-)$1	1	60	70	18.2258
.........(	chr11:6635106-6635387(-)$1	1	196	206	16.7741
.......)))	chr11:66406180-66406433(+)$1	1	228	238	15.2419
........).	chr19:45911825-45912096(-)$1	1	109	119	19.7580
((((((..((	chr14:76117658-76117919(-)$1	1	99	109	19.1935
..........	chr20:34820053-34820322(+)$1	1	91	101	22.3387
(.((((((..	chr11:57585398-57585684(+)$1	1	139	149	17.9032
..........	chr19:54377741-54377976(+)$1	1	109	119	16.1290
))))......	chr2:169721722-169722064(-)$1	1	143	153	16.2096
..........	chr19:54377776-54378028(+)$1	1	240	250	19.1935
....((((((	chr4:1385761-1386007(+)$1	1	93	103	18.9516
..........	chr19:54378125-54378371(+)$1	1	101	111	14.9999
..........	chr6:7282275-7282593(-)$1	1	81	91	18.9516
(.........	chrX:48328258-48328509(-)$1	1	198	208	15.4032

#PSSM
U : 0.66	u : 0.30	c : 0.01	C : 0.01	
U : 0.59	u : 0.30	C : 0.04	c : 0.01	G : 0.01	A : 0.01	
C : 0.48	c : 0.25	G : 0.11	U : 0.08	g : 0.03	u : 0.03	
C : 0.59	c : 0.25	u : 0.06	U : 0.04	A : 0.03	
U : 0.59	u : 0.27	C : 0.04	c : 0.03	A : 0.03	a : 0.01	
U : 0.48	u : 0.24	C : 0.16	c : 0.04	G : 0.03	a : 0.01	g : 0.01	
U : 0.51	u : 0.20	C : 0.12	c : 0.08	g : 0.03	G : 0.01	A : 0.01	
U : 0.61	u : 0.30	C : 0.04	G : 0.01	a : 0.01	
C : 0.59	c : 0.30	U : 0.06	A : 0.01	u : 0.01	
U : 0.58	u : 0.27	C : 0.08	c : 0.04	A : 0.01	

#score	1059.9999999999986
#seq	62
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_CDS_m2_run1.nuc.txt

#NT
GGAGGCCAG	chr20:30193406-30193690(+)$1	284	259	268	15.9090
GGAGGGCAG	chr19:54632331-54632615(+)$1	284	49	58	12.5454
GGGGACCGG	chr20:61457489-61457709(+)$1	220	111	120	12.7272
GGAGCCCGG	chr10:105614844-105615117(-)$1	273	32	41	13.3636
GGAGAACAG	chr17:4790932-4791189(+)$1	257	224	233	13.9999
GGAGACUGG	chr9:117051425-117051671(+)$1	246	28	37	10.7272
GGAGUCCAU	chr16:50642158-50642373(+)$1	215	119	128	10.6363
AGAGACCAG	chr4:69202712-69203053(-)$1	341	188	197	14.3636
GGAGACCAG	chr19:5593786-5594052(-)$1	266	180	189	17.9090
GGAGCCCAG	chr16:685561-685820(-)$1	259	217	226	16.0909
GGCGCCCAG	chr5:32173764-32174079(-)$1	315	298	307	13.1818
AGUGACCAG	chr6:33164162-33164482(-)$1	320	221	230	11.6363
GCAGGCCAG	chr9:131029616-131029889(-)$1	273	186	195	12.5454
GGAGCCGAG	chr14:24711422-24711770(-)$1	348	83	92	11.5454
CGUGACCAG	chr10:75457205-75457528(-)$1	323	216	225	11.6363
CGUGACCAG	chr3:15900774-15901085(-)$1	311	193	202	11.6363
GGAGAGCGG	chr22:36682692-36682919(-)$1	227	173	182	11.8181
GGCAACCAG	chr11:67810082-67810377(+)$1	295	167	176	10.3636
UGGGACCAG	chr2:101650020-101650322(-)$1	302	27	36	11.9090
GGAGGCCCG	chr12:132528663-132529000(+)$1	337	120	129	12.6363
GGAGAGCAG	chr9:117008045-117008293(+)$1	248	136	145	14.5454
GGAGACUUG	chr17:80442590-80442874(+)$1	284	102	111	10.2727
CGAGAGCAG	chrX:70516691-70516998(+)$1	307	13	22	11.0000
GGUGCCCAG	chr20:3765435-3765710(-)$1	275	50	59	13.3636
GGAGGCCGG	chr20:3765569-3765866(-)$1	297	178	187	13.1818
GGCGACCGG	chr2:96932051-96932325(+)$1	274	142	151	12.2727
GGAGCCCGG	chr17:2598640-2598952(-)$1	312	250	259	13.3636
UGGGACCAG	chr9:35740387-35740657(-)$1	270	186	195	11.9090
GCAGAGCAG	chr11:72405962-72406230(-)$1	268	36	45	11.1818
GCUGACCAG	chr14:39649876-39650186(+)$1	310	237	246	11.8181
GCAGACCUG	chr20:61459215-61459428(+)$1	213	60	69	11.3636
GGGGACCAG	chr14:24108979-24109191(+)$1	212	97	106	15.4545
GGAGACCCG	chr8:145742986-145743304(-)$1	318	308	317	14.6363
CGAGACCUG	chr17:73897831-73898102(-)$1	271	193	202	11.1818
GGAGCCCCG	chr2:219557248-219557480(+)$1	232	56	65	12.8181
GGGGAGCAG	chr21:46914707-46914930(+)$1	223	171	180	12.0909
GCGGACCAG	chr11:379343-379629(+)$1	286	6	15	12.0909
GGUGAGCAG	chr11:67810825-67811065(+)$1	240	138	147	11.8181
GUGGACCAG	chr3:32933087-32933365(+)$1	278	12	21	11.5454
UGAGGCCAG	chr16:28965786-28966080(+)$1	294	222	231	12.3636
GGAGCCAAG	chr3:48732554-48732882(-)$1	328	55	64	11.5454
GGAGCCCGG	chr20:25462567-25462834(-)$1	267	183	192	13.3636
GGGGACCAG	chr3:9730534-9730856(+)$1	322	37	46	15.4545
GGAGCUCAG	chr14:103571245-103571488(+)$1	243	155	164	12.3636
GGAGGCCUG	chr8:145692254-145692545(+)$1	291	28	37	12.7272
GGGCACCAG	chrX:68836416-68836685(+)$1	269	123	132	10.8181
AGAGUCCAG	chr13:52325388-52325681(+)$1	293	61	70	11.9090
GGCGACCGG	chr19:57334857-57335067(-)$1	210	0	9	12.2727
UCAGACCAG	chr19:54969551-54969800(+)$1	249	211	220	11.0000
GGAGGUCAG	chr1:19923465-19923721(+)$1	256	229	238	12.1818
AGAGUCCAG	chr17:4442953-4443257(-)$1	304	252	261	11.9090
GGAUGCCAG	chr14:53417108-53417396(-)$1	288	129	138	11.2727
GCAGUCCAG	chr11:124492795-124493094(+)$1	299	228	237	12.0909
GCAGCCCAG	chr11:72407521-72407798(-)$1	277	30	39	12.7272

#otherMatches

#Struct PSSM
cnnnnnccc	chr20:57568462-57568701(+)$1	239	37	46	10.2727
b22bb333c	chr20:30193406-30193690(+)$1	284	259	268	15.9090
"""ddddll	chr19:54632331-54632615(+)$1	284	49	58	12.5454
mccc]ffff	chr20:61457489-61457709(+)$1	220	111	120	12.7272
DD{DDDDKK	chr10:105614844-105615117(-)$1	273	32	41	13.3636
}CCC~~~~A	chr17:4790932-4791189(+)$1	257	224	233	13.9999
C::::JJJJ	chr9:117051425-117051671(+)$1	246	28	37	10.7272
ffffff333	chr16:50642158-50642373(+)$1	215	119	128	10.6363
B{EEEEEQQ	chr4:69202712-69203053(-)$1	341	188	197	14.3636
::a[ccc[b	chr19:5593786-5594052(-)$1	266	180	189	17.9090
FF}CCC}BB	chr16:685561-685820(-)$1	259	217	226	16.0909
GGGGGGYYB	chr5:32173764-32174079(-)$1	315	298	307	13.1818
ddd777777	chr6:33164162-33164482(-)$1	320	221	230	11.6363
gggggg:GG	chr9:131029616-131029889(-)$1	273	186	195	12.5454
ffffffddd	chr14:24711422-24711770(-)$1	348	83	92	11.5454
mccc::ddd	chr10:75457205-75457528(-)$1	323	216	225	11.6363
fff:cccnn	chr3:15900774-15901085(-)$1	311	193	202	11.6363
FFFF}BBFF	chr22:36682692-36682919(-)$1	227	173	182	11.8181
hhhrrrrrr	chr11:67810082-67810377(+)$1	295	167	176	10.3636
mccc::::D	chr2:101650020-101650322(-)$1	302	27	36	11.9090
EEEE|||||	chr12:132528663-132529000(+)$1	337	120	129	12.6363
HHHHHA}EE	chr9:117008045-117008293(+)$1	248	136	145	14.5454
eeeeea]dd	chr17:80442590-80442874(+)$1	284	102	111	10.2727
:HHHHHHHH	chrX:70516691-70516998(+)$1	307	13	22	11.0000
pppdddd22	chr20:3765435-3765710(-)$1	275	50	59	13.3636
cc]a]eeee	chr20:3765569-3765866(-)$1	297	178	187	13.1818
cclllccc6	chr2:96932051-96932325(+)$1	274	142	151	12.2727
2bbddddA}	chr17:2598640-2598952(-)$1	312	250	259	13.3636
oeeeee:II	chr9:35740387-35740657(-)$1	270	186	195	11.9090
ff:::====	chr11:72405962-72406230(-)$1	268	36	45	11.1818
fffqqqqqq	chr14:39649876-39650186(+)$1	310	237	246	11.8181
GG:::gggg	chr20:61459215-61459428(+)$1	213	60	69	11.3636
ffff[eeee	chr14:24108979-24109191(+)$1	212	97	106	15.4545
ammmmaccc	chr8:145742986-145743304(-)$1	318	308	317	14.6363
b]ddddeee	chr17:73897831-73898102(-)$1	271	193	202	11.1818
====="""c	chr2:219557248-219557480(+)$1	232	56	65	12.8181
FFFYYDDDD	chr21:46914707-46914930(+)$1	223	171	180	12.0909
EEE{BBKKD	chr11:379343-379629(+)$1	286	6	15	12.0909
bb]dddd]b	chr11:67810825-67811065(+)$1	240	138	147	11.8181
MMCCC:::I	chr3:32933087-32933365(+)$1	278	12	21	11.5454
'''''hhhh	chr16:28965786-28966080(+)$1	294	222	231	12.3636
dddbb:::C	chr3:48732554-48732882(-)$1	328	55	64	11.5454
:::ddddmm	chr20:25462567-25462834(-)$1	267	183	192	13.3636
EEEKKEEEE	chr3:9730534-9730856(+)$1	322	37	46	15.4545
cc]hhhhhh	chr14:103571245-103571488(+)$1	243	155	164	12.3636
eedddd[cc	chr8:145692254-145692545(+)$1	291	28	37	12.7272
eebb]bbff	chrX:68836416-68836685(+)$1	269	123	132	10.8181
fff22a]ee	chr13:52325388-52325681(+)$1	293	61	70	11.9090
DDDD:::::	chr19:57334857-57335067(-)$1	210	0	9	12.2727
::::::::D	chr19:54969551-54969800(+)$1	249	211	220	11.0000
hhhhhhlll	chr1:19923465-19923721(+)$1	256	229	238	12.1818
5555ccc::	chr17:4442953-4443257(-)$1	304	252	261	11.9090
ccc]dddd2	chr14:53417108-53417396(-)$1	288	129	138	11.2727
bbbb333cc	chr11:124492795-124493094(+)$1	299	228	237	12.0909
ggggbbCCC	chr11:72407521-72407798(-)$1	277	30	39	12.7272

#DB
(.....)))	chr20:57568462-57568701(+)$1	1	37	46	10.2727
)..))...)	chr20:30193406-30193690(+)$1	1	259	268	15.9090
...((((..	chr19:54632331-54632615(+)$1	1	49	58	12.5454
.))).))))	chr20:61457489-61457709(+)$1	1	111	120	12.7272
((.((((..	chr10:105614844-105615117(-)$1	1	32	41	13.3636
.)))....)	chr17:4790932-4791189(+)$1	1	224	233	13.9999
(....((((	chr9:117051425-117051671(+)$1	1	28	37	10.7272
))))))...	chr16:50642158-50642373(+)$1	1	119	128	10.6363
(.(((((..	chr4:69202712-69203053(-)$1	1	188	197	14.3636
..(.(((.(	chr19:5593786-5594052(-)$1	1	180	189	17.9090
)).))).))	chr16:685561-685820(-)$1	1	217	226	16.0909
))))))..)	chr5:32173764-32174079(-)$1	1	298	307	13.1818
)))......	chr6:33164162-33164482(-)$1	1	221	230	11.6363
)))))).))	chr9:131029616-131029889(-)$1	1	186	195	12.5454
)))))))))	chr14:24711422-24711770(-)$1	1	83	92	11.5454
.)))..(((	chr10:75457205-75457528(-)$1	1	216	225	11.6363
))).(((..	chr3:15900774-15901085(-)$1	1	193	202	11.6363
)))).))))	chr22:36682692-36682919(-)$1	1	173	182	11.8181
(((......	chr11:67810082-67810377(+)$1	1	167	176	10.3636
.)))....(	chr2:101650020-101650322(-)$1	1	27	36	11.9090
)))).....	chr12:132528663-132529000(+)$1	1	120	129	12.6363
)))))).))	chr9:117008045-117008293(+)$1	1	136	145	14.5454
)))))).))	chr17:80442590-80442874(+)$1	1	102	111	10.2727
.((((((((	chrX:70516691-70516998(+)$1	1	13	22	11.0000
...))))..	chr20:3765435-3765710(-)$1	1	50	59	13.3636
)).).))))	chr20:3765569-3765866(-)$1	1	178	187	13.1818
((...))).	chr2:96932051-96932325(+)$1	1	142	151	12.2727
.))))))).	chr17:2598640-2598952(-)$1	1	250	259	13.3636
.))))).((	chr9:35740387-35740657(-)$1	1	186	195	11.9090
))...((((	chr11:72405962-72406230(-)$1	1	36	45	11.1818
(((......	chr14:39649876-39650186(+)$1	1	237	246	11.8181
((...((((	chr20:61459215-61459428(+)$1	1	60	69	11.3636
((((.((((	chr14:24108979-24109191(+)$1	1	97	106	15.4545
(....))))	chr8:145742986-145743304(-)$1	1	308	317	14.6363
).)))))))	chr17:73897831-73898102(-)$1	1	193	202	11.1818
(((((...(	chr2:219557248-219557480(+)$1	1	56	65	12.8181
)))..))))	chr21:46914707-46914930(+)$1	1	171	180	12.0909
(((.((..(	chr11:379343-379629(+)$1	1	6	15	12.0909
)).)))).)	chr11:67810825-67811065(+)$1	1	138	147	11.8181
..(((...(	chr3:32933087-32933365(+)$1	1	12	21	11.5454
.....((((	chr16:28965786-28966080(+)$1	1	222	231	12.3636
)))))...(	chr3:48732554-48732882(-)$1	1	55	64	11.5454
...((((..	chr20:25462567-25462834(-)$1	1	183	192	13.3636
(((..((((	chr3:9730534-9730856(+)$1	1	37	46	15.4545
)).))))))	chr14:103571245-103571488(+)$1	1	155	164	12.3636
((((((.((	chr8:145692254-145692545(+)$1	1	28	37	12.7272
)))).))))	chrX:68836416-68836685(+)$1	1	123	132	10.8181
)))..).))	chr13:52325388-52325681(+)$1	1	61	70	11.9090
((((.....	chr19:57334857-57335067(-)$1	1	0	9	12.2727
........)	chr19:54969551-54969800(+)$1	1	211	220	11.0000
((((((...	chr1:19923465-19923721(+)$1	1	229	238	12.1818
....)))..	chr17:4442953-4443257(-)$1	1	252	261	11.9090
))).)))).	chr14:53417108-53417396(-)$1	1	129	138	11.2727
))))...))	chr11:124492795-124493094(+)$1	1	228	237	12.0909
))))))(((	chr11:72407521-72407798(-)$1	1	30	39	12.7272

#PSSM
G : 0.78	A : 0.07	C : 0.07	U : 0.07	
G : 0.81	C : 0.14	U : 0.03	
A : 0.65	G : 0.16	U : 0.10	C : 0.07	
G : 0.94	A : 0.01	C : 0.01	U : 0.01	
A : 0.56	C : 0.20	G : 0.16	U : 0.07	
C : 0.80	G : 0.12	U : 0.05	A : 0.01	
C : 0.92	U : 0.03	G : 0.01	A : 0.01	
A : 0.70	G : 0.16	U : 0.07	C : 0.05	
G : 0.98	U : 0.01	

#score	687.3636363636363
#seq	55
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_transcript_m3_run1.nuc.txt

#NT
GAA	chr14:73572503-73572794(+)$1	291	13	16	8.9999
GAA	chr6:41904971-41905241(-)$1	270	132	135	8.9999
GAA	chr8:124089372-124089631(+)$1	259	38	41	8.9999
GAA	chr2:39499538-39499797(-)$1	259	13	16	8.9999
GAA	chr15:55483119-55483361(-)$1	242	2	5	8.9999
GAA	chr10:112343034-112343284(+)$1	250	0	3	8.9999
GAA	chr1:244599992-244600259(-)$1	267	64	67	8.9999
GAA	chr2:70456073-70456344(-)$1	271	70	73	8.9999
GAA	chr3:47210552-47210789(+)$1	237	17	20	8.9999
GAA	chr5:10255943-10256196(+)$1	253	22	25	8.9999
GAA	chr12:72004742-72004985(-)$1	243	161	164	8.9999
GAA	chrX:102470087-102470349(+)$1	262	53	56	8.9999
GAA	chr1:32798214-32798451(+)$1	237	4	7	8.9999
GAA	chr17:62498198-62498457(-)$1	259	23	26	8.9999
GAA	chr16:28844579-28844841(+)$1	262	67	70	8.9999
GAA	chr2:203167531-203167827(+)$1	296	17	20	8.9999
GAA	chr16:70578233-70578474(+)$1	241	13	16	8.9999
GAA	chr8:126017810-126018071(+)$1	261	12	15	8.9999
GAA	chr6:114279775-114280083(-)$1	308	22	25	8.9999
GAA	chr12:56197396-56197623(-)$1	227	201	204	8.9999
GAA	chr5:61781112-61781394(+)$1	282	100	103	8.9999
GAA	chr6:30584812-30585059(-)$1	247	118	121	8.9999
GAA	chrX:135961350-135961599(-)$1	249	19	22	8.9999
GAA	chr7:157015841-157016086(+)$1	245	25	28	8.9999
GAA	chrX:77373591-77373832(+)$1	241	4	7	8.9999
GAA	chr15:75687083-75687333(-)$1	250	88	91	8.9999
gaa	chr7:30614214-30614483(-)$1	269	5	8	8.9999
GAA	chr7:30656604-30656836(+)$1	232	46	49	8.9999
GAA	chr7:104715151-104715456(+)$1	305	61	64	8.9999
gaa	chr7:140051096-140051397(-)$1	301	49	52	8.9999
GAA	chr1:172520678-172520951(+)$1	273	58	61	8.9999
GAA	chr1:19499983-19500224(-)$1	241	158	161	8.9999
GAA	chr1:145115607-145115860(+)$1	253	167	170	8.9999
GAA	chr3:141640685-141640957(+)$1	272	132	135	8.9999
GAA	chr5:145859549-145859821(+)$1	272	49	52	8.9999
GAA	chr5:33445376-33445657(+)$1	281	65	68	8.9999
GAA	chr2:61522083-61522312(-)$1	229	146	149	8.9999
GAA	chr7:158436853-158437102(-)$1	249	70	73	8.9999
GAA	chr17:15976618-15976905(-)$1	287	29	32	8.9999
GAA	chr21:40627630-40627878(-)$1	248	46	49	8.9999
GAA	chr15:79179484-79179771(+)$1	287	30	33	8.9999
GAA	chr1:24975180-24975498(+)$1	318	2	5	8.9999
GAA	chr9:86584220-86584455(-)$1	235	25	28	8.9999
GAA	chr16:28969912-28970195(+)$1	283	4	7	8.9999
GAA	chr1:173834191-173834425(-)$1	234	50	53	8.9999
GAA	chr18:739701-739930(-)$1	229	13	16	8.9999
GAA	chr1:173834897-173835117(-)$1	220	41	44	8.9999
GAA	chr1:21099961-21100220(-)$1	259	120	123	8.9999
GAA	chr1:19472253-19472461(-)$1	208	33	36	8.9999
gaa	chr12:104341055-104341309(+)$1	254	36	39	8.9999
GAA	chr1:65890927-65891243(+)$1	316	260	263	8.9999
gaa	chr17:18965291-18965539(+)$1	248	3	6	8.9999
gaa	chr2:97560171-97560440(-)$1	269	208	211	8.9999
GAA	chr16:23428298-23428563(-)$1	265	42	45	8.9999
GAA	chr6:126332065-126332333(+)$1	268	20	23	8.9999
GAA	chr1:29485878-29486110(-)$1	232	80	83	8.9999
GAA	chr7:1488251-1488502(-)$1	251	55	58	8.9999
GAA	chr19:16198846-16199098(+)$1	252	56	59	8.9999
GAA	chr1:94363199-94363452(-)$1	253	15	18	8.9999
GAA	chr20:57563849-57564088(+)$1	239	56	59	8.9999
GAA	chr21:40636646-40636921(-)$1	275	99	102	8.9999
GAA	chr1:22013590-22013841(-)$1	251	35	38	8.9999
GAA	chr12:133251275-133251522(-)$1	247	6	9	8.9999
GAA	chr5:148886560-148886817(-)$1	257	9	12	8.9999
GAA	chr2:175246312-175246619(-)$1	307	130	133	8.9999
GAA	chr1:32403281-32403532(-)$1	251	52	55	8.9999
GAA	chr12:62785542-62785808(+)$1	266	29	32	8.9999
GAA	chr7:112098916-112099197(+)$1	281	65	68	8.9999
GAA	chr3:142738805-142739029(+)$1	224	22	25	8.9999
gaa	chr9:100777545-100777750(+)$1	205	105	108	8.9999
GAA	chr9:100773454-100773712(+)$1	258	74	77	8.9999
GAA	chr2:15735556-15735821(+)$1	265	79	82	8.9999
GAA	chr6:43745681-43745903(+)$1	222	50	53	8.9999
gaa	chr12:6879008-6879274(+)$1	266	86	89	8.9999
GAA	chr4:83820752-83821012(-)$1	260	5	8	8.9999
gaa	chr9:138839443-138839694(-)$1	251	165	168	8.9999
GAA	chr5:137902558-137902802(-)$1	244	7	10	8.9999
GAA	chr19:15510029-15510317(-)$1	288	116	119	8.9999
GAA	chr9:114155834-114156141(-)$1	307	139	142	8.9999
GAA	chr12:122995579-122995843(-)$1	264	12	15	8.9999
GAA	chr5:32395144-32395379(-)$1	235	21	24	8.9999
GAA	chr4:83821021-83821278(-)$1	257	7	10	8.9999
GAA	chr2:38804471-38804722(-)$1	251	54	57	8.9999
GAA	chr2:61521991-61522283(-)$1	292	117	120	8.9999
GAA	chr15:69072690-69072914(-)$1	224	108	111	8.9999
GAA	chr5:40835099-40835374(-)$1	275	16	19	8.9999
GAA	chr2:29169381-29169695(+)$1	314	39	42	8.9999
GAA	chr20:32441468-32441697(+)$1	229	110	113	8.9999
GAA	chr8:64081813-64082112(+)$1	299	148	151	8.9999
GAA	chr12:54687017-54687306(-)$1	289	59	62	8.9999
GAA	chr21:40716908-40717147(-)$1	239	10	13	8.9999
GAA	chr1:22408169-22408423(+)$1	254	84	87	8.9999
GAA	chrX:23801452-23801712(+)$1	260	12	15	8.9999
GAA	chr18:2700408-2700676(+)$1	268	39	42	8.9999
GAA	chr6:35856579-35856816(-)$1	237	32	35	8.9999

#otherMatches

#Struct PSSM
)))	chr8:42251603-42251854(+)$1	251	15	18	8.9999
FF:	chr14:73572503-73572794(+)$1	291	13	16	8.9999
JJJ	chr6:41904971-41905241(-)$1	270	132	135	8.9999
HHH	chr8:124089372-124089631(+)$1	259	38	41	8.9999
GGG	chr2:39499538-39499797(-)$1	259	13	16	8.9999
c!!	chr15:55483119-55483361(-)$1	242	2	5	8.9999
:::	chr10:112343034-112343284(+)$1	250	0	3	8.9999
CCC	chr1:244599992-244600259(-)$1	267	64	67	8.9999
GGG	chr2:70456073-70456344(-)$1	271	70	73	8.9999
doo	chr3:47210552-47210789(+)$1	237	17	20	8.9999
qgg	chr5:10255943-10256196(+)$1	253	22	25	8.9999
DDD	chr12:72004742-72004985(-)$1	243	161	164	8.9999
ctt	chrX:102470087-102470349(+)$1	262	53	56	8.9999
ee"	chr1:32798214-32798451(+)$1	237	4	7	8.9999
eee	chr17:62498198-62498457(-)$1	259	23	26	8.9999
ppp	chr16:28844579-28844841(+)$1	262	67	70	8.9999
^^^	chr2:203167531-203167827(+)$1	296	17	20	8.9999
FKK	chr16:70578233-70578474(+)$1	241	13	16	8.9999
CCP	chr8:126017810-126018071(+)$1	261	12	15	8.9999
===	chr6:114279775-114280083(-)$1	308	22	25	8.9999
888	chr12:56197396-56197623(-)$1	227	201	204	8.9999
dd]	chr5:61781112-61781394(+)$1	282	100	103	8.9999
ddd	chr6:30584812-30585059(-)$1	247	118	121	8.9999
:GG	chrX:135961350-135961599(-)$1	249	19	22	8.9999
EEE	chr7:157015841-157016086(+)$1	245	25	28	8.9999
:::	chrX:77373591-77373832(+)$1	241	4	7	8.9999
ddd	chr15:75687083-75687333(-)$1	250	88	91	8.9999
:::	chr7:30614214-30614483(-)$1	269	5	8	8.9999
JJJ	chr7:30656604-30656836(+)$1	232	46	49	8.9999
^^^	chr7:104715151-104715456(+)$1	305	61	64	8.9999
fff	chr7:140051096-140051397(-)$1	301	49	52	8.9999
%%%	chr1:172520678-172520951(+)$1	273	58	61	8.9999
cc:	chr1:19499983-19500224(-)$1	241	158	161	8.9999
dd:	chr1:145115607-145115860(+)$1	253	167	170	8.9999
rrr	chr3:141640685-141640957(+)$1	272	132	135	8.9999
JJJ	chr5:145859549-145859821(+)$1	272	49	52	8.9999
sss	chr5:33445376-33445657(+)$1	281	65	68	8.9999
fff	chr2:61522083-61522312(-)$1	229	146	149	8.9999
c::	chr7:158436853-158437102(-)$1	249	70	73	8.9999
ggg	chr17:15976618-15976905(-)$1	287	29	32	8.9999
HHH	chr21:40627630-40627878(-)$1	248	46	49	8.9999
dd:	chr15:79179484-79179771(+)$1	287	30	33	8.9999
:CC	chr1:24975180-24975498(+)$1	318	2	5	8.9999
hhp	chr9:86584220-86584455(-)$1	235	25	28	8.9999
E::	chr16:28969912-28970195(+)$1	283	4	7	8.9999
WWW	chr1:173834191-173834425(-)$1	234	50	53	8.9999
hhh	chr18:739701-739930(-)$1	229	13	16	8.9999
ffm	chr1:173834897-173835117(-)$1	220	41	44	8.9999
HHH	chr1:21099961-21100220(-)$1	259	120	123	8.9999
hhh	chr1:19472253-19472461(-)$1	208	33	36	8.9999
^^^	chr12:104341055-104341309(+)$1	254	36	39	8.9999
CCC	chr1:65890927-65891243(+)$1	316	260	263	8.9999
DDD	chr17:18965291-18965539(+)$1	248	3	6	8.9999
:::	chr2:97560171-97560440(-)$1	269	208	211	8.9999
::E	chr16:23428298-23428563(-)$1	265	42	45	8.9999
:::	chr6:126332065-126332333(+)$1	268	20	23	8.9999
ccc	chr1:29485878-29486110(-)$1	232	80	83	8.9999
d!!	chr7:1488251-1488502(-)$1	251	55	58	8.9999
CCC	chr19:16198846-16199098(+)$1	252	56	59	8.9999
KKF	chr1:94363199-94363452(-)$1	253	15	18	8.9999
bb!	chr20:57563849-57564088(+)$1	239	56	59	8.9999
KKE	chr21:40636646-40636921(-)$1	275	99	102	8.9999
g!!	chr1:22013590-22013841(-)$1	251	35	38	8.9999
:::	chr12:133251275-133251522(-)$1	247	6	9	8.9999
GGF	chr5:148886560-148886817(-)$1	257	9	12	8.9999
EEM	chr2:175246312-175246619(-)$1	307	130	133	8.9999
:::	chr1:32403281-32403532(-)$1	251	52	55	8.9999
xxx	chr12:62785542-62785808(+)$1	266	29	32	8.9999
FFU	chr7:112098916-112099197(+)$1	281	65	68	8.9999
f^^	chr3:142738805-142739029(+)$1	224	22	25	8.9999
bb3	chr9:100777545-100777750(+)$1	205	105	108	8.9999
ddd	chr9:100773454-100773712(+)$1	258	74	77	8.9999
hhh	chr2:15735556-15735821(+)$1	265	79	82	8.9999
"""	chr6:43745681-43745903(+)$1	222	50	53	8.9999
zzz	chr12:6879008-6879274(+)$1	266	86	89	8.9999
ggd	chr4:83820752-83821012(-)$1	260	5	8	8.9999
mmm	chr9:138839443-138839694(-)$1	251	165	168	8.9999
JJJ	chr5:137902558-137902802(-)$1	244	7	10	8.9999
:::	chr19:15510029-15510317(-)$1	288	116	119	8.9999
fff	chr9:114155834-114156141(-)$1	307	139	142	8.9999
:::	chr12:122995579-122995843(-)$1	264	12	15	8.9999
ccc	chr5:32395144-32395379(-)$1	235	21	24	8.9999
:::	chr4:83821021-83821278(-)$1	257	7	10	8.9999
fff	chr2:38804471-38804722(-)$1	251	54	57	8.9999
fff	chr2:61521991-61522283(-)$1	292	117	120	8.9999
ddd	chr15:69072690-69072914(-)$1	224	108	111	8.9999
fff	chr5:40835099-40835374(-)$1	275	16	19	8.9999
$dd	chr2:29169381-29169695(+)$1	314	39	42	8.9999
666	chr20:32441468-32441697(+)$1	229	110	113	8.9999
ggg	chr8:64081813-64082112(+)$1	299	148	151	8.9999
eee	chr12:54687017-54687306(-)$1	289	59	62	8.9999
nnn	chr21:40716908-40717147(-)$1	239	10	13	8.9999
mmm	chr1:22408169-22408423(+)$1	254	84	87	8.9999
D::	chrX:23801452-23801712(+)$1	260	12	15	8.9999
333	chr18:2700408-2700676(+)$1	268	39	42	8.9999
III	chr6:35856579-35856816(-)$1	237	32	35	8.9999

#DB
...	chr8:42251603-42251854(+)$1	1	15	18	8.9999
((.	chr14:73572503-73572794(+)$1	1	13	16	8.9999
)))	chr6:41904971-41905241(-)$1	1	132	135	8.9999
(((	chr8:124089372-124089631(+)$1	1	38	41	8.9999
(((	chr2:39499538-39499797(-)$1	1	13	16	8.9999
(..	chr15:55483119-55483361(-)$1	1	2	5	8.9999
...	chr10:112343034-112343284(+)$1	1	0	3	8.9999
(((	chr1:244599992-244600259(-)$1	1	64	67	8.9999
(((	chr2:70456073-70456344(-)$1	1	70	73	8.9999
(..	chr3:47210552-47210789(+)$1	1	17	20	8.9999
.))	chr5:10255943-10256196(+)$1	1	22	25	8.9999
)))	chr12:72004742-72004985(-)$1	1	161	164	8.9999
(..	chrX:102470087-102470349(+)$1	1	53	56	8.9999
((.	chr1:32798214-32798451(+)$1	1	4	7	8.9999
)))	chr17:62498198-62498457(-)$1	1	23	26	8.9999
...	chr16:28844579-28844841(+)$1	1	67	70	8.9999
...	chr2:203167531-203167827(+)$1	1	17	20	8.9999
(..	chr16:70578233-70578474(+)$1	1	13	16	8.9999
((.	chr8:126017810-126018071(+)$1	1	12	15	8.9999
)))	chr6:114279775-114280083(-)$1	1	22	25	8.9999
...	chr12:56197396-56197623(-)$1	1	201	204	8.9999
)).	chr5:61781112-61781394(+)$1	1	100	103	8.9999
)))	chr6:30584812-30585059(-)$1	1	118	121	8.9999
.((	chrX:135961350-135961599(-)$1	1	19	22	8.9999
(((	chr7:157015841-157016086(+)$1	1	25	28	8.9999
...	chrX:77373591-77373832(+)$1	1	4	7	8.9999
(((	chr15:75687083-75687333(-)$1	1	88	91	8.9999
...	chr7:30614214-30614483(-)$1	1	5	8	8.9999
(((	chr7:30656604-30656836(+)$1	1	46	49	8.9999
...	chr7:104715151-104715456(+)$1	1	61	64	8.9999
)))	chr7:140051096-140051397(-)$1	1	49	52	8.9999
...	chr1:172520678-172520951(+)$1	1	58	61	8.9999
)).	chr1:19499983-19500224(-)$1	1	158	161	8.9999
)).	chr1:145115607-145115860(+)$1	1	167	170	8.9999
...	chr3:141640685-141640957(+)$1	1	132	135	8.9999
(((	chr5:145859549-145859821(+)$1	1	49	52	8.9999
...	chr5:33445376-33445657(+)$1	1	65	68	8.9999
)))	chr2:61522083-61522312(-)$1	1	146	149	8.9999
)..	chr7:158436853-158437102(-)$1	1	70	73	8.9999
)))	chr17:15976618-15976905(-)$1	1	29	32	8.9999
(((	chr21:40627630-40627878(-)$1	1	46	49	8.9999
)).	chr15:79179484-79179771(+)$1	1	30	33	8.9999
.((	chr1:24975180-24975498(+)$1	1	2	5	8.9999
((.	chr9:86584220-86584455(-)$1	1	25	28	8.9999
(..	chr16:28969912-28970195(+)$1	1	4	7	8.9999
...	chr1:173834191-173834425(-)$1	1	50	53	8.9999
(((	chr18:739701-739930(-)$1	1	13	16	8.9999
((.	chr1:173834897-173835117(-)$1	1	41	44	8.9999
)))	chr1:21099961-21100220(-)$1	1	120	123	8.9999
)))	chr1:19472253-19472461(-)$1	1	33	36	8.9999
...	chr12:104341055-104341309(+)$1	1	36	39	8.9999
)))	chr1:65890927-65891243(+)$1	1	260	263	8.9999
(((	chr17:18965291-18965539(+)$1	1	3	6	8.9999
...	chr2:97560171-97560440(-)$1	1	208	211	8.9999
..(	chr16:23428298-23428563(-)$1	1	42	45	8.9999
...	chr6:126332065-126332333(+)$1	1	20	23	8.9999
)))	chr1:29485878-29486110(-)$1	1	80	83	8.9999
(..	chr7:1488251-1488502(-)$1	1	55	58	8.9999
(((	chr19:16198846-16199098(+)$1	1	56	59	8.9999
..(	chr1:94363199-94363452(-)$1	1	15	18	8.9999
((.	chr20:57563849-57564088(+)$1	1	56	59	8.9999
..(	chr21:40636646-40636921(-)$1	1	99	102	8.9999
(..	chr1:22013590-22013841(-)$1	1	35	38	8.9999
...	chr12:133251275-133251522(-)$1	1	6	9	8.9999
(((	chr5:148886560-148886817(-)$1	1	9	12	8.9999
((.	chr2:175246312-175246619(-)$1	1	130	133	8.9999
...	chr1:32403281-32403532(-)$1	1	52	55	8.9999
...	chr12:62785542-62785808(+)$1	1	29	32	8.9999
((.	chr7:112098916-112099197(+)$1	1	65	68	8.9999
(..	chr3:142738805-142739029(+)$1	1	22	25	8.9999
)).	chr9:100777545-100777750(+)$1	1	105	108	8.9999
(((	chr9:100773454-100773712(+)$1	1	74	77	8.9999
)))	chr2:15735556-15735821(+)$1	1	79	82	8.9999
...	chr6:43745681-43745903(+)$1	1	50	53	8.9999
...	chr12:6879008-6879274(+)$1	1	86	89	8.9999
(((	chr4:83820752-83821012(-)$1	1	5	8	8.9999
...	chr9:138839443-138839694(-)$1	1	165	168	8.9999
(((	chr5:137902558-137902802(-)$1	1	7	10	8.9999
...	chr19:15510029-15510317(-)$1	1	116	119	8.9999
)))	chr9:114155834-114156141(-)$1	1	139	142	8.9999
...	chr12:122995579-122995843(-)$1	1	12	15	8.9999
)))	chr5:32395144-32395379(-)$1	1	21	24	8.9999
...	chr4:83821021-83821278(-)$1	1	7	10	8.9999
(((	chr2:38804471-38804722(-)$1	1	54	57	8.9999
)))	chr2:61521991-61522283(-)$1	1	117	120	8.9999
)))	chr15:69072690-69072914(-)$1	1	108	111	8.9999
)))	chr5:40835099-40835374(-)$1	1	16	19	8.9999
.((	chr2:29169381-29169695(+)$1	1	39	42	8.9999
...	chr20:32441468-32441697(+)$1	1	110	113	8.9999
)))	chr8:64081813-64082112(+)$1	1	148	151	8.9999
(((	chr12:54687017-54687306(-)$1	1	59	62	8.9999
...	chr21:40716908-40717147(-)$1	1	10	13	8.9999
...	chr1:22408169-22408423(+)$1	1	84	87	8.9999
(..	chrX:23801452-23801712(+)$1	1	12	15	8.9999
...	chr18:2700408-2700676(+)$1	1	39	42	8.9999
(((	chr6:35856579-35856816(-)$1	1	32	35	8.9999

#PSSM
G : 0.91	g : 0.08	
A : 0.91	a : 0.08	
A : 0.91	a : 0.08	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_UTR_m1_run2.nuc.txt

#NT
gaagguggg	chr9:100777550-100777862(+)$1	312	103	112	20.1818
ggggguggg	chr6:34664399-34664668(-)$1	269	90	99	19.7272
UAGGGUGGG	chr16:28847428-28847693(+)$1	265	222	231	19.2727
GAGGUUGGG	chr19:3053628-3053889(-)$1	261	90	99	18.8181
GAGGGUGGG	chr11:289415-289685(+)$1	270	65	74	22.9090
GAUGGUGUG	chr6:31698294-31698539(-)$1	245	49	58	15.6363
GAGGGUGGG	chr2:97525522-97525809(-)$1	287	185	194	22.9090
GAAGGUGGG	chr2:220403042-220403331(+)$1	289	92	101	20.1818
GAGGGUGGG	chr5:177022806-177023059(+)$1	253	88	97	22.9090
AAGGGUGGG	chr7:158424080-158424350(-)$1	270	99	108	19.2727

#otherMatches

#Struct PSSM
eeeedddd2	chr14:70238205-70238473(+)$1	268	76	85	19.7272
33ccc22hh	chr9:100777550-100777862(+)$1	312	103	112	20.1818
EEEMMMMEE	chr6:34664399-34664668(-)$1	269	90	99	19.7272
22eeeeecc	chr16:28847428-28847693(+)$1	265	222	231	19.2727
@@@@DDDDD	chr19:3053628-3053889(-)$1	261	90	99	18.8181
>>a]hhhhh	chr11:289415-289685(+)$1	270	65	74	22.9090
===22ccc2	chr6:31698294-31698539(-)$1	245	49	58	15.6363
=======[c	chr2:97525522-97525809(-)$1	287	185	194	22.9090
::::ddddo	chr2:220403042-220403331(+)$1	289	92	101	20.1818
\\IIIIIII	chr5:177022806-177023059(+)$1	253	88	97	22.9090
ggggooooo	chr7:158424080-158424350(-)$1	270	99	108	19.2727

#DB
)))))))).	chr14:70238205-70238473(+)$1	1	76	85	19.7272
..)))..))	chr9:100777550-100777862(+)$1	1	103	112	20.1818
(((....((	chr6:34664399-34664668(-)$1	1	90	99	19.7272
..)))))((	chr16:28847428-28847693(+)$1	1	222	231	19.2727
....)))))	chr19:3053628-3053889(-)$1	1	90	99	18.8181
..).)))))	chr11:289415-289685(+)$1	1	65	74	22.9090
)))..))).	chr6:31698294-31698539(-)$1	1	49	58	15.6363
(((((((.(	chr2:97525522-97525809(-)$1	1	185	194	22.9090
....((((.	chr2:220403042-220403331(+)$1	1	92	101	20.1818
..)))))))	chr5:177022806-177023059(+)$1	1	88	97	22.9090
((((.....	chr7:158424080-158424350(-)$1	1	99	108	19.2727

#PSSM
G : 0.63	g : 0.18	U : 0.09	A : 0.09	
A : 0.72	G : 0.09	a : 0.09	g : 0.09	
G : 0.63	a : 0.09	g : 0.09	U : 0.09	A : 0.09	
G : 0.81	g : 0.18	
G : 0.72	g : 0.18	U : 0.09	
U : 0.81	u : 0.18	
G : 0.81	g : 0.18	
G : 0.72	g : 0.18	U : 0.09	
G : 0.81	g : 0.18	

#score	221.5454545454546
#seq	11
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_UTR_m1_run2.nuc.txt

#NT
GGCCGCGCCGGAGGC	chr20:389134-389359(+)$1	225	141	156	24.2156
ggcggcggcggcggc	chr19:531688-532046(+)$1	358	99	114	36.6666
ggcggcggcggcggc	chr6:170123811-170124179(-)$1	368	61	76	36.6666
ggcggcggcggcggg	chr2:236403051-236403335(+)$1	284	232	247	32.6470
ggcggcggcggcggc	chr6:7910856-7911123(-)$1	267	236	251	36.6666
agcggcggcggcggc	chr5:171710612-171710980(-)$1	368	247	262	32.8431
GAUGGCGGCGGGGGC	chr6:117996575-117996882(+)$1	307	92	107	26.2745
CGCGGCGGCGGCGGC	chr15:99192099-99192343(+)$1	244	114	129	32.9411
ggcggcggcggcggc	chr16:30087251-30087565(+)$1	314	78	93	36.6666
ggaggcggcggcggc	chr14:91976136-91976386(-)$1	250	9	24	33.1372
ggggucgggggcggc	chr9:6645419-6645724(-)$1	305	267	282	24.9019
GAGAGCGGCGGCGGC	chr6:163835949-163836179(+)$1	230	42	57	25.0980
ggcggcggcggcggc	chr18:19321232-19321519(+)$1	287	266	281	36.6666
GGCGGAGGAGCCGGC	chr8:98787972-98788273(+)$1	301	167	182	23.9215
ggcggcggcggcggg	chr17:77813034-77813322(-)$1	288	161	176	32.6470
UGCAGCGGCGGCGGC	chr7:2883609-2883945(-)$1	336	14	29	28.4313
GGCCGCGGCUGAGGC	chr2:220408233-220408513(-)$1	280	5	20	24.7058
ggcggcggcggcggc	chr1:44444912-44445262(+)$1	350	98	113	36.6666
GGCUGGGGCGGCAGC	chr7:150038526-150038816(-)$1	290	166	181	23.6274
GGCGGCGGUGGCGGC	chr10:98346576-98346890(-)$1	314	7	22	32.9411
GGCGGCGGGGGCCGC	chr16:22385523-22385861(-)$1	338	193	208	28.4313
cgcggcggcgggggc	chr9:137218243-137218568(+)$1	325	2	17	29.7058
ggcggcagcggcggc	chr1:193091215-193091490(+)$1	275	68	83	32.1568
GGAGGCGGCGGCGGC	chr14:32546304-32546562(+)$1	258	235	250	33.1372
ggcggcggcggcggc	chr1:150947009-150947328(-)$1	319	54	69	36.6666
ugcggcggggccggc	chr17:16945976-16946284(+)$1	308	70	85	24.4117
cgcggcggccgcggc	chr16:58059579-58059999(+)$1	420	56	71	28.7254
ggcggcggaggcggc	chr6:34664390-34664660(-)$1	270	58	73	33.0392
GGGGGCGGCGGGGGA	chr11:27493753-27494029(-)$1	276	102	117	25.9803
GACGGCGGCUGGGGC	chr17:80193757-80193985(+)$1	228	175	190	25.2941
GGUGGCGGCGGCGAC	chr14:50359900-50360303(+)$1	403	337	352	29.0196
GGGGGCGGCCGCAGC	chr20:278121-278416(+)$1	295	143	158	24.9019
ggcggcggcgggggc	chr16:431824-432076(-)$1	252	192	207	33.4313
gguggcgguggcggc	chr19:17356538-17356819(-)$1	281	126	141	29.8039
agcggcggcggcggc	chr16:9185511-9185829(+)$1	318	48	63	32.8431
gccgggggcggcggc	chr1:1284360-1284623(-)$1	263	3	18	28.1372
gguggcgguggcggc	chr19:17356440-17356738(-)$1	298	45	60	29.8039
GGCGGGAGCGGGGGC	chr17:79918704-79918978(-)$1	274	60	75	24.6078
GGCGGCGGCGGCGAC	chr3:194207218-194207513(-)$1	295	109	124	32.1568
ggcggcggcggcggc	chr1:150947128-150947402(-)$1	274	128	143	36.6666
ggcggcggcggcggc	chr16:9057189-9057444(-)$1	255	3	18	36.6666
AGCGGCGCCGGCGGC	chr16:87902809-87903179(-)$1	370	183	198	28.2352
gcgggcggcggcggg	chr6:41514401-41514690(+)$1	289	108	123	25.1960
CGCGGCCGCGGCGGC	chr1:16482276-16482659(-)$1	383	288	303	28.3333
GACGGCGGCUGCAGC	chr6:167369867-167370136(-)$1	269	128	143	24.2156
ggcggcggcggcggc	chr19:1020848-1021214(-)$1	366	264	279	36.6666
GGCGGCGGCAGAGGA	chr11:67888649-67888929(-)$1	280	65	80	24.6078
ggcggcggcggcggc	chr22:19418931-19419248(-)$1	317	43	58	36.6666
GGUGGCGGCGGCGUC	chr4:1794973-1795244(+)$1	271	53	68	28.9215
GGCGGCGGAGGAGGG	chr17:48943258-48943624(-)$1	366	262	277	25.4901

#otherMatches

#Struct PSSM
nnndddd:::::::=	chr20:57467342-57467598(+)$1	256	117	132	26.6666
fdddd]eeeeeeeee	chr20:389134-389359(+)$1	225	141	156	24.2156
[eeeee[bb[ddddc	chr19:531688-532046(+)$1	358	99	114	36.6666
[bb!!a!!bb[a!!c	chr6:170123811-170124179(-)$1	368	61	76	36.6666
dddffffffiiiiii	chr2:236403051-236403335(+)$1	284	232	247	32.6470
JJJJJJJJJJJJ}DD	chr6:7910856-7911123(-)$1	267	236	251	36.6666
b]a]bb]bb333ccc	chr5:171710612-171710980(-)$1	368	247	262	32.8431
wwggggggg:::CCC	chr6:117996575-117996882(+)$1	307	92	107	26.2745
iii[bbddddmmmmd	chr15:99192099-99192343(+)$1	244	114	129	32.9411
[bb[bbmmmmbb]bb	chr16:30087251-30087565(+)$1	314	78	93	36.6666
DD{CCC{CCC{FFFF	chr14:91976136-91976386(-)$1	250	9	24	33.1372
FFFFFFbb[cccmmm	chr9:6645419-6645724(-)$1	305	267	282	24.9019
dmmmmdddd]bb::e	chr6:163835949-163836179(+)$1	230	42	57	25.0980
dddd]ffffff]iii	chr18:19321232-19321519(+)$1	287	266	281	36.6666
dddddddffffff##	chr8:98787972-98788273(+)$1	301	167	182	23.9215
ffffffcccccc[gg	chr17:77813034-77813322(-)$1	288	161	176	32.6470
LEEEEEIIIIIIIII	chr7:2883609-2883945(-)$1	336	14	29	28.4313
DDD{EEEEE:::ccc	chr2:220408233-220408513(-)$1	280	5	20	24.7058
dd]eeeee]ccc]a]	chr1:44444912-44445262(+)$1	350	98	113	36.6666
!ggggggg[bb!!cc	chr7:150038526-150038816(-)$1	290	166	181	23.6274
mmmcccJJJJJJJJJ	chr10:98346576-98346890(-)$1	314	7	22	32.9411
nna]bb333======	chr16:22385523-22385861(-)$1	338	193	208	28.4313
:==========a[cc	chr9:137218243-137218568(+)$1	325	2	17	29.7058
g[bb[bb[a!!a!!a	chr1:193091215-193091490(+)$1	275	68	83	32.1568
:::FFFFFF}BBYYD	chr14:32546304-32546562(+)$1	258	235	250	33.1372
FFFF{CCCCCC{CCC	chr1:150947009-150947328(-)$1	319	54	69	36.6666
hCCCGGGGGGGffff	chr17:16945976-16946284(+)$1	308	70	85	24.4117
FF{DDDD:eeeeell	chr16:58059579-58059999(+)$1	420	56	71	28.7254
nbb:BB{A{A{BB{C	chr6:34664390-34664660(-)$1	270	58	73	33.0392
fffffEEEEEFFFFF	chr11:27493753-27494029(-)$1	276	102	117	25.9803
CCC}CCCFFFFFFYY	chr17:80193757-80193985(+)$1	228	175	190	25.2941
ga[dddd[bb[ffff	chr14:50359900-50360303(+)$1	403	337	352	29.0196
ccooooooccc333e	chr20:278121-278416(+)$1	295	143	158	24.9019
FFFFF}BBFFFFFF}	chr16:431824-432076(-)$1	252	192	207	33.4313
eeeee]bb::eeeee	chr19:17356538-17356819(-)$1	281	126	141	29.8039
::DDDD{BB{EEEEE	chr16:9185511-9185829(+)$1	318	48	63	32.8431
BBDDDDIIIIIIIII	chr1:1284360-1284623(-)$1	263	3	18	28.1372
{GGGGGGG::eeeee	chr19:17356440-17356738(-)$1	298	45	60	29.8039
e[ccc!!dddd[ddd	chr17:79918704-79918978(-)$1	274	60	75	24.6078
2eeeeeccc[bbppp	chr3:194207218-194207513(-)$1	295	109	124	32.1568
dddd[bbmmmmbb]d	chr1:150947128-150947402(-)$1	274	128	143	36.6666
HHHHHJJJJJJJJJJ	chr16:9057189-9057444(-)$1	255	3	18	36.6666
]bb:HHHHHHHHDDD	chr16:87902809-87903179(-)$1	370	183	198	28.2352
ddd22a22eeeee]a	chr6:41514401-41514690(+)$1	289	108	123	25.1960
dddmmmmddddgggg	chr1:16482276-16482659(-)$1	383	288	303	28.3333
:iiiiiiiii[dddd	chr6:167369867-167370136(-)$1	269	128	143	24.2156
[bbmmmmbb]a]ggg	chr19:1020848-1021214(-)$1	366	264	279	36.6666
========="""a!!	chr11:67888649-67888929(-)$1	280	65	80	24.6078
{BB{BB:bb[ggggg	chr22:19418931-19419248(-)$1	317	43	58	36.6666
iiii[dddd[bbppp	chr4:1794973-1795244(+)$1	271	53	68	28.9215
CCYYHHHHHHHHfff	chr17:48943258-48943624(-)$1	366	262	277	25.4901

#DB
...)))).......(	chr20:57467342-57467598(+)$1	1	117	132	26.6666
))))).)))))((((	chr20:389134-389359(+)$1	1	141	156	24.2156
.(((((.((.(((((	chr19:531688-532046(+)$1	1	99	114	36.6666
.((..(..((.(..(	chr6:170123811-170124179(-)$1	1	61	76	36.6666
)))))))))))))))	chr2:236403051-236403335(+)$1	1	232	247	32.6470
)))))))))))).))	chr6:7910856-7911123(-)$1	1	236	251	36.6666
).).)).))...)))	chr5:171710612-171710980(-)$1	1	247	262	32.8431
..)))))))...)))	chr6:117996575-117996882(+)$1	1	92	107	26.2745
(((.((((((....)	chr15:99192099-99192343(+)$1	1	114	129	32.9411
.((.((....)).))	chr16:30087251-30087565(+)$1	1	78	93	36.6666
((.(((.(((.((((	chr14:91976136-91976386(-)$1	1	9	24	33.1372
))))))((.(((...	chr9:6645419-6645724(-)$1	1	267	282	24.9019
(....)))).))..(	chr6:163835949-163836179(+)$1	1	42	57	25.0980
)))).)))))).)))	chr18:19321232-19321519(+)$1	1	266	281	36.6666
)))((((((((((..	chr8:98787972-98788273(+)$1	1	167	182	23.9215
((((((((((((.((	chr17:77813034-77813322(-)$1	1	161	176	32.6470
.((((((((((((((	chr7:2883609-2883945(-)$1	1	14	29	28.4313
(((.(((((...(((	chr2:220408233-220408513(-)$1	1	5	20	24.7058
)).))))).))).).	chr1:44444912-44445262(+)$1	1	98	113	36.6666
.(((((((.((..((	chr7:150038526-150038816(-)$1	1	166	181	23.6274
...)))(((((((((	chr10:98346576-98346890(-)$1	1	7	22	32.9411
..).))...))))))	chr16:22385523-22385861(-)$1	1	193	208	28.4313
.(((((((((((.((	chr9:137218243-137218568(+)$1	1	2	17	29.7058
(.((.((.(..(..(	chr1:193091215-193091490(+)$1	1	68	83	32.1568
...)))))).))..)	chr14:32546304-32546562(+)$1	1	235	250	33.1372
((((.((((((.(((	chr1:150947009-150947328(-)$1	1	54	69	36.6666
)((((((((((((((	chr17:16945976-16946284(+)$1	1	70	85	24.4117
((.((((.(((((..	chr16:58059579-58059999(+)$1	1	56	71	28.7254
.)).((.(.(.((.(	chr6:34664390-34664660(-)$1	1	58	73	33.0392
)))))))))))))))	chr11:27493753-27494029(-)$1	1	102	117	25.9803
))).)))))))))..	chr17:80193757-80193985(+)$1	1	175	190	25.2941
)(.((((.((.((((	chr14:50359900-50360303(+)$1	1	337	352	29.0196
((......)))...)	chr20:278121-278416(+)$1	1	143	158	24.9019
))))).)))))))).	chr16:431824-432076(-)$1	1	192	207	33.4313
))))).))..(((((	chr19:17356538-17356819(-)$1	1	126	141	29.8039
..((((.((.(((((	chr16:9185511-9185829(+)$1	1	48	63	32.8431
(((((((((((((((	chr1:1284360-1284623(-)$1	1	3	18	28.1372
.(((((((..(((((	chr19:17356440-17356738(-)$1	1	45	60	29.8039
(.(((..((((.(((	chr17:79918704-79918978(-)$1	1	60	75	24.6078
.)))))(((.((...	chr3:194207218-194207513(-)$1	1	109	124	32.1568
((((.((....)).)	chr1:150947128-150947402(-)$1	1	128	143	36.6666
(((((((((((((((	chr16:9057189-9057444(-)$1	1	3	18	36.6666
.)).)))))))))))	chr16:87902809-87903179(-)$1	1	183	198	28.2352
)))..)..))))).)	chr6:41514401-41514690(+)$1	1	108	123	25.1960
(((....))))))))	chr1:16482276-16482659(-)$1	1	288	303	28.3333
.(((((((((.((((	chr6:167369867-167370136(-)$1	1	128	143	24.2156
.((....)).).)))	chr19:1020848-1021214(-)$1	1	264	279	36.6666
(((((((((...(..	chr11:67888649-67888929(-)$1	1	65	80	24.6078
.((.((.((.(((((	chr22:19418931-19419248(-)$1	1	43	58	36.6666
((((.((((.((...	chr4:1794973-1795244(+)$1	1	53	68	28.9215
))..))))))))(((	chr17:48943258-48943624(-)$1	1	262	277	25.4901

#PSSM
g : 0.43	G : 0.39	a : 0.03	C : 0.03	c : 0.03	U : 0.01	u : 0.01	A : 0.01	
g : 0.49	G : 0.39	A : 0.07	c : 0.03	
c : 0.43	C : 0.31	U : 0.07	G : 0.05	g : 0.03	u : 0.03	a : 0.01	A : 0.01	
g : 0.52	G : 0.37	C : 0.03	A : 0.03	U : 0.01	
g : 0.50	G : 0.47	u : 0.01	
c : 0.50	C : 0.41	G : 0.03	A : 0.01	g : 0.01	
g : 0.50	G : 0.43	a : 0.01	A : 0.01	C : 0.01	
g : 0.52	G : 0.43	C : 0.03	
c : 0.43	C : 0.37	A : 0.05	g : 0.03	u : 0.03	U : 0.01	G : 0.01	a : 0.01	
g : 0.50	G : 0.37	U : 0.05	c : 0.01	C : 0.01	A : 0.01	
g : 0.50	G : 0.45	C : 0.01	c : 0.01	
c : 0.49	C : 0.29	G : 0.09	A : 0.07	g : 0.03	
g : 0.52	G : 0.39	A : 0.05	C : 0.01	
g : 0.52	G : 0.41	A : 0.03	U : 0.01	
c : 0.47	C : 0.41	g : 0.05	A : 0.03	G : 0.01	

#score	1538.9215686274506
#seq	51
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_transcript_m3_run2.nuc.txt

#NT
agug	chr15:69698750-69698998(+)$1	248	44	48	12.0000
agug	chr9:33352687-33352903(-)$1	216	39	43	12.0000
AGUG	chr13:78197470-78197714(+)$1	244	9	13	12.0000
agug	chr9:72926435-72926659(-)$1	224	57	61	12.0000
AGUG	chr9:19378796-19379003(-)$1	207	105	109	12.0000
agug	chr17:41084835-41085042(-)$1	207	98	102	12.0000
agug	chr11:33025699-33025932(-)$1	233	56	60	12.0000
agug	chr2:113336991-113337197(-)$1	206	32	36	12.0000
agug	chr11:118706618-118706826(+)$1	208	64	68	12.0000
agug	chr7:103075335-103075575(-)$1	240	51	55	12.0000
AGUG	chr9:19378793-19378996(-)$1	203	98	102	12.0000
AGUG	chr5:64018231-64018453(-)$1	222	92	96	12.0000
agug	chr7:148638538-148638747(+)$1	209	51	55	12.0000
agug	chr1:118069905-118070146(+)$1	241	80	84	12.0000
agug	chr7:148638514-148638719(+)$1	205	75	79	12.0000
AGUG	chr1:185235592-185235853(+)$1	261	90	94	12.0000
AGUG	chr9:19378741-19378949(-)$1	208	51	55	12.0000
AGUG	chr12:112681130-112681368(-)$1	238	161	165	12.0000
AGUG	chr9:95032065-95032304(-)$1	239	66	70	12.0000
agug	chr16:489200-489417(-)$1	217	30	34	12.0000
agug	chr11:3684949-3685182(-)$1	233	83	87	12.0000
AGUG	chr2:206890280-206890519(+)$1	239	25	29	12.0000
agug	chr6:151619956-151620167(-)$1	211	114	118	12.0000
AGUG	chr15:101178525-101178771(+)$1	246	8	12	12.0000
agug	chr9:34194718-34194950(-)$1	232	60	64	12.0000
agug	chr19:40844860-40845089(-)$1	229	215	219	12.0000
AGUG	chr2:208552651-208552873(+)$1	222	185	189	12.0000
AGUG	chr17:79525012-79525262(-)$1	250	46	50	12.0000
agug	chr17:18965296-18965548(+)$1	252	114	118	12.0000
agug	chr13:23726628-23726866(-)$1	238	56	60	12.0000
agug	chr12:51333613-51333841(-)$1	228	42	46	12.0000
agug	chr4:122250125-122250358(-)$1	233	43	47	12.0000
AGUG	chr17:48773982-48774219(+)$1	237	17	21	12.0000
AGUG	chr1:47124264-47124510(-)$1	246	67	71	12.0000
AGUG	chr16:89023462-89023707(-)$1	245	106	110	12.0000
agug	chr15:40214888-40215120(-)$1	232	45	49	12.0000
agug	chr14:68083928-68084151(-)$1	223	3	7	12.0000
AGUG	chr2:208552673-208552884(+)$1	211	163	167	12.0000
agug	chr11:77243780-77244009(-)$1	229	12	16	12.0000
AGUG	chr1:47130827-47131030(-)$1	203	34	38	12.0000
agug	chr3:23315263-23315503(+)$1	240	44	48	12.0000
agug	chr17:41084842-41085056(-)$1	214	112	116	12.0000
AGUG	chr19:41119452-41119735(+)$1	283	132	136	12.0000
agug	chr9:113859512-113859738(-)$1	226	81	85	12.0000
AGUG	chr20:62597552-62597775(-)$1	223	126	130	12.0000
agug	chr12:100651362-100651648(-)$1	286	206	210	12.0000
agug	chr17:38547377-38547619(-)$1	242	157	161	12.0000
AGUG	chr12:112681168-112681377(-)$1	209	170	174	12.0000
agug	chr15:30965895-30966136(+)$1	241	27	31	12.0000
AGUG	chr1:147802375-147802625(+)$1	250	35	39	12.0000
agug	chr6:31746573-31746783(-)$1	210	111	115	12.0000
agug	chr17:38399383-38399605(+)$1	222	106	110	12.0000
agug	chr9:33830868-33831110(+)$1	242	117	121	12.0000
AGUG	chr15:28508036-28508317(-)$1	281	6	10	12.0000
agug	chr16:30465221-30465447(-)$1	226	39	43	12.0000
agug	chr1:28748967-28749199(-)$1	232	48	52	12.0000
agug	chr22:37409242-37409458(+)$1	216	34	38	12.0000
AGUG	chr12:111885229-111885448(+)$1	219	43	47	12.0000
agug	chrX:64905672-64905882(+)$1	210	36	40	12.0000
agug	chr7:6214757-6214974(-)$1	217	175	179	12.0000
AGUG	chr11:618790-619008(-)$1	218	148	152	12.0000
AGUG	chr4:140265329-140265568(+)$1	239	40	44	12.0000
AGUG	chr21:34826880-34827107(-)$1	227	193	197	12.0000
AGUG	chrX:65238678-65238880(+)$1	202	46	50	12.0000
AGUG	chr2:65061091-65061323(-)$1	232	6	10	12.0000
AGUG	chr9:80923350-80923576(+)$1	226	76	80	12.0000
AGUG	chr9:19378710-19378941(-)$1	231	43	47	12.0000
agug	chr1:185226969-185227180(-)$1	211	43	47	12.0000
AGUG	chr7:91831460-91831694(-)$1	234	2	6	12.0000
agug	chr18:12760710-12760914(+)$1	204	15	19	12.0000
agug	chr14:93863425-93863644(-)$1	219	79	83	12.0000
agug	chr1:52331241-52331474(+)$1	233	78	82	12.0000
AGUG	chr9:19378759-19378966(-)$1	207	68	72	12.0000
agug	chr15:64403562-64403782(-)$1	220	29	33	12.0000
AGUG	chr13:92003237-92003449(+)$1	212	91	95	12.0000
AGUG	chr8:48874574-48874819(+)$1	245	115	119	12.0000

#otherMatches

#Struct PSSM
dd22	chr6:32942411-32942625(+)$1	214	52	56	12.0000
IIII	chr15:69698750-69698998(+)$1	248	44	48	12.0000
ee:f	chr9:33352687-33352903(-)$1	216	39	43	12.0000
dddd	chr13:78197470-78197714(+)$1	244	9	13	12.0000
iiii	chr9:72926435-72926659(-)$1	224	57	61	12.0000
c[cc	chr9:19378796-19379003(-)$1	207	105	109	12.0000
====	chr17:41084835-41085042(-)$1	207	98	102	12.0000
hhhh	chr11:33025699-33025932(-)$1	233	56	60	12.0000
GGGG	chr2:113336991-113337197(-)$1	206	32	36	12.0000
gggg	chr11:118706618-118706826(+)$1	208	64	68	12.0000
""dd	chr7:103075335-103075575(-)$1	240	51	55	12.0000
JJJJ	chr9:19378793-19378996(-)$1	203	98	102	12.0000
eeeg	chr5:64018231-64018453(-)$1	222	92	96	12.0000
ffff	chr7:148638538-148638747(+)$1	209	51	55	12.0000
nggg	chr1:118069905-118070146(+)$1	241	80	84	12.0000
ffff	chr7:148638514-148638719(+)$1	205	75	79	12.0000
bb]c	chr1:185235592-185235853(+)$1	261	90	94	12.0000
JJJJ	chr9:19378741-19378949(-)$1	208	51	55	12.0000
dqqq	chr12:112681130-112681368(-)$1	238	161	165	12.0000
dddn	chr9:95032065-95032304(-)$1	239	66	70	12.0000
dddd	chr16:489200-489417(-)$1	217	30	34	12.0000
fff]	chr11:3684949-3685182(-)$1	233	83	87	12.0000
TTA{	chr2:206890280-206890519(+)$1	239	25	29	12.0000
gggd	chr6:151619956-151620167(-)$1	211	114	118	12.0000
bb[c	chr15:101178525-101178771(+)$1	246	8	12	12.0000
HHHH	chr9:34194718-34194950(-)$1	232	60	64	12.0000
oooo	chr19:40844860-40845089(-)$1	229	215	219	12.0000
ddd:	chr2:208552651-208552873(+)$1	222	185	189	12.0000
ffff	chr17:79525012-79525262(-)$1	250	46	50	12.0000
ff:=	chr17:18965296-18965548(+)$1	252	114	118	12.0000
"ccc	chr13:23726628-23726866(-)$1	238	56	60	12.0000
dd[g	chr12:51333613-51333841(-)$1	228	42	46	12.0000
DDDF	chr4:122250125-122250358(-)$1	233	43	47	12.0000
fffl	chr17:48773982-48774219(+)$1	237	17	21	12.0000
D{EE	chr1:47124264-47124510(-)$1	246	67	71	12.0000
bb""	chr16:89023462-89023707(-)$1	245	106	110	12.0000
dd[g	chr15:40214888-40215120(-)$1	232	45	49	12.0000
::::	chr14:68083928-68084151(-)$1	223	3	7	12.0000
ddd:	chr2:208552673-208552884(+)$1	211	163	167	12.0000
JJJJ	chr11:77243780-77244009(-)$1	229	12	16	12.0000
bccc	chr1:47130827-47131030(-)$1	203	34	38	12.0000
EEEF	chr3:23315263-23315503(+)$1	240	44	48	12.0000
====	chr17:41084842-41085056(-)$1	214	112	116	12.0000
::::	chr19:41119452-41119735(+)$1	283	132	136	12.0000
fff]	chr9:113859512-113859738(-)$1	226	81	85	12.0000
7eee	chr20:62597552-62597775(-)$1	223	126	130	12.0000
ddbb	chr12:100651362-100651648(-)$1	286	206	210	12.0000
ccll	chr17:38547377-38547619(-)$1	242	157	161	12.0000
d]a2	chr12:112681168-112681377(-)$1	209	170	174	12.0000
dddd	chr15:30965895-30966136(+)$1	241	27	31	12.0000
cc]b	chr1:147802375-147802625(+)$1	250	35	39	12.0000
eeee	chr6:31746573-31746783(-)$1	210	111	115	12.0000
iiii	chr17:38399383-38399605(+)$1	222	106	110	12.0000
#a!!	chr9:33830868-33831110(+)$1	242	117	121	12.0000
FFFf	chr15:28508036-28508317(-)$1	281	6	10	12.0000
cc[g	chr16:30465221-30465447(-)$1	226	39	43	12.0000
iiii	chr1:28748967-28749199(-)$1	232	48	52	12.0000
HHHH	chr22:37409242-37409458(+)$1	216	34	38	12.0000
:hhh	chr12:111885229-111885448(+)$1	219	43	47	12.0000
]ccc	chrX:64905672-64905882(+)$1	210	36	40	12.0000
EEEE	chr7:6214757-6214974(-)$1	217	175	179	12.0000
d!!g	chr11:618790-619008(-)$1	218	148	152	12.0000
::::	chr4:140265329-140265568(+)$1	239	40	44	12.0000
ZZZC	chr21:34826880-34827107(-)$1	227	193	197	12.0000
ceee	chrX:65238678-65238880(+)$1	202	46	50	12.0000
nnnd	chr2:65061091-65061323(-)$1	232	6	10	12.0000
d[bb	chr9:80923350-80923576(+)$1	226	76	80	12.0000
JJJJ	chr9:19378710-19378941(-)$1	231	43	47	12.0000
##dd	chr1:185226969-185227180(-)$1	211	43	47	12.0000
::::	chr7:91831460-91831694(-)$1	234	2	6	12.0000
CC{G	chr18:12760710-12760914(+)$1	204	15	19	12.0000
====	chr14:93863425-93863644(-)$1	219	79	83	12.0000
ffff	chr1:52331241-52331474(+)$1	233	78	82	12.0000
#ddd	chr9:19378759-19378966(-)$1	207	68	72	12.0000
IIII	chr15:64403562-64403782(-)$1	220	29	33	12.0000
====	chr13:92003237-92003449(+)$1	212	91	95	12.0000
{EEE	chr8:48874574-48874819(+)$1	245	115	119	12.0000

#DB
))..	chr6:32942411-32942625(+)$1	1	52	56	12.0000
((((	chr15:69698750-69698998(+)$1	1	44	48	12.0000
)).(	chr9:33352687-33352903(-)$1	1	39	43	12.0000
((((	chr13:78197470-78197714(+)$1	1	9	13	12.0000
((((	chr9:72926435-72926659(-)$1	1	57	61	12.0000
(.((	chr9:19378796-19379003(-)$1	1	105	109	12.0000
((((	chr17:41084835-41085042(-)$1	1	98	102	12.0000
((((	chr11:33025699-33025932(-)$1	1	56	60	12.0000
((((	chr2:113336991-113337197(-)$1	1	32	36	12.0000
((((	chr11:118706618-118706826(+)$1	1	64	68	12.0000
..((	chr7:103075335-103075575(-)$1	1	51	55	12.0000
((((	chr9:19378793-19378996(-)$1	1	98	102	12.0000
((((	chr5:64018231-64018453(-)$1	1	92	96	12.0000
((((	chr7:148638538-148638747(+)$1	1	51	55	12.0000
.)))	chr1:118069905-118070146(+)$1	1	80	84	12.0000
((((	chr7:148638514-148638719(+)$1	1	75	79	12.0000
)).)	chr1:185235592-185235853(+)$1	1	90	94	12.0000
((((	chr9:19378741-19378949(-)$1	1	51	55	12.0000
(...	chr12:112681130-112681368(-)$1	1	161	165	12.0000
(((.	chr9:95032065-95032304(-)$1	1	66	70	12.0000
((((	chr16:489200-489417(-)$1	1	30	34	12.0000
))).	chr11:3684949-3685182(-)$1	1	83	87	12.0000
..(.	chr2:206890280-206890519(+)$1	1	25	29	12.0000
((((	chr6:151619956-151620167(-)$1	1	114	118	12.0000
((.(	chr15:101178525-101178771(+)$1	1	8	12	12.0000
((((	chr9:34194718-34194950(-)$1	1	60	64	12.0000
....	chr19:40844860-40845089(-)$1	1	215	219	12.0000
))).	chr2:208552651-208552873(+)$1	1	185	189	12.0000
))))	chr17:79525012-79525262(-)$1	1	46	50	12.0000
)).(	chr17:18965296-18965548(+)$1	1	114	118	12.0000
.(((	chr13:23726628-23726866(-)$1	1	56	60	12.0000
((.(	chr12:51333613-51333841(-)$1	1	42	46	12.0000
((((	chr4:122250125-122250358(-)$1	1	43	47	12.0000
(((.	chr17:48773982-48774219(+)$1	1	17	21	12.0000
(.((	chr1:47124264-47124510(-)$1	1	67	71	12.0000
((..	chr16:89023462-89023707(-)$1	1	106	110	12.0000
((.(	chr15:40214888-40215120(-)$1	1	45	49	12.0000
....	chr14:68083928-68084151(-)$1	1	3	7	12.0000
))).	chr2:208552673-208552884(+)$1	1	163	167	12.0000
((((	chr11:77243780-77244009(-)$1	1	12	16	12.0000
))))	chr1:47130827-47131030(-)$1	1	34	38	12.0000
((((	chr3:23315263-23315503(+)$1	1	44	48	12.0000
((((	chr17:41084842-41085056(-)$1	1	112	116	12.0000
....	chr19:41119452-41119735(+)$1	1	132	136	12.0000
))).	chr9:113859512-113859738(-)$1	1	81	85	12.0000
.)))	chr20:62597552-62597775(-)$1	1	126	130	12.0000
((((	chr12:100651362-100651648(-)$1	1	206	210	12.0000
((..	chr17:38547377-38547619(-)$1	1	157	161	12.0000
).).	chr12:112681168-112681377(-)$1	1	170	174	12.0000
((((	chr15:30965895-30966136(+)$1	1	27	31	12.0000
)).)	chr1:147802375-147802625(+)$1	1	35	39	12.0000
((((	chr6:31746573-31746783(-)$1	1	111	115	12.0000
((((	chr17:38399383-38399605(+)$1	1	106	110	12.0000
.(..	chr9:33830868-33831110(+)$1	1	117	121	12.0000
((((	chr15:28508036-28508317(-)$1	1	6	10	12.0000
((.(	chr16:30465221-30465447(-)$1	1	39	43	12.0000
((((	chr1:28748967-28749199(-)$1	1	48	52	12.0000
((((	chr22:37409242-37409458(+)$1	1	34	38	12.0000
.(((	chr12:111885229-111885448(+)$1	1	43	47	12.0000
.)))	chrX:64905672-64905882(+)$1	1	36	40	12.0000
))))	chr7:6214757-6214974(-)$1	1	175	179	12.0000
(..(	chr11:618790-619008(-)$1	1	148	152	12.0000
....	chr4:140265329-140265568(+)$1	1	40	44	12.0000
...)	chr21:34826880-34827107(-)$1	1	193	197	12.0000
((((	chrX:65238678-65238880(+)$1	1	46	50	12.0000
...)	chr2:65061091-65061323(-)$1	1	6	10	12.0000
(.((	chr9:80923350-80923576(+)$1	1	76	80	12.0000
((((	chr9:19378710-19378941(-)$1	1	43	47	12.0000
..((	chr1:185226969-185227180(-)$1	1	43	47	12.0000
....	chr7:91831460-91831694(-)$1	1	2	6	12.0000
((.(	chr18:12760710-12760914(+)$1	1	15	19	12.0000
((((	chr14:93863425-93863644(-)$1	1	79	83	12.0000
((((	chr1:52331241-52331474(+)$1	1	78	82	12.0000
.(((	chr9:19378759-19378966(-)$1	1	68	72	12.0000
((((	chr15:64403562-64403782(-)$1	1	29	33	12.0000
((((	chr13:92003237-92003449(+)$1	1	91	95	12.0000
.(((	chr8:48874574-48874819(+)$1	1	115	119	12.0000

#PSSM
a : 0.54	A : 0.45	
g : 0.54	G : 0.45	
u : 0.54	U : 0.45	
g : 0.54	G : 0.45	

#score	924.0000000000001
#seq	77
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_transcript_m3_run2.nuc.txt

#NT
UUCCGUU	chr14:102247098-102247353(+)$1	255	19	26	12.6949
UUUCUUU	chr1:246487748-246488036(-)$1	288	216	223	14.0508
UGCCUUU	chr21:15858541-15858838(-)$1	297	14	21	12.1864
cuccuuu	chr19:19644295-19644575(+)$1	280	42	49	12.5254
uucccuu	chr3:47341552-47341849(+)$1	297	28	35	13.2033
uucuuuu	chr1:113646205-113646482(+)$1	277	267	274	12.7796
uuucuuu	chr8:141639824-141640055(-)$1	231	105	112	14.0508
UUACUUU	chr6:10902255-10902534(+)$1	279	190	197	13.4576
uucuuuu	chr19:36722026-36722278(+)$1	252	92	99	12.7796
uucuuuu	chr18:3008806-3009151(-)$1	345	43	50	12.7796
uuucuuu	chr9:37189084-37189344(+)$1	260	26	33	14.0508
uuccuuc	chr7:6429643-6429925(+)$1	282	34	41	12.6101
UUCCUUU	chr2:42537356-42537646(+)$1	290	48	55	16.9322
UUCCCUU	chr19:10917493-10917717(+)$1	224	11	18	13.2033
uuccuuu	chr2:86777360-86777670(-)$1	310	40	47	16.9322
uuccucu	chr3:38176627-38176906(-)$1	279	82	89	13.0338
uuccucu	chr17:79223087-79223410(-)$1	323	71	78	13.0338
uuacuuu	chr13:113377020-113377272(+)$1	252	222	229	13.4576
uuccuuu	chr2:3340406-3340657(-)$1	251	41	48	16.9322
UUCCUUu	chr11:14747056-14747355(+)$1	299	115	122	16.9322
uuccuuu	chr6:34910620-34910919(+)$1	299	37	44	16.9322
uuccuuc	chr1:180628457-180628773(+)$1	316	3	10	12.6101
uuccuuc	chr9:133625750-133626026(+)$1	276	9	16	12.6101
uuccucu	chr3:10361290-10361574(-)$1	284	0	7	13.0338
UUCAUUU	chr22:22010698-22010965(+)$1	267	92	99	12.7796
UUCCCUU	chr12:132579270-132579505(+)$1	235	31	38	13.2033
Uuccucu	chr3:60537331-60537595(-)$1	264	256	263	13.0338
uuccuuu	chr2:102450580-102450941(+)$1	361	35	42	16.9322
UUCCUUU	chr2:102375636-102375919(+)$1	283	75	82	16.9322
cuccuuu	chr7:25001781-25002075(-)$1	294	79	86	12.5254
AUCCUUU	chr6:126312593-126312823(+)$1	230	222	229	12.4406
UUCCUUU	chr19:10864001-10864318(+)$1	317	137	144	16.9322
uugcuuu	chr4:39726705-39727001(+)$1	296	73	80	13.3728
uuccucu	chr9:34220081-34220328(+)$1	247	58	65	13.0338
UUACUUU	chr19:59002469-59002752(-)$1	283	106	113	13.4576
uuuCUuu	chr18:60414587-60414925(+)$1	338	98	105	14.0508
UUUCUUU	chr16:23994467-23994682(+)$1	215	61	68	14.0508
UUCGUUU	chr4:77977142-77977350(-)$1	208	13	20	12.6101
guccuuu	chr5:162841152-162841414(-)$1	262	153	160	12.5254
UACCUUU	chr19:10579340-10579613(+)$1	273	20	27	12.1864
UUCCCUU	chr12:53846038-53846255(+)$1	217	136	143	13.2033
uuccuuu	chr7:916775-917010(+)$1	235	97	104	16.9322
UUCAUUU	chr5:43128284-43128543(+)$1	259	83	90	12.7796
uucccuu	chr1:227179468-227179769(-)$1	301	119	126	13.2033
uuccuuu	chrX:56592317-56592543(+)$1	226	123	130	16.9322
uuucuuu	chr1:235576469-235576760(+)$1	291	202	209	14.0508
uuccucu	chr1:29316845-29317055(+)$1	210	24	31	13.0338
uugcuuu	chr16:28968776-28969055(+)$1	279	217	224	13.3728
uuccuuc	chr1:97212375-97212705(+)$1	330	96	103	12.6101
UUUCUUU	chr16:74699807-74700109(-)$1	302	55	62	14.0508
uuucuuu	chr19:21924633-21924891(-)$1	258	87	94	14.0508
UUCAUUU	chr16:23994636-23994871(+)$1	235	100	107	12.7796
uucccuu	chr18:20990952-20991247(-)$1	295	9	16	13.2033
uuccuuu	chr10:34751604-34751905(-)$1	301	124	131	16.9322
guccuuu	chr19:10846546-10846811(+)$1	265	66	73	12.5254
UUCCUAU	chr13:99126405-99126668(-)$1	263	99	106	12.6101
uuucuuu	chr1:26592629-26592904(+)$1	275	88	95	14.0508
uuucuuu	chr19:39458339-39458634(-)$1	295	24	31	14.0508

#otherMatches

#Struct PSSM
WWWWWWW	chr19:57742903-57743238(+)$1	335	112	119	13.2033
ffqqqqq	chr14:102247098-102247353(+)$1	255	19	26	12.6949
!!ccc!!	chr1:246487748-246488036(-)$1	288	216	223	14.0508
gggggg!	chr21:15858541-15858838(-)$1	297	14	21	12.1864
HHHHHHH	chr19:19644295-19644575(+)$1	280	42	49	12.5254
:::::::	chr3:47341552-47341849(+)$1	297	28	35	13.2033
ddd4444	chr1:113646205-113646482(+)$1	277	267	274	12.7796
^^^^^^^	chr8:141639824-141640055(-)$1	231	105	112	14.0508
ppppppp	chr6:10902255-10902534(+)$1	279	190	197	13.4576
xxxxeee	chr19:36722026-36722278(+)$1	252	92	99	12.7796
VVVDDDD	chr18:3008806-3009151(-)$1	345	43	50	12.7796
(((((((	chr9:37189084-37189344(+)$1	260	26	33	14.0508
:::::::	chr7:6429643-6429925(+)$1	282	34	41	12.6101
pccc777	chr2:42537356-42537646(+)$1	290	48	55	16.9322
:::DDDD	chr19:10917493-10917717(+)$1	224	11	18	13.2033
!!bbppp	chr2:86777360-86777670(-)$1	310	40	47	16.9322
EEEEEBB	chr3:38176627-38176906(-)$1	279	82	89	13.0338
:::::::	chr17:79223087-79223410(-)$1	323	71	78	13.0338
=======	chr13:113377020-113377272(+)$1	252	222	229	13.4576
:::::::	chr2:3340406-3340657(-)$1	251	41	48	16.9322
:::::::	chr11:14747056-14747355(+)$1	299	115	122	16.9322
:::::::	chr6:34910620-34910919(+)$1	299	37	44	16.9322
:::::::	chr1:180628457-180628773(+)$1	316	3	10	12.6101
BMMMMDD	chr9:133625750-133626026(+)$1	276	9	16	12.6101
:::::::	chr3:10361290-10361574(-)$1	284	0	7	13.0338
lllffff	chr22:22010698-22010965(+)$1	267	92	99	12.7796
DDD{CCC	chr12:132579270-132579505(+)$1	235	31	38	13.2033
E::::::	chr3:60537331-60537595(-)$1	264	256	263	13.0338
:::::::	chr2:102450580-102450941(+)$1	361	35	42	16.9322
33ccc22	chr2:102375636-102375919(+)$1	283	75	82	16.9322
:::::::	chr7:25001781-25002075(-)$1	294	79	86	12.5254
:::::::	chr6:126312593-126312823(+)$1	230	222	229	12.4406
:::::::	chr19:10864001-10864318(+)$1	317	137	144	16.9322
ff[ccco	chr4:39726705-39727001(+)$1	296	73	80	13.3728
::::::B	chr9:34220081-34220328(+)$1	247	58	65	13.0338
ffff:::	chr19:59002469-59002752(-)$1	283	106	113	13.4576
:::::::	chr18:60414587-60414925(+)$1	338	98	105	14.0508
oeeeeei	chr16:23994467-23994682(+)$1	215	61	68	14.0508
CCCdddd	chr4:77977142-77977350(-)$1	208	13	20	12.6101
=="""cc	chr5:162841152-162841414(-)$1	262	153	160	12.5254
::::::f	chr19:10579340-10579613(+)$1	273	20	27	12.1864
^^^^^^^	chr12:53846038-53846255(+)$1	217	136	143	13.2033
:::::::	chr7:916775-917010(+)$1	235	97	104	16.9322
FFFFFhh	chr5:43128284-43128543(+)$1	259	83	90	12.7796
======'	chr1:227179468-227179769(-)$1	301	119	126	13.2033
^^^^^^^	chrX:56592317-56592543(+)$1	226	123	130	16.9322
DDD::::	chr1:235576469-235576760(+)$1	291	202	209	14.0508
:::::::	chr1:29316845-29317055(+)$1	210	24	31	13.0338
iiiiiii	chr16:28968776-28969055(+)$1	279	217	224	13.3728
^^^^^^^	chr1:97212375-97212705(+)$1	330	96	103	12.6101
:::::::	chr16:74699807-74700109(-)$1	302	55	62	14.0508
mmmmfff	chr19:21924633-21924891(-)$1	258	87	94	14.0508
:ffffff	chr16:23994636-23994871(+)$1	235	100	107	12.7796
:::::::	chr18:20990952-20991247(-)$1	295	9	16	13.2033
:::::::	chr10:34751604-34751905(-)$1	301	124	131	16.9322
:::::::	chr19:10846546-10846811(+)$1	265	66	73	12.5254
iii!!dd	chr13:99126405-99126668(-)$1	263	99	106	12.6101
fff]ddd	chr1:26592629-26592904(+)$1	275	88	95	14.0508
:::====	chr19:39458339-39458634(-)$1	295	24	31	14.0508

#DB
.......	chr19:57742903-57743238(+)$1	1	112	119	13.2033
((.....	chr14:102247098-102247353(+)$1	1	19	26	12.6949
..(((..	chr1:246487748-246488036(-)$1	1	216	223	14.0508
((((((.	chr21:15858541-15858838(-)$1	1	14	21	12.1864
(((((((	chr19:19644295-19644575(+)$1	1	42	49	12.5254
.......	chr3:47341552-47341849(+)$1	1	28	35	13.2033
)))....	chr1:113646205-113646482(+)$1	1	267	274	12.7796
.......	chr8:141639824-141640055(-)$1	1	105	112	14.0508
.......	chr6:10902255-10902534(+)$1	1	190	197	13.4576
....)))	chr19:36722026-36722278(+)$1	1	92	99	12.7796
...((((	chr18:3008806-3009151(-)$1	1	43	50	12.7796
.......	chr9:37189084-37189344(+)$1	1	26	33	14.0508
.......	chr7:6429643-6429925(+)$1	1	34	41	12.6101
.)))...	chr2:42537356-42537646(+)$1	1	48	55	16.9322
...((((	chr19:10917493-10917717(+)$1	1	11	18	13.2033
..((...	chr2:86777360-86777670(-)$1	1	40	47	16.9322
(((((((	chr3:38176627-38176906(-)$1	1	82	89	13.0338
.......	chr17:79223087-79223410(-)$1	1	71	78	13.0338
)))))))	chr13:113377020-113377272(+)$1	1	222	229	13.4576
.......	chr2:3340406-3340657(-)$1	1	41	48	16.9322
.......	chr11:14747056-14747355(+)$1	1	115	122	16.9322
.......	chr6:34910620-34910919(+)$1	1	37	44	16.9322
.......	chr1:180628457-180628773(+)$1	1	3	10	12.6101
(....((	chr9:133625750-133626026(+)$1	1	9	16	12.6101
.......	chr3:10361290-10361574(-)$1	1	0	7	13.0338
...))))	chr22:22010698-22010965(+)$1	1	92	99	12.7796
(((.(((	chr12:132579270-132579505(+)$1	1	31	38	13.2033
)......	chr3:60537331-60537595(-)$1	1	256	263	13.0338
.......	chr2:102450580-102450941(+)$1	1	35	42	16.9322
..)))..	chr2:102375636-102375919(+)$1	1	75	82	16.9322
.......	chr7:25001781-25002075(-)$1	1	79	86	12.5254
.......	chr6:126312593-126312823(+)$1	1	222	229	12.4406
.......	chr19:10864001-10864318(+)$1	1	137	144	16.9322
((.(((.	chr4:39726705-39727001(+)$1	1	73	80	13.3728
......(	chr9:34220081-34220328(+)$1	1	58	65	13.0338
))))...	chr19:59002469-59002752(-)$1	1	106	113	13.4576
.......	chr18:60414587-60414925(+)$1	1	98	105	14.0508
.))))))	chr16:23994467-23994682(+)$1	1	61	68	14.0508
(((((((	chr4:77977142-77977350(-)$1	1	13	20	12.6101
((...((	chr5:162841152-162841414(-)$1	1	153	160	12.5254
......(	chr19:10579340-10579613(+)$1	1	20	27	12.1864
.......	chr12:53846038-53846255(+)$1	1	136	143	13.2033
.......	chr7:916775-917010(+)$1	1	97	104	16.9322
(((((((	chr5:43128284-43128543(+)$1	1	83	90	12.7796
((((((.	chr1:227179468-227179769(-)$1	1	119	126	13.2033
.......	chrX:56592317-56592543(+)$1	1	123	130	16.9322
(((....	chr1:235576469-235576760(+)$1	1	202	209	14.0508
.......	chr1:29316845-29317055(+)$1	1	24	31	13.0338
)))))))	chr16:28968776-28969055(+)$1	1	217	224	13.3728
.......	chr1:97212375-97212705(+)$1	1	96	103	12.6101
.......	chr16:74699807-74700109(-)$1	1	55	62	14.0508
....)))	chr19:21924633-21924891(-)$1	1	87	94	14.0508
.((((((	chr16:23994636-23994871(+)$1	1	100	107	12.7796
.......	chr18:20990952-20991247(-)$1	1	9	16	13.2033
.......	chr10:34751604-34751905(-)$1	1	124	131	16.9322
.......	chr19:10846546-10846811(+)$1	1	66	73	12.5254
(((..((	chr13:99126405-99126668(-)$1	1	99	106	12.6101
))).)))	chr1:26592629-26592904(+)$1	1	88	95	14.0508
...((((	chr19:39458339-39458634(-)$1	1	24	31	14.0508

#PSSM
u : 0.55	U : 0.35	c : 0.03	g : 0.03	A : 0.01	
u : 0.64	U : 0.32	G : 0.01	A : 0.01	
c : 0.47	C : 0.27	u : 0.11	U : 0.05	A : 0.03	g : 0.03	a : 0.01	
c : 0.57	C : 0.30	u : 0.05	A : 0.05	G : 0.01	
u : 0.55	U : 0.30	c : 0.06	C : 0.05	G : 0.01	
u : 0.54	U : 0.33	c : 0.10	A : 0.01	
u : 0.59	U : 0.33	c : 0.06	

#score	816.4576271186446
#seq	59
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_UTR_m1_run1.nuc.txt

#NT
GGGAAGGG	chr17:79988815-79989107(+)$1	292	41	49	15.5068
GGGGAGGG	chr12:76477543-76477831(-)$1	288	16	24	20.0958
GGGGAGGC	chr11:118965236-118965513(-)$1	277	171	179	15.5753
GGGGUGGG	chr7:5569512-5569746(-)$1	234	98	106	16.6712
gcggaggg	chr11:18034129-18034427(-)$1	298	70	78	16.1917
GGGUAGGG	chr17:74380818-74381068(+)$1	250	67	75	15.4383
gggguggg	chr16:447636-447883(+)$1	247	16	24	16.6712
GGGGCGGG	chr19:2270133-2270422(+)$1	289	92	100	16.8082
GGGGUGGG	chr16:2579714-2579981(+)$1	267	99	107	16.6712
GGGGAGGA	chr3:49057803-49058052(-)$1	249	155	163	15.6438
UGGGAGGG	chr7:5569350-5569605(-)$1	255	97	105	15.8493
GGGGCGGG	chr9:97848117-97848351(+)$1	234	24	32	16.8082
GAGGAGGG	chr20:361884-362138(+)$1	254	232	240	16.1917
GGGCAGGG	chr22:46508540-46508795(+)$1	255	216	224	15.4383
GGGGACGG	chr11:61582539-61582782(-)$1	243	85	93	15.5753
GGGGUGGG	chr4:2935780-2936125(-)$1	345	178	186	16.6712
GAGGAGGG	chr6:30294388-30294679(-)$1	291	110	118	16.1917
ggggaggg	chr2:191513649-191513904(+)$1	255	78	86	20.0958
GGGGAAGG	chr3:49050094-49050362(+)$1	268	109	117	15.6438
gcggaggg	chr6:170123967-170124242(-)$1	275	86	94	16.1917
GGGGAGGC	chr10:88516563-88516873(+)$1	310	157	165	15.5753
GGGGUGGG	chr10:21785898-21786135(-)$1	237	32	40	16.6712
ggggcggg	chr2:27435069-27435327(+)$1	258	111	119	16.8082
CGGGAGGG	chr1:33283229-33283505(+)$1	276	69	77	15.8493
GGGGAGGG	chr19:41770840-41771087(+)$1	247	67	75	20.0958
GGGGAGGG	chr7:150777600-150777857(-)$1	257	103	111	20.0958
GGGGAGGG	chr17:7476478-7476721(+)$1	243	81	89	20.0958
GAGGAGGG	chr7:77166718-77166983(+)$1	265	5	13	16.1917
GGGGCGGG	chr17:79860502-79860766(-)$1	264	102	110	16.8082
GGGGACGG	chr17:80197785-80198011(+)$1	226	89	97	15.5753
GGGAAGGG	chr19:46142219-46142514(-)$1	295	105	113	15.5068
GGGGCGGG	chr9:97848104-97848317(+)$1	213	37	45	16.8082
CGGGAGGG	chr2:242707714-242707989(+)$1	275	217	225	15.8493
GGGGUGGG	chr14:54421091-54421352(-)$1	261	73	81	16.6712
GGGGAGAG	chr2:20549798-20550128(-)$1	330	121	129	15.9178
GGGGAGAG	chr2:61405213-61405439(+)$1	226	36	44	15.9178
GGGGAGAG	chr22:41487714-41487983(+)$1	269	97	105	15.9178
ggggaggg	chr2:242254384-242254628(-)$1	244	56	64	20.0958
GGGGAGAG	chr22:41487787-41488063(+)$1	276	24	32	15.9178
GUGGAGGG	chr12:62997066-62997288(+)$1	222	95	103	16.1917
GGGGAGGG	chr9:139743352-139743627(+)$1	275	64	72	20.0958
gaggaggg	chr1:36789188-36789463(+)$1	275	55	63	16.1917
GGGGAGGG	chr20:57467338-57467615(+)$1	277	242	250	20.0958
GUGGAGGG	chr12:62997101-62997376(+)$1	275	60	68	16.1917
gcggaggg	chr19:34287185-34287454(+)$1	269	10	18	16.1917
ggggaggg	chr19:42788119-42788373(+)$1	254	68	76	20.0958
GCGGAGGG	chr17:7082221-7082570(-)$1	349	110	118	16.1917
UGGGAGGG	chr12:19592491-19592784(+)$1	293	61	69	15.8493
AGGGAGGG	chr19:40785076-40785332(-)$1	256	84	92	15.7808
GGGGAGGG	chr14:32546366-32546621(+)$1	255	17	25	20.0958
AGGGAGGG	chr16:70696327-70696570(-)$1	243	30	38	15.7808
GGGGAAGG	chr17:7477142-7477408(+)$1	266	14	22	15.6438
ggggcggg	chr13:113863734-113864008(+)$1	274	90	98	16.8082
GUGGAGGG	chr8:144676551-144676794(-)$1	243	52	60	16.1917
GGGGAGGA	chr3:49057852-49058091(-)$1	239	194	202	15.6438
GGGGAGCG	chr1:90308941-90309197(+)$1	256	114	122	15.7123
GGGGAGGG	chr6:32938570-32938797(+)$1	227	13	21	20.0958
GGGGAGGG	chr3:184044979-184045233(+)$1	254	92	100	20.0958
GGGGCGGG	chr3:184080669-184080945(+)$1	276	110	118	16.8082
GGGGAGGG	chr6:32938734-32939010(+)$1	276	154	162	20.0958
CGGGAGGG	chr3:184079613-184079862(+)$1	249	9	17	15.8493
UGGGAGGG	chr17:7082186-7082421(-)$1	235	34	42	15.8493
ggggcggg	chr17:36955634-36955874(-)$1	240	5	13	16.8082
GUGGAGGG	chr12:62997004-62997266(+)$1	262	157	165	16.1917
GGGGAAGG	chr3:49050193-49050494(+)$1	301	10	18	15.6438
GGGGAGAG	chr20:62572741-62572967(-)$1	226	18	26	15.9178
GGGGAGCG	chr1:2122104-2122376(-)$1	272	101	109	15.7123
GGGGUGGG	chr5:139063209-139063474(+)$1	265	118	126	16.6712
GGGGAGGG	chr1:90308863-90309141(+)$1	278	32	40	20.0958
GGGGCGGG	chr19:42758625-42758927(-)$1	302	144	152	16.8082
GGGGAGGG	chr1:205418898-205419147(-)$1	249	5	13	20.0958
GGGGAGGA	chr20:62572812-62573062(-)$1	250	65	73	15.6438

#otherMatches

#Struct PSSM
B{BB{BBB	chr10:102759108-102759363(+)$1	255	116	124	20.0958
bb!!cccm	chr17:79988815-79989107(+)$1	292	41	49	15.5068
JJJJJJJJ	chr12:76477543-76477831(-)$1	288	16	24	20.0958
====]bb]	chr11:118965236-118965513(-)$1	277	171	179	15.5753
nbb]dddd	chr7:5569512-5569746(-)$1	234	98	106	16.6712
2dddd555	chr11:18034129-18034427(-)$1	298	70	78	16.1917
eee]cccf	chr17:74380818-74381068(+)$1	250	67	75	15.4383
qqqqqqqq	chr16:447636-447883(+)$1	247	16	24	16.6712
:a!!bb[b	chr19:2270133-2270422(+)$1	289	92	100	16.8082
HHHHHCCC	chr16:2579714-2579981(+)$1	267	99	107	16.6712
ffffccc3	chr3:49057803-49058052(-)$1	249	155	163	15.6438
qqqqqccc	chr7:5569350-5569605(-)$1	255	97	105	15.8493
HHHHHHHH	chr9:97848117-97848351(+)$1	234	24	32	16.8082
nnnndddd	chr20:361884-362138(+)$1	254	232	240	16.1917
EEE}DDDD	chr22:46508540-46508795(+)$1	255	216	224	15.4383
gggg[eee	chr11:61582539-61582782(-)$1	243	85	93	15.5753
DDDBBEEE	chr4:2935780-2936125(-)$1	345	178	186	16.6712
{BBKKEEE	chr6:30294388-30294679(-)$1	291	110	118	16.1917
h[bb[bb[	chr2:191513649-191513904(+)$1	255	78	86	20.0958
ggggg###	chr3:49050094-49050362(+)$1	268	109	117	15.6438
bb333fff	chr6:170123967-170124242(-)$1	275	86	94	16.1917
FFFFKKCC	chr10:88516563-88516873(+)$1	310	157	165	15.5753
mmgggggg	chr10:21785898-21786135(-)$1	237	32	40	16.6712
IIIIIIID	chr2:27435069-27435327(+)$1	258	111	119	16.8082
{CCCFFFF	chr1:33283229-33283505(+)$1	276	69	77	15.8493
gga22ccc	chr19:41770840-41771087(+)$1	247	67	75	20.0958
ggoooooo	chr7:150777600-150777857(-)$1	257	103	111	20.0958
ooa]eeee	chr17:7476478-7476721(+)$1	243	81	89	20.0958
D{GGGGGG	chr7:77166718-77166983(+)$1	265	5	13	16.1917
gggggnnn	chr17:79860502-79860766(-)$1	264	102	110	16.8082
JJJJJJJJ	chr17:80197785-80198011(+)$1	226	89	97	15.5753
eeee[aff	chr19:46142219-46142514(-)$1	295	105	113	15.5068
HHHHHHHH	chr9:97848104-97848317(+)$1	213	37	45	16.8082
mmbb:===	chr2:242707714-242707989(+)$1	275	217	225	15.8493
::DDDD{J	chr14:54421091-54421352(-)$1	261	73	81	16.6712
ggggggg]	chr2:20549798-20550128(-)$1	330	121	129	15.9178
====]ddd	chr2:61405213-61405439(+)$1	226	36	44	15.9178
bb::::::	chr22:41487714-41487983(+)$1	269	97	105	15.9178
mccc22ee	chr2:242254384-242254628(-)$1	244	56	64	20.0958
vvvvvvvv	chr22:41487787-41488063(+)$1	276	24	32	15.9178
========	chr12:62997066-62997288(+)$1	222	95	103	16.1917
FFFFBBKK	chr9:139743352-139743627(+)$1	275	64	72	20.0958
rrgggggg	chr1:36789188-36789463(+)$1	275	55	63	16.1917
uuuuuuuu	chr20:57467338-57467615(+)$1	277	242	250	20.0958
========	chr12:62997101-62997376(+)$1	275	60	68	16.1917
GGGG:ccc	chr19:34287185-34287454(+)$1	269	10	18	16.1917
f[ccc[cc	chr19:42788119-42788373(+)$1	254	68	76	20.0958
]a]bb555	chr17:7082221-7082570(-)$1	349	110	118	16.1917
[ccc[ggg	chr12:19592491-19592784(+)$1	293	61	69	15.8493
22a:::::	chr19:40785076-40785332(-)$1	256	84	92	15.7808
IILLLBB{	chr14:32546366-32546621(+)$1	255	17	25	20.0958
3ccc]ccc	chr16:70696327-70696570(-)$1	243	30	38	15.7808
ffff[ddd	chr17:7477142-7477408(+)$1	266	14	22	15.6438
]ccc::DD	chr13:113863734-113864008(+)$1	274	90	98	16.8082
{FFFFFFd	chr8:144676551-144676794(-)$1	243	52	60	16.1917
EEEEE}BB	chr3:49057852-49058091(-)$1	239	194	202	15.6438
iiii!!ee	chr1:90308941-90309197(+)$1	256	114	122	15.7123
HHHHHfff	chr6:32938570-32938797(+)$1	227	13	21	20.0958
b333cccb	chr3:184044979-184045233(+)$1	254	92	100	20.0958
hhhhhhhm	chr3:184080669-184080945(+)$1	276	110	118	16.8082
}BBeeeee	chr6:32938734-32939010(+)$1	276	154	162	20.0958
BBJJJJJJ	chr3:184079613-184079862(+)$1	249	9	17	15.8493
gggggg^^	chr17:7082186-7082421(-)$1	235	34	42	15.8493
dllldddd	chr17:36955634-36955874(-)$1	240	5	13	16.8082
========	chr12:62997004-62997266(+)$1	262	157	165	16.1917
ggggg###	chr3:49050193-49050494(+)$1	301	10	18	15.6438
DDD{FFFF	chr20:62572741-62572967(-)$1	226	18	26	15.9178
33ccc]a]	chr1:2122104-2122376(-)$1	272	101	109	15.7123
bccc[ggg	chr5:139063209-139063474(+)$1	265	118	126	16.6712
:FFFFFFD	chr1:90308863-90309141(+)$1	278	32	40	20.0958
:ggggggg	chr19:42758625-42758927(-)$1	302	144	152	16.8082
DDDeeeee	chr1:205418898-205419147(-)$1	249	5	13	20.0958
hhhh!!dd	chr20:62572812-62573062(-)$1	250	65	73	15.6438

#DB
(.((.(((	chr10:102759108-102759363(+)$1	1	116	124	20.0958
((..(((.	chr17:79988815-79989107(+)$1	1	41	49	15.5068
((((((((	chr12:76477543-76477831(-)$1	1	16	24	20.0958
)))).)).	chr11:118965236-118965513(-)$1	1	171	179	15.5753
.)).))))	chr7:5569512-5569746(-)$1	1	98	106	16.6712
.))))...	chr11:18034129-18034427(-)$1	1	70	78	16.1917
))).))))	chr17:74380818-74381068(+)$1	1	67	75	15.4383
........	chr16:447636-447883(+)$1	1	16	24	16.6712
.(..((.(	chr19:2270133-2270422(+)$1	1	92	100	16.8082
((((((((	chr16:2579714-2579981(+)$1	1	99	107	16.6712
))))))).	chr3:49057803-49058052(-)$1	1	155	163	15.6438
.....)))	chr7:5569350-5569605(-)$1	1	97	105	15.8493
((((((((	chr9:97848117-97848351(+)$1	1	24	32	16.8082
....))))	chr20:361884-362138(+)$1	1	232	240	16.1917
))).))))	chr22:46508540-46508795(+)$1	1	216	224	15.4383
((((.(((	chr11:61582539-61582782(-)$1	1	85	93	15.5753
((((((((	chr4:2935780-2936125(-)$1	1	178	186	16.6712
.((..(((	chr6:30294388-30294679(-)$1	1	110	118	16.1917
(.((.((.	chr2:191513649-191513904(+)$1	1	78	86	20.0958
(((((...	chr3:49050094-49050362(+)$1	1	109	117	15.6438
))...)))	chr6:170123967-170124242(-)$1	1	86	94	16.1917
((((..((	chr10:88516563-88516873(+)$1	1	157	165	15.5753
..))))))	chr10:21785898-21786135(-)$1	1	32	40	16.6712
((((((((	chr2:27435069-27435327(+)$1	1	111	119	16.8082
.(((((((	chr1:33283229-33283505(+)$1	1	69	77	15.8493
)))..)))	chr19:41770840-41771087(+)$1	1	67	75	20.0958
((......	chr7:150777600-150777857(-)$1	1	103	111	20.0958
..).))))	chr17:7476478-7476721(+)$1	1	81	89	20.0958
(.((((((	chr7:77166718-77166983(+)$1	1	5	13	16.1917
(((((...	chr17:79860502-79860766(-)$1	1	102	110	16.8082
((((((((	chr17:80197785-80198011(+)$1	1	89	97	15.5753
((((.(((	chr19:46142219-46142514(-)$1	1	105	113	15.5068
((((((((	chr9:97848104-97848317(+)$1	1	37	45	16.8082
..)).(((	chr2:242707714-242707989(+)$1	1	217	225	15.8493
..((((.(	chr14:54421091-54421352(-)$1	1	73	81	16.6712
))))))).	chr2:20549798-20550128(-)$1	1	121	129	15.9178
)))).)))	chr2:61405213-61405439(+)$1	1	36	44	15.9178
))......	chr22:41487714-41487983(+)$1	1	97	105	15.9178
.)))..))	chr2:242254384-242254628(-)$1	1	56	64	20.0958
........	chr22:41487787-41488063(+)$1	1	24	32	15.9178
((((((((	chr12:62997066-62997288(+)$1	1	95	103	16.1917
((((((..	chr9:139743352-139743627(+)$1	1	64	72	20.0958
..))))))	chr1:36789188-36789463(+)$1	1	55	63	16.1917
........	chr20:57467338-57467615(+)$1	1	242	250	20.0958
((((((((	chr12:62997101-62997376(+)$1	1	60	68	16.1917
((((.(((	chr19:34287185-34287454(+)$1	1	10	18	16.1917
(.(((.((	chr19:42788119-42788373(+)$1	1	68	76	20.0958
.).))...	chr17:7082221-7082570(-)$1	1	110	118	16.1917
.(((.(((	chr12:19592491-19592784(+)$1	1	61	69	15.8493
..).....	chr19:40785076-40785332(-)$1	1	84	92	15.7808
((...((.	chr14:32546366-32546621(+)$1	1	17	25	20.0958
.))).)))	chr16:70696327-70696570(-)$1	1	30	38	15.7808
((((.(((	chr17:7477142-7477408(+)$1	1	14	22	15.6438
.)))..))	chr13:113863734-113864008(+)$1	1	90	98	16.8082
.(((((((	chr8:144676551-144676794(-)$1	1	52	60	16.1917
))))).))	chr3:49057852-49058091(-)$1	1	194	202	15.6438
((((..((	chr1:90308941-90309197(+)$1	1	114	122	15.7123
((((((((	chr6:32938570-32938797(+)$1	1	13	21	20.0958
)...))))	chr3:184044979-184045233(+)$1	1	92	100	20.0958
(((((((.	chr3:184080669-184080945(+)$1	1	110	118	16.8082
.))(((((	chr6:32938734-32939010(+)$1	1	154	162	20.0958
((((((((	chr3:184079613-184079862(+)$1	1	9	17	15.8493
((((((..	chr17:7082186-7082421(-)$1	1	34	42	15.8493
(...))))	chr17:36955634-36955874(-)$1	1	5	13	16.8082
((((((((	chr12:62997004-62997266(+)$1	1	157	165	16.1917
(((((...	chr3:49050193-49050494(+)$1	1	10	18	15.6438
(((.((((	chr20:62572741-62572967(-)$1	1	18	26	15.9178
..))).).	chr1:2122104-2122376(-)$1	1	101	109	15.7123
)(((.(((	chr5:139063209-139063474(+)$1	1	118	126	16.6712
.(((((((	chr1:90308863-90309141(+)$1	1	32	40	20.0958
.(((((((	chr19:42758625-42758927(-)$1	1	144	152	16.8082
((((((((	chr1:205418898-205419147(-)$1	1	5	13	20.0958
((((..((	chr20:62572812-62573062(-)$1	1	65	73	15.6438

#PSSM
G : 0.73	g : 0.15	U : 0.04	C : 0.04	A : 0.02	
G : 0.73	g : 0.09	U : 0.05	c : 0.04	A : 0.04	a : 0.01	C : 0.01	
G : 0.84	g : 0.15	
G : 0.79	g : 0.15	A : 0.02	U : 0.01	C : 0.01	
A : 0.68	a : 0.09	U : 0.08	C : 0.08	c : 0.04	u : 0.01	
G : 0.76	g : 0.16	A : 0.04	C : 0.02	
G : 0.73	g : 0.16	A : 0.06	C : 0.02	
G : 0.76	g : 0.16	A : 0.04	C : 0.02	

#score	1239.5342465753445
#seq	73
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_CDS_m3_run2.nuc.txt

#NT
CUG	chr4:24572250-24572528(-)$1	278	117	120	9.0000
CUG	chr16:47345103-47345393(-)$1	290	45	48	9.0000
CUG	chrX:70598094-70598346(+)$1	252	6	9	9.0000
CUG	chr17:16024352-16024680(-)$1	328	144	147	9.0000
CUG	chr21:47775298-47775553(+)$1	255	11	14	9.0000
CUG	chr12:120313785-120314037(-)$1	252	6	9	9.0000
CUG	chr3:184045127-184045335(+)$1	208	49	52	9.0000
CUG	chr3:15371927-15372174(-)$1	247	10	13	9.0000
CUG	chr17:61892867-61893129(+)$1	262	5	8	9.0000
CUG	chr15:41366626-41366863(-)$1	237	38	41	9.0000
CUG	chr3:171968947-171969240(+)$1	293	68	71	9.0000
CUG	chr5:71490388-71490628(+)$1	240	16	19	9.0000
CUG	chr1:11076927-11077165(+)$1	238	92	95	9.0000
CUG	chr3:47663678-47663884(-)$1	206	56	59	9.0000
CUG	chr1:36754768-36755113(+)$1	345	20	23	9.0000
CUG	chr7:155471266-155471478(+)$1	212	166	169	9.0000
CUG	chr5:133502760-133502969(-)$1	209	22	25	9.0000
CUG	chr9:15485903-15486147(-)$1	244	36	39	9.0000
CUG	chr5:132406054-132406282(+)$1	228	45	48	9.0000
cug	chr1:226349227-226349454(-)$1	227	113	116	9.0000
CUG	chr12:6696521-6696785(-)$1	264	9	12	9.0000
CUG	chr14:90770410-90770707(-)$1	297	2	5	9.0000
CUG	chr9:131004415-131004623(+)$1	208	61	64	9.0000
cug	chr17:7797653-7797929(+)$1	276	39	42	9.0000
CUG	chr11:77333474-77333794(-)$1	320	64	67	9.0000
CUG	chr11:755844-756073(+)$1	229	78	81	9.0000
CUG	chr9:130885276-130885511(-)$1	235	44	47	9.0000
CUG	chr3:49138724-49138974(-)$1	250	23	26	9.0000
CUG	chr7:158677155-158677408(+)$1	253	10	13	9.0000
CUG	chr12:56566111-56566374(-)$1	263	79	82	9.0000
CUG	chr3:138417698-138417938(-)$1	240	26	29	9.0000
CUG	chr15:42731444-42731756(-)$1	312	39	42	9.0000
CUG	chr13:20577037-20577369(+)$1	332	57	60	9.0000
CUG	chr10:91497833-91498103(+)$1	270	5	8	9.0000
CUG	chr7:105146368-105146604(-)$1	236	0	3	9.0000
CUG	chrX:53610417-53610662(-)$1	245	16	19	9.0000
CUG	chr12:6707064-6707299(-)$1	235	10	13	9.0000
CUG	chr6:34951037-34951303(+)$1	266	72	75	9.0000
CUG	chr12:122612329-122612549(+)$1	220	12	15	9.0000
CUG	chrX:53436251-53436456(-)$1	205	40	43	9.0000
CUG	chr3:195041395-195041642(-)$1	247	143	146	9.0000
CUG	chr1:38052813-38053046(-)$1	233	65	68	9.0000
CUG	chr2:233710426-233710682(+)$1	256	20	23	9.0000
CUG	chr16:72136943-72137211(+)$1	268	12	15	9.0000
CUG	chr5:34937546-34937829(+)$1	283	61	64	9.0000
CUG	chr7:74125261-74125526(+)$1	265	10	13	9.0000
CUG	chr1:155340466-155340707(-)$1	241	40	43	9.0000
CUG	chr3:9486851-9487074(+)$1	223	113	116	9.0000
CUG	chr10:6146792-6147010(+)$1	218	35	38	9.0000
CUG	chr20:55091929-55092144(+)$1	215	2	5	9.0000
CUG	chr3:47747811-47748072(-)$1	261	4	7	9.0000
CUG	chr6:44218148-44218357(+)$1	209	108	111	9.0000
CUG	chr7:102957177-102957421(-)$1	244	3	6	9.0000
CUG	chr9:95060440-95060682(-)$1	242	32	35	9.0000
CUG	chr11:70263093-70263332(+)$1	239	8	11	9.0000
CUG	chr12:123804371-123804632(-)$1	261	58	61	9.0000
CUG	chr6:4047355-4047580(+)$1	225	80	83	9.0000
CUG	chr21:38525150-38525367(+)$1	217	1	4	9.0000
CUG	chr9:125898566-125898839(-)$1	273	88	91	9.0000
CUG	chr6:31857144-31857394(-)$1	250	0	3	9.0000
CUG	chr19:17263379-17263598(+)$1	219	53	56	9.0000
CUG	chr12:132199264-132199604(+)$1	340	18	21	9.0000
CUG	chr1:28531739-28531960(-)$1	221	6	9	9.0000
cug	chr12:124017843-124018139(-)$1	296	23	26	9.0000
CUG	chr19:18971534-18971776(+)$1	242	21	24	9.0000
CUG	chr9:136906896-136907166(-)$1	270	23	26	9.0000
CUG	chr3:180685798-180686094(+)$1	296	49	52	9.0000
CUG	chr10:99129099-99129406(-)$1	307	18	21	9.0000
CUG	chr8:144889648-144889884(-)$1	236	6	9	9.0000
CUG	chr11:66481460-66481716(-)$1	256	4	7	9.0000
CUG	chr4:69181945-69182209(-)$1	264	223	226	9.0000
CUG	chr7:91682000-91682247(+)$1	247	27	30	9.0000
CUG	chr5:176942607-176942841(-)$1	234	2	5	9.0000
CUG	chr8:144891623-144891841(-)$1	218	2	5	9.0000
CUG	chr14:24687488-24687728(-)$1	240	82	85	9.0000
CUG	chr16:24580749-24581008(+)$1	259	106	109	9.0000
CUG	chr17:43009326-43009569(-)$1	243	1	4	9.0000
CUG	chr2:48023081-48023302(+)$1	221	2	5	9.0000
CUG	chr11:71945470-71945698(+)$1	228	56	59	9.0000
CUG	chr17:36868032-36868342(+)$1	310	4	7	9.0000
CUG	chr1:222805444-222805681(+)$1	237	29	32	9.0000
CUG	chr9:139733270-139733575(+)$1	305	79	82	9.0000
CUG	chr15:59192018-59192230(-)$1	212	77	80	9.0000
CUG	chr7:32527243-32527469(-)$1	226	64	67	9.0000
CUG	chr14:23790738-23790986(+)$1	248	87	90	9.0000
CUG	chr11:34097827-34098044(+)$1	217	10	13	9.0000
CUG	chr4:140297512-140297728(+)$1	216	139	142	9.0000
CUG	chr16:1687760-1688010(+)$1	250	23	26	9.0000
CUG	chr5:179299798-179300091(-)$1	293	13	16	9.0000
cug	chr4:99969782-99970050(+)$1	268	4	7	9.0000
CUG	chr1:186301329-186301560(-)$1	231	169	172	9.0000
CUG	chr7:150921959-150922175(-)$1	216	21	24	9.0000
CUG	chr4:107258001-107258279(+)$1	278	57	60	9.0000
CUG	chrX:64754343-64754679(-)$1	336	29	32	9.0000
CUG	chr19:50188109-50188417(+)$1	308	7	10	9.0000
CUG	chr5:71490501-71490745(+)$1	244	5	8	9.0000
CUG	chr19:16646306-16646547(-)$1	241	2	5	9.0000

#otherMatches

#Struct PSSM
GGG	chr12:69128988-69129225(+)$1	237	0	3	9.0000
ddd	chr4:24572250-24572528(-)$1	278	117	120	9.0000
:DD	chr16:47345103-47345393(-)$1	290	45	48	9.0000
dll	chrX:70598094-70598346(+)$1	252	6	9	9.0000
:::	chr17:16024352-16024680(-)$1	328	144	147	9.0000
{CC	chr21:47775298-47775553(+)$1	255	11	14	9.0000
:::	chr12:120313785-120314037(-)$1	252	6	9	9.0000
cc"	chr3:184045127-184045335(+)$1	208	49	52	9.0000
fff	chr3:15371927-15372174(-)$1	247	10	13	9.0000
C{C	chr17:61892867-61893129(+)$1	262	5	8	9.0000
ff2	chr15:41366626-41366863(-)$1	237	38	41	9.0000
ddd	chr3:171968947-171969240(+)$1	293	68	71	9.0000
!!b	chr5:71490388-71490628(+)$1	240	16	19	9.0000
fff	chr1:11076927-11077165(+)$1	238	92	95	9.0000
[bb	chr3:47663678-47663884(-)$1	206	56	59	9.0000
B{I	chr1:36754768-36755113(+)$1	345	20	23	9.0000
ddd	chr7:155471266-155471478(+)$1	212	166	169	9.0000
dd]	chr5:133502760-133502969(-)$1	209	22	25	9.0000
CHH	chr9:15485903-15486147(-)$1	244	36	39	9.0000
ddn	chr5:132406054-132406282(+)$1	228	45	48	9.0000
e::	chr1:226349227-226349454(-)$1	227	113	116	9.0000
KCC	chr12:6696521-6696785(-)$1	264	9	12	9.0000
ddd	chr14:90770410-90770707(-)$1	297	2	5	9.0000
sss	chr9:131004415-131004623(+)$1	208	61	64	9.0000
KKC	chr17:7797653-7797929(+)$1	276	39	42	9.0000
JJJ	chr11:77333474-77333794(-)$1	320	64	67	9.0000
###	chr11:755844-756073(+)$1	229	78	81	9.0000
ggg	chr9:130885276-130885511(-)$1	235	44	47	9.0000
::d	chr3:49138724-49138974(-)$1	250	23	26	9.0000
"gg	chr7:158677155-158677408(+)$1	253	10	13	9.0000
ddD	chr12:56566111-56566374(-)$1	263	79	82	9.0000
eee	chr3:138417698-138417938(-)$1	240	26	29	9.0000
CCE	chr15:42731444-42731756(-)$1	312	39	42	9.0000
ddd	chr13:20577037-20577369(+)$1	332	57	60	9.0000
ccc	chr10:91497833-91498103(+)$1	270	5	8	9.0000
:::	chr7:105146368-105146604(-)$1	236	0	3	9.0000
bb[	chrX:53610417-53610662(-)$1	245	16	19	9.0000
gg[	chr12:6707064-6707299(-)$1	235	10	13	9.0000
33c	chr6:34951037-34951303(+)$1	266	72	75	9.0000
hhe	chr12:122612329-122612549(+)$1	220	12	15	9.0000
CCC	chrX:53436251-53436456(-)$1	205	40	43	9.0000
eeo	chr3:195041395-195041642(-)$1	247	143	146	9.0000
^^^	chr1:38052813-38053046(-)$1	233	65	68	9.0000
eee	chr2:233710426-233710682(+)$1	256	20	23	9.0000
ff[	chr16:72136943-72137211(+)$1	268	12	15	9.0000
dd]	chr5:34937546-34937829(+)$1	283	61	64	9.0000
ddd	chr7:74125261-74125526(+)$1	265	10	13	9.0000
qqq	chr1:155340466-155340707(-)$1	241	40	43	9.0000
DDD	chr3:9486851-9487074(+)$1	223	113	116	9.0000
xxx	chr10:6146792-6147010(+)$1	218	35	38	9.0000
HHH	chr20:55091929-55092144(+)$1	215	2	5	9.0000
:::	chr3:47747811-47748072(-)$1	261	4	7	9.0000
CCC	chr6:44218148-44218357(+)$1	209	108	111	9.0000
B{C	chr7:102957177-102957421(-)$1	244	3	6	9.0000
:::	chr9:95060440-95060682(-)$1	242	32	35	9.0000
bGG	chr11:70263093-70263332(+)$1	239	8	11	9.0000
ccc	chr12:123804371-123804632(-)$1	261	58	61	9.0000
666	chr6:4047355-4047580(+)$1	225	80	83	9.0000
:::	chr21:38525150-38525367(+)$1	217	1	4	9.0000
ddd	chr9:125898566-125898839(-)$1	273	88	91	9.0000
:::	chr6:31857144-31857394(-)$1	250	0	3	9.0000
:JJ	chr19:17263379-17263598(+)$1	219	53	56	9.0000
II{	chr12:132199264-132199604(+)$1	340	18	21	9.0000
:ff	chr1:28531739-28531960(-)$1	221	6	9	9.0000
iii	chr12:124017843-124018139(-)$1	296	23	26	9.0000
EEE	chr19:18971534-18971776(+)$1	242	21	24	9.0000
fff	chr9:136906896-136907166(-)$1	270	23	26	9.0000
bb[	chr3:180685798-180686094(+)$1	296	49	52	9.0000
::c	chr10:99129099-99129406(-)$1	307	18	21	9.0000
GGG	chr8:144889648-144889884(-)$1	236	6	9	9.0000
ff[	chr11:66481460-66481716(-)$1	256	4	7	9.0000
ggg	chr4:69181945-69182209(-)$1	264	223	226	9.0000
KKC	chr7:91682000-91682247(+)$1	247	27	30	9.0000
EEE	chr5:176942607-176942841(-)$1	234	2	5	9.0000
EEE	chr8:144891623-144891841(-)$1	218	2	5	9.0000
qqf	chr14:24687488-24687728(-)$1	240	82	85	9.0000
iib	chr16:24580749-24581008(+)$1	259	106	109	9.0000
::G	chr17:43009326-43009569(-)$1	243	1	4	9.0000
bb[	chr2:48023081-48023302(+)$1	221	2	5	9.0000
ggg	chr11:71945470-71945698(+)$1	228	56	59	9.0000
FFL	chr17:36868032-36868342(+)$1	310	4	7	9.0000
ddd	chr1:222805444-222805681(+)$1	237	29	32	9.0000
CCC	chr9:139733270-139733575(+)$1	305	79	82	9.0000
ggg	chr15:59192018-59192230(-)$1	212	77	80	9.0000
{EE	chr7:32527243-32527469(-)$1	226	64	67	9.0000
!!a	chr14:23790738-23790986(+)$1	248	87	90	9.0000
:ee	chr11:34097827-34098044(+)$1	217	10	13	9.0000
eee	chr4:140297512-140297728(+)$1	216	139	142	9.0000
A{F	chr16:1687760-1688010(+)$1	250	23	26	9.0000
bbq	chr5:179299798-179300091(-)$1	293	13	16	9.0000
ee[	chr4:99969782-99970050(+)$1	268	4	7	9.0000
ggg	chr1:186301329-186301560(-)$1	231	169	172	9.0000
ddd	chr7:150921959-150922175(-)$1	216	21	24	9.0000
sss	chr4:107258001-107258279(+)$1	278	57	60	9.0000
hhh	chrX:64754343-64754679(-)$1	336	29	32	9.0000
""=	chr19:50188109-50188417(+)$1	308	7	10	9.0000
{BB	chr5:71490501-71490745(+)$1	244	5	8	9.0000
CCC	chr19:16646306-16646547(-)$1	241	2	5	9.0000

#DB
(((	chr12:69128988-69129225(+)$1	1	0	3	9.0000
(((	chr4:24572250-24572528(-)$1	1	117	120	9.0000
.((	chr16:47345103-47345393(-)$1	1	45	48	9.0000
(..	chrX:70598094-70598346(+)$1	1	6	9	9.0000
...	chr17:16024352-16024680(-)$1	1	144	147	9.0000
.((	chr21:47775298-47775553(+)$1	1	11	14	9.0000
...	chr12:120313785-120314037(-)$1	1	6	9	9.0000
((.	chr3:184045127-184045335(+)$1	1	49	52	9.0000
(((	chr3:15371927-15372174(-)$1	1	10	13	9.0000
(.(	chr17:61892867-61893129(+)$1	1	5	8	9.0000
)).	chr15:41366626-41366863(-)$1	1	38	41	9.0000
(((	chr3:171968947-171969240(+)$1	1	68	71	9.0000
..(	chr5:71490388-71490628(+)$1	1	16	19	9.0000
(((	chr1:11076927-11077165(+)$1	1	92	95	9.0000
.((	chr3:47663678-47663884(-)$1	1	56	59	9.0000
(.(	chr1:36754768-36755113(+)$1	1	20	23	9.0000
)))	chr7:155471266-155471478(+)$1	1	166	169	9.0000
)).	chr5:133502760-133502969(-)$1	1	22	25	9.0000
(((	chr9:15485903-15486147(-)$1	1	36	39	9.0000
((.	chr5:132406054-132406282(+)$1	1	45	48	9.0000
)..	chr1:226349227-226349454(-)$1	1	113	116	9.0000
.((	chr12:6696521-6696785(-)$1	1	9	12	9.0000
(((	chr14:90770410-90770707(-)$1	1	2	5	9.0000
...	chr9:131004415-131004623(+)$1	1	61	64	9.0000
..(	chr17:7797653-7797929(+)$1	1	39	42	9.0000
(((	chr11:77333474-77333794(-)$1	1	64	67	9.0000
...	chr11:755844-756073(+)$1	1	78	81	9.0000
)))	chr9:130885276-130885511(-)$1	1	44	47	9.0000
..(	chr3:49138724-49138974(-)$1	1	23	26	9.0000
.((	chr7:158677155-158677408(+)$1	1	10	13	9.0000
))(	chr12:56566111-56566374(-)$1	1	79	82	9.0000
(((	chr3:138417698-138417938(-)$1	1	26	29	9.0000
(((	chr15:42731444-42731756(-)$1	1	39	42	9.0000
(((	chr13:20577037-20577369(+)$1	1	57	60	9.0000
(((	chr10:91497833-91498103(+)$1	1	5	8	9.0000
...	chr7:105146368-105146604(-)$1	1	0	3	9.0000
((.	chrX:53610417-53610662(-)$1	1	16	19	9.0000
((.	chr12:6707064-6707299(-)$1	1	10	13	9.0000
..)	chr6:34951037-34951303(+)$1	1	72	75	9.0000
(((	chr12:122612329-122612549(+)$1	1	12	15	9.0000
(((	chrX:53436251-53436456(-)$1	1	40	43	9.0000
((.	chr3:195041395-195041642(-)$1	1	143	146	9.0000
...	chr1:38052813-38053046(-)$1	1	65	68	9.0000
(((	chr2:233710426-233710682(+)$1	1	20	23	9.0000
((.	chr16:72136943-72137211(+)$1	1	12	15	9.0000
)).	chr5:34937546-34937829(+)$1	1	61	64	9.0000
(((	chr7:74125261-74125526(+)$1	1	10	13	9.0000
...	chr1:155340466-155340707(-)$1	1	40	43	9.0000
)))	chr3:9486851-9487074(+)$1	1	113	116	9.0000
...	chr10:6146792-6147010(+)$1	1	35	38	9.0000
(((	chr20:55091929-55092144(+)$1	1	2	5	9.0000
...	chr3:47747811-47748072(-)$1	1	4	7	9.0000
)))	chr6:44218148-44218357(+)$1	1	108	111	9.0000
(.(	chr7:102957177-102957421(-)$1	1	3	6	9.0000
...	chr9:95060440-95060682(-)$1	1	32	35	9.0000
)((	chr11:70263093-70263332(+)$1	1	8	11	9.0000
)))	chr12:123804371-123804632(-)$1	1	58	61	9.0000
...	chr6:4047355-4047580(+)$1	1	80	83	9.0000
...	chr21:38525150-38525367(+)$1	1	1	4	9.0000
)))	chr9:125898566-125898839(-)$1	1	88	91	9.0000
...	chr6:31857144-31857394(-)$1	1	0	3	9.0000
.((	chr19:17263379-17263598(+)$1	1	53	56	9.0000
((.	chr12:132199264-132199604(+)$1	1	18	21	9.0000
.((	chr1:28531739-28531960(-)$1	1	6	9	9.0000
(((	chr12:124017843-124018139(-)$1	1	23	26	9.0000
(((	chr19:18971534-18971776(+)$1	1	21	24	9.0000
)))	chr9:136906896-136907166(-)$1	1	23	26	9.0000
((.	chr3:180685798-180686094(+)$1	1	49	52	9.0000
..(	chr10:99129099-99129406(-)$1	1	18	21	9.0000
(((	chr8:144889648-144889884(-)$1	1	6	9	9.0000
((.	chr11:66481460-66481716(-)$1	1	4	7	9.0000
)))	chr4:69181945-69182209(-)$1	1	223	226	9.0000
..(	chr7:91682000-91682247(+)$1	1	27	30	9.0000
(((	chr5:176942607-176942841(-)$1	1	2	5	9.0000
(((	chr8:144891623-144891841(-)$1	1	2	5	9.0000
..)	chr14:24687488-24687728(-)$1	1	82	85	9.0000
(((	chr16:24580749-24581008(+)$1	1	106	109	9.0000
..(	chr17:43009326-43009569(-)$1	1	1	4	9.0000
((.	chr2:48023081-48023302(+)$1	1	2	5	9.0000
(((	chr11:71945470-71945698(+)$1	1	56	59	9.0000
((.	chr17:36868032-36868342(+)$1	1	4	7	9.0000
)))	chr1:222805444-222805681(+)$1	1	29	32	9.0000
(((	chr9:139733270-139733575(+)$1	1	79	82	9.0000
(((	chr15:59192018-59192230(-)$1	1	77	80	9.0000
.((	chr7:32527243-32527469(-)$1	1	64	67	9.0000
..(	chr14:23790738-23790986(+)$1	1	87	90	9.0000
.((	chr11:34097827-34098044(+)$1	1	10	13	9.0000
(((	chr4:140297512-140297728(+)$1	1	139	142	9.0000
(.(	chr16:1687760-1688010(+)$1	1	23	26	9.0000
((.	chr5:179299798-179300091(-)$1	1	13	16	9.0000
((.	chr4:99969782-99970050(+)$1	1	4	7	9.0000
)))	chr1:186301329-186301560(-)$1	1	169	172	9.0000
)))	chr7:150921959-150922175(-)$1	1	21	24	9.0000
...	chr4:107258001-107258279(+)$1	1	57	60	9.0000
)))	chrX:64754343-64754679(-)$1	1	29	32	9.0000
..(	chr19:50188109-50188417(+)$1	1	7	10	9.0000
.((	chr5:71490501-71490745(+)$1	1	5	8	9.0000
(((	chr19:16646306-16646547(-)$1	1	2	5	9.0000

#PSSM
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_UTR_m1_run1.nuc.txt

#NT
UGGA	chr11:62609112-62609348(-)$1	236	0	4	12.0000
UGGA	chr11:93464097-93464302(-)$1	205	80	84	12.0000
UGGA	chr15:83424595-83424832(+)$1	237	82	86	12.0000
UGGA	chr11:75111412-75111623(+)$1	211	5	9	12.0000
UGGA	chr3:12881737-12881950(-)$1	213	20	24	12.0000
UGGA	chr15:83424664-83424868(+)$1	204	13	17	12.0000
UGGA	chr17:7481276-7481480(+)$1	204	53	57	12.0000
UGGA	chr1:155648863-155649078(-)$1	215	141	145	12.0000
UGGA	chr6:31619957-31620228(-)$1	271	160	164	12.0000
UGGA	chr11:93463577-93463816(-)$1	239	68	72	12.0000
UGGA	chr17:27047494-27047696(+)$1	202	34	38	12.0000
UGGA	chr12:56991159-56991443(-)$1	284	227	231	12.0000
ugga	chr11:62609093-62609307(-)$1	214	121	125	12.0000
UGGA	chr17:7481301-7481512(+)$1	211	28	32	12.0000
UGGA	chr18:47017987-47018199(-)$1	212	3	7	12.0000
ugga	chr11:62609081-62609293(-)$1	212	107	111	12.0000
UGGA	chr18:47017960-47018172(-)$1	212	7	11	12.0000
UGGA	chr11:93463664-93463872(-)$1	208	9	13	12.0000
UGGA	chr11:75111375-75111597(+)$1	222	42	46	12.0000
ugga	chr12:125608678-125608932(+)$1	254	93	97	12.0000
UGGA	chr11:93463616-93463830(-)$1	214	82	86	12.0000
ugga	chr11:62609021-62609250(-)$1	229	64	68	12.0000
UGGA	chr16:23478538-23478761(-)$1	223	185	189	12.0000
UGGA	chr11:93464154-93464361(-)$1	207	139	143	12.0000
UGGA	chr11:75111426-75111679(+)$1	253	172	176	12.0000
UGGA	chr18:47017952-47018160(-)$1	208	16	20	12.0000
ugga	chr11:122929523-122929742(-)$1	219	51	55	12.0000
UGGA	chr11:93466528-93466737(-)$1	209	20	24	12.0000
UGGA	chr1:155648892-155649102(-)$1	210	165	169	12.0000
UGGA	chr11:93466537-93466746(-)$1	209	29	33	12.0000
UGGA	chr11:126146110-126146393(+)$1	283	63	67	12.0000
ugGA	chr6:160526848-160527091(+)$1	243	125	129	12.0000
UGGA	chr3:12881765-12881974(-)$1	209	44	48	12.0000
ugga	chr11:122929515-122929718(-)$1	203	27	31	12.0000
ugga	chr11:62609050-62609259(-)$1	209	73	77	12.0000
UGGA	chr13:45911512-45911723(-)$1	211	115	119	12.0000
ugga	chr17:8076760-8077000(-)$1	240	156	160	12.0000
UGGA	chr11:93464107-93464311(-)$1	204	89	93	12.0000
UGGA	chr11:93464127-93464334(-)$1	207	112	116	12.0000
UGGA	chr11:93464102-93464307(-)$1	205	85	89	12.0000
UGGA	chr11:8705738-8705940(+)$1	202	191	195	12.0000
UGGA	chr11:93464058-93464264(-)$1	206	42	46	12.0000
UGGA	chr11:93466565-93466777(-)$1	212	60	64	12.0000
UGGA	chr3:12881809-12882049(-)$1	240	119	123	12.0000
UGGA	chr17:27047496-27047700(+)$1	204	32	36	12.0000
UGGA	chr17:27047500-27047720(+)$1	220	28	32	12.0000
UGGA	chr3:12881729-12881933(-)$1	204	3	7	12.0000
UGGA	chr17:27047520-27047729(+)$1	209	8	12	12.0000
UGGA	chr18:47017972-47018187(-)$1	215	22	26	12.0000
UGGA	chr11:93464082-93464287(-)$1	205	65	69	12.0000
UGGA	chr11:93463649-93463853(-)$1	204	105	109	12.0000
UGGA	chr11:93463655-93463859(-)$1	204	111	115	12.0000
UGGA	chr22:20113901-20114129(+)$1	228	210	214	12.0000
UGGA	chr17:7481280-7481488(+)$1	208	49	53	12.0000
UGGA	chr11:93464042-93464258(-)$1	216	36	40	12.0000
UGGA	chr3:12881750-12881964(-)$1	214	34	38	12.0000
UGGA	chr11:93464123-93464327(-)$1	204	105	109	12.0000
UGGA	chr9:138899052-138899327(-)$1	275	229	233	12.0000
UGGA	chr18:47017938-47018152(-)$1	214	8	12	12.0000
UGGA	chr17:27050619-27050856(+)$1	237	22	26	12.0000
UGGA	chr11:93464161-93464366(-)$1	205	144	148	12.0000
UGGA	chr19:5140340-5140555(+)$1	215	46	50	12.0000
UGGA	chr6:31804784-31804988(+)$1	204	146	150	12.0000
UGGA	chr17:7481172-7481412(+)$1	240	157	161	12.0000
UGGA	chr6:31804765-31804984(+)$1	219	165	169	12.0000
UGGA	chr17:36882508-36882830(+)$1	322	45	49	12.0000
UGGA	chr3:12881776-12881979(-)$1	203	49	53	12.0000
UGGA	chr11:93464113-93464323(-)$1	210	101	105	12.0000
UGGA	chr3:12881733-12881937(-)$1	204	7	11	12.0000
UGGA	chr18:47017933-47018138(-)$1	205	69	73	12.0000
UGGA	chr3:12881708-12881926(-)$1	218	94	98	12.0000
UGGA	chr11:93463643-93463846(-)$1	203	98	102	12.0000
UGGA	chr11:93464064-93464273(-)$1	209	51	55	12.0000
UGGA	chr11:93463646-93463849(-)$1	203	101	105	12.0000
UGGA	chr11:75111332-75111562(+)$1	230	85	89	12.0000
UGGA	chr3:12881726-12881929(-)$1	203	97	101	12.0000
UGGA	chr11:8705740-8705945(+)$1	205	189	193	12.0000
UGGA	chr3:12881792-12882002(-)$1	210	72	76	12.0000
ugga	chr11:62609012-62609221(-)$1	209	35	39	12.0000
UGGA	chr15:83424632-83424859(+)$1	227	45	49	12.0000
UGGA	chr5:85916221-85916488(+)$1	267	36	40	12.0000

#otherMatches

#Struct PSSM
cc22	chr11:93463672-93463907(-)$1	235	44	48	12.0000
::::	chr11:62609112-62609348(-)$1	236	0	4	12.0000
ccc2	chr11:93464097-93464302(-)$1	205	80	84	12.0000
ff55	chr15:83424595-83424832(+)$1	237	82	86	12.0000
"ccc	chr11:75111412-75111623(+)$1	211	5	9	12.0000
dddg	chr3:12881737-12881950(-)$1	213	20	24	12.0000
DD::	chr15:83424664-83424868(+)$1	204	13	17	12.0000
GMMM	chr17:7481276-7481480(+)$1	204	53	57	12.0000
====	chr1:155648863-155649078(-)$1	215	141	145	12.0000
22ff	chr6:31619957-31620228(-)$1	271	160	164	12.0000
::::	chr11:93463577-93463816(-)$1	239	68	72	12.0000
eeee	chr17:27047494-27047696(+)$1	202	34	38	12.0000
beee	chr12:56991159-56991443(-)$1	284	227	231	12.0000
~~FF	chr11:62609093-62609307(-)$1	214	121	125	12.0000
GMMM	chr17:7481301-7481512(+)$1	211	28	32	12.0000
D{A{	chr18:47017987-47018199(-)$1	212	3	7	12.0000
::::	chr11:62609081-62609293(-)$1	212	107	111	12.0000
F{BB	chr18:47017960-47018172(-)$1	212	7	11	12.0000
FFFF	chr11:93463664-93463872(-)$1	208	9	13	12.0000
3===	chr11:75111375-75111597(+)$1	222	42	46	12.0000
hhhh	chr12:125608678-125608932(+)$1	254	93	97	12.0000
ee::	chr11:93463616-93463830(-)$1	214	82	86	12.0000
::DD	chr11:62609021-62609250(-)$1	229	64	68	12.0000
oodd	chr16:23478538-23478761(-)$1	223	185	189	12.0000
ccc2	chr11:93464154-93464361(-)$1	207	139	143	12.0000
mccc	chr11:75111426-75111679(+)$1	253	172	176	12.0000
ee::	chr18:47017952-47018160(-)$1	208	16	20	12.0000
dddr	chr11:122929523-122929742(-)$1	219	51	55	12.0000
DDDD	chr11:93466528-93466737(-)$1	209	20	24	12.0000
====	chr1:155648892-155649102(-)$1	210	165	169	12.0000
^eee	chr11:93466537-93466746(-)$1	209	29	33	12.0000
ppcc	chr11:126146110-126146393(+)$1	283	63	67	12.0000
gg[c	chr6:160526848-160527091(+)$1	243	125	129	12.0000
dddg	chr3:12881765-12881974(-)$1	209	44	48	12.0000
dddr	chr11:122929515-122929718(-)$1	203	27	31	12.0000
::::	chr11:62609050-62609259(-)$1	209	73	77	12.0000
eee3	chr13:45911512-45911723(-)$1	211	115	119	12.0000
{DDD	chr17:8076760-8077000(-)$1	240	156	160	12.0000
ccc2	chr11:93464107-93464311(-)$1	204	89	93	12.0000
ccc2	chr11:93464127-93464334(-)$1	207	112	116	12.0000
ccc2	chr11:93464102-93464307(-)$1	205	85	89	12.0000
ddd:	chr11:8705738-8705940(+)$1	202	191	195	12.0000
ccc2	chr11:93464058-93464264(-)$1	206	42	46	12.0000
2ccc	chr11:93466565-93466777(-)$1	212	60	64	12.0000
====	chr3:12881809-12882049(-)$1	240	119	123	12.0000
eeee	chr17:27047496-27047700(+)$1	204	32	36	12.0000
CCC{	chr17:27047500-27047720(+)$1	220	28	32	12.0000
dddg	chr3:12881729-12881933(-)$1	204	3	7	12.0000
:FFF	chr17:27047520-27047729(+)$1	209	8	12	12.0000
F{BB	chr18:47017972-47018187(-)$1	215	22	26	12.0000
ccc2	chr11:93464082-93464287(-)$1	205	65	69	12.0000
ee::	chr11:93463649-93463853(-)$1	204	105	109	12.0000
GGGG	chr11:93463655-93463859(-)$1	204	111	115	12.0000
dddl	chr22:20113901-20114129(+)$1	228	210	214	12.0000
GMMM	chr17:7481280-7481488(+)$1	208	49	53	12.0000
eeeo	chr11:93464042-93464258(-)$1	216	36	40	12.0000
dddg	chr3:12881750-12881964(-)$1	214	34	38	12.0000
ccc2	chr11:93464123-93464327(-)$1	204	105	109	12.0000
gsss	chr9:138899052-138899327(-)$1	275	229	233	12.0000
F:::	chr18:47017938-47018152(-)$1	214	8	12	12.0000
GGGL	chr17:27050619-27050856(+)$1	237	22	26	12.0000
ccc2	chr11:93464161-93464366(-)$1	205	144	148	12.0000
eees	chr19:5140340-5140555(+)$1	215	46	50	12.0000
ffff	chr6:31804784-31804988(+)$1	204	146	150	12.0000
[ccc	chr17:7481172-7481412(+)$1	240	157	161	12.0000
ffff	chr6:31804765-31804984(+)$1	219	165	169	12.0000
ccmm	chr17:36882508-36882830(+)$1	322	45	49	12.0000
dddg	chr3:12881776-12881979(-)$1	203	49	53	12.0000
ccc2	chr11:93464113-93464323(-)$1	210	101	105	12.0000
dddg	chr3:12881733-12881937(-)$1	204	7	11	12.0000
2ccc	chr18:47017933-47018138(-)$1	205	69	73	12.0000
eeee	chr3:12881708-12881926(-)$1	218	94	98	12.0000
::::	chr11:93463643-93463846(-)$1	203	98	102	12.0000
ccc2	chr11:93464064-93464273(-)$1	209	51	55	12.0000
ee::	chr11:93463646-93463849(-)$1	203	101	105	12.0000
3===	chr11:75111332-75111562(+)$1	230	85	89	12.0000
eeee	chr3:12881726-12881929(-)$1	203	97	101	12.0000
ddd:	chr11:8705740-8705945(+)$1	205	189	193	12.0000
====	chr3:12881792-12882002(-)$1	210	72	76	12.0000
::::	chr11:62609012-62609221(-)$1	209	35	39	12.0000
BBLL	chr15:83424632-83424859(+)$1	227	45	49	12.0000
ssss	chr5:85916221-85916488(+)$1	267	36	40	12.0000

#DB
))..	chr11:93463672-93463907(-)$1	1	44	48	12.0000
....	chr11:62609112-62609348(-)$1	1	0	4	12.0000
))).	chr11:93464097-93464302(-)$1	1	80	84	12.0000
))..	chr15:83424595-83424832(+)$1	1	82	86	12.0000
.(((	chr11:75111412-75111623(+)$1	1	5	9	12.0000
((((	chr3:12881737-12881950(-)$1	1	20	24	12.0000
((..	chr15:83424664-83424868(+)$1	1	13	17	12.0000
(...	chr17:7481276-7481480(+)$1	1	53	57	12.0000
))))	chr1:155648863-155649078(-)$1	1	141	145	12.0000
..))	chr6:31619957-31620228(-)$1	1	160	164	12.0000
....	chr11:93463577-93463816(-)$1	1	68	72	12.0000
))))	chr17:27047494-27047696(+)$1	1	34	38	12.0000
((((	chr12:56991159-56991443(-)$1	1	227	231	12.0000
..))	chr11:62609093-62609307(-)$1	1	121	125	12.0000
(...	chr17:7481301-7481512(+)$1	1	28	32	12.0000
(.(.	chr18:47017987-47018199(-)$1	1	3	7	12.0000
....	chr11:62609081-62609293(-)$1	1	107	111	12.0000
(.((	chr18:47017960-47018172(-)$1	1	7	11	12.0000
((((	chr11:93463664-93463872(-)$1	1	9	13	12.0000
.)))	chr11:75111375-75111597(+)$1	1	42	46	12.0000
))))	chr12:125608678-125608932(+)$1	1	93	97	12.0000
))..	chr11:93463616-93463830(-)$1	1	82	86	12.0000
..((	chr11:62609021-62609250(-)$1	1	64	68	12.0000
..))	chr16:23478538-23478761(-)$1	1	185	189	12.0000
))).	chr11:93464154-93464361(-)$1	1	139	143	12.0000
.)))	chr11:75111426-75111679(+)$1	1	172	176	12.0000
))..	chr18:47017952-47018160(-)$1	1	16	20	12.0000
(((.	chr11:122929523-122929742(-)$1	1	51	55	12.0000
((((	chr11:93466528-93466737(-)$1	1	20	24	12.0000
))))	chr1:155648892-155649102(-)$1	1	165	169	12.0000
.)))	chr11:93466537-93466746(-)$1	1	29	33	12.0000
..))	chr11:126146110-126146393(+)$1	1	63	67	12.0000
((.(	chr6:160526848-160527091(+)$1	1	125	129	12.0000
((((	chr3:12881765-12881974(-)$1	1	44	48	12.0000
(((.	chr11:122929515-122929718(-)$1	1	27	31	12.0000
....	chr11:62609050-62609259(-)$1	1	73	77	12.0000
))).	chr13:45911512-45911723(-)$1	1	115	119	12.0000
.(((	chr17:8076760-8077000(-)$1	1	156	160	12.0000
))).	chr11:93464107-93464311(-)$1	1	89	93	12.0000
))).	chr11:93464127-93464334(-)$1	1	112	116	12.0000
))).	chr11:93464102-93464307(-)$1	1	85	89	12.0000
))).	chr11:8705738-8705940(+)$1	1	191	195	12.0000
))).	chr11:93464058-93464264(-)$1	1	42	46	12.0000
.)))	chr11:93466565-93466777(-)$1	1	60	64	12.0000
))))	chr3:12881809-12882049(-)$1	1	119	123	12.0000
))))	chr17:27047496-27047700(+)$1	1	32	36	12.0000
(((.	chr17:27047500-27047720(+)$1	1	28	32	12.0000
((((	chr3:12881729-12881933(-)$1	1	3	7	12.0000
.(((	chr17:27047520-27047729(+)$1	1	8	12	12.0000
(.((	chr18:47017972-47018187(-)$1	1	22	26	12.0000
))).	chr11:93464082-93464287(-)$1	1	65	69	12.0000
))..	chr11:93463649-93463853(-)$1	1	105	109	12.0000
))))	chr11:93463655-93463859(-)$1	1	111	115	12.0000
(((.	chr22:20113901-20114129(+)$1	1	210	214	12.0000
(...	chr17:7481280-7481488(+)$1	1	49	53	12.0000
(((.	chr11:93464042-93464258(-)$1	1	36	40	12.0000
((((	chr3:12881750-12881964(-)$1	1	34	38	12.0000
))).	chr11:93464123-93464327(-)$1	1	105	109	12.0000
(...	chr9:138899052-138899327(-)$1	1	229	233	12.0000
(...	chr18:47017938-47018152(-)$1	1	8	12	12.0000
(((.	chr17:27050619-27050856(+)$1	1	22	26	12.0000
))).	chr11:93464161-93464366(-)$1	1	144	148	12.0000
(((.	chr19:5140340-5140555(+)$1	1	46	50	12.0000
))))	chr6:31804784-31804988(+)$1	1	146	150	12.0000
.(((	chr17:7481172-7481412(+)$1	1	157	161	12.0000
))))	chr6:31804765-31804984(+)$1	1	165	169	12.0000
((..	chr17:36882508-36882830(+)$1	1	45	49	12.0000
((((	chr3:12881776-12881979(-)$1	1	49	53	12.0000
))).	chr11:93464113-93464323(-)$1	1	101	105	12.0000
((((	chr3:12881733-12881937(-)$1	1	7	11	12.0000
.)))	chr18:47017933-47018138(-)$1	1	69	73	12.0000
))))	chr3:12881708-12881926(-)$1	1	94	98	12.0000
....	chr11:93463643-93463846(-)$1	1	98	102	12.0000
))).	chr11:93464064-93464273(-)$1	1	51	55	12.0000
))..	chr11:93463646-93463849(-)$1	1	101	105	12.0000
.)))	chr11:75111332-75111562(+)$1	1	85	89	12.0000
))))	chr3:12881726-12881929(-)$1	1	97	101	12.0000
))).	chr11:8705740-8705945(+)$1	1	189	193	12.0000
))))	chr3:12881792-12882002(-)$1	1	72	76	12.0000
....	chr11:62609012-62609221(-)$1	1	35	39	12.0000
((..	chr15:83424632-83424859(+)$1	1	45	49	12.0000
....	chr5:85916221-85916488(+)$1	1	36	40	12.0000

#PSSM
U : 0.87	u : 0.12	
G : 0.87	g : 0.12	
G : 0.89	g : 0.10	
A : 0.89	a : 0.10	

#score	984.0000000000001
#seq	82
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_CDS_m1_run1.nuc.txt

#NT
GCUGAGGGGGCGGC	chr20:35724171-35724500(-)$1	329	190	204	20.6666
gcgacggcggcgga	chr8:30669827-30670092(-)$1	265	39	53	22.4444
gcggcggcggcggc	chr5:133707165-133707394(+)$1	229	1	15	30.3333
CCGGCAGUGGCGGC	chr9:15422774-15423066(+)$1	292	167	181	19.0000
GCGGCGACGGUGGC	chr22:38902069-38902317(-)$1	248	135	149	23.8888
gcggcgcccggggc	chr7:158622049-158622304(-)$1	255	199	213	20.2222
gcggcggcggcggc	chr19:6739607-6739900(+)$1	293	142	156	30.3333
GCAGCGGCGGCGGC	chr12:56693895-56694180(-)$1	285	117	131	26.8888
GAGGCGGCGGUGGC	chr1:153930840-153931111(-)$1	271	41	55	24.1111
ugggcggcggcggc	chr4:129208779-129209059(-)$1	280	231	245	23.0000
CGGGCGGCGGAGGC	chr17:57232261-57232556(-)$1	295	155	169	20.0000
GAGGCGAUGGCGGC	chrX:153060016-153060294(+)$1	278	120	134	19.8888
GCCGCGGCGGAGGC	chr19:5719788-5720057(-)$1	269	131	145	23.7777
GCUUCAGCGGCGGC	chr16:29801967-29802234(+)$1	267	161	175	19.8888
GCGGCGGCGGCGGC	chr1:201798183-201798499(+)$1	316	157	171	30.3333
GGUGCUGCGGCGGC	chr19:5719967-5720250(-)$1	283	157	171	20.4444
gcggcggcagcggc	chr5:137688338-137688618(+)$1	280	233	247	26.7777
gcggcgcgggcggg	chr9:101558621-101558914(-)$1	293	35	49	19.7777
gcggcgguagcggc	chr19:39138196-39138519(+)$1	323	104	118	23.4444
gccgcggccgcgcc	chr19:1605261-1605549(-)$1	288	69	83	18.7777
GCGGCGGAGGGGGC	chr8:17941466-17941707(-)$1	241	51	65	23.6666
GCGACGGGGGCGGG	chr17:79894942-79895209(-)$1	267	17	31	19.4444
CCGGAGGCUGCGGC	chr18:43678037-43678293(-)$1	256	49	63	19.1111
gcggcggcggcggc	chr16:30134333-30134598(-)$1	265	71	85	30.3333
GCGCCGGCGCUGGC	chr16:3767366-3767623(-)$1	257	174	188	19.3333
GCGGCGACGGUGGC	chr22:38902133-38902411(-)$1	278	229	243	23.8888
GGGGCGGCGAUGGC	chr1:68151561-68151874(+)$1	313	83	97	20.3333
GGGGCGGCUGGGGC	chr16:28962291-28962545(+)$1	254	105	119	21.1111
GCUGCCGGUGCGGC	chr12:56435825-56436138(+)$1	313	298	312	17.4444
GGGGAGCCUGCGGC	chr1:65897375-65897620(+)$1	245	117	131	17.0000
GCGGCAGCGGCGGC	chr14:96968695-96968950(+)$1	255	176	190	26.5555
GCGGCAGCCGAGGC	chr19:50180394-50180674(+)$1	280	146	160	19.8888
ggggccgcggcggc	chr16:75018806-75019087(-)$1	281	146	160	23.4444
GCGGAGGAGGCGGA	chr2:54197795-54198044(-)$1	249	42	56	18.8888
gcgucggcugcggc	chr16:2587900-2588217(+)$1	317	13	27	23.4444
GCUACGGCGGCCGC	chr6:166755853-166756149(-)$1	296	39	53	19.0000
GCUGGGGCUGCGGC	chr3:183602431-183602779(-)$1	348	173	187	20.1111
GCGGCGCCGGCGGA	chr19:1104627-1104870(+)$1	243	225	239	22.7777
GAAUCGGCGGCGGC	chr2:111435459-111435729(-)$1	270	93	107	19.6666
gcgguggcgguggc	chr19:12845270-12845568(-)$1	298	155	169	23.3333
GCUGCGGGGGCUGC	chr16:447202-447481(+)$1	279	46	60	19.8888
GGGGCGUGGGCGGC	chr15:101835271-101835546(-)$1	275	254	268	20.6666
GCGCCGCCGGUGGC	chr1:109289227-109289509(+)$1	282	135	149	20.2222
GCCGCGGCGCCGGC	chr16:4664693-4664967(-)$1	274	18	32	22.6666

#otherMatches

#Struct PSSM
mmmggggggg]ddd	chr17:55333991-55334261(+)$1	270	226	240	23.1111
pppppddddfffff	chr20:35724171-35724500(-)$1	329	190	204	20.6666
[a!!ddddccc"""	chr8:30669827-30670092(-)$1	265	39	53	22.4444
bb[bbmmmmbb]bb	chr5:133707165-133707394(+)$1	229	1	15	30.3333
CCCDDDDDDDD{FF	chr9:15422774-15423066(+)$1	292	167	181	19.0000
bb[bbmmmmbb]bb	chr22:38902069-38902317(-)$1	248	135	149	23.8888
DDhhhhhhhhdddd	chr7:158622049-158622304(-)$1	255	199	213	20.2222
eemmmmeeeeefff	chr19:6739607-6739900(+)$1	293	142	156	30.3333
AKKFFFFFFeeeee	chr12:56693895-56694180(-)$1	285	117	131	26.8888
IIILLLCCC:eeee	chr1:153930840-153931111(-)$1	271	41	55	24.1111
ddnnnnndddd22e	chr4:129208779-129209059(-)$1	280	231	245	23.0000
c]ffffffeeeeeb	chr17:57232261-57232556(-)$1	295	155	169	20.0000
bb]ccc]hhhhhhh	chrX:153060016-153060294(+)$1	278	120	134	19.8888
eeeee!!hhhhhhh	chr19:5719788-5720057(-)$1	269	131	145	23.7777
bbmmmmbb]bb]bb	chr16:29801967-29802234(+)$1	267	161	175	19.8888
EEEE}EEEEEIIII	chr1:201798183-201798499(+)$1	316	157	171	30.3333
FFFFFF========	chr19:5719967-5720250(-)$1	283	157	171	20.4444
eee===========	chr5:137688338-137688618(+)$1	280	233	247	26.7777
[a####a[cccnnn	chr9:101558621-101558914(-)$1	293	35	49	19.7777
bb!!a[bb!!dddd	chr19:39138196-39138519(+)$1	323	104	118	23.4444
bbmmmmbbeeeee]	chr19:1605261-1605549(-)$1	288	69	83	18.7777
==!!ammmma22==	chr8:17941466-17941707(-)$1	241	51	65	23.6666
cccGGGGGGG{HHH	chr17:79894942-79895209(-)$1	267	17	31	19.4444
IIII:=========	chr18:43678037-43678293(-)$1	256	49	63	19.1111
8a]hhhhhhhh:dd	chr16:30134333-30134598(-)$1	265	71	85	30.3333
fffff]bbccc]cc	chr16:3767366-3767623(-)$1	257	174	188	19.3333
fffCCCGGGGGGG}	chr22:38902133-38902411(-)$1	278	229	243	23.8888
HHHHHHDDDD{GGG	chr1:68151561-68151874(+)$1	313	83	97	20.3333
ellleeeee4444g	chr16:28962291-28962545(+)$1	254	105	119	21.1111
CC:ddddllldddd	chr12:56435825-56436138(+)$1	313	298	312	17.4444
b[a!!ffffff[a[	chr1:65897375-65897620(+)$1	245	117	131	17.0000
DD}BB}BB}FFFFF	chr14:96968695-96968950(+)$1	255	176	190	26.5555
[dddd!!=======	chr19:50180394-50180674(+)$1	280	146	160	19.8888
eeeeeccc!!eeee	chr16:75018806-75019087(-)$1	281	146	160	23.4444
nnnnna4444bb22	chr2:54197795-54198044(-)$1	249	42	56	18.8888
KACCC{EEEEE{EE	chr16:2587900-2588217(+)$1	317	13	27	23.4444
ddd]bb]eeeeecc	chr6:166755853-166756149(-)$1	296	39	53	19.0000
eeee[ffffff[cc	chr3:183602431-183602779(-)$1	348	173	187	20.1111
EEEFFFFFF}BB::	chr19:1104627-1104870(+)$1	243	225	239	22.7777
:::::=========	chr2:111435459-111435729(-)$1	270	93	107	19.6666
????EEEEE::::e	chr19:12845270-12845568(-)$1	298	155	169	23.3333
ffff]iiiiiiiii	chr16:447202-447481(+)$1	279	46	60	19.8888
hhhh22a]ccc22b	chr15:101835271-101835546(-)$1	275	254	268	20.6666
EEEEE}BBFFFFFF	chr1:109289227-109289509(+)$1	282	135	149	20.2222
EEEEEccc[eeeee	chr16:4664693-4664967(-)$1	274	18	32	22.6666

#DB
...))))))).)))	chr17:55333991-55334261(+)$1	1	226	240	23.1111
.....))))(((((	chr20:35724171-35724500(-)$1	1	190	204	20.6666
.(..(((((((...	chr8:30669827-30670092(-)$1	1	39	53	22.4444
((.((....)).))	chr5:133707165-133707394(+)$1	1	1	15	30.3333
(((((((((((.((	chr9:15422774-15423066(+)$1	1	167	181	19.0000
((.((....)).))	chr22:38902069-38902317(-)$1	1	135	149	23.8888
))((((((((((((	chr7:158622049-158622304(-)$1	1	199	213	20.2222
((....)))))(((	chr19:6739607-6739900(+)$1	1	142	156	30.3333
(..(((((((((((	chr12:56693895-56694180(-)$1	1	117	131	26.8888
(((...(((.((((	chr1:153930840-153931111(-)$1	1	41	55	24.1111
((.....))))..)	chr4:129208779-129209059(-)$1	1	231	245	23.0000
).))))))((((((	chr17:57232261-57232556(-)$1	1	155	169	20.0000
)).))).)))))))	chrX:153060016-153060294(+)$1	1	120	134	19.8888
(((((..(((((((	chr19:5719788-5720057(-)$1	1	131	145	23.7777
((....)).)).))	chr16:29801967-29802234(+)$1	1	161	175	19.8888
)))).)))))((((	chr1:201798183-201798499(+)$1	1	157	171	30.3333
))))))((((((((	chr19:5719967-5720250(-)$1	1	157	171	20.4444
))))))))))))))	chr5:137688338-137688618(+)$1	1	233	247	26.7777
.(....(.(((...	chr9:101558621-101558914(-)$1	1	35	49	19.7777
((..(.((..((((	chr19:39138196-39138519(+)$1	1	104	118	23.4444
((....))))))).	chr19:1605261-1605549(-)$1	1	69	83	18.7777
((..(....)..))	chr8:17941466-17941707(-)$1	1	51	65	23.6666
)))(((((((.(((	chr17:79894942-79895209(-)$1	1	17	31	19.4444
((((.(((((((((	chr18:43678037-43678293(-)$1	1	49	63	19.1111
.).)))))))).((	chr16:30134333-30134598(-)$1	1	71	85	30.3333
))))).))))).))	chr16:3767366-3767623(-)$1	1	174	188	19.3333
))))))))))))).	chr22:38902133-38902411(-)$1	1	229	243	23.8888
((((((((((.(((	chr1:68151561-68151874(+)$1	1	83	97	20.3333
(...)))))....)	chr16:28962291-28962545(+)$1	1	105	119	21.1111
)).((((...))))	chr12:56435825-56436138(+)$1	1	298	312	17.4444
(.(..((((((.(.	chr1:65897375-65897620(+)$1	1	117	131	17.0000
)).)).)).)))))	chr14:96968695-96968950(+)$1	1	176	190	26.5555
.((((..(((((((	chr19:50180394-50180674(+)$1	1	146	160	19.8888
((((((((..((((	chr16:75018806-75019087(-)$1	1	146	160	23.4444
.....)....))..	chr2:54197795-54198044(-)$1	1	42	56	18.8888
.((((.(((((.((	chr16:2587900-2588217(+)$1	1	13	27	23.4444
))).)).)))))((	chr6:166755853-166756149(-)$1	1	39	53	19.0000
((((.((((((.((	chr3:183602431-183602779(-)$1	1	173	187	20.1111
))))))))).))..	chr19:1104627-1104870(+)$1	1	225	239	22.7777
.....(((((((((	chr2:111435459-111435729(-)$1	1	93	107	19.6666
....)))))....(	chr19:12845270-12845568(-)$1	1	155	169	23.3333
)))).)))))))))	chr16:447202-447481(+)$1	1	46	60	19.8888
))))..).)))..)	chr15:101835271-101835546(-)$1	1	254	268	20.6666
))))).))((((((	chr1:109289227-109289509(+)$1	1	135	149	20.2222
((((((((.(((((	chr16:4664693-4664967(-)$1	1	18	32	22.6666

#PSSM
G : 0.64	g : 0.26	C : 0.06	u : 0.02	
C : 0.51	c : 0.24	G : 0.13	A : 0.06	g : 0.04	
G : 0.46	g : 0.26	U : 0.15	A : 0.04	C : 0.04	c : 0.02	
G : 0.57	g : 0.24	U : 0.04	A : 0.04	C : 0.04	a : 0.02	u : 0.02	
C : 0.59	c : 0.26	A : 0.08	G : 0.02	u : 0.02	
G : 0.57	g : 0.26	A : 0.08	U : 0.02	C : 0.02	c : 0.02	
G : 0.55	g : 0.24	A : 0.06	C : 0.06	c : 0.04	U : 0.02	
C : 0.48	c : 0.24	G : 0.13	U : 0.04	A : 0.04	g : 0.02	u : 0.02	
G : 0.57	g : 0.17	U : 0.11	c : 0.04	a : 0.04	C : 0.02	u : 0.02	
G : 0.62	g : 0.28	A : 0.04	C : 0.04	
C : 0.46	c : 0.24	U : 0.13	A : 0.06	G : 0.04	g : 0.02	u : 0.02	
G : 0.66	g : 0.28	C : 0.02	U : 0.02	
G : 0.71	g : 0.26	c : 0.02	
C : 0.64	c : 0.24	A : 0.04	a : 0.02	g : 0.02	G : 0.02	

#score	999.3333333333337
#seq	45
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF304YLR_TBRG4_transcript_m2_run2.nuc.txt

#NT
AUC	chrM:7211-7448(+)$1	237	46	49	9.0000
AUC	chrM:10869-11084(+)$1	215	23	26	9.0000
AUC	chrM:4819-5046(+)$1	227	25	28	9.0000
AUC	chrM:7248-7452(+)$1	204	9	12	9.0000
auc	chrM:4318-4544(+)$1	226	25	28	9.0000
AUC	chr19:34883337-34883586(+)$1	249	15	18	9.0000
AUC	chr1:568952-569203(+)$1	251	28	31	9.0000
AUC	chrM:10827-11055(+)$1	228	5	8	9.0000
AUC	chrM:9506-9728(+)$1	222	61	64	9.0000
AUC	chrM:9783-10002(+)$1	219	72	75	9.0000
AUC	chrM:7910-8119(+)$1	209	140	143	9.0000
AUC	chrM:10146-10373(+)$1	227	11	14	9.0000
AUC	chr16:10816694-10816927(-)$1	233	68	71	9.0000
AUC	chrM:7783-7989(+)$1	206	1	4	9.0000
AUC	chrM:10187-10394(+)$1	207	3	6	9.0000
auc	chr19:893453-893685(+)$1	232	170	173	9.0000
AUC	chrM:10131-10346(+)$1	215	26	29	9.0000
AUC	chrM:10791-10995(+)$1	204	41	44	9.0000
AUC	chrM:4623-4856(+)$1	233	15	18	9.0000
AUC	chrM:12510-12733(+)$1	223	13	16	9.0000
AUC	chr5:134262633-134262925(-)$1	292	21	24	9.0000
AUC	chrM:10173-10380(+)$1	207	17	20	9.0000
AUC	chrM:13375-13593(+)$1	218	0	3	9.0000
AUC	chrM:10180-10387(+)$1	207	10	13	9.0000
AUC	chrM:13608-13840(+)$1	232	153	156	9.0000
AUC	chrM:13305-13575(+)$1	270	16	19	9.0000
AUC	chrM:8544-8784(+)$1	240	22	25	9.0000
AUC	chrM:9828-10035(+)$1	207	27	30	9.0000
AUC	chrM:11267-11493(+)$1	226	50	53	9.0000
AUC	chrM:8510-8744(+)$1	234	27	30	9.0000
AUC	chr19:34882471-34882704(+)$1	233	1	4	9.0000
AUC	chrM:7757-7978(+)$1	221	27	30	9.0000
AUC	chrM:13393-13598(+)$1	205	126	129	9.0000
AUC	chrM:4192-4430(+)$1	238	45	48	9.0000
AUC	chrM:15708-15927(+)$1	219	4	7	9.0000
AUC	chrM:13437-13679(+)$1	242	82	85	9.0000
AUC	chrM:14383-14601(-)$1	218	159	162	9.0000
AUC	chrM:12622-12862(+)$1	240	12	15	9.0000
AUC	chr19:34882054-34882332(+)$1	278	67	70	9.0000
AUC	chrM:6584-6793(+)$1	209	58	61	9.0000
AUC	chr19:34882314-34882569(+)$1	255	8	11	9.0000
AUC	chrM:8437-8640(+)$1	203	100	103	9.0000
AUC	chrM:14361-14583(-)$1	222	141	144	9.0000
AUC	chrM:13171-13415(+)$1	244	12	15	9.0000
AUC	chrM:4846-5085(+)$1	239	38	41	9.0000
AUC	chrM:10756-10982(+)$1	226	109	112	9.0000
AUC	chrM:9802-10028(+)$1	226	53	56	9.0000
AUC	chrM:14969-15216(+)$1	247	9	12	9.0000
AUC	chrM:11298-11517(+)$1	219	19	22	9.0000
AUC	chrM:6564-6772(+)$1	208	78	81	9.0000
AUC	chrM:15404-15625(+)$1	221	18	21	9.0000
AUC	chrM:15031-15244(+)$1	213	7	10	9.0000
AUC	chrM:6475-6684(+)$1	209	19	22	9.0000
AUC	chrM:15016-15231(+)$1	215	4	7	9.0000
AUC	chrM:6514-6735(+)$1	221	5	8	9.0000
auc	chr3:25508894-25509134(+)$1	240	7	10	9.0000
AUC	chrM:15061-15268(+)$1	207	0	3	9.0000
AUC	chrM:15425-15658(+)$1	233	123	126	9.0000
AUC	chrM:7869-8109(+)$1	240	5	8	9.0000
AUC	chrM:491-727(+)$1	236	13	16	9.0000
AUC	chrM:12501-12710(+)$1	209	22	25	9.0000
AUC	chrM:6799-7050(+)$1	251	35	38	9.0000
AUC	chrM:9779-9983(+)$1	204	1	4	9.0000
AUC	chrM:13589-13808(+)$1	219	172	175	9.0000
AUC	chrM:11293-11498(+)$1	205	24	27	9.0000
AUC	chrM:13804-14076(+)$1	272	74	77	9.0000
AUC	chrM:13259-13474(+)$1	215	26	29	9.0000
AUC	chrM:10710-10950(+)$1	240	0	3	9.0000
AUC	chrM:8584-8794(+)$1	210	9	12	9.0000
AUC	chrM:14211-14484(-)$1	273	42	45	9.0000
AUC	chrM:11657-11868(+)$1	211	9	12	9.0000
AUC	chrM:10803-11027(+)$1	224	29	32	9.0000
AUC	chrM:7778-7983(+)$1	205	6	9	9.0000
AUC	chrM:6535-6761(+)$1	226	107	110	9.0000
AUC	chrM:7844-8049(+)$1	205	16	19	9.0000
AUC	chrM:13398-13610(+)$1	212	121	124	9.0000
AUC	chr5:93905064-93905317(-)$1	253	13	16	9.0000
AUC	chrM:15590-15813(+)$1	223	2	5	9.0000
AUC	chrM:9757-9977(+)$1	220	23	26	9.0000
AUC	chrM:12567-12821(+)$1	254	37	40	9.0000
AUC	chrM:8614-8840(+)$1	226	3	6	9.0000
AUC	chrM:9528-9752(+)$1	224	39	42	9.0000
AUC	chrM:8440-8658(+)$1	218	97	100	9.0000
AUC	chrM:6439-6675(+)$1	236	22	25	9.0000
AUC	chr5:134263533-134263776(-)$1	243	0	3	9.0000
AUC	chrM:9744-9957(+)$1	213	36	39	9.0000
AUC	chrM:9033-9282(+)$1	249	36	39	9.0000
AUC	chr19:34882781-34883081(+)$1	300	24	27	9.0000
auc	chrX:68892265-68892478(+)$1	213	88	91	9.0000
AUC	chrM:13947-14170(+)$1	223	5	8	9.0000
AUC	chrM:6484-6705(+)$1	221	10	13	9.0000
AUC	chrM:4584-4823(+)$1	239	54	57	9.0000
AUC	chrM:10750-10956(+)$1	206	82	85	9.0000
AUC	chrM:9484-9706(+)$1	222	83	86	9.0000
AUC	chrM:8594-8814(+)$1	220	23	26	9.0000
AUC	chrM:7789-7993(+)$1	204	7	10	9.0000
AUC	chrM:11032-11262(+)$1	230	37	40	9.0000

#otherMatches

#Struct PSSM
:::	chrM:10795-11002(+)$1	207	37	40	9.0000
##e	chrM:7211-7448(+)$1	237	46	49	9.0000
:::	chrM:10869-11084(+)$1	215	23	26	9.0000
sss	chrM:4819-5046(+)$1	227	25	28	9.0000
##e	chrM:7248-7452(+)$1	204	9	12	9.0000
:::	chrM:4318-4544(+)$1	226	25	28	9.0000
JJJ	chr19:34883337-34883586(+)$1	249	15	18	9.0000
:::	chr1:568952-569203(+)$1	251	28	31	9.0000
:::	chrM:10827-11055(+)$1	228	5	8	9.0000
qqq	chrM:9506-9728(+)$1	222	61	64	9.0000
^^^	chrM:9783-10002(+)$1	219	72	75	9.0000
:::	chrM:7910-8119(+)$1	209	140	143	9.0000
:::	chrM:10146-10373(+)$1	227	11	14	9.0000
qqq	chr16:10816694-10816927(-)$1	233	68	71	9.0000
:::	chrM:7783-7989(+)$1	206	1	4	9.0000
:::	chrM:10187-10394(+)$1	207	3	6	9.0000
)))	chr19:893453-893685(+)$1	232	170	173	9.0000
cc+	chrM:10131-10346(+)$1	215	26	29	9.0000
:::	chrM:10791-10995(+)$1	204	41	44	9.0000
$$$	chrM:4623-4856(+)$1	233	15	18	9.0000
NNN	chrM:12510-12733(+)$1	223	13	16	9.0000
ppp	chr5:134262633-134262925(-)$1	292	21	24	9.0000
vvv	chrM:10173-10380(+)$1	207	17	20	9.0000
:::	chrM:13375-13593(+)$1	218	0	3	9.0000
:::	chrM:10180-10387(+)$1	207	10	13	9.0000
:::	chrM:13608-13840(+)$1	232	153	156	9.0000
NNN	chrM:13305-13575(+)$1	270	16	19	9.0000
+++	chrM:8544-8784(+)$1	240	22	25	9.0000
FFF	chrM:9828-10035(+)$1	207	27	30	9.0000
^^^	chrM:11267-11493(+)$1	226	50	53	9.0000
ooo	chrM:8510-8744(+)$1	234	27	30	9.0000
HHH	chr19:34882471-34882704(+)$1	233	1	4	9.0000
5ee	chrM:7757-7978(+)$1	221	27	30	9.0000
^^^	chrM:13393-13598(+)$1	205	126	129	9.0000
::D	chrM:4192-4430(+)$1	238	45	48	9.0000
:::	chrM:15708-15927(+)$1	219	4	7	9.0000
^^^	chrM:13437-13679(+)$1	242	82	85	9.0000
fff	chrM:14383-14601(-)$1	218	159	162	9.0000
ggg	chrM:12622-12862(+)$1	240	12	15	9.0000
GGG	chr19:34882054-34882332(+)$1	278	67	70	9.0000
yyy	chrM:6584-6793(+)$1	209	58	61	9.0000
{BB	chr19:34882314-34882569(+)$1	255	8	11	9.0000
ooo	chrM:8437-8640(+)$1	203	100	103	9.0000
)bb	chrM:14361-14583(-)$1	222	141	144	9.0000
&&&	chrM:13171-13415(+)$1	244	12	15	9.0000
JJJ	chrM:4846-5085(+)$1	239	38	41	9.0000
GG:	chrM:10756-10982(+)$1	226	109	112	9.0000
FFF	chrM:9802-10028(+)$1	226	53	56	9.0000
duu	chrM:14969-15216(+)$1	247	9	12	9.0000
EE:	chrM:11298-11517(+)$1	219	19	22	9.0000
yyy	chrM:6564-6772(+)$1	208	78	81	9.0000
::C	chrM:15404-15625(+)$1	221	18	21	9.0000
:::	chrM:15031-15244(+)$1	213	7	10	9.0000
xxx	chrM:6475-6684(+)$1	209	19	22	9.0000
:::	chrM:15016-15231(+)$1	215	4	7	9.0000
:::	chrM:6514-6735(+)$1	221	5	8	9.0000
:bb	chr3:25508894-25509134(+)$1	240	7	10	9.0000
:::	chrM:15061-15268(+)$1	207	0	3	9.0000
:::	chrM:15425-15658(+)$1	233	123	126	9.0000
DDD	chrM:7869-8109(+)$1	240	5	8	9.0000
:::	chrM:491-727(+)$1	236	13	16	9.0000
NNN	chrM:12501-12710(+)$1	209	22	25	9.0000
EEM	chrM:6799-7050(+)$1	251	35	38	9.0000
GGG	chrM:9779-9983(+)$1	204	1	4	9.0000
:::	chrM:13589-13808(+)$1	219	172	175	9.0000
EE:	chrM:11293-11498(+)$1	205	24	27	9.0000
ii"	chrM:13804-14076(+)$1	272	74	77	9.0000
:::	chrM:13259-13474(+)$1	215	26	29	9.0000
:::	chrM:10710-10950(+)$1	240	0	3	9.0000
eee	chrM:8584-8794(+)$1	210	9	12	9.0000
{EE	chrM:14211-14484(-)$1	273	42	45	9.0000
EEE	chrM:11657-11868(+)$1	211	9	12	9.0000
:::	chrM:10803-11027(+)$1	224	29	32	9.0000
:::	chrM:7778-7983(+)$1	205	6	9	9.0000
yyy	chrM:6535-6761(+)$1	226	107	110	9.0000
rrr	chrM:7844-8049(+)$1	205	16	19	9.0000
^^^	chrM:13398-13610(+)$1	212	121	124	9.0000
iii	chr5:93905064-93905317(-)$1	253	13	16	9.0000
:::	chrM:15590-15813(+)$1	223	2	5	9.0000
HHH	chrM:9757-9977(+)$1	220	23	26	9.0000
::b	chrM:12567-12821(+)$1	254	37	40	9.0000
:::	chrM:8614-8840(+)$1	226	3	6	9.0000
qqq	chrM:9528-9752(+)$1	224	39	42	9.0000
ooo	chrM:8440-8658(+)$1	218	97	100	9.0000
:::	chrM:6439-6675(+)$1	236	22	25	9.0000
:::	chr5:134263533-134263776(-)$1	243	0	3	9.0000
HHH	chrM:9744-9957(+)$1	213	36	39	9.0000
$cc	chrM:9033-9282(+)$1	249	36	39	9.0000
ggg	chr19:34882781-34883081(+)$1	300	24	27	9.0000
ddd	chrX:68892265-68892478(+)$1	213	88	91	9.0000
:::	chrM:13947-14170(+)$1	223	5	8	9.0000
:::	chrM:6484-6705(+)$1	221	10	13	9.0000
$$$	chrM:4584-4823(+)$1	239	54	57	9.0000
:::	chrM:10750-10956(+)$1	206	82	85	9.0000
]cc	chrM:9484-9706(+)$1	222	83	86	9.0000
:::	chrM:8594-8814(+)$1	220	23	26	9.0000
:::	chrM:7789-7993(+)$1	204	7	10	9.0000
:::	chrM:11032-11262(+)$1	230	37	40	9.0000

#DB
...	chrM:10795-11002(+)$1	1	37	40	9.0000
..(	chrM:7211-7448(+)$1	1	46	49	9.0000
...	chrM:10869-11084(+)$1	1	23	26	9.0000
...	chrM:4819-5046(+)$1	1	25	28	9.0000
..(	chrM:7248-7452(+)$1	1	9	12	9.0000
...	chrM:4318-4544(+)$1	1	25	28	9.0000
(((	chr19:34883337-34883586(+)$1	1	15	18	9.0000
...	chr1:568952-569203(+)$1	1	28	31	9.0000
...	chrM:10827-11055(+)$1	1	5	8	9.0000
...	chrM:9506-9728(+)$1	1	61	64	9.0000
...	chrM:9783-10002(+)$1	1	72	75	9.0000
...	chrM:7910-8119(+)$1	1	140	143	9.0000
...	chrM:10146-10373(+)$1	1	11	14	9.0000
...	chr16:10816694-10816927(-)$1	1	68	71	9.0000
...	chrM:7783-7989(+)$1	1	1	4	9.0000
...	chrM:10187-10394(+)$1	1	3	6	9.0000
...	chr19:893453-893685(+)$1	1	170	173	9.0000
((.	chrM:10131-10346(+)$1	1	26	29	9.0000
...	chrM:10791-10995(+)$1	1	41	44	9.0000
...	chrM:4623-4856(+)$1	1	15	18	9.0000
...	chrM:12510-12733(+)$1	1	13	16	9.0000
...	chr5:134262633-134262925(-)$1	1	21	24	9.0000
...	chrM:10173-10380(+)$1	1	17	20	9.0000
...	chrM:13375-13593(+)$1	1	0	3	9.0000
...	chrM:10180-10387(+)$1	1	10	13	9.0000
...	chrM:13608-13840(+)$1	1	153	156	9.0000
...	chrM:13305-13575(+)$1	1	16	19	9.0000
...	chrM:8544-8784(+)$1	1	22	25	9.0000
(((	chrM:9828-10035(+)$1	1	27	30	9.0000
...	chrM:11267-11493(+)$1	1	50	53	9.0000
...	chrM:8510-8744(+)$1	1	27	30	9.0000
(((	chr19:34882471-34882704(+)$1	1	1	4	9.0000
.))	chrM:7757-7978(+)$1	1	27	30	9.0000
...	chrM:13393-13598(+)$1	1	126	129	9.0000
..(	chrM:4192-4430(+)$1	1	45	48	9.0000
...	chrM:15708-15927(+)$1	1	4	7	9.0000
...	chrM:13437-13679(+)$1	1	82	85	9.0000
)))	chrM:14383-14601(-)$1	1	159	162	9.0000
(((	chrM:12622-12862(+)$1	1	12	15	9.0000
(((	chr19:34882054-34882332(+)$1	1	67	70	9.0000
...	chrM:6584-6793(+)$1	1	58	61	9.0000
.((	chr19:34882314-34882569(+)$1	1	8	11	9.0000
...	chrM:8437-8640(+)$1	1	100	103	9.0000
.((	chrM:14361-14583(-)$1	1	141	144	9.0000
...	chrM:13171-13415(+)$1	1	12	15	9.0000
(((	chrM:4846-5085(+)$1	1	38	41	9.0000
)).	chrM:10756-10982(+)$1	1	109	112	9.0000
(((	chrM:9802-10028(+)$1	1	53	56	9.0000
(..	chrM:14969-15216(+)$1	1	9	12	9.0000
((.	chrM:11298-11517(+)$1	1	19	22	9.0000
...	chrM:6564-6772(+)$1	1	78	81	9.0000
..(	chrM:15404-15625(+)$1	1	18	21	9.0000
...	chrM:15031-15244(+)$1	1	7	10	9.0000
...	chrM:6475-6684(+)$1	1	19	22	9.0000
...	chrM:15016-15231(+)$1	1	4	7	9.0000
...	chrM:6514-6735(+)$1	1	5	8	9.0000
.((	chr3:25508894-25509134(+)$1	1	7	10	9.0000
...	chrM:15061-15268(+)$1	1	0	3	9.0000
...	chrM:15425-15658(+)$1	1	123	126	9.0000
(((	chrM:7869-8109(+)$1	1	5	8	9.0000
...	chrM:491-727(+)$1	1	13	16	9.0000
...	chrM:12501-12710(+)$1	1	22	25	9.0000
((.	chrM:6799-7050(+)$1	1	35	38	9.0000
(((	chrM:9779-9983(+)$1	1	1	4	9.0000
...	chrM:13589-13808(+)$1	1	172	175	9.0000
((.	chrM:11293-11498(+)$1	1	24	27	9.0000
((.	chrM:13804-14076(+)$1	1	74	77	9.0000
...	chrM:13259-13474(+)$1	1	26	29	9.0000
...	chrM:10710-10950(+)$1	1	0	3	9.0000
(((	chrM:8584-8794(+)$1	1	9	12	9.0000
.((	chrM:14211-14484(-)$1	1	42	45	9.0000
(((	chrM:11657-11868(+)$1	1	9	12	9.0000
...	chrM:10803-11027(+)$1	1	29	32	9.0000
...	chrM:7778-7983(+)$1	1	6	9	9.0000
...	chrM:6535-6761(+)$1	1	107	110	9.0000
...	chrM:7844-8049(+)$1	1	16	19	9.0000
...	chrM:13398-13610(+)$1	1	121	124	9.0000
(((	chr5:93905064-93905317(-)$1	1	13	16	9.0000
...	chrM:15590-15813(+)$1	1	2	5	9.0000
(((	chrM:9757-9977(+)$1	1	23	26	9.0000
..(	chrM:12567-12821(+)$1	1	37	40	9.0000
...	chrM:8614-8840(+)$1	1	3	6	9.0000
...	chrM:9528-9752(+)$1	1	39	42	9.0000
...	chrM:8440-8658(+)$1	1	97	100	9.0000
...	chrM:6439-6675(+)$1	1	22	25	9.0000
...	chr5:134263533-134263776(-)$1	1	0	3	9.0000
(((	chrM:9744-9957(+)$1	1	36	39	9.0000
.((	chrM:9033-9282(+)$1	1	36	39	9.0000
(((	chr19:34882781-34883081(+)$1	1	24	27	9.0000
(((	chrX:68892265-68892478(+)$1	1	88	91	9.0000
...	chrM:13947-14170(+)$1	1	5	8	9.0000
...	chrM:6484-6705(+)$1	1	10	13	9.0000
...	chrM:4584-4823(+)$1	1	54	57	9.0000
...	chrM:10750-10956(+)$1	1	82	85	9.0000
.))	chrM:9484-9706(+)$1	1	83	86	9.0000
...	chrM:8594-8814(+)$1	1	23	26	9.0000
...	chrM:7789-7993(+)$1	1	7	10	9.0000
...	chrM:11032-11262(+)$1	1	37	40	9.0000

#PSSM
A : 0.95	a : 0.04	
U : 0.95	u : 0.04	
C : 0.95	c : 0.04	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_transcript_m1_run2.nuc.txt

#NT
CUGGG	chr19:3389423-3389673(+)$1	250	48	53	14.9999
CUGGG	chr16:81576466-81576793(+)$1	327	114	119	14.9999
CUGGG	chr7:1498929-1499170(-)$1	241	76	81	14.9999
CUGGG	chr16:85671799-85672036(+)$1	237	47	52	14.9999
CUGGG	chr1:54820385-54820628(-)$1	243	58	63	14.9999
CUGGG	chrX:129117108-129117442(+)$1	334	102	107	14.9999
CUGGG	chr10:126745842-126746096(-)$1	254	17	22	14.9999
CUGGG	chr16:70471700-70471954(-)$1	254	76	81	14.9999
CUGGG	chr21:46943566-46943803(-)$1	237	171	176	14.9999
CUGGG	chr19:45633183-45633495(+)$1	312	7	12	14.9999
cuggg	chr6:158993457-158993712(+)$1	255	109	114	14.9999
CUGGG	chr19:2138059-2138323(-)$1	264	16	21	14.9999
CUGGG	chr11:63912241-63912492(-)$1	251	62	67	14.9999
CUGGG	chr7:1893062-1893326(-)$1	264	3	8	14.9999
CUGGG	chr19:1274975-1275260(+)$1	285	133	138	14.9999
CUGGG	chr16:88826805-88827083(-)$1	278	1	6	14.9999
CUGGG	chr19:2135720-2135996(-)$1	276	0	5	14.9999
CUGGG	chr22:49908146-49908458(-)$1	312	93	98	14.9999
CUGGG	chr19:1841472-1841698(-)$1	226	147	152	14.9999
CUGGG	chr10:6211507-6211756(+)$1	249	14	19	14.9999
CUGGG	chr12:31478300-31478602(-)$1	302	256	261	14.9999
CUGGG	chr12:132215772-132216082(+)$1	310	208	213	14.9999
CUGGG	chr8:141614064-141614368(-)$1	304	172	177	14.9999
CUGGG	chr16:87781213-87781470(-)$1	257	232	237	14.9999
cuggg	chr22:20003836-20004117(-)$1	281	44	49	14.9999
CUGGG	chr22:23625014-23625263(+)$1	249	17	22	14.9999
CUGGG	chr19:36516911-36517184(+)$1	273	117	122	14.9999
CUGGG	chr10:126732784-126733066(-)$1	282	80	85	14.9999
CUGGG	chr2:97534824-97535102(-)$1	278	101	106	14.9999
CUGGG	chr6:157342401-157342657(+)$1	256	129	134	14.9999
CUGGG	chr22:20041751-20042012(+)$1	261	18	23	14.9999
CUGGG	chr17:79879729-79879933(-)$1	204	1	6	14.9999
CUGGG	chr6:52227658-52227944(+)$1	286	86	91	14.9999
CUGGG	chr19:39138501-39138772(+)$1	271	24	29	14.9999
CUGGG	chr11:892485-892741(-)$1	256	26	31	14.9999
CUGGG	chr15:69110920-69111202(-)$1	282	15	20	14.9999
CUGGG	chr19:2782785-2783082(-)$1	297	140	145	14.9999
CUGGG	chr16:85685138-85685387(+)$1	249	22	27	14.9999
CUGGG	chr7:106809949-106810216(+)$1	267	189	194	14.9999
CUGGG	chr16:70461758-70462023(-)$1	265	77	82	14.9999
CUGGG	chr3:128216497-128216740(+)$1	243	22	27	14.9999
CUGGG	chr17:64536687-64536986(+)$1	299	54	59	14.9999
cuggg	chr16:85211875-85212142(+)$1	267	151	156	14.9999
CUGGG	chr16:89369171-89369414(-)$1	243	91	96	14.9999
CUGGG	chr12:98910037-98910276(+)$1	239	109	114	14.9999
CUGGG	chr9:131466038-131466313(+)$1	275	23	28	14.9999
CUGGG	chr11:486389-486633(+)$1	244	50	55	14.9999
CUGGG	chr4:893085-893369(-)$1	284	22	27	14.9999
CUGGG	chr2:172380136-172380393(+)$1	257	34	39	14.9999
CUGGG	chr22:50627270-50627519(+)$1	249	99	104	14.9999
CUGGG	chr1:6265195-6265446(-)$1	251	147	152	14.9999
CUGGG	chr5:662002-662243(+)$1	241	17	22	14.9999
CUGGG	chr19:15441963-15442178(-)$1	215	159	164	14.9999
CUGGG	chr11:65194866-65195098(+)$1	232	152	157	14.9999
CUGGG	chr3:126718932-126719199(+)$1	267	58	63	14.9999
CUGGG	chr19:50379639-50379902(-)$1	263	109	114	14.9999
CUGGG	chr20:55968794-55969022(+)$1	228	19	24	14.9999
CUGGG	chr16:1362457-1362706(+)$1	249	42	47	14.9999
CUGGG	chr2:172016441-172016691(-)$1	250	50	55	14.9999
CUGGG	chr7:2188467-2188746(-)$1	279	84	89	14.9999
CUGGG	chr22:49993548-49993826(-)$1	278	62	67	14.9999
CUGGG	chr15:66913755-66914040(+)$1	285	261	266	14.9999
CUGGG	chr16:89005612-89005849(-)$1	237	62	67	14.9999
CUGGG	chr16:88547235-88547480(+)$1	245	121	126	14.9999
CUGGG	chr15:66892462-66892751(+)$1	289	14	19	14.9999
CUGGG	chr22:32022689-32022949(-)$1	260	77	82	14.9999
CUGGG	chr20:61557150-61557442(-)$1	292	5	10	14.9999
CUGGG	chr16:88569833-88570078(+)$1	245	28	33	14.9999
CUGGG	chr11:66393977-66394232(+)$1	255	169	174	14.9999
CUGGG	chr9:140683061-140683355(+)$1	294	26	31	14.9999
CUGGG	chr19:45619232-45619523(+)$1	291	61	66	14.9999
CUGGG	chr1:182360559-182360867(-)$1	308	290	295	14.9999
CUGGG	chr8:61592447-61592706(+)$1	259	38	43	14.9999

#otherMatches

#Struct PSSM
HHCCC	chr22:19492610-19492912(+)$1	302	103	108	14.9999
FFFFF	chr19:3389423-3389673(+)$1	250	48	53	14.9999
fffdd	chr16:81576466-81576793(+)$1	327	114	119	14.9999
cceee	chr7:1498929-1499170(-)$1	241	76	81	14.9999
GGGGG	chr16:85671799-85672036(+)$1	237	47	52	14.9999
vvvvv	chr1:54820385-54820628(-)$1	243	58	63	14.9999
ggggg	chrX:129117108-129117442(+)$1	334	102	107	14.9999
=====	chr10:126745842-126746096(-)$1	254	17	22	14.9999
eeeee	chr16:70471700-70471954(-)$1	254	76	81	14.9999
}BB}F	chr21:46943566-46943803(-)$1	237	171	176	14.9999
JJJJJ	chr19:45633183-45633495(+)$1	312	7	12	14.9999
e]ccc	chr6:158993457-158993712(+)$1	255	109	114	14.9999
D{HHH	chr19:2138059-2138323(-)$1	264	16	21	14.9999
eeeee	chr11:63912241-63912492(-)$1	251	62	67	14.9999
GGGGL	chr7:1893062-1893326(-)$1	264	3	8	14.9999
dd!!g	chr19:1274975-1275260(+)$1	285	133	138	14.9999
CC{BB	chr16:88826805-88827083(-)$1	278	1	6	14.9999
:eeee	chr19:2135720-2135996(-)$1	276	0	5	14.9999
dffff	chr22:49908146-49908458(-)$1	312	93	98	14.9999
fffff	chr19:1841472-1841698(-)$1	226	147	152	14.9999
GGGGG	chr10:6211507-6211756(+)$1	249	14	19	14.9999
JJJJJ	chr12:31478300-31478602(-)$1	302	256	261	14.9999
ggggg	chr12:132215772-132216082(+)$1	310	208	213	14.9999
ggghh	chr8:141614064-141614368(-)$1	304	172	177	14.9999
=:::D	chr16:87781213-87781470(-)$1	257	232	237	14.9999
IIDDD	chr22:20003836-20004117(-)$1	281	44	49	14.9999
gnnnn	chr22:23625014-23625263(+)$1	249	17	22	14.9999
ddd[b	chr19:36516911-36517184(+)$1	273	117	122	14.9999
eeecc	chr10:126732784-126733066(-)$1	282	80	85	14.9999
ooohh	chr2:97534824-97535102(-)$1	278	101	106	14.9999
E}GGG	chr6:157342401-157342657(+)$1	256	129	134	14.9999
ddd[b	chr22:20041751-20042012(+)$1	261	18	23	14.9999
::FFF	chr17:79879729-79879933(-)$1	204	1	6	14.9999
dddd[	chr6:52227658-52227944(+)$1	286	86	91	14.9999
CC{HH	chr19:39138501-39138772(+)$1	271	24	29	14.9999
ggg[b	chr11:892485-892741(-)$1	256	26	31	14.9999
fffff	chr15:69110920-69111202(-)$1	282	15	20	14.9999
ll===	chr19:2782785-2783082(-)$1	297	140	145	14.9999
DDEEE	chr16:85685138-85685387(+)$1	249	22	27	14.9999
mmmcc	chr7:106809949-106810216(+)$1	267	189	194	14.9999
=="""	chr16:70461758-70462023(-)$1	265	77	82	14.9999
b[ccc	chr3:128216497-128216740(+)$1	243	22	27	14.9999
nnnee	chr17:64536687-64536986(+)$1	299	54	59	14.9999
!ccc[	chr16:85211875-85212142(+)$1	267	151	156	14.9999
FFFFF	chr16:89369171-89369414(-)$1	243	91	96	14.9999
eehhh	chr12:98910037-98910276(+)$1	239	109	114	14.9999
!!ddd	chr9:131466038-131466313(+)$1	275	23	28	14.9999
[ffff	chr11:486389-486633(+)$1	244	50	55	14.9999
MMCCC	chr4:893085-893369(-)$1	284	22	27	14.9999
coooo	chr2:172380136-172380393(+)$1	257	34	39	14.9999
D{BB{	chr22:50627270-50627519(+)$1	249	99	104	14.9999
fffff	chr1:6265195-6265446(-)$1	251	147	152	14.9999
IIIII	chr5:662002-662243(+)$1	241	17	22	14.9999
CDDDD	chr19:15441963-15442178(-)$1	215	159	164	14.9999
d22ad	chr11:65194866-65195098(+)$1	232	152	157	14.9999
hhhhh	chr3:126718932-126719199(+)$1	267	58	63	14.9999
DDDD{	chr19:50379639-50379902(-)$1	263	109	114	14.9999
MMHHH	chr20:55968794-55969022(+)$1	228	19	24	14.9999
ssa]g	chr16:1362457-1362706(+)$1	249	42	47	14.9999
d:ddd	chr2:172016441-172016691(-)$1	250	50	55	14.9999
IIIII	chr7:2188467-2188746(-)$1	279	84	89	14.9999
IIII{	chr22:49993548-49993826(-)$1	278	62	67	14.9999
BGGGG	chr15:66913755-66914040(+)$1	285	261	266	14.9999
hh:BB	chr16:89005612-89005849(-)$1	237	62	67	14.9999
c[ddd	chr16:88547235-88547480(+)$1	245	121	126	14.9999
ggggg	chr15:66892462-66892751(+)$1	289	14	19	14.9999
cc[cc	chr22:32022689-32022949(-)$1	260	77	82	14.9999
FMMMM	chr20:61557150-61557442(-)$1	292	5	10	14.9999
IIIII	chr16:88569833-88570078(+)$1	245	28	33	14.9999
:DDDD	chr11:66393977-66394232(+)$1	255	169	174	14.9999
e]fff	chr9:140683061-140683355(+)$1	294	26	31	14.9999
bb[ee	chr19:45619232-45619523(+)$1	291	61	66	14.9999
YYA}A	chr1:182360559-182360867(-)$1	308	290	295	14.9999
eeeee	chr8:61592447-61592706(+)$1	259	38	43	14.9999

#DB
(((((	chr22:19492610-19492912(+)$1	1	103	108	14.9999
(((((	chr19:3389423-3389673(+)$1	1	48	53	14.9999
)))((	chr16:81576466-81576793(+)$1	1	114	119	14.9999
))(((	chr7:1498929-1499170(-)$1	1	76	81	14.9999
(((((	chr16:85671799-85672036(+)$1	1	47	52	14.9999
.....	chr1:54820385-54820628(-)$1	1	58	63	14.9999
)))))	chrX:129117108-129117442(+)$1	1	102	107	14.9999
(((((	chr10:126745842-126746096(-)$1	1	17	22	14.9999
(((((	chr16:70471700-70471954(-)$1	1	76	81	14.9999
.)).)	chr21:46943566-46943803(-)$1	1	171	176	14.9999
(((((	chr19:45633183-45633495(+)$1	1	7	12	14.9999
).)))	chr6:158993457-158993712(+)$1	1	109	114	14.9999
(.(((	chr19:2138059-2138323(-)$1	1	16	21	14.9999
(((((	chr11:63912241-63912492(-)$1	1	62	67	14.9999
((((.	chr7:1893062-1893326(-)$1	1	3	8	14.9999
((..(	chr19:1274975-1275260(+)$1	1	133	138	14.9999
((.((	chr16:88826805-88827083(-)$1	1	1	6	14.9999
.((((	chr19:2135720-2135996(-)$1	1	0	5	14.9999
(((((	chr22:49908146-49908458(-)$1	1	93	98	14.9999
)))))	chr19:1841472-1841698(-)$1	1	147	152	14.9999
(((((	chr10:6211507-6211756(+)$1	1	14	19	14.9999
)))))	chr12:31478300-31478602(-)$1	1	256	261	14.9999
(((((	chr12:132215772-132216082(+)$1	1	208	213	14.9999
)))))	chr8:141614064-141614368(-)$1	1	172	177	14.9999
)...)	chr16:87781213-87781470(-)$1	1	232	237	14.9999
(((((	chr22:20003836-20004117(-)$1	1	44	49	14.9999
(....	chr22:23625014-23625263(+)$1	1	17	22	14.9999
(((.(	chr19:36516911-36517184(+)$1	1	117	122	14.9999
)))((	chr10:126732784-126733066(-)$1	1	80	85	14.9999
...))	chr2:97534824-97535102(-)$1	1	101	106	14.9999
).)))	chr6:157342401-157342657(+)$1	1	129	134	14.9999
(((.(	chr22:20041751-20042012(+)$1	1	18	23	14.9999
..(((	chr17:79879729-79879933(-)$1	1	1	6	14.9999
((((.	chr6:52227658-52227944(+)$1	1	86	91	14.9999
((.((	chr19:39138501-39138772(+)$1	1	24	29	14.9999
(((.(	chr11:892485-892741(-)$1	1	26	31	14.9999
)))))	chr15:69110920-69111202(-)$1	1	15	20	14.9999
..)))	chr19:2782785-2783082(-)$1	1	140	145	14.9999
(((((	chr16:85685138-85685387(+)$1	1	22	27	14.9999
...))	chr7:106809949-106810216(+)$1	1	189	194	14.9999
((...	chr16:70461758-70462023(-)$1	1	77	82	14.9999
(.(((	chr3:128216497-128216740(+)$1	1	22	27	14.9999
...))	chr17:64536687-64536986(+)$1	1	54	59	14.9999
.(((.	chr16:85211875-85212142(+)$1	1	151	156	14.9999
(((((	chr16:89369171-89369414(-)$1	1	91	96	14.9999
(((((	chr12:98910037-98910276(+)$1	1	109	114	14.9999
..(((	chr9:131466038-131466313(+)$1	1	23	28	14.9999
.((((	chr11:486389-486633(+)$1	1	50	55	14.9999
..(((	chr4:893085-893369(-)$1	1	22	27	14.9999
(....	chr2:172380136-172380393(+)$1	1	34	39	14.9999
(.((.	chr22:50627270-50627519(+)$1	1	99	104	14.9999
)))))	chr1:6265195-6265446(-)$1	1	147	152	14.9999
(((((	chr5:662002-662243(+)$1	1	17	22	14.9999
)))))	chr19:15441963-15442178(-)$1	1	159	164	14.9999
)..))	chr11:65194866-65195098(+)$1	1	152	157	14.9999
)))))	chr3:126718932-126719199(+)$1	1	58	63	14.9999
((((.	chr19:50379639-50379902(-)$1	1	109	114	14.9999
..(((	chr20:55968794-55969022(+)$1	1	19	24	14.9999
..).)	chr16:1362457-1362706(+)$1	1	42	47	14.9999
).(((	chr2:172016441-172016691(-)$1	1	50	55	14.9999
(((((	chr7:2188467-2188746(-)$1	1	84	89	14.9999
((((.	chr22:49993548-49993826(-)$1	1	62	67	14.9999
)))))	chr15:66913755-66914040(+)$1	1	261	266	14.9999
)).((	chr16:89005612-89005849(-)$1	1	62	67	14.9999
(.(((	chr16:88547235-88547480(+)$1	1	121	126	14.9999
(((((	chr15:66892462-66892751(+)$1	1	14	19	14.9999
((.((	chr22:32022689-32022949(-)$1	1	77	82	14.9999
(....	chr20:61557150-61557442(-)$1	1	5	10	14.9999
(((((	chr16:88569833-88570078(+)$1	1	28	33	14.9999
.))))	chr11:66393977-66394232(+)$1	1	169	174	14.9999
).)))	chr9:140683061-140683355(+)$1	1	26	31	14.9999
((.((	chr19:45619232-45619523(+)$1	1	61	66	14.9999
..).)	chr1:182360559-182360867(-)$1	1	290	295	14.9999
(((((	chr8:61592447-61592706(+)$1	1	38	43	14.9999

#PSSM
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	
G : 0.95	g : 0.04	

#score	1109.9999999999995
#seq	74
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_UTR_m1_run2.nuc.txt

#NT
UUUUUU	chr17:74731506-74731737(-)$1	231	97	103	17.9999
UUUUUU	chr20:43955076-43955302(-)$1	226	64	70	17.9999
UUUUUU	chr11:130014460-130014734(+)$1	274	99	105	17.9999
UUUUUU	chr7:5566784-5567003(-)$1	219	22	28	17.9999
UUUUUU	chr14:70238183-70238420(+)$1	237	21	27	17.9999
uuuuuu	chr17:18111741-18112052(+)$1	311	67	73	17.9999
uuuuuu	chr20:10619516-10619733(-)$1	217	66	72	17.9999
UUUUUU	chr3:186507440-186507709(+)$1	269	43	49	17.9999
UUUUUU	chr18:9954141-9954394(+)$1	253	92	98	17.9999
UUUUUU	chr17:55757038-55757327(+)$1	289	260	266	17.9999
UUUUUU	chr17:37009870-37010081(-)$1	211	93	99	17.9999
UUUUUU	chr2:120129852-120130092(+)$1	240	98	104	17.9999
UUUUUU	chr12:122240353-122240615(-)$1	262	91	97	17.9999
UUUUUU	chr11:102267203-102267446(-)$1	243	2	8	17.9999
uuuuuu	chr5:132216268-132216532(-)$1	264	94	100	17.9999
UUUUUU	chr20:30783831-30784105(-)$1	274	97	103	17.9999
UUUUUU	chr8:22278809-22279027(+)$1	218	82	88	17.9999
UUUUUU	chr2:65495815-65496074(+)$1	259	91	97	17.9999
UUUUUU	chr14:21168390-21168630(+)$1	240	89	95	17.9999
UUUUUU	chr17:80572510-80572800(-)$1	290	26	32	17.9999
UUUUUU	chr1:169101380-169101660(+)$1	280	235	241	17.9999
UUUUUU	chr12:57628224-57628490(+)$1	266	2	8	17.9999
UUUUUU	chr6:64290986-64291198(+)$1	212	2	8	17.9999
UUUUUU	chr2:21224449-21224656(-)$1	207	55	61	17.9999
UUUUUU	chr3:10192214-10192460(+)$1	246	91	97	17.9999
UUUUUU	chr12:106632168-106632405(-)$1	237	21	27	17.9999
UUUUUU	chr3:13358785-13359070(-)$1	285	94	100	17.9999
UUUUUU	chr19:48886109-48886355(-)$1	246	2	8	17.9999
UUUUUU	chr1:32799371-32799616(-)$1	245	35	41	17.9999
UUUUUU	chr1:205683247-205683499(-)$1	252	93	99	17.9999
UUUUUU	chr2:85549638-85549884(-)$1	246	6	12	17.9999
UUUUUU	chr4:39500413-39500663(-)$1	250	10	16	17.9999
UUUUUU	chr10:35858103-35858353(+)$1	250	80	86	17.9999
UUUUUU	chr2:216225509-216225756(-)$1	247	96	102	17.9999
UUUUUU	chr2:191799705-191799985(+)$1	280	90	96	17.9999
UUUUUU	chr12:63037920-63038218(-)$1	298	127	133	17.9999
UUUUUU	chr3:190025437-190025680(-)$1	243	202	208	17.9999
UUUUUU	chr17:73163848-73164062(-)$1	214	98	104	17.9999
UUUUUU	chr4:17625631-17625918(+)$1	287	7	13	17.9999
UUUUUU	chr14:69846801-69847066(-)$1	265	8	14	17.9999
UUUUUU	chr4:79462218-79462522(+)$1	304	79	85	17.9999
UUUUUU	chr6:7251150-7251445(+)$1	295	122	128	17.9999
UUUUUU	chr4:166418720-166418966(+)$1	246	103	109	17.9999
UUUUUU	chr8:11701931-11702186(-)$1	255	99	105	17.9999
UUUUUU	chr19:13054725-13054988(+)$1	263	97	103	17.9999
UUUUUU	chr11:69468117-69468408(+)$1	291	60	66	17.9999
UUUUUU	chr15:69072024-69072306(-)$1	282	102	108	17.9999
uuuuuu	chr17:70121621-70121867(+)$1	246	74	80	17.9999
UUUUUU	chr12:120899676-120899892(-)$1	216	86	92	17.9999
UUUUUU	chr19:16212247-16212543(+)$1	296	96	102	17.9999
UUUUUU	chr4:110970488-110970764(-)$1	276	69	75	17.9999
uuuuuu	chr19:13054888-13055144(+)$1	256	15	21	17.9999
UUUUUU	chr7:6501320-6501595(-)$1	275	93	99	17.9999
UUUUUU	chr20:43954735-43954950(-)$1	215	2	8	17.9999
UUUUUU	chr3:13358707-13358978(-)$1	271	2	8	17.9999
UUUUUU	chr17:4848943-4849219(-)$1	276	103	109	17.9999
UUUUUU	chr10:73576909-73577158(-)$1	249	1	7	17.9999
UUUUUU	chr6:119500689-119500925(-)$1	236	155	161	17.9999
UUUUUU	chr10:43881535-43881772(-)$1	237	17	23	17.9999
UUUUUU	chr2:188329258-188329559(-)$1	301	30	36	17.9999
uuuuuu	chr20:61576781-61577035(+)$1	254	80	86	17.9999
uuuuuu	chr6:64290908-64291137(+)$1	229	19	25	17.9999
uuuuuu	chr19:18390715-18390967(-)$1	252	90	96	17.9999
UUUUUU	chr7:128411252-128411501(+)$1	249	81	87	17.9999
UUUUUU	chr19:13054818-13055088(+)$1	270	4	10	17.9999
UUUUUU	chr13:76432148-76432419(+)$1	271	17	23	17.9999
uuuuuu	chr2:85545102-85545387(-)$1	285	100	106	17.9999
UUUUUU	chr16:18803025-18803272(-)$1	247	87	93	17.9999
UUUUUU	chr1:182352044-182352290(-)$1	246	40	46	17.9999
UUUUUU	chr1:62146713-62146992(-)$1	279	66	72	17.9999
UUUUUU	chr7:94297106-94297340(+)$1	234	26	32	17.9999

#otherMatches

#Struct PSSM
JJJJJJ	chr12:104341398-104341611(+)$1	213	191	197	17.9999
eeeeem	chr17:74731506-74731737(-)$1	231	97	103	17.9999
ccnnnn	chr20:43955076-43955302(-)$1	226	64	70	17.9999
::::::	chr11:130014460-130014734(+)$1	274	99	105	17.9999
g^^^^^	chr7:5566784-5567003(-)$1	219	22	28	17.9999
======	chr14:70238183-70238420(+)$1	237	21	27	17.9999
::::::	chr17:18111741-18112052(+)$1	311	67	73	17.9999
^^^^^^	chr20:10619516-10619733(-)$1	217	66	72	17.9999
lllggg	chr3:186507440-186507709(+)$1	269	43	49	17.9999
::::::	chr18:9954141-9954394(+)$1	253	92	98	17.9999
::::::	chr17:55757038-55757327(+)$1	289	260	266	17.9999
dddd[d	chr17:37009870-37010081(-)$1	211	93	99	17.9999
ddd]ee	chr2:120129852-120130092(+)$1	240	98	104	17.9999
>>>>>>	chr12:122240353-122240615(-)$1	262	91	97	17.9999
hhhhhh	chr11:102267203-102267446(-)$1	243	2	8	17.9999
====]c	chr5:132216268-132216532(-)$1	264	94	100	17.9999
^^^^^^	chr20:30783831-30784105(-)$1	274	97	103	17.9999
======	chr8:22278809-22279027(+)$1	218	82	88	17.9999
xxxxxx	chr2:65495815-65496074(+)$1	259	91	97	17.9999
dd9999	chr14:21168390-21168630(+)$1	240	89	95	17.9999
hh^^^^	chr17:80572510-80572800(-)$1	290	26	32	17.9999
::::::	chr1:169101380-169101660(+)$1	280	235	241	17.9999
::::EE	chr12:57628224-57628490(+)$1	266	2	8	17.9999
::::::	chr6:64290986-64291198(+)$1	212	2	8	17.9999
::::::	chr2:21224449-21224656(-)$1	207	55	61	17.9999
fffeee	chr3:10192214-10192460(+)$1	246	91	97	17.9999
uuiiii	chr12:106632168-106632405(-)$1	237	21	27	17.9999
::::::	chr3:13358785-13359070(-)$1	285	94	100	17.9999
::::::	chr19:48886109-48886355(-)$1	246	2	8	17.9999
:GGGGG	chr1:32799371-32799616(-)$1	245	35	41	17.9999
errrrr	chr1:205683247-205683499(-)$1	252	93	99	17.9999
::::::	chr2:85549638-85549884(-)$1	246	6	12	17.9999
KA{JJJ	chr4:39500413-39500663(-)$1	250	10	16	17.9999
::::::	chr10:35858103-35858353(+)$1	250	80	86	17.9999
nnbb33	chr2:216225509-216225756(-)$1	247	96	102	17.9999
::::::	chr2:191799705-191799985(+)$1	280	90	96	17.9999
{HHHHH	chr12:63037920-63038218(-)$1	298	127	133	17.9999
^^^^^^	chr3:190025437-190025680(-)$1	243	202	208	17.9999
oooooo	chr17:73163848-73164062(-)$1	214	98	104	17.9999
fff&&&	chr4:17625631-17625918(+)$1	287	7	13	17.9999
::::::	chr14:69846801-69847066(-)$1	265	8	14	17.9999
fffffe	chr4:79462218-79462522(+)$1	304	79	85	17.9999
ddd!!b	chr6:7251150-7251445(+)$1	295	122	128	17.9999
999999	chr4:166418720-166418966(+)$1	246	103	109	17.9999
55555f	chr8:11701931-11702186(-)$1	255	99	105	17.9999
++++++	chr19:13054725-13054988(+)$1	263	97	103	17.9999
hhhhh[	chr11:69468117-69468408(+)$1	291	60	66	17.9999
======	chr15:69072024-69072306(-)$1	282	102	108	17.9999
oooiii	chr17:70121621-70121867(+)$1	246	74	80	17.9999
mmmddd	chr12:120899676-120899892(-)$1	216	86	92	17.9999
:::::H	chr19:16212247-16212543(+)$1	296	96	102	17.9999
^^^^^^	chr4:110970488-110970764(-)$1	276	69	75	17.9999
::::::	chr19:13054888-13055144(+)$1	256	15	21	17.9999
uuuuee	chr7:6501320-6501595(-)$1	275	93	99	17.9999
::::::	chr20:43954735-43954950(-)$1	215	2	8	17.9999
::::::	chr3:13358707-13358978(-)$1	271	2	8	17.9999
:::::d	chr17:4848943-4849219(-)$1	276	103	109	17.9999
JJJJJJ	chr10:73576909-73577158(-)$1	249	1	7	17.9999
::iiii	chr6:119500689-119500925(-)$1	236	155	161	17.9999
[ggggg	chr10:43881535-43881772(-)$1	237	17	23	17.9999
:::FFF	chr2:188329258-188329559(-)$1	301	30	36	17.9999
hhhttt	chr20:61576781-61577035(+)$1	254	80	86	17.9999
JJ::::	chr6:64290908-64291137(+)$1	229	19	25	17.9999
::====	chr19:18390715-18390967(-)$1	252	90	96	17.9999
oooooo	chr7:128411252-128411501(+)$1	249	81	87	17.9999
::::::	chr19:13054818-13055088(+)$1	270	4	10	17.9999
hhhhhh	chr13:76432148-76432419(+)$1	271	17	23	17.9999
>>>>>>	chr2:85545102-85545387(-)$1	285	100	106	17.9999
::iiii	chr16:18803025-18803272(-)$1	247	87	93	17.9999
ooofff	chr1:182352044-182352290(-)$1	246	40	46	17.9999
::::::	chr1:62146713-62146992(-)$1	279	66	72	17.9999
fffff!	chr7:94297106-94297340(+)$1	234	26	32	17.9999

#DB
))))))	chr12:104341398-104341611(+)$1	1	191	197	17.9999
(((((.	chr17:74731506-74731737(-)$1	1	97	103	17.9999
((....	chr20:43955076-43955302(-)$1	1	64	70	17.9999
......	chr11:130014460-130014734(+)$1	1	99	105	17.9999
(.....	chr7:5566784-5567003(-)$1	1	22	28	17.9999
((((((	chr14:70238183-70238420(+)$1	1	21	27	17.9999
......	chr17:18111741-18112052(+)$1	1	67	73	17.9999
......	chr20:10619516-10619733(-)$1	1	66	72	17.9999
...)))	chr3:186507440-186507709(+)$1	1	43	49	17.9999
......	chr18:9954141-9954394(+)$1	1	92	98	17.9999
......	chr17:55757038-55757327(+)$1	1	260	266	17.9999
((((.(	chr17:37009870-37010081(-)$1	1	93	99	17.9999
))).))	chr2:120129852-120130092(+)$1	1	98	104	17.9999
......	chr12:122240353-122240615(-)$1	1	91	97	17.9999
((((((	chr11:102267203-102267446(-)$1	1	2	8	17.9999
)))).)	chr5:132216268-132216532(-)$1	1	94	100	17.9999
......	chr20:30783831-30784105(-)$1	1	97	103	17.9999
))))))	chr8:22278809-22279027(+)$1	1	82	88	17.9999
......	chr2:65495815-65496074(+)$1	1	91	97	17.9999
))....	chr14:21168390-21168630(+)$1	1	89	95	17.9999
((....	chr17:80572510-80572800(-)$1	1	26	32	17.9999
......	chr1:169101380-169101660(+)$1	1	235	241	17.9999
....((	chr12:57628224-57628490(+)$1	1	2	8	17.9999
......	chr6:64290986-64291198(+)$1	1	2	8	17.9999
......	chr2:21224449-21224656(-)$1	1	55	61	17.9999
))))))	chr3:10192214-10192460(+)$1	1	91	97	17.9999
..))))	chr12:106632168-106632405(-)$1	1	21	27	17.9999
......	chr3:13358785-13359070(-)$1	1	94	100	17.9999
......	chr19:48886109-48886355(-)$1	1	2	8	17.9999
.(((((	chr1:32799371-32799616(-)$1	1	35	41	17.9999
(.....	chr1:205683247-205683499(-)$1	1	93	99	17.9999
......	chr2:85549638-85549884(-)$1	1	6	12	17.9999
.(.(((	chr4:39500413-39500663(-)$1	1	10	16	17.9999
......	chr10:35858103-35858353(+)$1	1	80	86	17.9999
..))..	chr2:216225509-216225756(-)$1	1	96	102	17.9999
......	chr2:191799705-191799985(+)$1	1	90	96	17.9999
.(((((	chr12:63037920-63038218(-)$1	1	127	133	17.9999
......	chr3:190025437-190025680(-)$1	1	202	208	17.9999
......	chr17:73163848-73164062(-)$1	1	98	104	17.9999
(((...	chr4:17625631-17625918(+)$1	1	7	13	17.9999
......	chr14:69846801-69847066(-)$1	1	8	14	17.9999
))))))	chr4:79462218-79462522(+)$1	1	79	85	17.9999
(((..(	chr6:7251150-7251445(+)$1	1	122	128	17.9999
......	chr4:166418720-166418966(+)$1	1	103	109	17.9999
.....)	chr8:11701931-11702186(-)$1	1	99	105	17.9999
......	chr19:13054725-13054988(+)$1	1	97	103	17.9999
(((((.	chr11:69468117-69468408(+)$1	1	60	66	17.9999
))))))	chr15:69072024-69072306(-)$1	1	102	108	17.9999
...)))	chr17:70121621-70121867(+)$1	1	74	80	17.9999
...)))	chr12:120899676-120899892(-)$1	1	86	92	17.9999
.....(	chr19:16212247-16212543(+)$1	1	96	102	17.9999
......	chr4:110970488-110970764(-)$1	1	69	75	17.9999
......	chr19:13054888-13055144(+)$1	1	15	21	17.9999
....))	chr7:6501320-6501595(-)$1	1	93	99	17.9999
......	chr20:43954735-43954950(-)$1	1	2	8	17.9999
......	chr3:13358707-13358978(-)$1	1	2	8	17.9999
.....(	chr17:4848943-4849219(-)$1	1	103	109	17.9999
((((((	chr10:73576909-73577158(-)$1	1	1	7	17.9999
..((((	chr6:119500689-119500925(-)$1	1	155	161	17.9999
.(((((	chr10:43881535-43881772(-)$1	1	17	23	17.9999
...(((	chr2:188329258-188329559(-)$1	1	30	36	17.9999
(((...	chr20:61576781-61577035(+)$1	1	80	86	17.9999
((....	chr6:64290908-64291137(+)$1	1	19	25	17.9999
..((((	chr19:18390715-18390967(-)$1	1	90	96	17.9999
......	chr7:128411252-128411501(+)$1	1	81	87	17.9999
......	chr19:13054818-13055088(+)$1	1	4	10	17.9999
((((((	chr13:76432148-76432419(+)$1	1	17	23	17.9999
......	chr2:85545102-85545387(-)$1	1	100	106	17.9999
..((((	chr16:18803025-18803272(-)$1	1	87	93	17.9999
...)))	chr1:182352044-182352290(-)$1	1	40	46	17.9999
......	chr1:62146713-62146992(-)$1	1	66	72	17.9999
(((((.	chr7:94297106-94297340(+)$1	1	26	32	17.9999

#PSSM
U : 0.87	u : 0.12	
U : 0.87	u : 0.12	
U : 0.87	u : 0.12	
U : 0.87	u : 0.12	
U : 0.87	u : 0.12	
U : 0.87	u : 0.12	

#score	1295.9999999999995
#seq	72
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_CDS_m3_run1.nuc.txt

#NT
CCUGG	chr14:102516332-102516556(+)$1	224	49	54	14.9999
ccugg	chr19:11256974-11257242(-)$1	268	76	81	14.9999
CCUGG	chr5:176798930-176799199(+)$1	269	16	21	14.9999
CCUGG	chr19:2427311-2427603(-)$1	292	237	242	14.9999
CCUGG	chr7:150840351-150840627(+)$1	276	12	17	14.9999
CCUGG	chr15:79214307-79214637(-)$1	330	126	131	14.9999
CCUGG	chr6:43196996-43197299(-)$1	303	74	79	14.9999
CCUGG	chrX:153609258-153609524(+)$1	266	61	66	14.9999
CCUGG	chr11:65357544-65357779(+)$1	235	60	65	14.9999
CCUGG	chr1:46035462-46035693(+)$1	231	39	44	14.9999
CCUGG	chr19:1271452-1271715(+)$1	263	249	254	14.9999
CCUGG	chr19:38797967-38798208(-)$1	241	98	103	14.9999
CCUGG	chr19:39405991-39406249(-)$1	258	42	47	14.9999
CCUGG	chr8:144890715-144890964(-)$1	249	25	30	14.9999
ccugg	chr8:30537050-30537286(-)$1	236	18	23	14.9999
CCUGG	chr6:2948694-2948938(-)$1	244	139	144	14.9999
CCUGG	chr20:32441250-32441584(+)$1	334	289	294	14.9999
CCUGG	chr20:2443181-2443420(-)$1	239	30	35	14.9999
CCUGG	chr22:21354900-21355138(-)$1	238	9	14	14.9999
CCUGG	chr19:41306416-41306667(+)$1	251	145	150	14.9999
CCUGG	chr9:131133551-131133788(+)$1	237	6	11	14.9999
CCUGG	chr3:184052587-184052844(+)$1	257	128	133	14.9999
CCUGG	chr9:139886990-139887244(+)$1	254	149	154	14.9999
CCUGG	chr17:76161965-76162259(+)$1	294	38	43	14.9999
CCUGG	chr17:79974722-79975013(+)$1	291	232	237	14.9999
CCUGG	chr9:139316182-139316410(+)$1	228	90	95	14.9999
CCUGG	chr11:65359572-65359817(+)$1	245	104	109	14.9999
CCUGG	chr20:32245495-32245745(-)$1	250	27	32	14.9999
CCUGG	chr16:30103974-30104217(-)$1	243	222	227	14.9999
CCUGG	chr19:49378970-49379289(+)$1	319	78	83	14.9999
CCUGG	chr19:1010685-1010917(-)$1	232	208	213	14.9999
CCUGG	chr22:38349618-38349915(+)$1	297	273	278	14.9999
CCUGG	chrX:153173170-153173499(-)$1	329	179	184	14.9999
CCUGG	chr9:140005110-140005334(-)$1	224	19	24	14.9999
CCUGG	chr22:38075509-38075751(+)$1	242	180	185	14.9999
CCUGG	chr2:74754498-74754727(-)$1	229	33	38	14.9999
CCUGG	chr15:75648143-75648402(-)$1	259	159	164	14.9999
CCUGG	chr16:88782774-88782991(-)$1	217	9	14	14.9999
CCUGG	chr13:27830295-27830536(+)$1	241	153	158	14.9999
CCUGG	chr17:79826504-79826751(-)$1	247	119	124	14.9999
CCUGG	chr11:64789185-64789462(+)$1	277	9	14	14.9999
CCUGG	chr19:41133114-41133361(+)$1	247	52	57	14.9999
CCUGG	chr19:8367166-8367472(-)$1	306	28	33	14.9999
CCUGG	chr7:100888142-100888444(-)$1	302	210	215	14.9999
CCUGG	chr16:417592-417884(-)$1	292	59	64	14.9999
CCUGG	chr11:65658701-65658962(+)$1	261	137	142	14.9999
CCUGG	chr19:12907835-12908074(-)$1	239	50	55	14.9999
CCUGG	chr17:45300279-45300514(+)$1	235	163	168	14.9999
CCUGG	chr10:88719657-88719892(+)$1	235	15	20	14.9999
CCUGG	chr9:140002739-140002994(+)$1	255	84	89	14.9999
ccUGG	chr19:10407056-10407308(+)$1	252	25	30	14.9999
CCUGG	chr1:12091677-12091952(+)$1	275	135	140	14.9999
CCUGG	chr9:139566415-139566632(+)$1	217	42	47	14.9999
CCUGG	chr6:43193985-43194231(-)$1	246	141	146	14.9999
CCUGG	chr17:73132205-73132448(-)$1	243	131	136	14.9999
CCUGG	chr9:131770813-131771099(-)$1	286	50	55	14.9999
CCUGG	chr8:144662587-144662844(-)$1	257	209	214	14.9999
CCUGG	chr8:145657651-145657937(-)$1	286	134	139	14.9999
CCUGG	chr22:20100604-20100847(-)$1	243	130	135	14.9999
CCUGG	chr16:88782750-88782974(-)$1	224	14	19	14.9999
CCUGG	chr8:145540163-145540423(-)$1	260	61	66	14.9999

#otherMatches

#Struct PSSM
eeeee	chr7:99747021-99747275(+)$1	254	150	155	14.9999
ddqqq	chr14:102516332-102516556(+)$1	224	49	54	14.9999
hhhh:	chr19:11256974-11257242(-)$1	268	76	81	14.9999
MMDDD	chr5:176798930-176799199(+)$1	269	16	21	14.9999
ggggg	chr19:2427311-2427603(-)$1	292	237	242	14.9999
FFFF{	chr7:150840351-150840627(+)$1	276	12	17	14.9999
eeeii	chr15:79214307-79214637(-)$1	330	126	131	14.9999
mmmhh	chr6:43196996-43197299(-)$1	303	74	79	14.9999
:::dd	chrX:153609258-153609524(+)$1	266	61	66	14.9999
CC{BB	chr11:65357544-65357779(+)$1	235	60	65	14.9999
ccc]h	chr1:46035462-46035693(+)$1	231	39	44	14.9999
JJJJJ	chr19:1271452-1271715(+)$1	263	249	254	14.9999
dd[cc	chr19:38797967-38798208(-)$1	241	98	103	14.9999
HHggg	chr19:39405991-39406249(-)$1	258	42	47	14.9999
GGGGG	chr8:144890715-144890964(-)$1	249	25	30	14.9999
CCCKK	chr8:30537050-30537286(-)$1	236	18	23	14.9999
ddd!!	chr6:2948694-2948938(-)$1	244	139	144	14.9999
nnnna	chr20:32441250-32441584(+)$1	334	289	294	14.9999
%%%cc	chr20:2443181-2443420(-)$1	239	30	35	14.9999
GGGee	chr22:21354900-21355138(-)$1	238	9	14	14.9999
fffff	chr19:41306416-41306667(+)$1	251	145	150	14.9999
LFFFF	chr9:131133551-131133788(+)$1	237	6	11	14.9999
qqqqq	chr3:184052587-184052844(+)$1	257	128	133	14.9999
nffff	chr9:139886990-139887244(+)$1	254	149	154	14.9999
bb:::	chr17:76161965-76162259(+)$1	294	38	43	14.9999
]ffff	chr17:79974722-79975013(+)$1	291	232	237	14.9999
eee::	chr9:139316182-139316410(+)$1	228	90	95	14.9999
mdddd	chr11:65359572-65359817(+)$1	245	104	109	14.9999
FFFFF	chr20:32245495-32245745(-)$1	250	27	32	14.9999
eeeee	chr16:30103974-30104217(-)$1	243	222	227	14.9999
iiiii	chr19:49378970-49379289(+)$1	319	78	83	14.9999
CC}FF	chr19:1010685-1010917(-)$1	232	208	213	14.9999
dddrr	chr22:38349618-38349915(+)$1	297	273	278	14.9999
dd]ff	chrX:153173170-153173499(-)$1	329	179	184	14.9999
HHHKK	chr9:140005110-140005334(-)$1	224	19	24	14.9999
ooooe	chr22:38075509-38075751(+)$1	242	180	185	14.9999
OOOOD	chr2:74754498-74754727(-)$1	229	33	38	14.9999
ffffi	chr15:75648143-75648402(-)$1	259	159	164	14.9999
:eeee	chr16:88782774-88782991(-)$1	217	9	14	14.9999
ggggg	chr13:27830295-27830536(+)$1	241	153	158	14.9999
rrrbb	chr17:79826504-79826751(-)$1	247	119	124	14.9999
LLLCC	chr11:64789185-64789462(+)$1	277	9	14	14.9999
KCCC{	chr19:41133114-41133361(+)$1	247	52	57	14.9999
JJ{DD	chr19:8367166-8367472(-)$1	306	28	33	14.9999
eee!!	chr7:100888142-100888444(-)$1	302	210	215	14.9999
D::ff	chr16:417592-417884(-)$1	292	59	64	14.9999
lllcc	chr11:65658701-65658962(+)$1	261	137	142	14.9999
:::EE	chr19:12907835-12908074(-)$1	239	50	55	14.9999
HHHH:	chr17:45300279-45300514(+)$1	235	163	168	14.9999
gggmm	chr10:88719657-88719892(+)$1	235	15	20	14.9999
444cc	chr9:140002739-140002994(+)$1	255	84	89	14.9999
CCChh	chr19:10407056-10407308(+)$1	252	25	30	14.9999
ggggg	chr1:12091677-12091952(+)$1	275	135	140	14.9999
4444d	chr9:139566415-139566632(+)$1	217	42	47	14.9999
cccCC	chr6:43193985-43194231(-)$1	246	141	146	14.9999
!gggg	chr17:73132205-73132448(-)$1	243	131	136	14.9999
nnncc	chr9:131770813-131771099(-)$1	286	50	55	14.9999
fffff	chr8:144662587-144662844(-)$1	257	209	214	14.9999
YDDDD	chr8:145657651-145657937(-)$1	286	134	139	14.9999
:ccc[	chr22:20100604-20100847(-)$1	243	130	135	14.9999
aeeee	chr16:88782750-88782974(-)$1	224	14	19	14.9999
dd]dd	chr8:145540163-145540423(-)$1	260	61	66	14.9999

#DB
)))))	chr7:99747021-99747275(+)$1	1	150	155	14.9999
((...	chr14:102516332-102516556(+)$1	1	49	54	14.9999
)))).	chr19:11256974-11257242(-)$1	1	76	81	14.9999
..(((	chr5:176798930-176799199(+)$1	1	16	21	14.9999
)))))	chr19:2427311-2427603(-)$1	1	237	242	14.9999
((((.	chr7:150840351-150840627(+)$1	1	12	17	14.9999
(((((	chr15:79214307-79214637(-)$1	1	126	131	14.9999
...))	chr6:43196996-43197299(-)$1	1	74	79	14.9999
...((	chrX:153609258-153609524(+)$1	1	61	66	14.9999
((.((	chr11:65357544-65357779(+)$1	1	60	65	14.9999
))).)	chr1:46035462-46035693(+)$1	1	39	44	14.9999
)))))	chr19:1271452-1271715(+)$1	1	249	254	14.9999
((.((	chr19:38797967-38798208(-)$1	1	98	103	14.9999
(((((	chr19:39405991-39406249(-)$1	1	42	47	14.9999
(((((	chr8:144890715-144890964(-)$1	1	25	30	14.9999
(((..	chr8:30537050-30537286(-)$1	1	18	23	14.9999
(((..	chr6:2948694-2948938(-)$1	1	139	144	14.9999
....)	chr20:32441250-32441584(+)$1	1	289	294	14.9999
...((	chr20:2443181-2443420(-)$1	1	30	35	14.9999
(((((	chr22:21354900-21355138(-)$1	1	9	14	14.9999
(((((	chr19:41306416-41306667(+)$1	1	145	150	14.9999
.((((	chr9:131133551-131133788(+)$1	1	6	11	14.9999
.....	chr3:184052587-184052844(+)$1	1	128	133	14.9999
.))))	chr9:139886990-139887244(+)$1	1	149	154	14.9999
))...	chr17:76161965-76162259(+)$1	1	38	43	14.9999
.))))	chr17:79974722-79975013(+)$1	1	232	237	14.9999
)))..	chr9:139316182-139316410(+)$1	1	90	95	14.9999
.))))	chr11:65359572-65359817(+)$1	1	104	109	14.9999
(((((	chr20:32245495-32245745(-)$1	1	27	32	14.9999
(((((	chr16:30103974-30104217(-)$1	1	222	227	14.9999
)))))	chr19:49378970-49379289(+)$1	1	78	83	14.9999
)).))	chr19:1010685-1010917(-)$1	1	208	213	14.9999
(((..	chr22:38349618-38349915(+)$1	1	273	278	14.9999
)).))	chrX:153173170-153173499(-)$1	1	179	184	14.9999
(((..	chr9:140005110-140005334(-)$1	1	19	24	14.9999
....)	chr22:38075509-38075751(+)$1	1	180	185	14.9999
....(	chr2:74754498-74754727(-)$1	1	33	38	14.9999
(((((	chr15:75648143-75648402(-)$1	1	159	164	14.9999
.((((	chr16:88782774-88782991(-)$1	1	9	14	14.9999
(((((	chr13:27830295-27830536(+)$1	1	153	158	14.9999
...))	chr17:79826504-79826751(-)$1	1	119	124	14.9999
...((	chr11:64789185-64789462(+)$1	1	9	14	14.9999
.(((.	chr19:41133114-41133361(+)$1	1	52	57	14.9999
((.((	chr19:8367166-8367472(-)$1	1	28	33	14.9999
(((..	chr7:100888142-100888444(-)$1	1	210	215	14.9999
(..((	chr16:417592-417884(-)$1	1	59	64	14.9999
...))	chr11:65658701-65658962(+)$1	1	137	142	14.9999
...((	chr19:12907835-12908074(-)$1	1	50	55	14.9999
)))).	chr17:45300279-45300514(+)$1	1	163	168	14.9999
(((..	chr10:88719657-88719892(+)$1	1	15	20	14.9999
...))	chr9:140002739-140002994(+)$1	1	84	89	14.9999
(((((	chr19:10407056-10407308(+)$1	1	25	30	14.9999
(((((	chr1:12091677-12091952(+)$1	1	135	140	14.9999
....)	chr9:139566415-139566632(+)$1	1	42	47	14.9999
)))))	chr6:43193985-43194231(-)$1	1	141	146	14.9999
.((((	chr17:73132205-73132448(-)$1	1	131	136	14.9999
...))	chr9:131770813-131771099(-)$1	1	50	55	14.9999
)))))	chr8:144662587-144662844(-)$1	1	209	214	14.9999
.))))	chr8:145657651-145657937(-)$1	1	134	139	14.9999
.(((.	chr22:20100604-20100847(-)$1	1	130	135	14.9999
)))))	chr16:88782750-88782974(-)$1	1	14	19	14.9999
)).))	chr8:145540163-145540423(-)$1	1	61	66	14.9999

#PSSM
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	929.9999999999999
#seq	62
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_transcript_m3_run1.nuc.txt

#NT
AGC	chr14:102496400-102496721(+)$1	321	48	51	9.0000
AGC	chr2:11484261-11484599(-)$1	338	57	60	9.0000
agc	chr12:124886849-124887105(-)$1	256	2	5	9.0000
AGC	chr6:90367886-90368190(-)$1	304	22	25	9.0000
AGC	chr2:201171279-201171578(+)$1	299	6	9	9.0000
AGC	chr11:2151874-2152079(-)$1	205	151	154	9.0000
AGC	chr11:638041-638312(+)$1	271	30	33	9.0000
AGC	chr6:7581116-7581423(+)$1	307	0	3	9.0000
AGC	chr1:156713841-156714162(-)$1	321	37	40	9.0000
AGC	chr13:113764706-113765063(+)$1	357	21	24	9.0000
AGC	chr19:11553099-11553428(+)$1	329	72	75	9.0000
AGC	chr20:32581607-32581873(+)$1	266	11	14	9.0000
agc	chr11:2152780-2152994(-)$1	214	18	21	9.0000
AGC	chr17:42276862-42277120(-)$1	258	179	182	9.0000
Agc	chrX:152953466-152953745(+)$1	279	19	22	9.0000
AGC	chr6:52132622-52132867(-)$1	245	73	76	9.0000
AGC	chr12:19592828-19593136(+)$1	308	55	58	9.0000
AGC	chr20:3175857-3176095(-)$1	238	26	29	9.0000
AGC	chr7:158152567-158152848(-)$1	281	152	155	9.0000
AGC	chr14:73576011-73576301(+)$1	290	13	16	9.0000
AGC	chr20:61458025-61458259(+)$1	234	28	31	9.0000
AGC	chr12:9258768-9258978(-)$1	210	196	199	9.0000
agc	chr11:2152983-2153191(-)$1	208	2	5	9.0000
agc	chr11:2153030-2153240(-)$1	210	3	6	9.0000
AGC	chr12:124885029-124885320(-)$1	291	3	6	9.0000
AGC	chr14:31676409-31676703(-)$1	294	72	75	9.0000
AGC	chr12:6878990-6879262(+)$1	272	1	4	9.0000
AGC	chr21:47564703-47564970(-)$1	267	69	72	9.0000
AGC	chr2:128184601-128184836(+)$1	235	45	48	9.0000
AGC	chr2:61764493-61764743(-)$1	250	26	29	9.0000
AGC	chr9:136533254-136533566(-)$1	312	179	182	9.0000
AGC	chr11:27493753-27494029(-)$1	276	0	3	9.0000
AGC	chr12:49350987-49351329(-)$1	342	2	5	9.0000
AGC	chr22:36681610-36681839(-)$1	229	12	15	9.0000
AGC	chr5:79946974-79947193(-)$1	219	2	5	9.0000
AGC	chr17:190071-190322(-)$1	251	119	122	9.0000
agc	chr11:2152713-2152918(-)$1	205	2	5	9.0000
agc	chr11:2152816-2153021(-)$1	205	0	3	9.0000
AGC	chr8:99057105-99057389(-)$1	284	5	8	9.0000
AGC	chr20:43029803-43030042(+)$1	239	34	37	9.0000
AGC	chr19:55628673-55629013(-)$1	340	2	5	9.0000
AGC	chr10:98346487-98346776(-)$1	289	10	13	9.0000
agc	chr11:2152909-2153124(-)$1	215	15	18	9.0000
AGC	chr16:2806233-2806497(+)$1	264	22	25	9.0000
AGC	chr2:227664132-227664389(-)$1	257	33	36	9.0000
AGC	chr6:32945944-32946196(+)$1	252	10	13	9.0000
AGC	chr9:131590918-131591210(-)$1	292	104	107	9.0000
AGC	chr11:2152536-2152745(-)$1	209	10	13	9.0000
agc	chr6:170123811-170124179(-)$1	368	85	88	9.0000
agc	chr11:2152635-2152848(-)$1	213	7	10	9.0000
AGC	chr11:2151867-2152074(-)$1	207	146	149	9.0000
agc	chr11:2152709-2152913(-)$1	204	14	17	9.0000
AGC	chr9:117054291-117054584(+)$1	293	113	116	9.0000
AGC	chr17:79603841-79604146(-)$1	305	5	8	9.0000
AGC	chr17:1268123-1268451(-)$1	328	13	16	9.0000
AGC	chr9:117053029-117053295(+)$1	266	64	67	9.0000
AGC	chr4:6642561-6642843(+)$1	282	50	53	9.0000
agc	chr11:2152728-2152951(-)$1	223	9	12	9.0000
AGC	chr12:104333186-104333459(+)$1	273	29	32	9.0000
AGC	chr12:132401678-132401926(+)$1	248	176	179	9.0000
AGC	chr9:116967287-116967526(+)$1	239	73	76	9.0000
AGC	chr16:87865846-87866093(-)$1	247	68	71	9.0000
AGC	chr12:131356993-131357253(+)$1	260	73	76	9.0000
agc	chr19:17356440-17356738(-)$1	298	21	24	9.0000
agc	chr12:133067139-133067463(+)$1	324	38	41	9.0000
AGC	chr1:109642972-109643195(+)$1	223	47	50	9.0000
AGC	chr11:2152018-2152261(-)$1	243	5	8	9.0000
AGC	chr17:37054565-37054878(+)$1	313	41	44	9.0000
AGC	chr3:47676577-47676846(-)$1	269	124	127	9.0000
AGC	chr2:102472332-102472605(+)$1	273	37	40	9.0000
AGC	chr19:45411715-45412023(+)$1	308	20	23	9.0000
AGC	chr16:88519852-88520139(+)$1	287	21	24	9.0000
agc	chr11:2152688-2152909(-)$1	221	10	13	9.0000
AGC	chr17:79827603-79827920(-)$1	317	1	4	9.0000
AGC	chr13:107220115-107220391(-)$1	276	43	46	9.0000
AGC	chr2:240322454-240322759(-)$1	305	72	75	9.0000
AGC	chr17:80193786-80194041(+)$1	255	22	25	9.0000
AGC	chr11:65383573-65383906(+)$1	333	67	70	9.0000
AGC	chr19:1020848-1021214(-)$1	366	14	17	9.0000
AGC	chr2:232576499-232576757(+)$1	258	3	6	9.0000
AGC	chr19:49994678-49994904(+)$1	226	59	62	9.0000
AGC	chr11:2153438-2153672(-)$1	234	20	23	9.0000
AGC	chr21:45107295-45107659(+)$1	364	43	46	9.0000
AGC	chr11:57094066-57094425(-)$1	359	35	38	9.0000
AGC	chr21:47565094-47565375(-)$1	281	60	63	9.0000
agc	chr11:2152666-2152876(-)$1	210	9	12	9.0000
AGC	chr16:447677-447940(+)$1	263	68	71	9.0000
AGC	chr20:42086679-42086903(+)$1	224	21	24	9.0000
AGC	chr4:76580159-76580533(-)$1	374	117	120	9.0000
AGC	chr17:80186815-80187083(+)$1	268	59	62	9.0000
agc	chr11:2152617-2152822(-)$1	205	13	16	9.0000
agc	chr11:2152924-2153136(-)$1	212	10	13	9.0000
AGC	chr3:184044213-184044515(+)$1	302	58	61	9.0000
AGC	chr9:131356406-131356693(+)$1	287	76	79	9.0000
AGC	chr16:89346260-89346556(-)$1	296	25	28	9.0000
AGC	chr9:136242772-136243050(-)$1	278	73	76	9.0000
AGC	chr20:60718832-60719109(+)$1	277	27	30	9.0000

#otherMatches

#Struct PSSM
iiq	chr9:117051437-117051662(+)$1	225	157	160	9.0000
eee	chr14:102496400-102496721(+)$1	321	48	51	9.0000
eee	chr2:11484261-11484599(-)$1	338	57	60	9.0000
[bb	chr12:124886849-124887105(-)$1	256	2	5	9.0000
:EE	chr6:90367886-90368190(-)$1	304	22	25	9.0000
qqq	chr2:201171279-201171578(+)$1	299	6	9	9.0000
666	chr11:2151874-2152079(-)$1	205	151	154	9.0000
GG{	chr11:638041-638312(+)$1	271	30	33	9.0000
:CC	chr6:7581116-7581423(+)$1	307	0	3	9.0000
[cc	chr1:156713841-156714162(-)$1	321	37	40	9.0000
KDD	chr13:113764706-113765063(+)$1	357	21	24	9.0000
fnn	chr19:11553099-11553428(+)$1	329	72	75	9.0000
C:G	chr20:32581607-32581873(+)$1	266	11	14	9.0000
pcc	chr11:2152780-2152994(-)$1	214	18	21	9.0000
555	chr17:42276862-42277120(-)$1	258	179	182	9.0000
FF{	chrX:152953466-152953745(+)$1	279	19	22	9.0000
:DD	chr6:52132622-52132867(-)$1	245	73	76	9.0000
3dd	chr12:19592828-19593136(+)$1	308	55	58	9.0000
JJJ	chr20:3175857-3176095(-)$1	238	26	29	9.0000
ppp	chr7:158152567-158152848(-)$1	281	152	155	9.0000
{CC	chr14:73576011-73576301(+)$1	290	13	16	9.0000
dd#	chr20:61458025-61458259(+)$1	234	28	31	9.0000
foo	chr12:9258768-9258978(-)$1	210	196	199	9.0000
:bb	chr11:2152983-2153191(-)$1	208	2	5	9.0000
:CC	chr11:2153030-2153240(-)$1	210	3	6	9.0000
KKE	chr12:124885029-124885320(-)$1	291	3	6	9.0000
2ee	chr14:31676409-31676703(-)$1	294	72	75	9.0000
::J	chr12:6878990-6879262(+)$1	272	1	4	9.0000
:cc	chr21:47564703-47564970(-)$1	267	69	72	9.0000
III	chr2:128184601-128184836(+)$1	235	45	48	9.0000
KBB	chr2:61764493-61764743(-)$1	250	26	29	9.0000
pee	chr9:136533254-136533566(-)$1	312	179	182	9.0000
:GG	chr11:27493753-27494029(-)$1	276	0	3	9.0000
DDB	chr12:49350987-49351329(-)$1	342	2	5	9.0000
:::	chr22:36681610-36681839(-)$1	229	12	15	9.0000
:::	chr5:79946974-79947193(-)$1	219	2	5	9.0000
2gg	chr17:190071-190322(-)$1	251	119	122	9.0000
:cc	chr11:2152713-2152918(-)$1	205	2	5	9.0000
:bb	chr11:2152816-2153021(-)$1	205	0	3	9.0000
:BB	chr8:99057105-99057389(-)$1	284	5	8	9.0000
fff	chr20:43029803-43030042(+)$1	239	34	37	9.0000
:::	chr19:55628673-55629013(-)$1	340	2	5	9.0000
ooo	chr10:98346487-98346776(-)$1	289	10	13	9.0000
:bb	chr11:2152909-2153124(-)$1	215	15	18	9.0000
ddd	chr16:2806233-2806497(+)$1	264	22	25	9.0000
mmm	chr2:227664132-227664389(-)$1	257	33	36	9.0000
:::	chr6:32945944-32946196(+)$1	252	10	13	9.0000
:dd	chr9:131590918-131591210(-)$1	292	104	107	9.0000
:EE	chr11:2152536-2152745(-)$1	209	10	13	9.0000
[bb	chr6:170123811-170124179(-)$1	368	85	88	9.0000
:::	chr11:2152635-2152848(-)$1	213	7	10	9.0000
Hcc	chr11:2151867-2152074(-)$1	207	146	149	9.0000
:bb	chr11:2152709-2152913(-)$1	204	14	17	9.0000
mmf	chr9:117054291-117054584(+)$1	293	113	116	9.0000
:bb	chr17:79603841-79604146(-)$1	305	5	8	9.0000
ee[	chr17:1268123-1268451(-)$1	328	13	16	9.0000
===	chr9:117053029-117053295(+)$1	266	64	67	9.0000
2dd	chr4:6642561-6642843(+)$1	282	50	53	9.0000
:::	chr11:2152728-2152951(-)$1	223	9	12	9.0000
"dd	chr12:104333186-104333459(+)$1	273	29	32	9.0000
hhh	chr12:132401678-132401926(+)$1	248	176	179	9.0000
dd>	chr9:116967287-116967526(+)$1	239	73	76	9.0000
:dd	chr16:87865846-87866093(-)$1	247	68	71	9.0000
FF{	chr12:131356993-131357253(+)$1	260	73	76	9.0000
fff	chr19:17356440-17356738(-)$1	298	21	24	9.0000
:::	chr12:133067139-133067463(+)$1	324	38	41	9.0000
KGG	chr1:109642972-109643195(+)$1	223	47	50	9.0000
KKD	chr11:2152018-2152261(-)$1	243	5	8	9.0000
nnn	chr17:37054565-37054878(+)$1	313	41	44	9.0000
ppp	chr3:47676577-47676846(-)$1	269	124	127	9.0000
:::	chr2:102472332-102472605(+)$1	273	37	40	9.0000
:DD	chr19:45411715-45412023(+)$1	308	20	23	9.0000
:EE	chr16:88519852-88520139(+)$1	287	21	24	9.0000
:bb	chr11:2152688-2152909(-)$1	221	10	13	9.0000
DDD	chr17:79827603-79827920(-)$1	317	1	4	9.0000
KCC	chr13:107220115-107220391(-)$1	276	43	46	9.0000
:bb	chr2:240322454-240322759(-)$1	305	72	75	9.0000
!!e	chr17:80193786-80194041(+)$1	255	22	25	9.0000
[cc	chr11:65383573-65383906(+)$1	333	67	70	9.0000
JJJ	chr19:1020848-1021214(-)$1	366	14	17	9.0000
EEE	chr2:232576499-232576757(+)$1	258	3	6	9.0000
nnn	chr19:49994678-49994904(+)$1	226	59	62	9.0000
:::	chr11:2153438-2153672(-)$1	234	20	23	9.0000
CC{	chr21:45107295-45107659(+)$1	364	43	46	9.0000
ddd	chr11:57094066-57094425(-)$1	359	35	38	9.0000
]bb	chr21:47565094-47565375(-)$1	281	60	63	9.0000
:bb	chr11:2152666-2152876(-)$1	210	9	12	9.0000
ccc	chr16:447677-447940(+)$1	263	68	71	9.0000
KEE	chr20:42086679-42086903(+)$1	224	21	24	9.0000
e!!	chr4:76580159-76580533(-)$1	374	117	120	9.0000
2a2	chr17:80186815-80187083(+)$1	268	59	62	9.0000
:BB	chr11:2152617-2152822(-)$1	205	13	16	9.0000
:bb	chr11:2152924-2153136(-)$1	212	10	13	9.0000
===	chr3:184044213-184044515(+)$1	302	58	61	9.0000
cc]	chr9:131356406-131356693(+)$1	287	76	79	9.0000
EEE	chr16:89346260-89346556(-)$1	296	25	28	9.0000
{BB	chr9:136242772-136243050(-)$1	278	73	76	9.0000
::h	chr20:60718832-60719109(+)$1	277	27	30	9.0000

#DB
((.	chr9:117051437-117051662(+)$1	1	157	160	9.0000
)))	chr14:102496400-102496721(+)$1	1	48	51	9.0000
)))	chr2:11484261-11484599(-)$1	1	57	60	9.0000
.((	chr12:124886849-124887105(-)$1	1	2	5	9.0000
.((	chr6:90367886-90368190(-)$1	1	22	25	9.0000
...	chr2:201171279-201171578(+)$1	1	6	9	9.0000
...	chr11:2151874-2152079(-)$1	1	151	154	9.0000
((.	chr11:638041-638312(+)$1	1	30	33	9.0000
.((	chr6:7581116-7581423(+)$1	1	0	3	9.0000
.((	chr1:156713841-156714162(-)$1	1	37	40	9.0000
.((	chr13:113764706-113765063(+)$1	1	21	24	9.0000
(..	chr19:11553099-11553428(+)$1	1	72	75	9.0000
(.(	chr20:32581607-32581873(+)$1	1	11	14	9.0000
.))	chr11:2152780-2152994(-)$1	1	18	21	9.0000
...	chr17:42276862-42277120(-)$1	1	179	182	9.0000
((.	chrX:152953466-152953745(+)$1	1	19	22	9.0000
.((	chr6:52132622-52132867(-)$1	1	73	76	9.0000
.))	chr12:19592828-19593136(+)$1	1	55	58	9.0000
(((	chr20:3175857-3176095(-)$1	1	26	29	9.0000
...	chr7:158152567-158152848(-)$1	1	152	155	9.0000
.((	chr14:73576011-73576301(+)$1	1	13	16	9.0000
((.	chr20:61458025-61458259(+)$1	1	28	31	9.0000
(..	chr12:9258768-9258978(-)$1	1	196	199	9.0000
.((	chr11:2152983-2153191(-)$1	1	2	5	9.0000
.((	chr11:2153030-2153240(-)$1	1	3	6	9.0000
..(	chr12:124885029-124885320(-)$1	1	3	6	9.0000
.))	chr14:31676409-31676703(-)$1	1	72	75	9.0000
..(	chr12:6878990-6879262(+)$1	1	1	4	9.0000
.((	chr21:47564703-47564970(-)$1	1	69	72	9.0000
(((	chr2:128184601-128184836(+)$1	1	45	48	9.0000
.((	chr2:61764493-61764743(-)$1	1	26	29	9.0000
.))	chr9:136533254-136533566(-)$1	1	179	182	9.0000
.((	chr11:27493753-27494029(-)$1	1	0	3	9.0000
(((	chr12:49350987-49351329(-)$1	1	2	5	9.0000
...	chr22:36681610-36681839(-)$1	1	12	15	9.0000
...	chr5:79946974-79947193(-)$1	1	2	5	9.0000
.))	chr17:190071-190322(-)$1	1	119	122	9.0000
.((	chr11:2152713-2152918(-)$1	1	2	5	9.0000
.((	chr11:2152816-2153021(-)$1	1	0	3	9.0000
.((	chr8:99057105-99057389(-)$1	1	5	8	9.0000
(((	chr20:43029803-43030042(+)$1	1	34	37	9.0000
...	chr19:55628673-55629013(-)$1	1	2	5	9.0000
...	chr10:98346487-98346776(-)$1	1	10	13	9.0000
.((	chr11:2152909-2153124(-)$1	1	15	18	9.0000
(((	chr16:2806233-2806497(+)$1	1	22	25	9.0000
...	chr2:227664132-227664389(-)$1	1	33	36	9.0000
...	chr6:32945944-32946196(+)$1	1	10	13	9.0000
.((	chr9:131590918-131591210(-)$1	1	104	107	9.0000
.((	chr11:2152536-2152745(-)$1	1	10	13	9.0000
.((	chr6:170123811-170124179(-)$1	1	85	88	9.0000
...	chr11:2152635-2152848(-)$1	1	7	10	9.0000
(((	chr11:2151867-2152074(-)$1	1	146	149	9.0000
.((	chr11:2152709-2152913(-)$1	1	14	17	9.0000
..)	chr9:117054291-117054584(+)$1	1	113	116	9.0000
.((	chr17:79603841-79604146(-)$1	1	5	8	9.0000
((.	chr17:1268123-1268451(-)$1	1	13	16	9.0000
)))	chr9:117053029-117053295(+)$1	1	64	67	9.0000
.))	chr4:6642561-6642843(+)$1	1	50	53	9.0000
...	chr11:2152728-2152951(-)$1	1	9	12	9.0000
.((	chr12:104333186-104333459(+)$1	1	29	32	9.0000
)))	chr12:132401678-132401926(+)$1	1	176	179	9.0000
)).	chr9:116967287-116967526(+)$1	1	73	76	9.0000
.((	chr16:87865846-87866093(-)$1	1	68	71	9.0000
((.	chr12:131356993-131357253(+)$1	1	73	76	9.0000
)))	chr19:17356440-17356738(-)$1	1	21	24	9.0000
...	chr12:133067139-133067463(+)$1	1	38	41	9.0000
.((	chr1:109642972-109643195(+)$1	1	47	50	9.0000
..(	chr11:2152018-2152261(-)$1	1	5	8	9.0000
...	chr17:37054565-37054878(+)$1	1	41	44	9.0000
...	chr3:47676577-47676846(-)$1	1	124	127	9.0000
...	chr2:102472332-102472605(+)$1	1	37	40	9.0000
.((	chr19:45411715-45412023(+)$1	1	20	23	9.0000
.((	chr16:88519852-88520139(+)$1	1	21	24	9.0000
.((	chr11:2152688-2152909(-)$1	1	10	13	9.0000
(((	chr17:79827603-79827920(-)$1	1	1	4	9.0000
.((	chr13:107220115-107220391(-)$1	1	43	46	9.0000
.((	chr2:240322454-240322759(-)$1	1	72	75	9.0000
..(	chr17:80193786-80194041(+)$1	1	22	25	9.0000
.((	chr11:65383573-65383906(+)$1	1	67	70	9.0000
(((	chr19:1020848-1021214(-)$1	1	14	17	9.0000
(((	chr2:232576499-232576757(+)$1	1	3	6	9.0000
...	chr19:49994678-49994904(+)$1	1	59	62	9.0000
...	chr11:2153438-2153672(-)$1	1	20	23	9.0000
((.	chr21:45107295-45107659(+)$1	1	43	46	9.0000
)))	chr11:57094066-57094425(-)$1	1	35	38	9.0000
.))	chr21:47565094-47565375(-)$1	1	60	63	9.0000
.((	chr11:2152666-2152876(-)$1	1	9	12	9.0000
(((	chr16:447677-447940(+)$1	1	68	71	9.0000
.((	chr20:42086679-42086903(+)$1	1	21	24	9.0000
(..	chr4:76580159-76580533(-)$1	1	117	120	9.0000
.).	chr17:80186815-80187083(+)$1	1	59	62	9.0000
.((	chr11:2152617-2152822(-)$1	1	13	16	9.0000
.((	chr11:2152924-2153136(-)$1	1	10	13	9.0000
(((	chr3:184044213-184044515(+)$1	1	58	61	9.0000
)).	chr9:131356406-131356693(+)$1	1	76	79	9.0000
(((	chr16:89346260-89346556(-)$1	1	25	28	9.0000
.((	chr9:136242772-136243050(-)$1	1	73	76	9.0000
..(	chr20:60718832-60719109(+)$1	1	27	30	9.0000

#PSSM
A : 0.82	a : 0.17	
G : 0.81	g : 0.18	
C : 0.81	c : 0.18	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_transcript_m2_run1.nuc.txt

#NT
AGUUCACCUAAAAACAUGCCUAAGACACUUUGUAUUGAGAUACAGUUGAUAUUACACAAACAAGAAUUGUGUUAAACAGGUUCUGAUUUAUUGUGUAUUUGAGCAAGUACCAUUGUAUCGUUUUCCUUGUAACUUAUUAAUGCUAUCUUUUUGUACAUAAAGAUGUUUGUAAGAAUAUAUAUGUUUAAGUGUUAAUUAAUAGUUAUGUUAUCAAUAAUGUUUAUUAGUUCAguagacauuuagcaucacuugucuuacagauggggaaacagagguuuaaaugauuu	chrX:20264750-20265089(-)$1	339	39	326	408.5000

#otherMatches

#Struct PSSM
dd####ffffff"""ccc[ffffffuuuuuuuuuuuuffffff]cccffffff>>>>>>>>>>>>>>>>>>dddd]eeeee55555ffffff333dddd:::::::::ddddnnnnndddd:::::============[bb$$$$$hhhhhhhh%%%%%%eeeee$$$$$ccc[eeeeemmmmeeeee]ccc4444eeeee88888888hhhhhhhh333bb]============ggggggg!!ccclllccc22ggggggg:::::EEEEE::::::::::ddddq	chr4:26328762-26329095(+)$1	333	30	317	408.5000
bcccqqqqqqqqccc]bb]bb]bb::::::EEEEE{FFFFFFKKGGGGGGG::ffffffpppppppffffff:::cccbb"""dddd[bb[bb[ffffffmmmmffffffbb]bb]dddd4444bb]ccc::::GGGGGGGYYFFFFFFZZZEEEEE:::::::==========%%%%%%eeeee[gggggggiiiiiiiii[cccssssssssssccc]iiiiiiiii55555gggggggeeeee666666==========IIIIIIIIIZZZJJJJJJJJJJJ??	chrX:20264750-20265089(-)$1	339	39	326	408.5000

#DB
((....((((((...(((.((((((............)))))).)))))))))..................)))).))))).....))))))...)))).........((((.....)))).....((((((((((((.((.....((((((((......(((((.....(((.(((((....))))).)))....)))))........))))))))...)).))))))))))))(((((((..(((...)))..))))))).....)))))..........((((.	chr4:26328762-26329095(+)$1	1	30	317	408.5000
((((........))).)).)).))......(((((.((((((..(((((((..((((((.......))))))...(((((...((((.((.((.((((((....)))))))).)).))))....)).)))....)))))))..))))))...))))).......((((((((((......(((((.((((((((((((((((.(((..........))).))))))))).....))))))))))))......)))))))))))))))))))...)))))))))))..	chrX:20264750-20265089(-)$1	1	39	326	408.5000

#PSSM
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
C : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	g : 0.50	
U : 0.50	u : 0.50	
A : 0.50	a : 0.50	
C : 0.50	g : 0.50	
U : 0.50	a : 0.50	
A : 0.50	c : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
U : 0.50	u : 0.50	
U : 0.50	u : 0.50	
A : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
U : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
A : 0.50	u : 0.50	
A : 0.50	u : 0.50	
A : 0.50	g : 0.50	
A : 0.50	u : 0.50	
A : 0.50	c : 0.50	
A : 0.50	u : 0.50	
U : 0.50	u : 0.50	
A : 0.50	a : 0.50	
A : 0.50	c : 0.50	
A : 0.50	a : 0.50	
A : 0.50	g : 0.50	
U : 0.50	a : 0.50	
A : 0.50	u : 0.50	
U : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	a : 0.50	
A : 0.50	a : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	g : 0.50	
A : 0.50	a : 0.50	
U : 0.50	g : 0.50	
U : 0.50	g : 0.50	
U : 0.50	u : 0.50	
U : 0.50	u : 0.50	
U : 0.50	u : 0.50	
U : 0.50	a : 0.50	
U : 0.50	a : 0.50	
A : 0.50	a : 0.50	
A : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	u : 0.50	
A : 0.50	u : 0.50	
U : 0.50	u : 0.50	

#score	817.0
#seq	2
#width	287
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_transcript_m2_run1.nuc.txt

#NT
GAAGAUGAGGAAGAA	chr19:49377330-49377598(+)$1	268	219	234	24.3750
gaagaagaagaagaa	chr2:27606725-27606957(-)$1	232	88	103	30.1041
GAGGAAGAAGAUGAA	chr3:3216834-3217055(-)$1	221	110	125	23.6458
GAACAAGAGGAAGAC	chr2:88892689-88892998(-)$1	309	129	144	19.7916
GAAGAAGGAAAAGAA	chr14:73563532-73563814(+)$1	282	254	269	27.8125
GAAGAGGGAGAUGAA	chrX:53588736-53588983(-)$1	247	113	128	21.4583
gaagaagaagaugaa	chr4:174253080-174253301(-)$1	221	23	38	27.0833
GGAUGAGAAGAAGAA	chr12:49437550-49437771(-)$1	221	45	60	17.5000
GUAGAAGAAAAGGAU	chr17:46930228-46930461(+)$1	233	192	207	19.2708
GAAGAAGACAAAGAC	chr19:10286154-10286392(-)$1	238	159	174	23.6458
GAAGAAGACCGUGAA	chr5:96090260-96090508(+)$1	248	113	128	19.5833
GAACAGGAAAGAGAA	chr5:74066411-74066671(+)$1	260	111	126	20.1041
GAAGAGGCAAAAGGA	chr1:146757026-146757254(+)$1	228	102	117	19.6875
GAAAAUGAAGAGGAA	chr11:2992576-2992786(-)$1	210	82	97	19.8958
GAAGAAGAGGAGGAU	chr14:103804970-103805298(+)$1	328	101	116	20.7291
GAAGAACAUAGAGAA	chr11:64536821-64537087(-)$1	266	18	33	20.4166
GAUGAAGAUGAGGAA	chr2:232577052-232577254(+)$1	202	117	132	20.9375
GAAGAUGCAGAAGAA	chr7:135290817-135291074(+)$1	257	123	138	24.0625
GAGGAAGAAGAAGAA	chr14:21820861-21821077(-)$1	216	120	135	26.6666
GAAGAGGAAGAUGAA	chr2:145187359-145187647(-)$1	288	227	242	23.9583
AAAGAAGGAAAAAAA	chr7:104715075-104715347(+)$1	272	134	149	19.0625
gaagaagaaaaagaa	chr14:102551215-102551431(-)$1	216	156	171	30.3125
GAAGUUGGAAAAGAA	chr17:61824177-61824424(-)$1	247	129	144	20.5208
gagggaggaaaagag	chr17:43225836-43226084(+)$1	248	94	109	16.3541
GAGGAAGAUCAGGAA	chr17:27417727-27417958(-)$1	231	71	86	20.1041
GAGGAUGAAAGAGAA	chr19:49377608-49377850(+)$1	242	112	127	20.4166
gaagaggaaaaagaa	chr10:127512156-127512375(+)$1	219	48	63	27.1875
GAAGCAGAUCCAGAA	chr5:96089663-96089885(+)$1	222	157	172	18.4375
GAAGAAGGUGAAGAA	chr12:76443449-76443656(-)$1	207	97	112	25.4166
GAGGAAGCAAAAGAG	chr12:56563563-56563792(-)$1	229	127	142	20.1041
CAAGAAGACAAGGAA	chr2:39251075-39251340(-)$1	265	86	101	20.4166
GAACUAGAAGAAGAA	chr17:27004662-27004890(+)$1	228	106	121	22.1875
AAAGAAAAAGGAGAA	chr2:178095445-178095722(-)$1	277	12	27	18.4375
GAAGAAAGAAAAGAA	chr1:22041781-22042005(-)$1	224	66	81	23.6458
AUAGAAGAACAAGAA	chr11:134079143-134079369(-)$1	226	10	25	20.2083
GAAGCAGCUAAAGAA	chr14:56115417-56115684(+)$1	267	7	22	21.0416
GCAGAAGAAGAAGAA	chr16:88783583-88783812(-)$1	229	213	228	25.7291
GAAGAAGAUGAGGAA	chr1:205687414-205687647(-)$1	233	126	141	25.0000
GGAGAAGAGAAAGAG	chr6:30545798-30546042(+)$1	244	111	126	19.5833
gaagaaacaaaagaa	chr20:60711735-60711957(-)$1	222	20	35	23.2291
GAACAAGGAACAGAA	chr12:98925445-98925717(+)$1	272	56	71	20.2083
CAAGAGGUUAAAGAA	chr17:71197861-71198128(+)$1	267	106	121	17.3958
gaagaagaagaagau	chr14:102550966-102551189(-)$1	223	15	30	26.2500
GAAGAUUAUGGAGAA	chr1:245021942-245022175(-)$1	233	94	109	17.0833
GAGGAAGAACAAGAA	chr22:42017958-42018190(+)$1	232	98	113	25.2083
GAAGAAGGCCAAGAA	chr10:103587549-103587816(-)$1	267	212	227	23.4375
gaagaagagAGUGAA	chr6:32945670-32945881(+)$1	211	43	58	21.3541

#otherMatches

#Struct PSSM
:::::::::::::::	chr1:67895695-67895950(-)$1	255	71	86	17.3958
:::::::::::::::	chr19:49377330-49377598(+)$1	268	219	234	24.3750
^^^^^^^^^^^^^^^	chr2:27606725-27606957(-)$1	232	88	103	30.1041
===========]bb]	chr3:3216834-3217055(-)$1	221	110	125	23.6458
dddddddddd!!ddd	chr2:88892689-88892998(-)$1	309	129	144	19.7916
IIIIII~~~~CCCEE	chr14:73563532-73563814(+)$1	282	254	269	27.8125
ff:JJJJJJJJJJ:b	chrX:53588736-53588983(-)$1	247	113	128	21.4583
OOOOOBBLLLHHHHH	chr4:174253080-174253301(-)$1	221	23	38	27.0833
vvvvvvvvbb333dd	chr12:49437550-49437771(-)$1	221	45	60	17.5000
333eeeee333ffff	chr17:46930228-46930461(+)$1	233	192	207	19.2708
+++++++++++++++	chr19:10286154-10286392(-)$1	238	159	174	23.6458
::::::::HHHHHHH	chr5:96090260-96090508(+)$1	248	113	128	19.5833
bb22dddd:::::::	chr5:74066411-74066671(+)$1	260	111	126	20.1041
00000dddd:::bb!	chr1:146757026-146757254(+)$1	228	102	117	19.6875
:::::ffffff"""a	chr11:2992576-2992786(-)$1	210	82	97	19.8958
CMMMMCCC{DDDDPP	chr14:103804970-103805298(+)$1	328	101	116	20.7291
22ccc::DDDDNNNN	chr11:64536821-64537087(-)$1	266	18	33	20.4166
FFF?????GGGGGGG	chr2:232577052-232577254(+)$1	202	117	132	20.9375
gggggggdddd::::	chr7:135290817-135291074(+)$1	257	123	138	24.0625
b22ccc22ffffff:	chr14:21820861-21821077(-)$1	216	120	135	26.6666
b::FFFFFF}BB:::	chr2:145187359-145187647(-)$1	288	227	242	23.9583
^^^^^^eeeeeiiii	chr7:104715075-104715347(+)$1	272	134	149	19.0625
:::::::::::::::	chr14:102551215-102551431(-)$1	216	156	171	30.3125
a]ccc]ccc22dddd	chr17:61824177-61824424(-)$1	247	129	144	20.5208
cc[ccc+++++++++	chr17:43225836-43226084(+)$1	248	94	109	16.3541
EEEEE{EEEEE{BB{	chr17:27417727-27417958(-)$1	231	71	86	20.1041
yyyyyyyyyyyyyyy	chr19:49377608-49377850(+)$1	242	112	127	20.4166
b::::::::::::::	chr10:127512156-127512375(+)$1	219	48	63	27.1875
99dddd::ddddnnn	chr5:96089663-96089885(+)$1	222	157	172	18.4375
b]ffffff]dddd]d	chr12:76443449-76443656(-)$1	207	97	112	25.4166
ddd"""bbwwwwwww	chr12:56563563-56563792(-)$1	229	127	142	20.1041
fffff]ffffffggg	chr2:39251075-39251340(-)$1	265	86	101	20.4166
eebb4444bb:ffff	chr17:27004662-27004890(+)$1	228	106	121	22.1875
::::::::EEEEE::	chr2:178095445-178095722(-)$1	277	12	27	18.4375
===EEEEE{JJJJJJ	chr1:22041781-22042005(-)$1	224	66	81	23.6458
:============[a	chr11:134079143-134079369(-)$1	226	10	25	20.2083
::cccdddd"""fff	chr14:56115417-56115684(+)$1	267	7	22	21.0416
GGGGG::::::::::	chr16:88783583-88783812(-)$1	229	213	228	25.7291
GGGGGGYYBB}DDDD	chr1:205687414-205687647(-)$1	233	126	141	25.0000
GGGG::cccoooooo	chr6:30545798-30546042(+)$1	244	111	126	19.5833
EEEEE{BBKKCCC:e	chr20:60711735-60711957(-)$1	222	20	35	23.2291
cc22dddd::hhhhh	chr12:98925445-98925717(+)$1	272	56	71	20.2083
b!!ddddvvvvvvvv	chr17:71197861-71198128(+)$1	267	106	121	17.3958
BB{EEEEE{BB{DDD	chr14:102550966-102551189(-)$1	223	15	30	26.2500
###ggggggg&&&&&	chr1:245021942-245022175(-)$1	233	94	109	17.0833
GGG::::::ddddqq	chr22:42017958-42018190(+)$1	232	98	113	25.2083
D~~~~IIIIIIIII:	chr10:103587549-103587816(-)$1	267	212	227	23.4375
JJJJJJccc!!cccm	chr6:32945670-32945881(+)$1	211	43	58	21.3541

#DB
...............	chr1:67895695-67895950(-)$1	1	71	86	17.3958
...............	chr19:49377330-49377598(+)$1	1	219	234	24.3750
...............	chr2:27606725-27606957(-)$1	1	88	103	30.1041
))))))))))).)).	chr3:3216834-3217055(-)$1	1	110	125	23.6458
))))))((((..(((	chr2:88892689-88892998(-)$1	1	129	144	19.7916
))))))....)))))	chr14:73563532-73563814(+)$1	1	254	269	27.8125
)).)))))))))).(	chrX:53588736-53588983(-)$1	1	113	128	21.4583
.....((...(((((	chr4:174253080-174253301(-)$1	1	23	38	27.0833
........))...))	chr12:49437550-49437771(-)$1	1	45	60	17.5000
...)))))...))))	chr17:46930228-46930461(+)$1	1	192	207	19.2708
...............	chr19:10286154-10286392(-)$1	1	159	174	23.6458
........)))))))	chr5:96090260-96090508(+)$1	1	113	128	19.5833
))..)))).......	chr5:74066411-74066671(+)$1	1	111	126	20.1041
.....))))...((.	chr1:146757026-146757254(+)$1	1	102	117	19.6875
.....((((((...(	chr11:2992576-2992786(-)$1	1	82	97	19.8958
(....(((.((((..	chr14:103804970-103805298(+)$1	1	101	116	20.7291
..)))..((((....	chr11:64536821-64537087(-)$1	1	18	33	20.4166
))).....)))))))	chr2:232577052-232577254(+)$1	1	117	132	20.9375
)))))))))))....	chr7:135290817-135291074(+)$1	1	123	138	24.0625
)..)))..)))))).	chr14:21820861-21821077(-)$1	1	120	135	26.6666
)..)))))).))...	chr2:145187359-145187647(-)$1	1	227	242	23.9583
......)))))((((	chr7:104715075-104715347(+)$1	1	134	149	19.0625
...............	chr14:102551215-102551431(-)$1	1	156	171	30.3125
).))).)))..))))	chr17:61824177-61824424(-)$1	1	129	144	20.5208
((.(((.........	chr17:43225836-43226084(+)$1	1	94	109	16.3541
(((((.(((((.((.	chr17:27417727-27417958(-)$1	1	71	86	20.1041
...............	chr19:49377608-49377850(+)$1	1	112	127	20.4166
)..............	chr10:127512156-127512375(+)$1	1	48	63	27.1875
..))))..((((...	chr5:96089663-96089885(+)$1	1	157	172	18.4375
).)))))).)))).)	chr12:76443449-76443656(-)$1	1	97	112	25.4166
(((...((.......	chr12:56563563-56563792(-)$1	1	127	142	20.1041
))))).))))))(((	chr2:39251075-39251340(-)$1	1	86	101	20.4166
))))....)).((((	chr17:27004662-27004890(+)$1	1	106	121	22.1875
........(((((..	chr2:178095445-178095722(-)$1	1	12	27	18.4375
)))(((((.((((((	chr1:22041781-22042005(-)$1	1	66	81	23.6458
.((((((((((((.(	chr11:134079143-134079369(-)$1	1	10	25	20.2083
..(((((((...(((	chr14:56115417-56115684(+)$1	1	7	22	21.0416
)))))..........	chr16:88783583-88783812(-)$1	1	213	228	25.7291
))))))..)).))))	chr1:205687414-205687647(-)$1	1	126	141	25.0000
))))..(((......	chr6:30545798-30546042(+)$1	1	111	126	19.5833
(((((.((..(((.(	chr20:60711735-60711957(-)$1	1	20	35	23.2291
))..))))..(((((	chr12:98925445-98925717(+)$1	1	56	71	20.2083
(..((((........	chr17:71197861-71198128(+)$1	1	106	121	17.3958
((.(((((.((.(((	chr14:102550966-102551189(-)$1	1	15	30	26.2500
...(((((((.....	chr1:245021942-245022175(-)$1	1	94	109	17.0833
(((......((((..	chr22:42017958-42018190(+)$1	1	98	113	25.2083
)....))))))))).	chr10:103587549-103587816(-)$1	1	212	227	23.4375
(((((((((..(((.	chr6:32945670-32945881(+)$1	1	43	58	21.3541

#PSSM
G : 0.72	g : 0.16	A : 0.06	C : 0.04	
A : 0.72	a : 0.16	G : 0.04	U : 0.04	C : 0.02	
A : 0.68	a : 0.14	G : 0.12	U : 0.02	g : 0.02	
G : 0.68	g : 0.16	C : 0.10	U : 0.02	A : 0.02	
A : 0.72	a : 0.14	U : 0.04	C : 0.04	G : 0.02	g : 0.02	
A : 0.60	a : 0.14	U : 0.12	G : 0.10	g : 0.02	
G : 0.75	g : 0.14	A : 0.04	C : 0.02	a : 0.02	U : 0.02	
A : 0.56	G : 0.16	a : 0.12	C : 0.08	g : 0.02	c : 0.02	U : 0.02	
A : 0.47	U : 0.18	a : 0.14	G : 0.08	C : 0.08	g : 0.02	
A : 0.37	G : 0.35	C : 0.12	a : 0.08	g : 0.06	
A : 0.66	a : 0.14	G : 0.14	C : 0.04	
A : 0.60	G : 0.14	a : 0.12	U : 0.10	u : 0.02	
G : 0.81	g : 0.14	A : 0.04	
A : 0.81	a : 0.14	G : 0.04	
A : 0.72	a : 0.10	C : 0.04	U : 0.04	G : 0.04	g : 0.02	u : 0.02	

#score	1056.4583333333337
#seq	48
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_transcript_m3_run2.nuc.txt

#NT
UAUGCU	chr9:33112319-33112585(-)$1	266	61	67	10.4999
UGUCCU	chrX:118602417-118602680(+)$1	263	77	83	11.0645
UCUGCU	chr17:94349-94627(-)$1	278	166	172	10.7419
UGUGCU	chr12:123994542-123994824(-)$1	282	164	170	14.7741
UGUACU	chrM:1454-1664(+)$1	210	122	128	10.8225
ugugcu	chr6:158993834-158994103(+)$1	269	206	212	14.7741
UGUGCU	chr3:186504450-186504655(+)$1	205	31	37	14.7741
UGUGCU	chrX:132669918-132670156(-)$1	238	24	30	14.7741
UGUGAU	chr4:83816906-83817165(-)$1	259	132	138	11.3870
uguccu	chr19:45314400-45314631(+)$1	231	1	7	11.0645
UUUGCU	chr18:43669431-43669704(-)$1	273	211	217	10.6612
ugugcu	chr2:241900619-241900886(-)$1	267	48	54	14.7741
UGUGCC	chr22:35738301-35738595(+)$1	294	106	112	10.5806
UGUGCG	chr6:64282663-64282912(+)$1	249	140	146	10.4999
UGUGCC	chr17:57915200-57915439(+)$1	239	102	108	10.5806
UGUCCU	chr9:137228725-137228976(+)$1	251	80	86	11.0645
UGUGCU	chr16:50583734-50583987(+)$1	253	127	133	14.7741
ugugCU	chr7:158055950-158056222(-)$1	272	166	172	14.7741
UGUGGU	chr16:89417671-89417951(-)$1	280	130	136	11.2258
UGUGCU	chr3:186504423-186504632(+)$1	209	58	64	14.7741
UGUGCA	chr3:33038273-33038540(-)$1	267	115	121	10.4999
UGUGCU	chr3:186504455-186504661(+)$1	206	26	32	14.7741
UGUGAU	chr6:26031727-26031957(-)$1	230	158	164	11.3870
UGUGCC	chr7:158126199-158126482(-)$1	283	205	211	10.5806
UGUGCU	chr3:186504436-186504642(+)$1	206	45	51	14.7741
uguccu	chr3:197243781-197244066(-)$1	285	175	181	11.0645
UGUGCU	chr3:186504413-186504619(+)$1	206	68	74	14.7741
uguccu	chr3:197243866-197244164(-)$1	298	273	279	11.0645
UGUGUU	chr3:65880829-65881090(-)$1	261	49	55	11.2258
UGUGCU	chr17:80408101-80408385(-)$1	284	67	73	14.7741
uguguu	chr17:7077807-7078029(-)$1	222	17	23	11.2258
UGUGCU	chr16:81547155-81547394(+)$1	239	37	43	14.7741
uguucu	chr13:113767732-113768003(+)$1	271	99	105	10.6612
UGUGAU	chr1:173835915-173836165(-)$1	250	93	99	11.3870
UGUGCU	chr3:186504419-186504623(+)$1	204	62	68	14.7741
UGUGCU	chr12:123994624-123994920(-)$1	296	260	266	14.7741
UGUACU	chrM:1452-1654(+)$1	202	124	130	10.8225
UGUGAU	chr1:2214787-2215053(+)$1	266	122	128	11.3870
UCUGCU	chrX:153063683-153063964(+)$1	281	50	56	10.7419
uguguu	chr8:9628306-9628679(+)$1	373	40	46	11.2258
UGUGCU	chr21:45945120-45945506(+)$1	386	175	181	14.7741
UCUGCU	chr16:85838465-85838808(+)$1	343	309	315	10.7419
UGUGCU	chr3:186504408-186504612(+)$1	204	73	79	14.7741
ugugau	chr20:62362986-62363236(+)$1	250	28	34	11.3870
UGUGUU	chrX:132669837-132670063(-)$1	226	54	60	11.2258
UGUGCU	chr3:186504461-186504670(+)$1	209	20	26	14.7741
UGUACU	chr3:32933418-32933652(+)$1	234	86	92	10.8225
UGUGCU	chr12:123994385-123994676(-)$1	291	16	22	14.7741
UGUCCU	chr10:5005580-5005821(+)$1	241	106	112	11.0645
UUUGCU	chr1:173835358-173835577(-)$1	219	20	26	10.6612
UGUGGU	chr14:94908788-94909044(-)$1	256	185	191	11.2258
ugugau	chr2:241900839-241901081(-)$1	242	9	15	11.3870
ugugcu	chr3:186794103-186794344(+)$1	241	218	224	14.7741
UGUGCU	chr1:12644496-12644773(-)$1	277	209	215	14.7741
ugugcg	chr13:76023508-76023786(-)$1	278	85	91	10.4999
uguggu	chr16:81499130-81499397(+)$1	267	31	37	11.2258
UGUGCA	chr14:50235029-50235305(+)$1	276	75	81	10.4999
UCUGCU	chr11:62300156-62300416(-)$1	260	88	94	10.7419
uguggu	chr19:23505073-23505352(-)$1	279	44	50	11.2258
ugugcu	chr7:158223993-158224249(-)$1	256	12	18	14.7741
UUUGCU	chr22:35738410-35738662(+)$1	252	173	179	10.6612

#otherMatches

#Struct PSSM
hhh[cc	chr17:75428644-75428898(+)$1	254	31	37	9.9354
+++ddd	chr9:33112319-33112585(-)$1	266	61	67	10.4999
FFFEEE	chrX:118602417-118602680(+)$1	263	77	83	11.0645
ddd[dd	chr17:94349-94627(-)$1	278	166	172	10.7419
f]eeee	chr12:123994542-123994824(-)$1	282	164	170	14.7741
======	chrM:1454-1664(+)$1	210	122	128	10.8225
33eeee	chr6:158993834-158994103(+)$1	269	206	212	14.7741
c[eeee	chr3:186504450-186504655(+)$1	205	31	37	14.7741
:fffff	chrX:132669918-132670156(-)$1	238	24	30	14.7741
eeeee5	chr4:83816906-83817165(-)$1	259	132	138	11.3870
a[cccm	chr19:45314400-45314631(+)$1	231	1	7	11.0645
c]dddd	chr18:43669431-43669704(-)$1	273	211	217	10.6612
:ddddn	chr2:241900619-241900886(-)$1	267	48	54	14.7741
{A{BBc	chr22:35738301-35738595(+)$1	294	106	112	10.5806
i::::E	chr6:64282663-64282912(+)$1	249	140	146	10.4999
666eee	chr17:57915200-57915439(+)$1	239	102	108	10.5806
d]cccJ	chr9:137228725-137228976(+)$1	251	80	86	11.0645
oodddd	chr16:50583734-50583987(+)$1	253	127	133	14.7741
iimmmm	chr7:158055950-158056222(-)$1	272	166	172	14.7741
!!cccn	chr16:89417671-89417951(-)$1	280	130	136	11.2258
c[eeee	chr3:186504423-186504632(+)$1	209	58	64	14.7741
e:::DD	chr3:33038273-33038540(-)$1	267	115	121	10.4999
c[eeee	chr3:186504455-186504661(+)$1	206	26	32	14.7741
dddfff	chr6:26031727-26031957(-)$1	230	158	164	11.3870
pppbb2	chr7:158126199-158126482(-)$1	283	205	211	10.5806
c[eeee	chr3:186504436-186504642(+)$1	206	45	51	14.7741
dd!!ff	chr3:197243781-197244066(-)$1	285	175	181	11.0645
c[eeee	chr3:186504413-186504619(+)$1	206	68	74	14.7741
IIIIII	chr3:197243866-197244164(-)$1	298	273	279	11.0645
"dddd!	chr3:65880829-65881090(-)$1	261	49	55	11.2258
e]dddd	chr17:80408101-80408385(-)$1	284	67	73	14.7741
::::::	chr17:7077807-7078029(-)$1	222	17	23	11.2258
mmmddd	chr16:81547155-81547394(+)$1	239	37	43	14.7741
ffffff	chr13:113767732-113768003(+)$1	271	99	105	10.6612
b22ccc	chr1:173835915-173836165(-)$1	250	93	99	11.3870
c[eeee	chr3:186504419-186504623(+)$1	204	62	68	14.7741
eemmmm	chr12:123994624-123994920(-)$1	296	260	266	14.7741
======	chrM:1452-1654(+)$1	202	124	130	10.8225
HHHYYF	chr1:2214787-2215053(+)$1	266	122	128	11.3870
gg:DDD	chrX:153063683-153063964(+)$1	281	50	56	10.7419
ffffff	chr8:9628306-9628679(+)$1	373	40	46	11.2258
eooooo	chr21:45945120-45945506(+)$1	386	175	181	14.7741
mmmddd	chr16:85838465-85838808(+)$1	343	309	315	10.7419
c[eeee	chr3:186504408-186504612(+)$1	204	73	79	14.7741
b22fff	chr20:62362986-62363236(+)$1	250	28	34	11.3870
nnnddd	chrX:132669837-132670063(-)$1	226	54	60	11.2258
c[eeee	chr3:186504461-186504670(+)$1	209	20	26	14.7741
::::::	chr3:32933418-32933652(+)$1	234	86	92	10.8225
"ccc[d	chr12:123994385-123994676(-)$1	291	16	22	14.7741
cc333a	chr10:5005580-5005821(+)$1	241	106	112	11.0645
pppppf	chr1:173835358-173835577(-)$1	219	20	26	10.6612
::dddd	chr14:94908788-94909044(-)$1	256	185	191	11.2258
JJJJcc	chr2:241900839-241901081(-)$1	242	9	15	11.3870
hhhhhl	chr3:186794103-186794344(+)$1	241	218	224	14.7741
ee::dd	chr1:12644496-12644773(-)$1	277	209	215	14.7741
mmmddd	chr13:76023508-76023786(-)$1	278	85	91	10.4999
B:::ff	chr16:81499130-81499397(+)$1	267	31	37	11.2258
JJJJJ:	chr14:50235029-50235305(+)$1	276	75	81	10.4999
iiiicc	chr11:62300156-62300416(-)$1	260	88	94	10.7419
FFFFFF	chr19:23505073-23505352(-)$1	279	44	50	11.2258
CC{DDD	chr7:158223993-158224249(-)$1	256	12	18	14.7741
uuuccc	chr22:35738410-35738662(+)$1	252	173	179	10.6612

#DB
(((.((	chr17:75428644-75428898(+)$1	1	31	37	9.9354
...(((	chr9:33112319-33112585(-)$1	1	61	67	10.4999
((((((	chrX:118602417-118602680(+)$1	1	77	83	11.0645
(((.((	chr17:94349-94627(-)$1	1	166	172	10.7419
).))))	chr12:123994542-123994824(-)$1	1	164	170	14.7741
((((((	chrM:1454-1664(+)$1	1	122	128	10.8225
..))))	chr6:158993834-158994103(+)$1	1	206	212	14.7741
(.((((	chr3:186504450-186504655(+)$1	1	31	37	14.7741
.(((((	chrX:132669918-132670156(-)$1	1	24	30	14.7741
))))).	chr4:83816906-83817165(-)$1	1	132	138	11.3870
(.(((.	chr19:45314400-45314631(+)$1	1	1	7	11.0645
).))))	chr18:43669431-43669704(-)$1	1	211	217	10.6612
.((((.	chr2:241900619-241900886(-)$1	1	48	54	14.7741
.(.(((	chr22:35738301-35738595(+)$1	1	106	112	10.5806
)....)	chr6:64282663-64282912(+)$1	1	140	146	10.4999
...)))	chr17:57915200-57915439(+)$1	1	102	108	10.5806
).)))(	chr9:137228725-137228976(+)$1	1	80	86	11.0645
..))))	chr16:50583734-50583987(+)$1	1	127	133	14.7741
((....	chr7:158055950-158056222(-)$1	1	166	172	14.7741
..(((.	chr16:89417671-89417951(-)$1	1	130	136	11.2258
(.((((	chr3:186504423-186504632(+)$1	1	58	64	14.7741
)...((	chr3:33038273-33038540(-)$1	1	115	121	10.4999
(.((((	chr3:186504455-186504661(+)$1	1	26	32	14.7741
((((((	chr6:26031727-26031957(-)$1	1	158	164	11.3870
...)).	chr7:158126199-158126482(-)$1	1	205	211	10.5806
(.((((	chr3:186504436-186504642(+)$1	1	45	51	14.7741
((..((	chr3:197243781-197244066(-)$1	1	175	181	11.0645
(.((((	chr3:186504413-186504619(+)$1	1	68	74	14.7741
))))))	chr3:197243866-197244164(-)$1	1	273	279	11.0645
.((((.	chr3:65880829-65881090(-)$1	1	49	55	11.2258
).))))	chr17:80408101-80408385(-)$1	1	67	73	14.7741
......	chr17:7077807-7078029(-)$1	1	17	23	11.2258
...)))	chr16:81547155-81547394(+)$1	1	37	43	14.7741
((((((	chr13:113767732-113768003(+)$1	1	99	105	10.6612
)..)))	chr1:173835915-173836165(-)$1	1	93	99	11.3870
(.((((	chr3:186504419-186504623(+)$1	1	62	68	14.7741
((....	chr12:123994624-123994920(-)$1	1	260	266	14.7741
((((((	chrM:1452-1654(+)$1	1	124	130	10.8225
)))..)	chr1:2214787-2215053(+)$1	1	122	128	11.3870
)).(((	chrX:153063683-153063964(+)$1	1	50	56	10.7419
((((((	chr8:9628306-9628679(+)$1	1	40	46	11.2258
(.....	chr21:45945120-45945506(+)$1	1	175	181	14.7741
...)))	chr16:85838465-85838808(+)$1	1	309	315	10.7419
(.((((	chr3:186504408-186504612(+)$1	1	73	79	14.7741
)..)))	chr20:62362986-62363236(+)$1	1	28	34	11.3870
...)))	chrX:132669837-132670063(-)$1	1	54	60	11.2258
(.((((	chr3:186504461-186504670(+)$1	1	20	26	14.7741
......	chr3:32933418-32933652(+)$1	1	86	92	10.8225
.(((.(	chr12:123994385-123994676(-)$1	1	16	22	14.7741
))...)	chr10:5005580-5005821(+)$1	1	106	112	11.0645
.....)	chr1:173835358-173835577(-)$1	1	20	26	10.6612
..((((	chr14:94908788-94909044(-)$1	1	185	191	11.2258
((((((	chr2:241900839-241901081(-)$1	1	9	15	11.3870
(((((.	chr3:186794103-186794344(+)$1	1	218	224	14.7741
))..((	chr1:12644496-12644773(-)$1	1	209	215	14.7741
...)))	chr13:76023508-76023786(-)$1	1	85	91	10.4999
(...((	chr16:81499130-81499397(+)$1	1	31	37	11.2258
(((((.	chr14:50235029-50235305(+)$1	1	75	81	10.4999
))))((	chr11:62300156-62300416(-)$1	1	88	94	10.7419
((((((	chr19:23505073-23505352(-)$1	1	44	50	11.2258
((.(((	chr7:158223993-158224249(-)$1	1	12	18	14.7741
...)))	chr22:35738410-35738662(+)$1	1	173	179	10.6612

#PSSM
U : 0.72	u : 0.25	C : 0.01	
G : 0.61	g : 0.25	C : 0.06	U : 0.04	A : 0.01	
U : 0.74	u : 0.25	
G : 0.64	g : 0.19	C : 0.04	A : 0.04	c : 0.04	u : 0.01	
C : 0.62	c : 0.14	A : 0.06	G : 0.03	U : 0.03	u : 0.03	a : 0.03	g : 0.03	
U : 0.66	u : 0.22	C : 0.04	A : 0.03	G : 0.01	g : 0.01	

#score	761.8064516129025
#seq	62
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_transcript_m1_run2.nuc.txt

#NT
cacacacacacacacacacacacacacacacacacacacacacuca	chr6:20472128-20472409(+)$1	281	129	175	112.9999
cacacacacacacacacacacacacacacacacacucacaGAAAUA	chr1:61591991-61592218(+)$1	227	121	167	100.8888
cacacacacacacacacauacacacacauaUGCACUGAUGCCUACA	chr6:43146170-43146418(+)$1	248	103	149	78.8888
cacacacacaugcauacacacacgcacacacacaugcauacacaca	chr19:19109306-19109540(-)$1	234	105	151	89.1111
cacacacacacacacacacacacacacacacacacacacacacaca	chrX:113150656-113150929(-)$1	273	12	58	117.2222
Uacacacacacacacacacacacacacacacacacauacacacaca	chr5:65373467-65373712(+)$1	245	119	165	110.6666
caugcauacauacauacauacauacauacacacacacacacacaca	chr17:20933560-20933860(-)$1	300	133	179	88.1111
cacaaacacacacacacacacucacacacacacacauacacauaca	chr3:8918394-8918702(-)$1	308	51	97	102.1111
accacacacacacacacacacacacacacacacacacacacacaca	chr7:44498376-44498637(-)$1	261	56	102	109.3333
cacacacccacauacacauacacacacacauacacauacacacaaa	chr14:65232837-65233086(-)$1	249	166	212	95.1111
cauacacauauauacacauauacacauauauacacacacacauaua	chr13:53039984-53040349(+)$1	365	160	206	76.9999
uacacacacacacacacacacacacacacacacacacacacacaca	chr4:48653025-48653318(-)$1	293	41	87	114.1111
uacacacacacacacacauacauacacacacacauauacauauaca	chr2:236988157-236988391(+)$1	234	39	85	92.6666
cacacacacacacacacacacacacacacacacacGGUUACAUACA	chr4:120464140-120464381(+)$1	241	63	109	98.5555
cacauauacaaagacgcauacacucacauagacacacacacauaca	chr16:4718850-4719111(+)$1	261	129	175	79.8888
cacacacacacacacacacacacacacacacacacacacacacaca	chr13:30779920-30780180(-)$1	260	61	107	117.2222
cacacacgcgcacacacacacacuccaacacacgcacacacauccc	chr4:5829239-5829539(+)$1	300	98	144	79.7777
Aacacacacacacacacacacacacacacacacacacacacacaca	chr13:113465463-113465721(+)$1	258	11	57	113.7777
uauggacuaauacacacacacacacacacacacacacacacacaca	chr7:119547031-119547292(-)$1	261	8	54	90.3333
cacacacacacacacacacacacacacacacacacacacacacaca	chr1:93784642-93784879(-)$1	237	19	65	117.2222
cacacacacccauccacauacacaugcacacacacacucacaucca	chr10:7419959-7420217(-)$1	258	158	204	81.6666
cacacacacacacacacacacacacacacacacacacacacacaca	chr2:42813651-42813933(+)$1	282	47	93	117.2222
cauacauacauacauacauacauacacacacacacauacacauaca	chr4:39767421-39767669(+)$1	248	114	160	90.5555
cacacacucauagacacauacacacagagacacacagagagauaca	chr2:97466916-97467185(+)$1	269	167	213	81.8888
cacacacacaaacacacacauacacgcauacacacacaaacacaca	chr2:127429761-127430151(+)$1	390	218	264	96.8888
Gacacaaacacacacacacacacacacacacacacacacacacaca	chr7:73015356-73015635(-)$1	279	82	128	109.4444
cacacacacacacacacacacacacacacacacacacacacacaca	chr11:43455681-43455949(+)$1	268	38	84	117.2222
cacacacacacacacacacacacacacacacacacacacacacaca	chr3:28351257-28351558(+)$1	301	175	221	117.2222
UAGacacacgcacacacgugcgcgcacgcacacacacacacacaca	chr20:35485070-35485344(-)$1	274	55	101	80.4444
cacacauccauagacacauacacacagaaacacaaccacagacaca	chr2:97467782-97468016(+)$1	234	158	204	79.7777
cacucacgcacacgcacacacacacacacacacacacacacacaca	chr7:72467897-72468139(-)$1	242	55	101	103.8888
cacacacacacacacacacacacacacacacacacacacacacaca	chr16:67209714-67210005(-)$1	291	1	47	117.2222
UAAacacacagacacacagacacacagacacacacagacacacaca	chr2:198714667-198714932(+)$1	265	51	97	95.7777
CCCAAacacacacacacacacacacacacacacacacacacacUAA	chr20:3946840-3947218(-)$1	378	59	105	99.8888
cacacacacacacacacacacacacacacacacacacacacacaca	chr12:69878811-69879059(+)$1	248	52	98	117.2222
aaaacacacacacacacacacacacacacacaccccccccccccca	chr1:29261822-29262071(+)$1	249	125	171	83.3333
Gacacacacacacacacacacacacacacacacacacacacacaca	chr5:118673781-118674088(+)$1	307	78	124	113.6666
cacacauauauagacacauaaacacacagacacacacauacacaca	chr16:4718468-4718742(+)$1	274	34	80	87.9999
cacacacacacacacacacacacacacacacacacacacacacaca	chr1:51157735-51157997(-)$1	262	32	78	117.2222
cacacacacacacacacacacacacacacacacacacacacacaca	chr22:21228522-21228795(+)$1	273	115	161	117.2222
cuuacacacacacacacacacacacacacacacacacacacacaca	chr9:94601510-94601728(-)$1	218	148	194	109.1111
cacacacacgugcaugcaaacacacacacacacgcacacacacaca	chrX:137950393-137950699(-)$1	306	125	171	89.3333
cacacacacacacacacacacacacacacacacacacacacacaca	chr1:40666361-40666625(+)$1	264	179	225	117.2222
cacacacacacacacacacacacacacacacacacacacacacaca	chr10:35714978-35715281(+)$1	303	61	107	117.2222

#otherMatches

#Struct PSSM
::::::::::::::::::::::::::::::::::::::::::::::	chr4:25790003-25790303(-)$1	300	61	107	117.2222
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:20472128-20472409(+)$1	281	129	175	112.9999
::::::::::::::::::::::::::::::::::::::ccc[dddd	chr1:61591991-61592218(+)$1	227	121	167	100.8888
::::::::::::::::ddddqqqqqqqqdddd::BBZZZDDDD:::	chr6:43146170-43146418(+)$1	248	103	149	78.8888
ffqqqqqqqqffffff:::::::cccqqqqqqqqccc:::::::::	chr19:19109306-19109540(-)$1	234	105	151	89.1111
::::::::::::::CCC{BB{CCCKKBBBB{CCCBBMMMMBB{GGG	chrX:113150656-113150929(-)$1	273	12	58	117.2222
::::::::::::::::::::::::::::::::::::::::::::::	chr5:65373467-65373712(+)$1	245	119	165	110.6666
[ccc^^^^^^^^^^^^^^^^^^^^ccc]eeeee::::::::::::F	chr17:20933560-20933860(-)$1	300	133	179	88.1111
::::::::::::::::::::::::::::::::::::::::::::::	chr3:8918394-8918702(-)$1	308	51	97	102.1111
::::::::::::::::::::::::::::::::::::::::::::::	chr7:44498376-44498637(-)$1	261	56	102	109.3333
::::::::::::::::::::::::::::::::::::::::::::::	chr14:65232837-65233086(-)$1	249	166	212	95.1111
::::bb[iiiiiiiii!!ffffff[ggggggguuuuuuuuuuuugg	chr13:53039984-53040349(+)$1	365	160	206	76.9999
KBB::::::::::::::::::::::::::::bb[dddd!!cccnnn	chr4:48653025-48653318(-)$1	293	41	87	114.1111
=^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:236988157-236988391(+)$1	234	39	85	92.6666
::::::::::::::::::::::::::::::::::::::::ccc[ao	chr4:120464140-120464381(+)$1	241	63	109	98.5555
::::::::::EEEEEDDDD:::::::::::::::::::::::::::	chr16:4718850-4719111(+)$1	261	129	175	79.8888
::::::::::::::::::::::::::::::::::::::::::::::	chr13:30779920-30780180(-)$1	260	61	107	117.2222
:::::::ccc^^^^^^^^^^^^^^^^^^^^^^ccc:::::::GGGG	chr4:5829239-5829539(+)$1	300	98	144	79.7777
::::::::::::::::::::::::::::::::::::::::::::::	chr13:113465463-113465721(+)$1	258	11	57	113.7777
cccooooooccc22ccc:::::::::::::::::::::::::::::	chr7:119547031-119547292(-)$1	261	8	54	90.3333
::::::::::::::::::::::::::::::::::::::::::::::	chr1:93784642-93784879(-)$1	237	19	65	117.2222
::::::::::::::::::::::::::::::::::::::::::::::	chr10:7419959-7420217(-)$1	258	158	204	81.6666
::::::::::::::::::::::::::::::::::::::::::::::	chr2:42813651-42813933(+)$1	282	47	93	117.2222
::::::::::::::::::::::::::::::::::::::::::::::	chr4:39767421-39767669(+)$1	248	114	160	90.5555
qqqqqqdddd>>>>>>>>>>>>>>>>>bb]ccc]bb]ffffff:::	chr2:97466916-97467185(+)$1	269	167	213	81.8888
GGG{EEEEE:::::::::::::::::::::::::::::::::::cc	chr2:127429761-127430151(+)$1	390	218	264	96.8888
c^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:73015356-73015635(-)$1	279	82	128	109.4444
::::::::::::::::::::::::::::::::::::::::::::::	chr11:43455681-43455949(+)$1	268	38	84	117.2222
dd::::::::::::::::::::::::::::::::::::::::::::	chr3:28351257-28351558(+)$1	301	175	221	117.2222
::::::::eeeeemmmmeeeeedddd[bb^^^^^^^^^^^^^^^^^	chr20:35485070-35485344(-)$1	274	55	101	80.4444
::::::::::::::::::::::::::::::::::::::::::::::	chr2:97467782-97468016(+)$1	234	158	204	79.7777
EEKKBB{CCC:::::::::::::::::::::::::::::::::::f	chr7:72467897-72468139(-)$1	242	55	101	103.8888
::::::::::::::::::::::::::::::::::::::::::::::	chr16:67209714-67210005(-)$1	291	1	47	117.2222
::::::::::::::::::::::::::::::::::::::::::::::	chr2:198714667-198714932(+)$1	265	51	97	95.7777
:::::::::::::::::::::::::::::::::::::::::::fff	chr20:3946840-3947218(-)$1	378	59	105	99.8888
::::::::::::::::::::::::::::::::::::::::::::::	chr12:69878811-69879059(+)$1	248	52	98	117.2222
::::::::::::::::::::::::::::::::::::::::::::::	chr1:29261822-29262071(+)$1	249	125	171	83.3333
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:118673781-118674088(+)$1	307	78	124	113.6666
::::::::::::::::::::::::::::::::::::::::::::::	chr16:4718468-4718742(+)$1	274	34	80	87.9999
eeee[a!!bbccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:51157735-51157997(-)$1	262	32	78	117.2222
ffff!!ccc!!bb[ccc[bb^^^^^^^^^^^^^^^^^^^^^^^^^^	chr22:21228522-21228795(+)$1	273	115	161	117.2222
::::::::::::::::::::::::::::::::::::::::::::::	chr9:94601510-94601728(-)$1	218	148	194	109.1111
E::::::::dddd[bbwwwwwwwwwwwwwwbb]dddd:::::::::	chrX:137950393-137950699(-)$1	306	125	171	89.3333
::::::::::::::::::::::::::::::::::::::::::::::	chr1:40666361-40666625(+)$1	264	179	225	117.2222
====^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:35714978-35715281(+)$1	303	61	107	117.2222

#DB
..............................................	chr4:25790003-25790303(-)$1	1	61	107	117.2222
..............................................	chr6:20472128-20472409(+)$1	1	129	175	112.9999
......................................(((.((((	chr1:61591991-61592218(+)$1	1	121	167	100.8888
................((((........))))..))...))))...	chr6:43146170-43146418(+)$1	1	103	149	78.8888
((........)))))).......(((........))).........	chr19:19109306-19109540(-)$1	1	105	151	89.1111
..............(((.((.(((..((((.(((((....((.(((	chrX:113150656-113150929(-)$1	1	12	58	117.2222
..............................................	chr5:65373467-65373712(+)$1	1	119	165	110.6666
.(((....................))).)))))............)	chr17:20933560-20933860(-)$1	1	133	179	88.1111
..............................................	chr3:8918394-8918702(-)$1	1	51	97	102.1111
..............................................	chr7:44498376-44498637(-)$1	1	56	102	109.3333
..............................................	chr14:65232837-65233086(-)$1	1	166	212	95.1111
....((.(((((((((..((((((.(((((((............))	chr13:53039984-53040349(+)$1	1	160	206	76.9999
.((............................((.((((..(((...	chr4:48653025-48653318(-)$1	1	41	87	114.1111
(.............................................	chr2:236988157-236988391(+)$1	1	39	85	92.6666
........................................(((.(.	chr4:120464140-120464381(+)$1	1	63	109	98.5555
..........(((((((((...........................	chr16:4718850-4719111(+)$1	1	129	175	79.8888
..............................................	chr13:30779920-30780180(-)$1	1	61	107	117.2222
.......(((......................))).......((((	chr4:5829239-5829539(+)$1	1	98	144	79.7777
..............................................	chr13:113465463-113465721(+)$1	1	11	57	113.7777
(((......)))..))).............................	chr7:119547031-119547292(-)$1	1	8	54	90.3333
..............................................	chr1:93784642-93784879(-)$1	1	19	65	117.2222
..............................................	chr10:7419959-7420217(-)$1	1	158	204	81.6666
..............................................	chr2:42813651-42813933(+)$1	1	47	93	117.2222
..............................................	chr4:39767421-39767669(+)$1	1	114	160	90.5555
......)))).................)).))).)).))))))...	chr2:97466916-97467185(+)$1	1	167	213	81.8888
(((.(((((...................................((	chr2:127429761-127430151(+)$1	1	218	264	96.8888
(.............................................	chr7:73015356-73015635(-)$1	1	82	128	109.4444
..............................................	chr11:43455681-43455949(+)$1	1	38	84	117.2222
))............................................	chr3:28351257-28351558(+)$1	1	175	221	117.2222
........(((((....)))))((((.((.................	chr20:35485070-35485344(-)$1	1	55	101	80.4444
..............................................	chr2:97467782-97468016(+)$1	1	158	204	79.7777
((..((.(((...................................(	chr7:72467897-72468139(-)$1	1	55	101	103.8888
..............................................	chr16:67209714-67210005(-)$1	1	1	47	117.2222
..............................................	chr2:198714667-198714932(+)$1	1	51	97	95.7777
...........................................(((	chr20:3946840-3947218(-)$1	1	59	105	99.8888
..............................................	chr12:69878811-69879059(+)$1	1	52	98	117.2222
..............................................	chr1:29261822-29262071(+)$1	1	125	171	83.3333
(((...........................................	chr5:118673781-118674088(+)$1	1	78	124	113.6666
..............................................	chr16:4718468-4718742(+)$1	1	34	80	87.9999
((((.(..(((((.................................	chr1:51157735-51157997(-)$1	1	32	78	117.2222
((((..(((..((.(((.((..........................	chr22:21228522-21228795(+)$1	1	115	161	117.2222
..............................................	chr9:94601510-94601728(-)$1	1	148	194	109.1111
(........((((.((..............)).)))).........	chrX:137950393-137950699(-)$1	1	125	171	89.3333
..............................................	chr1:40666361-40666625(+)$1	1	179	225	117.2222
((((..........................................	chr10:35714978-35715281(+)$1	1	61	107	117.2222

#PSSM
c : 0.73	U : 0.06	u : 0.06	a : 0.04	G : 0.04	A : 0.02	C : 0.02	
a : 0.88	A : 0.04	c : 0.02	C : 0.02	u : 0.02	
c : 0.80	u : 0.11	G : 0.02	A : 0.02	C : 0.02	a : 0.02	
a : 0.91	g : 0.04	u : 0.02	A : 0.02	
c : 0.91	a : 0.02	u : 0.02	g : 0.02	A : 0.02	
a : 1.00	
c : 0.86	u : 0.11	a : 0.02	
a : 0.86	c : 0.04	g : 0.04	u : 0.04	
c : 0.93	u : 0.04	a : 0.02	
a : 0.91	g : 0.06	c : 0.02	
c : 0.73	u : 0.20	a : 0.04	g : 0.02	
a : 0.95	g : 0.04	
c : 0.84	g : 0.08	u : 0.06	
a : 0.95	c : 0.02	g : 0.02	
c : 0.91	u : 0.08	
a : 0.95	g : 0.04	
c : 1.00	
a : 0.97	g : 0.02	
c : 0.68	u : 0.26	g : 0.02	a : 0.02	
a : 0.97	g : 0.02	
c : 0.93	u : 0.04	a : 0.02	
a : 0.95	u : 0.02	g : 0.02	
c : 0.93	u : 0.06	
a : 0.91	g : 0.04	u : 0.04	
c : 0.97	u : 0.02	
a : 0.93	g : 0.04	c : 0.02	
c : 0.86	g : 0.06	u : 0.04	a : 0.02	
a : 0.97	g : 0.02	
c : 0.84	u : 0.08	g : 0.04	a : 0.02	
a : 1.00	
c : 0.91	u : 0.04	U : 0.02	g : 0.02	
a : 0.97	G : 0.02	
c : 0.97	C : 0.02	
a : 0.91	g : 0.04	A : 0.02	c : 0.02	
c : 0.91	u : 0.04	C : 0.02	a : 0.02	
a : 0.86	c : 0.04	u : 0.02	U : 0.02	g : 0.02	G : 0.02	
c : 0.80	u : 0.11	G : 0.04	g : 0.04	
a : 0.91	A : 0.02	U : 0.02	u : 0.02	c : 0.02	
c : 0.86	U : 0.04	u : 0.04	g : 0.02	a : 0.02	
a : 0.93	G : 0.02	A : 0.02	c : 0.02	
c : 0.86	C : 0.04	g : 0.04	G : 0.02	u : 0.02	
a : 0.91	A : 0.04	C : 0.02	c : 0.02	
c : 0.75	u : 0.17	U : 0.04	A : 0.02	
a : 0.82	A : 0.06	c : 0.06	u : 0.02	U : 0.02	
c : 0.86	C : 0.04	U : 0.02	a : 0.02	u : 0.02	A : 0.02	
a : 0.88	A : 0.08	c : 0.02	

#score	4560.888888888882
#seq	45
#width	46
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_UTR_m2_run1.nuc.txt

#NT
GGCGAGGGG	chr6:32133957-32134222(+)$1	265	51	60	18.8867
ggggacggg	chr4:2935988-2936298(-)$1	310	45	54	18.2264
GGGGAGGGG	chr19:1650517-1650760(-)$1	243	9	18	22.9433
GGGGCGGGG	chr2:61404991-61405237(+)$1	246	119	128	19.7358
GGGGAGGGA	chr14:32546365-32546619(+)$1	254	18	27	18.2264
GGGGUGGGG	chr19:46285662-46285912(-)$1	250	113	122	19.5471
AGGGAGGGG	chr5:68664911-68665167(-)$1	256	52	61	18.6981
GGGGAGGGC	chr3:45730918-45731230(+)$1	312	136	145	18.2264
GGGGAGGGG	chr17:46131863-46132116(+)$1	253	54	63	22.9433
GGGGUGGGG	chr7:5569448-5569689(-)$1	241	41	50	19.5471
GUGGAGGGG	chr11:554406-554730(+)$1	324	3	12	18.5094
GGGCAGGGG	chr1:26232505-26232755(-)$1	250	94	103	18.6981
gcggagggg	chr2:128144938-128145250(-)$1	312	151	160	18.4150
GGGGUGGGG	chr9:139904818-139905104(-)$1	286	85	94	19.5471
GGGGAGGGG	chr19:41770811-41771095(+)$1	284	96	105	22.9433
GGGGAGGGG	chr17:46653873-46654118(-)$1	245	189	198	22.9433
GGGGAGGAG	chr7:77166500-77166752(+)$1	252	217	226	18.3207
GGGGAGCGG	chr19:5719961-5720213(-)$1	252	101	110	18.5094
GGGGAGGGG	chr2:48010954-48011223(+)$1	269	9	18	22.9433
GGGGCGGGG	chr12:109124315-109124608(-)$1	293	34	43	19.7358
GGGGCGGGG	chr19:56185510-56185779(+)$1	269	77	86	19.7358
AGGGAGGGG	chr19:47724075-47724363(-)$1	288	99	108	18.6981
GUGGAGGGG	chr19:2425958-2426272(-)$1	314	17	26	18.5094
GGAGAGGGG	chr16:67977016-67977320(-)$1	304	46	55	18.7924
GGGAAGGGG	chr17:79866767-79867103(-)$1	336	120	129	18.5094
ggggagggg	chr7:140178737-140179006(-)$1	269	78	87	22.9433
GGUGAGGGG	chr20:62330573-62330809(-)$1	236	38	47	18.7924
GGGUAGGGG	chr15:40758374-40758664(+)$1	290	1	10	18.5094
gggcagggg	chr7:2292109-2292389(-)$1	280	0	9	18.6981
GGGGAGGGG	chr6:34857006-34857331(+)$1	325	140	149	22.9433
GGUGAGGGG	chr20:62330492-62330773(-)$1	281	2	11	18.7924
AGGGAGGGG	chr1:11849082-11849327(-)$1	245	214	223	18.6981
ggggugggg	chr16:447636-447891(+)$1	255	54	63	19.5471
GGGGAGAGG	chr1:28607547-28607824(+)$1	277	135	144	18.5094
GGGGAGGGG	chr9:139249239-139249543(+)$1	304	252	261	22.9433
GGGGAGGUG	chr12:57504855-57505164(-)$1	309	144	153	18.4150
GGGGCGGGG	chr3:45730811-45731099(+)$1	288	15	24	19.7358
GGGGAGCGG	chr5:154136527-154136840(+)$1	313	225	234	18.5094
GGGGAAGGG	chr1:36787654-36787903(+)$1	249	93	102	18.2264
GGGGCGGGG	chr16:30662167-30662480(+)$1	313	12	21	19.7358
gaggagggg	chr19:49964744-49965010(+)$1	266	5	14	18.4150
ggggagggg	chr15:64752848-64753082(+)$1	234	24	33	22.9433
ggggagggg	chr22:50013594-50013832(-)$1	238	81	90	22.9433
GGCGAGGGG	chr12:109124823-109125120(-)$1	297	15	24	18.8867
GGGGAGGUG	chr19:48983011-48983241(+)$1	230	90	99	18.4150
AGGGAGGGG	chr22:39917006-39917282(+)$1	276	215	224	18.6981
GGGGAGAGG	chr22:40368805-40369145(+)$1	340	191	200	18.5094
GGGGCGGGG	chr12:109124483-109124811(-)$1	328	237	246	19.7358
GGAGAGGGG	chr2:27249713-27249969(+)$1	256	44	53	18.7924
GGGGCGGGG	chr5:43121612-43122005(+)$1	393	76	85	19.7358
GGGCAGGGG	chr12:57624649-57624933(+)$1	284	151	160	18.6981
GGGGUGGGG	chr22:19951897-19952172(+)$1	275	254	263	19.5471

#otherMatches

#Struct PSSM
!!aoooooo	chr10:103454580-103454862(-)$1	282	92	101	18.8867
cbb]fffff	chr6:32133957-32134222(+)$1	265	51	60	18.8867
IIIIIIbb!	chr4:2935988-2936298(-)$1	310	45	54	18.2264
=========	chr19:1650517-1650760(-)$1	243	9	18	22.9433
DDDD}BBDD	chr2:61404991-61405237(+)$1	246	119	128	19.7358
IILLLBB{B	chr14:32546365-32546619(+)$1	254	18	27	18.2264
~~DDDD}DD	chr19:46285662-46285912(-)$1	250	113	122	19.5471
gggg:ccc"	chr5:68664911-68665167(-)$1	256	52	61	18.6981
c]a22iiii	chr3:45730918-45731230(+)$1	312	136	145	18.2264
!!ffffffo	chr17:46131863-46132116(+)$1	253	54	63	22.9433
b!!ddddnn	chr7:5569448-5569689(-)$1	241	41	50	19.5471
GGGGCCC{F	chr11:554406-554730(+)$1	324	3	12	18.5094
dddd[ccc[	chr1:26232505-26232755(-)$1	250	94	103	18.6981
f========	chr2:128144938-128145250(-)$1	312	151	160	18.4150
II:::a[gg	chr9:139904818-139905104(-)$1	286	85	94	19.5471
d22a]ffff	chr19:41770811-41771095(+)$1	284	96	105	22.9433
iiiiiiii]	chr17:46653873-46654118(-)$1	245	189	198	22.9433
xxxxxxxxx	chr7:77166500-77166752(+)$1	252	217	226	18.3207
FFFFFF{CC	chr19:5719961-5720213(-)$1	252	101	110	18.5094
iii!!ccc[	chr2:48010954-48011223(+)$1	269	9	18	22.9433
D{HHHHHHH	chr12:109124315-109124608(-)$1	293	34	43	19.7358
a]cccGGGG	chr19:56185510-56185779(+)$1	269	77	86	19.7358
DDDDYYDDD	chr19:47724075-47724363(-)$1	288	99	108	18.6981
dddd[iiii	chr19:2425958-2426272(-)$1	314	17	26	18.5094
dd:HHHHHH	chr16:67977016-67977320(-)$1	304	46	55	18.7924
c]a]dddd:	chr17:79866767-79867103(-)$1	336	120	129	18.5094
CC{A{DDDD	chr7:140178737-140179006(-)$1	269	78	87	22.9433
g]a]bbfff	chr20:62330573-62330809(-)$1	236	38	47	18.7924
:::::::::	chr15:40758374-40758664(+)$1	290	1	10	18.5094
:::::::::	chr7:2292109-2292389(-)$1	280	0	9	18.6981
e$$$$$ddd	chr6:34857006-34857331(+)$1	325	140	149	22.9433
::::::fff	chr20:62330492-62330773(-)$1	281	2	11	18.7924
JJJJJJJJJ	chr1:11849082-11849327(-)$1	245	214	223	18.6981
GGGGGGG{B	chr16:447636-447891(+)$1	255	54	63	19.5471
=========	chr1:28607547-28607824(+)$1	277	135	144	18.5094
bb]a77777	chr9:139249239-139249543(+)$1	304	252	261	22.9433
:::::ccc[	chr12:57504855-57505164(-)$1	309	144	153	18.4150
llleeeee4	chr3:45730811-45731099(+)$1	288	15	24	19.7358
ffffffeee	chr5:154136527-154136840(+)$1	313	225	234	18.5094
dddd22ddd	chr1:36787654-36787903(+)$1	249	93	102	18.2264
ddbb"""ee	chr16:30662167-30662480(+)$1	313	12	21	19.7358
EE{A{FFFF	chr19:49964744-49965010(+)$1	266	5	14	18.4150
[bb$$$$$c	chr15:64752848-64753082(+)$1	234	24	33	22.9433
KHHHHHHHH	chr22:50013594-50013832(-)$1	238	81	90	22.9433
:bbnnnnnb	chr12:109124823-109125120(-)$1	297	15	24	18.8867
bbbb[a[hh	chr19:48983011-48983241(+)$1	230	90	99	18.4150
:ddddffff	chr22:39917006-39917282(+)$1	276	215	224	18.6981
hh^^^^^^^	chr22:40368805-40369145(+)$1	340	191	200	18.5094
ggggg4444	chr12:109124483-109124811(-)$1	328	237	246	19.7358
gggg[gggg	chr2:27249713-27249969(+)$1	256	44	53	18.7924
ee]bb4444	chr5:43121612-43122005(+)$1	393	76	85	19.7358
DDD{EEEEE	chr12:57624649-57624933(+)$1	284	151	160	18.6981
gggggggpp	chr22:19951897-19952172(+)$1	275	254	263	19.5471

#DB
..(......	chr10:103454580-103454862(-)$1	1	92	101	18.8867
))).)))))	chr6:32133957-32134222(+)$1	1	51	60	18.8867
((((((((.	chr4:2935988-2936298(-)$1	1	45	54	18.2264
(((((((((	chr19:1650517-1650760(-)$1	1	9	18	22.9433
)))).))))	chr2:61404991-61405237(+)$1	1	119	128	19.7358
((...((.(	chr14:32546365-32546619(+)$1	1	18	27	18.2264
..)))).))	chr19:46285662-46285912(-)$1	1	113	122	19.5471
)))).(((.	chr5:68664911-68665167(-)$1	1	52	61	18.6981
).)..))))	chr3:45730918-45731230(+)$1	1	136	145	18.2264
..((((((.	chr17:46131863-46132116(+)$1	1	54	63	22.9433
(..((((..	chr7:5569448-5569689(-)$1	1	41	50	19.5471
(((((((.(	chr11:554406-554730(+)$1	1	3	12	18.5094
((((.(((.	chr1:26232505-26232755(-)$1	1	94	103	18.6981
)))))))))	chr2:128144938-128145250(-)$1	1	151	160	18.4150
((...(.((	chr9:139904818-139905104(-)$1	1	85	94	19.5471
)..).))))	chr19:41770811-41771095(+)$1	1	96	105	22.9433
)))))))).	chr17:46653873-46654118(-)$1	1	189	198	22.9433
.........	chr7:77166500-77166752(+)$1	1	217	226	18.3207
((((((.((	chr19:5719961-5720213(-)$1	1	101	110	18.5094
(((..(((.	chr2:48010954-48011223(+)$1	1	9	18	22.9433
(.(((((((	chr12:109124315-109124608(-)$1	1	34	43	19.7358
).)))((((	chr19:56185510-56185779(+)$1	1	77	86	19.7358
))))..)))	chr19:47724075-47724363(-)$1	1	99	108	18.6981
((((.((((	chr19:2425958-2426272(-)$1	1	17	26	18.5094
)).((((((	chr16:67977016-67977320(-)$1	1	46	55	18.7924
).).)))).	chr17:79866767-79867103(-)$1	1	120	129	18.5094
((.(.((((	chr7:140178737-140179006(-)$1	1	78	87	22.9433
).).))(((	chr20:62330573-62330809(-)$1	1	38	47	18.7924
.........	chr15:40758374-40758664(+)$1	1	1	10	18.5094
.........	chr7:2292109-2292389(-)$1	1	0	9	18.6981
(.....(((	chr6:34857006-34857331(+)$1	1	140	149	22.9433
......(((	chr20:62330492-62330773(-)$1	1	2	11	18.7924
)))))))))	chr1:11849082-11849327(-)$1	1	214	223	18.6981
(((((((.(	chr16:447636-447891(+)$1	1	54	63	19.5471
(((((((((	chr1:28607547-28607824(+)$1	1	135	144	18.5094
)).).....	chr9:139249239-139249543(+)$1	1	252	261	22.9433
.....(((.	chr12:57504855-57505164(-)$1	1	144	153	18.4150
...))))).	chr3:45730811-45731099(+)$1	1	15	24	19.7358
))))))(((	chr5:154136527-154136840(+)$1	1	225	234	18.5094
))))..)))	chr1:36787654-36787903(+)$1	1	93	102	18.2264
((((...((	chr16:30662167-30662480(+)$1	1	12	21	19.7358
((.(.((((	chr19:49964744-49965010(+)$1	1	5	14	18.4150
.((.....(	chr15:64752848-64753082(+)$1	1	24	33	22.9433
.((((((((	chr22:50013594-50013832(-)$1	1	81	90	22.9433
.((.....)	chr12:109124823-109125120(-)$1	1	15	24	18.8867
((((.(.((	chr19:48983011-48983241(+)$1	1	90	99	18.4150
.((((((((	chr22:39917006-39917282(+)$1	1	215	224	18.6981
((.......	chr22:40368805-40369145(+)$1	1	191	200	18.5094
)))))....	chr12:109124483-109124811(-)$1	1	237	246	19.7358
((((.((((	chr2:27249713-27249969(+)$1	1	44	53	18.7924
)).))....	chr5:43121612-43122005(+)$1	1	76	85	19.7358
(((.(((((	chr12:57624649-57624933(+)$1	1	151	160	18.6981
(((((((..	chr22:19951897-19952172(+)$1	1	254	263	19.5471

#PSSM
G : 0.75	g : 0.16	A : 0.07	
G : 0.79	g : 0.13	U : 0.03	c : 0.01	a : 0.01	
G : 0.71	g : 0.15	C : 0.03	A : 0.03	U : 0.03	c : 0.01	
G : 0.75	g : 0.15	C : 0.03	A : 0.01	U : 0.01	c : 0.01	
A : 0.62	a : 0.15	C : 0.13	U : 0.07	u : 0.01	
G : 0.81	g : 0.15	c : 0.01	A : 0.01	
G : 0.75	g : 0.16	C : 0.03	A : 0.03	
G : 0.77	g : 0.16	U : 0.03	A : 0.01	
G : 0.79	g : 0.16	A : 0.01	C : 0.01	

#score	1040.9999999999998
#seq	53
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_transcript_m2_run1.nuc.txt

#NT
UUUCUUUA	chr2:27257836-27258132(+)$1	296	105	113	16.3214
UUUCUUUU	chr2:55889039-55889309(-)$1	270	136	144	19.8928
UUUCUUUU	chr1:225592123-225592372(-)$1	249	95	103	19.8928
UUUUUUUU	chr11:5367427-5367744(-)$1	317	113	121	15.6964
uuucuuuu	chr8:30919787-30920031(+)$1	244	9	17	19.8928
UUACUUUU	chr2:27449242-27449495(+)$1	253	74	82	15.4285
UUUCUUUG	chr8:48843253-48843504(-)$1	251	131	139	16.5892
CUUCUUUU	chr1:236706708-236707003(+)$1	295	140	148	15.6964
UUUCUUUC	chr2:74230082-74230329(+)$1	247	23	31	16.7678
CUUCUUUU	chr1:206820593-206820886(+)$1	293	7	15	15.6964
UUUCCUUU	chr1:153949082-153949394(-)$1	312	132	140	15.3392
UUUCUUUC	chr3:156869801-156870030(-)$1	229	83	91	16.7678
UUUCUCUU	chr4:2513533-2513826(+)$1	293	116	124	15.6071
AUUCUUUU	chr12:6709754-6709982(-)$1	228	127	135	15.6071
UUUCUUUC	chr3:167405357-167405622(-)$1	265	58	66	16.7678
UUUCUUUU	chr1:38481868-38482136(+)$1	268	145	153	19.8928
UUUGUUUU	chr3:160121949-160122204(+)$1	255	146	154	15.6964
UUUCUCUU	chr11:9446541-9446824(+)$1	283	134	142	15.6071
UUUCAUUU	chr4:80954566-80954873(-)$1	307	75	83	15.2500
UUUCUUUG	chr7:8196716-8196998(-)$1	282	143	151	16.5892
UUUCCUUU	chr12:110974769-110975039(-)$1	270	96	104	15.3392
UUUCUUUG	chr2:74755035-74755282(-)$1	247	138	146	16.5892
UUUCUUCU	chr2:32800078-32800355(+)$1	277	125	133	15.3392
UUCCUUUU	chr19:13050746-13050996(+)$1	250	42	50	15.5178
uuuuuuuu	chr17:74557681-74557886(+)$1	205	122	130	15.6964
UCUCUUUU	chr2:39515329-39515581(-)$1	252	137	145	15.3392
UUUCUUUU	chr15:69738195-69738461(+)$1	266	136	144	19.8928
UUUCUUUU	chr13:51517323-51517618(+)$1	295	122	130	19.8928
UUUCUAUU	chr1:52280343-52280585(-)$1	242	177	185	15.4285
UUUCUUUG	chr6:49574888-49575105(-)$1	217	117	125	16.5892
UUUCUUUG	chr17:26939576-26939855(-)$1	279	135	143	16.5892
UUUCUUUU	chr17:29070169-29070418(+)$1	249	98	106	19.8928
UUUCUUUU	chr1:100176372-100176618(-)$1	246	97	105	19.8928
UUUCUGUU	chrX:153296790-153297060(-)$1	270	140	148	15.4285
UUUCUUAU	chrX:44948825-44949083(+)$1	258	149	157	15.2500
UUUCUCUU	chr7:135310826-135311106(+)$1	280	47	55	15.6071
UUUCUUUA	chr18:210223-210495(+)$1	272	153	161	16.3214
ugucuuuu	chr2:15674642-15674932(-)$1	290	75	83	15.2500
GUUCUUUU	chr9:134019506-134019750(+)$1	244	28	36	15.5178
UUUCUUUC	chr3:12626343-12626629(-)$1	286	135	143	16.7678
UCUCUUUU	chr19:47725026-47725330(-)$1	304	141	149	15.3392
UUUCUUUU	chr1:70693932-70694184(+)$1	252	33	41	19.8928
UUUCUUUC	chr12:121783728-121784000(-)$1	272	205	213	16.7678
UUUAUUUU	chr12:56194273-56194541(-)$1	268	43	51	15.7857
UUUCUUCU	chr2:152324831-152325105(+)$1	274	142	150	15.3392
UUUGUUUU	chr4:83816915-83817164(-)$1	249	23	31	15.6964
uuuauuuu	chr6:99848078-99848301(-)$1	223	77	85	15.7857
UUUCUUUU	chr19:5587912-5588152(-)$1	240	146	154	19.8928
UUCCUUUU	chr10:70525493-70525744(+)$1	251	48	56	15.5178
UUGCUUUU	chr7:12420209-12420510(-)$1	301	41	49	15.5178
UUGCUUUU	chr2:97850922-97851185(+)$1	263	119	127	15.5178
AUUCUUUU	chr1:43308038-43308309(+)$1	271	69	77	15.6071
UUUAUUUU	chr10:32101617-32101886(-)$1	269	93	101	15.7857
CUUCUUUU	chr1:22074606-22074858(-)$1	252	57	65	15.6964
UUUCUUUC	chr9:131028060-131028305(-)$1	245	100	108	16.7678

#otherMatches

#Struct PSSM
::::::::	chr2:114691590-114691859(+)$1	269	131	139	16.7678
+++++++f	chr2:27257836-27258132(+)$1	296	105	113	16.3214
rrrr====	chr2:55889039-55889309(-)$1	270	136	144	19.8928
ggg!!a!!	chr1:225592123-225592372(-)$1	249	95	103	19.8928
:::::::i	chr11:5367427-5367744(-)$1	317	113	121	15.6964
ddduuuuu	chr8:30919787-30920031(+)$1	244	9	17	19.8928
ee]bb555	chr2:27449242-27449495(+)$1	253	74	82	15.4285
ddd333ff	chr8:48843253-48843504(-)$1	251	131	139	16.5892
55555hhh	chr1:236706708-236707003(+)$1	295	140	148	15.6964
grrrrrrr	chr2:74230082-74230329(+)$1	247	23	31	16.7678
FFFF{CCC	chr1:206820593-206820886(+)$1	293	7	15	15.6964
fffff333	chr1:153949082-153949394(-)$1	312	132	140	15.3392
fff:ffff	chr3:156869801-156870030(-)$1	229	83	91	16.7678
eeeee]dd	chr4:2513533-2513826(+)$1	293	116	124	15.6071
iiiiivvv	chr12:6709754-6709982(-)$1	228	127	135	15.6071
dddnnnnn	chr3:167405357-167405622(-)$1	265	58	66	16.7678
========	chr1:38481868-38482136(+)$1	268	145	153	19.8928
ffffqqqq	chr3:160121949-160122204(+)$1	255	146	154	15.6964
::::::::	chr11:9446541-9446824(+)$1	283	134	142	15.6071
::::::::	chr4:80954566-80954873(-)$1	307	75	83	15.2500
GGGYYDDD	chr7:8196716-8196998(-)$1	282	143	151	16.5892
$$$ccc[c	chr12:110974769-110975039(-)$1	270	96	104	15.3392
=======!	chr2:74755035-74755282(-)$1	247	138	146	16.5892
ffccc333	chr2:32800078-32800355(+)$1	277	125	133	15.3392
b[ccc[dd	chr19:13050746-13050996(+)$1	250	42	50	15.5178
^^^^^^^^	chr17:74557681-74557886(+)$1	205	122	130	15.6964
[ffffff!	chr2:39515329-39515581(-)$1	252	137	145	15.3392
ggg[eeee	chr15:69738195-69738461(+)$1	266	136	144	19.8928
===bb%%%	chr13:51517323-51517618(+)$1	295	122	130	19.8928
GGGGGGG:	chr1:52280343-52280585(-)$1	242	177	185	15.4285
888888ff	chr6:49574888-49575105(-)$1	217	117	125	16.5892
========	chr17:26939576-26939855(-)$1	279	135	143	16.5892
ffffffss	chr17:29070169-29070418(+)$1	249	98	106	19.8928
:::::::G	chr1:100176372-100176618(-)$1	246	97	105	19.8928
>>>ccc]g	chrX:153296790-153297060(-)$1	270	140	148	15.4285
::::::::	chrX:44948825-44949083(+)$1	258	149	157	15.2500
======[b	chr7:135310826-135311106(+)$1	280	47	55	15.6071
gggggg]b	chr18:210223-210495(+)$1	272	153	161	16.3214
cc::::::	chr2:15674642-15674932(-)$1	290	75	83	15.2500
dddd:::e	chr9:134019506-134019750(+)$1	244	28	36	15.5178
hhcccppp	chr3:12626343-12626629(-)$1	286	135	143	16.7678
eeeeeppp	chr19:47725026-47725330(-)$1	304	141	149	15.3392
:cccmmmm	chr1:70693932-70694184(+)$1	252	33	41	19.8928
FFFFFFLL	chr12:121783728-121784000(-)$1	272	205	213	16.7678
dd[bbggg	chr12:56194273-56194541(-)$1	268	43	51	15.7857
^^^^^^^^	chr2:152324831-152325105(+)$1	274	142	150	15.3392
LLLFFFFF	chr4:83816915-83817164(-)$1	249	23	31	15.6964
eeee22bb	chr6:99848078-99848301(-)$1	223	77	85	15.7857
@@@@@@@@	chr19:5587912-5588152(-)$1	240	146	154	19.8928
GGFFFFFF	chr10:70525493-70525744(+)$1	251	48	56	15.5178
dddqqqqq	chr7:12420209-12420510(-)$1	301	41	49	15.5178
2ggggggg	chr2:97850922-97851185(+)$1	263	119	127	15.5178
bppppppp	chr1:43308038-43308309(+)$1	271	69	77	15.6071
^^^^^^^^	chr10:32101617-32101886(-)$1	269	93	101	15.7857
iiiiiiii	chr1:22074606-22074858(-)$1	252	57	65	15.6964
iiiiiii:	chr9:131028060-131028305(-)$1	245	100	108	16.7678

#DB
........	chr2:114691590-114691859(+)$1	1	131	139	16.7678
.......(	chr2:27257836-27258132(+)$1	1	105	113	16.3214
....))))	chr2:55889039-55889309(-)$1	1	136	144	19.8928
(((..(..	chr1:225592123-225592372(-)$1	1	95	103	19.8928
.......(	chr11:5367427-5367744(-)$1	1	113	121	15.6964
(((.....	chr8:30919787-30920031(+)$1	1	9	17	19.8928
)).))...	chr2:27449242-27449495(+)$1	1	74	82	15.4285
)))...))	chr8:48843253-48843504(-)$1	1	131	139	16.5892
.....)))	chr1:236706708-236707003(+)$1	1	140	148	15.6964
(.......	chr2:74230082-74230329(+)$1	1	23	31	16.7678
((((.(((	chr1:206820593-206820886(+)$1	1	7	15	15.6964
)))))...	chr1:153949082-153949394(-)$1	1	132	140	15.3392
))).((((	chr3:156869801-156870030(-)$1	1	83	91	16.7678
))))).))	chr4:2513533-2513826(+)$1	1	116	124	15.6071
(((((...	chr12:6709754-6709982(-)$1	1	127	135	15.6071
(((.....	chr3:167405357-167405622(-)$1	1	58	66	16.7678
((((((((	chr1:38481868-38482136(+)$1	1	145	153	19.8928
((((....	chr3:160121949-160122204(+)$1	1	146	154	15.6964
........	chr11:9446541-9446824(+)$1	1	134	142	15.6071
........	chr4:80954566-80954873(-)$1	1	75	83	15.2500
)))..)))	chr7:8196716-8196998(-)$1	1	143	151	16.5892
...(((.(	chr12:110974769-110975039(-)$1	1	96	104	15.3392
(((((((.	chr2:74755035-74755282(-)$1	1	138	146	16.5892
)))))...	chr2:32800078-32800355(+)$1	1	125	133	15.3392
(.(((.((	chr19:13050746-13050996(+)$1	1	42	50	15.5178
........	chr17:74557681-74557886(+)$1	1	122	130	15.6964
.((((((.	chr2:39515329-39515581(-)$1	1	137	145	15.3392
(((.((((	chr15:69738195-69738461(+)$1	1	136	144	19.8928
(((((...	chr13:51517323-51517618(+)$1	1	122	130	19.8928
))))))).	chr1:52280343-52280585(-)$1	1	177	185	15.4285
......))	chr6:49574888-49575105(-)$1	1	117	125	16.5892
((((((((	chr17:26939576-26939855(-)$1	1	135	143	16.5892
((((((..	chr17:29070169-29070418(+)$1	1	98	106	19.8928
.......)	chr1:100176372-100176618(-)$1	1	97	105	19.8928
...))).)	chrX:153296790-153297060(-)$1	1	140	148	15.4285
........	chrX:44948825-44949083(+)$1	1	149	157	15.2500
((((((.(	chr7:135310826-135311106(+)$1	1	47	55	15.6071
)))))).)	chr18:210223-210495(+)$1	1	153	161	16.3214
))......	chr2:15674642-15674932(-)$1	1	75	83	15.2500
))))...(	chr9:134019506-134019750(+)$1	1	28	36	15.5178
))(((...	chr3:12626343-12626629(-)$1	1	135	143	16.7678
(((((...	chr19:47725026-47725330(-)$1	1	141	149	15.3392
.(((....	chr1:70693932-70694184(+)$1	1	33	41	19.8928
((((((..	chr12:121783728-121784000(-)$1	1	205	213	16.7678
((.(((((	chr12:56194273-56194541(-)$1	1	43	51	15.7857
........	chr2:152324831-152325105(+)$1	1	142	150	15.3392
...(((((	chr4:83816915-83817164(-)$1	1	23	31	15.6964
))))..))	chr6:99848078-99848301(-)$1	1	77	85	15.7857
........	chr19:5587912-5588152(-)$1	1	146	154	19.8928
((((((((	chr10:70525493-70525744(+)$1	1	48	56	15.5178
(((.....	chr7:12420209-12420510(-)$1	1	41	49	15.5178
.)))))))	chr2:97850922-97851185(+)$1	1	119	127	15.5178
(.......	chr1:43308038-43308309(+)$1	1	69	77	15.6071
........	chr10:32101617-32101886(-)$1	1	93	101	15.7857
((((((((	chr1:22074606-22074858(-)$1	1	57	65	15.6964
))))))).	chr9:131028060-131028305(-)$1	1	100	108	16.7678

#PSSM
U : 0.82	u : 0.07	C : 0.05	A : 0.03	G : 0.01	
U : 0.89	u : 0.05	C : 0.03	g : 0.01	
U : 0.83	u : 0.07	C : 0.03	G : 0.03	A : 0.01	
C : 0.83	c : 0.03	G : 0.03	A : 0.03	U : 0.01	u : 0.01	a : 0.01	
U : 0.87	u : 0.07	C : 0.03	A : 0.01	
U : 0.83	u : 0.07	C : 0.05	A : 0.01	G : 0.01	
U : 0.87	u : 0.07	C : 0.03	A : 0.01	
U : 0.67	C : 0.12	G : 0.08	u : 0.07	A : 0.03	

#score	928.8214285714286
#seq	56
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_transcript_m1_run1.nuc.txt

#NT
gaagaacaagaac	chr15:50773927-50774200(+)$1	273	20	33	21.4137
GAGGUAGAAGAAG	chr2:232327865-232328113(-)$1	248	134	147	23.7413
gaagcacaagaag	chr1:24997940-24998187(+)$1	247	4	17	23.9137
gauggagaagaag	chr8:124382080-124382361(-)$1	281	222	235	26.0689
GGAGCAGAAGAAG	chr14:105683943-105684235(-)$1	292	169	182	22.9655
GAAGAAGAUGAAG	chr6:4042631-4042899(+)$1	268	111	124	25.2068
gaagaagaggaug	chr2:232325279-232325481(-)$1	202	2	15	21.4137
GAAGGAAAAGUAG	chr17:48820972-48821220(+)$1	248	112	125	21.5862
GAUGAUGAAGAAG	chr5:98236454-98236852(-)$1	398	136	149	22.1034
aauggagaagaag	chr21:38456381-38456736(+)$1	355	122	135	22.2758
gaagcagaagaaa	chr11:65267221-65267430(+)$1	209	26	39	23.3965
GAAAGAGAAGGAG	chr16:89348884-89349134(-)$1	250	216	229	21.0689
GAAGAAAAAGAAG	chr5:149777817-149778116(+)$1	299	178	191	25.8965
gaugaagaagaag	chr1:150207982-150208193(-)$1	211	64	77	25.7241
GAAGGACAAGAAG	chr6:30545083-30545332(+)$1	249	124	137	26.1551
gaaggagaagaug	chr9:100773551-100773767(+)$1	216	0	13	25.8103
GAAGGAGAAGAAG	chr5:149776165-149776504(+)$1	339	214	227	29.6896
Aaagaaaaagaag	chr1:24997777-24998024(+)$1	247	122	135	22.1034
GAAAGAGAUGAAG	chr12:95869841-95870055(+)$1	214	91	104	21.5862
gaaggggaagaag	chr2:61454171-61454454(-)$1	283	128	141	26.2413
gcaggagaggaag	chr14:39649876-39650230(+)$1	354	36	49	21.1551
GAAAGCGAAGAAG	chr6:26056030-26056256(-)$1	226	67	80	21.9310
GAAGGAGAAGAAG	chr16:89349825-89350099(-)$1	274	173	186	29.6896
gaaggaaaagaag	chrX:65220216-65220502(+)$1	286	107	120	26.2413
GAAGGAAAAGAAA	chr14:56079093-56079386(+)$1	293	20	33	22.1896
GAAGAGGAAGAAA	chr7:127975886-127976157(-)$1	271	132	145	21.8448
gaggaagaagaag	chr4:174253181-174253404(-)$1	223	123	136	25.8103
GCUGAAGAAGAAG	chr17:28506119-28506416(+)$1	297	153	166	21.2413
gaagaagaaaaag	chr14:102551164-102551383(-)$1	219	108	121	24.5172
gaggaagaagaag	chr4:174253150-174253353(-)$1	203	72	85	25.8103
CAAGAAGAAGAAG	chr19:1206992-1207254(+)$1	262	159	172	25.2068
GGAGGAGAAGAAG	chr6:44219805-44220030(+)$1	225	108	121	25.2068
AAAGGAGAAGAAA	chr7:99000928-99001237(-)$1	309	159	172	21.8448
GAAGAGGAAGCAG	chr6:76599774-76600083(+)$1	309	98	111	21.2413
gaaagauaagaag	chr2:99980096-99980358(+)$1	262	36	49	21.8448
gaaggagaagaug	chr9:100777555-100777772(+)$1	217	140	153	25.8103
GAAGAACAAGAAG	chr3:56647527-56647867(+)$1	340	158	171	25.8103
AAAGAAGAAGAAG	chr16:2808887-2809148(+)$1	261	143	156	25.5517
gaggaugaagaag	chr14:102549324-102549540(-)$1	216	71	84	22.1896
GAAGAACAAGAAG	chr1:205689527-205689798(-)$1	271	130	143	25.8103
GAGAGAAAAGAAG	chr7:104741772-104742096(+)$1	324	157	170	18.7413
GAGGGAGAAGAGG	chr1:150198906-150199150(-)$1	244	160	173	22.1034
GAAAGAGAAGAUG	chr15:40488738-40488990(+)$1	252	124	137	21.8448
gaagaugaagaag	chr2:232325463-232325673(-)$1	210	188	201	25.7241
GAAGGCGAAGAAG	chr6:26156906-26157186(+)$1	280	179	192	25.8965
gaaggagaagaag	chr9:136905058-136905426(-)$1	368	115	128	29.6896
gaagaagaagaag	chr12:104332045-104332289(+)$1	244	156	169	29.3448
gaagaggaagaag	chr17:3721656-3721965(-)$1	309	161	174	25.8965
AAAGAAGAAGAAG	chr12:95867841-95868109(+)$1	268	233	246	25.5517
GAAGAAGAGGAAG	chr11:65830888-65831108(+)$1	220	54	67	25.2931
GAAGGAGGAGAAA	chrX:64737889-64738194(-)$1	305	104	117	20.8103
gaaggugaagaug	chr11:10795469-10795819(+)$1	350	197	210	22.1896
gaaggggaggaag	chr11:129992098-129992363(+)$1	265	174	187	22.1896
AAAGAAGAAGAAG	chr7:148514860-148515090(-)$1	230	79	92	25.5517
gaaggagaagagg	chr22:41650230-41650574(-)$1	344	104	117	25.6379
caaggagaagaag	chr19:2114018-2114274(-)$1	256	120	133	25.5517
GAAGGAGAUGAGG	chr1:90492829-90493189(+)$1	360	131	144	21.4999

#otherMatches

#Struct PSSM
cc:::::::::::	chr6:30671294-30671529(-)$1	235	90	103	25.8965
:::::::::::::	chr15:50773927-50774200(+)$1	273	20	33	21.4137
ffff]bb::::::	chr2:232327865-232328113(-)$1	248	134	147	23.7413
:::bbpppppppb	chr1:24997940-24998187(+)$1	247	4	17	23.9137
DD}EEEEE}EEEE	chr8:124382080-124382361(-)$1	281	222	235	26.0689
hhhhhh%%%%%%e	chr14:105683943-105684235(-)$1	292	169	182	22.9655
dggggggg333cc	chr6:4042631-4042899(+)$1	268	111	124	25.2068
:::::::ffffff	chr2:232325279-232325481(-)$1	202	2	15	21.4137
c!!bbwwwwwwww	chr17:48820972-48821220(+)$1	248	112	125	21.5862
ee[ccc&&&&&&&	chr5:98236454-98236852(-)$1	398	136	149	22.1034
yyyyyyyyyyyyy	chr21:38456381-38456736(+)$1	355	122	135	22.2758
d::::::::::::	chr11:65267221-65267430(+)$1	209	26	39	23.3965
GGGGGGGYYFFFF	chr16:89348884-89349134(-)$1	250	216	229	21.0689
a22bb333dddd6	chr5:149777817-149778116(+)$1	299	178	191	25.8965
mccc:::::::::	chr1:150207982-150208193(-)$1	211	64	77	25.7241
c22eeeee:::::	chr6:30545083-30545332(+)$1	249	124	137	26.1551
:::::::::::::	chr9:100773551-100773767(+)$1	216	0	13	25.8103
:::ggggggg%%%	chr5:149776165-149776504(+)$1	339	214	227	29.6896
^^^^^^^^^^^^^	chr1:24997777-24998024(+)$1	247	122	135	22.1034
::::::::::::c	chr12:95869841-95870055(+)$1	214	91	104	21.5862
PEEEEE{A:::::	chr2:61454171-61454454(-)$1	283	128	141	26.2413
:::::::::::::	chr14:39649876-39650230(+)$1	354	36	49	21.1551
zzzdddd:::::c	chr6:26056030-26056256(-)$1	226	67	80	21.9310
a22bb:::::::B	chr16:89349825-89350099(-)$1	274	173	186	29.6896
:::::::::::::	chrX:65220216-65220502(+)$1	286	107	120	26.2413
::cccwwwwwwww	chr14:56079093-56079386(+)$1	293	20	33	22.1896
@@@@@@@@@@III	chr7:127975886-127976157(-)$1	271	132	145	21.8448
:::::::::::::	chr4:174253181-174253404(-)$1	223	123	136	25.8103
:bbqqqqqqqqbb	chr17:28506119-28506416(+)$1	297	153	166	21.2413
ccc::::::::::	chr14:102551164-102551383(-)$1	219	108	121	24.5172
:::::::::::::	chr4:174253150-174253353(-)$1	203	72	85	25.8103
:::::::::::::	chr19:1206992-1207254(+)$1	262	159	172	25.2068
^^^^^^^^^^^^^	chr6:44219805-44220030(+)$1	225	108	121	25.2068
fffa]dddd]hhh	chr7:99000928-99001237(-)$1	309	159	172	21.8448
^^^^^^^^^^^^^	chr6:76599774-76600083(+)$1	309	98	111	21.2413
:::::::::::::	chr2:99980096-99980358(+)$1	262	36	49	21.8448
::::::::::ddd	chr9:100777555-100777772(+)$1	217	140	153	25.8103
dddd!!aqqqqqq	chr3:56647527-56647867(+)$1	340	158	171	25.8103
G:===========	chr16:2808887-2809148(+)$1	261	143	156	25.5517
e::ccc$$$$$dd	chr14:102549324-102549540(-)$1	216	71	84	22.1896
DDDffffff!!dd	chr1:205689527-205689798(-)$1	271	130	143	25.8103
^^^^^^^^^^^^^	chr7:104741772-104742096(+)$1	324	157	170	18.7413
ffffyyyyyyyyy	chr1:150198906-150199150(-)$1	244	160	173	22.1034
yyyyyyyyeeeee	chr15:40488738-40488990(+)$1	252	124	137	21.8448
:::::::::::::	chr2:232325463-232325673(-)$1	210	188	201	25.7241
:::cccooooooc	chr6:26156906-26157186(+)$1	280	179	192	25.8965
ddccc::::::::	chr9:136905058-136905426(-)$1	368	115	128	29.6896
cc[bb++++++++	chr12:104332045-104332289(+)$1	244	156	169	29.3448
]a22dddd22bb]	chr17:3721656-3721965(-)$1	309	161	174	25.8965
::::::::eeeee	chr12:95867841-95868109(+)$1	268	233	246	25.5517
ppppppeeeee:F	chr11:65830888-65831108(+)$1	220	54	67	25.2931
::::::EEEEEKK	chrX:64737889-64738194(-)$1	305	104	117	20.8103
~FFFFFF}CCCYY	chr11:10795469-10795819(+)$1	350	197	210	22.1896
JJJJJJJJJJ::b	chr11:129992098-129992363(+)$1	265	174	187	22.1896
+++++++++++++	chr7:148514860-148515090(-)$1	230	79	92	25.5517
b22dddd]ccc>>	chr22:41650230-41650574(-)$1	344	104	117	25.6379
:::dddd!!ccc"	chr19:2114018-2114274(-)$1	256	120	133	25.5517
qqqa22ccc333g	chr1:90492829-90493189(+)$1	360	131	144	21.4999

#DB
))...........	chr6:30671294-30671529(-)$1	1	90	103	25.8965
.............	chr15:50773927-50774200(+)$1	1	20	33	21.4137
)))).))......	chr2:232327865-232328113(-)$1	1	134	147	23.7413
...((.......)	chr1:24997940-24998187(+)$1	1	4	17	23.9137
)).))))).))))	chr8:124382080-124382361(-)$1	1	222	235	26.0689
((((((......(	chr14:105683943-105684235(-)$1	1	169	182	22.9655
))))))))...))	chr6:4042631-4042899(+)$1	1	111	124	25.2068
.......((((((	chr2:232325279-232325481(-)$1	1	2	15	21.4137
(..((........	chr17:48820972-48821220(+)$1	1	112	125	21.5862
((.(((.......	chr5:98236454-98236852(-)$1	1	136	149	22.1034
.............	chr21:38456381-38456736(+)$1	1	122	135	22.2758
)............	chr11:65267221-65267430(+)$1	1	26	39	23.3965
)))))))..))))	chr16:89348884-89349134(-)$1	1	216	229	21.0689
)..))...)))).	chr5:149777817-149778116(+)$1	1	178	191	25.8965
.))).........	chr1:150207982-150208193(-)$1	1	64	77	25.7241
)..))))).....	chr6:30545083-30545332(+)$1	1	124	137	26.1551
.............	chr9:100773551-100773767(+)$1	1	0	13	25.8103
...(((((((...	chr5:149776165-149776504(+)$1	1	214	227	29.6896
.............	chr1:24997777-24998024(+)$1	1	122	135	22.1034
............(	chr12:95869841-95870055(+)$1	1	91	104	21.5862
.(((((.(.....	chr2:61454171-61454454(-)$1	1	128	141	26.2413
.............	chr14:39649876-39650230(+)$1	1	36	49	21.1551
...)))).....(	chr6:26056030-26056256(-)$1	1	67	80	21.9310
)..)).......)	chr16:89349825-89350099(-)$1	1	173	186	29.6896
.............	chrX:65220216-65220502(+)$1	1	107	120	26.2413
..(((........	chr14:56079093-56079386(+)$1	1	20	33	22.1896
..........)))	chr7:127975886-127976157(-)$1	1	132	145	21.8448
.............	chr4:174253181-174253404(-)$1	1	123	136	25.8103
.((........))	chr17:28506119-28506416(+)$1	1	153	166	21.2413
)))..........	chr14:102551164-102551383(-)$1	1	108	121	24.5172
.............	chr4:174253150-174253353(-)$1	1	72	85	25.8103
.............	chr19:1206992-1207254(+)$1	1	159	172	25.2068
.............	chr6:44219805-44220030(+)$1	1	108	121	25.2068
)))).)))).)))	chr7:99000928-99001237(-)$1	1	159	172	21.8448
.............	chr6:76599774-76600083(+)$1	1	98	111	21.2413
.............	chr2:99980096-99980358(+)$1	1	36	49	21.8448
..........(((	chr9:100777555-100777772(+)$1	1	140	153	25.8103
((((..(......	chr3:56647527-56647867(+)$1	1	158	171	25.8103
).(((((((((((	chr16:2808887-2809148(+)$1	1	143	156	25.5517
)..(((.....((	chr14:102549324-102549540(-)$1	1	71	84	22.1896
)))((((((..((	chr1:205689527-205689798(-)$1	1	130	143	25.8103
.............	chr7:104741772-104742096(+)$1	1	157	170	18.7413
((((.........	chr1:150198906-150199150(-)$1	1	160	173	22.1034
........)))))	chr15:40488738-40488990(+)$1	1	124	137	21.8448
.............	chr2:232325463-232325673(-)$1	1	188	201	25.7241
...(((......)	chr6:26156906-26157186(+)$1	1	179	192	25.8965
)))))........	chr9:136905058-136905426(-)$1	1	115	128	29.6896
((.((........	chr12:104332045-104332289(+)$1	1	156	169	29.3448
.)..))))..)).	chr17:3721656-3721965(-)$1	1	161	174	25.8965
........(((((	chr12:95867841-95868109(+)$1	1	233	246	25.5517
......))))).(	chr11:65830888-65831108(+)$1	1	54	67	25.2931
......(((((..	chrX:64737889-64738194(-)$1	1	104	117	20.8103
.)))))).)))..	chr11:10795469-10795819(+)$1	1	197	210	22.1896
))))))))))..(	chr11:129992098-129992363(+)$1	1	174	187	22.1896
.............	chr7:148514860-148515090(-)$1	1	79	92	25.5517
)..)))).)))..	chr22:41650230-41650574(-)$1	1	104	117	25.6379
...((((..(((.	chr19:2114018-2114274(-)$1	1	120	133	25.5517
...)..)))...)	chr1:90492829-90493189(+)$1	1	131	144	21.4999

#PSSM
G : 0.46	g : 0.39	A : 0.08	a : 0.01	C : 0.01	c : 0.01	
A : 0.49	a : 0.43	G : 0.03	c : 0.01	C : 0.01	
A : 0.46	a : 0.34	G : 0.05	u : 0.05	g : 0.05	U : 0.03	
G : 0.46	g : 0.43	A : 0.08	a : 0.01	
G : 0.27	A : 0.24	g : 0.22	a : 0.18	c : 0.03	U : 0.01	C : 0.01	
A : 0.44	a : 0.34	G : 0.05	g : 0.05	u : 0.05	C : 0.03	U : 0.01	
G : 0.43	g : 0.36	A : 0.06	C : 0.05	c : 0.03	a : 0.03	u : 0.01	
A : 0.53	a : 0.44	G : 0.01	
A : 0.48	a : 0.39	U : 0.05	g : 0.05	G : 0.01	
G : 0.55	g : 0.43	a : 0.01	
A : 0.49	a : 0.44	U : 0.01	G : 0.01	C : 0.01	
A : 0.49	a : 0.36	u : 0.06	G : 0.03	U : 0.01	g : 0.01	
G : 0.48	g : 0.41	A : 0.06	c : 0.01	a : 0.01	

#score	1398.7241379310328
#seq	58
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_transcript_m1_run1.nuc.txt

#NT
CAGGUGAG	chr19:3203741-3203956(+)$1	215	98	106	13.9074
CAGGGGUG	chr1:156713805-156714080(-)$1	275	203	211	12.0555
CAUGUGUG	chr20:10625367-10625642(-)$1	275	60	68	12.2407
CAGGUGAG	chr9:139732367-139732611(+)$1	244	97	105	13.9074
CCAGUGUG	chr19:13220740-13221017(-)$1	277	220	228	12.7037
CAGGUGGG	chr1:153913468-153913703(-)$1	235	57	65	13.4444
CCCGUGUG	chr17:63533342-63533549(-)$1	207	133	141	11.9629
cgggugug	chr17:36874125-36874379(+)$1	254	223	231	13.6296
AAGGUGUG	chr6:31746627-31746841(-)$1	214	95	103	11.0370
CCGUUGUG	chr20:44718307-44718562(-)$1	255	160	168	10.9444
CCUCUGUG	chr15:66789868-66790111(-)$1	243	199	207	7.9814
CCGGGGUG	chr19:36000939-36001212(-)$1	273	122	130	12.1481
CUGGUGAG	chr14:21462933-21463197(+)$1	264	124	132	12.7962
CCAGUGAG	chrX:133086940-133087170(-)$1	230	220	228	11.2222
CAGGUAUG	chr22:50667693-50667954(-)$1	261	119	127	10.7592
CCUGGGUG	chr6:31931998-31932252(+)$1	254	42	50	8.9999
CCUGUGUG	chr7:75614416-75614673(+)$1	257	48	56	12.3333
CAGGUGGG	chr11:721124-721358(+)$1	234	79	87	13.4444
CCGGUGGG	chr11:20409200-20409457(+)$1	257	117	125	13.5370
CAGGUGAG	chr17:80136197-80136484(-)$1	287	132	140	13.9074
CCUGUGUG	chr1:249149435-249149683(-)$1	248	125	133	12.3333
CCAGUGGG	chr19:17973699-17973980(+)$1	281	191	199	10.7592
CCAGUGUG	chr16:16208812-16209070(+)$1	258	211	219	12.7037
CUGGGGUG	chr19:5788231-5788476(-)$1	245	20	28	10.9444
ACGGUGUG	chr19:13007159-13007383(+)$1	224	23	31	11.1296
CCGGUGAG	chr20:61460210-61460466(+)$1	256	115	123	13.9999
CAGGUGAG	chr3:49714128-49714389(+)$1	261	2	10	13.9074
CGGCUGUG	chr17:80053052-80053280(-)$1	228	200	208	9.2777
CCGGGGUG	chr13:52520304-52520520(-)$1	216	36	44	12.1481
GAGGUGUG	chr3:185373885-185374192(-)$1	307	118	126	11.0370
GAGGUGUG	chr17:77078705-77078946(+)$1	241	102	110	11.0370
CUGGUGAG	chr10:71877414-71877687(-)$1	273	159	167	12.7962
CUGGGGUG	chr4:1807816-1808039(+)$1	223	96	104	10.9444
CAGGUGGG	chr3:13418792-13419053(-)$1	261	13	21	13.4444
CCAGUGGG	chr16:89962392-89962621(+)$1	229	56	64	10.7592
UAGGUGUG	chr8:22884662-22884905(-)$1	243	53	61	10.9444
CUGGUGAG	chr17:42766762-42767027(-)$1	265	107	115	12.7962
CAGGUAUG	chr1:2344870-2345162(-)$1	292	124	132	10.7592
CCACUGUG	chr8:38688530-38688837(+)$1	307	154	162	8.3518
CAGGUGGG	chr7:4823065-4823333(+)$1	268	115	123	13.4444
CAGGUGCG	chr14:35872749-35872988(-)$1	239	90	98	12.7037
CCAGUGAG	chr21:35172089-35172360(+)$1	271	156	164	11.2222
CCGGUGUG	chr4:76598217-76598536(-)$1	319	229	237	15.4814
CCAGUGUG	chr16:88691541-88691856(+)$1	315	200	208	12.7037
CUGGUGAG	chr19:50335358-50335561(+)$1	203	53	61	12.7962
CCAGUGAG	chr1:17934370-17934605(+)$1	235	4	12	11.2222
CUGGGGUG	chr12:57883241-57883472(+)$1	231	95	103	10.9444
CAGGUGGG	chr11:3392056-3392341(-)$1	285	134	142	13.4444
CAGGUGAG	chr19:8070219-8070485(-)$1	266	104	112	13.9074
CAGGUGAG	chr2:29150426-29150694(+)$1	268	5	13	13.9074
cuggagug	chr16:58589010-58589262(-)$1	252	179	187	10.3888
CCGGGGGG	chr7:77166833-77167103(+)$1	270	12	20	10.2037
CAGGUGUG	chr11:65397965-65398224(+)$1	259	120	128	15.3888

#otherMatches

#Struct PSSM
mmdddd::	chr4:1824567-1824802(-)$1	235	218	226	10.3888
eeeee:::	chr19:3203741-3203956(+)$1	215	98	106	13.9074
d[cccqqq	chr1:156713805-156714080(-)$1	275	203	211	12.0555
ffffff[b	chr20:10625367-10625642(-)$1	275	60	68	12.2407
!!eeeee!	chr9:139732367-139732611(+)$1	244	97	105	13.9074
ggggggg]	chr19:13220740-13221017(-)$1	277	220	228	12.7037
boooooob	chr1:153913468-153913703(-)$1	235	57	65	13.4444
]dddd]cc	chr17:63533342-63533549(-)$1	207	133	141	11.9629
2ddddDDD	chr17:36874125-36874379(+)$1	254	223	231	13.6296
dddd[a[d	chr6:31746627-31746841(-)$1	214	95	103	11.0370
ffrrrrrr	chr20:44718307-44718562(-)$1	255	160	168	10.9444
55555eee	chr15:66789868-66790111(-)$1	243	199	207	7.9814
EEIIIIII	chr19:36000939-36001212(-)$1	273	122	130	12.1481
:ggggggg	chr14:21462933-21463197(+)$1	264	124	132	12.7962
gggggg::	chrX:133086940-133087170(-)$1	230	220	228	11.2222
HHHHH::c	chr22:50667693-50667954(-)$1	261	119	127	10.7592
HHHHHHHM	chr6:31931998-31932252(+)$1	254	42	50	8.9999
::::BB{G	chr7:75614416-75614673(+)$1	257	48	56	12.3333
i!!ddddc	chr11:721124-721358(+)$1	234	79	87	13.4444
dddd[ddd	chr11:20409200-20409457(+)$1	257	117	125	13.5370
C}CCCZZZ	chr17:80136197-80136484(-)$1	287	132	140	13.9074
hhhhhhh]	chr1:249149435-249149683(-)$1	248	125	133	12.3333
cc:DDDDe	chr19:17973699-17973980(+)$1	281	191	199	10.7592
3eeeee]b	chr16:16208812-16209070(+)$1	258	211	219	12.7037
iiiiii[d	chr19:5788231-5788476(-)$1	245	20	28	10.9444
oodddddd	chr19:13007159-13007383(+)$1	224	23	31	11.1296
gggg[amm	chr20:61460210-61460466(+)$1	256	115	123	13.9999
::CCCKKC	chr3:49714128-49714389(+)$1	261	2	10	13.9074
beeeee[c	chr17:80053052-80053280(-)$1	228	200	208	9.2777
ccceeeee	chr13:52520304-52520520(-)$1	216	36	44	12.1481
[ammmma]	chr3:185373885-185374192(-)$1	307	118	126	11.0370
22ccc::I	chr17:77078705-77078946(+)$1	241	102	110	11.0370
oobb22bb	chr10:71877414-71877687(-)$1	273	159	167	12.7962
iiiiiccc	chr4:1807816-1808039(+)$1	223	96	104	10.9444
ffffff""	chr3:13418792-13419053(-)$1	261	13	21	13.4444
CC{EEEEE	chr16:89962392-89962621(+)$1	229	56	64	10.7592
RRRDDDD{	chr8:22884662-22884905(-)$1	243	53	61	10.9444
c[cccnnn	chr17:42766762-42767027(-)$1	265	107	115	12.7962
eeee&&&&	chr1:2344870-2345162(-)$1	292	124	132	10.7592
iiiii!!c	chr8:38688530-38688837(+)$1	307	154	162	8.3518
{HHHHHHH	chr7:4823065-4823333(+)$1	268	115	123	13.4444
ggggggll	chr14:35872749-35872988(-)$1	239	90	98	12.7037
eqqqqqqq	chr21:35172089-35172360(+)$1	271	156	164	11.2222
ddBB????	chr4:76598217-76598536(-)$1	319	229	237	15.4814
cc!!ffff	chr16:88691541-88691856(+)$1	315	200	208	12.7037
f:IIIIII	chr19:50335358-50335561(+)$1	203	53	61	12.7962
dd!!gggg	chr1:17934370-17934605(+)$1	235	4	12	11.2222
ACCCEEEE	chr12:57883241-57883472(+)$1	231	95	103	10.9444
========	chr11:3392056-3392341(-)$1	285	134	142	13.4444
fffff[ee	chr19:8070219-8070485(-)$1	266	104	112	13.9074
FFFF{DDD	chr2:29150426-29150694(+)$1	268	5	13	13.9074
fff[dddd	chr16:58589010-58589262(-)$1	252	179	187	10.3888
EEEEJJJJ	chr7:77166833-77167103(+)$1	270	12	20	10.2037
2ccceeee	chr11:65397965-65398224(+)$1	259	120	128	15.3888

#DB
..))))..	chr4:1824567-1824802(-)$1	1	218	226	10.3888
)))))...	chr19:3203741-3203956(+)$1	1	98	106	13.9074
(.(((...	chr1:156713805-156714080(-)$1	1	203	211	12.0555
((((((.(	chr20:10625367-10625642(-)$1	1	60	68	12.2407
..(((((.	chr9:139732367-139732611(+)$1	1	97	105	13.9074
))))))).	chr19:13220740-13221017(-)$1	1	220	228	12.7037
(......)	chr1:153913468-153913703(-)$1	1	57	65	13.4444
.)))).))	chr17:63533342-63533549(-)$1	1	133	141	11.9629
.)))))))	chr17:36874125-36874379(+)$1	1	223	231	13.6296
((((.(.(	chr6:31746627-31746841(-)$1	1	95	103	11.0370
((......	chr20:44718307-44718562(-)$1	1	160	168	10.9444
.....)))	chr15:66789868-66790111(-)$1	1	199	207	7.9814
((((((((	chr19:36000939-36001212(-)$1	1	122	130	12.1481
.(((((((	chr14:21462933-21463197(+)$1	1	124	132	12.7962
))))))..	chrX:133086940-133087170(-)$1	1	220	228	11.2222
(((((..(	chr22:50667693-50667954(-)$1	1	119	127	10.7592
(((((((.	chr6:31931998-31932252(+)$1	1	42	50	8.9999
....((.(	chr7:75614416-75614673(+)$1	1	48	56	12.3333
(..(((((	chr11:721124-721358(+)$1	1	79	87	13.4444
((((.(((	chr11:20409200-20409457(+)$1	1	117	125	13.5370
).)))...	chr17:80136197-80136484(-)$1	1	132	140	13.9074
))))))).	chr1:249149435-249149683(-)$1	1	125	133	12.3333
)).))))(	chr19:17973699-17973980(+)$1	1	191	199	10.7592
.))))).)	chr16:16208812-16209070(+)$1	1	211	219	12.7037
((((((.(	chr19:5788231-5788476(-)$1	1	20	28	10.9444
..))))((	chr19:13007159-13007383(+)$1	1	23	31	11.1296
((((.(..	chr20:61460210-61460466(+)$1	1	115	123	13.9999
..(((..(	chr3:49714128-49714389(+)$1	1	2	10	13.9074
((((((.(	chr17:80053052-80053280(-)$1	1	200	208	9.2777
))))))))	chr13:52520304-52520520(-)$1	1	36	44	12.1481
.(....).	chr3:185373885-185374192(-)$1	1	118	126	11.0370
..)))..(	chr17:77078705-77078946(+)$1	1	102	110	11.0370
..))..))	chr10:71877414-71877687(-)$1	1	159	167	12.7962
((((((((	chr4:1807816-1808039(+)$1	1	96	104	10.9444
((((((..	chr3:13418792-13419053(-)$1	1	13	21	13.4444
((.(((((	chr16:89962392-89962621(+)$1	1	56	64	10.7592
...((((.	chr8:22884662-22884905(-)$1	1	53	61	10.9444
(.(((...	chr17:42766762-42767027(-)$1	1	107	115	12.7962
((((....	chr1:2344870-2345162(-)$1	1	124	132	10.7592
(((((..(	chr8:38688530-38688837(+)$1	1	154	162	8.3518
.(((((((	chr7:4823065-4823333(+)$1	1	115	123	13.4444
((((((..	chr14:35872749-35872988(-)$1	1	90	98	12.7037
(.......	chr21:35172089-35172360(+)$1	1	156	164	11.2222
))))....	chr4:76598217-76598536(-)$1	1	229	237	15.4814
((..((((	chr16:88691541-88691856(+)$1	1	200	208	12.7037
).((((((	chr19:50335358-50335561(+)$1	1	53	61	12.7962
((..((((	chr1:17934370-17934605(+)$1	1	4	12	11.2222
))))((((	chr12:57883241-57883472(+)$1	1	95	103	10.9444
))))))))	chr11:3392056-3392341(-)$1	1	134	142	13.4444
(((((.((	chr19:8070219-8070485(-)$1	1	104	112	13.9074
((((.(((	chr2:29150426-29150694(+)$1	1	5	13	13.9074
(((.((((	chr16:58589010-58589262(-)$1	1	179	187	10.3888
((((((((	chr7:77166833-77167103(+)$1	1	12	20	10.2037
.)))))))	chr11:65397965-65398224(+)$1	1	120	128	15.3888

#PSSM
C : 0.87	c : 0.03	A : 0.03	G : 0.03	U : 0.01	
C : 0.40	A : 0.38	U : 0.14	g : 0.01	G : 0.01	u : 0.01	
G : 0.68	A : 0.16	U : 0.09	g : 0.03	C : 0.01	
G : 0.88	C : 0.05	g : 0.03	U : 0.01	
U : 0.79	G : 0.14	A : 0.01	u : 0.01	a : 0.01	
G : 0.92	g : 0.03	A : 0.03	
U : 0.51	A : 0.25	G : 0.16	u : 0.03	C : 0.01	
G : 0.96	g : 0.03	

#score	651.1851851851845
#seq	54
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_CDS_m3_run2.nuc.txt

#NT
GGCCG	chr17:3572312-3572611(+)$1	299	107	112	14.9999
GGCCG	chr16:11836373-11836666(-)$1	293	14	19	14.9999
GGCCG	chr21:46293315-46293592(-)$1	277	53	58	14.9999
GGCCG	chr3:38178373-38178613(-)$1	240	128	133	14.9999
GGCCG	chr10:35625887-35626144(+)$1	257	83	88	14.9999
GGCCG	chr14:68066645-68066945(-)$1	300	8	13	14.9999
ggccg	chr2:200776035-200776459(+)$1	424	11	16	14.9999
GGCCG	chr7:766248-766570(+)$1	322	132	137	14.9999
GGCCG	chr8:98656659-98656897(+)$1	238	113	118	14.9999
ggccg	chr15:65669961-65670230(-)$1	269	0	5	14.9999
GGCCG	chr1:169076048-169076253(+)$1	205	140	145	14.9999
GGCCG	chr3:141457035-141457300(+)$1	265	150	155	14.9999
GGCCG	chr14:93799067-93799375(-)$1	308	103	108	14.9999
GGCCG	chr9:136233425-136233651(-)$1	226	184	189	14.9999
GGCCG	chr2:97482551-97482782(+)$1	231	32	37	14.9999
GGCCG	chr20:25371126-25371442(-)$1	316	94	99	14.9999
ggccg	chr20:2083489-2083829(+)$1	340	123	128	14.9999
GGCCG	chr22:29168856-29169097(+)$1	241	65	70	14.9999
GGCCG	chr2:216300376-216300581(-)$1	205	91	96	14.9999
ggccg	chr9:101983811-101984112(-)$1	301	182	187	14.9999
ggccg	chr15:41785981-41786265(+)$1	284	57	62	14.9999
GGCCG	chr3:32544127-32544403(-)$1	276	79	84	14.9999
GGCCG	chr20:60941973-60942200(-)$1	227	54	59	14.9999
ggccg	chr19:18392114-18392383(-)$1	269	7	12	14.9999
GGCCG	chr3:194991626-194991880(-)$1	254	21	26	14.9999
GGCCG	chr17:73760969-73761372(-)$1	403	193	198	14.9999
GGCCG	chr8:74888335-74888618(+)$1	283	255	260	14.9999
GGCCG	chr17:1945334-1945586(+)$1	252	9	14	14.9999
GGCCG	chr17:61678276-61678563(+)$1	287	71	76	14.9999
GGCCG	chr8:74888423-74888730(+)$1	307	167	172	14.9999
GGCCG	chr2:120194559-120194817(+)$1	258	135	140	14.9999
GGCCG	chr19:33071996-33072286(+)$1	290	108	113	14.9999
GGCCG	chr2:220407998-220408217(-)$1	219	4	9	14.9999
ggccg	chr7:97910975-97911215(+)$1	240	83	88	14.9999
ggccg	chr22:19165992-19166214(-)$1	222	60	65	14.9999
ggccg	chr19:49458112-49458320(+)$1	208	26	31	14.9999
GGCCG	chr12:56122004-56122237(-)$1	233	4	9	14.9999
GGCCG	chr17:39684165-39684457(-)$1	292	34	39	14.9999
GGCCG	chr12:113796314-113796594(+)$1	280	185	190	14.9999
ggccg	chr20:30795601-30795881(+)$1	280	29	34	14.9999
GGCCG	chr4:141294692-141294971(+)$1	279	141	146	14.9999
ggccg	chr20:62371078-62371391(+)$1	313	42	47	14.9999
GGCCG	chr2:103353079-103353427(-)$1	348	145	150	14.9999
GGCCG	chr3:52312274-52312609(-)$1	335	106	111	14.9999
ggccg	chr6:1312817-1313124(+)$1	307	274	279	14.9999
GGCCG	chr6:146864889-146865186(+)$1	297	9	14	14.9999
ggccG	chr17:53498952-53499235(-)$1	283	54	59	14.9999
GGCCG	chr17:40761018-40761322(-)$1	304	40	45	14.9999
GGCCG	chr9:139948281-139948530(-)$1	249	83	88	14.9999
GGCCG	chr7:5433975-5434250(-)$1	275	160	165	14.9999
GGCCG	chr5:176778449-176778738(-)$1	289	18	23	14.9999
GGCCG	chr17:41622871-41623124(-)$1	253	112	117	14.9999
GGCCG	chr9:33167003-33167278(-)$1	275	191	196	14.9999
GGCCG	chr1:6295815-6296077(-)$1	262	13	18	14.9999
GGCCG	chr15:67813404-67813714(+)$1	310	39	44	14.9999
GGCCG	chr2:54014144-54014464(+)$1	320	83	88	14.9999
GGCCG	chr2:242501662-242501881(+)$1	219	200	205	14.9999
GGCCG	chr18:8609538-8609834(+)$1	296	5	10	14.9999
GGCCG	chr3:32433384-32433648(+)$1	264	5	10	14.9999
GGCCG	chr4:22517305-22517553(-)$1	248	28	33	14.9999
GGCCG	chr19:10946724-10946977(-)$1	253	118	123	14.9999
ggccg	chr7:158380189-158380428(-)$1	239	6	11	14.9999
ggccg	chr7:2883524-2883767(-)$1	243	13	18	14.9999
ggccg	chr20:43976894-43977154(-)$1	260	33	38	14.9999
GGCCG	chr15:51057563-51057781(-)$1	218	55	60	14.9999

#otherMatches

#Struct PSSM
]dddd	chr7:2883581-2883894(-)$1	313	80	85	14.9999
ccc33	chr17:3572312-3572611(+)$1	299	107	112	14.9999
:dddd	chr16:11836373-11836666(-)$1	293	14	19	14.9999
ccDDD	chr21:46293315-46293592(-)$1	277	53	58	14.9999
iiiii	chr3:38178373-38178613(-)$1	240	128	133	14.9999
!!bb[	chr10:35625887-35626144(+)$1	257	83	88	14.9999
ggg[c	chr14:68066645-68066945(-)$1	300	8	13	14.9999
eee:D	chr2:200776035-200776459(+)$1	424	11	16	14.9999
dddd[	chr7:766248-766570(+)$1	322	132	137	14.9999
ggggg	chr8:98656659-98656897(+)$1	238	113	118	14.9999
fffff	chr15:65669961-65670230(-)$1	269	0	5	14.9999
EEE}C	chr1:169076048-169076253(+)$1	205	140	145	14.9999
ggggg	chr3:141457035-141457300(+)$1	265	150	155	14.9999
"hhhh	chr14:93799067-93799375(-)$1	308	103	108	14.9999
EEEE~	chr9:136233425-136233651(-)$1	226	184	189	14.9999
Jdddd	chr2:97482551-97482782(+)$1	231	32	37	14.9999
iiiii	chr20:25371126-25371442(-)$1	316	94	99	14.9999
:dddd	chr20:2083489-2083829(+)$1	340	123	128	14.9999
D{BBA	chr22:29168856-29169097(+)$1	241	65	70	14.9999
DDD{A	chr2:216300376-216300581(-)$1	205	91	96	14.9999
HHHHH	chr9:101983811-101984112(-)$1	301	182	187	14.9999
FFFFK	chr15:41785981-41786265(+)$1	284	57	62	14.9999
dddd2	chr3:32544127-32544403(-)$1	276	79	84	14.9999
dccc:	chr20:60941973-60942200(-)$1	227	54	59	14.9999
nccc:	chr19:18392114-18392383(-)$1	269	7	12	14.9999
dddd]	chr3:194991626-194991880(-)$1	254	21	26	14.9999
[dddd	chr17:73760969-73761372(-)$1	403	193	198	14.9999
ffbb]	chr8:74888335-74888618(+)$1	283	255	260	14.9999
DD::f	chr17:1945334-1945586(+)$1	252	9	14	14.9999
]ccc]	chr17:61678276-61678563(+)$1	287	71	76	14.9999
ffbb:	chr8:74888423-74888730(+)$1	307	167	172	14.9999
nnccc	chr2:120194559-120194817(+)$1	258	135	140	14.9999
bb[cc	chr19:33071996-33072286(+)$1	290	108	113	14.9999
EEEE{	chr2:220407998-220408217(-)$1	219	4	9	14.9999
eee::	chr7:97910975-97911215(+)$1	240	83	88	14.9999
ee(((	chr22:19165992-19166214(-)$1	222	60	65	14.9999
[bb!!	chr19:49458112-49458320(+)$1	208	26	31	14.9999
dddd[	chr12:56122004-56122237(-)$1	233	4	9	14.9999
fffbb	chr17:39684165-39684457(-)$1	292	34	39	14.9999
eennn	chr12:113796314-113796594(+)$1	280	185	190	14.9999
GGG{I	chr20:30795601-30795881(+)$1	280	29	34	14.9999
c]bbG	chr4:141294692-141294971(+)$1	279	141	146	14.9999
JJKKD	chr20:62371078-62371391(+)$1	313	42	47	14.9999
bnnnn	chr2:103353079-103353427(-)$1	348	145	150	14.9999
eeeee	chr3:52312274-52312609(-)$1	335	106	111	14.9999
fffff	chr6:1312817-1313124(+)$1	307	274	279	14.9999
{BB{B	chr6:146864889-146865186(+)$1	297	9	14	14.9999
eeeee	chr17:53498952-53499235(-)$1	283	54	59	14.9999
===="	chr17:40761018-40761322(-)$1	304	40	45	14.9999
bb]dd	chr9:139948281-139948530(-)$1	249	83	88	14.9999
eelll	chr7:5433975-5434250(-)$1	275	160	165	14.9999
=[ddd	chr5:176778449-176778738(-)$1	289	18	23	14.9999
ffffm	chr17:41622871-41623124(-)$1	253	112	117	14.9999
dd555	chr9:33167003-33167278(-)$1	275	191	196	14.9999
IIIII	chr1:6295815-6296077(-)$1	262	13	18	14.9999
DDD{B	chr15:67813404-67813714(+)$1	310	39	44	14.9999
JJJJJ	chr2:54014144-54014464(+)$1	320	83	88	14.9999
GGGG}	chr2:242501662-242501881(+)$1	219	200	205	14.9999
D{HHH	chr18:8609538-8609834(+)$1	296	5	10	14.9999
fgggg	chr3:32433384-32433648(+)$1	264	5	10	14.9999
dd]cc	chr4:22517305-22517553(-)$1	248	28	33	14.9999
eeeae	chr19:10946724-10946977(-)$1	253	118	123	14.9999
FFF{I	chr7:158380189-158380428(-)$1	239	6	11	14.9999
hhhmm	chr7:2883524-2883767(-)$1	243	13	18	14.9999
b[bb[	chr20:43976894-43977154(-)$1	260	33	38	14.9999
fff]c	chr15:51057563-51057781(-)$1	218	55	60	14.9999

#DB
.))))	chr7:2883581-2883894(-)$1	1	80	85	14.9999
)))..	chr17:3572312-3572611(+)$1	1	107	112	14.9999
.((((	chr16:11836373-11836666(-)$1	1	14	19	14.9999
))(((	chr21:46293315-46293592(-)$1	1	53	58	14.9999
(((((	chr3:38178373-38178613(-)$1	1	128	133	14.9999
..((.	chr10:35625887-35626144(+)$1	1	83	88	14.9999
(((.(	chr14:68066645-68066945(-)$1	1	8	13	14.9999
))).(	chr2:200776035-200776459(+)$1	1	11	16	14.9999
((((.	chr7:766248-766570(+)$1	1	132	137	14.9999
(((((	chr8:98656659-98656897(+)$1	1	113	118	14.9999
(((((	chr15:65669961-65670230(-)$1	1	0	5	14.9999
))).)	chr1:169076048-169076253(+)$1	1	140	145	14.9999
)))))	chr3:141457035-141457300(+)$1	1	150	155	14.9999
.((((	chr14:93799067-93799375(-)$1	1	103	108	14.9999
)))).	chr9:136233425-136233651(-)$1	1	184	189	14.9999
(((((	chr2:97482551-97482782(+)$1	1	32	37	14.9999
)))))	chr20:25371126-25371442(-)$1	1	94	99	14.9999
.((((	chr20:2083489-2083829(+)$1	1	123	128	14.9999
(.(((	chr22:29168856-29169097(+)$1	1	65	70	14.9999
(((.(	chr2:216300376-216300581(-)$1	1	91	96	14.9999
(((((	chr9:101983811-101984112(-)$1	1	182	187	14.9999
((((.	chr15:41785981-41786265(+)$1	1	57	62	14.9999
)))).	chr3:32544127-32544403(-)$1	1	79	84	14.9999
)))).	chr20:60941973-60942200(-)$1	1	54	59	14.9999
.))).	chr19:18392114-18392383(-)$1	1	7	12	14.9999
)))).	chr3:194991626-194991880(-)$1	1	21	26	14.9999
.((((	chr17:73760969-73761372(-)$1	1	193	198	14.9999
)))).	chr8:74888335-74888618(+)$1	1	255	260	14.9999
((..(	chr17:1945334-1945586(+)$1	1	9	14	14.9999
.))).	chr17:61678276-61678563(+)$1	1	71	76	14.9999
)))).	chr8:74888423-74888730(+)$1	1	167	172	14.9999
..)))	chr2:120194559-120194817(+)$1	1	135	140	14.9999
((.((	chr19:33071996-33072286(+)$1	1	108	113	14.9999
((((.	chr2:220407998-220408217(-)$1	1	4	9	14.9999
)))..	chr7:97910975-97911215(+)$1	1	83	88	14.9999
((...	chr22:19165992-19166214(-)$1	1	60	65	14.9999
.((..	chr19:49458112-49458320(+)$1	1	26	31	14.9999
((((.	chr12:56122004-56122237(-)$1	1	4	9	14.9999
(((((	chr17:39684165-39684457(-)$1	1	34	39	14.9999
((...	chr12:113796314-113796594(+)$1	1	185	190	14.9999
(((.(	chr20:30795601-30795881(+)$1	1	29	34	14.9999
).)))	chr4:141294692-141294971(+)$1	1	141	146	14.9999
((..(	chr20:62371078-62371391(+)$1	1	42	47	14.9999
(....	chr2:103353079-103353427(-)$1	1	145	150	14.9999
)))))	chr3:52312274-52312609(-)$1	1	106	111	14.9999
)))))	chr6:1312817-1313124(+)$1	1	274	279	14.9999
.((.(	chr6:146864889-146865186(+)$1	1	9	14	14.9999
)))))	chr17:53498952-53499235(-)$1	1	54	59	14.9999
((((.	chr17:40761018-40761322(-)$1	1	40	45	14.9999
)).))	chr9:139948281-139948530(-)$1	1	83	88	14.9999
((...	chr7:5433975-5434250(-)$1	1	160	165	14.9999
(.(((	chr5:176778449-176778738(-)$1	1	18	23	14.9999
((((.	chr17:41622871-41623124(-)$1	1	112	117	14.9999
))...	chr9:33167003-33167278(-)$1	1	191	196	14.9999
(((((	chr1:6295815-6296077(-)$1	1	13	18	14.9999
(((.(	chr15:67813404-67813714(+)$1	1	39	44	14.9999
(((((	chr2:54014144-54014464(+)$1	1	83	88	14.9999
)))).	chr2:242501662-242501881(+)$1	1	200	205	14.9999
(.(((	chr18:8609538-8609834(+)$1	1	5	10	14.9999
(((((	chr3:32433384-32433648(+)$1	1	5	10	14.9999
)).))	chr4:22517305-22517553(-)$1	1	28	33	14.9999
)))))	chr19:10946724-10946977(-)$1	1	118	123	14.9999
(((.(	chr7:158380189-158380428(-)$1	1	6	11	14.9999
(((..	chr7:2883524-2883767(-)$1	1	13	18	14.9999
(.((.	chr20:43976894-43977154(-)$1	1	33	38	14.9999
))).)	chr15:51057563-51057781(-)$1	1	55	60	14.9999

#PSSM
G : 0.74	g : 0.25	
G : 0.74	g : 0.25	
C : 0.74	c : 0.25	
C : 0.74	c : 0.25	
G : 0.75	g : 0.24	

#score	989.9999999999999
#seq	66
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_transcript_m1_run1.nuc.txt

#NT
CCCUGC	chr1:1354837-1355112(-)$1	275	159	165	17.9999
CCCUGC	chr11:64662793-64663075(-)$1	282	216	222	17.9999
CCCUGC	chr19:39214651-39214898(+)$1	247	179	185	17.9999
CCCUGC	chr16:22320570-22320834(+)$1	264	54	60	17.9999
CCCUGC	chr22:51015371-51015624(-)$1	253	133	139	17.9999
CCCUGC	chr3:133474942-133475217(+)$1	275	145	151	17.9999
CCCUGC	chr1:160062386-160062633(-)$1	247	111	117	17.9999
CCCUGC	chr1:1247641-1247912(-)$1	271	151	157	17.9999
CCCUGC	chr1:45110211-45110493(+)$1	282	143	149	17.9999
CCCUGC	chr17:73221974-73222236(+)$1	262	108	114	17.9999
CCCUGC	chr19:54971746-54972005(+)$1	259	148	154	17.9999
CCCUGC	chr19:18537965-18538217(+)$1	252	74	80	17.9999
CCCUGC	chr14:105920362-105920615(+)$1	253	210	216	17.9999
CCCUGC	chr6:43471206-43471459(+)$1	253	99	105	17.9999
CCCUGC	chr7:5417358-5417604(-)$1	246	206	212	17.9999
CCCUGC	chr8:141566289-141566576(-)$1	287	126	132	17.9999
CCCUGC	chr17:78854038-78854308(+)$1	270	85	91	17.9999
CCCUGC	chr16:87873337-87873588(-)$1	251	183	189	17.9999
CCCUGC	chr19:56614531-56614775(-)$1	244	109	115	17.9999
CCCUGC	chr20:61591614-61591848(+)$1	234	96	102	17.9999
CCCUGC	chr17:80054223-80054483(-)$1	260	147	153	17.9999
CCCUGC	chr21:46913259-46913511(+)$1	252	8	14	17.9999
CCCUGC	chr16:4659944-4660222(-)$1	278	258	264	17.9999
CCCUGC	chr22:50904824-50905062(-)$1	238	8	14	17.9999
CCCUGC	chr17:1648124-1648379(+)$1	255	150	156	17.9999
CCCUGC	chr12:6646102-6646364(+)$1	262	114	120	17.9999
CCCUGC	chr1:16464841-16465088(-)$1	247	204	210	17.9999
CCCUGC	chr17:80918950-80919219(-)$1	269	154	160	17.9999
CCCUGC	chr10:99512642-99512907(+)$1	265	195	201	17.9999
CCCUGC	chr20:44985176-44985457(-)$1	281	261	267	17.9999
CCCUGC	chr16:85667360-85667608(+)$1	248	53	59	17.9999
CCCUGC	chr1:227164955-227165197(+)$1	242	153	159	17.9999
CCCUGC	chr17:1669986-1670235(+)$1	249	108	114	17.9999
CCCUGC	chr9:124543593-124543840(+)$1	247	54	60	17.9999
CCCUGC	chr1:205496647-205496913(+)$1	266	82	88	17.9999
CCCUGC	chr6:43008386-43008652(-)$1	266	241	247	17.9999
CCCUGC	chr5:1078064-1078326(-)$1	262	215	221	17.9999

#otherMatches

#Struct PSSM
D::GGG	chr1:247464476-247464738(-)$1	262	8	14	17.9999
D}JJJJ	chr1:1354837-1355112(-)$1	275	159	165	17.9999
:HHHHH	chr11:64662793-64663075(-)$1	282	216	222	17.9999
qqqqqq	chr19:39214651-39214898(+)$1	247	179	185	17.9999
cc::ff	chr16:22320570-22320834(+)$1	264	54	60	17.9999
"bbccc	chr22:51015371-51015624(-)$1	253	133	139	17.9999
elllee	chr3:133474942-133475217(+)$1	275	145	151	17.9999
c]dddd	chr1:160062386-160062633(-)$1	247	111	117	17.9999
ddbb]c	chr1:1247641-1247912(-)$1	271	151	157	17.9999
&&bbhh	chr1:45110211-45110493(+)$1	282	143	149	17.9999
mmmccc	chr17:73221974-73222236(+)$1	262	108	114	17.9999
EEEA}A	chr19:54971746-54972005(+)$1	259	148	154	17.9999
DDDDLL	chr19:18537965-18538217(+)$1	252	74	80	17.9999
__GGGG	chr14:105920362-105920615(+)$1	253	210	216	17.9999
====[d	chr6:43471206-43471459(+)$1	253	99	105	17.9999
EEE}CC	chr7:5417358-5417604(-)$1	246	206	212	17.9999
+++ddd	chr8:141566289-141566576(-)$1	287	126	132	17.9999
tttttt	chr17:78854038-78854308(+)$1	270	85	91	17.9999
ccceee	chr16:87873337-87873588(-)$1	251	183	189	17.9999
pfffff	chr19:56614531-56614775(-)$1	244	109	115	17.9999
ccccc:	chr20:61591614-61591848(+)$1	234	96	102	17.9999
eeeee3	chr17:80054223-80054483(-)$1	260	147	153	17.9999
cccGGG	chr21:46913259-46913511(+)$1	252	8	14	17.9999
@@@@@@	chr16:4659944-4660222(-)$1	278	258	264	17.9999
dttttt	chr22:50904824-50905062(-)$1	238	8	14	17.9999
ddd:dd	chr17:1648124-1648379(+)$1	255	150	156	17.9999
:eeeee	chr12:6646102-6646364(+)$1	262	114	120	17.9999
HHHHHH	chr1:16464841-16465088(-)$1	247	204	210	17.9999
dddmmm	chr17:80918950-80919219(-)$1	269	154	160	17.9999
DDDYYD	chr10:99512642-99512907(+)$1	265	195	201	17.9999
blllbb	chr20:44985176-44985457(-)$1	281	261	267	17.9999
mmmmbb	chr16:85667360-85667608(+)$1	248	53	59	17.9999
EEEccc	chr1:227164955-227165197(+)$1	242	153	159	17.9999
dddddd	chr17:1669986-1670235(+)$1	249	108	114	17.9999
dddccc	chr9:124543593-124543840(+)$1	247	54	60	17.9999
mmmccc	chr1:205496647-205496913(+)$1	266	82	88	17.9999
gggDDD	chr6:43008386-43008652(-)$1	266	241	247	17.9999
EEEDDD	chr5:1078064-1078326(-)$1	262	215	221	17.9999

#DB
(..(((	chr1:247464476-247464738(-)$1	1	8	14	17.9999
).))))	chr1:1354837-1355112(-)$1	1	159	165	17.9999
.(((((	chr11:64662793-64663075(-)$1	1	216	222	17.9999
......	chr19:39214651-39214898(+)$1	1	179	185	17.9999
))..((	chr16:22320570-22320834(+)$1	1	54	60	17.9999
.(((((	chr22:51015371-51015624(-)$1	1	133	139	17.9999
(...))	chr3:133474942-133475217(+)$1	1	145	151	17.9999
).))))	chr1:160062386-160062633(-)$1	1	111	117	17.9999
)))).)	chr1:1247641-1247912(-)$1	1	151	157	17.9999
..((((	chr1:45110211-45110493(+)$1	1	143	149	17.9999
...)))	chr17:73221974-73222236(+)$1	1	108	114	17.9999
)))).)	chr19:54971746-54972005(+)$1	1	148	154	17.9999
((((..	chr19:18537965-18538217(+)$1	1	74	80	17.9999
..))))	chr14:105920362-105920615(+)$1	1	210	216	17.9999
((((.(	chr6:43471206-43471459(+)$1	1	99	105	17.9999
))).))	chr7:5417358-5417604(-)$1	1	206	212	17.9999
...(((	chr8:141566289-141566576(-)$1	1	126	132	17.9999
......	chr17:78854038-78854308(+)$1	1	85	91	17.9999
))))))	chr16:87873337-87873588(-)$1	1	183	189	17.9999
.)))))	chr19:56614531-56614775(-)$1	1	109	115	17.9999
))))).	chr20:61591614-61591848(+)$1	1	96	102	17.9999
))))).	chr17:80054223-80054483(-)$1	1	147	153	17.9999
)))(((	chr21:46913259-46913511(+)$1	1	8	14	17.9999
......	chr16:4659944-4660222(-)$1	1	258	264	17.9999
(.....	chr22:50904824-50905062(-)$1	1	8	14	17.9999
))).((	chr17:1648124-1648379(+)$1	1	150	156	17.9999
.(((((	chr12:6646102-6646364(+)$1	1	114	120	17.9999
))))))	chr1:16464841-16465088(-)$1	1	204	210	17.9999
(((...	chr17:80918950-80919219(-)$1	1	154	160	17.9999
)))..)	chr10:99512642-99512907(+)$1	1	195	201	17.9999
(...))	chr20:44985176-44985457(-)$1	1	261	267	17.9999
....))	chr16:85667360-85667608(+)$1	1	53	59	17.9999
((((((	chr1:227164955-227165197(+)$1	1	153	159	17.9999
))))))	chr17:1669986-1670235(+)$1	1	108	114	17.9999
))))))	chr9:124543593-124543840(+)$1	1	54	60	17.9999
...)))	chr1:205496647-205496913(+)$1	1	82	88	17.9999
))))))	chr6:43008386-43008652(-)$1	1	241	247	17.9999
))))))	chr5:1078064-1078326(-)$1	1	215	221	17.9999

#PSSM
C : 0.99	
C : 0.99	
C : 0.99	
U : 0.99	
G : 0.99	
C : 0.99	

#score	683.9999999999999
#seq	38
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_CDS_m3_run2.nuc.txt

#NT
UAUUCUUCCUCCGAAGAUAAGAGAAUUAGGAAAAUGAAUCACAAUUACUAAUCUGUUGGUACAUGAAAAUAAAUGUAGUCUGUACUAUUUCUUUUAGUGCCUGUAUGGAGUGGAAUGAAUGUUGCUGGUGUCUCUCUGAAGACUCUGCACCCAGAUUUAGGGACUGAUAAAGAUAAGGAACAGUGGAAAGAGGUUCACAAGCAGGUGGUUGAGAGGUAAUAAAUCUUUCAAUUUGGCAACACAGAAUAUUAACAUUUAC	chr11:18425140-18425430(+)$1	290	3	262	160.3333
UAACUGGCUAGACCUCGUAUUUUUCACUACAGAAGCCUAUAAUCUAAAGUUGCCAGGAUUUAAACACAUUACUUUUAGGUUAUUGUCUACAUUUAUCCUGAGACCUCUUCUCUUCUUAUUCCAAAAUGUUGAGAUACUGGGGAGAGAUACCAAUAUCAUCAAGCCAGACCAACAGAAGUUCCUUCGAUUUGCUCCCACGGGAGUUCCGUCUGGUGGAAGUCCAUGACCCACCCCUGCACCAACCCUCAGCCAACAAGCC	chr2:27884128-27884388(-)$1	260	0	259	163.6666

#otherMatches

#Struct PSSM
::::::::::eeeeeddddccc[ffffff[dddd[bbmmmmbb]dddd333ffffff22ccc]dddd]eeeee:::::::::DDDDKKHHHHHHHH{A:bb[eeeee"""ffffff$$$$$dddd!!ddddmmmmddddddddffffffeeeee]bb==========$$$$$cccqqqqqqqqccc==========::ffffff"""dddd[cccrrrrrrrrrccc]dddd333ffffff:::A}HHHHHHHHYYDDD	chr2:62096528-62096788(-)$1	260	0	259	160.3333
:::eeeeemmmmeeeee:::::bb[cccooooooccc]bbFFFFFFKKFFFFFF{DDDDLLLIIIIIIIIIEEEEEKKEEEEEddddpppppppddddffffff[dddd[a''''''''dddd[bb!!ddddhhhhhhhh"""ddddmmmmddddhhhhhhhh22dddd666666bb]dddd999999999a]dddd333ffffff===========nnnnn===========:::::::EEEEE______EEEEEZZZ	chr11:18425140-18425430(+)$1	290	3	262	160.3333
::::EEEEEBB::bb[cccqqqqqqqqcccbb:bb[a[==========bb$$$$$aqqqqqqqqa55555bb]==========]a]bb:::::::::::ddddnnnnndddd::::::::::::::eeeee[a"""dddd"""bbddddmmmmdddd]bb333dddd]aeeeeeddddlllddddccc!!eeeeemmmmeeeee333ccc:eeeee!!ccclllccceeeee::::::::::::BB}EEEEE:::::::	chr2:27884128-27884388(-)$1	260	0	259	163.6666

#DB
..........((((((((((((.((((((.((((.((....)).))))...))))))..))).)))).))))).........((((..((((((((.(.((.(((((...((((((.....((((..((((....))))))))))))))))))).))((((((((((.....(((........)))))))))))))..((((((...((((.(((.........))).))))...))))))...).))))))))..)))	chr2:62096528-62096788(-)$1	1	0	259	160.3333
...(((((....))))).....((.(((......))).))((((((..((((((.((((...((((((((((((((..(((((((((.......))))((((((.((((.(........((((.((..((((((((((((...((((....))))))))))))..))))......)).)))).........).))))...))))))(((((((((((.....))))))))))).......)))))......)))))...	chr11:18425140-18425430(+)$1	1	3	262	160.3333
....(((((((..((.(((........))))).((.(.((((((((((((.....(........).....)).)))))))))).).))...........((((.....))))..............(((((.(...((((...((((((....)))).))...)))).))))))((((...))))(((..(((((....)))))...))).(((((..(((...))))))))............)).))))).......	chr2:27884128-27884388(-)$1	1	0	259	163.6666

#PSSM
U : 0.66	G : 0.33	
A : 1.00	
A : 0.66	U : 0.33	
A : 0.33	U : 0.33	C : 0.33	
A : 0.33	C : 0.33	U : 0.33	
C : 0.33	U : 0.33	G : 0.33	
U : 0.66	G : 0.33	
C : 0.66	A : 0.33	
G : 0.33	C : 0.33	U : 0.33	
A : 0.66	U : 0.33	
U : 0.33	C : 0.33	G : 0.33	
U : 0.33	C : 0.33	A : 0.33	
U : 0.33	G : 0.33	C : 0.33	
A : 0.66	C : 0.33	
G : 0.33	A : 0.33	U : 0.33	
G : 0.66	C : 0.33	
U : 0.33	A : 0.33	G : 0.33	
U : 0.66	C : 0.33	
A : 0.66	U : 0.33	
U : 0.66	A : 0.33	
G : 0.66	U : 0.33	
A : 0.66	U : 0.33	
G : 0.66	U : 0.33	
G : 0.33	A : 0.33	U : 0.33	
U : 0.33	A : 0.33	C : 0.33	
A : 0.66	U : 0.33	
C : 0.66	U : 0.33	
A : 0.66	U : 0.33	
C : 0.33	G : 0.33	A : 0.33	
U : 0.33	G : 0.33	C : 0.33	
A : 0.66	G : 0.33	
G : 0.66	A : 0.33	
A : 0.66	U : 0.33	
A : 1.00	
A : 0.33	U : 0.33	G : 0.33	
C : 0.66	G : 0.33	
C : 0.66	A : 0.33	
A : 0.66	U : 0.33	
C : 0.33	U : 0.33	A : 0.33	
G : 0.33	C : 0.33	U : 0.33	
A : 0.66	U : 0.33	
G : 0.33	C : 0.33	A : 0.33	
G : 0.33	A : 0.33	U : 0.33	
C : 0.66	A : 0.33	
U : 1.00	
G : 0.33	U : 0.33	A : 0.33	
A : 0.66	C : 0.33	
U : 0.33	C : 0.33	A : 0.33	
G : 0.66	U : 0.33	
A : 0.66	U : 0.33	
U : 0.66	A : 0.33	
G : 0.66	U : 0.33	
C : 0.66	U : 0.33	
G : 0.33	U : 0.33	C : 0.33	
U : 0.33	G : 0.33	A : 0.33	
A : 0.33	U : 0.33	G : 0.33	
U : 0.66	G : 0.33	
U : 0.33	G : 0.33	A : 0.33	
A : 0.33	G : 0.33	U : 0.33	
U : 1.00	
C : 0.33	A : 0.33	U : 0.33	
A : 0.66	C : 0.33	
A : 0.66	C : 0.33	
A : 0.66	U : 0.33	
G : 0.66	C : 0.33	
A : 1.00	
C : 0.66	A : 0.33	
A : 1.00	
C : 0.33	A : 0.33	U : 0.33	
U : 1.00	
A : 1.00	
A : 0.66	C : 0.33	
A : 0.66	U : 0.33	
U : 0.66	A : 0.33	
G : 0.66	U : 0.33	
U : 0.66	C : 0.33	
A : 1.00	
G : 0.66	A : 0.33	
C : 0.33	U : 0.33	G : 0.33	
U : 0.66	C : 0.33	
U : 1.00	
G : 0.66	A : 0.33	
U : 1.00	
G : 0.33	A : 0.33	U : 0.33	
C : 0.66	G : 0.33	
U : 1.00	
G : 0.33	A : 0.33	C : 0.33	
U : 0.66	A : 0.33	
U : 0.66	A : 0.33	
U : 0.66	C : 0.33	
U : 0.33	C : 0.33	A : 0.33	
U : 0.66	G : 0.33	
U : 0.66	A : 0.33	
U : 1.00	
U : 0.66	A : 0.33	
U : 0.66	A : 0.33	
G : 0.66	C : 0.33	
C : 0.66	U : 0.33	
A : 0.33	G : 0.33	U : 0.33	
G : 0.66	C : 0.33	
G : 0.33	C : 0.33	A : 0.33	
G : 0.66	U : 0.33	
U : 0.33	G : 0.33	A : 0.33	
G : 0.33	U : 0.33	C : 0.33	
G : 0.33	A : 0.33	C : 0.33	
U : 1.00	
A : 0.33	G : 0.33	C : 0.33	
U : 0.66	G : 0.33	
U : 0.66	A : 0.33	
U : 0.33	G : 0.33	C : 0.33	
U : 0.66	C : 0.33	
C : 0.66	G : 0.33	
A : 0.33	G : 0.33	U : 0.33	
A : 0.66	U : 0.33	
C : 0.66	A : 0.33	
U : 0.66	A : 0.33	
U : 0.66	G : 0.33	
A : 0.66	U : 0.33	
U : 0.66	A : 0.33	
U : 1.00	
G : 0.66	C : 0.33	
G : 0.33	U : 0.33	C : 0.33	
A : 0.66	U : 0.33	
G : 0.66	A : 0.33	
G : 0.33	C : 0.33	A : 0.33	
A : 0.66	U : 0.33	
A : 0.33	G : 0.33	U : 0.33	
G : 0.66	C : 0.33	
U : 1.00	
G : 0.66	U : 0.33	
G : 0.66	U : 0.33	
U : 0.33	C : 0.33	A : 0.33	
U : 0.66	G : 0.33	
G : 0.33	C : 0.33	A : 0.33	
U : 1.00	
C : 0.66	A : 0.33	
C : 0.66	U : 0.33	
A : 0.33	G : 0.33	U : 0.33	
G : 0.66	A : 0.33	
C : 0.33	A : 0.33	G : 0.33	
G : 0.66	C : 0.33	
U : 0.33	A : 0.33	G : 0.33	
C : 0.66	A : 0.33	
U : 0.66	G : 0.33	
G : 0.33	C : 0.33	A : 0.33	
U : 0.66	G : 0.33	
U : 0.33	G : 0.33	A : 0.33	
G : 0.33	C : 0.33	U : 0.33	
A : 0.66	G : 0.33	
C : 0.66	U : 0.33	
C : 0.66	A : 0.33	
U : 0.33	C : 0.33	A : 0.33	
A : 0.66	C : 0.33	
A : 0.33	G : 0.33	U : 0.33	
A : 0.66	G : 0.33	
U : 1.00	
C : 0.66	U : 0.33	
A : 0.66	U : 0.33	
G : 0.33	A : 0.33	U : 0.33	
U : 0.33	G : 0.33	C : 0.33	
G : 0.66	A : 0.33	
C : 0.33	G : 0.33	A : 0.33	
U : 0.33	A : 0.33	G : 0.33	
C : 1.00	
U : 0.66	C : 0.33	
G : 0.66	A : 0.33	
A : 0.66	G : 0.33	
C : 0.33	U : 0.33	A : 0.33	
U : 0.33	A : 0.33	C : 0.33	
C : 0.66	A : 0.33	
A : 0.66	U : 0.33	
U : 0.33	G : 0.33	A : 0.33	
G : 0.33	A : 0.33	C : 0.33	
C : 0.33	U : 0.33	A : 0.33	
A : 0.66	G : 0.33	
A : 1.00	
C : 0.33	G : 0.33	A : 0.33	
G : 0.66	U : 0.33	
G : 0.33	A : 0.33	U : 0.33	
A : 0.66	U : 0.33	
C : 0.66	A : 0.33	
A : 0.66	C : 0.33	
C : 0.33	G : 0.33	U : 0.33	
U : 1.00	
G : 0.66	C : 0.33	
G : 0.66	U : 0.33	
A : 0.66	U : 0.33	
C : 0.33	A : 0.33	U : 0.33	
G : 0.33	A : 0.33	U : 0.33	
G : 0.66	U : 0.33	
A : 0.66	G : 0.33	
G : 0.66	C : 0.33	
C : 0.33	G : 0.33	U : 0.33	
A : 0.33	U : 0.33	C : 0.33	
U : 0.66	C : 0.33	
C : 0.66	U : 0.33	
A : 0.66	C : 0.33	
C : 0.66	U : 0.33	
G : 0.66	A : 0.33	
A : 0.66	G : 0.33	
G : 0.66	A : 0.33	
A : 0.66	C : 0.33	
A : 0.66	G : 0.33	
U : 0.66	G : 0.33	
A : 0.33	G : 0.33	U : 0.33	
G : 0.33	U : 0.33	C : 0.33	
A : 0.33	G : 0.33	C : 0.33	
G : 0.66	U : 0.33	
U : 0.66	G : 0.33	
A : 0.33	U : 0.33	C : 0.33	
U : 0.66	G : 0.33	
G : 0.66	A : 0.33	
G : 0.66	U : 0.33	
G : 0.33	A : 0.33	U : 0.33	
G : 1.00	
G : 0.66	U : 0.33	
A : 0.66	U : 0.33	
A : 1.00	
G : 0.66	A : 0.33	
U : 1.00	
G : 0.33	A : 0.33	C : 0.33	
U : 0.33	A : 0.33	C : 0.33	
A : 0.66	U : 0.33	
U : 1.00	
C : 0.66	G : 0.33	
C : 0.33	U : 0.33	A : 0.33	
A : 0.33	U : 0.33	C : 0.33	
G : 0.33	U : 0.33	C : 0.33	
C : 0.66	G : 0.33	
A : 0.66	U : 0.33	
U : 0.33	A : 0.33	C : 0.33	
G : 0.33	U : 0.33	C : 0.33	
C : 0.66	U : 0.33	
A : 0.33	U : 0.33	C : 0.33	
A : 0.33	G : 0.33	U : 0.33	
G : 0.66	A : 0.33	
C : 0.66	U : 0.33	
A : 0.66	U : 0.33	
U : 0.33	A : 0.33	C : 0.33	
C : 0.66	U : 0.33	
A : 0.66	C : 0.33	
U : 0.33	C : 0.33	A : 0.33	
U : 0.33	A : 0.33	C : 0.33	
A : 0.33	G : 0.33	C : 0.33	
G : 0.33	A : 0.33	C : 0.33	
G : 0.33	A : 0.33	U : 0.33	
A : 0.33	U : 0.33	C : 0.33	
A : 0.66	G : 0.33	
G : 0.66	U : 0.33	
U : 0.66	C : 0.33	
C : 0.66	A : 0.33	
A : 1.00	
A : 0.66	C : 0.33	
A : 0.66	C : 0.33	
A : 0.66	U : 0.33	
A : 0.66	U : 0.33	
G : 0.66	U : 0.33	
G : 0.33	A : 0.33	C : 0.33	
C : 1.00	

#score	484.3333333333333
#seq	3
#width	259
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_transcript_m2_run1.nuc.txt

#NT
CUG	chr22:21982462-21982703(-)$1	241	60	63	8.9999
CUG	chr22:35737776-35738027(+)$1	251	11	14	8.9999
CUG	chr6:26020628-26020864(+)$1	236	6	9	8.9999
cug	chr3:6616782-6617029(+)$1	247	10	13	8.9999
CUG	chr9:35056509-35056796(-)$1	287	2	5	8.9999
CUG	chr1:51820165-51820445(-)$1	280	146	149	8.9999
CUG	chr11:130013805-130014054(+)$1	249	23	26	8.9999
CUG	chrX:64961582-64961821(+)$1	239	16	19	8.9999
CUG	chr11:77327275-77327550(-)$1	275	42	45	8.9999
CUG	chr21:39431142-39431362(-)$1	220	73	76	8.9999
CUG	chr4:1238691-1238957(-)$1	266	46	49	8.9999
CUG	chr10:120900580-120900842(-)$1	262	19	22	8.9999
CUG	chr16:89629586-89629817(+)$1	231	15	18	8.9999
CUG	chr8:87570838-87571148(+)$1	310	72	75	8.9999
CUG	chr16:12897475-12897807(-)$1	332	109	112	8.9999
CUG	chr11:8707213-8707419(+)$1	206	26	29	8.9999
CUG	chr18:29691628-29691927(+)$1	299	91	94	8.9999
CUG	chr6:43752800-43753023(+)$1	223	25	28	8.9999
CUG	chr3:49397446-49397704(-)$1	258	10	13	8.9999
CUG	chr14:102547620-102547871(-)$1	251	67	70	8.9999
CUG	chr1:150532726-150533005(+)$1	279	10	13	8.9999
CUG	chr6:26033656-26033891(-)$1	235	28	31	8.9999
CUG	chr16:2821095-2821394(+)$1	299	54	57	8.9999
CUG	chr15:91463895-91464136(+)$1	241	98	101	8.9999
CUG	chr4:100869261-100869484(-)$1	223	31	34	8.9999
CUG	chr12:21788290-21788506(-)$1	216	25	28	8.9999
CUG	chr12:49521551-49521800(-)$1	249	19	22	8.9999
CUG	chr10:103550659-103550903(-)$1	244	2	5	8.9999
CUG	chr21:46856680-46857009(+)$1	329	21	24	8.9999
CUG	chr11:62291332-62291596(-)$1	264	89	92	8.9999
CUG	chr22:50035996-50036231(-)$1	235	2	5	8.9999
CUG	chr14:102547691-102547901(-)$1	210	11	14	8.9999
CUG	chr16:723943-724196(+)$1	253	22	25	8.9999
CUG	chr14:50050268-50050494(-)$1	226	2	5	8.9999
CUG	chr15:66795703-66795949(-)$1	246	97	100	8.9999
CUG	chr3:23932600-23932869(+)$1	269	42	45	8.9999
CUG	chr8:54628296-54628568(-)$1	272	28	31	8.9999
CUG	chr8:67834459-67834727(-)$1	268	13	16	8.9999
CUG	chr22:50035610-50035867(-)$1	257	3	6	8.9999
CUG	chr6:31785513-31785771(+)$1	258	8	11	8.9999
CUG	chr8:101730010-101730215(-)$1	205	41	44	8.9999
CUG	chr19:4037209-4037472(+)$1	263	17	20	8.9999
CUG	chr14:50052566-50052806(-)$1	240	10	13	8.9999
CUG	chr20:55093273-55093621(+)$1	348	10	13	8.9999
CUG	chr19:39220971-39221197(+)$1	226	6	9	8.9999
CUG	chr10:72187631-72187876(+)$1	245	2	5	8.9999
CUG	chr16:89028435-89028706(-)$1	271	16	19	8.9999
CUG	chr16:89629515-89629763(+)$1	248	6	9	8.9999
CUG	chr7:107559931-107560218(+)$1	287	11	14	8.9999
CUG	chr19:10941966-10942240(+)$1	274	42	45	8.9999
CUG	chr3:47469976-47470241(-)$1	265	37	40	8.9999
CUG	chr9:127998679-127998898(-)$1	219	31	34	8.9999
CUG	chr8:11696378-11696632(+)$1	254	17	20	8.9999
cug	chr17:80858430-80858711(+)$1	281	2	5	8.9999
CUG	chr12:120899406-120899706(-)$1	300	65	68	8.9999
CUG	chr15:44855119-44855403(-)$1	284	34	37	8.9999
CUG	chr2:232037216-232037538(+)$1	322	9	12	8.9999
CUG	chr12:133138827-133139109(+)$1	282	16	19	8.9999
cug	chr8:91269499-91269814(+)$1	315	177	180	8.9999
CUG	chr11:126132785-126133048(-)$1	263	29	32	8.9999
CUG	chr11:116649432-116649686(-)$1	254	28	31	8.9999
CUG	chr2:132273524-132273812(+)$1	288	0	3	8.9999
CUG	chr22:50036797-50037091(-)$1	294	22	25	8.9999
CUG	chr7:103112262-103112549(-)$1	287	45	48	8.9999
CUG	chr16:89020379-89020623(-)$1	244	46	49	8.9999
CUG	chr2:47387321-47387567(-)$1	246	16	19	8.9999
CUG	chr2:277306-277594(+)$1	288	12	15	8.9999
CUG	chr19:1815423-1815684(-)$1	261	57	60	8.9999
CUG	chr10:70864269-70864527(+)$1	258	153	156	8.9999
CUG	chr9:127115691-127115981(-)$1	290	25	28	8.9999
CUG	chrX:40510555-40510844(-)$1	289	52	55	8.9999
CUG	chr1:182856458-182856797(+)$1	339	28	31	8.9999
CUG	chr7:1474052-1474340(-)$1	288	13	16	8.9999
CUG	chr11:118279620-118279917(+)$1	297	5	8	8.9999
CUG	chr22:50039272-50039520(-)$1	248	30	33	8.9999
CUG	chr2:47606942-47607208(+)$1	266	4	7	8.9999
CUG	chr22:35738472-35738724(+)$1	252	6	9	8.9999
CUG	chr1:45976772-45976991(-)$1	219	15	18	8.9999
CUG	chr19:1435379-1435657(+)$1	278	14	17	8.9999
CUG	chr15:91503041-91503292(+)$1	251	57	60	8.9999
CUG	chr1:46769277-46769525(+)$1	248	9	12	8.9999
CUG	chr4:109543637-109543874(+)$1	237	40	43	8.9999
CUG	chr18:43666031-43666296(-)$1	265	32	35	8.9999
CUG	chr12:131360366-131360662(+)$1	296	11	14	8.9999
CUG	chr17:79477236-79477506(-)$1	270	18	21	8.9999
CUG	chr13:114562980-114563236(-)$1	256	6	9	8.9999
CUG	chr19:48618633-48618943(-)$1	310	15	18	8.9999
CUG	chr12:63359046-63359317(+)$1	271	230	233	8.9999
CUG	chr3:25639444-25639730(-)$1	286	12	15	8.9999
CUG	chr7:44873759-44874050(-)$1	291	68	71	8.9999
CUG	chr4:120987764-120988014(-)$1	250	11	14	8.9999
CUG	chr1:203839001-203839216(+)$1	215	35	38	8.9999
CUG	chr4:100869233-100869461(-)$1	228	8	11	8.9999
CUG	chr1:1431260-1431563(+)$1	303	5	8	8.9999
cug	chr22:35740868-35741115(+)$1	247	5	8	8.9999
CUG	chr5:6599662-6599936(-)$1	274	18	21	8.9999
CUG	chr3:183901554-183901825(+)$1	271	27	30	8.9999
CUG	chr6:158994393-158994659(+)$1	266	3	6	8.9999

#otherMatches

#Struct PSSM
iii	chr17:57771904-57772128(+)$1	224	4	7	8.9999
hhh	chr22:21982462-21982703(-)$1	241	60	63	8.9999
DD:	chr22:35737776-35738027(+)$1	251	11	14	8.9999
:::	chr6:26020628-26020864(+)$1	236	6	9	8.9999
ddd	chr3:6616782-6617029(+)$1	247	10	13	8.9999
eee	chr9:35056509-35056796(-)$1	287	2	5	8.9999
ggB	chr1:51820165-51820445(-)$1	280	146	149	8.9999
EEE	chr11:130013805-130014054(+)$1	249	23	26	8.9999
KFF	chrX:64961582-64961821(+)$1	239	16	19	8.9999
nnb	chr11:77327275-77327550(-)$1	275	42	45	8.9999
F::	chr21:39431142-39431362(-)$1	220	73	76	8.9999
CCC	chr4:1238691-1238957(-)$1	266	46	49	8.9999
DDD	chr10:120900580-120900842(-)$1	262	19	22	8.9999
eee	chr16:89629586-89629817(+)$1	231	15	18	8.9999
cc%	chr8:87570838-87571148(+)$1	310	72	75	8.9999
FFF	chr16:12897475-12897807(-)$1	332	109	112	8.9999
===	chr11:8707213-8707419(+)$1	206	26	29	8.9999
GGG	chr18:29691628-29691927(+)$1	299	91	94	8.9999
EEE	chr6:43752800-43753023(+)$1	223	25	28	8.9999
c:F	chr3:49397446-49397704(-)$1	258	10	13	8.9999
ddd	chr14:102547620-102547871(-)$1	251	67	70	8.9999
xxx	chr1:150532726-150533005(+)$1	279	10	13	8.9999
::c	chr6:26033656-26033891(-)$1	235	28	31	8.9999
eee	chr16:2821095-2821394(+)$1	299	54	57	8.9999
eee	chr15:91463895-91464136(+)$1	241	98	101	8.9999
JJJ	chr4:100869261-100869484(-)$1	223	31	34	8.9999
EEE	chr12:21788290-21788506(-)$1	216	25	28	8.9999
GGG	chr12:49521551-49521800(-)$1	249	19	22	8.9999
ddd	chr10:103550659-103550903(-)$1	244	2	5	8.9999
GGG	chr21:46856680-46857009(+)$1	329	21	24	8.9999
ddd	chr11:62291332-62291596(-)$1	264	89	92	8.9999
CC{	chr22:50035996-50036231(-)$1	235	2	5	8.9999
:::	chr14:102547691-102547901(-)$1	210	11	14	8.9999
gg[	chr16:723943-724196(+)$1	253	22	25	8.9999
:::	chr14:50050268-50050494(-)$1	226	2	5	8.9999
eee	chr15:66795703-66795949(-)$1	246	97	100	8.9999
ffo	chr3:23932600-23932869(+)$1	269	42	45	8.9999
eee	chr8:54628296-54628568(-)$1	272	28	31	8.9999
ddd	chr8:67834459-67834727(-)$1	268	13	16	8.9999
ddd	chr22:50035610-50035867(-)$1	257	3	6	8.9999
(((	chr6:31785513-31785771(+)$1	258	8	11	8.9999
ccc	chr8:101730010-101730215(-)$1	205	41	44	8.9999
mmm	chr19:4037209-4037472(+)$1	263	17	20	8.9999
BSS	chr14:50052566-50052806(-)$1	240	10	13	8.9999
A{F	chr20:55093273-55093621(+)$1	348	10	13	8.9999
ddd	chr19:39220971-39221197(+)$1	226	6	9	8.9999
[dd	chr10:72187631-72187876(+)$1	245	2	5	8.9999
eee	chr16:89028435-89028706(-)$1	271	16	19	8.9999
CCC	chr16:89629515-89629763(+)$1	248	6	9	8.9999
Cdd	chr7:107559931-107560218(+)$1	287	11	14	8.9999
iii	chr19:10941966-10942240(+)$1	274	42	45	8.9999
WWW	chr3:47469976-47470241(-)$1	265	37	40	8.9999
cc]	chr9:127998679-127998898(-)$1	219	31	34	8.9999
fpp	chr8:11696378-11696632(+)$1	254	17	20	8.9999
::F	chr17:80858430-80858711(+)$1	281	2	5	8.9999
eee	chr12:120899406-120899706(-)$1	300	65	68	8.9999
CCG	chr15:44855119-44855403(-)$1	284	34	37	8.9999
:::	chr2:232037216-232037538(+)$1	322	9	12	8.9999
F{D	chr12:133138827-133139109(+)$1	282	16	19	8.9999
HHF	chr8:91269499-91269814(+)$1	315	177	180	8.9999
KDD	chr11:126132785-126133048(-)$1	263	29	32	8.9999
eed	chr11:116649432-116649686(-)$1	254	28	31	8.9999
:DD	chr2:132273524-132273812(+)$1	288	0	3	8.9999
DDD	chr22:50036797-50037091(-)$1	294	22	25	8.9999
::e	chr7:103112262-103112549(-)$1	287	45	48	8.9999
iii	chr16:89020379-89020623(-)$1	244	46	49	8.9999
ggg	chr2:47387321-47387567(-)$1	246	16	19	8.9999
amm	chr2:277306-277594(+)$1	288	12	15	8.9999
::d	chr19:1815423-1815684(-)$1	261	57	60	8.9999
ccc	chr10:70864269-70864527(+)$1	258	153	156	8.9999
LLI	chr9:127115691-127115981(-)$1	290	25	28	8.9999
ccc	chrX:40510555-40510844(-)$1	289	52	55	8.9999
MDD	chr1:182856458-182856797(+)$1	339	28	31	8.9999
HHH	chr7:1474052-1474340(-)$1	288	13	16	8.9999
een	chr11:118279620-118279917(+)$1	297	5	8	8.9999
lll	chr22:50039272-50039520(-)$1	248	30	33	8.9999
d!!	chr2:47606942-47607208(+)$1	266	4	7	8.9999
DDD	chr22:35738472-35738724(+)$1	252	6	9	8.9999
fff	chr1:45976772-45976991(-)$1	219	15	18	8.9999
ffo	chr19:1435379-1435657(+)$1	278	14	17	8.9999
ff&	chr15:91503041-91503292(+)$1	251	57	60	8.9999
lbb	chr1:46769277-46769525(+)$1	248	9	12	8.9999
c]f	chr4:109543637-109543874(+)$1	237	40	43	8.9999
4ee	chr18:43666031-43666296(-)$1	265	32	35	8.9999
CCC	chr12:131360366-131360662(+)$1	296	11	14	8.9999
JJJ	chr17:79477236-79477506(-)$1	270	18	21	8.9999
ggg	chr13:114562980-114563236(-)$1	256	6	9	8.9999
ppp	chr19:48618633-48618943(-)$1	310	15	18	8.9999
ccc	chr12:63359046-63359317(+)$1	271	230	233	8.9999
fa[	chr3:25639444-25639730(-)$1	286	12	15	8.9999
EEE	chr7:44873759-44874050(-)$1	291	68	71	8.9999
"ii	chr4:120987764-120988014(-)$1	250	11	14	8.9999
^^^	chr1:203839001-203839216(+)$1	215	35	38	8.9999
JJJ	chr4:100869233-100869461(-)$1	228	8	11	8.9999
DDD	chr1:1431260-1431563(+)$1	303	5	8	8.9999
mmm	chr22:35740868-35741115(+)$1	247	5	8	8.9999
!!d	chr5:6599662-6599936(-)$1	274	18	21	8.9999
!!b	chr3:183901554-183901825(+)$1	271	27	30	8.9999
::D	chr6:158994393-158994659(+)$1	266	3	6	8.9999

#DB
(((	chr17:57771904-57772128(+)$1	1	4	7	8.9999
)))	chr22:21982462-21982703(-)$1	1	60	63	8.9999
((.	chr22:35737776-35738027(+)$1	1	11	14	8.9999
...	chr6:26020628-26020864(+)$1	1	6	9	8.9999
)))	chr3:6616782-6617029(+)$1	1	10	13	8.9999
(((	chr9:35056509-35056796(-)$1	1	2	5	8.9999
)))	chr1:51820165-51820445(-)$1	1	146	149	8.9999
(((	chr11:130013805-130014054(+)$1	1	23	26	8.9999
.((	chrX:64961582-64961821(+)$1	1	16	19	8.9999
..)	chr11:77327275-77327550(-)$1	1	42	45	8.9999
(..	chr21:39431142-39431362(-)$1	1	73	76	8.9999
(((	chr4:1238691-1238957(-)$1	1	46	49	8.9999
(((	chr10:120900580-120900842(-)$1	1	19	22	8.9999
(((	chr16:89629586-89629817(+)$1	1	15	18	8.9999
((.	chr8:87570838-87571148(+)$1	1	72	75	8.9999
(((	chr16:12897475-12897807(-)$1	1	109	112	8.9999
)))	chr11:8707213-8707419(+)$1	1	26	29	8.9999
(((	chr18:29691628-29691927(+)$1	1	91	94	8.9999
(((	chr6:43752800-43753023(+)$1	1	25	28	8.9999
).(	chr3:49397446-49397704(-)$1	1	10	13	8.9999
)))	chr14:102547620-102547871(-)$1	1	67	70	8.9999
...	chr1:150532726-150533005(+)$1	1	10	13	8.9999
..(	chr6:26033656-26033891(-)$1	1	28	31	8.9999
(((	chr16:2821095-2821394(+)$1	1	54	57	8.9999
)))	chr15:91463895-91464136(+)$1	1	98	101	8.9999
(((	chr4:100869261-100869484(-)$1	1	31	34	8.9999
(((	chr12:21788290-21788506(-)$1	1	25	28	8.9999
(((	chr12:49521551-49521800(-)$1	1	19	22	8.9999
(((	chr10:103550659-103550903(-)$1	1	2	5	8.9999
(((	chr21:46856680-46857009(+)$1	1	21	24	8.9999
)))	chr11:62291332-62291596(-)$1	1	89	92	8.9999
((.	chr22:50035996-50036231(-)$1	1	2	5	8.9999
...	chr14:102547691-102547901(-)$1	1	11	14	8.9999
((.	chr16:723943-724196(+)$1	1	22	25	8.9999
...	chr14:50050268-50050494(-)$1	1	2	5	8.9999
(((	chr15:66795703-66795949(-)$1	1	97	100	8.9999
((.	chr3:23932600-23932869(+)$1	1	42	45	8.9999
)))	chr8:54628296-54628568(-)$1	1	28	31	8.9999
(((	chr8:67834459-67834727(-)$1	1	13	16	8.9999
(((	chr22:50035610-50035867(-)$1	1	3	6	8.9999
...	chr6:31785513-31785771(+)$1	1	8	11	8.9999
)))	chr8:101730010-101730215(-)$1	1	41	44	8.9999
...	chr19:4037209-4037472(+)$1	1	17	20	8.9999
(..	chr14:50052566-50052806(-)$1	1	10	13	8.9999
(.(	chr20:55093273-55093621(+)$1	1	10	13	8.9999
(((	chr19:39220971-39221197(+)$1	1	6	9	8.9999
.((	chr10:72187631-72187876(+)$1	1	2	5	8.9999
(((	chr16:89028435-89028706(-)$1	1	16	19	8.9999
(((	chr16:89629515-89629763(+)$1	1	6	9	8.9999
(((	chr7:107559931-107560218(+)$1	1	11	14	8.9999
)))	chr19:10941966-10942240(+)$1	1	42	45	8.9999
...	chr3:47469976-47470241(-)$1	1	37	40	8.9999
)).	chr9:127998679-127998898(-)$1	1	31	34	8.9999
(..	chr8:11696378-11696632(+)$1	1	17	20	8.9999
..(	chr17:80858430-80858711(+)$1	1	2	5	8.9999
)))	chr12:120899406-120899706(-)$1	1	65	68	8.9999
(((	chr15:44855119-44855403(-)$1	1	34	37	8.9999
...	chr2:232037216-232037538(+)$1	1	9	12	8.9999
(.(	chr12:133138827-133139109(+)$1	1	16	19	8.9999
)))	chr8:91269499-91269814(+)$1	1	177	180	8.9999
.((	chr11:126132785-126133048(-)$1	1	29	32	8.9999
(((	chr11:116649432-116649686(-)$1	1	28	31	8.9999
.((	chr2:132273524-132273812(+)$1	1	0	3	8.9999
(((	chr22:50036797-50037091(-)$1	1	22	25	8.9999
..(	chr7:103112262-103112549(-)$1	1	45	48	8.9999
(((	chr16:89020379-89020623(-)$1	1	46	49	8.9999
)))	chr2:47387321-47387567(-)$1	1	16	19	8.9999
(..	chr2:277306-277594(+)$1	1	12	15	8.9999
..(	chr19:1815423-1815684(-)$1	1	57	60	8.9999
)))	chr10:70864269-70864527(+)$1	1	153	156	8.9999
..(	chr9:127115691-127115981(-)$1	1	25	28	8.9999
)))	chrX:40510555-40510844(-)$1	1	52	55	8.9999
.((	chr1:182856458-182856797(+)$1	1	28	31	8.9999
(((	chr7:1474052-1474340(-)$1	1	13	16	8.9999
((.	chr11:118279620-118279917(+)$1	1	5	8	8.9999
...	chr22:50039272-50039520(-)$1	1	30	33	8.9999
(..	chr2:47606942-47607208(+)$1	1	4	7	8.9999
(((	chr22:35738472-35738724(+)$1	1	6	9	8.9999
(((	chr1:45976772-45976991(-)$1	1	15	18	8.9999
((.	chr19:1435379-1435657(+)$1	1	14	17	8.9999
((.	chr15:91503041-91503292(+)$1	1	57	60	8.9999
.))	chr1:46769277-46769525(+)$1	1	9	12	8.9999
).)	chr4:109543637-109543874(+)$1	1	40	43	8.9999
.))	chr18:43666031-43666296(-)$1	1	32	35	8.9999
(((	chr12:131360366-131360662(+)$1	1	11	14	8.9999
(((	chr17:79477236-79477506(-)$1	1	18	21	8.9999
(((	chr13:114562980-114563236(-)$1	1	6	9	8.9999
...	chr19:48618633-48618943(-)$1	1	15	18	8.9999
)))	chr12:63359046-63359317(+)$1	1	230	233	8.9999
((.	chr3:25639444-25639730(-)$1	1	12	15	8.9999
(((	chr7:44873759-44874050(-)$1	1	68	71	8.9999
.((	chr4:120987764-120988014(-)$1	1	11	14	8.9999
...	chr1:203839001-203839216(+)$1	1	35	38	8.9999
(((	chr4:100869233-100869461(-)$1	1	8	11	8.9999
(((	chr1:1431260-1431563(+)$1	1	5	8	8.9999
...	chr22:35740868-35741115(+)$1	1	5	8	8.9999
..(	chr5:6599662-6599936(-)$1	1	18	21	8.9999
..(	chr3:183901554-183901825(+)$1	1	27	30	8.9999
..(	chr6:158994393-158994659(+)$1	1	3	6	8.9999

#PSSM
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_UTR_m3_run1.nuc.txt

#NT
ggggcggggcgg	chr1:22263545-22263884(-)$1	339	34	46	28.6595
GGCGCGGGGCGG	chr12:123465179-123465439(+)$1	260	75	87	25.0425
gcggcggggggg	chr2:139259323-139259581(+)$1	258	82	94	20.8936
ggggcggggcgc	chr1:1243079-1243397(-)$1	318	61	73	24.7234
ggagcggggcgg	chr4:140098092-140098420(-)$1	328	28	40	24.7234
GGGGAGGCGCGG	chr17:4736726-4737008(+)$1	282	32	44	20.6808
GGGUCGGGGAGG	chr1:110527528-110527778(+)$1	250	177	189	20.8936
GGGGCGGGGCCG	chr12:120933825-120934087(+)$1	262	22	34	24.9361
ggggcggggagg	chr1:174968998-174969314(+)$1	316	23	35	25.2553
gggcuggggcgg	chr2:183902862-183903207(-)$1	345	99	111	20.5744
GGGGCGGAGCGA	chr3:51705161-51705412(+)$1	251	46	58	20.3617
ggggcggggcgc	chr1:9189006-9189299(-)$1	293	22	34	24.7234
ggggcggggcgg	chr22:26985916-26986185(-)$1	269	11	23	28.6595
ggggcugggcgg	chr14:64194609-64194845(-)$1	236	3	15	24.2978
gggccggggugg	chr1:11986164-11986447(-)$1	283	36	48	20.7872
ggggcggggcga	chr12:22199055-22199398(+)$1	343	59	71	24.8297
GGGGCGGGGCGA	chr1:156561480-156561769(+)$1	289	48	60	24.8297
ggggcgcggcgg	chr4:7045101-7045406(+)$1	305	155	167	24.1914
GGGGCGGGGCCU	chr17:73900830-73901072(-)$1	242	23	35	21.1063
CGGGCGGGGCCG	chr20:18568518-18568804(+)$1	286	247	259	20.5744
GGGGCGCGGCGG	chr2:130939790-130940065(+)$1	275	22	34	24.1914
GGGGCCGGGCCG	chr9:35748931-35749300(-)$1	369	210	222	20.5744
gggccgggccgg	chr2:11484235-11484483(-)$1	248	7	19	20.2553
UGGGCGGGGCAG	chr1:228327890-228328165(+)$1	275	11	23	20.2553
ggggaggggagg	chr12:46384157-46384436(-)$1	279	38	50	21.5319
ggggcggggccu	chr16:81069373-81069648(+)$1	275	59	71	21.1063
ggggcagggggg	chr19:41859613-41859881(-)$1	268	135	147	20.9999
ggcgcggggcgg	chr5:65017965-65018268(+)$1	303	47	59	25.0425
GGGGCGUGGCGU	chr19:19174722-19175023(+)$1	301	35	47	20.2553
CGGGCGGGACGG	chr1:1551181-1551560(+)$1	379	259	271	19.8297
ggggcgggcggg	chrX:20284586-20284811(-)$1	225	10	22	20.7872
GGCGUGGGGCGG	chr2:27255749-27256103(+)$1	354	152	164	20.9999
GGGGAGGCGCGG	chr1:935206-935560(-)$1	354	187	199	20.6808
ggggcggggcgg	chr13:45992329-45992577(-)$1	248	3	15	28.6595
GGGGCGGGGCGG	chr11:46403147-46403415(+)$1	268	7	19	28.6595
gcggcggggcgg	chr17:27916391-27916685(-)$1	294	67	79	24.4042
ggcgcggggcgg	chr19:39833022-39833322(+)$1	300	213	225	25.0425
UGGGCGGGGCGG	chr2:219187804-219188057(+)$1	253	59	71	24.2978
GGAGCAGGGCGG	chr18:33708982-33709223(-)$1	241	165	177	20.5744
GGGGCAGGGAGG	chr10:7830063-7830325(+)$1	262	220	232	21.1063
ggggcggguggg	chr5:38556365-38556616(-)$1	251	191	203	20.6808
GGCGCGGCGCGG	chr3:30648009-30648311(+)$1	302	278	290	20.7872
GGGGAGGGGCGG	chr9:19127335-19127614(-)$1	279	73	85	24.9361
GGUGCGGGGAGG	chr3:196695481-196695764(-)$1	283	245	257	21.2127
gaggagggGCGG	chr11:85779941-85780215(-)$1	274	20	32	20.4680
GGGGCGGGGCAG	chr7:35734240-35734501(-)$1	261	199	211	24.6170

#otherMatches

#Struct PSSM
hh]ccc::dddd	chrX:41782310-41782568(-)$1	258	133	145	20.3617
mmmdddd]bb]c	chr1:22263545-22263884(-)$1	339	34	46	28.6595
cccffffff]ee	chr12:123465179-123465439(+)$1	260	75	87	25.0425
iiii]ccc]a]c	chr2:139259323-139259581(+)$1	258	82	94	20.8936
EE{BB::cccff	chr1:1243079-1243397(-)$1	318	61	73	24.7234
DDDDAbb[bbhh	chr4:140098092-140098420(-)$1	328	28	40	24.7234
iiii[bb[bboo	chr17:4736726-4737008(+)$1	282	32	44	20.6808
c[ccc"""bb##	chr1:110527528-110527778(+)$1	250	177	189	20.8936
GGGGGGGGGGGG	chr12:120933825-120934087(+)$1	262	22	34	24.9361
:DDDDCCCKKCC	chr1:174968998-174969314(+)$1	316	23	35	25.2553
e::dddd[bbnn	chr2:183902862-183903207(-)$1	345	99	111	20.5744
HHHHHeeeee!!	chr3:51705161-51705412(+)$1	251	46	58	20.3617
dddd[a[ccccc	chr1:9189006-9189299(-)$1	293	22	34	24.7234
F{HHHHHHHHhh	chr22:26985916-26986185(-)$1	269	11	23	28.6595
DDHHHHHHHH{D	chr14:64194609-64194845(-)$1	236	3	15	24.2978
fff[bbffffff	chr1:11986164-11986447(-)$1	283	36	48	20.7872
[a[ccc[cccqq	chr12:22199055-22199398(+)$1	343	59	71	24.8297
eeeee]dddd]d	chr1:156561480-156561769(+)$1	289	48	60	24.8297
JJJJJJJJJJbb	chr4:7045101-7045406(+)$1	305	155	167	24.1914
mmccc::dddd[	chr17:73900830-73901072(-)$1	242	23	35	21.1063
cceeeeeccc]d	chr20:18568518-18568804(+)$1	286	247	259	20.5744
HHHHHHH{BBcc	chr2:130939790-130940065(+)$1	275	22	34	24.1914
d!!ggggggg##	chr9:35748931-35749300(-)$1	369	210	222	20.5744
eeeee!!ccc[d	chr2:11484235-11484483(-)$1	248	7	19	20.2553
GGGGGGG{CCCH	chr1:228327890-228328165(+)$1	275	11	23	20.2553
eebb[bb[dddd	chr12:46384157-46384436(-)$1	279	38	50	21.5319
===========:	chr16:81069373-81069648(+)$1	275	59	71	21.1063
eeeee:ffffff	chr19:41859613-41859881(-)$1	268	135	147	20.9999
eeee[ggggggg	chr5:65017965-65018268(+)$1	303	47	59	25.0425
========[eee	chr19:19174722-19175023(+)$1	301	35	47	20.2553
]bbggggggg::	chr1:1551181-1551560(+)$1	379	259	271	19.8297
mmccc]cccFFF	chrX:20284586-20284811(-)$1	225	10	22	20.7872
A}JJJJJJJJJJ	chr2:27255749-27256103(+)$1	354	152	164	20.9999
ddd22bb]ccc]	chr1:935206-935560(-)$1	354	187	199	20.6808
b===========	chr13:45992329-45992577(-)$1	248	3	15	28.6595
iii[aooooooa	chr11:46403147-46403415(+)$1	268	7	19	28.6595
JJJJJJ{CCC{B	chr17:27916391-27916685(-)$1	294	67	79	24.4042
f]ccc]a]bb]a	chr19:39833022-39833322(+)$1	300	213	225	25.0425
mmccc666666e	chr2:219187804-219188057(+)$1	253	59	71	24.2978
b22cccffffff	chr18:33708982-33709223(-)$1	241	165	177	20.5744
dddFFFFFFZZZ	chr10:7830063-7830325(+)$1	262	220	232	21.1063
EEEE}CCCHHHH	chr5:38556365-38556616(-)$1	251	191	203	20.6808
DDDD}EEEEEFF	chr3:30648009-30648311(+)$1	302	278	290	20.7872
BB{GGGGGGGbb	chr9:19127335-19127614(-)$1	279	73	85	24.9361
YGGGGGGGYYDD	chr3:196695481-196695764(-)$1	283	245	257	21.2127
GGGGGKKIIIII	chr11:85779941-85780215(-)$1	274	20	32	20.4680
[bb[eeeeeooo	chr7:35734240-35734501(-)$1	261	199	211	24.6170

#DB
)).)))..((((	chrX:41782310-41782568(-)$1	1	133	145	20.3617
...)))).)).)	chr1:22263545-22263884(-)$1	1	34	46	28.6595
))))))))).))	chr12:123465179-123465439(+)$1	1	75	87	25.0425
)))).))).).)	chr2:139259323-139259581(+)$1	1	82	94	20.8936
((.((..(((((	chr1:1243079-1243397(-)$1	1	61	73	24.7234
(((((((.((((	chr4:140098092-140098420(-)$1	1	28	40	24.7234
((((.((.((..	chr17:4736726-4737008(+)$1	1	32	44	20.6808
(.(((...((..	chr1:110527528-110527778(+)$1	1	177	189	20.8936
((((((((((((	chr12:120933825-120934087(+)$1	1	22	34	24.9361
.(((((((..((	chr1:174968998-174969314(+)$1	1	23	35	25.2553
)..((((.((..	chr2:183902862-183903207(-)$1	1	99	111	20.5744
((((((((((..	chr3:51705161-51705412(+)$1	1	46	58	20.3617
((((.(.(((((	chr1:9189006-9189299(-)$1	1	22	34	24.7234
(.((((((((((	chr22:26985916-26986185(-)$1	1	11	23	28.6595
((((((((((.(	chr14:64194609-64194845(-)$1	1	3	15	24.2978
(((.((((((((	chr1:11986164-11986447(-)$1	1	36	48	20.7872
.(.(((.(((..	chr12:22199055-22199398(+)$1	1	59	71	24.8297
))))).)))).)	chr1:156561480-156561769(+)$1	1	48	60	24.8297
((((((((((((	chr4:7045101-7045406(+)$1	1	155	167	24.1914
..)))..((((.	chr17:73900830-73901072(-)$1	1	23	35	21.1063
)))))))))).)	chr20:18568518-18568804(+)$1	1	247	259	20.5744
(((((((.((((	chr2:130939790-130940065(+)$1	1	22	34	24.1914
(..(((((((..	chr9:35748931-35749300(-)$1	1	210	222	20.5744
(((((..(((.(	chr2:11484235-11484483(-)$1	1	7	19	20.2553
(((((((.((((	chr1:228327890-228328165(+)$1	1	11	23	20.2553
((((.((.((((	chr12:46384157-46384436(-)$1	1	38	50	21.5319
))))))))))).	chr16:81069373-81069648(+)$1	1	59	71	21.1063
))))).((((((	chr19:41859613-41859881(-)$1	1	135	147	20.9999
((((.(((((((	chr5:65017965-65018268(+)$1	1	47	59	25.0425
((((((((.(((	chr19:19174722-19175023(+)$1	1	35	47	20.2553
.)))))))))..	chr1:1551181-1551560(+)$1	1	259	271	19.8297
..))).)))(((	chrX:20284586-20284811(-)$1	1	10	22	20.7872
).))))))))))	chr2:27255749-27256103(+)$1	1	152	164	20.9999
)))..)).))).	chr1:935206-935560(-)$1	1	187	199	20.6808
((((((((((((	chr13:45992329-45992577(-)$1	1	3	15	28.6595
(((.(......)	chr11:46403147-46403415(+)$1	1	7	19	28.6595
((((((.(((.(	chr17:27916391-27916685(-)$1	1	67	79	24.4042
).))).).)).)	chr19:39833022-39833322(+)$1	1	213	225	25.0425
..)))......)	chr2:219187804-219188057(+)$1	1	59	71	24.2978
)..)))))))))	chr18:33708982-33709223(-)$1	1	165	177	20.5744
)))))))))...	chr10:7830063-7830325(+)$1	1	220	232	21.1063
)))).)))))))	chr5:38556365-38556616(-)$1	1	191	203	20.6808
)))).)))))))	chr3:30648009-30648311(+)$1	1	278	290	20.7872
((.(((((((((	chr9:19127335-19127614(-)$1	1	73	85	24.9361
.)))))))..))	chr3:196695481-196695764(-)$1	1	245	257	21.2127
(((((..(((((	chr11:85779941-85780215(-)$1	1	20	32	20.4680
.((.(((((...	chr7:35734240-35734501(-)$1	1	199	211	24.6170

#PSSM
g : 0.51	G : 0.40	C : 0.04	U : 0.04	
G : 0.48	g : 0.42	c : 0.06	a : 0.02	
g : 0.44	G : 0.38	C : 0.06	c : 0.04	a : 0.02	A : 0.02	U : 0.02	
G : 0.46	g : 0.42	c : 0.08	U : 0.02	
c : 0.44	C : 0.40	A : 0.06	a : 0.04	u : 0.02	U : 0.02	
g : 0.46	G : 0.42	A : 0.04	u : 0.02	C : 0.02	a : 0.02	
g : 0.48	G : 0.44	c : 0.02	C : 0.02	U : 0.02	
g : 0.51	G : 0.40	C : 0.06	A : 0.02	
G : 0.48	g : 0.42	c : 0.04	A : 0.02	u : 0.02	
C : 0.44	c : 0.34	g : 0.08	A : 0.06	a : 0.04	u : 0.02	
g : 0.46	G : 0.38	C : 0.08	A : 0.04	c : 0.02	
G : 0.42	g : 0.40	c : 0.04	A : 0.04	U : 0.04	a : 0.02	u : 0.02	

#score	1073.0638297872338
#seq	47
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_UTR_m1_run1.nuc.txt

#NT
UUGCCUUU	chr3:31677512-31677767(+)$1	255	97	105	15.4583
UUGCUUUU	chr17:27588810-27589069(-)$1	259	14	22	19.7291
UUACUUUU	chr12:98928460-98928701(+)$1	241	142	150	16.2916
UUCCUUUU	chr6:38644776-38644997(-)$1	221	72	80	16.3958
UUUCUUUU	chrX:24005703-24005988(-)$1	285	104	112	16.9166
AUGCuuuu	chr15:41672874-41673139(+)$1	265	179	187	15.3541
UGGCUUUU	chr15:42824602-42824879(+)$1	277	91	99	15.2500
UUUCUUUU	chr3:152180289-152180537(+)$1	248	133	141	16.9166
UUUCUUUU	chr12:53854758-53854995(+)$1	237	22	30	16.9166
GUGCUUUU	chr19:582934-583178(+)$1	244	219	227	15.2500
UUGGUUUU	chr1:228285859-228286133(+)$1	274	234	242	15.9791
UUACUUUU	chr1:28177537-28177801(+)$1	264	163	171	16.2916
UUGCUUUG	chr11:75111668-75111875(+)$1	207	51	59	15.1458
UUGCAUUU	chr5:179157460-179157680(+)$1	220	42	50	15.4583
UUUCUUUU	chr16:23584387-23584648(+)$1	261	32	40	16.9166
UUGCAUUU	chr2:74441461-74441729(+)$1	268	230	238	15.4583
UUGCCUUU	chr5:172461379-172461630(+)$1	251	165	173	15.4583
uugcuuuc	chr5:41919175-41919430(+)$1	255	47	55	15.2500
UUGCUUAU	chr2:136540438-136540715(+)$1	277	215	223	15.0416
UUGCGUUU	chr17:45761482-45761744(+)$1	262	44	52	15.3541
uugcuuuc	chr9:130950104-130950313(-)$1	209	86	94	15.2500
UUGGUUUU	chr2:74383233-74383492(-)$1	259	235	243	15.9791
UUGGUUUU	chr20:34239938-34240210(-)$1	272	61	69	15.9791
uggcuuuu	chr16:20747287-20747592(-)$1	305	234	242	15.2500
UUGCUUUU	chr6:31785415-31785666(+)$1	251	169	177	19.7291
uugauuuu	chr8:109229475-109229765(-)$1	290	221	229	15.8750
UUGUUUUU	chr11:118472108-118472359(+)$1	251	27	35	16.0833
UAGCUUUU	chr16:85706575-85706876(+)$1	301	209	217	15.1458
UUGCUUGU	chr5:108671227-108671539(-)$1	312	131	139	15.0416
UUGCUUUU	chr6:31785486-31785751(+)$1	265	98	106	19.7291
UUGUUUUU	chr10:98281165-98281484(-)$1	319	234	242	16.0833
UUGCUUUU	chr2:47129423-47129681(-)$1	258	1	9	19.7291
UUGCUUUU	chr9:464947-465231(+)$1	284	24	32	19.7291
UUGCUAUU	chr2:74441916-74442176(+)$1	260	79	87	15.0416
UUUCUUUU	chr22:22116204-22116480(-)$1	276	237	245	16.9166
UUGCUGUU	chr5:89813552-89813799(-)$1	247	8	16	15.0416
UUGAUUUU	chr4:48424074-48424369(+)$1	295	274	282	15.8750
uuguuuuu	chr17:44108412-44108696(-)$1	284	23	31	16.0833
UUCCUUUU	chr1:84967408-84967623(-)$1	215	83	91	16.3958
AUGCUUUU	chr3:196198915-196199232(-)$1	317	29	37	15.3541
UUGCUUUU	chr21:17250996-17251281(+)$1	285	83	91	19.7291
CUGCUUUU	chr15:41571914-41572158(+)$1	244	148	156	15.2500
UUUCUUUU	chr5:94799839-94800126(-)$1	287	205	213	16.9166
UUCCUUUU	chr6:38644746-38644976(-)$1	230	51	59	16.3958
UUUCUUUU	chr16:67133377-67133644(+)$1	267	61	69	16.9166
UUUCUUUU	chrX:24095336-24095604(+)$1	268	238	246	16.9166
UUGUUUUU	chr6:119498327-119498597(-)$1	270	77	85	16.0833

#otherMatches

#Struct PSSM
::::::GG	chr16:18804134-18804397(-)$1	263	89	97	19.7291
hhhhhhhh	chr3:31677512-31677767(+)$1	255	97	105	15.4583
mmbb]ggg	chr17:27588810-27589069(-)$1	259	14	22	19.7291
55bb::::	chr12:98928460-98928701(+)$1	241	142	150	16.2916
hhh%%%%%	chr6:38644776-38644997(-)$1	221	72	80	16.3958
::::::::	chrX:24005703-24005988(-)$1	285	104	112	16.9166
ee]ccc]b	chr15:41672874-41673139(+)$1	265	179	187	15.3541
ggg>>>>>	chr15:42824602-42824879(+)$1	277	91	99	15.2500
2ggggggg	chr3:152180289-152180537(+)$1	248	133	141	16.9166
:::dddd[	chr12:53854758-53854995(+)$1	237	22	30	16.9166
::::::::	chr19:582934-583178(+)$1	244	219	227	15.2500
========	chr1:228285859-228286133(+)$1	274	234	242	15.9791
nnndddd2	chr1:28177537-28177801(+)$1	264	163	171	16.2916
qqqqqqqd	chr11:75111668-75111875(+)$1	207	51	59	15.1458
dddd]bb3	chr5:179157460-179157680(+)$1	220	42	50	15.4583
rrrrffff	chr16:23584387-23584648(+)$1	261	32	40	16.9166
fffffxxx	chr2:74441461-74441729(+)$1	268	230	238	15.4583
!cccpppp	chr5:172461379-172461630(+)$1	251	165	173	15.4583
EEEEE:::	chr5:41919175-41919430(+)$1	255	47	55	15.2500
cc&&&&&&	chr2:136540438-136540715(+)$1	277	215	223	15.0416
ggg[a^^^	chr17:45761482-45761744(+)$1	262	44	52	15.3541
fff"""cc	chr9:130950104-130950313(-)$1	209	86	94	15.2500
::::::::	chr2:74383233-74383492(-)$1	259	235	243	15.9791
c]hhhhhh	chr20:34239938-34240210(-)$1	272	61	69	15.9791
ddddeeee	chr16:20747287-20747592(-)$1	305	234	242	15.2500
pffffff6	chr6:31785415-31785666(+)$1	251	169	177	19.7291
ffffff33	chr8:109229475-109229765(-)$1	290	221	229	15.8750
{GGGGGGG	chr11:118472108-118472359(+)$1	251	27	35	16.0833
YBB}BB~~	chr16:85706575-85706876(+)$1	301	209	217	15.1458
uuuuuudd	chr5:108671227-108671539(-)$1	312	131	139	15.0416
pffffff6	chr6:31785486-31785751(+)$1	265	98	106	19.7291
ehhhhhhh	chr10:98281165-98281484(-)$1	319	234	242	16.0833
:::::::C	chr2:47129423-47129681(-)$1	258	1	9	19.7291
EEEJJJJJ	chr9:464947-465231(+)$1	284	24	32	19.7291
::EEEEEF	chr2:74441916-74442176(+)$1	260	79	87	15.0416
eee]ccc]	chr22:22116204-22116480(-)$1	276	237	245	16.9166
gggggggn	chr5:89813552-89813799(-)$1	247	8	16	15.0416
]ggggggg	chr4:48424074-48424369(+)$1	295	274	282	15.8750
::::::::	chr17:44108412-44108696(-)$1	284	23	31	16.0833
666666ff	chr1:84967408-84967623(-)$1	215	83	91	16.3958
::hhhhhh	chr3:196198915-196199232(-)$1	317	29	37	15.3541
^^^^^^^^	chr21:17250996-17251281(+)$1	285	83	91	19.7291
eeeee:::	chr15:41571914-41572158(+)$1	244	148	156	15.2500
ee]ggggg	chr5:94799839-94800126(-)$1	287	205	213	16.9166
hhh%%%%%	chr6:38644746-38644976(-)$1	230	51	59	16.3958
:::::ccc	chr16:67133377-67133644(+)$1	267	61	69	16.9166
dddd6666	chrX:24095336-24095604(+)$1	268	238	246	16.9166
YYEEEEE}	chr6:119498327-119498597(-)$1	270	77	85	16.0833

#DB
......((	chr16:18804134-18804397(-)$1	1	89	97	19.7291
))))))))	chr3:31677512-31677767(+)$1	1	97	105	15.4583
..)).)))	chr17:27588810-27589069(-)$1	1	14	22	19.7291
..))....	chr12:98928460-98928701(+)$1	1	142	150	16.2916
(((.....	chr6:38644776-38644997(-)$1	1	72	80	16.3958
........	chrX:24005703-24005988(-)$1	1	104	112	16.9166
)).))).)	chr15:41672874-41673139(+)$1	1	179	187	15.3541
))).....	chr15:42824602-42824879(+)$1	1	91	99	15.2500
.)))))))	chr3:152180289-152180537(+)$1	1	133	141	16.9166
...((((.	chr12:53854758-53854995(+)$1	1	22	30	16.9166
........	chr19:582934-583178(+)$1	1	219	227	15.2500
))))))))	chr1:228285859-228286133(+)$1	1	234	242	15.9791
...)))).	chr1:28177537-28177801(+)$1	1	163	171	16.2916
.......)	chr11:75111668-75111875(+)$1	1	51	59	15.1458
)))).)).	chr5:179157460-179157680(+)$1	1	42	50	15.4583
....))))	chr16:23584387-23584648(+)$1	1	32	40	16.9166
(((((...	chr2:74441461-74441729(+)$1	1	230	238	15.4583
.(((....	chr5:172461379-172461630(+)$1	1	165	173	15.4583
(((((...	chr5:41919175-41919430(+)$1	1	47	55	15.2500
((......	chr2:136540438-136540715(+)$1	1	215	223	15.0416
(((.(...	chr17:45761482-45761744(+)$1	1	44	52	15.3541
(((...((	chr9:130950104-130950313(-)$1	1	86	94	15.2500
........	chr2:74383233-74383492(-)$1	1	235	243	15.9791
).))))))	chr20:34239938-34240210(-)$1	1	61	69	15.9791
))))((((	chr16:20747287-20747592(-)$1	1	234	242	15.2500
.)))))).	chr6:31785415-31785666(+)$1	1	169	177	19.7291
))))))..	chr8:109229475-109229765(-)$1	1	221	229	15.8750
.(((((((	chr11:118472108-118472359(+)$1	1	27	35	16.0833
.)).))..	chr16:85706575-85706876(+)$1	1	209	217	15.1458
......))	chr5:108671227-108671539(-)$1	1	131	139	15.0416
.)))))).	chr6:31785486-31785751(+)$1	1	98	106	19.7291
))))))))	chr10:98281165-98281484(-)$1	1	234	242	16.0833
.......(	chr2:47129423-47129681(-)$1	1	1	9	19.7291
((((((((	chr9:464947-465231(+)$1	1	24	32	19.7291
..((((((	chr2:74441916-74442176(+)$1	1	79	87	15.0416
))).))).	chr22:22116204-22116480(-)$1	1	237	245	16.9166
(((((((.	chr5:89813552-89813799(-)$1	1	8	16	15.0416
.)))))))	chr4:48424074-48424369(+)$1	1	274	282	15.8750
........	chr17:44108412-44108696(-)$1	1	23	31	16.0833
......))	chr1:84967408-84967623(-)$1	1	83	91	16.3958
..((((((	chr3:196198915-196199232(-)$1	1	29	37	15.3541
........	chr21:17250996-17251281(+)$1	1	83	91	19.7291
)))))...	chr15:41571914-41572158(+)$1	1	148	156	15.2500
)).)))))	chr5:94799839-94800126(-)$1	1	205	213	16.9166
(((.....	chr6:38644746-38644976(-)$1	1	51	59	16.3958
.....(((	chr16:67133377-67133644(+)$1	1	61	69	16.9166
))))....	chrX:24095336-24095604(+)$1	1	238	246	16.9166
..))))).	chr6:119498327-119498597(-)$1	1	77	85	16.0833

#PSSM
U : 0.81	u : 0.10	A : 0.04	G : 0.02	C : 0.02	
U : 0.85	u : 0.08	G : 0.02	g : 0.02	A : 0.02	
G : 0.62	U : 0.16	g : 0.10	C : 0.06	A : 0.04	
C : 0.75	G : 0.06	c : 0.06	U : 0.06	a : 0.02	A : 0.02	u : 0.02	
U : 0.77	u : 0.12	C : 0.04	A : 0.04	G : 0.02	
U : 0.83	u : 0.12	A : 0.02	G : 0.02	
U : 0.83	u : 0.12	A : 0.02	G : 0.02	
U : 0.85	u : 0.08	c : 0.04	G : 0.02	

#score	789.0833333333334
#seq	48
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_CDS_m2_run2.nuc.txt

#NT
GGA	chr6:144758714-144758980(+)$1	266	64	67	8.9999
GGA	chr22:20073439-20073660(+)$1	221	49	52	8.9999
GGA	chr8:103424328-103424631(-)$1	303	0	3	8.9999
GGA	chr2:85769590-85769803(+)$1	213	7	10	8.9999
gga	chrX:48814597-48814832(-)$1	235	99	102	8.9999
GGA	chr14:24901507-24901777(+)$1	270	8	11	8.9999
GGA	chr17:41622778-41623041(+)$1	263	10	13	8.9999
GGA	chr1:36788404-36788682(+)$1	278	44	47	8.9999
GGA	chr3:184044979-184045233(+)$1	254	23	26	8.9999
gga	chr9:101558572-101558850(-)$1	278	23	26	8.9999
GGA	chr12:62996652-62996877(+)$1	225	118	121	8.9999
GGA	chr1:19487406-19487667(-)$1	261	1	4	8.9999
GGA	chr2:219267019-219267245(+)$1	226	66	69	8.9999
GGA	chr2:231902493-231902754(+)$1	261	143	146	8.9999
GGA	chr10:70481251-70481487(+)$1	236	115	118	8.9999
GGA	chr19:798434-798702(+)$1	268	85	88	8.9999
GGA	chr12:72056738-72057002(-)$1	264	13	16	8.9999
GGA	chr2:242591218-242591472(+)$1	254	13	16	8.9999
gga	chr13:113863808-113864055(+)$1	247	37	40	8.9999
GGA	chr3:50103764-50104027(+)$1	263	38	41	8.9999
GGA	chr2:219265477-219265718(+)$1	241	114	117	8.9999
GGA	chr2:54197724-54198040(-)$1	316	40	43	8.9999
gga	chr1:1284336-1284625(-)$1	289	2	5	8.9999
GGA	chr1:19441218-19441471(-)$1	253	49	52	8.9999
GGA	chr2:231902428-231902693(+)$1	265	1	4	8.9999
GGA	chr22:20073541-20073768(+)$1	227	4	7	8.9999
GGA	chr1:19490767-19491022(-)$1	255	96	99	8.9999
GGA	chr22:20073460-20073683(+)$1	223	28	31	8.9999
GGA	chr22:20073745-20073984(+)$1	239	57	60	8.9999
GGA	chrX:53581753-53581989(-)$1	236	14	17	8.9999
GGA	chr1:234614072-234614332(-)$1	260	10	13	8.9999
GGA	chr7:11022475-11022744(+)$1	269	1	4	8.9999
GGA	chr7:150935257-150935515(+)$1	258	62	65	8.9999
GGA	chr19:917368-917661(+)$1	293	7	10	8.9999
GGA	chr17:79972868-79973103(+)$1	235	53	56	8.9999
GGA	chr14:31592102-31592343(-)$1	241	145	148	8.9999
GGA	chr12:62996802-62997021(+)$1	219	6	9	8.9999
GGA	chr3:49055820-49056130(-)$1	310	36	39	8.9999
GGA	chr3:49050094-49050362(+)$1	268	15	18	8.9999
GGA	chr12:62996872-62997155(+)$1	283	74	77	8.9999
GGA	chr22:20073618-20073850(+)$1	232	14	17	8.9999
GGA	chr17:57232267-57232552(-)$1	285	9	12	8.9999
gga	chr9:101558430-101558693(-)$1	263	6	9	8.9999
GGA	chr10:120802012-120802296(-)$1	284	12	15	8.9999
GGA	chr6:56334845-56335176(-)$1	331	115	118	8.9999
GGA	chr16:30205863-30206161(+)$1	298	5	8	8.9999
GGA	chr17:8108125-8108364(-)$1	239	4	7	8.9999
GGA	chr1:19490158-19490394(-)$1	236	67	70	8.9999
GGA	chr7:150935456-150935697(+)$1	241	1	4	8.9999
GGA	chr17:79860502-79860766(-)$1	264	36	39	8.9999
GGA	chr6:144809778-144809994(+)$1	216	53	56	8.9999
GGA	chr3:49050843-49051138(+)$1	295	42	45	8.9999
GGA	chr14:24901166-24901424(+)$1	258	5	8	8.9999
GGA	chr22:20073651-20073904(+)$1	253	3	6	8.9999
GGA	chr22:20073483-20073710(+)$1	227	5	8	8.9999
GGA	chr22:20073596-20073818(+)$1	222	36	39	8.9999
GGA	chr7:150935332-150935609(+)$1	277	100	103	8.9999
GGA	chr3:49049769-49049982(+)$1	213	20	23	8.9999
GGA	chr17:80197785-80198011(+)$1	226	38	41	8.9999
GGA	chr7:150935603-150935845(+)$1	242	94	97	8.9999
GGA	chr22:20073510-20073741(+)$1	231	21	24	8.9999
GGA	chr12:62996821-62997049(+)$1	228	21	24	8.9999
GGA	chr16:28878142-28878383(+)$1	241	6	9	8.9999
GGA	chr9:116984402-116984634(+)$1	232	26	29	8.9999
GGA	chr12:62996785-62997002(+)$1	217	7	10	8.9999
GGA	chr22:20073885-20074174(+)$1	289	15	18	8.9999
GGA	chr12:62996849-62997072(+)$1	223	15	18	8.9999
GGA	chr6:7581201-7581452(+)$1	251	3	6	8.9999
GGA	chr5:179046223-179046484(-)$1	261	80	83	8.9999
GGA	chr17:36760601-36760863(-)$1	262	52	55	8.9999
GGA	chr12:19592491-19592784(+)$1	293	46	49	8.9999
GGA	chr19:46522370-46522671(+)$1	301	2	5	8.9999
GGA	chr16:2580589-2580922(+)$1	333	12	15	8.9999
GGA	chr22:20074000-20074330(+)$1	330	31	34	8.9999
GGA	chr22:20073784-20074049(+)$1	265	18	21	8.9999
GGA	chr22:20073375-20073639(+)$1	264	8	11	8.9999
GGA	chr2:166771761-166772018(-)$1	257	36	39	8.9999
GGA	chr2:54856728-54856971(+)$1	243	26	29	8.9999
GGA	chr7:150935645-150935908(+)$1	263	52	55	8.9999
GGA	chr7:77166718-77166983(+)$1	265	1	4	8.9999
GGA	chr11:57564218-57564487(+)$1	269	3	6	8.9999
GGA	chr2:27435069-27435327(+)$1	258	31	34	8.9999
GGA	chr6:4032034-4032290(+)$1	256	43	46	8.9999
GGA	chr3:49050193-49050494(+)$1	301	12	15	8.9999
GGA	chr4:1804673-1804902(+)$1	229	23	26	8.9999
GGA	chr12:62997004-62997266(+)$1	262	9	12	8.9999
GGA	chr3:49051134-49051365(+)$1	231	22	25	8.9999
GGA	chr5:179248449-179248705(+)$1	256	1	4	8.9999
gga	chr9:101558650-101558912(-)$1	262	52	55	8.9999
GGA	chr12:62996677-62996969(+)$1	292	93	96	8.9999
GGA	chr2:231902590-231902854(+)$1	264	46	49	8.9999
GGA	chr1:27320160-27320412(+)$1	252	3	6	8.9999
GGA	chrX:48814295-48814548(-)$1	253	222	225	8.9999

#otherMatches

#Struct PSSM
bb:	chr16:28877649-28877919(+)$1	270	62	65	8.9999
vvv	chr6:144758714-144758980(+)$1	266	64	67	8.9999
GGG	chr22:20073439-20073660(+)$1	221	49	52	8.9999
:::	chr8:103424328-103424631(-)$1	303	0	3	8.9999
mmm	chr2:85769590-85769803(+)$1	213	7	10	8.9999
bb]	chrX:48814597-48814832(-)$1	235	99	102	8.9999
dd#	chr14:24901507-24901777(+)$1	270	8	11	8.9999
b!!	chr17:41622778-41623041(+)$1	263	10	13	8.9999
ee:	chr1:36788404-36788682(+)$1	278	44	47	8.9999
EEE	chr3:184044979-184045233(+)$1	254	23	26	8.9999
BBK	chr9:101558572-101558850(-)$1	278	23	26	8.9999
fcc	chr12:62996652-62996877(+)$1	225	118	121	8.9999
eee	chr1:19487406-19487667(-)$1	261	1	4	8.9999
bbi	chr2:219267019-219267245(+)$1	226	66	69	8.9999
BB}	chr2:231902493-231902754(+)$1	261	143	146	8.9999
cc2	chr10:70481251-70481487(+)$1	236	115	118	8.9999
c22	chr19:798434-798702(+)$1	268	85	88	8.9999
DDD	chr12:72056738-72057002(-)$1	264	13	16	8.9999
DCC	chr2:242591218-242591472(+)$1	254	13	16	8.9999
F::	chr13:113863808-113864055(+)$1	247	37	40	8.9999
DDD	chr3:50103764-50104027(+)$1	263	38	41	8.9999
"""	chr2:219265477-219265718(+)$1	241	114	117	8.9999
bb]	chr2:54197724-54198040(-)$1	316	40	43	8.9999
DD{	chr1:1284336-1284625(-)$1	289	2	5	8.9999
ddd	chr1:19441218-19441471(-)$1	253	49	52	8.9999
ddd	chr2:231902428-231902693(+)$1	265	1	4	8.9999
GGG	chr22:20073541-20073768(+)$1	227	4	7	8.9999
fee	chr1:19490767-19491022(-)$1	255	96	99	8.9999
GGG	chr22:20073460-20073683(+)$1	223	28	31	8.9999
ccf	chr22:20073745-20073984(+)$1	239	57	60	8.9999
EEE	chrX:53581753-53581989(-)$1	236	14	17	8.9999
DEE	chr1:234614072-234614332(-)$1	260	10	13	8.9999
:::	chr7:11022475-11022744(+)$1	269	1	4	8.9999
ddd	chr7:150935257-150935515(+)$1	258	62	65	8.9999
ggg	chr19:917368-917661(+)$1	293	7	10	8.9999
eee	chr17:79972868-79973103(+)$1	235	53	56	8.9999
ggg	chr14:31592102-31592343(-)$1	241	145	148	8.9999
F::	chr12:62996802-62997021(+)$1	219	6	9	8.9999
MMM	chr3:49055820-49056130(-)$1	310	36	39	8.9999
PPP	chr3:49050094-49050362(+)$1	268	15	18	8.9999
cco	chr12:62996872-62997155(+)$1	283	74	77	8.9999
mmm	chr22:20073618-20073850(+)$1	232	14	17	8.9999
DDD	chr17:57232267-57232552(-)$1	285	9	12	8.9999
KKE	chr9:101558430-101558693(-)$1	263	6	9	8.9999
:::	chr10:120802012-120802296(-)$1	284	12	15	8.9999
fmm	chr6:56334845-56335176(-)$1	331	115	118	8.9999
EEE	chr16:30205863-30206161(+)$1	298	5	8	8.9999
ddd	chr17:8108125-8108364(-)$1	239	4	7	8.9999
ddd	chr1:19490158-19490394(-)$1	236	67	70	8.9999
eee	chr7:150935456-150935697(+)$1	241	1	4	8.9999
c""	chr17:79860502-79860766(-)$1	264	36	39	8.9999
fff	chr6:144809778-144809994(+)$1	216	53	56	8.9999
hhe	chr3:49050843-49051138(+)$1	295	42	45	8.9999
ddd	chr14:24901166-24901424(+)$1	258	5	8	8.9999
:::	chr22:20073651-20073904(+)$1	253	3	6	8.9999
GGG	chr22:20073483-20073710(+)$1	227	5	8	8.9999
BB{	chr22:20073596-20073818(+)$1	222	36	39	8.9999
ebb	chr7:150935332-150935609(+)$1	277	100	103	8.9999
eet	chr3:49049769-49049982(+)$1	213	20	23	8.9999
gmm	chr17:80197785-80198011(+)$1	226	38	41	8.9999
ggg	chr7:150935603-150935845(+)$1	242	94	97	8.9999
GGG	chr22:20073510-20073741(+)$1	231	21	24	8.9999
lll	chr12:62996821-62997049(+)$1	228	21	24	8.9999
eee	chr16:28878142-28878383(+)$1	241	6	9	8.9999
qqq	chr9:116984402-116984634(+)$1	232	26	29	8.9999
KDD	chr12:62996785-62997002(+)$1	217	7	10	8.9999
iii	chr22:20073885-20074174(+)$1	289	15	18	8.9999
DD:	chr12:62996849-62997072(+)$1	223	15	18	8.9999
FFF	chr6:7581201-7581452(+)$1	251	3	6	8.9999
eee	chr5:179046223-179046484(-)$1	261	80	83	8.9999
qqq	chr17:36760601-36760863(-)$1	262	52	55	8.9999
CC:	chr12:19592491-19592784(+)$1	293	46	49	8.9999
DDD	chr19:46522370-46522671(+)$1	301	2	5	8.9999
dd[	chr16:2580589-2580922(+)$1	333	12	15	8.9999
HHH	chr22:20074000-20074330(+)$1	330	31	34	8.9999
ALL	chr22:20073784-20074049(+)$1	265	18	21	8.9999
!dd	chr22:20073375-20073639(+)$1	264	8	11	8.9999
eee	chr2:166771761-166772018(-)$1	257	36	39	8.9999
!ee	chr2:54856728-54856971(+)$1	243	26	29	8.9999
bb[	chr7:150935645-150935908(+)$1	263	52	55	8.9999
{DD	chr7:77166718-77166983(+)$1	265	1	4	8.9999
:::	chr11:57564218-57564487(+)$1	269	3	6	8.9999
ppp	chr2:27435069-27435327(+)$1	258	31	34	8.9999
coo	chr6:4032034-4032290(+)$1	256	43	46	8.9999
ggg	chr3:49050193-49050494(+)$1	301	12	15	8.9999
:DD	chr4:1804673-1804902(+)$1	229	23	26	8.9999
CCC	chr12:62997004-62997266(+)$1	262	9	12	8.9999
CCC	chr3:49051134-49051365(+)$1	231	22	25	8.9999
:::	chr5:179248449-179248705(+)$1	256	1	4	8.9999
]a4	chr9:101558650-101558912(-)$1	262	52	55	8.9999
fcc	chr12:62996677-62996969(+)$1	292	93	96	8.9999
[a!	chr2:231902590-231902854(+)$1	264	46	49	8.9999
DDD	chr1:27320160-27320412(+)$1	252	3	6	8.9999
5bb	chrX:48814295-48814548(-)$1	253	222	225	8.9999

#DB
)).	chr16:28877649-28877919(+)$1	1	62	65	8.9999
...	chr6:144758714-144758980(+)$1	1	64	67	8.9999
(((	chr22:20073439-20073660(+)$1	1	49	52	8.9999
...	chr8:103424328-103424631(-)$1	1	0	3	8.9999
...	chr2:85769590-85769803(+)$1	1	7	10	8.9999
)).	chrX:48814597-48814832(-)$1	1	99	102	8.9999
((.	chr14:24901507-24901777(+)$1	1	8	11	8.9999
(..	chr17:41622778-41623041(+)$1	1	10	13	8.9999
)).	chr1:36788404-36788682(+)$1	1	44	47	8.9999
(((	chr3:184044979-184045233(+)$1	1	23	26	8.9999
((.	chr9:101558572-101558850(-)$1	1	23	26	8.9999
)))	chr12:62996652-62996877(+)$1	1	118	121	8.9999
(((	chr1:19487406-19487667(-)$1	1	1	4	8.9999
))(	chr2:219267019-219267245(+)$1	1	66	69	8.9999
)).	chr2:231902493-231902754(+)$1	1	143	146	8.9999
)).	chr10:70481251-70481487(+)$1	1	115	118	8.9999
)..	chr19:798434-798702(+)$1	1	85	88	8.9999
(((	chr12:72056738-72057002(-)$1	1	13	16	8.9999
(((	chr2:242591218-242591472(+)$1	1	13	16	8.9999
(..	chr13:113863808-113864055(+)$1	1	37	40	8.9999
(((	chr3:50103764-50104027(+)$1	1	38	41	8.9999
...	chr2:219265477-219265718(+)$1	1	114	117	8.9999
)).	chr2:54197724-54198040(-)$1	1	40	43	8.9999
((.	chr1:1284336-1284625(-)$1	1	2	5	8.9999
(((	chr1:19441218-19441471(-)$1	1	49	52	8.9999
(((	chr2:231902428-231902693(+)$1	1	1	4	8.9999
(((	chr22:20073541-20073768(+)$1	1	4	7	8.9999
)))	chr1:19490767-19491022(-)$1	1	96	99	8.9999
(((	chr22:20073460-20073683(+)$1	1	28	31	8.9999
(((	chr22:20073745-20073984(+)$1	1	57	60	8.9999
(((	chrX:53581753-53581989(-)$1	1	14	17	8.9999
(((	chr1:234614072-234614332(-)$1	1	10	13	8.9999
...	chr7:11022475-11022744(+)$1	1	1	4	8.9999
)))	chr7:150935257-150935515(+)$1	1	62	65	8.9999
(((	chr19:917368-917661(+)$1	1	7	10	8.9999
(((	chr17:79972868-79973103(+)$1	1	53	56	8.9999
)))	chr14:31592102-31592343(-)$1	1	145	148	8.9999
(..	chr12:62996802-62997021(+)$1	1	6	9	8.9999
...	chr3:49055820-49056130(-)$1	1	36	39	8.9999
...	chr3:49050094-49050362(+)$1	1	15	18	8.9999
((.	chr12:62996872-62997155(+)$1	1	74	77	8.9999
...	chr22:20073618-20073850(+)$1	1	14	17	8.9999
(((	chr17:57232267-57232552(-)$1	1	9	12	8.9999
..(	chr9:101558430-101558693(-)$1	1	6	9	8.9999
...	chr10:120802012-120802296(-)$1	1	12	15	8.9999
(..	chr6:56334845-56335176(-)$1	1	115	118	8.9999
(((	chr16:30205863-30206161(+)$1	1	5	8	8.9999
(((	chr17:8108125-8108364(-)$1	1	4	7	8.9999
)))	chr1:19490158-19490394(-)$1	1	67	70	8.9999
(((	chr7:150935456-150935697(+)$1	1	1	4	8.9999
(..	chr17:79860502-79860766(-)$1	1	36	39	8.9999
(((	chr6:144809778-144809994(+)$1	1	53	56	8.9999
)))	chr3:49050843-49051138(+)$1	1	42	45	8.9999
(((	chr14:24901166-24901424(+)$1	1	5	8	8.9999
...	chr22:20073651-20073904(+)$1	1	3	6	8.9999
(((	chr22:20073483-20073710(+)$1	1	5	8	8.9999
((.	chr22:20073596-20073818(+)$1	1	36	39	8.9999
)))	chr7:150935332-150935609(+)$1	1	100	103	8.9999
((.	chr3:49049769-49049982(+)$1	1	20	23	8.9999
(..	chr17:80197785-80198011(+)$1	1	38	41	8.9999
(((	chr7:150935603-150935845(+)$1	1	94	97	8.9999
(((	chr22:20073510-20073741(+)$1	1	21	24	8.9999
...	chr12:62996821-62997049(+)$1	1	21	24	8.9999
(((	chr16:28878142-28878383(+)$1	1	6	9	8.9999
...	chr9:116984402-116984634(+)$1	1	26	29	8.9999
.((	chr12:62996785-62997002(+)$1	1	7	10	8.9999
(((	chr22:20073885-20074174(+)$1	1	15	18	8.9999
((.	chr12:62996849-62997072(+)$1	1	15	18	8.9999
(((	chr6:7581201-7581452(+)$1	1	3	6	8.9999
(((	chr5:179046223-179046484(-)$1	1	80	83	8.9999
...	chr17:36760601-36760863(-)$1	1	52	55	8.9999
((.	chr12:19592491-19592784(+)$1	1	46	49	8.9999
(((	chr19:46522370-46522671(+)$1	1	2	5	8.9999
((.	chr16:2580589-2580922(+)$1	1	12	15	8.9999
(((	chr22:20074000-20074330(+)$1	1	31	34	8.9999
(..	chr22:20073784-20074049(+)$1	1	18	21	8.9999
.((	chr22:20073375-20073639(+)$1	1	8	11	8.9999
)))	chr2:166771761-166772018(-)$1	1	36	39	8.9999
.((	chr2:54856728-54856971(+)$1	1	26	29	8.9999
((.	chr7:150935645-150935908(+)$1	1	52	55	8.9999
.((	chr7:77166718-77166983(+)$1	1	1	4	8.9999
...	chr11:57564218-57564487(+)$1	1	3	6	8.9999
...	chr2:27435069-27435327(+)$1	1	31	34	8.9999
(..	chr6:4032034-4032290(+)$1	1	43	46	8.9999
(((	chr3:49050193-49050494(+)$1	1	12	15	8.9999
.((	chr4:1804673-1804902(+)$1	1	23	26	8.9999
(((	chr12:62997004-62997266(+)$1	1	9	12	8.9999
(((	chr3:49051134-49051365(+)$1	1	22	25	8.9999
...	chr5:179248449-179248705(+)$1	1	1	4	8.9999
.).	chr9:101558650-101558912(-)$1	1	52	55	8.9999
)))	chr12:62996677-62996969(+)$1	1	93	96	8.9999
.(.	chr2:231902590-231902854(+)$1	1	46	49	8.9999
(((	chr1:27320160-27320412(+)$1	1	3	6	8.9999
.))	chrX:48814295-48814548(-)$1	1	222	225	8.9999

#PSSM
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
A : 0.93	a : 0.06	

#score	845.9999999999998
#seq	94
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_UTR_m3_run2.nuc.txt

#NT
GUGGCC	chr16:1819635-1819884(+)$1	249	189	195	12.3396
CUGGGC	chr6:32942138-32942387(+)$1	249	134	140	11.6792
GUGGGC	chr16:28847500-28847728(+)$1	228	154	160	14.7924
GGGGGC	chr17:7322537-7322771(+)$1	234	41	47	10.7358
GUGGGC	chr20:57253717-57253965(+)$1	248	209	215	14.7924
CUGGGC	chr15:34672629-34672891(-)$1	262	32	38	11.6792
GUGGCC	chr7:151932798-151933050(-)$1	252	93	99	12.3396
GUGGCC	chr20:61919948-61920224(+)$1	276	53	59	12.3396
GUGGGC	chr12:80083947-80084207(-)$1	260	140	146	14.7924
CUGGGC	chr9:139098822-139099127(-)$1	305	108	114	11.6792
GUGGGC	chr2:62932900-62933158(+)$1	258	89	95	14.7924
GUGGCC	chr9:117032907-117033148(+)$1	241	125	131	12.3396
GUGGCC	chr15:34819062-34819308(-)$1	246	123	129	12.3396
GUGGCC	chr15:34672773-34673030(-)$1	257	66	72	12.3396
CUGGGC	chr18:13055941-13056203(+)$1	262	155	161	11.6792
GUGGGU	chr12:56632202-56632444(-)$1	242	84	90	10.5471
GUGGGC	chr16:84212121-84212380(-)$1	259	77	83	14.7924
GUGGGU	chr16:28222745-28222997(-)$1	252	91	97	10.5471
GGGGGC	chr16:28223001-28223293(-)$1	292	34	40	10.7358
GUGGGU	chr20:39803957-39804213(+)$1	256	114	120	10.5471
GUGGGC	chr19:38571987-38572294(+)$1	307	281	287	14.7924
GUGGGC	chr1:1596547-1596806(-)$1	259	102	108	14.7924
GGGGGC	chrX:18911299-18911540(-)$1	241	63	69	10.7358
GUGGCC	chr12:122626566-122626835(+)$1	269	104	110	12.3396
GUGGCC	chr1:226033438-226033685(-)$1	247	211	217	12.3396
GUGGGC	chr15:93568449-93568697(+)$1	248	207	213	14.7924
GGGGGC	chr6:43737933-43738174(+)$1	241	57	63	10.7358
GUGGGC	chr16:31501912-31502164(-)$1	252	120	126	14.7924
GUGGGC	chr2:234378606-234378864(+)$1	258	220	226	14.7924
CUGGGC	chr9:117031421-117031625(+)$1	204	114	120	11.6792
CUGGGC	chr9:139371928-139372179(-)$1	251	149	155	11.6792
CUGGGC	chr2:234379089-234379312(+)$1	223	36	42	11.6792
GUGGGU	chr17:36884635-36884912(+)$1	277	101	107	10.5471
GUGGGC	chr16:2147358-2147604(-)$1	246	44	50	14.7924
CUGGGC	chr16:46964820-46965111(+)$1	291	172	178	11.6792
GUGGUC	chr1:22856310-22856549(+)$1	239	178	184	11.3962
GUGGGC	chr20:61598925-61599155(+)$1	230	102	108	14.7924
GUGGCC	chr16:2649021-2649281(+)$1	260	50	56	12.3396
GUGGGC	chr3:132277146-132277402(-)$1	256	128	134	14.7924
GGGGGC	chr5:78809363-78809635(-)$1	272	59	65	10.7358
GUGGGC	chr17:2283312-2283530(+)$1	218	93	99	14.7924
CUGGGC	chr3:184102773-184103093(+)$1	320	149	155	11.6792
GUGGGC	chrX:153587649-153587872(-)$1	223	52	58	14.7924
GUGGGC	chr16:1819436-1819696(+)$1	260	150	156	14.7924
GUGGAC	chr19:10802238-10802478(+)$1	240	91	97	11.3018
GUGGUC	chr17:44249015-44249305(-)$1	290	226	232	11.3962
GUGGCC	chr6:41752974-41753285(+)$1	311	197	203	12.3396
GUGGGC	chr4:155511742-155511986(-)$1	244	186	192	14.7924
GUGGGC	chr4:1809015-1809335(+)$1	320	277	283	14.7924
GUGGCC	chr20:39801153-39801384(+)$1	231	107	113	12.3396
CUGGGC	chr20:25206090-25206369(+)$1	279	76	82	11.6792
GUGGGC	chr15:28510663-28510923(-)$1	260	240	246	14.7924

#otherMatches

#Struct PSSM
ff333g	chr6:159053288-159053517(+)$1	229	119	125	12.3396
gggggg	chr16:1819635-1819884(+)$1	249	189	195	12.3396
E{DDDD	chr6:32942138-32942387(+)$1	249	134	140	11.6792
[bbccc	chr16:28847500-28847728(+)$1	228	154	160	14.7924
MMMEEE	chr17:7322537-7322771(+)$1	234	41	47	10.7358
dd]ccc	chr20:57253717-57253965(+)$1	248	209	215	14.7924
======	chr15:34672629-34672891(-)$1	262	32	38	11.6792
oooccc	chr7:151932798-151933050(-)$1	252	93	99	12.3396
GGGGGK	chr20:61919948-61920224(+)$1	276	53	59	12.3396
CC}EEE	chr12:80083947-80084207(-)$1	260	140	146	14.7924
ffffff	chr9:139098822-139099127(-)$1	305	108	114	11.6792
]a]eee	chr2:62932900-62933158(+)$1	258	89	95	14.7924
""eeee	chr9:117032907-117033148(+)$1	241	125	131	12.3396
h::fff	chr15:34819062-34819308(-)$1	246	123	129	12.3396
:::fff	chr15:34672773-34673030(-)$1	257	66	72	12.3396
eeee[b	chr18:13055941-13056203(+)$1	262	155	161	11.6792
gg[a[a	chr12:56632202-56632444(-)$1	242	84	90	10.5471
444ggg	chr16:84212121-84212380(-)$1	259	77	83	14.7924
=bbccc	chr16:28222745-28222997(-)$1	252	91	97	10.5471
FFFFF{	chr16:28223001-28223293(-)$1	292	34	40	10.7358
F:ffff	chr20:39803957-39804213(+)$1	256	114	120	10.5471
f[dddd	chr19:38571987-38572294(+)$1	307	281	287	14.7924
fffffx	chr1:1596547-1596806(-)$1	259	102	108	14.7924
bfffff	chrX:18911299-18911540(-)$1	241	63	69	10.7358
dddd""	chr12:122626566-122626835(+)$1	269	104	110	12.3396
fffffm	chr1:226033438-226033685(-)$1	247	211	217	12.3396
DDDDDD	chr15:93568449-93568697(+)$1	248	207	213	14.7924
4444bb	chr6:43737933-43738174(+)$1	241	57	63	10.7358
oooobb	chr16:31501912-31502164(-)$1	252	120	126	14.7924
eeeeei	chr2:234378606-234378864(+)$1	258	220	226	14.7924
bb]iii	chr9:117031421-117031625(+)$1	204	114	120	11.6792
JJJJJJ	chr9:139371928-139372179(-)$1	251	149	155	11.6792
e]eeee	chr2:234379089-234379312(+)$1	223	36	42	11.6792
MMMMDD	chr17:36884635-36884912(+)$1	277	101	107	10.5471
4fffff	chr16:2147358-2147604(-)$1	246	44	50	14.7924
fff!!c	chr16:46964820-46965111(+)$1	291	172	178	11.6792
lllfff	chr1:22856310-22856549(+)$1	239	178	184	11.3962
======	chr20:61598925-61599155(+)$1	230	102	108	14.7924
======	chr16:2649021-2649281(+)$1	260	50	56	12.3396
22eeee	chr3:132277146-132277402(-)$1	256	128	134	14.7924
FFF{DD	chr5:78809363-78809635(-)$1	272	59	65	10.7358
:::ddd	chr17:2283312-2283530(+)$1	218	93	99	14.7924
gggggg	chr3:184102773-184103093(+)$1	320	149	155	11.6792
gg[a[f	chrX:153587649-153587872(-)$1	223	52	58	14.7924
gggggg	chr16:1819436-1819696(+)$1	260	150	156	14.7924
fff!!a	chr19:10802238-10802478(+)$1	240	91	97	11.3018
dddd[d	chr17:44249015-44249305(-)$1	290	226	232	11.3962
fmmmmf	chr6:41752974-41753285(+)$1	311	197	203	12.3396
F:dddd	chr4:155511742-155511986(-)$1	244	186	192	14.7924
2ddddc	chr4:1809015-1809335(+)$1	320	277	283	14.7924
3ggggg	chr20:39801153-39801384(+)$1	231	107	113	12.3396
22ccc4	chr20:25206090-25206369(+)$1	279	76	82	11.6792
hhhhhh	chr15:28510663-28510923(-)$1	260	240	246	14.7924

#DB
))...)	chr6:159053288-159053517(+)$1	1	119	125	12.3396
((((((	chr16:1819635-1819884(+)$1	1	189	195	12.3396
(.((((	chr6:32942138-32942387(+)$1	1	134	140	11.6792
.(((((	chr16:28847500-28847728(+)$1	1	154	160	14.7924
...(((	chr17:7322537-7322771(+)$1	1	41	47	10.7358
)).)))	chr20:57253717-57253965(+)$1	1	209	215	14.7924
((((((	chr15:34672629-34672891(-)$1	1	32	38	11.6792
...)))	chr7:151932798-151933050(-)$1	1	93	99	12.3396
(((((.	chr20:61919948-61920224(+)$1	1	53	59	12.3396
)).)))	chr12:80083947-80084207(-)$1	1	140	146	14.7924
((((((	chr9:139098822-139099127(-)$1	1	108	114	11.6792
.).)))	chr2:62932900-62933158(+)$1	1	89	95	14.7924
..((((	chr9:117032907-117033148(+)$1	1	125	131	12.3396
)..(((	chr15:34819062-34819308(-)$1	1	123	129	12.3396
...(((	chr15:34672773-34673030(-)$1	1	66	72	12.3396
((((.(	chr18:13055941-13056203(+)$1	1	155	161	11.6792
((.(.(	chr12:56632202-56632444(-)$1	1	84	90	10.5471
...)))	chr16:84212121-84212380(-)$1	1	77	83	14.7924
))))))	chr16:28222745-28222997(-)$1	1	91	97	10.5471
(((((.	chr16:28223001-28223293(-)$1	1	34	40	10.7358
(.((((	chr20:39803957-39804213(+)$1	1	114	120	10.5471
(.((((	chr19:38571987-38572294(+)$1	1	281	287	14.7924
(((((.	chr1:1596547-1596806(-)$1	1	102	108	14.7924
))))))	chrX:18911299-18911540(-)$1	1	63	69	10.7358
((((..	chr12:122626566-122626835(+)$1	1	104	110	12.3396
(((((.	chr1:226033438-226033685(-)$1	1	211	217	12.3396
))))))	chr15:93568449-93568697(+)$1	1	207	213	14.7924
....))	chr6:43737933-43738174(+)$1	1	57	63	10.7358
....))	chr16:31501912-31502164(-)$1	1	120	126	14.7924
)))))(	chr2:234378606-234378864(+)$1	1	220	226	14.7924
)).)))	chr9:117031421-117031625(+)$1	1	114	120	11.6792
))))))	chr9:139371928-139372179(-)$1	1	149	155	11.6792
).))))	chr2:234379089-234379312(+)$1	1	36	42	11.6792
....((	chr17:36884635-36884912(+)$1	1	101	107	10.5471
.)))))	chr16:2147358-2147604(-)$1	1	44	50	14.7924
(((..(	chr16:46964820-46965111(+)$1	1	172	178	11.6792
...)))	chr1:22856310-22856549(+)$1	1	178	184	11.3962
((((((	chr20:61598925-61599155(+)$1	1	102	108	14.7924
))))))	chr16:2649021-2649281(+)$1	1	50	56	12.3396
..))))	chr3:132277146-132277402(-)$1	1	128	134	14.7924
(((.((	chr5:78809363-78809635(-)$1	1	59	65	10.7358
...(((	chr17:2283312-2283530(+)$1	1	93	99	14.7924
((((((	chr3:184102773-184103093(+)$1	1	149	155	11.6792
((.(.(	chrX:153587649-153587872(-)$1	1	52	58	14.7924
))))((	chr16:1819436-1819696(+)$1	1	150	156	14.7924
(((..(	chr19:10802238-10802478(+)$1	1	91	97	11.3018
((((.(	chr17:44249015-44249305(-)$1	1	226	232	11.3962
(....)	chr6:41752974-41753285(+)$1	1	197	203	12.3396
).((((	chr4:155511742-155511986(-)$1	1	186	192	14.7924
.)))))	chr4:1809015-1809335(+)$1	1	277	283	14.7924
.)))))	chr20:39801153-39801384(+)$1	1	107	113	12.3396
..))).	chr20:25206090-25206369(+)$1	1	76	82	11.6792
))))))	chr15:28510663-28510923(-)$1	1	240	246	14.7924

#PSSM
G : 0.81	C : 0.18	
U : 0.90	G : 0.09	
G : 0.99	
G : 0.99	
G : 0.71	C : 0.22	U : 0.03	A : 0.01	
C : 0.92	U : 0.07	

#score	675.8867924528304
#seq	53
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_transcript_m1_run2.nuc.txt

#NT
UGCUG	chrX:139006259-139006473(-)$1	214	143	148	15.0000
ugcug	chr22:42298648-42298932(+)$1	284	45	50	15.0000
UGCUG	chrX:53583265-53583498(-)$1	233	181	186	15.0000
UGCUG	chr10:65132626-65132861(-)$1	235	150	155	15.0000
UGCUG	chr5:167987823-167988056(-)$1	233	101	106	15.0000
ugcug	chr7:22627622-22627872(-)$1	250	113	118	15.0000
UGCUG	chr16:2056062-2056306(-)$1	244	211	216	15.0000
UGCUG	chr7:1062205-1062493(-)$1	288	208	213	15.0000
UGCUG	chr13:92003378-92003581(+)$1	203	117	122	15.0000
ugcug	chr20:50069348-50069599(-)$1	251	134	139	15.0000
UGCUG	chr13:92003405-92003624(+)$1	219	90	95	15.0000
UGCUG	chr3:38012701-38012959(+)$1	258	175	180	15.0000
UGCUG	chr9:139565743-139566048(+)$1	305	18	23	15.0000
UGCUG	chr13:113918551-113918803(+)$1	252	212	217	15.0000
UGCUG	chr5:167987807-167988017(-)$1	210	62	67	15.0000
UGCUG	chr17:11985243-11985483(+)$1	240	37	42	15.0000
UGCUG	chr7:99691004-99691255(-)$1	251	21	26	15.0000
UGCUG	chr19:46178126-46178391(+)$1	265	255	260	15.0000
UGCUG	chr1:2122055-2122299(-)$1	244	233	238	15.0000
UGCUG	chr21:36219139-36219390(-)$1	251	30	35	15.0000
UGCUG	chr9:111808370-111808601(-)$1	231	127	132	15.0000
UGCUG	chr22:42296695-42296913(+)$1	218	53	58	15.0000
UGCUG	chr22:46508411-46508701(+)$1	290	1	6	15.0000
UGCUG	chr9:101553855-101554137(-)$1	282	7	12	15.0000
ugcug	chr7:126990917-126991166(-)$1	249	123	128	15.0000
UGCUG	chr9:96938600-96938812(+)$1	212	125	130	15.0000
UGCUG	chrX:151126857-151127085(-)$1	228	137	142	15.0000
UGCUG	chr17:19248051-19248278(-)$1	227	80	85	15.0000
UGCUG	chr17:56409607-56409840(-)$1	233	30	35	15.0000
UGCUG	chr13:92003502-92003720(+)$1	218	94	99	15.0000
UGCUG	chr9:4859808-4860074(+)$1	266	104	109	15.0000
UGCUG	chr15:65578581-65578821(-)$1	240	106	111	15.0000
ugcug	chr13:50621381-50621626(-)$1	245	48	53	15.0000
UGCUG	chr15:29348054-29348350(+)$1	296	243	248	15.0000
UGCUG	chr7:130561408-130561631(-)$1	223	0	5	15.0000
UGCUG	chr22:22037032-22037279(+)$1	247	60	65	15.0000
UGCUG	chr17:56408631-56408855(-)$1	224	21	26	15.0000
UGCUG	chr22:20020228-20020479(+)$1	251	245	250	15.0000
UGCUG	chr10:21785397-21785659(-)$1	262	109	114	15.0000
UGCUG	chr9:96939414-96939636(+)$1	222	65	70	15.0000
UGCUG	chr6:86352571-86352821(-)$1	250	172	177	15.0000
UGCUG	chr13:113918603-113918862(+)$1	259	160	165	15.0000
UGCUG	chr17:56408368-56408579(-)$1	211	7	12	15.0000
UGCUG	chr14:105628777-105629116(-)$1	339	142	147	15.0000
UGCUG	chr9:139564393-139564643(+)$1	250	137	142	15.0000
UGCUG	chr6:27094956-27095164(-)$1	208	68	73	15.0000
UGCUG	chr9:96941147-96941372(+)$1	225	39	44	15.0000
UGCUG	chr13:50623163-50623373(-)$1	210	98	103	15.0000
UGCUG	chr19:52196441-52196679(+)$1	238	171	176	15.0000

#otherMatches

#Struct PSSM
]iiii	chr9:139566237-139566472(+)$1	235	153	158	15.0000
d]===	chrX:139006259-139006473(-)$1	214	143	148	15.0000
{CCCL	chr22:42298648-42298932(+)$1	284	45	50	15.0000
:bb[a	chrX:53583265-53583498(-)$1	233	181	186	15.0000
mmmme	chr10:65132626-65132861(-)$1	235	150	155	15.0000
=====	chr5:167987823-167988056(-)$1	233	101	106	15.0000
fffff	chr7:22627622-22627872(-)$1	250	113	118	15.0000
:DDDD	chr16:2056062-2056306(-)$1	244	211	216	15.0000
ellle	chr7:1062205-1062493(-)$1	288	208	213	15.0000
vdddd	chr13:92003378-92003581(+)$1	203	117	122	15.0000
h]ccc	chr20:50069348-50069599(-)$1	251	134	139	15.0000
vdddd	chr13:92003405-92003624(+)$1	219	90	95	15.0000
eeIII	chr3:38012701-38012959(+)$1	258	175	180	15.0000
hhhhh	chr9:139565743-139566048(+)$1	305	18	23	15.0000
ddd:g	chr13:113918551-113918803(+)$1	252	212	217	15.0000
=====	chr5:167987807-167988017(-)$1	210	62	67	15.0000
[dddd	chr17:11985243-11985483(+)$1	240	37	42	15.0000
:bb##	chr7:99691004-99691255(-)$1	251	21	26	15.0000
BB}FF	chr19:46178126-46178391(+)$1	265	255	260	15.0000
GGGGB	chr1:2122055-2122299(-)$1	244	233	238	15.0000
c]eee	chr21:36219139-36219390(-)$1	251	30	35	15.0000
=====	chr9:111808370-111808601(-)$1	231	127	132	15.0000
mmmmb	chr22:42296695-42296913(+)$1	218	53	58	15.0000
:ccc[	chr22:46508411-46508701(+)$1	290	1	6	15.0000
{DDDD	chr9:101553855-101554137(-)$1	282	7	12	15.0000
cccII	chr7:126990917-126991166(-)$1	249	123	128	15.0000
bb888	chr9:96938600-96938812(+)$1	212	125	130	15.0000
EEEEE	chrX:151126857-151127085(-)$1	228	137	142	15.0000
FBB}I	chr17:19248051-19248278(-)$1	227	80	85	15.0000
Hbb[c	chr17:56409607-56409840(-)$1	233	30	35	15.0000
=====	chr13:92003502-92003720(+)$1	218	94	99	15.0000
:bboo	chr9:4859808-4860074(+)$1	266	104	109	15.0000
nbb]a	chr15:65578581-65578821(-)$1	240	106	111	15.0000
[cccn	chr13:50621381-50621626(-)$1	245	48	53	15.0000
fffff	chr15:29348054-29348350(+)$1	296	243	248	15.0000
CCCBB	chr7:130561408-130561631(-)$1	223	0	5	15.0000
[ccc=	chr22:22037032-22037279(+)$1	247	60	65	15.0000
a[eee	chr17:56408631-56408855(-)$1	224	21	26	15.0000
ZCCC:	chr22:20020228-20020479(+)$1	251	245	250	15.0000
bb[ee	chr10:21785397-21785659(-)$1	262	109	114	15.0000
d!!a[	chr9:96939414-96939636(+)$1	222	65	70	15.0000
ccc]c	chr6:86352571-86352821(-)$1	250	172	177	15.0000
ddd]c	chr13:113918603-113918862(+)$1	259	160	165	15.0000
:::::	chr17:56408368-56408579(-)$1	211	7	12	15.0000
ccc!!	chr14:105628777-105629116(-)$1	339	142	147	15.0000
4gggg	chr9:139564393-139564643(+)$1	250	137	142	15.0000
=[bb[	chr6:27094956-27095164(-)$1	208	68	73	15.0000
d]bbe	chr9:96941147-96941372(+)$1	225	39	44	15.0000
hhhhh	chr13:50623163-50623373(-)$1	210	98	103	15.0000
$$$$b	chr19:52196441-52196679(+)$1	238	171	176	15.0000

#DB
.))))	chr9:139566237-139566472(+)$1	1	153	158	15.0000
).)))	chrX:139006259-139006473(-)$1	1	143	148	15.0000
.(((.	chr22:42298648-42298932(+)$1	1	45	50	15.0000
.((.(	chrX:53583265-53583498(-)$1	1	181	186	15.0000
....)	chr10:65132626-65132861(-)$1	1	150	155	15.0000
(((((	chr5:167987823-167988056(-)$1	1	101	106	15.0000
(((((	chr7:22627622-22627872(-)$1	1	113	118	15.0000
.))))	chr16:2056062-2056306(-)$1	1	211	216	15.0000
(...)	chr7:1062205-1062493(-)$1	1	208	213	15.0000
.))))	chr13:92003378-92003581(+)$1	1	117	122	15.0000
).)))	chr20:50069348-50069599(-)$1	1	134	139	15.0000
.))))	chr13:92003405-92003624(+)$1	1	90	95	15.0000
)))))	chr3:38012701-38012959(+)$1	1	175	180	15.0000
(((((	chr9:139565743-139566048(+)$1	1	18	23	15.0000
))).(	chr13:113918551-113918803(+)$1	1	212	217	15.0000
(((((	chr5:167987807-167988017(-)$1	1	62	67	15.0000
.((((	chr17:11985243-11985483(+)$1	1	37	42	15.0000
.((..	chr7:99691004-99691255(-)$1	1	21	26	15.0000
)).))	chr19:46178126-46178391(+)$1	1	255	260	15.0000
)))))	chr1:2122055-2122299(-)$1	1	233	238	15.0000
).)))	chr21:36219139-36219390(-)$1	1	30	35	15.0000
(((((	chr9:111808370-111808601(-)$1	1	127	132	15.0000
....)	chr22:42296695-42296913(+)$1	1	53	58	15.0000
.(((.	chr22:46508411-46508701(+)$1	1	1	6	15.0000
.((((	chr9:101553855-101554137(-)$1	1	7	12	15.0000
)))))	chr7:126990917-126991166(-)$1	1	123	128	15.0000
))...	chr9:96938600-96938812(+)$1	1	125	130	15.0000
)))))	chrX:151126857-151127085(-)$1	1	137	142	15.0000
))).)	chr17:19248051-19248278(-)$1	1	80	85	15.0000
(((.(	chr17:56409607-56409840(-)$1	1	30	35	15.0000
(((((	chr13:92003502-92003720(+)$1	1	94	99	15.0000
.((..	chr9:4859808-4860074(+)$1	1	104	109	15.0000
.)).)	chr15:65578581-65578821(-)$1	1	106	111	15.0000
.(((.	chr13:50621381-50621626(-)$1	1	48	53	15.0000
(((((	chr15:29348054-29348350(+)$1	1	243	248	15.0000
(((((	chr7:130561408-130561631(-)$1	1	0	5	15.0000
.((((	chr22:22037032-22037279(+)$1	1	60	65	15.0000
(.(((	chr17:56408631-56408855(-)$1	1	21	26	15.0000
.))).	chr22:20020228-20020479(+)$1	1	245	250	15.0000
((.((	chr10:21785397-21785659(-)$1	1	109	114	15.0000
(..(.	chr9:96939414-96939636(+)$1	1	65	70	15.0000
))).)	chr6:86352571-86352821(-)$1	1	172	177	15.0000
))).)	chr13:113918603-113918862(+)$1	1	160	165	15.0000
.....	chr17:56408368-56408579(-)$1	1	7	12	15.0000
(((..	chr14:105628777-105629116(-)$1	1	142	147	15.0000
.))))	chr9:139564393-139564643(+)$1	1	137	142	15.0000
(.((.	chr6:27094956-27095164(-)$1	1	68	73	15.0000
).))(	chr9:96941147-96941372(+)$1	1	39	44	15.0000
)))))	chr13:50623163-50623373(-)$1	1	98	103	15.0000
....(	chr19:52196441-52196679(+)$1	1	171	176	15.0000

#PSSM
U : 0.90	u : 0.10	
G : 0.90	g : 0.10	
C : 0.90	c : 0.10	
U : 0.90	u : 0.10	
G : 0.90	g : 0.10	

#score	750.0000000000001
#seq	50
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_UTR_m1_run2.nuc.txt

#NT
GAAG	chr10:129897193-129897428(-)$1	235	91	95	11.9999
GAAG	chr6:56362554-56362778(-)$1	224	14	18	11.9999
GAAG	chr1:93621755-93622064(-)$1	309	34	38	11.9999
GAAG	chr7:11101490-11101789(+)$1	299	119	123	11.9999
GAAG	chr2:109101997-109102295(+)$1	298	17	21	11.9999
GAAG	chr19:5657178-5657454(+)$1	276	111	115	11.9999
GAAG	chr16:70588854-70589119(+)$1	265	152	156	11.9999
GAAG	chr12:56493572-56493892(+)$1	320	105	109	11.9999
GAAG	chr3:123345550-123345853(-)$1	303	158	162	11.9999
GAAG	chr5:77003966-77004264(-)$1	298	138	142	11.9999
GAAG	chr6:56436848-56437148(-)$1	300	36	40	11.9999
GAAG	chr11:34167614-34167941(+)$1	327	28	32	11.9999
GAAG	chr4:40144218-40144502(+)$1	284	6	10	11.9999
GAAG	chr1:27105853-27106107(+)$1	254	172	176	11.9999
GAAG	chr1:24383477-24383794(-)$1	317	40	44	11.9999
GAAG	chr6:34664394-34664673(-)$1	279	193	197	11.9999
GAAG	chr9:134454779-134455017(-)$1	238	119	123	11.9999
GAAG	chr3:121410741-121411020(-)$1	279	85	89	11.9999
GAAG	chr16:89348021-89348298(-)$1	277	58	62	11.9999
GAAG	chrX:153581316-153581563(-)$1	247	37	41	11.9999
GAAG	chr3:184052578-184052917(+)$1	339	88	92	11.9999
GAAG	chr21:34931791-34932030(+)$1	239	191	195	11.9999
GAAG	chr6:56380146-56380389(-)$1	243	37	41	11.9999
GAAG	chr14:31588918-31589163(-)$1	245	91	95	11.9999
GAAG	chr3:121409475-121409720(-)$1	245	102	106	11.9999
GAAG	chr21:34945641-34945861(+)$1	220	44	48	11.9999
GAAG	chr7:158456774-158457068(-)$1	294	36	40	11.9999
GAAG	chr16:89348967-89349255(-)$1	288	13	17	11.9999
GAAG	chr5:138266183-138266443(+)$1	260	13	17	11.9999
GAAG	chr2:11780508-11780738(+)$1	230	30	34	11.9999
GAAG	chr16:58576092-58576326(-)$1	234	42	46	11.9999
GAAG	chr9:127998702-127998966(-)$1	264	0	4	11.9999
GAAG	chr9:134340179-134340427(+)$1	248	41	45	11.9999
GAAG	chr9:134353773-134354077(+)$1	304	152	156	11.9999
GAAG	chr5:151174943-151175212(+)$1	269	101	105	11.9999
GAAG	chr6:32945856-32946187(+)$1	331	132	136	11.9999
GAAG	chr7:74131113-74131376(+)$1	263	100	104	11.9999
GAAG	chr18:12329450-12329805(-)$1	355	47	51	11.9999
GAAG	chr2:170668076-170668376(+)$1	300	121	125	11.9999
GAAG	chr17:78367274-78367508(+)$1	234	61	65	11.9999
GAAG	chr6:56418322-56418554(-)$1	232	196	200	11.9999
GAAG	chr16:89348150-89348436(-)$1	286	76	80	11.9999
GAAG	chrX:147013891-147014155(+)$1	264	100	104	11.9999
GAAG	chr2:153512678-153513012(-)$1	334	0	4	11.9999
GAAG	chr1:39790267-39790505(+)$1	238	19	23	11.9999
GAAG	chr3:121414090-121414325(-)$1	235	47	51	11.9999
GAAG	chr17:27413854-27414148(-)$1	294	41	45	11.9999
GAAG	chr4:39905614-39905895(-)$1	281	9	13	11.9999
GAAG	chr9:79933170-79933545(+)$1	375	52	56	11.9999
GAAG	chr2:61415952-61416213(-)$1	261	144	148	11.9999
GAAG	chr3:184052717-184053016(+)$1	299	117	121	11.9999
GAAG	chr13:77750562-77750852(-)$1	290	281	285	11.9999
GAAG	chr15:93547746-93548005(+)$1	259	170	174	11.9999
GAAG	chr2:61723950-61724214(-)$1	264	107	111	11.9999
GAAG	chr3:184043194-184043453(+)$1	259	145	149	11.9999
GAAG	chr16:89348456-89348725(-)$1	269	12	16	11.9999
GAAG	chr5:140905529-140905839(-)$1	310	119	123	11.9999
GAAG	chr22:29696008-29696275(+)$1	267	26	30	11.9999
gaag	chr9:139734720-139734986(+)$1	266	53	57	11.9999
GAAG	chr3:25650688-25650936(-)$1	248	156	160	11.9999
GAAG	chrX:41056518-41056777(+)$1	259	131	135	11.9999
GAAG	chr3:184040363-184040607(+)$1	244	64	68	11.9999
gaag	chr17:4792845-4793072(+)$1	227	122	126	11.9999
GAAG	chrX:153582225-153582489(-)$1	264	78	82	11.9999
GAAG	chr17:62532623-62532961(+)$1	338	114	118	11.9999
GAAG	chr9:134353031-134353305(+)$1	274	205	209	11.9999
gaag	chr14:73577444-73577695(+)$1	251	151	155	11.9999
GAAG	chr11:57077134-57077372(-)$1	238	46	50	11.9999
GAAG	chr2:232327842-232328099(-)$1	257	126	130	11.9999
GAAG	chr2:153533863-153534090(-)$1	227	115	119	11.9999
GAAG	chr2:71653702-71653989(+)$1	287	36	40	11.9999
GAAG	chr20:34090336-34090583(+)$1	247	24	28	11.9999
GAAG	chr19:8530108-8530410(+)$1	302	259	263	11.9999
GAAG	chr1:154145282-154145556(-)$1	274	126	130	11.9999
GAAG	chr6:56342042-56342270(-)$1	228	2	6	11.9999
GAAG	chr3:184049160-184049415(+)$1	255	98	102	11.9999
GAAG	chr5:139905658-139905927(+)$1	269	67	71	11.9999
GAAG	chr7:151860656-151860916(-)$1	260	41	45	11.9999
GAAG	chr3:123419174-123419446(-)$1	272	8	12	11.9999
GAAG	chr17:48823798-48824166(+)$1	368	74	78	11.9999
GAAG	chr17:27420244-27420541(-)$1	297	31	35	11.9999
GAAG	chr3:123366035-123366374(-)$1	339	160	164	11.9999
GAAG	chr2:54114421-54114700(-)$1	279	220	224	11.9999
GAAG	chr16:89350838-89351078(-)$1	240	54	58	11.9999
GAAG	chr2:8910811-8911056(-)$1	245	204	208	11.9999
GAAG	chr6:56422027-56422278(-)$1	251	15	19	11.9999
GAAG	chr16:89383304-89383575(-)$1	271	85	89	11.9999
GAAG	chr2:216213718-216213966(+)$1	248	101	105	11.9999
GAAG	chr16:69681321-69681590(+)$1	269	61	65	11.9999
GAAG	chr2:232577052-232577260(+)$1	208	65	69	11.9999
GAAG	chr11:64536800-64537124(-)$1	324	55	59	11.9999
GAAG	chr3:184043055-184043261(+)$1	206	51	55	11.9999
GAAG	chr3:25650958-25651203(-)$1	245	39	43	11.9999

#otherMatches

#Struct PSSM
i22d	chr11:129992097-129992351(+)$1	254	32	36	11.9999
ddd4	chr10:129897193-129897428(-)$1	235	91	95	11.9999
G:::	chr6:56362554-56362778(-)$1	224	14	18	11.9999
eeee	chr1:93621755-93622064(-)$1	309	34	38	11.9999
ggg2	chr7:11101490-11101789(+)$1	299	119	123	11.9999
ee[d	chr2:109101997-109102295(+)$1	298	17	21	11.9999
333g	chr19:5657178-5657454(+)$1	276	111	115	11.9999
ffff	chr16:70588854-70589119(+)$1	265	152	156	11.9999
d"""	chr12:56493572-56493892(+)$1	320	105	109	11.9999
444a	chr3:123345550-123345853(-)$1	303	158	162	11.9999
ssss	chr5:77003966-77004264(-)$1	298	138	142	11.9999
dd""	chr6:56436848-56437148(-)$1	300	36	40	11.9999
B{FF	chr11:34167614-34167941(+)$1	327	28	32	11.9999
GGGG	chr4:40144218-40144502(+)$1	284	6	10	11.9999
:::b	chr1:27105853-27106107(+)$1	254	172	176	11.9999
::::	chr1:24383477-24383794(-)$1	317	40	44	11.9999
"""c	chr6:34664394-34664673(-)$1	279	193	197	11.9999
FF::	chr9:134454779-134455017(-)$1	238	119	123	11.9999
CC{G	chr3:121410741-121411020(-)$1	279	85	89	11.9999
oooo	chr16:89348021-89348298(-)$1	277	58	62	11.9999
KKBB	chrX:153581316-153581563(-)$1	247	37	41	11.9999
c22e	chr3:184052578-184052917(+)$1	339	88	92	11.9999
77bb	chr21:34931791-34932030(+)$1	239	191	195	11.9999
vvdd	chr6:56380146-56380389(-)$1	243	37	41	11.9999
ee$$	chr14:31588918-31589163(-)$1	245	91	95	11.9999
ffff	chr3:121409475-121409720(-)$1	245	102	106	11.9999
GGGG	chr21:34945641-34945861(+)$1	220	44	48	11.9999
c22d	chr7:158456774-158457068(-)$1	294	36	40	11.9999
:::E	chr16:89348967-89349255(-)$1	288	13	17	11.9999
ddll	chr5:138266183-138266443(+)$1	260	13	17	11.9999
gggg	chr2:11780508-11780738(+)$1	230	30	34	11.9999
]ddd	chr16:58576092-58576326(-)$1	234	42	46	11.9999
:::b	chr9:127998702-127998966(-)$1	264	0	4	11.9999
cccn	chr9:134340179-134340427(+)$1	248	41	45	11.9999
###f	chr9:134353773-134354077(+)$1	304	152	156	11.9999
hhhh	chr5:151174943-151175212(+)$1	269	101	105	11.9999
EEEE	chr6:32945856-32946187(+)$1	331	132	136	11.9999
eeep	chr7:74131113-74131376(+)$1	263	100	104	11.9999
eeee	chr18:12329450-12329805(-)$1	355	47	51	11.9999
::::	chr2:170668076-170668376(+)$1	300	121	125	11.9999
ggpp	chr17:78367274-78367508(+)$1	234	61	65	11.9999
FFFF	chr6:56418322-56418554(-)$1	232	196	200	11.9999
dddp	chr16:89348150-89348436(-)$1	286	76	80	11.9999
gggb	chrX:147013891-147014155(+)$1	264	100	104	11.9999
====	chr2:153512678-153513012(-)$1	334	0	4	11.9999
ggff	chr1:39790267-39790505(+)$1	238	19	23	11.9999
gvvv	chr3:121414090-121414325(-)$1	235	47	51	11.9999
b!!e	chr17:27413854-27414148(-)$1	294	41	45	11.9999
####	chr4:39905614-39905895(-)$1	281	9	13	11.9999
ffff	chr9:79933170-79933545(+)$1	375	52	56	11.9999
nnnb	chr2:61415952-61416213(-)$1	261	144	148	11.9999
::BB	chr3:184052717-184053016(+)$1	299	117	121	11.9999
::::	chr13:77750562-77750852(-)$1	290	281	285	11.9999
eppp	chr15:93547746-93548005(+)$1	259	170	174	11.9999
ccoo	chr2:61723950-61724214(-)$1	264	107	111	11.9999
oooo	chr3:184043194-184043453(+)$1	259	145	149	11.9999
:::D	chr16:89348456-89348725(-)$1	269	12	16	11.9999
bb]b	chr5:140905529-140905839(-)$1	310	119	123	11.9999
hhhh	chr22:29696008-29696275(+)$1	267	26	30	11.9999
++++	chr9:139734720-139734986(+)$1	266	53	57	11.9999
ee::	chr3:25650688-25650936(-)$1	248	156	160	11.9999
gggg	chrX:41056518-41056777(+)$1	259	131	135	11.9999
oooo	chr3:184040363-184040607(+)$1	244	64	68	11.9999
mmme	chr17:4792845-4793072(+)$1	227	122	126	11.9999
gggg	chrX:153582225-153582489(-)$1	264	78	82	11.9999
hhhn	chr17:62532623-62532961(+)$1	338	114	118	11.9999
"""d	chr9:134353031-134353305(+)$1	274	205	209	11.9999
mmmb	chr14:73577444-73577695(+)$1	251	151	155	11.9999
!!ee	chr11:57077134-57077372(-)$1	238	46	50	11.9999
b:::	chr2:232327842-232328099(-)$1	257	126	130	11.9999
eehh	chr2:153533863-153534090(-)$1	227	115	119	11.9999
((((	chr2:71653702-71653989(+)$1	287	36	40	11.9999
####	chr20:34090336-34090583(+)$1	247	24	28	11.9999
CJJJ	chr19:8530108-8530410(+)$1	302	259	263	11.9999
cc!!	chr1:154145282-154145556(-)$1	274	126	130	11.9999
::::	chr6:56342042-56342270(-)$1	228	2	6	11.9999
ooof	chr3:184049160-184049415(+)$1	255	98	102	11.9999
::::	chr5:139905658-139905927(+)$1	269	67	71	11.9999
bboo	chr7:151860656-151860916(-)$1	260	41	45	11.9999
:::d	chr3:123419174-123419446(-)$1	272	8	12	11.9999
eeee	chr17:48823798-48824166(+)$1	368	74	78	11.9999
rrrc	chr17:27420244-27420541(-)$1	297	31	35	11.9999
::::	chr3:123366035-123366374(-)$1	339	160	164	11.9999
dddm	chr2:54114421-54114700(-)$1	279	220	224	11.9999
D:::	chr16:89350838-89351078(-)$1	240	54	58	11.9999
hhh"	chr2:8910811-8911056(-)$1	245	204	208	11.9999
ddpp	chr6:56422027-56422278(-)$1	251	15	19	11.9999
dddd	chr16:89383304-89383575(-)$1	271	85	89	11.9999
dddd	chr2:216213718-216213966(+)$1	248	101	105	11.9999
FFF:	chr16:69681321-69681590(+)$1	269	61	65	11.9999
qqa]	chr2:232577052-232577260(+)$1	208	65	69	11.9999
22cc	chr11:64536800-64537124(-)$1	324	55	59	11.9999
d!!b	chr3:184043055-184043261(+)$1	206	51	55	11.9999
d[bb	chr3:25650958-25651203(-)$1	245	39	43	11.9999

#DB
)..)	chr11:129992097-129992351(+)$1	1	32	36	11.9999
))).	chr10:129897193-129897428(-)$1	1	91	95	11.9999
(...	chr6:56362554-56362778(-)$1	1	14	18	11.9999
))))	chr1:93621755-93622064(-)$1	1	34	38	11.9999
))).	chr7:11101490-11101789(+)$1	1	119	123	11.9999
((.(	chr2:109101997-109102295(+)$1	1	17	21	11.9999
...)	chr19:5657178-5657454(+)$1	1	111	115	11.9999
))))	chr16:70588854-70589119(+)$1	1	152	156	11.9999
(...	chr12:56493572-56493892(+)$1	1	105	109	11.9999
...)	chr3:123345550-123345853(-)$1	1	158	162	11.9999
....	chr5:77003966-77004264(-)$1	1	138	142	11.9999
((..	chr6:56436848-56437148(-)$1	1	36	40	11.9999
(.((	chr11:34167614-34167941(+)$1	1	28	32	11.9999
((((	chr4:40144218-40144502(+)$1	1	6	10	11.9999
...(	chr1:27105853-27106107(+)$1	1	172	176	11.9999
....	chr1:24383477-24383794(-)$1	1	40	44	11.9999
...(	chr6:34664394-34664673(-)$1	1	193	197	11.9999
((..	chr9:134454779-134455017(-)$1	1	119	123	11.9999
((.(	chr3:121410741-121411020(-)$1	1	85	89	11.9999
....	chr16:89348021-89348298(-)$1	1	58	62	11.9999
..((	chrX:153581316-153581563(-)$1	1	37	41	11.9999
)..)	chr3:184052578-184052917(+)$1	1	88	92	11.9999
..))	chr21:34931791-34932030(+)$1	1	191	195	11.9999
..))	chr6:56380146-56380389(-)$1	1	37	41	11.9999
((..	chr14:31588918-31589163(-)$1	1	91	95	11.9999
((((	chr3:121409475-121409720(-)$1	1	102	106	11.9999
((((	chr21:34945641-34945861(+)$1	1	44	48	11.9999
)..)	chr7:158456774-158457068(-)$1	1	36	40	11.9999
...(	chr16:89348967-89349255(-)$1	1	13	17	11.9999
((..	chr5:138266183-138266443(+)$1	1	13	17	11.9999
((((	chr2:11780508-11780738(+)$1	1	30	34	11.9999
.)))	chr16:58576092-58576326(-)$1	1	42	46	11.9999
...(	chr9:127998702-127998966(-)$1	1	0	4	11.9999
(((.	chr9:134340179-134340427(+)$1	1	41	45	11.9999
...(	chr9:134353773-134354077(+)$1	1	152	156	11.9999
))))	chr5:151174943-151175212(+)$1	1	101	105	11.9999
((((	chr6:32945856-32946187(+)$1	1	132	136	11.9999
(((.	chr7:74131113-74131376(+)$1	1	100	104	11.9999
))))	chr18:12329450-12329805(-)$1	1	47	51	11.9999
....	chr2:170668076-170668376(+)$1	1	121	125	11.9999
((..	chr17:78367274-78367508(+)$1	1	61	65	11.9999
))))	chr6:56418322-56418554(-)$1	1	196	200	11.9999
(((.	chr16:89348150-89348436(-)$1	1	76	80	11.9999
))))	chrX:147013891-147014155(+)$1	1	100	104	11.9999
((((	chr2:153512678-153513012(-)$1	1	0	4	11.9999
((((	chr1:39790267-39790505(+)$1	1	19	23	11.9999
(...	chr3:121414090-121414325(-)$1	1	47	51	11.9999
(..(	chr17:27413854-27414148(-)$1	1	41	45	11.9999
....	chr4:39905614-39905895(-)$1	1	9	13	11.9999
((((	chr9:79933170-79933545(+)$1	1	52	56	11.9999
...)	chr2:61415952-61416213(-)$1	1	144	148	11.9999
..((	chr3:184052717-184053016(+)$1	1	117	121	11.9999
....	chr13:77750562-77750852(-)$1	1	281	285	11.9999
(...	chr15:93547746-93548005(+)$1	1	170	174	11.9999
((..	chr2:61723950-61724214(-)$1	1	107	111	11.9999
....	chr3:184043194-184043453(+)$1	1	145	149	11.9999
...(	chr16:89348456-89348725(-)$1	1	12	16	11.9999
)).)	chr5:140905529-140905839(-)$1	1	119	123	11.9999
((((	chr22:29696008-29696275(+)$1	1	26	30	11.9999
....	chr9:139734720-139734986(+)$1	1	53	57	11.9999
))..	chr3:25650688-25650936(-)$1	1	156	160	11.9999
))))	chrX:41056518-41056777(+)$1	1	131	135	11.9999
....	chr3:184040363-184040607(+)$1	1	64	68	11.9999
...)	chr17:4792845-4793072(+)$1	1	122	126	11.9999
))))	chrX:153582225-153582489(-)$1	1	78	82	11.9999
(((.	chr17:62532623-62532961(+)$1	1	114	118	11.9999
...(	chr9:134353031-134353305(+)$1	1	205	209	11.9999
...)	chr14:73577444-73577695(+)$1	1	151	155	11.9999
..((	chr11:57077134-57077372(-)$1	1	46	50	11.9999
)...	chr2:232327842-232328099(-)$1	1	126	130	11.9999
))((	chr2:153533863-153534090(-)$1	1	115	119	11.9999
....	chr2:71653702-71653989(+)$1	1	36	40	11.9999
....	chr20:34090336-34090583(+)$1	1	24	28	11.9999
))))	chr19:8530108-8530410(+)$1	1	259	263	11.9999
((..	chr1:154145282-154145556(-)$1	1	126	130	11.9999
....	chr6:56342042-56342270(-)$1	1	2	6	11.9999
...)	chr3:184049160-184049415(+)$1	1	98	102	11.9999
....	chr5:139905658-139905927(+)$1	1	67	71	11.9999
((..	chr7:151860656-151860916(-)$1	1	41	45	11.9999
...(	chr3:123419174-123419446(-)$1	1	8	12	11.9999
))))	chr17:48823798-48824166(+)$1	1	74	78	11.9999
...)	chr17:27420244-27420541(-)$1	1	31	35	11.9999
....	chr3:123366035-123366374(-)$1	1	160	164	11.9999
(((.	chr2:54114421-54114700(-)$1	1	220	224	11.9999
(...	chr16:89350838-89351078(-)$1	1	54	58	11.9999
(((.	chr2:8910811-8911056(-)$1	1	204	208	11.9999
((..	chr6:56422027-56422278(-)$1	1	15	19	11.9999
))))	chr16:89383304-89383575(-)$1	1	85	89	11.9999
))))	chr2:216213718-216213966(+)$1	1	101	105	11.9999
(((.	chr16:69681321-69681590(+)$1	1	61	65	11.9999
..).	chr2:232577052-232577260(+)$1	1	65	69	11.9999
..))	chr11:64536800-64537124(-)$1	1	55	59	11.9999
(..(	chr3:184043055-184043261(+)$1	1	51	55	11.9999
(.((	chr3:25650958-25651203(-)$1	1	39	43	11.9999

#PSSM
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	

#score	1127.9999999999995
#seq	94
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_transcript_m3_run1.nuc.txt

#NT
GUCCCCUGUCGGUGAGGGCCCCGGUCGGUGAGGGCCCCGGUCGGUGAGGGUCCCCGGUCGGUGAGGUCCCCGGUCGGUGAGGGCCCCGGUCGGUGAGGGUCCCCGGUCGGUGAGGGCCCCUGUUGGUGAGGGCCCCGGUCGGUGAGGGCGCCCCGUCGGUGAGGGUCCCGGUCGGUGAGGGCCCCGGUCGGUGAGGGUCCCCAGUCGGUGAGGGUCCCGGUCAGUGAGGGUCCCCGGUCGGUGAGGGUCCCCUGUCGGUGAGGGUCCCGGUCGGUGAGGGCCGCUCUGCCACACAGGUUCCUCAUGGGUGCCUCC	chr16:601005-601324(+)$1	319	0	315	400.0000

#otherMatches

#Struct PSSM
55555ccc]iiiiiiiiiDDDD{CCCEEEEENNNNNIIIIIIIII{CCCFFFFFF{DDDD{BBKKBBKKAddddccc[dddd$$$$$ccc[a[dddd!!fffffflllffffff22dddd]a]ccc4444ddddccc]dddd:ccc!!ffffff!!bb!!bbffffffmmmmffffff666666bb22bb22ffffff22ccc::::::::iiiiiiiiissssssssssiiiiiiiii::::hhhhhhhhcccqqqqqqqqccc333hhhhhhhh:::bb[cccmmmmccc]bbAYYBBBB}DDDD}FFFFFF~	chr19:11037914-11038359(-)$1	445	89	404	400.0000
:::::::::CCC{DDDDDDDDggggggg"""ffffff!!ffffff!!ffffffhhhhhhhhqqqqqqqqhhhhhhhh333ffffff22ffffff22ffffffgggggggggggggg!!eeeeeddddccceeeee!!eeeee"""ccc[ddddffffff!!ddddbbhhhhhhhh"""ffffff"""ccc[cccccc[cccbbnnnnnbb]ccc]ccc22ccc]cccffffffhhhhhhhh]bb55555dddd]ffffff]ddddccc22eeeee22eeeee]ccc]dddd]eeeee]gggggggDDDD}DDDDC	chr16:601005-601324(+)$1	319	0	315	400.0000

#DB
.....))).)))))))))((((.((((((((.....(((((((((.(((((((((.((((.((..((..((((((((.((((.....(((.(.((((..((((((...))))))..)))).).)))....))))))).)))).(((..((((((..((..((((((((....))))))......))..))..))))))..)))........(((((((((..........)))))))))....(((((((((((........)))...))))))))...((.(((....))).)))..)))).)))).)))))).	chr19:11037914-11038359(-)$1	1	89	404	400.0000
.........(((.(((((((((((((((...((((((..((((((..((((((((((((((........))))))))...))))))..))))))..)))))))))))))(((((((..(((((((((((((((((..(((((...(((.((((((((((..((((((((((((((...((((((...(((.((((((.(((((.....)).))).)))..))).))))))))))))))))).)).....)))).)))))).)))))))..)))))..))))).))).)))).))))).))))))))))).)))))	chr16:601005-601324(+)$1	1	0	315	400.0000

#PSSM
G : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
a : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
u : 0.50	U : 0.50	
a : 0.50	C : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
c : 0.50	U : 0.50	
u : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
u : 0.50	C : 0.50	
u : 0.50	G : 0.50	
a : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
u : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
c : 0.50	C : 0.50	
u : 0.50	C : 0.50	
a : 0.50	C : 0.50	
u : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	U : 0.50	
a : 0.50	G : 0.50	
c : 0.50	G : 0.50	
a : 0.50	U : 0.50	
c : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
c : 0.50	C : 0.50	
a : 0.50	C : 0.50	
c : 0.50	G : 0.50	
a : 0.50	G : 0.50	
c : 0.50	U : 0.50	
a : 0.50	C : 0.50	
c : 0.50	G : 0.50	
a : 0.50	G : 0.50	
a : 0.50	U : 0.50	
u : 0.50	G : 0.50	
c : 0.50	A : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
u : 0.50	C : 0.50	
u : 0.50	C : 0.50	
a : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
a : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	G : 0.50	
u : 0.50	U : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
a : 0.50	C : 0.50	
u : 0.50	C : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	C : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
c : 0.50	G : 0.50	
c : 0.50	G : 0.50	
u : 0.50	G : 0.50	
a : 0.50	U : 0.50	
a : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
c : 0.50	C : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
u : 0.50	G : 0.50	
u : 0.50	U : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	A : 0.50	
a : 0.50	G : 0.50	
a : 0.50	U : 0.50	
u : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
a : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	C : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
u : 0.50	G : 0.50	
a : 0.50	G : 0.50	
u : 0.50	G : 0.50	
a : 0.50	U : 0.50	
u : 0.50	C : 0.50	
g : 0.50	C : 0.50	
u : 0.50	C : 0.50	
u : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
a : 0.50	U : 0.50	
c : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
a : 0.50	C : 0.50	
c : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
a : 0.50	U : 0.50	
u : 0.50	C : 0.50	
a : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
a : 0.50	U : 0.50	
a : 0.50	C : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
g : 0.50	C : 0.50	
a : 0.50	A : 0.50	
c : 0.50	C : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	U : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
a : 0.50	U : 0.50	
g : 0.50	C : 0.50	
u : 0.50	A : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
u : 0.50	G : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	C : 0.50	
u : 0.50	C : 0.50	

#score	800.0
#seq	2
#width	315
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_UTR_m1_run2.nuc.txt

#NT
UUUUUUUUU	chr14:21731679-21731902(-)$1	223	80	89	21.6666
UUUUUUUUU	chr3:32933418-32933652(+)$1	234	9	18	21.6666
UUUGUUUUU	chr14:50235029-50235305(+)$1	276	96	105	18.6666
UAUGUUUUU	chr16:85838465-85838808(+)$1	343	65	74	14.6666
GUUUAUUUU	chr10:102122548-102122784(+)$1	236	90	99	14.6666
UUUAAUUUU	chr16:74506148-74506403(-)$1	255	79	88	15.6666
UUUCUCUUU	chr17:75212402-75212697(+)$1	295	200	209	13.9999
UUUUUUGUU	chr6:26031727-26031957(-)$1	230	166	175	17.6666
UCUUUUUUU	chr6:43752768-43753032(+)$1	264	96	105	17.6666
UUUUUUUUU	chrX:132669837-132670063(-)$1	226	0	9	21.6666
UUUUUUCUU	chr4:155511743-155511982(-)$1	239	212	221	17.6666
UUAUAUUUU	chr18:43669431-43669704(-)$1	273	228	237	15.3333
uuuuuuuuu	chr11:125472097-125472411(+)$1	314	240	249	21.6666
UUAUGUUUU	chrX:132669812-132670037(-)$1	225	32	41	14.6666

#otherMatches

#Struct PSSM
:::::::::	chrX:132669918-132670156(-)$1	238	89	98	21.6666
bb!!dddd!	chr14:21731679-21731902(-)$1	223	80	89	21.6666
hhhrrrrrr	chr3:32933418-32933652(+)$1	234	9	18	21.6666
ttttttttt	chr14:50235029-50235305(+)$1	276	96	105	18.6666
:::::::dd	chr16:85838465-85838808(+)$1	343	65	74	14.6666
fvvvvvvvv	chr10:102122548-102122784(+)$1	236	90	99	14.6666
neeeeeeee	chr16:74506148-74506403(-)$1	255	79	88	15.6666
hh333bb22	chr17:75212402-75212697(+)$1	295	200	209	13.9999
fnnnnnfff	chr6:26031727-26031957(-)$1	230	166	175	17.6666
+++++++++	chr6:43752768-43753032(+)$1	264	96	105	17.6666
::::::::g	chrX:132669837-132670063(-)$1	226	0	9	21.6666
::::::::B	chr4:155511743-155511982(-)$1	239	212	221	17.6666
gggnnnnng	chr18:43669431-43669704(-)$1	273	228	237	15.3333
=========	chr11:125472097-125472411(+)$1	314	240	249	21.6666
yyyyyyyyy	chrX:132669812-132670037(-)$1	225	32	41	14.6666

#DB
.........	chrX:132669918-132670156(-)$1	1	89	98	21.6666
((..((((.	chr14:21731679-21731902(-)$1	1	80	89	21.6666
(((......	chr3:32933418-32933652(+)$1	1	9	18	21.6666
.........	chr14:50235029-50235305(+)$1	1	96	105	18.6666
.......((	chr16:85838465-85838808(+)$1	1	65	74	14.6666
(........	chr10:102122548-102122784(+)$1	1	90	99	14.6666
.))))))))	chr16:74506148-74506403(-)$1	1	79	88	15.6666
))...))..	chr17:75212402-75212697(+)$1	1	200	209	13.9999
(.....)))	chr6:26031727-26031957(-)$1	1	166	175	17.6666
.........	chr6:43752768-43753032(+)$1	1	96	105	17.6666
........(	chrX:132669837-132670063(-)$1	1	0	9	21.6666
........)	chr4:155511743-155511982(-)$1	1	212	221	17.6666
(((.....)	chr18:43669431-43669704(-)$1	1	228	237	15.3333
(((((((((	chr11:125472097-125472411(+)$1	1	240	249	21.6666
.........	chrX:132669812-132670037(-)$1	1	32	41	14.6666

#PSSM
U : 0.86	G : 0.06	u : 0.06	
U : 0.79	A : 0.06	C : 0.06	u : 0.06	
U : 0.79	A : 0.13	u : 0.06	
U : 0.66	G : 0.13	A : 0.06	C : 0.06	u : 0.06	
U : 0.66	A : 0.20	u : 0.06	G : 0.06	
U : 0.86	C : 0.06	u : 0.06	
U : 0.79	G : 0.06	C : 0.06	u : 0.06	
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	

#score	268.99999999999994
#seq	15
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_UTR_m2_run2.nuc.txt

#NT
CCACCACCCC	chr11:57585401-57585676(+)$1	275	60	70	18.0000
CCUCCUCCUC	chr17:40931357-40931627(+)$1	270	72	82	18.0000
CCCCCACCCC	chr19:18642603-18642873(-)$1	270	229	239	18.3000
CCACCACCGC	chr11:2151090-2151297(-)$1	207	192	202	18.7000
CCUCCACUCC	chr11:2159908-2160125(-)$1	217	9	19	16.4000
CCUCCUCUCC	chr1:32799827-32800077(-)$1	250	22	32	14.3000
CCCCCACCGC	chr6:33267678-33268022(-)$1	344	18	28	19.0000
ccucccccac	chr17:7154694-7154977(-)$1	283	10	20	16.7000
UCUCCACCUC	chr17:17723517-17723808(-)$1	291	98	108	15.8000
CCGCCACCGC	chr11:2160105-2160322(-)$1	217	111	121	19.4000
CCUCCAUCCC	chr17:75494969-75495196(+)$1	227	178	188	15.9000
CCUCCACCCC	chr6:41567122-41567380(+)$1	258	224	234	20.4000
CCCCCCCCGC	chr11:2160240-2160449(-)$1	209	148	158	16.7000
ccuccaucuc	chr19:17452768-17453050(+)$1	282	225	235	15.6000
CCGCCACCGC	chr11:2160053-2160256(-)$1	203	45	55	19.4000
ccuccaccuc	chr9:132900595-132900996(+)$1	401	201	211	20.1000
UCUCCACCCC	chr16:28834266-28834514(+)$1	248	160	170	16.1000
CUUCCACCUC	chr12:121136353-121136622(+)$1	269	157	167	15.3000
CCUCCUCGCC	chr7:2701879-2702155(+)$1	276	21	31	14.0000
CCGcccccgc	chr19:45324155-45324425(+)$1	270	98	108	17.1000
ccuccuccuc	chr1:20812443-20812735(-)$1	292	141	151	18.0000
ccuccgcccc	chr17:57697251-57697552(+)$1	301	66	76	17.4000
CCACCACCGC	chr11:2151036-2151251(-)$1	215	146	156	18.7000
ccgcccccgc	chr11:2160412-2160620(-)$1	208	58	68	17.1000
gcuccaccgc	chr7:917362-917670(+)$1	308	4	14	16.6000
CCUCCACCGC	chr12:6679625-6679911(-)$1	286	88	98	21.1000
CCUCCACAGC	chr12:56555075-56555418(+)$1	343	48	58	16.8000
CCUUCACCUC	chr12:58115026-58115297(+)$1	271	182	192	15.8000
ccgcccccgc	chr11:2160402-2160612(-)$1	210	50	60	17.1000
CCGUCACCGC	chr16:3119265-3119517(+)$1	252	117	127	15.1000
ccgcccccgc	chr11:2160366-2160589(-)$1	223	27	37	17.1000
CCACCAGCGC	chr11:2160318-2160534(-)$1	216	11	21	14.1000
CCCCCACCGA	chr12:57606779-57607046(+)$1	267	143	153	14.2000
CCGCCUCCGC	chr4:77996639-77996936(-)$1	297	195	205	17.3000
CCUCCACCCC	chr19:40884006-40884332(+)$1	326	216	226	20.4000
CCGCCACCGC	chr11:2160197-2160403(-)$1	206	192	202	19.4000
CCCCCACCCC	chr19:14203527-14203827(-)$1	300	21	31	18.3000
CCUCCUCCUC	chr17:6917495-6917799(+)$1	304	40	50	18.0000
CCUCCACCCC	chr10:74127675-74127973(-)$1	298	43	53	20.4000
CCUCUACCUC	chr20:33298246-33298575(+)$1	329	175	185	15.3000
CCCCCACCUC	chr10:73576920-73577184(-)$1	264	97	107	18.0000
CCUCCUCUGC	chr1:11986188-11986449(-)$1	261	217	227	15.0000
CCGCCACCGC	chr11:2160017-2160231(-)$1	214	20	30	19.4000
CCUCCCCUCC	chr20:251459-251845(-)$1	386	18	28	14.1000
ccuccuccuc	chr1:205473632-205473935(+)$1	303	97	107	18.0000
ccgccuccgc	chr21:40177523-40177918(+)$1	395	57	67	17.3000
UCUCCCCCCC	chr17:36904405-36904681(-)$1	276	18	28	13.8000
CCUUCACCCC	chr11:65622431-65622687(-)$1	256	3	13	16.1000
ccuccuccuc	chr1:20812354-20812635(-)$1	281	41	51	18.0000

#otherMatches

#Struct PSSM
DDDDD}EEEE	chr14:101193235-101193479(+)$1	244	130	140	14.5000
^^^^^^^^^^	chr11:57585401-57585676(+)$1	275	60	70	18.0000
VVVVVVVVVD	chr17:40931357-40931627(+)$1	270	72	82	18.0000
hh88888888	chr19:18642603-18642873(-)$1	270	229	239	18.3000
gg::::BB}D	chr11:2151090-2151297(-)$1	207	192	202	18.7000
oooooobb]e	chr11:2159908-2160125(-)$1	217	9	19	16.4000
::::::::::	chr1:32799827-32800077(-)$1	250	22	32	14.3000
++++eeeee[	chr6:33267678-33268022(-)$1	344	18	28	19.0000
E:::::::::	chr17:7154694-7154977(-)$1	283	10	20	16.7000
ddd333iiii	chr17:17723517-17723808(-)$1	291	98	108	15.8000
mmmmdddddd	chr11:2160105-2160322(-)$1	217	111	121	19.4000
FFFFFF}EEE	chr17:75494969-75495196(+)$1	227	178	188	15.9000
eee:BBYYHH	chr6:41567122-41567380(+)$1	258	224	234	20.4000
||||FFFFFF	chr11:2160240-2160449(-)$1	209	148	158	16.7000
2eeeee333b	chr19:17452768-17453050(+)$1	282	225	235	15.6000
FFccc!!ccc	chr11:2160053-2160256(-)$1	203	45	55	19.4000
::::::::::	chr9:132900595-132900996(+)$1	401	201	211	20.1000
yyyyyyyyyy	chr16:28834266-28834514(+)$1	248	160	170	16.1000
fffff]eeee	chr12:121136353-121136622(+)$1	269	157	167	15.3000
pppppppbbd	chr7:2701879-2702155(+)$1	276	21	31	14.0000
'''''''ccc	chr19:45324155-45324425(+)$1	270	98	108	17.1000
::::::::::	chr1:20812443-20812735(-)$1	292	141	151	18.0000
{DDDDNNNNN	chr17:57697251-57697552(+)$1	301	66	76	17.4000
gg:bb[gggg	chr11:2151036-2151251(-)$1	215	146	156	18.7000
eee333ccc3	chr11:2160412-2160620(-)$1	208	58	68	17.1000
ccoooooocc	chr7:917362-917670(+)$1	308	4	14	16.6000
fffCCC{EEE	chr12:6679625-6679911(-)$1	286	88	98	21.1000
qqqqqbb]cc	chr12:56555075-56555418(+)$1	343	48	58	16.8000
f:eeeee"""	chr12:58115026-58115297(+)$1	271	182	192	15.8000
eee333ccc3	chr11:2160402-2160612(-)$1	210	50	60	17.1000
::::::::ee	chr16:3119265-3119517(+)$1	252	117	127	15.1000
eee:::::cc	chr11:2160366-2160589(-)$1	223	27	37	17.1000
eexxxxxxxx	chr11:2160318-2160534(-)$1	216	11	21	14.1000
eeebb[bb""	chr12:57606779-57607046(+)$1	267	143	153	14.2000
hhhhhhh###	chr4:77996639-77996936(-)$1	297	195	205	17.3000
::::bb!!bb	chr19:40884006-40884332(+)$1	326	216	226	20.4000
cddddBB}FF	chr11:2160197-2160403(-)$1	206	192	202	19.4000
::::::::::	chr19:14203527-14203827(-)$1	300	21	31	18.3000
eeeeennnnn	chr17:6917495-6917799(+)$1	304	40	50	18.0000
:::::::::d	chr10:74127675-74127973(-)$1	298	43	53	20.4000
bbrrrrrrrr	chr20:33298246-33298575(+)$1	329	175	185	15.3000
mmccc:::GG	chr10:73576920-73577184(-)$1	264	97	107	18.0000
EE}AYYEEEE	chr1:11986188-11986449(-)$1	261	217	227	15.0000
ccccc!!ccc	chr11:2160017-2160231(-)$1	214	20	30	19.4000
c:::CCC{DD	chr20:251459-251845(-)$1	386	18	28	14.1000
eeeee]bb::	chr1:205473632-205473935(+)$1	303	97	107	18.0000
]ccc4444bb	chr21:40177523-40177918(+)$1	395	57	67	17.3000
33ccc:::::	chr17:36904405-36904681(-)$1	276	18	28	13.8000
:EEEEE{DDD	chr11:65622431-65622687(-)$1	256	3	13	16.1000
::::::::::	chr1:20812354-20812635(-)$1	281	41	51	18.0000

#DB
))))).))))	chr14:101193235-101193479(+)$1	1	130	140	14.5000
..........	chr11:57585401-57585676(+)$1	1	60	70	18.0000
.........(	chr17:40931357-40931627(+)$1	1	72	82	18.0000
))........	chr19:18642603-18642873(-)$1	1	229	239	18.3000
))....)).)	chr11:2151090-2151297(-)$1	1	192	202	18.7000
......)).)	chr11:2159908-2160125(-)$1	1	9	19	16.4000
..........	chr1:32799827-32800077(-)$1	1	22	32	14.3000
....(((((.	chr6:33267678-33268022(-)$1	1	18	28	19.0000
(.........	chr17:7154694-7154977(-)$1	1	10	20	16.7000
)))...))))	chr17:17723517-17723808(-)$1	1	98	108	15.8000
....))))((	chr11:2160105-2160322(-)$1	1	111	121	19.4000
)))))).)))	chr17:75494969-75495196(+)$1	1	178	188	15.9000
))).))..))	chr6:41567122-41567380(+)$1	1	224	234	20.4000
....))))))	chr11:2160240-2160449(-)$1	1	148	158	16.7000
.)))))...)	chr19:17452768-17453050(+)$1	1	225	235	15.6000
(((((..(((	chr11:2160053-2160256(-)$1	1	45	55	19.4000
..........	chr9:132900595-132900996(+)$1	1	201	211	20.1000
..........	chr16:28834266-28834514(+)$1	1	160	170	16.1000
))))).))))	chr12:121136353-121136622(+)$1	1	157	167	15.3000
.......)))	chr7:2701879-2702155(+)$1	1	21	31	14.0000
.......(((	chr19:45324155-45324425(+)$1	1	98	108	17.1000
..........	chr1:20812443-20812735(-)$1	1	141	151	18.0000
.((((.....	chr17:57697251-57697552(+)$1	1	66	76	17.4000
)).((.((((	chr11:2151036-2151251(-)$1	1	146	156	18.7000
)))...))).	chr11:2160412-2160620(-)$1	1	58	68	17.1000
((......))	chr7:917362-917670(+)$1	1	4	14	16.6000
)))(((.(((	chr12:6679625-6679911(-)$1	1	88	98	21.1000
.....)).))	chr12:56555075-56555418(+)$1	1	48	58	16.8000
).(((((...	chr12:58115026-58115297(+)$1	1	182	192	15.8000
)))...))).	chr11:2160402-2160612(-)$1	1	50	60	17.1000
........((	chr16:3119265-3119517(+)$1	1	117	127	15.1000
))).....((	chr11:2160366-2160589(-)$1	1	27	37	17.1000
((........	chr11:2160318-2160534(-)$1	1	11	21	14.1000
(((((.((..	chr12:57606779-57607046(+)$1	1	143	153	14.2000
(((((((...	chr4:77996639-77996936(-)$1	1	195	205	17.3000
....((..((	chr19:40884006-40884332(+)$1	1	216	226	20.4000
))))))).))	chr11:2160197-2160403(-)$1	1	192	202	19.4000
..........	chr19:14203527-14203827(-)$1	1	21	31	18.3000
(((((.....	chr17:6917495-6917799(+)$1	1	40	50	18.0000
.........(	chr10:74127675-74127973(-)$1	1	43	53	20.4000
((........	chr20:33298246-33298575(+)$1	1	175	185	15.3000
..)))...))	chr10:73576920-73577184(-)$1	1	97	107	18.0000
)).)..))))	chr1:11986188-11986449(-)$1	1	217	227	15.0000
(((((..(((	chr11:2160017-2160231(-)$1	1	20	30	19.4000
)...(((.((	chr20:251459-251845(-)$1	1	18	28	14.1000
))))).))..	chr1:205473632-205473935(+)$1	1	97	107	18.0000
.)))....))	chr21:40177523-40177918(+)$1	1	57	67	17.3000
..))).....	chr17:36904405-36904681(-)$1	1	18	28	13.8000
.(((((.(((	chr11:65622431-65622687(-)$1	1	3	13	16.1000
..........	chr1:20812354-20812635(-)$1	1	41	51	18.0000

#PSSM
C : 0.70	c : 0.21	U : 0.06	g : 0.02	
C : 0.74	c : 0.23	U : 0.02	
U : 0.40	u : 0.16	C : 0.14	G : 0.14	A : 0.08	g : 0.08	
C : 0.66	c : 0.25	U : 0.06	G : 0.02	
C : 0.72	c : 0.25	U : 0.02	
A : 0.56	U : 0.12	c : 0.10	u : 0.08	C : 0.06	a : 0.06	g : 0.02	
C : 0.70	c : 0.23	U : 0.02	u : 0.02	G : 0.02	
C : 0.62	c : 0.25	U : 0.08	G : 0.02	A : 0.02	
G : 0.32	C : 0.27	U : 0.14	g : 0.12	u : 0.10	a : 0.02	c : 0.02	
C : 0.72	c : 0.25	A : 0.02	

#score	857.6000000000007
#seq	50
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_transcript_m3_run1.nuc.txt

#NT
UUCC	chr12:56704893-56705142(-)$1	249	33	37	12.0000
UUCC	chr1:44441883-44442123(+)$1	240	81	85	12.0000
UUCC	chr6:43193424-43193714(-)$1	290	78	82	12.0000
UUCC	chr6:31745238-31745522(-)$1	284	3	7	12.0000
UUCC	chr9:6532619-6532878(-)$1	259	71	75	12.0000
UUCC	chr7:128505618-128505860(+)$1	242	38	42	12.0000
UUCC	chr9:101990089-101990332(+)$1	243	51	55	12.0000
UUCC	chr17:37009220-37009425(-)$1	205	44	48	12.0000
UUCC	chr1:8921167-8921422(-)$1	255	147	151	12.0000
UUCC	chr20:60962807-60963029(+)$1	222	45	49	12.0000
UUCC	chr20:60711703-60711931(-)$1	228	89	93	12.0000
UUCC	chr12:118582479-118582746(+)$1	267	24	28	12.0000
UUCC	chr2:85824467-85824698(+)$1	231	91	95	12.0000
UUCC	chr16:75141621-75141876(+)$1	255	108	112	12.0000
UUCC	chr8:101734103-101734313(-)$1	210	167	171	12.0000
UUCC	chr20:2442245-2442504(-)$1	259	54	58	12.0000
UUCC	chr19:50002679-50002887(+)$1	208	198	202	12.0000
UUCC	chr1:19952829-19953084(+)$1	255	113	117	12.0000
UUCC	chr6:31919551-31919763(+)$1	212	5	9	12.0000
UUCC	chrX:38547819-38548073(+)$1	254	112	116	12.0000
UUCC	chr12:56510477-56510680(+)$1	203	71	75	12.0000
UUCC	chr11:46760771-46760993(+)$1	222	136	140	12.0000
UUCC	chr17:79993791-79994028(-)$1	237	54	58	12.0000
UUCC	chr5:149827167-149827395(-)$1	228	83	87	12.0000
UUCC	chr19:2732495-2732782(-)$1	287	19	23	12.0000
UUCC	chr20:3734464-3734762(-)$1	298	138	142	12.0000
UUCC	chr11:63743758-63744010(+)$1	252	139	143	12.0000
UUCC	chr8:144662181-144662431(-)$1	250	132	136	12.0000
UUCC	chr2:203071606-203071822(-)$1	216	170	174	12.0000
UUCC	chr1:40538366-40538633(-)$1	267	132	136	12.0000
UUCC	chr11:66034721-66035016(+)$1	295	197	201	12.0000
UUCC	chr6:42906821-42907063(+)$1	242	142	146	12.0000
UUCC	chr17:7076795-7077013(-)$1	218	164	168	12.0000
UUCC	chr22:19423333-19423656(+)$1	323	35	39	12.0000
UUCC	chr8:125561971-125562193(+)$1	222	8	12	12.0000
UUCC	chr8:146017662-146017871(-)$1	209	93	97	12.0000
UUCC	chr20:1145729-1146014(+)$1	285	22	26	12.0000
UUCC	chr16:732505-732800(+)$1	295	60	64	12.0000
UUCC	chr4:667040-667283(-)$1	243	38	42	12.0000
UUCC	chr19:41930576-41930843(+)$1	267	30	34	12.0000
UUCC	chr14:50052580-50052814(-)$1	234	111	115	12.0000
UUCC	chr18:12329047-12329299(-)$1	252	120	124	12.0000
UUCC	chr9:139686602-139686811(+)$1	209	80	84	12.0000
UUCC	chr19:36139184-36139400(+)$1	216	29	33	12.0000
UUCC	chr20:32664791-32665059(+)$1	268	31	35	12.0000
UUCC	chr11:2159612-2159824(-)$1	212	102	106	12.0000
UUCC	chr3:33038366-33038631(-)$1	265	226	230	12.0000
UUCC	chr1:19630539-19630785(-)$1	246	58	62	12.0000
uucc	chr17:40554443-40554770(-)$1	327	88	92	12.0000
UUCC	chr1:1375850-1376114(+)$1	264	17	21	12.0000
UUCC	chr6:30460453-30460712(+)$1	259	139	143	12.0000
UUCC	chr10:102746182-102746445(-)$1	263	15	19	12.0000
UUCC	chr11:77811948-77812320(-)$1	372	70	74	12.0000
UUCC	chr17:76967409-76967620(-)$1	211	34	38	12.0000
UUCC	chr17:1657785-1658039(+)$1	254	105	109	12.0000
UUCC	chr10:72643220-72643473(-)$1	253	26	30	12.0000
UUCC	chr5:130498181-130498415(-)$1	234	38	42	12.0000
UUCC	chr7:42962821-42963086(-)$1	265	68	72	12.0000
UUCC	chr7:143087950-143088190(+)$1	240	52	56	12.0000
UUCC	chr11:62656037-62656344(+)$1	307	110	114	12.0000
UUCC	chr19:12779069-12779328(-)$1	259	250	254	12.0000
UUCC	chr7:99751437-99751751(+)$1	314	11	15	12.0000
UUCC	chr20:48568518-48568871(+)$1	353	199	203	12.0000
UUCC	chr22:24313542-24313800(-)$1	258	4	8	12.0000
UUCC	chr21:35276157-35276424(-)$1	267	147	151	12.0000
UUCC	chr3:47454388-47454645(+)$1	257	1	5	12.0000
UUCC	chr6:44081437-44081712(-)$1	275	96	100	12.0000
UUCC	chr14:23567431-23567665(+)$1	234	95	99	12.0000
UUCC	chr13:100215253-100215521(+)$1	268	45	49	12.0000
UUCC	chr22:38075509-38075801(+)$1	292	163	167	12.0000
UUCC	chrX:130407588-130407867(-)$1	279	87	91	12.0000
UUCC	chr7:150037127-150037362(-)$1	235	72	76	12.0000
UUCC	chr19:8386350-8386553(+)$1	203	180	184	12.0000
UUCC	chr10:7791291-7791505(+)$1	214	47	51	12.0000
UUCC	chr17:39979283-39979536(+)$1	253	151	155	12.0000
UUCC	chr17:37008873-37009085(-)$1	212	157	161	12.0000
UUCC	chr17:37009852-37010080(-)$1	228	88	92	12.0000
UUCC	chr19:50028270-50028562(+)$1	292	29	33	12.0000
uucc	chr6:31382850-31383147(+)$1	297	94	98	12.0000
UUCC	chr12:16516900-16517229(+)$1	329	32	36	12.0000

#otherMatches

#Struct PSSM
::::	chr14:34985155-34985435(-)$1	280	108	112	12.0000
dddd	chr12:56704893-56705142(-)$1	249	33	37	12.0000
c333	chr1:44441883-44442123(+)$1	240	81	85	12.0000
====	chr6:43193424-43193714(-)$1	290	78	82	12.0000
::::	chr6:31745238-31745522(-)$1	284	3	7	12.0000
ffff	chr9:6532619-6532878(-)$1	259	71	75	12.0000
CNNN	chr7:128505618-128505860(+)$1	242	38	42	12.0000
ssss	chr9:101990089-101990332(+)$1	243	51	55	12.0000
^^^^	chr17:37009220-37009425(-)$1	205	44	48	12.0000
eee!	chr1:8921167-8921422(-)$1	255	147	151	12.0000
oood	chr20:60962807-60963029(+)$1	222	45	49	12.0000
c^^^	chr20:60711703-60711931(-)$1	228	89	93	12.0000
:::d	chr12:118582479-118582746(+)$1	267	24	28	12.0000
ssss	chr2:85824467-85824698(+)$1	231	91	95	12.0000
nnnc	chr16:75141621-75141876(+)$1	255	108	112	12.0000
^^^^	chr8:101734103-101734313(-)$1	210	167	171	12.0000
mmmb	chr20:2442245-2442504(-)$1	259	54	58	12.0000
EEEE	chr19:50002679-50002887(+)$1	208	198	202	12.0000
::::	chr1:19952829-19953084(+)$1	255	113	117	12.0000
::::	chr6:31919551-31919763(+)$1	212	5	9	12.0000
FFFF	chrX:38547819-38548073(+)$1	254	112	116	12.0000
::::	chr12:56510477-56510680(+)$1	203	71	75	12.0000
dddd	chr11:46760771-46760993(+)$1	222	136	140	12.0000
]ccc	chr17:79993791-79994028(-)$1	237	54	58	12.0000
====	chr5:149827167-149827395(-)$1	228	83	87	12.0000
mmbb	chr19:2732495-2732782(-)$1	287	19	23	12.0000
:::h	chr20:3734464-3734762(-)$1	298	138	142	12.0000
777c	chr11:63743758-63744010(+)$1	252	139	143	12.0000
gggg	chr8:144662181-144662431(-)$1	250	132	136	12.0000
9999	chr2:203071606-203071822(-)$1	216	170	174	12.0000
==cc	chr1:40538366-40538633(-)$1	267	132	136	12.0000
&&&&	chr11:66034721-66035016(+)$1	295	197	201	12.0000
::::	chr6:42906821-42907063(+)$1	242	142	146	12.0000
eeee	chr17:7076795-7077013(-)$1	218	164	168	12.0000
c!!f	chr22:19423333-19423656(+)$1	323	35	39	12.0000
nnnn	chr8:125561971-125562193(+)$1	222	8	12	12.0000
!!bb	chr8:146017662-146017871(-)$1	209	93	97	12.0000
####	chr20:1145729-1146014(+)$1	285	22	26	12.0000
e:GG	chr16:732505-732800(+)$1	295	60	64	12.0000
ggg[	chr4:667040-667283(-)$1	243	38	42	12.0000
E{EE	chr19:41930576-41930843(+)$1	267	30	34	12.0000
hhhh	chr14:50052580-50052814(-)$1	234	111	115	12.0000
FFFF	chr18:12329047-12329299(-)$1	252	120	124	12.0000
e::f	chr9:139686602-139686811(+)$1	209	80	84	12.0000
BLLL	chr19:36139184-36139400(+)$1	216	29	33	12.0000
ddd[	chr20:32664791-32665059(+)$1	268	31	35	12.0000
::::	chr11:2159612-2159824(-)$1	212	102	106	12.0000
ee[a	chr3:33038366-33038631(-)$1	265	226	230	12.0000
::::	chr1:19630539-19630785(-)$1	246	58	62	12.0000
:eee	chr17:40554443-40554770(-)$1	327	88	92	12.0000
dddd	chr1:1375850-1376114(+)$1	264	17	21	12.0000
eeea	chr6:30460453-30460712(+)$1	259	139	143	12.0000
JJJ:	chr10:102746182-102746445(-)$1	263	15	19	12.0000
eeee	chr11:77811948-77812320(-)$1	372	70	74	12.0000
]ddd	chr17:76967409-76967620(-)$1	211	34	38	12.0000
ggga	chr17:1657785-1658039(+)$1	254	105	109	12.0000
rrrr	chr10:72643220-72643473(-)$1	253	26	30	12.0000
d444	chr5:130498181-130498415(-)$1	234	38	42	12.0000
ggg9	chr7:42962821-42963086(-)$1	265	68	72	12.0000
dlll	chr7:143087950-143088190(+)$1	240	52	56	12.0000
dddd	chr11:62656037-62656344(+)$1	307	110	114	12.0000
ZDDD	chr19:12779069-12779328(-)$1	259	250	254	12.0000
iiii	chr7:99751437-99751751(+)$1	314	11	15	12.0000
^^^^	chr20:48568518-48568871(+)$1	353	199	203	12.0000
:ddd	chr22:24313542-24313800(-)$1	258	4	8	12.0000
gggg	chr21:35276157-35276424(-)$1	267	147	151	12.0000
::::	chr3:47454388-47454645(+)$1	257	1	5	12.0000
ffmm	chr6:44081437-44081712(-)$1	275	96	100	12.0000
e"""	chr14:23567431-23567665(+)$1	234	95	99	12.0000
d:::	chr13:100215253-100215521(+)$1	268	45	49	12.0000
ddd:	chr22:38075509-38075801(+)$1	292	163	167	12.0000
ffff	chrX:130407588-130407867(-)$1	279	87	91	12.0000
$$$f	chr7:150037127-150037362(-)$1	235	72	76	12.0000
cc]d	chr19:8386350-8386553(+)$1	203	180	184	12.0000
ffff	chr10:7791291-7791505(+)$1	214	47	51	12.0000
====	chr17:39979283-39979536(+)$1	253	151	155	12.0000
FFFF	chr17:37008873-37009085(-)$1	212	157	161	12.0000
EEEE	chr17:37009852-37010080(-)$1	228	88	92	12.0000
eeee	chr19:50028270-50028562(+)$1	292	29	33	12.0000
eeee	chr6:31382850-31383147(+)$1	297	94	98	12.0000
ffff	chr12:16516900-16517229(+)$1	329	32	36	12.0000

#DB
....	chr14:34985155-34985435(-)$1	1	108	112	12.0000
((((	chr12:56704893-56705142(-)$1	1	33	37	12.0000
)...	chr1:44441883-44442123(+)$1	1	81	85	12.0000
((((	chr6:43193424-43193714(-)$1	1	78	82	12.0000
....	chr6:31745238-31745522(-)$1	1	3	7	12.0000
))))	chr9:6532619-6532878(-)$1	1	71	75	12.0000
(...	chr7:128505618-128505860(+)$1	1	38	42	12.0000
....	chr9:101990089-101990332(+)$1	1	51	55	12.0000
....	chr17:37009220-37009425(-)$1	1	44	48	12.0000
(((.	chr1:8921167-8921422(-)$1	1	147	151	12.0000
...)	chr20:60962807-60963029(+)$1	1	45	49	12.0000
(...	chr20:60711703-60711931(-)$1	1	89	93	12.0000
...(	chr12:118582479-118582746(+)$1	1	24	28	12.0000
....	chr2:85824467-85824698(+)$1	1	91	95	12.0000
...)	chr16:75141621-75141876(+)$1	1	108	112	12.0000
....	chr8:101734103-101734313(-)$1	1	167	171	12.0000
...)	chr20:2442245-2442504(-)$1	1	54	58	12.0000
))))	chr19:50002679-50002887(+)$1	1	198	202	12.0000
....	chr1:19952829-19953084(+)$1	1	113	117	12.0000
....	chr6:31919551-31919763(+)$1	1	5	9	12.0000
((((	chrX:38547819-38548073(+)$1	1	112	116	12.0000
....	chr12:56510477-56510680(+)$1	1	71	75	12.0000
))))	chr11:46760771-46760993(+)$1	1	136	140	12.0000
.)))	chr17:79993791-79994028(-)$1	1	54	58	12.0000
((((	chr5:149827167-149827395(-)$1	1	83	87	12.0000
..))	chr19:2732495-2732782(-)$1	1	19	23	12.0000
...(	chr20:3734464-3734762(-)$1	1	138	142	12.0000
...)	chr11:63743758-63744010(+)$1	1	139	143	12.0000
((((	chr8:144662181-144662431(-)$1	1	132	136	12.0000
....	chr2:203071606-203071822(-)$1	1	170	174	12.0000
))((	chr1:40538366-40538633(-)$1	1	132	136	12.0000
....	chr11:66034721-66035016(+)$1	1	197	201	12.0000
....	chr6:42906821-42907063(+)$1	1	142	146	12.0000
((((	chr17:7076795-7077013(-)$1	1	164	168	12.0000
(..(	chr22:19423333-19423656(+)$1	1	35	39	12.0000
....	chr8:125561971-125562193(+)$1	1	8	12	12.0000
..((	chr8:146017662-146017871(-)$1	1	93	97	12.0000
....	chr20:1145729-1146014(+)$1	1	22	26	12.0000
).((	chr16:732505-732800(+)$1	1	60	64	12.0000
(((.	chr4:667040-667283(-)$1	1	38	42	12.0000
(.((	chr19:41930576-41930843(+)$1	1	30	34	12.0000
))))	chr14:50052580-50052814(-)$1	1	111	115	12.0000
((((	chr18:12329047-12329299(-)$1	1	120	124	12.0000
)..(	chr9:139686602-139686811(+)$1	1	80	84	12.0000
(...	chr19:36139184-36139400(+)$1	1	29	33	12.0000
(((.	chr20:32664791-32665059(+)$1	1	31	35	12.0000
....	chr11:2159612-2159824(-)$1	1	102	106	12.0000
((.(	chr3:33038366-33038631(-)$1	1	226	230	12.0000
....	chr1:19630539-19630785(-)$1	1	58	62	12.0000
.(((	chr17:40554443-40554770(-)$1	1	88	92	12.0000
))))	chr1:1375850-1376114(+)$1	1	17	21	12.0000
))))	chr6:30460453-30460712(+)$1	1	139	143	12.0000
(((.	chr10:102746182-102746445(-)$1	1	15	19	12.0000
((((	chr11:77811948-77812320(-)$1	1	70	74	12.0000
.)))	chr17:76967409-76967620(-)$1	1	34	38	12.0000
((((	chr17:1657785-1658039(+)$1	1	105	109	12.0000
....	chr10:72643220-72643473(-)$1	1	26	30	12.0000
)...	chr5:130498181-130498415(-)$1	1	38	42	12.0000
))).	chr7:42962821-42963086(-)$1	1	68	72	12.0000
(...	chr7:143087950-143088190(+)$1	1	52	56	12.0000
))))	chr11:62656037-62656344(+)$1	1	110	114	12.0000
.)))	chr19:12779069-12779328(-)$1	1	250	254	12.0000
((((	chr7:99751437-99751751(+)$1	1	11	15	12.0000
....	chr20:48568518-48568871(+)$1	1	199	203	12.0000
.(((	chr22:24313542-24313800(-)$1	1	4	8	12.0000
((((	chr21:35276157-35276424(-)$1	1	147	151	12.0000
....	chr3:47454388-47454645(+)$1	1	1	5	12.0000
((..	chr6:44081437-44081712(-)$1	1	96	100	12.0000
(...	chr14:23567431-23567665(+)$1	1	95	99	12.0000
)...	chr13:100215253-100215521(+)$1	1	45	49	12.0000
))).	chr22:38075509-38075801(+)$1	1	163	167	12.0000
))))	chrX:130407588-130407867(-)$1	1	87	91	12.0000
...(	chr7:150037127-150037362(-)$1	1	72	76	12.0000
)).)	chr19:8386350-8386553(+)$1	1	180	184	12.0000
))))	chr10:7791291-7791505(+)$1	1	47	51	12.0000
))))	chr17:39979283-39979536(+)$1	1	151	155	12.0000
))))	chr17:37008873-37009085(-)$1	1	157	161	12.0000
))))	chr17:37009852-37010080(-)$1	1	88	92	12.0000
((((	chr19:50028270-50028562(+)$1	1	29	33	12.0000
))))	chr6:31382850-31383147(+)$1	1	94	98	12.0000
))))	chr12:16516900-16517229(+)$1	1	32	36	12.0000

#PSSM
U : 0.97	u : 0.02	
U : 0.97	u : 0.02	
C : 0.97	c : 0.02	
C : 0.97	c : 0.02	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_transcript_m3_run2.nuc.txt

#NT
gcug	chr5:37489092-37489447(+)$1	355	125	129	12.0000
GCUG	chr1:208034831-208035090(-)$1	259	184	188	12.0000
GCUG	chr5:882232-882477(-)$1	245	106	110	12.0000
gcug	chr2:132398989-132399241(+)$1	252	25	29	12.0000
GCUG	chr12:132477091-132477345(+)$1	254	119	123	12.0000
GCUG	chr22:20078366-20078598(+)$1	232	96	100	12.0000
GCUG	chr5:1809367-1809708(+)$1	341	10	14	12.0000
GCUG	chr12:132380344-132380620(+)$1	276	38	42	12.0000
GCUG	chr10:1154992-1155246(+)$1	254	13	17	12.0000
GCUG	chr2:242592689-242592981(+)$1	292	116	120	12.0000
GCUG	chr1:16219720-16220009(+)$1	289	140	144	12.0000
GCUG	chr4:1236533-1236833(-)$1	300	49	53	12.0000
gcug	chr5:180618594-180618805(-)$1	211	109	113	12.0000
gcug	chr5:177632140-177632392(+)$1	252	11	15	12.0000
GCUG	chr6:150518596-150518861(+)$1	265	4	8	12.0000
GCUG	chr9:134295181-134295478(+)$1	297	22	26	12.0000
GCUG	chr5:865963-866232(-)$1	269	51	55	12.0000
GCUG	chr5:1625034-1625297(-)$1	263	31	35	12.0000
GCUG	chr11:2973854-2974095(-)$1	241	80	84	12.0000
gcug	chr4:32072872-32073134(+)$1	262	68	72	12.0000
gcug	chr6:45273933-45274191(-)$1	258	145	149	12.0000
gcug	chr6:161477243-161477516(+)$1	273	129	133	12.0000
GCUG	chr11:48050535-48050873(+)$1	338	29	33	12.0000
gcug	chr9:5019901-5020193(+)$1	292	154	158	12.0000
GCUG	chr4:1906976-1907221(+)$1	245	164	168	12.0000
gcug	chr2:231211816-231212073(+)$1	257	55	59	12.0000
gcug	chr7:156496962-156497216(-)$1	254	36	40	12.0000
GCUG	chr3:197477071-197477332(+)$1	261	55	59	12.0000
GCUG	chr3:41242379-41242658(+)$1	279	35	39	12.0000
gcug	chr22:17109802-17110026(+)$1	224	136	140	12.0000
GCUG	chr19:18632304-18632560(-)$1	256	51	55	12.0000
GCUg	chr17:80866136-80866390(+)$1	254	49	53	12.0000
gcug	chr12:132485484-132485748(+)$1	264	30	34	12.0000
gcug	chr1:2191179-2191444(+)$1	265	124	128	12.0000
gcug	chr10:135221503-135221774(+)$1	271	161	165	12.0000
GCUG	chr19:10474060-10474292(-)$1	232	36	40	12.0000
GCUG	chr16:88729723-88730005(+)$1	282	91	95	12.0000
gcug	chr16:47132926-47133181(-)$1	255	66	70	12.0000
gcug	chr1:167931368-167931650(+)$1	282	35	39	12.0000
gcug	chr7:24657419-24657668(+)$1	249	6	10	12.0000
GCUG	chr17:79877655-79877953(-)$1	298	36	40	12.0000
gcug	chr4:48773535-48773831(-)$1	296	9	13	12.0000
GCUG	chr17:29632339-29632585(+)$1	246	37	41	12.0000
GCUG	chr5:133511914-133512204(-)$1	290	11	15	12.0000
gcug	chr5:93995249-93995565(+)$1	316	122	126	12.0000
gcug	chr21:38834413-38834670(+)$1	257	97	101	12.0000
GCUG	chr12:132554141-132554437(+)$1	296	142	146	12.0000
GCUG	chr3:196304350-196304621(+)$1	271	218	222	12.0000
GCUG	chr7:155573699-155574018(+)$1	319	118	122	12.0000
GCUG	chr11:1000912-1001148(+)$1	236	63	67	12.0000
gcug	chr16:68176261-68176539(+)$1	278	86	90	12.0000
GCUG	chr1:27028483-27028730(+)$1	247	46	50	12.0000
GCUG	chr10:79621397-79621655(-)$1	258	137	141	12.0000
GCUG	chr13:99212309-99212613(-)$1	304	135	139	12.0000
GCUG	chr7:117824344-117824614(+)$1	270	132	136	12.0000
gcug	chr16:89583460-89583744(+)$1	284	68	72	12.0000
GCUG	chr6:109764643-109764923(+)$1	280	128	132	12.0000
GCUG	chr7:158458623-158458868(-)$1	245	98	102	12.0000
gcug	chr4:123910386-123910668(+)$1	282	64	68	12.0000
gcug	chr7:77450676-77450984(+)$1	308	42	46	12.0000
GCUG	chr16:89473776-89474032(-)$1	256	116	120	12.0000
GCUG	chr4:707133-707391(+)$1	258	64	68	12.0000
GCUG	chr7:158703049-158703448(+)$1	399	8	12	12.0000
GCUG	chr1:2162704-2163001(+)$1	297	18	22	12.0000
GCUG	chr16:18798693-18798948(-)$1	255	9	13	12.0000
GCUG	chr22:22899641-22899876(-)$1	235	101	105	12.0000
gcug	chr4:151897932-151898208(-)$1	276	130	134	12.0000
GCUG	chr6:15421930-15422245(+)$1	315	128	132	12.0000
GCUG	chr19:29021078-29021348(-)$1	270	232	236	12.0000
gcug	chr16:47584504-47584797(+)$1	293	52	56	12.0000
gcug	chr1:143452790-143453077(-)$1	287	11	15	12.0000
GCUG	chr20:17606540-17606819(-)$1	279	49	53	12.0000
GCUG	chr22:20106267-20106536(+)$1	269	81	85	12.0000
GCUG	chr1:109955974-109956218(-)$1	244	213	217	12.0000
gcug	chr8:6592177-6592445(+)$1	268	21	25	12.0000
gcug	chr16:81027600-81027868(-)$1	268	172	176	12.0000
GCUG	chr7:127453406-127453647(+)$1	241	45	49	12.0000
GCUG	chr12:116602251-116602545(-)$1	294	87	91	12.0000
GCUG	chr2:74691996-74692401(-)$1	405	147	151	12.0000
GCUG	chr2:10443305-10443553(+)$1	248	13	17	12.0000
GCUG	chr22:23579332-23579595(+)$1	263	90	94	12.0000
GCUG	chr11:68317691-68317939(+)$1	248	114	118	12.0000
gcug	chr6:143497124-143497386(+)$1	262	25	29	12.0000
GCUG	chr9:95016994-95017305(-)$1	311	60	64	12.0000

#otherMatches

#Struct PSSM
ccmm	chr3:56644762-56645035(+)$1	273	144	148	12.0000
III:	chr5:37489092-37489447(+)$1	355	125	129	12.0000
iii:	chr1:208034831-208035090(-)$1	259	184	188	12.0000
##ff	chr5:882232-882477(-)$1	245	106	110	12.0000
e[cc	chr2:132398989-132399241(+)$1	252	25	29	12.0000
dddd	chr12:132477091-132477345(+)$1	254	119	123	12.0000
eee]	chr22:20078366-20078598(+)$1	232	96	100	12.0000
hhhh	chr5:1809367-1809708(+)$1	341	10	14	12.0000
EKKC	chr12:132380344-132380620(+)$1	276	38	42	12.0000
eeee	chr10:1154992-1155246(+)$1	254	13	17	12.0000
MMMG	chr2:242592689-242592981(+)$1	292	116	120	12.0000
99dd	chr1:16219720-16220009(+)$1	289	140	144	12.0000
====	chr4:1236533-1236833(-)$1	300	49	53	12.0000
eedd	chr5:180618594-180618805(-)$1	211	109	113	12.0000
JJJJ	chr5:177632140-177632392(+)$1	252	11	15	12.0000
eeeg	chr6:150518596-150518861(+)$1	265	4	8	12.0000
DDDD	chr9:134295181-134295478(+)$1	297	22	26	12.0000
eecc	chr5:865963-866232(-)$1	269	51	55	12.0000
hhh"	chr5:1625034-1625297(-)$1	263	31	35	12.0000
oohh	chr11:2973854-2974095(-)$1	241	80	84	12.0000
ccmm	chr4:32072872-32073134(+)$1	262	68	72	12.0000
dddn	chr6:45273933-45274191(-)$1	258	145	149	12.0000
gg::	chr6:161477243-161477516(+)$1	273	129	133	12.0000
CC==	chr11:48050535-48050873(+)$1	338	29	33	12.0000
DDDD	chr9:5019901-5020193(+)$1	292	154	158	12.0000
dddd	chr4:1906976-1907221(+)$1	245	164	168	12.0000
dd[f	chr2:231211816-231212073(+)$1	257	55	59	12.0000
JJJJ	chr7:156496962-156497216(-)$1	254	36	40	12.0000
hhhh	chr3:197477071-197477332(+)$1	261	55	59	12.0000
"ddd	chr3:41242379-41242658(+)$1	279	35	39	12.0000
GGGG	chr22:17109802-17110026(+)$1	224	136	140	12.0000
dd[d	chr19:18632304-18632560(-)$1	256	51	55	12.0000
cccd	chr17:80866136-80866390(+)$1	254	49	53	12.0000
eeA{	chr12:132485484-132485748(+)$1	264	30	34	12.0000
CC}D	chr1:2191179-2191444(+)$1	265	124	128	12.0000
CYYC	chr10:135221503-135221774(+)$1	271	161	165	12.0000
:::E	chr19:10474060-10474292(-)$1	232	36	40	12.0000
h!!b	chr16:88729723-88730005(+)$1	282	91	95	12.0000
:eee	chr16:47132926-47133181(-)$1	255	66	70	12.0000
eeeu	chr1:167931368-167931650(+)$1	282	35	39	12.0000
FFFL	chr7:24657419-24657668(+)$1	249	6	10	12.0000
ff[a	chr17:79877655-79877953(-)$1	298	36	40	12.0000
dddd	chr4:48773535-48773831(-)$1	296	9	13	12.0000
F::a	chr17:29632339-29632585(+)$1	246	37	41	12.0000
fffd	chr5:133511914-133512204(-)$1	290	11	15	12.0000
ggg[	chr5:93995249-93995565(+)$1	316	122	126	12.0000
dddd	chr21:38834413-38834670(+)$1	257	97	101	12.0000
c[ff	chr12:132554141-132554437(+)$1	296	142	146	12.0000
iibb	chr3:196304350-196304621(+)$1	271	218	222	12.0000
bb22	chr7:155573699-155574018(+)$1	319	118	122	12.0000
dd[d	chr11:1000912-1001148(+)$1	236	63	67	12.0000
iiii	chr16:68176261-68176539(+)$1	278	86	90	12.0000
eee[	chr1:27028483-27028730(+)$1	247	46	50	12.0000
dddd	chr10:79621397-79621655(-)$1	258	137	141	12.0000
eee]	chr13:99212309-99212613(-)$1	304	135	139	12.0000
fff:	chr7:117824344-117824614(+)$1	270	132	136	12.0000
!!cc	chr16:89583460-89583744(+)$1	284	68	72	12.0000
cc[=	chr6:109764643-109764923(+)$1	280	128	132	12.0000
b555	chr7:158458623-158458868(-)$1	245	98	102	12.0000
ee66	chr4:123910386-123910668(+)$1	282	64	68	12.0000
ii[a	chr7:77450676-77450984(+)$1	308	42	46	12.0000
ffff	chr16:89473776-89474032(-)$1	256	116	120	12.0000
====	chr4:707133-707391(+)$1	258	64	68	12.0000
ffff	chr7:158703049-158703448(+)$1	399	8	12	12.0000
Hddd	chr1:2162704-2163001(+)$1	297	18	22	12.0000
bb[=	chr16:18798693-18798948(-)$1	255	9	13	12.0000
ffff	chr22:22899641-22899876(-)$1	235	101	105	12.0000
BKKD	chr4:151897932-151898208(-)$1	276	130	134	12.0000
EEEE	chr6:15421930-15422245(+)$1	315	128	132	12.0000
eeee	chr19:29021078-29021348(-)$1	270	232	236	12.0000
cccd	chr16:47584504-47584797(+)$1	293	52	56	12.0000
dddd	chr1:143452790-143453077(-)$1	287	11	15	12.0000
cc!!	chr20:17606540-17606819(-)$1	279	49	53	12.0000
g22f	chr22:20106267-20106536(+)$1	269	81	85	12.0000
4ddd	chr1:109955974-109956218(-)$1	244	213	217	12.0000
FFFE	chr8:6592177-6592445(+)$1	268	21	25	12.0000
ccc[	chr16:81027600-81027868(-)$1	268	172	176	12.0000
ffff	chr7:127453406-127453647(+)$1	241	45	49	12.0000
:::e	chr12:116602251-116602545(-)$1	294	87	91	12.0000
====	chr2:74691996-74692401(-)$1	405	147	151	12.0000
d[ff	chr2:10443305-10443553(+)$1	248	13	17	12.0000
[aoo	chr22:23579332-23579595(+)$1	263	90	94	12.0000
%%%e	chr11:68317691-68317939(+)$1	248	114	118	12.0000
bb::	chr6:143497124-143497386(+)$1	262	25	29	12.0000
DKKE	chr9:95016994-95017305(-)$1	311	60	64	12.0000

#DB
((..	chr3:56644762-56645035(+)$1	1	144	148	12.0000
))).	chr5:37489092-37489447(+)$1	1	125	129	12.0000
))).	chr1:208034831-208035090(-)$1	1	184	188	12.0000
..((	chr5:882232-882477(-)$1	1	106	110	12.0000
(.((	chr2:132398989-132399241(+)$1	1	25	29	12.0000
((((	chr12:132477091-132477345(+)$1	1	119	123	12.0000
))).	chr22:20078366-20078598(+)$1	1	96	100	12.0000
((((	chr5:1809367-1809708(+)$1	1	10	14	12.0000
(..(	chr12:132380344-132380620(+)$1	1	38	42	12.0000
((((	chr10:1154992-1155246(+)$1	1	13	17	12.0000
...(	chr2:242592689-242592981(+)$1	1	116	120	12.0000
..))	chr1:16219720-16220009(+)$1	1	140	144	12.0000
))))	chr4:1236533-1236833(-)$1	1	49	53	12.0000
))((	chr5:180618594-180618805(-)$1	1	109	113	12.0000
((((	chr5:177632140-177632392(+)$1	1	11	15	12.0000
((((	chr6:150518596-150518861(+)$1	1	4	8	12.0000
((((	chr9:134295181-134295478(+)$1	1	22	26	12.0000
((((	chr5:865963-866232(-)$1	1	51	55	12.0000
(((.	chr5:1625034-1625297(-)$1	1	31	35	12.0000
..))	chr11:2973854-2974095(-)$1	1	80	84	12.0000
((..	chr4:32072872-32073134(+)$1	1	68	72	12.0000
(((.	chr6:45273933-45274191(-)$1	1	145	149	12.0000
))..	chr6:161477243-161477516(+)$1	1	129	133	12.0000
((((	chr11:48050535-48050873(+)$1	1	29	33	12.0000
))))	chr9:5019901-5020193(+)$1	1	154	158	12.0000
))))	chr4:1906976-1907221(+)$1	1	164	168	12.0000
((.(	chr2:231211816-231212073(+)$1	1	55	59	12.0000
((((	chr7:156496962-156497216(-)$1	1	36	40	12.0000
))))	chr3:197477071-197477332(+)$1	1	55	59	12.0000
.(((	chr3:41242379-41242658(+)$1	1	35	39	12.0000
))))	chr22:17109802-17110026(+)$1	1	136	140	12.0000
((.(	chr19:18632304-18632560(-)$1	1	51	55	12.0000
((((	chr17:80866136-80866390(+)$1	1	49	53	12.0000
))(.	chr12:132485484-132485748(+)$1	1	30	34	12.0000
)).)	chr1:2191179-2191444(+)$1	1	124	128	12.0000
)..)	chr10:135221503-135221774(+)$1	1	161	165	12.0000
...(	chr19:10474060-10474292(-)$1	1	36	40	12.0000
(..(	chr16:88729723-88730005(+)$1	1	91	95	12.0000
.(((	chr16:47132926-47133181(-)$1	1	66	70	12.0000
(((.	chr1:167931368-167931650(+)$1	1	35	39	12.0000
(((.	chr7:24657419-24657668(+)$1	1	6	10	12.0000
((.(	chr17:79877655-79877953(-)$1	1	36	40	12.0000
))))	chr4:48773535-48773831(-)$1	1	9	13	12.0000
(..(	chr17:29632339-29632585(+)$1	1	37	41	12.0000
((((	chr5:133511914-133512204(-)$1	1	11	15	12.0000
(((.	chr5:93995249-93995565(+)$1	1	122	126	12.0000
((((	chr21:38834413-38834670(+)$1	1	97	101	12.0000
(.((	chr12:132554141-132554437(+)$1	1	142	146	12.0000
))))	chr3:196304350-196304621(+)$1	1	218	222	12.0000
))..	chr7:155573699-155574018(+)$1	1	118	122	12.0000
((.(	chr11:1000912-1001148(+)$1	1	63	67	12.0000
))))	chr16:68176261-68176539(+)$1	1	86	90	12.0000
(((.	chr1:27028483-27028730(+)$1	1	46	50	12.0000
((((	chr10:79621397-79621655(-)$1	1	137	141	12.0000
))).	chr13:99212309-99212613(-)$1	1	135	139	12.0000
))).	chr7:117824344-117824614(+)$1	1	132	136	12.0000
..((	chr16:89583460-89583744(+)$1	1	68	72	12.0000
((.(	chr6:109764643-109764923(+)$1	1	128	132	12.0000
)...	chr7:158458623-158458868(-)$1	1	98	102	12.0000
))..	chr4:123910386-123910668(+)$1	1	64	68	12.0000
((.(	chr7:77450676-77450984(+)$1	1	42	46	12.0000
((((	chr16:89473776-89474032(-)$1	1	116	120	12.0000
((((	chr4:707133-707391(+)$1	1	64	68	12.0000
((((	chr7:158703049-158703448(+)$1	1	8	12	12.0000
((((	chr1:2162704-2163001(+)$1	1	18	22	12.0000
((.(	chr16:18798693-18798948(-)$1	1	9	13	12.0000
))))	chr22:22899641-22899876(-)$1	1	101	105	12.0000
(..(	chr4:151897932-151898208(-)$1	1	130	134	12.0000
((((	chr6:15421930-15422245(+)$1	1	128	132	12.0000
))))	chr19:29021078-29021348(-)$1	1	232	236	12.0000
((((	chr16:47584504-47584797(+)$1	1	52	56	12.0000
))))	chr1:143452790-143453077(-)$1	1	11	15	12.0000
((..	chr20:17606540-17606819(-)$1	1	49	53	12.0000
)..)	chr22:20106267-20106536(+)$1	1	81	85	12.0000
.)))	chr1:109955974-109956218(-)$1	1	213	217	12.0000
((((	chr8:6592177-6592445(+)$1	1	21	25	12.0000
(((.	chr16:81027600-81027868(-)$1	1	172	176	12.0000
))))	chr7:127453406-127453647(+)$1	1	45	49	12.0000
...(	chr12:116602251-116602545(-)$1	1	87	91	12.0000
((((	chr2:74691996-74692401(-)$1	1	147	151	12.0000
(.((	chr2:10443305-10443553(+)$1	1	13	17	12.0000
.(..	chr22:23579332-23579595(+)$1	1	90	94	12.0000
...(	chr11:68317691-68317939(+)$1	1	114	118	12.0000
))..	chr6:143497124-143497386(+)$1	1	25	29	12.0000
(..(	chr9:95016994-95017305(-)$1	1	60	64	12.0000

#PSSM
G : 0.63	g : 0.36	
C : 0.63	c : 0.36	
U : 0.63	u : 0.36	
G : 0.62	g : 0.37	

#score	1020.0000000000001
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_UTR_m1_run1.nuc.txt

#NT
UGCA	chr19:46285648-46285901(-)$1	253	189	193	12.0000
UGCA	chr10:52220196-52220574(-)$1	378	120	124	12.0000
UGCA	chr2:190719646-190720013(+)$1	367	151	155	12.0000
UGCA	chr1:24973588-24973838(+)$1	250	93	97	12.0000
UGCA	chr2:118694114-118694411(-)$1	297	25	29	12.0000
UGCA	chr1:27658470-27658771(+)$1	301	9	13	12.0000
UGCA	chr16:18801354-18801646(-)$1	292	70	74	12.0000
UGCA	chr4:17832631-17832849(+)$1	218	77	81	12.0000
UGCA	chr15:72638352-72638657(-)$1	305	208	212	12.0000
UGCA	chr12:133218295-133218546(-)$1	251	104	108	12.0000
UGCA	chr3:47458474-47458712(-)$1	238	45	49	12.0000
UGCA	chr12:120901581-120901855(-)$1	274	5	9	12.0000
UGCA	chr19:19291349-19291598(-)$1	249	9	13	12.0000
UGCA	chr6:36937500-36937745(-)$1	245	11	15	12.0000
UGCA	chr7:100457737-100458045(+)$1	308	112	116	12.0000
UGCA	chr6:32137516-32137837(-)$1	321	67	71	12.0000
UGCA	chr7:158496234-158496500(-)$1	266	197	201	12.0000
UGCA	chr3:141712191-141712506(-)$1	315	265	269	12.0000
ugca	chr4:26859707-26859941(+)$1	234	67	71	12.0000
UGCA	chr14:35761659-35762039(+)$1	380	254	258	12.0000
UGCA	chr11:129754500-129754766(-)$1	266	122	126	12.0000
UGCA	chr11:61187922-61188180(-)$1	258	206	210	12.0000
UGCA	chr6:36447358-36447624(+)$1	266	87	91	12.0000
UGCA	chr16:69724884-69725134(+)$1	250	125	129	12.0000
UGCA	chr1:112303768-112304038(+)$1	270	128	132	12.0000
UGCA	chr17:38297114-38297398(+)$1	284	70	74	12.0000
UGCA	chr11:86055663-86055913(+)$1	250	218	222	12.0000
UGCA	chr22:19379480-19379730(-)$1	250	133	137	12.0000
UGCA	chr5:54683805-54684119(+)$1	314	85	89	12.0000
UGCA	chr20:34319584-34319852(-)$1	268	156	160	12.0000
UGCA	chr4:37848600-37848936(+)$1	336	296	300	12.0000
UGCA	chr19:1356992-1357239(+)$1	247	76	80	12.0000
UGCA	chr17:38188770-38189002(-)$1	232	226	230	12.0000
UGCA	chr22:50696134-50696409(-)$1	275	149	153	12.0000
UGCA	chr7:127013267-127013540(-)$1	273	8	12	12.0000
UGCA	chr5:176737526-176737807(-)$1	281	114	118	12.0000
UGCA	chr15:49926869-49927150(+)$1	281	34	38	12.0000
UGCA	chr12:124107075-124107287(-)$1	212	38	42	12.0000
UGCA	chr17:25634898-25635151(+)$1	253	12	16	12.0000
UGCA	chr12:56742999-56743231(-)$1	232	136	140	12.0000
UGCA	chr5:137761155-137761430(+)$1	275	46	50	12.0000
UGCA	chrX:153056122-153056368(-)$1	246	167	171	12.0000
UGCA	chr7:2269663-2269941(-)$1	278	102	106	12.0000
ugca	chr6:127607180-127607455(+)$1	275	137	141	12.0000
UGCA	chr12:54678032-54678296(+)$1	264	148	152	12.0000
UGCA	chr1:2441109-2441388(-)$1	279	51	55	12.0000
UGCA	chr22:22312688-22312935(-)$1	247	77	81	12.0000
UGCA	chr3:9726786-9727045(+)$1	259	251	255	12.0000
UGCA	chr11:59562915-59563191(+)$1	276	144	148	12.0000
UGCA	chr18:12794115-12794431(-)$1	316	0	4	12.0000
UGCA	chr2:27534615-27534889(-)$1	274	65	69	12.0000
UGCA	chr2:86397703-86397984(-)$1	281	11	15	12.0000
UGCA	chr7:141296334-141296670(+)$1	336	56	60	12.0000
UGCA	chr1:24021197-24021447(+)$1	250	175	179	12.0000
UGCA	chr9:111714535-111714840(-)$1	305	74	78	12.0000
UGCA	chr12:57926656-57926958(-)$1	302	164	168	12.0000
UGCA	chr1:45213056-45213294(+)$1	238	19	23	12.0000
UGCA	chr2:242255408-242255715(+)$1	307	276	280	12.0000
UGCA	chr1:1250613-1250913(-)$1	300	186	190	12.0000
UGCA	chr10:64937285-64937566(-)$1	281	103	107	12.0000
UGCA	chr12:54582580-54582838(-)$1	258	240	244	12.0000
UGCA	chr11:126146112-126146392(+)$1	280	146	150	12.0000
UGCA	chr2:234186210-234186487(+)$1	277	5	9	12.0000
UGCA	chr4:57340512-57340755(+)$1	243	81	85	12.0000
UGCA	chr20:32247715-32247975(-)$1	260	3	7	12.0000
UGCA	chr16:2014632-2014907(-)$1	275	118	122	12.0000
UGCA	chr7:5568568-5568822(-)$1	254	168	172	12.0000
UGCA	chr19:17183937-17184219(-)$1	282	69	73	12.0000
UGCA	chr12:108919714-108919983(-)$1	269	171	175	12.0000
UGCA	chr5:175812051-175812312(-)$1	261	185	189	12.0000
UGCA	chr22:42991399-42991651(-)$1	252	77	81	12.0000
UGCA	chr9:134349010-134349265(+)$1	255	31	35	12.0000
UGCA	chr1:16579770-16580043(-)$1	273	7	11	12.0000
UGCA	chr11:77330540-77330795(-)$1	255	104	108	12.0000
UGCA	chrX:152602034-152602325(+)$1	291	10	14	12.0000
UGCA	chr17:40724950-40725229(-)$1	279	62	66	12.0000

#otherMatches

#Struct PSSM
bb[f	chr17:40855581-40855863(-)$1	282	68	72	12.0000
A}EE	chr19:46285648-46285901(-)$1	253	189	193	12.0000
tttt	chr10:52220196-52220574(-)$1	378	120	124	12.0000
e666	chr2:190719646-190720013(+)$1	367	151	155	12.0000
ffff	chr1:24973588-24973838(+)$1	250	93	97	12.0000
ddd[	chr2:118694114-118694411(-)$1	297	25	29	12.0000
EEEE	chr1:27658470-27658771(+)$1	301	9	13	12.0000
cqqq	chr16:18801354-18801646(-)$1	292	70	74	12.0000
cccc	chr4:17832631-17832849(+)$1	218	77	81	12.0000
DDDD	chr15:72638352-72638657(-)$1	305	208	212	12.0000
dddd	chr12:133218295-133218546(-)$1	251	104	108	12.0000
HHHH	chr3:47458474-47458712(-)$1	238	45	49	12.0000
::::	chr12:120901581-120901855(-)$1	274	5	9	12.0000
ffff	chr19:19291349-19291598(-)$1	249	9	13	12.0000
oddd	chr6:36937500-36937745(-)$1	245	11	15	12.0000
ee!!	chr7:100457737-100458045(+)$1	308	112	116	12.0000
6ddd	chr6:32137516-32137837(-)$1	321	67	71	12.0000
B}BB	chr7:158496234-158496500(-)$1	266	197	201	12.0000
ccc!	chr3:141712191-141712506(-)$1	315	265	269	12.0000
fccc	chr4:26859707-26859941(+)$1	234	67	71	12.0000
FFF{	chr14:35761659-35762039(+)$1	380	254	258	12.0000
hhhh	chr11:129754500-129754766(-)$1	266	122	126	12.0000
fff[	chr11:61187922-61188180(-)$1	258	206	210	12.0000
hh::	chr6:36447358-36447624(+)$1	266	87	91	12.0000
ffff	chr16:69724884-69725134(+)$1	250	125	129	12.0000
hh""	chr1:112303768-112304038(+)$1	270	128	132	12.0000
eeee	chr17:38297114-38297398(+)$1	284	70	74	12.0000
::II	chr11:86055663-86055913(+)$1	250	218	222	12.0000
hmmm	chr22:19379480-19379730(-)$1	250	133	137	12.0000
eeoo	chr5:54683805-54684119(+)$1	314	85	89	12.0000
fff:	chr20:34319584-34319852(-)$1	268	156	160	12.0000
]bb:	chr4:37848600-37848936(+)$1	336	296	300	12.0000
!bb"	chr19:1356992-1357239(+)$1	247	76	80	12.0000
}DDD	chr17:38188770-38189002(-)$1	232	226	230	12.0000
]bb:	chr22:50696134-50696409(-)$1	275	149	153	12.0000
{DDD	chr7:127013267-127013540(-)$1	273	8	12	12.0000
ccc]	chr5:176737526-176737807(-)$1	281	114	118	12.0000
dddm	chr15:49926869-49927150(+)$1	281	34	38	12.0000
mbbf	chr12:124107075-124107287(-)$1	212	38	42	12.0000
hhhh	chr17:25634898-25635151(+)$1	253	12	16	12.0000
DDD:	chr12:56742999-56743231(-)$1	232	136	140	12.0000
ffff	chr5:137761155-137761430(+)$1	275	46	50	12.0000
=fff	chrX:153056122-153056368(-)$1	246	167	171	12.0000
b"""	chr7:2269663-2269941(-)$1	278	102	106	12.0000
eeee	chr6:127607180-127607455(+)$1	275	137	141	12.0000
qbb]	chr12:54678032-54678296(+)$1	264	148	152	12.0000
GGGG	chr1:2441109-2441388(-)$1	279	51	55	12.0000
ffff	chr22:22312688-22312935(-)$1	247	77	81	12.0000
:EEE	chr3:9726786-9727045(+)$1	259	251	255	12.0000
qqqq	chr11:59562915-59563191(+)$1	276	144	148	12.0000
:::c	chr18:12794115-12794431(-)$1	316	0	4	12.0000
FFFF	chr2:27534615-27534889(-)$1	274	65	69	12.0000
EE::	chr2:86397703-86397984(-)$1	281	11	15	12.0000
]ddd	chr7:141296334-141296670(+)$1	336	56	60	12.0000
nndd	chr1:24021197-24021447(+)$1	250	175	179	12.0000
ff::	chr9:111714535-111714840(-)$1	305	74	78	12.0000
ee::	chr12:57926656-57926958(-)$1	302	164	168	12.0000
HHHH	chr1:45213056-45213294(+)$1	238	19	23	12.0000
00==	chr2:242255408-242255715(+)$1	307	276	280	12.0000
::::	chr1:1250613-1250913(-)$1	300	186	190	12.0000
dd44	chr10:64937285-64937566(-)$1	281	103	107	12.0000
ddd2	chr12:54582580-54582838(-)$1	258	240	244	12.0000
eee#	chr11:126146112-126146392(+)$1	280	146	150	12.0000
CCC{	chr2:234186210-234186487(+)$1	277	5	9	12.0000
dddd	chr4:57340512-57340755(+)$1	243	81	85	12.0000
eeeq	chr20:32247715-32247975(-)$1	260	3	7	12.0000
ppgg	chr16:2014632-2014907(-)$1	275	118	122	12.0000
]ddd	chr7:5568568-5568822(-)$1	254	168	172	12.0000
7ccc	chr19:17183937-17184219(-)$1	282	69	73	12.0000
::::	chr12:108919714-108919983(-)$1	269	171	175	12.0000
ddd:	chr5:175812051-175812312(-)$1	261	185	189	12.0000
ddd:	chr22:42991399-42991651(-)$1	252	77	81	12.0000
!ddd	chr9:134349010-134349265(+)$1	255	31	35	12.0000
obb:	chr1:16579770-16580043(-)$1	273	7	11	12.0000
[a[c	chr11:77330540-77330795(-)$1	255	104	108	12.0000
ee$$	chrX:152602034-152602325(+)$1	291	10	14	12.0000
gCCC	chr17:40724950-40725229(-)$1	279	62	66	12.0000

#DB
((.(	chr17:40855581-40855863(-)$1	1	68	72	12.0000
).))	chr19:46285648-46285901(-)$1	1	189	193	12.0000
....	chr10:52220196-52220574(-)$1	1	120	124	12.0000
)...	chr2:190719646-190720013(+)$1	1	151	155	12.0000
((((	chr1:24973588-24973838(+)$1	1	93	97	12.0000
(((.	chr2:118694114-118694411(-)$1	1	25	29	12.0000
((((	chr1:27658470-27658771(+)$1	1	9	13	12.0000
(...	chr16:18801354-18801646(-)$1	1	70	74	12.0000
((((	chr4:17832631-17832849(+)$1	1	77	81	12.0000
))))	chr15:72638352-72638657(-)$1	1	208	212	12.0000
((((	chr12:133218295-133218546(-)$1	1	104	108	12.0000
((((	chr3:47458474-47458712(-)$1	1	45	49	12.0000
....	chr12:120901581-120901855(-)$1	1	5	9	12.0000
((((	chr19:19291349-19291598(-)$1	1	9	13	12.0000
.)))	chr6:36937500-36937745(-)$1	1	11	15	12.0000
((..	chr7:100457737-100458045(+)$1	1	112	116	12.0000
.)))	chr6:32137516-32137837(-)$1	1	67	71	12.0000
).))	chr7:158496234-158496500(-)$1	1	197	201	12.0000
(((.	chr3:141712191-141712506(-)$1	1	265	269	12.0000
)(((	chr4:26859707-26859941(+)$1	1	67	71	12.0000
(((.	chr14:35761659-35762039(+)$1	1	254	258	12.0000
))))	chr11:129754500-129754766(-)$1	1	122	126	12.0000
(((.	chr11:61187922-61188180(-)$1	1	206	210	12.0000
))..	chr6:36447358-36447624(+)$1	1	87	91	12.0000
))))	chr16:69724884-69725134(+)$1	1	125	129	12.0000
((..	chr1:112303768-112304038(+)$1	1	128	132	12.0000
))))	chr17:38297114-38297398(+)$1	1	70	74	12.0000
..))	chr11:86055663-86055913(+)$1	1	218	222	12.0000
(...	chr22:19379480-19379730(-)$1	1	133	137	12.0000
((..	chr5:54683805-54684119(+)$1	1	85	89	12.0000
))).	chr20:34319584-34319852(-)$1	1	156	160	12.0000
.)).	chr4:37848600-37848936(+)$1	1	296	300	12.0000
.((.	chr19:1356992-1357239(+)$1	1	76	80	12.0000
.)))	chr17:38188770-38189002(-)$1	1	226	230	12.0000
.)).	chr22:50696134-50696409(-)$1	1	149	153	12.0000
.(((	chr7:127013267-127013540(-)$1	1	8	12	12.0000
))).	chr5:176737526-176737807(-)$1	1	114	118	12.0000
(((.	chr15:49926869-49927150(+)$1	1	34	38	12.0000
.)))	chr12:124107075-124107287(-)$1	1	38	42	12.0000
((((	chr17:25634898-25635151(+)$1	1	12	16	12.0000
))).	chr12:56742999-56743231(-)$1	1	136	140	12.0000
((((	chr5:137761155-137761430(+)$1	1	46	50	12.0000
))))	chrX:153056122-153056368(-)$1	1	167	171	12.0000
(...	chr7:2269663-2269941(-)$1	1	102	106	12.0000
((((	chr6:127607180-127607455(+)$1	1	137	141	12.0000
.)).	chr12:54678032-54678296(+)$1	1	148	152	12.0000
((((	chr1:2441109-2441388(-)$1	1	51	55	12.0000
((((	chr22:22312688-22312935(-)$1	1	77	81	12.0000
.)))	chr3:9726786-9727045(+)$1	1	251	255	12.0000
....	chr11:59562915-59563191(+)$1	1	144	148	12.0000
...(	chr18:12794115-12794431(-)$1	1	0	4	12.0000
((((	chr2:27534615-27534889(-)$1	1	65	69	12.0000
((..	chr2:86397703-86397984(-)$1	1	11	15	12.0000
.)))	chr7:141296334-141296670(+)$1	1	56	60	12.0000
..))	chr1:24021197-24021447(+)$1	1	175	179	12.0000
))..	chr9:111714535-111714840(-)$1	1	74	78	12.0000
))..	chr12:57926656-57926958(-)$1	1	164	168	12.0000
((((	chr1:45213056-45213294(+)$1	1	19	23	12.0000
..))	chr2:242255408-242255715(+)$1	1	276	280	12.0000
....	chr1:1250613-1250913(-)$1	1	186	190	12.0000
))..	chr10:64937285-64937566(-)$1	1	103	107	12.0000
))).	chr12:54582580-54582838(-)$1	1	240	244	12.0000
(((.	chr11:126146112-126146392(+)$1	1	146	150	12.0000
(((.	chr2:234186210-234186487(+)$1	1	5	9	12.0000
))))	chr4:57340512-57340755(+)$1	1	81	85	12.0000
(((.	chr20:32247715-32247975(-)$1	1	3	7	12.0000
..))	chr16:2014632-2014907(-)$1	1	118	122	12.0000
.)))	chr7:5568568-5568822(-)$1	1	168	172	12.0000
.)))	chr19:17183937-17184219(-)$1	1	69	73	12.0000
....	chr12:108919714-108919983(-)$1	1	171	175	12.0000
))).	chr5:175812051-175812312(-)$1	1	185	189	12.0000
))).	chr22:42991399-42991651(-)$1	1	77	81	12.0000
.(((	chr9:134349010-134349265(+)$1	1	31	35	12.0000
.)).	chr1:16579770-16580043(-)$1	1	7	11	12.0000
.(.(	chr11:77330540-77330795(-)$1	1	104	108	12.0000
((..	chrX:152602034-152602325(+)$1	1	10	14	12.0000
))))	chr17:40724950-40725229(-)$1	1	62	66	12.0000

#PSSM
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	
A : 0.97	a : 0.02	

#score	924.0000000000001
#seq	77
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_transcript_m2_run1.nuc.txt

#NT
GAGG	chr21:46835400-46835715(+)$1	315	0	4	12.0000
GAGG	chr2:3471622-3471883(+)$1	261	8	12	12.0000
GAGG	chr19:954284-954527(+)$1	243	95	99	12.0000
GAGG	chr2:202002643-202002949(+)$1	306	251	255	12.0000
GAGG	chr16:89346795-89347072(-)$1	277	156	160	12.0000
GAGG	chr21:47559167-47559375(-)$1	208	20	24	12.0000
GAGG	chr19:2270513-2270848(+)$1	335	159	163	12.0000
GAGG	chr20:61277255-61277496(+)$1	241	81	85	12.0000
GAGG	chr20:62312797-62313082(+)$1	285	119	123	12.0000
GAGG	chr2:242659940-242660264(+)$1	324	7	11	12.0000
GAGG	chr1:245026472-245026751(-)$1	279	121	125	12.0000
gagg	chr1:143163533-143163844(-)$1	311	151	155	12.0000
GAGG	chr7:1154869-1155112(-)$1	243	14	18	12.0000
GAGG	chr5:154135525-154135738(+)$1	213	68	72	12.0000
GAGG	chr7:158319715-158320014(-)$1	299	38	42	12.0000
GAGG	chr14:54421349-54421633(-)$1	284	97	101	12.0000
GAGG	chr7:222160-222466(+)$1	306	4	8	12.0000
GAGG	chr16:89433300-89433627(-)$1	327	52	56	12.0000
GAGG	chr11:607176-607427(+)$1	251	79	83	12.0000
GAGG	chr7:1140220-1140498(-)$1	278	112	116	12.0000
GAGG	chr16:81490326-81490613(+)$1	287	83	87	12.0000
GAGG	chr8:144671251-144671480(-)$1	229	33	37	12.0000
GAGG	chr8:121679423-121679684(-)$1	261	92	96	12.0000
GAGG	chr19:5077956-5078248(+)$1	292	70	74	12.0000
GAGG	chr3:196693142-196693383(-)$1	241	87	91	12.0000
GAGG	chr7:157866613-157866884(-)$1	271	8	12	12.0000
gagg	chr6:3320190-3320430(-)$1	240	13	17	12.0000
GAGG	chr22:45123179-45123395(+)$1	216	46	50	12.0000
GAGG	chr16:89604747-89605046(+)$1	299	81	85	12.0000
GAGG	chr3:12947815-12948096(-)$1	281	49	53	12.0000
GAGG	chr14:19889665-19889936(-)$1	271	119	123	12.0000
GAGG	chr4:763946-764202(-)$1	256	28	32	12.0000
GAGG	chr22:47566934-47567196(+)$1	262	53	57	12.0000
GAGG	chr9:136686814-136687098(-)$1	284	1	5	12.0000
GAGG	chr7:158317762-158318014(-)$1	252	93	97	12.0000
GAGG	chr22:21799735-21800003(+)$1	268	118	122	12.0000
GAGG	chr8:608648-608882(-)$1	234	10	14	12.0000
GAGG	chr16:591196-591450(+)$1	254	48	52	12.0000
GAGG	chr16:89346251-89346497(-)$1	246	100	104	12.0000
gagg	chr6:170123909-170124170(-)$1	261	17	21	12.0000
GAGG	chr4:847219-847533(-)$1	314	40	44	12.0000
GAGG	chr14:105909146-105909390(+)$1	244	83	87	12.0000
GAGG	chr17:79954981-79955247(+)$1	266	10	14	12.0000
GAGG	chr1:2113773-2114039(+)$1	266	50	54	12.0000
GAGG	chr17:74303290-74303593(-)$1	303	27	31	12.0000
GAGG	chr7:158341503-158341734(-)$1	231	27	31	12.0000
GAGG	chr16:1366255-1366510(+)$1	255	37	41	12.0000
GAGG	chr17:74380016-74380295(+)$1	279	96	100	12.0000
GAGG	chr16:585125-585386(+)$1	261	4	8	12.0000
GAGG	chr14:59931821-59932119(-)$1	298	146	150	12.0000
GAGG	chr8:144940403-144940695(-)$1	292	63	67	12.0000
GAGG	chr7:1151292-1151539(-)$1	247	2	6	12.0000
GAGG	chr3:196695109-196695376(-)$1	267	48	52	12.0000
GAGG	chr22:47458472-47458721(+)$1	249	79	83	12.0000
GAGG	chr19:2341103-2341383(+)$1	280	74	78	12.0000
GAGG	chr8:144671550-144671842(-)$1	292	281	285	12.0000
GAGG	chr11:70909511-70909796(-)$1	285	48	52	12.0000
GAGG	chr1:2112948-2113183(+)$1	235	92	96	12.0000
GAGG	chr6:138751709-138751948(-)$1	239	166	170	12.0000
GAGG	chr16:75285405-75285652(-)$1	247	149	153	12.0000
GAGG	chr17:80189632-80189894(+)$1	262	19	23	12.0000
GAGG	chr7:157650557-157650856(-)$1	299	51	55	12.0000
GAGG	chr6:1312808-1313077(+)$1	269	94	98	12.0000
gagg	chr7:282648-282929(+)$1	281	23	27	12.0000
GAGG	chr7:1132623-1132884(-)$1	261	3	7	12.0000
GAGG	chr5:139493572-139493864(+)$1	292	111	115	12.0000
Gagg	chr4:1227621-1227878(-)$1	257	16	20	12.0000
GAGG	chr1:2213920-2214206(+)$1	286	18	22	12.0000
GAGG	chr7:157656947-157657181(-)$1	234	54	58	12.0000
GAGG	chr17:80192375-80192680(+)$1	305	93	97	12.0000
GAGG	chr1:2214784-2215065(+)$1	281	11	15	12.0000
GAGG	chr6:138752171-138752414(-)$1	243	85	89	12.0000
GAGG	chr20:61279694-61279946(+)$1	252	28	32	12.0000
GAGG	chr8:600137-600422(-)$1	285	27	31	12.0000
GAGG	chr2:3470728-3470980(+)$1	252	131	135	12.0000
GAGG	chr7:205756-206001(+)$1	245	37	41	12.0000
GAGG	chr7:1132118-1132411(-)$1	293	81	85	12.0000
gagg	chr7:158340968-158341340(-)$1	372	96	100	12.0000
GAGG	chr17:37618278-37618527(+)$1	249	89	93	12.0000
GAGG	chr7:158351286-158351539(-)$1	253	43	47	12.0000
gagg	chr16:1805976-1806261(+)$1	285	17	21	12.0000
GAGG	chr19:940067-940314(+)$1	247	2	6	12.0000
GAGG	chr7:157768231-157768496(-)$1	265	74	78	12.0000
gagg	chr16:89185736-89186016(+)$1	280	87	91	12.0000
GAGG	chr6:31600096-31600363(+)$1	267	24	28	12.0000
GAGG	chr19:59074102-59074382(+)$1	280	97	101	12.0000
GAGG	chr8:609809-610056(-)$1	247	37	41	12.0000
GAGG	chr17:70536679-70536940(-)$1	261	73	77	12.0000

#otherMatches

#Struct PSSM
ooob	chr9:139715774-139716050(+)$1	276	97	101	12.0000
::::	chr21:46835400-46835715(+)$1	315	0	4	12.0000
iiii	chr2:3471622-3471883(+)$1	261	8	12	12.0000
bb]f	chr19:954284-954527(+)$1	243	95	99	12.0000
c:dd	chr2:202002643-202002949(+)$1	306	251	255	12.0000
eeee	chr16:89346795-89347072(-)$1	277	156	160	12.0000
[ccc	chr21:47559167-47559375(-)$1	208	20	24	12.0000
}BB}	chr19:2270513-2270848(+)$1	335	159	163	12.0000
ffff	chr20:61277255-61277496(+)$1	241	81	85	12.0000
mmmm	chr20:62312797-62313082(+)$1	285	119	123	12.0000
{DDD	chr2:242659940-242660264(+)$1	324	7	11	12.0000
qbb:	chr1:245026472-245026751(-)$1	279	121	125	12.0000
tttt	chr1:143163533-143163844(-)$1	311	151	155	12.0000
IIII	chr7:1154869-1155112(-)$1	243	14	18	12.0000
]bb3	chr5:154135525-154135738(+)$1	213	68	72	12.0000
nnee	chr7:158319715-158320014(-)$1	299	38	42	12.0000
eeee	chr14:54421349-54421633(-)$1	284	97	101	12.0000
ee!!	chr7:222160-222466(+)$1	306	4	8	12.0000
HHHH	chr16:89433300-89433627(-)$1	327	52	56	12.0000
ddd[	chr11:607176-607427(+)$1	251	79	83	12.0000
mbbC	chr7:1140220-1140498(-)$1	278	112	116	12.0000
BB{F	chr16:81490326-81490613(+)$1	287	83	87	12.0000
d[bb	chr8:144671251-144671480(-)$1	229	33	37	12.0000
eeee	chr8:121679423-121679684(-)$1	261	92	96	12.0000
oocc	chr19:5077956-5078248(+)$1	292	70	74	12.0000
hhhh	chr3:196693142-196693383(-)$1	241	87	91	12.0000
i[ff	chr7:157866613-157866884(-)$1	271	8	12	12.0000
!!cc	chr6:3320190-3320430(-)$1	240	13	17	12.0000
HHHd	chr22:45123179-45123395(+)$1	216	46	50	12.0000
{BBg	chr16:89604747-89605046(+)$1	299	81	85	12.0000
bccc	chr3:12947815-12948096(-)$1	281	49	53	12.0000
DD}E	chr14:19889665-19889936(-)$1	271	119	123	12.0000
(((g	chr4:763946-764202(-)$1	256	28	32	12.0000
d:ii	chr22:47566934-47567196(+)$1	262	53	57	12.0000
:::c	chr9:136686814-136687098(-)$1	284	1	5	12.0000
iiii	chr7:158317762-158318014(-)$1	252	93	97	12.0000
D}CC	chr22:21799735-21800003(+)$1	268	118	122	12.0000
FFFF	chr8:608648-608882(-)$1	234	10	14	12.0000
LLEE	chr16:591196-591450(+)$1	254	48	52	12.0000
22bb	chr16:89346251-89346497(-)$1	246	100	104	12.0000
::ff	chr6:170123909-170124170(-)$1	261	17	21	12.0000
:::e	chr4:847219-847533(-)$1	314	40	44	12.0000
nnnn	chr14:105909146-105909390(+)$1	244	83	87	12.0000
ccc[	chr17:79954981-79955247(+)$1	266	10	14	12.0000
eecc	chr1:2113773-2114039(+)$1	266	50	54	12.0000
KKCC	chr17:74303290-74303593(-)$1	303	27	31	12.0000
='''	chr7:158341503-158341734(-)$1	231	27	31	12.0000
LLLC	chr16:1366255-1366510(+)$1	255	37	41	12.0000
h999	chr17:74380016-74380295(+)$1	279	96	100	12.0000
GGGG	chr16:585125-585386(+)$1	261	4	8	12.0000
FFFF	chr14:59931821-59932119(-)$1	298	146	150	12.0000
E{EE	chr8:144940403-144940695(-)$1	292	63	67	12.0000
EEEE	chr7:1151292-1151539(-)$1	247	2	6	12.0000
c]cc	chr3:196695109-196695376(-)$1	267	48	52	12.0000
[ddd	chr22:47458472-47458721(+)$1	249	79	83	12.0000
::DD	chr19:2341103-2341383(+)$1	280	74	78	12.0000
EEE:	chr8:144671550-144671842(-)$1	292	281	285	12.0000
c!!f	chr11:70909511-70909796(-)$1	285	48	52	12.0000
DDD{	chr1:2112948-2113183(+)$1	235	92	96	12.0000
::HH	chr6:138751709-138751948(-)$1	239	166	170	12.0000
d!!d	chr16:75285405-75285652(-)$1	247	149	153	12.0000
JJJJ	chr17:80189632-80189894(+)$1	262	19	23	12.0000
GGGG	chr7:157650557-157650856(-)$1	299	51	55	12.0000
d22c	chr6:1312808-1313077(+)$1	269	94	98	12.0000
F:dd	chr7:282648-282929(+)$1	281	23	27	12.0000
::CC	chr7:1132623-1132884(-)$1	261	3	7	12.0000
HHHH	chr5:139493572-139493864(+)$1	292	111	115	12.0000
gggg	chr4:1227621-1227878(-)$1	257	16	20	12.0000
((((	chr1:2213920-2214206(+)$1	286	18	22	12.0000
iiii	chr7:157656947-157657181(-)$1	234	54	58	12.0000
ffff	chr17:80192375-80192680(+)$1	305	93	97	12.0000
GGKK	chr1:2214784-2215065(+)$1	281	11	15	12.0000
""bb	chr6:138752171-138752414(-)$1	243	85	89	12.0000
EEEE	chr20:61279694-61279946(+)$1	252	28	32	12.0000
{DDD	chr8:600137-600422(-)$1	285	27	31	12.0000
HHHH	chr2:3470728-3470980(+)$1	252	131	135	12.0000
[eee	chr7:205756-206001(+)$1	245	37	41	12.0000
ddd]	chr7:1132118-1132411(-)$1	293	81	85	12.0000
::ff	chr7:158340968-158341340(-)$1	372	96	100	12.0000
fff"	chr17:37618278-37618527(+)$1	249	89	93	12.0000
C{GG	chr7:158351286-158351539(-)$1	253	43	47	12.0000
::ee	chr16:1805976-1806261(+)$1	285	17	21	12.0000
::DD	chr19:940067-940314(+)$1	247	2	6	12.0000
eee:	chr7:157768231-157768496(-)$1	265	74	78	12.0000
0000	chr16:89185736-89186016(+)$1	280	87	91	12.0000
hhhh	chr6:31600096-31600363(+)$1	267	24	28	12.0000
cccc	chr19:59074102-59074382(+)$1	280	97	101	12.0000
FFFF	chr8:609809-610056(-)$1	247	37	41	12.0000
a]ee	chr17:70536679-70536940(-)$1	261	73	77	12.0000

#DB
...)	chr9:139715774-139716050(+)$1	1	97	101	12.0000
....	chr21:46835400-46835715(+)$1	1	0	4	12.0000
((((	chr2:3471622-3471883(+)$1	1	8	12	12.0000
)).)	chr19:954284-954527(+)$1	1	95	99	12.0000
).((	chr2:202002643-202002949(+)$1	1	251	255	12.0000
((((	chr16:89346795-89347072(-)$1	1	156	160	12.0000
.(((	chr21:47559167-47559375(-)$1	1	20	24	12.0000
.)).	chr19:2270513-2270848(+)$1	1	159	163	12.0000
))))	chr20:61277255-61277496(+)$1	1	81	85	12.0000
....	chr20:62312797-62313082(+)$1	1	119	123	12.0000
.(((	chr2:242659940-242660264(+)$1	1	7	11	12.0000
.)).	chr1:245026472-245026751(-)$1	1	121	125	12.0000
....	chr1:143163533-143163844(-)$1	1	151	155	12.0000
((((	chr7:1154869-1155112(-)$1	1	14	18	12.0000
.)).	chr5:154135525-154135738(+)$1	1	68	72	12.0000
..))	chr7:158319715-158320014(-)$1	1	38	42	12.0000
))))	chr14:54421349-54421633(-)$1	1	97	101	12.0000
((..	chr7:222160-222466(+)$1	1	4	8	12.0000
((((	chr16:89433300-89433627(-)$1	1	52	56	12.0000
(((.	chr11:607176-607427(+)$1	1	79	83	12.0000
.)))	chr7:1140220-1140498(-)$1	1	112	116	12.0000
((.(	chr16:81490326-81490613(+)$1	1	83	87	12.0000
(.((	chr8:144671251-144671480(-)$1	1	33	37	12.0000
))))	chr8:121679423-121679684(-)$1	1	92	96	12.0000
..))	chr19:5077956-5078248(+)$1	1	70	74	12.0000
))))	chr3:196693142-196693383(-)$1	1	87	91	12.0000
(.((	chr7:157866613-157866884(-)$1	1	8	12	12.0000
..((	chr6:3320190-3320430(-)$1	1	13	17	12.0000
((((	chr22:45123179-45123395(+)$1	1	46	50	12.0000
.(((	chr16:89604747-89605046(+)$1	1	81	85	12.0000
))))	chr3:12947815-12948096(-)$1	1	49	53	12.0000
)).)	chr14:19889665-19889936(-)$1	1	119	123	12.0000
...(	chr4:763946-764202(-)$1	1	28	32	12.0000
).((	chr22:47566934-47567196(+)$1	1	53	57	12.0000
...(	chr9:136686814-136687098(-)$1	1	1	5	12.0000
))))	chr7:158317762-158318014(-)$1	1	93	97	12.0000
).))	chr22:21799735-21800003(+)$1	1	118	122	12.0000
((((	chr8:608648-608882(-)$1	1	10	14	12.0000
..((	chr16:591196-591450(+)$1	1	48	52	12.0000
..))	chr16:89346251-89346497(-)$1	1	100	104	12.0000
..((	chr6:170123909-170124170(-)$1	1	17	21	12.0000
...(	chr4:847219-847533(-)$1	1	40	44	12.0000
....	chr14:105909146-105909390(+)$1	1	83	87	12.0000
(((.	chr17:79954981-79955247(+)$1	1	10	14	12.0000
))((	chr1:2113773-2114039(+)$1	1	50	54	12.0000
..((	chr17:74303290-74303593(-)$1	1	27	31	12.0000
(...	chr7:158341503-158341734(-)$1	1	27	31	12.0000
...(	chr16:1366255-1366510(+)$1	1	37	41	12.0000
)...	chr17:74380016-74380295(+)$1	1	96	100	12.0000
((((	chr16:585125-585386(+)$1	1	4	8	12.0000
((((	chr14:59931821-59932119(-)$1	1	146	150	12.0000
(.((	chr8:144940403-144940695(-)$1	1	63	67	12.0000
((((	chr7:1151292-1151539(-)$1	1	2	6	12.0000
).))	chr3:196695109-196695376(-)$1	1	48	52	12.0000
.(((	chr22:47458472-47458721(+)$1	1	79	83	12.0000
..((	chr19:2341103-2341383(+)$1	1	74	78	12.0000
))).	chr8:144671550-144671842(-)$1	1	281	285	12.0000
(..(	chr11:70909511-70909796(-)$1	1	48	52	12.0000
(((.	chr1:2112948-2113183(+)$1	1	92	96	12.0000
..))	chr6:138751709-138751948(-)$1	1	166	170	12.0000
(..(	chr16:75285405-75285652(-)$1	1	149	153	12.0000
((((	chr17:80189632-80189894(+)$1	1	19	23	12.0000
((((	chr7:157650557-157650856(-)$1	1	51	55	12.0000
)..)	chr6:1312808-1313077(+)$1	1	94	98	12.0000
(.((	chr7:282648-282929(+)$1	1	23	27	12.0000
..((	chr7:1132623-1132884(-)$1	1	3	7	12.0000
))))	chr5:139493572-139493864(+)$1	1	111	115	12.0000
((((	chr4:1227621-1227878(-)$1	1	16	20	12.0000
....	chr1:2213920-2214206(+)$1	1	18	22	12.0000
))))	chr7:157656947-157657181(-)$1	1	54	58	12.0000
))))	chr17:80192375-80192680(+)$1	1	93	97	12.0000
((..	chr1:2214784-2215065(+)$1	1	11	15	12.0000
..((	chr6:138752171-138752414(-)$1	1	85	89	12.0000
((((	chr20:61279694-61279946(+)$1	1	28	32	12.0000
.(((	chr8:600137-600422(-)$1	1	27	31	12.0000
((((	chr2:3470728-3470980(+)$1	1	131	135	12.0000
.(((	chr7:205756-206001(+)$1	1	37	41	12.0000
))).	chr7:1132118-1132411(-)$1	1	81	85	12.0000
..((	chr7:158340968-158341340(-)$1	1	96	100	12.0000
(((.	chr17:37618278-37618527(+)$1	1	89	93	12.0000
(.((	chr7:158351286-158351539(-)$1	1	43	47	12.0000
..((	chr16:1805976-1806261(+)$1	1	17	21	12.0000
..((	chr19:940067-940314(+)$1	1	2	6	12.0000
))).	chr7:157768231-157768496(-)$1	1	74	78	12.0000
....	chr16:89185736-89186016(+)$1	1	87	91	12.0000
))))	chr6:31600096-31600363(+)$1	1	24	28	12.0000
))))	chr19:59074102-59074382(+)$1	1	97	101	12.0000
((((	chr8:609809-610056(-)$1	1	37	41	12.0000
).))	chr17:70536679-70536940(-)$1	1	73	77	12.0000

#PSSM
G : 0.92	g : 0.07	
A : 0.91	a : 0.08	
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	

#score	1068.0000000000007
#seq	89
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_UTR_m3_run2.nuc.txt

#NT
GGAG	chr17:73775647-73775932(-)$1	285	52	56	12.0000
GGAG	chr12:76442926-76443131(-)$1	205	116	120	12.0000
GGAG	chr12:122239361-122239618(-)$1	257	221	225	12.0000
GGAG	chr12:69656090-69656459(+)$1	369	29	33	12.0000
GGAG	chr1:11083388-11083678(+)$1	290	36	40	12.0000
GGAG	chr17:61869671-61869993(+)$1	322	226	230	12.0000
GGAG	chr14:102550922-102551190(-)$1	268	112	116	12.0000
GGAG	chr1:150902372-150902774(+)$1	402	243	247	12.0000
GGAG	chr10:103577937-103578277(-)$1	340	25	29	12.0000
GGAG	chr12:56991287-56991570(-)$1	283	72	76	12.0000
GGAG	chr21:44514633-44514940(-)$1	307	184	188	12.0000
GGAG	chr11:68660255-68660506(-)$1	251	213	217	12.0000
GGAG	chr1:205718994-205719228(-)$1	234	152	156	12.0000
GGAG	chr3:156870712-156871053(-)$1	341	40	44	12.0000
GGAG	chrX:154004371-154004660(+)$1	289	200	204	12.0000
ggag	chr1:150198838-150199203(-)$1	365	143	147	12.0000
GGAG	chr13:26828205-26828463(+)$1	258	62	66	12.0000
GGAG	chr10:70520836-70521050(+)$1	214	46	50	12.0000
GGAG	chr12:76453476-76453689(-)$1	213	191	195	12.0000
GGAG	chr1:100174434-100174700(-)$1	266	198	202	12.0000
GGAG	chr3:101292952-101293229(+)$1	277	88	92	12.0000
GGAG	chr14:21679463-21679691(-)$1	228	42	46	12.0000
GGAG	chr10:70520807-70521036(+)$1	229	75	79	12.0000
GGAG	chr7:139094208-139094466(+)$1	258	120	124	12.0000
ggag	chr14:78177078-78177327(+)$1	249	185	189	12.0000
GGAG	chr11:62481406-62481670(-)$1	264	42	46	12.0000
GGAG	chr2:232576551-232576778(+)$1	227	44	48	12.0000
GGAG	chr12:76442879-76443126(-)$1	247	111	115	12.0000
GGAG	chr5:179151579-179151835(+)$1	256	95	99	12.0000
GGAG	chr5:891654-891903(-)$1	249	109	113	12.0000
GGAG	chr22:20937381-20937640(+)$1	259	64	68	12.0000
ggag	chr9:100777601-100777856(+)$1	255	97	101	12.0000
GGAG	chr2:170668204-170668463(+)$1	259	50	54	12.0000
GGAG	chr3:50367767-50368058(-)$1	291	146	150	12.0000
GGAG	chr1:24975313-24975568(+)$1	255	108	112	12.0000
GGAG	chr8:117861117-117861339(-)$1	222	1	5	12.0000
GGAG	chr12:132198558-132198893(+)$1	335	144	148	12.0000
GGAG	chr1:42643257-42643520(-)$1	263	99	103	12.0000
GGAG	chr6:27094010-27094228(-)$1	218	36	40	12.0000
GGAG	chr12:125399032-125399280(-)$1	248	18	22	12.0000
GGAG	chr3:9487288-9487525(+)$1	237	111	115	12.0000
GGAG	chr13:31035369-31035667(-)$1	298	45	49	12.0000
GGAG	chr4:67994-68309(+)$1	315	145	149	12.0000
GGAG	chr1:205719028-205719264(-)$1	236	21	25	12.0000
GGAG	chr3:156874634-156874964(-)$1	330	126	130	12.0000
GGAG	chr17:27074967-27075236(+)$1	269	216	220	12.0000
GGAG	chr19:19105888-19106180(-)$1	292	174	178	12.0000
GGAG	chr17:37076002-37076318(+)$1	316	26	30	12.0000
GGAG	chr1:32372197-32372493(-)$1	296	98	102	12.0000
GGAG	chr3:170584050-170584361(-)$1	311	126	130	12.0000
GGAG	chr3:9470523-9470799(+)$1	276	120	124	12.0000
GGAG	chr13:111545074-111545411(-)$1	337	12	16	12.0000
GGAG	chr2:232576505-232576751(+)$1	246	15	19	12.0000
GGAG	chrX:102933330-102933624(-)$1	294	166	170	12.0000
GGAG	chr17:42283646-42283964(-)$1	318	34	38	12.0000
GGAG	chr19:8530106-8530369(+)$1	263	123	127	12.0000
GGAG	chr2:47388761-47389098(-)$1	337	155	159	12.0000
GGAG	chr12:104341310-104341540(+)$1	230	159	163	12.0000
GGAG	chr1:154148588-154148825(-)$1	237	169	173	12.0000
GGAG	chr15:40488685-40489029(+)$1	344	127	131	12.0000
GGAG	chr12:76449748-76449967(-)$1	219	25	29	12.0000
GGAG	chr2:232577052-232577257(+)$1	205	48	52	12.0000
GGAG	chr22:20097534-20097813(+)$1	279	12	16	12.0000
GGAG	chr6:31721006-31721284(+)$1	278	104	108	12.0000
GGAG	chr3:10362611-10362873(-)$1	262	29	33	12.0000
GGAG	chr12:48176479-48176764(-)$1	285	17	21	12.0000
GGAG	chr3:186506820-186507157(+)$1	337	116	120	12.0000
GGAG	chr4:2930080-2930394(+)$1	314	49	53	12.0000
GGAG	chr22:19842107-19842383(-)$1	276	11	15	12.0000
GGAG	chr6:31729492-31729774(+)$1	282	61	65	12.0000
ggag	chr14:73572478-73572888(+)$1	410	166	170	12.0000
GGAG	chr20:34329962-34330272(-)$1	310	18	22	12.0000
GGAg	chr14:23790877-23791138(+)$1	261	16	20	12.0000
ggag	chr7:111928853-111929108(+)$1	255	74	78	12.0000
GGAG	chr16:23478548-23478850(-)$1	302	26	30	12.0000
GGAG	chr17:76219443-76219762(+)$1	319	146	150	12.0000

#otherMatches

#Struct PSSM
ii:b	chr3:9512207-9512506(+)$1	299	97	101	12.0000
fffc	chr17:73775647-73775932(-)$1	285	52	56	12.0000
"a[c	chr12:76442926-76443131(-)$1	205	116	120	12.0000
FYYD	chr12:122239361-122239618(-)$1	257	221	225	12.0000
ff))	chr12:69656090-69656459(+)$1	369	29	33	12.0000
cc!!	chr1:11083388-11083678(+)$1	290	36	40	12.0000
ccc2	chr17:61869671-61869993(+)$1	322	226	230	12.0000
333b	chr14:102550922-102551190(-)$1	268	112	116	12.0000
c:::	chr1:150902372-150902774(+)$1	402	243	247	12.0000
d]dd	chr10:103577937-103578277(-)$1	340	25	29	12.0000
c[a[	chr12:56991287-56991570(-)$1	283	72	76	12.0000
CCCc	chr21:44514633-44514940(-)$1	307	184	188	12.0000
pppa	chr11:68660255-68660506(-)$1	251	213	217	12.0000
qqqq	chr1:205718994-205719228(-)$1	234	152	156	12.0000
[eee	chr3:156870712-156871053(-)$1	341	40	44	12.0000
DDDD	chrX:154004371-154004660(+)$1	289	200	204	12.0000
^^^^	chr1:150198838-150199203(-)$1	365	143	147	12.0000
gggg	chr13:26828205-26828463(+)$1	258	62	66	12.0000
::::	chr10:70520836-70521050(+)$1	214	46	50	12.0000
2ddd	chr12:76453476-76453689(-)$1	213	191	195	12.0000
GGGG	chr1:100174434-100174700(-)$1	266	198	202	12.0000
qqqg	chr3:101292952-101293229(+)$1	277	88	92	12.0000
HHHH	chr14:21679463-21679691(-)$1	228	42	46	12.0000
::::	chr10:70520807-70521036(+)$1	229	75	79	12.0000
bbss	chr7:139094208-139094466(+)$1	258	120	124	12.0000
HHHH	chr14:78177078-78177327(+)$1	249	185	189	12.0000
GGGG	chr11:62481406-62481670(-)$1	264	42	46	12.0000
gggg	chr2:232576551-232576778(+)$1	227	44	48	12.0000
FF::	chr12:76442879-76443126(-)$1	247	111	115	12.0000
d22f	chr5:179151579-179151835(+)$1	256	95	99	12.0000
aooo	chr5:891654-891903(-)$1	249	109	113	12.0000
cc[b	chr22:20937381-20937640(+)$1	259	64	68	12.0000
bbyy	chr9:100777601-100777856(+)$1	255	97	101	12.0000
ffll	chr2:170668204-170668463(+)$1	259	50	54	12.0000
22gg	chr3:50367767-50368058(-)$1	291	146	150	12.0000
DDDD	chr1:24975313-24975568(+)$1	255	108	112	12.0000
::::	chr8:117861117-117861339(-)$1	222	1	5	12.0000
IIII	chr12:132198558-132198893(+)$1	335	144	148	12.0000
eeee	chr1:42643257-42643520(-)$1	263	99	103	12.0000
2eee	chr6:27094010-27094228(-)$1	218	36	40	12.0000
hhhh	chr12:125399032-125399280(-)$1	248	18	22	12.0000
dddd	chr3:9487288-9487525(+)$1	237	111	115	12.0000
[eee	chr13:31035369-31035667(-)$1	298	45	49	12.0000
da!!	chr4:67994-68309(+)$1	315	145	149	12.0000
{EEE	chr1:205719028-205719264(-)$1	236	21	25	12.0000
gg22	chr3:156874634-156874964(-)$1	330	126	130	12.0000
EE}C	chr17:27074967-27075236(+)$1	269	216	220	12.0000
qqqq	chr19:19105888-19106180(-)$1	292	174	178	12.0000
ee:d	chr17:37076002-37076318(+)$1	316	26	30	12.0000
====	chr1:32372197-32372493(-)$1	296	98	102	12.0000
dddd	chr3:170584050-170584361(-)$1	311	126	130	12.0000
dddC	chr3:9470523-9470799(+)$1	276	120	124	12.0000
rrrr	chr13:111545074-111545411(-)$1	337	12	16	12.0000
""dd	chr2:232576505-232576751(+)$1	246	15	19	12.0000
gggg	chrX:102933330-102933624(-)$1	294	166	170	12.0000
c]bb	chr17:42283646-42283964(-)$1	318	34	38	12.0000
eeef	chr19:8530106-8530369(+)$1	263	123	127	12.0000
:CCC	chr2:47388761-47389098(-)$1	337	155	159	12.0000
dd]e	chr12:104341310-104341540(+)$1	230	159	163	12.0000
eeee	chr1:154148588-154148825(-)$1	237	169	173	12.0000
HHHH	chr15:40488685-40489029(+)$1	344	127	131	12.0000
bb^^	chr12:76449748-76449967(-)$1	219	25	29	12.0000
eegg	chr2:232577052-232577257(+)$1	205	48	52	12.0000
!ccc	chr22:20097534-20097813(+)$1	279	12	16	12.0000
f[cc	chr6:31721006-31721284(+)$1	278	104	108	12.0000
DD{A	chr3:10362611-10362873(-)$1	262	29	33	12.0000
eeee	chr12:48176479-48176764(-)$1	285	17	21	12.0000
2iii	chr3:186506820-186507157(+)$1	337	116	120	12.0000
2hhh	chr4:2930080-2930394(+)$1	314	49	53	12.0000
mddd	chr22:19842107-19842383(-)$1	276	11	15	12.0000
ff]d	chr6:31729492-31729774(+)$1	282	61	65	12.0000
mmmm	chr14:73572478-73572888(+)$1	410	166	170	12.0000
pddd	chr20:34329962-34330272(-)$1	310	18	22	12.0000
SSSS	chr14:23790877-23791138(+)$1	261	16	20	12.0000
ee]c	chr7:111928853-111929108(+)$1	255	74	78	12.0000
hhhh	chr16:23478548-23478850(-)$1	302	26	30	12.0000
c[an	chr17:76219443-76219762(+)$1	319	146	150	12.0000

#DB
)).(	chr3:9512207-9512506(+)$1	1	97	101	12.0000
((((	chr17:73775647-73775932(-)$1	1	52	56	12.0000
.(.(	chr12:76442926-76443131(-)$1	1	116	120	12.0000
)..)	chr12:122239361-122239618(-)$1	1	221	225	12.0000
((..	chr12:69656090-69656459(+)$1	1	29	33	12.0000
((..	chr1:11083388-11083678(+)$1	1	36	40	12.0000
))).	chr17:61869671-61869993(+)$1	1	226	230	12.0000
...)	chr14:102550922-102551190(-)$1	1	112	116	12.0000
)...	chr1:150902372-150902774(+)$1	1	243	247	12.0000
).))	chr10:103577937-103578277(-)$1	1	25	29	12.0000
(.(.	chr12:56991287-56991570(-)$1	1	72	76	12.0000
((((	chr21:44514633-44514940(-)$1	1	184	188	12.0000
...)	chr11:68660255-68660506(-)$1	1	213	217	12.0000
....	chr1:205718994-205719228(-)$1	1	152	156	12.0000
.(((	chr3:156870712-156871053(-)$1	1	40	44	12.0000
))))	chrX:154004371-154004660(+)$1	1	200	204	12.0000
....	chr1:150198838-150199203(-)$1	1	143	147	12.0000
))))	chr13:26828205-26828463(+)$1	1	62	66	12.0000
....	chr10:70520836-70521050(+)$1	1	46	50	12.0000
.)))	chr12:76453476-76453689(-)$1	1	191	195	12.0000
))))	chr1:100174434-100174700(-)$1	1	198	202	12.0000
...)	chr3:101292952-101293229(+)$1	1	88	92	12.0000
((((	chr14:21679463-21679691(-)$1	1	42	46	12.0000
....	chr10:70520807-70521036(+)$1	1	75	79	12.0000
((..	chr7:139094208-139094466(+)$1	1	120	124	12.0000
))))	chr14:78177078-78177327(+)$1	1	185	189	12.0000
((((	chr11:62481406-62481670(-)$1	1	42	46	12.0000
))))	chr2:232576551-232576778(+)$1	1	44	48	12.0000
((..	chr12:76442879-76443126(-)$1	1	111	115	12.0000
)..)	chr5:179151579-179151835(+)$1	1	95	99	12.0000
(...	chr5:891654-891903(-)$1	1	109	113	12.0000
((.(	chr22:20937381-20937640(+)$1	1	64	68	12.0000
((..	chr9:100777601-100777856(+)$1	1	97	101	12.0000
((..	chr2:170668204-170668463(+)$1	1	50	54	12.0000
..))	chr3:50367767-50368058(-)$1	1	146	150	12.0000
))))	chr1:24975313-24975568(+)$1	1	108	112	12.0000
....	chr8:117861117-117861339(-)$1	1	1	5	12.0000
))))	chr12:132198558-132198893(+)$1	1	144	148	12.0000
))))	chr1:42643257-42643520(-)$1	1	99	103	12.0000
.)))	chr6:27094010-27094228(-)$1	1	36	40	12.0000
((((	chr12:125399032-125399280(-)$1	1	18	22	12.0000
((((	chr3:9487288-9487525(+)$1	1	111	115	12.0000
.(((	chr13:31035369-31035667(-)$1	1	45	49	12.0000
)(..	chr4:67994-68309(+)$1	1	145	149	12.0000
.(((	chr1:205719028-205719264(-)$1	1	21	25	12.0000
))..	chr3:156874634-156874964(-)$1	1	126	130	12.0000
)).)	chr17:27074967-27075236(+)$1	1	216	220	12.0000
....	chr19:19105888-19106180(-)$1	1	174	178	12.0000
)).(	chr17:37076002-37076318(+)$1	1	26	30	12.0000
))))	chr1:32372197-32372493(-)$1	1	98	102	12.0000
((((	chr3:170584050-170584361(-)$1	1	126	130	12.0000
)))(	chr3:9470523-9470799(+)$1	1	120	124	12.0000
....	chr13:111545074-111545411(-)$1	1	12	16	12.0000
..((	chr2:232576505-232576751(+)$1	1	15	19	12.0000
))))	chrX:102933330-102933624(-)$1	1	166	170	12.0000
).))	chr17:42283646-42283964(-)$1	1	34	38	12.0000
))))	chr19:8530106-8530369(+)$1	1	123	127	12.0000
.)))	chr2:47388761-47389098(-)$1	1	155	159	12.0000
)).)	chr12:104341310-104341540(+)$1	1	159	163	12.0000
))))	chr1:154148588-154148825(-)$1	1	169	173	12.0000
((((	chr15:40488685-40489029(+)$1	1	127	131	12.0000
((..	chr12:76449748-76449967(-)$1	1	25	29	12.0000
((((	chr2:232577052-232577257(+)$1	1	48	52	12.0000
.(((	chr22:20097534-20097813(+)$1	1	12	16	12.0000
(.((	chr6:31721006-31721284(+)$1	1	104	108	12.0000
((.(	chr3:10362611-10362873(-)$1	1	29	33	12.0000
((((	chr12:48176479-48176764(-)$1	1	17	21	12.0000
.)))	chr3:186506820-186507157(+)$1	1	116	120	12.0000
.)))	chr4:2930080-2930394(+)$1	1	49	53	12.0000
.)))	chr22:19842107-19842383(-)$1	1	11	15	12.0000
)).)	chr6:31729492-31729774(+)$1	1	61	65	12.0000
....	chr14:73572478-73572888(+)$1	1	166	170	12.0000
.)))	chr20:34329962-34330272(-)$1	1	18	22	12.0000
....	chr14:23790877-23791138(+)$1	1	16	20	12.0000
)).)	chr7:111928853-111929108(+)$1	1	74	78	12.0000
))))	chr16:23478548-23478850(-)$1	1	26	30	12.0000
(.(.	chr17:76219443-76219762(+)$1	1	146	150	12.0000

#PSSM
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
A : 0.93	a : 0.06	
G : 0.92	g : 0.07	

#score	924.0000000000001
#seq	77
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_CDS_m2_run2.nuc.txt

#NT
CCCCGGGC	chr2:232574905-232575147(+)$1	242	126	134	15.5254
CGCAGGGC	chr19:1592448-1592729(-)$1	281	133	141	15.9491
CCCAGGGA	chr14:103576589-103576856(+)$1	267	38	46	16.1186
CCCAGGGU	chr17:75471647-75471889(+)$1	242	14	22	16.1186
CCCAGAGC	chr11:208956-209303(+)$1	347	318	326	15.6101
CCCAGGGC	chr19:2270394-2270617(+)$1	223	92	100	19.8474
CCCAGGGC	chr12:132401990-132402227(+)$1	237	79	87	19.8474
CCCUGGGC	chr4:2814083-2814358(+)$1	275	48	56	15.6101
CCCAGGGC	chr19:2270417-2270679(+)$1	262	69	77	19.8474
CCCAGGGC	chr11:66625265-66625515(-)$1	250	109	117	19.8474
cccagggg	chr6:48036284-48036526(-)$1	242	82	90	16.0338
CCCAGGGA	chr17:36760676-36760920(-)$1	244	140	148	16.1186
CGCAGGGC	chr1:150525411-150525664(-)$1	253	188	196	15.9491
CCCAGGGG	chr5:139493793-139494054(+)$1	261	122	130	16.0338
CGCAGGGC	chr20:32255798-32256064(-)$1	266	174	182	15.9491
CCCAGGGC	chr15:74725829-74726185(-)$1	356	56	64	19.8474
CCCAUGGC	chr9:35792401-35792709(+)$1	308	1	9	15.3559
CCCAUGGC	chr9:35792332-35792599(+)$1	267	70	78	15.3559
gccagggc	chr19:1469344-1469620(-)$1	276	113	121	15.9491
CGCAGGGC	chr11:57244196-57244471(-)$1	275	150	158	15.9491
CCAAGGGC	chr14:23991938-23992205(+)$1	267	35	43	15.4406
CCCAGGGU	chr17:75471570-75471826(+)$1	256	91	99	16.1186
CCCAGGGC	chr8:145737992-145738250(+)$1	258	64	72	19.8474
CCCAGGGA	chr2:241496664-241496977(-)$1	313	39	47	16.1186
CUCAGGGC	chr11:704364-704618(-)$1	254	146	154	15.7796
CUCAGGGC	chr15:51386772-51387033(+)$1	261	90	98	15.7796
CCCAGGCC	chr3:128840187-128840435(-)$1	248	117	125	15.1864
CCCCGGGC	chr17:79106409-79106686(-)$1	277	218	226	15.5254
CCCAGGGU	chr22:37904884-37905163(-)$1	279	47	55	16.1186
CCCAGGGU	chr17:75471535-75471763(+)$1	228	126	134	16.1186
CUCAGGGC	chr11:63884663-63884891(-)$1	228	69	77	15.7796
CCCAGCGC	chr7:100136947-100137229(+)$1	282	173	181	15.6101
gccagggc	chr19:38876315-38876574(+)$1	259	156	164	15.9491
CCCAGGGG	chr7:766500-766756(-)$1	256	179	187	16.0338
CCAAGGGC	chr14:23991736-23991984(+)$1	248	237	245	15.4406
cccugggc	chr1:1181939-1182180(-)$1	241	8	16	15.6101
CCGAGGGC	chr5:154135341-154135595(+)$1	254	73	81	15.4406
CCCAGAGC	chr9:139249969-139250268(+)$1	299	167	175	15.6101
CCCAGGCC	chr6:170123777-170124061(-)$1	284	227	235	15.1864
GCCAGGGC	chr19:59074107-59074388(+)$1	281	129	137	15.9491
CCCAGAGC	chr10:31608987-31609233(+)$1	246	51	59	15.6101
CCCAGGGA	chr11:126146261-126146506(+)$1	245	50	58	16.1186
CCCAGGGC	chr19:2270364-2270594(+)$1	230	122	130	19.8474
CCGAGGGC	chr2:54197730-54198054(-)$1	324	10	18	15.4406
CCCGGGGC	chr19:1468641-1468874(-)$1	233	66	74	15.4406
CGCAGGGC	chr19:19640218-19640464(+)$1	246	83	91	15.9491
CCCACGGC	chr19:1469837-1470094(-)$1	257	33	41	15.3559
CCCAGGGC	chr12:123464880-123465156(+)$1	276	111	119	19.8474
CCCAGGGC	chr12:69202154-69202456(+)$1	302	19	27	19.8474
GCCAGGGC	chr21:46929119-46929371(-)$1	252	2	10	15.9491
CCCUGGGC	chr19:58991496-58991834(-)$1	338	173	181	15.6101
CCCAGCGC	chr19:498704-498933(-)$1	229	0	8	15.6101
gccagggc	chr19:1469420-1469662(-)$1	242	155	163	15.9491
CCCAGCGC	chr19:47778371-47778591(+)$1	220	9	17	15.6101
CCCAGGGC	chr11:66625993-66626255(-)$1	262	123	131	19.8474
CCCACGGC	chr19:3543083-3543386(-)$1	303	251	259	15.3559
GCCAGGGC	chr17:79860086-79860313(-)$1	227	122	130	15.9491
UCCAGGGC	chr11:63885098-63885330(-)$1	232	98	106	15.5254

#otherMatches

#Struct PSSM
ddlllddd	chr7:77166704-77166994(+)$1	290	2	10	15.3559
qqqqqqcc	chr2:232574905-232575147(+)$1	242	126	134	15.5254
ebblllbb	chr19:1592448-1592729(-)$1	281	133	141	15.9491
hhhhhhhn	chr14:103576589-103576856(+)$1	267	38	46	16.1186
CEEEEE{D	chr17:75471647-75471889(+)$1	242	14	22	16.1186
CCCZZZGG	chr11:208956-209303(+)$1	347	318	326	15.6101
2a::cccd	chr19:2270394-2270617(+)$1	223	92	100	19.8474
B{CCCddd	chr12:132401990-132402227(+)$1	237	79	87	19.8474
FF{EEEEE	chr4:2814083-2814358(+)$1	275	48	56	15.6101
GGG:cccd	chr19:2270417-2270679(+)$1	262	69	77	19.8474
GJJJJJJJ	chr11:66625265-66625515(-)$1	250	109	117	19.8474
eeee::::	chr6:48036284-48036526(-)$1	242	82	90	16.0338
iiiiiii#	chr17:36760676-36760920(-)$1	244	140	148	16.1186
mmmmccc]	chr1:150525411-150525664(-)$1	253	188	196	15.9491
FFFF}III	chr5:139493793-139494054(+)$1	261	122	130	16.0338
dcccdddd	chr20:32255798-32256064(-)$1	266	174	182	15.9491
HHHHHH{D	chr15:74725829-74726185(-)$1	356	56	64	19.8474
::bb[bb[	chr9:35792401-35792709(+)$1	308	1	9	15.3559
:ccc[bb[	chr9:35792332-35792599(+)$1	267	70	78	15.3559
eeefffff	chr19:1469344-1469620(-)$1	276	113	121	15.9491
bnnnnnbb	chr11:57244196-57244471(-)$1	275	150	158	15.9491
####ffff	chr14:23991938-23992205(+)$1	267	35	43	15.4406
EEEccc[c	chr17:75471570-75471826(+)$1	256	91	99	16.1186
dddd!!bb	chr8:145737992-145738250(+)$1	258	64	72	19.8474
bbffffff	chr2:241496664-241496977(-)$1	313	39	47	16.1186
ddd]ffff	chr11:704364-704618(-)$1	254	146	154	15.7796
ccc]ffff	chr15:51386772-51387033(+)$1	261	90	98	15.7796
ba22ccce	chr3:128840187-128840435(-)$1	248	117	125	15.1864
dddddddd	chr17:79106409-79106686(-)$1	277	218	226	15.5254
bbddddnn	chr22:37904884-37905163(-)$1	279	47	55	16.1186
eeeccc[c	chr17:75471535-75471763(+)$1	228	126	134	16.1186
FFFFFFEE	chr11:63884663-63884891(-)$1	228	69	77	15.7796
ccc]bb:D	chr7:100136947-100137229(+)$1	282	173	181	15.6101
ddd333gg	chr19:38876315-38876574(+)$1	259	156	164	15.9491
dd]ddddf	chr7:766500-766756(-)$1	256	179	187	16.0338
DDDD}EEE	chr14:23991736-23991984(+)$1	248	237	245	15.4406
cmmmmccc	chr1:1181939-1182180(-)$1	241	8	16	15.6101
GGYYEEEE	chr5:154135341-154135595(+)$1	254	73	81	15.4406
IIIIIIII	chr9:139249969-139250268(+)$1	299	167	175	15.6101
b:eeeeec	chr6:170123777-170124061(-)$1	284	227	235	15.1864
iiiii[bb	chr19:59074107-59074388(+)$1	281	129	137	15.9491
JNNNNNEE	chr10:31608987-31609233(+)$1	246	51	59	15.6101
]ccc22ff	chr11:126146261-126146506(+)$1	245	50	58	16.1186
:EEEEE}A	chr19:2270364-2270594(+)$1	230	122	130	19.8474
ccc!!ddd	chr2:54197730-54198054(-)$1	324	10	18	15.4406
eeee[eee	chr19:1468641-1468874(-)$1	233	66	74	15.4406
d[bb[eee	chr19:19640218-19640464(+)$1	246	83	91	15.9491
dddEEEEE	chr19:1469837-1470094(-)$1	257	33	41	15.3559
===22ccc	chr12:123464880-123465156(+)$1	276	111	119	19.8474
EEEEEKKB	chr12:69202154-69202456(+)$1	302	19	27	19.8474
{GGGGGGG	chr21:46929119-46929371(-)$1	252	2	10	15.9491
IIIIIII}	chr19:58991496-58991834(-)$1	338	173	181	15.6101
::CCC{AL	chr19:498704-498933(-)$1	229	0	8	15.6101
eeefffff	chr19:1469420-1469662(-)$1	242	155	163	15.9491
cchhhhhh	chr19:47778371-47778591(+)$1	220	9	17	15.6101
::bb!!ee	chr11:66625993-66626255(-)$1	262	123	131	19.8474
:::::ddd	chr19:3543083-3543386(-)$1	303	251	259	15.3559
ccc333bb	chr17:79860086-79860313(-)$1	227	122	130	15.9491
EELLLEEE	chr11:63885098-63885330(-)$1	232	98	106	15.5254

#DB
((...)))	chr7:77166704-77166994(+)$1	1	2	10	15.3559
......))	chr2:232574905-232575147(+)$1	1	126	134	15.5254
(((...))	chr19:1592448-1592729(-)$1	1	133	141	15.9491
(((((((.	chr14:103576589-103576856(+)$1	1	38	46	16.1186
((((((.(	chr17:75471647-75471889(+)$1	1	14	22	16.1186
)))...))	chr11:208956-209303(+)$1	1	318	326	15.6101
.)..((((	chr19:2270394-2270617(+)$1	1	92	100	19.8474
(.((((((	chr12:132401990-132402227(+)$1	1	79	87	19.8474
((.(((((	chr4:2814083-2814358(+)$1	1	48	56	15.6101
(((.((((	chr19:2270417-2270679(+)$1	1	69	77	19.8474
)(((((((	chr11:66625265-66625515(-)$1	1	109	117	19.8474
))))....	chr6:48036284-48036526(-)$1	1	82	90	16.0338
(((((((.	chr17:36760676-36760920(-)$1	1	140	148	16.1186
....))).	chr1:150525411-150525664(-)$1	1	188	196	15.9491
)))).)))	chr5:139493793-139494054(+)$1	1	122	130	16.0338
))))))))	chr20:32255798-32256064(-)$1	1	174	182	15.9491
((((((.(	chr15:74725829-74726185(-)$1	1	56	64	19.8474
..((.((.	chr9:35792401-35792709(+)$1	1	1	9	15.3559
.(((.((.	chr9:35792332-35792599(+)$1	1	70	78	15.3559
))))))))	chr19:1469344-1469620(-)$1	1	113	121	15.9491
(.....))	chr11:57244196-57244471(-)$1	1	150	158	15.9491
....((((	chr14:23991938-23992205(+)$1	1	35	43	15.4406
((((((.(	chr17:75471570-75471826(+)$1	1	91	99	16.1186
((((..((	chr8:145737992-145738250(+)$1	1	64	72	19.8474
))))))))	chr2:241496664-241496977(-)$1	1	39	47	16.1186
))).))))	chr11:704364-704618(-)$1	1	146	154	15.7796
))).))))	chr15:51386772-51387033(+)$1	1	90	98	15.7796
))..)))(	chr3:128840187-128840435(-)$1	1	117	125	15.1864
))))((((	chr17:79106409-79106686(-)$1	1	218	226	15.5254
((((((..	chr22:37904884-37905163(-)$1	1	47	55	16.1186
)))(((.(	chr17:75471535-75471763(+)$1	1	126	134	16.1186
((((((((	chr11:63884663-63884891(-)$1	1	69	77	15.7796
))).)).)	chr7:100136947-100137229(+)$1	1	173	181	15.6101
)))...))	chr19:38876315-38876574(+)$1	1	156	164	15.9491
)).))))(	chr7:766500-766756(-)$1	1	179	187	16.0338
)))).)))	chr14:23991736-23991984(+)$1	1	237	245	15.4406
(....)))	chr1:1181939-1182180(-)$1	1	8	16	15.6101
))..))))	chr5:154135341-154135595(+)$1	1	73	81	15.4406
))))))))	chr9:139249969-139250268(+)$1	1	167	175	15.6101
).((((((	chr6:170123777-170124061(-)$1	1	227	235	15.1864
(((((.((	chr19:59074107-59074388(+)$1	1	129	137	15.9491
(.....((	chr10:31608987-31609233(+)$1	1	51	59	15.6101
.)))..))	chr11:126146261-126146506(+)$1	1	50	58	16.1186
.))))).)	chr19:2270364-2270594(+)$1	1	122	130	19.8474
(((..(((	chr2:54197730-54198054(-)$1	1	10	18	15.4406
((((.(((	chr19:1468641-1468874(-)$1	1	66	74	15.4406
(.((.(((	chr19:19640218-19640464(+)$1	1	83	91	15.9491
))))))))	chr19:1469837-1470094(-)$1	1	33	41	15.3559
)))..)))	chr12:123464880-123465156(+)$1	1	111	119	19.8474
(((((..(	chr12:69202154-69202456(+)$1	1	19	27	19.8474
.(((((((	chr21:46929119-46929371(-)$1	1	2	10	15.9491
))))))).	chr19:58991496-58991834(-)$1	1	173	181	15.6101
..(((.(.	chr19:498704-498933(-)$1	1	0	8	15.6101
))))))))	chr19:1469420-1469662(-)$1	1	155	163	15.9491
))((((((	chr19:47778371-47778591(+)$1	1	9	17	15.6101
..((..((	chr11:66625993-66626255(-)$1	1	123	131	19.8474
.....(((	chr19:3543083-3543386(-)$1	1	251	259	15.3559
)))...))	chr17:79860086-79860313(-)$1	1	122	130	15.9491
((...(((	chr11:63885098-63885330(-)$1	1	98	106	15.5254

#PSSM
C : 0.84	g : 0.05	G : 0.05	c : 0.03	U : 0.01	
C : 0.77	G : 0.08	c : 0.08	U : 0.05	
C : 0.83	c : 0.08	A : 0.03	G : 0.03	U : 0.01	
A : 0.83	a : 0.06	C : 0.03	U : 0.03	u : 0.01	G : 0.01	
G : 0.84	g : 0.08	U : 0.03	C : 0.03	
G : 0.81	g : 0.08	A : 0.05	C : 0.05	
G : 0.88	g : 0.08	C : 0.03	
C : 0.74	A : 0.06	U : 0.06	c : 0.06	G : 0.03	g : 0.01	

#score	969.7288135593215
#seq	59
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_UTR_m2_run2.nuc.txt

#NT
GAAGAAGCA	chr18:55282771-55283063(-)$1	292	134	143	18.5217
AAAGAAGAA	chr19:30501994-30502244(+)$1	250	54	63	17.9782
gaggaagaa	chr11:71821036-71821372(-)$1	336	113	122	19.1739
GAAGAAGAA	chr20:20024035-20024322(-)$1	287	172	181	22.4347
GAGGAAGAA	chr12:49233531-49233793(-)$1	262	146	155	19.1739
gaaaaagaa	chr10:15183356-15183657(-)$1	301	131	140	17.6521
GAAGAAGAG	chr11:18428602-18428901(+)$1	299	174	183	18.0869
GGAGAAGAA	chr4:76580150-76580441(-)$1	291	107	116	18.8478
GAAGAAGAA	chrX:118763181-118763513(-)$1	332	86	95	22.4347
GGAGAAGAA	chr4:76580241-76580524(-)$1	283	190	199	18.8478
GAUGAAGAA	chr14:21679461-21679746(-)$1	285	25	34	19.6086
GAAGAAGAU	chr5:179153648-179153861(+)$1	213	55	64	18.3043
GAGGAAGAA	chr9:134330423-134330654(+)$1	231	95	104	19.1739
AAAGAAGAA	chr7:104742285-104742586(+)$1	301	56	65	17.9782
GAUGAAGAA	chr1:150598026-150598359(-)$1	333	119	128	19.6086
GAAGACGAA	chr17:1248660-1248893(-)$1	233	135	144	17.9782
GAAGAAGAC	chr5:149778483-149778734(+)$1	251	100	109	18.0869
GAAGAAUAA	chr1:156294737-156294980(-)$1	243	27	36	17.7608
CAAGAAGAA	chr19:54647872-54648100(+)$1	228	174	183	17.8695
GGAGAAGAA	chr20:60715812-60716078(-)$1	266	116	125	18.8478
gaagaagaa	chr12:123466191-123466508(+)$1	317	101	110	22.4347
GCUGAAGAA	chr9:136901249-136901542(-)$1	293	99	108	15.6956
GAGGAAGAA	chr22:36906864-36907148(-)$1	284	100	109	19.1739
GAAGAAGAA	chr1:29475021-29475264(-)$1	243	33	42	22.4347
GAAGAAGCA	chr19:19603288-19603528(+)$1	240	161	170	18.5217
GAAGAAGGA	chr11:2972908-2973140(-)$1	232	113	122	18.3043
gaugaagaa	chr14:102549312-102549575(-)$1	263	109	118	19.6086
GAAGAAGAA	chr1:29475125-29475378(-)$1	253	147	156	22.4347
GAAGAUGAA	chr7:26251600-26251851(+)$1	251	210	219	18.0869
GCAGAAGAA	chr9:36211498-36211762(+)$1	264	105	114	18.5217
GAAGAAGAA	chr15:78841118-78841396(+)$1	278	105	114	22.4347
GAAGAAGGA	chr19:7998640-7998942(-)$1	302	68	77	18.3043
GAAGAUGAA	chr1:43629935-43630264(-)$1	329	126	135	18.0869
GGAGAAGAA	chr19:49994885-49995121(+)$1	236	129	138	18.8478
GAAGAAAAA	chr1:28527601-28527983(-)$1	382	167	176	17.7608
GGAGAAGAA	chr17:40133856-40134122(-)$1	266	137	146	18.8478
GUUGAAGAA	chr6:163955915-163956224(+)$1	309	209	218	15.5869
GAAGAAGCA	chr2:132010395-132010661(+)$1	266	124	133	18.5217
GAUGAAGAA	chr2:47388761-47389000(-)$1	239	72	81	19.6086
GAAGAGGAA	chr2:172582027-172582293(+)$1	266	102	111	17.9782
gaagaagaa	chr4:174253112-174253364(-)$1	252	49	58	22.4347
GAUGAAGAU	chr11:3023096-3023384(-)$1	288	118	127	15.4782
GAAGGAGAA	chr19:10227408-10227709(-)$1	301	214	223	17.6521
GAAGAAGAA	chr15:69072370-69072583(-)$1	213	101	110	22.4347
GAAGAAGCA	chr19:19603355-19603622(+)$1	267	94	103	18.5217

#otherMatches

#Struct PSSM
=========	chr8:117861084-117861299(-)$1	215	31	40	15.4782
d[ccc%%%%	chr18:55282771-55283063(-)$1	292	134	143	18.5217
GGGGG::::	chr19:30501994-30502244(+)$1	250	54	63	17.9782
^^^^^^^^^	chr11:71821036-71821372(-)$1	336	113	122	19.1739
:::::BB{D	chr20:20024035-20024322(-)$1	287	172	181	22.4347
22eeeee::	chr12:49233531-49233793(-)$1	262	146	155	19.1739
:::::::::	chr10:15183356-15183657(-)$1	301	131	140	17.6521
eeeeeeeee	chr11:18428602-18428901(+)$1	299	174	183	18.0869
gggg[bb##	chr4:76580150-76580441(-)$1	291	107	116	18.8478
DDEEEEE::	chrX:118763181-118763513(-)$1	332	86	95	22.4347
gggg[bb##	chr4:76580241-76580524(-)$1	283	190	199	18.8478
dddd]dddd	chr14:21679461-21679746(-)$1	285	25	34	19.6086
CCC{FFFFF	chr5:179153648-179153861(+)$1	213	55	64	18.3043
:HHHHHHHH	chr9:134330423-134330654(+)$1	231	95	104	19.1739
b22dddd::	chr7:104742285-104742586(+)$1	301	56	65	17.9782
a]bb]bb::	chr1:150598026-150598359(-)$1	333	119	128	19.6086
FFFFFF:::	chr17:1248660-1248893(-)$1	233	135	144	17.9782
::BBKKDDD	chr5:149778483-149778734(+)$1	251	100	109	18.0869
iiccc::::	chr1:156294737-156294980(-)$1	243	27	36	17.7608
cc:::::::	chr19:54647872-54648100(+)$1	228	174	183	17.8695
oeeeee]bb	chr20:60715812-60716078(-)$1	266	116	125	18.8478
========g	chr12:123466191-123466508(+)$1	317	101	110	22.4347
ddddqqqqq	chr9:136901249-136901542(-)$1	293	99	108	15.6956
eeeee!!ee	chr22:36906864-36907148(-)$1	284	100	109	19.1739
BBMMMMCCC	chr1:29475021-29475264(-)$1	243	33	42	22.4347
cc]a]ccc:	chr19:19603288-19603528(+)$1	240	161	170	18.5217
44ggggggg	chr11:2972908-2973140(-)$1	232	113	122	18.3043
ccc$$$$$d	chr14:102549312-102549575(-)$1	263	109	118	19.6086
b^^^^^^^^	chr1:29475125-29475378(-)$1	253	147	156	22.4347
dCCC}EEEE	chr7:26251600-26251851(+)$1	251	210	219	18.0869
FFFFFF~~~	chr9:36211498-36211762(+)$1	264	105	114	18.5217
FFFFKKFFF	chr15:78841118-78841396(+)$1	278	105	114	22.4347
c::::GGGG	chr19:7998640-7998942(-)$1	302	68	77	18.3043
FF{DDDD{A	chr1:43629935-43630264(-)$1	329	126	135	18.0869
{CCCKKBBK	chr19:49994885-49995121(+)$1	236	129	138	18.8478
ddddttttt	chr1:28527601-28527983(-)$1	382	167	176	17.7608
d22ffffff	chr17:40133856-40134122(-)$1	266	137	146	18.8478
[bbmmmmbb	chr6:163955915-163956224(+)$1	309	209	218	15.5869
c]ddddDDD	chr2:132010395-132010661(+)$1	266	124	133	18.5217
]ccc22fff	chr2:47388761-47389000(-)$1	239	72	81	19.6086
ccc]hhhhh	chr2:172582027-172582293(+)$1	266	102	111	17.9782
:::::::::	chr4:174253112-174253364(-)$1	252	49	58	22.4347
E{JJJJJJJ	chr11:3023096-3023384(-)$1	288	118	127	15.4782
44ccc333f	chr19:10227408-10227709(-)$1	301	214	223	17.6521
e]eeeee22	chr15:69072370-69072583(-)$1	213	101	110	22.4347
CC:::::::	chr19:19603355-19603622(+)$1	267	94	103	18.5217

#DB
)))))))))	chr8:117861084-117861299(-)$1	1	31	40	15.4782
(.(((....	chr18:55282771-55283063(-)$1	1	134	143	18.5217
(((((....	chr19:30501994-30502244(+)$1	1	54	63	17.9782
.........	chr11:71821036-71821372(-)$1	1	113	122	19.1739
.....((.(	chr20:20024035-20024322(-)$1	1	172	181	22.4347
..)))))..	chr12:49233531-49233793(-)$1	1	146	155	19.1739
.........	chr10:15183356-15183657(-)$1	1	131	140	17.6521
(((((((((	chr11:18428602-18428901(+)$1	1	174	183	18.0869
((((.((..	chr4:76580150-76580441(-)$1	1	107	116	18.8478
(((((((..	chrX:118763181-118763513(-)$1	1	86	95	22.4347
((((.((..	chr4:76580241-76580524(-)$1	1	190	199	18.8478
)))).))))	chr14:21679461-21679746(-)$1	1	25	34	19.6086
(((.(((((	chr5:179153648-179153861(+)$1	1	55	64	18.3043
.))))))))	chr9:134330423-134330654(+)$1	1	95	104	19.1739
)..))))..	chr7:104742285-104742586(+)$1	1	56	65	17.9782
).)).))..	chr1:150598026-150598359(-)$1	1	119	128	19.6086
))))))...	chr17:1248660-1248893(-)$1	1	135	144	17.9782
..((..(((	chr5:149778483-149778734(+)$1	1	100	109	18.0869
)))))....	chr1:156294737-156294980(-)$1	1	27	36	17.7608
)).......	chr19:54647872-54648100(+)$1	1	174	183	17.8695
.))))).))	chr20:60715812-60716078(-)$1	1	116	125	18.8478
)))))))))	chr12:123466191-123466508(+)$1	1	101	110	22.4347
((((.....	chr9:136901249-136901542(-)$1	1	99	108	15.6956
(((((..((	chr22:36906864-36907148(-)$1	1	100	109	19.1739
((....(((	chr1:29475021-29475264(-)$1	1	33	42	22.4347
)).).))).	chr19:19603288-19603528(+)$1	1	161	170	18.5217
..)))))))	chr11:2972908-2973140(-)$1	1	113	122	18.3043
(((.....(	chr14:102549312-102549575(-)$1	1	109	118	19.6086
(........	chr1:29475125-29475378(-)$1	1	147	156	22.4347
)))).))))	chr7:26251600-26251851(+)$1	1	210	219	18.0869
))))))...	chr9:36211498-36211762(+)$1	1	105	114	18.5217
((((..(((	chr15:78841118-78841396(+)$1	1	105	114	22.4347
)....((((	chr19:7998640-7998942(-)$1	1	68	77	18.3043
((.((((.(	chr1:43629935-43630264(-)$1	1	126	135	18.0869
.(((..((.	chr19:49994885-49995121(+)$1	1	129	138	18.8478
((((.....	chr1:28527601-28527983(-)$1	1	167	176	17.7608
)..))))))	chr17:40133856-40134122(-)$1	1	137	146	18.8478
.((....))	chr6:163955915-163956224(+)$1	1	209	218	15.5869
).)))))))	chr2:132010395-132010661(+)$1	1	124	133	18.5217
.)))..)))	chr2:47388761-47389000(-)$1	1	72	81	19.6086
))).)))))	chr2:172582027-172582293(+)$1	1	102	111	17.9782
.........	chr4:174253112-174253364(-)$1	1	49	58	22.4347
(.(((((((	chr11:3023096-3023384(-)$1	1	118	127	15.4782
..)))...)	chr19:10227408-10227709(-)$1	1	214	223	17.6521
).)))))..	chr15:69072370-69072583(-)$1	1	101	110	22.4347
((.......	chr19:19603355-19603622(+)$1	1	94	103	18.5217

#PSSM
G : 0.82	g : 0.10	A : 0.04	C : 0.02	
A : 0.71	a : 0.10	G : 0.10	C : 0.04	U : 0.02	
A : 0.67	U : 0.15	G : 0.06	a : 0.06	g : 0.02	u : 0.02	
G : 0.89	g : 0.08	a : 0.02	
A : 0.86	a : 0.10	G : 0.02	
A : 0.80	a : 0.10	U : 0.04	C : 0.02	G : 0.02	
G : 0.84	g : 0.10	U : 0.02	A : 0.02	
A : 0.76	a : 0.10	C : 0.08	G : 0.04	
A : 0.78	a : 0.10	U : 0.06	G : 0.02	C : 0.02	

#score	871.5652173913038
#seq	46
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_CDS_m2_run1.nuc.txt

#NT
GCCUCGGCG	chr16:24741064-24741358(+)$1	294	219	228	15.9361
GCCGGGGCG	chr9:97767347-97767605(+)$1	258	113	122	17.9574
GCCUGGGGA	chr1:110169640-110169927(+)$1	287	220	229	14.8723
GCCUGGGCC	chr12:132402900-132403145(+)$1	245	184	193	17.6382
GCCCGGGCU	chr1:38274022-38274309(+)$1	287	64	73	15.0851
GUCUGGGGG	chr17:16347304-16347550(+)$1	246	107	116	14.2340
gccggggcg	chr17:46985879-46986153(+)$1	274	25	34	17.9574
GCCUGGCCG	chr2:231902758-231902992(+)$1	234	96	105	15.9361
gcccgggcg	chr15:78369842-78370059(-)$1	217	80	89	18.2765
gccugggcg	chr11:65325150-65325431(-)$1	281	107	116	20.5106
CCCUGGGCG	chr16:4660094-4660317(-)$1	223	187	196	16.0425
uccugggcg	chr19:460720-460967(-)$1	247	206	215	16.1489
gccugggCU	chr8:145687815-145688067(-)$1	252	176	185	17.3191
GCCUGGGGU	chr17:79860506-79860775(-)$1	269	85	94	15.0851
GCCUGGGAC	chr19:35500162-35500505(+)$1	343	13	22	14.5531
GCCUcggcg	chr20:62371148-62371379(+)$1	231	93	102	15.9361
GGCUGGGGG	chr1:28845142-28845411(+)$1	269	247	256	14.1276
GCCUGGGCU	chr1:227164984-227165296(+)$1	312	177	186	17.3191
gccggggcg	chr1:2160039-2160323(+)$1	284	83	92	17.9574
GCCUGGGCA	chr9:136223066-136223330(-)$1	264	239	248	17.1063
GCCUGGACG	chr22:37964458-37964720(+)$1	262	250	259	16.0425
GCCUGGGCG	chr1:27320725-27320996(+)$1	271	120	129	20.5106
gcccgggcg	chr15:78369860-78370070(-)$1	210	91	100	18.2765
GCCUGGGGG	chr17:79913316-79913634(-)$1	318	38	47	18.2765
GCCUGGGUG	chr22:39134582-39134837(+)$1	255	159	168	17.2127
ACCUGGGCG	chr19:1585104-1585373(-)$1	269	204	213	16.0425
GCCAGGGAG	chr19:1253807-1254083(+)$1	276	99	108	14.4468
GUCCGGGCG	chr7:150777690-150777949(-)$1	259	41	50	14.2340
GACUGGGGG	chrX:53222296-53222536(-)$1	240	207	216	14.0212
gcccgggcg	chr16:89894848-89895104(+)$1	256	113	122	18.2765
gccgggGCG	chr16:87426130-87426483(+)$1	353	156	165	17.9574
uccugggcg	chr19:460530-460774(-)$1	244	13	22	16.1489
gcccgggcg	chr1:27022734-27023050(+)$1	316	48	57	18.2765
gccggggcg	chr2:231902513-231902748(+)$1	235	178	187	17.9574
gccggggcc	chr2:42275202-42275460(+)$1	258	8	17	15.0851
GCCUGGGGC	chr4:1231769-1232072(-)$1	303	118	127	15.4042
gcccgggcg	chr15:78369834-78370042(-)$1	208	63	72	18.2765
GGCUGGGGG	chr12:58005524-58005834(+)$1	310	292	301	14.1276
GUCCGGGCG	chr7:150777749-150777982(-)$1	233	74	83	14.2340
GCCCGGGCG	chr11:637284-637535(+)$1	251	7	16	18.2765
GCCUGGACG	chr22:37964575-37964818(+)$1	243	133	142	16.0425
GCCAGGGAG	chr4:985899-986170(-)$1	271	159	168	14.4468
gccuggggg	chr14:105173889-105174168(+)$1	279	108	117	18.2765
gccuggggc	chr17:36878231-36878475(+)$1	244	9	18	15.4042
gccUGGGCC	chr17:7311430-7311681(+)$1	251	232	241	17.6382
GCCUGAGCG	chr21:47565651-47565894(-)$1	243	54	63	15.7234

#otherMatches

#Struct PSSM
GGGGGGG{C	chr12:57919676-57919916(+)$1	240	10	19	15.4042
e4444dddd	chr16:24741064-24741358(+)$1	294	219	228	15.9361
=========	chr9:97767347-97767605(+)$1	258	113	122	17.9574
abblllbb]	chr1:110169640-110169927(+)$1	287	220	229	14.8723
bb!!ccc!!	chr12:132402900-132403145(+)$1	245	184	193	17.6382
ffff"""dd	chr1:38274022-38274309(+)$1	287	64	73	15.0851
[iiiiiiii	chr17:16347304-16347550(+)$1	246	107	116	14.2340
[gggggggn	chr17:46985879-46986153(+)$1	274	25	34	17.9574
ccc]eeeee	chr2:231902758-231902992(+)$1	234	96	105	15.9361
eeeeeccc"	chr15:78369842-78370059(-)$1	217	80	89	18.2765
JJJJJJJJJ	chr11:65325150-65325431(-)$1	281	107	116	20.5106
bBBA}CCC}	chr16:4660094-4660317(-)$1	223	187	196	16.0425
ooooodddd	chr19:460720-460967(-)$1	247	206	215	16.1489
eeeeeeeee	chr8:145687815-145688067(-)$1	252	176	185	17.3191
dddd]eeee	chr17:79860506-79860775(-)$1	269	85	94	15.0851
{EEEEEMMM	chr19:35500162-35500505(+)$1	343	13	22	14.5531
FFF{GGGGG	chr20:62371148-62371379(+)$1	231	93	102	15.9361
uuuuggggg	chr1:28845142-28845411(+)$1	269	247	256	14.1276
d"""cccii	chr1:227164984-227165296(+)$1	312	177	186	17.3191
dddhhhhhh	chr1:2160039-2160323(+)$1	284	83	92	17.9574
iiiiiiii:	chr9:136223066-136223330(-)$1	264	239	248	17.1063
ffffff:::	chr22:37964458-37964720(+)$1	262	250	259	16.0425
eee[fffff	chr1:27320725-27320996(+)$1	271	120	129	20.5106
33ccc:eee	chr15:78369860-78370070(-)$1	210	91	100	18.2765
HHHHH{DDD	chr17:79913316-79913634(-)$1	318	38	47	18.2765
ffffdddd[	chr22:39134582-39134837(+)$1	255	159	168	17.2127
DDDDZZZGG	chr19:1585104-1585373(-)$1	269	204	213	16.0425
eaeeeee::	chr19:1253807-1254083(+)$1	276	99	108	14.4468
pdddd====	chr7:150777690-150777949(-)$1	259	41	50	14.2340
A}EEEEE||	chrX:53222296-53222536(-)$1	240	207	216	14.0212
5dddd]fff	chr16:89894848-89895104(+)$1	256	113	122	18.2765
ccccc22gg	chr16:87426130-87426483(+)$1	353	156	165	17.9574
fff"""bb[	chr19:460530-460774(-)$1	244	13	22	16.1489
:ggggggg[	chr1:27022734-27023050(+)$1	316	48	57	18.2765
eeee"""gg	chr2:231902513-231902748(+)$1	235	178	187	17.9574
ddbb[ammm	chr2:42275202-42275460(+)$1	258	8	17	15.0851
]ddddffff	chr4:1231769-1232072(-)$1	303	118	127	15.4042
eeeeeccc"	chr15:78369834-78370042(-)$1	208	63	72	18.2765
JJJJJJJJJ	chr12:58005524-58005834(+)$1	310	292	301	14.1276
[ccc"""ff	chr7:150777749-150777982(-)$1	233	74	83	14.2340
mmmmfffff	chr11:637284-637535(+)$1	251	7	16	18.2765
dddd!!bbn	chr22:37964575-37964818(+)$1	243	133	142	16.0425
meeeee22e	chr4:985899-986170(-)$1	271	159	168	14.4468
HH{GGGGGG	chr14:105173889-105174168(+)$1	279	108	117	18.2765
:ccc[bb[c	chr17:36878231-36878475(+)$1	244	9	18	15.4042
]bb]dddd]	chr17:7311430-7311681(+)$1	251	232	241	17.6382
ggggnnnnn	chr21:47565651-47565894(-)$1	243	54	63	15.7234

#DB
(((((((.(	chr12:57919676-57919916(+)$1	1	10	19	15.4042
)....))))	chr16:24741064-24741358(+)$1	1	219	228	15.9361
(((((((((	chr9:97767347-97767605(+)$1	1	113	122	17.9574
(((...)).	chr1:110169640-110169927(+)$1	1	220	229	14.8723
((..(((..	chr12:132402900-132403145(+)$1	1	184	193	17.6382
((((...((	chr1:38274022-38274309(+)$1	1	64	73	15.0851
.((((((((	chr17:16347304-16347550(+)$1	1	107	116	14.2340
.(((((((.	chr17:46985879-46986153(+)$1	1	25	34	17.9574
))).)))))	chr2:231902758-231902992(+)$1	1	96	105	15.9361
((((((((.	chr15:78369842-78370059(-)$1	1	80	89	18.2765
)))))))))	chr11:65325150-65325431(-)$1	1	107	116	20.5106
)))).))).	chr16:4660094-4660317(-)$1	1	187	196	16.0425
.....))))	chr19:460720-460967(-)$1	1	206	215	16.1489
(((((((((	chr8:145687815-145688067(-)$1	1	176	185	17.3191
)))).))))	chr17:79860506-79860775(-)$1	1	85	94	15.0851
.(((((...	chr19:35500162-35500505(+)$1	1	13	22	14.5531
(((.(((((	chr20:62371148-62371379(+)$1	1	93	102	15.9361
....)))))	chr1:28845142-28845411(+)$1	1	247	256	14.1276
(...(((((	chr1:227164984-227165296(+)$1	1	177	186	17.3191
)))))))))	chr1:2160039-2160323(+)$1	1	83	92	17.9574
)))))))).	chr9:136223066-136223330(-)$1	1	239	248	17.1063
))))))...	chr22:37964458-37964720(+)$1	1	250	259	16.0425
(((.(((((	chr1:27320725-27320996(+)$1	1	120	129	20.5106
..))).(((	chr15:78369860-78370070(-)$1	1	91	100	18.2765
(((((.(((	chr17:79913316-79913634(-)$1	1	38	47	18.2765
))))((((.	chr22:39134582-39134837(+)$1	1	159	168	17.2127
))))...))	chr19:1585104-1585373(-)$1	1	204	213	16.0425
)))))))..	chr19:1253807-1254083(+)$1	1	99	108	14.4468
.))))))))	chr7:150777690-150777949(-)$1	1	41	50	14.2340
).)))))..	chrX:53222296-53222536(-)$1	1	207	216	14.0212
.)))).)))	chr16:89894848-89895104(+)$1	1	113	122	18.2765
)))))..))	chr16:87426130-87426483(+)$1	1	156	165	17.9574
(((...((.	chr19:460530-460774(-)$1	1	13	22	16.1489
.(((((((.	chr1:27022734-27023050(+)$1	1	48	57	18.2765
((((...((	chr2:231902513-231902748(+)$1	1	178	187	17.9574
((((.(...	chr2:42275202-42275460(+)$1	1	8	17	15.0851
.))))))))	chr4:1231769-1232072(-)$1	1	118	127	15.4042
((((((((.	chr15:78369834-78370042(-)$1	1	63	72	18.2765
)))))))))	chr12:58005524-58005834(+)$1	1	292	301	14.1276
.(((...((	chr7:150777749-150777982(-)$1	1	74	83	14.2340
....)))))	chr11:637284-637535(+)$1	1	7	16	18.2765
((((..((.	chr22:37964575-37964818(+)$1	1	133	142	16.0425
.)))))..)	chr4:985899-986170(-)$1	1	159	168	14.4468
((.((((((	chr14:105173889-105174168(+)$1	1	108	117	18.2765
.(((.((.(	chr17:36878231-36878475(+)$1	1	9	18	15.4042
.)).)))).	chr17:7311430-7311681(+)$1	1	232	241	17.6382
((((.....	chr21:47565651-47565894(-)$1	1	54	63	15.7234

#PSSM
G : 0.59	g : 0.31	u : 0.04	C : 0.02	A : 0.02	
C : 0.51	c : 0.36	U : 0.06	G : 0.04	A : 0.02	
C : 0.63	c : 0.36	
U : 0.51	u : 0.12	g : 0.10	c : 0.10	C : 0.08	A : 0.04	G : 0.02	
G : 0.61	g : 0.34	C : 0.02	c : 0.02	
G : 0.61	g : 0.36	A : 0.02	
G : 0.59	g : 0.34	A : 0.04	C : 0.02	
C : 0.40	c : 0.27	G : 0.19	A : 0.06	g : 0.04	U : 0.02	
G : 0.44	g : 0.27	C : 0.10	U : 0.08	A : 0.04	c : 0.04	

#score	776.0212765957446
#seq	47
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_transcript_m3_run1.nuc.txt

#NT
ugaguaccugggauuacaggcacgcaccaccacgccca	chr11:61133852-61134111(+)$1	259	211	249	73.2741
caaguagcugggauuacaggugugcaccaccaugcccg	chr15:41572623-41572896(+)$1	273	210	248	76.6612
ugaguaucugggauuacaggcaugcaccaccaugccgg	chr3:152035022-152035285(+)$1	263	210	248	72.0645
ugaguagcugggacuacaggcacaugccaccaugccug	chr8:23391541-23391800(+)$1	259	44	82	75.4516
caaguagcugggauuacagguaccugccaccacaccug	chr12:107360946-107361198(+)$1	252	214	252	71.9838
caaguagcugggacuacagguaugugccaccacgccca	chr8:124092689-124092976(+)$1	287	211	249	77.7096
caaguagcugggauuacaggcaugugccaccacgcccg	chr22:19480859-19481131(+)$1	272	231	269	81.4999
cgaguagcugggauuacaggcgugugccaccgcaccgg	chr14:21735100-21735361(-)$1	261	218	256	72.5483
cgaguagcugggauuacaggcgugcaccaccaugccca	chr12:93780623-93780884(+)$1	261	208	246	78.8387
caaguagcugggacuacaggcauccaccaccacuccca	chr1:246343892-246344168(-)$1	276	214	252	72.2258
caaguagcugggaucacaggcaugugccaccaugcccg	chrX:41199078-41199325(+)$1	247	207	245	76.5806
ugaguagcugggauuacaggcaugugccagcaugcaug	chr4:39706437-39706666(+)$1	229	177	215	70.4516
ugaguggcugggauuacaggugugugcuaccaugccug	chr22:22215550-22215784(-)$1	234	183	221	68.6774
caaguagcugggacuacaggcaugcgccacuauaucca	chr22:20924956-20925229(+)$1	273	219	257	69.0806
uggguggcugagauuacaggcgugcgacaccaugccca	chr3:195802855-195803118(-)$1	263	216	254	62.5483
ugaguagcugggauuacaggcaccugccacuacgcccg	chr8:11662024-11662286(+)$1	262	215	253	74.1612
ugaguagcugggauuacaggugcacgccaccacaccca	chr11:9601919-9602175(+)$1	256	209	247	72.8709
ccaguagcugggauuacaggcaugcaccacuaugccca	chr1:38049884-38050153(-)$1	269	210	248	72.7903
ucccaagcugggacuacaggcaugugccaccacacccg	chr7:91610832-91611099(+)$1	267	211	249	63.1935
cgaguagcuggaacuacaggcaugcaccaccaugccca	chr16:21522448-21522718(-)$1	270	204	242	73.9193
ugaguagcugggauuacaggugcaugccaccaggcccc	chr11:65180375-65180662(+)$1	287	208	246	70.2903
ugaguagcugggacuacagguacccaccaccacacUUG	chr6:7162991-7163267(+)$1	276	215	253	65.0483
caaguagcugggacugcaggcgccugccacuacgcccg	chr2:152655010-152655314(-)$1	304	213	251	67.7903
ggaguagcugggacuacaggccagugccaccauguccg	chr6:99866870-99867137(-)$1	267	218	256	68.6774
caaauagcugggacuacaggcacaggccaccacaccug	chr21:34896523-34896795(-)$1	272	44	82	67.0645
caaguaacugggacuacaggcaugugccaccaugccca	chr1:54855254-54855473(-)$1	219	30	68	75.0483
cagguagcugggauuacaggcgcccacuaccacaccag	chr5:81572854-81573102(-)$1	248	205	243	61.7419
ugaguagcugggacuacaggcaugugacacuaugccug	chr7:75155542-75155807(-)$1	265	208	246	70.3709
caaguagcugggacuacaggcaugcaccaccacgcccg	chr12:123077723-123077977(+)$1	254	211	249	78.7580
caaguagcugggauuauaggcaugugccaccaugccca	chr11:63458503-63458780(+)$1	277	213	251	76.0161
ucaguagcugagauuacaggcaugcaccaccaugcccg	chr17:40732902-40733161(-)$1	259	210	248	72.9516
cagguagcugggacuacaggcaugagccaccacaccca	chr19:11235509-11235742(+)$1	233	179	217	71.5806
ucaauagcugggacuacaggcgugagccaccaugccua	chr9:133623708-133623965(+)$1	257	215	253	69.4838
ugaguagcugagacuacaggcgcgugccaccacgccca	chr9:123522757-123523023(-)$1	266	224	262	74.3225
cgaguagcugggaguacaggcacgugccaccacuacug	chr2:168775940-168776212(-)$1	272	204	242	68.7580
caaguagcugggauuacaagcaugugccaccaugccug	chr11:85749213-85749468(-)$1	255	213	251	74.9677
ugaguagcugguauuacaggugugcgccaccaugcccg	chr7:140161236-140161540(-)$1	304	214	252	74.4838
cgaguagcugggacuacaggcguguaccaccgcgccug	chr1:28833188-28833414(+)$1	226	149	187	72.8709
agaauagcugggacuacaggugcccgccaccacgccug	chr4:71776427-71776666(+)$1	239	201	239	67.0645
ccaguagcugggauuacaggcgcaugccaccauaccca	chr4:39708735-39709028(+)$1	293	215	253	72.8709
cgaguagcugggacuauaggugugcaccaccacaccca	chr7:120718062-120718283(+)$1	221	160	198	69.8870
caaguagcugggacuauaggugugugccaccacaccca	chr6:4799595-4799861(+)$1	266	208	246	71.0161
caaguagcugagacuauaggugugugccaccacaccca	chr1:53347492-53347763(+)$1	271	198	236	66.6612
cgaguagcugggacuacaggcacccgccaccaugccca	chr3:6612131-6612395(+)$1	264	213	251	76.9838
caaguagcugggauuacaggcaugcgccaccacgcuca	chr21:45179969-45180232(+)$1	263	212	250	76.0967
caaguagcugggauuacaggcauacaccaccacacccg	chr8:23405937-23406149(+)$1	212	170	208	75.0483
ugaguaccugggauuacaggugcgcgccaccaugccug	chr12:57033212-57033496(-)$1	284	48	86	71.6612
ugaguagcugggauuacaggcgcacaccaccacgcccg	chr20:49536643-49536907(-)$1	264	200	238	75.7741
caaguagcugggauuacagacgugugccaccauaccug	chr15:41573168-41573454(+)$1	286	12	50	72.3064
ugaguagcuggaacuacaggugugcgccaccacgccca	chr6:150047394-150047638(-)$1	244	203	241	73.1935
ugaguagcugggauuacaaggacccgccgccaugcccg	chr7:119379619-119379870(-)$1	251	212	250	65.4516
caaguagcggggaucacaggcaugagccgccacacccg	chr19:2233577-2233852(-)$1	275	221	259	63.4354
ugaguagcugggauuacaggcacacgccaccacaccca	chr7:128693220-128693488(-)$1	268	216	254	75.4516
cgaguagcugggacuacaggcgcaugccaccacaccca	chr20:36699053-36699309(+)$1	256	204	242	74.7258
ugaauagcugggauuacaggcgugcaccaccaugcccg	chr10:11926546-11926813(-)$1	267	210	248	75.1290
caaagugcugggauuacaggcgugagccaccgugccgg	chr1:202773818-202774098(-)$1	280	202	240	58.0322
ugaguagcugggacuacaagugugcaccaccaugccug	chr7:56147870-56148185(+)$1	315	210	248	70.0483
caaguagcugggauuacaggugccugccaccacgccug	chr9:133751704-133751975(+)$1	271	224	262	73.5161
ugaguagcugggauuacaggcaugcaccacaacgccug	chr14:23533915-23534200(-)$1	285	201	239	73.6774
ugaguagcugggauuacaggcacccgcuaucaugccca	chr16:259029-259287(-)$1	258	211	249	68.2741
ugaguggcugggauuacaggugugugcuaccaugccug	chr22:22215523-22215750(-)$1	227	149	187	68.6774

#otherMatches

#Struct PSSM
fffffggggggg%%%%%%cccmmmmccc666666gggg	chr2:168784564-168784799(-)$1	235	184	222	67.7096
eeee55555ffffff:A}FFFFFF~~~~BBBB}CCC::	chr11:61133852-61134111(+)$1	259	211	249	73.2741
::::::HHHHHHHHZZZCCC}FFFFFF:::::::::a[	chr15:41572623-41572896(+)$1	273	210	248	76.6612
dddd55555hhhhhhhh:ffffffooooooffffff::	chr3:152035022-152035285(+)$1	263	210	248	72.0645
ddd333ggggggg:::::cccmmmmccc::hhhhhhhh	chr8:23391541-23391800(+)$1	259	44	82	75.4516
mmma22ffffff:HHHHHHHH}A}CCC}CCC:::::::	chr12:107360946-107361198(+)$1	252	214	252	71.9838
++++hhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr8:124092689-124092976(+)$1	287	211	249	77.7096
:::::ggggggg%%%%%%cccmmmmccc666666gggg	chr22:19480859-19481131(+)$1	272	231	269	81.4999
eeooooooeeeee333addddeeeeemmmmeeeee:EE	chr14:21735100-21735361(-)$1	261	218	256	72.5483
:===========%%%%%%bboooooobb666666====	chr12:93780623-93780884(+)$1	261	208	246	78.8387
::CCCHHHHHHHH______CCC}FFFFFF}FFFFFF}D	chr1:246343892-246344168(-)$1	276	214	252	72.2258
mmma22ffffff::::a[ffffffooooooffffff]a	chrX:41199078-41199325(+)$1	247	207	245	76.5806
mmma22hhhhhhhh::::DDDD}A}CCCFFFFFFYYEE	chr4:39706437-39706666(+)$1	229	177	215	70.4516
qqqqqggggggg::::hhhhhhhhoooooohhhhhhhh	chr22:22215550-22215784(-)$1	234	183	221	68.6774
eeooooooeeeee]bb]eeeeeIIIIIIIIIZZZFFFF	chr22:20924956-20925229(+)$1	273	219	257	69.0806
qqqqqggggggg::::::ffffffooooooffffff::	chr3:195802855-195803118(-)$1	263	216	254	62.5483
eeeehhhhhhhh!!bb!!cccmmmmccc22bb22hhhh	chr8:11662024-11662286(+)$1	262	215	253	74.1612
hhhhhhhhhhhh%%%%%%ddddnnnnndddd333hhhh	chr11:9601919-9602175(+)$1	256	209	247	72.8709
::::hhhhhhhh!!bb!!bboooooobb22bb22hhhh	chr1:38049884-38050153(-)$1	269	210	248	72.7903
hlllhhhhhhhh::ffffff[bb!!cccrrrrrrrrrc	chr7:91610832-91611099(+)$1	267	211	249	63.1935
ddddggggggg''''''''eeeeeooooooeeeeeggg	chr16:21522448-21522718(-)$1	270	204	242	73.9193
eeeeBB}IIIIIIIIIYYBB}BB}EEEEE}EEEEE:::	chr11:65180375-65180662(+)$1	287	208	246	70.2903
EYYIIIIIIIII?????DDDD////////CCCYYEEEE	chr6:7162991-7163267(+)$1	276	215	253	65.0483
eeeehhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr2:152655010-152655314(-)$1	304	213	251	67.7903
qccchhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr6:99866870-99867137(-)$1	267	218	256	68.6774
ddddhhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr21:34896523-34896795(-)$1	272	44	82	67.0645
EE{CCCKKEEEEE:::::ffffffooooooffffff::	chr1:54855254-54855473(-)$1	219	30	68	75.0483
2dddd]bb]dddd666666dddd22ccc22iiiiiiii	chr5:81572854-81573102(-)$1	248	205	243	61.7419
mmma22ffffff::::hhhhhhhhoooooohhhhhhhh	chr7:75155542-75155807(-)$1	265	208	246	70.3709
DDDDhhhhhhhh%%%%%%bboooooobb666666hhhh	chr12:123077723-123077977(+)$1	254	211	249	78.7580
ddddhhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr11:63458503-63458780(+)$1	277	213	251	76.0161
mmma22ffffff::::::ffffffooooooffffffEE	chr17:40732902-40733161(-)$1	259	210	248	72.9516
EEE:hhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr19:11235509-11235742(+)$1	233	179	217	71.5806
DDDDhhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr9:133623708-133623965(+)$1	257	215	253	69.4838
mmma22ffffff::::::bb[eeeeemmmmeeeeebbD	chr9:123522757-123523023(-)$1	266	224	262	74.3225
ggooooooggggggg:FFFFFF:::ddddpppppppdd	chr2:168775940-168776212(-)$1	272	204	242	68.7580
:EEEEE}FFFFFF______CCCZZZEEEEE}EEEEE}B	chr11:85749213-85749468(-)$1	255	213	251	74.9677
mccc22ccceeeee]dddd]ccc7777777ddddEEEE	chr7:140161236-140161540(-)$1	304	214	252	74.4838
eeooooooeeeee:::hhhhhhhhoooooohhhhhhhh	chr1:28833188-28833414(+)$1	226	149	187	72.8709
ssssssffffff::::ffffffssssssssssffffff	chr4:71776427-71776666(+)$1	239	201	239	67.0645
=:::hhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr4:39708735-39709028(+)$1	293	215	253	72.8709
::::hhhhhhhh%%%%%%ddddnnnnndddd333hhhh	chr7:120718062-120718283(+)$1	221	160	198	69.8870
:bb[hhhhhhhh%%%%%%ddddnnnnndddd333hhhh	chr6:4799595-4799861(+)$1	266	208	246	71.0161
ddddffffff''''''''ffffffooooooffffffff	chr1:53347492-53347763(+)$1	271	198	236	66.6612
ffffhhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr3:6612131-6612395(+)$1	264	213	251	76.9838
ddddhhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr21:45179969-45180232(+)$1	263	212	250	76.0967
EEEEhhhhhhhh%%%%%%bboooooobb666666hhhh	chr8:23405937-23406149(+)$1	212	170	208	75.0483
eeee:HHHHHHHH:::::FFFFFF{BBCCC:::fffff	chr12:57033212-57033496(-)$1	284	48	86	71.6612
&&&&hhhhhhhh%%%%%%bboooooobb666666hhhh	chr20:49536643-49536907(-)$1	264	200	238	75.7741
mmma22ffffff::::::EEEEE{EEEEEcccmmmmcc	chr15:41573168-41573454(+)$1	286	12	50	72.3064
eeee22bb]ccc:::::DDDD}IIIIIIIII}CCCEEE	chr6:150047394-150047638(-)$1	244	203	241	73.1935
ddddddd22hhhhhhhh22ggggggg::::::::CCC:	chr7:119379619-119379870(-)$1	251	212	250	65.4516
vvvdddd]iiiiiiiii::EEEEE}FFFFFFZZZCCC}	chr19:2233577-2233852(-)$1	275	221	259	63.4354
::::hhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr7:128693220-128693488(-)$1	268	216	254	75.4516
3ccchhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr20:36699053-36699309(+)$1	256	204	242	74.7258
qqqqqggggggg::::::ffffffooooooffffff:A	chr10:11926546-11926813(-)$1	267	210	248	75.1290
b333dddd22gggggggddddiiiiiiiii]bb]hhhh	chr1:202773818-202774098(-)$1	280	202	240	58.0322
mmma22ffffffhhhhhhhh[bb[bb&&&&&&&bblll	chr7:56147870-56148185(+)$1	315	210	248	70.0483
eeooooooeeeee::::eeeeesssssssssseeeeeD	chr9:133751704-133751975(+)$1	271	224	262	73.5161
2ccc22bbEEEEE:::eeeeeuuuuuuuuuuuueeeee	chr14:23533915-23534200(-)$1	285	201	239	73.6774
eeeehhhhhhhh%%%%%%cccmmmmccc666666hhhh	chr16:259029-259287(-)$1	258	211	249	68.2741
:FFFFFFDDDD:::::hhhhhhhhoooooohhhhhhhh	chr22:22215523-22215750(-)$1	227	149	187	68.6774

#DB
)))))(((((((......(((....)))......))))	chr2:168784564-168784799(-)$1	1	184	222	67.7096
)))).....)))))).).))))))....)))).)))..	chr11:61133852-61134111(+)$1	1	211	249	73.2741
......))))))))...))).)))))).........(.	chr15:41572623-41572896(+)$1	1	210	248	76.6612
)))).....)))))))).((((((......))))))..	chr3:152035022-152035285(+)$1	1	210	248	72.0645
)))...))))))).....(((....)))..((((((((	chr8:23391541-23391800(+)$1	1	44	82	75.4516
...)..)))))).)))))))).).))).))).......	chr12:107360946-107361198(+)$1	1	214	252	71.9838
....((((((((......(((....)))......))))	chr8:124092689-124092976(+)$1	1	211	249	77.7096
.....(((((((......(((....)))......))))	chr22:19480859-19481131(+)$1	1	231	269	81.4999
((......)))))...)))))(((((....))))).))	chr14:21735100-21735361(-)$1	1	218	256	72.5483
.(((((((((((......((......))......))))	chr12:93780623-93780884(+)$1	1	208	246	78.8387
..)))))))))))......))).)))))).)))))).)	chr1:246343892-246344168(-)$1	1	214	252	72.2258
...)..))))))....(.((((((......)))))).)	chrX:41199078-41199325(+)$1	1	207	245	76.5806
...)..))))))))....)))).).)))))))))..))	chr4:39706437-39706666(+)$1	1	177	215	70.4516
.....)))))))....((((((((......))))))))	chr22:22215550-22215784(-)$1	1	183	221	68.6774
((......))))).)).))))))))))))))...))))	chr22:20924956-20925229(+)$1	1	219	257	69.0806
.....)))))))......((((((......))))))..	chr3:195802855-195803118(-)$1	1	216	254	62.5483
))))((((((((..((..(((....)))..))..))))	chr8:11662024-11662286(+)$1	1	215	253	74.1612
))))((((((((......((((.....))))...))))	chr11:9601919-9602175(+)$1	1	209	247	72.8709
....((((((((..((..((......))..))..))))	chr1:38049884-38050153(-)$1	1	210	248	72.7903
(...))))))))..((((((.((..(((.........)	chr7:91610832-91611099(+)$1	1	211	249	63.1935
(((((((((((........(((((......))))))))	chr16:21522448-21522718(-)$1	1	204	242	73.9193
)))))).)))))))))..)).)).))))).)))))...	chr11:65180375-65180662(+)$1	1	208	246	70.2903
)..))))))))).....))))........)))..))))	chr6:7162991-7163267(+)$1	1	215	253	65.0483
((((((((((((......(((....)))......))))	chr2:152655010-152655314(-)$1	1	213	251	67.7903
.)))((((((((......(((....)))......))))	chr6:99866870-99867137(-)$1	1	218	256	68.6774
((((((((((((......(((....)))......))))	chr21:34896523-34896795(-)$1	1	44	82	67.0645
((.(((..(((((.....((((((......))))))..	chr1:54855254-54855473(-)$1	1	30	68	75.0483
.)))).)).))))......))))..)))..))))))))	chr5:81572854-81573102(-)$1	1	205	243	61.7419
...)..))))))....((((((((......))))))))	chr7:75155542-75155807(-)$1	1	208	246	70.3709
))))((((((((......((......))......))))	chr12:123077723-123077977(+)$1	1	211	249	78.7580
((((((((((((......(((....)))......))))	chr11:63458503-63458780(+)$1	1	213	251	76.0161
...)..))))))......((((((......))))))))	chr17:40732902-40733161(-)$1	1	210	248	72.9516
))).((((((((......(((....)))......))))	chr19:11235509-11235742(+)$1	1	179	217	71.5806
))))((((((((......(((....)))......))))	chr9:133623708-133623965(+)$1	1	215	253	69.4838
...)..))))))......((.(((((....))))))))	chr9:123522757-123523023(-)$1	1	224	262	74.3225
((......))))))).))))))...((((.......))	chr2:168775940-168776212(-)$1	1	204	242	68.7580
.))))).))))))......)))...))))).))))).)	chr11:85749213-85749468(-)$1	1	213	251	74.9677
.)))..)))))))).)))).))).......))))))))	chr7:140161236-140161540(-)$1	1	214	252	74.4838
((......)))))...((((((((......))))))))	chr1:28833188-28833414(+)$1	1	149	187	72.8709
......))))))....((((((..........))))))	chr4:71776427-71776666(+)$1	1	201	239	67.0645
)...((((((((......(((....)))......))))	chr4:39708735-39709028(+)$1	1	215	253	72.8709
....((((((((......((((.....))))...))))	chr7:120718062-120718283(+)$1	1	160	198	69.8870
.((.((((((((......((((.....))))...))))	chr6:4799595-4799861(+)$1	1	208	246	71.0161
((((((((((........((((((......))))))))	chr1:53347492-53347763(+)$1	1	198	236	66.6612
))))((((((((......(((....)))......))))	chr3:6612131-6612395(+)$1	1	213	251	76.9838
((((((((((((......(((....)))......))))	chr21:45179969-45180232(+)$1	1	212	250	76.0967
))))((((((((......((......))......))))	chr8:23405937-23406149(+)$1	1	170	208	75.0483
)))).)))))))).....((((((.(((((...(((((	chr12:57033212-57033496(-)$1	1	48	86	71.6612
....((((((((......((......))......))))	chr20:49536643-49536907(-)$1	1	200	238	75.7741
...)..))))))......(((((.((((((((....))	chr15:41573168-41573454(+)$1	1	12	50	72.3064
))))..)).))).....)))).))))))))).))))))	chr6:150047394-150047638(-)$1	1	203	241	73.1935
)))))))..))))))))..)))))))........))).	chr7:119379619-119379870(-)$1	1	212	250	65.4516
...)))).)))))))))..))))).))))))...))).	chr19:2233577-2233852(-)$1	1	221	259	63.4354
....((((((((......(((....)))......))))	chr7:128693220-128693488(-)$1	1	216	254	75.4516
.)))((((((((......(((....)))......))))	chr20:36699053-36699309(+)$1	1	204	242	74.7258
.....)))))))......((((((......)))))).)	chr10:11926546-11926813(-)$1	1	210	248	75.1290
)...))))..)))))))))))))))))))).)).))))	chr1:202773818-202774098(-)$1	1	202	240	58.0322
...)..))))))((((((((.((.((.......((...	chr7:56147870-56148185(+)$1	1	210	248	70.0483
((......)))))....(((((..........))))))	chr9:133751704-133751975(+)$1	1	224	262	73.5161
.)))..)))))))...(((((............)))))	chr14:23533915-23534200(-)$1	1	201	239	73.6774
))))((((((((......(((....)))......))))	chr16:259029-259287(-)$1	1	211	249	68.2741
.)))))))))).....((((((((......))))))))	chr22:22215523-22215750(-)$1	1	149	187	68.6774

#PSSM
c : 0.53	u : 0.43	g : 0.01	a : 0.01	
g : 0.54	a : 0.37	c : 0.08	
a : 0.93	g : 0.04	c : 0.01	
g : 0.90	a : 0.08	c : 0.01	
u : 0.95	c : 0.01	a : 0.01	g : 0.01	
a : 0.93	g : 0.04	u : 0.01	
g : 0.93	c : 0.03	u : 0.01	a : 0.01	
c : 0.99	
u : 0.98	g : 0.01	
g : 0.99	
g : 0.93	a : 0.06	
g : 0.95	a : 0.03	u : 0.01	
a : 0.99	
u : 0.56	c : 0.41	g : 0.01	
u : 0.96	c : 0.03	
a : 0.98	g : 0.01	
c : 0.93	u : 0.06	
a : 0.99	
g : 0.95	a : 0.04	
g : 0.98	a : 0.01	
c : 0.70	u : 0.27	g : 0.01	
a : 0.53	g : 0.45	c : 0.01	
u : 0.61	c : 0.37	a : 0.01	
g : 0.66	c : 0.17	a : 0.16	
c : 0.46	u : 0.45	a : 0.06	g : 0.01	
g : 0.70	a : 0.29	
c : 0.96	a : 0.03	
c : 0.91	u : 0.08	
a : 0.96	g : 0.03	
c : 0.96	g : 0.01	u : 0.01	
c : 0.90	u : 0.08	a : 0.01	
a : 0.95	g : 0.04	
c : 0.51	u : 0.46	g : 0.01	
g : 0.67	a : 0.29	u : 0.03	
c : 0.95	u : 0.03	a : 0.01	
c : 0.95	a : 0.01	U : 0.01	u : 0.01	
c : 0.64	u : 0.27	g : 0.04	U : 0.01	a : 0.01	
g : 0.56	a : 0.40	c : 0.01	G : 0.01	

#score	4439.4516129032245
#seq	62
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_transcript_m2_run1.nuc.txt

#NT
UGU	chr22:50032194-50032445(-)$1	251	90	93	9.0000
UGU	chr19:34879617-34879847(+)$1	230	18	21	9.0000
UGU	chrM:12069-12306(+)$1	237	0	3	9.0000
UGU	chr15:66794315-66794531(-)$1	216	70	73	9.0000
ugu	chr11:47377093-47377383(-)$1	290	5	8	9.0000
ugu	chr7:98479338-98479545(+)$1	207	26	29	9.0000
UGU	chr22:49992249-49992521(-)$1	272	103	106	9.0000
UGU	chr22:19977259-19977514(-)$1	255	2	5	9.0000
UGU	chr19:3982407-3982666(-)$1	259	133	136	9.0000
UGU	chr9:136132879-136133108(-)$1	229	110	113	9.0000
UGU	chr6:31504067-31504301(-)$1	234	0	3	9.0000
UGU	chr1:228330434-228330684(+)$1	250	101	104	9.0000
UGU	chr12:98993341-98993554(+)$1	213	23	26	9.0000
ugu	chr12:124951181-124951531(-)$1	350	52	55	9.0000
UGU	chr5:154136566-154136830(+)$1	264	101	104	9.0000
UGU	chr1:22155427-22155672(-)$1	245	29	32	9.0000
UGU	chr12:123994631-123994887(-)$1	256	23	26	9.0000
UGU	chr22:20068779-20069080(+)$1	301	39	42	9.0000
UGU	chr14:21860242-21860472(-)$1	230	64	67	9.0000
UGU	chr12:112035314-112035563(-)$1	249	16	19	9.0000
ugu	chr17:8076672-8076904(-)$1	232	23	26	9.0000
UGU	chr21:46576566-46576833(+)$1	267	41	44	9.0000
UGU	chr15:89444583-89444832(-)$1	249	174	177	9.0000
UGU	chr2:97550897-97551143(-)$1	246	9	12	9.0000
UGU	chr3:128213036-128213278(+)$1	242	5	8	9.0000
UGU	chr5:649568-649811(+)$1	243	1	4	9.0000
UGU	chr13:92000161-92000439(+)$1	278	89	92	9.0000
UGU	chr16:2204997-2205207(-)$1	210	8	11	9.0000
UGU	chr2:97532477-97532687(-)$1	210	5	8	9.0000
UGU	chr16:88963045-88963309(-)$1	264	141	144	9.0000
ugu	chr7:98479351-98479560(+)$1	209	13	16	9.0000
UGU	chr22:20004105-20004395(-)$1	290	0	3	9.0000
UGU	chr4:78740041-78740317(-)$1	276	17	20	9.0000
UGU	chr22:49993579-49993824(-)$1	245	114	117	9.0000
ugu	chr11:17097223-17097470(-)$1	247	3	6	9.0000
UGU	chr22:50034466-50034748(-)$1	282	113	116	9.0000
UGU	chr17:27047492-27047726(+)$1	234	17	20	9.0000
UGU	chr9:139621154-139621374(-)$1	220	66	69	9.0000
UGU	chr19:34879004-34879220(+)$1	216	10	13	9.0000
UGU	chr3:128214508-128214768(+)$1	260	45	48	9.0000
UGU	chr21:44268655-44268916(-)$1	261	21	24	9.0000
UGU	chr19:1410903-1411144(+)$1	241	35	38	9.0000
UGU	chr11:811622-811842(+)$1	220	32	35	9.0000
UGU	chr7:98479270-98479506(+)$1	236	42	45	9.0000
UGU	chrX:135961268-135961484(-)$1	216	13	16	9.0000
UGU	chr2:97534846-97535110(-)$1	264	39	42	9.0000
UGU	chr16:89042874-89043148(-)$1	274	13	16	9.0000
UGU	chr5:651408-651749(+)$1	341	2	5	9.0000
UGU	chr11:75115364-75115613(+)$1	249	6	9	9.0000
UGU	chr19:1415698-1415950(+)$1	252	47	50	9.0000
UGU	chrX:152956037-152956323(+)$1	286	63	66	9.0000
UGU	chr13:114564161-114564384(-)$1	223	11	14	9.0000
ugu	chr21:44269068-44269304(-)$1	236	5	8	9.0000
UGU	chr11:811679-811891(+)$1	212	30	33	9.0000
UGU	chr16:88960027-88960302(-)$1	275	44	47	9.0000
UGU	chr22:50021636-50021901(-)$1	265	28	31	9.0000
ugu	chr21:39429486-39429779(-)$1	293	225	228	9.0000
UGU	chrX:135961289-135961521(-)$1	232	50	53	9.0000
UGU	chr7:98479312-98479517(+)$1	205	0	3	9.0000
ugu	chr8:9628389-9628679(+)$1	290	30	33	9.0000
UGU	chr7:5569349-5569609(-)$1	260	30	33	9.0000
UGU	chr10:43902711-43902979(-)$1	268	111	114	9.0000
UGU	chr22:19710374-19710612(+)$1	238	77	80	9.0000
UGU	chr2:203157675-203157880(+)$1	205	11	14	9.0000
ugu	chr12:133272118-133272359(+)$1	241	46	49	9.0000
UGU	chr1:12644031-12644309(-)$1	278	50	53	9.0000
UGU	chr2:10538775-10539081(+)$1	306	194	197	9.0000
UGU	chr19:47730944-47731185(-)$1	241	15	18	9.0000
UGU	chr16:88587438-88587746(+)$1	308	136	139	9.0000
UGU	chr15:66794269-66794504(-)$1	235	43	46	9.0000
UGU	chr11:75115413-75115630(+)$1	217	3	6	9.0000
UGU	chr19:34882607-34882896(+)$1	289	9	12	9.0000
UGU	chr12:123994571-123994831(-)$1	260	12	15	9.0000
ugu	chr19:893460-893690(+)$1	230	172	175	9.0000
UGU	chr19:4035174-4035434(+)$1	260	50	53	9.0000
UGU	chr17:73892406-73892773(-)$1	367	88	91	9.0000
UGU	chr22:49982497-49982760(-)$1	263	9	12	9.0000
UGU	chr16:89359398-89359679(-)$1	281	1	4	9.0000
UGU	chrX:20154363-20154621(-)$1	258	48	51	9.0000
UGU	chr4:83816929-83817139(-)$1	210	0	3	9.0000
ugu	chr11:17096147-17096384(-)$1	237	139	142	9.0000
UGU	chr22:35738403-35738644(+)$1	241	2	5	9.0000
UGU	chrX:152956442-152956714(+)$1	272	30	33	9.0000
ugu	chr16:87771822-87772104(-)$1	282	23	26	9.0000
UGU	chr1:45242093-45242306(+)$1	213	9	12	9.0000
UGU	chr15:69110817-69111067(-)$1	250	96	99	9.0000
UGU	chr19:1409876-1410155(+)$1	279	146	149	9.0000
UGU	chr9:136132795-136133015(-)$1	220	17	20	9.0000
UGU	chr19:50000887-50001155(+)$1	268	71	74	9.0000
UGU	chr19:47732219-47732436(-)$1	217	2	5	9.0000
UGU	chr4:83816906-83817129(-)$1	223	49	52	9.0000
ugu	chr9:44990624-44990887(+)$1	263	40	43	9.0000
UGU	chr22:50018397-50018654(-)$1	257	53	56	9.0000
UGU	chr12:6619565-6619811(+)$1	246	24	27	9.0000
UGU	chr1:109642828-109643031(+)$1	203	19	22	9.0000
UGU	chr16:1425608-1425862(-)$1	254	16	19	9.0000
UGU	chr16:89367059-89367310(-)$1	251	32	35	9.0000
UGU	chr19:48259010-48259223(+)$1	213	77	80	9.0000
UGU	chr21:44268279-44268591(-)$1	312	3	6	9.0000

#otherMatches

#Struct PSSM
EA{	chr1:109642841-109643053(+)$1	212	6	9	9.0000
ggg	chr22:50032194-50032445(-)$1	251	90	93	9.0000
EE{	chr19:34879617-34879847(+)$1	230	18	21	9.0000
:::	chrM:12069-12306(+)$1	237	0	3	9.0000
cgg	chr15:66794315-66794531(-)$1	216	70	73	9.0000
:::	chr11:47377093-47377383(-)$1	290	5	8	9.0000
===	chr7:98479338-98479545(+)$1	207	26	29	9.0000
cc4	chr22:49992249-49992521(-)$1	272	103	106	9.0000
ddd	chr22:19977259-19977514(-)$1	255	2	5	9.0000
ncc	chr19:3982407-3982666(-)$1	259	133	136	9.0000
ggg	chr9:136132879-136133108(-)$1	229	110	113	9.0000
:FF	chr6:31504067-31504301(-)$1	234	0	3	9.0000
c[c	chr1:228330434-228330684(+)$1	250	101	104	9.0000
DDD	chr12:98993341-98993554(+)$1	213	23	26	9.0000
hhn	chr12:124951181-124951531(-)$1	350	52	55	9.0000
ooo	chr5:154136566-154136830(+)$1	264	101	104	9.0000
HH:	chr1:22155427-22155672(-)$1	245	29	32	9.0000
c]d	chr12:123994631-123994887(-)$1	256	23	26	9.0000
b[f	chr22:20068779-20069080(+)$1	301	39	42	9.0000
eee	chr14:21860242-21860472(-)$1	230	64	67	9.0000
{EE	chr12:112035314-112035563(-)$1	249	16	19	9.0000
ddd	chr17:8076672-8076904(-)$1	232	23	26	9.0000
eee	chr21:46576566-46576833(+)$1	267	41	44	9.0000
uuu	chr15:89444583-89444832(-)$1	249	174	177	9.0000
{EE	chr2:97550897-97551143(-)$1	246	9	12	9.0000
rrr	chr3:128213036-128213278(+)$1	242	5	8	9.0000
b##	chr5:649568-649811(+)$1	243	1	4	9.0000
ggg	chr13:92000161-92000439(+)$1	278	89	92	9.0000
:::	chr16:2204997-2205207(-)$1	210	8	11	9.0000
F{D	chr2:97532477-97532687(-)$1	210	5	8	9.0000
cce	chr16:88963045-88963309(-)$1	264	141	144	9.0000
mmm	chr7:98479351-98479560(+)$1	209	13	16	9.0000
:::	chr22:20004105-20004395(-)$1	290	0	3	9.0000
f::	chr4:78740041-78740317(-)$1	276	17	20	9.0000
hhh	chr22:49993579-49993824(-)$1	245	114	117	9.0000
FFF	chr11:17097223-17097470(-)$1	247	3	6	9.0000
gmm	chr22:50034466-50034748(-)$1	282	113	116	9.0000
bbl	chr17:27047492-27047726(+)$1	234	17	20	9.0000
fff	chr9:139621154-139621374(-)$1	220	66	69	9.0000
ccm	chr19:34879004-34879220(+)$1	216	10	13	9.0000
dnn	chr3:128214508-128214768(+)$1	260	45	48	9.0000
===	chr21:44268655-44268916(-)$1	261	21	24	9.0000
d""	chr19:1410903-1411144(+)$1	241	35	38	9.0000
cc[	chr11:811622-811842(+)$1	220	32	35	9.0000
lii	chr7:98479270-98479506(+)$1	236	42	45	9.0000
Eee	chrX:135961268-135961484(-)$1	216	13	16	9.0000
hhh	chr2:97534846-97535110(-)$1	264	39	42	9.0000
fff	chr16:89042874-89043148(-)$1	274	13	16	9.0000
A{B	chr5:651408-651749(+)$1	341	2	5	9.0000
PPP	chr11:75115364-75115613(+)$1	249	6	9	9.0000
"""	chr19:1415698-1415950(+)$1	252	47	50	9.0000
DDD	chrX:152956037-152956323(+)$1	286	63	66	9.0000
{EE	chr13:114564161-114564384(-)$1	223	11	14	9.0000
iii	chr21:44269068-44269304(-)$1	236	5	8	9.0000
!cc	chr11:811679-811891(+)$1	212	30	33	9.0000
{GG	chr16:88960027-88960302(-)$1	275	44	47	9.0000
nee	chr22:50021636-50021901(-)$1	265	28	31	9.0000
e]b	chr21:39429486-39429779(-)$1	293	225	228	9.0000
Fgg	chrX:135961289-135961521(-)$1	232	50	53	9.0000
:::	chr7:98479312-98479517(+)$1	205	0	3	9.0000
mmd	chr8:9628389-9628679(+)$1	290	30	33	9.0000
LLL	chr7:5569349-5569609(-)$1	260	30	33	9.0000
$hh	chr10:43902711-43902979(-)$1	268	111	114	9.0000
B{B	chr22:19710374-19710612(+)$1	238	77	80	9.0000
:ee	chr2:203157675-203157880(+)$1	205	11	14	9.0000
ggg	chr12:133272118-133272359(+)$1	241	46	49	9.0000
eee	chr1:12644031-12644309(-)$1	278	50	53	9.0000
b[b	chr2:10538775-10539081(+)$1	306	194	197	9.0000
"dd	chr19:47730944-47731185(-)$1	241	15	18	9.0000
]cc	chr16:88587438-88587746(+)$1	308	136	139	9.0000
:::	chr15:66794269-66794504(-)$1	235	43	46	9.0000
:::	chr11:75115413-75115630(+)$1	217	3	6	9.0000
KDD	chr19:34882607-34882896(+)$1	289	9	12	9.0000
b[c	chr12:123994571-123994831(-)$1	260	12	15	9.0000
:ee	chr19:893460-893690(+)$1	230	172	175	9.0000
eee	chr19:4035174-4035434(+)$1	260	50	53	9.0000
eee	chr17:73892406-73892773(-)$1	367	88	91	9.0000
nnn	chr22:49982497-49982760(-)$1	263	9	12	9.0000
hhh	chr16:89359398-89359679(-)$1	281	1	4	9.0000
eee	chrX:20154363-20154621(-)$1	258	48	51	9.0000
fff	chr4:83816929-83817139(-)$1	210	0	3	9.0000
e>>	chr11:17096147-17096384(-)$1	237	139	142	9.0000
:::	chr22:35738403-35738644(+)$1	241	2	5	9.0000
BLL	chrX:152956442-152956714(+)$1	272	30	33	9.0000
EEE	chr16:87771822-87772104(-)$1	282	23	26	9.0000
ddd	chr1:45242093-45242306(+)$1	213	9	12	9.0000
eee	chr15:69110817-69111067(-)$1	250	96	99	9.0000
c!!	chr19:1409876-1410155(+)$1	279	146	149	9.0000
"dd	chr9:136132795-136133015(-)$1	220	17	20	9.0000
ddd	chr19:50000887-50001155(+)$1	268	71	74	9.0000
:::	chr19:47732219-47732436(-)$1	217	2	5	9.0000
fff	chr4:83816906-83817129(-)$1	223	49	52	9.0000
eee	chr9:44990624-44990887(+)$1	263	40	43	9.0000
ood	chr22:50018397-50018654(-)$1	257	53	56	9.0000
b]=	chr12:6619565-6619811(+)$1	246	24	27	9.0000
ddd	chr1:109642828-109643031(+)$1	203	19	22	9.0000
eee	chr16:1425608-1425862(-)$1	254	16	19	9.0000
666	chr16:89367059-89367310(-)$1	251	32	35	9.0000
III	chr19:48259010-48259223(+)$1	213	77	80	9.0000
JJJ	chr21:44268279-44268591(-)$1	312	3	6	9.0000

#DB
((.	chr1:109642841-109643053(+)$1	1	6	9	9.0000
)))	chr22:50032194-50032445(-)$1	1	90	93	9.0000
((.	chr19:34879617-34879847(+)$1	1	18	21	9.0000
...	chrM:12069-12306(+)$1	1	0	3	9.0000
)))	chr15:66794315-66794531(-)$1	1	70	73	9.0000
...	chr11:47377093-47377383(-)$1	1	5	8	9.0000
(((	chr7:98479338-98479545(+)$1	1	26	29	9.0000
)).	chr22:49992249-49992521(-)$1	1	103	106	9.0000
(((	chr22:19977259-19977514(-)$1	1	2	5	9.0000
.))	chr19:3982407-3982666(-)$1	1	133	136	9.0000
(((	chr9:136132879-136133108(-)$1	1	110	113	9.0000
.((	chr6:31504067-31504301(-)$1	1	0	3	9.0000
(.(	chr1:228330434-228330684(+)$1	1	101	104	9.0000
(((	chr12:98993341-98993554(+)$1	1	23	26	9.0000
((.	chr12:124951181-124951531(-)$1	1	52	55	9.0000
...	chr5:154136566-154136830(+)$1	1	101	104	9.0000
((.	chr1:22155427-22155672(-)$1	1	29	32	9.0000
).)	chr12:123994631-123994887(-)$1	1	23	26	9.0000
(.(	chr22:20068779-20069080(+)$1	1	39	42	9.0000
)))	chr14:21860242-21860472(-)$1	1	64	67	9.0000
.((	chr12:112035314-112035563(-)$1	1	16	19	9.0000
(((	chr17:8076672-8076904(-)$1	1	23	26	9.0000
(((	chr21:46576566-46576833(+)$1	1	41	44	9.0000
...	chr15:89444583-89444832(-)$1	1	174	177	9.0000
.((	chr2:97550897-97551143(-)$1	1	9	12	9.0000
...	chr3:128213036-128213278(+)$1	1	5	8	9.0000
(..	chr5:649568-649811(+)$1	1	1	4	9.0000
)))	chr13:92000161-92000439(+)$1	1	89	92	9.0000
...	chr16:2204997-2205207(-)$1	1	8	11	9.0000
(.(	chr2:97532477-97532687(-)$1	1	5	8	9.0000
)))	chr16:88963045-88963309(-)$1	1	141	144	9.0000
...	chr7:98479351-98479560(+)$1	1	13	16	9.0000
...	chr22:20004105-20004395(-)$1	1	0	3	9.0000
)..	chr4:78740041-78740317(-)$1	1	17	20	9.0000
)))	chr22:49993579-49993824(-)$1	1	114	117	9.0000
(((	chr11:17097223-17097470(-)$1	1	3	6	9.0000
(..	chr22:50034466-50034748(-)$1	1	113	116	9.0000
((.	chr17:27047492-27047726(+)$1	1	17	20	9.0000
(((	chr9:139621154-139621374(-)$1	1	66	69	9.0000
((.	chr19:34879004-34879220(+)$1	1	10	13	9.0000
(..	chr3:128214508-128214768(+)$1	1	45	48	9.0000
(((	chr21:44268655-44268916(-)$1	1	21	24	9.0000
(..	chr19:1410903-1411144(+)$1	1	35	38	9.0000
((.	chr11:811622-811842(+)$1	1	32	35	9.0000
.))	chr7:98479270-98479506(+)$1	1	42	45	9.0000
(((	chrX:135961268-135961484(-)$1	1	13	16	9.0000
(((	chr2:97534846-97535110(-)$1	1	39	42	9.0000
(((	chr16:89042874-89043148(-)$1	1	13	16	9.0000
(.(	chr5:651408-651749(+)$1	1	2	5	9.0000
...	chr11:75115364-75115613(+)$1	1	6	9	9.0000
...	chr19:1415698-1415950(+)$1	1	47	50	9.0000
(((	chrX:152956037-152956323(+)$1	1	63	66	9.0000
.((	chr13:114564161-114564384(-)$1	1	11	14	9.0000
(((	chr21:44269068-44269304(-)$1	1	5	8	9.0000
.((	chr11:811679-811891(+)$1	1	30	33	9.0000
.((	chr16:88960027-88960302(-)$1	1	44	47	9.0000
.))	chr22:50021636-50021901(-)$1	1	28	31	9.0000
).)	chr21:39429486-39429779(-)$1	1	225	228	9.0000
(((	chrX:135961289-135961521(-)$1	1	50	53	9.0000
...	chr7:98479312-98479517(+)$1	1	0	3	9.0000
..)	chr8:9628389-9628679(+)$1	1	30	33	9.0000
...	chr7:5569349-5569609(-)$1	1	30	33	9.0000
.((	chr10:43902711-43902979(-)$1	1	111	114	9.0000
(.(	chr22:19710374-19710612(+)$1	1	77	80	9.0000
.((	chr2:203157675-203157880(+)$1	1	11	14	9.0000
(((	chr12:133272118-133272359(+)$1	1	46	49	9.0000
(((	chr1:12644031-12644309(-)$1	1	50	53	9.0000
(.(	chr2:10538775-10539081(+)$1	1	194	197	9.0000
.((	chr19:47730944-47731185(-)$1	1	15	18	9.0000
.))	chr16:88587438-88587746(+)$1	1	136	139	9.0000
...	chr15:66794269-66794504(-)$1	1	43	46	9.0000
...	chr11:75115413-75115630(+)$1	1	3	6	9.0000
.((	chr19:34882607-34882896(+)$1	1	9	12	9.0000
(.(	chr12:123994571-123994831(-)$1	1	12	15	9.0000
.((	chr19:893460-893690(+)$1	1	172	175	9.0000
(((	chr19:4035174-4035434(+)$1	1	50	53	9.0000
)))	chr17:73892406-73892773(-)$1	1	88	91	9.0000
...	chr22:49982497-49982760(-)$1	1	9	12	9.0000
(((	chr16:89359398-89359679(-)$1	1	1	4	9.0000
(((	chrX:20154363-20154621(-)$1	1	48	51	9.0000
(((	chr4:83816929-83817139(-)$1	1	0	3	9.0000
)..	chr11:17096147-17096384(-)$1	1	139	142	9.0000
...	chr22:35738403-35738644(+)$1	1	2	5	9.0000
(..	chrX:152956442-152956714(+)$1	1	30	33	9.0000
(((	chr16:87771822-87772104(-)$1	1	23	26	9.0000
(((	chr1:45242093-45242306(+)$1	1	9	12	9.0000
(((	chr15:69110817-69111067(-)$1	1	96	99	9.0000
(..	chr19:1409876-1410155(+)$1	1	146	149	9.0000
.((	chr9:136132795-136133015(-)$1	1	17	20	9.0000
(((	chr19:50000887-50001155(+)$1	1	71	74	9.0000
...	chr19:47732219-47732436(-)$1	1	2	5	9.0000
(((	chr4:83816906-83817129(-)$1	1	49	52	9.0000
(((	chr9:44990624-44990887(+)$1	1	40	43	9.0000
..)	chr22:50018397-50018654(-)$1	1	53	56	9.0000
).)	chr12:6619565-6619811(+)$1	1	24	27	9.0000
)))	chr1:109642828-109643031(+)$1	1	19	22	9.0000
(((	chr16:1425608-1425862(-)$1	1	16	19	9.0000
...	chr16:89367059-89367310(-)$1	1	32	35	9.0000
(((	chr19:48259010-48259223(+)$1	1	77	80	9.0000
(((	chr21:44268279-44268591(-)$1	1	3	6	9.0000

#PSSM
U : 0.86	u : 0.13	
G : 0.86	g : 0.13	
U : 0.86	u : 0.13	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_transcript_m3_run1.nuc.txt

#NT
AUAAUAAAAAA	chr1:32508413-32508627(+)$1	214	100	111	20.8070
aaaggaaaaaa	chr18:60997902-60998179(-)$1	277	134	145	20.0175
aaaaagaaaaa	chr20:45838945-45839220(-)$1	275	124	135	20.1929
AAAAUAAAAUA	chr2:68405914-68406198(-)$1	284	188	199	20.3684
CAAAUAAAGAA	chr6:33377426-33377716(+)$1	290	189	200	16.5087
AAGACAAAAAA	chr1:182352694-182352978(-)$1	284	112	123	18.6140
aaaauaaauaa	chr8:101715240-101715492(-)$1	252	5	16	20.7192
AGAAGAAAAAA	chr19:18390666-18390885(-)$1	219	139	150	19.6666
aaaauccaaaa	chr8:101734116-101734344(-)$1	228	102	113	17.7368
aaaugaaaaaa	chr7:21554052-21554310(+)$1	258	107	118	19.9298
AAAAUAGUAAA	chr17:56080815-56081113(-)$1	298	136	147	16.7719
AAAAAAAAAAA	chr21:44512990-44513221(-)$1	231	100	111	23.7894
AUAAUAAAAAA	chr1:32508427-32508681(+)$1	254	86	97	20.8070
AAAACAAAAAA	chr19:45406784-45407035(+)$1	251	120	131	23.1754
AAAGUUAAAAA	chr11:58385122-58385368(+)$1	246	103	114	17.4736
aaaauauaaaa	chr8:101715364-101715617(-)$1	253	123	134	21.4210
AAAACAAAACA	chr6:43753926-43754176(+)$1	250	30	41	18.6140
AAAGUUAAAAA	chr5:179046402-179046681(-)$1	279	169	180	17.4736
AAAAAAAAAAA	chr22:22114551-22114907(-)$1	356	235	246	23.7894
aaaagaaaaaa	chr19:10578460-10578707(+)$1	247	120	131	23.9649
aaaagaaaaaa	chr1:205687228-205687520(-)$1	292	151	162	23.9649
auauuaaaaaa	chr1:29474185-29474471(-)$1	286	102	113	16.7719
aaaaaaaaaaa	chr17:47676744-47677007(-)$1	263	128	139	23.7894
AAAAUACAGAA	chr6:31698288-31698539(-)$1	251	147	158	17.1228
AAAAUGAAAAA	chr7:100278803-100279081(-)$1	278	116	127	21.4210
AAAAUGUAAAA	chr7:155101668-155101913(+)$1	245	141	152	17.8245
CAAAUAAAGAA	chr6:33377541-33377786(+)$1	245	74	85	16.5087
AAAACAAAACA	chr6:43753844-43754101(+)$1	257	112	123	18.6140
AAAAAAAAAAA	chr21:44513021-44513263(-)$1	242	142	153	23.7894
AAAAGAAAAAA	chr10:35859026-35859317(+)$1	291	128	139	23.9649
AAGCUAAAAAA	chr3:180702226-180702520(-)$1	294	79	90	16.2456
AAAACUAAAAA	chr10:121340694-121340957(-)$1	263	209	220	19.5789
aaaagaaaaaa	chr19:1258684-1258928(+)$1	244	113	124	23.9649
aauuuaaaaaa	chr17:56050985-56051202(-)$1	217	95	106	16.3333
aaaauccaaaa	chr8:101734155-101734404(-)$1	249	162	173	17.7368
aaaauagauaa	chr7:119356053-119356288(-)$1	235	123	134	16.8596
aaaaaaaaaaa	chr4:48499963-48500225(-)$1	262	122	133	23.7894
AAAAGAAAAAA	chr9:135973042-135973335(-)$1	293	120	131	23.9649
GAAAAAAAAAA	chr14:56150920-56151169(+)$1	249	59	70	19.5789
aaaauaaaaaa	chr11:47491731-47491997(-)$1	266	123	134	25.0175
AAAAGAAAAAA	chr17:47128505-47128752(+)$1	247	107	118	23.9649
AAAAAAAGAAA	chr17:46698476-46698707(-)$1	231	144	155	19.4912
AAAAAAAAAAA	chr3:50296203-50296465(+)$1	262	127	138	23.7894
aaaauauaaaa	chr8:101715439-101715686(-)$1	247	192	203	21.4210
AAAAGCAAAAA	chr5:151184283-151184535(+)$1	252	114	125	20.3684
GAAAAAAAAAA	chr5:140895330-140895584(-)$1	254	88	99	19.5789
AAAAGGAAAAA	chr3:51435663-51435934(-)$1	271	108	119	20.3684
AAAGUAAUAAA	chr11:85989505-85989841(+)$1	336	317	328	16.6842
ACAAGAAAAAA	chr7:120936967-120937217(+)$1	250	15	26	19.5789
AAAAGAAACAA	chr16:56462981-56463229(-)$1	248	72	83	19.5789
aaaaaaaaaaa	chr19:39220609-39220885(+)$1	276	121	132	23.7894
GAAAUAUAAAA	chr5:179046547-179046837(-)$1	290	52	63	17.2105
aaaauuuaaaa	chr5:96365744-96365999(+)$1	255	101	112	17.8245
AAAAAAAGAAA	chr17:46698427-46698676(-)$1	249	113	124	19.4912
UAAAUAAGAAA	chr7:148522977-148523219(-)$1	242	18	29	16.3333
aaaauccaaaa	chr8:101734057-101734282(-)$1	225	40	51	17.7368

#otherMatches

#Struct PSSM
!bb[cccpppp	chr19:18390586-18390863(-)$1	277	117	128	19.6666
fff]dddd22g	chr1:32508413-32508627(+)$1	214	100	111	20.8070
:::ggggggg!	chr18:60997902-60998179(-)$1	277	134	145	20.0175
bb]ccc22ddd	chr20:45838945-45839220(-)$1	275	124	135	20.1929
gggg]dddd55	chr2:68405914-68406198(-)$1	284	188	199	20.3684
gggggqqqqqq	chr6:33377426-33377716(+)$1	290	189	200	16.5087
iiiibb[hhhh	chr1:182352694-182352978(-)$1	284	112	123	18.6140
:::::::FFFF	chr8:101715240-101715492(-)$1	252	5	16	20.7192
a]ggggggg44	chr19:18390666-18390885(-)$1	219	139	150	19.6666
:::::::::::	chr8:101734116-101734344(-)$1	228	102	113	17.7368
iiii:::::::	chr7:21554052-21554310(+)$1	258	107	118	19.9298
ooooohhhhhh	chr17:56080815-56081113(-)$1	298	136	147	16.7719
+++++++++++	chr21:44512990-44513221(-)$1	231	100	111	23.7894
fff]dddd22g	chr1:32508427-32508681(+)$1	254	86	97	20.8070
dd:::::::::	chr19:45406784-45407035(+)$1	251	120	131	23.1754
ffffff:::::	chr11:58385122-58385368(+)$1	246	103	114	17.4736
b]eeeee::::	chr8:101715364-101715617(-)$1	253	123	134	21.4210
:::::::::::	chr6:43753926-43754176(+)$1	250	30	41	18.6140
EE:::::::::	chr5:179046402-179046681(-)$1	279	169	180	17.4736
euuuuuuuuuu	chr22:22114551-22114907(-)$1	356	235	246	23.7894
hhhh]dddd::	chr19:10578460-10578707(+)$1	247	120	131	23.9649
:::::::::::	chr1:205687228-205687520(-)$1	292	151	162	23.9649
ddd::::::::	chr1:29474185-29474471(-)$1	286	102	113	16.7719
^^^^^^^^^^^	chr17:47676744-47677007(-)$1	263	128	139	23.7894
>>>>>>bb]==	chr6:31698288-31698539(-)$1	251	147	158	17.1228
eeee22eeeee	chr7:100278803-100279081(-)$1	278	116	127	21.4210
GGGG:::::::	chr7:155101668-155101913(+)$1	245	141	152	17.8245
gggggqqqqqq	chr6:33377541-33377786(+)$1	245	74	85	16.5087
gggggg:::::	chr6:43753844-43754101(+)$1	257	112	123	18.6140
thhhhhhhh::	chr21:44513021-44513263(-)$1	242	142	153	23.7894
:::::::::::	chr10:35859026-35859317(+)$1	291	128	139	23.9649
]dddd::::::	chr3:180702226-180702520(-)$1	294	79	90	16.2456
JJ////////G	chr10:121340694-121340957(-)$1	263	209	220	19.5789
GGG::::::::	chr19:1258684-1258928(+)$1	244	113	124	23.9649
tthhhhhhhh4	chr17:56050985-56051202(-)$1	217	95	106	16.3333
:::::::::::	chr8:101734155-101734404(-)$1	249	162	173	17.7368
mmmdddd::::	chr7:119356053-119356288(-)$1	235	123	134	16.8596
c::::::::::	chr4:48499963-48500225(-)$1	262	122	133	23.7894
ggxxxxxxxxx	chr9:135973042-135973335(-)$1	293	120	131	23.9649
EEE::::::::	chr14:56150920-56151169(+)$1	249	59	70	19.5789
^^^^^^^^^^^	chr11:47491731-47491997(-)$1	266	123	134	25.0175
gggggg]dddd	chr17:47128505-47128752(+)$1	247	107	118	23.9649
zzzzzzzzzzz	chr17:46698476-46698707(-)$1	231	144	155	19.4912
DD:::::::::	chr3:50296203-50296465(+)$1	262	127	138	23.7894
b]eeeee::::	chr8:101715439-101715686(-)$1	247	192	203	21.4210
eeeeeeehhhh	chr5:151184283-151184535(+)$1	252	114	125	20.3684
hhhhhhhmmmm	chr5:140895330-140895584(-)$1	254	88	99	19.5789
mmccc::::::	chr3:51435663-51435934(-)$1	271	108	119	20.3684
JJJJJJ\\\\\	chr11:85989505-85989841(+)$1	336	317	328	16.6842
:ccc!!ddddq	chr7:120936967-120937217(+)$1	250	15	26	19.5789
c22dddd22gg	chr16:56462981-56463229(-)$1	248	72	83	19.5789
uuuuuuuuuuu	chr19:39220609-39220885(+)$1	276	121	132	23.7894
===!!ccc+++	chr5:179046547-179046837(-)$1	290	52	63	17.2105
hhhhh]ccc::	chr5:96365744-96365999(+)$1	255	101	112	17.8245
zzzzzzzzzzz	chr17:46698427-46698676(-)$1	249	113	124	19.4912
::::FFFFFFM	chr7:148522977-148523219(-)$1	242	18	29	16.3333
:::::::::::	chr8:101734057-101734282(-)$1	225	40	51	17.7368

#DB
.((.(((....	chr19:18390586-18390863(-)$1	1	117	128	19.6666
))).))))..)	chr1:32508413-32508627(+)$1	1	100	111	20.8070
...(((((((.	chr18:60997902-60998179(-)$1	1	134	145	20.0175
)).)))..)))	chr20:45838945-45839220(-)$1	1	124	135	20.1929
)))).))))..	chr2:68405914-68406198(-)$1	1	188	199	20.3684
(((((......	chr6:33377426-33377716(+)$1	1	189	200	16.5087
))))((.((((	chr1:182352694-182352978(-)$1	1	112	123	18.6140
.......((((	chr8:101715240-101715492(-)$1	1	5	16	20.7192
).)))))))..	chr19:18390666-18390885(-)$1	1	139	150	19.6666
...........	chr8:101734116-101734344(-)$1	1	102	113	17.7368
)))).......	chr7:21554052-21554310(+)$1	1	107	118	19.9298
.....))))))	chr17:56080815-56081113(-)$1	1	136	147	16.7719
...........	chr21:44512990-44513221(-)$1	1	100	111	23.7894
))).))))..)	chr1:32508427-32508681(+)$1	1	86	97	20.8070
)).........	chr19:45406784-45407035(+)$1	1	120	131	23.1754
)))))).....	chr11:58385122-58385368(+)$1	1	103	114	17.4736
).)))))....	chr8:101715364-101715617(-)$1	1	123	134	21.4210
...........	chr6:43753926-43754176(+)$1	1	30	41	18.6140
((.........	chr5:179046402-179046681(-)$1	1	169	180	17.4736
(..........	chr22:22114551-22114907(-)$1	1	235	246	23.7894
)))).))))..	chr19:10578460-10578707(+)$1	1	120	131	23.9649
...........	chr1:205687228-205687520(-)$1	1	151	162	23.9649
)))........	chr1:29474185-29474471(-)$1	1	102	113	16.7719
...........	chr17:47676744-47677007(-)$1	1	128	139	23.7894
......)).))	chr6:31698288-31698539(-)$1	1	147	158	17.1228
))))..)))))	chr7:100278803-100279081(-)$1	1	116	127	21.4210
)))).......	chr7:155101668-155101913(+)$1	1	141	152	17.8245
(((((......	chr6:33377541-33377786(+)$1	1	74	85	16.5087
)))))).....	chr6:43753844-43754101(+)$1	1	112	123	18.6140
.))))))))..	chr21:44513021-44513263(-)$1	1	142	153	23.7894
...........	chr10:35859026-35859317(+)$1	1	128	139	23.9649
.))))......	chr3:180702226-180702520(-)$1	1	79	90	16.2456
))........)	chr10:121340694-121340957(-)$1	1	209	220	19.5789
)))........	chr19:1258684-1258928(+)$1	1	113	124	23.9649
..)))))))).	chr17:56050985-56051202(-)$1	1	95	106	16.3333
...........	chr8:101734155-101734404(-)$1	1	162	173	17.7368
...))))....	chr7:119356053-119356288(-)$1	1	123	134	16.8596
)..........	chr4:48499963-48500225(-)$1	1	122	133	23.7894
((.........	chr9:135973042-135973335(-)$1	1	120	131	23.9649
(((........	chr14:56150920-56151169(+)$1	1	59	70	19.5789
...........	chr11:47491731-47491997(-)$1	1	123	134	25.0175
)))))).))))	chr17:47128505-47128752(+)$1	1	107	118	23.9649
...........	chr17:46698476-46698707(-)$1	1	144	155	19.4912
((.........	chr3:50296203-50296465(+)$1	1	127	138	23.7894
).)))))....	chr8:101715439-101715686(-)$1	1	192	203	21.4210
)))))))))))	chr5:151184283-151184535(+)$1	1	114	125	20.3684
(((((((....	chr5:140895330-140895584(-)$1	1	88	99	19.5789
..)))......	chr3:51435663-51435934(-)$1	1	108	119	20.3684
)))))).....	chr11:85989505-85989841(+)$1	1	317	328	16.6842
.(((..((((.	chr7:120936967-120937217(+)$1	1	15	26	19.5789
)..))))..))	chr16:56462981-56463229(-)$1	1	72	83	19.5789
...........	chr19:39220609-39220885(+)$1	1	121	132	23.7894
(((..(((...	chr5:179046547-179046837(-)$1	1	52	63	17.2105
))))).)))..	chr5:96365744-96365999(+)$1	1	101	112	17.8245
...........	chr17:46698427-46698676(-)$1	1	113	124	19.4912
....((((((.	chr7:148522977-148523219(-)$1	1	18	29	16.3333
...........	chr8:101734057-101734282(-)$1	1	40	51	17.7368

#PSSM
A : 0.54	a : 0.35	G : 0.05	C : 0.03	U : 0.01	
A : 0.56	a : 0.33	G : 0.03	U : 0.03	u : 0.01	C : 0.01	
A : 0.61	a : 0.33	G : 0.03	u : 0.01	
A : 0.57	a : 0.28	u : 0.05	G : 0.05	g : 0.01	C : 0.01	
U : 0.26	u : 0.19	G : 0.15	A : 0.14	g : 0.08	C : 0.08	a : 0.07	
A : 0.52	a : 0.26	c : 0.05	U : 0.05	G : 0.05	g : 0.01	C : 0.01	u : 0.01	
A : 0.57	a : 0.22	c : 0.05	u : 0.05	U : 0.03	G : 0.01	C : 0.01	g : 0.01	
A : 0.56	a : 0.35	G : 0.05	U : 0.03	
A : 0.57	a : 0.31	G : 0.05	u : 0.03	C : 0.01	
A : 0.59	a : 0.35	C : 0.03	U : 0.01	
A : 0.64	a : 0.35	

#score	1145.5614035087729
#seq	57
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_transcript_m1_run1.nuc.txt

#NT
GGGUGGGA	chr16:87377031-87377302(-)$1	271	211	219	15.8750
GGGUGGGG	chr17:80050938-80051192(-)$1	254	243	251	20.0156
UGGUGGGG	chr11:67810675-67810936(+)$1	261	104	112	15.4843
GGGUGGCG	chr7:150777605-150777858(-)$1	253	91	99	15.8750
GGGCGGGG	chr14:39644550-39644816(+)$1	266	113	121	15.7968
GAGUGGGG	chr8:121824467-121824737(-)$1	270	92	100	16.1093
GGGUGGGC	chr19:45571284-45571545(+)$1	261	114	122	15.7187
GGGUGAGG	chr5:134261501-134261753(+)$1	252	14	22	15.5625
GGGUGGAG	chr8:134256408-134256674(-)$1	266	124	132	15.7968
GGGUAGGG	chr5:93903966-93904220(-)$1	254	37	45	15.2500
UGGUGGGG	chr3:52325027-52325246(+)$1	219	128	136	15.4843
GAGUGGGG	chr12:46766145-46766378(-)$1	233	136	144	16.1093
CGGUGGGG	chr3:38388367-38388611(+)$1	244	94	102	15.4062
GGGCGGGG	chr7:5569719-5569971(-)$1	252	55	63	15.7968
GCGUGGGG	chr9:139685915-139686186(+)$1	271	30	38	16.0312
GGGUGGGG	chr17:39845697-39845972(+)$1	275	61	69	20.0156
GCGUGGGG	chr2:219266345-219266576(+)$1	231	92	100	16.0312
GGGUGGGA	chr3:52829549-52829785(+)$1	236	108	116	15.8750
GGAUGGGG	chr7:100282732-100283073(-)$1	341	63	71	15.7968
GGGUGCGG	chr16:2578652-2578898(+)$1	246	82	90	15.4843
GGGUGGUG	chr1:44442124-44442392(+)$1	268	220	228	16.1875
GGGUGGGG	chr20:61452781-61453044(+)$1	263	186	194	20.0156
GGGUGGUG	chrM:14301-14514(-)$1	213	171	179	16.1875
GGGUGGGA	chr6:64282627-64282938(+)$1	311	126	134	15.8750
GGGUGGUG	chr5:134260114-134260402(+)$1	288	29	37	16.1875
gggugggg	chr19:1978465-1978720(+)$1	255	61	69	20.0156
GGGUGGGG	chr20:2819679-2819907(-)$1	228	160	168	20.0156
gggaggGG	chr16:88729197-88729507(-)$1	310	222	230	15.6406
GGCUGGGG	chr12:6643937-6644155(+)$1	218	104	112	16.1093
GGGUGGGG	chr13:50571174-50571467(+)$1	293	160	168	20.0156
AGGUGGGG	chr1:43212718-43212989(-)$1	271	246	254	15.4062
gggcgggg	chr17:74732712-74732968(-)$1	256	119	127	15.7968
GAGUGGGG	chr17:4685868-4686119(+)$1	251	37	45	16.1093
GAGUGGGG	chr22:50354825-50355088(+)$1	263	176	184	16.1093
GGGUGGGG	chr20:2819566-2819827(-)$1	261	80	88	20.0156
GGGUGGGC	chr20:60894109-60894349(-)$1	240	4	12	15.7187
GGGUGGUG	chr16:88718714-88718961(-)$1	247	125	133	16.1875
GGGUGGGG	chr20:62372754-62373015(+)$1	261	109	117	20.0156
GGGUCGGG	chr6:37139192-37139410(+)$1	218	29	37	15.2500
GGCUGGGG	chr17:77078044-77078299(+)$1	255	13	21	16.1093
GGGUGUGG	chr1:24119150-24119403(+)$1	253	162	170	15.5625
GGCUGGGG	chr16:67984010-67984326(-)$1	316	156	164	16.1093
GUGUGGGG	chr16:46918303-46918551(+)$1	248	235	243	16.0312
gggugggg	chr9:116138863-116139110(-)$1	247	226	234	20.0156
GGGUGGGG	chr5:134263334-134263544(+)$1	210	4	12	20.0156
GUGUGGGG	chr14:24568831-24569086(+)$1	255	56	64	16.0312
GGCUGGGG	chrX:152957771-152958013(+)$1	242	152	160	16.1093
GGAUGGGG	chr7:150774541-150774786(-)$1	245	81	89	15.7968
GGCUGGGG	chr19:1012061-1012406(-)$1	345	81	89	16.1093
GGGUGGGA	chr16:50664604-50664846(+)$1	242	77	85	15.8750
GGGUGGUG	chr11:821960-822188(+)$1	228	58	66	16.1875
GGGUGGGG	chr19:1429565-1429822(+)$1	257	220	228	20.0156
GGGUGGUG	chrM:14282-14501(-)$1	219	158	166	16.1875
GGGUGGCG	chr17:79868892-79869126(-)$1	234	80	88	15.8750
GCGUGGGG	chr14:54418396-54418665(-)$1	269	116	124	16.0312
GGGUGUGG	chr3:48456818-48457050(-)$1	232	71	79	15.5625
GGCUGGGG	chr9:134358243-134358532(+)$1	289	111	119	16.1093
GGGUGGGU	chr8:22885003-22885257(-)$1	254	91	99	15.6406
GGGAGGGG	chr3:48451382-48451604(-)$1	222	85	93	15.6406
GGGUGGGG	chr17:80016426-80016720(-)$1	294	264	272	20.0156
GGGUGAGG	chr16:67983707-67984038(-)$1	331	133	141	15.5625
GUGUGGGg	chr20:56140101-56140341(+)$1	240	179	187	16.0312
GGGUGGGG	chr20:60856116-60856361(+)$1	245	144	152	20.0156

#otherMatches

#Struct PSSM
ggg[a[gg	chr17:60556496-60556861(+)$1	365	16	24	15.7968
hhhhDDDD	chr16:87377031-87377302(-)$1	271	211	219	15.8750
iiiiiii]	chr17:80050938-80051192(-)$1	254	243	251	20.0156
H{FFFFFF	chr11:67810675-67810936(+)$1	261	104	112	15.4843
C{EEEEE:	chr7:150777605-150777858(-)$1	253	91	99	15.8750
hhhhA{FF	chr14:39644550-39644816(+)$1	266	113	121	15.7968
lleeeee]	chr8:121824467-121824737(-)$1	270	92	100	16.1093
!!a[gggg	chr19:45571284-45571545(+)$1	261	114	122	15.7187
uuuuufff	chr5:134261501-134261753(+)$1	252	14	22	15.5625
fff:dddd	chr8:134256408-134256674(-)$1	266	124	132	15.7968
gg[ccc!!	chr5:93903966-93904220(-)$1	254	37	45	15.2500
fffbbfff	chr3:52325027-52325246(+)$1	219	128	136	15.4843
::::eeee	chr12:46766145-46766378(-)$1	233	136	144	16.1093
mmgggggg	chr3:38388367-38388611(+)$1	244	94	102	15.4062
=====22a	chr7:5569719-5569971(-)$1	252	55	63	15.7968
EEEEEBB{	chr9:139685915-139686186(+)$1	271	30	38	16.0312
ndddd]cc	chr17:39845697-39845972(+)$1	275	61	69	20.0156
[a[ggggg	chr2:219266345-219266576(+)$1	231	92	100	16.0312
!bb[ffff	chr3:52829549-52829785(+)$1	236	108	116	15.8750
========	chr7:100282732-100283073(-)$1	341	63	71	15.7968
la]ccc88	chr16:2578652-2578898(+)$1	246	82	90	15.4843
:HHHHHHH	chr1:44442124-44442392(+)$1	268	220	228	16.1875
eee[hhhh	chr20:61452781-61453044(+)$1	263	186	194	20.0156
:CCC}BB}	chrM:14301-14514(-)$1	213	171	179	16.1875
fff]a]bb	chr6:64282627-64282938(+)$1	311	126	134	15.8750
annnnna]	chr5:134260114-134260402(+)$1	288	29	37	16.1875
FFFFFFee	chr19:1978465-1978720(+)$1	255	61	69	20.0156
ooocccCC	chr20:2819679-2819907(-)$1	228	160	168	20.0156
ggggggg2	chr16:88729197-88729507(-)$1	310	222	230	15.6406
ff####a[	chr12:6643937-6644155(+)$1	218	104	112	16.1093
3hhhhhhh	chr13:50571174-50571467(+)$1	293	160	168	20.0156
fff]eeee	chr1:43212718-43212989(-)$1	271	246	254	15.4062
D{A:dddd	chr17:74732712-74732968(-)$1	256	119	127	15.7968
HHHHHddd	chr17:4685868-4686119(+)$1	251	37	45	16.1093
oooooobb	chr22:50354825-50355088(+)$1	263	176	184	16.1093
JJJJJJJJ	chr20:2819566-2819827(-)$1	261	80	88	20.0156
ffffff[b	chr20:60894109-60894349(-)$1	240	4	12	15.7187
hhhhhhh[	chr16:88718714-88718961(-)$1	247	125	133	16.1875
gggggg##	chr20:62372754-62373015(+)$1	261	109	117	20.0156
lffffffd	chr6:37139192-37139410(+)$1	218	29	37	15.2500
FFF{CCCe	chr17:77078044-77078299(+)$1	255	13	21	16.1093
GGGGGYYC	chr1:24119150-24119403(+)$1	253	162	170	15.5625
ii22ffff	chr16:67984010-67984326(-)$1	316	156	164	16.1093
E}BB}BB:	chr16:46918303-46918551(+)$1	248	235	243	16.0312
CC}HHHHH	chr9:116138863-116139110(-)$1	247	226	234	20.0156
e[bb[a$$	chr5:134263334-134263544(+)$1	210	4	12	20.0156
NNNNNDDD	chr14:24568831-24569086(+)$1	255	56	64	16.0312
oooa]ggg	chrX:152957771-152958013(+)$1	242	152	160	16.1093
bbddddbb	chr7:150774541-150774786(-)$1	245	81	89	15.7968
eeee"""g	chr19:1012061-1012406(-)$1	345	81	89	16.1093
hhhh22dd	chr16:50664604-50664846(+)$1	242	77	85	15.8750
fff]gggg	chr11:821960-822188(+)$1	228	58	66	16.1875
FFFFF}BB	chr19:1429565-1429822(+)$1	257	220	228	20.0156
:CCC}BB}	chrM:14282-14501(-)$1	219	158	166	16.1875
ddiiiiii	chr17:79868892-79869126(-)$1	234	80	88	15.8750
pppiiiii	chr14:54418396-54418665(-)$1	269	116	124	16.0312
eeeeebb:	chr3:48456818-48457050(-)$1	232	71	79	15.5625
hhhDDDDC	chr9:134358243-134358532(+)$1	289	111	119	16.1093
[bb[dddd	chr8:22885003-22885257(-)$1	254	91	99	15.6406
i]gggggg	chr3:48451382-48451604(-)$1	222	85	93	15.6406
========	chr17:80016426-80016720(-)$1	294	264	272	20.0156
gggg22cc	chr16:67983707-67984038(-)$1	331	133	141	15.5625
vvvvvggg	chr20:56140101-56140341(+)$1	240	179	187	16.0312
:IIIIIII	chr20:60856116-60856361(+)$1	245	144	152	20.0156

#DB
(((.(.((	chr17:60556496-60556861(+)$1	1	16	24	15.7968
))))))))	chr16:87377031-87377302(-)$1	1	211	219	15.8750
))))))).	chr17:80050938-80051192(-)$1	1	243	251	20.0156
(.((((((	chr11:67810675-67810936(+)$1	1	104	112	15.4843
(.(((((.	chr7:150777605-150777858(-)$1	1	91	99	15.8750
))))(.((	chr14:39644550-39644816(+)$1	1	113	121	15.7968
..))))).	chr8:121824467-121824737(-)$1	1	92	100	16.1093
..(.((((	chr19:45571284-45571545(+)$1	1	114	122	15.7187
.....)))	chr5:134261501-134261753(+)$1	1	14	22	15.5625
))).((((	chr8:134256408-134256674(-)$1	1	124	132	15.7968
((.(((..	chr5:93903966-93904220(-)$1	1	37	45	15.2500
)))))(((	chr3:52325027-52325246(+)$1	1	128	136	15.4843
....((((	chr12:46766145-46766378(-)$1	1	136	144	16.1093
..))))))	chr3:38388367-38388611(+)$1	1	94	102	15.4062
)))))..)	chr7:5569719-5569971(-)$1	1	55	63	15.7968
(((((((.	chr9:139685915-139686186(+)$1	1	30	38	16.0312
.)))).))	chr17:39845697-39845972(+)$1	1	61	69	20.0156
.(.(((((	chr2:219266345-219266576(+)$1	1	92	100	16.0312
.((.((((	chr3:52829549-52829785(+)$1	1	108	116	15.8750
))))))))	chr7:100282732-100283073(-)$1	1	63	71	15.7968
.).)))..	chr16:2578652-2578898(+)$1	1	82	90	15.4843
.)))))))	chr1:44442124-44442392(+)$1	1	220	228	16.1875
(((.((((	chr20:61452781-61453044(+)$1	1	186	194	20.0156
.))).)).	chrM:14301-14514(-)$1	1	171	179	16.1875
))).).))	chr6:64282627-64282938(+)$1	1	126	134	15.8750
(.....).	chr5:134260114-134260402(+)$1	1	29	37	16.1875
((((((((	chr19:1978465-1978720(+)$1	1	61	69	20.0156
...)))))	chr20:2819679-2819907(-)$1	1	160	168	20.0156
))))))).	chr16:88729197-88729507(-)$1	1	222	230	15.6406
((....(.	chr12:6643937-6644155(+)$1	1	104	112	16.1093
.)))))))	chr13:50571174-50571467(+)$1	1	160	168	20.0156
))).))))	chr1:43212718-43212989(-)$1	1	246	254	15.4062
(.(.((((	chr17:74732712-74732968(-)$1	1	119	127	15.7968
((((((((	chr17:4685868-4686119(+)$1	1	37	45	16.1093
......))	chr22:50354825-50355088(+)$1	1	176	184	16.1093
((((((((	chr20:2819566-2819827(-)$1	1	80	88	20.0156
((((((.(	chr20:60894109-60894349(-)$1	1	4	12	15.7187
(((((((.	chr16:88718714-88718961(-)$1	1	125	133	16.1875
((((((..	chr20:62372754-62373015(+)$1	1	109	117	20.0156
.)))))))	chr6:37139192-37139410(+)$1	1	29	37	15.2500
(((.((((	chr17:77078044-77078299(+)$1	1	13	21	16.1093
)))))..)	chr1:24119150-24119403(+)$1	1	162	170	15.5625
))..))))	chr16:67984010-67984326(-)$1	1	156	164	16.1093
).)).)).	chr16:46918303-46918551(+)$1	1	235	243	16.0312
)).)))))	chr9:116138863-116139110(-)$1	1	226	234	20.0156
(.((.(..	chr5:134263334-134263544(+)$1	1	4	12	20.0156
.....(((	chr14:24568831-24569086(+)$1	1	56	64	16.0312
...).)))	chrX:152957771-152958013(+)$1	1	152	160	16.1093
))))))))	chr7:150774541-150774786(-)$1	1	81	89	15.7968
((((...(	chr19:1012061-1012406(-)$1	1	81	89	16.1093
))))..))	chr16:50664604-50664846(+)$1	1	77	85	15.8750
))).))))	chr11:821960-822188(+)$1	1	58	66	16.1875
))))).))	chr19:1429565-1429822(+)$1	1	220	228	20.0156
.))).)).	chrM:14282-14501(-)$1	1	158	166	16.1875
))))))))	chr17:79868892-79869126(-)$1	1	80	88	15.8750
...)))))	chr14:54418396-54418665(-)$1	1	116	124	16.0312
))))))).	chr3:48456818-48457050(-)$1	1	71	79	15.5625
))))))))	chr9:134358243-134358532(+)$1	1	111	119	16.1093
.((.((((	chr8:22885003-22885257(-)$1	1	91	99	15.6406
).))))))	chr3:48451382-48451604(-)$1	1	85	93	15.6406
))))))))	chr17:80016426-80016720(-)$1	1	264	272	20.0156
))))..))	chr16:67983707-67984038(-)$1	1	133	141	15.5625
.....)))	chr20:56140101-56140341(+)$1	1	179	187	16.0312
.(((((((	chr20:60856116-60856361(+)$1	1	144	152	20.0156

#PSSM
G : 0.85	g : 0.07	U : 0.03	C : 0.01	A : 0.01	
G : 0.76	g : 0.07	A : 0.06	C : 0.04	U : 0.04	
G : 0.79	C : 0.09	g : 0.07	A : 0.03	
U : 0.87	c : 0.03	C : 0.03	u : 0.03	a : 0.01	A : 0.01	
G : 0.89	g : 0.07	A : 0.01	C : 0.01	
G : 0.84	g : 0.07	A : 0.03	U : 0.03	C : 0.01	
G : 0.79	U : 0.09	g : 0.06	C : 0.03	A : 0.01	
G : 0.81	g : 0.07	A : 0.06	C : 0.03	U : 0.01	

#score	1068.8125
#seq	64
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF304YLR_TBRG4_CDS_m3_run2.nuc.txt

#NT
CUUAUCCUACC	chrM:6535-6761(+)$1	226	104	115	18.5102
CUCACCCUAAC	chrM:13608-13840(+)$1	232	13	24	17.2857
CUUAUCCUACC	chrM:6564-6772(+)$1	208	75	86	18.5102
CUAAUACUAAC	chrM:10795-11002(+)$1	207	160	171	16.9795
AUCAUCCUAGU	chrM:7783-7989(+)$1	206	13	24	17.8979
CUAAUACUAAC	chrM:10803-11027(+)$1	224	152	163	16.9795
CUAAUACUAAC	chrM:10756-10982(+)$1	226	199	210	16.9795
CUCACCAUAGU	chrM:9484-9706(+)$1	222	162	173	14.1224
CUAAUACUAAC	chrM:10782-10990(+)$1	208	173	184	16.9795
CUCAUCCUAGC	chrM:15458-15708(+)$1	250	183	194	22.2857
CUCACCAUAGU	chrM:9506-9728(+)$1	222	140	151	14.1224
CUAAUACUAAC	chrM:10791-10995(+)$1	204	164	175	16.9795
CUUAUACUAGU	chrM:8594-8814(+)$1	220	140	151	17.1836
AUCAUCCUAGU	chrM:7744-7957(+)$1	213	52	63	17.8979
CUAAUCUUAGU	chrM:12533-12742(+)$1	209	188	199	15.8571
CUAAUACUAAC	chrM:10827-11055(+)$1	228	128	139	16.9795
CUCAUUCUAAC	chrM:15708-15927(+)$1	219	35	46	17.3877
CUCAUCCAAAC	chrM:11471-11721(+)$1	250	192	203	16.2653
CUAAUCUUAGU	chrM:12567-12821(+)$1	254	154	165	15.8571
CUUAUACUAGU	chrM:8544-8784(+)$1	240	190	201	17.1836
CUUAUCCUACC	chrM:6439-6675(+)$1	236	200	211	18.5102
AUCAUCCUAGC	chrM:10146-10373(+)$1	227	198	209	19.1224
CUCACCAUAGU	chrM:9528-9752(+)$1	224	118	129	14.1224
CUCAUCCUAAC	chrM:13947-14170(+)$1	223	172	183	20.8571
CUUAUACUAGU	chrM:8584-8794(+)$1	210	150	161	17.1836
CUUAUACUAGU	chrM:8614-8840(+)$1	226	120	131	17.1836
CUCACCCUAAC	chrM:13589-13808(+)$1	219	32	43	17.2857
CUCCUCCUAGA	chrM:13804-14076(+)$1	272	183	194	14.5306
CUUAUCCUACC	chrM:6475-6684(+)$1	209	164	175	18.5102
CUCACCCUAAC	chrM:13437-13679(+)$1	242	184	195	17.2857
AUCAUCCUAGU	chrM:7757-7978(+)$1	221	39	50	17.8979
CUAAUACUAAC	chrM:10869-11084(+)$1	215	86	97	16.9795
CUCAUCCUAGC	chrM:15613-15863(+)$1	250	28	39	22.2857
CUCAUCCUAGC	chrM:15425-15658(+)$1	233	216	227	22.2857
AUCAUCCUAGC	chrM:10209-10429(+)$1	220	135	146	19.1224
AUCAUCCUAGC	chrM:10194-10408(+)$1	214	150	161	19.1224
CUAAUCUUAGU	chrM:12510-12733(+)$1	223	211	222	15.8571
CUUAUCCUACC	chrM:6514-6735(+)$1	221	125	136	18.5102
CUCACCAUAGU	chrM:9620-9854(+)$1	234	26	37	14.1224
CUCAUAAUAGU	chrM:13259-13474(+)$1	215	11	22	15.4489
CUCAUAAUAGU	chrM:13171-13415(+)$1	244	99	110	15.4489
CUUAUCCUACC	chrM:6484-6705(+)$1	221	155	166	18.5102
CUAAUCUUAGU	chrM:12622-12862(+)$1	240	99	110	15.8571
AUCAUCCUAGC	chrM:10187-10394(+)$1	207	157	168	19.1224
CUUAUCCUACC	chrM:6584-6793(+)$1	209	55	66	18.5102
CUCAUCCUAGC	chrM:15590-15813(+)$1	223	51	62	22.2857
AUCAUCCUAGC	chrM:10180-10387(+)$1	207	164	175	19.1224
CUCAUCCAAAC	chrM:11657-11868(+)$1	211	6	17	16.2653

#otherMatches

#Struct PSSM
:::::::FFFF	chrM:7778-7983(+)$1	205	18	29	17.8979
yyyyyyyyyyy	chrM:6535-6761(+)$1	226	104	115	18.5102
ee####bb!!e	chrM:13608-13840(+)$1	232	13	24	17.2857
yyyyyyyyyyy	chrM:6564-6772(+)$1	208	75	86	18.5102
:::::::::::	chrM:10795-11002(+)$1	207	160	171	16.9795
:::ccc"""a[	chrM:7783-7989(+)$1	206	13	24	17.8979
:::::::::::	chrM:10803-11027(+)$1	224	152	163	16.9795
:::::::::::	chrM:10756-10982(+)$1	226	199	210	16.9795
b::::::::::	chrM:9484-9706(+)$1	222	162	173	14.1224
:::::::::::	chrM:10782-10990(+)$1	208	173	184	16.9795
^^^^^^^^^dd	chrM:15458-15708(+)$1	250	183	194	22.2857
b::::::::::	chrM:9506-9728(+)$1	222	140	151	14.1224
:::::::::::	chrM:10791-10995(+)$1	204	164	175	16.9795
>>>>>>>>>dd	chrM:8594-8814(+)$1	220	140	151	17.1836
:::ccc"""a[	chrM:7744-7957(+)$1	213	52	63	17.8979
::::::eeeee	chrM:12533-12742(+)$1	209	188	199	15.8571
:::::::::::	chrM:10827-11055(+)$1	228	128	139	16.9795
e!!ddddoooo	chrM:15708-15927(+)$1	219	35	46	17.3877
:::::::::::	chrM:11471-11721(+)$1	250	192	203	16.2653
::::::FFFFF	chrM:12567-12821(+)$1	254	154	165	15.8571
>>>>>>>>>dd	chrM:8544-8784(+)$1	240	190	201	17.1836
yyyyyyyyyyy	chrM:6439-6675(+)$1	236	200	211	18.5102
:::::::::cc	chrM:10146-10373(+)$1	227	198	209	19.1224
b::::::::::	chrM:9528-9752(+)$1	224	118	129	14.1224
:::::::::::	chrM:13947-14170(+)$1	223	172	183	20.8571
>>>>>>>>>dd	chrM:8584-8794(+)$1	210	150	161	17.1836
>>>>>>>>>dd	chrM:8614-8840(+)$1	226	120	131	17.1836
ee####bb!!e	chrM:13589-13808(+)$1	219	32	43	17.2857
::::::ddddt	chrM:13804-14076(+)$1	272	183	194	14.5306
yyyyyyyyyyy	chrM:6475-6684(+)$1	209	164	175	18.5102
c::cccooooo	chrM:13437-13679(+)$1	242	184	195	17.2857
:::::::FFFF	chrM:7757-7978(+)$1	221	39	50	17.8979
:::::::::::	chrM:10869-11084(+)$1	215	86	97	16.9795
:::::::::::	chrM:15613-15863(+)$1	250	28	39	22.2857
^^^^^^^^^dd	chrM:15425-15658(+)$1	233	216	227	22.2857
dd!!bb[ccc[	chrM:10209-10429(+)$1	220	135	146	19.1224
55bb333ccc6	chrM:10194-10408(+)$1	214	150	161	19.1224
dddmmmmdddd	chrM:12510-12733(+)$1	223	211	222	15.8571
yyyyyyyyyyy	chrM:6514-6735(+)$1	221	125	136	18.5102
bb&&&&&&&bb	chrM:9620-9854(+)$1	234	26	37	14.1224
BBKKDDDD{BB	chrM:13259-13474(+)$1	215	11	22	15.4489
dd666666ccc	chrM:13171-13415(+)$1	244	99	110	15.4489
yyyyyyyyyyy	chrM:6484-6705(+)$1	221	155	166	18.5102
::::::eeeee	chrM:12622-12862(+)$1	240	99	110	15.8571
dd!!bb[ccc[	chrM:10187-10394(+)$1	207	157	168	19.1224
yyyyyyyyyyy	chrM:6584-6793(+)$1	209	55	66	18.5102
>>>>ffffff:	chrM:15590-15813(+)$1	223	51	62	22.2857
:::::::DDDD	chrM:10180-10387(+)$1	207	164	175	19.1224
:EEEEESSSSS	chrM:11657-11868(+)$1	211	6	17	16.2653

#DB
.......((((	chrM:7778-7983(+)$1	1	18	29	17.8979
...........	chrM:6535-6761(+)$1	1	104	115	18.5102
((....((..(	chrM:13608-13840(+)$1	1	13	24	17.2857
...........	chrM:6564-6772(+)$1	1	75	86	18.5102
...........	chrM:10795-11002(+)$1	1	160	171	16.9795
...(((...(.	chrM:7783-7989(+)$1	1	13	24	17.8979
...........	chrM:10803-11027(+)$1	1	152	163	16.9795
...........	chrM:10756-10982(+)$1	1	199	210	16.9795
)..........	chrM:9484-9706(+)$1	1	162	173	14.1224
...........	chrM:10782-10990(+)$1	1	173	184	16.9795
.........))	chrM:15458-15708(+)$1	1	183	194	22.2857
)..........	chrM:9506-9728(+)$1	1	140	151	14.1224
...........	chrM:10791-10995(+)$1	1	164	175	16.9795
.........))	chrM:8594-8814(+)$1	1	140	151	17.1836
...(((...(.	chrM:7744-7957(+)$1	1	52	63	17.8979
......(((((	chrM:12533-12742(+)$1	1	188	199	15.8571
...........	chrM:10827-11055(+)$1	1	128	139	16.9795
(..((((....	chrM:15708-15927(+)$1	1	35	46	17.3877
...........	chrM:11471-11721(+)$1	1	192	203	16.2653
......)))))	chrM:12567-12821(+)$1	1	154	165	15.8571
.........))	chrM:8544-8784(+)$1	1	190	201	17.1836
...........	chrM:6439-6675(+)$1	1	200	211	18.5102
.........((	chrM:10146-10373(+)$1	1	198	209	19.1224
)..........	chrM:9528-9752(+)$1	1	118	129	14.1224
...........	chrM:13947-14170(+)$1	1	172	183	20.8571
.........))	chrM:8584-8794(+)$1	1	150	161	17.1836
.........))	chrM:8614-8840(+)$1	1	120	131	17.1836
((....((..(	chrM:13589-13808(+)$1	1	32	43	17.2857
......((((.	chrM:13804-14076(+)$1	1	183	194	14.5306
...........	chrM:6475-6684(+)$1	1	164	175	18.5102
)..(((.....	chrM:13437-13679(+)$1	1	184	195	17.2857
.......((((	chrM:7757-7978(+)$1	1	39	50	17.8979
...........	chrM:10869-11084(+)$1	1	86	97	16.9795
...........	chrM:15613-15863(+)$1	1	28	39	22.2857
.........))	chrM:15425-15658(+)$1	1	216	227	22.2857
((..((.(((.	chrM:10209-10429(+)$1	1	135	146	19.1224
..))...))).	chrM:10194-10408(+)$1	1	150	161	19.1224
(((....))))	chrM:12510-12733(+)$1	1	211	222	15.8571
...........	chrM:6514-6735(+)$1	1	125	136	18.5102
((.......((	chrM:9620-9854(+)$1	1	26	37	14.1224
((..((((.((	chrM:13259-13474(+)$1	1	11	22	15.4489
))......)))	chrM:13171-13415(+)$1	1	99	110	15.4489
...........	chrM:6484-6705(+)$1	1	155	166	18.5102
......(((((	chrM:12622-12862(+)$1	1	99	110	15.8571
((..((.(((.	chrM:10187-10394(+)$1	1	157	168	19.1224
...........	chrM:6584-6793(+)$1	1	55	66	18.5102
....)))))).	chrM:15590-15813(+)$1	1	51	62	22.2857
.......))))	chrM:10180-10387(+)$1	1	164	175	19.1224
.(((((.....	chrM:11657-11868(+)$1	1	6	17	16.2653

#PSSM
C : 0.81	A : 0.18	
U : 1.00	
C : 0.55	U : 0.22	A : 0.22	
A : 0.97	C : 0.02	
U : 0.85	C : 0.14	
C : 0.71	A : 0.26	U : 0.02	
C : 0.79	A : 0.12	U : 0.08	
U : 0.95	A : 0.04	
A : 1.00	
G : 0.57	A : 0.28	C : 0.14	
C : 0.61	U : 0.36	A : 0.02	

#score	861.4897959183679
#seq	49
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_transcript_m2_run2.nuc.txt

#NT
UGGAGGGGUGGG	chr19:39907030-39907341(+)$1	311	29	41	20.4117
AGGAGGGCAGGG	chr3:184037287-184037546(+)$1	259	52	64	19.2352
GGGUGGGCUGGG	chr16:67227332-67227580(+)$1	248	113	125	16.4901
GGGAGGGCAGGG	chr7:44605986-44606263(-)$1	277	79	91	20.3137
UGGUGGAGAGGG	chr1:6271774-6272069(+)$1	295	43	55	16.2941
UGGAGGCCCGGG	chr2:97526711-97526960(-)$1	249	53	65	13.8431
AGGAGGUGAGGG	chr19:10505963-10506199(-)$1	236	23	35	17.8627
GAGAGAGGUGGG	chr22:50945578-50945881(-)$1	303	101	113	13.0588
AGCAGGGGUGGG	chr3:184033410-184033683(+)$1	273	251	263	16.1960
UGGUGGGGAGGG	chr1:227170180-227170409(+)$1	229	90	102	20.3137
CGGGGGGGCGGG	chr7:11013539-11013807(+)$1	268	222	234	17.7647
AGGAGGUGAGGA	chr3:47447144-47447379(+)$1	235	139	151	13.2549
GGGAGGGGCGGG	chr19:617983-618251(-)$1	268	250	262	21.3921
CGGACUGGAGGG	chr19:6744945-6745215(+)$1	270	191	203	13.7450
UGAGGGGGAGGG	chr8:145621352-145621622(-)$1	270	114	126	15.8039
GGGAGAGCCGGG	chr1:109823699-109824013(-)$1	314	221	233	14.8235
CGGUGGGGAGAG	chr19:3666810-3667089(-)$1	279	92	104	15.7058
GGGAGGGCAGUG	chr3:52514234-52514526(+)$1	292	192	204	16.0980
CGAAGUGGAGGG	chr19:17449213-17449474(+)$1	261	213	225	14.4313
UGCAGGUGAGGG	chr6:31656408-31656692(-)$1	284	188	200	14.4313
AGGAGUGGCUGG	chr1:16952407-16952655(-)$1	248	231	243	12.7647
CGGCUGGGAGGG	chr2:3623390-3623681(+)$1	291	105	117	14.7254
GGGUGGGGCUGG	chr19:42373737-42373952(+)$1	215	102	114	15.4117
AGGAGGGGAGGG	chr7:73107549-73107809(+)$1	260	36	48	21.8823
GGGUGGGGAGCG	chr6:109703052-109703342(-)$1	290	113	125	16.7843
GGGUGGGGCUGG	chr8:143359313-143359587(-)$1	274	129	141	15.4117
UGGAGGGCCGGG	chr17:72859874-72860135(-)$1	261	91	103	18.0588
GGCAGUGGAGGG	chr17:17721076-17721359(-)$1	283	158	170	15.6078
GGGCGGGGAGGG	chr2:178129072-178129325(-)$1	253	226	238	20.3137
CAGCGGGGAGGG	chrX:152957511-152957740(+)$1	229	68	80	15.1176
AGGGGUGGAGGG	chr10:72520004-72520239(+)$1	235	7	19	15.8039
GGGUGGGGCGGG	chr1:228289766-228290058(-)$1	292	88	100	19.4313
GCUAGGGGAGGG	chr19:47230068-47230340(-)$1	272	244	256	14.4313
UGGCUGGGAGGG	chr11:67048240-67048538(+)$1	298	87	99	15.1176
AAGAGGGGAUGG	chr9:130258130-130258379(+)$1	249	113	125	13.7450
GGAUGGGGAGGG	chr6:33164045-33164345(-)$1	300	2	14	17.0784
UGGAGUGGUGGG	chr22:19129819-19130118(-)$1	299	18	30	16.8823
CAGAGGGCAGGG	chr3:48642019-48642322(-)$1	303	265	277	15.1176
UGGAGGGCCGGC	chr16:133157-133426(+)$1	269	124	136	13.4509
GGGGGGGCCGGG	chr17:40272894-40273211(-)$1	317	90	102	16.1960
GGGUGGGGUGGG	chr1:981109-981348(+)$1	239	182	194	19.1372
UGGAGGGGGGGU	chr1:55518185-55518477(+)$1	292	92	104	15.1176
GGGAGCAGAGGG	chr22:20102601-20102853(-)$1	252	108	120	14.9215
CGGAGGGGUGAG	chr22:19706721-19706956(+)$1	235	7	19	15.8039
CGGAGGGGCGUG	chr13:21750330-21750604(-)$1	274	139	151	16.0980
GGGAGGGCAGGG	chr16:50337725-50337986(+)$1	261	80	92	20.3137
GGGAGGGGGGCG	chr11:64511452-64511735(-)$1	283	42	54	16.1960
GGGAGGGAAGGG	chr1:1230288-1230553(-)$1	265	113	125	19.3333
UGCUGGGGUGGG	chr16:2128066-2128328(+)$1	262	82	94	14.6274
AGGGGGGUUGGG	chr7:128036665-128036922(-)$1	257	73	85	13.8431

#otherMatches

#Struct PSSM
FFFFFFUUUUUU	chr3:48719845-48720110(-)$1	265	5	17	14.2352
DDDD{DDDD{EE	chr19:39907030-39907341(+)$1	311	29	41	20.4117
KBB{BB{BB{A{	chr3:184037287-184037546(+)$1	259	52	64	19.2352
hhh22eeeeecc	chr16:67227332-67227580(+)$1	248	113	125	16.4901
======="""cc	chr7:44605986-44606263(-)$1	277	79	91	20.3137
]ccc]=======	chr1:6271774-6272069(+)$1	295	43	55	16.2941
ssssscccffff	chr2:97526711-97526960(-)$1	249	53	65	13.8431
CAKKGGGGGGGK	chr19:10505963-10506199(-)$1	236	23	35	17.8627
]a333dddd]dd	chr22:50945578-50945881(-)$1	303	101	113	13.0588
9999gggggggi	chr3:184033410-184033683(+)$1	273	251	263	16.1960
mmmmdddda]bb	chr1:227170180-227170409(+)$1	229	90	102	20.3137
YYGGGGGGG}GG	chr7:11013539-11013807(+)$1	268	222	234	17.7647
:JJJJJJJJJJC	chr3:47447144-47447379(+)$1	235	139	151	13.2549
ee22cccfffff	chr19:617983-618251(-)$1	268	250	262	21.3921
cqqqqqqqqccc	chr19:6744945-6745215(+)$1	270	191	203	13.7450
GG}EEEEEBBYY	chr8:145621352-145621622(-)$1	270	114	126	15.8039
ggggg]a]dddd	chr1:109823699-109824013(-)$1	314	221	233	14.8235
EEEE{BBeeeee	chr19:3666810-3667089(-)$1	279	92	104	15.7058
:ggggggglllg	chr3:52514234-52514526(+)$1	292	192	204	16.0980
cc!!eeeee[cc	chr19:17449213-17449474(+)$1	261	213	225	14.4313
fggggggg"""e	chr6:31656408-31656692(-)$1	284	188	200	14.4313
GGG}CCCZZZEE	chr1:16952407-16952655(-)$1	248	231	243	12.7647
]ggggggg333f	chr2:3623390-3623681(+)$1	291	105	117	14.7254
gg!!a[gggggg	chr19:42373737-42373952(+)$1	215	102	114	15.4117
^^^^^^^^^^^^	chr7:73107549-73107809(+)$1	260	36	48	21.8823
CBB{GGGGGGG:	chr6:109703052-109703342(-)$1	290	113	125	16.7843
GGGCCCdddd[c	chr8:143359313-143359587(-)$1	274	129	141	15.4117
cccmmmmccc]c	chr17:72859874-72860135(-)$1	261	91	103	18.0588
Dbb[bb[fffff	chr17:17721076-17721359(-)$1	283	158	170	15.6078
GGGGDDDD}HHH	chr2:178129072-178129325(-)$1	253	226	238	20.3137
nnbb4444bbdd	chrX:152957511-152957740(+)$1	229	68	80	15.1176
{EEEEEA{FFFF	chr10:72520004-72520239(+)$1	235	7	19	15.8039
]ccc]=======	chr1:228289766-228290058(-)$1	292	88	100	19.4313
HHHHHHHH::::	chr19:47230068-47230340(-)$1	272	244	256	14.4313
iiiiiffffffc	chr11:67048240-67048538(+)$1	298	87	99	15.1176
hhh]eeeee:bb	chr9:130258130-130258379(+)$1	249	113	125	13.7450
EEE{JJJJJJJJ	chr6:33164045-33164345(-)$1	300	2	14	17.0784
ccc[ddddeeee	chr22:19129819-19130118(-)$1	299	18	30	16.8823
fff::::DDDDA	chr3:48642019-48642322(-)$1	303	265	277	15.1176
I}A::::eeeee	chr16:133157-133426(+)$1	269	124	136	13.4509
''''hhhhhhhh	chr17:40272894-40273211(-)$1	317	90	102	16.1960
ffff[dddd[cc	chr1:981109-981348(+)$1	239	182	194	19.1372
ddddbbccc]==	chr1:55518185-55518477(+)$1	292	92	104	15.1176
ccc[ccc!!ddd	chr22:20102601-20102853(-)$1	252	108	120	14.9215
:EEEEEFFFFFF	chr22:19706721-19706956(+)$1	235	7	19	15.8039
dd::hhhhhhhh	chr13:21750330-21750604(-)$1	274	139	151	16.0980
ffff]eeeeebb	chr16:50337725-50337986(+)$1	261	80	92	20.3137
pbb]a]eeeee:	chr11:64511452-64511735(-)$1	283	42	54	16.1960
HHHHHHHH:fff	chr1:1230288-1230553(-)$1	265	113	125	19.3333
gggg:EEEEEKK	chr16:2128066-2128328(+)$1	262	82	94	14.6274
##ffffff[eee	chr7:128036665-128036922(-)$1	257	73	85	13.8431

#DB
((((((......	chr3:48719845-48720110(-)$1	1	5	17	14.2352
((((.((((.((	chr19:39907030-39907341(+)$1	1	29	41	20.4117
.((.((.((.(.	chr3:184037287-184037546(+)$1	1	52	64	19.2352
)))..)))))((	chr16:67227332-67227580(+)$1	1	113	125	16.4901
(((((((...((	chr7:44605986-44606263(-)$1	1	79	91	20.3137
.))).)))))))	chr1:6271774-6272069(+)$1	1	43	55	16.2941
.....)))))))	chr2:97526711-97526960(-)$1	1	53	65	13.8431
((..(((((((.	chr19:10505963-10506199(-)$1	1	23	35	17.8627
.)...)))).))	chr22:50945578-50945881(-)$1	1	101	113	13.0588
....))))))))	chr3:184033410-184033683(+)$1	1	251	263	16.1960
....))))).))	chr1:227170180-227170409(+)$1	1	90	102	20.3137
..))))))).))	chr7:11013539-11013807(+)$1	1	222	234	17.7647
.)))))))))))	chr3:47447144-47447379(+)$1	1	139	151	13.2549
))..))))))))	chr19:617983-618251(-)$1	1	250	262	21.3921
(........)))	chr19:6744945-6745215(+)$1	1	191	203	13.7450
)).)))))))..	chr8:145621352-145621622(-)$1	1	114	126	15.8039
))))).).))))	chr1:109823699-109824013(-)$1	1	221	233	14.8235
((((.(((((((	chr19:3666810-3667089(-)$1	1	92	104	15.7058
.(((((((...)	chr3:52514234-52514526(+)$1	1	192	204	16.0980
((..(((((.((	chr19:17449213-17449474(+)$1	1	213	225	14.4313
((((((((...(	chr6:31656408-31656692(-)$1	1	188	200	14.4313
))).)))...))	chr1:16952407-16952655(-)$1	1	231	243	12.7647
.)))))))...)	chr2:3623390-3623681(+)$1	1	105	117	14.7254
((..(.((((((	chr19:42373737-42373952(+)$1	1	102	114	15.4117
............	chr7:73107549-73107809(+)$1	1	36	48	21.8823
(((.(((((((.	chr6:109703052-109703342(-)$1	1	113	125	16.7843
((((((((((.(	chr8:143359313-143359587(-)$1	1	129	141	15.4117
(((....))).)	chr17:72859874-72860135(-)$1	1	91	103	18.0588
)((.((.(((((	chr17:17721076-17721359(-)$1	1	158	170	15.6078
)))))))).)))	chr2:178129072-178129325(-)$1	1	226	238	20.3137
..))....))))	chrX:152957511-152957740(+)$1	1	68	80	15.1176
.((((((.((((	chr10:72520004-72520239(+)$1	1	7	19	15.8039
.))).)))))))	chr1:228289766-228290058(-)$1	1	88	100	19.4313
))))))))....	chr19:47230068-47230340(-)$1	1	244	256	14.4313
)))))))))))(	chr11:67048240-67048538(+)$1	1	87	99	15.1176
))).))))).((	chr9:130258130-130258379(+)$1	1	113	125	13.7450
(((.((((((((	chr6:33164045-33164345(-)$1	1	2	14	17.0784
(((.((((((((	chr22:19129819-19130118(-)$1	1	18	30	16.8823
)))....)))))	chr3:48642019-48642322(-)$1	1	265	277	15.1176
).)....(((((	chr16:133157-133426(+)$1	1	124	136	13.4509
....((((((((	chr17:40272894-40273211(-)$1	1	90	102	16.1960
((((.((((.((	chr1:981109-981348(+)$1	1	182	194	19.1372
))))))))).))	chr1:55518185-55518477(+)$1	1	92	104	15.1176
(((.(((..(((	chr22:20102601-20102853(-)$1	1	108	120	14.9215
.(((((((((((	chr22:19706721-19706956(+)$1	1	7	19	15.8039
))..((((((((	chr13:21750330-21750604(-)$1	1	139	151	16.0980
)))).)))))((	chr16:50337725-50337986(+)$1	1	80	92	20.3137
.)).).))))).	chr11:64511452-64511735(-)$1	1	42	54	16.1960
((((((((.(((	chr1:1230288-1230553(-)$1	1	113	125	19.3333
)))).(((((..	chr16:2128066-2128328(+)$1	1	82	94	14.6274
..((((((.(((	chr7:128036665-128036922(-)$1	1	73	85	13.8431

#PSSM
G : 0.39	U : 0.25	A : 0.17	C : 0.17	
G : 0.90	A : 0.07	C : 0.01	
G : 0.84	C : 0.07	A : 0.05	U : 0.01	
A : 0.60	U : 0.21	G : 0.09	C : 0.07	
G : 0.94	U : 0.03	C : 0.01	
G : 0.82	U : 0.11	A : 0.03	C : 0.01	
G : 0.86	A : 0.05	U : 0.05	C : 0.01	
G : 0.74	C : 0.21	A : 0.01	U : 0.01	
A : 0.54	C : 0.23	U : 0.17	G : 0.03	
G : 0.90	U : 0.09	
G : 0.88	A : 0.03	U : 0.03	C : 0.03	
G : 0.94	A : 0.01	C : 0.01	U : 0.01	

#score	834.4313725490206
#seq	51
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_transcript_m1_run2.nuc.txt

#NT
GGGGGCGGGGGGAA	chr1:1239443-1239722(-)$1	279	11	25	24.0535
GGGGGUGGGAGGAG	chr7:150038559-150038804(-)$1	245	21	35	26.7321
GGGGGUGGGGGGAG	chr12:31476457-31476730(-)$1	273	92	106	29.5892
gcgggugcggggCG	chr11:849855-850122(+)$1	267	128	142	18.8750
GGAGGCGGGGGGCG	chr12:2113144-2113424(-)$1	280	20	34	21.6428
AGGGGUGGGGGGUA	chr11:2158462-2158687(-)$1	225	92	106	19.9464
GUGGGAGGGAGGAG	chr2:220436163-220436409(-)$1	246	87	101	20.6607
GGGGGCGGUGGAAG	chr18:51750680-51751072(-)$1	392	324	338	19.7678
GGGGGUGGGGGGGG	chr22:50653968-50654238(+)$1	270	90	104	28.1607
GGGGCUGGGGAGGG	chr11:61634262-61634498(+)$1	236	136	150	19.9464
GGGGAGGGGCGGAG	chr7:7222109-7222405(+)$1	296	120	134	20.2142
gggguuggggggag	chr17:45771388-45771626(+)$1	238	12	26	25.4821
GAGGGCGGGGGGAG	chr14:32546426-32546659(+)$1	233	34	48	24.2321
GGCGGUGUGGGGAG	chrX:70798962-70799266(+)$1	304	231	245	20.8392
AGGGGCGGGAGGAG	chr13:99114670-99114942(-)$1	272	149	163	21.0178
GAGGGUGAGGGGUG	chr7:91875007-91875279(-)$1	272	118	132	19.8571
GGGGGCGGCGGGGG	chr17:80190698-80190952(+)$1	254	87	101	22.1785
ggggguguggggaa	chr14:69365934-69366197(-)$1	263	44	58	21.2857
GGGAGGGGGAGGAG	chr17:73775242-73775530(-)$1	288	101	115	20.5714
GGGGCGGGGUGGAG	chr10:104503653-104503904(+)$1	251	13	27	20.5714
gggggcggggggAG	chr12:50479078-50479348(+)$1	270	14	28	27.9821
AGAGGUGGGGGGUG	chr21:47566263-47566516(-)$1	253	112	126	19.8571
GGGGGUGGGUGGGG	chr15:75653086-75653382(-)$1	296	141	155	24.5892
GUGGGUGGGGGCGG	chr12:109124542-109124847(-)$1	305	118	132	20.7500
GGGGGUGGGGGGGC	chr19:1105751-1105996(+)$1	245	93	107	23.8750
CGAGGUGGGAGGAG	chr7:75619372-75619630(-)$1	258	58	72	18.6071
UGGGGUGGGGGCUG	chr15:101847703-101847962(-)$1	259	103	117	20.0357
GGGUGGGGGAGGAG	chr11:725439-725675(+)$1	236	106	120	20.3928
GGGGCGGGGCGGAG	chr1:110163583-110163877(+)$1	294	121	135	20.5714
gggagggggaggag	chr5:149865672-149865934(+)$1	262	100	114	20.5714
gggggugggGGGUG	chr2:242211970-242212198(-)$1	228	92	106	27.9821
GGGGCAGGGGGGGG	chr1:1154422-1154702(-)$1	280	105	119	22.1785
GGGGGUGAGGGUGG	chr16:1749157-1749424(+)$1	267	103	117	19.8571
GGGGGGAGGGGGCG	chr20:57467383-57467604(+)$1	221	195	209	21.1964
guggguggcgggug	chr11:1782781-1783054(-)$1	273	115	129	19.8571
GGAGGUGGGGGGUG	chr14:103564076-103564423(+)$1	347	160	174	23.9642
GAGGGUUGGGGGAG	chr6:155055063-155055300(+)$1	237	183	197	21.4642
gcggggagggggag	chrX:109245767-109246065(+)$1	298	49	63	19.5892
CGGGGCGGGGGGUG	chr17:7155843-7156136(+)$1	293	94	108	22.2678
GGGGGUGGUGGGAG	chr2:159313495-159313744(+)$1	249	66	80	25.2142
GGGGAGGGGGUGAG	chr20:32246268-32246583(-)$1	315	89	103	19.3214
GGGGGAGGGGGCGG	chr16:50626643-50626869(+)$1	226	47	61	22.1785
GGGGGUGGGGCCAG	chr20:60897534-60897771(-)$1	237	172	186	21.3750
GGGGGAGGGGGGUU	chr16:69419296-69419569(-)$1	273	88	102	21.3750
GGGGCUGGGGUGGG	chr5:59769530-59769788(-)$1	258	92	106	20.0357
GAGGGUGGGAGGAG	chr8:144585305-144585572(-)$1	267	97	111	22.9821
GGGGGUGGGGGAGG	chr1:173990802-173991089(-)$1	287	239	253	24.3214
GGAGGCGGGAGGAG	chr17:70118294-70118576(+)$1	282	118	132	21.1071
GGGGCCGGGAGGAG	chr20:61908375-61908624(+)$1	249	53	67	21.4642
GGGAGGUGGGGGAG	chr2:228337301-228337599(+)$1	298	42	56	19.0535
GGGGGUGGGGGGAA	chr8:103423741-103424023(-)$1	282	207	221	25.6607
GGGGGUAGGGGUUG	chr1:1242506-1242716(-)$1	210	88	102	19.7678
GUGGGCGGGGGGUG	chr2:242689715-242689963(+)$1	248	77	91	22.6250
gggggcgggggcgg	chr9:130661463-130661823(-)$1	360	72	86	22.8928
GGGGGUGGGGGAAA	chr17:1669920-1670176(+)$1	256	152	166	21.8214

#otherMatches

#Struct PSSM
dd!!dddd[ccc[b	chr19:808394-808657(+)$1	263	78	92	19.5892
ceeeee[ccc"""b	chr1:1239443-1239722(-)$1	279	11	25	24.0535
eeee"""bb####a	chr7:150038559-150038804(-)$1	245	21	35	26.7321
CCKKHHHHHHHH{G	chr12:31476457-31476730(-)$1	273	92	106	29.5892
======ccc]bbdd	chr11:849855-850122(+)$1	267	128	142	18.8750
b]a:dddd!!ccc[	chr12:2113144-2113424(-)$1	280	20	34	21.6428
NCCC{CCCKKCCC:	chr11:2158462-2158687(-)$1	225	92	106	19.9464
MCCC:::::::::c	chr2:220436163-220436409(-)$1	246	87	101	20.6607
"""ccc[dddd!!g	chr18:51750680-51751072(-)$1	392	324	338	19.7678
============""	chr22:50653968-50654238(+)$1	270	90	104	28.1607
::::bb[bb$$$$$	chr11:61634262-61634498(+)$1	236	136	150	19.9464
JJJJJJJJJJJJJJ	chr7:7222109-7222405(+)$1	296	120	134	20.2142
:::::::::::::a	chr17:45771388-45771626(+)$1	238	12	26	25.4821
$$bb[bbqqqqqqq	chr14:32546426-32546659(+)$1	233	34	48	24.2321
f]a:bb[auuuuuu	chrX:70798962-70799266(+)$1	304	231	245	20.8392
HHHHHHHHLLLCCC	chr13:99114670-99114942(-)$1	272	149	163	21.0178
dddd]bb]eeeee4	chr7:91875007-91875279(-)$1	272	118	132	19.8571
ffffff22gggggg	chr17:80190698-80190952(+)$1	254	87	101	22.1785
[a[a[dddd[a+++	chr14:69365934-69366197(-)$1	263	44	58	21.2857
e55555a]ffffff	chr17:73775242-73775530(-)$1	288	101	115	20.5714
ooooooa]hhhhhh	chr10:104503653-104503904(+)$1	251	13	27	20.5714
HHHHHHMMMMIIII	chr12:50479078-50479348(+)$1	270	14	28	27.9821
gg[hhhhhhhhccc	chr21:47566263-47566516(-)$1	253	112	126	19.8571
ffffffHHHHHHHH	chr15:75653086-75653382(-)$1	296	141	155	24.5892
ffffff!!ffffff	chr12:109124542-109124847(-)$1	305	118	132	20.7500
gggggg22a]a]cc	chr19:1105751-1105996(+)$1	245	93	107	23.8750
cnnnnnccc::eee	chr7:75619372-75619630(-)$1	258	58	72	18.6071
hhh22bb]dddddd	chr15:101847703-101847962(-)$1	259	103	117	20.0357
====999999999b	chr11:725439-725675(+)$1	236	106	120	20.3928
ggggggJJJJJJJJ	chr1:110163583-110163877(+)$1	294	121	135	20.5714
cc:::GGGGGGG::	chr5:149865672-149865934(+)$1	262	100	114	20.5714
{EEEEELLLEEEEE	chr2:242211970-242212198(-)$1	228	92	106	27.9821
HHKKFFFFFF{Aee	chr1:1154422-1154702(-)$1	280	105	119	22.1785
HHHHHHH}DDDD:G	chr16:1749157-1749424(+)$1	267	103	117	19.8571
::::::::::::A}	chr20:57467383-57467604(+)$1	221	195	209	21.1964
ddd]bb22ccc]a2	chr11:1782781-1783054(-)$1	273	115	129	19.8571
66666eeeee22a]	chr14:103564076-103564423(+)$1	347	160	174	23.9642
cc333=========	chr6:155055063-155055300(+)$1	237	183	197	21.4642
bb^^^^^^^^^^^^	chrX:109245767-109246065(+)$1	298	49	63	19.5892
dddd]bb]eeeeec	chr17:7155843-7156136(+)$1	293	94	108	22.2678
BB{FFFFFF{AKKA	chr2:159313495-159313744(+)$1	249	66	80	25.2142
fffff88888888e	chr20:32246268-32246583(-)$1	315	89	103	19.3214
CCHHHHHHHHKKGG	chr16:50626643-50626869(+)$1	226	47	61	22.1785
ffffff"""cccnn	chr20:60897534-60897771(-)$1	237	172	186	21.3750
{BB{CCC{FFFFFF	chr16:69419296-69419569(-)$1	273	88	102	21.3750
hhhhhhh::::CCC	chr5:59769530-59769788(-)$1	258	92	106	20.0357
E::HHHHHHHHccc	chr8:144585305-144585572(-)$1	267	97	111	22.9821
gggggg333hhhhh	chr1:173990802-173991089(-)$1	287	239	253	24.3214
GGGGGDDDDJJJJJ	chr17:70118294-70118576(+)$1	282	118	132	21.1071
iiiiiiiiiGGGGG	chr20:61908375-61908624(+)$1	249	53	67	21.4642
qqqqqqqqffffff	chr2:228337301-228337599(+)$1	298	42	56	19.0535
FFFF}A}DDDD}CC	chr8:103423741-103424023(-)$1	282	207	221	25.6607
33dddd:GGGGGGG	chr1:1242506-1242716(-)$1	210	88	102	19.7678
oooooeeeee:CCC	chr2:242689715-242689963(+)$1	248	77	91	22.6250
CCC{HHHHHHHHDD	chr9:130661463-130661823(-)$1	360	72	86	22.8928
yyyyyyyyyyyyyh	chr17:1669920-1670176(+)$1	256	152	166	21.8214

#DB
((..((((.(((.(	chr19:808394-808657(+)$1	1	78	92	19.5892
((((((.(((...(	chr1:1239443-1239722(-)$1	1	11	25	24.0535
((((...((....(	chr7:150038559-150038804(-)$1	1	21	35	26.7321
((..((((((((.(	chr12:31476457-31476730(-)$1	1	92	106	29.5892
))))))))).))))	chr11:849855-850122(+)$1	1	128	142	18.8750
).).((((..(((.	chr12:2113144-2113424(-)$1	1	20	34	21.6428
.(((.(((..(((.	chr11:2158462-2158687(-)$1	1	92	106	19.9464
.(((.........(	chr2:220436163-220436409(-)$1	1	87	101	20.6607
...(((.((((..(	chr18:51750680-51751072(-)$1	1	324	338	19.7678
((((((((((((..	chr22:50653968-50654238(+)$1	1	90	104	28.1607
....((.((.....	chr11:61634262-61634498(+)$1	1	136	150	19.9464
))))))))))))))	chr7:7222109-7222405(+)$1	1	120	134	20.2142
.............(	chr17:45771388-45771626(+)$1	1	12	26	25.4821
..((.((.......	chr14:32546426-32546659(+)$1	1	34	48	24.2321
).).((.(......	chrX:70798962-70799266(+)$1	1	231	245	20.8392
((((((((...(((	chr13:99114670-99114942(-)$1	1	149	163	21.0178
)))).)).))))).	chr7:91875007-91875279(-)$1	1	118	132	19.8571
))))))..))))))	chr17:80190698-80190952(+)$1	1	87	101	22.1785
.(.(.((((.(...	chr14:69365934-69366197(-)$1	1	44	58	21.2857
).....).))))))	chr17:73775242-73775530(-)$1	1	101	115	20.5714
......).))))))	chr10:104503653-104503904(+)$1	1	13	27	20.5714
((((((....((((	chr12:50479078-50479348(+)$1	1	14	28	27.9821
((.(((((((((((	chr21:47566263-47566516(-)$1	1	112	126	19.8571
))))))))))))))	chr15:75653086-75653382(-)$1	1	141	155	24.5892
((((((..((((((	chr12:109124542-109124847(-)$1	1	118	132	20.7500
))))))..).).))	chr19:1105751-1105996(+)$1	1	93	107	23.8750
(.....)))..(((	chr7:75619372-75619630(-)$1	1	58	72	18.6071
)))..)).))))))	chr15:101847703-101847962(-)$1	1	103	117	20.0357
)))).........)	chr11:725439-725675(+)$1	1	106	120	20.3928
))))))))))))))	chr1:110163583-110163877(+)$1	1	121	135	20.5714
))...)))))))..	chr5:149865672-149865934(+)$1	1	100	114	20.5714
.(((((...(((((	chr2:242211970-242212198(-)$1	1	92	106	27.9821
((..((((((.(((	chr1:1154422-1154702(-)$1	1	105	119	22.1785
))))))).)))).(	chr16:1749157-1749424(+)$1	1	103	117	19.8571
............).	chr20:57467383-57467604(+)$1	1	195	209	21.1964
))).))..))).).	chr11:1782781-1783054(-)$1	1	115	129	19.8571
.....)))))..).	chr14:103564076-103564423(+)$1	1	160	174	23.9642
))...)))))))))	chr6:155055063-155055300(+)$1	1	183	197	21.4642
((............	chrX:109245767-109246065(+)$1	1	49	63	19.5892
)))).)).))))))	chr17:7155843-7156136(+)$1	1	94	108	22.2678
((.((((((.(..(	chr2:159313495-159313744(+)$1	1	66	80	25.2142
)))))........)	chr20:32246268-32246583(-)$1	1	89	103	19.3214
((((((((((..((	chr16:50626643-50626869(+)$1	1	47	61	22.1785
((((((...(((..	chr20:60897534-60897771(-)$1	1	172	186	21.3750
.((.(((.((((((	chr16:69419296-69419569(-)$1	1	88	102	21.3750
)))))))....(((	chr5:59769530-59769788(-)$1	1	92	106	20.0357
)..(((((((((((	chr8:144585305-144585572(-)$1	1	97	111	22.9821
))))))...)))))	chr1:173990802-173991089(-)$1	1	239	253	24.3214
))))))))))))))	chr17:70118294-70118576(+)$1	1	118	132	21.1071
)))))))))(((((	chr20:61908375-61908624(+)$1	1	53	67	21.4642
........))))))	chr2:228337301-228337599(+)$1	1	42	56	19.0535
)))).).)))).))	chr8:103423741-103424023(-)$1	1	207	221	25.6607
..)))).(((((((	chr1:1242506-1242716(-)$1	1	88	102	19.7678
.....))))).)))	chr2:242689715-242689963(+)$1	1	77	91	22.6250
(((.((((((((((	chr9:130661463-130661823(-)$1	1	72	86	22.8928
.............)	chr17:1669920-1670176(+)$1	1	152	166	21.8214

#PSSM
G : 0.71	g : 0.16	C : 0.05	A : 0.05	U : 0.01	
G : 0.71	g : 0.10	A : 0.07	U : 0.05	c : 0.03	u : 0.01	
G : 0.73	g : 0.16	A : 0.08	C : 0.01	
G : 0.78	g : 0.14	A : 0.03	U : 0.01	a : 0.01	
G : 0.69	g : 0.14	C : 0.10	A : 0.03	u : 0.01	
U : 0.44	C : 0.17	G : 0.14	u : 0.08	A : 0.07	c : 0.03	g : 0.03	
G : 0.76	g : 0.14	A : 0.03	U : 0.03	a : 0.01	
G : 0.78	g : 0.12	A : 0.03	c : 0.01	U : 0.01	u : 0.01	
G : 0.76	g : 0.14	U : 0.03	A : 0.01	C : 0.01	c : 0.01	
G : 0.62	A : 0.16	g : 0.12	C : 0.03	U : 0.03	a : 0.01	
G : 0.78	g : 0.14	U : 0.03	A : 0.01	C : 0.01	
G : 0.69	g : 0.12	C : 0.07	A : 0.05	U : 0.03	c : 0.01	
A : 0.44	G : 0.21	U : 0.17	a : 0.07	C : 0.05	u : 0.01	g : 0.01	
G : 0.78	g : 0.08	A : 0.07	a : 0.01	C : 0.01	U : 0.01	

#score	1232.0000000000007
#seq	56
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF756RYJ_AARS_transcript_m1_run2.nuc.txt

#NT
AAUA	chr5:137896639-137896867(-)$1	228	171	175	12.0000
AAUA	chr11:65190364-65190611(+)$1	247	98	102	12.0000
AAUA	chr19:45981777-45982012(-)$1	235	53	57	12.0000
AAUA	chr19:893460-893689(+)$1	229	16	20	12.0000
AAUA	chr19:45981755-45981977(-)$1	222	18	22	12.0000
AAUA	chrM:488-714(+)$1	226	0	4	12.0000
AAUA	chrM:14164-14374(-)$1	210	54	58	12.0000
AAUA	chrM:14366-14602(-)$1	236	86	90	12.0000
AAUA	chrM:14252-14476(-)$1	224	156	160	12.0000
AAUA	chr11:65192395-65192685(+)$1	290	171	175	12.0000
AAUA	chr6:31698285-31698537(-)$1	252	142	146	12.0000
AAUA	chrM:4192-4429(+)$1	237	74	78	12.0000
AAUA	chr7:148638551-148638758(+)$1	207	1	5	12.0000
AAUA	chrM:4327-4548(+)$1	221	89	93	12.0000
AAUA	chr3:160232598-160232823(-)$1	225	6	10	12.0000
AAUA	chr11:93454755-93454985(+)$1	230	58	62	12.0000
AAUA	chr9:100777607-100777855(+)$1	248	241	245	12.0000
AAUA	chr5:134260103-134260386(+)$1	283	63	67	12.0000
AAUA	chr11:65192485-65192764(+)$1	279	81	85	12.0000
AAUA	chr11:65190342-65190564(+)$1	222	120	124	12.0000
AAUA	chrM:3094-3320(+)$1	226	47	51	12.0000
AAUA	chrM:516-725(+)$1	209	88	92	12.0000
AAUA	chrM:4348-4557(+)$1	209	68	72	12.0000
AAUA	chrM:14276-14505(-)$1	229	185	189	12.0000
aaua	chr8:9629645-9629943(+)$1	298	51	55	12.0000
aaua	chr8:9628391-9628655(+)$1	264	86	90	12.0000
AAUA	chr11:62622001-62622220(-)$1	219	102	106	12.0000
AAUA	chrM:14157-14364(-)$1	207	44	48	12.0000
AAUA	chrM:3084-3294(+)$1	210	57	61	12.0000
AAUA	chrM:14213-14422(-)$1	209	102	106	12.0000
AAUA	chr3:160232594-160232798(-)$1	204	126	130	12.0000
AAUA	chrM:14174-14397(-)$1	223	77	81	12.0000
AAUA	chr2:149639200-149639438(-)$1	238	49	53	12.0000
AAUA	chrM:4319-4527(+)$1	208	97	101	12.0000
aaua	chr8:9629524-9629794(+)$1	270	172	176	12.0000
AAUA	chr19:34882055-34882329(+)$1	274	229	233	12.0000
AAUA	chrM:14222-14452(-)$1	230	132	136	12.0000
AAUA	chrM:12068-12305(+)$1	237	73	77	12.0000

#otherMatches

#Struct PSSM
iiii	chr11:62622020-62622237(-)$1	217	119	123	12.0000
gggg	chr5:137896639-137896867(-)$1	228	171	175	12.0000
6666	chr11:65190364-65190611(+)$1	247	98	102	12.0000
::::	chr19:45981777-45982012(-)$1	235	53	57	12.0000
::::	chr19:893460-893689(+)$1	229	16	20	12.0000
::::	chr19:45981755-45981977(-)$1	222	18	22	12.0000
::::	chrM:488-714(+)$1	226	0	4	12.0000
:HHH	chrM:14164-14374(-)$1	210	54	58	12.0000
ddd2	chrM:14366-14602(-)$1	236	86	90	12.0000
nnnc	chrM:14252-14476(-)$1	224	156	160	12.0000
iiii	chr11:65192395-65192685(+)$1	290	171	175	12.0000
>>>>	chr6:31698285-31698537(-)$1	252	142	146	12.0000
oooo	chrM:4192-4429(+)$1	237	74	78	12.0000
::::	chr7:148638551-148638758(+)$1	207	1	5	12.0000
nnnn	chrM:4327-4548(+)$1	221	89	93	12.0000
GGGG	chr3:160232598-160232823(-)$1	225	6	10	12.0000
c###	chr11:93454755-93454985(+)$1	230	58	62	12.0000
::::	chr9:100777607-100777855(+)$1	248	241	245	12.0000
eees	chr5:134260103-134260386(+)$1	283	63	67	12.0000
66cc	chr11:65192485-65192764(+)$1	279	81	85	12.0000
6666	chr11:65190342-65190564(+)$1	222	120	124	12.0000
:::e	chrM:3094-3320(+)$1	226	47	51	12.0000
]ccc	chrM:516-725(+)$1	209	88	92	12.0000
nnnn	chrM:4348-4557(+)$1	209	68	72	12.0000
nnnc	chrM:14276-14505(-)$1	229	185	189	12.0000
d22e	chr8:9629645-9629943(+)$1	298	51	55	12.0000
$$$$	chr8:9628391-9628655(+)$1	264	86	90	12.0000
$$$d	chr11:62622001-62622220(-)$1	219	102	106	12.0000
HHHH	chrM:14157-14364(-)$1	207	44	48	12.0000
++++	chrM:3084-3294(+)$1	210	57	61	12.0000
4444	chrM:14213-14422(-)$1	209	102	106	12.0000
:::g	chr3:160232594-160232798(-)$1	204	126	130	12.0000
gHHH	chrM:14174-14397(-)$1	223	77	81	12.0000
tttt	chr2:149639200-149639438(-)$1	238	49	53	12.0000
nnnn	chrM:4319-4527(+)$1	208	97	101	12.0000
d22e	chr8:9629524-9629794(+)$1	270	172	176	12.0000
###f	chr19:34882055-34882329(+)$1	274	229	233	12.0000
4444	chrM:14222-14452(-)$1	230	132	136	12.0000
::::	chrM:12068-12305(+)$1	237	73	77	12.0000

#DB
))))	chr11:62622020-62622237(-)$1	1	119	123	12.0000
((((	chr5:137896639-137896867(-)$1	1	171	175	12.0000
....	chr11:65190364-65190611(+)$1	1	98	102	12.0000
....	chr19:45981777-45982012(-)$1	1	53	57	12.0000
....	chr19:893460-893689(+)$1	1	16	20	12.0000
....	chr19:45981755-45981977(-)$1	1	18	22	12.0000
....	chrM:488-714(+)$1	1	0	4	12.0000
.(((	chrM:14164-14374(-)$1	1	54	58	12.0000
))).	chrM:14366-14602(-)$1	1	86	90	12.0000
...)	chrM:14252-14476(-)$1	1	156	160	12.0000
((((	chr11:65192395-65192685(+)$1	1	171	175	12.0000
....	chr6:31698285-31698537(-)$1	1	142	146	12.0000
....	chrM:4192-4429(+)$1	1	74	78	12.0000
....	chr7:148638551-148638758(+)$1	1	1	5	12.0000
....	chrM:4327-4548(+)$1	1	89	93	12.0000
((((	chr3:160232598-160232823(-)$1	1	6	10	12.0000
(...	chr11:93454755-93454985(+)$1	1	58	62	12.0000
....	chr9:100777607-100777855(+)$1	1	241	245	12.0000
(((.	chr5:134260103-134260386(+)$1	1	63	67	12.0000
..))	chr11:65192485-65192764(+)$1	1	81	85	12.0000
....	chr11:65190342-65190564(+)$1	1	120	124	12.0000
...(	chrM:3094-3320(+)$1	1	47	51	12.0000
.)))	chrM:516-725(+)$1	1	88	92	12.0000
....	chrM:4348-4557(+)$1	1	68	72	12.0000
...)	chrM:14276-14505(-)$1	1	185	189	12.0000
)..)	chr8:9629645-9629943(+)$1	1	51	55	12.0000
....	chr8:9628391-9628655(+)$1	1	86	90	12.0000
...(	chr11:62622001-62622220(-)$1	1	102	106	12.0000
((((	chrM:14157-14364(-)$1	1	44	48	12.0000
....	chrM:3084-3294(+)$1	1	57	61	12.0000
....	chrM:14213-14422(-)$1	1	102	106	12.0000
...(	chr3:160232594-160232798(-)$1	1	126	130	12.0000
)(((	chrM:14174-14397(-)$1	1	77	81	12.0000
....	chr2:149639200-149639438(-)$1	1	49	53	12.0000
....	chrM:4319-4527(+)$1	1	97	101	12.0000
)..)	chr8:9629524-9629794(+)$1	1	172	176	12.0000
...(	chr19:34882055-34882329(+)$1	1	229	233	12.0000
....	chrM:14222-14452(-)$1	1	132	136	12.0000
....	chrM:12068-12305(+)$1	1	73	77	12.0000

#PSSM
A : 0.92	a : 0.07	
A : 0.92	a : 0.07	
U : 0.92	u : 0.07	
A : 0.92	a : 0.07	

#score	468.00000000000006
#seq	39
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_CDS_m3_run1.nuc.txt

#NT
GGCCGGGG	chr19:862992-863267(+)$1	275	49	57	15.5625
GGGCGGAG	chr13:114144754-114145075(-)$1	321	25	33	16.0833
GGGCGGAG	chr3:23851852-23852198(+)$1	346	205	213	16.0833
GGGCGGGG	chr13:114144504-114144848(-)$1	344	110	118	20.0416
gggugggg	chr2:54197790-54198049(-)$1	259	71	79	15.7708
GGGCGGGG	chr9:131012905-131013182(+)$1	277	27	35	20.0416
GGGCGGCG	chr12:111180378-111180616(-)$1	238	166	174	16.3958
gggcgggg	chr15:80215322-80215641(-)$1	319	173	181	20.0416
CGGCGGGG	chr17:80231148-80231435(-)$1	287	23	31	16.1875
UGGCGGGG	chr6:31730659-31730979(+)$1	320	189	197	16.1875
GGGCGGUG	chr16:31044904-31045244(+)$1	340	69	77	15.9791
Uggcgggg	chr17:47841168-47841485(-)$1	317	37	45	16.1875
UGGCGGGG	chr3:49050061-49050364(+)$1	303	279	287	16.1875
GGGCGGGC	chr17:7476712-7476959(+)$1	247	62	70	15.2499
GGGCGUGG	chr3:49049827-49050107(+)$1	280	124	132	16.1875
GCGCGGGG	chr5:179248427-179248714(+)$1	287	197	205	15.3541
GGCCGGGG	chr16:85646881-85647134(+)$1	253	140	148	15.5625
GGGCGCGG	chr19:2270539-2270774(+)$1	235	61	69	16.0833
GGGCGUGG	chr1:153615728-153615942(+)$1	214	72	80	16.1875
GGGUGGGG	chr6:28872016-28872413(-)$1	397	328	336	15.7708
GGGCGGGG	chr8:145693794-145694067(+)$1	273	113	121	20.0416
GGGCGAGG	chr9:101558485-101558795(-)$1	310	24	32	16.1875
AGGCGGGG	chr19:10221604-10221954(+)$1	350	159	167	16.0833
GGGCUGGG	chr16:1835478-1835792(+)$1	314	168	176	15.7708
GGGCGAGG	chr19:2270369-2270619(+)$1	250	91	99	16.1875
CGGCGGGG	chr11:114310160-114310499(+)$1	339	248	256	16.1875
gggcgggg	chr19:1592468-1592843(-)$1	375	74	82	20.0416
GGGCGCGG	chr19:2270478-2270739(+)$1	261	122	130	16.0833
gggcuggg	chr19:10222193-10222511(+)$1	318	113	121	15.7708
GGGCGGGG	chr16:88714409-88714793(-)$1	384	366	374	20.0416
gggcggcg	chr19:10407012-10407356(+)$1	344	24	32	16.3958
GGGCGGGG	chr5:138629678-138629996(+)$1	318	155	163	20.0416
gggcggcg	chr21:35445786-35446180(+)$1	394	382	390	16.3958
GGGCGGGG	chr12:132414114-132414442(+)$1	328	122	130	20.0416
GGGCCGGG	chr2:54197715-54197990(-)$1	275	245	253	15.5625
GGGCGUGG	chr1:153615710-153615928(+)$1	218	90	98	16.1875
gggcgggg	chr7:151216370-151216699(-)$1	329	264	272	20.0416
GUGCGGGG	chr19:2444260-2444555(-)$1	295	233	241	15.3541
CGGCGGGG	chr18:3451868-3452127(+)$1	259	168	176	16.1875
GGGUGGGG	chr9:139565298-139565563(+)$1	265	55	63	15.7708
GGGAGGGG	chr15:80214902-80215226(-)$1	324	122	130	15.5625
GGGCUGGG	chr22:45724171-45724448(+)$1	277	105	113	15.7708
GGACGGGG	chr22:50016987-50017311(-)$1	324	158	166	15.4583
gggcggcg	chr19:10406946-10407212(+)$1	266	90	98	16.3958
GGGCGAGG	chr19:2270419-2270678(+)$1	259	41	49	16.1875
AGGCGGGG	chr1:228329186-228329462(+)$1	276	43	51	16.0833
gggcggcg	chr19:10406896-10407146(+)$1	250	140	148	16.3958

#otherMatches

#Struct PSSM
ff[a[a[c	chr14:50778580-50779004(-)$1	424	50	58	20.0416
:ggggggg	chr19:862992-863267(+)$1	275	49	57	15.5625
eeeee22e	chr13:114144754-114145075(-)$1	321	25	33	16.0833
LLJJJJJJ	chr3:23851852-23852198(+)$1	346	205	213	16.0833
A{EEEEE{	chr13:114144504-114144848(-)$1	344	110	118	20.0416
7a]ccc]d	chr2:54197790-54198049(-)$1	259	71	79	15.7708
FFFF{DDD	chr9:131012905-131013182(+)$1	277	27	35	20.0416
oa]a22a]	chr12:111180378-111180616(-)$1	238	166	174	16.3958
mmmmbb]c	chr15:80215322-80215641(-)$1	319	173	181	20.0416
HHHHHHH{	chr17:80231148-80231435(-)$1	287	23	31	16.1875
hhh:cccl	chr6:31730659-31730979(+)$1	320	189	197	16.1875
eee]eeee	chr16:31044904-31045244(+)$1	340	69	77	15.9791
d]eeeee:	chr17:47841168-47841485(-)$1	317	37	45	16.1875
dllldddd	chr3:49050061-49050364(+)$1	303	279	287	16.1875
ma]dddd]	chr17:7476712-7476959(+)$1	247	62	70	15.2499
ZZDDDDBB	chr3:49049827-49050107(+)$1	280	124	132	16.1875
ddddmmmm	chr5:179248427-179248714(+)$1	287	197	205	15.3541
cc!!eeee	chr16:85646881-85647134(+)$1	253	140	148	15.5625
JJJJJJJJ	chr19:2270539-2270774(+)$1	235	61	69	16.0833
eee[a[hh	chr1:153615728-153615942(+)$1	214	72	80	16.1875
hhhhhhhh	chr6:28872016-28872413(-)$1	397	328	336	15.7708
FFFF:::g	chr8:145693794-145694067(+)$1	273	113	121	20.0416
ma]bb::c	chr9:101558485-101558795(-)$1	310	24	32	16.1875
d!!eeeee	chr19:10221604-10221954(+)$1	350	159	167	16.0833
eeeee===	chr16:1835478-1835792(+)$1	314	168	176	15.7708
ffffEEEE	chr19:2270369-2270619(+)$1	250	91	99	16.1875
e]bbcccg	chr11:114310160-114310499(+)$1	339	248	256	16.1875
ddddmmmm	chr19:1592468-1592843(-)$1	375	74	82	20.0416
hhhhhhhE	chr19:2270478-2270739(+)$1	261	122	130	16.0833
ggggggga	chr19:10222193-10222511(+)$1	318	113	121	15.7708
DD}FFFFF	chr16:88714409-88714793(-)$1	384	366	374	20.0416
fnnnnnff	chr19:10407012-10407356(+)$1	344	24	32	16.3958
]ccc]a]a	chr5:138629678-138629996(+)$1	318	155	163	20.0416
fffFFFFF	chr21:35445786-35446180(+)$1	394	382	390	16.3958
======dd	chr12:132414114-132414442(+)$1	328	122	130	20.0416
ZZZDDDD}	chr2:54197715-54197990(-)$1	275	245	253	15.5625
hhhh]aJJ	chr1:153615710-153615928(+)$1	218	90	98	16.1875
dd22====	chr7:151216370-151216699(-)$1	329	264	272	20.0416
gggeeeee	chr19:2444260-2444555(-)$1	295	233	241	15.3541
cceeeeee	chr18:3451868-3452127(+)$1	259	168	176	16.1875
eeee[a[a	chr9:139565298-139565563(+)$1	265	55	63	15.7708
C}CCC}EE	chr15:80214902-80215226(-)$1	324	122	130	15.5625
hhhhh]a2	chr22:45724171-45724448(+)$1	277	105	113	15.7708
dd!!eeee	chr22:50016987-50017311(-)$1	324	158	166	15.4583
lffffff]	chr19:10406946-10407212(+)$1	266	90	98	16.3958
EEEEMMMM	chr19:2270419-2270678(+)$1	259	41	49	16.1875
gggggggg	chr1:228329186-228329462(+)$1	276	43	51	16.0833
ffgggggg	chr19:10406896-10407146(+)$1	250	140	148	16.3958

#DB
((.(.(.(	chr14:50778580-50779004(-)$1	1	50	58	20.0416
.(((((((	chr19:862992-863267(+)$1	1	49	57	15.5625
)))))..)	chr13:114144754-114145075(-)$1	1	25	33	16.0833
..((((((	chr3:23851852-23852198(+)$1	1	205	213	16.0833
(.(((((.	chr13:114144504-114144848(-)$1	1	110	118	20.0416
.).))).)	chr2:54197790-54198049(-)$1	1	71	79	15.7708
((((.(((	chr9:131012905-131013182(+)$1	1	27	35	20.0416
.).)..).	chr12:111180378-111180616(-)$1	1	166	174	16.3958
....)).)	chr15:80215322-80215641(-)$1	1	173	181	20.0416
(((((((.	chr17:80231148-80231435(-)$1	1	23	31	16.1875
))).(((.	chr6:31730659-31730979(+)$1	1	189	197	16.1875
))).))))	chr16:31044904-31045244(+)$1	1	69	77	15.9791
).))))).	chr17:47841168-47841485(-)$1	1	37	45	16.1875
(...))))	chr3:49050061-49050364(+)$1	1	279	287	16.1875
.).)))).	chr17:7476712-7476959(+)$1	1	62	70	15.2499
..))))))	chr3:49049827-49050107(+)$1	1	124	132	16.1875
((((....	chr5:179248427-179248714(+)$1	1	197	205	15.3541
((..((((	chr16:85646881-85647134(+)$1	1	140	148	15.5625
((((((((	chr19:2270539-2270774(+)$1	1	61	69	16.0833
(((.(.((	chr1:153615728-153615942(+)$1	1	72	80	16.1875
))))))))	chr6:28872016-28872413(-)$1	1	328	336	15.7708
))))...(	chr8:145693794-145694067(+)$1	1	113	121	20.0416
.).))..(	chr9:101558485-101558795(-)$1	1	24	32	16.1875
(..(((((	chr19:10221604-10221954(+)$1	1	159	167	16.0833
((((((((	chr16:1835478-1835792(+)$1	1	168	176	15.7708
))))))))	chr19:2270369-2270619(+)$1	1	91	99	16.1875
).))((((	chr11:114310160-114310499(+)$1	1	248	256	16.1875
((((....	chr19:1592468-1592843(-)$1	1	74	82	20.0416
))))))))	chr19:2270478-2270739(+)$1	1	122	130	16.0833
))))))))	chr19:10222193-10222511(+)$1	1	113	121	15.7708
)).)))))	chr16:88714409-88714793(-)$1	1	366	374	20.0416
(.....))	chr19:10407012-10407356(+)$1	1	24	32	16.3958
.))).).)	chr5:138629678-138629996(+)$1	1	155	163	20.0416
))))))))	chr21:35445786-35446180(+)$1	1	382	390	16.3958
((((((((	chr12:132414114-132414442(+)$1	1	122	130	20.0416
...)))).	chr2:54197715-54197990(-)$1	1	245	253	15.5625
)))).)))	chr1:153615710-153615928(+)$1	1	90	98	16.1875
))..))))	chr7:151216370-151216699(-)$1	1	264	272	20.0416
((((((((	chr19:2444260-2444555(-)$1	1	233	241	15.3541
)))))))(	chr18:3451868-3452127(+)$1	1	168	176	16.1875
((((.(.(	chr9:139565298-139565563(+)$1	1	55	63	15.7708
).))).))	chr15:80214902-80215226(-)$1	1	122	130	15.5625
))))).).	chr22:45724171-45724448(+)$1	1	105	113	15.7708
((..((((	chr22:50016987-50017311(-)$1	1	158	166	15.4583
.)))))).	chr19:10406946-10407212(+)$1	1	90	98	16.3958
((((....	chr19:2270419-2270678(+)$1	1	41	49	16.1875
))))((((	chr1:228329186-228329462(+)$1	1	43	51	16.0833
((((((((	chr19:10406896-10407146(+)$1	1	140	148	16.3958

#PSSM
G : 0.64	g : 0.18	C : 0.06	U : 0.06	A : 0.04	
G : 0.75	g : 0.20	C : 0.02	U : 0.02	
G : 0.72	g : 0.20	C : 0.04	A : 0.02	
C : 0.72	c : 0.18	U : 0.04	u : 0.02	A : 0.02	
G : 0.72	g : 0.18	U : 0.04	u : 0.02	C : 0.02	
G : 0.62	g : 0.20	U : 0.06	A : 0.06	C : 0.04	
G : 0.70	g : 0.12	c : 0.08	A : 0.04	C : 0.02	U : 0.02	
G : 0.77	g : 0.20	C : 0.02	

#score	807.4166666666667
#seq	48
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_transcript_m1_run2.nuc.txt

#NT
GCU	chr17:4575257-4575595(-)$1	338	262	265	9.0000
GCU	chrM:11318-11525(+)$1	207	33	36	9.0000
GCU	chr2:27606717-27606955(-)$1	238	18	21	9.0000
GCU	chr12:133367744-133367980(-)$1	236	23	26	9.0000
GCU	chr19:2121153-2121401(-)$1	248	50	53	9.0000
GCU	chr5:34938916-34939215(+)$1	299	11	14	9.0000
GCU	chr19:2193643-2193875(+)$1	232	9	12	9.0000
gcu	chr1:186295153-186295446(-)$1	293	196	199	9.0000
GCU	chr3:15064606-15064870(+)$1	264	99	102	9.0000
GCU	chr7:98997833-98998055(-)$1	222	31	34	9.0000
gcu	chrX:152954396-152954647(+)$1	251	37	40	9.0000
GCU	chr7:1056501-1056739(-)$1	238	16	19	9.0000
GCU	chr16:89038164-89038408(-)$1	244	5	8	9.0000
GCU	chr18:47811864-47812128(-)$1	264	25	28	9.0000
GCU	chr1:70710372-70710598(+)$1	226	181	184	9.0000
gcu	chr15:29088009-29088233(+)$1	224	0	3	9.0000
GCU	chr22:49979562-49979788(-)$1	226	17	20	9.0000
GCU	chr1:19479701-19479909(-)$1	208	38	41	9.0000
GCU	chr11:58377260-58377533(+)$1	273	101	104	9.0000
GCU	chr15:91524903-91525201(-)$1	298	88	91	9.0000
GCU	chr19:805759-806034(+)$1	275	34	37	9.0000
gcu	chr7:1056012-1056240(-)$1	228	2	5	9.0000
GCU	chr8:38854436-38854722(+)$1	286	10	13	9.0000
GCU	chr19:8528418-8528666(+)$1	248	95	98	9.0000
GCU	chr12:7025912-7026148(+)$1	236	112	115	9.0000
GCU	chr2:3243849-3244117(-)$1	268	15	18	9.0000
GCU	chr2:97532210-97532443(-)$1	233	10	13	9.0000
GCU	chr10:120809225-120809499(-)$1	274	48	51	9.0000
GCU	chr20:62624689-62624934(+)$1	245	18	21	9.0000
GCU	chr3:128211706-128211984(+)$1	278	86	89	9.0000
GCU	chr17:79661854-79662126(+)$1	272	8	11	9.0000
gcu	chr7:1056171-1056416(-)$1	245	1	4	9.0000
GCU	chr4:899058-899326(-)$1	268	151	154	9.0000
GCU	chr1:26595953-26596202(+)$1	249	26	29	9.0000
GCU	chr3:37366151-37366436(+)$1	285	177	180	9.0000
GCU	chr3:128200235-128200498(-)$1	263	3	6	9.0000
GCU	chrX:53436297-53436531(-)$1	234	114	117	9.0000
GCU	chr1:214813737-214813983(+)$1	246	38	41	9.0000
GCU	chr1:2164874-2165099(+)$1	225	3	6	9.0000
GCU	chr11:1994052-1994329(+)$1	277	8	11	9.0000
GCU	chrM:516-745(+)$1	229	11	14	9.0000
gcu	chr17:34943333-34943627(+)$1	294	12	15	9.0000
GCU	chr12:6711510-6711744(-)$1	234	34	37	9.0000
gcu	chr17:80808091-80808352(+)$1	261	1	4	9.0000
GCU	chr11:63763901-63764155(+)$1	254	26	29	9.0000
GCU	chr19:11559265-11559542(+)$1	277	2	5	9.0000
GCU	chr17:80723264-80723559(+)$1	295	4	7	9.0000
GCU	chr16:85678684-85678951(+)$1	267	104	107	9.0000
GCU	chr22:21347253-21347532(+)$1	279	22	25	9.0000
GCU	chr16:595612-595850(+)$1	238	2	5	9.0000
GCU	chr16:85669163-85669404(+)$1	241	1	4	9.0000
GCU	chr21:47831093-47831378(+)$1	285	41	44	9.0000
GCU	chr17:61895477-61895743(+)$1	266	128	131	9.0000
GCU	chrM:4200-4430(+)$1	230	111	114	9.0000
GCU	chr1:144994488-144994704(-)$1	216	41	44	9.0000
GCU	chr7:1063697-1063977(-)$1	280	8	11	9.0000
GCU	chr19:1035860-1036110(+)$1	250	86	89	9.0000
GCU	chr1:245026666-245026896(-)$1	230	146	149	9.0000
GCU	chr19:2270856-2271070(+)$1	214	93	96	9.0000
GCU	chr16:89971253-89971533(+)$1	280	23	26	9.0000
GCU	chr16:85668743-85669018(+)$1	275	47	50	9.0000
GCU	chrX:53588643-53588918(-)$1	275	79	82	9.0000
gcu	chr7:6460792-6461067(-)$1	275	13	16	9.0000
GCU	chr7:6461254-6461493(-)$1	239	24	27	9.0000
GCU	chr17:80802840-80803089(+)$1	249	35	38	9.0000
gcu	chr7:1055501-1055823(-)$1	322	7	10	9.0000
GCU	chr16:85679177-85679406(+)$1	229	36	39	9.0000
GCU	chr3:180325398-180325690(+)$1	292	13	16	9.0000
GCU	chr1:227164014-227164342(+)$1	328	9	12	9.0000
GCU	chr5:96076871-96077142(+)$1	271	26	29	9.0000
GCU	chr1:59248923-59249177(-)$1	254	80	83	9.0000
GCU	chr5:140699001-140699232(-)$1	231	127	130	9.0000
GCU	chr17:4796893-4797136(+)$1	243	75	78	9.0000
GCU	chr16:89028383-89028635(-)$1	252	18	21	9.0000
GCU	chr11:66366545-66366825(+)$1	280	118	121	9.0000
GCU	chr7:1889717-1889955(-)$1	238	33	36	9.0000
GCU	chr5:150425314-150425580(-)$1	266	47	50	9.0000
GCU	chr21:45739510-45739756(+)$1	246	40	43	9.0000
gcu	chr2:135875333-135875589(+)$1	256	1	4	9.0000
GCU	chr5:138700152-138700374(+)$1	222	70	73	9.0000
gcu	chr20:25836829-25837069(-)$1	240	6	9	9.0000
GCU	chr1:2164978-2165237(+)$1	259	2	5	9.0000
GCU	chr16:89967386-89967705(+)$1	319	83	86	9.0000
GCU	chr4:719084-719366(+)$1	282	13	16	9.0000
GCU	chr7:6461569-6461799(-)$1	230	15	18	9.0000
GCU	chr16:87890479-87890741(-)$1	262	39	42	9.0000
GCU	chr7:77378746-77379040(+)$1	294	129	132	9.0000
GCU	chrX:152954870-152955129(+)$1	259	27	30	9.0000
GCU	chr1:1650717-1650995(-)$1	278	49	52	9.0000
GCU	chr20:60897732-60897973(-)$1	241	12	15	9.0000
GCU	chr11:118919443-118919682(-)$1	239	50	53	9.0000
GCU	chr7:99935715-99935988(+)$1	273	37	40	9.0000
GCU	chr9:131023637-131023898(-)$1	261	184	187	9.0000
GCU	chr11:6566343-6566620(+)$1	277	2	5	9.0000
GCU	chr6:131276174-131276553(-)$1	379	206	209	9.0000
gcu	chr17:80808327-80808581(+)$1	254	0	3	9.0000
GCU	chr1:2323513-2323799(+)$1	286	90	93	9.0000
GCU	chr14:23549129-23549418(-)$1	289	39	42	9.0000
GCU	chr14:56078636-56078964(+)$1	328	207	210	9.0000

#otherMatches

#Struct PSSM
EEE	chr2:232326506-232326771(-)$1	265	6	9	9.0000
YCC	chr17:4575257-4575595(-)$1	338	262	265	9.0000
ddd	chrM:11318-11525(+)$1	207	33	36	9.0000
ccc	chr2:27606717-27606955(-)$1	238	18	21	9.0000
hhh	chr12:133367744-133367980(-)$1	236	23	26	9.0000
B{E	chr19:2121153-2121401(-)$1	248	50	53	9.0000
FFF	chr5:34938916-34939215(+)$1	299	11	14	9.0000
ccc	chr19:2193643-2193875(+)$1	232	9	12	9.0000
!cc	chr1:186295153-186295446(-)$1	293	196	199	9.0000
:dd	chr3:15064606-15064870(+)$1	264	99	102	9.0000
c[b	chr7:98997833-98998055(-)$1	222	31	34	9.0000
fff	chrX:152954396-152954647(+)$1	251	37	40	9.0000
c[c	chr7:1056501-1056739(-)$1	238	16	19	9.0000
KDD	chr16:89038164-89038408(-)$1	244	5	8	9.0000
:::	chr18:47811864-47812128(-)$1	264	25	28	9.0000
ccc	chr1:70710372-70710598(+)$1	226	181	184	9.0000
bb)	chr15:29088009-29088233(+)$1	224	0	3	9.0000
egg	chr22:49979562-49979788(-)$1	226	17	20	9.0000
eee	chr1:19479701-19479909(-)$1	208	38	41	9.0000
hhh	chr11:58377260-58377533(+)$1	273	101	104	9.0000
bb[	chr15:91524903-91525201(-)$1	298	88	91	9.0000
FFF	chr19:805759-806034(+)$1	275	34	37	9.0000
EEE	chr7:1056012-1056240(-)$1	228	2	5	9.0000
===	chr8:38854436-38854722(+)$1	286	10	13	9.0000
eee	chr19:8528418-8528666(+)$1	248	95	98	9.0000
6gg	chr12:7025912-7026148(+)$1	236	112	115	9.0000
bb[	chr2:3243849-3244117(-)$1	268	15	18	9.0000
iii	chr2:97532210-97532443(-)$1	233	10	13	9.0000
BBc	chr10:120809225-120809499(-)$1	274	48	51	9.0000
bb[	chr20:62624689-62624934(+)$1	245	18	21	9.0000
xxx	chr3:128211706-128211984(+)$1	278	86	89	9.0000
nnn	chr17:79661854-79662126(+)$1	272	8	11	9.0000
BB{	chr7:1056171-1056416(-)$1	245	1	4	9.0000
[cc	chr4:899058-899326(-)$1	268	151	154	9.0000
BKK	chr1:26595953-26596202(+)$1	249	26	29	9.0000
c]c	chr3:37366151-37366436(+)$1	285	177	180	9.0000
CCC	chr3:128200235-128200498(-)$1	263	3	6	9.0000
ccc	chrX:53436297-53436531(-)$1	234	114	117	9.0000
KGG	chr1:214813737-214813983(+)$1	246	38	41	9.0000
bb"	chr1:2164874-2165099(+)$1	225	3	6	9.0000
fff	chr11:1994052-1994329(+)$1	277	8	11	9.0000
CCC	chrM:516-745(+)$1	229	11	14	9.0000
bb!	chr17:34943333-34943627(+)$1	294	12	15	9.0000
ccc	chr12:6711510-6711744(-)$1	234	34	37	9.0000
bb[	chr17:80808091-80808352(+)$1	261	1	4	9.0000
nnn	chr11:63763901-63764155(+)$1	254	26	29	9.0000
{HH	chr19:11559265-11559542(+)$1	277	2	5	9.0000
:::	chr17:80723264-80723559(+)$1	295	4	7	9.0000
eee	chr16:85678684-85678951(+)$1	267	104	107	9.0000
fff	chr22:21347253-21347532(+)$1	279	22	25	9.0000
:EE	chr16:595612-595850(+)$1	238	2	5	9.0000
HHH	chr16:85669163-85669404(+)$1	241	1	4	9.0000
fff	chr21:47831093-47831378(+)$1	285	41	44	9.0000
fff	chr17:61895477-61895743(+)$1	266	128	131	9.0000
D::	chrM:4200-4430(+)$1	230	111	114	9.0000
bbe	chr1:144994488-144994704(-)$1	216	41	44	9.0000
e""	chr7:1063697-1063977(-)$1	280	8	11	9.0000
^^^	chr19:1035860-1036110(+)$1	250	86	89	9.0000
mmm	chr1:245026666-245026896(-)$1	230	146	149	9.0000
GGG	chr19:2270856-2271070(+)$1	214	93	96	9.0000
DDD	chr16:89971253-89971533(+)$1	280	23	26	9.0000
ddd	chr16:85668743-85669018(+)$1	275	47	50	9.0000
EEE	chrX:53588643-53588918(-)$1	275	79	82	9.0000
dd[	chr7:6460792-6461067(-)$1	275	13	16	9.0000
HHH	chr7:6461254-6461493(-)$1	239	24	27	9.0000
[gg	chr17:80802840-80803089(+)$1	249	35	38	9.0000
[bb	chr7:1055501-1055823(-)$1	322	7	10	9.0000
ddb	chr16:85679177-85679406(+)$1	229	36	39	9.0000
iii	chr3:180325398-180325690(+)$1	292	13	16	9.0000
gge	chr1:227164014-227164342(+)$1	328	9	12	9.0000
CKK	chr5:96076871-96077142(+)$1	271	26	29	9.0000
eeh	chr1:59248923-59249177(-)$1	254	80	83	9.0000
iii	chr5:140699001-140699232(-)$1	231	127	130	9.0000
DDD	chr17:4796893-4797136(+)$1	243	75	78	9.0000
hhh	chr16:89028383-89028635(-)$1	252	18	21	9.0000
bb]	chr11:66366545-66366825(+)$1	280	118	121	9.0000
g::	chr7:1889717-1889955(-)$1	238	33	36	9.0000
ccc	chr5:150425314-150425580(-)$1	266	47	50	9.0000
rbb	chr21:45739510-45739756(+)$1	246	40	43	9.0000
DDD	chr2:135875333-135875589(+)$1	256	1	4	9.0000
"""	chr5:138700152-138700374(+)$1	222	70	73	9.0000
ggg	chr20:25836829-25837069(-)$1	240	6	9	9.0000
[cc	chr1:2164978-2165237(+)$1	259	2	5	9.0000
bb]	chr16:89967386-89967705(+)$1	319	83	86	9.0000
HHM	chr4:719084-719366(+)$1	282	13	16	9.0000
JJJ	chr7:6461569-6461799(-)$1	230	15	18	9.0000
eee	chr16:87890479-87890741(-)$1	262	39	42	9.0000
d33	chr7:77378746-77379040(+)$1	294	129	132	9.0000
DDD	chrX:152954870-152955129(+)$1	259	27	30	9.0000
fff	chr1:1650717-1650995(-)$1	278	49	52	9.0000
FFF	chr20:60897732-60897973(-)$1	241	12	15	9.0000
cnn	chr11:118919443-118919682(-)$1	239	50	53	9.0000
eee	chr7:99935715-99935988(+)$1	273	37	40	9.0000
dcc	chr9:131023637-131023898(-)$1	261	184	187	9.0000
:::	chr11:6566343-6566620(+)$1	277	2	5	9.0000
ccc	chr6:131276174-131276553(-)$1	379	206	209	9.0000
ddd	chr17:80808327-80808581(+)$1	254	0	3	9.0000
GGG	chr1:2323513-2323799(+)$1	286	90	93	9.0000
ddd	chr14:23549129-23549418(-)$1	289	39	42	9.0000
eee	chr14:56078636-56078964(+)$1	328	207	210	9.0000

#DB
(((	chr2:232326506-232326771(-)$1	1	6	9	9.0000
.))	chr17:4575257-4575595(-)$1	1	262	265	9.0000
(((	chrM:11318-11525(+)$1	1	33	36	9.0000
)))	chr2:27606717-27606955(-)$1	1	18	21	9.0000
(((	chr12:133367744-133367980(-)$1	1	23	26	9.0000
(.(	chr19:2121153-2121401(-)$1	1	50	53	9.0000
(((	chr5:34938916-34939215(+)$1	1	11	14	9.0000
(((	chr19:2193643-2193875(+)$1	1	9	12	9.0000
.((	chr1:186295153-186295446(-)$1	1	196	199	9.0000
.((	chr3:15064606-15064870(+)$1	1	99	102	9.0000
(.(	chr7:98997833-98998055(-)$1	1	31	34	9.0000
(((	chrX:152954396-152954647(+)$1	1	37	40	9.0000
(.(	chr7:1056501-1056739(-)$1	1	16	19	9.0000
.((	chr16:89038164-89038408(-)$1	1	5	8	9.0000
...	chr18:47811864-47812128(-)$1	1	25	28	9.0000
(((	chr1:70710372-70710598(+)$1	1	181	184	9.0000
((.	chr15:29088009-29088233(+)$1	1	0	3	9.0000
(((	chr22:49979562-49979788(-)$1	1	17	20	9.0000
)))	chr1:19479701-19479909(-)$1	1	38	41	9.0000
(((	chr11:58377260-58377533(+)$1	1	101	104	9.0000
((.	chr15:91524903-91525201(-)$1	1	88	91	9.0000
(((	chr19:805759-806034(+)$1	1	34	37	9.0000
(((	chr7:1056012-1056240(-)$1	1	2	5	9.0000
(((	chr8:38854436-38854722(+)$1	1	10	13	9.0000
)))	chr19:8528418-8528666(+)$1	1	95	98	9.0000
.))	chr12:7025912-7026148(+)$1	1	112	115	9.0000
((.	chr2:3243849-3244117(-)$1	1	15	18	9.0000
(((	chr2:97532210-97532443(-)$1	1	10	13	9.0000
(((	chr10:120809225-120809499(-)$1	1	48	51	9.0000
((.	chr20:62624689-62624934(+)$1	1	18	21	9.0000
...	chr3:128211706-128211984(+)$1	1	86	89	9.0000
...	chr17:79661854-79662126(+)$1	1	8	11	9.0000
((.	chr7:1056171-1056416(-)$1	1	1	4	9.0000
.((	chr4:899058-899326(-)$1	1	151	154	9.0000
(..	chr1:26595953-26596202(+)$1	1	26	29	9.0000
).)	chr3:37366151-37366436(+)$1	1	177	180	9.0000
(((	chr3:128200235-128200498(-)$1	1	3	6	9.0000
)))	chrX:53436297-53436531(-)$1	1	114	117	9.0000
.((	chr1:214813737-214813983(+)$1	1	38	41	9.0000
((.	chr1:2164874-2165099(+)$1	1	3	6	9.0000
(((	chr11:1994052-1994329(+)$1	1	8	11	9.0000
(((	chrM:516-745(+)$1	1	11	14	9.0000
((.	chr17:34943333-34943627(+)$1	1	12	15	9.0000
)))	chr12:6711510-6711744(-)$1	1	34	37	9.0000
((.	chr17:80808091-80808352(+)$1	1	1	4	9.0000
...	chr11:63763901-63764155(+)$1	1	26	29	9.0000
.((	chr19:11559265-11559542(+)$1	1	2	5	9.0000
...	chr17:80723264-80723559(+)$1	1	4	7	9.0000
)))	chr16:85678684-85678951(+)$1	1	104	107	9.0000
(((	chr22:21347253-21347532(+)$1	1	22	25	9.0000
.((	chr16:595612-595850(+)$1	1	2	5	9.0000
(((	chr16:85669163-85669404(+)$1	1	1	4	9.0000
)))	chr21:47831093-47831378(+)$1	1	41	44	9.0000
)))	chr17:61895477-61895743(+)$1	1	128	131	9.0000
)..	chrM:4200-4430(+)$1	1	111	114	9.0000
(((	chr1:144994488-144994704(-)$1	1	41	44	9.0000
(..	chr7:1063697-1063977(-)$1	1	8	11	9.0000
...	chr19:1035860-1036110(+)$1	1	86	89	9.0000
...	chr1:245026666-245026896(-)$1	1	146	149	9.0000
)))	chr19:2270856-2271070(+)$1	1	93	96	9.0000
(((	chr16:89971253-89971533(+)$1	1	23	26	9.0000
(((	chr16:85668743-85669018(+)$1	1	47	50	9.0000
(((	chrX:53588643-53588918(-)$1	1	79	82	9.0000
((.	chr7:6460792-6461067(-)$1	1	13	16	9.0000
(((	chr7:6461254-6461493(-)$1	1	24	27	9.0000
.((	chr17:80802840-80803089(+)$1	1	35	38	9.0000
.((	chr7:1055501-1055823(-)$1	1	7	10	9.0000
)))	chr16:85679177-85679406(+)$1	1	36	39	9.0000
(((	chr3:180325398-180325690(+)$1	1	13	16	9.0000
(((	chr1:227164014-227164342(+)$1	1	9	12	9.0000
(..	chr5:96076871-96077142(+)$1	1	26	29	9.0000
))(	chr1:59248923-59249177(-)$1	1	80	83	9.0000
(((	chr5:140699001-140699232(-)$1	1	127	130	9.0000
(((	chr17:4796893-4797136(+)$1	1	75	78	9.0000
(((	chr16:89028383-89028635(-)$1	1	18	21	9.0000
)).	chr11:66366545-66366825(+)$1	1	118	121	9.0000
)..	chr7:1889717-1889955(-)$1	1	33	36	9.0000
)))	chr5:150425314-150425580(-)$1	1	47	50	9.0000
.))	chr21:45739510-45739756(+)$1	1	40	43	9.0000
(((	chr2:135875333-135875589(+)$1	1	1	4	9.0000
...	chr5:138700152-138700374(+)$1	1	70	73	9.0000
(((	chr20:25836829-25837069(-)$1	1	6	9	9.0000
.((	chr1:2164978-2165237(+)$1	1	2	5	9.0000
)).	chr16:89967386-89967705(+)$1	1	83	86	9.0000
((.	chr4:719084-719366(+)$1	1	13	16	9.0000
(((	chr7:6461569-6461799(-)$1	1	15	18	9.0000
)))	chr16:87890479-87890741(-)$1	1	39	42	9.0000
)..	chr7:77378746-77379040(+)$1	1	129	132	9.0000
(((	chrX:152954870-152955129(+)$1	1	27	30	9.0000
(((	chr1:1650717-1650995(-)$1	1	49	52	9.0000
(((	chr20:60897732-60897973(-)$1	1	12	15	9.0000
(..	chr11:118919443-118919682(-)$1	1	50	53	9.0000
(((	chr7:99935715-99935988(+)$1	1	37	40	9.0000
)))	chr9:131023637-131023898(-)$1	1	184	187	9.0000
...	chr11:6566343-6566620(+)$1	1	2	5	9.0000
(((	chr6:131276174-131276553(-)$1	1	206	209	9.0000
(((	chr17:80808327-80808581(+)$1	1	0	3	9.0000
(((	chr1:2323513-2323799(+)$1	1	90	93	9.0000
)))	chr14:23549129-23549418(-)$1	1	39	42	9.0000
(((	chr14:56078636-56078964(+)$1	1	207	210	9.0000

#PSSM
G : 0.88	g : 0.11	
C : 0.88	c : 0.11	
U : 0.88	u : 0.11	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_UTR_m2_run2.nuc.txt

#NT
GACCUGG	chr5:140908638-140908867(-)$1	229	96	103	13.2388
GCCCCGG	chr17:38137102-38137371(+)$1	269	78	85	13.8358
GCCCCGG	chrX:153588501-153588709(-)$1	208	46	53	13.8358
GCCCUGG	chr9:134353043-134353327(+)$1	284	154	161	16.9701
GCCCGGG	chr12:124196920-124197193(+)$1	273	103	110	13.6119
GGCCUGG	chrX:153587639-153587874(-)$1	235	57	64	13.3880
GCGCUGG	chr19:39138219-39138532(+)$1	313	227	234	12.7164
ccccugg	chr19:59056020-59056244(+)$1	224	77	84	13.0149
gccccgg	chr16:23847338-23847591(+)$1	253	49	56	13.8358
GCCCUGC	chr12:56498319-56498610(+)$1	291	11	18	13.1641
GUCCUGG	chrX:153580650-153580898(-)$1	248	6	13	13.1641
GCCCCGG	chr19:7706595-7706840(+)$1	245	230	237	13.8358
GGCCUGG	chr10:120840131-120840426(-)$1	295	50	57	13.3880
GCCCUGG	chrX:153579238-153579465(-)$1	227	9	16	16.9701
GGCCUGG	chr1:62902820-62903104(+)$1	284	259	266	13.3880
GCCCGGG	chr7:72936337-72936645(-)$1	308	40	47	13.6119
gccccgg	chr11:70116733-70117017(+)$1	284	149	156	13.8358
GCCCAGG	chr7:2394873-2395150(+)$1	277	43	50	13.5373
GCCCUGU	chr1:12557483-12557772(+)$1	289	225	232	12.7164
GCCCUGG	chr22:22893255-22893507(-)$1	252	89	96	16.9701
ccccugg	chr17:57697252-57697508(+)$1	256	56	63	13.0149
GCCCUGG	chr21:45719861-45720167(+)$1	306	263	270	16.9701
GCCCUGG	chrX:153590510-153590714(-)$1	204	84	91	16.9701
GCCCUGG	chr11:11863490-11863754(+)$1	264	67	74	16.9701
GCCCAGG	chrX:153587258-153587462(-)$1	204	12	19	13.5373
gcccggg	chr2:102314252-102314514(+)$1	262	15	22	13.6119
GACCUGG	chr7:2419023-2419247(+)$1	224	107	114	13.2388
GCCCUGC	chrX:153588168-153588373(-)$1	205	23	30	13.1641
CCCCUGG	chr16:58633136-58633390(-)$1	254	1	8	13.0149
GCCCUGC	chr11:61067532-61067776(-)$1	244	212	219	13.1641
GCCCGGG	chr7:23145304-23145785(+)$1	481	106	113	13.6119
GUCCUGG	chr16:89556802-89557063(-)$1	261	83	90	13.1641
UCCCUGG	chr19:48639202-48639485(-)$1	283	80	87	12.7910
GCCCCGG	chr3:41240891-41241197(+)$1	306	138	145	13.8358
GGCCUGG	chr11:62303928-62304139(-)$1	211	2	9	13.3880
GCCCUGC	chr14:31676347-31676605(-)$1	258	59	66	13.1641
GCCCUGG	chr3:47893460-47893737(-)$1	277	135	142	16.9701
GCCCUGG	chrX:153581967-153582195(-)$1	228	17	24	16.9701
GCCCUGG	chrX:40945135-40945390(+)$1	255	194	201	16.9701
GCCCUGG	chrX:153590565-153590800(-)$1	235	170	177	16.9701
GACCUGG	chr3:47882416-47882657(+)$1	241	113	120	13.2388
ACCCUGG	chr7:98609856-98610136(+)$1	280	50	57	12.7910
GUCCUGG	chr1:36621780-36622067(+)$1	287	172	179	13.1641
GCCCUGG	chr3:184040919-184041126(+)$1	207	193	200	16.9701
GCCCUGC	chr2:55646619-55646905(-)$1	286	129	136	13.1641
CCCCUGG	chr3:184052843-184053091(+)$1	248	58	65	13.0149
GACCUGG	chr17:7811116-7811396(+)$1	280	41	48	13.2388
GCCCUGG	chr3:184041092-184041348(+)$1	256	20	27	16.9701
GCCCGGG	chrX:153585789-153586060(-)$1	271	16	23	13.6119
GCCCUGG	chr19:8550821-8551134(+)$1	313	285	292	16.9701
GCCCAGG	chrX:153579871-153580101(-)$1	230	31	38	13.5373
GCUCUGG	chr16:3767362-3767623(-)$1	261	98	105	12.5671
GCGCUGG	chrX:153585860-153586078(-)$1	218	3	10	12.7164
ggccugg	chr4:1857685-1857975(-)$1	290	78	85	13.3880
GGCCUGG	chr2:102314314-102314586(+)$1	272	151	158	13.3880
GCCCUGC	chr2:44222877-44223106(-)$1	229	26	33	13.1641
GCCCUGA	chr19:10792641-10792891(+)$1	250	59	66	12.7164
GCCCCGG	chr19:1206013-1206269(+)$1	256	135	142	13.8358
GCGCUGG	chr22:19711754-19712026(+)$1	272	59	66	12.7164
GCCCUGC	chr17:80441510-80441752(+)$1	242	195	202	13.1641
GCGCUGG	chr17:8533870-8534143(-)$1	273	113	120	12.7164
GCCCAGG	chr19:14554186-14554420(+)$1	234	12	19	13.5373
GCCCCGG	chr8:98656578-98656854(+)$1	276	115	122	13.8358
ACCCUGG	chr12:67663184-67663476(+)$1	292	194	201	12.7910
gcucugG	chr12:116714764-116715052(-)$1	288	88	95	12.5671
UCCCUGG	chr7:39989889-39990175(+)$1	286	141	148	12.7910

#otherMatches

#Struct PSSM
JJJJJJJ	chr17:35306245-35306558(+)$1	313	195	202	13.0149
b22ffff	chr5:140908638-140908867(-)$1	229	96	103	13.2388
ffmmmmf	chr17:38137102-38137371(+)$1	269	78	85	13.8358
dddllld	chrX:153588501-153588709(-)$1	208	46	53	13.8358
eeeeegg	chr9:134353043-134353327(+)$1	284	154	161	16.9701
ddd22ff	chr12:124196920-124197193(+)$1	273	103	110	13.6119
a[fffff	chrX:153587639-153587874(-)$1	235	57	64	13.3880
}EEEEE}	chr19:39138219-39138532(+)$1	313	227	234	12.7164
))ggggg	chr19:59056020-59056244(+)$1	224	77	84	13.0149
=======	chr16:23847338-23847591(+)$1	253	49	56	13.8358
CCDDDDB	chr12:56498319-56498610(+)$1	291	11	18	13.1641
:ddddff	chrX:153580650-153580898(-)$1	248	6	13	13.1641
CCYYCCC	chr19:7706595-7706840(+)$1	245	230	237	13.8358
eee:::f	chr10:120840131-120840426(-)$1	295	50	57	13.3880
=======	chrX:153579238-153579465(-)$1	227	9	16	16.9701
hhhhhhh	chr1:62902820-62903104(+)$1	284	259	266	13.3880
CLLLFFF	chr7:72936337-72936645(-)$1	308	40	47	13.6119
iiii:FF	chr11:70116733-70117017(+)$1	284	149	156	13.8358
eee::::	chr7:2394873-2395150(+)$1	277	43	50	13.5373
bb:HHHH	chr1:12557483-12557772(+)$1	289	225	232	12.7164
EEELLLI	chr22:22893255-22893507(-)$1	252	89	96	16.9701
e####ee	chr17:57697252-57697508(+)$1	256	56	63	13.0149
=====:D	chr21:45719861-45720167(+)$1	306	263	270	16.9701
ffdddd[	chrX:153590510-153590714(-)$1	204	84	91	16.9701
g[ccc[d	chr11:11863490-11863754(+)$1	264	67	74	16.9701
{CCC{CC	chrX:153587258-153587462(-)$1	204	12	19	13.5373
eeebbff	chr2:102314252-102314514(+)$1	262	15	22	13.6119
nndddd:	chr7:2419023-2419247(+)$1	224	107	114	13.2388
ffffff:	chrX:153588168-153588373(-)$1	205	23	30	13.1641
:::ffff	chr16:58633136-58633390(-)$1	254	1	8	13.0149
eeeee]g	chr11:61067532-61067776(-)$1	244	212	219	13.1641
=======	chr7:23145304-23145785(+)$1	481	106	113	13.6119
cc333ff	chr16:89556802-89557063(-)$1	261	83	90	13.1641
gggg333	chr19:48639202-48639485(-)$1	283	80	87	12.7910
mmmmddd	chr3:41240891-41241197(+)$1	306	138	145	13.8358
GGGGGgg	chr11:62303928-62304139(-)$1	211	2	9	13.3880
HHHHHCC	chr14:31676347-31676605(-)$1	258	59	66	13.1641
cccnnnn	chr3:47893460-47893737(-)$1	277	135	142	16.9701
EGGGGGG	chrX:153581967-153582195(-)$1	228	17	24	16.9701
dddd]bb	chrX:40945135-40945390(+)$1	255	194	201	16.9701
ff::FFF	chrX:153590565-153590800(-)$1	235	170	177	16.9701
h4444ff	chr3:47882416-47882657(+)$1	241	113	120	13.2388
:bb[===	chr7:98609856-98610136(+)$1	280	50	57	12.7910
d]ggggg	chr1:36621780-36622067(+)$1	287	172	179	13.1641
reeeee2	chr3:184040919-184041126(+)$1	207	193	200	16.9701
JJJJJJJ	chr2:55646619-55646905(-)$1	286	129	136	13.1641
ddd!!hh	chr3:184052843-184053091(+)$1	248	58	65	13.0149
B}CCCBB	chr17:7811116-7811396(+)$1	280	41	48	13.2388
nddddbb	chr3:184041092-184041348(+)$1	256	20	27	16.9701
ggggggg	chrX:153585789-153586060(-)$1	271	16	23	13.6119
EEEE:::	chr19:8550821-8551134(+)$1	313	285	292	16.9701
GGGGGGG	chrX:153579871-153580101(-)$1	230	31	38	13.5373
cc22fff	chr16:3767362-3767623(-)$1	261	98	105	12.5671
d####ee	chrX:153585860-153586078(-)$1	218	3	10	12.7164
eeellle	chr4:1857685-1857975(-)$1	290	78	85	13.3880
ccc4444	chr2:102314314-102314586(+)$1	272	151	158	13.3880
hhh[ccc	chr2:44222877-44223106(-)$1	229	26	33	13.1641
ffffff"	chr19:10792641-10792891(+)$1	250	59	66	12.7164
gggbb[f	chr19:1206013-1206269(+)$1	256	135	142	13.8358
eeee[ff	chr22:19711754-19712026(+)$1	272	59	66	12.7164
hhhhhh"	chr17:80441510-80441752(+)$1	242	195	202	13.1641
gggggg3	chr17:8533870-8534143(-)$1	273	113	120	12.7164
dddd333	chr19:14554186-14554420(+)$1	234	12	19	13.5373
dd333bb	chr8:98656578-98656854(+)$1	276	115	122	13.8358
[addddm	chr12:67663184-67663476(+)$1	292	194	201	12.7910
f[bb[a[	chr12:116714764-116715052(-)$1	288	88	95	12.5671
fff:eee	chr7:39989889-39990175(+)$1	286	141	148	12.7910

#DB
)))))))	chr17:35306245-35306558(+)$1	1	195	202	13.0149
)..))))	chr5:140908638-140908867(-)$1	1	96	103	13.2388
((....)	chr17:38137102-38137371(+)$1	1	78	85	13.8358
(((...)	chrX:153588501-153588709(-)$1	1	46	53	13.8358
(((((((	chr9:134353043-134353327(+)$1	1	154	161	16.9701
)))..))	chr12:124196920-124197193(+)$1	1	103	110	13.6119
(.(((((	chrX:153587639-153587874(-)$1	1	57	64	13.3880
.))))).	chr19:39138219-39138532(+)$1	1	227	234	12.7164
..(((((	chr19:59056020-59056244(+)$1	1	77	84	13.0149
(((((((	chr16:23847338-23847591(+)$1	1	49	56	13.8358
(((((((	chr12:56498319-56498610(+)$1	1	11	18	13.1641
.((((((	chrX:153580650-153580898(-)$1	1	6	13	13.1641
))..)))	chr19:7706595-7706840(+)$1	1	230	237	13.8358
)))...(	chr10:120840131-120840426(-)$1	1	50	57	13.3880
(((((((	chrX:153579238-153579465(-)$1	1	9	16	16.9701
)))))))	chr1:62902820-62903104(+)$1	1	259	266	13.3880
(...(((	chr7:72936337-72936645(-)$1	1	40	47	13.6119
)))).))	chr11:70116733-70117017(+)$1	1	149	156	13.8358
)))....	chr7:2394873-2395150(+)$1	1	43	50	13.5373
)).))))	chr1:12557483-12557772(+)$1	1	225	232	12.7164
(((...(	chr22:22893255-22893507(-)$1	1	89	96	16.9701
(....((	chr17:57697252-57697508(+)$1	1	56	63	13.0149
))))).)	chr21:45719861-45720167(+)$1	1	263	270	16.9701
))((((.	chrX:153590510-153590714(-)$1	1	84	91	16.9701
(.(((.(	chr11:11863490-11863754(+)$1	1	67	74	16.9701
.(((.((	chrX:153587258-153587462(-)$1	1	12	19	13.5373
(((((((	chr2:102314252-102314514(+)$1	1	15	22	13.6119
..)))).	chr7:2419023-2419247(+)$1	1	107	114	13.2388
)))))).	chrX:153588168-153588373(-)$1	1	23	30	13.1641
...((((	chr16:58633136-58633390(-)$1	1	1	8	13.0149
))))).)	chr11:61067532-61067776(-)$1	1	212	219	13.1641
)))))))	chr7:23145304-23145785(+)$1	1	106	113	13.6119
))...))	chr16:89556802-89557063(-)$1	1	83	90	13.1641
))))...	chr19:48639202-48639485(-)$1	1	80	87	12.7910
....)))	chr3:41240891-41241197(+)$1	1	138	145	13.8358
(((((((	chr11:62303928-62304139(-)$1	1	2	9	13.3880
(((((((	chr14:31676347-31676605(-)$1	1	59	66	13.1641
(((....	chr3:47893460-47893737(-)$1	1	135	142	16.9701
(((((((	chrX:153581967-153582195(-)$1	1	17	24	16.9701
)))).))	chrX:40945135-40945390(+)$1	1	194	201	16.9701
))..)))	chrX:153590565-153590800(-)$1	1	170	177	16.9701
)....))	chr3:47882416-47882657(+)$1	1	113	120	13.2388
.((.(((	chr7:98609856-98610136(+)$1	1	50	57	12.7910
).)))))	chr1:36621780-36622067(+)$1	1	172	179	13.1641
.))))).	chr3:184040919-184041126(+)$1	1	193	200	16.9701
)))))))	chr2:55646619-55646905(-)$1	1	129	136	13.1641
(((..((	chr3:184052843-184053091(+)$1	1	58	65	13.0149
).)))((	chr17:7811116-7811396(+)$1	1	41	48	13.2388
.))))((	chr3:184041092-184041348(+)$1	1	20	27	16.9701
(((((((	chrX:153585789-153586060(-)$1	1	16	23	13.6119
))))...	chr19:8550821-8551134(+)$1	1	285	292	16.9701
(((((((	chrX:153579871-153580101(-)$1	1	31	38	13.5373
))..)))	chr16:3767362-3767623(-)$1	1	98	105	12.5671
(....((	chrX:153585860-153586078(-)$1	1	3	10	12.7164
(((...)	chr4:1857685-1857975(-)$1	1	78	85	13.3880
)))....	chr2:102314314-102314586(+)$1	1	151	158	13.3880
(((.(((	chr2:44222877-44223106(-)$1	1	26	33	13.1641
((((((.	chr19:10792641-10792891(+)$1	1	59	66	12.7164
(((((.(	chr19:1206013-1206269(+)$1	1	135	142	13.8358
((((.((	chr22:19711754-19712026(+)$1	1	59	66	12.7164
((((((.	chr17:80441510-80441752(+)$1	1	195	202	13.1641
)))))).	chr17:8533870-8534143(-)$1	1	113	120	12.7164
))))...	chr19:14554186-14554420(+)$1	1	12	19	13.5373
))...))	chr8:98656578-98656854(+)$1	1	115	122	13.8358
.(((((.	chr12:67663184-67663476(+)$1	1	194	201	12.7910
(.((.(.	chr12:116714764-116715052(-)$1	1	88	95	12.5671
))).(((	chr7:39989889-39990175(+)$1	1	141	148	12.7910

#PSSM
G : 0.79	g : 0.07	C : 0.04	c : 0.02	U : 0.02	A : 0.02	
C : 0.71	c : 0.08	G : 0.07	A : 0.05	U : 0.04	g : 0.01	
C : 0.82	c : 0.08	G : 0.05	U : 0.01	u : 0.01	
C : 0.89	c : 0.10	
U : 0.68	C : 0.08	G : 0.05	u : 0.05	A : 0.05	c : 0.02	g : 0.01	
G : 0.89	g : 0.10	
G : 0.77	C : 0.10	g : 0.08	U : 0.01	A : 0.01	

#score	936.104477611941
#seq	67
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF304YLR_TBRG4_CDS_m1_run1.nuc.txt

#NT
UCAUCCGCCA	chrM:9744-9957(+)$1	213	118	128	18.4444
UCAUCCCCCU	chrM:10827-11055(+)$1	228	39	49	23.6666
UCAUCCCCCU	chrM:10795-11002(+)$1	207	71	81	23.6666
UCAUCCCUCU	chrM:10131-10346(+)$1	215	195	205	21.1111
UCAUCGCCCU	chrM:7744-7957(+)$1	213	65	75	20.4444
UCAUCGCCCU	chrM:7789-7993(+)$1	204	20	30	20.4444
UCAUCCCUGU	chrM:12501-12710(+)$1	209	101	111	17.0000
UCAUCCCCCU	chrM:10750-10956(+)$1	206	116	126	23.6666
UCAUCACCCA	chrM:8405-8637(+)$1	232	25	35	17.0000
UCAUCCGCCA	chrM:9835-10043(+)$1	208	27	37	18.4444
UCAUCCCUGU	chrM:12533-12742(+)$1	209	69	79	17.0000
UCAUCGCCCU	chrM:5324-5599(+)$1	275	131	141	20.4444
UUAUCCUCCU	chrM:15061-15268(+)$1	207	35	45	17.0000
UCAUCCGCCA	chrM:9654-9874(+)$1	220	208	218	18.4444
UCAUCCCUGU	chrM:12510-12733(+)$1	223	92	102	17.0000
UCAUCCGCCA	chrM:9726-9943(+)$1	217	136	146	18.4444
UCAUCGCCCU	chrM:7778-7983(+)$1	205	31	41	20.4444
UUAUCCUCCU	chrM:15044-15258(+)$1	214	52	62	17.0000
UCAUCCCCCU	chrM:10803-11027(+)$1	224	63	73	23.6666
UCAUCCCUGU	chrM:12567-12821(+)$1	254	35	45	17.0000
UUAUCCUCCU	chrM:15016-15231(+)$1	215	80	90	17.0000
UCAUCCCCCU	chrM:10710-10950(+)$1	240	156	166	23.6666
UUAUCCUCCU	chrM:14969-15216(+)$1	247	127	137	17.0000
UCAUCCCUCU	chrM:10173-10380(+)$1	207	153	163	21.1111
UUAUCCUCCU	chrM:15031-15244(+)$1	213	65	75	17.0000
UCAUCGCCCU	chrM:7757-7978(+)$1	221	52	62	20.4444
UCAACCCCCU	chrM:11471-11721(+)$1	250	37	47	18.8888
UCAUCCCUCU	chrM:10209-10429(+)$1	220	117	127	21.1111
UCAUCCCUCU	chrM:10180-10387(+)$1	207	146	156	21.1111
UCAUCCCUCU	chrM:10146-10373(+)$1	227	180	190	21.1111
UCAUCGCCCU	chrM:7783-7989(+)$1	206	26	36	20.4444
UCAUCCGCCA	chrM:9783-10002(+)$1	219	79	89	18.4444
UCAUCCCCCU	chrM:10782-10990(+)$1	208	84	94	23.6666
UAAUCUCCCU	chrM:11032-11262(+)$1	230	23	33	15.5555
UCAUCCGCCA	chrM:9757-9977(+)$1	220	105	115	18.4444
GCAUCCCCCU	chrM:13589-13808(+)$1	219	170	180	19.1111
UCAUCCCUCU	chrM:10194-10408(+)$1	214	132	142	21.1111
UCAUCCCCCU	chrM:10756-10982(+)$1	226	110	120	23.6666
UCAUCCGCCA	chrM:9802-10028(+)$1	226	60	70	18.4444
UCAUCCCCCU	chrM:10791-10995(+)$1	204	75	85	23.6666
UCAUCCGCCA	chrM:9779-9983(+)$1	204	83	93	18.4444
UCAUCGCCCU	chrM:7793-8044(+)$1	251	16	26	20.4444
UCAUCCCUCU	chrM:10187-10394(+)$1	207	139	149	21.1111
GCAUCCCCCU	chrM:13608-13840(+)$1	232	151	161	19.1111

#otherMatches

#Struct PSSM
::::::::::	chrM:9828-10035(+)$1	207	34	44	18.4444
^^^^^^eeee	chrM:9744-9957(+)$1	213	118	128	18.4444
^^^^^^^^^^	chrM:10827-11055(+)$1	228	39	49	23.6666
^^^^^^^^^^	chrM:10795-11002(+)$1	207	71	81	23.6666
c55555ccc:	chrM:10131-10346(+)$1	215	195	205	21.1111
dd[bb^^^^^	chrM:7744-7957(+)$1	213	65	75	20.4444
LLLEEEEE::	chrM:7789-7993(+)$1	204	20	30	20.4444
::::bb[fff	chrM:12501-12710(+)$1	209	101	111	17.0000
G:::::::::	chrM:10750-10956(+)$1	206	116	126	23.6666
::::::::::	chrM:8405-8637(+)$1	232	25	35	17.0000
^^^^^^dddd	chrM:9835-10043(+)$1	208	27	37	18.4444
::::bb[fff	chrM:12533-12742(+)$1	209	69	79	17.0000
:::::bbrrr	chrM:5324-5599(+)$1	275	131	141	20.4444
::::FFFFFF	chrM:15061-15268(+)$1	207	35	45	17.0000
^^^^^^eeee	chrM:9654-9874(+)$1	220	208	218	18.4444
::::bb[fff	chrM:12510-12733(+)$1	223	92	102	17.0000
^^^^^^eeee	chrM:9726-9943(+)$1	217	136	146	18.4444
:::::bbwww	chrM:7778-7983(+)$1	205	31	41	20.4444
rrrrrrrrrd	chrM:15044-15258(+)$1	214	52	62	17.0000
^^^^^^^^^^	chrM:10803-11027(+)$1	224	63	73	23.6666
::::bb[fff	chrM:12567-12821(+)$1	254	35	45	17.0000
:::::::::d	chrM:15016-15231(+)$1	215	80	90	17.0000
^^^^^^^^^^	chrM:10710-10950(+)$1	240	156	166	23.6666
b]dddd:::d	chrM:14969-15216(+)$1	247	127	137	17.0000
c55555ccc:	chrM:10173-10380(+)$1	207	153	163	21.1111
:::::::::d	chrM:15031-15244(+)$1	213	65	75	17.0000
:::::bbwww	chrM:7757-7978(+)$1	221	52	62	20.4444
cccooooooc	chrM:11471-11721(+)$1	250	37	47	18.8888
c55555ccc:	chrM:10209-10429(+)$1	220	117	127	21.1111
c55555ccc:	chrM:10180-10387(+)$1	207	146	156	21.1111
::::::::::	chrM:10146-10373(+)$1	227	180	190	21.1111
dd[bb^^^^^	chrM:7783-7989(+)$1	206	26	36	20.4444
^^^^^^eeee	chrM:9783-10002(+)$1	219	79	89	18.4444
^^^^^^^^^^	chrM:10782-10990(+)$1	208	84	94	23.6666
:::::::EEE	chrM:11032-11262(+)$1	230	23	33	15.5555
^^^^^^eeee	chrM:9757-9977(+)$1	220	105	115	18.4444
::::::::::	chrM:13589-13808(+)$1	219	170	180	19.1111
wwwwwwwwwf	chrM:10194-10408(+)$1	214	132	142	21.1111
G:::::::::	chrM:10756-10982(+)$1	226	110	120	23.6666
::::::::::	chrM:9802-10028(+)$1	226	60	70	18.4444
^^^^^^^^^^	chrM:10791-10995(+)$1	204	75	85	23.6666
^^^^^^eeee	chrM:9779-9983(+)$1	204	83	93	18.4444
LLLEEEEE::	chrM:7793-8044(+)$1	251	16	26	20.4444
c55555ccc:	chrM:10187-10394(+)$1	207	139	149	21.1111
bb::::::::	chrM:13608-13840(+)$1	232	151	161	19.1111

#DB
..........	chrM:9828-10035(+)$1	1	34	44	18.4444
......))))	chrM:9744-9957(+)$1	1	118	128	18.4444
..........	chrM:10827-11055(+)$1	1	39	49	23.6666
..........	chrM:10795-11002(+)$1	1	71	81	23.6666
).....))).	chrM:10131-10346(+)$1	1	195	205	21.1111
((.((.....	chrM:7744-7957(+)$1	1	65	75	20.4444
...(((((..	chrM:7789-7993(+)$1	1	20	30	20.4444
....((.(((	chrM:12501-12710(+)$1	1	101	111	17.0000
).........	chrM:10750-10956(+)$1	1	116	126	23.6666
..........	chrM:8405-8637(+)$1	1	25	35	17.0000
......))))	chrM:9835-10043(+)$1	1	27	37	18.4444
....((.(((	chrM:12533-12742(+)$1	1	69	79	17.0000
.....((...	chrM:5324-5599(+)$1	1	131	141	20.4444
....((((((	chrM:15061-15268(+)$1	1	35	45	17.0000
......))))	chrM:9654-9874(+)$1	1	208	218	18.4444
....((.(((	chrM:12510-12733(+)$1	1	92	102	17.0000
......))))	chrM:9726-9943(+)$1	1	136	146	18.4444
.....((...	chrM:7778-7983(+)$1	1	31	41	20.4444
.........)	chrM:15044-15258(+)$1	1	52	62	17.0000
..........	chrM:10803-11027(+)$1	1	63	73	23.6666
....((.(((	chrM:12567-12821(+)$1	1	35	45	17.0000
.........(	chrM:15016-15231(+)$1	1	80	90	17.0000
..........	chrM:10710-10950(+)$1	1	156	166	23.6666
).))))...(	chrM:14969-15216(+)$1	1	127	137	17.0000
).....))).	chrM:10173-10380(+)$1	1	153	163	21.1111
.........(	chrM:15031-15244(+)$1	1	65	75	17.0000
.....((...	chrM:7757-7978(+)$1	1	52	62	20.4444
(((......)	chrM:11471-11721(+)$1	1	37	47	18.8888
).....))).	chrM:10209-10429(+)$1	1	117	127	21.1111
).....))).	chrM:10180-10387(+)$1	1	146	156	21.1111
..........	chrM:10146-10373(+)$1	1	180	190	21.1111
((.((.....	chrM:7783-7989(+)$1	1	26	36	20.4444
......))))	chrM:9783-10002(+)$1	1	79	89	18.4444
..........	chrM:10782-10990(+)$1	1	84	94	23.6666
.......(((	chrM:11032-11262(+)$1	1	23	33	15.5555
......))))	chrM:9757-9977(+)$1	1	105	115	18.4444
..........	chrM:13589-13808(+)$1	1	170	180	19.1111
.........)	chrM:10194-10408(+)$1	1	132	142	21.1111
).........	chrM:10756-10982(+)$1	1	110	120	23.6666
..........	chrM:9802-10028(+)$1	1	60	70	18.4444
..........	chrM:10791-10995(+)$1	1	75	85	23.6666
......))))	chrM:9779-9983(+)$1	1	83	93	18.4444
...(((((..	chrM:7793-8044(+)$1	1	16	26	20.4444
).....))).	chrM:10187-10394(+)$1	1	139	149	21.1111
))........	chrM:13608-13840(+)$1	1	151	161	19.1111

#PSSM
U : 0.95	G : 0.04	
C : 0.86	U : 0.11	A : 0.02	
A : 1.00	
U : 0.97	A : 0.02	
C : 1.00	
C : 0.80	G : 0.15	A : 0.02	U : 0.02	
C : 0.68	G : 0.20	U : 0.11	
C : 0.75	U : 0.24	
C : 0.91	G : 0.08	
U : 0.77	A : 0.22	

#score	888.8888888888889
#seq	45
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_UTR_m1_run2.nuc.txt

#NT
UUUCUUUCUUUUU	chr12:95415934-95416231(-)$1	297	35	48	26.0408
UUUUUUUUUUUUU	chr22:32353304-32353614(+)$1	310	87	100	31.5510
uuuuuuuuuuuuu	chr1:156495307-156495567(-)$1	260	21	34	31.5510
UCUUUUUUUUUUU	chr12:57031943-57032256(-)$1	313	20	33	26.9591
uuuuuuuguuuug	chr1:24999378-24999590(+)$1	212	77	90	28.6938
UUUUUUUUUUUUU	chr12:56366276-56366543(+)$1	267	94	107	31.5510
UUUUUUUGUUGUU	chr6:17615403-17615627(-)$1	224	38	51	28.6938
UUUCUUUGAUUUU	chr5:126889316-126889575(+)$1	259	80	93	23.6938
UUAUUUCGUUUUU	chr1:203823037-203823282(+)$1	245	8	21	23.7959
uuuuuuuguuuuu	chr1:46093341-46093586(-)$1	245	172	185	32.6734
UUUUCUUGUUUUG	chr22:19507903-19508139(+)$1	236	79	92	24.2040
UUUUUUUUUUUUU	chr17:25640191-25640400(+)$1	209	89	102	31.5510
UUUUUUAGUAUUU	chr17:46626303-46626630(-)$1	327	93	106	23.2857
UUUUUUUUUUUUU	chr12:69667809-69668081(+)$1	272	80	93	31.5510
UUUUUUUGUUUGU	chr4:17802422-17802747(-)$1	325	252	265	28.2857
uuuuuuuuuuuuu	chr3:10142855-10143091(+)$1	236	206	219	31.5510
UUUUUUUGUUGUU	chr6:17615453-17615682(-)$1	229	93	106	28.6938
UUuuuuuguuuuu	chr5:176946705-176946947(-)$1	242	58	71	32.6734
GUuuuuuguuuuu	chr13:107196100-107196340(-)$1	240	65	78	28.1836
UUUUUUUGUUUGU	chr1:231702037-231702291(+)$1	254	238	251	28.2857
uuuuuuuuuuuuu	chr3:9519133-9519377(+)$1	244	230	243	31.5510
UUUUUUUUUUUUU	chr11:62533907-62534240(+)$1	333	291	304	31.5510
uuauuuuauuuuU	chrX:48830100-48830383(-)$1	283	84	97	26.0408
UUUUUUUGUUAUU	chr18:3458093-3458396(+)$1	303	131	144	28.4897
UUAUUUUAUUUUU	chr11:33162912-33163211(-)$1	299	8	21	26.0408
uuuuuuuguuguu	chr6:160176720-160177029(+)$1	309	37	50	28.6938
UUAUUUUGUUUUA	chr15:63900786-63901029(-)$1	243	140	153	24.3061
UUUUUUUGUUUGU	chr5:65476417-65476644(+)$1	227	10	23	28.2857
uuuuuuuuuuuuu	chr5:179041762-179042019(-)$1	257	212	225	31.5510
UUUAUUUGUUUUG	chr20:57254225-57254502(+)$1	277	97	110	24.6122
uuuuuuuguuuug	chr2:232319386-232319660(-)$1	274	70	83	28.6938
UUUUGUUAUUUUU	chr11:9302687-9302912(-)$1	225	70	83	25.6326
GUUUUUUGUUUUU	chr1:183523133-183523393(+)$1	260	112	125	28.1836
uuuuuuuguuuuu	chr1:46093226-46093491(-)$1	265	77	90	32.6734
UUUUUUUUUUCUU	chr16:2820991-2821287(+)$1	296	22	35	27.5714
UUUAUUUGUUCUU	chr6:8079819-8080070(-)$1	251	98	111	24.6122
uuuuuuuuuuuuu	chr16:30003327-30003595(+)$1	268	84	97	31.5510
UUUUUUUUUUUUU	chr18:9954148-9954442(+)$1	294	85	98	31.5510
UUUUUUUGUGCUU	chr7:151832698-151832930(-)$1	232	116	129	24.0000
UUUGUUUGUUUUA	chr11:13752800-13753050(+)$1	250	135	148	24.2040
UUUAUGUGUUUUU	chrX:153609534-153609815(+)$1	281	122	135	23.7959
uuuuuuuguuuuu	chr1:154243159-154243401(+)$1	242	79	92	32.6734
ACUUUUUGuuuuu	chr13:107195907-107196163(-)$1	256	192	205	23.4897
UUUUUUUUUUUUU	chr7:12730158-12730402(+)$1	244	92	105	31.5510
uuuuuuuuuuuuu	chr5:179041673-179041882(-)$1	209	75	88	31.5510
uuuucuuguuuuu	chr1:37959067-37959326(-)$1	259	65	78	28.1836
UUUUUUUUUUUUU	chr17:25640240-25640472(+)$1	232	40	53	31.5510
uuuuuuucuuuuu	chr15:50852551-50852825(-)$1	274	73	86	30.2244

#otherMatches

#Struct PSSM
:::::::======	chr18:214451-214705(-)$1	254	87	100	30.2244
^^^^^^^^^^^^^	chr12:95415934-95416231(-)$1	297	35	48	26.0408
hvvvvvvvvvvvv	chr22:32353304-32353614(+)$1	310	87	100	31.5510
:::::::::::::	chr1:156495307-156495567(-)$1	260	21	34	31.5510
+++++++++++++	chr12:57031943-57032256(-)$1	313	20	33	26.9591
gggg^^^^^^^^^	chr1:24999378-24999590(+)$1	212	77	90	28.6938
JJJJJJJJJJJPP	chr12:56366276-56366543(+)$1	267	94	107	31.5510
fff::::::::::	chr6:17615403-17615627(-)$1	224	38	51	28.6938
:::::::::::::	chr5:126889316-126889575(+)$1	259	80	93	23.6938
EEffffffmmmmf	chr1:203823037-203823282(+)$1	245	8	21	23.7959
I::::::::::::	chr1:46093341-46093586(-)$1	245	172	185	32.6734
:::::::iiiiii	chr22:19507903-19508139(+)$1	236	79	92	24.2040
n==========22	chr17:25640191-25640400(+)$1	209	89	102	31.5510
ennnnneeeeedd	chr17:46626303-46626630(-)$1	327	93	106	23.2857
!ccc!!eeeeeyy	chr12:69667809-69668081(+)$1	272	80	93	31.5510
ggggggg[a[a[c	chr4:17802422-17802747(-)$1	325	252	265	28.2857
FFFFFF~~~~CCC	chr3:10142855-10143091(+)$1	236	206	219	31.5510
ggg4444ccc444	chr6:17615453-17615682(-)$1	229	93	106	28.6938
NNNNNGGGGGGG:	chr5:176946705-176946947(-)$1	242	58	71	32.6734
>>>>>>>>>>>>>	chr13:107196100-107196340(-)$1	240	65	78	28.1836
eeedddd]dddd:	chr1:231702037-231702291(+)$1	254	238	251	28.2857
:::::::::::::	chr3:9519133-9519377(+)$1	244	230	243	31.5510
ee[bbqqqqqqqq	chr11:62533907-62534240(+)$1	333	291	304	31.5510
xxxxxxxxxxxxx	chrX:48830100-48830383(-)$1	283	84	97	26.0408
::::GGGGGGG{B	chr18:3458093-3458396(+)$1	303	131	144	28.4897
::::::::::fff	chr11:33162912-33163211(-)$1	299	8	21	26.0408
!bb!!ffffff##	chr6:160176720-160177029(+)$1	309	37	50	28.6938
ff:::::::::::	chr15:63900786-63901029(-)$1	243	140	153	24.3061
E::::::::::HH	chr5:65476417-65476644(+)$1	227	10	23	28.2857
=====]dddd]cc	chr5:179041762-179042019(-)$1	257	212	225	31.5510
III::::FFFFFF	chr20:57254225-57254502(+)$1	277	97	110	24.6122
:::::::::::::	chr2:232319386-232319660(-)$1	274	70	83	28.6938
d::::ffffff##	chr11:9302687-9302912(-)$1	225	70	83	25.6326
iizzzzzzzzzzz	chr1:183523133-183523393(+)$1	260	112	125	28.1836
:::::::::::::	chr1:46093226-46093491(-)$1	265	77	90	32.6734
=!!eeeee[ccc[	chr16:2820991-2821287(+)$1	296	22	35	27.5714
eeeee22eeeee:	chr6:8079819-8080070(-)$1	251	98	111	24.6122
^^^^^^^^^^^^^	chr16:30003327-30003595(+)$1	268	84	97	31.5510
::::::iiiiiii	chr18:9954148-9954442(+)$1	294	85	98	31.5510
b[ffffff[bbee	chr7:151832698-151832930(-)$1	232	116	129	24.0000
=======[bb[dd	chr11:13752800-13753050(+)$1	250	135	148	24.2040
c++++++++++++	chrX:153609534-153609815(+)$1	281	122	135	23.7959
=========++++	chr1:154243159-154243401(+)$1	242	79	92	32.6734
=======[=====	chr13:107195907-107196163(-)$1	256	192	205	23.4897
vvvvvvvvvvvvv	chr7:12730158-12730402(+)$1	244	92	105	31.5510
:::::::::::::	chr5:179041673-179041882(-)$1	209	75	88	31.5510
fff4444eeeeec	chr1:37959067-37959326(-)$1	259	65	78	28.1836
======:IIIIII	chr17:25640240-25640472(+)$1	232	40	53	31.5510
:::::::::::::	chr15:50852551-50852825(-)$1	274	73	86	30.2244

#DB
.......((((((	chr18:214451-214705(-)$1	1	87	100	30.2244
.............	chr12:95415934-95416231(-)$1	1	35	48	26.0408
(............	chr22:32353304-32353614(+)$1	1	87	100	31.5510
.............	chr1:156495307-156495567(-)$1	1	21	34	31.5510
.............	chr12:57031943-57032256(-)$1	1	20	33	26.9591
((((.........	chr1:24999378-24999590(+)$1	1	77	90	28.6938
(((((((((((..	chr12:56366276-56366543(+)$1	1	94	107	31.5510
)))..........	chr6:17615403-17615627(-)$1	1	38	51	28.6938
.............	chr5:126889316-126889575(+)$1	1	80	93	23.6938
((((((((....)	chr1:203823037-203823282(+)$1	1	8	21	23.7959
)............	chr1:46093341-46093586(-)$1	1	172	185	32.6734
.......((((((	chr22:19507903-19508139(+)$1	1	79	92	24.2040
.))))))))))..	chr17:25640191-25640400(+)$1	1	89	102	31.5510
(.....)))))((	chr17:46626303-46626630(-)$1	1	93	106	23.2857
.(((..(((((..	chr12:69667809-69668081(+)$1	1	80	93	31.5510
(((((((.(.(.(	chr4:17802422-17802747(-)$1	1	252	265	28.2857
))))))....)))	chr3:10142855-10143091(+)$1	1	206	219	31.5510
)))....)))...	chr6:17615453-17615682(-)$1	1	93	106	28.6938
.....(((((((.	chr5:176946705-176946947(-)$1	1	58	71	32.6734
.............	chr13:107196100-107196340(-)$1	1	65	78	28.1836
))))))).)))).	chr1:231702037-231702291(+)$1	1	238	251	28.2857
.............	chr3:9519133-9519377(+)$1	1	230	243	31.5510
((.((........	chr11:62533907-62534240(+)$1	1	291	304	31.5510
.............	chrX:48830100-48830383(-)$1	1	84	97	26.0408
....(((((((.(	chr18:3458093-3458396(+)$1	1	131	144	28.4897
..........(((	chr11:33162912-33163211(-)$1	1	8	21	26.0408
.((..((((((..	chr6:160176720-160177029(+)$1	1	37	50	28.6938
))...........	chr15:63900786-63901029(-)$1	1	140	153	24.3061
(..........((	chr5:65476417-65476644(+)$1	1	10	23	28.2857
))))).)))).))	chr5:179041762-179042019(-)$1	1	212	225	31.5510
)))....((((((	chr20:57254225-57254502(+)$1	1	97	110	24.6122
.............	chr2:232319386-232319660(-)$1	1	70	83	28.6938
)....((((((..	chr11:9302687-9302912(-)$1	1	70	83	25.6326
((...........	chr1:183523133-183523393(+)$1	1	112	125	28.1836
.............	chr1:46093226-46093491(-)$1	1	77	90	32.6734
(..(((((.(((.	chr16:2820991-2821287(+)$1	1	22	35	27.5714
)))))..))))).	chr6:8079819-8080070(-)$1	1	98	111	24.6122
.............	chr16:30003327-30003595(+)$1	1	84	97	31.5510
......(((((((	chr18:9954148-9954442(+)$1	1	85	98	31.5510
(.((((((.((((	chr7:151832698-151832930(-)$1	1	116	129	24.0000
(((((((.((.((	chr11:13752800-13753050(+)$1	1	135	148	24.2040
(............	chrX:153609534-153609815(+)$1	1	122	135	23.7959
(((((((((....	chr1:154243159-154243401(+)$1	1	79	92	32.6734
(((((((.(((((	chr13:107195907-107196163(-)$1	1	192	205	23.4897
.............	chr7:12730158-12730402(+)$1	1	92	105	31.5510
.............	chr5:179041673-179041882(-)$1	1	75	88	31.5510
)))....))))))	chr1:37959067-37959326(-)$1	1	65	78	28.1836
)))))).((((((	chr17:25640240-25640472(+)$1	1	40	53	31.5510
.............	chr15:50852551-50852825(-)$1	1	73	86	30.2244

#PSSM
U : 0.63	u : 0.30	G : 0.04	A : 0.02	
U : 0.65	u : 0.30	C : 0.04	
U : 0.59	u : 0.32	A : 0.06	a : 0.02	
U : 0.53	u : 0.34	A : 0.06	C : 0.04	G : 0.02	
U : 0.61	u : 0.32	C : 0.02	G : 0.02	c : 0.02	
U : 0.63	u : 0.34	G : 0.02	
U : 0.61	u : 0.34	C : 0.02	A : 0.02	
G : 0.36	U : 0.20	g : 0.18	u : 0.12	C : 0.04	A : 0.04	a : 0.02	c : 0.02	
U : 0.61	u : 0.36	A : 0.02	
U : 0.59	u : 0.36	A : 0.02	G : 0.02	
U : 0.51	u : 0.34	C : 0.06	G : 0.04	A : 0.02	g : 0.02	
U : 0.57	u : 0.36	G : 0.06	
U : 0.57	u : 0.30	g : 0.04	G : 0.04	A : 0.04	

#score	1396.5102040816337
#seq	49
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_transcript_m3_run1.nuc.txt

#NT
CCCCUUCC	chr6:33289592-33289853(-)$1	261	89	97	15.6981
CUCCUGCC	chr2:26467259-26467498(-)$1	239	141	149	15.6037
CCCCUGAC	chr17:63532327-63532538(-)$1	211	18	26	14.7547
CACCUGCC	chr7:100176020-100176393(-)$1	373	110	118	15.3207
CCGCUGCC	chr20:42087068-42087288(+)$1	220	206	214	15.1320
CCCCUGCG	chr1:169076051-169076300(+)$1	249	171	179	15.1320
CCCCAGCC	chr20:30193737-30193984(+)$1	247	185	193	15.9811
GCCCUGCC	chr3:52832859-52833119(+)$1	260	3	11	15.5094
CCGCUGCC	chr7:100843334-100843581(-)$1	247	160	168	15.1320
CCCCUGCG	chr11:767297-767555(-)$1	258	102	110	15.1320
CCCCGGCC	chr6:7888796-7889042(-)$1	246	149	157	15.6037
CCCCUCCC	chr16:70292750-70292983(-)$1	233	127	135	15.4150
CCCCUCCC	chr1:113241019-113241263(+)$1	244	112	120	15.4150
GCCCUGCC	chr19:41837870-41838131(-)$1	261	56	64	15.5094
CCUCUGCC	chr12:57626809-57627107(+)$1	298	87	95	14.9433
CCCCCGCC	chr19:1274475-1274772(+)$1	297	122	130	15.6981
CCCCUGCU	chr19:51842270-51842613(-)$1	343	304	312	15.2264
CCCCUGCU	chr17:26662782-26663036(+)$1	254	144	152	15.2264
CGCCUGCC	chr19:2207469-2207710(+)$1	241	22	30	15.2264
CCCCAGCC	chr16:2820159-2820470(+)$1	311	278	286	15.9811
CCCCUGCC	chr17:36904307-36904550(-)$1	243	119	127	19.3773
CUCCUGCC	chr20:2819408-2819649(-)$1	241	136	144	15.6037
CCCCUACC	chr9:117014698-117014947(+)$1	249	69	77	15.4150
UCCCUGCC	chr8:145107965-145108211(-)$1	246	169	177	15.2264
CUCCAGCC	chr20:32661501-32661799(+)$1	298	94	102	12.2075
CCCCUGUC	chr20:61598000-61598221(+)$1	221	114	122	14.8490
CUCCUGCC	chr1:1325508-1325732(-)$1	224	105	113	15.6037
CCCCUGCC	chr6:18264475-18264720(-)$1	245	140	148	19.3773
CCCCUGCC	chrX:108976219-108976446(-)$1	227	116	124	19.3773
CCCCGGCC	chr9:131451839-131452070(+)$1	231	146	154	15.6037
GCCCUGCC	chr8:144895568-144895819(-)$1	251	62	70	15.5094
CACCUGCC	chr19:580268-580507(+)$1	239	88	96	15.3207
CCCCUUCC	chr16:3729607-3729821(-)$1	214	129	137	15.6981
CCCCCGCC	chr2:234762860-234763132(-)$1	272	109	117	15.6981
CCCCUUCC	chr1:161193253-161193482(-)$1	229	42	50	15.6981
CCCCAGCC	chr20:25263812-25264057(+)$1	245	117	125	15.9811
CCCCAGCC	chr19:19760636-19760911(-)$1	275	131	139	15.9811
UCCCUGCC	chr2:241569147-241569427(+)$1	280	130	138	15.2264
CCACUGCC	chr2:21265276-21265516(-)$1	240	85	93	14.9433
CUCCUGCC	chr1:31440020-31440257(-)$1	237	202	210	15.6037
CCCCUGCA	chr3:52265150-52265441(-)$1	291	185	193	15.0377
cccccgcc	chr19:59056364-59056603(+)$1	239	46	54	15.6981
CCCCUACC	chr17:41611092-41611332(-)$1	240	70	78	15.4150
CCCCUUCC	chr14:24899766-24900046(+)$1	280	143	151	15.6981
CCGCUGCC	chr17:79479601-79479818(-)$1	217	1	9	15.1320
CCCCUUCC	chr16:30980816-30981102(+)$1	286	68	76	15.6981
CCCCAGCC	chr8:21925100-21925340(+)$1	240	134	142	15.9811
CCCCUGCC	chr11:8704615-8704904(+)$1	289	84	92	19.3773
GCCCUGCC	chr9:139731994-139732218(+)$1	224	14	22	15.5094
GCCCUGCC	chr2:207024688-207024923(+)$1	235	37	45	15.5094
CCCCUGCC	chr15:75498191-75498476(+)$1	285	122	130	19.3773
CCCCUGCU	chr16:2810109-2810426(+)$1	317	248	256	15.2264

#otherMatches

#Struct PSSM
22dddd::	chr19:45411102-45411346(+)$1	244	180	188	14.8490
8=======	chr6:33289592-33289853(-)$1	261	89	97	15.6981
nnneeeee	chr2:26467259-26467498(-)$1	239	141	149	15.6037
F{CCCEEE	chr17:63532327-63532538(-)$1	211	18	26	14.7547
ee::DDDD	chr7:100176020-100176393(-)$1	373	110	118	15.3207
dccc]ddd	chr20:42087068-42087288(+)$1	220	206	214	15.1320
nnnneeee	chr1:169076051-169076300(+)$1	249	171	179	15.1320
::::::::	chr20:30193737-30193984(+)$1	247	185	193	15.9811
eeeeemmm	chr3:52832859-52833119(+)$1	260	3	11	15.5094
========	chr7:100843334-100843581(-)$1	247	160	168	15.1320
ffff]fff	chr11:767297-767555(-)$1	258	102	110	15.1320
dffffffb	chr6:7888796-7889042(-)$1	246	149	157	15.6037
accccccb	chr16:70292750-70292983(-)$1	233	127	135	15.4150
lllddddc	chr1:113241019-113241263(+)$1	244	112	120	15.4150
[bbbb[ff	chr19:41837870-41838131(-)$1	261	56	64	15.5094
cc[a[fff	chr12:57626809-57627107(+)$1	298	87	95	14.9433
333hhhhh	chr19:1274475-1274772(+)$1	297	122	130	15.6981
FFFF}CCC	chr19:51842270-51842613(-)$1	343	304	312	15.2264
dddddddd	chr17:26662782-26663036(+)$1	254	144	152	15.2264
EEEE{EEE	chr19:2207469-2207710(+)$1	241	22	30	15.2264
CCDDDD}F	chr16:2820159-2820470(+)$1	311	278	286	15.9811
pppdddd3	chr17:36904307-36904550(-)$1	243	119	127	19.3773
tttttttt	chr20:2819408-2819649(-)$1	241	136	144	15.6037
yyyyyyyy	chr9:117014698-117014947(+)$1	249	69	77	15.4150
5555bbff	chr8:145107965-145108211(-)$1	246	169	177	15.2264
{CCC:DDD	chr20:32661501-32661799(+)$1	298	94	102	12.2075
5eeeee]e	chr20:61598000-61598221(+)$1	221	114	122	14.8490
ddddHHHH	chr1:1325508-1325732(-)$1	224	105	113	15.6037
ddd]hhhh	chr6:18264475-18264720(-)$1	245	140	148	19.3773
E::::fff	chrX:108976219-108976446(-)$1	227	116	124	19.3773
ggggggee	chr9:131451839-131452070(+)$1	231	146	154	15.6037
ooddddhh	chr8:144895568-144895819(-)$1	251	62	70	15.5094
f::::ccc	chr19:580268-580507(+)$1	239	88	96	15.3207
ccddddac	chr16:3729607-3729821(-)$1	214	129	137	15.6981
dddd!!dd	chr2:234762860-234763132(-)$1	272	109	117	15.6981
ccdddd[b	chr1:161193253-161193482(-)$1	229	42	50	15.6981
ee]a22cc	chr20:25263812-25264057(+)$1	245	117	125	15.9811
========	chr19:19760636-19760911(-)$1	275	131	139	15.9811
===:::::	chr2:241569147-241569427(+)$1	280	130	138	15.2264
FFFFFFLL	chr2:21265276-21265516(-)$1	240	85	93	14.9433
EEEEEBB}	chr1:31440020-31440257(-)$1	237	202	210	15.6037
YGGGGGGG	chr3:52265150-52265441(-)$1	291	185	193	15.0377
eeee[ddd	chr19:59056364-59056603(+)$1	239	46	54	15.6981
wwwwwwww	chr17:41611092-41611332(-)$1	240	70	78	15.4150
!ddddlll	chr14:24899766-24900046(+)$1	280	143	151	15.6981
B{BBKKGG	chr17:79479601-79479818(-)$1	217	1	9	15.1320
dd:fffff	chr16:30980816-30981102(+)$1	286	68	76	15.6981
deeeeenn	chr8:21925100-21925340(+)$1	240	134	142	15.9811
ddbb]ccc	chr11:8704615-8704904(+)$1	289	84	92	19.3773
DBBKKA{I	chr9:139731994-139732218(+)$1	224	14	22	15.5094
FFFFFFAE	chr2:207024688-207024923(+)$1	235	37	45	15.5094
hhhhhhh#	chr15:75498191-75498476(+)$1	285	122	130	19.3773
iiii[bb[	chr16:2810109-2810426(+)$1	317	248	256	15.2264

#DB
..))))..	chr19:45411102-45411346(+)$1	1	180	188	14.8490
.)))))))	chr6:33289592-33289853(-)$1	1	89	97	15.6981
...)))))	chr2:26467259-26467498(-)$1	1	141	149	15.6037
(.((((((	chr17:63532327-63532538(-)$1	1	18	26	14.7547
))..))))	chr7:100176020-100176393(-)$1	1	110	118	15.3207
)))).)))	chr20:42087068-42087288(+)$1	1	206	214	15.1320
....))))	chr1:169076051-169076300(+)$1	1	171	179	15.1320
........	chr20:30193737-30193984(+)$1	1	185	193	15.9811
(((((...	chr3:52832859-52833119(+)$1	1	3	11	15.5094
((((((((	chr7:100843334-100843581(-)$1	1	160	168	15.1320
)))).)))	chr11:767297-767555(-)$1	1	102	110	15.1320
))))))))	chr6:7888796-7889042(-)$1	1	149	157	15.6037
))))))))	chr16:70292750-70292983(-)$1	1	127	135	15.4150
...)))))	chr1:113241019-113241263(+)$1	1	112	120	15.4150
.((((.((	chr19:41837870-41838131(-)$1	1	56	64	15.5094
((.(.(((	chr12:57626809-57627107(+)$1	1	87	95	14.9433
...)))))	chr19:1274475-1274772(+)$1	1	122	130	15.6981
)))).)))	chr19:51842270-51842613(-)$1	1	304	312	15.2264
))))((((	chr17:26662782-26663036(+)$1	1	144	152	15.2264
((((.(((	chr19:2207469-2207710(+)$1	1	22	30	15.2264
)))))).)	chr16:2820159-2820470(+)$1	1	278	286	15.9811
...)))).	chr17:36904307-36904550(-)$1	1	119	127	19.3773
........	chr20:2819408-2819649(-)$1	1	136	144	15.6037
........	chr9:117014698-117014947(+)$1	1	69	77	15.4150
....))))	chr8:145107965-145108211(-)$1	1	169	177	15.2264
.(((.(((	chr20:32661501-32661799(+)$1	1	94	102	12.2075
.))))).)	chr20:61598000-61598221(+)$1	1	114	122	14.8490
))))))))	chr1:1325508-1325732(-)$1	1	105	113	15.6037
))).))))	chr6:18264475-18264720(-)$1	1	140	148	19.3773
)....(((	chrX:108976219-108976446(-)$1	1	116	124	19.3773
((((((((	chr9:131451839-131452070(+)$1	1	146	154	15.6037
..))))))	chr8:144895568-144895819(-)$1	1	62	70	15.5094
)....(((	chr19:580268-580507(+)$1	1	88	96	15.3207
))((((((	chr16:3729607-3729821(-)$1	1	129	137	15.6981
((((..((	chr2:234762860-234763132(-)$1	1	109	117	15.6981
((((((.(	chr1:161193253-161193482(-)$1	1	42	50	15.6981
)).)..))	chr20:25263812-25264057(+)$1	1	117	125	15.9811
))))))))	chr19:19760636-19760911(-)$1	1	131	139	15.9811
))).....	chr2:241569147-241569427(+)$1	1	130	138	15.2264
((((((..	chr2:21265276-21265516(-)$1	1	85	93	14.9433
))))))).	chr1:31440020-31440257(-)$1	1	202	210	15.6037
.)))))))	chr3:52265150-52265441(-)$1	1	185	193	15.0377
((((.(((	chr19:59056364-59056603(+)$1	1	46	54	15.6981
........	chr17:41611092-41611332(-)$1	1	70	78	15.4150
.((((...	chr14:24899766-24900046(+)$1	1	143	151	15.6981
(.((..((	chr17:79479601-79479818(-)$1	1	1	9	15.1320
)).(((((	chr16:30980816-30981102(+)$1	1	68	76	15.6981
((((((..	chr8:21925100-21925340(+)$1	1	134	142	15.9811
)))).)))	chr11:8704615-8704904(+)$1	1	84	92	19.3773
(((..(.(	chr9:139731994-139732218(+)$1	1	14	22	15.5094
((((((((	chr2:207024688-207024923(+)$1	1	37	45	15.5094
(((((((.	chr15:75498191-75498476(+)$1	1	122	130	19.3773
((((.((.	chr16:2810109-2810426(+)$1	1	248	256	15.2264

#PSSM
C : 0.84	G : 0.09	U : 0.03	c : 0.01	
C : 0.83	U : 0.09	A : 0.03	G : 0.01	c : 0.01	
C : 0.88	G : 0.05	U : 0.01	A : 0.01	c : 0.01	
C : 0.98	c : 0.01	
U : 0.79	A : 0.11	G : 0.03	C : 0.03	c : 0.01	
G : 0.81	U : 0.09	C : 0.03	A : 0.03	g : 0.01	
C : 0.92	U : 0.03	A : 0.01	c : 0.01	
C : 0.86	U : 0.05	G : 0.03	A : 0.01	c : 0.01	

#score	834.4528301886788
#seq	53
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_UTR_m1_run1.nuc.txt

#NT
UUUUUUUCUUUACUU	chr5:42800247-42800493(-)$1	246	33	48	21.2000
UUUUUUUUCCUCUUU	chr12:122240355-122240608(-)$1	253	84	99	22.4000
uuuuuuuuuuuuuuu	chr2:68405925-68406175(-)$1	250	27	42	34.3000
UUUUUUGUUUAUGUU	chr6:119500600-119500856(-)$1	256	86	101	22.7000
uuucucuuuuuuuuu	chr15:52842653-52842917(-)$1	264	88	103	27.9000
UUUCUUUUCUUUUUU	chr17:66527617-66527899(+)$1	282	233	248	26.9000
uuuuguuuuguuuuU	chr17:55757043-55757296(+)$1	253	86	101	26.7000
UUUUAUUUUAUUUUU	chr17:42268735-42268988(+)$1	253	88	103	26.6000
CUUUUUUUCUUUUCU	chr6:137518678-137518931(-)$1	253	92	107	22.8000
uuuuuuuuuuuuuuu	chr8:38068639-38068851(+)$1	212	81	96	34.3000
UUGAUUUUUUUUUUU	chr6:32948897-32949152(+)$1	255	50	65	25.9000
UCUUUUUUUUUUUUU	chr1:109855873-109856150(-)$1	277	50	65	30.4000
UCUCUCUUUUUUUUU	chr6:47200147-47200382(-)$1	235	67	82	24.0000
UUUUACUUUUUUUUU	chr12:106632260-106632476(-)$1	216	86	101	27.8000
UUUUGGUUUUUGUUU	chr12:124082139-124082381(+)$1	242	76	91	23.7000
CUUAUUUUUGUUUUU	chr21:34930172-34930423(+)$1	251	31	46	22.8000
UUUUACUUUUUUUUU	chr12:106632201-106632460(-)$1	259	70	85	27.8000
UUAUGUUUUUUUUCU	chr15:39889226-39889471(+)$1	245	45	60	22.2000
uuuuuuguuuuuucu	chr6:30692185-30692429(+)$1	244	90	105	26.8000
UUUUUGUUUUGUUUU	chr11:130014434-130014663(+)$1	229	114	129	28.0000
UUUUUUAUUAUAUUU	chr14:73566999-73567294(+)$1	295	88	103	22.3000
UUUUUUGUAUGUUUU	chr6:128290554-128290793(-)$1	239	160	175	23.7000
UUUCUUUUUUUUUUU	chr9:124094913-124095187(+)$1	274	86	101	30.7000
UUUUUUUUUUUUCUU	chr21:45564841-45565131(+)$1	290	90	105	29.8000
UUUUGUUUUUGUUUG	chr16:3777287-3777569(-)$1	282	95	110	22.8000
UUAUUCUUUUUCUUU	chr3:24021729-24021974(+)$1	245	27	42	23.1000
CUUUUUUUUUUUUUU	chr12:124082307-124082549(+)$1	242	86	101	30.6000
UUUUUGUUUUGUUUU	chr11:130014463-130014681(+)$1	218	85	100	28.0000
UUUUUUCUUUUUUUU	chr4:177253110-177253383(+)$1	273	88	103	30.4000
UUUUUAUUAAUUUUU	chr11:64532613-64532871(-)$1	258	59	74	22.9000
UUUUUUCUUUUGUAU	chr1:228286641-228286904(+)$1	263	58	73	22.3000
UCuuuuuuuuuuuuu	chr9:131456933-131457197(+)$1	264	78	93	30.4000
UCUUUUUUAUUUUUU	chr12:1018403-1018645(+)$1	242	33	48	26.5000
UCUUUUUUUUUUUUU	chr20:5170899-5171186(+)$1	287	86	101	30.4000
UUUUUGUUUUUUUUU	chr3:149087277-149087541(-)$1	264	88	103	31.2000
AUUUUUUUUGUUUCU	chr6:33172042-33172308(+)$1	266	79	94	22.6000
CUuuauuuuuauuuu	chr11:118471691-118471948(+)$1	257	58	73	23.4000
GUUGUUUUCUUUUUU	chr20:35412088-35412361(-)$1	273	120	135	22.5000
UUUAUUUUGUGUUUU	chr12:6679296-6679563(-)$1	267	80	95	23.2000
AUUUUUGUUUAUUUU	chr8:62415342-62415577(-)$1	235	89	104	23.6000
UUUUUUUUUUUUUUU	chr10:102123711-102123950(+)$1	239	163	178	34.3000
uuuuuuuuuuuuuuu	chr11:2151636-2151887(-)$1	251	53	68	34.3000
uuuuguguuuuguuu	chr16:81745012-81745251(+)$1	239	55	70	23.3000
AUUUUCUUUUGUUUU	chr4:155491776-155492032(+)$1	256	189	204	24.6000
UAUUUUUAUUUCUUU	chr5:96369401-96369657(+)$1	256	80	95	21.6000
UUUUUGUUUUGUUAU	chr4:155525331-155525562(-)$1	231	31	46	23.8000
UUUCUCUUUUUUUUU	chr17:70122311-70122582(+)$1	271	188	203	27.9000
AUUUUCUUUUAUUUU	chr2:26613074-26613322(+)$1	248	137	152	24.3000
UUUUUUGAUUUUUUA	chr19:46029981-46030250(+)$1	269	88	103	21.6000

#otherMatches

#Struct PSSM
d^^^^^^^^^^^^^^	chr3:71007742-71007993(-)$1	251	75	90	34.3000
^^^^^^^^^^^^^^^	chr5:42800247-42800493(-)$1	246	33	48	21.2000
>>>>>>>>>>>>>>>	chr12:122240355-122240608(-)$1	253	84	99	22.4000
$$$$$dddd[ggggg	chr2:68405925-68406175(-)$1	250	27	42	34.3000
cc[ddddssssssss	chr6:119500600-119500856(-)$1	256	86	101	22.7000
:::::::::::::::	chr15:52842653-52842917(-)$1	264	88	103	27.9000
:::::::::::::::	chr17:66527617-66527899(+)$1	282	233	248	26.9000
iiiiiieeeee6666	chr17:55757043-55757296(+)$1	253	86	101	26.7000
:::::::::::::::	chr17:42268735-42268988(+)$1	253	88	103	26.6000
:::::::::::::::	chr6:137518678-137518931(-)$1	253	92	107	22.8000
:::::::::::::::	chr8:38068639-38068851(+)$1	212	81	96	34.3000
^^^^^^^^^^^^^^^	chr6:32948897-32949152(+)$1	255	50	65	25.9000
:::::::::::::::	chr1:109855873-109856150(-)$1	277	50	65	30.4000
^^^^^^^^^^^^^^^	chr6:47200147-47200382(-)$1	235	67	82	24.0000
::::JJJJJJJJJJJ	chr12:106632260-106632476(-)$1	216	86	101	27.8000
HHHHHHLLLGGGGGG	chr12:124082139-124082381(+)$1	242	76	91	23.7000
qqqqqqqqccc]ggg	chr21:34930172-34930423(+)$1	251	31	46	22.8000
uuuuuuuuiiiiiii	chr12:106632201-106632460(-)$1	259	70	85	27.8000
eeee::::::::eee	chr15:39889226-39889471(+)$1	245	45	60	22.2000
^^^^^^^^^^^^^^i	chr6:30692185-30692429(+)$1	244	90	105	26.8000
b::::::::::::::	chr11:130014434-130014663(+)$1	229	114	129	28.0000
======]dddd====	chr14:73566999-73567294(+)$1	295	88	103	22.3000
ffff333ccc55555	chr6:128290554-128290793(-)$1	239	160	175	23.7000
ggg^^^^^^^^^^^^	chr9:124094913-124095187(+)$1	274	86	101	30.7000
F:::::::::::::b	chr21:45564841-45565131(+)$1	290	90	105	29.8000
JJQQQQQQQQBB{CC	chr16:3777287-3777569(-)$1	282	95	110	22.8000
:::::BB{DDDDGGG	chr3:24021729-24021974(+)$1	245	27	42	23.1000
JJJJJJJ______JJ	chr12:124082307-124082549(+)$1	242	86	101	30.6000
FFFFF::::::::::	chr11:130014463-130014681(+)$1	218	85	100	28.0000
========]ccc:::	chr4:177253110-177253383(+)$1	273	88	103	30.4000
eeooooooeeeee::	chr11:64532613-64532871(-)$1	258	59	74	22.9000
ddd$$$$$eeeeeoo	chr1:228286641-228286904(+)$1	263	58	73	22.3000
eee::::::::::::	chr9:131456933-131457197(+)$1	264	78	93	30.4000
$$iiiiiiiii!!dd	chr12:1018403-1018645(+)$1	242	33	48	26.5000
JJJJJJ::::::iii	chr20:5170899-5171186(+)$1	287	86	101	30.4000
bbvvvvvvvvvvvvv	chr3:149087277-149087541(-)$1	264	88	103	31.2000
=========333===	chr6:33172042-33172308(+)$1	266	79	94	22.6000
:::::::::::::::	chr11:118471691-118471948(+)$1	257	58	73	23.4000
CC{GGGGGGG{EEEE	chr20:35412088-35412361(-)$1	273	120	135	22.5000
FFFQQQQQQQQIIII	chr12:6679296-6679563(-)$1	267	80	95	23.2000
cmmmmccc8888888	chr8:62415342-62415577(-)$1	235	89	104	23.6000
a[ffffffvvvvvvv	chr10:102123711-102123950(+)$1	239	163	178	34.3000
^^^^^^^^^^^^^^^	chr11:2151636-2151887(-)$1	251	53	68	34.3000
ffffff[========	chr16:81745012-81745251(+)$1	239	55	70	23.3000
:::::hhhhhhhh!!	chr4:155491776-155492032(+)$1	256	189	204	24.6000
ddd[eeeee!!dddd	chr5:96369401-96369657(+)$1	256	80	95	21.6000
JJJJJJJJJJVVVVV	chr4:155525331-155525562(-)$1	231	31	46	23.8000
fffff[dddd&&&&&	chr17:70122311-70122582(+)$1	271	188	203	27.9000
^^^^^^^ffffff22	chr2:26613074-26613322(+)$1	248	137	152	24.3000
d]eeeee]hhhhhhh	chr19:46029981-46030250(+)$1	269	88	103	21.6000

#DB
(..............	chr3:71007742-71007993(-)$1	1	75	90	34.3000
...............	chr5:42800247-42800493(-)$1	1	33	48	21.2000
...............	chr12:122240355-122240608(-)$1	1	84	99	22.4000
.....((((.(((((	chr2:68405925-68406175(-)$1	1	27	42	34.3000
((.((((........	chr6:119500600-119500856(-)$1	1	86	101	22.7000
...............	chr15:52842653-52842917(-)$1	1	88	103	27.9000
...............	chr17:66527617-66527899(+)$1	1	233	248	26.9000
)))))))))))....	chr17:55757043-55757296(+)$1	1	86	101	26.7000
...............	chr17:42268735-42268988(+)$1	1	88	103	26.6000
...............	chr6:137518678-137518931(-)$1	1	92	107	22.8000
...............	chr8:38068639-38068851(+)$1	1	81	96	34.3000
...............	chr6:32948897-32949152(+)$1	1	50	65	25.9000
...............	chr1:109855873-109856150(-)$1	1	50	65	30.4000
...............	chr6:47200147-47200382(-)$1	1	67	82	24.0000
....)))))))))))	chr12:106632260-106632476(-)$1	1	86	101	27.8000
((((((...((((((	chr12:124082139-124082381(+)$1	1	76	91	23.7000
........))).)))	chr21:34930172-34930423(+)$1	1	31	46	22.8000
........)))))))	chr12:106632201-106632460(-)$1	1	70	85	27.8000
))))........(((	chr15:39889226-39889471(+)$1	1	45	60	22.2000
..............)	chr6:30692185-30692429(+)$1	1	90	105	26.8000
)..............	chr11:130014434-130014663(+)$1	1	114	129	28.0000
)))))).))))((((	chr14:73566999-73567294(+)$1	1	88	103	22.3000
))))...))).....	chr6:128290554-128290793(-)$1	1	160	175	23.7000
(((............	chr9:124094913-124095187(+)$1	1	86	101	30.7000
).............(	chr21:45564841-45565131(+)$1	1	90	105	29.8000
((........((.((	chr16:3777287-3777569(-)$1	1	95	110	22.8000
.....((.(((((((	chr3:24021729-24021974(+)$1	1	27	42	23.1000
)))))))......))	chr12:124082307-124082549(+)$1	1	86	101	30.6000
(((((..........	chr11:130014463-130014681(+)$1	1	85	100	28.0000
)))))))).)))...	chr4:177253110-177253383(+)$1	1	88	103	30.4000
((......)))))..	chr11:64532613-64532871(-)$1	1	59	74	22.9000
(((.....(((((..	chr1:228286641-228286904(+)$1	1	58	73	22.3000
)))............	chr9:131456933-131457197(+)$1	1	78	93	30.4000
..(((((((((..((	chr12:1018403-1018645(+)$1	1	33	48	26.5000
((((((......(((	chr20:5170899-5171186(+)$1	1	86	101	30.4000
((.............	chr3:149087277-149087541(-)$1	1	88	103	31.2000
)))))))))...)))	chr6:33172042-33172308(+)$1	1	79	94	22.6000
...............	chr11:118471691-118471948(+)$1	1	58	73	23.4000
((.(((((((.((((	chr20:35412088-35412361(-)$1	1	120	135	22.5000
(((........((((	chr12:6679296-6679563(-)$1	1	80	95	23.2000
(....))).......	chr8:62415342-62415577(-)$1	1	89	104	23.6000
(.((((((.......	chr10:102123711-102123950(+)$1	1	163	178	34.3000
...............	chr11:2151636-2151887(-)$1	1	53	68	34.3000
((((((.((((((((	chr16:81745012-81745251(+)$1	1	55	70	23.3000
.....((((((((..	chr4:155491776-155492032(+)$1	1	189	204	24.6000
(((.(((((..((((	chr5:96369401-96369657(+)$1	1	80	95	21.6000
((((((((((.....	chr4:155525331-155525562(-)$1	1	31	46	23.8000
(((((.((((.....	chr17:70122311-70122582(+)$1	1	188	203	27.9000
.......))))))..	chr2:26613074-26613322(+)$1	1	137	152	24.3000
).))))).)))))))	chr19:46029981-46030250(+)$1	1	88	103	21.6000

#PSSM
U : 0.66	u : 0.16	C : 0.08	A : 0.08	G : 0.02	
U : 0.72	u : 0.16	C : 0.10	A : 0.02	
U : 0.74	u : 0.19	A : 0.04	G : 0.02	
U : 0.64	u : 0.18	C : 0.08	A : 0.06	c : 0.02	G : 0.02	
U : 0.68	u : 0.14	A : 0.06	G : 0.06	g : 0.04	a : 0.02	
U : 0.54	u : 0.18	C : 0.14	G : 0.10	c : 0.02	A : 0.02	
U : 0.66	u : 0.16	G : 0.08	g : 0.04	C : 0.04	A : 0.02	
U : 0.74	u : 0.19	A : 0.04	C : 0.02	
U : 0.64	u : 0.19	C : 0.08	A : 0.06	G : 0.02	
U : 0.68	u : 0.18	A : 0.06	G : 0.04	C : 0.02	g : 0.02	
U : 0.60	u : 0.18	G : 0.14	A : 0.06	a : 0.02	
U : 0.66	u : 0.18	C : 0.06	A : 0.04	G : 0.04	g : 0.02	
U : 0.74	u : 0.19	C : 0.04	G : 0.02	
U : 0.70	u : 0.18	C : 0.06	A : 0.04	c : 0.02	
U : 0.78	u : 0.18	G : 0.02	A : 0.02	

#score	1315.600000000001
#seq	50
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_CDS_m2_run2.nuc.txt

#NT
GGGCUGGAGG	chr2:85806059-85806352(+)$1	293	252	262	19.6226
GGGAUGCUGG	chr19:36145436-36145672(+)$1	236	162	172	14.6226
GGGGCGGUGG	chr19:10406936-10407193(+)$1	257	17	27	14.9056
GGGCUUGUGG	chr19:34890529-34890790(+)$1	261	51	61	16.8867
GGGCUGGCGG	chr3:51422724-51422965(+)$1	241	73	83	19.9056
GUGCUGGAGG	chr20:62331672-62331952(-)$1	280	195	205	15.5660
UGGCUGCUGG	chr17:79857806-79858160(+)$1	354	195	205	14.1509
GUGGUGGUGG	chr17:34171749-34172036(+)$1	287	157	167	14.5283
GGGCUCGAGG	chr15:79165248-79165501(+)$1	253	203	213	14.9056
gcgcuggugg	chr7:129710476-129710753(+)$1	277	62	72	17.3584
GGGCUGAGGG	chr12:6879242-6879478(+)$1	236	7	17	16.6981
GGGCUGGCCG	chr22:24963979-24964243(+)$1	264	126	136	15.5660
gggcugggcg	chr15:80215302-80215584(-)$1	282	121	131	16.5094
gggcgggugg	chr1:27022727-27022995(+)$1	268	59	69	18.1132
gggguggggg	chr5:133707210-133707431(+)$1	221	14	24	17.8301
GGGCAGCUGG	chr16:88786978-88787222(-)$1	244	217	227	14.7169
GGGCUGGCGG	chr19:14629044-14629306(-)$1	262	34	44	19.9056
GGGCGGGUGU	chr1:32670688-32670986(+)$1	298	224	234	13.6792
GGGCUGGCGG	chr19:1271878-1272096(+)$1	218	22	32	19.9056
UGGCUGGUGG	chr7:100466353-100466588(+)$1	235	196	206	17.7358
CGGCUGCUGG	chr16:1399220-1399525(-)$1	305	179	189	13.9622
GGGAUGGUGG	chr11:64084820-64085088(-)$1	268	201	211	18.2075
GGGCUGGCGC	chr5:180651175-180651438(+)$1	263	53	63	15.3773
GGACUGGUGG	chr19:38899392-38899751(+)$1	359	134	144	16.8867
aggcuggugg	chr5:177576698-177576942(-)$1	244	19	29	17.9245
GGGCUGGGCG	chr17:73774687-73774904(-)$1	217	41	51	16.5094
gggcgggcgg	chr3:45730800-45731091(+)$1	291	118	128	16.4150
GGGCAGGUGA	chr7:73111835-73112106(+)$1	271	183	193	13.7735
GGCCUGGGGG	chr3:9876819-9877103(+)$1	284	174	184	16.1320
GAGCUGGGGG	chr6:33258002-33258235(+)$1	233	166	176	16.7924
GGGCUGGGGG	chr19:55998133-55998407(+)$1	274	29	39	20.8490
GGGAUGGCGG	chr7:128502827-128503099(+)$1	272	128	138	16.5094
GGGCAGCUGG	chr15:91503029-91503313(+)$1	284	138	148	14.7169
GGGCUGGAGG	chr19:49611426-49611761(+)$1	335	163	173	19.6226
GGGGUGGGGG	chr17:38153915-38154176(+)$1	261	38	48	17.8301
GAgguggugg	chr15:38776747-38777033(+)$1	286	57	67	14.5283
AGGCUGGGGG	chr5:137682541-137682794(+)$1	253	178	188	17.1698
GGGCUGGGGG	chr22:39131021-39131306(-)$1	285	97	107	20.8490
AGGCCGGUGG	chr20:3765536-3765889(-)$1	353	203	213	14.2452
UGGCAGGUGG	chr1:44441881-44442140(+)$1	259	6	16	14.4339
GGGCUGGUGG	chr2:220074505-220074842(-)$1	337	7	17	21.6037
GGGGAGGUGG	chr16:18812664-18812950(-)$1	286	120	130	15.2830
GGGGUGCUGG	chr6:31696779-31697049(-)$1	270	246	256	14.9999
GAGCUGGGGG	chr6:33258038-33258313(+)$1	275	130	140	16.7924
aggcugcugg	chr1:197115423-197115672(-)$1	249	128	138	14.3396
gggcuggggg	chr19:35760378-35760641(+)$1	263	50	60	20.8490
GGGAUGGGGG	chr3:46963311-46963678(-)$1	367	192	202	17.4528
gggcugggag	chr22:29196186-29196421(-)$1	235	201	211	16.3207
GUGCAGGUGG	chr16:4393107-4393367(-)$1	260	108	118	14.2452
GGGCUGGGGU	chr16:88876729-88876953(-)$1	224	129	139	16.4150
gggguggggg	chr2:54197729-54198042(-)$1	313	63	73	17.8301
GGGUGGGUGG	chr19:54711164-54711400(+)$1	236	14	24	14.4339

#otherMatches

#Struct PSSM
nddddJJJJJ	chr19:580642-580858(+)$1	216	154	164	17.1698
JJJJJ}A}BB	chr2:85806059-85806352(+)$1	293	252	262	19.6226
ffffff]===	chr19:36145436-36145672(+)$1	236	162	172	14.6226
hhhhhsssss	chr19:10406936-10407193(+)$1	257	17	27	14.9056
fffffflllf	chr19:34890529-34890790(+)$1	261	51	61	16.8867
=========m	chr3:51422724-51422965(+)$1	241	73	83	19.9056
pppppbb]cc	chr20:62331672-62331952(-)$1	280	195	205	15.5660
ppcccbbfff	chr17:79857806-79858160(+)$1	354	195	205	14.1509
ggggg:eeee	chr17:34171749-34172036(+)$1	287	157	167	14.5283
}EEEEE::::	chr15:79165248-79165501(+)$1	253	203	213	14.9056
hh[ccc[bb[	chr7:129710476-129710753(+)$1	277	62	72	17.3584
DDDD:ggggg	chr12:6879242-6879478(+)$1	236	7	17	16.6981
ZEEEEECCCd	chr22:24963979-24964243(+)$1	264	126	136	15.5660
ccc!!ccca[	chr15:80215302-80215584(-)$1	282	121	131	16.5094
mmmmgggggg	chr1:27022727-27022995(+)$1	268	59	69	18.1132
mmdddd]bb]	chr5:133707210-133707431(+)$1	221	14	24	17.8301
CC}AYYGGGG	chr16:88786978-88787222(-)$1	244	217	227	14.7169
fffffmmmmf	chr19:14629044-14629306(-)$1	262	34	44	19.9056
DDDD}HHHHH	chr1:32670688-32670986(+)$1	298	224	234	13.6792
{CCCEEEEEd	chr19:1271878-1272096(+)$1	218	22	32	19.9056
na]eeeeeii	chr7:100466353-100466588(+)$1	235	196	206	17.7358
H}A:FFFFFF	chr16:1399220-1399525(-)$1	305	179	189	13.9622
DDD::ggggg	chr11:64084820-64085088(-)$1	268	201	211	18.2075
ndddd22ccc	chr5:180651175-180651438(+)$1	263	53	63	15.3773
GGGGG{A{BB	chr19:38899392-38899751(+)$1	359	134	144	16.8867
D{BB{EEEEE	chr5:177576698-177576942(-)$1	244	19	29	17.9245
hhhhhh[bb"	chr17:73774687-73774904(-)$1	217	41	51	16.5094
]eeeee]bb]	chr3:45730800-45731091(+)$1	291	118	128	16.4150
FFFFFF}BB:	chr7:73111835-73112106(+)$1	271	183	193	13.7735
gg:::ggggg	chr3:9876819-9877103(+)$1	284	174	184	16.1320
lllccc22bb	chr6:33258002-33258235(+)$1	233	166	176	16.7924
eeeee[eeee	chr19:55998133-55998407(+)$1	274	29	39	20.8490
==========	chr7:128502827-128503099(+)$1	272	128	138	16.5094
ffffffoooo	chr15:91503029-91503313(+)$1	284	138	148	14.7169
fffff:::::	chr19:49611426-49611761(+)$1	335	163	173	19.6226
fffff[ffff	chr17:38153915-38154176(+)$1	261	38	48	17.8301
:eeeee[bb[	chr15:38776747-38777033(+)$1	286	57	67	14.5283
mmmmgggggg	chr5:137682541-137682794(+)$1	253	178	188	17.1698
DDDDeeeee%	chr22:39131021-39131306(-)$1	285	97	107	20.8490
]a]eeeee22	chr20:3765536-3765889(-)$1	353	203	213	14.2452
[ccc####a[	chr1:44441881-44442140(+)$1	259	6	16	14.4339
CCCKKFFFFF	chr2:220074505-220074842(-)$1	337	7	17	21.6037
eeeee[dddd	chr16:18812664-18812950(-)$1	286	120	130	15.2830
CC}BB:bb[b	chr6:31696779-31697049(-)$1	270	246	256	14.9999
lllccc22bb	chr6:33258038-33258313(+)$1	275	130	140	16.7924
gggggGGGGG	chr1:197115423-197115672(-)$1	249	128	138	14.3396
ccc!!eeeee	chr19:35760378-35760641(+)$1	263	50	60	20.8490
bbb333eeee	chr3:46963311-46963678(-)$1	367	192	202	17.4528
GGffffffqq	chr22:29196186-29196421(-)$1	235	201	211	16.3207
333ffffff]	chr16:4393107-4393367(-)$1	260	108	118	14.2452
=========f	chr16:88876729-88876953(-)$1	224	129	139	16.4150
77a]ccc]dd	chr2:54197729-54198042(-)$1	313	63	73	17.8301
hhhhhfffff	chr19:54711164-54711400(+)$1	236	14	24	14.4339

#DB
.)))))))))	chr19:580642-580858(+)$1	1	154	164	17.1698
))))).).))	chr2:85806059-85806352(+)$1	1	252	262	19.6226
)))))).)))	chr19:36145436-36145672(+)$1	1	162	172	14.6226
(((((.....	chr19:10406936-10407193(+)$1	1	17	27	14.9056
((((((...)	chr19:34890529-34890790(+)$1	1	51	61	16.8867
(((((((((.	chr3:51422724-51422965(+)$1	1	73	83	19.9056
.....)).))	chr20:62331672-62331952(-)$1	1	195	205	15.5660
..))))))))	chr17:79857806-79858160(+)$1	1	195	205	14.1509
))))).((((	chr17:34171749-34172036(+)$1	1	157	167	14.5283
.)))))....	chr15:79165248-79165501(+)$1	1	203	213	14.9056
((.(((.((.	chr7:129710476-129710753(+)$1	1	62	72	17.3584
((((.(((((	chr12:6879242-6879478(+)$1	1	7	17	16.6981
.))))))))(	chr22:24963979-24964243(+)$1	1	126	136	15.5660
(((..((((.	chr15:80215302-80215584(-)$1	1	121	131	16.5094
....))))))	chr1:27022727-27022995(+)$1	1	59	69	18.1132
..)))).)).	chr5:133707210-133707431(+)$1	1	14	24	17.8301
)).)..))))	chr16:88786978-88787222(-)$1	1	217	227	14.7169
(((((....)	chr19:14629044-14629306(-)$1	1	34	44	19.9056
)))).)))))	chr1:32670688-32670986(+)$1	1	224	234	13.6792
.(((((((((	chr19:1271878-1272096(+)$1	1	22	32	19.9056
.).)))))))	chr7:100466353-100466588(+)$1	1	196	206	17.7358
).).((((((	chr16:1399220-1399525(-)$1	1	179	189	13.9622
)))..(((((	chr11:64084820-64085088(-)$1	1	201	211	18.2075
.))))..)))	chr5:180651175-180651438(+)$1	1	53	63	15.3773
(((((.(.((	chr19:38899392-38899751(+)$1	1	134	144	16.8867
(.((.(((((	chr5:177576698-177576942(-)$1	1	19	29	17.9245
((((((.((.	chr17:73774687-73774904(-)$1	1	41	51	16.5094
.))))).)).	chr3:45730800-45731091(+)$1	1	118	128	16.4150
)))))).)).	chr7:73111835-73112106(+)$1	1	183	193	13.7735
))...(((((	chr3:9876819-9877103(+)$1	1	174	184	16.1320
...)))..))	chr6:33258002-33258235(+)$1	1	166	176	16.7924
(((((.((((	chr19:55998133-55998407(+)$1	1	29	39	20.8490
((((((((((	chr7:128502827-128503099(+)$1	1	128	138	16.5094
((((((....	chr15:91503029-91503313(+)$1	1	138	148	14.7169
))))).....	chr19:49611426-49611761(+)$1	1	163	173	19.6226
(((((.((((	chr17:38153915-38154176(+)$1	1	38	48	17.8301
.(((((.((.	chr15:38776747-38777033(+)$1	1	57	67	14.5283
....))))))	chr5:137682541-137682794(+)$1	1	178	188	17.1698
))))(((((.	chr22:39131021-39131306(-)$1	1	97	107	20.8490
.).)))))..	chr20:3765536-3765889(-)$1	1	203	213	14.2452
.(((....(.	chr1:44441881-44442140(+)$1	1	6	16	14.4339
(((..(((((	chr2:220074505-220074842(-)$1	1	7	17	21.6037
(((((.((((	chr16:18812664-18812950(-)$1	1	120	130	15.2830
)).)).((.(	chr6:31696779-31697049(-)$1	1	246	256	14.9999
...)))..))	chr6:33258038-33258313(+)$1	1	130	140	16.7924
)))))(((((	chr1:197115423-197115672(-)$1	1	128	138	14.3396
(((..(((((	chr19:35760378-35760641(+)$1	1	50	60	20.8490
)))...))))	chr3:46963311-46963678(-)$1	1	192	202	17.4528
))((((((..	chr22:29196186-29196421(-)$1	1	201	211	16.3207
...)))))).	chr16:4393107-4393367(-)$1	1	108	118	14.2452
((((((((((	chr16:88876729-88876953(-)$1	1	129	139	16.4150
..).))).))	chr2:54197729-54198042(-)$1	1	63	73	17.8301
((((((((((	chr19:54711164-54711400(+)$1	1	14	24	14.4339

#PSSM
G : 0.67	g : 0.15	A : 0.05	U : 0.05	a : 0.03	C : 0.01	
G : 0.69	g : 0.16	U : 0.05	A : 0.05	c : 0.01	
G : 0.75	g : 0.20	A : 0.01	C : 0.01	
C : 0.60	c : 0.15	G : 0.09	A : 0.07	g : 0.05	U : 0.01	
U : 0.60	u : 0.16	A : 0.11	C : 0.03	g : 0.03	G : 0.03	
G : 0.75	g : 0.20	U : 0.01	C : 0.01	
G : 0.66	g : 0.18	C : 0.11	A : 0.01	c : 0.01	
U : 0.37	G : 0.22	C : 0.11	u : 0.09	g : 0.09	A : 0.07	c : 0.01	
G : 0.75	g : 0.16	C : 0.03	c : 0.01	a : 0.01	
G : 0.71	g : 0.20	U : 0.03	C : 0.01	A : 0.01	

#score	883.5849056603768
#seq	53
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_CDS_m1_run2.nuc.txt

#NT
UGAA	chr9:135205633-135205855(-)$1	222	19	23	12.0000
UGAA	chr6:87964390-87964597(+)$1	207	51	55	12.0000
UGAA	chr10:19884022-19884244(+)$1	222	128	132	12.0000
UGAA	chr3:42680422-42680726(+)$1	304	106	110	12.0000
UGAA	chr9:712378-712642(+)$1	264	46	50	12.0000
UGAA	chr1:39889715-39889967(+)$1	252	109	113	12.0000
UGAA	chr8:9605472-9605788(+)$1	316	141	145	12.0000
UGAA	chr9:135204918-135205193(-)$1	275	80	84	12.0000
UGAA	chr21:34132074-34132305(-)$1	231	25	29	12.0000
UGAA	chr5:79733379-79733625(+)$1	246	51	55	12.0000
UGAA	chr5:180682788-180683041(-)$1	253	66	70	12.0000
UGAA	chr14:39717221-39717436(+)$1	215	32	36	12.0000
UGAA	chr12:46320290-46320545(-)$1	255	40	44	12.0000
UGAA	chr2:71654222-71654551(+)$1	329	32	36	12.0000
UGAA	chr19:57325964-57326225(-)$1	261	32	36	12.0000
UGAA	chr8:94747638-94747883(-)$1	245	177	181	12.0000
UGAA	chr19:9677267-9677533(-)$1	266	8	12	12.0000
UGAA	chr11:108137800-108138084(+)$1	284	69	73	12.0000
ugaa	chr9:72892123-72892405(+)$1	282	67	71	12.0000
UGAA	chr6:64395652-64395902(+)$1	250	94	98	12.0000
UGAA	chr6:87968797-87969043(+)$1	246	33	37	12.0000
UGAA	chr1:16890384-16890647(-)$1	263	53	57	12.0000
UGAA	chr10:112361469-112361739(+)$1	270	78	82	12.0000
UGAA	chr17:61895037-61895320(+)$1	283	113	117	12.0000
UGAA	chr2:118577175-118577469(+)$1	294	68	72	12.0000
UGAA	chr15:62269210-62269469(-)$1	259	228	232	12.0000
UGAA	chr1:52301725-52301988(-)$1	263	27	31	12.0000
UGAA	chr7:91712445-91712667(+)$1	222	4	8	12.0000
UGAA	chr6:47512242-47512472(+)$1	230	154	158	12.0000
UGAA	chr20:34302134-34302348(-)$1	214	87	91	12.0000
UGAA	chr15:65983166-65983427(-)$1	261	11	15	12.0000
UGAA	chr16:2813682-2813932(+)$1	250	16	20	12.0000
UGAA	chr7:91630821-91631078(+)$1	257	11	15	12.0000
UGAA	chrX:106045887-106046278(+)$1	391	72	76	12.0000
UGAA	chr5:112177829-112178111(+)$1	282	10	14	12.0000
UGAA	chr14:32561100-32561382(+)$1	282	4	8	12.0000
UGAA	chr6:143094851-143095121(-)$1	270	70	74	12.0000
UGAA	chr16:239181-239439(-)$1	258	240	244	12.0000
UGAA	chr3:47162490-47162793(-)$1	303	18	22	12.0000
UGAA	chr9:95047999-95048219(-)$1	220	77	81	12.0000
UGAA	chr19:52394716-52395056(-)$1	340	96	100	12.0000
UGAA	chr10:38406626-38406881(+)$1	255	61	65	12.0000
UGAA	chr9:131347937-131348230(+)$1	293	4	8	12.0000
UGAA	chr6:87970284-87970538(+)$1	254	115	119	12.0000
UGAA	chr14:56103922-56104183(+)$1	261	24	28	12.0000
UGAA	chr18:6032140-6032382(-)$1	242	9	13	12.0000
UGAA	chr22:22319553-22319789(-)$1	236	91	95	12.0000
UGAA	chr10:123845044-123845330(+)$1	286	24	28	12.0000
UGAA	chr7:156743209-156743522(+)$1	313	160	164	12.0000
UGAA	chr6:144774819-144775105(+)$1	286	139	143	12.0000
UGAA	chr11:77330549-77330777(-)$1	228	102	106	12.0000
UGAA	chr4:40123378-40123628(+)$1	250	141	145	12.0000
UGAA	chr6:87970338-87970583(+)$1	245	61	65	12.0000
UGAA	chr19:23542343-23542587(-)$1	244	46	50	12.0000
UGAA	chr14:102550918-102551193(-)$1	275	171	175	12.0000
UGAA	chr16:2813935-2814161(+)$1	226	79	83	12.0000
UGAA	chr16:24802647-24802909(+)$1	262	48	52	12.0000
UGAA	chr14:31818985-31819281(-)$1	296	136	140	12.0000
UGAA	chr10:120809227-120809507(-)$1	280	79	83	12.0000
UGAA	chr2:170493754-170494042(+)$1	288	110	114	12.0000
UGAA	chr4:40133326-40133638(+)$1	312	65	69	12.0000
UGAA	chr17:64637372-64637657(+)$1	285	200	204	12.0000
UGAA	chr1:214813625-214813877(+)$1	252	7	11	12.0000
UGAA	chr1:39775858-39776165(+)$1	307	95	99	12.0000
UGAA	chr19:53571671-53571918(-)$1	247	3	7	12.0000
UGAA	chr1:46073390-46073629(+)$1	239	155	159	12.0000
UGAA	chr13:77852823-77853107(-)$1	284	81	85	12.0000
UGAA	chr17:38562627-38562844(-)$1	217	17	21	12.0000
UGAA	chr6:155154057-155154294(+)$1	237	6	10	12.0000
UGAA	chr19:40540668-40540931(-)$1	263	4	8	12.0000
UGAA	chr16:2814034-2814296(+)$1	262	199	203	12.0000
UGAA	chr7:91632303-91632601(+)$1	298	20	24	12.0000
UGAA	chr19:40540776-40541051(-)$1	275	40	44	12.0000
UGAA	chr1:15987258-15987519(+)$1	261	6	10	12.0000
UGAA	chr16:24802450-24802723(+)$1	273	245	249	12.0000
UGAA	chr1:214819634-214819890(+)$1	256	123	127	12.0000
UGAA	chr19:9677335-9677597(-)$1	262	72	76	12.0000
UGAA	chr6:144782244-144782461(+)$1	217	91	95	12.0000
UGAA	chr11:43436194-43436431(+)$1	237	27	31	12.0000
UGAA	chr17:42475787-42476034(-)$1	247	72	76	12.0000
UGAA	chr6:64394074-64394369(+)$1	295	66	70	12.0000
UGAA	chr17:78269408-78269670(+)$1	262	51	55	12.0000
UGAA	chr21:16339671-16339928(-)$1	257	107	111	12.0000
UGAA	chr2:152314306-152314576(+)$1	270	33	37	12.0000
UGAA	chr4:123857154-123857408(+)$1	254	20	24	12.0000
UGAA	chr6:111694051-111694310(-)$1	259	68	72	12.0000
UGAA	chr2:109088111-109088358(+)$1	247	34	38	12.0000
UGAA	chr1:203768889-203769126(+)$1	237	0	4	12.0000
UGAA	chr5:65349499-65349876(+)$1	377	154	158	12.0000
UGAA	chr3:42680591-42680828(+)$1	237	89	93	12.0000
UGAA	chr17:27003243-27003507(+)$1	264	6	10	12.0000
UGAA	chr7:91729037-91729280(+)$1	243	4	8	12.0000
UGAA	chr5:73930822-73931052(-)$1	230	145	149	12.0000
UGAA	chr22:22324547-22324820(-)$1	273	67	71	12.0000

#otherMatches

#Struct PSSM
ddd3	chr6:158923489-158923714(+)$1	225	33	37	12.0000
JJ::	chr9:135205633-135205855(-)$1	222	19	23	12.0000
cc::	chr6:87964390-87964597(+)$1	207	51	55	12.0000
ddd]	chr10:19884022-19884244(+)$1	222	128	132	12.0000
eeee	chr3:42680422-42680726(+)$1	304	106	110	12.0000
c[dd	chr9:712378-712642(+)$1	264	46	50	12.0000
4444	chr1:39889715-39889967(+)$1	252	109	113	12.0000
GGGG	chr8:9605472-9605788(+)$1	316	141	145	12.0000
]bb4	chr9:135204918-135205193(-)$1	275	80	84	12.0000
ee##	chr21:34132074-34132305(-)$1	231	25	29	12.0000
dddd	chr5:79733379-79733625(+)$1	246	51	55	12.0000
ff!!	chr5:180682788-180683041(-)$1	253	66	70	12.0000
JJJJ	chr14:39717221-39717436(+)$1	215	32	36	12.0000
::::	chr12:46320290-46320545(-)$1	255	40	44	12.0000
meee	chr2:71654222-71654551(+)$1	329	32	36	12.0000
eee!	chr19:57325964-57326225(-)$1	261	32	36	12.0000
ffff	chr8:94747638-94747883(-)$1	245	177	181	12.0000
ffff	chr19:9677267-9677533(-)$1	266	8	12	12.0000
ee::	chr11:108137800-108138084(+)$1	284	69	73	12.0000
iiii	chr9:72892123-72892405(+)$1	282	67	71	12.0000
LHHH	chr6:64395652-64395902(+)$1	250	94	98	12.0000
cccm	chr6:87968797-87969043(+)$1	246	33	37	12.0000
qqqq	chr1:16890384-16890647(-)$1	263	53	57	12.0000
{EEE	chr10:112361469-112361739(+)$1	270	78	82	12.0000
rrrr	chr17:61895037-61895320(+)$1	283	113	117	12.0000
bqqq	chr2:118577175-118577469(+)$1	294	68	72	12.0000
YYFF	chr15:62269210-62269469(-)$1	259	228	232	12.0000
cccm	chr1:52301725-52301988(-)$1	263	27	31	12.0000
CC{D	chr7:91712445-91712667(+)$1	222	4	8	12.0000
f22e	chr6:47512242-47512472(+)$1	230	154	158	12.0000
IIII	chr20:34302134-34302348(-)$1	214	87	91	12.0000
EMMM	chr15:65983166-65983427(-)$1	261	11	15	12.0000
c!!c	chr16:2813682-2813932(+)$1	250	16	20	12.0000
!ddd	chr7:91630821-91631078(+)$1	257	11	15	12.0000
c]ee	chrX:106045887-106046278(+)$1	391	72	76	12.0000
crrr	chr5:112177829-112178111(+)$1	282	10	14	12.0000
IIII	chr14:32561100-32561382(+)$1	282	4	8	12.0000
dddd	chr6:143094851-143095121(-)$1	270	70	74	12.0000
dddd	chr16:239181-239439(-)$1	258	240	244	12.0000
==!!	chr3:47162490-47162793(-)$1	303	18	22	12.0000
dddd	chr9:95047999-95048219(-)$1	220	77	81	12.0000
ee::	chr19:52394716-52395056(-)$1	340	96	100	12.0000
ffff	chr10:38406626-38406881(+)$1	255	61	65	12.0000
c!!e	chr9:131347937-131348230(+)$1	293	4	8	12.0000
HHHH	chr6:87970284-87970538(+)$1	254	115	119	12.0000
CCCM	chr14:56103922-56104183(+)$1	261	24	28	12.0000
::::	chr18:6032140-6032382(-)$1	242	9	13	12.0000
cc44	chr22:22319553-22319789(-)$1	236	91	95	12.0000
DDDK	chr10:123845044-123845330(+)$1	286	24	28	12.0000
((((	chr7:156743209-156743522(+)$1	313	160	164	12.0000
iiii	chr6:144774819-144775105(+)$1	286	139	143	12.0000
b]cc	chr11:77330549-77330777(-)$1	228	102	106	12.0000
{DDD	chr4:40123378-40123628(+)$1	250	141	145	12.0000
HHHH	chr6:87970338-87970583(+)$1	245	61	65	12.0000
ffff	chr19:23542343-23542587(-)$1	244	46	50	12.0000
oooo	chr14:102550918-102551193(-)$1	275	171	175	12.0000
::::	chr16:2813935-2814161(+)$1	226	79	83	12.0000
JJJJ	chr16:24802647-24802909(+)$1	262	48	52	12.0000
dooo	chr14:31818985-31819281(-)$1	296	136	140	12.0000
ccc:	chr10:120809227-120809507(-)$1	280	79	83	12.0000
ccc:	chr2:170493754-170494042(+)$1	288	110	114	12.0000
[eee	chr4:40133326-40133638(+)$1	312	65	69	12.0000
[ddd	chr17:64637372-64637657(+)$1	285	200	204	12.0000
::::	chr1:214813625-214813877(+)$1	252	7	11	12.0000
fff#	chr1:39775858-39776165(+)$1	307	95	99	12.0000
hhhh	chr19:53571671-53571918(-)$1	247	3	7	12.0000
ff::	chr1:46073390-46073629(+)$1	239	155	159	12.0000
KAKK	chr13:77852823-77853107(-)$1	284	81	85	12.0000
====	chr17:38562627-38562844(-)$1	217	17	21	12.0000
EEE{	chr6:155154057-155154294(+)$1	237	6	10	12.0000
FFFF	chr19:40540668-40540931(-)$1	263	4	8	12.0000
dd]b	chr16:2814034-2814296(+)$1	262	199	203	12.0000
eeem	chr7:91632303-91632601(+)$1	298	20	24	12.0000
eee!	chr19:40540776-40541051(-)$1	275	40	44	12.0000
EEKK	chr1:15987258-15987519(+)$1	261	6	10	12.0000
gggg	chr16:24802450-24802723(+)$1	273	245	249	12.0000
:::d	chr1:214819634-214819890(+)$1	256	123	127	12.0000
eeee	chr19:9677335-9677597(-)$1	262	72	76	12.0000
####	chr6:144782244-144782461(+)$1	217	91	95	12.0000
iii6	chr11:43436194-43436431(+)$1	237	27	31	12.0000
]ddd	chr17:42475787-42476034(-)$1	247	72	76	12.0000
booo	chr6:64394074-64394369(+)$1	295	66	70	12.0000
b444	chr17:78269408-78269670(+)$1	262	51	55	12.0000
bb]c	chr21:16339671-16339928(-)$1	257	107	111	12.0000
ii^^	chr2:152314306-152314576(+)$1	270	33	37	12.0000
HHHH	chr4:123857154-123857408(+)$1	254	20	24	12.0000
dddd	chr6:111694051-111694310(-)$1	259	68	72	12.0000
nnnn	chr2:109088111-109088358(+)$1	247	34	38	12.0000
:CCC	chr1:203768889-203769126(+)$1	237	0	4	12.0000
EE{E	chr5:65349499-65349876(+)$1	377	154	158	12.0000
dd$$	chr3:42680591-42680828(+)$1	237	89	93	12.0000
::::	chr17:27003243-27003507(+)$1	264	6	10	12.0000
::::	chr7:91729037-91729280(+)$1	243	4	8	12.0000
b###	chr5:73930822-73931052(-)$1	230	145	149	12.0000
]ddd	chr22:22324547-22324820(-)$1	273	67	71	12.0000

#DB
))).	chr6:158923489-158923714(+)$1	1	33	37	12.0000
((..	chr9:135205633-135205855(-)$1	1	19	23	12.0000
))..	chr6:87964390-87964597(+)$1	1	51	55	12.0000
))).	chr10:19884022-19884244(+)$1	1	128	132	12.0000
((((	chr3:42680422-42680726(+)$1	1	106	110	12.0000
(.((	chr9:712378-712642(+)$1	1	46	50	12.0000
....	chr1:39889715-39889967(+)$1	1	109	113	12.0000
))))	chr8:9605472-9605788(+)$1	1	141	145	12.0000
.)).	chr9:135204918-135205193(-)$1	1	80	84	12.0000
((..	chr21:34132074-34132305(-)$1	1	25	29	12.0000
((((	chr5:79733379-79733625(+)$1	1	51	55	12.0000
((..	chr5:180682788-180683041(-)$1	1	66	70	12.0000
((((	chr14:39717221-39717436(+)$1	1	32	36	12.0000
....	chr12:46320290-46320545(-)$1	1	40	44	12.0000
.)))	chr2:71654222-71654551(+)$1	1	32	36	12.0000
(((.	chr19:57325964-57326225(-)$1	1	32	36	12.0000
))))	chr8:94747638-94747883(-)$1	1	177	181	12.0000
((((	chr19:9677267-9677533(-)$1	1	8	12	12.0000
))..	chr11:108137800-108138084(+)$1	1	69	73	12.0000
((((	chr9:72892123-72892405(+)$1	1	67	71	12.0000
.(((	chr6:64395652-64395902(+)$1	1	94	98	12.0000
(((.	chr6:87968797-87969043(+)$1	1	33	37	12.0000
....	chr1:16890384-16890647(-)$1	1	53	57	12.0000
.(((	chr10:112361469-112361739(+)$1	1	78	82	12.0000
....	chr17:61895037-61895320(+)$1	1	113	117	12.0000
(...	chr2:118577175-118577469(+)$1	1	68	72	12.0000
..))	chr15:62269210-62269469(-)$1	1	228	232	12.0000
(((.	chr1:52301725-52301988(-)$1	1	27	31	12.0000
((.(	chr7:91712445-91712667(+)$1	1	4	8	12.0000
)..)	chr6:47512242-47512472(+)$1	1	154	158	12.0000
((((	chr20:34302134-34302348(-)$1	1	87	91	12.0000
(...	chr15:65983166-65983427(-)$1	1	11	15	12.0000
(..(	chr16:2813682-2813932(+)$1	1	16	20	12.0000
.(((	chr7:91630821-91631078(+)$1	1	11	15	12.0000
).))	chrX:106045887-106046278(+)$1	1	72	76	12.0000
(...	chr5:112177829-112178111(+)$1	1	10	14	12.0000
((((	chr14:32561100-32561382(+)$1	1	4	8	12.0000
))))	chr6:143094851-143095121(-)$1	1	70	74	12.0000
))))	chr16:239181-239439(-)$1	1	240	244	12.0000
((..	chr3:47162490-47162793(-)$1	1	18	22	12.0000
((((	chr9:95047999-95048219(-)$1	1	77	81	12.0000
))..	chr19:52394716-52395056(-)$1	1	96	100	12.0000
((((	chr10:38406626-38406881(+)$1	1	61	65	12.0000
(..(	chr9:131347937-131348230(+)$1	1	4	8	12.0000
((((	chr6:87970284-87970538(+)$1	1	115	119	12.0000
(((.	chr14:56103922-56104183(+)$1	1	24	28	12.0000
....	chr18:6032140-6032382(-)$1	1	9	13	12.0000
))..	chr22:22319553-22319789(-)$1	1	91	95	12.0000
(((.	chr10:123845044-123845330(+)$1	1	24	28	12.0000
....	chr7:156743209-156743522(+)$1	1	160	164	12.0000
))))	chr6:144774819-144775105(+)$1	1	139	143	12.0000
).))	chr11:77330549-77330777(-)$1	1	102	106	12.0000
.(((	chr4:40123378-40123628(+)$1	1	141	145	12.0000
((((	chr6:87970338-87970583(+)$1	1	61	65	12.0000
((((	chr19:23542343-23542587(-)$1	1	46	50	12.0000
....	chr14:102550918-102551193(-)$1	1	171	175	12.0000
....	chr16:2813935-2814161(+)$1	1	79	83	12.0000
((((	chr16:24802647-24802909(+)$1	1	48	52	12.0000
(...	chr14:31818985-31819281(-)$1	1	136	140	12.0000
))).	chr10:120809227-120809507(-)$1	1	79	83	12.0000
))).	chr2:170493754-170494042(+)$1	1	110	114	12.0000
.(((	chr4:40133326-40133638(+)$1	1	65	69	12.0000
.(((	chr17:64637372-64637657(+)$1	1	200	204	12.0000
....	chr1:214813625-214813877(+)$1	1	7	11	12.0000
(((.	chr1:39775858-39776165(+)$1	1	95	99	12.0000
((((	chr19:53571671-53571918(-)$1	1	3	7	12.0000
))..	chr1:46073390-46073629(+)$1	1	155	159	12.0000
.(..	chr13:77852823-77853107(-)$1	1	81	85	12.0000
((((	chr17:38562627-38562844(-)$1	1	17	21	12.0000
(((.	chr6:155154057-155154294(+)$1	1	6	10	12.0000
((((	chr19:40540668-40540931(-)$1	1	4	8	12.0000
)).)	chr16:2814034-2814296(+)$1	1	199	203	12.0000
(((.	chr7:91632303-91632601(+)$1	1	20	24	12.0000
(((.	chr19:40540776-40541051(-)$1	1	40	44	12.0000
((..	chr1:15987258-15987519(+)$1	1	6	10	12.0000
))))	chr16:24802450-24802723(+)$1	1	245	249	12.0000
...(	chr1:214819634-214819890(+)$1	1	123	127	12.0000
((((	chr19:9677335-9677597(-)$1	1	72	76	12.0000
....	chr6:144782244-144782461(+)$1	1	91	95	12.0000
))).	chr11:43436194-43436431(+)$1	1	27	31	12.0000
.)))	chr17:42475787-42476034(-)$1	1	72	76	12.0000
(...	chr6:64394074-64394369(+)$1	1	66	70	12.0000
)...	chr17:78269408-78269670(+)$1	1	51	55	12.0000
)).)	chr21:16339671-16339928(-)$1	1	107	111	12.0000
((..	chr2:152314306-152314576(+)$1	1	33	37	12.0000
((((	chr4:123857154-123857408(+)$1	1	20	24	12.0000
))))	chr6:111694051-111694310(-)$1	1	68	72	12.0000
....	chr2:109088111-109088358(+)$1	1	34	38	12.0000
.(((	chr1:203768889-203769126(+)$1	1	0	4	12.0000
((.(	chr5:65349499-65349876(+)$1	1	154	158	12.0000
((..	chr3:42680591-42680828(+)$1	1	89	93	12.0000
....	chr17:27003243-27003507(+)$1	1	6	10	12.0000
....	chr7:91729037-91729280(+)$1	1	4	8	12.0000
(...	chr5:73930822-73931052(-)$1	1	145	149	12.0000
.)))	chr22:22324547-22324820(-)$1	1	67	71	12.0000

#PSSM
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
A : 0.98	a : 0.01	
A : 0.98	a : 0.01	

#score	1140.0000000000002
#seq	95
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_transcript_m1_run2.nuc.txt

#NT
GCUG	chr6:119500512-119500759(-)$1	247	154	158	11.9999
gcug	chr4:1289465-1289744(+)$1	279	229	233	11.9999
GCUG	chr2:20647306-20647552(+)$1	246	81	85	11.9999
GCUG	chr20:48808770-48809032(+)$1	262	184	188	11.9999
gcug	chr2:10476340-10476560(+)$1	220	15	19	11.9999
GCUG	chr12:125270551-125270850(-)$1	299	99	103	11.9999
GCUG	chr1:44053411-44053649(+)$1	238	14	18	11.9999
GCUG	chr14:69847080-69847336(-)$1	256	70	74	11.9999
GCUG	chr17:4848920-4849209(-)$1	289	124	128	11.9999
GCUG	chr21:46282894-46283102(-)$1	208	4	8	11.9999
GCUG	chr6:32948860-32949114(+)$1	254	14	18	11.9999
gcug	chr22:33155435-33155753(-)$1	318	6	10	11.9999
GCUG	chr4:166419235-166419535(+)$1	300	2	6	11.9999
GCUG	chr20:30252263-30252510(-)$1	247	24	28	11.9999
GCUG	chr22:29196303-29196563(-)$1	260	6	10	11.9999
GCUG	chr13:113977514-113977725(+)$1	211	6	10	11.9999
GCUG	chr2:171573458-171573682(+)$1	224	26	30	11.9999
GCUG	chr12:131522434-131522724(+)$1	290	262	266	11.9999
GCUG	chr17:70117191-70117462(+)$1	271	153	157	11.9999
GCUG	chrX:153664617-153664859(+)$1	242	38	42	11.9999
GCUG	chr14:24114354-24114623(+)$1	269	122	126	11.9999
GCUG	chr1:234742494-234742748(-)$1	254	138	142	11.9999
GCUG	chr16:3103984-3104270(-)$1	286	281	285	11.9999
GCUG	chr21:46283051-46283304(-)$1	253	71	75	11.9999
GCUG	chr13:113977480-113977714(+)$1	234	40	44	11.9999
GCUG	chr2:240287547-240287818(-)$1	271	151	155	11.9999
GCUG	chr3:186338925-186339180(+)$1	255	176	180	11.9999
GCUG	chr4:1805047-1805325(+)$1	278	43	47	11.9999
gcug	chr7:158344019-158344231(-)$1	212	35	39	11.9999
GCUG	chr7:1193529-1193804(-)$1	275	127	131	11.9999
GCUG	chr7:75615844-75616116(+)$1	272	209	213	11.9999
GCUG	chr7:158344788-158345048(-)$1	260	0	4	11.9999
GCUG	chr22:38203104-38203326(+)$1	222	0	4	11.9999
GCUG	chr3:184052904-184053150(+)$1	246	132	136	11.9999
GCUG	chrX:132669902-132670156(-)$1	254	27	31	11.9999
GCUG	chr19:18390494-18390736(-)$1	242	210	214	11.9999
GCUG	chr19:1257840-1258109(+)$1	269	104	108	11.9999
GCUG	chr1:20980053-20980330(-)$1	277	39	43	11.9999
GCUG	chr16:18802939-18803249(-)$1	310	27	31	11.9999
GCUG	chr21:27253443-27253705(-)$1	262	146	150	11.9999
GCUG	chr1:44053282-44053581(+)$1	299	74	78	11.9999
GCUG	chr2:220047689-220047938(+)$1	249	28	32	11.9999
GCUG	chr10:424688-424940(-)$1	252	57	61	11.9999
GCUG	chr15:23051229-23051522(-)$1	293	19	23	11.9999
GCUG	chr2:219128810-219129111(-)$1	301	111	115	11.9999
GCUG	chr17:70117292-70117544(+)$1	252	52	56	11.9999
GCUG	chr16:87865237-87865466(-)$1	229	144	148	11.9999
GCUG	chr3:5025976-5026230(+)$1	254	113	117	11.9999
GCUG	chr16:50613645-50613869(+)$1	224	84	88	11.9999
GCUG	chr6:7586189-7586437(+)$1	248	77	81	11.9999
GCUG	chr12:66359808-66360071(+)$1	263	91	95	11.9999
GCUG	chr7:158343892-158344107(-)$1	215	22	26	11.9999
GCUG	chr1:988462-988720(+)$1	258	82	86	11.9999
GCUG	chr5:42800025-42800279(-)$1	254	88	92	11.9999
GCUG	chr2:43451277-43451515(-)$1	238	134	138	11.9999
GCUG	chr7:100172941-100173218(-)$1	277	2	6	11.9999
GCUG	chr10:73576961-73577192(-)$1	231	145	149	11.9999
GCUG	chr7:103112166-103112450(-)$1	284	271	275	11.9999
GCUG	chr18:55989648-55989890(+)$1	242	114	118	11.9999
GCUG	chr4:1290243-1290502(+)$1	259	38	42	11.9999
GCUG	chr12:115121456-115121695(-)$1	239	61	65	11.9999
GCUG	chr17:76168566-76168832(+)$1	266	1	5	11.9999
GCUG	chr20:30193925-30194175(+)$1	250	123	127	11.9999
GCUG	chr3:58117665-58117925(+)$1	260	98	102	11.9999
GCUG	chr16:50612884-50613117(+)$1	233	0	4	11.9999
GCUG	chr16:50615604-50615912(+)$1	308	24	28	11.9999
GCUG	chr16:87863683-87863993(-)$1	310	80	84	11.9999
GCUG	chr5:43291024-43291289(-)$1	265	30	34	11.9999
GCUG	chr2:96850973-96851219(-)$1	246	212	216	11.9999
GCUG	chr6:30712038-30712284(-)$1	246	5	9	11.9999
GCUG	chr11:61555678-61556011(+)$1	333	44	48	11.9999
GCUG	chr4:1290124-1290443(+)$1	319	157	161	11.9999
gcug	chr8:9629663-9629924(+)$1	261	106	110	11.9999
GCUG	chr1:169101377-169101671(+)$1	294	8	12	11.9999
GCUG	chr2:240287142-240287390(-)$1	248	153	157	11.9999
GCUG	chr2:10476083-10476338(+)$1	255	24	28	11.9999
GCUG	chr14:101201256-101201478(+)$1	222	114	118	11.9999
GCUG	chr17:38078019-38078282(-)$1	263	135	139	11.9999
GCUG	chr19:54378384-54378648(+)$1	264	46	50	11.9999
GCUG	chr7:94298794-94299063(+)$1	269	118	122	11.9999
GCUG	chr1:43392208-43392450(-)$1	242	120	124	11.9999
GCUG	chr20:61915166-61915472(+)$1	306	22	26	11.9999
GCUG	chr10:73576294-73576540(-)$1	246	117	121	11.9999

#otherMatches

#Struct PSSM
###i	chr8:126034278-126034511(+)$1	233	166	170	11.9999
cc]a	chr6:119500512-119500759(-)$1	247	154	158	11.9999
c]cc	chr4:1289465-1289744(+)$1	279	229	233	11.9999
!eee	chr2:20647306-20647552(+)$1	246	81	85	11.9999
ffff	chr20:48808770-48809032(+)$1	262	184	188	11.9999
::::	chr2:10476340-10476560(+)$1	220	15	19	11.9999
gggg	chr12:125270551-125270850(-)$1	299	99	103	11.9999
:::e	chr1:44053411-44053649(+)$1	238	14	18	11.9999
oodd	chr14:69847080-69847336(-)$1	256	70	74	11.9999
::::	chr17:4848920-4849209(-)$1	289	124	128	11.9999
bb[b	chr21:46282894-46283102(-)$1	208	4	8	11.9999
E:ff	chr6:32948860-32949114(+)$1	254	14	18	11.9999
:AKK	chr22:33155435-33155753(-)$1	318	6	10	11.9999
FFFF	chr4:166419235-166419535(+)$1	300	2	6	11.9999
GGGh	chr20:30252263-30252510(-)$1	247	24	28	11.9999
ffff	chr22:29196303-29196563(-)$1	260	6	10	11.9999
GGGG	chr13:113977514-113977725(+)$1	211	6	10	11.9999
ddff	chr2:171573458-171573682(+)$1	224	26	30	11.9999
CCCC	chr12:131522434-131522724(+)$1	290	262	266	11.9999
ccc!	chr17:70117191-70117462(+)$1	271	153	157	11.9999
ee""	chrX:153664617-153664859(+)$1	242	38	42	11.9999
fffm	chr14:24114354-24114623(+)$1	269	122	126	11.9999
dd[c	chr1:234742494-234742748(-)$1	254	138	142	11.9999
::::	chr16:3103984-3104270(-)$1	286	281	285	11.9999
ffll	chr21:46283051-46283304(-)$1	253	71	75	11.9999
==::	chr13:113977480-113977714(+)$1	234	40	44	11.9999
hhhh	chr2:240287547-240287818(-)$1	271	151	155	11.9999
eeee	chr3:186338925-186339180(+)$1	255	176	180	11.9999
{GGG	chr4:1805047-1805325(+)$1	278	43	47	11.9999
A{FF	chr7:158344019-158344231(-)$1	212	35	39	11.9999
eee'	chr7:1193529-1193804(-)$1	275	127	131	11.9999
ddd[	chr7:75615844-75616116(+)$1	272	209	213	11.9999
::dd	chr7:158344788-158345048(-)$1	260	0	4	11.9999
:::D	chr22:38203104-38203326(+)$1	222	0	4	11.9999
GGG}	chr3:184052904-184053150(+)$1	246	132	136	11.9999
ffff	chrX:132669902-132670156(-)$1	254	27	31	11.9999
CYYC	chr19:18390494-18390736(-)$1	242	210	214	11.9999
dddd	chr19:1257840-1258109(+)$1	269	104	108	11.9999
BB{B	chr1:20980053-20980330(-)$1	277	39	43	11.9999
HHHH	chr16:18802939-18803249(-)$1	310	27	31	11.9999
qddd	chr21:27253443-27253705(-)$1	262	146	150	11.9999
JJJJ	chr1:44053282-44053581(+)$1	299	74	78	11.9999
:::B	chr2:220047689-220047938(+)$1	249	28	32	11.9999
ee[d	chr10:424688-424940(-)$1	252	57	61	11.9999
::::	chr15:23051229-23051522(-)$1	293	19	23	11.9999
ccco	chr2:219128810-219129111(-)$1	301	111	115	11.9999
ccc!	chr17:70117292-70117544(+)$1	252	52	56	11.9999
ffff	chr16:87865237-87865466(-)$1	229	144	148	11.9999
ffff	chr3:5025976-5026230(+)$1	254	113	117	11.9999
e22f	chr16:50613645-50613869(+)$1	224	84	88	11.9999
ffff	chr6:7586189-7586437(+)$1	248	77	81	11.9999
::::	chr12:66359808-66360071(+)$1	263	91	95	11.9999
FFFF	chr7:158343892-158344107(-)$1	215	22	26	11.9999
cc""	chr1:988462-988720(+)$1	258	82	86	11.9999
>>>>	chr5:42800025-42800279(-)$1	254	88	92	11.9999
nnnc	chr2:43451277-43451515(-)$1	238	134	138	11.9999
cc[b	chr7:100172941-100173218(-)$1	277	2	6	11.9999
c[gg	chr10:73576961-73577192(-)$1	231	145	149	11.9999
FFFF	chr7:103112166-103112450(-)$1	284	271	275	11.9999
fffg	chr18:55989648-55989890(+)$1	242	114	118	11.9999
dd]c	chr4:1290243-1290502(+)$1	259	38	42	11.9999
[bbq	chr12:115121456-115121695(-)$1	239	61	65	11.9999
EEEE	chr17:76168566-76168832(+)$1	266	1	5	11.9999
pppp	chr20:30193925-30194175(+)$1	250	123	127	11.9999
dddb	chr3:58117665-58117925(+)$1	260	98	102	11.9999
dddd	chr16:50612884-50613117(+)$1	233	0	4	11.9999
GGGG	chr16:50615604-50615912(+)$1	308	24	28	11.9999
f555	chr16:87863683-87863993(-)$1	310	80	84	11.9999
bba[	chr5:43291024-43291289(-)$1	265	30	34	11.9999
dddd	chr2:96850973-96851219(-)$1	246	212	216	11.9999
EE{B	chr6:30712038-30712284(-)$1	246	5	9	11.9999
eeee	chr11:61555678-61556011(+)$1	333	44	48	11.9999
dd]c	chr4:1290124-1290443(+)$1	319	157	161	11.9999
DDDD	chr8:9629663-9629924(+)$1	261	106	110	11.9999
G{JJ	chr1:169101377-169101671(+)$1	294	8	12	11.9999
eeee	chr2:240287142-240287390(-)$1	248	153	157	11.9999
bbee	chr2:10476083-10476338(+)$1	255	24	28	11.9999
f[cc	chr14:101201256-101201478(+)$1	222	114	118	11.9999
]a22	chr17:38078019-38078282(-)$1	263	135	139	11.9999
ccee	chr19:54378384-54378648(+)$1	264	46	50	11.9999
EEEE	chr7:94298794-94299063(+)$1	269	118	122	11.9999
ffff	chr1:43392208-43392450(-)$1	242	120	124	11.9999
EEEK	chr20:61915166-61915472(+)$1	306	22	26	11.9999
bbpp	chr10:73576294-73576540(-)$1	246	117	121	11.9999

#DB
...(	chr8:126034278-126034511(+)$1	1	166	170	11.9999
)).)	chr6:119500512-119500759(-)$1	1	154	158	11.9999
).))	chr4:1289465-1289744(+)$1	1	229	233	11.9999
.(((	chr2:20647306-20647552(+)$1	1	81	85	11.9999
((((	chr20:48808770-48809032(+)$1	1	184	188	11.9999
....	chr2:10476340-10476560(+)$1	1	15	19	11.9999
))))	chr12:125270551-125270850(-)$1	1	99	103	11.9999
...(	chr1:44053411-44053649(+)$1	1	14	18	11.9999
..))	chr14:69847080-69847336(-)$1	1	70	74	11.9999
....	chr17:4848920-4849209(-)$1	1	124	128	11.9999
((.(	chr21:46282894-46283102(-)$1	1	4	8	11.9999
(.((	chr6:32948860-32949114(+)$1	1	14	18	11.9999
.(..	chr22:33155435-33155753(-)$1	1	6	10	11.9999
((((	chr4:166419235-166419535(+)$1	1	2	6	11.9999
((((	chr20:30252263-30252510(-)$1	1	24	28	11.9999
((((	chr22:29196303-29196563(-)$1	1	6	10	11.9999
((((	chr13:113977514-113977725(+)$1	1	6	10	11.9999
))((	chr2:171573458-171573682(+)$1	1	26	30	11.9999
))))	chr12:131522434-131522724(+)$1	1	262	266	11.9999
(((.	chr17:70117191-70117462(+)$1	1	153	157	11.9999
((..	chrX:153664617-153664859(+)$1	1	38	42	11.9999
(((.	chr14:24114354-24114623(+)$1	1	122	126	11.9999
((.(	chr1:234742494-234742748(-)$1	1	138	142	11.9999
....	chr16:3103984-3104270(-)$1	1	281	285	11.9999
((..	chr21:46283051-46283304(-)$1	1	71	75	11.9999
))..	chr13:113977480-113977714(+)$1	1	40	44	11.9999
((((	chr2:240287547-240287818(-)$1	1	151	155	11.9999
((((	chr3:186338925-186339180(+)$1	1	176	180	11.9999
.(((	chr4:1805047-1805325(+)$1	1	43	47	11.9999
(.((	chr7:158344019-158344231(-)$1	1	35	39	11.9999
(((.	chr7:1193529-1193804(-)$1	1	127	131	11.9999
(((.	chr7:75615844-75616116(+)$1	1	209	213	11.9999
..((	chr7:158344788-158345048(-)$1	1	0	4	11.9999
...(	chr22:38203104-38203326(+)$1	1	0	4	11.9999
))).	chr3:184052904-184053150(+)$1	1	132	136	11.9999
((((	chrX:132669902-132670156(-)$1	1	27	31	11.9999
)..)	chr19:18390494-18390736(-)$1	1	210	214	11.9999
((((	chr19:1257840-1258109(+)$1	1	104	108	11.9999
((.(	chr1:20980053-20980330(-)$1	1	39	43	11.9999
((((	chr16:18802939-18803249(-)$1	1	27	31	11.9999
.)))	chr21:27253443-27253705(-)$1	1	146	150	11.9999
((((	chr1:44053282-44053581(+)$1	1	74	78	11.9999
...(	chr2:220047689-220047938(+)$1	1	28	32	11.9999
((.(	chr10:424688-424940(-)$1	1	57	61	11.9999
....	chr15:23051229-23051522(-)$1	1	19	23	11.9999
(((.	chr2:219128810-219129111(-)$1	1	111	115	11.9999
(((.	chr17:70117292-70117544(+)$1	1	52	56	11.9999
))))	chr16:87865237-87865466(-)$1	1	144	148	11.9999
))))	chr3:5025976-5026230(+)$1	1	113	117	11.9999
)..)	chr16:50613645-50613869(+)$1	1	84	88	11.9999
))))	chr6:7586189-7586437(+)$1	1	77	81	11.9999
....	chr12:66359808-66360071(+)$1	1	91	95	11.9999
((((	chr7:158343892-158344107(-)$1	1	22	26	11.9999
((..	chr1:988462-988720(+)$1	1	82	86	11.9999
....	chr5:42800025-42800279(-)$1	1	88	92	11.9999
...)	chr2:43451277-43451515(-)$1	1	134	138	11.9999
((.(	chr7:100172941-100173218(-)$1	1	2	6	11.9999
(.((	chr10:73576961-73577192(-)$1	1	145	149	11.9999
))))	chr7:103112166-103112450(-)$1	1	271	275	11.9999
((((	chr18:55989648-55989890(+)$1	1	114	118	11.9999
)).)	chr4:1290243-1290502(+)$1	1	38	42	11.9999
.((.	chr12:115121456-115121695(-)$1	1	61	65	11.9999
((((	chr17:76168566-76168832(+)$1	1	1	5	11.9999
....	chr20:30193925-30194175(+)$1	1	123	127	11.9999
((((	chr3:58117665-58117925(+)$1	1	98	102	11.9999
((((	chr16:50612884-50613117(+)$1	1	0	4	11.9999
((((	chr16:50615604-50615912(+)$1	1	24	28	11.9999
)...	chr16:87863683-87863993(-)$1	1	80	84	11.9999
(((.	chr5:43291024-43291289(-)$1	1	30	34	11.9999
((((	chr2:96850973-96851219(-)$1	1	212	216	11.9999
((.(	chr6:30712038-30712284(-)$1	1	5	9	11.9999
))))	chr11:61555678-61556011(+)$1	1	44	48	11.9999
)).)	chr4:1290124-1290443(+)$1	1	157	161	11.9999
((((	chr8:9629663-9629924(+)$1	1	106	110	11.9999
(.((	chr1:169101377-169101671(+)$1	1	8	12	11.9999
))))	chr2:240287142-240287390(-)$1	1	153	157	11.9999
((((	chr2:10476083-10476338(+)$1	1	24	28	11.9999
(.((	chr14:101201256-101201478(+)$1	1	114	118	11.9999
.)..	chr17:38078019-38078282(-)$1	1	135	139	11.9999
((((	chr19:54378384-54378648(+)$1	1	46	50	11.9999
((((	chr7:94298794-94299063(+)$1	1	118	122	11.9999
))))	chr1:43392208-43392450(-)$1	1	120	124	11.9999
(((.	chr20:61915166-61915472(+)$1	1	22	26	11.9999
((..	chr10:73576294-73576540(-)$1	1	117	121	11.9999

#PSSM
G : 0.94	g : 0.05	
C : 0.94	c : 0.05	
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	

#score	1007.9999999999998
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_UTR_m2_run1.nuc.txt

#NT
UUUUUCUU	chr16:4492912-4493202(+)$1	290	22	30	15.5254
UUUUUCCC	chr3:119170012-119170292(-)$1	280	104	112	16.5423
UGUUUCCU	chrX:100653399-100653667(-)$1	268	68	76	15.4406
UUUCUCCU	chr19:34717200-34717455(+)$1	255	42	50	15.8644
UUUUUCCU	chr3:88107218-88107523(-)$1	305	117	125	19.9322
UUUUUCCC	chr13:37583810-37584068(-)$1	258	102	110	16.5423
CUUUUCCU	chr6:112395918-112396164(-)$1	246	173	181	15.8644
UUUUUCAU	chr3:49060594-49060878(+)$1	284	209	217	15.3559
UUUUUCCU	chr10:121336106-121336357(-)$1	251	85	93	19.9322
UCUUUCCU	chr14:21969091-21969400(-)$1	309	172	180	15.3559
UGUUUCCU	chr17:74730511-74730759(-)$1	248	187	195	15.4406
UUUCUCCU	chr5:38886244-38886517(+)$1	273	193	201	15.8644
UUUUGCCU	chr12:51634533-51634824(+)$1	291	94	102	15.9491
UUUUUCCU	chr14:32625511-32625781(+)$1	270	94	102	19.9322
GUUUUCCU	chr11:62342441-62342724(-)$1	283	123	131	15.9491
uuuuuucu	chr9:100434842-100435104(+)$1	262	231	239	15.6101
UUUCUCCU	chr1:154242874-154243135(+)$1	261	96	104	15.8644
UUUUUCUU	chr14:103801863-103802140(+)$1	277	114	122	15.5254
UUUUUCUU	chr17:19238590-19238851(+)$1	261	23	31	15.5254
UUUUUCCU	chr14:99872798-99873048(-)$1	250	28	36	19.9322
UUCUUCCU	chr16:81015359-81015605(-)$1	246	110	118	15.2711
UUUUUCCU	chr16:8734876-8735141(+)$1	265	56	64	19.9322
UUUUUCCU	chr17:40962633-40962878(-)$1	245	103	111	19.9322
UUUUUCCC	chr7:27867237-27867496(+)$1	259	107	115	16.5423
UUUUGCCU	chr1:226050412-226050676(-)$1	264	97	105	15.9491
UUUUUCCA	chr11:62502737-62503014(+)$1	277	229	237	16.1186
UUUUUUCU	chr14:67831287-67831537(+)$1	250	93	101	15.6101
UUUUUCCA	chr19:35499908-35500157(+)$1	249	74	82	16.1186
UUUUUCCU	chr1:26197048-26197326(-)$1	278	93	101	19.9322
UUUUUGCU	chr14:96998719-96998978(+)$1	259	104	112	15.6949
UUUGUCCU	chr2:3461268-3461549(+)$1	281	94	102	15.6949
UUUUUACU	chr17:74730899-74731158(-)$1	259	40	48	15.5254
UUUUUCCU	chr13:103457535-103457793(+)$1	258	146	154	19.9322
AUUUUCCU	chr5:172742330-172742599(-)$1	269	16	24	15.6949
GUUUUCCU	chr14:24569070-24569373(+)$1	303	89	97	15.9491
GUUUUCCU	chr13:41936746-41937012(+)$1	266	92	100	15.9491
GUUUUCCU	chr3:10167828-10168094(+)$1	266	104	112	15.9491
UUUGUCCU	chr19:19102195-19102456(-)$1	261	42	50	15.6949
UUUUUCCU	chr3:122471374-122471640(-)$1	266	29	37	19.9322
UUUUGCCU	chr2:136261926-136262182(-)$1	256	205	213	15.9491
UUUUGCCU	chr17:62510439-62510710(+)$1	271	88	96	15.9491
uuuuuccu	chr14:35498383-35498673(+)$1	290	129	137	19.9322
UUUUUCCA	chr4:107115765-107116052(-)$1	287	126	134	16.1186
UUUUUCCU	chr16:70542554-70542853(-)$1	299	134	142	19.9322
UUUUUGCU	chr2:102774048-102774307(+)$1	259	90	98	15.6949
UUUUUCCC	chr2:208461521-208461783(+)$1	262	90	98	16.5423
UUUAUCCU	chr2:8822842-8823129(+)$1	287	110	118	15.6101
UUUUGCCU	chr12:53836367-53836601(+)$1	234	86	94	15.9491
CUUUUCCU	chr10:75009045-75009296(-)$1	251	102	110	15.8644
uuuuugcu	chr19:58825995-58826265(+)$1	270	105	113	15.6949
UAUUUCCU	chr2:198367819-198368082(+)$1	263	116	124	15.3559
UUUUUCCC	chr9:99265890-99266191(-)$1	301	105	113	16.5423
UUCUUCCU	chr2:70524481-70524726(-)$1	245	98	106	15.2711
CUUUUCCU	chr12:53447434-53447695(+)$1	261	98	106	15.8644
uuucuccu	chr16:74339481-74339724(-)$1	243	99	107	15.8644
UUUUUCCC	chr19:54972703-54972964(+)$1	261	102	110	16.5423
UUUUUCCC	chr11:47843218-47843493(-)$1	275	98	106	16.5423
UUUUGCCU	chr19:56173741-56174003(+)$1	262	227	235	15.9491

#otherMatches

#Struct PSSM
ffffpppp	chr2:233659347-233659601(+)$1	254	97	105	16.5423
mmffffff	chr16:4492912-4493202(+)$1	290	22	30	15.5254
ee::::::	chr3:119170012-119170292(-)$1	280	104	112	16.5423
gg''''''	chrX:100653399-100653667(-)$1	268	68	76	15.4406
LLBBKKEE	chr19:34717200-34717455(+)$1	255	42	50	15.8644
}CCC}BB:	chr3:88107218-88107523(-)$1	305	117	125	19.9322
oooobb::	chr13:37583810-37584068(-)$1	258	102	110	16.5423
CCC:::::	chr6:112395918-112396164(-)$1	246	173	181	15.8644
b^^^^^^^	chr3:49060594-49060878(+)$1	284	209	217	15.3559
eee!!ccc	chr10:121336106-121336357(-)$1	251	85	93	19.9322
}JJJJJJJ	chr14:21969091-21969400(-)$1	309	172	180	15.3559
]ccc]ccc	chr17:74730511-74730759(-)$1	248	187	195	15.4406
EEEE}DDD	chr5:38886244-38886517(+)$1	273	193	201	15.8644
2dddd333	chr12:51634533-51634824(+)$1	291	94	102	15.9491
f:::::::	chr14:32625511-32625781(+)$1	270	94	102	19.9322
iiiii444	chr11:62342441-62342724(-)$1	283	123	131	15.9491
::::::::	chr9:100434842-100435104(+)$1	262	231	239	15.6101
::::::::	chr1:154242874-154243135(+)$1	261	96	104	15.8644
g&&&&&&&	chr14:103801863-103802140(+)$1	277	114	122	15.5254
nnffffff	chr17:19238590-19238851(+)$1	261	23	31	15.5254
qqqddddd	chr14:99872798-99873048(-)$1	250	28	36	19.9322
!!eeeee!	chr16:81015359-81015605(-)$1	246	110	118	15.2711
e"""gggg	chr16:8734876-8735141(+)$1	265	56	64	19.9322
333=====	chr17:40962633-40962878(-)$1	245	103	111	19.9322
:ffffffm	chr7:27867237-27867496(+)$1	259	107	115	16.5423
nnndddd:	chr1:226050412-226050676(-)$1	264	97	105	15.9491
qqqdddd:	chr11:62502737-62503014(+)$1	277	229	237	16.1186
44eeeee]	chr14:67831287-67831537(+)$1	250	93	101	15.6101
hh22cccE	chr19:35499908-35500157(+)$1	249	74	82	16.1186
^^^^^^^^	chr1:26197048-26197326(-)$1	278	93	101	19.9322
::::::::	chr14:96998719-96998978(+)$1	259	104	112	15.6949
ee[ccc[d	chr2:3461268-3461549(+)$1	281	94	102	15.6949
''''''''	chr17:74730899-74731158(-)$1	259	40	48	15.5254
hhhhmmmm	chr13:103457535-103457793(+)$1	258	146	154	19.9322
eeeessss	chr5:172742330-172742599(-)$1	269	16	24	15.6949
bb333bb6	chr14:24569070-24569373(+)$1	303	89	97	15.9491
fffff!!b	chr13:41936746-41937012(+)$1	266	92	100	15.9491
fffff444	chr3:10167828-10168094(+)$1	266	104	112	15.9491
ggFFFFFF	chr19:19102195-19102456(-)$1	261	42	50	15.6949
:::::eee	chr3:122471374-122471640(-)$1	266	29	37	19.9322
hh22bb]c	chr2:136261926-136262182(-)$1	256	205	213	15.9491
BYYCCC::	chr17:62510439-62510710(+)$1	271	88	96	15.9491
::::::::	chr14:35498383-35498673(+)$1	290	129	137	19.9322
::::::::	chr4:107115765-107116052(-)$1	287	126	134	16.1186
hhuuuuuu	chr16:70542554-70542853(-)$1	299	134	142	19.9322
gg333bb]	chr2:102774048-102774307(+)$1	259	90	98	15.6949
ffffff[b	chr2:208461521-208461783(+)$1	262	90	98	16.5423
::::::::	chr2:8822842-8823129(+)$1	287	110	118	15.6101
^^^^^^^^	chr12:53836367-53836601(+)$1	234	86	94	15.9491
::::::::	chr10:75009045-75009296(-)$1	251	102	110	15.8644
ggggggg+	chr19:58825995-58826265(+)$1	270	105	113	15.6949
nnnndddd	chr2:198367819-198368082(+)$1	263	116	124	15.3559
+eeeee!!	chr9:99265890-99266191(-)$1	301	105	113	16.5423
PDDDD{BB	chr2:70524481-70524726(-)$1	245	98	106	15.2711
CCLLLA{F	chr12:53447434-53447695(+)$1	261	98	106	15.8644
::::::::	chr16:74339481-74339724(-)$1	243	99	107	15.8644
::::::::	chr19:54972703-54972964(+)$1	261	102	110	16.5423
>>>>>>>>	chr11:47843218-47843493(-)$1	275	98	106	16.5423
____BB__	chr19:56173741-56174003(+)$1	262	227	235	15.9491

#DB
((((....	chr2:233659347-233659601(+)$1	1	97	105	16.5423
..))))))	chr16:4492912-4493202(+)$1	1	22	30	15.5254
))......	chr3:119170012-119170292(-)$1	1	104	112	16.5423
((......	chrX:100653399-100653667(-)$1	1	68	76	15.4406
..((..((	chr19:34717200-34717455(+)$1	1	42	50	15.8644
.))).)).	chr3:88107218-88107523(-)$1	1	117	125	19.9322
....))..	chr13:37583810-37584068(-)$1	1	102	110	16.5423
))).....	chr6:112395918-112396164(-)$1	1	173	181	15.8644
(.......	chr3:49060594-49060878(+)$1	1	209	217	15.3559
(((..(((	chr10:121336106-121336357(-)$1	1	85	93	19.9322
.)))))))	chr14:21969091-21969400(-)$1	1	172	180	15.3559
.))).)))	chr17:74730511-74730759(-)$1	1	187	195	15.4406
)))).)))	chr5:38886244-38886517(+)$1	1	193	201	15.8644
.))))...	chr12:51634533-51634824(+)$1	1	94	102	15.9491
).......	chr14:32625511-32625781(+)$1	1	94	102	19.9322
)))))...	chr11:62342441-62342724(-)$1	1	123	131	15.9491
........	chr9:100434842-100435104(+)$1	1	231	239	15.6101
........	chr1:154242874-154243135(+)$1	1	96	104	15.8644
(.......	chr14:103801863-103802140(+)$1	1	114	122	15.5254
..))))))	chr17:19238590-19238851(+)$1	1	23	31	15.5254
...))))(	chr14:99872798-99873048(-)$1	1	28	36	19.9322
..(((((.	chr16:81015359-81015605(-)$1	1	110	118	15.2711
(...((((	chr16:8734876-8735141(+)$1	1	56	64	19.9322
...)))))	chr17:40962633-40962878(-)$1	1	103	111	19.9322
.((((((.	chr7:27867237-27867496(+)$1	1	107	115	16.5423
...)))).	chr1:226050412-226050676(-)$1	1	97	105	15.9491
...)))).	chr11:62502737-62503014(+)$1	1	229	237	16.1186
..))))).	chr14:67831287-67831537(+)$1	1	93	101	15.6101
))..)))(	chr19:35499908-35500157(+)$1	1	74	82	16.1186
........	chr1:26197048-26197326(-)$1	1	93	101	19.9322
........	chr14:96998719-96998978(+)$1	1	104	112	15.6949
((.(((.(	chr2:3461268-3461549(+)$1	1	94	102	15.6949
........	chr17:74730899-74731158(-)$1	1	40	48	15.5254
((((....	chr13:103457535-103457793(+)$1	1	146	154	19.9322
((((....	chr5:172742330-172742599(-)$1	1	16	24	15.6949
))...)).	chr14:24569070-24569373(+)$1	1	89	97	15.9491
(((((..(	chr13:41936746-41937012(+)$1	1	92	100	15.9491
)))))...	chr3:10167828-10168094(+)$1	1	104	112	15.9491
))((((((	chr19:19102195-19102456(-)$1	1	42	50	15.6949
.....(((	chr3:122471374-122471640(-)$1	1	29	37	19.9322
))..)).)	chr2:136261926-136262182(-)$1	1	205	213	15.9491
)..)))..	chr17:62510439-62510710(+)$1	1	88	96	15.9491
........	chr14:35498383-35498673(+)$1	1	129	137	19.9322
........	chr4:107115765-107116052(-)$1	1	126	134	16.1186
((......	chr16:70542554-70542853(-)$1	1	134	142	19.9322
))...)).	chr2:102774048-102774307(+)$1	1	90	98	15.6949
((((((.(	chr2:208461521-208461783(+)$1	1	90	98	16.5423
........	chr2:8822842-8823129(+)$1	1	110	118	15.6101
........	chr12:53836367-53836601(+)$1	1	86	94	15.9491
........	chr10:75009045-75009296(-)$1	1	102	110	15.8644
(((((((.	chr19:58825995-58826265(+)$1	1	105	113	15.6949
....))))	chr2:198367819-198368082(+)$1	1	116	124	15.3559
.(((((..	chr9:99265890-99266191(-)$1	1	105	113	16.5423
.((((.((	chr2:70524481-70524726(-)$1	1	98	106	15.2711
((...(.(	chr12:53447434-53447695(+)$1	1	98	106	15.8644
........	chr16:74339481-74339724(-)$1	1	99	107	15.8644
........	chr19:54972703-54972964(+)$1	1	102	110	16.5423
........	chr11:47843218-47843493(-)$1	1	98	106	16.5423
....))..	chr19:56173741-56174003(+)$1	1	227	235	15.9491

#PSSM
U : 0.79	G : 0.06	u : 0.06	C : 0.05	A : 0.01	
U : 0.86	u : 0.06	G : 0.03	C : 0.01	A : 0.01	
U : 0.89	u : 0.06	C : 0.03	
U : 0.83	C : 0.05	u : 0.05	G : 0.03	A : 0.01	c : 0.01	
U : 0.83	G : 0.10	u : 0.06	
C : 0.86	G : 0.03	c : 0.03	u : 0.01	U : 0.01	A : 0.01	g : 0.01	
C : 0.86	c : 0.06	U : 0.05	A : 0.01	
U : 0.74	C : 0.13	u : 0.06	A : 0.05	

#score	981.0847457627109
#seq	59
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_transcript_m3_run1.nuc.txt

#NT
GGACUUGAAgcgcccggccgcggcaagccccgcccucggcgcgcccccgcguccgcgcgcgcUCCUCGGGUCUGCGCGGAGCCGGCGUCGGCGCGCGCUUGGGCGCCUGGCGAAGACCGAGAGAGGCUGGCGGGAUCUCAGCGGCGCGGCCGCGGAACCUGAGGCGGUCUGGGGCGGCGGCGCUCCGGCUCUGAAGGGCUCCAGCCAAACGGAGCCCGCGGCCAAACGGUGCCUGCGGUGCCUGAGCUGAGUGAGGCCGAGGCCGGGAGGCCGUGCCCGGAGGUGAGCGUcccggggccgcgccgcguccggcggggugagggcggggcggggcggUCGCCUGCCGGCUGGGGCCGAGGG	chr2:24163226-24163621(+)$1	395	10	370	338.3333
GUCGCCCCUGGAUUCGGAcccgcccccucgcgccccgccccguccccgcccuccccaccgcccucugcGGGAGCCGGGCAGCUGCAGCGGAGCCGCGGAGCGGGCGGCGGGGCCCAGGCUGUGCGCUUGGGGAGCGCGGAAUGUGAGGCUUGGCGGGCCGCAGCACGCUCGGACGGGCCAGGGGCGGCGACCCCUCGCGGACGCCCGGCUGCGCGCCGGGCCGGGGACUUGCCCUUGCACGCUCCCUGCGCCCUCCAGCUCGCCGGCGGGACCAUGAAGAAGUUCUCUCGGAUGCCCAAGUCGGAGggcggcagcggcggcggagcggcggguggcggggcuggcggggccggggccggg	chr4:79697410-79697796(+)$1	386	14	374	339.9999

#otherMatches

#Struct PSSM
ddddeeeeellleeeee4444ddddcccmmmmccc:ggggggg[ddddbbccc%%%%%%ffffff^^^^^^^^^^^^^^^^^^ffffffccc]bb]dddd333gggggggDDDD{BBCCC{CCC{DDDD{AKKBB{DDDD{DDDD{CCCDDDD{BB{A:eeeeeddddtttttttttttdddd]eeeee:ccc!!bb[dddd[a[cccccc[ggggggguuuuuuuuuuuuggggggg]ccc]ccca]dddd]bb22ccceeeee[a!!ccc"""ggggggglllggggggg333ccc]aeeeeeA}BB}DDDDddddqqqqqqqqddddffffff!!aooooooa22ffffff:::CCC	chr5:133561322-133561747(-)$1	425	27	387	338.3333
ff[apppppppaffffff]a]ccc::JJJJJJJJJJJJ{A{DDDD::::::hhhhhhhh[ddddllldddd]hhhhhhhhFFFFFF{BBeeeee[ammmma]eeeeecccooooooccc:::BB}FFFFFF:DDDDMMMMJJJJJJJJJJJ{CCCPPPPPPPDDDD{BBA{EEEEE{DDDDKKGGGGGGG:::::gggggggqqqqqqqqggggggg:eeeee!!bbfffffflllffffff88888888bb22eeeee:GGGGGGGYYDDDDEEEEE}A~~~~BB}DDDDCCC}JJJJJJJJJJJDDDDDDDD}A}JJJJJJJJJJJJ::gggggggccc[bb[eeeee[ddddmmmmd	chr2:24163226-24163621(+)$1	395	10	370	338.3333
cccvvvvvvvvvvvvvccceeeee]dddd]cccDDDDEEEEE{GGGGGGGKKDDDD{FFFFFF{DDDDMMMMDDDDMMMMEEEEE::::dddd[a[a!!dddd[a[bb[eeeeebb[a[a[ggggggglllggggggg]a]a]bb]eeeee]bb]a]dddd22a]addddCCC{DDDDEEEEECCCDDDD::bbmmmmbb::gggggggnnnnnggggggg:cccoooooocccDDDD}CCC}EEEEE}DDDDCCC:dddd[eeeeeccc####cccccclllccc]ccc4444ccc22eeeee]dddd:EEEEEYYDDDDZZZDDDD}FFFFFF}DDDDYYGGGGGGG}EEEEE}DDDD	chr4:79697410-79697796(+)$1	386	14	374	339.9999

#DB
(((((((((...)))))....))))(((....))).(((((((.(((((((((......((((((..................))))))))).)).))))...)))))))((((.(((((.(((.((((.(..((.((((.((((.(((((((.((.(.(((((((((...........)))).))))).(((..((.((((.(.((((((.(((((((............))))))).))).)))).)))).))..)))(((((.(..(((...(((((((...)))))))...))).))))))).)).))))((((........))))((((((..(......)..))))))...)))	chr5:133561322-133561747(-)$1	1	27	387	338.3333
((.(.......))))))).).)))..((((((((((((.(.((((......((((((((.((((...)))).))))))))((((((.(((((((.(....).)))))(((......)))...)).)))))).((((....(((((((((((.(((.......((((.(((.(((((.((((..(((((((.....(((((((........))))))).(((((..((((((((...))))))........))..))))).)))))))..))))))))).)....)).))))))).))))))))))))))))))).).))))))))))))..((((((((((.((.(((((.((((....)	chr2:24163226-24163621(+)$1	1	10	370	338.3333
(((.............)))))))).)))).)))(((((((((.(((((((..((((.((((((.((((....((((....(((((....((((.(.(..((((.(.((.(((((((.(.(.(((((((...))))))).).).)).))))).)).).))))..).)))))(((.((((((((((((((((..((....))..(((((((.....))))))).(((......))))))).))).))))).))))))).((((.((((((((....((((((...))).)))....)))..))))).)))).)))))..))))...)))).)))))).))))..))))))).))))).))))	chr4:79697410-79697796(+)$1	1	14	374	339.9999

#PSSM
G : 1.00	
C : 0.33	G : 0.33	U : 0.33	
A : 0.66	C : 0.33	
G : 0.66	C : 0.33	
C : 0.66	U : 0.33	
G : 0.33	U : 0.33	C : 0.33	
G : 0.66	C : 0.33	
C : 0.66	A : 0.33	
C : 0.33	A : 0.33	U : 0.33	
G : 0.66	g : 0.33	
A : 0.33	c : 0.33	G : 0.33	
C : 0.33	g : 0.33	A : 0.33	
G : 0.33	c : 0.33	U : 0.33	
G : 0.33	c : 0.33	U : 0.33	
C : 0.66	c : 0.33	
C : 0.33	g : 0.33	G : 0.33	
G : 0.66	g : 0.33	
A : 0.66	c : 0.33	
c : 0.66	G : 0.33	
U : 0.33	g : 0.33	c : 0.33	
c : 0.66	A : 0.33	
g : 0.66	C : 0.33	
U : 0.33	g : 0.33	c : 0.33	
c : 0.66	G : 0.33	
C : 0.33	a : 0.33	c : 0.33	
G : 0.33	a : 0.33	c : 0.33	
G : 0.33	g : 0.33	c : 0.33	
U : 0.33	c : 0.33	u : 0.33	
c : 0.66	G : 0.33	
A : 0.33	c : 0.33	g : 0.33	
c : 0.66	G : 0.33	
g : 0.66	A : 0.33	
c : 0.66	G : 0.33	
c : 0.66	C : 0.33	
c : 0.66	C : 0.33	
A : 0.33	u : 0.33	c : 0.33	
G : 0.33	c : 0.33	g : 0.33	
C : 0.33	g : 0.33	c : 0.33	
G : 0.33	g : 0.33	c : 0.33	
c : 0.66	G : 0.33	
G : 0.33	g : 0.33	c : 0.33	
C : 0.33	c : 0.33	g : 0.33	
C : 0.33	g : 0.33	u : 0.33	
c : 0.66	A : 0.33	
c : 0.66	G : 0.33	
c : 0.66	C : 0.33	
c : 0.66	G : 0.33	
C : 0.33	c : 0.33	g : 0.33	
C : 0.33	g : 0.33	c : 0.33	
c : 0.66	A : 0.33	
G : 0.33	g : 0.33	c : 0.33	
u : 0.66	C : 0.33	
c : 0.66	C : 0.33	
c : 0.66	U : 0.33	
C : 0.33	g : 0.33	c : 0.33	
c : 0.66	A : 0.33	
A : 0.33	g : 0.33	a : 0.33	
c : 0.66	C : 0.33	
A : 0.33	g : 0.33	c : 0.33	
G : 0.33	c : 0.33	g : 0.33	
C : 0.33	g : 0.33	c : 0.33	
c : 0.66	C : 0.33	
G : 0.33	U : 0.33	c : 0.33	
C : 0.66	u : 0.33	
C : 0.66	c : 0.33	
A : 0.33	U : 0.33	u : 0.33	
G : 0.33	C : 0.33	g : 0.33	
A : 0.33	G : 0.33	c : 0.33	
G : 0.66	A : 0.33	
G : 1.00	
U : 0.66	G : 0.33	
A : 0.66	C : 0.33	
C : 0.33	U : 0.33	G : 0.33	
A : 0.33	G : 0.33	C : 0.33	
C : 1.00	
G : 1.00	
A : 0.33	C : 0.33	G : 0.33	
G : 1.00	
G : 0.66	C : 0.33	
A : 1.00	
G : 0.66	A : 0.33	
C : 1.00	
C : 0.66	U : 0.33	
G : 1.00	
G : 0.66	C : 0.33	
C : 0.66	A : 0.33	
G : 1.00	
G : 0.33	U : 0.33	C : 0.33	
C : 0.66	G : 0.33	
G : 1.00	
G : 0.66	A : 0.33	
C : 0.66	G : 0.33	
G : 0.66	C : 0.33	
C : 0.66	U : 0.33	
G : 1.00	
C : 0.66	U : 0.33	
G : 1.00	
C : 0.66	G : 0.33	
G : 0.33	U : 0.33	A : 0.33	
U : 0.66	G : 0.33	
G : 0.66	C : 0.33	
G : 0.66	U : 0.33	
G : 0.66	A : 0.33	
G : 0.66	C : 0.33	
G : 0.66	C : 0.33	
C : 0.66	G : 0.33	
C : 0.66	G : 0.33	
C : 0.66	U : 0.33	
G : 1.00	
G : 0.66	U : 0.33	
G : 0.66	C : 0.33	
G : 0.66	U : 0.33	
G : 0.33	A : 0.33	C : 0.33	
C : 0.66	A : 0.33	
G : 0.66	C : 0.33	
A : 0.66	G : 0.33	
G : 0.66	C : 0.33	
C : 0.66	G : 0.33	
G : 0.66	C : 0.33	
G : 0.33	A : 0.33	U : 0.33	
G : 0.66	C : 0.33	
G : 0.33	A : 0.33	U : 0.33	
G : 1.00	
C : 0.66	A : 0.33	
G : 1.00	
C : 0.66	G : 0.33	
G : 0.33	C : 0.33	U : 0.33	
U : 0.66	G : 0.33	
G : 1.00	
G : 0.66	A : 0.33	
G : 0.66	C : 0.33	
G : 0.66	C : 0.33	
A : 0.66	G : 0.33	
G : 1.00	
C : 0.66	A : 0.33	
G : 0.66	U : 0.33	
C : 1.00	
G : 0.66	U : 0.33	
G : 0.66	C : 0.33	
A : 1.00	
G : 0.66	A : 0.33	
C : 0.66	U : 0.33	
G : 1.00	
G : 0.66	U : 0.33	
C : 0.66	G : 0.33	
A : 0.66	G : 0.33	
G : 0.66	C : 0.33	
G : 0.66	C : 0.33	
C : 0.66	G : 0.33	
G : 0.33	C : 0.33	U : 0.33	
G : 0.33	C : 0.33	U : 0.33	
G : 0.66	C : 0.33	
U : 0.33	C : 0.33	G : 0.33	
G : 0.66	C : 0.33	
G : 1.00	
G : 0.66	A : 0.33	
G : 0.66	A : 0.33	
C : 1.00	
C : 0.66	G : 0.33	
G : 0.66	U : 0.33	
G : 0.66	C : 0.33	
A : 0.66	U : 0.33	
G : 1.00	
G : 0.66	C : 0.33	
C : 0.66	A : 0.33	
A : 0.33	G : 0.33	C : 0.33	
G : 0.66	U : 0.33	
C : 0.66	U : 0.33	
A : 0.33	C : 0.33	U : 0.33	
U : 0.66	C : 0.33	
G : 1.00	
G : 1.00	
A : 0.66	G : 0.33	
C : 0.66	G : 0.33	
G : 0.66	C : 0.33	
G : 0.66	A : 0.33	
G : 1.00	
C : 0.66	A : 0.33	
A : 0.33	G : 0.33	C : 0.33	
G : 0.66	A : 0.33	
G : 0.66	C : 0.33	
G : 0.66	U : 0.33	
G : 0.66	C : 0.33	
U : 0.66	G : 0.33	
C : 0.66	U : 0.33	
C : 0.66	G : 0.33	
G : 0.66	A : 0.33	
C : 0.66	G : 0.33	
C : 0.66	G : 0.33	
A : 0.66	U : 0.33	
C : 0.66	A : 0.33	
G : 0.33	U : 0.33	C : 0.33	
G : 0.66	C : 0.33	
A : 0.66	C : 0.33	
G : 0.33	A : 0.33	U : 0.33	
C : 0.66	G : 0.33	
G : 0.66	U : 0.33	
G : 0.66	C : 0.33	
G : 0.66	C : 0.33	
A : 0.33	U : 0.33	G : 0.33	
C : 0.66	A : 0.33	
C : 1.00	
A : 0.66	G : 0.33	
G : 0.66	C : 0.33	
C : 0.66	U : 0.33	
C : 0.66	G : 0.33	
G : 0.66	A : 0.33	
A : 0.66	G : 0.33	
U : 0.33	A : 0.33	C : 0.33	
C : 0.66	U : 0.33	
G : 1.00	
A : 0.33	G : 0.33	C : 0.33	
G : 0.66	A : 0.33	
C : 0.66	G : 0.33	
A : 0.33	C : 0.33	G : 0.33	
C : 0.66	G : 0.33	
C : 1.00	
G : 0.66	U : 0.33	
G : 0.66	C : 0.33	
G : 0.66	A : 0.33	
A : 0.33	G : 0.33	C : 0.33	
C : 1.00	
G : 0.66	C : 0.33	
A : 0.66	G : 0.33	
G : 0.66	A : 0.33	
U : 0.33	A : 0.33	G : 0.33	
G : 0.33	C : 0.33	A : 0.33	
C : 0.66	G : 0.33	
A : 0.33	G : 0.33	U : 0.33	
U : 0.66	A : 0.33	
G : 1.00	
C : 1.00	
C : 0.66	A : 0.33	
G : 0.33	U : 0.33	C : 0.33	
C : 0.33	G : 0.33	U : 0.33	
U : 0.66	C : 0.33	
G : 1.00	
U : 0.33	G : 0.33	C : 0.33	
C : 0.33	U : 0.33	A : 0.33	
C : 0.66	G : 0.33	
G : 0.66	C : 0.33	
C : 0.66	A : 0.33	
U : 0.66	G : 0.33	
U : 0.33	G : 0.33	C : 0.33	
C : 0.66	A : 0.33	
C : 0.66	G : 0.33	
C : 0.66	U : 0.33	
A : 0.33	U : 0.33	G : 0.33	
G : 0.66	C : 0.33	
G : 0.66	A : 0.33	
U : 0.33	G : 0.33	C : 0.33	
C : 0.66	U : 0.33	
A : 0.33	G : 0.33	C : 0.33	
A : 0.66	U : 0.33	
G : 0.66	C : 0.33	
A : 0.33	G : 0.33	C : 0.33	
G : 0.33	C : 0.33	A : 0.33	
C : 0.66	G : 0.33	
C : 0.66	G : 0.33	
U : 0.66	A : 0.33	
C : 0.66	G : 0.33	
G : 0.66	U : 0.33	
C : 0.66	G : 0.33	
C : 1.00	
G : 1.00	
G : 0.66	A : 0.33	
G : 0.66	C : 0.33	
A : 0.66	G : 0.33	
G : 0.66	A : 0.33	
G : 1.00	
G : 0.33	C : 0.33	A : 0.33	
C : 0.66	U : 0.33	
G : 0.66	C : 0.33	
A : 0.66	U : 0.33	
G : 0.66	U : 0.33	
C : 0.66	G : 0.33	
U : 0.33	C : 0.33	A : 0.33	
G : 0.33	C : 0.33	A : 0.33	
G : 0.66	U : 0.33	
A : 0.66	G : 0.33	
A : 0.66	G : 0.33	
G : 0.66	U : 0.33	
A : 0.33	G : 0.33	U : 0.33	
U : 0.66	C : 0.33	
G : 0.66	C : 0.33	
G : 0.33	A : 0.33	U : 0.33	
C : 0.66	G : 0.33	
U : 0.66	C : 0.33	
G : 0.66	C : 0.33	
C : 0.33	U : 0.33	G : 0.33	
G : 0.66	c : 0.33	
G : 0.33	c : 0.33	A : 0.33	
A : 0.33	c : 0.33	U : 0.33	
C : 0.33	g : 0.33	G : 0.33	
A : 0.33	g : 0.33	C : 0.33	
G : 0.33	g : 0.33	C : 0.33	
C : 0.66	g : 0.33	
C : 0.33	c : 0.33	A : 0.33	
G : 0.33	c : 0.33	A : 0.33	
C : 0.33	g : 0.33	G : 0.33	
C : 0.33	c : 0.33	U : 0.33	
G : 0.33	g : 0.33	C : 0.33	
C : 0.33	c : 0.33	G : 0.33	
G : 0.66	c : 0.33	
G : 0.33	g : 0.33	A : 0.33	
G : 0.66	c : 0.33	
g : 0.66	G : 0.33	
C : 0.33	u : 0.33	g : 0.33	
c : 0.66	C : 0.33	
G : 0.33	c : 0.33	g : 0.33	
g : 0.66	A : 0.33	
G : 0.33	g : 0.33	c : 0.33	
C : 0.33	c : 0.33	a : 0.33	
g : 0.66	C : 0.33	
C : 0.33	g : 0.33	c : 0.33	
g : 0.66	G : 0.33	
g : 0.66	C : 0.33	
C : 0.33	u : 0.33	c : 0.33	
g : 0.66	G : 0.33	
A : 0.33	a : 0.33	g : 0.33	
G : 0.33	g : 0.33	c : 0.33	
g : 0.66	G : 0.33	
g : 0.66	A : 0.33	
A : 0.33	c : 0.33	a : 0.33	
g : 0.66	A : 0.33	
A : 0.33	g : 0.33	c : 0.33	
g : 0.66	G : 0.33	
g : 0.66	G : 0.33	
c : 0.66	C : 0.33	
g : 0.66	G : 0.33	
g : 0.66	G : 0.33	
g : 0.66	C : 0.33	
C : 0.33	g : 0.33	u : 0.33	
G : 0.33	c : 0.33	g : 0.33	
g : 0.66	U : 0.33	
G : 0.33	g : 0.33	c : 0.33	
A : 0.33	U : 0.33	g : 0.33	
G : 0.33	C : 0.33	g : 0.33	
G : 0.66	g : 0.33	
A : 0.33	C : 0.33	g : 0.33	
G : 0.33	C : 0.33	c : 0.33	
G : 0.33	U : 0.33	u : 0.33	
G : 0.66	g : 0.33	
U : 0.33	C : 0.33	g : 0.33	
G : 0.33	C : 0.33	c : 0.33	
C : 0.33	G : 0.33	g : 0.33	
A : 0.33	G : 0.33	g : 0.33	
A : 0.33	C : 0.33	g : 0.33	
C : 0.33	U : 0.33	g : 0.33	
A : 0.33	G : 0.33	c : 0.33	
U : 0.33	G : 0.33	c : 0.33	
G : 0.66	g : 0.33	
G : 0.66	g : 0.33	
C : 0.66	g : 0.33	
G : 0.33	C : 0.33	g : 0.33	
G : 0.66	c : 0.33	
A : 0.66	c : 0.33	
G : 0.66	g : 0.33	
G : 0.66	g : 0.33	
C : 0.33	G : 0.33	g : 0.33	

#score	1016.6666666666644
#seq	3
#width	360
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_CDS_m3_run1.nuc.txt

#NT
CAACAACCGACUAAUCACCA	chrM:8565-8769(+)$1	204	75	95	33.0208
GCCCACCAUAAUUACCCCCA	chrM:8346-8594(+)$1	248	46	66	22.5000
CGAAACCACACUUAUCCCCA	chrM:10934-11156(+)$1	222	191	211	29.0625
CGAAACCACACUUAUCCCCA	chrM:10993-11219(+)$1	226	132	152	29.0625
CGCCAUCAUCCUAGUCCUCA	chrM:7636-7842(+)$1	206	156	176	29.0625
CCCCACCAUCAUAGCCACCA	chrM:5241-5508(+)$1	267	62	82	23.7500
CAACAACCGACUAAUCACCA	chrM:8559-8761(+)$1	202	81	101	33.0208
CCCCACCCUACUAAACCCCA	chrM:13650-13862(+)$1	212	27	47	35.1041
CGCCAUCAUCCUAGUCCUCA	chrM:7735-7942(+)$1	207	57	77	29.0625
CGCCAUCAUCCUAGUCCUCA	chrM:7680-7895(+)$1	215	112	132	29.0625
CCCCACCCUACUAAACCCCA	chrM:13590-13795(+)$1	205	87	107	35.1041
CCCCACCCUACUAAACCCCA	chrM:13595-13803(+)$1	208	82	102	35.1041
CCCCACCCUACUAAACCCCA	chrM:13576-13779(+)$1	203	101	121	35.1041
CCCCACCCUACUAAACCCCA	chrM:13579-13785(+)$1	206	98	118	35.1041
CAACAACCGACUAAUCACCA	chrM:8596-8798(+)$1	202	44	64	33.0208
CAACAACCGACUAAUCACCA	chrM:8578-8783(+)$1	205	62	82	33.0208
CGCCAUCAUCCUAGUCCUCA	chrM:7576-7832(+)$1	256	216	236	29.0625
CGAAACCACACUUAUCCCCA	chrM:11030-11234(+)$1	204	95	115	29.0625
CGAAACCACACUUAUCCCCA	chrM:11019-11224(+)$1	205	106	126	29.0625
CGCCAUCAUCCUAGUCCUCA	chrM:7632-7836(+)$1	204	160	180	29.0625
CCCCACCCUACUAAACCCCA	chrM:13585-13790(+)$1	205	92	112	35.1041
CAACAACCGACUAAUCACCA	chrM:8561-8765(+)$1	204	79	99	33.0208
CGAAACCACACUUAUCCCCA	chrM:10967-11185(+)$1	218	158	178	29.0625
CAACAACCGACUAAUCACCA	chrM:8556-8759(+)$1	203	84	104	33.0208
CCCCACCAUCAUAGCCACCA	chrM:5211-5441(+)$1	230	92	112	23.7500
CCCCACCCUACUAAACCCCA	chrM:13644-13850(+)$1	206	33	53	35.1041
CCCCACCCUACUAAACCCCA	chrM:13633-13841(+)$1	208	44	64	35.1041
CAACAACCGACUAAUCACCA	chrM:8598-8801(+)$1	203	42	62	33.0208
CAACAACCGACUAAUCACCA	chrM:8569-8774(+)$1	205	71	91	33.0208
CGAAACCACACUUAUCCCCA	chrM:10986-11193(+)$1	207	139	159	29.0625
CCCCACCCUACUAAACCCCA	chrM:13572-13776(+)$1	204	105	125	35.1041
CGCCAUCAUCCUAGUCCUCA	chrM:7712-7935(+)$1	223	80	100	29.0625
CGCCAUCAUCCUAGUCCUCA	chrM:7669-7874(+)$1	205	123	143	29.0625
CGCCAUCAUCCUAGUCCUCA	chrM:7674-7880(+)$1	206	118	138	29.0625
CGCCAUCAUCCUAGUCCUCA	chrM:7642-7848(+)$1	206	150	170	29.0625
CCCCACCCUACUAAACCCCA	chrM:13617-13832(+)$1	215	60	80	35.1041
GCCCACCAUAAUUACCCCCA	chrM:8318-8546(+)$1	228	74	94	22.5000
CGAAACCACACUUAUCCCCA	chrM:11024-11230(+)$1	206	101	121	29.0625
CAACAACCGACUAAUCACCA	chrM:8515-8756(+)$1	241	125	145	33.0208
CAACAACCGACUAAUCACCA	chrM:8576-8778(+)$1	202	64	84	33.0208
CGCCAUCAUCCUAGUCCUCA	chrM:7650-7856(+)$1	206	142	162	29.0625
CAACAACCGACUAAUCACCA	chrM:8587-8796(+)$1	209	53	73	33.0208
CAACAACCGACUAAUCACCA	chrM:8583-8787(+)$1	204	57	77	33.0208
CAACAACCGACUAAUCACCA	chrM:8601-8810(+)$1	209	39	59	33.0208
CAACAACCGACUAAUCACCA	chrM:8574-8776(+)$1	202	66	86	33.0208
CGCCAUCAUCCUAGUCCUCA	chrM:7695-7912(+)$1	217	97	117	29.0625
CCCCACCCUACUAAACCCCA	chrM:13664-13897(+)$1	233	13	33	35.1041

#otherMatches

#Struct PSSM
^^^^^^^^^^^^^^^^^^^^	chrM:11034-11271(+)$1	237	91	111	29.0625
::::::::::::::::::::	chrM:8565-8769(+)$1	204	75	95	33.0208
fyyyyyyyyyyyyyyyyfff	chrM:8346-8594(+)$1	248	46	66	22.5000
^^^^^^^^^^^^^^^^^^^^	chrM:10934-11156(+)$1	222	191	211	29.0625
^^^^^^^^^^^^^^^^^^^^	chrM:10993-11219(+)$1	226	132	152	29.0625
qqqqqqbb333dddd:CCC}	chrM:7636-7842(+)$1	206	156	176	29.0625
:::::::::::DDDD:::::	chrM:5241-5508(+)$1	267	62	82	23.7500
::::::::::::::::::::	chrM:8559-8761(+)$1	202	81	101	33.0208
::::::::::::::::::::	chrM:13650-13862(+)$1	212	27	47	35.1041
EEEE:::ccc"""a[dddd[	chrM:7735-7942(+)$1	207	57	77	29.0625
+bb^^^^^^^^^^^^^^^^^	chrM:7680-7895(+)$1	215	112	132	29.0625
^^^^^^^^^^^^^^^^^^^^	chrM:13590-13795(+)$1	205	87	107	35.1041
^^^^^^^^^^^^^^^^^^^^	chrM:13595-13803(+)$1	208	82	102	35.1041
^^^^^^^^^^^^^^^^^^^^	chrM:13576-13779(+)$1	203	101	121	35.1041
^^^^^^^^^^^^^^^^^^^^	chrM:13579-13785(+)$1	206	98	118	35.1041
::::::dddd++++++++++	chrM:8596-8798(+)$1	202	44	64	33.0208
::::::::::::::::::::	chrM:8578-8783(+)$1	205	62	82	33.0208
:EEEEE::::::::::::::	chrM:7576-7832(+)$1	256	216	236	29.0625
^^^^^^^^^^^^^^^^^^^^	chrM:11030-11234(+)$1	204	95	115	29.0625
^^^^^^^^^^^^^^^^^^^^	chrM:11019-11224(+)$1	205	106	126	29.0625
qqqqqqbb333dddd:::::	chrM:7632-7836(+)$1	204	160	180	29.0625
^^^^^^^^^^^^^^^^^^^^	chrM:13585-13790(+)$1	205	92	112	35.1041
::::::::::::::::::::	chrM:8561-8765(+)$1	204	79	99	33.0208
^^^^^^^^^^^^^^^^^^^^	chrM:10967-11185(+)$1	218	158	178	29.0625
::::::::::::::::::::	chrM:8556-8759(+)$1	203	84	104	33.0208
:::::::::::DDDD\\\\\	chrM:5211-5441(+)$1	230	92	112	23.7500
::::::::::::::::::::	chrM:13644-13850(+)$1	206	33	53	35.1041
cc::::::::::::::::::	chrM:13633-13841(+)$1	208	44	64	35.1041
::::::dddd++++++++++	chrM:8598-8801(+)$1	203	42	62	33.0208
::::::::::::::::::::	chrM:8569-8774(+)$1	205	71	91	33.0208
::::::::::::::::::::	chrM:10986-11193(+)$1	207	139	159	29.0625
^^^^^^^^^^^^^^^^^^^^	chrM:13572-13776(+)$1	204	105	125	35.1041
EEEE:::ccc"""a[dddd[	chrM:7712-7935(+)$1	223	80	100	29.0625
qqqqqqbb333dddd:::::	chrM:7669-7874(+)$1	205	123	143	29.0625
qqqqqqbb333dddd:::::	chrM:7674-7880(+)$1	206	118	138	29.0625
:BB}EEEEEZZZBB::::::	chrM:7642-7848(+)$1	206	150	170	29.0625
^^^^^^^^^^^^^^^^^^^^	chrM:13617-13832(+)$1	215	60	80	35.1041
fyyyyyyyyyyyyyyyyfff	chrM:8318-8546(+)$1	228	74	94	22.5000
^^^^^^^^^^^^^^^^^^^^	chrM:11024-11230(+)$1	206	101	121	29.0625
::::::::::::::::::::	chrM:8515-8756(+)$1	241	125	145	33.0208
::::::::::::::::::::	chrM:8576-8778(+)$1	202	64	84	33.0208
qqqqqqbb333dddd:::::	chrM:7650-7856(+)$1	206	142	162	29.0625
::::::dddd++++++++++	chrM:8587-8796(+)$1	209	53	73	33.0208
::::::dddd++++++++++	chrM:8583-8787(+)$1	204	57	77	33.0208
::::::dddd++++++++++	chrM:8601-8810(+)$1	209	39	59	33.0208
::::::::::::::::::::	chrM:8574-8776(+)$1	202	66	86	33.0208
:::::::ccc"""a[dddd[	chrM:7695-7912(+)$1	217	97	117	29.0625
::::::::::::::::::::	chrM:13664-13897(+)$1	233	13	33	35.1041

#DB
....................	chrM:11034-11271(+)$1	1	91	111	29.0625
....................	chrM:8565-8769(+)$1	1	75	95	33.0208
(................)))	chrM:8346-8594(+)$1	1	46	66	22.5000
....................	chrM:10934-11156(+)$1	1	191	211	29.0625
....................	chrM:10993-11219(+)$1	1	132	152	29.0625
......))...)))).))).	chrM:7636-7842(+)$1	1	156	176	29.0625
...........((((.....	chrM:5241-5508(+)$1	1	62	82	23.7500
....................	chrM:8559-8761(+)$1	1	81	101	33.0208
....................	chrM:13650-13862(+)$1	1	27	47	35.1041
((((...(((...(.((((.	chrM:7735-7942(+)$1	1	57	77	29.0625
.((.................	chrM:7680-7895(+)$1	1	112	132	29.0625
....................	chrM:13590-13795(+)$1	1	87	107	35.1041
....................	chrM:13595-13803(+)$1	1	82	102	35.1041
....................	chrM:13576-13779(+)$1	1	101	121	35.1041
....................	chrM:13579-13785(+)$1	1	98	118	35.1041
......((((..........	chrM:8596-8798(+)$1	1	44	64	33.0208
....................	chrM:8578-8783(+)$1	1	62	82	33.0208
.)))))..............	chrM:7576-7832(+)$1	1	216	236	29.0625
....................	chrM:11030-11234(+)$1	1	95	115	29.0625
....................	chrM:11019-11224(+)$1	1	106	126	29.0625
......))...)))).....	chrM:7632-7836(+)$1	1	160	180	29.0625
....................	chrM:13585-13790(+)$1	1	92	112	35.1041
....................	chrM:8561-8765(+)$1	1	79	99	33.0208
....................	chrM:10967-11185(+)$1	1	158	178	29.0625
....................	chrM:8556-8759(+)$1	1	84	104	33.0208
...........)))).....	chrM:5211-5441(+)$1	1	92	112	23.7500
....................	chrM:13644-13850(+)$1	1	33	53	35.1041
))..................	chrM:13633-13841(+)$1	1	44	64	35.1041
......((((..........	chrM:8598-8801(+)$1	1	42	62	33.0208
....................	chrM:8569-8774(+)$1	1	71	91	33.0208
....................	chrM:10986-11193(+)$1	1	139	159	29.0625
....................	chrM:13572-13776(+)$1	1	105	125	35.1041
((((...(((...(.((((.	chrM:7712-7935(+)$1	1	80	100	29.0625
......))...)))).....	chrM:7669-7874(+)$1	1	123	143	29.0625
......))...)))).....	chrM:7674-7880(+)$1	1	118	138	29.0625
.)).)))))...))......	chrM:7642-7848(+)$1	1	150	170	29.0625
....................	chrM:13617-13832(+)$1	1	60	80	35.1041
(................)))	chrM:8318-8546(+)$1	1	74	94	22.5000
....................	chrM:11024-11230(+)$1	1	101	121	29.0625
....................	chrM:8515-8756(+)$1	1	125	145	33.0208
....................	chrM:8576-8778(+)$1	1	64	84	33.0208
......))...)))).....	chrM:7650-7856(+)$1	1	142	162	29.0625
......((((..........	chrM:8587-8796(+)$1	1	53	73	33.0208
......((((..........	chrM:8583-8787(+)$1	1	57	77	33.0208
......((((..........	chrM:8601-8810(+)$1	1	39	59	33.0208
....................	chrM:8574-8776(+)$1	1	66	86	33.0208
.......(((...(.((((.	chrM:7695-7912(+)$1	1	97	117	29.0625
....................	chrM:13664-13897(+)$1	1	13	33	35.1041

#PSSM
C : 0.95	G : 0.04	
G : 0.39	C : 0.31	A : 0.29	
C : 0.54	A : 0.45	
C : 0.83	A : 0.16	
A : 1.00	
C : 0.47	A : 0.29	U : 0.22	
C : 1.00	
C : 0.52	A : 0.47	
U : 0.54	G : 0.29	C : 0.16	
A : 0.72	C : 0.27	
C : 0.91	A : 0.08	
U : 1.00	
A : 0.79	U : 0.20	
A : 0.72	G : 0.27	
U : 0.68	A : 0.22	C : 0.08	
C : 1.00	
C : 0.66	A : 0.33	
C : 0.77	U : 0.22	
C : 1.00	
A : 1.00	

#score	1493.125
#seq	48
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_transcript_m3_run1.nuc.txt

#NT
UCUU	chr17:34173978-34174199(+)$1	221	53	57	12.0000
UCUU	chr19:54704682-54704932(+)$1	250	44	48	12.0000
UCUU	chr18:3255958-3256196(+)$1	238	18	22	12.0000
UCUU	chr11:93467586-93467869(-)$1	283	50	54	12.0000
UCUU	chr17:73164148-73164403(-)$1	255	4	8	12.0000
UCUU	chr6:30692325-30692559(+)$1	234	41	45	12.0000
UCUU	chr6:163994235-163994445(+)$1	210	42	46	12.0000
UCUU	chr7:6502452-6502669(-)$1	217	1	5	12.0000
UCUU	chr11:47753441-47753686(-)$1	245	34	38	12.0000
UCUU	chr11:65268257-65268462(+)$1	205	130	134	12.0000
UCUU	chr16:89437451-89437693(-)$1	242	44	48	12.0000
UCUU	chr9:96441362-96441632(+)$1	270	71	75	12.0000
ucuu	chr4:68661505-68661764(+)$1	259	3	7	12.0000
UCUU	chr15:91524808-91525054(-)$1	246	96	100	12.0000
UCUU	chr6:31507936-31508185(-)$1	249	97	101	12.0000
UCUU	chr17:60142107-60142379(-)$1	272	97	101	12.0000
UCUU	chr16:67595752-67596001(-)$1	249	59	63	12.0000
UCUU	chr12:53565461-53565725(-)$1	264	48	52	12.0000
UCUU	chrX:73047374-73047641(-)$1	267	15	19	12.0000
UCUU	chrX:70761092-70761333(+)$1	241	34	38	12.0000
UCUU	chr18:192841-193097(+)$1	256	141	145	12.0000
UCUU	chr17:66527081-66527332(+)$1	251	141	145	12.0000
UCUU	chr1:202102493-202102736(-)$1	243	21	25	12.0000
UCUU	chr6:33269225-33269449(-)$1	224	54	58	12.0000
ucuu	chr11:65199499-65199712(+)$1	213	3	7	12.0000
UCUU	chr17:56082452-56082675(-)$1	223	31	35	12.0000
UCUU	chr3:47629202-47629464(-)$1	262	85	89	12.0000
UCUU	chr22:20890720-20890973(+)$1	253	24	28	12.0000
UCUU	chr17:76220517-76220728(+)$1	211	95	99	12.0000
UCUU	chr1:32799080-32799318(+)$1	238	43	47	12.0000
UCUU	chr1:71529306-71529540(-)$1	234	111	115	12.0000
UCUU	chr11:66393689-66393898(+)$1	209	127	131	12.0000
UCUU	chr2:20232460-20232753(-)$1	293	105	109	12.0000
UCUU	chr7:5460994-5461248(-)$1	254	80	84	12.0000
UCUU	chr3:12647348-12647641(-)$1	293	24	28	12.0000
UCUU	chr3:43739681-43739934(+)$1	253	27	31	12.0000
UCUU	chr20:43536265-43536519(+)$1	254	43	47	12.0000
UCUU	chr12:112666254-112666534(-)$1	280	185	189	12.0000
UCUU	chr2:178086673-178086905(+)$1	232	98	102	12.0000
UCUU	chr1:145498892-145499162(+)$1	270	50	54	12.0000
UCUU	chr12:124007809-124008089(-)$1	280	93	97	12.0000
UCUU	chr10:104118456-104118727(+)$1	271	55	59	12.0000
UCUU	chr13:20302302-20302547(-)$1	245	3	7	12.0000
UCUU	chr14:69254777-69255021(-)$1	244	26	30	12.0000
UCUU	chr11:12886369-12886615(+)$1	246	35	39	12.0000
UCUU	chr2:61413181-61413456(+)$1	275	75	79	12.0000
UCUU	chr2:70165486-70165762(+)$1	276	117	121	12.0000
UCUU	chr6:86352157-86352403(-)$1	246	218	222	12.0000
UCUU	chr12:110720528-110720783(+)$1	255	66	70	12.0000
UCUU	chr8:74463815-74464084(-)$1	269	15	19	12.0000
UCUU	chr3:184019361-184019612(+)$1	251	91	95	12.0000
UCUU	chr3:49361947-49362218(-)$1	271	136	140	12.0000
UCUU	chr1:153611015-153611273(+)$1	258	94	98	12.0000
UCUU	chr6:158327166-158327419(+)$1	253	104	108	12.0000
UCUU	chr10:126086531-126086768(-)$1	237	62	66	12.0000
UCuu	chr18:5238980-5239241(+)$1	261	96	100	12.0000
UCUU	chr3:187462632-187462856(-)$1	224	161	165	12.0000
UCUU	chr4:109588696-109588951(+)$1	255	53	57	12.0000
UCUU	chr9:123942391-123942652(-)$1	261	22	26	12.0000
UCUU	chr3:195791023-195791246(-)$1	223	58	62	12.0000
UCUU	chr10:70744074-70744313(+)$1	239	50	54	12.0000
UCUU	chr15:66180270-66180508(+)$1	238	39	43	12.0000
UCUU	chr8:26268740-26268948(+)$1	208	49	53	12.0000
UCUU	chr17:62498610-62498834(-)$1	224	53	57	12.0000
UCUU	chr11:65193464-65193690(+)$1	226	164	168	12.0000
UCUU	chr17:4174721-4174993(-)$1	272	138	142	12.0000
UCUU	chr6:99858468-99858690(-)$1	222	123	127	12.0000
UCUU	chr7:150028534-150028784(+)$1	250	124	128	12.0000
ucuu	chr19:37503582-37503806(+)$1	224	10	14	12.0000
UCUU	chr9:33917399-33917654(+)$1	255	48	52	12.0000
UCUU	chrX:39949978-39950227(-)$1	249	23	27	12.0000
UCUU	chr17:27590697-27590999(-)$1	302	35	39	12.0000
UCUU	chr11:18501772-18502045(-)$1	273	0	4	12.0000
UCUU	chr11:9302752-9302996(-)$1	244	62	66	12.0000
UCUU	chr12:4414091-4414353(+)$1	262	40	44	12.0000

#otherMatches

#Struct PSSM
ffff	chr5:162918227-162918531(+)$1	304	93	97	12.0000
33cc	chr17:34173978-34174199(+)$1	221	53	57	12.0000
gg!!	chr19:54704682-54704932(+)$1	250	44	48	12.0000
dd22	chr18:3255958-3256196(+)$1	238	18	22	12.0000
[ccc	chr11:93467586-93467869(-)$1	283	50	54	12.0000
cccm	chr17:73164148-73164403(-)$1	255	4	8	12.0000
::::	chr6:30692325-30692559(+)$1	234	41	45	12.0000
tttt	chr6:163994235-163994445(+)$1	210	42	46	12.0000
hhhh	chr7:6502452-6502669(-)$1	217	1	5	12.0000
oocc	chr11:47753441-47753686(-)$1	245	34	38	12.0000
eeee	chr11:65268257-65268462(+)$1	205	130	134	12.0000
gg!!	chr16:89437451-89437693(-)$1	242	44	48	12.0000
gg::	chr9:96441362-96441632(+)$1	270	71	75	12.0000
ffff	chr4:68661505-68661764(+)$1	259	3	7	12.0000
e]ee	chr15:91524808-91525054(-)$1	246	96	100	12.0000
b!!g	chr6:31507936-31508185(-)$1	249	97	101	12.0000
::::	chr17:60142107-60142379(-)$1	272	97	101	12.0000
DDDD	chr16:67595752-67596001(-)$1	249	59	63	12.0000
mmmc	chr12:53565461-53565725(-)$1	264	48	52	12.0000
cuuu	chrX:73047374-73047641(-)$1	267	15	19	12.0000
:::h	chrX:70761092-70761333(+)$1	241	34	38	12.0000
iii:	chr18:192841-193097(+)$1	256	141	145	12.0000
oooo	chr17:66527081-66527332(+)$1	251	141	145	12.0000
$$$$	chr1:202102493-202102736(-)$1	243	21	25	12.0000
::::	chr6:33269225-33269449(-)$1	224	54	58	12.0000
::::	chr11:65199499-65199712(+)$1	213	3	7	12.0000
mmmf	chr17:56082452-56082675(-)$1	223	31	35	12.0000
pppp	chr3:47629202-47629464(-)$1	262	85	89	12.0000
bb]e	chr22:20890720-20890973(+)$1	253	24	28	12.0000
ffll	chr17:76220517-76220728(+)$1	211	95	99	12.0000
^^^^	chr1:32799080-32799318(+)$1	238	43	47	12.0000
]ccc	chr1:71529306-71529540(-)$1	234	111	115	12.0000
mmdd	chr11:66393689-66393898(+)$1	209	127	131	12.0000
hhhc	chr2:20232460-20232753(-)$1	293	105	109	12.0000
::::	chr7:5460994-5461248(-)$1	254	80	84	12.0000
eeee	chr3:12647348-12647641(-)$1	293	24	28	12.0000
xxxx	chr3:43739681-43739934(+)$1	253	27	31	12.0000
GGGG	chr20:43536265-43536519(+)$1	254	43	47	12.0000
::::	chr12:112666254-112666534(-)$1	280	185	189	12.0000
dddd	chr2:178086673-178086905(+)$1	232	98	102	12.0000
gggg	chr1:145498892-145499162(+)$1	270	50	54	12.0000
::::	chr12:124007809-124008089(-)$1	280	93	97	12.0000
####	chr10:104118456-104118727(+)$1	271	55	59	12.0000
::::	chr13:20302302-20302547(-)$1	245	3	7	12.0000
&&&d	chr14:69254777-69255021(-)$1	244	26	30	12.0000
KKEE	chr11:12886369-12886615(+)$1	246	35	39	12.0000
NNNE	chr2:61413181-61413456(+)$1	275	75	79	12.0000
ee^^	chr2:70165486-70165762(+)$1	276	117	121	12.0000
EEEY	chr6:86352157-86352403(-)$1	246	218	222	12.0000
NNHH	chr12:110720528-110720783(+)$1	255	66	70	12.0000
::::	chr8:74463815-74464084(-)$1	269	15	19	12.0000
999=	chr3:184019361-184019612(+)$1	251	91	95	12.0000
eeee	chr3:49361947-49362218(-)$1	271	136	140	12.0000
eeee	chr1:153611015-153611273(+)$1	258	94	98	12.0000
hhh#	chr6:158327166-158327419(+)$1	253	104	108	12.0000
qqii	chr10:126086531-126086768(-)$1	237	62	66	12.0000
GGGG	chr18:5238980-5239241(+)$1	261	96	100	12.0000
====	chr3:187462632-187462856(-)$1	224	161	165	12.0000
DDD:	chr4:109588696-109588951(+)$1	255	53	57	12.0000
rrrr	chr9:123942391-123942652(-)$1	261	22	26	12.0000
c]dd	chr3:195791023-195791246(-)$1	223	58	62	12.0000
c###	chr10:70744074-70744313(+)$1	239	50	54	12.0000
e###	chr15:66180270-66180508(+)$1	238	39	43	12.0000
gggg	chr8:26268740-26268948(+)$1	208	49	53	12.0000
^^^^	chr17:62498610-62498834(-)$1	224	53	57	12.0000
JJJJ	chr11:65193464-65193690(+)$1	226	164	168	12.0000
oooo	chr17:4174721-4174993(-)$1	272	138	142	12.0000
nnnn	chr6:99858468-99858690(-)$1	222	123	127	12.0000
dddd	chr7:150028534-150028784(+)$1	250	124	128	12.0000
PPPP	chr19:37503582-37503806(+)$1	224	10	14	12.0000
ma22	chr9:33917399-33917654(+)$1	255	48	52	12.0000
c22h	chrX:39949978-39950227(-)$1	249	23	27	12.0000
FFF{	chr17:27590697-27590999(-)$1	302	35	39	12.0000
::::	chr11:18501772-18502045(-)$1	273	0	4	12.0000
bb]e	chr11:9302752-9302996(-)$1	244	62	66	12.0000
QQQQ	chr12:4414091-4414353(+)$1	262	40	44	12.0000

#DB
))))	chr5:162918227-162918531(+)$1	1	93	97	12.0000
..))	chr17:34173978-34174199(+)$1	1	53	57	12.0000
((..	chr19:54704682-54704932(+)$1	1	44	48	12.0000
))..	chr18:3255958-3256196(+)$1	1	18	22	12.0000
.(((	chr11:93467586-93467869(-)$1	1	50	54	12.0000
(((.	chr17:73164148-73164403(-)$1	1	4	8	12.0000
....	chr6:30692325-30692559(+)$1	1	41	45	12.0000
....	chr6:163994235-163994445(+)$1	1	42	46	12.0000
((((	chr7:6502452-6502669(-)$1	1	1	5	12.0000
..))	chr11:47753441-47753686(-)$1	1	34	38	12.0000
((((	chr11:65268257-65268462(+)$1	1	130	134	12.0000
((..	chr16:89437451-89437693(-)$1	1	44	48	12.0000
))..	chr9:96441362-96441632(+)$1	1	71	75	12.0000
((((	chr4:68661505-68661764(+)$1	1	3	7	12.0000
).))	chr15:91524808-91525054(-)$1	1	96	100	12.0000
(..(	chr6:31507936-31508185(-)$1	1	97	101	12.0000
....	chr17:60142107-60142379(-)$1	1	97	101	12.0000
((((	chr16:67595752-67596001(-)$1	1	59	63	12.0000
...)	chr12:53565461-53565725(-)$1	1	48	52	12.0000
(...	chrX:73047374-73047641(-)$1	1	15	19	12.0000
...(	chrX:70761092-70761333(+)$1	1	34	38	12.0000
))).	chr18:192841-193097(+)$1	1	141	145	12.0000
....	chr17:66527081-66527332(+)$1	1	141	145	12.0000
....	chr1:202102493-202102736(-)$1	1	21	25	12.0000
....	chr6:33269225-33269449(-)$1	1	54	58	12.0000
....	chr11:65199499-65199712(+)$1	1	3	7	12.0000
...)	chr17:56082452-56082675(-)$1	1	31	35	12.0000
....	chr3:47629202-47629464(-)$1	1	85	89	12.0000
)).)	chr22:20890720-20890973(+)$1	1	24	28	12.0000
((..	chr17:76220517-76220728(+)$1	1	95	99	12.0000
....	chr1:32799080-32799318(+)$1	1	43	47	12.0000
.)))	chr1:71529306-71529540(-)$1	1	111	115	12.0000
..))	chr11:66393689-66393898(+)$1	1	127	131	12.0000
))))	chr2:20232460-20232753(-)$1	1	105	109	12.0000
....	chr7:5460994-5461248(-)$1	1	80	84	12.0000
))))	chr3:12647348-12647641(-)$1	1	24	28	12.0000
....	chr3:43739681-43739934(+)$1	1	27	31	12.0000
((((	chr20:43536265-43536519(+)$1	1	43	47	12.0000
....	chr12:112666254-112666534(-)$1	1	185	189	12.0000
))))	chr2:178086673-178086905(+)$1	1	98	102	12.0000
))))	chr1:145498892-145499162(+)$1	1	50	54	12.0000
....	chr12:124007809-124008089(-)$1	1	93	97	12.0000
....	chr10:104118456-104118727(+)$1	1	55	59	12.0000
....	chr13:20302302-20302547(-)$1	1	3	7	12.0000
...(	chr14:69254777-69255021(-)$1	1	26	30	12.0000
..((	chr11:12886369-12886615(+)$1	1	35	39	12.0000
...(	chr2:61413181-61413456(+)$1	1	75	79	12.0000
((..	chr2:70165486-70165762(+)$1	1	117	121	12.0000
))).	chr6:86352157-86352403(-)$1	1	218	222	12.0000
..((	chr12:110720528-110720783(+)$1	1	66	70	12.0000
....	chr8:74463815-74464084(-)$1	1	15	19	12.0000
...)	chr3:184019361-184019612(+)$1	1	91	95	12.0000
((((	chr3:49361947-49362218(-)$1	1	136	140	12.0000
))))	chr1:153611015-153611273(+)$1	1	94	98	12.0000
(((.	chr6:158327166-158327419(+)$1	1	104	108	12.0000
..))	chr10:126086531-126086768(-)$1	1	62	66	12.0000
((((	chr18:5238980-5239241(+)$1	1	96	100	12.0000
))))	chr3:187462632-187462856(-)$1	1	161	165	12.0000
(((.	chr4:109588696-109588951(+)$1	1	53	57	12.0000
....	chr9:123942391-123942652(-)$1	1	22	26	12.0000
).))	chr3:195791023-195791246(-)$1	1	58	62	12.0000
(...	chr10:70744074-70744313(+)$1	1	50	54	12.0000
(...	chr15:66180270-66180508(+)$1	1	39	43	12.0000
((((	chr8:26268740-26268948(+)$1	1	49	53	12.0000
....	chr17:62498610-62498834(-)$1	1	53	57	12.0000
))))	chr11:65193464-65193690(+)$1	1	164	168	12.0000
....	chr17:4174721-4174993(-)$1	1	138	142	12.0000
....	chr6:99858468-99858690(-)$1	1	123	127	12.0000
))))	chr7:150028534-150028784(+)$1	1	124	128	12.0000
....	chr19:37503582-37503806(+)$1	1	10	14	12.0000
.)..	chr9:33917399-33917654(+)$1	1	48	52	12.0000
)..)	chrX:39949978-39950227(-)$1	1	23	27	12.0000
(((.	chr17:27590697-27590999(-)$1	1	35	39	12.0000
....	chr11:18501772-18502045(-)$1	1	0	4	12.0000
)).)	chr11:9302752-9302996(-)$1	1	62	66	12.0000
....	chr12:4414091-4414353(+)$1	1	40	44	12.0000

#PSSM
U : 0.96	u : 0.03	
C : 0.96	c : 0.03	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	

#score	912.0000000000001
#seq	76
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_UTR_m1_run1.nuc.txt

#NT
CCCCA	chr11:2150537-2150741(-)$1	204	56	61	14.9999
CCCCA	chr12:120637039-120637312(-)$1	273	230	235	14.9999
CCCCA	chr11:2152534-2152736(-)$1	202	85	90	14.9999
CCCCA	chr11:2152297-2152506(-)$1	209	167	172	14.9999
CCCCA	chr11:2153441-2153644(-)$1	203	11	16	14.9999
CCCCA	chr11:2153925-2154127(-)$1	202	168	173	14.9999
CCCCA	chr11:2159434-2159636(-)$1	202	14	19	14.9999
CCCCA	chr3:58139064-58139293(+)$1	229	13	18	14.9999
CCCCA	chr11:2153547-2153752(-)$1	205	31	36	14.9999
CCCCA	chr12:6645595-6645801(+)$1	206	183	188	14.9999
CCCCA	chrX:153063732-153064010(+)$1	278	164	169	14.9999
CCCCA	chr11:2154105-2154310(-)$1	205	65	70	14.9999
CCCCA	chr11:2154348-2154553(-)$1	205	108	113	14.9999
CCCCA	chr11:2154102-2154305(-)$1	203	60	65	14.9999
CCCCA	chr11:2150590-2150796(-)$1	206	5	10	14.9999
CCCCA	chr11:2153483-2153686(-)$1	203	53	58	14.9999
CCCCA	chr11:2150898-2151100(-)$1	202	54	59	14.9999
CCCCA	chr11:2153209-2153417(-)$1	208	18	23	14.9999
CCCCA	chr11:2152331-2152533(-)$1	202	194	199	14.9999
CCCCA	chr11:2150393-2150595(-)$1	202	15	20	14.9999
CCCCA	chr12:6645820-6646028(+)$1	208	23	28	14.9999
CCCCA	chr19:812021-812268(+)$1	247	125	130	14.9999
CCCCA	chr11:2150429-2150632(-)$1	203	52	57	14.9999
CCCCA	chr12:123997754-123998010(-)$1	256	86	91	14.9999
CCCCA	chr11:2152576-2152778(-)$1	202	127	132	14.9999
CCCCA	chr12:1897311-1897608(+)$1	297	16	21	14.9999
CCCCA	chr11:2152036-2152240(-)$1	204	43	48	14.9999
CCCCA	chr11:2153608-2153820(-)$1	212	99	104	14.9999
CCCCA	chr11:2160082-2160286(-)$1	204	183	188	14.9999
CCCCA	chr12:120634625-120634837(-)$1	212	188	193	14.9999
CCCCA	chr11:2160234-2160449(-)$1	215	74	79	14.9999
CCCCA	chr11:2160249-2160451(-)$1	202	76	81	14.9999
CCCCA	chr11:2159483-2159688(-)$1	205	10	15	14.9999
CCCCA	chr11:2159576-2159779(-)$1	203	101	106	14.9999
CCCCA	chr11:2156566-2156768(-)$1	202	3	8	14.9999
CCCCA	chr11:2159507-2159721(-)$1	214	43	48	14.9999
CCCCA	chr11:2152025-2152231(-)$1	206	34	39	14.9999
CCCCA	chr12:56538072-56538334(+)$1	262	63	68	14.9999
CCCCA	chr11:2152543-2152746(-)$1	203	95	100	14.9999
CCCCA	chr11:2159471-2159674(-)$1	203	52	57	14.9999
CCCCA	chr11:2153603-2153808(-)$1	205	87	92	14.9999
CCCCA	chr11:2160089-2160293(-)$1	204	190	195	14.9999
CCCCA	chr12:123997810-123998098(-)$1	288	174	179	14.9999
CCCCA	chr3:53262964-53263190(-)$1	226	24	29	14.9999
CCCCA	chr8:27529384-27529644(+)$1	260	154	159	14.9999
CCCCA	chr11:2153491-2153694(-)$1	203	61	66	14.9999
CCCCA	chr8:143817702-143817975(+)$1	273	9	14	14.9999
CCCCA	chr11:2152570-2152772(-)$1	202	121	126	14.9999
CCCCA	chr11:2153238-2153441(-)$1	203	42	47	14.9999
CCCCA	chr11:2152065-2152276(-)$1	211	79	84	14.9999
CCCCA	chr11:2160087-2160288(-)$1	201	185	190	14.9999
CCCCA	chr11:2156641-2156847(-)$1	206	82	87	14.9999
CCCCA	chr11:2150379-2150581(-)$1	202	1	6	14.9999
CCCCA	chr11:2153936-2154149(-)$1	213	190	195	14.9999
CCCCA	chr11:2152235-2152442(-)$1	207	103	108	14.9999
CCCCA	chr11:2150607-2150826(-)$1	219	35	40	14.9999
CCCCA	chr5:149823804-149824012(-)$1	208	88	93	14.9999
CCCCA	chr11:2153596-2153803(-)$1	207	82	87	14.9999
CCCCA	chr11:2152076-2152280(-)$1	204	83	88	14.9999
CCCCA	chr2:220414916-220415175(+)$1	259	16	21	14.9999
CCCCA	chr11:2154188-2154400(-)$1	212	155	160	14.9999
CCCCA	chr12:120635050-120635254(-)$1	204	49	54	14.9999
CCCCA	chr11:2156542-2156745(-)$1	203	72	77	14.9999
CCCCA	chr11:2154141-2154344(-)$1	203	99	104	14.9999
CCCCA	chr11:76508395-76508706(+)$1	311	5	10	14.9999
CCCCA	chr11:2159458-2159667(-)$1	209	45	50	14.9999
CCCCA	chr11:2150596-2150807(-)$1	211	16	21	14.9999
CCCCA	chr11:2154136-2154338(-)$1	202	93	98	14.9999

#otherMatches

#Struct PSSM
bbhhh	chr9:95887082-95887376(-)$1	294	175	180	14.9999
c:::e	chr11:2150537-2150741(-)$1	204	56	61	14.9999
ff:gg	chr12:120637039-120637312(-)$1	273	230	235	14.9999
::ccc	chr11:2152534-2152736(-)$1	202	85	90	14.9999
C}ACC	chr11:2152297-2152506(-)$1	209	167	172	14.9999
cdddd	chr11:2153441-2153644(-)$1	203	11	16	14.9999
:::::	chr11:2153925-2154127(-)$1	202	168	173	14.9999
:CCC:	chr11:2159434-2159636(-)$1	202	14	19	14.9999
:::::	chr3:58139064-58139293(+)$1	229	13	18	14.9999
NNNND	chr11:2153547-2153752(-)$1	205	31	36	14.9999
DDDYY	chr12:6645595-6645801(+)$1	206	183	188	14.9999
fffff	chrX:153063732-153064010(+)$1	278	164	169	14.9999
ttttt	chr11:2154105-2154310(-)$1	205	65	70	14.9999
[dddd	chr11:2154348-2154553(-)$1	205	108	113	14.9999
MBB{F	chr11:2154102-2154305(-)$1	203	60	65	14.9999
F::::	chr11:2150590-2150796(-)$1	206	5	10	14.9999
DDDKK	chr11:2153483-2153686(-)$1	203	53	58	14.9999
^^^^^	chr11:2150898-2151100(-)$1	202	54	59	14.9999
:::::	chr11:2153209-2153417(-)$1	208	18	23	14.9999
e5555	chr11:2152331-2152533(-)$1	202	194	199	14.9999
&&&&&	chr11:2150393-2150595(-)$1	202	15	20	14.9999
D::ff	chr12:6645820-6646028(+)$1	208	23	28	14.9999
::bb[	chr19:812021-812268(+)$1	247	125	130	14.9999
:::::	chr11:2150429-2150632(-)$1	203	52	57	14.9999
bmmmm	chr12:123997754-123998010(-)$1	256	86	91	14.9999
::ccc	chr11:2152576-2152778(-)$1	202	127	132	14.9999
fff[d	chr12:1897311-1897608(+)$1	297	16	21	14.9999
:FFFF	chr11:2152036-2152240(-)$1	204	43	48	14.9999
ooccc	chr11:2153608-2153820(-)$1	212	99	104	14.9999
affff	chr11:2160082-2160286(-)$1	204	183	188	14.9999
e22ee	chr12:120634625-120634837(-)$1	212	188	193	14.9999
^^^^^	chr11:2160234-2160449(-)$1	215	74	79	14.9999
^^^^^	chr11:2160249-2160451(-)$1	202	76	81	14.9999
BBLLL	chr11:2159483-2159688(-)$1	205	10	15	14.9999
qqqqq	chr11:2159576-2159779(-)$1	203	101	106	14.9999
DDDEE	chr11:2156566-2156768(-)$1	202	3	8	14.9999
BBLLL	chr11:2159507-2159721(-)$1	214	43	48	14.9999
NFFFF	chr11:2152025-2152231(-)$1	206	34	39	14.9999
:CCC{	chr12:56538072-56538334(+)$1	262	63	68	14.9999
::ccc	chr11:2152543-2152746(-)$1	203	95	100	14.9999
+++++	chr11:2159471-2159674(-)$1	203	52	57	14.9999
KFFFF	chr11:2153603-2153808(-)$1	205	87	92	14.9999
e7777	chr11:2160089-2160293(-)$1	204	190	195	14.9999
dddd:	chr12:123997810-123998098(-)$1	288	174	179	14.9999
gggrr	chr3:53262964-53263190(-)$1	226	24	29	14.9999
ggggg	chr8:27529384-27529644(+)$1	260	154	159	14.9999
KKDDD	chr11:2153491-2153694(-)$1	203	61	66	14.9999
odddd	chr8:143817702-143817975(+)$1	273	9	14	14.9999
:::::	chr11:2152570-2152772(-)$1	202	121	126	14.9999
wwddd	chr11:2153238-2153441(-)$1	203	42	47	14.9999
d]a22	chr11:2152065-2152276(-)$1	211	79	84	14.9999
affff	chr11:2160087-2160288(-)$1	201	185	190	14.9999
cdddd	chr11:2156641-2156847(-)$1	206	82	87	14.9999
:::::	chr11:2150379-2150581(-)$1	202	1	6	14.9999
:::::	chr11:2153936-2154149(-)$1	213	190	195	14.9999
bb]cc	chr11:2152235-2152442(-)$1	207	103	108	14.9999
F::::	chr11:2150607-2150826(-)$1	219	35	40	14.9999
:::ff	chr5:149823804-149824012(-)$1	208	88	93	14.9999
KFFFF	chr11:2153596-2153803(-)$1	207	82	87	14.9999
]a555	chr11:2152076-2152280(-)$1	204	83	88	14.9999
JJJJJ	chr2:220414916-220415175(+)$1	259	16	21	14.9999
____B	chr11:2154188-2154400(-)$1	212	155	160	14.9999
fffxx	chr12:120635050-120635254(-)$1	204	49	54	14.9999
eeacc	chr11:2156542-2156745(-)$1	203	72	77	14.9999
ttttt	chr11:2154141-2154344(-)$1	203	99	104	14.9999
FFFFF	chr11:76508395-76508706(+)$1	311	5	10	14.9999
:::::	chr11:2159458-2159667(-)$1	209	45	50	14.9999
E::::	chr11:2150596-2150807(-)$1	211	16	21	14.9999
A////	chr11:2154136-2154338(-)$1	202	93	98	14.9999

#DB
(((((	chr9:95887082-95887376(-)$1	1	175	180	14.9999
)...(	chr11:2150537-2150741(-)$1	1	56	61	14.9999
)).((	chr12:120637039-120637312(-)$1	1	230	235	14.9999
..(((	chr11:2152534-2152736(-)$1	1	85	90	14.9999
).)))	chr11:2152297-2152506(-)$1	1	167	172	14.9999
(((((	chr11:2153441-2153644(-)$1	1	11	16	14.9999
.....	chr11:2153925-2154127(-)$1	1	168	173	14.9999
.(((.	chr11:2159434-2159636(-)$1	1	14	19	14.9999
.....	chr3:58139064-58139293(+)$1	1	13	18	14.9999
....(	chr11:2153547-2153752(-)$1	1	31	36	14.9999
)))..	chr12:6645595-6645801(+)$1	1	183	188	14.9999
(((((	chrX:153063732-153064010(+)$1	1	164	169	14.9999
.....	chr11:2154105-2154310(-)$1	1	65	70	14.9999
.((((	chr11:2154348-2154553(-)$1	1	108	113	14.9999
.((.(	chr11:2154102-2154305(-)$1	1	60	65	14.9999
(....	chr11:2150590-2150796(-)$1	1	5	10	14.9999
(((..	chr11:2153483-2153686(-)$1	1	53	58	14.9999
.....	chr11:2150898-2151100(-)$1	1	54	59	14.9999
.....	chr11:2153209-2153417(-)$1	1	18	23	14.9999
)....	chr11:2152331-2152533(-)$1	1	194	199	14.9999
.....	chr11:2150393-2150595(-)$1	1	15	20	14.9999
(..((	chr12:6645820-6646028(+)$1	1	23	28	14.9999
..((.	chr19:812021-812268(+)$1	1	125	130	14.9999
.....	chr11:2150429-2150632(-)$1	1	52	57	14.9999
(....	chr12:123997754-123998010(-)$1	1	86	91	14.9999
..(((	chr11:2152576-2152778(-)$1	1	127	132	14.9999
(((.(	chr12:1897311-1897608(+)$1	1	16	21	14.9999
.((((	chr11:2152036-2152240(-)$1	1	43	48	14.9999
..)))	chr11:2153608-2153820(-)$1	1	99	104	14.9999
)))))	chr11:2160082-2160286(-)$1	1	183	188	14.9999
)..))	chr12:120634625-120634837(-)$1	1	188	193	14.9999
.....	chr11:2160234-2160449(-)$1	1	74	79	14.9999
.....	chr11:2160249-2160451(-)$1	1	76	81	14.9999
((...	chr11:2159483-2159688(-)$1	1	10	15	14.9999
.....	chr11:2159576-2159779(-)$1	1	101	106	14.9999
(((((	chr11:2156566-2156768(-)$1	1	3	8	14.9999
((...	chr11:2159507-2159721(-)$1	1	43	48	14.9999
.((((	chr11:2152025-2152231(-)$1	1	34	39	14.9999
.(((.	chr12:56538072-56538334(+)$1	1	63	68	14.9999
..(((	chr11:2152543-2152746(-)$1	1	95	100	14.9999
.....	chr11:2159471-2159674(-)$1	1	52	57	14.9999
.((((	chr11:2153603-2153808(-)$1	1	87	92	14.9999
)....	chr11:2160089-2160293(-)$1	1	190	195	14.9999
)))).	chr12:123997810-123998098(-)$1	1	174	179	14.9999
(((..	chr3:53262964-53263190(-)$1	1	24	29	14.9999
)))))	chr8:27529384-27529644(+)$1	1	154	159	14.9999
..(((	chr11:2153491-2153694(-)$1	1	61	66	14.9999
.))))	chr8:143817702-143817975(+)$1	1	9	14	14.9999
.....	chr11:2152570-2152772(-)$1	1	121	126	14.9999
..)))	chr11:2153238-2153441(-)$1	1	42	47	14.9999
).)..	chr11:2152065-2152276(-)$1	1	79	84	14.9999
)))))	chr11:2160087-2160288(-)$1	1	185	190	14.9999
)((((	chr11:2156641-2156847(-)$1	1	82	87	14.9999
.....	chr11:2150379-2150581(-)$1	1	1	6	14.9999
.....	chr11:2153936-2154149(-)$1	1	190	195	14.9999
)).))	chr11:2152235-2152442(-)$1	1	103	108	14.9999
(....	chr11:2150607-2150826(-)$1	1	35	40	14.9999
...((	chr5:149823804-149824012(-)$1	1	88	93	14.9999
.((((	chr11:2153596-2153803(-)$1	1	82	87	14.9999
.)...	chr11:2152076-2152280(-)$1	1	83	88	14.9999
(((((	chr2:220414916-220415175(+)$1	1	16	21	14.9999
....)	chr11:2154188-2154400(-)$1	1	155	160	14.9999
(((..	chr12:120635050-120635254(-)$1	1	49	54	14.9999
(((((	chr11:2156542-2156745(-)$1	1	72	77	14.9999
.....	chr11:2154141-2154344(-)$1	1	99	104	14.9999
(((((	chr11:76508395-76508706(+)$1	1	5	10	14.9999
.....	chr11:2159458-2159667(-)$1	1	45	50	14.9999
(....	chr11:2150596-2150807(-)$1	1	16	21	14.9999
)....	chr11:2154136-2154338(-)$1	1	93	98	14.9999

#PSSM
C : 0.99	
C : 0.99	
C : 0.99	
C : 0.99	
A : 0.99	

#score	1034.9999999999995
#seq	69
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_transcript_m3_run2.nuc.txt

#NT
AUUUUGUGUUUAU	chr8:64101182-64101435(+)$1	253	31	44	20.2727
uuucuuuuuuuug	chr17:27607857-27608107(-)$1	250	92	105	19.9090
AUUUUUUAUUUUU	chr2:61150208-61150459(+)$1	251	92	105	25.1818
uuuuuuuuuuuug	chr17:60120407-60120623(-)$1	216	94	107	24.4545
UUUUUGUUAUUUA	chr18:3006889-3007103(-)$1	214	58	71	19.9090
Auuuucuuuuuuu	chr19:2119811-2120066(-)$1	255	93	106	25.4545
ccuuuguuuuuuu	chr1:2196161-2196432(+)$1	271	94	107	20.8181
UUUUAGUUUUUUC	chr9:21815513-21815771(+)$1	258	33	46	19.7272
ACUUUUUUUUUUC	chr16:14641423-14641676(-)$1	253	41	54	19.3636
auuuuuuauauuu	chr2:42512815-42513065(+)$1	250	89	102	20.5454
auuuucuuuucuu	chr2:3478961-3479225(+)$1	264	85	98	20.8181
uuuuuguauuuua	chr14:39776518-39776786(+)$1	268	254	267	23.0000
uuuuuguauuuuu	chr5:133551921-133552171(-)$1	250	90	103	25.7272
AUUuucuuuuucu	chr7:91833401-91833682(-)$1	281	75	88	21.3636
AUUUUUAUUUUUG	chr1:236714029-236714244(-)$1	215	94	107	20.2727
auuuucuauuucu	chr2:42503328-42503606(+)$1	278	87	100	20.0000
Cuuuuuuuuuuug	chr10:120809105-120809362(-)$1	257	91	104	22.5454
auuuauuuuuuug	chr11:86783992-86784252(+)$1	260	92	105	20.1818
uuuuuguauuuuu	chr2:63136394-63136646(+)$1	252	90	103	25.7272
uuuuuguauuuuu	chr2:177159088-177159341(+)$1	253	90	103	25.7272
uuuuuguacuuuu	chr10:65191596-65191876(-)$1	280	254	267	21.2727
GUUUUCUUUUUUA	chr8:82589081-82589319(-)$1	238	35	48	20.7272
auuuuguauuuuu	chr6:166794255-166794530(-)$1	275	252	265	26.0000
auuuuguauuuuu	chr2:29128612-29128907(+)$1	295	84	97	26.0000
Auuuuguuuuuug	chr7:76236882-76237122(+)$1	240	73	86	25.5454
auuuuauuuuuug	chr16:54091924-54092181(+)$1	257	95	108	23.0909
uuuuuguauuuuu	chr3:37087114-37087383(+)$1	269	252	265	25.7272
uuuuuuuuuuuug	chr17:44123693-44123998(-)$1	305	92	105	24.4545
uguuuguuuuuuu	chr16:28620923-28621183(-)$1	260	91	104	22.5454
AUUUUUUUUUUCC	chr2:21248414-21248652(-)$1	238	157	170	19.6363
Auuuucauuuuuu	chr20:32183271-32183533(+)$1	262	73	86	20.9999
guuuuguuuuuuu	chrX:70770146-70770397(+)$1	251	92	105	25.3636
guuguguuuuuuu	chr2:71647139-71647440(+)$1	301	86	99	20.7272
uuuuuguacuuuu	chrX:132696347-132696603(-)$1	256	94	107	21.2727
UUUUUUUUUUUUG	chrX:122736716-122736966(-)$1	250	26	39	24.4545
uuuuuguauuuuu	chr12:102128290-102128544(+)$1	254	202	215	25.7272
auuuuguauuuuu	chr20:62499220-62499461(+)$1	241	212	225	26.0000
auuuuguuuucau	chr2:178342630-178342902(+)$1	272	178	191	18.6363
uuuuuguauuuuu	chr11:96021537-96021810(-)$1	273	254	267	25.7272
ACuuuuuuuuuuu	chr2:191761704-191761919(+)$1	215	53	66	22.1818
AUuuuuuuucuuu	chr2:42435507-42435744(+)$1	237	57	70	21.9090
auucuuuuuuuuu	chr12:67676135-67676388(+)$1	253	90	103	21.9999
uuuugguauuuuu	chr2:113408890-113409166(+)$1	276	261	274	21.0909
uuuuugucuuuuu	chr1:29067725-29067990(+)$1	265	252	265	24.0909
auuuuuuuuuuug	chr10:958654-958904(-)$1	250	223	236	24.7272
auuuucuuuuuga	chr16:75394106-75394371(-)$1	265	47	60	18.4545
uucuuguuuuuuu	chr22:40593197-40593458(+)$1	261	89	102	22.2727
auuuuuuuuuuuu	chr10:80838385-80838642(+)$1	257	90	103	26.5454
UUUUUUUUUUUUG	chr2:242246261-242246491(-)$1	230	93	106	24.4545
auuuuuuuuuuag	chr8:87357542-87357839(+)$1	297	270	283	20.6363
uuuuuguaauuuu	chr16:57826628-57826881(-)$1	253	235	248	21.2727
guuuuguuuguuu	chr15:99380235-99380496(+)$1	261	227	240	20.7272
UUUUUGUUUUUUG	chr17:28471203-28471461(+)$1	258	6	19	25.2727
UUUUUGAAUUUUG	chr19:8520549-8520810(+)$1	261	232	245	19.4545

#otherMatches

#Struct PSSM
:::::::::::::	chr20:35476234-35476487(-)$1	253	87	100	25.1818
:::::::::::::	chr8:64101182-64101435(+)$1	253	31	44	20.2727
uuuuuuuuuuuuc	chr17:27607857-27608107(-)$1	250	92	105	19.9090
nggggggg:::::	chr2:61150208-61150459(+)$1	251	92	105	25.1818
::::::::::::=	chr17:60120407-60120623(-)$1	216	94	107	24.4545
ggg[ddddooooo	chr18:3006889-3007103(-)$1	214	58	71	19.9090
GGGGWWWWWWWWW	chr19:2119811-2120066(-)$1	255	93	106	25.4545
::hhhhhhhhlll	chr1:2196161-2196432(+)$1	271	94	107	20.8181
=========####	chr9:21815513-21815771(+)$1	258	33	46	19.7272
:::::::::::::	chr16:14641423-14641676(-)$1	253	41	54	19.3636
==+++++++++++	chr2:42512815-42513065(+)$1	250	89	102	20.5454
:::::::::cccq	chr2:3478961-3479225(+)$1	264	85	98	20.8181
HHHH}FFFFFF::	chr14:39776518-39776786(+)$1	268	254	267	23.0000
tttttttttttee	chr5:133551921-133552171(-)$1	250	90	103	25.7272
:::::::::::::	chr7:91833401-91833682(-)$1	281	75	88	21.3636
:::::::::::gg	chr1:236714029-236714244(-)$1	215	94	107	20.2727
ellleeeeecccm	chr2:42503328-42503606(+)$1	278	87	100	20.0000
ffff:::::::::	chr10:120809105-120809362(-)$1	257	91	104	22.5454
::::::::::::=	chr11:86783992-86784252(+)$1	260	92	105	20.1818
ffffffoooooof	chr2:63136394-63136646(+)$1	252	90	103	25.7272
qqqqqbb777777	chr2:177159088-177159341(+)$1	253	90	103	25.7272
==ccc[ddddlll	chr10:65191596-65191876(-)$1	280	254	267	21.2727
vvvvveeeee666	chr8:82589081-82589319(-)$1	238	35	48	20.7272
___JJJJJJJJJJ	chr6:166794255-166794530(-)$1	275	252	265	26.0000
b[ccc[ggggggg	chr2:29128612-29128907(+)$1	295	84	97	26.0000
mmmmeeeee4444	chr7:76236882-76237122(+)$1	240	73	86	25.5454
DDDDLLLDDDD{D	chr16:54091924-54092181(+)$1	257	95	108	23.0909
tttttttttttee	chr3:37087114-37087383(+)$1	269	252	265	25.7272
:::::::::::ii	chr17:44123693-44123998(-)$1	305	92	105	24.4545
^^^^^^^^^^^^^	chr16:28620923-28621183(-)$1	260	91	104	22.5454
FF:::::::::::	chr2:21248414-21248652(-)$1	238	157	170	19.6363
:::::::::::::	chr20:32183271-32183533(+)$1	262	73	86	20.9999
::::::::::::A	chrX:70770146-70770397(+)$1	251	92	105	25.3636
zzziiiiiiiii8	chr2:71647139-71647440(+)$1	301	86	99	20.7272
=+++++++++++d	chrX:132696347-132696603(-)$1	256	94	107	21.2727
vvvvvvvvvvvva	chrX:122736716-122736966(-)$1	250	26	39	24.4545
="""bb"""eeee	chr12:102128290-102128544(+)$1	254	202	215	25.7272
essssssssssee	chr20:62499220-62499461(+)$1	241	212	225	26.0000
xxxxxxxxxxggg	chr2:178342630-178342902(+)$1	272	178	191	18.6363
:dddd[bbmmmmb	chr11:96021537-96021810(-)$1	273	254	267	25.7272
EEEE:::::::::	chr2:191761704-191761919(+)$1	215	53	66	22.1818
:::::::::::::	chr2:42435507-42435744(+)$1	237	57	70	21.9090
ccc]bb22fffff	chr12:67676135-67676388(+)$1	253	90	103	21.9999
GGGGGGG::::::	chr2:113408890-113409166(+)$1	276	261	274	21.0909
FF:::::::::::	chr1:29067725-29067990(+)$1	265	252	265	24.0909
::::::::JJJJJ	chr10:958654-958904(-)$1	250	223	236	24.7272
JJJJJJJKKFFFF	chr16:75394106-75394371(-)$1	265	47	60	18.4545
%%%dddd%%%%%%	chr22:40593197-40593458(+)$1	261	89	102	22.2727
III::::::::::	chr10:80838385-80838642(+)$1	257	90	103	26.5454
H}JJJJJJJJJJ=	chr2:242246261-242246491(-)$1	230	93	106	24.4545
::::::::::::H	chr8:87357542-87357839(+)$1	297	270	283	20.6363
:::::::::::::	chr16:57826628-57826881(-)$1	253	235	248	21.2727
d^^^^^^^^^^^^	chr15:99380235-99380496(+)$1	261	227	240	20.7272
HHH:::ggggggg	chr17:28471203-28471461(+)$1	258	6	19	25.2727
gglllgggggggd	chr19:8520549-8520810(+)$1	261	232	245	19.4545

#DB
.............	chr20:35476234-35476487(-)$1	1	87	100	25.1818
.............	chr8:64101182-64101435(+)$1	1	31	44	20.2727
............)	chr17:27607857-27608107(-)$1	1	92	105	19.9090
.))))))).....	chr2:61150208-61150459(+)$1	1	92	105	25.1818
............(	chr17:60120407-60120623(-)$1	1	94	107	24.4545
(((.((((.....	chr18:3006889-3007103(-)$1	1	58	71	19.9090
((((.........	chr19:2119811-2120066(-)$1	1	93	106	25.4545
..((((((((...	chr1:2196161-2196432(+)$1	1	94	107	20.8181
(((((((((....	chr9:21815513-21815771(+)$1	1	33	46	19.7272
.............	chr16:14641423-14641676(-)$1	1	41	54	19.3636
((...........	chr2:42512815-42513065(+)$1	1	89	102	20.5454
.........(((.	chr2:3478961-3479225(+)$1	1	85	98	20.8181
)))).))))))..	chr14:39776518-39776786(+)$1	1	254	267	23.0000
...........))	chr5:133551921-133552171(-)$1	1	90	103	25.7272
.............	chr7:91833401-91833682(-)$1	1	75	88	21.3636
...........((	chr1:236714029-236714244(-)$1	1	94	107	20.2727
(...)))))(((.	chr2:42503328-42503606(+)$1	1	87	100	20.0000
)))).........	chr10:120809105-120809362(-)$1	1	91	104	22.5454
............(	chr11:86783992-86784252(+)$1	1	92	105	20.1818
((((((......)	chr2:63136394-63136646(+)$1	1	90	103	25.7272
.....))......	chr2:177159088-177159341(+)$1	1	90	103	25.7272
))(((.((((...	chr10:65191596-65191876(-)$1	1	254	267	21.2727
.....)))))...	chr8:82589081-82589319(-)$1	1	35	48	20.7272
...))))))))))	chr6:166794255-166794530(-)$1	1	252	265	26.0000
(.(((.(((((((	chr2:29128612-29128907(+)$1	1	84	97	26.0000
....)))))....	chr7:76236882-76237122(+)$1	1	73	86	25.5454
((((...((((.(	chr16:54091924-54092181(+)$1	1	95	108	23.0909
...........))	chr3:37087114-37087383(+)$1	1	252	265	25.7272
...........((	chr17:44123693-44123998(-)$1	1	92	105	24.4545
.............	chr16:28620923-28621183(-)$1	1	91	104	22.5454
))...........	chr2:21248414-21248652(-)$1	1	157	170	19.6363
.............	chr20:32183271-32183533(+)$1	1	73	86	20.9999
............(	chrX:70770146-70770397(+)$1	1	92	105	25.3636
...))))))))).	chr2:71647139-71647440(+)$1	1	86	99	20.7272
(...........(	chrX:132696347-132696603(-)$1	1	94	107	21.2727
............)	chrX:122736716-122736966(-)$1	1	26	39	24.4545
(...((...((((	chr12:102128290-102128544(+)$1	1	202	215	25.7272
(..........))	chr20:62499220-62499461(+)$1	1	212	225	26.0000
..........)))	chr2:178342630-178342902(+)$1	1	178	191	18.6363
.((((.((....)	chr11:96021537-96021810(-)$1	1	254	267	25.7272
((((.........	chr2:191761704-191761919(+)$1	1	53	66	22.1818
.............	chr2:42435507-42435744(+)$1	1	57	70	21.9090
))).))..)))))	chr12:67676135-67676388(+)$1	1	90	103	21.9999
)))))))......	chr2:113408890-113409166(+)$1	1	261	274	21.0909
))...........	chr1:29067725-29067990(+)$1	1	252	265	24.0909
........)))))	chr10:958654-958904(-)$1	1	223	236	24.7272
(((((((..((((	chr16:75394106-75394371(-)$1	1	47	60	18.4545
...((((......	chr22:40593197-40593458(+)$1	1	89	102	22.2727
(((..........	chr10:80838385-80838642(+)$1	1	90	103	26.5454
).))))))))))(	chr2:242246261-242246491(-)$1	1	93	106	24.4545
............)	chr8:87357542-87357839(+)$1	1	270	283	20.6363
.............	chr16:57826628-57826881(-)$1	1	235	248	21.2727
(............	chr15:99380235-99380496(+)$1	1	227	240	20.7272
(((...(((((((	chr17:28471203-28471461(+)$1	1	6	19	25.2727
((...))))))))	chr19:8520549-8520810(+)$1	1	232	245	19.4545

#PSSM
u : 0.30	a : 0.27	A : 0.20	U : 0.10	g : 0.05	c : 0.01	C : 0.01	G : 0.01	
u : 0.69	U : 0.23	C : 0.03	c : 0.01	g : 0.01	
u : 0.74	U : 0.23	c : 0.01	
u : 0.72	U : 0.21	c : 0.03	g : 0.01	
u : 0.74	U : 0.20	A : 0.01	a : 0.01	g : 0.01	
g : 0.41	u : 0.23	U : 0.10	c : 0.10	G : 0.09	C : 0.01	a : 0.01	
u : 0.76	U : 0.18	A : 0.03	a : 0.01	
u : 0.45	a : 0.30	U : 0.16	A : 0.03	G : 0.01	c : 0.01	
u : 0.72	U : 0.20	c : 0.03	A : 0.01	a : 0.01	
u : 0.72	U : 0.21	a : 0.01	c : 0.01	g : 0.01	
u : 0.74	U : 0.21	c : 0.03	
u : 0.69	U : 0.18	c : 0.03	a : 0.03	A : 0.01	C : 0.01	g : 0.01	
u : 0.58	g : 0.16	G : 0.09	C : 0.05	U : 0.03	A : 0.03	a : 0.03	

#score	1245.1818181818185
#seq	55
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_UTR_m3_run2.nuc.txt

#NT
CUGC	chr3:47889554-47889796(+)$1	242	91	95	11.9999
CUGC	chr13:98995865-98996181(+)$1	316	50	54	11.9999
CUGC	chr3:184038271-184038555(+)$1	284	37	41	11.9999
CUGC	chr15:74914732-74915013(+)$1	281	49	53	11.9999
CUGC	chr3:187451364-187451594(-)$1	230	31	35	11.9999
CUGC	chr2:86709694-86709972(+)$1	278	145	149	11.9999
CUGC	chr6:31237174-31237401(-)$1	227	56	60	11.9999
CUGC	chr16:697620-697887(+)$1	267	15	19	11.9999
CUGC	chr11:47433716-47434030(+)$1	314	59	63	11.9999
CUGC	chr17:34867109-34867383(-)$1	274	101	105	11.9999
CUGC	chr6:30166786-30167063(-)$1	277	77	81	11.9999
CUGC	chr16:29985862-29986104(+)$1	242	35	39	11.9999
CUGC	chr16:84215906-84216150(-)$1	244	23	27	11.9999
CUGC	chr12:133237585-133237845(-)$1	260	64	68	11.9999
CUGC	chr1:155880425-155880713(-)$1	288	190	194	11.9999
CUGC	chr17:4594599-4594883(-)$1	284	93	97	11.9999
CUGC	chr19:10464532-10464765(-)$1	233	31	35	11.9999
CUGC	chr11:6501152-6501435(-)$1	283	90	94	11.9999
CUGC	chr14:103986822-103987071(-)$1	249	191	195	11.9999
CUGC	chr16:67262280-67262559(+)$1	279	17	21	11.9999
CUGC	chr17:79866765-79867028(-)$1	263	4	8	11.9999
CUGC	chr4:124319559-124319855(+)$1	296	199	203	11.9999
CUGC	chr14:24586772-24587022(+)$1	250	70	74	11.9999
CUGC	chr6:11191287-11191623(-)$1	336	204	208	11.9999
CUGC	chr3:48667012-48667264(-)$1	252	83	87	11.9999
CUGC	chr9:139700408-139700694(+)$1	286	70	74	11.9999
cugc	chr9:117002399-117002637(+)$1	238	29	33	11.9999
CUGC	chr7:5569354-5569593(-)$1	239	22	26	11.9999
CUGC	chr4:77987387-77987669(-)$1	282	6	10	11.9999
CUGC	chr13:111287653-111287952(+)$1	299	293	297	11.9999
CUGC	chr10:77158304-77158560(-)$1	256	135	139	11.9999
CUGC	chr19:17971959-17972222(+)$1	263	31	35	11.9999
CUGC	chr10:99218336-99218590(-)$1	254	89	93	11.9999
CUGC	chr17:7128030-7128249(+)$1	219	83	87	11.9999
CUGC	chr16:87743016-87743341(-)$1	325	21	25	11.9999
CUGC	chr1:231361057-231361393(-)$1	336	329	333	11.9999
CUGC	chr14:91976194-91976436(-)$1	242	82	86	11.9999
CUGC	chr6:31931309-31931539(+)$1	230	193	197	11.9999
CUGC	chr9:117004369-117004593(+)$1	224	37	41	11.9999
cugc	chr3:53874919-53875150(-)$1	231	25	29	11.9999
CUGC	chr19:15514718-15514945(-)$1	227	25	29	11.9999
CUGC	chr19:45417984-45418250(+)$1	266	45	49	11.9999
CUGC	chr6:86351047-86351313(-)$1	266	211	215	11.9999
CUGC	chr1:151288819-151289164(-)$1	345	229	233	11.9999
CUGC	chr16:24741060-24741363(+)$1	303	36	40	11.9999
CUGC	chr11:611817-612048(+)$1	231	107	111	11.9999
CUGC	chr8:134251231-134251487(-)$1	256	2	6	11.9999
CUGC	chr2:131103026-131103274(+)$1	248	96	100	11.9999
CUGC	chr12:46760843-46761090(-)$1	247	26	30	11.9999
CUGC	chr17:73974598-73974927(-)$1	329	121	125	11.9999
CUGC	chr17:61904786-61905087(+)$1	301	48	52	11.9999
CUGC	chr14:74759856-74760107(-)$1	251	193	197	11.9999
CUGC	chr6:31901281-31901506(+)$1	225	81	85	11.9999
CUGC	chr11:76506539-76506824(+)$1	285	133	137	11.9999
CUGC	chr2:242611506-242611764(+)$1	258	9	13	11.9999
CUGC	chr12:53837021-53837289(+)$1	268	137	141	11.9999
CUGC	chr6:56380268-56380521(-)$1	253	93	97	11.9999
CUGC	chr20:60733616-60734019(+)$1	403	338	342	11.9999
CUGC	chr3:142761845-142762071(+)$1	226	75	79	11.9999
CUGC	chr8:145153558-145153837(-)$1	279	20	24	11.9999
CUGC	chr2:234171690-234171976(+)$1	286	64	68	11.9999
CUGC	chr17:17717847-17718091(-)$1	244	24	28	11.9999
CUGC	chr11:65293470-65293720(+)$1	250	150	154	11.9999
CUGC	chr19:15233896-15234170(-)$1	274	170	174	11.9999
CUGC	chr5:179321284-179321591(-)$1	307	4	8	11.9999
CUGC	chr14:21548904-21549164(+)$1	260	4	8	11.9999
CUGC	chr2:128050046-128050300(-)$1	254	34	38	11.9999
CUGC	chr3:191047353-191047671(+)$1	318	26	30	11.9999
CUGC	chr2:24307098-24307350(-)$1	252	13	17	11.9999
CUGC	chr8:134260874-134261168(-)$1	294	148	152	11.9999
CUGC	chr1:23884765-23885037(-)$1	272	57	61	11.9999
CUGC	chr16:715580-715816(+)$1	236	38	42	11.9999
CUGC	chr7:128851741-128852013(+)$1	272	179	183	11.9999
CUGC	chr19:19115019-19115317(-)$1	298	170	174	11.9999
CUGC	chr3:184102702-184102986(+)$1	284	105	109	11.9999
CUGC	chr16:29810834-29811063(+)$1	229	12	16	11.9999
CUGC	chr1:8074307-8074581(-)$1	274	140	144	11.9999

#otherMatches

#Struct PSSM
eeee	chr16:77228081-77228348(+)$1	267	230	234	11.9999
pppp	chr3:47889554-47889796(+)$1	242	91	95	11.9999
BHHH	chr13:98995865-98996181(+)$1	316	50	54	11.9999
====	chr3:184038271-184038555(+)$1	284	37	41	11.9999
GGGG	chr15:74914732-74915013(+)$1	281	49	53	11.9999
ffff	chr3:187451364-187451594(-)$1	230	31	35	11.9999
hhhh	chr2:86709694-86709972(+)$1	278	145	149	11.9999
E{BB	chr6:31237174-31237401(-)$1	227	56	60	11.9999
nnnn	chr16:697620-697887(+)$1	267	15	19	11.9999
ppee	chr11:47433716-47434030(+)$1	314	59	63	11.9999
ee::	chr17:34867109-34867383(-)$1	274	101	105	11.9999
hhhh	chr6:30166786-30167063(-)$1	277	77	81	11.9999
hhhh	chr16:29985862-29986104(+)$1	242	35	39	11.9999
nndd	chr16:84215906-84216150(-)$1	244	23	27	11.9999
bb]b	chr12:133237585-133237845(-)$1	260	64	68	11.9999
eeee	chr1:155880425-155880713(-)$1	288	190	194	11.9999
b[cc	chr17:4594599-4594883(-)$1	284	93	97	11.9999
JJJJ	chr19:10464532-10464765(-)$1	233	31	35	11.9999
f[a[	chr11:6501152-6501435(-)$1	283	90	94	11.9999
pppp	chr14:103986822-103987071(-)$1	249	191	195	11.9999
====	chr16:67262280-67262559(+)$1	279	17	21	11.9999
D{BB	chr17:79866765-79867028(-)$1	263	4	8	11.9999
gggg	chr4:124319559-124319855(+)$1	296	199	203	11.9999
g]dd	chr14:24586772-24587022(+)$1	250	70	74	11.9999
HH}F	chr6:11191287-11191623(-)$1	336	204	208	11.9999
C{EE	chr3:48667012-48667264(-)$1	252	83	87	11.9999
f:dd	chr9:139700408-139700694(+)$1	286	70	74	11.9999
pppp	chr9:117002399-117002637(+)$1	238	29	33	11.9999
DDD{	chr7:5569354-5569593(-)$1	239	22	26	11.9999
FFFF	chr4:77987387-77987669(-)$1	282	6	10	11.9999
}EEE	chr13:111287653-111287952(+)$1	299	293	297	11.9999
ddd]	chr10:77158304-77158560(-)$1	256	135	139	11.9999
bb!!	chr19:17971959-17972222(+)$1	263	31	35	11.9999
gggg	chr10:99218336-99218590(-)$1	254	89	93	11.9999
DDDD	chr17:7128030-7128249(+)$1	219	83	87	11.9999
JJJJ	chr16:87743016-87743341(-)$1	325	21	25	11.9999
__DD	chr1:231361057-231361393(-)$1	336	329	333	11.9999
gggg	chr14:91976194-91976436(-)$1	242	82	86	11.9999
5555	chr6:31931309-31931539(+)$1	230	193	197	11.9999
ddd:	chr9:117004369-117004593(+)$1	224	37	41	11.9999
rrgg	chr3:53874919-53875150(-)$1	231	25	29	11.9999
FFF:	chr19:15514718-15514945(-)$1	227	25	29	11.9999
e]cc	chr19:45417984-45418250(+)$1	266	45	49	11.9999
mma]	chr6:86351047-86351313(-)$1	266	211	215	11.9999
ddd3	chr1:151288819-151289164(-)$1	345	229	233	11.9999
e[gg	chr16:24741060-24741363(+)$1	303	36	40	11.9999
ff]d	chr11:611817-612048(+)$1	231	107	111	11.9999
dd[f	chr8:134251231-134251487(-)$1	256	2	6	11.9999
bb]b	chr2:131103026-131103274(+)$1	248	96	100	11.9999
hh!!	chr12:46760843-46761090(-)$1	247	26	30	11.9999
hhhh	chr17:73974598-73974927(-)$1	329	121	125	11.9999
eenn	chr17:61904786-61905087(+)$1	301	48	52	11.9999
EEE}	chr14:74759856-74760107(-)$1	251	193	197	11.9999
ee]b	chr6:31901281-31901506(+)$1	225	81	85	11.9999
CC::	chr11:76506539-76506824(+)$1	285	133	137	11.9999
ffff	chr2:242611506-242611764(+)$1	258	9	13	11.9999
rrbb	chr12:53837021-53837289(+)$1	268	137	141	11.9999
dddd	chr6:56380268-56380521(-)$1	253	93	97	11.9999
ddd]	chr20:60733616-60734019(+)$1	403	338	342	11.9999
bb!!	chr3:142761845-142762071(+)$1	226	75	79	11.9999
ffff	chr8:145153558-145153837(-)$1	279	20	24	11.9999
cc[a	chr2:234171690-234171976(+)$1	286	64	68	11.9999
:BB{	chr17:17717847-17718091(-)$1	244	24	28	11.9999
eeee	chr11:65293470-65293720(+)$1	250	150	154	11.9999
gggg	chr19:15233896-15234170(-)$1	274	170	174	11.9999
dddo	chr5:179321284-179321591(-)$1	307	4	8	11.9999
d[cc	chr14:21548904-21549164(+)$1	260	4	8	11.9999
FFFF	chr2:128050046-128050300(-)$1	254	34	38	11.9999
f555	chr3:191047353-191047671(+)$1	318	26	30	11.9999
!!ee	chr2:24307098-24307350(-)$1	252	13	17	11.9999
f[cc	chr8:134260874-134261168(-)$1	294	148	152	11.9999
cmmm	chr1:23884765-23885037(-)$1	272	57	61	11.9999
ccCC	chr16:715580-715816(+)$1	236	38	42	11.9999
b[bb	chr7:128851741-128852013(+)$1	272	179	183	11.9999
eeee	chr19:19115019-19115317(-)$1	298	170	174	11.9999
]a]d	chr3:184102702-184102986(+)$1	284	105	109	11.9999
F{DD	chr16:29810834-29811063(+)$1	229	12	16	11.9999
EEEE	chr1:8074307-8074581(-)$1	274	140	144	11.9999

#DB
))))	chr16:77228081-77228348(+)$1	1	230	234	11.9999
....	chr3:47889554-47889796(+)$1	1	91	95	11.9999
((((	chr13:98995865-98996181(+)$1	1	50	54	11.9999
((((	chr3:184038271-184038555(+)$1	1	37	41	11.9999
((((	chr15:74914732-74915013(+)$1	1	49	53	11.9999
))))	chr3:187451364-187451594(-)$1	1	31	35	11.9999
))))	chr2:86709694-86709972(+)$1	1	145	149	11.9999
(.((	chr6:31237174-31237401(-)$1	1	56	60	11.9999
....	chr16:697620-697887(+)$1	1	15	19	11.9999
..))	chr11:47433716-47434030(+)$1	1	59	63	11.9999
))..	chr17:34867109-34867383(-)$1	1	101	105	11.9999
))))	chr6:30166786-30167063(-)$1	1	77	81	11.9999
((((	chr16:29985862-29986104(+)$1	1	35	39	11.9999
..))	chr16:84215906-84216150(-)$1	1	23	27	11.9999
)).)	chr12:133237585-133237845(-)$1	1	64	68	11.9999
((((	chr1:155880425-155880713(-)$1	1	190	194	11.9999
(.((	chr17:4594599-4594883(-)$1	1	93	97	11.9999
((((	chr19:10464532-10464765(-)$1	1	31	35	11.9999
(.(.	chr11:6501152-6501435(-)$1	1	90	94	11.9999
....	chr14:103986822-103987071(-)$1	1	191	195	11.9999
((((	chr16:67262280-67262559(+)$1	1	17	21	11.9999
(.((	chr17:79866765-79867028(-)$1	1	4	8	11.9999
))))	chr4:124319559-124319855(+)$1	1	199	203	11.9999
).))	chr14:24586772-24587022(+)$1	1	70	74	11.9999
)).)	chr6:11191287-11191623(-)$1	1	204	208	11.9999
(.((	chr3:48667012-48667264(-)$1	1	83	87	11.9999
).((	chr9:139700408-139700694(+)$1	1	70	74	11.9999
....	chr9:117002399-117002637(+)$1	1	29	33	11.9999
(((.	chr7:5569354-5569593(-)$1	1	22	26	11.9999
((((	chr4:77987387-77987669(-)$1	1	6	10	11.9999
.)))	chr13:111287653-111287952(+)$1	1	293	297	11.9999
))).	chr10:77158304-77158560(-)$1	1	135	139	11.9999
((..	chr19:17971959-17972222(+)$1	1	31	35	11.9999
((((	chr10:99218336-99218590(-)$1	1	89	93	11.9999
((((	chr17:7128030-7128249(+)$1	1	83	87	11.9999
((((	chr16:87743016-87743341(-)$1	1	21	25	11.9999
..))	chr1:231361057-231361393(-)$1	1	329	333	11.9999
((((	chr14:91976194-91976436(-)$1	1	82	86	11.9999
....	chr6:31931309-31931539(+)$1	1	193	197	11.9999
))).	chr9:117004369-117004593(+)$1	1	37	41	11.9999
..))	chr3:53874919-53875150(-)$1	1	25	29	11.9999
(((.	chr19:15514718-15514945(-)$1	1	25	29	11.9999
).))	chr19:45417984-45418250(+)$1	1	45	49	11.9999
..).	chr6:86351047-86351313(-)$1	1	211	215	11.9999
))).	chr1:151288819-151289164(-)$1	1	229	233	11.9999
(.((	chr16:24741060-24741363(+)$1	1	36	40	11.9999
)).)	chr11:611817-612048(+)$1	1	107	111	11.9999
((.(	chr8:134251231-134251487(-)$1	1	2	6	11.9999
)).)	chr2:131103026-131103274(+)$1	1	96	100	11.9999
((..	chr12:46760843-46761090(-)$1	1	26	30	11.9999
))))	chr17:73974598-73974927(-)$1	1	121	125	11.9999
((..	chr17:61904786-61905087(+)$1	1	48	52	11.9999
))).	chr14:74759856-74760107(-)$1	1	193	197	11.9999
)).)	chr6:31901281-31901506(+)$1	1	81	85	11.9999
))..	chr11:76506539-76506824(+)$1	1	133	137	11.9999
))))	chr2:242611506-242611764(+)$1	1	9	13	11.9999
..))	chr12:53837021-53837289(+)$1	1	137	141	11.9999
((((	chr6:56380268-56380521(-)$1	1	93	97	11.9999
))).	chr20:60733616-60734019(+)$1	1	338	342	11.9999
((..	chr3:142761845-142762071(+)$1	1	75	79	11.9999
))))	chr8:145153558-145153837(-)$1	1	20	24	11.9999
((.(	chr2:234171690-234171976(+)$1	1	64	68	11.9999
.((.	chr17:17717847-17718091(-)$1	1	24	28	11.9999
))))	chr11:65293470-65293720(+)$1	1	150	154	11.9999
((((	chr19:15233896-15234170(-)$1	1	170	174	11.9999
(((.	chr5:179321284-179321591(-)$1	1	4	8	11.9999
(.((	chr14:21548904-21549164(+)$1	1	4	8	11.9999
((((	chr2:128050046-128050300(-)$1	1	34	38	11.9999
)...	chr3:191047353-191047671(+)$1	1	26	30	11.9999
..((	chr2:24307098-24307350(-)$1	1	13	17	11.9999
(.((	chr8:134260874-134261168(-)$1	1	148	152	11.9999
(...	chr1:23884765-23885037(-)$1	1	57	61	11.9999
))((	chr16:715580-715816(+)$1	1	38	42	11.9999
(.((	chr7:128851741-128852013(+)$1	1	179	183	11.9999
))))	chr19:19115019-19115317(-)$1	1	170	174	11.9999
.).)	chr3:184102702-184102986(+)$1	1	105	109	11.9999
(.((	chr16:29810834-29811063(+)$1	1	12	16	11.9999
))))	chr1:8074307-8074581(-)$1	1	140	144	11.9999

#PSSM
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	

#score	935.9999999999995
#seq	78
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_UTR_m1_run2.nuc.txt

#NT
ggcgcggcc	chr1:220267567-220267818(+)$1	251	21	30	16.2592
GGCGCGGCG	chr12:56522206-56522492(+)$1	286	32	41	13.2962
ggggcgccc	chr19:1206013-1206269(+)$1	256	173	182	15.2407
GUGGCGGCG	chr1:174969031-174969286(+)$1	255	79	88	13.3888
GUGGCGGCC	chr19:10790415-10790704(+)$1	289	20	29	16.3518
GGGGCUGCG	chr1:19438923-19439184(-)$1	261	114	123	15.1481
GGGGCGGGG	chr19:2151397-2151641(-)$1	244	1	10	13.6666
GGGGAGGCG	chrX:153592304-153592533(-)$1	229	109	118	12.6481
GGGGCUGAC	chrX:153589607-153589844(-)$1	237	34	43	14.4999
ggggccgcc	chr22:23522920-23523154(+)$1	234	127	136	17.5555
GGGGCUUCC	chr6:31760483-31760716(-)$1	233	211	220	13.3888
GGGGCGGGC	chr11:62303855-62304118(-)$1	263	129	138	16.6296
GGGGCUGCG	chr3:184045047-184045297(+)$1	250	133	142	15.1481
GGGGCGGGC	chr9:111775541-111775886(-)$1	345	35	44	16.6296
CGGGCGGCC	chrX:153587627-153587835(-)$1	208	72	81	15.4259
GGAGCAGCC	chr3:196230090-196230386(-)$1	296	56	65	13.3888
CGGGCGGCC	chrX:153587639-153587874(-)$1	235	111	120	15.4259
GGGGCGGGC	chr5:154135166-154135405(+)$1	239	136	145	16.6296
ggggccgcc	chr7:150068834-150069060(+)$1	226	145	154	17.5555
ggggcggcg	chr19:59056222-59056471(+)$1	249	59	68	16.9999
GGGGCUGAC	chrX:153589652-153589873(-)$1	221	63	72	14.4999
ggggcggAC	chr1:19536574-19536846(-)$1	272	167	176	16.3518
GUGGCGGCG	chr1:174969095-174969366(+)$1	271	15	24	13.3888
GCUGCGGCC	chr8:124408501-124408784(-)$1	283	65	74	12.6481
GGGGCUGAC	chr19:41131676-41131941(+)$1	265	117	126	14.4999
GGGGCUGGC	chrX:153590710-153590942(-)$1	232	115	124	14.7777
ggggcgggc	chr13:42846191-42846465(+)$1	274	40	49	16.6296
GGGGCUGCU	chr7:72936337-72936645(-)$1	308	148	157	14.4074
GGUGCGGCC	chr17:57697360-57697569(+)$1	209	173	182	16.3518
GCUGCGGCC	chr6:31750017-31750260(-)$1	243	67	76	12.6481
gggggggcc	chr9:139702291-139702571(+)$1	280	257	266	15.7037
GGCGCGGCG	chr2:96971050-96971321(-)$1	271	61	70	13.2962
GUGGCGGCC	chr22:21271972-21272199(+)$1	227	45	54	16.3518
ggggcgggc	chr7:156931664-156931945(+)$1	281	153	162	16.6296
GGGGCUGCC	chr2:62115430-62115677(-)$1	247	74	83	18.1111
GGGGUGGCC	chrX:153587875-153588091(-)$1	216	34	43	15.7962
GGGGCUGCC	chr5:138163113-138163376(+)$1	263	174	183	18.1111
GGGGCCGCC	chr11:118443080-118443365(+)$1	285	34	43	17.5555
GGGGUGGCC	chr12:124979676-124979940(-)$1	264	37	46	15.7962
GUGGCCGCC	chr7:98609856-98610136(+)$1	280	124	133	13.9444
ggcgcggcc	chr5:95067209-95067479(+)$1	270	9	18	16.2592
GGGGCAGCC	chr19:10433969-10434291(-)$1	322	155	164	17.3703
GGGGCUGCC	chr3:184052843-184053091(+)$1	248	9	18	18.1111
GGGGGGGCG	chr12:6716392-6716636(-)$1	244	7	16	12.7407
GCGGCGGCC	chr1:186344233-186344480(-)$1	247	224	233	16.2592
GGGGCAGCC	chr12:67663184-67663476(+)$1	292	144	153	17.3703
GGUGCCGCC	chr12:862277-862547(+)$1	270	2	11	13.9444
GGUGUGGCC	chrX:153592636-153592839(-)$1	203	132	141	12.1851
GCGGCGGCC	chr2:109335941-109336194(+)$1	253	235	244	16.2592
GGGGCGGCC	chr12:69202044-69202303(+)$1	259	5	14	19.9629
GGGGCCGCC	chr16:3767362-3767623(-)$1	261	145	154	17.5555
AGGGCGGCC	chr5:131892576-131892900(+)$1	324	103	112	15.3333
GGGGCAGCU	chr3:184045564-184045821(+)$1	257	163	172	13.6666

#otherMatches

#Struct PSSM
e:BBKKFFF	chr6:31759606-31759843(-)$1	237	139	148	14.1296
=========	chr1:220267567-220267818(+)$1	251	21	30	16.2592
ggg"""ggg	chr12:56522206-56522492(+)$1	286	32	41	13.2962
]hhhhhhhh	chr19:1206013-1206269(+)$1	256	173	182	15.2407
2dddd:fff	chr1:174969031-174969286(+)$1	255	79	88	13.3888
D{GGGGGGG	chr19:10790415-10790704(+)$1	289	20	29	16.3518
""cccmmmm	chr1:19438923-19439184(-)$1	261	114	123	15.1481
DDD{FFFFF	chr19:2151397-2151641(-)$1	244	1	10	13.6666
eeeee[bbm	chrX:153592304-153592533(-)$1	229	109	118	12.6481
dd[bb"""a	chrX:153589607-153589844(-)$1	237	34	43	14.4999
DDDD}CCC}	chr22:23522920-23523154(+)$1	234	127	136	17.5555
EEffffffl	chr6:31760483-31760716(-)$1	233	211	220	13.3888
iiiiiiii!	chr11:62303855-62304118(-)$1	263	129	138	16.6296
lffffffa[	chr3:184045047-184045297(+)$1	250	133	142	15.1481
eeennnnne	chr9:111775541-111775886(-)$1	345	35	44	16.6296
HHHHHeeee	chrX:153587627-153587835(-)$1	208	72	81	15.4259
gg4444bb2	chr3:196230090-196230386(-)$1	296	56	65	13.3888
HHHHHYYFF	chrX:153587639-153587874(-)$1	235	111	120	15.4259
eee]iiiii	chr5:154135166-154135405(+)$1	239	136	145	16.6296
:ffffff##	chr7:150068834-150069060(+)$1	226	145	154	17.5555
ggggggg]h	chr19:59056222-59056471(+)$1	249	59	68	16.9999
ffffff]dd	chrX:153589652-153589873(-)$1	221	63	72	14.4999
eee[bbmmm	chr1:19536574-19536846(-)$1	272	167	176	16.3518
B{CCCBBA{	chr1:174969095-174969366(+)$1	271	15	24	13.3888
fff[ccc""	chr8:124408501-124408784(-)$1	283	65	74	12.6481
eedddd$$$	chr19:41131676-41131941(+)$1	265	117	126	14.4999
mddddbbee	chrX:153590710-153590942(-)$1	232	115	124	14.7777
EEE{HHHHH	chr13:42846191-42846465(+)$1	274	40	49	16.6296
IIII::::G	chr7:72936337-72936645(-)$1	308	148	157	14.4074
eeeeeCCC}	chr17:57697360-57697569(+)$1	209	173	182	16.3518
iiiiii:ii	chr6:31750017-31750260(-)$1	243	67	76	12.6481
HHHHHHHYY	chr9:139702291-139702571(+)$1	280	257	266	15.7037
cccddddcc	chr2:96971050-96971321(-)$1	271	61	70	13.2962
HHHHHHHHD	chr22:21271972-21272199(+)$1	227	45	54	16.3518
hhheeeee!	chr7:156931664-156931945(+)$1	281	153	162	16.6296
eeee]dddd	chr2:62115430-62115677(-)$1	247	74	83	18.1111
ooooooddd	chrX:153587875-153588091(-)$1	216	34	43	15.7962
Geeeeebb"	chr5:138163113-138163376(+)$1	263	174	183	18.1111
qqqqqqeee	chr11:118443080-118443365(+)$1	285	34	43	17.5555
eeemmmmee	chr12:124979676-124979940(-)$1	264	37	46	15.7962
=========	chr7:98609856-98610136(+)$1	280	124	133	13.9444
BBLLLCCC{	chr5:95067209-95067479(+)$1	270	9	18	16.2592
gggggggbb	chr19:10433969-10434291(-)$1	322	155	164	17.3703
ccccc!!ff	chr3:184052843-184053091(+)$1	248	9	18	18.1111
GGGGGGG:h	chr12:6716392-6716636(-)$1	244	7	16	12.7407
EEEEEgggg	chr1:186344233-186344480(-)$1	247	224	233	16.2592
cccmmmmcc	chr12:67663184-67663476(+)$1	292	144	153	17.3703
EEEeeeeed	chr12:862277-862547(+)$1	270	2	11	13.9444
EEE}ACCC}	chrX:153592636-153592839(-)$1	203	132	141	12.1851
ggggggFFF	chr2:109335941-109336194(+)$1	253	235	244	16.2592
ffffbbmmm	chr12:69202044-69202303(+)$1	259	5	14	19.9629
hhhhhhhhn	chr16:3767362-3767623(-)$1	261	145	154	17.5555
:::gggggg	chr5:131892576-131892900(+)$1	324	103	112	15.3333
=========	chr3:184045564-184045821(+)$1	257	163	172	13.6666

#DB
).((..(((	chr6:31759606-31759843(-)$1	1	139	148	14.1296
)))))))))	chr1:220267567-220267818(+)$1	1	21	30	16.2592
(((...(((	chr12:56522206-56522492(+)$1	1	32	41	13.2962
.))))))))	chr19:1206013-1206269(+)$1	1	173	182	15.2407
.)))).(((	chr1:174969031-174969286(+)$1	1	79	88	13.3888
(.(((((((	chr19:10790415-10790704(+)$1	1	20	29	16.3518
..(((....	chr1:19438923-19439184(-)$1	1	114	123	15.1481
(((.(((((	chr19:2151397-2151641(-)$1	1	1	10	13.6666
(((((.((.	chrX:153592304-153592533(-)$1	1	109	118	12.6481
((.((...(	chrX:153589607-153589844(-)$1	1	34	43	14.4999
)))).))).	chr22:23522920-23523154(+)$1	1	127	136	17.5555
))((((((.	chr6:31760483-31760716(-)$1	1	211	220	13.3888
((((((((.	chr11:62303855-62304118(-)$1	1	129	138	16.6296
.))))))(.	chr3:184045047-184045297(+)$1	1	133	142	15.1481
(((.....)	chr9:111775541-111775886(-)$1	1	35	44	16.6296
)))))((((	chrX:153587627-153587835(-)$1	1	72	81	15.4259
))....)).	chr3:196230090-196230386(-)$1	1	56	65	13.3888
)))))..))	chrX:153587639-153587874(-)$1	1	111	120	15.4259
))).)))))	chr5:154135166-154135405(+)$1	1	136	145	16.6296
.((((((..	chr7:150068834-150069060(+)$1	1	145	154	17.5555
))))))).)	chr19:59056222-59056471(+)$1	1	59	68	16.9999
)))))).))	chrX:153589652-153589873(-)$1	1	63	72	14.4999
(((.((...	chr1:19536574-19536846(-)$1	1	167	176	16.3518
(.((((((.	chr1:174969095-174969366(+)$1	1	15	24	13.3888
(((.(((..	chr8:124408501-124408784(-)$1	1	65	74	12.6481
((((((...	chr19:41131676-41131941(+)$1	1	117	126	14.4999
.))))))((	chrX:153590710-153590942(-)$1	1	115	124	14.7777
(((.(((((	chr13:42846191-42846465(+)$1	1	40	49	16.6296
))))....(	chr7:72936337-72936645(-)$1	1	148	157	14.4074
)))))))).	chr17:57697360-57697569(+)$1	1	173	182	16.3518
)))))).((	chr6:31750017-31750260(-)$1	1	67	76	12.6481
)))))))..	chr9:139702291-139702571(+)$1	1	257	266	15.7037
(((((((((	chr2:96971050-96971321(-)$1	1	61	70	13.2962
(((((((((	chr22:21271972-21272199(+)$1	1	45	54	16.3518
((((((((.	chr7:156931664-156931945(+)$1	1	153	162	16.6296
)))).))))	chr2:62115430-62115677(-)$1	1	74	83	18.1111
......)))	chrX:153587875-153588091(-)$1	1	34	43	15.7962
)(((((((.	chr5:138163113-138163376(+)$1	1	174	183	18.1111
......)))	chr11:118443080-118443365(+)$1	1	34	43	17.5555
(((....))	chr12:124979676-124979940(-)$1	1	37	46	15.7962
)))))))))	chr7:98609856-98610136(+)$1	1	124	133	13.9444
((...(((.	chr5:95067209-95067479(+)$1	1	9	18	16.2592
)))))))))	chr19:10433969-10434291(-)$1	1	155	164	17.3703
(((((..((	chr3:184052843-184053091(+)$1	1	9	18	18.1111
(((((((.(	chr12:6716392-6716636(-)$1	1	7	16	12.7407
)))))((((	chr1:186344233-186344480(-)$1	1	224	233	16.2592
(((....))	chr12:67663184-67663476(+)$1	1	144	153	17.3703
(((((((((	chr12:862277-862547(+)$1	1	2	11	13.9444
))).)))).	chrX:153592636-153592839(-)$1	1	132	141	12.1851
)))))))))	chr2:109335941-109336194(+)$1	1	235	244	16.2592
((((((...	chr12:69202044-69202303(+)$1	1	5	14	19.9629
((((((((.	chr16:3767362-3767623(-)$1	1	145	154	17.5555
...((((((	chr5:131892576-131892900(+)$1	1	103	112	15.3333
(((((((((	chr3:184045564-184045821(+)$1	1	163	172	13.6666

#PSSM
G : 0.75	g : 0.18	C : 0.03	A : 0.01	
G : 0.62	g : 0.18	U : 0.09	C : 0.07	A : 0.01	
G : 0.66	g : 0.14	U : 0.09	c : 0.03	C : 0.03	A : 0.01	
G : 0.81	g : 0.18	
C : 0.72	c : 0.16	U : 0.05	A : 0.01	g : 0.01	G : 0.01	
G : 0.44	U : 0.22	g : 0.14	A : 0.07	C : 0.07	c : 0.03	
G : 0.79	g : 0.16	c : 0.01	U : 0.01	
C : 0.66	c : 0.12	G : 0.09	A : 0.07	g : 0.03	
C : 0.62	G : 0.16	c : 0.14	U : 0.03	g : 0.01	

#score	833.9259259259254
#seq	54
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_transcript_m1_run2.nuc.txt

#NT
UGG	chr11:838525-838859(+)$1	334	10	13	9.0000
UGG	chr3:194123571-194123819(-)$1	248	61	64	9.0000
UGG	chr11:60658251-60658512(-)$1	261	6	9	9.0000
ugg	chr16:74656117-74656373(-)$1	256	46	49	9.0000
UGG	chr1:151377083-151377324(-)$1	241	7	10	9.0000
UGG	chr1:12072162-12072469(+)$1	307	10	13	9.0000
UGG	chr5:32125572-32125829(-)$1	257	47	50	9.0000
UGG	chr12:56365453-56365675(+)$1	222	3	6	9.0000
ugg	chr14:100747340-100747585(+)$1	245	30	33	9.0000
UGG	chr19:5020330-5020711(+)$1	381	13	16	9.0000
UGG	chr19:2270531-2270772(+)$1	241	23	26	9.0000
UGG	chr17:20903598-20903859(-)$1	261	10	13	9.0000
UGG	chr17:56168093-56168323(+)$1	230	11	14	9.0000
ugg	chr6:86352527-86352824(-)$1	297	0	3	9.0000
UGG	chr14:69365168-69365526(-)$1	358	56	59	9.0000
UGG	chr16:15154615-15154962(-)$1	347	53	56	9.0000
UGG	chr2:28974739-28975006(+)$1	267	52	55	9.0000
UGG	chr10:102122362-102122611(+)$1	249	87	90	9.0000
ugg	chr21:46928344-46928616(+)$1	272	2	5	9.0000
UGG	chr2:30866579-30866892(+)$1	313	144	147	9.0000
UGG	chr20:49198380-49198681(+)$1	301	0	3	9.0000
UGG	chr20:1165410-1165701(-)$1	291	64	67	9.0000
UGG	chr16:11981330-11981605(-)$1	275	8	11	9.0000
UGG	chr22:20111988-20112218(+)$1	230	27	30	9.0000
UGG	chr7:135612922-135613144(-)$1	222	8	11	9.0000
UGG	chr12:112943887-112944134(+)$1	247	31	34	9.0000
UGG	chr16:88557075-88557322(+)$1	247	23	26	9.0000
UGG	chr17:47788139-47788399(-)$1	260	37	40	9.0000
UGG	chr17:42283544-42283839(-)$1	295	5	8	9.0000
UGG	chr10:102121435-102121662(+)$1	227	42	45	9.0000
UGG	chr3:49396700-49396924(-)$1	224	36	39	9.0000
UGG	chr17:73314647-73314902(-)$1	255	27	30	9.0000
ugg	chr15:89174810-89175101(+)$1	291	20	23	9.0000
UGG	chr12:56387364-56387622(+)$1	258	142	145	9.0000
ugG	chr17:56167547-56167771(+)$1	224	74	77	9.0000
UGG	chr1:33240376-33240627(+)$1	251	2	5	9.0000
UGG	chr12:98943438-98943722(+)$1	284	197	200	9.0000
UGG	chr1:166826125-166826397(-)$1	272	38	41	9.0000
UGG	chr8:141531884-141532141(-)$1	257	140	143	9.0000
UGG	chr1:15987730-15987997(+)$1	267	191	194	9.0000
UGG	chr1:27928608-27928872(-)$1	264	15	18	9.0000
ugg	chr2:97559944-97560159(-)$1	215	4	7	9.0000
UGG	chr6:24536885-24537196(+)$1	311	286	289	9.0000
UGG	chr1:162494528-162494746(+)$1	218	78	81	9.0000
UGG	chr1:36385766-36386003(+)$1	237	24	27	9.0000
UGG	chr1:974190-974446(+)$1	256	4	7	9.0000
UGG	chr8:141539124-141539420(-)$1	296	54	57	9.0000
UGG	chr12:49396285-49396614(-)$1	329	65	68	9.0000
UGG	chr16:3777252-3777574(-)$1	322	42	45	9.0000
ugg	chr7:44871646-44871912(-)$1	266	122	125	9.0000
UGG	chr1:1197701-1197951(-)$1	250	7	10	9.0000
UGG	chr11:64846151-64846428(-)$1	277	2	5	9.0000
UGG	chr6:42979679-42979934(+)$1	255	29	32	9.0000
UGG	chr11:777005-777295(-)$1	290	12	15	9.0000
UGG	chr1:44170368-44170640(+)$1	272	37	40	9.0000
UGG	chr1:115314947-115315223(-)$1	276	32	35	9.0000
UGG	chr4:1012625-1012878(+)$1	253	19	22	9.0000
ugg	chr19:878832-879110(-)$1	278	19	22	9.0000
UGG	chr5:139039668-139039933(+)$1	265	103	106	9.0000
UGG	chr7:137562932-137563186(-)$1	254	80	83	9.0000
ugg	chr6:160101449-160101692(-)$1	243	2	5	9.0000
ugg	chr22:20110930-20111160(+)$1	230	8	11	9.0000
UGG	chr1:154129036-154129240(-)$1	204	46	49	9.0000
UGG	chr5:137842177-137842485(-)$1	308	93	96	9.0000
UGG	chr9:139245287-139245559(+)$1	272	17	20	9.0000
UGG	chr10:81114097-81114388(+)$1	291	12	15	9.0000
UGG	chr2:131975705-131975985(+)$1	280	9	12	9.0000
UGG	chr14:53238557-53238810(+)$1	253	66	69	9.0000
UGG	chr3:17201885-17202141(-)$1	256	45	48	9.0000
UGG	chr11:111934239-111934489(+)$1	250	11	14	9.0000
UGG	chr1:230416082-230416379(+)$1	297	41	44	9.0000
UGG	chrX:150575461-150575693(+)$1	232	7	10	9.0000
UGG	chr17:56167664-56167902(+)$1	238	15	18	9.0000
UGG	chr16:89041427-89041678(-)$1	251	37	40	9.0000
UGG	chr11:59569022-59569268(+)$1	246	31	34	9.0000
UGG	chr1:19542589-19542834(-)$1	245	17	20	9.0000
UGG	chr2:70889613-70889871(-)$1	258	4	7	9.0000
UGG	chr1:6694965-6695228(-)$1	263	9	12	9.0000
UGG	chr7:75957575-75957822(-)$1	247	26	29	9.0000
UGG	chr8:71024750-71024993(-)$1	243	123	126	9.0000
UGG	chr17:38613505-38613871(+)$1	366	2	5	9.0000
UGG	chr5:150089412-150089636(-)$1	224	3	6	9.0000
UGG	chr15:52202385-52202608(+)$1	223	7	10	9.0000
UGG	chr20:35220768-35221056(+)$1	288	16	19	9.0000
UGG	chr16:4307682-4308023(-)$1	341	2	5	9.0000
ugg	chr7:44873277-44873515(-)$1	238	89	92	9.0000
UGG	chr22:20109959-20110186(+)$1	227	26	29	9.0000
UGG	chr6:160100829-160101068(-)$1	239	22	25	9.0000
UGG	chr17:55760437-55760673(+)$1	236	58	61	9.0000
UGG	chr10:80829524-80829777(+)$1	253	45	48	9.0000
UGG	chr17:47788315-47788543(-)$1	228	1	4	9.0000
UGG	chr4:177251513-177251726(+)$1	213	8	11	9.0000
UGG	chr12:124082132-124082381(+)$1	249	32	35	9.0000
UGG	chr9:136229039-136229275(-)$1	236	85	88	9.0000
UGG	chr5:137685015-137685302(+)$1	287	19	22	9.0000
UGG	chr12:133103851-133104128(+)$1	277	2	5	9.0000
UGG	chr11:62482708-62482948(-)$1	240	63	66	9.0000
UGG	chr18:43564726-43564963(-)$1	237	222	225	9.0000
UGG	chr17:45922623-45922875(-)$1	252	58	61	9.0000

#otherMatches

#Struct PSSM
eee	chr11:63677242-63677477(+)$1	235	19	22	9.0000
MMJ	chr11:838525-838859(+)$1	334	10	13	9.0000
f:b	chr3:194123571-194123819(-)$1	248	61	64	9.0000
dd[	chr11:60658251-60658512(-)$1	261	6	9	9.0000
nnn	chr16:74656117-74656373(-)$1	256	46	49	9.0000
gg[	chr1:151377083-151377324(-)$1	241	7	10	9.0000
iii	chr1:12072162-12072469(+)$1	307	10	13	9.0000
ggg	chr5:32125572-32125829(-)$1	257	47	50	9.0000
ccc	chr12:56365453-56365675(+)$1	222	3	6	9.0000
ddd	chr14:100747340-100747585(+)$1	245	30	33	9.0000
GGG	chr19:5020330-5020711(+)$1	381	13	16	9.0000
hhh	chr19:2270531-2270772(+)$1	241	23	26	9.0000
HHH	chr17:20903598-20903859(-)$1	261	10	13	9.0000
:::	chr17:56168093-56168323(+)$1	230	11	14	9.0000
:::	chr6:86352527-86352824(-)$1	297	0	3	9.0000
:FF	chr14:69365168-69365526(-)$1	358	56	59	9.0000
ggg	chr16:15154615-15154962(-)$1	347	53	56	9.0000
^cc	chr2:28974739-28975006(+)$1	267	52	55	9.0000
eee	chr10:102122362-102122611(+)$1	249	87	90	9.0000
CKK	chr21:46928344-46928616(+)$1	272	2	5	9.0000
BB~	chr2:30866579-30866892(+)$1	313	144	147	9.0000
EEE	chr20:49198380-49198681(+)$1	301	0	3	9.0000
ggg	chr20:1165410-1165701(-)$1	291	64	67	9.0000
ii!	chr16:11981330-11981605(-)$1	275	8	11	9.0000
f!!	chr22:20111988-20112218(+)$1	230	27	30	9.0000
ggg	chr7:135612922-135613144(-)$1	222	8	11	9.0000
DDD	chr12:112943887-112944134(+)$1	247	31	34	9.0000
{FF	chr16:88557075-88557322(+)$1	247	23	26	9.0000
2dd	chr17:47788139-47788399(-)$1	260	37	40	9.0000
EEE	chr17:42283544-42283839(-)$1	295	5	8	9.0000
e]d	chr10:102121435-102121662(+)$1	227	42	45	9.0000
eee	chr3:49396700-49396924(-)$1	224	36	39	9.0000
WWW	chr17:73314647-73314902(-)$1	255	27	30	9.0000
:::	chr15:89174810-89175101(+)$1	291	20	23	9.0000
eee	chr12:56387364-56387622(+)$1	258	142	145	9.0000
44c	chr17:56167547-56167771(+)$1	224	74	77	9.0000
CCC	chr1:33240376-33240627(+)$1	251	2	5	9.0000
>>d	chr12:98943438-98943722(+)$1	284	197	200	9.0000
hcc	chr1:166826125-166826397(-)$1	272	38	41	9.0000
ddd	chr8:141531884-141532141(-)$1	257	140	143	9.0000
eee	chr1:15987730-15987997(+)$1	267	191	194	9.0000
B{H	chr1:27928608-27928872(-)$1	264	15	18	9.0000
:::	chr2:97559944-97560159(-)$1	215	4	7	9.0000
eee	chr6:24536885-24537196(+)$1	311	286	289	9.0000
ggg	chr1:162494528-162494746(+)$1	218	78	81	9.0000
TCC	chr1:36385766-36386003(+)$1	237	24	27	9.0000
ffp	chr1:974190-974446(+)$1	256	4	7	9.0000
DDD	chr8:141539124-141539420(-)$1	296	54	57	9.0000
pcc	chr12:49396285-49396614(-)$1	329	65	68	9.0000
eee	chr16:3777252-3777574(-)$1	322	42	45	9.0000
ggg	chr7:44871646-44871912(-)$1	266	122	125	9.0000
eee	chr1:1197701-1197951(-)$1	250	7	10	9.0000
::c	chr11:64846151-64846428(-)$1	277	2	5	9.0000
D::	chr6:42979679-42979934(+)$1	255	29	32	9.0000
JJJ	chr11:777005-777295(-)$1	290	12	15	9.0000
ddd	chr1:44170368-44170640(+)$1	272	37	40	9.0000
#bb	chr1:115314947-115315223(-)$1	276	32	35	9.0000
ggg	chr4:1012625-1012878(+)$1	253	19	22	9.0000
ddd	chr19:878832-879110(-)$1	278	19	22	9.0000
HHH	chr5:139039668-139039933(+)$1	265	103	106	9.0000
ggg	chr7:137562932-137563186(-)$1	254	80	83	9.0000
:ee	chr6:160101449-160101692(-)$1	243	2	5	9.0000
B{B	chr22:20110930-20111160(+)$1	230	8	11	9.0000
ddc	chr1:154129036-154129240(-)$1	204	46	49	9.0000
ccc	chr5:137842177-137842485(-)$1	308	93	96	9.0000
::D	chr9:139245287-139245559(+)$1	272	17	20	9.0000
II:	chr10:81114097-81114388(+)$1	291	12	15	9.0000
ggg	chr2:131975705-131975985(+)$1	280	9	12	9.0000
eee	chr14:53238557-53238810(+)$1	253	66	69	9.0000
ggg	chr3:17201885-17202141(-)$1	256	45	48	9.0000
bbn	chr11:111934239-111934489(+)$1	250	11	14	9.0000
##c	chr1:230416082-230416379(+)$1	297	41	44	9.0000
ddd	chrX:150575461-150575693(+)$1	232	7	10	9.0000
EEE	chr17:56167664-56167902(+)$1	238	15	18	9.0000
dd]	chr16:89041427-89041678(-)$1	251	37	40	9.0000
EEE	chr11:59569022-59569268(+)$1	246	31	34	9.0000
DDD	chr1:19542589-19542834(-)$1	245	17	20	9.0000
{DD	chr2:70889613-70889871(-)$1	258	4	7	9.0000
CCC	chr1:6694965-6695228(-)$1	263	9	12	9.0000
mcc	chr7:75957575-75957822(-)$1	247	26	29	9.0000
FFF	chr8:71024750-71024993(-)$1	243	123	126	9.0000
[dd	chr17:38613505-38613871(+)$1	366	2	5	9.0000
fff	chr5:150089412-150089636(-)$1	224	3	6	9.0000
{DD	chr15:52202385-52202608(+)$1	223	7	10	9.0000
[cc	chr20:35220768-35221056(+)$1	288	16	19	9.0000
DDD	chr16:4307682-4308023(-)$1	341	2	5	9.0000
ggg	chr7:44873277-44873515(-)$1	238	89	92	9.0000
###	chr22:20109959-20110186(+)$1	227	26	29	9.0000
qcc	chr6:160100829-160101068(-)$1	239	22	25	9.0000
!cc	chr17:55760437-55760673(+)$1	236	58	61	9.0000
a[a	chr10:80829524-80829777(+)$1	253	45	48	9.0000
B{A	chr17:47788315-47788543(-)$1	228	1	4	9.0000
CC:	chr4:177251513-177251726(+)$1	213	8	11	9.0000
hhh	chr12:124082132-124082381(+)$1	249	32	35	9.0000
++g	chr9:136229039-136229275(-)$1	236	85	88	9.0000
ddd	chr5:137685015-137685302(+)$1	287	19	22	9.0000
:cc	chr12:133103851-133104128(+)$1	277	2	5	9.0000
EEE	chr11:62482708-62482948(-)$1	240	63	66	9.0000
DDD	chr18:43564726-43564963(-)$1	237	222	225	9.0000
na]	chr17:45922623-45922875(-)$1	252	58	61	9.0000

#DB
)))	chr11:63677242-63677477(+)$1	1	19	22	9.0000
..(	chr11:838525-838859(+)$1	1	10	13	9.0000
).(	chr3:194123571-194123819(-)$1	1	61	64	9.0000
((.	chr11:60658251-60658512(-)$1	1	6	9	9.0000
...	chr16:74656117-74656373(-)$1	1	46	49	9.0000
((.	chr1:151377083-151377324(-)$1	1	7	10	9.0000
(((	chr1:12072162-12072469(+)$1	1	10	13	9.0000
(((	chr5:32125572-32125829(-)$1	1	47	50	9.0000
(((	chr12:56365453-56365675(+)$1	1	3	6	9.0000
(((	chr14:100747340-100747585(+)$1	1	30	33	9.0000
(((	chr19:5020330-5020711(+)$1	1	13	16	9.0000
(((	chr19:2270531-2270772(+)$1	1	23	26	9.0000
(((	chr17:20903598-20903859(-)$1	1	10	13	9.0000
...	chr17:56168093-56168323(+)$1	1	11	14	9.0000
...	chr6:86352527-86352824(-)$1	1	0	3	9.0000
.((	chr14:69365168-69365526(-)$1	1	56	59	9.0000
(((	chr16:15154615-15154962(-)$1	1	53	56	9.0000
.))	chr2:28974739-28975006(+)$1	1	52	55	9.0000
(((	chr10:102122362-102122611(+)$1	1	87	90	9.0000
(..	chr21:46928344-46928616(+)$1	1	2	5	9.0000
)).	chr2:30866579-30866892(+)$1	1	144	147	9.0000
(((	chr20:49198380-49198681(+)$1	1	0	3	9.0000
)))	chr20:1165410-1165701(-)$1	1	64	67	9.0000
((.	chr16:11981330-11981605(-)$1	1	8	11	9.0000
(..	chr22:20111988-20112218(+)$1	1	27	30	9.0000
(((	chr7:135612922-135613144(-)$1	1	8	11	9.0000
(((	chr12:112943887-112944134(+)$1	1	31	34	9.0000
.((	chr16:88557075-88557322(+)$1	1	23	26	9.0000
.))	chr17:47788139-47788399(-)$1	1	37	40	9.0000
(((	chr17:42283544-42283839(-)$1	1	5	8	9.0000
).)	chr10:102121435-102121662(+)$1	1	42	45	9.0000
)))	chr3:49396700-49396924(-)$1	1	36	39	9.0000
...	chr17:73314647-73314902(-)$1	1	27	30	9.0000
...	chr15:89174810-89175101(+)$1	1	20	23	9.0000
(((	chr12:56387364-56387622(+)$1	1	142	145	9.0000
..)	chr17:56167547-56167771(+)$1	1	74	77	9.0000
(((	chr1:33240376-33240627(+)$1	1	2	5	9.0000
..)	chr12:98943438-98943722(+)$1	1	197	200	9.0000
)))	chr1:166826125-166826397(-)$1	1	38	41	9.0000
(((	chr8:141531884-141532141(-)$1	1	140	143	9.0000
)))	chr1:15987730-15987997(+)$1	1	191	194	9.0000
(.(	chr1:27928608-27928872(-)$1	1	15	18	9.0000
...	chr2:97559944-97560159(-)$1	1	4	7	9.0000
(((	chr6:24536885-24537196(+)$1	1	286	289	9.0000
(((	chr1:162494528-162494746(+)$1	1	78	81	9.0000
.((	chr1:36385766-36386003(+)$1	1	24	27	9.0000
((.	chr1:974190-974446(+)$1	1	4	7	9.0000
(((	chr8:141539124-141539420(-)$1	1	54	57	9.0000
.))	chr12:49396285-49396614(-)$1	1	65	68	9.0000
)))	chr16:3777252-3777574(-)$1	1	42	45	9.0000
(((	chr7:44871646-44871912(-)$1	1	122	125	9.0000
(((	chr1:1197701-1197951(-)$1	1	7	10	9.0000
..(	chr11:64846151-64846428(-)$1	1	2	5	9.0000
(..	chr6:42979679-42979934(+)$1	1	29	32	9.0000
(((	chr11:777005-777295(-)$1	1	12	15	9.0000
)))	chr1:44170368-44170640(+)$1	1	37	40	9.0000
.((	chr1:115314947-115315223(-)$1	1	32	35	9.0000
(((	chr4:1012625-1012878(+)$1	1	19	22	9.0000
)))	chr19:878832-879110(-)$1	1	19	22	9.0000
)))	chr5:139039668-139039933(+)$1	1	103	106	9.0000
)))	chr7:137562932-137563186(-)$1	1	80	83	9.0000
.((	chr6:160101449-160101692(-)$1	1	2	5	9.0000
(.(	chr22:20110930-20111160(+)$1	1	8	11	9.0000
(((	chr1:154129036-154129240(-)$1	1	46	49	9.0000
(((	chr5:137842177-137842485(-)$1	1	93	96	9.0000
..(	chr9:139245287-139245559(+)$1	1	17	20	9.0000
((.	chr10:81114097-81114388(+)$1	1	12	15	9.0000
(((	chr2:131975705-131975985(+)$1	1	9	12	9.0000
(((	chr14:53238557-53238810(+)$1	1	66	69	9.0000
(((	chr3:17201885-17202141(-)$1	1	45	48	9.0000
((.	chr11:111934239-111934489(+)$1	1	11	14	9.0000
..(	chr1:230416082-230416379(+)$1	1	41	44	9.0000
(((	chrX:150575461-150575693(+)$1	1	7	10	9.0000
(((	chr17:56167664-56167902(+)$1	1	15	18	9.0000
)).	chr16:89041427-89041678(-)$1	1	37	40	9.0000
(((	chr11:59569022-59569268(+)$1	1	31	34	9.0000
(((	chr1:19542589-19542834(-)$1	1	17	20	9.0000
.((	chr2:70889613-70889871(-)$1	1	4	7	9.0000
(((	chr1:6694965-6695228(-)$1	1	9	12	9.0000
.))	chr7:75957575-75957822(-)$1	1	26	29	9.0000
)))	chr8:71024750-71024993(-)$1	1	123	126	9.0000
.((	chr17:38613505-38613871(+)$1	1	2	5	9.0000
(((	chr5:150089412-150089636(-)$1	1	3	6	9.0000
.((	chr15:52202385-52202608(+)$1	1	7	10	9.0000
.((	chr20:35220768-35221056(+)$1	1	16	19	9.0000
(((	chr16:4307682-4308023(-)$1	1	2	5	9.0000
)))	chr7:44873277-44873515(-)$1	1	89	92	9.0000
...	chr22:20109959-20110186(+)$1	1	26	29	9.0000
.))	chr6:160100829-160101068(-)$1	1	22	25	9.0000
.((	chr17:55760437-55760673(+)$1	1	58	61	9.0000
(.(	chr10:80829524-80829777(+)$1	1	45	48	9.0000
(.(	chr17:47788315-47788543(-)$1	1	1	4	9.0000
((.	chr4:177251513-177251726(+)$1	1	8	11	9.0000
(((	chr12:124082132-124082381(+)$1	1	32	35	9.0000
..(	chr9:136229039-136229275(-)$1	1	85	88	9.0000
(((	chr5:137685015-137685302(+)$1	1	19	22	9.0000
.((	chr12:133103851-133104128(+)$1	1	2	5	9.0000
(((	chr11:62482708-62482948(-)$1	1	63	66	9.0000
)))	chr18:43564726-43564963(-)$1	1	222	225	9.0000
.).	chr17:45922623-45922875(-)$1	1	58	61	9.0000

#PSSM
U : 0.88	u : 0.11	
G : 0.88	g : 0.11	
G : 0.89	g : 0.10	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_CDS_m2_run1.nuc.txt

#NT
UGAAGAA	chr8:48772094-48772297(-)$1	203	168	175	13.6984
UGAAGAA	chr17:57758280-57758501(+)$1	221	27	34	13.6984
UGUAGAG	chrX:53655377-53655601(-)$1	224	213	220	12.3492
UGAAGAA	chr17:57758301-57758517(+)$1	216	6	13	13.6984
UGAAGAA	chr21:38538014-38538355(+)$1	341	13	20	13.6984
UGAAGAA	chr17:57741133-57741396(+)$1	263	80	87	13.6984
UGAAGAA	chr7:72903424-72903667(-)$1	243	88	95	13.6984
UGAGGAG	chr17:26961742-26961968(-)$1	226	156	163	12.5079
UGAGGAG	chr17:57754354-57754618(+)$1	264	8	15	12.5079
UGAAGAA	chr17:38547737-38547978(-)$1	241	200	207	13.6984
UGAAGAG	chr1:19510204-19510441(-)$1	237	61	68	16.3968
AGAAGAG	chr8:48751639-48751866(-)$1	227	13	20	11.9523
UGAAGAU	chr12:968440-968731(+)$1	291	87	94	13.3809
CGAAGAG	chrX:53240579-53240881(-)$1	302	193	200	11.8730
UGAAGAG	chr10:129904191-129904469(-)$1	278	101	108	16.3968
UGAAGAU	chr1:19441855-19442114(-)$1	259	39	46	13.3809
UGAAAAG	chr2:96952693-96952956(-)$1	263	206	213	11.8730
UGAGGAG	chr17:57754294-57754528(+)$1	234	68	75	12.5079
UGAAGAU	chr8:48719598-48719815(-)$1	217	89	96	13.3809
UGAAGAG	chrX:153586714-153586934(-)$1	220	104	111	16.3968
UGCAGAG	chr7:2403978-2404264(+)$1	286	23	30	12.4285
UUAAGAG	chr1:19436778-19437027(-)$1	249	8	15	12.0317
UGACGAG	chr7:2402604-2402862(+)$1	258	115	122	12.2698
UGAGGAG	chr16:30081076-30081307(+)$1	231	102	109	12.5079
UGAAGAU	chr11:62295153-62295401(-)$1	248	234	241	13.3809
UGAAUAG	chr1:154573537-154573862(-)$1	325	132	139	11.7936
UGAAGAA	chr2:183866753-183867002(-)$1	249	85	92	13.6984
UCAAGAG	chr8:48733275-48733518(-)$1	243	151	158	12.1111
UGAAGAA	chr16:2814241-2814519(+)$1	278	22	29	13.6984
UGAAGGG	chr9:35711184-35711426(-)$1	242	69	76	12.1111
GGAAGAG	chr21:47678779-47679104(-)$1	325	292	299	11.9523
UGAUGAG	chr5:118485828-118486118(+)$1	290	22	29	12.2698
UAAAGAG	chr1:19431023-19431257(-)$1	234	180	187	12.2698
UGAACAG	chrX:153581840-153582064(-)$1	224	99	106	11.7936
UGCAGAG	chr17:45734128-45734382(+)$1	254	168	175	12.4285
UGAGGAG	chr2:96957424-96957664(-)$1	240	177	184	12.5079
UAAAGAG	chr7:72879714-72879963(-)$1	249	174	181	12.2698
UGCAGAG	chr3:193333361-193333636(+)$1	275	63	70	12.4285
UGAUGAG	chrX:153593404-153593668(-)$1	264	238	245	12.2698
UGAAGAG	chr6:31595823-31596065(+)$1	242	65	72	16.3968
UGAAGAC	chr2:48032672-48032939(+)$1	267	196	203	13.1428
UGAAGAC	chr8:48739284-48739522(-)$1	238	42	49	13.1428
UGAAGAU	chr11:62297141-62297394(-)$1	253	28	35	13.3809
GGAAGAG	chr14:102460465-102460745(+)$1	280	81	88	11.9523
UGAAGAA	chr1:220151886-220152155(-)$1	269	132	139	13.6984
UCAAGAG	chr17:57754245-57754461(+)$1	216	8	15	12.1111
UGAAAAG	chr1:19441211-19441538(-)$1	327	110	117	11.8730
UGGAGAG	chr15:63972718-63972995(-)$1	277	253	260	12.2698
UGAAGUG	chr8:103291175-103291429(-)$1	254	111	118	11.8730
UGAAGGG	chr11:62297627-62297903(-)$1	276	24	31	12.1111
UGGAGAG	chr1:19441829-19442055(-)$1	226	131	138	12.2698
UGACGAG	chr19:41807339-41807671(+)$1	332	184	191	12.2698
UAAAGAG	chr14:102550153-102550407(-)$1	254	229	236	12.2698
UGCAGAG	chr8:48848298-48848552(-)$1	254	185	192	12.4285
UAAAGAG	chr16:8998978-8999283(-)$1	305	133	140	12.2698
UGUAGAG	chr2:61720022-61720289(-)$1	267	151	158	12.3492
AGAAGAG	chrX:153577742-153577980(-)$1	238	215	222	11.9523
UGAAGGG	chr2:114697493-114697753(+)$1	260	44	51	12.1111
UGAAGAG	chrX:53610570-53610816(-)$1	246	171	178	16.3968
UGAAGGG	chr11:62293608-62293840(-)$1	232	113	120	12.1111
UGAAGAC	chr7:72856663-72856948(-)$1	285	259	266	13.1428
UGAAGAU	chr6:168311936-168312214(+)$1	278	28	35	13.3809

#otherMatches

#Struct PSSM
2dddd]b	chrX:53573640-53573884(-)$1	244	213	220	12.3492
ffff:::	chr8:48772094-48772297(-)$1	203	168	175	13.6984
ddd4444	chr17:57758280-57758501(+)$1	221	27	34	13.6984
DDYYDDD	chrX:53655377-53655601(-)$1	224	213	220	12.3492
bnnnnnb	chr17:57758301-57758517(+)$1	216	6	13	13.6984
boooooo	chr21:38538014-38538355(+)$1	341	13	20	13.6984
ccccc[=	chr17:57741133-57741396(+)$1	263	80	87	13.6984
fff[a""	chr7:72903424-72903667(-)$1	243	88	95	13.6984
:ffffff	chr17:26961742-26961968(-)$1	226	156	163	12.5079
ffff[bb	chr17:57754354-57754618(+)$1	264	8	15	12.5079
]bb]hhh	chr17:38547737-38547978(-)$1	241	200	207	13.6984
HHHH{DD	chr1:19510204-19510441(-)$1	237	61	68	16.3968
ffffff[	chr8:48751639-48751866(-)$1	227	13	20	11.9523
e&&&&&&	chr12:968440-968731(+)$1	291	87	94	13.3809
/EEEEEY	chrX:53240579-53240881(-)$1	302	193	200	11.8730
ff:::::	chr10:129904191-129904469(-)$1	278	101	108	16.3968
c::::::	chr1:19441855-19442114(-)$1	259	39	46	13.3809
&&&dddd	chr2:96952693-96952956(-)$1	263	206	213	11.8730
4ffffff	chr17:57754294-57754528(+)$1	234	68	75	12.5079
cc::bb[	chr8:48719598-48719815(-)$1	217	89	96	13.3809
ff:::::	chrX:153586714-153586934(-)$1	220	104	111	16.3968
GDDDD::	chr7:2403978-2404264(+)$1	286	23	30	12.4285
::::::F	chr1:19436778-19437027(-)$1	249	8	15	12.0317
ffff22e	chr7:2402604-2402862(+)$1	258	115	122	12.2698
{GGGGGG	chr16:30081076-30081307(+)$1	231	102	109	12.5079
e55555e	chr11:62295153-62295401(-)$1	248	234	241	13.3809
nnnnnbb	chr1:154573537-154573862(-)$1	325	132	139	11.7936
vvvvvvv	chr2:183866753-183867002(-)$1	249	85	92	13.6984
bbb22dd	chr8:48733275-48733518(-)$1	243	151	158	12.1111
gggggg#	chr16:2814241-2814519(+)$1	278	22	29	13.6984
gg:gggg	chr9:35711184-35711426(-)$1	242	69	76	12.1111
:::::::	chr21:47678779-47679104(-)$1	325	292	299	11.9523
:::dddd	chr5:118485828-118486118(+)$1	290	22	29	12.2698
eqqqqqq	chr1:19431023-19431257(-)$1	234	180	187	12.2698
wccc22b	chrX:153581840-153582064(-)$1	224	99	106	11.7936
eebb!!a	chr17:45734128-45734382(+)$1	254	168	175	12.4285
cdddd!!	chr2:96957424-96957664(-)$1	240	177	184	12.5079
gg:gggg	chr7:72879714-72879963(-)$1	249	174	181	12.2698
ff:dddd	chr3:193333361-193333636(+)$1	275	63	70	12.4285
eee]bb]	chrX:153593404-153593668(-)$1	264	238	245	12.2698
ccooooo	chr6:31595823-31596065(+)$1	242	65	72	16.3968
odddd:E	chr2:48032672-48032939(+)$1	267	196	203	13.1428
888hhhh	chr8:48739284-48739522(-)$1	238	42	49	13.1428
eeee!!b	chr11:62297141-62297394(-)$1	253	28	35	13.3809
dddd$$$	chr14:102460465-102460745(+)$1	280	81	88	11.9523
gggg555	chr1:220151886-220152155(-)$1	269	132	139	13.6984
EEEBBa[	chr17:57754245-57754461(+)$1	216	8	15	12.1111
ccc333e	chr1:19441211-19441538(-)$1	327	110	117	11.8730
cccEEEE	chr15:63972718-63972995(-)$1	277	253	260	12.2698
BDDDD{D	chr8:103291175-103291429(-)$1	254	111	118	11.8730
:::eeee	chr11:62297627-62297903(-)$1	276	24	31	12.1111
HHHHH:J	chr1:19441829-19442055(-)$1	226	131	138	12.2698
cc22ddd	chr19:41807339-41807671(+)$1	332	184	191	12.2698
FFFFFF}	chr14:102550153-102550407(-)$1	254	229	236	12.2698
ddd"""d	chr8:48848298-48848552(-)$1	254	185	192	12.4285
b((((((	chr16:8998978-8999283(-)$1	305	133	140	12.2698
f::::::	chr2:61720022-61720289(-)$1	267	151	158	12.3492
:ddddnn	chrX:153577742-153577980(-)$1	238	215	222	11.9523
obbdddd	chr2:114697493-114697753(+)$1	260	44	51	12.1111
::::ddd	chrX:53610570-53610816(-)$1	246	171	178	16.3968
qqqqddd	chr11:62293608-62293840(-)$1	232	113	120	12.1111
gggg]bb	chr7:72856663-72856948(-)$1	285	259	266	13.1428
DD:dddd	chr6:168311936-168312214(+)$1	278	28	35	13.3809

#DB
.)))).)	chrX:53573640-53573884(-)$1	1	213	220	12.3492
))))...	chr8:48772094-48772297(-)$1	1	168	175	13.6984
)))....	chr17:57758280-57758501(+)$1	1	27	34	13.6984
))..)))	chrX:53655377-53655601(-)$1	1	213	220	12.3492
(.....)	chr17:57758301-57758517(+)$1	1	6	13	13.6984
(......	chr21:38538014-38538355(+)$1	1	13	20	13.6984
(((((.(	chr17:57741133-57741396(+)$1	1	80	87	13.6984
(((.(..	chr7:72903424-72903667(-)$1	1	88	95	13.6984
.((((((	chr17:26961742-26961968(-)$1	1	156	163	12.5079
((((.((	chr17:57754354-57754618(+)$1	1	8	15	12.5079
.)).)))	chr17:38547737-38547978(-)$1	1	200	207	13.6984
((((.((	chr1:19510204-19510441(-)$1	1	61	68	16.3968
((((((.	chr8:48751639-48751866(-)$1	1	13	20	11.9523
(......	chr12:968440-968731(+)$1	1	87	94	13.3809
.))))).	chrX:53240579-53240881(-)$1	1	193	200	11.8730
)).....	chr10:129904191-129904469(-)$1	1	101	108	16.3968
)......	chr1:19441855-19442114(-)$1	1	39	46	13.3809
...((((	chr2:96952693-96952956(-)$1	1	206	213	11.8730
.))))))	chr17:57754294-57754528(+)$1	1	68	75	12.5079
))..((.	chr8:48719598-48719815(-)$1	1	89	96	13.3809
)).....	chrX:153586714-153586934(-)$1	1	104	111	16.3968
(((((..	chr7:2403978-2404264(+)$1	1	23	30	12.4285
......(	chr1:19436778-19437027(-)$1	1	8	15	12.0317
))))..)	chr7:2402604-2402862(+)$1	1	115	122	12.2698
.((((((	chr16:30081076-30081307(+)$1	1	102	109	12.5079
).....)	chr11:62295153-62295401(-)$1	1	234	241	13.3809
.....))	chr1:154573537-154573862(-)$1	1	132	139	11.7936
.......	chr2:183866753-183867002(-)$1	1	85	92	13.6984
)))..))	chr8:48733275-48733518(-)$1	1	151	158	12.1111
((((((.	chr16:2814241-2814519(+)$1	1	22	29	13.6984
)).((((	chr9:35711184-35711426(-)$1	1	69	76	12.1111
.......	chr21:47678779-47679104(-)$1	1	292	299	11.9523
...((((	chr5:118485828-118486118(+)$1	1	22	29	12.2698
(......	chr1:19431023-19431257(-)$1	1	180	187	12.2698
.)))..)	chrX:153581840-153582064(-)$1	1	99	106	11.7936
((((..(	chr17:45734128-45734382(+)$1	1	168	175	12.4285
(((((..	chr2:96957424-96957664(-)$1	1	177	184	12.5079
)).((((	chr7:72879714-72879963(-)$1	1	174	181	12.2698
)).((((	chr3:193333361-193333636(+)$1	1	63	70	12.4285
))).)).	chrX:153593404-153593668(-)$1	1	238	245	12.2698
((.....	chr6:31595823-31596065(+)$1	1	65	72	16.3968
.)))).)	chr2:48032672-48032939(+)$1	1	196	203	13.1428
...))))	chr8:48739284-48739522(-)$1	1	42	49	13.1428
((((..(	chr11:62297141-62297394(-)$1	1	28	35	13.3809
((((...	chr14:102460465-102460745(+)$1	1	81	88	11.9523
))))...	chr1:220151886-220152155(-)$1	1	132	139	13.6984
((((((.	chr17:57754245-57754461(+)$1	1	8	15	12.1111
)))...)	chr1:19441211-19441538(-)$1	1	110	117	11.8730
)))))))	chr15:63972718-63972995(-)$1	1	253	260	12.2698
(((((.(	chr8:103291175-103291429(-)$1	1	111	118	11.8730
...((((	chr11:62297627-62297903(-)$1	1	24	31	12.1111
))))).(	chr1:19441829-19442055(-)$1	1	131	138	12.2698
))..)))	chr19:41807339-41807671(+)$1	1	184	191	12.2698
)))))).	chr14:102550153-102550407(-)$1	1	229	236	12.2698
(((...(	chr8:48848298-48848552(-)$1	1	185	192	12.4285
(......	chr16:8998978-8999283(-)$1	1	133	140	12.2698
)......	chr2:61720022-61720289(-)$1	1	151	158	12.3492
.((((..	chrX:153577742-153577980(-)$1	1	215	222	11.9523
.))))))	chr2:114697493-114697753(+)$1	1	44	51	12.1111
....(((	chrX:53610570-53610816(-)$1	1	171	178	16.3968
....)))	chr11:62293608-62293840(-)$1	1	113	120	12.1111
)))).))	chr7:72856663-72856948(-)$1	1	259	266	13.1428
((.((((	chr6:168311936-168312214(+)$1	1	28	35	13.3809

#PSSM
U : 0.92	A : 0.03	G : 0.03	C : 0.01	
G : 0.88	A : 0.06	C : 0.03	U : 0.01	
A : 0.85	C : 0.06	U : 0.04	G : 0.03	
A : 0.85	G : 0.07	C : 0.03	U : 0.03	
G : 0.93	A : 0.03	U : 0.01	C : 0.01	
A : 0.92	G : 0.06	U : 0.01	
G : 0.69	A : 0.15	U : 0.09	C : 0.04	

#score	814.2698412698401
#seq	63
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_UTR_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
+eeeee[a"""cccmmmmccc55555a]eeeee0000000000dddd333dddd:::::BB{FFFFFFCCC::::dddduuuuuuuuuuuudddd::::cccqqqqqqqqccc:ddddoooooodddd::::::::::::eeeeemmmmeeeee:CCCYYFFFFFFBB~~~~A}EEEEEYYGGGGGGGEEEEEiiiiiiiii"""ddddmmmmdddd22iiiiiiiii:::::hhhhhhhhccccccuuuuuuuuuuuuccc]ccc]hhhhh	chr2:190339931-190340257(+)$1	326	50	322	816.0000

#DB
.(((((.(...(((....))).....).)))))..........))))...)))).....((.(((((((((....((((............))))....(((........))).((((......))))............(((((....))))).)))..))))))))....).)))))..))))))))))))(((((((((...((((....))))..))))))))).....((((((((((((((............))).))).)))))	chr2:190339931-190340257(+)$1	1	50	322	816.0000

#PSSM
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	

#score	816.0
#seq	1
#width	272
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_UTR_m1_run1.nuc.txt

#NT
UUGACUUUCUU	chr14:69584862-69585115(-)$1	253	8	19	16.6607
UUGUUUUUUCU	chr6:8090371-8090617(-)$1	246	83	94	18.3571
UUAUUUUUCCU	chr2:11323417-11323720(-)$1	303	133	144	18.7142
UCCUUUUUCUU	chr6:126332280-126332545(+)$1	265	98	109	17.5535
UUUUUUUUUUU	chr11:89946462-89946701(-)$1	239	182	193	19.8750
AUAUUUUUCUU	chr16:69718838-69719109(+)$1	271	210	221	18.0892
UUUUCUUUCUU	chr12:32871446-32871715(+)$1	269	86	97	18.7142
UUGUCUUUCCU	chr19:54973021-54973265(+)$1	244	191	202	17.1964
UAAUUUUUCUU	chr11:33182744-33183027(-)$1	283	95	106	18.0892
GUGUUUUUCUG	chr10:70520636-70520890(+)$1	254	102	113	16.3035
UGAUUUUUCUU	chr8:22269261-22269516(+)$1	255	130	141	18.0892
UUUUUUCUCUU	chr15:65297129-65297391(-)$1	262	77	88	18.0892
uuuuguuucuu	chr17:44143951-44144243(-)$1	292	96	107	18.3571
UUGUUUUUCUU	chr8:9634044-9634288(+)$1	244	90	101	24.4285
GUGUCUUUCUU	chr6:111590128-111590418(+)$1	290	139	150	16.8392
AUGUUGUUCUU	chr2:223507604-223507842(-)$1	238	179	190	15.7678
uuuuuuuucuu	chr21:34900749-34901020(-)$1	271	88	99	22.4642
UUGUUUUUUUC	chr5:172565680-172566002(+)$1	322	29	40	17.9107
UUAUUUUUCCU	chr2:202005978-202006251(+)$1	273	18	29	18.7142
UUUAUUUUCUU	chr1:110564278-110564520(+)$1	242	92	103	18.4464
UGGUUUUUUUU	chr18:33605576-33605839(-)$1	263	8	19	17.7321
UUGUUUGUUUU	chr3:9514807-9515053(+)$1	246	90	101	17.2857
UUGAAUUUCUU	chr9:136230634-136230898(-)$1	264	234	245	16.4821
UUGUUAUUCUA	chr4:186267574-186267824(+)$1	250	43	54	15.5000
UUAUUUUUCUC	chr7:11142871-11143127(+)$1	256	92	103	18.2678
GUGUUUUUCUC	chr8:30435999-30436258(-)$1	259	80	91	16.6607
UAGUUUUUGUU	chr1:97278461-97278750(+)$1	289	251	262	17.0178
UUGUUUUUCUU	chr15:85307818-85308121(+)$1	303	98	109	24.4285
UUGAUGUUCUU	chr12:132199040-132199304(+)$1	264	30	41	15.8571
UUGUUUUUUCU	chr11:102219225-102219502(+)$1	277	86	97	18.3571
UUGUUUUUCUU	chr3:126158432-126158683(-)$1	251	230	241	24.4285
UUGUUUUUGUU	chr4:83345895-83346134(-)$1	239	82	93	21.1250
CUGAUUUUCUU	chr12:112480866-112481128(-)$1	262	45	56	16.2142
UUGUUUUGCUU	chr9:34017034-34017315(-)$1	281	96	107	19.8750
UUGUUUUGUUU	chr1:46124669-46124925(-)$1	256	96	107	17.2857
UUUUAUUUCUU	chr5:174938282-174938596(+)$1	314	91	102	18.5357
UUCUUUUCCUU	chr14:20781811-20782072(-)$1	261	26	37	17.1964
uuuuuuuucuu	chr11:134128271-134128530(+)$1	259	77	88	22.4642
GUGUUUUUCAU	chr12:72004409-72004640(-)$1	231	52	63	16.7500
UUGUUUCUCAU	chr1:151861707-151861982(-)$1	275	97	108	16.2142
UUAUUUUUUUU	chr8:54905919-54906168(-)$1	249	91	102	19.6071
UAGUUUUUCUC	chr10:121336157-121336375(-)$1	218	26	37	16.3928
UUGUUUUUUUU	chr10:120450725-120450972(-)$1	247	201	212	21.8392
UGGUUUUUCUU	chr1:70696657-70696886(+)$1	229	88	99	20.3214
UUCCUUUUCUU	chr6:150048141-150048447(-)$1	306	90	101	17.4642
UUGUUUUUCCC	chr7:26230655-26230871(-)$1	216	25	36	17.0178
UUGUUUUUUAU	chr17:45219232-45219523(-)$1	291	16	27	18.0000
UUGUUUUUGUU	chr5:72204423-72204695(+)$1	272	88	99	21.1250
UUCUUUUUCUU	chr5:115248938-115249200(+)$1	262	89	100	21.8392
UUUUUUUUUUU	chr13:45973051-45973335(-)$1	284	90	101	19.8750
UUGUCUUUAUU	chr1:76255526-76255774(+)$1	248	95	106	17.2857
UUAUAUUUCUU	chr20:30959855-30960109(+)$1	254	84	95	18.2678
UUGUUUUUCCU	chr12:32859492-32859765(+)$1	273	88	99	20.9464
UUUUUUUUCUU	chr2:69553201-69553477(-)$1	276	94	105	22.4642
UUUUUUCUCUU	chr9:114135549-114135795(-)$1	246	86	97	18.0892

#otherMatches

#Struct PSSM
GGYYBB:::::	chr14:32315561-32315814(+)$1	253	100	111	17.1964
DD{BB::::ee	chr14:69584862-69585115(-)$1	253	8	19	16.6607
::::::::ddd	chr6:8090371-8090617(-)$1	246	83	94	18.3571
}CCC///////	chr2:11323417-11323720(-)$1	303	133	144	18.7142
eeee"""gggg	chr6:126332280-126332545(+)$1	265	98	109	17.5535
miiiiiiiii3	chr11:89946462-89946701(-)$1	239	182	193	19.8750
c::::::GGGG	chr16:69718838-69719109(+)$1	271	210	221	18.0892
hhhh::::BB{	chr12:32871446-32871715(+)$1	269	86	97	18.7142
dd]eeeeebbn	chr19:54973021-54973265(+)$1	244	191	202	17.1964
^^^^^^^^^^^	chr11:33182744-33183027(-)$1	283	95	106	18.0892
KJJJJJJJJJJ	chr10:70520636-70520890(+)$1	254	102	113	16.3035
ffffhhhhhhh	chr8:22269261-22269516(+)$1	255	130	141	18.0892
333dddd4444	chr15:65297129-65297391(-)$1	262	77	88	18.0892
^^^^^^^^^^^	chr17:44143951-44144243(-)$1	292	96	107	18.3571
ttttttttttb	chr8:9634044-9634288(+)$1	244	90	101	24.4285
eeebboooooo	chr6:111590128-111590418(+)$1	290	139	150	16.8392
bb]========	chr2:223507604-223507842(-)$1	238	179	190	15.7678
^^^^^^^^^^^	chr21:34900749-34901020(-)$1	271	88	99	22.4642
::eeeeemmmm	chr5:172565680-172566002(+)$1	322	29	40	17.9107
KKEEEEE::::	chr2:202005978-202006251(+)$1	273	18	29	18.7142
xxxxxxxxxxe	chr1:110564278-110564520(+)$1	242	92	103	18.4464
FFFFffffffm	chr18:33605576-33605839(-)$1	263	8	19	17.7321
=!!iiiiiiii	chr3:9514807-9515053(+)$1	246	90	101	17.2857
:ddddssssss	chr9:136230634-136230898(-)$1	264	234	245	16.4821
cceeeee####	chr4:186267574-186267824(+)$1	250	43	54	15.5000
^^^^^^^^^^^	chr7:11142871-11143127(+)$1	256	92	103	18.2678
===========	chr8:30435999-30436258(-)$1	259	80	91	16.6607
]ccc22eeeee	chr1:97278461-97278750(+)$1	289	251	262	17.0178
xxxxxxxxxxx	chr15:85307818-85308121(+)$1	303	98	109	24.4285
::ddddmmmmd	chr12:132199040-132199304(+)$1	264	30	41	15.8571
{FFFFFF:::g	chr11:102219225-102219502(+)$1	277	86	97	18.3571
::eeeeepppp	chr3:126158432-126158683(-)$1	251	230	241	24.4285
:::::::::::	chr4:83345895-83346134(-)$1	239	82	93	21.1250
eee::::::::	chr12:112480866-112481128(-)$1	262	45	56	16.2142
GGGG{EEEEEM	chr9:34017034-34017315(-)$1	281	96	107	19.8750
ssssssssssh	chr1:46124669-46124925(-)$1	256	96	107	17.2857
b]ggggggg22	chr5:174938282-174938596(+)$1	314	91	102	18.5357
HHHHHHEEEEE	chr14:20781811-20782072(-)$1	261	26	37	17.1964
:::::::::::	chr11:134128271-134128530(+)$1	259	77	88	22.4642
ddd333eeeee	chr12:72004409-72004640(-)$1	231	52	63	16.7500
EEESSSSSSSS	chr1:151861707-151861982(-)$1	275	97	108	16.2142
hhhhhh!!eee	chr8:54905919-54906168(-)$1	249	91	102	19.6071
+++++++++++	chr10:121336157-121336375(-)$1	218	26	37	16.3928
GGGG:::::::	chr10:120450725-120450972(-)$1	247	201	212	21.8392
gggggeeeee:	chr1:70696657-70696886(+)$1	229	88	99	20.3214
========vvv	chr6:150048141-150048447(-)$1	306	90	101	17.4642
DD:::::::::	chr7:26230655-26230871(-)$1	216	25	36	17.0178
dd!!aoooooo	chr17:45219232-45219523(-)$1	291	16	27	18.0000
mmmmggggggg	chr5:72204423-72204695(+)$1	272	88	99	21.1250
HH::::ccc$$	chr5:115248938-115249200(+)$1	262	89	100	21.8392
ggggg!!ccc"	chr13:45973051-45973335(-)$1	284	90	101	19.8750
#hhhhhhhh!!	chr1:76255526-76255774(+)$1	248	95	106	17.2857
oooooocccee	chr20:30959855-30960109(+)$1	254	84	95	18.2678
===========	chr12:32859492-32859765(+)$1	273	88	99	20.9464
^^^^^^^^^^^	chr2:69553201-69553477(-)$1	276	94	105	22.4642
yyyyyyyyyyy	chr9:114135549-114135795(-)$1	246	86	97	18.0892

#DB
))..)).....	chr14:32315561-32315814(+)$1	1	100	111	17.1964
((.((....((	chr14:69584862-69585115(-)$1	1	8	19	16.6607
........(((	chr6:8090371-8090617(-)$1	1	83	94	18.3571
.))).......	chr2:11323417-11323720(-)$1	1	133	144	18.7142
((((...((((	chr6:126332280-126332545(+)$1	1	98	109	17.5535
.))))))))).	chr11:89946462-89946701(-)$1	1	182	193	19.8750
)......))))	chr16:69718838-69719109(+)$1	1	210	221	18.0892
))))....((.	chr12:32871446-32871715(+)$1	1	86	97	18.7142
)).)))))((.	chr19:54973021-54973265(+)$1	1	191	202	17.1964
...........	chr11:33182744-33183027(-)$1	1	95	106	18.0892
.((((((((((	chr10:70520636-70520890(+)$1	1	102	113	16.3035
)))))))))))	chr8:22269261-22269516(+)$1	1	130	141	18.0892
...))))....	chr15:65297129-65297391(-)$1	1	77	88	18.0892
...........	chr17:44143951-44144243(-)$1	1	96	107	18.3571
..........)	chr8:9634044-9634288(+)$1	1	90	101	24.4285
(((((......	chr6:111590128-111590418(+)$1	1	139	150	16.8392
)).))))))))	chr2:223507604-223507842(-)$1	1	179	190	15.7678
...........	chr21:34900749-34901020(-)$1	1	88	99	22.4642
..(((((....	chr5:172565680-172566002(+)$1	1	29	40	17.9107
..(((((....	chr2:202005978-202006251(+)$1	1	18	29	18.7142
..........)	chr1:110564278-110564520(+)$1	1	92	103	18.4464
((((((((((.	chr18:33605576-33605839(-)$1	1	8	19	17.7321
(..((((((((	chr3:9514807-9515053(+)$1	1	90	101	17.2857
.((((......	chr9:136230634-136230898(-)$1	1	234	245	16.4821
(((((((....	chr4:186267574-186267824(+)$1	1	43	54	15.5000
...........	chr7:11142871-11143127(+)$1	1	92	103	18.2678
)))))))))))	chr8:30435999-30436258(-)$1	1	80	91	16.6607
.)))..)))))	chr1:97278461-97278750(+)$1	1	251	262	17.0178
...........	chr15:85307818-85308121(+)$1	1	98	109	24.4285
..((((....)	chr12:132199040-132199304(+)$1	1	30	41	15.8571
.((((((...(	chr11:102219225-102219502(+)$1	1	86	97	18.3571
..(((((....	chr3:126158432-126158683(-)$1	1	230	241	24.4285
...........	chr4:83345895-83346134(-)$1	1	82	93	21.1250
)))........	chr12:112480866-112481128(-)$1	1	45	56	16.2142
((((.(((((.	chr9:34017034-34017315(-)$1	1	96	107	19.8750
..........)	chr1:46124669-46124925(-)$1	1	96	107	17.2857
).)))))))..	chr5:174938282-174938596(+)$1	1	91	102	18.5357
(((((((((((	chr14:20781811-20782072(-)$1	1	26	37	17.1964
...........	chr11:134128271-134128530(+)$1	1	77	88	22.4642
)))...)))))	chr12:72004409-72004640(-)$1	1	52	63	16.7500
(((........	chr1:151861707-151861982(-)$1	1	97	108	16.2142
((((((..(((	chr8:54905919-54906168(-)$1	1	91	102	19.6071
...........	chr10:121336157-121336375(-)$1	1	26	37	16.3928
)))).......	chr10:120450725-120450972(-)$1	1	201	212	21.8392
)))))))))).	chr1:70696657-70696886(+)$1	1	88	99	20.3214
((((((((...	chr6:150048141-150048447(-)$1	1	90	101	17.4642
((.........	chr7:26230655-26230871(-)$1	1	25	36	17.0178
((..(......	chr17:45219232-45219523(-)$1	1	16	27	18.0000
....)))))))	chr5:72204423-72204695(+)$1	1	88	99	21.1250
((....(((..	chr5:115248938-115249200(+)$1	1	89	100	21.8392
(((((..(((.	chr13:45973051-45973335(-)$1	1	90	101	19.8750
.((((((((..	chr1:76255526-76255774(+)$1	1	95	106	17.2857
......)))))	chr20:30959855-30960109(+)$1	1	84	95	18.2678
(((((((((((	chr12:32859492-32859765(+)$1	1	88	99	20.9464
...........	chr2:69553201-69553477(-)$1	1	94	105	22.4642
...........	chr9:114135549-114135795(-)$1	1	86	97	18.0892

#PSSM
U : 0.80	G : 0.08	u : 0.05	A : 0.03	C : 0.01	
U : 0.82	A : 0.05	G : 0.05	u : 0.05	C : 0.01	
G : 0.58	A : 0.14	U : 0.14	C : 0.07	u : 0.05	
U : 0.83	A : 0.08	u : 0.05	C : 0.01	
U : 0.80	C : 0.08	A : 0.05	u : 0.03	g : 0.01	
U : 0.89	u : 0.05	G : 0.03	A : 0.01	
U : 0.87	C : 0.05	u : 0.05	G : 0.01	
U : 0.89	u : 0.05	G : 0.03	C : 0.01	
C : 0.66	U : 0.19	c : 0.05	G : 0.05	A : 0.03	
U : 0.76	C : 0.12	u : 0.05	A : 0.05	
U : 0.82	C : 0.08	u : 0.05	G : 0.01	A : 0.01	

#score	1044.0714285714296
#seq	56
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_CDS_m3_run2.nuc.txt

#NT
GGAGCCGGGCGAGCGC	chr5:179248442-179248718(+)$1	276	134	150	13.5208
GGAUCGGGAGGUUGGG	chr19:2270536-2270763(+)$1	227	158	174	17.8958
Cgaggaggagaagagg	chr1:10689823-10690095(+)$1	272	31	47	15.1875
GGUGGAGGAGGAGGGG	chr7:104753062-104753345(-)$1	283	247	263	24.8749
GGAGGAGGAGGAAGCG	chr19:46271999-46272241(-)$1	242	219	235	21.3333
GCAGGGGGAGGUGGGU	chr1:1257263-1257574(-)$1	311	277	293	16.6458
GGCGUGGGAGGGAGGG	chr22:37622721-37623050(-)$1	329	3	19	19.1458
GUCCCGGGGGGAGGGG	chr12:54402913-54403227(+)$1	314	68	84	15.3958
GGAGGAGUCGGAGGUG	chr15:80214928-80215230(-)$1	302	30	46	17.7916
GGAGCCCggagagggg	chr2:54197753-54198047(-)$1	294	56	72	17.0625
ggaggaggaggaggag	chr5:180651108-180651379(+)$1	271	73	89	24.7708
ggcgcgggaggaagcg	chr22:19418893-19419223(-)$1	330	131	147	19.2499
GGAGUUGGGGGGGUGG	chr19:4037223-4037477(+)$1	254	91	107	19.4583
GGGGCGGGGGCUGCGG	chr3:195621999-195622244(-)$1	245	13	29	15.6041
GGAGCGCGUGGCGGGG	chr1:234614171-234614449(-)$1	278	79	95	20.0833
GGCGCAUGAGGGAGGG	chr7:127670080-127670351(+)$1	271	87	103	16.7500
GGAUGGGGAGGCGGGG	chr16:2867269-2867538(+)$1	269	87	103	21.3333
GGAGCUGUCGGGGCGG	chr17:62501773-62502029(-)$1	256	57	73	16.3333
GGAGGAGGGGGAGGAG	chr15:80215309-80215601(-)$1	292	96	112	23.5208
GGCGGCGGCGGCGGCG	chr9:126692083-126692383(-)$1	300	35	51	18.1041
GGAGCAGGAGGAGGGG	chr21:45223339-45223599(+)$1	260	98	114	27.8958
GGGGCCGGCCGUGGGG	chr4:129208779-129209062(-)$1	283	51	67	16.9583
ggggaugggggagggg	chr9:140323142-140323446(+)$1	304	53	69	21.2291
AGAGCAGGUGGGGGAG	chr16:419487-419758(-)$1	271	132	148	17.4791
gggggcagagcagggg	chr19:38876349-38876634(+)$1	285	95	111	15.8125
ggcggagggagagggg	chr8:30669797-30670094(-)$1	297	49	65	19.7708
GGCGCAGGAGGGCGCG	chr19:1104607-1104921(+)$1	314	232	248	17.7916
ggaggaggcgguggag	chr4:39699722-39700080(+)$1	358	135	151	21.5416
GGAGUUGGAGGGGCGG	chr10:101379818-101380101(-)$1	283	11	27	21.1249
GCAGUGGGAGCAGGGG	chr2:132044797-132045056(+)$1	259	32	48	17.6875
ggaggaggaggaggag	chr5:180651179-180651447(+)$1	268	2	18	24.7708
GGACUAGGGGGUGGGG	chr11:58346630-58346893(+)$1	263	93	109	19.2500
AGAGGAGGGGAAGAGG	chr11:65620308-65620570(-)$1	262	231	247	14.0416
GGAGGAGGAGGAGGAG	chr4:48344033-48344321(+)$1	288	91	107	24.7708
GGUGCUGGUGGCAGGG	chr12:112035506-112035828(-)$1	322	156	172	17.4791
GGAGCAGGAGGAGGGG	chr18:51750757-51751054(-)$1	297	160	176	27.8958
GGUGCUGGUGGCAGGG	chr12:112035449-112035706(-)$1	257	34	50	17.4791
GGAgcgggcggcggcg	chr19:10406921-10407208(+)$1	287	251	267	21.6458
GGAGCUGGGGGUGGCG	chr19:2270399-2270619(+)$1	220	115	131	21.5416
GGGGCGGGUGGGGGCG	chr16:90086236-90086521(+)$1	285	69	85	19.3541
GGAGGCAGAGGGGCGG	chr7:1481966-1482222(-)$1	256	21	37	17.7916
GGAGUUGGAGCAGCGG	chr14:103574604-103574878(+)$1	274	69	85	18.4166
GGGGCGGGCGGCGCGG	chr11:65343663-65343902(+)$1	239	6	22	19.0416
ggaggaggaggaggag	chr12:19592503-19592764(+)$1	261	97	113	24.7708
ggcgggcggcgggggg	chr7:77166747-77167015(+)$1	268	68	84	14.2500
GGUGCUGGAGGAGUGG	chr20:62331700-62331959(-)$1	259	201	217	20.9166
GGAGUGGGAGGUUGGG	chr1:155658042-155658334(-)$1	292	131	147	20.7083

#otherMatches

#Struct PSSM
CCCCCC}AYYFFFFFF	chr7:127669392-127669688(+)$1	296	107	123	16.0208
}GGGGGGGCCC}BB}F	chr5:179248442-179248718(+)$1	276	134	150	13.5208
oooooobb]hhhhhhh	chr19:2270536-2270763(+)$1	227	158	174	17.8958
C:::::::::::::::	chr1:10689823-10690095(+)$1	272	31	47	15.1875
eeexxxxxxxxxxxxx	chr7:104753062-104753345(-)$1	283	247	263	24.8749
:::::::::::::DDD	chr19:46271999-46272241(-)$1	242	219	235	21.3333
GGGGGGG~~~~CCCFF	chr1:1257263-1257574(-)$1	311	277	293	16.6458
:GGGGGGGLLLFFFFF	chr22:37622721-37623050(-)$1	329	3	19	19.1458
33ffffffccc22ccc	chr12:54402913-54403227(+)$1	314	68	84	15.3958
]ccc]dddd:iiiiii	chr15:80214928-80215230(-)$1	302	30	46	17.7916
b22dddd7777777a]	chr2:54197753-54198047(-)$1	294	56	72	17.0625
::::::::::::::::	chr5:180651108-180651379(+)$1	271	73	89	24.7708
b]ccc::::ccc[bb[	chr22:19418893-19419223(-)$1	330	131	147	19.2499
gggDDDD{BBDDDD{G	chr19:4037223-4037477(+)$1	254	91	107	19.4583
IIIIIIIIIdddd[a"	chr3:195621999-195622244(-)$1	245	13	29	15.6041
bb22bba]a]ffffff	chr1:234614171-234614449(-)$1	278	79	95	20.0833
dd]bb:HHHHHHHHCC	chr7:127670080-127670351(+)$1	271	87	103	16.7500
sssssssssa]ccc]b	chr16:2867269-2867538(+)$1	269	87	103	21.3333
666hhhhhhhh=====	chr17:62501773-62502029(-)$1	256	57	73	16.3333
::::eeeeeccc"""a	chr15:80215309-80215601(-)$1	292	96	112	23.5208
ccc22eeeeeeeeee#	chr9:126692083-126692383(-)$1	300	35	51	18.1041
HHHHHHHH::::eeee	chr21:45223339-45223599(+)$1	260	98	114	27.8958
ffffffdddddddd]a	chr4:129208779-129209062(-)$1	283	51	67	16.9583
{ALLLFFFFFF{GGGG	chr9:140323142-140323446(+)$1	304	53	69	21.2291
b!!hhhhhhhh!!eee	chr16:419487-419758(-)$1	271	132	148	17.4791
eeDDDDLLLGGGGGGG	chr19:38876349-38876634(+)$1	285	95	111	15.8125
ccc"""ccc[a!!amm	chr8:30669797-30670094(-)$1	297	49	65	19.7708
mdddd22a]dddd444	chr19:1104607-1104921(+)$1	314	232	248	17.7916
rrrrrrffffff::CC	chr4:39699722-39700080(+)$1	358	135	151	21.5416
ooa]dddd::::CCC{	chr10:101379818-101380101(-)$1	283	11	27	21.1249
]dddd]ddddaeeeee	chr2:132044797-132045056(+)$1	259	32	48	17.6875
::::::::::::::::	chr5:180651179-180651447(+)$1	268	2	18	24.7708
mmmmdddd]ccc:ddd	chr11:58346630-58346893(+)$1	263	93	109	19.2500
vvvvvvvvvvvdddd]	chr11:65620308-65620570(-)$1	262	231	247	14.0416
effffff:ffffff[b	chr4:48344033-48344321(+)$1	288	91	107	24.7708
EE::::ddddffffff	chr12:112035506-112035828(-)$1	322	156	172	17.4791
=!!cccxxxxxxxxxx	chr18:51750757-51751054(-)$1	297	160	176	27.8958
JJJJJJJcccffffff	chr12:112035449-112035706(-)$1	257	34	50	17.4791
777dddd]========	chr19:10406921-10407208(+)$1	287	251	267	21.6458
f!!a[a[fffffflll	chr19:2270399-2270619(+)$1	220	115	131	21.5416
FDDDDJJJJJJJJJJD	chr16:90086236-90086521(+)$1	285	69	85	19.3541
"""ccc[a[dddd[ee	chr7:1481966-1482222(-)$1	256	21	37	17.7916
i:CCC{FFFFFFKKGG	chr14:103574604-103574878(+)$1	274	69	85	18.4166
EEEEE{CCC{BB{BB:	chr11:65343663-65343902(+)$1	239	6	22	19.0416
bb[bb[bb!!a[bb[b	chr12:19592503-19592764(+)$1	261	97	113	24.7708
BCCCJJJJJJJJJJJJ	chr7:77166747-77167015(+)$1	268	68	84	14.2500
ppppppbb]ccc]eee	chr20:62331700-62331959(-)$1	259	201	217	20.9166
$$$$$eeeee[=====	chr1:155658042-155658334(-)$1	292	131	147	20.7083

#DB
)))))).)..))))))	chr7:127669392-127669688(+)$1	1	107	123	16.0208
.)))))))))).)).)	chr5:179248442-179248718(+)$1	1	134	150	13.5208
......)).)))))))	chr19:2270536-2270763(+)$1	1	158	174	17.8958
(...............	chr1:10689823-10690095(+)$1	1	31	47	15.1875
(((.............	chr7:104753062-104753345(-)$1	1	247	263	24.8749
.............)))	chr19:46271999-46272241(-)$1	1	219	235	21.3333
)))))))....)))))	chr1:1257263-1257574(-)$1	1	277	293	16.6458
.(((((((...(((((	chr22:37622721-37623050(-)$1	1	3	19	19.1458
..)))))))))..)))	chr12:54402913-54403227(+)$1	1	68	84	15.3958
.))).)))).((((((	chr15:80214928-80215230(-)$1	1	30	46	17.7916
)..)))).......).	chr2:54197753-54198047(-)$1	1	56	72	17.0625
................	chr5:180651108-180651379(+)$1	1	73	89	24.7708
).)))....(((.((.	chr22:19418893-19419223(-)$1	1	131	147	19.2499
)))((((.((((((.(	chr19:4037223-4037477(+)$1	1	91	107	19.4583
(((((((((((((.(.	chr3:195621999-195622244(-)$1	1	13	29	15.6041
))..))).).))))))	chr1:234614171-234614449(-)$1	1	79	95	20.0833
)).)).))))))))((	chr7:127670080-127670351(+)$1	1	87	103	16.7500
.........).))).)	chr16:2867269-2867538(+)$1	1	87	103	21.3333
...))))))))(((((	chr17:62501773-62502029(-)$1	1	57	73	16.3333
....((((((((...(	chr15:80215309-80215601(-)$1	1	96	112	23.5208
)))..)))))(((((.	chr9:126692083-126692383(-)$1	1	35	51	18.1041
((((((((....((((	chr21:45223339-45223599(+)$1	1	98	114	27.8958
)))))))))))))).)	chr4:129208779-129209062(-)$1	1	51	67	16.9583
.(...((((((.((((	chr9:140323142-140323446(+)$1	1	53	69	21.2291
(..((((((((..(((	chr16:419487-419758(-)$1	1	132	148	17.4791
))((((...(((((((	chr19:38876349-38876634(+)$1	1	95	111	15.8125
(((...(((.(..(..	chr8:30669797-30670094(-)$1	1	49	65	19.7708
.))))..).))))...	chr19:1104607-1104921(+)$1	1	232	248	17.7916
......))))))..((	chr4:39699722-39700080(+)$1	1	135	151	21.5416
..).))))....(((.	chr10:101379818-101380101(-)$1	1	11	27	21.1249
.)))).)))))(((((	chr2:132044797-132045056(+)$1	1	32	48	17.6875
................	chr5:180651179-180651447(+)$1	1	2	18	24.7708
....)))).))).(((	chr11:58346630-58346893(+)$1	1	93	109	19.2500
...........)))).	chr11:65620308-65620570(-)$1	1	231	247	14.0416
))))))).((((((.(	chr4:48344033-48344321(+)$1	1	91	107	24.7708
))....((((((((((	chr12:112035506-112035828(-)$1	1	156	172	17.4791
(..(((..........	chr18:51750757-51751054(-)$1	1	160	176	27.8958
((((((((((((((((	chr12:112035449-112035706(-)$1	1	34	50	17.4791
...)))).))))))))	chr19:10406921-10407208(+)$1	1	251	267	21.6458
(..(.(.((((((...	chr19:2270399-2270619(+)$1	1	115	131	21.5416
)))))(((((((((((	chr16:90086236-90086521(+)$1	1	69	85	19.3541
...(((.(.((((.((	chr7:1481966-1482222(-)$1	1	21	37	17.7916
).(((.((((((..((	chr14:103574604-103574878(+)$1	1	69	85	18.4166
(((((.(((.((.((.	chr11:65343663-65343902(+)$1	1	6	22	19.0416
((.((.((..(.((.(	chr12:19592503-19592764(+)$1	1	97	113	24.7708
((((((((((((((((	chr7:77166747-77167015(+)$1	1	68	84	14.2500
......)).))).)))	chr20:62331700-62331959(-)$1	1	201	217	20.9166
.....(((((.(((((	chr1:155658042-155658334(-)$1	1	131	147	20.7083

#PSSM
G : 0.75	g : 0.18	A : 0.04	C : 0.02	
G : 0.70	g : 0.20	U : 0.04	C : 0.04	
A : 0.49	G : 0.10	a : 0.10	C : 0.10	U : 0.08	c : 0.06	g : 0.04	
G : 0.68	g : 0.22	U : 0.04	C : 0.04	
C : 0.41	G : 0.20	g : 0.16	U : 0.14	c : 0.04	a : 0.02	
G : 0.25	A : 0.25	U : 0.16	a : 0.12	C : 0.10	g : 0.06	u : 0.02	c : 0.02	
G : 0.68	g : 0.18	C : 0.04	U : 0.02	a : 0.02	A : 0.02	c : 0.02	
G : 0.70	g : 0.25	U : 0.04	
A : 0.37	G : 0.16	a : 0.12	C : 0.10	U : 0.10	g : 0.08	c : 0.04	
G : 0.70	g : 0.18	C : 0.04	a : 0.04	c : 0.02	
G : 0.66	g : 0.20	C : 0.06	a : 0.02	c : 0.02	A : 0.02	
A : 0.27	a : 0.18	G : 0.18	C : 0.14	U : 0.14	u : 0.02	c : 0.02	g : 0.02	
G : 0.58	g : 0.22	A : 0.10	U : 0.04	a : 0.02	C : 0.02	
G : 0.52	g : 0.22	C : 0.14	U : 0.06	a : 0.02	A : 0.02	
G : 0.56	g : 0.12	C : 0.10	a : 0.08	A : 0.06	c : 0.04	U : 0.02	
G : 0.70	g : 0.25	C : 0.02	U : 0.02	

#score	931.4999999999998
#seq	48
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_CDS_m2_run2.nuc.txt

#NT
GCCAUGG	chr17:73314718-73314965(-)$1	247	93	100	12.3281
CCCCUGG	chr15:74327935-74328232(+)$1	297	211	218	12.8750
GCCCGGG	chr12:54576187-54576524(-)$1	337	61	68	12.7187
UCCCUGG	chr7:56147453-56147692(+)$1	239	200	207	12.8750
GUCCUGG	chr6:33164181-33164423(-)$1	242	181	188	12.6406
GCCCAGG	chr16:31502018-31502267(-)$1	249	133	140	13.0312
GCCCCGG	chr1:156713495-156713770(-)$1	275	23	30	12.7187
ACCCUGG	chr20:61919700-61919988(+)$1	288	235	242	12.7187
GCCAUGG	chr2:37429933-37430212(+)$1	279	10	17	12.3281
GACCUGG	chr19:47503837-47504088(+)$1	251	116	123	12.5625
GCCCGGG	chr22:43578966-43579236(-)$1	270	150	157	12.7187
UCCCUGG	chr6:32942138-32942390(+)$1	252	102	109	12.8750
GCACUGG	chr17:46137095-46137450(+)$1	355	67	74	12.0156
CCCCUGG	chr5:140905606-140905819(-)$1	213	7	14	12.8750
GCCCUGA	chr17:60767944-60768205(+)$1	261	29	36	12.1718
gccuugg	chr4:2939899-2940172(-)$1	273	154	161	12.2500
GCCCUGG	chr22:42981220-42981474(-)$1	254	127	134	16.4687
GCCCUGG	chr17:73823396-73823703(-)$1	307	122	129	16.4687
GCUCUGG	chr15:44087183-44087437(+)$1	254	242	249	12.2500
GCCCAGG	chr9:139566277-139566528(+)$1	251	69	76	13.0312
GCCCAGG	chr19:49377112-49377362(+)$1	250	45	52	13.0312
GCCUUGG	chr18:12427188-12427423(+)$1	235	75	82	12.2500
GCCCUGA	chr19:41246784-41247068(-)$1	284	62	69	12.1718
GCUCUGG	chr17:7491307-7491583(+)$1	276	95	102	12.2500
GCUCUGG	chr22:31285380-31285621(+)$1	241	50	57	12.2500
GCCCUUG	chr7:150779466-150779680(-)$1	214	102	109	11.7812
GCCCCGG	chr20:25207120-25207390(+)$1	270	96	103	12.7187
GGCCUGG	chr1:6694603-6694862(-)$1	259	159	166	12.6406
CCCCUGG	chr19:4366837-4367088(-)$1	251	58	65	12.8750
GUCCUGG	chr16:2821479-2821753(-)$1	274	204	211	12.6406
GCCCUGA	chr3:49758609-49758960(-)$1	351	29	36	12.1718
GCCUUGG	chr1:2522421-2522648(+)$1	227	0	7	12.2500
GGCCUGG	chr1:6694510-6694773(-)$1	263	70	77	12.6406
UCCCUGG	chr16:30681408-30681686(+)$1	278	183	190	12.8750
ACCCUGG	chr19:1206879-1207119(+)$1	240	19	26	12.7187
GCCCAGG	chr16:69354043-69354272(+)$1	229	160	167	13.0312
GCCCGGG	chr17:3827911-3828214(-)$1	303	120	127	12.7187
GCCCAGG	chr19:3055570-3055790(-)$1	220	29	36	13.0312
GCCCUGG	chr22:19708035-19708260(+)$1	225	187	194	16.4687
GCCCAGG	chr19:55747911-55748133(-)$1	222	28	35	13.0312
CCCCUGG	chr7:150068261-150068550(+)$1	289	93	100	12.8750
GCCAUGG	chr1:45480381-45480608(+)$1	227	131	138	12.3281
GCCCCGG	chr22:35743095-35743348(+)$1	253	55	62	12.7187
UCCCUGG	chr12:57910698-57910945(-)$1	247	108	115	12.8750
GCUCUGG	chr7:149576620-149576874(+)$1	254	39	46	12.2500
GCCCUGG	chr11:61120453-61120697(-)$1	244	115	122	16.4687
GACCUGG	chr19:51301386-51301640(-)$1	254	195	202	12.5625
ACCCUGG	chr17:79826487-79826737(-)$1	250	103	110	12.7187
GCCAUGG	chr2:37429825-37430076(+)$1	251	118	125	12.3281
GUCCUGG	chr22:39917677-39917896(+)$1	219	21	28	12.6406
ggccugg	chr19:1585067-1585317(-)$1	250	46	53	12.6406
GCCCUGA	chr17:79781187-79781420(-)$1	233	0	7	12.1718
gcccagg	chr14:74187924-74188176(-)$1	252	50	57	13.0312
GCCCUGG	chr19:3542729-3542972(-)$1	243	36	43	16.4687
GCCCUAG	chr17:37070504-37070722(+)$1	218	110	117	11.8593
GCCCUAG	chr17:60765775-60766035(+)$1	260	218	225	11.8593
GGCCUGG	chr11:61116990-61117269(-)$1	279	170	177	12.6406
GUCCUGG	chr19:45854451-45854689(-)$1	238	89	96	12.6406
GCCCUGU	chr19:18677843-18678072(+)$1	229	71	78	11.9375
GCGCUGG	chr19:3784235-3784523(-)$1	288	76	83	12.0156
GCCCUGG	chr7:149576492-149576732(+)$1	240	106	113	16.4687
UCCCUGG	chr22:39918468-39918718(+)$1	250	58	65	12.8750
CCCCUGG	chr1:879992-880219(-)$1	227	69	76	12.8750

#otherMatches

#Struct PSSM
c[eeeee	chr1:36808866-36809108(-)$1	242	13	20	12.5625
G~~~~DD	chr17:73314718-73314965(-)$1	247	93	100	12.3281
fflllff	chr15:74327935-74328232(+)$1	297	211	218	12.8750
E{DDDDH	chr12:54576187-54576524(-)$1	337	61	68	12.7187
IIEEEEE	chr7:56147453-56147692(+)$1	239	200	207	12.8750
ggggggg	chr6:33164181-33164423(-)$1	242	181	188	12.6406
bbeeeee	chr16:31502018-31502267(-)$1	249	133	140	13.0312
####ggg	chr1:156713495-156713770(-)$1	275	23	30	12.7187
??EEEEE	chr20:61919700-61919988(+)$1	288	235	242	12.7187
::::eee	chr2:37429933-37430212(+)$1	279	10	17	12.3281
nnnnccc	chr19:47503837-47504088(+)$1	251	116	123	12.5625
:ffffff	chr22:43578966-43579236(-)$1	270	150	157	12.7187
llddddd	chr6:32942138-32942390(+)$1	252	102	109	12.8750
iiiiiii	chr17:46137095-46137450(+)$1	355	67	74	12.0156
EKKCCC{	chr5:140905606-140905819(-)$1	213	7	14	12.8750
IIIIIII	chr17:60767944-60768205(+)$1	261	29	36	12.1718
f!!dddd	chr4:2939899-2940172(-)$1	273	154	161	12.2500
B:fffff	chr22:42981220-42981474(-)$1	254	127	134	16.4687
EEE====	chr17:73823396-73823703(-)$1	307	122	129	16.4687
ppppfff	chr15:44087183-44087437(+)$1	254	242	249	12.2500
iidddd$	chr9:139566277-139566528(+)$1	251	69	76	13.0312
ccc!!dd	chr19:49377112-49377362(+)$1	250	45	52	13.0312
pdddd]e	chr18:12427188-12427423(+)$1	235	75	82	12.2500
=======	chr19:41246784-41247068(-)$1	284	62	69	12.1718
=======	chr17:7491307-7491583(+)$1	276	95	102	12.2500
[dddd[c	chr22:31285380-31285621(+)$1	241	50	57	12.2500
e$$$$$b	chr7:150779466-150779680(-)$1	214	102	109	11.7812
DD:ffff	chr20:25207120-25207390(+)$1	270	96	103	12.7187
bbeeeee	chr1:6694603-6694862(-)$1	259	159	166	12.6406
eeeee[e	chr19:4366837-4367088(-)$1	251	58	65	12.8750
mmmgggg	chr16:2821479-2821753(-)$1	274	204	211	12.6406
=======	chr3:49758609-49758960(-)$1	351	29	36	12.1718
BBDDDD{	chr1:2522421-2522648(+)$1	227	0	7	12.2500
bbeeeee	chr1:6694510-6694773(-)$1	263	70	77	12.6406
gggggg#	chr16:30681408-30681686(+)$1	278	183	190	12.8750
CCCBBgg	chr19:1206879-1207119(+)$1	240	19	26	12.7187
=======	chr16:69354043-69354272(+)$1	229	160	167	13.0312
dddeeee	chr17:3827911-3828214(-)$1	303	120	127	12.7187
ccc!!dd	chr19:3055570-3055790(-)$1	220	29	36	13.0312
]eeeeea	chr22:19708035-19708260(+)$1	225	187	194	16.4687
::cccff	chr19:55747911-55748133(-)$1	222	28	35	13.0312
B{HHHHH	chr7:150068261-150068550(+)$1	289	93	100	12.8750
ddd####	chr1:45480381-45480608(+)$1	227	131	138	12.3281
LLLCCCL	chr22:35743095-35743348(+)$1	253	55	62	12.7187
oooffff	chr12:57910698-57910945(-)$1	247	108	115	12.8750
CKKGGGG	chr7:149576620-149576874(+)$1	254	39	46	12.2500
dddd]cc	chr11:61120453-61120697(-)$1	244	115	122	16.4687
66fffff	chr19:51301386-51301640(-)$1	254	195	202	12.5625
::FFFFF	chr17:79826487-79826737(-)$1	250	103	110	12.7187
::::eee	chr2:37429825-37430076(+)$1	251	118	125	12.3281
qqqqfff	chr22:39917677-39917896(+)$1	219	21	28	12.6406
eee!!cc	chr19:1585067-1585317(-)$1	250	46	53	12.6406
::DDDD{	chr17:79781187-79781420(-)$1	233	0	7	12.1718
ddda999	chr14:74187924-74188176(-)$1	252	50	57	13.0312
==bb[bb	chr19:3542729-3542972(-)$1	243	36	43	16.4687
eeeee[b	chr17:37070504-37070722(+)$1	218	110	117	11.8593
ccmmmmc	chr17:60765775-60766035(+)$1	260	218	225	11.8593
eeee[bb	chr11:61116990-61117269(-)$1	279	170	177	12.6406
eeeee::	chr19:45854451-45854689(-)$1	238	89	96	12.6406
JJJJJJJ	chr19:18677843-18678072(+)$1	229	71	78	11.9375
d]fffff	chr19:3784235-3784523(-)$1	288	76	83	12.0156
iiiiii]	chr7:149576492-149576732(+)$1	240	106	113	16.4687
e[cccnn	chr22:39918468-39918718(+)$1	250	58	65	12.8750
iiiiiii	chr1:879992-880219(-)$1	227	69	76	12.8750

#DB
(.(((((	chr1:36808866-36809108(-)$1	1	13	20	12.5625
)....))	chr17:73314718-73314965(-)$1	1	93	100	12.3281
((...))	chr15:74327935-74328232(+)$1	1	211	218	12.8750
(.(((((	chr12:54576187-54576524(-)$1	1	61	68	12.7187
)))))))	chr7:56147453-56147692(+)$1	1	200	207	12.8750
)))))))	chr6:33164181-33164423(-)$1	1	181	188	12.6406
(((((((	chr16:31502018-31502267(-)$1	1	133	140	13.0312
....(((	chr1:156713495-156713770(-)$1	1	23	30	12.7187
..)))))	chr20:61919700-61919988(+)$1	1	235	242	12.7187
....(((	chr2:37429933-37430212(+)$1	1	10	17	12.3281
....)))	chr19:47503837-47504088(+)$1	1	116	123	12.5625
.((((((	chr22:43578966-43579236(-)$1	1	150	157	12.7187
..)))))	chr6:32942138-32942390(+)$1	1	102	109	12.8750
)))))))	chr17:46137095-46137450(+)$1	1	67	74	12.0156
(..(((.	chr5:140905606-140905819(-)$1	1	7	14	12.8750
(((((((	chr17:60767944-60768205(+)$1	1	29	36	12.1718
(..((((	chr4:2939899-2940172(-)$1	1	154	161	12.2500
(.(((((	chr22:42981220-42981474(-)$1	1	127	134	16.4687
(((((((	chr17:73823396-73823703(-)$1	1	122	129	16.4687
....)))	chr15:44087183-44087437(+)$1	1	242	249	12.2500
((((((.	chr9:139566277-139566528(+)$1	1	69	76	13.0312
(((..((	chr19:49377112-49377362(+)$1	1	45	52	13.0312
.)))).)	chr18:12427188-12427423(+)$1	1	75	82	12.2500
)))))))	chr19:41246784-41247068(-)$1	1	62	69	12.1718
)))))))	chr17:7491307-7491583(+)$1	1	95	102	12.2500
.((((.(	chr22:31285380-31285621(+)$1	1	50	57	12.2500
(.....(	chr7:150779466-150779680(-)$1	1	102	109	11.7812
)).((((	chr20:25207120-25207390(+)$1	1	96	103	12.7187
)))))))	chr1:6694603-6694862(-)$1	1	159	166	12.6406
(((((.(	chr19:4366837-4367088(-)$1	1	58	65	12.8750
...))))	chr16:2821479-2821753(-)$1	1	204	211	12.6406
(((((((	chr3:49758609-49758960(-)$1	1	29	36	12.1718
((((((.	chr1:2522421-2522648(+)$1	1	0	7	12.2500
)))))))	chr1:6694510-6694773(-)$1	1	70	77	12.6406
((((((.	chr16:30681408-30681686(+)$1	1	183	190	12.8750
(((((((	chr19:1206879-1207119(+)$1	1	19	26	12.7187
(((((((	chr16:69354043-69354272(+)$1	1	160	167	13.0312
)))))))	chr17:3827911-3828214(-)$1	1	120	127	12.7187
(((..((	chr19:3055570-3055790(-)$1	1	29	36	13.0312
.))))))	chr22:19708035-19708260(+)$1	1	187	194	16.4687
..(((((	chr19:55747911-55748133(-)$1	1	28	35	13.0312
(.(((((	chr7:150068261-150068550(+)$1	1	93	100	12.8750
(((....	chr1:45480381-45480608(+)$1	1	131	138	12.3281
...(((.	chr22:35743095-35743348(+)$1	1	55	62	12.7187
...))))	chr12:57910698-57910945(-)$1	1	108	115	12.8750
(..((((	chr7:149576620-149576874(+)$1	1	39	46	12.2500
)))).))	chr11:61120453-61120697(-)$1	1	115	122	16.4687
..)))))	chr19:51301386-51301640(-)$1	1	195	202	12.5625
..(((((	chr17:79826487-79826737(-)$1	1	103	110	12.7187
....(((	chr2:37429825-37430076(+)$1	1	118	125	12.3281
....)))	chr22:39917677-39917896(+)$1	1	21	28	12.6406
(((..((	chr19:1585067-1585317(-)$1	1	46	53	12.6406
..((((.	chr17:79781187-79781420(-)$1	1	0	7	12.1718
))))...	chr14:74187924-74188176(-)$1	1	50	57	13.0312
((((.((	chr19:3542729-3542972(-)$1	1	36	43	16.4687
(((((.(	chr17:37070504-37070722(+)$1	1	110	117	11.8593
((....)	chr17:60765775-60766035(+)$1	1	218	225	11.8593
((((.((	chr11:61116990-61117269(-)$1	1	170	177	12.6406
)))))..	chr19:45854451-45854689(-)$1	1	89	96	12.6406
(((((((	chr19:18677843-18678072(+)$1	1	71	78	11.9375
).)))))	chr19:3784235-3784523(-)$1	1	76	83	12.0156
)))))).	chr7:149576492-149576732(+)$1	1	106	113	16.4687
(.(((..	chr22:39918468-39918718(+)$1	1	58	65	12.8750
(((((((	chr1:879992-880219(-)$1	1	69	76	12.8750

#PSSM
G : 0.75	C : 0.07	U : 0.07	A : 0.04	g : 0.04	
C : 0.79	U : 0.06	A : 0.04	G : 0.04	c : 0.03	g : 0.01	
C : 0.85	U : 0.06	c : 0.04	A : 0.01	G : 0.01	
C : 0.85	A : 0.06	U : 0.03	c : 0.03	u : 0.01	
U : 0.76	A : 0.09	G : 0.04	C : 0.04	u : 0.03	a : 0.01	
G : 0.90	g : 0.04	A : 0.03	U : 0.01	
G : 0.87	A : 0.06	g : 0.04	U : 0.01	

#score	827.28125
#seq	64
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_CDS_m1_run2.nuc.txt

#NT
AGC	chr5:130500765-130501045(-)$1	280	37	40	9.0000
AGC	chr19:54653302-54653589(+)$1	287	10	13	9.0000
AGC	chr17:30821614-30821891(-)$1	277	4	7	9.0000
AGC	chr11:32953657-32953913(+)$1	256	12	15	9.0000
AGC	chr22:38258932-38259145(+)$1	213	59	62	9.0000
AGC	chr2:130929820-130930029(-)$1	209	73	76	9.0000
AGC	chrX:48382132-48382457(+)$1	325	7	10	9.0000
AGC	chr16:28847190-28847427(+)$1	237	86	89	9.0000
AGC	chr6:4891894-4892181(+)$1	287	127	130	9.0000
AGC	chr7:99055867-99056079(-)$1	212	27	30	9.0000
AGC	chr3:53326288-53326646(-)$1	358	18	21	9.0000
AGC	chr16:28845599-28845817(+)$1	218	26	29	9.0000
AGC	chr7:107399237-107399512(+)$1	275	17	20	9.0000
AGC	chr16:88943235-88943491(-)$1	256	24	27	9.0000
agc	chr12:92539066-92539348(-)$1	282	4	7	9.0000
AGC	chr1:234743329-234743561(-)$1	232	44	47	9.0000
AGC	chr20:45938741-45938990(-)$1	249	64	67	9.0000
AGC	chr17:66039976-66040251(+)$1	275	51	54	9.0000
AGC	chr4:73957057-73957319(-)$1	262	26	29	9.0000
AGC	chr11:33308136-33308403(+)$1	267	108	111	9.0000
AGC	chr15:67813702-67813949(+)$1	247	8	11	9.0000
AGC	chr17:40765863-40766110(+)$1	247	20	23	9.0000
AGC	chr13:25886918-25887130(+)$1	212	109	112	9.0000
AGC	chr18:57000280-57000565(-)$1	285	130	133	9.0000
AGC	chr14:55529355-55529620(+)$1	265	28	31	9.0000
AGC	chr16:30676582-30676809(+)$1	227	42	45	9.0000
AGC	chr1:150939175-150939398(-)$1	223	26	29	9.0000
AGC	chr17:7147445-7147663(-)$1	218	127	130	9.0000
AGC	chr17:80545002-80545249(+)$1	247	65	68	9.0000
AGC	chr16:28846498-28846709(+)$1	211	51	54	9.0000
AGC	chr11:118887971-118888207(-)$1	236	8	11	9.0000
AGC	chr15:75137387-75137660(-)$1	273	132	135	9.0000
agc	chr12:56667443-56667678(-)$1	235	13	16	9.0000
AGC	chr3:47452112-47452440(+)$1	328	16	19	9.0000
AGC	chr5:96357947-96358281(+)$1	334	27	30	9.0000
AGC	chr1:42656875-42657127(-)$1	252	2	5	9.0000
AGC	chr19:35648223-35648452(+)$1	229	134	137	9.0000
AGC	chr12:49445229-49445457(-)$1	228	183	186	9.0000
AGC	chr20:48604488-48604758(+)$1	270	67	70	9.0000
AGC	chr14:100808673-100808906(-)$1	233	54	57	9.0000
AGC	chr11:17098914-17099125(-)$1	211	24	27	9.0000
AGC	chr3:183961479-183961701(-)$1	222	51	54	9.0000
AGC	chr12:124839883-124840218(-)$1	335	29	32	9.0000
AGC	chr6:4892095-4892366(+)$1	271	11	14	9.0000
AGC	chr1:26606499-26606791(+)$1	292	19	22	9.0000
AGC	chrX:47088028-47088259(+)$1	231	23	26	9.0000
AGC	chr19:50434140-50434382(+)$1	242	17	20	9.0000
AGC	chr16:139610-139866(-)$1	256	0	3	9.0000
AGC	chr19:48887583-48887823(-)$1	240	133	136	9.0000
AGC	chr11:17096948-17097191(-)$1	243	151	154	9.0000
AGC	chr8:101718849-101719118(-)$1	269	49	52	9.0000
AGC	chr15:66792388-66792606(-)$1	218	90	93	9.0000
AGC	chr14:102375837-102376085(+)$1	248	12	15	9.0000
AGC	chr8:23428958-23429176(+)$1	218	3	6	9.0000
AGC	chr5:620138-620426(+)$1	288	139	142	9.0000
AGC	chr3:12627076-12627342(-)$1	266	35	38	9.0000
AGC	chr14:100809560-100809823(-)$1	263	48	51	9.0000
AGC	chrX:129147251-129147504(+)$1	253	96	99	9.0000
AGC	chr8:145066615-145066857(+)$1	242	59	62	9.0000
AGC	chr3:40352282-40352567(+)$1	285	176	179	9.0000
AGC	chr9:134019834-134020047(+)$1	213	30	33	9.0000
AGC	chr4:48384642-48385001(+)$1	359	143	146	9.0000
AGC	chr2:171822327-171822585(+)$1	258	73	76	9.0000
AGC	chr9:134064350-134064612(+)$1	262	111	114	9.0000
AGC	chr11:32955214-32955467(+)$1	253	6	9	9.0000
AGC	chr15:72511183-72511401(-)$1	218	9	12	9.0000
AGC	chr12:54063570-54063823(-)$1	253	97	100	9.0000
AGC	chr19:2270574-2270845(+)$1	271	39	42	9.0000
AGC	chr6:34212722-34212935(+)$1	213	102	105	9.0000
AGC	chr17:65936591-65936874(+)$1	283	2	5	9.0000
AGC	chr8:101718812-101719049(-)$1	237	14	17	9.0000
AGC	chr7:4794873-4795101(+)$1	228	4	7	9.0000
AGC	chr4:110354888-110355184(+)$1	296	4	7	9.0000
AGC	chr1:84967528-84967753(-)$1	225	111	114	9.0000
AGC	chr16:28844514-28844755(+)$1	241	70	73	9.0000
AGC	chr19:16664399-16664662(-)$1	263	5	8	9.0000
AGC	chr6:43498359-43498659(-)$1	300	132	135	9.0000
AGC	chr9:127911820-127912094(-)$1	274	230	233	9.0000
AGC	chr8:117658632-117658863(-)$1	231	25	28	9.0000
AGC	chr6:31762778-31763030(-)$1	252	78	81	9.0000
AGC	chr16:30676609-30676823(+)$1	214	15	18	9.0000
AGC	chr5:138269674-138269938(+)$1	264	48	51	9.0000
AGC	chr6:30672774-30673039(-)$1	265	13	16	9.0000
AGC	chr2:171822427-171822681(+)$1	254	24	27	9.0000
AGC	chr11:17099065-17099267(-)$1	202	105	108	9.0000
AGC	chr17:34856829-34857176(-)$1	347	30	33	9.0000
AGC	chr4:73957269-73957519(-)$1	250	22	25	9.0000
AGC	chr6:31598392-31598628(+)$1	236	13	16	9.0000
AGC	chr6:30672164-30672415(-)$1	251	54	57	9.0000
AGC	chr6:44197303-44197550(+)$1	247	79	82	9.0000
AGC	chr14:52468415-52468680(+)$1	265	16	19	9.0000
AGC	chr22:20918635-20918848(+)$1	213	38	41	9.0000
AGC	chr1:78422164-78422432(-)$1	268	45	48	9.0000
AGC	chr12:57106745-57106973(-)$1	228	15	18	9.0000
AGC	chr4:152022187-152022414(+)$1	227	26	29	9.0000
AGC	chr1:16262600-16262862(+)$1	262	29	32	9.0000
AGC	chr1:116946956-116947202(+)$1	246	29	32	9.0000
AGC	chr2:171822234-171822470(+)$1	236	166	169	9.0000
AGC	chr19:40875714-40875955(+)$1	241	57	60	9.0000

#otherMatches

#Struct PSSM
SSS	chr11:119206570-119206794(+)$1	224	36	39	9.0000
EEE	chr5:130500765-130501045(-)$1	280	37	40	9.0000
mbb	chr19:54653302-54653589(+)$1	287	10	13	9.0000
DDL	chr17:30821614-30821891(-)$1	277	4	7	9.0000
ee:	chr11:32953657-32953913(+)$1	256	12	15	9.0000
ddd	chr22:38258932-38259145(+)$1	213	59	62	9.0000
^^^	chr2:130929820-130930029(-)$1	209	73	76	9.0000
EEE	chrX:48382132-48382457(+)$1	325	7	10	9.0000
&ee	chr16:28847190-28847427(+)$1	237	86	89	9.0000
:ff	chr6:4891894-4892181(+)$1	287	127	130	9.0000
ddd	chr7:99055867-99056079(-)$1	212	27	30	9.0000
ooo	chr3:53326288-53326646(-)$1	358	18	21	9.0000
mme	chr16:28845599-28845817(+)$1	218	26	29	9.0000
nff	chr7:107399237-107399512(+)$1	275	17	20	9.0000
ccc	chr16:88943235-88943491(-)$1	256	24	27	9.0000
:::	chr12:92539066-92539348(-)$1	282	4	7	9.0000
!!a	chr1:234743329-234743561(-)$1	232	44	47	9.0000
ddb	chr20:45938741-45938990(-)$1	249	64	67	9.0000
nnn	chr17:66039976-66040251(+)$1	275	51	54	9.0000
:::	chr4:73957057-73957319(-)$1	262	26	29	9.0000
fff	chr11:33308136-33308403(+)$1	267	108	111	9.0000
[gg	chr15:67813702-67813949(+)$1	247	8	11	9.0000
fff	chr17:40765863-40766110(+)$1	247	20	23	9.0000
CCC	chr13:25886918-25887130(+)$1	212	109	112	9.0000
:bb	chr18:57000280-57000565(-)$1	285	130	133	9.0000
EEE	chr14:55529355-55529620(+)$1	265	28	31	9.0000
^^^	chr16:30676582-30676809(+)$1	227	42	45	9.0000
EA{	chr1:150939175-150939398(-)$1	223	26	29	9.0000
ggg	chr17:7147445-7147663(-)$1	218	127	130	9.0000
FFF	chr17:80545002-80545249(+)$1	247	65	68	9.0000
b''	chr16:28846498-28846709(+)$1	211	51	54	9.0000
MMM	chr11:118887971-118888207(-)$1	236	8	11	9.0000
[cc	chr15:75137387-75137660(-)$1	273	132	135	9.0000
EEE	chr12:56667443-56667678(-)$1	235	13	16	9.0000
NFF	chr3:47452112-47452440(+)$1	328	16	19	9.0000
mmm	chr5:96357947-96358281(+)$1	334	27	30	9.0000
:::	chr1:42656875-42657127(-)$1	252	2	5	9.0000
g[a	chr19:35648223-35648452(+)$1	229	134	137	9.0000
bb2	chr12:49445229-49445457(-)$1	228	183	186	9.0000
ddd	chr20:48604488-48604758(+)$1	270	67	70	9.0000
ddd	chr14:100808673-100808906(-)$1	233	54	57	9.0000
eee	chr11:17098914-17099125(-)$1	211	24	27	9.0000
{EE	chr3:183961479-183961701(-)$1	222	51	54	9.0000
{AK	chr12:124839883-124840218(-)$1	335	29	32	9.0000
ddd	chr6:4892095-4892366(+)$1	271	11	14	9.0000
{DD	chr1:26606499-26606791(+)$1	292	19	22	9.0000
^^^	chrX:47088028-47088259(+)$1	231	23	26	9.0000
hhh	chr19:50434140-50434382(+)$1	242	17	20	9.0000
:::	chr16:139610-139866(-)$1	256	0	3	9.0000
:DD	chr19:48887583-48887823(-)$1	240	133	136	9.0000
ccc	chr11:17096948-17097191(-)$1	243	151	154	9.0000
ccc	chr8:101718849-101719118(-)$1	269	49	52	9.0000
!bb	chr15:66792388-66792606(-)$1	218	90	93	9.0000
{A{	chr14:102375837-102376085(+)$1	248	12	15	9.0000
DDD	chr8:23428958-23429176(+)$1	218	3	6	9.0000
ddd	chr5:620138-620426(+)$1	288	139	142	9.0000
##e	chr3:12627076-12627342(-)$1	266	35	38	9.0000
cc2	chr14:100809560-100809823(-)$1	263	48	51	9.0000
ee:	chrX:129147251-129147504(+)$1	253	96	99	9.0000
EJJ	chr8:145066615-145066857(+)$1	242	59	62	9.0000
fff	chr3:40352282-40352567(+)$1	285	176	179	9.0000
HH:	chr9:134019834-134020047(+)$1	213	30	33	9.0000
FFF	chr4:48384642-48385001(+)$1	359	143	146	9.0000
dii	chr2:171822327-171822585(+)$1	258	73	76	9.0000
:cc	chr9:134064350-134064612(+)$1	262	111	114	9.0000
G{A	chr11:32955214-32955467(+)$1	253	6	9	9.0000
DDD	chr15:72511183-72511401(-)$1	218	9	12	9.0000
fff	chr12:54063570-54063823(-)$1	253	97	100	9.0000
ddd	chr19:2270574-2270845(+)$1	271	39	42	9.0000
^ee	chr6:34212722-34212935(+)$1	213	102	105	9.0000
dds	chr17:65936591-65936874(+)$1	283	2	5	9.0000
:::	chr8:101718812-101719049(-)$1	237	14	17	9.0000
ccc	chr7:4794873-4795101(+)$1	228	4	7	9.0000
ddd	chr4:110354888-110355184(+)$1	296	4	7	9.0000
d[h	chr1:84967528-84967753(-)$1	225	111	114	9.0000
]a9	chr16:28844514-28844755(+)$1	241	70	73	9.0000
DBB	chr19:16664399-16664662(-)$1	263	5	8	9.0000
fff	chr6:43498359-43498659(-)$1	300	132	135	9.0000
:cc	chr9:127911820-127912094(-)$1	274	230	233	9.0000
:FF	chr8:117658632-117658863(-)$1	231	25	28	9.0000
===	chr6:31762778-31763030(-)$1	252	78	81	9.0000
:dd	chr16:30676609-30676823(+)$1	214	15	18	9.0000
]bb	chr5:138269674-138269938(+)$1	264	48	51	9.0000
EEE	chr6:30672774-30673039(-)$1	265	13	16	9.0000
eee	chr2:171822427-171822681(+)$1	254	24	27	9.0000
mmf	chr11:17099065-17099267(-)$1	202	105	108	9.0000
mcc	chr17:34856829-34857176(-)$1	347	30	33	9.0000
bb[	chr4:73957269-73957519(-)$1	250	22	25	9.0000
ppp	chr6:31598392-31598628(+)$1	236	13	16	9.0000
eee	chr6:30672164-30672415(-)$1	251	54	57	9.0000
c]i	chr6:44197303-44197550(+)$1	247	79	82	9.0000
fff	chr14:52468415-52468680(+)$1	265	16	19	9.0000
KKA	chr22:20918635-20918848(+)$1	213	38	41	9.0000
BB:	chr1:78422164-78422432(-)$1	268	45	48	9.0000
FFF	chr12:57106745-57106973(-)$1	228	15	18	9.0000
ssd	chr4:152022187-152022414(+)$1	227	26	29	9.0000
i22	chr1:16262600-16262862(+)$1	262	29	32	9.0000
dd!	chr1:116946956-116947202(+)$1	246	29	32	9.0000
ee:	chr2:171822234-171822470(+)$1	236	166	169	9.0000
hhh	chr19:40875714-40875955(+)$1	241	57	60	9.0000

#DB
...	chr11:119206570-119206794(+)$1	1	36	39	9.0000
(((	chr5:130500765-130501045(-)$1	1	37	40	9.0000
.))	chr19:54653302-54653589(+)$1	1	10	13	9.0000
((.	chr17:30821614-30821891(-)$1	1	4	7	9.0000
)).	chr11:32953657-32953913(+)$1	1	12	15	9.0000
(((	chr22:38258932-38259145(+)$1	1	59	62	9.0000
...	chr2:130929820-130930029(-)$1	1	73	76	9.0000
(((	chrX:48382132-48382457(+)$1	1	7	10	9.0000
.((	chr16:28847190-28847427(+)$1	1	86	89	9.0000
.((	chr6:4891894-4892181(+)$1	1	127	130	9.0000
(((	chr7:99055867-99056079(-)$1	1	27	30	9.0000
...	chr3:53326288-53326646(-)$1	1	18	21	9.0000
..)	chr16:28845599-28845817(+)$1	1	26	29	9.0000
.))	chr7:107399237-107399512(+)$1	1	17	20	9.0000
)))	chr16:88943235-88943491(-)$1	1	24	27	9.0000
...	chr12:92539066-92539348(-)$1	1	4	7	9.0000
..(	chr1:234743329-234743561(-)$1	1	44	47	9.0000
)))	chr20:45938741-45938990(-)$1	1	64	67	9.0000
...	chr17:66039976-66040251(+)$1	1	51	54	9.0000
...	chr4:73957057-73957319(-)$1	1	26	29	9.0000
)))	chr11:33308136-33308403(+)$1	1	108	111	9.0000
.((	chr15:67813702-67813949(+)$1	1	8	11	9.0000
(((	chr17:40765863-40766110(+)$1	1	20	23	9.0000
(((	chr13:25886918-25887130(+)$1	1	109	112	9.0000
.((	chr18:57000280-57000565(-)$1	1	130	133	9.0000
(((	chr14:55529355-55529620(+)$1	1	28	31	9.0000
...	chr16:30676582-30676809(+)$1	1	42	45	9.0000
((.	chr1:150939175-150939398(-)$1	1	26	29	9.0000
(((	chr17:7147445-7147663(-)$1	1	127	130	9.0000
(((	chr17:80545002-80545249(+)$1	1	65	68	9.0000
(..	chr16:28846498-28846709(+)$1	1	51	54	9.0000
...	chr11:118887971-118888207(-)$1	1	8	11	9.0000
.((	chr15:75137387-75137660(-)$1	1	132	135	9.0000
(((	chr12:56667443-56667678(-)$1	1	13	16	9.0000
.((	chr3:47452112-47452440(+)$1	1	16	19	9.0000
...	chr5:96357947-96358281(+)$1	1	27	30	9.0000
...	chr1:42656875-42657127(-)$1	1	2	5	9.0000
(.(	chr19:35648223-35648452(+)$1	1	134	137	9.0000
)).	chr12:49445229-49445457(-)$1	1	183	186	9.0000
)))	chr20:48604488-48604758(+)$1	1	67	70	9.0000
)))	chr14:100808673-100808906(-)$1	1	54	57	9.0000
(((	chr11:17098914-17099125(-)$1	1	24	27	9.0000
.((	chr3:183961479-183961701(-)$1	1	51	54	9.0000
.(.	chr12:124839883-124840218(-)$1	1	29	32	9.0000
(((	chr6:4892095-4892366(+)$1	1	11	14	9.0000
.((	chr1:26606499-26606791(+)$1	1	19	22	9.0000
...	chrX:47088028-47088259(+)$1	1	23	26	9.0000
(((	chr19:50434140-50434382(+)$1	1	17	20	9.0000
...	chr16:139610-139866(-)$1	1	0	3	9.0000
.))	chr19:48887583-48887823(-)$1	1	133	136	9.0000
(((	chr11:17096948-17097191(-)$1	1	151	154	9.0000
(((	chr8:101718849-101719118(-)$1	1	49	52	9.0000
.((	chr15:66792388-66792606(-)$1	1	90	93	9.0000
.(.	chr14:102375837-102376085(+)$1	1	12	15	9.0000
(((	chr8:23428958-23429176(+)$1	1	3	6	9.0000
(((	chr5:620138-620426(+)$1	1	139	142	9.0000
..(	chr3:12627076-12627342(-)$1	1	35	38	9.0000
)).	chr14:100809560-100809823(-)$1	1	48	51	9.0000
)).	chrX:129147251-129147504(+)$1	1	96	99	9.0000
(((	chr8:145066615-145066857(+)$1	1	59	62	9.0000
)))	chr3:40352282-40352567(+)$1	1	176	179	9.0000
((.	chr9:134019834-134020047(+)$1	1	30	33	9.0000
)))	chr4:48384642-48385001(+)$1	1	143	146	9.0000
)((	chr2:171822327-171822585(+)$1	1	73	76	9.0000
.((	chr9:134064350-134064612(+)$1	1	111	114	9.0000
(.(	chr11:32955214-32955467(+)$1	1	6	9	9.0000
(((	chr15:72511183-72511401(-)$1	1	9	12	9.0000
(((	chr12:54063570-54063823(-)$1	1	97	100	9.0000
(((	chr19:2270574-2270845(+)$1	1	39	42	9.0000
.))	chr6:34212722-34212935(+)$1	1	102	105	9.0000
((.	chr17:65936591-65936874(+)$1	1	2	5	9.0000
...	chr8:101718812-101719049(-)$1	1	14	17	9.0000
(((	chr7:4794873-4795101(+)$1	1	4	7	9.0000
(((	chr4:110354888-110355184(+)$1	1	4	7	9.0000
(.(	chr1:84967528-84967753(-)$1	1	111	114	9.0000
.).	chr16:28844514-28844755(+)$1	1	70	73	9.0000
(((	chr19:16664399-16664662(-)$1	1	5	8	9.0000
(((	chr6:43498359-43498659(-)$1	1	132	135	9.0000
.((	chr9:127911820-127912094(-)$1	1	230	233	9.0000
.((	chr8:117658632-117658863(-)$1	1	25	28	9.0000
(((	chr6:31762778-31763030(-)$1	1	78	81	9.0000
.((	chr16:30676609-30676823(+)$1	1	15	18	9.0000
.))	chr5:138269674-138269938(+)$1	1	48	51	9.0000
(((	chr6:30672774-30673039(-)$1	1	13	16	9.0000
)))	chr2:171822427-171822681(+)$1	1	24	27	9.0000
..)	chr11:17099065-17099267(-)$1	1	105	108	9.0000
.))	chr17:34856829-34857176(-)$1	1	30	33	9.0000
((.	chr4:73957269-73957519(-)$1	1	22	25	9.0000
...	chr6:31598392-31598628(+)$1	1	13	16	9.0000
)))	chr6:30672164-30672415(-)$1	1	54	57	9.0000
).)	chr6:44197303-44197550(+)$1	1	79	82	9.0000
(((	chr14:52468415-52468680(+)$1	1	16	19	9.0000
..(	chr22:20918635-20918848(+)$1	1	38	41	9.0000
((.	chr1:78422164-78422432(-)$1	1	45	48	9.0000
(((	chr12:57106745-57106973(-)$1	1	15	18	9.0000
..)	chr4:152022187-152022414(+)$1	1	26	29	9.0000
)..	chr1:16262600-16262862(+)$1	1	29	32	9.0000
((.	chr1:116946956-116947202(+)$1	1	29	32	9.0000
)).	chr2:171822234-171822470(+)$1	1	166	169	9.0000
(((	chr19:40875714-40875955(+)$1	1	57	60	9.0000

#PSSM
A : 0.98	a : 0.02	
G : 0.98	g : 0.02	
C : 0.98	c : 0.02	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_CDS_m1_run1.nuc.txt

#NT
UCCUG	chr9:102747148-102747454(-)$1	306	106	111	15.0000
UCCUG	chr8:11708273-11708520(-)$1	247	128	133	15.0000
UCCUG	chr1:160319283-160319559(+)$1	276	18	23	15.0000
UCCUG	chr13:46722445-46722661(-)$1	216	141	146	15.0000
UCCUG	chr1:155160566-155160888(-)$1	322	152	157	15.0000
UCCUG	chrX:77110902-77111188(-)$1	286	35	40	15.0000
UCCUG	chr15:64452267-64452490(-)$1	223	18	23	15.0000
UCCUG	chr10:73578273-73578476(-)$1	203	164	169	15.0000
UCCUG	chr19:47285646-47285866(-)$1	220	94	99	15.0000
UCCUG	chr11:62397260-62397481(-)$1	221	111	116	15.0000
UCCUG	chr1:43393292-43393536(-)$1	244	128	133	15.0000
UCCUG	chr7:65439197-65439475(-)$1	278	34	39	15.0000
UCCUG	chr13:30091212-30091537(-)$1	325	306	311	15.0000
UCCUG	chr1:145439975-145440196(+)$1	221	95	100	15.0000
UCCUG	chr11:118968113-118968340(-)$1	227	205	210	15.0000
UCCUG	chr18:3277150-3277422(+)$1	272	172	177	15.0000
UCCUG	chr11:61070078-61070322(-)$1	244	35	40	15.0000
UCCUG	chr6:7301526-7301775(-)$1	249	166	171	15.0000
UCCUG	chr1:12014822-12015050(+)$1	228	56	61	15.0000
UCCUG	chr3:127788276-127788546(+)$1	270	95	100	15.0000
UCCUG	chr6:43479934-43480154(-)$1	220	104	109	15.0000
UCCUG	chr11:118967770-118968051(-)$1	281	183	188	15.0000
UCCUG	chr11:9304991-9305241(-)$1	250	178	183	15.0000
UCCUG	chr8:22885792-22886043(-)$1	251	63	68	15.0000
UCCUG	chr16:74537356-74537656(-)$1	300	57	62	15.0000
UCCUG	chr1:31206638-31206864(-)$1	226	104	109	15.0000
UCCUG	chr11:62652954-62653169(+)$1	215	116	121	15.0000
UCCUG	chr1:111440334-111440548(+)$1	214	136	141	15.0000
UCCUG	chr11:6637594-6637834(-)$1	240	35	40	15.0000
UCCUG	chr12:125294658-125294936(-)$1	278	175	180	15.0000
UCCUG	chr18:29115193-29115469(+)$1	276	114	119	15.0000
UCCUG	chr19:13054269-13054475(+)$1	206	185	190	15.0000
UCCUG	chr7:100225316-100225541(-)$1	225	1	6	15.0000
UCCUG	chr4:88293819-88294067(-)$1	248	117	122	15.0000
UCCUG	chr19:47280169-47280390(-)$1	221	137	142	15.0000
UCCUG	chr1:55509553-55509807(+)$1	254	86	91	15.0000
UCCUG	chr18:28650670-28650917(-)$1	247	104	109	15.0000
UCCUG	chr22:36657608-36657869(+)$1	261	102	107	15.0000
UCCUG	chr19:49414305-49414521(+)$1	216	124	129	15.0000
UCCUG	chr17:76968955-76969212(-)$1	257	55	60	15.0000
UCCUG	chr2:48026737-48026982(+)$1	245	224	229	15.0000
UCCUG	chr2:188332379-188332685(-)$1	306	10	15	15.0000
UCCUG	chr1:113650130-113650402(+)$1	272	77	82	15.0000
UCCUG	chr19:45375191-45375438(+)$1	247	22	27	15.0000
UCCUG	chr12:56120852-56121084(-)$1	232	7	12	15.0000
UCCUG	chr3:14182991-14183233(+)$1	242	111	116	15.0000
UCCUG	chr13:30088559-30088814(-)$1	255	167	172	15.0000
UCCUG	chr7:107545797-107546046(+)$1	249	139	144	15.0000
UCCUG	chr6:30690601-30690843(+)$1	242	117	122	15.0000
UCCUG	chr12:74932022-74932274(+)$1	252	211	216	15.0000
UCCUG	chr9:33135109-33135391(-)$1	282	158	163	15.0000
UCCUG	chr22:39141588-39141918(-)$1	330	155	160	15.0000
UCCUG	chr19:47280131-47280334(-)$1	203	81	86	15.0000
UCCUG	chr19:47285666-47285905(-)$1	239	133	138	15.0000

#otherMatches

#Struct PSSM
5eeee	chr1:226253374-226253610(+)$1	236	171	176	15.0000
ddd[d	chr9:102747148-102747454(-)$1	306	106	111	15.0000
IIBBC	chr8:11708273-11708520(-)$1	247	128	133	15.0000
ffff!	chr1:160319283-160319559(+)$1	276	18	23	15.0000
beeee	chr13:46722445-46722661(-)$1	216	141	146	15.0000
:::cc	chr1:155160566-155160888(-)$1	322	152	157	15.0000
:::ff	chrX:77110902-77111188(-)$1	286	35	40	15.0000
GGGGM	chr15:64452267-64452490(-)$1	223	18	23	15.0000
###bb	chr10:73578273-73578476(-)$1	203	164	169	15.0000
5dddd	chr19:47285646-47285866(-)$1	220	94	99	15.0000
eeeec	chr11:62397260-62397481(-)$1	221	111	116	15.0000
IIII:	chr1:43393292-43393536(-)$1	244	128	133	15.0000
{AFFF	chr7:65439197-65439475(-)$1	278	34	39	15.0000
""amm	chr13:30091212-30091537(-)$1	325	306	311	15.0000
dddd"	chr1:145439975-145440196(+)$1	221	95	100	15.0000
BB}CC	chr11:118968113-118968340(-)$1	227	205	210	15.0000
yyyyy	chr18:3277150-3277422(+)$1	272	172	177	15.0000
edddd	chr11:61070078-61070322(-)$1	244	35	40	15.0000
EEEEE	chr6:7301526-7301775(-)$1	249	166	171	15.0000
GGddd	chr1:12014822-12015050(+)$1	228	56	61	15.0000
hhhhh	chr3:127788276-127788546(+)$1	270	95	100	15.0000
bbddd	chr6:43479934-43480154(-)$1	220	104	109	15.0000
:DDDD	chr11:118967770-118968051(-)$1	281	183	188	15.0000
3gggg	chr11:9304991-9305241(-)$1	250	178	183	15.0000
hhhhh	chr8:22885792-22886043(-)$1	251	63	68	15.0000
2ccc:	chr16:74537356-74537656(-)$1	300	57	62	15.0000
f[bbc	chr1:31206638-31206864(-)$1	226	104	109	15.0000
hhhhh	chr11:62652954-62653169(+)$1	215	116	121	15.0000
dddqq	chr1:111440334-111440548(+)$1	214	136	141	15.0000
DDDD{	chr11:6637594-6637834(-)$1	240	35	40	15.0000
fff!!	chr12:125294658-125294936(-)$1	278	175	180	15.0000
DD{DD	chr18:29115193-29115469(+)$1	276	114	119	15.0000
}EEEE	chr19:13054269-13054475(+)$1	206	185	190	15.0000
:::::	chr7:100225316-100225541(-)$1	225	1	6	15.0000
!!ddd	chr4:88293819-88294067(-)$1	248	117	122	15.0000
333gg	chr19:47280169-47280390(-)$1	221	137	142	15.0000
ccc[c	chr1:55509553-55509807(+)$1	254	86	91	15.0000
##ddd	chr18:28650670-28650917(-)$1	247	104	109	15.0000
dddd4	chr22:36657608-36657869(+)$1	261	102	107	15.0000
mmmmb	chr19:49414305-49414521(+)$1	216	124	129	15.0000
f333b	chr17:76968955-76969212(-)$1	257	55	60	15.0000
ooobb	chr2:48026737-48026982(+)$1	245	224	229	15.0000
HLLLG	chr2:188332379-188332685(-)$1	306	10	15	15.0000
ccc!!	chr1:113650130-113650402(+)$1	272	77	82	15.0000
mbbee	chr19:45375191-45375438(+)$1	247	22	27	15.0000
IIIII	chr12:56120852-56121084(-)$1	232	7	12	15.0000
ffrrr	chr3:14182991-14183233(+)$1	242	111	116	15.0000
::III	chr13:30088559-30088814(-)$1	255	167	172	15.0000
dd333	chr7:107545797-107546046(+)$1	249	139	144	15.0000
ggHHH	chr6:30690601-30690843(+)$1	242	117	122	15.0000
ffbb2	chr12:74932022-74932274(+)$1	252	211	216	15.0000
eee[b	chr9:33135109-33135391(-)$1	282	158	163	15.0000
=====	chr22:39141588-39141918(-)$1	330	155	160	15.0000
fffff	chr19:47280131-47280334(-)$1	203	81	86	15.0000
::::G	chr19:47285666-47285905(-)$1	239	133	138	15.0000

#DB
.))))	chr1:226253374-226253610(+)$1	1	171	176	15.0000
(((.(	chr9:102747148-102747454(-)$1	1	106	111	15.0000
(((((	chr8:11708273-11708520(-)$1	1	128	133	15.0000
((((.	chr1:160319283-160319559(+)$1	1	18	23	15.0000
(((((	chr13:46722445-46722661(-)$1	1	141	146	15.0000
...((	chr1:155160566-155160888(-)$1	1	152	157	15.0000
...((	chrX:77110902-77111188(-)$1	1	35	40	15.0000
((((.	chr15:64452267-64452490(-)$1	1	18	23	15.0000
...((	chr10:73578273-73578476(-)$1	1	164	169	15.0000
.))))	chr19:47285646-47285866(-)$1	1	94	99	15.0000
(((((	chr11:62397260-62397481(-)$1	1	111	116	15.0000
)))).	chr1:43393292-43393536(-)$1	1	128	133	15.0000
.((((	chr7:65439197-65439475(-)$1	1	34	39	15.0000
..(..	chr13:30091212-30091537(-)$1	1	306	311	15.0000
((((.	chr1:145439975-145440196(+)$1	1	95	100	15.0000
)).))	chr11:118968113-118968340(-)$1	1	205	210	15.0000
.....	chr18:3277150-3277422(+)$1	1	172	177	15.0000
)((((	chr11:61070078-61070322(-)$1	1	35	40	15.0000
)))))	chr6:7301526-7301775(-)$1	1	166	171	15.0000
(((((	chr1:12014822-12015050(+)$1	1	56	61	15.0000
(((((	chr3:127788276-127788546(+)$1	1	95	100	15.0000
(((((	chr6:43479934-43480154(-)$1	1	104	109	15.0000
.))))	chr11:118967770-118968051(-)$1	1	183	188	15.0000
.))))	chr11:9304991-9305241(-)$1	1	178	183	15.0000
(((((	chr8:22885792-22886043(-)$1	1	63	68	15.0000
.))).	chr16:74537356-74537656(-)$1	1	57	62	15.0000
(.(((	chr1:31206638-31206864(-)$1	1	104	109	15.0000
(((((	chr11:62652954-62653169(+)$1	1	116	121	15.0000
(((..	chr1:111440334-111440548(+)$1	1	136	141	15.0000
((((.	chr11:6637594-6637834(-)$1	1	35	40	15.0000
(((..	chr12:125294658-125294936(-)$1	1	175	180	15.0000
((.((	chr18:29115193-29115469(+)$1	1	114	119	15.0000
.))))	chr19:13054269-13054475(+)$1	1	185	190	15.0000
.....	chr7:100225316-100225541(-)$1	1	1	6	15.0000
..(((	chr4:88293819-88294067(-)$1	1	117	122	15.0000
...))	chr19:47280169-47280390(-)$1	1	137	142	15.0000
(((.(	chr1:55509553-55509807(+)$1	1	86	91	15.0000
..(((	chr18:28650670-28650917(-)$1	1	104	109	15.0000
)))).	chr22:36657608-36657869(+)$1	1	102	107	15.0000
....)	chr19:49414305-49414521(+)$1	1	124	129	15.0000
)...)	chr17:76968955-76969212(-)$1	1	55	60	15.0000
...))	chr2:48026737-48026982(+)$1	1	224	229	15.0000
(...(	chr2:188332379-188332685(-)$1	1	10	15	15.0000
(((..	chr1:113650130-113650402(+)$1	1	77	82	15.0000
.))((	chr19:45375191-45375438(+)$1	1	22	27	15.0000
(((((	chr12:56120852-56121084(-)$1	1	7	12	15.0000
((...	chr3:14182991-14183233(+)$1	1	111	116	15.0000
..)))	chr13:30088559-30088814(-)$1	1	167	172	15.0000
))...	chr7:107545797-107546046(+)$1	1	139	144	15.0000
)))))	chr6:30690601-30690843(+)$1	1	117	122	15.0000
)))).	chr12:74932022-74932274(+)$1	1	211	216	15.0000
(((.(	chr9:33135109-33135391(-)$1	1	158	163	15.0000
(((((	chr22:39141588-39141918(-)$1	1	155	160	15.0000
(((((	chr19:47280131-47280334(-)$1	1	81	86	15.0000
....)	chr19:47285666-47285905(-)$1	1	133	138	15.0000

#PSSM
U : 1.00	
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	825.0000000000001
#seq	55
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_CDS_m2_run2.nuc.txt

#NT
UCU	chr18:77804175-77804429(+)$1	254	19	22	9.0000
UCU	chr5:154191056-154191367(+)$1	311	5	8	9.0000
UCU	chr6:31730831-31731095(+)$1	264	15	18	9.0000
UCU	chr11:61179089-61179362(-)$1	273	46	49	9.0000
UCU	chr7:23387058-23387320(-)$1	262	23	26	9.0000
UCU	chr21:45096082-45096394(+)$1	312	36	39	9.0000
UCU	chr20:33363914-33364212(-)$1	298	97	100	9.0000
UCU	chr16:18860399-18860670(-)$1	271	40	43	9.0000
UCU	chr18:48575549-48575809(+)$1	260	20	23	9.0000
UCU	chr11:114314554-114314824(+)$1	270	258	261	9.0000
UCU	chr6:135375602-135375899(-)$1	297	11	14	9.0000
UCU	chr2:228395801-228396060(+)$1	259	13	16	9.0000
UCU	chr12:57926656-57926958(-)$1	302	131	134	9.0000
UCU	chr15:55484692-55484981(-)$1	289	134	137	9.0000
UCU	chr10:6157145-6157400(+)$1	255	15	18	9.0000
UCU	chr11:118380700-118381035(+)$1	335	112	115	9.0000
UCU	chr22:36889516-36889787(-)$1	271	12	15	9.0000
UCU	chr3:148785866-148786130(-)$1	264	16	19	9.0000
UCU	chr16:23505439-23505732(-)$1	293	8	11	9.0000
UCU	chr22:32009388-32009672(+)$1	284	210	213	9.0000
UCU	chr11:47311741-47311992(+)$1	251	44	47	9.0000
UCU	chr15:48623663-48623907(+)$1	244	39	42	9.0000
UCU	chr2:190444482-190444741(-)$1	259	47	50	9.0000
UCU	chrX:65476055-65476330(+)$1	275	17	20	9.0000
UCU	chr11:64132824-64133131(+)$1	307	63	66	9.0000
UCU	chr11:70265859-70266133(+)$1	274	106	109	9.0000
UCU	chr2:9048600-9048865(-)$1	265	37	40	9.0000
UCU	chr21:47975887-47976174(+)$1	287	125	128	9.0000
UCU	chr13:52991942-52992282(-)$1	340	31	34	9.0000
UCU	chr19:18547535-18547806(-)$1	271	69	72	9.0000
UCU	chr1:205066308-205066556(-)$1	248	1	4	9.0000
UCU	chr3:128993710-128993964(+)$1	254	87	90	9.0000
UCU	chr2:197010441-197010756(-)$1	315	32	35	9.0000
UCU	chr20:42089212-42089458(+)$1	246	7	10	9.0000
UCU	chr21:47953920-47954182(+)$1	262	8	11	9.0000
UCU	chr1:52850072-52850330(-)$1	258	89	92	9.0000
UCU	chr6:31506391-31506658(-)$1	267	3	6	9.0000
UCU	chr21:47632795-47633061(-)$1	266	4	7	9.0000
UCU	chr2:191785788-191786110(+)$1	322	30	33	9.0000
UCU	chr10:69651204-69651539(+)$1	335	32	35	9.0000
UCU	chr6:90437401-90437652(-)$1	251	4	7	9.0000
UCU	chr19:39965230-39965536(+)$1	306	165	168	9.0000
UCU	chr2:27259233-27259466(+)$1	233	6	9	9.0000
UCU	chr11:31484514-31484887(-)$1	373	51	54	9.0000
UCU	chr5:154214051-154214311(-)$1	260	26	29	9.0000
UCU	chr10:27822735-27823071(+)$1	336	76	79	9.0000
UCU	chr16:57794482-57794765(-)$1	283	4	7	9.0000
UCU	chr6:15511493-15511777(+)$1	284	0	3	9.0000
UCU	chr8:68066257-68066509(+)$1	252	21	24	9.0000
UCU	chr22:21997022-21997264(+)$1	242	55	58	9.0000
UCU	chr11:95523801-95524058(+)$1	257	73	76	9.0000
UCU	chr19:10794545-10794820(+)$1	275	32	35	9.0000
UCU	chr19:47228433-47228701(-)$1	268	8	11	9.0000
UCU	chr7:100479118-100479402(+)$1	284	15	18	9.0000
UCU	chr1:155701092-155701349(+)$1	257	4	7	9.0000
UCU	chr9:95061020-95061290(-)$1	270	26	29	9.0000
UCU	chr17:71199818-71200117(+)$1	299	91	94	9.0000
UCU	chr11:118899781-118900046(-)$1	265	4	7	9.0000
UCU	chr12:57106394-57106681(-)$1	287	144	147	9.0000
UCU	chr17:79873152-79873429(-)$1	277	8	11	9.0000
UCU	chr16:1820783-1821041(-)$1	258	141	144	9.0000
UCU	chr1:40688276-40688513(+)$1	237	13	16	9.0000
UCU	chr2:97274069-97274365(-)$1	296	27	30	9.0000
UCU	chr2:181848708-181849024(+)$1	316	12	15	9.0000
UCU	chr17:80394512-80394786(+)$1	274	19	22	9.0000
UCU	chr1:246784827-246785112(+)$1	285	30	33	9.0000
UCU	chr11:67829170-67829487(-)$1	317	9	12	9.0000
UCU	chr10:27065818-27066147(-)$1	329	126	129	9.0000
UCU	chr10:75549908-75550194(+)$1	286	64	67	9.0000
UCU	chr1:226253366-226253637(+)$1	271	44	47	9.0000
UCU	chr3:137988860-137989123(+)$1	263	166	169	9.0000
UCU	chr15:90129032-90129360(+)$1	328	28	31	9.0000
UCU	chr14:105932954-105933211(+)$1	257	54	57	9.0000
UCU	chr22:32000826-32001074(+)$1	248	9	12	9.0000
UCU	chr17:27207752-27208005(-)$1	253	112	115	9.0000
UCU	chr4:17832631-17832849(+)$1	218	118	121	9.0000
UCU	chr1:29063556-29063848(+)$1	292	12	15	9.0000
UCU	chr9:140323187-140323451(+)$1	264	186	189	9.0000
UCU	chrX:117727157-117727522(+)$1	365	151	154	9.0000
UCU	chr4:76894216-76894573(-)$1	357	13	16	9.0000
UCU	chr17:59870778-59871067(-)$1	289	1	4	9.0000
UCU	chr1:109235382-109235630(+)$1	248	57	60	9.0000
UCU	chr9:96312829-96313115(+)$1	286	14	17	9.0000
UCU	chr15:28446439-28446716(-)$1	277	8	11	9.0000
UCU	chr12:56364928-56365170(+)$1	242	4	7	9.0000
UCU	chr10:103799625-103799881(-)$1	256	1	4	9.0000
UCU	chr16:1902953-1903250(-)$1	297	181	184	9.0000
UCU	chr17:33430166-33430482(-)$1	316	63	66	9.0000
UCU	chr1:247053101-247053373(-)$1	272	7	10	9.0000
UCU	chr15:72848090-72848388(+)$1	298	92	95	9.0000
ucu	chr9:127305873-127306220(-)$1	347	15	18	9.0000
UCU	chr17:26910522-26910803(-)$1	281	6	9	9.0000
UCU	chr5:169720180-169720460(-)$1	280	7	10	9.0000
UCU	chr8:42260873-42261122(+)$1	249	97	100	9.0000
UCU	chr2:113410324-113410583(+)$1	259	21	24	9.0000
UCU	chr14:69585726-69586016(-)$1	290	49	52	9.0000
UCU	chr13:111279760-111280056(+)$1	296	18	21	9.0000

#otherMatches

#Struct PSSM
[a[	chr10:122612024-122612286(+)$1	262	83	86	9.0000
fff	chr18:77804175-77804429(+)$1	254	19	22	9.0000
FFF	chr5:154191056-154191367(+)$1	311	5	8	9.0000
[bb	chr6:31730831-31731095(+)$1	264	15	18	9.0000
{DD	chr11:61179089-61179362(-)$1	273	46	49	9.0000
{DD	chr7:23387058-23387320(-)$1	262	23	26	9.0000
:::	chr21:45096082-45096394(+)$1	312	36	39	9.0000
ii3	chr20:33363914-33364212(-)$1	298	97	100	9.0000
LEE	chr16:18860399-18860670(-)$1	271	40	43	9.0000
ma3	chr18:48575549-48575809(+)$1	260	20	23	9.0000
CC}	chr11:114314554-114314824(+)$1	270	258	261	9.0000
MBB	chr6:135375602-135375899(-)$1	297	11	14	9.0000
eee	chr2:228395801-228396060(+)$1	259	13	16	9.0000
eee	chr12:57926656-57926958(-)$1	302	131	134	9.0000
##f	chr15:55484692-55484981(-)$1	289	134	137	9.0000
hhh	chr10:6157145-6157400(+)$1	255	15	18	9.0000
bb[	chr11:118380700-118381035(+)$1	335	112	115	9.0000
ccc	chr22:36889516-36889787(-)$1	271	12	15	9.0000
'''	chr3:148785866-148786130(-)$1	264	16	19	9.0000
[bb	chr16:23505439-23505732(-)$1	293	8	11	9.0000
iii	chr22:32009388-32009672(+)$1	284	210	213	9.0000
DKK	chr11:47311741-47311992(+)$1	251	44	47	9.0000
qdd	chr15:48623663-48623907(+)$1	244	39	42	9.0000
:::	chr2:190444482-190444741(-)$1	259	47	50	9.0000
EEE	chrX:65476055-65476330(+)$1	275	17	20	9.0000
GGG	chr11:64132824-64133131(+)$1	307	63	66	9.0000
d]i	chr11:70265859-70266133(+)$1	274	106	109	9.0000
c[c	chr2:9048600-9048865(-)$1	265	37	40	9.0000
3ff	chr21:47975887-47976174(+)$1	287	125	128	9.0000
qqq	chr13:52991942-52992282(-)$1	340	31	34	9.0000
fff	chr19:18547535-18547806(-)$1	271	69	72	9.0000
DDD	chr1:205066308-205066556(-)$1	248	1	4	9.0000
bbd	chr3:128993710-128993964(+)$1	254	87	90	9.0000
fff	chr2:197010441-197010756(-)$1	315	32	35	9.0000
!ee	chr20:42089212-42089458(+)$1	246	7	10	9.0000
FFF	chr21:47953920-47954182(+)$1	262	8	11	9.0000
ggg	chr1:52850072-52850330(-)$1	258	89	92	9.0000
:::	chr6:31506391-31506658(-)$1	267	3	6	9.0000
FF:	chr21:47632795-47633061(-)$1	266	4	7	9.0000
vvv	chr2:191785788-191786110(+)$1	322	30	33	9.0000
ddd	chr10:69651204-69651539(+)$1	335	32	35	9.0000
ooo	chr6:90437401-90437652(-)$1	251	4	7	9.0000
]bb	chr19:39965230-39965536(+)$1	306	165	168	9.0000
D{D	chr2:27259233-27259466(+)$1	233	6	9	9.0000
KKD	chr11:31484514-31484887(-)$1	373	51	54	9.0000
&gg	chr5:154214051-154214311(-)$1	260	26	29	9.0000
FF:	chr10:27822735-27823071(+)$1	336	76	79	9.0000
KGG	chr16:57794482-57794765(-)$1	283	4	7	9.0000
:::	chr6:15511493-15511777(+)$1	284	0	3	9.0000
eee	chr8:68066257-68066509(+)$1	252	21	24	9.0000
qqq	chr22:21997022-21997264(+)$1	242	55	58	9.0000
ddd	chr11:95523801-95524058(+)$1	257	73	76	9.0000
eee	chr19:10794545-10794820(+)$1	275	32	35	9.0000
DLL	chr19:47228433-47228701(-)$1	268	8	11	9.0000
:::	chr7:100479118-100479402(+)$1	284	15	18	9.0000
::F	chr1:155701092-155701349(+)$1	257	4	7	9.0000
ggg	chr9:95061020-95061290(-)$1	270	26	29	9.0000
ddd	chr17:71199818-71200117(+)$1	299	91	94	9.0000
{EE	chr11:118899781-118900046(-)$1	265	4	7	9.0000
EEE	chr12:57106394-57106681(-)$1	287	144	147	9.0000
[cc	chr17:79873152-79873429(-)$1	277	8	11	9.0000
bb]	chr16:1820783-1821041(-)$1	258	141	144	9.0000
""d	chr1:40688276-40688513(+)$1	237	13	16	9.0000
C{D	chr2:97274069-97274365(-)$1	296	27	30	9.0000
EKK	chr2:181848708-181849024(+)$1	316	12	15	9.0000
eee	chr17:80394512-80394786(+)$1	274	19	22	9.0000
fff	chr1:246784827-246785112(+)$1	285	30	33	9.0000
KDD	chr11:67829170-67829487(-)$1	317	9	12	9.0000
fff	chr10:27065818-27066147(-)$1	329	126	129	9.0000
444	chr10:75549908-75550194(+)$1	286	64	67	9.0000
iii	chr1:226253366-226253637(+)$1	271	44	47	9.0000
d22	chr3:137988860-137989123(+)$1	263	166	169	9.0000
cqq	chr15:90129032-90129360(+)$1	328	28	31	9.0000
:::	chr14:105932954-105933211(+)$1	257	54	57	9.0000
G:H	chr22:32000826-32001074(+)$1	248	9	12	9.0000
eee	chr17:27207752-27208005(-)$1	253	112	115	9.0000
iim	chr4:17832631-17832849(+)$1	218	118	121	9.0000
ooo	chr1:29063556-29063848(+)$1	292	12	15	9.0000
ddd	chr9:140323187-140323451(+)$1	264	186	189	9.0000
===	chrX:117727157-117727522(+)$1	365	151	154	9.0000
:::	chr4:76894216-76894573(-)$1	357	13	16	9.0000
ddd	chr17:59870778-59871067(-)$1	289	1	4	9.0000
eee	chr1:109235382-109235630(+)$1	248	57	60	9.0000
hhh	chr9:96312829-96313115(+)$1	286	14	17	9.0000
DDD	chr15:28446439-28446716(-)$1	277	8	11	9.0000
:::	chr12:56364928-56365170(+)$1	242	4	7	9.0000
ggg	chr10:103799625-103799881(-)$1	256	1	4	9.0000
c]f	chr16:1902953-1903250(-)$1	297	181	184	9.0000
ppp	chr17:33430166-33430482(-)$1	316	63	66	9.0000
::C	chr1:247053101-247053373(-)$1	272	7	10	9.0000
QQJ	chr15:72848090-72848388(+)$1	298	92	95	9.0000
ttt	chr9:127305873-127306220(-)$1	347	15	18	9.0000
ddd	chr17:26910522-26910803(-)$1	281	6	9	9.0000
JJJ	chr5:169720180-169720460(-)$1	280	7	10	9.0000
fff	chr8:42260873-42261122(+)$1	249	97	100	9.0000
sss	chr2:113410324-113410583(+)$1	259	21	24	9.0000
ggg	chr14:69585726-69586016(-)$1	290	49	52	9.0000
:ee	chr13:111279760-111280056(+)$1	296	18	21	9.0000

#DB
.(.	chr10:122612024-122612286(+)$1	1	83	86	9.0000
(((	chr18:77804175-77804429(+)$1	1	19	22	9.0000
(((	chr5:154191056-154191367(+)$1	1	5	8	9.0000
.((	chr6:31730831-31731095(+)$1	1	15	18	9.0000
.((	chr11:61179089-61179362(-)$1	1	46	49	9.0000
.((	chr7:23387058-23387320(-)$1	1	23	26	9.0000
...	chr21:45096082-45096394(+)$1	1	36	39	9.0000
)).	chr20:33363914-33364212(-)$1	1	97	100	9.0000
.((	chr16:18860399-18860670(-)$1	1	40	43	9.0000
.).	chr18:48575549-48575809(+)$1	1	20	23	9.0000
)).	chr11:114314554-114314824(+)$1	1	258	261	9.0000
.((	chr6:135375602-135375899(-)$1	1	11	14	9.0000
(((	chr2:228395801-228396060(+)$1	1	13	16	9.0000
)))	chr12:57926656-57926958(-)$1	1	131	134	9.0000
..(	chr15:55484692-55484981(-)$1	1	134	137	9.0000
(((	chr10:6157145-6157400(+)$1	1	15	18	9.0000
((.	chr11:118380700-118381035(+)$1	1	112	115	9.0000
(((	chr22:36889516-36889787(-)$1	1	12	15	9.0000
...	chr3:148785866-148786130(-)$1	1	16	19	9.0000
.((	chr16:23505439-23505732(-)$1	1	8	11	9.0000
)))	chr22:32009388-32009672(+)$1	1	210	213	9.0000
(..	chr11:47311741-47311992(+)$1	1	44	47	9.0000
.))	chr15:48623663-48623907(+)$1	1	39	42	9.0000
...	chr2:190444482-190444741(-)$1	1	47	50	9.0000
(((	chrX:65476055-65476330(+)$1	1	17	20	9.0000
(((	chr11:64132824-64133131(+)$1	1	63	66	9.0000
).)	chr11:70265859-70266133(+)$1	1	106	109	9.0000
(.(	chr2:9048600-9048865(-)$1	1	37	40	9.0000
.))	chr21:47975887-47976174(+)$1	1	125	128	9.0000
...	chr13:52991942-52992282(-)$1	1	31	34	9.0000
(((	chr19:18547535-18547806(-)$1	1	69	72	9.0000
(((	chr1:205066308-205066556(-)$1	1	1	4	9.0000
))(	chr3:128993710-128993964(+)$1	1	87	90	9.0000
(((	chr2:197010441-197010756(-)$1	1	32	35	9.0000
.((	chr20:42089212-42089458(+)$1	1	7	10	9.0000
(((	chr21:47953920-47954182(+)$1	1	8	11	9.0000
(((	chr1:52850072-52850330(-)$1	1	89	92	9.0000
...	chr6:31506391-31506658(-)$1	1	3	6	9.0000
((.	chr21:47632795-47633061(-)$1	1	4	7	9.0000
...	chr2:191785788-191786110(+)$1	1	30	33	9.0000
(((	chr10:69651204-69651539(+)$1	1	32	35	9.0000
...	chr6:90437401-90437652(-)$1	1	4	7	9.0000
.))	chr19:39965230-39965536(+)$1	1	165	168	9.0000
(.(	chr2:27259233-27259466(+)$1	1	6	9	9.0000
..(	chr11:31484514-31484887(-)$1	1	51	54	9.0000
.((	chr5:154214051-154214311(-)$1	1	26	29	9.0000
((.	chr10:27822735-27823071(+)$1	1	76	79	9.0000
.((	chr16:57794482-57794765(-)$1	1	4	7	9.0000
...	chr6:15511493-15511777(+)$1	1	0	3	9.0000
(((	chr8:68066257-68066509(+)$1	1	21	24	9.0000
...	chr22:21997022-21997264(+)$1	1	55	58	9.0000
)))	chr11:95523801-95524058(+)$1	1	73	76	9.0000
)))	chr19:10794545-10794820(+)$1	1	32	35	9.0000
(..	chr19:47228433-47228701(-)$1	1	8	11	9.0000
...	chr7:100479118-100479402(+)$1	1	15	18	9.0000
..(	chr1:155701092-155701349(+)$1	1	4	7	9.0000
(((	chr9:95061020-95061290(-)$1	1	26	29	9.0000
)))	chr17:71199818-71200117(+)$1	1	91	94	9.0000
.((	chr11:118899781-118900046(-)$1	1	4	7	9.0000
)))	chr12:57106394-57106681(-)$1	1	144	147	9.0000
.((	chr17:79873152-79873429(-)$1	1	8	11	9.0000
)).	chr16:1820783-1821041(-)$1	1	141	144	9.0000
..(	chr1:40688276-40688513(+)$1	1	13	16	9.0000
(.(	chr2:97274069-97274365(-)$1	1	27	30	9.0000
(..	chr2:181848708-181849024(+)$1	1	12	15	9.0000
(((	chr17:80394512-80394786(+)$1	1	19	22	9.0000
(((	chr1:246784827-246785112(+)$1	1	30	33	9.0000
.((	chr11:67829170-67829487(-)$1	1	9	12	9.0000
)))	chr10:27065818-27066147(-)$1	1	126	129	9.0000
...	chr10:75549908-75550194(+)$1	1	64	67	9.0000
)))	chr1:226253366-226253637(+)$1	1	44	47	9.0000
)..	chr3:137988860-137989123(+)$1	1	166	169	9.0000
(..	chr15:90129032-90129360(+)$1	1	28	31	9.0000
...	chr14:105932954-105933211(+)$1	1	54	57	9.0000
(.(	chr22:32000826-32001074(+)$1	1	9	12	9.0000
)))	chr17:27207752-27208005(-)$1	1	112	115	9.0000
((.	chr4:17832631-17832849(+)$1	1	118	121	9.0000
...	chr1:29063556-29063848(+)$1	1	12	15	9.0000
(((	chr9:140323187-140323451(+)$1	1	186	189	9.0000
)))	chrX:117727157-117727522(+)$1	1	151	154	9.0000
...	chr4:76894216-76894573(-)$1	1	13	16	9.0000
(((	chr17:59870778-59871067(-)$1	1	1	4	9.0000
(((	chr1:109235382-109235630(+)$1	1	57	60	9.0000
(((	chr9:96312829-96313115(+)$1	1	14	17	9.0000
(((	chr15:28446439-28446716(-)$1	1	8	11	9.0000
...	chr12:56364928-56365170(+)$1	1	4	7	9.0000
(((	chr10:103799625-103799881(-)$1	1	1	4	9.0000
).)	chr16:1902953-1903250(-)$1	1	181	184	9.0000
...	chr17:33430166-33430482(-)$1	1	63	66	9.0000
..(	chr1:247053101-247053373(-)$1	1	7	10	9.0000
..(	chr15:72848090-72848388(+)$1	1	92	95	9.0000
...	chr9:127305873-127306220(-)$1	1	15	18	9.0000
(((	chr17:26910522-26910803(-)$1	1	6	9	9.0000
(((	chr5:169720180-169720460(-)$1	1	7	10	9.0000
)))	chr8:42260873-42261122(+)$1	1	97	100	9.0000
...	chr2:113410324-113410583(+)$1	1	21	24	9.0000
(((	chr14:69585726-69586016(-)$1	1	49	52	9.0000
.((	chr13:111279760-111280056(+)$1	1	18	21	9.0000

#PSSM
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_CDS_m1_run1.nuc.txt

#NT
GAAGA	chr22:24455590-24455807(+)$1	217	33	38	14.9999
GAAGA	chr7:158662474-158662697(+)$1	223	72	77	14.9999
GAAGA	chr9:125898307-125898561(-)$1	254	226	231	14.9999
GAAGA	chr17:55917169-55917396(-)$1	227	166	171	14.9999
GAAGA	chr16:84779119-84779361(+)$1	242	189	194	14.9999
GAAGA	chr5:98232797-98233015(-)$1	218	23	28	14.9999
GAAGA	chr20:34078456-34078715(+)$1	259	135	140	14.9999
GAAGA	chr4:186231702-186232078(+)$1	376	135	140	14.9999
gaaga	chr2:29169381-29169687(+)$1	306	96	101	14.9999
gaaga	chr11:129991429-129991695(+)$1	266	205	210	14.9999
GAAGA	chr1:150418662-150418955(+)$1	293	52	57	14.9999
GAAGA	chr8:42829144-42829394(+)$1	250	144	149	14.9999
GAAGA	chr3:183435366-183435607(+)$1	241	91	96	14.9999
GAAGA	chr2:48045841-48046086(-)$1	245	122	127	14.9999
GAAGA	chr16:70165975-70166280(+)$1	305	96	101	14.9999
GAAGA	chr20:42157194-42157476(+)$1	282	43	48	14.9999
gaaga	chr2:99980117-99980354(+)$1	237	12	17	14.9999
GAAGA	chr20:47839713-47839991(+)$1	278	163	168	14.9999
GAAGA	chr5:72286469-72286776(+)$1	307	75	80	14.9999
GAAGA	chr2:95818804-95819114(-)$1	310	2	7	14.9999
GAAGA	chr10:103868821-103869034(-)$1	213	140	145	14.9999
GAAGA	chr12:131311641-131311865(-)$1	224	58	63	14.9999
GAAGA	chr1:186296631-186296846(-)$1	215	84	89	14.9999
GAAGA	chr3:50095195-50095526(+)$1	331	86	91	14.9999
gaaga	chr17:65899806-65900056(+)$1	250	126	131	14.9999
GAAGA	chr14:35331149-35331407(-)$1	258	120	125	14.9999
GAAGA	chr5:145557101-145557317(-)$1	216	121	126	14.9999
GAAGA	chr1:235387950-235388190(-)$1	240	66	71	14.9999
GAAGA	chr5:70806186-70806475(+)$1	289	6	11	14.9999
GAAGA	chr19:45560984-45561235(+)$1	251	32	37	14.9999
GAAGA	chr19:45572264-45572482(+)$1	218	201	206	14.9999
GAAGA	chr16:30722854-30723126(+)$1	272	105	110	14.9999
gaaga	chr20:7962965-7963272(-)$1	307	81	86	14.9999
GAAGA	chr11:812674-812879(+)$1	205	92	97	14.9999
gaaga	chr11:57095117-57095412(-)$1	295	58	63	14.9999
GAAGA	chrX:41205657-41205867(+)$1	210	169	174	14.9999
GAAGA	chr4:79799882-79800146(+)$1	264	47	52	14.9999
gaaga	chr6:44218156-44218363(+)$1	207	17	22	14.9999
GAAGA	chr8:106646373-106646675(+)$1	302	99	104	14.9999
GAAGA	chr14:50267037-50267302(-)$1	265	25	30	14.9999
gaaga	chr18:9517089-9517342(+)$1	253	6	11	14.9999
GAAGA	chr20:34312859-34313064(-)$1	205	78	83	14.9999
GAAGA	chr1:24989099-24989332(+)$1	233	74	79	14.9999
GAAGA	chr1:71546535-71546800(-)$1	265	82	87	14.9999
GAAGA	chr12:76449714-76449948(-)$1	234	34	39	14.9999
GAAGA	chr6:111346521-111346799(+)$1	278	89	94	14.9999
GAAGA	chr8:41547953-41548199(-)$1	246	135	140	14.9999
GAAGA	chr1:243589666-243589945(+)$1	279	127	132	14.9999
GAAGA	chr9:100774617-100774828(+)$1	211	85	90	14.9999
GAAGA	chr11:3022301-3022579(-)$1	278	160	165	14.9999
GAAGA	chr7:101758387-101758661(+)$1	274	149	154	14.9999
GAAGA	chr15:93480734-93480954(+)$1	220	38	43	14.9999
GAAGA	chr2:219132116-219132358(-)$1	242	81	86	14.9999
GAAGA	chr1:156917016-156917292(-)$1	276	120	125	14.9999
gaaga	chrX:53439857-53440097(-)$1	240	188	193	14.9999
GAAGA	chr17:48823812-48824093(+)$1	281	104	109	14.9999
GAAGA	chr17:65943741-65943951(+)$1	210	169	174	14.9999
GAAGA	chr17:76798364-76798606(-)$1	242	26	31	14.9999
GAAGA	chr7:91728944-91729205(+)$1	261	152	157	14.9999
GAAGA	chr20:1444872-1445102(-)$1	230	67	72	14.9999
GAAGA	chr12:72233450-72233691(+)$1	241	159	164	14.9999
GAAGA	chr1:245021930-245022135(-)$1	205	54	59	14.9999
GAAGA	chr21:34904607-34904863(-)$1	256	177	182	14.9999
GAAGA	chr1:166838940-166839193(-)$1	253	135	140	14.9999
GAAGA	chr16:21854702-21855005(-)$1	303	281	286	14.9999
GAAGA	chr12:6879241-6879484(+)$1	243	86	91	14.9999
GAAGA	chr2:15735183-15735421(+)$1	238	120	125	14.9999
GAAGA	chr1:22032125-22032354(-)$1	229	121	126	14.9999
GAAGA	chr1:39908389-39908627(+)$1	238	220	225	14.9999
GAAGA	chr17:27425758-27426001(-)$1	243	43	48	14.9999
GAAGA	chr17:65343392-65343661(-)$1	269	195	200	14.9999

#otherMatches

#Struct PSSM
c!!bb	chr6:135516896-135517200(+)$1	304	136	141	14.9999
iiiii	chr22:24455590-24455807(+)$1	217	33	38	14.9999
ggggH	chr7:158662474-158662697(+)$1	223	72	77	14.9999
:::::	chr9:125898307-125898561(-)$1	254	226	231	14.9999
A////	chr17:55917169-55917396(-)$1	227	166	171	14.9999
"""ff	chr16:84779119-84779361(+)$1	242	189	194	14.9999
[a'''	chr5:98232797-98233015(-)$1	218	23	28	14.9999
cuuuu	chr20:34078456-34078715(+)$1	259	135	140	14.9999
D}EEE	chr4:186231702-186232078(+)$1	376	135	140	14.9999
eeee]	chr2:29169381-29169687(+)$1	306	96	101	14.9999
777dd	chr11:129991429-129991695(+)$1	266	205	210	14.9999
eeemm	chr1:150418662-150418955(+)$1	293	52	57	14.9999
ccc:F	chr8:42829144-42829394(+)$1	250	144	149	14.9999
'''''	chr3:183435366-183435607(+)$1	241	91	96	14.9999
fff:c	chr2:48045841-48046086(-)$1	245	122	127	14.9999
c]ddd	chr16:70165975-70166280(+)$1	305	96	101	14.9999
^^^^^	chr20:42157194-42157476(+)$1	282	43	48	14.9999
:::::	chr2:99980117-99980354(+)$1	237	12	17	14.9999
ffff2	chr20:47839713-47839991(+)$1	278	163	168	14.9999
MMMMD	chr5:72286469-72286776(+)$1	307	75	80	14.9999
:::GG	chr2:95818804-95819114(-)$1	310	2	7	14.9999
f]ddd	chr10:103868821-103869034(-)$1	213	140	145	14.9999
GGGGG	chr12:131311641-131311865(-)$1	224	58	63	14.9999
hh:::	chr1:186296631-186296846(-)$1	215	84	89	14.9999
d::::	chr3:50095195-50095526(+)$1	331	86	91	14.9999
]aHHH	chr17:65899806-65900056(+)$1	250	126	131	14.9999
ff:GG	chr14:35331149-35331407(-)$1	258	120	125	14.9999
[bbnn	chr5:145557101-145557317(-)$1	216	121	126	14.9999
fffff	chr1:235387950-235388190(-)$1	240	66	71	14.9999
:::::	chr5:70806186-70806475(+)$1	289	6	11	14.9999
ddddm	chr19:45560984-45561235(+)$1	251	32	37	14.9999
22ddd	chr19:45572264-45572482(+)$1	218	201	206	14.9999
[abb"	chr16:30722854-30723126(+)$1	272	105	110	14.9999
:::::	chr20:7962965-7963272(-)$1	307	81	86	14.9999
==:cc	chr11:812674-812879(+)$1	205	92	97	14.9999
mmmma	chr11:57095117-57095412(-)$1	295	58	63	14.9999
fffff	chrX:41205657-41205867(+)$1	210	169	174	14.9999
tttcc	chr4:79799882-79800146(+)$1	264	47	52	14.9999
:::::	chr6:44218156-44218363(+)$1	207	17	22	14.9999
eeeee	chr8:106646373-106646675(+)$1	302	99	104	14.9999
:::EE	chr14:50267037-50267302(-)$1	265	25	30	14.9999
:::::	chr18:9517089-9517342(+)$1	253	6	11	14.9999
d22hh	chr20:34312859-34313064(-)$1	205	78	83	14.9999
bb]bb	chr1:24989099-24989332(+)$1	233	74	79	14.9999
emmmm	chr1:71546535-71546800(-)$1	265	82	87	14.9999
HHHHH	chr12:76449714-76449948(-)$1	234	34	39	14.9999
:::::	chr6:111346521-111346799(+)$1	278	89	94	14.9999
dddd"	chr8:41547953-41548199(-)$1	246	135	140	14.9999
555gg	chr1:243589666-243589945(+)$1	279	127	132	14.9999
hhhh:	chr9:100774617-100774828(+)$1	211	85	90	14.9999
nnnnn	chr11:3022301-3022579(-)$1	278	160	165	14.9999
dd[bb	chr7:101758387-101758661(+)$1	274	149	154	14.9999
444cc	chr15:93480734-93480954(+)$1	220	38	43	14.9999
uuuuu	chr2:219132116-219132358(-)$1	242	81	86	14.9999
ddddF	chr1:156917016-156917292(-)$1	276	120	125	14.9999
DDDDZ	chrX:53439857-53440097(-)$1	240	188	193	14.9999
]dddd	chr17:48823812-48824093(+)$1	281	104	109	14.9999
qqqqq	chr17:65943741-65943951(+)$1	210	169	174	14.9999
:::::	chr17:76798364-76798606(-)$1	242	26	31	14.9999
ff:::	chr7:91728944-91729205(+)$1	261	152	157	14.9999
6666b	chr20:1444872-1445102(-)$1	230	67	72	14.9999
eeeee	chr12:72233450-72233691(+)$1	241	159	164	14.9999
DDLLL	chr1:245021930-245022135(-)$1	205	54	59	14.9999
fffff	chr21:34904607-34904863(-)$1	256	177	182	14.9999
ccc33	chr1:166838940-166839193(-)$1	253	135	140	14.9999
GG___	chr16:21854702-21855005(-)$1	303	281	286	14.9999
ee:::	chr12:6879241-6879484(+)$1	243	86	91	14.9999
ffff:	chr2:15735183-15735421(+)$1	238	120	125	14.9999
hhhhh	chr1:22032125-22032354(-)$1	229	121	126	14.9999
BB}FF	chr1:39908389-39908627(+)$1	238	220	225	14.9999
eeee!	chr17:27425758-27426001(-)$1	243	43	48	14.9999
bb]bb	chr17:65343392-65343661(-)$1	269	195	200	14.9999

#DB
(..((	chr6:135516896-135517200(+)$1	1	136	141	14.9999
)))))	chr22:24455590-24455807(+)$1	1	33	38	14.9999
))))(	chr7:158662474-158662697(+)$1	1	72	77	14.9999
.....	chr9:125898307-125898561(-)$1	1	226	231	14.9999
)....	chr17:55917169-55917396(-)$1	1	166	171	14.9999
...((	chr16:84779119-84779361(+)$1	1	189	194	14.9999
.(...	chr5:98232797-98233015(-)$1	1	23	28	14.9999
(....	chr20:34078456-34078715(+)$1	1	135	140	14.9999
).)))	chr4:186231702-186232078(+)$1	1	135	140	14.9999
)))).	chr2:29169381-29169687(+)$1	1	96	101	14.9999
...))	chr11:129991429-129991695(+)$1	1	205	210	14.9999
(((..	chr1:150418662-150418955(+)$1	1	52	57	14.9999
))).)	chr8:42829144-42829394(+)$1	1	144	149	14.9999
.....	chr3:183435366-183435607(+)$1	1	91	96	14.9999
))).(	chr2:48045841-48046086(-)$1	1	122	127	14.9999
).)))	chr16:70165975-70166280(+)$1	1	96	101	14.9999
.....	chr20:42157194-42157476(+)$1	1	43	48	14.9999
.....	chr2:99980117-99980354(+)$1	1	12	17	14.9999
)))).	chr20:47839713-47839991(+)$1	1	163	168	14.9999
....(	chr5:72286469-72286776(+)$1	1	75	80	14.9999
...((	chr2:95818804-95819114(-)$1	1	2	7	14.9999
).)))	chr10:103868821-103869034(-)$1	1	140	145	14.9999
(((((	chr12:131311641-131311865(-)$1	1	58	63	14.9999
))...	chr1:186296631-186296846(-)$1	1	84	89	14.9999
)....	chr3:50095195-50095526(+)$1	1	86	91	14.9999
.))))	chr17:65899806-65900056(+)$1	1	126	131	14.9999
)).))	chr14:35331149-35331407(-)$1	1	120	125	14.9999
.((..	chr5:145557101-145557317(-)$1	1	121	126	14.9999
(((((	chr1:235387950-235388190(-)$1	1	66	71	14.9999
.....	chr5:70806186-70806475(+)$1	1	6	11	14.9999
((((.	chr19:45560984-45561235(+)$1	1	32	37	14.9999
..)))	chr19:45572264-45572482(+)$1	1	201	206	14.9999
.(((.	chr16:30722854-30723126(+)$1	1	105	110	14.9999
.....	chr20:7962965-7963272(-)$1	1	81	86	14.9999
)).((	chr11:812674-812879(+)$1	1	92	97	14.9999
....)	chr11:57095117-57095412(-)$1	1	58	63	14.9999
)))))	chrX:41205657-41205867(+)$1	1	169	174	14.9999
...))	chr4:79799882-79800146(+)$1	1	47	52	14.9999
.....	chr6:44218156-44218363(+)$1	1	17	22	14.9999
)))))	chr8:106646373-106646675(+)$1	1	99	104	14.9999
...((	chr14:50267037-50267302(-)$1	1	25	30	14.9999
.....	chr18:9517089-9517342(+)$1	1	6	11	14.9999
)..))	chr20:34312859-34313064(-)$1	1	78	83	14.9999
)).))	chr1:24989099-24989332(+)$1	1	74	79	14.9999
(....	chr1:71546535-71546800(-)$1	1	82	87	14.9999
(((((	chr12:76449714-76449948(-)$1	1	34	39	14.9999
.....	chr6:111346521-111346799(+)$1	1	89	94	14.9999
((((.	chr8:41547953-41548199(-)$1	1	135	140	14.9999
...))	chr1:243589666-243589945(+)$1	1	127	132	14.9999
)))).	chr9:100774617-100774828(+)$1	1	85	90	14.9999
.....	chr11:3022301-3022579(-)$1	1	160	165	14.9999
((.((	chr7:101758387-101758661(+)$1	1	149	154	14.9999
...))	chr15:93480734-93480954(+)$1	1	38	43	14.9999
.....	chr2:219132116-219132358(-)$1	1	81	86	14.9999
)))))	chr1:156917016-156917292(-)$1	1	120	125	14.9999
)))).	chrX:53439857-53440097(-)$1	1	188	193	14.9999
.))))	chr17:48823812-48824093(+)$1	1	104	109	14.9999
.....	chr17:65943741-65943951(+)$1	1	169	174	14.9999
.....	chr17:76798364-76798606(-)$1	1	26	31	14.9999
))...	chr7:91728944-91729205(+)$1	1	152	157	14.9999
....)	chr20:1444872-1445102(-)$1	1	67	72	14.9999
(((((	chr12:72233450-72233691(+)$1	1	159	164	14.9999
((...	chr1:245021930-245022135(-)$1	1	54	59	14.9999
(((((	chr21:34904607-34904863(-)$1	1	177	182	14.9999
)))..	chr1:166838940-166839193(-)$1	1	135	140	14.9999
))...	chr16:21854702-21855005(-)$1	1	281	286	14.9999
))...	chr12:6879241-6879484(+)$1	1	86	91	14.9999
)))).	chr2:15735183-15735421(+)$1	1	120	125	14.9999
(((((	chr1:22032125-22032354(-)$1	1	121	126	14.9999
)).))	chr1:39908389-39908627(+)$1	1	220	225	14.9999
((((.	chr17:27425758-27426001(-)$1	1	43	48	14.9999
)).))	chr17:65343392-65343661(-)$1	1	195	200	14.9999

#PSSM
G : 0.87	g : 0.12	
A : 0.87	a : 0.12	
A : 0.87	a : 0.12	
G : 0.87	g : 0.12	
A : 0.87	a : 0.12	

#score	1079.9999999999995
#seq	72
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_UTR_m1_run1.nuc.txt

#NT
CUUUUUAUUU	chr11:130014465-130014727(+)$1	262	21	31	19.0566
UGUUUUCUUU	chr12:66357128-66357423(+)$1	295	224	234	17.2641
UUUUGUAUUU	chr5:42800117-42800392(-)$1	275	11	21	19.0566
UUUUUUAUUU	chr3:184052904-184053150(+)$1	246	91	101	22.6415
CUUUUUUUUU	chrX:132669701-132670005(-)$1	304	282	292	17.9245
UCUUUUAUUU	chr2:135206772-135207065(+)$1	293	94	104	18.3018
UUUGUUUUUU	chr19:1258814-1259075(+)$1	261	25	35	16.9811
UUUUGUUUUU	chr10:105360450-105360687(-)$1	237	89	99	17.9245
GUUUUUCUUU	chr4:74286819-74287063(+)$1	244	40	50	17.9245
guuuuuguuu	chr2:96850973-96851219(-)$1	246	76	86	16.8867
AUUUUUAUGU	chr5:43291024-43291289(-)$1	265	171	181	15.0943
UUUUCUUUUU	chr21:27253073-27253345(-)$1	272	10	20	18.2075
UUUUCUACUU	chr7:103112483-103112745(-)$1	262	156	166	15.4716
UUUUUUCUCU	chrX:131506498-131506847(-)$1	349	97	107	17.5471
UUUUUUAUUU	chr3:184052839-184053091(+)$1	252	156	166	22.6415
AUUUUUAUUU	chr13:113977557-113977809(+)$1	252	2	12	19.1509
UUUUCUACUU	chr7:103112445-103112647(-)$1	202	58	68	15.4716
UUUUUUAUUA	chr16:18802939-18803249(-)$1	310	67	77	18.2075
UUUUCUCUUU	chr4:74321356-74321568(+)$1	212	31	41	18.3962
CUUUUUAUUU	chr6:132269607-132269834(-)$1	227	102	112	19.0566
UUUUUUCCUU	chr17:61909579-61909883(-)$1	304	42	52	17.8301
AUUUUUAUAU	chr1:20978615-20978917(-)$1	302	206	216	14.9999
UUUUUUAUUA	chr1:43392302-43392551(-)$1	249	75	85	18.2075
UUUUUUUUUU	chr7:127231551-127231826(+)$1	275	84	94	21.5094
uauUUUAUUU	chr19:54379490-54379751(+)$1	261	60	70	18.3018
UUUUUuauau	chrX:108885675-108885917(-)$1	242	70	80	18.4905
UUUUCUAUUU	chr1:44088990-44089266(+)$1	276	265	275	19.3396
UUUUUCCUUU	chr6:119500512-119500759(-)$1	247	207	217	16.9811
UUUAUUCUUU	chr12:66359808-66360071(+)$1	263	64	74	17.0754
UUUUGUUUUU	chr4:74286766-74287005(+)$1	239	29	39	17.9245
CUUUUUAUUU	chr1:228285658-228285928(+)$1	270	214	224	19.0566
UUUUUUAUCU	chr3:145787294-145787570(-)$1	276	74	84	18.4905
aauuuuauuu	chr2:20648242-20648505(+)$1	263	79	89	14.8113
UUUUCUACUU	chr7:103112379-103112622(-)$1	243	33	43	15.4716
uuuuuuguuu	chr17:18111743-18112013(+)$1	270	65	75	20.6603
UUUUUUUUGU	chr1:55315566-55315807(-)$1	241	93	103	17.4528
UUUUUUCUUU	chr1:234742446-234742694(-)$1	248	11	21	21.6981
AUGUUUAUUU	chr16:2569993-2570292(+)$1	299	37	47	14.3396
UUUUUUUUUU	chr12:106632168-106632459(-)$1	291	75	85	21.5094
UUUUUUUUUU	chr17:4848920-4849209(-)$1	289	227	237	21.5094
UUUUUUUUUU	chr20:36033553-36033820(+)$1	267	80	90	21.5094
uuuuuuauua	chr2:36777952-36778233(+)$1	281	85	95	18.2075
UUUUUGUUUU	chr5:133291337-133291585(-)$1	248	0	10	16.7924
UUUUUUCCUU	chr17:39979280-39979529(+)$1	249	150	160	17.8301
UUUUUUGUUU	chr16:87863683-87863993(-)$1	310	42	52	20.6603
UUUUGUCUUU	chr11:64894800-64895099(-)$1	299	88	98	18.1132
UUUUUUCUUU	chr1:234742494-234742748(-)$1	254	65	75	21.6981
UUUUCUCUUU	chr4:74321305-74321556(+)$1	251	82	92	18.3962
UUUUUUACUU	chr11:62392232-62392474(-)$1	242	99	109	18.7735
UUUUUUUUUU	chr16:2820990-2821317(+)$1	327	23	33	21.5094
UCUUUUCUUU	chr6:7586604-7586866(+)$1	262	94	104	17.3584
UUUUUUAUGU	chr16:56643143-56643390(+)$1	247	177	187	18.5849

#otherMatches

#Struct PSSM
CKKBB::ddd	chr1:145441080-145441317(+)$1	237	51	61	17.1698
::::::::::	chr11:130014465-130014727(+)$1	262	21	31	19.0566
GGG:::::ii	chr12:66357128-66357423(+)$1	295	224	234	17.2641
iiiiinnnnn	chr5:42800117-42800392(-)$1	275	11	21	19.0566
&&&&&&eeee	chr3:184052904-184053150(+)$1	246	91	101	22.6415
c:::::::::	chrX:132669701-132670005(-)$1	304	282	292	17.9245
ggggg333dd	chr2:135206772-135207065(+)$1	293	94	104	18.3018
I{GGGGGGGh	chr19:1258814-1259075(+)$1	261	25	35	16.9811
gg::::::::	chr10:105360450-105360687(-)$1	237	89	99	17.9245
ffffff22hh	chr4:74286819-74287063(+)$1	244	40	50	17.9245
::::::dddd	chr2:96850973-96851219(-)$1	246	76	86	16.8867
mmmmiiiiii	chr5:43291024-43291289(-)$1	265	171	181	15.0943
RRRRRRRRHH	chr21:27253073-27253345(-)$1	272	10	20	18.2075
ldddd:::::	chr7:103112483-103112745(-)$1	262	156	166	15.4716
eeeeennnnn	chrX:131506498-131506847(-)$1	349	97	107	17.5471
eeesssssss	chr3:184052839-184053091(+)$1	252	156	166	22.6415
gggggppppp	chr13:113977557-113977809(+)$1	252	2	12	19.1509
fff:::dddd	chr7:103112445-103112647(-)$1	202	58	68	15.4716
iiiiiiiioo	chr16:18802939-18803249(-)$1	310	67	77	18.2075
GGGGGfffff	chr4:74321356-74321568(+)$1	212	31	41	18.3962
b''''''''h	chr6:132269607-132269834(-)$1	227	102	112	19.0566
NNNNNIIIII	chr17:61909579-61909883(-)$1	304	42	52	17.8301
ggggggpppp	chr1:20978615-20978917(-)$1	302	206	216	14.9999
::::::::::	chr1:43392302-43392551(-)$1	249	75	85	18.2075
==========	chr7:127231551-127231826(+)$1	275	84	94	21.5094
hhh:::::::	chr19:54379490-54379751(+)$1	261	60	70	18.3018
::::::====	chrX:108885675-108885917(-)$1	242	70	80	18.4905
::::::::::	chr1:44088990-44089266(+)$1	276	265	275	19.3396
ggggg:::EE	chr6:119500512-119500759(-)$1	247	207	217	16.9811
eee::::::D	chr12:66359808-66360071(+)$1	263	64	74	17.0754
2eeeee::::	chr4:74286766-74287005(+)$1	239	29	39	17.9245
ee[eeeeenn	chr1:228285658-228285928(+)$1	270	214	224	19.0566
dvvvvvvvvv	chr3:145787294-145787570(-)$1	276	74	84	18.4905
22========	chr2:20648242-20648505(+)$1	263	79	89	14.8113
BKKEEEEE::	chr7:103112379-103112622(-)$1	243	33	43	15.4716
HHHH:::::J	chr17:18111743-18112013(+)$1	270	65	75	20.6603
gEEEEE{HHH	chr1:55315566-55315807(-)$1	241	93	103	17.4528
JJJJJJJJJJ	chr1:234742446-234742694(-)$1	248	11	21	21.6981
eemmmmeeee	chr16:2569993-2570292(+)$1	299	37	47	14.3396
uuiiiiiiii	chr12:106632168-106632459(-)$1	291	75	85	21.5094
========qq	chr17:4848920-4849209(-)$1	289	227	237	21.5094
yyyyyyyyyy	chr20:36033553-36033820(+)$1	267	80	90	21.5094
gffffffrrr	chr2:36777952-36778233(+)$1	281	85	95	18.2075
::::::::::	chr5:133291337-133291585(-)$1	248	0	10	16.7924
e=========	chr17:39979280-39979529(+)$1	249	150	160	17.8301
gg]ffffff:	chr16:87863683-87863993(-)$1	310	42	52	20.6603
d!!ggggggg	chr11:64894800-64895099(-)$1	299	88	98	18.1132
55555hhhhh	chr1:234742494-234742748(-)$1	254	65	75	21.6981
==========	chr4:74321305-74321556(+)$1	251	82	92	18.3962
====22gggg	chr11:62392232-62392474(-)$1	242	99	109	18.7735
=!!eeeee[c	chr16:2820990-2821317(+)$1	327	23	33	21.5094
GGGZZZFFFF	chr6:7586604-7586866(+)$1	262	94	104	17.3584
==========	chr16:56643143-56643390(+)$1	247	177	187	18.5849

#DB
(..((..(((	chr1:145441080-145441317(+)$1	1	51	61	17.1698
..........	chr11:130014465-130014727(+)$1	1	21	31	19.0566
))).....((	chr12:66357128-66357423(+)$1	1	224	234	17.2641
(((((.....	chr5:42800117-42800392(-)$1	1	11	21	19.0566
......((((	chr3:184052904-184053150(+)$1	1	91	101	22.6415
).........	chrX:132669701-132670005(-)$1	1	282	292	17.9245
)))))...))	chr2:135206772-135207065(+)$1	1	94	104	18.3018
(.((((((((	chr19:1258814-1259075(+)$1	1	25	35	16.9811
))........	chr10:105360450-105360687(-)$1	1	89	99	17.9245
))))))..))	chr4:74286819-74287063(+)$1	1	40	50	17.9245
......((((	chr2:96850973-96851219(-)$1	1	76	86	16.8867
....))))))	chr5:43291024-43291289(-)$1	1	171	181	15.0943
........((	chr21:27253073-27253345(-)$1	1	10	20	18.2075
.)))).....	chr7:103112483-103112745(-)$1	1	156	166	15.4716
(((((.....	chrX:131506498-131506847(-)$1	1	97	107	17.5471
(((.......	chr3:184052839-184053091(+)$1	1	156	166	22.6415
(((((.....	chr13:113977557-113977809(+)$1	1	2	12	19.1509
)))...((((	chr7:103112445-103112647(-)$1	1	58	68	15.4716
((((((((..	chr16:18802939-18803249(-)$1	1	67	77	18.2075
((((((((((	chr4:74321356-74321568(+)$1	1	31	41	18.3962
(........(	chr6:132269607-132269834(-)$1	1	102	112	19.0566
.....(((((	chr17:61909579-61909883(-)$1	1	42	52	17.8301
((((((....	chr1:20978615-20978917(-)$1	1	206	216	14.9999
..........	chr1:43392302-43392551(-)$1	1	75	85	18.2075
((((((((((	chr7:127231551-127231826(+)$1	1	84	94	21.5094
))).......	chr19:54379490-54379751(+)$1	1	60	70	18.3018
......((((	chrX:108885675-108885917(-)$1	1	70	80	18.4905
..........	chr1:44088990-44089266(+)$1	1	265	275	19.3396
)))))...))	chr6:119500512-119500759(-)$1	1	207	217	16.9811
)))......(	chr12:66359808-66360071(+)$1	1	64	74	17.0754
.)))))....	chr4:74286766-74287005(+)$1	1	29	39	17.9245
((.(((((..	chr1:228285658-228285928(+)$1	1	214	224	19.0566
(.........	chr3:145787294-145787570(-)$1	1	74	84	18.4905
..))))))))	chr2:20648242-20648505(+)$1	1	79	89	14.8113
(..(((((..	chr7:103112379-103112622(-)$1	1	33	43	15.4716
((((.....(	chr17:18111743-18112013(+)$1	1	65	75	20.6603
)(((((.(((	chr1:55315566-55315807(-)$1	1	93	103	17.4528
((((((((((	chr1:234742446-234742694(-)$1	1	11	21	21.6981
((....))))	chr16:2569993-2570292(+)$1	1	37	47	14.3396
..))))))))	chr12:106632168-106632459(-)$1	1	75	85	21.5094
((((((((..	chr17:4848920-4849209(-)$1	1	227	237	21.5094
..........	chr20:36033553-36033820(+)$1	1	80	90	21.5094
(((((((...	chr2:36777952-36778233(+)$1	1	85	95	18.2075
..........	chr5:133291337-133291585(-)$1	1	0	10	16.7924
))))))))))	chr17:39979280-39979529(+)$1	1	150	160	17.8301
)).)))))).	chr16:87863683-87863993(-)$1	1	42	52	20.6603
(..(((((((	chr11:64894800-64895099(-)$1	1	88	98	18.1132
.....)))))	chr1:234742494-234742748(-)$1	1	65	75	21.6981
))))))))))	chr4:74321305-74321556(+)$1	1	82	92	18.3962
))))..))))	chr11:62392232-62392474(-)$1	1	99	109	18.7735
(..(((((.(	chr16:2820990-2821317(+)$1	1	23	33	21.5094
)))...))))	chr6:7586604-7586866(+)$1	1	94	104	17.3584
))))))))))	chr16:56643143-56643390(+)$1	1	177	187	18.5849

#PSSM
U : 0.73	C : 0.07	A : 0.07	u : 0.05	G : 0.01	g : 0.01	a : 0.01	
U : 0.84	u : 0.05	C : 0.03	a : 0.03	G : 0.01	
U : 0.88	u : 0.09	G : 0.01	
U : 0.86	u : 0.07	G : 0.03	A : 0.01	
U : 0.71	C : 0.13	G : 0.07	u : 0.07	
U : 0.86	u : 0.09	C : 0.01	G : 0.01	
A : 0.39	C : 0.26	U : 0.22	a : 0.05	g : 0.03	G : 0.01	
U : 0.79	C : 0.11	u : 0.09	
U : 0.79	u : 0.07	G : 0.05	C : 0.03	A : 0.01	a : 0.01	
U : 0.86	u : 0.07	A : 0.03	a : 0.01	

#score	975.4716981132079
#seq	53
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_transcript_m1_run1.nuc.txt

#NT
UGC	chr4:89442244-89442506(-)$1	262	102	105	9.0000
UGC	chr16:85646223-85646456(+)$1	233	11	14	9.0000
UGC	chr15:91503029-91503313(+)$1	284	25	28	9.0000
UGC	chr5:137688350-137688633(+)$1	283	42	45	9.0000
UGC	chr7:100804274-100804560(+)$1	286	3	6	9.0000
UGC	chr10:99520151-99520452(+)$1	301	41	44	9.0000
UGC	chr3:195635818-195636079(-)$1	261	77	80	9.0000
UGC	chr8:101734025-101734236(-)$1	211	194	197	9.0000
UGC	chr19:10800347-10800576(+)$1	229	32	35	9.0000
UGC	chr3:33038273-33038537(-)$1	264	64	67	9.0000
UGC	chr1:2239796-2240049(+)$1	253	9	12	9.0000
UGC	chr5:133726163-133726436(+)$1	273	57	60	9.0000
UGC	chr12:53400660-53400943(+)$1	283	3	6	9.0000
UGC	chr1:145442313-145442553(+)$1	240	22	25	9.0000
UGC	chr19:44111532-44111832(-)$1	300	23	26	9.0000
UGC	chr1:53737974-53738256(-)$1	282	39	42	9.0000
UGC	chr12:110927870-110928142(+)$1	272	22	25	9.0000
UGC	chr11:2016502-2016741(-)$1	239	28	31	9.0000
UGC	chr1:16061041-16061296(+)$1	255	11	14	9.0000
UGC	chr2:98263437-98263704(+)$1	267	143	146	9.0000
ugc	chrX:20284607-20284883(-)$1	276	3	6	9.0000
UGC	chr14:23528293-23528601(-)$1	308	219	222	9.0000
UGC	chr17:79876081-79876370(-)$1	289	45	48	9.0000
UGC	chr6:111136437-111136694(-)$1	257	111	114	9.0000
UGC	chr4:152021280-152021548(+)$1	268	1	4	9.0000
UGC	chr10:73576341-73576608(-)$1	267	63	66	9.0000
UGC	chr21:46495143-46495404(+)$1	261	3	6	9.0000
UGC	chr1:235274974-235275221(-)$1	247	160	163	9.0000
UGC	chr3:5025415-5025734(+)$1	319	37	40	9.0000
UGC	chr2:232573991-232574232(+)$1	241	124	127	9.0000
UGC	chr11:67202640-67202895(+)$1	255	41	44	9.0000
UGC	chr17:73774234-73774530(-)$1	296	35	38	9.0000
UGC	chr9:110091972-110092220(+)$1	248	131	134	9.0000
UGC	chr3:5025995-5026226(+)$1	231	3	6	9.0000
UGC	chr7:6201415-6201691(-)$1	276	0	3	9.0000
UGC	chr7:97920547-97920809(+)$1	262	142	145	9.0000
UGC	chr5:139646393-139646715(-)$1	322	42	45	9.0000
UGC	chr6:37142983-37143247(+)$1	264	26	29	9.0000
UGC	chrX:67945430-67945711(+)$1	281	88	91	9.0000
UGC	chr22:42302189-42302420(+)$1	231	28	31	9.0000
UGC	chr19:10406936-10407193(+)$1	257	0	3	9.0000
UGC	chr1:12091779-12092058(+)$1	279	9	12	9.0000
UGC	chr19:54972240-54972494(+)$1	254	0	3	9.0000
UGC	chr20:57570148-57570398(-)$1	250	150	153	9.0000
UGC	chr1:1310354-1310630(-)$1	276	18	21	9.0000
UGC	chr15:40760177-40760451(+)$1	274	34	37	9.0000
UGC	chr8:102217418-102217667(-)$1	249	25	28	9.0000
UGC	chr13:113380533-113380831(+)$1	298	0	3	9.0000
UGC	chr11:62482654-62482894(-)$1	240	130	133	9.0000
UGC	chr11:62482150-62482388(-)$1	238	60	63	9.0000
UGC	chr19:14874256-14874552(-)$1	296	189	192	9.0000
UGC	chrX:62567083-62567372(-)$1	289	142	145	9.0000
Ugc	chr2:46926276-46926552(+)$1	276	3	6	9.0000
UGC	chr1:45117013-45117267(+)$1	254	13	16	9.0000
UGC	chr17:79991902-79992155(+)$1	253	46	49	9.0000
UGC	chr22:22114550-22114808(-)$1	258	211	214	9.0000
UGC	chr11:5269419-5269677(-)$1	258	24	27	9.0000
UGC	chr17:42430270-42430541(+)$1	271	91	94	9.0000
UGC	chr1:54683851-54684123(+)$1	272	54	57	9.0000
UGC	chr14:103985922-103986156(-)$1	234	1	4	9.0000
UGC	chr8:20078998-20079281(+)$1	283	37	40	9.0000
ugc	chr19:46701099-46701359(-)$1	260	125	128	9.0000
UGC	chr19:573010-573249(+)$1	239	30	33	9.0000
ugc	chr17:77812525-77812779(-)$1	254	39	42	9.0000
UGC	chrX:153664333-153664599(+)$1	266	0	3	9.0000
UGC	chr7:98993711-98993957(-)$1	246	27	30	9.0000
UGC	chr21:45563528-45563801(+)$1	273	12	15	9.0000
UGC	chr12:49490952-49491214(-)$1	262	30	33	9.0000
UGC	chr9:131770806-131771061(-)$1	255	10	13	9.0000
UGC	chr19:18499790-18500063(+)$1	273	10	13	9.0000
UGC	chr18:55990256-55990521(+)$1	265	2	5	9.0000
ugc	chr17:42276848-42277123(-)$1	275	8	11	9.0000
UGC	chr12:54686217-54686486(-)$1	269	53	56	9.0000
UGC	chr1:150190809-150191109(-)$1	300	78	81	9.0000
UGC	chr7:99001408-99001679(-)$1	271	63	66	9.0000
UGC	chr1:173836028-173836259(-)$1	231	84	87	9.0000
UGC	chr15:38776747-38777033(+)$1	286	136	139	9.0000
UGC	chr10:74767764-74768063(-)$1	299	234	237	9.0000
UGC	chr1:115292478-115292707(-)$1	229	28	31	9.0000
UGC	chr2:55200075-55200316(-)$1	241	117	120	9.0000
UGC	chr1:186282928-186283251(-)$1	323	103	106	9.0000
UGC	chr9:130925805-130926080(+)$1	275	12	15	9.0000
UGC	chr6:33171435-33171717(+)$1	282	3	6	9.0000
UGC	chr11:2018733-2019028(-)$1	295	43	46	9.0000
UGC	chr20:62299195-62299468(+)$1	273	79	82	9.0000
UGC	chr2:240287263-240287519(-)$1	256	8	11	9.0000
UGC	chr12:22217955-22218212(+)$1	257	5	8	9.0000
UGC	chr13:100215260-100215519(+)$1	259	8	11	9.0000
UGC	chr1:36770528-36770776(+)$1	248	171	174	9.0000
UGC	chr19:54972196-54972440(+)$1	244	18	21	9.0000
UGC	chr5:177022655-177022883(+)$1	228	62	65	9.0000
UGC	chr17:79991782-79992064(+)$1	282	85	88	9.0000
UGC	chr14:76117312-76117553(-)$1	241	44	47	9.0000
UGC	chr15:41773441-41773667(+)$1	226	84	87	9.0000
UGC	chr17:46698447-46698713(-)$1	266	22	25	9.0000
UGC	chr19:12903785-12904052(+)$1	267	55	58	9.0000
UGC	chr13:27830471-27830692(+)$1	221	103	106	9.0000
ugc	chr22:49920968-49921194(-)$1	226	9	12	9.0000
UGC	chr16:4931999-4932245(+)$1	246	14	17	9.0000

#otherMatches

#Struct PSSM
g]a	chr4:100870766-100871003(-)$1	237	94	97	9.0000
fff	chr4:89442244-89442506(-)$1	262	102	105	9.0000
EEE	chr16:85646223-85646456(+)$1	233	11	14	9.0000
mbb	chr15:91503029-91503313(+)$1	284	25	28	9.0000
:BB	chr5:137688350-137688633(+)$1	283	42	45	9.0000
EEE	chr7:100804274-100804560(+)$1	286	3	6	9.0000
OOO	chr10:99520151-99520452(+)$1	301	41	44	9.0000
ddd	chr3:195635818-195636079(-)$1	261	77	80	9.0000
eee	chr8:101734025-101734236(-)$1	211	194	197	9.0000
DDD	chr19:10800347-10800576(+)$1	229	32	35	9.0000
d[=	chr3:33038273-33038537(-)$1	264	64	67	9.0000
KKG	chr1:2239796-2240049(+)$1	253	9	12	9.0000
EEE	chr5:133726163-133726436(+)$1	273	57	60	9.0000
B{F	chr12:53400660-53400943(+)$1	283	3	6	9.0000
eeq	chr1:145442313-145442553(+)$1	240	22	25	9.0000
:EE	chr19:44111532-44111832(-)$1	300	23	26	9.0000
f[c	chr1:53737974-53738256(-)$1	282	39	42	9.0000
DDD	chr12:110927870-110928142(+)$1	272	22	25	9.0000
qqq	chr11:2016502-2016741(-)$1	239	28	31	9.0000
ddd	chr1:16061041-16061296(+)$1	255	11	14	9.0000
|||	chr2:98263437-98263704(+)$1	267	143	146	9.0000
eee	chrX:20284607-20284883(-)$1	276	3	6	9.0000
ddd	chr14:23528293-23528601(-)$1	308	219	222	9.0000
ddd	chr17:79876081-79876370(-)$1	289	45	48	9.0000
c[b	chr6:111136437-111136694(-)$1	257	111	114	9.0000
===	chr4:152021280-152021548(+)$1	268	1	4	9.0000
]cc	chr10:73576341-73576608(-)$1	267	63	66	9.0000
CCC	chr21:46495143-46495404(+)$1	261	3	6	9.0000
d::	chr1:235274974-235275221(-)$1	247	160	163	9.0000
eee	chr3:5025415-5025734(+)$1	319	37	40	9.0000
mmd	chr2:232573991-232574232(+)$1	241	124	127	9.0000
eee	chr11:67202640-67202895(+)$1	255	41	44	9.0000
eee	chr17:73774234-73774530(-)$1	296	35	38	9.0000
cbb	chr9:110091972-110092220(+)$1	248	131	134	9.0000
D{D	chr3:5025995-5026226(+)$1	231	3	6	9.0000
::h	chr7:6201415-6201691(-)$1	276	0	3	9.0000
44d	chr7:97920547-97920809(+)$1	262	142	145	9.0000
ccc	chr5:139646393-139646715(-)$1	322	42	45	9.0000
ffb	chr6:37142983-37143247(+)$1	264	26	29	9.0000
:CC	chrX:67945430-67945711(+)$1	281	88	91	9.0000
mmd	chr22:42302189-42302420(+)$1	231	28	31	9.0000
:II	chr19:10406936-10407193(+)$1	257	0	3	9.0000
:::	chr1:12091779-12092058(+)$1	279	9	12	9.0000
:::	chr19:54972240-54972494(+)$1	254	0	3	9.0000
bb2	chr20:57570148-57570398(-)$1	250	150	153	9.0000
bbc	chr1:1310354-1310630(-)$1	276	18	21	9.0000
ffg	chr15:40760177-40760451(+)$1	274	34	37	9.0000
lcc	chr8:102217418-102217667(-)$1	249	25	28	9.0000
CCC	chr13:113380533-113380831(+)$1	298	0	3	9.0000
HHB	chr11:62482654-62482894(-)$1	240	130	133	9.0000
bbh	chr11:62482150-62482388(-)$1	238	60	63	9.0000
iii	chr19:14874256-14874552(-)$1	296	189	192	9.0000
{II	chrX:62567083-62567372(-)$1	289	142	145	9.0000
dee	chr2:46926276-46926552(+)$1	276	3	6	9.0000
:GG	chr1:45117013-45117267(+)$1	254	13	16	9.0000
{A{	chr17:79991902-79992155(+)$1	253	46	49	9.0000
eee	chr22:22114550-22114808(-)$1	258	211	214	9.0000
ddd	chr11:5269419-5269677(-)$1	258	24	27	9.0000
>>>	chr17:42430270-42430541(+)$1	271	91	94	9.0000
&cc	chr1:54683851-54684123(+)$1	272	54	57	9.0000
:BB	chr14:103985922-103986156(-)$1	234	1	4	9.0000
D{B	chr8:20078998-20079281(+)$1	283	37	40	9.0000
e]c	chr19:46701099-46701359(-)$1	260	125	128	9.0000
ndd	chr19:573010-573249(+)$1	239	30	33	9.0000
llb	chr17:77812525-77812779(-)$1	254	39	42	9.0000
eee	chrX:153664333-153664599(+)$1	266	0	3	9.0000
'''	chr7:98993711-98993957(-)$1	246	27	30	9.0000
fff	chr21:45563528-45563801(+)$1	273	12	15	9.0000
bb"	chr12:49490952-49491214(-)$1	262	30	33	9.0000
nnn	chr9:131770806-131771061(-)$1	255	10	13	9.0000
"bb	chr19:18499790-18500063(+)$1	273	10	13	9.0000
:::	chr18:55990256-55990521(+)$1	265	2	5	9.0000
C{C	chr17:42276848-42277123(-)$1	275	8	11	9.0000
ggg	chr12:54686217-54686486(-)$1	269	53	56	9.0000
d]b	chr1:150190809-150191109(-)$1	300	78	81	9.0000
a]e	chr7:99001408-99001679(-)$1	271	63	66	9.0000
ggg	chr1:173836028-173836259(-)$1	231	84	87	9.0000
eee	chr15:38776747-38777033(+)$1	286	136	139	9.0000
DDY	chr10:74767764-74768063(-)$1	299	234	237	9.0000
ddd	chr1:115292478-115292707(-)$1	229	28	31	9.0000
bhh	chr2:55200075-55200316(-)$1	241	117	120	9.0000
eee	chr1:186282928-186283251(-)$1	323	103	106	9.0000
===	chr9:130925805-130926080(+)$1	275	12	15	9.0000
eee	chr6:33171435-33171717(+)$1	282	3	6	9.0000
ggg	chr11:2018733-2019028(-)$1	295	43	46	9.0000
hhh	chr20:62299195-62299468(+)$1	273	79	82	9.0000
{BB	chr2:240287263-240287519(-)$1	256	8	11	9.0000
[ee	chr12:22217955-22218212(+)$1	257	5	8	9.0000
[bb	chr13:100215260-100215519(+)$1	259	8	11	9.0000
gg[	chr1:36770528-36770776(+)$1	248	171	174	9.0000
GGG	chr19:54972196-54972440(+)$1	244	18	21	9.0000
dd2	chr5:177022655-177022883(+)$1	228	62	65	9.0000
eee	chr17:79991782-79992064(+)$1	282	85	88	9.0000
bb]	chr14:76117312-76117553(-)$1	241	44	47	9.0000
eee	chr15:41773441-41773667(+)$1	226	84	87	9.0000
rrr	chr17:46698447-46698713(-)$1	266	22	25	9.0000
mmm	chr19:12903785-12904052(+)$1	267	55	58	9.0000
[ee	chr13:27830471-27830692(+)$1	221	103	106	9.0000
fff	chr22:49920968-49921194(-)$1	226	9	12	9.0000
FFF	chr16:4931999-4932245(+)$1	246	14	17	9.0000

#DB
).)	chr4:100870766-100871003(-)$1	1	94	97	9.0000
(((	chr4:89442244-89442506(-)$1	1	102	105	9.0000
(((	chr16:85646223-85646456(+)$1	1	11	14	9.0000
.))	chr15:91503029-91503313(+)$1	1	25	28	9.0000
.((	chr5:137688350-137688633(+)$1	1	42	45	9.0000
(((	chr7:100804274-100804560(+)$1	1	3	6	9.0000
...	chr10:99520151-99520452(+)$1	1	41	44	9.0000
)))	chr3:195635818-195636079(-)$1	1	77	80	9.0000
)))	chr8:101734025-101734236(-)$1	1	194	197	9.0000
(((	chr19:10800347-10800576(+)$1	1	32	35	9.0000
(.(	chr3:33038273-33038537(-)$1	1	64	67	9.0000
..(	chr1:2239796-2240049(+)$1	1	9	12	9.0000
(((	chr5:133726163-133726436(+)$1	1	57	60	9.0000
(.(	chr12:53400660-53400943(+)$1	1	3	6	9.0000
((.	chr1:145442313-145442553(+)$1	1	22	25	9.0000
.((	chr19:44111532-44111832(-)$1	1	23	26	9.0000
(.(	chr1:53737974-53738256(-)$1	1	39	42	9.0000
(((	chr12:110927870-110928142(+)$1	1	22	25	9.0000
...	chr11:2016502-2016741(-)$1	1	28	31	9.0000
(((	chr1:16061041-16061296(+)$1	1	11	14	9.0000
...	chr2:98263437-98263704(+)$1	1	143	146	9.0000
(((	chrX:20284607-20284883(-)$1	1	3	6	9.0000
)))	chr14:23528293-23528601(-)$1	1	219	222	9.0000
)))	chr17:79876081-79876370(-)$1	1	45	48	9.0000
(.(	chr6:111136437-111136694(-)$1	1	111	114	9.0000
(((	chr4:152021280-152021548(+)$1	1	1	4	9.0000
.))	chr10:73576341-73576608(-)$1	1	63	66	9.0000
(((	chr21:46495143-46495404(+)$1	1	3	6	9.0000
)..	chr1:235274974-235275221(-)$1	1	160	163	9.0000
(((	chr3:5025415-5025734(+)$1	1	37	40	9.0000
..)	chr2:232573991-232574232(+)$1	1	124	127	9.0000
(((	chr11:67202640-67202895(+)$1	1	41	44	9.0000
)))	chr17:73774234-73774530(-)$1	1	35	38	9.0000
(((	chr9:110091972-110092220(+)$1	1	131	134	9.0000
(.(	chr3:5025995-5026226(+)$1	1	3	6	9.0000
..(	chr7:6201415-6201691(-)$1	1	0	3	9.0000
..)	chr7:97920547-97920809(+)$1	1	142	145	9.0000
(((	chr5:139646393-139646715(-)$1	1	42	45	9.0000
(((	chr6:37142983-37143247(+)$1	1	26	29	9.0000
.((	chrX:67945430-67945711(+)$1	1	88	91	9.0000
..)	chr22:42302189-42302420(+)$1	1	28	31	9.0000
.((	chr19:10406936-10407193(+)$1	1	0	3	9.0000
...	chr1:12091779-12092058(+)$1	1	9	12	9.0000
...	chr19:54972240-54972494(+)$1	1	0	3	9.0000
)).	chr20:57570148-57570398(-)$1	1	150	153	9.0000
(((	chr1:1310354-1310630(-)$1	1	18	21	9.0000
(((	chr15:40760177-40760451(+)$1	1	34	37	9.0000
.))	chr8:102217418-102217667(-)$1	1	25	28	9.0000
(((	chr13:113380533-113380831(+)$1	1	0	3	9.0000
(((	chr11:62482654-62482894(-)$1	1	130	133	9.0000
)))	chr11:62482150-62482388(-)$1	1	60	63	9.0000
(((	chr19:14874256-14874552(-)$1	1	189	192	9.0000
.((	chrX:62567083-62567372(-)$1	1	142	145	9.0000
(((	chr2:46926276-46926552(+)$1	1	3	6	9.0000
.((	chr1:45117013-45117267(+)$1	1	13	16	9.0000
.(.	chr17:79991902-79992155(+)$1	1	46	49	9.0000
)))	chr22:22114550-22114808(-)$1	1	211	214	9.0000
))(	chr11:5269419-5269677(-)$1	1	24	27	9.0000
...	chr17:42430270-42430541(+)$1	1	91	94	9.0000
.((	chr1:54683851-54684123(+)$1	1	54	57	9.0000
.((	chr14:103985922-103986156(-)$1	1	1	4	9.0000
(.(	chr8:20078998-20079281(+)$1	1	37	40	9.0000
).)	chr19:46701099-46701359(-)$1	1	125	128	9.0000
.))	chr19:573010-573249(+)$1	1	30	33	9.0000
..)	chr17:77812525-77812779(-)$1	1	39	42	9.0000
(((	chrX:153664333-153664599(+)$1	1	0	3	9.0000
...	chr7:98993711-98993957(-)$1	1	27	30	9.0000
(((	chr21:45563528-45563801(+)$1	1	12	15	9.0000
((.	chr12:49490952-49491214(-)$1	1	30	33	9.0000
...	chr9:131770806-131771061(-)$1	1	10	13	9.0000
.((	chr19:18499790-18500063(+)$1	1	10	13	9.0000
...	chr18:55990256-55990521(+)$1	1	2	5	9.0000
(.(	chr17:42276848-42277123(-)$1	1	8	11	9.0000
)))	chr12:54686217-54686486(-)$1	1	53	56	9.0000
).)	chr1:150190809-150191109(-)$1	1	78	81	9.0000
).)	chr7:99001408-99001679(-)$1	1	63	66	9.0000
(((	chr1:173836028-173836259(-)$1	1	84	87	9.0000
)))	chr15:38776747-38777033(+)$1	1	136	139	9.0000
)).	chr10:74767764-74768063(-)$1	1	234	237	9.0000
(((	chr1:115292478-115292707(-)$1	1	28	31	9.0000
)((	chr2:55200075-55200316(-)$1	1	117	120	9.0000
)))	chr1:186282928-186283251(-)$1	1	103	106	9.0000
(((	chr9:130925805-130926080(+)$1	1	12	15	9.0000
(((	chr6:33171435-33171717(+)$1	1	3	6	9.0000
(((	chr11:2018733-2019028(-)$1	1	43	46	9.0000
(((	chr20:62299195-62299468(+)$1	1	79	82	9.0000
.((	chr2:240287263-240287519(-)$1	1	8	11	9.0000
.((	chr12:22217955-22218212(+)$1	1	5	8	9.0000
.((	chr13:100215260-100215519(+)$1	1	8	11	9.0000
((.	chr1:36770528-36770776(+)$1	1	171	174	9.0000
(((	chr19:54972196-54972440(+)$1	1	18	21	9.0000
)).	chr5:177022655-177022883(+)$1	1	62	65	9.0000
)))	chr17:79991782-79992064(+)$1	1	85	88	9.0000
)).	chr14:76117312-76117553(-)$1	1	44	47	9.0000
)))	chr15:41773441-41773667(+)$1	1	84	87	9.0000
...	chr17:46698447-46698713(-)$1	1	22	25	9.0000
...	chr19:12903785-12904052(+)$1	1	55	58	9.0000
.((	chr13:27830471-27830692(+)$1	1	103	106	9.0000
(((	chr22:49920968-49921194(-)$1	1	9	12	9.0000
(((	chr16:4931999-4932245(+)$1	1	14	17	9.0000

#PSSM
U : 0.95	u : 0.05	
G : 0.94	g : 0.06	
C : 0.94	c : 0.06	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_UTR_m1_run2.nuc.txt

#NT
GGC	chr16:29810482-29810759(+)$1	277	27	30	9.0000
GGC	chr7:56119367-56119620(+)$1	253	14	17	9.0000
GGC	chr3:184041225-184041429(+)$1	204	104	107	9.0000
GGC	chr3:127339440-127339685(+)$1	245	13	16	9.0000
GGC	chr18:12376914-12377202(-)$1	288	4	7	9.0000
ggc	chr19:59056022-59056243(+)$1	221	1	4	9.0000
GGC	chr1:245027497-245027759(-)$1	262	1	4	9.0000
GGC	chr3:47887146-47887421(+)$1	275	49	52	9.0000
GGC	chr9:134351204-134351447(+)$1	243	8	11	9.0000
GGC	chr3:25705708-25706013(-)$1	305	29	32	9.0000
GGC	chr5:169140930-169141188(+)$1	258	39	42	9.0000
GGC	chr5:10255964-10256198(+)$1	234	89	92	9.0000
GGC	chr20:418979-419225(-)$1	246	153	156	9.0000
GGC	chr3:47890607-47890863(+)$1	256	33	36	9.0000
GGC	chr11:61077762-61077992(-)$1	230	101	104	9.0000
GGC	chr11:61077181-61077440(-)$1	259	70	73	9.0000
GGC	chr14:65346431-65346691(-)$1	260	5	8	9.0000
GGC	chr9:111775540-111775910(-)$1	370	2	5	9.0000
GGC	chr19:42409988-42410265(+)$1	277	18	21	9.0000
GGC	chr1:27106183-27106447(+)$1	264	29	32	9.0000
ggc	chr19:41781966-41782224(+)$1	258	17	20	9.0000
GGC	chr5:112214016-112214270(-)$1	254	96	99	9.0000
GGC	chr1:19426024-19426243(-)$1	219	113	116	9.0000
GGC	chr3:184040868-184041079(+)$1	211	1	4	9.0000
GGC	chr11:65819748-65819985(+)$1	237	19	22	9.0000
GGC	chrX:153583268-153583498(-)$1	230	24	27	9.0000
ggc	chr7:150071025-150071360(+)$1	335	19	22	9.0000
GGC	chr1:19438931-19439161(-)$1	230	6	9	9.0000
GGC	chr3:127323651-127323913(+)$1	262	142	145	9.0000
GGC	chr6:31749811-31750038(-)$1	227	3	6	9.0000
GGC	chrX:153590575-153590800(-)$1	225	32	35	9.0000
GGC	chr1:19536596-19536848(-)$1	252	0	3	9.0000
GGC	chr6:31760675-31760933(-)$1	258	35	38	9.0000
GGC	chr12:6715459-6715711(-)$1	252	11	14	9.0000
GGC	chr9:123171409-123171667(-)$1	258	39	42	9.0000
GGC	chr7:158449181-158449428(-)$1	247	68	71	9.0000
GGC	chrX:153588123-153588341(-)$1	218	81	84	9.0000
GGC	chr3:184038397-184038610(+)$1	213	79	82	9.0000
GGC	chr7:99691817-99692051(-)$1	234	25	28	9.0000
GGC	chr20:56100013-56100302(-)$1	289	47	50	9.0000
GGC	chr11:57585812-57586070(+)$1	258	5	8	9.0000
GGC	chr17:38137186-38137444(+)$1	258	18	21	9.0000
GGC	chr17:73389605-73389889(-)$1	284	8	11	9.0000
GGC	chr12:113614590-113614836(-)$1	246	53	56	9.0000
GGC	chr11:14521196-14521451(-)$1	255	14	17	9.0000
GGC	chr9:139730091-139730331(+)$1	240	3	6	9.0000
GGC	chr15:89865926-89866211(-)$1	285	141	144	9.0000
GGC	chrX:153578428-153578663(-)$1	235	1	4	9.0000
GGC	chr3:127339485-127339726(+)$1	241	54	57	9.0000
GGC	chr4:151936251-151936533(-)$1	282	60	63	9.0000
GGC	chr6:31750206-31750424(-)$1	218	14	17	9.0000
GGC	chr7:2394740-2394994(+)$1	254	25	28	9.0000
GGC	chrX:153629164-153629425(+)$1	261	11	14	9.0000
GGC	chr3:25705838-25706121(-)$1	283	7	10	9.0000
ggc	chr6:160210422-160210684(-)$1	262	4	7	9.0000
GGC	chr16:29808174-29808456(+)$1	282	54	57	9.0000
GGC	chr11:62368931-62369199(-)$1	268	0	3	9.0000
GGC	chr19:46857058-46857342(+)$1	284	20	23	9.0000
GGC	chr7:99691697-99691945(-)$1	248	32	35	9.0000
GGC	chr11:14521141-14521396(-)$1	255	77	80	9.0000
GGC	chr10:32345096-32345366(-)$1	270	23	26	9.0000
GGC	chrX:153581427-153581662(-)$1	235	5	8	9.0000
GGC	chr7:150069178-150069426(+)$1	248	13	16	9.0000
GGC	chr17:1553987-1554230(-)$1	243	20	23	9.0000
GGC	chr19:7707216-7707476(+)$1	260	77	80	9.0000
GGC	chrX:153590930-153591138(-)$1	208	1	4	9.0000
GGC	chr17:38137010-38137346(+)$1	336	18	21	9.0000
GGC	chr3:184049030-184049251(+)$1	221	48	51	9.0000
GGC	chr5:138260940-138261181(+)$1	241	117	120	9.0000
GGC	chr2:73461338-73461587(+)$1	249	62	65	9.0000
GGC	chr11:62368860-62369131(-)$1	271	11	14	9.0000
GGC	chr15:28501215-28501506(-)$1	291	97	100	9.0000
GGC	chr18:33605384-33605667(-)$1	283	38	41	9.0000
GGC	chrX:153588823-153589048(-)$1	225	6	9	9.0000
GGC	chr5:140998385-140998634(-)$1	249	20	23	9.0000
GGC	chr12:57906546-57906803(+)$1	257	51	54	9.0000
GGC	chr16:3740818-3741069(-)$1	251	124	127	9.0000
GGC	chr10:129924330-129924584(-)$1	254	19	22	9.0000
GGC	chr22:30752714-30752992(-)$1	278	28	31	9.0000
GGC	chr5:140957695-140957956(-)$1	261	137	140	9.0000
GGC	chrX:153586603-153586823(-)$1	220	17	20	9.0000
GGC	chr17:1587973-1588194(-)$1	221	40	43	9.0000
GGC	chr12:56511534-56511787(+)$1	253	18	21	9.0000
GGC	chr19:41770253-41770537(+)$1	284	7	10	9.0000
GGC	chr10:71075451-71075720(+)$1	269	10	13	9.0000
GGC	chr12:6715393-6715659(-)$1	266	49	52	9.0000
GGC	chr11:62368811-62369060(-)$1	249	7	10	9.0000
GGC	chr8:17780280-17780579(+)$1	299	9	12	9.0000
GGC	chr19:8550626-8550936(+)$1	310	18	21	9.0000
GGC	chr11:62433151-62433412(+)$1	261	16	19	9.0000
GGC	chr5:154135150-154135415(+)$1	265	16	19	9.0000
GGC	chr8:48874612-48874875(+)$1	263	41	44	9.0000
GGC	chr17:38573974-38574248(-)$1	274	50	53	9.0000
ggc	chr19:7706535-7706838(+)$1	303	0	3	9.0000
GGC	chr21:16436963-16437408(-)$1	445	8	11	9.0000
GGC	chr5:177631567-177631822(+)$1	255	21	24	9.0000
GGC	chr8:48887413-48887623(+)$1	210	23	26	9.0000
GGC	chr3:184040778-184041002(+)$1	224	91	94	9.0000
GGC	chr19:10790422-10790707(+)$1	285	15	18	9.0000

#otherMatches

#Struct PSSM
:::	chr1:36689935-36690205(+)$1	270	7	10	9.0000
lcc	chr16:29810482-29810759(+)$1	277	27	30	9.0000
GGG	chr7:56119367-56119620(+)$1	253	14	17	9.0000
nbb	chr3:184041225-184041429(+)$1	204	104	107	9.0000
%%%	chr3:127339440-127339685(+)$1	245	13	16	9.0000
fff	chr18:12376914-12377202(-)$1	288	4	7	9.0000
:bb	chr19:59056022-59056243(+)$1	221	1	4	9.0000
eee	chr1:245027497-245027759(-)$1	262	1	4	9.0000
CCK	chr3:47887146-47887421(+)$1	275	49	52	9.0000
CCC	chr9:134351204-134351447(+)$1	243	8	11	9.0000
:GG	chr3:25705708-25706013(-)$1	305	29	32	9.0000
===	chr5:169140930-169141188(+)$1	258	39	42	9.0000
!!c	chr5:10255964-10256198(+)$1	234	89	92	9.0000
fff	chr20:418979-419225(-)$1	246	153	156	9.0000
HHH	chr3:47890607-47890863(+)$1	256	33	36	9.0000
dcc	chr11:61077762-61077992(-)$1	230	101	104	9.0000
cco	chr11:61077181-61077440(-)$1	259	70	73	9.0000
bb[	chr14:65346431-65346691(-)$1	260	5	8	9.0000
FFF	chr9:111775540-111775910(-)$1	370	2	5	9.0000
GGG	chr19:42409988-42410265(+)$1	277	18	21	9.0000
ccc	chr1:27106183-27106447(+)$1	264	29	32	9.0000
:::	chr19:41781966-41782224(+)$1	258	17	20	9.0000
ddd	chr5:112214016-112214270(-)$1	254	96	99	9.0000
dd]	chr1:19426024-19426243(-)$1	219	113	116	9.0000
ddd	chr3:184040868-184041079(+)$1	211	1	4	9.0000
EEE	chr11:65819748-65819985(+)$1	237	19	22	9.0000
:::	chrX:153583268-153583498(-)$1	230	24	27	9.0000
DDD	chr7:150071025-150071360(+)$1	335	19	22	9.0000
iii	chr1:19438931-19439161(-)$1	230	6	9	9.0000
fff	chr3:127323651-127323913(+)$1	262	142	145	9.0000
ee#	chr6:31749811-31750038(-)$1	227	3	6	9.0000
eea	chrX:153590575-153590800(-)$1	225	32	35	9.0000
ddd	chr1:19536596-19536848(-)$1	252	0	3	9.0000
ee!	chr6:31760675-31760933(-)$1	258	35	38	9.0000
III	chr12:6715459-6715711(-)$1	252	11	14	9.0000
{BB	chr9:123171409-123171667(-)$1	258	39	42	9.0000
dd[	chr7:158449181-158449428(-)$1	247	68	71	9.0000
CCd	chrX:153588123-153588341(-)$1	218	81	84	9.0000
ccc	chr3:184038397-184038610(+)$1	213	79	82	9.0000
fff	chr7:99691817-99692051(-)$1	234	25	28	9.0000
abb	chr20:56100013-56100302(-)$1	289	47	50	9.0000
fff	chr11:57585812-57586070(+)$1	258	5	8	9.0000
bbo	chr17:38137186-38137444(+)$1	258	18	21	9.0000
PPP	chr17:73389605-73389889(-)$1	284	8	11	9.0000
iii	chr12:113614590-113614836(-)$1	246	53	56	9.0000
fff	chr11:14521196-14521451(-)$1	255	14	17	9.0000
EEE	chr9:139730091-139730331(+)$1	240	3	6	9.0000
DDD	chr15:89865926-89866211(-)$1	285	141	144	9.0000
eee	chrX:153578428-153578663(-)$1	235	1	4	9.0000
ddd	chr3:127339485-127339726(+)$1	241	54	57	9.0000
cc2	chr4:151936251-151936533(-)$1	282	60	63	9.0000
eee	chr6:31750206-31750424(-)$1	218	14	17	9.0000
ee[	chr7:2394740-2394994(+)$1	254	25	28	9.0000
DDD	chrX:153629164-153629425(+)$1	261	11	14	9.0000
!ff	chr3:25705838-25706121(-)$1	283	7	10	9.0000
EEE	chr6:160210422-160210684(-)$1	262	4	7	9.0000
D:d	chr16:29808174-29808456(+)$1	282	54	57	9.0000
ccc	chr11:62368931-62369199(-)$1	268	0	3	9.0000
fff	chr19:46857058-46857342(+)$1	284	20	23	9.0000
ddd	chr7:99691697-99691945(-)$1	248	32	35	9.0000
eee	chr11:14521141-14521396(-)$1	255	77	80	9.0000
fff	chr10:32345096-32345366(-)$1	270	23	26	9.0000
eee	chrX:153581427-153581662(-)$1	235	5	8	9.0000
ccc	chr7:150069178-150069426(+)$1	248	13	16	9.0000
cc[	chr17:1553987-1554230(-)$1	243	20	23	9.0000
dde	chr19:7707216-7707476(+)$1	260	77	80	9.0000
DDD	chrX:153590930-153591138(-)$1	208	1	4	9.0000
{BB	chr17:38137010-38137346(+)$1	336	18	21	9.0000
hhh	chr3:184049030-184049251(+)$1	221	48	51	9.0000
ccc	chr5:138260940-138261181(+)$1	241	117	120	9.0000
DDD	chr2:73461338-73461587(+)$1	249	62	65	9.0000
HHH	chr11:62368860-62369131(-)$1	271	11	14	9.0000
!!c	chr15:28501215-28501506(-)$1	291	97	100	9.0000
avv	chr18:33605384-33605667(-)$1	283	38	41	9.0000
DDD	chrX:153588823-153589048(-)$1	225	6	9	9.0000
b[c	chr5:140998385-140998634(-)$1	249	20	23	9.0000
ooc	chr12:57906546-57906803(+)$1	257	51	54	9.0000
ddd	chr16:3740818-3741069(-)$1	251	124	127	9.0000
E{A	chr10:129924330-129924584(-)$1	254	19	22	9.0000
FFF	chr22:30752714-30752992(-)$1	278	28	31	9.0000
cc[	chr5:140957695-140957956(-)$1	261	137	140	9.0000
ddd	chrX:153586603-153586823(-)$1	220	17	20	9.0000
fmm	chr17:1587973-1588194(-)$1	221	40	43	9.0000
mmm	chr12:56511534-56511787(+)$1	253	18	21	9.0000
ccc	chr19:41770253-41770537(+)$1	284	7	10	9.0000
eee	chr10:71075451-71075720(+)$1	269	10	13	9.0000
eee	chr12:6715393-6715659(-)$1	266	49	52	9.0000
F{C	chr11:62368811-62369060(-)$1	249	7	10	9.0000
FFF	chr8:17780280-17780579(+)$1	299	9	12	9.0000
{DD	chr19:8550626-8550936(+)$1	310	18	21	9.0000
ccc	chr11:62433151-62433412(+)$1	261	16	19	9.0000
CCC	chr5:154135150-154135415(+)$1	265	16	19	9.0000
cc:	chr8:48874612-48874875(+)$1	263	41	44	9.0000
fff	chr17:38573974-38574248(-)$1	274	50	53	9.0000
CCC	chr19:7706535-7706838(+)$1	303	0	3	9.0000
HHH	chr21:16436963-16437408(-)$1	445	8	11	9.0000
B{D	chr5:177631567-177631822(+)$1	255	21	24	9.0000
eee	chr8:48887413-48887623(+)$1	210	23	26	9.0000
fff	chr3:184040778-184041002(+)$1	224	91	94	9.0000
CCC	chr19:10790422-10790707(+)$1	285	15	18	9.0000

#DB
...	chr1:36689935-36690205(+)$1	1	7	10	9.0000
.))	chr16:29810482-29810759(+)$1	1	27	30	9.0000
(((	chr7:56119367-56119620(+)$1	1	14	17	9.0000
.))	chr3:184041225-184041429(+)$1	1	104	107	9.0000
...	chr3:127339440-127339685(+)$1	1	13	16	9.0000
(((	chr18:12376914-12377202(-)$1	1	4	7	9.0000
.((	chr19:59056022-59056243(+)$1	1	1	4	9.0000
(((	chr1:245027497-245027759(-)$1	1	1	4	9.0000
((.	chr3:47887146-47887421(+)$1	1	49	52	9.0000
(((	chr9:134351204-134351447(+)$1	1	8	11	9.0000
.((	chr3:25705708-25706013(-)$1	1	29	32	9.0000
(((	chr5:169140930-169141188(+)$1	1	39	42	9.0000
..(	chr5:10255964-10256198(+)$1	1	89	92	9.0000
)))	chr20:418979-419225(-)$1	1	153	156	9.0000
(((	chr3:47890607-47890863(+)$1	1	33	36	9.0000
(((	chr11:61077762-61077992(-)$1	1	101	104	9.0000
((.	chr11:61077181-61077440(-)$1	1	70	73	9.0000
((.	chr14:65346431-65346691(-)$1	1	5	8	9.0000
(((	chr9:111775540-111775910(-)$1	1	2	5	9.0000
(((	chr19:42409988-42410265(+)$1	1	18	21	9.0000
(((	chr1:27106183-27106447(+)$1	1	29	32	9.0000
...	chr19:41781966-41782224(+)$1	1	17	20	9.0000
)))	chr5:112214016-112214270(-)$1	1	96	99	9.0000
)).	chr1:19426024-19426243(-)$1	1	113	116	9.0000
(((	chr3:184040868-184041079(+)$1	1	1	4	9.0000
(((	chr11:65819748-65819985(+)$1	1	19	22	9.0000
...	chrX:153583268-153583498(-)$1	1	24	27	9.0000
(((	chr7:150071025-150071360(+)$1	1	19	22	9.0000
(((	chr1:19438931-19439161(-)$1	1	6	9	9.0000
)))	chr3:127323651-127323913(+)$1	1	142	145	9.0000
((.	chr6:31749811-31750038(-)$1	1	3	6	9.0000
)))	chrX:153590575-153590800(-)$1	1	32	35	9.0000
(((	chr1:19536596-19536848(-)$1	1	0	3	9.0000
((.	chr6:31760675-31760933(-)$1	1	35	38	9.0000
(((	chr12:6715459-6715711(-)$1	1	11	14	9.0000
.((	chr9:123171409-123171667(-)$1	1	39	42	9.0000
((.	chr7:158449181-158449428(-)$1	1	68	71	9.0000
(((	chrX:153588123-153588341(-)$1	1	81	84	9.0000
(((	chr3:184038397-184038610(+)$1	1	79	82	9.0000
)))	chr7:99691817-99692051(-)$1	1	25	28	9.0000
(((	chr20:56100013-56100302(-)$1	1	47	50	9.0000
(((	chr11:57585812-57586070(+)$1	1	5	8	9.0000
((.	chr17:38137186-38137444(+)$1	1	18	21	9.0000
...	chr17:73389605-73389889(-)$1	1	8	11	9.0000
(((	chr12:113614590-113614836(-)$1	1	53	56	9.0000
(((	chr11:14521196-14521451(-)$1	1	14	17	9.0000
(((	chr9:139730091-139730331(+)$1	1	3	6	9.0000
(((	chr15:89865926-89866211(-)$1	1	141	144	9.0000
(((	chrX:153578428-153578663(-)$1	1	1	4	9.0000
)))	chr3:127339485-127339726(+)$1	1	54	57	9.0000
)).	chr4:151936251-151936533(-)$1	1	60	63	9.0000
(((	chr6:31750206-31750424(-)$1	1	14	17	9.0000
((.	chr7:2394740-2394994(+)$1	1	25	28	9.0000
(((	chrX:153629164-153629425(+)$1	1	11	14	9.0000
.((	chr3:25705838-25706121(-)$1	1	7	10	9.0000
(((	chr6:160210422-160210684(-)$1	1	4	7	9.0000
(.(	chr16:29808174-29808456(+)$1	1	54	57	9.0000
(((	chr11:62368931-62369199(-)$1	1	0	3	9.0000
)))	chr19:46857058-46857342(+)$1	1	20	23	9.0000
)((	chr7:99691697-99691945(-)$1	1	32	35	9.0000
)))	chr11:14521141-14521396(-)$1	1	77	80	9.0000
)))	chr10:32345096-32345366(-)$1	1	23	26	9.0000
(((	chrX:153581427-153581662(-)$1	1	5	8	9.0000
(((	chr7:150069178-150069426(+)$1	1	13	16	9.0000
((.	chr17:1553987-1554230(-)$1	1	20	23	9.0000
))(	chr19:7707216-7707476(+)$1	1	77	80	9.0000
(((	chrX:153590930-153591138(-)$1	1	1	4	9.0000
.((	chr17:38137010-38137346(+)$1	1	18	21	9.0000
(((	chr3:184049030-184049251(+)$1	1	48	51	9.0000
)))	chr5:138260940-138261181(+)$1	1	117	120	9.0000
(((	chr2:73461338-73461587(+)$1	1	62	65	9.0000
(((	chr11:62368860-62369131(-)$1	1	11	14	9.0000
..(	chr15:28501215-28501506(-)$1	1	97	100	9.0000
(..	chr18:33605384-33605667(-)$1	1	38	41	9.0000
(((	chrX:153588823-153589048(-)$1	1	6	9	9.0000
(.(	chr5:140998385-140998634(-)$1	1	20	23	9.0000
..)	chr12:57906546-57906803(+)$1	1	51	54	9.0000
)))	chr16:3740818-3741069(-)$1	1	124	127	9.0000
(.(	chr10:129924330-129924584(-)$1	1	19	22	9.0000
(((	chr22:30752714-30752992(-)$1	1	28	31	9.0000
((.	chr5:140957695-140957956(-)$1	1	137	140	9.0000
(((	chrX:153586603-153586823(-)$1	1	17	20	9.0000
(..	chr17:1587973-1588194(-)$1	1	40	43	9.0000
...	chr12:56511534-56511787(+)$1	1	18	21	9.0000
(((	chr19:41770253-41770537(+)$1	1	7	10	9.0000
(((	chr10:71075451-71075720(+)$1	1	10	13	9.0000
(((	chr12:6715393-6715659(-)$1	1	49	52	9.0000
(.(	chr11:62368811-62369060(-)$1	1	7	10	9.0000
(((	chr8:17780280-17780579(+)$1	1	9	12	9.0000
.((	chr19:8550626-8550936(+)$1	1	18	21	9.0000
)))	chr11:62433151-62433412(+)$1	1	16	19	9.0000
(((	chr5:154135150-154135415(+)$1	1	16	19	9.0000
)).	chr8:48874612-48874875(+)$1	1	41	44	9.0000
(((	chr17:38573974-38574248(-)$1	1	50	53	9.0000
(((	chr19:7706535-7706838(+)$1	1	0	3	9.0000
(((	chr21:16436963-16437408(-)$1	1	8	11	9.0000
(.(	chr5:177631567-177631822(+)$1	1	21	24	9.0000
(((	chr8:48887413-48887623(+)$1	1	23	26	9.0000
)))	chr3:184040778-184041002(+)$1	1	91	94	9.0000
(((	chr19:10790422-10790707(+)$1	1	15	18	9.0000

#PSSM
G : 0.95	g : 0.05	
G : 0.95	g : 0.05	
C : 0.95	c : 0.05	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_transcript_m3_run1.nuc.txt

#NT
UAUGAAGAACAUAUUUAUCGUUGUGAAGAUGAACGCUUUGAGGUACAAGCUUGUUUGGCAUUUGAAGUUGGGGGAAAUGGGAGAUGCUCAGUGAGACUAUCAGUACCUGUCUCUGAGGGUUAUUAAGAUGGAAGAGCCAAAGGCUCACAUUCUUCUAUGGUAAGUGCUUGUUGUGGUACUUUCCAUGCUUUAUGCAUUGGUCAAAUGUAUAUAUUAGUACAUGCUUU	chr15:75692160-75692493(-)$1	333	71	298	311.0000

#otherMatches

#Struct PSSM
b[cccmmmmccc]bb22ffffff4444iiiiiiiii:::::::ffffff[ccceeeeevvvvvvvvvvvvveeeee22ccc]ffffffJJJJJJJJJJ|||||||DDDD::::dddd[dddd!!cccmmmmccc22dddd]dddd::::::ddddqqqqqqqqdddd::::GGGGGGGYYFFFFFFFFFFFF:::::::::::::gggggggqqqqqqqqggggggg	chr6:168265410-168265705(+)$1	295	63	290	311.0000
{CCCKKEEEEE::ffffffqqqqqqqqffffff:ddddqqqqqqqqdddd:EEEEEYYCCCCCC}DDDDFFFFFFZZZEEEEEYYFFFFFF:eeeeettttttttttteeeee:::FFFFFFKKCCC{CCC::eeeeellleeeee:::::::::eeeee[gggggggooooooggggggg]eeeee:::hhhhhhhhnnnnnhhhhhhhh::::ccccccddddmm	chr15:75692160-75692493(-)$1	333	71	298	311.0000

#DB
(.(((....))).))..))))))....))))))))).......((((((.((((((((.............)))))..))).)))))))))))))))).......))))....((((.((((..(((....)))..)))).))))......((((........))))....)))))))..)))))))))))).............(((((((........)))))))	chr6:168265410-168265705(+)$1	1	63	290	311.0000
.(((..(((((..((((((........)))))).((((........)))).)))))..)))))).))))))))))...)))))..)))))).(((((...........)))))...((((((..(((.(((..(((((...))))).........(((((.(((((((......))))))).)))))...((((((((.....))))))))....((((((((((..	chr15:75692160-75692493(-)$1	1	71	298	311.0000

#PSSM
A : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	

#score	622.0
#seq	2
#width	227
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_UTR_m2_run2.nuc.txt

#NT
uuucu	chr4:1386081-1386329(+)$1	248	59	64	15.0000
UUUCU	chr11:6635106-6635387(-)$1	281	146	151	15.0000
UUUCU	chr2:85547919-85548195(-)$1	276	28	33	15.0000
UUUCU	chr9:116169969-116170304(-)$1	335	108	113	15.0000
UUUCU	chr1:91966560-91966837(+)$1	277	20	25	15.0000
UUUCU	chr7:141464802-141465054(+)$1	252	97	102	15.0000
UUUCU	chr19:54377776-54378028(+)$1	252	33	38	15.0000
UUUCU	chr6:7282393-7282718(-)$1	325	90	95	15.0000
UUUCU	chr16:23585162-23585419(+)$1	257	202	207	15.0000
UUUCU	chr2:71214961-71215314(-)$1	353	14	19	15.0000
UUUCU	chr2:85547651-85547884(-)$1	233	183	188	15.0000
UUUCU	chr12:75896667-75897036(-)$1	369	71	76	15.0000
UUUCU	chr6:131203615-131203890(-)$1	275	109	114	15.0000
UUUCU	chr19:54645273-54645522(+)$1	249	155	160	15.0000
UUUCU	chr19:54377741-54377976(+)$1	235	68	73	15.0000
UUUCU	chr2:128495069-128495372(-)$1	303	118	123	15.0000
UUUCU	chr2:85547684-85547939(-)$1	255	17	22	15.0000
UUUCU	chr2:85547099-85547342(-)$1	243	48	53	15.0000
uuucu	chr4:1386589-1386824(+)$1	235	210	215	15.0000
UUUCU	chr7:143003007-143003252(+)$1	245	44	49	15.0000
uuucu	chr4:1385457-1385724(+)$1	267	15	20	15.0000
UUUCU	chr6:7282275-7282593(-)$1	318	17	22	15.0000
UUUCU	chr2:85548214-85548444(-)$1	230	217	222	15.0000
uuucu	chr4:1386705-1386966(+)$1	261	94	99	15.0000
uuucu	chr5:177655042-177655400(-)$1	358	97	102	15.0000
UUUCU	chr16:23584998-23585248(+)$1	250	133	138	15.0000
uuucu	chr19:56188028-56188300(+)$1	272	116	121	15.0000
uuucu	chr2:176791610-176791897(-)$1	287	38	43	15.0000
uuucu	chr4:1386520-1386789(+)$1	269	26	31	15.0000
uuucu	chr4:1386200-1386460(+)$1	260	33	38	15.0000
uuucu	chr2:240898943-240899332(-)$1	389	107	112	15.0000
UUUCU	chr1:91966696-91966938(+)$1	242	166	171	15.0000
uuucu	chr12:66250228-66250485(+)$1	257	123	128	15.0000
UUUCU	chr12:53909697-53909999(-)$1	302	95	100	15.0000
uuucu	chr4:1386402-1386618(+)$1	216	144	149	15.0000
UUUCU	chr3:187897302-187897548(+)$1	246	104	109	15.0000
uuucu	chr19:54378125-54378371(+)$1	246	71	76	15.0000
UUUCU	chr1:113669257-113669621(+)$1	364	316	321	15.0000
UUUCU	chr6:52367689-52367951(-)$1	262	169	174	15.0000
UUUCU	chr1:91967099-91967373(+)$1	274	85	90	15.0000
uuucu	chr4:1385761-1386007(+)$1	246	24	29	15.0000
UUUCU	chrX:40509290-40509632(-)$1	342	113	118	15.0000
UUUCU	chr11:66406180-66406433(+)$1	253	32	37	15.0000
uuucu	chr10:124146443-124146716(+)$1	273	131	136	15.0000
uuucu	chr12:66250141-66250412(+)$1	271	210	215	15.0000
UUUCU	chr3:99569629-99569892(+)$1	263	113	118	15.0000
UUUCU	chr2:85546796-85547045(-)$1	249	45	50	15.0000
uuucu	chr16:58054423-58054813(+)$1	390	249	254	15.0000
uuucu	chr9:71397809-71398106(+)$1	297	91	96	15.0000
UUUCU	chr2:85548130-85548414(-)$1	284	187	192	15.0000
UUUCU	chr19:45911825-45912096(-)$1	271	89	94	15.0000
uuucu	chr4:1386260-1386540(+)$1	280	99	104	15.0000
uuucu	chr2:176791697-176791980(-)$1	283	81	86	15.0000
UUUCU	chr2:85547637-85547851(-)$1	214	150	155	15.0000
uuucu	chr4:1385559-1385789(+)$1	230	19	24	15.0000
UUUCU	chr20:36146435-36146704(-)$1	269	15	20	15.0000
uuucu	chr5:59423279-59423542(-)$1	263	55	60	15.0000
UUUCU	chr12:49330278-49330599(-)$1	321	95	100	15.0000
UUUCU	chr14:76117658-76117919(-)$1	261	46	51	15.0000
UUUCU	chr16:70191101-70191358(+)$1	257	84	89	15.0000
UUUCU	chr2:85547858-85548119(-)$1	261	87	92	15.0000
UUUCU	chr2:85547547-85547809(-)$1	262	108	113	15.0000
UUUCU	chr20:36146708-36146972(-)$1	264	98	103	15.0000
uuucu	chr9:71398139-71398400(+)$1	261	112	117	15.0000
UUUCU	chr12:49330033-49330310(-)$1	277	11	16	15.0000
uuucu	chr19:54377828-54378082(+)$1	254	54	59	15.0000
UUUCU	chr16:23585076-23585338(+)$1	262	55	60	15.0000
UUUCU	chr16:70191185-70191414(+)$1	229	0	5	15.0000
UUUCU	chr4:26323201-26323442(+)$1	241	55	60	15.0000
uuucu	chr2:105964366-105964692(+)$1	326	95	100	15.0000
UUUCU	chr6:146226214-146226479(-)$1	265	40	45	15.0000
UUUCU	chrX:48328258-48328509(-)$1	251	30	35	15.0000
UUUCU	chr7:100164388-100164613(+)$1	225	21	26	15.0000
uuucu	chr2:169721722-169722064(-)$1	342	301	306	15.0000
UUUCU	chr2:85548015-85548248(-)$1	233	21	26	15.0000
UUUCU	chr5:167979512-167979759(-)$1	247	67	72	15.0000
uuucu	chr5:92919062-92919323(+)$1	261	46	51	15.0000
UUUCU	chr17:26937537-26937901(-)$1	364	37	42	15.0000

#otherMatches

#Struct PSSM
mmmbb	chr5:112228337-112228641(-)$1	304	289	294	15.0000
cmmmm	chr4:1386081-1386329(+)$1	248	59	64	15.0000
:::::	chr11:6635106-6635387(-)$1	281	146	151	15.0000
mmddd	chr2:85547919-85548195(-)$1	276	28	33	15.0000
:::::	chr9:116169969-116170304(-)$1	335	108	113	15.0000
dd"""	chr1:91966560-91966837(+)$1	277	20	25	15.0000
[ffff	chr7:141464802-141465054(+)$1	252	97	102	15.0000
)))))	chr19:54377776-54378028(+)$1	252	33	38	15.0000
oeeee	chr6:7282393-7282718(-)$1	325	90	95	15.0000
b333e	chr16:23585162-23585419(+)$1	257	202	207	15.0000
$$eee	chr2:71214961-71215314(-)$1	353	14	19	15.0000
____G	chr2:85547651-85547884(-)$1	233	183	188	15.0000
ndddd	chr12:75896667-75897036(-)$1	369	71	76	15.0000
:::::	chr6:131203615-131203890(-)$1	275	109	114	15.0000
cc333	chr19:54645273-54645522(+)$1	249	155	160	15.0000
ggg::	chr19:54377741-54377976(+)$1	235	68	73	15.0000
444ee	chr2:128495069-128495372(-)$1	303	118	123	15.0000
ooooo	chr2:85547684-85547939(-)$1	255	17	22	15.0000
22ccc	chr2:85547099-85547342(-)$1	243	48	53	15.0000
=====	chr4:1386589-1386824(+)$1	235	210	215	15.0000
G::::	chr7:143003007-143003252(+)$1	245	44	49	15.0000
ggsss	chr4:1385457-1385724(+)$1	267	15	20	15.0000
PPPPP	chr6:7282275-7282593(-)$1	318	17	22	15.0000
88888	chr2:85548214-85548444(-)$1	230	217	222	15.0000
=====	chr4:1386705-1386966(+)$1	261	94	99	15.0000
C::::	chr5:177655042-177655400(-)$1	358	97	102	15.0000
=====	chr16:23584998-23585248(+)$1	250	133	138	15.0000
+++++	chr19:56188028-56188300(+)$1	272	116	121	15.0000
"""a[	chr2:176791610-176791897(-)$1	287	38	43	15.0000
:::::	chr4:1386520-1386789(+)$1	269	26	31	15.0000
nnndd	chr4:1386200-1386460(+)$1	260	33	38	15.0000
:::::	chr2:240898943-240899332(-)$1	389	107	112	15.0000
wwwww	chr1:91966696-91966938(+)$1	242	166	171	15.0000
IIIII	chr12:66250228-66250485(+)$1	257	123	128	15.0000
:::::	chr12:53909697-53909999(-)$1	302	95	100	15.0000
fffff	chr4:1386402-1386618(+)$1	216	144	149	15.0000
=====	chr3:187897302-187897548(+)$1	246	104	109	15.0000
^^^^^	chr19:54378125-54378371(+)$1	246	71	76	15.0000
qeeee	chr1:113669257-113669621(+)$1	364	316	321	15.0000
:::::	chr6:52367689-52367951(-)$1	262	169	174	15.0000
::::C	chr1:91967099-91967373(+)$1	274	85	90	15.0000
:::::	chr4:1385761-1386007(+)$1	246	24	29	15.0000
MMMMD	chrX:40509290-40509632(-)$1	342	113	118	15.0000
DDDD{	chr11:66406180-66406433(+)$1	253	32	37	15.0000
xxxxx	chr10:124146443-124146716(+)$1	273	131	136	15.0000
DDDBB	chr12:66250141-66250412(+)$1	271	210	215	15.0000
nnnnn	chr3:99569629-99569892(+)$1	263	113	118	15.0000
:::::	chr2:85546796-85547045(-)$1	249	45	50	15.0000
^^^^^	chr16:58054423-58054813(+)$1	390	249	254	15.0000
:::::	chr9:71397809-71398106(+)$1	297	91	96	15.0000
88888	chr2:85548130-85548414(-)$1	284	187	192	15.0000
qqqqq	chr19:45911825-45912096(-)$1	271	89	94	15.0000
00000	chr4:1386260-1386540(+)$1	280	99	104	15.0000
::HHH	chr2:176791697-176791980(-)$1	283	81	86	15.0000
nnnnc	chr2:85547637-85547851(-)$1	214	150	155	15.0000
nnnnn	chr4:1385559-1385789(+)$1	230	19	24	15.0000
HHHH{	chr20:36146435-36146704(-)$1	269	15	20	15.0000
(((((	chr5:59423279-59423542(-)$1	263	55	60	15.0000
foooo	chr12:49330278-49330599(-)$1	321	95	100	15.0000
ooooo	chr14:76117658-76117919(-)$1	261	46	51	15.0000
ooooo	chr16:70191101-70191358(+)$1	257	84	89	15.0000
dd"""	chr2:85547858-85548119(-)$1	261	87	92	15.0000
FF}CC	chr2:85547547-85547809(-)$1	262	108	113	15.0000
:::::	chr20:36146708-36146972(-)$1	264	98	103	15.0000
$$$$d	chr9:71398139-71398400(+)$1	261	112	117	15.0000
::JJJ	chr12:49330033-49330310(-)$1	277	11	16	15.0000
:::::	chr19:54377828-54378082(+)$1	254	54	59	15.0000
=====	chr16:23585076-23585338(+)$1	262	55	60	15.0000
:::::	chr16:70191185-70191414(+)$1	229	0	5	15.0000
rrrre	chr4:26323201-26323442(+)$1	241	55	60	15.0000
:::::	chr2:105964366-105964692(+)$1	326	95	100	15.0000
:::::	chr6:146226214-146226479(-)$1	265	40	45	15.0000
&&&ff	chrX:48328258-48328509(-)$1	251	30	35	15.0000
:::::	chr7:100164388-100164613(+)$1	225	21	26	15.0000
ddnnn	chr2:169721722-169722064(-)$1	342	301	306	15.0000
:::EE	chr2:85548015-85548248(-)$1	233	21	26	15.0000
"gggg	chr5:167979512-167979759(-)$1	247	67	72	15.0000
:::::	chr5:92919062-92919323(+)$1	261	46	51	15.0000
:::::	chr17:26937537-26937901(-)$1	364	37	42	15.0000

#DB
...))	chr5:112228337-112228641(-)$1	1	289	294	15.0000
(....	chr4:1386081-1386329(+)$1	1	59	64	15.0000
.....	chr11:6635106-6635387(-)$1	1	146	151	15.0000
..)))	chr2:85547919-85548195(-)$1	1	28	33	15.0000
.....	chr9:116169969-116170304(-)$1	1	108	113	15.0000
((...	chr1:91966560-91966837(+)$1	1	20	25	15.0000
.((((	chr7:141464802-141465054(+)$1	1	97	102	15.0000
.....	chr19:54377776-54378028(+)$1	1	33	38	15.0000
.))))	chr6:7282393-7282718(-)$1	1	90	95	15.0000
)...)	chr16:23585162-23585419(+)$1	1	202	207	15.0000
..(((	chr2:71214961-71215314(-)$1	1	14	19	15.0000
....)	chr2:85547651-85547884(-)$1	1	183	188	15.0000
.))))	chr12:75896667-75897036(-)$1	1	71	76	15.0000
.....	chr6:131203615-131203890(-)$1	1	109	114	15.0000
))...	chr19:54645273-54645522(+)$1	1	155	160	15.0000
)))..	chr19:54377741-54377976(+)$1	1	68	73	15.0000
...))	chr2:128495069-128495372(-)$1	1	118	123	15.0000
.....	chr2:85547684-85547939(-)$1	1	17	22	15.0000
..)))	chr2:85547099-85547342(-)$1	1	48	53	15.0000
)))))	chr4:1386589-1386824(+)$1	1	210	215	15.0000
(....	chr7:143003007-143003252(+)$1	1	44	49	15.0000
((...	chr4:1385457-1385724(+)$1	1	15	20	15.0000
.....	chr6:7282275-7282593(-)$1	1	17	22	15.0000
.....	chr2:85548214-85548444(-)$1	1	217	222	15.0000
)))))	chr4:1386705-1386966(+)$1	1	94	99	15.0000
(....	chr5:177655042-177655400(-)$1	1	97	102	15.0000
(((((	chr16:23584998-23585248(+)$1	1	133	138	15.0000
.....	chr19:56188028-56188300(+)$1	1	116	121	15.0000
...(.	chr2:176791610-176791897(-)$1	1	38	43	15.0000
.....	chr4:1386520-1386789(+)$1	1	26	31	15.0000
...))	chr4:1386200-1386460(+)$1	1	33	38	15.0000
.....	chr2:240898943-240899332(-)$1	1	107	112	15.0000
.....	chr1:91966696-91966938(+)$1	1	166	171	15.0000
(((((	chr12:66250228-66250485(+)$1	1	123	128	15.0000
.....	chr12:53909697-53909999(-)$1	1	95	100	15.0000
)))))	chr4:1386402-1386618(+)$1	1	144	149	15.0000
(((((	chr3:187897302-187897548(+)$1	1	104	109	15.0000
.....	chr19:54378125-54378371(+)$1	1	71	76	15.0000
.))))	chr1:113669257-113669621(+)$1	1	316	321	15.0000
.....	chr6:52367689-52367951(-)$1	1	169	174	15.0000
....(	chr1:91967099-91967373(+)$1	1	85	90	15.0000
.....	chr4:1385761-1386007(+)$1	1	24	29	15.0000
....(	chrX:40509290-40509632(-)$1	1	113	118	15.0000
((((.	chr11:66406180-66406433(+)$1	1	32	37	15.0000
.....	chr10:124146443-124146716(+)$1	1	131	136	15.0000
)))))	chr12:66250141-66250412(+)$1	1	210	215	15.0000
.....	chr3:99569629-99569892(+)$1	1	113	118	15.0000
.....	chr2:85546796-85547045(-)$1	1	45	50	15.0000
.....	chr16:58054423-58054813(+)$1	1	249	254	15.0000
.....	chr9:71397809-71398106(+)$1	1	91	96	15.0000
.....	chr2:85548130-85548414(-)$1	1	187	192	15.0000
.....	chr19:45911825-45912096(-)$1	1	89	94	15.0000
.....	chr4:1386260-1386540(+)$1	1	99	104	15.0000
..(((	chr2:176791697-176791980(-)$1	1	81	86	15.0000
....)	chr2:85547637-85547851(-)$1	1	150	155	15.0000
.....	chr4:1385559-1385789(+)$1	1	19	24	15.0000
((((.	chr20:36146435-36146704(-)$1	1	15	20	15.0000
.....	chr5:59423279-59423542(-)$1	1	55	60	15.0000
(....	chr12:49330278-49330599(-)$1	1	95	100	15.0000
.....	chr14:76117658-76117919(-)$1	1	46	51	15.0000
.....	chr16:70191101-70191358(+)$1	1	84	89	15.0000
((...	chr2:85547858-85548119(-)$1	1	87	92	15.0000
)).))	chr2:85547547-85547809(-)$1	1	108	113	15.0000
.....	chr20:36146708-36146972(-)$1	1	98	103	15.0000
....(	chr9:71398139-71398400(+)$1	1	112	117	15.0000
..(((	chr12:49330033-49330310(-)$1	1	11	16	15.0000
.....	chr19:54377828-54378082(+)$1	1	54	59	15.0000
(((((	chr16:23585076-23585338(+)$1	1	55	60	15.0000
.....	chr16:70191185-70191414(+)$1	1	0	5	15.0000
....)	chr4:26323201-26323442(+)$1	1	55	60	15.0000
.....	chr2:105964366-105964692(+)$1	1	95	100	15.0000
.....	chr6:146226214-146226479(-)$1	1	40	45	15.0000
...((	chrX:48328258-48328509(-)$1	1	30	35	15.0000
.....	chr7:100164388-100164613(+)$1	1	21	26	15.0000
((...	chr2:169721722-169722064(-)$1	1	301	306	15.0000
...((	chr2:85548015-85548248(-)$1	1	21	26	15.0000
.((((	chr5:167979512-167979759(-)$1	1	67	72	15.0000
.....	chr5:92919062-92919323(+)$1	1	46	51	15.0000
.....	chr17:26937537-26937901(-)$1	1	37	42	15.0000

#PSSM
U : 0.65	u : 0.34	
U : 0.65	u : 0.34	
U : 0.65	u : 0.34	
C : 0.65	c : 0.34	
U : 0.65	u : 0.34	

#score	1185.0
#seq	79
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_transcript_m1_run2.nuc.txt

#NT
UUUAUUUUUUA	chr1:155110875-155111156(+)$1	281	74	85	18.8333
UUUUUUGUUGU	chr10:15254202-15254507(-)$1	305	133	144	19.2037
UUUAUUCUUGU	chrX:153664323-153664599(+)$1	276	202	213	20.3148
UUUUUUUUUCU	chr7:127231375-127231673(+)$1	298	261	272	20.8703
UAUAGUUUUGU	chr16:18803090-18803331(-)$1	241	20	31	16.5185
UUUAUUUUUGU	chr1:11979783-11980073(-)$1	290	92	103	24.5740
UUUAUUUUUGC	chr19:11244122-11244417(+)$1	295	102	113	20.4074
GUUUUUUUUGU	chr13:96446835-96447098(+)$1	263	30	41	19.0185
UUUCUUUUUAU	chr19:10800347-10800566(+)$1	219	98	109	19.5740
uuuuuuuuuuu	chr12:56510887-56511095(+)$1	208	35	46	21.7037
UUUAUUUUUGU	chr14:21558159-21558410(-)$1	251	27	38	24.5740
UUAAUUUGUGU	chr5:137088291-137088556(-)$1	265	24	35	15.4999
UGUUUUUUUGU	chr12:57647614-57647869(-)$1	255	243	254	19.4814
UCUAuuuuuuu	chr20:309133-309414(+)$1	281	24	35	19.0185
UUUAUAUAUGU	chr6:142767121-142767342(+)$1	221	9	20	15.3148
UUUAUUUUUGU	chr4:83739897-83740134(-)$1	237	82	93	24.5740
UUUUUUUUUUU	chrX:102930515-102930776(-)$1	261	92	103	21.7037
UUUUUUUUUGA	chr19:39220843-39221106(+)$1	263	228	239	19.2962
UAUAUUUUUGU	chr1:100548694-100548964(+)$1	270	22	33	20.6851
Uuuauuguuau	chr17:4636856-4637100(-)$1	244	200	211	17.7222
uuuuuuuuuuu	chr11:62360767-62361000(-)$1	233	62	73	21.7037
AUGAUUUUUGU	chr1:154554734-154554981(-)$1	247	141	152	15.7777
UUUACUUUUCU	chr17:53470265-53470527(-)$1	262	17	28	17.8148
uuuauuuuuuu	chr11:64035042-64035258(+)$1	216	93	104	22.9074
UUUAUUUUUUG	chr17:4848940-4849218(-)$1	278	98	109	18.7407
UUUUGUUUUGU	chr20:48740686-48740938(-)$1	252	84	95	19.2037
AUUAUUUUUCU	chr10:54076626-54076906(+)$1	280	189	200	17.9074
UUUAUUCUUCU	chr2:21224472-21224698(-)$1	226	117	128	17.8148
UUUAUUAUUUU	chr6:31807266-31807549(+)$1	283	38	49	18.5555
ACUAUUUUUGU	chr20:30252403-30252634(-)$1	231	109	120	16.5185
UUAAUUGUUGU	chr7:26231547-26231801(-)$1	254	87	98	15.8703
UCUAUUUUUGG	chr16:54317210-54317568(-)$1	358	308	319	16.5185
UUUAUGUUUGU	chr15:44063398-44063640(+)$1	242	210	221	19.8518
UUUAUUUUUUA	chr3:51426499-51426710(+)$1	211	95	106	18.8333
UUUUGUUUUGU	chr19:1258764-1258993(+)$1	229	4	15	19.2037
uuuuuuuuuuu	chr19:13054888-13055106(+)$1	218	15	26	21.7037
UUUUUUUUUGU	chr12:106632219-106632430(-)$1	211	47	58	23.3703
UGUUUUUUUGU	chr7:2704091-2704315(+)$1	224	191	202	19.4814
UUUCCUUUUGU	chr19:39967130-39967371(+)$1	241	18	29	17.9999
uuuaauuuuau	chr1:29474184-29474431(-)$1	247	91	102	17.5370
UAUAUUUUUGC	chr8:21939769-21940011(+)$1	242	143	154	16.5185
UUUUUUUUUCU	chr10:5019830-5020084(+)$1	254	42	53	20.8703
UUUCuuuuuuu	chr3:128338790-128339078(-)$1	288	3	14	20.5925
UUUAUUUUUGU	chr4:83739850-83740071(-)$1	221	19	30	24.5740
UUUCUUUCUGU	chr20:24943563-24943852(-)$1	289	20	31	17.8148
Cuucuuuuugu	chr19:11244242-11244547(+)$1	305	291	302	17.9999
uguguuuuugu	chr19:54697282-54697562(+)$1	280	114	125	18.0925
UUUAUUUUAUU	chr19:811527-811746(+)$1	219	87	98	18.1851
UUUAUUUCUGU	chrX:153664680-153664909(+)$1	229	28	39	20.1296
UUUAUUUUUGU	chr4:83739871-83740097(-)$1	226	45	56	24.5740
uuuuuuuuuuu	chr7:148700597-148700857(-)$1	260	76	87	21.7037
uuuuuuuuuuu	chr1:22357440-22357739(+)$1	299	80	91	21.7037
CUUUUUUUUGU	chr14:50050236-50050494(-)$1	258	31	42	19.1111

#otherMatches

#Struct PSSM
======:::::	chr19:2233585-2233842(-)$1	257	86	97	17.2592
===========	chr1:155110875-155111156(+)$1	281	74	85	18.8333
qqqqqqbb333	chr10:15254202-15254507(-)$1	305	133	144	19.2037
f0000000000	chrX:153664323-153664599(+)$1	276	202	213	20.3148
@@@@@@@@@@@	chr7:127231375-127231673(+)$1	298	261	272	20.8703
gg[eeeeelll	chr16:18803090-18803331(-)$1	241	20	31	16.5185
=qqqqqqqq==	chr1:11979783-11980073(-)$1	290	92	103	24.5740
2ffffff]ddd	chr19:11244122-11244417(+)$1	295	102	113	20.4074
^^^^^^^^^^^	chr13:96446835-96447098(+)$1	263	30	41	19.0185
ggggggg"""f	chr19:10800347-10800566(+)$1	219	98	109	19.5740
ffff+++++++	chr12:56510887-56511095(+)$1	208	35	46	21.7037
:::::::::::	chr14:21558159-21558410(-)$1	251	27	38	24.5740
:::::::::ee	chr5:137088291-137088556(-)$1	265	24	35	15.4999
}EEEEEFFFFF	chr12:57647614-57647869(-)$1	255	243	254	19.4814
eeccc======	chr20:309133-309414(+)$1	281	24	35	19.0185
JJJJJJLLLDD	chr6:142767121-142767342(+)$1	221	9	20	15.3148
d::::::::::	chr4:83739897-83740134(-)$1	237	82	93	24.5740
:::::::::::	chrX:102930515-102930776(-)$1	261	92	103	21.7037
@@@CCC~~~~C	chr19:39220843-39221106(+)$1	263	228	239	19.2962
ffffiiiiiii	chr1:100548694-100548964(+)$1	270	22	33	20.6851
mmbb22dddd2	chr17:4636856-4637100(-)$1	244	200	211	17.7222
:::::::::::	chr11:62360767-62361000(-)$1	233	62	73	21.7037
===========	chr1:154554734-154554981(-)$1	247	141	152	15.7777
PPPFFFFFF::	chr17:53470265-53470527(-)$1	262	17	28	17.8148
2ccc>>>>>>>	chr11:64035042-64035258(+)$1	216	93	104	22.9074
:::::::::dd	chr17:4848940-4849218(-)$1	278	98	109	18.7407
===####ffff	chr20:48740686-48740938(-)$1	252	84	95	19.2037
22eeeee6666	chr10:54076626-54076906(+)$1	280	189	200	17.9074
wwwwwwwgggg	chr2:21224472-21224698(-)$1	226	117	128	17.8148
+++++++++++	chr6:31807266-31807549(+)$1	283	38	49	18.5555
>>>>>>>>ccc	chr20:30252403-30252634(-)$1	231	109	120	16.5185
ffff22bb:::	chr7:26231547-26231801(-)$1	254	87	98	15.8703
d55555eeeee	chr16:54317210-54317568(-)$1	358	308	319	16.5185
]hhhhhhhhEE	chr15:44063398-44063640(+)$1	242	210	221	19.8518
oooooobb]dd	chr3:51426499-51426710(+)$1	211	95	106	18.8333
iiiiiiiii[e	chr19:1258764-1258993(+)$1	229	4	15	19.2037
:::::::::::	chr19:13054888-13055106(+)$1	218	15	26	21.7037
:::::::::cc	chr12:106632219-106632430(-)$1	211	47	58	23.3703
::::::ddddo	chr7:2704091-2704315(+)$1	224	191	202	19.4814
wwwwwwwwwww	chr19:39967130-39967371(+)$1	241	18	29	17.9999
oooffffff::	chr1:29474184-29474431(-)$1	247	91	102	17.5370
eeeee::::::	chr8:21939769-21940011(+)$1	242	143	154	16.5185
+++++++++++	chr10:5019830-5020084(+)$1	254	42	53	20.8703
===========	chr3:128338790-128339078(-)$1	288	3	14	20.5925
dddd[======	chr4:83739850-83740071(-)$1	221	19	30	24.5740
]iiiiiiiii:	chr20:24943563-24943852(-)$1	289	20	31	17.8148
~~~~GGGGGGG	chr19:11244242-11244547(+)$1	305	291	302	17.9999
cdddd####dd	chr19:54697282-54697562(+)$1	280	114	125	18.0925
g::::::::hh	chr19:811527-811746(+)$1	219	87	98	18.1851
qqgggggggHH	chrX:153664680-153664909(+)$1	229	28	39	20.1296
dddd[======	chr4:83739871-83740097(-)$1	226	45	56	24.5740
:::::::::::	chr7:148700597-148700857(-)$1	260	76	87	21.7037
HHH::::::::	chr1:22357440-22357739(+)$1	299	80	91	21.7037
:::::::::::	chr14:50050236-50050494(-)$1	258	31	42	19.1111

#DB
)))))).....	chr19:2233585-2233842(-)$1	1	86	97	17.2592
)))))))))))	chr1:155110875-155111156(+)$1	1	74	85	18.8333
......))...	chr10:15254202-15254507(-)$1	1	133	144	19.2037
)..........	chrX:153664323-153664599(+)$1	1	202	213	20.3148
...........	chr7:127231375-127231673(+)$1	1	261	272	20.8703
((.(((((...	chr16:18803090-18803331(-)$1	1	20	31	16.5185
(........))	chr1:11979783-11980073(-)$1	1	92	103	24.5740
.)))))).)))	chr19:11244122-11244417(+)$1	1	102	113	20.4074
...........	chr13:96446835-96447098(+)$1	1	30	41	19.0185
(((((((...(	chr19:10800347-10800566(+)$1	1	98	109	19.5740
((((.......	chr12:56510887-56511095(+)$1	1	35	46	21.7037
...........	chr14:21558159-21558410(-)$1	1	27	38	24.5740
.........((	chr5:137088291-137088556(-)$1	1	24	35	15.4999
.))))))))))	chr12:57647614-57647869(-)$1	1	243	254	19.4814
(((((((((((	chr20:309133-309414(+)$1	1	24	35	19.0185
((((((...((	chr6:142767121-142767342(+)$1	1	9	20	15.3148
)..........	chr4:83739897-83740134(-)$1	1	82	93	24.5740
...........	chrX:102930515-102930776(-)$1	1	92	103	21.7037
...)))....)	chr19:39220843-39221106(+)$1	1	228	239	19.2962
(((((((((((	chr1:100548694-100548964(+)$1	1	22	33	20.6851
..))..)))).	chr17:4636856-4637100(-)$1	1	200	211	17.7222
...........	chr11:62360767-62361000(-)$1	1	62	73	21.7037
(((((((((((	chr1:154554734-154554981(-)$1	1	141	152	15.7777
...((((((..	chr17:53470265-53470527(-)$1	1	17	28	17.8148
.))).......	chr11:64035042-64035258(+)$1	1	93	104	22.9074
.........((	chr17:4848940-4849218(-)$1	1	98	109	18.7407
(((....((((	chr20:48740686-48740938(-)$1	1	84	95	19.2037
..)))))....	chr10:54076626-54076906(+)$1	1	189	200	17.9074
.......))))	chr2:21224472-21224698(-)$1	1	117	128	17.8148
...........	chr6:31807266-31807549(+)$1	1	38	49	18.5555
........)))	chr20:30252403-30252634(-)$1	1	109	120	16.5185
))))..))...	chr7:26231547-26231801(-)$1	1	87	98	15.8703
).....)))))	chr16:54317210-54317568(-)$1	1	308	319	16.5185
.))))))))))	chr15:44063398-44063640(+)$1	1	210	221	19.8518
......)).))	chr3:51426499-51426710(+)$1	1	95	106	18.8333
(((((((((.(	chr19:1258764-1258993(+)$1	1	4	15	19.2037
...........	chr19:13054888-13055106(+)$1	1	15	26	21.7037
.........((	chr12:106632219-106632430(-)$1	1	47	58	23.3703
......((((.	chr7:2704091-2704315(+)$1	1	191	202	19.4814
...........	chr19:39967130-39967371(+)$1	1	18	29	17.9999
...))))))..	chr1:29474184-29474431(-)$1	1	91	102	17.5370
)))))......	chr8:21939769-21940011(+)$1	1	143	154	16.5185
...........	chr10:5019830-5020084(+)$1	1	42	53	20.8703
(((((((((((	chr3:128338790-128339078(-)$1	1	3	14	20.5925
((((.((((((	chr4:83739850-83740071(-)$1	1	19	30	24.5740
.))))))))).	chr20:24943563-24943852(-)$1	1	20	31	17.8148
....)))))))	chr19:11244242-11244547(+)$1	1	291	302	17.9999
)((((....((	chr19:54697282-54697562(+)$1	1	114	125	18.0925
)........((	chr19:811527-811746(+)$1	1	87	98	18.1851
..)))))))((	chrX:153664680-153664909(+)$1	1	28	39	20.1296
((((.((((((	chr4:83739871-83740097(-)$1	1	45	56	24.5740
...........	chr7:148700597-148700857(-)$1	1	76	87	21.7037
(((........	chr1:22357440-22357739(+)$1	1	80	91	21.7037
...........	chr14:50050236-50050494(-)$1	1	31	42	19.1111

#PSSM
U : 0.72	u : 0.16	A : 0.05	C : 0.03	G : 0.01	
U : 0.64	u : 0.18	A : 0.05	C : 0.05	G : 0.03	g : 0.01	
U : 0.74	u : 0.20	A : 0.03	G : 0.01	
A : 0.49	U : 0.22	u : 0.09	C : 0.07	a : 0.05	g : 0.03	c : 0.01	
U : 0.66	u : 0.22	G : 0.05	C : 0.03	a : 0.01	
U : 0.72	u : 0.24	A : 0.01	G : 0.01	
U : 0.66	u : 0.22	G : 0.03	C : 0.03	g : 0.01	A : 0.01	
U : 0.68	u : 0.24	C : 0.03	G : 0.01	A : 0.01	
U : 0.74	u : 0.22	g : 0.01	A : 0.01	
G : 0.53	u : 0.14	U : 0.11	C : 0.09	g : 0.05	a : 0.03	A : 0.01	
U : 0.62	u : 0.24	A : 0.05	C : 0.03	G : 0.03	

#score	1055.3333333333326
#seq	54
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_CDS_m1_run1.nuc.txt

#NT
CCCAGCUC	chr16:31501541-31501787(-)$1	246	2	10	16.4218
CCCAGCCC	chr19:1474705-1474955(-)$1	250	20	28	20.0937
CCCUGCCC	chr1:150238391-150238660(-)$1	269	31	39	16.1875
CCCAGCUC	chr11:60703187-60703542(+)$1	355	284	292	16.4218
CCCAGCCC	chr12:125262895-125263167(-)$1	272	89	97	20.0937
CCCAGCUC	chr11:60703431-60703743(+)$1	312	40	48	16.4218
ACCAGCCC	chr17:73841807-73842086(-)$1	279	79	87	15.9531
CCCCGCCC	chr5:172362118-172362389(+)$1	271	16	24	16.1093
CACAGCCC	chr1:43200641-43200896(-)$1	255	26	34	15.7187
CCCAGCUC	chr11:63742054-63742338(+)$1	284	6	14	16.4218
CCCAACCC	chr19:51301297-51301634(-)$1	337	30	38	15.9531
CCCAGCAC	chr15:44085986-44086259(+)$1	273	79	87	16.1093
ACCAGCCC	chr1:156219556-156219821(-)$1	265	201	209	15.9531
CCCAGGCC	chr1:183521966-183522233(+)$1	267	232	240	15.9531
UCCAGCCC	chr17:80197179-80197428(+)$1	249	54	62	15.9531
CCCAGCUC	chr22:30824403-30824810(+)$1	407	103	111	16.4218
GCCAGCCC	chr19:1010274-1010562(-)$1	288	49	57	15.8750
CCCUGCCC	chr1:150238465-150238769(-)$1	304	140	148	16.1875
CCCAGCUC	chr16:31501732-31501981(-)$1	249	196	204	16.4218
CCCAGUCC	chr15:89174209-89174464(+)$1	255	118	126	15.6406
CCCUGCCC	chr21:45879744-45879976(+)$1	232	111	119	16.1875
CCCAGCCC	chr20:368692-369010(+)$1	318	77	85	20.0937
CACAGCCC	chr6:34213229-34213478(+)$1	249	115	123	15.7187
CUCAGCCC	chr7:149576619-149576870(+)$1	251	132	140	15.6406
CCCAGCCA	chr22:41972966-41973400(-)$1	434	235	243	15.4062
ACCAGCCC	chr11:63743603-63743867(+)$1	264	222	230	15.9531
CCCAGCCC	chr2:242757636-242757874(+)$1	238	131	139	20.0937
CCCAGCAC	chr15:44085884-44086141(+)$1	257	181	189	16.1093
CCCAGCCC	chr19:39220530-39220799(+)$1	269	15	23	20.0937
UCCAGCCC	chr16:31501308-31501619(-)$1	311	37	45	15.9531
CCCAGGCC	chr22:37865739-37866038(-)$1	299	204	212	15.9531
CCCCGCCC	chr12:120534700-120534953(-)$1	253	56	64	16.1093
UCCAGCCC	chr1:10689817-10690083(+)$1	266	243	251	15.9531
CCCUGCCC	chr3:48511029-48511268(-)$1	239	155	163	16.1875
CUCAGCCC	chr17:79826382-79826635(-)$1	253	53	61	15.6406
CCCAGCCU	chr16:1496289-1496549(-)$1	260	139	147	15.4843
CCCAGGCC	chr9:139735174-139735487(+)$1	313	278	286	15.9531
CCCACCCC	chr3:196730110-196730400(-)$1	290	2	10	16.0312
CACAGCCC	chr19:47778365-47778636(+)$1	271	10	18	15.7187
CCCAUCCC	chr11:64894333-64894591(+)$1	258	68	76	15.7968
CCCAGCCC	chr17:74077990-74078249(-)$1	259	64	72	20.0937
GCCAGCCC	chr11:60704134-60704380(+)$1	246	79	87	15.8750
CCCAGCCU	chr16:1496178-1496430(-)$1	252	20	28	15.4843
CCCAGCUC	chr7:149576355-149576653(+)$1	298	71	79	16.4218
CCCAGCAC	chr15:44086059-44086295(+)$1	236	6	14	16.1093
CCCACCCC	chr17:73314717-73314975(-)$1	258	218	226	16.0312
CCCAGCCC	chr17:79890682-79890974(-)$1	292	66	74	20.0937
CCCAGCCC	chr17:79826444-79826701(-)$1	257	12	20	20.0937
CCAAGCCC	chr18:72187261-72187524(+)$1	263	43	51	15.2500
CCCAGCCC	chr12:120534771-120535031(-)$1	260	24	32	20.0937
cccugccc	chr19:18704278-18704534(-)$1	256	20	28	16.1875
CCCAGCCC	chr8:144103098-144103347(+)$1	249	152	160	20.0937
CCCAGCCC	chr16:31143220-31143488(-)$1	268	22	30	20.0937
CCCAACCC	chr20:61598744-61599040(+)$1	296	110	118	15.9531
CCCCGCCC	chr12:125267129-125267379(-)$1	250	178	186	16.1093
CCCAGCCC	chr16:4738780-4739002(+)$1	222	87	95	20.0937
CCCAGCCC	chr12:125262967-125263217(-)$1	250	139	147	20.0937
CCCAGCCC	chr19:51301522-51301831(-)$1	309	2	10	20.0937
CCCAGGCC	chr11:71146043-71146293(-)$1	250	187	195	15.9531
CCCACCCC	chr19:47341401-47341808(-)$1	407	117	125	16.0312
CCCACCCC	chr16:57416834-57417060(+)$1	226	173	181	16.0312
CCCAGGCC	chr3:52027669-52027940(-)$1	271	147	155	15.9531
CCCAACCC	chr17:1657516-1657758(+)$1	242	141	149	15.9531

#otherMatches

#Struct PSSM
GG}BBZZZ	chr19:4361438-4361717(-)$1	279	132	140	16.1093
::dddd[e	chr16:31501541-31501787(-)$1	246	2	10	16.4218
iiiiii[b	chr19:1474705-1474955(-)$1	250	20	28	20.0937
!eeeee""	chr1:150238391-150238660(-)$1	269	31	39	16.1875
eeeee]cc	chr11:60703187-60703542(+)$1	355	284	292	16.4218
ooooccc:	chr12:125262895-125263167(-)$1	272	89	97	20.0937
bcccdddd	chr11:60703431-60703743(+)$1	312	40	48	16.4218
mmccc]cc	chr17:73841807-73842086(-)$1	279	79	87	15.9531
::::CCC:	chr5:172362118-172362389(+)$1	271	16	24	16.1093
ooccc555	chr1:43200641-43200896(-)$1	255	26	34	15.7187
GGKKDDDD	chr11:63742054-63742338(+)$1	284	6	14	16.4218
oooooeee	chr19:51301297-51301634(-)$1	337	30	38	15.9531
:::eeeee	chr15:44085986-44086259(+)$1	273	79	87	16.1093
baddddbb	chr1:156219556-156219821(-)$1	265	201	209	15.9531
dmmmmddd	chr1:183521966-183522233(+)$1	267	232	240	15.9531
###fffff	chr17:80197179-80197428(+)$1	249	54	62	15.9531
blllbbee	chr22:30824403-30824810(+)$1	407	103	111	16.4218
ggoooooo	chr19:1010274-1010562(-)$1	288	49	57	15.8750
!eeeee""	chr1:150238465-150238769(-)$1	304	140	148	16.1875
fffnnnnn	chr16:31501732-31501981(-)$1	249	196	204	16.4218
ffffff[a	chr15:89174209-89174464(+)$1	255	118	126	15.6406
BCCC}CCC	chr21:45879744-45879976(+)$1	232	111	119	16.1875
mmmmeeee	chr20:368692-369010(+)$1	318	77	85	20.0937
=====!!a	chr6:34213229-34213478(+)$1	249	115	123	15.7187
ggg]ffff	chr7:149576619-149576870(+)$1	251	132	140	15.6406
daccc22a	chr22:41972966-41973400(-)$1	434	235	243	15.4062
BGGGGGGG	chr11:63743603-63743867(+)$1	264	222	230	15.9531
555ccc:d	chr2:242757636-242757874(+)$1	238	131	139	20.0937
oooooocc	chr15:44085884-44086141(+)$1	257	181	189	16.1093
ggggggg:	chr19:39220530-39220799(+)$1	269	15	23	20.0937
gg!!bbcc	chr16:31501308-31501619(-)$1	311	37	45	15.9531
ddcccccc	chr22:37865739-37866038(-)$1	299	204	212	15.9531
::::bb[c	chr12:120534700-120534953(-)$1	253	56	64	16.1093
GGGGBBDD	chr1:10689817-10690083(+)$1	266	243	251	15.9531
""hhhhhh	chr3:48511029-48511268(-)$1	239	155	163	16.1875
GG{DDDDi	chr17:79826382-79826635(-)$1	253	53	61	15.6406
b[dddd%%	chr16:1496289-1496549(-)$1	260	139	147	15.4843
ccc]dddd	chr9:139735174-139735487(+)$1	313	278	286	15.9531
::::::::	chr3:196730110-196730400(-)$1	290	2	10	16.0312
nnnnccc:	chr19:47778365-47778636(+)$1	271	10	18	15.7187
a22eeeee	chr11:64894333-64894591(+)$1	258	68	76	15.7968
333bb22h	chr17:74077990-74078249(-)$1	259	64	72	20.0937
ddd]eeee	chr11:60704134-60704380(+)$1	246	79	87	15.8750
dllldddd	chr16:1496178-1496430(-)$1	252	20	28	15.4843
666666ff	chr7:149576355-149576653(+)$1	298	71	79	16.4218
ccc[ccc!	chr15:44086059-44086295(+)$1	236	6	14	16.1093
CCCCC}A}	chr17:73314717-73314975(-)$1	258	218	226	16.0312
:ccc[ccc	chr17:79890682-79890974(-)$1	292	66	74	20.0937
::DDDD::	chr17:79826444-79826701(-)$1	257	12	20	20.0937
eee:DDDD	chr18:72187261-72187524(+)$1	263	43	51	15.2500
####cccl	chr12:120534771-120535031(-)$1	260	24	32	20.0937
hh[ccc##	chr19:18704278-18704534(-)$1	256	20	28	16.1875
ssssssgg	chr8:144103098-144103347(+)$1	249	152	160	20.0937
::::::::	chr16:31143220-31143488(-)$1	268	22	30	20.0937
cc22dddd	chr20:61598744-61599040(+)$1	296	110	118	15.9531
FFBBDDDD	chr12:125267129-125267379(-)$1	250	178	186	16.1093
:eeeee!!	chr16:4738780-4739002(+)$1	222	87	95	20.0937
~~~~DDDD	chr12:125262967-125263217(-)$1	250	139	147	20.0937
DD{GGGGG	chr19:51301522-51301831(-)$1	309	2	10	20.0937
6666ccc3	chr11:71146043-71146293(-)$1	250	187	195	15.9531
bb%%%%%%	chr19:47341401-47341808(-)$1	407	117	125	16.0312
:bb[eeee	chr16:57416834-57417060(+)$1	226	173	181	16.0312
GGGGGGG:	chr3:52027669-52027940(-)$1	271	147	155	15.9531
!bb'''''	chr17:1657516-1657758(+)$1	242	141	149	15.9531

#DB
)).))...	chr19:4361438-4361717(-)$1	1	132	140	16.1093
..((((.(	chr16:31501541-31501787(-)$1	1	2	10	16.4218
((((((.(	chr19:1474705-1474955(-)$1	1	20	28	20.0937
.(((((..	chr1:150238391-150238660(-)$1	1	31	39	16.1875
))))).))	chr11:60703187-60703542(+)$1	1	284	292	16.4218
....))).	chr12:125262895-125263167(-)$1	1	89	97	20.0937
))))))))	chr11:60703431-60703743(+)$1	1	40	48	16.4218
..))).))	chr17:73841807-73842086(-)$1	1	79	87	15.9531
....(((.	chr5:172362118-172362389(+)$1	1	16	24	16.1093
..)))...	chr1:43200641-43200896(-)$1	1	26	34	15.7187
((..((((	chr11:63742054-63742338(+)$1	1	6	14	16.4218
.....)))	chr19:51301297-51301634(-)$1	1	30	38	15.9531
...(((((	chr15:44085986-44086259(+)$1	1	79	87	16.1093
((((((((	chr1:156219556-156219821(-)$1	1	201	209	15.9531
(....)))	chr1:183521966-183522233(+)$1	1	232	240	15.9531
...(((((	chr17:80197179-80197428(+)$1	1	54	62	15.9531
(...))))	chr22:30824403-30824810(+)$1	1	103	111	16.4218
((......	chr19:1010274-1010562(-)$1	1	49	57	15.8750
.(((((..	chr1:150238465-150238769(-)$1	1	140	148	16.1875
(((.....	chr16:31501732-31501981(-)$1	1	196	204	16.4218
((((((.(	chr15:89174209-89174464(+)$1	1	118	126	15.6406
)))).)))	chr21:45879744-45879976(+)$1	1	111	119	16.1875
....))))	chr20:368692-369010(+)$1	1	77	85	20.0937
(((((..(	chr6:34213229-34213478(+)$1	1	115	123	15.7187
))).))))	chr7:149576619-149576870(+)$1	1	132	140	15.6406
)))))..)	chr22:41972966-41973400(-)$1	1	235	243	15.4062
))))))))	chr11:63743603-63743867(+)$1	1	222	230	15.9531
...))).(	chr2:242757636-242757874(+)$1	1	131	139	20.0937
......))	chr15:44085884-44086141(+)$1	1	181	189	16.1093
))))))).	chr19:39220530-39220799(+)$1	1	15	23	20.0937
((..((((	chr16:31501308-31501619(-)$1	1	37	45	15.9531
))))))))	chr22:37865739-37866038(-)$1	1	204	212	15.9531
....((.(	chr12:120534700-120534953(-)$1	1	56	64	16.1093
))))))))	chr1:10689817-10690083(+)$1	1	243	251	15.9531
..((((((	chr3:48511029-48511268(-)$1	1	155	163	16.1875
((.(((((	chr17:79826382-79826635(-)$1	1	53	61	15.6406
(.((((..	chr16:1496289-1496549(-)$1	1	139	147	15.4843
))).))))	chr9:139735174-139735487(+)$1	1	278	286	15.9531
........	chr3:196730110-196730400(-)$1	1	2	10	16.0312
....))).	chr19:47778365-47778636(+)$1	1	10	18	15.7187
)..)))))	chr11:64894333-64894591(+)$1	1	68	76	15.7968
...))..)	chr17:74077990-74078249(-)$1	1	64	72	20.0937
))).))))	chr11:60704134-60704380(+)$1	1	79	87	15.8750
(...))))	chr16:1496178-1496430(-)$1	1	20	28	15.4843
......))	chr7:149576355-149576653(+)$1	1	71	79	16.4218
(((.(((.	chr15:44086059-44086295(+)$1	1	6	14	16.1093
))))).).	chr17:73314717-73314975(-)$1	1	218	226	16.0312
.(((.(((	chr17:79890682-79890974(-)$1	1	66	74	20.0937
..((((..	chr17:79826444-79826701(-)$1	1	12	20	20.0937
))).((((	chr18:72187261-72187524(+)$1	1	43	51	15.2500
....(((.	chr12:120534771-120535031(-)$1	1	24	32	20.0937
((.(((..	chr19:18704278-18704534(-)$1	1	20	28	16.1875
......))	chr8:144103098-144103347(+)$1	1	152	160	20.0937
........	chr16:31143220-31143488(-)$1	1	22	30	20.0937
))..))))	chr20:61598744-61599040(+)$1	1	110	118	15.9531
))))))))	chr12:125267129-125267379(-)$1	1	178	186	16.1093
.(((((..	chr16:4738780-4739002(+)$1	1	87	95	20.0937
....))))	chr12:125262967-125263217(-)$1	1	139	147	20.0937
((.(((((	chr19:51301522-51301831(-)$1	1	2	10	20.0937
....))).	chr11:71146043-71146293(-)$1	1	187	195	15.9531
((......	chr19:47341401-47341808(-)$1	1	117	125	16.0312
.((.((((	chr16:57416834-57417060(+)$1	1	173	181	16.0312
))))))).	chr3:52027669-52027940(-)$1	1	147	155	15.9531
.((.....	chr17:1657516-1657758(+)$1	1	141	149	15.9531

#PSSM
C : 0.85	A : 0.04	U : 0.04	G : 0.03	c : 0.01	
C : 0.90	A : 0.04	U : 0.03	c : 0.01	
C : 0.96	A : 0.01	c : 0.01	
A : 0.85	C : 0.06	U : 0.06	u : 0.01	
G : 0.85	C : 0.06	A : 0.04	U : 0.01	g : 0.01	
C : 0.89	G : 0.07	U : 0.01	c : 0.01	
C : 0.82	U : 0.10	A : 0.04	c : 0.01	
C : 0.93	U : 0.03	A : 0.01	c : 0.01	

#score	1080.6875
#seq	64
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_transcript_m3_run1.nuc.txt

#NT
GGGUGGGGCCUG	chr21:45562139-45562417(+)$1	278	125	137	16.2777
ggcggggggcgg	chr8:144815569-144815821(-)$1	252	0	12	20.4444
GGGUUGGGGAGG	chr1:6513995-6514260(+)$1	265	124	136	15.5370
ggccgggggcgg	chr16:89895125-89895415(+)$1	290	81	93	18.9629
GGGAGGGGGCAG	chr15:101848805-101849041(-)$1	236	93	105	20.4444
GUGCUGGGGCUG	chr4:1227019-1227246(-)$1	227	115	127	15.2592
GGGGCGGGCCAG	chr2:171572177-171572394(+)$1	217	166	178	16.8333
GGGGAGGGGCCG	chr16:591196-591450(+)$1	254	174	186	20.9999
GGAGAGGGGCCG	chr1:2323484-2323794(+)$1	310	167	179	17.4814
GGGGAGGGGUGG	chr16:590286-590544(+)$1	258	94	106	18.4999
GGGGGUGGGGGG	chr2:242753190-242753465(+)$1	275	104	116	15.3518
GGUUGGGGGCAG	chr13:113351205-113351516(+)$1	311	70	82	16.7407
GGCAGGGGGCUG	chr6:138752916-138753217(-)$1	301	123	135	16.8333
GGGCGGUGGCGG	chr2:227659953-227660188(-)$1	235	111	123	18.1296
gggaaggagcug	chr8:71314982-71315232(-)$1	250	44	56	15.1666
GGGGGGGGGCGG	chr7:157659327-157659610(-)$1	283	79	91	23.9629
GGUGCGGGCCGG	chr21:46876322-46876575(+)$1	253	216	228	14.6111
gcgggggggcgg	chr19:2270796-2271056(+)$1	260	99	111	19.8888
GAUGGGGGGCGG	chr19:954604-954871(+)$1	267	219	231	16.2777
GGGGGUCGGCGG	chr12:132401674-132401929(+)$1	255	231	243	15.1666
GGGGAGGGCCGG	chr16:89359251-89359488(-)$1	237	168	180	19.0555
GGGCUGGGGCAG	chr7:947915-948207(-)$1	292	79	91	19.5185
ggcggggugcgg	chr7:1113156-1113426(-)$1	270	118	130	16.5555
gggguggggcau	chr17:79954981-79955247(+)$1	266	195	207	16.1851
GGGAGGGGGCCG	chr2:219264807-219265082(+)$1	275	87	99	19.7962
gugguggggcag	chr16:50632819-50633081(+)$1	262	10	22	16.8333
GGUGGUGGGCGG	chr2:242661340-242661586(+)$1	246	100	112	16.1851
agggggggccgg	chr1:1821890-1822174(-)$1	284	58	70	15.4444
GGGAAGGGCCAG	chr4:1194693-1194989(-)$1	296	148	160	15.5370
GGGGCAGGGCAG	chr7:157666958-157667205(-)$1	247	88	100	16.3703
AGGCAGGGGCUG	chr21:46878115-46878420(+)$1	305	204	216	15.4444
GGGGAGGGGAGG	chr11:638005-638322(+)$1	317	101	113	18.5925
GGGGUGGUGCUG	chr7:2083267-2083551(-)$1	284	174	186	17.0185
ggggaggggcgg	chr17:74378867-74379161(+)$1	294	136	148	22.9444
GGGCAGGUGCUG	chr17:79958890-79959179(+)$1	289	218	230	16.1851
GGGCCGGGGCAG	chr16:88522100-88522382(+)$1	282	170	182	19.2407
GGAGAGGGGCUG	chr21:47559561-47559814(-)$1	253	113	125	18.0370
GGGGGGGCGCCG	chr6:167412192-167412489(-)$1	297	126	138	18.0370
GAGGUGGGGCUG	chr4:713987-714245(+)$1	258	219	231	16.7407
GGGGAGGGGCUG	chr16:88836367-88836633(-)$1	266	100	112	21.5555
GGGGAGGGGCAG	chr3:12947725-12948015(-)$1	290	119	131	21.6481
ggggaggggggg	chr21:47563057-47563342(-)$1	285	54	66	18.5925
GGAGGAGGGCGG	chr7:77166514-77166809(+)$1	295	48	60	16.0925
ggggaggggcag	chr17:80230605-80230872(-)$1	267	67	79	21.6481
ggacgggUGCGG	chr18:55923056-55923319(+)$1	263	127	139	15.0740
GGGCGGGGGCUG	chr9:139725836-139726112(+)$1	276	132	144	21.0925
GCGCGGGGGCGG	chr2:101436798-101437057(+)$1	259	175	187	18.4074
gggcgggGGCGG	chr9:127020433-127020709(+)$1	276	116	128	22.4814
GGGCGGGCGCCG	chr14:55765185-55765474(+)$1	289	122	134	16.5555
GCGGGGUGGCGG	chr3:128211691-128211981(+)$1	290	150	162	15.5370
gggagggggcag	chr2:242447563-242447868(-)$1	305	48	60	20.4444
gggccggggcgg	chr11:706040-706293(-)$1	253	123	135	20.5370
GGGCUGGCGCGG	chr6:32939758-32939974(+)$1	216	193	205	16.8333

#otherMatches

#Struct PSSM
fff]cccddddD	chr1:2171841-2172116(+)$1	275	90	102	17.2037
e&&&&&&&dddd	chr21:45562139-45562417(+)$1	278	125	137	16.2777
CCCLLLHHHHHH	chr8:144815569-144815821(-)$1	252	0	12	20.4444
ccc]ccc333ee	chr1:6513995-6514260(+)$1	265	124	136	15.5370
$eeeee!!bbll	chr16:89895125-89895415(+)$1	290	81	93	18.9629
ehhhhhhhh!!d	chr15:101848805-101849041(-)$1	236	93	105	20.4444
]a]dddddddd:	chr4:1227019-1227246(-)$1	227	115	127	15.2592
dddd]eeeee]b	chr2:171572177-171572394(+)$1	217	166	178	16.8333
HHHHYYEEEEEG	chr16:591196-591450(+)$1	254	174	186	20.9999
ddd"""bb[eee	chr1:2323484-2323794(+)$1	310	167	179	17.4814
]abb]ccc]ccc	chr16:590286-590544(+)$1	258	94	106	18.4999
##bb[a[bb[dd	chr2:242753190-242753465(+)$1	275	104	116	15.3518
a]cccffffff]	chr13:113351205-113351516(+)$1	311	70	82	16.7407
dHHHHHHHHeee	chr6:138752916-138753217(-)$1	301	123	135	16.8333
hhhhhffffff"	chr2:227659953-227660188(-)$1	235	111	123	18.1296
qqqqqqqqaddd	chr8:71314982-71315232(-)$1	250	44	56	15.1666
22ccc]a]eeee	chr7:157659327-157659610(-)$1	283	79	91	23.9629
EE}AYYCCC}FF	chr21:46876322-46876575(+)$1	253	216	228	14.6111
5hhhhhhhhbb]	chr19:2270796-2271056(+)$1	260	99	111	19.8888
::eeeee!!a""	chr19:954604-954871(+)$1	267	219	231	16.2777
/////BB}DDDD	chr12:132401674-132401929(+)$1	255	231	243	15.1666
e]bb:EEEEE}B	chr16:89359251-89359488(-)$1	237	168	180	19.0555
iiiiiioooooo	chr7:947915-948207(-)$1	292	79	91	19.5185
[a"""eeeeett	chr7:1113156-1113426(-)$1	270	118	130	16.5555
4ggggggg:EEE	chr17:79954981-79955247(+)$1	266	195	207	16.1851
eee[bb[ccc&&	chr2:219264807-219265082(+)$1	275	87	99	19.7962
CCC{BB{CCC{G	chr16:50632819-50633081(+)$1	262	10	22	16.8333
ddd666666ccc	chr2:242661340-242661586(+)$1	246	100	112	16.1851
nnnccc]dddd:	chr1:1821890-1822174(-)$1	284	58	70	15.4444
ddd333dddd::	chr4:1194693-1194989(-)$1	296	148	160	15.5370
F{CCC:::eeee	chr7:157666958-157667205(-)$1	247	88	100	16.3703
eeeCCCEEEEE}	chr21:46878115-46878420(+)$1	305	204	216	15.4444
oooooccc:::b	chr11:638005-638322(+)$1	317	101	113	18.5925
IIII:ffffffc	chr7:2083267-2083551(-)$1	284	174	186	17.0185
MHHHHHHHH:dd	chr17:74378867-74379161(+)$1	294	136	148	22.9444
FFZZZGGGGGGG	chr17:79958890-79959179(+)$1	289	218	230	16.1851
dddeeeeemmmm	chr16:88522100-88522382(+)$1	282	170	182	19.2407
CKKGGGGGGGa[	chr21:47559561-47559814(-)$1	253	113	125	18.0370
llleeeeebb]d	chr6:167412192-167412489(-)$1	297	126	138	18.0370
555dddd]cccD	chr4:713987-714245(+)$1	258	219	231	16.7407
BB{IIIIIIIII	chr16:88836367-88836633(-)$1	266	100	112	21.5555
dd"""ffffff[	chr3:12947725-12948015(-)$1	290	119	131	21.6481
^^^^^^^^^^^^	chr21:47563057-47563342(-)$1	285	54	66	18.5925
&&&&&&gggggg	chr7:77166514-77166809(+)$1	295	48	60	16.0925
ff####dddd""	chr17:80230605-80230872(-)$1	267	67	79	21.6481
DZZZCCC}FFFF	chr18:55923056-55923319(+)$1	263	127	139	15.0740
ee:hhhhhhhh#	chr9:139725836-139726112(+)$1	276	132	144	21.0925
eeeebbffffff	chr2:101436798-101437057(+)$1	259	175	187	18.4074
:HHHHHHHH{A{	chr9:127020433-127020709(+)$1	276	116	128	22.4814
fcccddddoooo	chr14:55765185-55765474(+)$1	289	122	134	16.5555
HH{A{EEEEE{B	chr3:128211691-128211981(+)$1	290	150	162	15.5370
oa22a]dddd::	chr2:242447563-242447868(-)$1	305	48	60	20.4444
fff22hhhhhhh	chr11:706040-706293(-)$1	253	123	135	20.5370
ccCCC}FFFFFF	chr6:32939758-32939974(+)$1	216	193	205	16.8333

#DB
))).)))))))(	chr1:2171841-2172116(+)$1	1	90	102	17.2037
(.......((((	chr21:45562139-45562417(+)$1	1	125	137	16.2777
(((...((((((	chr8:144815569-144815821(-)$1	1	0	12	20.4444
))).)))...))	chr1:6513995-6514260(+)$1	1	124	136	15.5370
.(((((..((..	chr16:89895125-89895415(+)$1	1	81	93	18.9629
)((((((((..(	chr15:101848805-101849041(-)$1	1	93	105	20.4444
.).)))))))).	chr4:1227019-1227246(-)$1	1	115	127	15.2592
)))).))))).)	chr2:171572177-171572394(+)$1	1	166	178	16.8333
))))..))))))	chr16:591196-591450(+)$1	1	174	186	20.9999
(((...((.(((	chr1:2323484-2323794(+)$1	1	167	179	17.4814
.))).))).)))	chr16:590286-590544(+)$1	1	94	106	18.4999
..((.(.((.((	chr2:242753190-242753465(+)$1	1	104	116	15.3518
).))))))))).	chr13:113351205-113351516(+)$1	1	70	82	16.7407
)))))))))(((	chr6:138752916-138753217(-)$1	1	123	135	16.8333
(((((((((((.	chr2:227659953-227660188(-)$1	1	111	123	18.1296
........))))	chr8:71314982-71315232(-)$1	1	44	56	15.1666
..))).).))))	chr7:157659327-157659610(-)$1	1	79	91	23.9629
)).)..))).))	chr21:46876322-46876575(+)$1	1	216	228	14.6111
.)))))))))).	chr19:2270796-2271056(+)$1	1	99	111	19.8888
..(((((..(..	chr19:954604-954871(+)$1	1	219	231	16.2777
.....)).))))	chr12:132401674-132401929(+)$1	1	231	243	15.1666
).)).))))).)	chr16:89359251-89359488(-)$1	1	168	180	19.0555
((((((......	chr7:947915-948207(-)$1	1	79	91	19.5185
.(...(((((..	chr7:1113156-1113426(-)$1	1	118	130	16.5555
.))))))).)))	chr17:79954981-79955247(+)$1	1	195	207	16.1851
(((.((.(((..	chr2:219264807-219265082(+)$1	1	87	99	19.7962
(((.((.(((.(	chr16:50632819-50633081(+)$1	1	10	22	16.8333
)))......)))	chr2:242661340-242661586(+)$1	1	100	112	16.1851
...))).)))).	chr1:1821890-1822174(-)$1	1	58	70	15.4444
)))...))))..	chr4:1194693-1194989(-)$1	1	148	160	15.5370
(.(((...((((	chr7:157666958-157667205(-)$1	1	88	100	16.3703
))))))))))).	chr21:46878115-46878420(+)$1	1	204	216	15.4444
.....)))...(	chr11:638005-638322(+)$1	1	101	113	18.5925
((((.(((((((	chr7:2083267-2083551(-)$1	1	174	186	17.0185
.((((((((.((	chr17:74378867-74379161(+)$1	1	136	148	22.9444
))...)))))))	chr17:79958890-79959179(+)$1	1	218	230	16.1851
((((((((....	chr16:88522100-88522382(+)$1	1	170	182	19.2407
(..((((((((.	chr21:47559561-47559814(-)$1	1	113	125	18.0370
...))))))).)	chr6:167412192-167412489(-)$1	1	126	138	18.0370
...)))).))))	chr4:713987-714245(+)$1	1	219	231	16.7407
((.(((((((((	chr16:88836367-88836633(-)$1	1	100	112	21.5555
((...((((((.	chr3:12947725-12948015(-)$1	1	119	131	21.6481
............	chr21:47563057-47563342(-)$1	1	54	66	18.5925
......((((((	chr7:77166514-77166809(+)$1	1	48	60	16.0925
((....((((..	chr17:80230605-80230872(-)$1	1	67	79	21.6481
)...))).))))	chr18:55923056-55923319(+)$1	1	127	139	15.0740
)).((((((((.	chr9:139725836-139726112(+)$1	1	132	144	21.0925
))))))))))))	chr2:101436798-101437057(+)$1	1	175	187	18.4074
.((((((((.(.	chr9:127020433-127020709(+)$1	1	116	128	22.4814
)(((((((....	chr14:55765185-55765474(+)$1	1	122	134	16.5555
((.(.(((((.(	chr3:128211691-128211981(+)$1	1	150	162	15.5370
.)..).))))..	chr2:242447563-242447868(-)$1	1	48	60	20.4444
)))..)))))))	chr11:706040-706293(-)$1	1	123	135	20.5370
))))).))))))	chr6:32939758-32939974(+)$1	1	193	205	16.8333

#PSSM
G : 0.70	g : 0.25	a : 0.01	A : 0.01	
G : 0.62	g : 0.24	A : 0.03	C : 0.03	U : 0.01	c : 0.01	u : 0.01	
G : 0.57	g : 0.20	U : 0.07	c : 0.05	A : 0.05	C : 0.01	a : 0.01	
G : 0.38	C : 0.18	g : 0.16	U : 0.07	c : 0.07	A : 0.07	a : 0.03	
G : 0.33	A : 0.20	g : 0.14	U : 0.11	C : 0.07	a : 0.07	u : 0.03	c : 0.01	
G : 0.62	g : 0.27	U : 0.05	A : 0.03	
G : 0.64	g : 0.27	U : 0.05	C : 0.01	
G : 0.64	g : 0.20	U : 0.05	C : 0.05	a : 0.01	u : 0.01	
G : 0.66	g : 0.22	C : 0.09	c : 0.01	
C : 0.68	c : 0.22	A : 0.03	U : 0.01	G : 0.01	g : 0.01	
G : 0.33	U : 0.18	g : 0.14	A : 0.14	C : 0.09	a : 0.07	u : 0.01	
G : 0.75	g : 0.22	u : 0.01	

#score	970.2962962962961
#seq	54
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_CDS_m1_run2.nuc.txt

#NT
ugg	chr3:196295789-196296102(+)$1	313	56	59	9.0000
UGG	chr2:74691996-74692401(-)$1	405	28	31	9.0000
UGG	chr2:10583335-10583540(-)$1	205	4	7	9.0000
UGG	chr4:48343876-48344125(+)$1	249	11	14	9.0000
UGG	chr6:32940765-32940973(+)$1	208	11	14	9.0000
UGG	chr17:1552925-1553197(-)$1	272	20	23	9.0000
UGG	chr1:1689651-1689926(-)$1	275	6	9	9.0000
UGG	chr19:8550849-8551139(+)$1	290	1	4	9.0000
UGG	chr17:80788533-80788836(+)$1	303	6	9	9.0000
UGG	chr7:6075407-6075693(-)$1	286	85	88	9.0000
UGG	chr16:88717258-88717512(-)$1	254	0	3	9.0000
UGG	chr1:155300133-155300396(+)$1	263	9	12	9.0000
UGG	chr19:798378-798686(+)$1	308	13	16	9.0000
UGG	chr12:121124959-121125217(+)$1	258	54	57	9.0000
UGG	chr20:5986972-5987288(+)$1	316	13	16	9.0000
UGG	chr7:74489402-74489659(-)$1	257	0	3	9.0000
UGG	chr3:99567154-99567412(+)$1	258	13	16	9.0000
UGG	chr4:6642859-6643086(+)$1	227	58	61	9.0000
UGG	chr17:1552769-1553060(-)$1	291	65	68	9.0000
UGG	chr4:520777-521058(+)$1	281	27	30	9.0000
UGG	chr8:48711715-48711984(-)$1	269	7	10	9.0000
UGG	chr7:923743-923955(+)$1	212	69	72	9.0000
UGG	chr9:131418761-131419066(-)$1	305	62	65	9.0000
UGG	chr9:131418707-131418961(-)$1	254	3	6	9.0000
UGG	chr11:61644789-61645083(-)$1	294	45	48	9.0000
UGG	chr17:29632114-29632405(+)$1	291	3	6	9.0000
UGG	chr7:104752850-104753137(-)$1	287	26	29	9.0000
UGG	chr7:156432572-156432889(-)$1	317	7	10	9.0000
UGG	chr9:101867464-101867740(+)$1	276	10	13	9.0000
UGG	chr19:8551122-8551339(+)$1	217	9	12	9.0000
UGG	chr7:6075004-6075252(-)$1	248	102	105	9.0000
UGG	chr7:104752502-104752754(-)$1	252	26	29	9.0000
UGG	chr3:99567710-99567959(+)$1	249	39	42	9.0000
UGG	chr18:34409172-34409401(+)$1	229	55	58	9.0000
ugg	chr11:940688-940965(+)$1	277	10	13	9.0000
UGG	chr18:34409237-34409494(+)$1	257	35	38	9.0000
UGG	chr1:1689771-1690111(-)$1	340	116	119	9.0000
UGG	chr14:103593470-103593864(+)$1	394	9	12	9.0000
UGG	chr2:201728827-201729098(-)$1	271	55	58	9.0000
UGG	chr2:97482430-97482743(+)$1	313	17	20	9.0000
UGG	chr19:1012203-1012500(-)$1	297	24	27	9.0000
UGG	chr19:34919232-34919495(+)$1	263	92	95	9.0000
UGG	chr5:137089641-137089900(-)$1	259	33	36	9.0000
UGG	chr19:8551017-8551241(+)$1	224	6	9	9.0000
Ugg	chr9:140446425-140446710(+)$1	285	20	23	9.0000
UGG	chr19:8550805-8551049(+)$1	244	17	20	9.0000
UGG	chr2:10583304-10583535(-)$1	231	6	9	9.0000
UGG	chr16:777314-777622(+)$1	308	9	12	9.0000
UGG	chr20:42295702-42296047(+)$1	345	11	14	9.0000
ugg	chr21:46281535-46281798(-)$1	263	52	55	9.0000
UGG	chr19:8550423-8550681(+)$1	258	64	67	9.0000
UGG	chr19:55897973-55898227(+)$1	254	28	31	9.0000
UGG	chr17:29622334-29622610(+)$1	276	10	13	9.0000
UGG	chr16:2301257-2301524(-)$1	267	24	27	9.0000
UGG	chr19:8550939-8551217(+)$1	278	3	6	9.0000
UGG	chr17:29632205-29632464(+)$1	259	5	8	9.0000
UGG	chr5:86564312-86564635(+)$1	323	9	12	9.0000
UGG	chr15:76196174-76196451(+)$1	277	26	29	9.0000
UGG	chr7:129710288-129710649(+)$1	361	31	34	9.0000
UGG	chr2:10583515-10583729(-)$1	214	109	112	9.0000
UGG	chr7:65446929-65447298(-)$1	369	11	14	9.0000
UGG	chr7:6075349-6075583(-)$1	234	2	5	9.0000
UGG	chr19:8551041-8551271(+)$1	230	6	9	9.0000
UGG	chr19:8550507-8550791(+)$1	284	1	4	9.0000
UGG	chr19:55628718-55629009(-)$1	291	41	44	9.0000
UGG	chr17:7137444-7137760(-)$1	316	68	71	9.0000
UGG	chr1:245025909-245026178(-)$1	269	73	76	9.0000
UGG	chr8:145149985-145150240(+)$1	255	18	21	9.0000
UGG	chr3:99567351-99567606(+)$1	255	60	63	9.0000
UGG	chr1:87379610-87379897(-)$1	287	35	38	9.0000
UGG	chr7:923755-924006(+)$1	251	57	60	9.0000
UGG	chr17:29622717-29623003(+)$1	286	6	9	9.0000
UGG	chr11:236034-236360(-)$1	326	17	20	9.0000
UGG	chr7:6075705-6075949(-)$1	244	118	121	9.0000
UGG	chr17:29622238-29622497(+)$1	259	38	41	9.0000
UGG	chr1:248020655-248020940(+)$1	285	116	119	9.0000
UGG	chr21:45432186-45432494(+)$1	308	20	23	9.0000
UGG	chr8:145149889-145150126(+)$1	237	64	67	9.0000
UGG	chr6:109764643-109764923(+)$1	280	3	6	9.0000
UGG	chr9:37784684-37785100(-)$1	416	1	4	9.0000
UGG	chr19:8550707-8551005(+)$1	298	19	22	9.0000
UGG	chr16:74330666-74330962(+)$1	296	5	8	9.0000
ugg	chr11:59382807-59383100(-)$1	293	22	25	9.0000
UGG	chr17:80789598-80789920(+)$1	322	12	15	9.0000
ugg	chr19:40331266-40331525(-)$1	259	33	36	9.0000
ugg	chr19:18418202-18418465(-)$1	263	16	19	9.0000
UGG	chr7:72721546-72721834(-)$1	288	102	105	9.0000
UGG	chr7:104752719-104752984(-)$1	265	1	4	9.0000
UGG	chr6:32940773-32941013(+)$1	240	3	6	9.0000
UGG	chr10:21845746-21846000(+)$1	254	67	70	9.0000
UGG	chrX:152936704-152937006(-)$1	302	0	3	9.0000
ugg	chr18:8609607-8609929(+)$1	322	119	122	9.0000
UGG	chr17:74261444-74261704(+)$1	260	155	158	9.0000
UGG	chr11:3012329-3012569(-)$1	240	50	53	9.0000
UGG	chr3:196304350-196304621(+)$1	271	38	41	9.0000
UGG	chr15:28519431-28519668(-)$1	237	12	15	9.0000
UGG	chr11:108093067-108093362(-)$1	295	8	11	9.0000
UGG	chr7:117824231-117824541(+)$1	310	59	62	9.0000
Ugg	chr12:121125167-121125423(+)$1	256	29	32	9.0000

#otherMatches

#Struct PSSM
EEE	chr11:940787-941074(+)$1	287	13	16	9.0000
hhh	chr3:196295789-196296102(+)$1	313	56	59	9.0000
KCC	chr2:74691996-74692401(-)$1	405	28	31	9.0000
::F	chr2:10583335-10583540(-)$1	205	4	7	9.0000
GGG	chr4:48343876-48344125(+)$1	249	11	14	9.0000
ddd	chr6:32940765-32940973(+)$1	208	11	14	9.0000
iii	chr17:1552925-1553197(-)$1	272	20	23	9.0000
CC{	chr1:1689651-1689926(-)$1	275	6	9	9.0000
::D	chr19:8550849-8551139(+)$1	290	1	4	9.0000
:ee	chr17:80788533-80788836(+)$1	303	6	9	9.0000
[dd	chr7:6075407-6075693(-)$1	286	85	88	9.0000
DDD	chr16:88717258-88717512(-)$1	254	0	3	9.0000
BB{	chr1:155300133-155300396(+)$1	263	9	12	9.0000
bbc	chr19:798378-798686(+)$1	308	13	16	9.0000
EEE	chr12:121124959-121125217(+)$1	258	54	57	9.0000
JJJ	chr20:5986972-5987288(+)$1	316	13	16	9.0000
:EE	chr7:74489402-74489659(-)$1	257	0	3	9.0000
[cc	chr3:99567154-99567412(+)$1	258	13	16	9.0000
eee	chr4:6642859-6643086(+)$1	227	58	61	9.0000
DDK	chr17:1552769-1553060(-)$1	291	65	68	9.0000
DBB	chr4:520777-521058(+)$1	281	27	30	9.0000
""c	chr8:48711715-48711984(-)$1	269	7	10	9.0000
eee	chr7:923743-923955(+)$1	212	69	72	9.0000
::g	chr9:131418761-131419066(-)$1	305	62	65	9.0000
D:J	chr9:131418707-131418961(-)$1	254	3	6	9.0000
""c	chr11:61644789-61645083(-)$1	294	45	48	9.0000
FFF	chr17:29632114-29632405(+)$1	291	3	6	9.0000
H::	chr7:104752850-104753137(-)$1	287	26	29	9.0000
:GG	chr7:156432572-156432889(-)$1	317	7	10	9.0000
[ff	chr9:101867464-101867740(+)$1	276	10	13	9.0000
d!!	chr19:8551122-8551339(+)$1	217	9	12	9.0000
eee	chr7:6075004-6075252(-)$1	248	102	105	9.0000
DKK	chr7:104752502-104752754(-)$1	252	26	29	9.0000
ggg	chr3:99567710-99567959(+)$1	249	39	42	9.0000
eee	chr18:34409172-34409401(+)$1	229	55	58	9.0000
:::	chr11:940688-940965(+)$1	277	10	13	9.0000
[ee	chr18:34409237-34409494(+)$1	257	35	38	9.0000
ddm	chr1:1689771-1690111(-)$1	340	116	119	9.0000
DD:	chr14:103593470-103593864(+)$1	394	9	12	9.0000
ee[	chr2:201728827-201729098(-)$1	271	55	58	9.0000
[ff	chr2:97482430-97482743(+)$1	313	17	20	9.0000
KCC	chr19:1012203-1012500(-)$1	297	24	27	9.0000
ggg	chr19:34919232-34919495(+)$1	263	92	95	9.0000
[cc	chr5:137089641-137089900(-)$1	259	33	36	9.0000
mmm	chr19:8551017-8551241(+)$1	224	6	9	9.0000
KKF	chr9:140446425-140446710(+)$1	285	20	23	9.0000
ggg	chr19:8550805-8551049(+)$1	244	17	20	9.0000
F{F	chr2:10583304-10583535(-)$1	231	6	9	9.0000
fff	chr16:777314-777622(+)$1	308	9	12	9.0000
FFF	chr20:42295702-42296047(+)$1	345	11	14	9.0000
ggg	chr21:46281535-46281798(-)$1	263	52	55	9.0000
ggg	chr19:8550423-8550681(+)$1	258	64	67	9.0000
d[c	chr19:55897973-55898227(+)$1	254	28	31	9.0000
JJJ	chr17:29622334-29622610(+)$1	276	10	13	9.0000
a[a	chr16:2301257-2301524(-)$1	267	24	27	9.0000
::C	chr19:8550939-8551217(+)$1	278	3	6	9.0000
EEc	chr17:29632205-29632464(+)$1	259	5	8	9.0000
CCC	chr5:86564312-86564635(+)$1	323	9	12	9.0000
ggg	chr15:76196174-76196451(+)$1	277	26	29	9.0000
$$h	chr7:129710288-129710649(+)$1	361	31	34	9.0000
ggg	chr2:10583515-10583729(-)$1	214	109	112	9.0000
:bb	chr7:65446929-65447298(-)$1	369	11	14	9.0000
:CC	chr7:6075349-6075583(-)$1	234	2	5	9.0000
{EE	chr19:8551041-8551271(+)$1	230	6	9	9.0000
:ff	chr19:8550507-8550791(+)$1	284	1	4	9.0000
DD{	chr19:55628718-55629009(-)$1	291	41	44	9.0000
KKD	chr17:7137444-7137760(-)$1	316	68	71	9.0000
g44	chr1:245025909-245026178(-)$1	269	73	76	9.0000
ddd	chr8:145149985-145150240(+)$1	255	18	21	9.0000
emm	chr3:99567351-99567606(+)$1	255	60	63	9.0000
g##	chr1:87379610-87379897(-)$1	287	35	38	9.0000
cnn	chr7:923755-924006(+)$1	251	57	60	9.0000
::G	chr17:29622717-29623003(+)$1	286	6	9	9.0000
GGG	chr11:236034-236360(-)$1	326	17	20	9.0000
ii[	chr7:6075705-6075949(-)$1	244	118	121	9.0000
lll	chr17:29622238-29622497(+)$1	259	38	41	9.0000
ff[	chr1:248020655-248020940(+)$1	285	116	119	9.0000
{DD	chr21:45432186-45432494(+)$1	308	20	23	9.0000
ggg	chr8:145149889-145150126(+)$1	237	64	67	9.0000
JJJ	chr6:109764643-109764923(+)$1	280	3	6	9.0000
:::	chr9:37784684-37785100(-)$1	416	1	4	9.0000
bb[	chr19:8550707-8551005(+)$1	298	19	22	9.0000
d$$	chr16:74330666-74330962(+)$1	296	5	8	9.0000
c[e	chr11:59382807-59383100(-)$1	293	22	25	9.0000
hho	chr17:80789598-80789920(+)$1	322	12	15	9.0000
mme	chr19:40331266-40331525(-)$1	259	33	36	9.0000
ood	chr19:18418202-18418465(-)$1	263	16	19	9.0000
ggg	chr7:72721546-72721834(-)$1	288	102	105	9.0000
:::	chr7:104752719-104752984(-)$1	265	1	4	9.0000
:BB	chr6:32940773-32941013(+)$1	240	3	6	9.0000
eee	chr10:21845746-21846000(+)$1	254	67	70	9.0000
:EE	chrX:152936704-152937006(-)$1	302	0	3	9.0000
???	chr18:8609607-8609929(+)$1	322	119	122	9.0000
fff	chr17:74261444-74261704(+)$1	260	155	158	9.0000
fff	chr11:3012329-3012569(-)$1	240	50	53	9.0000
nnn	chr3:196304350-196304621(+)$1	271	38	41	9.0000
JJJ	chr15:28519431-28519668(-)$1	237	12	15	9.0000
B{B	chr11:108093067-108093362(-)$1	295	8	11	9.0000
::b	chr7:117824231-117824541(+)$1	310	59	62	9.0000
:GG	chr12:121125167-121125423(+)$1	256	29	32	9.0000

#DB
(((	chr11:940787-941074(+)$1	1	13	16	9.0000
(((	chr3:196295789-196296102(+)$1	1	56	59	9.0000
.((	chr2:74691996-74692401(-)$1	1	28	31	9.0000
..(	chr2:10583335-10583540(-)$1	1	4	7	9.0000
(((	chr4:48343876-48344125(+)$1	1	11	14	9.0000
(((	chr6:32940765-32940973(+)$1	1	11	14	9.0000
(((	chr17:1552925-1553197(-)$1	1	20	23	9.0000
((.	chr1:1689651-1689926(-)$1	1	6	9	9.0000
..(	chr19:8550849-8551139(+)$1	1	1	4	9.0000
.((	chr17:80788533-80788836(+)$1	1	6	9	9.0000
.((	chr7:6075407-6075693(-)$1	1	85	88	9.0000
(((	chr16:88717258-88717512(-)$1	1	0	3	9.0000
((.	chr1:155300133-155300396(+)$1	1	9	12	9.0000
(((	chr19:798378-798686(+)$1	1	13	16	9.0000
(((	chr12:121124959-121125217(+)$1	1	54	57	9.0000
(((	chr20:5986972-5987288(+)$1	1	13	16	9.0000
.((	chr7:74489402-74489659(-)$1	1	0	3	9.0000
.((	chr3:99567154-99567412(+)$1	1	13	16	9.0000
(((	chr4:6642859-6643086(+)$1	1	58	61	9.0000
((.	chr17:1552769-1553060(-)$1	1	65	68	9.0000
(((	chr4:520777-521058(+)$1	1	27	30	9.0000
..(	chr8:48711715-48711984(-)$1	1	7	10	9.0000
)))	chr7:923743-923955(+)$1	1	69	72	9.0000
..(	chr9:131418761-131419066(-)$1	1	62	65	9.0000
(.(	chr9:131418707-131418961(-)$1	1	3	6	9.0000
..(	chr11:61644789-61645083(-)$1	1	45	48	9.0000
(((	chr17:29632114-29632405(+)$1	1	3	6	9.0000
(..	chr7:104752850-104753137(-)$1	1	26	29	9.0000
.((	chr7:156432572-156432889(-)$1	1	7	10	9.0000
.((	chr9:101867464-101867740(+)$1	1	10	13	9.0000
(..	chr19:8551122-8551339(+)$1	1	9	12	9.0000
(((	chr7:6075004-6075252(-)$1	1	102	105	9.0000
(..	chr7:104752502-104752754(-)$1	1	26	29	9.0000
)))	chr3:99567710-99567959(+)$1	1	39	42	9.0000
)))	chr18:34409172-34409401(+)$1	1	55	58	9.0000
...	chr11:940688-940965(+)$1	1	10	13	9.0000
.((	chr18:34409237-34409494(+)$1	1	35	38	9.0000
((.	chr1:1689771-1690111(-)$1	1	116	119	9.0000
((.	chr14:103593470-103593864(+)$1	1	9	12	9.0000
((.	chr2:201728827-201729098(-)$1	1	55	58	9.0000
.((	chr2:97482430-97482743(+)$1	1	17	20	9.0000
.((	chr19:1012203-1012500(-)$1	1	24	27	9.0000
(((	chr19:34919232-34919495(+)$1	1	92	95	9.0000
.((	chr5:137089641-137089900(-)$1	1	33	36	9.0000
...	chr19:8551017-8551241(+)$1	1	6	9	9.0000
..(	chr9:140446425-140446710(+)$1	1	20	23	9.0000
(((	chr19:8550805-8551049(+)$1	1	17	20	9.0000
(.(	chr2:10583304-10583535(-)$1	1	6	9	9.0000
(((	chr16:777314-777622(+)$1	1	9	12	9.0000
(((	chr20:42295702-42296047(+)$1	1	11	14	9.0000
)))	chr21:46281535-46281798(-)$1	1	52	55	9.0000
)))	chr19:8550423-8550681(+)$1	1	64	67	9.0000
(.(	chr19:55897973-55898227(+)$1	1	28	31	9.0000
(((	chr17:29622334-29622610(+)$1	1	10	13	9.0000
(.(	chr16:2301257-2301524(-)$1	1	24	27	9.0000
..(	chr19:8550939-8551217(+)$1	1	3	6	9.0000
(((	chr17:29632205-29632464(+)$1	1	5	8	9.0000
(((	chr5:86564312-86564635(+)$1	1	9	12	9.0000
(((	chr15:76196174-76196451(+)$1	1	26	29	9.0000
..(	chr7:129710288-129710649(+)$1	1	31	34	9.0000
)))	chr2:10583515-10583729(-)$1	1	109	112	9.0000
.((	chr7:65446929-65447298(-)$1	1	11	14	9.0000
.((	chr7:6075349-6075583(-)$1	1	2	5	9.0000
.((	chr19:8551041-8551271(+)$1	1	6	9	9.0000
.((	chr19:8550507-8550791(+)$1	1	1	4	9.0000
((.	chr19:55628718-55629009(-)$1	1	41	44	9.0000
..(	chr17:7137444-7137760(-)$1	1	68	71	9.0000
)..	chr1:245025909-245026178(-)$1	1	73	76	9.0000
)))	chr8:145149985-145150240(+)$1	1	18	21	9.0000
(..	chr3:99567351-99567606(+)$1	1	60	63	9.0000
(..	chr1:87379610-87379897(-)$1	1	35	38	9.0000
(..	chr7:923755-924006(+)$1	1	57	60	9.0000
..(	chr17:29622717-29623003(+)$1	1	6	9	9.0000
(((	chr11:236034-236360(-)$1	1	17	20	9.0000
((.	chr7:6075705-6075949(-)$1	1	118	121	9.0000
...	chr17:29622238-29622497(+)$1	1	38	41	9.0000
((.	chr1:248020655-248020940(+)$1	1	116	119	9.0000
.((	chr21:45432186-45432494(+)$1	1	20	23	9.0000
)))	chr8:145149889-145150126(+)$1	1	64	67	9.0000
(((	chr6:109764643-109764923(+)$1	1	3	6	9.0000
...	chr9:37784684-37785100(-)$1	1	1	4	9.0000
((.	chr19:8550707-8551005(+)$1	1	19	22	9.0000
(..	chr16:74330666-74330962(+)$1	1	5	8	9.0000
(.(	chr11:59382807-59383100(-)$1	1	22	25	9.0000
((.	chr17:80789598-80789920(+)$1	1	12	15	9.0000
..)	chr19:40331266-40331525(-)$1	1	33	36	9.0000
..)	chr19:18418202-18418465(-)$1	1	16	19	9.0000
)))	chr7:72721546-72721834(-)$1	1	102	105	9.0000
...	chr7:104752719-104752984(-)$1	1	1	4	9.0000
.((	chr6:32940773-32941013(+)$1	1	3	6	9.0000
(((	chr10:21845746-21846000(+)$1	1	67	70	9.0000
.((	chrX:152936704-152937006(-)$1	1	0	3	9.0000
...	chr18:8609607-8609929(+)$1	1	119	122	9.0000
)))	chr17:74261444-74261704(+)$1	1	155	158	9.0000
(((	chr11:3012329-3012569(-)$1	1	50	53	9.0000
...	chr3:196304350-196304621(+)$1	1	38	41	9.0000
(((	chr15:28519431-28519668(-)$1	1	12	15	9.0000
(.(	chr11:108093067-108093362(-)$1	1	8	11	9.0000
..(	chr7:117824231-117824541(+)$1	1	59	62	9.0000
.((	chr12:121125167-121125423(+)$1	1	29	32	9.0000

#PSSM
U : 0.93	u : 0.07	
G : 0.91	g : 0.09	
G : 0.91	g : 0.09	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_CDS_m1_run1.nuc.txt

#NT
gga	chr17:74401478-74401750(-)$1	272	4	7	9.0000
GGA	chr7:94881023-94881274(+)$1	251	74	77	9.0000
GGA	chr16:69171669-69171957(+)$1	288	49	52	9.0000
gga	chr12:120109958-120110257(+)$1	299	5	8	9.0000
GGA	chr9:116967281-116967487(+)$1	206	25	28	9.0000
GGA	chr12:7285450-7285726(+)$1	276	59	62	9.0000
GGA	chr1:229438465-229438736(+)$1	271	36	39	9.0000
GGA	chr12:49448667-49448923(-)$1	256	32	35	9.0000
GGA	chr5:175812202-175812526(-)$1	324	3	6	9.0000
GGA	chr22:21345765-21346017(+)$1	252	27	30	9.0000
GGA	chr1:22211232-22211454(-)$1	222	97	100	9.0000
GGA	chr11:62489189-62489431(-)$1	242	32	35	9.0000
GGA	chr17:49091574-49091814(-)$1	240	191	194	9.0000
GGA	chr17:80583197-80583490(-)$1	293	7	10	9.0000
GGA	chr16:56970489-56970761(+)$1	272	12	15	9.0000
GGA	chr17:55184426-55184711(+)$1	285	48	51	9.0000
GGA	chr2:29169444-29169697(+)$1	253	20	23	9.0000
GGA	chr9:117062804-117063022(+)$1	218	34	37	9.0000
GGA	chr19:45417984-45418250(+)$1	266	24	27	9.0000
GGA	chr3:52831790-52832047(+)$1	257	69	72	9.0000
GGA	chr17:36971174-36971445(-)$1	271	94	97	9.0000
GGA	chr12:121890902-121891215(-)$1	313	93	96	9.0000
GGA	chr16:18800313-18800596(-)$1	283	10	13	9.0000
GGA	chr1:154940086-154940325(-)$1	239	65	68	9.0000
GGA	chr16:29815995-29816312(+)$1	317	4	7	9.0000
GGA	chr1:146639208-146639488(-)$1	280	11	14	9.0000
GGA	chr16:70572986-70573240(+)$1	254	116	119	9.0000
GGA	chr21:46912983-46913198(+)$1	215	21	24	9.0000
GGA	chr20:40161585-40161832(-)$1	247	9	12	9.0000
GGA	chr16:715580-715816(+)$1	236	2	5	9.0000
GGA	chr16:27480707-27480968(-)$1	261	28	31	9.0000
GGA	chr9:117032947-117033161(+)$1	214	60	63	9.0000
GGA	chr2:239344225-239344513(+)$1	288	10	13	9.0000
GGA	chr20:3202359-3202616(+)$1	257	88	91	9.0000
GGA	chr17:36887541-36887824(+)$1	283	93	96	9.0000
gga	chr22:46674389-46674681(+)$1	292	6	9	9.0000
GGA	chr19:2427214-2427472(-)$1	258	9	12	9.0000
GGA	chr12:57579213-57579442(+)$1	229	32	35	9.0000
GGA	chr9:116999843-117000059(+)$1	216	29	32	9.0000
GGA	chr3:191047353-191047671(+)$1	318	4	7	9.0000
GGA	chr22:51158509-51158759(+)$1	250	7	10	9.0000
GGA	chr6:144803307-144803525(+)$1	218	30	33	9.0000
GGA	chr19:15509956-15510217(-)$1	261	12	15	9.0000
GGA	chr12:104332128-104332337(+)$1	209	3	6	9.0000
gga	chr5:139903640-139903929(+)$1	289	87	90	9.0000
GGA	chr1:17934310-17934570(+)$1	260	11	14	9.0000
GGA	chr9:96054687-96054938(+)$1	251	84	87	9.0000
GGA	chrX:70469741-70469998(-)$1	257	74	77	9.0000
GGA	chr16:75269441-75269721(-)$1	280	1	4	9.0000
GGA	chr7:11022489-11022869(+)$1	380	5	8	9.0000
GGA	chr15:91503436-91503714(+)$1	278	12	15	9.0000
GGA	chr8:145223160-145223426(+)$1	266	56	59	9.0000
GGA	chr2:61180034-61180337(-)$1	303	57	60	9.0000
GGA	chr19:46879713-46879964(+)$1	251	3	6	9.0000
GGA	chr6:114180896-114181173(+)$1	277	24	27	9.0000
GGA	chr11:17390389-17390656(+)$1	267	83	86	9.0000
GGA	chr12:113612622-113612904(-)$1	282	47	50	9.0000
GGA	chr2:128047278-128047549(-)$1	271	42	45	9.0000
GGA	chr2:74708465-74708697(-)$1	232	45	48	9.0000
GGA	chr8:126443403-126443696(+)$1	293	80	83	9.0000
GGA	chr22:37888689-37888922(-)$1	233	9	12	9.0000
GGA	chr14:103986822-103987071(-)$1	249	11	14	9.0000
GGA	chr12:56385091-56385390(+)$1	299	51	54	9.0000
GGA	chr17:73774698-73774965(-)$1	267	11	14	9.0000
GGA	chr16:70594241-70594513(+)$1	272	62	65	9.0000
GGA	chr11:118923386-118923637(-)$1	251	4	7	9.0000
GGA	chr11:372743-372965(+)$1	222	4	7	9.0000
GGA	chr14:21679375-21679626(-)$1	251	10	13	9.0000
gga	chr12:56563217-56563501(-)$1	284	35	38	9.0000
GGA	chr1:39916694-39916949(+)$1	255	41	44	9.0000
GGA	chr19:2039720-2039988(-)$1	268	11	14	9.0000
GGA	chr19:2807705-2807971(+)$1	266	23	26	9.0000
GGA	chr20:61461030-61461269(+)$1	239	87	90	9.0000
GGA	chr3:32927287-32927572(+)$1	285	9	12	9.0000
gga	chr20:47632694-47632940(+)$1	246	52	55	9.0000
GGA	chr15:28465628-28465893(-)$1	265	37	40	9.0000
GGA	chr17:76121125-76121377(-)$1	252	1	4	9.0000
GGA	chr17:73873774-73874055(-)$1	281	10	13	9.0000
GGA	chr21:45726502-45726738(+)$1	236	31	34	9.0000
GGA	chr11:121421221-121421483(+)$1	262	11	14	9.0000
GGA	chr20:61449769-61449974(+)$1	205	13	16	9.0000
GGA	chr14:21546931-21547169(+)$1	238	48	51	9.0000
GGA	chr10:21884157-21884387(+)$1	230	24	27	9.0000
GGA	chr12:69991954-69992262(+)$1	308	2	5	9.0000
GGA	chr2:11752510-11752748(+)$1	238	11	14	9.0000
GGA	chr8:134260874-134261168(-)$1	294	35	38	9.0000
GGA	chr16:70578223-70578476(+)$1	253	22	25	9.0000
GGA	chr1:160195249-160195549(-)$1	300	95	98	9.0000
GGA	chr16:88788680-88788891(-)$1	211	55	58	9.0000
GGA	chr20:31608247-31608478(+)$1	231	41	44	9.0000
GGA	chr12:121438740-121439022(+)$1	282	23	26	9.0000
gga	chr9:116968431-116968633(+)$1	202	28	31	9.0000
GGA	chr20:36014332-36014613(+)$1	281	48	51	9.0000
GGA	chr22:50354952-50355233(+)$1	281	36	39	9.0000
GGA	chr2:3391380-3391658(+)$1	278	16	19	9.0000
gga	chr17:48823154-48823387(+)$1	233	15	18	9.0000
GGA	chr5:14336662-14336909(+)$1	247	11	14	9.0000
GGA	chrX:77365208-77365518(+)$1	310	113	116	9.0000
GGA	chr2:74702123-74702374(-)$1	251	10	13	9.0000

#otherMatches

#Struct PSSM
:BB	chr1:155880425-155880713(-)$1	288	0	3	9.0000
:::	chr17:74401478-74401750(-)$1	272	4	7	9.0000
44d	chr7:94881023-94881274(+)$1	251	74	77	9.0000
]gg	chr16:69171669-69171957(+)$1	288	49	52	9.0000
ggg	chr12:120109958-120110257(+)$1	299	5	8	9.0000
KGG	chr9:116967281-116967487(+)$1	206	25	28	9.0000
==:	chr12:7285450-7285726(+)$1	276	59	62	9.0000
ddd	chr1:229438465-229438736(+)$1	271	36	39	9.0000
b[b	chr12:49448667-49448923(-)$1	256	32	35	9.0000
:II	chr5:175812202-175812526(-)$1	324	3	6	9.0000
h[a	chr22:21345765-21346017(+)$1	252	27	30	9.0000
ccc	chr1:22211232-22211454(-)$1	222	97	100	9.0000
ddm	chr11:62489189-62489431(-)$1	242	32	35	9.0000
fff	chr17:49091574-49091814(-)$1	240	191	194	9.0000
ddd	chr17:80583197-80583490(-)$1	293	7	10	9.0000
ttt	chr16:56970489-56970761(+)$1	272	12	15	9.0000
EEE	chr17:55184426-55184711(+)$1	285	48	51	9.0000
rrr	chr2:29169444-29169697(+)$1	253	20	23	9.0000
ii[	chr9:117062804-117063022(+)$1	218	34	37	9.0000
dd[	chr19:45417984-45418250(+)$1	266	24	27	9.0000
fff	chr3:52831790-52832047(+)$1	257	69	72	9.0000
cc]	chr17:36971174-36971445(-)$1	271	94	97	9.0000
eee	chr12:121890902-121891215(-)$1	313	93	96	9.0000
JMM	chr16:18800313-18800596(-)$1	283	10	13	9.0000
ggg	chr1:154940086-154940325(-)$1	239	65	68	9.0000
DHH	chr16:29815995-29816312(+)$1	317	4	7	9.0000
FFF	chr1:146639208-146639488(-)$1	280	11	14	9.0000
ccc	chr16:70572986-70573240(+)$1	254	116	119	9.0000
:::	chr21:46912983-46913198(+)$1	215	21	24	9.0000
DDD	chr20:40161585-40161832(-)$1	247	9	12	9.0000
:::	chr16:715580-715816(+)$1	236	2	5	9.0000
rrr	chr16:27480707-27480968(-)$1	261	28	31	9.0000
cc]	chr9:117032947-117033161(+)$1	214	60	63	9.0000
eee	chr2:239344225-239344513(+)$1	288	10	13	9.0000
ee[	chr20:3202359-3202616(+)$1	257	88	91	9.0000
BB}	chr17:36887541-36887824(+)$1	283	93	96	9.0000
DDD	chr22:46674389-46674681(+)$1	292	6	9	9.0000
odd	chr19:2427214-2427472(-)$1	258	9	12	9.0000
rrr	chr12:57579213-57579442(+)$1	229	32	35	9.0000
fff	chr9:116999843-117000059(+)$1	216	29	32	9.0000
cc$	chr3:191047353-191047671(+)$1	318	4	7	9.0000
FF{	chr22:51158509-51158759(+)$1	250	7	10	9.0000
css	chr6:144803307-144803525(+)$1	218	30	33	9.0000
cc:	chr19:15509956-15510217(-)$1	261	12	15	9.0000
EE:	chr12:104332128-104332337(+)$1	209	3	6	9.0000
:::	chr5:139903640-139903929(+)$1	289	87	90	9.0000
ee!	chr1:17934310-17934570(+)$1	260	11	14	9.0000
'''	chr9:96054687-96054938(+)$1	251	84	87	9.0000
ggg	chrX:70469741-70469998(-)$1	257	74	77	9.0000
::d	chr16:75269441-75269721(-)$1	280	1	4	9.0000
eem	chr7:11022489-11022869(+)$1	380	5	8	9.0000
h[b	chr15:91503436-91503714(+)$1	278	12	15	9.0000
LDD	chr8:145223160-145223426(+)$1	266	56	59	9.0000
HKK	chr2:61180034-61180337(-)$1	303	57	60	9.0000
:::	chr19:46879713-46879964(+)$1	251	3	6	9.0000
bb[	chr6:114180896-114181173(+)$1	277	24	27	9.0000
ddd	chr11:17390389-17390656(+)$1	267	83	86	9.0000
ggg	chr12:113612622-113612904(-)$1	282	47	50	9.0000
fff	chr2:128047278-128047549(-)$1	271	42	45	9.0000
dd]	chr2:74708465-74708697(-)$1	232	45	48	9.0000
C::	chr8:126443403-126443696(+)$1	293	80	83	9.0000
FFN	chr22:37888689-37888922(-)$1	233	9	12	9.0000
II:	chr14:103986822-103987071(-)$1	249	11	14	9.0000
fff	chr12:56385091-56385390(+)$1	299	51	54	9.0000
#ff	chr17:73774698-73774965(-)$1	267	11	14	9.0000
JJJ	chr16:70594241-70594513(+)$1	272	62	65	9.0000
BBM	chr11:118923386-118923637(-)$1	251	4	7	9.0000
III	chr11:372743-372965(+)$1	222	4	7	9.0000
EEE	chr14:21679375-21679626(-)$1	251	10	13	9.0000
ddd	chr12:56563217-56563501(-)$1	284	35	38	9.0000
dff	chr1:39916694-39916949(+)$1	255	41	44	9.0000
mdd	chr19:2039720-2039988(-)$1	268	11	14	9.0000
mmm	chr19:2807705-2807971(+)$1	266	23	26	9.0000
%%%	chr20:61461030-61461269(+)$1	239	87	90	9.0000
B{C	chr3:32927287-32927572(+)$1	285	9	12	9.0000
bb]	chr20:47632694-47632940(+)$1	246	52	55	9.0000
fff	chr15:28465628-28465893(-)$1	265	37	40	9.0000
ddd	chr17:76121125-76121377(-)$1	252	1	4	9.0000
EEE	chr17:73873774-73874055(-)$1	281	10	13	9.0000
ma]	chr21:45726502-45726738(+)$1	236	31	34	9.0000
CC{	chr11:121421221-121421483(+)$1	262	11	14	9.0000
JJJ	chr20:61449769-61449974(+)$1	205	13	16	9.0000
ggg	chr14:21546931-21547169(+)$1	238	48	51	9.0000
::c	chr10:21884157-21884387(+)$1	230	24	27	9.0000
ddd	chr12:69991954-69992262(+)$1	308	2	5	9.0000
hhh	chr2:11752510-11752748(+)$1	238	11	14	9.0000
eee	chr8:134260874-134261168(-)$1	294	35	38	9.0000
GGG	chr16:70578223-70578476(+)$1	253	22	25	9.0000
vvv	chr1:160195249-160195549(-)$1	300	95	98	9.0000
ppp	chr16:88788680-88788891(-)$1	211	55	58	9.0000
FF{	chr20:31608247-31608478(+)$1	231	41	44	9.0000
fff	chr12:121438740-121439022(+)$1	282	23	26	9.0000
DDD	chr9:116968431-116968633(+)$1	202	28	31	9.0000
AKK	chr20:36014332-36014613(+)$1	281	48	51	9.0000
::H	chr22:50354952-50355233(+)$1	281	36	39	9.0000
ooo	chr2:3391380-3391658(+)$1	278	16	19	9.0000
:::	chr17:48823154-48823387(+)$1	233	15	18	9.0000
::E	chr5:14336662-14336909(+)$1	247	11	14	9.0000
fff	chrX:77365208-77365518(+)$1	310	113	116	9.0000
cbb	chr2:74702123-74702374(-)$1	251	10	13	9.0000

#DB
.((	chr1:155880425-155880713(-)$1	1	0	3	9.0000
...	chr17:74401478-74401750(-)$1	1	4	7	9.0000
..)	chr7:94881023-94881274(+)$1	1	74	77	9.0000
.))	chr16:69171669-69171957(+)$1	1	49	52	9.0000
(((	chr12:120109958-120110257(+)$1	1	5	8	9.0000
.((	chr9:116967281-116967487(+)$1	1	25	28	9.0000
)).	chr12:7285450-7285726(+)$1	1	59	62	9.0000
)))	chr1:229438465-229438736(+)$1	1	36	39	9.0000
(.(	chr12:49448667-49448923(-)$1	1	32	35	9.0000
.((	chr5:175812202-175812526(-)$1	1	3	6	9.0000
(.(	chr22:21345765-21346017(+)$1	1	27	30	9.0000
)))	chr1:22211232-22211454(-)$1	1	97	100	9.0000
((.	chr11:62489189-62489431(-)$1	1	32	35	9.0000
)))	chr17:49091574-49091814(-)$1	1	191	194	9.0000
(((	chr17:80583197-80583490(-)$1	1	7	10	9.0000
...	chr16:56970489-56970761(+)$1	1	12	15	9.0000
(((	chr17:55184426-55184711(+)$1	1	48	51	9.0000
...	chr2:29169444-29169697(+)$1	1	20	23	9.0000
((.	chr9:117062804-117063022(+)$1	1	34	37	9.0000
((.	chr19:45417984-45418250(+)$1	1	24	27	9.0000
)))	chr3:52831790-52832047(+)$1	1	69	72	9.0000
)).	chr17:36971174-36971445(-)$1	1	94	97	9.0000
)))	chr12:121890902-121891215(-)$1	1	93	96	9.0000
(..	chr16:18800313-18800596(-)$1	1	10	13	9.0000
(((	chr1:154940086-154940325(-)$1	1	65	68	9.0000
(((	chr16:29815995-29816312(+)$1	1	4	7	9.0000
(((	chr1:146639208-146639488(-)$1	1	11	14	9.0000
)))	chr16:70572986-70573240(+)$1	1	116	119	9.0000
...	chr21:46912983-46913198(+)$1	1	21	24	9.0000
(((	chr20:40161585-40161832(-)$1	1	9	12	9.0000
...	chr16:715580-715816(+)$1	1	2	5	9.0000
...	chr16:27480707-27480968(-)$1	1	28	31	9.0000
)).	chr9:117032947-117033161(+)$1	1	60	63	9.0000
(((	chr2:239344225-239344513(+)$1	1	10	13	9.0000
((.	chr20:3202359-3202616(+)$1	1	88	91	9.0000
)).	chr17:36887541-36887824(+)$1	1	93	96	9.0000
(((	chr22:46674389-46674681(+)$1	1	6	9	9.0000
.))	chr19:2427214-2427472(-)$1	1	9	12	9.0000
...	chr12:57579213-57579442(+)$1	1	32	35	9.0000
(((	chr9:116999843-117000059(+)$1	1	29	32	9.0000
((.	chr3:191047353-191047671(+)$1	1	4	7	9.0000
((.	chr22:51158509-51158759(+)$1	1	7	10	9.0000
(..	chr6:144803307-144803525(+)$1	1	30	33	9.0000
)).	chr19:15509956-15510217(-)$1	1	12	15	9.0000
((.	chr12:104332128-104332337(+)$1	1	3	6	9.0000
...	chr5:139903640-139903929(+)$1	1	87	90	9.0000
((.	chr1:17934310-17934570(+)$1	1	11	14	9.0000
...	chr9:96054687-96054938(+)$1	1	84	87	9.0000
)))	chrX:70469741-70469998(-)$1	1	74	77	9.0000
..(	chr16:75269441-75269721(-)$1	1	1	4	9.0000
((.	chr7:11022489-11022869(+)$1	1	5	8	9.0000
(.(	chr15:91503436-91503714(+)$1	1	12	15	9.0000
.((	chr8:145223160-145223426(+)$1	1	56	59	9.0000
(..	chr2:61180034-61180337(-)$1	1	57	60	9.0000
...	chr19:46879713-46879964(+)$1	1	3	6	9.0000
((.	chr6:114180896-114181173(+)$1	1	24	27	9.0000
)))	chr11:17390389-17390656(+)$1	1	83	86	9.0000
)))	chr12:113612622-113612904(-)$1	1	47	50	9.0000
(((	chr2:128047278-128047549(-)$1	1	42	45	9.0000
)).	chr2:74708465-74708697(-)$1	1	45	48	9.0000
(..	chr8:126443403-126443696(+)$1	1	80	83	9.0000
((.	chr22:37888689-37888922(-)$1	1	9	12	9.0000
((.	chr14:103986822-103987071(-)$1	1	11	14	9.0000
(((	chr12:56385091-56385390(+)$1	1	51	54	9.0000
.((	chr17:73774698-73774965(-)$1	1	11	14	9.0000
(((	chr16:70594241-70594513(+)$1	1	62	65	9.0000
((.	chr11:118923386-118923637(-)$1	1	4	7	9.0000
(((	chr11:372743-372965(+)$1	1	4	7	9.0000
(((	chr14:21679375-21679626(-)$1	1	10	13	9.0000
)))	chr12:56563217-56563501(-)$1	1	35	38	9.0000
)))	chr1:39916694-39916949(+)$1	1	41	44	9.0000
.))	chr19:2039720-2039988(-)$1	1	11	14	9.0000
...	chr19:2807705-2807971(+)$1	1	23	26	9.0000
...	chr20:61461030-61461269(+)$1	1	87	90	9.0000
(.(	chr3:32927287-32927572(+)$1	1	9	12	9.0000
)).	chr20:47632694-47632940(+)$1	1	52	55	9.0000
(((	chr15:28465628-28465893(-)$1	1	37	40	9.0000
(((	chr17:76121125-76121377(-)$1	1	1	4	9.0000
(((	chr17:73873774-73874055(-)$1	1	10	13	9.0000
.).	chr21:45726502-45726738(+)$1	1	31	34	9.0000
((.	chr11:121421221-121421483(+)$1	1	11	14	9.0000
(((	chr20:61449769-61449974(+)$1	1	13	16	9.0000
(((	chr14:21546931-21547169(+)$1	1	48	51	9.0000
..(	chr10:21884157-21884387(+)$1	1	24	27	9.0000
(((	chr12:69991954-69992262(+)$1	1	2	5	9.0000
(((	chr2:11752510-11752748(+)$1	1	11	14	9.0000
)))	chr8:134260874-134261168(-)$1	1	35	38	9.0000
(((	chr16:70578223-70578476(+)$1	1	22	25	9.0000
...	chr1:160195249-160195549(-)$1	1	95	98	9.0000
...	chr16:88788680-88788891(-)$1	1	55	58	9.0000
((.	chr20:31608247-31608478(+)$1	1	41	44	9.0000
)))	chr12:121438740-121439022(+)$1	1	23	26	9.0000
(((	chr9:116968431-116968633(+)$1	1	28	31	9.0000
(..	chr20:36014332-36014613(+)$1	1	48	51	9.0000
..(	chr22:50354952-50355233(+)$1	1	36	39	9.0000
...	chr2:3391380-3391658(+)$1	1	16	19	9.0000
...	chr17:48823154-48823387(+)$1	1	15	18	9.0000
..(	chr5:14336662-14336909(+)$1	1	11	14	9.0000
(((	chrX:77365208-77365518(+)$1	1	113	116	9.0000
(((	chr2:74702123-74702374(-)$1	1	10	13	9.0000

#PSSM
G : 0.92	g : 0.08	
G : 0.92	g : 0.08	
A : 0.92	a : 0.08	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_transcript_m2_run1.nuc.txt

#NT
AAGUCAAGAGAGGAAAUUCGAGCAGAAAUUCAGACAGAGAAAAAUAAGGUAGUCCAAGAAAUGAAGAUAAAAGAGAACAAGCCACUGCCACCAGUCCCUAUUCCCAACCUUGUAGGAAUACGUGGUGGAGACCCAGAAGAUAAUGACAUAAGAGAGAAAAGGGAAAAAAUUAAAGAGGUAAUAAGCUGAGUUUUGUGAUAUGGAGUGUUUAUGGAUUUGUAUUUGGAUACAAACAAAUAUAUAUAAUCUAUGGUAUCCUGUUUUGAUCUGUUUA	chr1:117944752-117945166(+)$1	414	134	408	377.0000

#otherMatches

#Struct PSSM
::::::CCCEEEEE{HHHHHHHH{BBFFFFFFMMMMCCC::::cccmmmmccc::::cccmmmmccc:::::::ddddllldddd:ddddmmmmddddDDDDKKEEEEE:::::eeeeehhhhhhhhppppppphhhhhhhh333eeeee:::::ccc"""ddddqqqqqqqqdddd333ccc::::::::EEEEEYYDDDD////////CCCZZZFFFFFF}BB}HHHHHHHHYYEEEEE}CCC:eeeee####eeeeemmmmeeeee333ee	chr12:112846123-112846421(-)$1	298	3	277	377.0000
G}EEEEE:::::ccc[cccnnnnnccc]cccGGGGGGGKKFFFFFF:bbmmmmbb:::::::::::CCCKKA{EEEEE{CCCLLLDDDDNNNNNEEEEE{CCCccc[bb[ddddmmmmdddd]bbccc:::::bbqqqqqqqqbb::::::::::CCC}EEEEE@@@@@@@@@@@@DDDD~~~~CCCYYEEEEE}AYYCCCccc####iiiiiiiiihhhhhhhhqqqqqqqqhhhhhhhh333iiiiiiiii22cccFFFFFFYYGGGGGGG:	chr1:117944752-117945166(+)$1	414	134	408	377.0000

#DB
......((((((((.((((((((.((((((((....(((....(((....)))....(((....))).......((((...)))).((((....))))((((..(((((.....(((((((((((((.......))))))))...))))).....(((...((((........))))...)))........)))))..))))........)))...)))))).)).))))))))..))))).))).(((((....(((((....)))))...))	chr12:112846123-112846421(-)$1	1	3	277	377.0000
).))))).....(((.(((.....))).)))(((((((..((((((.((....))...........(((..(.(((((.(((...((((.....(((((.((((((.((.((((....)))).))))).....((........))..........))).)))))............))))....)))..))))).)..)))(((....(((((((((((((((((........))))))))...)))))))))..)))))))))..))))))).	chr1:117944752-117945166(+)$1	1	134	408	377.0000

#PSSM
A : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	

#score	754.0
#seq	2
#width	274
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_CDS_m1_run1.nuc.txt

#NT
GCCC	chr3:49051134-49051365(+)$1	231	40	44	12.0000
GCCC	chr2:231902590-231902854(+)$1	264	41	45	12.0000
GCCC	chr22:20073375-20073639(+)$1	264	14	18	12.0000
GCCC	chr22:20073439-20073660(+)$1	221	63	67	12.0000
GCCC	chr3:49050193-49050494(+)$1	301	103	107	12.0000
GCCC	chr16:28877649-28877919(+)$1	270	6	10	12.0000
GCCC	chr1:19487406-19487667(-)$1	261	196	200	12.0000
GCCC	chr17:8108125-8108364(-)$1	239	28	32	12.0000
GCCC	chr10:70481251-70481487(+)$1	236	17	21	12.0000
GCCC	chr2:166771761-166772018(-)$1	257	165	169	12.0000
GCCC	chr22:20074000-20074330(+)$1	330	217	221	12.0000
GCCC	chr12:72056738-72057002(-)$1	264	187	191	12.0000
GCCC	chr1:36788404-36788682(+)$1	278	138	142	12.0000
GCCC	chrX:48814295-48814548(-)$1	253	29	33	12.0000
GCCC	chr5:179046223-179046484(-)$1	261	40	44	12.0000
GCCC	chr7:77166718-77166983(+)$1	265	229	233	12.0000
GCCC	chr7:150935257-150935515(+)$1	258	75	79	12.0000
GCCC	chr22:20073784-20074049(+)$1	265	159	163	12.0000
GCCC	chr13:113863808-113864055(+)$1	247	125	129	12.0000
GCCC	chr17:79972868-79973103(+)$1	235	24	28	12.0000
gccc	chr2:231902493-231902754(+)$1	261	11	15	12.0000
GCCC	chr17:80197785-80198011(+)$1	226	6	10	12.0000
GCCC	chrX:53581753-53581989(-)$1	236	72	76	12.0000
GCCC	chr22:20073541-20073768(+)$1	227	18	22	12.0000
GCCC	chr12:19592491-19592784(+)$1	293	16	20	12.0000
GCCC	chr9:101558572-101558850(-)$1	278	94	98	12.0000
GCCC	chr9:101558650-101558912(-)$1	262	1	5	12.0000
GCCC	chr3:49055820-49056130(-)$1	310	55	59	12.0000
GCCC	chr12:62996652-62996877(+)$1	225	56	60	12.0000
GCCC	chr8:103424328-103424631(-)$1	303	8	12	12.0000
GCCC	chr5:179248449-179248705(+)$1	256	119	123	12.0000
GCCC	chr19:917368-917661(+)$1	293	20	24	12.0000
GCCC	chr1:234614072-234614332(-)$1	260	185	189	12.0000
GCCC	chr22:20073596-20073818(+)$1	222	173	177	12.0000
GCCC	chr2:27435069-27435327(+)$1	258	37	41	12.0000
GCCC	chr17:41622778-41623041(+)$1	263	50	54	12.0000
GCCC	chr2:219267019-219267245(+)$1	226	5	9	12.0000
GCCC	chr10:120802012-120802296(-)$1	284	72	76	12.0000
gccc	chr2:231902428-231902693(+)$1	265	76	80	12.0000
GCCC	chr12:62996821-62997049(+)$1	228	47	51	12.0000
GCCC	chr17:79860502-79860766(-)$1	264	112	116	12.0000
GCCC	chr12:62997004-62997266(+)$1	262	108	112	12.0000
GCCC	chr14:24901507-24901777(+)$1	270	30	34	12.0000
GCCC	chr6:7581201-7581452(+)$1	251	208	212	12.0000
GCCC	chr14:24901166-24901424(+)$1	258	156	160	12.0000
GCCC	chr22:20073483-20073710(+)$1	227	19	23	12.0000
GCCC	chr16:28878142-28878383(+)$1	241	56	60	12.0000
GCCC	chr9:116984402-116984634(+)$1	232	48	52	12.0000
GCCC	chr3:50103764-50104027(+)$1	263	8	12	12.0000
GCCC	chr19:46522370-46522671(+)$1	301	276	280	12.0000
GCCC	chr12:62996677-62996969(+)$1	292	31	35	12.0000
GCCC	chr3:49049769-49049982(+)$1	213	113	117	12.0000
GCCC	chr22:20073618-20073850(+)$1	232	151	155	12.0000
GCCC	chr12:62996802-62997021(+)$1	219	66	70	12.0000
GCCC	chr7:150935332-150935609(+)$1	277	0	4	12.0000
GCCC	chr17:36760601-36760863(-)$1	262	13	17	12.0000
GCCC	chr6:56334845-56335176(-)$1	331	188	192	12.0000
GCCC	chr1:19441218-19441471(-)$1	253	89	93	12.0000
GCCC	chr22:20073510-20073741(+)$1	231	14	18	12.0000
GCCC	chr12:62996849-62997072(+)$1	223	19	23	12.0000
GCCC	chr7:150935603-150935845(+)$1	242	45	49	12.0000
GCCC	chr2:54197724-54198040(-)$1	316	52	56	12.0000
GCCC	chr4:1804673-1804902(+)$1	229	107	111	12.0000
GCCC	chr12:104332081-104332335(+)$1	254	53	57	12.0000
gccc	chr9:101558430-101558693(-)$1	263	87	91	12.0000
GCCC	chr22:20073460-20073683(+)$1	223	42	46	12.0000
GCCC	chr12:62996872-62997155(+)$1	283	63	67	12.0000
GCCC	chr1:27320160-27320412(+)$1	252	145	149	12.0000
GCCC	chr12:62996785-62997002(+)$1	217	83	87	12.0000
GCCC	chr16:2580589-2580922(+)$1	333	60	64	12.0000
GCCC	chr22:20073745-20073984(+)$1	239	24	28	12.0000
GCCC	chr2:219265477-219265718(+)$1	241	41	45	12.0000
GCCC	chr3:184044979-184045233(+)$1	254	186	190	12.0000
GCCC	chr19:798434-798702(+)$1	268	69	73	12.0000
GCCC	chr11:57564218-57564487(+)$1	269	15	19	12.0000
gccc	chrX:48814597-48814832(-)$1	235	65	69	12.0000
GCCC	chr7:150935456-150935697(+)$1	241	35	39	12.0000
GCCC	chr3:49050843-49051138(+)$1	295	286	290	12.0000
GCCC	chr2:54856728-54856971(+)$1	243	90	94	12.0000
GCCC	chr16:30205863-30206161(+)$1	298	240	244	12.0000
GCCC	chr7:11022475-11022744(+)$1	269	192	196	12.0000
gccc	chr1:1284336-1284625(-)$1	289	46	50	12.0000
GCCC	chr3:49050094-49050362(+)$1	268	202	206	12.0000
GCCC	chr7:150935645-150935908(+)$1	263	3	7	12.0000
GCCC	chr22:20073885-20074174(+)$1	289	58	62	12.0000

#otherMatches

#Struct PSSM
dddd	chr22:20073651-20073904(+)$1	253	118	122	12.0000
FFFK	chr3:49051134-49051365(+)$1	231	40	44	12.0000
==[b	chr2:231902590-231902854(+)$1	264	41	45	12.0000
bb[g	chr22:20073375-20073639(+)$1	264	14	18	12.0000
elll	chr22:20073439-20073660(+)$1	221	63	67	12.0000
ffff	chr3:49050193-49050494(+)$1	301	103	107	12.0000
ff!!	chr16:28877649-28877919(+)$1	270	6	10	12.0000
bb::	chr1:19487406-19487667(-)$1	261	196	200	12.0000
mmmm	chr17:8108125-8108364(-)$1	239	28	32	12.0000
cccD	chr10:70481251-70481487(+)$1	236	17	21	12.0000
eeee	chr2:166771761-166772018(-)$1	257	165	169	12.0000
EEEE	chr22:20074000-20074330(+)$1	330	217	221	12.0000
ffff	chr12:72056738-72057002(-)$1	264	187	191	12.0000
3ddd	chr1:36788404-36788682(+)$1	278	138	142	12.0000
eeee	chrX:48814295-48814548(-)$1	253	29	33	12.0000
dddd	chr5:179046223-179046484(-)$1	261	40	44	12.0000
F}EE	chr7:77166718-77166983(+)$1	265	229	233	12.0000
fffd	chr7:150935257-150935515(+)$1	258	75	79	12.0000
ddcc	chr22:20073784-20074049(+)$1	265	159	163	12.0000
]ccc	chr13:113863808-113864055(+)$1	247	125	129	12.0000
eeee	chr17:79972868-79973103(+)$1	235	24	28	12.0000
CCBB	chr2:231902493-231902754(+)$1	261	11	15	12.0000
gg##	chr17:80197785-80198011(+)$1	226	6	10	12.0000
iiii	chrX:53581753-53581989(-)$1	236	72	76	12.0000
ff^^	chr22:20073541-20073768(+)$1	227	18	22	12.0000
MMII	chr12:19592491-19592784(+)$1	293	16	20	12.0000
====	chr9:101558572-101558850(-)$1	278	94	98	12.0000
BBDD	chr9:101558650-101558912(-)$1	262	1	5	12.0000
BBMM	chr3:49055820-49056130(-)$1	310	55	59	12.0000
!ccc	chr12:62996652-62996877(+)$1	225	56	60	12.0000
DDD:	chr8:103424328-103424631(-)$1	303	8	12	12.0000
EEEE	chr5:179248449-179248705(+)$1	256	119	123	12.0000
cccc	chr19:917368-917661(+)$1	293	20	24	12.0000
DDDD	chr1:234614072-234614332(-)$1	260	185	189	12.0000
DDD}	chr22:20073596-20073818(+)$1	222	173	177	12.0000
bb:b	chr2:27435069-27435327(+)$1	258	37	41	12.0000
dddd	chr17:41622778-41623041(+)$1	263	50	54	12.0000
CCCD	chr2:219267019-219267245(+)$1	226	5	9	12.0000
DDNN	chr10:120802012-120802296(-)$1	284	72	76	12.0000
dddd	chr2:231902428-231902693(+)$1	265	76	80	12.0000
GGGG	chr12:62996821-62997049(+)$1	228	47	51	12.0000
gggg	chr17:79860502-79860766(-)$1	264	112	116	12.0000
F}DD	chr12:62997004-62997266(+)$1	262	108	112	12.0000
3ddd	chr14:24901507-24901777(+)$1	270	30	34	12.0000
4ddd	chr6:7581201-7581452(+)$1	251	208	212	12.0000
[eee	chr14:24901166-24901424(+)$1	258	156	160	12.0000
elll	chr22:20073483-20073710(+)$1	227	19	23	12.0000
hhhh	chr16:28878142-28878383(+)$1	241	56	60	12.0000
ddee	chr9:116984402-116984634(+)$1	232	48	52	12.0000
bbqq	chr3:50103764-50104027(+)$1	263	8	12	12.0000
leee	chr19:46522370-46522671(+)$1	301	276	280	12.0000
!ccc	chr12:62996677-62996969(+)$1	292	31	35	12.0000
ccca	chr3:49049769-49049982(+)$1	213	113	117	12.0000
||||	chr22:20073618-20073850(+)$1	232	151	155	12.0000
hhhh	chr12:62996802-62997021(+)$1	219	66	70	12.0000
CCCL	chr7:150935332-150935609(+)$1	277	0	4	12.0000
BBFF	chr17:36760601-36760863(-)$1	262	13	17	12.0000
^^^^	chr6:56334845-56335176(-)$1	331	188	192	12.0000
cccc	chr1:19441218-19441471(-)$1	253	89	93	12.0000
EEEE	chr22:20073510-20073741(+)$1	231	14	18	12.0000
ffff	chr12:62996849-62997072(+)$1	223	19	23	12.0000
eeee	chr7:150935603-150935845(+)$1	242	45	49	12.0000
dddd	chr2:54197724-54198040(-)$1	316	52	56	12.0000
DLLL	chr4:1804673-1804902(+)$1	229	107	111	12.0000
::bb	chr12:104332081-104332335(+)$1	254	53	57	12.0000
ddhh	chr9:101558430-101558693(-)$1	263	87	91	12.0000
elll	chr22:20073460-20073683(+)$1	223	42	46	12.0000
ii!!	chr12:62996872-62997155(+)$1	283	63	67	12.0000
iiii	chr1:27320160-27320412(+)$1	252	145	149	12.0000
ffff	chr12:62996785-62997002(+)$1	217	83	87	12.0000
ffff	chr16:2580589-2580922(+)$1	333	60	64	12.0000
C{FF	chr22:20073745-20073984(+)$1	239	24	28	12.0000
{DDD	chr2:219265477-219265718(+)$1	241	41	45	12.0000
dccc	chr3:184044979-184045233(+)$1	254	186	190	12.0000
cccc	chr19:798434-798702(+)$1	268	69	73	12.0000
ffff	chr11:57564218-57564487(+)$1	269	15	19	12.0000
====	chrX:48814597-48814832(-)$1	235	65	69	12.0000
eeep	chr7:150935456-150935697(+)$1	241	35	39	12.0000
dddd	chr3:49050843-49051138(+)$1	295	286	290	12.0000
]acc	chr2:54856728-54856971(+)$1	243	90	94	12.0000
hhhb	chr16:30205863-30206161(+)$1	298	240	244	12.0000
hhhh	chr7:11022475-11022744(+)$1	269	192	196	12.0000
hhhh	chr1:1284336-1284625(-)$1	289	46	50	12.0000
GGGG	chr3:49050094-49050362(+)$1	268	202	206	12.0000
DLLL	chr7:150935645-150935908(+)$1	263	3	7	12.0000
DDBB	chr22:20073885-20074174(+)$1	289	58	62	12.0000

#DB
))))	chr22:20073651-20073904(+)$1	1	118	122	12.0000
(((.	chr3:49051134-49051365(+)$1	1	40	44	12.0000
((.(	chr2:231902590-231902854(+)$1	1	41	45	12.0000
((.(	chr22:20073375-20073639(+)$1	1	14	18	12.0000
(...	chr22:20073439-20073660(+)$1	1	63	67	12.0000
((((	chr3:49050193-49050494(+)$1	1	103	107	12.0000
((..	chr16:28877649-28877919(+)$1	1	6	10	12.0000
))..	chr1:19487406-19487667(-)$1	1	196	200	12.0000
....	chr17:8108125-8108364(-)$1	1	28	32	12.0000
)))(	chr10:70481251-70481487(+)$1	1	17	21	12.0000
((((	chr2:166771761-166772018(-)$1	1	165	169	12.0000
))))	chr22:20074000-20074330(+)$1	1	217	221	12.0000
))))	chr12:72056738-72057002(-)$1	1	187	191	12.0000
.)))	chr1:36788404-36788682(+)$1	1	138	142	12.0000
((((	chrX:48814295-48814548(-)$1	1	29	33	12.0000
))))	chr5:179046223-179046484(-)$1	1	40	44	12.0000
).))	chr7:77166718-77166983(+)$1	1	229	233	12.0000
)))(	chr7:150935257-150935515(+)$1	1	75	79	12.0000
))))	chr22:20073784-20074049(+)$1	1	159	163	12.0000
.)))	chr13:113863808-113864055(+)$1	1	125	129	12.0000
((((	chr17:79972868-79973103(+)$1	1	24	28	12.0000
((((	chr2:231902493-231902754(+)$1	1	11	15	12.0000
((..	chr17:80197785-80198011(+)$1	1	6	10	12.0000
))))	chrX:53581753-53581989(-)$1	1	72	76	12.0000
((..	chr22:20073541-20073768(+)$1	1	18	22	12.0000
..((	chr12:19592491-19592784(+)$1	1	16	20	12.0000
((((	chr9:101558572-101558850(-)$1	1	94	98	12.0000
((((	chr9:101558650-101558912(-)$1	1	1	5	12.0000
((..	chr3:49055820-49056130(-)$1	1	55	59	12.0000
.(((	chr12:62996652-62996877(+)$1	1	56	60	12.0000
(((.	chr8:103424328-103424631(-)$1	1	8	12	12.0000
))))	chr5:179248449-179248705(+)$1	1	119	123	12.0000
((((	chr19:917368-917661(+)$1	1	20	24	12.0000
))))	chr1:234614072-234614332(-)$1	1	185	189	12.0000
))).	chr22:20073596-20073818(+)$1	1	173	177	12.0000
)).(	chr2:27435069-27435327(+)$1	1	37	41	12.0000
))))	chr17:41622778-41623041(+)$1	1	50	54	12.0000
((((	chr2:219267019-219267245(+)$1	1	5	9	12.0000
((..	chr10:120802012-120802296(-)$1	1	72	76	12.0000
))))	chr2:231902428-231902693(+)$1	1	76	80	12.0000
((((	chr12:62996821-62997049(+)$1	1	47	51	12.0000
))))	chr17:79860502-79860766(-)$1	1	112	116	12.0000
).))	chr12:62997004-62997266(+)$1	1	108	112	12.0000
.)))	chr14:24901507-24901777(+)$1	1	30	34	12.0000
.)))	chr6:7581201-7581452(+)$1	1	208	212	12.0000
.(((	chr14:24901166-24901424(+)$1	1	156	160	12.0000
(...	chr22:20073483-20073710(+)$1	1	19	23	12.0000
))))	chr16:28878142-28878383(+)$1	1	56	60	12.0000
))))	chr9:116984402-116984634(+)$1	1	48	52	12.0000
((..	chr3:50103764-50104027(+)$1	1	8	12	12.0000
.)))	chr19:46522370-46522671(+)$1	1	276	280	12.0000
.(((	chr12:62996677-62996969(+)$1	1	31	35	12.0000
((((	chr3:49049769-49049982(+)$1	1	113	117	12.0000
....	chr22:20073618-20073850(+)$1	1	151	155	12.0000
((((	chr12:62996802-62997021(+)$1	1	66	70	12.0000
(((.	chr7:150935332-150935609(+)$1	1	0	4	12.0000
((((	chr17:36760601-36760863(-)$1	1	13	17	12.0000
....	chr6:56334845-56335176(-)$1	1	188	192	12.0000
))((	chr1:19441218-19441471(-)$1	1	89	93	12.0000
((((	chr22:20073510-20073741(+)$1	1	14	18	12.0000
((((	chr12:62996849-62997072(+)$1	1	19	23	12.0000
))))	chr7:150935603-150935845(+)$1	1	45	49	12.0000
))))	chr2:54197724-54198040(-)$1	1	52	56	12.0000
(...	chr4:1804673-1804902(+)$1	1	107	111	12.0000
..((	chr12:104332081-104332335(+)$1	1	53	57	12.0000
((((	chr9:101558430-101558693(-)$1	1	87	91	12.0000
(...	chr22:20073460-20073683(+)$1	1	42	46	12.0000
((..	chr12:62996872-62997155(+)$1	1	63	67	12.0000
))))	chr1:27320160-27320412(+)$1	1	145	149	12.0000
((((	chr12:62996785-62997002(+)$1	1	83	87	12.0000
((((	chr16:2580589-2580922(+)$1	1	60	64	12.0000
(.((	chr22:20073745-20073984(+)$1	1	24	28	12.0000
.(((	chr2:219265477-219265718(+)$1	1	41	45	12.0000
((((	chr3:184044979-184045233(+)$1	1	186	190	12.0000
((((	chr19:798434-798702(+)$1	1	69	73	12.0000
((((	chr11:57564218-57564487(+)$1	1	15	19	12.0000
((((	chrX:48814597-48814832(-)$1	1	65	69	12.0000
(((.	chr7:150935456-150935697(+)$1	1	35	39	12.0000
))))	chr3:49050843-49051138(+)$1	1	286	290	12.0000
.)))	chr2:54856728-54856971(+)$1	1	90	94	12.0000
((((	chr16:30205863-30206161(+)$1	1	240	244	12.0000
((((	chr7:11022475-11022744(+)$1	1	192	196	12.0000
))))	chr1:1284336-1284625(-)$1	1	46	50	12.0000
))))	chr3:49050094-49050362(+)$1	1	202	206	12.0000
(...	chr7:150935645-150935908(+)$1	1	3	7	12.0000
((((	chr22:20073885-20074174(+)$1	1	58	62	12.0000

#PSSM
G : 0.94	g : 0.05	
C : 0.94	c : 0.05	
C : 0.94	c : 0.05	
C : 0.94	c : 0.05	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_UTR_m3_run1.nuc.txt

#NT
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152546-2152756(-)$1	210	30	66	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152609-2152815(-)$1	206	89	125	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152652-2152858(-)$1	206	132	168	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152671-2152875(-)$1	204	149	185	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152629-2152834(-)$1	205	108	144	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152592-2152805(-)$1	213	79	115	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152564-2152766(-)$1	202	40	76	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152639-2152844(-)$1	205	118	154	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152578-2152782(-)$1	204	56	92	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152566-2152768(-)$1	202	42	78	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152648-2152852(-)$1	204	126	162	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152556-2152764(-)$1	208	38	74	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152568-2152776(-)$1	208	50	86	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152524-2152727(-)$1	203	1	37	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152616-2152819(-)$1	203	93	129	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152541-2152746(-)$1	205	20	56	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152634-2152839(-)$1	205	113	149	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152584-2152792(-)$1	208	66	102	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152582-2152784(-)$1	202	58	94	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152680-2152890(-)$1	210	164	200	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152663-2152870(-)$1	207	144	180	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152619-2152822(-)$1	203	96	132	107.9999
cacacaaacacgcagcacacacguugcacacgcaag	chr11:2152627-2152829(-)$1	202	103	139	107.9999

#otherMatches

#Struct PSSM
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152622-2152827(-)$1	205	101	137	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152546-2152756(-)$1	210	30	66	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152609-2152815(-)$1	206	89	125	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152652-2152858(-)$1	206	132	168	107.9999
c::::::::::eeeeeooooooeeeee::::BB::c	chr11:2152671-2152875(-)$1	204	149	185	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152629-2152834(-)$1	205	108	144	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152592-2152805(-)$1	213	79	115	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152564-2152766(-)$1	202	40	76	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152639-2152844(-)$1	205	118	154	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152578-2152782(-)$1	204	56	92	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152566-2152768(-)$1	202	42	78	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152648-2152852(-)$1	204	126	162	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152556-2152764(-)$1	208	38	74	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152568-2152776(-)$1	208	50	86	107.9999
::::::DDDD:eeeeeooooooeeeee::::::::c	chr11:2152524-2152727(-)$1	203	1	37	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152616-2152819(-)$1	203	93	129	107.9999
A::::::::::eeeeeooooooeeeee::::::::c	chr11:2152541-2152746(-)$1	205	20	56	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152634-2152839(-)$1	205	113	149	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152584-2152792(-)$1	208	66	102	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152582-2152784(-)$1	202	58	94	107.9999
c::::::::::eeeeeooooooeeeee::::BB:::	chr11:2152680-2152890(-)$1	210	164	200	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152663-2152870(-)$1	207	144	180	107.9999
c::::::::::eeeeeooooooeeeee::::::::c	chr11:2152619-2152822(-)$1	203	96	132	107.9999
c::::::::::eeeeeooooooeeeee::::CCC:c	chr11:2152627-2152829(-)$1	202	103	139	107.9999

#DB
)..........(((((......)))))........(	chr11:2152622-2152827(-)$1	1	101	137	107.9999
)..........(((((......)))))........(	chr11:2152546-2152756(-)$1	1	30	66	107.9999
)..........(((((......)))))........(	chr11:2152609-2152815(-)$1	1	89	125	107.9999
)..........(((((......)))))........(	chr11:2152652-2152858(-)$1	1	132	168	107.9999
)..........(((((......)))))....))..(	chr11:2152671-2152875(-)$1	1	149	185	107.9999
)..........(((((......)))))........(	chr11:2152629-2152834(-)$1	1	108	144	107.9999
)..........(((((......)))))........(	chr11:2152592-2152805(-)$1	1	79	115	107.9999
)..........(((((......)))))........(	chr11:2152564-2152766(-)$1	1	40	76	107.9999
)..........(((((......)))))........(	chr11:2152639-2152844(-)$1	1	118	154	107.9999
)..........(((((......)))))........(	chr11:2152578-2152782(-)$1	1	56	92	107.9999
)..........(((((......)))))........(	chr11:2152566-2152768(-)$1	1	42	78	107.9999
)..........(((((......)))))........(	chr11:2152648-2152852(-)$1	1	126	162	107.9999
)..........(((((......)))))........(	chr11:2152556-2152764(-)$1	1	38	74	107.9999
)..........(((((......)))))........(	chr11:2152568-2152776(-)$1	1	50	86	107.9999
......((((.(((((......)))))........(	chr11:2152524-2152727(-)$1	1	1	37	107.9999
)..........(((((......)))))........(	chr11:2152616-2152819(-)$1	1	93	129	107.9999
(..........(((((......)))))........(	chr11:2152541-2152746(-)$1	1	20	56	107.9999
)..........(((((......)))))........(	chr11:2152634-2152839(-)$1	1	113	149	107.9999
)..........(((((......)))))........(	chr11:2152584-2152792(-)$1	1	66	102	107.9999
)..........(((((......)))))........(	chr11:2152582-2152784(-)$1	1	58	94	107.9999
)..........(((((......)))))....))...	chr11:2152680-2152890(-)$1	1	164	200	107.9999
)..........(((((......)))))........(	chr11:2152663-2152870(-)$1	1	144	180	107.9999
)..........(((((......)))))........(	chr11:2152619-2152822(-)$1	1	96	132	107.9999
)..........(((((......)))))....))).(	chr11:2152627-2152829(-)$1	1	103	139	107.9999

#PSSM
c : 0.99	
a : 0.99	
c : 0.99	
a : 0.99	
c : 0.99	
a : 0.99	
a : 0.99	
a : 0.99	
c : 0.99	
a : 0.99	
c : 0.99	
g : 0.99	
c : 0.99	
a : 0.99	
g : 0.99	
c : 0.99	
a : 0.99	
c : 0.99	
a : 0.99	
c : 0.99	
a : 0.99	
c : 0.99	
g : 0.99	
u : 0.99	
u : 0.99	
g : 0.99	
c : 0.99	
a : 0.99	
c : 0.99	
a : 0.99	
c : 0.99	
g : 0.99	
c : 0.99	
a : 0.99	
a : 0.99	
g : 0.99	

#score	2591.9999999999995
#seq	24
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_transcript_m3_run1.nuc.txt

#NT
gugugugugugagugaauguuguguguguguauaugugcgcgagagcgugcauauguuguguguguguaugucguguaugugagaggguauguugugugugagaguguguuguguguguauguugugugaguauauguuguguguaucuugugugugaguguauguuguguguuguguguguaucuugugcauguguguauguugugcgaguguauguuguguaugugaguguguguauguuguguguauguuguguguauguauguuguguaugaguguguguauguuguguguguguacguuguguauguug	chr17:7016816-7017135(-)$1	319	5	319	582.0000

#otherMatches

#Struct PSSM
fpppppppffffff::::::::::::::::::::::BB{A{EEEEE{FFFFFF{A{CCC{A::::::::::::::===========nnnnn===========:::::::::::::::::::::::ffffff[eeeeeooooooeeeee]ffffff::::::::::::::::::::::::::::::::::ggggggg^^^^^^^^^^^^^^^^^^^^ggggggg:::::::::::::::::a[bb!!a[ccc[ccc[a[bbwwwwwwwwwwwwwwbb]a]ccc]ccc]a22bb]a::A}CCC}A}FFFFFF}EEE	chr17:7016548-7016895(-)$1	347	16	330	582.0000
:::::::::::::::::::::::::::JJJJJJJJJJJJJJJJJJ==========ppppppp==========ggggggg"""a[bb[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]bb]a4444ggggggg::::::ddddcccooooooccc]dddd:::::::::::::::::::JJJJJJJJJJJJJJJJJJ:::eeeee####dddd[hhhhhhhh!!a[a!!ggggggg[iiiiiiiiipppppppiiiiiiiii]ggggggg]a]a]hhhhhhhh]dddd4444eeeee:::::::::::::	chr17:7016816-7017135(-)$1	319	5	319	582.0000

#DB
(.......))))))......................((.(.(((((.((((((.(.(((.(..............(((((((((((.....))))))))))).......................((((((.(((((......))))).))))))..................................(((((((....................))))))).................(.((..(.(((.(((.(.((..............)).).))).))).)..)).)..).))).).)))))).)))	chr17:7016548-7016895(-)$1	1	16	330	582.0000
...........................((((((((((((((((((((((((((((.......))))))))))(((((((...(.((.((((..........................)))).)).)....)))))))......(((((((......))).))))...................))))))))))))))))))...(((((....((((.((((((((..(.(..(((((((.(((((((((.......))))))))).))))))).).).)))))))).))))....))))).............	chr17:7016816-7017135(-)$1	1	5	319	582.0000

#PSSM
u : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 0.50	a : 0.50	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 0.50	a : 0.50	
u : 0.50	a : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
a : 0.50	u : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
g : 0.50	c : 0.50	
u : 0.50	g : 0.50	
g : 0.50	c : 0.50	
u : 0.50	g : 0.50	
g : 0.50	a : 0.50	
u : 0.50	g : 0.50	
g : 0.50	a : 0.50	
u : 0.50	g : 0.50	
g : 0.50	c : 0.50	
u : 0.50	g : 0.50	
a : 0.50	u : 0.50	
c : 0.50	g : 0.50	
g : 0.50	c : 0.50	
u : 0.50	a : 0.50	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
a : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
u : 0.50	c : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 0.50	a : 0.50	
a : 0.50	g : 0.50	
u : 0.50	a : 0.50	
u : 0.50	g : 0.50	
g : 1.00	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	a : 0.50	
g : 0.50	u : 0.50	
a : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
a : 0.50	g : 0.50	
u : 0.50	a : 0.50	
g : 1.00	
u : 0.50	a : 0.50	
u : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
a : 0.50	u : 0.50	
g : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 0.50	g : 0.50	
u : 0.50	a : 0.50	
g : 1.00	
u : 1.00	
u : 0.50	a : 0.50	
g : 0.50	u : 0.50	
u : 0.50	a : 0.50	
g : 0.50	u : 0.50	
c : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
c : 0.50	u : 0.50	
g : 1.00	
a : 0.50	u : 0.50	
g : 1.00	
u : 0.50	a : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
a : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
a : 0.50	u : 0.50	
g : 0.50	c : 0.50	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
u : 0.50	c : 0.50	
a : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
u : 0.50	a : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 0.50	c : 0.50	
g : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
c : 0.50	u : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
a : 0.50	u : 0.50	
g : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 0.50	a : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
a : 0.50	u : 0.50	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
a : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
a : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	a : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	a : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	u : 0.50	
G : 0.50	u : 0.50	
U : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
U : 0.50	a : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	u : 0.50	
C : 0.50	g : 0.50	
G : 0.50	u : 0.50	
U : 0.50	a : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	u : 0.50	
C : 0.50	u : 0.50	
A : 0.50	g : 0.50	

#score	1164.0
#seq	2
#width	314
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_transcript_m2_run2.nuc.txt

#NT
UGUUUCU	chr11:122929568-122929786(-)$1	218	23	30	12.6935
UUUAUCU	chr17:64224115-64224331(-)$1	216	142	149	13.0161
UUUUUCC	chr20:47896770-47896988(+)$1	218	109	116	12.7741
UUCUUCU	chr5:137896695-137896900(-)$1	205	187	194	12.7741
UUUUUCU	chr11:10823012-10823255(-)$1	243	160	167	16.8064
UUUUUUU	chr1:45242067-45242297(+)$1	230	37	44	12.6129
UUUUGCU	chr17:2233476-2233762(-)$1	286	43	50	12.2096
UUUUUCC	chr2:234184271-234184477(+)$1	206	180	187	12.7741
UUUUUCC	chr4:83816913-83817180(-)$1	267	116	123	12.7741
UCUUUCU	chr2:216272732-216272935(-)$1	203	1	8	12.7741
CUUUUCU	chr20:2637487-2637751(+)$1	264	224	231	12.6129
AUUUUCU	chr11:62622026-62622260(-)$1	234	6	13	12.6935
UUUUUUU	chr4:83819210-83819476(-)$1	266	14	21	12.6129
UUUUUCU	chr16:70571807-70572093(+)$1	286	149	156	16.8064
UCUUUCU	chr3:186337561-186337798(+)$1	237	67	74	12.7741
UUUUUCC	chr20:47895395-47895617(+)$1	222	105	112	12.7741
GUUUUCU	chr17:16344436-16344640(+)$1	204	165	172	13.0161
UGUUUCU	chr18:47015528-47015779(-)$1	251	199	206	12.6935
UUCUUCU	chr13:27829114-27829339(+)$1	225	47	54	12.7741
UUUUACU	chrX:20154350-20154621(-)$1	271	105	112	12.2903
UUUUUUU	chr15:25230146-25230397(+)$1	251	45	52	12.6129
GUUUUCU	chr6:31804781-31804985(+)$1	204	7	14	13.0161
UUUGUCU	chr11:75115438-75115678(+)$1	240	158	165	13.0161
guuuucu	chr17:18965281-18965551(+)$1	270	38	45	13.0161
UUGUUCU	chr3:186502495-186502727(+)$1	232	17	24	13.0161
UUUUUCU	chr6:86386949-86387187(-)$1	238	56	63	16.8064
UGUUUCU	chr10:101996729-101997001(-)$1	272	171	178	12.6935
UUGUUCU	chr2:216246836-216247078(-)$1	242	185	192	13.0161
UUUUUCU	chr2:203142737-203142983(+)$1	246	44	51	16.8064
UUUUUCU	chr11:62621299-62621532(-)$1	233	216	223	16.8064
UUUUUCC	chr20:47896788-47896996(+)$1	208	91	98	12.7741
UUUUUCU	chr2:203155957-203156200(+)$1	243	91	98	16.8064
UUUUUCC	chr20:47895418-47895647(+)$1	229	82	89	12.7741
UUUCUCU	chr17:7480027-7480293(+)$1	266	80	87	12.9354
UAUUUCU	chr1:173835024-173835260(-)$1	236	218	225	12.5322
UUUGUCU	chr20:47897124-47897327(+)$1	203	167	174	13.0161
GUUUUCU	chr17:27047501-27047732(+)$1	231	201	208	13.0161
UUUUUCU	chr3:133475025-133475272(+)$1	247	206	213	16.8064
UUUAUCU	chr9:136217611-136217859(+)$1	248	76	83	13.0161
AUUUUCU	chr11:62622060-62622267(-)$1	207	13	20	12.6935
uuuuccu	chr11:17097281-17097502(-)$1	221	134	141	12.2096
GUUUUCU	chr6:31804777-31804981(+)$1	204	11	18	13.0161
UUGUUCU	chr6:31504049-31504261(-)$1	212	23	30	13.0161
UUUGUCU	chr20:47897166-47897386(+)$1	220	125	132	13.0161
UUUCUCU	chr1:76253472-76253675(+)$1	203	67	74	12.9354
UUUCUCU	chr8:11704493-11704767(-)$1	274	169	176	12.9354
UUUUUCU	chr2:216248653-216248935(-)$1	282	267	274	16.8064
UCUUUCU	chr19:49994063-49994323(+)$1	260	219	226	12.7741
UUCUUCU	chr13:27829103-27829314(+)$1	211	58	65	12.7741
UUGUUCU	chr2:216236535-216236781(-)$1	246	158	165	13.0161
UUGUUCU	chr6:31504078-31504296(-)$1	218	58	65	13.0161
UUGUUCU	chr9:136216150-136216392(+)$1	242	81	88	13.0161
UUUAUCU	chr9:125642442-125642682(-)$1	240	44	51	13.0161
UUUUUCU	chr15:66794278-66794506(-)$1	228	203	210	16.8064
UUUUUUU	chr9:33952674-33952942(-)$1	268	187	194	12.6129
uuuuuuu	chr17:74557662-74557880(+)$1	218	141	148	12.6129
UUUAUCU	chr9:125642402-125642642(-)$1	240	4	11	13.0161
UCUUUCU	chr2:216261766-216262039(-)$1	273	80	87	12.7741
GUUUUCU	chr6:31804750-31804954(+)$1	204	38	45	13.0161
UUUUUCU	chrX:135961293-135961532(-)$1	239	227	234	16.8064
UUUUACU	chr1:76252655-76252859(+)$1	204	42	49	12.2903

#otherMatches

#Struct PSSM
::DDDD:	chr11:75111334-75111576(+)$1	242	234	241	13.0161
!ccc"""	chr11:122929568-122929786(-)$1	218	23	30	12.6935
ggggggg	chr17:64224115-64224331(-)$1	216	142	149	13.0161
d++++++	chr20:47896770-47896988(+)$1	218	109	116	12.7741
oeeeee:	chr5:137896695-137896900(-)$1	205	187	194	12.7741
^^^^^^^	chr11:10823012-10823255(-)$1	243	160	167	16.8064
dpppppp	chr1:45242067-45242297(+)$1	230	37	44	12.6129
ffffffb	chr17:2233476-2233762(-)$1	286	43	50	12.2096
:::::::	chr2:234184271-234184477(+)$1	206	180	187	12.7741
eeeeeee	chr4:83816913-83817180(-)$1	267	116	123	12.7741
:::::::	chr2:216272732-216272935(-)$1	203	1	8	12.7741
bbhhhhh	chr20:2637487-2637751(+)$1	264	224	231	12.6129
mmddddd	chr11:62622026-62622260(-)$1	234	6	13	12.6935
:HHHHHH	chr4:83819210-83819476(-)$1	266	14	21	12.6129
e::::EE	chr16:70571807-70572093(+)$1	286	149	156	16.8064
WWWWWWW	chr3:186337561-186337798(+)$1	237	67	74	12.7741
:GGGGGG	chr20:47895395-47895617(+)$1	222	105	112	12.7741
F?????E	chr17:16344436-16344640(+)$1	204	165	172	13.0161
qqqqqqq	chr18:47015528-47015779(-)$1	251	199	206	12.6935
]eeeee:	chr13:27829114-27829339(+)$1	225	47	54	12.7741
===mmmm	chrX:20154350-20154621(-)$1	271	105	112	12.2903
^^^^^^^	chr15:25230146-25230397(+)$1	251	45	52	12.6129
:::dddd	chr6:31804781-31804985(+)$1	204	7	14	13.0161
qqqqeee	chr11:75115438-75115678(+)$1	240	158	165	13.0161
ffffooo	chr17:18965281-18965551(+)$1	270	38	45	13.0161
GGGGEEE	chr3:186502495-186502727(+)$1	232	17	24	13.0161
$$$$bb"	chr6:86386949-86387187(-)$1	238	56	63	16.8064
ggooooo	chr10:101996729-101997001(-)$1	272	171	178	12.6935
FFFFbb[	chr2:216246836-216247078(-)$1	242	185	192	13.0161
FFFFFF:	chr2:203142737-203142983(+)$1	246	44	51	16.8064
FYYGGGG	chr11:62621299-62621532(-)$1	233	216	223	16.8064
d++++++	chr20:47896788-47896996(+)$1	208	91	98	12.7741
2ffffff	chr2:203155957-203156200(+)$1	243	91	98	16.8064
:GGGGGG	chr20:47895418-47895647(+)$1	229	82	89	12.7741
ggg22a]	chr17:7480027-7480293(+)$1	266	80	87	12.9354
qqqqqqq	chr1:173835024-173835260(-)$1	236	218	225	12.5322
:ccc[cc	chr20:47897124-47897327(+)$1	203	167	174	13.0161
b::::::	chr17:27047501-27047732(+)$1	231	201	208	13.0161
=======	chr3:133475025-133475272(+)$1	247	206	213	16.8064
WWWWWWW	chr9:136217611-136217859(+)$1	248	76	83	13.0161
::::::d	chr11:62622060-62622267(-)$1	207	13	20	12.6935
ggg[ccc	chr11:17097281-17097502(-)$1	221	134	141	12.2096
dd[cccl	chr6:31804777-31804981(+)$1	204	11	18	13.0161
JJJJJJJ	chr6:31504049-31504261(-)$1	212	23	30	13.0161
DDDDYYA	chr20:47897166-47897386(+)$1	220	125	132	13.0161
]gggggg	chr1:76253472-76253675(+)$1	203	67	74	12.9354
c55555d	chr8:11704493-11704767(-)$1	274	169	176	12.9354
YFFFFFF	chr2:216248653-216248935(-)$1	282	267	274	16.8064
>>>>>>>	chr19:49994063-49994323(+)$1	260	219	226	12.7741
ccc]bb]	chr13:27829103-27829314(+)$1	211	58	65	12.7741
ffeeeee	chr2:216236535-216236781(-)$1	246	158	165	13.0161
JJJJJJJ	chr6:31504078-31504296(-)$1	218	58	65	13.0161
555ffff	chr9:136216150-136216392(+)$1	242	81	88	13.0161
:::::::	chr9:125642442-125642682(-)$1	240	44	51	13.0161
/FFFFFF	chr15:66794278-66794506(-)$1	228	203	210	16.8064
hhhhhh]	chr9:33952674-33952942(-)$1	268	187	194	12.6129
^^^^^^^	chr17:74557662-74557880(+)$1	218	141	148	12.6129
:::::::	chr9:125642402-125642642(-)$1	240	4	11	13.0161
ggggggg	chr2:216261766-216262039(-)$1	273	80	87	12.7741
eeeee55	chr6:31804750-31804954(+)$1	204	38	45	13.0161
:::::::	chrX:135961293-135961532(-)$1	239	227	234	16.8064
=====[c	chr1:76252655-76252859(+)$1	204	42	49	12.2903

#DB
..)))).	chr11:75111334-75111576(+)$1	1	234	241	13.0161
.(((...	chr11:122929568-122929786(-)$1	1	23	30	12.6935
)))))))	chr17:64224115-64224331(-)$1	1	142	149	13.0161
(......	chr20:47896770-47896988(+)$1	1	109	116	12.7741
.))))).	chr5:137896695-137896900(-)$1	1	187	194	12.7741
.......	chr11:10823012-10823255(-)$1	1	160	167	16.8064
(......	chr1:45242067-45242297(+)$1	1	37	44	12.6129
(((((((	chr17:2233476-2233762(-)$1	1	43	50	12.2096
.......	chr2:234184271-234184477(+)$1	1	180	187	12.7741
(((((((	chr4:83816913-83817180(-)$1	1	116	123	12.7741
.......	chr2:216272732-216272935(-)$1	1	1	8	12.7741
(((((((	chr20:2637487-2637751(+)$1	1	224	231	12.6129
..))))(	chr11:62622026-62622260(-)$1	1	6	13	12.6935
.((((((	chr4:83819210-83819476(-)$1	1	14	21	12.6129
)....))	chr16:70571807-70572093(+)$1	1	149	156	16.8064
.......	chr3:186337561-186337798(+)$1	1	67	74	12.7741
.((((((	chr20:47895395-47895617(+)$1	1	105	112	12.7741
).....)	chr17:16344436-16344640(+)$1	1	165	172	13.0161
.......	chr18:47015528-47015779(-)$1	1	199	206	12.6935
.))))).	chr13:27829114-27829339(+)$1	1	47	54	12.7741
(((....	chrX:20154350-20154621(-)$1	1	105	112	12.2903
.......	chr15:25230146-25230397(+)$1	1	45	52	12.6129
...((((	chr6:31804781-31804985(+)$1	1	7	14	13.0161
....)))	chr11:75115438-75115678(+)$1	1	158	165	13.0161
((((...	chr17:18965281-18965551(+)$1	1	38	45	13.0161
(((((((	chr3:186502495-186502727(+)$1	1	17	24	13.0161
....((.	chr6:86386949-86387187(-)$1	1	56	63	16.8064
((.....	chr10:101996729-101997001(-)$1	1	171	178	12.6935
))))((.	chr2:216246836-216247078(-)$1	1	185	192	13.0161
((((((.	chr2:203142737-203142983(+)$1	1	44	51	16.8064
)..))))	chr11:62621299-62621532(-)$1	1	216	223	16.8064
(......	chr20:47896788-47896996(+)$1	1	91	98	12.7741
.))))))	chr2:203155957-203156200(+)$1	1	91	98	16.8064
.((((((	chr20:47895418-47895647(+)$1	1	82	89	12.7741
)))..).	chr17:7480027-7480293(+)$1	1	80	87	12.9354
.......	chr1:173835024-173835260(-)$1	1	218	225	12.5322
.(((.((	chr20:47897124-47897327(+)$1	1	167	174	13.0161
)......	chr17:27047501-27047732(+)$1	1	201	208	13.0161
)))))))	chr3:133475025-133475272(+)$1	1	206	213	16.8064
.......	chr9:136217611-136217859(+)$1	1	76	83	13.0161
......(	chr11:62622060-62622267(-)$1	1	13	20	12.6935
(((.(((	chr11:17097281-17097502(-)$1	1	134	141	12.2096
((.(((.	chr6:31804777-31804981(+)$1	1	11	18	13.0161
(((((((	chr6:31504049-31504261(-)$1	1	23	30	13.0161
))))..)	chr20:47897166-47897386(+)$1	1	125	132	13.0161
.))))))	chr1:76253472-76253675(+)$1	1	67	74	12.9354
).....)	chr8:11704493-11704767(-)$1	1	169	176	12.9354
.))))))	chr2:216248653-216248935(-)$1	1	267	274	16.8064
.......	chr19:49994063-49994323(+)$1	1	219	226	12.7741
))).)).	chr13:27829103-27829314(+)$1	1	58	65	12.7741
(((((((	chr2:216236535-216236781(-)$1	1	158	165	13.0161
(((((((	chr6:31504078-31504296(-)$1	1	58	65	13.0161
...))))	chr9:136216150-136216392(+)$1	1	81	88	13.0161
.......	chr9:125642442-125642682(-)$1	1	44	51	13.0161
.))))))	chr15:66794278-66794506(-)$1	1	203	210	16.8064
)))))).	chr9:33952674-33952942(-)$1	1	187	194	12.6129
.......	chr17:74557662-74557880(+)$1	1	141	148	12.6129
.......	chr9:125642402-125642642(-)$1	1	4	11	13.0161
)))))))	chr2:216261766-216262039(-)$1	1	80	87	12.7741
)))))..	chr6:31804750-31804954(+)$1	1	38	45	13.0161
.......	chrX:135961293-135961532(-)$1	1	227	234	16.8064
(((((.(	chr1:76252655-76252859(+)$1	1	42	49	12.2903

#PSSM
U : 0.82	G : 0.08	A : 0.03	u : 0.03	C : 0.01	g : 0.01	
U : 0.82	C : 0.06	G : 0.04	u : 0.04	A : 0.01	
U : 0.80	G : 0.09	C : 0.04	u : 0.04	
U : 0.77	G : 0.06	A : 0.06	u : 0.04	C : 0.04	
U : 0.90	A : 0.03	u : 0.03	G : 0.01	c : 0.01	
C : 0.88	U : 0.06	c : 0.03	u : 0.01	
U : 0.85	C : 0.09	u : 0.04	

#score	833.9354838709668
#seq	62
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_transcript_m1_run2.nuc.txt

#NT
GCAG	chr8:124361425-124361664(-)$1	239	24	28	11.9999
GCAG	chr1:169515584-169515848(-)$1	264	21	25	11.9999
GCAG	chr20:62318958-62319210(+)$1	252	159	163	11.9999
GCAG	chr14:23531612-23531830(-)$1	218	23	27	11.9999
GCAG	chr2:102476163-102476425(+)$1	262	57	61	11.9999
GCAG	chr7:99935712-99935987(+)$1	275	214	218	11.9999
GCAG	chr15:101971530-101971774(-)$1	244	154	158	11.9999
GCAG	chr4:184129035-184129315(+)$1	280	77	81	11.9999
GCAG	chr16:66768012-66768278(-)$1	266	19	23	11.9999
GCAG	chr20:62572056-62572303(-)$1	247	114	118	11.9999
GCAG	chr7:73019989-73020198(-)$1	209	146	150	11.9999
GCAG	chr22:50876961-50877208(+)$1	247	169	173	11.9999
GCAG	chr9:127623727-127623934(-)$1	207	41	45	11.9999
GCAG	chr3:38414041-38414340(+)$1	299	52	56	11.9999
GCAG	chr17:74085151-74085382(-)$1	231	51	55	11.9999
GCAG	chr16:22326389-22326632(+)$1	243	16	20	11.9999
GCAG	chr14:23945352-23945621(+)$1	269	155	159	11.9999
GCAG	chr5:179048137-179048374(-)$1	237	30	34	11.9999
GCAG	chr20:17608193-17608410(-)$1	217	7	11	11.9999
GCAG	chr5:55251811-55252160(-)$1	349	271	275	11.9999
GCAG	chr12:58112693-58112976(+)$1	283	278	282	11.9999
GCAG	chr7:138223338-138223574(+)$1	236	162	166	11.9999
GCAG	chr17:7125960-7126224(+)$1	264	68	72	11.9999
GCAG	chr6:33372587-33372880(+)$1	293	37	41	11.9999
GCAG	chr6:7583367-7583644(+)$1	277	61	65	11.9999
GCAG	chr1:6705827-6706113(-)$1	286	3	7	11.9999
GCAG	chr12:26810579-26810873(-)$1	294	64	68	11.9999
GCAG	chrX:70779023-70779289(+)$1	266	212	216	11.9999
GCAG	chr8:144920774-144921030(-)$1	256	183	187	11.9999
GCAG	chr20:25457343-25457624(-)$1	281	28	32	11.9999
GCAG	chr6:7310048-7310256(-)$1	208	2	6	11.9999
GCAG	chr2:242440811-242441078(-)$1	267	116	120	11.9999
GCAG	chr6:44217355-44217565(+)$1	210	52	56	11.9999
GCAG	chr11:85374892-85375167(-)$1	275	27	31	11.9999
GCAG	chr2:102448166-102448404(+)$1	238	175	179	11.9999
GCAG	chr17:75488652-75488878(+)$1	226	56	60	11.9999
GCAG	chr12:69650444-69650711(+)$1	267	164	168	11.9999
GCAG	chr5:14293058-14293332(+)$1	274	154	158	11.9999
GCAG	chr17:80050472-80050685(-)$1	213	28	32	11.9999
GCAG	chr2:27606753-27607041(-)$1	288	56	60	11.9999
GCAG	chr3:49052280-49052547(+)$1	267	76	80	11.9999
GCAG	chr17:15960761-15961040(-)$1	279	30	34	11.9999
GCAG	chr8:27467982-27468196(-)$1	214	8	12	11.9999
GCAG	chr9:139700882-139701116(+)$1	234	69	73	11.9999
GCAG	chr6:30638484-30638773(-)$1	289	40	44	11.9999
GCAG	chr20:31022349-31022660(+)$1	311	8	12	11.9999
GCAG	chr1:24989094-24989393(+)$1	299	125	129	11.9999
GCAG	chr8:117861083-117861299(-)$1	216	93	97	11.9999
GCAG	chr7:100283497-100283751(-)$1	254	45	49	11.9999
GCAG	chr22:36716742-36716974(-)$1	232	147	151	11.9999
GCAG	chr2:27605280-27605557(-)$1	277	225	229	11.9999
GCAG	chr8:145620789-145621056(-)$1	267	2	6	11.9999
GCAG	chr15:77223993-77224426(+)$1	433	48	52	11.9999
GCAG	chr11:70858062-70858302(-)$1	240	127	131	11.9999
GCAG	chr2:232321632-232321856(-)$1	224	17	21	11.9999
GCAG	chr14:24607460-24607697(+)$1	237	115	119	11.9999
GCAG	chr2:153527698-153527987(-)$1	289	96	100	11.9999
GCAG	chr5:73936096-73936379(-)$1	283	109	113	11.9999
GCAG	chr14:31576675-31576890(-)$1	215	43	47	11.9999
GCAG	chr7:72891616-72891932(-)$1	316	68	72	11.9999
GCAG	chr16:70696696-70696931(-)$1	235	75	79	11.9999
GCAG	chr17:80394527-80394819(+)$1	292	11	15	11.9999
GCAG	chr7:72891846-72892123(-)$1	277	259	263	11.9999
GCAG	chr3:37336412-37336669(+)$1	257	74	78	11.9999
GCAG	chr12:7025485-7025752(+)$1	267	10	14	11.9999
GCAG	chr19:18423312-18423613(-)$1	301	23	27	11.9999
GCAG	chr16:88723911-88724159(-)$1	248	64	68	11.9999
GCAG	chr14:39648279-39648530(+)$1	251	57	61	11.9999
GCAG	chr9:117062299-117062503(+)$1	204	46	50	11.9999
GCAG	chr19:54024888-54025188(+)$1	300	4	8	11.9999
GCAG	chr16:67976857-67977109(-)$1	252	226	230	11.9999
GCAG	chr20:43566694-43566931(+)$1	237	142	146	11.9999
GCAG	chr16:11857229-11857527(-)$1	298	233	237	11.9999
GCAG	chr10:102672679-102672959(+)$1	280	117	121	11.9999
GCAG	chr20:3183947-3184162(-)$1	215	8	12	11.9999
GCAG	chr20:60903443-60903657(-)$1	214	29	33	11.9999
GCAG	chr15:75654583-75654830(-)$1	247	38	42	11.9999
GCAG	chr17:65850134-65850397(+)$1	263	121	125	11.9999
GCAG	chr9:131345265-131345505(+)$1	240	231	235	11.9999
GCAG	chr11:592501-592740(+)$1	239	121	125	11.9999
GCAG	chr9:117026534-117026738(+)$1	204	23	27	11.9999
GCAG	chr1:21083576-21083849(-)$1	273	96	100	11.9999
GCAG	chr6:31636907-31637191(+)$1	284	78	82	11.9999
GCAG	chr16:75446345-75446670(-)$1	325	89	93	11.9999
GCAG	chr2:118766022-118766298(-)$1	276	127	131	11.9999
GCAG	chr6:144747371-144747611(+)$1	240	86	90	11.9999

#otherMatches

#Struct PSSM
::::	chr9:127998860-127999084(-)$1	224	160	164	11.9999
CAII	chr8:124361425-124361664(-)$1	239	24	28	11.9999
[ddd	chr1:169515584-169515848(-)$1	264	21	25	11.9999
oddd	chr20:62318958-62319210(+)$1	252	159	163	11.9999
iiii	chr14:23531612-23531830(-)$1	218	23	27	11.9999
bb]b	chr2:102476163-102476425(+)$1	262	57	61	11.9999
oooo	chr7:99935712-99935987(+)$1	275	214	218	11.9999
ffff	chr15:101971530-101971774(-)$1	244	154	158	11.9999
^^^^	chr4:184129035-184129315(+)$1	280	77	81	11.9999
eeee	chr16:66768012-66768278(-)$1	266	19	23	11.9999
eee[	chr20:62572056-62572303(-)$1	247	114	118	11.9999
bb[c	chr7:73019989-73020198(-)$1	209	146	150	11.9999
ee[d	chr22:50876961-50877208(+)$1	247	169	173	11.9999
"eee	chr9:127623727-127623934(-)$1	207	41	45	11.9999
e!!f	chr3:38414041-38414340(+)$1	299	52	56	11.9999
GGGG	chr17:74085151-74085382(-)$1	231	51	55	11.9999
e[ee	chr16:22326389-22326632(+)$1	243	16	20	11.9999
MMMM	chr14:23945352-23945621(+)$1	269	155	159	11.9999
ff""	chr5:179048137-179048374(-)$1	237	30	34	11.9999
{A{C	chr20:17608193-17608410(-)$1	217	7	11	11.9999
CCZZ	chr5:55251811-55252160(-)$1	349	271	275	11.9999
C}CC	chr12:58112693-58112976(+)$1	283	278	282	11.9999
cnnn	chr7:138223338-138223574(+)$1	236	162	166	11.9999
eee#	chr17:7125960-7126224(+)$1	264	68	72	11.9999
bccc	chr6:33372587-33372880(+)$1	293	37	41	11.9999
b!!d	chr6:7583367-7583644(+)$1	277	61	65	11.9999
CCEE	chr1:6705827-6706113(-)$1	286	3	7	11.9999
wwww	chr12:26810579-26810873(-)$1	294	64	68	11.9999
dddd	chrX:70779023-70779289(+)$1	266	212	216	11.9999
ddd[	chr8:144920774-144921030(-)$1	256	183	187	11.9999
:ddd	chr20:25457343-25457624(-)$1	281	28	32	11.9999
GGGG	chr6:7310048-7310256(-)$1	208	2	6	11.9999
HHHH	chr2:242440811-242441078(-)$1	267	116	120	11.9999
ccco	chr6:44217355-44217565(+)$1	210	52	56	11.9999
BBCC	chr11:85374892-85375167(-)$1	275	27	31	11.9999
eeee	chr2:102448166-102448404(+)$1	238	175	179	11.9999
b!!b	chr17:75488652-75488878(+)$1	226	56	60	11.9999
b]a]	chr12:69650444-69650711(+)$1	267	164	168	11.9999
dddd	chr5:14293058-14293332(+)$1	274	154	158	11.9999
CKKD	chr17:80050472-80050685(-)$1	213	28	32	11.9999
mmbb	chr2:27606753-27607041(-)$1	288	56	60	11.9999
::::	chr3:49052280-49052547(+)$1	267	76	80	11.9999
iiii	chr17:15960761-15961040(-)$1	279	30	34	11.9999
JJJJ	chr8:27467982-27468196(-)$1	214	8	12	11.9999
c[ff	chr9:139700882-139701116(+)$1	234	69	73	11.9999
]fff	chr6:30638484-30638773(-)$1	289	40	44	11.9999
eeee	chr20:31022349-31022660(+)$1	311	8	12	11.9999
ee[b	chr1:24989094-24989393(+)$1	299	125	129	11.9999
7777	chr8:117861083-117861299(-)$1	216	93	97	11.9999
rrrr	chr7:100283497-100283751(-)$1	254	45	49	11.9999
efff	chr22:36716742-36716974(-)$1	232	147	151	11.9999
[eee	chr2:27605280-27605557(-)$1	277	225	229	11.9999
EEEE	chr8:145620789-145621056(-)$1	267	2	6	11.9999
fFFF	chr15:77223993-77224426(+)$1	433	48	52	11.9999
::::	chr11:70858062-70858302(-)$1	240	127	131	11.9999
dd##	chr2:232321632-232321856(-)$1	224	17	21	11.9999
ccss	chr14:24607460-24607697(+)$1	237	115	119	11.9999
iiii	chr2:153527698-153527987(-)$1	289	96	100	11.9999
[eee	chr5:73936096-73936379(-)$1	283	109	113	11.9999
::CC	chr14:31576675-31576890(-)$1	215	43	47	11.9999
JJJJ	chr7:72891616-72891932(-)$1	316	68	72	11.9999
:::e	chr16:70696696-70696931(-)$1	235	75	79	11.9999
ccc[	chr17:80394527-80394819(+)$1	292	11	15	11.9999
4444	chr7:72891846-72892123(-)$1	277	259	263	11.9999
eeee	chr3:37336412-37336669(+)$1	257	74	78	11.9999
Fddd	chr12:7025485-7025752(+)$1	267	10	14	11.9999
DD{C	chr19:18423312-18423613(-)$1	301	23	27	11.9999
[eee	chr16:88723911-88724159(-)$1	248	64	68	11.9999
cc::	chr14:39648279-39648530(+)$1	251	57	61	11.9999
ffff	chr9:117062299-117062503(+)$1	204	46	50	11.9999
dggg	chr19:54024888-54025188(+)$1	300	4	8	11.9999
}CCC	chr16:67976857-67977109(-)$1	252	226	230	11.9999
qqqq	chr20:43566694-43566931(+)$1	237	142	146	11.9999
333h	chr16:11857229-11857527(-)$1	298	233	237	11.9999
eeee	chr10:102672679-102672959(+)$1	280	117	121	11.9999
BB{A	chr20:3183947-3184162(-)$1	215	8	12	11.9999
ee[d	chr20:60903443-60903657(-)$1	214	29	33	11.9999
ee[d	chr15:75654583-75654830(-)$1	247	38	42	11.9999
fffe	chr17:65850134-65850397(+)$1	263	121	125	11.9999
eEEE	chr9:131345265-131345505(+)$1	240	231	235	11.9999
!ccc	chr11:592501-592740(+)$1	239	121	125	11.9999
d[dd	chr9:117026534-117026738(+)$1	204	23	27	11.9999
dddd	chr1:21083576-21083849(-)$1	273	96	100	11.9999
eee]	chr6:31636907-31637191(+)$1	284	78	82	11.9999
]ggg	chr16:75446345-75446670(-)$1	325	89	93	11.9999
dd!!	chr2:118766022-118766298(-)$1	276	127	131	11.9999
ffff	chr6:144747371-144747611(+)$1	240	86	90	11.9999

#DB
....	chr9:127998860-127999084(-)$1	1	160	164	11.9999
((((	chr8:124361425-124361664(-)$1	1	24	28	11.9999
.(((	chr1:169515584-169515848(-)$1	1	21	25	11.9999
.)))	chr20:62318958-62319210(+)$1	1	159	163	11.9999
((((	chr14:23531612-23531830(-)$1	1	23	27	11.9999
)).)	chr2:102476163-102476425(+)$1	1	57	61	11.9999
....	chr7:99935712-99935987(+)$1	1	214	218	11.9999
))))	chr15:101971530-101971774(-)$1	1	154	158	11.9999
....	chr4:184129035-184129315(+)$1	1	77	81	11.9999
((((	chr16:66768012-66768278(-)$1	1	19	23	11.9999
(((.	chr20:62572056-62572303(-)$1	1	114	118	11.9999
((.(	chr7:73019989-73020198(-)$1	1	146	150	11.9999
((.(	chr22:50876961-50877208(+)$1	1	169	173	11.9999
.(((	chr9:127623727-127623934(-)$1	1	41	45	11.9999
(..(	chr3:38414041-38414340(+)$1	1	52	56	11.9999
((((	chr17:74085151-74085382(-)$1	1	51	55	11.9999
(.((	chr16:22326389-22326632(+)$1	1	16	20	11.9999
....	chr14:23945352-23945621(+)$1	1	155	159	11.9999
((..	chr5:179048137-179048374(-)$1	1	30	34	11.9999
.(.(	chr20:17608193-17608410(-)$1	1	7	11	11.9999
))..	chr5:55251811-55252160(-)$1	1	271	275	11.9999
).))	chr12:58112693-58112976(+)$1	1	278	282	11.9999
(...	chr7:138223338-138223574(+)$1	1	162	166	11.9999
(((.	chr17:7125960-7126224(+)$1	1	68	72	11.9999
((((	chr6:33372587-33372880(+)$1	1	37	41	11.9999
(..(	chr6:7583367-7583644(+)$1	1	61	65	11.9999
((((	chr1:6705827-6706113(-)$1	1	3	7	11.9999
....	chr12:26810579-26810873(-)$1	1	64	68	11.9999
((((	chrX:70779023-70779289(+)$1	1	212	216	11.9999
(((.	chr8:144920774-144921030(-)$1	1	183	187	11.9999
.(((	chr20:25457343-25457624(-)$1	1	28	32	11.9999
((((	chr6:7310048-7310256(-)$1	1	2	6	11.9999
((((	chr2:242440811-242441078(-)$1	1	116	120	11.9999
(((.	chr6:44217355-44217565(+)$1	1	52	56	11.9999
((((	chr11:85374892-85375167(-)$1	1	27	31	11.9999
))))	chr2:102448166-102448404(+)$1	1	175	179	11.9999
(..(	chr17:75488652-75488878(+)$1	1	56	60	11.9999
).).	chr12:69650444-69650711(+)$1	1	164	168	11.9999
((((	chr5:14293058-14293332(+)$1	1	154	158	11.9999
(..(	chr17:80050472-80050685(-)$1	1	28	32	11.9999
..))	chr2:27606753-27607041(-)$1	1	56	60	11.9999
....	chr3:49052280-49052547(+)$1	1	76	80	11.9999
((((	chr17:15960761-15961040(-)$1	1	30	34	11.9999
((((	chr8:27467982-27468196(-)$1	1	8	12	11.9999
(.((	chr9:139700882-139701116(+)$1	1	69	73	11.9999
.)))	chr6:30638484-30638773(-)$1	1	40	44	11.9999
((((	chr20:31022349-31022660(+)$1	1	8	12	11.9999
((.(	chr1:24989094-24989393(+)$1	1	125	129	11.9999
....	chr8:117861083-117861299(-)$1	1	93	97	11.9999
....	chr7:100283497-100283751(-)$1	1	45	49	11.9999
((((	chr22:36716742-36716974(-)$1	1	147	151	11.9999
.(((	chr2:27605280-27605557(-)$1	1	225	229	11.9999
((((	chr8:145620789-145621056(-)$1	1	2	6	11.9999
)(((	chr15:77223993-77224426(+)$1	1	48	52	11.9999
....	chr11:70858062-70858302(-)$1	1	127	131	11.9999
((..	chr2:232321632-232321856(-)$1	1	17	21	11.9999
((..	chr14:24607460-24607697(+)$1	1	115	119	11.9999
((((	chr2:153527698-153527987(-)$1	1	96	100	11.9999
.(((	chr5:73936096-73936379(-)$1	1	109	113	11.9999
..))	chr14:31576675-31576890(-)$1	1	43	47	11.9999
((((	chr7:72891616-72891932(-)$1	1	68	72	11.9999
...(	chr16:70696696-70696931(-)$1	1	75	79	11.9999
(((.	chr17:80394527-80394819(+)$1	1	11	15	11.9999
....	chr7:72891846-72892123(-)$1	1	259	263	11.9999
))))	chr3:37336412-37336669(+)$1	1	74	78	11.9999
((((	chr12:7025485-7025752(+)$1	1	10	14	11.9999
((.(	chr19:18423312-18423613(-)$1	1	23	27	11.9999
.(((	chr16:88723911-88724159(-)$1	1	64	68	11.9999
))..	chr14:39648279-39648530(+)$1	1	57	61	11.9999
))))	chr9:117062299-117062503(+)$1	1	46	50	11.9999
((((	chr19:54024888-54025188(+)$1	1	4	8	11.9999
.)))	chr16:67976857-67977109(-)$1	1	226	230	11.9999
....	chr20:43566694-43566931(+)$1	1	142	146	11.9999
...)	chr16:11857229-11857527(-)$1	1	233	237	11.9999
))))	chr10:102672679-102672959(+)$1	1	117	121	11.9999
((.(	chr20:3183947-3184162(-)$1	1	8	12	11.9999
((.(	chr20:60903443-60903657(-)$1	1	29	33	11.9999
((.(	chr15:75654583-75654830(-)$1	1	38	42	11.9999
((((	chr17:65850134-65850397(+)$1	1	121	125	11.9999
))))	chr9:131345265-131345505(+)$1	1	231	235	11.9999
.(((	chr11:592501-592740(+)$1	1	121	125	11.9999
(.((	chr9:117026534-117026738(+)$1	1	23	27	11.9999
((((	chr1:21083576-21083849(-)$1	1	96	100	11.9999
))).	chr6:31636907-31637191(+)$1	1	78	82	11.9999
.)))	chr16:75446345-75446670(-)$1	1	89	93	11.9999
((..	chr2:118766022-118766298(-)$1	1	127	131	11.9999
((((	chr6:144747371-144747611(+)$1	1	86	90	11.9999

#PSSM
G : 0.99	
C : 0.99	
A : 0.99	
G : 0.99	

#score	1043.9999999999998
#seq	87
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_UTR_m3_run1.nuc.txt

#NT
GCGGGCCCGGACGGGGCGG	chr17:74732712-74732968(-)$1	256	178	197	19.5000
UGAGGCCCAGCCCGGGCAG	chr9:140347388-140347614(-)$1	226	108	127	17.5000
CGCGCCCUGCCGUGGGCGA	chr17:79868892-79869126(-)$1	234	161	180	12.0000
UGAGGCCCAGCCCGGGCAG	chr9:140347364-140347588(-)$1	224	82	101	17.5000
gcgggcgcggggcgggcgc	chr14:35099049-35099318(-)$1	269	48	67	14.2500
UGAGGCCUGGCUUGGGCGC	chr6:74230519-74230781(-)$1	262	242	261	23.0000
ggggggcgggguggggcgg	chr9:116138863-116139110(-)$1	247	218	237	22.0000
UGGGGCCUGCAUGGGGUGG	chr9:139904666-139904966(-)$1	300	7	26	17.2499
ggggggugggguugggcgg	chr14:23791027-23791290(+)$1	263	88	107	16.2500
AUGGGGCAGCCUGGGGCAA	chr7:150774541-150774786(-)$1	245	83	102	14.7500
cggggcggggcuggggccg	chr2:128180682-128180991(+)$1	309	96	115	21.4999
GGCGGGGUGGCUGGGAACC	chr16:88724086-88724328(-)$1	242	103	122	11.5000
CGCGGCCGGGCUCUGUCCC	chr19:54024502-54024758(+)$1	256	235	254	12.7500
AGGGUCCUGCCCGGGGGGC	chr11:67810675-67810936(+)$1	261	84	103	14.7500
GGAGGUCGGGCAGGGCCUC	chr20:57226350-57226602(+)$1	252	116	135	14.5000
CUGGGGCAGGCUGGGGAGC	chr17:77078044-77078299(+)$1	255	5	24	17.7499
GGUGGCCUCGCCGGAGCUA	chr16:88718714-88718961(-)$1	247	65	84	12.5000
CUGGGAAAGGCUGCGGCGC	chr4:39460321-39460585(-)$1	264	127	146	12.2500
GGGGGCCCUCCUGGGGGUC	chr1:156351927-156352197(+)$1	270	5	24	16.5000

#otherMatches

#Struct PSSM
d:FFFFFF::iiiiiiiii	chr9:140347334-140347564(-)$1	230	58	77	17.5000
dd22ccceeeee:a[bbmm	chr17:74732712-74732968(-)$1	256	178	197	19.5000
ee::ddddnnnnndddd::	chr9:140347388-140347614(-)$1	226	108	127	17.5000
cc]eeeee]bbhhhhhhhh	chr17:79868892-79869126(-)$1	234	161	180	12.0000
a]bbaeeeee]eeeee666	chr9:140347364-140347588(-)$1	224	82	101	17.5000
JJJJJJJJJJ{CCCggggg	chr14:35099049-35099318(-)$1	269	48	67	14.2500
8ffffff]ffffffDDDDB	chr6:74230519-74230781(-)$1	262	242	261	23.0000
dddddddCCC}HHHHHHHH	chr9:116138863-116139110(-)$1	247	218	237	22.0000
c"""ddddnnnnndddd33	chr9:139904666-139904966(-)$1	300	7	26	17.2499
BBB{A{A{IIIIIIIII{B	chr14:23791027-23791290(+)$1	263	88	107	16.2500
ddddbb666666eeeee22	chr7:150774541-150774786(-)$1	245	83	102	14.7500
C{EEEEE:::cccdddd[c	chr2:128180682-128180991(+)$1	309	96	115	21.4999
ii]eeeeedddddddd:FF	chr16:88724086-88724328(-)$1	242	103	122	11.5000
DDDD}EEEEE:::::::::	chr19:54024502-54024758(+)$1	256	235	254	12.7500
ggmmmmgggggggHHHHHH	chr11:67810675-67810936(+)$1	261	84	103	14.7500
cccdddd:JJJJJJJJJJ:	chr20:57226350-57226602(+)$1	252	116	135	14.5000
:DDDDFFFFFF{CCCeeee	chr17:77078044-77078299(+)$1	255	5	24	17.7499
cccbbccc]bb]bbbb]dd	chr16:88718714-88718961(-)$1	247	65	84	12.5000
!!dddd[dddd[a[dddd[	chr4:39460321-39460585(-)$1	264	127	146	12.2500
iiiiiiiiimmmmiiiiii	chr1:156351927-156352197(+)$1	270	5	24	16.5000

#DB
).))))))..(((((((((	chr9:140347334-140347564(-)$1	1	58	77	17.5000
))..)))))))).(.((..	chr17:74732712-74732968(-)$1	1	178	197	19.5000
))..((((.....))))..	chr9:140347388-140347614(-)$1	1	108	127	17.5000
)).))))).))))))))))	chr17:79868892-79869126(-)$1	1	161	180	12.0000
).)))))))).)))))...	chr9:140347364-140347588(-)$1	1	82	101	17.5000
((((((((((.((((((((	chr14:35099049-35099318(-)$1	1	48	67	14.2500
.)))))).)))))))))))	chr6:74230519-74230781(-)$1	1	242	261	23.0000
)))))))))).))))))))	chr9:116138863-116139110(-)$1	1	218	237	22.0000
(...((((.....))))..	chr9:139904666-139904966(-)$1	1	7	26	17.2499
(((.(.(.(((((((((.(	chr14:23791027-23791290(+)$1	1	88	107	16.2500
))))))......)))))..	chr7:150774541-150774786(-)$1	1	83	102	14.7500
(.(((((...(((((((.(	chr2:128180682-128180991(+)$1	1	96	115	21.4999
)).))))))))))))).((	chr16:88724086-88724328(-)$1	1	103	122	11.5000
)))).))))).........	chr19:54024502-54024758(+)$1	1	235	254	12.7500
((....)))))))((((((	chr11:67810675-67810936(+)$1	1	84	103	14.7500
))))))).)))))))))).	chr20:57226350-57226602(+)$1	1	116	135	14.5000
.((((((((((.(((((((	chr17:77078044-77078299(+)$1	1	5	24	17.7499
)))))))).)).)))).))	chr16:88718714-88718961(-)$1	1	65	84	12.5000
..((((.((((.(.((((.	chr4:39460321-39460585(-)$1	1	127	146	12.2500
(((((((((....))))))	chr1:156351927-156352197(+)$1	1	5	24	16.5000

#PSSM
U : 0.25	G : 0.25	C : 0.20	g : 0.15	A : 0.10	c : 0.05	
G : 0.60	g : 0.15	U : 0.15	C : 0.05	c : 0.05	
G : 0.35	A : 0.25	g : 0.20	C : 0.15	U : 0.05	
G : 0.80	g : 0.20	
G : 0.70	g : 0.20	C : 0.05	U : 0.05	
C : 0.54	G : 0.15	c : 0.10	g : 0.10	U : 0.05	A : 0.05	
C : 0.70	g : 0.10	c : 0.05	u : 0.05	G : 0.05	A : 0.05	
U : 0.30	C : 0.25	g : 0.15	A : 0.15	G : 0.10	c : 0.05	
G : 0.54	g : 0.20	A : 0.15	C : 0.05	U : 0.05	
G : 0.54	C : 0.25	g : 0.20	
C : 0.70	g : 0.15	A : 0.10	c : 0.05	
U : 0.39	C : 0.30	u : 0.15	G : 0.05	g : 0.05	A : 0.05	
G : 0.49	C : 0.20	U : 0.10	g : 0.10	c : 0.05	u : 0.05	
G : 0.70	g : 0.20	U : 0.05	C : 0.05	
G : 0.75	g : 0.20	A : 0.05	
G : 0.65	g : 0.20	A : 0.05	U : 0.05	C : 0.05	
C : 0.54	c : 0.20	A : 0.10	G : 0.10	U : 0.05	
G : 0.35	A : 0.20	g : 0.15	U : 0.15	C : 0.10	c : 0.05	
C : 0.39	G : 0.25	A : 0.15	g : 0.15	c : 0.05	

#score	325.5
#seq	20
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_CDS_m3_run2.nuc.txt

#NT
GGAGG	chr16:420116-420395(-)$1	279	227	232	15.0000
GGAGG	chr6:32157427-32157684(-)$1	257	127	132	15.0000
GGAGG	chr7:128828952-128829223(+)$1	271	185	190	15.0000
GGAGG	chr6:33179571-33179822(+)$1	251	8	13	15.0000
GGAGG	chr9:5832698-5832979(-)$1	281	44	49	15.0000
GGAGG	chr5:137688326-137688629(+)$1	303	69	74	15.0000
GGAGG	chr19:56599444-56599693(-)$1	249	121	126	15.0000
GGAGg	chr19:6739610-6739902(+)$1	292	92	97	15.0000
GGAGG	chrX:48858485-48858754(-)$1	269	60	65	15.0000
GGAGG	chr1:27320166-27320408(+)$1	242	152	157	15.0000
GGAGG	chr16:448088-448333(+)$1	245	49	54	15.0000
GGAGG	chr16:69166299-69166541(-)$1	242	96	101	15.0000
GGAGG	chr17:46986073-46986345(-)$1	272	41	46	15.0000
ggagg	chr17:7232429-7232710(-)$1	281	115	120	15.0000
ggagg	chr1:110527478-110527783(+)$1	305	86	91	15.0000
GGAGG	chr15:67391100-67391391(+)$1	291	24	29	15.0000
ggagg	chr6:48036283-48036526(-)$1	243	50	55	15.0000
ggagg	chr7:128864763-128865062(+)$1	299	36	41	15.0000
GGAGG	chr16:4744319-4744559(+)$1	240	77	82	15.0000
GGAGG	chr15:41099807-41100101(+)$1	294	255	260	15.0000
GGAGG	chr10:91404792-91405084(-)$1	292	91	96	15.0000
GGAGG	chr11:2156538-2156766(-)$1	228	181	186	15.0000
ggagg	chr5:95297256-95297525(-)$1	269	50	55	15.0000
GGAGG	chr11:2154068-2154326(-)$1	258	16	21	15.0000
ggagg	chr17:7232365-7232629(-)$1	264	34	39	15.0000
GGAGG	chr4:1018980-1019226(+)$1	246	115	120	15.0000
GGAGG	chr2:11484147-11484458(-)$1	311	285	290	15.0000
GGAGG	chr12:132414124-132414388(+)$1	264	8	13	15.0000
GGAGG	chr10:101379902-101380206(-)$1	304	1	6	15.0000
GGAGG	chr20:43029878-43030133(+)$1	255	46	51	15.0000
GGAGG	chr16:89894829-89895118(+)$1	289	108	113	15.0000
GGAGG	chr19:10222197-10222499(+)$1	302	24	29	15.0000
ggagg	chr2:54197719-54197994(-)$1	275	29	34	15.0000
ggagg	chr17:55333990-55334264(+)$1	274	1	6	15.0000
GGAGG	chr2:231902250-231902550(+)$1	300	44	49	15.0000
GGAGG	chr1:156347907-156348179(+)$1	272	36	41	15.0000
GGAGG	chr1:3703445-3703724(-)$1	279	15	20	15.0000
GGAGG	chr10:104503647-104503958(+)$1	311	3	8	15.0000
GGAGG	chr6:32157484-32157764(-)$1	280	28	33	15.0000
GGAGG	chr22:20862357-20862671(+)$1	314	92	97	15.0000
ggagg	chr10:103454217-103454465(-)$1	248	88	93	15.0000
GGAGG	chr12:56552143-56552507(+)$1	364	130	135	15.0000
ggagg	chr4:39699790-39700053(+)$1	263	67	72	15.0000
ggagg	chr6:41747997-41748271(+)$1	274	20	25	15.0000
GGAGG	chr14:24911341-24911620(-)$1	279	95	100	15.0000
ggagg	chr17:34171536-34171905(+)$1	369	168	173	15.0000
GGAGG	chr6:33179049-33179291(+)$1	242	42	47	15.0000
GGAGG	chr17:79913316-79913586(-)$1	270	136	141	15.0000
GGAGG	chr7:154794531-154794792(-)$1	261	194	199	15.0000
ggagg	chr5:180651177-180651426(+)$1	249	4	9	15.0000
GGAGG	chr16:29819095-29819399(+)$1	304	90	95	15.0000
GGAGG	chr11:2156520-2156738(-)$1	218	153	158	15.0000
GGAGG	chr14:24901240-24901478(+)$1	238	1	6	15.0000
GGAGG	chr19:7679895-7680180(+)$1	285	104	109	15.0000
GGAGG	chr17:80218787-80219042(-)$1	255	113	118	15.0000
GGAGG	chr12:19592478-19592777(+)$1	299	76	81	15.0000
GGAGG	chr12:2113426-2113699(-)$1	273	89	94	15.0000
GGAGG	chr7:100136904-100137149(+)$1	245	0	5	15.0000
ggagg	chr20:3765580-3765910(-)$1	330	3	8	15.0000
GGAGG	chr1:155294924-155295226(+)$1	302	61	66	15.0000
GGAGG	chr7:100136789-100137104(+)$1	315	29	34	15.0000
GGAGG	chr16:67976996-67977317(-)$1	321	63	68	15.0000
GGAGG	chr1:155658046-155658325(-)$1	279	115	120	15.0000
GGAGG	chr1:36788407-36788686(+)$1	279	77	82	15.0000
GGAGG	chr14:24901278-24901568(+)$1	290	68	73	15.0000
GGAGG	chr17:79225909-79226168(-)$1	259	7	12	15.0000
GGAGG	chr17:2203226-2203509(-)$1	283	26	31	15.0000
GGAGG	chr22:20110059-20110326(+)$1	267	124	129	15.0000
GGAGG	chr3:45730826-45731084(+)$1	258	114	119	15.0000
ggagg	chr12:19593016-19593339(+)$1	323	81	86	15.0000
ggagg	chr15:90172464-90172739(+)$1	275	55	60	15.0000
GGAGG	chr22:51153087-51153421(+)$1	334	142	147	15.0000
GGAGG	chr7:44575848-44576194(-)$1	346	7	12	15.0000
GGAGG	chr2:27255763-27256135(+)$1	372	101	106	15.0000
GGAGG	chr19:17450229-17450548(+)$1	319	128	133	15.0000
GGAGG	chr21:47565644-47565888(-)$1	244	93	98	15.0000

#otherMatches

#Struct PSSM
hhhhh	chr9:139756692-139756951(-)$1	259	105	110	15.0000
CZZZC	chr16:420116-420395(-)$1	279	227	232	15.0000
iiiii	chr6:32157427-32157684(-)$1	257	127	132	15.0000
dddBB	chr7:128828952-128829223(+)$1	271	185	190	15.0000
mmmmb	chr6:33179571-33179822(+)$1	251	8	13	15.0000
fffff	chr9:5832698-5832979(-)$1	281	44	49	15.0000
:::HH	chr5:137688326-137688629(+)$1	303	69	74	15.0000
nnna]	chr19:56599444-56599693(-)$1	249	121	126	15.0000
DD{CC	chr19:6739610-6739902(+)$1	292	92	97	15.0000
a[fff	chrX:48858485-48858754(-)$1	269	60	65	15.0000
ff[a[	chr1:27320166-27320408(+)$1	242	152	157	15.0000
EEEEE	chr16:448088-448333(+)$1	245	49	54	15.0000
]bbii	chr16:69166299-69166541(-)$1	242	96	101	15.0000
ee[bb	chr17:46986073-46986345(-)$1	272	41	46	15.0000
!a[hh	chr17:7232429-7232710(-)$1	281	115	120	15.0000
2dddd	chr1:110527478-110527783(+)$1	305	86	91	15.0000
GGGGF	chr15:67391100-67391391(+)$1	291	24	29	15.0000
ooooo	chr6:48036283-48036526(-)$1	243	50	55	15.0000
OOOOB	chr7:128864763-128865062(+)$1	299	36	41	15.0000
d22ee	chr16:4744319-4744559(+)$1	240	77	82	15.0000
eeeee	chr15:41099807-41100101(+)$1	294	255	260	15.0000
BBKKC	chr10:91404792-91405084(-)$1	292	91	96	15.0000
ffhhh	chr11:2156538-2156766(-)$1	228	181	186	15.0000
"""cc	chr5:95297256-95297525(-)$1	269	50	55	15.0000
GGGGG	chr11:2154068-2154326(-)$1	258	16	21	15.0000
444gg	chr17:7232365-7232629(-)$1	264	34	39	15.0000
ceeee	chr4:1018980-1019226(+)$1	246	115	120	15.0000
dd]cc	chr2:11484147-11484458(-)$1	311	285	290	15.0000
[bb[b	chr12:132414124-132414388(+)$1	264	8	13	15.0000
:BBKK	chr10:101379902-101380206(-)$1	304	1	6	15.0000
iiiii	chr20:43029878-43030133(+)$1	255	46	51	15.0000
ee[a[	chr16:89894829-89895118(+)$1	289	108	113	15.0000
nnnee	chr19:10222197-10222499(+)$1	302	24	29	15.0000
LLLEE	chr2:54197719-54197994(-)$1	275	29	34	15.0000
BB{BB	chr17:55333990-55334264(+)$1	274	1	6	15.0000
==[a[	chr2:231902250-231902550(+)$1	300	44	49	15.0000
IIIII	chr1:156347907-156348179(+)$1	272	36	41	15.0000
LLLDD	chr1:3703445-3703724(-)$1	279	15	20	15.0000
[bb[a	chr10:104503647-104503958(+)$1	311	3	8	15.0000
BKKBB	chr6:32157484-32157764(-)$1	280	28	33	15.0000
]a::B	chr22:20862357-20862671(+)$1	314	92	97	15.0000
EEEE{	chr10:103454217-103454465(-)$1	248	88	93	15.0000
BB{DD	chr12:56552143-56552507(+)$1	364	130	135	15.0000
rrrrr	chr4:39699790-39700053(+)$1	263	67	72	15.0000
A{CCC	chr6:41747997-41748271(+)$1	274	20	25	15.0000
f:eee	chr14:24911341-24911620(-)$1	279	95	100	15.0000
bb"""	chr17:34171536-34171905(+)$1	369	168	173	15.0000
ooood	chr6:33179049-33179291(+)$1	242	42	47	15.0000
bmmmm	chr17:79913316-79913586(-)$1	270	136	141	15.0000
hhh::	chr7:154794531-154794792(-)$1	261	194	199	15.0000
:::::	chr5:180651177-180651426(+)$1	249	4	9	15.0000
e22bb	chr16:29819095-29819399(+)$1	304	90	95	15.0000
cc!!d	chr11:2156520-2156738(-)$1	218	153	158	15.0000
FFFFF	chr14:24901240-24901478(+)$1	238	1	6	15.0000
HYYDD	chr19:7679895-7680180(+)$1	285	104	109	15.0000
ggggc	chr17:80218787-80219042(-)$1	255	113	118	15.0000
cc[gg	chr12:19592478-19592777(+)$1	299	76	81	15.0000
b]a]b	chr12:2113426-2113699(-)$1	273	89	94	15.0000
:::DD	chr7:100136904-100137149(+)$1	245	0	5	15.0000
:::::	chr20:3765580-3765910(-)$1	330	3	8	15.0000
EEEEE	chr1:155294924-155295226(+)$1	302	61	66	15.0000
cc:::	chr7:100136789-100137104(+)$1	315	29	34	15.0000
CC{BB	chr16:67976996-67977317(-)$1	321	63	68	15.0000
ggggg	chr1:155658046-155658325(-)$1	279	115	120	15.0000
dd[dd	chr1:36788407-36788686(+)$1	279	77	82	15.0000
e####	chr14:24901278-24901568(+)$1	290	68	73	15.0000
:::::	chr17:79225909-79226168(-)$1	259	7	12	15.0000
LA{BB	chr17:2203226-2203509(-)$1	283	26	31	15.0000
cc:::	chr22:20110059-20110326(+)$1	267	124	129	15.0000
::ddd	chr3:45730826-45731084(+)$1	258	114	119	15.0000
ccmmm	chr12:19593016-19593339(+)$1	323	81	86	15.0000
E{BBE	chr15:90172464-90172739(+)$1	275	55	60	15.0000
ggBB{	chr22:51153087-51153421(+)$1	334	142	147	15.0000
qqqqq	chr7:44575848-44576194(-)$1	346	7	12	15.0000
CCKKB	chr2:27255763-27256135(+)$1	372	101	106	15.0000
eeEEE	chr19:17450229-17450548(+)$1	319	128	133	15.0000
#bb[a	chr21:47565644-47565888(-)$1	244	93	98	15.0000

#DB
)))))	chr9:139756692-139756951(-)$1	1	105	110	15.0000
)...)	chr16:420116-420395(-)$1	1	227	232	15.0000
)))))	chr6:32157427-32157684(-)$1	1	127	132	15.0000
)))))	chr7:128828952-128829223(+)$1	1	185	190	15.0000
....)	chr6:33179571-33179822(+)$1	1	8	13	15.0000
(((((	chr9:5832698-5832979(-)$1	1	44	49	15.0000
...((	chr5:137688326-137688629(+)$1	1	69	74	15.0000
...).	chr19:56599444-56599693(-)$1	1	121	126	15.0000
((.((	chr19:6739610-6739902(+)$1	1	92	97	15.0000
(.(((	chrX:48858485-48858754(-)$1	1	60	65	15.0000
((.(.	chr1:27320166-27320408(+)$1	1	152	157	15.0000
(((((	chr16:448088-448333(+)$1	1	49	54	15.0000
.))((	chr16:69166299-69166541(-)$1	1	96	101	15.0000
((.((	chr17:46986073-46986345(-)$1	1	41	46	15.0000
.(.((	chr17:7232429-7232710(-)$1	1	115	120	15.0000
.))))	chr1:110527478-110527783(+)$1	1	86	91	15.0000
(((((	chr15:67391100-67391391(+)$1	1	24	29	15.0000
.....	chr6:48036283-48036526(-)$1	1	50	55	15.0000
....(	chr7:128864763-128865062(+)$1	1	36	41	15.0000
)..))	chr16:4744319-4744559(+)$1	1	77	82	15.0000
(((((	chr15:41099807-41100101(+)$1	1	255	260	15.0000
((..(	chr10:91404792-91405084(-)$1	1	91	96	15.0000
))(((	chr11:2156538-2156766(-)$1	1	181	186	15.0000
...((	chr5:95297256-95297525(-)$1	1	50	55	15.0000
(((((	chr11:2154068-2154326(-)$1	1	16	21	15.0000
...))	chr17:7232365-7232629(-)$1	1	34	39	15.0000
)))))	chr4:1018980-1019226(+)$1	1	115	120	15.0000
)).))	chr2:11484147-11484458(-)$1	1	285	290	15.0000
.((.(	chr12:132414124-132414388(+)$1	1	8	13	15.0000
.((..	chr10:101379902-101380206(-)$1	1	1	6	15.0000
)))))	chr20:43029878-43030133(+)$1	1	46	51	15.0000
((.(.	chr16:89894829-89895118(+)$1	1	108	113	15.0000
...))	chr19:10222197-10222499(+)$1	1	24	29	15.0000
...((	chr2:54197719-54197994(-)$1	1	29	34	15.0000
((.((	chr17:55333990-55334264(+)$1	1	1	6	15.0000
((.(.	chr2:231902250-231902550(+)$1	1	44	49	15.0000
(((((	chr1:156347907-156348179(+)$1	1	36	41	15.0000
...((	chr1:3703445-3703724(-)$1	1	15	20	15.0000
.((.(	chr10:104503647-104503958(+)$1	1	3	8	15.0000
(..((	chr6:32157484-32157764(-)$1	1	28	33	15.0000
.)..(	chr22:20862357-20862671(+)$1	1	92	97	15.0000
((((.	chr10:103454217-103454465(-)$1	1	88	93	15.0000
((.((	chr12:56552143-56552507(+)$1	1	130	135	15.0000
.....	chr4:39699790-39700053(+)$1	1	67	72	15.0000
(.(((	chr6:41747997-41748271(+)$1	1	20	25	15.0000
).(((	chr14:24911341-24911620(-)$1	1	95	100	15.0000
((...	chr17:34171536-34171905(+)$1	1	168	173	15.0000
....)	chr6:33179049-33179291(+)$1	1	42	47	15.0000
(....	chr17:79913316-79913586(-)$1	1	136	141	15.0000
)))..	chr7:154794531-154794792(-)$1	1	194	199	15.0000
.....	chr5:180651177-180651426(+)$1	1	4	9	15.0000
)..))	chr16:29819095-29819399(+)$1	1	90	95	15.0000
((..(	chr11:2156520-2156738(-)$1	1	153	158	15.0000
(((((	chr14:24901240-24901478(+)$1	1	1	6	15.0000
)..))	chr19:7679895-7680180(+)$1	1	104	109	15.0000
)))))	chr17:80218787-80219042(-)$1	1	113	118	15.0000
((.((	chr12:19592478-19592777(+)$1	1	76	81	15.0000
).).)	chr12:2113426-2113699(-)$1	1	89	94	15.0000
...((	chr7:100136904-100137149(+)$1	1	0	5	15.0000
.....	chr20:3765580-3765910(-)$1	1	3	8	15.0000
(((((	chr1:155294924-155295226(+)$1	1	61	66	15.0000
))...	chr7:100136789-100137104(+)$1	1	29	34	15.0000
((.((	chr16:67976996-67977317(-)$1	1	63	68	15.0000
(((((	chr1:155658046-155658325(-)$1	1	115	120	15.0000
((.((	chr1:36788407-36788686(+)$1	1	77	82	15.0000
(....	chr14:24901278-24901568(+)$1	1	68	73	15.0000
.....	chr17:79225909-79226168(-)$1	1	7	12	15.0000
.(.((	chr17:2203226-2203509(-)$1	1	26	31	15.0000
))...	chr22:20110059-20110326(+)$1	1	124	129	15.0000
..(((	chr3:45730826-45731084(+)$1	1	114	119	15.0000
((...	chr12:19593016-19593339(+)$1	1	81	86	15.0000
(.(((	chr15:90172464-90172739(+)$1	1	55	60	15.0000
))((.	chr22:51153087-51153421(+)$1	1	142	147	15.0000
.....	chr7:44575848-44576194(-)$1	1	7	12	15.0000
((..(	chr2:27255763-27256135(+)$1	1	101	106	15.0000
))(((	chr19:17450229-17450548(+)$1	1	128	133	15.0000
.((.(	chr21:47565644-47565888(-)$1	1	93	98	15.0000

#PSSM
G : 0.79	g : 0.20	
G : 0.79	g : 0.20	
A : 0.79	a : 0.20	
G : 0.79	g : 0.20	
G : 0.77	g : 0.22	

#score	1155.0000000000002
#seq	77
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_transcript_m1_run1.nuc.txt

#NT
UUAUUCUUUU	chr17:56168019-56168259(+)$1	240	197	207	16.7592
UGUUUUUUUU	chrX:152481641-152481902(-)$1	261	23	33	21.0185
UUUAUAUUUU	chr11:5290583-5290796(-)$1	213	147	157	17.4074
UUUUUUUUUU	chr22:32353309-32353606(+)$1	297	82	92	24.4444
UUUUUCUUUU	chr19:11172478-11172793(+)$1	315	278	288	21.1111
uuuuuuuuuu	chr5:179041637-179041883(-)$1	246	76	86	24.4444
UGUUUUAUUU	chr6:8079815-8080107(-)$1	292	132	142	17.4999
UUUUUUUUGU	chr17:62495703-62495950(-)$1	247	95	105	19.9999
uuuuuuuuuu	chr11:70281346-70281585(+)$1	239	13	23	24.4444
UUUUUUGUUU	chrX:70518218-70518456(+)$1	238	85	95	20.6481
UUUUUUAUUU	chr12:57057470-57057725(-)$1	255	225	235	20.9259
UUUUUAUUUU	chr16:21994357-21994651(+)$1	294	8	18	21.2962
uuuuuuuuuu	chr14:23795198-23795439(+)$1	241	6	16	24.4444
UUUGUUUUUU	chr19:1258626-1258868(+)$1	242	213	223	20.5555
UUUCGUUUUU	chr1:203823039-203823285(+)$1	246	9	19	16.3888
UUUUUUUUUU	chr7:127231549-127231838(+)$1	289	86	96	24.4444
uuuuuuuuuu	chr16:31202619-31202847(+)$1	228	79	89	24.4444
UUUUAUUUUU	chr8:101734003-101734236(-)$1	233	76	86	20.2777
UGUAUUUUUU	chr1:46083631-46083944(+)$1	313	228	238	17.1296
UUGUUUCUUU	chr16:31202250-31202500(+)$1	250	15	25	16.3888
UCUUUUUUUU	chr11:5269426-5269686(-)$1	260	202	212	20.5555
UAUCUUUUUU	chr15:78575607-78575964(-)$1	357	80	90	16.9444
UUUUUGUUUU	chr1:231701665-231701906(+)$1	241	87	97	21.1111
UUUUUUUUUU	chrX:70520790-70521051(+)$1	261	114	124	24.4444
UUUUUUGUUU	chr1:150594859-150595146(-)$1	287	26	36	20.6481
UUUUAUUUUU	chr8:101733999-101734203(-)$1	204	43	53	20.2777
UUUUAUUUUU	chr17:56168311-56168573(+)$1	262	90	100	20.2777
UUUUUUUUUU	chr6:75949916-75950174(-)$1	258	49	59	24.4444
UUUUUAUUUU	chr6:49572888-49573177(-)$1	289	127	137	21.2962
AUUUUUUUUU	chr14:92583741-92584052(-)$1	311	49	59	19.6296
UUUAUUAUUU	chr11:118279747-118279997(+)$1	250	97	107	17.0370
UUGUUUAUUU	chr2:28974738-28974995(+)$1	257	31	41	16.8518
UGUUUAUUUU	chr9:131018059-131018319(-)$1	260	168	178	17.8703
UUUUUAUUUU	chr7:26231388-26231634(-)$1	246	187	197	21.2962
uuuguuuuuu	chr12:72003723-72003974(-)$1	251	60	70	20.5555
UUUCUGUUUU	chr7:96318042-96318336(-)$1	294	41	51	17.2222
UACUUUUUUU	chr14:23495146-23495414(-)$1	268	229	239	16.4814
uuuuuuuuuu	chr19:893454-893691(+)$1	237	131	141	24.4444
UUUUGAUUUU	chr1:28865231-28865483(+)$1	252	186	196	17.1296
UGUUUUAUUU	chr3:179342020-179342310(+)$1	290	61	71	17.4999
UUUUUUUUGU	chr15:44063588-44063836(+)$1	248	102	112	19.9999
UUUUUUUUGU	chr15:44063537-44063788(+)$1	251	153	163	19.9999
UAUGUUUUUU	chr17:38153991-38154297(+)$1	306	165	175	16.9444
uuuuuuuuuu	chr18:9124770-9125049(+)$1	279	29	39	24.4444
UUUUUUUUUU	chr3:128338719-128338963(-)$1	244	88	98	24.4444
uuuuuuuuuu	chr7:100278975-100279225(-)$1	250	87	97	24.4444
UGGUUUUUUU	chr4:174252888-174253172(-)$1	284	187	197	16.9444
uuuuuuuuuu	chr7:148700585-148700858(-)$1	273	77	87	24.4444
UUUUGGUUUU	chr16:2821194-2821489(+)$1	295	150	160	16.9444
UUUUUCAUUU	chr2:55200068-55200349(-)$1	281	1	11	17.5925
UUUUUGUUUU	chr1:226548788-226549030(-)$1	242	85	95	21.1111
UUUUUUUUUU	chr7:54819920-54820218(-)$1	298	214	224	24.4444
UUGUUUGUUU	chr2:55199261-55199509(-)$1	248	29	39	16.5740

#otherMatches

#Struct PSSM
d[ffffffee	chr11:18425225-18425460(+)$1	235	3	13	17.4999
ddd]ffffff	chr17:56168019-56168259(+)$1	240	197	207	16.7592
QQQQQQHHHH	chrX:152481641-152481902(-)$1	261	23	33	21.0185
gggg[cccqq	chr11:5290583-5290796(-)$1	213	147	157	17.4074
hvvvvvvvvv	chr22:32353309-32353606(+)$1	297	82	92	24.4444
==========	chr19:11172478-11172793(+)$1	315	278	288	21.1111
::::::::::	chr5:179041637-179041883(-)$1	246	76	86	24.4444
dddeeeee22	chr6:8079815-8080107(-)$1	292	132	142	17.4999
:::ggggggg	chr17:62495703-62495950(-)$1	247	95	105	19.9999
::::::::::	chr11:70281346-70281585(+)$1	239	13	23	24.4444
==========	chrX:70518218-70518456(+)$1	238	85	95	20.6481
hiiiiiiiii	chr12:57057470-57057725(-)$1	255	225	235	20.9259
OOOOOGGGGG	chr16:21994357-21994651(+)$1	294	8	18	21.2962
::::::::::	chr14:23795198-23795439(+)$1	241	6	16	24.4444
}CCC::::::	chr19:1258626-1258868(+)$1	242	213	223	20.5555
:::::::iii	chr1:203823039-203823285(+)$1	246	9	19	16.3888
==========	chr7:127231549-127231838(+)$1	289	86	96	24.4444
::::::::::	chr16:31202619-31202847(+)$1	228	79	89	24.4444
4444gggggg	chr8:101734003-101734236(-)$1	233	76	86	20.2777
eeeee:ffff	chr1:46083631-46083944(+)$1	313	228	238	17.1296
GGGG======	chr16:31202250-31202500(+)$1	250	15	25	16.3888
::::::::::	chr11:5269426-5269686(-)$1	260	202	212	20.5555
]ffffff]cc	chr15:78575607-78575964(-)$1	357	80	90	16.9444
rrrrrrrrrf	chr1:231701665-231701906(+)$1	241	87	97	21.1111
d:::::::::	chrX:70520790-70521051(+)$1	261	114	124	24.4444
hhhhh!!===	chr1:150594859-150595146(-)$1	287	26	36	20.6481
4444gggggg	chr8:101733999-101734203(-)$1	204	43	53	20.2777
gggeeeeeoo	chr17:56168311-56168573(+)$1	262	90	100	20.2777
dd"""cccqq	chr6:75949916-75950174(-)$1	258	49	59	24.4444
c!!ffffffl	chr6:49572888-49573177(-)$1	289	127	137	21.2962
4iiiiiiiii	chr14:92583741-92584052(-)$1	311	49	59	19.6296
dddd[bbrrr	chr11:118279747-118279997(+)$1	250	97	107	17.0370
GGGGGMMMMC	chr2:28974738-28974995(+)$1	257	31	41	16.8518
ffff333===	chr9:131018059-131018319(-)$1	260	168	178	17.8703
hhhhhh[ccc	chr7:26231388-26231634(-)$1	246	187	197	21.2962
JJJJJJJJJJ	chr12:72003723-72003974(-)$1	251	60	70	20.5555
hhh:::::::	chr7:96318042-96318336(-)$1	294	41	51	17.2222
!!cccooooo	chr14:23495146-23495414(-)$1	268	229	239	16.4814
eeee::::::	chr19:893454-893691(+)$1	237	131	141	24.4444
gggg333ggg	chr1:28865231-28865483(+)$1	252	186	196	17.1296
[bbppppppp	chr3:179342020-179342310(+)$1	290	61	71	17.4999
wwwwwwwwww	chr15:44063588-44063836(+)$1	248	102	112	19.9999
ddd"""dddd	chr15:44063537-44063788(+)$1	251	153	163	19.9999
""dddd[ggg	chr17:38153991-38154297(+)$1	306	165	175	16.9444
::::::::::	chr18:9124770-9125049(+)$1	279	29	39	24.4444
^^^^^^^^^^	chr3:128338719-128338963(-)$1	244	88	98	24.4444
hhhhhhhhzz	chr7:100278975-100279225(-)$1	250	87	97	24.4444
=bb666666c	chr4:174252888-174253172(-)$1	284	187	197	16.9444
::::::::::	chr7:148700585-148700858(-)$1	273	77	87	24.4444
gggg"""fff	chr16:2821194-2821489(+)$1	295	150	160	16.9444
::::::::::	chr2:55200068-55200349(-)$1	281	1	11	17.5925
MMMMJJJJJJ	chr1:226548788-226549030(-)$1	242	85	95	21.1111
======4444	chr7:54819920-54820218(-)$1	298	214	224	24.4444
b[dddd[fff	chr2:55199261-55199509(-)$1	248	29	39	16.5740

#DB
(.((((((((	chr11:18425225-18425460(+)$1	1	3	13	17.4999
))).))))))	chr17:56168019-56168259(+)$1	1	197	207	16.7592
......((((	chrX:152481641-152481902(-)$1	1	23	33	21.0185
((((.(((..	chr11:5290583-5290796(-)$1	1	147	157	17.4074
(.........	chr22:32353309-32353606(+)$1	1	82	92	24.4444
))))))))))	chr19:11172478-11172793(+)$1	1	278	288	21.1111
..........	chr5:179041637-179041883(-)$1	1	76	86	24.4444
))))))))..	chr6:8079815-8080107(-)$1	1	132	142	17.4999
...(((((((	chr17:62495703-62495950(-)$1	1	95	105	19.9999
..........	chr11:70281346-70281585(+)$1	1	13	23	24.4444
((((((((((	chrX:70518218-70518456(+)$1	1	85	95	20.6481
))))))))))	chr12:57057470-57057725(-)$1	1	225	235	20.9259
.....(((((	chr16:21994357-21994651(+)$1	1	8	18	21.2962
..........	chr14:23795198-23795439(+)$1	1	6	16	24.4444
.)))......	chr19:1258626-1258868(+)$1	1	213	223	20.5555
.......(((	chr1:203823039-203823285(+)$1	1	9	19	16.3888
((((((((((	chr7:127231549-127231838(+)$1	1	86	96	24.4444
..........	chr16:31202619-31202847(+)$1	1	79	89	24.4444
....))))))	chr8:101734003-101734236(-)$1	1	76	86	20.2777
))))).((((	chr1:46083631-46083944(+)$1	1	228	238	17.1296
((((((((((	chr16:31202250-31202500(+)$1	1	15	25	16.3888
..........	chr11:5269426-5269686(-)$1	1	202	212	20.5555
.)))))).))	chr15:78575607-78575964(-)$1	1	80	90	16.9444
.........)	chr1:231701665-231701906(+)$1	1	87	97	21.1111
).........	chrX:70520790-70521051(+)$1	1	114	124	24.4444
(((((..(((	chr1:150594859-150595146(-)$1	1	26	36	20.6481
....))))))	chr8:101733999-101734203(-)$1	1	43	53	20.2777
((((((((..	chr17:56168311-56168573(+)$1	1	90	100	20.2777
((...(((..	chr6:75949916-75950174(-)$1	1	49	59	24.4444
(..((((((.	chr6:49572888-49573177(-)$1	1	127	137	21.2962
.)))))))))	chr14:92583741-92584052(-)$1	1	49	59	19.6296
((((.((...	chr11:118279747-118279997(+)$1	1	97	107	17.0370
(((((....(	chr2:28974738-28974995(+)$1	1	31	41	16.8518
))))...)))	chr9:131018059-131018319(-)$1	1	168	178	17.8703
((((((.(((	chr7:26231388-26231634(-)$1	1	187	197	21.2962
((((((((((	chr12:72003723-72003974(-)$1	1	60	70	20.5555
))).......	chr7:96318042-96318336(-)$1	1	41	51	17.2222
..(((.....	chr14:23495146-23495414(-)$1	1	229	239	16.4814
))))......	chr19:893454-893691(+)$1	1	131	141	24.4444
))))...)))	chr1:28865231-28865483(+)$1	1	186	196	17.1296
.((.......	chr3:179342020-179342310(+)$1	1	61	71	17.4999
..........	chr15:44063588-44063836(+)$1	1	102	112	19.9999
(((...((((	chr15:44063537-44063788(+)$1	1	153	163	19.9999
..((((.(((	chr17:38153991-38154297(+)$1	1	165	175	16.9444
..........	chr18:9124770-9125049(+)$1	1	29	39	24.4444
..........	chr3:128338719-128338963(-)$1	1	88	98	24.4444
((((((((..	chr7:100278975-100279225(-)$1	1	87	97	24.4444
)))......)	chr4:174252888-174253172(-)$1	1	187	197	16.9444
..........	chr7:148700585-148700858(-)$1	1	77	87	24.4444
((((...(((	chr16:2821194-2821489(+)$1	1	150	160	16.9444
..........	chr2:55200068-55200349(-)$1	1	1	11	17.5925
....((((((	chr1:226548788-226549030(-)$1	1	85	95	21.1111
))))))....	chr7:54819920-54820218(-)$1	1	214	224	24.4444
(.((((.(((	chr2:55199261-55199509(-)$1	1	29	39	16.5740

#PSSM
U : 0.81	u : 0.16	A : 0.01	
U : 0.62	u : 0.16	G : 0.11	A : 0.07	C : 0.01	
U : 0.72	u : 0.16	G : 0.07	A : 0.01	C : 0.01	
U : 0.68	u : 0.14	A : 0.05	C : 0.05	G : 0.03	g : 0.01	
U : 0.72	u : 0.16	G : 0.05	A : 0.05	
U : 0.57	u : 0.16	A : 0.11	C : 0.07	G : 0.07	
U : 0.64	u : 0.16	A : 0.11	G : 0.05	C : 0.01	
U : 0.83	u : 0.16	
U : 0.77	u : 0.16	G : 0.05	
U : 0.83	u : 0.16	

#score	1095.9259259259254
#seq	54
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_CDS_m3_run2.nuc.txt

#NT
UGGAUCUGGA	chr7:150766928-150767200(+)$1	272	117	127	13.2978
UGGAGGAGGU	chr2:85769679-85769899(+)$1	220	70	80	18.1914
gggaugagga	chr9:100773535-100773772(+)$1	237	104	114	17.5531
UGGAGGAGGA	chr6:30632856-30633124(-)$1	268	95	105	21.9148
uggaggagga	chr20:3765553-3765860(-)$1	307	72	82	21.9148
UGGAGGAGAA	chr16:89971382-89971607(+)$1	225	49	59	17.4468
AGGAUGAGGA	chr18:3456263-3456534(+)$1	271	118	128	18.1914
AGGCUGAGGA	chr17:40271468-40271688(-)$1	220	94	104	13.7234
UGGAGGAGGA	chr8:94746733-94747045(-)$1	312	298	308	21.9148
CGGAGGAGGC	chr2:54197728-54198041(-)$1	313	40	50	16.0638
CUGAUGAGGA	chr8:94745951-94746210(-)$1	259	39	49	13.1914
UGGACAAGGA	chr16:89350981-89351318(-)$1	337	233	243	15.4255
gggaugagga	chr9:100773458-100773728(+)$1	270	181	191	17.5531
UGGAGCAGGA	chr6:31936968-31937257(+)$1	289	45	55	18.9361
AGGAGGAGGA	chr1:150551456-150551804(-)$1	348	300	310	19.9999
UGGAGCUGGA	chr8:124408489-124408772(-)$1	283	123	133	15.1063
UGGAGGAGGA	chr7:26233183-26233415(-)$1	232	129	139	21.9148
AGAAUGAGGA	chr2:232576515-232576781(+)$1	266	82	92	13.5106
UGGAGGAGGU	chr11:116661379-116661660(-)$1	281	14	24	18.1914
UGGCUCAGGA	chr6:43014573-43014820(-)$1	247	108	118	12.6595
AGGAGCAGGA	chr11:47236646-47236894(+)$1	248	107	117	17.0212
UGGAGCAGGG	chr8:145979019-145979284(-)$1	265	139	149	15.3191
gggagaagga	chr14:23528460-23528707(-)$1	247	112	122	15.8510
UGGAGGAGCC	chr14:39736600-39736808(+)$1	208	64	74	14.2553
UGGAGGAGCC	chr14:39736608-39736858(+)$1	250	56	66	14.2553
AGGAGCAGGA	chr11:47236694-47236925(+)$1	231	59	69	17.0212
UGGAGGAGGC	chr2:75937752-75938063(-)$1	311	222	232	18.5106
UGGAGGAUGA	chrX:18942408-18942679(-)$1	271	126	136	17.1276
UGGAGCAGCA	chr1:2125078-2125387(-)$1	309	234	244	14.6808
UGGAGGAGGA	chr7:26233095-26233349(-)$1	254	63	73	21.9148
UGGAGGCGGG	chr2:74709632-74709926(-)$1	294	181	191	14.0425
CGGAGGAGGA	chr2:220099491-220099734(+)$1	243	157	167	19.4680
AGGAGGAGGC	chr19:1360067-1360399(+)$1	332	303	313	16.5957
aggaugagga	chr17:4575256-4575564(-)$1	308	124	134	18.1914
UGGAAGAGGA	chr11:85374902-85375178(-)$1	276	211	221	18.9361
UGGAUGAGGA	chr17:74287006-74287269(-)$1	263	111	121	20.1063
CGGACGUGGA	chr22:50870602-50870859(+)$1	257	168	178	12.6595
UGGAUAUGGA	chr4:83347514-83347719(-)$1	205	72	82	12.7659
UCGAGGAGGA	chr20:25457487-25457754(-)$1	267	238	248	17.3404
GGGAGGAGGA	chr12:72056719-72057048(-)$1	329	185	195	19.3617
UGGAGGAGGA	chr8:94746584-94746916(-)$1	332	169	179	21.9148
UGGUGGAGGG	chr16:16248442-16248744(-)$1	302	22	32	13.7234
CUGAGGAGGA	chr8:94746411-94746696(-)$1	285	21	31	15.0000
UGCAAGAGGA	chr11:61036292-61036582(-)$1	290	110	120	14.2553
AGGAUGUGGA	chr16:24805804-24806066(+)$1	262	141	151	14.3617
UGGAGGAGGA	chr21:47569911-47570164(-)$1	253	106	116	21.9148

#otherMatches

#Struct PSSM
ccc]cccbbb	chr2:70056989-70057298(+)$1	309	243	253	18.1914
hhh:ddddoo	chr7:150766928-150767200(+)$1	272	117	127	13.2978
ccc####ccc	chr2:85769679-85769899(+)$1	220	70	80	18.1914
dd"""ggggg	chr9:100773535-100773772(+)$1	237	104	114	17.5531
EEE{CCC{CC	chr6:30632856-30633124(-)$1	268	95	105	21.9148
HHKKDDDD{E	chr20:3765553-3765860(-)$1	307	72	82	21.9148
ddd&&&&&&&	chr16:89971382-89971607(+)$1	225	49	59	17.4468
ffff[dddd#	chr18:3456263-3456534(+)$1	271	118	128	18.1914
=====22bb:	chr17:40271468-40271688(-)$1	220	94	104	13.7234
GGGGGGYYA:	chr8:94746733-94747045(-)$1	312	298	308	21.9148
nnnna4444b	chr2:54197728-54198041(-)$1	313	40	50	16.0638
eeee888888	chr8:94745951-94746210(-)$1	259	39	49	13.1914
gggggg]ggg	chr16:89350981-89351318(-)$1	337	233	243	15.4255
iiiiiii:::	chr9:100773458-100773728(+)$1	270	181	191	17.5531
ccc!!dddd"	chr6:31936968-31937257(+)$1	289	45	55	18.9361
IIIIIIIIDD	chr1:150551456-150551804(-)$1	348	300	310	19.9999
IIII?????H	chr8:124408489-124408772(-)$1	283	123	133	15.1063
iiiii]ccc5	chr7:26233183-26233415(-)$1	232	129	139	21.9148
ggggg]ccc3	chr2:232576515-232576781(+)$1	266	82	92	13.5106
hhhhhh[abb	chr11:116661379-116661660(-)$1	281	14	24	18.1914
c22ffffff]	chr6:43014573-43014820(-)$1	247	108	118	12.6595
2dddd55555	chr11:47236646-47236894(+)$1	248	107	117	17.0212
cbb]gggggg	chr8:145979019-145979284(-)$1	265	139	149	15.3191
ccssssssss	chr14:23528460-23528707(-)$1	247	112	122	15.8510
eee!!ccc""	chr14:39736600-39736808(+)$1	208	64	74	14.2553
eee!!ccc""	chr14:39736608-39736858(+)$1	250	56	66	14.2553
MFFFFFFLLL	chr11:47236694-47236925(+)$1	231	59	69	17.0212
FFFFFYYJJJ	chr2:75937752-75938063(-)$1	311	222	232	18.5106
ccc[cccccc	chrX:18942408-18942679(-)$1	271	126	136	17.1276
EEE:ccceee	chr1:2125078-2125387(-)$1	309	234	244	14.6808
iiiii::EEE	chr7:26233095-26233349(-)$1	254	63	73	21.9148
ee!!cccmmm	chr2:74709632-74709926(-)$1	294	181	191	14.0425
mbb:::::::	chr2:220099491-220099734(+)$1	243	157	167	19.4680
EEEE::dddd	chr19:1360067-1360399(+)$1	332	303	313	16.5957
EEEKKCCCKK	chr17:4575256-4575564(-)$1	308	124	134	18.1914
hhh]dddd44	chr11:85374902-85375178(-)$1	276	211	221	18.9361
fffff%%%%%	chr17:74287006-74287269(-)$1	263	111	121	20.1063
]bb22ddddd	chr22:50870602-50870859(+)$1	257	168	178	12.6595
fff]dddd22	chr4:83347514-83347719(-)$1	205	72	82	12.7659
CCYYEEEEE}	chr20:25457487-25457754(-)$1	267	238	248	17.3404
meeeee:ccc	chr12:72056719-72057048(-)$1	329	185	195	19.3617
fffffnnnnn	chr8:94746584-94746916(-)$1	332	169	179	21.9148
[bb[ccc[hh	chr16:16248442-16248744(-)$1	302	22	32	13.7234
eeee22bb22	chr8:94746411-94746696(-)$1	285	21	31	15.0000
eccc[ccc!!	chr11:61036292-61036582(-)$1	290	110	120	14.2553
ccc22cccee	chr16:24805804-24806066(+)$1	262	141	151	14.3617
ooggggggga	chr21:47569911-47570164(-)$1	253	106	116	21.9148

#DB
))).))))))	chr2:70056989-70057298(+)$1	1	243	253	18.1914
))).((((..	chr7:150766928-150767200(+)$1	1	117	127	13.2978
(((....(((	chr2:85769679-85769899(+)$1	1	70	80	18.1914
((...(((((	chr9:100773535-100773772(+)$1	1	104	114	17.5531
(((.(((.((	chr6:30632856-30633124(-)$1	1	95	105	21.9148
((..((((.(	chr20:3765553-3765860(-)$1	1	72	82	21.9148
(((.......	chr16:89971382-89971607(+)$1	1	49	59	17.4468
((((.((((.	chr18:3456263-3456534(+)$1	1	118	128	18.1914
)))))..)).	chr17:40271468-40271688(-)$1	1	94	104	13.7234
))))))..).	chr8:94746733-94747045(-)$1	1	298	308	21.9148
....)....)	chr2:54197728-54198041(-)$1	1	40	50	16.0638
))))......	chr8:94745951-94746210(-)$1	1	39	49	13.1914
)))))).)))	chr16:89350981-89351318(-)$1	1	233	243	15.4255
)))))))...	chr9:100773458-100773728(+)$1	1	181	191	17.5531
(((..((((.	chr6:31936968-31937257(+)$1	1	45	55	18.9361
))))))))))	chr1:150551456-150551804(-)$1	1	300	310	19.9999
)))).....)	chr8:124408489-124408772(-)$1	1	123	133	15.1063
))))).))).	chr7:26233183-26233415(-)$1	1	129	139	21.9148
))))).))).	chr2:232576515-232576781(+)$1	1	82	92	13.5106
((((((.(((	chr11:116661379-116661660(-)$1	1	14	24	18.1914
)..)))))).	chr6:43014573-43014820(-)$1	1	108	118	12.6595
.)))).....	chr11:47236646-47236894(+)$1	1	107	117	17.0212
))).))))))	chr8:145979019-145979284(-)$1	1	139	149	15.3191
((........	chr14:23528460-23528707(-)$1	1	112	122	15.8510
(((..(((..	chr14:39736600-39736808(+)$1	1	64	74	14.2553
(((..(((..	chr14:39736608-39736858(+)$1	1	56	66	14.2553
.((((((...	chr11:47236694-47236925(+)$1	1	59	69	17.0212
)))))..)))	chr2:75937752-75938063(-)$1	1	222	232	18.5106
(((.((((((	chrX:18942408-18942679(-)$1	1	126	136	17.1276
))).((((((	chr1:2125078-2125387(-)$1	1	234	244	14.6808
)))))..(((	chr7:26233095-26233349(-)$1	1	63	73	21.9148
((..(((...	chr2:74709632-74709926(-)$1	1	181	191	14.0425
.)).......	chr2:220099491-220099734(+)$1	1	157	167	19.4680
))))..((((	chr19:1360067-1360399(+)$1	1	303	313	16.5957
(((..(((..	chr17:4575256-4575564(-)$1	1	124	134	18.1914
))).))))..	chr11:85374902-85375178(-)$1	1	211	221	18.9361
(((((.....	chr17:74287006-74287269(-)$1	1	111	121	20.1063
.))..)))))	chr22:50870602-50870859(+)$1	1	168	178	12.6595
))).))))..	chr4:83347514-83347719(-)$1	1	72	82	12.7659
))..))))).	chr20:25457487-25457754(-)$1	1	238	248	17.3404
.))))).(((	chr12:72056719-72057048(-)$1	1	185	195	19.3617
(((((.....	chr8:94746584-94746916(-)$1	1	169	179	21.9148
.((.(((.((	chr16:16248442-16248744(-)$1	1	22	32	13.7234
))))..))..	chr8:94746411-94746696(-)$1	1	21	31	15.0000
)(((.(((..	chr11:61036292-61036582(-)$1	1	110	120	14.2553
)))..)))((	chr16:24805804-24806066(+)$1	1	141	151	14.3617
..)))))))(	chr21:47569911-47570164(-)$1	1	106	116	21.9148

#PSSM
U : 0.57	A : 0.19	C : 0.10	g : 0.06	u : 0.02	a : 0.02	G : 0.02	
G : 0.82	g : 0.10	U : 0.04	C : 0.02	
G : 0.85	g : 0.10	A : 0.02	C : 0.02	
A : 0.82	a : 0.10	C : 0.04	U : 0.02	
G : 0.59	U : 0.21	u : 0.06	g : 0.04	C : 0.04	A : 0.04	
G : 0.68	C : 0.17	g : 0.08	A : 0.04	a : 0.02	
A : 0.76	U : 0.10	a : 0.10	C : 0.02	
G : 0.87	g : 0.10	U : 0.02	
G : 0.80	g : 0.10	C : 0.06	A : 0.02	
A : 0.68	a : 0.10	C : 0.10	G : 0.06	U : 0.04	

#score	801.4893617021277
#seq	47
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_CDS_m1_run2.nuc.txt

#NT
UCCUUUUCUUG	chr3:99569629-99569892(+)$1	263	225	236	19.6666
UCCUUUUCUUU	chr15:59191621-59191939(+)$1	318	97	108	19.9047
UCCCUUUCUGC	chr17:55509822-55510161(+)$1	339	168	179	16.5714
uccaauucuuc	chr5:59423373-59423635(-)$1	262	188	199	18.2380
UCCAUUUCUCA	chr2:186659248-186659494(-)$1	246	212	223	17.5238
UCCUCUUCUUG	chr19:45912459-45912728(-)$1	269	112	123	21.3333
UCCACUUCAGC	chr3:99569369-99569631(+)$1	262	32	43	14.9047
UCCAGUUCUUG	chr3:99569009-99569301(+)$1	292	122	133	18.4761
UCCUCUUCUGA	chr7:141478312-141478615(+)$1	303	99	110	18.4761
UCCUCUUCUUG	chr19:45911825-45912096(-)$1	271	110	121	21.3333
UCCACUUCUCU	chr3:99568245-99568495(+)$1	250	115	126	20.1428
UCCUCUGCUUG	chr5:112228337-112228641(-)$1	304	18	29	16.8095
UCCACUUCUUG	chr3:99568521-99568758(+)$1	237	100	111	21.3333
UCCCUUUCUUU	chr2:186657735-186657997(-)$1	262	66	77	19.1904
UUCUCUUCUUC	chr3:99568704-99568988(+)$1	284	85	96	16.5714
uccccuucucu	chr3:11848721-11849008(-)$1	287	46	57	19.4285
UCCCCUUCUCU	chr22:51162458-51162748(+)$1	290	224	235	19.4285
UCCCCUUCUUU	chr12:57113432-57113699(-)$1	267	93	104	20.8571
UCCUCUUCAUC	chr2:242688146-242688438(+)$1	292	81	92	17.0476
UCCAUUUCUCA	chr2:186659140-186659385(-)$1	245	103	114	17.5238

#otherMatches

#Struct PSSM
g:FFFFFF~~~	chr3:99568176-99568417(+)$1	241	184	195	20.1428
999dddd]eee	chr3:99569629-99569892(+)$1	263	225	236	19.6666
555ffffff]d	chr15:59191621-59191939(+)$1	318	97	108	19.9047
::::::::::e	chr17:55509822-55510161(+)$1	339	168	179	16.5714
d>>>>>>>>>>	chr5:59423373-59423635(-)$1	262	188	199	18.2380
^^^^^^^^^^^	chr2:186659248-186659494(-)$1	246	212	223	17.5238
>>>>>>>>>>b	chr19:45912459-45912728(-)$1	269	112	123	21.3333
VVVVVVVVVDD	chr3:99569369-99569631(+)$1	262	32	43	14.9047
ddqqqqqqqqd	chr3:99569009-99569301(+)$1	292	122	133	18.4761
i!!bbmmmmbb	chr7:141478312-141478615(+)$1	303	99	110	18.4761
0000000a22i	chr19:45911825-45912096(-)$1	271	110	121	21.3333
g:gggggggmm	chr3:99568245-99568495(+)$1	250	115	126	20.1428
GGGGGGKKGGG	chr5:112228337-112228641(-)$1	304	18	29	16.8095
::dddd####h	chr3:99568521-99568758(+)$1	237	100	111	21.3333
^^^^^^^^^^^	chr2:186657735-186657997(-)$1	262	66	77	19.1904
]bb::::::::	chr3:99568704-99568988(+)$1	284	85	96	16.5714
:::::::::hh	chr3:11848721-11849008(-)$1	287	46	57	19.4285
c]ddddBB}EE	chr22:51162458-51162748(+)$1	290	224	235	19.4285
>>>>>>fffff	chr12:57113432-57113699(-)$1	267	93	104	20.8571
mmmbb]bbhhh	chr2:242688146-242688438(+)$1	292	81	92	17.0476
FFFFFF:::::	chr2:186659140-186659385(-)$1	245	103	114	17.5238

#DB
).))))))...	chr3:99568176-99568417(+)$1	1	184	195	20.1428
...)))).)))	chr3:99569629-99569892(+)$1	1	225	236	19.6666
...)))))).)	chr15:59191621-59191939(+)$1	1	97	108	19.9047
..........(	chr17:55509822-55510161(+)$1	1	168	179	16.5714
)..........	chr5:59423373-59423635(-)$1	1	188	199	18.2380
...........	chr2:186659248-186659494(-)$1	1	212	223	17.5238
..........)	chr19:45912459-45912728(-)$1	1	112	123	21.3333
.........((	chr3:99569369-99569631(+)$1	1	32	43	14.9047
((........)	chr3:99569009-99569301(+)$1	1	122	133	18.4761
(..((....))	chr7:141478312-141478615(+)$1	1	99	110	18.4761
.......)..)	chr19:45911825-45912096(-)$1	1	110	121	21.3333
).(((((((..	chr3:99568245-99568495(+)$1	1	115	126	20.1428
((((((..(((	chr5:112228337-112228641(-)$1	1	18	29	16.8095
..((((....(	chr3:99568521-99568758(+)$1	1	100	111	21.3333
...........	chr2:186657735-186657997(-)$1	1	66	77	19.1904
.))........	chr3:99568704-99568988(+)$1	1	85	96	16.5714
.........((	chr3:11848721-11849008(-)$1	1	46	57	19.4285
).)))))).))	chr22:51162458-51162748(+)$1	1	224	235	19.4285
......)))))	chr12:57113432-57113699(-)$1	1	93	104	20.8571
...)).)))))	chr2:242688146-242688438(+)$1	1	81	92	17.0476
((((((.....	chr2:186659140-186659385(-)$1	1	103	114	17.5238

#PSSM
U : 0.90	u : 0.09	
C : 0.85	c : 0.09	U : 0.04	
C : 0.90	c : 0.09	
U : 0.38	A : 0.33	C : 0.19	a : 0.04	c : 0.04	
C : 0.57	U : 0.28	a : 0.04	G : 0.04	c : 0.04	
U : 0.90	u : 0.09	
U : 0.85	u : 0.09	G : 0.04	
C : 0.90	c : 0.09	
U : 0.80	u : 0.09	A : 0.09	
U : 0.52	C : 0.23	G : 0.14	u : 0.04	c : 0.04	
U : 0.28	G : 0.28	C : 0.19	A : 0.14	c : 0.04	u : 0.04	

#score	394.90476190476215
#seq	21
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_UTR_m2_run1.nuc.txt

#NT
GGGCAGG	chr17:4843887-4844221(+)$1	334	236	243	13.7857
GGGCCGG	chr12:49524980-49525274(-)$1	294	2	9	16.9285
GGGCCUG	chr11:32605279-32605544(+)$1	265	143	150	12.9999
GAGCCGG	chr1:110950106-110950351(-)$1	245	85	92	12.7857
GGGCUGG	chr6:27114793-27115052(+)$1	259	175	182	14.0714
gggcagg	chr6:86352563-86352827(-)$1	264	41	48	13.7857
GGGGCGG	chr17:16284307-16284595(+)$1	288	102	109	12.8571
GGGCCGG	chr6:27775856-27776113(+)$1	257	192	199	16.9285
GGGCUGG	chr6:31704057-31704309(-)$1	252	57	64	14.0714
GGGCUGG	chr6:31704109-31704393(-)$1	284	141	148	14.0714
GAGCCGG	chr2:176046283-176046528(-)$1	245	66	73	12.7857
GGGCUGG	chr1:26232779-26232985(-)$1	206	173	180	14.0714
GGGCCAG	chr1:145438402-145438632(+)$1	230	21	28	12.9999
GGGCCAG	chr14:50052926-50053207(-)$1	281	99	106	12.9999
GGGGCGG	chr17:56429328-56429653(-)$1	325	13	20	12.8571
GGGCUGG	chr12:56122635-56122890(-)$1	255	187	194	14.0714
CGGCCGG	chr12:6643913-6644128(+)$1	215	18	25	12.7857
GAGCCGG	chr15:64385842-64386171(-)$1	329	270	277	12.7857
GGGCCAG	chr5:85913657-85913915(+)$1	258	220	227	12.9999
GGGACGG	chr6:10723323-10723574(+)$1	251	53	60	12.6428
GCGCCGG	chr10:75541713-75542002(+)$1	289	227	234	12.7142
CGGCCGG	chr12:111180546-111180789(-)$1	243	17	24	12.7857
GGGCCAG	chr16:18800334-18800541(-)$1	207	4	11	12.9999
GGGUCGG	chr17:73042918-73043161(-)$1	243	130	137	12.5714
GGGCCGG	chr11:65625465-65625753(-)$1	288	85	92	16.9285
GGGCCGG	chr17:41150359-41150589(+)$1	230	109	116	16.9285
AGGCCGG	chr6:170862155-170862478(-)$1	323	41	48	12.4999
GGGCGGG	chr1:109968899-109969161(-)$1	262	59	66	13.6428
GGGCCGG	chr12:49658768-49659070(+)$1	302	79	86	16.9285
GGGCCUG	chr11:118272322-118272533(+)$1	211	203	210	12.9999
GGCCCGG	chr6:75953335-75953601(-)$1	266	30	37	12.3571
GGGCCUG	chr5:140026967-140027302(-)$1	335	175	182	12.9999
GUGCCGG	chr11:8704648-8704852(+)$1	204	168	175	12.5714
UGGCCGG	chr14:50087190-50087445(-)$1	255	29	36	12.4999
GGGCGGG	chr22:24236485-24236756(+)$1	271	38	45	13.6428
GGGCCGG	chr22:20104910-20105262(+)$1	352	22	29	16.9285
GGGGCGG	chr15:66797025-66797283(-)$1	258	49	56	12.8571
CGGCCGG	chr8:125551267-125551581(+)$1	314	136	143	12.7857
GGGCCGG	chr1:19923404-19923696(+)$1	292	95	102	16.9285
gggccgg	chr8:30669989-30670286(-)$1	297	267	274	16.9285
GGGGCGG	chr14:21737411-21737684(-)$1	273	52	59	12.8571
CGGCCGG	chr5:177019109-177019432(+)$1	323	71	78	12.7857
GGGCAGG	chr19:9938489-9938764(+)$1	275	52	59	13.7857
GGCCCGG	chrX:119005747-119006053(+)$1	306	242	249	12.3571
GCGCCGG	chr19:18682573-18682820(+)$1	247	150	157	12.7142
GGGCGGG	chr7:128379315-128379579(+)$1	264	63	70	13.6428
GGGCCCG	chr8:56986931-56987163(-)$1	232	14	21	12.9285
GGGACGG	chr5:177631436-177631735(+)$1	299	114	121	12.6428
GCGCCGG	chr2:231577593-231577913(+)$1	320	51	58	12.7142
GGGCCGG	chr1:8021672-8021944(+)$1	272	139	146	16.9285
GGGCCUG	chr1:111991988-111992304(+)$1	316	307	314	12.9999
GGGCCGG	chr6:27860776-27861050(-)$1	274	256	263	16.9285
gggcugg	chr12:8088512-8088867(-)$1	355	9	16	14.0714
CGGCCGG	chr11:65769871-65770138(+)$1	267	126	133	12.7857
GGGCAGG	chr5:132202459-132202692(+)$1	233	9	16	13.7857
GGGCCGG	chr20:2451244-2451532(-)$1	288	26	33	16.9285
GGGCUGG	chr2:98262431-98262750(+)$1	319	7	14	14.0714
GGGCUGG	chr6:31703977-31704257(-)$1	280	5	12	14.0714
GGGCUGG	chr15:63449498-63449762(-)$1	264	115	122	14.0714
GGGCAGG	chr15:44580970-44581218(+)$1	248	12	19	13.7857
GGGCCGG	chr8:110346477-110346751(+)$1	274	249	256	16.9285
GGGCCCG	chr2:28974686-28975030(+)$1	344	162	169	12.9285
GGGCAGG	chr12:98909426-98909679(+)$1	253	105	112	13.7857
GAGCCGG	chr22:24951875-24952129(+)$1	254	158	165	12.7857
GGGCCGG	chr2:170655287-170655538(+)$1	251	182	189	16.9285
GGGCUGG	chr20:5100422-5100689(-)$1	267	17	24	14.0714
GGCCCGG	chr11:63742000-63742245(+)$1	245	196	203	12.3571
GGGCGGG	chr11:17099065-17099318(-)$1	253	182	189	13.6428
GGGCCCG	chr1:45987397-45987650(-)$1	253	230	237	12.9285

#otherMatches

#Struct PSSM
ee]ffff	chr2:47403478-47403739(-)$1	261	70	77	12.8571
GBB::GG	chr17:4843887-4844221(+)$1	334	236	243	13.7857
HHHHHHH	chr12:49524980-49525274(-)$1	294	2	9	16.9285
EEE~~~~	chr11:32605279-32605544(+)$1	265	143	150	12.9999
dd[bbnn	chr1:110950106-110950351(-)$1	245	85	92	12.7857
dddbb]e	chr6:27114793-27115052(+)$1	259	175	182	14.0714
LCCCLLL	chr6:86352563-86352827(-)$1	264	41	48	13.7857
gggggg"	chr17:16284307-16284595(+)$1	288	102	109	12.8571
2cccggg	chr6:27775856-27776113(+)$1	257	192	199	16.9285
DDDDDDD	chr6:31704057-31704309(-)$1	252	57	64	14.0714
DDDDDDD	chr6:31704109-31704393(-)$1	284	141	148	14.0714
ccc!!dd	chr2:176046283-176046528(-)$1	245	66	73	12.7857
ccddddq	chr1:26232779-26232985(-)$1	206	173	180	14.0714
iiiiiii	chr1:145438402-145438632(+)$1	230	21	28	12.9999
mmbb22b	chr14:50052926-50053207(-)$1	281	99	106	12.9999
!gggggg	chr17:56429328-56429653(-)$1	325	13	20	12.8571
FFFFF//	chr12:56122635-56122890(-)$1	255	187	194	14.0714
ecccmmm	chr12:6643913-6644128(+)$1	215	18	25	12.7857
F::eeee	chr15:64385842-64386171(-)$1	329	270	277	12.7857
ggg:::D	chr5:85913657-85913915(+)$1	258	220	227	12.9999
ddd22ff	chr6:10723323-10723574(+)$1	251	53	60	12.6428
[ddddqq	chr10:75541713-75542002(+)$1	289	227	234	12.7142
wdddd:H	chr12:111180546-111180789(-)$1	243	17	24	12.7857
{DDDD::	chr16:18800334-18800541(-)$1	207	4	11	12.9999
=======	chr17:73042918-73043161(-)$1	243	130	137	12.5714
hhhhhhG	chr11:65625465-65625753(-)$1	288	85	92	16.9285
ddddHHH	chr17:41150359-41150589(+)$1	230	109	116	16.9285
:gggggg	chr6:170862155-170862478(-)$1	323	41	48	12.4999
EEE{CCC	chr1:109968899-109969161(-)$1	262	59	66	13.6428
eeeee44	chr12:49658768-49659070(+)$1	302	79	86	16.9285
]gggggg	chr11:118272322-118272533(+)$1	211	203	210	12.9999
E{CCC{A	chr6:75953335-75953601(-)$1	266	30	37	12.3571
}DDDDCC	chr5:140026967-140027302(-)$1	335	175	182	12.9999
555dddd	chr11:8704648-8704852(+)$1	204	168	175	12.5714
EEEEE::	chr14:50087190-50087445(-)$1	255	29	36	12.4999
dddCCCF	chr22:24236485-24236756(+)$1	271	38	45	13.6428
Cccc[ee	chr22:20104910-20105262(+)$1	352	22	29	16.9285
MMMMJJJ	chr15:66797025-66797283(-)$1	258	49	56	12.8571
q======	chr8:125551267-125551581(+)$1	314	136	143	12.7857
a22ffff	chr1:19923404-19923696(+)$1	292	95	102	16.9285
FFFFBB}	chr8:30669989-30670286(-)$1	297	267	274	16.9285
iiiiiii	chr14:21737411-21737684(-)$1	273	52	59	12.8571
ggggggc	chr5:177019109-177019432(+)$1	323	71	78	12.7857
hhhhhhh	chr19:9938489-9938764(+)$1	275	52	59	13.7857
hhhhhhd	chrX:119005747-119006053(+)$1	306	242	249	12.3571
JJJJJJ}	chr19:18682573-18682820(+)$1	247	150	157	12.7142
HHeeeee	chr7:128379315-128379579(+)$1	264	63	70	13.6428
[a[iiii	chr8:56986931-56987163(-)$1	232	14	21	12.9285
====###	chr5:177631436-177631735(+)$1	299	114	121	12.6428
bb[bboo	chr2:231577593-231577913(+)$1	320	51	58	12.7142
b]fffff	chr1:8021672-8021944(+)$1	272	139	146	16.9285
a]dddd:	chr1:111991988-111992304(+)$1	316	307	314	12.9999
cDDDDEE	chr6:27860776-27861050(-)$1	274	256	263	16.9285
=====ff	chr12:8088512-8088867(-)$1	355	9	16	14.0714
g]ccc::	chr11:65769871-65770138(+)$1	267	126	133	12.7857
DDdddd"	chr5:132202459-132202692(+)$1	233	9	16	13.7857
DDDDEEE	chr20:2451244-2451532(-)$1	288	26	33	16.9285
GGDDDD{	chr2:98262431-98262750(+)$1	319	7	14	14.0714
HHHDDDD	chr6:31703977-31704257(-)$1	280	5	12	14.0714
::IIIII	chr15:63449498-63449762(-)$1	264	115	122	14.0714
FFFFKKD	chr15:44580970-44581218(+)$1	248	12	19	13.7857
gggggg3	chr8:110346477-110346751(+)$1	274	249	256	16.9285
hh]ccc2	chr2:28974686-28975030(+)$1	344	162	169	12.9285
[ccc[bb	chr12:98909426-98909679(+)$1	253	105	112	13.7857
ccbbeee	chr22:24951875-24952129(+)$1	254	158	165	12.7857
GGGGG::	chr2:170655287-170655538(+)$1	251	182	189	16.9285
C{CCCEE	chr20:5100422-5100689(-)$1	267	17	24	14.0714
ccc[bb[	chr11:63742000-63742245(+)$1	245	196	203	12.3571
2eeeee]	chr11:17099065-17099318(-)$1	253	182	189	13.6428
fffffa=	chr1:45987397-45987650(-)$1	253	230	237	12.9285

#DB
)).))))	chr2:47403478-47403739(-)$1	1	70	77	12.8571
)))..((	chr17:4843887-4844221(+)$1	1	236	243	13.7857
(((((((	chr12:49524980-49525274(-)$1	1	2	9	16.9285
)))....	chr11:32605279-32605544(+)$1	1	143	150	12.9999
((.((..	chr1:110950106-110950351(-)$1	1	85	92	12.7857
))))).)	chr6:27114793-27115052(+)$1	1	175	182	14.0714
.(((...	chr6:86352563-86352827(-)$1	1	41	48	13.7857
((((((.	chr17:16284307-16284595(+)$1	1	102	109	12.8571
.))))))	chr6:27775856-27776113(+)$1	1	192	199	16.9285
(((((((	chr6:31704057-31704309(-)$1	1	57	64	14.0714
(((((((	chr6:31704109-31704393(-)$1	1	141	148	14.0714
(((..((	chr2:176046283-176046528(-)$1	1	66	73	12.7857
((((((.	chr1:26232779-26232985(-)$1	1	173	180	14.0714
(((((((	chr1:145438402-145438632(+)$1	1	21	28	12.9999
..))..)	chr14:50052926-50053207(-)$1	1	99	106	12.9999
.((((((	chr17:56429328-56429653(-)$1	1	13	20	12.8571
)))))..	chr12:56122635-56122890(-)$1	1	187	194	14.0714
((((...	chr12:6643913-6644128(+)$1	1	18	25	12.7857
)..((((	chr15:64385842-64386171(-)$1	1	270	277	12.7857
)))...)	chr5:85913657-85913915(+)$1	1	220	227	12.9999
)))..))	chr6:10723323-10723574(+)$1	1	53	60	12.6428
.((((..	chr10:75541713-75542002(+)$1	1	227	234	12.7142
.)))).(	chr12:111180546-111180789(-)$1	1	17	24	12.7857
.((((..	chr16:18800334-18800541(-)$1	1	4	11	12.9999
(((((((	chr17:73042918-73043161(-)$1	1	130	137	12.5714
))))))(	chr11:65625465-65625753(-)$1	1	85	92	16.9285
))))(((	chr17:41150359-41150589(+)$1	1	109	116	16.9285
.((((((	chr6:170862155-170862478(-)$1	1	41	48	12.4999
(((.(((	chr1:109968899-109969161(-)$1	1	59	66	13.6428
)))))..	chr12:49658768-49659070(+)$1	1	79	86	16.9285
.))))))	chr11:118272322-118272533(+)$1	1	203	210	12.9999
(.(((.(	chr6:75953335-75953601(-)$1	1	30	37	12.3571
.))))((	chr5:140026967-140027302(-)$1	1	175	182	12.9999
...))))	chr11:8704648-8704852(+)$1	1	168	175	12.5714
(((((..	chr14:50087190-50087445(-)$1	1	29	36	12.4999
)))((((	chr22:24236485-24236756(+)$1	1	38	45	13.6428
((((.((	chr22:20104910-20105262(+)$1	1	22	29	16.9285
....(((	chr15:66797025-66797283(-)$1	1	49	56	12.8571
.))))))	chr8:125551267-125551581(+)$1	1	136	143	12.7857
)..))))	chr1:19923404-19923696(+)$1	1	95	102	16.9285
)))))).	chr8:30669989-30670286(-)$1	1	267	274	16.9285
(((((((	chr14:21737411-21737684(-)$1	1	52	59	12.8571
(((((((	chr5:177019109-177019432(+)$1	1	71	78	12.7857
)))))))	chr19:9938489-9938764(+)$1	1	52	59	13.7857
(((((((	chrX:119005747-119006053(+)$1	1	242	249	12.3571
)))))).	chr19:18682573-18682820(+)$1	1	150	157	12.7142
(((((((	chr7:128379315-128379579(+)$1	1	63	70	13.6428
.(.((((	chr8:56986931-56987163(-)$1	1	14	21	12.9285
((((...	chr5:177631436-177631735(+)$1	1	114	121	12.6428
((.((..	chr2:231577593-231577913(+)$1	1	51	58	12.7142
).)))))	chr1:8021672-8021944(+)$1	1	139	146	16.9285
).)))).	chr1:111991988-111992304(+)$1	1	307	314	12.9999
)))))))	chr6:27860776-27861050(-)$1	1	256	263	16.9285
(((((((	chr12:8088512-8088867(-)$1	1	9	16	14.0714
).)))..	chr11:65769871-65770138(+)$1	1	126	133	12.7857
((((((.	chr5:132202459-132202692(+)$1	1	9	16	13.7857
(((((((	chr20:2451244-2451532(-)$1	1	26	33	16.9285
((((((.	chr2:98262431-98262750(+)$1	1	7	14	14.0714
(((((((	chr6:31703977-31704257(-)$1	1	5	12	14.0714
..)))))	chr15:63449498-63449762(-)$1	1	115	122	14.0714
((((..(	chr15:44580970-44581218(+)$1	1	12	19	13.7857
)))))).	chr8:110346477-110346751(+)$1	1	249	256	16.9285
)).))).	chr2:28974686-28975030(+)$1	1	162	169	12.9285
.(((.((	chr12:98909426-98909679(+)$1	1	105	112	13.7857
)))))))	chr22:24951875-24952129(+)$1	1	158	165	12.7857
(((((..	chr2:170655287-170655538(+)$1	1	182	189	16.9285
(.(((((	chr20:5100422-5100689(-)$1	1	17	24	14.0714
(((.((.	chr11:63742000-63742245(+)$1	1	196	203	12.3571
.))))).	chr11:17099065-17099318(-)$1	1	182	189	13.6428
)))))))	chr1:45987397-45987650(-)$1	1	230	237	12.9285

#PSSM
G : 0.85	C : 0.07	g : 0.04	A : 0.01	U : 0.01	
G : 0.84	A : 0.05	g : 0.04	C : 0.04	U : 0.01	
G : 0.91	g : 0.04	C : 0.04	
C : 0.84	G : 0.07	c : 0.04	A : 0.02	U : 0.01	
C : 0.69	U : 0.12	A : 0.07	G : 0.05	a : 0.01	c : 0.01	u : 0.01	
G : 0.79	U : 0.05	A : 0.05	g : 0.04	C : 0.04	
G : 0.95	g : 0.04	

#score	970.8571428571416
#seq	70
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_transcript_m1_run1.nuc.txt

#NT
UACUUUUUCUUUG	chr3:23852821-23853093(+)$1	272	254	267	19.7692
UUACUUUUCUUUG	chrX:122735455-122735716(-)$1	261	33	46	19.8653
UCUCUUUUCUUUU	chr2:38523701-38523955(-)$1	254	93	106	22.8461
UGUUUUUUCUUUU	chr5:65454506-65454786(+)$1	280	21	34	25.8269
UUUUUUUUUUUUU	chr11:85374452-85374735(-)$1	283	253	266	26.9807
uucuuuuuauuuc	chr4:74043158-74043442(-)$1	284	114	127	20.3461
UUUUUUUUUUUUU	chr6:64289848-64290072(+)$1	224	90	103	26.9807
UUUUGUUACUUUU	chr2:42510579-42510791(+)$1	212	29	42	20.5384
UUUUUUUUUUUUU	chr2:234178535-234178781(+)$1	246	89	102	26.9807
uuuuuuuuuuuuu	chr5:33453287-33453533(+)$1	246	81	94	26.9807
UCUCUUUUCUUUG	chr19:54972869-54973120(+)$1	251	48	61	20.7307
UUUUUUUUUUUUU	chr3:71107712-71107958(-)$1	246	187	200	26.9807
AUUUUUUUCUUUG	chr9:111826698-111826953(-)$1	255	82	95	23.0384
GUCUUUUUCUUUG	chr17:57915575-57915788(+)$1	213	45	58	19.2884
UUUUUUUUUUUUU	chr8:30567271-30567526(-)$1	255	85	98	26.9807
UCUUCUUUCUUUC	chr3:9475866-9476144(+)$1	278	8	21	20.0576
UUGCUUUUCUUUU	chr2:198284950-198285180(-)$1	230	121	134	22.1730
UCUUUUUCCUUUU	chr11:77327588-77327847(-)$1	259	172	185	21.5961
GUUUUCUUCUUUG	chr4:187124367-187124627(+)$1	260	95	108	18.5192
UUGUUUUUAUUUU	chrX:70766130-70766345(+)$1	215	9	22	22.3653
UGAUUUUUCUUUU	chr8:22269333-22269559(+)$1	226	58	71	21.9807
UUUUUUUUCUUUU	chr6:43151923-43152194(+)$1	271	67	80	29.1923
UUUUUUUUCUUCU	chr10:81053012-81053313(+)$1	301	84	97	24.4807
UUUUUUUUCCAUU	chr11:115069067-115069316(-)$1	249	78	91	20.0576
UUUUUUUUUUUUA	chr6:99848033-99848295(-)$1	262	248	261	24.9615
uuuucuuucuuuu	chr12:123779013-123779286(-)$1	273	46	59	25.0576
uuuuuuuuuuuuu	chr12:72004729-72004985(-)$1	256	86	99	26.9807
UCUUUUUUUUUUC	chrX:70767555-70767768(+)$1	213	119	132	21.9807
UUUUGUUACUUUU	chr2:42510591-42510843(+)$1	252	17	30	20.5384
ucuuuuuucuuuu	chr11:73429782-73430052(-)$1	270	54	67	26.2115
uuuuuuuuuuuuu	chr17:53374109-53374319(+)$1	210	89	102	26.9807
uuuuuuuuuuuuu	chr14:58740572-58740836(-)$1	264	82	95	26.9807
UCUCUUUUCUUUC	chr1:155701622-155701892(+)$1	270	97	110	20.8269
UUUUGGUUCUUUU	chr9:95015703-95015955(-)$1	252	84	97	20.6346
UUUUUUUUUUUUG	chr6:108242981-108243228(-)$1	247	91	104	24.8653
UUUCUUUUCUUUC	chr3:183889227-183889480(+)$1	253	77	90	23.8076
UUUUUUGUCUUGU	chr1:70697403-70697651(+)$1	248	96	109	19.9615
UGUUUUUUCUUUA	chr5:72195655-72195926(+)$1	271	87	100	23.8076
UUUUUCCUCUUUU	chr2:216257831-216258048(-)$1	217	56	69	20.1538
UUUCCUUUCUUUA	chr12:69667903-69668190(+)$1	287	108	121	19.6730
UUGUUUUUAUUUA	chr6:131191142-131191402(-)$1	260	80	93	20.3461
AUUUUUUUCUUUA	chrX:23802349-23802591(+)$1	242	30	43	23.1346
augUUUUUCUUUU	chr6:159030257-159030503(+)$1	246	85	98	21.5000
UCUUUUUUCCUUU	chr16:89851422-89851674(-)$1	252	86	99	21.7884
CUUUUUUUCCUUC	chr7:26230625-26230850(-)$1	225	14	27	18.6153
UUUGUUUUCUUUU	chr13:79892865-79893121(-)$1	256	86	99	25.3461
Cuuuuuuucuuuu	chr3:119156357-119156615(-)$1	258	219	232	25.0576
UUUUUUGUUUUUA	chr6:34741104-34741364(+)$1	260	27	40	20.4423
UUUAUGUUCUUUC	chrX:102940013-102940314(-)$1	301	89	102	18.8076
UUCUUUUUCUUUA	chr19:18493250-18493467(+)$1	217	52	65	23.5192
UGUGUUUUCUUUC	chr1:17740052-17740324(-)$1	272	91	104	19.9615

#otherMatches

#Struct PSSM
>>>>>bb22iiii	chr13:92002469-92002736(+)$1	267	84	97	22.4615
:::::::::::::	chr3:23852821-23853093(+)$1	272	254	267	19.7692
pppppppccc]a2	chrX:122735455-122735716(-)$1	261	33	46	19.8653
hhhhhvvvvvvvv	chr2:38523701-38523955(-)$1	254	93	106	22.8461
:::::::::::::	chr5:65454506-65454786(+)$1	280	21	34	25.8269
:::::::::::::	chr11:85374452-85374735(-)$1	283	253	266	26.9807
ccc++++++++++	chr4:74043158-74043442(-)$1	284	114	127	20.3461
^^^^^^^^^^^^^	chr6:64289848-64290072(+)$1	224	90	103	26.9807
:::::::::::::	chr2:42510579-42510791(+)$1	212	29	42	20.5384
=====::::::::	chr2:234178535-234178781(+)$1	246	89	102	26.9807
ee^^^^^^^^^^^	chr5:33453287-33453533(+)$1	246	81	94	26.9807
zzzzzzzzzzzdd	chr19:54972869-54973120(+)$1	251	48	61	20.7307
hhhhhh:::::::	chr3:71107712-71107958(-)$1	246	187	200	26.9807
:::::::ffffff	chr9:111826698-111826953(-)$1	255	82	95	23.0384
GGGG{DDDD:::c	chr17:57915575-57915788(+)$1	213	45	58	19.2884
d::::::::::::	chr8:30567271-30567526(-)$1	255	85	98	26.9807
:::::::::::::	chr3:9475866-9476144(+)$1	278	8	21	20.0576
:::::::::::::	chr2:198284950-198285180(-)$1	230	121	134	22.1730
wwwwdddd333ee	chr11:77327588-77327847(-)$1	259	172	185	21.5961
ddd[hhhhhhhhp	chr4:187124367-187124627(+)$1	260	95	108	18.5192
::CCC{DDDDFFF	chrX:70766130-70766345(+)$1	215	9	22	22.3653
pccc:::::::::	chr8:22269333-22269559(+)$1	226	58	71	21.9807
+++++++++++++	chr6:43151923-43152194(+)$1	271	67	80	29.1923
::::::::ddddp	chr10:81053012-81053313(+)$1	301	84	97	24.4807
:::::::::::::	chr11:115069067-115069316(-)$1	249	78	91	20.0576
mmdddd22eeeee	chr6:99848033-99848295(-)$1	262	248	261	24.9615
:::::::::::::	chr12:123779013-123779286(-)$1	273	46	59	25.0576
eee::::::::::	chr12:72004729-72004985(-)$1	256	86	99	26.9807
:::::::::::::	chrX:70767555-70767768(+)$1	213	119	132	21.9807
:::::::::::::	chr2:42510591-42510843(+)$1	252	17	30	20.5384
:::::::::::::	chr11:73429782-73430052(-)$1	270	54	67	26.2115
qqqqqqqqggggg	chr17:53374109-53374319(+)$1	210	89	102	26.9807
dd:::::::::::	chr14:58740572-58740836(-)$1	264	82	95	26.9807
::::IIIIIIIII	chr1:155701622-155701892(+)$1	270	97	110	20.8269
{BB{CCCUUUUUU	chr9:95015703-95015955(-)$1	252	84	97	20.6346
iiiiii[hhhhhh	chr6:108242981-108243228(-)$1	247	91	104	24.8653
^^^^^^^^^^^^^	chr3:183889227-183889480(+)$1	253	77	90	23.8076
::::::a[ggggg	chr1:70697403-70697651(+)$1	248	96	109	19.9615
ccc::::::::::	chr5:72195655-72195926(+)$1	271	87	100	23.8076
^^^^^^^^^^^^^	chr2:216257831-216258048(-)$1	217	56	69	20.1538
D?????EEEEEEE	chr12:69667903-69668190(+)$1	287	108	121	19.6730
:::::::::::::	chr6:131191142-131191402(-)$1	260	80	93	20.3461
c!!bbpppppppb	chrX:23802349-23802591(+)$1	242	30	43	23.1346
::dddd[cccrrr	chr6:159030257-159030503(+)$1	246	85	98	21.5000
:::::::ddddqq	chr16:89851422-89851674(-)$1	252	86	99	21.7884
c"""eeeeea^^^	chr7:26230625-26230850(-)$1	225	14	27	18.6153
vvvvvvvvvvvvv	chr13:79892865-79893121(-)$1	256	86	99	25.3461
:::::::::::::	chr3:119156357-119156615(-)$1	258	219	232	25.0576
[bbrrrrrrrrrb	chr6:34741104-34741364(+)$1	260	27	40	20.4423
22dddd22ggggg	chrX:102940013-102940314(-)$1	301	89	102	18.8076
(eeeeeooooooe	chr19:18493250-18493467(+)$1	217	52	65	23.5192
EEEE:::::::::	chr1:17740052-17740324(-)$1	272	91	104	19.9615

#DB
.....))..))))	chr13:92002469-92002736(+)$1	1	84	97	22.4615
.............	chr3:23852821-23853093(+)$1	1	254	267	19.7692
.......))).).	chrX:122735455-122735716(-)$1	1	33	46	19.8653
(((((........	chr2:38523701-38523955(-)$1	1	93	106	22.8461
.............	chr5:65454506-65454786(+)$1	1	21	34	25.8269
.............	chr11:85374452-85374735(-)$1	1	253	266	26.9807
(((..........	chr4:74043158-74043442(-)$1	1	114	127	20.3461
.............	chr6:64289848-64290072(+)$1	1	90	103	26.9807
.............	chr2:42510579-42510791(+)$1	1	29	42	20.5384
)))))........	chr2:234178535-234178781(+)$1	1	89	102	26.9807
((...........	chr5:33453287-33453533(+)$1	1	81	94	26.9807
...........))	chr19:54972869-54973120(+)$1	1	48	61	20.7307
)))))).......	chr3:71107712-71107958(-)$1	1	187	200	26.9807
.......((((((	chr9:111826698-111826953(-)$1	1	82	95	23.0384
((((.((((...(	chr17:57915575-57915788(+)$1	1	45	58	19.2884
)............	chr8:30567271-30567526(-)$1	1	85	98	26.9807
.............	chr3:9475866-9476144(+)$1	1	8	21	20.0576
.............	chr2:198284950-198285180(-)$1	1	121	134	22.1730
....))))...))	chr11:77327588-77327847(-)$1	1	172	185	21.5961
(((.((((((((.	chr4:187124367-187124627(+)$1	1	95	108	18.5192
..(((.(((((((	chrX:70766130-70766345(+)$1	1	9	22	22.3653
.))).........	chr8:22269333-22269559(+)$1	1	58	71	21.9807
.............	chr6:43151923-43152194(+)$1	1	67	80	29.1923
........((((.	chr10:81053012-81053313(+)$1	1	84	97	24.4807
.............	chr11:115069067-115069316(-)$1	1	78	91	20.0576
..))))..)))))	chr6:99848033-99848295(-)$1	1	248	261	24.9615
.............	chr12:123779013-123779286(-)$1	1	46	59	25.0576
)))..........	chr12:72004729-72004985(-)$1	1	86	99	26.9807
.............	chrX:70767555-70767768(+)$1	1	119	132	21.9807
.............	chr2:42510591-42510843(+)$1	1	17	30	20.5384
.............	chr11:73429782-73430052(-)$1	1	54	67	26.2115
........)))))	chr17:53374109-53374319(+)$1	1	89	102	26.9807
))...........	chr14:58740572-58740836(-)$1	1	82	95	26.9807
....)))))))))	chr1:155701622-155701892(+)$1	1	97	110	20.8269
.((.(((......	chr9:95015703-95015955(-)$1	1	84	97	20.6346
((((((.((((((	chr6:108242981-108243228(-)$1	1	91	104	24.8653
.............	chr3:183889227-183889480(+)$1	1	77	90	23.8076
......(.(((((	chr1:70697403-70697651(+)$1	1	96	109	19.9615
)))..........	chr5:72195655-72195926(+)$1	1	87	100	23.8076
.............	chr2:216257831-216258048(-)$1	1	56	69	20.1538
).....)))))))	chr12:69667903-69668190(+)$1	1	108	121	19.6730
.............	chr6:131191142-131191402(-)$1	1	80	93	20.3461
(..((.......)	chrX:23802349-23802591(+)$1	1	30	43	23.1346
..((((.(((...	chr6:159030257-159030503(+)$1	1	85	98	21.5000
.......((((..	chr16:89851422-89851674(-)$1	1	86	99	21.7884
(...((((((...	chr7:26230625-26230850(-)$1	1	14	27	18.6153
.............	chr13:79892865-79893121(-)$1	1	86	99	25.3461
.............	chr3:119156357-119156615(-)$1	1	219	232	25.0576
.((.........)	chr6:34741104-34741364(+)$1	1	27	40	20.4423
..))))..)))))	chrX:102940013-102940314(-)$1	1	89	102	18.8076
.(((((......)	chr19:18493250-18493467(+)$1	1	52	65	23.5192
)))).........	chr1:17740052-17740324(-)$1	1	91	104	19.9615

#PSSM
U : 0.73	u : 0.13	A : 0.03	G : 0.03	C : 0.03	a : 0.01	
U : 0.59	u : 0.15	C : 0.13	G : 0.07	A : 0.01	c : 0.01	
U : 0.67	u : 0.13	C : 0.05	G : 0.05	A : 0.03	c : 0.01	g : 0.01	
U : 0.65	u : 0.15	C : 0.13	G : 0.03	A : 0.01	
U : 0.75	u : 0.13	G : 0.05	C : 0.03	c : 0.01	
U : 0.76	u : 0.15	C : 0.03	G : 0.03	
U : 0.78	u : 0.15	G : 0.03	C : 0.01	
U : 0.78	u : 0.15	A : 0.03	C : 0.01	
C : 0.63	U : 0.17	u : 0.07	c : 0.05	A : 0.03	a : 0.01	
U : 0.78	u : 0.15	C : 0.05	
U : 0.80	u : 0.15	C : 0.01	A : 0.01	
U : 0.80	u : 0.15	C : 0.01	G : 0.01	
U : 0.42	A : 0.15	G : 0.13	u : 0.13	C : 0.13	c : 0.01	

#score	1188.9615384615379
#seq	52
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_UTR_m1_run1.nuc.txt

#NT
CCUUGC	chr17:41846566-41846810(-)$1	244	32	38	9.9402
CCUCGC	chrX:53262399-53262661(-)$1	262	127	133	9.8656
CUUGGC	chr1:154935563-154935850(-)$1	287	89	95	10.8358
CCUGGU	chr7:4804078-4804366(+)$1	288	85	91	10.7611
CCUGGC	chr1:230416050-230416263(+)$1	213	191	197	14.5671
CCUGUC	chr3:17201267-17201520(-)$1	253	20	26	10.6865
CCUGGC	chrX:149932950-149933233(+)$1	283	47	53	14.5671
CCUGCC	chr16:1495796-1496051(-)$1	255	136	142	11.0597
CCUGGU	chr12:57851150-57851391(+)$1	241	28	34	10.7611
cCUGGC	chr19:41247506-41247775(-)$1	269	221	227	14.5671
CCUGCC	chr19:17432947-17433229(+)$1	282	14	20	11.0597
CCUGGC	chr17:40466482-40466768(-)$1	286	17	23	14.5671
CGUGGC	chr19:541561-541845(+)$1	284	37	43	10.6865
CCUGAC	chr19:42702908-42703145(-)$1	237	151	157	10.5373
ccuggc	chr1:6581968-6582221(-)$1	253	178	184	14.5671
CCUGCC	chr17:79878505-79878740(-)$1	235	23	29	11.0597
CCUGGA	chr11:64845296-64845531(-)$1	235	21	27	10.6865
CCAGGC	chr17:37560960-37561215(-)$1	255	134	140	10.7611
CCUGGG	chr11:44641381-44641640(+)$1	259	228	234	10.8358
CCUGGC	chr2:70524010-70524293(-)$1	283	136	142	14.5671
CCUGGC	chr10:103867503-103867803(-)$1	300	141	147	14.5671
CCUGCC	chr11:67165584-67165827(-)$1	243	5	11	11.0597
CCUGGC	chr16:4932081-4932324(+)$1	243	117	123	14.5671
CCUGUC	chr19:19616617-19616864(+)$1	247	107	113	10.6865
CCUGGU	chr11:74552241-74552473(+)$1	232	62	68	10.7611
CGUGGC	chr17:60690564-60690807(+)$1	243	15	21	10.6865
CCAGGC	chr19:18554674-18554921(-)$1	247	68	74	10.7611
CCUGGA	chr1:15987241-15987518(+)$1	277	79	85	10.6865
CGUGGC	chr19:49843558-49843836(+)$1	278	156	162	10.6865
ccuggg	chr19:7966402-7966654(+)$1	252	165	171	10.8358
ccaggc	chr4:57326019-57326247(+)$1	228	78	84	10.7611
CCUGCC	chr6:33540743-33541011(-)$1	268	145	151	11.0597
CAUGGC	chr19:3535236-3535492(+)$1	256	47	53	10.4626
CCUUGC	chr2:219139618-219139842(-)$1	224	197	203	9.9402
CCUGGG	chr17:79525316-79525560(-)$1	244	194	200	10.8358
CCUGGC	chr19:50411048-50411283(-)$1	235	62	68	14.5671
CCUGGC	chr17:79687256-79687484(+)$1	228	11	17	14.5671
CCUGGC	chr1:31343926-31344153(-)$1	227	65	71	14.5671
CCUGCC	chr10:99520165-99520438(+)$1	273	30	36	11.0597
CCUGGC	chr20:30822861-30823107(+)$1	246	139	145	14.5671
CCUGGC	chr1:24128535-24128864(-)$1	329	48	54	14.5671
CCUGGC	chr19:3208341-3208601(+)$1	260	33	39	14.5671
CCAGGC	chr6:80411237-80411515(+)$1	278	193	199	10.7611
CCAGGC	chr19:33088579-33088823(-)$1	244	231	237	10.7611
CUUGGC	chr17:79687674-79688032(+)$1	358	186	192	10.8358
CUUGGC	chr20:33590391-33590660(-)$1	269	26	32	10.8358
CCUGGC	chr11:47493170-47493420(-)$1	250	185	191	14.5671
CCUGCC	chr19:811862-812104(+)$1	242	21	27	11.0597
CCUGGC	chr17:40351691-40351929(-)$1	238	152	158	14.5671
CCAGGC	chr17:33456866-33457109(-)$1	243	60	66	10.7611
CCUGGU	chr5:126889565-126889863(+)$1	298	4	10	10.7611
CCUGCC	chr11:47490959-47491227(-)$1	268	24	30	11.0597
CUUGGC	chr2:114715265-114715527(+)$1	262	251	257	10.8358
CCUGGG	chr18:2919402-2919654(-)$1	252	201	207	10.8358
CCAGGC	chr1:109853824-109854064(-)$1	240	120	126	10.7611
CCUGGG	chr16:24229495-24229759(+)$1	264	157	163	10.8358
CGUGGC	chr3:39137711-39137962(+)$1	251	19	25	10.6865
CCUGGA	chr16:23585067-23585337(+)$1	270	25	31	10.6865
CUUGGC	chr19:19223245-19223473(+)$1	228	18	24	10.8358
CCAGGC	chr15:45366335-45366643(+)$1	308	181	187	10.7611
CUUGGC	chr15:40845576-40845890(-)$1	314	6	12	10.8358
CCUGGC	chr22:43563659-43563913(-)$1	254	226	232	14.5671
CCUGGC	chr8:28610775-28611052(+)$1	277	68	74	14.5671
CCUGGC	chr19:747238-747502(+)$1	264	61	67	14.5671
ccuguc	chr1:38423046-38423290(-)$1	244	81	87	10.6865
CCUGGC	chr10:81913545-81913789(-)$1	244	145	151	14.5671

#otherMatches

#Struct PSSM
GGGccc	chr17:38246285-38246575(+)$1	290	212	218	14.5671
mmmhhh	chr17:41846566-41846810(-)$1	244	32	38	9.9402
::::ff	chrX:53262399-53262661(-)$1	262	127	133	9.8656
EEKKGG	chr1:154935563-154935850(-)$1	287	89	95	10.8358
d[bbpp	chr7:4804078-4804366(+)$1	288	85	91	10.7611
eeeemm	chr1:230416050-230416263(+)$1	213	191	197	14.5671
LLLCCC	chr3:17201267-17201520(-)$1	253	20	26	10.6865
DDEEEE	chrX:149932950-149933233(+)$1	283	47	53	14.5671
bb[bb[	chr16:1495796-1496051(-)$1	255	136	142	11.0597
iiiiio	chr12:57851150-57851391(+)$1	241	28	34	10.7611
gggggg	chr19:41247506-41247775(-)$1	269	221	227	14.5671
CKKEEE	chr19:17432947-17433229(+)$1	282	14	20	11.0597
JJJJJJ	chr17:40466482-40466768(-)$1	286	17	23	14.5671
oodddd	chr19:541561-541845(+)$1	284	37	43	10.6865
::dddd	chr19:42702908-42703145(-)$1	237	151	157	10.5373
ceeeee	chr1:6581968-6582221(-)$1	253	178	184	14.5671
!!cccb	chr17:79878505-79878740(-)$1	235	23	29	11.0597
cooooo	chr11:64845296-64845531(-)$1	235	21	27	10.6865
((====	chr17:37560960-37561215(-)$1	255	134	140	10.7611
BB:ddd	chr11:44641381-44641640(+)$1	259	228	234	10.8358
qeeeee	chr2:70524010-70524293(-)$1	283	136	142	14.5671
ccccpp	chr10:103867503-103867803(-)$1	300	141	147	14.5671
dddd[e	chr11:67165584-67165827(-)$1	243	5	11	11.0597
eeee:f	chr16:4932081-4932324(+)$1	243	117	123	14.5671
cc:ccc	chr19:19616617-19616864(+)$1	247	107	113	10.6865
eeeee"	chr11:74552241-74552473(+)$1	232	62	68	10.7611
ff:FFF	chr17:60690564-60690807(+)$1	243	15	21	10.6865
ff]ccc	chr19:18554674-18554921(-)$1	247	68	74	10.7611
eeeee:	chr1:15987241-15987518(+)$1	277	79	85	10.6865
:eeeee	chr19:49843558-49843836(+)$1	278	156	162	10.6865
ffEEEE	chr19:7966402-7966654(+)$1	252	165	171	10.8358
ggggg!	chr4:57326019-57326247(+)$1	228	78	84	10.7611
CC{BBA	chr6:33540743-33541011(-)$1	268	145	151	11.0597
pppccc	chr19:3535236-3535492(+)$1	256	47	53	10.4626
i55555	chr2:219139618-219139842(-)$1	224	197	203	9.9402
CCCCCC	chr17:79525316-79525560(-)$1	244	194	200	10.8358
iiiiii	chr19:50411048-50411283(-)$1	235	62	68	14.5671
oooccc	chr17:79687256-79687484(+)$1	228	11	17	14.5671
ggggg:	chr1:31343926-31344153(-)$1	227	65	71	14.5671
ccc[dd	chr10:99520165-99520438(+)$1	273	30	36	11.0597
cc]ddd	chr20:30822861-30823107(+)$1	246	139	145	14.5671
ddddqq	chr1:24128535-24128864(-)$1	329	48	54	14.5671
a!!fff	chr19:3208341-3208601(+)$1	260	33	39	14.5671
[a[aoo	chr6:80411237-80411515(+)$1	278	193	199	10.7611
BZZZDD	chr19:33088579-33088823(-)$1	244	231	237	10.7611
"""bbl	chr17:79687674-79688032(+)$1	358	186	192	10.8358
AKKCCC	chr20:33590391-33590660(-)$1	269	26	32	10.8358
fffff]	chr11:47493170-47493420(-)$1	250	185	191	14.5671
DD{FFF	chr19:811862-812104(+)$1	242	21	27	11.0597
!cccss	chr17:40351691-40351929(-)$1	238	152	158	14.5671
::ffff	chr17:33456866-33457109(-)$1	243	60	66	10.7611
CDDDDL	chr5:126889565-126889863(+)$1	298	4	10	10.7611
UUUEEE	chr11:47490959-47491227(-)$1	268	24	30	11.0597
fffffc	chr2:114715265-114715527(+)$1	262	251	257	10.8358
333ccc	chr18:2919402-2919654(-)$1	252	201	207	10.8358
DYYCCC	chr1:109853824-109854064(-)$1	240	120	126	10.7611
ddd333	chr16:24229495-24229759(+)$1	264	157	163	10.8358
f&&&&&	chr3:39137711-39137962(+)$1	251	19	25	10.6865
DFFFFF	chr16:23585067-23585337(+)$1	270	25	31	10.6865
::bb[a	chr19:19223245-19223473(+)$1	228	18	24	10.8358
mmmeee	chr15:45366335-45366643(+)$1	308	181	187	10.7611
c!!ddd	chr15:40845576-40845890(-)$1	314	6	12	10.8358
d]eeee	chr22:43563659-43563913(-)$1	254	226	232	14.5671
eeeenn	chr8:28610775-28611052(+)$1	277	68	74	14.5671
CCCC{G	chr19:747238-747502(+)$1	264	61	67	14.5671
llliii	chr1:38423046-38423290(-)$1	244	81	87	10.6865
DD}CCC	chr10:81913545-81913789(-)$1	244	145	151	14.5671

#DB
)))(((	chr17:38246285-38246575(+)$1	1	212	218	14.5671
...)))	chr17:41846566-41846810(-)$1	1	32	38	9.9402
....((	chrX:53262399-53262661(-)$1	1	127	133	9.8656
((..((	chr1:154935563-154935850(-)$1	1	89	95	10.8358
(.((..	chr7:4804078-4804366(+)$1	1	85	91	10.7611
((((..	chr1:230416050-230416263(+)$1	1	191	197	14.5671
...(((	chr3:17201267-17201520(-)$1	1	20	26	10.6865
((((((	chrX:149932950-149933233(+)$1	1	47	53	14.5671
((.((.	chr16:1495796-1496051(-)$1	1	136	142	11.0597
(((((.	chr12:57851150-57851391(+)$1	1	28	34	10.7611
))))))	chr19:41247506-41247775(-)$1	1	221	227	14.5671
(..(((	chr19:17432947-17433229(+)$1	1	14	20	11.0597
((((((	chr17:40466482-40466768(-)$1	1	17	23	14.5671
..))))	chr19:541561-541845(+)$1	1	37	43	10.6865
..((((	chr19:42702908-42703145(-)$1	1	151	157	10.5373
((((((	chr1:6581968-6582221(-)$1	1	178	184	14.5671
..((((	chr17:79878505-79878740(-)$1	1	23	29	11.0597
(.....	chr11:64845296-64845531(-)$1	1	21	27	10.6865
..((((	chr17:37560960-37561215(-)$1	1	134	140	10.7611
)).(((	chr11:44641381-44641640(+)$1	1	228	234	10.8358
.)))))	chr2:70524010-70524293(-)$1	1	136	142	14.5671
((((..	chr10:103867503-103867803(-)$1	1	141	147	14.5671
((((.(	chr11:67165584-67165827(-)$1	1	5	11	11.0597
)))).(	chr16:4932081-4932324(+)$1	1	117	123	14.5671
)).(((	chr19:19616617-19616864(+)$1	1	107	113	10.6865
(((((.	chr11:74552241-74552473(+)$1	1	62	68	10.7611
)).(((	chr17:60690564-60690807(+)$1	1	15	21	10.6865
)).)))	chr19:18554674-18554921(-)$1	1	68	74	10.7611
))))).	chr1:15987241-15987518(+)$1	1	79	85	10.6865
.(((((	chr19:49843558-49843836(+)$1	1	156	162	10.6865
))))))	chr19:7966402-7966654(+)$1	1	165	171	10.8358
(((((.	chr4:57326019-57326247(+)$1	1	78	84	10.7611
((.(((	chr6:33540743-33541011(-)$1	1	145	151	11.0597
...)))	chr19:3535236-3535492(+)$1	1	47	53	10.4626
).....	chr2:219139618-219139842(-)$1	1	197	203	9.9402
))))))	chr17:79525316-79525560(-)$1	1	194	200	10.8358
((((((	chr19:50411048-50411283(-)$1	1	62	68	14.5671
...)))	chr17:79687256-79687484(+)$1	1	11	17	14.5671
))))).	chr1:31343926-31344153(-)$1	1	65	71	14.5671
(((.((	chr10:99520165-99520438(+)$1	1	30	36	11.0597
)).)))	chr20:30822861-30823107(+)$1	1	139	145	14.5671
((((..	chr1:24128535-24128864(-)$1	1	48	54	14.5671
(..(((	chr19:3208341-3208601(+)$1	1	33	39	14.5671
.(.(..	chr6:80411237-80411515(+)$1	1	193	199	10.7611
)...))	chr19:33088579-33088823(-)$1	1	231	237	10.7611
...((.	chr17:79687674-79688032(+)$1	1	186	192	10.8358
(..(((	chr20:33590391-33590660(-)$1	1	26	32	10.8358
))))).	chr11:47493170-47493420(-)$1	1	185	191	14.5671
((.(((	chr19:811862-812104(+)$1	1	21	27	11.0597
.(((..	chr17:40351691-40351929(-)$1	1	152	158	14.5671
..((((	chr17:33456866-33457109(-)$1	1	60	66	10.7611
(((((.	chr5:126889565-126889863(+)$1	1	4	10	10.7611
...(((	chr11:47490959-47491227(-)$1	1	24	30	11.0597
))))))	chr2:114715265-114715527(+)$1	1	251	257	10.8358
...)))	chr18:2919402-2919654(-)$1	1	201	207	10.8358
)..)))	chr1:109853824-109854064(-)$1	1	120	126	10.7611
)))...	chr16:24229495-24229759(+)$1	1	157	163	10.8358
(.....	chr3:39137711-39137962(+)$1	1	19	25	10.6865
((((((	chr16:23585067-23585337(+)$1	1	25	31	10.6865
..((.(	chr19:19223245-19223473(+)$1	1	18	24	10.8358
...)))	chr15:45366335-45366643(+)$1	1	181	187	10.7611
(..(((	chr15:40845576-40845890(-)$1	1	6	12	10.8358
).))))	chr22:43563659-43563913(-)$1	1	226	232	14.5671
((((..	chr8:28610775-28611052(+)$1	1	68	74	14.5671
((((.(	chr19:747238-747502(+)$1	1	61	67	14.5671
...)))	chr1:38423046-38423290(-)$1	1	81	87	10.6865
)).)))	chr10:81913545-81913789(-)$1	1	145	151	14.5671

#PSSM
C : 0.92	c : 0.07	
C : 0.77	U : 0.08	G : 0.05	c : 0.05	A : 0.01	
U : 0.83	A : 0.10	u : 0.04	a : 0.01	
G : 0.89	g : 0.05	U : 0.02	C : 0.01	
G : 0.77	C : 0.11	g : 0.04	U : 0.02	A : 0.01	u : 0.01	
C : 0.77	U : 0.05	G : 0.05	c : 0.04	A : 0.04	g : 0.01	

#score	800.3283582089557
#seq	67
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_UTR_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
pppppppbb]ffffff]ccc999999999ccc333ffffff]bbbbbb[bbmmmmbbbb]bb:::GGGGGGG______FFFFFFYYDDDDHHHHHHHHhhhhhhhhddddpppppppdddd22hhhhhhhh::eeeee####ccc!!ccc!!ffffffbb[ggggggg[ccc[allla]ccc]ggggggg]bb7777777ffffff]ccc]ccceeeee::::::::::::::::::::::::::::::::::::::::::::HHHHHHHH@@@@@@	chr12:123997696-123998056(-)$1	360	62	339	831.0000

#DB
.......)).)))))).))).........)))...)))))).))((((.((....)))).))...)))))))......))))))..))))((((((((((((((((((((.......))))..))))))))..(((((....(((..(((..((((((((.(((((((.(((.(...).))).))))))).)).......)))))).))).))))))))............................................))))))))......	chr12:123997696-123998056(-)$1	1	62	339	831.0000

#PSSM
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	

#score	831.0
#seq	1
#width	277
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_transcript_m2_run1.nuc.txt

#NT
GCUUUUU	chr13:111372431-111372688(+)$1	257	177	184	12.9718
UCUUUUU	chr2:8868816-8869095(-)$1	279	200	207	17.1267
UCUUUUU	chr17:72205922-72206179(+)$1	257	193	200	17.1267
UCUCUUU	chr12:98936569-98936872(+)$1	303	134	141	12.8309
UCUUUUC	chr3:45722657-45722926(+)$1	269	109	116	13.1830
ucuuuuc	chr5:65239588-65239910(+)$1	322	44	51	13.1830
ucuuuuc	chr4:140626678-140627011(+)$1	333	36	43	13.1830
UAUUUUU	chr10:77625156-77625397(+)$1	241	137	144	13.8873
UAUUUUU	chr13:94727547-94727905(+)$1	358	116	123	13.8873
UCUUUUG	chr6:128777575-128777873(-)$1	298	112	119	12.9718
ucguuuu	chr12:124445058-124445362(-)$1	304	111	118	12.9718
uguuuuu	chrX:20246862-20247130(-)$1	268	91	98	13.7464
ucuuuuu	chr8:17006898-17007152(+)$1	254	98	105	17.1267
GCuuuuu	chr13:79946269-79946552(-)$1	283	110	117	12.9718
UCUUUUU	chr17:48829959-48830259(+)$1	300	83	90	17.1267
UUUUUUU	chr9:127472282-127472567(-)$1	285	7	14	13.5352
UAUUUUU	chr1:55536731-55537063(-)$1	332	23	30	13.8873
UCUUUUC	chr5:149823583-149823895(-)$1	312	220	227	13.1830
UCCUUUU	chr20:25280682-25280954(-)$1	272	103	110	13.2535
UCUAUUU	chr3:33429873-33430153(-)$1	280	47	54	12.8309
UCCUUUU	chr2:36606271-36606550(+)$1	279	2	9	13.2535
UCUUUUU	chr16:24836696-24836982(+)$1	286	120	127	17.1267
ucuuuuu	chr12:125006576-125006863(-)$1	287	274	281	17.1267
UCUCUUU	chr3:71587101-71587403(-)$1	302	148	155	12.8309
UAUUUUU	chr12:30867659-30867954(-)$1	295	199	206	13.8873
UCUUUUU	chr2:64229931-64230197(-)$1	266	153	160	17.1267
UCUUUGU	chr2:208395453-208395748(+)$1	295	65	72	12.4084
UAUUUUU	chr6:485883-486150(-)$1	267	105	112	13.8873
UCAUUUU	chr2:188395698-188395957(+)$1	259	25	32	13.2535
UCUUUUU	chr6:119584777-119585001(-)$1	224	80	87	17.1267
UGUUUUU	chr8:123832946-123833208(+)$1	262	219	226	13.7464
UGUUUUU	chr4:103717109-103717395(-)$1	286	264	271	13.7464
UCUAUUU	chr16:54317166-54317435(-)$1	269	175	182	12.8309
ucauuuu	chrX:73415704-73415971(-)$1	267	70	77	13.2535
UCUUUUA	chr6:111824675-111825002(+)$1	327	20	27	13.0422
UCUUUUA	chrX:73429415-73429658(-)$1	243	76	83	13.0422
CCUUUUU	chr2:118854380-118854627(+)$1	247	71	78	12.7605
ucuuuug	chr11:65202032-65202254(+)$1	222	29	36	12.9718
UCUUUUU	chr13:53206104-53206413(+)$1	309	24	31	17.1267
uccuuuu	chr11:70455901-70456162(-)$1	261	177	184	13.2535
UGUUUUU	chr2:216979782-216980044(+)$1	262	218	225	13.7464
UCUGUUU	chr9:96941662-96941921(+)$1	259	54	61	12.6901
GCUUUUU	chr1:23630556-23630833(-)$1	277	33	40	12.9718
ucuuuuu	chr2:159442441-159442726(+)$1	285	177	184	17.1267
UCUAUUU	chr8:30404950-30405251(+)$1	301	189	196	12.8309
ucuuuuu	chr14:37684489-37684780(+)$1	291	91	98	17.1267
ucauuuu	chr11:34341031-34341308(-)$1	277	112	119	13.2535
UGUUUUU	chr8:67590536-67590832(+)$1	296	7	14	13.7464
UCUUUUU	chr2:153508053-153508330(-)$1	277	204	211	17.1267
UAUUUUU	chr17:53372278-53372530(+)$1	252	81	88	13.8873
UCCUUUU	chrX:108971295-108971567(-)$1	272	119	126	13.2535
UCUUUUC	chr16:52577181-52577433(-)$1	252	48	55	13.1830
ucuuuuu	chr3:78866400-78866643(-)$1	243	215	222	17.1267
UUUUUUU	chr3:129369197-129369490(-)$1	293	25	32	13.5352
UCCUUUU	chr17:56080711-56080922(-)$1	211	79	86	13.2535
UCUCUUU	chr14:19890148-19890383(-)$1	235	41	48	12.8309
UUUUUUU	chr11:116884184-116884434(-)$1	250	11	18	13.5352
ucuuugu	chr11:70776002-70776276(-)$1	274	61	68	12.4084
UCAUUUU	chr7:158247631-158247887(-)$1	256	97	104	13.2535
gcuuuuu	chr14:37916214-37916517(+)$1	303	273	280	12.9718
UAUUUUU	chr20:391307-391563(+)$1	256	99	106	13.8873
UCUUUUU	chr7:135082892-135083155(-)$1	263	166	173	17.1267
UCUUUUU	chr12:11307724-11307983(-)$1	259	94	101	17.1267
ACUUUUU	chr6:117055839-117056101(+)$1	262	138	145	12.9014
UCUUUUU	chr2:63098342-63098623(+)$1	281	124	131	17.1267
acuuuuu	chr1:39727345-39727633(+)$1	288	58	65	12.9014
ACUUUUU	chr1:113632823-113633094(+)$1	271	147	154	12.9014
UCAUUUU	chr1:51239473-51239803(-)$1	330	67	74	13.2535
ucuuuua	chr13:114276494-114276874(+)$1	380	76	83	13.0422
uauuuuu	chr12:70209412-70209682(+)$1	270	259	266	13.8873

#otherMatches

#Struct PSSM
66ccc22	chr11:70891866-70892147(-)$1	281	99	106	13.7464
yyyyyyy	chr13:111372431-111372688(+)$1	257	177	184	12.9718
ddddlll	chr2:8868816-8869095(-)$1	279	200	207	17.1267
====:::	chr17:72205922-72206179(+)$1	257	193	200	17.1267
qqqqqqq	chr12:98936569-98936872(+)$1	303	134	141	12.8309
ccctttt	chr3:45722657-45722926(+)$1	269	109	116	13.1830
WWWWWWW	chr5:65239588-65239910(+)$1	322	44	51	13.1830
=======	chr4:140626678-140627011(+)$1	333	36	43	13.1830
#eeeeen	chr10:77625156-77625397(+)$1	241	137	144	13.8873
EEKKGGG	chr13:94727547-94727905(+)$1	358	116	123	13.8873
fbbpppp	chr6:128777575-128777873(-)$1	298	112	119	12.9718
J?????D	chr12:124445058-124445362(-)$1	304	111	118	12.9718
iii5555	chrX:20246862-20247130(-)$1	268	91	98	13.7464
:::::::	chr8:17006898-17007152(+)$1	254	98	105	17.1267
fffff::	chr13:79946269-79946552(-)$1	283	110	117	12.9718
DDDDLLL	chr17:48829959-48830259(+)$1	300	83	90	17.1267
=====ll	chr9:127472282-127472567(-)$1	285	7	14	13.5352
c[eeeee	chr1:55536731-55537063(-)$1	332	23	30	13.8873
bpppppp	chr5:149823583-149823895(-)$1	312	220	227	13.1830
F::::::	chr20:25280682-25280954(-)$1	272	103	110	13.2535
DDHHHHH	chr3:33429873-33430153(-)$1	280	47	54	12.8309
IIIIIII	chr2:36606271-36606550(+)$1	279	2	9	13.2535
ooooogg	chr16:24836696-24836982(+)$1	286	120	127	17.1267
]ccc:::	chr12:125006576-125006863(-)$1	287	274	281	17.1267
]ccc:gg	chr3:71587101-71587403(-)$1	302	148	155	12.8309
dddpppp	chr12:30867659-30867954(-)$1	295	199	206	13.8873
JZZZDDD	chr2:64229931-64230197(-)$1	266	153	160	17.1267
c%%%%%%	chr2:208395453-208395748(+)$1	295	65	72	12.4084
:::::::	chr6:485883-486150(-)$1	267	105	112	13.8873
d22gggg	chr2:188395698-188395957(+)$1	259	25	32	13.2535
ldddd]b	chr6:119584777-119585001(-)$1	224	80	87	17.1267
=======	chr8:123832946-123833208(+)$1	262	219	226	13.7464
dd]iiii	chr4:103717109-103717395(-)$1	286	264	271	13.7464
d55555e	chr16:54317166-54317435(-)$1	269	175	182	12.8309
f&&&&&&	chrX:73415704-73415971(-)$1	267	70	77	13.2535
GGGGG::	chr6:111824675-111825002(+)$1	327	20	27	13.0422
ffffffl	chrX:73429415-73429658(-)$1	243	76	83	13.0422
:eeeeel	chr2:118854380-118854627(+)$1	247	71	78	12.7605
ccmmmmc	chr11:65202032-65202254(+)$1	222	29	36	12.9718
oooooff	chr13:53206104-53206413(+)$1	309	24	31	17.1267
ccc::::	chr11:70455901-70456162(-)$1	261	177	184	13.2535
______G	chr2:216979782-216980044(+)$1	262	218	225	13.7464
qeeeee2	chr9:96941662-96941921(+)$1	259	54	61	12.6901
hhhhhhh	chr1:23630556-23630833(-)$1	277	33	40	12.9718
c::::::	chr2:159442441-159442726(+)$1	285	177	184	17.1267
eeeeenn	chr8:30404950-30405251(+)$1	301	189	196	12.8309
KKIIIII	chr14:37684489-37684780(+)$1	291	91	98	17.1267
ggggiii	chr11:34341031-34341308(-)$1	277	112	119	13.2535
iiii!!c	chr8:67590536-67590832(+)$1	296	7	14	13.7464
((ddddd	chr2:153508053-153508330(-)$1	277	204	211	17.1267
HHHHHHH	chr17:53372278-53372530(+)$1	252	81	88	13.8873
==####e	chrX:108971295-108971567(-)$1	272	119	126	13.2535
pppbb22	chr16:52577181-52577433(-)$1	252	48	55	13.1830
DDDDYYG	chr3:78866400-78866643(-)$1	243	215	222	17.1267
EEEELLL	chr3:129369197-129369490(-)$1	293	25	32	13.5352
yyyyyyy	chr17:56080711-56080922(-)$1	211	79	86	13.2535
eeeee22	chr14:19890148-19890383(-)$1	235	41	48	12.8309
FFFF:::	chr11:116884184-116884434(-)$1	250	11	18	13.5352
[ffffff	chr11:70776002-70776276(-)$1	274	61	68	12.4084
gggggg]	chr7:158247631-158247887(-)$1	256	97	104	13.2535
CC}GGGG	chr14:37916214-37916517(+)$1	303	273	280	12.9718
c22bb]d	chr20:391307-391563(+)$1	256	99	106	13.8873
bb]dddd	chr7:135082892-135083155(-)$1	263	166	173	17.1267
}CCC~~~	chr12:11307724-11307983(-)$1	259	94	101	17.1267
JJJJJJJ	chr6:117055839-117056101(+)$1	262	138	145	12.9014
ccttttt	chr2:63098342-63098623(+)$1	281	124	131	17.1267
:::::::	chr1:39727345-39727633(+)$1	288	58	65	12.9014
uuuuuuu	chr1:113632823-113633094(+)$1	271	147	154	12.9014
JJJJJJJ	chr1:51239473-51239803(-)$1	330	67	74	13.2535
:::::::	chr13:114276494-114276874(+)$1	380	76	83	13.0422
:::::::	chr12:70209412-70209682(+)$1	270	259	266	13.8873

#DB
..)))..	chr11:70891866-70892147(-)$1	1	99	106	13.7464
.......	chr13:111372431-111372688(+)$1	1	177	184	12.9718
((((...	chr2:8868816-8869095(-)$1	1	200	207	17.1267
))))...	chr17:72205922-72206179(+)$1	1	193	200	17.1267
.......	chr12:98936569-98936872(+)$1	1	134	141	12.8309
(((....	chr3:45722657-45722926(+)$1	1	109	116	13.1830
.......	chr5:65239588-65239910(+)$1	1	44	51	13.1830
)))))))	chr4:140626678-140627011(+)$1	1	36	43	13.1830
.(((((.	chr10:77625156-77625397(+)$1	1	137	144	13.8873
((..(((	chr13:94727547-94727905(+)$1	1	116	123	13.8873
(((....	chr6:128777575-128777873(-)$1	1	112	119	12.9718
).....)	chr12:124445058-124445362(-)$1	1	111	118	12.9718
)))....	chrX:20246862-20247130(-)$1	1	91	98	13.7464
.......	chr8:17006898-17007152(+)$1	1	98	105	17.1267
)))))..	chr13:79946269-79946552(-)$1	1	110	117	12.9718
((((...	chr17:48829959-48830259(+)$1	1	83	90	17.1267
(((((..	chr9:127472282-127472567(-)$1	1	7	14	13.5352
(.(((((	chr1:55536731-55537063(-)$1	1	23	30	13.8873
(......	chr5:149823583-149823895(-)$1	1	220	227	13.1830
(......	chr20:25280682-25280954(-)$1	1	103	110	13.2535
(((((((	chr3:33429873-33430153(-)$1	1	47	54	12.8309
(((((((	chr2:36606271-36606550(+)$1	1	2	9	13.2535
.....))	chr16:24836696-24836982(+)$1	1	120	127	17.1267
.)))...	chr12:125006576-125006863(-)$1	1	274	281	17.1267
.))).((	chr3:71587101-71587403(-)$1	1	148	155	12.8309
(((....	chr12:30867659-30867954(-)$1	1	199	206	13.8873
)...)))	chr2:64229931-64230197(-)$1	1	153	160	17.1267
(......	chr2:208395453-208395748(+)$1	1	65	72	12.4084
.......	chr6:485883-486150(-)$1	1	105	112	13.8873
)..))))	chr2:188395698-188395957(+)$1	1	25	32	13.2535
.)))).)	chr6:119584777-119585001(-)$1	1	80	87	17.1267
(((((((	chr8:123832946-123833208(+)$1	1	219	226	13.7464
)).))))	chr4:103717109-103717395(-)$1	1	264	271	13.7464
).....)	chr16:54317166-54317435(-)$1	1	175	182	12.8309
(......	chrX:73415704-73415971(-)$1	1	70	77	13.2535
(((((..	chr6:111824675-111825002(+)$1	1	20	27	13.0422
((((((.	chrX:73429415-73429658(-)$1	1	76	83	13.0422
.(((((.	chr2:118854380-118854627(+)$1	1	71	78	12.7605
((....)	chr11:65202032-65202254(+)$1	1	29	36	12.9718
.....))	chr13:53206104-53206413(+)$1	1	24	31	17.1267
)))....	chr11:70455901-70456162(-)$1	1	177	184	13.2535
......)	chr2:216979782-216980044(+)$1	1	218	225	13.7464
.))))).	chr9:96941662-96941921(+)$1	1	54	61	12.6901
(((((((	chr1:23630556-23630833(-)$1	1	33	40	12.9718
)......	chr2:159442441-159442726(+)$1	1	177	184	17.1267
(((((..	chr8:30404950-30405251(+)$1	1	189	196	12.8309
..(((((	chr14:37684489-37684780(+)$1	1	91	98	17.1267
))))(((	chr11:34341031-34341308(-)$1	1	112	119	13.2535
((((..(	chr8:67590536-67590832(+)$1	1	7	14	13.7464
..(((((	chr2:153508053-153508330(-)$1	1	204	211	17.1267
(((((((	chr17:53372278-53372530(+)$1	1	81	88	13.8873
((....(	chrX:108971295-108971567(-)$1	1	119	126	13.2535
...))..	chr16:52577181-52577433(-)$1	1	48	55	13.1830
))))..)	chr3:78866400-78866643(-)$1	1	215	222	17.1267
((((...	chr3:129369197-129369490(-)$1	1	25	32	13.5352
.......	chr17:56080711-56080922(-)$1	1	79	86	13.2535
)))))..	chr14:19890148-19890383(-)$1	1	41	48	12.8309
((((...	chr11:116884184-116884434(-)$1	1	11	18	13.5352
.((((((	chr11:70776002-70776276(-)$1	1	61	68	12.4084
)))))).	chr7:158247631-158247887(-)$1	1	97	104	13.2535
)).))))	chr14:37916214-37916517(+)$1	1	273	280	12.9718
)..)).)	chr20:391307-391563(+)$1	1	99	106	13.8873
)).))))	chr7:135082892-135083155(-)$1	1	166	173	17.1267
.)))...	chr12:11307724-11307983(-)$1	1	94	101	17.1267
)))))))	chr6:117055839-117056101(+)$1	1	138	145	12.9014
((.....	chr2:63098342-63098623(+)$1	1	124	131	17.1267
.......	chr1:39727345-39727633(+)$1	1	58	65	12.9014
.......	chr1:113632823-113633094(+)$1	1	147	154	12.9014
(((((((	chr1:51239473-51239803(-)$1	1	67	74	13.2535
.......	chr13:114276494-114276874(+)$1	1	76	83	13.0422
.......	chr12:70209412-70209682(+)$1	1	259	266	13.8873

#PSSM
U : 0.66	u : 0.22	G : 0.04	A : 0.02	C : 0.01	g : 0.01	a : 0.01	
C : 0.53	c : 0.22	A : 0.09	G : 0.07	U : 0.04	g : 0.01	a : 0.01	
U : 0.63	u : 0.21	C : 0.05	A : 0.04	a : 0.02	g : 0.01	c : 0.01	
U : 0.63	u : 0.26	C : 0.04	A : 0.04	G : 0.01	
U : 0.73	u : 0.26	
U : 0.71	u : 0.25	G : 0.01	g : 0.01	
U : 0.64	u : 0.21	C : 0.04	c : 0.02	A : 0.02	G : 0.01	g : 0.01	a : 0.01	

#score	1002.5492957746474
#seq	71
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_CDS_m2_run1.nuc.txt

#NT
AAGU	chr2:216296558-216296782(-)$1	224	11	15	12.0000
AAGU	chr1:116935478-116935706(+)$1	228	36	40	12.0000
AAGU	chr2:21236210-21236472(-)$1	262	194	198	12.0000
AAGU	chr4:74277612-74277827(+)$1	215	147	151	12.0000
AAGU	chr2:21246382-21246621(-)$1	239	214	218	12.0000
AAGU	chr2:21234424-21234647(-)$1	223	40	44	12.0000
AAGU	chr5:179132596-179132863(+)$1	267	33	37	12.0000
AAGU	chr12:9229307-9229536(-)$1	229	146	150	12.0000
AAGU	chr4:74276015-74276222(+)$1	207	64	68	12.0000
AAGU	chr2:21233873-21234156(-)$1	283	266	270	12.0000
AAGU	chr4:74272245-74272447(+)$1	202	59	63	12.0000
AAGU	chr5:180670238-180670479(-)$1	241	224	228	12.0000
AAGU	chr2:21245776-21246010(-)$1	234	54	58	12.0000
AAGU	chr12:9245960-9246179(-)$1	219	75	79	12.0000
AAGU	chr2:216230190-216230443(-)$1	253	131	135	12.0000
AAGU	chr2:216295339-216295591(-)$1	252	21	25	12.0000
AAGU	chr2:21236049-21236320(-)$1	271	42	46	12.0000
AAGU	chr4:74309035-74309245(+)$1	210	128	132	12.0000
AAGU	chr2:216279463-216279692(-)$1	229	15	19	12.0000
AAGU	chr7:94293333-94293600(+)$1	267	207	211	12.0000
AAGU	chr4:74277660-74277879(+)$1	219	99	103	12.0000
AAGU	chr2:21246359-21246582(-)$1	223	175	179	12.0000
AAGU	chr2:216292953-216293158(-)$1	205	33	37	12.0000
AAGU	chrX:132887590-132887810(-)$1	220	8	12	12.0000
AAGU	chr4:74272257-74272490(+)$1	233	47	51	12.0000
AAGU	chr3:133467184-133467437(+)$1	253	136	140	12.0000
AAGU	chr4:74309045-74309261(+)$1	216	118	122	12.0000
AAGU	chr2:21252524-21252757(-)$1	233	148	152	12.0000
AAGU	chr2:216286861-216287066(-)$1	205	71	75	12.0000
AAGU	chr1:116940490-116940761(+)$1	271	92	96	12.0000
AAGU	chr2:21245607-21245816(-)$1	209	64	68	12.0000
AAGU	chr4:74277722-74277929(+)$1	207	37	41	12.0000
AAGU	chr2:216230127-216230341(-)$1	214	29	33	12.0000
AAGU	chr4:74279121-74279348(+)$1	227	27	31	12.0000
AAGU	chr4:74277738-74277942(+)$1	204	21	25	12.0000
AAGU	chr2:21228763-21229010(-)$1	247	82	86	12.0000
AAGU	chr1:8925406-8925641(-)$1	235	45	49	12.0000
AAGU	chr2:216242811-216243042(-)$1	231	73	77	12.0000
AAGU	chr2:216232602-216232811(-)$1	209	197	201	12.0000
AAGU	chr3:133467237-133467499(+)$1	262	83	87	12.0000
AAGU	chr2:216256263-216256497(-)$1	234	141	145	12.0000
AAGU	chr4:74283805-74284025(+)$1	220	49	53	12.0000
AAGU	chr2:216288073-216288306(-)$1	233	170	174	12.0000
AAGU	chr2:21259967-21260225(-)$1	258	39	43	12.0000
AAGU	chr2:216259273-216259516(-)$1	243	137	141	12.0000
AAGU	chr2:216295453-216295665(-)$1	212	95	99	12.0000
AAGU	chr4:74283198-74283424(+)$1	226	72	76	12.0000
AAGU	chr2:216300300-216300522(-)$1	222	205	209	12.0000
AAGU	chr2:216246892-216247136(-)$1	244	233	237	12.0000
AAGU	chr2:21250700-21250949(-)$1	249	19	23	12.0000
AAGU	chr2:21228190-21228412(-)$1	222	50	54	12.0000
AAGU	chr4:74270787-74270990(+)$1	203	105	109	12.0000
AAGU	chr4:74275941-74276158(+)$1	217	138	142	12.0000
AAGU	chr12:9251956-9252205(-)$1	249	118	122	12.0000
AAGU	chr19:6682120-6682340(-)$1	220	4	8	12.0000
AAGU	chr5:180670222-180670425(-)$1	203	170	174	12.0000
AAGU	chr10:7765402-7765609(+)$1	207	126	130	12.0000
AAGU	chr4:74283705-74283920(+)$1	215	149	153	12.0000
AAGU	chr2:216232626-216232842(-)$1	216	0	4	12.0000
aaGU	chr12:9248148-9248373(-)$1	225	33	37	12.0000
AAGU	chr3:133482925-133483176(+)$1	251	40	44	12.0000
AAGU	chr2:216245662-216245879(-)$1	217	157	161	12.0000
AAGU	chr2:21228149-21228365(-)$1	216	3	7	12.0000
AAGU	chr2:216248668-216248943(-)$1	275	77	81	12.0000
AAGU	chr4:74275000-74275226(+)$1	226	41	45	12.0000
AAGU	chr2:21228371-21228623(-)$1	252	54	58	12.0000
AAGU	chr2:216248012-216248246(-)$1	234	64	68	12.0000
AAGU	chr2:216279459-216279663(-)$1	204	0	4	12.0000
AAGU	chr17:1678360-1678590(+)$1	230	5	9	12.0000
AAGU	chr2:216288106-216288330(-)$1	224	194	198	12.0000
AAGU	chr2:21234210-21234439(-)$1	229	31	35	12.0000
AAGU	chr2:216248743-216248959(-)$1	216	4	8	12.0000
AAGU	chr2:21234974-21235227(-)$1	253	140	144	12.0000
AAGU	chr2:216269195-216269443(-)$1	248	226	230	12.0000
AAGU	chr4:74314961-74315207(+)$1	246	26	30	12.0000
AAGU	chr7:103214472-103214715(-)$1	243	182	186	12.0000
AAGU	chr2:21234596-21234838(-)$1	242	79	83	12.0000
AAGU	chr5:180670226-180670438(-)$1	212	183	187	12.0000
AAGU	chr12:9253954-9254188(-)$1	234	202	206	12.0000
AAGU	chr4:155527772-155528113(-)$1	341	22	26	12.0000

#otherMatches

#Struct PSSM
qqqq	chr2:216259150-216259378(-)$1	228	96	100	12.0000
::CC	chr2:216296558-216296782(-)$1	224	11	15	12.0000
neee	chr1:116935478-116935706(+)$1	228	36	40	12.0000
FFF}	chr2:21236210-21236472(-)$1	262	194	198	12.0000
hhhh	chr4:74277612-74277827(+)$1	215	147	151	12.0000
oooo	chr2:21246382-21246621(-)$1	239	214	218	12.0000
GGGG	chr2:21234424-21234647(-)$1	223	40	44	12.0000
ggg)	chr5:179132596-179132863(+)$1	267	33	37	12.0000
dddd	chr12:9229307-9229536(-)$1	229	146	150	12.0000
FFFF	chr4:74276015-74276222(+)$1	207	64	68	12.0000
::::	chr2:21233873-21234156(-)$1	283	266	270	12.0000
:ccc	chr4:74272245-74272447(+)$1	202	59	63	12.0000
22a]	chr5:180670238-180670479(-)$1	241	224	228	12.0000
EEEE	chr2:21245776-21246010(-)$1	234	54	58	12.0000
mmdd	chr12:9245960-9246179(-)$1	219	75	79	12.0000
CC}F	chr2:216230190-216230443(-)$1	253	131	135	12.0000
!bbm	chr2:216295339-216295591(-)$1	252	21	25	12.0000
::a[	chr2:21236049-21236320(-)$1	271	42	46	12.0000
!eee	chr4:74309035-74309245(+)$1	210	128	132	12.0000
HHHC	chr2:216279463-216279692(-)$1	229	15	19	12.0000
:EEE	chr7:94293333-94293600(+)$1	267	207	211	12.0000
hhhh	chr4:74277660-74277879(+)$1	219	99	103	12.0000
oooo	chr2:21246359-21246582(-)$1	223	175	179	12.0000
d]ee	chr2:216292953-216293158(-)$1	205	33	37	12.0000
:eee	chrX:132887590-132887810(-)$1	220	8	12	12.0000
:ccc	chr4:74272257-74272490(+)$1	233	47	51	12.0000
&&&c	chr3:133467184-133467437(+)$1	253	136	140	12.0000
!eee	chr4:74309045-74309261(+)$1	216	118	122	12.0000
qqqq	chr2:21252524-21252757(-)$1	233	148	152	12.0000
::ee	chr2:216286861-216287066(-)$1	205	71	75	12.0000
!ccc	chr1:116940490-116940761(+)$1	271	92	96	12.0000
cooo	chr2:21245607-21245816(-)$1	209	64	68	12.0000
hhhh	chr4:74277722-74277929(+)$1	207	37	41	12.0000
wwdd	chr2:216230127-216230341(-)$1	214	29	33	12.0000
{FFF	chr4:74279121-74279348(+)$1	227	27	31	12.0000
:FFF	chr4:74277738-74277942(+)$1	204	21	25	12.0000
ffff	chr2:21228763-21229010(-)$1	247	82	86	12.0000
ffll	chr1:8925406-8925641(-)$1	235	45	49	12.0000
sscc	chr2:216242811-216243042(-)$1	231	73	77	12.0000
:BB}	chr2:216232602-216232811(-)$1	209	197	201	12.0000
::BB	chr3:133467237-133467499(+)$1	262	83	87	12.0000
$ddd	chr2:216256263-216256497(-)$1	234	141	145	12.0000
::ee	chr4:74283805-74284025(+)$1	220	49	53	12.0000
IIII	chr2:216288073-216288306(-)$1	233	170	174	12.0000
LCCC	chr2:21259967-21260225(-)$1	258	39	43	12.0000
gggg	chr2:216259273-216259516(-)$1	243	137	141	12.0000
!bbm	chr2:216295453-216295665(-)$1	212	95	99	12.0000
yyyy	chr4:74283198-74283424(+)$1	226	72	76	12.0000
ZZAJ	chr2:216300300-216300522(-)$1	222	205	209	12.0000
FFFF	chr2:216246892-216247136(-)$1	244	233	237	12.0000
MMDD	chr2:21250700-21250949(-)$1	249	19	23	12.0000
!!ee	chr2:21228190-21228412(-)$1	222	50	54	12.0000
::CC	chr4:74270787-74270990(+)$1	203	105	109	12.0000
CCC{	chr4:74275941-74276158(+)$1	217	138	142	12.0000
LLHH	chr12:9251956-9252205(-)$1	249	118	122	12.0000
LLHH	chr19:6682120-6682340(-)$1	220	4	8	12.0000
22a]	chr5:180670222-180670425(-)$1	203	170	174	12.0000
:::H	chr10:7765402-7765609(+)$1	207	126	130	12.0000
::ee	chr4:74283705-74283920(+)$1	215	149	153	12.0000
::DD	chr2:216232626-216232842(-)$1	216	0	4	12.0000
fff"	chr12:9248148-9248373(-)$1	225	33	37	12.0000
fff[	chr3:133482925-133483176(+)$1	251	40	44	12.0000
333=	chr2:216245662-216245879(-)$1	217	157	161	12.0000
!!ee	chr2:21228149-21228365(-)$1	216	3	7	12.0000
[ccc	chr2:216248668-216248943(-)$1	275	77	81	12.0000
hhhh	chr4:74275000-74275226(+)$1	226	41	45	12.0000
:===	chr2:21228371-21228623(-)$1	252	54	58	12.0000
::gg	chr2:216248012-216248246(-)$1	234	64	68	12.0000
::::	chr2:216279459-216279663(-)$1	204	0	4	12.0000
:::C	chr17:1678360-1678590(+)$1	230	5	9	12.0000
IIII	chr2:216288106-216288330(-)$1	224	194	198	12.0000
hhhh	chr2:21234210-21234439(-)$1	229	31	35	12.0000
::ff	chr2:216248743-216248959(-)$1	216	4	8	12.0000
hhhh	chr2:21234974-21235227(-)$1	253	140	144	12.0000
bbb]	chr2:216269195-216269443(-)$1	248	226	230	12.0000
QQQQ	chr4:74314961-74315207(+)$1	246	26	30	12.0000
oooo	chr7:103214472-103214715(-)$1	243	182	186	12.0000
lccc	chr2:21234596-21234838(-)$1	242	79	83	12.0000
22a]	chr5:180670226-180670438(-)$1	212	183	187	12.0000
@@@@	chr12:9253954-9254188(-)$1	234	202	206	12.0000
b]bb	chr4:155527772-155528113(-)$1	341	22	26	12.0000

#DB
....	chr2:216259150-216259378(-)$1	1	96	100	12.0000
..((	chr2:216296558-216296782(-)$1	1	11	15	12.0000
.)))	chr1:116935478-116935706(+)$1	1	36	40	12.0000
))).	chr2:21236210-21236472(-)$1	1	194	198	12.0000
))))	chr4:74277612-74277827(+)$1	1	147	151	12.0000
....	chr2:21246382-21246621(-)$1	1	214	218	12.0000
((((	chr2:21234424-21234647(-)$1	1	40	44	12.0000
(((.	chr5:179132596-179132863(+)$1	1	33	37	12.0000
((((	chr12:9229307-9229536(-)$1	1	146	150	12.0000
((((	chr4:74276015-74276222(+)$1	1	64	68	12.0000
....	chr2:21233873-21234156(-)$1	1	266	270	12.0000
.(((	chr4:74272245-74272447(+)$1	1	59	63	12.0000
..).	chr5:180670238-180670479(-)$1	1	224	228	12.0000
((((	chr2:21245776-21246010(-)$1	1	54	58	12.0000
..))	chr12:9245960-9246179(-)$1	1	75	79	12.0000
)).)	chr2:216230190-216230443(-)$1	1	131	135	12.0000
.((.	chr2:216295339-216295591(-)$1	1	21	25	12.0000
..(.	chr2:21236049-21236320(-)$1	1	42	46	12.0000
.(((	chr4:74309035-74309245(+)$1	1	128	132	12.0000
((((	chr2:216279463-216279692(-)$1	1	15	19	12.0000
.)))	chr7:94293333-94293600(+)$1	1	207	211	12.0000
))))	chr4:74277660-74277879(+)$1	1	99	103	12.0000
....	chr2:21246359-21246582(-)$1	1	175	179	12.0000
).))	chr2:216292953-216293158(-)$1	1	33	37	12.0000
.(((	chrX:132887590-132887810(-)$1	1	8	12	12.0000
.(((	chr4:74272257-74272490(+)$1	1	47	51	12.0000
...(	chr3:133467184-133467437(+)$1	1	136	140	12.0000
.(((	chr4:74309045-74309261(+)$1	1	118	122	12.0000
....	chr2:21252524-21252757(-)$1	1	148	152	12.0000
..((	chr2:216286861-216287066(-)$1	1	71	75	12.0000
.(((	chr1:116940490-116940761(+)$1	1	92	96	12.0000
(...	chr2:21245607-21245816(-)$1	1	64	68	12.0000
))))	chr4:74277722-74277929(+)$1	1	37	41	12.0000
..))	chr2:216230127-216230341(-)$1	1	29	33	12.0000
.(((	chr4:74279121-74279348(+)$1	1	27	31	12.0000
.(((	chr4:74277738-74277942(+)$1	1	21	25	12.0000
((((	chr2:21228763-21229010(-)$1	1	82	86	12.0000
((..	chr1:8925406-8925641(-)$1	1	45	49	12.0000
..))	chr2:216242811-216243042(-)$1	1	73	77	12.0000
.)).	chr2:216232602-216232811(-)$1	1	197	201	12.0000
..((	chr3:133467237-133467499(+)$1	1	83	87	12.0000
.(((	chr2:216256263-216256497(-)$1	1	141	145	12.0000
..((	chr4:74283805-74284025(+)$1	1	49	53	12.0000
))))	chr2:216288073-216288306(-)$1	1	170	174	12.0000
.(((	chr2:21259967-21260225(-)$1	1	39	43	12.0000
((((	chr2:216259273-216259516(-)$1	1	137	141	12.0000
.((.	chr2:216295453-216295665(-)$1	1	95	99	12.0000
....	chr4:74283198-74283424(+)$1	1	72	76	12.0000
..))	chr2:216300300-216300522(-)$1	1	205	209	12.0000
))))	chr2:216246892-216247136(-)$1	1	233	237	12.0000
..((	chr2:21250700-21250949(-)$1	1	19	23	12.0000
..((	chr2:21228190-21228412(-)$1	1	50	54	12.0000
..))	chr4:74270787-74270990(+)$1	1	105	109	12.0000
(((.	chr4:74275941-74276158(+)$1	1	138	142	12.0000
..((	chr12:9251956-9252205(-)$1	1	118	122	12.0000
..((	chr19:6682120-6682340(-)$1	1	4	8	12.0000
..).	chr5:180670222-180670425(-)$1	1	170	174	12.0000
...)	chr10:7765402-7765609(+)$1	1	126	130	12.0000
..((	chr4:74283705-74283920(+)$1	1	149	153	12.0000
..((	chr2:216232626-216232842(-)$1	1	0	4	12.0000
(((.	chr12:9248148-9248373(-)$1	1	33	37	12.0000
(((.	chr3:133482925-133483176(+)$1	1	40	44	12.0000
...)	chr2:216245662-216245879(-)$1	1	157	161	12.0000
..((	chr2:21228149-21228365(-)$1	1	3	7	12.0000
.(((	chr2:216248668-216248943(-)$1	1	77	81	12.0000
((((	chr4:74275000-74275226(+)$1	1	41	45	12.0000
.(((	chr2:21228371-21228623(-)$1	1	54	58	12.0000
..((	chr2:216248012-216248246(-)$1	1	64	68	12.0000
....	chr2:216279459-216279663(-)$1	1	0	4	12.0000
...(	chr17:1678360-1678590(+)$1	1	5	9	12.0000
))))	chr2:216288106-216288330(-)$1	1	194	198	12.0000
))))	chr2:21234210-21234439(-)$1	1	31	35	12.0000
..((	chr2:216248743-216248959(-)$1	1	4	8	12.0000
((((	chr2:21234974-21235227(-)$1	1	140	144	12.0000
))).	chr2:216269195-216269443(-)$1	1	226	230	12.0000
....	chr4:74314961-74315207(+)$1	1	26	30	12.0000
....	chr7:103214472-103214715(-)$1	1	182	186	12.0000
.)))	chr2:21234596-21234838(-)$1	1	79	83	12.0000
..).	chr5:180670226-180670438(-)$1	1	183	187	12.0000
....	chr12:9253954-9254188(-)$1	1	202	206	12.0000
).))	chr4:155527772-155528113(-)$1	1	22	26	12.0000

#PSSM
A : 0.98	a : 0.01	
A : 0.98	a : 0.01	
G : 1.00	
U : 1.00	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_CDS_m2_run1.nuc.txt

#NT
UAUUGUU	chr1:111492604-111492865(-)$1	261	87	94	13.0270
UAUUUUU	chr16:50109373-50109659(+)$1	286	91	98	17.0810
UAUUUCU	chr3:100009301-100009569(+)$1	268	71	78	13.0945
UGUUUUU	chr1:155233962-155234212(-)$1	250	105	112	12.8918
CAUUUUU	chr13:98009622-98009939(+)$1	317	16	23	13.0270
UAUUUCU	chr13:111869903-111870178(+)$1	275	8	15	13.0945
UUUUUUU	chr14:39627500-39627726(-)$1	226	73	80	12.8243
UAUUUUU	chr11:108150107-108150371(+)$1	264	18	25	17.0810
UAUUUAU	chr12:115115339-115115581(-)$1	242	212	219	12.8243
UAUUUUU	chr12:112480866-112481128(-)$1	262	91	98	17.0810
UAAUUUU	chr5:80074419-80074686(+)$1	267	43	50	12.8243
UAAUUUU	chr14:50300040-50300341(-)$1	301	5	12	12.8243
CAUUUUU	chr17:78279925-78280172(+)$1	247	19	26	13.0270
UAUUUUU	chr3:136237128-136237371(-)$1	243	51	58	17.0810
UACUUUU	chr3:71096111-71096370(-)$1	259	66	73	12.8918
UAAUUUU	chr7:22233547-22233798(-)$1	251	92	99	12.8243
UAUUUUU	chr14:91690879-91691165(+)$1	286	135	142	17.0810
UAUUGUU	chr8:16947872-16948171(+)$1	299	34	41	13.0270
UAUUGUU	chr9:21859193-21859445(+)$1	252	94	101	13.0270
AAUUUUU	chr7:73604459-73604714(+)$1	255	49	56	13.0270
UAUUUUU	chr9:88591501-88591757(+)$1	256	53	60	17.0810
UCUUUUU	chr9:139371956-139372231(-)$1	275	14	21	12.9594
UAUAUUU	chr2:200800604-200800894(-)$1	290	52	59	12.5540
UAUCUUU	chr14:23416802-23417056(-)$1	254	74	81	12.4189
gauuuuu	chr17:62478930-62479178(-)$1	248	229	236	13.1621
UAUUUUC	chr2:3197783-3198061(-)$1	278	91	98	12.8243
UAUUUUU	chr1:63050419-63050683(-)$1	264	70	77	17.0810
UAUUUUC	chr14:23238889-23239120(+)$1	231	100	107	12.8243
UGUUUUU	chr6:166733598-166733858(-)$1	260	87	94	12.8918
UCUUUUU	chr7:17865555-17865830(-)$1	275	61	68	12.9594
UAUUUUU	chr2:172930877-172931132(+)$1	255	51	58	17.0810
UAUUUUC	chr17:4586106-4586353(-)$1	247	34	41	12.8243
UAUUUUA	chr22:29688009-29688258(+)$1	249	87	94	12.6891
UAUUGUU	chr11:86947570-86947832(+)$1	262	6	13	13.0270
UAUUAUU	chr6:56330839-56331098(-)$1	259	63	70	12.9594
UAUUUUU	chr1:110562065-110562290(+)$1	225	42	49	17.0810
UAUAUUU	chr1:70887135-70887401(+)$1	266	25	32	12.5540
UAUUUUU	chr3:69111163-69111424(-)$1	261	239	246	17.0810
UAUUGUU	chr14:74422391-74422650(+)$1	259	49	56	13.0270
UGUUUUU	chr4:164440371-164440624(+)$1	253	52	59	12.8918
UAUUAUU	chr3:122471374-122471640(-)$1	266	1	8	12.9594
UAUUUUU	chr6:116956892-116957157(-)$1	265	33	40	17.0810
UAGUUUU	chr12:9847249-9847496(+)$1	247	22	29	12.6891
UAUUUUU	chr10:70515902-70516193(+)$1	291	213	220	17.0810
UAUUUUU	chr18:77890866-77891119(+)$1	253	214	221	17.0810
UAUUAUU	chr2:110350549-110350820(-)$1	271	53	60	12.9594
UAUUAUU	chr2:112582467-112582716(-)$1	249	55	62	12.9594
GAUUUUU	chr15:23006713-23006976(-)$1	263	2	9	13.1621
UAUUUCU	chr2:86380571-86380815(-)$1	244	43	50	13.0945
GAUUUUU	chr3:9516638-9516896(+)$1	258	84	91	13.1621
AAUUUUU	chr17:58577694-58577951(-)$1	257	73	80	13.0270
UAUUUGU	chr8:128752525-128752819(+)$1	294	35	42	13.0270
UAUUUUG	chr12:12977347-12977635(+)$1	288	61	68	12.6216
GAUUUUU	chr3:142503423-142503734(+)$1	311	18	25	13.1621
UAUUUUU	chr2:86385706-86385963(-)$1	257	75	82	17.0810
UAUUUGU	chr13:100914817-100915108(+)$1	291	70	77	13.0270
UACUUUU	chr14:31381266-31381501(-)$1	235	76	83	12.8918
UAUUUUA	chr12:22672011-22672301(-)$1	290	54	61	12.6891
UCUUUUU	chr19:10284449-10284697(-)$1	248	173	180	12.9594
AAUUUUU	chr19:47712298-47712552(+)$1	254	50	57	13.0270
GAUUUUU	chr4:106180664-106180915(+)$1	251	101	108	13.1621
UAUUUGU	chr5:112928859-112929131(+)$1	272	259	266	13.0270
UAUUUGU	chr11:112100818-112101069(+)$1	251	149	156	13.0270
UAUUUCU	chr2:190327097-190327340(+)$1	243	9	16	13.0945
UAUUUCU	chr12:3923215-3923479(-)$1	264	83	90	13.0945
uauuuuu	chr3:32571669-32571929(-)$1	260	209	216	17.0810
UAUAUUU	chr4:146033284-146033548(+)$1	264	75	82	12.5540
UACUUUU	chr4:186244557-186244808(+)$1	251	95	102	12.8918
UCUUUUU	chr5:78915322-78915580(+)$1	258	93	100	12.9594
UAUUUUC	chr16:50258882-50259137(+)$1	255	29	36	12.8243
UAUUUUU	chr1:160208365-160208636(-)$1	271	29	36	17.0810
UUUUUUU	chr2:54892936-54893163(+)$1	227	96	103	12.8243
CAUUUUU	chr12:107177653-107177905(+)$1	252	21	28	13.0270

#otherMatches

#Struct PSSM
ggggggg	chr12:62954556-62954791(+)$1	235	81	88	12.8918
pgggggg	chr1:111492604-111492865(-)$1	261	87	94	13.0270
BBKKHHH	chr16:50109373-50109659(+)$1	286	91	98	17.0810
gg22ccc	chr3:100009301-100009569(+)$1	268	71	78	13.0945
eee"""d	chr1:155233962-155234212(-)$1	250	105	112	12.8918
ggggggg	chr13:98009622-98009939(+)$1	317	16	23	13.0270
:::::::	chr13:111869903-111870178(+)$1	275	8	15	13.0945
KGGGGGG	chr14:39627500-39627726(-)$1	226	73	80	12.8243
::::::=	chr11:108150107-108150371(+)$1	264	18	25	17.0810
hhhhhll	chr12:115115339-115115581(-)$1	242	212	219	12.8243
oooooa]	chr12:112480866-112481128(-)$1	262	91	98	17.0810
!!ddddm	chr5:80074419-80074686(+)$1	267	43	50	12.8243
DDDDKKC	chr14:50300040-50300341(-)$1	301	5	12	12.8243
nnnnggg	chr17:78279925-78280172(+)$1	247	19	26	13.0270
cccwwww	chr3:136237128-136237371(-)$1	243	51	58	17.0810
ffffff]	chr3:71096111-71096370(-)$1	259	66	73	12.8918
G::::::	chr7:22233547-22233798(-)$1	251	92	99	12.8243
"""gggg	chr14:91690879-91691165(+)$1	286	135	142	17.0810
GGGGGG{	chr8:16947872-16948171(+)$1	299	34	41	13.0270
d:::FFF	chr9:21859193-21859445(+)$1	252	94	101	13.0270
ff:::dd	chr7:73604459-73604714(+)$1	255	49	56	13.0270
[eeeee"	chr9:88591501-88591757(+)$1	256	53	60	17.0810
CCC{FFF	chr9:139371956-139372231(-)$1	275	14	21	12.9594
mmmeeee	chr2:200800604-200800894(-)$1	290	52	59	12.5540
4ffffff	chr14:23416802-23417056(-)$1	254	74	81	12.4189
b::::::	chr17:62478930-62479178(-)$1	248	229	236	13.1621
::::::b	chr2:3197783-3198061(-)$1	278	91	98	12.8243
eee::::	chr1:63050419-63050683(-)$1	264	70	77	17.0810
d####cc	chr14:23238889-23239120(+)$1	231	100	107	12.8243
^^^^^^^	chr6:166733598-166733858(-)$1	260	87	94	12.8918
ff55555	chr7:17865555-17865830(-)$1	275	61	68	12.9594
^^^^^^^	chr2:172930877-172931132(+)$1	255	51	58	17.0810
:::::dd	chr17:4586106-4586353(-)$1	247	34	41	12.8243
mmmmddd	chr22:29688009-29688258(+)$1	249	87	94	12.6891
::::EEE	chr11:86947570-86947832(+)$1	262	6	13	13.0270
mmmmccc	chr6:56330839-56331098(-)$1	259	63	70	12.9594
iiii$$$	chr1:110562065-110562290(+)$1	225	42	49	17.0810
:::::::	chr1:70887135-70887401(+)$1	266	25	32	12.5540
:::::::	chr3:69111163-69111424(-)$1	261	239	246	17.0810
ddddhhh	chr14:74422391-74422650(+)$1	259	49	56	13.0270
EEEEEEE	chr4:164440371-164440624(+)$1	253	52	59	12.8918
EEEEMMM	chr3:122471374-122471640(-)$1	266	1	8	12.9594
:::::::	chr6:116956892-116957157(-)$1	265	33	40	17.0810
sssssss	chr12:9847249-9847496(+)$1	247	22	29	12.6891
dddd22b	chr10:70515902-70516193(+)$1	291	213	220	17.0810
FFYYCCC	chr18:77890866-77891119(+)$1	253	214	221	17.0810
llldddd	chr2:110350549-110350820(-)$1	271	53	60	12.9594
bbnnnnn	chr2:112582467-112582716(-)$1	249	55	62	12.9594
DDDDKKD	chr15:23006713-23006976(-)$1	263	2	9	13.1621
GNNNNNC	chr2:86380571-86380815(-)$1	244	43	50	13.0945
99999hh	chr3:9516638-9516896(+)$1	258	84	91	13.1621
euuuuuu	chr17:58577694-58577951(-)$1	257	73	80	13.0270
ddd22dd	chr8:128752525-128752819(+)$1	294	35	42	13.0270
bb[====	chr12:12977347-12977635(+)$1	288	61	68	12.6216
gggg)))	chr3:142503423-142503734(+)$1	311	18	25	13.1621
5555ggg	chr2:86385706-86385963(-)$1	257	75	82	17.0810
=======	chr13:100914817-100915108(+)$1	291	70	77	13.0270
nccc:::	chr14:31381266-31381501(-)$1	235	76	83	12.8918
ggggggd	chr12:22672011-22672301(-)$1	290	54	61	12.6891
eeee]gg	chr19:10284449-10284697(-)$1	248	173	180	12.9594
c^^^^^^	chr19:47712298-47712552(+)$1	254	50	57	13.0270
ggmmmmg	chr4:106180664-106180915(+)$1	251	101	108	13.1621
d333ddd	chr5:112928859-112929131(+)$1	272	259	266	13.0270
]bb22ff	chr11:112100818-112101069(+)$1	251	149	156	13.0270
NNNCCCK	chr2:190327097-190327340(+)$1	243	9	16	13.0945
gggmmmm	chr12:3923215-3923479(-)$1	264	83	90	13.0945
======5	chr3:32571669-32571929(-)$1	260	209	216	17.0810
ggggg22	chr4:146033284-146033548(+)$1	264	75	82	12.5540
e:::FFF	chr4:186244557-186244808(+)$1	251	95	102	12.8918
sssss==	chr5:78915322-78915580(+)$1	258	93	100	12.9594
IIIIIII	chr16:50258882-50259137(+)$1	255	29	36	12.8243
^^^^^^^	chr1:160208365-160208636(-)$1	271	29	36	17.0810
E::::::	chr2:54892936-54893163(+)$1	227	96	103	12.8243
+++++++	chr12:107177653-107177905(+)$1	252	21	28	13.0270

#DB
)))))))	chr12:62954556-62954791(+)$1	1	81	88	12.8918
.))))))	chr1:111492604-111492865(-)$1	1	87	94	13.0270
((..(((	chr16:50109373-50109659(+)$1	1	91	98	17.0810
))..)))	chr3:100009301-100009569(+)$1	1	71	78	13.0945
(((...(	chr1:155233962-155234212(-)$1	1	105	112	12.8918
(((((((	chr13:98009622-98009939(+)$1	1	16	23	13.0270
.......	chr13:111869903-111870178(+)$1	1	8	15	13.0945
.((((((	chr14:39627500-39627726(-)$1	1	73	80	12.8243
......(	chr11:108150107-108150371(+)$1	1	18	25	17.0810
(((((..	chr12:115115339-115115581(-)$1	1	212	219	12.8243
.....).	chr12:112480866-112481128(-)$1	1	91	98	17.0810
..((((.	chr5:80074419-80074686(+)$1	1	43	50	12.8243
((((..(	chr14:50300040-50300341(-)$1	1	5	12	12.8243
....)))	chr17:78279925-78280172(+)$1	1	19	26	13.0270
(((....	chr3:136237128-136237371(-)$1	1	51	58	17.0810
)))))).	chr3:71096111-71096370(-)$1	1	66	73	12.8918
(......	chr7:22233547-22233798(-)$1	1	92	99	12.8243
...((((	chr14:91690879-91691165(+)$1	1	135	142	17.0810
((((((.	chr8:16947872-16948171(+)$1	1	34	41	13.0270
)...(((	chr9:21859193-21859445(+)$1	1	94	101	13.0270
))...((	chr7:73604459-73604714(+)$1	1	49	56	13.0270
.(((((.	chr9:88591501-88591757(+)$1	1	53	60	17.0810
(((.(((	chr9:139371956-139372231(-)$1	1	14	21	12.9594
...))))	chr2:200800604-200800894(-)$1	1	52	59	12.5540
.))))))	chr14:23416802-23417056(-)$1	1	74	81	12.4189
)......	chr17:62478930-62479178(-)$1	1	229	236	13.1621
......(	chr2:3197783-3198061(-)$1	1	91	98	12.8243
)))....	chr1:63050419-63050683(-)$1	1	70	77	17.0810
(....((	chr14:23238889-23239120(+)$1	1	100	107	12.8243
.......	chr6:166733598-166733858(-)$1	1	87	94	12.8918
)).....	chr7:17865555-17865830(-)$1	1	61	68	12.9594
.......	chr2:172930877-172931132(+)$1	1	51	58	17.0810
.....((	chr17:4586106-4586353(-)$1	1	34	41	12.8243
....)))	chr22:29688009-29688258(+)$1	1	87	94	12.6891
....(((	chr11:86947570-86947832(+)$1	1	6	13	13.0270
....)))	chr6:56330839-56331098(-)$1	1	63	70	12.9594
((((...	chr1:110562065-110562290(+)$1	1	42	49	17.0810
.......	chr1:70887135-70887401(+)$1	1	25	32	12.5540
.......	chr3:69111163-69111424(-)$1	1	239	246	17.0810
(((((((	chr14:74422391-74422650(+)$1	1	49	56	13.0270
(((((((	chr4:164440371-164440624(+)$1	1	52	59	12.8918
((((...	chr3:122471374-122471640(-)$1	1	1	8	12.9594
.......	chr6:116956892-116957157(-)$1	1	33	40	17.0810
.......	chr12:9847249-9847496(+)$1	1	22	29	12.6891
))))..)	chr10:70515902-70516193(+)$1	1	213	220	17.0810
))..)))	chr18:77890866-77891119(+)$1	1	214	221	17.0810
...))))	chr2:110350549-110350820(-)$1	1	53	60	12.9594
((.....	chr2:112582467-112582716(-)$1	1	55	62	12.9594
((((..(	chr15:23006713-23006976(-)$1	1	2	9	13.1621
(.....(	chr2:86380571-86380815(-)$1	1	43	50	13.0945
.....))	chr3:9516638-9516896(+)$1	1	84	91	13.1621
(......	chr17:58577694-58577951(-)$1	1	73	80	13.0270
)))..))	chr8:128752525-128752819(+)$1	1	35	42	13.0270
((.((((	chr12:12977347-12977635(+)$1	1	61	68	12.6216
((((...	chr3:142503423-142503734(+)$1	1	18	25	13.1621
....)))	chr2:86385706-86385963(-)$1	1	75	82	17.0810
)))))))	chr13:100914817-100915108(+)$1	1	70	77	13.0270
.)))...	chr14:31381266-31381501(-)$1	1	76	83	12.8918
))))))(	chr12:22672011-22672301(-)$1	1	54	61	12.6891
)))).))	chr19:10284449-10284697(-)$1	1	173	180	12.9594
(......	chr19:47712298-47712552(+)$1	1	50	57	13.0270
((....)	chr4:106180664-106180915(+)$1	1	101	108	13.1621
)...)))	chr5:112928859-112929131(+)$1	1	259	266	13.0270
.))..))	chr11:112100818-112101069(+)$1	1	149	156	13.0270
...(((.	chr2:190327097-190327340(+)$1	1	9	16	13.0945
(((....	chr12:3923215-3923479(-)$1	1	83	90	13.0945
)))))).	chr3:32571669-32571929(-)$1	1	209	216	17.0810
)))))..	chr4:146033284-146033548(+)$1	1	75	82	12.5540
)...(((	chr4:186244557-186244808(+)$1	1	95	102	12.8918
.....))	chr5:78915322-78915580(+)$1	1	93	100	12.9594
(((((((	chr16:50258882-50259137(+)$1	1	29	36	12.8243
.......	chr1:160208365-160208636(-)$1	1	29	36	17.0810
)......	chr2:54892936-54893163(+)$1	1	96	103	12.8243
.......	chr12:107177653-107177905(+)$1	1	21	28	13.0270

#PSSM
U : 0.83	G : 0.05	C : 0.04	A : 0.04	g : 0.01	u : 0.01	
A : 0.85	C : 0.05	G : 0.04	U : 0.02	a : 0.02	
U : 0.86	C : 0.05	A : 0.04	u : 0.02	G : 0.01	
U : 0.91	A : 0.04	u : 0.02	C : 0.01	
U : 0.85	G : 0.06	A : 0.05	u : 0.02	
U : 0.83	C : 0.06	G : 0.05	u : 0.02	A : 0.01	
U : 0.87	C : 0.05	u : 0.02	A : 0.02	G : 0.01	

#score	1022.9189189189174
#seq	74
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_transcript_m3_run1.nuc.txt

#NT
CUG	chr12:76448767-76448971(-)$1	204	26	29	9.0000
CUG	chr22:23522592-23522842(+)$1	250	12	15	9.0000
CUG	chr1:153634768-153635025(-)$1	257	2	5	9.0000
CUG	chr5:139876310-139876608(+)$1	298	60	63	9.0000
CUG	chr15:41758239-41758478(+)$1	239	56	59	9.0000
CUG	chr11:57095769-57096000(-)$1	231	35	38	9.0000
CUG	chr17:80441560-80441830(+)$1	270	25	28	9.0000
CUG	chr4:77951944-77952224(+)$1	280	139	142	9.0000
CUG	chr2:102481291-102481562(+)$1	271	13	16	9.0000
CUG	chr4:190873219-190873460(+)$1	241	48	51	9.0000
cug	chr19:38872692-38872943(+)$1	251	14	17	9.0000
CUG	chr11:118919333-118919603(-)$1	270	33	36	9.0000
CUG	chr17:48827765-48827979(+)$1	214	108	111	9.0000
CUG	chr6:44371632-44371865(+)$1	233	32	35	9.0000
CUG	chr3:170906458-170906722(-)$1	264	171	174	9.0000
CUG	chr2:71360515-71360809(+)$1	294	45	48	9.0000
CUG	chr4:2951673-2951938(-)$1	265	59	62	9.0000
CUG	chr12:6687097-6687333(-)$1	236	94	97	9.0000
CUG	chr1:227381453-227381737(-)$1	284	0	3	9.0000
CUG	chr1:52305805-52306141(-)$1	336	92	95	9.0000
CUG	chr18:42259063-42259283(-)$1	220	8	11	9.0000
CUG	chr10:79799863-79800083(+)$1	220	89	92	9.0000
CUG	chr19:48254246-48254465(+)$1	219	0	3	9.0000
CUG	chr1:93300315-93300566(+)$1	251	55	58	9.0000
CUG	chr19:55648369-55648608(-)$1	239	4	7	9.0000
CUG	chr14:102548670-102548881(-)$1	211	135	138	9.0000
CUG	chr3:185135779-185136042(-)$1	263	3	6	9.0000
CUG	chr19:3980489-3980707(-)$1	218	10	13	9.0000
CUG	chr11:129939688-129940075(+)$1	387	3	6	9.0000
CUG	chr6:7301480-7301784(-)$1	304	8	11	9.0000
cug	chr19:5714135-5714365(-)$1	230	27	30	9.0000
CUG	chr14:102452216-102452502(+)$1	286	116	119	9.0000
CUG	chr12:76449822-76450035(-)$1	213	1	4	9.0000
CUG	chr7:96324009-96324287(-)$1	278	68	71	9.0000
CUG	chr6:24781629-24781899(+)$1	270	75	78	9.0000
CUG	chr12:112279927-112280221(+)$1	294	20	23	9.0000
CUG	chr14:102550927-102551137(-)$1	210	26	29	9.0000
CUG	chr1:33245587-33245877(-)$1	290	16	19	9.0000
CUG	chr1:8934790-8935045(-)$1	255	50	53	9.0000
CUG	chr12:112845984-112846224(-)$1	240	56	59	9.0000
CUG	chr7:6196382-6196735(+)$1	353	37	40	9.0000
CUG	chr5:179147430-179147657(+)$1	227	39	42	9.0000
CUG	chr16:50354064-50354403(-)$1	339	56	59	9.0000
CUG	chr5:149775851-149776110(+)$1	259	5	8	9.0000
CUG	chr16:57188049-57188340(-)$1	291	16	19	9.0000
CUG	chr20:306960-307285(+)$1	325	31	34	9.0000
CUG	chr1:35658172-35658429(-)$1	257	242	245	9.0000
CUG	chr12:56510850-56511079(+)$1	229	11	14	9.0000
CUG	chr1:117617909-117618187(+)$1	278	56	59	9.0000
CUG	chr19:1106309-1106556(+)$1	247	109	112	9.0000
CUG	chr20:34637150-34637410(-)$1	260	24	27	9.0000
CUG	chr4:144474171-144474420(+)$1	249	38	41	9.0000
CUG	chr12:76449714-76449939(-)$1	225	71	74	9.0000
CUG	chr12:56500694-56500950(+)$1	256	16	19	9.0000
CUG	chr6:37142703-37142924(+)$1	221	7	10	9.0000
CUG	chr13:107211619-107211891(-)$1	272	83	86	9.0000
CUG	chr19:55649255-55649543(-)$1	288	2	5	9.0000
CUG	chr2:131976037-131976314(+)$1	277	21	24	9.0000
CUG	chr7:156746695-156746940(+)$1	245	46	49	9.0000
CUG	chr16:89627358-89627572(+)$1	214	59	62	9.0000
cug	chr6:30550068-30550385(+)$1	317	5	8	9.0000
CUG	chr13:98666194-98666450(+)$1	256	139	142	9.0000
CUG	chr15:44063311-44063634(+)$1	323	49	52	9.0000
CUG	chr1:26594956-26595225(+)$1	269	122	125	9.0000
CUG	chr9:100692216-100692445(-)$1	229	136	139	9.0000
CUG	chr20:34637911-34638152(-)$1	241	8	11	9.0000
CUG	chr6:33258029-33258288(+)$1	259	0	3	9.0000
CUG	chr14:21820594-21820870(-)$1	276	10	13	9.0000
CUG	chr2:96957513-96957737(-)$1	224	7	10	9.0000
CUG	chr9:139564428-139564680(+)$1	252	0	3	9.0000
CUG	chr16:3779002-3779276(-)$1	274	86	89	9.0000
cug	chr22:38355252-38355584(+)$1	332	6	9	9.0000
CUG	chr22:30742219-30742605(-)$1	386	105	108	9.0000
CUG	chr17:1268050-1268283(-)$1	233	3	6	9.0000
CUG	chr12:76442108-76442321(-)$1	213	28	31	9.0000
cug	chr5:176942088-176942304(-)$1	216	7	10	9.0000
CUG	chr19:5694387-5694657(-)$1	270	19	22	9.0000
CUG	chr20:34636242-34636496(-)$1	254	98	101	9.0000
CUG	chr1:95662223-95662476(+)$1	253	34	37	9.0000
CUG	chr11:486963-487224(+)$1	261	20	23	9.0000
CUG	chr17:61685067-61685369(+)$1	302	8	11	9.0000
CUG	chrX:70766766-70767045(+)$1	279	58	61	9.0000
CUG	chr1:35652605-35652824(-)$1	219	66	69	9.0000
CUG	chr11:486368-486616(+)$1	248	9	12	9.0000
CUG	chr5:149772860-149773157(+)$1	297	16	19	9.0000
cug	chr5:176942104-176942360(-)$1	256	7	10	9.0000
CUG	chr6:26056065-26056293(-)$1	228	61	64	9.0000
CUG	chrX:53423116-53423400(-)$1	284	25	28	9.0000
CUG	chr19:3980750-3980971(-)$1	221	8	11	9.0000
CUG	chr12:56189707-56189913(-)$1	206	85	88	9.0000
CUG	chr1:229462389-229462670(-)$1	281	113	116	9.0000
CUG	chr16:1741815-1742081(+)$1	266	10	13	9.0000
CUG	chr19:39949419-39949628(+)$1	209	1	4	9.0000
cug	chr2:97559876-97560200(-)$1	324	26	29	9.0000
CUG	chr14:24607156-24607399(+)$1	243	49	52	9.0000
CUG	chr2:101622718-101622947(+)$1	229	75	78	9.0000
CUG	chr21:30433528-30433805(-)$1	277	1	4	9.0000

#otherMatches

#Struct PSSM
eee	chr9:131285771-131286089(+)$1	318	4	7	9.0000
!!c	chr12:76448767-76448971(-)$1	204	26	29	9.0000
CC{	chr22:23522592-23522842(+)$1	250	12	15	9.0000
:::	chr1:153634768-153635025(-)$1	257	2	5	9.0000
bb8	chr5:139876310-139876608(+)$1	298	60	63	9.0000
ddd	chr15:41758239-41758478(+)$1	239	56	59	9.0000
{GG	chr11:57095769-57096000(-)$1	231	35	38	9.0000
ccc	chr17:80441560-80441830(+)$1	270	25	28	9.0000
hhh	chr4:77951944-77952224(+)$1	280	139	142	9.0000
LLL	chr2:102481291-102481562(+)$1	271	13	16	9.0000
cc:	chr4:190873219-190873460(+)$1	241	48	51	9.0000
eee	chr19:38872692-38872943(+)$1	251	14	17	9.0000
dd4	chr11:118919333-118919603(-)$1	270	33	36	9.0000
]dd	chr17:48827765-48827979(+)$1	214	108	111	9.0000
::F	chr6:44371632-44371865(+)$1	233	32	35	9.0000
ggg	chr3:170906458-170906722(-)$1	264	171	174	9.0000
EE:	chr2:71360515-71360809(+)$1	294	45	48	9.0000
eee	chr4:2951673-2951938(-)$1	265	59	62	9.0000
cc4	chr12:6687097-6687333(-)$1	236	94	97	9.0000
:::	chr1:227381453-227381737(-)$1	284	0	3	9.0000
hh^	chr1:52305805-52306141(-)$1	336	92	95	9.0000
cqq	chr18:42259063-42259283(-)$1	220	8	11	9.0000
eee	chr10:79799863-79800083(+)$1	220	89	92	9.0000
::B	chr19:48254246-48254465(+)$1	219	0	3	9.0000
ggg	chr1:93300315-93300566(+)$1	251	55	58	9.0000
:::	chr19:55648369-55648608(-)$1	239	4	7	9.0000
[cc	chr14:102548670-102548881(-)$1	211	135	138	9.0000
FFF	chr3:185135779-185136042(-)$1	263	3	6	9.0000
FFF	chr19:3980489-3980707(-)$1	218	10	13	9.0000
GGG	chr11:129939688-129940075(+)$1	387	3	6	9.0000
GGG	chr6:7301480-7301784(-)$1	304	8	11	9.0000
llf	chr19:5714135-5714365(-)$1	230	27	30	9.0000
ccc	chr14:102452216-102452502(+)$1	286	116	119	9.0000
:::	chr12:76449822-76450035(-)$1	213	1	4	9.0000
ff"	chr7:96324009-96324287(-)$1	278	68	71	9.0000
ddd	chr6:24781629-24781899(+)$1	270	75	78	9.0000
III	chr12:112279927-112280221(+)$1	294	20	23	9.0000
mmb	chr14:102550927-102551137(-)$1	210	26	29	9.0000
hhh	chr1:33245587-33245877(-)$1	290	16	19	9.0000
##c	chr1:8934790-8935045(-)$1	255	50	53	9.0000
e##	chr12:112845984-112846224(-)$1	240	56	59	9.0000
FFF	chr7:6196382-6196735(+)$1	353	37	40	9.0000
"""	chr5:179147430-179147657(+)$1	227	39	42	9.0000
ccc	chr16:50354064-50354403(-)$1	339	56	59	9.0000
DD{	chr5:149775851-149776110(+)$1	259	5	8	9.0000
"""	chr16:57188049-57188340(-)$1	291	16	19	9.0000
ggg	chr20:306960-307285(+)$1	325	31	34	9.0000
DDD	chr1:35658172-35658429(-)$1	257	242	245	9.0000
fnn	chr12:56510850-56511079(+)$1	229	11	14	9.0000
eee	chr1:117617909-117618187(+)$1	278	56	59	9.0000
22b	chr19:1106309-1106556(+)$1	247	109	112	9.0000
iii	chr20:34637150-34637410(-)$1	260	24	27	9.0000
33h	chr4:144474171-144474420(+)$1	249	38	41	9.0000
bb2	chr12:76449714-76449939(-)$1	225	71	74	9.0000
rre	chr12:56500694-56500950(+)$1	256	16	19	9.0000
GGG	chr6:37142703-37142924(+)$1	221	7	10	9.0000
ggg	chr13:107211619-107211891(-)$1	272	83	86	9.0000
eee	chr19:55649255-55649543(-)$1	288	2	5	9.0000
HHC	chr2:131976037-131976314(+)$1	277	21	24	9.0000
:::	chr7:156746695-156746940(+)$1	245	46	49	9.0000
:::	chr16:89627358-89627572(+)$1	214	59	62	9.0000
::D	chr6:30550068-30550385(+)$1	317	5	8	9.0000
mmd	chr13:98666194-98666450(+)$1	256	139	142	9.0000
eee	chr15:44063311-44063634(+)$1	323	49	52	9.0000
hhh	chr1:26594956-26595225(+)$1	269	122	125	9.0000
d]d	chr9:100692216-100692445(-)$1	229	136	139	9.0000
c[d	chr20:34637911-34638152(-)$1	241	8	11	9.0000
ccc	chr6:33258029-33258288(+)$1	259	0	3	9.0000
e''	chr14:21820594-21820870(-)$1	276	10	13	9.0000
HHH	chr2:96957513-96957737(-)$1	224	7	10	9.0000
HHH	chr9:139564428-139564680(+)$1	252	0	3	9.0000
ddd	chr16:3779002-3779276(-)$1	274	86	89	9.0000
fee	chr22:38355252-38355584(+)$1	332	6	9	9.0000
:hh	chr22:30742219-30742605(-)$1	386	105	108	9.0000
:::	chr17:1268050-1268283(-)$1	233	3	6	9.0000
B{F	chr12:76442108-76442321(-)$1	213	28	31	9.0000
::c	chr5:176942088-176942304(-)$1	216	7	10	9.0000
AEE	chr19:5694387-5694657(-)$1	270	19	22	9.0000
d[e	chr20:34636242-34636496(-)$1	254	98	101	9.0000
ppp	chr1:95662223-95662476(+)$1	253	34	37	9.0000
ddd	chr11:486963-487224(+)$1	261	20	23	9.0000
:::	chr17:61685067-61685369(+)$1	302	8	11	9.0000
GGG	chrX:70766766-70767045(+)$1	279	58	61	9.0000
$ff	chr1:35652605-35652824(-)$1	219	66	69	9.0000
H::	chr11:486368-486616(+)$1	248	9	12	9.0000
eee	chr5:149772860-149773157(+)$1	297	16	19	9.0000
eee	chr5:176942104-176942360(-)$1	256	7	10	9.0000
III	chr6:26056065-26056293(-)$1	228	61	64	9.0000
b[e	chrX:53423116-53423400(-)$1	284	25	28	9.0000
DDD	chr19:3980750-3980971(-)$1	221	8	11	9.0000
eee	chr12:56189707-56189913(-)$1	206	85	88	9.0000
aff	chr1:229462389-229462670(-)$1	281	113	116	9.0000
ccc	chr16:1741815-1742081(+)$1	266	10	13	9.0000
CCK	chr19:39949419-39949628(+)$1	209	1	4	9.0000
ff[	chr2:97559876-97560200(-)$1	324	26	29	9.0000
HHH	chr14:24607156-24607399(+)$1	243	49	52	9.0000
===	chr2:101622718-101622947(+)$1	229	75	78	9.0000
:::	chr21:30433528-30433805(-)$1	277	1	4	9.0000

#DB
(((	chr9:131285771-131286089(+)$1	1	4	7	9.0000
..(	chr12:76448767-76448971(-)$1	1	26	29	9.0000
((.	chr22:23522592-23522842(+)$1	1	12	15	9.0000
...	chr1:153634768-153635025(-)$1	1	2	5	9.0000
)).	chr5:139876310-139876608(+)$1	1	60	63	9.0000
)))	chr15:41758239-41758478(+)$1	1	56	59	9.0000
.((	chr11:57095769-57096000(-)$1	1	35	38	9.0000
(((	chr17:80441560-80441830(+)$1	1	25	28	9.0000
)))	chr4:77951944-77952224(+)$1	1	139	142	9.0000
...	chr2:102481291-102481562(+)$1	1	13	16	9.0000
)).	chr4:190873219-190873460(+)$1	1	48	51	9.0000
(((	chr19:38872692-38872943(+)$1	1	14	17	9.0000
)).	chr11:118919333-118919603(-)$1	1	33	36	9.0000
.))	chr17:48827765-48827979(+)$1	1	108	111	9.0000
..(	chr6:44371632-44371865(+)$1	1	32	35	9.0000
)))	chr3:170906458-170906722(-)$1	1	171	174	9.0000
((.	chr2:71360515-71360809(+)$1	1	45	48	9.0000
(((	chr4:2951673-2951938(-)$1	1	59	62	9.0000
)).	chr12:6687097-6687333(-)$1	1	94	97	9.0000
...	chr1:227381453-227381737(-)$1	1	0	3	9.0000
((.	chr1:52305805-52306141(-)$1	1	92	95	9.0000
(..	chr18:42259063-42259283(-)$1	1	8	11	9.0000
(((	chr10:79799863-79800083(+)$1	1	89	92	9.0000
..(	chr19:48254246-48254465(+)$1	1	0	3	9.0000
)))	chr1:93300315-93300566(+)$1	1	55	58	9.0000
...	chr19:55648369-55648608(-)$1	1	4	7	9.0000
.((	chr14:102548670-102548881(-)$1	1	135	138	9.0000
(((	chr3:185135779-185136042(-)$1	1	3	6	9.0000
(((	chr19:3980489-3980707(-)$1	1	10	13	9.0000
(((	chr11:129939688-129940075(+)$1	1	3	6	9.0000
(((	chr6:7301480-7301784(-)$1	1	8	11	9.0000
..)	chr19:5714135-5714365(-)$1	1	27	30	9.0000
)))	chr14:102452216-102452502(+)$1	1	116	119	9.0000
...	chr12:76449822-76450035(-)$1	1	1	4	9.0000
((.	chr7:96324009-96324287(-)$1	1	68	71	9.0000
(((	chr6:24781629-24781899(+)$1	1	75	78	9.0000
(((	chr12:112279927-112280221(+)$1	1	20	23	9.0000
..)	chr14:102550927-102551137(-)$1	1	26	29	9.0000
(((	chr1:33245587-33245877(-)$1	1	16	19	9.0000
..(	chr1:8934790-8935045(-)$1	1	50	53	9.0000
(..	chr12:112845984-112846224(-)$1	1	56	59	9.0000
(((	chr7:6196382-6196735(+)$1	1	37	40	9.0000
...	chr5:179147430-179147657(+)$1	1	39	42	9.0000
(((	chr16:50354064-50354403(-)$1	1	56	59	9.0000
((.	chr5:149775851-149776110(+)$1	1	5	8	9.0000
...	chr16:57188049-57188340(-)$1	1	16	19	9.0000
(((	chr20:306960-307285(+)$1	1	31	34	9.0000
)))	chr1:35658172-35658429(-)$1	1	242	245	9.0000
(..	chr12:56510850-56511079(+)$1	1	11	14	9.0000
)))	chr1:117617909-117618187(+)$1	1	56	59	9.0000
..)	chr19:1106309-1106556(+)$1	1	109	112	9.0000
)))	chr20:34637150-34637410(-)$1	1	24	27	9.0000
..)	chr4:144474171-144474420(+)$1	1	38	41	9.0000
)).	chr12:76449714-76449939(-)$1	1	71	74	9.0000
..)	chr12:56500694-56500950(+)$1	1	16	19	9.0000
(((	chr6:37142703-37142924(+)$1	1	7	10	9.0000
(((	chr13:107211619-107211891(-)$1	1	83	86	9.0000
(((	chr19:55649255-55649543(-)$1	1	2	5	9.0000
(((	chr2:131976037-131976314(+)$1	1	21	24	9.0000
...	chr7:156746695-156746940(+)$1	1	46	49	9.0000
...	chr16:89627358-89627572(+)$1	1	59	62	9.0000
..(	chr6:30550068-30550385(+)$1	1	5	8	9.0000
..)	chr13:98666194-98666450(+)$1	1	139	142	9.0000
(((	chr15:44063311-44063634(+)$1	1	49	52	9.0000
(((	chr1:26594956-26595225(+)$1	1	122	125	9.0000
).)	chr9:100692216-100692445(-)$1	1	136	139	9.0000
(.(	chr20:34637911-34638152(-)$1	1	8	11	9.0000
(((	chr6:33258029-33258288(+)$1	1	0	3	9.0000
(..	chr14:21820594-21820870(-)$1	1	10	13	9.0000
(((	chr2:96957513-96957737(-)$1	1	7	10	9.0000
(((	chr9:139564428-139564680(+)$1	1	0	3	9.0000
(((	chr16:3779002-3779276(-)$1	1	86	89	9.0000
(((	chr22:38355252-38355584(+)$1	1	6	9	9.0000
.((	chr22:30742219-30742605(-)$1	1	105	108	9.0000
...	chr17:1268050-1268283(-)$1	1	3	6	9.0000
(.(	chr12:76442108-76442321(-)$1	1	28	31	9.0000
..(	chr5:176942088-176942304(-)$1	1	7	10	9.0000
(((	chr19:5694387-5694657(-)$1	1	19	22	9.0000
(.(	chr20:34636242-34636496(-)$1	1	98	101	9.0000
...	chr1:95662223-95662476(+)$1	1	34	37	9.0000
(((	chr11:486963-487224(+)$1	1	20	23	9.0000
...	chr17:61685067-61685369(+)$1	1	8	11	9.0000
(((	chrX:70766766-70767045(+)$1	1	58	61	9.0000
.((	chr1:35652605-35652824(-)$1	1	66	69	9.0000
(..	chr11:486368-486616(+)$1	1	9	12	9.0000
(((	chr5:149772860-149773157(+)$1	1	16	19	9.0000
(((	chr5:176942104-176942360(-)$1	1	7	10	9.0000
(((	chr6:26056065-26056293(-)$1	1	61	64	9.0000
(.(	chrX:53423116-53423400(-)$1	1	25	28	9.0000
(((	chr19:3980750-3980971(-)$1	1	8	11	9.0000
)))	chr12:56189707-56189913(-)$1	1	85	88	9.0000
)))	chr1:229462389-229462670(-)$1	1	113	116	9.0000
(((	chr16:1741815-1742081(+)$1	1	10	13	9.0000
((.	chr19:39949419-39949628(+)$1	1	1	4	9.0000
((.	chr2:97559876-97560200(-)$1	1	26	29	9.0000
(((	chr14:24607156-24607399(+)$1	1	49	52	9.0000
(((	chr2:101622718-101622947(+)$1	1	75	78	9.0000
...	chr21:30433528-30433805(-)$1	1	1	4	9.0000

#PSSM
C : 0.92	c : 0.07	
U : 0.92	u : 0.07	
G : 0.92	g : 0.07	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_UTR_m3_run1.nuc.txt

#NT
uuccu	chr19:54645064-54645302(+)$1	238	176	181	15.0000
UUCCU	chr11:119171608-119171867(+)$1	259	104	109	15.0000
uuccu	chr1:120262439-120262713(+)$1	274	184	189	15.0000
UUCCU	chr2:61153921-61154200(+)$1	279	40	45	15.0000
UUCCU	chr7:73110748-73111013(+)$1	265	70	75	15.0000
UUCCU	chr1:113668479-113668743(+)$1	264	165	170	15.0000
uuccu	chr4:1386272-1386539(+)$1	267	30	35	15.0000
UUCCU	chr22:43398309-43398549(-)$1	240	56	61	15.0000
uuccu	chr8:59362375-59362649(+)$1	274	143	148	15.0000
UUCCU	chr10:124146840-124147081(+)$1	241	182	187	15.0000
UUCCU	chr1:113668121-113668371(+)$1	250	15	20	15.0000
UUCCU	chr5:112228298-112228614(-)$1	316	293	298	15.0000
uuccu	chr13:50068433-50068696(+)$1	263	129	134	15.0000
UUCCU	chr10:72186540-72186820(+)$1	280	78	83	15.0000
UUCCU	chr2:85547314-85547585(-)$1	271	43	48	15.0000
UUCCU	chr1:55352268-55352513(-)$1	245	58	63	15.0000
uuccu	chr2:71213950-71214226(-)$1	276	76	81	15.0000
UUCCU	chr17:66509024-66509284(+)$1	260	17	22	15.0000
uuccu	chr12:66250216-66250494(+)$1	278	3	8	15.0000
UUCCU	chr16:70191483-70191745(+)$1	262	206	211	15.0000
UUCCU	chr3:99569627-99569901(+)$1	274	10	15	15.0000
UUCCU	chr6:160166057-160166296(+)$1	239	204	209	15.0000
UUCCU	chr10:124147010-124147315(+)$1	305	12	17	15.0000
UUCCU	chr7:66105808-66106075(+)$1	267	157	162	15.0000
UUCCU	chr1:91966694-91966948(+)$1	254	146	151	15.0000
UUCCU	chr2:61153801-61154068(+)$1	267	160	165	15.0000
UUCCU	chr12:56321077-56321339(-)$1	262	154	159	15.0000
UUCCU	chr2:169721742-169722047(-)$1	305	126	131	15.0000
uuccu	chr2:71213667-71213873(-)$1	206	142	147	15.0000
uuccu	chr2:241318-241568(-)$1	250	107	112	15.0000
UUCCU	chr16:70191623-70191868(+)$1	245	66	71	15.0000
UUCCU	chr16:70193520-70193762(+)$1	242	82	87	15.0000
uuccu	chr19:54644997-54645264(+)$1	267	243	248	15.0000
UUCCU	chr20:36146713-36146951(-)$1	238	25	30	15.0000
UUCCU	chr11:116739740-116739980(-)$1	240	79	84	15.0000
uuccu	chr11:12962489-12962749(+)$1	260	110	115	15.0000
UUCCU	chr2:85546844-85547085(-)$1	241	139	144	15.0000
uuccu	chr15:93564963-93565207(+)$1	244	194	199	15.0000
uuccu	chr2:71213567-71213820(-)$1	253	89	94	15.0000
UUCCU	chr17:62118737-62119059(-)$1	322	86	91	15.0000
UUCCU	chr17:55173073-55173339(+)$1	266	155	160	15.0000
uuccu	chr20:30960186-30960433(+)$1	247	61	66	15.0000
uuccu	chr3:187896255-187896542(+)$1	287	71	76	15.0000
UUCCU	chr7:141463800-141464072(+)$1	272	182	187	15.0000
UUCCU	chr11:116739512-116739781(-)$1	269	35	40	15.0000
uuccu	chr2:71213452-71213749(-)$1	297	18	23	15.0000
uuccu	chr15:49517295-49517548(+)$1	253	42	47	15.0000
UUCCU	chr2:85547111-85547337(-)$1	226	161	166	15.0000
uuccu	chr2:32991435-32991698(+)$1	263	27	32	15.0000
UUCCU	chr2:71214859-71215102(-)$1	243	195	200	15.0000
uuccu	chr11:12962298-12962580(+)$1	282	36	41	15.0000
UUCCU	chr18:32918446-32918691(-)$1	245	105	110	15.0000
UUCCU	chr2:85547835-85548095(-)$1	260	253	258	15.0000
UUCCU	chr2:85547739-85548015(-)$1	276	173	178	15.0000
UUCCU	chr2:85547685-85547915(-)$1	230	73	78	15.0000
UUCCU	chr2:85547617-85547885(-)$1	268	43	48	15.0000
UUCCU	chr7:141464793-141465050(+)$1	257	179	184	15.0000
uuccu	chrX:77382790-77383050(+)$1	260	84	89	15.0000
uuccu	chr18:77690179-77690416(-)$1	237	183	188	15.0000
UUCCU	chr21:45937025-45937348(+)$1	323	77	82	15.0000
UUCCU	chr11:118321290-118321599(+)$1	309	124	129	15.0000
UUCCU	chr2:85547144-85547411(-)$1	267	235	240	15.0000
uuccu	chr2:138724975-138725206(+)$1	231	158	163	15.0000

#otherMatches

#Struct PSSM
ddddq	chr4:1386719-1386971(+)$1	252	180	185	15.0000
99999	chr19:54645064-54645302(+)$1	238	176	181	15.0000
:eeee	chr11:119171608-119171867(+)$1	259	104	109	15.0000
hhhhh	chr1:120262439-120262713(+)$1	274	184	189	15.0000
MMMMD	chr2:61153921-61154200(+)$1	279	40	45	15.0000
::ggg	chr7:73110748-73111013(+)$1	265	70	75	15.0000
eee]e	chr1:113668479-113668743(+)$1	264	165	170	15.0000
ccc[c	chr4:1386272-1386539(+)$1	267	30	35	15.0000
eeeee	chr22:43398309-43398549(-)$1	240	56	61	15.0000
:bb[d	chr8:59362375-59362649(+)$1	274	143	148	15.0000
g::::	chr10:124146840-124147081(+)$1	241	182	187	15.0000
c%%%%	chr1:113668121-113668371(+)$1	250	15	20	15.0000
hpppp	chr5:112228298-112228614(-)$1	316	293	298	15.0000
!!bb!	chr13:50068433-50068696(+)$1	263	129	134	15.0000
&&&bb	chr10:72186540-72186820(+)$1	280	78	83	15.0000
:::::	chr2:85547314-85547585(-)$1	271	43	48	15.0000
ggggg	chr1:55352268-55352513(-)$1	245	58	63	15.0000
OOOOO	chr2:71213950-71214226(-)$1	276	76	81	15.0000
:::::	chr17:66509024-66509284(+)$1	260	17	22	15.0000
:::::	chr12:66250216-66250494(+)$1	278	3	8	15.0000
>>>>>	chr16:70191483-70191745(+)$1	262	206	211	15.0000
&&&&&	chr3:99569627-99569901(+)$1	274	10	15	15.0000
>>>>>	chr6:160166057-160166296(+)$1	239	204	209	15.0000
:::::	chr10:124147010-124147315(+)$1	305	12	17	15.0000
'''''	chr7:66105808-66106075(+)$1	267	157	162	15.0000
:::::	chr1:91966694-91966948(+)$1	254	146	151	15.0000
:::::	chr2:61153801-61154068(+)$1	267	160	165	15.0000
:dddd	chr12:56321077-56321339(-)$1	262	154	159	15.0000
eeee8	chr2:169721742-169722047(-)$1	305	126	131	15.0000
iiiii	chr2:71213667-71213873(-)$1	206	142	147	15.0000
:::::	chr2:241318-241568(-)$1	250	107	112	15.0000
c^^^^	chr16:70191623-70191868(+)$1	245	66	71	15.0000
:::ee	chr16:70193520-70193762(+)$1	242	82	87	15.0000
::FFF	chr19:54644997-54645264(+)$1	267	243	248	15.0000
:::::	chr20:36146713-36146951(-)$1	238	25	30	15.0000
GGeee	chr11:116739740-116739980(-)$1	240	79	84	15.0000
eee::	chr11:12962489-12962749(+)$1	260	110	115	15.0000
E????	chr2:85546844-85547085(-)$1	241	139	144	15.0000
DDDDa	chr15:93564963-93565207(+)$1	244	194	199	15.0000
iiiii	chr2:71213567-71213820(-)$1	253	89	94	15.0000
:::gg	chr17:62118737-62119059(-)$1	322	86	91	15.0000
==ccc	chr17:55173073-55173339(+)$1	266	155	160	15.0000
oobb3	chr20:30960186-30960433(+)$1	247	61	66	15.0000
::::e	chr3:187896255-187896542(+)$1	287	71	76	15.0000
]dddd	chr7:141463800-141464072(+)$1	272	182	187	15.0000
RRRII	chr11:116739512-116739781(-)$1	269	35	40	15.0000
hhhhh	chr2:71213452-71213749(-)$1	297	18	23	15.0000
##ccc	chr15:49517295-49517548(+)$1	253	42	47	15.0000
@@@@@	chr2:85547111-85547337(-)$1	226	161	166	15.0000
JJJJJ	chr2:32991435-32991698(+)$1	263	27	32	15.0000
2ffff	chr2:71214859-71215102(-)$1	243	195	200	15.0000
JJJJJ	chr11:12962298-12962580(+)$1	282	36	41	15.0000
iiirr	chr18:32918446-32918691(-)$1	245	105	110	15.0000
:::::	chr2:85547835-85548095(-)$1	260	253	258	15.0000
444ff	chr2:85547739-85548015(-)$1	276	173	178	15.0000
FFF::	chr2:85547685-85547915(-)$1	230	73	78	15.0000
FFF::	chr2:85547617-85547885(-)$1	268	43	48	15.0000
meeee	chr7:141464793-141465050(+)$1	257	179	184	15.0000
hh$$$	chrX:77382790-77383050(+)$1	260	84	89	15.0000
hh:::	chr18:77690179-77690416(-)$1	237	183	188	15.0000
55555	chr21:45937025-45937348(+)$1	323	77	82	15.0000
e"""c	chr11:118321290-118321599(+)$1	309	124	129	15.0000
@@@@@	chr2:85547144-85547411(-)$1	267	235	240	15.0000
===$$	chr2:138724975-138725206(+)$1	231	158	163	15.0000

#DB
((((.	chr4:1386719-1386971(+)$1	1	180	185	15.0000
.....	chr19:54645064-54645302(+)$1	1	176	181	15.0000
.((((	chr11:119171608-119171867(+)$1	1	104	109	15.0000
)))))	chr1:120262439-120262713(+)$1	1	184	189	15.0000
....(	chr2:61153921-61154200(+)$1	1	40	45	15.0000
..(((	chr7:73110748-73111013(+)$1	1	70	75	15.0000
))).)	chr1:113668479-113668743(+)$1	1	165	170	15.0000
(((.(	chr4:1386272-1386539(+)$1	1	30	35	15.0000
)))))	chr22:43398309-43398549(-)$1	1	56	61	15.0000
.((.(	chr8:59362375-59362649(+)$1	1	143	148	15.0000
)....	chr10:124146840-124147081(+)$1	1	182	187	15.0000
(....	chr1:113668121-113668371(+)$1	1	15	20	15.0000
(....	chr5:112228298-112228614(-)$1	1	293	298	15.0000
..((.	chr13:50068433-50068696(+)$1	1	129	134	15.0000
...((	chr10:72186540-72186820(+)$1	1	78	83	15.0000
.....	chr2:85547314-85547585(-)$1	1	43	48	15.0000
(((((	chr1:55352268-55352513(-)$1	1	58	63	15.0000
.....	chr2:71213950-71214226(-)$1	1	76	81	15.0000
.....	chr17:66509024-66509284(+)$1	1	17	22	15.0000
.....	chr12:66250216-66250494(+)$1	1	3	8	15.0000
.....	chr16:70191483-70191745(+)$1	1	206	211	15.0000
.....	chr3:99569627-99569901(+)$1	1	10	15	15.0000
.....	chr6:160166057-160166296(+)$1	1	204	209	15.0000
.....	chr10:124147010-124147315(+)$1	1	12	17	15.0000
.....	chr7:66105808-66106075(+)$1	1	157	162	15.0000
.....	chr1:91966694-91966948(+)$1	1	146	151	15.0000
.....	chr2:61153801-61154068(+)$1	1	160	165	15.0000
.((((	chr12:56321077-56321339(-)$1	1	154	159	15.0000
)))).	chr2:169721742-169722047(-)$1	1	126	131	15.0000
)))))	chr2:71213667-71213873(-)$1	1	142	147	15.0000
.....	chr2:241318-241568(-)$1	1	107	112	15.0000
(....	chr16:70191623-70191868(+)$1	1	66	71	15.0000
...((	chr16:70193520-70193762(+)$1	1	82	87	15.0000
..)))	chr19:54644997-54645264(+)$1	1	243	248	15.0000
.....	chr20:36146713-36146951(-)$1	1	25	30	15.0000
(((((	chr11:116739740-116739980(-)$1	1	79	84	15.0000
)))..	chr11:12962489-12962749(+)$1	1	110	115	15.0000
)....	chr2:85546844-85547085(-)$1	1	139	144	15.0000
))))(	chr15:93564963-93565207(+)$1	1	194	199	15.0000
)))))	chr2:71213567-71213820(-)$1	1	89	94	15.0000
...((	chr17:62118737-62119059(-)$1	1	86	91	15.0000
))(((	chr17:55173073-55173339(+)$1	1	155	160	15.0000
..)).	chr20:30960186-30960433(+)$1	1	61	66	15.0000
....(	chr3:187896255-187896542(+)$1	1	71	76	15.0000
.))))	chr7:141463800-141464072(+)$1	1	182	187	15.0000
...((	chr11:116739512-116739781(-)$1	1	35	40	15.0000
)))))	chr2:71213452-71213749(-)$1	1	18	23	15.0000
..(((	chr15:49517295-49517548(+)$1	1	42	47	15.0000
.....	chr2:85547111-85547337(-)$1	1	161	166	15.0000
(((((	chr2:32991435-32991698(+)$1	1	27	32	15.0000
.))))	chr2:71214859-71215102(-)$1	1	195	200	15.0000
(((((	chr11:12962298-12962580(+)$1	1	36	41	15.0000
(((..	chr18:32918446-32918691(-)$1	1	105	110	15.0000
.....	chr2:85547835-85548095(-)$1	1	253	258	15.0000
...))	chr2:85547739-85548015(-)$1	1	173	178	15.0000
(((..	chr2:85547685-85547915(-)$1	1	73	78	15.0000
(((..	chr2:85547617-85547885(-)$1	1	43	48	15.0000
.))))	chr7:141464793-141465050(+)$1	1	179	184	15.0000
((...	chrX:77382790-77383050(+)$1	1	84	89	15.0000
))...	chr18:77690179-77690416(-)$1	1	183	188	15.0000
.....	chr21:45937025-45937348(+)$1	1	77	82	15.0000
(...(	chr11:118321290-118321599(+)$1	1	124	129	15.0000
.....	chr2:85547144-85547411(-)$1	1	235	240	15.0000
(((..	chr2:138724975-138725206(+)$1	1	158	163	15.0000

#PSSM
U : 0.64	u : 0.35	
U : 0.64	u : 0.35	
C : 0.64	c : 0.35	
C : 0.64	c : 0.35	
U : 0.64	u : 0.35	

#score	960.0
#seq	64
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_UTR_m1_run2.nuc.txt

#NT
GAAGAAAAAGAAGA	chr12:76449711-76449943(-)$1	232	47	61	32.5769
gaagaggaagaaga	chr5:179151680-179151885(+)$1	205	34	48	32.2884
GAAAAAGAAGAAGC	chr1:46073038-46073298(+)$1	260	1	15	27.3846
GAGGAUGAAGAAGA	chr7:99000928-99001237(-)$1	309	193	207	28.1538
gaaggggaagaaga	chr1:16891202-16891509(-)$1	307	126	140	28.1538
GAAGAAGAGAAAGA	chr3:9487281-9487507(+)$1	226	86	100	28.3461
GAAGAAGAAGAAGA	chr12:6879241-6879471(+)$1	230	86	100	35.9423
aaagaagaaaaaga	chr17:43158909-43159176(+)$1	267	135	149	27.3846
GAAGGAGAAGAAGG	chr16:89349899-89350184(-)$1	285	258	272	27.6730
GGAGAAAAAGAAGA	chr1:46072974-46073238(+)$1	264	62	76	27.9615
GAAGAAAGAGAAGA	chr15:40488738-40488990(+)$1	252	121	135	28.0576
GAAGAAGUAGAAGA	chr12:76462588-76462873(-)$1	285	139	153	31.3269
GAAGAAGAUGAAGA	chr14:73572681-73572889(+)$1	208	30	44	32.2884
gaagaagaaagaga	chr15:93545325-93545639(+)$1	314	119	133	27.2884
gaagaagaagaaga	chr17:4575474-4575742(-)$1	268	145	159	35.9423
Caagaagaaaaaga	chr22:35661237-35661553(+)$1	316	91	105	27.3846
gaagaagaagaaga	chrX:154005025-154005286(+)$1	261	65	79	35.9423
GAAGAAAAAGAAGA	chr12:76449797-76450042(-)$1	245	146	160	32.5769
gaagaagaagaaga	chr14:102550994-102551260(-)$1	266	83	97	35.9423
GAAGAAGAUGAAGA	chr14:73572620-73572846(+)$1	226	91	105	32.2884
gaagaagaugaaga	chr4:190864254-190864502(+)$1	248	139	153	32.2884
gaagaagaggaaga	chr17:42284721-42285064(-)$1	343	147	161	32.1923
GAAGAUGAAGAAGA	chr2:232327913-232328126(-)$1	213	183	197	32.1923
gaggaagaagaaga	chr4:174253115-174253329(-)$1	214	48	62	31.9038
GGAGAAAAAGAAGA	chr1:46072903-46073174(+)$1	271	133	147	27.9615
gaagaagaagaaga	chr17:4575265-4575570(-)$1	305	114	128	35.9423
gaagaagaagaaga	chr14:102551127-102551344(-)$1	217	167	181	35.9423
gaaggaaaagaaga	chrX:154004407-154004636(+)$1	229	116	130	28.4423
gaagaggaggaaga	chr14:73577475-73577737(+)$1	262	120	134	28.5384
gaagaagaagaaga	chr17:4575402-4575628(-)$1	226	31	45	35.9423
GAAGCAGAAGAAGC	chr10:70532647-70532882(+)$1	235	178	192	27.3846
gaagaagaaaaaga	chr17:36966601-36966887(-)$1	286	65	79	32.0961
GAAGAACAAGAAGA	chr3:56647527-56647867(+)$1	340	158	172	31.9038
GAAGAAGAAAAAAA	chr16:89950931-89951166(+)$1	235	81	95	27.4807
gaagaagaagaaga	chr17:4575428-4575673(-)$1	245	76	90	35.9423
GAAGAUGAAGAAGA	chr3:142761856-142762098(+)$1	242	118	132	32.1923
gaagaagaagaaga	chr5:891652-891958(-)$1	306	140	154	35.9423
gaagaagaagaaga	chr17:4575370-4575602(-)$1	232	5	19	35.9423
GAAGAAGAAGAAGA	chr16:4910560-4910853(+)$1	293	131	145	35.9423
gaaaaagaagaaaa	chr2:203168008-203168267(+)$1	259	108	122	26.9038
GAAGAGGAAGAAGG	chr1:46072053-46072342(+)$1	289	146	160	28.1538
GAGGAAGAAGAAGC	chr15:78841079-78841424(+)$1	345	141	155	27.7692
GAAGAAAGAGAAGA	chr15:40488676-40488938(+)$1	262	183	197	28.0576
gaggaagaugaaga	chr19:10670886-10671124(-)$1	238	102	116	28.2499
GAAGAAGAUGAAGA	chr14:73572536-73572792(+)$1	256	175	189	32.2884
GAGGAAGAAGAGGA	chr2:219134009-219134351(-)$1	342	129	143	27.0961
GAAGGAGAAGAAGG	chr16:89349825-89350099(-)$1	274	173	187	27.6730
gaagaagaagaaga	chr3:184039663-184039930(+)$1	267	80	94	35.9423
GAAAAUGAAGAAGA	chr15:59205604-59205929(-)$1	325	109	123	27.7692
gaagaagaggaaga	chr2:232576552-232576784(+)$1	232	89	103	32.1923
GAAGAAAAAGAAGA	chr12:76449743-76449995(-)$1	252	99	113	32.5769

#otherMatches

#Struct PSSM
d]eeeee:::::::	chr11:3023668-3023932(-)$1	264	113	127	32.2884
!!bb$$$$$ccc!!	chr12:76449711-76449943(-)$1	232	47	61	32.5769
b22dddd:::::::	chr5:179151680-179151885(+)$1	205	34	48	32.2884
::::::::::::ff	chr1:46073038-46073298(+)$1	260	1	15	27.3846
GGG::::::::bbm	chr7:99000928-99001237(-)$1	309	193	207	28.1538
:::AKKEEEEEGGG	chr1:16891202-16891509(-)$1	307	126	140	28.1538
dd!!ggggggg===	chr3:9487281-9487507(+)$1	226	86	100	28.3461
d]bb4444eeeee]	chr12:6879241-6879471(+)$1	230	86	100	35.9423
5555bb]ffffff:	chr17:43158909-43159176(+)$1	267	135	149	27.3846
a22bb:::::::BB	chr16:89349899-89350184(-)$1	285	258	272	27.6730
::::::::::::::	chr1:46072974-46073238(+)$1	264	62	76	27.9615
yyyyyyyyyyyeee	chr15:40488738-40488990(+)$1	252	121	135	28.0576
:::ggggggg!!dd	chr12:76462588-76462873(-)$1	285	139	153	31.3269
FFKKDDDDEEEEEN	chr14:73572681-73572889(+)$1	208	30	44	32.2884
::::::::::::::	chr15:93545325-93545639(+)$1	314	119	133	27.2884
::::::::::::::	chr17:4575474-4575742(-)$1	268	145	159	35.9423
ee::::::::::::	chr22:35661237-35661553(+)$1	316	91	105	27.3846
999999ggggggg]	chrX:154005025-154005286(+)$1	261	65	79	35.9423
gggg22ddddffff	chr12:76449797-76450042(-)$1	245	146	160	32.5769
^^^^^^^^^^^^^^	chr14:102550994-102551260(-)$1	266	83	97	35.9423
GGKKDDDDEEEEEN	chr14:73572620-73572846(+)$1	226	91	105	32.2884
d!!ffffff"""bb	chr4:190864254-190864502(+)$1	248	139	153	32.2884
&&&&&ffffff"""	chr17:42284721-42285064(-)$1	343	147	161	32.1923
ZZBB::::::::::	chr2:232327913-232328126(-)$1	213	183	197	32.1923
::::::::::::::	chr4:174253115-174253329(-)$1	214	48	62	31.9038
e22ccc]bb]a]ee	chr1:46072903-46073174(+)$1	271	133	147	27.9615
::::::::::::::	chr17:4575265-4575570(-)$1	305	114	128	35.9423
^^^^^^^^^^^^^^	chr14:102551127-102551344(-)$1	217	167	181	35.9423
a]dddd::::::::	chrX:154004407-154004636(+)$1	229	116	130	28.4423
mmmbb333bb::::	chr14:73577475-73577737(+)$1	262	120	134	28.5384
::::::::::::::	chr17:4575402-4575628(-)$1	226	31	45	35.9423
b:cccpppppppcc	chr10:70532647-70532882(+)$1	235	178	192	27.3846
dd>>>>>>>>>>>>	chr17:36966601-36966887(-)$1	286	65	79	32.0961
dddd!!aqqqqqqq	chr3:56647527-56647867(+)$1	340	158	172	31.9038
eeee]ccc::::::	chr16:89950931-89951166(+)$1	235	81	95	27.4807
::::::::::::::	chr17:4575428-4575673(-)$1	245	76	90	35.9423
22ffffff::::::	chr3:142761856-142762098(+)$1	242	118	132	32.1923
::::::::::::::	chr5:891652-891958(-)$1	306	140	154	35.9423
::::::::::::::	chr17:4575370-4575602(-)$1	232	5	19	35.9423
::::::::::::::	chr16:4910560-4910853(+)$1	293	131	145	35.9423
eee22bb22bb22e	chr2:203168008-203168267(+)$1	259	108	122	26.9038
dEEEEE}FFFFFF:	chr1:46072053-46072342(+)$1	289	146	160	28.1538
:::::::::::ccc	chr15:78841079-78841424(+)$1	345	141	155	27.7692
::::::GGGGGGGY	chr15:40488676-40488938(+)$1	262	183	197	28.0576
]eeeee:FFFFFF:	chr19:10670886-10671124(-)$1	238	102	116	28.2499
::::BBYYDDDD}F	chr14:73572536-73572792(+)$1	256	175	189	32.2884
dddd333ffffff]	chr2:219134009-219134351(-)$1	342	129	143	27.0961
a22bb:::::::BB	chr16:89349825-89350099(-)$1	274	173	187	27.6730
eeee]bb22dddd]	chr3:184039663-184039930(+)$1	267	80	94	35.9423
G:::::::::::::	chr15:59205604-59205929(-)$1	325	109	123	27.7692
[ccc"""iiiiiii	chr2:232576552-232576784(+)$1	232	89	103	32.1923
88888888ccceee	chr12:76449743-76449995(-)$1	252	99	113	32.5769

#DB
).))))).......	chr11:3023668-3023932(-)$1	1	113	127	32.2884
..((.....(((..	chr12:76449711-76449943(-)$1	1	47	61	32.5769
)..)))).......	chr5:179151680-179151885(+)$1	1	34	48	32.2884
............((	chr1:46073038-46073298(+)$1	1	1	15	27.3846
(((........((.	chr7:99000928-99001237(-)$1	1	193	207	28.1538
...(..((((((((	chr1:16891202-16891509(-)$1	1	126	140	28.1538
((..((((((((((	chr3:9487281-9487507(+)$1	1	86	100	28.3461
).))....))))).	chr12:6879241-6879471(+)$1	1	86	100	35.9423
....)).)))))).	chr17:43158909-43159176(+)$1	1	135	149	27.3846
)..)).......))	chr16:89349899-89350184(-)$1	1	258	272	27.6730
..............	chr1:46072974-46073238(+)$1	1	62	76	27.9615
...........)))	chr15:40488738-40488990(+)$1	1	121	135	28.0576
...(((((((..((	chr12:76462588-76462873(-)$1	1	139	153	31.3269
((..(((((((((.	chr14:73572681-73572889(+)$1	1	30	44	32.2884
..............	chr15:93545325-93545639(+)$1	1	119	133	27.2884
..............	chr17:4575474-4575742(-)$1	1	145	159	35.9423
))............	chr22:35661237-35661553(+)$1	1	91	105	27.3846
......))))))).	chrX:154005025-154005286(+)$1	1	65	79	35.9423
))))..))))))))	chr12:76449797-76450042(-)$1	1	146	160	32.5769
..............	chr14:102550994-102551260(-)$1	1	83	97	35.9423
((..(((((((((.	chr14:73572620-73572846(+)$1	1	91	105	32.2884
(..((((((...((	chr4:190864254-190864502(+)$1	1	139	153	32.2884
.....((((((...	chr17:42284721-42285064(-)$1	1	147	161	32.1923
..))..........	chr2:232327913-232328126(-)$1	1	183	197	32.1923
..............	chr4:174253115-174253329(-)$1	1	48	62	31.9038
)..))).)).).))	chr1:46072903-46073174(+)$1	1	133	147	27.9615
..............	chr17:4575265-4575570(-)$1	1	114	128	35.9423
..............	chr14:102551127-102551344(-)$1	1	167	181	35.9423
).))))........	chrX:154004407-154004636(+)$1	1	116	130	28.4423
...))...))....	chr14:73577475-73577737(+)$1	1	120	134	28.5384
..............	chr17:4575402-4575628(-)$1	1	31	45	35.9423
).(((.......))	chr10:70532647-70532882(+)$1	1	178	192	27.3846
))............	chr17:36966601-36966887(-)$1	1	65	79	32.0961
((((..(.......	chr3:56647527-56647867(+)$1	1	158	172	31.9038
)))).)))......	chr16:89950931-89951166(+)$1	1	81	95	27.4807
..............	chr17:4575428-4575673(-)$1	1	76	90	35.9423
..))))))......	chr3:142761856-142762098(+)$1	1	118	132	32.1923
..............	chr5:891652-891958(-)$1	1	140	154	35.9423
..............	chr17:4575370-4575602(-)$1	1	5	19	35.9423
..............	chr16:4910560-4910853(+)$1	1	131	145	35.9423
)))..))..))..)	chr2:203168008-203168267(+)$1	1	108	122	26.9038
)))))).)))))).	chr1:46072053-46072342(+)$1	1	146	160	28.1538
...........(((	chr15:78841079-78841424(+)$1	1	141	155	27.7692
......))))))).	chr15:40488676-40488938(+)$1	1	183	197	28.0576
.))))).((((((.	chr19:10670886-10671124(-)$1	1	102	116	28.2499
....))..)))).)	chr14:73572536-73572792(+)$1	1	175	189	32.2884
))))...)))))).	chr2:219134009-219134351(-)$1	1	129	143	27.0961
)..)).......))	chr16:89349825-89350099(-)$1	1	173	187	27.6730
)))).))..)))).	chr3:184039663-184039930(+)$1	1	80	94	35.9423
(.............	chr15:59205604-59205929(-)$1	1	109	123	27.7692
.(((...(((((((	chr2:232576552-232576784(+)$1	1	89	103	32.1923
........))))))	chr12:76449743-76449995(-)$1	1	99	113	32.5769

#PSSM
G : 0.53	g : 0.42	a : 0.01	C : 0.01	
A : 0.49	a : 0.46	G : 0.03	
A : 0.48	a : 0.42	G : 0.05	g : 0.03	
G : 0.49	g : 0.44	A : 0.03	a : 0.01	
A : 0.48	a : 0.42	g : 0.03	G : 0.03	C : 0.01	
A : 0.42	a : 0.40	U : 0.07	g : 0.05	G : 0.03	
g : 0.44	G : 0.38	A : 0.13	a : 0.01	C : 0.01	
A : 0.48	a : 0.46	G : 0.03	U : 0.01	
A : 0.46	a : 0.36	U : 0.05	g : 0.05	u : 0.03	G : 0.01	
G : 0.49	g : 0.38	a : 0.07	A : 0.03	
A : 0.53	a : 0.44	g : 0.01	
A : 0.51	a : 0.46	G : 0.01	
G : 0.51	g : 0.44	A : 0.01	a : 0.01	
a : 0.46	A : 0.42	C : 0.05	G : 0.05	

#score	1618.0384615384603
#seq	52
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_CDS_m2_run1.nuc.txt

#NT
GGGCGGGGAGCGGGG	chr16:67199429-67199690(+)$1	261	120	135	16.4772
AAGGGGUGGGAAGAG	chr3:45730811-45731099(+)$1	288	25	40	15.1136
UGGGGAUGGGAAUGG	chr10:72503652-72503958(+)$1	306	91	106	17.9545
CGGGGGAGGGCAGCA	chr7:128480842-128481089(+)$1	247	216	231	14.6590
UGGGGUUGGGCGGGG	chr8:145693808-145694078(+)$1	270	92	107	22.8409
AUGGGGAGGGCUGGG	chr11:557749-558004(+)$1	255	78	93	17.3863
AGGAGGUGGCCAUGG	chr1:19415162-19415400(-)$1	238	196	211	14.3181
GUGGGUUGGGAAUGG	chr21:45735929-45736232(+)$1	303	91	106	15.4545
UGGGGGUGGGCAGGG	chr17:80016442-80016717(-)$1	275	101	116	26.4772
ggcgggcgggcggcg	chr7:77166748-77166983(+)$1	235	63	78	15.7954
UGGGGGAUGGAUGGG	chr12:132402869-132403140(+)$1	271	105	120	14.9999
UGGGGAUGGGGAAGG	chr6:34857006-34857331(+)$1	325	168	183	17.2727
AGGAGGGGGGCAGGU	chr14:104165106-104165382(+)$1	276	90	105	15.9090
UGGGGGUGGGCAGGG	chr16:1828219-1828486(-)$1	267	98	113	26.4772
ggggugggggcgggg	chr19:47778061-47778339(+)$1	278	44	59	19.7727
cggggggagggaggg	chr16:725959-726250(+)$1	291	68	83	16.4772
GGGAGAUGGGCAGGG	chr12:57624649-57624933(+)$1	284	144	159	20.9090
GGCAGGUGGGGAGGA	chr11:6566360-6566632(+)$1	272	86	101	14.4318
CUGGGGUGGGCAGGA	chr16:845040-845284(+)$1	244	50	65	18.5227
GGAGGUGGGGCAGGG	chr9:139904712-139904986(-)$1	274	76	91	18.5227
gggggaggggcuggg	chr9:140323182-140323436(+)$1	254	44	59	20.2272
cggggcugggcgggg	chr15:80215300-80215601(-)$1	301	136	151	22.1590
gCUGGCUGGGCAGGG	chr11:637257-637535(+)$1	278	133	148	17.6136
CCUGGGUGGGCAGGG	chr9:139904818-139905104(-)$1	286	114	129	18.5227
GGGUGGUGGGCAAUG	chr10:72468246-72468496(+)$1	250	24	39	15.5681
GGAGGGUgugugggg	chr12:132403059-132403293(+)$1	234	204	219	16.1363
GGGGGGUGAGAGGGC	chr20:60897710-60897990(-)$1	280	130	145	16.2499
ggggcgugggccggg	chr10:101379863-101380186(-)$1	323	197	212	20.7954
UGGGGGUCUGCGGGG	chr9:139250028-139250304(+)$1	276	62	77	17.3863
ggagguuggggaggu	chr15:38776644-38776902(+)$1	258	3	18	14.6590
GGCGGGGGAGCUGGG	chr19:49964846-49965122(+)$1	276	90	105	15.7954
uggggguggcuaugg	chr17:34171553-34171884(+)$1	331	18	33	15.9090
GAGUGGAGGGCAGGG	chr19:50434143-50434380(+)$1	237	170	185	17.1590
AGGCAGUGGGAGGGG	chr1:33236040-33236288(+)$1	248	110	125	14.2045
GCCGGGUGGGCUGGG	chr17:79866767-79867103(-)$1	336	144	159	18.8636
GUGGGGUGGGGCGGG	chr16:88722384-88722614(-)$1	230	106	121	19.4318
GCGGGGUGGGAGGGG	chr17:46131916-46132230(+)$1	314	40	55	20.9090
UGGGGCUGGGCCUGG	chr11:534147-534460(-)$1	313	41	56	18.5227
ggcggcggggcgggg	chr6:3259324-3259594(+)$1	270	132	147	18.2954
ugggggugggggugg	chr15:38776584-38776844(+)$1	260	23	38	20.1136
UGGGGGUCGGCGGGA	chr12:132401763-132402074(+)$1	311	141	156	17.9545
uggggcggggcgggg	chr22:51020657-51020956(-)$1	299	76	91	20.6818
GGGGGCUAGGCAGGU	chr11:61197015-61197330(-)$1	315	215	230	16.7045

#otherMatches

#Struct PSSM
b####bb[a[ccc!!	chrX:48814204-48814457(-)$1	253	10	25	16.1363
ccc:ffffff[dddd	chr16:67199429-67199690(+)$1	261	120	135	16.4772
44eeeee]bb:GGGG	chr3:45730811-45731099(+)$1	288	25	40	15.1136
hhhhdddd4444ccc	chr10:72503652-72503958(+)$1	306	91	106	17.9545
C}FFFFFF}BB:ddd	chr7:128480842-128481089(+)$1	247	216	231	14.6590
bqqqqqqqqbb333a	chr8:145693808-145694078(+)$1	270	92	107	22.8409
qqccca333gggggg	chr11:557749-558004(+)$1	255	78	93	17.3863
99999iiiiiiiii]	chr1:19415162-19415400(-)$1	238	196	211	14.3181
eeeee22eeeee]cc	chr21:45735929-45736232(+)$1	303	91	106	15.4545
gggffffffffffff	chr17:80016442-80016717(-)$1	275	101	116	26.4772
HHHHHddddbbccco	chr7:77166748-77166983(+)$1	235	63	78	15.7954
EEEE:::::ddddee	chr12:132402869-132403140(+)$1	271	105	120	14.9999
d55555eeeee22a]	chr6:34857006-34857331(+)$1	325	168	183	17.2727
22ggggggg4444==	chr14:104165106-104165382(+)$1	276	90	105	15.9090
iiiiiii"""bbddd	chr16:1828219-1828486(-)$1	267	98	113	26.4772
HHHHHHHH{BBFFFF	chr19:47778061-47778339(+)$1	278	44	59	19.7727
c!!ffffff[eeeee	chr16:725959-726250(+)$1	291	68	83	16.4772
FFKKA{DDDD{EEEE	chr12:57624649-57624933(+)$1	284	144	159	20.9090
{DDDDccc[hhhhhh	chr11:6566360-6566632(+)$1	272	86	101	14.4318
bb:FFFFFFDDDD{D	chr16:845040-845284(+)$1	244	50	65	18.5227
bb]ccc333bb::DD	chr9:139904712-139904986(-)$1	274	76	91	18.5227
::bb[ggggggg[dd	chr9:140323182-140323436(+)$1	254	44	59	20.2272
c[ccc!!ccca[fff	chr15:80215300-80215601(-)$1	301	136	151	22.1590
JJ::dddd[bblllb	chr11:637257-637535(+)$1	278	133	148	17.6136
dddddddddddllld	chr9:139904818-139905104(-)$1	286	114	129	18.5227
DDDDbb[dddd!!ee	chr10:72468246-72468496(+)$1	250	24	39	15.5681
]a22dddd]gggggg	chr12:132403059-132403293(+)$1	234	204	219	16.1363
lffffff333cccdd	chr20:60897710-60897990(-)$1	280	130	145	16.2499
ff]bbbb[ddddmmm	chr10:101379863-101380186(-)$1	323	197	212	20.7954
iiggggggg[eeeee	chr9:139250028-139250304(+)$1	276	62	77	17.3863
:::::::::::::::	chr15:38776644-38776902(+)$1	258	3	18	14.6590
bb]eeeee]ffffff	chr19:49964846-49965122(+)$1	276	90	105	15.7954
b"""ccc[eeeee[b	chr17:34171553-34171884(+)$1	331	18	33	15.9090
J______IIIIIIII	chr19:50434143-50434380(+)$1	237	170	185	17.1590
:CCC{A{HHHHHHHH	chr1:33236040-33236288(+)$1	248	110	125	14.2045
::dddd[hhhhhhhh	chr17:79866767-79867103(-)$1	336	144	159	18.8636
sseeeee]eeeee]f	chr16:88722384-88722614(-)$1	230	106	121	19.4318
e[bb[dddd[ggggg	chr17:46131916-46132230(+)$1	314	40	55	20.9090
HH{DDDDCCCCCCff	chr11:534147-534460(-)$1	313	41	56	18.5227
bffffff]cccEEEE	chr6:3259324-3259594(+)$1	270	132	147	18.2954
::::::::::ccc[a	chr15:38776584-38776844(+)$1	260	23	38	20.1136
!!eeeee"""ggggg	chr12:132401763-132402074(+)$1	311	141	156	17.9545
llldddddddd:DDD	chr22:51020657-51020956(-)$1	299	76	91	20.6818
{CCC:eeeee!!ddd	chr11:61197015-61197330(-)$1	315	215	230	16.7045

#DB
(....((.(.(((..	chrX:48814204-48814457(-)$1	1	10	25	16.1363
))).((((((.((((	chr16:67199429-67199690(+)$1	1	120	135	16.4772
..))))).)).((((	chr3:45730811-45731099(+)$1	1	25	40	15.1136
))))))))....)))	chr10:72503652-72503958(+)$1	1	91	106	17.9545
).)))))).)).(((	chr7:128480842-128481089(+)$1	1	216	231	14.6590
(........))...)	chr8:145693808-145694078(+)$1	1	92	107	22.8409
..))))...))))))	chr11:557749-558004(+)$1	1	78	93	17.3863
.....))))))))).	chr1:19415162-19415400(-)$1	1	196	211	14.3181
)))))..))))).))	chr21:45735929-45736232(+)$1	1	91	106	15.4545
)))((((((((((((	chr17:80016442-80016717(-)$1	1	101	116	26.4772
((((((((((((((.	chr7:77166748-77166983(+)$1	1	63	78	15.7954
((((.....((((((	chr12:132402869-132403140(+)$1	1	105	120	14.9999
).....)))))..).	chr6:34857006-34857331(+)$1	1	168	183	17.2727
..)))))))....))	chr14:104165106-104165382(+)$1	1	90	105	15.9090
(((((((...(((((	chr16:1828219-1828486(-)$1	1	98	113	26.4772
((((((((.((((((	chr19:47778061-47778339(+)$1	1	44	59	19.7727
(..((((((.(((((	chr16:725959-726250(+)$1	1	68	83	16.4772
((..(.((((.((((	chr12:57624649-57624933(+)$1	1	144	159	20.9090
.(((((((.((((((	chr11:6566360-6566632(+)$1	1	86	101	14.4318
)).((((((((((.(	chr16:845040-845284(+)$1	1	50	65	18.5227
)).)))...))..((	chr9:139904712-139904986(-)$1	1	76	91	18.5227
..((.(((((((.((	chr9:140323182-140323436(+)$1	1	44	59	20.2272
(.(((..((((.(((	chr15:80215300-80215601(-)$1	1	136	151	22.1590
((..((((.((...)	chr11:637257-637535(+)$1	1	133	148	17.6136
(((((((((((...)	chr9:139904818-139905104(-)$1	1	114	129	18.5227
((((((.((((..((	chr10:72468246-72468496(+)$1	1	24	39	15.5681
.)..)))).))))))	chr12:132403059-132403293(+)$1	1	204	219	16.1363
.))))))...)))))	chr20:60897710-60897990(-)$1	1	130	145	16.2499
)).))((.((((...	chr10:101379863-101380186(-)$1	1	197	212	20.7954
(((((((((.(((((	chr9:139250028-139250304(+)$1	1	62	77	17.3863
...............	chr15:38776644-38776902(+)$1	1	3	18	14.6590
)).))))).))))))	chr19:49964846-49965122(+)$1	1	90	105	15.7954
(...(((.(((((.(	chr17:34171553-34171884(+)$1	1	18	33	15.9090
)......))))))))	chr19:50434143-50434380(+)$1	1	170	185	17.1590
.(((.(.((((((((	chr1:33236040-33236288(+)$1	1	110	125	14.2045
..((((.((((((((	chr17:79866767-79867103(-)$1	1	144	159	18.8636
..))))).))))).)	chr16:88722384-88722614(-)$1	1	106	121	19.4318
(.((.((((.(((((	chr17:46131916-46132230(+)$1	1	40	55	20.9090
((.((((((((((((	chr11:534147-534460(-)$1	1	41	56	18.5227
))))))).)))((((	chr6:3259324-3259594(+)$1	1	132	147	18.2954
..........(((.(	chr15:38776584-38776844(+)$1	1	23	38	20.1136
..(((((...(((((	chr12:132401763-132402074(+)$1	1	141	156	17.9545
...)))))))).(((	chr22:51020657-51020956(-)$1	1	76	91	20.6818
.(((.(((((..(((	chr11:61197015-61197330(-)$1	1	215	230	16.7045

#PSSM
G : 0.31	U : 0.22	g : 0.15	A : 0.11	C : 0.06	u : 0.06	c : 0.04	
G : 0.52	g : 0.25	U : 0.09	C : 0.09	A : 0.04	
G : 0.59	g : 0.18	C : 0.06	c : 0.04	A : 0.04	U : 0.04	a : 0.02	
G : 0.54	g : 0.25	A : 0.09	U : 0.06	C : 0.04	
G : 0.72	g : 0.20	u : 0.02	c : 0.02	A : 0.02	
G : 0.54	g : 0.13	A : 0.06	U : 0.06	c : 0.06	C : 0.06	a : 0.02	u : 0.02	
U : 0.56	g : 0.11	u : 0.11	G : 0.09	A : 0.09	c : 0.02	
G : 0.63	g : 0.25	C : 0.04	U : 0.02	a : 0.02	A : 0.02	
G : 0.63	g : 0.25	A : 0.06	u : 0.02	U : 0.02	
G : 0.70	g : 0.25	C : 0.02	c : 0.02	
C : 0.47	A : 0.15	c : 0.15	G : 0.06	g : 0.06	u : 0.04	U : 0.02	
A : 0.40	G : 0.18	g : 0.15	U : 0.09	a : 0.06	C : 0.04	u : 0.02	c : 0.02	
G : 0.56	g : 0.22	U : 0.11	A : 0.04	u : 0.04	
G : 0.65	g : 0.25	A : 0.02	C : 0.02	c : 0.02	U : 0.02	
G : 0.56	g : 0.25	A : 0.09	U : 0.04	C : 0.02	u : 0.02	

#score	789.7727272727268
#seq	44
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_transcript_m1_run1.nuc.txt

#NT
GCUGGCC	chr20:62320418-62320652(+)$1	234	193	200	17.1029
GCUGGCG	chr17:72861664-72861917(-)$1	253	94	101	12.9117
GCUGGCC	chr1:44058196-44058483(+)$1	287	183	190	17.1029
GAUGGCC	chr20:30309284-30309529(-)$1	245	14	21	12.6176
GCUGUCC	chr16:88871974-88872215(+)$1	241	95	102	13.2058
GCUGGCC	chr9:140349504-140349749(-)$1	245	105	112	17.1029
GCUGUCC	chr17:73887909-73888166(-)$1	257	101	108	13.2058
GCUGGGC	chr20:31595489-31595706(+)$1	217	88	95	13.4999
GCCGGCC	chr20:17595904-17596150(-)$1	246	27	34	13.4999
CCUGGCC	chr16:67981351-67981601(-)$1	250	47	54	13.2794
GCUGGCC	chr8:145140339-145140582(+)$1	243	11	18	17.1029
GCCGGCC	chr3:9932443-9932670(+)$1	227	120	127	13.4999
GCAGGCC	chr20:50384666-50384913(-)$1	247	57	64	13.2058
GCUGGGC	chr2:54885124-54885358(+)$1	234	69	76	13.4999
GCUGGCG	chr19:57351679-57351908(-)$1	229	94	101	12.9117
GCUGCCC	chr22:50894470-50894722(-)$1	252	7	14	12.9852
GCCGGCC	chr19:1905367-1905617(+)$1	250	166	173	13.4999
GCUGUCC	chr2:27260494-27260743(+)$1	249	50	57	13.2058
CCUGGCC	chr16:30662891-30663156(+)$1	265	229	236	13.2794
GCUGGGC	chr17:80206453-80206757(-)$1	304	32	39	13.4999
GCUGGCC	chr12:30848303-30848571(-)$1	268	126	133	17.1029
ACUGGCC	chr17:74396061-74396308(-)$1	247	120	127	13.0588
GCUGUCC	chr3:11684702-11684984(-)$1	282	160	167	13.2058
GCCGGCC	chr9:37948455-37948721(-)$1	266	143	150	13.4999
GCUGCCC	chr20:62551750-62552013(+)$1	263	92	99	12.9852
GCAGGCC	chr22:50722827-50723048(-)$1	221	60	67	13.2058
GCCGGCC	chr19:15490282-15490522(-)$1	240	74	81	13.4999
GCUGGGC	chr1:1249991-1250293(-)$1	302	129	136	13.4999
UCUGGCC	chr13:99040660-99040926(+)$1	266	169	176	12.9117
GCUGGCU	chr3:37285054-37285314(+)$1	260	43	50	12.9852
ACUGGCC	chr7:6080386-6080596(-)$1	210	190	197	13.0588
GCUGGCC	chr9:139722921-139723166(+)$1	245	198	205	17.1029
GCUGGCU	chr14:103800511-103800774(+)$1	263	148	155	12.9852
CCUGGCC	chr20:60734939-60735183(+)$1	244	26	33	13.2794
GCUGUCC	chr19:334224-334480(-)$1	256	210	217	13.2058
GAUGGCC	chr17:36865444-36865728(+)$1	284	128	135	12.6176
GCUGGCG	chr3:13008676-13008958(-)$1	282	121	128	12.9117
GCUGUCC	chr2:85827979-85828228(-)$1	249	152	159	13.2058
GCUGGCC	chr16:1868921-1869183(-)$1	262	217	224	17.1029
GCGGGCC	chr16:57318157-57318386(-)$1	229	81	88	13.1323
GCUGGGC	chr9:127076247-127076476(+)$1	229	74	81	13.4999
CCUGGCC	chr17:76122173-76122415(-)$1	242	29	36	13.2794
CCUGGCC	chr3:58097992-58098245(+)$1	253	78	85	13.2794
GCCGGCC	chr3:9932425-9932643(+)$1	218	138	145	13.4999
GCUGGCC	chrX:131623667-131623916(-)$1	249	179	186	17.1029
GCUGGCC	chr3:133465298-133465533(+)$1	235	62	69	17.1029
GCUGGCC	chr12:110939659-110939927(-)$1	268	200	207	17.1029
GAUGGCC	chr17:79867186-79867439(-)$1	253	59	66	12.6176
GCUGGUC	chr19:12405213-12405476(-)$1	263	10	17	12.9117
GCCGGCC	chr10:120839969-120840217(-)$1	248	31	38	13.4999
GCUGGCC	chr14:78227256-78227525(-)$1	269	208	215	17.1029
GCUGGCC	chr16:88593257-88593504(+)$1	247	190	197	17.1029
GCUGGGC	chr16:46723606-46723921(+)$1	315	101	108	13.4999
GCUGGGC	chr19:2130196-2130488(-)$1	292	219	226	13.4999
GCUGCCC	chr5:73935956-73936171(-)$1	215	206	213	12.9852
GCUGGGC	chr19:36386934-36387190(-)$1	256	109	116	13.4999
GGUGGCC	chr19:42754292-42754557(-)$1	265	3	10	12.4705
GCUGGCA	chr2:74058113-74058367(+)$1	254	185	192	12.7647
CCUGGCC	chr17:3526386-3526633(-)$1	247	136	143	13.2794
GCUGGCC	chr7:33101954-33102197(-)$1	243	73	80	17.1029
GCUGGCU	chr22:42294701-42294966(+)$1	265	2	9	12.9852
GCUGGCU	chr7:127721473-127721774(+)$1	301	95	102	12.9852
GCUGGCC	chr19:14628739-14629014(-)$1	275	124	131	17.1029
GCGGGCC	chr9:74979409-74979681(-)$1	272	149	156	13.1323
GCAGGCC	chr9:135930356-135930614(+)$1	258	199	206	13.2058
gcuggcc	chr16:74359333-74359608(-)$1	275	131	138	17.1029
GCUGGGC	chr13:76412261-76412527(+)$1	266	147	154	13.4999

#otherMatches

#Struct PSSM
:::JJJJ	chr2:113300155-113300423(+)$1	268	248	255	13.0588
ccc:ddd	chr20:62320418-62320652(+)$1	234	193	200	17.1029
DDA{FFF	chr17:72861664-72861917(-)$1	253	94	101	12.9117
ngggggg	chr1:44058196-44058483(+)$1	287	183	190	17.1029
b[ccc[b	chr20:30309284-30309529(-)$1	245	14	21	12.6176
pppdddd	chr16:88871974-88872215(+)$1	241	95	102	13.2058
[ccc[bb	chr9:140349504-140349749(-)$1	245	105	112	17.1029
sssa]ff	chr17:73887909-73888166(-)$1	257	101	108	13.2058
fffffa[	chr20:31595489-31595706(+)$1	217	88	95	13.4999
:hhhhhh	chr20:17595904-17596150(-)$1	246	27	34	13.4999
EEEEEMM	chr16:67981351-67981601(-)$1	250	47	54	13.2794
GG:FFFF	chr8:145140339-145140582(+)$1	243	11	18	17.1029
###eeee	chr3:9932443-9932670(+)$1	227	120	127	13.4999
EEEEEDD	chr20:50384666-50384913(-)$1	247	57	64	13.2058
mmmmddd	chr2:54885124-54885358(+)$1	234	69	76	13.4999
ffffff:	chr19:57351679-57351908(-)$1	229	94	101	12.9117
{BB{CCC	chr22:50894470-50894722(-)$1	252	7	14	12.9852
DDEEEEE	chr19:1905367-1905617(+)$1	250	166	173	13.4999
ccc6666	chr2:27260494-27260743(+)$1	249	50	57	13.2058
ddddbbc	chr16:30662891-30663156(+)$1	265	229	236	13.2794
MMMCCC:	chr17:80206453-80206757(-)$1	304	32	39	13.4999
mmmccc]	chr12:30848303-30848571(-)$1	268	126	133	17.1029
LEEEEEd	chr17:74396061-74396308(-)$1	247	120	127	13.0588
$$$$$dd	chr3:11684702-11684984(-)$1	282	160	167	13.2058
bbbbeee	chr9:37948455-37948721(-)$1	266	143	150	13.4999
eeehhhh	chr20:62551750-62552013(+)$1	263	92	99	12.9852
eeee[cc	chr22:50722827-50723048(-)$1	221	60	67	13.2058
ddd]bbc	chr19:15490282-15490522(-)$1	240	74	81	13.4999
eeeeeee	chr1:1249991-1250293(-)$1	302	129	136	13.4999
D}CCCEE	chr13:99040660-99040926(+)$1	266	169	176	12.9117
ccc]ccc	chr3:37285054-37285314(+)$1	260	43	50	12.9852
=======	chr7:6080386-6080596(-)$1	210	190	197	13.0588
}CCCCCC	chr9:139722921-139723166(+)$1	245	198	205	17.1029
GGGGCCC	chr14:103800511-103800774(+)$1	263	148	155	12.9852
::CCC{C	chr20:60734939-60735183(+)$1	244	26	33	13.2794
EYYEEEE	chr19:334224-334480(-)$1	256	210	217	13.2058
bb[eeee	chr17:36865444-36865728(+)$1	284	128	135	12.6176
ddd:hhh	chr3:13008676-13008958(-)$1	282	121	128	12.9117
gggggg!	chr2:85827979-85828228(-)$1	249	152	159	13.2058
EEE}BBf	chr16:1868921-1869183(-)$1	262	217	224	17.1029
d]ggggg	chr16:57318157-57318386(-)$1	229	81	88	13.1323
ddddddd	chr9:127076247-127076476(+)$1	229	74	81	13.4999
uueeeee	chr17:76122173-76122415(-)$1	242	29	36	13.2794
a[fffff	chr3:58097992-58098245(+)$1	253	78	85	13.2794
###eeee	chr3:9932425-9932643(+)$1	218	138	145	13.4999
gffffff	chrX:131623667-131623916(-)$1	249	179	186	17.1029
cceeeee	chr3:133465298-133465533(+)$1	235	62	69	17.1029
mmmmggg	chr12:110939659-110939927(-)$1	268	200	207	17.1029
:::cccl	chr17:79867186-79867439(-)$1	253	59	66	12.6176
FFFF{EE	chr19:12405213-12405476(-)$1	263	10	17	12.9117
:gggggg	chr10:120839969-120840217(-)$1	248	31	38	13.4999
ffffccc	chr14:78227256-78227525(-)$1	269	208	215	17.1029
pccceee	chr16:88593257-88593504(+)$1	247	190	197	17.1029
iiiiiii	chr16:46723606-46723921(+)$1	315	101	108	13.4999
ccc!!ff	chr19:2130196-2130488(-)$1	292	219	226	13.4999
cc:::::	chr5:73935956-73936171(-)$1	215	206	213	12.9852
cc[ccc[	chr19:36386934-36387190(-)$1	256	109	116	13.4999
bb[hhhh	chr19:42754292-42754557(-)$1	265	3	10	12.4705
f[eeeee	chr2:74058113-74058367(+)$1	254	185	192	12.7647
ggbb!!c	chr17:3526386-3526633(-)$1	247	136	143	13.2794
iiiiiii	chr7:33101954-33102197(-)$1	243	73	80	17.1029
FFFFFF{	chr22:42294701-42294966(+)$1	265	2	9	12.9852
NNNEEEE	chr7:127721473-127721774(+)$1	301	95	102	12.9852
EFFFFFF	chr19:14628739-14629014(-)$1	275	124	131	17.1029
OGGGGGG	chr9:74979409-74979681(-)$1	272	149	156	13.1323
cc[dddd	chr9:135930356-135930614(+)$1	258	199	206	13.2058
g####ee	chr16:74359333-74359608(-)$1	275	131	138	17.1029
a22ccc:	chr13:76412261-76412527(+)$1	266	147	154	13.4999

#DB
...))))	chr2:113300155-113300423(+)$1	1	248	255	13.0588
))).(((	chr20:62320418-62320652(+)$1	1	193	200	17.1029
(((.(((	chr17:72861664-72861917(-)$1	1	94	101	12.9117
.))))))	chr1:44058196-44058483(+)$1	1	183	190	17.1029
(.(((.(	chr20:30309284-30309529(-)$1	1	14	21	12.6176
...))))	chr16:88871974-88872215(+)$1	1	95	102	13.2058
.(((.((	chr9:140349504-140349749(-)$1	1	105	112	17.1029
...).))	chr17:73887909-73888166(-)$1	1	101	108	13.2058
((((((.	chr20:31595489-31595706(+)$1	1	88	95	13.4999
.((((((	chr20:17595904-17596150(-)$1	1	27	34	13.4999
(((((..	chr16:67981351-67981601(-)$1	1	47	54	13.2794
((.((((	chr8:145140339-145140582(+)$1	1	11	18	17.1029
...((((	chr3:9932443-9932670(+)$1	1	120	127	13.4999
(((((((	chr20:50384666-50384913(-)$1	1	57	64	13.2058
....)))	chr2:54885124-54885358(+)$1	1	69	76	13.4999
)))))).	chr19:57351679-57351908(-)$1	1	94	101	12.9117
.((.(((	chr22:50894470-50894722(-)$1	1	7	14	12.9852
)))))))	chr19:1905367-1905617(+)$1	1	166	173	13.4999
)))....	chr2:27260494-27260743(+)$1	1	50	57	13.2058
))))(((	chr16:30662891-30663156(+)$1	1	229	236	13.2794
...(((.	chr17:80206453-80206757(-)$1	1	32	39	13.4999
...))).	chr12:30848303-30848571(-)$1	1	126	133	17.1029
.((((((	chr17:74396061-74396308(-)$1	1	120	127	13.0588
.....((	chr3:11684702-11684984(-)$1	1	160	167	13.2058
))))(((	chr9:37948455-37948721(-)$1	1	143	150	13.4999
)))))))	chr20:62551750-62552013(+)$1	1	92	99	12.9852
((((.((	chr22:50722827-50723048(-)$1	1	60	67	13.2058
))).)))	chr19:15490282-15490522(-)$1	1	74	81	13.4999
)))))))	chr1:1249991-1250293(-)$1	1	129	136	13.4999
).)))))	chr13:99040660-99040926(+)$1	1	169	176	12.9117
))).)))	chr3:37285054-37285314(+)$1	1	43	50	12.9852
)))))))	chr7:6080386-6080596(-)$1	1	190	197	13.0588
.))))))	chr9:139722921-139723166(+)$1	1	198	205	17.1029
)))))))	chr14:103800511-103800774(+)$1	1	148	155	12.9852
..(((.(	chr20:60734939-60735183(+)$1	1	26	33	13.2794
)..))))	chr19:334224-334480(-)$1	1	210	217	13.2058
((.((((	chr17:36865444-36865728(+)$1	1	128	135	12.6176
))).(((	chr3:13008676-13008958(-)$1	1	121	128	12.9117
((((((.	chr2:85827979-85828228(-)$1	1	152	159	13.2058
))).))(	chr16:1868921-1869183(-)$1	1	217	224	17.1029
).)))))	chr16:57318157-57318386(-)$1	1	81	88	13.1323
(((((((	chr9:127076247-127076476(+)$1	1	74	81	13.4999
..)))))	chr17:76122173-76122415(-)$1	1	29	36	13.2794
(.(((((	chr3:58097992-58098245(+)$1	1	78	85	13.2794
...((((	chr3:9932425-9932643(+)$1	1	138	145	13.4999
)))))))	chrX:131623667-131623916(-)$1	1	179	186	17.1029
(((((((	chr3:133465298-133465533(+)$1	1	62	69	17.1029
....)))	chr12:110939659-110939927(-)$1	1	200	207	17.1029
...(((.	chr17:79867186-79867439(-)$1	1	59	66	12.6176
((((.((	chr19:12405213-12405476(-)$1	1	10	17	12.9117
.((((((	chr10:120839969-120840217(-)$1	1	31	38	13.4999
(((((((	chr14:78227256-78227525(-)$1	1	208	215	17.1029
.))))))	chr16:88593257-88593504(+)$1	1	190	197	17.1029
)))))))	chr16:46723606-46723921(+)$1	1	101	108	13.4999
(((..((	chr19:2130196-2130488(-)$1	1	219	226	13.4999
)).....	chr5:73935956-73936171(-)$1	1	206	213	12.9852
((.(((.	chr19:36386934-36387190(-)$1	1	109	116	13.4999
((.((((	chr19:42754292-42754557(-)$1	1	3	10	12.4705
(.(((((	chr2:74058113-74058367(+)$1	1	185	192	12.7647
((((..(	chr17:3526386-3526633(-)$1	1	136	143	13.2794
)))))))	chr7:33101954-33102197(-)$1	1	73	80	17.1029
((((((.	chr22:42294701-42294966(+)$1	1	2	9	12.9852
...((((	chr7:127721473-127721774(+)$1	1	95	102	12.9852
)((((((	chr19:14628739-14629014(-)$1	1	124	131	17.1029
.((((((	chr9:74979409-74979681(-)$1	1	149	156	13.1323
((.((((	chr9:135930356-135930614(+)$1	1	199	206	13.2058
(....((	chr16:74359333-74359608(-)$1	1	131	138	17.1029
)..))).	chr13:76412261-76412527(+)$1	1	147	154	13.4999

#PSSM
G : 0.83	C : 0.08	A : 0.04	U : 0.01	g : 0.01	
C : 0.92	A : 0.04	G : 0.01	c : 0.01	
U : 0.80	C : 0.10	A : 0.04	G : 0.02	u : 0.01	
G : 0.98	g : 0.01	
G : 0.85	U : 0.08	C : 0.04	g : 0.01	
C : 0.83	G : 0.13	U : 0.01	c : 0.01	
C : 0.86	U : 0.05	G : 0.04	A : 0.01	c : 0.01	

#score	955.0588235294109
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_UTR_m3_run1.nuc.txt

#NT
acacaugcaugcacacaaacg	chr13:113539263-113539505(+)$1	242	79	100	33.5833
acacguacgcacacacgcaca	chr4:1019319-1019559(+)$1	240	43	64	34.2500
acacguacacacacacaaaug	chr16:4740530-4740802(+)$1	272	22	43	34.0000
acacacacacguacacacaUC	chrX:118750843-118751075(-)$1	232	3	24	36.0000
acacacacacgcagacaugcu	chr4:1019789-1020085(+)$1	296	7	28	34.3333
ACACAUACAUACACAUACACA	chr17:37417404-37417663(-)$1	259	93	114	40.5833
acacacacacacacacacaca	chr7:128498605-128498842(+)$1	237	25	46	48.1666
acacacacacgcacacguaca	chr13:113539656-113539966(+)$1	310	1	22	39.5000
acacauacauauacacaugca	chr21:46915826-46916036(+)$1	210	41	62	36.9166
acacacacacacacacacaca	chr17:38296478-38296751(+)$1	273	92	113	48.1666
AUACACACAUGCACACACACA	chr4:107269939-107270273(+)$1	334	102	123	39.7500
acacacacacaaacacacaca	chr17:4619009-4619264(+)$1	255	0	21	44.2500
ucccauacacucacacacaca	chr10:111967270-111967555(+)$1	285	126	147	35.7500
gcacagacacacacacacagg	chr22:20052434-20052651(+)$1	217	170	191	35.9166
acacacacacacacacacUCU	chr19:44111429-44111722(+)$1	293	141	162	41.6666
gcacagacacacacacacagg	chr22:20052489-20052742(+)$1	253	115	136	35.9166
gcacagacacacacacacagg	chr22:20052451-20052689(+)$1	238	153	174	35.9166
acacacacacacacacacaca	chr3:38534164-38534482(+)$1	318	110	131	48.1666
auacagacacccacacacaca	chr17:56405733-56406033(-)$1	300	265	286	39.6666
acacauacacgcacacacaca	chr21:46915421-46915651(+)$1	230	202	223	46.3333
acacacacacacacacacaca	chr16:20708902-20709159(+)$1	257	0	21	48.1666
ACACACGCACGCACACAUGCA	chr4:1019990-1020222(+)$1	232	16	37	37.4166
acacaugcacacacacacgca	chr13:113539579-113539817(+)$1	238	70	91	41.3333
auacacacacacacacacaca	chr22:38169842-38170129(+)$1	287	148	169	44.1666
acacacacacacagacacaca	chr4:1019078-1019365(+)$1	287	208	229	43.9166
ACACACACACGCACCCUCACC	chr17:56405392-56405649(-)$1	257	34	55	33.6666
acacacacacacacacacacG	chr3:45636215-45636473(+)$1	258	101	122	45.5000
acacguacacacacacaaaug	chr16:4740458-4740730(+)$1	272	94	115	34.0000
acacauacacgcacacacaca	chr21:46915618-46915835(+)$1	217	5	26	46.3333
acacauacauauacacaugca	chr21:46915796-46916016(+)$1	220	71	92	36.9166
acacauacauauacacaugca	chr21:46915836-46916056(+)$1	220	31	52	36.9166
acacacacacacacacacaca	chr12:56414873-56415264(+)$1	391	206	227	48.1666
acacacacacggacacacaca	chr17:4618845-4619209(+)$1	364	6	27	42.5000
acacauacacgcacacacaca	chr21:46915451-46915746(+)$1	295	172	193	46.3333
acacacacucacacacaugca	chr12:54105405-54105688(-)$1	283	1	22	38.5000
ucacauacagacacacacaua	chr3:38183659-38183982(+)$1	323	119	140	36.1666
acacauacauauacacaugca	chr21:46915724-46915952(+)$1	228	143	164	36.9166
gcacagacacacacacacagg	chr22:20052395-20052634(+)$1	239	209	230	35.9166
ACACAUACAUGCACAUAGACA	chr9:94972889-94973179(-)$1	290	145	166	35.5000
acacacacacacacacacaca	chr1:206635112-206635461(+)$1	349	133	154	48.1666
acacauacacacauacacaca	chr17:4618708-4619045(+)$1	337	81	102	43.5000
acacauacacgcacacacaca	chr21:46915609-46915818(+)$1	209	14	35	46.3333
acacauacacgcacacacaca	chr21:46915548-46915806(+)$1	258	75	96	46.3333
auacagacacccacacacaca	chr17:56405583-56405828(-)$1	245	60	81	39.6666
acacauacacacacacacaca	chr9:34634651-34634901(-)$1	250	72	93	48.0000
ACACAGAAACAAACACACACG	chr11:72432952-72433223(-)$1	271	58	79	35.1666
acacacacacacacacacaca	chr7:128498535-128498766(+)$1	231	95	116	48.1666
acacaugcacacacacacgca	chr13:113539511-113539770(+)$1	259	138	159	41.3333
acacauacauauacacaugca	chr21:46915686-46915917(+)$1	231	181	202	36.9166
auacagacacccacacacaca	chr17:56405667-56405933(-)$1	266	165	186	39.6666
acacccacacacacacacaca	chr17:56405546-56405766(-)$1	220	4	25	43.5833
acacacacacacacacacaca	chr7:128498566-128498805(+)$1	239	64	85	48.1666
acacacacacgcagacaugcu	chr4:1019742-1019989(+)$1	247	54	75	34.3333
acacacacacgcagacaugcu	chr4:1019599-1019848(+)$1	249	197	218	34.3333
acacacacacacacacacUAU	chr13:30779985-30780204(-)$1	219	124	145	37.5833
acacaugcaugcacacaaacg	chr13:113539146-113539391(+)$1	245	196	217	33.5833
acacauacauauacacaugca	chr21:46915856-46916087(+)$1	231	11	32	36.9166
acacacacacacacacacacU	chr16:67209797-67210092(-)$1	295	115	136	45.1666
auacacacaugcacacacaua	chr13:113539845-113540109(+)$1	264	129	150	36.0000

#otherMatches

#Struct PSSM
mmmccc333ffffff22dddd	chr21:46915822-46916026(+)$1	204	45	66	36.9166
uuuuuubb]eeeee4444iii	chr13:113539263-113539505(+)$1	242	79	100	33.5833
2eeeee::bboooooobb:::	chr4:1019319-1019559(+)$1	240	43	64	34.2500
ooodddd::::::::::::dd	chr16:4740530-4740802(+)$1	272	22	43	34.0000
DD{GGGGGGG:::::::::::	chrX:118750843-118751075(-)$1	232	3	24	36.0000
::::::::::cccmmmmccc=	chr4:1019789-1020085(+)$1	296	7	28	34.3333
fdddd[bb+++++++++++++	chr17:37417404-37417663(-)$1	259	93	114	40.5833
:::::::::::::::::::::	chr7:128498605-128498842(+)$1	237	25	46	48.1666
:::::::::::::eeeeevvv	chr13:113539656-113539966(+)$1	310	1	22	39.5000
mmmccc333ffffff22dddd	chr21:46915826-46916036(+)$1	210	41	62	36.9166
^^^^^^^^^^^^^^^^^^^^^	chr17:38296478-38296751(+)$1	273	92	113	48.1666
::::::GGGGGGG::::::::	chr4:107269939-107270273(+)$1	334	102	123	39.7500
:::::::::::::::::::::	chr17:4619009-4619264(+)$1	255	0	21	44.2500
BBDDDD:::::::::::::::	chr10:111967270-111967555(+)$1	285	126	147	35.7500
fffff88888888eeeee22f	chr22:20052434-20052651(+)$1	217	170	191	35.9166
::::::::::::::::::ddd	chr19:44111429-44111722(+)$1	293	141	162	41.6666
fffff88888888eeeee22f	chr22:20052489-20052742(+)$1	253	115	136	35.9166
fffff88888888eeeee22f	chr22:20052451-20052689(+)$1	238	153	174	35.9166
:::::::BB{BBKKDDDD{CC	chr3:38534164-38534482(+)$1	318	110	131	48.1666
:::::::::::::::::::::	chr17:56405733-56406033(-)$1	300	265	286	39.6666
hhhhhh::::CCC::::::::	chr21:46915421-46915651(+)$1	230	202	223	46.3333
::::::::::::::::::bb!	chr16:20708902-20709159(+)$1	257	0	21	48.1666
qqccc]ccc:FFFFFF{EEEE	chr4:1019990-1020222(+)$1	232	16	37	37.4166
333ggggggg::::::::::F	chr13:113539579-113539817(+)$1	238	70	91	41.3333
:::::::::::::::::::::	chr22:38169842-38170129(+)$1	287	148	169	44.1666
uuuuuuuuuuucccGGGGGGG	chr4:1019078-1019365(+)$1	287	208	229	43.9166
::::::::::bb[bbqqqqqq	chr17:56405392-56405649(-)$1	257	34	55	33.6666
:::::::::::::::::::::	chr3:45636215-45636473(+)$1	258	101	122	45.5000
ooodddd::::::::::::dd	chr16:4740458-4740730(+)$1	272	94	115	34.0000
hhhhhh####ddddwwwwwww	chr21:46915618-46915835(+)$1	217	5	26	46.3333
mmmccc333ffffff22dddd	chr21:46915796-46916016(+)$1	220	71	92	36.9166
mmmccc333ffffff22dddd	chr21:46915836-46916056(+)$1	220	31	52	36.9166
^^^^^^^^^^^^^^^^^^^^^	chr12:56414873-56415264(+)$1	391	206	227	48.1666
:::::::::::::::::::::	chr17:4618845-4619209(+)$1	364	6	27	42.5000
c:::::::::GGGGGGG\\\\	chr21:46915451-46915746(+)$1	295	172	193	46.3333
::::::::::::::::::CCC	chr12:54105405-54105688(-)$1	283	1	22	38.5000
:::::::::::::::::::::	chr3:38183659-38183982(+)$1	323	119	140	36.1666
mmmccc333ffffff22dddd	chr21:46915724-46915952(+)$1	228	143	164	36.9166
fffff88888888eeeee22f	chr22:20052395-20052634(+)$1	239	209	230	35.9166
'''bb!!bb[cccdddd"""h	chr9:94972889-94973179(-)$1	290	145	166	35.5000
^^^^^^^^^^^^^^^^^^^^^	chr1:206635112-206635461(+)$1	349	133	154	48.1666
:::::::::::::::::::::	chr17:4618708-4619045(+)$1	337	81	102	43.5000
sssssssssccc:::::::::	chr21:46915609-46915818(+)$1	209	14	35	46.3333
sssssssssccc:::::cccq	chr21:46915548-46915806(+)$1	258	75	96	46.3333
&&&dddd"""ccc^^^^^^^^	chr17:56405583-56405828(-)$1	245	60	81	39.6666
:::::::::::::::::::::	chr9:34634651-34634901(-)$1	250	72	93	48.0000
rrrrrrrccc:::::::::::	chr11:72432952-72433223(-)$1	271	58	79	35.1666
:::::::::::::::::::::	chr7:128498535-128498766(+)$1	231	95	116	48.1666
333ggggggg::::::cccmm	chr13:113539511-113539770(+)$1	259	138	159	41.3333
mmmccc333ffffff22dddd	chr21:46915686-46915917(+)$1	231	181	202	36.9166
:::::::::::::::::::::	chr17:56405667-56405933(-)$1	266	165	186	39.6666
d"""ccc^^^^^^^^^^^^^^	chr17:56405546-56405766(-)$1	220	4	25	43.5833
:::::::::::::::::::::	chr7:128498566-128498805(+)$1	239	64	85	48.1666
::::::::::cccmmmmccc=	chr4:1019742-1019989(+)$1	247	54	75	34.3333
ttttttttttbbeeeeeCCCJ	chr4:1019599-1019848(+)$1	249	197	218	34.3333
^^^^^^^^^^^^^^^^^^^^^	chr13:30779985-30780204(-)$1	219	124	145	37.5833
eeee[bb!!eeeeeooooooe	chr13:113539146-113539391(+)$1	245	196	217	33.5833
::::::::::::::CCC{CCC	chr21:46915856-46916087(+)$1	231	11	32	36.9166
:::::::::::::::::::::	chr16:67209797-67210092(-)$1	295	115	136	45.1666
qqqqqqqeeeee:::eeeeeq	chr13:113539845-113540109(+)$1	264	129	150	36.0000

#DB
...)))...))))))..))))	chr21:46915822-46916026(+)$1	1	45	66	36.9166
......)).)))))....)))	chr13:113539263-113539505(+)$1	1	79	100	33.5833
.)))))..((......))...	chr4:1019319-1019559(+)$1	1	43	64	34.2500
...))))............((	chr16:4740530-4740802(+)$1	1	22	43	34.0000
((.(((((((...........	chrX:118750843-118751075(-)$1	1	3	24	36.0000
..........(((....)))(	chr4:1019789-1020085(+)$1	1	7	28	34.3333
(((((.((.............	chr17:37417404-37417663(-)$1	1	93	114	40.5833
.....................	chr7:128498605-128498842(+)$1	1	25	46	48.1666
.............(((((...	chr13:113539656-113539966(+)$1	1	1	22	39.5000
...)))...))))))..))))	chr21:46915826-46916036(+)$1	1	41	62	36.9166
.....................	chr17:38296478-38296751(+)$1	1	92	113	48.1666
......(((((((........	chr4:107269939-107270273(+)$1	1	102	123	39.7500
.....................	chr17:4619009-4619264(+)$1	1	0	21	44.2500
))))))...............	chr10:111967270-111967555(+)$1	1	126	147	35.7500
)))))........)))))..)	chr22:20052434-20052651(+)$1	1	170	191	35.9166
..................(((	chr19:44111429-44111722(+)$1	1	141	162	41.6666
)))))........)))))..)	chr22:20052489-20052742(+)$1	1	115	136	35.9166
)))))........)))))..)	chr22:20052451-20052689(+)$1	1	153	174	35.9166
.......((.((..((((.((	chr3:38534164-38534482(+)$1	1	110	131	48.1666
.....................	chr17:56405733-56406033(-)$1	1	265	286	39.6666
))))))....)))........	chr21:46915421-46915651(+)$1	1	202	223	46.3333
..................((.	chr16:20708902-20709159(+)$1	1	0	21	48.1666
..))).))).((((((.((((	chr4:1019990-1020222(+)$1	1	16	37	37.4166
...)))))))..........(	chr13:113539579-113539817(+)$1	1	70	91	41.3333
.....................	chr22:38169842-38170129(+)$1	1	148	169	44.1666
...........))))))))))	chr4:1019078-1019365(+)$1	1	208	229	43.9166
..........((.((......	chr17:56405392-56405649(-)$1	1	34	55	33.6666
.....................	chr3:45636215-45636473(+)$1	1	101	122	45.5000
...))))............((	chr16:4740458-4740730(+)$1	1	94	115	34.0000
((((((....((((.......	chr21:46915618-46915835(+)$1	1	5	26	46.3333
...)))...))))))..))))	chr21:46915796-46916016(+)$1	1	71	92	36.9166
...)))...))))))..))))	chr21:46915836-46916056(+)$1	1	31	52	36.9166
.....................	chr12:56414873-56415264(+)$1	1	206	227	48.1666
.....................	chr17:4618845-4619209(+)$1	1	6	27	42.5000
).........)))))))....	chr21:46915451-46915746(+)$1	1	172	193	46.3333
..................(((	chr12:54105405-54105688(-)$1	1	1	22	38.5000
.....................	chr3:38183659-38183982(+)$1	1	119	140	36.1666
...)))...))))))..))))	chr21:46915724-46915952(+)$1	1	143	164	36.9166
)))))........)))))..)	chr22:20052395-20052634(+)$1	1	209	230	35.9166
...((..((.(((((((...(	chr9:94972889-94973179(-)$1	1	145	166	35.5000
.....................	chr1:206635112-206635461(+)$1	1	133	154	48.1666
.....................	chr17:4618708-4619045(+)$1	1	81	102	43.5000
.........))).........	chr21:46915609-46915818(+)$1	1	14	35	46.3333
.........))).....(((.	chr21:46915548-46915806(+)$1	1	75	96	46.3333
...((((...(((........	chr17:56405583-56405828(-)$1	1	60	81	39.6666
.....................	chr9:34634651-34634901(-)$1	1	72	93	48.0000
.......)))...........	chr11:72432952-72433223(-)$1	1	58	79	35.1666
.....................	chr7:128498535-128498766(+)$1	1	95	116	48.1666
...)))))))......(((..	chr13:113539511-113539770(+)$1	1	138	159	41.3333
...)))...))))))..))))	chr21:46915686-46915917(+)$1	1	181	202	36.9166
.....................	chr17:56405667-56405933(-)$1	1	165	186	39.6666
(...(((..............	chr17:56405546-56405766(-)$1	1	4	25	43.5833
.....................	chr7:128498566-128498805(+)$1	1	64	85	48.1666
..........(((....)))(	chr4:1019742-1019989(+)$1	1	54	75	34.3333
..........)))))))))))	chr4:1019599-1019848(+)$1	1	197	218	34.3333
.....................	chr13:30779985-30780204(-)$1	1	124	145	37.5833
((((.((..(((((......)	chr13:113539146-113539391(+)$1	1	196	217	33.5833
..............(((.(((	chr21:46915856-46916087(+)$1	1	11	32	36.9166
.....................	chr16:67209797-67210092(-)$1	1	115	136	45.1666
.......)))))...(((((.	chr13:113539845-113540109(+)$1	1	129	150	36.0000

#PSSM
a : 0.80	A : 0.09	g : 0.06	u : 0.03	
c : 0.81	C : 0.08	u : 0.08	U : 0.01	
a : 0.88	A : 0.09	c : 0.01	
c : 0.90	C : 0.09	
a : 0.83	A : 0.09	g : 0.05	c : 0.01	
c : 0.39	u : 0.38	g : 0.11	C : 0.05	U : 0.03	G : 0.01	
a : 0.83	A : 0.08	g : 0.06	G : 0.01	
c : 0.90	C : 0.08	A : 0.01	
a : 0.86	A : 0.09	g : 0.01	u : 0.01	
c : 0.71	u : 0.16	U : 0.05	C : 0.05	g : 0.01	
a : 0.60	g : 0.23	G : 0.06	c : 0.05	A : 0.03	u : 0.01	
c : 0.73	u : 0.13	C : 0.08	a : 0.01	g : 0.01	A : 0.01	
a : 0.90	A : 0.09	
c : 0.81	C : 0.09	g : 0.06	u : 0.01	
a : 0.90	A : 0.08	C : 0.01	
c : 0.90	C : 0.06	U : 0.03	
a : 0.86	A : 0.08	g : 0.03	U : 0.01	
c : 0.63	u : 0.19	a : 0.06	C : 0.06	U : 0.01	G : 0.01	
a : 0.65	g : 0.21	A : 0.08	U : 0.03	G : 0.01	
c : 0.71	C : 0.11	u : 0.06	g : 0.06	U : 0.01	A : 0.01	
a : 0.63	g : 0.13	A : 0.06	u : 0.05	U : 0.05	C : 0.03	G : 0.03	

#score	2417.0000000000027
#seq	60
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_UTR_m3_run2.nuc.txt

#NT
CCU	chr3:49060467-49060752(+)$1	285	7	10	9.0000
CCU	chr20:20022988-20023230(-)$1	242	12	15	9.0000
CCU	chr17:61790666-61790983(-)$1	317	20	23	9.0000
CCU	chr14:24606628-24606831(+)$1	203	26	29	9.0000
CCU	chr15:91503470-91503865(+)$1	395	149	152	9.0000
CCU	chr8:22941825-22942199(+)$1	374	10	13	9.0000
CCU	chr5:137521940-137522221(+)$1	281	23	26	9.0000
CCU	chr20:34435192-34435456(+)$1	264	17	20	9.0000
CCU	chr2:112656170-112656433(+)$1	263	174	177	9.0000
CCU	chr15:77239702-77239959(+)$1	257	164	167	9.0000
CCU	chr5:148880442-148880855(-)$1	413	138	141	9.0000
CCU	chr3:184041096-184041333(+)$1	237	18	21	9.0000
CCU	chr1:180991724-180992009(-)$1	285	46	49	9.0000
CCU	chr7:73010484-73010702(-)$1	218	54	57	9.0000
CCU	chr2:130910566-130910824(-)$1	258	21	24	9.0000
CCU	chr17:48627984-48628233(+)$1	249	12	15	9.0000
CCU	chr9:6420866-6421147(+)$1	281	61	64	9.0000
CCU	chr4:17811965-17812284(-)$1	319	23	26	9.0000
CCU	chr5:75893271-75893516(+)$1	245	84	87	9.0000
CCU	chr5:137500707-137500955(-)$1	248	71	74	9.0000
CCU	chr1:33117534-33117751(+)$1	217	48	51	9.0000
CCU	chr2:113330053-113330335(+)$1	282	30	33	9.0000
CCU	chr2:27886149-27886406(-)$1	257	40	43	9.0000
CCU	chr1:46080583-46080879(+)$1	296	134	137	9.0000
CCU	chr15:91537539-91537798(-)$1	259	120	123	9.0000
CCU	chr14:53385889-53386173(-)$1	284	54	57	9.0000
CCU	chr20:62612461-62612721(+)$1	260	63	66	9.0000
CCU	chr5:140022445-140022714(+)$1	269	35	38	9.0000
CCU	chr16:15129793-15130041(+)$1	248	20	23	9.0000
CCU	chr6:24775199-24775424(+)$1	225	76	79	9.0000
CCU	chr9:36204021-36204275(+)$1	254	5	8	9.0000
CCU	chr17:37026384-37026611(+)$1	227	212	215	9.0000
CCU	chr17:26906965-26907238(-)$1	273	39	42	9.0000
CCU	chr22:44335772-44335990(+)$1	218	190	193	9.0000
CCU	chr14:21679466-21679702(-)$1	236	95	98	9.0000
CCU	chrX:122744687-122744913(-)$1	226	12	15	9.0000
CCU	chr20:2967324-2967557(+)$1	233	0	3	9.0000
CCU	chr19:19135974-19136218(-)$1	244	143	146	9.0000
CCU	chr2:48706973-48707193(+)$1	220	84	87	9.0000
CCU	chr7:150037506-150037803(-)$1	297	7	10	9.0000
CCU	chr3:51426285-51426569(+)$1	284	33	36	9.0000
CCU	chr6:31498455-31498707(-)$1	252	78	81	9.0000
CCU	chr5:68616146-68616492(-)$1	346	58	61	9.0000
CCU	chr16:30773694-30773979(+)$1	285	116	119	9.0000
CCU	chr6:111726578-111726841(-)$1	263	57	60	9.0000
CCU	chr1:145299784-145300047(+)$1	263	90	93	9.0000
CCU	chr12:64803643-64803901(+)$1	258	134	137	9.0000
CCU	chr11:74644742-74645019(-)$1	277	69	72	9.0000
CCU	chr10:79580821-79581099(-)$1	278	7	10	9.0000
CCU	chr17:46052778-46053035(+)$1	257	5	8	9.0000
CCU	chr3:50098815-50099060(+)$1	245	72	75	9.0000
CCU	chr2:74588561-74588810(-)$1	249	10	13	9.0000
CCU	chr5:891172-891497(-)$1	325	6	9	9.0000
CCU	chr17:7216657-7216887(-)$1	230	28	31	9.0000
CCU	chr3:52561767-52562037(-)$1	270	27	30	9.0000
CCU	chr17:40991253-40991498(+)$1	245	39	42	9.0000
CCU	chr6:31731942-31732232(+)$1	290	93	96	9.0000
CCU	chr2:209169526-209169772(+)$1	246	1	4	9.0000
CCU	chr4:2628162-2628403(+)$1	241	2	5	9.0000
CCU	chr19:16770668-16770913(-)$1	245	6	9	9.0000
CCU	chr11:63719820-63720154(+)$1	334	9	12	9.0000
CCU	chr1:169080525-169080796(+)$1	271	89	92	9.0000
CCU	chr14:102547899-102548135(-)$1	236	41	44	9.0000
CCU	chr20:57246246-57246452(+)$1	206	61	64	9.0000
CCU	chr3:184039255-184039479(+)$1	224	52	55	9.0000
CCU	chr8:25252958-25253225(+)$1	267	14	17	9.0000
CCU	chr19:8538985-8539214(+)$1	229	8	11	9.0000
CCU	chr1:97272372-97272613(+)$1	241	27	30	9.0000
ccu	chr17:48629246-48629524(+)$1	278	16	19	9.0000
CCU	chr5:134734703-134734964(-)$1	261	178	181	9.0000
CCU	chr5:74077631-74077867(-)$1	236	46	49	9.0000
CCU	chr19:19033047-19033323(+)$1	276	3	6	9.0000
CCU	chr11:118888129-118888351(-)$1	222	157	160	9.0000
ccu	chr18:77730439-77730692(+)$1	253	7	10	9.0000
CCU	chr22:22313914-22314205(-)$1	291	24	27	9.0000
CCU	chr14:23946653-23946884(+)$1	231	67	70	9.0000
CCU	chr3:49052448-49052700(+)$1	252	28	31	9.0000
CCU	chr22:22042943-22043200(+)$1	257	27	30	9.0000
CCU	chr1:11900189-11900438(+)$1	249	5	8	9.0000
CCU	chr19:2233906-2234135(-)$1	229	63	66	9.0000
CCU	chr6:155578745-155579019(-)$1	274	56	59	9.0000
CCU	chr20:20016791-20017049(-)$1	258	103	106	9.0000
CCU	chr10:24508565-24508946(+)$1	381	56	59	9.0000
CCU	chr14:23237169-23237407(+)$1	238	6	9	9.0000
ccu	chr15:67835546-67835870(+)$1	324	0	3	9.0000
CCU	chr7:11068236-11068544(+)$1	308	92	95	9.0000
CCU	chr2:135809901-135810155(+)$1	254	9	12	9.0000
CCU	chr22:44333014-44333251(+)$1	237	30	33	9.0000
ccu	chr14:24608840-24609076(-)$1	236	12	15	9.0000
CCU	chr19:10229708-10229947(-)$1	239	32	35	9.0000
CCU	chr18:54305474-54305771(-)$1	297	4	7	9.0000
ccu	chr20:60715881-60716095(-)$1	214	0	3	9.0000
CCU	chr9:102888641-102888924(+)$1	283	15	18	9.0000
CCU	chr19:50364936-50365206(-)$1	270	27	30	9.0000
CCU	chr12:120659327-120659660(-)$1	333	92	95	9.0000
CCU	chr2:27719686-27719931(+)$1	245	130	133	9.0000
CCU	chr2:61411746-61411960(+)$1	214	35	38	9.0000

#otherMatches

#Struct PSSM
:::	chr2:238483948-238484188(-)$1	240	12	15	9.0000
EEE	chr3:49060467-49060752(+)$1	285	7	10	9.0000
ooo	chr20:20022988-20023230(-)$1	242	12	15	9.0000
FFF	chr17:61790666-61790983(-)$1	317	20	23	9.0000
DDD	chr14:24606628-24606831(+)$1	203	26	29	9.0000
ff:	chr15:91503470-91503865(+)$1	395	149	152	9.0000
dd:	chr8:22941825-22942199(+)$1	374	10	13	9.0000
DDD	chr5:137521940-137522221(+)$1	281	23	26	9.0000
ggg	chr20:34435192-34435456(+)$1	264	17	20	9.0000
ga[	chr2:112656170-112656433(+)$1	263	174	177	9.0000
ggg	chr15:77239702-77239959(+)$1	257	164	167	9.0000
ee4	chr5:148880442-148880855(-)$1	413	138	141	9.0000
&&&	chr3:184041096-184041333(+)$1	237	18	21	9.0000
:dd	chr1:180991724-180992009(-)$1	285	46	49	9.0000
eem	chr7:73010484-73010702(-)$1	218	54	57	9.0000
ooo	chr2:130910566-130910824(-)$1	258	21	24	9.0000
fff	chr17:48627984-48628233(+)$1	249	12	15	9.0000
JJJ	chr9:6420866-6421147(+)$1	281	61	64	9.0000
JJJ	chr4:17811965-17812284(-)$1	319	23	26	9.0000
ddd	chr5:75893271-75893516(+)$1	245	84	87	9.0000
]dd	chr5:137500707-137500955(-)$1	248	71	74	9.0000
qqq	chr1:33117534-33117751(+)$1	217	48	51	9.0000
ggg	chr2:113330053-113330335(+)$1	282	30	33	9.0000
EEE	chr2:27886149-27886406(-)$1	257	40	43	9.0000
fff	chr1:46080583-46080879(+)$1	296	134	137	9.0000
eee	chr15:91537539-91537798(-)$1	259	120	123	9.0000
hmm	chr14:53385889-53386173(-)$1	284	54	57	9.0000
c22	chr20:62612461-62612721(+)$1	260	63	66	9.0000
g]d	chr5:140022445-140022714(+)$1	269	35	38	9.0000
[hh	chr16:15129793-15130041(+)$1	248	20	23	9.0000
i##	chr6:24775199-24775424(+)$1	225	76	79	9.0000
fff	chr9:36204021-36204275(+)$1	254	5	8	9.0000
JJJ	chr17:37026384-37026611(+)$1	227	212	215	9.0000
eee	chr17:26906965-26907238(-)$1	273	39	42	9.0000
EYY	chr22:44335772-44335990(+)$1	218	190	193	9.0000
ccc	chr14:21679466-21679702(-)$1	236	95	98	9.0000
ppp	chrX:122744687-122744913(-)$1	226	12	15	9.0000
:::	chr20:2967324-2967557(+)$1	233	0	3	9.0000
mdd	chr19:19135974-19136218(-)$1	244	143	146	9.0000
fff	chr2:48706973-48707193(+)$1	220	84	87	9.0000
fff	chr7:150037506-150037803(-)$1	297	7	10	9.0000
GGG	chr3:51426285-51426569(+)$1	284	33	36	9.0000
fff	chr6:31498455-31498707(-)$1	252	78	81	9.0000
{BB	chr5:68616146-68616492(-)$1	346	58	61	9.0000
eee	chr16:30773694-30773979(+)$1	285	116	119	9.0000
b55	chr6:111726578-111726841(-)$1	263	57	60	9.0000
ecc	chr1:145299784-145300047(+)$1	263	90	93	9.0000
c##	chr12:64803643-64803901(+)$1	258	134	137	9.0000
fff	chr11:74644742-74645019(-)$1	277	69	72	9.0000
fff	chr10:79580821-79581099(-)$1	278	7	10	9.0000
GGG	chr17:46052778-46053035(+)$1	257	5	8	9.0000
bb!	chr3:50098815-50099060(+)$1	245	72	75	9.0000
::c	chr2:74588561-74588810(-)$1	249	10	13	9.0000
KFF	chr5:891172-891497(-)$1	325	6	9	9.0000
d[f	chr17:7216657-7216887(-)$1	230	28	31	9.0000
fff	chr3:52561767-52562037(-)$1	270	27	30	9.0000
===	chr17:40991253-40991498(+)$1	245	39	42	9.0000
hhh	chr6:31731942-31732232(+)$1	290	93	96	9.0000
FFF	chr2:209169526-209169772(+)$1	246	1	4	9.0000
:::	chr4:2628162-2628403(+)$1	241	2	5	9.0000
FFF	chr19:16770668-16770913(-)$1	245	6	9	9.0000
C::	chr11:63719820-63720154(+)$1	334	9	12	9.0000
mmm	chr1:169080525-169080796(+)$1	271	89	92	9.0000
JJJ	chr14:102547899-102548135(-)$1	236	41	44	9.0000
hhh	chr20:57246246-57246452(+)$1	206	61	64	9.0000
ttt	chr3:184039255-184039479(+)$1	224	52	55	9.0000
:ff	chr8:25252958-25253225(+)$1	267	14	17	9.0000
Ggg	chr19:8538985-8539214(+)$1	229	8	11	9.0000
doo	chr1:97272372-97272613(+)$1	241	27	30	9.0000
ffc	chr17:48629246-48629524(+)$1	278	16	19	9.0000
ddd	chr5:134734703-134734964(-)$1	261	178	181	9.0000
ccc	chr5:74077631-74077867(-)$1	236	46	49	9.0000
fff	chr19:19033047-19033323(+)$1	276	3	6	9.0000
:::	chr11:118888129-118888351(-)$1	222	157	160	9.0000
:::	chr18:77730439-77730692(+)$1	253	7	10	9.0000
ddn	chr22:22313914-22314205(-)$1	291	24	27	9.0000
eee	chr14:23946653-23946884(+)$1	231	67	70	9.0000
]cc	chr3:49052448-49052700(+)$1	252	28	31	9.0000
eee	chr22:22042943-22043200(+)$1	257	27	30	9.0000
d""	chr1:11900189-11900438(+)$1	249	5	8	9.0000
Dgg	chr19:2233906-2234135(-)$1	229	63	66	9.0000
ccm	chr6:155578745-155579019(-)$1	274	56	59	9.0000
:::	chr20:20016791-20017049(-)$1	258	103	106	9.0000
H{E	chr10:24508565-24508946(+)$1	381	56	59	9.0000
HHH	chr14:23237169-23237407(+)$1	238	6	9	9.0000
CCC	chr15:67835546-67835870(+)$1	324	0	3	9.0000
LLE	chr7:11068236-11068544(+)$1	308	92	95	9.0000
:::	chr2:135809901-135810155(+)$1	254	9	12	9.0000
DDD	chr22:44333014-44333251(+)$1	237	30	33	9.0000
:::	chr14:24608840-24609076(-)$1	236	12	15	9.0000
EE:	chr19:10229708-10229947(-)$1	239	32	35	9.0000
DDK	chr18:54305474-54305771(-)$1	297	4	7	9.0000
:CC	chr20:60715881-60716095(-)$1	214	0	3	9.0000
ddd	chr9:102888641-102888924(+)$1	283	15	18	9.0000
dFF	chr19:50364936-50365206(-)$1	270	27	30	9.0000
444	chr12:120659327-120659660(-)$1	333	92	95	9.0000
hhh	chr2:27719686-27719931(+)$1	245	130	133	9.0000
eee	chr2:61411746-61411960(+)$1	214	35	38	9.0000

#DB
...	chr2:238483948-238484188(-)$1	1	12	15	9.0000
(((	chr3:49060467-49060752(+)$1	1	7	10	9.0000
...	chr20:20022988-20023230(-)$1	1	12	15	9.0000
(((	chr17:61790666-61790983(-)$1	1	20	23	9.0000
(((	chr14:24606628-24606831(+)$1	1	26	29	9.0000
)).	chr15:91503470-91503865(+)$1	1	149	152	9.0000
)).	chr8:22941825-22942199(+)$1	1	10	13	9.0000
(((	chr5:137521940-137522221(+)$1	1	23	26	9.0000
(((	chr20:34435192-34435456(+)$1	1	17	20	9.0000
((.	chr2:112656170-112656433(+)$1	1	174	177	9.0000
)))	chr15:77239702-77239959(+)$1	1	164	167	9.0000
)).	chr5:148880442-148880855(-)$1	1	138	141	9.0000
...	chr3:184041096-184041333(+)$1	1	18	21	9.0000
.((	chr1:180991724-180992009(-)$1	1	46	49	9.0000
((.	chr7:73010484-73010702(-)$1	1	54	57	9.0000
...	chr2:130910566-130910824(-)$1	1	21	24	9.0000
(((	chr17:48627984-48628233(+)$1	1	12	15	9.0000
(((	chr9:6420866-6421147(+)$1	1	61	64	9.0000
(((	chr4:17811965-17812284(-)$1	1	23	26	9.0000
)))	chr5:75893271-75893516(+)$1	1	84	87	9.0000
.))	chr5:137500707-137500955(-)$1	1	71	74	9.0000
...	chr1:33117534-33117751(+)$1	1	48	51	9.0000
(((	chr2:113330053-113330335(+)$1	1	30	33	9.0000
(((	chr2:27886149-27886406(-)$1	1	40	43	9.0000
(((	chr1:46080583-46080879(+)$1	1	134	137	9.0000
)))	chr15:91537539-91537798(-)$1	1	120	123	9.0000
(..	chr14:53385889-53386173(-)$1	1	54	57	9.0000
)..	chr20:62612461-62612721(+)$1	1	63	66	9.0000
).)	chr5:140022445-140022714(+)$1	1	35	38	9.0000
.((	chr16:15129793-15130041(+)$1	1	20	23	9.0000
(..	chr6:24775199-24775424(+)$1	1	76	79	9.0000
(((	chr9:36204021-36204275(+)$1	1	5	8	9.0000
)))	chr17:37026384-37026611(+)$1	1	212	215	9.0000
(((	chr17:26906965-26907238(-)$1	1	39	42	9.0000
)..	chr22:44335772-44335990(+)$1	1	190	193	9.0000
)))	chr14:21679466-21679702(-)$1	1	95	98	9.0000
...	chrX:122744687-122744913(-)$1	1	12	15	9.0000
...	chr20:2967324-2967557(+)$1	1	0	3	9.0000
.))	chr19:19135974-19136218(-)$1	1	143	146	9.0000
)))	chr2:48706973-48707193(+)$1	1	84	87	9.0000
(((	chr7:150037506-150037803(-)$1	1	7	10	9.0000
(((	chr3:51426285-51426569(+)$1	1	33	36	9.0000
(((	chr6:31498455-31498707(-)$1	1	78	81	9.0000
.((	chr5:68616146-68616492(-)$1	1	58	61	9.0000
)))	chr16:30773694-30773979(+)$1	1	116	119	9.0000
)..	chr6:111726578-111726841(-)$1	1	57	60	9.0000
(((	chr1:145299784-145300047(+)$1	1	90	93	9.0000
(..	chr12:64803643-64803901(+)$1	1	134	137	9.0000
)))	chr11:74644742-74645019(-)$1	1	69	72	9.0000
(((	chr10:79580821-79581099(-)$1	1	7	10	9.0000
(((	chr17:46052778-46053035(+)$1	1	5	8	9.0000
((.	chr3:50098815-50099060(+)$1	1	72	75	9.0000
..(	chr2:74588561-74588810(-)$1	1	10	13	9.0000
.((	chr5:891172-891497(-)$1	1	6	9	9.0000
(.(	chr17:7216657-7216887(-)$1	1	28	31	9.0000
(((	chr3:52561767-52562037(-)$1	1	27	30	9.0000
(((	chr17:40991253-40991498(+)$1	1	39	42	9.0000
)))	chr6:31731942-31732232(+)$1	1	93	96	9.0000
(((	chr2:209169526-209169772(+)$1	1	1	4	9.0000
...	chr4:2628162-2628403(+)$1	1	2	5	9.0000
(((	chr19:16770668-16770913(-)$1	1	6	9	9.0000
(..	chr11:63719820-63720154(+)$1	1	9	12	9.0000
...	chr1:169080525-169080796(+)$1	1	89	92	9.0000
(((	chr14:102547899-102548135(-)$1	1	41	44	9.0000
(((	chr20:57246246-57246452(+)$1	1	61	64	9.0000
...	chr3:184039255-184039479(+)$1	1	52	55	9.0000
.((	chr8:25252958-25253225(+)$1	1	14	17	9.0000
(((	chr19:8538985-8539214(+)$1	1	8	11	9.0000
(..	chr1:97272372-97272613(+)$1	1	27	30	9.0000
(((	chr17:48629246-48629524(+)$1	1	16	19	9.0000
)))	chr5:134734703-134734964(-)$1	1	178	181	9.0000
(((	chr5:74077631-74077867(-)$1	1	46	49	9.0000
(((	chr19:19033047-19033323(+)$1	1	3	6	9.0000
...	chr11:118888129-118888351(-)$1	1	157	160	9.0000
...	chr18:77730439-77730692(+)$1	1	7	10	9.0000
((.	chr22:22313914-22314205(-)$1	1	24	27	9.0000
)))	chr14:23946653-23946884(+)$1	1	67	70	9.0000
.))	chr3:49052448-49052700(+)$1	1	28	31	9.0000
)))	chr22:22042943-22043200(+)$1	1	27	30	9.0000
(..	chr1:11900189-11900438(+)$1	1	5	8	9.0000
(((	chr19:2233906-2234135(-)$1	1	63	66	9.0000
((.	chr6:155578745-155579019(-)$1	1	56	59	9.0000
...	chr20:20016791-20017049(-)$1	1	103	106	9.0000
(.(	chr10:24508565-24508946(+)$1	1	56	59	9.0000
(((	chr14:23237169-23237407(+)$1	1	6	9	9.0000
(((	chr15:67835546-67835870(+)$1	1	0	3	9.0000
..(	chr7:11068236-11068544(+)$1	1	92	95	9.0000
...	chr2:135809901-135810155(+)$1	1	9	12	9.0000
(((	chr22:44333014-44333251(+)$1	1	30	33	9.0000
...	chr14:24608840-24609076(-)$1	1	12	15	9.0000
((.	chr19:10229708-10229947(-)$1	1	32	35	9.0000
((.	chr18:54305474-54305771(-)$1	1	4	7	9.0000
.((	chr20:60715881-60716095(-)$1	1	0	3	9.0000
(((	chr9:102888641-102888924(+)$1	1	15	18	9.0000
)((	chr19:50364936-50365206(-)$1	1	27	30	9.0000
...	chr12:120659327-120659660(-)$1	1	92	95	9.0000
)))	chr2:27719686-27719931(+)$1	1	130	133	9.0000
(((	chr2:61411746-61411960(+)$1	1	35	38	9.0000

#PSSM
C : 0.94	c : 0.05	
C : 0.94	c : 0.05	
U : 0.94	u : 0.05	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF014MZO_POLR2G_transcript_m2_run1.nuc.txt

#NT
uuuuguuuuguu	chr16:87399491-87399742(-)$1	251	86	98	24.1818
uuuuguuuuuuu	chr14:39742462-39742719(+)$1	257	88	100	27.3636
UUUUGUGAUGUU	chr2:153258775-153259051(+)$1	276	263	275	17.5909
uauuguuuuuuc	chr6:35844301-35844526(-)$1	225	11	23	19.6363
CUUUUUUUUUUU	chr16:89469764-89470052(-)$1	288	82	94	21.6818
UUUUAAUUUUUC	chr13:98868337-98868586(+)$1	249	8	20	17.8181
uuuuuuuuuuuu	chr16:68144122-68144372(+)$1	250	89	101	26.2272
UUUUUUUUUUUU	chr16:81480760-81481007(+)$1	247	81	93	26.2272
UUUUGUCUUCUU	chr21:47567392-47567659(-)$1	267	93	105	20.5454
uuuuauuuuugu	chr5:78913977-78914210(+)$1	233	78	90	21.0000
uuuuguuuuuuu	chr2:70459852-70460105(-)$1	253	90	102	27.3636
UUUUCUUUugug	chr17:79963668-79963934(+)$1	266	220	232	18.5000
uuuuuuuuuuuu	chr2:11423267-11423495(-)$1	228	93	105	26.2272
uuuuuuuuuuuu	chr21:47567151-47567421(-)$1	270	205	217	26.2272
UUUUGUCUUUUA	chr1:2186242-2186541(+)$1	299	277	289	21.0000
uugugugauuuu	chr21:47567323-47567558(-)$1	235	97	109	16.2272
UUUUGUUGUUUG	chr2:236413819-236414085(+)$1	266	22	34	20.0909
uuuuuuuuuuuu	chr20:17946168-17946419(-)$1	251	88	100	26.2272
uuuuguguuuuu	chr20:34325012-34325253(-)$1	241	225	237	24.6363
uuuugguuuaua	chr7:918435-918722(+)$1	287	105	117	16.6818
uuuuggguuugu	chr19:937409-937693(+)$1	284	71	83	16.6818

#otherMatches

#Struct PSSM
eeee::::::::	chr19:893459-893690(+)$1	231	126	138	26.2272
hhhhhyyyyyyy	chr16:87399491-87399742(-)$1	251	86	98	24.1818
]dddd:::::::	chr14:39742462-39742719(+)$1	257	88	100	27.3636
ooooooccc]cc	chr2:153258775-153259051(+)$1	276	263	275	17.5909
rrrrrrrrreee	chr6:35844301-35844526(-)$1	225	11	23	19.6363
b^^^^^^^^^^^	chr16:89469764-89470052(-)$1	288	82	94	21.6818
cctttttttttt	chr13:98868337-98868586(+)$1	249	8	20	17.8181
::::::::::::	chr16:68144122-68144372(+)$1	250	89	101	26.2272
fffff%%%%%%g	chr16:81480760-81481007(+)$1	247	81	93	26.2272
f####eeeeepp	chr21:47567392-47567659(-)$1	267	93	105	20.5454
hhhhhhmmmmhh	chr5:78913977-78914210(+)$1	233	78	90	21.0000
b+++++++++++	chr2:70459852-70460105(-)$1	253	90	102	27.3636
IIIIIII_____	chr17:79963668-79963934(+)$1	266	220	232	18.5000
++++++++++++	chr2:11423267-11423495(-)$1	228	93	105	26.2272
:::::::::::i	chr21:47567151-47567421(-)$1	270	205	217	26.2272
::::::::::::	chr1:2186242-2186541(+)$1	299	277	289	21.0000
KKBBCCC{CCC{	chr21:47567323-47567558(-)$1	235	97	109	16.2272
gggggg[dddd[	chr2:236413819-236414085(+)$1	266	22	34	20.0909
hhhhh:::::::	chr20:17946168-17946419(-)$1	251	88	100	26.2272
@@@@@@@@@@EE	chr20:34325012-34325253(-)$1	241	225	237	24.6363
eeeeeee>>>>>	chr7:918435-918722(+)$1	287	105	117	16.6818
33ffffff::gg	chr19:937409-937693(+)$1	284	71	83	16.6818

#DB
))))........	chr19:893459-893690(+)$1	1	126	138	26.2272
(((((.......	chr16:87399491-87399742(-)$1	1	86	98	24.1818
.)))).......	chr14:39742462-39742719(+)$1	1	88	100	27.3636
......))).))	chr2:153258775-153259051(+)$1	1	263	275	17.5909
.........)))	chr6:35844301-35844526(-)$1	1	11	23	19.6363
(...........	chr16:89469764-89470052(-)$1	1	82	94	21.6818
((..........	chr13:98868337-98868586(+)$1	1	8	20	17.8181
............	chr16:68144122-68144372(+)$1	1	89	101	26.2272
(((((......(	chr16:81480760-81481007(+)$1	1	81	93	26.2272
(....(((((..	chr21:47567392-47567659(-)$1	1	93	105	20.5454
((((((....))	chr5:78913977-78914210(+)$1	1	78	90	21.0000
(...........	chr2:70459852-70460105(-)$1	1	90	102	27.3636
))))))).....	chr17:79963668-79963934(+)$1	1	220	232	18.5000
............	chr2:11423267-11423495(-)$1	1	93	105	26.2272
...........(	chr21:47567151-47567421(-)$1	1	205	217	26.2272
............	chr1:2186242-2186541(+)$1	1	277	289	21.0000
..(((((.(((.	chr21:47567323-47567558(-)$1	1	97	109	16.2272
((((((.((((.	chr2:236413819-236414085(+)$1	1	22	34	20.0909
))))).......	chr20:17946168-17946419(-)$1	1	88	100	26.2272
..........))	chr20:34325012-34325253(-)$1	1	225	237	24.6363
))))))).....	chr7:918435-918722(+)$1	1	105	117	16.6818
..))))))..((	chr19:937409-937693(+)$1	1	71	83	16.6818

#PSSM
u : 0.63	U : 0.31	C : 0.04	
u : 0.59	U : 0.36	a : 0.04	
u : 0.59	U : 0.36	g : 0.04	
u : 0.63	U : 0.36	
g : 0.36	u : 0.22	G : 0.18	U : 0.09	A : 0.04	a : 0.04	C : 0.04	
u : 0.54	U : 0.31	g : 0.09	A : 0.04	
u : 0.50	U : 0.22	g : 0.13	C : 0.09	G : 0.04	
u : 0.59	U : 0.27	A : 0.04	a : 0.04	G : 0.04	
u : 0.68	U : 0.31	
u : 0.54	U : 0.22	g : 0.09	G : 0.04	C : 0.04	a : 0.04	
u : 0.59	U : 0.31	g : 0.09	
u : 0.54	U : 0.18	c : 0.04	C : 0.04	g : 0.04	A : 0.04	G : 0.04	a : 0.04	

#score	488.3636363636366
#seq	22
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_transcript_m1_run1.nuc.txt

#NT
CUGCU	chr11:63971789-63972064(+)$1	275	73	78	15.0000
CUGCU	chr1:27107577-27107820(+)$1	243	125	130	15.0000
CUGCU	chr1:156109660-156109898(+)$1	238	66	71	15.0000
CUGCU	chr16:29821614-29821866(+)$1	252	116	121	15.0000
CUGCU	chr13:27827801-27828013(+)$1	212	83	88	15.0000
CUGCU	chr17:79826138-79826367(-)$1	229	2	7	15.0000
CUGCU	chr14:101201160-101201422(+)$1	262	211	216	15.0000
CUGCU	chr19:17631835-17632117(+)$1	282	111	116	15.0000
CUGCU	chr1:22149026-22149275(-)$1	249	168	173	15.0000
CUGCU	chr1:46654481-46654731(-)$1	250	210	215	15.0000
CUGCU	chr7:43846526-43846784(+)$1	258	231	236	15.0000
CUGCU	chr2:73479908-73480152(+)$1	244	112	117	15.0000
CUGCU	chr11:62392662-62392909(-)$1	247	238	243	15.0000
CUGCU	chr17:73232710-73232959(-)$1	249	72	77	15.0000
CUGCU	chr19:1395335-1395602(+)$1	267	77	82	15.0000
CUGCU	chr16:28848291-28848534(+)$1	243	4	9	15.0000
CUGCU	chr22:32783833-32784093(-)$1	260	232	237	15.0000
CUGCU	chr10:106026951-106027180(+)$1	229	128	133	15.0000
CUGCU	chr16:30003328-30003592(+)$1	264	151	156	15.0000
CUGCU	chr19:8381279-8381518(-)$1	239	155	160	15.0000
CUGCU	chr17:40931295-40931584(+)$1	289	156	161	15.0000
CUGCU	chr9:100777619-100777849(+)$1	230	140	145	15.0000
CUGCU	chrX:153063831-153064047(+)$1	216	130	135	15.0000
CUGCU	chr11:64005752-64006041(+)$1	289	215	220	15.0000
CUGCU	chr19:18977310-18977579(+)$1	269	111	116	15.0000
CUGCU	chr11:62339969-62340211(-)$1	242	46	51	15.0000
CUGCU	chr17:4927755-4927994(+)$1	239	161	166	15.0000
CUGCU	chr17:40466486-40466768(-)$1	282	181	186	15.0000
CUGCU	chr19:59067085-59067330(-)$1	245	118	123	15.0000
CUGCU	chr12:112460376-112460641(+)$1	265	135	140	15.0000
CUGCU	chr1:205682338-205682597(-)$1	259	9	14	15.0000
cugcu	chr5:68505902-68506148(+)$1	246	135	140	15.0000
CUGCU	chr4:667902-668137(-)$1	235	54	59	15.0000
CUGCU	chr3:9935340-9935592(+)$1	252	118	123	15.0000
CUGCU	chr1:110204049-110204314(+)$1	265	120	125	15.0000
CUGCU	chr17:74560920-74561147(+)$1	227	63	68	15.0000
CUGCU	chr16:30081409-30081624(+)$1	215	20	25	15.0000
CUGCU	chr11:64532007-64532261(-)$1	254	185	190	15.0000
CUGCU	chr22:38282670-38282912(+)$1	242	53	58	15.0000
CUGCU	chr8:146015689-146015919(-)$1	230	146	151	15.0000

#otherMatches

#Struct PSSM
ggeee	chr11:65421995-65422225(-)$1	230	38	43	15.0000
d]ccc	chr11:63971789-63972064(+)$1	275	73	78	15.0000
ffff[	chr1:27107577-27107820(+)$1	243	125	130	15.0000
dd[bb	chr1:156109660-156109898(+)$1	238	66	71	15.0000
ccbb:	chr16:29821614-29821866(+)$1	252	116	121	15.0000
cccff	chr13:27827801-27828013(+)$1	212	83	88	15.0000
:DDDD	chr17:79826138-79826367(-)$1	229	2	7	15.0000
::FFF	chr14:101201160-101201422(+)$1	262	211	216	15.0000
dd]ff	chr19:17631835-17632117(+)$1	282	111	116	15.0000
ddd$$	chr1:22149026-22149275(-)$1	249	168	173	15.0000
ccc22	chr1:46654481-46654731(-)$1	250	210	215	15.0000
ii333	chr7:43846526-43846784(+)$1	258	231	236	15.0000
]ccce	chr2:73479908-73480152(+)$1	244	112	117	15.0000
HH:::	chr11:62392662-62392909(-)$1	247	238	243	15.0000
eeell	chr17:73232710-73232959(-)$1	249	72	77	15.0000
]bbcc	chr19:1395335-1395602(+)$1	267	77	82	15.0000
:::::	chr16:28848291-28848534(+)$1	243	4	9	15.0000
eeeee	chr22:32783833-32784093(-)$1	260	232	237	15.0000
:::cc	chr10:106026951-106027180(+)$1	229	128	133	15.0000
=====	chr16:30003328-30003592(+)$1	264	151	156	15.0000
dddpp	chr19:8381279-8381518(-)$1	239	155	160	15.0000
c[ccc	chr17:40931295-40931584(+)$1	289	156	161	15.0000
bb]ad	chr9:100777619-100777849(+)$1	230	140	145	15.0000
$$$$$	chrX:153063831-153064047(+)$1	216	130	135	15.0000
ooooc	chr11:64005752-64006041(+)$1	289	215	220	15.0000
:dddd	chr19:18977310-18977579(+)$1	269	111	116	15.0000
DDDKK	chr11:62339969-62340211(-)$1	242	46	51	15.0000
ggeee	chr17:4927755-4927994(+)$1	239	161	166	15.0000
~A}HH	chr17:40466486-40466768(-)$1	282	181	186	15.0000
]iiii	chr19:59067085-59067330(-)$1	245	118	123	15.0000
c[ccc	chr12:112460376-112460641(+)$1	265	135	140	15.0000
B{BBK	chr1:205682338-205682597(-)$1	259	9	14	15.0000
FFF~~	chr5:68505902-68506148(+)$1	246	135	140	15.0000
eeeep	chr4:667902-668137(-)$1	235	54	59	15.0000
eeeee	chr3:9935340-9935592(+)$1	252	118	123	15.0000
??JJJ	chr1:110204049-110204314(+)$1	265	120	125	15.0000
fffff	chr17:74560920-74561147(+)$1	227	63	68	15.0000
BBLLL	chr16:30081409-30081624(+)$1	215	20	25	15.0000
fffff	chr11:64532007-64532261(-)$1	254	185	190	15.0000
FF{BB	chr22:38282670-38282912(+)$1	242	53	58	15.0000
b22gg	chr8:146015689-146015919(-)$1	230	146	151	15.0000

#DB
(((((	chr11:65421995-65422225(-)$1	1	38	43	15.0000
).)))	chr11:63971789-63972064(+)$1	1	73	78	15.0000
((((.	chr1:27107577-27107820(+)$1	1	125	130	15.0000
((.((	chr1:156109660-156109898(+)$1	1	66	71	15.0000
)))).	chr16:29821614-29821866(+)$1	1	116	121	15.0000
)))((	chr13:27827801-27828013(+)$1	1	83	88	15.0000
.((((	chr17:79826138-79826367(-)$1	1	2	7	15.0000
..)))	chr14:101201160-101201422(+)$1	1	211	216	15.0000
)).))	chr19:17631835-17632117(+)$1	1	111	116	15.0000
(((..	chr1:22149026-22149275(-)$1	1	168	173	15.0000
)))..	chr1:46654481-46654731(-)$1	1	210	215	15.0000
))...	chr7:43846526-43846784(+)$1	1	231	236	15.0000
.)))(	chr2:73479908-73480152(+)$1	1	112	117	15.0000
))...	chr11:62392662-62392909(-)$1	1	238	243	15.0000
(((..	chr17:73232710-73232959(-)$1	1	72	77	15.0000
.))))	chr19:1395335-1395602(+)$1	1	77	82	15.0000
.....	chr16:28848291-28848534(+)$1	1	4	9	15.0000
)))))	chr22:32783833-32784093(-)$1	1	232	237	15.0000
...((	chr10:106026951-106027180(+)$1	1	128	133	15.0000
(((((	chr16:30003328-30003592(+)$1	1	151	156	15.0000
(((..	chr19:8381279-8381518(-)$1	1	155	160	15.0000
(.(((	chr17:40931295-40931584(+)$1	1	156	161	15.0000
)).))	chr9:100777619-100777849(+)$1	1	140	145	15.0000
.....	chrX:153063831-153064047(+)$1	1	130	135	15.0000
....)	chr11:64005752-64006041(+)$1	1	215	220	15.0000
.((((	chr19:18977310-18977579(+)$1	1	111	116	15.0000
(((..	chr11:62339969-62340211(-)$1	1	46	51	15.0000
)))))	chr17:4927755-4927994(+)$1	1	161	166	15.0000
.).))	chr17:40466486-40466768(-)$1	1	181	186	15.0000
.))))	chr19:59067085-59067330(-)$1	1	118	123	15.0000
(.(((	chr12:112460376-112460641(+)$1	1	135	140	15.0000
(.((.	chr1:205682338-205682597(-)$1	1	9	14	15.0000
)))..	chr5:68505902-68506148(+)$1	1	135	140	15.0000
((((.	chr4:667902-668137(-)$1	1	54	59	15.0000
(((((	chr3:9935340-9935592(+)$1	1	118	123	15.0000
..)))	chr1:110204049-110204314(+)$1	1	120	125	15.0000
(((((	chr17:74560920-74561147(+)$1	1	63	68	15.0000
((...	chr16:30081409-30081624(+)$1	1	20	25	15.0000
)))))	chr11:64532007-64532261(-)$1	1	185	190	15.0000
((.((	chr22:38282670-38282912(+)$1	1	53	58	15.0000
)..))	chr8:146015689-146015919(-)$1	1	146	151	15.0000

#PSSM
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
G : 0.95	g : 0.04	
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	

#score	615.0000000000001
#seq	41
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_CDS_m2_run1.nuc.txt

#NT
CUGG	chr8:125551304-125551577(+)$1	273	47	51	11.9999
CUGG	chr3:51422661-51422923(+)$1	262	139	143	11.9999
CUGG	chr8:100904086-100904339(-)$1	253	132	136	11.9999
CUGG	chr6:26124323-26124609(+)$1	286	108	112	11.9999
CUGG	chr16:88878131-88878382(-)$1	251	55	59	11.9999
CUGG	chr9:139564634-139564877(+)$1	243	53	57	11.9999
CUGG	chr22:20074019-20074257(+)$1	238	28	32	11.9999
CUGG	chr17:26902397-26902663(-)$1	266	42	46	11.9999
CUGG	chr2:171785686-171785997(+)$1	311	110	114	11.9999
CUGG	chr15:80215285-80215613(-)$1	328	55	59	11.9999
CUGG	chr7:5632350-5632686(+)$1	336	37	41	11.9999
cugg	chr1:116915775-116916028(+)$1	253	88	92	11.9999
CUGG	chr22:21996524-21996843(+)$1	319	68	72	11.9999
CUGG	chr11:118926684-118926964(-)$1	280	14	18	11.9999
CUGG	chr1:110948866-110949101(-)$1	235	11	15	11.9999
CUGG	chr22:50354963-50355209(+)$1	246	50	54	11.9999
CUGG	chr21:35287931-35288175(-)$1	244	186	190	11.9999
CUGG	chr6:31696774-31697042(-)$1	268	125	129	11.9999
CUGG	chr9:124921805-124922105(-)$1	300	254	258	11.9999
CUGG	chr16:83841505-83841826(+)$1	321	161	165	11.9999
CUGG	chr18:43678035-43678305(-)$1	270	165	169	11.9999
CUGG	chr12:133338118-133338372(-)$1	254	32	36	11.9999
CUGG	chr3:10362627-10362887(-)$1	260	128	132	11.9999
CUGG	chr1:156389913-156390216(-)$1	303	208	212	11.9999
CUGG	chr7:150935323-150935626(+)$1	303	49	53	11.9999
CUGG	chr19:2248142-2248451(+)$1	309	8	12	11.9999
CUGG	chr11:208998-209295(+)$1	297	77	81	11.9999
CUGG	chr19:41903650-41903912(+)$1	262	111	115	11.9999
CUGG	chr7:100170680-100170918(-)$1	238	105	109	11.9999
CUGG	chr7:99690603-99690812(-)$1	209	99	103	11.9999
CUGG	chr19:4037223-4037478(+)$1	255	3	7	11.9999
CUGG	chr3:33138376-33138676(-)$1	300	0	4	11.9999
CUGG	chr19:50354409-50354718(+)$1	309	283	287	11.9999
CUGG	chr19:46141997-46142251(-)$1	254	204	208	11.9999
CUGG	chr3:51422723-51422966(+)$1	243	77	81	11.9999
CUGG	chr7:150935205-150935523(+)$1	318	38	42	11.9999
CUGG	chr5:177019114-177019368(+)$1	254	113	117	11.9999
CUGG	chr7:44621560-44621877(-)$1	317	88	92	11.9999
CUGG	chr19:917317-917684(+)$1	367	47	51	11.9999
CUGG	chr10:3167244-3167455(+)$1	211	161	165	11.9999
CUGG	chr7:100172720-100172951(-)$1	231	84	88	11.9999
CUGG	chr12:56498392-56498662(+)$1	270	63	67	11.9999
CUGG	chr11:62284229-62284578(-)$1	349	58	62	11.9999
CUGG	chr14:21484856-21485154(-)$1	298	14	18	11.9999
CUGG	chr17:41150665-41150883(+)$1	218	18	22	11.9999
CUGG	chr20:401388-401659(+)$1	271	21	25	11.9999
CUGG	chr15:45003623-45003918(+)$1	295	0	4	11.9999
CUGG	chr5:132202458-132202720(+)$1	262	20	24	11.9999
CUGG	chr11:118277551-118277778(+)$1	227	66	70	11.9999
cugg	chr19:40331236-40331511(-)$1	275	18	22	11.9999
CUGG	chr4:129208785-129209032(-)$1	247	74	78	11.9999
cugg	chr2:127413716-127413984(+)$1	268	71	75	11.9999
CUGG	chr5:137688338-137688674(+)$1	336	283	287	11.9999
CUGG	chr11:5290927-5291163(-)$1	236	35	39	11.9999
CUGG	chr7:100172817-100173059(-)$1	242	33	37	11.9999
CUGG	chr6:33382578-33382941(+)$1	363	6	10	11.9999
CUGG	chr9:140172989-140173267(+)$1	278	173	177	11.9999
CUGG	chr10:81107159-81107412(+)$1	253	24	28	11.9999
CUGG	chr22:19951040-19951313(+)$1	273	95	99	11.9999
CUGG	chr3:122785862-122786235(+)$1	373	44	48	11.9999
CUGG	chr7:150934503-150934740(+)$1	237	9	13	11.9999
CUGG	chr6:26204760-26205008(+)$1	248	116	120	11.9999
CUGG	chr8:145065418-145065811(+)$1	393	1	5	11.9999
CUGG	chr1:33820628-33821025(+)$1	397	33	37	11.9999
CUGG	chr17:79977650-79977888(-)$1	238	47	51	11.9999
CUGG	chrX:44732680-44732937(+)$1	257	28	32	11.9999
CUGG	chr22:20073617-20073901(+)$1	284	26	30	11.9999
cugg	chr1:1284341-1284619(-)$1	278	20	24	11.9999
CUGG	chr5:102521862-102522164(+)$1	302	263	267	11.9999
CUGG	chr10:53457468-53457725(-)$1	257	106	110	11.9999
CUGG	chr11:61584155-61584381(-)$1	226	46	50	11.9999
CUGG	chr18:9102653-9102896(+)$1	243	28	32	11.9999
CUGG	chr22:19950914-19951240(+)$1	326	109	113	11.9999
CUgg	chr8:145149917-145150179(+)$1	262	221	225	11.9999
CUGG	chr4:103790084-103790436(+)$1	352	148	152	11.9999
CUGG	chr15:64385777-64386105(-)$1	328	164	168	11.9999
CUGG	chr20:35234174-35234466(+)$1	292	222	226	11.9999
CUGG	chr6:27114808-27115038(+)$1	230	103	107	11.9999
CUGG	chr19:51869425-51869712(-)$1	287	15	19	11.9999
CUGG	chr7:54825151-54825388(-)$1	237	14	18	11.9999
CUGG	chr7:22862255-22862561(-)$1	306	39	43	11.9999
CUgg	chr2:130939790-130940064(+)$1	274	87	91	11.9999
CUGG	chr19:2248251-2248556(+)$1	305	154	158	11.9999
CUGG	chr19:13049356-13049610(+)$1	254	5	9	11.9999
CUGG	chr4:667901-668107(-)$1	206	7	11	11.9999
CUGG	chr2:27294195-27294431(-)$1	236	20	24	11.9999
CUGG	chr19:47634130-47634380(+)$1	250	76	80	11.9999
CUGG	chr1:12227060-12227331(+)$1	271	15	19	11.9999
cugg	chr9:101558654-101558911(-)$1	257	222	226	11.9999
CUGG	chr3:49412838-49413112(-)$1	274	111	115	11.9999
CUGG	chr1:201122942-201123190(-)$1	248	49	53	11.9999
CUGG	chr11:61557918-61558175(-)$1	257	199	203	11.9999
CUGG	chr17:8108210-8108448(-)$1	238	176	180	11.9999

#otherMatches

#Struct PSSM
hhhh	chr21:33031922-33032186(+)$1	264	44	48	11.9999
dddF	chr8:125551304-125551577(+)$1	273	47	51	11.9999
====	chr3:51422661-51422923(+)$1	262	139	143	11.9999
mmee	chr8:100904086-100904339(-)$1	253	132	136	11.9999
gg66	chr6:26124323-26124609(+)$1	286	108	112	11.9999
e!!b	chr16:88878131-88878382(-)$1	251	55	59	11.9999
CCC{	chr9:139564634-139564877(+)$1	243	53	57	11.9999
DDD:	chr22:20074019-20074257(+)$1	238	28	32	11.9999
dddc	chr17:26902397-26902663(-)$1	266	42	46	11.9999
ee]f	chr2:171785686-171785997(+)$1	311	110	114	11.9999
ccll	chr15:80215285-80215613(-)$1	328	55	59	11.9999
!!gg	chr7:5632350-5632686(+)$1	336	37	41	11.9999
GGGG	chr1:116915775-116916028(+)$1	253	88	92	11.9999
hh[a	chr22:21996524-21996843(+)$1	319	68	72	11.9999
DNNN	chr11:118926684-118926964(-)$1	280	14	18	11.9999
eeee	chr1:110948866-110949101(-)$1	235	11	15	11.9999
ccc[	chr22:50354963-50355209(+)$1	246	50	54	11.9999
ffff	chr21:35287931-35288175(-)$1	244	186	190	11.9999
a!!d	chr6:31696774-31697042(-)$1	268	125	129	11.9999
CC}D	chr9:124921805-124922105(-)$1	300	254	258	11.9999
b]bb	chr16:83841505-83841826(+)$1	321	161	165	11.9999
IIII	chr18:43678035-43678305(-)$1	270	165	169	11.9999
h:cc	chr12:133338118-133338372(-)$1	254	32	36	11.9999
DDDD	chr3:10362627-10362887(-)$1	260	128	132	11.9999
dddd	chr1:156389913-156390216(-)$1	303	208	212	11.9999
IIII	chr7:150935323-150935626(+)$1	303	49	53	11.9999
JJJJ	chr19:2248142-2248451(+)$1	309	8	12	11.9999
EEcc	chr11:208998-209295(+)$1	297	77	81	11.9999
hhhh	chr19:41903650-41903912(+)$1	262	111	115	11.9999
ffff	chr7:100170680-100170918(-)$1	238	105	109	11.9999
GGGG	chr7:99690603-99690812(-)$1	209	99	103	11.9999
gggg	chr19:4037223-4037478(+)$1	255	3	7	11.9999
EEEE	chr3:33138376-33138676(-)$1	300	0	4	11.9999
IIII	chr19:50354409-50354718(+)$1	309	283	287	11.9999
g22d	chr19:46141997-46142251(-)$1	254	204	208	11.9999
====	chr3:51422723-51422966(+)$1	243	77	81	11.9999
hhhd	chr7:150935205-150935523(+)$1	318	38	42	11.9999
hhhh	chr5:177019114-177019368(+)$1	254	113	117	11.9999
bb]g	chr7:44621560-44621877(-)$1	317	88	92	11.9999
!!gg	chr19:917317-917684(+)$1	367	47	51	11.9999
iiii	chr10:3167244-3167455(+)$1	211	161	165	11.9999
{FFF	chr7:100172720-100172951(-)$1	231	84	88	11.9999
eeeb	chr12:56498392-56498662(+)$1	270	63	67	11.9999
ff[c	chr11:62284229-62284578(-)$1	349	58	62	11.9999
:bb[	chr14:21484856-21485154(-)$1	298	14	18	11.9999
nfff	chr17:41150665-41150883(+)$1	218	18	22	11.9999
ceee	chr20:401388-401659(+)$1	271	21	25	11.9999
::JJ	chr15:45003623-45003918(+)$1	295	0	4	11.9999
LEEE	chr5:132202458-132202720(+)$1	262	20	24	11.9999
dddd	chr11:118277551-118277778(+)$1	227	66	70	11.9999
mmme	chr19:40331236-40331511(-)$1	275	18	22	11.9999
gggg	chr4:129208785-129209032(-)$1	247	74	78	11.9999
dooo	chr2:127413716-127413984(+)$1	268	71	75	11.9999
ddll	chr5:137688338-137688674(+)$1	336	283	287	11.9999
[ccc	chr11:5290927-5291163(-)$1	236	35	39	11.9999
rrrd	chr7:100172817-100173059(-)$1	242	33	37	11.9999
BB:c	chr6:33382578-33382941(+)$1	363	6	10	11.9999
dddd	chr9:140172989-140173267(+)$1	278	173	177	11.9999
B:::	chr10:81107159-81107412(+)$1	253	24	28	11.9999
b[a[	chr22:19951040-19951313(+)$1	273	95	99	11.9999
eeee	chr3:122785862-122786235(+)$1	373	44	48	11.9999
KDDD	chr7:150934503-150934740(+)$1	237	9	13	11.9999
ffff	chr6:26204760-26205008(+)$1	248	116	120	11.9999
HHHH	chr8:145065418-145065811(+)$1	393	1	5	11.9999
h!!d	chr1:33820628-33821025(+)$1	397	33	37	11.9999
iiii	chr17:79977650-79977888(-)$1	238	47	51	11.9999
ffff	chrX:44732680-44732937(+)$1	257	28	32	11.9999
LLLE	chr22:20073617-20073901(+)$1	284	26	30	11.9999
eeee	chr1:1284341-1284619(-)$1	278	20	24	11.9999
qeee	chr5:102521862-102522164(+)$1	302	263	267	11.9999
eeee	chr10:53457468-53457725(-)$1	257	106	110	11.9999
eeee	chr11:61584155-61584381(-)$1	226	46	50	11.9999
ffff	chr18:9102653-9102896(+)$1	243	28	32	11.9999
blll	chr22:19950914-19951240(+)$1	326	109	113	11.9999
:::f	chr8:145149917-145150179(+)$1	262	221	225	11.9999
ff$$	chr4:103790084-103790436(+)$1	352	148	152	11.9999
====	chr15:64385777-64386105(-)$1	328	164	168	11.9999
DDDE	chr20:35234174-35234466(+)$1	292	222	226	11.9999
dddd	chr6:27114808-27115038(+)$1	230	103	107	11.9999
rrrd	chr19:51869425-51869712(-)$1	287	15	19	11.9999
[ddd	chr7:54825151-54825388(-)$1	237	14	18	11.9999
c[dd	chr7:22862255-22862561(-)$1	306	39	43	11.9999
ddd]	chr2:130939790-130940064(+)$1	274	87	91	11.9999
#eee	chr19:2248251-2248556(+)$1	305	154	158	11.9999
D{CC	chr19:13049356-13049610(+)$1	254	5	9	11.9999
nndd	chr4:667901-668107(-)$1	206	7	11	11.9999
hEEE	chr2:27294195-27294431(-)$1	236	20	24	11.9999
aeee	chr19:47634130-47634380(+)$1	250	76	80	11.9999
EEEE	chr1:12227060-12227331(+)$1	271	15	19	11.9999
ffff	chr9:101558654-101558911(-)$1	257	222	226	11.9999
gggg	chr3:49412838-49413112(-)$1	274	111	115	11.9999
FFFG	chr1:201122942-201123190(-)$1	248	49	53	11.9999
:eee	chr11:61557918-61558175(-)$1	257	199	203	11.9999
gggg	chr17:8108210-8108448(-)$1	238	176	180	11.9999

#DB
))))	chr21:33031922-33032186(+)$1	1	44	48	11.9999
)))(	chr8:125551304-125551577(+)$1	1	47	51	11.9999
((((	chr3:51422661-51422923(+)$1	1	139	143	11.9999
..))	chr8:100904086-100904339(-)$1	1	132	136	11.9999
))..	chr6:26124323-26124609(+)$1	1	108	112	11.9999
(..(	chr16:88878131-88878382(-)$1	1	55	59	11.9999
(((.	chr9:139564634-139564877(+)$1	1	53	57	11.9999
(((.	chr22:20074019-20074257(+)$1	1	28	32	11.9999
((((	chr17:26902397-26902663(-)$1	1	42	46	11.9999
)).)	chr2:171785686-171785997(+)$1	1	110	114	11.9999
((..	chr15:80215285-80215613(-)$1	1	55	59	11.9999
..((	chr7:5632350-5632686(+)$1	1	37	41	11.9999
((((	chr1:116915775-116916028(+)$1	1	88	92	11.9999
((.(	chr22:21996524-21996843(+)$1	1	68	72	11.9999
(...	chr11:118926684-118926964(-)$1	1	14	18	11.9999
((((	chr1:110948866-110949101(-)$1	1	11	15	11.9999
(((.	chr22:50354963-50355209(+)$1	1	50	54	11.9999
((((	chr21:35287931-35288175(-)$1	1	186	190	11.9999
(..(	chr6:31696774-31697042(-)$1	1	125	129	11.9999
)).)	chr9:124921805-124922105(-)$1	1	254	258	11.9999
).))	chr16:83841505-83841826(+)$1	1	161	165	11.9999
))))	chr18:43678035-43678305(-)$1	1	165	169	11.9999
).((	chr12:133338118-133338372(-)$1	1	32	36	11.9999
))))	chr3:10362627-10362887(-)$1	1	128	132	11.9999
((((	chr1:156389913-156390216(-)$1	1	208	212	11.9999
((((	chr7:150935323-150935626(+)$1	1	49	53	11.9999
((((	chr19:2248142-2248451(+)$1	1	8	12	11.9999
((((	chr11:208998-209295(+)$1	1	77	81	11.9999
))))	chr19:41903650-41903912(+)$1	1	111	115	11.9999
))))	chr7:100170680-100170918(-)$1	1	105	109	11.9999
((((	chr7:99690603-99690812(-)$1	1	99	103	11.9999
((((	chr19:4037223-4037478(+)$1	1	3	7	11.9999
((((	chr3:33138376-33138676(-)$1	1	0	4	11.9999
))))	chr19:50354409-50354718(+)$1	1	283	287	11.9999
)..)	chr19:46141997-46142251(-)$1	1	204	208	11.9999
((((	chr3:51422723-51422966(+)$1	1	77	81	11.9999
((((	chr7:150935205-150935523(+)$1	1	38	42	11.9999
((((	chr5:177019114-177019368(+)$1	1	113	117	11.9999
)).)	chr7:44621560-44621877(-)$1	1	88	92	11.9999
..((	chr19:917317-917684(+)$1	1	47	51	11.9999
))))	chr10:3167244-3167455(+)$1	1	161	165	11.9999
.(((	chr7:100172720-100172951(-)$1	1	84	88	11.9999
))))	chr12:56498392-56498662(+)$1	1	63	67	11.9999
((.(	chr11:62284229-62284578(-)$1	1	58	62	11.9999
.((.	chr14:21484856-21485154(-)$1	1	14	18	11.9999
.)))	chr17:41150665-41150883(+)$1	1	18	22	11.9999
((((	chr20:401388-401659(+)$1	1	21	25	11.9999
..((	chr15:45003623-45003918(+)$1	1	0	4	11.9999
.(((	chr5:132202458-132202720(+)$1	1	20	24	11.9999
((((	chr11:118277551-118277778(+)$1	1	66	70	11.9999
...)	chr19:40331236-40331511(-)$1	1	18	22	11.9999
((((	chr4:129208785-129209032(-)$1	1	74	78	11.9999
(...	chr2:127413716-127413984(+)$1	1	71	75	11.9999
((..	chr5:137688338-137688674(+)$1	1	283	287	11.9999
.(((	chr11:5290927-5291163(-)$1	1	35	39	11.9999
...)	chr7:100172817-100173059(-)$1	1	33	37	11.9999
((.(	chr6:33382578-33382941(+)$1	1	6	10	11.9999
))))	chr9:140172989-140173267(+)$1	1	173	177	11.9999
(...	chr10:81107159-81107412(+)$1	1	24	28	11.9999
(.(.	chr22:19951040-19951313(+)$1	1	95	99	11.9999
((((	chr3:122785862-122786235(+)$1	1	44	48	11.9999
.(((	chr7:150934503-150934740(+)$1	1	9	13	11.9999
))))	chr6:26204760-26205008(+)$1	1	116	120	11.9999
((((	chr8:145065418-145065811(+)$1	1	1	5	11.9999
(..(	chr1:33820628-33821025(+)$1	1	33	37	11.9999
((((	chr17:79977650-79977888(-)$1	1	47	51	11.9999
((((	chrX:44732680-44732937(+)$1	1	28	32	11.9999
...(	chr22:20073617-20073901(+)$1	1	26	30	11.9999
))))	chr1:1284341-1284619(-)$1	1	20	24	11.9999
.)))	chr5:102521862-102522164(+)$1	1	263	267	11.9999
((((	chr10:53457468-53457725(-)$1	1	106	110	11.9999
))))	chr11:61584155-61584381(-)$1	1	46	50	11.9999
((((	chr18:9102653-9102896(+)$1	1	28	32	11.9999
(...	chr22:19950914-19951240(+)$1	1	109	113	11.9999
...(	chr8:145149917-145150179(+)$1	1	221	225	11.9999
((..	chr4:103790084-103790436(+)$1	1	148	152	11.9999
))))	chr15:64385777-64386105(-)$1	1	164	168	11.9999
))))	chr20:35234174-35234466(+)$1	1	222	226	11.9999
))))	chr6:27114808-27115038(+)$1	1	103	107	11.9999
...)	chr19:51869425-51869712(-)$1	1	15	19	11.9999
.(((	chr7:54825151-54825388(-)$1	1	14	18	11.9999
(.((	chr7:22862255-22862561(-)$1	1	39	43	11.9999
))).	chr2:130939790-130940064(+)$1	1	87	91	11.9999
.(((	chr19:2248251-2248556(+)$1	1	154	158	11.9999
(.((	chr19:13049356-13049610(+)$1	1	5	9	11.9999
..))	chr4:667901-668107(-)$1	1	7	11	11.9999
)(((	chr2:27294195-27294431(-)$1	1	20	24	11.9999
))))	chr19:47634130-47634380(+)$1	1	76	80	11.9999
((((	chr1:12227060-12227331(+)$1	1	15	19	11.9999
))))	chr9:101558654-101558911(-)$1	1	222	226	11.9999
((((	chr3:49412838-49413112(-)$1	1	111	115	11.9999
((((	chr1:201122942-201123190(-)$1	1	49	53	11.9999
.(((	chr11:61557918-61558175(-)$1	1	199	203	11.9999
))))	chr17:8108210-8108448(-)$1	1	176	180	11.9999

#PSSM
C : 0.94	c : 0.05	
U : 0.94	u : 0.05	
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	

#score	1127.9999999999998
#seq	94
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_transcript_m1_run1.nuc.txt

#NT
uuuucuucuuucuuucucacuuuucuuuuuuucuuuccuuccuucugucuuu	chr2:64195706-64196021(-)$1	315	68	120	51.0000
cuuucuuucuuccuuuccuuccuuccuuccuuccuuucuucuuucuuucuuu	chr2:175221057-175221366(-)$1	309	71	123	64.5555
uucucuuccucucccuccuccuuuuccccucucccuccuacucucccccuuu	chr3:10327002-10327227(+)$1	225	130	182	45.6666
uucucuuucucucuccuucucucucuuuuucuuucucucacucucuUGCUUG	chr3:47672517-47672756(-)$1	239	144	196	57.3333
uucucuuucuuucuuucuuucuuucuuucuuucuuucuuucuuucuuucuuu	chr7:16294238-16294533(-)$1	295	59	111	93.8888
uucucuuucuuucuuucuuucuuucuuucuuucuuucuuucuuucuuucuuu	chrX:106432872-106433181(-)$1	309	2	54	93.8888
Uuuuccuucuuccuuucuucauuccuuuuuuguuuucuuuccuucuauucuu	chr11:105132393-105132743(-)$1	350	61	113	55.8888
uccuccuuuucucacucccucuucccuccUCUCUAUUUCUUUUUCUGUCUUU	chr6:129930005-129930256(-)$1	251	111	163	48.2222
uaaucuuucuuuccuuccuuccuuccuuccuucuuuccuuccuucuuuacuu	chr8:106495015-106495294(+)$1	279	81	133	59.2222
UCGUCCGucuuucugucugucuuucuuucucucuuucuuucuuucucucucu	chr1:186370532-186370775(+)$1	243	55	107	69.1111
uucuuuuguuuucuuuccuuucuuuucuuucucucucuuucuuuccuuucuu	chr1:143143205-143143427(+)$1	222	44	96	56.8888
uucuuucucuuucuuucuuucuuuuucucucucucucuuucucucuuuccuu	chr9:114927924-114928198(-)$1	274	78	130	77.4444
cuuucuuucuuucuuucuuucuuucuuucuuucuuucuuucuuucuuucuuu	chr7:111179081-111179313(-)$1	232	3	55	88.5555
Gucucucucucucucucucucucucucucucucucucucucucucucucuca	chr3:47642339-47642656(-)$1	317	117	169	63.7777
UUCucuuucuuucuuucuuucuuuuuuccuuucuuucuuucuuucuuuuuuu	chr6:5315881-5316140(+)$1	259	65	117	85.7777
uucauucucucucucucucucucucucuuuuuccuuauucuuuucuggcuuc	chr1:155464563-155464847(-)$1	284	96	148	51.7777
cucccuuucuuccuuccuuccuuccuuuuuuccuuccuuccuuccuuuuuua	chr7:104691454-104691722(+)$1	268	145	197	55.8888
Uuuucuuucuuucuuucuuucuuucuuucuuucuuucuuucuuucuuuuuuc	chr21:33733358-33733597(-)$1	239	81	133	87.4444
uucccuuccuuccuuuccuuccuuccuuccuucucucucucucucucuuucu	chr14:35706153-35706453(+)$1	300	106	158	60.3333
cuuccuuucuuucuuucuuucuuucuuuccuuccuuccuuccuucuuucuuu	chr6:157943937-157944197(+)$1	260	11	63	73.4444
uucccucuuuuucuuccuuacuuccuuuccuccuuuccuucuucuccccucc	chr5:12781239-12781531(+)$1	292	110	162	46.8888
uccucucucucuuuuccucccucucuuucucucuuucuuuucuucucuguug	chr7:5083886-5084164(+)$1	278	128	180	57.4444
uucuucuuccuccucuuucuucuuucuucuucuuuucuuuuuuuuuuuuuuu	chr7:72072237-72072482(-)$1	245	51	103	49.8888
uucucuucucuucucucuuucucucccucucucucuuucucucucucucuuu	chr6:20168567-20168870(-)$1	303	24	76	64.5555
GCcuuuuuuucuuuuucuuuuuuucucuucuuccuuauuuccuuauaucucu	chr3:65420768-65421043(-)$1	275	79	131	45.0000
uuccuuuccuuucuuuccuuucuuuucuuuccuuccuuuccuuccuuucuuu	chr9:114892640-114892910(-)$1	270	52	104	48.2222
uccucuuccuuucuuccuuucuuccguucuuccuuucuuccuuucuuccuuu	chr6:37945588-37945871(+)$1	283	88	140	70.5555
cucccacuguuucuuucugcuuuuaucucuuucucucuccuucucucucuUC	chr10:6245732-6246006(+)$1	274	106	158	49.3333
UUCUGCcucuaucuguuucucuuucuuucucccucucccucucucucuguuu	chr19:38948391-38948797(+)$1	406	72	124	57.3333
uuccuuuucuuuccuucuuucuuucucucucucucucucucucucuuccuuc	chr8:129010576-129010819(+)$1	243	182	234	72.3333
uuuuuuuuccuuuuuucuuucuucuuuccuuuuuuccuuucuuucuucccuu	chr18:53605613-53605854(+)$1	241	58	110	61.1111
ucuucccuccuucccucucuuucucucucuuucucuuucacucucucucuUC	chr18:18535980-18536288(-)$1	308	110	162	51.1111
uucuccuuccuucccuccuuccuuccuucuuuccuuccuuccuuccuuccuc	chr9:91007426-91007715(+)$1	289	79	131	56.2222
cccuuuuuccuucugucugucucucccucucuguuucucugugucuuucucc	chr14:91684048-91684375(+)$1	327	126	178	50.2222
uucccucucucccucccucccuuccucccuuccuuccugccuuccuuccuuc	chrX:13387184-13387491(+)$1	307	54	106	46.3333
UCCucuuuccuuccuuuuauauuucuacccuucuuucuuucuuacuuuucuu	chr1:158625893-158626143(-)$1	250	26	78	55.0000
uucucucucucuuucugucucucucuuucucucuuucuuucuucuuuuuuuu	chr2:203308150-203308438(+)$1	288	100	152	64.8888
Gucucucucucucucucucucucucugucuaucucucucucucuuucucucu	chr7:110549815-110550103(-)$1	288	95	147	60.1111
cuuuguuccuuucuuccuuccuuccuuugucucucucuuucucucuuucuug	chr3:14171496-14171744(+)$1	248	36	88	63.7777
uucuucucucuucuuucuuuuuucuucuucuuucucccuucuuucuuccuuu	chr8:27261342-27261636(+)$1	294	11	63	49.3333
uucuucuucuuucuucuucuuucuucuucuucuuucuucuucuucuuucuuc	chr2:135875300-135875577(+)$1	277	69	121	48.2222
UUUUCCUCCuuccuuccuuucccuuuucuuuucuuuccuuuccuuuUUAUUU	chr17:27776989-27777260(+)$1	271	48	100	49.3333
uuuucuuccuuccucucuuccuuccuuccuuccucccuuccuuucuuccuuc	chr8:106546564-106546894(+)$1	330	94	146	60.5555
uucucuuucucucuuuuccacuuccuuucuuucuucucuuccuuucucuuuc	chr4:25798658-25798906(-)$1	248	163	215	52.1111

#otherMatches

#Struct PSSM
::::::::::::::::::::::::bb!!cccxxxxxxxxxxxxxxxccc22b	chr4:8423727-8424045(-)$1	318	60	112	60.6666
JLLLDDDD:::::::::::::::::::::::::::::::::::::::::::h	chr2:64195706-64196021(-)$1	315	68	120	51.0000
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr2:175221057-175221366(-)$1	309	71	123	64.5555
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:10327002-10327227(+)$1	225	130	182	45.6666
:::::::::::::::::::::::::::::::::::::::::::::::bbooo	chr3:47672517-47672756(-)$1	239	144	196	57.3333
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr7:16294238-16294533(-)$1	295	59	111	93.8888
::::::::::::::::::::::::::::::::::::::::::::::::::::	chrX:106432872-106433181(-)$1	309	2	54	93.8888
GGGGGGGMMMMEEEEEKKCCCRRRRRRRRRFFFFFF{FFFFFF:::::::::	chr11:105132393-105132743(-)$1	350	61	113	55.8888
!a!!bb!!eeeeeffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:129930005-129930256(-)$1	251	111	163	48.2222
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr8:106495015-106495294(+)$1	279	81	133	59.2222
ppppppdddd4444ccceeeee::::::::::::::::::::::::::::::	chr1:186370532-186370775(+)$1	243	55	107	69.1111
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr1:143143205-143143427(+)$1	222	44	96	56.8888
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr9:114927924-114928198(-)$1	274	78	130	77.4444
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr7:111179081-111179313(-)$1	232	3	55	88.5555
ddd::::::::::::::::::::::::::::::::::::::::::::::BB}	chr3:47642339-47642656(-)$1	317	117	169	63.7777
ddddbb[eeeee!!===============^^^^^^^^^^^^^^^^^^^^^^^	chr6:5315881-5316140(+)$1	259	65	117	85.7777
e333dddd::::::::::::::::::::::::::::::::::::::EEEEER	chr1:155464563-155464847(-)$1	284	96	148	51.7777
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ff	chr7:104691454-104691722(+)$1	268	145	197	55.8888
ddffffff333eeeee::::::::::::::::::::::::::::::::::::	chr21:33733358-33733597(-)$1	239	81	133	87.4444
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr14:35706153-35706453(+)$1	300	106	158	60.3333
:::::::::::::::::::::::::::::::DDDDNNNNNGGGGGGG:::::	chr6:157943937-157944197(+)$1	260	11	63	73.4444
:::::::::::::::::::::::::::::::::::::::::::::::::::a	chr5:12781239-12781531(+)$1	292	110	162	46.8888
::::::::::::::::::::::::::::::::::::::::::::::::eeee	chr7:5083886-5084164(+)$1	278	128	180	57.4444
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:72072237-72072482(-)$1	245	51	103	49.8888
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr6:20168567-20168870(-)$1	303	24	76	64.5555
:::::::::::::::::::::::::DDDDFFFFFFKKEEEEE::::::::::	chr3:65420768-65421043(-)$1	275	79	131	45.0000
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr9:114892640-114892910(-)$1	270	52	104	48.2222
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr6:37945588-37945871(+)$1	283	88	140	70.5555
H:::::::bbqqqqqqqqbb::::::::::::::GGGGGGG:::::::::ff	chr10:6245732-6246006(+)$1	274	106	158	49.3333
rrrrccc::GGGGGGG::::::::::::::::::::::::::::::::::::	chr19:38948391-38948797(+)$1	406	72	124	57.3333
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr8:129010576-129010819(+)$1	243	182	234	72.3333
:::::::::::::::::::::::::::::::::::::::::::::eeeeeoo	chr18:53605613-53605854(+)$1	241	58	110	61.1111
ff:dddd$$$$$ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr18:18535980-18536288(-)$1	308	110	162	51.1111
{FFFFFF:::::::::::::::::::::::::::::::::::::::::::::	chr9:91007426-91007715(+)$1	289	79	131	56.2222
:::::::::::::::::::::::DDDD{JJJJJJJJJJJ:::GGGGGGG:::	chr14:91684048-91684375(+)$1	327	126	178	50.2222
::::::::::::::::::::::::::::::::::::::::::::::::::::	chrX:13387184-13387491(+)$1	307	54	106	46.3333
{CCC::::::::::::::::::::::::::::::ccc"""eeeee&&&&&&&	chr1:158625893-158626143(-)$1	250	26	78	55.0000
::::::::::::::ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:203308150-203308438(+)$1	288	100	152	64.8888
d:::::::::::::::::::::==========%%%%%%ccc$$$$$dddd[c	chr7:110549815-110550103(-)$1	288	95	147	60.1111
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr3:14171496-14171744(+)$1	248	36	88	63.7777
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr8:27261342-27261636(+)$1	294	11	63	49.3333
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr2:135875300-135875577(+)$1	277	69	121	48.2222
qqqqqbb]dddd::::::::::::::::::::::::::::::::::::::::	chr17:27776989-27777260(+)$1	271	48	100	49.3333
::::::::::::::::::::::::::::::::::::::::::::::::::::	chr8:106546564-106546894(+)$1	330	94	146	60.5555
::::::::::::::::::::::::::::::::::::::::::::::::EEEE	chr4:25798658-25798906(-)$1	248	163	215	52.1111

#DB
........................((..(((...............)))..)	chr4:8423727-8424045(-)$1	1	60	112	60.6666
(...((((...........................................(	chr2:64195706-64196021(-)$1	1	68	120	51.0000
....................................................	chr2:175221057-175221366(-)$1	1	71	123	64.5555
....................................................	chr3:10327002-10327227(+)$1	1	130	182	45.6666
...............................................((...	chr3:47672517-47672756(-)$1	1	144	196	57.3333
....................................................	chr7:16294238-16294533(-)$1	1	59	111	93.8888
....................................................	chrX:106432872-106433181(-)$1	1	2	54	93.8888
(((((((....(((((..(((.........((((((.((((((.........	chr11:105132393-105132743(-)$1	1	61	113	55.8888
.(..((..(((((((((((.................................	chr6:129930005-129930256(-)$1	1	111	163	48.2222
....................................................	chr8:106495015-106495294(+)$1	1	81	133	59.2222
......))))....))))))))..............................	chr1:186370532-186370775(+)$1	1	55	107	69.1111
....................................................	chr1:143143205-143143427(+)$1	1	44	96	56.8888
....................................................	chr9:114927924-114928198(-)$1	1	78	130	77.4444
....................................................	chr7:111179081-111179313(-)$1	1	3	55	88.5555
)))..............................................)).	chr3:47642339-47642656(-)$1	1	117	169	63.7777
((((((.(((((..(((((((((((((((.......................	chr6:5315881-5316140(+)$1	1	65	117	85.7777
)...))))......................................(((((.	chr1:155464563-155464847(-)$1	1	96	148	51.7777
..................................................))	chr7:104691454-104691722(+)$1	1	145	197	55.8888
))))))))...)))))....................................	chr21:33733358-33733597(-)$1	1	81	133	87.4444
....................................................	chr14:35706153-35706453(+)$1	1	106	158	60.3333
...............................((((.....(((((((.....	chr6:157943937-157944197(+)$1	1	11	63	73.4444
...................................................(	chr5:12781239-12781531(+)$1	1	110	162	46.8888
................................................((((	chr7:5083886-5084164(+)$1	1	128	180	57.4444
....................................................	chr7:72072237-72072482(-)$1	1	51	103	49.8888
....................................................	chr6:20168567-20168870(-)$1	1	24	76	64.5555
.........................((((((((((..(((((..........	chr3:65420768-65421043(-)$1	1	79	131	45.0000
....................................................	chr9:114892640-114892910(-)$1	1	52	104	48.2222
....................................................	chr6:37945588-37945871(+)$1	1	88	140	70.5555
(.......((........))..............(((((((.........((	chr10:6245732-6246006(+)$1	1	106	158	49.3333
....)))..)))))))....................................	chr19:38948391-38948797(+)$1	1	72	124	57.3333
....................................................	chr8:129010576-129010819(+)$1	1	182	234	72.3333
.............................................(((((..	chr18:53605613-53605854(+)$1	1	58	110	61.1111
)).((((.....(((.....................................	chr18:18535980-18536288(-)$1	1	110	162	51.1111
.((((((.............................................	chr9:91007426-91007715(+)$1	1	79	131	56.2222
.......................((((.(((((((((((...(((((((...	chr14:91684048-91684375(+)$1	1	126	178	50.2222
....................................................	chrX:13387184-13387491(+)$1	1	54	106	46.3333
.(((..............................(((...(((((.......	chr1:158625893-158626143(-)$1	1	26	78	55.0000
..............((((((................................	chr2:203308150-203308438(+)$1	1	100	152	64.8888
).....................((((((((((......(((.....((((.(	chr7:110549815-110550103(-)$1	1	95	147	60.1111
....................................................	chr3:14171496-14171744(+)$1	1	36	88	63.7777
....................................................	chr8:27261342-27261636(+)$1	1	11	63	49.3333
....................................................	chr2:135875300-135875577(+)$1	1	69	121	48.2222
.....)).))))........................................	chr17:27776989-27777260(+)$1	1	48	100	49.3333
....................................................	chr8:106546564-106546894(+)$1	1	94	146	60.5555
................................................))))	chr4:25798658-25798906(-)$1	1	163	215	52.1111

#PSSM
u : 0.59	c : 0.15	U : 0.15	G : 0.06	a : 0.02	
u : 0.73	c : 0.11	C : 0.06	U : 0.06	a : 0.02	
c : 0.64	u : 0.22	C : 0.06	a : 0.02	G : 0.02	U : 0.02	
u : 0.73	c : 0.17	U : 0.06	a : 0.02	
c : 0.66	u : 0.24	C : 0.04	G : 0.02	g : 0.02	
u : 0.75	c : 0.15	C : 0.06	a : 0.02	
u : 0.68	c : 0.26	G : 0.02	U : 0.02	
u : 0.75	c : 0.20	g : 0.02	C : 0.02	
c : 0.80	u : 0.15	g : 0.02	C : 0.02	
u : 0.82	c : 0.17	
u : 0.73	c : 0.24	a : 0.02	
u : 0.80	c : 0.20	
c : 0.88	u : 0.11	
u : 0.84	c : 0.13	a : 0.02	
u : 0.64	c : 0.28	g : 0.06	
u : 0.77	c : 0.22	
c : 0.82	u : 0.15	g : 0.02	
u : 0.77	c : 0.22	
u : 0.57	c : 0.31	g : 0.06	a : 0.04	
u : 0.75	c : 0.20	a : 0.04	
c : 0.75	u : 0.20	a : 0.04	
u : 0.82	c : 0.17	
u : 0.75	c : 0.24	
u : 0.75	c : 0.24	
c : 0.73	u : 0.22	g : 0.02	a : 0.02	
u : 0.73	c : 0.22	a : 0.02	g : 0.02	
u : 0.62	c : 0.33	a : 0.02	g : 0.02	
u : 0.82	c : 0.17	
c : 0.73	u : 0.22	g : 0.04	
u : 0.80	c : 0.17	U : 0.02	
u : 0.62	c : 0.33	C : 0.02	a : 0.02	
u : 0.75	c : 0.20	g : 0.02	U : 0.02	
c : 0.80	u : 0.15	C : 0.02	g : 0.02	
u : 0.82	c : 0.15	U : 0.02	
u : 0.62	c : 0.35	A : 0.02	
u : 0.80	c : 0.17	U : 0.02	
c : 0.80	u : 0.13	a : 0.04	U : 0.02	
u : 0.73	c : 0.24	U : 0.02	
u : 0.71	c : 0.24	C : 0.02	g : 0.02	
u : 0.75	c : 0.15	a : 0.06	U : 0.02	
c : 0.82	u : 0.13	U : 0.02	g : 0.02	
u : 0.75	c : 0.22	U : 0.02	
u : 0.64	c : 0.31	U : 0.02	g : 0.02	
u : 0.84	c : 0.11	U : 0.02	a : 0.02	
c : 0.80	u : 0.15	C : 0.02	a : 0.02	
u : 0.86	c : 0.11	U : 0.02	
u : 0.57	c : 0.24	g : 0.06	U : 0.04	a : 0.04	G : 0.02	
u : 0.68	c : 0.20	U : 0.04	a : 0.02	G : 0.02	g : 0.02	
c : 0.64	u : 0.22	C : 0.04	g : 0.04	a : 0.02	A : 0.02	
u : 0.77	c : 0.15	U : 0.06	
u : 0.73	c : 0.15	U : 0.11	
u : 0.57	c : 0.22	U : 0.04	a : 0.04	g : 0.04	C : 0.04	G : 0.02	

#score	2730.666666666669
#seq	45
#width	52
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_transcript_m2_run2.nuc.txt

#NT
GGGCGGGG	chr12:53894975-53895338(+)$1	363	70	78	20.4999
UGGCGGGG	chr14:92587885-92588113(-)$1	228	178	186	16.0714
GGGCGGAG	chr8:101965420-101965707(-)$1	287	44	52	16.3571
GGGCGGGG	chr9:111696617-111696910(+)$1	293	0	8	20.4999
GGGCGGAG	chr15:55700339-55700603(-)$1	264	159	167	16.3571
GGGCGGGG	chr20:34252576-34252813(-)$1	237	198	206	20.4999
gggcggag	chr16:89627253-89627457(+)$1	204	26	34	16.3571
GGGCGGCG	chr11:68451937-68452231(+)$1	294	79	87	16.3571
GGGCGGGG	chr11:64014143-64014394(-)$1	251	58	66	20.4999
GGGCAGGG	chr8:128748388-128748646(+)$1	258	1	9	16.2857
GGGCGGCG	chr12:96252740-96252955(+)$1	215	58	66	16.3571
GGGCAGGG	chr14:100842494-100842743(-)$1	249	140	148	16.2857
gggcgggg	chr1:227505998-227506259(-)$1	261	1	9	20.4999
GGGCGGGG	chr11:64014194-64014430(-)$1	236	94	102	20.4999
CGGCGGGG	chr2:238875573-238875825(+)$1	252	225	233	16.1428
GGGAGGGG	chr19:1388422-1388659(+)$1	237	11	19	16.4999
gggcggga	chr11:85779854-85780221(-)$1	367	13	21	16.0714
gggcgggg	chr11:2398441-2398687(+)$1	246	11	19	20.4999
GGGCAGGG	chr1:114448012-114448297(+)$1	285	11	19	16.2857
GGGCUGGG	chr16:70433079-70433340(-)$1	261	187	195	16.2142
GAGCGGGG	chr3:139108288-139108585(-)$1	297	219	227	16.2142
GGGUGGGG	chr4:83294986-83295211(-)$1	225	5	13	16.4999
GCGCGGGG	chr1:202927260-202927516(-)$1	256	95	103	16.2857
gggcgggg	chr1:1243046-1243371(-)$1	325	36	44	20.4999
GGGCGGGG	chr10:103874559-103874820(-)$1	261	12	20	20.4999
GAGCGGGG	chr5:72794262-72794485(+)$1	223	161	169	16.2142
GGGCGGGG	chr5:176560763-176561051(+)$1	288	253	261	20.4999
gggcgggg	chr1:54412012-54412325(+)$1	313	268	276	20.4999
gggcgggg	chr5:154134809-154135047(+)$1	238	174	182	20.4999
gggugggg	chr11:14521145-14521393(-)$1	248	237	245	16.4999
GGGCGGGC	chr1:46768694-46768932(-)$1	238	88	96	16.2142
GGGCGCGG	chr10:120840042-120840310(-)$1	268	2	10	15.7142
CGGCGGGG	chr6:167369804-167370140(-)$1	336	31	39	16.1428
GGGCGGCG	chr2:74374852-74375074(-)$1	222	48	56	16.3571
GGGCGGGC	chr7:54826772-54827019(-)$1	247	68	76	16.2142
GGGCGGGG	chr20:18568601-18568861(+)$1	260	165	173	20.4999
GCGCGGGG	chr3:5229415-5229715(+)$1	300	6	14	16.2857
GGGUGGGG	chr18:43678036-43678311(-)$1	275	208	216	16.4999
GGGCGGAG	chr6:125474858-125475217(+)$1	359	46	54	16.3571
GGGCGGGG	chr6:33281783-33282098(-)$1	315	15	23	20.4999
GGGCGAGG	chr22:38203862-38204145(+)$1	283	96	104	15.7142
gggcggga	chr19:36036499-36036746(+)$1	247	118	126	16.0714
AGGCGGGG	chr9:139685720-139685977(+)$1	257	210	218	15.9999
GGGCGGCG	chr9:139744405-139744661(+)$1	256	120	128	16.3571
GGGGGGGG	chr9:116172420-116172731(-)$1	311	235	243	16.3571
cggcgggg	chr19:19144145-19144419(-)$1	274	140	148	16.1428
GGGCGGGC	chr6:35265526-35265830(+)$1	304	90	98	16.2142
GGGAGGGG	chr19:39926387-39926596(-)$1	209	133	141	16.4999
GGGAGGGG	chr2:26257007-26257262(+)$1	255	193	201	16.4999
gggcgggg	chr19:2456603-2456973(-)$1	370	329	337	20.4999
gggcgggg	chr5:218340-218634(+)$1	294	214	222	20.4999
UGGCGGGG	chr15:76196143-76196545(+)$1	402	363	371	16.0714
GGGCGGGG	chr1:36689939-36690210(+)$1	271	98	106	20.4999
GGGCGGGC	chr8:57124219-57124497(+)$1	278	50	58	16.2142
gggcgggg	chr19:54693137-54693393(-)$1	256	124	132	20.4999
GGACGGGG	chr11:118272264-118272479(+)$1	215	35	43	15.7142
GGGCGGGG	chr16:67260963-67261228(+)$1	265	3	11	20.4999
gggugggg	chr2:183902833-183903101(-)$1	268	15	23	16.4999
gggcgggg	chr7:66386222-66386485(+)$1	263	219	227	20.4999
ggccgggg	chr16:29817807-29818052(+)$1	245	62	70	15.7142
GGGGGGGG	chr17:73900651-73900901(-)$1	250	33	41	16.3571
GGGCUGGG	chr16:75600276-75600519(+)$1	243	173	181	16.2142
GGGCCGGG	chr3:43732400-43732633(+)$1	233	184	192	16.2857
GGGCCGGG	chr2:55459878-55460108(+)$1	230	134	142	16.2857
GGGAGGGG	chr21:37692408-37692711(+)$1	303	31	39	16.4999
GGGCCGGG	chr11:60673733-60673961(-)$1	228	207	215	16.2857
GCGCGGGG	chr7:66386124-66386422(+)$1	298	189	197	16.2857
gggcgggg	chr6:99395581-99395874(-)$1	293	252	260	20.4999
GAGCGGGG	chr2:62115535-62115792(-)$1	257	173	181	16.2142

#otherMatches

#Struct PSSM
bb]eeeee	chr2:102314139-102314510(+)$1	371	88	96	16.2857
ffffEEEE	chr12:53894975-53895338(+)$1	363	70	78	20.4999
gggg5555	chr14:92587885-92588113(-)$1	228	178	186	16.0714
ddddmmmm	chr8:101965420-101965707(-)$1	287	44	52	16.3571
:CCC{GGG	chr9:111696617-111696910(+)$1	293	0	8	20.4999
ggggg22i	chr15:55700339-55700603(-)$1	264	159	167	16.3571
oooooeee	chr20:34252576-34252813(-)$1	237	198	206	20.4999
EEEE{FFF	chr16:89627253-89627457(+)$1	204	26	34	16.3571
GGGGG{CC	chr11:68451937-68452231(+)$1	294	79	87	16.3571
{GGGGGGG	chr11:64014143-64014394(-)$1	251	58	66	20.4999
::bb[ggg	chr8:128748388-128748646(+)$1	258	1	9	16.2857
:ccc[fff	chr12:96252740-96252955(+)$1	215	58	66	16.3571
]eeeeecc	chr14:100842494-100842743(-)$1	249	140	148	16.2857
::EEEEEB	chr1:227505998-227506259(-)$1	261	1	9	20.4999
:ccc!!cc	chr11:64014194-64014430(-)$1	236	94	102	20.4999
DIIIIIII	chr2:238875573-238875825(+)$1	252	225	233	16.1428
JJJJJJJJ	chr19:1388422-1388659(+)$1	237	11	19	16.4999
FFFFFFKK	chr11:85779854-85780221(-)$1	367	13	21	16.0714
IIIIIIII	chr11:2398441-2398687(+)$1	246	11	19	20.4999
hhhhhhhh	chr1:114448012-114448297(+)$1	285	11	19	16.2857
]ccceeee	chr16:70433079-70433340(-)$1	261	187	195	16.2142
ddoooooo	chr3:139108288-139108585(-)$1	297	219	227	16.2142
CCccc[am	chr4:83294986-83295211(-)$1	225	5	13	16.4999
ffffpppp	chr1:202927260-202927516(-)$1	256	95	103	16.2857
E{BB::cc	chr1:1243046-1243371(-)$1	325	36	44	20.4999
hhhhhhhh	chr10:103874559-103874820(-)$1	261	12	20	20.4999
22gggggg	chr5:72794262-72794485(+)$1	223	161	169	16.2142
HHHHHHHH	chr5:176560763-176561051(+)$1	288	253	261	20.4999
EGGGGGGG	chr1:54412012-54412325(+)$1	313	268	276	20.4999
gggg]a]b	chr5:154134809-154135047(+)$1	238	174	182	20.4999
GGGGGGGG	chr11:14521145-14521393(-)$1	248	237	245	16.4999
ffffffee	chr1:46768694-46768932(-)$1	238	88	96	16.2142
EEEE{EEE	chr10:120840042-120840310(-)$1	268	2	10	15.7142
blllbbii	chr6:167369804-167370140(-)$1	336	31	39	16.1428
ee[eeeee	chr2:74374852-74375074(-)$1	222	48	56	16.3571
dddd!!dd	chr7:54826772-54827019(-)$1	247	68	76	16.2142
ggffffff	chr20:18568601-18568861(+)$1	260	165	173	20.4999
JJJJ:FFF	chr3:5229415-5229715(+)$1	300	6	14	16.2857
ooooooff	chr18:43678036-43678311(-)$1	275	208	216	16.4999
fffff[ee	chr6:125474858-125475217(+)$1	359	46	54	16.3571
JJJJJJ{D	chr6:33281783-33282098(-)$1	315	15	23	20.4999
gggg[a[b	chr22:38203862-38204145(+)$1	283	96	104	15.7142
ggggggg]	chr19:36036499-36036746(+)$1	247	118	126	16.0714
JJJJJJJJ	chr9:139685720-139685977(+)$1	257	210	218	15.9999
FFFFFFDD	chr9:139744405-139744661(+)$1	256	120	128	16.3571
HHHHHH}B	chr9:116172420-116172731(-)$1	311	235	243	16.3571
2dddd]dd	chr19:19144145-19144419(-)$1	274	140	148	16.1428
ddeeeee[	chr6:35265526-35265830(+)$1	304	90	98	16.2142
JJJJJJJ:	chr19:39926387-39926596(-)$1	209	133	141	16.4999
B}CCCZZZ	chr2:26257007-26257262(+)$1	255	193	201	16.4999
JJJJJJ}D	chr19:2456603-2456973(-)$1	370	329	337	20.4999
GGGYYDDD	chr5:218340-218634(+)$1	294	214	222	20.4999
FFFEEEEE	chr15:76196143-76196545(+)$1	402	363	371	16.0714
5555eeee	chr1:36689939-36690210(+)$1	271	98	106	20.4999
FFFFFFff	chr8:57124219-57124497(+)$1	278	50	58	16.2142
========	chr19:54693137-54693393(-)$1	256	124	132	20.4999
:::GGGGG	chr11:118272264-118272479(+)$1	215	35	43	15.7142
dddbb[dd	chr16:67260963-67261228(+)$1	265	3	11	20.4999
{BBKKGGG	chr2:183902833-183903101(-)$1	268	15	23	16.4999
ffffff]c	chr7:66386222-66386485(+)$1	263	219	227	20.4999
CCC:dddd	chr16:29817807-29818052(+)$1	245	62	70	15.7142
ggg[====	chr17:73900651-73900901(-)$1	250	33	41	16.3571
ffff]ccc	chr16:75600276-75600519(+)$1	243	173	181	16.2142
eeeeeppp	chr3:43732400-43732633(+)$1	233	184	192	16.2857
CCC}DDDD	chr2:55459878-55460108(+)$1	230	134	142	16.2857
iiiiiiii	chr21:37692408-37692711(+)$1	303	31	39	16.4999
oodddd]f	chr11:60673733-60673961(-)$1	228	207	215	16.2857
cc:DDDDG	chr7:66386124-66386422(+)$1	298	189	197	16.2857
CCC}DDDD	chr6:99395581-99395874(-)$1	293	252	260	20.4999
!!ddddnn	chr2:62115535-62115792(-)$1	257	173	181	16.2142

#DB
)).)))))	chr2:102314139-102314510(+)$1	1	88	96	16.2857
))))))))	chr12:53894975-53895338(+)$1	1	70	78	20.4999
))))....	chr14:92587885-92588113(-)$1	1	178	186	16.0714
((((....	chr8:101965420-101965707(-)$1	1	44	52	16.3571
.(((.(((	chr9:111696617-111696910(+)$1	1	0	8	20.4999
)))))..)	chr15:55700339-55700603(-)$1	1	159	167	16.3571
.....)))	chr20:34252576-34252813(-)$1	1	198	206	20.4999
((((.(((	chr16:89627253-89627457(+)$1	1	26	34	16.3571
(((((.((	chr11:68451937-68452231(+)$1	1	79	87	16.3571
.(((((((	chr11:64014143-64014394(-)$1	1	58	66	20.4999
..((.(((	chr8:128748388-128748646(+)$1	1	1	9	16.2857
.(((.(((	chr12:96252740-96252955(+)$1	1	58	66	16.3571
.)))))))	chr14:100842494-100842743(-)$1	1	140	148	16.2857
..((((((	chr1:227505998-227506259(-)$1	1	1	9	20.4999
.(((..((	chr11:64014194-64014430(-)$1	1	94	102	20.4999
))))))))	chr2:238875573-238875825(+)$1	1	225	233	16.1428
((((((((	chr19:1388422-1388659(+)$1	1	11	19	16.4999
((((((..	chr11:85779854-85780221(-)$1	1	13	21	16.0714
((((((((	chr11:2398441-2398687(+)$1	1	11	19	20.4999
((((((((	chr1:114448012-114448297(+)$1	1	11	19	16.2857
.)))))))	chr16:70433079-70433340(-)$1	1	187	195	16.2142
((......	chr3:139108288-139108585(-)$1	1	219	227	16.2142
(((((.(.	chr4:83294986-83295211(-)$1	1	5	13	16.4999
((((....	chr1:202927260-202927516(-)$1	1	95	103	16.2857
(.((..((	chr1:1243046-1243371(-)$1	1	36	44	20.4999
((((((((	chr10:103874559-103874820(-)$1	1	12	20	20.4999
..))))))	chr5:72794262-72794485(+)$1	1	161	169	16.2142
))))))))	chr5:176560763-176561051(+)$1	1	253	261	20.4999
))))))))	chr1:54412012-54412325(+)$1	1	268	276	20.4999
)))).).)	chr5:154134809-154135047(+)$1	1	174	182	20.4999
))))))))	chr11:14521145-14521393(-)$1	1	237	245	16.4999
))))))((	chr1:46768694-46768932(-)$1	1	88	96	16.2142
((((.(((	chr10:120840042-120840310(-)$1	1	2	10	15.7142
(...))))	chr6:167369804-167370140(-)$1	1	31	39	16.1428
((.(((((	chr2:74374852-74375074(-)$1	1	48	56	16.3571
((((..((	chr7:54826772-54827019(-)$1	1	68	76	16.2142
((((((((	chr20:18568601-18568861(+)$1	1	165	173	20.4999
((((.(((	chr3:5229415-5229715(+)$1	1	6	14	16.2857
......))	chr18:43678036-43678311(-)$1	1	208	216	16.4999
(((((.((	chr6:125474858-125475217(+)$1	1	46	54	16.3571
((((((.(	chr6:33281783-33282098(-)$1	1	15	23	20.4999
((((.(.(	chr22:38203862-38204145(+)$1	1	96	104	15.7142
))))))).	chr19:36036499-36036746(+)$1	1	118	126	16.0714
))))))))	chr9:139685720-139685977(+)$1	1	210	218	15.9999
((((((((	chr9:139744405-139744661(+)$1	1	120	128	16.3571
)))))).)	chr9:116172420-116172731(-)$1	1	235	243	16.3571
.)))).))	chr19:19144145-19144419(-)$1	1	140	148	16.1428
))(((((.	chr6:35265526-35265830(+)$1	1	90	98	16.2142
))))))).	chr19:39926387-39926596(-)$1	1	133	141	16.4999
).)))...	chr2:26257007-26257262(+)$1	1	193	201	16.4999
)))))).)	chr19:2456603-2456973(-)$1	1	329	337	20.4999
)))..)))	chr5:218340-218634(+)$1	1	214	222	20.4999
))))))))	chr15:76196143-76196545(+)$1	1	363	371	16.0714
....))))	chr1:36689939-36690210(+)$1	1	98	106	20.4999
((((((((	chr8:57124219-57124497(+)$1	1	50	58	16.2142
))))))))	chr19:54693137-54693393(-)$1	1	124	132	20.4999
...(((((	chr11:118272264-118272479(+)$1	1	35	43	15.7142
(((((.((	chr16:67260963-67261228(+)$1	1	3	11	20.4999
.((..(((	chr2:183902833-183903101(-)$1	1	15	23	16.4999
)))))).)	chr7:66386222-66386485(+)$1	1	219	227	20.4999
(((.((((	chr16:29817807-29818052(+)$1	1	62	70	15.7142
(((.((((	chr17:73900651-73900901(-)$1	1	33	41	16.3571
)))).)))	chr16:75600276-75600519(+)$1	1	173	181	16.2142
(((((...	chr3:43732400-43732633(+)$1	1	184	192	16.2857
))).))))	chr2:55459878-55460108(+)$1	1	134	142	16.2857
((((((((	chr21:37692408-37692711(+)$1	1	31	39	16.4999
..)))).)	chr11:60673733-60673961(-)$1	1	207	215	16.2857
)).)))))	chr7:66386124-66386422(+)$1	1	189	197	16.2857
))).))))	chr6:99395581-99395874(-)$1	1	252	260	20.4999
..((((..	chr2:62115535-62115792(-)$1	1	173	181	16.2142

#PSSM
G : 0.67	g : 0.24	U : 0.02	C : 0.02	A : 0.01	c : 0.01	
G : 0.65	g : 0.24	A : 0.04	C : 0.04	c : 0.01	
G : 0.72	g : 0.24	A : 0.01	c : 0.01	
C : 0.62	c : 0.22	A : 0.05	U : 0.02	u : 0.02	G : 0.02	
G : 0.62	g : 0.25	A : 0.04	C : 0.04	U : 0.02	
G : 0.71	g : 0.25	C : 0.01	A : 0.01	
G : 0.64	g : 0.24	C : 0.05	A : 0.04	a : 0.01	
G : 0.68	g : 0.22	C : 0.05	a : 0.02	

#score	1226.4285714285709
#seq	70
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_UTR_m3_run1.nuc.txt

#NT
GCCUCCCC	chr19:21264914-21265253(+)$1	339	321	329	15.3281
GCCGCCCC	chr19:17972001-17972214(+)$1	213	153	161	19.9375
GCCGUCCC	chr15:69706675-69706916(+)$1	241	87	95	15.4843
CCCGCCCC	chr7:43908954-43909205(-)$1	251	5	13	15.9531
gccggccc	chr8:41435618-41435907(+)$1	289	5	13	15.7968
UCCGCCCC	chr16:2301428-2301681(-)$1	253	52	60	15.9531
GCUGCCCC	chr1:207494923-207495187(+)$1	264	219	227	15.7968
GCCGCCGC	chr9:86322513-86322793(-)$1	280	178	186	17.3593
GCCGCCCC	chr1:154933966-154934355(-)$1	389	317	325	19.9375
GCCACCCC	chr3:150321147-150321378(+)$1	231	162	170	15.2500
GCCGCCCC	chr9:86595332-86595580(-)$1	248	16	24	19.9375
gccgccgc	chr19:16308683-16308983(+)$1	300	107	115	17.3593
GCCGCCCG	chr1:6453216-6453546(-)$1	330	149	157	15.7187
ACCGCCCC	chr17:56160892-56161142(+)$1	250	79	87	15.7187
GCGGCCCC	chr1:150947027-150947328(-)$1	301	203	211	15.7187
GCCUCCCC	chr2:74405797-74406098(-)$1	301	275	283	15.3281
gcugcccc	chr6:35656478-35656798(-)$1	320	68	76	15.7968
GCCGGCCC	chr21:35747720-35747967(+)$1	247	219	227	15.7968
GCCGCCCC	chr17:79650465-79650729(-)$1	264	142	150	19.9375
GCCGCCCC	chr12:80328637-80328911(-)$1	274	26	34	19.9375
GCCGCCGC	chr15:77363171-77363439(-)$1	268	69	77	17.3593
gccgccgc	chrX:153718681-153718934(-)$1	253	92	100	17.3593
UCCGCCCC	chr7:100033870-100034177(-)$1	307	35	43	15.9531
GCCGCCCC	chr8:74206770-74207047(+)$1	277	236	244	19.9375
gccgcccc	chr16:1359545-1359828(+)$1	283	170	178	19.9375
gccgcccc	chr22:19705913-19706286(+)$1	373	20	28	19.9375
GCCGCCGC	chr4:122744861-122745147(-)$1	286	98	106	17.3593
GCCGCCGC	chr20:35401956-35402262(-)$1	306	265	273	17.3593
gccgcccc	chr1:180471489-180471814(-)$1	325	41	49	19.9375
GCCGCCGC	chr5:134369683-134370007(-)$1	324	245	253	17.3593
GCCGCCCC	chr7:16685772-16686029(+)$1	257	198	206	19.9375
gccgccgc	chr6:163835644-163835905(+)$1	261	6	14	17.3593
GCUGCCCC	chr16:740151-740459(-)$1	308	133	141	15.7968
GACGCCCC	chr19:1478780-1479004(-)$1	224	65	73	15.2500
GGCGCCCC	chr22:19949949-19950178(+)$1	229	74	82	15.3281
GCCGCCUC	chr19:11665005-11665281(-)$1	276	145	153	16.5000
GCCGCCCG	chr22:19711297-19711565(+)$1	268	127	135	15.7187
GCCGCCGC	chr2:162164981-162165216(+)$1	235	184	192	17.3593
CCCGCCCC	chr2:130939734-130939976(+)$1	242	1	9	15.9531
GCGGCCCC	chr22:29999530-29999906(+)$1	376	83	91	15.7187
GCGGCCCC	chr17:7387590-7387859(+)$1	269	6	14	15.7187
GGCGCCCC	chr2:237994458-237994758(+)$1	300	9	17	15.3281
UCCGCCCC	chr8:124286410-124286736(-)$1	326	58	66	15.9531
GCCGCCGC	chr2:176046291-176046529(-)$1	238	124	132	17.3593
UCCGCCCC	chr2:27294181-27294431(-)$1	250	228	236	15.9531
gccgccgc	chrX:153362958-153363259(-)$1	301	140	148	17.3593
GCCGCCCC	chrX:37544931-37545298(+)$1	367	88	96	19.9375
GCCGCGCC	chr20:44718393-44718678(-)$1	285	35	43	15.2500
GCCGCCGC	chr13:31735770-31736044(-)$1	274	125	133	17.3593
GCCGGCCC	chr19:19779543-19779867(+)$1	324	93	101	15.7968
GCCGCCUC	chr2:44222913-44223162(-)$1	249	181	189	16.5000
GCCGCCCG	chr8:26148940-26149250(+)$1	310	0	8	15.7187
GCCGCCCC	chr16:103741-104006(+)$1	265	31	39	19.9375
GCCGCGCC	chr8:142431445-142431707(+)$1	262	122	130	15.2500
GCCGCCCG	chr15:66679245-66679527(+)$1	282	105	113	15.7187
cccgcccc	chr12:121148154-121148476(+)$1	322	5	13	15.9531
gcugcccc	chr10:49514627-49514920(+)$1	293	0	8	15.7968
CCCGCCCC	chr2:26467703-26467960(+)$1	257	74	82	15.9531
GCCGCCCG	chr17:38136988-38137314(+)$1	326	285	293	15.7187
gccgccgc	chr9:127951822-127952104(-)$1	282	49	57	17.3593
GCCGCCGC	chr1:53703931-53704287(-)$1	356	82	90	17.3593
GCCGGCCC	chr1:153949920-153950162(-)$1	242	172	180	15.7968
GCCGCCUC	chr11:13484538-13484864(-)$1	326	98	106	16.5000

#otherMatches

#Struct PSSM
ddddccc3	chr6:41040624-41040924(+)$1	300	233	241	15.7968
GGGGG}EE	chr19:21264914-21265253(+)$1	339	321	329	15.3281
bb]bbccc	chr19:17972001-17972214(+)$1	213	153	161	19.9375
bb!!cccc	chr15:69706675-69706916(+)$1	241	87	95	15.4843
HHHHHH{B	chr7:43908954-43909205(-)$1	251	5	13	15.9531
dddd[iii	chr8:41435618-41435907(+)$1	289	5	13	15.7968
hhhhhhhh	chr16:2301428-2301681(-)$1	253	52	60	15.9531
ccc[dddd	chr1:207494923-207495187(+)$1	264	219	227	15.7968
hhhhhfff	chr9:86322513-86322793(-)$1	280	178	186	17.3593
FFFFFFZZ	chr1:154933966-154934355(-)$1	389	317	325	19.9375
dddd"""e	chr3:150321147-150321378(+)$1	231	162	170	15.2500
BKKEEEEE	chr9:86595332-86595580(-)$1	248	16	24	19.9375
ee:DDDD}	chr19:16308683-16308983(+)$1	300	107	115	17.3593
d22eeeee	chr1:6453216-6453546(-)$1	330	149	157	15.7187
qqqqqeee	chr17:56160892-56161142(+)$1	250	79	87	15.7187
:FFFFFFB	chr1:150947027-150947328(-)$1	301	203	211	15.7187
eeee::::	chr2:74405797-74406098(-)$1	301	275	283	15.3281
LCCCABBE	chr6:35656478-35656798(-)$1	320	68	76	15.7968
FFFFFYYD	chr21:35747720-35747967(+)$1	247	219	227	15.7968
ccc[dddd	chr17:79650465-79650729(-)$1	264	142	150	19.9375
g!!ccc!!	chr12:80328637-80328911(-)$1	274	26	34	19.9375
dmmmmddd	chr15:77363171-77363439(-)$1	268	69	77	17.3593
JJHHHHHH	chrX:153718681-153718934(-)$1	253	92	100	17.3593
:ggggggg	chr7:100033870-100034177(-)$1	307	35	43	15.9531
cc22eeee	chr8:74206770-74207047(+)$1	277	236	244	19.9375
dd[fffff	chr16:1359545-1359828(+)$1	283	170	178	19.9375
ccc]bb]g	chr22:19705913-19706286(+)$1	373	20	28	19.9375
eeeddddl	chr4:122744861-122745147(-)$1	286	98	106	17.3593
f:eeeeeu	chr20:35401956-35402262(-)$1	306	265	273	17.3593
ddddtttt	chr1:180471489-180471814(-)$1	325	41	49	19.9375
d"""gggg	chr5:134369683-134370007(-)$1	324	245	253	17.3593
BBCCCZZZ	chr7:16685772-16686029(+)$1	257	198	206	19.9375
JJJJJJJJ	chr6:163835644-163835905(+)$1	261	6	14	17.3593
fffooooo	chr16:740151-740459(-)$1	308	133	141	15.7968
b[cccqqq	chr19:1478780-1479004(-)$1	224	65	73	15.2500
cbb]bbcc	chr22:19949949-19950178(+)$1	229	74	82	15.3281
a!!dddd!	chr19:11665005-11665281(-)$1	276	145	153	16.5000
bb[bb!!d	chr22:19711297-19711565(+)$1	268	127	135	15.7187
cc]ccc55	chr2:162164981-162165216(+)$1	235	184	192	17.3593
CCKKA{DD	chr2:130939734-130939976(+)$1	242	1	9	15.9531
eee4444d	chr22:29999530-29999906(+)$1	376	83	91	15.7187
cccmmmmc	chr17:7387590-7387859(+)$1	269	6	14	15.7187
A{FFFFFF	chr2:237994458-237994758(+)$1	300	9	17	15.3281
ddddmmmm	chr8:124286410-124286736(-)$1	326	58	66	15.9531
eee[dddd	chr2:176046291-176046529(-)$1	238	124	132	17.3593
cccCCCZZ	chr2:27294181-27294431(-)$1	250	228	236	15.9531
ccc[bb[b	chrX:153362958-153363259(-)$1	301	140	148	17.3593
iiiibb&&	chrX:37544931-37545298(+)$1	367	88	96	19.9375
{HHHHHHH	chr20:44718393-44718678(-)$1	285	35	43	15.2500
iiiiiiii	chr13:31735770-31736044(-)$1	274	125	133	17.3593
:dddd[cc	chr19:19779543-19779867(+)$1	324	93	101	15.7968
bb[bb"""	chr2:44222913-44223162(-)$1	249	181	189	16.5000
::::::DD	chr8:26148940-26149250(+)$1	310	0	8	15.7187
CCCKKGGG	chr16:103741-104006(+)$1	265	31	39	19.9375
bb[bbccc	chr8:142431445-142431707(+)$1	262	122	130	15.2500
HHHHHHZZ	chr15:66679245-66679527(+)$1	282	105	113	15.7187
GG{CCCBB	chr12:121148154-121148476(+)$1	322	5	13	15.9531
DDDD{DDD	chr10:49514627-49514920(+)$1	293	0	8	15.7968
eeqqqqqq	chr2:26467703-26467960(+)$1	257	74	82	15.9531
c]dddd:G	chr17:38136988-38137314(+)$1	326	285	293	15.7187
dddd::bb	chr9:127951822-127952104(-)$1	282	49	57	17.3593
ggggggg#	chr1:53703931-53704287(-)$1	356	82	90	17.3593
b]gggggg	chr1:153949920-153950162(-)$1	242	172	180	15.7968
iiiiiiii	chr11:13484538-13484864(-)$1	326	98	106	16.5000

#DB
))))))).	chr6:41040624-41040924(+)$1	1	233	241	15.7968
))))).))	chr19:21264914-21265253(+)$1	1	321	329	15.3281
)).)))))	chr19:17972001-17972214(+)$1	1	153	161	19.9375
((..((((	chr15:69706675-69706916(+)$1	1	87	95	15.4843
((((((.(	chr7:43908954-43909205(-)$1	1	5	13	15.9531
((((.(((	chr8:41435618-41435907(+)$1	1	5	13	15.7968
))))))))	chr16:2301428-2301681(-)$1	1	52	60	15.9531
(((.((((	chr1:207494923-207495187(+)$1	1	219	227	15.7968
((((((((	chr9:86322513-86322793(-)$1	1	178	186	17.3593
))))))..	chr1:154933966-154934355(-)$1	1	317	325	19.9375
((((...(	chr3:150321147-150321378(+)$1	1	162	170	15.2500
(..(((((	chr9:86595332-86595580(-)$1	1	16	24	19.9375
)).)))).	chr19:16308683-16308983(+)$1	1	107	115	17.3593
)..)))))	chr1:6453216-6453546(-)$1	1	149	157	15.7187
.....)))	chr17:56160892-56161142(+)$1	1	79	87	15.7187
.)))))))	chr1:150947027-150947328(-)$1	1	203	211	15.7187
))))....	chr2:74405797-74406098(-)$1	1	275	283	15.3281
.(((((((	chr6:35656478-35656798(-)$1	1	68	76	15.7968
)))))..)	chr21:35747720-35747967(+)$1	1	219	227	15.7968
(((.((((	chr17:79650465-79650729(-)$1	1	142	150	19.9375
(..(((..	chr12:80328637-80328911(-)$1	1	26	34	19.9375
(....)))	chr15:77363171-77363439(-)$1	1	69	77	17.3593
((((((((	chrX:153718681-153718934(-)$1	1	92	100	17.3593
.(((((((	chr7:100033870-100034177(-)$1	1	35	43	15.9531
))..))))	chr8:74206770-74207047(+)$1	1	236	244	19.9375
((.(((((	chr16:1359545-1359828(+)$1	1	170	178	19.9375
))).)).)	chr22:19705913-19706286(+)$1	1	20	28	19.9375
(((((((.	chr4:122744861-122745147(-)$1	1	98	106	17.3593
).(((((.	chr20:35401956-35402262(-)$1	1	265	273	17.3593
((((....	chr1:180471489-180471814(-)$1	1	41	49	19.9375
(...((((	chr5:134369683-134370007(-)$1	1	245	253	17.3593
)))))...	chr7:16685772-16686029(+)$1	1	198	206	19.9375
((((((((	chr6:163835644-163835905(+)$1	1	6	14	17.3593
(((.....	chr16:740151-740459(-)$1	1	133	141	15.7968
(.(((...	chr19:1478780-1479004(-)$1	1	65	73	15.2500
))).))))	chr22:19949949-19950178(+)$1	1	74	82	15.3281
(..((((.	chr19:11665005-11665281(-)$1	1	145	153	16.5000
((.((..(	chr22:19711297-19711565(+)$1	1	127	135	15.7187
)).)))..	chr2:162164981-162165216(+)$1	1	184	192	17.3593
((..(.((	chr2:130939734-130939976(+)$1	1	1	9	15.9531
)))....)	chr22:29999530-29999906(+)$1	1	83	91	15.7187
(((....)	chr17:7387590-7387859(+)$1	1	6	14	15.7187
(.((((((	chr2:237994458-237994758(+)$1	1	9	17	15.3281
((((....	chr8:124286410-124286736(-)$1	1	58	66	15.9531
(((.((((	chr2:176046291-176046529(-)$1	1	124	132	17.3593
))))))..	chr2:27294181-27294431(-)$1	1	228	236	15.9531
(((.((.(	chrX:153362958-153363259(-)$1	1	140	148	17.3593
((((((..	chrX:37544931-37545298(+)$1	1	88	96	19.9375
.(((((((	chr20:44718393-44718678(-)$1	1	35	43	15.2500
((((((((	chr13:31735770-31736044(-)$1	1	125	133	17.3593
.((((.((	chr19:19779543-19779867(+)$1	1	93	101	15.7968
((.((...	chr2:44222913-44223162(-)$1	1	181	189	16.5000
......((	chr8:26148940-26149250(+)$1	1	0	8	15.7187
(((..(((	chr16:103741-104006(+)$1	1	31	39	19.9375
((.(((((	chr8:142431445-142431707(+)$1	1	122	130	15.2500
))))))..	chr15:66679245-66679527(+)$1	1	105	113	15.7187
((.(((((	chr12:121148154-121148476(+)$1	1	5	13	15.9531
((((.(((	chr10:49514627-49514920(+)$1	1	0	8	15.7968
((......	chr2:26467703-26467960(+)$1	1	74	82	15.9531
).)))).)	chr17:38136988-38137314(+)$1	1	285	293	15.7187
))))..((	chr9:127951822-127952104(-)$1	1	49	57	17.3593
(((((((.	chr1:53703931-53704287(-)$1	1	82	90	17.3593
).))))))	chr1:153949920-153950162(-)$1	1	172	180	15.7968
))))))))	chr11:13484538-13484864(-)$1	1	98	106	16.5000

#PSSM
G : 0.68	g : 0.17	U : 0.06	C : 0.04	A : 0.01	c : 0.01	
C : 0.76	c : 0.18	G : 0.03	A : 0.01	
C : 0.73	c : 0.15	G : 0.04	U : 0.03	u : 0.03	
G : 0.76	g : 0.18	U : 0.03	A : 0.01	
C : 0.73	c : 0.17	G : 0.06	U : 0.01	g : 0.01	
C : 0.78	c : 0.18	G : 0.03	
C : 0.62	G : 0.14	c : 0.10	g : 0.07	U : 0.04	
C : 0.73	c : 0.18	G : 0.07	

#score	1080.84375
#seq	64
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_CDS_m2_run2.nuc.txt

#NT
CUGGGCC	chr20:34287523-34287771(+)$1	248	2	9	17.1029
CAGGGCC	chr16:28847591-28847984(+)$1	393	234	241	13.1323
CUGGGCC	chr17:1945974-1946293(+)$1	319	130	137	17.1029
CUGGACC	chr17:1657707-1657931(+)$1	224	153	160	12.9852
CUGUGCC	chr1:156219621-156219878(-)$1	257	232	239	13.8676
CUGGCCC	chr19:1578335-1578592(-)$1	257	137	144	13.3529
CUGGGCC	chr19:55964454-55964798(-)$1	344	85	92	17.1029
CGGGGCC	chr22:41972966-41973400(-)$1	434	80	87	13.1323
CUGGACC	chr12:120534700-120534953(-)$1	253	138	145	12.9852
GUGGGCC	chr3:9957082-9957418(+)$1	336	7	14	13.0588
CGGGGCC	chr11:60703431-60703743(+)$1	312	123	130	13.1323
CUGAGCC	chr19:6414021-6414280(-)$1	259	15	22	13.7941
CUGUGCC	chr22:39131921-39132222(-)$1	301	162	169	13.8676
CUGGGCC	chr16:31143220-31143488(-)$1	268	111	118	17.1029
CUGGGCA	chr2:242757636-242757874(+)$1	238	15	22	12.9852
CUGCGCC	chr20:60962580-60962806(+)$1	226	67	74	13.6470
CUGCGCC	chr12:56510457-56510691(+)$1	234	107	114	13.6470
CGGGGCC	chr12:120534321-120534639(-)$1	318	135	142	13.1323
CUGUGCC	chr20:25207096-25207378(+)$1	282	13	20	13.8676
CUGGGCC	chr19:18279955-18280242(+)$1	287	181	188	17.1029
CUGUGCC	chr17:79826298-79826577(-)$1	279	104	111	13.8676
CUGGGCG	chr9:140351996-140352290(-)$1	294	271	278	12.8382
CUGGGCC	chr15:44085986-44086259(+)$1	273	163	170	17.1029
UUGGGCC	chr5:176524512-176524797(+)$1	285	204	211	12.8382
CUGGCCC	chr14:99983390-99983613(-)$1	223	0	7	13.3529
GUGGGCC	chr1:19200853-19201123(-)$1	270	130	137	13.0588
AUGGGCC	chr17:79918554-79918788(-)$1	234	3	10	12.7647
CUGGCCC	chr16:1496403-1496668(-)$1	265	22	29	13.3529
CCGGGCC	chr17:79826152-79826430(-)$1	278	112	119	12.9852
cuggccc	chr17:80006519-80006754(-)$1	235	14	21	13.3529
CUGGGCA	chr19:3543342-3543622(-)$1	280	14	21	12.9852
CAGGGCC	chr5:132202476-132202766(+)$1	290	81	88	13.1323
CUGAGCC	chr2:220085427-220085681(-)$1	254	157	164	13.7941
CUGGGCC	chr20:61919628-61919960(+)$1	332	143	150	17.1029
CUGAGCC	chr22:24125816-24126165(+)$1	349	17	24	13.7941
CUGCGCC	chr20:60962608-60962830(+)$1	222	39	46	13.6470
CUGGGCU	chr1:1288554-1288815(-)$1	261	109	116	12.8382
CUGGGCC	chr19:2321491-2321812(-)$1	321	32	39	17.1029
CUGGGCC	chr9:140003209-140003493(+)$1	284	37	44	17.1029
CUGGCCC	chr6:34213122-34213374(+)$1	252	62	69	13.3529
CUGGGCC	chr16:1496098-1496378(-)$1	280	245	252	17.1029
CUGAGCC	chr17:79826501-79826765(-)$1	264	10	17	13.7941
CUGAGCC	chr20:25206864-25207249(+)$1	385	152	159	13.7941
GUGGGCC	chr17:80197139-80197356(+)$1	217	48	55	13.0588
CUGUGCC	chr22:24125602-24125869(+)$1	267	98	105	13.8676
CAGGGCC	chr16:1496230-1496489(-)$1	259	179	186	13.1323
CUGUGCC	chr1:156219556-156219821(-)$1	265	175	182	13.8676
CUGGGCA	chr22:50297121-50297468(-)$1	347	95	102	12.9852
CUGGGCC	chr12:125262895-125263167(-)$1	272	72	79	17.1029
CUGGGCU	chr15:89174209-89174464(+)$1	255	134	141	12.8382
CUGGCCC	chr2:242511640-242511873(+)$1	233	223	230	13.3529
CAGGGCC	chr7:149576355-149576653(+)$1	298	192	199	13.1323
CUGGGCC	chr11:64532871-64533151(-)$1	280	5	12	17.1029
UUGGGCC	chr17:73314717-73314975(-)$1	258	99	106	12.8382
GUGGGCC	chr19:42411249-42411647(+)$1	398	113	120	13.0588
CUGGGCG	chr3:9956970-9957278(+)$1	308	62	69	12.8382
CGGGGCC	chrX:48761732-48761990(-)$1	258	71	78	13.1323
CUGAGCC	chr9:139958955-139959219(-)$1	264	64	71	13.7941
CUGCGCC	chr17:37903027-37903312(+)$1	285	90	97	13.6470
CUGGCCC	chr11:60704134-60704380(+)$1	246	23	30	13.3529
CCGGGCC	chr20:25207178-25207426(+)$1	248	41	48	12.9852
CUGUGCC	chr17:79826230-79826498(-)$1	268	25	32	13.8676
GUGGGCC	chr17:80196510-80196756(+)$1	246	11	18	13.0588
CUGGUCC	chr17:79826382-79826635(-)$1	253	4	11	12.9117
CUGGGCC	chr19:1581150-1581368(-)$1	218	38	45	17.1029
CUGGGCC	chr19:47341401-47341808(-)$1	407	231	238	17.1029
CUGGGCC	chr16:417363-417709(-)$1	346	216	223	17.1029

#otherMatches

#Struct PSSM
eeeee!!	chr17:75493301-75493545(+)$1	244	16	23	12.9852
GGGGGGG	chr20:34287523-34287771(+)$1	248	2	9	17.1029
a]cccaa	chr16:28847591-28847984(+)$1	393	234	241	13.1323
"""ccc[	chr17:1945974-1946293(+)$1	319	130	137	17.1029
JJcccqq	chr17:1657707-1657931(+)$1	224	153	160	12.9852
ffff:::	chr1:156219621-156219878(-)$1	257	232	239	13.8676
fffffbb	chr19:1578335-1578592(-)$1	257	137	144	13.3529
dddd[cc	chr19:55964454-55964798(-)$1	344	85	92	17.1029
nna]ccc	chr22:41972966-41973400(-)$1	434	80	87	13.1323
f]ccc33	chr12:120534700-120534953(-)$1	253	138	145	12.9852
mmmmbb]	chr3:9957082-9957418(+)$1	336	7	14	13.0588
cc22iii	chr11:60703431-60703743(+)$1	312	123	130	13.1323
fffqqqq	chr19:6414021-6414280(-)$1	259	15	22	13.7941
feeeee[	chr22:39131921-39132222(-)$1	301	162	169	13.8676
FFFFFee	chr16:31143220-31143488(-)$1	268	111	118	17.1029
IIII{DD	chr2:242757636-242757874(+)$1	238	15	22	12.9852
nncccCC	chr20:60962580-60962806(+)$1	226	67	74	13.6470
fffff44	chr12:56510457-56510691(+)$1	234	107	114	13.6470
eeee!!b	chr12:120534321-120534639(-)$1	318	135	142	13.1323
fff[ccc	chr20:25207096-25207378(+)$1	282	13	20	13.8676
ggggbb!	chr19:18279955-18280242(+)$1	287	181	188	17.1029
ccc%%%%	chr17:79826298-79826577(-)$1	279	104	111	13.8676
dd[eeee	chr9:140351996-140352290(-)$1	294	271	278	12.8382
hhhhhnn	chr15:44085986-44086259(+)$1	273	163	170	17.1029
cqqqqqq	chr5:176524512-176524797(+)$1	285	204	211	12.8382
::ggggg	chr14:99983390-99983613(-)$1	223	0	7	13.3529
ooggggg	chr1:19200853-19201123(-)$1	270	130	137	13.0588
lllccc:	chr17:79918554-79918788(-)$1	234	3	10	12.7647
EEEE{BB	chr16:1496403-1496668(-)$1	265	22	29	13.3529
f!!eeee	chr17:79826152-79826430(-)$1	278	112	119	12.9852
::BBKKF	chr17:80006519-80006754(-)$1	235	14	21	13.3529
J::dddd	chr19:3543342-3543622(-)$1	280	14	21	12.9852
F{EEEEE	chr5:132202476-132202766(+)$1	290	81	88	13.1323
bcccccc	chr2:220085427-220085681(-)$1	254	157	164	13.7941
BBccc[a	chr20:61919628-61919960(+)$1	332	143	150	17.1029
oooooii	chr22:24125816-24126165(+)$1	349	17	24	13.7941
DDDD{CC	chr20:60962608-60962830(+)$1	222	39	46	13.6470
&eeeeel	chr1:1288554-1288815(-)$1	261	109	116	12.8382
eeeeecc	chr19:2321491-2321812(-)$1	321	32	39	17.1029
E:HHHHH	chr9:140003209-140003493(+)$1	284	37	44	17.1029
{EEEEEK	chr6:34213122-34213374(+)$1	252	62	69	13.3529
JJJJJdd	chr16:1496098-1496378(-)$1	280	245	252	17.1029
CCEEEEE	chr17:79826501-79826765(-)$1	264	10	17	13.7941
BB{CCC{	chr20:25206864-25207249(+)$1	385	152	159	13.7941
hheeeee	chr17:80197139-80197356(+)$1	217	48	55	13.0588
iiiiii]	chr22:24125602-24125869(+)$1	267	98	105	13.8676
JJJJJ::	chr16:1496230-1496489(-)$1	259	179	186	13.1323
dddd[==	chr1:156219556-156219821(-)$1	265	175	182	13.8676
FFFFFFe	chr22:50297121-50297468(-)$1	347	95	102	12.9852
FFFFFYY	chr12:125262895-125263167(-)$1	272	72	79	17.1029
fffff:e	chr15:89174209-89174464(+)$1	255	134	141	12.8382
C}GGGGG	chr2:242511640-242511873(+)$1	233	223	230	13.3529
iiiiiii	chr7:149576355-149576653(+)$1	298	192	199	13.1323
IIIIIII	chr11:64532871-64533151(-)$1	280	5	12	17.1029
2ddddII	chr17:73314717-73314975(-)$1	258	99	106	12.8382
D{DDDDB	chr19:42411249-42411647(+)$1	398	113	120	13.0588
gg:====	chr3:9956970-9957278(+)$1	308	62	69	12.8382
heeeeel	chrX:48761732-48761990(-)$1	258	71	78	13.1323
dddoooo	chr9:139958955-139959219(-)$1	264	64	71	13.7941
ddda]dd	chr17:37903027-37903312(+)$1	285	90	97	13.6470
F{CCCbb	chr11:60704134-60704380(+)$1	246	23	30	13.3529
eeeeeea	chr20:25207178-25207426(+)$1	248	41	48	12.9852
ccc%%%%	chr17:79826230-79826498(-)$1	268	25	32	13.8676
ffffffc	chr17:80196510-80196756(+)$1	246	11	18	13.0588
::CCCKK	chr17:79826382-79826635(-)$1	253	4	11	12.9117
mmggggg	chr19:1581150-1581368(-)$1	218	38	45	17.1029
::HHHHH	chr19:47341401-47341808(-)$1	407	231	238	17.1029
eeeeell	chr16:417363-417709(-)$1	346	216	223	17.1029

#DB
(((((..	chr17:75493301-75493545(+)$1	1	16	23	12.9852
(((((((	chr20:34287523-34287771(+)$1	1	2	9	17.1029
).)))))	chr16:28847591-28847984(+)$1	1	234	241	13.1323
...(((.	chr17:1945974-1946293(+)$1	1	130	137	17.1029
(((((..	chr17:1657707-1657931(+)$1	1	153	160	12.9852
))))...	chr1:156219621-156219878(-)$1	1	232	239	13.8676
)))))))	chr19:1578335-1578592(-)$1	1	137	144	13.3529
((((.((	chr19:55964454-55964798(-)$1	1	85	92	17.1029
..).)))	chr22:41972966-41973400(-)$1	1	80	87	13.1323
).)))..	chr12:120534700-120534953(-)$1	1	138	145	12.9852
....)).	chr3:9957082-9957418(+)$1	1	7	14	13.0588
))..)))	chr11:60703431-60703743(+)$1	1	123	130	13.1323
(((....	chr19:6414021-6414280(-)$1	1	15	22	13.7941
((((((.	chr22:39131921-39132222(-)$1	1	162	169	13.8676
)))))((	chr16:31143220-31143488(-)$1	1	111	118	17.1029
((((.((	chr2:242757636-242757874(+)$1	1	15	22	12.9852
..)))((	chr20:60962580-60962806(+)$1	1	67	74	13.6470
)))))..	chr12:56510457-56510691(+)$1	1	107	114	13.6470
((((..(	chr12:120534321-120534639(-)$1	1	135	142	13.1323
(((.(((	chr20:25207096-25207378(+)$1	1	13	20	13.8676
((((((.	chr19:18279955-18280242(+)$1	1	181	188	17.1029
(((....	chr17:79826298-79826577(-)$1	1	104	111	13.8676
((.((((	chr9:140351996-140352290(-)$1	1	271	278	12.8382
(((((..	chr15:44085986-44086259(+)$1	1	163	170	17.1029
(......	chr5:176524512-176524797(+)$1	1	204	211	12.8382
..(((((	chr14:99983390-99983613(-)$1	1	0	7	13.3529
..)))))	chr1:19200853-19201123(-)$1	1	130	137	13.0588
...))).	chr17:79918554-79918788(-)$1	1	3	10	12.7647
((((.((	chr16:1496403-1496668(-)$1	1	22	29	13.3529
(..((((	chr17:79826152-79826430(-)$1	1	112	119	12.9852
..((..(	chr17:80006519-80006754(-)$1	1	14	21	13.3529
(..((((	chr19:3543342-3543622(-)$1	1	14	21	12.9852
(.(((((	chr5:132202476-132202766(+)$1	1	81	88	13.1323
)))))))	chr2:220085427-220085681(-)$1	1	157	164	13.7941
(((((.(	chr20:61919628-61919960(+)$1	1	143	150	17.1029
.....))	chr22:24125816-24126165(+)$1	1	17	24	13.7941
((((.((	chr20:60962608-60962830(+)$1	1	39	46	13.6470
.(((((.	chr1:1288554-1288815(-)$1	1	109	116	12.8382
)))))))	chr19:2321491-2321812(-)$1	1	32	39	17.1029
(.(((((	chr9:140003209-140003493(+)$1	1	37	44	17.1029
.(((((.	chr6:34213122-34213374(+)$1	1	62	69	13.3529
)))))((	chr16:1496098-1496378(-)$1	1	245	252	17.1029
(((((((	chr17:79826501-79826765(-)$1	1	10	17	13.7941
((.(((.	chr20:25206864-25207249(+)$1	1	152	159	13.7941
(((((((	chr17:80197139-80197356(+)$1	1	48	55	13.0588
)))))).	chr22:24125602-24125869(+)$1	1	98	105	13.8676
(((((..	chr16:1496230-1496489(-)$1	1	179	186	13.1323
((((.((	chr1:156219556-156219821(-)$1	1	175	182	13.8676
(((((((	chr22:50297121-50297468(-)$1	1	95	102	12.9852
)))))..	chr12:125262895-125263167(-)$1	1	72	79	17.1029
))))).(	chr15:89174209-89174464(+)$1	1	134	141	12.8382
).)))))	chr2:242511640-242511873(+)$1	1	223	230	13.3529
(((((((	chr7:149576355-149576653(+)$1	1	192	199	13.1323
(((((((	chr11:64532871-64533151(-)$1	1	5	12	17.1029
.))))))	chr17:73314717-73314975(-)$1	1	99	106	12.8382
(.(((((	chr19:42411249-42411647(+)$1	1	113	120	13.0588
)).((((	chr3:9956970-9957278(+)$1	1	62	69	12.8382
)(((((.	chrX:48761732-48761990(-)$1	1	71	78	13.1323
(((....	chr9:139958955-139959219(-)$1	1	64	71	13.7941
)))).))	chr17:37903027-37903312(+)$1	1	90	97	13.6470
(.(((((	chr11:60704134-60704380(+)$1	1	23	30	13.3529
)((((((	chr20:25207178-25207426(+)$1	1	41	48	12.9852
(((....	chr17:79826230-79826498(-)$1	1	25	32	13.8676
(((((((	chr17:80196510-80196756(+)$1	1	11	18	13.0588
..(((..	chr17:79826382-79826635(-)$1	1	4	11	12.9117
..)))))	chr19:1581150-1581368(-)$1	1	38	45	17.1029
..(((((	chr19:47341401-47341808(-)$1	1	231	238	17.1029
(((((..	chr16:417363-417709(-)$1	1	216	223	17.1029

#PSSM
C : 0.86	G : 0.07	U : 0.02	A : 0.01	c : 0.01	
U : 0.83	A : 0.05	G : 0.05	C : 0.02	u : 0.01	
G : 0.98	g : 0.01	
G : 0.73	U : 0.10	A : 0.08	C : 0.05	g : 0.01	
G : 0.85	C : 0.08	A : 0.02	c : 0.01	U : 0.01	
C : 0.98	c : 0.01	
C : 0.86	A : 0.05	G : 0.02	U : 0.02	c : 0.01	

#score	961.3823529411758
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_transcript_m2_run2.nuc.txt

#NT
GAGGAA	chr4:83350399-83350668(-)$1	269	212	218	14.6406
CAGGAA	chr1:78194004-78194289(-)$1	285	270	276	14.4062
CAGGAA	chr5:39202710-39203089(-)$1	379	115	121	14.4062
UAGGAA	chr17:78265326-78265616(+)$1	290	59	65	13.6250
CAGGAA	chr17:40370014-40370246(-)$1	232	130	136	14.4062
GAGGAA	chr11:77378182-77378473(-)$1	291	50	56	14.6406
UAGGAA	chrX:153674749-153674975(+)$1	226	10	16	13.6250
CAGGAA	chr11:64543860-64544133(-)$1	273	104	110	14.4062
AAGGAA	chr4:666991-667224(-)$1	233	186	192	14.3281
CAGGAA	chr12:56566111-56566374(-)$1	263	139	145	14.4062
GAGGAA	chr17:8395552-8395790(-)$1	238	74	80	14.6406
AAGGAA	chr1:1643726-1643939(-)$1	213	121	127	14.3281
CAGGAA	chr2:17954263-17954508(+)$1	245	96	102	14.4062
AAGGAA	chr17:37360700-37360966(+)$1	266	108	114	14.3281
CAGGAA	chr19:10283689-10283950(-)$1	261	144	150	14.4062
GAGGAA	chr7:99695382-99695632(-)$1	250	195	201	14.6406
AAGGAA	chr2:71650725-71651033(+)$1	308	221	227	14.3281
GAGGAA	chr12:123001812-123002077(-)$1	265	184	190	14.6406
CAGGAA	chr15:91446160-91446403(+)$1	243	144	150	14.4062
GAGGAA	chr1:16257733-16257980(+)$1	247	159	165	14.6406
GAGGAA	chr7:102962276-102962507(-)$1	231	30	36	14.6406
CAGGAA	chr1:168013723-168014005(+)$1	282	137	143	14.4062
GAGGAA	chr17:27409278-27409557(-)$1	279	247	253	14.6406
GAGGAA	chr14:102451923-102452149(+)$1	226	199	205	14.6406
CAGGAA	chr6:44218173-44218381(+)$1	208	40	46	14.4062
GAGGAA	chr6:31785091-31785358(+)$1	267	226	232	14.6406
UAGGAA	chr16:18852785-18853024(-)$1	239	34	40	13.6250
AAGGAA	chr6:161529674-161529964(+)$1	290	133	139	14.3281
GAGGAA	chr22:29695707-29695932(+)$1	225	37	43	14.6406
gaggaa	chr9:138375924-138376208(+)$1	284	184	190	14.6406
CAGGAA	chr17:42963880-42964192(-)$1	312	25	31	14.4062
CAGGAA	chr3:191087606-191087863(+)$1	257	134	140	14.4062
AAGGAA	chr1:78430736-78430980(-)$1	244	100	106	14.3281
GAGGAA	chr13:46543321-46543580(-)$1	259	19	25	14.6406
AAGGAA	chr3:37368843-37369083(+)$1	240	66	72	14.3281
UAGGAA	chr13:114152561-114152827(+)$1	266	92	98	13.6250
UAGGAA	chr12:56498384-56498681(+)$1	297	130	136	13.6250
GAGGAA	chr19:8550386-8550614(+)$1	228	109	115	14.6406
GAGGAA	chr1:35653535-35653784(-)$1	249	100	106	14.6406
CAGGAA	chr16:89383292-89383576(-)$1	284	182	188	14.4062
CAGGAA	chr17:60060353-60060576(-)$1	223	205	211	14.4062
AAGGAA	chr10:115922815-115923162(-)$1	347	201	207	14.3281
CAGGAA	chr1:39785235-39785473(+)$1	238	228	234	14.4062
GAGGAA	chr8:56699475-56699720(+)$1	245	84	90	14.6406
GAGGAA	chr16:70299340-70299583(-)$1	243	127	133	14.6406
AAGGAA	chr3:101311407-101311669(+)$1	262	101	107	14.3281
AAGGAA	chr2:187370396-187370668(+)$1	272	18	24	14.3281
CAGGAA	chr12:56997930-56998162(-)$1	232	123	129	14.4062
UAGGAA	chrX:135323255-135323518(-)$1	263	79	85	13.6250
GAGGAA	chr3:167761093-167761319(-)$1	226	44	50	14.6406
UAGGAA	chr20:39726791-39727063(+)$1	272	60	66	13.6250
AAGGAA	chr1:16258984-16259268(+)$1	284	186	192	14.3281
GAGGAA	chr9:15473999-15474294(-)$1	295	96	102	14.6406
AAGGAA	chr15:93470384-93470644(+)$1	260	167	173	14.3281
UAGGAA	chr2:201726321-201726662(-)$1	341	52	58	13.6250
AAGGAA	chr1:207241417-207241750(+)$1	333	104	110	14.3281
AAGGAA	chr7:91706909-91707185(+)$1	276	130	136	14.3281
AAGGAA	chrX:151124414-151124667(-)$1	253	101	107	14.3281
GAGGAA	chr7:127975926-127976144(-)$1	218	50	56	14.6406
CAGGAA	chr8:144408345-144408612(-)$1	267	95	101	14.4062
GAGGAA	chr2:70890604-70890909(-)$1	305	146	152	14.6406
AAGGAA	chr19:55652150-55652373(-)$1	223	93	99	14.3281
CAGGAA	chr9:95076746-95077001(-)$1	255	216	222	14.4062

#otherMatches

#Struct PSSM
ee]a::	chr7:155493366-155493582(+)$1	216	201	207	14.3281
a22a]e	chr4:83350399-83350668(-)$1	269	212	218	14.6406
cccmmm	chr1:78194004-78194289(-)$1	285	270	276	14.4062
IIIII:	chr5:39202710-39203089(-)$1	379	115	121	14.4062
oobbhh	chr17:78265326-78265616(+)$1	290	59	65	13.6250
eeeee$	chr17:40370014-40370246(-)$1	232	130	136	14.4062
KKAKKA	chr11:77378182-77378473(-)$1	291	50	56	14.6406
:::fff	chrX:153674749-153674975(+)$1	226	10	16	13.6250
ffff^^	chr11:64543860-64544133(-)$1	273	104	110	14.4062
]cccbb	chr4:666991-667224(-)$1	233	186	192	14.3281
ddddmm	chr12:56566111-56566374(-)$1	263	139	145	14.4062
A{EEEE	chr17:8395552-8395790(-)$1	238	74	80	14.6406
::::::	chr1:1643726-1643939(-)$1	213	121	127	14.3281
mfffff	chr2:17954263-17954508(+)$1	245	96	102	14.4062
33hhhh	chr17:37360700-37360966(+)$1	266	108	114	14.3281
eeee::	chr19:10283689-10283950(-)$1	261	144	150	14.4062
!ddddv	chr7:99695382-99695632(-)$1	250	195	201	14.6406
:::ggg	chr2:71650725-71651033(+)$1	308	221	227	14.3281
vvccc5	chr12:123001812-123002077(-)$1	265	184	190	14.6406
e$$$$$	chr15:91446160-91446403(+)$1	243	144	150	14.4062
dccc!!	chr1:16257733-16257980(+)$1	247	159	165	14.6406
JJJJJJ	chr7:102962276-102962507(-)$1	231	30	36	14.6406
e22bbf	chr1:168013723-168014005(+)$1	282	137	143	14.4062
C}CCC:	chr17:27409278-27409557(-)$1	279	247	253	14.6406
eeeee:	chr14:102451923-102452149(+)$1	226	199	205	14.6406
fbbooo	chr6:44218173-44218381(+)$1	208	40	46	14.4062
qqqqqq	chr6:31785091-31785358(+)$1	267	226	232	14.6406
e[cccy	chr16:18852785-18853024(-)$1	239	34	40	13.6250
cccc::	chr6:161529674-161529964(+)$1	290	133	139	14.3281
tttttt	chr22:29695707-29695932(+)$1	225	37	43	14.6406
!!bbll	chr9:138375924-138376208(+)$1	284	184	190	14.6406
BBNNNN	chr17:42963880-42964192(-)$1	312	25	31	14.4062
::CCC}	chr3:191087606-191087863(+)$1	257	134	140	14.4062
:::ccc	chr1:78430736-78430980(-)$1	244	100	106	14.3281
EEENNN	chr13:46543321-46543580(-)$1	259	19	25	14.6406
!cccoo	chr3:37368843-37369083(+)$1	240	66	72	14.3281
]ggggg	chr13:114152561-114152827(+)$1	266	92	98	13.6250
>>>>>>	chr12:56498384-56498681(+)$1	297	130	136	13.6250
[dddd!	chr19:8550386-8550614(+)$1	228	109	115	14.6406
ddd:::	chr1:35653535-35653784(-)$1	249	100	106	14.6406
a]bb::	chr16:89383292-89383576(-)$1	284	182	188	14.4062
[eeeee	chr17:60060353-60060576(-)$1	223	205	211	14.4062
::::::	chr10:115922815-115923162(-)$1	347	201	207	14.3281
~DDDD:	chr1:39785235-39785473(+)$1	238	228	234	14.4062
c]ccc:	chr8:56699475-56699720(+)$1	245	84	90	14.6406
{HHHHH	chr16:70299340-70299583(-)$1	243	127	133	14.6406
eeeee:	chr3:101311407-101311669(+)$1	262	101	107	14.3281
hhhhhr	chr2:187370396-187370668(+)$1	272	18	24	14.3281
dddd::	chr12:56997930-56998162(-)$1	232	123	129	14.4062
IIIIII	chrX:135323255-135323518(-)$1	263	79	85	13.6250
ccc22b	chr3:167761093-167761319(-)$1	226	44	50	14.6406
phhhhh	chr20:39726791-39727063(+)$1	272	60	66	13.6250
~~~~DD	chr1:16258984-16259268(+)$1	284	186	192	14.3281
"cccqq	chr9:15473999-15474294(-)$1	295	96	102	14.6406
::dddd	chr15:93470384-93470644(+)$1	260	167	173	14.3281
"cccrr	chr2:201726321-201726662(-)$1	341	52	58	13.6250
::GGGG	chr1:207241417-207241750(+)$1	333	104	110	14.3281
ccc333	chr7:91706909-91707185(+)$1	276	130	136	14.3281
iiiiii	chrX:151124414-151124667(-)$1	253	101	107	14.3281
dddd::	chr7:127975926-127976144(-)$1	218	50	56	14.6406
%%%%%%	chr8:144408345-144408612(-)$1	267	95	101	14.4062
ddddmm	chr2:70890604-70890909(-)$1	305	146	152	14.6406
ddd333	chr19:55652150-55652373(-)$1	223	93	99	14.3281
mmmddd	chr9:95076746-95077001(-)$1	255	216	222	14.4062

#DB
)).)..	chr7:155493366-155493582(+)$1	1	201	207	14.3281
)..).)	chr4:83350399-83350668(-)$1	1	212	218	14.6406
(((...	chr1:78194004-78194289(-)$1	1	270	276	14.4062
(((((.	chr5:39202710-39203089(-)$1	1	115	121	14.4062
..))))	chr17:78265326-78265616(+)$1	1	59	65	13.6250
(((((.	chr17:40370014-40370246(-)$1	1	130	136	14.4062
..(..(	chr11:77378182-77378473(-)$1	1	50	56	14.6406
...(((	chrX:153674749-153674975(+)$1	1	10	16	13.6250
((((..	chr11:64543860-64544133(-)$1	1	104	110	14.4062
.)))))	chr4:666991-667224(-)$1	1	186	192	14.3281
((((..	chr12:56566111-56566374(-)$1	1	139	145	14.4062
(.((((	chr17:8395552-8395790(-)$1	1	74	80	14.6406
......	chr1:1643726-1643939(-)$1	1	121	127	14.3281
.)))))	chr2:17954263-17954508(+)$1	1	96	102	14.4062
..))))	chr17:37360700-37360966(+)$1	1	108	114	14.3281
))))..	chr19:10283689-10283950(-)$1	1	144	150	14.4062
.((((.	chr7:99695382-99695632(-)$1	1	195	201	14.6406
...(((	chr2:71650725-71651033(+)$1	1	221	227	14.3281
..))).	chr12:123001812-123002077(-)$1	1	184	190	14.6406
(.....	chr15:91446160-91446403(+)$1	1	144	150	14.4062
((((..	chr1:16257733-16257980(+)$1	1	159	165	14.6406
((((((	chr7:102962276-102962507(-)$1	1	30	36	14.6406
)..)))	chr1:168013723-168014005(+)$1	1	137	143	14.4062
).))).	chr17:27409278-27409557(-)$1	1	247	253	14.6406
))))).	chr14:102451923-102452149(+)$1	1	199	205	14.6406
)((...	chr6:44218173-44218381(+)$1	1	40	46	14.4062
......	chr6:31785091-31785358(+)$1	1	226	232	14.6406
(.(((.	chr16:18852785-18853024(-)$1	1	34	40	13.6250
))))..	chr6:161529674-161529964(+)$1	1	133	139	14.3281
......	chr22:29695707-29695932(+)$1	1	37	43	14.6406
..((..	chr9:138375924-138376208(+)$1	1	184	190	14.6406
((....	chr17:42963880-42964192(-)$1	1	25	31	14.4062
..))).	chr3:191087606-191087863(+)$1	1	134	140	14.4062
...(((	chr1:78430736-78430980(-)$1	1	100	106	14.3281
(((...	chr13:46543321-46543580(-)$1	1	19	25	14.6406
.(((..	chr3:37368843-37369083(+)$1	1	66	72	14.3281
.)))))	chr13:114152561-114152827(+)$1	1	92	98	13.6250
......	chr12:56498384-56498681(+)$1	1	130	136	13.6250
.((((.	chr19:8550386-8550614(+)$1	1	109	115	14.6406
)))...	chr1:35653535-35653784(-)$1	1	100	106	14.6406
).))..	chr16:89383292-89383576(-)$1	1	182	188	14.4062
.(((((	chr17:60060353-60060576(-)$1	1	205	211	14.4062
......	chr10:115922815-115923162(-)$1	1	201	207	14.3281
.)))).	chr1:39785235-39785473(+)$1	1	228	234	14.4062
).))).	chr8:56699475-56699720(+)$1	1	84	90	14.6406
.(((((	chr16:70299340-70299583(-)$1	1	127	133	14.6406
))))).	chr3:101311407-101311669(+)$1	1	101	107	14.3281
(((((.	chr2:187370396-187370668(+)$1	1	18	24	14.3281
))))..	chr12:56997930-56998162(-)$1	1	123	129	14.4062
((((((	chrX:135323255-135323518(-)$1	1	79	85	13.6250
)))..)	chr3:167761093-167761319(-)$1	1	44	50	14.6406
.)))))	chr20:39726791-39727063(+)$1	1	60	66	13.6250
....))	chr1:16258984-16259268(+)$1	1	186	192	14.3281
.(((..	chr9:15473999-15474294(-)$1	1	96	102	14.6406
..((((	chr15:93470384-93470644(+)$1	1	167	173	14.3281
.(((..	chr2:201726321-201726662(-)$1	1	52	58	13.6250
..))))	chr1:207241417-207241750(+)$1	1	104	110	14.3281
)))...	chr7:91706909-91707185(+)$1	1	130	136	14.3281
((((((	chrX:151124414-151124667(-)$1	1	101	107	14.3281
))))..	chr7:127975926-127976144(-)$1	1	50	56	14.6406
......	chr8:144408345-144408612(-)$1	1	95	101	14.4062
((((..	chr2:70890604-70890909(-)$1	1	146	152	14.6406
)))...	chr19:55652150-55652373(-)$1	1	93	99	14.3281
...)))	chr9:95076746-95077001(-)$1	1	216	222	14.4062

#PSSM
G : 0.31	C : 0.28	A : 0.26	U : 0.12	g : 0.01	
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	
A : 0.98	a : 0.01	
A : 0.98	a : 0.01	

#score	919.34375
#seq	64
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_CDS_m2_run2.nuc.txt

#NT
CUCA	chr6:56323777-56324029(-)$1	252	85	89	12.0000
CUCA	chr15:90809432-90809656(+)$1	224	204	208	12.0000
CUCA	chr12:124821468-124821722(-)$1	254	11	15	12.0000
CUCA	chr12:111893797-111894103(-)$1	306	17	21	12.0000
CUCA	chr19:15353655-15353926(-)$1	271	153	157	12.0000
CUCA	chr12:46754768-46755018(-)$1	250	134	138	12.0000
CUCA	chr2:21230753-21230980(-)$1	227	48	52	12.0000
CUCA	chr11:102272711-102272997(-)$1	286	136	140	12.0000
CUCA	chr11:57466292-57466560(+)$1	268	35	39	12.0000
CUCA	chr3:99567153-99567393(-)$1	240	26	30	12.0000
CUCA	chr2:216236621-216236838(-)$1	217	78	82	12.0000
CUCA	chr19:6719293-6719514(-)$1	221	52	56	12.0000
CUCA	chr17:15960772-15961056(-)$1	284	85	89	12.0000
CUCA	chr9:74364986-74365243(-)$1	257	0	4	12.0000
CUCA	chr12:971301-971536(+)$1	235	100	104	12.0000
CUCA	chr11:59421372-59421643(-)$1	271	100	104	12.0000
CUCA	chr11:32953262-32953515(+)$1	253	36	40	12.0000
CUCA	chr2:203420060-203420397(+)$1	337	185	189	12.0000
CUCA	chr2:61710980-61711276(-)$1	296	97	101	12.0000
CUCA	chrX:30872671-30872900(-)$1	229	11	15	12.0000
CUCA	chr20:33345087-33345385(-)$1	298	6	10	12.0000
CUCA	chr9:127622361-127622575(-)$1	214	63	67	12.0000
CUCA	chr20:17930741-17930952(-)$1	211	9	13	12.0000
CUCA	chr5:42801110-42801338(-)$1	228	77	81	12.0000
CUCA	chr19:45805775-45806098(+)$1	323	293	297	12.0000
CUCA	chr7:103270350-103270561(-)$1	211	111	115	12.0000
CUCA	chr19:6718157-6718359(-)$1	202	156	160	12.0000
CUCA	chr3:141161963-141162240(+)$1	277	176	180	12.0000
CUCA	chr12:121435418-121435673(+)$1	255	29	33	12.0000
CUCA	chr4:73957659-73957908(-)$1	249	100	104	12.0000
CUCA	chr12:9247574-9247780(-)$1	206	126	130	12.0000
CUCA	chr4:152096284-152096534(-)$1	250	0	4	12.0000
CUCA	chr3:32932939-32933199(+)$1	260	254	258	12.0000
CUCA	chr2:216256380-216256605(-)$1	225	177	181	12.0000
CUCA	chr3:49570246-49570513(+)$1	267	146	150	12.0000
CUCA	chr16:18549745-18550011(-)$1	266	32	36	12.0000
cuca	chr17:38421235-38421499(+)$1	264	257	261	12.0000
CUCA	chr5:78076291-78076543(-)$1	252	28	32	12.0000
CUCA	chrX:71492519-71492722(-)$1	203	145	149	12.0000
CUCA	chr9:110068564-110068821(+)$1	257	129	133	12.0000
CUCA	chr2:21229881-21230100(-)$1	219	73	77	12.0000
CUCA	chr7:77256634-77256940(+)$1	306	26	30	12.0000
CUCA	chr9:111640174-111640397(-)$1	223	132	136	12.0000
CUCA	chr5:42801231-42801450(-)$1	219	20	24	12.0000
CUCA	chr3:52558499-52558779(-)$1	280	104	108	12.0000
CUCA	chr12:9223068-9223274(-)$1	206	95	99	12.0000
CUCA	chr6:24706278-24706557(-)$1	279	133	137	12.0000
CUCA	chr7:139299087-139299313(-)$1	226	24	28	12.0000
CUCA	chr6:155126462-155126721(+)$1	259	42	46	12.0000
CUCA	chr2:216271098-216271330(-)$1	232	4	8	12.0000
CUCA	chr5:133474557-133474831(+)$1	274	59	63	12.0000
CUCA	chr7:103131075-103131315(-)$1	240	150	154	12.0000
CUCA	chr12:12483243-12483481(-)$1	238	51	55	12.0000
CUCA	chr2:21233745-21233956(-)$1	211	44	48	12.0000
CUCA	chr1:150442996-150443268(+)$1	272	98	102	12.0000
CUCA	chr1:52896811-52897067(-)$1	256	5	9	12.0000
CUCA	chr7:103180679-103180924(-)$1	245	104	108	12.0000
CUCA	chr5:92923775-92924002(+)$1	227	143	147	12.0000
CUCA	chr2:32715052-32715301(+)$1	249	72	76	12.0000
CUCA	chrM:6334-6576(+)$1	242	212	216	12.0000
CUCA	chr3:124731701-124731980(-)$1	279	106	110	12.0000
CUCA	chr4:187541763-187541993(-)$1	230	59	63	12.0000
CUCA	chr12:994936-995171(+)$1	235	34	38	12.0000
CUCA	chr1:32384498-32384805(-)$1	307	105	109	12.0000
CUCA	chr20:30153912-30154147(+)$1	235	93	97	12.0000
CUCA	chr2:216240291-216240515(-)$1	224	62	66	12.0000
CUCA	chr16:87446284-87446642(-)$1	358	229	233	12.0000
CUCA	chr17:36896443-36896755(-)$1	312	145	149	12.0000
CUCA	chr16:67470702-67471054(+)$1	352	21	25	12.0000
CUCA	chr1:11345860-11346146(+)$1	286	61	65	12.0000
CUCA	chr16:3071777-3072045(+)$1	268	82	86	12.0000
CUCA	chr20:33329126-33329380(-)$1	254	173	177	12.0000
CUCA	chr7:139257991-139258227(-)$1	236	85	89	12.0000
CUCA	chr6:71245954-71246213(+)$1	259	78	82	12.0000
CUCA	chr16:84103413-84103662(-)$1	249	200	204	12.0000
CUCA	chr19:34687439-34687731(+)$1	292	81	85	12.0000
CUCA	chr2:98373608-98373877(-)$1	269	154	158	12.0000
CUCA	chr12:9268279-9268501(-)$1	222	124	128	12.0000
CUCA	chr6:15496365-15496696(+)$1	331	215	219	12.0000
CUCA	chr13:45914105-45914322(-)$1	217	39	43	12.0000
CUCA	chr11:34117923-34118210(+)$1	287	168	172	12.0000
CUCA	chr13:115090332-115090616(+)$1	284	109	113	12.0000
CUCA	chr17:7483101-7483451(+)$1	350	50	54	12.0000
CUCA	chr1:154232336-154232604(+)$1	268	30	34	12.0000
CUCA	chr4:73957381-73957670(-)$1	289	15	19	12.0000

#otherMatches

#Struct PSSM
BB{F	chr19:6684502-6684705(-)$1	203	80	84	12.0000
CCKK	chr6:56323777-56324029(-)$1	252	85	89	12.0000
FFFF	chr15:90809432-90809656(+)$1	224	204	208	12.0000
::::	chr12:124821468-124821722(-)$1	254	11	15	12.0000
vvvv	chr12:111893797-111894103(-)$1	306	17	21	12.0000
::::	chr19:15353655-15353926(-)$1	271	153	157	12.0000
::::	chr12:46754768-46755018(-)$1	250	134	138	12.0000
:::B	chr2:21230753-21230980(-)$1	227	48	52	12.0000
8888	chr11:102272711-102272997(-)$1	286	136	140	12.0000
eeee	chr11:57466292-57466560(+)$1	268	35	39	12.0000
CCLL	chr3:99567153-99567393(-)$1	240	26	30	12.0000
bb!!	chr2:216236621-216236838(-)$1	217	78	82	12.0000
c:::	chr19:6719293-6719514(-)$1	221	52	56	12.0000
8888	chr17:15960772-15961056(-)$1	284	85	89	12.0000
:::F	chr9:74364986-74365243(-)$1	257	0	4	12.0000
::::	chr12:971301-971536(+)$1	235	100	104	12.0000
ffff	chr11:59421372-59421643(-)$1	271	100	104	12.0000
EE:f	chr11:32953262-32953515(+)$1	253	36	40	12.0000
:ccc	chr2:203420060-203420397(+)$1	337	185	189	12.0000
GGGG	chr2:61710980-61711276(-)$1	296	97	101	12.0000
BB{D	chrX:30872671-30872900(-)$1	229	11	15	12.0000
FFMM	chr20:33345087-33345385(-)$1	298	6	10	12.0000
::::	chr9:127622361-127622575(-)$1	214	63	67	12.0000
::::	chr20:17930741-17930952(-)$1	211	9	13	12.0000
ccch	chr5:42801110-42801338(-)$1	228	77	81	12.0000
:ddd	chr19:45805775-45806098(+)$1	323	293	297	12.0000
f&&&	chr7:103270350-103270561(-)$1	211	111	115	12.0000
eee4	chr19:6718157-6718359(-)$1	202	156	160	12.0000
}DDD	chr3:141161963-141162240(+)$1	277	176	180	12.0000
d###	chr12:121435418-121435673(+)$1	255	29	33	12.0000
{AGG	chr4:73957659-73957908(-)$1	249	100	104	12.0000
bbff	chr12:9247574-9247780(-)$1	206	126	130	12.0000
FFFF	chr4:152096284-152096534(-)$1	250	0	4	12.0000
dd::	chr3:32932939-32933199(+)$1	260	254	258	12.0000
dooo	chr2:216256380-216256605(-)$1	225	177	181	12.0000
====	chr3:49570246-49570513(+)$1	267	146	150	12.0000
dddd	chr16:18549745-18550011(-)$1	266	32	36	12.0000
HHHH	chr17:38421235-38421499(+)$1	264	257	261	12.0000
eeee	chr5:78076291-78076543(-)$1	252	28	32	12.0000
cc22	chrX:71492519-71492722(-)$1	203	145	149	12.0000
c]ac	chr9:110068564-110068821(+)$1	257	129	133	12.0000
cccn	chr2:21229881-21230100(-)$1	219	73	77	12.0000
bggg	chr7:77256634-77256940(+)$1	306	26	30	12.0000
bb!!	chr9:111640174-111640397(-)$1	223	132	136	12.0000
#iii	chr5:42801231-42801450(-)$1	219	20	24	12.0000
^^^d	chr3:52558499-52558779(-)$1	280	104	108	12.0000
wwww	chr12:9223068-9223274(-)$1	206	95	99	12.0000
wwww	chr6:24706278-24706557(-)$1	279	133	137	12.0000
::::	chr7:139299087-139299313(-)$1	226	24	28	12.0000
ee""	chr6:155126462-155126721(+)$1	259	42	46	12.0000
dsss	chr2:216271098-216271330(-)$1	232	4	8	12.0000
GGGG	chr5:133474557-133474831(+)$1	274	59	63	12.0000
::::	chr7:103131075-103131315(-)$1	240	150	154	12.0000
'''b	chr12:12483243-12483481(-)$1	238	51	55	12.0000
:::e	chr2:21233745-21233956(-)$1	211	44	48	12.0000
::::	chr1:150442996-150443268(+)$1	272	98	102	12.0000
FFKK	chr1:52896811-52897067(-)$1	256	5	9	12.0000
DDDD	chr7:103180679-103180924(-)$1	245	104	108	12.0000
wwgg	chr5:92923775-92924002(+)$1	227	143	147	12.0000
:::H	chr2:32715052-32715301(+)$1	249	72	76	12.0000
::::	chrM:6334-6576(+)$1	242	212	216	12.0000
pddd	chr3:124731701-124731980(-)$1	279	106	110	12.0000
mmdd	chr4:187541763-187541993(-)$1	230	59	63	12.0000
eeen	chr12:994936-995171(+)$1	235	34	38	12.0000
ccc[	chr1:32384498-32384805(-)$1	307	105	109	12.0000
ooee	chr20:30153912-30154147(+)$1	235	93	97	12.0000
bb::	chr2:216240291-216240515(-)$1	224	62	66	12.0000
ffff	chr16:87446284-87446642(-)$1	358	229	233	12.0000
ccc]	chr17:36896443-36896755(-)$1	312	145	149	12.0000
HHHH	chr16:67470702-67471054(+)$1	352	21	25	12.0000
EEEL	chr1:11345860-11346146(+)$1	286	61	65	12.0000
ccc:	chr16:3071777-3072045(+)$1	268	82	86	12.0000
ssss	chr20:33329126-33329380(-)$1	254	173	177	12.0000
dddd	chr7:139257991-139258227(-)$1	236	85	89	12.0000
DPPP	chr6:71245954-71246213(+)$1	259	78	82	12.0000
ccll	chr16:84103413-84103662(-)$1	249	200	204	12.0000
nnnc	chr19:34687439-34687731(+)$1	292	81	85	12.0000
c!!e	chr2:98373608-98373877(-)$1	269	154	158	12.0000
ccc[	chr12:9268279-9268501(-)$1	222	124	128	12.0000
xxcc	chr6:15496365-15496696(+)$1	331	215	219	12.0000
niii	chr13:45914105-45914322(-)$1	217	39	43	12.0000
"""d	chr11:34117923-34118210(+)$1	287	168	172	12.0000
qqqq	chr13:115090332-115090616(+)$1	284	109	113	12.0000
hhh:	chr17:7483101-7483451(+)$1	350	50	54	12.0000
gggg	chr1:154232336-154232604(+)$1	268	30	34	12.0000
eess	chr4:73957381-73957670(-)$1	289	15	19	12.0000

#DB
((.(	chr19:6684502-6684705(-)$1	1	80	84	12.0000
((..	chr6:56323777-56324029(-)$1	1	85	89	12.0000
))))	chr15:90809432-90809656(+)$1	1	204	208	12.0000
....	chr12:124821468-124821722(-)$1	1	11	15	12.0000
....	chr12:111893797-111894103(-)$1	1	17	21	12.0000
....	chr19:15353655-15353926(-)$1	1	153	157	12.0000
....	chr12:46754768-46755018(-)$1	1	134	138	12.0000
...(	chr2:21230753-21230980(-)$1	1	48	52	12.0000
....	chr11:102272711-102272997(-)$1	1	136	140	12.0000
((((	chr11:57466292-57466560(+)$1	1	35	39	12.0000
((..	chr3:99567153-99567393(-)$1	1	26	30	12.0000
((..	chr2:216236621-216236838(-)$1	1	78	82	12.0000
)...	chr19:6719293-6719514(-)$1	1	52	56	12.0000
....	chr17:15960772-15961056(-)$1	1	85	89	12.0000
...(	chr9:74364986-74365243(-)$1	1	0	4	12.0000
....	chr12:971301-971536(+)$1	1	100	104	12.0000
))))	chr11:59421372-59421643(-)$1	1	100	104	12.0000
((.(	chr11:32953262-32953515(+)$1	1	36	40	12.0000
.(((	chr2:203420060-203420397(+)$1	1	185	189	12.0000
((((	chr2:61710980-61711276(-)$1	1	97	101	12.0000
((.(	chrX:30872671-30872900(-)$1	1	11	15	12.0000
((..	chr20:33345087-33345385(-)$1	1	6	10	12.0000
....	chr9:127622361-127622575(-)$1	1	63	67	12.0000
....	chr20:17930741-17930952(-)$1	1	9	13	12.0000
((((	chr5:42801110-42801338(-)$1	1	77	81	12.0000
.(((	chr19:45805775-45806098(+)$1	1	293	297	12.0000
(...	chr7:103270350-103270561(-)$1	1	111	115	12.0000
))).	chr19:6718157-6718359(-)$1	1	156	160	12.0000
.)))	chr3:141161963-141162240(+)$1	1	176	180	12.0000
(...	chr12:121435418-121435673(+)$1	1	29	33	12.0000
.(((	chr4:73957659-73957908(-)$1	1	100	104	12.0000
))))	chr12:9247574-9247780(-)$1	1	126	130	12.0000
((((	chr4:152096284-152096534(-)$1	1	0	4	12.0000
))..	chr3:32932939-32933199(+)$1	1	254	258	12.0000
(...	chr2:216256380-216256605(-)$1	1	177	181	12.0000
((((	chr3:49570246-49570513(+)$1	1	146	150	12.0000
((((	chr16:18549745-18550011(-)$1	1	32	36	12.0000
))))	chr17:38421235-38421499(+)$1	1	257	261	12.0000
((((	chr5:78076291-78076543(-)$1	1	28	32	12.0000
))..	chrX:71492519-71492722(-)$1	1	145	149	12.0000
).)(	chr9:110068564-110068821(+)$1	1	129	133	12.0000
(((.	chr2:21229881-21230100(-)$1	1	73	77	12.0000
))))	chr7:77256634-77256940(+)$1	1	26	30	12.0000
((..	chr9:111640174-111640397(-)$1	1	132	136	12.0000
.(((	chr5:42801231-42801450(-)$1	1	20	24	12.0000
...)	chr3:52558499-52558779(-)$1	1	104	108	12.0000
....	chr12:9223068-9223274(-)$1	1	95	99	12.0000
....	chr6:24706278-24706557(-)$1	1	133	137	12.0000
....	chr7:139299087-139299313(-)$1	1	24	28	12.0000
((..	chr6:155126462-155126721(+)$1	1	42	46	12.0000
(...	chr2:216271098-216271330(-)$1	1	4	8	12.0000
((((	chr5:133474557-133474831(+)$1	1	59	63	12.0000
....	chr7:103131075-103131315(-)$1	1	150	154	12.0000
...(	chr12:12483243-12483481(-)$1	1	51	55	12.0000
...(	chr2:21233745-21233956(-)$1	1	44	48	12.0000
....	chr1:150442996-150443268(+)$1	1	98	102	12.0000
((..	chr1:52896811-52897067(-)$1	1	5	9	12.0000
((((	chr7:103180679-103180924(-)$1	1	104	108	12.0000
..))	chr5:92923775-92924002(+)$1	1	143	147	12.0000
...)	chr2:32715052-32715301(+)$1	1	72	76	12.0000
....	chrM:6334-6576(+)$1	1	212	216	12.0000
.)))	chr3:124731701-124731980(-)$1	1	106	110	12.0000
..))	chr4:187541763-187541993(-)$1	1	59	63	12.0000
(((.	chr12:994936-995171(+)$1	1	34	38	12.0000
(((.	chr1:32384498-32384805(-)$1	1	105	109	12.0000
..))	chr20:30153912-30154147(+)$1	1	93	97	12.0000
))..	chr2:216240291-216240515(-)$1	1	62	66	12.0000
))))	chr16:87446284-87446642(-)$1	1	229	233	12.0000
))).	chr17:36896443-36896755(-)$1	1	145	149	12.0000
((((	chr16:67470702-67471054(+)$1	1	21	25	12.0000
(((.	chr1:11345860-11346146(+)$1	1	61	65	12.0000
))).	chr16:3071777-3072045(+)$1	1	82	86	12.0000
....	chr20:33329126-33329380(-)$1	1	173	177	12.0000
))))	chr7:139257991-139258227(-)$1	1	85	89	12.0000
(...	chr6:71245954-71246213(+)$1	1	78	82	12.0000
((..	chr16:84103413-84103662(-)$1	1	200	204	12.0000
...)	chr19:34687439-34687731(+)$1	1	81	85	12.0000
(..(	chr2:98373608-98373877(-)$1	1	154	158	12.0000
(((.	chr12:9268279-9268501(-)$1	1	124	128	12.0000
..))	chr6:15496365-15496696(+)$1	1	215	219	12.0000
.)))	chr13:45914105-45914322(-)$1	1	39	43	12.0000
...(	chr11:34117923-34118210(+)$1	1	168	172	12.0000
....	chr13:115090332-115090616(+)$1	1	109	113	12.0000
))).	chr17:7483101-7483451(+)$1	1	50	54	12.0000
((((	chr1:154232336-154232604(+)$1	1	30	34	12.0000
((..	chr4:73957381-73957670(-)$1	1	15	19	12.0000

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	
A : 0.98	a : 0.01	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_transcript_m2_run2.nuc.txt

#NT
GGGAUGGG	chr1:27892193-27892498(-)$1	305	117	125	15.7808
GGGAUGGG	chr19:28918277-28918576(-)$1	299	272	280	15.7808
GGGAGCGG	chr16:448831-449076(+)$1	245	176	184	15.7123
GGGAGGGA	chr2:113993143-113993449(+)$1	306	24	32	16.4657
GGCAGGGG	chr8:131028061-131028340(-)$1	279	57	65	15.8493
GGGAAGGG	chr19:56627971-56628244(-)$1	273	18	26	15.9178
GGCAGGGG	chr9:140324636-140324900(+)$1	264	4	12	15.8493
GGGCGGGG	chr19:47759947-47760214(+)$1	267	1	9	15.8493
GGGAGGUG	chr19:42757230-42757503(-)$1	273	114	122	15.5068
GGGAGGGC	chr22:49981136-49981368(-)$1	232	190	198	16.3287
gggagggc	chr17:79281785-79282040(-)$1	255	45	53	16.3287
GGGAGGGG	chr11:660325-660606(-)$1	281	106	114	20.0273
GGGAGGGG	chr20:60936811-60937095(-)$1	284	17	25	20.0273
GGGAGGGA	chr12:133114659-133114902(+)$1	243	66	74	16.4657
GGAAGGGG	chr1:972421-972671(+)$1	250	41	49	15.7808
gggugggg	chr2:97560575-97560810(-)$1	235	206	214	15.5753
GGGAGGGU	chr3:38496107-38496392(+)$1	285	166	174	16.1232
GGCAGGGG	chr4:711531-711815(+)$1	284	87	95	15.8493
GGGAGUGG	chr4:763927-764210(-)$1	283	103	111	15.9863
GGGAAGGG	chr4:2798930-2799196(+)$1	266	23	31	15.9178
GGGAAGGG	chr16:964493-964805(-)$1	312	25	33	15.9178
GGGGGGGG	chr17:38476071-38476353(+)$1	282	4	12	15.5753
GGGAGGGG	chr15:48624003-48624278(+)$1	275	2	10	20.0273
CGGAGGGG	chr5:126113660-126113959(+)$1	299	84	92	15.3698
GGGAGGGC	chr1:2332471-2332720(+)$1	249	152	160	16.3287
GGGAGGGA	chr16:88523212-88523505(+)$1	293	128	136	16.4657
GGGAGGAG	chr1:26799204-26799455(+)$1	251	130	138	15.3698
GGGAGGUG	chr22:49925214-49925498(-)$1	284	106	114	15.5068
GGGAGGGG	chr16:88965317-88965571(-)$1	254	96	104	20.0273
GGGAGGGA	chr19:49605891-49606161(+)$1	270	110	118	16.4657
gggagggg	chr16:4660950-4661196(-)$1	246	2	10	20.0273
GGGAGAGG	chr19:41196098-41196361(-)$1	263	8	16	15.8493
GGGAGGGG	chr1:87794871-87795156(+)$1	285	102	110	20.0273
gggagggc	chr10:126848641-126848877(-)$1	236	6	14	16.3287
GGGAGUGG	chr5:655641-655948(+)$1	307	77	85	15.9863
GGGCGGGG	chr2:106361751-106362018(+)$1	267	102	110	15.8493
GGGAGGGA	chr20:61568812-61569097(-)$1	285	38	46	16.4657
GGGAGAGG	chr17:79221004-79221301(-)$1	297	188	196	15.8493
aggagggg	chr19:3374621-3374975(+)$1	354	20	28	15.3013
GGGAGGGG	chr16:2055072-2055341(-)$1	269	225	233	20.0273
gggcgggg	chr10:126847974-126848235(-)$1	261	209	217	15.8493
GGGAUGGG	chr14:76796410-76796696(+)$1	286	189	197	15.7808
GGGAGUGG	chrX:70800023-70800290(+)$1	267	65	73	15.9863
GGGAGGGG	chr1:245026627-245026897(-)$1	270	104	112	20.0273
gggagggg	chr17:7141462-7141704(-)$1	242	22	30	20.0273
GGCAGGGG	chr12:53854820-53855024(+)$1	204	1	9	15.8493
gggaaggg	chr13:108867601-108867863(-)$1	262	34	42	15.9178
GCGAGGGG	chr15:73924970-73925243(-)$1	273	54	62	15.4383
GGGAGGGG	chr12:30907674-30907936(-)$1	262	112	120	20.0273
gGGAGGGG	chr15:40343207-40343464(+)$1	257	16	24	20.0273
GGGAGGGG	chr11:431969-432276(-)$1	307	125	133	20.0273
CGGAGGGG	chr2:200323329-200323582(-)$1	253	28	36	15.3698
GGGAGGGA	chr7:1487450-1487694(-)$1	244	101	109	16.4657
GAGAGGGG	chr8:144815556-144815821(-)$1	265	80	88	15.5753
GGGCGGGG	chr13:28713397-28713642(+)$1	245	87	95	15.8493
GGGAGAGG	chr7:2241270-2241538(-)$1	268	119	127	15.8493
GGGAAGGG	chr20:60627982-60628219(-)$1	237	120	128	15.9178
GGAAGGGG	chr9:126028346-126028605(-)$1	259	21	29	15.7808
GGGAGUGG	chr22:49926067-49926307(-)$1	240	20	28	15.9863
GGGAGGGG	chr15:80215039-80215351(-)$1	312	247	255	20.0273
GGGAGGGU	chr19:4122034-4122275(-)$1	241	52	60	16.1232
GGGAGGUG	chr16:88999512-88999769(-)$1	257	173	181	15.5068
GAGAGGGG	chr19:926596-926865(+)$1	269	45	53	15.5753
GAGAGGGG	chr22:50032751-50032997(-)$1	246	5	13	15.5753
gugagggg	chr7:76626639-76626916(+)$1	277	223	231	15.4383
GGGAGGGG	chrX:133930861-133931138(-)$1	277	105	113	20.0273
GGUAGGGG	chr1:1279641-1279931(-)$1	290	10	18	15.6438
GGGAGGGG	chr1:151031553-151031819(-)$1	266	230	238	20.0273
GGGCGGGG	chr19:53598033-53598392(-)$1	359	66	74	15.8493
GGGAGGGA	chr6:53212662-53212953(-)$1	291	4	12	16.4657
GGGAGGGC	chr7:127670080-127670351(+)$1	271	96	104	16.3287
GGAAGGGG	chr15:66878652-66878922(+)$1	270	132	140	15.7808

#otherMatches

#Struct PSSM
========	chr21:45562779-45563004(+)$1	225	94	102	15.9863
effffffl	chr1:27892193-27892498(-)$1	305	117	125	15.7808
ixxxxxxx	chr19:28918277-28918576(-)$1	299	272	280	15.7808
fffff]bb	chr16:448831-449076(+)$1	245	176	184	15.7123
ppppbb]c	chr2:113993143-113993449(+)$1	306	24	32	16.4657
qccc]ggg	chr8:131028061-131028340(-)$1	279	57	65	15.8493
ccc%%%%%	chr19:56627971-56628244(-)$1	273	18	26	15.9178
FFF:EEEE	chr9:140324636-140324900(+)$1	264	4	12	15.8493
:::CCC{C	chr19:47759947-47760214(+)$1	267	1	9	15.8493
FFFFFF{E	chr19:42757230-42757503(-)$1	273	114	122	15.5068
mmmbb22f	chr22:49981136-49981368(-)$1	232	190	198	16.3287
[ccc!!dd	chr17:79281785-79282040(-)$1	255	45	53	16.3287
GGGGLLLB	chr11:660325-660606(-)$1	281	106	114	20.0273
MMMMGGGG	chr20:60936811-60937095(-)$1	284	17	25	20.0273
HH{BB:ff	chr12:133114659-133114902(+)$1	243	66	74	16.4657
bb[ddddp	chr1:972421-972671(+)$1	250	41	49	15.7808
DDDDYYCC	chr2:97560575-97560810(-)$1	235	206	214	15.5753
eeeegggg	chr3:38496107-38496392(+)$1	285	166	174	16.1232
IIIILLLC	chr4:711531-711815(+)$1	284	87	95	15.8493
EEEE{DDD	chr4:763927-764210(-)$1	283	103	111	15.9863
MMMMJJJJ	chr4:2798930-2799196(+)$1	266	23	31	15.9178
ff&&&&&&	chr16:964493-964805(-)$1	312	25	33	15.9178
oooooocc	chr17:38476071-38476353(+)$1	282	4	12	15.5753
Cddddlll	chr15:48624003-48624278(+)$1	275	2	10	20.0273
ammmma]e	chr5:126113660-126113959(+)$1	299	84	92	15.3698
========	chr1:2332471-2332720(+)$1	249	152	160	16.3287
ddd[gggg	chr16:88523212-88523505(+)$1	293	128	136	16.4657
EEffffff	chr1:26799204-26799455(+)$1	251	130	138	15.3698
GGG{DDDD	chr22:49925214-49925498(-)$1	284	106	114	15.5068
FFKKEEEE	chr16:88965317-88965571(-)$1	254	96	104	20.0273
IIIIIIII	chr19:49605891-49606161(+)$1	270	110	118	16.4657
bb!!eeee	chr16:4660950-4661196(-)$1	246	2	10	20.0273
::::::FF	chr19:41196098-41196361(-)$1	263	8	16	15.8493
[bb[eeee	chr1:87794871-87795156(+)$1	285	102	110	20.0273
FFF{DDDD	chr10:126848641-126848877(-)$1	236	6	14	16.3287
JJJJJJJJ	chr5:655641-655948(+)$1	307	77	85	15.9863
bddddmmm	chr2:106361751-106362018(+)$1	267	102	110	15.8493
gggggggm	chr20:61568812-61569097(-)$1	285	38	46	16.4657
iiiiiiii	chr17:79221004-79221301(-)$1	297	188	196	15.8493
RBB{DDDD	chr19:3374621-3374975(+)$1	354	20	28	15.3013
99999999	chr16:2055072-2055341(-)$1	269	225	233	20.0273
ff]dddd3	chr10:126847974-126848235(-)$1	261	209	217	15.8493
hhhhh!!e	chr14:76796410-76796696(+)$1	286	189	197	15.7808
::::::::	chrX:70800023-70800290(+)$1	267	65	73	15.9863
]a666666	chr1:245026627-245026897(-)$1	270	104	112	20.0273
{BB{BBAC	chr17:7141462-7141704(-)$1	242	22	30	20.0273
:::DDDDM	chr12:53854820-53855024(+)$1	204	1	9	15.8493
''''''''	chr13:108867601-108867863(-)$1	262	34	42	15.9178
ggggg444	chr15:73924970-73925243(-)$1	273	54	62	15.4383
c:::dddd	chr12:30907674-30907936(-)$1	262	112	120	20.0273
DDDD{CCC	chr15:40343207-40343464(+)$1	257	16	24	20.0273
bb]dddd]	chr11:431969-432276(-)$1	307	125	133	20.0273
GG{FFFFF	chr2:200323329-200323582(-)$1	253	28	36	15.3698
ddd[dddd	chr7:1487450-1487694(-)$1	244	101	109	16.4657
!!annnnn	chr8:144815556-144815821(-)$1	265	80	88	15.5753
eeeee&&&	chr13:28713397-28713642(+)$1	245	87	95	15.8493
IIIIIIII	chr7:2241270-2241538(-)$1	268	119	127	15.8493
FFFF::::	chr20:60627982-60628219(-)$1	237	120	128	15.9178
vvvvccc4	chr9:126028346-126028605(-)$1	259	21	29	15.7808
oooeeeee	chr22:49926067-49926307(-)$1	240	20	28	15.9863
h[bb!!ff	chr15:80215039-80215351(-)$1	312	247	255	20.0273
oa55555=	chr19:4122034-4122275(-)$1	241	52	60	16.1232
ddd22ddd	chr16:88999512-88999769(-)$1	257	173	181	15.5068
::::ffff	chr19:926596-926865(+)$1	269	45	53	15.5753
##gggggg	chr22:50032751-50032997(-)$1	246	5	13	15.5753
]a]a]a44	chr7:76626639-76626916(+)$1	277	223	231	15.4383
fff22eee	chrX:133930861-133931138(-)$1	277	105	113	20.0273
FFFFFFHH	chr1:1279641-1279931(-)$1	290	10	18	15.6438
:ffffff[	chr1:151031553-151031819(-)$1	266	230	238	20.0273
EE{DDDDh	chr19:53598033-53598392(-)$1	359	66	74	15.8493
MMMFFFFF	chr6:53212662-53212953(-)$1	291	4	12	16.4657
HHHHHCCC	chr7:127670080-127670351(+)$1	271	96	104	16.3287
::EEEEE{	chr15:66878652-66878922(+)$1	270	132	140	15.7808

#DB
((((((((	chr21:45562779-45563004(+)$1	1	94	102	15.9863
(((((((.	chr1:27892193-27892498(-)$1	1	117	125	15.7808
(.......	chr19:28918277-28918576(-)$1	1	272	280	15.7808
))))).))	chr16:448831-449076(+)$1	1	176	184	15.7123
....)).)	chr2:113993143-113993449(+)$1	1	24	32	16.4657
.))).)))	chr8:131028061-131028340(-)$1	1	57	65	15.8493
(((.....	chr19:56627971-56628244(-)$1	1	18	26	15.9178
(((.((((	chr9:140324636-140324900(+)$1	1	4	12	15.8493
...(((.(	chr19:47759947-47760214(+)$1	1	1	9	15.8493
((((((.(	chr19:42757230-42757503(-)$1	1	114	122	15.5068
...))..)	chr22:49981136-49981368(-)$1	1	190	198	16.3287
.(((..((	chr17:79281785-79282040(-)$1	1	45	53	16.3287
((((...(	chr11:660325-660606(-)$1	1	106	114	20.0273
....((((	chr20:60936811-60937095(-)$1	1	17	25	20.0273
((.((.((	chr12:133114659-133114902(+)$1	1	66	74	16.4657
((.((((.	chr1:972421-972671(+)$1	1	41	49	15.7808
))))..))	chr2:97560575-97560810(-)$1	1	206	214	15.5753
((((((((	chr3:38496107-38496392(+)$1	1	166	174	16.1232
((((...(	chr4:711531-711815(+)$1	1	87	95	15.8493
((((.(((	chr4:763927-764210(-)$1	1	103	111	15.9863
....((((	chr4:2798930-2799196(+)$1	1	23	31	15.9178
((......	chr16:964493-964805(-)$1	1	25	33	15.9178
......))	chr17:38476071-38476353(+)$1	1	4	12	15.5753
(((((...	chr15:48624003-48624278(+)$1	1	2	10	20.0273
(....).)	chr5:126113660-126113959(+)$1	1	84	92	15.3698
((((((((	chr1:2332471-2332720(+)$1	1	152	160	16.3287
(((.((((	chr16:88523212-88523505(+)$1	1	128	136	16.4657
((((((((	chr1:26799204-26799455(+)$1	1	130	138	15.3698
(((.((((	chr22:49925214-49925498(-)$1	1	106	114	15.5068
((..((((	chr16:88965317-88965571(-)$1	1	96	104	20.0273
((((((((	chr19:49605891-49606161(+)$1	1	110	118	16.4657
((..((((	chr16:4660950-4661196(-)$1	1	2	10	20.0273
......((	chr19:41196098-41196361(-)$1	1	8	16	15.8493
.((.((((	chr1:87794871-87795156(+)$1	1	102	110	20.0273
(((.((((	chr10:126848641-126848877(-)$1	1	6	14	16.3287
((((((((	chr5:655641-655948(+)$1	1	77	85	15.9863
(((((...	chr2:106361751-106362018(+)$1	1	102	110	15.8493
(((((((.	chr20:61568812-61569097(-)$1	1	38	46	16.4657
((((((((	chr17:79221004-79221301(-)$1	1	188	196	15.8493
.((.((((	chr19:3374621-3374975(+)$1	1	20	28	15.3013
........	chr16:2055072-2055341(-)$1	1	225	233	20.0273
)).)))).	chr10:126847974-126848235(-)$1	1	209	217	15.8493
(((((..(	chr14:76796410-76796696(+)$1	1	189	197	15.7808
........	chrX:70800023-70800290(+)$1	1	65	73	15.9863
.)......	chr1:245026627-245026897(-)$1	1	104	112	20.0273
.((.((((	chr17:7141462-7141704(-)$1	1	22	30	20.0273
...((((.	chr12:53854820-53855024(+)$1	1	1	9	15.8493
........	chr13:108867601-108867863(-)$1	1	34	42	15.9178
)))))...	chr15:73924970-73925243(-)$1	1	54	62	15.4383
)...((((	chr12:30907674-30907936(-)$1	1	112	120	20.0273
((((.(((	chr15:40343207-40343464(+)$1	1	16	24	20.0273
)).)))).	chr11:431969-432276(-)$1	1	125	133	20.0273
((.(((((	chr2:200323329-200323582(-)$1	1	28	36	15.3698
(((.((((	chr7:1487450-1487694(-)$1	1	101	109	16.4657
..(.....	chr8:144815556-144815821(-)$1	1	80	88	15.5753
(((((...	chr13:28713397-28713642(+)$1	1	87	95	15.8493
((((((((	chr7:2241270-2241538(-)$1	1	119	127	15.8493
))))....	chr20:60627982-60628219(-)$1	1	120	128	15.9178
....))).	chr9:126028346-126028605(-)$1	1	21	29	15.7808
...)))))	chr22:49926067-49926307(-)$1	1	20	28	15.9863
(.((..((	chr15:80215039-80215351(-)$1	1	247	255	20.0273
.).....)	chr19:4122034-4122275(-)$1	1	52	60	16.1232
)))..)))	chr16:88999512-88999769(-)$1	1	173	181	15.5068
....((((	chr19:926596-926865(+)$1	1	45	53	15.5753
..((((((	chr22:50032751-50032997(-)$1	1	5	13	15.5753
.).).)..	chr7:76626639-76626916(+)$1	1	223	231	15.4383
)))..)))	chrX:133930861-133931138(-)$1	1	105	113	20.0273
((((((((	chr1:1279641-1279931(-)$1	1	10	18	15.6438
.((((((.	chr1:151031553-151031819(-)$1	1	230	238	20.0273
((.(((((	chr19:53598033-53598392(-)$1	1	66	74	15.8493
...(((((	chr6:53212662-53212953(-)$1	1	4	12	16.4657
)))))(((	chr7:127670080-127670351(+)$1	1	96	104	16.3287
..(((((.	chr15:66878652-66878922(+)$1	1	132	140	15.7808

#PSSM
G : 0.83	g : 0.12	C : 0.02	a : 0.01	
G : 0.82	g : 0.10	A : 0.04	C : 0.01	u : 0.01	
G : 0.76	g : 0.12	C : 0.05	A : 0.04	U : 0.01	
A : 0.80	a : 0.09	C : 0.05	u : 0.01	G : 0.01	c : 0.01	
G : 0.78	g : 0.10	A : 0.05	U : 0.04	a : 0.01	
G : 0.75	g : 0.12	U : 0.06	A : 0.04	C : 0.01	
G : 0.82	g : 0.12	U : 0.04	A : 0.01	
G : 0.71	A : 0.09	g : 0.09	C : 0.04	c : 0.02	U : 0.02	

#score	1222.000000000002
#seq	73
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_transcript_m3_run2.nuc.txt

#NT
GAG	chr2:3475532-3475787(+)$1	255	20	23	9.0000
GAG	chr7:99631265-99631513(+)$1	248	23	26	9.0000
GAG	chr16:74350135-74350451(-)$1	316	31	34	9.0000
gag	chr12:133500991-133501270(-)$1	279	5	8	9.0000
GAG	chr6:2342170-2342486(+)$1	316	16	19	9.0000
GAG	chr15:32929841-32930103(+)$1	262	105	108	9.0000
GAG	chr16:18861541-18861831(-)$1	290	69	72	9.0000
gag	chr14:61356844-61357117(+)$1	273	93	96	9.0000
GAG	chr9:117073584-117073833(+)$1	249	220	223	9.0000
gag	chr3:37991029-37991278(+)$1	249	61	64	9.0000
GAG	chr15:65982928-65983193(-)$1	265	38	41	9.0000
GAG	chr21:40571230-40571571(-)$1	341	29	32	9.0000
GAG	chr19:21475865-21476119(-)$1	254	4	7	9.0000
gag	chr20:8154436-8154689(+)$1	253	91	94	9.0000
GAG	chr7:157654020-157654269(-)$1	249	16	19	9.0000
gag	chr2:63107910-63108151(+)$1	241	68	71	9.0000
GAG	chr1:91404093-91404327(-)$1	234	9	12	9.0000
gag	chr8:53567023-53567372(-)$1	349	68	71	9.0000
GAG	chr2:101494905-101495156(+)$1	251	15	18	9.0000
GAG	chr20:33000316-33000544(+)$1	228	19	22	9.0000
gag	chr2:138749721-138750024(+)$1	303	52	55	9.0000
GAG	chr16:2814212-2814485(+)$1	273	25	28	9.0000
GAG	chr17:20787400-20787643(+)$1	243	23	26	9.0000
GAG	chrX:70793369-70793639(+)$1	270	51	54	9.0000
gag	chr17:75339554-75339843(+)$1	289	61	64	9.0000
GAG	chr16:20728914-20729159(+)$1	245	202	205	9.0000
gag	chr9:94019896-94020154(-)$1	258	125	128	9.0000
gag	chr5:145867809-145868095(+)$1	286	64	67	9.0000
GAG	chr4:13601941-13602199(-)$1	258	1	4	9.0000
GAG	chr10:19856490-19856732(+)$1	242	84	87	9.0000
gag	chr6:168283745-168284000(+)$1	255	11	14	9.0000
GAG	chr17:37627244-37627510(+)$1	266	27	30	9.0000
GAG	chr14:89758188-89758467(-)$1	279	2	5	9.0000
GAG	chr6:144757152-144757373(+)$1	221	17	20	9.0000
GAG	chr20:45256930-45257189(-)$1	259	106	109	9.0000
GAG	chr17:65889385-65889606(+)$1	221	122	125	9.0000
GAG	chr8:128203947-128204199(-)$1	252	38	41	9.0000
gag	chr17:53368480-53368768(+)$1	288	97	100	9.0000
gag	chr1:246421063-246421313(-)$1	250	60	63	9.0000
gag	chr13:46573272-46573520(-)$1	248	1	4	9.0000
GAG	chr21:34610886-34611143(+)$1	257	147	150	9.0000
gag	chr10:46953161-46953421(+)$1	260	11	14	9.0000
GAG	chr7:158199569-158199844(-)$1	275	113	116	9.0000
gag	chr17:53368925-53369155(+)$1	230	26	29	9.0000
gag	chr6:3302970-3303235(-)$1	265	4	7	9.0000
GAg	chr6:2299230-2299590(+)$1	360	254	257	9.0000
gag	chr20:18282284-18282605(+)$1	321	104	107	9.0000
GAG	chr3:196692772-196693029(-)$1	257	7	10	9.0000
gag	chr16:15176396-15176642(-)$1	246	144	147	9.0000
GAG	chr5:70798329-70798601(+)$1	272	39	42	9.0000
gag	chr11:2670710-2670988(-)$1	278	25	28	9.0000
GAG	chr2:71650119-71650382(+)$1	263	20	23	9.0000
gag	chr2:167122897-167123173(-)$1	276	245	248	9.0000
gag	chr6:2272925-2273164(+)$1	239	2	5	9.0000
gag	chrX:73297791-73298038(-)$1	247	79	82	9.0000
GAG	chr2:167142762-167143028(-)$1	266	52	55	9.0000
GAG	chr4:40133326-40133638(+)$1	312	142	145	9.0000
gag	chr8:13032568-13032800(-)$1	232	94	97	9.0000
GAG	chr1:146674792-146675054(-)$1	262	111	114	9.0000
gag	chr10:61002158-61002410(+)$1	252	28	31	9.0000
GAG	chr22:49120499-49120733(+)$1	234	98	101	9.0000
gag	chr11:10190902-10191172(-)$1	270	87	90	9.0000
gag	chr20:1136928-1137190(+)$1	262	21	24	9.0000
gag	chr2:238995719-238995975(+)$1	256	6	9	9.0000
GAG	chr6:56380262-56380534(-)$1	272	2	5	9.0000
gag	chr12:11308353-11308603(-)$1	250	12	15	9.0000
GAG	chr3:50005782-50006060(+)$1	278	11	14	9.0000
GAG	chr11:71604159-71604415(-)$1	256	121	124	9.0000
GAG	chr19:58379486-58379756(+)$1	270	71	74	9.0000
GAG	chr15:25605431-25605661(-)$1	230	51	54	9.0000
GAG	chr3:195420904-195421192(+)$1	288	33	36	9.0000
GAG	chr14:39716485-39716737(+)$1	252	48	51	9.0000
GAG	chr7:99634870-99635097(+)$1	227	28	31	9.0000
GAG	chr4:140299846-140300107(+)$1	261	13	16	9.0000
GAG	chr13:45150555-45150887(-)$1	332	61	64	9.0000
gag	chr16:72992397-72992650(-)$1	253	4	7	9.0000
GAG	chr3:37365741-37366008(+)$1	267	56	59	9.0000
gag	chr16:20465530-20465799(+)$1	269	97	100	9.0000
GAG	chr16:24802135-24802417(+)$1	282	49	52	9.0000
gag	chr20:8155289-8155584(+)$1	295	15	18	9.0000
gag	chr17:78839445-78839739(+)$1	294	31	34	9.0000
GAG	chr16:90233484-90233713(+)$1	229	59	62	9.0000
GAG	chr3:60070716-60071012(-)$1	296	103	106	9.0000
GAG	chr19:12638424-12638684(-)$1	260	4	7	9.0000
gag	chr9:100777597-100777861(+)$1	264	47	50	9.0000
gag	chr11:108137800-108138084(+)$1	284	4	7	9.0000
gag	chr2:188378700-188378922(+)$1	222	23	26	9.0000
GAG	chr12:12352924-12353189(-)$1	265	42	45	9.0000
gag	chr7:32744234-32744625(-)$1	391	202	205	9.0000
GAG	chr8:100147723-100147996(+)$1	273	132	135	9.0000
gag	chrX:132989174-132989411(-)$1	237	1	4	9.0000
GAG	chr21:34143622-34143929(-)$1	307	1	4	9.0000
gag	chr15:102025199-102025444(-)$1	245	69	72	9.0000
GAG	chr17:41286769-41287040(+)$1	271	140	143	9.0000
GAG	chr10:13541759-13542064(-)$1	305	24	27	9.0000
gag	chr8:38404014-38404313(-)$1	299	1	4	9.0000

#otherMatches

#Struct PSSM
HHH	chr12:104341411-104341625(+)$1	214	59	62	9.0000
NNN	chr2:3475532-3475787(+)$1	255	20	23	9.0000
mme	chr7:99631265-99631513(+)$1	248	23	26	9.0000
DDD	chr16:74350135-74350451(-)$1	316	31	34	9.0000
F{D	chr12:133500991-133501270(-)$1	279	5	8	9.0000
GGG	chr6:2342170-2342486(+)$1	316	16	19	9.0000
ggg	chr15:32929841-32930103(+)$1	262	105	108	9.0000
HHH	chr16:18861541-18861831(-)$1	290	69	72	9.0000
ggh	chr14:61356844-61357117(+)$1	273	93	96	9.0000
ggg	chr9:117073584-117073833(+)$1	249	220	223	9.0000
DDD	chr3:37991029-37991278(+)$1	249	61	64	9.0000
22e	chr15:65982928-65983193(-)$1	265	38	41	9.0000
:ff	chr21:40571230-40571571(-)$1	341	29	32	9.0000
EEQ	chr19:21475865-21476119(-)$1	254	4	7	9.0000
FFF	chr20:8154436-8154689(+)$1	253	91	94	9.0000
DDD	chr7:157654020-157654269(-)$1	249	16	19	9.0000
e[b	chr2:63107910-63108151(+)$1	241	68	71	9.0000
III	chr1:91404093-91404327(-)$1	234	9	12	9.0000
ggg	chr8:53567023-53567372(-)$1	349	68	71	9.0000
ddd	chr2:101494905-101495156(+)$1	251	15	18	9.0000
FFF	chr20:33000316-33000544(+)$1	228	19	22	9.0000
FFF	chr2:138749721-138750024(+)$1	303	52	55	9.0000
III	chr16:2814212-2814485(+)$1	273	25	28	9.0000
ddd	chr17:20787400-20787643(+)$1	243	23	26	9.0000
BBK	chrX:70793369-70793639(+)$1	270	51	54	9.0000
ddw	chr17:75339554-75339843(+)$1	289	61	64	9.0000
ggg	chr16:20728914-20729159(+)$1	245	202	205	9.0000
eee	chr9:94019896-94020154(-)$1	258	125	128	9.0000
ee7	chr5:145867809-145868095(+)$1	286	64	67	9.0000
:::	chr4:13601941-13602199(-)$1	258	1	4	9.0000
ddd	chr10:19856490-19856732(+)$1	242	84	87	9.0000
ggq	chr6:168283745-168284000(+)$1	255	11	14	9.0000
FFF	chr17:37627244-37627510(+)$1	266	27	30	9.0000
C::	chr14:89758188-89758467(-)$1	279	2	5	9.0000
MDD	chr6:144757152-144757373(+)$1	221	17	20	9.0000
ddd	chr20:45256930-45257189(-)$1	259	106	109	9.0000
ddd	chr17:65889385-65889606(+)$1	221	122	125	9.0000
ood	chr8:128203947-128204199(-)$1	252	38	41	9.0000
ood	chr17:53368480-53368768(+)$1	288	97	100	9.0000
DDL	chr1:246421063-246421313(-)$1	250	60	63	9.0000
CCC	chr13:46573272-46573520(-)$1	248	1	4	9.0000
CCC	chr21:34610886-34611143(+)$1	257	147	150	9.0000
::f	chr10:46953161-46953421(+)$1	260	11	14	9.0000
[a[	chr7:158199569-158199844(-)$1	275	113	116	9.0000
ddc	chr17:53368925-53369155(+)$1	230	26	29	9.0000
EEG	chr6:3302970-3303235(-)$1	265	4	7	9.0000
ccc	chr6:2299230-2299590(+)$1	360	254	257	9.0000
DDD	chr20:18282284-18282605(+)$1	321	104	107	9.0000
FFF	chr3:196692772-196693029(-)$1	257	7	10	9.0000
ddd	chr16:15176396-15176642(-)$1	246	144	147	9.0000
fff	chr5:70798329-70798601(+)$1	272	39	42	9.0000
^^^	chr11:2670710-2670988(-)$1	278	25	28	9.0000
F::	chr2:71650119-71650382(+)$1	263	20	23	9.0000
@@@	chr2:167122897-167123173(-)$1	276	245	248	9.0000
{BB	chr6:2272925-2273164(+)$1	239	2	5	9.0000
ndd	chrX:73297791-73298038(-)$1	247	79	82	9.0000
fff	chr2:167142762-167143028(-)$1	266	52	55	9.0000
fff	chr4:40133326-40133638(+)$1	312	142	145	9.0000
:::	chr8:13032568-13032800(-)$1	232	94	97	9.0000
EEE	chr1:146674792-146675054(-)$1	262	111	114	9.0000
eee	chr10:61002158-61002410(+)$1	252	28	31	9.0000
mmm	chr22:49120499-49120733(+)$1	234	98	101	9.0000
666	chr11:10190902-10191172(-)$1	270	87	90	9.0000
MMM	chr20:1136928-1137190(+)$1	262	21	24	9.0000
GGd	chr2:238995719-238995975(+)$1	256	6	9	9.0000
::B	chr6:56380262-56380534(-)$1	272	2	5	9.0000
:EE	chr12:11308353-11308603(-)$1	250	12	15	9.0000
ccq	chr3:50005782-50006060(+)$1	278	11	14	9.0000
f[a	chr11:71604159-71604415(-)$1	256	121	124	9.0000
eee	chr19:58379486-58379756(+)$1	270	71	74	9.0000
D{G	chr15:25605431-25605661(-)$1	230	51	54	9.0000
LLB	chr3:195420904-195421192(+)$1	288	33	36	9.0000
ddd	chr14:39716485-39716737(+)$1	252	48	51	9.0000
bb"	chr7:99634870-99635097(+)$1	227	28	31	9.0000
ccd	chr4:140299846-140300107(+)$1	261	13	16	9.0000
!!b	chr13:45150555-45150887(-)$1	332	61	64	9.0000
E:D	chr16:72992397-72992650(-)$1	253	4	7	9.0000
d[b	chr3:37365741-37366008(+)$1	267	56	59	9.0000
ddd	chr16:20465530-20465799(+)$1	269	97	100	9.0000
"dd	chr16:24802135-24802417(+)$1	282	49	52	9.0000
ggg	chr20:8155289-8155584(+)$1	295	15	18	9.0000
qqq	chr17:78839445-78839739(+)$1	294	31	34	9.0000
eee	chr16:90233484-90233713(+)$1	229	59	62	9.0000
ddd	chr3:60070716-60071012(-)$1	296	103	106	9.0000
d[c	chr19:12638424-12638684(-)$1	260	4	7	9.0000
ggg	chr9:100777597-100777861(+)$1	264	47	50	9.0000
ddd	chr11:108137800-108138084(+)$1	284	4	7	9.0000
ccm	chr2:188378700-188378922(+)$1	222	23	26	9.0000
{JJ	chr12:12352924-12353189(-)$1	265	42	45	9.0000
eee	chr7:32744234-32744625(-)$1	391	202	205	9.0000
GGG	chr8:100147723-100147996(+)$1	273	132	135	9.0000
:::	chrX:132989174-132989411(-)$1	237	1	4	9.0000
:::	chr21:34143622-34143929(-)$1	307	1	4	9.0000
DDD	chr15:102025199-102025444(-)$1	245	69	72	9.0000
b[b	chr17:41286769-41287040(+)$1	271	140	143	9.0000
ooo	chr10:13541759-13542064(-)$1	305	24	27	9.0000
:::	chr8:38404014-38404313(-)$1	299	1	4	9.0000

#DB
(((	chr12:104341411-104341625(+)$1	1	59	62	9.0000
...	chr2:3475532-3475787(+)$1	1	20	23	9.0000
..)	chr7:99631265-99631513(+)$1	1	23	26	9.0000
(((	chr16:74350135-74350451(-)$1	1	31	34	9.0000
(.(	chr12:133500991-133501270(-)$1	1	5	8	9.0000
(((	chr6:2342170-2342486(+)$1	1	16	19	9.0000
)))	chr15:32929841-32930103(+)$1	1	105	108	9.0000
(((	chr16:18861541-18861831(-)$1	1	69	72	9.0000
(((	chr14:61356844-61357117(+)$1	1	93	96	9.0000
)))	chr9:117073584-117073833(+)$1	1	220	223	9.0000
(((	chr3:37991029-37991278(+)$1	1	61	64	9.0000
..)	chr15:65982928-65983193(-)$1	1	38	41	9.0000
.((	chr21:40571230-40571571(-)$1	1	29	32	9.0000
((.	chr19:21475865-21476119(-)$1	1	4	7	9.0000
(((	chr20:8154436-8154689(+)$1	1	91	94	9.0000
(((	chr7:157654020-157654269(-)$1	1	16	19	9.0000
(.(	chr2:63107910-63108151(+)$1	1	68	71	9.0000
(((	chr1:91404093-91404327(-)$1	1	9	12	9.0000
(((	chr8:53567023-53567372(-)$1	1	68	71	9.0000
(((	chr2:101494905-101495156(+)$1	1	15	18	9.0000
(((	chr20:33000316-33000544(+)$1	1	19	22	9.0000
(((	chr2:138749721-138750024(+)$1	1	52	55	9.0000
(((	chr16:2814212-2814485(+)$1	1	25	28	9.0000
(((	chr17:20787400-20787643(+)$1	1	23	26	9.0000
((.	chrX:70793369-70793639(+)$1	1	51	54	9.0000
((.	chr17:75339554-75339843(+)$1	1	61	64	9.0000
)))	chr16:20728914-20729159(+)$1	1	202	205	9.0000
)))	chr9:94019896-94020154(-)$1	1	125	128	9.0000
)).	chr5:145867809-145868095(+)$1	1	64	67	9.0000
...	chr4:13601941-13602199(-)$1	1	1	4	9.0000
(((	chr10:19856490-19856732(+)$1	1	84	87	9.0000
((.	chr6:168283745-168284000(+)$1	1	11	14	9.0000
(((	chr17:37627244-37627510(+)$1	1	27	30	9.0000
(..	chr14:89758188-89758467(-)$1	1	2	5	9.0000
.((	chr6:144757152-144757373(+)$1	1	17	20	9.0000
(((	chr20:45256930-45257189(-)$1	1	106	109	9.0000
)))	chr17:65889385-65889606(+)$1	1	122	125	9.0000
..)	chr8:128203947-128204199(-)$1	1	38	41	9.0000
..)	chr17:53368480-53368768(+)$1	1	97	100	9.0000
((.	chr1:246421063-246421313(-)$1	1	60	63	9.0000
(((	chr13:46573272-46573520(-)$1	1	1	4	9.0000
(((	chr21:34610886-34611143(+)$1	1	147	150	9.0000
..(	chr10:46953161-46953421(+)$1	1	11	14	9.0000
.(.	chr7:158199569-158199844(-)$1	1	113	116	9.0000
)))	chr17:53368925-53369155(+)$1	1	26	29	9.0000
(((	chr6:3302970-3303235(-)$1	1	4	7	9.0000
)))	chr6:2299230-2299590(+)$1	1	254	257	9.0000
(((	chr20:18282284-18282605(+)$1	1	104	107	9.0000
(((	chr3:196692772-196693029(-)$1	1	7	10	9.0000
(((	chr16:15176396-15176642(-)$1	1	144	147	9.0000
(((	chr5:70798329-70798601(+)$1	1	39	42	9.0000
...	chr11:2670710-2670988(-)$1	1	25	28	9.0000
(..	chr2:71650119-71650382(+)$1	1	20	23	9.0000
...	chr2:167122897-167123173(-)$1	1	245	248	9.0000
.((	chr6:2272925-2273164(+)$1	1	2	5	9.0000
.))	chrX:73297791-73298038(-)$1	1	79	82	9.0000
)))	chr2:167142762-167143028(-)$1	1	52	55	9.0000
(((	chr4:40133326-40133638(+)$1	1	142	145	9.0000
...	chr8:13032568-13032800(-)$1	1	94	97	9.0000
(((	chr1:146674792-146675054(-)$1	1	111	114	9.0000
)))	chr10:61002158-61002410(+)$1	1	28	31	9.0000
...	chr22:49120499-49120733(+)$1	1	98	101	9.0000
...	chr11:10190902-10191172(-)$1	1	87	90	9.0000
...	chr20:1136928-1137190(+)$1	1	21	24	9.0000
(((	chr2:238995719-238995975(+)$1	1	6	9	9.0000
..(	chr6:56380262-56380534(-)$1	1	2	5	9.0000
.((	chr12:11308353-11308603(-)$1	1	12	15	9.0000
((.	chr3:50005782-50006060(+)$1	1	11	14	9.0000
(.(	chr11:71604159-71604415(-)$1	1	121	124	9.0000
(((	chr19:58379486-58379756(+)$1	1	71	74	9.0000
(.(	chr15:25605431-25605661(-)$1	1	51	54	9.0000
..(	chr3:195420904-195421192(+)$1	1	33	36	9.0000
)))	chr14:39716485-39716737(+)$1	1	48	51	9.0000
((.	chr7:99634870-99635097(+)$1	1	28	31	9.0000
)))	chr4:140299846-140300107(+)$1	1	13	16	9.0000
..(	chr13:45150555-45150887(-)$1	1	61	64	9.0000
(.(	chr16:72992397-72992650(-)$1	1	4	7	9.0000
(.(	chr3:37365741-37366008(+)$1	1	56	59	9.0000
)))	chr16:20465530-20465799(+)$1	1	97	100	9.0000
.((	chr16:24802135-24802417(+)$1	1	49	52	9.0000
(((	chr20:8155289-8155584(+)$1	1	15	18	9.0000
...	chr17:78839445-78839739(+)$1	1	31	34	9.0000
(((	chr16:90233484-90233713(+)$1	1	59	62	9.0000
)))	chr3:60070716-60071012(-)$1	1	103	106	9.0000
(.(	chr19:12638424-12638684(-)$1	1	4	7	9.0000
)))	chr9:100777597-100777861(+)$1	1	47	50	9.0000
(((	chr11:108137800-108138084(+)$1	1	4	7	9.0000
((.	chr2:188378700-188378922(+)$1	1	23	26	9.0000
.((	chr12:12352924-12353189(-)$1	1	42	45	9.0000
)))	chr7:32744234-32744625(-)$1	1	202	205	9.0000
(((	chr8:100147723-100147996(+)$1	1	132	135	9.0000
...	chrX:132989174-132989411(-)$1	1	1	4	9.0000
...	chr21:34143622-34143929(-)$1	1	1	4	9.0000
(((	chr15:102025199-102025444(-)$1	1	69	72	9.0000
(.(	chr17:41286769-41287040(+)$1	1	140	143	9.0000
...	chr10:13541759-13542064(-)$1	1	24	27	9.0000
...	chr8:38404014-38404313(-)$1	1	1	4	9.0000

#PSSM
G : 0.58	g : 0.41	
A : 0.58	a : 0.41	
G : 0.57	g : 0.42	

#score	873.0000000000001
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_transcript_m2_run2.nuc.txt

#NT
UGG	chr16:28834835-28835122(+)$1	287	54	57	8.9999
UGG	chr20:39690057-39690302(+)$1	245	80	83	8.9999
UGG	chr20:19998035-19998286(+)$1	251	90	93	8.9999
UGG	chr9:127101873-127102147(+)$1	274	44	47	8.9999
UGG	chr19:42365239-42365508(+)$1	269	23	26	8.9999
UGG	chr3:184080984-184081219(+)$1	235	22	25	8.9999
UGG	chr12:100934524-100934790(+)$1	266	31	34	8.9999
UGG	chr17:80006748-80006988(-)$1	240	10	13	8.9999
UGG	chr15:85259076-85259329(-)$1	253	42	45	8.9999
UGG	chr17:41622204-41622416(-)$1	212	61	64	8.9999
UGG	chr20:31606107-31606386(+)$1	279	38	41	8.9999
UGG	chr11:66631071-66631316(-)$1	245	113	116	8.9999
UGG	chr22:31875301-31875529(-)$1	228	31	34	8.9999
UGG	chr6:43742053-43742310(+)$1	257	24	27	8.9999
UGG	chr19:810544-810791(+)$1	247	43	46	8.9999
UGG	chr16:66769807-66770053(-)$1	246	17	20	8.9999
UGG	chr2:242277132-242277376(+)$1	244	103	106	8.9999
UGG	chr17:26677594-26677861(-)$1	267	11	14	8.9999
ugg	chr3:196511772-196512005(-)$1	233	23	26	8.9999
UGG	chr1:67895459-67895747(-)$1	288	21	24	8.9999
UGG	chr16:89616946-89617186(+)$1	240	0	3	8.9999
UGG	chr16:89836385-89836647(-)$1	262	19	22	8.9999
UGG	chr17:73689492-73689756(+)$1	264	67	70	8.9999
UGG	chr10:60028988-60029274(+)$1	286	82	85	8.9999
UGG	chr1:235300966-235301255(-)$1	289	3	6	8.9999
UGG	chr17:48797123-48797373(+)$1	250	4	7	8.9999
UGG	chr3:48646399-48646661(-)$1	262	32	35	8.9999
UGG	chr20:31595506-31595730(+)$1	224	22	25	8.9999
UGG	chr8:6566346-6566593(+)$1	247	24	27	8.9999
UGG	chr17:56437945-56438202(-)$1	257	36	39	8.9999
UGG	chr22:46692753-46693040(+)$1	287	72	75	8.9999
UGG	chr20:3827698-3827969(+)$1	271	89	92	8.9999
UGG	chr6:53160280-53160530(-)$1	250	34	37	8.9999
UGG	chr16:709310-709554(+)$1	244	58	61	8.9999
UGG	chr16:89977009-89977256(+)$1	247	7	10	8.9999
UGG	chr8:38644623-38644919(+)$1	296	78	81	8.9999
UGG	chr20:31607494-31607732(+)$1	238	3	6	8.9999
UGG	chr13:113470429-113470700(+)$1	271	44	47	8.9999
UGG	chr15:59470413-59470664(-)$1	251	14	17	8.9999
UGG	chr19:56175039-56175300(+)$1	261	36	39	8.9999
UGG	chr2:152684469-152684714(-)$1	245	25	28	8.9999
UGG	chr14:39555944-39556200(-)$1	256	32	35	8.9999
UGG	chr11:46745015-46745233(+)$1	218	51	54	8.9999
UGG	chr2:241439138-241439441(-)$1	303	33	36	8.9999
UGG	chr1:1019547-1019802(-)$1	255	96	99	8.9999
UGG	chr8:90915020-90915269(+)$1	249	10	13	8.9999
UGG	chr17:4916968-4917222(+)$1	254	47	50	8.9999
UGG	chr5:7885876-7886146(+)$1	270	115	118	8.9999
UGG	chr4:74310771-74310979(+)$1	208	3	6	8.9999
UGG	chr12:125398990-125399203(-)$1	213	28	31	8.9999
UGG	chr16:66864539-66864852(-)$1	313	0	3	8.9999
UGG	chr6:132271255-132271486(-)$1	231	3	6	8.9999
UGG	chr5:172362275-172362557(+)$1	282	43	46	8.9999
UGG	chr10:33246913-33247150(-)$1	237	102	105	8.9999
UGG	chr11:22777428-22777703(+)$1	275	15	18	8.9999
UGG	chr19:55752138-55752383(-)$1	245	12	15	8.9999
Ugg	chr14:21538478-21538733(+)$1	255	20	23	8.9999
UGG	chr17:80674708-80674964(+)$1	256	142	145	8.9999
UGG	chr3:133465298-133465533(+)$1	235	11	14	8.9999
UGG	chr21:40191593-40191894(+)$1	301	46	49	8.9999
UGG	chr10:21827777-21828047(+)$1	270	12	15	8.9999
UGG	chr20:61597862-61598097(+)$1	235	14	17	8.9999
UGG	chr20:31595489-31595706(+)$1	217	39	42	8.9999
UGG	chr21:46930125-46930346(+)$1	221	51	54	8.9999
UGG	chr2:177162549-177162794(+)$1	245	115	118	8.9999
UGG	chr1:28907910-28908162(-)$1	252	50	53	8.9999
UGG	chr16:87960172-87960428(-)$1	256	20	23	8.9999
UGG	chr14:24563576-24563826(+)$1	250	8	11	8.9999
UGG	chr7:128843369-128843631(+)$1	262	130	133	8.9999
UGG	chr20:50384666-50384913(-)$1	247	51	54	8.9999
UGG	chr11:810320-810560(+)$1	240	2	5	8.9999
UGG	chr16:74346962-74347211(-)$1	249	142	145	8.9999
UGG	chr6:35436146-35436353(+)$1	207	76	79	8.9999
UGG	chr19:48255812-48256064(+)$1	252	5	8	8.9999
UGG	chr9:116958217-116958458(+)$1	241	28	31	8.9999
UGG	chr11:68213934-68214167(+)$1	233	18	21	8.9999
UGG	chr7:1026811-1027057(+)$1	246	30	33	8.9999
UGG	chr16:9186057-9186299(+)$1	242	21	24	8.9999
UGG	chr16:24970812-24971059(-)$1	247	122	125	8.9999
ugg	chr9:35731888-35732142(-)$1	254	105	108	8.9999
UGG	chr4:79362374-79362628(+)$1	254	51	54	8.9999
UGG	chr16:89627390-89627669(+)$1	279	28	31	8.9999
UGG	chr2:163200709-163200979(+)$1	270	50	53	8.9999
UGG	chr20:37377426-37377681(+)$1	255	11	14	8.9999
UGG	chr20:17613963-17614174(-)$1	211	23	26	8.9999
UGG	chr16:88872525-88872787(+)$1	262	35	38	8.9999
UGG	chr19:39125684-39125937(+)$1	253	53	56	8.9999
UGG	chr4:1801467-1801694(+)$1	227	63	66	8.9999
UGG	chr16:30012290-30012550(+)$1	260	77	80	8.9999
UGG	chr16:89958605-89958851(+)$1	246	32	35	8.9999
UGG	chr14:23536907-23537133(-)$1	226	39	42	8.9999
UGG	chr2:85198587-85198834(+)$1	247	101	104	8.9999
UGG	chr19:10765083-10765346(+)$1	263	5	8	8.9999
UGG	chr9:123628956-123629219(-)$1	263	16	19	8.9999
UGG	chr19:35551646-35551893(+)$1	247	42	45	8.9999
UGG	chr14:23447335-23447558(-)$1	223	4	7	8.9999

#otherMatches

#Struct PSSM
[a[	chr4:1321463-1321719(+)$1	256	15	18	8.9999
JJJ	chr16:28834835-28835122(+)$1	287	54	57	8.9999
&&&	chr20:39690057-39690302(+)$1	245	80	83	8.9999
#gg	chr20:19998035-19998286(+)$1	251	90	93	8.9999
ccc	chr9:127101873-127102147(+)$1	274	44	47	8.9999
cce	chr19:42365239-42365508(+)$1	269	23	26	8.9999
eee	chr3:184080984-184081219(+)$1	235	22	25	8.9999
ddd	chr12:100934524-100934790(+)$1	266	31	34	8.9999
LLF	chr17:80006748-80006988(-)$1	240	10	13	8.9999
tee	chr15:85259076-85259329(-)$1	253	42	45	8.9999
CCg	chr17:41622204-41622416(-)$1	212	61	64	8.9999
FFF	chr20:31606107-31606386(+)$1	279	38	41	8.9999
iii	chr11:66631071-66631316(-)$1	245	113	116	8.9999
vvv	chr22:31875301-31875529(-)$1	228	31	34	8.9999
fff	chr6:43742053-43742310(+)$1	257	24	27	8.9999
JJJ	chr19:810544-810791(+)$1	247	43	46	8.9999
LBB	chr16:66769807-66770053(-)$1	246	17	20	8.9999
hhh	chr2:242277132-242277376(+)$1	244	103	106	8.9999
GGG	chr17:26677594-26677861(-)$1	267	11	14	8.9999
DDD	chr3:196511772-196512005(-)$1	233	23	26	8.9999
Dcc	chr1:67895459-67895747(-)$1	288	21	24	8.9999
:::	chr16:89616946-89617186(+)$1	240	0	3	8.9999
!!d	chr16:89836385-89836647(-)$1	262	19	22	8.9999
ooo	chr17:73689492-73689756(+)$1	264	67	70	8.9999
hhh	chr10:60028988-60029274(+)$1	286	82	85	8.9999
:::	chr1:235300966-235301255(-)$1	289	3	6	8.9999
:dd	chr17:48797123-48797373(+)$1	250	4	7	8.9999
GGG	chr3:48646399-48646661(-)$1	262	32	35	8.9999
ELL	chr20:31595506-31595730(+)$1	224	22	25	8.9999
:dd	chr8:6566346-6566593(+)$1	247	24	27	8.9999
hdd	chr17:56437945-56438202(-)$1	257	36	39	8.9999
ooc	chr22:46692753-46693040(+)$1	287	72	75	8.9999
fff	chr20:3827698-3827969(+)$1	271	89	92	8.9999
ee[	chr6:53160280-53160530(-)$1	250	34	37	8.9999
$$$	chr16:709310-709554(+)$1	244	58	61	8.9999
ddd	chr16:89977009-89977256(+)$1	247	7	10	8.9999
iii	chr8:38644623-38644919(+)$1	296	78	81	8.9999
JJJ	chr20:31607494-31607732(+)$1	238	3	6	8.9999
ddb	chr13:113470429-113470700(+)$1	271	44	47	8.9999
b]c	chr15:59470413-59470664(-)$1	251	14	17	8.9999
:gg	chr19:56175039-56175300(+)$1	261	36	39	8.9999
fmm	chr2:152684469-152684714(-)$1	245	25	28	8.9999
eee	chr14:39555944-39556200(-)$1	256	32	35	8.9999
a55	chr11:46745015-46745233(+)$1	218	51	54	8.9999
ddd	chr2:241439138-241439441(-)$1	303	33	36	8.9999
[cc	chr1:1019547-1019802(-)$1	255	96	99	8.9999
eee	chr8:90915020-90915269(+)$1	249	10	13	8.9999
]bb	chr17:4916968-4917222(+)$1	254	47	50	8.9999
b66	chr5:7885876-7886146(+)$1	270	115	118	8.9999
[a[	chr4:74310771-74310979(+)$1	208	3	6	8.9999
FFF	chr12:125398990-125399203(-)$1	213	28	31	8.9999
:EE	chr16:66864539-66864852(-)$1	313	0	3	8.9999
eee	chr6:132271255-132271486(-)$1	231	3	6	8.9999
g33	chr5:172362275-172362557(+)$1	282	43	46	8.9999
ddm	chr10:33246913-33247150(-)$1	237	102	105	8.9999
JJJ	chr11:22777428-22777703(+)$1	275	15	18	8.9999
hhh	chr19:55752138-55752383(-)$1	245	12	15	8.9999
GGG	chr14:21538478-21538733(+)$1	255	20	23	8.9999
fff	chr17:80674708-80674964(+)$1	256	142	145	8.9999
ddd	chr3:133465298-133465533(+)$1	235	11	14	8.9999
ggg	chr21:40191593-40191894(+)$1	301	46	49	8.9999
D{B	chr10:21827777-21828047(+)$1	270	12	15	8.9999
qqq	chr20:61597862-61598097(+)$1	235	14	17	8.9999
ELL	chr20:31595489-31595706(+)$1	217	39	42	8.9999
EEd	chr21:46930125-46930346(+)$1	221	51	54	8.9999
eee	chr2:177162549-177162794(+)$1	245	115	118	8.9999
cco	chr1:28907910-28908162(-)$1	252	50	53	8.9999
{EE	chr16:87960172-87960428(-)$1	256	20	23	8.9999
DDD	chr14:24563576-24563826(+)$1	250	8	11	8.9999
I{B	chr7:128843369-128843631(+)$1	262	130	133	8.9999
b]a	chr20:50384666-50384913(-)$1	247	51	54	8.9999
:::	chr11:810320-810560(+)$1	240	2	5	8.9999
ddd	chr16:74346962-74347211(-)$1	249	142	145	8.9999
ddd	chr6:35436146-35436353(+)$1	207	76	79	8.9999
dd!	chr19:48255812-48256064(+)$1	252	5	8	8.9999
iii	chr9:116958217-116958458(+)$1	241	28	31	8.9999
:cc	chr11:68213934-68214167(+)$1	233	18	21	8.9999
ccd	chr7:1026811-1027057(+)$1	246	30	33	8.9999
eab	chr16:9186057-9186299(+)$1	242	21	24	8.9999
ggg	chr16:24970812-24971059(-)$1	247	122	125	8.9999
d[e	chr9:35731888-35732142(-)$1	254	105	108	8.9999
ccm	chr4:79362374-79362628(+)$1	254	51	54	8.9999
:::	chr16:89627390-89627669(+)$1	279	28	31	8.9999
KDD	chr2:163200709-163200979(+)$1	270	50	53	8.9999
ddd	chr20:37377426-37377681(+)$1	255	11	14	8.9999
b[b	chr20:17613963-17614174(-)$1	211	23	26	8.9999
ggg	chr16:88872525-88872787(+)$1	262	35	38	8.9999
fdd	chr19:39125684-39125937(+)$1	253	53	56	8.9999
c&&	chr4:1801467-1801694(+)$1	227	63	66	8.9999
ddd	chr16:30012290-30012550(+)$1	260	77	80	8.9999
iiF	chr16:89958605-89958851(+)$1	246	32	35	8.9999
:ff	chr14:23536907-23537133(-)$1	226	39	42	8.9999
d]d	chr2:85198587-85198834(+)$1	247	101	104	8.9999
:FF	chr19:10765083-10765346(+)$1	263	5	8	8.9999
ccm	chr9:123628956-123629219(-)$1	263	16	19	8.9999
iii	chr19:35551646-35551893(+)$1	247	42	45	8.9999
cc[	chr14:23447335-23447558(-)$1	223	4	7	8.9999

#DB
.(.	chr4:1321463-1321719(+)$1	1	15	18	8.9999
(((	chr16:28834835-28835122(+)$1	1	54	57	8.9999
...	chr20:39690057-39690302(+)$1	1	80	83	8.9999
.((	chr20:19998035-19998286(+)$1	1	90	93	8.9999
)))	chr9:127101873-127102147(+)$1	1	44	47	8.9999
(((	chr19:42365239-42365508(+)$1	1	23	26	8.9999
)))	chr3:184080984-184081219(+)$1	1	22	25	8.9999
(((	chr12:100934524-100934790(+)$1	1	31	34	8.9999
..(	chr17:80006748-80006988(-)$1	1	10	13	8.9999
.))	chr15:85259076-85259329(-)$1	1	42	45	8.9999
(((	chr17:41622204-41622416(-)$1	1	61	64	8.9999
(((	chr20:31606107-31606386(+)$1	1	38	41	8.9999
(((	chr11:66631071-66631316(-)$1	1	113	116	8.9999
...	chr22:31875301-31875529(-)$1	1	31	34	8.9999
(((	chr6:43742053-43742310(+)$1	1	24	27	8.9999
(((	chr19:810544-810791(+)$1	1	43	46	8.9999
.((	chr16:66769807-66770053(-)$1	1	17	20	8.9999
(((	chr2:242277132-242277376(+)$1	1	103	106	8.9999
(((	chr17:26677594-26677861(-)$1	1	11	14	8.9999
(((	chr3:196511772-196512005(-)$1	1	23	26	8.9999
(((	chr1:67895459-67895747(-)$1	1	21	24	8.9999
...	chr16:89616946-89617186(+)$1	1	0	3	8.9999
..(	chr16:89836385-89836647(-)$1	1	19	22	8.9999
...	chr17:73689492-73689756(+)$1	1	67	70	8.9999
(((	chr10:60028988-60029274(+)$1	1	82	85	8.9999
...	chr1:235300966-235301255(-)$1	1	3	6	8.9999
.((	chr17:48797123-48797373(+)$1	1	4	7	8.9999
(((	chr3:48646399-48646661(-)$1	1	32	35	8.9999
(..	chr20:31595506-31595730(+)$1	1	22	25	8.9999
.((	chr8:6566346-6566593(+)$1	1	24	27	8.9999
(((	chr17:56437945-56438202(-)$1	1	36	39	8.9999
..)	chr22:46692753-46693040(+)$1	1	72	75	8.9999
(((	chr20:3827698-3827969(+)$1	1	89	92	8.9999
((.	chr6:53160280-53160530(-)$1	1	34	37	8.9999
...	chr16:709310-709554(+)$1	1	58	61	8.9999
(((	chr16:89977009-89977256(+)$1	1	7	10	8.9999
(((	chr8:38644623-38644919(+)$1	1	78	81	8.9999
(((	chr20:31607494-31607732(+)$1	1	3	6	8.9999
(((	chr13:113470429-113470700(+)$1	1	44	47	8.9999
).)	chr15:59470413-59470664(-)$1	1	14	17	8.9999
.((	chr19:56175039-56175300(+)$1	1	36	39	8.9999
(..	chr2:152684469-152684714(-)$1	1	25	28	8.9999
)))	chr14:39555944-39556200(-)$1	1	32	35	8.9999
)..	chr11:46745015-46745233(+)$1	1	51	54	8.9999
(((	chr2:241439138-241439441(-)$1	1	33	36	8.9999
.((	chr1:1019547-1019802(-)$1	1	96	99	8.9999
(((	chr8:90915020-90915269(+)$1	1	10	13	8.9999
.))	chr17:4916968-4917222(+)$1	1	47	50	8.9999
)..	chr5:7885876-7886146(+)$1	1	115	118	8.9999
.(.	chr4:74310771-74310979(+)$1	1	3	6	8.9999
(((	chr12:125398990-125399203(-)$1	1	28	31	8.9999
.((	chr16:66864539-66864852(-)$1	1	0	3	8.9999
(((	chr6:132271255-132271486(-)$1	1	3	6	8.9999
)..	chr5:172362275-172362557(+)$1	1	43	46	8.9999
((.	chr10:33246913-33247150(-)$1	1	102	105	8.9999
(((	chr11:22777428-22777703(+)$1	1	15	18	8.9999
(((	chr19:55752138-55752383(-)$1	1	12	15	8.9999
(((	chr14:21538478-21538733(+)$1	1	20	23	8.9999
)))	chr17:80674708-80674964(+)$1	1	142	145	8.9999
(((	chr3:133465298-133465533(+)$1	1	11	14	8.9999
(((	chr21:40191593-40191894(+)$1	1	46	49	8.9999
(.(	chr10:21827777-21828047(+)$1	1	12	15	8.9999
...	chr20:61597862-61598097(+)$1	1	14	17	8.9999
(..	chr20:31595489-31595706(+)$1	1	39	42	8.9999
(((	chr21:46930125-46930346(+)$1	1	51	54	8.9999
)))	chr2:177162549-177162794(+)$1	1	115	118	8.9999
((.	chr1:28907910-28908162(-)$1	1	50	53	8.9999
.((	chr16:87960172-87960428(-)$1	1	20	23	8.9999
(((	chr14:24563576-24563826(+)$1	1	8	11	8.9999
(.(	chr7:128843369-128843631(+)$1	1	130	133	8.9999
).)	chr20:50384666-50384913(-)$1	1	51	54	8.9999
...	chr11:810320-810560(+)$1	1	2	5	8.9999
(((	chr16:74346962-74347211(-)$1	1	142	145	8.9999
(((	chr6:35436146-35436353(+)$1	1	76	79	8.9999
((.	chr19:48255812-48256064(+)$1	1	5	8	8.9999
)))	chr9:116958217-116958458(+)$1	1	28	31	8.9999
.((	chr11:68213934-68214167(+)$1	1	18	21	8.9999
)))	chr7:1026811-1027057(+)$1	1	30	33	8.9999
)))	chr16:9186057-9186299(+)$1	1	21	24	8.9999
(((	chr16:24970812-24971059(-)$1	1	122	125	8.9999
(.(	chr9:35731888-35732142(-)$1	1	105	108	8.9999
((.	chr4:79362374-79362628(+)$1	1	51	54	8.9999
...	chr16:89627390-89627669(+)$1	1	28	31	8.9999
.((	chr2:163200709-163200979(+)$1	1	50	53	8.9999
)))	chr20:37377426-37377681(+)$1	1	11	14	8.9999
(.(	chr20:17613963-17614174(-)$1	1	23	26	8.9999
)))	chr16:88872525-88872787(+)$1	1	35	38	8.9999
(((	chr19:39125684-39125937(+)$1	1	53	56	8.9999
(..	chr4:1801467-1801694(+)$1	1	63	66	8.9999
)))	chr16:30012290-30012550(+)$1	1	77	80	8.9999
))(	chr16:89958605-89958851(+)$1	1	32	35	8.9999
.((	chr14:23536907-23537133(-)$1	1	39	42	8.9999
).)	chr2:85198587-85198834(+)$1	1	101	104	8.9999
.((	chr19:10765083-10765346(+)$1	1	5	8	8.9999
((.	chr9:123628956-123629219(-)$1	1	16	19	8.9999
(((	chr19:35551646-35551893(+)$1	1	42	45	8.9999
((.	chr14:23447335-23447558(-)$1	1	4	7	8.9999

#PSSM
U : 0.97	u : 0.02	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_transcript_m1_run2.nuc.txt

#NT
gggccggggcggcggc	chr14:23790675-23790938(+)$1	263	60	76	29.1000
AGGCGGAGGCGGAGGC	chr13:20532876-20533082(+)$1	206	187	203	23.9000
GGCCGGAGGCGGAGGC	chr7:32931126-32931487(-)$1	361	205	221	22.5000
CAGCCGCGGCGGAGGC	chr19:5719784-5720053(-)$1	269	125	141	23.8000
gggccccggcgggAGG	chr17:40428152-40428440(-)$1	288	9	25	19.3000
UGGCGGCGGCGGCGGC	chr2:228336773-228337084(+)$1	311	121	137	28.6000
gggccgcggcgguggc	chr2:11484437-11484726(-)$1	289	114	130	30.4000
Uggcggcggcggcggc	chr4:83931827-83932086(-)$1	259	118	134	28.6000
gggccgcggggcuggg	chr13:42846192-42846476(+)$1	284	44	60	19.7000
GGGACGCGGCCCUGGC	chr20:62339306-62339597(+)$1	291	250	266	18.8000
GGGCUGCGGCGGGGCG	chr10:5932099-5932433(+)$1	334	51	67	22.2000
GGGUGGCGGCGGUCGA	chr16:1728199-1728461(+)$1	262	97	113	19.5000
UGGUGGCGGCGGCGGC	chr7:44058593-44058873(-)$1	280	109	125	25.6000
ggcgcgcggccgcggc	chr5:72921920-72922185(+)$1	265	36	52	20.9000
aggcGGCGGCGGCGGC	chr14:104313717-104314003(-)$1	286	129	145	28.6000
GGGCCGGGGCCGAGGG	chr6:158981030-158981282(+)$1	252	196	212	21.6000
AGGCAGCGGCGGCCGG	chr20:32274038-32274289(-)$1	251	108	124	20.5000
UGGCGGCGGCGGAGAC	chr8:67837625-67837869(-)$1	244	155	171	23.2000
gcggggcggcggcggc	chr8:25042151-25042402(+)$1	251	197	213	25.7000
GAGCCAUGGCGGCGGC	chr14:21458095-21458338(+)$1	243	61	77	20.9000
GAGCAGCGGCGGCGGG	chr7:94139080-94139320(+)$1	240	79	95	24.8000
gggccugggcggcggg	chr1:42800639-42800905(-)$1	266	201	217	22.5000
GGGCCGGGGCGGAGAG	chr16:69166417-69166697(+)$1	280	124	140	21.6000
GUGCCGCGGCGGAGUC	chr1:110881963-110882232(+)$1	269	88	104	22.5000
GAGCCGCGGGCGGGGC	chr3:148847342-148847658(+)$1	316	25	41	19.0000
Uggcggcggcggcggc	chr4:16227870-16228200(-)$1	330	2	18	28.6000
gcgccgcggcgcgggg	chr22:33454163-33454452(-)$1	289	26	42	20.3000
AGGGCGGGGCGGGGGC	chr11:67771369-67771676(-)$1	307	65	81	21.8000
GGGCCGACGCGGAGGC	chr20:44718325-44718577(-)$1	252	51	67	22.5000
GGUGAGUGGCGGCGGC	chr20:3140286-3140610(-)$1	324	198	214	19.7000
GUGCCGCGGCCGUGGG	chr1:8763253-8763564(-)$1	311	156	172	20.9000
gggcggcgggggggcc	chr7:77166753-77167016(+)$1	263	65	81	22.0000
GGGGUGCGUCGGUGGG	chr3:183602415-183602778(-)$1	363	193	209	19.1000
gagcggcggcggcggc	chr5:95297256-95297530(-)$1	274	69	85	28.5000
gggucggggcggggcc	chr3:33481672-33481933(-)$1	261	11	27	20.6000
cgggcgcggcggcggc	chr11:3013272-3013531(-)$1	259	135	151	26.0000
gggcggccgcggcggc	chr4:38665723-38666035(+)$1	312	7	23	27.1000
GGGCGGUGGAGGCAGC	chr10:103577977-103578294(-)$1	317	110	126	19.7000
cggcagcggcggcggc	chr15:23086259-23086523(-)$1	264	128	144	26.9000
GGGGAgcggcggcggc	chr2:39664146-39664418(-)$1	272	132	148	27.5000
GAGGCgcggcggcggc	chr2:48667835-48668101(+)$1	266	111	127	26.0000
AGGUGGGGGCGGGGGC	chr19:42758927-42759169(-)$1	242	38	54	21.3000
gggcggcggcggugac	chrX:146993372-146993641(+)$1	269	147	163	26.5000
GGGCGGGGUCGGCGGG	chr1:35544889-35545203(+)$1	314	78	94	22.3000
GCGCGCAGGCGGUGGC	chr6:42952199-42952539(+)$1	340	111	127	19.4000
gggcggcggcggcggg	chr19:1592615-1592950(-)$1	335	275	291	29.6000
GGGCCGCGGUCGCGGG	chr14:99946962-99947238(-)$1	276	18	34	21.5000
gggccgcggcgguggc	chr2:11484526-11484773(-)$1	247	161	177	30.4000
GCGGGGCGGCGGUGAC	chr3:47021090-47021383(+)$1	293	14	30	20.5000

#otherMatches

#Struct PSSM
b[bb[bb[bb[eeeee	chr2:62932881-62933159(+)$1	278	214	230	25.5000
IIKKDDDDHHHHHHHH	chr14:23790675-23790938(+)$1	263	60	76	29.1000
sssggggggg:::FFF	chr13:20532876-20533082(+)$1	206	187	203	23.9000
DDGGGGGGG{AKKBB{	chr7:32931126-32931487(-)$1	361	205	221	22.5000
b:eeeee!!hhhhhhh	chr19:5719784-5720053(-)$1	269	125	141	23.8000
ccceeeee[a[bb[bb	chr17:40428152-40428440(-)$1	288	9	25	19.3000
]ffffffccc[iiiii	chr2:228336773-228337084(+)$1	311	121	137	28.6000
=====GGGGGGG{GGG	chr2:11484437-11484726(-)$1	289	114	130	30.4000
b[eeeee!!ggggggg	chr4:83931827-83932086(-)$1	259	118	134	28.6000
GGGGGGG:a[eeeee#	chr13:42846192-42846476(+)$1	284	44	60	19.7000
d22bb22bbhhhhhhh	chr20:62339306-62339597(+)$1	291	250	266	18.8000
IIIII{A{BBeeeeec	chr10:5932099-5932433(+)$1	334	51	67	22.2000
ma]a]bb]cccccc55	chr16:1728199-1728461(+)$1	262	97	113	19.5000
d22cccffffff]ggg	chr7:44058593-44058873(-)$1	280	109	125	25.6000
dddd[ggggggg[ddd	chr5:72921920-72922185(+)$1	265	36	52	20.9000
2ccc22ggggggg]ff	chr14:104313717-104314003(-)$1	286	129	145	28.6000
GG:::::eeeee[fff	chr6:158981030-158981282(+)$1	252	196	212	21.6000
FFFF{HHHHHHHHKKB	chr20:32274038-32274289(-)$1	251	108	124	20.5000
mmccc]eeeee22ddd	chr8:67837625-67837869(-)$1	244	155	171	23.2000
ccc:::ddddmmmmdd	chr8:25042151-25042402(+)$1	251	197	213	25.7000
ooooooccc]eeeee]	chr14:21458095-21458338(+)$1	243	61	77	20.9000
bb####ggggggg###	chr7:94139080-94139320(+)$1	240	79	95	24.8000
oodddd]eeeee]eee	chr1:42800639-42800905(-)$1	266	201	217	22.5000
4444ccceeeee]bb2	chr16:69166417-69166697(+)$1	280	124	140	21.6000
bb]dddd22bb]eeee	chr1:110881963-110882232(+)$1	269	88	104	22.5000
b]hhhhhhhh:::III	chr3:148847342-148847658(+)$1	316	25	41	19.0000
BBEEEEEccc[bbmmm	chr4:16227870-16228200(-)$1	330	2	18	28.6000
DDDD:eeeee[cccnn	chr22:33454163-33454452(-)$1	289	26	42	20.3000
:bb[ffffffqqqqqq	chr11:67771369-67771676(-)$1	307	65	81	21.8000
bbdddd:cccmmmmcc	chr20:44718325-44718577(-)$1	252	51	67	22.5000
dd$$$$$dddd!!hhh	chr20:3140286-3140610(-)$1	324	198	214	19.7000
##ccc!!dddd[eeee	chr1:8763253-8763564(-)$1	311	156	172	20.9000
CJJJJJJJJJJJJJcc	chr7:77166753-77167016(+)$1	263	65	81	22.0000
nnnnneeeeeccc22f	chr3:183602415-183602778(-)$1	363	193	209	19.1000
33bb]eeeee]eeeee	chr5:95297256-95297530(-)$1	274	69	85	28.5000
pppdddd]aHHHHHHH	chr3:33481672-33481933(-)$1	261	11	27	20.6000
ii22bbdddddddd]b	chr11:3013272-3013531(-)$1	259	135	151	26.0000
EEEE::EEEEE{GGGG	chr4:38665723-38666035(+)$1	312	7	23	27.1000
EEEEE{GGGGGGGLLL	chr10:103577977-103578294(-)$1	317	110	126	19.7000
emmmmeeeee]bbccc	chr15:23086259-23086523(-)$1	264	128	144	26.9000
rra22ddddggggggg	chr2:39664146-39664418(-)$1	272	132	148	27.5000
b]ccc]bb::ccc[bb	chr2:48667835-48668101(+)$1	266	111	127	26.0000
qqbb]dddd::iiiii	chr19:42758927-42759169(-)$1	242	38	54	21.3000
eee:==========[a	chrX:146993372-146993641(+)$1	269	147	163	26.5000
iiiiiiii[ddddlll	chr1:35544889-35545203(+)$1	314	78	94	22.3000
lldddd22a]cccddd	chr6:42952199-42952539(+)$1	340	111	127	19.4000
cccc22dddd]hhhhh	chr19:1592615-1592950(-)$1	335	275	291	29.6000
eee!!ffffffmmmmf	chr14:99946962-99947238(-)$1	276	18	34	21.5000
eeeee]ccc]bb]ccc	chr2:11484526-11484773(-)$1	247	161	177	30.4000
bIIIIIIIII{CCC:e	chr3:47021090-47021383(+)$1	293	14	30	20.5000

#DB
(.((.((.((.(((((	chr2:62932881-62933159(+)$1	1	214	230	25.5000
((..((((((((((((	chr14:23790675-23790938(+)$1	1	60	76	29.1000
...)))))))...)))	chr13:20532876-20533082(+)$1	1	187	203	23.9000
(((((((((.(..((.	chr7:32931126-32931487(-)$1	1	205	221	22.5000
).(((((..(((((((	chr19:5719784-5720053(-)$1	1	125	141	23.8000
((((((((.(.((.((	chr17:40428152-40428440(-)$1	1	9	25	19.3000
.))))))(((.(((((	chr2:228336773-228337084(+)$1	1	121	137	28.6000
)))))(((((((.(((	chr2:11484437-11484726(-)$1	1	114	130	30.4000
(.(((((..(((((((	chr4:83931827-83932086(-)$1	1	118	134	28.6000
(((((((.(.(((((.	chr13:42846192-42846476(+)$1	1	44	60	19.7000
)..))..)))))))))	chr20:62339306-62339597(+)$1	1	250	266	18.8000
(((((.(.((((((((	chr10:5932099-5932433(+)$1	1	51	67	22.2000
.).).)).))))))..	chr16:1728199-1728461(+)$1	1	97	113	19.5000
)..))))))))).)))	chr7:44058593-44058873(-)$1	1	109	125	25.6000
((((.(((((((.(((	chr5:72921920-72922185(+)$1	1	36	52	20.9000
.)))..))))))).))	chr14:104313717-104314003(-)$1	1	129	145	28.6000
)).....(((((.(((	chr6:158981030-158981282(+)$1	1	196	212	21.6000
((((.((((((((..(	chr20:32274038-32274289(-)$1	1	108	124	20.5000
..))).)))))..)))	chr8:67837625-67837869(-)$1	1	155	171	23.2000
)))...((((....))	chr8:25042151-25042402(+)$1	1	197	213	25.7000
......))).))))).	chr14:21458095-21458338(+)$1	1	61	77	20.9000
((....(((((((...	chr7:94139080-94139320(+)$1	1	79	95	24.8000
..)))).))))).)))	chr1:42800639-42800905(-)$1	1	201	217	22.5000
....)))))))).)).	chr16:69166417-69166697(+)$1	1	124	140	21.6000
)).))))..)).))))	chr1:110881963-110882232(+)$1	1	88	104	22.5000
).))))))))...(((	chr3:148847342-148847658(+)$1	1	25	41	19.0000
((((((((((.((...	chr4:16227870-16228200(-)$1	1	2	18	28.6000
((((.(((((.(((..	chr22:33454163-33454452(-)$1	1	26	42	20.3000
.((.((((((......	chr11:67771369-67771676(-)$1	1	65	81	21.8000
)))))).(((....))	chr20:44718325-44718577(-)$1	1	51	67	22.5000
((.....((((..(((	chr20:3140286-3140610(-)$1	1	198	214	19.7000
..(((..((((.((((	chr1:8763253-8763564(-)$1	1	156	172	20.9000
((((((((((((((((	chr7:77166753-77167016(+)$1	1	65	81	22.0000
.....))))))))..)	chr3:183602415-183602778(-)$1	1	193	209	19.1000
..)).))))).)))))	chr5:95297256-95297530(-)$1	1	69	85	28.5000
...)))).)(((((((	chr3:33481672-33481933(-)$1	1	11	27	20.6000
))..)))))))))).)	chr11:3013272-3013531(-)$1	1	135	151	26.0000
((((..(((((.((((	chr4:38665723-38666035(+)$1	1	7	23	27.1000
(((((.(((((((...	chr10:103577977-103578294(-)$1	1	110	126	19.7000
(....))))).))(((	chr15:23086259-23086523(-)$1	1	128	144	26.9000
..)..)))))))))))	chr2:39664146-39664418(-)$1	1	132	148	27.5000
).))).))..(((.((	chr2:48667835-48668101(+)$1	1	111	127	26.0000
..)).))))..(((((	chr19:42758927-42759169(-)$1	1	38	54	21.3000
))).((((((((((.(	chrX:146993372-146993641(+)$1	1	147	163	26.5000
((((((((.((((...	chr1:35544889-35545203(+)$1	1	78	94	22.3000
..))))..).)))(((	chr6:42952199-42952539(+)$1	1	111	127	19.4000
))))..)))).)))))	chr19:1592615-1592950(-)$1	1	275	291	29.6000
(((..((((((....)	chr14:99946962-99947238(-)$1	1	18	34	21.5000
))))).))).)).)))	chr2:11484526-11484773(-)$1	1	161	177	30.4000
)(((((((((.(((.(	chr3:47021090-47021383(+)$1	1	14	30	20.5000

#PSSM
G : 0.42	g : 0.30	U : 0.10	A : 0.08	c : 0.06	C : 0.02	a : 0.02	
G : 0.40	g : 0.36	A : 0.10	c : 0.04	U : 0.04	C : 0.04	a : 0.02	
G : 0.54	g : 0.40	C : 0.02	c : 0.02	U : 0.02	
C : 0.38	c : 0.32	G : 0.12	U : 0.06	g : 0.06	u : 0.04	A : 0.02	
G : 0.23	C : 0.23	c : 0.19	g : 0.18	A : 0.08	U : 0.04	a : 0.02	
G : 0.52	g : 0.40	c : 0.02	A : 0.02	u : 0.02	C : 0.02	
c : 0.38	C : 0.32	G : 0.10	A : 0.08	g : 0.06	U : 0.06	
G : 0.54	g : 0.42	C : 0.02	c : 0.02	
G : 0.52	g : 0.44	U : 0.04	
C : 0.50	c : 0.40	g : 0.04	G : 0.02	A : 0.02	U : 0.02	
G : 0.46	g : 0.42	C : 0.10	c : 0.02	
G : 0.54	g : 0.40	c : 0.04	C : 0.02	
c : 0.27	C : 0.19	A : 0.16	U : 0.12	g : 0.08	u : 0.08	G : 0.08	
G : 0.50	g : 0.42	A : 0.04	C : 0.04	
G : 0.48	g : 0.36	A : 0.06	c : 0.04	C : 0.02	U : 0.02	a : 0.02	
C : 0.36	c : 0.34	G : 0.19	g : 0.08	A : 0.02	

#score	1178.0000000000014
#seq	50
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_transcript_m2_run1.nuc.txt

#NT
CCU	chr11:2152477-2152680(-)$1	203	142	145	9.0000
CCU	chr12:124842282-124842530(-)$1	248	1	4	9.0000
ccu	chr16:46949447-46949700(+)$1	253	24	27	9.0000
CCU	chr21:47560293-47560534(-)$1	241	32	35	9.0000
CCU	chr16:46949103-46949371(+)$1	268	18	21	9.0000
CCU	chr20:17929525-17929753(-)$1	228	9	12	9.0000
CCU	chr15:93426351-93426603(+)$1	252	76	79	9.0000
CCU	chr17:94502-94754(-)$1	252	147	150	9.0000
CCU	chr17:59474132-59474406(-)$1	274	1	4	9.0000
CCU	chr22:46752270-46752539(+)$1	269	22	25	9.0000
CCU	chr16:31199281-31199530(+)$1	249	63	66	9.0000
CCU	chr14:21963401-21963758(+)$1	357	31	34	9.0000
CCU	chr2:241468160-241468407(-)$1	247	6	9	9.0000
CCU	chr6:32940629-32940914(+)$1	285	33	36	9.0000
CCU	chr21:46915761-46916008(+)$1	247	53	56	9.0000
CCU	chr19:8528361-8528680(+)$1	319	10	13	9.0000
CCU	chr8:11689129-11689362(+)$1	233	140	143	9.0000
CCU	chr21:46862094-46862341(+)$1	247	1	4	9.0000
CCU	chr22:48982425-48982681(+)$1	256	59	62	9.0000
CCU	chr19:49607531-49607784(+)$1	253	13	16	9.0000
CCU	chr16:4718955-4719236(+)$1	281	155	158	9.0000
ccu	chr22:35735373-35735666(+)$1	293	25	28	9.0000
CCU	chr17:70557394-70557674(-)$1	280	8	11	9.0000
CCU	chr19:33949970-33950270(-)$1	300	47	50	9.0000
CCU	chr17:63555225-63555478(-)$1	253	2	5	9.0000
CCU	chrX:153577131-153577373(-)$1	242	11	14	9.0000
CCU	chr7:5346534-5346824(-)$1	290	18	21	9.0000
CCU	chr16:2820212-2820477(+)$1	265	33	36	9.0000
CCU	chr22:35738403-35738662(+)$1	259	53	56	9.0000
CCU	chr1:227165151-227165405(+)$1	254	11	14	9.0000
ccu	chr11:63880862-63881177(-)$1	315	14	17	9.0000
CCU	chr2:20867895-20868159(+)$1	264	17	20	9.0000
ccu	chr15:90356794-90357015(-)$1	221	6	9	9.0000
CCU	chr21:44527354-44527621(-)$1	267	33	36	9.0000
CCU	chr19:33948817-33949111(-)$1	294	158	161	9.0000
CCU	chr11:2152370-2152608(-)$1	238	70	73	9.0000
ccu	chr3:126258725-126258947(+)$1	222	63	66	9.0000
CCU	chr20:60735375-60735614(+)$1	239	104	107	9.0000
CCU	chr16:88545179-88545434(+)$1	255	55	58	9.0000
CCU	chr21:46873518-46873768(+)$1	250	48	51	9.0000
CCU	chr16:89555650-89555904(-)$1	254	143	146	9.0000
CCU	chr20:45911586-45911833(-)$1	247	149	152	9.0000
ccu	chr2:101458126-101458366(+)$1	240	84	87	9.0000
CCU	chr18:77673170-77673426(-)$1	256	27	30	9.0000
CCU	chr2:61764994-61765258(-)$1	264	65	68	9.0000
ccu	chr7:158135786-158136025(-)$1	239	11	14	9.0000
ccu	chr7:157632455-157632695(-)$1	240	186	189	9.0000
CCU	chr11:2152432-2152638(-)$1	206	100	103	9.0000
CCU	chr3:49052723-49052983(+)$1	260	3	6	9.0000
ccu	chr4:1217949-1218209(-)$1	260	1	4	9.0000
CCU	chr2:54872410-54872652(+)$1	242	20	23	9.0000
CCU	chr21:46905502-46905745(+)$1	243	11	14	9.0000
CCU	chr3:9862070-9862298(+)$1	228	3	6	9.0000
CCU	chr20:62685272-62685536(+)$1	264	25	28	9.0000
CCU	chr17:79670534-79670865(+)$1	331	20	23	9.0000
CCU	chr15:85191612-85191886(-)$1	274	16	19	9.0000
CCU	chr14:21546373-21546619(+)$1	246	143	146	9.0000
CCU	chr9:136718561-136718834(-)$1	273	55	58	9.0000
CCU	chrX:152018831-152019090(+)$1	259	12	15	9.0000
CCU	chr10:105376770-105377044(-)$1	274	100	103	9.0000
CCU	chr7:157582185-157582450(-)$1	265	162	165	9.0000
ccu	chr11:2152616-2152818(-)$1	202	134	137	9.0000
CCU	chr3:48470707-48470948(-)$1	241	12	15	9.0000
CCU	chr2:36605633-36605892(+)$1	259	124	127	9.0000
CCU	chr1:227167664-227167925(+)$1	261	26	29	9.0000
CCU	chr9:136715702-136715971(-)$1	269	21	24	9.0000
CCU	chr22:39709904-39710160(-)$1	256	5	8	9.0000
CCU	chr12:76477664-76477900(-)$1	236	213	216	9.0000
ccu	chr11:2152489-2152692(-)$1	203	8	11	9.0000
CCU	chr14:54423357-54423614(-)$1	257	170	173	9.0000
CCU	chr19:4037221-4037469(+)$1	248	4	7	9.0000
ccu	chr4:7029752-7030052(+)$1	300	18	21	9.0000
CCU	chr1:155281905-155282117(+)$1	212	10	13	9.0000
ccu	chr20:35024373-35024636(+)$1	263	23	26	9.0000
CCU	chr17:79962291-79962504(+)$1	213	18	21	9.0000
CCU	chr5:176516694-176516909(+)$1	215	89	92	9.0000
CCU	chr6:32942495-32942733(+)$1	238	17	20	9.0000
CCU	chr9:136848724-136848997(-)$1	273	40	43	9.0000
CCU	chr19:1410012-1410249(+)$1	237	8	11	9.0000
CCU	chr21:46905545-46905791(+)$1	246	0	3	9.0000
CCU	chr13:113767286-113767615(+)$1	329	17	20	9.0000
ccu	chr6:159047867-159048141(+)$1	274	6	9	9.0000
CCU	chr7:2414097-2414367(+)$1	270	1	4	9.0000
ccu	chr6:170167696-170167976(+)$1	280	18	21	9.0000
CCU	chr1:44026004-44026302(+)$1	298	124	127	9.0000
CCU	chr2:202001739-202002029(+)$1	290	30	33	9.0000
CCU	chr9:136660517-136660766(-)$1	249	60	63	9.0000
CCU	chr16:50632829-50633070(+)$1	241	180	183	9.0000
ccu	chrX:152909662-152909901(+)$1	239	2	5	9.0000
CCU	chr11:2152471-2152677(-)$1	206	139	142	9.0000
CCU	chr10:74034088-74034314(+)$1	226	29	32	9.0000
ccu	chr3:194829973-194830270(-)$1	297	50	53	9.0000
CCU	chr16:11990430-11990691(-)$1	261	133	136	9.0000
CCU	chr11:2152249-2152459(-)$1	210	57	60	9.0000
CCU	chr16:70714463-70714766(-)$1	303	19	22	9.0000
CCU	chr15:75663280-75663602(-)$1	322	180	183	9.0000
CCU	chr16:279078-279345(-)$1	267	33	36	9.0000
ccu	chr10:134178168-134178426(+)$1	258	76	79	9.0000
ccu	chr6:159047972-159048223(+)$1	251	5	8	9.0000

#otherMatches

#Struct PSSM
ooc	chr11:2152509-2152730(-)$1	221	46	49	9.0000
d55	chr11:2152477-2152680(-)$1	203	142	145	9.0000
:::	chr12:124842282-124842530(-)$1	248	1	4	9.0000
:::	chr16:46949447-46949700(+)$1	253	24	27	9.0000
===	chr21:47560293-47560534(-)$1	241	32	35	9.0000
rrr	chr16:46949103-46949371(+)$1	268	18	21	9.0000
ddd	chr20:17929525-17929753(-)$1	228	9	12	9.0000
bb:	chr15:93426351-93426603(+)$1	252	76	79	9.0000
===	chr17:94502-94754(-)$1	252	147	150	9.0000
:::	chr17:59474132-59474406(-)$1	274	1	4	9.0000
DDD	chr22:46752270-46752539(+)$1	269	22	25	9.0000
dd[	chr16:31199281-31199530(+)$1	249	63	66	9.0000
KBB	chr14:21963401-21963758(+)$1	357	31	34	9.0000
c[d	chr2:241468160-241468407(-)$1	247	6	9	9.0000
DDg	chr6:32940629-32940914(+)$1	285	33	36	9.0000
coo	chr21:46915761-46916008(+)$1	247	53	56	9.0000
DDG	chr19:8528361-8528680(+)$1	319	10	13	9.0000
odd	chr8:11689129-11689362(+)$1	233	140	143	9.0000
CC{	chr21:46862094-46862341(+)$1	247	1	4	9.0000
"dd	chr22:48982425-48982681(+)$1	256	59	62	9.0000
nee	chr19:49607531-49607784(+)$1	253	13	16	9.0000
ndd	chr16:4718955-4719236(+)$1	281	155	158	9.0000
JJJ	chr22:35735373-35735666(+)$1	293	25	28	9.0000
III	chr17:70557394-70557674(-)$1	280	8	11	9.0000
ea[	chr19:33949970-33950270(-)$1	300	47	50	9.0000
fff	chr17:63555225-63555478(-)$1	253	2	5	9.0000
FFF	chrX:153577131-153577373(-)$1	242	11	14	9.0000
::h	chr7:5346534-5346824(-)$1	290	18	21	9.0000
FFF	chr16:2820212-2820477(+)$1	265	33	36	9.0000
eee	chr22:35738403-35738662(+)$1	259	53	56	9.0000
dd:	chr1:227165151-227165405(+)$1	254	11	14	9.0000
:::	chr11:63880862-63881177(-)$1	315	14	17	9.0000
EE{	chr2:20867895-20868159(+)$1	264	17	20	9.0000
ccc	chr15:90356794-90357015(-)$1	221	6	9	9.0000
bb]	chr21:44527354-44527621(-)$1	267	33	36	9.0000
:::	chr19:33948817-33949111(-)$1	294	158	161	9.0000
EEE	chr11:2152370-2152608(-)$1	238	70	73	9.0000
DDD	chr3:126258725-126258947(+)$1	222	63	66	9.0000
eee	chr20:60735375-60735614(+)$1	239	104	107	9.0000
CCC	chr16:88545179-88545434(+)$1	255	55	58	9.0000
eee	chr21:46873518-46873768(+)$1	250	48	51	9.0000
fff	chr16:89555650-89555904(-)$1	254	143	146	9.0000
ccc	chr20:45911586-45911833(-)$1	247	149	152	9.0000
qqd	chr2:101458126-101458366(+)$1	240	84	87	9.0000
ddd	chr18:77673170-77673426(-)$1	256	27	30	9.0000
JJJ	chr2:61764994-61765258(-)$1	264	65	68	9.0000
hhq	chr7:158135786-158136025(-)$1	239	11	14	9.0000
:cc	chr7:157632455-157632695(-)$1	240	186	189	9.0000
d::	chr11:2152432-2152638(-)$1	206	100	103	9.0000
GGG	chr3:49052723-49052983(+)$1	260	3	6	9.0000
CC:	chr4:1217949-1218209(-)$1	260	1	4	9.0000
ddd	chr2:54872410-54872652(+)$1	242	20	23	9.0000
eee	chr21:46905502-46905745(+)$1	243	11	14	9.0000
cmm	chr3:9862070-9862298(+)$1	228	3	6	9.0000
fff	chr20:62685272-62685536(+)$1	264	25	28	9.0000
ffl	chr17:79670534-79670865(+)$1	331	20	23	9.0000
DDK	chr15:85191612-85191886(-)$1	274	16	19	9.0000
ddd	chr14:21546373-21546619(+)$1	246	143	146	9.0000
gDD	chr9:136718561-136718834(-)$1	273	55	58	9.0000
mgg	chrX:152018831-152019090(+)$1	259	12	15	9.0000
fff	chr10:105376770-105377044(-)$1	274	100	103	9.0000
bbm	chr7:157582185-157582450(-)$1	265	162	165	9.0000
ooc	chr11:2152616-2152818(-)$1	202	134	137	9.0000
ccc	chr3:48470707-48470948(-)$1	241	12	15	9.0000
mmm	chr2:36605633-36605892(+)$1	259	124	127	9.0000
GGG	chr1:227167664-227167925(+)$1	261	26	29	9.0000
B{D	chr9:136715702-136715971(-)$1	269	21	24	9.0000
:::	chr22:39709904-39710160(-)$1	256	5	8	9.0000
ccd	chr12:76477664-76477900(-)$1	236	213	216	9.0000
:::	chr11:2152489-2152692(-)$1	203	8	11	9.0000
ccc	chr14:54423357-54423614(-)$1	257	170	173	9.0000
mmm	chr19:4037221-4037469(+)$1	248	4	7	9.0000
^^^	chr4:7029752-7030052(+)$1	300	18	21	9.0000
hhh	chr1:155281905-155282117(+)$1	212	10	13	9.0000
mmm	chr20:35024373-35024636(+)$1	263	23	26	9.0000
EEE	chr17:79962291-79962504(+)$1	213	18	21	9.0000
hhh	chr5:176516694-176516909(+)$1	215	89	92	9.0000
fqq	chr6:32942495-32942733(+)$1	238	17	20	9.0000
fff	chr9:136848724-136848997(-)$1	273	40	43	9.0000
ccc	chr19:1410012-1410249(+)$1	237	8	11	9.0000
:::	chr21:46905545-46905791(+)$1	246	0	3	9.0000
ddd	chr13:113767286-113767615(+)$1	329	17	20	9.0000
:::	chr6:159047867-159048141(+)$1	274	6	9	9.0000
cc!	chr7:2414097-2414367(+)$1	270	1	4	9.0000
:::	chr6:170167696-170167976(+)$1	280	18	21	9.0000
eee	chr1:44026004-44026302(+)$1	298	124	127	9.0000
mbb	chr2:202001739-202002029(+)$1	290	30	33	9.0000
ee]	chr9:136660517-136660766(-)$1	249	60	63	9.0000
ggg	chr16:50632829-50633070(+)$1	241	180	183	9.0000
CCM	chrX:152909662-152909901(+)$1	239	2	5	9.0000
EEE	chr11:2152471-2152677(-)$1	206	139	142	9.0000
hhh	chr10:74034088-74034314(+)$1	226	29	32	9.0000
c::	chr3:194829973-194830270(-)$1	297	50	53	9.0000
ddr	chr16:11990430-11990691(-)$1	261	133	136	9.0000
DD:	chr11:2152249-2152459(-)$1	210	57	60	9.0000
fff	chr16:70714463-70714766(-)$1	303	19	22	9.0000
~~~	chr15:75663280-75663602(-)$1	322	180	183	9.0000
d::	chr16:279078-279345(-)$1	267	33	36	9.0000
^^^	chr10:134178168-134178426(+)$1	258	76	79	9.0000
:::	chr6:159047972-159048223(+)$1	251	5	8	9.0000

#DB
..)	chr11:2152509-2152730(-)$1	1	46	49	9.0000
)..	chr11:2152477-2152680(-)$1	1	142	145	9.0000
...	chr12:124842282-124842530(-)$1	1	1	4	9.0000
...	chr16:46949447-46949700(+)$1	1	24	27	9.0000
(((	chr21:47560293-47560534(-)$1	1	32	35	9.0000
...	chr16:46949103-46949371(+)$1	1	18	21	9.0000
(((	chr20:17929525-17929753(-)$1	1	9	12	9.0000
)).	chr15:93426351-93426603(+)$1	1	76	79	9.0000
(((	chr17:94502-94754(-)$1	1	147	150	9.0000
...	chr17:59474132-59474406(-)$1	1	1	4	9.0000
(((	chr22:46752270-46752539(+)$1	1	22	25	9.0000
((.	chr16:31199281-31199530(+)$1	1	63	66	9.0000
.((	chr14:21963401-21963758(+)$1	1	31	34	9.0000
(.(	chr2:241468160-241468407(-)$1	1	6	9	9.0000
(((	chr6:32940629-32940914(+)$1	1	33	36	9.0000
(..	chr21:46915761-46916008(+)$1	1	53	56	9.0000
(((	chr19:8528361-8528680(+)$1	1	10	13	9.0000
.))	chr8:11689129-11689362(+)$1	1	140	143	9.0000
((.	chr21:46862094-46862341(+)$1	1	1	4	9.0000
.((	chr22:48982425-48982681(+)$1	1	59	62	9.0000
.))	chr19:49607531-49607784(+)$1	1	13	16	9.0000
.))	chr16:4718955-4719236(+)$1	1	155	158	9.0000
(((	chr22:35735373-35735666(+)$1	1	25	28	9.0000
(((	chr17:70557394-70557674(-)$1	1	8	11	9.0000
((.	chr19:33949970-33950270(-)$1	1	47	50	9.0000
(((	chr17:63555225-63555478(-)$1	1	2	5	9.0000
(((	chrX:153577131-153577373(-)$1	1	11	14	9.0000
..(	chr7:5346534-5346824(-)$1	1	18	21	9.0000
(((	chr16:2820212-2820477(+)$1	1	33	36	9.0000
)))	chr22:35738403-35738662(+)$1	1	53	56	9.0000
)).	chr1:227165151-227165405(+)$1	1	11	14	9.0000
...	chr11:63880862-63881177(-)$1	1	14	17	9.0000
((.	chr2:20867895-20868159(+)$1	1	17	20	9.0000
(((	chr15:90356794-90357015(-)$1	1	6	9	9.0000
)).	chr21:44527354-44527621(-)$1	1	33	36	9.0000
...	chr19:33948817-33949111(-)$1	1	158	161	9.0000
(((	chr11:2152370-2152608(-)$1	1	70	73	9.0000
(((	chr3:126258725-126258947(+)$1	1	63	66	9.0000
)))	chr20:60735375-60735614(+)$1	1	104	107	9.0000
(((	chr16:88545179-88545434(+)$1	1	55	58	9.0000
)))	chr21:46873518-46873768(+)$1	1	48	51	9.0000
)))	chr16:89555650-89555904(-)$1	1	143	146	9.0000
)))	chr20:45911586-45911833(-)$1	1	149	152	9.0000
..)	chr2:101458126-101458366(+)$1	1	84	87	9.0000
(((	chr18:77673170-77673426(-)$1	1	27	30	9.0000
(((	chr2:61764994-61765258(-)$1	1	65	68	9.0000
((.	chr7:158135786-158136025(-)$1	1	11	14	9.0000
.((	chr7:157632455-157632695(-)$1	1	186	189	9.0000
)..	chr11:2152432-2152638(-)$1	1	100	103	9.0000
(((	chr3:49052723-49052983(+)$1	1	3	6	9.0000
((.	chr4:1217949-1218209(-)$1	1	1	4	9.0000
(((	chr2:54872410-54872652(+)$1	1	20	23	9.0000
(((	chr21:46905502-46905745(+)$1	1	11	14	9.0000
(..	chr3:9862070-9862298(+)$1	1	3	6	9.0000
(((	chr20:62685272-62685536(+)$1	1	25	28	9.0000
((.	chr17:79670534-79670865(+)$1	1	20	23	9.0000
((.	chr15:85191612-85191886(-)$1	1	16	19	9.0000
)))	chr14:21546373-21546619(+)$1	1	143	146	9.0000
)((	chr9:136718561-136718834(-)$1	1	55	58	9.0000
.))	chrX:152018831-152019090(+)$1	1	12	15	9.0000
)))	chr10:105376770-105377044(-)$1	1	100	103	9.0000
((.	chr7:157582185-157582450(-)$1	1	162	165	9.0000
..)	chr11:2152616-2152818(-)$1	1	134	137	9.0000
(((	chr3:48470707-48470948(-)$1	1	12	15	9.0000
...	chr2:36605633-36605892(+)$1	1	124	127	9.0000
(((	chr1:227167664-227167925(+)$1	1	26	29	9.0000
(.(	chr9:136715702-136715971(-)$1	1	21	24	9.0000
...	chr22:39709904-39710160(-)$1	1	5	8	9.0000
)))	chr12:76477664-76477900(-)$1	1	213	216	9.0000
...	chr11:2152489-2152692(-)$1	1	8	11	9.0000
)))	chr14:54423357-54423614(-)$1	1	170	173	9.0000
...	chr19:4037221-4037469(+)$1	1	4	7	9.0000
...	chr4:7029752-7030052(+)$1	1	18	21	9.0000
(((	chr1:155281905-155282117(+)$1	1	10	13	9.0000
...	chr20:35024373-35024636(+)$1	1	23	26	9.0000
(((	chr17:79962291-79962504(+)$1	1	18	21	9.0000
(((	chr5:176516694-176516909(+)$1	1	89	92	9.0000
(..	chr6:32942495-32942733(+)$1	1	17	20	9.0000
(((	chr9:136848724-136848997(-)$1	1	40	43	9.0000
(((	chr19:1410012-1410249(+)$1	1	8	11	9.0000
...	chr21:46905545-46905791(+)$1	1	0	3	9.0000
)))	chr13:113767286-113767615(+)$1	1	17	20	9.0000
...	chr6:159047867-159048141(+)$1	1	6	9	9.0000
((.	chr7:2414097-2414367(+)$1	1	1	4	9.0000
...	chr6:170167696-170167976(+)$1	1	18	21	9.0000
(((	chr1:44026004-44026302(+)$1	1	124	127	9.0000
.))	chr2:202001739-202002029(+)$1	1	30	33	9.0000
)).	chr9:136660517-136660766(-)$1	1	60	63	9.0000
(((	chr16:50632829-50633070(+)$1	1	180	183	9.0000
((.	chrX:152909662-152909901(+)$1	1	2	5	9.0000
(((	chr11:2152471-2152677(-)$1	1	139	142	9.0000
(((	chr10:74034088-74034314(+)$1	1	29	32	9.0000
)..	chr3:194829973-194830270(-)$1	1	50	53	9.0000
((.	chr16:11990430-11990691(-)$1	1	133	136	9.0000
((.	chr11:2152249-2152459(-)$1	1	57	60	9.0000
(((	chr16:70714463-70714766(-)$1	1	19	22	9.0000
...	chr15:75663280-75663602(-)$1	1	180	183	9.0000
)..	chr16:279078-279345(-)$1	1	33	36	9.0000
...	chr10:134178168-134178426(+)$1	1	76	79	9.0000
...	chr6:159047972-159048223(+)$1	1	5	8	9.0000

#PSSM
C : 0.80	c : 0.20	
C : 0.80	c : 0.20	
U : 0.80	u : 0.20	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_transcript_m2_run2.nuc.txt

#NT
AGGAGGAGG	chr20:57465131-57465426(+)$1	295	153	162	22.0000
AGGAGGAGA	chr12:19592964-19593369(+)$1	405	18	27	17.2325
AGGAGGUGG	chr6:15496671-15496913(+)$1	242	43	52	17.8139
AGGAGGCGG	chr19:11559649-11559872(+)$1	223	1	10	17.9302
AGGUGGAGG	chr11:59560472-59560737(+)$1	265	249	258	17.3488
AGGAGCAAG	chr2:131976037-131976314(+)$1	277	109	118	15.0232
aagagcagg	chr9:116170938-116171209(-)$1	271	35	44	15.1395
aggagaagg	chr9:136905054-136905284(-)$1	230	2	11	19.9069
AGGGGAAGG	chr2:219269823-219270088(+)$1	265	103	112	15.2558
AGGAGGAGG	chr19:45560936-45561235(+)$1	299	154	163	22.0000
AGAAGGAGG	chr19:5711765-5712008(-)$1	243	84	93	18.0465
AGGAUGAGG	chr4:2952781-2953051(-)$1	270	107	116	17.9302
augaggagg	chr6:44218108-44218313(+)$1	205	37	46	18.0465
AGGAGGAAG	chrX:69385719-69386033(+)$1	314	8	17	17.9302
aagaggagg	chr12:123466173-123466403(+)$1	230	111	120	18.0465
AGAAGGAGG	chr17:37360694-37360906(+)$1	212	154	163	18.0465
AGGAGGAGG	chr19:55607963-55608217(-)$1	254	131	140	22.0000
AGGAUAAGG	chr10:102107925-102108202(+)$1	277	46	55	15.8372
AGAAGGAGG	chr17:37360717-37360928(+)$1	211	131	140	18.0465
AGGAGGAGG	chr1:1575617-1575909(-)$1	292	36	45	22.0000
AGCAGGAGG	chr17:38153833-38154181(+)$1	348	251	260	17.6976
AGGAAAAGG	chr16:2011402-2011667(+)$1	265	45	54	15.6046
AGGAGGAGG	chr22:30974853-30975084(-)$1	231	154	163	22.0000
AGGAGCAGG	chr21:34143649-34143927(-)$1	278	21	30	19.0930
AGGAGGCGG	chr19:11152080-11152322(+)$1	242	163	172	17.9302
AGGAUGAGG	chr12:49231289-49231542(-)$1	253	168	177	17.9302
AGGAGGCGG	chr16:89350141-89350404(-)$1	263	116	125	17.9302
AGGAGAAGG	chr20:57466604-57466927(+)$1	323	220	229	19.9069
AGGAGGUGG	chrX:53435932-53436259(-)$1	327	103	112	17.8139
aggaggagg	chrX:70683651-70683910(+)$1	259	120	129	22.0000
AGGAGAAGG	chr5:71491419-71491684(+)$1	265	92	101	19.9069
AGGAGUAGG	chr12:113596759-113597019(-)$1	260	8	17	18.9767
AUGAGGAGG	chr2:101185341-101185584(+)$1	243	108	117	18.0465
augaggagg	chr6:44218032-44218283(+)$1	251	113	122	18.0465
AGAAGAAGG	chr19:18685851-18686117(+)$1	266	92	101	15.9534
AGGAGAAAG	chr11:65826664-65826905(+)$1	241	26	35	15.8372
AGGACUAGG	chr11:58346693-58346975(+)$1	282	29	38	14.6744
aggaggagg	chr11:62494186-62494487(-)$1	301	82	91	22.0000
AAGAGGAGG	chr22:36694864-36695098(-)$1	234	62	71	18.0465
AGGAGAAAG	chr21:47831106-47831359(+)$1	253	78	87	15.8372
AGGAGAAGG	chr16:88851443-88851673(-)$1	230	164	173	19.9069
AGGAGGAGG	chr6:159190714-159190944(-)$1	230	25	34	22.0000

#otherMatches

#Struct PSSM
zzzzzzzzz	chr12:125465173-125465482(-)$1	309	187	196	22.0000
hhh$$$$$b	chr20:57465131-57465426(+)$1	295	153	162	22.0000
IIIIIIII:	chr12:19592964-19593369(+)$1	405	18	27	17.2325
nnnndddd]	chr6:15496671-15496913(+)$1	242	43	52	17.8139
JJJJJJJJJ	chr19:11559649-11559872(+)$1	223	1	10	17.9302
IIIIIIIII	chr11:59560472-59560737(+)$1	265	249	258	17.3488
c22ccc:::	chr2:131976037-131976314(+)$1	277	109	118	15.0232
C{EEEEE{A	chr9:116170938-116171209(-)$1	271	35	44	15.1395
:::::::BB	chr9:136905054-136905284(-)$1	230	2	11	19.9069
:DDDDYYBB	chr2:219269823-219270088(+)$1	265	103	112	15.2558
:BB{EEEEE	chr19:45560936-45561235(+)$1	299	154	163	22.0000
::::::::a	chr19:5711765-5712008(-)$1	243	84	93	18.0465
DDDD{IIII	chr4:2952781-2953051(-)$1	270	107	116	17.9302
::::BBKKD	chr6:44218108-44218313(+)$1	205	37	46	18.0465
D{DDDD:::	chrX:69385719-69386033(+)$1	314	8	17	17.9302
22=======	chr12:123466173-123466403(+)$1	230	111	120	18.0465
????HHHHH	chr17:37360694-37360906(+)$1	212	154	163	18.0465
CCC{FFFFF	chr19:55607963-55608217(-)$1	254	131	140	22.0000
qbb::::bb	chr10:102107925-102108202(+)$1	277	46	55	15.8372
????HHHHH	chr17:37360717-37360928(+)$1	211	131	140	18.0465
III{DDDDd	chr1:1575617-1575909(-)$1	292	36	45	22.0000
ddddddd[a	chr17:38153833-38154181(+)$1	348	251	260	17.6976
eeeeennnn	chr16:2011402-2011667(+)$1	265	45	54	15.6046
B}GGGGGGG	chr22:30974853-30975084(-)$1	231	154	163	22.0000
:::eeeeeb	chr21:34143649-34143927(-)$1	278	21	30	19.0930
YYDDDDYYC	chr19:11152080-11152322(+)$1	242	163	172	17.9302
@JJJJJJJJ	chr12:49231289-49231542(-)$1	253	168	177	17.9302
tttttbb]a	chr16:89350141-89350404(-)$1	263	116	125	17.9302
4bb4444cc	chr20:57466604-57466927(+)$1	323	220	229	19.9069
ffdddd:GG	chrX:53435932-53436259(-)$1	327	103	112	17.8139
:HHHHHHHH	chrX:70683651-70683910(+)$1	259	120	129	22.0000
FFFFFFFFF	chr5:71491419-71491684(+)$1	265	92	101	19.9069
EEEEbb[ee	chr12:113596759-113597019(-)$1	260	8	17	18.9767
DD{JJJJJJ	chr2:101185341-101185584(+)$1	243	108	117	18.0465
II{CCC{BB	chr6:44218032-44218283(+)$1	251	113	122	18.0465
CKKCCC{BB	chr19:18685851-18686117(+)$1	266	92	101	15.9534
eeee::EEE	chr11:65826664-65826905(+)$1	241	26	35	15.8372
dmmmmdddd	chr11:58346693-58346975(+)$1	282	29	38	14.6744
qqqqqqqa2	chr11:62494186-62494487(-)$1	301	82	91	22.0000
##ccc!!bb	chr22:36694864-36695098(-)$1	234	62	71	18.0465
"dddd####	chr21:47831106-47831359(+)$1	253	78	87	15.8372
:::::::::	chr16:88851443-88851673(-)$1	230	164	173	19.9069
a[a[a!!dd	chr6:159190714-159190944(-)$1	230	25	34	22.0000

#DB
.........	chr12:125465173-125465482(-)$1	1	187	196	22.0000
(((.....(	chr20:57465131-57465426(+)$1	1	153	162	22.0000
((((((((.	chr12:19592964-19593369(+)$1	1	18	27	17.2325
....)))).	chr6:15496671-15496913(+)$1	1	43	52	17.8139
(((((((((	chr19:11559649-11559872(+)$1	1	1	10	17.9302
)))))))))	chr11:59560472-59560737(+)$1	1	249	258	17.3488
)..)))...	chr2:131976037-131976314(+)$1	1	109	118	15.0232
(.(((((.(	chr9:116170938-116171209(-)$1	1	35	44	15.1395
.......((	chr9:136905054-136905284(-)$1	1	2	11	19.9069
.))))..))	chr2:219269823-219270088(+)$1	1	103	112	15.2558
.((.(((((	chr19:45560936-45561235(+)$1	1	154	163	22.0000
........(	chr19:5711765-5712008(-)$1	1	84	93	18.0465
((((.((((	chr4:2952781-2953051(-)$1	1	107	116	17.9302
....((..(	chr6:44218108-44218313(+)$1	1	37	46	18.0465
(.((((...	chrX:69385719-69386033(+)$1	1	8	17	17.9302
..)))))))	chr12:123466173-123466403(+)$1	1	111	120	18.0465
....)))))	chr17:37360694-37360906(+)$1	1	154	163	18.0465
(((.(((((	chr19:55607963-55608217(-)$1	1	131	140	22.0000
.))....((	chr10:102107925-102108202(+)$1	1	46	55	15.8372
....)))))	chr17:37360717-37360928(+)$1	1	131	140	18.0465
(((.(((((	chr1:1575617-1575909(-)$1	1	36	45	22.0000
(((((((.(	chr17:38153833-38154181(+)$1	1	251	260	17.6976
(((((....	chr16:2011402-2011667(+)$1	1	45	54	15.6046
).)))))))	chr22:30974853-30975084(-)$1	1	154	163	22.0000
...((((((	chr21:34143649-34143927(-)$1	1	21	30	19.0930
..))))..)	chr19:11152080-11152322(+)$1	1	163	172	17.9302
.))))))))	chr12:49231289-49231542(-)$1	1	168	177	17.9302
.....)).)	chr16:89350141-89350404(-)$1	1	116	125	17.9302
.))....))	chr20:57466604-57466927(+)$1	1	220	229	19.9069
)))))).((	chrX:53435932-53436259(-)$1	1	103	112	17.8139
.((((((((	chrX:70683651-70683910(+)$1	1	120	129	22.0000
(((((((((	chr5:71491419-71491684(+)$1	1	92	101	19.9069
((((((.((	chr12:113596759-113597019(-)$1	1	8	17	18.9767
((.((((((	chr2:101185341-101185584(+)$1	1	108	117	18.0465
((.(((.((	chr6:44218032-44218283(+)$1	1	113	122	18.0465
(..(((.((	chr19:18685851-18686117(+)$1	1	92	101	15.9534
))))..(((	chr11:65826664-65826905(+)$1	1	26	35	15.8372
(....))))	chr11:58346693-58346975(+)$1	1	29	38	14.6744
.......).	chr11:62494186-62494487(-)$1	1	82	91	22.0000
..(((..((	chr22:36694864-36695098(-)$1	1	62	71	18.0465
.((((....	chr21:47831106-47831359(+)$1	1	78	87	15.8372
.........	chr16:88851443-88851673(-)$1	1	164	173	19.9069
(.(.(..((	chr6:159190714-159190944(-)$1	1	25	34	22.0000

#PSSM
A : 0.81	a : 0.18	
G : 0.76	g : 0.09	a : 0.04	u : 0.04	U : 0.02	A : 0.02	
G : 0.69	g : 0.18	A : 0.09	C : 0.02	
A : 0.76	a : 0.18	U : 0.02	G : 0.02	
G : 0.69	g : 0.18	U : 0.06	A : 0.02	C : 0.02	
G : 0.51	A : 0.20	g : 0.13	C : 0.04	U : 0.04	c : 0.02	a : 0.02	
A : 0.69	a : 0.18	C : 0.06	U : 0.04	
G : 0.72	g : 0.18	A : 0.09	
G : 0.79	g : 0.18	A : 0.02	

#score	794.7209302325582
#seq	43
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_transcript_m3_run2.nuc.txt

#NT
GCAGCUCAGCAAAgugugugugugugucugugucuguguggugugucucugugucuuguguggugugucucuguggugugucugucuuguguguuguguguggaugugugugugucuguguggugugucugucuuguguguuguguguguuguaugugugucucuggugugucugucuugugugucgugugugucuguggugugucucuguguguagugugucucuguguguggugugucucuguguguguggugugucucuguggugugucugucuuguguguugugucugcaugucugcauggugcgugugucucugugucugugucuguguguuguguggcguguguguUGGUGGGGUGUGUGGAAUCACGUGGUACCCAA	chr21:46894149-46894546(+)$1	397	2	386	637.0000

#otherMatches

#Struct PSSM
a!!ffffff[bb^^^^^^^^^^^^^^^^^^^^^^^bb]ffffff]a]dddd]ccc]eeeeeGGGGGGGhhhhhhhh####gggggggnnnnnggggggg4444hhhhhhhh:JJJJJJJJJJJ{CCC:::::::::::::::::::::::::::::::::::::::::ddddqqqqqqqqdddd:::::iiiiiiiii[bbrrrrrrrrrbb]iiiiiiiii::::::::::::::CCC}JJJJJJJJJJJ______GGGGGGG::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::	chr2:218670261-218670664(-)$1	403	17	401	637.0000
ffffa[bb[bb[bb[a^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^a]bb]bb]bb]a]ffffff::::::::::::::ddddqqqqqqqqdddd::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::bb!!a[eeeee[ccc[ccc[ccc$$$$$dddd$$$$$hhhhhhhh[bb[ccc[a[iiiiiiiii[a^^^^^^^^^^^^^^^^^^^^^^a]iiiiiiiii22a]ccc]bbhhhhhhhh22ddddccccccccc]	chr21:46894149-46894546(+)$1	397	2	386	637.0000

#DB
(..((((((.((.......................)).)))))).).)))).))).)))))(((((((((((((((....(((((((.....)))))))....)))))))).(((((((((((.(((.........................................((((........)))).....(((((((((.((.........)).)))))))))..............))).)))))))))))......)))))))........................................................................................................................	chr2:218670261-218670664(-)$1	1	17	401	637.0000
(((((.((.((.((.(....................................................).)).)).)).).))))))..............((((........))))......................................................................................................................................((..(.(((((.(((.(((.(((.....((((.....((((((((.((.(((.(.(((((((((.(......................).)))))))))..).))).))))))))))..))))))))))))).	chr21:46894149-46894546(+)$1	1	2	386	637.0000

#PSSM
G : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
a : 0.50	c : 0.50	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
u : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
c : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 0.50	c : 0.50	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 1.00	
u : 0.50	g : 0.50	
c : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
c : 0.50	u : 0.50	
a : 0.50	g : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 1.00	
u : 1.00	
u : 0.50	g : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
a : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 0.50	g : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
g : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
a : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	c : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	c : 0.50	
g : 0.50	u : 0.50	
c : 0.50	g : 0.50	
a : 0.50	u : 0.50	
g : 1.00	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	a : 0.50	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
c : 0.50	u : 0.50	
a : 0.50	g : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
a : 0.50	g : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
a : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
a : 0.50	c : 0.50	
u : 1.00	
a : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	c : 0.50	
u : 0.50	a : 0.50	
g : 0.50	u : 0.50	
a : 0.50	g : 0.50	
u : 1.00	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	c : 0.50	
u : 0.50	a : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
a : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 0.50	c : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
g : 0.50	u : 0.50	
u : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
u : 1.00	
g : 1.00	
u : 0.50	g : 0.50	
g : 0.50	c : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 1.00	
u : 1.00	
g : 0.50	U : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
u : 0.50	G : 0.50	
g : 0.50	U : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
g : 0.50	A : 0.50	
u : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	A : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	A : 0.50	
u : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
u : 0.50	A : 0.50	
g : 0.50	A : 0.50	

#score	1274.0
#seq	2
#width	384
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_transcript_m3_run2.nuc.txt

#NT
UUUUUU	chr17:29704089-29704348(+)$1	259	105	111	18.0000
UUUUUU	chr3:182636164-182636448(+)$1	284	81	87	18.0000
UUUUUU	chr15:96881698-96881965(+)$1	267	211	217	18.0000
UUUUUU	chr11:10785147-10785434(+)$1	287	20	26	18.0000
UUUUUU	chr13:42896818-42897092(+)$1	274	95	101	18.0000
UUUUUU	chr7:104754259-104754488(+)$1	229	188	194	18.0000
UUUUUU	chr17:74730161-74730385(-)$1	224	201	207	18.0000
UUUUUU	chr2:169732514-169732767(-)$1	253	69	75	18.0000
UUUUUU	chr10:81074212-81074453(+)$1	241	46	52	18.0000
UUUUUU	chr2:55517254-55517552(-)$1	298	69	75	18.0000
UUUUUU	chr10:70550890-70551195(+)$1	305	47	53	18.0000
UUUUUU	chr1:203822949-203823205(+)$1	256	163	169	18.0000
UUUUUU	chr10:103922060-103922297(+)$1	237	196	202	18.0000
UUUUUU	chr15:44063587-44063839(+)$1	252	103	109	18.0000
UUUUUU	chr5:96369832-96370084(+)$1	252	38	44	18.0000
UUUUUU	chr15:59387420-59387667(+)$1	247	25	31	18.0000
UUUUUU	chr17:28795501-28795775(+)$1	274	145	151	18.0000
UUUUUU	chr1:31404917-31405190(-)$1	273	151	157	18.0000
UUUUUU	chr1:113455057-113455280(-)$1	223	140	146	18.0000
UUUUUU	chr15:59951273-59951558(-)$1	285	170	176	18.0000
UUUUUU	chr10:94213728-94214019(-)$1	291	8	14	18.0000
UUUUUU	chr3:14984454-14984708(-)$1	254	206	212	18.0000
UUUUUU	chr3:193415106-193415350(+)$1	244	99	105	18.0000
UUUUUU	chr1:91382123-91382440(-)$1	317	139	145	18.0000
UUUUUU	chr15:83673818-83674056(-)$1	238	42	48	18.0000
UUUUUU	chr4:144474828-144475114(+)$1	286	77	83	18.0000
UUUUUU	chr5:132332735-132333038(-)$1	303	5	11	18.0000
UUUUUU	chr11:118886341-118886565(-)$1	224	84	90	18.0000
UUUUUU	chr12:57392637-57392890(-)$1	253	160	166	18.0000
UUUUUU	chr12:51142166-51142417(+)$1	251	57	63	18.0000
UUUUUU	chr5:112930631-112930870(+)$1	239	132	138	18.0000
UUUUUU	chr1:186286511-186286746(-)$1	235	222	228	18.0000
UUUUUU	chrX:48760877-48761157(-)$1	280	187	193	18.0000
uuuuuu	chr17:65334974-65335234(-)$1	260	249	255	18.0000
UUUUUU	chr6:129899314-129899546(-)$1	232	179	185	18.0000
UUUUUU	chr18:9954264-9954504(+)$1	240	45	51	18.0000
UUUUUU	chr3:3191893-3192163(-)$1	270	196	202	18.0000
uuuuuu	chr19:11244321-11244567(+)$1	246	222	228	18.0000
UUUUUU	chr11:61556561-61556809(-)$1	248	146	152	18.0000
UUUUUU	chr19:48885748-48885990(-)$1	242	18	24	18.0000
UUUUUU	chr9:102731580-102731852(+)$1	272	191	197	18.0000
UUUUUU	chr12:116397145-116397461(-)$1	316	86	92	18.0000
UUUUUU	chr6:26523885-26524112(+)$1	227	127	133	18.0000
UUUUUU	chr12:51138799-51139061(+)$1	262	87	93	18.0000
UUUUUU	chr2:109300936-109301207(+)$1	271	74	80	18.0000
UUUUUU	chr3:5026557-5026812(+)$1	255	161	167	18.0000
UUUUUU	chr2:172584714-172584926(+)$1	212	82	88	18.0000
UUUUUU	chr6:89322119-89322405(-)$1	286	87	93	18.0000
UUUUUU	chr19:1107629-1107873(-)$1	244	206	212	18.0000
UUUUUU	chr15:64977200-64977461(+)$1	261	158	164	18.0000

#otherMatches

#Struct PSSM
:=====	chr17:55198433-55198678(+)$1	245	198	204	18.0000
::::::	chr17:29704089-29704348(+)$1	259	105	111	18.0000
b!!bb[	chr3:182636164-182636448(+)$1	284	81	87	18.0000
iiiiii	chr15:96881698-96881965(+)$1	267	211	217	18.0000
JJJJ::	chr11:10785147-10785434(+)$1	287	20	26	18.0000
eepppp	chr13:42896818-42897092(+)$1	274	95	101	18.0000
qqqqcc	chr7:104754259-104754488(+)$1	229	188	194	18.0000
4444cc	chr17:74730161-74730385(-)$1	224	201	207	18.0000
iiiiii	chr2:169732514-169732767(-)$1	253	69	75	18.0000
::::::	chr10:81074212-81074453(+)$1	241	46	52	18.0000
LLLFFF	chr2:55517254-55517552(-)$1	298	69	75	18.0000
::eeee	chr10:70550890-70551195(+)$1	305	47	53	18.0000
fff%%%	chr1:203822949-203823205(+)$1	256	163	169	18.0000
fffffl	chr10:103922060-103922297(+)$1	237	196	202	18.0000
wwwwww	chr15:44063587-44063839(+)$1	252	103	109	18.0000
wwwwww	chr5:96369832-96370084(+)$1	252	38	44	18.0000
IIII:I	chr15:59387420-59387667(+)$1	247	25	31	18.0000
gggrrr	chr17:28795501-28795775(+)$1	274	145	151	18.0000
ggg:::	chr1:31404917-31405190(-)$1	273	151	157	18.0000
$fffff	chr1:113455057-113455280(-)$1	223	140	146	18.0000
qqqa]g	chr15:59951273-59951558(-)$1	285	170	176	18.0000
===^^^	chr10:94213728-94214019(-)$1	291	8	14	18.0000
CCZZZD	chr3:14984454-14984708(-)$1	254	206	212	18.0000
::::::	chr3:193415106-193415350(+)$1	244	99	105	18.0000
[ggggg	chr1:91382123-91382440(-)$1	317	139	145	18.0000
iiiiii	chr15:83673818-83674056(-)$1	238	42	48	18.0000
eee[ff	chr4:144474828-144475114(+)$1	286	77	83	18.0000
======	chr5:132332735-132333038(-)$1	303	5	11	18.0000
cc[fff	chr11:118886341-118886565(-)$1	224	84	90	18.0000
ggg999	chr12:57392637-57392890(-)$1	253	160	166	18.0000
uiiiii	chr12:51142166-51142417(+)$1	251	57	63	18.0000
frrrrr	chr5:112930631-112930870(+)$1	239	132	138	18.0000
JJJJJJ	chr1:186286511-186286746(-)$1	235	222	228	18.0000
i%%%%%	chrX:48760877-48761157(-)$1	280	187	193	18.0000
JJJJJJ	chr17:65334974-65335234(-)$1	260	249	255	18.0000
!bbqqq	chr6:129899314-129899546(-)$1	232	179	185	18.0000
cooooo	chr18:9954264-9954504(+)$1	240	45	51	18.0000
=+++++	chr3:3191893-3192163(-)$1	270	196	202	18.0000
G:::::	chr19:11244321-11244567(+)$1	246	222	228	18.0000
rrrrre	chr11:61556561-61556809(-)$1	248	146	152	18.0000
===ooo	chr19:48885748-48885990(-)$1	242	18	24	18.0000
:::::b	chr9:102731580-102731852(+)$1	272	191	197	18.0000
::::::	chr12:116397145-116397461(-)$1	316	86	92	18.0000
>>>>>>	chr6:26523885-26524112(+)$1	227	127	133	18.0000
JJJJJJ	chr12:51138799-51139061(+)$1	262	87	93	18.0000
ddddgg	chr2:109300936-109301207(+)$1	271	74	80	18.0000
oooiii	chr3:5026557-5026812(+)$1	255	161	167	18.0000
llffff	chr2:172584714-172584926(+)$1	212	82	88	18.0000
======	chr6:89322119-89322405(-)$1	286	87	93	18.0000
ggbb]=	chr19:1107629-1107873(-)$1	244	206	212	18.0000
IIIIII	chr15:64977200-64977461(+)$1	261	158	164	18.0000

#DB
.(((((	chr17:55198433-55198678(+)$1	1	198	204	18.0000
......	chr17:29704089-29704348(+)$1	1	105	111	18.0000
(..((.	chr3:182636164-182636448(+)$1	1	81	87	18.0000
))))))	chr15:96881698-96881965(+)$1	1	211	217	18.0000
((((..	chr11:10785147-10785434(+)$1	1	20	26	18.0000
((....	chr13:42896818-42897092(+)$1	1	95	101	18.0000
....))	chr7:104754259-104754488(+)$1	1	188	194	18.0000
....))	chr17:74730161-74730385(-)$1	1	201	207	18.0000
))))))	chr2:169732514-169732767(-)$1	1	69	75	18.0000
......	chr10:81074212-81074453(+)$1	1	46	52	18.0000
...(((	chr2:55517254-55517552(-)$1	1	69	75	18.0000
..((((	chr10:70550890-70551195(+)$1	1	47	53	18.0000
(((...	chr1:203822949-203823205(+)$1	1	163	169	18.0000
(((((.	chr10:103922060-103922297(+)$1	1	196	202	18.0000
......	chr15:44063587-44063839(+)$1	1	103	109	18.0000
......	chr5:96369832-96370084(+)$1	1	38	44	18.0000
((((.(	chr15:59387420-59387667(+)$1	1	25	31	18.0000
(((...	chr17:28795501-28795775(+)$1	1	145	151	18.0000
)))...	chr1:31404917-31405190(-)$1	1	151	157	18.0000
.(((((	chr1:113455057-113455280(-)$1	1	140	146	18.0000
...).)	chr15:59951273-59951558(-)$1	1	170	176	18.0000
(((...	chr10:94213728-94214019(-)$1	1	8	14	18.0000
))...)	chr3:14984454-14984708(-)$1	1	206	212	18.0000
......	chr3:193415106-193415350(+)$1	1	99	105	18.0000
.(((((	chr1:91382123-91382440(-)$1	1	139	145	18.0000
((((((	chr15:83673818-83674056(-)$1	1	42	48	18.0000
(((.((	chr4:144474828-144475114(+)$1	1	77	83	18.0000
((((((	chr5:132332735-132333038(-)$1	1	5	11	18.0000
((.(((	chr11:118886341-118886565(-)$1	1	84	90	18.0000
)))...	chr12:57392637-57392890(-)$1	1	160	166	18.0000
.)))))	chr12:51142166-51142417(+)$1	1	57	63	18.0000
(.....	chr5:112930631-112930870(+)$1	1	132	138	18.0000
))))))	chr1:186286511-186286746(-)$1	1	222	228	18.0000
(.....	chrX:48760877-48761157(-)$1	1	187	193	18.0000
))))))	chr17:65334974-65335234(-)$1	1	249	255	18.0000
.((...	chr6:129899314-129899546(-)$1	1	179	185	18.0000
(.....	chr18:9954264-9954504(+)$1	1	45	51	18.0000
(.....	chr3:3191893-3192163(-)$1	1	196	202	18.0000
).....	chr19:11244321-11244567(+)$1	1	222	228	18.0000
.....)	chr11:61556561-61556809(-)$1	1	146	152	18.0000
(((...	chr19:48885748-48885990(-)$1	1	18	24	18.0000
.....(	chr9:102731580-102731852(+)$1	1	191	197	18.0000
......	chr12:116397145-116397461(-)$1	1	86	92	18.0000
......	chr6:26523885-26524112(+)$1	1	127	133	18.0000
))))))	chr12:51138799-51139061(+)$1	1	87	93	18.0000
))))))	chr2:109300936-109301207(+)$1	1	74	80	18.0000
...)))	chr3:5026557-5026812(+)$1	1	161	167	18.0000
..))))	chr2:172584714-172584926(+)$1	1	82	88	18.0000
((((((	chr6:89322119-89322405(-)$1	1	87	93	18.0000
)))).)	chr19:1107629-1107873(-)$1	1	206	212	18.0000
((((((	chr15:64977200-64977461(+)$1	1	158	164	18.0000

#PSSM
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	

#score	918.0000000000001
#seq	51
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_CDS_m1_run1.nuc.txt

#NT
GGGGCGGGGGGCGC	chr1:1256375-1256627(-)$1	252	109	123	20.1034
GGGCCUGGGAAGGA	chr21:47571550-47571812(-)$1	262	28	42	16.3965
GGGGCUGGGAGGCA	chr7:1481755-1482016(-)$1	261	197	211	19.6724
GGCGCGGGGAGGCC	chr11:61595775-61596063(+)$1	288	40	54	18.6379
GGGGCGGGGGUGGG	chr19:14266798-14267041(+)$1	243	74	88	22.1724
GGCGCGGGGUGGGA	chr5:180651179-180651447(+)$1	268	54	68	21.3103
GGUGCGGGGUGGGG	chr11:558788-559063(+)$1	275	91	105	21.9999
ggggcggggcgggg	chr17:17726760-17727016(-)$1	256	25	39	25.7931
CGGGCGGGGAGGCG	chr4:78740290-78740543(-)$1	253	205	219	20.1034
AGGGCGGGGUUGGG	chr11:558487-558771(+)$1	284	87	101	18.7241
GCAGCGGGGAGGGU	chrX:152957471-152957749(+)$1	278	107	121	17.6034
gggguggggggggu	chr2:54197711-54197953(-)$1	242	6	20	21.6551
CGGACGGGGCGGGC	chr11:65343663-65343902(+)$1	239	1	15	17.4310
GGAGCCAGGAGGGG	chr19:1104607-1104921(+)$1	314	96	110	16.0517
AGGGAGUGGAGGGG	chrX:131351181-131351437(-)$1	256	167	181	16.9999
ggggcggcgggggg	chr19:42788681-42788957(+)$1	276	30	44	20.9655
GGGGCUGGGAGGGU	chr19:18653594-18653872(-)$1	278	122	136	22.6896
UGGCCGAGGAGGGA	chr2:27255808-27256090(+)$1	282	49	63	16.4827
GGGGAGGGGAGGGU	chrX:152938605-152938853(-)$1	248	192	206	23.2931
GGGGCGGGGCUUGA	chr19:18547775-18548036(-)$1	261	27	41	16.9137
ggggcugggguggc	chr22:50017039-50017291(-)$1	252	181	195	17.6896
UGGGGGGGGUGGGG	chr19:14267297-14267578(+)$1	281	80	94	20.0172
GGGGCGGGCGGGGG	chr16:599475-599739(+)$1	264	100	114	21.1379
GGGGCGGGGCGGGA	chr19:49843460-49843688(-)$1	228	71	85	25.1034
GGGGGUGGGAGGGA	chr19:55998138-55998397(+)$1	259	85	99	20.7931
ggggcgggcggagg	chr16:68002333-68002597(-)$1	264	5	19	16.6551
GGGUUGGGGAAGGU	chr19:14273428-14273683(+)$1	255	105	119	15.9655
GGUGCGGGGAGGAA	chr2:172379079-172379318(+)$1	239	189	203	18.8965
ggggcgcggagggg	chr17:47841318-47841572(-)$1	254	170	184	23.5517
UGGGAGAGGAGGGG	chr11:199795-200072(-)$1	277	130	144	17.6896
agggcggggagggg	chr3:185542640-185542942(-)$1	302	87	101	23.8965
GGGCCAgggugggg	chr19:50985391-50985645(+)$1	254	73	87	18.8965
GGGCCGGGGUGGGC	chr19:49842544-49842801(-)$1	257	7	21	21.5689
gggccggggcgggc	chr4:129208544-129208810(-)$1	266	112	126	21.3965
GGGUCGAGGUGGGA	chr12:93966768-93967036(+)$1	268	111	125	17.8620
cgugcgcggagggg	chrX:152939301-152939547(-)$1	246	222	236	15.9655
GCGGAGGGGUGGGA	chr9:139235409-139235659(+)$1	250	101	115	18.0344
GGGGCGGGGCAGUC	chr16:3108774-3109051(-)$1	277	109	123	16.7413
gcggcggggaggcc	chr10:101379901-101380179(-)$1	278	211	225	18.1206
UGGGUGGGGAGGCA	chr16:90015672-90015984(+)$1	312	111	125	17.0862
gggccggggcgggg	chr12:49318765-49319090(-)$1	325	276	290	22.5172
ggggcugggugggc	chr9:140323142-140323446(+)$1	304	90	104	21.4827
ggcgcggggcgggc	chr22:19418893-19419223(-)$1	330	99	113	20.7068
GGGGGCGGGAGGGG	chr19:18548348-18548616(-)$1	268	210	224	21.1379
GGGGCGGGGAGGGG	chr10:103588853-103589129(-)$1	276	84	98	27.5172
GGGGUGGGGGUGGG	chr7:104753062-104753345(-)$1	283	95	109	19.4999
gggguggggguggg	chr15:38776586-38776843(+)$1	257	23	37	19.4999
UGGGCGGGGAGGAG	chr11:2005455-2005814(+)$1	359	154	168	20.2758
GGAGCGGGGCGGGC	chr2:232575105-232575341(+)$1	236	90	104	20.7068
GGGGGAGGGAGGGA	chr11:65620308-65620570(-)$1	262	77	91	20.3620
ugggaggggagaga	chr15:68491918-68492205(-)$1	287	53	67	16.3103
GGGAGGAGGAGGGU	chr14:24901238-24901545(+)$1	307	170	184	15.9655
GGGGUGGGGAGGAU	chr5:180651108-180651379(+)$1	271	33	47	19.4137
GGGCCUGGGAGGGA	chr19:49841161-49841433(-)$1	272	17	31	20.1896
gggauggggaagga	chr16:3107347-3107633(-)$1	286	84	98	16.7413
UGGGACGGGAGGGG	chr11:197859-198150(-)$1	291	263	277	17.7758
GGGGGGCGGUGGGA	chr19:10406921-10407208(+)$1	287	30	44	18.6379

#otherMatches

#Struct PSSM
BB{DDDDEEEEE{C	chr16:447729-447989(+)$1	260	0	14	19.6724
iiiiiiiicccccc	chr1:1256375-1256627(-)$1	252	109	123	20.1034
ccc===========	chr21:47571550-47571812(-)$1	262	28	42	16.3965
a[ggggggg[bb!!	chr7:1481755-1482016(-)$1	261	197	211	19.6724
fff$$$$$bb[ccc	chr11:61595775-61596063(+)$1	288	40	54	18.6379
BLLLA:::dddd!!	chr19:14266798-14267041(+)$1	243	74	88	22.1724
22cccfffffflll	chr5:180651179-180651447(+)$1	268	54	68	21.3103
eeee]dddd:ffff	chr11:558788-559063(+)$1	275	91	105	21.9999
eee[bbeeeee!!d	chr17:17726760-17727016(-)$1	256	25	39	25.7931
eeeee[annnnna]	chr4:78740290-78740543(-)$1	253	205	219	20.1034
""iiiiiiiii"""	chr11:558487-558771(+)$1	284	87	101	18.7241
DDDD}A}GGGGGGG	chrX:152957471-152957749(+)$1	278	107	121	17.6034
:DDDD:eeeeemmm	chr2:54197711-54197953(-)$1	242	6	20	21.6551
FFFFFEEEEE{CCC	chr11:65343663-65343902(+)$1	239	1	15	17.4310
GG::::::::CCCE	chr19:1104607-1104921(+)$1	314	96	110	16.0517
YJJJJJJJJJJJJ}	chrX:131351181-131351437(-)$1	256	167	181	16.9999
BBKKEEEEE{HHHH	chr19:42788681-42788957(+)$1	276	30	44	20.9655
a]a]ccc]a22hhh	chr19:18653594-18653872(-)$1	278	122	136	22.6896
fffffsssssssss	chr2:27255808-27256090(+)$1	282	49	63	16.4827
==::::FFFFFF}B	chrX:152938605-152938853(-)$1	248	192	206	23.2931
bbffffff"""bb[	chr19:18547775-18548036(-)$1	261	27	41	16.9137
3dddd22ffffff2	chr22:50017039-50017291(-)$1	252	181	195	17.6896
dddd4444dddd:F	chr19:14267297-14267578(+)$1	281	80	94	20.0172
eeeeecccgggggg	chr16:599475-599739(+)$1	264	100	114	21.1379
cc!!bb[dddd"""	chr19:49843460-49843688(-)$1	228	71	85	25.1034
eeee]bb]ccc:::	chr19:55998138-55998397(+)$1	259	85	99	20.7931
!a[bb!!bbppppp	chr16:68002333-68002597(-)$1	264	5	19	16.6551
ABB{CCC{BB{HHH	chr19:14273428-14273683(+)$1	255	105	119	15.9655
hhhhh]bb::::::	chr2:172379079-172379318(+)$1	239	189	203	18.8965
IIcccdddd!!bb[	chr17:47841318-47841572(-)$1	254	170	184	23.5517
g]bb::iiiiiiii	chr11:199795-200072(-)$1	277	130	144	17.6896
FFF{BB{BB{BBBB	chr3:185542640-185542942(-)$1	302	87	101	23.8965
dDDDD{CCCFFFFF	chr19:50985391-50985645(+)$1	254	73	87	18.8965
ddddhhhhhhhhbb	chr19:49842544-49842801(-)$1	257	7	21	21.5689
""cccooooooccc	chr4:129208544-129208810(-)$1	266	112	126	21.3965
[dddd%%%%%%hhh	chr12:93966768-93967036(+)$1	268	111	125	17.8620
CC}BB}CCCYYCCC	chrX:152939301-152939547(-)$1	246	222	236	15.9655
eeee::HHHHHHHH	chr9:139235409-139235659(+)$1	250	101	115	18.0344
:dddd[dddd[ddd	chr16:3108774-3109051(-)$1	277	109	123	16.7413
bb::EEEEEYYCCC	chr10:101379901-101380179(-)$1	278	211	225	18.1206
d!!eeeee!!eeee	chr16:90015672-90015984(+)$1	312	111	125	17.0862
ddddccc]cccbb2	chr12:49318765-49319090(-)$1	325	276	290	22.5172
gggggg[dddd$$$	chr9:140323142-140323446(+)$1	304	90	104	21.4827
{DDDD{DDDD::cc	chr22:19418893-19419223(-)$1	330	99	113	20.7068
ffff]bbBB}HHHH	chr19:18548348-18548616(-)$1	268	210	224	21.1379
g22bbJJJJJJJJJ	chr10:103588853-103589129(-)$1	276	84	98	27.5172
a22eeeee:dddd&	chr7:104753062-104753345(-)$1	283	95	109	19.4999
::::::::ccc[ao	chr15:38776586-38776843(+)$1	257	23	37	19.4999
zgggggggeeeee]	chr11:2005455-2005814(+)$1	359	154	168	20.2758
c]abb:EEEEEKKD	chr2:232575105-232575341(+)$1	236	90	104	20.7068
ffffggggggg[cc	chr11:65620308-65620570(-)$1	262	77	91	20.3620
etttttttttttee	chr15:68491918-68492205(-)$1	287	53	67	16.3103
hhhhhh"""a[ccc	chr14:24901238-24901545(+)$1	307	170	184	15.9655
BBKKBB::::::::	chr5:180651108-180651379(+)$1	271	33	47	19.4137
FDDDD{GGGGGGG{	chr19:49841161-49841433(-)$1	272	17	31	20.1896
llccc]bb4444bb	chr16:3107347-3107633(-)$1	286	84	98	16.7413
HHH|||||||FFFF	chr11:197859-198150(-)$1	291	263	277	17.7758
hhhhhhhsssssss	chr19:10406921-10407208(+)$1	287	30	44	18.6379

#DB
((.(((((((((.(	chr16:447729-447989(+)$1	1	0	14	19.6724
((((((((((((((	chr1:1256375-1256627(-)$1	1	109	123	20.1034
((((((((((((((	chr21:47571550-47571812(-)$1	1	28	42	16.3965
(.(((((((.((..	chr7:1481755-1482016(-)$1	1	197	211	19.6724
(((.....((.(((	chr11:61595775-61596063(+)$1	1	40	54	18.6379
(...(...((((..	chr19:14266798-14267041(+)$1	1	74	88	22.1724
..)))((((((...	chr5:180651179-180651447(+)$1	1	54	68	21.3103
)))).)))).((((	chr11:558788-559063(+)$1	1	91	105	21.9999
(((.(((((((..(	chr17:17726760-17727016(-)$1	1	25	39	25.7931
(((((.(.....).	chr4:78740290-78740543(-)$1	1	205	219	20.1034
..(((((((((...	chr11:558487-558771(+)$1	1	87	101	18.7241
)))).).)))))))	chrX:152957471-152957749(+)$1	1	107	121	17.6034
.((((.(((((...	chr2:54197711-54197953(-)$1	1	6	20	21.6551
((((((((((.(((	chr11:65343663-65343902(+)$1	1	1	15	17.4310
))........((((	chr19:1104607-1104921(+)$1	1	96	110	16.0517
.)))))))))))).	chrX:131351181-131351437(-)$1	1	167	181	16.9999
((..(((((.((((	chr19:42788681-42788957(+)$1	1	30	44	20.9655
).).))).)..)))	chr19:18653594-18653872(-)$1	1	122	136	22.6896
(((((.........	chr2:27255808-27256090(+)$1	1	49	63	16.4827
))....)))))).)	chrX:152938605-152938853(-)$1	1	192	206	23.2931
((((((((...((.	chr19:18547775-18548036(-)$1	1	27	41	16.9137
.))))..)))))).	chr22:50017039-50017291(-)$1	1	181	195	17.6896
))))....)))).(	chr19:14267297-14267578(+)$1	1	80	94	20.0172
))))))))))))))	chr16:599475-599739(+)$1	1	100	114	21.1379
((..((.((((...	chr19:49843460-49843688(-)$1	1	71	85	25.1034
)))).)).)))...	chr19:55998138-55998397(+)$1	1	85	99	20.7931
.(.((..((.....	chr16:68002333-68002597(-)$1	1	5	19	16.6551
(((.(((.((.(((	chr19:14273428-14273683(+)$1	1	105	119	15.9655
))))).))......	chr2:172379079-172379318(+)$1	1	189	203	18.8965
))(((((((..((.	chr17:47841318-47841572(-)$1	1	170	184	23.5517
).))..((((((((	chr11:199795-200072(-)$1	1	130	144	17.6896
(((.((.((.((((	chr3:185542640-185542942(-)$1	1	87	101	23.8965
)((((.((((((((	chr19:50985391-50985645(+)$1	1	73	87	18.8965
((((((((((((((	chr19:49842544-49842801(-)$1	1	7	21	21.5689
..(((......)))	chr4:129208544-129208810(-)$1	1	112	126	21.3965
.((((......(((	chr12:93966768-93967036(+)$1	1	111	125	17.8620
)).)).)))..)))	chrX:152939301-152939547(-)$1	1	222	236	15.9655
))))..((((((((	chr9:139235409-139235659(+)$1	1	101	115	18.0344
.((((.((((.(((	chr16:3108774-3109051(-)$1	1	109	123	16.7413
))..)))))..)))	chr10:101379901-101380179(-)$1	1	211	225	18.1206
(..(((((..((((	chr16:90015672-90015984(+)$1	1	111	125	17.0862
))))))).))))).	chr12:49318765-49319090(-)$1	1	276	290	22.5172
((((((.((((...	chr9:140323142-140323446(+)$1	1	90	104	21.4827
.((((.((((..((	chr22:19418893-19419223(-)$1	1	99	113	20.7068
)))).)))).))))	chr19:18548348-18548616(-)$1	1	210	224	21.1379
)..)))))))))))	chr10:103588853-103589129(-)$1	1	84	98	27.5172
)..))))).((((.	chr7:104753062-104753345(-)$1	1	95	109	19.4999
........(((.(.	chr15:38776586-38776843(+)$1	1	23	37	19.4999
.)))))))))))).	chr11:2005455-2005814(+)$1	1	154	168	20.2758
).))).(((((..(	chr2:232575105-232575341(+)$1	1	90	104	20.7068
))))(((((((.((	chr11:65620308-65620570(-)$1	1	77	91	20.3620
(...........))	chr15:68491918-68492205(-)$1	1	53	67	16.3103
((((((...(.(((	chr14:24901238-24901545(+)$1	1	170	184	15.9655
((..((........	chr5:180651108-180651379(+)$1	1	33	47	19.4137
(((((.(((((((.	chr19:49841161-49841433(-)$1	1	17	31	20.1896
..))).))....))	chr16:3107347-3107633(-)$1	1	84	98	16.7413
))).......))))	chr11:197859-198150(-)$1	1	263	277	17.7758
(((((((.......	chr19:10406921-10407208(+)$1	1	30	44	18.6379

#PSSM
G : 0.53	g : 0.24	U : 0.10	C : 0.03	A : 0.03	a : 0.01	c : 0.01	u : 0.01	
G : 0.67	g : 0.27	C : 0.03	c : 0.01	
G : 0.58	g : 0.25	A : 0.05	C : 0.03	U : 0.03	u : 0.01	c : 0.01	
G : 0.55	g : 0.22	C : 0.08	A : 0.03	U : 0.03	c : 0.03	u : 0.01	a : 0.01	
C : 0.44	c : 0.20	G : 0.10	A : 0.08	U : 0.06	u : 0.05	g : 0.01	a : 0.01	
G : 0.53	g : 0.25	U : 0.08	C : 0.05	u : 0.03	A : 0.03	
G : 0.56	g : 0.27	A : 0.08	c : 0.03	U : 0.01	C : 0.01	
G : 0.68	g : 0.29	c : 0.01	
G : 0.67	g : 0.29	C : 0.01	c : 0.01	
A : 0.39	U : 0.13	a : 0.10	g : 0.08	C : 0.08	G : 0.06	c : 0.06	u : 0.05	
G : 0.56	g : 0.25	U : 0.06	A : 0.05	u : 0.03	a : 0.01	
G : 0.65	g : 0.27	a : 0.03	C : 0.01	U : 0.01	
G : 0.55	g : 0.29	C : 0.06	A : 0.05	U : 0.01	c : 0.01	
A : 0.24	G : 0.24	g : 0.17	C : 0.10	U : 0.10	c : 0.08	a : 0.03	u : 0.01	

#score	1140.4827586206898
#seq	58
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_CDS_m1_run1.nuc.txt

#NT
GGGGGUGGG	chr11:65339937-65340249(+)$1	312	35	44	19.2321
GGGGCGGGG	chr5:176981010-176981307(-)$1	297	124	133	19.9464
GGGGCUCGG	chr6:33405717-33406003(+)$1	286	112	121	18.2500
GGGGCUGGC	chr10:75551929-75552214(+)$1	285	135	144	18.8750
ggggccggg	chr7:128828802-128829124(+)$1	322	26	35	19.7678
GGGGGUGGG	chr22:40657959-40658219(+)$1	260	115	124	19.2321
GGGGCUGUG	chr9:35092272-35092526(-)$1	254	182	191	18.2500
GGGGCUGGC	chr4:1231761-1232051(-)$1	290	101	110	18.8750
GUGGCUGGG	chr1:155294909-155295219(+)$1	310	66	75	18.1607
GGGGCGGGG	chr10:103589510-103589751(-)$1	241	170	179	19.9464
GGAGCUGGG	chr15:75196903-75197220(-)$1	317	173	182	18.3392
GGGGCCGGG	chr21:46876225-46876484(+)$1	259	154	163	19.7678
GGGGGUGGG	chr11:208949-209282(+)$1	333	25	34	19.2321
GGGGCAGGG	chr17:77082264-77082515(+)$1	251	129	138	19.4107
GGGGCUUGG	chr7:77166694-77166990(+)$1	296	43	52	18.1607
GAGGCUGGG	chr19:36303022-36303358(-)$1	336	121	130	18.2500
GGGGCUGGG	chr8:144889666-144889946(-)$1	280	89	98	22.8035
GGGGGUGGG	chr17:80016432-80016722(-)$1	290	107	116	19.2321
GGGGGUGGG	chr11:803546-803820(-)$1	274	119	128	19.2321
GGGGUUGGG	chr14:24619403-24619644(+)$1	241	46	55	18.6964
GAGGCUGGG	chr16:29819050-29819401(+)$1	351	195	204	18.2500
GGGGCUGGG	chr15:75651559-75651783(-)$1	224	211	220	22.8035
GGGGGUGGG	chr7:99755527-99755812(-)$1	285	20	29	19.2321
GGGGCCGGG	chr6:32157586-32157918(-)$1	332	19	28	19.7678
GGAGCUGGG	chrX:153031617-153031875(+)$1	258	32	41	18.3392
GGGGCUGGC	chr17:7311431-7311690(+)$1	259	169	178	18.8750
GGGGCUGAG	chr9:35092384-35092639(-)$1	255	1	10	18.3392
ggggcaggg	chr21:47565675-47565906(-)$1	231	190	199	19.4107
GGGGCUGGC	chr9:139918132-139918440(-)$1	308	16	25	18.8750
GGGUCUGGG	chr16:88712720-88713041(-)$1	321	105	114	18.0714
AGGGCUGGG	chr19:15512002-15512288(-)$1	286	53	62	17.9821
ggggccggg	chr17:7232366-7232636(-)$1	270	55	64	19.7678
ggggcgggg	chr19:991795-992077(+)$1	282	13	22	19.9464
GGGGCUGGG	chr9:131029412-131029692(-)$1	280	21	30	22.8035
GGGGCCGGG	chr17:39976597-39976907(+)$1	310	129	138	19.7678
GGGGCUCGG	chr19:14040358-14040655(+)$1	297	206	215	18.2500
GGAGCUGGG	chrX:153031551-153031797(+)$1	246	98	107	18.3392
ggggcuggg	chr19:2096764-2097047(+)$1	283	24	33	22.8035
GGGGCUGAG	chr1:156213532-156213849(-)$1	317	42	51	18.3392
GGGGCUGCG	chr12:125270544-125270796(-)$1	252	49	58	18.2500
GGGGCUGGG	chr6:31696672-31696976(-)$1	304	55	64	22.8035
GGGGCUGGC	chr4:140651490-140651775(+)$1	285	207	216	18.8750
GGGGCUGGG	chr1:36787809-36788065(+)$1	256	125	134	22.8035
GGGGAUGGG	chr1:46489221-46489545(+)$1	324	195	204	18.6964
GGGGCGGGG	chr7:100877286-100877559(-)$1	273	20	29	19.9464
GGGGCUGGC	chr17:7311490-7311793(+)$1	303	110	119	18.8750
GGGGCGGGG	chr6:30457862-30458178(+)$1	316	110	119	19.9464
GGGGGUGGG	chr19:10227308-10227600(-)$1	292	129	138	19.2321
GGGGCCGGG	chr11:376803-377066(+)$1	263	112	121	19.7678
GGGGCGGGG	chr2:135676182-135676537(+)$1	355	156	165	19.9464
ggggcgggg	chr11:65325234-65325513(-)$1	279	131	140	19.9464
GGGGCUGGG	chr15:75651394-75651652(-)$1	258	80	89	22.8035
GGGGCGGGG	chr19:13260886-13261197(-)$1	311	113	122	19.9464
GGGGCUGGG	chr14:103570900-103571184(+)$1	284	134	143	22.8035
GGGACUGGG	chr13:111357955-111358243(-)$1	288	38	47	18.0714

#otherMatches

#Struct PSSM
e[agggggg	chr1:3417721-3418018(-)$1	297	165	174	22.8035
nnggggggg	chr11:65339937-65340249(+)$1	312	35	44	19.2321
DDD{AKKCC	chr5:176981010-176981307(-)$1	297	124	133	19.9464
{FFFFFF{D	chr6:33405717-33406003(+)$1	286	112	121	18.2500
[ccceeeee	chr10:75551929-75552214(+)$1	285	135	144	18.8750
FFFFFF{DD	chr7:128828802-128829124(+)$1	322	26	35	19.7678
lffffff22	chr22:40657959-40658219(+)$1	260	115	124	19.2321
ee55555ee	chr9:35092272-35092526(-)$1	254	182	191	18.2500
dffffff:c	chr4:1231761-1232051(-)$1	290	101	110	18.8750
gggggg555	chr1:155294909-155295219(+)$1	310	66	75	18.1607
=========	chr10:103589510-103589751(-)$1	241	170	179	19.9464
ffff22ddd	chr15:75196903-75197220(-)$1	317	173	182	18.3392
ggggg[ddd	chr21:46876225-46876484(+)$1	259	154	163	19.7678
GGGGGGGa[	chr11:208949-209282(+)$1	333	25	34	19.2321
========n	chr17:77082264-77082515(+)$1	251	129	138	19.4107
mmeeeee:D	chr7:77166694-77166990(+)$1	296	43	52	18.1607
JJJJJJJJJ	chr19:36303022-36303358(-)$1	336	121	130	18.2500
ggg[a!!ii	chr8:144889666-144889946(-)$1	280	89	98	22.8035
ggfffffff	chr17:80016432-80016722(-)$1	290	107	116	19.2321
========:	chr11:803546-803820(-)$1	274	119	128	19.2321
IIIIIIIII	chr14:24619403-24619644(+)$1	241	46	55	18.6964
"""ccc[dd	chr16:29819050-29819401(+)$1	351	195	204	18.2500
JJJJJJJJJ	chr15:75651559-75651783(-)$1	224	211	220	22.8035
GGGGGGGFF	chr7:99755527-99755812(-)$1	285	20	29	19.2321
JJJJJJJJJ	chr6:32157586-32157918(-)$1	332	19	28	19.7678
eeeee:CCC	chrX:153031617-153031875(+)$1	258	32	41	18.3392
ffffffHHH	chr17:7311431-7311690(+)$1	259	169	178	18.8750
FFFFF{BBB	chr9:35092384-35092639(-)$1	255	1	10	18.3392
333bbDDDD	chr21:47565675-47565906(-)$1	231	190	199	19.4107
II:bb[ddd	chr9:139918132-139918440(-)$1	308	16	25	18.8750
eeeee]ddd	chr16:88712720-88713041(-)$1	321	105	114	18.0714
BKKJJJJJJ	chr19:15512002-15512288(-)$1	286	53	62	17.9821
[ffffff[b	chr17:7232366-7232636(-)$1	270	55	64	19.7678
IIIIIIICC	chr19:991795-992077(+)$1	282	13	22	19.9464
DDDFFFFFF	chr9:131029412-131029692(-)$1	280	21	30	22.8035
ggggggddd	chr17:39976597-39976907(+)$1	310	129	138	19.7678
ppppdddd]	chr19:14040358-14040655(+)$1	297	206	215	18.2500
dd]bb:ddd	chrX:153031551-153031797(+)$1	246	98	107	18.3392
eee[bb[a[	chr19:2096764-2097047(+)$1	283	24	33	22.8035
tiiiiiiii	chr1:156213532-156213849(-)$1	317	42	51	18.3392
d]bb22fff	chr12:125270544-125270796(-)$1	252	49	58	18.2500
ggg[a!!dd	chr6:31696672-31696976(-)$1	304	55	64	22.8035
bbccccccb	chr4:140651490-140651775(+)$1	285	207	216	18.8750
FFFFF{DDD	chr1:36787809-36788065(+)$1	256	125	134	22.8035
DDD}CCCCC	chr1:46489221-46489545(+)$1	324	195	204	18.6964
EEEE{CCCc	chr7:100877286-100877559(-)$1	273	20	29	19.9464
ggggggg[a	chr17:7311490-7311793(+)$1	303	110	119	18.8750
ccc22bb]f	chr6:30457862-30458178(+)$1	316	110	119	19.9464
ddccc[bb[	chr19:10227308-10227600(-)$1	292	129	138	19.2321
gggggg]bb	chr11:376803-377066(+)$1	263	112	121	19.7678
ffffff[am	chr2:135676182-135676537(+)$1	355	156	165	19.9464
ddeeeee[h	chr11:65325234-65325513(-)$1	279	131	140	19.9464
ccc[bbiii	chr15:75651394-75651652(-)$1	258	80	89	22.8035
ggggg]ccc	chr19:13260886-13261197(-)$1	311	113	122	19.9464
[ffffff[c	chr14:103570900-103571184(+)$1	284	134	143	22.8035
ddddbb!!a	chr13:111357955-111358243(-)$1	288	38	47	18.0714

#DB
(.(((((((	chr1:3417721-3418018(-)$1	1	165	174	22.8035
..)))))))	chr11:65339937-65340249(+)$1	1	35	44	19.2321
(((.(..((	chr5:176981010-176981307(-)$1	1	124	133	19.9464
.((((((.(	chr6:33405717-33406003(+)$1	1	112	121	18.2500
.((((((((	chr10:75551929-75552214(+)$1	1	135	144	18.8750
((((((.((	chr7:128828802-128829124(+)$1	1	26	35	19.7678
.))))))..	chr22:40657959-40658219(+)$1	1	115	124	19.2321
)).....))	chr9:35092272-35092526(-)$1	1	182	191	18.2500
))))))).(	chr4:1231761-1232051(-)$1	1	101	110	18.8750
))))))...	chr1:155294909-155295219(+)$1	1	66	75	18.1607
)))))))))	chr10:103589510-103589751(-)$1	1	170	179	19.9464
))))..)))	chr15:75196903-75197220(-)$1	1	173	182	18.3392
(((((.(((	chr21:46876225-46876484(+)$1	1	154	163	19.7678
((((((((.	chr11:208949-209282(+)$1	1	25	34	19.2321
((((((((.	chr17:77082264-77082515(+)$1	1	129	138	19.4107
..))))).(	chr7:77166694-77166990(+)$1	1	43	52	18.1607
)))))))))	chr19:36303022-36303358(-)$1	1	121	130	18.2500
(((.(..((	chr8:144889666-144889946(-)$1	1	89	98	22.8035
))(((((((	chr17:80016432-80016722(-)$1	1	107	116	19.2321
)))))))).	chr11:803546-803820(-)$1	1	119	128	19.2321
(((((((((	chr14:24619403-24619644(+)$1	1	46	55	18.6964
...(((.((	chr16:29819050-29819401(+)$1	1	195	204	18.2500
)))))))))	chr15:75651559-75651783(-)$1	1	211	220	22.8035
(((((((((	chr7:99755527-99755812(-)$1	1	20	29	19.2321
(((((((((	chr6:32157586-32157918(-)$1	1	19	28	19.7678
))))).(((	chrX:153031617-153031875(+)$1	1	32	41	18.3392
)))))))))	chr17:7311431-7311690(+)$1	1	169	178	18.8750
(((((.(((	chr9:35092384-35092639(-)$1	1	1	10	18.3392
...))))))	chr21:47565675-47565906(-)$1	1	190	199	19.4107
((.((.(((	chr9:139918132-139918440(-)$1	1	16	25	18.8750
))))).)))	chr16:88712720-88713041(-)$1	1	105	114	18.0714
(..((((((	chr19:15512002-15512288(-)$1	1	53	62	17.9821
.((((((.(	chr17:7232366-7232636(-)$1	1	55	64	19.7678
(((((((((	chr19:991795-992077(+)$1	1	13	22	19.9464
(((((((((	chr9:131029412-131029692(-)$1	1	21	30	22.8035
(((((((((	chr17:39976597-39976907(+)$1	1	129	138	19.7678
....)))).	chr19:14040358-14040655(+)$1	1	206	215	18.2500
)).)).(((	chrX:153031551-153031797(+)$1	1	98	107	18.3392
(((.((.(.	chr19:2096764-2097047(+)$1	1	24	33	22.8035
.))))))))	chr1:156213532-156213849(-)$1	1	42	51	18.3392
).))..)))	chr12:125270544-125270796(-)$1	1	49	58	18.2500
(((.(..((	chr6:31696672-31696976(-)$1	1	55	64	22.8035
(((((((((	chr4:140651490-140651775(+)$1	1	207	216	18.8750
(((((.(((	chr1:36787809-36788065(+)$1	1	125	134	22.8035
))).)))))	chr1:46489221-46489545(+)$1	1	195	204	18.6964
((((.((((	chr7:100877286-100877559(-)$1	1	20	29	19.9464
(((((((.(	chr17:7311490-7311793(+)$1	1	110	119	18.8750
)))..)).)	chr6:30457862-30458178(+)$1	1	110	119	19.9464
(((((.((.	chr19:10227308-10227600(-)$1	1	129	138	19.2321
)))))).))	chr11:376803-377066(+)$1	1	112	121	19.7678
((((((.(.	chr2:135676182-135676537(+)$1	1	156	165	19.9464
(((((((.(	chr11:65325234-65325513(-)$1	1	131	140	19.9464
(((.(((((	chr15:75651394-75651652(-)$1	1	80	89	22.8035
))))).)))	chr19:13260886-13261197(-)$1	1	113	122	19.9464
.((((((.(	chr14:103570900-103571184(+)$1	1	134	143	22.8035
((((((..(	chr13:111357955-111358243(-)$1	1	38	47	18.0714

#PSSM
G : 0.87	g : 0.10	A : 0.01	
G : 0.83	g : 0.10	A : 0.03	U : 0.01	
G : 0.83	g : 0.10	A : 0.05	
G : 0.85	g : 0.10	U : 0.01	A : 0.01	
C : 0.73	G : 0.12	c : 0.10	U : 0.01	A : 0.01	
U : 0.69	G : 0.10	C : 0.07	c : 0.03	g : 0.03	A : 0.01	a : 0.01	u : 0.01	
G : 0.83	g : 0.10	C : 0.03	U : 0.01	
G : 0.82	g : 0.10	A : 0.03	U : 0.01	C : 0.01	
G : 0.78	C : 0.10	g : 0.10	

#score	1099.142857142858
#seq	56
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_UTR_m3_run2.nuc.txt

#NT
UUUUUUU	chr6:136582294-136582597(-)$1	303	226	233	14.1538
UUGUUUA	chr14:73572495-73572892(+)$1	397	58	65	13.4615
UUGUUUU	chr4:74286711-74286937(+)$1	226	86	93	17.0769
UUUUUUU	chr7:23561678-23561975(-)$1	297	81	88	14.1538
UUGUUUU	chr2:11357115-11357393(-)$1	278	27	34	17.0769
UUGUAUU	chr2:197657587-197657898(-)$1	311	172	179	12.9999
UUCUUUU	chr2:153528871-153529202(-)$1	331	22	29	14.0769
uuuuuuu	chr2:47387783-47388044(-)$1	261	31	38	14.1538
UUGUUUU	chr12:69229565-69229883(+)$1	318	34	41	17.0769
CUGUUUU	chr7:139094218-139094506(+)$1	288	79	86	13.1538
UUGUUUu	chr5:179151675-179151885(+)$1	210	187	194	17.0769
UUAUUUU	chr7:106840509-106840840(+)$1	331	84	91	13.8461
UUGUUUU	chr3:40503027-40503252(+)$1	225	53	60	17.0769
UUGUUUU	chr17:62498464-62498719(-)$1	255	102	109	17.0769
UUGUUUA	chr12:69230353-69230635(+)$1	282	16	23	13.4615
CUGUUUU	chr6:108192791-108193099(-)$1	308	241	248	13.1538
UUCUUUU	chr17:56083062-56083352(-)$1	290	207	214	14.0769
auguuuu	chr5:77004048-77004273(-)$1	225	21	28	12.9999
UUCUUUU	chr8:74205732-74205964(-)$1	232	9	16	14.0769
UUGUUUU	chr1:1325738-1326027(-)$1	289	72	79	17.0769
UUGUGUU	chr14:39648288-39648550(+)$1	262	199	206	12.9999
UUGUCUU	chr16:4909765-4910071(+)$1	306	83	90	12.9999
UUUUUUU	chr17:16029295-16029630(-)$1	335	23	30	14.1538
UUGUGUU	chr19:8531015-8531242(+)$1	227	48	55	12.9999
GUGUUUU	chr1:150198843-150199132(-)$1	289	261	268	12.8461
UUGUUUU	chr16:89348391-89348699(-)$1	308	13	20	17.0769
UUGUUUA	chr18:55282772-55283064(-)$1	292	198	205	13.4615
UUCUUUU	chr11:122929940-122930143(-)$1	203	134	141	14.0769
UUUUUUU	chr3:73114124-73114399(+)$1	275	228	235	14.1538
AUGUUUU	chr6:76343196-76343500(+)$1	304	5	12	12.9999
UUGUUUC	chr3:50099303-50099570(+)$1	267	70	77	12.9999
UUCUUUU	chr7:134632261-134632621(+)$1	360	322	329	14.0769
UUGUAUU	chr14:91928372-91928665(-)$1	293	52	59	12.9999
UUUUUUU	chr20:34319938-34320160(-)$1	222	88	95	14.1538
UUGUUUA	chr4:174253109-174253474(-)$1	365	12	19	13.4615
UUAUUUU	chr6:163956023-163956259(+)$1	236	186	193	13.8461
UUUUUUU	chr12:76462587-76462864(-)$1	277	37	44	14.1538
UUGUUUU	chr18:19208921-19209213(+)$1	292	81	88	17.0769
UUGUUUG	chr14:73577478-73577780(+)$1	302	45	52	13.1538
CUGUUUU	chr15:69072332-69072573(-)$1	241	194	201	13.1538
UUGUUUA	chr8:74204910-74205133(-)$1	223	84	91	13.4615
AUGUUUU	chr11:2972904-2973147(-)$1	243	67	74	12.9999
CUGUUUU	chr15:44063286-44063547(+)$1	261	6	13	13.1538
UUGUUUG	chr11:3023665-3023937(-)$1	272	25	32	13.1538
UUGCUUU	chr2:62998368-62998627(+)$1	259	90	97	12.5384
UUGUUUU	chr16:11933538-11933806(-)$1	268	258	265	17.0769
UUGCUUU	chr21:40717000-40717266(-)$1	266	232	239	12.5384
uuguuuu	chr2:172582023-172582307(+)$1	284	70	77	17.0769
UUGUGUU	chr12:108923825-108924194(-)$1	369	295	302	12.9999
UUGUUUG	chr13:107211698-107212024(-)$1	326	8	15	13.1538
UUGCUUU	chr17:66511434-66511684(+)$1	250	55	62	12.5384
CUGUUUU	chr12:76443434-76443666(-)$1	232	84	91	13.1538
UUGUAUU	chr2:198359265-198359540(-)$1	275	170	177	12.9999
UUAUUUU	chr4:174253035-174253309(-)$1	274	129	136	13.8461
UUGUUUU	chr6:163982903-163983167(+)$1	264	239	246	17.0769
UUCUUUU	chr12:53849148-53849378(+)$1	230	193	200	14.0769
UUGUCUU	chr17:62498192-62498426(-)$1	234	69	76	12.9999
UUAUUUU	chr12:100886176-100886459(+)$1	283	252	259	13.8461
UUGUCUU	chr16:69687038-69687300(+)$1	262	25	32	12.9999
uuguuua	chr17:15419680-15419992(-)$1	312	278	285	13.4615
UUGUUUU	chr20:34317289-34317550(-)$1	261	197	204	17.0769
UUCUUUU	chr17:74731023-74731348(-)$1	325	92	99	14.0769
UUGUUUU	chr1:52252106-52252402(+)$1	296	80	87	17.0769
UUUUUUU	chr8:124383041-124383288(-)$1	247	4	11	14.1538

#otherMatches

#Struct PSSM
ppppeee	chr17:48822985-48823268(+)$1	283	38	45	13.4615
hhhhhhh	chr6:136582294-136582597(-)$1	303	226	233	14.1538
qqqffff	chr14:73572495-73572892(+)$1	397	58	65	13.4615
=======	chr4:74286711-74286937(+)$1	226	86	93	17.0769
::ggggg	chr7:23561678-23561975(-)$1	297	81	88	14.1538
DDLLLDD	chr2:11357115-11357393(-)$1	278	27	34	17.0769
dddd:::	chr2:197657587-197657898(-)$1	311	172	179	12.9999
Hffffff	chr2:153528871-153529202(-)$1	331	22	29	14.0769
^^^^^^^	chr2:47387783-47388044(-)$1	261	31	38	14.1538
JJJJJJJ	chr12:69229565-69229883(+)$1	318	34	41	17.0769
bb[eeee	chr7:139094218-139094506(+)$1	288	79	86	13.1538
ffff:::	chr5:179151675-179151885(+)$1	210	187	194	17.0769
ppppfff	chr7:106840509-106840840(+)$1	331	84	91	13.8461
=======	chr3:40503027-40503252(+)$1	225	53	60	17.0769
GGGGeee	chr17:62498464-62498719(-)$1	255	102	109	17.0769
FFCCC{D	chr12:69230353-69230635(+)$1	282	16	23	13.4615
d:fffff	chr6:108192791-108193099(-)$1	308	241	248	13.1538
fff!!dd	chr17:56083062-56083352(-)$1	290	207	214	14.0769
oooooii	chr5:77004048-77004273(-)$1	225	21	28	12.9999
:::::::	chr8:74205732-74205964(-)$1	232	9	16	14.0769
eeeee]e	chr1:1325738-1326027(-)$1	289	72	79	17.0769
FFfffff	chr14:39648288-39648550(+)$1	262	199	206	12.9999
gggghhh	chr16:4909765-4910071(+)$1	306	83	90	12.9999
GGGGGGG	chr17:16029295-16029630(-)$1	335	23	30	14.1538
ccccccw	chr19:8531015-8531242(+)$1	227	48	55	12.9999
dddddmm	chr1:150198843-150199132(-)$1	289	261	268	12.8461
::ggggg	chr16:89348391-89348699(-)$1	308	13	20	17.0769
dd:::::	chr18:55282772-55283064(-)$1	292	198	205	13.4615
dd]hhhh	chr11:122929940-122930143(-)$1	203	134	141	14.0769
=======	chr3:73114124-73114399(+)$1	275	228	235	14.1538
fccc+++	chr6:76343196-76343500(+)$1	304	5	12	12.9999
fffff[a	chr3:50099303-50099570(+)$1	267	70	77	12.9999
eeemmmm	chr7:134632261-134632621(+)$1	360	322	329	14.0769
=======	chr14:91928372-91928665(-)$1	293	52	59	12.9999
=======	chr20:34319938-34320160(-)$1	222	88	95	14.1538
cccmmmm	chr4:174253109-174253474(-)$1	365	12	19	13.4615
ffflllf	chr6:163956023-163956259(+)$1	236	186	193	13.8461
GJJJJJJ	chr12:76462587-76462864(-)$1	277	37	44	14.1538
cc[====	chr18:19208921-19209213(+)$1	292	81	88	17.0769
ffffff[	chr14:73577478-73577780(+)$1	302	45	52	13.1538
55fffff	chr15:69072332-69072573(-)$1	241	194	201	13.1538
mbb]ggg	chr8:74204910-74205133(-)$1	223	84	91	13.4615
$ffffff	chr11:2972904-2973147(-)$1	243	67	74	12.9999
JJJJJJJ	chr15:44063286-44063547(+)$1	261	6	13	13.1538
ggJJJJJ	chr11:3023665-3023937(-)$1	272	25	32	13.1538
#dddd!!	chr2:62998368-62998627(+)$1	259	90	97	12.5384
ggggggg	chr16:11933538-11933806(-)$1	268	258	265	17.0769
YFFFFFF	chr21:40717000-40717266(-)$1	266	232	239	12.5384
=======	chr2:172582023-172582307(+)$1	284	70	77	17.0769
iiiiiii	chr12:108923825-108924194(-)$1	369	295	302	12.9999
cc[ffff	chr13:107211698-107212024(-)$1	326	8	15	13.1538
ccc]ggg	chr17:66511434-66511684(+)$1	250	55	62	12.5384
dd[dddd	chr12:76443434-76443666(-)$1	232	84	91	13.1538
dddd:::	chr2:198359265-198359540(-)$1	275	170	177	12.9999
nnnnnee	chr4:174253035-174253309(-)$1	274	129	136	13.8461
YYCCC}H	chr6:163982903-163983167(+)$1	264	239	246	17.0769
mmmmfff	chr12:53849148-53849378(+)$1	230	193	200	14.0769
nccc22b	chr17:62498192-62498426(-)$1	234	69	76	12.9999
zzzzzzz	chr12:100886176-100886459(+)$1	283	252	259	13.8461
DD:::::	chr16:69687038-69687300(+)$1	262	25	32	12.9999
iiiiiii	chr17:15419680-15419992(-)$1	312	278	285	13.4615
::eeeee	chr20:34317289-34317550(-)$1	261	197	204	17.0769
wwwwwww	chr17:74731023-74731348(-)$1	325	92	99	14.0769
::::eee	chr1:52252106-52252402(+)$1	296	80	87	17.0769
:::::::	chr8:124383041-124383288(-)$1	247	4	11	14.1538

#DB
....)))	chr17:48822985-48823268(+)$1	1	38	45	13.4615
)))))))	chr6:136582294-136582597(-)$1	1	226	233	14.1538
...))))	chr14:73572495-73572892(+)$1	1	58	65	13.4615
(((((((	chr4:74286711-74286937(+)$1	1	86	93	17.0769
..(((((	chr7:23561678-23561975(-)$1	1	81	88	14.1538
((...((	chr2:11357115-11357393(-)$1	1	27	34	17.0769
))))...	chr2:197657587-197657898(-)$1	1	172	179	12.9999
(((((((	chr2:153528871-153529202(-)$1	1	22	29	14.0769
.......	chr2:47387783-47388044(-)$1	1	31	38	14.1538
(((((((	chr12:69229565-69229883(+)$1	1	34	41	17.0769
((.((((	chr7:139094218-139094506(+)$1	1	79	86	13.1538
))))...	chr5:179151675-179151885(+)$1	1	187	194	17.0769
....)))	chr7:106840509-106840840(+)$1	1	84	91	13.8461
)))))))	chr3:40503027-40503252(+)$1	1	53	60	17.0769
))))(((	chr17:62498464-62498719(-)$1	1	102	109	17.0769
(((((.(	chr12:69230353-69230635(+)$1	1	16	23	13.4615
).(((((	chr6:108192791-108193099(-)$1	1	241	248	13.1538
(((..((	chr17:56083062-56083352(-)$1	1	207	214	14.0769
.....))	chr5:77004048-77004273(-)$1	1	21	28	12.9999
.......	chr8:74205732-74205964(-)$1	1	9	16	14.0769
))))).)	chr1:1325738-1326027(-)$1	1	72	79	17.0769
))(((((	chr14:39648288-39648550(+)$1	1	199	206	12.9999
))))(((	chr16:4909765-4910071(+)$1	1	83	90	12.9999
(((((((	chr17:16029295-16029630(-)$1	1	23	30	14.1538
((((((.	chr19:8531015-8531242(+)$1	1	48	55	12.9999
)((((..	chr1:150198843-150199132(-)$1	1	261	268	12.8461
..(((((	chr16:89348391-89348699(-)$1	1	13	20	17.0769
)).....	chr18:55282772-55283064(-)$1	1	198	205	13.4615
)).))))	chr11:122929940-122930143(-)$1	1	134	141	14.0769
)))))))	chr3:73114124-73114399(+)$1	1	228	235	14.1538
((((...	chr6:76343196-76343500(+)$1	1	5	12	12.9999
(((((.(	chr3:50099303-50099570(+)$1	1	70	77	12.9999
(((....	chr7:134632261-134632621(+)$1	1	322	329	14.0769
)))))))	chr14:91928372-91928665(-)$1	1	52	59	12.9999
(((((((	chr20:34319938-34320160(-)$1	1	88	95	14.1538
(((....	chr4:174253109-174253474(-)$1	1	12	19	13.4615
(((...)	chr6:163956023-163956259(+)$1	1	186	193	13.8461
(((((((	chr12:76462587-76462864(-)$1	1	37	44	14.1538
((.((((	chr18:19208921-19209213(+)$1	1	81	88	17.0769
((((((.	chr14:73577478-73577780(+)$1	1	45	52	13.1538
..)))))	chr15:69072332-69072573(-)$1	1	194	201	13.1538
.)).)))	chr8:74204910-74205133(-)$1	1	84	91	13.4615
.((((((	chr11:2972904-2973147(-)$1	1	67	74	12.9999
(((((((	chr15:44063286-44063547(+)$1	1	6	13	13.1538
))(((((	chr11:3023665-3023937(-)$1	1	25	32	13.1538
.((((..	chr2:62998368-62998627(+)$1	1	90	97	12.5384
)))))))	chr16:11933538-11933806(-)$1	1	258	265	17.0769
.))))))	chr21:40717000-40717266(-)$1	1	232	239	12.5384
(((((((	chr2:172582023-172582307(+)$1	1	70	77	17.0769
(((((((	chr12:108923825-108924194(-)$1	1	295	302	12.9999
((.((((	chr13:107211698-107212024(-)$1	1	8	15	13.1538
))).)))	chr17:66511434-66511684(+)$1	1	55	62	12.5384
((.((((	chr12:76443434-76443666(-)$1	1	84	91	13.1538
))))...	chr2:198359265-198359540(-)$1	1	170	177	12.9999
.....))	chr4:174253035-174253309(-)$1	1	129	136	13.8461
..))).)	chr6:163982903-163983167(+)$1	1	239	246	17.0769
....)))	chr12:53849148-53849378(+)$1	1	193	200	14.0769
.)))..)	chr17:62498192-62498426(-)$1	1	69	76	12.9999
.......	chr12:100886176-100886459(+)$1	1	252	259	13.8461
((.....	chr16:69687038-69687300(+)$1	1	25	32	12.9999
)))))))	chr17:15419680-15419992(-)$1	1	278	285	13.4615
..(((((	chr20:34317289-34317550(-)$1	1	197	204	17.0769
.......	chr17:74731023-74731348(-)$1	1	92	99	14.0769
....(((	chr1:52252106-52252402(+)$1	1	80	87	17.0769
.......	chr8:124383041-124383288(-)$1	1	4	11	14.1538

#PSSM
U : 0.81	C : 0.07	u : 0.04	A : 0.03	a : 0.01	G : 0.01	
U : 0.93	u : 0.06	
G : 0.66	U : 0.10	C : 0.10	A : 0.06	g : 0.04	u : 0.01	
U : 0.89	u : 0.06	C : 0.04	
U : 0.79	u : 0.06	A : 0.04	G : 0.04	C : 0.04	
U : 0.93	u : 0.06	
U : 0.76	A : 0.09	u : 0.06	G : 0.04	C : 0.01	a : 0.01	

#score	925.1538461538455
#seq	65
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_transcript_m3_run1.nuc.txt

#NT
cacacacau	chr22:50003975-50004194(-)$1	219	6	15	20.8135
CACACACAC	chr1:27921677-27921897(-)$1	220	63	72	24.8813
CACACGCAC	chr20:35485736-35485973(-)$1	237	222	231	20.2203
cacacacac	chr1:228532110-228532422(+)$1	312	120	129	24.8813
CACACACAC	chr2:178214347-178214578(-)$1	231	7	16	24.8813
CACACACAU	chr3:48583347-48583597(-)$1	250	58	67	20.8135
CACACACAC	chr19:13114935-13115168(+)$1	233	221	230	24.8813
cacgcacac	chr22:45128411-45128649(+)$1	238	132	141	20.3050
cacacacau	chr22:50004018-50004237(-)$1	219	4	13	20.8135
cacacacac	chr22:35738964-35739187(+)$1	223	32	41	24.8813
cacaaacac	chr18:75696629-75696838(-)$1	209	75	84	20.7288
cacaaacac	chr3:127293637-127293900(-)$1	263	131	140	20.7288
cacacacac	chr1:35817820-35818060(+)$1	240	169	178	24.8813
cacacacac	chr19:41938524-41938780(-)$1	256	11	20	24.8813
CACACCCAC	chr22:50037682-50037915(-)$1	233	59	68	20.3050
gacacacac	chr10:72464356-72464648(+)$1	292	28	37	20.3050
CACACACAA	chr4:1218261-1218518(-)$1	257	87	96	20.4745
cacacacac	chr19:4035761-4035992(+)$1	231	30	39	24.8813
cacacacac	chr8:131002549-131002799(-)$1	250	77	86	24.8813
cacaaacac	chr13:113539812-113540095(+)$1	283	129	138	20.7288
cacaaacac	chr13:113539705-113539960(+)$1	255	236	245	20.7288
CACACACAC	chr2:236445132-236445401(+)$1	269	89	98	24.8813
CACUCACAC	chr16:89647563-89647824(+)$1	261	80	89	20.3898
AACACACAC	chr19:1612945-1613194(-)$1	249	30	39	20.2203
cacacacac	chr17:80786195-80786420(+)$1	225	3	12	24.8813
cacacacac	chr9:97845609-97845852(+)$1	243	159	168	24.8813
CACACACAC	chr10:134517313-134517687(+)$1	374	5	14	24.8813
cacacacac	chr1:1415198-1415443(+)$1	245	48	57	24.8813
cacacacac	chr13:114796605-114796839(-)$1	234	0	9	24.8813
cacacacac	chr22:47555082-47555362(+)$1	280	91	100	24.8813
gacacacac	chr21:46949548-46949775(-)$1	227	11	20	20.3050
cacacacac	chr13:114561554-114561786(-)$1	232	116	125	24.8813
cacacacac	chr9:94601827-94602083(-)$1	256	66	75	24.8813
cacacacac	chr18:12478284-12478506(-)$1	222	42	51	24.8813
cacacacac	chr22:47401473-47401707(+)$1	234	12	21	24.8813
cacacacac	chr19:4036664-4036877(+)$1	213	42	51	24.8813
cacacacac	chr22:40364389-40364701(+)$1	312	124	133	24.8813
cacacacac	chr10:87387821-87388094(-)$1	273	0	9	24.8813
cagacacac	chr9:94581453-94581706(-)$1	253	1	10	20.0508
cacacacac	chr21:45731325-45731570(+)$1	245	88	97	24.8813
CACACACUC	chr13:50851079-50851314(+)$1	235	46	55	20.0508
cacacacaC	chr6:158291495-158291731(+)$1	236	126	135	24.8813
cacacacau	chr18:75696849-75697065(-)$1	216	1	10	20.8135
cccacacac	chr6:158051913-158052157(+)$1	244	165	174	20.2203
cacacccac	chr16:81703154-81703445(+)$1	291	18	27	20.3050
cacacacac	chr17:80786174-80786395(+)$1	221	24	33	24.8813
cacacacac	chr1:65467281-65467521(-)$1	240	117	126	24.8813
cacacacac	chr13:114561586-114561806(-)$1	220	136	145	24.8813
cacucacac	chr7:158573881-158574106(-)$1	225	0	9	20.3898
cacacacac	chr22:48043251-48043494(+)$1	243	109	118	24.8813
CCCACACAC	chr1:1454106-1454348(+)$1	242	6	15	20.2203
cacacacac	chr7:1927567-1927814(-)$1	247	129	138	24.8813
cacacacac	chr7:39300053-39300319(+)$1	266	31	40	24.8813
cacacacac	chr17:40373807-40374111(-)$1	304	8	17	24.8813
cacacacac	chr2:225407065-225407432(-)$1	367	144	153	24.8813
cacacacac	chr1:54687235-54687502(+)$1	267	140	149	24.8813
cacccacac	chr17:76119438-76119651(-)$1	213	193	202	20.3050
cacaaacac	chr18:75696649-75696851(-)$1	202	88	97	20.7288

#otherMatches

#Struct PSSM
:::::::::	chr8:41574686-41574952(-)$1	266	145	154	20.8135
B::::JJJJ	chr22:50003975-50004194(-)$1	219	6	15	20.8135
:::::::::	chr1:27921677-27921897(-)$1	220	63	72	24.8813
:::::::::	chr20:35485736-35485973(-)$1	237	222	231	20.2203
sssssssss	chr1:228532110-228532422(+)$1	312	120	129	24.8813
:::::::::	chr2:178214347-178214578(-)$1	231	7	16	24.8813
^^^^^^^^^	chr3:48583347-48583597(-)$1	250	58	67	20.8135
nnnnndddd	chr19:13114935-13115168(+)$1	233	221	230	24.8813
D::bbmmmm	chr22:45128411-45128649(+)$1	238	132	141	20.3050
::::::ddd	chr22:50004018-50004237(-)$1	219	4	13	20.8135
:::::::::	chr22:35738964-35739187(+)$1	223	32	41	24.8813
yyyyyyyyy	chr18:75696629-75696838(-)$1	209	75	84	20.7288
:::::::::	chr3:127293637-127293900(-)$1	263	131	140	20.7288
:::::::::	chr1:35817820-35818060(+)$1	240	169	178	24.8813
:::::::::	chr19:41938524-41938780(-)$1	256	11	20	24.8813
CC::bbbb[	chr22:50037682-50037915(-)$1	233	59	68	20.3050
:::::::::	chr10:72464356-72464648(+)$1	292	28	37	20.3050
f>>>>>>>>	chr4:1218261-1218518(-)$1	257	87	96	20.4745
:::::::::	chr19:4035761-4035992(+)$1	231	30	39	24.8813
G::::::::	chr8:131002549-131002799(-)$1	250	77	86	24.8813
vvvvvvvee	chr13:113539812-113540095(+)$1	283	129	138	20.7288
:::::::::	chr13:113539705-113539960(+)$1	255	236	245	20.7288
fzzzzzzzz	chr2:236445132-236445401(+)$1	269	89	98	24.8813
::::::::d	chr16:89647563-89647824(+)$1	261	80	89	20.3898
qqqqqqeee	chr19:1612945-1613194(-)$1	249	30	39	20.2203
EEE:ccc$$	chr17:80786195-80786420(+)$1	225	3	12	24.8813
:::::::::	chr9:97845609-97845852(+)$1	243	159	168	24.8813
dddqqqqqq	chr10:134517313-134517687(+)$1	374	5	14	24.8813
::::::::c	chr1:1415198-1415443(+)$1	245	48	57	24.8813
:::::::::	chr13:114796605-114796839(-)$1	234	0	9	24.8813
cc:::::::	chr22:47555082-47555362(+)$1	280	91	100	24.8813
C::::::::	chr21:46949548-46949775(-)$1	227	11	20	20.3050
crrrrrrrr	chr13:114561554-114561786(-)$1	232	116	125	24.8813
^^^^^^^^^	chr9:94601827-94602083(-)$1	256	66	75	24.8813
FFF{BBKKB	chr18:12478284-12478506(-)$1	222	42	51	24.8813
:::::::::	chr22:47401473-47401707(+)$1	234	12	21	24.8813
:::::::::	chr19:4036664-4036877(+)$1	213	42	51	24.8813
:::::::::	chr22:40364389-40364701(+)$1	312	124	133	24.8813
:::::::::	chr10:87387821-87388094(-)$1	273	0	9	24.8813
:::::::::	chr9:94581453-94581706(-)$1	253	1	10	20.0508
c:::::::d	chr21:45731325-45731570(+)$1	245	88	97	24.8813
dddd[eeee	chr13:50851079-50851314(+)$1	235	46	55	20.0508
dd0000000	chr6:158291495-158291731(+)$1	236	126	135	24.8813
:::::::::	chr18:75696849-75697065(-)$1	216	1	10	20.8135
:::::::::	chr6:158051913-158052157(+)$1	244	165	174	20.2203
:::::::::	chr16:81703154-81703445(+)$1	291	18	27	20.3050
eee::::::	chr17:80786174-80786395(+)$1	221	24	33	24.8813
ccqqqqqqq	chr1:65467281-65467521(-)$1	240	117	126	24.8813
crrrrrrrr	chr13:114561586-114561806(-)$1	220	136	145	24.8813
:::::::CC	chr7:158573881-158574106(-)$1	225	0	9	20.3898
ddsssssss	chr22:48043251-48043494(+)$1	243	109	118	24.8813
ddddooooo	chr1:1454106-1454348(+)$1	242	6	15	20.2203
::::::::e	chr7:1927567-1927814(-)$1	247	129	138	24.8813
:::::::::	chr7:39300053-39300319(+)$1	266	31	40	24.8813
:::::::::	chr17:40373807-40374111(-)$1	304	8	17	24.8813
DDD::::::	chr2:225407065-225407432(-)$1	367	144	153	24.8813
gggssssss	chr1:54687235-54687502(+)$1	267	140	149	24.8813
:::::::::	chr17:76119438-76119651(-)$1	213	193	202	20.3050
^^^^^^^^^	chr18:75696649-75696851(-)$1	202	88	97	20.7288

#DB
.........	chr8:41574686-41574952(-)$1	1	145	154	20.8135
(....((((	chr22:50003975-50004194(-)$1	1	6	15	20.8135
.........	chr1:27921677-27921897(-)$1	1	63	72	24.8813
.........	chr20:35485736-35485973(-)$1	1	222	231	20.2203
.........	chr1:228532110-228532422(+)$1	1	120	129	24.8813
.........	chr2:178214347-178214578(-)$1	1	7	16	24.8813
.........	chr3:48583347-48583597(-)$1	1	58	67	20.8135
.....))))	chr19:13114935-13115168(+)$1	1	221	230	24.8813
)..((....	chr22:45128411-45128649(+)$1	1	132	141	20.3050
......(((	chr22:50004018-50004237(-)$1	1	4	13	20.8135
.........	chr22:35738964-35739187(+)$1	1	32	41	24.8813
.........	chr18:75696629-75696838(-)$1	1	75	84	20.7288
.........	chr3:127293637-127293900(-)$1	1	131	140	20.7288
.........	chr1:35817820-35818060(+)$1	1	169	178	24.8813
.........	chr19:41938524-41938780(-)$1	1	11	20	24.8813
((..((((.	chr22:50037682-50037915(-)$1	1	59	68	20.3050
.........	chr10:72464356-72464648(+)$1	1	28	37	20.3050
)........	chr4:1218261-1218518(-)$1	1	87	96	20.4745
.........	chr19:4035761-4035992(+)$1	1	30	39	24.8813
(........	chr8:131002549-131002799(-)$1	1	77	86	24.8813
.......))	chr13:113539812-113540095(+)$1	1	129	138	20.7288
.........	chr13:113539705-113539960(+)$1	1	236	245	20.7288
(........	chr2:236445132-236445401(+)$1	1	89	98	24.8813
........(	chr16:89647563-89647824(+)$1	1	80	89	20.3898
......)))	chr19:1612945-1613194(-)$1	1	30	39	20.2203
(((.(((..	chr17:80786195-80786420(+)$1	1	3	12	24.8813
.........	chr9:97845609-97845852(+)$1	1	159	168	24.8813
(((......	chr10:134517313-134517687(+)$1	1	5	14	24.8813
........(	chr1:1415198-1415443(+)$1	1	48	57	24.8813
.........	chr13:114796605-114796839(-)$1	1	0	9	24.8813
)).......	chr22:47555082-47555362(+)$1	1	91	100	24.8813
(........	chr21:46949548-46949775(-)$1	1	11	20	20.3050
(........	chr13:114561554-114561786(-)$1	1	116	125	24.8813
.........	chr9:94601827-94602083(-)$1	1	66	75	24.8813
(((.((..(	chr18:12478284-12478506(-)$1	1	42	51	24.8813
.........	chr22:47401473-47401707(+)$1	1	12	21	24.8813
.........	chr19:4036664-4036877(+)$1	1	42	51	24.8813
.........	chr22:40364389-40364701(+)$1	1	124	133	24.8813
.........	chr10:87387821-87388094(-)$1	1	0	9	24.8813
.........	chr9:94581453-94581706(-)$1	1	1	10	20.0508
).......(	chr21:45731325-45731570(+)$1	1	88	97	24.8813
((((.((((	chr13:50851079-50851314(+)$1	1	46	55	20.0508
)).......	chr6:158291495-158291731(+)$1	1	126	135	24.8813
.........	chr18:75696849-75697065(-)$1	1	1	10	20.8135
.........	chr6:158051913-158052157(+)$1	1	165	174	20.2203
.........	chr16:81703154-81703445(+)$1	1	18	27	20.3050
)))......	chr17:80786174-80786395(+)$1	1	24	33	24.8813
((.......	chr1:65467281-65467521(-)$1	1	117	126	24.8813
(........	chr13:114561586-114561806(-)$1	1	136	145	24.8813
.......((	chr7:158573881-158574106(-)$1	1	0	9	20.3898
((.......	chr22:48043251-48043494(+)$1	1	109	118	24.8813
((((.....	chr1:1454106-1454348(+)$1	1	6	15	20.2203
........(	chr7:1927567-1927814(-)$1	1	129	138	24.8813
.........	chr7:39300053-39300319(+)$1	1	31	40	24.8813
.........	chr17:40373807-40374111(-)$1	1	8	17	24.8813
(((......	chr2:225407065-225407432(-)$1	1	144	153	24.8813
(((......	chr1:54687235-54687502(+)$1	1	140	149	24.8813
.........	chr17:76119438-76119651(-)$1	1	193	202	20.3050
.........	chr18:75696649-75696851(-)$1	1	88	97	20.7288

#PSSM
c : 0.74	C : 0.20	g : 0.03	A : 0.01	
a : 0.76	A : 0.20	c : 0.01	C : 0.01	
c : 0.76	C : 0.22	g : 0.01	
a : 0.72	A : 0.20	g : 0.01	U : 0.01	u : 0.01	c : 0.01	
c : 0.69	C : 0.22	a : 0.08	
a : 0.76	A : 0.18	G : 0.01	C : 0.01	c : 0.01	
c : 0.77	C : 0.22	
a : 0.77	A : 0.20	U : 0.01	
c : 0.69	C : 0.20	u : 0.06	U : 0.01	A : 0.01	

#score	1357.7457627118642
#seq	59
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_CDS_m3_run1.nuc.txt

#NT
GGGCUCUGCC	chr20:62369626-62369881(+)$1	255	20	30	15.9803
GGGCCCCGCC	chr1:27022945-27023198(+)$1	253	125	135	19.0196
GGGCGCAGCC	chr5:173043246-173043507(-)$1	261	58	68	16.5686
GGGCUCAGCA	chr20:35491309-35491602(-)$1	293	22	32	15.1960
cggcccggcc	chr20:62371182-62371517(+)$1	335	12	22	15.5882
GGGCUCCGCG	chr3:52567648-52567895(-)$1	247	2	12	14.3137
CGGCCCUGCG	chr19:1467818-1468084(-)$1	266	150	160	14.7058
GGUCCCAGCC	chr12:124873017-124873332(-)$1	315	230	240	16.7647
GGGCCCUGGC	chrX:21959250-21959566(+)$1	316	20	30	16.4705
GGUCCCAGCU	chr19:14272231-14272572(+)$1	341	62	72	15.2941
GGGCCCUGGG	chr19:58991523-58991791(-)$1	268	194	204	15.3921
gggcccgggg	chr19:460626-460867(-)$1	241	71	81	15.1960
GGGCCCGGGA	chr10:91404103-91404458(-)$1	355	152	162	14.4117
GGUCCCAGCA	chr1:1355866-1356128(-)$1	262	6	16	14.9019
GGGCCCAGCG	chr11:66626979-66627226(-)$1	247	19	29	19.6078
CGGCCCAGCU	chr11:66625597-66625830(-)$1	233	214	224	15.3921
GGUCCCAGCC	chr19:1474682-1474941(-)$1	259	3	13	16.7647
GGGCCCAGCA	chr16:29998086-29998350(+)$1	264	179	189	18.8235
GGUCCCAGCU	chr2:172016826-172017094(-)$1	268	202	212	15.2941
GGGGCCAGCC	chr7:100841518-100841820(-)$1	302	17	27	16.4705
GGGGCCGGCC	chr19:2425964-2426258(-)$1	294	240	250	15.1960
GGGCCCGGCU	chr17:74533295-74533599(-)$1	304	66	76	17.9411
GGGCCCAGCG	chr17:30264218-30264507(+)$1	289	89	99	19.6078
GGGCCCGGGA	chr22:24988234-24988502(-)$1	268	31	41	14.4117
UGGCCCCGCC	chr3:196675256-196675550(-)$1	294	222	232	15.0980
UGGCCCAGCU	chr6:31762546-31762852(-)$1	306	81	91	15.2941
GGGCCCUGCU	chr17:79972815-79973074(+)$1	259	86	96	18.1372
GGGCCCGGCG	chr1:27023787-27024050(+)$1	263	87	97	18.3333
AGGCCCAGCU	chr1:6505670-6505922(-)$1	252	132	142	15.0980
GGGCCCAUCG	chr14:105911901-105912170(+)$1	269	24	34	14.9019
GGGGCCUGCC	chr9:116918129-116918385(+)$1	256	91	101	15.3921
GGGGCCUGCG	chr10:103454200-103454468(-)$1	268	142	152	14.3137
GGGCUCAGCC	chr21:45880123-45880386(+)$1	263	216	226	17.0588
GAGCCCAGCC	chr9:99212775-99213013(+)$1	238	4	14	16.0784
GGCCCCAGCG	chr7:5460710-5460980(-)$1	270	122	132	15.2941
GGGCACUGCC	chr16:67997747-67997993(-)$1	246	104	114	15.4901
CGGCCCUGCG	chr19:1467729-1467973(-)$1	244	39	49	14.7058
ggGCUCAGCC	chr20:3451843-3452093(+)$1	250	183	193	17.0588
UGGCCCUGCC	chr9:139701033-139701323(-)$1	290	148	158	15.6862
GGGCCCCGCC	chr3:142443302-142443599(+)$1	297	55	65	19.0196
GGGCCCGGCU	chr7:127670344-127670597(+)$1	253	220	230	17.9411
GGGCUCAGCC	chr21:45880280-45880535(+)$1	255	59	69	17.0588
gggcccgggc	chr1:2160041-2160332(+)$1	291	115	125	16.2745
GGGCCCACCU	chr19:42401278-42401569(+)$1	291	149	159	14.5098
GGGCCCCGAG	chr7:150777704-150777985(-)$1	281	163	173	14.0196
GGGCCCUGCC	chr14:103576580-103576828(+)$1	248	63	73	19.6078
gggcccgggg	chr16:87426116-87426425(+)$1	309	106	116	15.1960
GGGCCCAGGC	chr19:59081744-59082004(+)$1	260	45	55	17.5490
GAGCCCUGCC	chr1:28845117-28845400(+)$1	283	128	138	15.0000
GGGCCCAGGC	chr6:31864774-31865112(-)$1	338	272	282	17.5490

#otherMatches

#Struct PSSM
oggggggg]e	chr3:142443246-142443502(+)$1	256	111	121	19.0196
"ccclllccc	chr20:62369626-62369881(+)$1	255	20	30	15.9803
44cccggggg	chr1:27022945-27023198(+)$1	253	125	135	19.0196
EE:ccc[ccc	chr5:173043246-173043507(-)$1	261	58	68	16.5686
JJJJJJJJJJ	chr20:35491309-35491602(-)$1	293	22	32	15.1960
ndddd]ccc:	chr20:62371182-62371517(+)$1	335	12	22	15.5882
a[bblllbb]	chr3:52567648-52567895(-)$1	247	2	12	14.3137
B}GGGGGGG~	chr19:1467818-1468084(-)$1	266	150	160	14.7058
ff]eeeeeJJ	chr12:124873017-124873332(-)$1	315	230	240	16.7647
{IIIIIIIII	chrX:21959250-21959566(+)$1	316	20	30	16.4705
hhhhhhhhbb	chr19:14272231-14272572(+)$1	341	62	72	15.2941
pcccgggggg	chr19:58991523-58991791(-)$1	268	194	204	15.3921
55eeeeebb[	chr19:460626-460867(-)$1	241	71	81	15.1960
===="""a!!	chr10:91404103-91404458(-)$1	355	152	162	14.4117
:::BBFFFFF	chr1:1355866-1356128(-)$1	262	6	16	14.9019
mdddd22ggg	chr11:66626979-66627226(-)$1	247	19	29	19.6078
__HHHHHHHH	chr11:66625597-66625830(-)$1	233	214	224	15.3921
GGGGGCCCKK	chr19:1474682-1474941(-)$1	259	3	13	16.7647
2bb]ffffff	chr16:29998086-29998350(+)$1	264	179	189	18.8235
ggggggdddd	chr2:172016826-172017094(-)$1	268	202	212	15.2941
A{DDDD{HHH	chr7:100841518-100841820(-)$1	302	17	27	16.4705
ddCCC}FFFF	chr19:2425964-2426258(-)$1	294	240	250	15.1960
KKDDDDAJJJ	chr17:74533295-74533599(-)$1	304	66	76	17.9411
444dddd]cc	chr17:30264218-30264507(+)$1	289	89	99	19.6078
fffff:CCC{	chr22:24988234-24988502(-)$1	268	31	41	14.4117
8iiiiiiiii	chr3:196675256-196675550(-)$1	294	222	232	15.0980
gggggg::ff	chr6:31762546-31762852(-)$1	306	81	91	15.2941
eeeee::EEE	chr17:79972815-79973074(+)$1	259	86	96	18.1372
DDDD{BBKKB	chr1:27023787-27024050(+)$1	263	87	97	18.3333
22hhhhhhhh	chr1:6505670-6505922(-)$1	252	132	142	15.0980
gggggg]eee	chr14:105911901-105912170(+)$1	269	24	34	14.9019
dmmmmdddd:	chr9:116918129-116918385(+)$1	256	91	101	15.3921
mmdddd]ccc	chr10:103454200-103454468(-)$1	268	142	152	14.3137
eeeooooooe	chr21:45880123-45880386(+)$1	263	216	226	17.0588
e[dddd!!gg	chr9:99212775-99213013(+)$1	238	4	14	16.0784
ffffnnnnnf	chr7:5460710-5460980(-)$1	270	122	132	15.2941
66ggggggg]	chr16:67997747-67997993(-)$1	246	104	114	15.4901
EEEEEKKCCC	chr19:1467729-1467973(-)$1	244	39	49	14.7058
dddd]dddd]	chr20:3451843-3452093(+)$1	250	183	193	17.0588
fffff::ggg	chr9:139701033-139701323(-)$1	290	148	158	15.6862
oggggggg]e	chr3:142443302-142443599(+)$1	297	55	65	19.0196
hhhdddd::E	chr7:127670344-127670597(+)$1	253	220	230	17.9411
eeeooooooe	chr21:45880280-45880535(+)$1	255	59	69	17.0588
g]bbBB{GGG	chr1:2160041-2160332(+)$1	291	115	125	16.2745
]iiiiiiiii	chr19:42401278-42401569(+)$1	291	149	159	14.5098
======bbbb	chr7:150777704-150777985(-)$1	281	163	173	14.0196
hhhhddddff	chr14:103576580-103576828(+)$1	248	63	73	19.6078
EE{JJJJJJJ	chr16:87426116-87426425(+)$1	309	106	116	15.1960
eeeee[ccc[	chr19:59081744-59082004(+)$1	260	45	55	17.5490
ee]=======	chr1:28845117-28845400(+)$1	283	128	138	15.0000
FFFFFFYYEE	chr6:31864774-31865112(-)$1	338	272	282	17.5490

#DB
.))))))).)	chr3:142443246-142443502(+)$1	1	111	121	19.0196
.(((...)))	chr20:62369626-62369881(+)$1	1	20	30	15.9803
..))))))))	chr1:27022945-27023198(+)$1	1	125	135	19.0196
((.(((.(((	chr5:173043246-173043507(-)$1	1	58	68	16.5686
((((((((((	chr20:35491309-35491602(-)$1	1	22	32	15.1960
.)))).))).	chr20:62371182-62371517(+)$1	1	12	22	15.5882
(.((...)).	chr3:52567648-52567895(-)$1	1	2	12	14.3137
).))))))).	chr19:1467818-1468084(-)$1	1	150	160	14.7058
)).)))))))	chr12:124873017-124873332(-)$1	1	230	240	16.7647
.(((((((((	chrX:21959250-21959566(+)$1	1	20	30	16.4705
))))))))))	chr19:14272231-14272572(+)$1	1	62	72	15.2941
.)))))))))	chr19:58991523-58991791(-)$1	1	194	204	15.3921
..)))))((.	chr19:460626-460867(-)$1	1	71	81	15.1960
((((...(..	chr10:91404103-91404458(-)$1	1	152	162	14.4117
...(((((((	chr1:1355866-1356128(-)$1	1	6	16	14.9019
.))))..)))	chr11:66626979-66627226(-)$1	1	19	29	19.6078
..))))))))	chr11:66625597-66625830(-)$1	1	214	224	15.3921
((((((((..	chr19:1474682-1474941(-)$1	1	3	13	16.7647
.)).))))))	chr16:29998086-29998350(+)$1	1	179	189	18.8235
))))))))))	chr2:172016826-172017094(-)$1	1	202	212	15.2941
(.((((.(((	chr7:100841518-100841820(-)$1	1	17	27	16.4705
))))).))))	chr19:2425964-2426258(-)$1	1	240	250	15.1960
..((((((((	chr17:74533295-74533599(-)$1	1	66	76	17.9411
...)))).))	chr17:30264218-30264507(+)$1	1	89	99	19.6078
))))).(((.	chr22:24988234-24988502(-)$1	1	31	41	14.4117
.)))))))))	chr3:196675256-196675550(-)$1	1	222	232	15.0980
))))))..((	chr6:31762546-31762852(-)$1	1	81	91	15.2941
)))))..(((	chr17:79972815-79973074(+)$1	1	86	96	18.1372
((((.((..(	chr1:27023787-27024050(+)$1	1	87	97	18.3333
..))))))))	chr1:6505670-6505922(-)$1	1	132	142	15.0980
)))))).)))	chr14:105911901-105912170(+)$1	1	24	34	14.9019
(....)))).	chr9:116918129-116918385(+)$1	1	91	101	15.3921
..)))).)))	chr10:103454200-103454468(-)$1	1	142	152	14.3137
(((......)	chr21:45880123-45880386(+)$1	1	216	226	17.0588
(.((((..((	chr9:99212775-99213013(+)$1	1	4	14	16.0784
((((.....)	chr7:5460710-5460980(-)$1	1	122	132	15.2941
..))))))).	chr16:67997747-67997993(-)$1	1	104	114	15.4901
(((((..(((	chr19:1467729-1467973(-)$1	1	39	49	14.7058
)))).)))).	chr20:3451843-3452093(+)$1	1	183	193	17.0588
)))))..(((	chr9:139701033-139701323(-)$1	1	148	158	15.6862
.))))))).)	chr3:142443302-142443599(+)$1	1	55	65	19.0196
)))))))..)	chr7:127670344-127670597(+)$1	1	220	230	17.9411
(((......)	chr21:45880280-45880535(+)$1	1	59	69	17.0588
).))((.(((	chr1:2160041-2160332(+)$1	1	115	125	16.2745
.)))))))))	chr19:42401278-42401569(+)$1	1	149	159	14.5098
((((((((((	chr7:150777704-150777985(-)$1	1	163	173	14.0196
))))))))))	chr14:103576580-103576828(+)$1	1	63	73	19.6078
((.(((((((	chr16:87426116-87426425(+)$1	1	106	116	15.1960
(((((.(((.	chr19:59081744-59082004(+)$1	1	45	55	17.5490
)).)))))))	chr1:28845117-28845400(+)$1	1	128	138	15.0000
))))))..))	chr6:31864774-31865112(-)$1	1	272	282	17.5490

#PSSM
G : 0.76	g : 0.07	C : 0.05	U : 0.05	c : 0.01	A : 0.01	
G : 0.86	g : 0.09	A : 0.03	
G : 0.80	U : 0.09	g : 0.07	C : 0.01	
C : 0.84	c : 0.07	G : 0.07	
C : 0.76	U : 0.11	c : 0.07	G : 0.01	A : 0.01	
C : 0.92	c : 0.07	
A : 0.45	U : 0.23	C : 0.11	G : 0.11	g : 0.07	
G : 0.88	g : 0.07	U : 0.01	C : 0.01	
C : 0.78	G : 0.11	g : 0.05	c : 0.01	A : 0.01	
C : 0.43	G : 0.21	U : 0.17	A : 0.09	c : 0.03	g : 0.03	

#score	830.0000000000007
#seq	51
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_CDS_m2_run2.nuc.txt

#NT
CUGC	chr5:176981010-176981307(-)$1	297	149	153	11.9999
CUGC	chr19:42752502-42752752(-)$1	250	186	190	11.9999
CUGC	chr7:228756-229011(+)$1	255	31	35	11.9999
CUGC	chr6:31696672-31696976(-)$1	304	67	71	11.9999
CUGC	chr16:1825053-1825334(+)$1	281	254	258	11.9999
CUGC	chr16:67977008-67977284(-)$1	276	94	98	11.9999
CUGC	chr19:2227961-2228190(+)$1	229	67	71	11.9999
CUGC	chr14:103570900-103571184(+)$1	284	0	4	11.9999
CUGC	chr16:28847458-28847684(+)$1	226	86	90	11.9999
CUGC	chr4:1804588-1804828(+)$1	240	9	13	11.9999
CUGC	chr19:2228085-2228377(+)$1	292	25	29	11.9999
CUGC	chr2:97531857-97532137(-)$1	280	106	110	11.9999
CUGC	chr19:44117443-44117699(-)$1	256	5	9	11.9999
CUGC	chr11:829408-829694(+)$1	286	158	162	11.9999
CUGC	chr5:65364524-65364839(+)$1	315	252	256	11.9999
CUGC	chr11:18034285-18034515(-)$1	230	75	79	11.9999
CUGC	chr17:7232366-7232636(-)$1	270	134	138	11.9999
CUGC	chr22:50658472-50658764(-)$1	292	212	216	11.9999
CUGC	chr2:241895252-241895535(-)$1	283	96	100	11.9999
CUGC	chr14:24780138-24780407(+)$1	269	10	14	11.9999
CUGC	chr2:220412226-220412595(+)$1	369	8	12	11.9999
CUGC	chr20:61915098-61915333(+)$1	235	37	41	11.9999
CUGC	chr3:49723522-49723791(-)$1	269	81	85	11.9999
CUGC	chr12:125270596-125270823(-)$1	227	41	45	11.9999
CUGC	chr21:46876284-46876578(+)$1	294	118	122	11.9999
CUGC	chr11:500573-500861(-)$1	288	131	135	11.9999
CUGC	chr17:39975726-39975992(+)$1	266	125	129	11.9999
CUGC	chr1:110603457-110603751(+)$1	294	200	204	11.9999
CUGC	chr11:68213010-68213305(+)$1	295	102	106	11.9999
cugc	chr4:140651575-140651846(+)$1	271	9	13	11.9999
CUGC	chr22:20073814-20074140(+)$1	326	52	56	11.9999
CUGC	chr9:139904814-139905086(-)$1	272	133	137	11.9999
CUGC	chr21:46876093-46876425(+)$1	332	47	51	11.9999
CUGC	chr4:6290546-6290816(+)$1	270	46	50	11.9999
CUGC	chr11:118984316-118984626(+)$1	310	233	237	11.9999
CUGC	chr11:67771177-67771455(-)$1	278	5	9	11.9999
CUGC	chr7:99755527-99755812(-)$1	285	43	47	11.9999
CUGC	chr11:65325138-65325434(-)$1	296	23	27	11.9999
CUGC	chr13:113761090-113761338(+)$1	248	13	17	11.9999
CUGC	chr10:102729449-102729728(+)$1	279	36	40	11.9999
cugc	chr19:45867656-45867987(-)$1	331	51	55	11.9999
CUGC	chr14:24619403-24619644(+)$1	241	121	125	11.9999
CUGC	chr19:18547563-18547883(-)$1	320	64	68	11.9999
CUGC	chr4:1804529-1804747(+)$1	218	48	52	11.9999
CUGC	chr20:3146516-3146774(-)$1	258	66	70	11.9999
CUGC	chr3:38181965-38182297(+)$1	332	44	48	11.9999
CUGC	chr7:6461241-6461515(-)$1	274	33	37	11.9999
CUGC	chr19:1017263-1017602(-)$1	339	200	204	11.9999
CUGC	chr2:47201938-47202255(+)$1	317	62	66	11.9999
CUGC	chr15:75196903-75197220(-)$1	317	208	212	11.9999
CUGC	chr4:1805438-1805692(+)$1	254	63	67	11.9999
CUGC	chr17:77082264-77082515(+)$1	251	32	36	11.9999
CUGC	chr11:803546-803820(-)$1	274	53	57	11.9999
CUGC	chr2:74757237-74757512(+)$1	275	7	11	11.9999
CUGC	chr7:4829714-4830028(+)$1	314	22	26	11.9999
CUGC	chr17:41150758-41151028(+)$1	270	1	5	11.9999
CUGC	chr20:36014679-36014983(+)$1	304	42	46	11.9999
CUGC	chr6:30457862-30458178(+)$1	316	10	14	11.9999
CUGC	chr1:16270581-16270847(-)$1	266	31	35	11.9999
CUGC	chr16:541164-541458(+)$1	294	73	77	11.9999
CUGC	chr20:2819555-2819841(-)$1	286	167	171	11.9999
CUGC	chr17:80016220-80016606(-)$1	386	11	15	11.9999
CUGC	chr3:12944179-12944438(-)$1	259	8	12	11.9999
CUGC	chr14:24567465-24567756(+)$1	291	120	124	11.9999
CUGC	chr19:2230335-2230586(+)$1	251	24	28	11.9999
CUGC	chr12:125270635-125270877(-)$1	242	22	26	11.9999
CUGC	chr19:11339817-11340086(-)$1	269	28	32	11.9999
CUGC	chr5:1075503-1075792(-)$1	289	143	147	11.9999
CUGC	chr14:105934556-105934788(+)$1	232	36	40	11.9999
CUGC	chr17:3559767-3560065(-)$1	298	90	94	11.9999
CUGC	chr19:42402070-42402307(+)$1	237	55	59	11.9999
CUGC	chr11:67810637-67810940(+)$1	303	48	52	11.9999
cugc	chr19:17439327-17439586(-)$1	259	36	40	11.9999
CUGC	chr14:69619479-69619756(-)$1	277	142	146	11.9999
CUGC	chr1:156213532-156213849(-)$1	317	285	289	11.9999
CUGC	chr14:103568727-103569060(+)$1	333	35	39	11.9999
CUGC	chr1:1417916-1418208(+)$1	292	158	162	11.9999
CUGC	chr20:3735058-3735319(-)$1	261	26	30	11.9999
CUGC	chr21:47565712-47565952(-)$1	240	36	40	11.9999
CUGC	chr11:62156753-62157123(+)$1	370	41	45	11.9999
CUGC	chr19:58991073-58991409(-)$1	336	37	41	11.9999
CUGC	chr9:139904886-139905157(-)$1	271	204	208	11.9999
CUgc	chr11:65339937-65340249(+)$1	312	88	92	11.9999
CUGC	chr5:176916984-176917244(-)$1	260	4	8	11.9999
CUGC	chr14:24780082-24780338(+)$1	256	1	5	11.9999
CUGC	chr21:34941750-34941994(+)$1	244	53	57	11.9999
CUGC	chr22:21348456-21348739(+)$1	283	8	12	11.9999
CUGC	chr8:144917570-144917871(-)$1	301	76	80	11.9999
CUGC	chr11:61197149-61197410(-)$1	261	124	128	11.9999
CUGC	chr9:35092272-35092526(-)$1	254	6	10	11.9999
CUGC	chr16:4744285-4744560(+)$1	275	185	189	11.9999
cugc	chr19:991795-992077(+)$1	282	75	79	11.9999

#otherMatches

#Struct PSSM
eeee	chr17:79987246-79987524(+)$1	278	47	51	11.9999
CC{C	chr5:176981010-176981307(-)$1	297	149	153	11.9999
hhhh	chr19:42752502-42752752(-)$1	250	186	190	11.9999
:ccc	chr7:228756-229011(+)$1	255	31	35	11.9999
dddd	chr6:31696672-31696976(-)$1	304	67	71	11.9999
hhhh	chr16:1825053-1825334(+)$1	281	254	258	11.9999
DDLL	chr16:67977008-67977284(-)$1	276	94	98	11.9999
b[bb	chr19:2227961-2228190(+)$1	229	67	71	11.9999
DDDD	chr14:103570900-103571184(+)$1	284	0	4	11.9999
bb]c	chr16:28847458-28847684(+)$1	226	86	90	11.9999
deee	chr4:1804588-1804828(+)$1	240	9	13	11.9999
LCCC	chr19:2228085-2228377(+)$1	292	25	29	11.9999
eeee	chr2:97531857-97532137(-)$1	280	106	110	11.9999
d!!f	chr19:44117443-44117699(-)$1	256	5	9	11.9999
dddd	chr11:829408-829694(+)$1	286	158	162	11.9999
hh33	chr5:65364524-65364839(+)$1	315	252	256	11.9999
hhhh	chr11:18034285-18034515(-)$1	230	75	79	11.9999
dddd	chr17:7232366-7232636(-)$1	270	134	138	11.9999
[ccc	chr22:50658472-50658764(-)$1	292	212	216	11.9999
d[dd	chr2:241895252-241895535(-)$1	283	96	100	11.9999
HHHH	chr14:24780138-24780407(+)$1	269	10	14	11.9999
gggg	chr2:220412226-220412595(+)$1	369	8	12	11.9999
FFFF	chr20:61915098-61915333(+)$1	235	37	41	11.9999
fff]	chr3:49723522-49723791(-)$1	269	81	85	11.9999
dddd	chr12:125270596-125270823(-)$1	227	41	45	11.9999
d]gg	chr21:46876284-46876578(+)$1	294	118	122	11.9999
eeeb	chr11:500573-500861(-)$1	288	131	135	11.9999
hhh!	chr17:39975726-39975992(+)$1	266	125	129	11.9999
###e	chr1:110603457-110603751(+)$1	294	200	204	11.9999
ffff	chr11:68213010-68213305(+)$1	295	102	106	11.9999
::bb	chr4:140651575-140651846(+)$1	271	9	13	11.9999
DD{C	chr22:20073814-20074140(+)$1	326	52	56	11.9999
dd]c	chr9:139904814-139905086(-)$1	272	133	137	11.9999
$ggg	chr21:46876093-46876425(+)$1	332	47	51	11.9999
hhhh	chr4:6290546-6290816(+)$1	270	46	50	11.9999
CHHH	chr11:118984316-118984626(+)$1	310	233	237	11.9999
GGGO	chr11:67771177-67771455(-)$1	278	5	9	11.9999
::dd	chr7:99755527-99755812(-)$1	285	43	47	11.9999
eeII	chr11:65325138-65325434(-)$1	296	23	27	11.9999
GGGG	chr13:113761090-113761338(+)$1	248	13	17	11.9999
DDDD	chr10:102729449-102729728(+)$1	279	36	40	11.9999
::::	chr19:45867656-45867987(-)$1	331	51	55	11.9999
gg]d	chr14:24619403-24619644(+)$1	241	121	125	11.9999
CDDD	chr19:18547563-18547883(-)$1	320	64	68	11.9999
::cc	chr4:1804529-1804747(+)$1	218	48	52	11.9999
hhhh	chr20:3146516-3146774(-)$1	258	66	70	11.9999
G{A{	chr3:38181965-38182297(+)$1	332	44	48	11.9999
B{BB	chr7:6461241-6461515(-)$1	274	33	37	11.9999
eecc	chr19:1017263-1017602(-)$1	339	200	204	11.9999
c:EE	chr2:47201938-47202255(+)$1	317	62	66	11.9999
E}BB	chr15:75196903-75197220(-)$1	317	208	212	11.9999
CCCH	chr4:1805438-1805692(+)$1	254	63	67	11.9999
ccc]	chr17:77082264-77082515(+)$1	251	32	36	11.9999
====	chr11:803546-803820(-)$1	274	53	57	11.9999
GGGG	chr2:74757237-74757512(+)$1	275	7	11	11.9999
++++	chr7:4829714-4830028(+)$1	314	22	26	11.9999
:ccc	chr17:41150758-41151028(+)$1	270	1	5	11.9999
dd]g	chr20:36014679-36014983(+)$1	304	42	46	11.9999
LLLC	chr6:30457862-30458178(+)$1	316	10	14	11.9999
ccc[	chr1:16270581-16270847(-)$1	266	31	35	11.9999
::::	chr16:541164-541458(+)$1	294	73	77	11.9999
nnbb	chr20:2819555-2819841(-)$1	286	167	171	11.9999
IIII	chr17:80016220-80016606(-)$1	386	11	15	11.9999
ffff	chr3:12944179-12944438(-)$1	259	8	12	11.9999
ccc[	chr14:24567465-24567756(+)$1	291	120	124	11.9999
KKDD	chr19:2230335-2230586(+)$1	251	24	28	11.9999
DDbb	chr12:125270635-125270877(-)$1	242	22	26	11.9999
ccco	chr19:11339817-11340086(-)$1	269	28	32	11.9999
e$$$	chr5:1075503-1075792(-)$1	289	143	147	11.9999
mma]	chr14:105934556-105934788(+)$1	232	36	40	11.9999
oooe	chr17:3559767-3560065(-)$1	298	90	94	11.9999
fff]	chr19:42402070-42402307(+)$1	237	55	59	11.9999
====	chr11:67810637-67810940(+)$1	303	48	52	11.9999
ccmm	chr19:17439327-17439586(-)$1	259	36	40	11.9999
ffdd	chr14:69619479-69619756(-)$1	277	142	146	11.9999
FFFF	chr1:156213532-156213849(-)$1	317	285	289	11.9999
ccdd	chr14:103568727-103569060(+)$1	333	35	39	11.9999
a]cc	chr1:1417916-1418208(+)$1	292	158	162	11.9999
gggg	chr20:3735058-3735319(-)$1	261	26	30	11.9999
hhhh	chr21:47565712-47565952(-)$1	240	36	40	11.9999
FFFM	chr11:62156753-62157123(+)$1	370	41	45	11.9999
::::	chr19:58991073-58991409(-)$1	336	37	41	11.9999
ffff	chr9:139904886-139905157(-)$1	271	204	208	11.9999
F{CC	chr11:65339937-65340249(+)$1	312	88	92	11.9999
LLBB	chr5:176916984-176917244(-)$1	260	4	8	11.9999
EEEE	chr14:24780082-24780338(+)$1	256	1	5	11.9999
::::	chr21:34941750-34941994(+)$1	244	53	57	11.9999
GGGG	chr22:21348456-21348739(+)$1	283	8	12	11.9999
lldd	chr8:144917570-144917871(-)$1	301	76	80	11.9999
eeee	chr11:61197149-61197410(-)$1	261	124	128	11.9999
::::	chr9:35092272-35092526(-)$1	254	6	10	11.9999
bb[f	chr16:4744285-4744560(+)$1	275	185	189	11.9999
gggg	chr19:991795-992077(+)$1	282	75	79	11.9999

#DB
))))	chr17:79987246-79987524(+)$1	1	47	51	11.9999
((.(	chr5:176981010-176981307(-)$1	1	149	153	11.9999
((((	chr19:42752502-42752752(-)$1	1	186	190	11.9999
.(((	chr7:228756-229011(+)$1	1	31	35	11.9999
((((	chr6:31696672-31696976(-)$1	1	67	71	11.9999
))))	chr16:1825053-1825334(+)$1	1	254	258	11.9999
((..	chr16:67977008-67977284(-)$1	1	94	98	11.9999
(.((	chr19:2227961-2228190(+)$1	1	67	71	11.9999
((((	chr14:103570900-103571184(+)$1	1	0	4	11.9999
)).)	chr16:28847458-28847684(+)$1	1	86	90	11.9999
((((	chr4:1804588-1804828(+)$1	1	9	13	11.9999
.(((	chr19:2228085-2228377(+)$1	1	25	29	11.9999
((((	chr2:97531857-97532137(-)$1	1	106	110	11.9999
(..(	chr19:44117443-44117699(-)$1	1	5	9	11.9999
))))	chr11:829408-829694(+)$1	1	158	162	11.9999
))..	chr5:65364524-65364839(+)$1	1	252	256	11.9999
((((	chr11:18034285-18034515(-)$1	1	75	79	11.9999
))))	chr17:7232366-7232636(-)$1	1	134	138	11.9999
.(((	chr22:50658472-50658764(-)$1	1	212	216	11.9999
(.((	chr2:241895252-241895535(-)$1	1	96	100	11.9999
((((	chr14:24780138-24780407(+)$1	1	10	14	11.9999
((((	chr2:220412226-220412595(+)$1	1	8	12	11.9999
((((	chr20:61915098-61915333(+)$1	1	37	41	11.9999
))).	chr3:49723522-49723791(-)$1	1	81	85	11.9999
((((	chr12:125270596-125270823(-)$1	1	41	45	11.9999
).))	chr21:46876284-46876578(+)$1	1	118	122	11.9999
))))	chr11:500573-500861(-)$1	1	131	135	11.9999
(((.	chr17:39975726-39975992(+)$1	1	125	129	11.9999
...(	chr1:110603457-110603751(+)$1	1	200	204	11.9999
((((	chr11:68213010-68213305(+)$1	1	102	106	11.9999
..((	chr4:140651575-140651846(+)$1	1	9	13	11.9999
((.(	chr22:20073814-20074140(+)$1	1	52	56	11.9999
)).)	chr9:139904814-139905086(-)$1	1	133	137	11.9999
.(((	chr21:46876093-46876425(+)$1	1	47	51	11.9999
((((	chr4:6290546-6290816(+)$1	1	46	50	11.9999
))))	chr11:118984316-118984626(+)$1	1	233	237	11.9999
(((.	chr11:67771177-67771455(-)$1	1	5	9	11.9999
..((	chr7:99755527-99755812(-)$1	1	43	47	11.9999
))((	chr11:65325138-65325434(-)$1	1	23	27	11.9999
((((	chr13:113761090-113761338(+)$1	1	13	17	11.9999
((((	chr10:102729449-102729728(+)$1	1	36	40	11.9999
....	chr19:45867656-45867987(-)$1	1	51	55	11.9999
)).)	chr14:24619403-24619644(+)$1	1	121	125	11.9999
((((	chr19:18547563-18547883(-)$1	1	64	68	11.9999
..((	chr4:1804529-1804747(+)$1	1	48	52	11.9999
((((	chr20:3146516-3146774(-)$1	1	66	70	11.9999
(.(.	chr3:38181965-38182297(+)$1	1	44	48	11.9999
(.((	chr7:6461241-6461515(-)$1	1	33	37	11.9999
))((	chr19:1017263-1017602(-)$1	1	200	204	11.9999
).((	chr2:47201938-47202255(+)$1	1	62	66	11.9999
).))	chr15:75196903-75197220(-)$1	1	208	212	11.9999
((((	chr4:1805438-1805692(+)$1	1	63	67	11.9999
))).	chr17:77082264-77082515(+)$1	1	32	36	11.9999
((((	chr11:803546-803820(-)$1	1	53	57	11.9999
((((	chr2:74757237-74757512(+)$1	1	7	11	11.9999
....	chr7:4829714-4830028(+)$1	1	22	26	11.9999
.(((	chr17:41150758-41151028(+)$1	1	1	5	11.9999
)).)	chr20:36014679-36014983(+)$1	1	42	46	11.9999
...(	chr6:30457862-30458178(+)$1	1	10	14	11.9999
(((.	chr1:16270581-16270847(-)$1	1	31	35	11.9999
....	chr16:541164-541458(+)$1	1	73	77	11.9999
..))	chr20:2819555-2819841(-)$1	1	167	171	11.9999
((((	chr17:80016220-80016606(-)$1	1	11	15	11.9999
((((	chr3:12944179-12944438(-)$1	1	8	12	11.9999
(((.	chr14:24567465-24567756(+)$1	1	120	124	11.9999
..((	chr19:2230335-2230586(+)$1	1	24	28	11.9999
((((	chr12:125270635-125270877(-)$1	1	22	26	11.9999
(((.	chr19:11339817-11340086(-)$1	1	28	32	11.9999
(...	chr5:1075503-1075792(-)$1	1	143	147	11.9999
..).	chr14:105934556-105934788(+)$1	1	36	40	11.9999
...)	chr17:3559767-3560065(-)$1	1	90	94	11.9999
))).	chr19:42402070-42402307(+)$1	1	55	59	11.9999
((((	chr11:67810637-67810940(+)$1	1	48	52	11.9999
((..	chr19:17439327-17439586(-)$1	1	36	40	11.9999
))((	chr14:69619479-69619756(-)$1	1	142	146	11.9999
))))	chr1:156213532-156213849(-)$1	1	285	289	11.9999
((((	chr14:103568727-103569060(+)$1	1	35	39	11.9999
).))	chr1:1417916-1418208(+)$1	1	158	162	11.9999
((((	chr20:3735058-3735319(-)$1	1	26	30	11.9999
))))	chr21:47565712-47565952(-)$1	1	36	40	11.9999
(((.	chr11:62156753-62157123(+)$1	1	41	45	11.9999
....	chr19:58991073-58991409(-)$1	1	37	41	11.9999
))))	chr9:139904886-139905157(-)$1	1	204	208	11.9999
(.((	chr11:65339937-65340249(+)$1	1	88	92	11.9999
..((	chr5:176916984-176917244(-)$1	1	4	8	11.9999
((((	chr14:24780082-24780338(+)$1	1	1	5	11.9999
....	chr21:34941750-34941994(+)$1	1	53	57	11.9999
((((	chr22:21348456-21348739(+)$1	1	8	12	11.9999
..))	chr8:144917570-144917871(-)$1	1	76	80	11.9999
))))	chr11:61197149-61197410(-)$1	1	124	128	11.9999
....	chr9:35092272-35092526(-)$1	1	6	10	11.9999
((.(	chr16:4744285-4744560(+)$1	1	185	189	11.9999
((((	chr19:991795-992077(+)$1	1	75	79	11.9999

#PSSM
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
G : 0.94	g : 0.05	
C : 0.94	c : 0.05	

#score	1115.9999999999998
#seq	93
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_transcript_m1_run1.nuc.txt

#NT
GGA	chr6:33179559-33179813(+)$1	254	20	23	8.9999
GGA	chr15:91419534-91419784(+)$1	250	39	42	8.9999
GGA	chr6:159190870-159191129(-)$1	259	27	30	8.9999
GGA	chr6:33169862-33170103(+)$1	241	8	11	8.9999
GGA	chr19:11224338-11224603(+)$1	265	16	19	8.9999
GGA	chr3:9475411-9475664(+)$1	253	24	27	8.9999
GGA	chr19:14580867-14581102(+)$1	235	20	23	8.9999
GGA	chr19:1914824-1915095(+)$1	271	219	222	8.9999
gga	chr13:46948604-46948826(-)$1	222	2	5	8.9999
GGA	chr12:122337391-122337662(+)$1	271	91	94	8.9999
GGA	chr2:242181928-242182251(-)$1	323	10	13	8.9999
GGA	chr19:45898504-45898776(-)$1	272	108	111	8.9999
GGA	chr6:36938148-36938407(-)$1	259	24	27	8.9999
GGA	chr17:1548626-1548909(-)$1	283	31	34	8.9999
gga	chr11:62531887-62532153(+)$1	266	20	23	8.9999
GGA	chr3:5021464-5021705(+)$1	241	5	8	8.9999
GGA	chr6:31607996-31608233(-)$1	237	14	17	8.9999
GGA	chr16:89720188-89720482(-)$1	294	70	73	8.9999
GGA	chr5:6604706-6604960(-)$1	254	108	111	8.9999
gga	chr19:2210214-2210469(+)$1	255	61	64	8.9999
gga	chr16:88719727-88719970(-)$1	243	57	60	8.9999
GGA	chr17:73127100-73127347(-)$1	247	12	15	8.9999
GGA	chr14:100820088-100820360(-)$1	272	47	50	8.9999
GGA	chr1:146737434-146737669(+)$1	235	3	6	8.9999
GGA	chr2:54159773-54160044(-)$1	271	141	144	8.9999
GGA	chr17:54972884-54973147(-)$1	263	8	11	8.9999
GGA	chr19:19638348-19638641(+)$1	293	0	3	8.9999
GGA	chr8:117868376-117868635(-)$1	259	1	4	8.9999
GGA	chr2:97527093-97527350(-)$1	257	73	76	8.9999
GGA	chr20:402590-402902(+)$1	312	6	9	8.9999
GGA	chr1:144922151-144922399(-)$1	248	27	30	8.9999
GGA	chr1:110583121-110583396(+)$1	275	78	81	8.9999
GGA	chr1:1425509-1425742(+)$1	233	56	59	8.9999
GGA	chr6:136592969-136593201(-)$1	232	13	16	8.9999
GGA	chr18:47809841-47810095(-)$1	254	2	5	8.9999
GGA	chr11:117057939-117058193(+)$1	254	21	24	8.9999
GGA	chr17:76121865-76122121(-)$1	256	8	11	8.9999
GGA	chr2:97559833-97560070(-)$1	237	0	3	8.9999
GGA	chrX:153677882-153678148(+)$1	266	15	18	8.9999
GGA	chr8:144900599-144900840(-)$1	241	25	28	8.9999
GGA	chr7:157151092-157151343(+)$1	251	18	21	8.9999
GGA	chr1:1458737-1458999(+)$1	262	182	185	8.9999
GGA	chr22:20891394-20891635(+)$1	241	12	15	8.9999
GGA	chr15:34651818-34652136(-)$1	318	13	16	8.9999
GGA	chr19:39924130-39924365(-)$1	235	71	74	8.9999
GGA	chr17:79177281-79177561(-)$1	280	10	13	8.9999
GGA	chr16:66764069-66764278(-)$1	209	74	77	8.9999
GGA	chr12:54675770-54676006(+)$1	236	10	13	8.9999
GGA	chr17:27434119-27434368(-)$1	249	115	118	8.9999
GGA	chr17:80442141-80442391(+)$1	250	79	82	8.9999
GGA	chrX:152956599-152956843(+)$1	244	13	16	8.9999
GGA	chr5:178032221-178032536(-)$1	315	2	5	8.9999
GGA	chr18:47812190-47812450(-)$1	260	82	85	8.9999
GGA	chr10:135273241-135273476(+)$1	235	23	26	8.9999
GGA	chr17:73491210-73491468(+)$1	258	17	20	8.9999
GGA	chr17:8110089-8110362(-)$1	273	197	200	8.9999
GGA	chr3:172480580-172480839(+)$1	259	128	131	8.9999
GGA	chr21:45173307-45173565(+)$1	258	79	82	8.9999
GGA	chr15:83481696-83481974(+)$1	278	7	10	8.9999
GGA	chr2:97544112-97544403(-)$1	291	30	33	8.9999
GGA	chr16:1506106-1506361(-)$1	255	20	23	8.9999
GGA	chr1:42654490-42654747(-)$1	257	20	23	8.9999
GGA	chr16:2114113-2114374(+)$1	261	55	58	8.9999
ggA	chr20:62371838-62372083(+)$1	245	9	12	8.9999
GGA	chr20:39657882-39658130(+)$1	248	48	51	8.9999
GGA	chr17:7403799-7404049(+)$1	250	16	19	8.9999
GGA	chr2:234078477-234078741(+)$1	264	41	44	8.9999
GGA	chr19:19015567-19015818(-)$1	251	39	42	8.9999
GGA	chr3:142747178-142747402(+)$1	224	47	50	8.9999
GGA	chr19:36636907-36637183(+)$1	276	4	7	8.9999
GGA	chr7:5569679-5569974(-)$1	295	8	11	8.9999
GGA	chr20:61914584-61914842(+)$1	258	17	20	8.9999
GGA	chr19:18538795-18539055(+)$1	260	14	17	8.9999
GGA	chr10:79800251-79800470(+)$1	219	55	58	8.9999
GGA	chr11:5367427-5367744(-)$1	317	185	188	8.9999
GGA	chr22:42557260-42557556(-)$1	296	122	125	8.9999
gga	chr22:43570478-43570769(-)$1	291	27	30	8.9999
GGA	chr16:30596468-30596738(-)$1	270	33	36	8.9999
GGA	chr17:4793655-4793878(+)$1	223	1	4	8.9999
GGA	chr11:63719930-63720189(+)$1	259	32	35	8.9999
GGA	chr22:21354592-21354875(-)$1	283	24	27	8.9999
gga	chr1:228680596-228680879(+)$1	283	58	61	8.9999
GGA	chr5:137295749-137296042(-)$1	293	54	57	8.9999
GGA	chr2:130930366-130930620(-)$1	254	175	178	8.9999
GGA	chr14:102552645-102552863(-)$1	218	73	76	8.9999
GGA	chr5:140048499-140048796(+)$1	297	48	51	8.9999
GGA	chr16:30976768-30977008(+)$1	240	2	5	8.9999
GGA	chr9:71869011-71869247(+)$1	236	18	21	8.9999
GGA	chr16:88943556-88943831(-)$1	275	28	31	8.9999
GGA	chr3:15754990-15755295(-)$1	305	146	149	8.9999
GGA	chr9:114804133-114804405(-)$1	272	15	18	8.9999
GGA	chr1:40872266-40872513(+)$1	247	159	162	8.9999
GGA	chr11:65630917-65631198(+)$1	281	9	12	8.9999
GGA	chr9:139726022-139726262(+)$1	240	33	36	8.9999
GGA	chr1:115277047-115277303(-)$1	256	67	70	8.9999
GGA	chr1:215792080-215792336(+)$1	256	201	204	8.9999
GGA	chr5:170819563-170819805(+)$1	242	154	157	8.9999
GGA	chr17:7126277-7126532(+)$1	255	121	124	8.9999

#otherMatches

#Struct PSSM
fdd	chr5:126161512-126161824(+)$1	312	121	124	8.9999
FFF	chr6:33179559-33179813(+)$1	254	20	23	8.9999
HHH	chr15:91419534-91419784(+)$1	250	39	42	8.9999
bb!	chr6:159190870-159191129(-)$1	259	27	30	8.9999
BB{	chr6:33169862-33170103(+)$1	241	8	11	8.9999
fff	chr19:11224338-11224603(+)$1	265	16	19	8.9999
g[d	chr3:9475411-9475664(+)$1	253	24	27	8.9999
ggd	chr19:14580867-14581102(+)$1	235	20	23	8.9999
ff:	chr19:1914824-1915095(+)$1	271	219	222	8.9999
GGG	chr13:46948604-46948826(-)$1	222	2	5	8.9999
fff	chr12:122337391-122337662(+)$1	271	91	94	8.9999
FFF	chr2:242181928-242182251(-)$1	323	10	13	8.9999
000	chr19:45898504-45898776(-)$1	272	108	111	8.9999
BB{	chr6:36938148-36938407(-)$1	259	24	27	8.9999
mcc	chr17:1548626-1548909(-)$1	283	31	34	8.9999
GGG	chr11:62531887-62532153(+)$1	266	20	23	8.9999
FF:	chr3:5021464-5021705(+)$1	241	5	8	8.9999
FFF	chr6:31607996-31608233(-)$1	237	14	17	8.9999
ccc	chr16:89720188-89720482(-)$1	294	70	73	8.9999
ccc	chr5:6604706-6604960(-)$1	254	108	111	8.9999
]cc	chr19:2210214-2210469(+)$1	255	61	64	8.9999
dd:	chr16:88719727-88719970(-)$1	243	57	60	8.9999
ttt	chr17:73127100-73127347(-)$1	247	12	15	8.9999
bb:	chr14:100820088-100820360(-)$1	272	47	50	8.9999
EEE	chr1:146737434-146737669(+)$1	235	3	6	8.9999
cee	chr2:54159773-54160044(-)$1	271	141	144	8.9999
CCC	chr17:54972884-54973147(-)$1	263	8	11	8.9999
:::	chr19:19638348-19638641(+)$1	293	0	3	8.9999
ccc	chr8:117868376-117868635(-)$1	259	1	4	8.9999
cll	chr2:97527093-97527350(-)$1	257	73	76	8.9999
mmm	chr20:402590-402902(+)$1	312	6	9	8.9999
DDD	chr1:144922151-144922399(-)$1	248	27	30	8.9999
ldd	chr1:110583121-110583396(+)$1	275	78	81	8.9999
mmg	chr1:1425509-1425742(+)$1	233	56	59	8.9999
""d	chr6:136592969-136593201(-)$1	232	13	16	8.9999
dd!	chr18:47809841-47810095(-)$1	254	2	5	8.9999
FFF	chr11:117057939-117058193(+)$1	254	21	24	8.9999
DDD	chr17:76121865-76122121(-)$1	256	8	11	8.9999
BBL	chr2:97559833-97560070(-)$1	237	0	3	8.9999
add	chrX:153677882-153678148(+)$1	266	15	18	8.9999
hhh	chr8:144900599-144900840(-)$1	241	25	28	8.9999
cc:	chr7:157151092-157151343(+)$1	251	18	21	8.9999
4cc	chr1:1458737-1458999(+)$1	262	182	185	8.9999
:::	chr22:20891394-20891635(+)$1	241	12	15	8.9999
ccc	chr15:34651818-34652136(-)$1	318	13	16	8.9999
]cc	chr19:39924130-39924365(-)$1	235	71	74	8.9999
eee	chr17:79177281-79177561(-)$1	280	10	13	8.9999
a[b	chr16:66764069-66764278(-)$1	209	74	77	8.9999
bb'	chr12:54675770-54676006(+)$1	236	10	13	8.9999
FFF	chr17:27434119-27434368(-)$1	249	115	118	8.9999
]a:	chr17:80442141-80442391(+)$1	250	79	82	8.9999
mmm	chrX:152956599-152956843(+)$1	244	13	16	8.9999
dd"	chr5:178032221-178032536(-)$1	315	2	5	8.9999
ggg	chr18:47812190-47812450(-)$1	260	82	85	8.9999
HH:	chr10:135273241-135273476(+)$1	235	23	26	8.9999
ggg	chr17:73491210-73491468(+)$1	258	17	20	8.9999
hhh	chr17:8110089-8110362(-)$1	273	197	200	8.9999
e::	chr3:172480580-172480839(+)$1	259	128	131	8.9999
bb]	chr21:45173307-45173565(+)$1	258	79	82	8.9999
FFF	chr15:83481696-83481974(+)$1	278	7	10	8.9999
DDL	chr2:97544112-97544403(-)$1	291	30	33	8.9999
RRR	chr16:1506106-1506361(-)$1	255	20	23	8.9999
eee	chr1:42654490-42654747(-)$1	257	20	23	8.9999
eec	chr16:2114113-2114374(+)$1	261	55	58	8.9999
bb[	chr20:62371838-62372083(+)$1	245	9	12	8.9999
FF:	chr20:39657882-39658130(+)$1	248	48	51	8.9999
ooo	chr17:7403799-7404049(+)$1	250	16	19	8.9999
ddd	chr2:234078477-234078741(+)$1	264	41	44	8.9999
bnn	chr19:19015567-19015818(-)$1	251	39	42	8.9999
EEK	chr3:142747178-142747402(+)$1	224	47	50	8.9999
:::	chr19:36636907-36637183(+)$1	276	4	7	8.9999
ggg	chr7:5569679-5569974(-)$1	295	8	11	8.9999
ggg	chr20:61914584-61914842(+)$1	258	17	20	8.9999
###	chr19:18538795-18539055(+)$1	260	14	17	8.9999
gg"	chr10:79800251-79800470(+)$1	219	55	58	8.9999
iii	chr11:5367427-5367744(-)$1	317	185	188	8.9999
CCM	chr22:42557260-42557556(-)$1	296	122	125	8.9999
ddd	chr22:43570478-43570769(-)$1	291	27	30	8.9999
ddd	chr16:30596468-30596738(-)$1	270	33	36	8.9999
:::	chr17:4793655-4793878(+)$1	223	1	4	8.9999
cc%	chr11:63719930-63720189(+)$1	259	32	35	8.9999
ee]	chr22:21354592-21354875(-)$1	283	24	27	8.9999
C{B	chr1:228680596-228680879(+)$1	283	58	61	8.9999
d:C	chr5:137295749-137296042(-)$1	293	54	57	8.9999
ddd	chr2:130930366-130930620(-)$1	254	175	178	8.9999
fff	chr14:102552645-102552863(-)$1	218	73	76	8.9999
a[c	chr5:140048499-140048796(+)$1	297	48	51	8.9999
cco	chr16:30976768-30977008(+)$1	240	2	5	8.9999
bmm	chr9:71869011-71869247(+)$1	236	18	21	8.9999
IIR	chr16:88943556-88943831(-)$1	275	28	31	8.9999
dd]	chr3:15754990-15755295(-)$1	305	146	149	8.9999
FFF	chr9:114804133-114804405(-)$1	272	15	18	8.9999
bff	chr1:40872266-40872513(+)$1	247	159	162	8.9999
dpp	chr11:65630917-65631198(+)$1	281	9	12	8.9999
eee	chr9:139726022-139726262(+)$1	240	33	36	8.9999
DLL	chr1:115277047-115277303(-)$1	256	67	70	8.9999
hh2	chr1:215792080-215792336(+)$1	256	201	204	8.9999
a]b	chr5:170819563-170819805(+)$1	242	154	157	8.9999
fff	chr17:7126277-7126532(+)$1	255	121	124	8.9999

#DB
)))	chr5:126161512-126161824(+)$1	1	121	124	8.9999
(((	chr6:33179559-33179813(+)$1	1	20	23	8.9999
(((	chr15:91419534-91419784(+)$1	1	39	42	8.9999
((.	chr6:159190870-159191129(-)$1	1	27	30	8.9999
((.	chr6:33169862-33170103(+)$1	1	8	11	8.9999
(((	chr19:11224338-11224603(+)$1	1	16	19	8.9999
(.(	chr3:9475411-9475664(+)$1	1	24	27	8.9999
(((	chr19:14580867-14581102(+)$1	1	20	23	8.9999
)).	chr19:1914824-1915095(+)$1	1	219	222	8.9999
(((	chr13:46948604-46948826(-)$1	1	2	5	8.9999
)))	chr12:122337391-122337662(+)$1	1	91	94	8.9999
(((	chr2:242181928-242182251(-)$1	1	10	13	8.9999
...	chr19:45898504-45898776(-)$1	1	108	111	8.9999
((.	chr6:36938148-36938407(-)$1	1	24	27	8.9999
.))	chr17:1548626-1548909(-)$1	1	31	34	8.9999
(((	chr11:62531887-62532153(+)$1	1	20	23	8.9999
((.	chr3:5021464-5021705(+)$1	1	5	8	8.9999
(((	chr6:31607996-31608233(-)$1	1	14	17	8.9999
)))	chr16:89720188-89720482(-)$1	1	70	73	8.9999
)))	chr5:6604706-6604960(-)$1	1	108	111	8.9999
.))	chr19:2210214-2210469(+)$1	1	61	64	8.9999
)).	chr16:88719727-88719970(-)$1	1	57	60	8.9999
...	chr17:73127100-73127347(-)$1	1	12	15	8.9999
)).	chr14:100820088-100820360(-)$1	1	47	50	8.9999
(((	chr1:146737434-146737669(+)$1	1	3	6	8.9999
)))	chr2:54159773-54160044(-)$1	1	141	144	8.9999
(((	chr17:54972884-54973147(-)$1	1	8	11	8.9999
...	chr19:19638348-19638641(+)$1	1	0	3	8.9999
(((	chr8:117868376-117868635(-)$1	1	1	4	8.9999
(..	chr2:97527093-97527350(-)$1	1	73	76	8.9999
...	chr20:402590-402902(+)$1	1	6	9	8.9999
(((	chr1:144922151-144922399(-)$1	1	27	30	8.9999
.))	chr1:110583121-110583396(+)$1	1	78	81	8.9999
..)	chr1:1425509-1425742(+)$1	1	56	59	8.9999
..(	chr6:136592969-136593201(-)$1	1	13	16	8.9999
((.	chr18:47809841-47810095(-)$1	1	2	5	8.9999
(((	chr11:117057939-117058193(+)$1	1	21	24	8.9999
(((	chr17:76121865-76122121(-)$1	1	8	11	8.9999
((.	chr2:97559833-97560070(-)$1	1	0	3	8.9999
)))	chrX:153677882-153678148(+)$1	1	15	18	8.9999
(((	chr8:144900599-144900840(-)$1	1	25	28	8.9999
)).	chr7:157151092-157151343(+)$1	1	18	21	8.9999
.))	chr1:1458737-1458999(+)$1	1	182	185	8.9999
...	chr22:20891394-20891635(+)$1	1	12	15	8.9999
(((	chr15:34651818-34652136(-)$1	1	13	16	8.9999
.))	chr19:39924130-39924365(-)$1	1	71	74	8.9999
(((	chr17:79177281-79177561(-)$1	1	10	13	8.9999
(.(	chr16:66764069-66764278(-)$1	1	74	77	8.9999
((.	chr12:54675770-54676006(+)$1	1	10	13	8.9999
)))	chr17:27434119-27434368(-)$1	1	115	118	8.9999
.).	chr17:80442141-80442391(+)$1	1	79	82	8.9999
...	chrX:152956599-152956843(+)$1	1	13	16	8.9999
((.	chr5:178032221-178032536(-)$1	1	2	5	8.9999
(((	chr18:47812190-47812450(-)$1	1	82	85	8.9999
((.	chr10:135273241-135273476(+)$1	1	23	26	8.9999
(((	chr17:73491210-73491468(+)$1	1	17	20	8.9999
)))	chr17:8110089-8110362(-)$1	1	197	200	8.9999
)..	chr3:172480580-172480839(+)$1	1	128	131	8.9999
)).	chr21:45173307-45173565(+)$1	1	79	82	8.9999
(((	chr15:83481696-83481974(+)$1	1	7	10	8.9999
((.	chr2:97544112-97544403(-)$1	1	30	33	8.9999
...	chr16:1506106-1506361(-)$1	1	20	23	8.9999
)))	chr1:42654490-42654747(-)$1	1	20	23	8.9999
)))	chr16:2114113-2114374(+)$1	1	55	58	8.9999
((.	chr20:62371838-62372083(+)$1	1	9	12	8.9999
((.	chr20:39657882-39658130(+)$1	1	48	51	8.9999
...	chr17:7403799-7404049(+)$1	1	16	19	8.9999
)))	chr2:234078477-234078741(+)$1	1	41	44	8.9999
(..	chr19:19015567-19015818(-)$1	1	39	42	8.9999
((.	chr3:142747178-142747402(+)$1	1	47	50	8.9999
...	chr19:36636907-36637183(+)$1	1	4	7	8.9999
(((	chr7:5569679-5569974(-)$1	1	8	11	8.9999
(((	chr20:61914584-61914842(+)$1	1	17	20	8.9999
...	chr19:18538795-18539055(+)$1	1	14	17	8.9999
((.	chr10:79800251-79800470(+)$1	1	55	58	8.9999
)))	chr11:5367427-5367744(-)$1	1	185	188	8.9999
((.	chr22:42557260-42557556(-)$1	1	122	125	8.9999
)))	chr22:43570478-43570769(-)$1	1	27	30	8.9999
(((	chr16:30596468-30596738(-)$1	1	33	36	8.9999
...	chr17:4793655-4793878(+)$1	1	1	4	8.9999
((.	chr11:63719930-63720189(+)$1	1	32	35	8.9999
)).	chr22:21354592-21354875(-)$1	1	24	27	8.9999
(.(	chr1:228680596-228680879(+)$1	1	58	61	8.9999
).(	chr5:137295749-137296042(-)$1	1	54	57	8.9999
(((	chr2:130930366-130930620(-)$1	1	175	178	8.9999
)))	chr14:102552645-102552863(-)$1	1	73	76	8.9999
(.(	chr5:140048499-140048796(+)$1	1	48	51	8.9999
((.	chr16:30976768-30977008(+)$1	1	2	5	8.9999
(..	chr9:71869011-71869247(+)$1	1	18	21	8.9999
((.	chr16:88943556-88943831(-)$1	1	28	31	8.9999
)).	chr3:15754990-15755295(-)$1	1	146	149	8.9999
(((	chr9:114804133-114804405(-)$1	1	15	18	8.9999
)((	chr1:40872266-40872513(+)$1	1	159	162	8.9999
(..	chr11:65630917-65631198(+)$1	1	9	12	8.9999
(((	chr9:139726022-139726262(+)$1	1	33	36	8.9999
(..	chr1:115277047-115277303(-)$1	1	67	70	8.9999
)).	chr1:215792080-215792336(+)$1	1	201	204	8.9999
).)	chr5:170819563-170819805(+)$1	1	154	157	8.9999
(((	chr17:7126277-7126532(+)$1	1	121	124	8.9999

#PSSM
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	
A : 0.93	a : 0.06	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_transcript_m1_run1.nuc.txt

#NT
CAAUGAACAAG	chrM:13266-13496(+)$1	230	123	134	16.5454
CAAAGAAGAAG	chr2:55771958-55772236(+)$1	278	161	172	12.7272
AAAUGAAUUAC	chr7:158485905-158486185(-)$1	280	22	33	12.8181
gaaugaaaaac	chr4:770808-771123(-)$1	315	239	250	17.0000
cacugaaaaaa	chr11:65267373-65267586(+)$1	213	77	88	13.3636
CGAUGAAGAAA	chr16:8997030-8997358(-)$1	328	146	157	12.7272
AAAUAAACAUU	chr17:56080818-56081051(-)$1	233	174	185	10.4545
UAAUGAAACAU	chr6:35837484-35837745(-)$1	261	185	196	11.2727
caaugaggaau	chr10:18856331-18856616(-)$1	285	25	36	11.7272
AAAUGUAUAAC	chr8:101725257-101725496(-)$1	239	28	39	13.0000
AAACGAAAAAG	chr4:68383826-68384144(-)$1	318	251	262	14.8181
GAAUGAAGAGC	chr12:6687155-6687403(-)$1	248	119	130	12.3636
AAAAGAGCAAA	chr15:20625771-20626062(-)$1	291	167	178	12.6363
gaaugaaaaaa	chr7:119433270-119433519(-)$1	249	5	16	18.0909
CAGUGAAGAAG	chr8:91283668-91283972(+)$1	304	135	146	11.3636
AAAGGAAAAAG	chr12:6692404-6692644(-)$1	240	223	234	15.0000
aaagaaacaaa	chr8:91384981-91385265(+)$1	284	131	142	12.0000
aaaagaacuaa	chr8:91269600-91269874(+)$1	274	159	170	12.0909
GAAUGAAAAAC	chr7:77378758-77379101(+)$1	343	64	75	17.0000
aaaugaauauc	chr5:171368129-171368428(-)$1	299	155	166	13.5454
AAAUGAAAGAA	chr1:22033182-22033428(-)$1	246	86	97	15.2727
aauugaaaaau	chr18:9254585-9254877(+)$1	292	103	114	13.8181
AAAAGCACaaa	chr21:34921813-34922083(+)$1	270	58	69	12.4545
AAAUGAAAAAG	chr1:171526286-171526511(+)$1	225	112	123	18.6363
AAAUGCCCAAA	chr11:62298842-62299120(-)$1	278	236	247	11.6363
AGAUGAAGAAA	chr2:190339931-190340257(+)$1	326	64	75	14.7272
AAAUGAAGAUC	chr11:62284793-62285044(-)$1	251	134	145	14.2727
AAAUGAAGAUC	chr11:62284844-62285115(-)$1	271	205	216	14.2727
aaaucaucaAA	chr6:10940969-10941272(+)$1	303	90	101	11.3636
gaaggaacaaa	chr3:6618194-6618466(+)$1	272	177	188	14.3636
GAAUUAAAAAA	chr8:53569110-53569406(-)$1	296	63	74	13.9090
AAAAGAAAAAC	chr11:11964381-11964703(+)$1	322	289	300	15.5454
aaauagacaaa	chr8:91386277-91386581(+)$1	304	41	52	11.5454
AAAUGAACAGU	chr1:214816305-214816544(+)$1	239	190	201	14.3636
gaaugacaaac	chr8:91383047-91383334(+)$1	287	39	50	12.9999
aaaucaagaag	chr16:47328272-47328575(-)$1	303	16	27	13.7272
UAAUGAAAAAA	chr5:33467644-33467905(+)$1	261	166	177	17.2727
AAAUUAGCAAA	chr5:72286241-72286543(+)$1	302	106	117	11.6363
GAAUGAGAAAU	chr21:38528976-38529280(+)$1	304	62	73	12.7272
ACAUGAAAAAA	chr3:37366942-37367158(+)$1	216	7	18	15.2727
CAAUGAACAAG	chrM:13255-13466(+)$1	211	134	145	16.5454
gaauggagaau	chr10:18858609-18858894(-)$1	285	46	57	11.8181
AAAUGACCAAG	chr3:180665551-180665818(+)$1	267	115	126	14.5454
UACUGAACAAG	chr3:37368338-37368589(+)$1	251	192	203	11.5454
CAAAGAAGAAG	chr12:6690356-6690607(-)$1	251	84	95	12.7272
CAAUGAACAGA	chr20:32681408-32681637(-)$1	229	24	35	13.8181
gaaugaaaaaa	chr6:147618935-147619258(+)$1	323	266	277	18.0909
aaaagaaaaaa	chr7:27832583-27832810(+)$1	227	7	18	16.6363
aaaagaaaaac	chr20:33618554-33618891(-)$1	337	76	87	15.5454
AAAUGCAUAAA	chr17:65900716-65900974(+)$1	258	25	36	14.2727
gaauggacaau	chr10:18854605-18854859(-)$1	254	84	95	12.4545
AGAUGAACAUC	chr11:62288506-62288797(-)$1	291	38	49	10.5454
AAAUGAAAAAA	chr1:220195597-220195855(-)$1	258	25	36	19.8181
GAAUGAAGACA	chr5:10264737-10265057(+)$1	320	152	163	13.2727

#otherMatches

#Struct PSSM
ffffff[aooo	chr14:61278600-61278930(+)$1	330	154	165	19.7272
:::::::::::	chrM:13266-13496(+)$1	230	123	134	16.5454
[dddd####cc	chr2:55771958-55772236(+)$1	278	161	172	12.7272
::::::::::B	chr7:158485905-158486185(-)$1	280	22	33	12.8181
:::::::::::	chr4:770808-771123(-)$1	315	239	250	17.0000
d::::::::::	chr11:65267373-65267586(+)$1	213	77	88	13.3636
EEEEYYA}III	chr16:8997030-8997358(-)$1	328	146	157	12.7272
:::::::::::	chr17:56080818-56081051(-)$1	233	174	185	10.4545
ffffff::::c	chr6:35837484-35837745(-)$1	261	185	196	11.2727
dd:::::::::	chr10:18856331-18856616(-)$1	285	25	36	11.7272
rhhhhhhhhhh	chr8:101725257-101725496(-)$1	239	28	39	13.0000
fff[ffffff[	chr4:68383826-68384144(-)$1	318	251	262	14.8181
ffccc!!a[bb	chr12:6687155-6687403(-)$1	248	119	130	12.3636
sssseeeee33	chr15:20625771-20626062(-)$1	291	167	178	12.6363
EEEE:::::::	chr7:119433270-119433519(-)$1	249	5	16	18.0909
B}CCCIIIIII	chr8:91283668-91283972(+)$1	304	135	146	11.3636
:::cccppppp	chr12:6692404-6692644(-)$1	240	223	234	15.0000
:::::::::::	chr8:91384981-91385265(+)$1	284	131	142	12.0000
333dddd]ccc	chr8:91269600-91269874(+)$1	274	159	170	12.0909
FFFFFF::::d	chr7:77378758-77379101(+)$1	343	64	75	17.0000
!!ddddllldd	chr5:171368129-171368428(-)$1	299	155	166	13.5454
333hhhhhhhh	chr1:22033182-22033428(-)$1	246	86	97	15.2727
:::cccmmmmc	chr18:9254585-9254877(+)$1	292	103	114	13.8181
ppppbb:::::	chr21:34921813-34922083(+)$1	270	58	69	12.4545
ffff%%%%%%c	chr1:171526286-171526511(+)$1	225	112	123	18.6363
sssssssssee	chr11:62298842-62299120(-)$1	278	236	247	11.6363
mmmmccc5555	chr2:190339931-190340257(+)$1	326	64	75	14.7272
999999fffff	chr11:62284793-62285044(-)$1	251	134	145	14.2727
999999fffff	chr11:62284844-62285115(-)$1	271	205	216	14.2727
::::DDDDMMM	chr6:10940969-10941272(+)$1	303	90	101	11.3636
ddddxxxxxxx	chr3:6618194-6618466(+)$1	272	177	188	14.3636
!eeeee$$$$$	chr8:53569110-53569406(-)$1	296	63	74	13.9090
333dddd7777	chr11:11964381-11964703(+)$1	322	289	300	15.5454
ffff[bb((((	chr8:91386277-91386581(+)$1	304	41	52	11.5454
###bbtttttt	chr1:214816305-214816544(+)$1	239	190	201	14.3636
yyyyyyyyycc	chr8:91383047-91383334(+)$1	287	39	50	12.9999
WWWWWWWWWWD	chr16:47328272-47328575(-)$1	303	16	27	13.7272
fooooooffff	chr5:33467644-33467905(+)$1	261	166	177	17.2727
999999fffff	chr5:72286241-72286543(+)$1	302	106	117	11.6363
####ccc$$$$	chr21:38528976-38529280(+)$1	304	62	73	12.7272
f[bb+++++++	chr3:37366942-37367158(+)$1	216	7	18	15.2727
wwdddd:::::	chrM:13255-13466(+)$1	211	134	145	16.5454
:::::::::::	chr10:18858609-18858894(-)$1	285	46	57	11.8181
gggggggccc!	chr3:180665551-180665818(+)$1	267	115	126	14.5454
ggbb%%%%%%c	chr3:37368338-37368589(+)$1	251	192	203	11.5454
d:::GGGGGGG	chr12:6690356-6690607(-)$1	251	84	95	12.7272
!!ffffff!!h	chr20:32681408-32681637(-)$1	229	24	35	13.8181
iiixxxxxxxx	chr6:147618935-147619258(+)$1	323	266	277	18.0909
:::::::::::	chr7:27832583-27832810(+)$1	227	7	18	16.6363
mmeeeee:GGG	chr20:33618554-33618891(-)$1	337	76	87	15.5454
:eeeee[bbff	chr17:65900716-65900974(+)$1	258	25	36	14.2727
$$$$$ffffff	chr10:18854605-18854859(-)$1	254	84	95	12.4545
mmmbb22dddd	chr11:62288506-62288797(-)$1	291	38	49	10.5454
FFBB{DDDDKK	chr1:220195597-220195855(-)$1	258	25	36	19.8181
JJJJJYYHHHH	chr5:10264737-10265057(+)$1	320	152	163	13.2727

#DB
((((((.(...	chr14:61278600-61278930(+)$1	1	154	165	19.7272
...........	chrM:13266-13496(+)$1	1	123	134	16.5454
.((((....((	chr2:55771958-55772236(+)$1	1	161	172	12.7272
..........(	chr7:158485905-158486185(-)$1	1	22	33	12.8181
...........	chr4:770808-771123(-)$1	1	239	250	17.0000
)..........	chr11:65267373-65267586(+)$1	1	77	88	13.3636
))))..).)))	chr16:8997030-8997358(-)$1	1	146	157	12.7272
...........	chr17:56080818-56081051(-)$1	1	174	185	10.4545
))))))....(	chr6:35837484-35837745(-)$1	1	185	196	11.2727
)).........	chr10:18856331-18856616(-)$1	1	25	36	11.7272
.))))))))((	chr8:101725257-101725496(-)$1	1	28	39	13.0000
(((.((((((.	chr4:68383826-68384144(-)$1	1	251	262	14.8181
(((((..(.((	chr12:6687155-6687403(-)$1	1	119	130	12.3636
....)))))..	chr15:20625771-20626062(-)$1	1	167	178	12.6363
((((.......	chr7:119433270-119433519(-)$1	1	5	16	18.0909
).)))))))))	chr8:91283668-91283972(+)$1	1	135	146	11.3636
...(((.....	chr12:6692404-6692644(-)$1	1	223	234	15.0000
...........	chr8:91384981-91385265(+)$1	1	131	142	12.0000
...)))).)))	chr8:91269600-91269874(+)$1	1	159	170	12.0909
((((((....(	chr7:77378758-77379101(+)$1	1	64	75	17.0000
..((((...))	chr5:171368129-171368428(-)$1	1	155	166	13.5454
...))))))))	chr1:22033182-22033428(-)$1	1	86	97	15.2727
...(((....)	chr18:9254585-9254877(+)$1	1	103	114	13.8181
....)).....	chr21:34921813-34922083(+)$1	1	58	69	12.4545
((((......(	chr1:171526286-171526511(+)$1	1	112	123	18.6363
.........))	chr11:62298842-62299120(-)$1	1	236	247	11.6363
....)))....	chr2:190339931-190340257(+)$1	1	64	75	14.7272
......)))))	chr11:62284793-62285044(-)$1	1	134	145	14.2727
......)))))	chr11:62284844-62285115(-)$1	1	205	216	14.2727
....((((...	chr6:10940969-10941272(+)$1	1	90	101	11.3636
((((.......	chr3:6618194-6618466(+)$1	1	177	188	14.3636
.(((((.....	chr8:53569110-53569406(-)$1	1	63	74	13.9090
...))))....	chr11:11964381-11964703(+)$1	1	289	300	15.5454
((((.((....	chr8:91386277-91386581(+)$1	1	41	52	11.5454
...((......	chr1:214816305-214816544(+)$1	1	190	201	14.3636
.........))	chr8:91383047-91383334(+)$1	1	39	50	12.9999
..........(	chr16:47328272-47328575(-)$1	1	16	27	13.7272
(......))))	chr5:33467644-33467905(+)$1	1	166	177	17.2727
......)))))	chr5:72286241-72286543(+)$1	1	106	117	11.6363
....(((....	chr21:38528976-38529280(+)$1	1	62	73	12.7272
(.((.......	chr3:37366942-37367158(+)$1	1	7	18	15.2727
..)))).....	chrM:13255-13466(+)$1	1	134	145	16.5454
...........	chr10:18858609-18858894(-)$1	1	46	57	11.8181
)))))))(((.	chr3:180665551-180665818(+)$1	1	115	126	14.5454
((((......(	chr3:37368338-37368589(+)$1	1	192	203	11.5454
)...)))))))	chr12:6690356-6690607(-)$1	1	84	95	12.7272
..((((((..(	chr20:32681408-32681637(-)$1	1	24	35	13.8181
(((........	chr6:147618935-147619258(+)$1	1	266	277	18.0909
...........	chr7:27832583-27832810(+)$1	1	7	18	16.6363
..))))).(((	chr20:33618554-33618891(-)$1	1	76	87	15.5454
.(((((.((((	chr17:65900716-65900974(+)$1	1	25	36	14.2727
.....((((((	chr10:18854605-18854859(-)$1	1	84	95	12.4545
...))..))))	chr11:62288506-62288797(-)$1	1	38	49	10.5454
((((.((((..	chr1:220195597-220195855(-)$1	1	25	36	19.8181
)))))..))))	chr5:10264737-10265057(+)$1	1	152	163	13.2727

#PSSM
A : 0.40	a : 0.16	C : 0.12	g : 0.12	G : 0.09	U : 0.05	c : 0.03	
A : 0.60	a : 0.32	G : 0.05	C : 0.01	
A : 0.63	a : 0.29	c : 0.01	G : 0.01	u : 0.01	C : 0.01	
U : 0.54	u : 0.23	A : 0.09	a : 0.05	g : 0.03	C : 0.01	G : 0.01	
G : 0.61	g : 0.25	a : 0.03	c : 0.03	U : 0.03	A : 0.01	
A : 0.60	a : 0.27	C : 0.05	g : 0.05	U : 0.01	
A : 0.58	a : 0.27	G : 0.05	C : 0.03	g : 0.01	u : 0.01	c : 0.01	
C : 0.23	A : 0.21	G : 0.16	a : 0.14	c : 0.10	U : 0.05	g : 0.05	u : 0.01	
A : 0.60	a : 0.32	U : 0.01	C : 0.01	u : 0.01	G : 0.01	
A : 0.52	a : 0.30	U : 0.07	G : 0.05	u : 0.01	C : 0.01	
A : 0.27	G : 0.18	a : 0.16	C : 0.14	c : 0.07	U : 0.07	u : 0.07	g : 0.01	

#score	771.7272727272727
#seq	55
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_CDS_m2_run1.nuc.txt

#NT
UGGGCAUUUGGGAGCUGAAAGCAUCUUCAUUUUCUUUCAGAGGUACAGACAAAGAAAGUUCGAAAAGUUCCUCCAGGUUUGCCAUCUUCAGUAAGUACUGCUUGUUUCUGCUUUGUAUAUUGCUUAUUUUGUUCUGUUUUGUAUUGAUGGGAAGGAGAUAGAAGUAAAUGAGUUUCCAUGCGCCCAGAGCAGCACGUUUAUCUAGAAGGUGGAUGAGGUAGAAAUGACCUGCACAUCCAGCCACCUGACCCACAUUGGAGUGAUUAAUUGCACAUCCUGGAAGACUGGGUGGUUAUGUUGAUAUUCAGCAGGUUAAGCUCUAAAGAGAGCCUUGAAAA	chr18:53017335-53017696(-)$1	361	17	355	451.5000

#otherMatches

#Struct PSSM
hhhh[a[bb[aqqqqqqqqa]bb]a]hhhhhhhh]eeeee:::::hhhhhhhh[bb[bb[ffffffrrrrrrrrrffffff333bb]bb333hhhhhhhhHHHHHHHH{EEEEELLLHHHHHHHH{CCC::gggggggnnnnnggggggg::::::eeeee!!eeeee[ccc[hhhhhhhh####eeeee(((((((((ffffff!!bbrrrrrrrrrbb22ffffff999999999eeeee333hhhhhhhh]ccc]eeeee333eeeee:::CCCHHHHHHHH?????EEEEE?????HHHHHHHHBB}EEEEEYYCCC}CCC:::::::::::::	chr9:36399854-36400228(-)$1	374	31	369	451.5000
eeeee[a[hhhhhhhh[a%%%%%%dddd=========="""ffffffggggggg[dddd####eeeee$$$$$eeeeeddddqqqqqqqqdddd55555eeeee55555eeeee7777777dddd]ggggggg666666ffffff4444==========]dddd4444a]hhhhhhhh]a]eeeee:::::DDDD{CCC{BB{BB::::ffffff!!ddddpppppppdddd]ffffffhhhhhhhh!!ccc####ccccccqqqqqqqqccc]cccccc55555hhhhhhhh::fffffflllffffff::::::eeeeemmmmeeeeeBB}BBCCC	chr18:53017335-53017696(-)$1	361	17	355	451.5000

#DB
((((.(.((.(........).)).).)))))))).))))).....((((((((.((.((.((((((.........))))))...)).))...))))))))((((((((.(((((...((((((((.(((..(((((((.....)))))))......(((((..(((((.(((.((((((((....(((((.........((((((..((.........))..)))))).........)))))...)))))))).))).)))))...)))))...))))))))))).....))))).....)))))))))).)))))..))).))).............	chr9:36399854-36400228(-)$1	1	31	369	451.5000
(((((.(.((((((((.(......((((((((((((((...(((((((((((((.((((....(((((.....(((((((((........)))).....))))).....))))).......)))).)))))))......))))))....)))))))))).))))....).)))))))).).))))).....((((.(((.((.((....((((((..((((.......)))).))))))((((((((..(((....((((((........))).)))))).....))))))))..((((((...))))))......(((((....))))))).)))))	chr18:53017335-53017696(-)$1	1	17	355	451.5000

#PSSM
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
A : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	

#score	903.0
#seq	2
#width	338
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_transcript_m1_run1.nuc.txt

#NT
CUC	chr16:14970427-14970722(+)$1	295	78	81	9.0000
CUC	chr11:71155012-71155348(-)$1	336	5	8	9.0000
CUC	chrX:51639705-51640038(+)$1	333	13	16	9.0000
CUC	chr5:177019549-177019775(+)$1	226	6	9	9.0000
CUC	chr2:216300278-216300483(-)$1	205	23	26	9.0000
CUC	chr1:33502234-33502499(-)$1	265	74	77	9.0000
CUC	chr6:31609952-31610202(-)$1	250	38	41	9.0000
CUC	chr7:73245552-73245800(+)$1	248	104	107	9.0000
CUC	chr1:1372652-1372900(+)$1	248	18	21	9.0000
CUC	chr2:219293966-219294274(+)$1	308	9	12	9.0000
CUC	chr20:30193487-30193715(+)$1	228	32	35	9.0000
CUC	chr2:176042996-176043231(-)$1	235	92	95	9.0000
CUC	chr6:31237703-31237925(-)$1	222	40	43	9.0000
cuc	chr2:47596556-47596820(+)$1	264	6	9	9.0000
CUC	chr7:5567273-5567526(-)$1	253	11	14	9.0000
CUC	chr16:18812653-18812885(-)$1	232	11	14	9.0000
CUC	chr6:31624171-31624411(+)$1	240	48	51	9.0000
CUC	chr19:45312279-45312561(+)$1	282	36	39	9.0000
CUC	chr12:27167037-27167296(-)$1	259	0	3	9.0000
CUC	chr12:56708817-56709094(-)$1	277	31	34	9.0000
CUC	chr19:39923817-39924061(-)$1	244	41	44	9.0000
CUC	chr8:11705100-11705375(-)$1	275	18	21	9.0000
CUC	chr8:62627000-62627240(-)$1	240	8	11	9.0000
CUC	chr17:76967518-76967772(-)$1	254	12	15	9.0000
CUC	chr2:20202870-20203141(-)$1	271	85	88	9.0000
CUC	chr9:113013559-113013830(-)$1	271	144	147	9.0000
CUC	chr4:129208527-129208818(-)$1	291	57	60	9.0000
CUC	chr17:79818206-79818471(-)$1	265	61	64	9.0000
CUC	chr19:59060254-59060473(+)$1	219	36	39	9.0000
CUC	chr14:94847230-94847467(-)$1	237	213	216	9.0000
CUC	chr19:58904284-58904595(+)$1	311	14	17	9.0000
CUC	chr1:32800429-32800702(-)$1	273	192	195	9.0000
CUC	chr5:52776354-52776635(+)$1	281	1	4	9.0000
CUC	chr12:50149412-50149638(+)$1	226	28	31	9.0000
CUC	chr17:70117318-70117586(+)$1	268	4	7	9.0000
CUC	chr3:23960755-23961018(+)$1	263	21	24	9.0000
CUC	chr5:132202581-132202830(+)$1	249	209	212	9.0000
CUC	chr12:51319128-51319371(+)$1	243	100	103	9.0000
CUC	chr3:124605760-124606062(-)$1	302	23	26	9.0000
CUC	chrX:77380294-77380550(+)$1	256	46	49	9.0000
CUC	chr17:1673067-1673292(+)$1	225	30	33	9.0000
CUC	chr3:58148812-58149030(+)$1	218	5	8	9.0000
CUC	chr20:30102390-30102636(+)$1	246	78	81	9.0000
CUC	chr19:48894518-48894805(-)$1	287	5	8	9.0000
CUC	chr2:216252906-216253124(-)$1	218	51	54	9.0000
CUC	chr7:45928257-45928469(+)$1	212	13	16	9.0000
CUC	chr5:114961531-114961797(-)$1	266	31	34	9.0000
CUC	chr11:43702357-43702595(+)$1	238	30	33	9.0000
CUC	chr7:75693588-75693829(+)$1	241	40	43	9.0000
CUC	chr10:7759572-7759811(+)$1	239	24	27	9.0000
CUC	chr12:56530929-56531178(+)$1	249	184	187	9.0000
CUC	chr19:39196653-39196871(+)$1	218	5	8	9.0000
CUC	chr7:103236903-103237144(-)$1	241	162	165	9.0000
CUC	chr12:8083871-8084174(-)$1	303	49	52	9.0000
CUC	chr8:17726082-17726329(-)$1	247	51	54	9.0000
CUC	chr7:143573413-143573780(-)$1	367	2	5	9.0000
CUC	chr19:13051042-13051311(+)$1	269	103	106	9.0000
CUC	chr12:110778360-110778667(+)$1	307	18	21	9.0000
CUC	chr9:140136295-140136563(+)$1	268	15	18	9.0000
CUC	chr5:10391633-10391939(+)$1	306	21	24	9.0000
CUC	chr10:103577696-103578029(-)$1	333	51	54	9.0000
CUC	chr1:1163839-1164082(-)$1	243	31	34	9.0000
CUC	chr14:94847201-94847430(-)$1	229	176	179	9.0000
CUC	chr14:90863308-90863561(+)$1	253	1	4	9.0000
CUC	chr1:153640831-153641083(-)$1	252	135	138	9.0000
CUC	chr17:80044205-80044416(-)$1	211	73	76	9.0000
CUC	chr12:9220678-9220915(-)$1	237	4	7	9.0000
CUC	chr17:40042364-40042581(-)$1	217	88	91	9.0000
CUC	chr11:61110765-61111024(+)$1	259	34	37	9.0000
CUC	chr5:118835037-118835296(+)$1	259	114	117	9.0000
CUC	chr8:145550235-145550504(-)$1	269	145	148	9.0000
CUC	chr7:148716037-148716312(-)$1	275	46	49	9.0000
CUC	chr19:11547124-11547376(+)$1	252	188	191	9.0000
CUC	chr1:27239965-27240250(-)$1	285	26	29	9.0000
CUC	chr22:45937933-45938197(+)$1	264	89	92	9.0000
CUC	chr7:148701146-148701380(-)$1	234	55	58	9.0000
CUC	chr7:107592400-107592656(-)$1	256	34	37	9.0000
CUC	chr19:6686692-6686920(-)$1	228	0	3	9.0000
CUC	chr19:6710563-6710828(-)$1	265	139	142	9.0000
CUC	chr3:186760862-186761157(+)$1	295	58	61	9.0000
CUC	chr1:43408834-43409090(-)$1	256	56	59	9.0000
CUC	chr3:79068182-79068501(-)$1	319	0	3	9.0000
CUC	chr1:228284967-228285253(+)$1	286	52	55	9.0000
CUC	chr4:120221398-120221681(-)$1	283	30	33	9.0000
CUC	chrX:48318934-48319140(-)$1	206	37	40	9.0000
CUC	chr2:65357052-65357331(-)$1	279	29	32	9.0000
CUC	chrX:77373512-77373768(+)$1	256	35	38	9.0000
CUC	chr11:130011837-130012066(+)$1	229	22	25	9.0000
CUC	chr19:45412481-45412694(+)$1	213	68	71	9.0000
CUC	chr11:116707977-116708188(-)$1	211	38	41	9.0000
CUC	chr19:18499030-18499280(+)$1	250	5	8	9.0000
CUC	chr6:75953331-75953591(-)$1	260	12	15	9.0000
CUC	chr12:125271851-125272060(-)$1	209	94	97	9.0000
CUC	chr9:5823851-5824103(-)$1	252	9	12	9.0000
CUC	chr16:3721624-3721882(-)$1	258	83	86	9.0000
CUC	chr17:79817050-79817307(-)$1	257	27	30	9.0000
CUC	chr2:216259201-216259448(-)$1	247	0	3	9.0000
CUC	chr11:116707770-116707973(-)$1	203	4	7	9.0000
CUC	chr4:155533642-155533887(-)$1	245	12	15	9.0000

#otherMatches

#Struct PSSM
:::	chr2:219677200-219677433(+)$1	233	2	5	9.0000
i55	chr16:14970427-14970722(+)$1	295	78	81	9.0000
:ff	chr11:71155012-71155348(-)$1	336	5	8	9.0000
:EE	chrX:51639705-51640038(+)$1	333	13	16	9.0000
GGG	chr5:177019549-177019775(+)$1	226	6	9	9.0000
ccc	chr2:216300278-216300483(-)$1	205	23	26	9.0000
cc]	chr1:33502234-33502499(-)$1	265	74	77	9.0000
F::	chr6:31609952-31610202(-)$1	250	38	41	9.0000
ddd	chr7:73245552-73245800(+)$1	248	104	107	9.0000
JJJ	chr1:1372652-1372900(+)$1	248	18	21	9.0000
qqq	chr2:219293966-219294274(+)$1	308	9	12	9.0000
FFF	chr20:30193487-30193715(+)$1	228	32	35	9.0000
[cc	chr2:176042996-176043231(-)$1	235	92	95	9.0000
ppp	chr6:31237703-31237925(-)$1	222	40	43	9.0000
ooo	chr2:47596556-47596820(+)$1	264	6	9	9.0000
vvv	chr7:5567273-5567526(-)$1	253	11	14	9.0000
c::	chr16:18812653-18812885(-)$1	232	11	14	9.0000
^^^	chr6:31624171-31624411(+)$1	240	48	51	9.0000
iii	chr19:45312279-45312561(+)$1	282	36	39	9.0000
A{J	chr12:27167037-27167296(-)$1	259	0	3	9.0000
CCD	chr12:56708817-56709094(-)$1	277	31	34	9.0000
iii	chr19:39923817-39924061(-)$1	244	41	44	9.0000
oob	chr8:11705100-11705375(-)$1	275	18	21	9.0000
DDD	chr8:62627000-62627240(-)$1	240	8	11	9.0000
DDD	chr17:76967518-76967772(-)$1	254	12	15	9.0000
GGG	chr2:20202870-20203141(-)$1	271	85	88	9.0000
mee	chr9:113013559-113013830(-)$1	271	144	147	9.0000
EEE	chr4:129208527-129208818(-)$1	291	57	60	9.0000
amm	chr17:79818206-79818471(-)$1	265	61	64	9.0000
ff2	chr19:59060254-59060473(+)$1	219	36	39	9.0000
!bb	chr14:94847230-94847467(-)$1	237	213	216	9.0000
D{C	chr19:58904284-58904595(+)$1	311	14	17	9.0000
dd]	chr1:32800429-32800702(-)$1	273	192	195	9.0000
CCI	chr5:52776354-52776635(+)$1	281	1	4	9.0000
ee]	chr12:50149412-50149638(+)$1	226	28	31	9.0000
[cc	chr17:70117318-70117586(+)$1	268	4	7	9.0000
eee	chr3:23960755-23961018(+)$1	263	21	24	9.0000
EEE	chr5:132202581-132202830(+)$1	249	209	212	9.0000
cca	chr12:51319128-51319371(+)$1	243	100	103	9.0000
eee	chr3:124605760-124606062(-)$1	302	23	26	9.0000
dd3	chrX:77380294-77380550(+)$1	256	46	49	9.0000
bdd	chr17:1673067-1673292(+)$1	225	30	33	9.0000
FFF	chr3:58148812-58149030(+)$1	218	5	8	9.0000
!!b	chr20:30102390-30102636(+)$1	246	78	81	9.0000
E::	chr19:48894518-48894805(-)$1	287	5	8	9.0000
ccc	chr2:216252906-216253124(-)$1	218	51	54	9.0000
F{D	chr7:45928257-45928469(+)$1	212	13	16	9.0000
KDD	chr5:114961531-114961797(-)$1	266	31	34	9.0000
ppp	chr11:43702357-43702595(+)$1	238	30	33	9.0000
ddd	chr7:75693588-75693829(+)$1	241	40	43	9.0000
ggg	chr10:7759572-7759811(+)$1	239	24	27	9.0000
GGG	chr12:56530929-56531178(+)$1	249	184	187	9.0000
EEE	chr19:39196653-39196871(+)$1	218	5	8	9.0000
ggg	chr7:103236903-103237144(-)$1	241	162	165	9.0000
rrr	chr12:8083871-8084174(-)$1	303	49	52	9.0000
ccc	chr8:17726082-17726329(-)$1	247	51	54	9.0000
hhh	chr7:143573413-143573780(-)$1	367	2	5	9.0000
dd:	chr19:13051042-13051311(+)$1	269	103	106	9.0000
GG:	chr12:110778360-110778667(+)$1	307	18	21	9.0000
rrr	chr9:140136295-140136563(+)$1	268	15	18	9.0000
d]b	chr5:10391633-10391939(+)$1	306	21	24	9.0000
c]c	chr10:103577696-103578029(-)$1	333	51	54	9.0000
GGG	chr1:1163839-1164082(-)$1	243	31	34	9.0000
@@@	chr14:94847201-94847430(-)$1	229	176	179	9.0000
fff	chr14:90863308-90863561(+)$1	253	1	4	9.0000
ff:	chr1:153640831-153641083(-)$1	252	135	138	9.0000
dbb	chr17:80044205-80044416(-)$1	211	73	76	9.0000
:::	chr12:9220678-9220915(-)$1	237	4	7	9.0000
GGG	chr17:40042364-40042581(-)$1	217	88	91	9.0000
ooo	chr11:61110765-61111024(+)$1	259	34	37	9.0000
gg[	chr5:118835037-118835296(+)$1	259	114	117	9.0000
eee	chr8:145550235-145550504(-)$1	269	145	148	9.0000
JJJ	chr7:148716037-148716312(-)$1	275	46	49	9.0000
fff	chr19:11547124-11547376(+)$1	252	188	191	9.0000
:::	chr1:27239965-27240250(-)$1	285	26	29	9.0000
hhh	chr22:45937933-45938197(+)$1	264	89	92	9.0000
:GG	chr7:148701146-148701380(-)$1	234	55	58	9.0000
CBB	chr7:107592400-107592656(-)$1	256	34	37	9.0000
:CC	chr19:6686692-6686920(-)$1	228	0	3	9.0000
[==	chr19:6710563-6710828(-)$1	265	139	142	9.0000
ddd	chr3:186760862-186761157(+)$1	295	58	61	9.0000
d##	chr1:43408834-43409090(-)$1	256	56	59	9.0000
:::	chr3:79068182-79068501(-)$1	319	0	3	9.0000
ddE	chr1:228284967-228285253(+)$1	286	52	55	9.0000
B{B	chr4:120221398-120221681(-)$1	283	30	33	9.0000
G{E	chrX:48318934-48319140(-)$1	206	37	40	9.0000
DDD	chr2:65357052-65357331(-)$1	279	29	32	9.0000
eee	chrX:77373512-77373768(+)$1	256	35	38	9.0000
cco	chr11:130011837-130012066(+)$1	229	22	25	9.0000
"""	chr19:45412481-45412694(+)$1	213	68	71	9.0000
2ee	chr11:116707977-116708188(-)$1	211	38	41	9.0000
:::	chr19:18499030-18499280(+)$1	250	5	8	9.0000
GGG	chr6:75953331-75953591(-)$1	260	12	15	9.0000
eee	chr12:125271851-125272060(-)$1	209	94	97	9.0000
EEE	chr9:5823851-5824103(-)$1	252	9	12	9.0000
fff	chr16:3721624-3721882(-)$1	258	83	86	9.0000
ffv	chr17:79817050-79817307(-)$1	257	27	30	9.0000
:::	chr2:216259201-216259448(-)$1	247	0	3	9.0000
:::	chr11:116707770-116707973(-)$1	203	4	7	9.0000
MMM	chr4:155533642-155533887(-)$1	245	12	15	9.0000

#DB
...	chr2:219677200-219677433(+)$1	1	2	5	9.0000
)..	chr16:14970427-14970722(+)$1	1	78	81	9.0000
.((	chr11:71155012-71155348(-)$1	1	5	8	9.0000
.((	chrX:51639705-51640038(+)$1	1	13	16	9.0000
(((	chr5:177019549-177019775(+)$1	1	6	9	9.0000
)((	chr2:216300278-216300483(-)$1	1	23	26	9.0000
)).	chr1:33502234-33502499(-)$1	1	74	77	9.0000
(..	chr6:31609952-31610202(-)$1	1	38	41	9.0000
(((	chr7:73245552-73245800(+)$1	1	104	107	9.0000
(((	chr1:1372652-1372900(+)$1	1	18	21	9.0000
...	chr2:219293966-219294274(+)$1	1	9	12	9.0000
(((	chr20:30193487-30193715(+)$1	1	32	35	9.0000
.((	chr2:176042996-176043231(-)$1	1	92	95	9.0000
...	chr6:31237703-31237925(-)$1	1	40	43	9.0000
...	chr2:47596556-47596820(+)$1	1	6	9	9.0000
...	chr7:5567273-5567526(-)$1	1	11	14	9.0000
)..	chr16:18812653-18812885(-)$1	1	11	14	9.0000
...	chr6:31624171-31624411(+)$1	1	48	51	9.0000
)))	chr19:45312279-45312561(+)$1	1	36	39	9.0000
(.(	chr12:27167037-27167296(-)$1	1	0	3	9.0000
(((	chr12:56708817-56709094(-)$1	1	31	34	9.0000
)))	chr19:39923817-39924061(-)$1	1	41	44	9.0000
..)	chr8:11705100-11705375(-)$1	1	18	21	9.0000
(((	chr8:62627000-62627240(-)$1	1	8	11	9.0000
(((	chr17:76967518-76967772(-)$1	1	12	15	9.0000
(((	chr2:20202870-20203141(-)$1	1	85	88	9.0000
.))	chr9:113013559-113013830(-)$1	1	144	147	9.0000
(((	chr4:129208527-129208818(-)$1	1	57	60	9.0000
(..	chr17:79818206-79818471(-)$1	1	61	64	9.0000
)).	chr19:59060254-59060473(+)$1	1	36	39	9.0000
.((	chr14:94847230-94847467(-)$1	1	213	216	9.0000
(.(	chr19:58904284-58904595(+)$1	1	14	17	9.0000
)).	chr1:32800429-32800702(-)$1	1	192	195	9.0000
(((	chr5:52776354-52776635(+)$1	1	1	4	9.0000
)).	chr12:50149412-50149638(+)$1	1	28	31	9.0000
.((	chr17:70117318-70117586(+)$1	1	4	7	9.0000
)))	chr3:23960755-23961018(+)$1	1	21	24	9.0000
)))	chr5:132202581-132202830(+)$1	1	209	212	9.0000
(((	chr12:51319128-51319371(+)$1	1	100	103	9.0000
(((	chr3:124605760-124606062(-)$1	1	23	26	9.0000
)).	chrX:77380294-77380550(+)$1	1	46	49	9.0000
(((	chr17:1673067-1673292(+)$1	1	30	33	9.0000
(((	chr3:58148812-58149030(+)$1	1	5	8	9.0000
..(	chr20:30102390-30102636(+)$1	1	78	81	9.0000
(..	chr19:48894518-48894805(-)$1	1	5	8	9.0000
(((	chr2:216252906-216253124(-)$1	1	51	54	9.0000
(.(	chr7:45928257-45928469(+)$1	1	13	16	9.0000
.((	chr5:114961531-114961797(-)$1	1	31	34	9.0000
...	chr11:43702357-43702595(+)$1	1	30	33	9.0000
)))	chr7:75693588-75693829(+)$1	1	40	43	9.0000
(((	chr10:7759572-7759811(+)$1	1	24	27	9.0000
(((	chr12:56530929-56531178(+)$1	1	184	187	9.0000
(((	chr19:39196653-39196871(+)$1	1	5	8	9.0000
)))	chr7:103236903-103237144(-)$1	1	162	165	9.0000
...	chr12:8083871-8084174(-)$1	1	49	52	9.0000
)))	chr8:17726082-17726329(-)$1	1	51	54	9.0000
(((	chr7:143573413-143573780(-)$1	1	2	5	9.0000
)).	chr19:13051042-13051311(+)$1	1	103	106	9.0000
((.	chr12:110778360-110778667(+)$1	1	18	21	9.0000
...	chr9:140136295-140136563(+)$1	1	15	18	9.0000
).)	chr5:10391633-10391939(+)$1	1	21	24	9.0000
).)	chr10:103577696-103578029(-)$1	1	51	54	9.0000
(((	chr1:1163839-1164082(-)$1	1	31	34	9.0000
...	chr14:94847201-94847430(-)$1	1	176	179	9.0000
(((	chr14:90863308-90863561(+)$1	1	1	4	9.0000
)).	chr1:153640831-153641083(-)$1	1	135	138	9.0000
)))	chr17:80044205-80044416(-)$1	1	73	76	9.0000
...	chr12:9220678-9220915(-)$1	1	4	7	9.0000
)))	chr17:40042364-40042581(-)$1	1	88	91	9.0000
...	chr11:61110765-61111024(+)$1	1	34	37	9.0000
((.	chr5:118835037-118835296(+)$1	1	114	117	9.0000
)))	chr8:145550235-145550504(-)$1	1	145	148	9.0000
(((	chr7:148716037-148716312(-)$1	1	46	49	9.0000
(((	chr19:11547124-11547376(+)$1	1	188	191	9.0000
...	chr1:27239965-27240250(-)$1	1	26	29	9.0000
)))	chr22:45937933-45938197(+)$1	1	89	92	9.0000
.((	chr7:148701146-148701380(-)$1	1	55	58	9.0000
(((	chr7:107592400-107592656(-)$1	1	34	37	9.0000
.((	chr19:6686692-6686920(-)$1	1	0	3	9.0000
.((	chr19:6710563-6710828(-)$1	1	139	142	9.0000
(((	chr3:186760862-186761157(+)$1	1	58	61	9.0000
(..	chr1:43408834-43409090(-)$1	1	56	59	9.0000
...	chr3:79068182-79068501(-)$1	1	0	3	9.0000
))(	chr1:228284967-228285253(+)$1	1	52	55	9.0000
(.(	chr4:120221398-120221681(-)$1	1	30	33	9.0000
(.(	chrX:48318934-48319140(-)$1	1	37	40	9.0000
(((	chr2:65357052-65357331(-)$1	1	29	32	9.0000
(((	chrX:77373512-77373768(+)$1	1	35	38	9.0000
((.	chr11:130011837-130012066(+)$1	1	22	25	9.0000
...	chr19:45412481-45412694(+)$1	1	68	71	9.0000
.))	chr11:116707977-116708188(-)$1	1	38	41	9.0000
...	chr19:18499030-18499280(+)$1	1	5	8	9.0000
(((	chr6:75953331-75953591(-)$1	1	12	15	9.0000
(((	chr12:125271851-125272060(-)$1	1	94	97	9.0000
(((	chr9:5823851-5824103(-)$1	1	9	12	9.0000
)))	chr16:3721624-3721882(-)$1	1	83	86	9.0000
((.	chr17:79817050-79817307(-)$1	1	27	30	9.0000
...	chr2:216259201-216259448(-)$1	1	0	3	9.0000
...	chr11:116707770-116707973(-)$1	1	4	7	9.0000
...	chr4:155533642-155533887(-)$1	1	12	15	9.0000

#PSSM
C : 0.99	c : 0.01	
U : 0.99	u : 0.01	
C : 0.99	c : 0.01	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_CDS_m2_run2.nuc.txt

#NT
GAAGUAGAA	chr20:34319886-34320138(-)$1	252	197	206	18.9565
GAAGAAGAA	chr16:2808882-2809147(+)$1	265	151	160	23.4130
GAAGAGGAA	chr14:21820839-21821078(-)$1	239	156	165	19.7173
CAAGAAGAA	chr16:8904875-8905136(+)$1	261	124	133	19.4999
GAAGACGAA	chr10:101590393-101590687(+)$1	294	152	161	19.4999
gaaggagaa	chr11:58379037-58379315(+)$1	278	84	93	19.0652
GAAGAAGAU	chr10:70532708-70532957(+)$1	249	81	90	18.8478
GAAGAGGAA	chr7:106840509-106840840(+)$1	331	215	224	19.7173
GAUGAAGAA	chr3:142741234-142741597(+)$1	363	182	191	19.3913
CAAGAAGAA	chr20:52831813-52832080(+)$1	267	130	139	19.4999
GAGGAAGAA	chr11:65830793-65831103(+)$1	310	86	95	19.0652
GAAGAAGAA	chr2:136528040-136528318(+)$1	278	169	178	23.4130
GAAGAUGAA	chr6:136582294-136582597(-)$1	303	132	141	19.9347
gaagaggaa	chr5:140038565-140038830(+)$1	265	130	139	19.7173
GAAGAAGAA	chr11:118888571-118888810(-)$1	239	64	73	23.4130
GAUGAAGAA	chr10:1062947-1063225(+)$1	278	90	99	19.3913
CAAGAAGAA	chr20:17595975-17596195(-)$1	220	45	54	19.4999
GAAGAAGCA	chr9:19376390-19376611(-)$1	221	47	56	19.0652
GAAAAAGAA	chr6:144768246-144768492(+)$1	246	124	133	18.6304
GAAGCAGAA	chr6:7581042-7581294(+)$1	252	87	96	18.9565
gaagaagaa	chr14:102551125-102551383(-)$1	258	108	117	23.4130
GAAGAAGAG	chr2:172582023-172582307(+)$1	284	154	163	18.9565
gaagaagaa	chr12:72037795-72038138(-)$1	343	141	150	23.4130
gaagaugaa	chr1:150198932-150199228(-)$1	296	205	214	19.9347
GAAGAAGAA	chr2:232325316-232325572(-)$1	256	0	9	23.4130
GAUGAAGAA	chr15:69072646-69072911(-)$1	265	102	111	19.3913
GAAGAAGAA	chr12:6696448-6696681(-)$1	233	117	126	23.4130
gaagaugaa	chr8:124382085-124382366(-)$1	281	146	155	19.9347
CAAGAAGAA	chr22:38201842-38202124(+)$1	282	146	155	19.4999
GAAGAUGAA	chr2:232327812-232328018(-)$1	206	75	84	19.9347
GAAGAAGAA	chr1:27105560-27105826(+)$1	266	115	124	23.4130
GAAGAAGGA	chr1:93307234-93307447(+)$1	213	118	127	19.0652
GAAGAAGAA	chr2:99980136-99980428(+)$1	292	111	120	23.4130
GAAGAAGAA	chr14:31058538-31058802(+)$1	264	83	92	23.4130
GAAGAAGGA	chr14:31425244-31425533(-)$1	289	132	141	19.0652
GAAGAAGAA	chr12:76453484-76453738(-)$1	254	116	125	23.4130
AAAGAAGAA	chr20:17934538-17934761(-)$1	223	84	93	19.2826
GAAGAACAA	chr13:107196254-107196511(-)$1	257	27	36	18.6304
AAAGAAGAA	chr7:156956397-156956670(+)$1	273	143	152	19.2826
GAAGAUGAA	chr1:205689657-205689881(-)$1	224	108	117	19.9347
GAAGAAGAA	chr15:44063286-44063547(+)$1	261	99	108	23.4130
gaagaagaa	chr12:104332045-104332257(+)$1	212	99	108	23.4130
gaugaagaa	chr2:232325279-232325482(-)$1	203	0	9	19.3913
gaaggagaa	chr8:117862756-117863032(-)$1	276	133	142	19.0652
gaagaagag	chr14:23549748-23550006(-)$1	258	102	111	18.9565

#otherMatches

#Struct PSSM
d[ccc%%%%	chr18:55282772-55283064(-)$1	292	135	144	19.0652
rrrrrrrrr	chr20:34319886-34320138(-)$1	252	197	206	18.9565
=========	chr16:2808882-2809147(+)$1	265	151	160	23.4130
B}FFFFFFY	chr14:21820839-21821078(-)$1	239	156	165	19.7173
:dddd[a[b	chr16:8904875-8905136(+)$1	261	124	133	19.4999
333ccc22f	chr10:101590393-101590687(+)$1	294	152	161	19.4999
:::::::::	chr11:58379037-58379315(+)$1	278	84	93	19.0652
SSSSSBBKK	chr10:70532708-70532957(+)$1	249	81	90	18.8478
dd[dddd!!	chr7:106840509-106840840(+)$1	331	215	224	19.7173
GGGGGGGdd	chr3:142741234-142741597(+)$1	363	182	191	19.3913
cc9999999	chr20:52831813-52832080(+)$1	267	130	139	19.4999
qqbb22iii	chr11:65830793-65831103(+)$1	310	86	95	19.0652
:::::::::	chr2:136528040-136528318(+)$1	278	169	178	23.4130
FFFF}DDDD	chr6:136582294-136582597(-)$1	303	132	141	19.9347
:::::::::	chr5:140038565-140038830(+)$1	265	130	139	19.7173
+++++++++	chr11:118888571-118888810(-)$1	239	64	73	23.4130
:::::::::	chr10:1062947-1063225(+)$1	278	90	99	19.3913
cccoooooo	chr20:17595975-17596195(-)$1	220	45	54	19.4999
pppppdddd	chr9:19376390-19376611(-)$1	221	47	56	19.0652
dd::::::H	chr6:144768246-144768492(+)$1	246	124	133	18.6304
NNNNCCCKK	chr6:7581042-7581294(+)$1	252	87	96	18.9565
:::::::::	chr14:102551125-102551383(-)$1	258	108	117	23.4130
=========	chr2:172582023-172582307(+)$1	284	154	163	18.9565
ee:::::::	chr12:72037795-72038138(-)$1	343	141	150	23.4130
FYYDDDD\\	chr1:150198932-150199228(-)$1	296	205	214	19.9347
:::::::::	chr2:232325316-232325572(-)$1	256	0	9	23.4130
cccpppppp	chr15:69072646-69072911(-)$1	265	102	111	19.3913
hh'''''''	chr12:6696448-6696681(-)$1	233	117	126	23.4130
b22ccc]dd	chr8:124382085-124382366(-)$1	281	146	155	19.9347
d::::::::	chr22:38201842-38202124(+)$1	282	146	155	19.4999
KKDDDD:::	chr2:232327812-232328018(-)$1	206	75	84	19.9347
f::::::::	chr1:27105560-27105826(+)$1	266	115	124	23.4130
fffffdddd	chr1:93307234-93307447(+)$1	213	118	127	19.0652
c:::::DDD	chr2:99980136-99980428(+)$1	292	111	120	23.4130
BBEEEEEKK	chr14:31058538-31058802(+)$1	264	83	92	23.4130
nnnnnccc:	chr14:31425244-31425533(-)$1	289	132	141	19.0652
ggggggg22	chr12:76453484-76453738(-)$1	254	116	125	23.4130
qqccc4444	chr20:17934538-17934761(-)$1	223	84	93	19.2826
f++++++++	chr13:107196254-107196511(-)$1	257	27	36	18.6304
hhhh00000	chr7:156956397-156956670(+)$1	273	143	152	19.2826
ff333ccc4	chr1:205689657-205689881(-)$1	224	108	117	19.9347
^^^^^^^^^	chr15:44063286-44063547(+)$1	261	99	108	23.4130
arrrrrrrr	chr12:104332045-104332257(+)$1	212	99	108	23.4130
:::::::::	chr2:232325279-232325482(-)$1	203	0	9	19.3913
eeee:::::	chr8:117862756-117863032(-)$1	276	133	142	19.0652
bb:::::::	chr14:23549748-23550006(-)$1	258	102	111	18.9565

#DB
(.(((....	chr18:55282772-55283064(-)$1	1	135	144	19.0652
.........	chr20:34319886-34320138(-)$1	1	197	206	18.9565
(((((((((	chr16:2808882-2809147(+)$1	1	151	160	23.4130
).)))))).	chr14:21820839-21821078(-)$1	1	156	165	19.7173
.((((.(.(	chr16:8904875-8905136(+)$1	1	124	133	19.4999
...)))..)	chr10:101590393-101590687(+)$1	1	152	161	19.4999
.........	chr11:58379037-58379315(+)$1	1	84	93	19.0652
.....((..	chr10:70532708-70532957(+)$1	1	81	90	18.8478
((.((((..	chr7:106840509-106840840(+)$1	1	215	224	19.7173
)))))))((	chr3:142741234-142741597(+)$1	1	182	191	19.3913
)).......	chr20:52831813-52832080(+)$1	1	130	139	19.4999
..))..)))	chr11:65830793-65831103(+)$1	1	86	95	19.0652
.........	chr2:136528040-136528318(+)$1	1	169	178	23.4130
)))).))))	chr6:136582294-136582597(-)$1	1	132	141	19.9347
.........	chr5:140038565-140038830(+)$1	1	130	139	19.7173
.........	chr11:118888571-118888810(-)$1	1	64	73	23.4130
.........	chr10:1062947-1063225(+)$1	1	90	99	19.3913
(((......	chr20:17595975-17596195(-)$1	1	45	54	19.4999
.....))))	chr9:19376390-19376611(-)$1	1	47	56	19.0652
))......)	chr6:144768246-144768492(+)$1	1	124	133	18.6304
....(((..	chr6:7581042-7581294(+)$1	1	87	96	18.9565
.........	chr14:102551125-102551383(-)$1	1	108	117	23.4130
)))))))))	chr2:172582023-172582307(+)$1	1	154	163	18.9565
)).......	chr12:72037795-72038138(-)$1	1	141	150	23.4130
)..))))..	chr1:150198932-150199228(-)$1	1	205	214	19.9347
.........	chr2:232325316-232325572(-)$1	1	0	9	23.4130
(((......	chr15:69072646-69072911(-)$1	1	102	111	19.3913
((.......	chr12:6696448-6696681(-)$1	1	117	126	23.4130
)..))).))	chr8:124382085-124382366(-)$1	1	146	155	19.9347
)........	chr22:38201842-38202124(+)$1	1	146	155	19.4999
..((((...	chr2:232327812-232328018(-)$1	1	75	84	19.9347
)........	chr1:27105560-27105826(+)$1	1	115	124	23.4130
)))))))))	chr1:93307234-93307447(+)$1	1	118	127	19.0652
).....(((	chr2:99980136-99980428(+)$1	1	111	120	23.4130
(((((((..	chr14:31058538-31058802(+)$1	1	83	92	23.4130
.....))).	chr14:31425244-31425533(-)$1	1	132	141	19.0652
)))))))..	chr12:76453484-76453738(-)$1	1	116	125	23.4130
..)))....	chr20:17934538-17934761(-)$1	1	84	93	19.2826
(........	chr13:107196254-107196511(-)$1	1	27	36	18.6304
)))).....	chr7:156956397-156956670(+)$1	1	143	152	19.2826
))...))).	chr1:205689657-205689881(-)$1	1	108	117	19.9347
.........	chr15:44063286-44063547(+)$1	1	99	108	23.4130
(........	chr12:104332045-104332257(+)$1	1	99	108	23.4130
.........	chr2:232325279-232325482(-)$1	1	0	9	19.3913
)))).....	chr8:117862756-117863032(-)$1	1	133	142	19.0652
)).......	chr14:23549748-23550006(-)$1	1	102	111	18.9565

#PSSM
G : 0.65	g : 0.21	C : 0.08	A : 0.04	
A : 0.78	a : 0.21	
A : 0.69	a : 0.19	U : 0.06	G : 0.02	u : 0.02	
G : 0.76	g : 0.21	A : 0.02	
A : 0.73	a : 0.17	g : 0.04	U : 0.02	C : 0.02	
A : 0.65	a : 0.15	U : 0.06	G : 0.04	u : 0.04	C : 0.02	g : 0.02	
G : 0.76	g : 0.21	C : 0.02	
A : 0.69	a : 0.21	C : 0.04	G : 0.04	
A : 0.73	a : 0.19	U : 0.02	G : 0.02	g : 0.02	

#score	942.2173913043474
#seq	46
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_UTR_m2_run1.nuc.txt

#NT
GGGUGAGG	chr11:940587-940837(+)$1	250	233	241	16.0000
GGGUGUGG	chr2:131806219-131806446(-)$1	227	30	38	15.8888
GGGUGCGG	chr3:53878534-53878785(-)$1	251	167	175	15.7777
GGGUGGGG	chr1:20237075-20237337(+)$1	262	241	249	19.5555
GAGUGGGG	chr11:47545206-47545443(-)$1	237	169	177	15.8888
GGCUGGGG	chr17:80816333-80816607(+)$1	274	105	113	15.6666
GGGUGGUG	chr17:30678484-30678730(+)$1	246	107	115	15.4444
GGCUGGGG	chr21:30671740-30671987(+)$1	247	53	61	15.6666
GGGUUGGG	chr2:118675180-118675419(-)$1	239	1	9	15.1111
GGGUGAGG	chr11:940686-940966(+)$1	280	134	142	16.0000
GGGUAGGG	chr3:49130595-49130875(-)$1	280	205	213	15.1111
GGCUGGGG	chr17:79879026-79879313(-)$1	287	141	149	15.6666
AGGUGGGG	chr20:23357029-23357273(-)$1	244	228	236	15.7777
GGGUGGGG	chr2:85766812-85767140(+)$1	328	194	202	19.5555
GGGUGGGA	chr3:187454606-187454857(-)$1	251	188	196	15.0000
AGGUGGGG	chrX:17755979-17756226(+)$1	247	121	129	15.7777
GGGUGGGG	chr19:54970219-54970463(+)$1	244	53	61	19.5555
GGGUCGGG	chr11:111610074-111610317(-)$1	243	70	78	15.2222
AGGUGGGG	chr7:157130188-157130472(+)$1	284	132	140	15.7777
GAGUGGGG	chr16:1726605-1726925(+)$1	320	261	269	15.8888
GGGUGGGA	chr3:187454657-187454900(-)$1	243	231	239	15.0000
AGGUGGGG	chr1:91966342-91966585(+)$1	243	94	102	15.7777
GAGUGGGG	chr17:79877745-79878029(-)$1	284	58	66	15.8888
GGAUGGGG	chr11:47545971-47546217(-)$1	246	220	228	15.4444
GGGUGGGG	chr12:125398478-125398709(-)$1	231	52	60	19.5555
GGGCGGGG	chr10:1094477-1094789(-)$1	312	51	59	14.7777
GGGUGAGG	chr12:133405151-133405405(-)$1	254	15	23	16.0000
GGGUGGUG	chr15:64793367-64793618(+)$1	251	105	113	15.4444
GAGUGGGG	chr16:1726737-1726986(+)$1	249	129	137	15.8888
gggugugg	chr5:149877611-149877895(+)$1	284	120	128	15.8888
GGGUCGGG	chr13:27825738-27826072(+)$1	334	155	163	15.2222
GGGUGGAG	chr7:24613722-24613985(+)$1	263	224	232	15.3333
UGGUGGGG	chr18:74071955-74072293(-)$1	338	173	181	15.6666
GGGUGGUG	chr3:99569568-99569897(+)$1	329	269	277	15.4444
GGGUGCGG	chr14:39736506-39736741(+)$1	235	51	59	15.7777
UGGUGGGG	chr1:182360158-182360404(-)$1	246	25	33	15.6666
GGCUGGGG	chr1:32573829-32574100(+)$1	271	222	230	15.6666
GGGUGGAG	chr6:89791582-89791816(+)$1	234	92	100	15.3333
GAGUGGGG	chr11:47545045-47545281(-)$1	236	7	15	15.8888
UGGUGGGG	chr20:36145753-36145971(-)$1	218	209	217	15.6666
GGGUGUGG	chr19:49605795-49606016(+)$1	221	200	208	15.8888
GGAUGGGG	chr1:247094471-247094745(-)$1	274	16	24	15.4444
GAGUGGGG	chr2:239359822-239360057(+)$1	235	60	68	15.8888
GGGUGAGG	chr17:80789107-80789363(+)$1	256	196	204	16.0000

#otherMatches

#Struct PSSM
]eeeee]h	chr19:40790538-40790807(-)$1	269	134	142	19.5555
JJJJJJJB	chr11:940587-940837(+)$1	250	233	241	16.0000
GGGGLLLC	chr2:131806219-131806446(-)$1	227	30	38	15.8888
4444ccc]	chr3:53878534-53878785(-)$1	251	167	175	15.7777
ddd]hhhh	chr1:20237075-20237337(+)$1	262	241	249	19.5555
::eeeee[	chr11:47545206-47545443(-)$1	237	169	177	15.8888
HHHHHHHH	chr17:80816333-80816607(+)$1	274	105	113	15.6666
===[ccc[	chr17:30678484-30678730(+)$1	246	107	115	15.4444
eeee::::	chr21:30671740-30671987(+)$1	247	53	61	15.6666
:::DDDD{	chr2:118675180-118675419(-)$1	239	1	9	15.1111
DDDDcccd	chr11:940686-940966(+)$1	280	134	142	16.0000
====dddd	chr3:49130595-49130875(-)$1	280	205	213	15.1111
dddeeeee	chr17:79879026-79879313(-)$1	287	141	149	15.6666
EEEEEYYH	chr20:23357029-23357273(-)$1	244	228	236	15.7777
HHHHHHHY	chr2:85766812-85767140(+)$1	328	194	202	19.5555
Dddddddd	chr3:187454606-187454857(-)$1	251	188	196	15.0000
fff]cccb	chrX:17755979-17756226(+)$1	247	121	129	15.7777
f[bbccc[	chr19:54970219-54970463(+)$1	244	53	61	19.5555
eeeeehhh	chr11:111610074-111610317(-)$1	243	70	78	15.2222
iiicccmm	chr7:157130188-157130472(+)$1	284	132	140	15.7777
::::dddd	chr16:1726605-1726925(+)$1	320	261	269	15.8888
JJJJJJJ:	chr3:187454657-187454900(-)$1	243	231	239	15.0000
DDDD{A{D	chr1:91966342-91966585(+)$1	243	94	102	15.7777
ooooccc]	chr17:79877745-79878029(-)$1	284	58	66	15.8888
eeeee]ag	chr11:47545971-47546217(-)$1	246	220	228	15.4444
=======:	chr12:125398478-125398709(-)$1	231	52	60	19.5555
""eeeee!	chr10:1094477-1094789(-)$1	312	51	59	14.7777
:::::::f	chr12:133405151-133405405(-)$1	254	15	23	16.0000
eeeeemmm	chr15:64793367-64793618(+)$1	251	105	113	15.4444
JJJJJJJJ	chr16:1726737-1726986(+)$1	249	129	137	15.8888
ffffff[a	chr5:149877611-149877895(+)$1	284	120	128	15.8888
!dddd[cc	chr13:27825738-27826072(+)$1	334	155	163	15.2222
FFFFFF}B	chr7:24613722-24613985(+)$1	263	224	232	15.3333
:HHHHHHH	chr18:74071955-74072293(-)$1	338	173	181	15.6666
ccc]a]ee	chr3:99569568-99569897(+)$1	329	269	277	15.4444
ee]eeeee	chr14:39736506-39736741(+)$1	235	51	59	15.7777
::::::dd	chr1:182360158-182360404(-)$1	246	25	33	15.6666
ddd]a]gg	chr1:32573829-32574100(+)$1	271	222	230	15.6666
eeeepppp	chr6:89791582-89791816(+)$1	234	92	100	15.3333
B{DDDDNN	chr11:47545045-47545281(-)$1	236	7	15	15.8888
DFFFFFF:	chr20:36145753-36145971(-)$1	218	209	217	15.6666
EEE}BBGG	chr19:49605795-49606016(+)$1	221	200	208	15.8888
EE{DDDDe	chr1:247094471-247094745(-)$1	274	16	24	15.4444
gggggg[d	chr2:239359822-239360057(+)$1	235	60	68	15.8888
mmmmdddd	chr17:80789107-80789363(+)$1	256	196	204	16.0000

#DB
.))))).)	chr19:40790538-40790807(-)$1	1	134	142	19.5555
))))))))	chr11:940587-940837(+)$1	1	233	241	16.0000
((((...(	chr2:131806219-131806446(-)$1	1	30	38	15.8888
....))).	chr3:53878534-53878785(-)$1	1	167	175	15.7777
))).))))	chr1:20237075-20237337(+)$1	1	241	249	19.5555
..(((((.	chr11:47545206-47545443(-)$1	1	169	177	15.8888
))))))))	chr17:80816333-80816607(+)$1	1	105	113	15.6666
(((.(((.	chr17:30678484-30678730(+)$1	1	107	115	15.4444
))))....	chr21:30671740-30671987(+)$1	1	53	61	15.6666
...((((.	chr2:118675180-118675419(-)$1	1	1	9	15.1111
))))((((	chr11:940686-940966(+)$1	1	134	142	16.0000
))))((((	chr3:49130595-49130875(-)$1	1	205	213	15.1111
))))))))	chr17:79879026-79879313(-)$1	1	141	149	15.6666
)))))..)	chr20:23357029-23357273(-)$1	1	228	236	15.7777
))))))).	chr2:85766812-85767140(+)$1	1	194	202	19.5555
)(((((((	chr3:187454606-187454857(-)$1	1	188	196	15.0000
))).))))	chrX:17755979-17756226(+)$1	1	121	129	15.7777
(.(((((.	chr19:54970219-54970463(+)$1	1	53	61	19.5555
)))))(((	chr11:111610074-111610317(-)$1	1	70	78	15.2222
((((((..	chr7:157130188-157130472(+)$1	1	132	140	15.7777
....((((	chr16:1726605-1726925(+)$1	1	261	269	15.8888
))))))).	chr3:187454657-187454900(-)$1	1	231	239	15.0000
((((.(.(	chr1:91966342-91966585(+)$1	1	94	102	15.7777
....))).	chr17:79877745-79878029(-)$1	1	58	66	15.8888
))))).))	chr11:47545971-47546217(-)$1	1	220	228	15.4444
))))))).	chr12:125398478-125398709(-)$1	1	52	60	19.5555
..(((((.	chr10:1094477-1094789(-)$1	1	51	59	14.7777
.......(	chr12:133405151-133405405(-)$1	1	15	23	16.0000
(((((...	chr15:64793367-64793618(+)$1	1	105	113	15.4444
((((((((	chr16:1726737-1726986(+)$1	1	129	137	15.8888
((((((.(	chr5:149877611-149877895(+)$1	1	120	128	15.8888
.((((.((	chr13:27825738-27826072(+)$1	1	155	163	15.2222
)))))).)	chr7:24613722-24613985(+)$1	1	224	232	15.3333
.)))))))	chr18:74071955-74072293(-)$1	1	173	181	15.6666
))).).))	chr3:99569568-99569897(+)$1	1	269	277	15.4444
)).)))))	chr14:39736506-39736741(+)$1	1	51	59	15.7777
......((	chr1:182360158-182360404(-)$1	1	25	33	15.6666
))).).))	chr1:32573829-32574100(+)$1	1	222	230	15.6666
((((....	chr6:89791582-89791816(+)$1	1	92	100	15.3333
(.((((..	chr11:47545045-47545281(-)$1	1	7	15	15.8888
))))))).	chr20:36145753-36145971(-)$1	1	209	217	15.6666
))).))))	chr19:49605795-49606016(+)$1	1	200	208	15.8888
((.(((((	chr1:247094471-247094745(-)$1	1	16	24	15.4444
((((((.(	chr2:239359822-239360057(+)$1	1	60	68	15.8888
....))))	chr17:80789107-80789363(+)$1	1	196	204	16.0000

#PSSM
G : 0.82	A : 0.08	U : 0.06	g : 0.02	
G : 0.84	A : 0.13	g : 0.02	
G : 0.84	C : 0.08	A : 0.04	g : 0.02	
U : 0.95	C : 0.02	u : 0.02	
G : 0.88	C : 0.04	U : 0.02	A : 0.02	g : 0.02	
G : 0.80	A : 0.08	U : 0.04	C : 0.04	u : 0.02	
G : 0.86	U : 0.06	A : 0.04	g : 0.02	
G : 0.93	A : 0.04	g : 0.02	

#score	722.4444444444448
#seq	45
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_UTR_m3_run1.nuc.txt

#NT
GCU	chr15:52843290-52843555(-)$1	265	21	24	8.9999
GCU	chr11:62482628-62482899(-)$1	271	10	13	8.9999
GCU	chr17:49232911-49233123(+)$1	212	14	17	8.9999
GCU	chrX:47518413-47518630(-)$1	217	18	21	8.9999
GCU	chr1:156278665-156278911(-)$1	246	60	63	8.9999
GCU	chr11:62341202-62341433(-)$1	231	6	9	8.9999
GCU	chr6:31498036-31498311(-)$1	275	66	69	8.9999
GCU	chr19:54704627-54704857(+)$1	230	20	23	8.9999
GCU	chr5:179041637-179041883(-)$1	246	137	140	8.9999
GCU	chr1:1717342-1717586(-)$1	244	132	135	8.9999
GCU	chr16:227358-227617(+)$1	259	13	16	8.9999
GCU	chr7:128411336-128411583(+)$1	247	33	36	8.9999
GCU	chr16:30535504-30535815(-)$1	311	31	34	8.9999
GCU	chr20:34292171-34292454(-)$1	283	27	30	8.9999
GCU	chr1:45984600-45984826(-)$1	226	18	21	8.9999
GCU	chr6:75953332-75953598(-)$1	266	128	131	8.9999
GCU	chr6:32083062-32083337(-)$1	275	7	10	8.9999
GCU	chr19:46893629-46893902(+)$1	273	36	39	8.9999
GCU	chr1:228333111-228333409(+)$1	298	40	43	8.9999
GCU	chr1:84967407-84967625(-)$1	218	17	20	8.9999
GCU	chr16:1399228-1399528(-)$1	300	31	34	8.9999
GCU	chr19:3053636-3053896(-)$1	260	170	173	8.9999
GCU	chr17:40465253-40465501(-)$1	248	1	4	8.9999
GCU	chr22:38352675-38352951(+)$1	276	71	74	8.9999
GCU	chr1:20978612-20978835(-)$1	223	38	41	8.9999
GCU	chr21:45115737-45115990(+)$1	253	70	73	8.9999
GCU	chr15:75221356-75221603(-)$1	247	29	32	8.9999
GCU	chr6:33377459-33377714(+)$1	255	109	112	8.9999
GCU	chr18:19209033-19209281(+)$1	248	165	168	8.9999
gcu	chr7:148700585-148700858(-)$1	273	122	125	8.9999
GCU	chr5:43291032-43291283(-)$1	251	24	27	8.9999
GCU	chr14:104378841-104379098(-)$1	257	66	69	8.9999
GCU	chr17:47490503-47490754(-)$1	251	131	134	8.9999
GCU	chr6:160199698-160199978(+)$1	280	10	13	8.9999
GCU	chr16:21994357-21994651(+)$1	294	161	164	8.9999
GCU	chr8:101715421-101715638(-)$1	217	81	84	8.9999
GCU	chr11:10819000-10819308(-)$1	308	33	36	8.9999
GCU	chr3:179305969-179306286(+)$1	317	75	78	8.9999
GCU	chr12:54066258-54066491(-)$1	233	1	4	8.9999
GCU	chr16:31202716-31202973(+)$1	257	51	54	8.9999
gcu	chr16:31201527-31201820(+)$1	293	86	89	8.9999
GCU	chr22:20114635-20114903(+)$1	268	163	166	8.9999
GCU	chr11:18428686-18428920(+)$1	234	129	132	8.9999
gcu	chrX:102471941-102472188(+)$1	247	24	27	8.9999
GCU	chr17:1553852-1554106(-)$1	254	28	31	8.9999
GCU	chr17:80015703-80016048(-)$1	345	23	26	8.9999
GCU	chr6:41902884-41903132(-)$1	248	9	12	8.9999
GCU	chr5:137088380-137088621(-)$1	241	128	131	8.9999
GCU	chr1:154129870-154130113(-)$1	243	18	21	8.9999
GCU	chr15:64657702-64658035(-)$1	333	59	62	8.9999
GCU	chr12:74934806-74935068(+)$1	262	172	175	8.9999
GCU	chr12:57031899-57032149(-)$1	250	10	13	8.9999
GCU	chr16:30007488-30007776(+)$1	288	94	97	8.9999
GCU	chr5:140085297-140085561(+)$1	264	6	9	8.9999
GCU	chr17:61909618-61909878(-)$1	260	29	32	8.9999
GCU	chr1:110943853-110944117(-)$1	264	116	119	8.9999
GCU	chr2:96940391-96940663(-)$1	272	31	34	8.9999
GCU	chrX:102930559-102930777(-)$1	218	12	15	8.9999
GCU	chr21:35275677-35275971(-)$1	294	111	114	8.9999
GCU	chr8:21939704-21939993(+)$1	289	46	49	8.9999
GCU	chr12:118583220-118583469(+)$1	249	18	21	8.9999
GCU	chr6:33239753-33239961(+)$1	208	11	14	8.9999
GCU	chr1:39500012-39500281(+)$1	269	89	92	8.9999
GCU	chr1:25568851-25569126(-)$1	275	63	66	8.9999
GCU	chr4:6643515-6643806(+)$1	291	41	44	8.9999
GCU	chr11:70281279-70281524(+)$1	245	10	13	8.9999
GCU	chr12:57057470-57057725(-)$1	255	21	24	8.9999
GCU	chr1:93307348-93307575(+)$1	227	20	23	8.9999
GCU	chr12:56119176-56119456(-)$1	280	68	71	8.9999
GCU	chr13:27830334-27830571(+)$1	237	54	57	8.9999
GCU	chr1:155110874-155111119(+)$1	245	30	33	8.9999
GCU	chr8:101733999-101734203(-)$1	204	124	127	8.9999
GCU	chr6:30593885-30594159(+)$1	274	16	19	8.9999
GCU	chr1:32508370-32508627(+)$1	257	24	27	8.9999
GCU	chr19:19638715-19639086(+)$1	371	51	54	8.9999
GCU	chr1:226548510-226548753(-)$1	243	148	151	8.9999
GCU	chr5:256476-256795(+)$1	319	17	20	8.9999
GCU	chr16:88876377-88876625(-)$1	248	0	3	8.9999
GCU	chr4:140211032-140211338(-)$1	306	54	57	8.9999
GCU	chr17:79991721-79991993(+)$1	272	9	12	8.9999
GCU	chr6:75947520-75947804(-)$1	284	122	125	8.9999
GCU	chr12:120532918-120533193(-)$1	275	12	15	8.9999
GCU	chr4:174252888-174253172(-)$1	284	23	26	8.9999
GCU	chr6:33243641-33243845(+)$1	204	37	40	8.9999
GCU	chr6:27860393-27860633(-)$1	240	15	18	8.9999
GCU	chr20:57603705-57603998(-)$1	293	114	117	8.9999
GCU	chr16:29821946-29822198(+)$1	252	25	28	8.9999
GCU	chr17:56167543-56167797(+)$1	254	170	173	8.9999
GCU	chr1:220321129-220321375(+)$1	246	144	147	8.9999
GCU	chr2:198365044-198365263(+)$1	219	21	24	8.9999
GCU	chr9:113006218-113006464(-)$1	246	59	62	8.9999
GCU	chr5:110834582-110834844(-)$1	262	168	171	8.9999
GCU	chr16:31202677-31202916(+)$1	239	90	93	8.9999
GCU	chr2:55200010-55200268(-)$1	258	180	183	8.9999
GCU	chr17:36918562-36918843(+)$1	281	6	9	8.9999
GCU	chr16:723952-724206(+)$1	254	45	48	8.9999

#otherMatches

#Struct PSSM
f:i	chr1:43167585-43167854(+)$1	269	128	131	8.9999
FFF	chr15:52843290-52843555(-)$1	265	21	24	8.9999
mmm	chr11:62482628-62482899(-)$1	271	10	13	8.9999
ooo	chr17:49232911-49233123(+)$1	212	14	17	8.9999
ccb	chrX:47518413-47518630(-)$1	217	18	21	8.9999
!!e	chr1:156278665-156278911(-)$1	246	60	63	8.9999
GGG	chr11:62341202-62341433(-)$1	231	6	9	8.9999
bbb	chr6:31498036-31498311(-)$1	275	66	69	8.9999
eeH	chr19:54704627-54704857(+)$1	230	20	23	8.9999
bb:	chr5:179041637-179041883(-)$1	246	137	140	8.9999
GGG	chr1:1717342-1717586(-)$1	244	132	135	8.9999
EEE	chr16:227358-227617(+)$1	259	13	16	8.9999
fff	chr7:128411336-128411583(+)$1	247	33	36	8.9999
:ff	chr16:30535504-30535815(-)$1	311	31	34	8.9999
Dee	chr20:34292171-34292454(-)$1	283	27	30	8.9999
ddd	chr1:45984600-45984826(-)$1	226	18	21	8.9999
fff	chr6:75953332-75953598(-)$1	266	128	131	8.9999
JJJ	chr6:32083062-32083337(-)$1	275	7	10	8.9999
h""	chr19:46893629-46893902(+)$1	273	36	39	8.9999
$$$	chr1:228333111-228333409(+)$1	298	40	43	8.9999
a[c	chr1:84967407-84967625(-)$1	218	17	20	8.9999
HHH	chr16:1399228-1399528(-)$1	300	31	34	8.9999
ccc	chr19:3053636-3053896(-)$1	260	170	173	8.9999
CCC	chr17:40465253-40465501(-)$1	248	1	4	8.9999
ddd	chr22:38352675-38352951(+)$1	276	71	74	8.9999
uuu	chr1:20978612-20978835(-)$1	223	38	41	8.9999
tbb	chr21:45115737-45115990(+)$1	253	70	73	8.9999
::h	chr15:75221356-75221603(-)$1	247	29	32	8.9999
[dd	chr6:33377459-33377714(+)$1	255	109	112	8.9999
mme	chr18:19209033-19209281(+)$1	248	165	168	8.9999
nnn	chr7:148700585-148700858(-)$1	273	122	125	8.9999
bba	chr5:43291032-43291283(-)$1	251	24	27	8.9999
bbo	chr14:104378841-104379098(-)$1	257	66	69	8.9999
c]f	chr17:47490503-47490754(-)$1	251	131	134	8.9999
[cc	chr6:160199698-160199978(+)$1	280	10	13	8.9999
hhn	chr16:21994357-21994651(+)$1	294	161	164	8.9999
CCC	chr8:101715421-101715638(-)$1	217	81	84	8.9999
EEE	chr11:10819000-10819308(-)$1	308	33	36	8.9999
cc5	chr3:179305969-179306286(+)$1	317	75	78	8.9999
:::	chr12:54066258-54066491(-)$1	233	1	4	8.9999
gmm	chr16:31202716-31202973(+)$1	257	51	54	8.9999
lff	chr16:31201527-31201820(+)$1	293	86	89	8.9999
:::	chr22:20114635-20114903(+)$1	268	163	166	8.9999
ebb	chr11:18428686-18428920(+)$1	234	129	132	8.9999
irr	chrX:102471941-102472188(+)$1	247	24	27	8.9999
eee	chr17:1553852-1554106(-)$1	254	28	31	8.9999
DNN	chr17:80015703-80016048(-)$1	345	23	26	8.9999
KDD	chr6:41902884-41903132(-)$1	248	9	12	8.9999
88c	chr5:137088380-137088621(-)$1	241	128	131	8.9999
ee[	chr1:154129870-154130113(-)$1	243	18	21	8.9999
ddd	chr15:64657702-64658035(-)$1	333	59	62	8.9999
err	chr12:74934806-74935068(+)$1	262	172	175	8.9999
ddd	chr12:57031899-57032149(-)$1	250	10	13	8.9999
DDY	chr16:30007488-30007776(+)$1	288	94	97	8.9999
ddd	chr5:140085297-140085561(+)$1	264	6	9	8.9999
HHH	chr17:61909618-61909878(-)$1	260	29	32	8.9999
cc3	chr1:110943853-110944117(-)$1	264	116	119	8.9999
eee	chr2:96940391-96940663(-)$1	272	31	34	8.9999
FFF	chrX:102930559-102930777(-)$1	218	12	15	8.9999
33d	chr21:35275677-35275971(-)$1	294	111	114	8.9999
ddd	chr8:21939704-21939993(+)$1	289	46	49	8.9999
mmm	chr12:118583220-118583469(+)$1	249	18	21	8.9999
ddd	chr6:33239753-33239961(+)$1	208	11	14	8.9999
hhh	chr1:39500012-39500281(+)$1	269	89	92	8.9999
e&&	chr1:25568851-25569126(-)$1	275	63	66	8.9999
C::	chr4:6643515-6643806(+)$1	291	41	44	8.9999
hh!	chr11:70281279-70281524(+)$1	245	10	13	8.9999
ddd	chr12:57057470-57057725(-)$1	255	21	24	8.9999
EEE	chr1:93307348-93307575(+)$1	227	20	23	8.9999
nnn	chr12:56119176-56119456(-)$1	280	68	71	8.9999
ddd	chr13:27830334-27830571(+)$1	237	54	57	8.9999
fff	chr1:155110874-155111119(+)$1	245	30	33	8.9999
ee$	chr8:101733999-101734203(-)$1	204	124	127	8.9999
qdd	chr6:30593885-30594159(+)$1	274	16	19	8.9999
qqq	chr1:32508370-32508627(+)$1	257	24	27	8.9999
EEE	chr19:19638715-19639086(+)$1	371	51	54	8.9999
2dd	chr1:226548510-226548753(-)$1	243	148	151	8.9999
DDD	chr5:256476-256795(+)$1	319	17	20	8.9999
ccc	chr16:88876377-88876625(-)$1	248	0	3	8.9999
eee	chr4:140211032-140211338(-)$1	306	54	57	8.9999
ggg	chr17:79991721-79991993(+)$1	272	9	12	8.9999
ggg	chr6:75947520-75947804(-)$1	284	122	125	8.9999
===	chr12:120532918-120533193(-)$1	275	12	15	8.9999
II:	chr4:174252888-174253172(-)$1	284	23	26	8.9999
b[a	chr6:33243641-33243845(+)$1	204	37	40	8.9999
FFF	chr6:27860393-27860633(-)$1	240	15	18	8.9999
:dd	chr20:57603705-57603998(-)$1	293	114	117	8.9999
ddd	chr16:29821946-29822198(+)$1	252	25	28	8.9999
hhh	chr17:56167543-56167797(+)$1	254	170	173	8.9999
CKK	chr1:220321129-220321375(+)$1	246	144	147	8.9999
c[b	chr2:198365044-198365263(+)$1	219	21	24	8.9999
ddd	chr9:113006218-113006464(-)$1	246	59	62	8.9999
555	chr5:110834582-110834844(-)$1	262	168	171	8.9999
gmm	chr16:31202677-31202916(+)$1	239	90	93	8.9999
ccc	chr2:55200010-55200268(-)$1	258	180	183	8.9999
CKK	chr17:36918562-36918843(+)$1	281	6	9	8.9999
ddd	chr16:723952-724206(+)$1	254	45	48	8.9999

#DB
).(	chr1:43167585-43167854(+)$1	1	128	131	8.9999
(((	chr15:52843290-52843555(-)$1	1	21	24	8.9999
...	chr11:62482628-62482899(-)$1	1	10	13	8.9999
...	chr17:49232911-49233123(+)$1	1	14	17	8.9999
(((	chrX:47518413-47518630(-)$1	1	18	21	8.9999
..(	chr1:156278665-156278911(-)$1	1	60	63	8.9999
(((	chr11:62341202-62341433(-)$1	1	6	9	8.9999
(((	chr6:31498036-31498311(-)$1	1	66	69	8.9999
))(	chr19:54704627-54704857(+)$1	1	20	23	8.9999
)).	chr5:179041637-179041883(-)$1	1	137	140	8.9999
(((	chr1:1717342-1717586(-)$1	1	132	135	8.9999
(((	chr16:227358-227617(+)$1	1	13	16	8.9999
(((	chr7:128411336-128411583(+)$1	1	33	36	8.9999
.((	chr16:30535504-30535815(-)$1	1	31	34	8.9999
(((	chr20:34292171-34292454(-)$1	1	27	30	8.9999
(((	chr1:45984600-45984826(-)$1	1	18	21	8.9999
(((	chr6:75953332-75953598(-)$1	1	128	131	8.9999
(((	chr6:32083062-32083337(-)$1	1	7	10	8.9999
(..	chr19:46893629-46893902(+)$1	1	36	39	8.9999
...	chr1:228333111-228333409(+)$1	1	40	43	8.9999
(.(	chr1:84967407-84967625(-)$1	1	17	20	8.9999
(((	chr16:1399228-1399528(-)$1	1	31	34	8.9999
)))	chr19:3053636-3053896(-)$1	1	170	173	8.9999
(((	chr17:40465253-40465501(-)$1	1	1	4	8.9999
(((	chr22:38352675-38352951(+)$1	1	71	74	8.9999
...	chr1:20978612-20978835(-)$1	1	38	41	8.9999
.))	chr21:45115737-45115990(+)$1	1	70	73	8.9999
..(	chr15:75221356-75221603(-)$1	1	29	32	8.9999
.((	chr6:33377459-33377714(+)$1	1	109	112	8.9999
..)	chr18:19209033-19209281(+)$1	1	165	168	8.9999
...	chr7:148700585-148700858(-)$1	1	122	125	8.9999
(((	chr5:43291032-43291283(-)$1	1	24	27	8.9999
((.	chr14:104378841-104379098(-)$1	1	66	69	8.9999
).)	chr17:47490503-47490754(-)$1	1	131	134	8.9999
.((	chr6:160199698-160199978(+)$1	1	10	13	8.9999
((.	chr16:21994357-21994651(+)$1	1	161	164	8.9999
(((	chr8:101715421-101715638(-)$1	1	81	84	8.9999
(((	chr11:10819000-10819308(-)$1	1	33	36	8.9999
)).	chr3:179305969-179306286(+)$1	1	75	78	8.9999
...	chr12:54066258-54066491(-)$1	1	1	4	8.9999
(..	chr16:31202716-31202973(+)$1	1	51	54	8.9999
.))	chr16:31201527-31201820(+)$1	1	86	89	8.9999
...	chr22:20114635-20114903(+)$1	1	163	166	8.9999
(((	chr11:18428686-18428920(+)$1	1	129	132	8.9999
(..	chrX:102471941-102472188(+)$1	1	24	27	8.9999
(((	chr17:1553852-1554106(-)$1	1	28	31	8.9999
(..	chr17:80015703-80016048(-)$1	1	23	26	8.9999
.((	chr6:41902884-41903132(-)$1	1	9	12	8.9999
..)	chr5:137088380-137088621(-)$1	1	128	131	8.9999
((.	chr1:154129870-154130113(-)$1	1	18	21	8.9999
)))	chr15:64657702-64658035(-)$1	1	59	62	8.9999
(..	chr12:74934806-74935068(+)$1	1	172	175	8.9999
(((	chr12:57031899-57032149(-)$1	1	10	13	8.9999
)).	chr16:30007488-30007776(+)$1	1	94	97	8.9999
(((	chr5:140085297-140085561(+)$1	1	6	9	8.9999
(((	chr17:61909618-61909878(-)$1	1	29	32	8.9999
)).	chr1:110943853-110944117(-)$1	1	116	119	8.9999
)))	chr2:96940391-96940663(-)$1	1	31	34	8.9999
(((	chrX:102930559-102930777(-)$1	1	12	15	8.9999
..)	chr21:35275677-35275971(-)$1	1	111	114	8.9999
)))	chr8:21939704-21939993(+)$1	1	46	49	8.9999
...	chr12:118583220-118583469(+)$1	1	18	21	8.9999
(((	chr6:33239753-33239961(+)$1	1	11	14	8.9999
)))	chr1:39500012-39500281(+)$1	1	89	92	8.9999
(..	chr1:25568851-25569126(-)$1	1	63	66	8.9999
(..	chr4:6643515-6643806(+)$1	1	41	44	8.9999
((.	chr11:70281279-70281524(+)$1	1	10	13	8.9999
(((	chr12:57057470-57057725(-)$1	1	21	24	8.9999
(((	chr1:93307348-93307575(+)$1	1	20	23	8.9999
...	chr12:56119176-56119456(-)$1	1	68	71	8.9999
)))	chr13:27830334-27830571(+)$1	1	54	57	8.9999
(((	chr1:155110874-155111119(+)$1	1	30	33	8.9999
((.	chr8:101733999-101734203(-)$1	1	124	127	8.9999
.))	chr6:30593885-30594159(+)$1	1	16	19	8.9999
...	chr1:32508370-32508627(+)$1	1	24	27	8.9999
(((	chr19:19638715-19639086(+)$1	1	51	54	8.9999
.))	chr1:226548510-226548753(-)$1	1	148	151	8.9999
(((	chr5:256476-256795(+)$1	1	17	20	8.9999
(((	chr16:88876377-88876625(-)$1	1	0	3	8.9999
)))	chr4:140211032-140211338(-)$1	1	54	57	8.9999
(((	chr17:79991721-79991993(+)$1	1	9	12	8.9999
(((	chr6:75947520-75947804(-)$1	1	122	125	8.9999
(((	chr12:120532918-120533193(-)$1	1	12	15	8.9999
((.	chr4:174252888-174253172(-)$1	1	23	26	8.9999
(.(	chr6:33243641-33243845(+)$1	1	37	40	8.9999
(((	chr6:27860393-27860633(-)$1	1	15	18	8.9999
.((	chr20:57603705-57603998(-)$1	1	114	117	8.9999
)))	chr16:29821946-29822198(+)$1	1	25	28	8.9999
(((	chr17:56167543-56167797(+)$1	1	170	173	8.9999
(..	chr1:220321129-220321375(+)$1	1	144	147	8.9999
(.(	chr2:198365044-198365263(+)$1	1	21	24	8.9999
)))	chr9:113006218-113006464(-)$1	1	59	62	8.9999
...	chr5:110834582-110834844(-)$1	1	168	171	8.9999
(..	chr16:31202677-31202916(+)$1	1	90	93	8.9999
)))	chr2:55200010-55200268(-)$1	1	180	183	8.9999
(..	chr17:36918562-36918843(+)$1	1	6	9	8.9999
(((	chr16:723952-724206(+)$1	1	45	48	8.9999

#PSSM
G : 0.96	g : 0.03	
C : 0.96	c : 0.03	
U : 0.96	u : 0.03	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_transcript_m3_run1.nuc.txt

#NT
GGGGCAGG	chr19:13107060-13107337(+)$1	277	266	274	16.1538
GGGGCUGC	chr10:80829491-80829740(+)$1	249	227	235	15.3076
agggcugg	chr8:42396296-42396529(-)$1	233	47	55	15.8461
GGGGCUGU	chr14:100027883-100028140(-)$1	257	132	140	15.1538
GAGGCUGG	chr22:50738964-50739197(-)$1	233	43	51	15.0769
ugggcugg	chr5:139030900-139031157(+)$1	257	67	75	16.3076
GGGCCUGG	chr7:73869534-73869832(+)$1	298	58	66	15.9999
GGGGCUUG	chr16:2803062-2803284(+)$1	222	162	170	14.8461
GUGGCUGG	chr3:187459386-187459645(-)$1	259	32	40	15.1538
ggggcggg	chr20:31171931-31172250(+)$1	319	56	64	15.9999
ggggcugg	chr16:87426116-87426425(+)$1	309	157	165	19.5384
UGGGCUGG	chr2:220151093-220151357(+)$1	264	211	219	16.3076
GGGGCUGG	chr11:2932386-2932691(+)$1	305	273	281	19.5384
CGGGCUGG	chr6:64282626-64282898(+)$1	272	25	33	15.7692
ugggcugg	chr7:2673901-2674218(+)$1	317	32	40	16.3076
GGAGCUGG	chr9:137308231-137308487(+)$1	256	113	121	15.1538
AGGGCUGG	chrX:152911973-152912181(+)$1	208	96	104	15.8461
GGGGCAGG	chr7:2684744-2685002(+)$1	258	137	145	16.1538
GGGGCCGG	chr10:35103106-35103352(-)$1	246	111	119	16.0769
GGGGCCGG	chr4:6912267-6912529(+)$1	262	36	44	16.0769
GGGGCUGG	chr17:38334321-38334610(+)$1	289	17	25	19.5384
GUGGCUGG	chr9:136922713-136923013(-)$1	300	38	46	15.1538
GGGCCUGG	chr3:160282693-160282966(-)$1	273	2	10	15.9999
GGGGCUGC	chr19:1474682-1474941(-)$1	259	49	57	15.3076
GGGCCUGG	chr20:10655302-10655585(+)$1	283	269	277	15.9999
GGGCCUGG	chr11:854233-854474(+)$1	241	72	80	15.9999
GGGGCUGG	chr17:79973325-79973614(+)$1	289	156	164	19.5384
GGGGCGGG	chr12:133098454-133098789(+)$1	335	49	57	15.9999
UGGGCUGG	chr17:63526788-63527039(-)$1	251	212	220	16.3076
GGGGCUGC	chr4:1236277-1236516(-)$1	239	124	132	15.3076
GGGCCUGG	chr16:75285523-75285780(-)$1	257	60	68	15.9999
GGAGCUGG	chr13:28713103-28713375(+)$1	272	9	17	15.1538
UGGGCUGG	chr4:1240733-1240996(-)$1	263	154	162	16.3076
UGGGCUGG	chr8:144674515-144674759(-)$1	244	156	164	16.3076
GGAGCUGG	chr16:29912180-29912513(+)$1	333	243	251	15.1538
ggggcggg	chr21:46708235-46708514(+)$1	279	3	11	15.9999
GAGGCUGG	chr12:125038857-125039109(-)$1	252	180	188	15.0769
GGGACUGG	chr20:3451843-3452093(+)$1	250	2	10	15.5384
GGGGCUGG	chr21:44495437-44495700(-)$1	263	7	15	19.5384
GGGGCCGG	chr6:158981399-158981661(+)$1	262	58	66	16.0769
UGGGCUGG	chr16:88576242-88576495(+)$1	253	175	183	16.3076
GGGACUGG	chr5:179230399-179230689(-)$1	290	133	141	15.5384
GGGGCGGG	chr19:42757422-42757697(-)$1	275	92	100	15.9999
GGGGCAGG	chr19:2271149-2271447(+)$1	298	51	59	16.1538
CGGGCUGG	chr19:960415-960689(+)$1	274	127	135	15.7692
GGGCCUGG	chr3:194977795-194978065(-)$1	270	39	47	15.9999
GGGCCUGG	chr12:133090217-133090484(+)$1	267	166	174	15.9999
GGGGCUGU	chr19:59080397-59080666(+)$1	269	34	42	15.1538
UGGGCUGG	chr1:167191174-167191434(+)$1	260	23	31	16.3076
GGGGCCGG	chr14:92572449-92572709(-)$1	260	67	75	16.0769
GGCGCUGG	chr2:235861047-235861294(+)$1	247	233	241	15.0769
GGGGCUGG	chr9:136711314-136711599(-)$1	285	137	145	19.5384
GGGGCCGG	chr6:11044135-11044433(-)$1	298	109	117	16.0769
GGGGCAGG	chr17:79961594-79961877(+)$1	283	242	250	16.1538
ggggcugg	chr21:46708167-46708435(+)$1	268	61	69	19.5384
gggucugg	chr6:160182730-160182994(-)$1	264	139	147	15.4615
GGGCCUGG	chr7:158184613-158184842(-)$1	229	173	181	15.9999
GGGGCUUG	chr19:11025633-11025913(+)$1	280	104	112	14.8461
GGGGCUGC	chr7:1134762-1135007(-)$1	245	31	39	15.3076
AGGGCUGG	chr7:2678567-2678827(+)$1	260	217	225	15.8461
GGGGCAGG	chr20:31058510-31058766(-)$1	256	107	115	16.1538
GGGGCAGG	chr6:159240066-159240414(-)$1	348	209	217	16.1538
UGGGCUGG	chr7:47447719-47448008(-)$1	289	274	282	16.3076
GGCGCUGG	chr5:139028837-139029058(+)$1	221	49	57	15.0769

#otherMatches

#Struct PSSM
{IIIIIII	chr6:41516497-41516764(+)$1	267	132	140	15.1538
ddhhhhhh	chr19:13107060-13107337(+)$1	277	266	274	16.1538
eeeellle	chr10:80829491-80829740(+)$1	249	227	235	15.3076
]ccc22ff	chr8:42396296-42396529(-)$1	233	47	55	15.8461
FFFFF:ee	chr14:100027883-100028140(-)$1	257	132	140	15.1538
4444dddd	chr22:50738964-50739197(-)$1	233	43	51	15.0769
lllccc]d	chr5:139030900-139031157(+)$1	257	67	75	16.3076
JJJJJ{AB	chr7:73869534-73869832(+)$1	298	58	66	15.9999
edddd:EE	chr16:2803062-2803284(+)$1	222	162	170	14.8461
EEE{FFFF	chr3:187459386-187459645(-)$1	259	32	40	15.1538
mmmmdddd	chr20:31171931-31172250(+)$1	319	56	64	15.9999
bb22====	chr16:87426116-87426425(+)$1	309	157	165	19.5384
eeee[ddd	chr2:220151093-220151357(+)$1	264	211	219	16.3076
A}HHHHHH	chr11:2932386-2932691(+)$1	305	273	281	19.5384
FFFFFFDD	chr6:64282626-64282898(+)$1	272	25	33	15.7692
"eeeeedd	chr7:2673901-2674218(+)$1	317	32	40	16.3076
IIIIIIII	chr9:137308231-137308487(+)$1	256	113	121	15.1538
llgggggg	chrX:152911973-152912181(+)$1	208	96	104	15.8461
bb]hhhhh	chr7:2684744-2685002(+)$1	258	137	145	16.1538
mmm=====	chr10:35103106-35103352(-)$1	246	111	119	16.0769
]=======	chr4:6912267-6912529(+)$1	262	36	44	16.0769
GLLLHHHH	chr17:38334321-38334610(+)$1	289	17	25	19.5384
mmdddd::	chr9:136922713-136923013(-)$1	300	38	46	15.1538
DDDD:::=	chr3:160282693-160282966(-)$1	273	2	10	15.9999
fffff[dd	chr19:1474682-1474941(-)$1	259	49	57	15.3076
EEEEE}GG	chr20:10655302-10655585(+)$1	283	269	277	15.9999
###bbnnn	chr11:854233-854474(+)$1	241	72	80	15.9999
EEEEE}BB	chr17:79973325-79973614(+)$1	289	156	164	19.5384
pppppbb]	chr12:133098454-133098789(+)$1	335	49	57	15.9999
[ddddooo	chr17:63526788-63527039(-)$1	251	212	220	16.3076
hhhhhh]a	chr4:1236277-1236516(-)$1	239	124	132	15.3076
eeeeccce	chr16:75285523-75285780(-)$1	257	60	68	15.9999
BB{CCC{D	chr13:28713103-28713375(+)$1	272	9	17	15.1538
[eeeee[f	chr4:1240733-1240996(-)$1	263	154	162	16.3076
ddoooooo	chr8:144674515-144674759(-)$1	244	156	164	16.3076
dd!!dddd	chr16:29912180-29912513(+)$1	333	243	251	15.1538
========	chr21:46708235-46708514(+)$1	279	3	11	15.9999
::ddddmm	chr12:125038857-125039109(-)$1	252	180	188	15.0769
A{EEEEEL	chr20:3451843-3452093(+)$1	250	2	10	15.5384
dd[eeeee	chr21:44495437-44495700(-)$1	263	7	15	19.5384
vva]bb]a	chr6:158981399-158981661(+)$1	262	58	66	16.0769
hhhhhccc	chr16:88576242-88576495(+)$1	253	175	183	16.3076
HHHHHHHH	chr5:179230399-179230689(-)$1	290	133	141	15.5384
iccc[ggg	chr19:42757422-42757697(-)$1	275	92	100	15.9999
HHHHHHH{	chr19:2271149-2271447(+)$1	298	51	59	16.1538
MEEEEECC	chr19:960415-960689(+)$1	274	127	135	15.7692
gggggggc	chr3:194977795-194978065(-)$1	270	39	47	15.9999
hhhhhhbb	chr12:133090217-133090484(+)$1	267	166	174	15.9999
CCMMMMGG	chr19:59080397-59080666(+)$1	269	34	42	15.1538
!ddddggg	chr1:167191174-167191434(+)$1	260	23	31	16.3076
eCCCKKEE	chr14:92572449-92572709(-)$1	260	67	75	16.0769
lllccc]c	chr2:235861047-235861294(+)$1	247	233	241	15.0769
KGGGGGGG	chr9:136711314-136711599(-)$1	285	137	145	19.5384
cc[fffff	chr6:11044135-11044433(-)$1	298	109	117	16.0769
pppppppc	chr17:79961594-79961877(+)$1	283	242	250	16.1538
JJJ:dddd	chr21:46708167-46708435(+)$1	268	61	69	19.5384
iiiiii%%	chr6:160182730-160182994(-)$1	264	139	147	15.4615
ddeeeeeb	chr7:158184613-158184842(-)$1	229	173	181	15.9999
iiiiiiii	chr19:11025633-11025913(+)$1	280	104	112	14.8461
&eeeee[d	chr7:1134762-1135007(-)$1	245	31	39	15.3076
hhhhhhcc	chr7:2678567-2678827(+)$1	260	217	225	15.8461
JJJJJ::e	chr20:31058510-31058766(-)$1	256	107	115	16.1538
]dddd22b	chr6:159240066-159240414(-)$1	348	209	217	16.1538
HHHHHH}B	chr7:47447719-47448008(-)$1	289	274	282	16.3076
ma]ggggg	chr5:139028837-139029058(+)$1	221	49	57	15.0769

#DB
.(((((((	chr6:41516497-41516764(+)$1	1	132	140	15.1538
))))))))	chr19:13107060-13107337(+)$1	1	266	274	16.1538
((((...)	chr10:80829491-80829740(+)$1	1	227	235	15.3076
.)))..))	chr8:42396296-42396529(-)$1	1	47	55	15.8461
))))).((	chr14:100027883-100028140(-)$1	1	132	140	15.1538
....))))	chr22:50738964-50739197(-)$1	1	43	51	15.0769
...))).)	chr5:139030900-139031157(+)$1	1	67	75	16.3076
(((((.((	chr7:73869534-73869832(+)$1	1	58	66	15.9999
))))).))	chr16:2803062-2803284(+)$1	1	162	170	14.8461
(((.((((	chr3:187459386-187459645(-)$1	1	32	40	15.1538
....))))	chr20:31171931-31172250(+)$1	1	56	64	15.9999
))..))))	chr16:87426116-87426425(+)$1	1	157	165	19.5384
((((.(((	chr2:220151093-220151357(+)$1	1	211	219	16.3076
).))))))	chr11:2932386-2932691(+)$1	1	273	281	19.5384
((((((((	chr6:64282626-64282898(+)$1	1	25	33	15.7692
.(((((((	chr7:2673901-2674218(+)$1	1	32	40	16.3076
))))))))	chr9:137308231-137308487(+)$1	1	113	121	15.1538
..))))))	chrX:152911973-152912181(+)$1	1	96	104	15.8461
)).)))))	chr7:2684744-2685002(+)$1	1	137	145	16.1538
...)))))	chr10:35103106-35103352(-)$1	1	111	119	16.0769
.)))))))	chr4:6912267-6912529(+)$1	1	36	44	16.0769
(...((((	chr17:38334321-38334610(+)$1	1	17	25	19.5384
..))))..	chr9:136922713-136923013(-)$1	1	38	46	15.1538
((((...(	chr3:160282693-160282966(-)$1	1	2	10	15.9999
(((((.((	chr19:1474682-1474941(-)$1	1	49	57	15.3076
))))).))	chr20:10655302-10655585(+)$1	1	269	277	15.9999
...((...	chr11:854233-854474(+)$1	1	72	80	15.9999
))))).))	chr17:79973325-79973614(+)$1	1	156	164	19.5384
.....)).	chr12:133098454-133098789(+)$1	1	49	57	15.9999
.((((...	chr17:63526788-63527039(-)$1	1	212	220	16.3076
)))))).)	chr4:1236277-1236516(-)$1	1	124	132	15.3076
)))))))(	chr16:75285523-75285780(-)$1	1	60	68	15.9999
((.(((.(	chr13:28713103-28713375(+)$1	1	9	17	15.1538
.(((((.(	chr4:1240733-1240996(-)$1	1	154	162	16.3076
((......	chr8:144674515-144674759(-)$1	1	156	164	16.3076
((..((((	chr16:29912180-29912513(+)$1	1	243	251	15.1538
((((((((	chr21:46708235-46708514(+)$1	1	3	11	15.9999
..((((..	chr12:125038857-125039109(-)$1	1	180	188	15.0769
(.(((((.	chr20:3451843-3452093(+)$1	1	2	10	15.5384
((.(((((	chr21:44495437-44495700(-)$1	1	7	15	19.5384
..).)).)	chr6:158981399-158981661(+)$1	1	58	66	16.0769
))))))))	chr16:88576242-88576495(+)$1	1	175	183	16.3076
((((((((	chr5:179230399-179230689(-)$1	1	133	141	15.5384
)(((.(((	chr19:42757422-42757697(-)$1	1	92	100	15.9999
(((((((.	chr19:2271149-2271447(+)$1	1	51	59	16.1538
.(((((((	chr19:960415-960689(+)$1	1	127	135	15.7692
((((((((	chr3:194977795-194978065(-)$1	1	39	47	15.9999
((((((((	chr12:133090217-133090484(+)$1	1	166	174	15.9999
((....((	chr19:59080397-59080666(+)$1	1	34	42	15.1538
.(((((((	chr1:167191174-167191434(+)$1	1	23	31	16.3076
)(((..((	chr14:92572449-92572709(-)$1	1	67	75	16.0769
...))).)	chr2:235861047-235861294(+)$1	1	233	241	15.0769
.(((((((	chr9:136711314-136711599(-)$1	1	137	145	19.5384
((.(((((	chr6:11044135-11044433(-)$1	1	109	117	16.0769
.......)	chr17:79961594-79961877(+)$1	1	242	250	16.1538
(((.((((	chr21:46708167-46708435(+)$1	1	61	69	19.5384
((((((..	chr6:160182730-160182994(-)$1	1	139	147	15.4615
))((((((	chr7:158184613-158184842(-)$1	1	173	181	15.9999
((((((((	chr19:11025633-11025913(+)$1	1	104	112	14.8461
.(((((.(	chr7:1134762-1135007(-)$1	1	31	39	15.3076
))))))((	chr7:2678567-2678827(+)$1	1	217	225	15.8461
(((((..(	chr20:31058510-31058766(-)$1	1	107	115	16.1538
.))))..)	chr6:159240066-159240414(-)$1	1	209	217	16.1538
)))))).)	chr7:47447719-47448008(-)$1	1	274	282	16.3076
.).)))))	chr5:139028837-139029058(+)$1	1	49	57	15.0769

#PSSM
G : 0.70	U : 0.10	g : 0.07	u : 0.03	C : 0.03	A : 0.03	a : 0.01	
G : 0.79	g : 0.12	U : 0.04	A : 0.03	
G : 0.79	g : 0.12	A : 0.04	C : 0.03	
G : 0.72	C : 0.12	g : 0.10	A : 0.03	u : 0.01	
C : 0.87	c : 0.12	
U : 0.67	A : 0.09	u : 0.09	C : 0.07	g : 0.03	G : 0.03	
G : 0.84	g : 0.12	U : 0.03	
G : 0.78	g : 0.12	C : 0.06	U : 0.03	

#score	1050.9230769230765
#seq	65
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_UTR_m2_run1.nuc.txt

#NT
UGGCAGUGGGGAGGGG	chr3:138553468-138553740(-)$1	272	44	60	21.0357
GACCUGCGGGGCGGGG	chr16:11036097-11036387(-)$1	290	137	153	17.7321
GGGUGGGCGCGCGGGG	chr4:78078349-78078664(+)$1	315	109	125	18.8035
gggggccggggagggu	chr2:54197781-54198040(-)$1	259	66	82	20.2321
GGCCGGCAGGGCCGGG	chr8:145159357-145159696(+)$1	339	193	209	18.4464
GGGCCACGGGGAGAGG	chr9:140099878-140100131(-)$1	253	190	206	18.1785
GGGCGCGGGGGUCGGG	chr1:87380370-87380636(+)$1	266	32	48	18.8928
gggcgggcgggcgggc	chr10:129924405-129924702(-)$1	297	41	57	21.4821
GGGGAGGGGAGAGGGG	chr1:11740929-11741277(-)$1	348	188	204	20.2321
gggcggagggcggggg	chr19:1592442-1592778(-)$1	336	2	18	23.4464
GGGCGGGGUCGAGGGG	chr22:18232770-18233023(-)$1	253	188	204	22.0178
GGGCUGCGGGCAGUGG	chr2:55646609-55646916(-)$1	307	161	177	19.0714
GGGCCGCGGGGCGGGG	chr1:6845435-6845745(+)$1	310	44	60	25.3214
GGGCCGCGAGGCGCGG	chr16:730440-730711(+)$1	271	31	47	16.6607
GGGCGGAGGGGAUGAG	chr6:44224415-44224706(-)$1	291	37	53	21.3928
GUGCGGCGCGGCGGGU	chr3:51422663-51422928(+)$1	265	35	51	17.7321
gaggggaagggagggg	chr15:65477471-65477777(-)$1	306	67	83	20.2321
GGGCGGGACAGAGGGG	chr3:38206951-38207254(+)$1	303	101	117	19.3392
GGGCGGUGGGGAGGAG	chr7:77166502-77166764(+)$1	262	208	224	25.2321
GGGGAGUGGGGAUGGG	chr16:70433288-70433536(-)$1	248	189	205	18.8928
gggcggcgggcucggg	chr14:96001321-96001588(+)$1	267	193	209	21.1249
ggccugcgggggaggg	chr3:195635566-195635828(-)$1	262	84	100	17.0178
GCGCCGAGGGGAGGAG	chr19:1407575-1407876(+)$1	301	24	40	18.5357
GUACGGUGGGGUGGGG	chr19:2426002-2426239(-)$1	237	72	88	18.6250
cggcggcggcgCGGUG	chr17:2496901-2497195(+)$1	294	0	16	17.3749
GCGCGGGGCGGAGGGC	chr5:142782920-142783230(-)$1	310	234	250	19.3392
GGGCGGGUGGGUGGUG	chr19:6772669-6772982(+)$1	313	90	106	20.0535
GGGUGGCAGGGGGGGG	chr12:111180478-111180752(-)$1	274	100	116	23.3571
gggcggcggccgggcg	chr11:44117270-44117503(+)$1	233	149	165	17.9999
gggcggcggggagggg	chr19:3062263-3062521(-)$1	258	83	99	30.8571
GGCCAGAGCGGAGGGG	chr4:103790087-103790445(+)$1	358	106	122	17.5535
UUGGGGCGGGGAGGGG	chr19:4038376-4038642(+)$1	266	52	68	20.7678
gggggggugggagggg	chr6:34664379-34664664(-)$1	285	84	100	24.0714
GGGUGGGGGUGAGGGG	chr12:58145880-58146155(-)$1	275	38	54	23.4464
GGGAGGCCGAGACGGG	chr8:74884210-74884507(-)$1	297	248	264	17.6428
GGGCGGGGGGGCGGGC	chr3:160283039-160283342(-)$1	303	87	103	24.6071
GGGUGGCAGGGGGGGG	chr12:111180411-111180678(-)$1	267	26	42	23.3571
UGGUGGCGGGGAGGGA	chr14:32546368-32546625(+)$1	257	8	24	20.3214
GGGCGGCUGUGAGGAG	chr21:46644309-46644582(+)$1	273	200	216	20.3214
GGGCGGGCCGGAGGGC	chr14:50359877-50360216(+)$1	339	203	219	19.4285
gggcggcggccgggcg	chr11:44117204-44117470(+)$1	266	215	231	17.9999
GCCGGGCGGGCAGGGG	chr7:148395940-148396195(+)$1	255	1	17	17.8214
GCGCGGCGGGAGGAGG	chr11:17298196-17298472(+)$1	276	70	86	17.1964
GCGUGGCAGGGAGGGC	chr20:3740627-3740930(-)$1	303	163	179	19.0714
uggcggcggagggggg	chr22:19419003-19419262(-)$1	259	91	107	21.2142
ggggggcgggaccggg	chr4:2936006-2936281(-)$1	275	55	71	18.9821
gggcggcgggcgggAG	chr1:233749793-233750159(+)$1	366	9	25	21.5714
gcggggcgggGAGGGC	chr19:56166195-56166479(+)$1	284	113	129	22.1964
GGGGGGAUGGGAGGGC	chr17:62501969-62502238(-)$1	269	81	97	20.4107
gggugggggggagggg	chr15:64752858-64753145(+)$1	287	63	79	27.1071
GGGCGGUGGAGAGCGG	chr9:139743355-139743605(+)$1	250	47	63	21.1249
GAGCGGCGGCGACGGC	chr19:1249810-1250086(+)$1	276	85	101	17.1964
ggacggaggggcggug	chr2:97535520-97535792(-)$1	272	42	58	19.1607
GGGCGGAGGGGAGGGG	chr11:58346510-58346785(+)$1	275	99	115	29.0714
GCGUGGUCGGGAGGGG	chr14:50359733-50359978(+)$1	245	22	38	20.0535

#otherMatches

#Struct PSSM
bb[dddd[dddd[a[a	chr6:149638909-149639174(+)$1	265	73	89	20.4999
dmmmmdddd4444a33	chr3:138553468-138553740(-)$1	272	44	60	21.0357
B{FFFFFFdddd[bb[	chr16:11036097-11036387(-)$1	290	137	153	17.7321
b]bb]ccc]eeeeecc	chr4:78078349-78078664(+)$1	315	109	125	18.8035
::eeeeeooooooeee	chr2:54197781-54198040(-)$1	259	66	82	20.2321
%%eeeeellleeeee6	chr8:145159357-145159696(+)$1	339	193	209	18.4464
iccc:::dddd"""am	chr9:140099878-140100131(-)$1	253	190	206	18.1785
eee[dddd!!ffffff	chr1:87380370-87380636(+)$1	266	32	48	18.8928
III{BBBB{DDDD{CC	chr10:129924405-129924702(-)$1	297	41	57	21.4821
DD{AEEEEE{DDDD{H	chr1:11740929-11741277(-)$1	348	188	204	20.2321
:EEEEE{EEEEEFFFF	chr19:1592442-1592778(-)$1	336	2	18	23.4464
===::DDDD}A}A}DD	chr22:18232770-18233023(-)$1	253	188	204	22.0178
J{EEEEEeeeee[eee	chr2:55646609-55646916(-)$1	307	161	177	19.0714
c[ffffffbb[ggggg	chr1:6845435-6845745(+)$1	310	44	60	25.3214
{EEEEE:a[ffffff!	chr16:730440-730711(+)$1	271	31	47	16.6607
ddddhhhhhhhh"""a	chr6:44224415-44224706(-)$1	291	37	53	21.3928
DLLLHHHHHHHHNNNN	chr3:51422663-51422928(+)$1	265	35	51	17.7321
:::CCCPPPPPPPA{D	chr15:65477471-65477777(-)$1	306	67	83	20.2321
EEEEE{A:::::::dd	chr3:38206951-38207254(+)$1	303	101	117	19.3392
::eeeeexxxxxxxxx	chr7:77166502-77166764(+)$1	262	208	224	25.2321
b]dddd]eeeee:EEE	chr16:70433288-70433536(-)$1	248	189	205	18.8928
nnnnnccc]hhhhhhh	chr14:96001321-96001588(+)$1	267	193	209	21.1249
fffff:EEEEEYYHHH	chr3:195635566-195635828(-)$1	262	84	100	17.0178
IIIIICCCffffff""	chr19:1407575-1407876(+)$1	301	24	40	18.5357
dd333ffffff]ccc]	chr19:2426002-2426239(-)$1	237	72	88	18.6250
::bb!!ffffff!!bb	chr17:2496901-2497195(+)$1	294	0	16	17.3749
HHGGGGGGG}CCCeee	chr5:142782920-142783230(-)$1	310	234	250	19.3392
CCCKKGGGGGGG{BBB	chr19:6772669-6772982(+)$1	313	90	106	20.0535
dhhhhhhhh[bba[bb	chr12:111180478-111180752(-)$1	274	100	116	23.3571
ccc[ccc!!ffffff"	chr11:44117270-44117503(+)$1	233	149	165	17.9999
:CCC}DDDDZZZBB}B	chr19:3062263-3062521(-)$1	258	83	99	30.8571
gggg]a]dddd]cccD	chr4:103790087-103790445(+)$1	358	106	122	17.5535
bb22ccc]dddd]a]b	chr19:4038376-4038642(+)$1	266	52	68	20.7678
EEEEEMMMMEEEEEee	chr6:34664379-34664664(-)$1	285	84	100	24.0714
GGG{BBDDDDHHHHHH	chr12:58145880-58146155(-)$1	275	38	54	23.4464
e"""a[bboooooobb	chr8:74884210-74884507(-)$1	297	248	264	17.6428
c]dddd]a]ccc]hhh	chr3:160283039-160283342(-)$1	303	87	103	24.6071
e[eeeee[cccooooo	chr12:111180411-111180678(-)$1	267	26	42	23.3571
D:eeeee[bb^^^^^^	chr14:32546368-32546625(+)$1	257	8	24	20.3214
"""eeeee[annnnna	chr21:46644309-46644582(+)$1	273	200	216	20.3214
ffffddddCCC}A}EE	chr14:50359877-50360216(+)$1	339	203	219	19.4285
2ccc]eeeee::HHHH	chr11:44117204-44117470(+)$1	266	215	231	17.9999
CCDDDDADDDDKKCCC	chr7:148395940-148396195(+)$1	255	1	17	17.8214
GGGGGGG{A:::::::	chr11:17298196-17298472(+)$1	276	70	86	17.1964
6666gggggggeeeee	chr20:3740627-3740930(-)$1	303	163	179	19.0714
g]bbCCC{DDDD{FFF	chr22:19419003-19419262(-)$1	259	91	107	21.2142
c]a333ccc22ccc33	chr4:2936006-2936281(-)$1	275	55	71	18.9821
hhh[ccc[cccggggg	chr1:233749793-233750159(+)$1	366	9	25	21.5714
[bb"""ccc%%%%%%f	chr19:56166195-56166479(+)$1	284	113	129	22.1964
]bbdddd[ffffff$$	chr17:62501969-62502238(-)$1	269	81	97	20.4107
!a[bb[dddd"""ggg	chr15:64752858-64753145(+)$1	287	63	79	27.1071
:DDDD{ALLLHHHHHH	chr9:139743355-139743605(+)$1	250	47	63	21.1249
"iiiiiiiiimmmmii	chr19:1249810-1250086(+)$1	276	85	101	17.1964
JJJJJJJJ{FFFFFFK	chr2:97535520-97535792(-)$1	272	42	58	19.1607
EE}EEEEEBB{AKKDD	chr11:58346510-58346785(+)$1	275	99	115	29.0714
bb"""===========	chr14:50359733-50359978(+)$1	245	22	38	20.0535

#DB
((.((((.((((.(.(	chr6:149638909-149639174(+)$1	1	73	89	20.4999
(....))))....)..	chr3:138553468-138553740(-)$1	1	44	60	21.0357
(.((((((((((.((.	chr16:11036097-11036387(-)$1	1	137	153	17.7321
).)).))).)))))))	chr4:78078349-78078664(+)$1	1	109	125	18.8035
..(((((......)))	chr2:54197781-54198040(-)$1	1	66	82	20.2321
..(((((...))))).	chr8:145159357-145159696(+)$1	1	193	209	18.4464
))))...((((...(.	chr9:140099878-140100131(-)$1	1	190	206	18.1785
(((.((((..((((((	chr1:87380370-87380636(+)$1	1	32	48	18.8928
(((.((((.((((.((	chr10:129924405-129924702(-)$1	1	41	57	21.4821
((.((((((.((((.(	chr1:11740929-11741277(-)$1	1	188	204	20.2321
.(((((.(((((((((	chr19:1592442-1592778(-)$1	1	2	18	23.4464
)))..)))).).).))	chr22:18232770-18233023(-)$1	1	188	204	22.0178
(.((((((((((.(((	chr2:55646609-55646916(-)$1	1	161	177	19.0714
(.((((((((.(((((	chr1:6845435-6845745(+)$1	1	44	60	25.3214
.(((((.(.((((((.	chr16:730440-730711(+)$1	1	31	47	16.6607
))))((((((((...(	chr6:44224415-44224706(-)$1	1	37	53	21.3928
(...((((((((....	chr3:51422663-51422928(+)$1	1	35	51	17.7321
...(((.......(.(	chr15:65477471-65477777(-)$1	1	67	83	20.2321
(((((.(.......((	chr3:38206951-38207254(+)$1	1	101	117	19.3392
..(((((.........	chr7:77166502-77166764(+)$1	1	208	224	25.2321
).)))).))))).)))	chr16:70433288-70433536(-)$1	1	189	205	18.8928
.....))).)))))))	chr14:96001321-96001588(+)$1	1	193	209	21.1249
))))).)))))..)))	chr3:195635566-195635828(-)$1	1	84	100	17.0178
((((((((((((((..	chr19:1407575-1407876(+)$1	1	24	40	18.5357
))...)))))).))).	chr19:2426002-2426239(-)$1	1	72	88	18.6250
..((..((((((..((	chr17:2496901-2497195(+)$1	1	0	16	17.3749
))))))))).)))(((	chr5:142782920-142783230(-)$1	1	234	250	19.3392
(((..(((((((.(((	chr19:6772669-6772982(+)$1	1	90	106	20.0535
(((((((((.(((.((	chr12:111180478-111180752(-)$1	1	100	116	23.3571
(((.(((..((((((.	chr11:44117270-44117503(+)$1	1	149	165	17.9999
.))).))))...)).)	chr19:3062263-3062521(-)$1	1	83	99	30.8571
)))).).)))).)))(	chr4:103790087-103790445(+)$1	1	106	122	17.5535
))..))).)))).).)	chr19:4038376-4038642(+)$1	1	52	68	20.7678
(((((....(((((((	chr6:34664379-34664664(-)$1	1	84	100	24.0714
(((.((((((((((((	chr12:58145880-58146155(-)$1	1	38	54	23.4464
(...(.((......))	chr8:74884210-74884507(-)$1	1	248	264	17.6428
).)))).).))).)))	chr3:160283039-160283342(-)$1	1	87	103	24.6071
(.(((((.(((.....	chr12:111180411-111180678(-)$1	1	26	42	23.3571
(.(((((.((......	chr14:32546368-32546625(+)$1	1	8	24	20.3214
...(((((.(.....)	chr21:46644309-46644582(+)$1	1	200	216	20.3214
))))))))))).).))	chr14:50359877-50360216(+)$1	1	203	219	19.4285
.))).)))))..))))	chr11:44117204-44117470(+)$1	1	215	231	17.9999
(((((((((((..(((	chr7:148395940-148396195(+)$1	1	1	17	17.8214
(((((((.(.......	chr11:17298196-17298472(+)$1	1	70	86	17.1964
....))))))))))))	chr20:3740627-3740930(-)$1	1	163	179	19.0714
).))(((.((((.(((	chr22:19419003-19419262(-)$1	1	91	107	21.2142
).)...)))..)))..	chr4:2936006-2936281(-)$1	1	55	71	18.9821
(((.(((.((((((((	chr1:233749793-233750159(+)$1	1	9	25	21.5714
.((...(((......(	chr19:56166195-56166479(+)$1	1	113	129	22.1964
.))((((.((((((..	chr17:62501969-62502238(-)$1	1	81	97	20.4107
.(.((.((((...(((	chr15:64752858-64753145(+)$1	1	63	79	27.1071
.((((.(...((((((	chr9:139743355-139743605(+)$1	1	47	63	21.1249
.(((((((((....))	chr19:1249810-1250086(+)$1	1	85	101	17.1964
((((((((.((((((.	chr2:97535520-97535792(-)$1	1	42	58	19.1607
)).)))))((.(..((	chr11:58346510-58346785(+)$1	1	99	115	29.0714
((...(((((((((((	chr14:50359733-50359978(+)$1	1	22	38	20.0535

#PSSM
G : 0.62	g : 0.28	U : 0.05	c : 0.01	u : 0.01	
G : 0.48	g : 0.28	C : 0.10	U : 0.05	A : 0.03	a : 0.01	c : 0.01	
G : 0.58	g : 0.28	C : 0.07	c : 0.01	A : 0.01	a : 0.01	
C : 0.44	c : 0.19	U : 0.12	g : 0.08	G : 0.08	a : 0.01	A : 0.01	u : 0.01	
G : 0.49	g : 0.30	A : 0.07	C : 0.07	U : 0.03	u : 0.01	
G : 0.64	g : 0.30	c : 0.01	A : 0.01	C : 0.01	
C : 0.30	c : 0.19	G : 0.17	U : 0.10	A : 0.08	g : 0.07	a : 0.05	
G : 0.46	g : 0.24	A : 0.08	C : 0.07	U : 0.05	a : 0.03	c : 0.01	u : 0.01	
G : 0.55	g : 0.32	C : 0.08	U : 0.01	A : 0.01	
G : 0.51	g : 0.24	A : 0.07	C : 0.05	c : 0.05	U : 0.03	a : 0.01	
G : 0.64	g : 0.19	c : 0.08	C : 0.03	A : 0.01	a : 0.01	
A : 0.46	C : 0.14	a : 0.10	g : 0.10	U : 0.05	c : 0.05	G : 0.05	u : 0.01	
G : 0.60	g : 0.23	C : 0.07	U : 0.03	c : 0.03	a : 0.01	
G : 0.62	g : 0.28	A : 0.03	C : 0.03	U : 0.01	
G : 0.60	g : 0.21	A : 0.08	U : 0.03	c : 0.03	u : 0.01	
G : 0.57	g : 0.21	C : 0.12	c : 0.03	u : 0.01	U : 0.01	A : 0.01	

#score	1150.8571428571427
#seq	56
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_CDS_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
gggggggggggg(((((((((==========[cccddddqqqqqqqqdddd0000000000ccc==========0000000000ggggggg:FFFFFFYYGGGGGGGgggggggcccooooooccc22ggggggg::EEEEELLLBBEEEEEdddd!!eeeeeooooooeeeeedddd::::::::::ccc!!ccc[ccc[ccclllccc]ccc]ccc4444cccEEEEE}BB~~~~EEEEE	chrX:132887833-132888119(-)$1	286	43	285	726.0000

#DB
)))))(((((((.........((((((((((.(((((((........))))..........)))))))))))))..........))))))).))))))..)))))))((((((((((......)))..)))))))..(((((...(((((((((((..(((((......)))))))))..........(((..(((.(((.(((...))).))).)))....)))))))).))....)))))	chrX:132887833-132888119(-)$1	1	43	285	726.0000

#PSSM
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	

#score	726.0
#seq	1
#width	242
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_UTR_m3_run2.nuc.txt

#NT
GCAGCUGGUG	chr19:41119495-41119741(+)$1	246	66	76	13.0701
GGAGCAGGCC	chr8:11710803-11711089(-)$1	286	178	188	13.8596
GGAGCUGGCU	chr7:108210274-108210662(+)$1	388	79	89	15.1754
GGAGGAGGAG	chr7:77166715-77166978(+)$1	263	4	14	14.0350
GGAGUUGGAG	chr14:50359733-50359978(+)$1	245	96	106	16.2280
GGCGGUGGAG	chr9:139743355-139743605(+)$1	250	16	26	12.6315
ggggcgggac	chr4:2936006-2936281(-)$1	275	57	67	12.8947
GGAGGCGGAG	chr16:11036097-11036387(-)$1	290	48	58	14.0350
GGAGCUGCAG	chr3:160283039-160283342(-)$1	303	63	73	15.4385
GGAGUGGGAG	chr20:62330172-62330424(-)$1	252	71	81	14.2105
GGAUGUGGAG	chr7:150028704-150029008(+)$1	304	110	120	11.9298
gcagguggag	chr17:43225854-43226086(+)$1	232	2	12	12.3684
GGAGGAGGAG	chr19:56632442-56632729(-)$1	287	150	160	14.0350
CGAGCUGGUG	chr3:195635566-195635828(-)$1	262	46	56	12.6315
GGGGCUGGUG	chr22:50018375-50018652(-)$1	277	34	44	13.7719
GGAUGUGGAG	chr12:22199105-22199464(+)$1	359	95	105	11.9298
ggagccgggc	chr2:54197781-54198040(-)$1	259	157	167	14.1228
GGAGGAGGAC	chr8:25315623-25315952(-)$1	329	133	143	12.7192
GGAGCUGUGC	chr6:10749374-10749604(+)$1	230	15	25	12.2807
AGAGCUGGCC	chr19:44118326-44118659(-)$1	333	135	145	11.6666
GGACCUGGAC	chr17:46128066-46128360(+)$1	294	136	146	13.6842
GGAGCUGGGG	chr12:132402685-132403025(+)$1	340	141	151	17.8947
GGAGCUGGAG	chr19:1388467-1388691(+)$1	224	4	14	19.6491
GGGGCUGGGA	chr16:70433288-70433536(-)$1	248	32	42	12.7192
GGAGCGGGUG	chr19:1407575-1407876(+)$1	301	123	133	15.1754
CGAGCUGGAA	chr14:50359877-50360216(+)$1	339	12	22	13.3333
GGAGCUGGAG	chr17:2496901-2497195(+)$1	294	50	60	19.6491
GGAGCGGGAA	chr19:47634055-47634387(+)$1	332	303	313	15.8771
GGAGCUGCCG	chr22:18232770-18233023(-)$1	253	118	128	13.4210
GGAGCCGGGC	chr19:1592442-1592778(-)$1	336	135	145	14.1228
GGUGCUGGCC	chr8:41456448-41456717(+)$1	269	182	192	12.4561
GGUGCUGGAA	chr6:43737928-43738161(+)$1	233	140	150	14.0350
GGAGUCGGAC	chr2:61765037-61765289(-)$1	252	159	169	12.4561
GGGGCUGGGG	chr3:195635820-195636063(-)$1	243	8	18	14.4736
GGAGCCGGAC	chr16:2301217-2301494(-)$1	277	158	168	15.8771
GGAGCUGUCG	chr17:47784990-47785319(-)$1	329	48	58	13.3333
GGAGCUCGAG	chrX:149106831-149107146(+)$1	315	84	94	14.9122
ggggcugggc	chr19:34287181-34287442(+)$1	261	3	13	13.1578
GGCGCUGGGU	chr3:49507704-49507971(+)$1	267	154	164	11.5789
GGAGCUGGAA	chr2:230786496-230786759(-)$1	263	243	253	17.8947
ggagugggag	chr6:86352802-86353106(-)$1	304	206	216	14.2105
ggagcgggga	chr19:3062263-3062521(-)$1	258	70	80	14.1228
GGAGCGGAAG	chr17:73401487-73401824(-)$1	337	57	67	13.2456
GGGGCUGGGA	chr15:74702096-74702361(-)$1	265	90	100	12.7192
GGGGCGGGAG	chr2:171785700-171786016(+)$1	316	99	109	14.2105
GGAGCAGGCC	chr7:65338179-65338425(+)$1	246	19	29	13.8596
GGAGCUGCAG	chr19:2236081-2236355(-)$1	274	125	135	15.4385
GGAGCUGGGA	chr1:153918926-153919191(-)$1	265	132	142	16.1403
GCAGCUGGGG	chr16:70432980-70433263(-)$1	283	103	113	13.7719
GGAGCGGGAA	chr19:50168666-50168911(-)$1	245	70	80	15.8771
GGAGCUGGAG	chr9:100818962-100819254(+)$1	292	136	146	19.6491
GCAGCGGGAG	chr20:30539573-30539876(-)$1	303	47	57	13.5087
GGAGCUUGAC	chr19:3506246-3506574(+)$1	328	272	282	13.5964
gcagcgggag	chr7:44887466-44887728(-)$1	262	109	119	13.5087
GGAGCAGGCC	chr1:156024536-156024810(+)$1	274	46	56	13.8596
GGAGUUGGCA	chrX:122993946-122994222(+)$1	276	91	101	12.4561

#otherMatches

#Struct PSSM
]a]ccc333c	chr15:64752858-64753145(+)$1	287	39	49	17.1929
vvvvccc]ee	chr19:41119495-41119741(+)$1	246	66	76	13.0701
DDDD}CCC::	chr8:11710803-11711089(-)$1	286	178	188	13.8596
C{DDDD{BB{	chr7:108210274-108210662(+)$1	388	79	89	15.1754
:DDDD{GGGG	chr7:77166715-77166978(+)$1	263	4	14	14.0350
FFFFFFhhhh	chr14:50359733-50359978(+)$1	245	96	106	16.2280
::DDDDeeee	chr9:139743355-139743605(+)$1	250	16	26	12.6315
a333ccc22c	chr4:2936006-2936281(-)$1	275	57	67	12.8947
DDDDccc[a[	chr16:11036097-11036387(-)$1	290	48	58	14.0350
"""ccc[a!!	chr3:160283039-160283342(-)$1	303	63	73	15.4385
ddd:gggggg	chr20:62330172-62330424(-)$1	252	71	81	14.2105
::EEEEE::a	chr7:150028704-150029008(+)$1	304	110	120	11.9298
::::::::::	chr17:43225854-43226086(+)$1	232	2	12	12.3684
wa]cccbb]a	chr19:56632442-56632729(-)$1	287	150	160	14.0350
EE:ffffff[	chr3:195635566-195635828(-)$1	262	46	56	12.6315
[dddd[bb[d	chr22:50018375-50018652(-)$1	277	34	44	13.7719
cmmmmccc::	chr12:22199105-22199464(+)$1	359	95	105	11.9298
cc[ccc[ccc	chr2:54197781-54198040(-)$1	259	157	167	14.1228
cqqqqqqqqc	chr8:25315623-25315952(-)$1	329	133	143	12.7192
HHHDDDDKKD	chr6:10749374-10749604(+)$1	230	15	25	12.2807
gggeeeee22	chr19:44118326-44118659(-)$1	333	135	145	11.6666
bb]cccBB}C	chr17:46128066-46128360(+)$1	294	136	146	13.6842
mma]bb]ccc	chr12:132402685-132403025(+)$1	340	141	151	17.8947
FF:ggggggg	chr19:1388467-1388691(+)$1	224	4	14	19.6491
[eeeeepppp	chr16:70433288-70433536(-)$1	248	32	42	12.7192
cc]dddd]bb	chr19:1407575-1407876(+)$1	301	123	133	15.1754
hhhh[cccrr	chr14:50359877-50360216(+)$1	339	12	22	13.3333
ffffffDDDD	chr17:2496901-2497195(+)$1	294	50	60	19.6491
BYYBB_____	chr19:47634055-47634387(+)$1	332	303	313	15.8771
dd:::DDDD{	chr22:18232770-18233023(-)$1	253	118	128	13.4210
{A:iiiiiii	chr19:1592442-1592778(-)$1	336	135	145	14.1228
dddmmmmddd	chr8:41456448-41456717(+)$1	269	182	192	12.4561
gggggggddd	chr6:43737928-43738161(+)$1	233	140	150	14.0350
ffff[bb!!d	chr2:61765037-61765289(-)$1	252	159	169	12.4561
:eeeee####	chr3:195635820-195636063(-)$1	243	8	18	14.4736
4444dddd:b	chr16:2301217-2301494(-)$1	277	158	168	15.8771
====cccddd	chr17:47784990-47785319(-)$1	329	48	58	13.3333
b!!adddd""	chrX:149106831-149107146(+)$1	315	84	94	14.9122
EEEEEEE{GG	chr19:34287181-34287442(+)$1	261	3	13	13.1578
gg]ccceeee	chr3:49507704-49507971(+)$1	267	154	164	11.5789
ccc[bbrrrr	chr2:230786496-230786759(-)$1	263	243	253	17.8947
qqqdddd22b	chr6:86352802-86353106(-)$1	304	206	216	14.2105
]a:bbooooo	chr19:3062263-3062521(-)$1	258	70	80	14.1228
fffff55555	chr17:73401487-73401824(-)$1	337	57	67	13.2456
c]eeeee444	chr15:74702096-74702361(-)$1	265	90	100	12.7192
ffffffbb]b	chr2:171785700-171786016(+)$1	316	99	109	14.2105
gg$$$$$ggg	chr7:65338179-65338425(+)$1	246	19	29	13.8596
a22fffffff	chr19:2236081-2236355(-)$1	274	125	135	15.4385
"""ccc[a!!	chr1:153918926-153919191(-)$1	265	132	142	16.1403
]a]dddd]ee	chr16:70432980-70433263(-)$1	283	103	113	13.7719
6666dddd::	chr19:50168666-50168911(-)$1	245	70	80	15.8771
h333ccc333	chr9:100818962-100819254(+)$1	292	136	146	19.6491
ffff::FFFF	chr20:30539573-30539876(-)$1	303	47	57	13.5087
HH}DDDDYYD	chr19:3506246-3506574(+)$1	328	272	282	13.5964
ee[ccc[amm	chr7:44887466-44887728(-)$1	262	109	119	13.5087
fttttttttt	chr1:156024536-156024810(+)$1	274	46	56	13.8596
dd22eeeee3	chrX:122993946-122994222(+)$1	276	91	101	12.4561

#DB
.).)))...)	chr15:64752858-64753145(+)$1	1	39	49	17.1929
....))).))	chr19:41119495-41119741(+)$1	1	66	76	13.0701
)))).)))..	chr8:11710803-11711089(-)$1	1	178	188	13.8596
(.((((.((.	chr7:108210274-108210662(+)$1	1	79	89	15.1754
.((((.((((	chr7:77166715-77166978(+)$1	1	4	14	14.0350
((((((((((	chr14:50359733-50359978(+)$1	1	96	106	16.2280
..((((((((	chr9:139743355-139743605(+)$1	1	16	26	12.6315
)...)))..)	chr4:2936006-2936281(-)$1	1	57	67	12.8947
(((((((.(.	chr16:11036097-11036387(-)$1	1	48	58	14.0350
...(((.(..	chr3:160283039-160283342(-)$1	1	63	73	15.4385
))).((((((	chr20:62330172-62330424(-)$1	1	71	81	14.2105
..(((((..(	chr7:150028704-150029008(+)$1	1	110	120	11.9298
..........	chr17:43225854-43226086(+)$1	1	2	12	12.3684
.).))))).)	chr19:56632442-56632729(-)$1	1	150	160	14.0350
((.((((((.	chr3:195635566-195635828(-)$1	1	46	56	12.6315
.((((.((.(	chr22:50018375-50018652(-)$1	1	34	44	13.7719
(....)))..	chr12:22199105-22199464(+)$1	1	95	105	11.9298
((.(((.(((	chr2:54197781-54198040(-)$1	1	157	167	14.1228
(........)	chr8:25315623-25315952(-)$1	1	133	143	12.7192
(((((((..(	chr6:10749374-10749604(+)$1	1	15	25	12.2807
))))))))..	chr19:44118326-44118659(-)$1	1	135	145	11.6666
)).))))).)	chr17:46128066-46128360(+)$1	1	136	146	13.6842
..).)).)))	chr12:132402685-132403025(+)$1	1	141	151	17.8947
((.(((((((	chr19:1388467-1388691(+)$1	1	4	14	19.6491
.(((((....	chr16:70433288-70433536(-)$1	1	32	42	12.7192
)).)))).))	chr19:1407575-1407876(+)$1	1	123	133	15.1754
((((.(((..	chr14:50359877-50360216(+)$1	1	12	22	13.3333
))))))((((	chr17:2496901-2497195(+)$1	1	50	60	19.6491
)..)).....	chr19:47634055-47634387(+)$1	1	303	313	15.8771
))...((((.	chr22:18232770-18233023(-)$1	1	118	128	13.4210
.(.(((((((	chr19:1592442-1592778(-)$1	1	135	145	14.1228
(((....)))	chr8:41456448-41456717(+)$1	1	182	192	12.4561
)))))))(((	chr6:43737928-43738161(+)$1	1	140	150	14.0350
((((.((..(	chr2:61765037-61765289(-)$1	1	159	169	12.4561
.(((((....	chr3:195635820-195636063(-)$1	1	8	18	14.4736
....)))).(	chr16:2301217-2301494(-)$1	1	158	168	15.8771
((((((((((	chr17:47784990-47785319(-)$1	1	48	58	13.3333
(..(((((..	chrX:149106831-149107146(+)$1	1	84	94	14.9122
(((((((.((	chr19:34287181-34287442(+)$1	1	3	13	13.1578
)).)))))))	chr3:49507704-49507971(+)$1	1	154	164	11.5789
(((.((....	chr2:230786496-230786759(-)$1	1	243	253	17.8947
...))))..)	chr6:86352802-86353106(-)$1	1	206	216	14.2105
.).((.....	chr19:3062263-3062521(-)$1	1	70	80	14.1228
))))).....	chr17:73401487-73401824(-)$1	1	57	67	13.2456
).)))))...	chr15:74702096-74702361(-)$1	1	90	100	12.7192
)))))))).)	chr2:171785700-171786016(+)$1	1	99	109	14.2105
((.....(((	chr7:65338179-65338425(+)$1	1	19	29	13.8596
)..)))))))	chr19:2236081-2236355(-)$1	1	125	135	15.4385
...(((.(..	chr1:153918926-153919191(-)$1	1	132	142	16.1403
.).)))).))	chr16:70432980-70433263(-)$1	1	103	113	13.7719
....))))..	chr19:50168666-50168911(-)$1	1	70	80	15.8771
)...)))...	chr9:100818962-100819254(+)$1	1	136	146	19.6491
))))..((((	chr20:30539573-30539876(-)$1	1	47	57	13.5087
)).))))..)	chr19:3506246-3506574(+)$1	1	272	282	13.5964
((.(((.(..	chr7:44887466-44887728(-)$1	1	109	119	13.5087
(.........	chr1:156024536-156024810(+)$1	1	46	56	13.8596
))..))))).	chrX:122993946-122994222(+)$1	1	91	101	12.4561

#PSSM
G : 0.80	g : 0.14	C : 0.03	A : 0.01	
G : 0.80	g : 0.10	C : 0.05	c : 0.03	
A : 0.70	a : 0.10	G : 0.08	C : 0.03	g : 0.03	U : 0.03	
G : 0.80	g : 0.14	U : 0.03	C : 0.01	
C : 0.66	G : 0.12	c : 0.10	U : 0.07	g : 0.01	u : 0.01	
U : 0.56	G : 0.12	A : 0.10	g : 0.07	C : 0.07	c : 0.03	u : 0.03	
G : 0.82	g : 0.14	C : 0.01	U : 0.01	
G : 0.75	g : 0.14	C : 0.05	U : 0.03	A : 0.01	
A : 0.47	C : 0.15	G : 0.15	a : 0.08	U : 0.07	g : 0.05	
G : 0.45	C : 0.21	A : 0.15	g : 0.07	c : 0.05	U : 0.03	a : 0.01	

#score	812.1052631578955
#seq	57
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_UTR_m3_run2.nuc.txt

#NT
ggggcccg	chr1:228270388-228270677(+)$1	289	248	256	15.7708
GGGGCCGG	chr2:159314501-159314807(+)$1	306	37	45	12.8541
gggccccg	chr1:1208692-1208958(-)$1	266	44	52	18.8958
GGGCUCCG	chr8:71314076-71314346(-)$1	270	117	125	14.4166
GGGUCCUG	chr8:144566868-144567119(-)$1	251	229	237	13.2708
GGGCCCCA	chr16:89556787-89557033(-)$1	246	98	106	15.7708
GGGCCCCA	chr1:26232150-26232455(-)$1	305	51	59	15.7708
GGGCCCCG	chr3:33481597-33481848(-)$1	251	183	191	18.8958
GGGCCCCA	chr8:142441443-142441697(+)$1	254	230	238	15.7708
GGGCCCCG	chr20:62330172-62330433(-)$1	261	115	123	18.8958
GGGCCCUG	chr22:20109990-20110237(+)$1	247	182	190	16.8125
GGGGCCAG	chr1:2326204-2326449(+)$1	245	80	88	12.8541
GGGCCGCG	chr16:67596184-67596450(-)$1	266	32	40	14.2083
GGGCGCCG	chr2:20549855-20550091(-)$1	236	5	13	14.4166
GGGCCCCU	chr20:62330008-62330269(-)$1	261	39	47	15.0416
GGGUCCUG	chr20:62330650-62330905(-)$1	255	203	211	13.2708
GGGACCUG	chr3:128211820-128212101(+)$1	281	10	18	13.0625
gcgccccg	chr9:139560088-139560356(+)$1	268	164	172	14.1041
GGGCCCCG	chr16:30959854-30960149(+)$1	295	194	202	18.8958
UGGCCCCG	chr7:925104-925356(+)$1	252	124	132	14.5208
GGGCCCGG	chr19:42788120-42788363(+)$1	243	204	212	15.9791
CGGCCCCG	chr19:42759090-42759332(-)$1	242	6	14	14.4166
GGGCCCCA	chr19:41770614-41770899(+)$1	285	238	246	15.7708
GGGCCCAG	chr1:36789531-36789831(+)$1	300	208	216	15.9791
AGGCCCCG	chr19:1416417-1416678(+)$1	261	122	130	14.4166
GGGCCCCG	chr15:93426452-93426739(+)$1	287	178	186	18.8958
GGGCCCCG	chr5:133340035-133340325(-)$1	290	90	98	18.8958
GGGCCCUG	chr20:62331052-62331312(-)$1	260	39	47	16.8125
ggggccag	chr7:2147098-2147358(-)$1	260	40	48	12.8541
GGGCCCCG	chr2:97535518-97535833(-)$1	315	258	266	18.8958
GGGCCCUG	chr20:62331121-62331354(-)$1	233	81	89	16.8125
GGGCCCCG	chr1:202776311-202776604(-)$1	293	143	151	18.8958
GGGCCCCA	chr7:924766-925021(+)$1	255	122	130	15.7708
ggggcccg	chr7:157130044-157130366(+)$1	322	93	101	15.7708
UGGCCCCG	chr17:7477339-7477619(+)$1	280	250	258	14.5208
GGGCACCG	chr17:79878711-79878942(-)$1	231	201	209	14.5208
GGGCCCUG	chr20:62330411-62330645(-)$1	234	27	35	16.8125
GGGGCCGG	chr16:4660789-4661039(-)$1	250	124	132	12.8541
GGGGCCCG	chr2:232574480-232574757(+)$1	277	166	174	15.7708
GGGCCCUG	chr12:133337679-133337982(-)$1	303	18	26	16.8125
GGGCCCUA	chr19:1473815-1474058(-)$1	243	178	186	13.6875
GGGCCCUA	chr19:1473748-1474015(-)$1	267	135	143	13.6875
GGGCACCG	chr17:80871549-80871806(+)$1	257	137	145	14.5208
GGGCCUCG	chr3:128209211-128209433(+)$1	222	0	8	14.2083
GGGUCCCG	chr21:44495750-44495990(-)$1	240	166	174	15.3541
GGGCCCCC	chr1:36789969-36790219(+)$1	250	92	100	15.0416
GGGCCCCA	chr16:2580595-2580934(+)$1	339	100	108	15.7708

#otherMatches

#Struct PSSM
FFFFF:cc	chr4:891781-892047(-)$1	266	8	16	16.8125
HHYYGGGG	chr1:228270388-228270677(+)$1	289	248	256	15.7708
CCDDDDMM	chr2:159314501-159314807(+)$1	306	37	45	12.8541
CCCDDDDd	chr1:1208692-1208958(-)$1	266	44	52	18.8958
bccc22ff	chr8:71314076-71314346(-)$1	270	117	125	14.4166
4444hhhh	chr8:144566868-144567119(-)$1	251	229	237	13.2708
dddd####	chr16:89556787-89557033(-)$1	246	98	106	15.7708
CKKDDDDL	chr1:26232150-26232455(-)$1	305	51	59	15.7708
f::eeeee	chr3:33481597-33481848(-)$1	251	183	191	18.8958
GGG}EEEE	chr8:142441443-142441697(+)$1	254	230	238	15.7708
eeeaaeee	chr20:62330172-62330433(-)$1	261	115	123	18.8958
dddd[ccc	chr22:20109990-20110237(+)$1	247	182	190	16.8125
cc]fffff	chr1:2326204-2326449(+)$1	245	80	88	12.8541
e333iiii	chr16:67596184-67596450(-)$1	266	32	40	14.2083
ccc[ccc[	chr2:20549855-20550091(-)$1	236	5	13	14.4166
ccc####f	chr20:62330008-62330269(-)$1	261	39	47	15.0416
:::fffff	chr20:62330650-62330905(-)$1	255	203	211	13.2708
[bb"""gg	chr3:128211820-128212101(+)$1	281	10	18	13.0625
========	chr9:139560088-139560356(+)$1	268	164	172	14.1041
JJJJJJJJ	chr16:30959854-30960149(+)$1	295	194	202	18.8958
ddd[====	chr7:925104-925356(+)$1	252	124	132	14.5208
ZZZDDDD:	chr19:42788120-42788363(+)$1	243	204	212	15.9791
GGKKDDDD	chr19:42759090-42759332(-)$1	242	6	14	14.4166
2ffffff]	chr19:41770614-41770899(+)$1	285	238	246	15.7708
ggggeeee	chr1:36789531-36789831(+)$1	300	208	216	15.9791
ffffccco	chr19:1416417-1416678(+)$1	261	122	130	14.4166
maeeeeec	chr15:93426452-93426739(+)$1	287	178	186	18.8958
4ffffff]	chr5:133340035-133340325(-)$1	290	90	98	18.8958
odddd22c	chr20:62331052-62331312(-)$1	260	39	47	16.8125
deeeeeoo	chr7:2147098-2147358(-)$1	260	40	48	12.8541
A}EEEEEA	chr2:97535518-97535833(-)$1	315	258	266	18.8958
FFFFFF{B	chr20:62331121-62331354(-)$1	233	81	89	16.8125
oooooccc	chr1:202776311-202776604(-)$1	293	143	151	18.8958
eeee4444	chr7:924766-925021(+)$1	255	122	130	15.7708
CCC}HHHH	chr7:157130044-157130366(+)$1	322	93	101	15.7708
ccc22a]a	chr17:7477339-7477619(+)$1	280	250	258	14.5208
ddddllld	chr17:79878711-79878942(-)$1	231	201	209	14.5208
"""ggggg	chr20:62330411-62330645(-)$1	234	27	35	16.8125
IIIIIIee	chr16:4660789-4661039(-)$1	250	124	132	12.8541
d"""gggg	chr2:232574480-232574757(+)$1	277	166	174	15.7708
H{CCCfff	chr12:133337679-133337982(-)$1	303	18	26	16.8125
ZIIIIIII	chr19:1473815-1474058(-)$1	243	178	186	13.6875
gggg::::	chr19:1473748-1474015(-)$1	267	135	143	13.6875
ee[bbmmm	chr17:80871549-80871806(+)$1	257	137	145	14.5208
ffffff[b	chr3:128209211-128209433(+)$1	222	0	8	14.2083
fflllfff	chr21:44495750-44495990(-)$1	240	166	174	15.3541
eeee[ccc	chr1:36789969-36790219(+)$1	250	92	100	15.0416
ffff22bb	chr16:2580595-2580934(+)$1	339	100	108	15.7708

#DB
(((((.((	chr4:891781-892047(-)$1	1	8	16	16.8125
))..))))	chr1:228270388-228270677(+)$1	1	248	256	15.7708
((((((..	chr2:159314501-159314807(+)$1	1	37	45	12.8541
)))))))(	chr1:1208692-1208958(-)$1	1	44	52	18.8958
))))..))	chr8:71314076-71314346(-)$1	1	117	125	14.4166
....))))	chr8:144566868-144567119(-)$1	1	229	237	13.2708
((((....	chr16:89556787-89557033(-)$1	1	98	106	15.7708
(..((((.	chr1:26232150-26232455(-)$1	1	51	59	15.7708
)..(((((	chr3:33481597-33481848(-)$1	1	183	191	18.8958
))).))))	chr8:142441443-142441697(+)$1	1	230	238	15.7708
((((((((	chr20:62330172-62330433(-)$1	1	115	123	18.8958
((((.(((	chr22:20109990-20110237(+)$1	1	182	190	16.8125
)).)))))	chr1:2326204-2326449(+)$1	1	80	88	12.8541
)...))))	chr16:67596184-67596450(-)$1	1	32	40	14.2083
(((.(((.	chr2:20549855-20550091(-)$1	1	5	13	14.4166
(((....(	chr20:62330008-62330269(-)$1	1	39	47	15.0416
...(((((	chr20:62330650-62330905(-)$1	1	203	211	13.2708
.((...((	chr3:128211820-128212101(+)$1	1	10	18	13.0625
((((((((	chr9:139560088-139560356(+)$1	1	164	172	14.1041
))))))))	chr16:30959854-30960149(+)$1	1	194	202	18.8958
(((.((((	chr7:925104-925356(+)$1	1	124	132	14.5208
...)))).	chr19:42788120-42788363(+)$1	1	204	212	15.9791
((..((((	chr19:42759090-42759332(-)$1	1	6	14	14.4166
.)))))).	chr19:41770614-41770899(+)$1	1	238	246	15.7708
((((((((	chr1:36789531-36789831(+)$1	1	208	216	15.9791
(((((((.	chr19:1416417-1416678(+)$1	1	122	130	14.4166
.)))))))	chr15:93426452-93426739(+)$1	1	178	186	18.8958
.)))))).	chr5:133340035-133340325(-)$1	1	90	98	18.8958
.))))..)	chr20:62331052-62331312(-)$1	1	39	47	16.8125
((((((..	chr7:2147098-2147358(-)$1	1	40	48	12.8541
).))))))	chr2:97535518-97535833(-)$1	1	258	266	18.8958
((((((.(	chr20:62331121-62331354(-)$1	1	81	89	16.8125
.....)))	chr1:202776311-202776604(-)$1	1	143	151	18.8958
))))....	chr7:924766-925021(+)$1	1	122	130	15.7708
))).))))	chr7:157130044-157130366(+)$1	1	93	101	15.7708
)))..).)	chr17:7477339-7477619(+)$1	1	250	258	14.5208
((((...)	chr17:79878711-79878942(-)$1	1	201	209	14.5208
...(((((	chr20:62330411-62330645(-)$1	1	27	35	16.8125
((((((((	chr16:4660789-4661039(-)$1	1	124	132	12.8541
(...((((	chr2:232574480-232574757(+)$1	1	166	174	15.7708
(.((((((	chr12:133337679-133337982(-)$1	1	18	26	16.8125
.)))))))	chr19:1473815-1474058(-)$1	1	178	186	13.6875
))))....	chr19:1473748-1474015(-)$1	1	135	143	13.6875
((.((...	chr17:80871549-80871806(+)$1	1	137	145	14.5208
((((((.(	chr3:128209211-128209433(+)$1	1	0	8	14.2083
((...)))	chr21:44495750-44495990(-)$1	1	166	174	15.3541
((((.(((	chr1:36789969-36790219(+)$1	1	92	100	15.0416
))))..))	chr16:2580595-2580934(+)$1	1	100	108	15.7708

#PSSM
G : 0.81	g : 0.10	U : 0.04	C : 0.02	A : 0.02	
G : 0.89	g : 0.08	c : 0.02	
G : 0.89	g : 0.10	
C : 0.72	G : 0.08	g : 0.06	U : 0.06	c : 0.04	A : 0.02	
C : 0.81	c : 0.10	A : 0.04	U : 0.02	G : 0.02	
C : 0.85	c : 0.10	G : 0.02	U : 0.02	
C : 0.56	U : 0.22	c : 0.08	G : 0.06	A : 0.04	a : 0.02	
G : 0.68	A : 0.16	g : 0.10	U : 0.02	C : 0.02	

#score	748.041666666667
#seq	48
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_transcript_m1_run1.nuc.txt

#NT
ugg	chr19:10441093-10441332(-)$1	239	11	14	9.0000
UGG	chr16:698026-698270(+)$1	244	21	24	9.0000
UGG	chr1:244599937-244600186(-)$1	249	0	3	9.0000
UGG	chr2:203157535-203157780(+)$1	245	22	25	9.0000
UGG	chr4:2514254-2514466(+)$1	212	112	115	9.0000
UGG	chr15:91479250-91479498(+)$1	248	5	8	9.0000
UGG	chr11:63960658-63960921(+)$1	263	61	64	9.0000
UGG	chr1:54237826-54238101(-)$1	275	6	9	9.0000
UGG	chr7:150023006-150023242(+)$1	236	0	3	9.0000
UGG	chr7:45026002-45026222(-)$1	220	62	65	9.0000
UGG	chr14:90730395-90730715(+)$1	320	14	17	9.0000
UGG	chr3:141640803-141641023(+)$1	220	53	56	9.0000
UGG	chr1:975942-976167(+)$1	225	47	50	9.0000
UGG	chr17:45741556-45741785(+)$1	229	5	8	9.0000
UGG	chr14:102506651-102506872(+)$1	221	16	19	9.0000
UGG	chr15:89870438-89870701(-)$1	263	28	31	9.0000
UGG	chr5:10394212-10394444(+)$1	232	7	10	9.0000
UGG	chr17:45286848-45287063(+)$1	215	94	97	9.0000
UGG	chr2:86357669-86357898(+)$1	229	5	8	9.0000
UGG	chrX:152936678-152936949(-)$1	271	37	40	9.0000
UGG	chr19:11217308-11217536(+)$1	228	41	44	9.0000
UGG	chr3:39187817-39188060(-)$1	243	13	16	9.0000
UGG	chr3:52514210-52514486(+)$1	276	53	56	9.0000
UGG	chr2:26420373-26420659(-)$1	286	188	191	9.0000
UGG	chr17:2298004-2298262(-)$1	258	27	30	9.0000
UGG	chr19:10561517-10561760(+)$1	243	5	8	9.0000
UGG	chr12:117271645-117271865(+)$1	220	17	20	9.0000
UGG	chr5:176795166-176795391(+)$1	225	60	63	9.0000
UGG	chr1:32790076-32790297(+)$1	221	10	13	9.0000
UGG	chr5:68464071-68464351(+)$1	280	1	4	9.0000
UGG	chr4:1989448-1989696(-)$1	248	40	43	9.0000
UGG	chr15:72509607-72509835(-)$1	228	12	15	9.0000
UGG	chr11:213322-213619(+)$1	297	23	26	9.0000
UGG	chr17:17722155-17722383(-)$1	228	34	37	9.0000
UGG	chr1:19474492-19474743(-)$1	251	6	9	9.0000
UGG	chr19:2111129-2111434(-)$1	305	3	6	9.0000
UGG	chr6:41899001-41899244(+)$1	243	61	64	9.0000
UGG	chr7:100173166-100173425(-)$1	259	54	57	9.0000
UGG	chr6:24666608-24666859(-)$1	251	51	54	9.0000
UGG	chr22:38083940-38084193(+)$1	253	98	101	9.0000
UGG	chr22:30740778-30740995(-)$1	217	57	60	9.0000
UGG	chr16:4491276-4491530(+)$1	254	12	15	9.0000
UGG	chr7:150759071-150759310(+)$1	239	61	64	9.0000
UGG	chr1:150531842-150532085(+)$1	243	76	79	9.0000
UGG	chr20:43584883-43585115(-)$1	232	53	56	9.0000
UGG	chr7:73602028-73602243(+)$1	215	107	110	9.0000
UGG	chr16:30012278-30012509(+)$1	231	89	92	9.0000
UGG	chr3:172058770-172059044(+)$1	274	5	8	9.0000
UGG	chr16:30078627-30078865(+)$1	238	18	21	9.0000
UGG	chr5:1479472-1479762(-)$1	290	16	19	9.0000
UGG	chr16:20787297-20787534(+)$1	237	40	43	9.0000
UGG	chr19:35500245-35500491(+)$1	246	5	8	9.0000
UGG	chr8:145650882-145651142(-)$1	260	16	19	9.0000
UGG	chrX:64744206-64744454(-)$1	248	82	85	9.0000
UGG	chr12:122611808-122612017(+)$1	209	2	5	9.0000
UGG	chr17:79657232-79657487(+)$1	255	39	42	9.0000
UGG	chr9:130863574-130863788(+)$1	214	55	58	9.0000
ugg	chr20:49191102-49191337(+)$1	235	75	78	9.0000
ugg	chr1:153918593-153918809(-)$1	216	45	48	9.0000
UGG	chr4:174253847-174254060(-)$1	213	3	6	9.0000
UGG	chr19:33122137-33122421(-)$1	284	4	7	9.0000
UGG	chr11:46822606-46822846(-)$1	240	20	23	9.0000
UGG	chr7:150820755-150821023(+)$1	268	67	70	9.0000
UGG	chr22:35804490-35804699(+)$1	209	81	84	9.0000
UGG	chr12:132464247-132464484(+)$1	237	13	16	9.0000
UGG	chr17:80882833-80883039(+)$1	206	2	5	9.0000
UGG	chr17:40267600-40267814(-)$1	214	110	113	9.0000
UGG	chr20:37063711-37063928(-)$1	217	110	113	9.0000
UGG	chr3:38060379-38060600(-)$1	221	82	85	9.0000
UGG	chr6:170060528-170060809(-)$1	281	12	15	9.0000
UGG	chr1:22848064-22848321(+)$1	257	88	91	9.0000
UGG	chr10:3151578-3151798(+)$1	220	77	80	9.0000
UGG	chr20:49218430-49218655(-)$1	225	9	12	9.0000
UGG	chr22:42084635-42084852(-)$1	217	53	56	9.0000
UGG	chr6:31856391-31856653(-)$1	262	5	8	9.0000
Ugg	chr7:148484110-148484371(+)$1	261	161	164	9.0000
UGG	chr15:78832781-78833025(+)$1	244	32	35	9.0000
UGG	chr19:5218430-5218674(-)$1	244	2	5	9.0000
UGG	chr7:142964718-142964969(+)$1	251	5	8	9.0000
UGG	chr12:131356576-131356815(+)$1	239	89	92	9.0000
UGG	chr1:31409347-31409590(-)$1	243	42	45	9.0000
UGG	chr3:48229122-48229372(-)$1	250	27	30	9.0000
UGG	chr1:43300609-43300853(+)$1	244	9	12	9.0000
UGG	chr1:113235450-113235666(+)$1	216	12	15	9.0000
UGG	chr16:4748637-4748876(-)$1	239	11	14	9.0000
UGG	chr19:3382141-3382349(+)$1	208	44	47	9.0000
UGG	chr19:41111637-41111875(+)$1	238	55	58	9.0000
UGG	chr11:47504900-47505105(-)$1	205	54	57	9.0000
UGG	chr7:99042360-99042616(+)$1	256	170	173	9.0000
UGG	chr3:47890474-47890708(+)$1	234	1	4	9.0000
UGG	chr19:10602139-10602352(-)$1	213	27	30	9.0000
UGG	chr12:9096223-9096485(-)$1	262	31	34	9.0000
UGG	chr10:121335182-121335418(-)$1	236	12	15	9.0000
UGG	chr19:49700076-49700318(+)$1	242	18	21	9.0000
UGG	chr8:22034062-22034344(+)$1	282	21	24	9.0000
UGG	chr1:16954845-16955062(-)$1	217	36	39	9.0000
UGG	chr22:19443966-19444185(-)$1	219	48	51	9.0000
UGG	chr6:41903662-41903900(-)$1	238	13	16	9.0000
UGG	chr12:131357000-131357255(+)$1	255	8	11	9.0000

#otherMatches

#Struct PSSM
GG{	chr9:139102936-139103163(-)$1	227	11	14	9.0000
hnn	chr19:10441093-10441332(-)$1	239	11	14	9.0000
EE{	chr16:698026-698270(+)$1	244	21	24	9.0000
DDD	chr1:244599937-244600186(-)$1	249	0	3	9.0000
EEE	chr2:203157535-203157780(+)$1	245	22	25	9.0000
ddd	chr4:2514254-2514466(+)$1	212	112	115	9.0000
hhh	chr15:91479250-91479498(+)$1	248	5	8	9.0000
CCC	chr11:63960658-63960921(+)$1	263	61	64	9.0000
ggg	chr1:54237826-54238101(-)$1	275	6	9	9.0000
::c	chr7:150023006-150023242(+)$1	236	0	3	9.0000
hhh	chr7:45026002-45026222(-)$1	220	62	65	9.0000
bbn	chr14:90730395-90730715(+)$1	320	14	17	9.0000
MCC	chr3:141640803-141641023(+)$1	220	53	56	9.0000
ccc	chr1:975942-976167(+)$1	225	47	50	9.0000
{FF	chr17:45741556-45741785(+)$1	229	5	8	9.0000
CCD	chr14:102506651-102506872(+)$1	221	16	19	9.0000
bbe	chr15:89870438-89870701(-)$1	263	28	31	9.0000
:::	chr5:10394212-10394444(+)$1	232	7	10	9.0000
eee	chr17:45286848-45287063(+)$1	215	94	97	9.0000
{GG	chr2:86357669-86357898(+)$1	229	5	8	9.0000
odd	chrX:152936678-152936949(-)$1	271	37	40	9.0000
eee	chr19:11217308-11217536(+)$1	228	41	44	9.0000
DDD	chr3:39187817-39188060(-)$1	243	13	16	9.0000
DDC	chr3:52514210-52514486(+)$1	276	53	56	9.0000
BBY	chr2:26420373-26420659(-)$1	286	188	191	9.0000
b[c	chr17:2298004-2298262(-)$1	258	27	30	9.0000
B{E	chr19:10561517-10561760(+)$1	243	5	8	9.0000
]bb	chr12:117271645-117271865(+)$1	220	17	20	9.0000
""c	chr5:176795166-176795391(+)$1	225	60	63	9.0000
JJJ	chr1:32790076-32790297(+)$1	221	10	13	9.0000
:EE	chr5:68464071-68464351(+)$1	280	1	4	9.0000
ccc	chr4:1989448-1989696(-)$1	248	40	43	9.0000
JJJ	chr15:72509607-72509835(-)$1	228	12	15	9.0000
hhh	chr11:213322-213619(+)$1	297	23	26	9.0000
FF:	chr17:17722155-17722383(-)$1	228	34	37	9.0000
[bb	chr1:19474492-19474743(-)$1	251	6	9	9.0000
{GG	chr19:2111129-2111434(-)$1	305	3	6	9.0000
eee	chr6:41899001-41899244(+)$1	243	61	64	9.0000
ooo	chr7:100173166-100173425(-)$1	259	54	57	9.0000
DLL	chr6:24666608-24666859(-)$1	251	51	54	9.0000
"cc	chr22:38083940-38084193(+)$1	253	98	101	9.0000
d:a	chr22:30740778-30740995(-)$1	217	57	60	9.0000
eee	chr16:4491276-4491530(+)$1	254	12	15	9.0000
"ee	chr7:150759071-150759310(+)$1	239	61	64	9.0000
ccc	chr1:150531842-150532085(+)$1	243	76	79	9.0000
LLF	chr20:43584883-43585115(-)$1	232	53	56	9.0000
ee:	chr7:73602028-73602243(+)$1	215	107	110	9.0000
ddd	chr16:30012278-30012509(+)$1	231	89	92	9.0000
GGG	chr3:172058770-172059044(+)$1	274	5	8	9.0000
a!!	chr16:30078627-30078865(+)$1	238	18	21	9.0000
EEE	chr5:1479472-1479762(-)$1	290	16	19	9.0000
DKK	chr16:20787297-20787534(+)$1	237	40	43	9.0000
EEE	chr19:35500245-35500491(+)$1	246	5	8	9.0000
mme	chr8:145650882-145651142(-)$1	260	16	19	9.0000
fff	chrX:64744206-64744454(-)$1	248	82	85	9.0000
DDb	chr12:122611808-122612017(+)$1	209	2	5	9.0000
===	chr17:79657232-79657487(+)$1	255	39	42	9.0000
ggg	chr9:130863574-130863788(+)$1	214	55	58	9.0000
dds	chr20:49191102-49191337(+)$1	235	75	78	9.0000
cc2	chr1:153918593-153918809(-)$1	216	45	48	9.0000
GGG	chr4:174253847-174254060(-)$1	213	3	6	9.0000
:::	chr19:33122137-33122421(-)$1	284	4	7	9.0000
ggg	chr11:46822606-46822846(-)$1	240	20	23	9.0000
mdd	chr7:150820755-150821023(+)$1	268	67	70	9.0000
ff!	chr22:35804490-35804699(+)$1	209	81	84	9.0000
ddm	chr12:132464247-132464484(+)$1	237	13	16	9.0000
::E	chr17:80882833-80883039(+)$1	206	2	5	9.0000
:bb	chr17:40267600-40267814(-)$1	214	110	113	9.0000
c22	chr20:37063711-37063928(-)$1	217	110	113	9.0000
cc:	chr3:38060379-38060600(-)$1	221	82	85	9.0000
b[c	chr6:170060528-170060809(-)$1	281	12	15	9.0000
eee	chr1:22848064-22848321(+)$1	257	88	91	9.0000
rrr	chr10:3151578-3151798(+)$1	220	77	80	9.0000
FFF	chr20:49218430-49218655(-)$1	225	9	12	9.0000
###	chr22:42084635-42084852(-)$1	217	53	56	9.0000
EEd	chr6:31856391-31856653(-)$1	262	5	8	9.0000
ppp	chr7:148484110-148484371(+)$1	261	161	164	9.0000
C{B	chr15:78832781-78833025(+)$1	244	32	35	9.0000
CCC	chr19:5218430-5218674(-)$1	244	2	5	9.0000
GGG	chr7:142964718-142964969(+)$1	251	5	8	9.0000
mmm	chr12:131356576-131356815(+)$1	239	89	92	9.0000
fff	chr1:31409347-31409590(-)$1	243	42	45	9.0000
mgg	chr3:48229122-48229372(-)$1	250	27	30	9.0000
{EE	chr1:43300609-43300853(+)$1	244	9	12	9.0000
ddd	chr1:113235450-113235666(+)$1	216	12	15	9.0000
dd[	chr16:4748637-4748876(-)$1	239	11	14	9.0000
ddd	chr19:3382141-3382349(+)$1	208	44	47	9.0000
DDD	chr19:41111637-41111875(+)$1	238	55	58	9.0000
eee	chr11:47504900-47505105(-)$1	205	54	57	9.0000
dd3	chr7:99042360-99042616(+)$1	256	170	173	9.0000
ggg	chr3:47890474-47890708(+)$1	234	1	4	9.0000
fgg	chr19:10602139-10602352(-)$1	213	27	30	9.0000
CCC	chr12:9096223-9096485(-)$1	262	31	34	9.0000
ccc	chr10:121335182-121335418(-)$1	236	12	15	9.0000
mbb	chr19:49700076-49700318(+)$1	242	18	21	9.0000
:ee	chr8:22034062-22034344(+)$1	282	21	24	9.0000
fff	chr1:16954845-16955062(-)$1	217	36	39	9.0000
bdd	chr22:19443966-19444185(-)$1	219	48	51	9.0000
FFF	chr6:41903662-41903900(-)$1	238	13	16	9.0000
E{A	chr12:131357000-131357255(+)$1	255	8	11	9.0000

#DB
((.	chr9:139102936-139103163(-)$1	1	11	14	9.0000
(..	chr19:10441093-10441332(-)$1	1	11	14	9.0000
((.	chr16:698026-698270(+)$1	1	21	24	9.0000
(((	chr1:244599937-244600186(-)$1	1	0	3	9.0000
(((	chr2:203157535-203157780(+)$1	1	22	25	9.0000
)))	chr4:2514254-2514466(+)$1	1	112	115	9.0000
(((	chr15:91479250-91479498(+)$1	1	5	8	9.0000
(((	chr11:63960658-63960921(+)$1	1	61	64	9.0000
(((	chr1:54237826-54238101(-)$1	1	6	9	9.0000
..(	chr7:150023006-150023242(+)$1	1	0	3	9.0000
(((	chr7:45026002-45026222(-)$1	1	62	65	9.0000
((.	chr14:90730395-90730715(+)$1	1	14	17	9.0000
.((	chr3:141640803-141641023(+)$1	1	53	56	9.0000
(((	chr1:975942-976167(+)$1	1	47	50	9.0000
.((	chr17:45741556-45741785(+)$1	1	5	8	9.0000
(((	chr14:102506651-102506872(+)$1	1	16	19	9.0000
(((	chr15:89870438-89870701(-)$1	1	28	31	9.0000
...	chr5:10394212-10394444(+)$1	1	7	10	9.0000
)))	chr17:45286848-45287063(+)$1	1	94	97	9.0000
.((	chr2:86357669-86357898(+)$1	1	5	8	9.0000
.))	chrX:152936678-152936949(-)$1	1	37	40	9.0000
(((	chr19:11217308-11217536(+)$1	1	41	44	9.0000
(((	chr3:39187817-39188060(-)$1	1	13	16	9.0000
(((	chr3:52514210-52514486(+)$1	1	53	56	9.0000
)).	chr2:26420373-26420659(-)$1	1	188	191	9.0000
(.(	chr17:2298004-2298262(-)$1	1	27	30	9.0000
(.(	chr19:10561517-10561760(+)$1	1	5	8	9.0000
.))	chr12:117271645-117271865(+)$1	1	17	20	9.0000
..(	chr5:176795166-176795391(+)$1	1	60	63	9.0000
(((	chr1:32790076-32790297(+)$1	1	10	13	9.0000
.((	chr5:68464071-68464351(+)$1	1	1	4	9.0000
(((	chr4:1989448-1989696(-)$1	1	40	43	9.0000
(((	chr15:72509607-72509835(-)$1	1	12	15	9.0000
(((	chr11:213322-213619(+)$1	1	23	26	9.0000
((.	chr17:17722155-17722383(-)$1	1	34	37	9.0000
.((	chr1:19474492-19474743(-)$1	1	6	9	9.0000
.((	chr19:2111129-2111434(-)$1	1	3	6	9.0000
)))	chr6:41899001-41899244(+)$1	1	61	64	9.0000
...	chr7:100173166-100173425(-)$1	1	54	57	9.0000
(..	chr6:24666608-24666859(-)$1	1	51	54	9.0000
.((	chr22:38083940-38084193(+)$1	1	98	101	9.0000
).(	chr22:30740778-30740995(-)$1	1	57	60	9.0000
(((	chr16:4491276-4491530(+)$1	1	12	15	9.0000
.((	chr7:150759071-150759310(+)$1	1	61	64	9.0000
(((	chr1:150531842-150532085(+)$1	1	76	79	9.0000
..(	chr20:43584883-43585115(-)$1	1	53	56	9.0000
)).	chr7:73602028-73602243(+)$1	1	107	110	9.0000
)))	chr16:30012278-30012509(+)$1	1	89	92	9.0000
(((	chr3:172058770-172059044(+)$1	1	5	8	9.0000
(..	chr16:30078627-30078865(+)$1	1	18	21	9.0000
(((	chr5:1479472-1479762(-)$1	1	16	19	9.0000
(..	chr16:20787297-20787534(+)$1	1	40	43	9.0000
(((	chr19:35500245-35500491(+)$1	1	5	8	9.0000
..)	chr8:145650882-145651142(-)$1	1	16	19	9.0000
)))	chrX:64744206-64744454(-)$1	1	82	85	9.0000
(((	chr12:122611808-122612017(+)$1	1	2	5	9.0000
)))	chr17:79657232-79657487(+)$1	1	39	42	9.0000
(((	chr9:130863574-130863788(+)$1	1	55	58	9.0000
((.	chr20:49191102-49191337(+)$1	1	75	78	9.0000
)).	chr1:153918593-153918809(-)$1	1	45	48	9.0000
(((	chr4:174253847-174254060(-)$1	1	3	6	9.0000
...	chr19:33122137-33122421(-)$1	1	4	7	9.0000
)))	chr11:46822606-46822846(-)$1	1	20	23	9.0000
.))	chr7:150820755-150821023(+)$1	1	67	70	9.0000
((.	chr22:35804490-35804699(+)$1	1	81	84	9.0000
((.	chr12:132464247-132464484(+)$1	1	13	16	9.0000
..(	chr17:80882833-80883039(+)$1	1	2	5	9.0000
.((	chr17:40267600-40267814(-)$1	1	110	113	9.0000
)..	chr20:37063711-37063928(-)$1	1	110	113	9.0000
)).	chr3:38060379-38060600(-)$1	1	82	85	9.0000
(.(	chr6:170060528-170060809(-)$1	1	12	15	9.0000
)))	chr1:22848064-22848321(+)$1	1	88	91	9.0000
...	chr10:3151578-3151798(+)$1	1	77	80	9.0000
(((	chr20:49218430-49218655(-)$1	1	9	12	9.0000
...	chr22:42084635-42084852(-)$1	1	53	56	9.0000
(((	chr6:31856391-31856653(-)$1	1	5	8	9.0000
...	chr7:148484110-148484371(+)$1	1	161	164	9.0000
(.(	chr15:78832781-78833025(+)$1	1	32	35	9.0000
(((	chr19:5218430-5218674(-)$1	1	2	5	9.0000
(((	chr7:142964718-142964969(+)$1	1	5	8	9.0000
...	chr12:131356576-131356815(+)$1	1	89	92	9.0000
)))	chr1:31409347-31409590(-)$1	1	42	45	9.0000
.))	chr3:48229122-48229372(-)$1	1	27	30	9.0000
.((	chr1:43300609-43300853(+)$1	1	9	12	9.0000
(((	chr1:113235450-113235666(+)$1	1	12	15	9.0000
((.	chr16:4748637-4748876(-)$1	1	11	14	9.0000
)))	chr19:3382141-3382349(+)$1	1	44	47	9.0000
(((	chr19:41111637-41111875(+)$1	1	55	58	9.0000
(((	chr11:47504900-47505105(-)$1	1	54	57	9.0000
)).	chr7:99042360-99042616(+)$1	1	170	173	9.0000
(((	chr3:47890474-47890708(+)$1	1	1	4	9.0000
)((	chr19:10602139-10602352(-)$1	1	27	30	9.0000
(((	chr12:9096223-9096485(-)$1	1	31	34	9.0000
(((	chr10:121335182-121335418(-)$1	1	12	15	9.0000
.))	chr19:49700076-49700318(+)$1	1	18	21	9.0000
.((	chr8:22034062-22034344(+)$1	1	21	24	9.0000
(((	chr1:16954845-16955062(-)$1	1	36	39	9.0000
)))	chr22:19443966-19444185(-)$1	1	48	51	9.0000
(((	chr6:41903662-41903900(-)$1	1	13	16	9.0000
(.(	chr12:131357000-131357255(+)$1	1	8	11	9.0000

#PSSM
U : 0.97	u : 0.03	
G : 0.96	g : 0.04	
G : 0.96	g : 0.04	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_UTR_m1_run1.nuc.txt

#NT
CUGCGUUU	chr12:77158269-77158555(+)$1	286	115	123	15.2820
CUGUGUGU	chr5:158634782-158635048(-)$1	266	31	39	15.6666
UUGUGUUU	chr1:1689858-1690096(-)$1	238	53	61	16.3076
CUGUGUUU	chr18:74071955-74072293(-)$1	338	23	31	19.7692
auguguuu	chr21:38454671-38454923(+)$1	252	11	19	16.4358
GUGUGUUU	chr12:70637739-70638047(+)$1	308	87	95	16.1794
CUGUAUUU	chr12:69236332-69236543(-)$1	211	164	172	15.9230
UUGUGUUU	chr10:82219157-82219446(+)$1	289	134	142	16.3076
CUGUUUUU	chr13:99103991-99104254(-)$1	263	152	160	16.0512
AUGUGUUU	chr20:23356832-23357157(-)$1	325	223	231	16.4358
CUGUGUUU	chr5:138630505-138630770(+)$1	265	216	224	19.7692
cuguuuuu	chr7:149185782-149186047(-)$1	265	95	103	16.0512
CUGUGUUU	chr17:80816434-80816663(+)$1	229	118	126	19.7692
GUGUGUUU	chr19:54971372-54971601(+)$1	229	84	92	16.1794
CUGUGUUG	chr18:56065037-56065264(+)$1	227	18	26	15.4102
CUGUGUUU	chr15:64793418-64793688(+)$1	270	254	262	19.7692
UUGUGUUU	chr2:181846026-181846306(+)$1	280	205	213	16.3076
CUGUGGUU	chr19:49605765-49605995(+)$1	230	135	143	15.5384
CUGUGGUU	chr3:187454153-187454431(-)$1	278	110	118	15.5384
CUGUGUUC	chr3:5259880-5260129(+)$1	249	235	243	15.2820
CUGAGUUU	chr17:20905339-20905651(-)$1	312	25	33	15.2820
CUGUGUCU	chr12:121160021-121160280(+)$1	259	129	137	15.9230
CUGUGUUG	chr21:46686883-46687146(-)$1	263	8	16	15.4102
CUGUUUUU	chr6:131321685-131321972(-)$1	287	262	270	16.0512
CUGUGUCU	chr17:79878966-79879226(-)$1	260	182	190	15.9230
CUGUCUUU	chr11:111610074-111610317(-)$1	243	93	101	15.9230
CUGUGUAU	chr20:23357712-23358019(-)$1	307	124	132	15.7948
cugugguu	chr4:1386310-1386543(+)$1	233	93	101	15.5384
CUGUCUUU	chr1:21501048-21501311(-)$1	263	196	204	15.9230
CGGUGUUU	chr16:23478677-23478897(-)$1	220	59	67	15.0256
CUGUAUUU	chr12:69236320-69236522(-)$1	202	143	151	15.9230
CUGGGUUU	chr2:61763364-61763667(-)$1	303	25	33	15.2820
CUGUGUCU	chr12:121159961-121160221(+)$1	260	189	197	15.9230
AUGUGUUU	chr19:16038557-16038814(-)$1	257	104	112	16.4358
AUGUGUUU	chr4:183812101-183812390(-)$1	289	15	23	16.4358
CUGUGUUU	chr2:240898537-240898828(-)$1	291	206	214	19.7692
CUGUGUAU	chr17:45912170-45912394(+)$1	224	213	221	15.7948
CUCUGUUU	chr2:149402891-149403141(+)$1	250	159	167	15.0256

#otherMatches

#Struct PSSM
^^^^^^^^	chr17:80816333-80816607(+)$1	274	219	227	19.7692
DDDDeeee	chr12:77158269-77158555(+)$1	286	115	123	15.2820
gnnnnngg	chr5:158634782-158635048(-)$1	266	31	39	15.6666
pppppppc	chr1:1689858-1690096(-)$1	238	53	61	16.3076
HHHHHH::	chr18:74071955-74072293(-)$1	338	23	31	19.7692
ssssssss	chr21:38454671-38454923(+)$1	252	11	19	16.4358
ii!!dddd	chr12:70637739-70638047(+)$1	308	87	95	16.1794
'''''eee	chr12:69236332-69236543(-)$1	211	164	172	15.9230
:::::::G	chr10:82219157-82219446(+)$1	289	134	142	16.3076
fff55555	chr13:99103991-99104254(-)$1	263	152	160	16.0512
::::::ff	chr20:23356832-23357157(-)$1	325	223	231	16.4358
d"""gggg	chr5:138630505-138630770(+)$1	265	216	224	19.7692
eee%%%%%	chr7:149185782-149186047(-)$1	265	95	103	16.0512
iiiiiii:	chr17:80816434-80816663(+)$1	229	118	126	19.7692
ff"""ddd	chr19:54971372-54971601(+)$1	229	84	92	16.1794
ddd!!ggg	chr18:56065037-56065264(+)$1	227	18	26	15.4102
hhhmmmmh	chr15:64793418-64793688(+)$1	270	254	262	19.7692
eddddttt	chr2:181846026-181846306(+)$1	280	205	213	16.3076
ppppbb22	chr19:49605765-49605995(+)$1	230	135	143	15.5384
:eeeeeff	chr3:187454153-187454431(-)$1	278	110	118	15.5384
ddddgggg	chr3:5259880-5260129(+)$1	249	235	243	15.2820
hhhhhhhh	chr17:20905339-20905651(-)$1	312	25	33	15.2820
C}CCC}CC	chr12:121160021-121160280(+)$1	259	129	137	15.9230
ddrrrrrr	chr21:46686883-46687146(-)$1	263	8	16	15.4102
uuuuuuue	chr6:131321685-131321972(-)$1	287	262	270	16.0512
mmccc]ii	chr17:79878966-79879226(-)$1	260	182	190	15.9230
hh::::::	chr11:111610074-111610317(-)$1	243	93	101	15.9230
!!bb[bbn	chr20:23357712-23358019(-)$1	307	124	132	15.7948
=====fff	chr4:1386310-1386543(+)$1	233	93	101	15.5384
B}FFFFFF	chr1:21501048-21501311(-)$1	263	196	204	15.9230
dddd]a33	chr16:23478677-23478897(-)$1	220	59	67	15.0256
'''''eee	chr12:69236320-69236522(-)$1	202	143	151	15.9230
qccc]a]h	chr2:61763364-61763667(-)$1	303	25	33	15.2820
DD}A}FFF	chr12:121159961-121160221(+)$1	260	189	197	15.9230
iiiiiiii	chr19:16038557-16038814(-)$1	257	104	112	16.4358
fffff:::	chr4:183812101-183812390(-)$1	289	15	23	16.4358
ggggggg]	chr2:240898537-240898828(-)$1	291	206	214	19.7692
2bb]ffff	chr17:45912170-45912394(+)$1	224	213	221	15.7948
qqqqqqqq	chr2:149402891-149403141(+)$1	250	159	167	15.0256

#DB
........	chr17:80816333-80816607(+)$1	1	219	227	19.7692
))))((((	chr12:77158269-77158555(+)$1	1	115	123	15.2820
(.....))	chr5:158634782-158635048(-)$1	1	31	39	15.6666
.......)	chr1:1689858-1690096(-)$1	1	53	61	16.3076
((((((..	chr18:74071955-74072293(-)$1	1	23	31	19.7692
........	chr21:38454671-38454923(+)$1	1	11	19	16.4358
((..((((	chr12:70637739-70638047(+)$1	1	87	95	16.1794
.....(((	chr12:69236332-69236543(-)$1	1	164	172	15.9230
.......)	chr10:82219157-82219446(+)$1	1	134	142	16.3076
))).....	chr13:99103991-99104254(-)$1	1	152	160	16.0512
......((	chr20:23356832-23357157(-)$1	1	223	231	16.4358
(...((((	chr5:138630505-138630770(+)$1	1	216	224	19.7692
(((.....	chr7:149185782-149186047(-)$1	1	95	103	16.0512
))))))).	chr17:80816434-80816663(+)$1	1	118	126	19.7692
((...(((	chr19:54971372-54971601(+)$1	1	84	92	16.1794
(((..(((	chr18:56065037-56065264(+)$1	1	18	26	15.4102
(((....)	chr15:64793418-64793688(+)$1	1	254	262	19.7692
(((((...	chr2:181846026-181846306(+)$1	1	205	213	16.3076
....))..	chr19:49605765-49605995(+)$1	1	135	143	15.5384
.(((((((	chr3:187454153-187454431(-)$1	1	110	118	15.5384
))))))))	chr3:5259880-5260129(+)$1	1	235	243	15.2820
((((((((	chr17:20905339-20905651(-)$1	1	25	33	15.2820
).))).))	chr12:121160021-121160280(+)$1	1	129	137	15.9230
((......	chr21:46686883-46687146(-)$1	1	8	16	15.4102
.......)	chr6:131321685-131321972(-)$1	1	262	270	16.0512
..))).))	chr17:79878966-79879226(-)$1	1	182	190	15.9230
))......	chr11:111610074-111610317(-)$1	1	93	101	15.9230
..((.((.	chr20:23357712-23358019(-)$1	1	124	132	15.7948
)))))(((	chr4:1386310-1386543(+)$1	1	93	101	15.5384
).))))))	chr1:21501048-21501311(-)$1	1	196	204	15.9230
)))).)..	chr16:23478677-23478897(-)$1	1	59	67	15.0256
.....(((	chr12:69236320-69236522(-)$1	1	143	151	15.9230
.))).).)	chr2:61763364-61763667(-)$1	1	25	33	15.2820
)).).)))	chr12:121159961-121160221(+)$1	1	189	197	15.9230
))))))))	chr19:16038557-16038814(-)$1	1	104	112	16.4358
)))))...	chr4:183812101-183812390(-)$1	1	15	23	16.4358
))))))).	chr2:240898537-240898828(-)$1	1	206	214	19.7692
.)).))))	chr17:45912170-45912394(+)$1	1	213	221	15.7948
........	chr2:149402891-149403141(+)$1	1	159	167	15.0256

#PSSM
C : 0.71	U : 0.07	A : 0.07	G : 0.05	c : 0.05	a : 0.02	
U : 0.89	u : 0.07	G : 0.02	
G : 0.89	g : 0.07	C : 0.02	
U : 0.84	u : 0.07	C : 0.02	A : 0.02	G : 0.02	
G : 0.76	g : 0.05	A : 0.05	U : 0.05	C : 0.05	u : 0.02	
U : 0.87	u : 0.05	G : 0.05	g : 0.02	
U : 0.76	u : 0.07	C : 0.07	A : 0.05	G : 0.02	
U : 0.84	u : 0.07	G : 0.05	C : 0.02	

#score	641.1282051282054
#seq	39
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_CDS_m1_run2.nuc.txt

#NT
ggguggaggccgggauugggacggaugggggcggggcauaggaggg	chr9:140500029-140500286(+)$1	257	14	60	21.4615
uggcggcggcggcggcggcggcagcagcagcgggggcugcggGCGG	chr14:23790622-23790853(+)$1	231	57	103	41.5576
UUGGGGCGUGGGGGGCGGCGGCGGUGGGGCGGACAGCCGGGGUGCG	chr11:63933076-63933362(-)$1	286	77	123	27.7115
Aggcggcggccgcggcugcugaggcggaggcugaggcaguggcgau	chr4:15656761-15657077(-)$1	316	123	169	24.6346
gggcggcggggacagcggcggggacagcggcgggcggcugggacgg	chr16:68002301-68002619(-)$1	318	90	136	34.0576
UggcggcguggggggcgggcccgggccgggccggggcggggAAGGA	chr1:19811827-19812127(-)$1	300	4	50	32.6153
gggcggggucgccugggggcggggccugggguggggccugcggacc	chr15:64443828-64444143(+)$1	315	4	50	25.3076
GGGAGGCGCAGGCGGCAGCUGGGGUUGCGGCCCGAAGCCgcggggg	chr3:101231834-101232161(-)$1	327	280	326	25.5961
UGGAGGCGGCGGCGGCGGCGAGGGAGCGAGCCUCGAGCGGGCGGGC	chr9:126692065-126692384(-)$1	319	32	78	32.1346
GGGCUGCGUCGGCUGCGGCGGGUGUGGGAGGUGGCGACGGCCGGGG	chr20:62694475-62694770(+)$1	295	81	127	38.1923
gggccgggccgccgggagucgcgggccuaggccgggcugggcgggc	chr8:21946595-21946916(+)$1	321	231	277	27.0384
GGCCGACCGGGAAGGCGGCUGCGCUGCUgggcgggggcgggagcug	chr5:178977461-178977822(+)$1	361	111	157	24.5384
GGGCCGGGGCGGCGGCGUCUGUggccguggccggggccggggccgu	chr18:51750681-51750976(-)$1	295	247	293	34.3461
GGGCGGCCGCGCCGGCUCCAGGUGCGGCGCGGGGCACACGGGAGGC	chr16:1728199-1728461(+)$1	262	137	183	24.7307
ggcgggcagcugcggcggcgccgcggcgggcgcagggcggccggAG	chr16:89894836-89895181(+)$1	345	130	176	25.2115
gcggccccgccucccaggcguggggcggggcgggcgccggggcggg	chr12:122150596-122150919(+)$1	323	4	50	20.9807
GUGCGGGCggugggacggggcagggccgggguggggcggggagggg	chr16:88923103-88923455(-)$1	352	294	340	29.2499
gggcggcggggcggggcguggccggcguggcggcgcUGGAGCCGGG	chr19:18632630-18632970(-)$1	340	29	75	26.7499
GGGAGGGGGCGGCUGUUGAGGGCGGCGGAGUAGGGGGCGAGCGAAG	chr2:208576456-208576737(+)$1	281	89	135	25.6923
gggcggcccggggggcaggggcagcuggcggaggcggcgccggagg	chr20:442882-443149(-)$1	267	208	254	28.0961
gggcggcggcgcgagcggcggcggcggcggUUCCAGCAUGAAGAGG	chr14:69619555-69619867(-)$1	312	135	181	28.6730
gggcggcgauggcggcggcggaggccgguggcgacgacgCCCGCUG	chr16:2264605-2264887(-)$1	282	101	147	32.8076
GGUCUGCUGGGAGUGGGGAGUccgcggggggcggcggcgggcgAGC	chr6:88182593-88182905(+)$1	312	154	200	25.1153
CGgcugcugccgcugccgcugcugcugcugcGGGGGUCGGGCGGCG	chr18:21017713-21018024(-)$1	311	108	154	25.4038
GGGCGCUGACGGCGGCGGUGGCGCUGCGGUGGCGGCGCGGUCGGAC	chr10:126480181-126480440(-)$1	259	46	92	22.7115
AGCUCGCGGAGGCGUGGCCGGUgcgcggggcccgcggcgcgcgggg	chr5:145214688-145215011(-)$1	323	151	197	21.7499
GAGCUGCUGGGUAGGUGGGCGCGGCAGGCCGCGGGAGUGGGCGGCG	chr16:89882878-89883153(-)$1	275	199	245	23.5769
cggcgccggcgccggcggccgAGGAGGCGGCAGGAACCGCAGGGCG	chr2:27255802-27256119(+)$1	317	146	192	30.9807
gggcgcaggcgcaggcgcgggcgggcggggcgcggggcgcggggcg	chr17:76778176-76778471(-)$1	295	20	66	34.8269
GGCGGGCGGAGCCGGAAGGGGUGGGUGGGGGCGGGGCCCAUCUUGC	chr17:79875814-79876126(-)$1	312	8	54	24.3461
GUgcgcccgcggcggugggcgggcggcggggccgugccgggcgggg	chr4:2263568-2263930(-)$1	362	306	352	33.2884
ggguggcugggccggcggcggcggcggUACGAGGCGCGCGCUCGGG	chr1:6845467-6845736(+)$1	269	53	99	31.3653
ggggcgggggaggugccgcggggggcgggcgcggcgcgcggggAGG	chr5:39074328-39074598(-)$1	270	14	60	26.6538
GAGAGGCUGCGCCGGCGGCGGAUCGCGCAGAGGGCGGUGGCCUGGG	chr8:144922851-144923233(-)$1	382	170	216	28.0961
UCGGGCCGGCCCGGGCGGAGGCUGGCGGGUUGGaggcaggacggag	chr12:107168311-107168688(+)$1	377	50	96	20.8846
GGGCGGCGCGGAGGAAGGAgccggcggcgcggggggcagcgcgggc	chr19:5719784-5720053(-)$1	269	170	216	31.6538
GGGCCCCAGGGCCGGGAGCGUUGGGCGGCAGGGCCGGGGCGCGGGG	chr2:179315596-179315894(-)$1	298	221	267	22.7115
gggcgggacggagggcgggacggggcgcgggcggggcggggcgggg	chr10:15210447-15210782(-)$1	335	17	63	36.4615
GGGCGGGGAUGGAGGCGGCCGUGGCGCCGGGGAGGGAUGCGCCGGC	chr2:238969566-238969881(+)$1	315	121	167	28.0961
CGGAGUCGGGGAGUGGGGCGGGGGAGCGAGGUGGCGCCGGGGAGCC	chr1:213031661-213031926(+)$1	265	81	127	25.3076
gugcggugguggcugcggcggcggcggcggGAGCAGCAUGGAUUGG	chr19:6739618-6739897(+)$1	279	117	163	28.9615
gcggggcggaacagaacugggcgcgcgggggcggggccgggcgcgc	chr9:139137528-139137758(-)$1	230	4	50	23.5769
GAGCUACGGCGCCGCCGGCGGGAGCGGGAGGCAGGUGUGGGCGGCC	chr5:140018940-140019325(+)$1	385	223	269	27.7115
cgguggcggcggcgacggcugcagaaggagaagggagccccccggc	chr4:74124235-74124487(-)$1	252	121	167	21.7499
UggcggcggcggcggcggcggcUGGUGCUGCAGGGUCGGCAGCUCC	chr1:1334497-1334805(-)$1	308	120	166	26.9423
GUGAGGCGGAGGCGCGGGCGGAGGAGGGAGGCCGGAGCGGGCAGCG	chr16:4664676-4664984(-)$1	308	130	176	31.6538
CGGCGGCGUCCCCAGAGGCGCGUGGGGCGGGCGGGGCUGGGUUGGG	chr15:42867758-42868016(+)$1	258	32	78	31.1730
GggcggcggcgacggcggcggcggUCGGGGGAGGGGCCGGGCGGGG	chr6:43596717-43596982(-)$1	265	19	65	58.0961
ACGCGGAGGAGGCGGAGCCCggagaggggugggggccggggagggu	chr2:54197699-54198040(-)$1	341	36	82	23.2884
GUGCUGCGGGGCAGGAGGAGCCGCGCGGGGAGGUGGCUGGGAGGGA	chr17:79213048-79213326(+)$1	278	221	267	26.9423
GAGGGGGCGCGUGUCCGGCGCGUGCAcggggcgggguggggggggg	chr19:18794391-18794731(+)$1	340	293	339	25.2115

#otherMatches

#Struct PSSM
[ccc[bbmmmmbb]ccc]ccc::::DDDD{BBKKCCCKKBBIIIII	chr13:115000388-115000694(+)$1	306	60	106	34.5384
{EEEEEKKCCCNNNNNDDDD{BB{CCC{A{DDDDKKA::::BB{A{	chr9:140500029-140500286(+)$1	257	14	60	21.4615
ccc]abb]ccc]dddd]ccc]a:bbmmmmbb::EEEEE{CCCMMMM	chr14:23790622-23790853(+)$1	231	57	103	41.5576
gggggg22a]a]a]hhhhhhhhbb[ccc[bb!!iiiiiiiii[bb[	chr11:63933076-63933362(-)$1	286	77	123	27.7115
ggg!!bb[a[ccc[ffffff!!cccmmmmccc22ffffff]ccc]a	chr4:15656761-15657077(-)$1	316	123	169	24.6346
"""dddd[a$$$$$bb[bbpppppppbb]bb333a]dddd666666	chr16:68002301-68002619(-)$1	318	90	136	34.0576
::::::A{HHHHHHHHKKEEEEEKKJJJJJJJJJJJKKCCC:::::	chr1:19811827-19812127(-)$1	300	4	50	32.6153
FF{A{DDDDKKFFFFFFccc####===========!!ccc[eeeee	chr15:64443828-64444143(+)$1	315	4	50	25.3076
dddccc:GGGGGGGABB}BB}CCC::eeeeennnnneeeeeEEEEE	chr3:101231834-101232161(-)$1	327	280	326	25.5961
DDDKKBB::bb[a[bb!!eeeeepppppppeeeee]bb]a]bb:ee	chr9:126692065-126692384(-)$1	319	32	78	32.1346
dddd[bb[ffffff[dddd[a!!bb[ammmma]bb22a]dddd]ff	chr20:62694475-62694770(+)$1	295	81	127	38.1923
[ddddeeeee!!bbnnnnnbb22eeeee]dddd]dddd22bb]ccc	chr8:21946595-21946916(+)$1	321	231	277	27.0384
eeeedddd]bb22eeeee]bb]bb]bb]ccc]iiiiiiiii:ccc[	chr5:178977461-178977822(+)$1	361	111	157	24.5384
g[ddddllldddd22ggggggg22dddd]ccc22eeeee]ffffff	chr18:51750681-51750976(-)$1	295	247	293	34.3461
bbccc[dddd[ccc[dddd[addddqqqqqqqqdddd]a]dddd]c	chr16:1728199-1728461(+)$1	262	137	183	24.7307
EEEEE{A:ccc[dddd[bb[a[cccnnnnnccc]a]bb]dddd]cc	chr16:89894836-89895181(+)$1	345	130	176	25.2115
BB:==========qqqqqqqq==========a[bbhhhhhhhh[a[	chr12:122150596-122150919(+)$1	323	4	50	20.9807
hhh]eeeeeEEEEE}EEEEEEEEEECCC}BB}HHHHHHHHZZZCCC	chr16:88923103-88923455(-)$1	352	294	340	29.2499
[ccc[cccqqqqqqqqccc]ccc]bb]dddd]ffffffEEEEE{CC	chr19:18632630-18632970(-)$1	340	29	75	26.7499
ppbb]bb]gggggggCCC{DDDDDDDDNNNNNGGGGGGG{DDDDCC	chr2:208576456-208576737(+)$1	281	89	135	25.6923
3dddd]eeeee22ccc:EEEEEYYEEEEEBB}EEEEE}CCCDDDDF	chr20:442882-443149(-)$1	267	208	254	28.0961
D~~~~DDDDCCCZZZHHHHHHHHZZZDDDDDDDD::::BB{EEEEE	chr14:69619555-69619867(-)$1	312	135	181	28.6730
b[ddddccchhhhhhhhccc!!===========[a"""ggggggg!	chr16:2264605-2264887(-)$1	282	101	147	32.8076
ggggggggBBYYGGGGGGGddddbb[iiiiiiiii!!bb[ffffff	chr6:88182593-88182905(+)$1	312	154	200	25.1153
iiiiiii:iiiiiiiiiccc[ddddmmmmdddd]ccc22iiiiiii	chr18:21017713-21018024(-)$1	311	108	154	25.4038
:JJJJJJJJJJJ{EEEEE::gggggggmmmmggggggg:ccc"""a	chr10:126480181-126480440(-)$1	259	46	92	22.7115
[ccccccmmmmccc]ccccccccc]ffffffddddCCCHHHHHHHH	chr5:145214688-145215011(-)$1	323	151	197	21.7499
eee22bb]dddd22a]dddd]aBBAEEEEE::ffffff[eeeeeee	chr16:89882878-89883153(-)$1	275	199	245	23.5769
mmma]dddd]dddd]eeeee::::ggggggg[bb####ggggggg#	chr2:27255802-27256119(+)$1	317	146	192	30.9807
{A{IIIIIIIIIKKBB{GGGGGGG{A{DDDD{CCCccc[ffffff[	chr17:76778176-76778471(-)$1	295	20	66	34.8269
{HHHHHHHH{BB{CCCLLLIIIIIIIII{DDDDEEEEE::dddd[c	chr17:79875814-79876126(-)$1	312	8	54	24.3461
}EEEEEFFFFFFGGGGGGG}HHHHHHHH~~~~FFFFFFZZZFFFFF	chr4:2263568-2263930(-)$1	362	306	352	33.2884
!a[ddddllldddd]a]bb]bb]bb]bb55555dddd]eeeee22g	chr1:6845467-6845736(+)$1	269	53	99	31.3653
DDD{GGGGGGGGGGGGGG{DDDDIIIIIIIIIDDDD{A{FFFFFFC	chr5:39074328-39074598(-)$1	270	14	60	26.6538
oooodddd]dddd333ccc333ffffff4444ffffffggggggg3	chr8:144922851-144923233(-)$1	382	170	216	28.0961
hh:::hhhhhhhhcccmmmmccc22hhhhhhhh::EEEEEHHHHHH	chr12:107168311-107168688(+)$1	377	50	96	20.8846
33eeeee:A}DDDD}EEEEEYYDDDD}FFFFFFddddeeeee[a!!	chr19:5719784-5720053(-)$1	269	170	216	31.6538
!ddddmmmmdddd22bbbb:BB}FFFFFF}EEEEEYYGGGGGGGZZ	chr2:179315596-179315894(-)$1	298	221	267	22.7115
{BBKKAKKCCC{BB{DDDD{A{CCC{DDDD{BB{CCCeeeee[eee	chr10:15210447-15210782(-)$1	335	17	63	36.4615
5a]ffffff]ffffff============]ccc55555ddddcccee	chr2:238969566-238969881(+)$1	315	121	167	28.0961
DDDKKCCC{A:::::GGGGGGG{AKKBB{DDDD{DDDD:::::ccc	chr1:213031661-213031926(+)$1	265	81	127	25.3076
mmmdddd::::eeeeemmmmeeeeeffffff####a!!ffffff##	chr19:6739618-6739897(+)$1	279	117	163	28.9615
CC{A{DDDDKKAQQQQQQQQCCC{JJJJJJJJJJJGGGGGGGffff	chr9:139137528-139137758(-)$1	230	4	50	23.5769
eJJJJJJJJJJJYYDDDD}CCC}FFFFFF}GGGGGGG}CCC}CCCC	chr5:140018940-140019325(+)$1	385	223	269	27.7115
ccc]bb]bb]dddd22ffffff::::::::::ccc[ddddbbdddd	chr4:74124235-74124487(-)$1	252	121	167	21.7499
bb]bb]dddd22a22ddddeeeee[ffffff[cccrrrrrrrrrcc	chr1:1334497-1334805(-)$1	308	120	166	26.9423
}BB}CCCAKKIIIIIIIIIBBKKBBMMMMDDDDBB{BBDDDD:ddd	chr16:4664676-4664984(-)$1	308	130	176	31.6538
a[cccbb[bbmmmmbb]bb]ccc]a]ggggggg]bbggggggg[dd	chr15:42867758-42868016(+)$1	258	32	78	31.1730
ppbb]bb]bbccc[bbmmmmbb]cccEEEEE:::hhhhhhhh"""=	chr6:43596717-43596982(-)$1	265	19	65	58.0961
#annnnna4444bb22dddd7777777a]ccc]ddddGGGGGGGff	chr2:54197699-54198040(-)$1	341	36	82	23.2884
fddddccc[cccpppppppccc]cccFFFFFFYYCCCYYEEEEE??	chr17:79213048-79213326(+)$1	278	221	267	26.9423
ffffffbb[a[a[dddd[a[ccc[allla]ccc]a]dddd]a]a]b	chr19:18794391-18794731(+)$1	340	293	339	25.2115

#DB
.(((.((....)).))).)))....((((.((..(((..(((((((	chr13:115000388-115000694(+)$1	1	60	106	34.5384
.(((((..(((.....((((.((.(((.(.((((..(....((.(.	chr9:140500029-140500286(+)$1	1	14	60	21.4615
))).))).))).)))).))).).((....))..(((((.(((....	chr14:23790622-23790853(+)$1	1	57	103	41.5576
))))))..).).).))))))))((.(((.((..(((((((((.((.	chr11:63933076-63933362(-)$1	1	77	123	27.7115
(((..((.(.(((.((((((..(((....)))..)))))).))).)	chr4:15656761-15657077(-)$1	1	123	169	24.6346
...((((.(.....((.((.......)).))...).))))......	chr16:68002301-68002619(-)$1	1	90	136	34.0576
......(.((((((((..(((((..(((((((((((..(((.....	chr1:19811827-19812127(-)$1	1	4	50	32.6153
((.(.((((..(((((((((....(((((((((((..(((.(((((	chr15:64443828-64444143(+)$1	1	4	50	25.3076
)))))).)))))))))).)).)))..(((((.....))))))))))	chr3:101231834-101232161(-)$1	1	280	326	25.5961
(((..((..((.(.((..(((((.......))))).)).).)).((	chr9:126692065-126692384(-)$1	1	32	78	32.1346
((((.((.((((((.((((.(..((.(....).))..).)))).))	chr20:62694475-62694770(+)$1	1	81	127	38.1923
.(((((((((..((.....))..))))).)))).))))..)).)))	chr8:21946595-21946916(+)$1	1	231	277	27.0384
)))))))).))..))))).)).)).)).))).))))))))).(((.	chr5:178977461-178977822(+)$1	1	111	157	24.5384
(.((((...))))..)))))))..)))).)))..))))).))))))	chr18:51750681-51750976(-)$1	1	247	293	34.3461
(((((.((((.(((.((((.(((((........)))).).)))).)	chr16:1728199-1728461(+)$1	1	137	183	24.7307
(((((.(.(((.((((.((.(.(((.....))).).)).)))).))	chr16:89894836-89895181(+)$1	1	130	176	25.2115
((.((((((((((........))))))))))(.((((((((((.(.	chr12:122150596-122150919(+)$1	1	4	50	20.9807
))).)))))))))).))))))))))))).)).))))))))...)))	chr16:88923103-88923455(-)$1	1	294	340	29.2499
.(((.(((........))).))).)).)))).))))))(((((.((	chr19:18632630-18632970(-)$1	1	29	75	26.7499
..)).)).)))))))(((.((((((((.....(((((((.((((((	chr2:208576456-208576737(+)$1	1	89	135	25.6923
.)))).)))))..))).)))))..))))))).))))).))))))))	chr20:442882-443149(-)$1	1	208	254	28.0961
)....)))))))...))))))))...))))))))....((.(((((	chr14:69619555-69619867(-)$1	1	135	181	28.6730
(.((((((((((((((((((..(((((((((((.(...(((((((.	chr16:2264605-2264887(-)$1	1	101	147	32.8076
))))))))))..)))))))((((((.(((((((((..((.((((((	chr6:88182593-88182905(+)$1	1	154	200	25.1153
))))))).((((((((((((.((((....)))).)))..)))))))	chr18:21017713-21018024(-)$1	1	108	154	25.4038
.(((((((((((.(((((..(((((((....))))))).(((...(	chr10:126480181-126480440(-)$1	1	46	92	22.7115
.((((((....))).))))))))).))))))))))(((((((((((	chr5:145214688-145215011(-)$1	1	151	197	21.7499
)))..)).))))..).)))).)))))))))..((((((.(((((((	chr16:89882878-89883153(-)$1	1	199	245	23.5769
...).)))).)))).)))))....(((((((.((....(((((((.	chr2:27255802-27256119(+)$1	1	146	192	30.9807
.(.(((((((((..((.(((((((.(.((((.((((((.((((((.	chr17:76778176-76778471(-)$1	1	20	66	34.8269
.((((((((.((.(((...(((((((((.(((((((((..((((.(	chr17:79875814-79876126(-)$1	1	8	54	24.3461
.)))))))))))))))))).))))))))....))))))...)))))	chr4:2263568-2263930(-)$1	1	306	352	33.2884
.(.((((...)))).).)).)).)).)).....)))).)))))..)	chr1:6845467-6845736(+)$1	1	53	99	31.3653
(((.((((((((((((((.(((((((((((((((((.(.(((((((	chr5:39074328-39074598(-)$1	1	14	60	26.6538
....)))).))))...)))...))))))....))))))))))))).	chr8:144922851-144923233(-)$1	1	170	216	28.0961
))...(((((((((((....)))..))))))))..(((((((((((	chr12:107168311-107168688(+)$1	1	50	96	20.8846
..))))).).)))).)))))..)))).))))))(((((((((.(..	chr19:5719784-5720053(-)$1	1	170	216	31.6538
.((((....))))..)))).)).)))))).)))))..)))))))..	chr2:179315596-179315894(-)$1	1	221	267	22.7115
.((..(..(((.((.((((.(.(((.((((.((.((((((((.(((	chr10:15210447-15210782(-)$1	1	17	63	36.4615
.).)))))).)))))))))))))))))).))).....)))))))((	chr2:238969566-238969881(+)$1	1	121	167	28.0961
(((..(((.(.....(((((((.(..((.((((.((((.....(((	chr1:213031661-213031926(+)$1	1	81	127	25.3076
...))))....(((((....)))))((((((....(..((((((..	chr19:6739618-6739897(+)$1	1	117	163	28.9615
((.(.((((..(........(((.((((((((((((((((((((((	chr9:139137528-139137758(-)$1	1	4	50	23.5769
))))))))))))..)))).))).)))))).))))))).))).))))	chr5:140018940-140019325(+)$1	1	223	269	27.7115
))).)).)).))))..))))))..........(((.((((((((((	chr4:74124235-74124487(-)$1	1	121	167	21.7499
)).)).))))..)..))))(((((.((((((.(((.........))	chr1:1334497-1334805(-)$1	1	120	166	26.9423
.)).)))(..(((((((((((..((....((((((.((((((.(((	chr16:4664676-4664984(-)$1	1	130	176	31.6538
(.(((((.((....)).)).))).).))))))).))(((((((.((	chr15:42867758-42868016(+)$1	1	32	78	31.1730
..)).)).))(((.((....)).)))(((((...((((((((...(	chr6:43596717-43596982(-)$1	1	19	65	58.0961
.(.....)....))..)))).......).))).))))(((((((((	chr2:54197699-54198040(-)$1	1	36	82	23.2884
)))))(((.(((.......))).)))))))))..)))..)))))..	chr17:79213048-79213326(+)$1	1	221	267	26.9423
))))))((.(.(.((((.(.(((.(...).))).).)))).).).)	chr19:18794391-18794731(+)$1	1	293	339	25.2115

#PSSM
G : 0.42	g : 0.30	U : 0.09	A : 0.05	C : 0.05	c : 0.03	u : 0.01	
g : 0.38	G : 0.34	U : 0.09	A : 0.07	c : 0.03	C : 0.03	u : 0.01	
g : 0.46	G : 0.44	C : 0.05	c : 0.01	U : 0.01	
c : 0.34	C : 0.30	A : 0.11	G : 0.07	g : 0.07	u : 0.05	U : 0.01	
g : 0.40	G : 0.36	U : 0.09	c : 0.05	C : 0.05	u : 0.01	
G : 0.40	g : 0.40	c : 0.07	C : 0.05	A : 0.03	U : 0.01	
C : 0.38	c : 0.34	G : 0.09	g : 0.07	a : 0.03	U : 0.01	u : 0.01	A : 0.01	
G : 0.36	g : 0.34	C : 0.07	c : 0.05	U : 0.05	a : 0.03	u : 0.03	A : 0.01	
g : 0.38	G : 0.36	U : 0.05	c : 0.05	u : 0.03	C : 0.03	A : 0.03	a : 0.01	
c : 0.28	C : 0.23	G : 0.15	g : 0.15	A : 0.09	u : 0.03	U : 0.01	a : 0.01	
G : 0.46	g : 0.34	c : 0.07	u : 0.03	a : 0.03	C : 0.03	
g : 0.26	G : 0.23	c : 0.15	C : 0.15	A : 0.07	a : 0.05	U : 0.03	u : 0.01	
C : 0.30	c : 0.30	g : 0.15	G : 0.11	A : 0.07	a : 0.03	
G : 0.38	g : 0.36	U : 0.09	u : 0.07	a : 0.03	c : 0.01	A : 0.01	
G : 0.40	g : 0.40	a : 0.07	C : 0.05	c : 0.01	U : 0.01	A : 0.01	
c : 0.36	C : 0.26	G : 0.09	A : 0.09	g : 0.05	u : 0.03	a : 0.03	U : 0.03	
G : 0.38	g : 0.34	c : 0.07	U : 0.05	A : 0.05	u : 0.03	a : 0.03	
g : 0.46	G : 0.42	C : 0.05	U : 0.01	c : 0.01	u : 0.01	
C : 0.34	c : 0.28	g : 0.17	A : 0.09	u : 0.03	G : 0.03	U : 0.01	
g : 0.34	G : 0.32	c : 0.09	u : 0.05	U : 0.05	C : 0.05	A : 0.03	a : 0.01	
g : 0.40	G : 0.34	c : 0.09	C : 0.05	U : 0.03	a : 0.01	A : 0.01	u : 0.01	
c : 0.34	G : 0.19	g : 0.13	C : 0.11	U : 0.09	a : 0.05	A : 0.05	
g : 0.42	G : 0.24	U : 0.13	a : 0.07	C : 0.03	c : 0.03	u : 0.01	A : 0.01	
g : 0.46	G : 0.34	C : 0.07	c : 0.07	A : 0.01	a : 0.01	
c : 0.24	g : 0.23	G : 0.15	C : 0.11	U : 0.11	A : 0.07	a : 0.05	
G : 0.24	c : 0.24	g : 0.17	C : 0.11	u : 0.05	a : 0.05	U : 0.05	A : 0.03	
g : 0.42	G : 0.34	c : 0.11	C : 0.09	u : 0.01	
g : 0.32	G : 0.28	c : 0.13	C : 0.13	u : 0.05	U : 0.03	a : 0.01	
g : 0.44	G : 0.21	A : 0.15	C : 0.05	a : 0.05	u : 0.03	c : 0.01	U : 0.01	
g : 0.49	G : 0.28	C : 0.07	A : 0.03	U : 0.03	c : 0.03	u : 0.01	
g : 0.28	G : 0.28	c : 0.21	C : 0.09	U : 0.05	A : 0.03	a : 0.01	
c : 0.24	G : 0.19	g : 0.15	C : 0.13	A : 0.11	u : 0.05	U : 0.05	a : 0.03	
g : 0.40	G : 0.34	c : 0.09	C : 0.07	A : 0.05	U : 0.01	
g : 0.42	G : 0.36	C : 0.09	a : 0.07	c : 0.01	U : 0.01	
g : 0.36	G : 0.24	C : 0.13	c : 0.13	A : 0.09	u : 0.01	
g : 0.46	G : 0.28	A : 0.13	c : 0.03	U : 0.03	C : 0.01	a : 0.01	
c : 0.30	C : 0.24	G : 0.17	g : 0.15	A : 0.03	U : 0.03	a : 0.01	u : 0.01	
c : 0.26	C : 0.23	g : 0.11	U : 0.11	G : 0.09	a : 0.07	A : 0.05	u : 0.03	
g : 0.40	G : 0.38	C : 0.07	u : 0.05	U : 0.03	c : 0.03	
G : 0.34	g : 0.34	c : 0.11	C : 0.09	A : 0.05	a : 0.01	u : 0.01	
g : 0.38	G : 0.32	c : 0.09	C : 0.07	A : 0.05	U : 0.03	a : 0.01	
C : 0.30	g : 0.23	c : 0.19	G : 0.09	A : 0.07	a : 0.05	U : 0.03	
g : 0.34	G : 0.28	U : 0.09	c : 0.07	A : 0.07	C : 0.07	a : 0.03	
G : 0.40	g : 0.30	c : 0.07	A : 0.07	U : 0.05	C : 0.03	a : 0.03	
G : 0.36	g : 0.30	C : 0.15	A : 0.05	a : 0.03	c : 0.03	u : 0.01	U : 0.01	
G : 0.38	g : 0.24	C : 0.17	c : 0.09	u : 0.05	A : 0.03	

#score	1484.4615384615352
#seq	52
#width	46
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_transcript_m1_run1.nuc.txt

#NT
gaagaagaggagguggaggaagaa	chr1:52305876-52306147(-)$1	271	52	76	38.6666
gaggaggggguggaggaggaagaa	chr21:39550643-39550921(+)$1	278	100	124	30.4210
GUAGAAGAGAAGAAAGAAGAAGAA	chr12:6687578-6687813(-)$1	235	97	121	32.8771
gaugaaggugaagaagaugaagau	chr9:131456217-131456421(+)$1	204	56	80	41.0350
gaagaaggagaggaagaggaggaa	chr4:88255504-88255822(-)$1	318	68	92	40.0701
GUAGAUGACGAGGAAGAUGAAGAA	chr15:69072648-69072853(-)$1	205	71	95	35.4210
gaggaagagaaaggugagaaagaa	chr4:13338728-13338982(+)$1	254	63	87	33.4035
GAAGAUGAGGGAGAAGAUGAUGAC	chr15:69072327-69072582(-)$1	255	136	160	34.0175
gaagauguggaggaagaugaagaa	chr4:69202683-69203058(-)$1	375	49	73	38.6666
GAAGAAAGUGAAGAUGAAGAAGAU	chr3:142761906-142762188(+)$1	282	59	83	39.1929
gaagaaggagaaggagaagaagaa	chr9:136905107-136905426(-)$1	319	106	130	42.7017
GAAGAAGGUGAAGAAGCGGAUGAG	chr12:76443453-76443662(-)$1	209	103	127	35.6842
GAAGUAGAGAAGGAAAAACAAGAA	chr1:186315208-186315469(-)$1	261	134	158	29.1052
GAAGAUGAUGAAGCCGAGGUAGAA	chr6:7310046-7310254(-)$1	208	60	84	32.7894
gaugaaggagaagaugauuaagaC	chr9:100777578-100777790(+)$1	212	114	138	35.7719
gaagaaggagaaggagaagaagau	chr9:131456140-131456389(+)$1	249	52	76	40.9473
GAGGAAGAGGAUGGAGAUGAAGAU	chr2:232577052-232577258(+)$1	206	102	126	35.3333
UUagaaggagaagaugaggaagac	chr9:100773475-100773719(+)$1	244	73	97	34.4561
gaggaagagaaaggugagaaagaa	chr6:44218005-44218223(+)$1	218	64	88	33.4035
gaaaaagaaaaagaagaaaacgaa	chr20:60711717-60711987(-)$1	270	24	48	32.3508
GAAGAAGAUGAAGAUGAGGAUGAG	chr9:100774602-100774804(+)$1	202	121	145	40.1578
gaaaaaguggcagaagaagaagaa	chr2:203167633-203167881(+)$1	248	27	51	36.0350
gaagaagaagaagaagauuaagga	chr14:102550964-102551189(-)$1	225	12	36	39.0175
gaagaaggggaagaagaggaagaa	chr1:150195410-150195666(-)$1	256	127	151	47.0877
gaagaugaugaagaggaggaugaa	chr20:13756481-13756854(-)$1	373	117	141	38.8421
gaugaaggagaagaugauuaagaC	chr9:100777590-100777803(+)$1	213	102	126	35.7719
gaagaaagauaagaagaaaaagaa	chr2:99980007-99980389(+)$1	382	122	146	35.4210
gaggaagaggaagaggaggaagaa	chr7:128434301-128434581(+)$1	280	135	159	42.7894
GAAGAAUCAGAAGAAGAAGAAAAU	chr3:142757634-142757893(+)$1	259	139	163	34.1052
GAAGAAAGUGAAGAUGAAGAAGAU	chr3:142761871-142762106(+)$1	235	94	118	39.1929
gaagaagaaaaagaagaagaagaa	chr12:95876888-95877159(+)$1	271	136	160	44.1929
GAAGAAAGUGAAGAUGAAGAAGAU	chr3:142761856-142762071(+)$1	215	109	133	39.1929
GAGGUagacgaagaagaggaagaa	chr2:232576551-232576778(+)$1	227	81	105	38.9298
GAAGAUGAGAAAAAAGAUGAAGAA	chr12:76449711-76449942(-)$1	231	28	52	36.8245
caagaggaggaagaggaggaugaa	chrX:64737892-64738188(-)$1	296	156	180	34.6315
Aaagaagaggaagaagaugaugau	chr19:14200024-14200274(-)$1	250	127	151	38.3157
gaagaggagcaagaaaagaaaaAA	chr15:41756868-41757179(+)$1	311	167	191	28.5789
gcaguagaggaagaagaagaagaa	chr12:104332046-104332293(+)$1	247	146	170	38.7543
gaagaggaggaagaugaggaagau	chr13:31035379-31035665(-)$1	286	79	103	41.3859
gaugaaggugaagaagaugaagau	chr9:131456196-131456417(+)$1	221	77	101	41.0350
gaagaaauggaggaugagcaagaa	chr11:35684969-35685315(+)$1	346	80	104	33.8421
AAAGAAGAAGAAGAAAAGCAAGAU	chr17:34942442-34942724(+)$1	282	143	167	34.2807
ggauaagaagaagaaaacuaagaa	chr6:44218157-44218392(+)$1	235	10	34	29.3684
GAUGAAGAUGAAGGGGAGGAGGAU	chr17:27001280-27001558(+)$1	278	97	121	33.3157
gaugaagguggaaaugaggaagaa	chrX:80370056-80370379(-)$1	323	103	127	33.2280
AAAGAAGUAGAAGAAGAUGAAUAC	chr12:104333186-104333452(+)$1	266	166	190	33.5789
gaggaagauaaagaugaugaagaa	chr6:44218090-44218302(+)$1	212	3	27	39.2807
gaugaaggagaagaugauuaagaC	chr9:100777550-100777778(+)$1	228	142	166	35.7719
gaagaaaaggaagacaaagaagaa	chr14:102551225-102551436(-)$1	211	143	167	37.1754
Aaagaagaagaaaaagaagaagaa	chr1:31836829-31837137(+)$1	308	162	186	38.9298
GAAGAAAGAAAAGAAGAGGAGGAA	chr1:22041775-22042049(-)$1	274	110	134	36.3859
gaagaagaggaugaggaugaagaU	chr1:71537762-71538017(-)$1	255	166	190	39.8947
GAAGAUGGUUAUGAAGAAGAAGAA	chr17:73664500-73664813(+)$1	313	160	184	35.3333
GAAGAAGAUGAAGAUGAGGAUGAG	chr9:100774627-100774854(+)$1	227	96	120	40.1578
gaagaaggagaaggagaagaagau	chr9:131456113-131456340(+)$1	227	79	103	40.9473
gaagaagaugaagaugaggaggaa	chr4:174253118-174253330(-)$1	212	55	79	42.6140

#otherMatches

#Struct PSSM
B}A}CCCYYGGGGGGG}A}AZZZE	chr15:69072697-69072912(-)$1	215	130	154	35.4210
UUUUUUUUUUUEEEEE::::bb##	chr1:52305876-52306147(-)$1	271	52	76	38.6666
^^^^^^^^^^^^^^^^^^^^^^^^	chr21:39550643-39550921(+)$1	278	100	124	30.4210
pppppppdddd7777777iiiiii	chr12:6687578-6687813(-)$1	235	97	121	32.8771
ggggg!!eeeee%%%%%%dddd[b	chr9:131456217-131456421(+)$1	204	56	80	41.0350
>>>>>>>>>>>>>>>>>dddd22d	chr4:88255504-88255822(-)$1	318	68	92	40.0701
))))))))aooooooa>>>>>>>>	chr15:69072648-69072853(-)$1	205	71	95	35.4210
::::::::::::::::::::::::	chr4:13338728-13338982(+)$1	254	63	87	33.4035
c::dddd[ccc[ffffffccc[bb	chr15:69072327-69072582(-)$1	255	136	160	34.0175
NNNNNCCC{CCC::::::::::::	chr4:69202683-69203058(-)$1	375	49	73	38.6666
ccJJJJJJJJJJJJ:CCCOOOOOO	chr3:142761906-142762188(+)$1	282	59	83	39.1929
dd333cccBBYYGGGGGGG}BB??	chr9:136905107-136905426(-)$1	319	106	130	42.7017
b]ffffff]dddd]dddd22dddd	chr12:76443453-76443662(-)$1	209	103	127	35.6842
::::::::dddduuuuuuuuuuuu	chr1:186315208-186315469(-)$1	261	134	158	29.1052
KKFFFFFF:::ggggggg^^^^^^	chr6:7310046-7310254(-)$1	208	60	84	32.7894
[bb"""bbyyyyyyyyyyyyyyyy	chr9:100777578-100777790(+)$1	212	114	138	35.7719
=============]a]bb::::bb	chr9:131456140-131456389(+)$1	249	52	76	40.9473
oobb]gggggggFFFFFF?????G	chr2:232577052-232577258(+)$1	206	102	126	35.3333
==="""a^^^^^^^^^^^^^^^^^	chr9:100773475-100773719(+)$1	244	73	97	34.4561
====::::::::::::::::::::	chr6:44218005-44218223(+)$1	218	64	88	33.4035
===========bbeeeee[ccc##	chr20:60711717-60711987(-)$1	270	24	48	32.3508
!!ddddccc[ffffff[a[bb[cc	chr9:100774602-100774804(+)$1	202	121	145	40.1578
DDDD:::a[eeeeevvvvvvvvvv	chr2:203167633-203167881(+)$1	248	27	51	36.0350
:::BB{EEEEE{BB{DDDDEEEEE	chr14:102550964-102551189(-)$1	225	12	36	39.0175
::::::::::::::::::::::::	chr1:150195410-150195666(-)$1	256	127	151	47.0877
]a22bb22eeeee:::::::::::	chr20:13756481-13756854(-)$1	373	117	141	38.8421
!dddd[a[bb+++++++++++ddd	chr9:100777590-100777803(+)$1	213	102	126	35.7719
iii]dddd4444dddd55555ddd	chr2:99980007-99980389(+)$1	382	122	146	35.4210
::::::::::::::::::::::::	chr7:128434301-128434581(+)$1	280	135	159	42.7894
dddd:::::ccc[ffffff####f	chr3:142757634-142757893(+)$1	259	139	163	34.1052
bdddd]ccc::CCC{CCCOOOOOO	chr3:142761871-142762106(+)$1	235	94	118	39.1929
b:::::::::::::::::::::::	chr12:95876888-95877159(+)$1	271	136	160	44.1929
bdddd]dddd:dddd"""cccttt	chr3:142761856-142762071(+)$1	215	109	133	39.1929
::a[eeeee[ccc"""iiiiiiii	chr2:232576551-232576778(+)$1	227	81	105	38.9298
HHHHH{CCC::::eeeee!!bb$$	chr12:76449711-76449942(-)$1	231	28	52	36.8245
DDD:::::::::::::::::::::	chrX:64737892-64738188(-)$1	296	156	180	34.6315
mccc::EEEEE}CCCYYDDDD:::	chr19:14200024-14200274(-)$1	250	127	151	38.3157
@@@@CCCEEEEECCC::::::::b	chr15:41756868-41757179(+)$1	311	167	191	28.5789
ee:dddd[ccc[bb++++++++++	chr12:104332046-104332293(+)$1	247	146	170	38.7543
+hhhhhhhh!!bb[bb++++++++	chr13:31035379-31035665(-)$1	286	79	103	41.3859
::::::::::::::::::::::::	chr9:131456196-131456417(+)$1	221	77	101	41.0350
::::::::::CCC{BBKKDDDD{D	chr11:35684969-35685315(+)$1	346	80	104	33.8421
::::::::::::::::::::::::	chr17:34942442-34942724(+)$1	282	143	167	34.2807
:::::::::::::::DDDD:::::	chr6:44218157-44218392(+)$1	235	10	34	29.3684
hhhhhhhCCC::DDDDKKEEEEE{	chr17:27001280-27001558(+)$1	278	97	121	33.3157
:IIIIIIIII::::::::::::::	chrX:80370056-80370379(-)$1	323	103	127	33.2280
::::::::::::hhhhhhhh^^^^	chr12:104333186-104333452(+)$1	266	166	190	33.5789
:CCC::::::::::::::::::::	chr6:44218090-44218302(+)$1	212	3	27	39.2807
[bbssssssssssbb]ccc:::::	chr9:100777550-100777778(+)$1	228	142	166	35.7719
}CCC::::::::::::::::::::	chr14:102551225-102551436(-)$1	211	143	167	37.1754
::::::::::::::::::::::::	chr1:31836829-31837137(+)$1	308	162	186	38.9298
===EEEEE{JJJJJJJJJJJ{A::	chr1:22041775-22042049(-)$1	274	110	134	36.3859
dddd"""==========bb"""ee	chr1:71537762-71538017(-)$1	255	166	190	39.8947
HHHHHHHH}BBYYFFFFFFGGGGG	chr17:73664500-73664813(+)$1	313	160	184	35.3333
gggggg:::::FFFFFFEEEEE::	chr9:100774627-100774854(+)$1	227	96	120	40.1578
=============]a]bb::::bb	chr9:131456113-131456340(+)$1	227	79	103	40.9473
:::::::::::::::::::::::h	chr4:174253118-174253330(-)$1	212	55	79	42.6140

#DB
).).)))..))))))).).)...)	chr15:69072697-69072912(-)$1	1	130	154	35.4210
...........(((((....((..	chr1:52305876-52306147(-)$1	1	52	76	38.6666
........................	chr21:39550643-39550921(+)$1	1	100	124	30.4210
.......)))).......))))))	chr12:6687578-6687813(-)$1	1	97	121	32.8771
(((((..(((((......((((.(	chr9:131456217-131456421(+)$1	1	56	80	41.0350
.................))))..)	chr4:88255504-88255822(-)$1	1	68	92	40.0701
........(......)........	chr15:69072648-69072853(-)$1	1	71	95	35.4210
........................	chr4:13338728-13338982(+)$1	1	63	87	33.4035
)..((((.(((.(((((((((.((	chr15:69072327-69072582(-)$1	1	136	160	34.0175
.....(((.(((............	chr4:69202683-69203058(-)$1	1	49	73	38.6666
))((((((((((((.(((......	chr3:142761906-142762188(+)$1	1	59	83	39.1929
))...)))))..))))))).))..	chr9:136905107-136905426(-)$1	1	106	130	42.7017
).)))))).)))).))))..))))	chr12:76443453-76443662(-)$1	1	103	127	35.6842
........((((............	chr1:186315208-186315469(-)$1	1	134	158	29.1052
..((((((...(((((((......	chr6:7310046-7310254(-)$1	1	60	84	32.7894
.((...((................	chr9:100777578-100777790(+)$1	1	114	138	35.7719
))))))))))))).).))....((	chr9:131456140-131456389(+)$1	1	52	76	40.9473
..)).))))))))))))).....)	chr2:232577052-232577258(+)$1	1	102	126	35.3333
(((...(.................	chr9:100773475-100773719(+)$1	1	73	97	34.4561
))))....................	chr6:44218005-44218223(+)$1	1	64	88	33.4035
((((((((((((((((((.(((..	chr20:60711717-60711987(-)$1	1	24	48	32.3508
..(((((((.((((((.(.((.((	chr9:100774602-100774804(+)$1	1	121	145	40.1578
((((...(.(((((..........	chr2:203167633-203167881(+)$1	1	27	51	36.0350
...((.(((((.((.(((((((((	chr14:102550964-102551189(-)$1	1	12	36	39.0175
........................	chr1:150195410-150195666(-)$1	1	127	151	47.0877
.)..))..)))))...........	chr20:13756481-13756854(-)$1	1	117	141	38.8421
.((((.(.((...........(((	chr9:100777590-100777803(+)$1	1	102	126	35.7719
))).))))....)))).....)))	chr2:99980007-99980389(+)$1	1	122	146	35.4210
........................	chr7:128434301-128434581(+)$1	1	135	159	42.7894
)))).....(((.((((((....(	chr3:142757634-142757893(+)$1	1	139	163	34.1052
))))).)))..(((.(((......	chr3:142761871-142762106(+)$1	1	94	118	39.1929
).......................	chr12:95876888-95877159(+)$1	1	136	160	44.1929
))))).)))).((((...(((...	chr3:142761856-142762071(+)$1	1	109	133	39.1929
..(.(((((.(((...((((((((	chr2:232576551-232576778(+)$1	1	81	105	38.9298
(((((.(((....(((((..((..	chr12:76449711-76449942(-)$1	1	28	52	36.8245
))).....................	chrX:64737892-64738188(-)$1	1	156	180	34.6315
.)))..))))).)))..))))...	chr19:14200024-14200274(-)$1	1	127	151	38.3157
....)))))))))))........(	chr15:41756868-41757179(+)$1	1	167	191	28.5789
)).((((.(((.((..........	chr12:104332046-104332293(+)$1	1	146	170	38.7543
.((((((((..((.((........	chr13:31035379-31035665(-)$1	1	79	103	41.3859
........................	chr9:131456196-131456417(+)$1	1	77	101	41.0350
..........(((.((..((((.(	chr11:35684969-35685315(+)$1	1	80	104	33.8421
........................	chr17:34942442-34942724(+)$1	1	143	167	34.2807
...............((((.....	chr6:44218157-44218392(+)$1	1	10	34	29.3684
))))))))))..((((..(((((.	chr17:27001280-27001558(+)$1	1	97	121	33.3157
.(((((((((..............	chrX:80370056-80370379(-)$1	1	103	127	33.2280
............((((((((....	chr12:104333186-104333452(+)$1	1	166	190	33.5789
.(((....................	chr6:44218090-44218302(+)$1	1	3	27	39.2807
.((..........)).))).....	chr9:100777550-100777778(+)$1	1	142	166	35.7719
.)))....................	chr14:102551225-102551436(-)$1	1	143	167	37.1754
........................	chr1:31836829-31837137(+)$1	1	162	186	38.9298
)))(((((.(((((((((((.(..	chr1:22041775-22042049(-)$1	1	110	134	36.3859
((((...((((((((((((...((	chr1:71537762-71538017(-)$1	1	166	190	39.8947
)))))))).))..)))))))))))	chr17:73664500-73664813(+)$1	1	160	184	35.3333
)))))).....(((((((((((..	chr9:100774627-100774854(+)$1	1	96	120	40.1578
))))))))))))).).))....((	chr9:131456113-131456340(+)$1	1	79	103	40.9473
.......................(	chr4:174253118-174253330(-)$1	1	55	79	42.6140

#PSSM
g : 0.56	G : 0.33	A : 0.07	U : 0.01	c : 0.01	
a : 0.57	A : 0.31	U : 0.07	c : 0.01	g : 0.01	
a : 0.43	A : 0.31	u : 0.10	g : 0.08	G : 0.03	U : 0.01	
g : 0.57	G : 0.36	a : 0.03	u : 0.01	
a : 0.61	A : 0.33	U : 0.03	u : 0.01	
a : 0.54	A : 0.24	U : 0.10	g : 0.07	u : 0.03	
g : 0.59	G : 0.26	A : 0.07	a : 0.05	U : 0.01	
a : 0.35	g : 0.24	A : 0.21	G : 0.10	u : 0.05	C : 0.01	U : 0.01	
g : 0.28	a : 0.24	U : 0.15	u : 0.10	G : 0.08	A : 0.07	C : 0.03	c : 0.01	
g : 0.52	G : 0.26	a : 0.08	A : 0.07	u : 0.01	c : 0.01	U : 0.01	
a : 0.59	A : 0.33	u : 0.01	G : 0.01	c : 0.01	g : 0.01	
a : 0.54	A : 0.24	g : 0.08	G : 0.07	U : 0.03	u : 0.01	
g : 0.61	G : 0.31	A : 0.03	a : 0.03	
a : 0.54	A : 0.29	g : 0.08	G : 0.03	u : 0.01	C : 0.01	
a : 0.33	A : 0.22	u : 0.19	g : 0.10	U : 0.08	C : 0.01	G : 0.01	c : 0.01	
g : 0.59	G : 0.31	a : 0.05	A : 0.03	
a : 0.64	A : 0.33	C : 0.01	
g : 0.28	u : 0.17	a : 0.17	A : 0.12	G : 0.12	U : 0.10	c : 0.01	
g : 0.45	G : 0.31	a : 0.08	u : 0.08	C : 0.03	c : 0.01	
a : 0.64	A : 0.33	U : 0.01	
a : 0.54	A : 0.24	U : 0.07	u : 0.05	g : 0.03	G : 0.03	c : 0.01	
g : 0.63	G : 0.31	A : 0.01	a : 0.01	U : 0.01	
a : 0.61	A : 0.36	g : 0.01	
a : 0.43	A : 0.15	U : 0.14	u : 0.10	C : 0.08	G : 0.05	c : 0.01	

#score	2106.105263157895
#seq	57
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_UTR_m3_run2.nuc.txt

#NT
AUG	chr15:65869205-65869421(+)$1	216	144	147	8.9999
AUG	chr17:3572805-3573048(+)$1	243	33	36	8.9999
AUG	chr20:34237418-34237671(-)$1	253	38	41	8.9999
AUG	chr19:2428916-2429210(-)$1	294	66	69	8.9999
AUG	chr15:93570518-93570797(+)$1	279	87	90	8.9999
AUG	chr3:152180592-152180855(+)$1	263	48	51	8.9999
AUG	chr12:123899870-123900136(-)$1	266	36	39	8.9999
AUG	chr17:57812637-57812924(+)$1	287	18	21	8.9999
AUG	chr17:26522116-26522343(+)$1	227	24	27	8.9999
AUG	chr2:220078758-220079008(-)$1	250	3	6	8.9999
aug	chr2:37430586-37430857(+)$1	271	98	101	8.9999
AUG	chr8:37707138-37707431(-)$1	293	130	133	8.9999
AUG	chr1:150547869-150548081(-)$1	212	102	105	8.9999
AUG	chr3:49137907-49138116(-)$1	209	16	19	8.9999
AUG	chr9:115447017-115447321(-)$1	304	87	90	8.9999
AUG	chr12:54626736-54626953(-)$1	217	40	43	8.9999
AUG	chr19:6368559-6368814(+)$1	255	15	18	8.9999
AUG	chr11:71808391-71808714(-)$1	323	57	60	8.9999
AUG	chr10:98984468-98984745(-)$1	277	1	4	8.9999
AUG	chr12:56538152-56538391(+)$1	239	43	46	8.9999
AUG	chr3:127337925-127338216(+)$1	291	23	26	8.9999
AUG	chr19:51835517-51835782(-)$1	265	39	42	8.9999
AUG	chr3:39437857-39438174(+)$1	317	35	38	8.9999
AUG	chr11:64854689-64854912(+)$1	223	0	3	8.9999
AUG	chr11:62327148-62327351(-)$1	203	21	24	8.9999
AUG	chr6:10756815-10757093(+)$1	278	126	129	8.9999
AUG	chr17:29664735-29664944(+)$1	209	21	24	8.9999
AUG	chr10:76940210-76940422(+)$1	212	143	146	8.9999
AUG	chr3:138430953-138431168(-)$1	215	3	6	8.9999
AUG	chr16:1872765-1873130(-)$1	365	160	163	8.9999
AUG	chr6:13316767-13317039(-)$1	272	45	48	8.9999
AUG	chr18:33749924-33750173(+)$1	249	30	33	8.9999
AUG	chr22:19384207-19384472(-)$1	265	51	54	8.9999
AUG	chr14:96010485-96010772(+)$1	287	16	19	8.9999
AUG	chr1:26612269-26612572(-)$1	303	203	206	8.9999
AUG	chr8:99054772-99054974(-)$1	202	55	58	8.9999
AUG	chr9:75766689-75766943(+)$1	254	210	213	8.9999
AUG	chr3:45721398-45721651(+)$1	253	9	12	8.9999
AUG	chr12:120636255-120636458(-)$1	203	34	37	8.9999
AUG	chr5:167932923-167933157(+)$1	234	34	37	8.9999
AUG	chr11:67938381-67938658(-)$1	277	66	69	8.9999
AUG	chr14:23421455-23421764(-)$1	309	98	101	8.9999
AUG	chr1:55230033-55230242(-)$1	209	161	164	8.9999
AUG	chr3:176738616-176738883(-)$1	267	53	56	8.9999
AUG	chr9:37439189-37439446(-)$1	257	49	52	8.9999
AUG	chr1:15755811-15756068(+)$1	257	44	47	8.9999
AUG	chr2:96850575-96850827(-)$1	252	23	26	8.9999
AUG	chr3:10342626-10342855(-)$1	229	36	39	8.9999
AUG	chr18:19449441-19449691(+)$1	250	58	61	8.9999
AUG	chr3:12940283-12940569(-)$1	286	94	97	8.9999
AUG	chr1:9908999-9909249(-)$1	250	103	106	8.9999
AUG	chr17:47905457-47905733(+)$1	276	22	25	8.9999
AUG	chr2:26413940-26414155(-)$1	215	2	5	8.9999
AUG	chr17:47005838-47006092(+)$1	254	24	27	8.9999
AUG	chr8:17141963-17142217(+)$1	254	64	67	8.9999
AUG	chr6:150047596-150047900(-)$1	304	11	14	8.9999
AUG	chr16:71961906-71962152(+)$1	246	91	94	8.9999
AUG	chr20:34241492-34241753(-)$1	261	36	39	8.9999
AUG	chr1:228682524-228682755(+)$1	231	37	40	8.9999
AUG	chr19:49684511-49684747(+)$1	236	11	14	8.9999
AUG	chr18:32914652-32914898(-)$1	246	79	82	8.9999
AUG	chr18:54281564-54281852(-)$1	288	40	43	8.9999
AUG	chr7:92087017-92087277(+)$1	260	6	9	8.9999
AUG	chr8:134249476-134249791(-)$1	315	192	195	8.9999
AUG	chr2:74331042-74331298(+)$1	256	4	7	8.9999
AUG	chr1:249143295-249143585(+)$1	290	52	55	8.9999
AUG	chr11:118923311-118923530(-)$1	219	17	20	8.9999
AUG	chr18:43669719-43670015(-)$1	296	28	31	8.9999
AUG	chr2:69053579-69053827(+)$1	248	166	169	8.9999
AUG	chr20:56073077-56073415(-)$1	338	3	6	8.9999
AUG	chr7:98992548-98992801(-)$1	253	119	122	8.9999
AUG	chr12:46754799-46755069(-)$1	270	20	23	8.9999
AUG	chr15:41059682-41059953(+)$1	271	8	11	8.9999
AUG	chr1:156712917-156713157(-)$1	240	68	71	8.9999
AUG	chr22:36872680-36872977(-)$1	297	23	26	8.9999
AUG	chr8:41479105-41479423(+)$1	318	30	33	8.9999
AUG	chr15:58287174-58287426(-)$1	252	72	75	8.9999
AUG	chr11:63743700-63743945(+)$1	245	151	154	8.9999
aug	chr19:36728985-36729239(+)$1	254	28	31	8.9999
AUG	chr1:27180773-27181022(+)$1	249	1	4	8.9999
AUG	chr1:156436623-156436914(-)$1	291	21	24	8.9999
AUG	chr1:40206963-40207181(+)$1	218	158	161	8.9999
AUG	chr10:75882200-75882455(-)$1	255	60	63	8.9999
AUG	chr4:13485777-13486061(-)$1	284	121	124	8.9999
AUG	chr6:7289455-7289671(-)$1	216	23	26	8.9999
AUG	chr1:36769675-36769888(+)$1	213	130	133	8.9999
AUG	chr11:32608538-32608791(+)$1	253	92	95	8.9999
AUG	chr6:33240391-33240597(+)$1	206	71	74	8.9999
AUG	chr2:97525736-97525973(-)$1	237	34	37	8.9999
AUG	chr2:87003934-87004215(+)$1	281	57	60	8.9999
AUG	chrX:138810302-138810592(-)$1	290	8	11	8.9999
AUG	chr2:38545958-38546236(-)$1	278	5	8	8.9999
AUG	chr18:55230007-55230283(-)$1	276	38	41	8.9999
AUG	chr17:37009221-37009431(-)$1	210	1	4	8.9999
AUG	chr16:70588337-70588600(+)$1	263	11	14	8.9999
AUG	chr1:31732770-31733016(-)$1	246	80	83	8.9999

#otherMatches

#Struct PSSM
""f	chr11:47800419-47800641(-)$1	222	85	88	8.9999
nff	chr15:65869205-65869421(+)$1	216	144	147	8.9999
ee!	chr17:3572805-3573048(+)$1	243	33	36	8.9999
gg"	chr20:34237418-34237671(-)$1	253	38	41	8.9999
HHH	chr19:2428916-2429210(-)$1	294	66	69	8.9999
]bb	chr15:93570518-93570797(+)$1	279	87	90	8.9999
fff	chr3:152180592-152180855(+)$1	263	48	51	8.9999
b[c	chr12:123899870-123900136(-)$1	266	36	39	8.9999
$$g	chr17:57812637-57812924(+)$1	287	18	21	8.9999
$bb	chr17:26522116-26522343(+)$1	227	24	27	8.9999
III	chr2:220078758-220079008(-)$1	250	3	6	8.9999
EEE	chr2:37430586-37430857(+)$1	271	98	101	8.9999
+++	chr8:37707138-37707431(-)$1	293	130	133	8.9999
d[c	chr1:150547869-150548081(-)$1	212	102	105	8.9999
mdd	chr3:49137907-49138116(-)$1	209	16	19	8.9999
QDD	chr9:115447017-115447321(-)$1	304	87	90	8.9999
::c	chr12:54626736-54626953(-)$1	217	40	43	8.9999
ddd	chr19:6368559-6368814(+)$1	255	15	18	8.9999
F{H	chr11:71808391-71808714(-)$1	323	57	60	8.9999
:::	chr10:98984468-98984745(-)$1	277	1	4	8.9999
b[d	chr12:56538152-56538391(+)$1	239	43	46	8.9999
{A{	chr3:127337925-127338216(+)$1	291	23	26	8.9999
:::	chr19:51835517-51835782(-)$1	265	39	42	8.9999
NNC	chr3:39437857-39438174(+)$1	317	35	38	8.9999
:DD	chr11:64854689-64854912(+)$1	223	0	3	8.9999
JJJ	chr11:62327148-62327351(-)$1	203	21	24	8.9999
ddd	chr6:10756815-10757093(+)$1	278	126	129	8.9999
eee	chr17:29664735-29664944(+)$1	209	21	24	8.9999
:::	chr10:76940210-76940422(+)$1	212	143	146	8.9999
!cc	chr3:138430953-138431168(-)$1	215	3	6	8.9999
BBY	chr16:1872765-1873130(-)$1	365	160	163	8.9999
]cc	chr6:13316767-13317039(-)$1	272	45	48	8.9999
hhh	chr18:33749924-33750173(+)$1	249	30	33	8.9999
ppp	chr22:19384207-19384472(-)$1	265	51	54	8.9999
:::	chr14:96010485-96010772(+)$1	287	16	19	8.9999
#cc	chr1:26612269-26612572(-)$1	303	203	206	8.9999
LDD	chr8:99054772-99054974(-)$1	202	55	58	8.9999
ccc	chr9:75766689-75766943(+)$1	254	210	213	8.9999
JJf	chr3:45721398-45721651(+)$1	253	9	12	8.9999
:ii	chr12:120636255-120636458(-)$1	203	34	37	8.9999
hhh	chr5:167932923-167933157(+)$1	234	34	37	8.9999
c[f	chr11:67938381-67938658(-)$1	277	66	69	8.9999
sss	chr14:23421455-23421764(-)$1	309	98	101	8.9999
qqq	chr1:55230033-55230242(-)$1	209	161	164	8.9999
(ee	chr3:176738616-176738883(-)$1	267	53	56	8.9999
fff	chr9:37439189-37439446(-)$1	257	49	52	8.9999
!dd	chr1:15755811-15756068(+)$1	257	44	47	8.9999
::=	chr2:96850575-96850827(-)$1	252	23	26	8.9999
fff	chr3:10342626-10342855(-)$1	229	36	39	8.9999
hhh	chr18:19449441-19449691(+)$1	250	58	61	8.9999
"""	chr3:12940283-12940569(-)$1	286	94	97	8.9999
oa]	chr1:9908999-9909249(-)$1	250	103	106	8.9999
KEE	chr17:47905457-47905733(+)$1	276	22	25	8.9999
::c	chr2:26413940-26414155(-)$1	215	2	5	8.9999
{CC	chr17:47005838-47006092(+)$1	254	24	27	8.9999
:::	chr8:17141963-17142217(+)$1	254	64	67	8.9999
KHH	chr6:150047596-150047900(-)$1	304	11	14	8.9999
[a[	chr16:71961906-71962152(+)$1	246	91	94	8.9999
dd[	chr20:34241492-34241753(-)$1	261	36	39	8.9999
III	chr1:228682524-228682755(+)$1	231	37	40	8.9999
:::	chr19:49684511-49684747(+)$1	236	11	14	8.9999
fff	chr18:32914652-32914898(-)$1	246	79	82	8.9999
))e	chr18:54281564-54281852(-)$1	288	40	43	8.9999
:::	chr7:92087017-92087277(+)$1	260	6	9	8.9999
ppp	chr8:134249476-134249791(-)$1	315	192	195	8.9999
DDK	chr2:74331042-74331298(+)$1	256	4	7	8.9999
EEE	chr1:249143295-249143585(+)$1	290	52	55	8.9999
::e	chr11:118923311-118923530(-)$1	219	17	20	8.9999
###	chr18:43669719-43670015(-)$1	296	28	31	8.9999
ddd	chr2:69053579-69053827(+)$1	248	166	169	8.9999
fff	chr20:56073077-56073415(-)$1	338	3	6	8.9999
LLD	chr7:98992548-98992801(-)$1	253	119	122	8.9999
dbb	chr12:46754799-46755069(-)$1	270	20	23	8.9999
bb[	chr15:41059682-41059953(+)$1	271	8	11	8.9999
3ee	chr1:156712917-156713157(-)$1	240	68	71	8.9999
nee	chr22:36872680-36872977(-)$1	297	23	26	8.9999
[ee	chr8:41479105-41479423(+)$1	318	30	33	8.9999
ddd	chr15:58287174-58287426(-)$1	252	72	75	8.9999
ooo	chr11:63743700-63743945(+)$1	245	151	154	8.9999
{EE	chr19:36728985-36729239(+)$1	254	28	31	8.9999
CC{	chr1:27180773-27181022(+)$1	249	1	4	8.9999
ccc	chr1:156436623-156436914(-)$1	291	21	24	8.9999
hhs	chr1:40206963-40207181(+)$1	218	158	161	8.9999
EEE	chr10:75882200-75882455(-)$1	255	60	63	8.9999
ooo	chr4:13485777-13486061(-)$1	284	121	124	8.9999
ddp	chr6:7289455-7289671(-)$1	216	23	26	8.9999
ZEE	chr1:36769675-36769888(+)$1	213	130	133	8.9999
nnc	chr11:32608538-32608791(+)$1	253	92	95	8.9999
pcc	chr6:33240391-33240597(+)$1	206	71	74	8.9999
'''	chr2:97525736-97525973(-)$1	237	34	37	8.9999
:ee	chr2:87003934-87004215(+)$1	281	57	60	8.9999
FFF	chrX:138810302-138810592(-)$1	290	8	11	8.9999
GGE	chr2:38545958-38546236(-)$1	278	5	8	8.9999
:CC	chr18:55230007-55230283(-)$1	276	38	41	8.9999
::=	chr17:37009221-37009431(-)$1	210	1	4	8.9999
emm	chr16:70588337-70588600(+)$1	263	11	14	8.9999
33d	chr1:31732770-31733016(-)$1	246	80	83	8.9999

#DB
..(	chr11:47800419-47800641(-)$1	1	85	88	8.9999
.))	chr15:65869205-65869421(+)$1	1	144	147	8.9999
((.	chr17:3572805-3573048(+)$1	1	33	36	8.9999
((.	chr20:34237418-34237671(-)$1	1	38	41	8.9999
(((	chr19:2428916-2429210(-)$1	1	66	69	8.9999
.))	chr15:93570518-93570797(+)$1	1	87	90	8.9999
)))	chr3:152180592-152180855(+)$1	1	48	51	8.9999
(.(	chr12:123899870-123900136(-)$1	1	36	39	8.9999
..(	chr17:57812637-57812924(+)$1	1	18	21	8.9999
.((	chr17:26522116-26522343(+)$1	1	24	27	8.9999
(((	chr2:220078758-220079008(-)$1	1	3	6	8.9999
(((	chr2:37430586-37430857(+)$1	1	98	101	8.9999
...	chr8:37707138-37707431(-)$1	1	130	133	8.9999
(.(	chr1:150547869-150548081(-)$1	1	102	105	8.9999
.))	chr3:49137907-49138116(-)$1	1	16	19	8.9999
.((	chr9:115447017-115447321(-)$1	1	87	90	8.9999
..(	chr12:54626736-54626953(-)$1	1	40	43	8.9999
(((	chr19:6368559-6368814(+)$1	1	15	18	8.9999
(.(	chr11:71808391-71808714(-)$1	1	57	60	8.9999
...	chr10:98984468-98984745(-)$1	1	1	4	8.9999
(.(	chr12:56538152-56538391(+)$1	1	43	46	8.9999
.(.	chr3:127337925-127338216(+)$1	1	23	26	8.9999
...	chr19:51835517-51835782(-)$1	1	39	42	8.9999
..(	chr3:39437857-39438174(+)$1	1	35	38	8.9999
.((	chr11:64854689-64854912(+)$1	1	0	3	8.9999
(((	chr11:62327148-62327351(-)$1	1	21	24	8.9999
(((	chr6:10756815-10757093(+)$1	1	126	129	8.9999
(((	chr17:29664735-29664944(+)$1	1	21	24	8.9999
...	chr10:76940210-76940422(+)$1	1	143	146	8.9999
.((	chr3:138430953-138431168(-)$1	1	3	6	8.9999
)).	chr16:1872765-1873130(-)$1	1	160	163	8.9999
.))	chr6:13316767-13317039(-)$1	1	45	48	8.9999
)))	chr18:33749924-33750173(+)$1	1	30	33	8.9999
...	chr22:19384207-19384472(-)$1	1	51	54	8.9999
...	chr14:96010485-96010772(+)$1	1	16	19	8.9999
.((	chr1:26612269-26612572(-)$1	1	203	206	8.9999
.((	chr8:99054772-99054974(-)$1	1	55	58	8.9999
)))	chr9:75766689-75766943(+)$1	1	210	213	8.9999
(((	chr3:45721398-45721651(+)$1	1	9	12	8.9999
.((	chr12:120636255-120636458(-)$1	1	34	37	8.9999
(((	chr5:167932923-167933157(+)$1	1	34	37	8.9999
(.(	chr11:67938381-67938658(-)$1	1	66	69	8.9999
...	chr14:23421455-23421764(-)$1	1	98	101	8.9999
...	chr1:55230033-55230242(-)$1	1	161	164	8.9999
.((	chr3:176738616-176738883(-)$1	1	53	56	8.9999
)))	chr9:37439189-37439446(-)$1	1	49	52	8.9999
.((	chr1:15755811-15756068(+)$1	1	44	47	8.9999
..(	chr2:96850575-96850827(-)$1	1	23	26	8.9999
(((	chr3:10342626-10342855(-)$1	1	36	39	8.9999
)))	chr18:19449441-19449691(+)$1	1	58	61	8.9999
...	chr3:12940283-12940569(-)$1	1	94	97	8.9999
.).	chr1:9908999-9909249(-)$1	1	103	106	8.9999
.((	chr17:47905457-47905733(+)$1	1	22	25	8.9999
..(	chr2:26413940-26414155(-)$1	1	2	5	8.9999
.((	chr17:47005838-47006092(+)$1	1	24	27	8.9999
...	chr8:17141963-17142217(+)$1	1	64	67	8.9999
.((	chr6:150047596-150047900(-)$1	1	11	14	8.9999
.(.	chr16:71961906-71962152(+)$1	1	91	94	8.9999
((.	chr20:34241492-34241753(-)$1	1	36	39	8.9999
(((	chr1:228682524-228682755(+)$1	1	37	40	8.9999
...	chr19:49684511-49684747(+)$1	1	11	14	8.9999
(((	chr18:32914652-32914898(-)$1	1	79	82	8.9999
..(	chr18:54281564-54281852(-)$1	1	40	43	8.9999
...	chr7:92087017-92087277(+)$1	1	6	9	8.9999
...	chr8:134249476-134249791(-)$1	1	192	195	8.9999
((.	chr2:74331042-74331298(+)$1	1	4	7	8.9999
(((	chr1:249143295-249143585(+)$1	1	52	55	8.9999
..(	chr11:118923311-118923530(-)$1	1	17	20	8.9999
...	chr18:43669719-43670015(-)$1	1	28	31	8.9999
(((	chr2:69053579-69053827(+)$1	1	166	169	8.9999
(((	chr20:56073077-56073415(-)$1	1	3	6	8.9999
..(	chr7:98992548-98992801(-)$1	1	119	122	8.9999
(((	chr12:46754799-46755069(-)$1	1	20	23	8.9999
((.	chr15:41059682-41059953(+)$1	1	8	11	8.9999
.))	chr1:156712917-156713157(-)$1	1	68	71	8.9999
.))	chr22:36872680-36872977(-)$1	1	23	26	8.9999
.((	chr8:41479105-41479423(+)$1	1	30	33	8.9999
)))	chr15:58287174-58287426(-)$1	1	72	75	8.9999
...	chr11:63743700-63743945(+)$1	1	151	154	8.9999
.((	chr19:36728985-36729239(+)$1	1	28	31	8.9999
((.	chr1:27180773-27181022(+)$1	1	1	4	8.9999
(((	chr1:156436623-156436914(-)$1	1	21	24	8.9999
((.	chr1:40206963-40207181(+)$1	1	158	161	8.9999
(((	chr10:75882200-75882455(-)$1	1	60	63	8.9999
...	chr4:13485777-13486061(-)$1	1	121	124	8.9999
((.	chr6:7289455-7289671(-)$1	1	23	26	8.9999
.))	chr1:36769675-36769888(+)$1	1	130	133	8.9999
..)	chr11:32608538-32608791(+)$1	1	92	95	8.9999
.))	chr6:33240391-33240597(+)$1	1	71	74	8.9999
...	chr2:97525736-97525973(-)$1	1	34	37	8.9999
.((	chr2:87003934-87004215(+)$1	1	57	60	8.9999
(((	chrX:138810302-138810592(-)$1	1	8	11	8.9999
(((	chr2:38545958-38546236(-)$1	1	5	8	8.9999
.((	chr18:55230007-55230283(-)$1	1	38	41	8.9999
..(	chr17:37009221-37009431(-)$1	1	1	4	8.9999
(..	chr16:70588337-70588600(+)$1	1	11	14	8.9999
..)	chr1:31732770-31733016(-)$1	1	80	83	8.9999

#PSSM
A : 0.97	a : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_UTR_m1_run2.nuc.txt

#NT
CGCGCCACCGCCGCCGCC	chr10:17271244-17271509(+)$1	265	134	152	35.4285
gccgccgccgccgccgcc	chr1:32403543-32403846(-)$1	303	82	100	44.0000
gccgccgccgccgccgcc	chr20:57466603-57466870(+)$1	267	160	178	44.0000
gcccccuccgccgccgcc	chr2:70314566-70314898(+)$1	332	120	138	37.2857
cgcgccgccgccgccacc	chr16:58231517-58231871(-)$1	354	177	195	34.2857
gccgccgccgccgccgcc	chrX:152953540-152953801(+)$1	261	185	203	44.0000
CCCUCCGCCGCCGCCGCC	chr6:53213554-53213819(-)$1	265	146	164	38.5714
gccgccgccaccgccucc	chr12:120972416-120972682(+)$1	266	219	237	36.2857
GCCGCCGCCCCUACCGCC	chr22:21272027-21272359(+)$1	332	155	173	32.0000
GCCACCGCCGCCGCCGCC	chr17:39845042-39845364(+)$1	322	189	207	40.5714
gccgccgccgccgccgcc	chrX:152953601-152953886(+)$1	285	124	142	44.0000
gacgccgccgccaccgcc	chr6:37787506-37787819(+)$1	313	126	144	36.2857
UCCGCCGCCUCCGCCGCA	chr11:809866-810124(+)$1	258	144	162	34.2857
gccgccgccgccgccgcc	chrX:152953477-152953693(+)$1	216	9	27	44.0000
UCCGCCGUCGUCGCCGCC	chr19:3985275-3985512(-)$1	237	55	73	33.0000
UCCGCCGUCGUCGCCGCC	chr19:3985312-3985559(-)$1	247	102	120	33.0000
gccaccgccgccgccgcc	chr7:6523601-6523898(-)$1	297	192	210	40.5714
CGCGCCACCGCCGCCGCC	chr10:17271178-17271433(+)$1	255	200	218	35.4285
CCCCCCUCCGCCCCCGCC	chr9:100745555-100745887(+)$1	332	226	244	31.7142
cccgccgcccgcgccgcc	chr11:2398561-2398877(+)$1	316	200	218	34.5714
gccgaggccgccgccgcc	chr19:1241671-1242017(+)$1	346	244	262	34.7142
UCCGCCGCCUCCGCCGCA	chr11:809924-810140(+)$1	216	86	104	34.2857
gccgcagccgccuccgcc	chr2:232573166-232573418(+)$1	252	127	145	35.4285
CCCGCCUCCUGCGCCGCC	chr16:30077030-30077350(+)$1	320	51	69	31.4285
gccaccgccgccgccgcc	chr11:61734777-61735183(-)$1	406	248	266	40.5714
gccgccgccgccgccgcc	chr20:57466518-57466792(+)$1	274	245	263	44.0000
gucgccgccgccgccgcc	chr12:6875608-6875935(+)$1	327	141	159	40.1428
gccgccgccgcccgcgcc	chr20:49547417-49547704(-)$1	287	36	54	35.5714
gccgcccgcaccgccgcc	chr17:80055905-80056199(-)$1	294	171	189	32.7142
GGCGCCGCCACCGCCGCA	chr1:156721115-156721397(-)$1	282	95	113	33.7142
GGCGCCGCCACCGCCGCA	chr1:156721254-156721539(-)$1	285	237	255	33.7142
CCCUCCUCCGCCGCCGGC	chr17:49243664-49243956(+)$1	292	102	120	30.5714
gccgccgccgccgccgcc	chr19:6424621-6424892(-)$1	271	116	134	44.0000
gccgccaccgccgccgcc	chr1:26798903-26799202(+)$1	299	253	271	40.5714

#otherMatches

#Struct PSSM
b::::CCCCCCHHHHHHH	chr11:64001965-64002310(+)$1	345	75	93	35.0000
3dddd::::GGGGGGG::	chr10:17271244-17271509(+)$1	265	134	152	35.4285
hhhhhhhh]bb::bb[bb	chr1:32403543-32403846(-)$1	303	82	100	44.0000
cc]dddd22bba[bb###	chr20:57466603-57466870(+)$1	267	160	178	44.0000
bb7777777bb4444a]c	chr2:70314566-70314898(+)$1	332	120	138	37.2857
]ccc22ggggggg:::::	chr16:58231517-58231871(-)$1	354	177	195	34.2857
CCCZZZCCCYYDDDD}BB	chrX:152953540-152953801(+)$1	261	185	203	44.0000
DDDLLLBB{BB{BB{EEE	chr6:53213554-53213819(-)$1	265	146	164	38.5714
b!!bbpppppppbb333b	chr12:120972416-120972682(+)$1	266	219	237	36.2857
bb[bb[aooooooa]bb]	chr22:21272027-21272359(+)$1	332	155	173	32.0000
:BB{DDDD{CCC{FFFFF	chr17:39845042-39845364(+)$1	322	189	207	40.5714
cccdddd!!bb[bbmmmm	chrX:152953601-152953886(+)$1	285	124	142	44.0000
BB{EEEEE:ccc[ddddb	chr6:37787506-37787819(+)$1	313	126	144	36.2857
::::DDDD{CCC{DDDD{	chr11:809866-810124(+)$1	258	144	162	34.2857
{CCC::bb[bb[bb[bbm	chrX:152953477-152953693(+)$1	216	9	27	44.0000
qqccc]a]eeeee]cccb	chr19:3985275-3985512(-)$1	237	55	73	33.0000
:::bb[dddd[eeeeepp	chr19:3985312-3985559(-)$1	247	102	120	33.0000
::::::FFFFFFdddd##	chr7:6523601-6523898(-)$1	297	192	210	40.5714
cccDDDDBB}A}EEEEE:	chr10:17271178-17271433(+)$1	255	200	218	35.4285
ffffffeeeeeppppppp	chr9:100745555-100745887(+)$1	332	226	244	31.7142
:::ccc!!dddd[bbooo	chr11:2398561-2398877(+)$1	316	200	218	34.5714
ccceeeee[bb[ddddll	chr19:1241671-1242017(+)$1	346	244	262	34.7142
::::DDDD{CCC{DDDD{	chr11:809924-810140(+)$1	216	86	104	34.2857
DDDbb[dddd!!eeeee[	chr2:232573166-232573418(+)$1	252	127	145	35.4285
:::FFFFFF::ddddhhh	chr16:30077030-30077350(+)$1	320	51	69	31.4285
bbmmmmbb]bb::::bb[	chr11:61734777-61735183(-)$1	406	248	266	40.5714
bbmmmmbb]a]ccc]ccc	chr20:57466518-57466792(+)$1	274	245	263	44.0000
D{BB::eeeee[dddd!!	chr12:6875608-6875935(+)$1	327	141	159	40.1428
eeeeeee[bbmmmmbb]e	chr20:49547417-49547704(-)$1	287	36	54	35.5714
dd[ffffff[bb[a[ddd	chr17:80055905-80056199(-)$1	294	171	189	32.7142
ffffpppppppffffff:	chr1:156721115-156721397(-)$1	282	95	113	33.7142
ffffeeeee]ahhhhhhh	chr1:156721254-156721539(-)$1	285	237	255	33.7142
iiii"""eeeeeeeeee"	chr17:49243664-49243956(+)$1	292	102	120	30.5714
eeeee::IIIIIIIII}A	chr19:6424621-6424892(-)$1	271	116	134	44.0000
FFDDDD}IIIIIIIII:c	chr1:26798903-26799202(+)$1	299	253	271	40.5714

#DB
)....)))))))))))))	chr11:64001965-64002310(+)$1	1	75	93	35.0000
.))))....(((((((..	chr10:17271244-17271509(+)$1	1	134	152	35.4285
)))))))).))..((.((	chr1:32403543-32403846(-)$1	1	82	100	44.0000
)).))))..))(.((...	chr20:57466603-57466870(+)$1	1	160	178	44.0000
)).......))....).)	chr2:70314566-70314898(+)$1	1	120	138	37.2857
.)))..))))))).....	chr16:58231517-58231871(-)$1	1	177	195	34.2857
)))...)))..)))).))	chrX:152953540-152953801(+)$1	1	185	203	44.0000
(((...((.((.((.(((	chr6:53213554-53213819(-)$1	1	146	164	38.5714
(..((.......))...)	chr12:120972416-120972682(+)$1	1	219	237	36.2857
((.((.(......).)).	chr22:21272027-21272359(+)$1	1	155	173	32.0000
.((.((((.(((.(((((	chr17:39845042-39845364(+)$1	1	189	207	40.5714
(((((((..((.((....	chrX:152953601-152953886(+)$1	1	124	142	44.0000
((.(((((.(((.(((((	chr6:37787506-37787819(+)$1	1	126	144	36.2857
....((((.(((.((((.	chr11:809866-810124(+)$1	1	144	162	34.2857
.(((..((.((.((.((.	chrX:152953477-152953693(+)$1	1	9	27	44.0000
..))).).))))).))))	chr19:3985275-3985512(-)$1	1	55	73	33.0000
...((.((((.(((((..	chr19:3985312-3985559(-)$1	1	102	120	33.0000
......((((((((((..	chr7:6523601-6523898(-)$1	1	192	210	40.5714
))))))))).).))))).	chr10:17271178-17271433(+)$1	1	200	218	35.4285
(((((((((((.......	chr9:100745555-100745887(+)$1	1	226	244	31.7142
...(((..((((.((...	chr11:2398561-2398877(+)$1	1	200	218	34.5714
((((((((.((.((((..	chr19:1241671-1242017(+)$1	1	244	262	34.7142
....((((.(((.((((.	chr11:809924-810140(+)$1	1	86	104	34.2857
(((((.((((..(((((.	chr2:232573166-232573418(+)$1	1	127	145	35.4285
...((((((..(((((((	chr16:30077030-30077350(+)$1	1	51	69	31.4285
((....)).))....((.	chr11:61734777-61735183(-)$1	1	248	266	40.5714
((....)).).))).)))	chr20:57466518-57466792(+)$1	1	245	263	44.0000
(.((..(((((.((((..	chr12:6875608-6875935(+)$1	1	141	159	40.1428
(((((((.((....)).)	chr20:49547417-49547704(-)$1	1	36	54	35.5714
((.((((((.((.(.(((	chr17:80055905-80056199(-)$1	1	171	189	32.7142
((((.......)))))).	chr1:156721115-156721397(-)$1	1	95	113	33.7142
))))))))).))))))))	chr1:156721254-156721539(-)$1	1	237	255	33.7142
((((...((((((((((.	chr17:49243664-49243956(+)$1	1	102	120	30.5714
)))))..))))))))).)	chr19:6424621-6424892(-)$1	1	116	134	44.0000
)))))).))))))))).(	chr1:26798903-26799202(+)$1	1	253	271	40.5714

#PSSM
g : 0.51	C : 0.17	G : 0.11	U : 0.11	c : 0.08	
c : 0.51	C : 0.28	G : 0.11	g : 0.02	a : 0.02	u : 0.02	
c : 0.60	C : 0.40	
g : 0.48	G : 0.28	c : 0.05	U : 0.05	a : 0.05	A : 0.02	C : 0.02	
c : 0.57	C : 0.40	a : 0.02	
c : 0.54	C : 0.40	g : 0.02	a : 0.02	
g : 0.51	G : 0.25	U : 0.08	A : 0.05	u : 0.02	c : 0.02	a : 0.02	
c : 0.57	C : 0.34	U : 0.05	g : 0.02	
c : 0.60	C : 0.40	
g : 0.51	G : 0.22	U : 0.08	a : 0.05	A : 0.05	C : 0.02	c : 0.02	
c : 0.57	C : 0.31	U : 0.05	g : 0.02	G : 0.02	
c : 0.60	C : 0.37	U : 0.02	
g : 0.48	G : 0.34	c : 0.05	A : 0.02	a : 0.02	C : 0.02	u : 0.02	
c : 0.57	C : 0.40	g : 0.02	
c : 0.60	C : 0.40	
g : 0.54	G : 0.40	a : 0.02	u : 0.02	
c : 0.60	C : 0.37	G : 0.02	
c : 0.60	C : 0.28	A : 0.11	

#score	1299.7142857142865
#seq	35
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_CDS_m3_run2.nuc.txt

#NT
augaagaugaagaagaagau	chr13:31035388-31035658(-)$1	270	130	150	36.2244
augaugaggaugaggaagaa	chr11:129992098-129992328(+)$1	230	157	177	30.0000
AUGGAGAGGAAGAAGAUGAC	chr1:150192947-150193165(-)$1	218	150	170	28.7755
aggaggaagaagaagaagag	chr6:31857144-31857446(-)$1	302	119	139	35.5102
aaaaagacgaagaaaaauaa	chr19:15366773-15367023(-)$1	250	108	128	25.3061
aggaagaagaagaagaggag	chr17:4575257-4575595(-)$1	338	137	157	34.7959
AUGGAGAGGAAGAAGAUGAC	chr1:150192897-150193147(-)$1	250	132	152	28.7755
aagaaaaagaauaaaaagaa	chr14:56078636-56078964(+)$1	328	304	324	28.5714
augaagaagaagaagaagag	chr2:27606717-27606955(-)$1	238	84	104	39.2857
AUGAAGAACUGGAGGAAGAG	chr17:27003165-27003429(+)$1	264	83	103	24.8979
AUGGAGAUGAAGAUGAGGAA	chr2:232577052-232577316(+)$1	264	112	132	28.4693
AGGAAGAAAAAGAGGAAGAA	chr11:58377260-58377533(+)$1	273	48	68	33.7755
GUCAAGAACAAGAACAAGAA	chr17:77808500-77808758(-)$1	258	74	94	25.1020
AAGAAAAAGAAGAGUUAGAA	chr2:99978053-99978328(+)$1	275	71	91	25.8163
AUGAAAAUGAAAUGGAAGAA	chr5:34938916-34939215(+)$1	299	153	173	25.1020
AUCAAGGAGAAAAAGAAAAA	chr1:94341100-94341363(-)$1	263	139	159	24.4897
UUgaggaagaaaaagaagag	chr1:94341723-94341981(-)$1	258	37	57	28.8775
augaagaggaugaggaagau	chr1:186295153-186295446(-)$1	293	83	103	30.8163
augaagaagaagaaACAGCA	chr12:104341061-104341308(+)$1	247	124	144	28.9795
augaagaagaagaagaagag	chr2:27606755-27607011(-)$1	256	140	160	39.2857
aagaggaagaaggagaagca	chr3:184039713-184039955(+)$1	242	43	63	28.1632
aggaggaagaagcagaagag	chr8:17815014-17815307(+)$1	293	100	120	31.1224
AAGAAGUAGAAGAAGAUGAA	chr12:104333188-104333495(+)$1	307	165	185	31.7346
AUUACGAUGAAGAGGAAGAG	chr19:14523853-14524110(-)$1	257	112	132	27.6530
AGGAGGAAGAAGAGGAAAAA	chr3:196214183-196214493(-)$1	310	120	140	31.3265
augaugaggaugaggaagaa	chr11:129992153-129992488(+)$1	335	102	122	30.0000
AGGAGGAUGAAGUUGAAGAG	chr6:159190261-159190476(-)$1	215	87	107	26.1224
augaagaugaagaagaggau	chr2:232325441-232325677(-)$1	236	190	210	32.8571
GGGAAGAAGAAGAAACAGAA	chr19:10261973-10262290(-)$1	317	160	180	28.5714
AAUAAAAAGAAGAAGAAGAA	chr17:34942398-34942711(+)$1	313	182	202	31.9387
aggaagaagaagaugaagaa	chr2:99992863-99993129(+)$1	266	12	32	37.1428
augaugaaggagaagaugau	chr9:100777549-100777782(+)$1	233	141	161	28.0612
aaaaagaagaaaaagaagaa	chr21:34921820-34922066(+)$1	246	65	85	32.0408
UUGAAAAAGAACAAGAACAG	chr1:171501549-171501878(+)$1	329	239	259	22.9591
AAGCAGACGUAGAGGAAGAA	chr10:129902796-129903057(-)$1	261	50	70	26.5306
AUGGAGAUGAAGAUGAGGAG	chr16:15095531-15095805(+)$1	274	148	168	26.7346
aGCAAGAAGAAGAAGAAGGA	chr1:29475196-29475422(-)$1	226	186	206	31.4285
aagaagaagaaaaagaagaa	chr12:95876888-95877157(+)$1	269	134	154	35.9183
aggaagaagaggaagaagaa	chr2:99992804-99993048(+)$1	244	62	82	35.9183
aggaagaaagagaaaaagaa	chr17:48823150-48823461(+)$1	311	63	83	28.1632
GCGCGGAGGAAGAAGAAGAA	chr12:124862692-124862950(-)$1	258	35	55	25.8163
AAGAAGAGGAAGAGGAAGAA	chr11:65830855-65831113(+)$1	258	88	108	35.7142
AGGAAAAAGAAGAGGAAAAA	chr1:25554508-25554763(-)$1	255	115	135	30.2040
CUAAAGAAGAAGUGAAAGAA	chr10:32319949-32320231(-)$1	282	100	120	24.0816
aggaggaggaggaggaagaU	chr11:67018024-67018281(+)$1	257	58	78	26.9387
AUGAAGAAGAUGAAGAUGAG	chr9:100774632-100774854(+)$1	222	89	109	32.1428
augaugaaggagaagaugau	chr9:100777582-100777870(+)$1	288	108	128	28.0612
gugaagaggaagaaagagaa	chr1:226349130-226349443(-)$1	313	79	99	27.3469

#otherMatches

#Struct PSSM
d]dddd22==========::	chr6:33170241-33170482(+)$1	241	122	142	26.5306
ffff####============	chr13:31035388-31035658(-)$1	270	130	150	36.2244
dd::::EEEEE}JJJJJJJJ	chr11:129992098-129992328(+)$1	230	157	177	30.0000
fffffeeeeeddddcccooo	chr1:150192947-150193165(-)$1	218	150	170	28.7755
ccc88888888bb55555dd	chr6:31857144-31857446(-)$1	302	119	139	35.5102
:::::ffffff+++++++++	chr19:15366773-15367023(-)$1	250	108	128	25.3061
{BBVVVVVVVVVVVVVEEEE	chr17:4575257-4575595(-)$1	338	137	157	34.7959
fffffeeeee:ggggggg##	chr1:150192897-150193147(-)$1	250	132	152	28.7755
YYCCC}HHHHHHHH}DDDD:	chr14:56078636-56078964(+)$1	328	304	324	28.5714
::::::::::::::::::::	chr2:27606717-27606955(-)$1	238	84	104	39.2857
2a]ccc666666bb22eeee	chr17:27003165-27003429(+)$1	264	83	103	24.8979
ggFFFFFF?????GGGGGGG	chr2:232577052-232577316(+)$1	264	112	132	28.4693
ccc''''''''dddd[dddd	chr11:58377260-58377533(+)$1	273	48	68	33.7755
ccc:::::::::::::::::	chr17:77808500-77808758(-)$1	258	74	94	25.1020
::::::::::::ccc####e	chr2:99978053-99978328(+)$1	275	71	91	25.8163
FF:::::::::cccoooooo	chr5:34938916-34939215(+)$1	299	153	173	25.1020
FFF}CCC}JJJJJJJJJJ::	chr1:94341100-94341363(-)$1	263	139	159	24.4897
::IIIIIIIIINNNNNBBFF	chr1:94341723-94341981(-)$1	258	37	57	28.8775
ffffffffffff]bb:::bb	chr1:186295153-186295446(-)$1	293	83	103	30.8163
"ffffff[accc!!ccc$$$	chr12:104341061-104341308(+)$1	247	124	144	28.9795
::::::::::::::::::::	chr2:27606755-27607011(-)$1	256	140	160	39.2857
::::::::::::::::::bb	chr3:184039713-184039955(+)$1	242	43	63	28.1632
$$bb''''''''aooooooa	chr8:17815014-17815307(+)$1	293	100	120	31.1224
:::::::::::hhhhhhhh^	chr12:104333188-104333495(+)$1	307	165	185	31.7346
:::::::::::eeeee"""c	chr19:14523853-14524110(-)$1	257	112	132	27.6530
!a^^^^^^^^^^^^^^^^^^	chr3:196214183-196214493(-)$1	310	120	140	31.3265
dd::::EEEEE}JJJJJJJJ	chr11:129992153-129992488(+)$1	335	102	122	30.0000
ffffff:::::ddddqqqqq	chr6:159190261-159190476(-)$1	215	87	107	26.1224
:::::DDDDYYJJJJJJJJJ	chr2:232325441-232325677(-)$1	236	190	210	32.8571
ccbb>>>>>>>>>>>>>>>>	chr19:10261973-10262290(-)$1	317	160	180	28.5714
::::::::dddd"""eeeee	chr17:34942398-34942711(+)$1	313	182	202	31.9387
::::::::::::::::::::	chr2:99992863-99993129(+)$1	266	12	32	37.1428
cc[bbssssssssssbb]cc	chr9:100777549-100777782(+)$1	233	141	161	28.0612
::::::::::::::::::::	chr21:34921820-34922066(+)$1	246	65	85	32.0408
dddqqqqqqqqdddd:::::	chr1:171501549-171501878(+)$1	329	239	259	22.9591
:::::::::::cccxxxxxx	chr10:129902796-129903057(-)$1	261	50	70	26.5306
ggg[a!!ffffff[gggggg	chr16:15095531-15095805(+)$1	274	148	168	26.7346
qbb:::::::::::::::::	chr1:29475196-29475422(-)$1	226	186	206	31.4285
mbb:::::::::::::::::	chr12:95876888-95877157(+)$1	269	134	154	35.9183
::::::::::::::::::::	chr2:99992804-99993048(+)$1	244	62	82	35.9183
::::::::::::::::::::	chr17:48823150-48823461(+)$1	311	63	83	28.1632
ffffff]eeeee]bb:::::	chr12:124862692-124862950(-)$1	258	35	55	25.8163
pppppeeeee:FFFFFFKKD	chr11:65830855-65831113(+)$1	258	88	108	35.7142
GGGGGG::::::::eeeee[	chr1:25554508-25554763(-)$1	255	115	135	30.2040
:JJJJJJJJJJJEEEEELLL	chr10:32319949-32320231(-)$1	282	100	120	24.0816
:bb!!dddd[bb[ggggggg	chr11:67018024-67018281(+)$1	257	58	78	26.9387
2ggggggg:::::FFFFFFE	chr9:100774632-100774854(+)$1	222	89	109	32.1428
::::bb[ccc"""a!!bbss	chr9:100777582-100777870(+)$1	288	108	128	28.0612
cczzzzzzzzzzzzzzzzzc	chr1:226349130-226349443(-)$1	313	79	99	27.3469

#DB
).))))..))))))))))..	chr6:33170241-33170482(+)$1	1	122	142	26.5306
((((....((((((((((((	chr13:31035388-31035658(-)$1	1	130	150	36.2244
))....))))).))))))))	chr11:129992098-129992328(+)$1	1	157	177	30.0000
))))))))))(((((((...	chr1:150192947-150193165(-)$1	1	150	170	28.7755
)))........)).....))	chr6:31857144-31857446(-)$1	1	119	139	35.5102
.....((((((.........	chr19:15366773-15367023(-)$1	1	108	128	25.3061
.((.............((((	chr17:4575257-4575595(-)$1	1	137	157	34.7959
)))))))))).(((((((..	chr1:150192897-150193147(-)$1	1	132	152	28.7755
..))).)))))))).)))).	chr14:56078636-56078964(+)$1	1	304	324	28.5714
....................	chr2:27606717-27606955(-)$1	1	84	104	39.2857
.).)))......))..))))	chr17:27003165-27003429(+)$1	1	83	103	24.8979
)))))))).....)))))))	chr2:232577052-232577316(+)$1	1	112	132	28.4693
(((........((((.((((	chr11:58377260-58377533(+)$1	1	48	68	33.7755
))).................	chr17:77808500-77808758(-)$1	1	74	94	25.1020
............(((....(	chr2:99978053-99978328(+)$1	1	71	91	25.8163
((.........(((......	chr5:34938916-34939215(+)$1	1	153	173	25.1020
))).))).))))))))))..	chr1:94341100-94341363(-)$1	1	139	159	24.4897
..(((((((((.....((((	chr1:94341723-94341981(-)$1	1	37	57	28.8775
)))))))))))).))...((	chr1:186295153-186295446(-)$1	1	83	103	30.8163
.((((((.((((..(((...	chr12:104341061-104341308(+)$1	1	124	144	28.9795
....................	chr2:27606755-27607011(-)$1	1	140	160	39.2857
..................((	chr3:184039713-184039955(+)$1	1	43	63	28.1632
..((........(......)	chr8:17815014-17815307(+)$1	1	100	120	31.1224
...........((((((((.	chr12:104333188-104333495(+)$1	1	165	185	31.7346
...........(((((...(	chr19:14523853-14524110(-)$1	1	112	132	27.6530
.(..................	chr3:196214183-196214493(-)$1	1	120	140	31.3265
))....))))).))))))))	chr11:129992153-129992488(+)$1	1	102	122	30.0000
)))))).....((((.....	chr6:159190261-159190476(-)$1	1	87	107	26.1224
.....))))..)))))))))	chr2:232325441-232325677(-)$1	1	190	210	32.8571
))))................	chr19:10261973-10262290(-)$1	1	160	180	28.5714
........((((...(((((	chr17:34942398-34942711(+)$1	1	182	202	31.9387
....................	chr2:99992863-99993129(+)$1	1	12	32	37.1428
((.((..........)).))	chr9:100777549-100777782(+)$1	1	141	161	28.0612
....................	chr21:34921820-34922066(+)$1	1	65	85	32.0408
(((........)))).....	chr1:171501549-171501878(+)$1	1	239	259	22.9591
...........(((......	chr10:129902796-129903057(-)$1	1	50	70	26.5306
(((.(..((((((.((((((	chr16:15095531-15095805(+)$1	1	148	168	26.7346
.)).................	chr1:29475196-29475422(-)$1	1	186	206	31.4285
.)).................	chr12:95876888-95877157(+)$1	1	134	154	35.9183
....................	chr2:99992804-99993048(+)$1	1	62	82	35.9183
....................	chr17:48823150-48823461(+)$1	1	63	83	28.1632
)))))).))))).)).....	chr12:124862692-124862950(-)$1	1	35	55	25.8163
.....))))).((((((..(	chr11:65830855-65831113(+)$1	1	88	108	35.7142
((((((........(((((.	chr1:25554508-25554763(-)$1	1	115	135	30.2040
.((((((((((((((((...	chr10:32319949-32320231(-)$1	1	100	120	24.0816
.((..((((.((.(((((((	chr11:67018024-67018281(+)$1	1	58	78	26.9387
.))))))).....(((((((	chr9:100774632-100774854(+)$1	1	89	109	32.1428
....((.(((...(..((..	chr9:100777582-100777870(+)$1	1	108	128	28.0612
((.................)	chr1:226349130-226349443(-)$1	1	79	99	27.3469

#PSSM
a : 0.46	A : 0.36	G : 0.06	C : 0.04	U : 0.04	g : 0.02	
U : 0.26	u : 0.22	g : 0.14	A : 0.12	G : 0.12	a : 0.10	C : 0.02	
g : 0.44	G : 0.38	C : 0.06	a : 0.04	U : 0.04	A : 0.02	
a : 0.48	A : 0.38	G : 0.08	C : 0.04	
A : 0.40	a : 0.30	g : 0.10	G : 0.08	u : 0.08	C : 0.02	
g : 0.46	G : 0.40	A : 0.10	a : 0.02	
a : 0.48	A : 0.46	G : 0.02	U : 0.02	
a : 0.32	A : 0.30	g : 0.10	U : 0.10	G : 0.08	u : 0.04	c : 0.02	C : 0.02	
g : 0.46	G : 0.44	C : 0.04	A : 0.02	a : 0.02	
A : 0.46	a : 0.42	g : 0.06	U : 0.04	
A : 0.46	a : 0.38	u : 0.06	g : 0.04	G : 0.02	U : 0.02	
G : 0.44	g : 0.40	a : 0.06	A : 0.04	u : 0.02	C : 0.02	
A : 0.44	a : 0.44	U : 0.06	g : 0.02	c : 0.02	
a : 0.38	A : 0.24	G : 0.20	g : 0.08	U : 0.06	u : 0.02	
G : 0.40	g : 0.38	A : 0.08	a : 0.08	C : 0.02	U : 0.02	
A : 0.46	a : 0.44	C : 0.04	U : 0.02	g : 0.02	
a : 0.38	A : 0.38	U : 0.08	G : 0.06	g : 0.04	u : 0.04	
G : 0.44	g : 0.44	A : 0.06	u : 0.02	C : 0.02	
A : 0.48	a : 0.44	C : 0.02	c : 0.02	G : 0.02	
A : 0.36	a : 0.22	g : 0.12	G : 0.12	u : 0.10	C : 0.04	U : 0.02	

#score	1464.081632653061
#seq	49
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_transcript_m1_run2.nuc.txt

#NT
gggcgggggguugga	chr5:180709223-180709466(+)$1	243	14	29	20.8653
GGGAGGUGGGCGGGA	chr19:4053078-4053291(-)$1	213	112	127	22.9807
aggaggggggcaggu	chr19:5131549-5131805(+)$1	256	32	47	22.4999
GGGGGUGGGGCAGGG	chr11:404655-404968(+)$1	313	115	130	23.7499
gggaaggggggaggg	chr1:44337857-44338165(+)$1	308	72	87	24.3269
GGUCGGGGGGGCGGG	chr16:67204535-67204788(+)$1	253	57	72	19.3269
GGGAGGCGGGGCGGA	chr11:77531167-77531437(-)$1	270	39	54	20.2884
GGGAGGGGAGGGGGC	chr13:114870159-114870413(-)$1	254	17	32	19.6153
GGGAGGGGGGCAGGG	chrX:133930784-133931088(-)$1	304	55	70	29.7115
UGGGGGUGGGCAGGG	chr17:80016442-80016717(-)$1	275	101	116	19.0384
gggagugcggcggga	chr19:48984100-48984372(+)$1	272	89	104	18.9423
GGGCUGGGGGCGGGG	chrX:149107895-149108180(+)$1	285	29	44	22.8846
GGUUGGGGGGCGGGG	chr16:88566256-88566501(+)$1	245	119	134	22.2115
GGGAGGGGGUGGGGU	chr15:74701929-74702205(-)$1	276	110	125	19.6153
GGGAGGGAUGGAGGG	chr19:4037226-4037475(+)$1	249	69	84	19.9038
GGAGGGGUGGCAGGG	chr17:17729785-17730033(-)$1	248	100	115	18.7500
GGGAGGAGGGUUGGG	chr6:155055111-155055375(+)$1	264	130	145	22.0192
GGGAGGGCGGCCGGA	chr19:4033500-4033743(+)$1	243	95	110	21.4423
GGGAGGCGGGCCGGG	chr7:64499118-64499486(+)$1	368	197	212	24.4230
GGGACGGCGGGAGGC	chr1:26232157-26232424(-)$1	267	92	107	17.4038
GGGUGGGGGGCACGG	chr16:2127655-2127936(+)$1	281	86	101	23.0769
gggaggcgggcgcgg	chr3:195636285-195636569(-)$1	284	46	61	20.7692
GGGAGGGGAUUAGGG	chr15:64753122-64753390(+)$1	268	180	195	19.2307
GGGCUGGGAGCAGGA	chr22:35738302-35738579(+)$1	277	49	64	17.9807
GUGAGGGGGGCAGGG	chr6:37787857-37788148(+)$1	291	204	219	25.0961
GCGAGGCGGGCGGGG	chr11:2017762-2017998(-)$1	236	72	87	20.6730
ggaagugggggaggg	chr17:56408778-56409007(-)$1	229	132	147	20.4807
GGGACGCGGGGAGGA	chr19:46173933-46174199(+)$1	266	77	92	18.9423
GGGCGAGGGGCAGGG	chr12:109124823-109125120(-)$1	297	14	29	23.6538
GCGAGGGGGGAGGGG	chr11:63775039-63775335(-)$1	296	142	157	21.4423
ggcaggugggcuggg	chr11:93276228-93276511(-)$1	283	65	80	20.4807
GGGGUGGGGCCAGGU	chr4:2935881-2936152(-)$1	271	210	225	16.8269
GGGUCUGGGGCAGGG	chr1:1154434-1154698(-)$1	264	95	110	20.8653
GGGAGGGAGGUCGGA	chr7:44252170-44252483(+)$1	313	23	38	19.3269
ggcaguggggcaggu	chr5:180709153-180709401(+)$1	248	36	51	20.0961
GGGUGGGGGGAGGGA	chr2:97525521-97525841(-)$1	320	70	85	21.5384
GGGUGCUGGGCAGGG	chr21:46927108-46927375(+)$1	267	51	66	20.3846
GGGAAGGGUGAAGGG	chr6:160492046-160492317(+)$1	271	40	55	19.9038
GGGAGGGAUGCAGGG	chr16:89368221-89368520(-)$1	299	125	140	21.8269
GGCUGAGGGGCAGGU	chr2:132056908-132057190(+)$1	282	159	174	17.5000
gggcgaggggccggg	chr4:996914-997198(+)$1	284	48	63	21.6346
gggauggggagaggu	chr20:60735363-60735640(+)$1	277	50	65	17.5961
gggucuggggcuggg	chr19:877462-877733(-)$1	271	66	81	18.7500
GGGUGGGGCGUGGGG	chr2:97559864-97560082(-)$1	218	42	57	20.0000
GGGAGGAGGGUUGGG	chr6:155055052-155055311(+)$1	259	189	204	22.0192
GGCAGGUGGGCAGGA	chr22:50011773-50012036(-)$1	263	71	86	20.3846
gggaggagggaaugg	chr19:48893254-48893532(-)$1	278	221	236	19.3269
GGGAAGGGGGUGGGG	chr22:49935143-49935380(-)$1	237	92	107	22.8846
GGGUGUGGGGCAUGG	chr3:47033470-47033720(+)$1	250	111	126	19.8076
GGGAUGGGGGUGGGG	chr22:21212464-21212713(-)$1	249	100	115	23.1730
GGGCUGGGGGCGGGU	chr7:6695685-6695987(+)$1	302	17	32	20.3846

#otherMatches

#Struct PSSM
g666666dddd]a]c	chr22:19705399-19705702(+)$1	303	96	111	25.8653
ffffffa[ccc####	chr5:180709223-180709466(+)$1	243	14	29	20.8653
d333ddddcccgggg	chr19:4053078-4053291(-)$1	213	112	127	22.9807
IIKKA{EEEEE::ff	chr19:5131549-5131805(+)$1	256	32	47	22.4999
ffffffGGGGGGG::	chr11:404655-404968(+)$1	313	115	130	23.7499
TTTTTTTTTTTBB{D	chr1:44337857-44338165(+)$1	308	72	87	24.3269
JJJJJJJJJJ{FFFF	chr16:67204535-67204788(+)$1	253	57	72	19.3269
e"""bb[eeeeemmm	chr11:77531167-77531437(-)$1	270	39	54	20.2884
bb"""dddd[eeeee	chr13:114870159-114870413(-)$1	254	17	32	19.6153
sssssiiiiiiiii2	chrX:133930784-133931088(-)$1	304	55	70	29.7115
gggffffffffffff	chr17:80016442-80016717(-)$1	275	101	116	19.0384
FFFFFF{DDDD{EEE	chr19:48984100-48984372(+)$1	272	89	104	18.9423
HHHHHHH:JJJJJJJ	chrX:149107895-149108180(+)$1	285	29	44	22.8846
gggggFFFFFF:a[g	chr16:88566256-88566501(+)$1	245	119	134	22.2115
ee!!dddd[ffffff	chr15:74701929-74702205(-)$1	276	110	125	19.6153
a[dddd!!dddd[ff	chr19:4037226-4037475(+)$1	249	69	84	19.9038
ddddttttttttttt	chr17:17729785-17730033(-)$1	248	100	115	18.7500
mmmmccc333=====	chr6:155055111-155055375(+)$1	264	130	145	22.0192
dBB}DDDDCCCYYAZ	chr19:4033500-4033743(+)$1	243	95	110	21.4423
eeeeggggggg!!ee	chr7:64499118-64499486(+)$1	368	197	212	24.4230
fffffbb[bb"""gg	chr1:26232157-26232424(-)$1	267	92	107	17.4038
c]ccc22ggggggg4	chr16:2127655-2127936(+)$1	281	86	101	23.0769
###bb[a[a[dddd"	chr3:195636285-195636569(-)$1	284	46	61	20.7692
iii"""a!!ffffff	chr15:64753122-64753390(+)$1	268	180	195	19.2307
eeeee::::DDDDAK	chr22:35738302-35738579(+)$1	277	49	64	17.9807
ee88888888dddd]	chr6:37787857-37788148(+)$1	291	204	219	25.0961
GGGGGGG{A{AKKCC	chr11:2017762-2017998(-)$1	236	72	87	20.6730
DD::eeeeebb[bb!	chr17:56408778-56409007(-)$1	229	132	147	20.4807
d22dddd22eeeee:	chr19:46173933-46174199(+)$1	266	77	92	18.9423
C:bbnnnnnbb::::	chr12:109124823-109125120(-)$1	297	14	29	23.6538
EEE{BB{FFFFFF::	chr11:63775039-63775335(-)$1	296	142	157	21.4423
ddd"""dddd[ccc[	chr11:93276228-93276511(-)$1	283	65	80	20.4807
J}A}A}DDDDDDDDZ	chr4:2935881-2936152(-)$1	271	210	225	16.8269
HHHHHHHHKKFFFFF	chr1:1154434-1154698(-)$1	264	95	110	20.8653
uuuuuuuuuuugggg	chr7:44252170-44252483(+)$1	313	23	38	19.3269
=======[eeeeebb	chr5:180709153-180709401(+)$1	248	36	51	20.0961
ee"""a[ffffffrr	chr2:97525521-97525841(-)$1	320	70	85	21.5384
GGGGGGG::bbpppp	chr21:46927108-46927375(+)$1	267	51	66	20.3846
66666dddd22dddd	chr6:160492046-160492317(+)$1	271	40	55	19.9038
EEEEEE:::HHHHHH	chr16:89368221-89368520(-)$1	299	125	140	21.8269
dddd:::::::dddd	chr2:132056908-132057190(+)$1	282	159	174	17.5000
fffff[dddd[eeee	chr4:996914-997198(+)$1	284	48	63	21.6346
DDDCCC::::::eee	chr20:60735363-60735640(+)$1	277	50	65	17.5961
BEEEEE::cccmmmm	chr19:877462-877733(-)$1	271	66	81	18.7500
ffff[a[ddddgggg	chr2:97559864-97560082(-)$1	218	42	57	20.0000
mmmmccc333=====	chr6:155055052-155055311(+)$1	259	189	204	22.0192
[bb%%%%%%eeeee%	chr22:50011773-50012036(-)$1	263	71	86	20.3846
eeeee::::::::::	chr19:48893254-48893532(-)$1	278	221	236	19.3269
eeeeFFFFFF{BBDD	chr22:49935143-49935380(-)$1	237	92	107	22.8846
B:::JJJJJJJJJJJ	chr3:47033470-47033720(+)$1	250	111	126	19.8076
b::::JJJJJJJJJJ	chr22:21212464-21212713(-)$1	249	100	115	23.1730
e[dddd!!a[aqqqq	chr7:6695685-6695987(+)$1	302	17	32	20.3846

#DB
)......)))).).)	chr22:19705399-19705702(+)$1	1	96	111	25.8653
(((((((.(((....	chr5:180709223-180709466(+)$1	1	14	29	20.8653
)...)))))))((((	chr19:4053078-4053291(-)$1	1	112	127	22.9807
((..(.(((((..((	chr19:5131549-5131805(+)$1	1	32	47	22.4999
))))))(((((((..	chr11:404655-404968(+)$1	1	115	130	23.7499
...........((.(	chr1:44337857-44338165(+)$1	1	72	87	24.3269
((((((((((.((((	chr16:67204535-67204788(+)$1	1	57	72	19.3269
(...((.(((((...	chr11:77531167-77531437(-)$1	1	39	54	20.2884
((...((((.(((((	chr13:114870159-114870413(-)$1	1	17	32	19.6153
.....))))))))).	chrX:133930784-133931088(-)$1	1	55	70	29.7115
)))((((((((((((	chr17:80016442-80016717(-)$1	1	101	116	19.0384
((((((.((((.(((	chr19:48984100-48984372(+)$1	1	89	104	18.9423
(((((((.(((((((	chrX:149107895-149108180(+)$1	1	29	44	22.8846
))))))))))).(.(	chr16:88566256-88566501(+)$1	1	119	134	22.2115
((..((((.((((((	chr15:74701929-74702205(-)$1	1	110	125	19.6153
(.((((..((((.((	chr19:4037226-4037475(+)$1	1	69	84	19.9038
((((...........	chr17:17729785-17730033(-)$1	1	100	115	18.7500
....)))...)))))	chr6:155055111-155055375(+)$1	1	130	145	22.0192
))).)))))))..).	chr19:4033500-4033743(+)$1	1	95	110	21.4423
))))(((((((..((	chr7:64499118-64499486(+)$1	1	197	212	24.4230
)))))((.((...((	chr1:26232157-26232424(-)$1	1	92	107	17.4038
).)))..))))))).	chr16:2127655-2127936(+)$1	1	86	101	23.0769
...((.(.(.((((.	chr3:195636285-195636569(-)$1	1	46	61	20.7692
(((...(..((((((	chr15:64753122-64753390(+)$1	1	180	195	19.2307
)))))....(((((.	chr22:35738302-35738579(+)$1	1	49	64	17.9807
))........)))).	chr6:37787857-37788148(+)$1	1	204	219	25.0961
(((((((.(.(..((	chr11:2017762-2017998(-)$1	1	72	87	20.6730
((..(((((((.((.	chr17:56408778-56409007(-)$1	1	132	147	20.4807
)..))))..))))).	chr19:46173933-46174199(+)$1	1	77	92	18.9423
(.((.....))....	chr12:109124823-109125120(-)$1	1	14	29	23.6538
(((.((.((((((..	chr11:63775039-63775335(-)$1	1	142	157	21.4423
(((...((((.(((.	chr11:93276228-93276511(-)$1	1	65	80	20.4807
).).).)))))))).	chr4:2935881-2936152(-)$1	1	210	225	16.8269
((((((((..(((((	chr1:1154434-1154698(-)$1	1	95	110	20.8653
...........))))	chr7:44252170-44252483(+)$1	1	23	38	19.3269
(((((((.(((((((	chr5:180709153-180709401(+)$1	1	36	51	20.0961
((...(.((((((..	chr2:97525521-97525841(-)$1	1	70	85	21.5384
(((((((..((....	chr21:46927108-46927375(+)$1	1	51	66	20.3846
.....))))..))))	chr6:160492046-160492317(+)$1	1	40	55	19.9038
)(((((...((((((	chr16:89368221-89368520(-)$1	1	125	140	21.8269
)))).......((((	chr2:132056908-132057190(+)$1	1	159	174	17.5000
(((((.((((.((((	chr4:996914-997198(+)$1	1	48	63	21.6346
((((((......(((	chr20:60735363-60735640(+)$1	1	50	65	17.5961
((((((..(((....	chr19:877462-877733(-)$1	1	66	81	18.7500
((((.(.((((((((	chr2:97559864-97560082(-)$1	1	42	57	20.0000
....)))...)))))	chr6:155055052-155055311(+)$1	1	189	204	22.0192
.((......(((((.	chr22:50011773-50012036(-)$1	1	71	86	20.3846
)))))..........	chr19:48893254-48893532(-)$1	1	221	236	19.3269
))))((((((.((((	chr22:49935143-49935380(-)$1	1	92	107	22.8846
)...(((((((((((	chr3:47033470-47033720(+)$1	1	111	126	19.8076
)....((((((((((	chr22:21212464-21212713(-)$1	1	100	115	23.1730
(.((((..(.(....	chr7:6695685-6695987(+)$1	1	17	32	20.3846

#PSSM
G : 0.75	g : 0.21	a : 0.01	U : 0.01	
G : 0.71	g : 0.23	C : 0.03	U : 0.01	
G : 0.67	g : 0.17	U : 0.03	c : 0.03	C : 0.03	A : 0.01	a : 0.01	
A : 0.44	a : 0.17	U : 0.15	C : 0.09	G : 0.07	c : 0.03	u : 0.01	
G : 0.57	g : 0.17	U : 0.09	C : 0.05	A : 0.03	a : 0.01	u : 0.01	c : 0.01	
G : 0.65	g : 0.13	u : 0.07	U : 0.05	A : 0.03	C : 0.01	a : 0.01	
G : 0.57	g : 0.17	U : 0.07	C : 0.07	A : 0.03	c : 0.01	u : 0.01	a : 0.01	
G : 0.65	g : 0.21	A : 0.05	C : 0.03	c : 0.01	U : 0.01	
G : 0.61	g : 0.23	U : 0.07	A : 0.05	C : 0.01	
G : 0.71	g : 0.21	U : 0.03	C : 0.01	a : 0.01	
C : 0.44	c : 0.13	G : 0.13	U : 0.13	g : 0.05	A : 0.05	u : 0.01	a : 0.01	
A : 0.40	G : 0.23	a : 0.11	C : 0.09	u : 0.05	g : 0.03	U : 0.03	c : 0.01	
G : 0.73	g : 0.19	C : 0.01	c : 0.01	u : 0.01	U : 0.01	
G : 0.76	g : 0.23	
G : 0.49	A : 0.15	g : 0.13	U : 0.07	u : 0.05	a : 0.03	C : 0.03	

#score	1091.9230769230771
#seq	52
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_transcript_m2_run1.nuc.txt

#NT
ggug	chr11:76594342-76594556(+)$1	214	70	74	12.0000
GGUG	chr19:23507649-23507906(-)$1	257	49	53	12.0000
GGUG	chr11:62300156-62300416(-)$1	260	99	103	12.0000
GGUG	chr11:66384651-66384890(+)$1	239	5	9	12.0000
GGUG	chr12:123997696-123998056(-)$1	360	42	46	12.0000
GGUG	chr11:68084435-68084715(+)$1	280	43	47	12.0000
GGUG	chr1:8651552-8651798(-)$1	246	71	75	12.0000
GGUG	chr17:4849841-4850089(-)$1	248	57	61	12.0000
GGUG	chr16:89906048-89906330(+)$1	282	100	104	12.0000
GGUG	chr16:89417671-89417951(-)$1	280	78	82	12.0000
GGUG	chr17:75212402-75212697(+)$1	295	154	158	12.0000
ggug	chr19:23507461-23507708(-)$1	247	169	173	12.0000
GGUG	chr16:85838465-85838808(+)$1	343	24	28	12.0000
GGUG	chr16:50583734-50583987(+)$1	253	63	67	12.0000
GGUG	chr12:123998110-123998381(-)$1	271	33	37	12.0000
GGUG	chr6:64282663-64282912(+)$1	249	80	84	12.0000
ggug	chr8:77557719-77557950(-)$1	231	129	133	12.0000
GGUG	chr18:43669431-43669704(-)$1	273	119	123	12.0000
GGUG	chr3:197245910-197246193(-)$1	283	272	276	12.0000
GGUG	chr17:165316-165585(-)$1	269	73	77	12.0000
ggug	chr17:7077807-7078029(-)$1	222	60	64	12.0000
GGUG	chr3:186504436-186504642(+)$1	206	148	152	12.0000
GGUG	chr7:158126199-158126482(-)$1	283	27	31	12.0000
GGUG	chr22:35738410-35738662(+)$1	252	50	54	12.0000
ggug	chrX:68892277-68892482(+)$1	205	151	155	12.0000
ggug	chr8:9629682-9629968(+)$1	286	195	199	12.0000
GGUG	chr16:81499130-81499397(+)$1	267	182	186	12.0000
GGUG	chr3:65880829-65881090(-)$1	261	1	5	12.0000
GGUG	chr17:41150663-41150890(+)$1	227	130	134	12.0000
GGUG	chr17:165172-165424(-)$1	252	3	7	12.0000
GGUG	chr3:186504450-186504655(+)$1	205	134	138	12.0000
GGUG	chr17:80408101-80408385(-)$1	284	29	33	12.0000
GGUG	chr9:33112319-33112585(-)$1	266	6	10	12.0000
GGUG	chr22:35738301-35738595(+)$1	294	24	28	12.0000
GGUG	chr17:164426-164677(-)$1	251	17	21	12.0000
GGUG	chr19:45314400-45314631(+)$1	231	45	49	12.0000
ggug	chr7:158223993-158224249(-)$1	256	49	53	12.0000
GGUG	chr14:21731679-21731902(-)$1	223	52	56	12.0000
GGUG	chr17:165420-165698(-)$1	278	2	6	12.0000
GGUG	chr3:186504432-186504636(+)$1	204	152	156	12.0000
ggug	chr16:88584159-88584459(+)$1	300	9	13	12.0000
GGUG	chr3:41274968-41275211(+)$1	243	189	193	12.0000
GGUG	chrM:12181-12413(+)$1	232	134	138	12.0000
GGUG	chr16:50630572-50630823(+)$1	251	1	5	12.0000
ggug	chr19:45981754-45981978(-)$1	224	58	62	12.0000
GGUG	chr2:241900839-241901081(-)$1	242	134	138	12.0000
GGUG	chr17:57915200-57915439(+)$1	239	58	62	12.0000
GGUG	chr3:197243781-197244066(-)$1	285	7	11	12.0000
GGUG	chr14:94908788-94909044(-)$1	256	106	110	12.0000
GGUG	chr14:50235029-50235305(+)$1	276	118	122	12.0000
GGUG	chr4:83816906-83817165(-)$1	259	252	256	12.0000
GGUG	chr17:75428644-75428898(+)$1	254	109	113	12.0000
GGUG	chr12:123997900-123998178(-)$1	278	164	168	12.0000
GGUG	chr7:158055950-158056222(-)$1	272	36	40	12.0000
GGUG	chr19:23507110-23507355(-)$1	245	125	129	12.0000
GGUG	chr3:186504442-186504650(+)$1	208	142	146	12.0000
GGUG	chr5:79946914-79947191(-)$1	277	72	76	12.0000
GGUG	chr11:125472097-125472411(+)$1	314	39	43	12.0000
ggug	chr19:15754219-15754484(+)$1	265	203	207	12.0000
GGUG	chr2:20192610-20192904(-)$1	294	70	74	12.0000
GGUG	chr19:33949945-33950234(-)$1	289	144	148	12.0000
GGUG	chr1:12644496-12644773(-)$1	277	34	38	12.0000
GGUG	chr3:186504423-186504632(+)$1	209	161	165	12.0000
ggug	chr8:9628306-9628679(+)$1	373	205	209	12.0000
ggug	chrX:68892267-68892477(+)$1	210	161	165	12.0000
GGUG	chr16:81547155-81547394(+)$1	239	46	50	12.0000
Ggug	chr21:44268652-44268900(-)$1	248	17	21	12.0000
GGUG	chr1:2214787-2215053(+)$1	266	50	54	12.0000
GGUG	chrX:153063683-153063964(+)$1	281	31	35	12.0000
GGUG	chr17:95455-95704(-)$1	249	39	43	12.0000
GGUG	chr1:173835915-173836165(-)$1	250	57	61	12.0000
GGUG	chr3:160232857-160233086(-)$1	229	88	92	12.0000
GGUG	chrX:118602417-118602680(+)$1	263	103	107	12.0000
ggUG	chr7:157568555-157568790(-)$1	235	52	56	12.0000
ggug	chr7:157568616-157568844(-)$1	228	28	32	12.0000
ggug	chr19:23505073-23505352(-)$1	279	171	175	12.0000
GGUG	chr17:57721630-57721899(+)$1	269	110	114	12.0000
GGUG	chr3:186504419-186504623(+)$1	204	165	169	12.0000
GGUG	chr19:893460-893690(+)$1	230	3	7	12.0000
GGUG	chr6:43752768-43753032(+)$1	264	115	119	12.0000
ggug	chr2:241900619-241900886(-)$1	267	55	59	12.0000
GGUG	chrX:132669918-132670156(-)$1	238	11	15	12.0000

#otherMatches

#Struct PSSM
55ff	chr1:151178667-151178945(+)$1	278	254	258	12.0000
dd]h	chr11:76594342-76594556(+)$1	214	70	74	12.0000
eee]	chr19:23507649-23507906(-)$1	257	49	53	12.0000
fff"	chr11:62300156-62300416(-)$1	260	99	103	12.0000
ee##	chr11:66384651-66384890(+)$1	239	5	9	12.0000
ffff	chr12:123997696-123998056(-)$1	360	42	46	12.0000
ggbb	chr11:68084435-68084715(+)$1	280	43	47	12.0000
===>	chr1:8651552-8651798(-)$1	246	71	75	12.0000
EEEE	chr17:4849841-4850089(-)$1	248	57	61	12.0000
II{A	chr16:89906048-89906330(+)$1	282	100	104	12.0000
]ccc	chr16:89417671-89417951(-)$1	280	78	82	12.0000
ea]d	chr17:75212402-75212697(+)$1	295	154	158	12.0000
hhhh	chr19:23507461-23507708(-)$1	247	169	173	12.0000
eeee	chr16:85838465-85838808(+)$1	343	24	28	12.0000
====	chr16:50583734-50583987(+)$1	253	63	67	12.0000
ff[a	chr12:123998110-123998381(-)$1	271	33	37	12.0000
ppbb	chr6:64282663-64282912(+)$1	249	80	84	12.0000
e:::	chr8:77557719-77557950(-)$1	231	129	133	12.0000
iiii	chr18:43669431-43669704(-)$1	273	119	123	12.0000
BB}A	chr3:197245910-197246193(-)$1	283	272	276	12.0000
PCCC	chr17:165316-165585(-)$1	269	73	77	12.0000
bb""	chr17:7077807-7078029(-)$1	222	60	64	12.0000
ddee	chr3:186504436-186504642(+)$1	206	148	152	12.0000
====	chr7:158126199-158126482(-)$1	283	27	31	12.0000
eeee	chr22:35738410-35738662(+)$1	252	50	54	12.0000
gggJ	chrX:68892277-68892482(+)$1	205	151	155	12.0000
dddd	chr8:9629682-9629968(+)$1	286	195	199	12.0000
ffff	chr16:81499130-81499397(+)$1	267	182	186	12.0000
:EEE	chr3:65880829-65881090(-)$1	261	1	5	12.0000
gg]b	chr17:41150663-41150890(+)$1	227	130	134	12.0000
::::	chr17:165172-165424(-)$1	252	3	7	12.0000
ddee	chr3:186504450-186504655(+)$1	205	134	138	12.0000
g[bb	chr17:80408101-80408385(-)$1	284	29	33	12.0000
::::	chr9:33112319-33112585(-)$1	266	6	10	12.0000
bnnn	chr22:35738301-35738595(+)$1	294	24	28	12.0000
aooo	chr17:164426-164677(-)$1	251	17	21	12.0000
hhhh	chr19:45314400-45314631(+)$1	231	45	49	12.0000
eee[	chr7:158223993-158224249(-)$1	256	49	53	12.0000
c[dd	chr14:21731679-21731902(-)$1	223	52	56	12.0000
KKBB	chr17:165420-165698(-)$1	278	2	6	12.0000
ddee	chr3:186504432-186504636(+)$1	204	152	156	12.0000
ccc[	chr16:88584159-88584459(+)$1	300	9	13	12.0000
ccc5	chr3:41274968-41275211(+)$1	243	189	193	12.0000
deee	chrM:12181-12413(+)$1	232	134	138	12.0000
::::	chr16:50630572-50630823(+)$1	251	1	5	12.0000
g22d	chr19:45981754-45981978(-)$1	224	58	62	12.0000
333c	chr2:241900839-241901081(-)$1	242	134	138	12.0000
eeef	chr17:57915200-57915439(+)$1	239	58	62	12.0000
GGGG	chr3:197243781-197244066(-)$1	285	7	11	12.0000
eeee	chr14:94908788-94909044(-)$1	256	106	110	12.0000
EE{G	chr14:50235029-50235305(+)$1	276	118	122	12.0000
EEEE	chr4:83816906-83817165(-)$1	259	252	256	12.0000
hahh	chr17:75428644-75428898(+)$1	254	109	113	12.0000
bb[b	chr12:123997900-123998178(-)$1	278	164	168	12.0000
eeeo	chr7:158055950-158056222(-)$1	272	36	40	12.0000
eeee	chr19:23507110-23507355(-)$1	245	125	129	12.0000
ddee	chr3:186504442-186504650(+)$1	208	142	146	12.0000
5ddd	chr5:79946914-79947191(-)$1	277	72	76	12.0000
hh33	chr11:125472097-125472411(+)$1	314	39	43	12.0000
::::	chr19:15754219-15754484(+)$1	265	203	207	12.0000
gggg	chr2:20192610-20192904(-)$1	294	70	74	12.0000
fffg	chr19:33949945-33950234(-)$1	289	144	148	12.0000
ffff	chr1:12644496-12644773(-)$1	277	34	38	12.0000
a]bb	chr3:186504423-186504632(+)$1	209	161	165	12.0000
vvvv	chr8:9628306-9628679(+)$1	373	205	209	12.0000
gggJ	chrX:68892267-68892477(+)$1	210	161	165	12.0000
ffff	chr16:81547155-81547394(+)$1	239	46	50	12.0000
gggg	chr21:44268652-44268900(-)$1	248	17	21	12.0000
fbb[	chr1:2214787-2215053(+)$1	266	50	54	12.0000
cc]i	chrX:153063683-153063964(+)$1	281	31	35	12.0000
ffff	chr17:95455-95704(-)$1	249	39	43	12.0000
JJJJ	chr1:173835915-173836165(-)$1	250	57	61	12.0000
cc]f	chr3:160232857-160233086(-)$1	229	88	92	12.0000
::ee	chrX:118602417-118602680(+)$1	263	103	107	12.0000
ammm	chr7:157568555-157568790(-)$1	235	52	56	12.0000
KFFF	chr7:157568616-157568844(-)$1	228	28	32	12.0000
MMJJ	chr19:23505073-23505352(-)$1	279	171	175	12.0000
ccc[	chr17:57721630-57721899(+)$1	269	110	114	12.0000
a]bb	chr3:186504419-186504623(+)$1	204	165	169	12.0000
BB{F	chr19:893460-893690(+)$1	230	3	7	12.0000
leee	chr6:43752768-43753032(+)$1	264	115	119	12.0000
nnnd	chr2:241900619-241900886(-)$1	267	55	59	12.0000
:ddd	chrX:132669918-132670156(-)$1	238	11	15	12.0000

#DB
..))	chr1:151178667-151178945(+)$1	1	254	258	12.0000
)).)	chr11:76594342-76594556(+)$1	1	70	74	12.0000
))).	chr19:23507649-23507906(-)$1	1	49	53	12.0000
(((.	chr11:62300156-62300416(-)$1	1	99	103	12.0000
((..	chr11:66384651-66384890(+)$1	1	5	9	12.0000
((((	chr12:123997696-123998056(-)$1	1	42	46	12.0000
))))	chr11:68084435-68084715(+)$1	1	43	47	12.0000
))).	chr1:8651552-8651798(-)$1	1	71	75	12.0000
((((	chr17:4849841-4850089(-)$1	1	57	61	12.0000
((.(	chr16:89906048-89906330(+)$1	1	100	104	12.0000
.)))	chr16:89417671-89417951(-)$1	1	78	82	12.0000
)).)	chr17:75212402-75212697(+)$1	1	154	158	12.0000
((((	chr19:23507461-23507708(-)$1	1	169	173	12.0000
))))	chr16:85838465-85838808(+)$1	1	24	28	12.0000
))))	chr16:50583734-50583987(+)$1	1	63	67	12.0000
((.(	chr12:123998110-123998381(-)$1	1	33	37	12.0000
..))	chr6:64282663-64282912(+)$1	1	80	84	12.0000
)...	chr8:77557719-77557950(-)$1	1	129	133	12.0000
))))	chr18:43669431-43669704(-)$1	1	119	123	12.0000
)).)	chr3:197245910-197246193(-)$1	1	272	276	12.0000
.(((	chr17:165316-165585(-)$1	1	73	77	12.0000
((..	chr17:7077807-7078029(-)$1	1	60	64	12.0000
((((	chr3:186504436-186504642(+)$1	1	148	152	12.0000
((((	chr7:158126199-158126482(-)$1	1	27	31	12.0000
((((	chr22:35738410-35738662(+)$1	1	50	54	12.0000
))))	chrX:68892277-68892482(+)$1	1	151	155	12.0000
))))	chr8:9629682-9629968(+)$1	1	195	199	12.0000
))))	chr16:81499130-81499397(+)$1	1	182	186	12.0000
.(((	chr3:65880829-65881090(-)$1	1	1	5	12.0000
)).)	chr17:41150663-41150890(+)$1	1	130	134	12.0000
....	chr17:165172-165424(-)$1	1	3	7	12.0000
((((	chr3:186504450-186504655(+)$1	1	134	138	12.0000
(.((	chr17:80408101-80408385(-)$1	1	29	33	12.0000
....	chr9:33112319-33112585(-)$1	1	6	10	12.0000
(...	chr22:35738301-35738595(+)$1	1	24	28	12.0000
(...	chr17:164426-164677(-)$1	1	17	21	12.0000
((((	chr19:45314400-45314631(+)$1	1	45	49	12.0000
(((.	chr7:158223993-158224249(-)$1	1	49	53	12.0000
(.((	chr14:21731679-21731902(-)$1	1	52	56	12.0000
..((	chr17:165420-165698(-)$1	1	2	6	12.0000
((((	chr3:186504432-186504636(+)$1	1	152	156	12.0000
(((.	chr16:88584159-88584459(+)$1	1	9	13	12.0000
))).	chr3:41274968-41275211(+)$1	1	189	193	12.0000
)(((	chrM:12181-12413(+)$1	1	134	138	12.0000
....	chr16:50630572-50630823(+)$1	1	1	5	12.0000
)..)	chr19:45981754-45981978(-)$1	1	58	62	12.0000
...)	chr2:241900839-241901081(-)$1	1	134	138	12.0000
((((	chr17:57915200-57915439(+)$1	1	58	62	12.0000
((((	chr3:197243781-197244066(-)$1	1	7	11	12.0000
))))	chr14:94908788-94909044(-)$1	1	106	110	12.0000
((.(	chr14:50235029-50235305(+)$1	1	118	122	12.0000
))))	chr4:83816906-83817165(-)$1	1	252	256	12.0000
((((	chr17:75428644-75428898(+)$1	1	109	113	12.0000
((.(	chr12:123997900-123998178(-)$1	1	164	168	12.0000
(((.	chr7:158055950-158056222(-)$1	1	36	40	12.0000
))))	chr19:23507110-23507355(-)$1	1	125	129	12.0000
((((	chr3:186504442-186504650(+)$1	1	142	146	12.0000
.)))	chr5:79946914-79947191(-)$1	1	72	76	12.0000
))..	chr11:125472097-125472411(+)$1	1	39	43	12.0000
....	chr19:15754219-15754484(+)$1	1	203	207	12.0000
))))	chr2:20192610-20192904(-)$1	1	70	74	12.0000
((((	chr19:33949945-33950234(-)$1	1	144	148	12.0000
((((	chr1:12644496-12644773(-)$1	1	34	38	12.0000
).))	chr3:186504423-186504632(+)$1	1	161	165	12.0000
....	chr8:9628306-9628679(+)$1	1	205	209	12.0000
))))	chrX:68892267-68892477(+)$1	1	161	165	12.0000
))))	chr16:81547155-81547394(+)$1	1	46	50	12.0000
))))	chr21:44268652-44268900(-)$1	1	17	21	12.0000
)((.	chr1:2214787-2215053(+)$1	1	50	54	12.0000
)).)	chrX:153063683-153063964(+)$1	1	31	35	12.0000
))))	chr17:95455-95704(-)$1	1	39	43	12.0000
((((	chr1:173835915-173836165(-)$1	1	57	61	12.0000
)).)	chr3:160232857-160233086(-)$1	1	88	92	12.0000
..((	chrX:118602417-118602680(+)$1	1	103	107	12.0000
(...	chr7:157568555-157568790(-)$1	1	52	56	12.0000
.(((	chr7:157568616-157568844(-)$1	1	28	32	12.0000
..((	chr19:23505073-23505352(-)$1	1	171	175	12.0000
(((.	chr17:57721630-57721899(+)$1	1	110	114	12.0000
).))	chr3:186504419-186504623(+)$1	1	165	169	12.0000
((.(	chr19:893460-893690(+)$1	1	3	7	12.0000
.)))	chr6:43752768-43753032(+)$1	1	115	119	12.0000
...)	chr2:241900619-241900886(-)$1	1	55	59	12.0000
.(((	chrX:132669918-132670156(-)$1	1	11	15	12.0000

#PSSM
G : 0.80	g : 0.19	
G : 0.79	g : 0.20	
U : 0.80	u : 0.19	
G : 0.80	g : 0.19	

#score	996.0000000000001
#seq	83
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_CDS_m2_run1.nuc.txt

#NT
UGG	chrX:70518218-70518456(+)$1	238	31	34	9.0000
UGG	chr5:149827194-149827398(-)$1	204	52	55	9.0000
UGG	chr20:34287455-34287702(+)$1	247	15	18	9.0000
UGG	chr7:99056760-99056986(-)$1	226	163	166	9.0000
UGG	chr19:40330983-40331254(-)$1	271	5	8	9.0000
UGG	chr19:50921094-50921365(+)$1	271	51	54	9.0000
UGG	chr19:5691462-5691706(+)$1	244	7	10	9.0000
UGG	chr6:31605254-31605502(+)$1	248	7	10	9.0000
UGG	chr19:46190806-46191088(-)$1	282	17	20	9.0000
UGG	chr17:1553852-1554106(-)$1	254	90	93	9.0000
UGG	chr19:36142034-36142265(+)$1	231	36	39	9.0000
UGG	chr2:98263433-98263678(+)$1	245	97	100	9.0000
UGG	chr21:35275677-35275971(-)$1	294	44	47	9.0000
UGG	chr9:127623676-127623926(-)$1	250	1	4	9.0000
UGG	chr1:46083631-46083944(+)$1	313	0	3	9.0000
UGG	chrX:119010376-119010594(+)$1	218	26	29	9.0000
UGG	chr16:29708525-29708917(+)$1	392	40	43	9.0000
UGG	chr19:18652545-18652802(-)$1	257	23	26	9.0000
UGG	chr11:64084639-64084878(-)$1	239	66	69	9.0000
UGG	chr14:23566985-23567327(+)$1	342	14	17	9.0000
UGG	chr12:56511165-56511393(+)$1	228	24	27	9.0000
UGG	chr11:18425138-18425353(+)$1	215	61	64	9.0000
ugg	chrX:118923871-118924074(-)$1	203	22	25	9.0000
UGG	chr22:24964003-24964245(+)$1	242	13	16	9.0000
UGG	chr6:75949916-75950174(-)$1	258	20	23	9.0000
UGG	chr19:38746677-38746956(-)$1	279	125	128	9.0000
UGG	chr18:9124770-9125049(+)$1	279	70	73	9.0000
UGG	chr1:52256476-52256759(-)$1	283	203	206	9.0000
UGG	chr1:40535732-40536001(+)$1	269	1	4	9.0000
UGG	chr19:36145430-36145673(+)$1	243	13	16	9.0000
UGG	chr7:26232770-26233015(-)$1	245	29	32	9.0000
UGG	chr4:57325490-57325754(+)$1	264	51	54	9.0000
UGG	chr1:113245096-113245363(-)$1	267	11	14	9.0000
UGG	chr11:18428625-18428886(+)$1	261	87	90	9.0000
UGG	chr19:7695608-7695833(+)$1	225	4	7	9.0000
UGG	chr17:39680112-39680351(-)$1	239	27	30	9.0000
UGG	chr11:64084466-64084717(-)$1	251	81	84	9.0000
UGG	chr2:232576553-232576793(+)$1	240	3	6	9.0000
UGG	chr2:98263478-98263704(+)$1	226	52	55	9.0000
UGG	chr16:70286478-70286751(-)$1	273	0	3	9.0000
UGG	chr1:24021051-24021276(+)$1	225	1	4	9.0000
UGG	chr9:140446836-140447080(+)$1	244	37	40	9.0000
UGG	chr2:198365044-198365263(+)$1	219	1	4	9.0000
UGG	chr12:56552366-56552596(+)$1	230	6	9	9.0000
UGG	chr16:723952-724206(+)$1	254	14	17	9.0000
UGG	chr5:179155491-179155696(+)$1	205	21	24	9.0000
UGG	chr14:92583741-92584052(-)$1	311	72	75	9.0000
UGG	chr1:151374192-151374487(+)$1	295	8	11	9.0000
UGG	chr1:45976935-45977183(-)$1	248	23	26	9.0000
UGG	chr16:21994357-21994651(+)$1	294	71	74	9.0000
UGG	chr2:98263706-98263916(+)$1	210	22	25	9.0000
UGG	chr12:6647174-6647403(+)$1	229	10	13	9.0000
UGG	chr14:23495146-23495414(-)$1	268	47	50	9.0000
UGG	chr16:31202322-31202532(+)$1	210	40	43	9.0000
UGG	chr16:202819-203051(+)$1	232	19	22	9.0000
UGG	chr2:70520677-70520943(-)$1	266	51	54	9.0000
UGG	chr7:99057635-99057893(-)$1	258	4	7	9.0000
UGG	chr3:150262133-150262387(-)$1	254	11	14	9.0000
UGG	chr3:184052576-184052888(+)$1	312	6	9	9.0000
UGG	chr16:417604-417883(-)$1	279	14	17	9.0000
UGG	chr2:101622707-101622978(+)$1	271	6	9	9.0000
UGG	chr20:2448295-2448504(-)$1	209	0	3	9.0000
UGG	chr6:33243641-33243845(+)$1	204	39	42	9.0000
UGG	chr1:1309285-1309533(-)$1	248	92	95	9.0000
UGG	chr5:159849261-159849510(+)$1	249	59	62	9.0000
UGG	chrX:49453959-49454202(-)$1	243	102	105	9.0000
UGG	chr11:5291012-5291219(-)$1	207	92	95	9.0000
UGG	chrX:71492374-71492647(-)$1	273	37	40	9.0000
UGG	chr7:99689303-99689594(+)$1	291	130	133	9.0000
UGG	chr17:27076851-27077133(+)$1	282	12	15	9.0000
UGG	chrX:118925435-118925642(-)$1	207	75	78	9.0000
UGG	chr6:33384423-33384653(-)$1	230	12	15	9.0000
UGG	chrX:77160606-77160924(+)$1	318	34	37	9.0000
UGG	chr1:45480907-45481152(+)$1	245	64	67	9.0000
UGG	chr19:19626937-19627212(+)$1	275	54	57	9.0000
UGG	chr12:57031949-57032218(-)$1	269	47	50	9.0000
UGG	chr2:232577061-232577327(+)$1	266	62	65	9.0000
UGG	chr7:99751475-99751733(+)$1	258	14	17	9.0000
UGG	chrX:47073643-47073917(+)$1	274	0	3	9.0000
UGG	chr15:44085146-44085374(+)$1	228	166	169	9.0000
UGG	chr11:60658115-60658381(-)$1	266	26	29	9.0000
UGG	chr1:156280252-156280538(-)$1	286	88	91	9.0000
UGG	chr15:78841078-78841389(+)$1	311	53	56	9.0000
UGG	chr6:33258396-33258693(+)$1	297	213	216	9.0000
UGG	chr12:6879052-6879265(+)$1	213	22	25	9.0000
UGG	chr10:105151912-105152140(-)$1	228	59	62	9.0000
UGG	chr9:100774628-100774854(+)$1	226	32	35	9.0000
UGG	chr2:232576502-232576753(+)$1	251	13	16	9.0000
UGG	chr10:106026953-106027276(+)$1	323	87	90	9.0000
UGG	chr2:70515098-70515363(-)$1	265	49	52	9.0000
UGG	chr6:34211167-34211395(+)$1	228	14	17	9.0000
UGG	chr9:130931229-130931515(-)$1	286	28	31	9.0000
UGG	chr11:5290797-5291006(-)$1	209	0	3	9.0000
UGG	chrX:119007179-119007452(+)$1	273	0	3	9.0000
UGG	chr19:50000350-50000564(+)$1	214	7	10	9.0000
UGG	chr19:13054502-13054752(+)$1	250	244	247	9.0000
UGG	chr6:33243702-33243912(+)$1	210	24	27	9.0000
UGG	chr11:67379744-67380053(+)$1	309	24	27	9.0000
UGG	chr3:122128548-122128869(+)$1	321	145	148	9.0000

#otherMatches

#Struct PSSM
nnn	chr7:99063633-99063889(-)$1	256	55	58	9.0000
gee	chrX:70518218-70518456(+)$1	238	31	34	9.0000
www	chr5:149827194-149827398(-)$1	204	52	55	9.0000
eee	chr20:34287455-34287702(+)$1	247	15	18	9.0000
2ff	chr7:99056760-99056986(-)$1	226	163	166	9.0000
:CC	chr19:40330983-40331254(-)$1	271	5	8	9.0000
eee	chr19:50921094-50921365(+)$1	271	51	54	9.0000
ppp	chr19:5691462-5691706(+)$1	244	7	10	9.0000
JJJ	chr6:31605254-31605502(+)$1	248	7	10	9.0000
:hh	chr19:46190806-46191088(-)$1	282	17	20	9.0000
5dd	chr17:1553852-1554106(-)$1	254	90	93	9.0000
eee	chr19:36142034-36142265(+)$1	231	36	39	9.0000
eee	chr2:98263433-98263678(+)$1	245	97	100	9.0000
hhh	chr21:35275677-35275971(-)$1	294	44	47	9.0000
ddd	chr9:127623676-127623926(-)$1	250	1	4	9.0000
ddd	chr1:46083631-46083944(+)$1	313	0	3	9.0000
EE:	chrX:119010376-119010594(+)$1	218	26	29	9.0000
===	chr16:29708525-29708917(+)$1	392	40	43	9.0000
ddm	chr19:18652545-18652802(-)$1	257	23	26	9.0000
ccc	chr11:64084639-64084878(-)$1	239	66	69	9.0000
eee	chr14:23566985-23567327(+)$1	342	14	17	9.0000
EEE	chr12:56511165-56511393(+)$1	228	24	27	9.0000
ddd	chr11:18425138-18425353(+)$1	215	61	64	9.0000
===	chrX:118923871-118924074(-)$1	203	22	25	9.0000
{EE	chr22:24964003-24964245(+)$1	242	13	16	9.0000
b]d	chr6:75949916-75950174(-)$1	258	20	23	9.0000
f33	chr19:38746677-38746956(-)$1	279	125	128	9.0000
:==	chr18:9124770-9125049(+)$1	279	70	73	9.0000
JJJ	chr1:52256476-52256759(-)$1	283	203	206	9.0000
:EE	chr1:40535732-40536001(+)$1	269	1	4	9.0000
pcc	chr19:36145430-36145673(+)$1	243	13	16	9.0000
ddd	chr7:26232770-26233015(-)$1	245	29	32	9.0000
ccd	chr4:57325490-57325754(+)$1	264	51	54	9.0000
{DD	chr1:113245096-113245363(-)$1	267	11	14	9.0000
ggl	chr11:18428625-18428886(+)$1	261	87	90	9.0000
FF{	chr19:7695608-7695833(+)$1	225	4	7	9.0000
ooc	chr17:39680112-39680351(-)$1	239	27	30	9.0000
ccc	chr11:64084466-64084717(-)$1	251	81	84	9.0000
d[a	chr2:232576553-232576793(+)$1	240	3	6	9.0000
eee	chr2:98263478-98263704(+)$1	226	52	55	9.0000
:::	chr16:70286478-70286751(-)$1	273	0	3	9.0000
:::	chr1:24021051-24021276(+)$1	225	1	4	9.0000
DDD	chr9:140446836-140447080(+)$1	244	37	40	9.0000
FFF	chr2:198365044-198365263(+)$1	219	1	4	9.0000
:DD	chr12:56552366-56552596(+)$1	230	6	9	9.0000
HHH	chr16:723952-724206(+)$1	254	14	17	9.0000
lle	chr5:179155491-179155696(+)$1	205	21	24	9.0000
:::	chr14:92583741-92584052(-)$1	311	72	75	9.0000
imm	chr1:151374192-151374487(+)$1	295	8	11	9.0000
KHH	chr1:45976935-45977183(-)$1	248	23	26	9.0000
d]c	chr16:21994357-21994651(+)$1	294	71	74	9.0000
FBB	chr2:98263706-98263916(+)$1	210	22	25	9.0000
eee	chr12:6647174-6647403(+)$1	229	10	13	9.0000
iii	chr14:23495146-23495414(-)$1	268	47	50	9.0000
nnn	chr16:31202322-31202532(+)$1	210	40	43	9.0000
b[g	chr16:202819-203051(+)$1	232	19	22	9.0000
hhh	chr2:70520677-70520943(-)$1	266	51	54	9.0000
fff	chr7:99057635-99057893(-)$1	258	4	7	9.0000
eee	chr3:150262133-150262387(-)$1	254	11	14	9.0000
D{C	chr3:184052576-184052888(+)$1	312	6	9	9.0000
MDD	chr16:417604-417883(-)$1	279	14	17	9.0000
ccc	chr2:101622707-101622978(+)$1	271	6	9	9.0000
:::	chr20:2448295-2448504(-)$1	209	0	3	9.0000
a[e	chr6:33243641-33243845(+)$1	204	39	42	9.0000
fff	chr1:1309285-1309533(-)$1	248	92	95	9.0000
qqq	chr5:159849261-159849510(+)$1	249	59	62	9.0000
qqb	chrX:49453959-49454202(-)$1	243	102	105	9.0000
EEE	chr11:5291012-5291219(-)$1	207	92	95	9.0000
bb!	chrX:71492374-71492647(-)$1	273	37	40	9.0000
NEE	chr7:99689303-99689594(+)$1	291	130	133	9.0000
iii	chr17:27076851-27077133(+)$1	282	12	15	9.0000
ddd	chrX:118925435-118925642(-)$1	207	75	78	9.0000
:::	chr6:33384423-33384653(-)$1	230	12	15	9.0000
ff$	chrX:77160606-77160924(+)$1	318	34	37	9.0000
d[a	chr1:45480907-45481152(+)$1	245	64	67	9.0000
fff	chr19:19626937-19627212(+)$1	275	54	57	9.0000
4ee	chr12:57031949-57032218(-)$1	269	47	50	9.0000
ggg	chr2:232577061-232577327(+)$1	266	62	65	9.0000
ooo	chr7:99751475-99751733(+)$1	258	14	17	9.0000
EEE	chrX:47073643-47073917(+)$1	274	0	3	9.0000
fff	chr15:44085146-44085374(+)$1	228	166	169	9.0000
lee	chr11:60658115-60658381(-)$1	266	26	29	9.0000
fff	chr1:156280252-156280538(-)$1	286	88	91	9.0000
ccc	chr15:78841078-78841389(+)$1	311	53	56	9.0000
ddd	chr6:33258396-33258693(+)$1	297	213	216	9.0000
fff	chr12:6879052-6879265(+)$1	213	22	25	9.0000
ccf	chr10:105151912-105152140(-)$1	228	59	62	9.0000
ggg	chr9:100774628-100774854(+)$1	226	32	35	9.0000
ddd	chr2:232576502-232576753(+)$1	251	13	16	9.0000
ggg	chr10:106026953-106027276(+)$1	323	87	90	9.0000
:::	chr2:70515098-70515363(-)$1	265	49	52	9.0000
ddd	chr6:34211167-34211395(+)$1	228	14	17	9.0000
ccc	chr9:130931229-130931515(-)$1	286	28	31	9.0000
:DD	chr11:5290797-5291006(-)$1	209	0	3	9.0000
:::	chrX:119007179-119007452(+)$1	273	0	3	9.0000
FFF	chr19:50000350-50000564(+)$1	214	7	10	9.0000
:::	chr19:13054502-13054752(+)$1	250	244	247	9.0000
EKK	chr6:33243702-33243912(+)$1	210	24	27	9.0000
JJJ	chr11:67379744-67380053(+)$1	309	24	27	9.0000
###	chr3:122128548-122128869(+)$1	321	145	148	9.0000

#DB
...	chr7:99063633-99063889(-)$1	1	55	58	9.0000
(((	chrX:70518218-70518456(+)$1	1	31	34	9.0000
...	chr5:149827194-149827398(-)$1	1	52	55	9.0000
(((	chr20:34287455-34287702(+)$1	1	15	18	9.0000
.))	chr7:99056760-99056986(-)$1	1	163	166	9.0000
.((	chr19:40330983-40331254(-)$1	1	5	8	9.0000
)))	chr19:50921094-50921365(+)$1	1	51	54	9.0000
...	chr19:5691462-5691706(+)$1	1	7	10	9.0000
(((	chr6:31605254-31605502(+)$1	1	7	10	9.0000
.((	chr19:46190806-46191088(-)$1	1	17	20	9.0000
.))	chr17:1553852-1554106(-)$1	1	90	93	9.0000
)))	chr19:36142034-36142265(+)$1	1	36	39	9.0000
(((	chr2:98263433-98263678(+)$1	1	97	100	9.0000
(((	chr21:35275677-35275971(-)$1	1	44	47	9.0000
(((	chr9:127623676-127623926(-)$1	1	1	4	9.0000
(((	chr1:46083631-46083944(+)$1	1	0	3	9.0000
((.	chrX:119010376-119010594(+)$1	1	26	29	9.0000
)))	chr16:29708525-29708917(+)$1	1	40	43	9.0000
((.	chr19:18652545-18652802(-)$1	1	23	26	9.0000
(((	chr11:64084639-64084878(-)$1	1	66	69	9.0000
(((	chr14:23566985-23567327(+)$1	1	14	17	9.0000
(((	chr12:56511165-56511393(+)$1	1	24	27	9.0000
)))	chr11:18425138-18425353(+)$1	1	61	64	9.0000
(((	chrX:118923871-118924074(-)$1	1	22	25	9.0000
.((	chr22:24964003-24964245(+)$1	1	13	16	9.0000
).)	chr6:75949916-75950174(-)$1	1	20	23	9.0000
)..	chr19:38746677-38746956(-)$1	1	125	128	9.0000
.((	chr18:9124770-9125049(+)$1	1	70	73	9.0000
)))	chr1:52256476-52256759(-)$1	1	203	206	9.0000
.((	chr1:40535732-40536001(+)$1	1	1	4	9.0000
.))	chr19:36145430-36145673(+)$1	1	13	16	9.0000
)))	chr7:26232770-26233015(-)$1	1	29	32	9.0000
(((	chr4:57325490-57325754(+)$1	1	51	54	9.0000
.((	chr1:113245096-113245363(-)$1	1	11	14	9.0000
((.	chr11:18428625-18428886(+)$1	1	87	90	9.0000
((.	chr19:7695608-7695833(+)$1	1	4	7	9.0000
..)	chr17:39680112-39680351(-)$1	1	27	30	9.0000
(((	chr11:64084466-64084717(-)$1	1	81	84	9.0000
(.(	chr2:232576553-232576793(+)$1	1	3	6	9.0000
(((	chr2:98263478-98263704(+)$1	1	52	55	9.0000
...	chr16:70286478-70286751(-)$1	1	0	3	9.0000
...	chr1:24021051-24021276(+)$1	1	1	4	9.0000
(((	chr9:140446836-140447080(+)$1	1	37	40	9.0000
(((	chr2:198365044-198365263(+)$1	1	1	4	9.0000
.((	chr12:56552366-56552596(+)$1	1	6	9	9.0000
(((	chr16:723952-724206(+)$1	1	14	17	9.0000
..)	chr5:179155491-179155696(+)$1	1	21	24	9.0000
...	chr14:92583741-92584052(-)$1	1	72	75	9.0000
(..	chr1:151374192-151374487(+)$1	1	8	11	9.0000
.((	chr1:45976935-45977183(-)$1	1	23	26	9.0000
).)	chr16:21994357-21994651(+)$1	1	71	74	9.0000
(((	chr2:98263706-98263916(+)$1	1	22	25	9.0000
)))	chr12:6647174-6647403(+)$1	1	10	13	9.0000
(((	chr14:23495146-23495414(-)$1	1	47	50	9.0000
...	chr16:31202322-31202532(+)$1	1	40	43	9.0000
(.(	chr16:202819-203051(+)$1	1	19	22	9.0000
(((	chr2:70520677-70520943(-)$1	1	51	54	9.0000
(((	chr7:99057635-99057893(-)$1	1	4	7	9.0000
(((	chr3:150262133-150262387(-)$1	1	11	14	9.0000
(.(	chr3:184052576-184052888(+)$1	1	6	9	9.0000
.((	chr16:417604-417883(-)$1	1	14	17	9.0000
(((	chr2:101622707-101622978(+)$1	1	6	9	9.0000
...	chr20:2448295-2448504(-)$1	1	0	3	9.0000
(.(	chr6:33243641-33243845(+)$1	1	39	42	9.0000
)))	chr1:1309285-1309533(-)$1	1	92	95	9.0000
...	chr5:159849261-159849510(+)$1	1	59	62	9.0000
..)	chrX:49453959-49454202(-)$1	1	102	105	9.0000
)))	chr11:5291012-5291219(-)$1	1	92	95	9.0000
((.	chrX:71492374-71492647(-)$1	1	37	40	9.0000
.((	chr7:99689303-99689594(+)$1	1	130	133	9.0000
(((	chr17:27076851-27077133(+)$1	1	12	15	9.0000
(((	chrX:118925435-118925642(-)$1	1	75	78	9.0000
...	chr6:33384423-33384653(-)$1	1	12	15	9.0000
((.	chrX:77160606-77160924(+)$1	1	34	37	9.0000
(.(	chr1:45480907-45481152(+)$1	1	64	67	9.0000
)))	chr19:19626937-19627212(+)$1	1	54	57	9.0000
.))	chr12:57031949-57032218(-)$1	1	47	50	9.0000
)))	chr2:232577061-232577327(+)$1	1	62	65	9.0000
...	chr7:99751475-99751733(+)$1	1	14	17	9.0000
(((	chrX:47073643-47073917(+)$1	1	0	3	9.0000
)))	chr15:44085146-44085374(+)$1	1	166	169	9.0000
.))	chr11:60658115-60658381(-)$1	1	26	29	9.0000
)))	chr1:156280252-156280538(-)$1	1	88	91	9.0000
(((	chr15:78841078-78841389(+)$1	1	53	56	9.0000
)))	chr6:33258396-33258693(+)$1	1	213	216	9.0000
(((	chr12:6879052-6879265(+)$1	1	22	25	9.0000
))(	chr10:105151912-105152140(-)$1	1	59	62	9.0000
(((	chr9:100774628-100774854(+)$1	1	32	35	9.0000
(((	chr2:232576502-232576753(+)$1	1	13	16	9.0000
(((	chr10:106026953-106027276(+)$1	1	87	90	9.0000
...	chr2:70515098-70515363(-)$1	1	49	52	9.0000
)))	chr6:34211167-34211395(+)$1	1	14	17	9.0000
(((	chr9:130931229-130931515(-)$1	1	28	31	9.0000
.((	chr11:5290797-5291006(-)$1	1	0	3	9.0000
...	chrX:119007179-119007452(+)$1	1	0	3	9.0000
(((	chr19:50000350-50000564(+)$1	1	7	10	9.0000
...	chr19:13054502-13054752(+)$1	1	244	247	9.0000
(..	chr6:33243702-33243912(+)$1	1	24	27	9.0000
(((	chr11:67379744-67380053(+)$1	1	24	27	9.0000
...	chr3:122128548-122128869(+)$1	1	145	148	9.0000

#PSSM
U : 0.99	u : 0.01	
G : 0.99	g : 0.01	
G : 0.99	g : 0.01	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_UTR_m2_run1.nuc.txt

#NT
GGGGAGGAGG	chr11:62312997-62313300(-)$1	303	97	107	17.9245
GGGGCGGGAG	chr2:171571846-171572106(+)$1	260	246	256	21.8867
GGGGCCGGGG	chr16:71879800-71880080(+)$1	280	125	135	20.0943
GGGGCGGGGG	chr11:66384403-66384671(+)$1	268	145	155	24.4339
GGGGAGGGAG	chr13:114144500-114144866(-)$1	366	355	365	19.7169
ggggcggggg	chr2:242447649-242447911(-)$1	262	142	152	24.4339
GGUGCGGGGG	chr5:179248459-179248716(+)$1	257	172	182	20.0943
GGGGCGGGAG	chr14:100704557-100704866(-)$1	309	90	100	21.8867
GGGGCGGGGU	chr16:89767473-89767844(-)$1	371	86	96	19.7169
GGGGAGGGGG	chr16:88718604-88718819(-)$1	215	125	135	22.2641
GGGGUGGGUG	chr7:150779610-150779921(-)$1	311	112	122	18.2075
GGGGCGGGGG	chr12:7311369-7311591(+)$1	222	94	104	24.4339
GGGGCGGCGG	chr7:5085618-5085922(+)$1	304	139	149	20.1886
GGGACGGGGG	chr6:33257347-33257643(+)$1	296	135	145	19.8113
GGGGCGGGAG	chr2:62933039-62933258(+)$1	219	158	168	21.8867
GGGGCGUGGG	chr8:134308644-134309022(-)$1	378	172	182	19.9056
GGGGUGGGGG	chr13:113976974-113977287(+)$1	313	33	43	21.3207
ggggagggag	chr7:100136791-100137069(+)$1	278	159	169	19.7169
GGGUCGGGGG	chr15:41046913-41047259(-)$1	346	17	27	19.8113
ggggcggcgg	chr14:23790708-23790915(+)$1	207	32	42	20.1886
GGGGAGGGUG	chr12:56632339-56632603(-)$1	264	253	263	19.1509
GGGGAGGAGG	chr19:56599227-56599473(-)$1	246	7	17	17.9245
CGGGCGGGGG	chr15:52971301-52971587(-)$1	286	137	147	19.6226
GGGGCGGGAG	chr2:62933058-62933275(+)$1	217	139	149	21.8867
gggccggggg	chr1:1284463-1284760(-)$1	297	81	91	19.8113
GGGGCGGGAG	chr19:18548390-18548628(-)$1	238	223	233	21.8867
ggggcugggg	chr16:69419584-69419887(-)$1	303	237	247	20.4716
GGAGCGGGGG	chr1:155532157-155532423(-)$1	266	64	74	20.0943
GGGGAGGGUG	chrX:54835503-54835777(+)$1	274	43	53	19.1509
GGGGUGGGGG	chr12:49351022-49351363(-)$1	341	77	87	21.3207
ggggcgggAG	chr3:128840278-128840550(-)$1	272	21	31	21.8867
GGAGCGGGGG	chr15:74702029-74702291(-)$1	262	43	53	20.0943
gggggggggg	chr19:42788617-42788879(+)$1	262	102	112	21.1320
GGGGCUGGGG	chr12:132413959-132414215(+)$1	256	151	161	20.4716
ggcgcggggg	chr17:7142609-7142906(-)$1	297	102	112	20.0000
GGGGCGUGGG	chr17:46131877-46132114(+)$1	237	136	146	19.9056
GGGGCGGGAG	chr19:45650350-45650600(+)$1	250	3	13	21.8867
GGUGCGGGGG	chr11:208952-209282(+)$1	330	107	117	20.0943
ggggcggggc	chr19:2096710-2096986(+)$1	276	95	105	19.7169
GGGGAGGGGG	chr17:41622966-41623250(+)$1	284	76	86	22.2641
ggggcggcgg	chr14:23790723-23790930(+)$1	207	17	27	20.1886
ggggagggag	chr2:159313598-159313829(+)$1	231	3	13	19.7169
GGGGCGGGCG	chr6:41748359-41748658(+)$1	299	43	53	21.1320
GAGGCGGGGG	chr2:118845944-118846199(+)$1	255	164	174	19.6226
ggggcugggg	chr19:1585174-1585436(-)$1	262	55	65	20.4716
GGGGCGGGGG	chr6:117996576-117996870(+)$1	294	145	155	24.4339
GGGGAUGGGG	chr14:105259206-105259530(-)$1	324	92	102	18.3018
ggggagggcg	chr18:72920997-72921274(-)$1	277	130	140	18.9622
GGGGCGGGUG	chr2:191513800-191514042(+)$1	242	76	86	21.3207
ggggcggggg	chr3:197024742-197025010(-)$1	268	242	252	24.4339
GGGGCUGGGG	chr2:209118851-209119147(-)$1	296	31	41	20.4716
GGGGAGAGGG	chr22:18573442-18573713(+)$1	271	102	112	17.6415

#otherMatches

#Struct PSSM
c]eeeeefff	chr11:868593-868838(-)$1	245	177	187	22.2641
cc333bb:::	chr11:62312997-62313300(-)$1	303	97	107	17.9245
hhccc:::::	chr2:171571846-171572106(+)$1	260	246	256	21.8867
c"""iiiiii	chr16:71879800-71880080(+)$1	280	125	135	20.0943
i]dddd]a]b	chr11:66384403-66384671(+)$1	268	145	155	24.4339
::::::::::	chr13:114144500-114144866(-)$1	366	355	365	19.7169
dd[bbmmmmb	chr2:242447649-242447911(-)$1	262	142	152	24.4339
mdddd22a22	chr5:179248459-179248716(+)$1	257	172	182	20.0943
B{HHHHHHHH	chr14:100704557-100704866(-)$1	309	90	100	21.8867
=====bb[ii	chr16:89767473-89767844(-)$1	371	86	96	19.7169
crrrrrrrrr	chr16:88718604-88718819(-)$1	215	125	135	22.2641
oooooeeeee	chr7:150779610-150779921(-)$1	311	112	122	18.2075
fff[dddd[d	chr12:7311369-7311591(+)$1	222	94	104	24.4339
ccc[bb[fff	chr7:5085618-5085922(+)$1	304	139	149	20.1886
ffffffffff	chr6:33257347-33257643(+)$1	296	135	145	19.8113
3dddd22ddd	chr2:62933039-62933258(+)$1	219	158	168	21.8867
LLLEEEEEKK	chr8:134308644-134309022(-)$1	378	172	182	19.9056
d[eeeeennn	chr13:113976974-113977287(+)$1	313	33	43	21.3207
[a"""ccc!!	chr7:100136791-100137069(+)$1	278	159	169	19.7169
DDD{DDDDEE	chr15:41046913-41047259(-)$1	346	17	27	19.8113
DDDHHHHHHH	chr14:23790708-23790915(+)$1	207	32	42	20.1886
I}A:::::::	chr12:56632339-56632603(-)$1	264	253	263	19.1509
II{A{BB{CC	chr19:56599227-56599473(-)$1	246	7	17	17.9245
eeeeeppppp	chr15:52971301-52971587(-)$1	286	137	147	19.6226
:dddd!!ddd	chr2:62933058-62933275(+)$1	217	139	149	21.8867
==[ccc[a[c	chr1:1284463-1284760(-)$1	297	81	91	19.8113
IIICCCCCC}	chr19:18548390-18548628(-)$1	238	223	233	21.8867
}GGGGGGGHH	chr16:69419584-69419887(-)$1	303	237	247	20.4716
GGGGGGG{BB	chr1:155532157-155532423(-)$1	266	64	74	20.0943
ffffffhhhh	chrX:54835503-54835777(+)$1	274	43	53	19.1509
mma]a]gggg	chr12:49351022-49351363(-)$1	341	77	87	21.3207
D{CCCEEEEE	chr3:128840278-128840550(-)$1	272	21	31	21.8867
mmccc55555	chr15:74702029-74702291(-)$1	262	43	53	20.0943
E{HHHHHHHH	chr19:42788617-42788879(+)$1	262	102	112	21.1320
bb[dddd[cc	chr12:132413959-132414215(+)$1	256	151	161	20.4716
gggggggccc	chr17:7142609-7142906(-)$1	297	102	112	20.0000
DYYJJJJJJJ	chr17:46131877-46132114(+)$1	237	136	146	19.9056
{BB{ALLLHH	chr19:45650350-45650600(+)$1	250	3	13	21.8867
HHHHHHHH{C	chr11:208952-209282(+)$1	330	107	117	20.0943
{BB{A::eee	chr19:2096710-2096986(+)$1	276	95	105	19.7169
b:ccc[bb[a	chr17:41622966-41623250(+)$1	284	76	86	22.2641
FFFFFF::ee	chr14:23790723-23790930(+)$1	207	17	27	20.1886
EEEEEEEEgg	chr2:159313598-159313829(+)$1	231	3	13	19.7169
=======]ff	chr6:41748359-41748658(+)$1	299	43	53	21.1320
!!a[a[a[a[	chr2:118845944-118846199(+)$1	255	164	174	19.6226
EEEEE{EEEE	chr19:1585174-1585436(-)$1	262	55	65	20.4716
a[ccc####f	chr6:117996576-117996870(+)$1	294	145	155	24.4339
55555ccc:a	chr14:105259206-105259530(-)$1	324	92	102	18.3018
DDDKKBB{A{	chr18:72920997-72921274(-)$1	277	130	140	18.9622
]ddddadddd	chr2:191513800-191514042(+)$1	242	76	86	21.3207
ooooa]eeee	chr3:197024742-197025010(-)$1	268	242	252	24.4339
eeee[bbppp	chr2:209118851-209119147(-)$1	296	31	41	20.4716
]iiiiiiiii	chr22:18573442-18573713(+)$1	271	102	112	17.6415

#DB
).)))))(((	chr11:868593-868838(-)$1	1	177	187	22.2641
))...))...	chr11:62312997-62313300(-)$1	1	97	107	17.9245
))))).....	chr2:171571846-171572106(+)$1	1	246	256	21.8867
(...((((((	chr16:71879800-71880080(+)$1	1	125	135	20.0943
).)))).).)	chr11:66384403-66384671(+)$1	1	145	155	24.4339
..........	chr13:114144500-114144866(-)$1	1	355	365	19.7169
((.((....)	chr2:242447649-242447911(-)$1	1	142	152	24.4339
.))))..)..	chr5:179248459-179248716(+)$1	1	172	182	20.0943
(.((((((((	chr14:100704557-100704866(-)$1	1	90	100	21.8867
)))))((.((	chr16:89767473-89767844(-)$1	1	86	96	19.7169
(.........	chr16:88718604-88718819(-)$1	1	125	135	22.2641
.....)))))	chr7:150779610-150779921(-)$1	1	112	122	18.2075
(((.((((.(	chr12:7311369-7311591(+)$1	1	94	104	24.4339
(((.((.(((	chr7:5085618-5085922(+)$1	1	139	149	20.1886
)))))(((((	chr6:33257347-33257643(+)$1	1	135	145	19.8113
.))))..)))	chr2:62933039-62933258(+)$1	1	158	168	21.8867
...(((((..	chr8:134308644-134309022(-)$1	1	172	182	19.9056
(.(((((...	chr13:113976974-113977287(+)$1	1	33	43	21.3207
.(...(((..	chr7:100136791-100137069(+)$1	1	159	169	19.7169
(((.((((((	chr15:41046913-41047259(-)$1	1	17	27	19.8113
((((((((((	chr14:23790708-23790915(+)$1	1	32	42	20.1886
).).......	chr12:56632339-56632603(-)$1	1	253	263	19.1509
((.(.((.((	chr19:56599227-56599473(-)$1	1	7	17	17.9245
(((((.....	chr15:52971301-52971587(-)$1	1	137	147	19.6226
.((((..(((	chr2:62933058-62933275(+)$1	1	139	149	21.8867
((.(((.(.(	chr1:1284463-1284760(-)$1	1	81	91	19.8113
))))))))).	chr19:18548390-18548628(-)$1	1	223	233	21.8867
.)))))))))	chr16:69419584-69419887(-)$1	1	237	247	20.4716
(((((((.((	chr1:155532157-155532423(-)$1	1	64	74	20.0943
))))))))))	chrX:54835503-54835777(+)$1	1	43	53	19.1509
..).).))))	chr12:49351022-49351363(-)$1	1	77	87	21.3207
(.((((((((	chr3:128840278-128840550(-)$1	1	21	31	21.8867
..))).....	chr15:74702029-74702291(-)$1	1	43	53	20.0943
(.((((((((	chr19:42788617-42788879(+)$1	1	102	112	21.1320
((.((((.((	chr12:132413959-132414215(+)$1	1	151	161	20.4716
)))))))(((	chr17:7142609-7142906(-)$1	1	102	112	20.0000
)..)))))))	chr17:46131877-46132114(+)$1	1	136	146	19.9056
.((.(...((	chr19:45650350-45650600(+)$1	1	3	13	21.8867
((((((((.(	chr11:208952-209282(+)$1	1	107	117	20.0943
.((.(..(((	chr19:2096710-2096986(+)$1	1	95	105	19.7169
).(((.((.(	chr17:41622966-41623250(+)$1	1	76	86	22.2641
((((((..((	chr14:23790723-23790930(+)$1	1	17	27	20.1886
((((((((((	chr2:159313598-159313829(+)$1	1	3	13	19.7169
))))))).))	chr6:41748359-41748658(+)$1	1	43	53	21.1320
..(.(.(.(.	chr2:118845944-118846199(+)$1	1	164	174	19.6226
(((((.((((	chr19:1585174-1585436(-)$1	1	55	65	20.4716
(.(((....(	chr6:117996576-117996870(+)$1	1	145	155	24.4339
.....))).(	chr14:105259206-105259530(-)$1	1	92	102	18.3018
(((..((.(.	chr18:72920997-72921274(-)$1	1	130	140	18.9622
.)))))))))	chr2:191513800-191514042(+)$1	1	76	86	21.3207
....).))))	chr3:197024742-197025010(-)$1	1	242	252	24.4339
((((.((...	chr2:209118851-209119147(-)$1	1	31	41	20.4716
.)))))))))	chr22:18573442-18573713(+)$1	1	102	112	17.6415

#PSSM
G : 0.71	g : 0.26	C : 0.01	
G : 0.71	g : 0.26	A : 0.01	
G : 0.66	g : 0.24	U : 0.03	A : 0.03	c : 0.01	
G : 0.69	g : 0.24	A : 0.01	U : 0.01	c : 0.01	
C : 0.49	A : 0.18	c : 0.18	U : 0.05	a : 0.05	g : 0.01	
G : 0.66	g : 0.22	U : 0.05	u : 0.03	C : 0.01	
G : 0.67	g : 0.26	U : 0.03	A : 0.01	
G : 0.67	g : 0.22	A : 0.03	c : 0.03	C : 0.01	
G : 0.50	g : 0.18	A : 0.15	U : 0.07	a : 0.03	C : 0.01	c : 0.01	
G : 0.73	g : 0.22	U : 0.01	c : 0.01	

#score	1095.660377358491
#seq	53
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_UTR_m1_run2.nuc.txt

#NT
AAAGAGAA	chr3:42679624-42679880(+)$1	256	44	52	15.9047
CAAGAAAA	chr17:40872297-40872571(-)$1	274	30	38	15.5873
AAUGAAAA	chr16:23646806-23647105(-)$1	299	256	264	15.3492
AGAGAAAA	chr16:30792789-30793045(-)$1	256	211	219	15.4285
AAAGAAGA	chr6:64395566-64395852(+)$1	286	77	85	15.1111
AAAGGAAA	chr6:64422321-64422575(+)$1	254	26	34	16.0634
AAAGAACA	chr9:79922788-79923112(+)$1	324	45	53	15.1904
AAAUAAAA	chr7:151859293-151859535(-)$1	242	219	227	15.6666
AAGGAAAA	chr12:30884194-30884500(-)$1	306	133	141	15.3492
AAAGAACA	chr7:99173310-99173565(+)$1	255	154	162	15.1904
AAAGAAAU	chr7:99631850-99632085(+)$1	235	46	54	15.6666
AAAUAAAA	chr15:34671332-34671591(-)$1	259	70	78	15.6666
AAAGGAAA	chr22:36906828-36907129(-)$1	301	17	25	16.0634
AAAGAGAA	chr3:42679061-42679310(+)$1	249	131	139	15.9047
GAAGAAAA	chr7:99632807-99633060(+)$1	253	204	212	16.1428
aaagaaaa	chr19:45166422-45166700(+)$1	278	96	104	19.7936
AAAGAAAC	chr17:42477774-42478016(-)$1	242	111	119	15.5079
AAAAAAAA	chr9:100777597-100777861(+)$1	264	187	195	15.5873
gaagaaaa	chr17:48815405-48815651(+)$1	246	95	103	16.1428
aaagaaaa	chr9:117073584-117073833(+)$1	249	227	235	19.7936
GAAGAAAA	chr7:99633756-99633991(+)$1	235	142	150	16.1428
GAAGAAAA	chr16:24801956-24802249(+)$1	293	90	98	16.1428
AAAGGAAA	chr6:146264570-146264843(-)$1	273	82	90	16.0634
GAAGAAAA	chr12:105531584-105531845(+)$1	261	33	41	16.1428
AAAGCAAA	chr3:42680752-42681025(+)$1	273	243	251	15.8253
aaagagaa	chr5:140085196-140085534(+)$1	338	25	33	15.9047
aaagaaaa	chr10:38409726-38410036(+)$1	310	257	265	19.7936
AAAGAAAU	chr4:2597774-2598139(+)$1	365	354	362	15.6666
AAAGAAAU	chr3:142751525-142751786(+)$1	261	16	24	15.6666
AAAGAAAA	chr13:97927825-97928089(+)$1	264	242	250	19.7936
AAAGAAAA	chr6:41751595-41751852(+)$1	257	226	234	19.7936
ACAGAAAA	chr17:66540278-66540534(+)$1	256	58	66	15.3492
AACGAAAA	chr4:40121994-40122215(+)$1	221	22	30	15.2698
AAAUAAAA	chr6:56392194-56392444(-)$1	250	217	225	15.6666
AAAGAGAA	chr7:5781077-5781359(-)$1	282	169	177	15.9047
AAAGAAAA	chr15:34817854-34818085(-)$1	231	209	217	19.7936
AAGGAAAA	chr21:40568861-40569179(-)$1	318	64	72	15.3492
AAAGAAAA	chr14:90870970-90871260(+)$1	290	164	172	19.7936
AAAGCAAA	chr17:37565183-37565475(-)$1	292	12	20	15.8253
AAAGAGAA	chr2:242034261-242034534(-)$1	273	112	120	15.9047
AAAGAGAA	chr19:21475865-21476119(-)$1	254	17	25	15.9047
GAAGAAAA	chr19:57803568-57803820(+)$1	252	113	121	16.1428
AAAGUAAA	chr19:36727221-36727519(+)$1	298	48	56	15.6666
AAAGAAAA	chr21:40568665-40568912(-)$1	247	45	53	19.7936
GAAGAAAA	chr17:65343160-65343467(-)$1	307	1	9	16.1428
AAAGAAAA	chr3:121409851-121410122(-)$1	271	96	104	19.7936
AAAGAAAG	chr6:56417930-56418167(-)$1	237	40	48	15.4285
AAAGGAAA	chr3:123649923-123650170(-)$1	247	147	155	16.0634
AAAGAAAU	chr16:4910605-4910906(+)$1	301	134	142	15.6666
acagaaaa	chr16:89726432-89726736(+)$1	304	1	9	15.3492
AAAAAAAA	chr4:762017-762275(-)$1	258	1	9	15.5873
AAAGGAAA	chr6:64422270-64422521(+)$1	251	77	85	16.0634
AGAGAAAA	chr1:203767971-203768206(+)$1	235	71	79	15.4285
AAAGAAAC	chr6:56966825-56967076(+)$1	251	240	248	15.5079
AAAGAAAA	chr16:89350300-89350663(-)$1	363	108	116	19.7936
AAUGAAAA	chr6:56437643-56437893(-)$1	250	79	87	15.3492
AAAAAAAA	chr7:99635695-99635947(+)$1	252	4	12	15.5873
AAAGGAAA	chr2:48026771-48027046(+)$1	275	142	150	16.0634
GAAGAAAA	chr3:27490042-27490282(-)$1	240	87	95	16.1428
AAAUAAAA	chr15:40913492-40913773(+)$1	281	46	54	15.6666
AAAGAGAA	chr1:203769046-203769342(+)$1	296	217	225	15.9047
AAAGCAAA	chr2:71654353-71654615(+)$1	262	32	40	15.8253

#otherMatches

#Struct PSSM
EE::::::	chr20:25655302-25655553(-)$1	251	53	61	15.4285
uuuuuuuu	chr3:42679624-42679880(+)$1	256	44	52	15.9047
>>>>>>>>	chr17:40872297-40872571(-)$1	274	30	38	15.5873
::::::::	chr16:23646806-23647105(-)$1	299	256	264	15.3492
qqqqqqqq	chr16:30792789-30793045(-)$1	256	211	219	15.4285
:::ggggg	chr6:64395566-64395852(+)$1	286	77	85	15.1111
::dddd!!	chr6:64422321-64422575(+)$1	254	26	34	16.0634
fffffnnn	chr9:79922788-79923112(+)$1	324	45	53	15.1904
meeeee::	chr7:151859293-151859535(-)$1	242	219	227	15.6666
:::::fff	chr12:30884194-30884500(-)$1	306	133	141	15.3492
sssssssg	chr7:99173310-99173565(+)$1	255	154	162	15.1904
::::::::	chr7:99631850-99632085(+)$1	235	46	54	15.6666
ffffnnnn	chr15:34671332-34671591(-)$1	259	70	78	15.6666
ssssssss	chr22:36906828-36907129(-)$1	301	17	25	16.0634
:::::ccc	chr3:42679061-42679310(+)$1	249	131	139	15.9047
pppppppb	chr7:99632807-99633060(+)$1	253	204	212	16.1428
cqqqqqqq	chr19:45166422-45166700(+)$1	278	96	104	19.7936
333ggggg	chr17:42477774-42478016(-)$1	242	111	119	15.5079
vvvvvvvv	chr9:100777597-100777861(+)$1	264	187	195	15.5873
c%%%%%%e	chr17:48815405-48815651(+)$1	246	95	103	16.1428
3eeeee::	chr9:117073584-117073833(+)$1	249	227	235	19.7936
b]eeeee:	chr7:99633756-99633991(+)$1	235	142	150	16.1428
>>>>>>>>	chr16:24801956-24802249(+)$1	293	90	98	16.1428
vvvdddd]	chr6:146264570-146264843(-)$1	273	82	90	16.0634
bb[ddddl	chr12:105531584-105531845(+)$1	261	33	41	16.1428
^^^^^^^^	chr3:42680752-42681025(+)$1	273	243	251	15.8253
++++++++	chr5:140085196-140085534(+)$1	338	25	33	15.9047
::::::::	chr10:38409726-38410036(+)$1	310	257	265	19.7936
HHHHHHH:	chr4:2597774-2598139(+)$1	365	354	362	15.6666
{DDDD:::	chr3:142751525-142751786(+)$1	261	16	24	15.6666
GGGG????	chr13:97927825-97928089(+)$1	264	242	250	19.7936
yyyyyyyy	chr6:41751595-41751852(+)$1	257	226	234	19.7936
7bb4444f	chr17:66540278-66540534(+)$1	256	58	66	15.3492
hhhhhhh!	chr4:40121994-40122215(+)$1	221	22	30	15.2698
e[cccmmm	chr6:56392194-56392444(-)$1	250	217	225	15.6666
cceeeee:	chr7:5781077-5781359(-)$1	282	169	177	15.9047
::::::::	chr15:34817854-34818085(-)$1	231	209	217	19.7936
ecccoooo	chr21:40568861-40569179(-)$1	318	64	72	15.3492
qdddd333	chr14:90870970-90871260(+)$1	290	164	172	19.7936
"""bbqqq	chr17:37565183-37565475(-)$1	292	12	20	15.8253
::eeeee!	chr2:242034261-242034534(-)$1	273	112	120	15.9047
D:::::::	chr19:21475865-21476119(-)$1	254	17	25	15.9047
gggg:::c	chr19:57803568-57803820(+)$1	252	113	121	16.1428
CC{BBLLL	chr19:36727221-36727519(+)$1	298	48	56	15.6666
lldddd33	chr21:40568665-40568912(-)$1	247	45	53	19.7936
:::GGGGG	chr17:65343160-65343467(-)$1	307	1	9	16.1428
hhh99999	chr3:121409851-121410122(-)$1	271	96	104	19.7936
::::::::	chr6:56417930-56418167(-)$1	237	40	48	15.4285
444ccc44	chr3:123649923-123650170(-)$1	247	147	155	16.0634
eeee::::	chr16:4910605-4910906(+)$1	301	134	142	15.6666
:::::fff	chr16:89726432-89726736(+)$1	304	1	9	15.3492
::::::::	chr4:762017-762275(-)$1	258	1	9	15.5873
tttttttc	chr6:64422270-64422521(+)$1	251	77	85	16.0634
EGGGGGGG	chr1:203767971-203768206(+)$1	235	71	79	15.4285
::::::::	chr6:56966825-56967076(+)$1	251	240	248	15.5079
fffff444	chr16:89350300-89350663(-)$1	363	108	116	19.7936
hhhwwwww	chr6:56437643-56437893(-)$1	250	79	87	15.3492
EEE:::::	chr7:99635695-99635947(+)$1	252	4	12	15.5873
:EEEEEMM	chr2:48026771-48027046(+)$1	275	142	150	16.0634
HHHHHHH:	chr3:27490042-27490282(-)$1	240	87	95	16.1428
eee&&&&&	chr15:40913492-40913773(+)$1	281	46	54	15.6666
nnnnn===	chr1:203769046-203769342(+)$1	296	217	225	15.9047
nnnbb:::	chr2:71654353-71654615(+)$1	262	32	40	15.8253

#DB
((......	chr20:25655302-25655553(-)$1	1	53	61	15.4285
........	chr3:42679624-42679880(+)$1	1	44	52	15.9047
........	chr17:40872297-40872571(-)$1	1	30	38	15.5873
........	chr16:23646806-23647105(-)$1	1	256	264	15.3492
........	chr16:30792789-30793045(-)$1	1	211	219	15.4285
...(((((	chr6:64395566-64395852(+)$1	1	77	85	15.1111
..((((..	chr6:64422321-64422575(+)$1	1	26	34	16.0634
(((((...	chr9:79922788-79923112(+)$1	1	45	53	15.1904
.)))))..	chr7:151859293-151859535(-)$1	1	219	227	15.6666
.....(((	chr12:30884194-30884500(-)$1	1	133	141	15.3492
.......)	chr7:99173310-99173565(+)$1	1	154	162	15.1904
........	chr7:99631850-99632085(+)$1	1	46	54	15.6666
((((....	chr15:34671332-34671591(-)$1	1	70	78	15.6666
........	chr22:36906828-36907129(-)$1	1	17	25	16.0634
.....(((	chr3:42679061-42679310(+)$1	1	131	139	15.9047
.......)	chr7:99632807-99633060(+)$1	1	204	212	16.1428
(.......	chr19:45166422-45166700(+)$1	1	96	104	19.7936
...)))))	chr17:42477774-42478016(-)$1	1	111	119	15.5079
........	chr9:100777597-100777861(+)$1	1	187	195	15.5873
(......(	chr17:48815405-48815651(+)$1	1	95	103	16.1428
.)))))..	chr9:117073584-117073833(+)$1	1	227	235	19.7936
).))))).	chr7:99633756-99633991(+)$1	1	142	150	16.1428
........	chr16:24801956-24802249(+)$1	1	90	98	16.1428
...)))).	chr6:146264570-146264843(-)$1	1	82	90	16.0634
((.((((.	chr12:105531584-105531845(+)$1	1	33	41	16.1428
........	chr3:42680752-42681025(+)$1	1	243	251	15.8253
........	chr5:140085196-140085534(+)$1	1	25	33	15.9047
........	chr10:38409726-38410036(+)$1	1	257	265	19.7936
))))))).	chr4:2597774-2598139(+)$1	1	354	362	15.6666
.((((...	chr3:142751525-142751786(+)$1	1	16	24	15.6666
))))....	chr13:97927825-97928089(+)$1	1	242	250	19.7936
........	chr6:41751595-41751852(+)$1	1	226	234	19.7936
.))....)	chr17:66540278-66540534(+)$1	1	58	66	15.3492
(((((((.	chr4:40121994-40122215(+)$1	1	22	30	15.2698
(.(((...	chr6:56392194-56392444(-)$1	1	217	225	15.6666
))))))).	chr7:5781077-5781359(-)$1	1	169	177	15.9047
........	chr15:34817854-34818085(-)$1	1	209	217	19.7936
((((....	chr21:40568861-40569179(-)$1	1	64	72	15.3492
.))))...	chr14:90870970-90871260(+)$1	1	164	172	19.7936
...((...	chr17:37565183-37565475(-)$1	1	12	20	15.8253
..(((((.	chr2:242034261-242034534(-)$1	1	112	120	15.9047
(.......	chr19:21475865-21476119(-)$1	1	17	25	15.9047
))))...(	chr19:57803568-57803820(+)$1	1	113	121	16.1428
((.((...	chr19:36727221-36727519(+)$1	1	48	56	15.6666
..))))..	chr21:40568665-40568912(-)$1	1	45	53	19.7936
...(((((	chr17:65343160-65343467(-)$1	1	1	9	16.1428
))).....	chr3:121409851-121410122(-)$1	1	96	104	19.7936
........	chr6:56417930-56418167(-)$1	1	40	48	15.4285
...)))..	chr3:123649923-123650170(-)$1	1	147	155	16.0634
))))....	chr16:4910605-4910906(+)$1	1	134	142	15.6666
.....(((	chr16:89726432-89726736(+)$1	1	1	9	15.3492
........	chr4:762017-762275(-)$1	1	1	9	15.5873
.......)	chr6:64422270-64422521(+)$1	1	77	85	16.0634
((((((((	chr1:203767971-203768206(+)$1	1	71	79	15.4285
........	chr6:56966825-56967076(+)$1	1	240	248	15.5079
)))))...	chr16:89350300-89350663(-)$1	1	108	116	19.7936
(((.....	chr6:56437643-56437893(-)$1	1	79	87	15.3492
(((.....	chr7:99635695-99635947(+)$1	1	4	12	15.5873
.(((((..	chr2:48026771-48027046(+)$1	1	142	150	16.0634
(((((((.	chr3:27490042-27490282(-)$1	1	87	95	16.1428
(((.....	chr15:40913492-40913773(+)$1	1	46	54	15.6666
.....)))	chr1:203769046-203769342(+)$1	1	217	225	15.9047
...))...	chr2:71654353-71654615(+)$1	1	32	40	15.8253

#PSSM
A : 0.77	G : 0.11	a : 0.07	C : 0.01	g : 0.01	
A : 0.84	a : 0.07	G : 0.04	C : 0.01	c : 0.01	
A : 0.82	a : 0.09	U : 0.03	G : 0.03	C : 0.01	
G : 0.79	g : 0.09	U : 0.06	A : 0.04	
A : 0.74	G : 0.09	a : 0.09	C : 0.04	U : 0.01	
A : 0.80	G : 0.09	a : 0.07	g : 0.01	
A : 0.85	a : 0.09	C : 0.03	G : 0.01	
A : 0.79	a : 0.09	U : 0.06	C : 0.03	G : 0.01	

#score	1031.2063492063482
#seq	63
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_UTR_m3_run2.nuc.txt

#NT
CUGGG	chr4:2513588-2513860(+)$1	272	129	134	14.9999
CUGGG	chr1:249151732-249152005(-)$1	273	128	133	14.9999
CUGGG	chr20:31115565-31115871(-)$1	306	285	290	14.9999
CUGGG	chr11:57193206-57193459(-)$1	253	135	140	14.9999
CUGGG	chr16:28969882-28970183(+)$1	301	97	102	14.9999
CUGGG	chr19:54971462-54971685(+)$1	223	112	117	14.9999
CUGGG	chr1:43142102-43142363(+)$1	261	56	61	14.9999
CUGGG	chr20:62331466-62331709(-)$1	243	184	189	14.9999
CUGGG	chr1:161140259-161140532(+)$1	273	156	161	14.9999
CUGGG	chr17:17717603-17717900(-)$1	297	27	32	14.9999
CUggg	chr17:79479452-79479706(-)$1	254	90	95	14.9999
CUGGG	chr11:122929965-122930174(-)$1	209	158	163	14.9999
cuggg	chr19:1883581-1883827(-)$1	246	50	55	14.9999
CUGGG	chr12:57917648-57917935(+)$1	287	96	101	14.9999
CUGGG	chr2:54197793-54198038(-)$1	245	109	114	14.9999
CUGGG	chr9:139562549-139562798(+)$1	249	54	59	14.9999
CUGGG	chr11:129762629-129762906(-)$1	277	252	257	14.9999
CUGGG	chr8:144674989-144675259(-)$1	270	238	243	14.9999
cuggg	chr7:150774381-150774657(-)$1	276	61	66	14.9999
CUGGG	chr16:66930-67217(-)$1	287	39	44	14.9999
CUGGG	chr19:7997705-7997974(-)$1	269	246	251	14.9999
CUGGG	chr16:89789526-89789799(+)$1	273	61	66	14.9999
CUGGG	chr17:7123938-7124188(+)$1	250	79	84	14.9999
cuggg	chr19:1883189-1883431(-)$1	242	95	100	14.9999
CUGGG	chr17:8076646-8076875(-)$1	229	177	182	14.9999
CUGGG	chr11:64535630-64535884(-)$1	254	196	201	14.9999
CUGGG	chr11:9166522-9166814(-)$1	292	203	208	14.9999
CUGGG	chr19:798364-798622(+)$1	258	3	8	14.9999
CUGGG	chr16:277213-277493(-)$1	280	245	250	14.9999
CUGGG	chr7:73101009-73101282(+)$1	273	60	65	14.9999
CUGGG	chr3:128211744-128211993(+)$1	249	49	54	14.9999
CUGGG	chr17:48453257-48453569(+)$1	312	283	288	14.9999
CUGGG	chr12:125398881-125399141(-)$1	260	24	29	14.9999
CUGGG	chr11:122929959-122930161(-)$1	202	145	150	14.9999
CUGGG	chr19:19738210-19738465(-)$1	255	74	79	14.9999
CUGGG	chr3:12881709-12881955(-)$1	246	12	17	14.9999
CUGGG	chr8:41513125-41513417(-)$1	292	17	22	14.9999
CUGGG	chr22:50018148-50018375(-)$1	227	52	57	14.9999
CUGGG	chr16:1370679-1370937(+)$1	258	129	134	14.9999
CUGGG	chr17:17131327-17131644(-)$1	317	6	11	14.9999
CUGGG	chr19:49993175-49993384(+)$1	209	0	5	14.9999
CUGGG	chr7:1887647-1887894(-)$1	247	68	73	14.9999
CUGGG	chr1:155650066-155650322(-)$1	256	239	244	14.9999
cuggg	chr8:30669816-30670086(-)$1	270	114	119	14.9999
CUGGG	chr11:122929984-122930187(-)$1	203	171	176	14.9999
cuggg	chr16:89023962-89024207(-)$1	245	64	69	14.9999
CUGGG	chr8:23425710-23425988(+)$1	278	40	45	14.9999
CUGGG	chr17:27073831-27074078(+)$1	247	117	122	14.9999
CUGGG	chr19:1274190-1274440(+)$1	250	171	176	14.9999
CUGGG	chr15:91445995-91446248(+)$1	253	174	179	14.9999
CUGGG	chr11:122929974-122930184(-)$1	210	168	173	14.9999
CUGGG	chr17:80054216-80054483(-)$1	267	83	88	14.9999
CUGGG	chr22:26922114-26922381(-)$1	267	12	17	14.9999
CUGGG	chr8:144520096-144520402(-)$1	306	89	94	14.9999
CUGGG	chr17:79479291-79479565(-)$1	274	71	76	14.9999
CUGGG	chr2:232574426-232574774(+)$1	348	23	28	14.9999
CUGGG	chr3:50140361-50140658(+)$1	297	94	99	14.9999
CUGGG	chr15:34651805-34652098(-)$1	293	230	235	14.9999
CUGGG	chr19:1474638-1474914(-)$1	276	20	25	14.9999
cuggg	chr11:66133906-66134214(-)$1	308	2	7	14.9999
CUGGG	chr16:4664263-4664499(-)$1	236	189	194	14.9999
CUGGG	chr7:100484276-100484542(+)$1	266	220	225	14.9999
CUGGG	chr2:97534054-97534315(-)$1	261	21	26	14.9999
CUGGG	chr16:1361830-1362077(+)$1	247	32	37	14.9999

#otherMatches

#Struct PSSM
EEEMM	chr12:122238112-122238351(-)$1	239	18	23	14.9999
ggg::	chr4:2513588-2513860(+)$1	272	129	134	14.9999
ccc:D	chr1:249151732-249152005(-)$1	273	128	133	14.9999
hhhhh	chr20:31115565-31115871(-)$1	306	285	290	14.9999
qqqqq	chr11:57193206-57193459(-)$1	253	135	140	14.9999
iiiii	chr16:28969882-28970183(+)$1	301	97	102	14.9999
eeeee	chr19:54971462-54971685(+)$1	223	112	117	14.9999
iiiii	chr1:43142102-43142363(+)$1	261	56	61	14.9999
ccc]h	chr20:62331466-62331709(-)$1	243	184	189	14.9999
bbfff	chr1:161140259-161140532(+)$1	273	156	161	14.9999
ffff#	chr17:17717603-17717900(-)$1	297	27	32	14.9999
dd[ee	chr17:79479452-79479706(-)$1	254	90	95	14.9999
nccc]	chr11:122929965-122930174(-)$1	209	158	163	14.9999
ee!!d	chr19:1883581-1883827(-)$1	246	50	55	14.9999
cccff	chr12:57917648-57917935(+)$1	287	96	101	14.9999
ee]a]	chr2:54197793-54198038(-)$1	245	109	114	14.9999
eeeed	chr9:139562549-139562798(+)$1	249	54	59	14.9999
e22a:	chr11:129762629-129762906(-)$1	277	252	257	14.9999
irrrr	chr8:144674989-144675259(-)$1	270	238	243	14.9999
fffff	chr7:150774381-150774657(-)$1	276	61	66	14.9999
FFFFF	chr16:66930-67217(-)$1	287	39	44	14.9999
G:fff	chr19:7997705-7997974(-)$1	269	246	251	14.9999
qqqqb	chr16:89789526-89789799(+)$1	273	61	66	14.9999
eeee[	chr17:7123938-7124188(+)$1	250	79	84	14.9999
eeeee	chr19:1883189-1883431(-)$1	242	95	100	14.9999
2bbee	chr17:8076646-8076875(-)$1	229	177	182	14.9999
::eee	chr11:64535630-64535884(-)$1	254	196	201	14.9999
ggggg	chr11:9166522-9166814(-)$1	292	203	208	14.9999
c[eee	chr19:798364-798622(+)$1	258	3	8	14.9999
aoooo	chr16:277213-277493(-)$1	280	245	250	14.9999
ee22c	chr7:73101009-73101282(+)$1	273	60	65	14.9999
cc###	chr3:128211744-128211993(+)$1	249	49	54	14.9999
CCC:c	chr17:48453257-48453569(+)$1	312	283	288	14.9999
FF{A{	chr12:125398881-125399141(-)$1	260	24	29	14.9999
nccc]	chr11:122929959-122930161(-)$1	202	145	150	14.9999
FFFFF	chr19:19738210-19738465(-)$1	255	74	79	14.9999
ff###	chr3:12881709-12881955(-)$1	246	12	17	14.9999
bb[ff	chr8:41513125-41513417(-)$1	292	17	22	14.9999
iiigg	chr22:50018148-50018375(-)$1	227	52	57	14.9999
dd:hh	chr16:1370679-1370937(+)$1	258	129	134	14.9999
fffqq	chr17:17131327-17131644(-)$1	317	6	11	14.9999
:::CC	chr19:49993175-49993384(+)$1	209	0	5	14.9999
iiiii	chr7:1887647-1887894(-)$1	247	68	73	14.9999
CCC}F	chr1:155650066-155650322(-)$1	256	239	244	14.9999
:CCCK	chr8:30669816-30670086(-)$1	270	114	119	14.9999
nccc]	chr11:122929984-122930187(-)$1	203	171	176	14.9999
%%ccc	chr16:89023962-89024207(-)$1	245	64	69	14.9999
cccgg	chr8:23425710-23425988(+)$1	278	40	45	14.9999
IIIII	chr17:27073831-27074078(+)$1	247	117	122	14.9999
dd]hh	chr19:1274190-1274440(+)$1	250	171	176	14.9999
ccc[c	chr15:91445995-91446248(+)$1	253	174	179	14.9999
nccc]	chr11:122929974-122930184(-)$1	210	168	173	14.9999
EKKA{	chr17:80054216-80054483(-)$1	267	83	88	14.9999
BB{HH	chr22:26922114-26922381(-)$1	267	12	17	14.9999
JJJJB	chr8:144520096-144520402(-)$1	306	89	94	14.9999
CC{CC	chr17:79479291-79479565(-)$1	274	71	76	14.9999
!!ddd	chr2:232574426-232574774(+)$1	348	23	28	14.9999
:FFFF	chr3:50140361-50140658(+)$1	297	94	99	14.9999
CCccc	chr15:34651805-34652098(-)$1	293	230	235	14.9999
[ffff	chr19:1474638-1474914(-)$1	276	20	25	14.9999
dd[ff	chr11:66133906-66134214(-)$1	308	2	7	14.9999
ddddd	chr16:4664263-4664499(-)$1	236	189	194	14.9999
EEEEE	chr7:100484276-100484542(+)$1	266	220	225	14.9999
ccchh	chr2:97534054-97534315(-)$1	261	21	26	14.9999
ccc[d	chr16:1361830-1362077(+)$1	247	32	37	14.9999

#DB
(((..	chr12:122238112-122238351(-)$1	1	18	23	14.9999
)))..	chr4:2513588-2513860(+)$1	1	129	134	14.9999
))).)	chr1:249151732-249152005(-)$1	1	128	133	14.9999
)))))	chr20:31115565-31115871(-)$1	1	285	290	14.9999
.....	chr11:57193206-57193459(-)$1	1	135	140	14.9999
(((((	chr16:28969882-28970183(+)$1	1	97	102	14.9999
(((((	chr19:54971462-54971685(+)$1	1	112	117	14.9999
(((((	chr1:43142102-43142363(+)$1	1	56	61	14.9999
))).)	chr20:62331466-62331709(-)$1	1	184	189	14.9999
)))))	chr1:161140259-161140532(+)$1	1	156	161	14.9999
((((.	chr17:17717603-17717900(-)$1	1	27	32	14.9999
((.((	chr17:79479452-79479706(-)$1	1	90	95	14.9999
.))).	chr11:122929965-122930174(-)$1	1	158	163	14.9999
((..(	chr19:1883581-1883827(-)$1	1	50	55	14.9999
)))((	chr12:57917648-57917935(+)$1	1	96	101	14.9999
)).).	chr2:54197793-54198038(-)$1	1	109	114	14.9999
))))(	chr9:139562549-139562798(+)$1	1	54	59	14.9999
)..).	chr11:129762629-129762906(-)$1	1	252	257	14.9999
(....	chr8:144674989-144675259(-)$1	1	238	243	14.9999
(((((	chr7:150774381-150774657(-)$1	1	61	66	14.9999
(((((	chr16:66930-67217(-)$1	1	39	44	14.9999
).(((	chr19:7997705-7997974(-)$1	1	246	251	14.9999
....)	chr16:89789526-89789799(+)$1	1	61	66	14.9999
((((.	chr17:7123938-7124188(+)$1	1	79	84	14.9999
(((((	chr19:1883189-1883431(-)$1	1	95	100	14.9999
.))))	chr17:8076646-8076875(-)$1	1	177	182	14.9999
..(((	chr11:64535630-64535884(-)$1	1	196	201	14.9999
)))))	chr11:9166522-9166814(-)$1	1	203	208	14.9999
(.(((	chr19:798364-798622(+)$1	1	3	8	14.9999
(....	chr16:277213-277493(-)$1	1	245	250	14.9999
))..)	chr7:73101009-73101282(+)$1	1	60	65	14.9999
((...	chr3:128211744-128211993(+)$1	1	49	54	14.9999
))).(	chr17:48453257-48453569(+)$1	1	283	288	14.9999
((.(.	chr12:125398881-125399141(-)$1	1	24	29	14.9999
.))).	chr11:122929959-122930161(-)$1	1	145	150	14.9999
(((((	chr19:19738210-19738465(-)$1	1	74	79	14.9999
((...	chr3:12881709-12881955(-)$1	1	12	17	14.9999
((.((	chr8:41513125-41513417(-)$1	1	17	22	14.9999
)))))	chr22:50018148-50018375(-)$1	1	52	57	14.9999
)).((	chr16:1370679-1370937(+)$1	1	129	134	14.9999
(((..	chr17:17131327-17131644(-)$1	1	6	11	14.9999
...((	chr19:49993175-49993384(+)$1	1	0	5	14.9999
(((((	chr7:1887647-1887894(-)$1	1	68	73	14.9999
))).)	chr1:155650066-155650322(-)$1	1	239	244	14.9999
.(((.	chr8:30669816-30670086(-)$1	1	114	119	14.9999
.))).	chr11:122929984-122930187(-)$1	1	171	176	14.9999
..(((	chr16:89023962-89024207(-)$1	1	64	69	14.9999
)))))	chr8:23425710-23425988(+)$1	1	40	45	14.9999
(((((	chr17:27073831-27074078(+)$1	1	117	122	14.9999
)).))	chr19:1274190-1274440(+)$1	1	171	176	14.9999
(((.(	chr15:91445995-91446248(+)$1	1	174	179	14.9999
.))).	chr11:122929974-122930184(-)$1	1	168	173	14.9999
(..(.	chr17:80054216-80054483(-)$1	1	83	88	14.9999
((.((	chr22:26922114-26922381(-)$1	1	12	17	14.9999
(((((	chr8:144520096-144520402(-)$1	1	89	94	14.9999
((.((	chr17:79479291-79479565(-)$1	1	71	76	14.9999
..(((	chr2:232574426-232574774(+)$1	1	23	28	14.9999
.((((	chr3:50140361-50140658(+)$1	1	94	99	14.9999
))(((	chr15:34651805-34652098(-)$1	1	230	235	14.9999
.((((	chr19:1474638-1474914(-)$1	1	20	25	14.9999
((.((	chr11:66133906-66134214(-)$1	1	2	7	14.9999
)))))	chr16:4664263-4664499(-)$1	1	189	194	14.9999
)))))	chr7:100484276-100484542(+)$1	1	220	225	14.9999
)))))	chr2:97534054-97534315(-)$1	1	21	26	14.9999
(((.(	chr16:1361830-1362077(+)$1	1	32	37	14.9999

#PSSM
C : 0.90	c : 0.09	
U : 0.90	u : 0.09	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	

#score	974.9999999999995
#seq	65
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_UTR_m2_run1.nuc.txt

#NT
UUCUCUCCCUUUCU	chr14:24658521-24658824(-)$1	303	229	243	18.0185
AACUCUUUCCUUUU	chr12:49330395-49330684(-)$1	289	39	53	19.2222
uucucuuuucuucC	chr7:150758715-150759007(+)$1	292	131	145	23.5740
UCCUUUUUCCUUCC	chr3:38455373-38455650(+)$1	277	101	115	19.5925
UCCUCUUUCAUUCU	chr12:62990952-62991254(+)$1	302	137	151	21.9074
UUUUCUUUCCUAUU	chr14:75598587-75598842(-)$1	255	91	105	20.3333
UUCUCUUUCCUUCU	chr16:72819821-72820076(-)$1	255	102	116	29.5925
UACUCUUUCCUACC	chr11:6635096-6635445(-)$1	349	47	61	19.4999
UUCUUUUUCCUCCU	chr2:220047671-220047986(+)$1	315	16	30	22.8333
uucucuuuccuuuu	chr11:62566377-62566649(-)$1	272	7	21	26.6296
uuuucuuuccuucc	chr19:54377703-54377939(+)$1	236	178	192	23.9444
uucucuucccuccu	chr11:73685765-73686081(-)$1	316	103	117	23.2962
cuuucuuuccuuuu	chr7:96639487-96639710(+)$1	223	73	87	20.8888
GUCUGUUUCCUACU	chr12:113826534-113826897(+)$1	363	148	162	18.6666
UUCGCUUUCCUUCU	chr6:52367591-52367890(-)$1	299	42	56	25.4259
UUUUAUUUUCUUCU	chr1:110564277-110564525(+)$1	248	92	106	19.3148
uucuccuuccuCCU	chr2:105964418-105964630(+)$1	212	107	121	23.3888
uuuucuuuccuucC	chr12:65089692-65089963(+)$1	271	129	143	23.9444
UUCUCAUUCCUUCC	chr9:33111913-33112223(-)$1	310	124	138	22.8333
gccucuuuccuucc	chr2:240898928-240899282(-)$1	354	104	118	19.9629
ugcucuucccuuca	chr2:149449579-149449975(+)$1	396	67	81	18.5740
UUCUCUUUCCCUUU	chr19:50432034-50432281(-)$1	247	195	209	22.3703
UUAUCCUCCCUUCU	chr6:28123584-28123866(+)$1	282	119	133	19.4074
uucucuuucucucu	chr10:33467781-33468072(-)$1	291	115	129	21.5370
uucucuaccuuucu	chr1:52981245-52981547(-)$1	302	114	128	18.0185
UUCUCUUUUCUCUU	chr17:61670176-61670447(+)$1	271	96	110	20.4259
cugucucuccuucu	chr8:566463-566739(-)$1	276	89	103	18.9444
uucucuuaacuuuu	chr11:71808929-71809224(-)$1	295	37	51	18.7592
uuuucuuuccuucC	chr12:65089803-65090045(+)$1	242	18	32	23.9444
UUGUUUUUCUUUCU	chr4:114374722-114375030(-)$1	308	61	75	18.6666
cucucuuuccuccu	chr7:4306806-4307105(+)$1	299	103	117	23.7592
CUGUCUAUCCUUCU	chr14:23446701-23446958(-)$1	257	134	148	18.9444
cuccccuuccuucu	chr2:204308608-204308884(-)$1	276	94	108	19.2222
uucuccuuccuucu	chrX:79927758-79928020(-)$1	262	56	70	26.3518
ucuucuuuucuucu	chr1:214161494-214161749(+)$1	255	29	43	20.0555
CUCCCCUUCCUUCU	chr20:33298586-33298833(+)$1	247	97	111	19.2222
ucuucuuuucuucu	chr1:214161426-214161694(+)$1	268	97	111	20.0555
uucuucuuccuccu	chr16:2819099-2819363(+)$1	264	66	80	19.5925
UUCGCUUUCCUUCU	chr6:52367690-52367943(-)$1	253	95	109	25.4259
UUUACUUUCCUUUU	chr1:169101517-169101740(+)$1	223	88	102	19.4074
uucuccuuccuCCU	chr2:105964365-105964607(+)$1	242	160	174	23.3888
uucucuuuccuuuu	chr11:62566481-62566786(-)$1	305	144	158	26.6296
UUCUCUUACCCUUU	chr11:57558757-57559006(+)$1	249	77	91	18.4814
CUCGCUUUCUUUCU	chr6:32153790-32154015(-)$1	225	93	107	18.7592
cucucuucccuucc	chr16:58054434-58054836(+)$1	402	125	139	20.6111
UCCUGUUUCCUUCG	chr1:109816461-109816799(+)$1	338	84	98	18.3888
GCCUCCUUCCUUCU	chr6:36199418-36199670(+)$1	252	109	123	19.4999
uucuucuuccuccu	chr16:2819014-2819299(+)$1	285	151	165	19.5925
UUCUCUUUCCUCUC	chr14:77254282-77254582(-)$1	300	49	63	20.8888
UUCUCUUCUCUACU	chr17:57778102-57778399(-)$1	297	118	132	19.5925
cugucuuuucuucu	chrX:48925905-48926172(+)$1	267	111	125	20.1481
UUCUCUUCUCCUCU	chr14:24038494-24038826(-)$1	332	48	62	18.7592
aucucuuuuuuucu	chr17:78372369-78372677(-)$1	308	78	92	19.0370

#otherMatches

#Struct PSSM
^^^^^^^^^^^^^^	chr19:18280137-18280472(+)$1	335	113	127	26.8148
ddd>>>>>>>>>>>	chr14:24658521-24658824(-)$1	303	229	243	18.0185
::::::::::::::	chr12:49330395-49330684(-)$1	289	39	53	19.2222
^^^^^^^^^^^^^^	chr7:150758715-150759007(+)$1	292	131	145	23.5740
33ccc:::::::::	chr3:38455373-38455650(+)$1	277	101	115	19.5925
::::::::::::::	chr12:62990952-62991254(+)$1	302	137	151	21.9074
llldddd8888888	chr14:75598587-75598842(-)$1	255	91	105	20.3333
::::::::::::::	chr16:72819821-72820076(-)$1	255	102	116	29.5925
uuuuuuuuuuubb2	chr11:6635096-6635445(-)$1	349	47	61	19.4999
::::::::::::::	chr2:220047671-220047986(+)$1	315	16	30	22.8333
::::::::::::::	chr11:62566377-62566649(-)$1	272	7	21	26.6296
::::::::::::::	chr19:54377703-54377939(+)$1	236	178	192	23.9444
::::::::::::::	chr11:73685765-73686081(-)$1	316	103	117	23.2962
::::::::::::::	chr7:96639487-96639710(+)$1	223	73	87	20.8888
GGG}DDDDEEEEED	chr12:113826534-113826897(+)$1	363	148	162	18.6666
lldddd::::::::	chr6:52367591-52367890(-)$1	299	42	56	25.4259
xxxxxxxxxxxeee	chr1:110564277-110564525(+)$1	248	92	106	19.3148
^^^^^^^^^^^^^^	chr2:105964418-105964630(+)$1	212	107	121	23.3888
::::::::::::::	chr12:65089692-65089963(+)$1	271	129	143	23.9444
::::::::::::::	chr9:33111913-33112223(-)$1	310	124	138	22.8333
ccc[ccc!!ccc!!	chr2:240898928-240899282(-)$1	354	104	118	19.9629
::::::::::::::	chr2:149449579-149449975(+)$1	396	67	81	18.5740
::::::::::::::	chr19:50432034-50432281(-)$1	247	195	209	22.3703
::::::::::::::	chr6:28123584-28123866(+)$1	282	119	133	19.4074
:::::::::bb[dd	chr10:33467781-33468072(-)$1	291	115	129	21.5370
::::::::::::::	chr1:52981245-52981547(-)$1	302	114	128	18.0185
>>>>>>>>>>>>>>	chr17:61670176-61670447(+)$1	271	96	110	20.4259
FFF:::::::::::	chr8:566463-566739(-)$1	276	89	103	18.9444
::::::::::::::	chr11:71808929-71809224(-)$1	295	37	51	18.7592
::::::::::::::	chr12:65089803-65090045(+)$1	242	18	32	23.9444
ooooooccc]ccc]	chr4:114374722-114375030(-)$1	308	61	75	18.6666
^^^^^^^^^^^^^^	chr7:4306806-4307105(+)$1	299	103	117	23.7592
dddd!!bboooooo	chr14:23446701-23446958(-)$1	257	134	148	18.9444
^^^^^^^^^^^^^^	chr2:204308608-204308884(-)$1	276	94	108	19.2222
^^^^ccc:::::::	chrX:79927758-79928020(-)$1	262	56	70	26.3518
::::::::::::::	chr1:214161494-214161749(+)$1	255	29	43	20.0555
!ddddbb!!eeeee	chr20:33298586-33298833(+)$1	247	97	111	19.2222
^^^^^^^^^^^^^^	chr1:214161426-214161694(+)$1	268	97	111	20.0555
KKCCC:::::::DD	chr16:2819099-2819363(+)$1	264	66	80	19.5925
::::::::::::::	chr6:52367690-52367943(-)$1	253	95	109	25.4259
:::::::::::::e	chr1:169101517-169101740(+)$1	223	88	102	19.4074
::::::::::::::	chr2:105964365-105964607(+)$1	242	160	174	23.3888
::::::::::::::	chr11:62566481-62566786(-)$1	305	144	158	26.6296
:::::eeeeepppp	chr11:57558757-57559006(+)$1	249	77	91	18.4814
^^^^^^^^^^^^^^	chr6:32153790-32154015(-)$1	225	93	107	18.7592
:::::::ccc!!ee	chr16:58054434-58054836(+)$1	402	125	139	20.6111
ffbbvvvvvvvvvv	chr1:109816461-109816799(+)$1	338	84	98	18.3888
f++++++++++++c	chr6:36199418-36199670(+)$1	252	109	123	19.4999
::::::::::::DD	chr16:2819014-2819299(+)$1	285	151	165	19.5925
:::::::::::BBE	chr14:77254282-77254582(-)$1	300	49	63	20.8888
JJJJJ:::::::::	chr17:57778102-57778399(-)$1	297	118	132	19.5925
EEaooooooa::::	chrX:48925905-48926172(+)$1	267	111	125	20.1481
^^^^^^^^^^^^^^	chr14:24038494-24038826(-)$1	332	48	62	18.7592
::::::::::::::	chr17:78372369-78372677(-)$1	308	78	92	19.0370

#DB
..............	chr19:18280137-18280472(+)$1	1	113	127	26.8148
)))...........	chr14:24658521-24658824(-)$1	1	229	243	18.0185
..............	chr12:49330395-49330684(-)$1	1	39	53	19.2222
..............	chr7:150758715-150759007(+)$1	1	131	145	23.5740
..))).........	chr3:38455373-38455650(+)$1	1	101	115	19.5925
..............	chr12:62990952-62991254(+)$1	1	137	151	21.9074
...)))).......	chr14:75598587-75598842(-)$1	1	91	105	20.3333
..............	chr16:72819821-72820076(-)$1	1	102	116	29.5925
...........)).	chr11:6635096-6635445(-)$1	1	47	61	19.4999
..............	chr2:220047671-220047986(+)$1	1	16	30	22.8333
..............	chr11:62566377-62566649(-)$1	1	7	21	26.6296
..............	chr19:54377703-54377939(+)$1	1	178	192	23.9444
..............	chr11:73685765-73686081(-)$1	1	103	117	23.2962
..............	chr7:96639487-96639710(+)$1	1	73	87	20.8888
))).)))))))))(	chr12:113826534-113826897(+)$1	1	148	162	18.6666
..))))........	chr6:52367591-52367890(-)$1	1	42	56	25.4259
...........)))	chr1:110564277-110564525(+)$1	1	92	106	19.3148
..............	chr2:105964418-105964630(+)$1	1	107	121	23.3888
..............	chr12:65089692-65089963(+)$1	1	129	143	23.9444
..............	chr9:33111913-33112223(-)$1	1	124	138	22.8333
(((.(((..(((..	chr2:240898928-240899282(-)$1	1	104	118	19.9629
..............	chr2:149449579-149449975(+)$1	1	67	81	18.5740
..............	chr19:50432034-50432281(-)$1	1	195	209	22.3703
..............	chr6:28123584-28123866(+)$1	1	119	133	19.4074
.........((.((	chr10:33467781-33468072(-)$1	1	115	129	21.5370
..............	chr1:52981245-52981547(-)$1	1	114	128	18.0185
..............	chr17:61670176-61670447(+)$1	1	96	110	20.4259
(((...........	chr8:566463-566739(-)$1	1	89	103	18.9444
..............	chr11:71808929-71809224(-)$1	1	37	51	18.7592
..............	chr12:65089803-65090045(+)$1	1	18	32	23.9444
......))).))).	chr4:114374722-114375030(-)$1	1	61	75	18.6666
..............	chr7:4306806-4307105(+)$1	1	103	117	23.7592
((((..((......	chr14:23446701-23446958(-)$1	1	134	148	18.9444
..............	chr2:204308608-204308884(-)$1	1	94	108	19.2222
....))).......	chrX:79927758-79928020(-)$1	1	56	70	26.3518
..............	chr1:214161494-214161749(+)$1	1	29	43	20.0555
.((((((..(((((	chr20:33298586-33298833(+)$1	1	97	111	19.2222
..............	chr1:214161426-214161694(+)$1	1	97	111	20.0555
..(((.......((	chr16:2819099-2819363(+)$1	1	66	80	19.5925
..............	chr6:52367690-52367943(-)$1	1	95	109	25.4259
.............(	chr1:169101517-169101740(+)$1	1	88	102	19.4074
..............	chr2:105964365-105964607(+)$1	1	160	174	23.3888
..............	chr11:62566481-62566786(-)$1	1	144	158	26.6296
.....(((((....	chr11:57558757-57559006(+)$1	1	77	91	18.4814
..............	chr6:32153790-32154015(-)$1	1	93	107	18.7592
.......(((..((	chr16:58054434-58054836(+)$1	1	125	139	20.6111
((((..........	chr1:109816461-109816799(+)$1	1	84	98	18.3888
(............(	chr6:36199418-36199670(+)$1	1	109	123	19.4999
............((	chr16:2819014-2819299(+)$1	1	151	165	19.5925
...........(((	chr14:77254282-77254582(-)$1	1	49	63	20.8888
(((((.........	chr17:57778102-57778399(-)$1	1	118	132	19.5925
(((......)....	chrX:48925905-48926172(+)$1	1	111	125	20.1481
..............	chr14:24038494-24038826(-)$1	1	48	62	18.7592
..............	chr17:78372369-78372677(-)$1	1	78	92	19.0370

#PSSM
U : 0.38	u : 0.35	c : 0.11	C : 0.05	G : 0.03	A : 0.01	g : 0.01	a : 0.01	
u : 0.42	U : 0.38	C : 0.07	c : 0.05	A : 0.03	g : 0.01	
C : 0.38	c : 0.35	u : 0.11	U : 0.05	g : 0.03	G : 0.03	A : 0.01	
u : 0.48	U : 0.40	G : 0.05	c : 0.01	C : 0.01	A : 0.01	
c : 0.46	C : 0.38	U : 0.05	G : 0.03	u : 0.03	A : 0.01	
U : 0.42	u : 0.38	c : 0.11	C : 0.05	A : 0.01	
u : 0.46	U : 0.46	C : 0.01	a : 0.01	c : 0.01	A : 0.01	
u : 0.40	U : 0.40	C : 0.07	c : 0.07	a : 0.01	A : 0.01	
C : 0.42	c : 0.38	u : 0.09	U : 0.07	a : 0.01	
c : 0.44	C : 0.42	U : 0.05	u : 0.05	A : 0.01	
u : 0.48	U : 0.44	C : 0.05	c : 0.01	
u : 0.38	U : 0.37	C : 0.09	A : 0.07	c : 0.07	
C : 0.40	c : 0.38	U : 0.12	u : 0.07	
U : 0.44	u : 0.31	C : 0.12	c : 0.07	a : 0.01	G : 0.01	

#score	1146.1481481481471
#seq	54
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_CDS_m2_run2.nuc.txt

#NT
GCAAGAGAA	chr5:37392001-37392214(+)$1	213	102	111	12.2586
UGAAGCGAA	chr22:22892362-22892679(-)$1	317	174	183	13.7241
ugaagaaaa	chr6:44218108-44218313(+)$1	205	2	11	15.7931
ugaagagga	chr17:4575343-4575574(-)$1	231	36	45	13.8103
AGAAAAGAA	chr12:80189317-80189528(-)$1	211	70	79	12.6034
AGAAGAGAA	chr1:52902458-52902733(-)$1	275	119	128	15.2758
UGAAGCAAA	chr5:71491368-71491619(+)$1	251	54	63	11.4827
UGAAAAGAA	chrX:53426410-53426616(-)$1	206	12	21	15.3620
UCCAGAGAA	chr10:124896612-124896885(+)$1	273	214	223	10.7068
UGAGGAGAG	chr19:6381269-6381488(-)$1	219	24	33	10.1034
UGAAGAAAC	chr7:117831859-117832222(+)$1	363	127	136	11.6551
UGAAGAGAA	chr5:71491845-71492111(+)$1	266	162	171	18.0344
UGAAGAAAG	chr11:73584184-73584529(-)$1	345	149	158	11.8275
CGCAGAGAA	chr5:179146656-179146882(+)$1	226	105	114	11.1379
UGAACAGAA	chr10:120094967-120095241(-)$1	274	117	126	14.5000
ugaagaaga	chr1:150195457-150195667(-)$1	210	103	112	11.5689
UGAGAAGAA	chr14:78174352-78174654(+)$1	302	169	178	11.3965
AGAAGAGAU	chr7:98995395-98995702(-)$1	307	66	75	11.1379
UGAUGAUAA	chr14:21679464-21679667(-)$1	203	72	81	11.2241
UGACGAGGA	chr5:154181587-154181826(+)$1	239	89	98	9.7586
UCAAAAGAA	chr12:104333210-104333421(+)$1	211	139	148	12.0000
CGACGAGAA	chrX:152953915-152954130(+)$1	215	158	167	11.0517
GGAUGAGAA	chr12:111162364-111162654(-)$1	290	161	170	11.7413
GGAAAAGAA	chr17:28506114-28506413(+)$1	299	58	67	12.9482
GGAAAAGAA	chr1:186315168-186315437(-)$1	269	86	95	12.9482
gaaaaagaa	chr2:99980713-99980946(+)$1	233	62	71	9.5862
UUAAAAGAA	chr18:43668049-43668311(-)$1	262	240	249	11.9137
UGAAGAAAU	chr6:28359213-28359520(-)$1	307	53	62	11.6551
UGAAAAGAA	chr20:30380502-30380732(+)$1	230	43	52	15.3620
UGCAGAGAA	chr2:232322312-232322548(-)$1	236	70	79	14.0689
UAAAAAGAA	chr17:39845928-39846183(+)$1	255	234	243	12.0000
UAAAGAUAA	chr20:39713095-39713308(+)$1	213	32	41	11.7413
UGAAGAAAA	chr12:76449750-76449962(-)$1	212	65	74	15.7931
ACAAGAGAA	chr1:171535712-171535949(+)$1	237	131	140	11.9137
GGAAAAGAA	chr11:65826884-65827104(+)$1	220	100	109	12.9482
GGAACAGAA	chr21:45107412-45107702(+)$1	290	111	120	12.0862
GGAAGAAAA	chr14:24680561-24680859(-)$1	298	82	91	13.3793
UGAAAAUAA	chr2:55470529-55470842(-)$1	313	105	114	12.4310
UAAAGAUAA	chr10:70545840-70546076(+)$1	236	125	134	11.7413
AGAAGACAA	chr10:103577568-103577884(-)$1	316	218	227	12.0000
UGUAGAUAA	chr21:33976479-33976695(-)$1	216	73	82	11.2241
UGAAGCAAA	chr1:23637592-23637798(-)$1	206	190	199	11.4827
uuAAGAAAA	chr17:43226482-43226753(+)$1	271	2	11	12.3448
GGAAGAGUA	chr14:73574459-73574708(+)$1	249	14	23	11.1379
CGGAGAGAA	chr2:70315010-70315301(+)$1	291	28	37	11.0517
UGAGGAAAA	chr12:76442910-76443127(-)$1	217	117	126	11.8275
UGUAUAGAA	chr2:232324885-232325104(-)$1	219	25	34	10.5344
UGAAGAAAG	chr10:133784047-133784310(-)$1	263	81	90	11.8275
AGAUGAGAA	chr19:49658242-49658468(-)$1	226	177	186	11.3965
UGAAGAGAA	chrX:53436321-53436534(-)$1	213	129	138	18.0344
UUAAGUGAA	chr2:153528872-153529130(-)$1	258	6	15	10.1034
UGUUGAGAA	chr11:94586996-94587325(+)$1	329	121	130	10.2758
CUAAGAGAA	chrX:100650325-100650545(+)$1	220	55	64	11.6551
UCAAGAGAG	chr3:46963673-46963903(-)$1	230	106	115	10.7068
Ugaagaaga	chr1:52305805-52306141(-)$1	336	42	51	11.5689
UAUAGAGAA	chr9:100693199-100693427(-)$1	228	59	68	10.7931
GGAAGGGAA	chr12:53691727-53691972(+)$1	245	15	24	11.1379

#otherMatches

#Struct PSSM
========]	chr6:90361828-90362097(-)$1	269	134	143	9.8448
a]ffffff3	chr5:37392001-37392214(+)$1	213	102	111	12.2586
fffff::::	chr22:22892362-22892679(-)$1	317	174	183	13.7241
::::::::f	chr6:44218108-44218313(+)$1	205	2	11	15.7931
^^^^^^^^^	chr17:4575343-4575574(-)$1	231	36	45	13.8103
cssssssss	chr12:80189317-80189528(-)$1	211	70	79	12.6034
=:eeeee%%	chr1:52902458-52902733(-)$1	275	119	128	15.2758
DD{EEEEE:	chr5:71491368-71491619(+)$1	251	54	63	11.4827
dmmmmdddd	chrX:53426410-53426616(-)$1	206	12	21	15.3620
CCC}CCC}B	chr10:124896612-124896885(+)$1	273	214	223	10.7068
EEEEE{CCC	chr19:6381269-6381488(-)$1	219	24	33	10.1034
uuuuuuuuu	chr7:117831859-117832222(+)$1	363	127	136	11.6551
::::BBZZZ	chr5:71491845-71492111(+)$1	266	162	171	18.0344
ff22bb22c	chr11:73584184-73584529(-)$1	345	149	158	11.8275
$$cccoooo	chr5:179146656-179146882(+)$1	226	105	114	11.1379
b333=====	chr10:120094967-120095241(-)$1	274	117	126	14.5000
ffffff:::	chr1:150195457-150195667(-)$1	210	103	112	11.5689
::::iiiii	chr14:78174352-78174654(+)$1	302	169	178	11.3965
99999ffff	chr7:98995395-98995702(-)$1	307	66	75	11.1379
a[bbmmmmb	chr14:21679464-21679667(-)$1	203	72	81	11.2241
FFFFFF{CC	chr5:154181587-154181826(+)$1	239	89	98	9.7586
d::::::::	chr12:104333210-104333421(+)$1	211	139	148	12.0000
DD\\\\\\\	chrX:152953915-152954130(+)$1	215	158	167	11.0517
ff"""dddd	chr12:111162364-111162654(-)$1	290	161	170	11.7413
WWWWWWWWW	chr17:28506114-28506413(+)$1	299	58	67	12.9482
JJJJJJJJJ	chr1:186315168-186315437(-)$1	269	86	95	12.9482
^^^^^^^^^	chr2:99980713-99980946(+)$1	233	62	71	9.5862
fffffnnnn	chr18:43668049-43668311(-)$1	262	240	249	11.9137
cqqqqqqqq	chr6:28359213-28359520(-)$1	307	53	62	11.6551
ggggg:fff	chr20:30380502-30380732(+)$1	230	43	52	15.3620
::eeeeenn	chr2:232322312-232322548(-)$1	236	70	79	14.0689
xxxxxxxxx	chr17:39845928-39846183(+)$1	255	234	243	12.0000
:::::::::	chr20:39713095-39713308(+)$1	213	32	41	11.7413
^^^^^^^^^	chr12:76449750-76449962(-)$1	212	65	74	15.7931
C@@@@@@@@	chr1:171535712-171535949(+)$1	237	131	140	11.9137
dddd::::D	chr11:65826884-65827104(+)$1	220	100	109	12.9482
ffppppppp	chr21:45107412-45107702(+)$1	290	111	120	12.0862
cc::cccmm	chr14:24680561-24680859(-)$1	298	82	91	13.3793
e:::::::D	chr2:55470529-55470842(-)$1	313	105	114	12.4310
ffffff"""	chr10:70545840-70546076(+)$1	236	125	134	11.7413
$$$$a[a!!	chr10:103577568-103577884(-)$1	316	218	227	12.0000
hhhhhhh22	chr21:33976479-33976695(-)$1	216	73	82	11.2241
}AYYBB:::	chr1:23637592-23637798(-)$1	206	190	199	11.4827
:::::::::	chr17:43226482-43226753(+)$1	271	2	11	12.3448
CCC{DDDDL	chr14:73574459-73574708(+)$1	249	14	23	11.1379
dd:ddddqq	chr2:70315010-70315301(+)$1	291	28	37	11.0517
:::cccooo	chr12:76442910-76443127(-)$1	217	117	126	11.8275
=========	chr2:232324885-232325104(-)$1	219	25	34	10.5344
E::::::hh	chr10:133784047-133784310(-)$1	263	81	90	11.8275
fff))))))	chr19:49658242-49658468(-)$1	226	177	186	11.3965
::ccc[a""	chrX:53436321-53436534(-)$1	213	129	138	18.0344
CC{EEEEE:	chr2:153528872-153529130(-)$1	258	6	15	10.1034
ddddEEEEE	chr11:94586996-94587325(+)$1	329	121	130	10.2758
b####hhhh	chrX:100650325-100650545(+)$1	220	55	64	11.6551
ccmmmmccc	chr3:46963673-46963903(-)$1	230	106	115	10.7068
WWWWWWFFF	chr1:52305805-52306141(-)$1	336	42	51	11.5689
c>>>>>>>>	chr9:100693199-100693427(-)$1	228	59	68	10.7931
dd:DDDDMM	chr12:53691727-53691972(+)$1	245	15	24	11.1379

#DB
)))))))).	chr6:90361828-90362097(-)$1	1	134	143	9.8448
).)))))).	chr5:37392001-37392214(+)$1	1	102	111	12.2586
)))))....	chr22:22892362-22892679(-)$1	1	174	183	13.7241
........(	chr6:44218108-44218313(+)$1	1	2	11	15.7931
.........	chr17:4575343-4575574(-)$1	1	36	45	13.8103
(........	chr12:80189317-80189528(-)$1	1	70	79	12.6034
).(((((..	chr1:52902458-52902733(-)$1	1	119	128	15.2758
((.(((((.	chr5:71491368-71491619(+)$1	1	54	63	11.4827
(....))))	chrX:53426410-53426616(-)$1	1	12	21	15.3620
))).))).)	chr10:124896612-124896885(+)$1	1	214	223	10.7068
(((((.(((	chr19:6381269-6381488(-)$1	1	24	33	10.1034
.........	chr7:117831859-117832222(+)$1	1	127	136	11.6551
....))...	chr5:71491845-71492111(+)$1	1	162	171	18.0344
))..))..)	chr11:73584184-73584529(-)$1	1	149	158	11.8275
..(((....	chr5:179146656-179146882(+)$1	1	105	114	11.1379
)...)))))	chr10:120094967-120095241(-)$1	1	117	126	14.5000
))))))...	chr1:150195457-150195667(-)$1	1	103	112	11.5689
....(((((	chr14:78174352-78174654(+)$1	1	169	178	11.3965
.....))))	chr7:98995395-98995702(-)$1	1	66	75	11.1379
(.((....)	chr14:21679464-21679667(-)$1	1	72	81	11.2241
((((((.((	chr5:154181587-154181826(+)$1	1	89	98	9.7586
)........	chr12:104333210-104333421(+)$1	1	139	148	12.0000
)).......	chrX:152953915-152954130(+)$1	1	158	167	11.0517
((...((((	chr12:111162364-111162654(-)$1	1	161	170	11.7413
.........	chr17:28506114-28506413(+)$1	1	58	67	12.9482
(((((((((	chr1:186315168-186315437(-)$1	1	86	95	12.9482
.........	chr2:99980713-99980946(+)$1	1	62	71	9.5862
(((((....	chr18:43668049-43668311(-)$1	1	240	249	11.9137
(........	chr6:28359213-28359520(-)$1	1	53	62	11.6551
))))).(((	chr20:30380502-30380732(+)$1	1	43	52	15.3620
..(((((..	chr2:232322312-232322548(-)$1	1	70	79	14.0689
.........	chr17:39845928-39846183(+)$1	1	234	243	12.0000
.........	chr20:39713095-39713308(+)$1	1	32	41	11.7413
.........	chr12:76449750-76449962(-)$1	1	65	74	15.7931
)........	chr1:171535712-171535949(+)$1	1	131	140	11.9137
))))....)	chr11:65826884-65827104(+)$1	1	100	109	12.9482
((.......	chr21:45107412-45107702(+)$1	1	111	120	12.0862
))..(((..	chr14:24680561-24680859(-)$1	1	82	91	13.3793
).......)	chr2:55470529-55470842(-)$1	1	105	114	12.4310
((((((...	chr10:70545840-70546076(+)$1	1	125	134	11.7413
....(.(..	chr10:103577568-103577884(-)$1	1	218	227	12.0000
)))))))..	chr21:33976479-33976695(-)$1	1	73	82	11.2241
.)..))...	chr1:23637592-23637798(-)$1	1	190	199	11.4827
.........	chr17:43226482-43226753(+)$1	1	2	11	12.3448
(((.((((.	chr14:73574459-73574708(+)$1	1	14	23	11.1379
)).((((..	chr2:70315010-70315301(+)$1	1	28	37	11.0517
...(((...	chr12:76442910-76443127(-)$1	1	117	126	11.8275
(((((((((	chr2:232324885-232325104(-)$1	1	25	34	10.5344
(......((	chr10:133784047-133784310(-)$1	1	81	90	11.8275
(((......	chr19:49658242-49658468(-)$1	1	177	186	11.3965
..(((.(..	chrX:53436321-53436534(-)$1	1	129	138	18.0344
((.(((((.	chr2:153528872-153529130(-)$1	1	6	15	10.1034
)))))))))	chr11:94586996-94587325(+)$1	1	121	130	10.2758
(....((((	chrX:100650325-100650545(+)$1	1	55	64	11.6551
((....)))	chr3:46963673-46963903(-)$1	1	106	115	10.7068
......(((	chr1:52305805-52306141(-)$1	1	42	51	11.5689
)........	chr9:100693199-100693427(-)$1	1	59	68	10.7931
)).((((..	chr12:53691727-53691972(+)$1	1	15	24	11.1379

#PSSM
U : 0.58	G : 0.15	A : 0.10	u : 0.06	C : 0.06	g : 0.01	
G : 0.68	C : 0.08	g : 0.06	A : 0.06	U : 0.05	a : 0.01	u : 0.01	
A : 0.75	a : 0.08	U : 0.06	C : 0.05	G : 0.03	
A : 0.75	a : 0.08	U : 0.06	G : 0.05	C : 0.03	
G : 0.67	A : 0.18	g : 0.06	C : 0.03	a : 0.01	U : 0.01	
A : 0.82	a : 0.08	C : 0.05	U : 0.01	G : 0.01	
G : 0.63	A : 0.17	U : 0.08	a : 0.05	g : 0.03	C : 0.01	
A : 0.87	g : 0.05	a : 0.03	G : 0.01	U : 0.01	
A : 0.77	a : 0.08	G : 0.06	C : 0.03	U : 0.03	

#score	709.6206896551726
#seq	58
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_CDS_m2_run1.nuc.txt

#NT
UUU	chr13:79896440-79896694(-)$1	254	0	3	8.9999
UUU	chr5:95234329-95234583(-)$1	254	16	19	8.9999
UUU	chr12:112516427-112516644(-)$1	217	84	87	8.9999
UUU	chr1:231906491-231906818(+)$1	327	9	12	8.9999
UUU	chr16:66783030-66783312(-)$1	282	11	14	8.9999
UUU	chr11:10024097-10024334(-)$1	237	11	14	8.9999
UUU	chr12:80014754-80015011(-)$1	257	10	13	8.9999
UUU	chr20:12989789-12990092(+)$1	303	15	18	8.9999
UUU	chr6:131948435-131948664(-)$1	229	0	3	8.9999
UUU	chr2:86305136-86305405(-)$1	269	9	12	8.9999
UUU	chr2:99977600-99977888(+)$1	288	2	5	8.9999
UUU	chr14:20924099-20924360(+)$1	261	171	174	8.9999
UUU	chrX:138856761-138857012(-)$1	251	16	19	8.9999
UUU	chr10:27332328-27332566(-)$1	238	42	45	8.9999
UUU	chr1:93159755-93160010(-)$1	255	10	13	8.9999
uuu	chr18:29100667-29100949(+)$1	282	27	30	8.9999
UUU	chr3:52620340-52620553(-)$1	213	26	29	8.9999
UUU	chr6:119327577-119327822(-)$1	245	38	41	8.9999
UUU	chr11:108204558-108204795(+)$1	237	20	23	8.9999
UUU	chr18:29115174-29115424(+)$1	250	7	10	8.9999
UUU	chr4:83796844-83797075(-)$1	231	22	25	8.9999
UUU	chr16:53279239-53279479(+)$1	240	0	3	8.9999
UUU	chr17:38557015-38557233(-)$1	218	66	69	8.9999
UUU	chr19:44679565-44679931(+)$1	366	5	8	8.9999
UUU	chr5:110456626-110456861(+)$1	235	0	3	8.9999
UUU	chr4:40154383-40154613(+)$1	230	1	4	8.9999
UUU	chr2:180013913-180014210(-)$1	297	45	48	8.9999
UUU	chr14:45706801-45707024(-)$1	223	15	18	8.9999
UUU	chr17:61890539-61890766(+)$1	227	27	30	8.9999
UUU	chr6:56443611-56443831(-)$1	220	3	6	8.9999
UUU	chr11:118375186-118375441(+)$1	255	15	18	8.9999
UUU	chr2:21238027-21238232(-)$1	205	82	85	8.9999
UUU	chr16:74927476-74927736(-)$1	260	172	175	8.9999
UUU	chrX:18972396-18972617(-)$1	221	65	68	8.9999
uuu	chr16:57254545-57254856(+)$1	311	3	6	8.9999
UUU	chr6:129955086-129955306(-)$1	220	3	6	8.9999
UUU	chr2:11332701-11332937(-)$1	236	2	5	8.9999
UUU	chr2:122209265-122209498(-)$1	233	16	19	8.9999
UUU	chr12:69103684-69103912(+)$1	228	12	15	8.9999
UUU	chr21:30318130-30318371(-)$1	241	25	28	8.9999
UUU	chr13:35630046-35630274(+)$1	228	21	24	8.9999
UUU	chr12:9261878-9262091(-)$1	213	72	75	8.9999
UUU	chrX:70775057-70775309(+)$1	252	12	15	8.9999
UUU	chr3:160129677-160129941(+)$1	264	18	21	8.9999
UUU	chr17:49072365-49072610(-)$1	245	4	7	8.9999
UUU	chr2:160605223-160605504(+)$1	281	33	36	8.9999
UUU	chr14:96986430-96986665(+)$1	235	97	100	8.9999
UUU	chr7:134642883-134643142(+)$1	259	47	50	8.9999
UUU	chr17:40139756-40140032(-)$1	276	25	28	8.9999
UUU	chr6:143754866-143755121(-)$1	255	84	87	8.9999
UUU	chrX:70781623-70781846(+)$1	223	98	101	8.9999
UUU	chr5:647818-648093(+)$1	275	16	19	8.9999
UUU	chr10:129913679-129913992(-)$1	313	29	32	8.9999
UUU	chr9:6814586-6814808(+)$1	222	13	16	8.9999
UUU	chr11:108154869-108155150(+)$1	281	8	11	8.9999
UUU	chr5:86648874-86649108(+)$1	234	29	32	8.9999
UUU	chr16:2814100-2814360(+)$1	260	193	196	8.9999
UUU	chrX:128620913-128621132(-)$1	219	5	8	8.9999
UUU	chrX:70517169-70517395(+)$1	226	48	51	8.9999
UUU	chr1:109490112-109490380(-)$1	268	0	3	8.9999
UUU	chr8:17406159-17406424(+)$1	265	16	19	8.9999
UUU	chr18:8143650-8143879(+)$1	229	95	98	8.9999
UUU	chr1:109492357-109492633(-)$1	276	39	42	8.9999
UUU	chr2:165557036-165557301(-)$1	265	6	9	8.9999
UUU	chr1:46120094-46120411(-)$1	317	112	115	8.9999
UUU	chr20:30915258-30915533(+)$1	275	76	79	8.9999
UUU	chr2:86346015-86346271(+)$1	256	6	9	8.9999
UUU	chrX:119691687-119691898(-)$1	211	101	104	8.9999
UUU	chr4:95171853-95172085(+)$1	232	9	12	8.9999
UUU	chr5:64520650-64520882(-)$1	232	1	4	8.9999
UUU	chr3:121411276-121411524(-)$1	248	30	33	8.9999
UUU	chr6:144794755-144794965(+)$1	210	3	6	8.9999
UUU	chr2:160295420-160295728(-)$1	308	215	218	8.9999
UUU	chr5:14387453-14387727(+)$1	274	32	35	8.9999
UUU	chr10:127418793-127419069(+)$1	276	56	59	8.9999
UUU	chr1:174210519-174210831(+)$1	312	4	7	8.9999
UUU	chr16:58572002-58572231(-)$1	229	10	13	8.9999
UUU	chr11:65826315-65826566(+)$1	251	151	154	8.9999
UUU	chr1:53504510-53504783(+)$1	273	2	5	8.9999
UUU	chr2:85769957-85770219(+)$1	262	26	29	8.9999
UUU	chr12:90004869-90005159(-)$1	290	113	116	8.9999
UUU	chr1:154143024-154143250(-)$1	226	26	29	8.9999
UUU	chr3:50004810-50005084(+)$1	274	44	47	8.9999
UUU	chr20:34302115-34302335(-)$1	220	24	27	8.9999
UUU	chr10:128822848-128823139(+)$1	291	81	84	8.9999
UUU	chr3:47162496-47162811(-)$1	315	18	21	8.9999
UUU	chr14:56079171-56079390(+)$1	219	131	134	8.9999
UUU	chrX:106358573-106358834(-)$1	261	42	45	8.9999
UUU	chr2:20135147-20135375(-)$1	228	2	5	8.9999
UUU	chr2:101675782-101675989(-)$1	207	59	62	8.9999
UUU	chr9:74337319-74337531(-)$1	212	25	28	8.9999
UUU	chr4:48862658-48862984(+)$1	326	0	3	8.9999
uuu	chr17:29490102-29490325(+)$1	223	7	10	8.9999
UUU	chr4:95376371-95376639(+)$1	268	13	16	8.9999
UUU	chr3:160245640-160245867(-)$1	227	24	27	8.9999
UUU	chrX:24091257-24091516(+)$1	259	36	39	8.9999

#otherMatches

#Struct PSSM
ttt	chr2:109100504-109100715(+)$1	211	15	18	8.9999
:::	chr13:79896440-79896694(-)$1	254	0	3	8.9999
mmm	chr5:95234329-95234583(-)$1	254	16	19	8.9999
2ii	chr12:112516427-112516644(-)$1	217	84	87	8.9999
COO	chr1:231906491-231906818(+)$1	327	9	12	8.9999
JJJ	chr16:66783030-66783312(-)$1	282	11	14	8.9999
:::	chr11:10024097-10024334(-)$1	237	11	14	8.9999
ddd	chr12:80014754-80015011(-)$1	257	10	13	8.9999
E::	chr20:12989789-12990092(+)$1	303	15	18	8.9999
:::	chr6:131948435-131948664(-)$1	229	0	3	8.9999
EEE	chr2:86305136-86305405(-)$1	269	9	12	8.9999
HHH	chr2:99977600-99977888(+)$1	288	2	5	8.9999
:::	chr14:20924099-20924360(+)$1	261	171	174	8.9999
GGG	chrX:138856761-138857012(-)$1	251	16	19	8.9999
d33	chr10:27332328-27332566(-)$1	238	42	45	8.9999
EEE	chr1:93159755-93160010(-)$1	255	10	13	8.9999
fff	chr18:29100667-29100949(+)$1	282	27	30	8.9999
ggg	chr3:52620340-52620553(-)$1	213	26	29	8.9999
ppe	chr6:119327577-119327822(-)$1	245	38	41	8.9999
eee	chr11:108204558-108204795(+)$1	237	20	23	8.9999
GGG	chr18:29115174-29115424(+)$1	250	7	10	8.9999
G::	chr4:83796844-83797075(-)$1	231	22	25	8.9999
:::	chr16:53279239-53279479(+)$1	240	0	3	8.9999
:::	chr17:38557015-38557233(-)$1	218	66	69	8.9999
fff	chr19:44679565-44679931(+)$1	366	5	8	8.9999
:::	chr5:110456626-110456861(+)$1	235	0	3	8.9999
:ff	chr4:40154383-40154613(+)$1	230	1	4	8.9999
g!!	chr2:180013913-180014210(-)$1	297	45	48	8.9999
E::	chr14:45706801-45707024(-)$1	223	15	18	8.9999
cll	chr17:61890539-61890766(+)$1	227	27	30	8.9999
:::	chr6:56443611-56443831(-)$1	220	3	6	8.9999
===	chr11:118375186-118375441(+)$1	255	15	18	8.9999
ddd	chr2:21238027-21238232(-)$1	205	82	85	8.9999
EEE	chr16:74927476-74927736(-)$1	260	172	175	8.9999
hhh	chrX:18972396-18972617(-)$1	221	65	68	8.9999
:::	chr16:57254545-57254856(+)$1	311	3	6	8.9999
:::	chr6:129955086-129955306(-)$1	220	3	6	8.9999
:::	chr2:11332701-11332937(-)$1	236	2	5	8.9999
III	chr2:122209265-122209498(-)$1	233	16	19	8.9999
CC{	chr12:69103684-69103912(+)$1	228	12	15	8.9999
vvv	chr21:30318130-30318371(-)$1	241	25	28	8.9999
cc"	chr13:35630046-35630274(+)$1	228	21	24	8.9999
^^^	chr12:9261878-9262091(-)$1	213	72	75	8.9999
GGG	chrX:70775057-70775309(+)$1	252	12	15	8.9999
ggg	chr3:160129677-160129941(+)$1	264	18	21	8.9999
:::	chr17:49072365-49072610(-)$1	245	4	7	8.9999
333	chr2:160605223-160605504(+)$1	281	33	36	8.9999
FMM	chr14:96986430-96986665(+)$1	235	97	100	8.9999
h44	chr7:134642883-134643142(+)$1	259	47	50	8.9999
GGG	chr17:40139756-40140032(-)$1	276	25	28	8.9999
eee	chr6:143754866-143755121(-)$1	255	84	87	8.9999
555	chrX:70781623-70781846(+)$1	223	98	101	8.9999
fff	chr5:647818-648093(+)$1	275	16	19	8.9999
FFF	chr10:129913679-129913992(-)$1	313	29	32	8.9999
KKE	chr9:6814586-6814808(+)$1	222	13	16	8.9999
HHH	chr11:108154869-108155150(+)$1	281	8	11	8.9999
DDD	chr5:86648874-86649108(+)$1	234	29	32	8.9999
:::	chr16:2814100-2814360(+)$1	260	193	196	8.9999
ddd	chrX:128620913-128621132(-)$1	219	5	8	8.9999
iii	chrX:70517169-70517395(+)$1	226	48	51	8.9999
ccc	chr1:109490112-109490380(-)$1	268	0	3	8.9999
:::	chr8:17406159-17406424(+)$1	265	16	19	8.9999
HHH	chr18:8143650-8143879(+)$1	229	95	98	8.9999
eff	chr1:109492357-109492633(-)$1	276	39	42	8.9999
:JJ	chr2:165557036-165557301(-)$1	265	6	9	8.9999
fff	chr1:46120094-46120411(-)$1	317	112	115	8.9999
fff	chr20:30915258-30915533(+)$1	275	76	79	8.9999
fff	chr2:86346015-86346271(+)$1	256	6	9	8.9999
::d	chrX:119691687-119691898(-)$1	211	101	104	8.9999
FEE	chr4:95171853-95172085(+)$1	232	9	12	8.9999
:bb	chr5:64520650-64520882(-)$1	232	1	4	8.9999
:::	chr3:121411276-121411524(-)$1	248	30	33	8.9999
ddm	chr6:144794755-144794965(+)$1	210	3	6	8.9999
hhh	chr2:160295420-160295728(-)$1	308	215	218	8.9999
GGL	chr5:14387453-14387727(+)$1	274	32	35	8.9999
KHH	chr10:127418793-127419069(+)$1	276	56	59	8.9999
::G	chr1:174210519-174210831(+)$1	312	4	7	8.9999
ttt	chr16:58572002-58572231(-)$1	229	10	13	8.9999
$$c	chr11:65826315-65826566(+)$1	251	151	154	8.9999
:::	chr1:53504510-53504783(+)$1	273	2	5	8.9999
JJJ	chr2:85769957-85770219(+)$1	262	26	29	8.9999
:ee	chr12:90004869-90005159(-)$1	290	113	116	8.9999
fff	chr1:154143024-154143250(-)$1	226	26	29	8.9999
SSS	chr3:50004810-50005084(+)$1	274	44	47	8.9999
EEe	chr20:34302115-34302335(-)$1	220	24	27	8.9999
FFF	chr10:128822848-128823139(+)$1	291	81	84	8.9999
JJJ	chr3:47162496-47162811(-)$1	315	18	21	8.9999
ncc	chr14:56079171-56079390(+)$1	219	131	134	8.9999
mmm	chrX:106358573-106358834(-)$1	261	42	45	8.9999
:::	chr2:20135147-20135375(-)$1	228	2	5	8.9999
ggg	chr2:101675782-101675989(-)$1	207	59	62	8.9999
:::	chr9:74337319-74337531(-)$1	212	25	28	8.9999
:::	chr4:48862658-48862984(+)$1	326	0	3	8.9999
:::	chr17:29490102-29490325(+)$1	223	7	10	8.9999
dd2	chr4:95376371-95376639(+)$1	268	13	16	8.9999
LLG	chr3:160245640-160245867(-)$1	227	24	27	8.9999
eee	chrX:24091257-24091516(+)$1	259	36	39	8.9999

#DB
...	chr2:109100504-109100715(+)$1	1	15	18	8.9999
...	chr13:79896440-79896694(-)$1	1	0	3	8.9999
...	chr5:95234329-95234583(-)$1	1	16	19	8.9999
.))	chr12:112516427-112516644(-)$1	1	84	87	8.9999
(..	chr1:231906491-231906818(+)$1	1	9	12	8.9999
(((	chr16:66783030-66783312(-)$1	1	11	14	8.9999
...	chr11:10024097-10024334(-)$1	1	11	14	8.9999
(((	chr12:80014754-80015011(-)$1	1	10	13	8.9999
(..	chr20:12989789-12990092(+)$1	1	15	18	8.9999
...	chr6:131948435-131948664(-)$1	1	0	3	8.9999
(((	chr2:86305136-86305405(-)$1	1	9	12	8.9999
(((	chr2:99977600-99977888(+)$1	1	2	5	8.9999
...	chr14:20924099-20924360(+)$1	1	171	174	8.9999
(((	chrX:138856761-138857012(-)$1	1	16	19	8.9999
)..	chr10:27332328-27332566(-)$1	1	42	45	8.9999
(((	chr1:93159755-93160010(-)$1	1	10	13	8.9999
(((	chr18:29100667-29100949(+)$1	1	27	30	8.9999
(((	chr3:52620340-52620553(-)$1	1	26	29	8.9999
..)	chr6:119327577-119327822(-)$1	1	38	41	8.9999
(((	chr11:108204558-108204795(+)$1	1	20	23	8.9999
(((	chr18:29115174-29115424(+)$1	1	7	10	8.9999
(..	chr4:83796844-83797075(-)$1	1	22	25	8.9999
...	chr16:53279239-53279479(+)$1	1	0	3	8.9999
...	chr17:38557015-38557233(-)$1	1	66	69	8.9999
(((	chr19:44679565-44679931(+)$1	1	5	8	8.9999
...	chr5:110456626-110456861(+)$1	1	0	3	8.9999
.((	chr4:40154383-40154613(+)$1	1	1	4	8.9999
(..	chr2:180013913-180014210(-)$1	1	45	48	8.9999
(..	chr14:45706801-45707024(-)$1	1	15	18	8.9999
(..	chr17:61890539-61890766(+)$1	1	27	30	8.9999
...	chr6:56443611-56443831(-)$1	1	3	6	8.9999
(((	chr11:118375186-118375441(+)$1	1	15	18	8.9999
(((	chr2:21238027-21238232(-)$1	1	82	85	8.9999
)))	chr16:74927476-74927736(-)$1	1	172	175	8.9999
)))	chrX:18972396-18972617(-)$1	1	65	68	8.9999
...	chr16:57254545-57254856(+)$1	1	3	6	8.9999
...	chr6:129955086-129955306(-)$1	1	3	6	8.9999
...	chr2:11332701-11332937(-)$1	1	2	5	8.9999
(((	chr2:122209265-122209498(-)$1	1	16	19	8.9999
((.	chr12:69103684-69103912(+)$1	1	12	15	8.9999
...	chr21:30318130-30318371(-)$1	1	25	28	8.9999
((.	chr13:35630046-35630274(+)$1	1	21	24	8.9999
...	chr12:9261878-9262091(-)$1	1	72	75	8.9999
(((	chrX:70775057-70775309(+)$1	1	12	15	8.9999
(((	chr3:160129677-160129941(+)$1	1	18	21	8.9999
...	chr17:49072365-49072610(-)$1	1	4	7	8.9999
...	chr2:160605223-160605504(+)$1	1	33	36	8.9999
(..	chr14:96986430-96986665(+)$1	1	97	100	8.9999
)..	chr7:134642883-134643142(+)$1	1	47	50	8.9999
(((	chr17:40139756-40140032(-)$1	1	25	28	8.9999
)))	chr6:143754866-143755121(-)$1	1	84	87	8.9999
...	chrX:70781623-70781846(+)$1	1	98	101	8.9999
(((	chr5:647818-648093(+)$1	1	16	19	8.9999
(((	chr10:129913679-129913992(-)$1	1	29	32	8.9999
..(	chr9:6814586-6814808(+)$1	1	13	16	8.9999
(((	chr11:108154869-108155150(+)$1	1	8	11	8.9999
(((	chr5:86648874-86649108(+)$1	1	29	32	8.9999
...	chr16:2814100-2814360(+)$1	1	193	196	8.9999
(((	chrX:128620913-128621132(-)$1	1	5	8	8.9999
)))	chrX:70517169-70517395(+)$1	1	48	51	8.9999
(((	chr1:109490112-109490380(-)$1	1	0	3	8.9999
...	chr8:17406159-17406424(+)$1	1	16	19	8.9999
)))	chr18:8143650-8143879(+)$1	1	95	98	8.9999
(((	chr1:109492357-109492633(-)$1	1	39	42	8.9999
.((	chr2:165557036-165557301(-)$1	1	6	9	8.9999
(((	chr1:46120094-46120411(-)$1	1	112	115	8.9999
(((	chr20:30915258-30915533(+)$1	1	76	79	8.9999
(((	chr2:86346015-86346271(+)$1	1	6	9	8.9999
..(	chrX:119691687-119691898(-)$1	1	101	104	8.9999
(((	chr4:95171853-95172085(+)$1	1	9	12	8.9999
.((	chr5:64520650-64520882(-)$1	1	1	4	8.9999
...	chr3:121411276-121411524(-)$1	1	30	33	8.9999
((.	chr6:144794755-144794965(+)$1	1	3	6	8.9999
(((	chr2:160295420-160295728(-)$1	1	215	218	8.9999
((.	chr5:14387453-14387727(+)$1	1	32	35	8.9999
.((	chr10:127418793-127419069(+)$1	1	56	59	8.9999
..(	chr1:174210519-174210831(+)$1	1	4	7	8.9999
...	chr16:58572002-58572231(-)$1	1	10	13	8.9999
..(	chr11:65826315-65826566(+)$1	1	151	154	8.9999
...	chr1:53504510-53504783(+)$1	1	2	5	8.9999
(((	chr2:85769957-85770219(+)$1	1	26	29	8.9999
.((	chr12:90004869-90005159(-)$1	1	113	116	8.9999
(((	chr1:154143024-154143250(-)$1	1	26	29	8.9999
...	chr3:50004810-50005084(+)$1	1	44	47	8.9999
(((	chr20:34302115-34302335(-)$1	1	24	27	8.9999
(((	chr10:128822848-128823139(+)$1	1	81	84	8.9999
(((	chr3:47162496-47162811(-)$1	1	18	21	8.9999
.))	chr14:56079171-56079390(+)$1	1	131	134	8.9999
...	chrX:106358573-106358834(-)$1	1	42	45	8.9999
...	chr2:20135147-20135375(-)$1	1	2	5	8.9999
(((	chr2:101675782-101675989(-)$1	1	59	62	8.9999
...	chr9:74337319-74337531(-)$1	1	25	28	8.9999
...	chr4:48862658-48862984(+)$1	1	0	3	8.9999
...	chr17:29490102-29490325(+)$1	1	7	10	8.9999
)).	chr4:95376371-95376639(+)$1	1	13	16	8.9999
..(	chr3:160245640-160245867(-)$1	1	24	27	8.9999
(((	chrX:24091257-24091516(+)$1	1	36	39	8.9999

#PSSM
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_UTR_m1_run1.nuc.txt

#NT
GAAGAGG	chr5:179044889-179045145(-)$1	256	150	157	13.2131
GGAGAAG	chr12:1025793-1026058(-)$1	265	12	19	13.8688
GAAGGAG	chr5:60240919-60241209(+)$1	290	219	226	13.6229
GAAGAAA	chr1:90482803-90483090(+)$1	287	112	119	13.9508
GACGAAG	chr7:102180367-102180624(-)$1	257	108	115	13.5409
GGAGAAG	chrX:53439024-53439303(-)$1	279	100	107	13.8688
GAGGAAG	chr17:4790314-4790574(+)$1	260	122	129	14.0327
GAAGGAG	chr17:62498455-62498663(-)$1	208	29	36	13.6229
GGAGAAG	chr15:64422382-64422621(+)$1	239	52	59	13.8688
GAGGAAG	chr3:9984397-9984634(+)$1	237	223	230	14.0327
GAGGAAG	chr18:9570045-9570376(-)$1	331	104	111	14.0327
GAAGAAA	chr17:48818917-48819121(+)$1	204	124	131	13.9508
GAAGAAG	chr14:23946605-23946877(+)$1	272	129	136	17.6393
GAAGAAC	chr7:106799829-106800154(+)$1	325	138	145	13.8688
GAAGGAG	chr19:12788003-12788244(-)$1	241	169	176	13.6229
ggagaag	chr19:4499595-4499813(+)$1	218	14	21	13.8688
GAAGAAC	chr12:72311379-72311615(+)$1	236	110	117	13.8688
GAGGAAG	chr6:126332384-126332641(+)$1	257	141	148	14.0327
GAAGAUG	chr8:124141304-124141558(+)$1	254	47	54	13.2950
GCAGAAG	chr20:34319792-34320088(-)$1	296	48	55	13.5409
GUAGAAG	chr1:52947018-52947352(-)$1	334	96	103	13.4590
GAAGAAA	chr13:26793582-26793871(-)$1	289	121	128	13.9508
GAAGAAA	chr20:42162547-42162833(+)$1	286	141	148	13.9508
GAGGAAG	chr1:153735608-153735929(+)$1	321	15	22	14.0327
GAAGAAA	chr1:100609519-100609818(+)$1	299	125	132	13.9508
GAAGAAG	chr12:76442103-76442311(-)$1	208	30	37	17.6393
GAAGAAG	chr1:61553810-61554080(+)$1	270	133	140	17.6393
GAAGGAG	chr8:28904808-28905071(+)$1	263	133	140	13.6229
GAAGAAG	chr20:49181405-49181686(+)$1	281	168	175	17.6393
GAAGAAG	chr8:121457574-121457890(+)$1	316	299	306	17.6393
GAAGAAG	chr12:123089454-123089734(+)$1	280	1	8	17.6393
GAAGAAG	chr2:172582094-172582323(+)$1	229	83	90	17.6393
GAAGAAG	chr12:123089322-123089551(+)$1	229	133	140	17.6393
GAAGAAG	chr11:117155748-117155996(+)$1	248	136	143	17.6393
GAAGAAC	chr9:19340911-19341177(+)$1	266	149	156	13.8688
GCAGAAG	chr4:68374555-68374829(-)$1	274	133	140	13.5409
GAAGAAG	chr2:175982891-175983125(-)$1	234	66	73	17.6393
GAAGAAG	chr10:27826729-27827077(+)$1	348	200	207	17.6393
GAAGGAG	chr9:123230170-123230375(-)$1	205	123	130	13.6229
GAAGAAG	chr17:27424738-27424980(-)$1	242	80	87	17.6393
GAAGAUG	chr5:174935932-174936179(+)$1	247	192	199	13.2950
gaagaag	chr11:129992097-129992368(+)$1	271	172	179	17.6393
GAUGAAG	chr10:70515081-70515332(+)$1	251	69	76	13.6229
GAGGAAG	chr12:56563459-56563683(-)$1	224	18	25	14.0327
GAAGAAG	chr5:138699346-138699633(+)$1	287	244	251	17.6393
GAAGAAG	chr17:64684991-64685271(+)$1	280	96	103	17.6393
GAAGAAG	chr3:50102366-50102657(+)$1	291	168	175	17.6393
GAAGAAU	chr2:109432326-109432629(+)$1	303	154	161	13.7049
GGAGAAG	chr1:46073386-46073716(+)$1	330	9	16	13.8688
GAAGAAC	chr12:72057361-72057642(-)$1	281	12	19	13.8688
GAAGAAG	chrX:48661189-48661477(+)$1	288	162	169	17.6393
GAAGAGG	chr16:22330075-22330356(+)$1	281	186	193	13.2131
gaagaag	chr12:123466231-123466503(+)$1	272	64	71	17.6393
GAAGGAG	chr17:17991204-17991502(+)$1	298	165	172	13.6229
GAAGAUG	chr1:24989132-24989361(+)$1	229	41	48	13.2950
GGAGAAG	chr19:1809523-1809834(-)$1	311	153	160	13.8688
GAUGAAG	chr12:95546599-95546860(-)$1	261	91	98	13.6229
GAAGAAU	chrX:122754201-122754437(-)$1	236	37	44	13.7049
GAAGAAG	chr16:3713411-3713645(-)$1	234	144	151	17.6393
GAAGAAG	chr20:2638744-2639009(+)$1	265	12	19	17.6393

#otherMatches

#Struct PSSM
e[ammmm	chr17:27419897-27420119(-)$1	222	50	57	14.0327
#eeeeee	chr5:179044889-179045145(-)$1	256	150	157	13.2131
EEEEKKD	chr12:1025793-1026058(-)$1	265	12	19	13.8688
ee55555	chr5:60240919-60241209(+)$1	290	219	226	13.6229
=======	chr1:90482803-90483090(+)$1	287	112	119	13.9508
f55555f	chr7:102180367-102180624(-)$1	257	108	115	13.5409
#cccnnn	chrX:53439024-53439303(-)$1	279	100	107	13.8688
eeee:::	chr17:4790314-4790574(+)$1	260	122	129	14.0327
CCKKEEE	chr17:62498455-62498663(-)$1	208	29	36	13.6229
EEE::::	chr15:64422382-64422621(+)$1	239	52	59	13.8688
EEEYYGG	chr3:9984397-9984634(+)$1	237	223	230	14.0327
ddppppp	chr18:9570045-9570376(-)$1	331	104	111	14.0327
=====::	chr17:48818917-48819121(+)$1	204	124	131	13.9508
EEEEE{E	chr14:23946605-23946877(+)$1	272	129	136	17.6393
dddd555	chr7:106799829-106800154(+)$1	325	138	145	13.8688
hhhhhhh	chr19:12788003-12788244(-)$1	241	169	176	13.6229
HNNNNND	chr19:4499595-4499813(+)$1	218	14	21	13.8688
ee]a]hh	chr12:72311379-72311615(+)$1	236	110	117	13.8688
mmfffff	chr6:126332384-126332641(+)$1	257	141	148	14.0327
d22ccc2	chr8:124141304-124141558(+)$1	254	47	54	13.2950
bb::::E	chr20:34319792-34320088(-)$1	296	48	55	13.5409
2dddd88	chr1:52947018-52947352(-)$1	334	96	103	13.4590
oooooob	chr13:26793582-26793871(-)$1	289	121	128	13.9508
b:::::D	chr20:42162547-42162833(+)$1	286	141	148	13.9508
EEEEKKI	chr1:153735608-153735929(+)$1	321	15	22	14.0327
ccc::::	chr1:100609519-100609818(+)$1	299	125	132	13.9508
KCCC{FF	chr12:76442103-76442311(-)$1	208	30	37	17.6393
dddd:::	chr1:61553810-61554080(+)$1	270	133	140	17.6393
b]ccc]c	chr8:28904808-28905071(+)$1	263	133	140	13.6229
JJJJJcc	chr20:49181405-49181686(+)$1	281	168	175	17.6393
:::::::	chr8:121457574-121457890(+)$1	316	299	306	17.6393
eeeelll	chr12:123089454-123089734(+)$1	280	1	8	17.6393
=======	chr2:172582094-172582323(+)$1	229	83	90	17.6393
ooohhhh	chr12:123089322-123089551(+)$1	229	133	140	17.6393
JJJJJJJ	chr11:117155748-117155996(+)$1	248	136	143	17.6393
ennnnne	chr9:19340911-19341177(+)$1	266	149	156	13.8688
>>ccc]c	chr4:68374555-68374829(-)$1	274	133	140	13.5409
]eeeee4	chr2:175982891-175983125(-)$1	234	66	73	17.6393
JJJJJJJ	chr10:27826729-27827077(+)$1	348	200	207	17.6393
qqqqqii	chr9:123230170-123230375(-)$1	205	123	130	13.6229
coooooo	chr17:27424738-27424980(-)$1	242	80	87	17.6393
iiii:::	chr5:174935932-174936179(+)$1	247	192	199	13.2950
JJJJJJJ	chr11:129992097-129992368(+)$1	271	172	179	17.6393
rrrrrrc	chr10:70515081-70515332(+)$1	251	69	76	13.6229
tttttcc	chr12:56563459-56563683(-)$1	224	18	25	14.0327
dddoooo	chr5:138699346-138699633(+)$1	287	244	251	17.6393
qqqqqqb	chr17:64684991-64685271(+)$1	280	96	103	17.6393
bb[a!!c	chr3:50102366-50102657(+)$1	291	168	175	17.6393
dd]a]ii	chr2:109432326-109432629(+)$1	303	154	161	13.7049
EEEEEDD	chr1:46073386-46073716(+)$1	330	9	16	13.8688
a!!aeee	chr12:72057361-72057642(-)$1	281	12	19	13.8688
ccooooo	chrX:48661189-48661477(+)$1	288	162	169	17.6393
!======	chr16:22330075-22330356(+)$1	281	186	193	13.2131
:::::::	chr12:123466231-123466503(+)$1	272	64	71	17.6393
vvvvfff	chr17:17991204-17991502(+)$1	298	165	172	13.6229
bb]bb]b	chr1:24989132-24989361(+)$1	229	41	48	13.2950
D{CCC{C	chr19:1809523-1809834(-)$1	311	153	160	13.8688
fffff:a	chr12:95546599-95546860(-)$1	261	91	98	13.6229
iiiiiii	chrX:122754201-122754437(-)$1	236	37	44	13.7049
dddd22b	chr16:3713411-3713645(-)$1	234	144	151	17.6393
EEMMMME	chr20:2638744-2639009(+)$1	265	12	19	17.6393

#DB
(.(....	chr17:27419897-27420119(-)$1	1	50	57	14.0327
.((((((	chr5:179044889-179045145(-)$1	1	150	157	13.2131
((((..(	chr12:1025793-1026058(-)$1	1	12	19	13.8688
)).....	chr5:60240919-60241209(+)$1	1	219	226	13.6229
)))))))	chr1:90482803-90483090(+)$1	1	112	119	13.9508
).....)	chr7:102180367-102180624(-)$1	1	108	115	13.5409
.(((...	chrX:53439024-53439303(-)$1	1	100	107	13.8688
))))...	chr17:4790314-4790574(+)$1	1	122	129	14.0327
((..(((	chr17:62498455-62498663(-)$1	1	29	36	13.6229
(((....	chr15:64422382-64422621(+)$1	1	52	59	13.8688
)))..))	chr3:9984397-9984634(+)$1	1	223	230	14.0327
((.....	chr18:9570045-9570376(-)$1	1	104	111	14.0327
)))))..	chr17:48818917-48819121(+)$1	1	124	131	13.9508
(((((.(	chr14:23946605-23946877(+)$1	1	129	136	17.6393
))))...	chr7:106799829-106800154(+)$1	1	138	145	13.8688
)))))))	chr19:12788003-12788244(-)$1	1	169	176	13.6229
(.....(	chr19:4499595-4499813(+)$1	1	14	21	13.8688
)).).))	chr12:72311379-72311615(+)$1	1	110	117	13.8688
..)))))	chr6:126332384-126332641(+)$1	1	141	148	14.0327
)..))).	chr8:124141304-124141558(+)$1	1	47	54	13.2950
))....)	chr20:34319792-34320088(-)$1	1	48	55	13.5409
.))))..	chr1:52947018-52947352(-)$1	1	96	103	13.4590
......)	chr13:26793582-26793871(-)$1	1	121	128	13.9508
).....)	chr20:42162547-42162833(+)$1	1	141	148	13.9508
((((..(	chr1:153735608-153735929(+)$1	1	15	22	14.0327
)))....	chr1:100609519-100609818(+)$1	1	125	132	13.9508
.(((.((	chr12:76442103-76442311(-)$1	1	30	37	17.6393
))))...	chr1:61553810-61554080(+)$1	1	133	140	17.6393
).))).)	chr8:28904808-28905071(+)$1	1	133	140	13.6229
(((((((	chr20:49181405-49181686(+)$1	1	168	175	17.6393
.......	chr8:121457574-121457890(+)$1	1	299	306	17.6393
((((...	chr12:123089454-123089734(+)$1	1	1	8	17.6393
)))))))	chr2:172582094-172582323(+)$1	1	83	90	17.6393
...))))	chr12:123089322-123089551(+)$1	1	133	140	17.6393
)))))))	chr11:117155748-117155996(+)$1	1	136	143	17.6393
(.....)	chr9:19340911-19341177(+)$1	1	149	156	13.8688
..))).)	chr4:68374555-68374829(-)$1	1	133	140	13.5409
.))))).	chr2:175982891-175983125(-)$1	1	66	73	17.6393
)))))))	chr10:27826729-27827077(+)$1	1	200	207	17.6393
.....))	chr9:123230170-123230375(-)$1	1	123	130	13.6229
(......	chr17:27424738-27424980(-)$1	1	80	87	17.6393
))))...	chr5:174935932-174936179(+)$1	1	192	199	13.2950
)))))))	chr11:129992097-129992368(+)$1	1	172	179	17.6393
......)	chr10:70515081-70515332(+)$1	1	69	76	13.6229
.....))	chr12:56563459-56563683(-)$1	1	18	25	14.0327
(((....	chr5:138699346-138699633(+)$1	1	244	251	17.6393
......)	chr17:64684991-64685271(+)$1	1	96	103	17.6393
((.(..(	chr3:50102366-50102657(+)$1	1	168	175	17.6393
)).).))	chr2:109432326-109432629(+)$1	1	154	161	13.7049
(((((((	chr1:46073386-46073716(+)$1	1	9	16	13.8688
(..((((	chr12:72057361-72057642(-)$1	1	12	19	13.8688
((.....	chrX:48661189-48661477(+)$1	1	162	169	17.6393
.((((((	chr16:22330075-22330356(+)$1	1	186	193	13.2131
.......	chr12:123466231-123466503(+)$1	1	64	71	17.6393
....)))	chr17:17991204-17991502(+)$1	1	165	172	13.6229
)).)).)	chr1:24989132-24989361(+)$1	1	41	48	13.2950
(.(((.(	chr19:1809523-1809834(-)$1	1	153	160	13.8688
))))).(	chr12:95546599-95546860(-)$1	1	91	98	13.6229
)))))))	chrX:122754201-122754437(-)$1	1	37	44	13.7049
))))..)	chr16:3713411-3713645(-)$1	1	144	151	17.6393
((....(	chr20:2638744-2639009(+)$1	1	12	19	17.6393

#PSSM
G : 0.95	g : 0.04	
A : 0.81	G : 0.08	C : 0.03	a : 0.03	g : 0.01	U : 0.01	
A : 0.78	G : 0.11	a : 0.04	U : 0.03	C : 0.01	
G : 0.95	g : 0.04	
A : 0.85	G : 0.09	a : 0.04	
A : 0.86	a : 0.04	U : 0.04	G : 0.03	
G : 0.77	A : 0.08	C : 0.06	g : 0.04	U : 0.03	

#score	916.2459016393453
#seq	61
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_CDS_m1_run1.nuc.txt

#NT
CAGG	chr14:70235475-70235714(+)$1	239	196	200	12.0000
CAGG	chr1:116932125-116932359(+)$1	234	212	216	12.0000
CAGG	chr7:5416451-5416717(-)$1	266	70	74	12.0000
CAGG	chr19:6696362-6696576(-)$1	214	9	13	12.0000
CAGG	chr1:55349278-55349510(-)$1	232	7	11	12.0000
CAGG	chr2:54872397-54872650(+)$1	253	28	32	12.0000
CAGG	chr3:133475708-133475953(+)$1	245	64	68	12.0000
CAGG	chr19:18499345-18499594(+)$1	249	39	43	12.0000
CAGG	chr2:216271928-216272144(-)$1	216	97	101	12.0000
CAGG	chr9:116824858-116825075(-)$1	217	77	81	12.0000
CAGG	chr7:5428141-5428478(-)$1	337	110	114	12.0000
CAGG	chr2:216248730-216248989(-)$1	259	79	83	12.0000
CAGG	chr6:168366379-168366658(+)$1	279	63	67	12.0000
CAGG	chr14:39648332-39648551(+)$1	219	1	5	12.0000
CAGG	chr16:46956088-46956449(+)$1	361	62	66	12.0000
CAGG	chr17:79817090-79817364(-)$1	274	186	190	12.0000
CAGG	chr6:144898134-144898388(+)$1	254	146	150	12.0000
CAGG	chr11:68192529-68192774(+)$1	245	37	41	12.0000
CAGG	chr7:47440283-47440556(-)$1	273	42	46	12.0000
CAGG	chr2:216261797-216262028(-)$1	231	29	33	12.0000
CAGG	chr3:133482937-133483215(+)$1	278	40	44	12.0000
CAGG	chr16:30080036-30080308(+)$1	272	27	31	12.0000
CAGG	chr2:216286714-216286918(-)$1	204	195	199	12.0000
CAGG	chr19:6678156-6678388(-)$1	232	3	7	12.0000
CAGG	chr7:45932488-45932717(+)$1	229	156	160	12.0000
CAGG	chr3:52837877-52838166(+)$1	289	228	232	12.0000
CAGG	chr20:60885702-60885976(-)$1	274	49	53	12.0000
CAGG	chr22:36685101-36685441(-)$1	340	21	25	12.0000
CAGG	chr9:71844982-71845235(+)$1	253	130	134	12.0000
CAGG	chr2:21246311-21246554(-)$1	243	4	8	12.0000
CAGG	chr20:61461019-61461271(+)$1	252	3	7	12.0000
CAGG	chr2:54858196-54858498(+)$1	302	72	76	12.0000
CAGG	chr13:99092925-99093174(+)$1	249	27	31	12.0000
CAGG	chr6:144774864-144775105(+)$1	241	50	54	12.0000
CAGG	chr1:245025661-245025938(-)$1	277	15	19	12.0000
CAGG	chr2:216272990-216273238(-)$1	248	215	219	12.0000
CAGG	chr9:124088689-124088943(+)$1	254	229	233	12.0000
CAGG	chr6:144768795-144769017(+)$1	222	2	6	12.0000
CAGG	chr11:62494198-62494517(-)$1	319	201	205	12.0000
CAGG	chr2:216249543-216249777(-)$1	234	172	176	12.0000
CAGG	chr2:216274630-216274873(-)$1	243	73	77	12.0000
CAGG	chr2:216243850-216244068(-)$1	218	60	64	12.0000
CAGG	chr3:52831791-52832049(+)$1	258	65	69	12.0000
CAGG	chr19:6686150-6686396(-)$1	246	1	5	12.0000
CAGG	chr2:216226666-216226898(-)$1	232	50	54	12.0000
CAGG	chr14:39645180-39645393(+)$1	213	98	102	12.0000
CAGG	chr1:19467820-19468118(-)$1	298	173	177	12.0000
cagg	chr11:71146718-71146986(-)$1	268	19	23	12.0000
CAGG	chr2:216283878-216284159(-)$1	281	59	63	12.0000
CAGG	chr19:6702045-6702293(-)$1	248	188	192	12.0000
CAGG	chr19:581220-581475(+)$1	255	31	35	12.0000
CAGG	chr3:186337573-186337803(+)$1	230	153	157	12.0000
CAGG	chr9:124094684-124095004(+)$1	320	169	173	12.0000
CAGG	chr3:133473234-133473515(+)$1	281	66	70	12.0000
CAGG	chrX:70793400-70793694(+)$1	294	256	260	12.0000
CAGG	chr7:75609554-75609784(+)$1	230	14	18	12.0000
CAGG	chrX:132670074-132670316(-)$1	242	42	46	12.0000
CAGG	chr3:48457714-48457970(-)$1	256	32	36	12.0000
CAGG	chr2:54858494-54858752(+)$1	258	77	81	12.0000
CAGG	chr10:101544348-101544565(+)$1	217	144	148	12.0000
CAGG	chr4:74319464-74319693(+)$1	229	14	18	12.0000
CAGG	chr19:6707751-6707983(-)$1	232	122	126	12.0000
CAGG	chr2:21245610-21245813(-)$1	203	182	186	12.0000
CAGG	chr8:27463826-27464125(-)$1	299	101	105	12.0000
CAGG	chr1:44010608-44010859(+)$1	251	27	31	12.0000
CAGG	chr2:216262423-216262661(-)$1	238	108	112	12.0000
CAGG	chr2:216248669-216248927(-)$1	258	17	21	12.0000
CAGG	chr16:75269611-75269893(-)$1	282	6	10	12.0000
CAGG	chr2:216271080-216271333(-)$1	253	116	120	12.0000
CAGG	chr3:186334897-186335105(+)$1	208	33	37	12.0000
CAGG	chr17:80195017-80195281(+)$1	264	89	93	12.0000
CAGG	chr19:6714268-6714496(-)$1	228	63	67	12.0000
CAGG	chr3:186334197-186334416(+)$1	219	31	35	12.0000
CAGG	chr12:57554577-57554828(+)$1	251	39	43	12.0000
CAGG	chr2:216269141-216269440(-)$1	299	149	153	12.0000
CAGG	chr7:45932468-45932688(+)$1	220	176	180	12.0000
CAGG	chr2:216262376-216262612(-)$1	236	59	63	12.0000
CAGG	chr6:132271890-132272217(-)$1	327	8	12	12.0000
CAGG	chr2:54855143-54855468(+)$1	325	87	91	12.0000
CAGG	chr11:1782464-1782705(-)$1	241	4	8	12.0000
CAGG	chr19:6697601-6697856(-)$1	255	48	52	12.0000

#otherMatches

#Struct PSSM
[ddd	chr3:186334875-186335087(+)$1	212	55	59	12.0000
eeee	chr14:70235475-70235714(+)$1	239	196	200	12.0000
F:ee	chr1:116932125-116932359(+)$1	234	212	216	12.0000
====	chr7:5416451-5416717(-)$1	266	70	74	12.0000
KKBB	chr19:6696362-6696576(-)$1	214	9	13	12.0000
E:dd	chr1:55349278-55349510(-)$1	232	7	11	12.0000
EEEE	chr2:54872397-54872650(+)$1	253	28	32	12.0000
gggg	chr3:133475708-133475953(+)$1	245	64	68	12.0000
ddd]	chr19:18499345-18499594(+)$1	249	39	43	12.0000
b[dd	chr2:216271928-216272144(-)$1	216	97	101	12.0000
LHHH	chr9:116824858-116825075(-)$1	217	77	81	12.0000
FKKE	chr7:5428141-5428478(-)$1	337	110	114	12.0000
eeee	chr2:216248730-216248989(-)$1	259	79	83	12.0000
]ccc	chr6:168366379-168366658(+)$1	279	63	67	12.0000
BKKB	chr14:39648332-39648551(+)$1	219	1	5	12.0000
DDDD	chr16:46956088-46956449(+)$1	361	62	66	12.0000
::::	chr17:79817090-79817364(-)$1	274	186	190	12.0000
ffff	chr6:144898134-144898388(+)$1	254	146	150	12.0000
::cc	chr11:68192529-68192774(+)$1	245	37	41	12.0000
C:dd	chr7:47440283-47440556(-)$1	273	42	46	12.0000
#fff	chr2:216261797-216262028(-)$1	231	29	33	12.0000
ssss	chr3:133482937-133483215(+)$1	278	40	44	12.0000
ttff	chr16:30080036-30080308(+)$1	272	27	31	12.0000
cc]b	chr2:216286714-216286918(-)$1	204	195	199	12.0000
ee[a	chr19:6678156-6678388(-)$1	232	3	7	12.0000
HHHH	chr7:45932488-45932717(+)$1	229	156	160	12.0000
dccc	chr3:52837877-52838166(+)$1	289	228	232	12.0000
Deee	chr20:60885702-60885976(-)$1	274	49	53	12.0000
gggg	chr22:36685101-36685441(-)$1	340	21	25	12.0000
a]dd	chr9:71844982-71845235(+)$1	253	130	134	12.0000
GGGG	chr2:21246311-21246554(-)$1	243	4	8	12.0000
:EEE	chr20:61461019-61461271(+)$1	252	3	7	12.0000
LCCC	chr2:54858196-54858498(+)$1	302	72	76	12.0000
dddd	chr13:99092925-99093174(+)$1	249	27	31	12.0000
i[bb	chr6:144774864-144775105(+)$1	241	50	54	12.0000
cddd	chr1:245025661-245025938(-)$1	277	15	19	12.0000
eeee	chr2:216272990-216273238(-)$1	248	215	219	12.0000
HHHH	chr9:124088689-124088943(+)$1	254	229	233	12.0000
::::	chr6:144768795-144769017(+)$1	222	2	6	12.0000
c333	chr11:62494198-62494517(-)$1	319	201	205	12.0000
DDDD	chr2:216249543-216249777(-)$1	234	172	176	12.0000
====	chr2:216274630-216274873(-)$1	243	73	77	12.0000
gggg	chr2:216243850-216244068(-)$1	218	60	64	12.0000
2fff	chr3:52831791-52832049(+)$1	258	65	69	12.0000
eeee	chr19:6686150-6686396(-)$1	246	1	5	12.0000
::dd	chr2:216226666-216226898(-)$1	232	50	54	12.0000
dddd	chr14:39645180-39645393(+)$1	213	98	102	12.0000
EEEE	chr1:19467820-19468118(-)$1	298	173	177	12.0000
gggC	chr11:71146718-71146986(-)$1	268	19	23	12.0000
ddds	chr2:216283878-216284159(-)$1	281	59	63	12.0000
a]ff	chr19:6702045-6702293(-)$1	248	188	192	12.0000
mmbb	chr19:581220-581475(+)$1	255	31	35	12.0000
eeee	chr3:186337573-186337803(+)$1	230	153	157	12.0000
nddd	chr9:124094684-124095004(+)$1	320	169	173	12.0000
::DD	chr3:133473234-133473515(+)$1	281	66	70	12.0000
::::	chrX:70793400-70793694(+)$1	294	256	260	12.0000
HHee	chr7:75609554-75609784(+)$1	230	14	18	12.0000
LLLC	chrX:132670074-132670316(-)$1	242	42	46	12.0000
iiii	chr3:48457714-48457970(-)$1	256	32	36	12.0000
ffff	chr2:54858494-54858752(+)$1	258	77	81	12.0000
ffff	chr10:101544348-101544565(+)$1	217	144	148	12.0000
eedd	chr4:74319464-74319693(+)$1	229	14	18	12.0000
HHHH	chr19:6707751-6707983(-)$1	232	122	126	12.0000
dddd	chr2:21245610-21245813(-)$1	203	182	186	12.0000
eeee	chr8:27463826-27464125(-)$1	299	101	105	12.0000
DDEE	chr1:44010608-44010859(+)$1	251	27	31	12.0000
]iii	chr2:216262423-216262661(-)$1	238	108	112	12.0000
eeee	chr2:216248669-216248927(-)$1	258	17	21	12.0000
:fff	chr16:75269611-75269893(-)$1	282	6	10	12.0000
::bb	chr2:216271080-216271333(-)$1	253	116	120	12.0000
GGGG	chr3:186334897-186335105(+)$1	208	33	37	12.0000
eeee	chr17:80195017-80195281(+)$1	264	89	93	12.0000
gggg	chr19:6714268-6714496(-)$1	228	63	67	12.0000
>>gg	chr3:186334197-186334416(+)$1	219	31	35	12.0000
e!!c	chr12:57554577-57554828(+)$1	251	39	43	12.0000
cccq	chr2:216269141-216269440(-)$1	299	149	153	12.0000
ssss	chr7:45932468-45932688(+)$1	220	176	180	12.0000
]bbd	chr2:216262376-216262612(-)$1	236	59	63	12.0000
[hhh	chr6:132271890-132272217(-)$1	327	8	12	12.0000
FFFF	chr2:54855143-54855468(+)$1	325	87	91	12.0000
:FFF	chr11:1782464-1782705(-)$1	241	4	8	12.0000
!ddd	chr19:6697601-6697856(-)$1	255	48	52	12.0000

#DB
.(((	chr3:186334875-186335087(+)$1	1	55	59	12.0000
((((	chr14:70235475-70235714(+)$1	1	196	200	12.0000
).((	chr1:116932125-116932359(+)$1	1	212	216	12.0000
((((	chr7:5416451-5416717(-)$1	1	70	74	12.0000
..((	chr19:6696362-6696576(-)$1	1	9	13	12.0000
(.((	chr1:55349278-55349510(-)$1	1	7	11	12.0000
((((	chr2:54872397-54872650(+)$1	1	28	32	12.0000
((((	chr3:133475708-133475953(+)$1	1	64	68	12.0000
))).	chr19:18499345-18499594(+)$1	1	39	43	12.0000
(.((	chr2:216271928-216272144(-)$1	1	97	101	12.0000
.(((	chr9:116824858-116825075(-)$1	1	77	81	12.0000
(..(	chr7:5428141-5428478(-)$1	1	110	114	12.0000
((((	chr2:216248730-216248989(-)$1	1	79	83	12.0000
.)))	chr6:168366379-168366658(+)$1	1	63	67	12.0000
(..(	chr14:39648332-39648551(+)$1	1	1	5	12.0000
((((	chr16:46956088-46956449(+)$1	1	62	66	12.0000
....	chr17:79817090-79817364(-)$1	1	186	190	12.0000
))))	chr6:144898134-144898388(+)$1	1	146	150	12.0000
..((	chr11:68192529-68192774(+)$1	1	37	41	12.0000
(.((	chr7:47440283-47440556(-)$1	1	42	46	12.0000
.(((	chr2:216261797-216262028(-)$1	1	29	33	12.0000
....	chr3:133482937-133483215(+)$1	1	40	44	12.0000
..))	chr16:30080036-30080308(+)$1	1	27	31	12.0000
)).)	chr2:216286714-216286918(-)$1	1	195	199	12.0000
((.(	chr19:6678156-6678388(-)$1	1	3	7	12.0000
))))	chr7:45932488-45932717(+)$1	1	156	160	12.0000
)(((	chr3:52837877-52838166(+)$1	1	228	232	12.0000
((((	chr20:60885702-60885976(-)$1	1	49	53	12.0000
))))	chr22:36685101-36685441(-)$1	1	21	25	12.0000
).))	chr9:71844982-71845235(+)$1	1	130	134	12.0000
((((	chr2:21246311-21246554(-)$1	1	4	8	12.0000
.(((	chr20:61461019-61461271(+)$1	1	3	7	12.0000
.(((	chr2:54858196-54858498(+)$1	1	72	76	12.0000
((((	chr13:99092925-99093174(+)$1	1	27	31	12.0000
(.((	chr6:144774864-144775105(+)$1	1	50	54	12.0000
((((	chr1:245025661-245025938(-)$1	1	15	19	12.0000
))))	chr2:216272990-216273238(-)$1	1	215	219	12.0000
))))	chr9:124088689-124088943(+)$1	1	229	233	12.0000
....	chr6:144768795-144769017(+)$1	1	2	6	12.0000
)...	chr11:62494198-62494517(-)$1	1	201	205	12.0000
))))	chr2:216249543-216249777(-)$1	1	172	176	12.0000
((((	chr2:216274630-216274873(-)$1	1	73	77	12.0000
))))	chr2:216243850-216244068(-)$1	1	60	64	12.0000
.)))	chr3:52831791-52832049(+)$1	1	65	69	12.0000
((((	chr19:6686150-6686396(-)$1	1	1	5	12.0000
..((	chr2:216226666-216226898(-)$1	1	50	54	12.0000
((((	chr14:39645180-39645393(+)$1	1	98	102	12.0000
((((	chr1:19467820-19468118(-)$1	1	173	177	12.0000
)))(	chr11:71146718-71146986(-)$1	1	19	23	12.0000
(((.	chr2:216283878-216284159(-)$1	1	59	63	12.0000
).))	chr19:6702045-6702293(-)$1	1	188	192	12.0000
..))	chr19:581220-581475(+)$1	1	31	35	12.0000
))))	chr3:186337573-186337803(+)$1	1	153	157	12.0000
.)))	chr9:124094684-124095004(+)$1	1	169	173	12.0000
..((	chr3:133473234-133473515(+)$1	1	66	70	12.0000
....	chrX:70793400-70793694(+)$1	1	256	260	12.0000
((((	chr7:75609554-75609784(+)$1	1	14	18	12.0000
...(	chrX:132670074-132670316(-)$1	1	42	46	12.0000
((((	chr3:48457714-48457970(-)$1	1	32	36	12.0000
((((	chr2:54858494-54858752(+)$1	1	77	81	12.0000
))))	chr10:101544348-101544565(+)$1	1	144	148	12.0000
((((	chr4:74319464-74319693(+)$1	1	14	18	12.0000
))))	chr19:6707751-6707983(-)$1	1	122	126	12.0000
))))	chr2:21245610-21245813(-)$1	1	182	186	12.0000
))))	chr8:27463826-27464125(-)$1	1	101	105	12.0000
((((	chr1:44010608-44010859(+)$1	1	27	31	12.0000
.)))	chr2:216262423-216262661(-)$1	1	108	112	12.0000
((((	chr2:216248669-216248927(-)$1	1	17	21	12.0000
.(((	chr16:75269611-75269893(-)$1	1	6	10	12.0000
..((	chr2:216271080-216271333(-)$1	1	116	120	12.0000
((((	chr3:186334897-186335105(+)$1	1	33	37	12.0000
((((	chr17:80195017-80195281(+)$1	1	89	93	12.0000
((((	chr19:6714268-6714496(-)$1	1	63	67	12.0000
..))	chr3:186334197-186334416(+)$1	1	31	35	12.0000
(..(	chr12:57554577-57554828(+)$1	1	39	43	12.0000
(((.	chr2:216269141-216269440(-)$1	1	149	153	12.0000
....	chr7:45932468-45932688(+)$1	1	176	180	12.0000
.))(	chr2:216262376-216262612(-)$1	1	59	63	12.0000
.(((	chr6:132271890-132272217(-)$1	1	8	12	12.0000
((((	chr2:54855143-54855468(+)$1	1	87	91	12.0000
.(((	chr11:1782464-1782705(-)$1	1	4	8	12.0000
.(((	chr19:6697601-6697856(-)$1	1	48	52	12.0000

#PSSM
C : 0.98	c : 0.01	
A : 0.98	a : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	

#score	984.0000000000001
#seq	82
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_UTR_m1_run1.nuc.txt

#NT
UGUAAUU	chr9:127998515-127998793(-)$1	278	9	16	13.8846
UGAAUUU	chr12:76449748-76449964(-)$1	216	97	104	14.0769
AGAAAUU	chr12:21788376-21788670(-)$1	294	214	221	12.9230
UGAAAUU	chr2:187368764-187369056(+)$1	292	143	150	17.5384
UGUAAUU	chr6:74229656-74229880(-)$1	224	6	13	13.8846
UGGAAUU	chr19:8532318-8532535(+)$1	217	200	207	13.8846
UGAAAUU	chr2:47388758-47389000(-)$1	242	234	241	17.5384
UGAAGUU	chr17:8076658-8076871(-)$1	213	162	169	14.0769
UAAAAUU	chr8:124348512-124348762(-)$1	250	46	53	13.6923
UGAAAUU	chr6:31785376-31785663(+)$1	287	182	189	17.5384
UGAAAUU	chr12:104341409-104341685(+)$1	276	72	79	17.5384
UGAAAUU	chr15:66795598-66795830(-)$1	232	187	194	17.5384
UGAAAUU	chr12:104341332-104341586(+)$1	254	149	156	17.5384
UUAAAUU	chr8:97243080-97243373(-)$1	293	265	272	13.4999
UAAAAUU	chr6:27809333-27809577(+)$1	244	76	83	13.6923
UGAAAUU	chr3:184052710-184053008(+)$1	298	227	234	17.5384
UGGAAUU	chr10:79800301-79800545(+)$1	244	4	11	13.8846
UGAAUUU	chr12:76449740-76449948(-)$1	208	81	88	14.0769
UGAAAUU	chr10:70546202-70546434(+)$1	232	58	65	17.5384
UGAAAAU	chr17:79801302-79801592(-)$1	290	49	56	13.3076
ugaACUU	chr8:33370954-33371172(+)$1	218	142	149	14.0769
UGAAAAU	chr18:47017930-47018195(-)$1	265	249	256	13.3076
ugaACUU	chr8:33370926-33371150(+)$1	224	170	177	14.0769
UCAAAUU	chr6:31804772-31805004(+)$1	232	212	219	13.4999
UGAAGUU	chr17:8076671-8076902(-)$1	231	193	200	14.0769

#otherMatches

#Struct PSSM
lccc333	chr13:107196029-107196277(-)$1	248	77	84	13.6923
CCCCC{F	chr9:127998515-127998793(-)$1	278	9	16	13.8846
a]=====	chr12:76449748-76449964(-)$1	216	97	104	14.0769
bb####d	chr12:21788376-21788670(-)$1	294	214	221	12.9230
:::::ee	chr2:187368764-187369056(+)$1	292	143	150	17.5384
DD:::::	chr6:74229656-74229880(-)$1	224	6	13	13.8846
:::::::	chr19:8532318-8532535(+)$1	217	200	207	13.8846
DD:::::	chr2:47388758-47389000(-)$1	242	234	241	17.5384
mmmdddd	chr17:8076658-8076871(-)$1	213	162	169	14.0769
flllfff	chr8:124348512-124348762(-)$1	250	46	53	13.6923
[ffffff	chr6:31785376-31785663(+)$1	287	182	189	17.5384
eee22ff	chr12:104341409-104341685(+)$1	276	72	79	17.5384
EEEYYDD	chr15:66795598-66795830(-)$1	232	187	194	17.5384
eee22ff	chr12:104341332-104341586(+)$1	254	149	156	17.5384
~~~~HHH	chr8:97243080-97243373(-)$1	293	265	272	13.4999
nneeeee	chr6:27809333-27809577(+)$1	244	76	83	13.6923
e999999	chr3:184052710-184053008(+)$1	298	227	234	17.5384
ggg"""d	chr10:79800301-79800545(+)$1	244	4	11	13.8846
a]=====	chr12:76449740-76449948(-)$1	208	81	88	14.0769
^^^^^^^	chr10:70546202-70546434(+)$1	232	58	65	17.5384
=======	chr17:79801302-79801592(-)$1	290	49	56	13.3076
2a333gg	chr8:33370954-33371172(+)$1	218	142	149	14.0769
dmmmmdd	chr18:47017930-47018195(-)$1	265	249	256	13.3076
2a333gg	chr8:33370926-33371150(+)$1	224	170	177	14.0769
:::::::	chr6:31804772-31805004(+)$1	232	212	219	13.4999
C}A}GGG	chr17:8076671-8076902(-)$1	231	193	200	14.0769

#DB
.)))...	chr13:107196029-107196277(-)$1	1	77	84	13.6923
(((((.(	chr9:127998515-127998793(-)$1	1	9	16	13.8846
).)))))	chr12:76449748-76449964(-)$1	1	97	104	14.0769
((....(	chr12:21788376-21788670(-)$1	1	214	221	12.9230
.....((	chr2:187368764-187369056(+)$1	1	143	150	17.5384
((.....	chr6:74229656-74229880(-)$1	1	6	13	13.8846
.......	chr19:8532318-8532535(+)$1	1	200	207	13.8846
)).....	chr2:47388758-47389000(-)$1	1	234	241	17.5384
...))))	chr17:8076658-8076871(-)$1	1	162	169	14.0769
(...)))	chr8:124348512-124348762(-)$1	1	46	53	13.6923
.((((((	chr6:31785376-31785663(+)$1	1	182	189	17.5384
)))..))	chr12:104341409-104341685(+)$1	1	72	79	17.5384
)))..))	chr15:66795598-66795830(-)$1	1	187	194	17.5384
)))..))	chr12:104341332-104341586(+)$1	1	149	156	17.5384
....)))	chr8:97243080-97243373(-)$1	1	265	272	13.4999
..)))))	chr6:27809333-27809577(+)$1	1	76	83	13.6923
)......	chr3:184052710-184053008(+)$1	1	227	234	17.5384
(((...(	chr10:79800301-79800545(+)$1	1	4	11	13.8846
).)))))	chr12:76449740-76449948(-)$1	1	81	88	14.0769
.......	chr10:70546202-70546434(+)$1	1	58	65	17.5384
(((((((	chr17:79801302-79801592(-)$1	1	49	56	13.3076
.)...))	chr8:33370954-33371172(+)$1	1	142	149	14.0769
(....))	chr18:47017930-47018195(-)$1	1	249	256	13.3076
.)...))	chr8:33370926-33371150(+)$1	1	170	177	14.0769
.......	chr6:31804772-31805004(+)$1	1	212	219	13.4999
).).)))	chr17:8076671-8076902(-)$1	1	193	200	14.0769

#PSSM
U : 0.88	u : 0.07	A : 0.03	
G : 0.76	A : 0.07	g : 0.07	U : 0.03	C : 0.03	
A : 0.73	U : 0.07	G : 0.07	a : 0.07	C : 0.03	
A : 0.99	
A : 0.76	U : 0.07	G : 0.07	C : 0.07	
U : 0.92	A : 0.07	
U : 0.99	

#score	387.92307692307696
#seq	26
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_CDS_m3_run2.nuc.txt

#NT
UCUU	chr11:1010521-1010826(+)$1	305	133	137	11.9999
UCUU	chr6:75953331-75953620(-)$1	289	10	14	11.9999
UCUU	chr11:8707200-8707413(+)$1	213	16	20	11.9999
UCUU	chr11:134118111-134118460(-)$1	349	292	296	11.9999
UCUU	chr21:34925898-34926172(+)$1	274	123	127	11.9999
UCUU	chr17:37006343-37006567(-)$1	224	25	29	11.9999
UCUU	chr10:102289466-102289722(-)$1	256	18	22	11.9999
UCUU	chr11:75111661-75111874(+)$1	213	92	96	11.9999
UCUU	chr8:101725300-101725509(-)$1	209	71	75	11.9999
UCUU	chr11:62286004-62286261(-)$1	257	155	159	11.9999
UCUU	chr2:101622647-101622942(+)$1	295	247	251	11.9999
UCUU	chr4:1919834-1920164(+)$1	330	16	20	11.9999
UCUU	chr15:49575691-49576013(+)$1	322	60	64	11.9999
ucuu	chr13:29252090-29252402(+)$1	312	5	9	11.9999
UCUU	chr11:18428800-18429019(+)$1	219	30	34	11.9999
UCUU	chr2:55461995-55462198(+)$1	203	31	35	11.9999
UCUU	chr6:74227654-74227872(-)$1	218	33	37	11.9999
UCUU	chr2:55461882-55462093(+)$1	211	40	44	11.9999
UCUU	chr2:9098584-9098871(-)$1	287	91	95	11.9999
UCUU	chr3:49135329-49135588(-)$1	259	121	125	11.9999
UCUU	chr5:130495122-130495394(-)$1	272	92	96	11.9999
UCUU	chr2:55461875-55462082(+)$1	207	47	51	11.9999
UCUU	chr4:73950929-73951201(-)$1	272	79	83	11.9999
UCUU	chr8:101725249-101725481(-)$1	232	43	47	11.9999
UCUU	chr12:131360366-131360662(+)$1	296	49	53	11.9999
UCUU	chr1:228645390-228645610(-)$1	220	37	41	11.9999
UCUU	chr2:10580663-10580955(-)$1	292	37	41	11.9999
UCUU	chr1:45223185-45223418(+)$1	233	34	38	11.9999
UCUU	chr6:27775855-27776111(+)$1	256	97	101	11.9999
UCUU	chr19:10407071-10407359(+)$1	288	192	196	11.9999
UCUU	chr6:160200855-160201119(-)$1	264	29	33	11.9999
UCUU	chr3:186506874-186507107(+)$1	233	23	27	11.9999
UCUU	chr10:103546064-103546332(-)$1	268	157	161	11.9999
UCUU	chr9:138774658-138775023(-)$1	365	56	60	11.9999
UCUU	chr12:57881774-57882070(+)$1	296	279	283	11.9999
UCUU	chr12:21794931-21795157(-)$1	226	105	109	11.9999
UCUU	chr6:26033656-26033891(-)$1	235	62	66	11.9999
UCUU	chr20:62421330-62421600(-)$1	270	27	31	11.9999
UCUU	chr3:37092032-37092344(+)$1	312	95	99	11.9999
UCUU	chr6:26217071-26217326(+)$1	255	56	60	11.9999
UCUU	chr16:68160250-68160531(+)$1	281	78	82	11.9999
UCUU	chr2:55461870-55462075(+)$1	205	52	56	11.9999
ucuu	chr11:32615311-32615586(+)$1	275	30	34	11.9999
UCUU	chr2:55461974-55462184(+)$1	210	0	4	11.9999
UCUU	chr3:186505532-186505770(+)$1	238	86	90	11.9999
UCUU	chr17:16285119-16285330(+)$1	211	109	113	11.9999
UCUU	chr2:55460416-55460654(+)$1	238	213	217	11.9999
UCUU	chr22:46096061-46096357(+)$1	296	31	35	11.9999
UCUU	chr18:43669702-43670023(-)$1	321	49	53	11.9999
UCUU	chr11:118279620-118279917(+)$1	297	83	87	11.9999
UCUU	chr11:125442261-125442553(+)$1	292	46	50	11.9999
UCUU	chr4:109543623-109543837(+)$1	214	25	29	11.9999
UCUU	chr2:168726232-168726500(-)$1	268	22	26	11.9999
UCUU	chr5:179132588-179132860(+)$1	272	33	37	11.9999
UCUU	chr6:26204758-26205026(+)$1	268	23	27	11.9999
UCUU	chr1:161183859-161184116(+)$1	257	162	166	11.9999
UCUU	chr11:75114971-75115275(+)$1	304	19	23	11.9999
UCUU	chrX:118604878-118605109(+)$1	231	111	115	11.9999
UCUU	chr14:35786389-35786701(+)$1	312	68	72	11.9999
UCUU	chr1:27059066-27059368(+)$1	302	89	93	11.9999
UCUU	chr10:126370327-126370636(-)$1	309	242	246	11.9999
UCUU	chr16:68155907-68156155(+)$1	248	15	19	11.9999
uCUU	chr2:62099324-62099552(-)$1	228	58	62	11.9999
UCUU	chr3:169866827-169867132(-)$1	305	90	94	11.9999
UCUU	chr1:203830665-203830903(+)$1	238	60	64	11.9999
UCUU	chr17:41154787-41155038(+)$1	251	83	87	11.9999
UCUU	chr21:46945664-46945966(-)$1	302	81	85	11.9999
UCUU	chr3:47469976-47470241(-)$1	265	25	29	11.9999
UCUU	chr6:75949929-75950200(-)$1	271	30	34	11.9999
UCUU	chr17:37009178-37009396(-)$1	218	3	7	11.9999
UCUU	chr12:54677500-54677722(+)$1	222	79	83	11.9999
UCUU	chr18:43666031-43666296(-)$1	265	227	231	11.9999
UCUU	chrX:48432848-48433064(+)$1	216	18	22	11.9999
UCUU	chr4:109543595-109543823(+)$1	228	53	57	11.9999
UCUU	chr2:74274875-74275180(+)$1	305	27	31	11.9999
ucuu	chr11:10874989-10875259(-)$1	270	44	48	11.9999
UCUU	chr18:29691628-29691927(+)$1	299	275	279	11.9999
UCUU	chr6:74229027-74229265(-)$1	238	11	15	11.9999
UCUU	chr17:45734137-45734443(+)$1	306	63	67	11.9999
ucuu	chr17:80858430-80858711(+)$1	281	56	60	11.9999
UCUU	chr11:8707213-8707419(+)$1	206	3	7	11.9999
UCUU	chr4:39459940-39460162(-)$1	222	164	168	11.9999
UCUU	chr4:39459756-39459992(-)$1	236	7	11	11.9999
UCUU	chr6:160199915-160200211(-)$1	296	35	39	11.9999
UCUU	chr3:101404610-101404863(-)$1	253	11	15	11.9999
UCUU	chr1:247320212-247320506(-)$1	294	74	78	11.9999
UCUU	chr12:98994911-98995157(+)$1	246	26	30	11.9999

#otherMatches

#Struct PSSM
::ii	chr2:55461866-55462068(+)$1	202	56	60	11.9999
GJJJ	chr11:1010521-1010826(+)$1	305	133	137	11.9999
:ccc	chr6:75953331-75953620(-)$1	289	10	14	11.9999
cc!!	chr11:8707200-8707413(+)$1	213	16	20	11.9999
0000	chr11:134118111-134118460(-)$1	349	292	296	11.9999
ffff	chr21:34925898-34926172(+)$1	274	123	127	11.9999
FF::	chr17:37006343-37006567(-)$1	224	25	29	11.9999
::::	chr10:102289466-102289722(-)$1	256	18	22	11.9999
hhhh	chr11:75111661-75111874(+)$1	213	92	96	11.9999
^^^^	chr8:101725300-101725509(-)$1	209	71	75	11.9999
ff""	chr11:62286004-62286261(-)$1	257	155	159	11.9999
YYHH	chr2:101622647-101622942(+)$1	295	247	251	11.9999
GGGG	chr4:1919834-1920164(+)$1	330	16	20	11.9999
::ee	chr15:49575691-49576013(+)$1	322	60	64	11.9999
f$$$	chr13:29252090-29252402(+)$1	312	5	9	11.9999
eee"	chr11:18428800-18429019(+)$1	219	30	34	11.9999
eeee	chr2:55461995-55462198(+)$1	203	31	35	11.9999
::::	chr6:74227654-74227872(-)$1	218	33	37	11.9999
::ii	chr2:55461882-55462093(+)$1	211	40	44	11.9999
hh::	chr2:9098584-9098871(-)$1	287	91	95	11.9999
cc22	chr3:49135329-49135588(-)$1	259	121	125	11.9999
gggg	chr5:130495122-130495394(-)$1	272	92	96	11.9999
dddh	chr2:55461875-55462082(+)$1	207	47	51	11.9999
NNNF	chr4:73950929-73951201(-)$1	272	79	83	11.9999
77ff	chr8:101725249-101725481(-)$1	232	43	47	11.9999
::::	chr12:131360366-131360662(+)$1	296	49	53	11.9999
e22c	chr1:228645390-228645610(-)$1	220	37	41	11.9999
iiii	chr2:10580663-10580955(-)$1	292	37	41	11.9999
::::	chr1:45223185-45223418(+)$1	233	34	38	11.9999
ccoo	chr6:27775855-27776111(+)$1	256	97	101	11.9999
hhhh	chr19:10407071-10407359(+)$1	288	192	196	11.9999
ee[i	chr6:160200855-160201119(-)$1	264	29	33	11.9999
GGGG	chr3:186506874-186507107(+)$1	233	23	27	11.9999
[ggg	chr10:103546064-103546332(-)$1	268	157	161	11.9999
ELLL	chr9:138774658-138775023(-)$1	365	56	60	11.9999
}GGG	chr12:57881774-57882070(+)$1	296	279	283	11.9999
qqqq	chr12:21794931-21795157(-)$1	226	105	109	11.9999
444c	chr6:26033656-26033891(-)$1	235	62	66	11.9999
hhhh	chr20:62421330-62421600(-)$1	270	27	31	11.9999
bbll	chr3:37092032-37092344(+)$1	312	95	99	11.9999
HHHH	chr6:26217071-26217326(+)$1	255	56	60	11.9999
::::	chr16:68160250-68160531(+)$1	281	78	82	11.9999
::ii	chr2:55461870-55462075(+)$1	205	52	56	11.9999
GGG:	chr11:32615311-32615586(+)$1	275	30	34	11.9999
dddd	chr2:55461974-55462184(+)$1	210	0	4	11.9999
::::	chr3:186505532-186505770(+)$1	238	86	90	11.9999
eee3	chr17:16285119-16285330(+)$1	211	109	113	11.9999
GGGG	chr2:55460416-55460654(+)$1	238	213	217	11.9999
::::	chr22:46096061-46096357(+)$1	296	31	35	11.9999
eee$	chr18:43669702-43670023(-)$1	321	49	53	11.9999
C{DD	chr11:118279620-118279917(+)$1	297	83	87	11.9999
::::	chr11:125442261-125442553(+)$1	292	46	50	11.9999
gggg	chr4:109543623-109543837(+)$1	214	25	29	11.9999
"""c	chr2:168726232-168726500(-)$1	268	22	26	11.9999
ggg[	chr5:179132588-179132860(+)$1	272	33	37	11.9999
ccco	chr6:26204758-26205026(+)$1	268	23	27	11.9999
hhhh	chr1:161183859-161184116(+)$1	257	162	166	11.9999
FDDD	chr11:75114971-75115275(+)$1	304	19	23	11.9999
eeee	chrX:118604878-118605109(+)$1	231	111	115	11.9999
cccl	chr14:35786389-35786701(+)$1	312	68	72	11.9999
vvvv	chr1:27059066-27059368(+)$1	302	89	93	11.9999
b]dd	chr10:126370327-126370636(-)$1	309	242	246	11.9999
:::d	chr16:68155907-68156155(+)$1	248	15	19	11.9999
::ff	chr2:62099324-62099552(-)$1	228	58	62	11.9999
vvvv	chr3:169866827-169867132(-)$1	305	90	94	11.9999
rrrr	chr1:203830665-203830903(+)$1	238	60	64	11.9999
IIII	chr17:41154787-41155038(+)$1	251	83	87	11.9999
ffff	chr21:46945664-46945966(-)$1	302	81	85	11.9999
DDDW	chr3:47469976-47470241(-)$1	265	25	29	11.9999
gggg	chr6:75949929-75950200(-)$1	271	30	34	11.9999
::::	chr17:37009178-37009396(-)$1	218	3	7	11.9999
CCCE	chr12:54677500-54677722(+)$1	222	79	83	11.9999
hhhh	chr18:43666031-43666296(-)$1	265	227	231	11.9999
::::	chrX:48432848-48433064(+)$1	216	18	22	11.9999
gggg	chr4:109543595-109543823(+)$1	228	53	57	11.9999
::::	chr2:74274875-74275180(+)$1	305	27	31	11.9999
gggr	chr11:10874989-10875259(-)$1	270	44	48	11.9999
HHHH	chr18:29691628-29691927(+)$1	299	275	279	11.9999
eeee	chr6:74229027-74229265(-)$1	238	11	15	11.9999
==yy	chr17:45734137-45734443(+)$1	306	63	67	11.9999
oooo	chr17:80858430-80858711(+)$1	281	56	60	11.9999
::==	chr11:8707213-8707419(+)$1	206	3	7	11.9999
eeee	chr4:39459940-39460162(-)$1	222	164	168	11.9999
::::	chr4:39459756-39459992(-)$1	236	7	11	11.9999
ddll	chr6:160199915-160200211(-)$1	296	35	39	11.9999
EMMM	chr3:101404610-101404863(-)$1	253	11	15	11.9999
f444	chr1:247320212-247320506(-)$1	294	74	78	11.9999
eeee	chr12:98994911-98995157(+)$1	246	26	30	11.9999

#DB
..((	chr2:55461866-55462068(+)$1	1	56	60	11.9999
((((	chr11:1010521-1010826(+)$1	1	133	137	11.9999
.(((	chr6:75953331-75953620(-)$1	1	10	14	11.9999
((..	chr11:8707200-8707413(+)$1	1	16	20	11.9999
....	chr11:134118111-134118460(-)$1	1	292	296	11.9999
((((	chr21:34925898-34926172(+)$1	1	123	127	11.9999
((..	chr17:37006343-37006567(-)$1	1	25	29	11.9999
....	chr10:102289466-102289722(-)$1	1	18	22	11.9999
((((	chr11:75111661-75111874(+)$1	1	92	96	11.9999
....	chr8:101725300-101725509(-)$1	1	71	75	11.9999
((..	chr11:62286004-62286261(-)$1	1	155	159	11.9999
..))	chr2:101622647-101622942(+)$1	1	247	251	11.9999
((((	chr4:1919834-1920164(+)$1	1	16	20	11.9999
..((	chr15:49575691-49576013(+)$1	1	60	64	11.9999
(...	chr13:29252090-29252402(+)$1	1	5	9	11.9999
(((.	chr11:18428800-18429019(+)$1	1	30	34	11.9999
))))	chr2:55461995-55462198(+)$1	1	31	35	11.9999
....	chr6:74227654-74227872(-)$1	1	33	37	11.9999
..((	chr2:55461882-55462093(+)$1	1	40	44	11.9999
))..	chr2:9098584-9098871(-)$1	1	91	95	11.9999
))..	chr3:49135329-49135588(-)$1	1	121	125	11.9999
))))	chr5:130495122-130495394(-)$1	1	92	96	11.9999
)))(	chr2:55461875-55462082(+)$1	1	47	51	11.9999
...(	chr4:73950929-73951201(-)$1	1	79	83	11.9999
..))	chr8:101725249-101725481(-)$1	1	43	47	11.9999
....	chr12:131360366-131360662(+)$1	1	49	53	11.9999
)..)	chr1:228645390-228645610(-)$1	1	37	41	11.9999
))))	chr2:10580663-10580955(-)$1	1	37	41	11.9999
....	chr1:45223185-45223418(+)$1	1	34	38	11.9999
((..	chr6:27775855-27776111(+)$1	1	97	101	11.9999
))))	chr19:10407071-10407359(+)$1	1	192	196	11.9999
((.(	chr6:160200855-160201119(-)$1	1	29	33	11.9999
((((	chr3:186506874-186507107(+)$1	1	23	27	11.9999
.(((	chr10:103546064-103546332(-)$1	1	157	161	11.9999
(...	chr9:138774658-138775023(-)$1	1	56	60	11.9999
.)))	chr12:57881774-57882070(+)$1	1	279	283	11.9999
....	chr12:21794931-21795157(-)$1	1	105	109	11.9999
...)	chr6:26033656-26033891(-)$1	1	62	66	11.9999
((((	chr20:62421330-62421600(-)$1	1	27	31	11.9999
((..	chr3:37092032-37092344(+)$1	1	95	99	11.9999
((((	chr6:26217071-26217326(+)$1	1	56	60	11.9999
....	chr16:68160250-68160531(+)$1	1	78	82	11.9999
..((	chr2:55461870-55462075(+)$1	1	52	56	11.9999
(((.	chr11:32615311-32615586(+)$1	1	30	34	11.9999
((((	chr2:55461974-55462184(+)$1	1	0	4	11.9999
....	chr3:186505532-186505770(+)$1	1	86	90	11.9999
))).	chr17:16285119-16285330(+)$1	1	109	113	11.9999
))))	chr2:55460416-55460654(+)$1	1	213	217	11.9999
....	chr22:46096061-46096357(+)$1	1	31	35	11.9999
(((.	chr18:43669702-43670023(-)$1	1	49	53	11.9999
(.((	chr11:118279620-118279917(+)$1	1	83	87	11.9999
....	chr11:125442261-125442553(+)$1	1	46	50	11.9999
((((	chr4:109543623-109543837(+)$1	1	25	29	11.9999
...(	chr2:168726232-168726500(-)$1	1	22	26	11.9999
(((.	chr5:179132588-179132860(+)$1	1	33	37	11.9999
(((.	chr6:26204758-26205026(+)$1	1	23	27	11.9999
))))	chr1:161183859-161184116(+)$1	1	162	166	11.9999
((((	chr11:75114971-75115275(+)$1	1	19	23	11.9999
((((	chrX:118604878-118605109(+)$1	1	111	115	11.9999
(((.	chr14:35786389-35786701(+)$1	1	68	72	11.9999
....	chr1:27059066-27059368(+)$1	1	89	93	11.9999
).))	chr10:126370327-126370636(-)$1	1	242	246	11.9999
...(	chr16:68155907-68156155(+)$1	1	15	19	11.9999
..((	chr2:62099324-62099552(-)$1	1	58	62	11.9999
....	chr3:169866827-169867132(-)$1	1	90	94	11.9999
....	chr1:203830665-203830903(+)$1	1	60	64	11.9999
((((	chr17:41154787-41155038(+)$1	1	83	87	11.9999
))))	chr21:46945664-46945966(-)$1	1	81	85	11.9999
(((.	chr3:47469976-47470241(-)$1	1	25	29	11.9999
))))	chr6:75949929-75950200(-)$1	1	30	34	11.9999
....	chr17:37009178-37009396(-)$1	1	3	7	11.9999
((((	chr12:54677500-54677722(+)$1	1	79	83	11.9999
))))	chr18:43666031-43666296(-)$1	1	227	231	11.9999
....	chrX:48432848-48433064(+)$1	1	18	22	11.9999
((((	chr4:109543595-109543823(+)$1	1	53	57	11.9999
....	chr2:74274875-74275180(+)$1	1	27	31	11.9999
(((.	chr11:10874989-10875259(-)$1	1	44	48	11.9999
))))	chr18:29691628-29691927(+)$1	1	275	279	11.9999
((((	chr6:74229027-74229265(-)$1	1	11	15	11.9999
((..	chr17:45734137-45734443(+)$1	1	63	67	11.9999
....	chr17:80858430-80858711(+)$1	1	56	60	11.9999
..((	chr11:8707213-8707419(+)$1	1	3	7	11.9999
))))	chr4:39459940-39460162(-)$1	1	164	168	11.9999
....	chr4:39459756-39459992(-)$1	1	7	11	11.9999
((..	chr6:160199915-160200211(-)$1	1	35	39	11.9999
(...	chr3:101404610-101404863(-)$1	1	11	15	11.9999
)...	chr1:247320212-247320506(-)$1	1	74	78	11.9999
((((	chr12:98994911-98995157(+)$1	1	26	30	11.9999

#PSSM
U : 0.94	u : 0.05	
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
U : 0.95	u : 0.04	

#score	1055.9999999999998
#seq	88
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_CDS_m1_run2.nuc.txt

#NT
GAAGGUGGGGG	chr7:100171699-100171999(-)$1	300	129	140	17.1525
GGGGCUGGGGG	chr19:36523007-36523336(+)$1	329	153	164	21.2203
ggggguggggg	chr15:38776579-38776840(+)$1	261	29	40	24.3559
GGGGCUGGUGG	chr22:50018399-50018709(-)$1	310	91	102	17.2372
GGGGGAGGAGG	chr9:139756783-139757022(-)$1	239	173	184	16.8135
GGAGGUGGGGG	chr19:10222217-10222508(+)$1	291	246	257	21.1355
ggagguggggc	chr9:101867329-101867617(+)$1	288	74	85	17.1525
ggggguggggg	chr2:54197737-54198042(-)$1	305	94	105	24.3559
GGGGCUGGGAG	chr19:1468752-1469027(-)$1	275	71	82	17.4067
GUGGGUGGGGU	chr7:1521018-1521262(-)$1	244	35	46	16.5593
GGGGGUUGGGG	chr7:5569289-5569537(-)$1	248	34	45	19.8644
GGGGGCGGGCG	chr16:599471-599734(+)$1	263	103	114	17.1525
ggggcuggggu	chr22:50017035-50017299(-)$1	264	189	200	17.4067
GGGGGAAGGGG	chr22:32021687-32021976(-)$1	289	101	112	16.3898
ugGGGUGUGGG	chr11:126146102-126146394(+)$1	292	106	117	16.5593
ggggguggggg	chr11:2400250-2400496(+)$1	246	200	211	24.3559
ggggcuggggu	chr22:50016886-50017143(-)$1	257	33	44	17.4067
ggggguggggg	chr16:447729-448032(+)$1	303	4	15	24.3559
GCGGCUGGGGG	chr19:49964841-49965122(+)$1	281	246	257	17.2372
CGGGGUGGCGG	chr2:232574798-232575066(+)$1	268	110	121	16.5593
GGAGGAGGGGG	chr14:104165104-104165389(+)$1	285	90	101	17.7457
gagggugaggg	chrX:152939467-152939804(-)$1	337	72	83	16.3898
AGGGGUGGGAG	chr19:41312888-41313167(+)$1	279	36	47	16.4745
GGAGGUGGGUG	chr21:46954288-46954555(-)$1	267	100	111	17.2372
GGUGGUGGAGG	chr7:127670360-127670609(+)$1	249	32	43	16.6440
GCUGGUGGGGG	chr11:637278-637537(+)$1	259	136	147	16.8135
UGGGGUGGGGU	chr19:2425975-2426264(-)$1	289	103	114	16.6440
CGGGGAGGGGG	chr15:23086204-23086501(-)$1	297	137	148	17.3220
GGGGAUGCGGG	chr22:50018199-50018437(-)$1	238	196	207	16.3898
GUGGGUGGGGG	chr19:577689-577966(+)$1	277	118	129	20.3728
ugGGGUGUGGG	chr11:126146194-126146433(+)$1	239	14	25	16.5593
GGGGGCGUGGG	chr12:123464926-123465211(+)$1	285	76	87	17.1525
GGUGGUGGUGG	chr16:4431716-4431974(-)$1	258	34	45	16.8135
GGCGGAGGGGG	chrX:41193773-41194025(+)$1	252	30	41	17.1525
GGGGCUGGGAG	chr16:4387421-4387698(-)$1	277	2	13	17.4067
GGGGGCGGGGG	chr8:145016490-145016754(-)$1	264	76	87	21.0508
GGGGGUGAGCG	chr17:7476601-7476862(+)$1	261	246	257	16.4745
GGGGGUGUGGA	chr22:20109990-20110237(+)$1	247	160	171	16.3050
GAGGGUGGUGG	chr11:63883809-63884105(-)$1	296	108	119	16.3898
GGGGCUGGGAG	chr7:1481754-1482004(-)$1	250	185	196	17.4067
gcgaguggggg	chr19:1592441-1592724(-)$1	283	35	46	15.9661
CGGGGCGGGGG	chr3:195622002-195622281(-)$1	279	49	60	17.4067
GGGAGAGGGGG	chr22:50017149-50017464(-)$1	315	19	30	16.5593
GGGGGUGCGGG	chr7:923924-924176(+)$1	252	184	195	20.2881
CGGGGUGGGGC	chr11:1309661-1309955(-)$1	294	120	131	16.7288
GGAGGUUGGGG	chr1:155658041-155658333(-)$1	292	136	147	16.6440
GUGGGCGGGGG	chr5:138629682-138629979(+)$1	297	149	160	17.0677
GGAGCUGGGGG	chr19:2270395-2270671(+)$1	276	119	130	17.9999
GGGCGUGGGUG	chr16:89643723-89644054(+)$1	331	133	144	16.0508
GGGGGCCGGGG	chr19:1468583-1468863(-)$1	280	129	140	16.4745
GGGGGUGAGUG	chr2:97533340-97533631(-)$1	291	113	124	16.4745
gggggcggcgg	chr17:36861787-36862080(+)$1	293	225	236	16.8983
CGGGGUGGGGC	chr19:18547563-18547871(-)$1	308	107	118	16.7288
CGGGGUGGGCG	chr19:863004-863284(+)$1	280	40	51	16.8135
GGGCGUGGUGG	chr11:63884788-63885087(-)$1	299	133	144	15.9661
GGAGUUGGGGG	chr15:80215052-80215396(-)$1	344	69	80	17.2372
GGGGGUGGGGG	chr22:20110054-20110315(+)$1	261	239	250	24.3559
GGUUGUGGGGG	chr9:139235381-139235651(+)$1	270	80	91	16.3050

#otherMatches

#Struct PSSM
Jeeeee[ffff	chr22:50016958-50017210(-)$1	252	100	111	17.4067
FYYFFFFFFGG	chr7:100171699-100171999(-)$1	300	129	140	17.1525
EEBB}CCC:FF	chr19:36523007-36523336(+)$1	329	153	164	21.2203
:::::::::cc	chr15:38776579-38776840(+)$1	261	29	40	24.3559
[dddd[bb[dd	chr22:50018399-50018709(-)$1	310	91	102	17.2372
2ggggggg]cc	chr9:139756783-139757022(-)$1	239	173	184	16.8135
d333ccc22a]	chr19:10222217-10222508(+)$1	291	246	257	21.1355
[dddd[fffff	chr9:101867329-101867617(+)$1	288	74	85	17.1525
"ccc[a[eeee	chr2:54197737-54198042(-)$1	305	94	105	24.3559
e[bba!!dddd	chr19:1468752-1469027(-)$1	275	71	82	17.4067
ffffff22ccc	chr7:1521018-1521262(-)$1	244	35	46	16.5593
JJJJJJJJJJ:	chr7:5569289-5569537(-)$1	248	34	45	19.8644
2eeeeecccgg	chr16:599471-599734(+)$1	263	103	114	17.1525
3dddd22ffff	chr22:50017035-50017299(-)$1	264	189	200	17.4067
eeeee!!cccd	chr22:32021687-32021976(-)$1	289	101	112	16.3898
eee[a[ggggg	chr11:126146102-126146394(+)$1	292	106	117	16.5593
3eeeeeggggg	chr11:2400250-2400496(+)$1	246	200	211	24.3559
iii[bb[ffff	chr22:50016886-50017143(-)$1	257	33	44	17.4067
FF{BBGGGGGG	chr16:447729-448032(+)$1	303	4	15	24.3559
ccJJJJJJJJJ	chr19:49964841-49965122(+)$1	281	246	257	17.2372
{BB{A{CCC{G	chr2:232574798-232575066(+)$1	268	110	121	16.5593
ca22ggggggg	chr14:104165104-104165389(+)$1	285	90	101	17.7457
mmmmbb66666	chrX:152939467-152939804(-)$1	337	72	83	16.3898
KHHHHHHHHKK	chr19:41312888-41313167(+)$1	279	36	47	16.4745
dddd]ccc::f	chr21:46954288-46954555(-)$1	267	100	111	17.2372
nnnnngggggg	chr7:127670360-127670609(+)$1	249	32	43	16.6440
=========[b	chr11:637278-637537(+)$1	259	136	147	16.8135
fffff]ccc]b	chr19:2425975-2426264(-)$1	289	103	114	16.6440
}GGGGGGGddd	chr15:23086204-23086501(-)$1	297	137	148	17.3220
JJJJJJJJJJJ	chr22:50018199-50018437(-)$1	238	196	207	16.3898
eeeeeDDDDGG	chr19:577689-577966(+)$1	277	118	129	20.3728
eee[a[ggggg	chr11:126146194-126146433(+)$1	239	14	25	16.5593
CYYCCCccc!!	chr12:123464926-123465211(+)$1	285	76	87	17.1525
KKGGGGGGG{C	chr16:4431716-4431974(-)$1	258	34	45	16.8135
LLDDDD{DDDD	chrX:41193773-41194025(+)$1	252	30	41	17.1525
DDffffffmmm	chr16:4387421-4387698(-)$1	277	2	13	17.4067
ccbbiiiiiii	chr8:145016490-145016754(-)$1	264	76	87	21.0508
FFFF}IIIIII	chr17:7476601-7476862(+)$1	261	246	257	16.4745
mmmmeeeeeee	chr22:20109990-20110237(+)$1	247	160	171	16.3050
$$$$$eeeeem	chr11:63883809-63884105(-)$1	296	108	119	16.3898
a[ggggggg[b	chr7:1481754-1482004(-)$1	250	185	196	17.4067
B{DDDD{GGGG	chr19:1592441-1592724(-)$1	283	35	46	15.9661
]eeeee]ccc]	chr3:195622002-195622281(-)$1	279	49	60	17.4067
BBBNNNNNGGG	chr22:50017149-50017464(-)$1	315	19	30	16.5593
ccFFFFFF{CC	chr7:923924-924176(+)$1	252	184	195	20.2881
nbb]ccc]ccc	chr11:1309661-1309955(-)$1	294	120	131	16.7288
eeee[======	chr1:155658041-155658333(-)$1	292	136	147	16.6440
cccffffff""	chr5:138629682-138629979(+)$1	297	149	160	17.0677
f!!a[a[ffff	chr19:2270395-2270671(+)$1	276	119	130	17.9999
c22ffffff33	chr16:89643723-89644054(+)$1	331	133	144	16.0508
hhhhh333bb]	chr19:1468583-1468863(-)$1	280	129	140	16.4745
JJJJJ:::eee	chr2:97533340-97533631(-)$1	291	113	124	16.4745
GGGG}CCC}CC	chr17:36861787-36862080(+)$1	293	225	236	16.8983
gggg!!a[iii	chr19:18547563-18547871(-)$1	308	107	118	16.7288
ggggg[eeeee	chr19:863004-863284(+)$1	280	40	51	16.8135
JJJJJJJJ:::	chr11:63884788-63885087(-)$1	299	133	144	15.9661
[ccc!!ggggg	chr15:80215052-80215396(-)$1	344	69	80	17.2372
YYDDDDFFFFF	chr22:20110054-20110315(+)$1	261	239	250	24.3559
a[=========	chr9:139235381-139235651(+)$1	270	80	91	16.3050

#DB
((((((.((((	chr22:50016958-50017210(-)$1	1	100	111	17.4067
)..))))))))	chr7:100171699-100171999(-)$1	1	129	140	17.1525
)))).))).((	chr19:36523007-36523336(+)$1	1	153	164	21.2203
.........((	chr15:38776579-38776840(+)$1	1	29	40	24.3559
.((((.((.((	chr22:50018399-50018709(-)$1	1	91	102	17.2372
.))))))).))	chr9:139756783-139757022(-)$1	1	173	184	16.8135
)...)))..).	chr19:10222217-10222508(+)$1	1	246	257	21.1355
.((((.(((((	chr9:101867329-101867617(+)$1	1	74	85	17.1525
.(((.(.((((	chr2:54197737-54198042(-)$1	1	94	105	24.3559
(.(((..((((	chr19:1468752-1469027(-)$1	1	71	82	17.4067
))))))..)))	chr7:1521018-1521262(-)$1	1	35	46	16.5593
((((((((((.	chr7:5569289-5569537(-)$1	1	34	45	19.8644
.))))))))))	chr16:599471-599734(+)$1	1	103	114	17.1525
.))))..))))	chr22:50017035-50017299(-)$1	1	189	200	17.4067
(((((..((((	chr22:32021687-32021976(-)$1	1	101	112	16.3898
(((.(.(((((	chr11:126146102-126146394(+)$1	1	106	117	16.5593
.))))))))))	chr11:2400250-2400496(+)$1	1	200	211	24.3559
(((.((.((((	chr22:50016886-50017143(-)$1	1	33	44	17.4067
((.((((((((	chr16:447729-448032(+)$1	1	4	15	24.3559
)))))))))))	chr19:49964841-49965122(+)$1	1	246	257	17.2372
.((.(.(((.(	chr2:232574798-232575066(+)$1	1	110	121	16.5593
))..)))))))	chr14:104165104-104165389(+)$1	1	90	101	17.7457
....)).....	chrX:152939467-152939804(-)$1	1	72	83	16.3898
.((((((((..	chr19:41312888-41313167(+)$1	1	36	47	16.4745
)))).)))..(	chr21:46954288-46954555(-)$1	1	100	111	17.2372
.....))))))	chr7:127670360-127670609(+)$1	1	32	43	16.6440
(((((((((.(	chr11:637278-637537(+)$1	1	136	147	16.8135
))))).))).)	chr19:2425975-2426264(-)$1	1	103	114	16.6440
.)))))))(((	chr15:23086204-23086501(-)$1	1	137	148	17.3220
)))))))))))	chr22:50018199-50018437(-)$1	1	196	207	16.3898
)))))))))))	chr19:577689-577966(+)$1	1	118	129	20.3728
(((.(.(((((	chr11:126146194-126146433(+)$1	1	14	25	16.5593
)..)))(((..	chr12:123464926-123465211(+)$1	1	76	87	17.1525
..(((((((.(	chr16:4431716-4431974(-)$1	1	34	45	16.8135
..((((.((((	chrX:41193773-41194025(+)$1	1	30	41	17.1525
((((((((...	chr16:4387421-4387698(-)$1	1	2	13	17.4067
)))))))))))	chr8:145016490-145016754(-)$1	1	76	87	21.0508
)))).))))))	chr17:7476601-7476862(+)$1	1	246	257	16.4745
....)))))((	chr22:20109990-20110237(+)$1	1	160	171	16.3050
.....(((((.	chr11:63883809-63884105(-)$1	1	108	119	16.3898
(.(((((((.(	chr7:1481754-1482004(-)$1	1	185	196	17.4067
(.((((.((((	chr19:1592441-1592724(-)$1	1	35	46	15.9661
.))))).))).	chr3:195622002-195622281(-)$1	1	49	60	17.4067
(((.....(((	chr22:50017149-50017464(-)$1	1	19	30	16.5593
))((((((.((	chr7:923924-924176(+)$1	1	184	195	20.2881
.)).))).)))	chr11:1309661-1309955(-)$1	1	120	131	16.7288
((((.((((((	chr1:155658041-155658333(-)$1	1	136	147	16.6440
(((((((((..	chr5:138629682-138629979(+)$1	1	149	160	17.0677
(..(.(.((((	chr19:2270395-2270671(+)$1	1	119	130	17.9999
)..))))))..	chr16:89643723-89644054(+)$1	1	133	144	16.0508
)))))...)).	chr19:1468583-1468863(-)$1	1	129	140	16.4745
(((((...(((	chr2:97533340-97533631(-)$1	1	113	124	16.4745
)))).))).))	chr17:36861787-36862080(+)$1	1	225	236	16.8983
((((..(.(((	chr19:18547563-18547871(-)$1	1	107	118	16.7288
(((((.(((((	chr19:863004-863284(+)$1	1	40	51	16.8135
((((((((...	chr11:63884788-63885087(-)$1	1	133	144	15.9661
.(((..(((((	chr15:80215052-80215396(-)$1	1	69	80	17.2372
..)))))))))	chr22:20110054-20110315(+)$1	1	239	250	24.3559
(.(((((((((	chr9:139235381-139235651(+)$1	1	80	91	16.3050

#PSSM
G : 0.64	g : 0.18	C : 0.10	u : 0.03	A : 0.01	U : 0.01	
G : 0.66	g : 0.18	U : 0.05	A : 0.03	C : 0.03	a : 0.01	c : 0.01	
G : 0.61	g : 0.16	A : 0.11	U : 0.06	a : 0.01	C : 0.01	
G : 0.74	g : 0.16	C : 0.03	a : 0.01	A : 0.01	U : 0.01	
G : 0.66	g : 0.13	C : 0.11	c : 0.05	A : 0.01	U : 0.01	
U : 0.61	u : 0.16	A : 0.10	C : 0.10	c : 0.01	
G : 0.74	g : 0.18	U : 0.03	A : 0.01	C : 0.01	
G : 0.67	g : 0.16	U : 0.06	C : 0.03	A : 0.03	a : 0.01	
G : 0.69	g : 0.16	U : 0.06	A : 0.03	C : 0.01	c : 0.01	
G : 0.64	g : 0.18	A : 0.06	C : 0.05	U : 0.05	
G : 0.72	g : 0.11	u : 0.05	U : 0.03	C : 0.03	c : 0.01	A : 0.01	

#score	1054.796610169491
#seq	59
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_transcript_m2_run2.nuc.txt

#NT
UGAGUGUGAGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUUGGAGCGUGUUAGGCGAGUGC	chr1:109642810-109643014(+)$1	204	82	143	100.3529
UGAGUGUGAGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUUGGAGCGUGUUAGGCGAGUGC	chr1:109642773-109642980(+)$1	207	119	180	100.3529
UGAGUGUGAGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUUGGAGCGUGUUAGGCGAGUGC	chr1:109642780-109642984(+)$1	204	112	173	100.3529
uguguguguuuguguguguguguauaugCUUGUCAGUGCAUGCACGUGUAUGUCUGGGAGU	chr7:98479329-98479539(+)$1	210	35	96	80.0588
UGAGUGUGAGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUUGGAGCGUGUUAGGCGAGUGC	chr1:109642859-109643079(+)$1	220	33	94	100.3529
uguguguguguguguguguguguguguguguguguguguaugcaugugugugagucagugu	chr22:19410839-19411130(-)$1	291	86	147	96.5294
UGAGUGUGAGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUUGGAGCGUGUUAGGCGAGUGC	chr1:109642795-109643000(+)$1	205	97	158	100.3529
GguguguguguguguguguguguguguguguguguguACGCACAUGUGUUUAUAAAGAUAA	chr11:93454791-93455004(+)$1	213	39	100	76.8235
uguguguguguguguguguguguguguguguguguguguguguguguguguguguguAAAA	chr11:65211611-65211954(+)$1	343	125	186	87.9999
UGUAUUugugugcccguguguguguguguguguguguguguguguguguguguaugAGAGA	chr9:139099082-139099360(-)$1	278	97	158	80.9411
uguguguguuuguguguguguguauaugCUUGUCAGUGCAUGCACGUGUAUGUCUGGGAGU	chr7:98479273-98479505(+)$1	232	91	152	80.0588
uguguguguuuguguguguguguauaugCUUGUCAGUGCAUGCACGUGUAUGUCUGGGAGU	chr7:98479305-98479518(+)$1	213	59	120	80.0588
UCuguguguguguguguguguguguguguguguauguUCAUGUACACUUGGCUGUCAGGCU	chr1:161183942-161184236(+)$1	294	115	176	71.8235
GguguguguguguguguguguguguguguguguguguACGCACAUGUGUUUAUAAAGAUAA	chr11:93454720-93454991(+)$1	271	110	171	76.8235
UUUGAgugugugugugcauguguguguguguguguguguguguguguguguaugugAGAGA	chr7:92243879-92244160(-)$1	281	99	160	85.0588
UGAGUGUGAGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUUGGAGCGUGUUAGGCGAGUGC	chr1:109642837-109643041(+)$1	204	55	116	100.3529

#otherMatches

#Struct PSSM
D============!!dddd[bb[a[ccc[=============uuuuuuuuuuuu=======	chr1:109642879-109643097(+)$1	218	13	74	100.3529
++++++++++bb[ddddmmmmdddd]bb22===========333ccceeeeeccc22eeee	chr1:109642810-109643014(+)$1	204	82	143	100.3529
:::ddddoooooodddd::::::::ccc[=============uuuuuuuuuuuu=======	chr1:109642773-109642980(+)$1	207	119	180	100.3529
:::ddddoooooodddd::::::::ccc[=============uuuuuuuuuuuu=======	chr1:109642780-109642984(+)$1	204	112	173	100.3529
=======!!ccc"""eeeeemmmmeeeee4444ccc]============]a]a]dddd:dd	chr7:98479329-98479539(+)$1	210	35	96	80.0588
D============!!dddd[bb[a[ccc[=============uuuuuuuuuuuu=======	chr1:109642859-109643079(+)$1	220	33	94	100.3529
''''''bb+++++++++++ggggggguuuuuuuuuuuuggggggg0000000000bb7777	chr22:19410839-19411130(-)$1	291	86	147	96.5294
:::ddddoooooodddd::::::::ccc[=============uuuuuuuuuuuu=======	chr1:109642795-109643000(+)$1	205	97	158	100.3529
nffffff]a333ccc7777777ccchhhhhhhhmmmmhhhhhhhh::::JJJJJJJJJJKK	chr11:93454791-93455004(+)$1	213	39	100	76.8235
000000000ccc]a]a]ffffff:::::::::::::::::::::::::::::::::::::F	chr11:65211611-65211954(+)$1	343	125	186	87.9999
eeee333dddd]dddd333ccc]ffffff]ccc::::ccc[a$$$$$dddd[eeeee!!a!	chr9:139099082-139099360(-)$1	278	97	158	80.9411
=======!!ccc"""eeeeemmmmeeeee4444ccc]============::::dddd!!dd	chr7:98479273-98479505(+)$1	232	91	152	80.0588
=======!!ccc"""eeeeemmmmeeeee4444ccc]============]a]a]dddd:dd	chr7:98479305-98479518(+)$1	213	59	120	80.0588
E::::::::::::::::::::::::::::::::::bb[hhhhhhhh"""ddddmmmmdddd	chr1:161183942-161184236(+)$1	294	115	176	71.8235
nffffff]a333ccc7777777ccchhhhhhhhmmmmhhhhhhhh:EEEEE~~~~CCC???	chr11:93454720-93454991(+)$1	271	110	171	76.8235
%%%%%ddddoooooodddd666666ccc333bb22a]bb]bb]ccc22dddd333hhhhhh	chr7:92243879-92244160(-)$1	281	99	160	85.0588
:::ddddoooooodddd::::::::ccc[=============uuuuuuuuuuuu=======	chr1:109642837-109643041(+)$1	204	55	116	100.3529

#DB
(((((((((((((..((((.((.(.(((.(((((((((((((............)))))))	chr1:109642879-109643097(+)$1	1	13	74	100.3529
..........((.((((....)))).))..)))))))))))...)))))))))))..))))	chr1:109642810-109643014(+)$1	1	82	143	100.3529
...((((......))))........(((.(((((((((((((............)))))))	chr1:109642773-109642980(+)$1	1	119	180	100.3529
...((((......))))........(((.(((((((((((((............)))))))	chr1:109642780-109642984(+)$1	1	112	173	100.3529
(((((((..(((...(((((....)))))....))).)))))))))))).).).)))).((	chr7:98479329-98479539(+)$1	1	35	96	80.0588
(((((((((((((..((((.((.(.(((.(((((((((((((............)))))))	chr1:109642859-109643079(+)$1	1	33	94	100.3529
......((...........(((((((............)))))))..........))....	chr22:19410839-19411130(-)$1	1	86	147	96.5294
...((((......))))........(((.(((((((((((((............)))))))	chr1:109642795-109643000(+)$1	1	97	158	100.3529
.)))))).)...))).......)))((((((((....))))))))....((((((((((..	chr11:93454791-93455004(+)$1	1	39	100	76.8235
.........))).).).)))))).....................................(	chr11:65211611-65211954(+)$1	1	125	186	87.9999
))))...)))).))))...))).)))))).)))....(((.(.....((((.(((((..(.	chr9:139099082-139099360(-)$1	1	97	158	80.9411
(((((((..(((...(((((....)))))....))).))))))))))))....((((..((	chr7:98479273-98479505(+)$1	1	91	152	80.0588
(((((((..(((...(((((....)))))....))).)))))))))))).).).)))).((	chr7:98479305-98479518(+)$1	1	59	120	80.0588
(..................................((.((((((((...((((....))))	chr1:161183942-161184236(+)$1	1	115	176	71.8235
.)))))).)...))).......)))((((((((....)))))))).)))))....)))...	chr11:93454720-93454991(+)$1	1	110	171	76.8235
.....((((......))))......)))...))..).)).)).)))..))))...))))))	chr7:92243879-92244160(-)$1	1	99	160	85.0588
...((((......))))........(((.(((((((((((((............)))))))	chr1:109642837-109643041(+)$1	1	55	116	100.3529

#PSSM
U : 0.58	u : 0.29	G : 0.11	
G : 0.47	g : 0.41	C : 0.05	U : 0.05	
u : 0.47	A : 0.41	U : 0.11	
G : 0.47	g : 0.47	A : 0.05	
U : 0.47	u : 0.47	A : 0.05	
g : 0.52	G : 0.41	U : 0.05	
u : 0.58	U : 0.41	
g : 0.58	G : 0.41	
u : 0.58	A : 0.41	
G : 0.41	g : 0.41	u : 0.17	
u : 0.58	U : 0.41	
g : 0.58	G : 0.41	
u : 0.52	G : 0.41	c : 0.05	
g : 0.52	A : 0.41	c : 0.05	
u : 0.52	C : 0.41	c : 0.05	
g : 0.58	G : 0.41	
u : 0.52	C : 0.41	c : 0.05	
g : 0.52	G : 0.41	a : 0.05	
u : 0.58	U : 0.41	
g : 0.58	G : 0.41	
u : 0.58	A : 0.41	
g : 0.58	G : 0.41	
u : 0.58	U : 0.41	
G : 0.41	g : 0.41	a : 0.17	
u : 0.58	U : 0.41	
G : 0.41	g : 0.41	a : 0.17	
u : 0.58	U : 0.41	
g : 0.58	G : 0.41	
A : 0.41	u : 0.41	C : 0.17	
G : 0.41	g : 0.41	U : 0.17	
U : 0.58	u : 0.41	
G : 0.58	g : 0.41	
U : 0.58	u : 0.41	
G : 0.41	g : 0.35	C : 0.17	a : 0.05	
C : 0.41	u : 0.41	A : 0.17	
G : 0.58	g : 0.41	
C : 0.41	u : 0.41	U : 0.17	
G : 0.58	g : 0.23	A : 0.11	U : 0.05	
C : 0.76	u : 0.23	
U : 0.41	A : 0.23	g : 0.17	G : 0.11	a : 0.05	
U : 0.64	u : 0.23	C : 0.11	
G : 0.64	g : 0.23	A : 0.11	
G : 0.41	C : 0.29	u : 0.17	c : 0.05	U : 0.05	
A : 0.76	g : 0.17	a : 0.05	
G : 0.41	C : 0.23	u : 0.23	U : 0.11	
C : 0.41	G : 0.29	g : 0.23	A : 0.05	
G : 0.41	U : 0.29	u : 0.23	C : 0.05	
U : 0.47	G : 0.29	g : 0.23	
G : 0.41	U : 0.35	u : 0.23	
U : 0.52	g : 0.23	A : 0.17	G : 0.05	
U : 0.70	u : 0.23	G : 0.05	
A : 0.52	G : 0.17	g : 0.17	C : 0.05	a : 0.05	
G : 0.41	U : 0.35	u : 0.17	a : 0.05	
G : 0.47	C : 0.17	g : 0.17	A : 0.11	a : 0.05	
C : 0.41	U : 0.23	u : 0.23	A : 0.11	
G : 0.58	g : 0.17	A : 0.11	c : 0.05	C : 0.05	
A : 0.58	G : 0.29	a : 0.05	u : 0.05	
G : 0.76	A : 0.17	g : 0.05	
U : 0.52	A : 0.35	u : 0.05	G : 0.05	
G : 0.70	A : 0.17	g : 0.05	C : 0.05	
C : 0.41	A : 0.29	U : 0.23	u : 0.05	

#score	1518.6470588235256
#seq	17
#width	61
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_CDS_m1_run2.nuc.txt

#NT
GAGGCGGGGCUGGGG	chr15:75651367-75651678(-)$1	311	101	116	24.8913
GGGGCGGGGAAGGCG	chr9:139905566-139905811(-)$1	245	188	203	21.6304
gagcugggggugggg	chr1:33820683-33821036(+)$1	353	13	28	21.4130
gggccgggcgggggg	chr10:21823408-21823713(+)$1	305	62	77	21.7391
GGGCCUGGGGUGGGG	chr16:89758116-89758368(+)$1	252	192	207	25.9782
GGGGCGGGGGUGGGG	chr16:4744300-4744566(+)$1	266	112	127	31.5217
GAGGCGGGGCUGGGG	chr17:79827155-79827456(-)$1	301	282	297	24.8913
GUGUCGGGCGUGGGG	chr16:67226734-67227150(+)$1	416	83	98	19.7826
GGGGCGGGGGCGGCC	chr1:44820431-44820689(-)$1	258	20	35	21.6304
GGCCCUGGGGUGGGA	chr11:431634-431926(-)$1	292	104	119	18.4782
UGGGCGGGGGUGGGC	chr17:80041197-80041465(-)$1	268	90	105	24.4565
AGGGCAGGGGAGGGG	chr1:52825790-52826170(-)$1	380	98	113	22.9347
GGGGAGGGCGCGGGG	chr9:138392524-138392902(+)$1	378	194	209	21.8478
AGGCCUGGGGUGGGG	chr22:38211219-38211542(+)$1	323	88	103	22.0652
AGGGCGGGGCGGGGU	chr2:74757072-74757353(+)$1	281	73	88	19.0217
ggggcggcggccggg	chr1:1284343-1284642(-)$1	299	26	41	20.1086
ggggggagggaggga	chr16:725958-726252(+)$1	294	70	85	18.0434
GGGGCAGGGGUAGAG	chr8:145140333-145140595(+)$1	262	72	87	20.7608
GGGGCCGGGCGGGGG	chr6:43596677-43596934(-)$1	257	3	18	23.6956
GGGGUGGGUGUGGGG	chr8:144917434-144917736(-)$1	302	87	102	24.4565
GGAGGAGGGAUGGGG	chr3:52561265-52561552(-)$1	287	87	102	18.6956
gcggcggGGGUGGGC	chr10:101379837-101380153(-)$1	316	26	41	24.2391
ggggccggggagggu	chr2:54197776-54198040(-)$1	264	67	82	23.0434
GGGGCAGGGUGGGGG	chr9:139904631-139904898(-)$1	267	24	39	23.5869
GGCGCUGGGGAGGGA	chr1:36788413-36788700(+)$1	287	86	101	19.1304
GGGGUGUGGGUGGGG	chr9:139565233-139565512(+)$1	279	113	128	24.3478
GCGGCAGGGGUGGGG	chr19:617758-618088(-)$1	330	13	28	25.2173
ggggcgggggcggag	chr17:1552191-1552470(-)$1	279	3	18	24.8913
GGGGUGGGGGUGGGG	chr11:803521-803795(-)$1	274	89	104	28.5869
UGGACAGGGGUGGGA	chr19:7709325-7709602(+)$1	277	20	35	18.5869
UGGGUUGGGAUGGGG	chr5:1330397-1330674(-)$1	277	79	94	19.1304
GGGGCAGGAUCGGGG	chr20:3735047-3735375(-)$1	328	151	166	19.4565
GGAGCGGGGGUCGGU	chr19:46173775-46174038(+)$1	263	70	85	19.6739
GGGGUGGGGGUGGAG	chr7:100285132-100285388(-)$1	256	86	101	24.4565
GGGGAGGGGCUCGGG	chr11:292861-293205(+)$1	344	149	164	21.5217
gggucggggcugggg	chr8:145624279-145624530(-)$1	251	26	41	25.4347
ggguggggggugggg	chr17:38191075-38191338(-)$1	263	217	232	24.7826
GGGGCCUGGGUGGGG	chr9:139904835-139905113(-)$1	278	64	79	24.6739
GGGCCCUGGGUGGGG	chr19:42401298-42401566(+)$1	268	187	202	21.5217
ggggcuggggugggg	chr19:55752324-55752588(-)$1	264	49	64	29.1304
GGGGCAGGGCUGGGC	chr3:183882753-183883014(+)$1	261	99	114	23.5869
GGGACGGUGGUGGGG	chr8:145623232-145623496(-)$1	264	104	119	23.2608
GGGGCGGGGUGGGGC	chr19:58990941-58991243(-)$1	302	120	135	22.6086
GGUGAGGGGCUGGGG	chr17:80018507-80018758(-)$1	251	56	71	21.4130
CGGGAGGGGGAGGGG	chr6:33405733-33406003(+)$1	270	84	99	21.7391

#otherMatches

#Struct PSSM
dddd[bb[=======	chr19:1011797-1012022(-)$1	225	143	158	24.8913
dddd[ccc[bbiiii	chr15:75651367-75651678(-)$1	311	101	116	24.8913
EEEEEDDDDYYCCCD	chr9:139905566-139905811(-)$1	245	188	203	21.6304
EELLLA{DDDD{HHH	chr1:33820683-33821036(+)$1	353	13	28	21.4130
[a[bb[ddddnnnnn	chr10:21823408-21823713(+)$1	305	62	77	21.7391
FFF}AYYHHHHHHHH	chr16:89758116-89758368(+)$1	252	192	207	25.9782
:::::a[eeeee!!c	chr16:4744300-4744566(+)$1	266	112	127	31.5217
BZZZGGGGGGG}FFF	chr17:79827155-79827456(-)$1	301	282	297	24.8913
cc[a[ccc[gggggg	chr16:67226734-67227150(+)$1	416	83	98	19.7826
JJJJJJJJJJggggg	chr1:44820431-44820689(-)$1	258	20	35	21.6304
=======hhhhhhhh	chr11:431634-431926(-)$1	292	104	119	18.4782
mmmccc333bb]ccc	chr17:80041197-80041465(-)$1	268	90	105	24.4565
{CCCKKCCCKKIIII	chr1:52825790-52826170(-)$1	380	98	113	22.9347
:bb[ccc[bb[dddd	chr9:138392524-138392902(+)$1	378	194	209	21.8478
ggggggooooooggg	chr22:38211219-38211542(+)$1	323	88	103	22.0652
::HHHHHHHHEEEEE	chr2:74757072-74757353(+)$1	281	73	88	19.0217
{GGGGGGGGGGGGGG	chr1:1284343-1284642(-)$1	299	26	41	20.1086
!!ffffff[eeeee"	chr16:725958-726252(+)$1	294	70	85	18.0434
iiiiiiiii]ccc::	chr8:145140333-145140595(+)$1	262	72	87	20.7608
::hhhhhhhh"""==	chr6:43596677-43596934(-)$1	257	3	18	23.6956
GGGG{DDDD{FFFFF	chr8:144917434-144917736(-)$1	302	87	102	24.4565
ccccc:ccc[a[ccc	chr3:52561265-52561552(-)$1	287	87	102	18.6956
ffffffqqqqqqqqf	chr10:101379837-101380153(-)$1	316	26	41	24.2391
c]dddd]a:::::ff	chr2:54197776-54198040(-)$1	264	67	82	23.0434
EEEEE::gggggggq	chr9:139904631-139904898(-)$1	267	24	39	23.5869
$hhhhhhhh[ccc""	chr1:36788413-36788700(+)$1	287	86	101	19.1304
Eeeeeeeeeee[a[a	chr9:139565233-139565512(+)$1	279	113	128	24.3478
GGG{A{BBHHHHHHH	chr19:617758-618088(-)$1	330	13	28	25.2173
::CCCMMMMFFFFFF	chr17:1552191-1552470(-)$1	279	3	18	24.8913
gggggggCCC{DDDD	chr11:803521-803795(-)$1	274	89	104	28.5869
LCCCKKIIIIIIIII	chr19:7709325-7709602(+)$1	277	20	35	18.5869
eiiiiiiiii[eeee	chr5:1330397-1330674(-)$1	277	79	94	19.1304
]dddd::::gggggg	chr20:3735047-3735375(-)$1	328	151	166	19.4565
dddd]bb22a22fff	chr19:46173775-46174038(+)$1	263	70	85	19.6739
============[cc	chr7:100285132-100285388(-)$1	256	86	101	24.4565
GGGGGG}BBZZZGGG	chr11:292861-293205(+)$1	344	149	164	21.5217
eeeee!!dddd[eee	chr8:145624279-145624530(-)$1	251	26	41	25.4347
i:FFFFFFGGGGGGG	chr17:38191075-38191338(-)$1	263	217	232	24.7826
333dddd]ccc]ddd	chr9:139904835-139905113(-)$1	278	64	79	24.6739
dddd:eeeeeggggg	chr19:42401298-42401566(+)$1	268	187	202	21.5217
g::::::FFFFFFII	chr19:55752324-55752588(-)$1	264	49	64	29.1304
gggggg22bb]eeee	chr3:183882753-183883014(+)$1	261	99	114	23.5869
fff[bb!!ccceeee	chr8:145623232-145623496(-)$1	264	104	119	23.2608
eeeeeiiiiiiiiic	chr19:58990941-58991243(-)$1	302	120	135	22.6086
=[a[dddd[ddddqq	chr17:80018507-80018758(-)$1	251	56	71	21.4130
DDDDYYBBBB{A{FF	chr6:33405733-33406003(+)$1	270	84	99	21.7391

#DB
((((.((.(((((((	chr19:1011797-1012022(-)$1	1	143	158	24.8913
((((.(((.((((((	chr15:75651367-75651678(-)$1	1	101	116	24.8913
)))))))))..))))	chr9:139905566-139905811(-)$1	1	188	203	21.6304
((...(.((((.(((	chr1:33820683-33821036(+)$1	1	13	28	21.4130
.(.((.((((.....	chr10:21823408-21823713(+)$1	1	62	77	21.7391
))).)..))))))))	chr16:89758116-89758368(+)$1	1	192	207	25.9782
.....(.(((((..(	chr16:4744300-4744566(+)$1	1	112	127	31.5217
)...))))))).)))	chr17:79827155-79827456(-)$1	1	282	297	24.8913
((.(.(((.((((((	chr16:67226734-67227150(+)$1	1	83	98	19.7826
(((((((((((((((	chr1:44820431-44820689(-)$1	1	20	35	21.6304
)))))))((((((((	chr11:431634-431926(-)$1	1	104	119	18.4782
...)))...)).)))	chr17:80041197-80041465(-)$1	1	90	105	24.4565
.(((..(((..((((	chr1:52825790-52826170(-)$1	1	98	113	22.9347
.((.(((.((.((((	chr9:138392524-138392902(+)$1	1	194	209	21.8478
((((((......)))	chr22:38211219-38211542(+)$1	1	88	103	22.0652
..(((((((((((((	chr2:74757072-74757353(+)$1	1	73	88	19.0217
.((((((((((((((	chr1:1284343-1284642(-)$1	1	26	41	20.1086
..((((((.(((((.	chr16:725958-726252(+)$1	1	70	85	18.0434
))))))))).)))..	chr8:145140333-145140595(+)$1	1	72	87	20.7608
..((((((((...((	chr6:43596677-43596934(-)$1	1	3	18	23.6956
((((.((((.(((((	chr8:144917434-144917736(-)$1	1	87	102	24.4565
))))).(((.(.(((	chr3:52561265-52561552(-)$1	1	87	102	18.6956
((((((........)	chr10:101379837-101380153(-)$1	1	26	41	24.2391
).)))).).....((	chr2:54197776-54198040(-)$1	1	67	82	23.0434
(((((..(((((((.	chr9:139904631-139904898(-)$1	1	24	39	23.5869
.((((((((.(((..	chr1:36788413-36788700(+)$1	1	86	101	19.1304
(((((((((((.(.(	chr9:139565233-139565512(+)$1	1	113	128	24.3478
(((.(.(((((((((	chr19:617758-618088(-)$1	1	13	28	25.2173
..(((....((((((	chr17:1552191-1552470(-)$1	1	3	18	24.8913
)))))))(((.((((	chr11:803521-803795(-)$1	1	89	104	28.5869
.(((..(((((((((	chr19:7709325-7709602(+)$1	1	20	35	18.5869
((((((((((.((((	chr5:1330397-1330674(-)$1	1	79	94	19.1304
.))))....((((((	chr20:3735047-3735375(-)$1	1	151	166	19.4565
)))).))..)..)))	chr19:46173775-46174038(+)$1	1	70	85	19.6739
((((((((((((.((	chr7:100285132-100285388(-)$1	1	86	101	24.4565
)))))).))...)))	chr11:292861-293205(+)$1	1	149	164	21.5217
(((((..((((.(((	chr8:145624279-145624530(-)$1	1	26	41	25.4347
).)))))))))))))	chr17:38191075-38191338(-)$1	1	217	232	24.7826
...)))).))).)))	chr9:139904835-139905113(-)$1	1	64	79	24.6739
)))).((((((((((	chr19:42401298-42401566(+)$1	1	187	202	21.5217
)......((((((((	chr19:55752324-55752588(-)$1	1	49	64	29.1304
))))))..)).))))	chr3:183882753-183883014(+)$1	1	99	114	23.5869
(((.((..(((((((	chr8:145623232-145623496(-)$1	1	104	119	23.2608
)))))((((((((((	chr19:58990941-58991243(-)$1	1	120	135	22.6086
(.(.((((.((((..	chr17:80018507-80018758(-)$1	1	56	71	21.4130
))))..))((.(.((	chr6:33405733-33406003(+)$1	1	84	99	21.7391

#PSSM
G : 0.63	g : 0.21	U : 0.06	A : 0.06	C : 0.02	
G : 0.69	g : 0.17	A : 0.04	a : 0.02	U : 0.02	c : 0.02	C : 0.02	
G : 0.67	g : 0.21	C : 0.04	A : 0.04	U : 0.02	
G : 0.63	g : 0.13	C : 0.08	c : 0.04	A : 0.04	u : 0.04	U : 0.02	
C : 0.56	c : 0.15	U : 0.10	A : 0.08	g : 0.04	u : 0.02	G : 0.02	
G : 0.43	g : 0.17	A : 0.17	U : 0.10	C : 0.06	c : 0.02	u : 0.02	
G : 0.71	g : 0.19	U : 0.06	a : 0.02	
G : 0.78	g : 0.17	c : 0.02	U : 0.02	
G : 0.69	g : 0.17	U : 0.04	C : 0.04	c : 0.02	A : 0.02	
G : 0.52	g : 0.17	C : 0.15	A : 0.06	U : 0.06	c : 0.02	
U : 0.54	C : 0.08	A : 0.08	u : 0.08	G : 0.08	c : 0.04	a : 0.04	g : 0.02	
G : 0.73	g : 0.17	C : 0.04	c : 0.02	A : 0.02	
G : 0.80	g : 0.19	
G : 0.71	g : 0.17	C : 0.04	A : 0.04	a : 0.02	
G : 0.58	g : 0.15	C : 0.10	A : 0.06	U : 0.04	a : 0.02	u : 0.02	

#score	1046.9565217391291
#seq	46
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_CDS_m3_run1.nuc.txt

#NT
CCCAGCCCC	chr1:33236633-33236873(+)$1	240	63	72	23.3392
CCCACCCCC	chr17:27212857-27213129(-)$1	272	141	150	18.7857
CACAGCCCC	chr6:31603888-31604140(+)$1	252	99	108	19.3214
CCCAGCCCC	chr3:47451498-47451806(+)$1	308	255	264	23.3392
gccagcccc	chr6:35260171-35260442(+)$1	271	116	125	19.5000
UCCAGCCCC	chr1:14107167-14107410(+)$1	243	107	116	19.5892
GCCAGCCCC	chr19:15350642-15350913(-)$1	271	43	52	19.5000
CACAGCCCC	chr16:88791381-88791712(-)$1	331	162	171	19.3214
cccaucccc	chr5:137803380-137803651(+)$1	271	155	164	18.9642
CCCAGCACC	chr16:30078167-30078425(+)$1	258	166	175	19.1428
CCCAGCCCU	chr3:47452260-47452592(+)$1	332	136	145	18.8750
CCCAGCCCC	chr12:122260615-122260938(+)$1	323	99	108	23.3392
CUCAGCCCC	chr1:153923738-153924029(-)$1	291	183	192	19.1428
CCCAGCCCC	chr1:8420442-8420710(-)$1	268	148	157	23.3392
CCCAGCCCC	chr1:8420900-8421142(-)$1	242	100	109	23.3392
CCCAGCUCC	chr17:4848114-4848459(+)$1	345	118	127	18.8750
CCCUGCCCC	chr2:242694542-242694845(+)$1	303	248	257	19.5892
UCCAGCCCC	chr5:31526682-31526955(-)$1	273	113	122	19.5892
CCCUGCCCC	chrX:129147364-129147635(+)$1	271	64	73	19.5892
CCCAUCCCC	chr1:156437929-156438251(-)$1	322	36	45	18.9642
ACCAGCCCC	chr5:133984626-133984915(+)$1	289	115	124	19.5000
GCCAGCCCC	chr16:28846400-28846609(+)$1	209	146	155	19.5000
ACCAGCCCC	chr17:16350897-16351271(+)$1	374	282	291	19.5000
CCCAGCACC	chr8:144351338-144351721(+)$1	383	307	316	19.1428
CACAGCCCC	chr6:30672800-30673082(-)$1	282	103	112	19.3214
CCCAGCCCC	chr3:47451684-47451951(+)$1	267	69	78	23.3392
CCCAGCCCU	chr22:51019873-51020144(-)$1	271	102	111	18.8750
CCCGGCCCC	chr12:49433734-49433995(-)$1	261	144	153	19.2321
cccggcccc	chr1:155160968-155161193(-)$1	225	41	50	19.2321
CCCAGCCCC	chr1:33236673-33236933(+)$1	260	23	32	23.3392
CCCAGCCCC	chr7:100075491-100075825(-)$1	334	305	314	23.3392
CCCAGCACC	chr19:36277586-36277865(+)$1	279	65	74	19.1428
CCCUGCCCC	chr6:30617510-30617809(+)$1	299	94	103	19.5892
cccugcccc	chr17:2298364-2298666(-)$1	302	90	99	19.5892
CGCAGCCCC	chr12:49434813-49435103(-)$1	290	170	179	19.0535
CUCAGCCCC	chr12:49434326-49434557(-)$1	231	140	149	19.1428
CCCAGCCCC	chr1:33236476-33236737(+)$1	261	126	135	23.3392
CCCAGCACC	chr14:55529460-55529818(+)$1	358	108	117	19.1428
CACAGCCCC	chr6:30672554-30672853(-)$1	299	120	129	19.3214
CCCUGCCCC	chr19:54656763-54657072(+)$1	309	114	123	19.5892
UCCAGCCCC	chr16:67576593-67576992(+)$1	399	157	166	19.5892
CCCAGGCCC	chr9:134019822-134020115(+)$1	293	85	94	18.5178
CCCAGCCUC	chr17:8046837-8047142(-)$1	305	170	179	18.6964
CCCAGCCCC	chr5:176916795-176917059(-)$1	264	247	256	23.3392
CCCAGCCCC	chr16:2871158-2871473(+)$1	315	121	130	23.3392
CCCAUCCCC	chr1:150525901-150526196(+)$1	295	234	243	18.9642
CCCAGCCCC	chr19:42410418-42410711(+)$1	293	143	152	23.3392
CCCUGCCCC	chr12:122618185-122618483(+)$1	298	155	164	19.5892
CCCAGCCCC	chr17:40946789-40947216(+)$1	427	161	170	23.3392
cccagcccu	chr2:172016831-172017099(-)$1	268	41	50	18.8750
cccagcCUC	chr17:7416863-7417135(+)$1	272	218	227	18.6964
CCCAGCCCC	chr22:20937043-20937311(+)$1	268	117	126	23.3392
uccagcccc	chrX:129147883-129148139(+)$1	256	37	46	19.5892
ACCAGCCCC	chr22:42300418-42300668(+)$1	250	162	171	19.5000
CCCAGCCCC	chr1:8420942-8421213(-)$1	271	171	180	23.3392

#otherMatches

#Struct PSSM
ffffffacc	chr12:49434533-49434762(-)$1	229	15	24	18.5178
c333eeeee	chr1:33236633-33236873(+)$1	240	63	72	23.3392
BB}JJJJJJ	chr17:27212857-27213129(-)$1	272	141	150	18.7857
:::::::::	chr6:31603888-31604140(+)$1	252	99	108	19.3214
ffffff[bb	chr3:47451498-47451806(+)$1	308	255	264	23.3392
eeeee::::	chr6:35260171-35260442(+)$1	271	116	125	19.5000
::DDDD:::	chr1:14107167-14107410(+)$1	243	107	116	19.5892
bb22dddd2	chr19:15350642-15350913(-)$1	271	43	52	19.5000
cc[ddddcc	chr16:88791381-88791712(-)$1	331	162	171	19.3214
++++++bbf	chr5:137803380-137803651(+)$1	271	155	164	18.9642
ffffff:::	chr16:30078167-30078425(+)$1	258	166	175	19.1428
ddddmmmmd	chr3:47452260-47452592(+)$1	332	136	145	18.8750
###cccttt	chr12:122260615-122260938(+)$1	323	99	108	23.3392
eeeeemmmm	chr1:153923738-153924029(-)$1	291	183	192	19.1428
::ffffffl	chr1:8420442-8420710(-)$1	268	148	157	23.3392
hhhhhhh$$	chr1:8420900-8421142(-)$1	242	100	109	23.3392
HHHHHH:::	chr17:4848114-4848459(+)$1	345	118	127	18.8750
eeeee!!cc	chr2:242694542-242694845(+)$1	303	248	257	19.5892
:::::::::	chr5:31526682-31526955(-)$1	273	113	122	19.5892
2dddd::::	chrX:129147364-129147635(+)$1	271	64	73	19.5892
:EEEEEKKC	chr1:156437929-156438251(-)$1	322	36	45	18.9642
HLLLCCC::	chr5:133984626-133984915(+)$1	289	115	124	19.5000
nnffffff:	chr16:28846400-28846609(+)$1	209	146	155	19.5000
dd22cccgg	chr17:16350897-16351271(+)$1	374	282	291	19.5000
ldddd::::	chr8:144351338-144351721(+)$1	383	307	316	19.1428
EEEEE::::	chr6:30672800-30673082(-)$1	282	103	112	19.3214
Eeeeee[bb	chr3:47451684-47451951(+)$1	267	69	78	23.3392
###ccc[cc	chr22:51019873-51020144(-)$1	271	102	111	18.8750
c"""ddddo	chr12:49433734-49433995(-)$1	261	144	153	19.2321
eeeeebb!!	chr1:155160968-155161193(-)$1	225	41	50	19.2321
eeeee!!ar	chr1:33236673-33236933(+)$1	260	23	32	23.3392
blllbbccc	chr7:100075491-100075825(-)$1	334	305	314	23.3392
GGGGGGG::	chr19:36277586-36277865(+)$1	279	65	74	19.1428
}CCC}EEEE	chr6:30617510-30617809(+)$1	299	94	103	19.5892
^^^^^^^^^	chr17:2298364-2298666(-)$1	302	90	99	19.5892
ff]bb8888	chr12:49434813-49435103(-)$1	290	170	179	19.0535
:ddddoooo	chr12:49434326-49434557(-)$1	231	140	149	19.1428
fff::::::	chr1:33236476-33236737(+)$1	261	126	135	23.3392
ccc[dddd+	chr14:55529460-55529818(+)$1	358	108	117	19.1428
:::::::::	chr6:30672554-30672853(-)$1	299	120	129	19.3214
mmmmdddd:	chr19:54656763-54657072(+)$1	309	114	123	19.5892
:::::::::	chr16:67576593-67576992(+)$1	399	157	166	19.5892
7777ddddd	chr9:134019822-134020115(+)$1	293	85	94	18.5178
nnnnhhhhh	chr17:8046837-8047142(-)$1	305	170	179	18.6964
ffff]iiii	chr5:176916795-176917059(-)$1	264	247	256	23.3392
&&&&bbooo	chr16:2871158-2871473(+)$1	315	121	130	23.3392
+++++++++	chr1:150525901-150526196(+)$1	295	234	243	18.9642
::dddd"""	chr19:42410418-42410711(+)$1	293	143	152	23.3392
e333dddd:	chr12:122618185-122618483(+)$1	298	155	164	19.5892
:::::::::	chr17:40946789-40947216(+)$1	427	161	170	23.3392
::DDDD:::	chr2:172016831-172017099(-)$1	268	41	50	18.8750
b::::::::	chr17:7416863-7417135(+)$1	272	218	227	18.6964
>>>>>>>>>	chr22:20937043-20937311(+)$1	268	117	126	23.3392
KEEEEE:::	chrX:129147883-129148139(+)$1	256	37	46	19.5892
::CCCZZZB	chr22:42300418-42300668(+)$1	250	162	171	19.5000
hhhhhhh$$	chr1:8420942-8421213(-)$1	271	171	180	23.3392

#DB
(((((((((	chr12:49434533-49434762(-)$1	1	15	24	18.5178
)...)))))	chr1:33236633-33236873(+)$1	1	63	72	23.3392
)).))))))	chr17:27212857-27213129(-)$1	1	141	150	18.7857
.........	chr6:31603888-31604140(+)$1	1	99	108	19.3214
((((((.((	chr3:47451498-47451806(+)$1	1	255	264	23.3392
)))))....	chr6:35260171-35260442(+)$1	1	116	125	19.5000
..))))...	chr1:14107167-14107410(+)$1	1	107	116	19.5892
))..)))).	chr19:15350642-15350913(-)$1	1	43	52	19.5000
((.((((((	chr16:88791381-88791712(-)$1	1	162	171	19.3214
......(((	chr5:137803380-137803651(+)$1	1	155	164	18.9642
))))))...	chr16:30078167-30078425(+)$1	1	166	175	19.1428
((((....)	chr3:47452260-47452592(+)$1	1	136	145	18.8750
...(((...	chr12:122260615-122260938(+)$1	1	99	108	23.3392
(((((....	chr1:153923738-153924029(-)$1	1	183	192	19.1428
..((((((.	chr1:8420442-8420710(-)$1	1	148	157	23.3392
(((((((..	chr1:8420900-8421142(-)$1	1	100	109	23.3392
((((((...	chr17:4848114-4848459(+)$1	1	118	127	18.8750
(((((..((	chr2:242694542-242694845(+)$1	1	248	257	19.5892
.........	chr5:31526682-31526955(-)$1	1	113	122	19.5892
.))))....	chrX:129147364-129147635(+)$1	1	64	73	19.5892
.(((((..(	chr1:156437929-156438251(-)$1	1	36	45	18.9642
(...(((..	chr5:133984626-133984915(+)$1	1	115	124	19.5000
..)))))).	chr16:28846400-28846609(+)$1	1	146	155	19.5000
))..)))((	chr17:16350897-16351271(+)$1	1	282	291	19.5000
.))))....	chr8:144351338-144351721(+)$1	1	307	316	19.1428
(((((....	chr6:30672800-30673082(-)$1	1	103	112	19.3214
((((((.((	chr3:47451684-47451951(+)$1	1	69	78	23.3392
...(((.((	chr22:51019873-51020144(-)$1	1	102	111	18.8750
(...((((.	chr12:49433734-49433995(-)$1	1	144	153	19.2321
)))))((..	chr1:155160968-155161193(-)$1	1	41	50	19.2321
(((((..(.	chr1:33236673-33236933(+)$1	1	23	32	23.3392
(...)))))	chr7:100075491-100075825(-)$1	1	305	314	23.3392
(((((((..	chr19:36277586-36277865(+)$1	1	65	74	19.1428
.))).))))	chr6:30617510-30617809(+)$1	1	94	103	19.5892
.........	chr17:2298364-2298666(-)$1	1	90	99	19.5892
)).))....	chr12:49434813-49435103(-)$1	1	170	179	19.0535
.((((....	chr12:49434326-49434557(-)$1	1	140	149	19.1428
)))......	chr1:33236476-33236737(+)$1	1	126	135	23.3392
(((.((((.	chr14:55529460-55529818(+)$1	1	108	117	19.1428
.........	chr6:30672554-30672853(-)$1	1	120	129	19.3214
....)))).	chr19:54656763-54657072(+)$1	1	114	123	19.5892
.........	chr16:67576593-67576992(+)$1	1	157	166	19.5892
....)))))	chr9:134019822-134020115(+)$1	1	85	94	18.5178
....)))))	chr17:8046837-8047142(-)$1	1	170	179	18.6964
)))).))))	chr5:176916795-176917059(-)$1	1	247	256	23.3392
....((...	chr16:2871158-2871473(+)$1	1	121	130	23.3392
.........	chr1:150525901-150526196(+)$1	1	234	243	18.9642
..((((...	chr19:42410418-42410711(+)$1	1	143	152	23.3392
)...)))).	chr12:122618185-122618483(+)$1	1	155	164	19.5892
.........	chr17:40946789-40947216(+)$1	1	161	170	23.3392
..((((...	chr2:172016831-172017099(-)$1	1	41	50	18.8750
)........	chr17:7416863-7417135(+)$1	1	218	227	18.6964
.........	chr22:20937043-20937311(+)$1	1	117	126	23.3392
.(((((...	chrX:129147883-129148139(+)$1	1	37	46	19.5892
..)))...)	chr22:42300418-42300668(+)$1	1	162	171	19.5000
(((((((..	chr1:8420942-8421213(-)$1	1	171	180	23.3392

#PSSM
C : 0.73	c : 0.08	U : 0.05	A : 0.05	G : 0.03	g : 0.01	u : 0.01	
C : 0.75	c : 0.12	A : 0.07	U : 0.03	G : 0.01	
C : 0.85	c : 0.12	G : 0.01	
A : 0.76	a : 0.08	U : 0.08	G : 0.01	g : 0.01	u : 0.01	
G : 0.82	g : 0.10	U : 0.03	C : 0.01	u : 0.01	
C : 0.85	c : 0.12	G : 0.01	
C : 0.80	c : 0.10	A : 0.07	U : 0.01	
C : 0.85	c : 0.10	U : 0.03	
C : 0.85	c : 0.08	U : 0.03	u : 0.01	

#score	1138.2500000000011
#seq	56
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_transcript_m3_run1.nuc.txt

#NT
UGGGCGUGGGG	chr19:4035393-4035656(+)$1	263	174	185	16.3695
GGGGGGUGGUU	chr1:149783157-149783422(-)$1	265	231	242	15.6086
GGGAGGUGUGG	chr22:50034059-50034305(-)$1	246	87	98	16.6956
GGGGGCUGAGG	chr16:89040768-89041028(-)$1	260	161	172	19.4130
GGGGGGUGGGG	chr1:1154627-1154885(-)$1	258	92	103	24.6304
GGGGGUUGGGG	chr7:5569445-5569688(-)$1	243	185	196	21.8043
cgggggcgggg	chr19:2270802-2271060(+)$1	258	88	99	17.9999
CGGGGGAGGGG	chr2:232573536-232573772(+)$1	236	89	100	18.2173
GUAGGGUGGGG	chr16:89662982-89663231(+)$1	249	60	71	17.1304
GGAAGGUGGGG	chr7:4768968-4769260(+)$1	292	109	120	17.2391
GGGGGGAGCGG	chr1:109642776-109642981(+)$1	205	18	29	17.7826
CGGGGGAGGGG	chr2:232573572-232573824(+)$1	252	53	64	18.2173
GGGAGCUGGGG	chr19:2270329-2270593(+)$1	264	184	195	19.1956
GGGGGGAGCGG	chr1:109642743-109642948(+)$1	205	51	62	17.7826
GGGAGGUGGUG	chr19:50163963-50164228(-)$1	265	53	64	16.1521
GGUGGCUGUGG	chr19:1410922-1411137(+)$1	215	74	85	15.7173
GGGGGAUGGGG	chr7:1498596-1498823(-)$1	227	87	98	22.1304
ggggggugggg	chr19:3698770-3699023(-)$1	253	76	87	24.6304
GGCGGCUGGGG	chr16:88850941-88851197(-)$1	256	104	115	19.5217
UGggggcgggg	chr9:139560091-139560350(+)$1	259	55	66	17.7826
GGGGGCUGGGG	chr13:92001126-92001366(+)$1	240	53	64	23.2173
CGGGGGUGGGG	chr1:1181513-1181763(-)$1	250	211	222	21.2608
AGGGUGUGGGG	chr2:97535043-97535283(-)$1	240	208	219	16.2608
GGGGGCUGGGG	chr22:20127684-20127945(+)$1	261	124	135	23.2173
ggggggcggcg	chr19:1651895-1652126(-)$1	231	6	17	16.8043
AGGGGAUGGGG	chr21:45562242-45562512(+)$1	270	62	73	18.4347
GGGGGGGGGGG	chr9:139565241-139565500(+)$1	259	238	249	21.1521
GGUGGGAGGGG	chr8:144885120-144885394(-)$1	274	92	103	17.9999
ggaggcugagg	chr10:75364448-75364697(-)$1	249	225	236	16.0434
GGGUGGUGGGG	chr19:2197376-2197632(+)$1	256	105	116	20.2826
GCUGGGUGGGG	chr9:139566817-139567081(+)$1	264	251	262	16.6956
GGGGGGUGGGG	chr3:9519600-9519878(+)$1	278	89	100	24.6304
GAGGGGUGGGG	chr16:89008719-89008965(-)$1	246	36	47	20.2826
GGGGGAUGGGG	chr16:85647231-85647473(+)$1	242	31	42	22.1304
GGGGGGGGGGG	chr19:1434929-1435178(+)$1	249	81	92	21.1521
GGGGGCUGGGG	chr22:50033454-50033730(-)$1	276	83	94	23.2173
GGCGGGUGGGG	chr22:50030303-50030573(-)$1	270	93	104	20.9347
GGGGGCUGGGG	chr7:5569618-5569856(-)$1	238	33	44	23.2173
cggggcucggg	chr17:77812523-77812780(-)$1	257	11	22	15.0652
ggaggcugagg	chr21:46494070-46494373(+)$1	303	21	32	16.0434
GUGGGCAGGGG	chr17:73823401-73823770(-)$1	369	23	34	16.0434
GGGGGCUGGGG	chr7:5569656-5569991(-)$1	335	168	179	23.2173
GGGGGGCGCGG	chr7:5569874-5570164(-)$1	290	140	151	17.5652
UGAGGCUGGGG	chr22:50015524-50015762(-)$1	238	200	211	16.2608
GGGGGAUGGGG	chr19:10406731-10406966(+)$1	235	15	26	22.1304

#otherMatches

#Struct PSSM
ddeeeeeffff	chr22:50016167-50016414(-)$1	247	81	92	15.9347
dddd[ffffff	chr19:4035393-4035656(+)$1	263	174	185	16.3695
hhhhhhhhooo	chr1:149783157-149783422(-)$1	265	231	242	15.6086
ddddhhhhhhh	chr22:50034059-50034305(-)$1	246	87	98	16.6956
===========	chr16:89040768-89041028(-)$1	260	161	172	19.4130
}AFFFFFF:JJ	chr1:1154627-1154885(-)$1	258	92	103	24.6304
]bb]ffffff3	chr7:5569445-5569688(-)$1	243	185	196	21.8043
bmmmmbb:hhh	chr19:2270802-2271060(+)$1	258	88	99	17.9999
c4444eeeeee	chr2:232573536-232573772(+)$1	236	89	100	18.2173
MMMMIIIIIII	chr16:89662982-89663231(+)$1	249	60	71	17.1304
ffffff]a]a3	chr7:4768968-4769260(+)$1	292	109	120	17.2391
gggggpppppp	chr1:109642776-109642981(+)$1	205	18	29	17.7826
c4444eeeeee	chr2:232573572-232573824(+)$1	252	53	64	18.2173
ggggggggggg	chr19:2270329-2270593(+)$1	264	184	195	19.1956
eeeeeeeeeee	chr1:109642743-109642948(+)$1	205	51	62	17.7826
====]bb22ff	chr19:50163963-50164228(-)$1	265	53	64	16.1521
eeee[bbqqqq	chr19:1410922-1411137(+)$1	215	74	85	15.7173
FFCCCKKEEEE	chr7:1498596-1498823(-)$1	227	87	98	22.1304
JJeeeee[ccc	chr19:3698770-3699023(-)$1	253	76	87	24.6304
:::::dddd[g	chr16:88850941-88851197(-)$1	256	104	115	19.5217
na]hhhhhhhh	chr9:139560091-139560350(+)$1	259	55	66	17.7826
======]eeee	chr13:92001126-92001366(+)$1	240	53	64	23.2173
IIIII}Accc[	chr1:1181513-1181763(-)$1	250	211	222	21.2608
:::iiiiiiii	chr2:97535043-97535283(-)$1	240	208	219	16.2608
c[ffffffeee	chr22:20127684-20127945(+)$1	261	124	135	23.2173
BB:ccc[====	chr19:1651895-1652126(-)$1	231	6	17	16.8043
ddd88888888	chr21:45562242-45562512(+)$1	270	62	73	18.4347
}EEEEE?????	chr9:139565241-139565500(+)$1	259	238	249	21.1521
GGGGGGKKEEE	chr8:144885120-144885394(-)$1	274	92	103	17.9999
dd:EEEEE}BB	chr10:75364448-75364697(-)$1	249	225	236	16.0434
ffffff[dddd	chr19:2197376-2197632(+)$1	256	105	116	20.2826
DDDHHHHHHHH	chr9:139566817-139567081(+)$1	264	251	262	16.6956
d[ffffff%%%	chr3:9519600-9519878(+)$1	278	89	100	24.6304
EEE{CCC{EEE	chr16:89008719-89008965(-)$1	246	36	47	20.2826
!!a%%%%%%bb	chr16:85647231-85647473(+)$1	242	31	42	22.1304
FFF~~~~CCC}	chr19:1434929-1435178(+)$1	249	81	92	21.1521
FFFFFF}GGGG	chr22:50033454-50033730(-)$1	276	83	94	23.2173
ee!!a[a[ddd	chr22:50030303-50030573(-)$1	270	93	104	20.9347
=======::gg	chr7:5569618-5569856(-)$1	238	33	44	23.2173
a::GGGGGGGK	chr17:77812523-77812780(-)$1	257	11	22	15.0652
cc:EEEEE{FF	chr21:46494070-46494373(+)$1	303	21	32	16.0434
{A:GGGGGGGP	chr17:73823401-73823770(-)$1	369	23	34	16.0434
dd[a[bb[ddd	chr7:5569656-5569991(-)$1	335	168	179	23.2173
dd]dddd]bb]	chr7:5569874-5570164(-)$1	290	140	151	17.5652
e333ffffff]	chr22:50015524-50015762(-)$1	238	200	211	16.2608
mm=========	chr19:10406731-10406966(+)$1	235	15	26	22.1304

#DB
))(((((((((	chr22:50016167-50016414(-)$1	1	81	92	15.9347
((((.((((((	chr19:4035393-4035656(+)$1	1	174	185	16.3695
((((((((...	chr1:149783157-149783422(-)$1	1	231	242	15.6086
(((((((((((	chr22:50034059-50034305(-)$1	1	87	98	16.6956
)))))))))))	chr16:89040768-89041028(-)$1	1	161	172	19.4130
.))))))).((	chr1:1154627-1154885(-)$1	1	92	103	24.6304
.)).)))))).	chr7:5569445-5569688(-)$1	1	185	196	21.8043
(....)).(((	chr19:2270802-2271060(+)$1	1	88	99	17.9999
)....)))))(	chr2:232573536-232573772(+)$1	1	89	100	18.2173
....(((((((	chr16:89662982-89663231(+)$1	1	60	71	17.1304
)))))).).).	chr7:4768968-4769260(+)$1	1	109	120	17.2391
(((((......	chr1:109642776-109642981(+)$1	1	18	29	17.7826
)....)))))(	chr2:232573572-232573824(+)$1	1	53	64	18.2173
(((((((((((	chr19:2270329-2270593(+)$1	1	184	195	19.1956
))))))(((((	chr1:109642743-109642948(+)$1	1	51	62	17.7826
)))).))..))	chr19:50163963-50164228(-)$1	1	53	64	16.1521
((((.((....	chr19:1410922-1411137(+)$1	1	74	85	15.7173
(((((..((((	chr7:1498596-1498823(-)$1	1	87	98	22.1304
(((((((.(((	chr19:3698770-3699023(-)$1	1	76	87	24.6304
.....((((.(	chr16:88850941-88851197(-)$1	1	104	115	19.5217
.).))))))))	chr9:139560091-139560350(+)$1	1	55	66	17.7826
)))))).))))	chr13:92001126-92001366(+)$1	1	53	64	23.2173
))))).)(((.	chr1:1181513-1181763(-)$1	1	211	222	21.2608
...((((((((	chr2:97535043-97535283(-)$1	1	208	219	16.2608
(.(((((((((	chr22:20127684-20127945(+)$1	1	124	135	23.2173
((.(((.((((	chr19:1651895-1652126(-)$1	1	6	17	16.8043
)))........	chr21:45562242-45562512(+)$1	1	62	73	18.4347
.))))).....	chr9:139565241-139565500(+)$1	1	238	249	21.1521
((((((..(((	chr8:144885120-144885394(-)$1	1	92	103	17.9999
)).))))).))	chr10:75364448-75364697(-)$1	1	225	236	16.0434
((((((.((((	chr19:2197376-2197632(+)$1	1	105	116	20.2826
)))))))))))	chr9:139566817-139567081(+)$1	1	251	262	16.6956
(.((((((...	chr3:9519600-9519878(+)$1	1	89	100	24.6304
(((.(((.(((	chr16:89008719-89008965(-)$1	1	36	47	20.2826
..(......((	chr16:85647231-85647473(+)$1	1	31	42	22.1304
)))....))).	chr19:1434929-1435178(+)$1	1	81	92	21.1521
)))))).))))	chr22:50033454-50033730(-)$1	1	83	94	23.2173
((..(.(.(((	chr22:50030303-50030573(-)$1	1	93	104	20.9347
)))))))..((	chr7:5569618-5569856(-)$1	1	33	44	23.2173
)..(((((((.	chr17:77812523-77812780(-)$1	1	11	22	15.0652
)).(((((.((	chr21:46494070-46494373(+)$1	1	21	32	16.0434
.(.(((((((.	chr17:73823401-73823770(-)$1	1	23	34	16.0434
((.(.((.(((	chr7:5569656-5569991(-)$1	1	168	179	23.2173
)).)))).)).	chr7:5569874-5570164(-)$1	1	140	151	17.5652
)...)))))).	chr22:50015524-50015762(-)$1	1	200	211	16.2608
..)))))))))	chr19:10406731-10406966(+)$1	1	15	26	22.1304

#PSSM
G : 0.69	g : 0.08	U : 0.06	C : 0.06	c : 0.04	A : 0.04	
G : 0.76	g : 0.13	U : 0.06	C : 0.02	A : 0.02	
G : 0.67	g : 0.10	A : 0.06	U : 0.06	C : 0.04	a : 0.04	
G : 0.73	g : 0.15	A : 0.08	U : 0.02	
G : 0.80	g : 0.15	C : 0.02	U : 0.02	
G : 0.49	C : 0.23	g : 0.08	A : 0.08	c : 0.06	U : 0.02	
U : 0.65	A : 0.13	u : 0.08	c : 0.06	G : 0.04	C : 0.02	
G : 0.84	g : 0.13	c : 0.02	
G : 0.71	g : 0.10	C : 0.06	U : 0.04	a : 0.04	A : 0.02	
G : 0.80	g : 0.13	U : 0.04	c : 0.02	
G : 0.80	g : 0.15	U : 0.04	

#score	883.2173913043473
#seq	46
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_UTR_m3_run2.nuc.txt

#NT
UUUG	chr20:36694360-36694613(+)$1	253	60	64	12.0000
uuug	chr19:48985178-48985447(+)$1	269	86	90	12.0000
UUUG	chr14:23947089-23947357(+)$1	268	94	98	12.0000
UUUG	chr16:69375322-69375571(+)$1	249	38	42	12.0000
UUUG	chr12:123641313-123641570(-)$1	257	30	34	12.0000
UUUG	chr16:24955040-24955298(-)$1	258	0	4	12.0000
UUUG	chr1:2324520-2324781(+)$1	261	111	115	12.0000
UUUG	chr19:9529698-9529962(-)$1	264	243	247	12.0000
UUUG	chr19:54972859-54973127(+)$1	268	67	71	12.0000
UUUG	chr21:38480586-38480846(+)$1	260	234	238	12.0000
UUUG	chr7:139060129-139060387(+)$1	258	40	44	12.0000
UUUG	chr1:19665988-19666225(-)$1	237	127	131	12.0000
UUUG	chr5:89815165-89815424(-)$1	259	77	81	12.0000
UUUG	chr2:120689890-120690147(+)$1	257	45	49	12.0000
UUUG	chr5:133509300-133509570(-)$1	270	4	8	12.0000
uuug	chr2:202005978-202006251(+)$1	273	96	100	12.0000
uuug	chr18:23663991-23664254(-)$1	263	168	172	12.0000
UUUG	chr16:18887230-18887485(-)$1	255	62	66	12.0000
UUUG	chr6:24173431-24173688(-)$1	257	121	125	12.0000
UUUG	chr1:109944430-109944673(-)$1	243	202	206	12.0000
UUUG	chr2:136261926-136262182(-)$1	256	94	98	12.0000
UUUG	chrX:30725547-30725813(+)$1	266	22	26	12.0000
UUUG	chr5:95226590-95226863(-)$1	273	66	70	12.0000
UUUG	chr3:14712940-14713229(+)$1	289	106	110	12.0000
UUUG	chr2:27532715-27532957(-)$1	242	9	13	12.0000
UUUG	chr6:33234350-33234610(-)$1	260	127	131	12.0000
UUUG	chr2:200320664-200320946(-)$1	282	15	19	12.0000
UUUG	chr3:33437608-33437891(-)$1	283	58	62	12.0000
UUUG	chr8:54905919-54906168(-)$1	249	38	42	12.0000
UUUG	chr17:40986420-40986678(+)$1	258	212	216	12.0000
UUUG	chr17:49052163-49052421(-)$1	258	87	91	12.0000
UUUG	chr14:50251051-50251310(-)$1	259	4	8	12.0000
UUUG	chr5:38886244-38886517(+)$1	273	92	96	12.0000
UUUG	chr3:123671685-123671945(-)$1	260	37	41	12.0000
UUUG	chr3:69105832-69106090(-)$1	258	200	204	12.0000
uuug	chr16:29516832-29517111(-)$1	279	17	21	12.0000
UUUG	chr11:28146954-28147208(+)$1	254	3	7	12.0000
UUUG	chr22:30221639-30221885(-)$1	246	103	107	12.0000
UUUG	chr1:230804976-230805261(+)$1	285	8	12	12.0000
UUUG	chrX:30712411-30712639(+)$1	228	7	11	12.0000
UUUG	chr17:29533127-29533383(+)$1	256	9	13	12.0000
UUUG	chr9:104162096-104162338(+)$1	242	81	85	12.0000
UUUG	chr3:38454314-38454565(+)$1	251	235	239	12.0000
uuug	chr11:43467366-43467621(+)$1	255	11	15	12.0000
UUUG	chr1:155650096-155650358(-)$1	262	95	99	12.0000
UUUG	chr11:78180223-78180475(-)$1	252	190	194	12.0000
UUUG	chr17:36358012-36358266(-)$1	254	16	20	12.0000
UUUG	chr6:146261797-146262055(-)$1	258	138	142	12.0000
UUUG	chr17:74731116-74731351(-)$1	235	19	23	12.0000
UUUG	chr10:103567500-103567768(-)$1	268	57	61	12.0000
UUUG	chr4:107151389-107151719(-)$1	330	96	100	12.0000
UUUG	chr2:30379376-30379637(+)$1	261	89	93	12.0000
UUUG	chr17:15905107-15905375(+)$1	268	103	107	12.0000
UUUG	chr17:4071060-4071323(-)$1	263	105	109	12.0000
UUUG	chr7:99696827-99697088(-)$1	261	44	48	12.0000
UUUG	chr17:16247889-16248138(-)$1	249	75	79	12.0000
UUUG	chr17:48777910-48778195(-)$1	285	108	112	12.0000
UUUG	chr12:49054211-49054530(-)$1	319	70	74	12.0000
UUUG	chr17:66526155-66526393(+)$1	238	65	69	12.0000
UUUG	chr17:40630368-40630630(+)$1	262	152	156	12.0000
UUUG	chr16:8735877-8736117(+)$1	240	30	34	12.0000
UUUG	chr7:99158044-99158326(+)$1	282	34	38	12.0000
UUUG	chr2:208461521-208461783(+)$1	262	81	85	12.0000
UUUG	chr1:220383685-220383945(-)$1	260	42	46	12.0000
UUUG	chr18:23632663-23632940(-)$1	277	5	9	12.0000
UUUG	chr6:154754498-154754771(-)$1	273	136	140	12.0000
UUUG	chr5:134125680-134125958(+)$1	278	181	185	12.0000
UUUG	chr12:124429152-124429417(-)$1	265	11	15	12.0000
UUUG	chr5:126887282-126887546(+)$1	264	2	6	12.0000
UUUG	chr2:209166840-209167090(+)$1	250	7	11	12.0000
UUUG	chr16:70805939-70806189(-)$1	250	204	208	12.0000
UUUG	chr22:31838928-31839191(-)$1	263	21	25	12.0000
UUUG	chr5:167922250-167922510(+)$1	260	55	59	12.0000
UUUG	chr13:50571690-50571956(+)$1	266	20	24	12.0000
UUUG	chr17:38188217-38188471(-)$1	254	139	143	12.0000
uuuG	chr14:45565505-45565770(+)$1	265	11	15	12.0000
uuug	chr2:233733633-233733892(+)$1	259	75	79	12.0000
UUUG	chr2:135703560-135703845(+)$1	285	9	13	12.0000
UUUG	chr17:30696897-30697160(+)$1	263	45	49	12.0000
UUUG	chr8:141679700-141679993(-)$1	293	38	42	12.0000

#otherMatches

#Struct PSSM
++++	chr13:46108727-46108986(+)$1	259	97	101	12.0000
g###	chr20:36694360-36694613(+)$1	253	60	64	12.0000
###e	chr19:48985178-48985447(+)$1	269	86	90	12.0000
:ggg	chr14:23947089-23947357(+)$1	268	94	98	12.0000
fff]	chr16:69375322-69375571(+)$1	249	38	42	12.0000
fffl	chr12:123641313-123641570(-)$1	257	30	34	12.0000
:::c	chr16:24955040-24955298(-)$1	258	0	4	12.0000
ffff	chr1:2324520-2324781(+)$1	261	111	115	12.0000
FFFF	chr19:9529698-9529962(-)$1	264	243	247	12.0000
zzdd	chr19:54972859-54973127(+)$1	268	67	71	12.0000
====	chr21:38480586-38480846(+)$1	260	234	238	12.0000
e::f	chr7:139060129-139060387(+)$1	258	40	44	12.0000
eeez	chr1:19665988-19666225(-)$1	237	127	131	12.0000
++++	chr5:89815165-89815424(-)$1	259	77	81	12.0000
ffff	chr2:120689890-120690147(+)$1	257	45	49	12.0000
IIII	chr5:133509300-133509570(-)$1	270	4	8	12.0000
2hhh	chr2:202005978-202006251(+)$1	273	96	100	12.0000
:::h	chr18:23663991-23664254(-)$1	263	168	172	12.0000
###a	chr16:18887230-18887485(-)$1	255	62	66	12.0000
hhhh	chr6:24173431-24173688(-)$1	257	121	125	12.0000
ffff	chr1:109944430-109944673(-)$1	243	202	206	12.0000
::::	chr2:136261926-136262182(-)$1	256	94	98	12.0000
:GGG	chrX:30725547-30725813(+)$1	266	22	26	12.0000
"""d	chr5:95226590-95226863(-)$1	273	66	70	12.0000
HHHH	chr3:14712940-14713229(+)$1	289	106	110	12.0000
:EEE	chr2:27532715-27532957(-)$1	242	9	13	12.0000
::::	chr6:33234350-33234610(-)$1	260	127	131	12.0000
::::	chr2:200320664-200320946(-)$1	282	15	19	12.0000
:FFF	chr3:33437608-33437891(-)$1	283	58	62	12.0000
::::	chr8:54905919-54906168(-)$1	249	38	42	12.0000
nddd	chr17:40986420-40986678(+)$1	258	212	216	12.0000
333c	chr17:49052163-49052421(-)$1	258	87	91	12.0000
:::h	chr14:50251051-50251310(-)$1	259	4	8	12.0000
dddd	chr5:38886244-38886517(+)$1	273	92	96	12.0000
eeee	chr3:123671685-123671945(-)$1	260	37	41	12.0000
FYYB	chr3:69105832-69106090(-)$1	258	200	204	12.0000
eeee	chr16:29516832-29517111(-)$1	279	17	21	12.0000
GGGG	chr11:28146954-28147208(+)$1	254	3	7	12.0000
444b	chr22:30221639-30221885(-)$1	246	103	107	12.0000
::dd	chr1:230804976-230805261(+)$1	285	8	12	12.0000
KKDD	chrX:30712411-30712639(+)$1	228	7	11	12.0000
HHH{	chr17:29533127-29533383(+)$1	256	9	13	12.0000
iiii	chr9:104162096-104162338(+)$1	242	81	85	12.0000
EEEE	chr3:38454314-38454565(+)$1	251	235	239	12.0000
:EEE	chr11:43467366-43467621(+)$1	255	11	15	12.0000
ffff	chr1:155650096-155650358(-)$1	262	95	99	12.0000
:::f	chr11:78180223-78180475(-)$1	252	190	194	12.0000
EKKD	chr17:36358012-36358266(-)$1	254	16	20	12.0000
a]dd	chr6:146261797-146262055(-)$1	258	138	142	12.0000
elll	chr17:74731116-74731351(-)$1	235	19	23	12.0000
====	chr10:103567500-103567768(-)$1	268	57	61	12.0000
a!!c	chr4:107151389-107151719(-)$1	330	96	100	12.0000
22ee	chr2:30379376-30379637(+)$1	261	89	93	12.0000
!!bb	chr17:15905107-15905375(+)$1	268	103	107	12.0000
====	chr17:4071060-4071323(-)$1	263	105	109	12.0000
:eee	chr7:99696827-99697088(-)$1	261	44	48	12.0000
eeen	chr17:16247889-16248138(-)$1	249	75	79	12.0000
JJJJ	chr17:48777910-48778195(-)$1	285	108	112	12.0000
hhhh	chr12:49054211-49054530(-)$1	319	70	74	12.0000
eeee	chr17:66526155-66526393(+)$1	238	65	69	12.0000
:::h	chr17:40630368-40630630(+)$1	262	152	156	12.0000
EKKD	chr16:8735877-8736117(+)$1	240	30	34	12.0000
ffff	chr7:99158044-99158326(+)$1	282	34	38	12.0000
hhhh	chr2:208461521-208461783(+)$1	262	81	85	12.0000
dd[c	chr1:220383685-220383945(-)$1	260	42	46	12.0000
EEE{	chr18:23632663-23632940(-)$1	277	5	9	12.0000
dmmm	chr6:154754498-154754771(-)$1	273	136	140	12.0000
FFFf	chr5:134125680-134125958(+)$1	278	181	185	12.0000
rrrr	chr12:124429152-124429417(-)$1	265	11	15	12.0000
GGGG	chr5:126887282-126887546(+)$1	264	2	6	12.0000
::::	chr2:209166840-209167090(+)$1	250	7	11	12.0000
lbb]	chr16:70805939-70806189(-)$1	250	204	208	12.0000
FFFF	chr22:31838928-31839191(-)$1	263	21	25	12.0000
^^^^	chr5:167922250-167922510(+)$1	260	55	59	12.0000
FFF{	chr13:50571690-50571956(+)$1	266	20	24	12.0000
eee[	chr17:38188217-38188471(-)$1	254	139	143	12.0000
::II	chr14:45565505-45565770(+)$1	265	11	15	12.0000
====	chr2:233733633-233733892(+)$1	259	75	79	12.0000
gggg	chr2:135703560-135703845(+)$1	285	9	13	12.0000
KKGG	chr17:30696897-30697160(+)$1	263	45	49	12.0000
vvvv	chr8:141679700-141679993(-)$1	293	38	42	12.0000

#DB
....	chr13:46108727-46108986(+)$1	1	97	101	12.0000
(...	chr20:36694360-36694613(+)$1	1	60	64	12.0000
...(	chr19:48985178-48985447(+)$1	1	86	90	12.0000
.(((	chr14:23947089-23947357(+)$1	1	94	98	12.0000
))).	chr16:69375322-69375571(+)$1	1	38	42	12.0000
(((.	chr12:123641313-123641570(-)$1	1	30	34	12.0000
...(	chr16:24955040-24955298(-)$1	1	0	4	12.0000
((((	chr1:2324520-2324781(+)$1	1	111	115	12.0000
))))	chr19:9529698-9529962(-)$1	1	243	247	12.0000
..))	chr19:54972859-54973127(+)$1	1	67	71	12.0000
))))	chr21:38480586-38480846(+)$1	1	234	238	12.0000
)..(	chr7:139060129-139060387(+)$1	1	40	44	12.0000
(((.	chr1:19665988-19666225(-)$1	1	127	131	12.0000
....	chr5:89815165-89815424(-)$1	1	77	81	12.0000
))))	chr2:120689890-120690147(+)$1	1	45	49	12.0000
((((	chr5:133509300-133509570(-)$1	1	4	8	12.0000
.)))	chr2:202005978-202006251(+)$1	1	96	100	12.0000
...(	chr18:23663991-23664254(-)$1	1	168	172	12.0000
...(	chr16:18887230-18887485(-)$1	1	62	66	12.0000
))))	chr6:24173431-24173688(-)$1	1	121	125	12.0000
))))	chr1:109944430-109944673(-)$1	1	202	206	12.0000
....	chr2:136261926-136262182(-)$1	1	94	98	12.0000
.(((	chrX:30725547-30725813(+)$1	1	22	26	12.0000
...(	chr5:95226590-95226863(-)$1	1	66	70	12.0000
((((	chr3:14712940-14713229(+)$1	1	106	110	12.0000
.(((	chr2:27532715-27532957(-)$1	1	9	13	12.0000
....	chr6:33234350-33234610(-)$1	1	127	131	12.0000
....	chr2:200320664-200320946(-)$1	1	15	19	12.0000
.(((	chr3:33437608-33437891(-)$1	1	58	62	12.0000
....	chr8:54905919-54906168(-)$1	1	38	42	12.0000
.)))	chr17:40986420-40986678(+)$1	1	212	216	12.0000
...)	chr17:49052163-49052421(-)$1	1	87	91	12.0000
...(	chr14:50251051-50251310(-)$1	1	4	8	12.0000
((((	chr5:38886244-38886517(+)$1	1	92	96	12.0000
))))	chr3:123671685-123671945(-)$1	1	37	41	12.0000
)..)	chr3:69105832-69106090(-)$1	1	200	204	12.0000
((((	chr16:29516832-29517111(-)$1	1	17	21	12.0000
((((	chr11:28146954-28147208(+)$1	1	3	7	12.0000
...)	chr22:30221639-30221885(-)$1	1	103	107	12.0000
..((	chr1:230804976-230805261(+)$1	1	8	12	12.0000
..((	chrX:30712411-30712639(+)$1	1	7	11	12.0000
(((.	chr17:29533127-29533383(+)$1	1	9	13	12.0000
))))	chr9:104162096-104162338(+)$1	1	81	85	12.0000
))))	chr3:38454314-38454565(+)$1	1	235	239	12.0000
.(((	chr11:43467366-43467621(+)$1	1	11	15	12.0000
((((	chr1:155650096-155650358(-)$1	1	95	99	12.0000
...(	chr11:78180223-78180475(-)$1	1	190	194	12.0000
(..(	chr17:36358012-36358266(-)$1	1	16	20	12.0000
).))	chr6:146261797-146262055(-)$1	1	138	142	12.0000
(...	chr17:74731116-74731351(-)$1	1	19	23	12.0000
))))	chr10:103567500-103567768(-)$1	1	57	61	12.0000
(..(	chr4:107151389-107151719(-)$1	1	96	100	12.0000
..))	chr2:30379376-30379637(+)$1	1	89	93	12.0000
..((	chr17:15905107-15905375(+)$1	1	103	107	12.0000
))))	chr17:4071060-4071323(-)$1	1	105	109	12.0000
.(((	chr7:99696827-99697088(-)$1	1	44	48	12.0000
(((.	chr17:16247889-16248138(-)$1	1	75	79	12.0000
((((	chr17:48777910-48778195(-)$1	1	108	112	12.0000
((((	chr12:49054211-49054530(-)$1	1	70	74	12.0000
))))	chr17:66526155-66526393(+)$1	1	65	69	12.0000
...(	chr17:40630368-40630630(+)$1	1	152	156	12.0000
(..(	chr16:8735877-8736117(+)$1	1	30	34	12.0000
))))	chr7:99158044-99158326(+)$1	1	34	38	12.0000
))))	chr2:208461521-208461783(+)$1	1	81	85	12.0000
((.(	chr1:220383685-220383945(-)$1	1	42	46	12.0000
(((.	chr18:23632663-23632940(-)$1	1	5	9	12.0000
(...	chr6:154754498-154754771(-)$1	1	136	140	12.0000
)))(	chr5:134125680-134125958(+)$1	1	181	185	12.0000
....	chr12:124429152-124429417(-)$1	1	11	15	12.0000
((((	chr5:126887282-126887546(+)$1	1	2	6	12.0000
....	chr2:209166840-209167090(+)$1	1	7	11	12.0000
.)).	chr16:70805939-70806189(-)$1	1	204	208	12.0000
((((	chr22:31838928-31839191(-)$1	1	21	25	12.0000
....	chr5:167922250-167922510(+)$1	1	55	59	12.0000
(((.	chr13:50571690-50571956(+)$1	1	20	24	12.0000
(((.	chr17:38188217-38188471(-)$1	1	139	143	12.0000
..((	chr14:45565505-45565770(+)$1	1	11	15	12.0000
))))	chr2:233733633-233733892(+)$1	1	75	79	12.0000
((((	chr2:135703560-135703845(+)$1	1	9	13	12.0000
..((	chr17:30696897-30697160(+)$1	1	45	49	12.0000
....	chr8:141679700-141679993(-)$1	1	38	42	12.0000

#PSSM
U : 0.91	u : 0.08	
U : 0.91	u : 0.08	
U : 0.91	u : 0.08	
G : 0.92	g : 0.07	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_UTR_m2_run1.nuc.txt

#NT
UUU	chr2:207027112-207027329(+)$1	217	28	31	9.0000
UUU	chr12:9261872-9262095(-)$1	223	76	79	9.0000
UUU	chr19:5598705-5598997(-)$1	292	41	44	9.0000
UUU	chr7:98997873-98998148(-)$1	275	1	4	9.0000
UUU	chr1:150192884-150193167(-)$1	283	24	27	9.0000
UUU	chr3:133495853-133496085(+)$1	232	21	24	9.0000
UUU	chr7:100780744-100780965(+)$1	221	53	56	9.0000
UUU	chr11:129999832-130000047(+)$1	215	5	8	9.0000
UUU	chr14:39648330-39648541(+)$1	211	51	54	9.0000
UUU	chr7:100780765-100780997(+)$1	232	32	35	9.0000
UUU	chr14:21679462-21679726(-)$1	264	241	244	9.0000
UUU	chr16:248974-249339(-)$1	365	27	30	9.0000
uuu	chr13:79894605-79894911(-)$1	306	6	9	9.0000
UUU	chr7:100770345-100770574(+)$1	229	48	51	9.0000
UUU	chr4:39329053-39329354(-)$1	301	108	111	9.0000
UUU	chr14:24606809-24607107(+)$1	298	28	31	9.0000
UUU	chr12:56574671-56574980(-)$1	309	73	76	9.0000
UUU	chrX:23801367-23801631(+)$1	264	217	220	9.0000
UUU	chr16:48303825-48304193(+)$1	368	3	6	9.0000
UUU	chr1:44010601-44010866(+)$1	265	210	213	9.0000
UUU	chr17:16046859-16047112(-)$1	253	39	42	9.0000
UUU	chr5:179149896-179150120(+)$1	224	23	26	9.0000
UUU	chr17:62498455-62498663(-)$1	208	49	52	9.0000
UUU	chr3:50091681-50091923(+)$1	242	3	6	9.0000
UUU	chr14:39648341-39648550(+)$1	209	40	43	9.0000
uuu	chr20:34293067-34293342(-)$1	275	10	13	9.0000
UUU	chr3:79067523-79067804(-)$1	281	100	103	9.0000
UUU	chr11:129996494-129996727(+)$1	233	37	40	9.0000
UUU	chr2:198359931-198360165(-)$1	234	1	4	9.0000
UUU	chr4:39901944-39902228(-)$1	284	52	55	9.0000
UUU	chr12:30881592-30881916(-)$1	324	226	229	9.0000
UUU	chr17:43170954-43171219(+)$1	265	14	17	9.0000
UUU	chr6:13620349-13620623(+)$1	274	65	68	9.0000
UUU	chr14:21162057-21162355(+)$1	298	93	96	9.0000
UUU	chr1:8073675-8073999(-)$1	324	109	112	9.0000
UUU	chr3:133495796-133496031(+)$1	235	18	21	9.0000
UUU	chr11:121437615-121437915(+)$1	300	17	20	9.0000
UUU	chr5:131923635-131923887(+)$1	252	159	162	9.0000
UUU	chr12:46758333-46758581(-)$1	248	39	42	9.0000
UUU	chr3:133494342-133494561(+)$1	219	145	148	9.0000
UUU	chr11:93470268-93470505(-)$1	237	5	8	9.0000
UUU	chr8:17541750-17542040(-)$1	290	117	120	9.0000
UUU	chr6:56365854-56366133(-)$1	279	23	26	9.0000
UUU	chr7:75608783-75608997(+)$1	214	36	39	9.0000
UUU	chr3:160135459-160135767(+)$1	308	3	6	9.0000
UUU	chr2:62934045-62934299(+)$1	254	113	116	9.0000
UUU	chr12:104341397-104341629(+)$1	232	2	5	9.0000
UUU	chr15:93492078-93492409(+)$1	331	1	4	9.0000
UUU	chr2:216230130-216230353(-)$1	223	144	147	9.0000
UUU	chr12:57106479-57106789(-)$1	310	63	66	9.0000
UUU	chr20:34302061-34302311(-)$1	250	0	3	9.0000
UUU	chr19:19135637-19135935(-)$1	298	30	33	9.0000
UUU	chr6:56392299-56392573(-)$1	274	0	3	9.0000
UUU	chr3:50107822-50108085(+)$1	263	3	6	9.0000
UUU	chr11:61732740-61732948(-)$1	208	0	3	9.0000
UUU	chr1:16893568-16893822(-)$1	254	100	103	9.0000
UUU	chr11:118887971-118888192(-)$1	221	146	149	9.0000
UUU	chr4:56283229-56283565(+)$1	336	0	3	9.0000
UUU	chr8:124371716-124371962(-)$1	246	5	8	9.0000
uuu	chr1:1325507-1325745(-)$1	238	232	235	9.0000
UUU	chr14:35062149-35062445(-)$1	296	5	8	9.0000
UUU	chr12:69646790-69647036(+)$1	246	0	3	9.0000
UUU	chr8:40011488-40011770(+)$1	282	79	82	9.0000
UUU	chr17:37360787-37361008(+)$1	221	83	86	9.0000
UUU	chr12:46764996-46765252(-)$1	256	82	85	9.0000
UUU	chr11:129990503-129990757(+)$1	254	43	46	9.0000
UUU	chr8:17504458-17504691(-)$1	233	55	58	9.0000
UUU	chr2:216983754-216983988(+)$1	234	5	8	9.0000
UUU	chr7:134625783-134626053(+)$1	270	17	20	9.0000
UUU	chr16:22308640-22308901(+)$1	261	104	107	9.0000
UUU	chr12:56495502-56495799(+)$1	297	189	192	9.0000
UUU	chr6:56376057-56376298(-)$1	241	2	5	9.0000
UUU	chr3:50012668-50012910(+)$1	242	41	44	9.0000
UUU	chr5:179153580-179153859(+)$1	279	70	73	9.0000
UUU	chr1:113471756-113472069(-)$1	313	23	26	9.0000
UUU	chr17:62500106-62500326(-)$1	220	20	23	9.0000
UUU	chr17:16042307-16042564(-)$1	257	18	21	9.0000
UUU	chr13:107220077-107220382(-)$1	305	4	7	9.0000
UUU	chr11:102269453-102269723(-)$1	270	23	26	9.0000
UUU	chr15:44062620-44062879(+)$1	259	87	90	9.0000
UUU	chr4:184180756-184180982(+)$1	226	8	11	9.0000
UUU	chr7:5754583-5754868(-)$1	285	18	21	9.0000
UUU	chr20:30729197-30729437(+)$1	240	11	14	9.0000
UUU	chr6:56362552-56362834(-)$1	282	104	107	9.0000
UUU	chr7:22354888-22355193(-)$1	305	71	74	9.0000
UUU	chr3:156870760-156870999(-)$1	239	5	8	9.0000
UUU	chr20:29623033-29623305(+)$1	272	18	21	9.0000
UUU	chr3:121412678-121412951(-)$1	273	37	40	9.0000
UUU	chr16:89348943-89349166(-)$1	223	188	191	9.0000
UUU	chr17:62500021-62500306(-)$1	285	0	3	9.0000
UUU	chr8:56986162-56986427(-)$1	265	9	12	9.0000
UUU	chr5:174935976-174936294(+)$1	318	17	20	9.0000
UUU	chr10:79793524-79793757(+)$1	233	99	102	9.0000
UUU	chr11:61732480-61732684(-)$1	204	14	17	9.0000
UUU	chr11:77335925-77336218(-)$1	293	0	3	9.0000
UUU	chr1:28564263-28564577(+)$1	314	24	27	9.0000
UUU	chr15:81271359-81271662(-)$1	303	152	155	9.0000
UUU	chr2:217366030-217366264(+)$1	234	22	25	9.0000
UUU	chr8:141745248-141745610(-)$1	362	36	39	9.0000

#otherMatches

#Struct PSSM
:::	chr11:14515721-14516018(-)$1	297	6	9	9.0000
iii	chr2:207027112-207027329(+)$1	217	28	31	9.0000
^^^	chr12:9261872-9262095(-)$1	223	76	79	9.0000
JJJ	chr19:5598705-5598997(-)$1	292	41	44	9.0000
CCC	chr7:98997873-98998148(-)$1	275	1	4	9.0000
cco	chr1:150192884-150193167(-)$1	283	24	27	9.0000
ggg	chr3:133495853-133496085(+)$1	232	21	24	9.0000
:::	chr7:100780744-100780965(+)$1	221	53	56	9.0000
ff#	chr11:129999832-130000047(+)$1	215	5	8	9.0000
ggg	chr14:39648330-39648541(+)$1	211	51	54	9.0000
:::	chr7:100780765-100780997(+)$1	232	32	35	9.0000
}DD	chr14:21679462-21679726(-)$1	264	241	244	9.0000
FNN	chr16:248974-249339(-)$1	365	27	30	9.0000
:::	chr13:79894605-79894911(-)$1	306	6	9	9.0000
###	chr7:100770345-100770574(+)$1	229	48	51	9.0000
fff	chr4:39329053-39329354(-)$1	301	108	111	9.0000
GGE	chr14:24606809-24607107(+)$1	298	28	31	9.0000
^^^	chr12:56574671-56574980(-)$1	309	73	76	9.0000
HHH	chrX:23801367-23801631(+)$1	264	217	220	9.0000
:::	chr16:48303825-48304193(+)$1	368	3	6	9.0000
tee	chr1:44010601-44010866(+)$1	265	210	213	9.0000
IKK	chr17:16046859-16047112(-)$1	253	39	42	9.0000
FLL	chr5:179149896-179150120(+)$1	224	23	26	9.0000
GKK	chr17:62498455-62498663(-)$1	208	49	52	9.0000
::G	chr3:50091681-50091923(+)$1	242	3	6	9.0000
fff	chr14:39648341-39648550(+)$1	209	40	43	9.0000
ooo	chr20:34293067-34293342(-)$1	275	10	13	9.0000
33d	chr3:79067523-79067804(-)$1	281	100	103	9.0000
===	chr11:129996494-129996727(+)$1	233	37	40	9.0000
:::	chr2:198359931-198360165(-)$1	234	1	4	9.0000
:::	chr4:39901944-39902228(-)$1	284	52	55	9.0000
]gg	chr12:30881592-30881916(-)$1	324	226	229	9.0000
$$$	chr17:43170954-43171219(+)$1	265	14	17	9.0000
ggg	chr6:13620349-13620623(+)$1	274	65	68	9.0000
fff	chr14:21162057-21162355(+)$1	298	93	96	9.0000
rrr	chr1:8073675-8073999(-)$1	324	109	112	9.0000
ssd	chr3:133495796-133496031(+)$1	235	18	21	9.0000
PPP	chr11:121437615-121437915(+)$1	300	17	20	9.0000
sss	chr5:131923635-131923887(+)$1	252	159	162	9.0000
ttt	chr12:46758333-46758581(-)$1	248	39	42	9.0000
DD}	chr3:133494342-133494561(+)$1	219	145	148	9.0000
d[b	chr11:93470268-93470505(-)$1	237	5	8	9.0000
ccc	chr8:17541750-17542040(-)$1	290	117	120	9.0000
bmm	chr6:56365854-56366133(-)$1	279	23	26	9.0000
BKK	chr7:75608783-75608997(+)$1	214	36	39	9.0000
GGG	chr3:160135459-160135767(+)$1	308	3	6	9.0000
:::	chr2:62934045-62934299(+)$1	254	113	116	9.0000
:::	chr12:104341397-104341629(+)$1	232	2	5	9.0000
:::	chr15:93492078-93492409(+)$1	331	1	4	9.0000
fff	chr2:216230130-216230353(-)$1	223	144	147	9.0000
+++	chr12:57106479-57106789(-)$1	310	63	66	9.0000
::e	chr20:34302061-34302311(-)$1	250	0	3	9.0000
nff	chr19:19135637-19135935(-)$1	298	30	33	9.0000
JJJ	chr6:56392299-56392573(-)$1	274	0	3	9.0000
:::	chr3:50107822-50108085(+)$1	263	3	6	9.0000
:::	chr11:61732740-61732948(-)$1	208	0	3	9.0000
d""	chr1:16893568-16893822(-)$1	254	100	103	9.0000
sss	chr11:118887971-118888192(-)$1	221	146	149	9.0000
:JJ	chr4:56283229-56283565(+)$1	336	0	3	9.0000
hhh	chr8:124371716-124371962(-)$1	246	5	8	9.0000
:::	chr1:1325507-1325745(-)$1	238	232	235	9.0000
DDD	chr14:35062149-35062445(-)$1	296	5	8	9.0000
:::	chr12:69646790-69647036(+)$1	246	0	3	9.0000
eee	chr8:40011488-40011770(+)$1	282	79	82	9.0000
ddd	chr17:37360787-37361008(+)$1	221	83	86	9.0000
:::	chr12:46764996-46765252(-)$1	256	82	85	9.0000
!!g	chr11:129990503-129990757(+)$1	254	43	46	9.0000
ggg	chr8:17504458-17504691(-)$1	233	55	58	9.0000
hhh	chr2:216983754-216983988(+)$1	234	5	8	9.0000
GGG	chr7:134625783-134626053(+)$1	270	17	20	9.0000
lll	chr16:22308640-22308901(+)$1	261	104	107	9.0000
(((	chr12:56495502-56495799(+)$1	297	189	192	9.0000
fff	chr6:56376057-56376298(-)$1	241	2	5	9.0000
ccc	chr3:50012668-50012910(+)$1	242	41	44	9.0000
c[e	chr5:179153580-179153859(+)$1	279	70	73	9.0000
[ee	chr1:113471756-113472069(-)$1	313	23	26	9.0000
HHH	chr17:62500106-62500326(-)$1	220	20	23	9.0000
FFF	chr17:16042307-16042564(-)$1	257	18	21	9.0000
fff	chr13:107220077-107220382(-)$1	305	4	7	9.0000
^^^	chr11:102269453-102269723(-)$1	270	23	26	9.0000
eee	chr15:44062620-44062879(+)$1	259	87	90	9.0000
KKD	chr4:184180756-184180982(+)$1	226	8	11	9.0000
::c	chr7:5754583-5754868(-)$1	285	18	21	9.0000
EEE	chr20:30729197-30729437(+)$1	240	11	14	9.0000
ff0	chr6:56362552-56362834(-)$1	282	104	107	9.0000
rrr	chr7:22354888-22355193(-)$1	305	71	74	9.0000
JJJ	chr3:156870760-156870999(-)$1	239	5	8	9.0000
fff	chr20:29623033-29623305(+)$1	272	18	21	9.0000
DDD	chr3:121412678-121412951(-)$1	273	37	40	9.0000
HHH	chr16:89348943-89349166(-)$1	223	188	191	9.0000
::G	chr17:62500021-62500306(-)$1	285	0	3	9.0000
III	chr8:56986162-56986427(-)$1	265	9	12	9.0000
GGG	chr5:174935976-174936294(+)$1	318	17	20	9.0000
+++	chr10:79793524-79793757(+)$1	233	99	102	9.0000
iii	chr11:61732480-61732684(-)$1	204	14	17	9.0000
::B	chr11:77335925-77336218(-)$1	293	0	3	9.0000
C::	chr1:28564263-28564577(+)$1	314	24	27	9.0000
fff	chr15:81271359-81271662(-)$1	303	152	155	9.0000
:::	chr2:217366030-217366264(+)$1	234	22	25	9.0000
ff#	chr8:141745248-141745610(-)$1	362	36	39	9.0000

#DB
...	chr11:14515721-14516018(-)$1	1	6	9	9.0000
)))	chr2:207027112-207027329(+)$1	1	28	31	9.0000
...	chr12:9261872-9262095(-)$1	1	76	79	9.0000
(((	chr19:5598705-5598997(-)$1	1	41	44	9.0000
(((	chr7:98997873-98998148(-)$1	1	1	4	9.0000
((.	chr1:150192884-150193167(-)$1	1	24	27	9.0000
)))	chr3:133495853-133496085(+)$1	1	21	24	9.0000
...	chr7:100780744-100780965(+)$1	1	53	56	9.0000
((.	chr11:129999832-130000047(+)$1	1	5	8	9.0000
(((	chr14:39648330-39648541(+)$1	1	51	54	9.0000
...	chr7:100780765-100780997(+)$1	1	32	35	9.0000
.))	chr14:21679462-21679726(-)$1	1	241	244	9.0000
(..	chr16:248974-249339(-)$1	1	27	30	9.0000
...	chr13:79894605-79894911(-)$1	1	6	9	9.0000
...	chr7:100770345-100770574(+)$1	1	48	51	9.0000
(((	chr4:39329053-39329354(-)$1	1	108	111	9.0000
(((	chr14:24606809-24607107(+)$1	1	28	31	9.0000
...	chr12:56574671-56574980(-)$1	1	73	76	9.0000
)))	chrX:23801367-23801631(+)$1	1	217	220	9.0000
...	chr16:48303825-48304193(+)$1	1	3	6	9.0000
.))	chr1:44010601-44010866(+)$1	1	210	213	9.0000
(..	chr17:16046859-16047112(-)$1	1	39	42	9.0000
(..	chr5:179149896-179150120(+)$1	1	23	26	9.0000
(..	chr17:62498455-62498663(-)$1	1	49	52	9.0000
..(	chr3:50091681-50091923(+)$1	1	3	6	9.0000
(((	chr14:39648341-39648550(+)$1	1	40	43	9.0000
...	chr20:34293067-34293342(-)$1	1	10	13	9.0000
..)	chr3:79067523-79067804(-)$1	1	100	103	9.0000
(((	chr11:129996494-129996727(+)$1	1	37	40	9.0000
...	chr2:198359931-198360165(-)$1	1	1	4	9.0000
...	chr4:39901944-39902228(-)$1	1	52	55	9.0000
.))	chr12:30881592-30881916(-)$1	1	226	229	9.0000
...	chr17:43170954-43171219(+)$1	1	14	17	9.0000
)))	chr6:13620349-13620623(+)$1	1	65	68	9.0000
)))	chr14:21162057-21162355(+)$1	1	93	96	9.0000
...	chr1:8073675-8073999(-)$1	1	109	112	9.0000
..)	chr3:133495796-133496031(+)$1	1	18	21	9.0000
...	chr11:121437615-121437915(+)$1	1	17	20	9.0000
...	chr5:131923635-131923887(+)$1	1	159	162	9.0000
...	chr12:46758333-46758581(-)$1	1	39	42	9.0000
)).	chr3:133494342-133494561(+)$1	1	145	148	9.0000
(.(	chr11:93470268-93470505(-)$1	1	5	8	9.0000
)))	chr8:17541750-17542040(-)$1	1	117	120	9.0000
(..	chr6:56365854-56366133(-)$1	1	23	26	9.0000
(..	chr7:75608783-75608997(+)$1	1	36	39	9.0000
(((	chr3:160135459-160135767(+)$1	1	3	6	9.0000
...	chr2:62934045-62934299(+)$1	1	113	116	9.0000
...	chr12:104341397-104341629(+)$1	1	2	5	9.0000
...	chr15:93492078-93492409(+)$1	1	1	4	9.0000
)))	chr2:216230130-216230353(-)$1	1	144	147	9.0000
...	chr12:57106479-57106789(-)$1	1	63	66	9.0000
..(	chr20:34302061-34302311(-)$1	1	0	3	9.0000
.))	chr19:19135637-19135935(-)$1	1	30	33	9.0000
(((	chr6:56392299-56392573(-)$1	1	0	3	9.0000
...	chr3:50107822-50108085(+)$1	1	3	6	9.0000
...	chr11:61732740-61732948(-)$1	1	0	3	9.0000
(..	chr1:16893568-16893822(-)$1	1	100	103	9.0000
...	chr11:118887971-118888192(-)$1	1	146	149	9.0000
.((	chr4:56283229-56283565(+)$1	1	0	3	9.0000
(((	chr8:124371716-124371962(-)$1	1	5	8	9.0000
...	chr1:1325507-1325745(-)$1	1	232	235	9.0000
(((	chr14:35062149-35062445(-)$1	1	5	8	9.0000
...	chr12:69646790-69647036(+)$1	1	0	3	9.0000
(((	chr8:40011488-40011770(+)$1	1	79	82	9.0000
(((	chr17:37360787-37361008(+)$1	1	83	86	9.0000
...	chr12:46764996-46765252(-)$1	1	82	85	9.0000
..(	chr11:129990503-129990757(+)$1	1	43	46	9.0000
)))	chr8:17504458-17504691(-)$1	1	55	58	9.0000
(((	chr2:216983754-216983988(+)$1	1	5	8	9.0000
(((	chr7:134625783-134626053(+)$1	1	17	20	9.0000
...	chr16:22308640-22308901(+)$1	1	104	107	9.0000
...	chr12:56495502-56495799(+)$1	1	189	192	9.0000
(((	chr6:56376057-56376298(-)$1	1	2	5	9.0000
)))	chr3:50012668-50012910(+)$1	1	41	44	9.0000
(.(	chr5:179153580-179153859(+)$1	1	70	73	9.0000
.((	chr1:113471756-113472069(-)$1	1	23	26	9.0000
(((	chr17:62500106-62500326(-)$1	1	20	23	9.0000
(((	chr17:16042307-16042564(-)$1	1	18	21	9.0000
(((	chr13:107220077-107220382(-)$1	1	4	7	9.0000
...	chr11:102269453-102269723(-)$1	1	23	26	9.0000
)))	chr15:44062620-44062879(+)$1	1	87	90	9.0000
..(	chr4:184180756-184180982(+)$1	1	8	11	9.0000
..(	chr7:5754583-5754868(-)$1	1	18	21	9.0000
(((	chr20:30729197-30729437(+)$1	1	11	14	9.0000
)).	chr6:56362552-56362834(-)$1	1	104	107	9.0000
...	chr7:22354888-22355193(-)$1	1	71	74	9.0000
(((	chr3:156870760-156870999(-)$1	1	5	8	9.0000
(((	chr20:29623033-29623305(+)$1	1	18	21	9.0000
(((	chr3:121412678-121412951(-)$1	1	37	40	9.0000
)))	chr16:89348943-89349166(-)$1	1	188	191	9.0000
..(	chr17:62500021-62500306(-)$1	1	0	3	9.0000
(((	chr8:56986162-56986427(-)$1	1	9	12	9.0000
(((	chr5:174935976-174936294(+)$1	1	17	20	9.0000
...	chr10:79793524-79793757(+)$1	1	99	102	9.0000
(((	chr11:61732480-61732684(-)$1	1	14	17	9.0000
..(	chr11:77335925-77336218(-)$1	1	0	3	9.0000
(..	chr1:28564263-28564577(+)$1	1	24	27	9.0000
)))	chr15:81271359-81271662(-)$1	1	152	155	9.0000
...	chr2:217366030-217366264(+)$1	1	22	25	9.0000
((.	chr8:141745248-141745610(-)$1	1	36	39	9.0000

#PSSM
U : 0.97	u : 0.03	
U : 0.97	u : 0.03	
U : 0.97	u : 0.03	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_CDS_m2_run1.nuc.txt

#NT
UGU	chr17:42931537-42931789(-)$1	252	52	55	9.0000
UGU	chr15:44060586-44060829(+)$1	243	40	43	9.0000
UGU	chrX:118604895-118605141(+)$1	246	59	62	9.0000
UGU	chr12:120145938-120146198(-)$1	260	56	59	9.0000
ugu	chr1:12081635-12081938(+)$1	303	44	47	9.0000
UGU	chr9:114997050-114997275(-)$1	225	2	5	9.0000
UGU	chr1:182354817-182355029(-)$1	212	2	5	9.0000
UGU	chr11:9459387-9459622(+)$1	235	13	16	9.0000
UGU	chr10:73579171-73579421(-)$1	250	37	40	9.0000
UGU	chr6:64418943-64419234(+)$1	291	3	6	9.0000
UGU	chr11:17097047-17097261(-)$1	214	50	53	9.0000
UGU	chr7:30544083-30544304(-)$1	221	31	34	9.0000
UGU	chr1:186296625-186296896(-)$1	271	58	61	9.0000
UGU	chr2:54041577-54041858(+)$1	281	82	85	9.0000
ugu	chrX:24080432-24080639(+)$1	207	19	22	9.0000
UGU	chr19:39306830-39307040(-)$1	210	192	195	9.0000
UGU	chr19:2235659-2235895(-)$1	236	56	59	9.0000
UGU	chr12:7079548-7079793(-)$1	245	160	163	9.0000
UGU	chr11:65660555-65660844(-)$1	289	265	268	9.0000
UGU	chr7:50467938-50468204(+)$1	266	103	106	9.0000
UGU	chrX:148571812-148572073(-)$1	261	42	45	9.0000
UGU	chr12:110873821-110874047(-)$1	226	25	28	9.0000
UGU	chr10:70679600-70679823(+)$1	223	2	5	9.0000
UGU	chr3:172534419-172534731(+)$1	312	15	18	9.0000
UGU	chr3:127786723-127786998(+)$1	275	21	24	9.0000
UGU	chr2:96956073-96956339(-)$1	266	12	15	9.0000
UGU	chr11:67274739-67275014(-)$1	275	28	31	9.0000
UGU	chr5:223494-223779(+)$1	285	52	55	9.0000
UGU	chr21:37716772-37717064(+)$1	292	33	36	9.0000
UGU	chr19:39926155-39926366(-)$1	211	6	9	9.0000
UGU	chr12:7076765-7076978(-)$1	213	103	106	9.0000
UGU	chr1:45227541-45227756(+)$1	215	76	79	9.0000
UGU	chr10:106019420-106019657(+)$1	237	37	40	9.0000
UGU	chr16:69352624-69352901(+)$1	277	8	11	9.0000
UGU	chrX:153593409-153593661(-)$1	252	23	26	9.0000
UGU	chr12:64812748-64812963(+)$1	215	107	110	9.0000
UGU	chr16:28855537-28855755(-)$1	218	1	4	9.0000
UGU	chr17:42089453-42089664(-)$1	211	26	29	9.0000
UGU	chr1:32508026-32508244(+)$1	218	8	11	9.0000
UGU	chr16:11971280-11971538(-)$1	258	45	48	9.0000
UGU	chr1:227216420-227216687(-)$1	267	46	49	9.0000
UGU	chr2:71303636-71303920(+)$1	284	3	6	9.0000
UGU	chr11:118923311-118923530(-)$1	219	88	91	9.0000
UGU	chr17:80430375-80430602(+)$1	227	74	77	9.0000
UGU	chr6:159190835-159191064(-)$1	229	1	4	9.0000
UGU	chr20:36769680-36769888(-)$1	208	56	59	9.0000
UGU	chr12:132630001-132630268(+)$1	267	61	64	9.0000
UGU	chr11:62327151-62327356(-)$1	205	7	10	9.0000
UGU	chr8:42022488-42022739(+)$1	251	38	41	9.0000
UGU	chr12:69653722-69653978(+)$1	256	8	11	9.0000
UGU	chr17:80044825-80045027(-)$1	202	57	60	9.0000
UGU	chr15:58971287-58971539(-)$1	252	15	18	9.0000
UGU	chr1:229657266-229657483(-)$1	217	63	66	9.0000
UGU	chr17:28598192-28598495(-)$1	303	67	70	9.0000
UGU	chr15:34393735-34394011(-)$1	276	30	33	9.0000
UGU	chrX:67742505-67742768(+)$1	263	27	30	9.0000
UGu	chr22:18185001-18185238(+)$1	237	159	162	9.0000
UGU	chr12:109094800-109095060(-)$1	260	1	4	9.0000
UGU	chr3:69097522-69097806(-)$1	284	47	50	9.0000
UGU	chr9:128111594-128111869(+)$1	275	67	70	9.0000
UGU	chr9:131748784-131749059(+)$1	275	18	21	9.0000
UGU	chr1:22216976-22217183(-)$1	207	83	86	9.0000
UGU	chr22:40351724-40352011(+)$1	287	43	46	9.0000
UGU	chr17:1564826-1565037(-)$1	211	33	36	9.0000
UGU	chr2:85808673-85808938(+)$1	265	93	96	9.0000
UGU	chr7:100276217-100276441(+)$1	224	161	164	9.0000
UGU	chr12:98995051-98995302(+)$1	251	17	20	9.0000
UGU	chr17:80841920-80842179(+)$1	259	40	43	9.0000
UGU	chr12:1017031-1017285(+)$1	254	0	3	9.0000
UGU	chr1:32505041-32505274(+)$1	233	40	43	9.0000
UGU	chr16:2303707-2303935(-)$1	228	24	27	9.0000
UGU	chr1:32504099-32504311(+)$1	212	36	39	9.0000
UGU	chr11:57080281-57080517(-)$1	236	4	7	9.0000
UGU	chr17:42398386-42398685(-)$1	299	33	36	9.0000
UGU	chr9:123949150-123949389(-)$1	239	7	10	9.0000
UGU	chr7:2414943-2415177(+)$1	234	65	68	9.0000
UGU	chr11:118460976-118461271(+)$1	295	58	61	9.0000
ugU	chr2:183841526-183841780(-)$1	254	12	15	9.0000
UGU	chr1:101479239-101479476(-)$1	237	50	53	9.0000
UGU	chr14:53138247-53138522(-)$1	275	39	42	9.0000
UGU	chr10:75541854-75542058(+)$1	204	35	38	9.0000
UGU	chr17:46052778-46052991(+)$1	213	30	33	9.0000
UGU	chr22:19395920-19396213(-)$1	293	89	92	9.0000
UGU	chr16:58149842-58150065(-)$1	223	72	75	9.0000
UGU	chr20:2640580-2640855(-)$1	275	59	62	9.0000
UGU	chr9:35075503-35075784(-)$1	281	63	66	9.0000
UGU	chrX:154013317-154013532(-)$1	215	84	87	9.0000
UGU	chr6:33240391-33240597(+)$1	206	141	144	9.0000
UGU	chr11:47605770-47606031(+)$1	261	22	25	9.0000
UGU	chr22:32894327-32894600(+)$1	273	176	179	9.0000
UGU	chr15:80137532-80137848(-)$1	316	46	49	9.0000
UGU	chr8:41556868-41557125(-)$1	257	51	54	9.0000
UGU	chr3:41275025-41275285(+)$1	260	23	26	9.0000
UGU	chr8:126030772-126031022(+)$1	250	51	54	9.0000
UGU	chr15:72499367-72499593(-)$1	226	107	110	9.0000
UGU	chr6:597949-598209(-)$1	260	52	55	9.0000
UGU	chr8:11666257-11666496(+)$1	239	25	28	9.0000

#otherMatches

#Struct PSSM
EEE	chr8:124195079-124195347(+)$1	268	64	67	9.0000
FFF	chr17:42931537-42931789(-)$1	252	52	55	9.0000
ggr	chr15:44060586-44060829(+)$1	243	40	43	9.0000
ddd	chrX:118604895-118605141(+)$1	246	59	62	9.0000
iii	chr12:120145938-120146198(-)$1	260	56	59	9.0000
B{D	chr1:12081635-12081938(+)$1	303	44	47	9.0000
:::	chr9:114997050-114997275(-)$1	225	2	5	9.0000
eee	chr1:182354817-182355029(-)$1	212	2	5	9.0000
EEE	chr11:9459387-9459622(+)$1	235	13	16	9.0000
fff	chr10:73579171-73579421(-)$1	250	37	40	9.0000
{JJ	chr6:64418943-64419234(+)$1	291	3	6	9.0000
ddd	chr11:17097047-17097261(-)$1	214	50	53	9.0000
ppp	chr7:30544083-30544304(-)$1	221	31	34	9.0000
f22	chr1:186296625-186296896(-)$1	271	58	61	9.0000
fff	chr2:54041577-54041858(+)$1	281	82	85	9.0000
www	chrX:24080432-24080639(+)$1	207	19	22	9.0000
FFF	chr19:39306830-39307040(-)$1	210	192	195	9.0000
]ff	chr19:2235659-2235895(-)$1	236	56	59	9.0000
mmm	chr12:7079548-7079793(-)$1	245	160	163	9.0000
bdd	chr11:65660555-65660844(-)$1	289	265	268	9.0000
BB{	chr7:50467938-50468204(+)$1	266	103	106	9.0000
ccc	chrX:148571812-148572073(-)$1	261	42	45	9.0000
ggg	chr12:110873821-110874047(-)$1	226	25	28	9.0000
DDD	chr10:70679600-70679823(+)$1	223	2	5	9.0000
FFF	chr3:172534419-172534731(+)$1	312	15	18	9.0000
ttt	chr3:127786723-127786998(+)$1	275	21	24	9.0000
bb!	chr2:96956073-96956339(-)$1	266	12	15	9.0000
MMM	chr11:67274739-67275014(-)$1	275	28	31	9.0000
eee	chr5:223494-223779(+)$1	285	52	55	9.0000
FFF	chr21:37716772-37717064(+)$1	292	33	36	9.0000
{AK	chr19:39926155-39926366(-)$1	211	6	9	9.0000
qqc	chr12:7076765-7076978(-)$1	213	103	106	9.0000
eee	chr1:45227541-45227756(+)$1	215	76	79	9.0000
dd[	chr10:106019420-106019657(+)$1	237	37	40	9.0000
JJJ	chr16:69352624-69352901(+)$1	277	8	11	9.0000
eee	chrX:153593409-153593661(-)$1	252	23	26	9.0000
ggg	chr12:64812748-64812963(+)$1	215	107	110	9.0000
:::	chr16:28855537-28855755(-)$1	218	1	4	9.0000
hhh	chr17:42089453-42089664(-)$1	211	26	29	9.0000
BJJ	chr1:32508026-32508244(+)$1	218	8	11	9.0000
ccc	chr16:11971280-11971538(-)$1	258	45	48	9.0000
ccc	chr1:227216420-227216687(-)$1	267	46	49	9.0000
ee#	chr2:71303636-71303920(+)$1	284	3	6	9.0000
FF:	chr11:118923311-118923530(-)$1	219	88	91	9.0000
c33	chr17:80430375-80430602(+)$1	227	74	77	9.0000
:::	chr6:159190835-159191064(-)$1	229	1	4	9.0000
ee!	chr20:36769680-36769888(-)$1	208	56	59	9.0000
DDD	chr12:132630001-132630268(+)$1	267	61	64	9.0000
ooo	chr11:62327151-62327356(-)$1	205	7	10	9.0000
%%%	chr8:42022488-42022739(+)$1	251	38	41	9.0000
fff	chr12:69653722-69653978(+)$1	256	8	11	9.0000
JJJ	chr17:80044825-80045027(-)$1	202	57	60	9.0000
bb[	chr15:58971287-58971539(-)$1	252	15	18	9.0000
dd2	chr1:229657266-229657483(-)$1	217	63	66	9.0000
ccc	chr17:28598192-28598495(-)$1	303	67	70	9.0000
b[c	chr15:34393735-34394011(-)$1	276	30	33	9.0000
===	chrX:67742505-67742768(+)$1	263	27	30	9.0000
mmf	chr22:18185001-18185238(+)$1	237	159	162	9.0000
ddd	chr12:109094800-109095060(-)$1	260	1	4	9.0000
"""	chr3:69097522-69097806(-)$1	284	47	50	9.0000
EEE	chr9:128111594-128111869(+)$1	275	67	70	9.0000
:CC	chr9:131748784-131749059(+)$1	275	18	21	9.0000
mmb	chr1:22216976-22217183(-)$1	207	83	86	9.0000
dd:	chr22:40351724-40352011(+)$1	287	43	46	9.0000
eee	chr17:1564826-1565037(-)$1	211	33	36	9.0000
==[	chr2:85808673-85808938(+)$1	265	93	96	9.0000
HHH	chr7:100276217-100276441(+)$1	224	161	164	9.0000
:::	chr12:98995051-98995302(+)$1	251	17	20	9.0000
ggg	chr17:80841920-80842179(+)$1	259	40	43	9.0000
:DD	chr12:1017031-1017285(+)$1	254	0	3	9.0000
KCC	chr1:32505041-32505274(+)$1	233	40	43	9.0000
:::	chr16:2303707-2303935(-)$1	228	24	27	9.0000
ggg	chr1:32504099-32504311(+)$1	212	36	39	9.0000
CCC	chr11:57080281-57080517(-)$1	236	4	7	9.0000
c]a	chr17:42398386-42398685(-)$1	299	33	36	9.0000
fff	chr9:123949150-123949389(-)$1	239	7	10	9.0000
##b	chr7:2414943-2415177(+)$1	234	65	68	9.0000
EEE	chr11:118460976-118461271(+)$1	295	58	61	9.0000
:::	chr2:183841526-183841780(-)$1	254	12	15	9.0000
ggg	chr1:101479239-101479476(-)$1	237	50	53	9.0000
:==	chr14:53138247-53138522(-)$1	275	39	42	9.0000
EEE	chr10:75541854-75542058(+)$1	204	35	38	9.0000
HBB	chr17:46052778-46052991(+)$1	213	30	33	9.0000
ppp	chr22:19395920-19396213(-)$1	293	89	92	9.0000
ddd	chr16:58149842-58150065(-)$1	223	72	75	9.0000
]dd	chr20:2640580-2640855(-)$1	275	59	62	9.0000
GGL	chr9:35075503-35075784(-)$1	281	63	66	9.0000
ddd	chrX:154013317-154013532(-)$1	215	84	87	9.0000
ZZB	chr6:33240391-33240597(+)$1	206	141	144	9.0000
sss	chr11:47605770-47606031(+)$1	261	22	25	9.0000
HHH	chr22:32894327-32894600(+)$1	273	176	179	9.0000
EEE	chr15:80137532-80137848(-)$1	316	46	49	9.0000
bpp	chr8:41556868-41557125(-)$1	257	51	54	9.0000
c::	chr3:41275025-41275285(+)$1	260	23	26	9.0000
fff	chr8:126030772-126031022(+)$1	250	51	54	9.0000
eew	chr15:72499367-72499593(-)$1	226	107	110	9.0000
DDD	chr6:597949-598209(-)$1	260	52	55	9.0000
HHH	chr8:11666257-11666496(+)$1	239	25	28	9.0000

#DB
(((	chr8:124195079-124195347(+)$1	1	64	67	9.0000
(((	chr17:42931537-42931789(-)$1	1	52	55	9.0000
((.	chr15:44060586-44060829(+)$1	1	40	43	9.0000
)))	chrX:118604895-118605141(+)$1	1	59	62	9.0000
)))	chr12:120145938-120146198(-)$1	1	56	59	9.0000
(.(	chr1:12081635-12081938(+)$1	1	44	47	9.0000
...	chr9:114997050-114997275(-)$1	1	2	5	9.0000
(((	chr1:182354817-182355029(-)$1	1	2	5	9.0000
(((	chr11:9459387-9459622(+)$1	1	13	16	9.0000
(((	chr10:73579171-73579421(-)$1	1	37	40	9.0000
.((	chr6:64418943-64419234(+)$1	1	3	6	9.0000
)))	chr11:17097047-17097261(-)$1	1	50	53	9.0000
...	chr7:30544083-30544304(-)$1	1	31	34	9.0000
)..	chr1:186296625-186296896(-)$1	1	58	61	9.0000
(((	chr2:54041577-54041858(+)$1	1	82	85	9.0000
...	chrX:24080432-24080639(+)$1	1	19	22	9.0000
)))	chr19:39306830-39307040(-)$1	1	192	195	9.0000
.))	chr19:2235659-2235895(-)$1	1	56	59	9.0000
...	chr12:7079548-7079793(-)$1	1	160	163	9.0000
)))	chr11:65660555-65660844(-)$1	1	265	268	9.0000
((.	chr7:50467938-50468204(+)$1	1	103	106	9.0000
)))	chrX:148571812-148572073(-)$1	1	42	45	9.0000
)))	chr12:110873821-110874047(-)$1	1	25	28	9.0000
(((	chr10:70679600-70679823(+)$1	1	2	5	9.0000
(((	chr3:172534419-172534731(+)$1	1	15	18	9.0000
...	chr3:127786723-127786998(+)$1	1	21	24	9.0000
((.	chr2:96956073-96956339(-)$1	1	12	15	9.0000
...	chr11:67274739-67275014(-)$1	1	28	31	9.0000
)))	chr5:223494-223779(+)$1	1	52	55	9.0000
(((	chr21:37716772-37717064(+)$1	1	33	36	9.0000
.(.	chr19:39926155-39926366(-)$1	1	6	9	9.0000
..)	chr12:7076765-7076978(-)$1	1	103	106	9.0000
(((	chr1:45227541-45227756(+)$1	1	76	79	9.0000
((.	chr10:106019420-106019657(+)$1	1	37	40	9.0000
(((	chr16:69352624-69352901(+)$1	1	8	11	9.0000
(((	chrX:153593409-153593661(-)$1	1	23	26	9.0000
(((	chr12:64812748-64812963(+)$1	1	107	110	9.0000
...	chr16:28855537-28855755(-)$1	1	1	4	9.0000
)))	chr17:42089453-42089664(-)$1	1	26	29	9.0000
(((	chr1:32508026-32508244(+)$1	1	8	11	9.0000
(((	chr16:11971280-11971538(-)$1	1	45	48	9.0000
(((	chr1:227216420-227216687(-)$1	1	46	49	9.0000
((.	chr2:71303636-71303920(+)$1	1	3	6	9.0000
((.	chr11:118923311-118923530(-)$1	1	88	91	9.0000
)..	chr17:80430375-80430602(+)$1	1	74	77	9.0000
...	chr6:159190835-159191064(-)$1	1	1	4	9.0000
((.	chr20:36769680-36769888(-)$1	1	56	59	9.0000
(((	chr12:132630001-132630268(+)$1	1	61	64	9.0000
...	chr11:62327151-62327356(-)$1	1	7	10	9.0000
...	chr8:42022488-42022739(+)$1	1	38	41	9.0000
(((	chr12:69653722-69653978(+)$1	1	8	11	9.0000
)))	chr17:80044825-80045027(-)$1	1	57	60	9.0000
((.	chr15:58971287-58971539(-)$1	1	15	18	9.0000
)).	chr1:229657266-229657483(-)$1	1	63	66	9.0000
(((	chr17:28598192-28598495(-)$1	1	67	70	9.0000
(.(	chr15:34393735-34394011(-)$1	1	30	33	9.0000
)))	chrX:67742505-67742768(+)$1	1	27	30	9.0000
..)	chr22:18185001-18185238(+)$1	1	159	162	9.0000
(((	chr12:109094800-109095060(-)$1	1	1	4	9.0000
...	chr3:69097522-69097806(-)$1	1	47	50	9.0000
(((	chr9:128111594-128111869(+)$1	1	67	70	9.0000
.((	chr9:131748784-131749059(+)$1	1	18	21	9.0000
..)	chr1:22216976-22217183(-)$1	1	83	86	9.0000
)).	chr22:40351724-40352011(+)$1	1	43	46	9.0000
(((	chr17:1564826-1565037(-)$1	1	33	36	9.0000
((.	chr2:85808673-85808938(+)$1	1	93	96	9.0000
)))	chr7:100276217-100276441(+)$1	1	161	164	9.0000
...	chr12:98995051-98995302(+)$1	1	17	20	9.0000
(((	chr17:80841920-80842179(+)$1	1	40	43	9.0000
.((	chr12:1017031-1017285(+)$1	1	0	3	9.0000
.((	chr1:32505041-32505274(+)$1	1	40	43	9.0000
...	chr16:2303707-2303935(-)$1	1	24	27	9.0000
(((	chr1:32504099-32504311(+)$1	1	36	39	9.0000
(((	chr11:57080281-57080517(-)$1	1	4	7	9.0000
).)	chr17:42398386-42398685(-)$1	1	33	36	9.0000
(((	chr9:123949150-123949389(-)$1	1	7	10	9.0000
..(	chr7:2414943-2415177(+)$1	1	65	68	9.0000
(((	chr11:118460976-118461271(+)$1	1	58	61	9.0000
...	chr2:183841526-183841780(-)$1	1	12	15	9.0000
(((	chr1:101479239-101479476(-)$1	1	50	53	9.0000
.((	chr14:53138247-53138522(-)$1	1	39	42	9.0000
(((	chr10:75541854-75542058(+)$1	1	35	38	9.0000
(((	chr17:46052778-46052991(+)$1	1	30	33	9.0000
...	chr22:19395920-19396213(-)$1	1	89	92	9.0000
)))	chr16:58149842-58150065(-)$1	1	72	75	9.0000
.))	chr20:2640580-2640855(-)$1	1	59	62	9.0000
((.	chr9:35075503-35075784(-)$1	1	63	66	9.0000
)))	chrX:154013317-154013532(-)$1	1	84	87	9.0000
..)	chr6:33240391-33240597(+)$1	1	141	144	9.0000
...	chr11:47605770-47606031(+)$1	1	22	25	9.0000
)))	chr22:32894327-32894600(+)$1	1	176	179	9.0000
(((	chr15:80137532-80137848(-)$1	1	46	49	9.0000
(..	chr8:41556868-41557125(-)$1	1	51	54	9.0000
)..	chr3:41275025-41275285(+)$1	1	23	26	9.0000
)))	chr8:126030772-126031022(+)$1	1	51	54	9.0000
((.	chr15:72499367-72499593(-)$1	1	107	110	9.0000
(((	chr6:597949-598209(-)$1	1	52	55	9.0000
(((	chr8:11666257-11666496(+)$1	1	25	28	9.0000

#PSSM
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	
U : 0.96	u : 0.03	

#score	882.0000000000002
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_UTR_m2_run2.nuc.txt

#NT
ggggugggguggggu	chr16:1741690-1741952(+)$1	262	88	103	26.0784
ggggcggggugcgga	chr17:36955606-36955943(-)$1	337	40	55	22.4509
GGGCUGGGCUGGAGC	chr2:202001766-202002064(+)$1	298	169	184	16.2745
GGCCCGAGGUGGGGG	chr2:191513878-191514187(+)$1	309	25	40	18.0392
GGGGUGGGGAGGGCU	chr8:94753030-94753280(-)$1	250	218	233	20.9803
GUGCUGGGGAGGCGA	chr20:62330389-62330646(-)$1	257	129	144	15.0000
GGUCUGGAGAGGGGG	chr1:2122238-2122504(-)$1	266	101	116	15.7843
GCGAUGGGGAGGGGC	chr17:8378145-8378435(+)$1	290	115	130	18.8235
GGAGUGGGGAGGGCU	chr4:763952-764205(-)$1	253	99	114	17.3529
GAGACGGGGUGGGGA	chr7:1007846-1008163(-)$1	317	110	125	20.4901
GGGCCUGGGUGGCGG	chr19:13263806-13264052(+)$1	246	37	52	17.7450
ggggagggcuggggc	chr10:126848850-126849091(-)$1	241	219	234	20.9803
ggguagggguggggg	chr1:155947809-155948086(-)$1	277	98	113	23.2352
GGGGAGGAGAGGGGU	chr17:62893384-62893718(-)$1	334	171	186	18.9215
ggggcggggcggggg	chr1:245026251-245026534(-)$1	283	113	128	26.2745
gggccggggcggggc	chr12:104697385-104697719(+)$1	334	59	74	22.9411
GGGGCGGGGUGGGCU	chr3:195622702-195622958(-)$1	256	240	255	23.1372
GGGGAGUGGUGGUGA	chr4:516178-516419(+)$1	241	99	114	16.5686
UUGGAGGGGUGGGGA	chr11:74976691-74976945(-)$1	254	95	110	16.8627
GGGGCGGGGCCUGGC	chr19:18548014-18548297(-)$1	283	115	130	17.0588
gggccgggggcgggg	chr9:139560083-139560354(+)$1	271	94	109	19.3137
GGGCCGGGGUCGGGG	chr19:1104362-1104635(+)$1	273	68	83	21.8627
ACGGUGGGGUGGGGU	chr19:2425971-2426224(-)$1	253	59	74	18.5294
GGGGUUGGGGGGAGC	chr12:125398765-125399053(-)$1	288	47	62	15.5882
gggaaggggcggggg	chr19:42788109-42788379(+)$1	270	51	66	21.9607
GGGGCGGGGUGGGGC	chr19:58991071-58991363(-)$1	292	240	255	26.8627
GGGGUCUGGUGGGGG	chr16:87730996-87731258(-)$1	262	245	260	19.2156
GCGGUGAGGUGUGGC	chr19:1472446-1472699(-)$1	253	29	44	14.7058
ggAGCGGAGUGUGGG	chr19:50354287-50354570(-)$1	283	248	263	16.2745
GGGGCGGGGCUUGGA	chr3:9851513-9851805(+)$1	292	54	69	16.5686
ggggcggggaggggg	chr21:46494359-46494614(+)$1	255	98	113	26.3725
GGCACGGGCUggggg	chr14:105715325-105715579(-)$1	254	99	114	17.9411
GGCGCGGGGUGGCGG	chr3:128211654-128211981(+)$1	327	184	199	20.5882
AGGGCGCGGUGGGUG	chr10:17271170-17271440(-)$1	270	89	104	15.7843
GUGGUGGCGCGGGGA	chr2:97535591-97535833(-)$1	242	38	53	16.4705
GGGGCGGAGUGGGUU	chr8:144678741-144679003(-)$1	262	111	126	18.6274
gggcugggcaggggu	chr7:2147098-2147404(-)$1	306	145	160	18.2352
GGAGUGGGGUGGCGG	chr1:2326295-2326542(+)$1	247	97	112	20.0980
GUGCCGGGGCGGGGA	chr9:139715781-139716021(+)$1	240	77	92	19.2156
GGGAUGGGGCGGAGG	chr19:16187671-16187996(+)$1	325	94	109	19.4117
GGCACGGGCUggggg	chr14:105715431-105715697(-)$1	266	217	232	17.9411
GGGGCCGGGAGGGCG	chr8:144679188-144679513(-)$1	325	48	63	18.7254
GGGGUCUGGUGGGGG	chr16:87730764-87731032(-)$1	268	19	34	19.2156
aggguggggaagggc	chr22:50013912-50014185(-)$1	273	101	116	16.2745
ACGGCGGGGUGGGAG	chr16:75018775-75019059(-)$1	284	92	107	16.6666
GGGGCGGGGCGCGCG	chr19:1206001-1206284(+)$1	283	94	109	18.6274
GGAGUGGGGAGGGAG	chr7:100732784-100733066(+)$1	282	100	115	18.4313
GAGAUGGGGUGGGGA	chr22:19951898-19952165(+)$1	267	248	263	20.0000
GCUUUGGGGUGGGGG	chr17:27404386-27404653(-)$1	267	109	124	17.3529
ggggcggggcggggc	chr1:36789201-36789461(+)$1	260	52	67	25.0980

#otherMatches

#Struct PSSM
VVVHHHHHHHH{AAA	chr19:2270196-2270466(+)$1	270	29	44	19.4117
mmmmbb]ddddGGGG	chr16:1741690-1741952(+)$1	262	88	103	26.0784
bb:BBKKEEEEE{FF	chr17:36955606-36955943(-)$1	337	40	55	22.4509
:iiiiiiiii####f	chr2:202001766-202002064(+)$1	298	169	184	16.2745
J{CCCgggggggccc	chr2:191513878-191514187(+)$1	309	25	40	18.0392
gggg]ccc:::dddd	chr8:94753030-94753280(-)$1	250	218	233	20.9803
GGGGGFFFFFFKKDD	chr20:62330389-62330646(-)$1	257	129	144	15.0000
YDDDDZZZDDDD~~~	chr1:2122238-2122504(-)$1	266	101	116	15.7843
f[a!!cccooooooc	chr17:8378145-8378435(+)$1	290	115	130	18.8235
CC:::CCC{BB{DDD	chr4:763952-764205(-)$1	253	99	114	17.3529
========]ccc]dd	chr7:1007846-1008163(-)$1	317	110	125	20.4901
qqccc::eeeee[dd	chr19:13263806-13264052(+)$1	246	37	52	17.7450
33eeeee:BB}JJJJ	chr10:126848850-126849091(-)$1	241	219	234	20.9803
]ccc::::::::::a	chr1:155947809-155948086(-)$1	277	98	113	23.2352
hhhhhhhh333dddd	chr17:62893384-62893718(-)$1	334	171	186	18.9215
}DDDDdddd[ggggg	chr1:245026251-245026534(-)$1	283	113	128	26.2745
diiiiiiiii:::CC	chr12:104697385-104697719(+)$1	334	59	74	22.9411
BBDDDD}BB}EEEEE	chr3:195622702-195622958(-)$1	256	240	255	23.1372
hhhhh]cccJJJJJJ	chr4:516178-516419(+)$1	241	99	114	16.5686
ddd!!a"""ddddqq	chr11:74976691-74976945(-)$1	254	95	110	16.8627
BBKKA{DDDDbb[ee	chr19:18548014-18548297(-)$1	283	115	130	17.0588
ggccc22dddd]fff	chr9:139560083-139560354(+)$1	271	94	109	19.3137
eeeeerrrrrrrrre	chr19:1104362-1104635(+)$1	273	68	83	21.8627
333ffffff]ccc]b	chr19:2425971-2426224(-)$1	253	59	74	18.5294
lldddd]dddd]ccc	chr12:125398765-125399053(-)$1	288	47	62	15.5882
CNNNNNGGGGGGG{C	chr19:42788109-42788379(+)$1	270	51	66	21.9607
eeeee:eeeeeeeee	chr19:58991071-58991363(-)$1	292	240	255	26.8627
FFFFDDDDGGGGGGG	chr16:87730996-87731258(-)$1	262	245	260	19.2156
HHHHHHHDDDD::::	chr19:1472446-1472699(-)$1	253	29	44	14.7058
rrrrrrrrbb]gggg	chr19:50354287-50354570(-)$1	283	248	263	16.2745
]a22ggggggg::::	chr3:9851513-9851805(+)$1	292	54	69	16.5686
iiiiiiii22bb]dd	chr21:46494359-46494614(+)$1	255	98	113	26.3725
CCC:::ffffffbbb	chr14:105715325-105715579(-)$1	254	99	114	17.9411
HHHHH{A{EEEEE{B	chr3:128211654-128211981(+)$1	327	184	199	20.5882
oooooobb4444bb]	chr10:17271170-17271440(-)$1	270	89	104	15.7843
dd####bb[ccc$$$	chr2:97535591-97535833(-)$1	242	38	53	16.4705
:ffffff%%%%%%ii	chr8:144678741-144679003(-)$1	262	111	126	18.6274
eeeee22bb:JJJJJ	chr7:2147098-2147404(-)$1	306	145	160	18.2352
qqqqqdddd]hhhhh	chr1:2326295-2326542(+)$1	247	97	112	20.0980
===bb"""bbooooo	chr9:139715781-139716021(+)$1	240	77	92	19.2156
HHHHHYYJJJJJJJJ	chr19:16187671-16187996(+)$1	325	94	109	19.4117
}BB}FFFFFF}A}DD	chr14:105715431-105715697(-)$1	266	217	232	17.9411
4444bb55555dddd	chr8:144679188-144679513(-)$1	325	48	63	18.7254
:ffffff[bb!!bbp	chr16:87730764-87731032(-)$1	268	19	34	19.2156
dd]dddd::::CCCC	chr22:50013912-50014185(-)$1	273	101	116	16.2745
2bbbbdddd[=====	chr16:75018775-75019059(-)$1	284	92	107	16.6666
hhhhhhh]bbccc]b	chr19:1206001-1206284(+)$1	283	94	109	18.6274
g22eeeeeffffff]	chr7:100732784-100733066(+)$1	282	100	115	18.4313
CCYYA}FFFFFF:::	chr22:19951898-19952165(+)$1	267	248	263	20.0000
iiiiii333ccc]cc	chr17:27404386-27404653(-)$1	267	109	124	17.3529
{A{CCCIIIIIIIII	chr1:36789201-36789461(+)$1	260	52	67	25.0980

#DB
...((((((((.(((	chr19:2270196-2270466(+)$1	1	29	44	19.4117
....)).))))((((	chr16:1741690-1741952(+)$1	1	88	103	26.0784
)).((..(((((.((	chr17:36955606-36955943(-)$1	1	40	55	22.4509
.(((((((((....(	chr2:202001766-202002064(+)$1	1	169	184	16.2745
(.(((((((((((((	chr2:191513878-191514187(+)$1	1	25	40	18.0392
)))).)))...((((	chr8:94753030-94753280(-)$1	1	218	233	20.9803
(((((((((((..((	chr20:62330389-62330646(-)$1	1	129	144	15.0000
.))))...))))...	chr1:2122238-2122504(-)$1	1	101	116	15.7843
(.(..(((......)	chr17:8378145-8378435(+)$1	1	115	130	18.8235
))...(((.((.(((	chr4:763952-764205(-)$1	1	99	114	17.3529
)))))))).))).))	chr7:1007846-1008163(-)$1	1	110	125	20.4901
..)))..(((((.((	chr19:13263806-13264052(+)$1	1	37	52	17.7450
..))))).)).))))	chr10:126848850-126849091(-)$1	1	219	234	20.9803
.)))..........(	chr1:155947809-155948086(-)$1	1	98	113	23.2352
))))))))...))))	chr17:62893384-62893718(-)$1	1	171	186	18.9215
.))))((((.(((((	chr1:245026251-245026534(-)$1	1	113	128	26.2745
))))))))))...((	chr12:104697385-104697719(+)$1	1	59	74	22.9411
)))))).)).)))))	chr3:195622702-195622958(-)$1	1	240	255	23.1372
))))).)))))))))	chr4:516178-516419(+)$1	1	99	114	16.5686
(((..(...((((..	chr11:74976691-74976945(-)$1	1	95	110	16.8627
((..(.((((((.((	chr19:18548014-18548297(-)$1	1	115	130	17.0588
)))))..)))).)))	chr9:139560083-139560354(+)$1	1	94	109	19.3137
(((((.........)	chr19:1104362-1104635(+)$1	1	68	83	21.8627
...)))))).))).)	chr19:2425971-2426224(-)$1	1	59	74	18.5294
..)))).)))).)))	chr12:125398765-125399053(-)$1	1	47	62	15.5882
(.....(((((((.(	chr19:42788109-42788379(+)$1	1	51	66	21.9607
))))).(((((((((	chr19:58991071-58991363(-)$1	1	240	255	26.8627
)))))))))))))))	chr16:87730996-87731258(-)$1	1	245	260	19.2156
(((((((((((....	chr19:1472446-1472699(-)$1	1	29	44	14.7058
........)).))))	chr19:50354287-50354570(-)$1	1	248	263	16.2745
.)..)))))))....	chr3:9851513-9851805(+)$1	1	54	69	16.5686
))))))))..)).))	chr21:46494359-46494614(+)$1	1	98	113	26.3725
)))...(((((((((	chr14:105715325-105715579(-)$1	1	99	114	17.9411
(((((.(.(((((.(	chr3:128211654-128211981(+)$1	1	184	199	20.5882
......))....)).	chr10:17271170-17271440(-)$1	1	89	104	15.7843
((....((.(((...	chr2:97535591-97535833(-)$1	1	38	53	16.4705
.((((((......((	chr8:144678741-144679003(-)$1	1	111	126	18.6274
)))))..)).(((((	chr7:2147098-2147404(-)$1	1	145	160	18.2352
.....)))).)))))	chr1:2326295-2326542(+)$1	1	97	112	20.0980
(((((...((.....	chr9:139715781-139716021(+)$1	1	77	92	19.2156
)))))..))))))))	chr19:16187671-16187996(+)$1	1	94	109	19.4117
.)).)))))).).))	chr14:105715431-105715697(-)$1	1	217	232	17.9411
....)).....))))	chr8:144679188-144679513(-)$1	1	48	63	18.7254
.((((((.((..((.	chr16:87730764-87731032(-)$1	1	19	34	19.2156
)).))))....((((	chr22:50013912-50014185(-)$1	1	101	116	16.2745
.))))((((.(((((	chr16:75018775-75019059(-)$1	1	92	107	16.6666
))))))).))))).)	chr19:1206001-1206284(+)$1	1	94	109	18.6274
)..))))))))))).	chr7:100732784-100733066(+)$1	1	100	115	18.4313
))..).))))))...	chr22:19951898-19952165(+)$1	1	248	263	20.0000
))))))...))).))	chr17:27404386-27404653(-)$1	1	109	124	17.3529
.(.((((((((((((	chr1:36789201-36789461(+)$1	1	52	67	25.0980

#PSSM
G : 0.66	g : 0.23	A : 0.05	U : 0.01	a : 0.01	
G : 0.52	g : 0.25	C : 0.09	U : 0.07	A : 0.03	
G : 0.56	g : 0.23	C : 0.07	A : 0.07	U : 0.03	
G : 0.49	g : 0.13	C : 0.13	A : 0.11	c : 0.05	u : 0.01	a : 0.01	U : 0.01	
C : 0.37	U : 0.33	c : 0.11	u : 0.05	a : 0.05	A : 0.05	
G : 0.66	g : 0.23	C : 0.05	U : 0.03	
G : 0.64	g : 0.23	U : 0.05	A : 0.03	C : 0.01	
G : 0.66	g : 0.23	A : 0.07	C : 0.01	
G : 0.70	g : 0.19	C : 0.05	c : 0.03	
U : 0.47	A : 0.15	C : 0.11	u : 0.07	c : 0.07	a : 0.05	g : 0.01	G : 0.01	
G : 0.64	g : 0.23	C : 0.05	c : 0.01	U : 0.01	a : 0.01	
G : 0.62	g : 0.25	U : 0.07	c : 0.01	C : 0.01	
G : 0.56	g : 0.27	C : 0.07	A : 0.05	U : 0.01	
G : 0.52	g : 0.27	C : 0.11	U : 0.03	A : 0.03	
G : 0.31	A : 0.15	C : 0.13	g : 0.13	U : 0.11	c : 0.07	u : 0.03	a : 0.01	

#score	986.3725490196084
#seq	51
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_transcript_m3_run1.nuc.txt

#NT
cgaggaaga	chr17:18965256-18965544(+)$1	288	46	55	13.3888
ugaggaaga	chr14:102551150-102551433(-)$1	283	226	235	17.0000
UGGGGAAGA	chr11:65192486-65192724(+)$1	238	227	236	13.3888
agaagaaga	chr4:174252984-174253324(-)$1	340	8	17	14.5000
UGUCAAAAA	chr9:100777544-100777870(+)$1	326	9	18	10.8888
UGAAGAAGA	chr2:232325435-232325678(-)$1	243	105	114	17.5555
UCACAAAGA	chr20:17943256-17943502(-)$1	246	119	128	15.0555
UCACAAAGA	chr20:17943321-17943552(-)$1	231	169	178	15.0555
ugacgaaga	chr2:232326150-232326374(-)$1	224	83	92	18.9444
ugaagaaga	chr2:99992833-99993115(+)$1	282	64	73	17.5555
UGUCAAAGA	chr2:232325089-232325328(-)$1	239	57	66	15.3333
ugacgaaga	chr2:232326226-232326502(-)$1	276	211	220	18.9444
ugacaaagg	chr6:31958180-31958383(+)$1	203	151	160	13.9444
agacgaaga	chr12:104341071-104341309(+)$1	238	82	91	15.8888
agaagaaga	chr4:174253124-174253379(-)$1	255	63	72	14.5000
UGAAAAAGA	chr12:104341310-104341525(+)$1	215	111	120	17.0000
UGUCAAAGA	chr2:232325128-232325375(-)$1	247	104	113	15.3333

#otherMatches

#Struct PSSM
ennnnneee	chr20:17943302-17943521(-)$1	219	138	147	15.0555
DDffffff"	chr17:18965256-18965544(+)$1	288	46	55	13.3888
g::::::::	chr14:102551150-102551433(-)$1	283	226	235	17.0000
ddd]dddd:	chr11:65192486-65192724(+)$1	238	227	236	13.3888
vvvvvvvvv	chr4:174252984-174253324(-)$1	340	8	17	14.5000
EEEEE::::	chr9:100777544-100777870(+)$1	326	9	18	10.8888
cnnnnnccc	chr2:232325435-232325678(-)$1	243	105	114	17.5555
eee777777	chr20:17943256-17943502(-)$1	246	119	128	15.0555
ennnnneee	chr20:17943321-17943552(-)$1	231	169	178	15.0555
"""bb!!cc	chr2:232326150-232326374(-)$1	224	83	92	18.9444
:::::::::	chr2:99992833-99993115(+)$1	282	64	73	17.5555
C{A::::::	chr2:232325089-232325328(-)$1	239	57	66	15.3333
:::::::cc	chr2:232326226-232326502(-)$1	276	211	220	18.9444
ggHHHHHHH	chr6:31958180-31958383(+)$1	203	151	160	13.9444
eeee$$$$$	chr12:104341071-104341309(+)$1	238	82	91	15.8888
:::::::::	chr4:174253124-174253379(-)$1	255	63	72	14.5000
b[ggggggg	chr12:104341310-104341525(+)$1	215	111	120	17.0000
C{A::::::	chr2:232325128-232325375(-)$1	247	104	113	15.3333

#DB
(.....)))	chr20:17943302-17943521(-)$1	1	138	147	15.0555
((((((((.	chr17:18965256-18965544(+)$1	1	46	55	13.3888
)........	chr14:102551150-102551433(-)$1	1	226	235	17.0000
))).)))).	chr11:65192486-65192724(+)$1	1	227	236	13.3888
.........	chr4:174252984-174253324(-)$1	1	8	17	14.5000
(((((....	chr9:100777544-100777870(+)$1	1	9	18	10.8888
(.....)))	chr2:232325435-232325678(-)$1	1	105	114	17.5555
)))......	chr20:17943256-17943502(-)$1	1	119	128	15.0555
(.....)))	chr20:17943321-17943552(-)$1	1	169	178	15.0555
...((..((	chr2:232326150-232326374(-)$1	1	83	92	18.9444
.........	chr2:99992833-99993115(+)$1	1	64	73	17.5555
(.(......	chr2:232325089-232325328(-)$1	1	57	66	15.3333
.......((	chr2:232326226-232326502(-)$1	1	211	220	18.9444
)))))))))	chr6:31958180-31958383(+)$1	1	151	160	13.9444
((((.....	chr12:104341071-104341309(+)$1	1	82	91	15.8888
.........	chr4:174253124-174253379(-)$1	1	63	72	14.5000
(.(((((((	chr12:104341310-104341525(+)$1	1	111	120	17.0000
(.(......	chr2:232325128-232325375(-)$1	1	104	113	15.3333

#PSSM
U : 0.50	u : 0.27	a : 0.16	c : 0.05	
g : 0.50	G : 0.33	C : 0.16	
a : 0.50	A : 0.27	U : 0.16	G : 0.05	
C : 0.33	c : 0.22	a : 0.16	g : 0.11	A : 0.11	G : 0.05	
g : 0.44	A : 0.38	G : 0.11	a : 0.05	
A : 0.50	a : 0.50	
A : 0.50	a : 0.50	
g : 0.50	G : 0.44	A : 0.05	
A : 0.50	a : 0.44	g : 0.05	

#score	279.3333333333334
#seq	18
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_transcript_m1_run2.nuc.txt

#NT
Uguguguguuugcgcgcgugcgugcgugcgug	chr6:41554424-41554729(+)$1	305	90	122	52.5957
gguguguguguguguguguguccuugcgggug	chr17:79964028-79964237(+)$1	209	58	90	57.7021
ugggugugggugugcaugugggugugggugug	chr19:18881637-18881927(+)$1	290	3	35	55.0425
uuugugugugugugugugccugugugugggug	chr16:89980847-89981104(+)$1	257	158	190	61.7446
ugugugugucuguguguuggugugugucuguu	chr17:15368351-15368657(-)$1	306	105	137	57.0638
ugugugugugugugugugugugugugugCAUG	chr20:62653095-62653516(+)$1	421	246	278	71.5319
uguguguauauaugugugugugugcguguguc	chr20:43033361-43033624(+)$1	263	40	72	58.0212
gguguguguguguguguguguccuugcgggug	chr17:79963995-79964228(+)$1	233	91	123	57.7021
ugugugcaugggugugugugugugugcaugug	chr17:70550101-70550356(-)$1	255	120	152	58.6595
ugugugugugugugugugugugggugugugug	chrX:132789353-132789643(-)$1	290	87	119	75.2553
ugugagugagugugugagugacugugugugug	chr6:16760076-16760364(-)$1	288	105	137	58.5531
uguguguaugugauuguaugugugugugugug	chr17:7016444-7016717(-)$1	273	74	106	62.8085
ugcgugugugugugugugugugugugugugug	chr10:103590366-103590639(-)$1	273	169	201	74.7234
Cgugugugugugugugugugugugugggugug	chr17:70535143-70535432(-)$1	289	103	135	71.1063
ugugugugugugugugugugugugugugugug	chr11:93454810-93455088(+)$1	278	22	54	78.9787
ugugugugugugugugugugugugugugugug	chr12:56991292-56991567(-)$1	275	109	141	78.9787
ugugugugugugccugugugugugugccugug	chr16:89981293-89981540(+)$1	247	4	36	63.3404
CGAGUGUGAGGgugugugugugugcaugugug	chr17:70550320-70550592(-)$1	272	57	89	54.4042
uguguguguaugcaugugugguggugugugug	chr17:7010904-7011195(-)$1	291	252	284	55.2553
uguguguguguguguguguguguguuugugug	chr3:32871034-32871300(+)$1	266	84	116	74.6170
uguguguguaugugcagaugggugugugugug	chr9:136719084-136719331(-)$1	247	153	185	55.2553
gguguguguguguguguguguccuugcgggug	chr17:79964082-79964335(+)$1	253	4	36	57.7021
ugugugugugugugugugugugccugugugug	chr1:2173272-2173592(+)$1	320	116	148	71.3191
Ggugugugugugugugugugugugucugcgug	chr19:944238-944535(+)$1	297	86	118	68.1276
ugugugugugugugugugugugugugugugug	chr2:135208253-135208536(+)$1	283	102	134	78.9787
ugugugugugugugugugugugugugugcgug	chr13:76054947-76055305(-)$1	358	264	296	75.8936
ugugugugugugugcgugugugugugugugug	chr11:65196798-65197039(+)$1	241	155	187	75.7872
ugaguguaugugugcgugcgugugugugagug	chr2:241901052-241901331(-)$1	279	69	101	59.7234
ugugugugugugugugugugugugugugugug	chr19:11664178-11664514(-)$1	336	68	100	78.9787
ugugugugugugugugugugugugugugcgug	chr13:76054872-76055123(-)$1	251	82	114	75.8936
uguguguguaggaguguguguguguguguguA	chr17:7077792-7078045(-)$1	253	83	115	62.2765
ugugugugugugugugugugugugugugugug	chr11:65211699-65211906(+)$1	207	35	67	78.9787
ugugagugcguguaugaguguggguguuugug	chr7:157612960-157613252(-)$1	292	67	99	54.4042
ugugugugugugugcgugugugugugugugug	chr11:65196853-65197095(+)$1	242	100	132	75.7872
ugagugagugagugagugUGAGCGUGUGUGUG	chr13:26828212-26828513(+)$1	301	108	140	54.8297
ugugugugugucuguauguguguacgugugug	chr16:75269810-75270079(-)$1	269	79	111	61.8510
UGUAGGGAugugugugugugugugugugugug	chr16:81712642-81712899(+)$1	257	208	240	61.3191
ugugugugugugugugcauguaugcaugugug	chr19:2336731-2336981(+)$1	250	167	199	58.7659
Gguguguguguguguguguguguguguaugug	chr3:5025399-5025693(+)$1	294	114	146	71.3191
ugugugugggugagggcgugugugugugcaug	chr20:62363597-62363899(+)$1	302	26	58	55.5744
ugggugugugugucugagugugugucugugag	chr17:7079127-7079372(-)$1	245	212	244	57.7021
ugugugagugugugagugugugugaguuugug	chr17:7012976-7013255(-)$1	279	224	256	62.4893
gguguguguguguguguguguccuugcgggug	chr17:79963911-79964122(+)$1	211	175	207	57.7021
ugugcgugugugcauguauguguguguguaug	chr4:23796920-23797185(-)$1	265	29	61	58.2340
ugugugugugugugugugugugugugugugug	chr16:50657549-50657829(+)$1	280	87	119	78.9787
ugugugugugugugugugugugugugugugug	chr11:93454718-93454992(+)$1	274	114	146	78.9787

#otherMatches

#Struct PSSM
]dddd::DDDD{EEEEE::eeeee[ccc[bb"	chr11:65196895-65197126(+)$1	231	58	90	75.7872
eeeffffff[gggggggooooooggggggg]f	chr6:41554424-41554729(+)$1	305	90	122	52.5957
]bb]eeeee::::::::dddd[hhhhhhhh[=	chr17:79964028-79964237(+)$1	209	58	90	57.7021
:::::::=============[===========	chr19:18881637-18881927(+)$1	290	3	35	55.0425
huuuuuuuuuuuuhhhhhhhh::::::=====	chr16:89980847-89981104(+)$1	257	158	190	61.7446
::::::::::::::::::::::::::::::::	chr17:15368351-15368657(-)$1	306	105	137	57.0638
eeeedddd!!bb[===============mmmm	chr20:62653095-62653516(+)$1	421	246	278	71.5319
III::hhhhhhhhmmmmhhhhhhhh::::ddd	chr20:43033361-43033624(+)$1	263	40	72	58.0212
}BB}AYYJJJJJJJJJJJJJJJhhhhhhhh[=	chr17:79963995-79964228(+)$1	233	91	123	57.7021
==========[aooooooa]===========]	chr17:70550101-70550356(-)$1	255	120	152	58.6595
nnbb22a]ffffff:A{BB{EEEEE{BB{DDD	chrX:132789353-132789643(-)$1	290	87	119	75.2553
D:::ccc[a[annnnna]a]ccc=========	chr6:16760076-16760364(-)$1	288	105	137	58.5531
:::::eeeeemmmmeeeee:::::::::::::	chr17:7016444-7016717(-)$1	273	74	106	62.8085
====^^^^^^^^^^^^^^^^^^^^========	chr10:103590366-103590639(-)$1	273	169	201	74.7234
boooooobb]a]eeeee]ccc]a22dddd]a2	chr17:70535143-70535432(-)$1	289	103	135	71.1063
44cccBBKKCCC{GGGGGGG:iiiiiiiiimm	chr11:93454810-93455088(+)$1	278	22	54	78.9787
^^^^^^^^^^^^^^^^^^^dddd333a]a]bb	chr12:56991292-56991567(-)$1	275	109	141	78.9787
:::::::::EEEEE{BB::=========='''	chr16:89981293-89981540(+)$1	247	4	36	63.3404
hhhh22a]eeeeeggggggg]bb=========	chr17:70550320-70550592(-)$1	272	57	89	54.4042
rrrrrrrr============::::::::::::	chr17:7010904-7011195(-)$1	291	252	284	55.2553
ooddddccc22dddd333bb]ffffff22bb]	chr3:32871034-32871300(+)$1	266	84	116	74.6170
&&&&&===========[ccc[ffffffooooo	chr9:136719084-136719331(-)$1	247	153	185	55.2553
oooooodddd:::hhhhhhhh[hhhhhhhh[=	chr17:79964082-79964335(+)$1	253	4	36	57.7021
^^^^^^^^^^^^^^^a]ffffff]bb]a333f	chr1:2173272-2173592(+)$1	320	116	148	71.3191
fff::::::CCC{EEEEE{DDDD{DDDD{ADD	chr19:944238-944535(+)$1	297	86	118	68.1276
}BB}BB}A}A}DDDD}A}DDDD}CCC}DDDD:	chr2:135208253-135208536(+)$1	283	102	134	78.9787
=======:BB}FFFFFF}DDDD}A}JJJJJJJ	chr13:76054947-76055305(-)$1	358	264	296	75.8936
]dddd::::::eeeee^^^^^^^^^^^^^^^^	chr11:65196798-65197039(+)$1	241	155	187	75.7872
e::::a[=====================####	chr2:241901052-241901331(-)$1	279	69	101	59.7234
oooooa22dddd::::::::::::::::::::	chr19:11664178-11664514(-)$1	336	68	100	78.9787
::::DDDD{DDDDLLLDDDDLLLCCCDDDDee	chr13:76054872-76055123(-)$1	251	82	114	75.8936
TTTTTTTTTTDDDD{A{A{EEEEE{AMMMMFF	chr17:7077792-7078045(-)$1	253	83	115	62.2765
nnnnnbb]bb::::::::::::::::::::::	chr11:65211699-65211906(+)$1	207	35	67	78.9787
:::::::HHHHHHHH:::::::::::::::::	chr7:157612960-157613252(-)$1	292	67	99	54.4042
]dddd::DDDD{EEEEE::eeeee[ccc[bb"	chr11:65196853-65197095(+)$1	242	100	132	75.7872
bdddd22bb::CCC{A{A{EEEEE{DDDD{A:	chr13:26828212-26828513(+)$1	301	108	140	54.8297
::DDDD{BB{CCC{FFFFFF{CCC{CCC::::	chr16:75269810-75270079(-)$1	269	79	111	61.8510
EEEE}AYYA}BB::::::::ccc[gggggggn	chr16:81712642-81712899(+)$1	257	208	240	61.3191
fff::::::::::JJJJJJJJJJJJJJJJJJJ	chr19:2336731-2336981(+)$1	250	167	199	58.7659
EEEEE::::::::::::::::==========o	chr3:5025399-5025693(+)$1	294	114	146	71.3191
hhhh::EEEEE::a[ffffffoooooofffff	chr20:62363597-62363899(+)$1	302	26	58	55.5744
cc]ccc:::::::DDDD?????A}BB::::::	chr17:7079127-7079372(-)$1	245	212	244	57.7021
>>>>>>>>>>>>>>>>>>>>>>>>>ffffff2	chr17:7012976-7013255(-)$1	279	224	256	62.4893
}BB}A~~~~JJJJJJJJJJJJ}HHHHHHHH}D	chr17:79963911-79964122(+)$1	211	175	207	57.7021
:ddddooooooddddJJJJJJJJJJJJJJJJJ	chr4:23796920-23797185(-)$1	265	29	61	58.2340
ggg!!eeeee[eeeee!!eeeee[========	chr16:50657549-50657829(+)$1	280	87	119	78.9787
fffff]a333ccc7777777ccchhhhhhhhm	chr11:93454718-93454992(+)$1	274	114	146	78.9787

#DB
.))))..((((.(((((..(((((.(((.((.	chr11:65196895-65197126(+)$1	1	58	90	75.7872
)))((((((.(((((((......))))))).)	chr6:41554424-41554729(+)$1	1	90	122	52.5957
.)).)))))........((((.((((((((.(	chr17:79964028-79964237(+)$1	1	58	90	57.7021
.......(((((((((((((.(((((((((((	chr19:18881637-18881927(+)$1	1	3	35	55.0425
(............))))))))......(((((	chr16:89980847-89981104(+)$1	1	158	190	61.7446
................................	chr17:15368351-15368657(-)$1	1	105	137	57.0638
))))((((..((.(((((((((((((((....	chr20:62653095-62653516(+)$1	1	246	278	71.5319
(((..((((((((....))))))))....(((	chr20:43033361-43033624(+)$1	1	40	72	58.0212
.)).)..)))))))))))))))((((((((.(	chr17:79963995-79964228(+)$1	1	91	123	57.7021
((((((((((.(......).))))))))))).	chr17:70550101-70550356(-)$1	1	120	152	58.6595
..))..).)))))).(.((.(((((.((.(((	chrX:132789353-132789643(-)$1	1	87	119	75.2553
(...(((.(.(.....).).)))(((((((((	chr6:16760076-16760364(-)$1	1	105	137	58.5531
.....(((((....))))).............	chr17:7016444-7016717(-)$1	1	74	106	62.8085
((((....................))))))))	chr10:103590366-103590639(-)$1	1	169	201	74.7234
(......)).).))))).))).)..)))).).	chr17:70535143-70535432(-)$1	1	103	135	71.1063
..)))((..(((.(((((((.(((((((((..	chr11:93454810-93455088(+)$1	1	22	54	78.9787
...................))))...).).))	chr12:56991292-56991567(-)$1	1	109	141	78.9787
.........(((((.((..((((((((((...	chr16:89981293-89981540(+)$1	1	4	36	63.3404
))))..).)))))))))))).))(((((((((	chr17:70550320-70550592(-)$1	1	57	89	54.4042
........))))))))))))............	chr17:7010904-7011195(-)$1	1	252	284	55.2553
..)))))))..))))...)).))))))..)).	chr3:32871034-32871300(+)$1	1	84	116	74.6170
.....(((((((((((.(((.((((((.....	chr9:136719084-136719331(-)$1	1	153	185	55.2553
......))))...((((((((.((((((((.(	chr17:79964082-79964335(+)$1	1	4	36	57.7021
...............).)))))).)).)...)	chr1:2173272-2173592(+)$1	1	116	148	71.3191
)))......(((.(((((.((((.((((.(((	chr19:944238-944535(+)$1	1	86	118	68.1276
.)).)).).).)))).).)))).))).)))).	chr2:135208253-135208536(+)$1	1	102	134	78.9787
))))))).)).)))))).)))).).)))))))	chr13:76054947-76055305(-)$1	1	264	296	75.8936
.))))......(((((................	chr11:65196798-65197039(+)$1	1	155	187	75.7872
)....(.(((((((((((((((((((((....	chr2:241901052-241901331(-)$1	1	69	101	59.7234
.....)..))))....................	chr19:11664178-11664514(-)$1	1	68	100	78.9787
....((((.((((...((((...(((((((((	chr13:76054872-76055123(-)$1	1	82	114	75.8936
..........((((.(.(.(((((.(....((	chr17:7077792-7078045(-)$1	1	83	115	62.2765
.....)).))......................	chr11:65211699-65211906(+)$1	1	35	67	78.9787
.......((((((((.................	chr7:157612960-157613252(-)$1	1	67	99	54.4042
.))))..((((.(((((..(((((.(((.((.	chr11:65196853-65197095(+)$1	1	100	132	75.7872
)))))..))..(((.(.(.(((((.((((.(.	chr13:26828212-26828513(+)$1	1	108	140	54.8297
..((((.((.(((.((((((.(((.(((....	chr16:75269810-75270079(-)$1	1	79	111	61.8510
)))).)..).))........(((.(((((((.	chr16:81712642-81712899(+)$1	1	208	240	61.3191
)))..........)))))))))))))))))))	chr19:2336731-2336981(+)$1	1	167	199	58.7659
(((((................((((((((((.	chr3:5025399-5025693(+)$1	1	114	146	71.3191
))))..(((((..(.((((((......)))))	chr20:62363597-62363899(+)$1	1	26	58	55.5744
)).))).......)))).....).))......	chr17:7079127-7079372(-)$1	1	212	244	57.7021
.........................)))))).	chr17:7012976-7013255(-)$1	1	224	256	62.4893
.)).)....)))))))))))).)))))))).)	chr17:79963911-79964122(+)$1	1	175	207	57.7021
.((((......))))(((((((((((((((((	chr4:23796920-23797185(-)$1	1	29	61	58.2340
(((..(((((.(((((..(((((.((((((((	chr16:50657549-50657829(+)$1	1	87	119	78.9787
))))).)...))).......)))((((((((.	chr11:93454718-93454992(+)$1	1	114	146	78.9787

#PSSM
u : 0.78	g : 0.08	U : 0.04	C : 0.04	G : 0.04	
g : 0.93	G : 0.04	u : 0.02	
u : 0.85	g : 0.04	a : 0.04	c : 0.02	A : 0.02	U : 0.02	
g : 0.95	G : 0.02	A : 0.02	
u : 0.89	a : 0.04	U : 0.02	G : 0.02	c : 0.02	
g : 0.95	G : 0.04	
u : 0.89	a : 0.04	c : 0.02	U : 0.02	G : 0.02	
g : 0.87	a : 0.08	G : 0.02	A : 0.02	
u : 0.89	g : 0.04	a : 0.02	A : 0.02	c : 0.02	
g : 0.85	a : 0.08	u : 0.02	c : 0.02	G : 0.02	
u : 0.91	g : 0.04	G : 0.02	a : 0.02	
g : 0.95	a : 0.02	c : 0.02	
u : 0.85	c : 0.08	a : 0.06	
g : 0.87	a : 0.06	c : 0.04	u : 0.02	
u : 0.78	c : 0.14	a : 0.04	g : 0.02	
g : 0.93	a : 0.06	
u : 0.85	c : 0.06	a : 0.06	g : 0.02	
g : 0.89	a : 0.08	u : 0.02	
u : 0.91	c : 0.04	g : 0.02	U : 0.02	
g : 0.95	c : 0.02	G : 0.02	
u : 0.87	g : 0.06	c : 0.02	a : 0.02	A : 0.02	
g : 0.82	c : 0.10	u : 0.02	G : 0.02	a : 0.02	
u : 0.80	c : 0.10	g : 0.06	C : 0.02	
g : 0.85	u : 0.08	c : 0.02	G : 0.02	a : 0.02	
u : 0.85	c : 0.10	U : 0.02	a : 0.02	
g : 0.87	a : 0.04	c : 0.04	u : 0.02	G : 0.02	
u : 0.80	c : 0.12	g : 0.04	U : 0.02	
g : 0.85	c : 0.04	a : 0.04	u : 0.04	G : 0.02	
u : 0.72	c : 0.10	g : 0.10	C : 0.02	a : 0.02	U : 0.02	
g : 0.91	a : 0.04	A : 0.02	G : 0.02	
u : 0.93	U : 0.04	a : 0.02	
g : 0.89	G : 0.04	u : 0.02	c : 0.02	A : 0.02	

#score	3080.723404255322
#seq	47
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_UTR_m1_run1.nuc.txt

#NT
ccccggccccccccacccccucc	chr1:2241207-2241482(+)$1	275	6	29	24.2727
Gcccuuccucccucuuucuuucc	chr20:251510-251775(-)$1	265	50	73	27.0909
ccccucccugccucccuucuucc	chr16:69733952-69734244(+)$1	292	54	77	33.2727
ucccuccauccuucuuuccuuca	chrX:133930376-133930615(-)$1	239	80	103	25.4545
ccacucccucccucuuuguuucc	chrX:56592317-56592543(+)$1	226	88	111	27.2727
ccccuccccgccccucuccccac	chr20:62153249-62153500(+)$1	251	35	58	27.2727
ccccggccucccgcccuuccccu	chr12:53846055-53846261(+)$1	206	38	61	25.2727
CACCUCCCCACCUCCCUCCCCCG	chr19:50161702-50161989(+)$1	287	13	36	26.7272
ccccaccaccccaccaccccucc	chr16:30675665-30675938(+)$1	273	58	81	23.9090
cuccuccuucccgcuuuuccccu	chr11:66010846-66011124(+)$1	278	102	125	25.8181
ccccucccucccucccucccuuc	chrX:122735192-122735424(-)$1	232	67	90	37.7272
uccuuccuucccuguuuccuucc	chr22:35690691-35690988(+)$1	297	109	132	24.5454
ccuucccuucucuccuucccucu	chr11:73685698-73685998(-)$1	300	31	54	21.6363
ccccucccugccucccuucuucc	chr16:69733920-69734152(+)$1	232	86	109	33.2727
cuccucccuccccucugcccucu	chrX:133930482-133930754(-)$1	272	67	90	27.6363
ccccucccucccucccucccuuc	chrX:122735164-122735392(-)$1	228	35	58	37.7272
ccccucccucccuccccuccccu	chr19:35759900-35760167(+)$1	267	36	59	33.9090
uuucucccucccuccuucccucG	chr5:112929774-112930106(+)$1	332	166	189	29.0909
CCCCUCUCUGCCUGCCUCCUCCU	chr1:153923955-153924222(-)$1	267	189	212	24.3636
CCUCUcccgcccgcccgcccucc	chr12:53845903-53846181(+)$1	278	26	49	28.4545
cuccuccauuccucucucccugc	chr19:56671810-56672084(+)$1	274	82	105	27.0000
ccccuuccuccuccuccuccucc	chr12:53845993-53846218(+)$1	225	9	32	26.1818
ccccccccucccacucccccucc	chr3:185348981-185349287(+)$1	306	234	257	32.4545
cccagcccucgcucucucgcucg	chr2:172016818-172017096(-)$1	278	38	61	22.0909
ccacucccucccucuuuguuucc	chrX:56592276-56592517(+)$1	241	129	152	27.2727
gcccccucuccuuccuccccccu	chr2:48132736-48133034(-)$1	298	57	80	21.0000
ccacucccucgcucccucccucA	chr1:27633884-27634183(+)$1	299	211	234	30.6363
ccccucccucccucuuucccucu	chrX:109417584-109417834(+)$1	250	22	45	39.8181
CCCCACCCCGCCUGCCGCCCCCU	chr19:18642478-18642745(-)$1	267	102	125	22.0000
ccccuccccccacccuccccuca	chrX:53263350-53263626(-)$1	276	73	96	27.7272
ccccucccuucuccuuccccucc	chr4:726033-726340(+)$1	307	114	137	29.5454
AGCCUcccucccucuucucuccu	chr9:132900673-132901068(+)$1	395	5	28	24.0000
ccccacccuccccauccuccucu	chr1:227179468-227179769(-)$1	301	97	120	25.5454
ccccggccucccgcccuuccccu	chr12:53846023-53846230(+)$1	207	70	93	25.2727
ccucucccucccccucucccugc	chr19:57742903-57743238(+)$1	335	33	56	31.6363
CCCUUCCCUCCACCUCUCCUUAC	chr1:205759028-205759303(-)$1	275	112	135	24.5454
gccuuccuuuccucuuuccuccu	chr17:8063730-8064002(-)$1	272	221	244	22.0000
cgccucccucccucccuccccgc	chr1:1250890-1251176(-)$1	286	5	28	31.9090
UCCCUUCCUCCGCCUUCCUCUCC	chr19:41829443-41829714(+)$1	271	113	136	21.5454
ccccucccccacugcccccuccc	chr17:7154739-7154990(-)$1	251	21	44	23.8181
auccuccuucccuccuccucucc	chrX:133930201-133930461(-)$1	260	34	57	25.4545
ccccucccucccucccucccuuc	chrX:122735101-122735364(-)$1	263	7	30	37.7272
ucccucccucccuccuucccucc	chr12:65089790-65090101(+)$1	311	97	120	38.3636
CCCCUCCCCUCCUCCUUCCUUCC	chr11:203837-204060(-)$1	223	89	112	32.8181
ccccccccuuccucuuuuccAUU	chr5:141693069-141693405(-)$1	336	8	31	24.0909
uuccucccugccucuuuccuucc	chr2:240898913-240899174(-)$1	261	44	67	29.0909
UCUUUCCCUCCCUCCCUCCCACC	chr15:56535239-56535517(-)$1	278	0	23	28.3636
CCUCCCCGCCCCCCCUUUCCUCC	chr3:47454302-47454586(+)$1	284	89	112	23.1818
GCUCUCCGCCCCUCCUUGCCUCC	chr6:30654175-30654449(-)$1	274	105	128	24.7272
acccuccugcccccucucccacu	chr19:14203530-14203758(-)$1	228	41	64	25.0909
cucuucccucccuucgucccuuc	chr20:47804552-47804849(-)$1	297	85	108	24.2727
UGCCUCCCUUCCUCCGCUCCCCU	chr1:160328138-160328463(+)$1	325	91	114	21.9090
ccccucccucccucuuucccucu	chrX:109417506-109417784(+)$1	278	100	123	39.8181
acccuccugcccccucucccacu	chr19:14203465-14203730(-)$1	265	13	36	25.0909

#otherMatches

#Struct PSSM
:::::::::BBKKGGGGGGG:::	chr5:61602141-61602416(+)$1	275	90	113	21.9090
nnnccc:::::::::::::EEEE	chr1:2241207-2241482(+)$1	275	6	29	24.2727
bb::::::::::BBNNNNNEEEE	chr20:251510-251775(-)$1	265	50	73	27.0909
:::annnnna:::::GGGGGGG:	chr16:69733952-69734244(+)$1	292	54	77	33.2727
:::::::::::::::::::::::	chrX:133930376-133930615(-)$1	239	80	103	25.4545
::::dddd[bbccc^^^^^^^^^	chrX:56592317-56592543(+)$1	226	88	111	27.2727
c]eeeeea]ccc:::::::::::	chr20:62153249-62153500(+)$1	251	35	58	27.2727
::::cccnnnnnccc::::::::	chr12:53846055-53846261(+)$1	206	38	61	25.2727
CCC::::::::::iiiiiiiiid	chr19:50161702-50161989(+)$1	287	13	36	26.7272
HHKKCCC{DDDD{BBEEEEE:::	chr16:30675665-30675938(+)$1	273	58	81	23.9090
wwwwwwwwwwwwccc::::::::	chr11:66010846-66011124(+)$1	278	102	125	25.8181
:::::::::::::::::::::::	chrX:122735192-122735424(-)$1	232	67	90	37.7272
::::::::::::::::::::::G	chr22:35690691-35690988(+)$1	297	109	132	24.5454
:::::::::::::::::::::::	chr11:73685698-73685998(-)$1	300	31	54	21.6363
:::::::::::::::::::::::	chr16:69733920-69734152(+)$1	232	86	109	33.2727
:::::::::::::::::::::::	chrX:133930482-133930754(-)$1	272	67	90	27.6363
:::::::::::::::::::::::	chrX:122735164-122735392(-)$1	228	35	58	37.7272
^^^^^^^^^^^^^^^^^^^^^^^	chr19:35759900-35760167(+)$1	267	36	59	33.9090
HHHH:::::::::::::::::::	chr5:112929774-112930106(+)$1	332	166	189	29.0909
EEEEE::::bb!!cccqqqqqqq	chr1:153923955-153924222(-)$1	267	189	212	24.3636
2bbdddd]bb::bb!!bbnnnnn	chr12:53845903-53846181(+)$1	278	26	49	28.4545
#dddd####eeeee"""bbdddd	chr19:56671810-56672084(+)$1	274	82	105	27.0000
:::::::::::::::::::::::	chr12:53845993-53846218(+)$1	225	9	32	26.1818
e]a22a22bb]eeeeebb:::::	chr3:185348981-185349287(+)$1	306	234	257	32.4545
::DDDD::::bboooooobb:cc	chr2:172016818-172017096(-)$1	278	38	61	22.0909
ffffff^^^^^^^^^^^^^^^^^	chrX:56592276-56592517(+)$1	241	129	152	27.2727
FFFLLLEEEEE::::::::::::	chr2:48132736-48133034(-)$1	298	57	80	21.0000
ff[dddd"""ccc!!ccc####d	chr1:27633884-27634183(+)$1	299	211	234	30.6363
b"""cccccc!!dddd[dddd$$	chrX:109417584-109417834(+)$1	250	22	45	39.8181
h::::::::eeeee!!bbnnnnn	chr19:18642478-18642745(-)$1	267	102	125	22.0000
MMMFFFFFFKKBBKKCCCPPPPP	chrX:53263350-53263626(-)$1	276	73	96	27.7272
hhhhh####ffffff"""ggggg	chr4:726033-726340(+)$1	307	114	137	29.5454
FFFFFMMMMCCC:::::::::EE	chr9:132900673-132901068(+)$1	395	5	28	24.0000
::::::::::::FFFFFF=====	chr1:227179468-227179769(-)$1	301	97	120	25.5454
::::cccnnnnnccc::::::::	chr12:53846023-53846230(+)$1	207	70	93	25.2727
:::::::::::::::::::::::	chr19:57742903-57743238(+)$1	335	33	56	31.6363
^^^^^^^^^^^^^^^^^^^^^^^	chr1:205759028-205759303(-)$1	275	112	135	24.5454
byyyyyyyyyyyyyyyybb>>>>	chr17:8063730-8064002(-)$1	272	221	244	22.0000
FFFNNNNNBBTTTTTTTTTTTGG	chr1:1250890-1251176(-)$1	286	5	28	31.9090
::::::::::::::::::::GGG	chr19:41829443-41829714(+)$1	271	113	136	21.5454
:::::::::CCC{BB::::::::	chr17:7154739-7154990(-)$1	251	21	44	23.8181
:::::::::::CCC{CCC{DDDD	chrX:133930201-133930461(-)$1	260	34	57	25.4545
:::::::::::::::::::::::	chrX:122735101-122735364(-)$1	263	7	30	37.7272
WWWWWWWWWGGGGGGGLLLCCC{	chr12:65089790-65090101(+)$1	311	97	120	38.3636
^^^^^^^^^^^^^^^^^^^^^^^	chr11:203837-204060(-)$1	223	89	112	32.8181
::::::BB{FFFFFF{CCCNNNN	chr5:141693069-141693405(-)$1	336	8	31	24.0909
DDD::::::ccc[ccc!!ccc!!	chr2:240898913-240899174(-)$1	261	44	67	29.0909
::FFFFFF{CCCBBJJJJJJJJJ	chr15:56535239-56535517(-)$1	278	0	23	28.3636
:::::::::::::::::::::::	chr3:47454302-47454586(+)$1	284	89	112	23.1818
bbnnnnnbb::CCCYYCCCYYFF	chr6:30654175-30654449(-)$1	274	105	128	24.7272
^^^^^^ccc22ffffff::::::	chr19:14203530-14203758(-)$1	228	41	64	25.0909
GGGKKBBDDDD{HHHHHHHH:::	chr20:47804552-47804849(-)$1	297	85	108	24.2727
c22ffffffbbaggggggg::::	chr1:160328138-160328463(+)$1	325	91	114	21.9090
$$bb"""ccc!!dddd[dddd$$	chrX:109417506-109417784(+)$1	278	100	123	39.8181
:::::::::::::::::::::::	chr19:14203465-14203730(-)$1	265	13	36	25.0909

#DB
.........((..(((((((...	chr5:61602141-61602416(+)$1	1	90	113	21.9090
...))).............((((	chr1:2241207-2241482(+)$1	1	6	29	24.2727
))..........((.....((((	chr20:251510-251775(-)$1	1	50	73	27.0909
...(.....).....))))))).	chr16:69733952-69734244(+)$1	1	54	77	33.2727
.......................	chrX:133930376-133930615(-)$1	1	80	103	25.4545
....((((.(((((.........	chrX:56592317-56592543(+)$1	1	88	111	27.2727
).)))))).)))...........	chr20:62153249-62153500(+)$1	1	35	58	27.2727
....(((.....)))........	chr12:53846055-53846261(+)$1	1	38	61	25.2727
(((..........((((((((((	chr19:50161702-50161989(+)$1	1	13	36	26.7272
((..(((.((((.(((((((...	chr16:30675665-30675938(+)$1	1	58	81	23.9090
............)))........	chr11:66010846-66011124(+)$1	1	102	125	25.8181
.......................	chrX:122735192-122735424(-)$1	1	67	90	37.7272
......................(	chr22:35690691-35690988(+)$1	1	109	132	24.5454
.......................	chr11:73685698-73685998(-)$1	1	31	54	21.6363
.......................	chr16:69733920-69734152(+)$1	1	86	109	33.2727
.......................	chrX:133930482-133930754(-)$1	1	67	90	27.6363
.......................	chrX:122735164-122735392(-)$1	1	35	58	37.7272
.......................	chr19:35759900-35760167(+)$1	1	36	59	33.9090
))))...................	chr5:112929774-112930106(+)$1	1	166	189	29.0909
)))))....((..(((.......	chr1:153923955-153924222(-)$1	1	189	212	24.3636
.)))))).))..((..((.....	chr12:53845903-53846181(+)$1	1	26	49	28.4545
.((((....(((((...((((((	chr19:56671810-56672084(+)$1	1	82	105	27.0000
.......................	chr12:53845993-53846218(+)$1	1	9	32	26.1818
).)..)..)).))))))).....	chr3:185348981-185349287(+)$1	1	234	257	32.4545
..((((....((......)).((	chr2:172016818-172017096(-)$1	1	38	61	22.0909
((((((.................	chrX:56592276-56592517(+)$1	1	129	152	27.2727
(((...(((((............	chr2:48132736-48133034(-)$1	1	57	80	21.0000
((.((((...(((..(((....(	chr1:27633884-27634183(+)$1	1	211	234	30.6363
(...((((((..((((.((((..	chrX:109417584-109417834(+)$1	1	22	45	39.8181
)........(((((..((.....	chr19:18642478-18642745(-)$1	1	102	125	22.0000
...((((((..((..(((.....	chrX:53263350-53263626(-)$1	1	73	96	27.7272
(((((....((((((...(((((	chr4:726033-726340(+)$1	1	114	137	29.5454
(((((....(((.........((	chr9:132900673-132901068(+)$1	1	5	28	24.0000
............(((((((((((	chr1:227179468-227179769(-)$1	1	97	120	25.5454
....(((.....)))........	chr12:53846023-53846230(+)$1	1	70	93	25.2727
.......................	chr19:57742903-57743238(+)$1	1	33	56	31.6363
.......................	chr1:205759028-205759303(-)$1	1	112	135	24.5454
(................))....	chr17:8063730-8064002(-)$1	1	221	244	22.0000
(((.....((...........((	chr1:1250890-1251176(-)$1	1	5	28	31.9090
....................)))	chr19:41829443-41829714(+)$1	1	113	136	21.5454
.........(((.((........	chr17:7154739-7154990(-)$1	1	21	44	23.8181
...........(((.(((.((((	chrX:133930201-133930461(-)$1	1	34	57	25.4545
.......................	chrX:122735101-122735364(-)$1	1	7	30	37.7272
.........(((((((...(((.	chr12:65089790-65090101(+)$1	1	97	120	38.3636
.......................	chr11:203837-204060(-)$1	1	89	112	32.8181
......((.((((((.(((....	chr5:141693069-141693405(-)$1	1	8	31	24.0909
(((......(((.(((..(((..	chr2:240898913-240899174(-)$1	1	44	67	29.0909
..((((((.((((((((((((((	chr15:56535239-56535517(-)$1	1	0	23	28.3636
.......................	chr3:47454302-47454586(+)$1	1	89	112	23.1818
((.....))..)))..)))..))	chr6:30654175-30654449(-)$1	1	105	128	24.7272
......)))..))))))......	chr19:14203530-14203758(-)$1	1	41	64	25.0909
(((..((((((.((((((((...	chr20:47804552-47804849(-)$1	1	85	108	24.2727
)..))))))))))))))))....	chr1:160328138-160328463(+)$1	1	91	114	21.9090
..((...(((..((((.((((..	chrX:109417506-109417784(+)$1	1	100	123	39.8181
.......................	chr19:14203465-14203730(-)$1	1	13	36	25.0909

#PSSM
c : 0.58	C : 0.12	u : 0.09	U : 0.05	a : 0.05	G : 0.03	g : 0.03	A : 0.01	
c : 0.63	C : 0.16	u : 0.12	G : 0.03	A : 0.01	g : 0.01	
c : 0.67	C : 0.14	U : 0.07	a : 0.05	u : 0.05	
c : 0.69	C : 0.18	u : 0.07	U : 0.03	a : 0.01	
u : 0.60	U : 0.18	g : 0.07	c : 0.07	a : 0.03	A : 0.01	C : 0.01	
c : 0.72	C : 0.16	g : 0.05	u : 0.03	U : 0.01	
c : 0.80	C : 0.16	U : 0.01	u : 0.01	
c : 0.63	C : 0.14	u : 0.12	a : 0.05	G : 0.03	
u : 0.65	c : 0.10	C : 0.09	U : 0.09	g : 0.05	
c : 0.65	g : 0.09	C : 0.09	u : 0.07	G : 0.03	U : 0.03	A : 0.01	
c : 0.74	C : 0.18	g : 0.03	u : 0.01	a : 0.01	
c : 0.72	C : 0.14	u : 0.07	a : 0.01	A : 0.01	G : 0.01	
u : 0.52	c : 0.18	U : 0.12	g : 0.07	C : 0.05	a : 0.03	
c : 0.70	C : 0.14	u : 0.05	g : 0.03	G : 0.03	a : 0.01	
u : 0.41	c : 0.38	C : 0.14	U : 0.03	a : 0.01	
c : 0.40	u : 0.38	C : 0.09	U : 0.07	a : 0.01	g : 0.01	G : 0.01	
u : 0.54	c : 0.23	U : 0.12	g : 0.03	C : 0.03	G : 0.01	
c : 0.60	u : 0.18	C : 0.12	g : 0.03	U : 0.03	G : 0.01	
c : 0.70	C : 0.16	u : 0.07	g : 0.03	U : 0.01	
c : 0.61	u : 0.20	C : 0.12	U : 0.05	
u : 0.56	c : 0.20	U : 0.09	C : 0.07	A : 0.03	a : 0.03	
c : 0.65	C : 0.16	u : 0.07	g : 0.05	a : 0.01	A : 0.01	U : 0.01	
c : 0.43	u : 0.27	C : 0.10	U : 0.07	a : 0.03	G : 0.03	g : 0.01	A : 0.01	

#score	1522.6363636363642
#seq	55
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_UTR_m3_run2.nuc.txt

#NT
CCCUGACC	chr17:79780616-79780864(-)$1	248	27	35	15.5517
CCCUGCAC	chr17:6917599-6917924(+)$1	325	53	61	15.6379
CCCUGccc	chr17:80708516-80708887(+)$1	371	119	127	20.1206
CUCUGCCC	chr7:2701757-2702023(+)$1	266	89	97	16.1551
CCCUGCCC	chr16:87865405-87865671(-)$1	266	3	11	20.1206
CCCUGCAC	chr6:34212917-34213193(+)$1	276	44	52	15.6379
CCGUGCCC	chr19:47113423-47113713(+)$1	290	119	127	15.9827
UCCUGCCC	chr6:32136674-32136992(-)$1	318	107	115	15.8965
CCCAGCCC	chr17:39978997-39979308(+)$1	311	54	62	15.9827
cucugccc	chr9:116831892-116832124(-)$1	232	191	199	16.1551
CCCUCCCC	chr6:29913285-29913589(+)$1	304	139	147	16.0689
CCCGGCCC	chr19:45496083-45496388(+)$1	305	123	131	16.3275
CCUUGCCC	chr1:11986188-11986449(-)$1	261	132	140	15.7241
CGCUGCCC	chr17:7154841-7155107(-)$1	266	23	31	15.8965
CCCUGCCC	chr6:41567122-41567380(+)$1	258	59	67	20.1206
CCCUGCCC	chr12:49332515-49332789(-)$1	274	114	122	20.1206
CCCGGCCC	chr11:2160017-2160231(-)$1	214	145	153	16.3275
ACCUGCCC	chr11:1774100-1774356(-)$1	256	37	45	15.8103
CCCUCCCC	chr10:88853898-88854183(-)$1	285	149	157	16.0689
GCCUGCCC	chr11:2159645-2159862(-)$1	217	16	24	15.7241
CCCUACCC	chr22:43015225-43015493(-)$1	268	235	243	15.8103
CCGUGCCC	chr17:80036809-80037033(-)$1	224	17	25	15.9827
CCCGGCCC	chr19:582463-582682(+)$1	219	30	38	16.3275
CCCUGCCC	chr3:47894065-47894355(-)$1	290	156	164	20.1206
cucugccc	chr11:2159595-2159813(-)$1	218	51	59	16.1551
cccugcgc	chr19:18717370-18717702(-)$1	332	178	186	15.5517
cccuggcc	chr17:8063741-8064040(-)$1	299	254	262	15.5517
ACCUGCCC	chr2:219269134-219269403(+)$1	269	33	41	15.8103
CCCUGCCC	chr14:23794781-23795071(+)$1	290	0	8	20.1206
CCCUGCCC	chr2:68479301-68479572(-)$1	271	113	121	20.1206
CCGUGCCC	chr19:6719243-6719514(-)$1	271	81	89	15.9827
UCCUGCCC	chr11:2151497-2151755(-)$1	258	58	66	15.8965
CCAUGCCC	chr20:33298157-33298424(+)$1	267	182	190	15.7241
CCCUGCCC	chr1:6651648-6651941(-)$1	293	195	203	20.1206
CCCUGUCC	chr19:40884006-40884332(+)$1	326	141	149	15.6379
CCCAGCCC	chr11:2159486-2159703(-)$1	217	26	34	15.9827
cccugcuc	chr1:214161434-214161743(+)$1	309	129	137	15.5517
CCCGGCCC	chr16:30012572-30012915(+)$1	343	16	24	16.3275
CCCUGCCU	chr20:23614336-23614576(-)$1	240	106	114	15.6379
CCCUGCCC	chr1:31907212-31907477(+)$1	265	236	244	20.1206
CCCGGCCC	chr11:2159896-2160104(-)$1	208	18	26	16.3275
CCCUGCCC	chr19:47278626-47278869(-)$1	243	120	128	20.1206
CCCUGUCC	chr6:44221323-44221606(+)$1	283	86	94	15.6379
cucugccc	chr20:31611315-31611561(+)$1	246	106	114	16.1551
CCCUCCCC	chr1:8921196-8921520(-)$1	324	147	155	16.0689
CCCUUCCC	chr12:112451143-112451490(+)$1	347	238	246	15.8965
CCCUGCCU	chr12:57606509-57606760(+)$1	251	17	25	15.6379
CCCGGCCC	chr20:62572849-62573116(-)$1	267	238	246	16.3275
CCCUGCCC	chr2:68479238-68479501(-)$1	263	42	50	20.1206
CCCUGCCC	chr19:18642713-18643006(-)$1	293	66	74	20.1206
CGCUGCCC	chr11:65325280-65325602(-)$1	322	51	59	15.8965
CUCUGCCC	chr22:36678057-36678339(-)$1	282	117	125	16.1551
CCCUGCCC	chr2:220403838-220404099(-)$1	261	213	221	20.1206
CCCUUCCC	chr12:57606411-57606650(+)$1	239	8	16	15.8965
CCCUCCCC	chr11:2160216-2160418(-)$1	202	140	148	16.0689
CCCUGCCU	chr2:85548083-85548386(-)$1	303	117	125	15.6379
UCCUGCCC	chr15:79214340-79214618(-)$1	278	214	222	15.8965

#otherMatches

#Struct PSSM
::cccooo	chr17:40947039-40947460(+)$1	421	121	129	15.9827
ee::::::	chr17:79780616-79780864(-)$1	248	27	35	15.5517
6666bb::	chr17:6917599-6917924(+)$1	325	53	61	15.6379
g22ccc::	chr17:80708516-80708887(+)$1	371	119	127	20.1206
eeeooooo	chr7:2701757-2702023(+)$1	266	89	97	16.1551
EEEEE{CC	chr16:87865405-87865671(-)$1	266	3	11	20.1206
::JJJJJJ	chr6:34212917-34213193(+)$1	276	44	52	15.6379
33eeeee:	chr19:47113423-47113713(+)$1	290	119	127	15.9827
::::cccp	chr6:32136674-32136992(-)$1	318	107	115	15.8965
KKFFFFFF	chr17:39978997-39979308(+)$1	311	54	62	15.9827
:::ddddl	chr9:116831892-116832124(-)$1	232	191	199	16.1551
::CCCKKE	chr6:29913285-29913589(+)$1	304	139	147	16.0689
JJJJJJJJ	chr19:45496083-45496388(+)$1	305	123	131	16.3275
555fffff	chr1:11986188-11986449(-)$1	261	132	140	15.7241
[eeeee""	chr17:7154841-7155107(-)$1	266	23	31	15.8965
rrrrbb:d	chr6:41567122-41567380(+)$1	258	59	67	20.1206
:::::::G	chr12:49332515-49332789(-)$1	274	114	122	20.1206
oooccc::	chr11:2160017-2160231(-)$1	214	145	153	16.3275
qqqqqqbb	chr11:1774100-1774356(-)$1	256	37	45	15.8103
hhhh"""a	chr10:88853898-88854183(-)$1	285	149	157	16.0689
mmmmbba]	chr11:2159645-2159862(-)$1	217	16	24	15.7241
fff66666	chr22:43015225-43015493(-)$1	268	235	243	15.8103
KFFFFFFK	chr17:80036809-80037033(-)$1	224	17	25	15.9827
HHHH{BBB	chr19:582463-582682(+)$1	219	30	38	16.3275
qqgggggg	chr3:47894065-47894355(-)$1	290	156	164	20.1206
d^^^^^^^	chr11:2159595-2159813(-)$1	218	51	59	16.1551
EEEEEEEE	chr19:18717370-18717702(-)$1	332	178	186	15.5517
::::DDDD	chr17:8063741-8064040(-)$1	299	254	262	15.5517
::IIIIII	chr2:219269134-219269403(+)$1	269	33	41	15.8103
:EEEEEPP	chr14:23794781-23795071(+)$1	290	0	8	20.1206
::::dddd	chr2:68479301-68479572(-)$1	271	113	121	20.1206
::EEEEE:	chr19:6719243-6719514(-)$1	271	81	89	15.9827
CCIIIIII	chr11:2151497-2151755(-)$1	258	58	66	15.8965
ssdddd::	chr20:33298157-33298424(+)$1	267	182	190	15.7241
""iiiiii	chr1:6651648-6651941(-)$1	293	195	203	20.1206
ccc:EEEE	chr19:40884006-40884332(+)$1	326	141	149	15.6379
BLLLCCCM	chr11:2159486-2159703(-)$1	217	26	34	15.9827
rrrrbb::	chr1:214161434-214161743(+)$1	309	129	137	15.5517
eeeee!!f	chr16:30012572-30012915(+)$1	343	16	24	16.3275
%%%%bba[	chr20:23614336-23614576(-)$1	240	106	114	15.6379
e333ccc5	chr1:31907212-31907477(+)$1	265	236	244	20.1206
OODDDD::	chr11:2159896-2160104(-)$1	208	18	26	16.3275
sssssddd	chr19:47278626-47278869(-)$1	243	120	128	20.1206
KKEEEEE:	chr6:44221323-44221606(+)$1	283	86	94	15.6379
b[cccqqq	chr20:31611315-31611561(+)$1	246	106	114	16.1551
rrrrrrrb	chr1:8921196-8921520(-)$1	324	147	155	16.0689
d"""gggg	chr12:112451143-112451490(+)$1	347	238	246	15.8965
========	chr12:57606509-57606760(+)$1	251	17	25	15.6379
BBBYYCCC	chr20:62572849-62573116(-)$1	267	238	246	16.3275
::::dddd	chr2:68479238-68479501(-)$1	263	42	50	20.1206
LLCCCKKF	chr19:18642713-18643006(-)$1	293	66	74	20.1206
JJJJJJJJ	chr11:65325280-65325602(-)$1	322	51	59	15.8965
::dddd[c	chr22:36678057-36678339(-)$1	282	117	125	16.1551
HHHHHHHH	chr2:220403838-220404099(-)$1	261	213	221	20.1206
pppppppe	chr12:57606411-57606650(+)$1	239	8	16	15.8965
ccqqqqqq	chr11:2160216-2160418(-)$1	202	140	148	16.0689
777ccc22	chr2:85548083-85548386(-)$1	303	117	125	15.6379
ddd]dddd	chr15:79214340-79214618(-)$1	278	214	222	15.8965

#DB
..(((...	chr17:40947039-40947460(+)$1	1	121	129	15.9827
))......	chr17:79780616-79780864(-)$1	1	27	35	15.5517
....))..	chr17:6917599-6917924(+)$1	1	53	61	15.6379
)..)))..	chr17:80708516-80708887(+)$1	1	119	127	20.1206
(((.....	chr7:2701757-2702023(+)$1	1	89	97	16.1551
(((((.((	chr16:87865405-87865671(-)$1	1	3	11	20.1206
..((((((	chr6:34212917-34213193(+)$1	1	44	52	15.6379
..))))).	chr19:47113423-47113713(+)$1	1	119	127	15.9827
....(((.	chr6:32136674-32136992(-)$1	1	107	115	15.8965
..((((((	chr17:39978997-39979308(+)$1	1	54	62	15.9827
...((((.	chr9:116831892-116832124(-)$1	1	191	199	16.1551
..(((..(	chr6:29913285-29913589(+)$1	1	139	147	16.0689
((((((((	chr19:45496083-45496388(+)$1	1	123	131	16.3275
...)))))	chr1:11986188-11986449(-)$1	1	132	140	15.7241
.(((((..	chr17:7154841-7155107(-)$1	1	23	31	15.8965
....)).(	chr6:41567122-41567380(+)$1	1	59	67	20.1206
.......)	chr12:49332515-49332789(-)$1	1	114	122	20.1206
...)))..	chr11:2160017-2160231(-)$1	1	145	153	16.3275
......))	chr11:1774100-1774356(-)$1	1	37	45	15.8103
((((...(	chr10:88853898-88854183(-)$1	1	149	157	16.0689
....))).	chr11:2159645-2159862(-)$1	1	16	24	15.7241
))).....	chr22:43015225-43015493(-)$1	1	235	243	15.8103
.((((((.	chr17:80036809-80037033(-)$1	1	17	25	15.9827
((((.(((	chr19:582463-582682(+)$1	1	30	38	16.3275
..))))))	chr3:47894065-47894355(-)$1	1	156	164	20.1206
(.......	chr11:2159595-2159813(-)$1	1	51	59	16.1551
))))((((	chr19:18717370-18717702(-)$1	1	178	186	15.5517
....))))	chr17:8063741-8064040(-)$1	1	254	262	15.5517
..((((((	chr2:219269134-219269403(+)$1	1	33	41	15.8103
.(((((..	chr14:23794781-23795071(+)$1	1	0	8	20.1206
....((((	chr2:68479301-68479572(-)$1	1	113	121	20.1206
..))))).	chr19:6719243-6719514(-)$1	1	81	89	15.9827
))))))))	chr11:2151497-2151755(-)$1	1	58	66	15.8965
..))))..	chr20:33298157-33298424(+)$1	1	182	190	15.7241
..((((((	chr1:6651648-6651941(-)$1	1	195	203	20.1206
))).))))	chr19:40884006-40884332(+)$1	1	141	149	15.6379
(...(((.	chr11:2159486-2159703(-)$1	1	26	34	15.9827
....))..	chr1:214161434-214161743(+)$1	1	129	137	15.5517
(((((..(	chr16:30012572-30012915(+)$1	1	16	24	16.3275
....(((.	chr20:23614336-23614576(-)$1	1	106	114	15.6379
)...))).	chr1:31907212-31907477(+)$1	1	236	244	20.1206
..((((..	chr11:2159896-2160104(-)$1	1	18	26	16.3275
.....)))	chr19:47278626-47278869(-)$1	1	120	128	20.1206
..(((((.	chr6:44221323-44221606(+)$1	1	86	94	15.6379
(.(((...	chr20:31611315-31611561(+)$1	1	106	114	16.1551
.......)	chr1:8921196-8921520(-)$1	1	147	155	16.0689
(...((((	chr12:112451143-112451490(+)$1	1	238	246	15.8965
((((((((	chr12:57606509-57606760(+)$1	1	17	25	15.6379
)))..)))	chr20:62572849-62573116(-)$1	1	238	246	16.3275
....((((	chr2:68479238-68479501(-)$1	1	42	50	20.1206
..(((..(	chr19:18642713-18643006(-)$1	1	66	74	20.1206
((((((((	chr11:65325280-65325602(-)$1	1	51	59	15.8965
..((((.(	chr22:36678057-36678339(-)$1	1	117	125	16.1551
))))))))	chr2:220403838-220404099(-)$1	1	213	221	20.1206
.......)	chr12:57606411-57606650(+)$1	1	8	16	15.8965
((......	chr11:2160216-2160418(-)$1	1	140	148	16.0689
...)))..	chr2:85548083-85548386(-)$1	1	117	125	15.6379
))).))))	chr15:79214340-79214618(-)$1	1	214	222	15.8965

#PSSM
C : 0.79	c : 0.10	U : 0.05	A : 0.03	G : 0.01	
C : 0.82	u : 0.05	c : 0.05	U : 0.03	G : 0.03	
C : 0.79	c : 0.10	G : 0.06	U : 0.01	A : 0.01	
U : 0.75	u : 0.10	G : 0.10	A : 0.03	
G : 0.77	g : 0.10	C : 0.06	U : 0.03	A : 0.01	
C : 0.82	c : 0.10	U : 0.03	A : 0.01	g : 0.01	
C : 0.84	c : 0.08	A : 0.03	g : 0.01	u : 0.01	
C : 0.82	c : 0.12	U : 0.05	

#score	978.0344827586212
#seq	58
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_CDS_m2_run1.nuc.txt

#NT
ccucc	chrX:129147755-129148080(+)$1	325	28	33	14.2105
ucucc	chr12:53858528-53858736(+)$1	208	126	131	10.7894
CCUCC	chrX:129147373-129147638(+)$1	265	122	127	14.2105
ccucc	chr17:28256911-28257216(-)$1	305	71	76	14.2105
ccucc	chr12:7045551-7045779(+)$1	228	32	37	14.2105
ccucc	chr5:61602141-61602416(+)$1	275	71	76	14.2105
ccucc	chr19:55653194-55653529(-)$1	335	121	126	14.2105
ccucc	chr16:15031894-15032176(+)$1	282	8	13	14.2105
UCUCC	chr17:7417159-7417438(+)$1	279	34	39	10.7894
CCUCC	chr19:36211904-36212166(+)$1	262	37	42	14.2105
CCUCC	chr3:10360782-10361102(-)$1	320	18	23	14.2105
CCUCC	chr17:27212844-27213132(-)$1	288	116	121	14.2105
CCUCC	chr12:49434104-49434355(-)$1	251	13	18	14.2105
CCUCC	chr17:76198603-76198909(+)$1	306	288	293	14.2105
UCUCC	chr16:30675945-30676180(+)$1	235	70	75	10.7894
UCUCC	chr16:30748693-30748932(+)$1	239	95	100	10.7894
ccucc	chr10:121355842-121356127(-)$1	285	72	77	14.2105
ucucc	chr17:7417245-7417499(+)$1	254	11	16	10.7894
CCUCC	chr2:48132736-48133034(-)$1	298	27	32	14.2105
CCUCC	chr7:98507771-98508049(+)$1	278	49	54	14.2105
ccucc	chr7:116608303-116608597(+)$1	294	10	15	14.2105
ccucc	chr19:14203465-14203730(-)$1	265	15	20	14.2105
UCUCC	chr16:30675934-30676145(+)$1	211	81	86	10.7894
CCUCC	chr19:51323498-51323741(-)$1	243	19	24	14.2105
ccucc	chr14:63861857-63862167(-)$1	310	17	22	14.2105
CCUCC	chr1:1250698-1250970(-)$1	272	121	126	14.2105
UCUCC	chr4:77977142-77977350(-)$1	208	61	66	10.7894
CCUCC	chr14:99976925-99977207(+)$1	282	19	24	14.2105
ccucc	chr7:29923579-29923855(+)$1	276	56	61	14.2105
ccucc	chr14:99976838-99977105(+)$1	267	2	7	14.2105
ccucc	chrX:53308719-53308996(-)$1	277	2	7	14.2105
ccucc	chr17:80708448-80708715(+)$1	267	193	198	14.2105
CCUCC	chr19:8468334-8468593(+)$1	259	116	121	14.2105
ccucc	chr2:61697690-61697970(-)$1	280	27	32	14.2105
UCUCC	chr4:77977150-77977355(-)$1	205	66	71	10.7894
CCUCC	chr5:31526543-31526770(-)$1	227	70	75	14.2105
CCUCC	chr1:8420515-8420782(-)$1	267	57	62	14.2105
CCUCC	chr1:8420254-8420570(-)$1	316	56	61	14.2105
CCUCC	chr1:16262385-16262744(+)$1	359	202	207	14.2105
CCUCC	chr5:31526437-31526728(-)$1	291	28	33	14.2105
CCUCC	chr5:175956982-175957200(-)$1	218	169	174	14.2105
ccucc	chrX:53263350-53263626(-)$1	276	62	67	14.2105
CCUCC	chr12:49444057-49444362(-)$1	305	52	57	14.2105
CCUCC	chr1:153923955-153924222(-)$1	267	116	121	14.2105
CCUCC	chr19:51323541-51323850(-)$1	309	75	80	14.2105
CCUCC	chr1:33236873-33237149(+)$1	276	25	30	14.2105
CCUCC	chr1:33236832-33237073(+)$1	241	66	71	14.2105
ccucc	chr4:25792069-25792348(-)$1	279	27	32	14.2105
CCUCC	chr12:32260082-32260393(+)$1	311	158	163	14.2105
ucucc	chr2:172016818-172017096(-)$1	278	30	35	10.7894
CCUCC	chr16:30389899-30390184(-)$1	285	31	36	14.2105
CCUCC	chr10:73958163-73958542(-)$1	379	224	229	14.2105
ccucc	chr1:1250890-1251176(-)$1	286	7	12	14.2105
ccucc	chr19:35759900-35760167(+)$1	267	33	38	14.2105
ccucc	chr16:30675665-30675938(+)$1	273	39	44	14.2105
ccucc	chr17:4793421-4793683(+)$1	262	7	12	14.2105

#otherMatches

#Struct PSSM
qqqqq	chr2:172016736-172017018(-)$1	282	252	257	14.2105
::::D	chrX:129147755-129148080(+)$1	325	28	33	14.2105
eeell	chr12:53858528-53858736(+)$1	208	126	131	10.7894
:::::	chrX:129147373-129147638(+)$1	265	122	127	14.2105
]dddd	chr17:28256911-28257216(-)$1	305	71	76	14.2105
ddd^^	chr12:7045551-7045779(+)$1	228	32	37	14.2105
:::::	chr5:61602141-61602416(+)$1	275	71	76	14.2105
!dddd	chr19:55653194-55653529(-)$1	335	121	126	14.2105
:::::	chr16:15031894-15032176(+)$1	282	8	13	14.2105
^^^^^	chr17:7417159-7417438(+)$1	279	34	39	10.7894
!!a++	chr19:36211904-36212166(+)$1	262	37	42	14.2105
C{FFF	chr3:10360782-10361102(-)$1	320	18	23	14.2105
:::::	chr17:27212844-27213132(-)$1	288	116	121	14.2105
[ccc[	chr12:49434104-49434355(-)$1	251	13	18	14.2105
mm===	chr17:76198603-76198909(+)$1	306	288	293	14.2105
hhh::	chr16:30675945-30676180(+)$1	235	70	75	10.7894
:::::	chr16:30748693-30748932(+)$1	239	95	100	10.7894
OOOOO	chr10:121355842-121356127(-)$1	285	72	77	14.2105
:::::	chr17:7417245-7417499(+)$1	254	11	16	10.7894
ppppp	chr2:48132736-48133034(-)$1	298	27	32	14.2105
ddd33	chr7:98507771-98508049(+)$1	278	49	54	14.2105
:::::	chr7:116608303-116608597(+)$1	294	10	15	14.2105
:::::	chr19:14203465-14203730(-)$1	265	15	20	14.2105
hhh::	chr16:30675934-30676145(+)$1	211	81	86	10.7894
:::::	chr19:51323498-51323741(-)$1	243	19	24	14.2105
:::::	chr14:63861857-63862167(-)$1	310	17	22	14.2105
fffff	chr1:1250698-1250970(-)$1	272	121	126	14.2105
EEEE:	chr4:77977142-77977350(-)$1	208	61	66	10.7894
CCC{A	chr14:99976925-99977207(+)$1	282	19	24	14.2105
:::::	chr7:29923579-29923855(+)$1	276	56	61	14.2105
CCC{H	chr14:99976838-99977105(+)$1	267	2	7	14.2105
:::::	chrX:53308719-53308996(-)$1	277	2	7	14.2105
:::::	chr17:80708448-80708715(+)$1	267	193	198	14.2105
EEEE:	chr19:8468334-8468593(+)$1	259	116	121	14.2105
GGGGG	chr2:61697690-61697970(-)$1	280	27	32	14.2105
EEEE:	chr4:77977150-77977355(-)$1	205	66	71	10.7894
ppppp	chr5:31526543-31526770(-)$1	227	70	75	14.2105
:::::	chr1:8420515-8420782(-)$1	267	57	62	14.2105
]ccc:	chr1:8420254-8420570(-)$1	316	56	61	14.2105
bbooo	chr1:16262385-16262744(+)$1	359	202	207	14.2105
ppppp	chr5:31526437-31526728(-)$1	291	28	33	14.2105
lleee	chr5:175956982-175957200(-)$1	218	169	174	14.2105
:::::	chrX:53263350-53263626(-)$1	276	62	67	14.2105
:::::	chr12:49444057-49444362(-)$1	305	52	57	14.2105
:::::	chr1:153923955-153924222(-)$1	267	116	121	14.2105
ooooe	chr19:51323541-51323850(-)$1	309	75	80	14.2105
LCCC:	chr1:33236873-33237149(+)$1	276	25	30	14.2105
:::::	chr1:33236832-33237073(+)$1	241	66	71	14.2105
:::::	chr4:25792069-25792348(-)$1	279	27	32	14.2105
d^^^^	chr12:32260082-32260393(+)$1	311	158	163	14.2105
:::::	chr2:172016818-172017096(-)$1	278	30	35	10.7894
cclll	chr16:30389899-30390184(-)$1	285	31	36	14.2105
55ddd	chr10:73958163-73958542(-)$1	379	224	229	14.2105
FNNNN	chr1:1250890-1251176(-)$1	286	7	12	14.2105
^^^^^	chr19:35759900-35760167(+)$1	267	33	38	14.2105
LLLFF	chr16:30675665-30675938(+)$1	273	39	44	14.2105
NNNNN	chr17:4793421-4793683(+)$1	262	7	12	14.2105

#DB
.....	chr2:172016736-172017018(-)$1	1	252	257	14.2105
....(	chrX:129147755-129148080(+)$1	1	28	33	14.2105
(((..	chr12:53858528-53858736(+)$1	1	126	131	10.7894
.....	chrX:129147373-129147638(+)$1	1	122	127	14.2105
.))))	chr17:28256911-28257216(-)$1	1	71	76	14.2105
(((..	chr12:7045551-7045779(+)$1	1	32	37	14.2105
.....	chr5:61602141-61602416(+)$1	1	71	76	14.2105
.((((	chr19:55653194-55653529(-)$1	1	121	126	14.2105
.....	chr16:15031894-15032176(+)$1	1	8	13	14.2105
.....	chr17:7417159-7417438(+)$1	1	34	39	10.7894
..(..	chr19:36211904-36212166(+)$1	1	37	42	14.2105
(.(((	chr3:10360782-10361102(-)$1	1	18	23	14.2105
.....	chr17:27212844-27213132(-)$1	1	116	121	14.2105
.(((.	chr12:49434104-49434355(-)$1	1	13	18	14.2105
..)))	chr17:76198603-76198909(+)$1	1	288	293	14.2105
)))..	chr16:30675945-30676180(+)$1	1	70	75	10.7894
.....	chr16:30748693-30748932(+)$1	1	95	100	10.7894
.....	chr10:121355842-121356127(-)$1	1	72	77	14.2105
.....	chr17:7417245-7417499(+)$1	1	11	16	10.7894
.....	chr2:48132736-48133034(-)$1	1	27	32	14.2105
)))..	chr7:98507771-98508049(+)$1	1	49	54	14.2105
.....	chr7:116608303-116608597(+)$1	1	10	15	14.2105
.....	chr19:14203465-14203730(-)$1	1	15	20	14.2105
)))..	chr16:30675934-30676145(+)$1	1	81	86	10.7894
.....	chr19:51323498-51323741(-)$1	1	19	24	14.2105
.....	chr14:63861857-63862167(-)$1	1	17	22	14.2105
)))))	chr1:1250698-1250970(-)$1	1	121	126	14.2105
((((.	chr4:77977142-77977350(-)$1	1	61	66	10.7894
(((.(	chr14:99976925-99977207(+)$1	1	19	24	14.2105
.....	chr7:29923579-29923855(+)$1	1	56	61	14.2105
(((.(	chr14:99976838-99977105(+)$1	1	2	7	14.2105
.....	chrX:53308719-53308996(-)$1	1	2	7	14.2105
.....	chr17:80708448-80708715(+)$1	1	193	198	14.2105
((((.	chr19:8468334-8468593(+)$1	1	116	121	14.2105
(((((	chr2:61697690-61697970(-)$1	1	27	32	14.2105
((((.	chr4:77977150-77977355(-)$1	1	66	71	10.7894
.....	chr5:31526543-31526770(-)$1	1	70	75	14.2105
.....	chr1:8420515-8420782(-)$1	1	57	62	14.2105
.))).	chr1:8420254-8420570(-)$1	1	56	61	14.2105
((...	chr1:16262385-16262744(+)$1	1	202	207	14.2105
.....	chr5:31526437-31526728(-)$1	1	28	33	14.2105
..)))	chr5:175956982-175957200(-)$1	1	169	174	14.2105
.....	chrX:53263350-53263626(-)$1	1	62	67	14.2105
.....	chr12:49444057-49444362(-)$1	1	52	57	14.2105
.....	chr1:153923955-153924222(-)$1	1	116	121	14.2105
....)	chr19:51323541-51323850(-)$1	1	75	80	14.2105
.(((.	chr1:33236873-33237149(+)$1	1	25	30	14.2105
.....	chr1:33236832-33237073(+)$1	1	66	71	14.2105
.....	chr4:25792069-25792348(-)$1	1	27	32	14.2105
(....	chr12:32260082-32260393(+)$1	1	158	163	14.2105
.....	chr2:172016818-172017096(-)$1	1	30	35	10.7894
((...	chr16:30389899-30390184(-)$1	1	31	36	14.2105
..)))	chr10:73958163-73958542(-)$1	1	224	229	14.2105
(....	chr1:1250890-1251176(-)$1	1	7	12	14.2105
.....	chr19:35759900-35760167(+)$1	1	33	38	14.2105
...((	chr16:30675665-30675938(+)$1	1	39	44	14.2105
.....	chr17:4793421-4793683(+)$1	1	7	12	14.2105

#PSSM
C : 0.45	c : 0.38	U : 0.10	u : 0.05	
C : 0.56	c : 0.43	
U : 0.56	u : 0.43	
C : 0.56	c : 0.43	
C : 0.56	c : 0.43	

#score	779.2105263157897
#seq	57
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_UTR_m3_run2.nuc.txt

#NT
uaaaucucgcugaauugaagagacaggacuggcaguuggggaggccacagcagcuagaauuuccaggggaaaguacuggagagaugggauccuucuagauacagggcucaagaagucugcugggaguccccugaguccuuugacuuaguacugacuugcacugaggccaggaaaagaagcacuggaaagcagcaggcugaacaauuccuggaacucaugcagggcugggaauaguuuauguucucagcagccagagug	chr12:133500916-133501184(-)$1	268	10	268	344.0000

#otherMatches

#Struct PSSM
::::eeeee[bbnnnnnbb]eeeee:::::eeeee[cccvvvvvvvvvvvvvccc]eeeee:::bb[bb[eeeee[bboooooobb]eeeee]bb]bb:::FFFFFF{AOOOOOOFFFFFFLLLCCC{Abb[ccc[bbcccooooooccc]bb]cccbb:a[ddddnnnnndddd]a::::A}CCCYYFFFFFF______A}FFFFFF::::::bb[dddd[eeeee[bb[aeeeee!!ddddmmmmdddd22eeeee	chrX:106045887-106046278(+)$1	391	18	276	344.0000
::::ddddtttttttttttdddd:::::EEEEE::::EEEEEKKBB{FFFFFFBB::::gggggggrrrrrrrrrggggggg::dddd[ddddrrrrrrrrrdddddddd:::BB}FFFFFFBBYYEEEEEffffffmmmmffffff:::::::ffffff[dddd[ggggggg####ccc[cccqqqqqqqqcccccc666666ggggggg22ddddffffff==========nnnnn==========:EEEEE::::	chr12:133500916-133501184(-)$1	268	10	268	344.0000

#DB
....(((((.((.....)).))))).....(((((.(((.............))).)))))...((.((.(((((.((......)).))))).)).))...((((((.(......((((((...(((.(((.(((.(((((......))).)).))))).(.((((.....)))).)....).)))..))))))......).))))))......((.((((.(((((.((.((((((..((((....))))..)))))	chrX:106045887-106046278(+)$1	1	18	276	344.0000
....((((...........)))).....(((((....(((((..((.((((((((....(((((((.........)))))))..((((.((((.........))))))))...)).))))))))..)))))((((((....)))))).......((((((.((((.(((((((....(((.(((........))))))......)))))))..))))))))))((((((((((.....)))))))))).)))))....	chr12:133500916-133501184(-)$1	1	10	268	344.0000

#PSSM
A : 0.50	u : 0.50	
A : 0.50	a : 0.50	
U : 0.50	a : 0.50	
C : 0.50	a : 0.50	
U : 0.50	u : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
C : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	u : 0.50	
C : 0.50	g : 0.50	
U : 0.50	a : 0.50	
A : 0.50	a : 0.50	
C : 0.50	u : 0.50	
G : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	c : 0.50	
A : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	c : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	a : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	c : 0.50	
A : 0.50	a : 0.50	
A : 0.50	g : 0.50	
A : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	a : 0.50	
A : 0.50	g : 0.50	
A : 0.50	a : 0.50	
C : 0.50	a : 0.50	
C : 0.50	u : 0.50	
U : 0.50	u : 0.50	
G : 0.50	u : 0.50	
A : 0.50	c : 0.50	
G : 0.50	c : 0.50	
C : 0.50	a : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	a : 0.50	
U : 0.50	a : 0.50	
C : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	u : 0.50	
C : 0.50	a : 0.50	
U : 0.50	c : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
A : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
U : 0.50	u : 0.50	
U : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
A : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
A : 0.50	u : 0.50	
G : 0.50	a : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	c : 0.50	
A : 0.50	a : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	a : 0.50	
A : 0.50	g : 0.50	
C : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
A : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
A : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	u : 0.50	
C : 0.50	u : 0.50	
A : 0.50	g : 0.50	
U : 0.50	a : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
A : 0.50	u : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
C : 0.50	a : 0.50	
A : 0.50	c : 0.50	
C : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
C : 0.50	u : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
U : 0.50	a : 0.50	
U : 0.50	a : 0.50	
C : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
G : 0.50	a : 0.50	
A : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
U : 0.50	c : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	a : 0.50	
G : 0.50	a : 0.50	
A : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
A : 0.50	u : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
U : 0.50	a : 0.50	
G : 0.50	c : 0.50	
C : 0.50	a : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
C : 0.50	u : 0.50	
U : 0.50	c : 0.50	
G : 0.50	c : 0.50	
A : 0.50	u : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	a : 0.50	
A : 0.50	a : 0.50	
U : 0.50	c : 0.50	
G : 0.50	u : 0.50	
C : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
A : 0.50	a : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
U : 0.50	a : 0.50	
G : 0.50	u : 0.50	
A : 0.50	a : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
G : 0.50	u : 0.50	
A : 0.50	u : 0.50	
A : 0.50	a : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
U : 0.50	u : 0.50	
C : 0.50	c : 0.50	
C : 0.50	u : 0.50	
A : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
A : 0.50	c : 0.50	
C : 0.50	a : 0.50	
U : 0.50	g : 0.50	
U : 0.50	a : 0.50	
C : 0.50	g : 0.50	
G : 0.50	u : 0.50	
U : 0.50	g : 0.50	

#score	688.0
#seq	2
#width	258
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_UTR_m2_run1.nuc.txt

#NT
GCCC	chr20:57467330-57467613(+)$1	283	208	212	12.0000
GCCC	chr12:131356575-131356818(+)$1	243	113	117	12.0000
GCCC	chr8:11725101-11725348(-)$1	247	70	74	12.0000
GCCC	chr5:74162044-74162300(-)$1	256	179	183	12.0000
GCCC	chr19:42788308-42788565(+)$1	257	18	22	12.0000
GCCC	chr4:981675-981921(-)$1	246	23	27	12.0000
GCCC	chr5:176981025-176981295(-)$1	270	2	6	12.0000
gccc	chr17:7311430-7311681(+)$1	251	36	40	12.0000
GCCC	chr6:151187465-151187749(+)$1	284	145	149	12.0000
GCCC	chr3:48470510-48470774(-)$1	264	50	54	12.0000
GCCC	chr10:88853741-88853980(-)$1	239	23	27	12.0000
GCCC	chr5:92920552-92920811(+)$1	259	49	53	12.0000
GCCC	chr9:139743354-139743613(+)$1	259	201	205	12.0000
GCCC	chr5:92920398-92920634(+)$1	236	203	207	12.0000
GCCC	chr2:200323159-200323406(-)$1	247	128	132	12.0000
GCCC	chr8:12990686-12990934(-)$1	248	17	21	12.0000
GCCC	chr3:186502077-186502320(+)$1	243	12	16	12.0000
gccc	chr16:87426130-87426483(+)$1	353	94	98	12.0000
GCCC	chr8:12990823-12991137(-)$1	314	27	31	12.0000
GCCC	chr17:73900659-73900953(-)$1	294	5	9	12.0000
GCCC	chr8:8243852-8244099(-)$1	247	142	146	12.0000
GCCC	chr3:48470766-48471031(-)$1	265	6	10	12.0000
GCCC	chr12:31477242-31477518(-)$1	276	4	8	12.0000
GCCC	chr2:196522009-196522311(+)$1	302	42	46	12.0000
GCCC	chr12:131356824-131357101(+)$1	277	30	34	12.0000
gccc	chr16:30537681-30537930(-)$1	249	14	18	12.0000
GCCC	chr19:1258096-1258316(+)$1	220	138	142	12.0000
GCCC	chr3:37903470-37903736(+)$1	266	22	26	12.0000
gccc	chr19:45323309-45323567(+)$1	258	27	31	12.0000
GCCC	chr16:89627210-89627446(+)$1	236	24	28	12.0000
gccc	chr10:977206-977511(-)$1	305	5	9	12.0000
gccc	chr12:131356942-131357208(+)$1	266	5	9	12.0000
GCCC	chr10:74033745-74034033(+)$1	288	208	212	12.0000
GCCC	chr6:36164573-36164831(-)$1	258	32	36	12.0000
GCCC	chr1:2160039-2160323(+)$1	284	6	10	12.0000
GCCC	chr14:55255791-55256103(+)$1	312	241	245	12.0000
GCCC	chr16:4588150-4588444(-)$1	294	74	78	12.0000
gccc	chr2:240322019-240322251(-)$1	232	53	57	12.0000
GCCC	chr16:8962296-8962588(-)$1	292	60	64	12.0000
gccc	chr2:242447564-242447835(-)$1	271	35	39	12.0000
GCCC	chr8:144668923-144669173(-)$1	250	64	68	12.0000
GCCC	chr1:150595079-150595327(-)$1	248	12	16	12.0000
GCCC	chr2:241499690-241499930(-)$1	240	122	126	12.0000
gccc	chr8:145687993-145688245(-)$1	252	69	73	12.0000
GCCC	chr2:128180680-128180964(+)$1	284	145	149	12.0000
GCCC	chr10:43892137-43892428(-)$1	291	16	20	12.0000
GCCC	chr11:843223-843464(+)$1	241	8	12	12.0000
gccc	chr20:57267787-57268055(+)$1	268	5	9	12.0000
GCCC	chrX:20284785-20285011(-)$1	226	4	8	12.0000
GCCC	chr19:1258141-1258355(+)$1	214	93	97	12.0000
GCCC	chr15:93426587-93426861(+)$1	274	0	4	12.0000
GCCC	chr12:121416273-121416507(-)$1	234	53	57	12.0000
GCCC	chr12:133405118-133405402(-)$1	284	147	151	12.0000
GCCC	chr1:22379675-22379920(+)$1	245	16	20	12.0000
GCCC	chr19:42751653-42751886(-)$1	233	2	6	12.0000
gcCC	chr14:102786104-102786370(+)$1	266	56	60	12.0000
GCCC	chr19:2272816-2273083(+)$1	267	52	56	12.0000
GCCC	chr19:50816148-50816432(-)$1	284	43	47	12.0000
gccc	chr2:240322196-240322449(-)$1	253	54	58	12.0000
GCCC	chr5:179921609-179921883(+)$1	274	174	178	12.0000
GCCC	chr19:45854463-45854706(-)$1	243	35	39	12.0000
GCCC	chrX:20284811-20285050(-)$1	239	43	47	12.0000
gccc	chr2:42275202-42275460(+)$1	258	80	84	12.0000
GCCC	chr16:69166620-69166896(+)$1	276	35	39	12.0000
GCCC	chr19:50815984-50816227(-)$1	243	182	186	12.0000
GCCC	chr13:114144563-114144864(-)$1	301	33	37	12.0000
GCCC	chr1:12656074-12656320(-)$1	246	32	36	12.0000
GCCC	chr13:45914973-45915237(-)$1	264	189	193	12.0000
GCCC	chr12:121416307-121416541(-)$1	234	87	91	12.0000
GCCC	chr2:242447735-242448008(-)$1	273	57	61	12.0000
gccc	chr6:170123982-170124248(-)$1	266	76	80	12.0000
GCCC	chr3:195635687-195635941(-)$1	254	12	16	12.0000
gccc	chr16:4664270-4664496(-)$1	226	35	39	12.0000
GCCC	chr7:75544476-75544722(+)$1	246	65	69	12.0000
gccc	chr17:53499130-53499382(-)$1	252	56	60	12.0000
GCCC	chr19:41770823-41771081(+)$1	258	31	35	12.0000
GCCC	chr2:242592721-242592982(+)$1	261	36	40	12.0000
GCCC	chr19:55899450-55899724(+)$1	274	152	156	12.0000
GCCC	chr20:62526428-62526677(+)$1	249	12	16	12.0000
GCCC	chr19:1473958-1474231(-)$1	273	19	23	12.0000
GCCC	chr7:150777690-150777949(-)$1	259	121	125	12.0000
GCCC	chr19:56152446-56152693(+)$1	247	2	6	12.0000
gccc	chr20:62338443-62338694(-)$1	251	125	129	12.0000
gccc	chr12:58005524-58005834(+)$1	310	70	74	12.0000
gccc	chr17:80708899-80709159(+)$1	260	7	11	12.0000
gccc	chr19:3062229-3062530(-)$1	301	140	144	12.0000
GCCC	chr14:24564482-24564725(+)$1	243	114	118	12.0000
GCCC	chr2:20549951-20550293(-)$1	342	62	66	12.0000
GCCC	chr6:150071249-150071500(+)$1	251	106	110	12.0000
GCCC	chr17:43221243-43221508(+)$1	265	134	138	12.0000
GCCC	chr5:176873702-176874003(-)$1	301	9	13	12.0000
GCCC	chr7:5085632-5085913(+)$1	281	55	59	12.0000
GCCC	chr4:980578-980826(-)$1	248	145	149	12.0000
gccc	chr9:99381561-99381829(-)$1	268	38	42	12.0000

#otherMatches

#Struct PSSM
cccc	chr1:182360594-182360836(-)$1	242	2	6	12.0000
====	chr20:57467330-57467613(+)$1	283	208	212	12.0000
gggg	chr12:131356575-131356818(+)$1	243	113	117	12.0000
22bb	chr8:11725101-11725348(-)$1	247	70	74	12.0000
iiii	chr5:74162044-74162300(-)$1	256	179	183	12.0000
gggl	chr19:42788308-42788565(+)$1	257	18	22	12.0000
:HHH	chr4:981675-981921(-)$1	246	23	27	12.0000
cc[e	chr5:176981025-176981295(-)$1	270	2	6	12.0000
HHHJ	chr17:7311430-7311681(+)$1	251	36	40	12.0000
!fff	chr6:151187465-151187749(+)$1	284	145	149	12.0000
KIII	chr3:48470510-48470774(-)$1	264	50	54	12.0000
gggg	chr10:88853741-88853980(-)$1	239	23	27	12.0000
$$$$	chr5:92920552-92920811(+)$1	259	49	53	12.0000
}DDD	chr9:139743354-139743613(+)$1	259	201	205	12.0000
gggg	chr5:92920398-92920634(+)$1	236	203	207	12.0000
GBBd	chr2:200323159-200323406(-)$1	247	128	132	12.0000
dddd	chr8:12990686-12990934(-)$1	248	17	21	12.0000
IIIH	chr3:186502077-186502320(+)$1	243	12	16	12.0000
::bb	chr16:87426130-87426483(+)$1	353	94	98	12.0000
#ccc	chr8:12990823-12991137(-)$1	314	27	31	12.0000
[abb	chr17:73900659-73900953(-)$1	294	5	9	12.0000
::::	chr8:8243852-8244099(-)$1	247	142	146	12.0000
KEEE	chr3:48470766-48471031(-)$1	265	6	10	12.0000
DDCC	chr12:31477242-31477518(-)$1	276	4	8	12.0000
!!dd	chr2:196522009-196522311(+)$1	302	42	46	12.0000
qqqq	chr12:131356824-131357101(+)$1	277	30	34	12.0000
eeee	chr16:30537681-30537930(-)$1	249	14	18	12.0000
ddd]	chr19:1258096-1258316(+)$1	220	138	142	12.0000
DDDD	chr3:37903470-37903736(+)$1	266	22	26	12.0000
::::	chr19:45323309-45323567(+)$1	258	27	31	12.0000
ccc[	chr16:89627210-89627446(+)$1	236	24	28	12.0000
GGGG	chr10:977206-977511(-)$1	305	5	9	12.0000
eeee	chr12:131356942-131357208(+)$1	266	5	9	12.0000
B}BB	chr10:74033745-74034033(+)$1	288	208	212	12.0000
GGGG	chr6:36164573-36164831(-)$1	258	32	36	12.0000
hhhh	chr1:2160039-2160323(+)$1	284	6	10	12.0000
FFFF	chr14:55255791-55256103(+)$1	312	241	245	12.0000
ffff	chr16:4588150-4588444(-)$1	294	74	78	12.0000
eecc	chr2:240322019-240322251(-)$1	232	53	57	12.0000
ddda	chr16:8962296-8962588(-)$1	292	60	64	12.0000
FFII	chr2:242447564-242447835(-)$1	271	35	39	12.0000
ffff	chr8:144668923-144669173(-)$1	250	64	68	12.0000
DDDD	chr1:150595079-150595327(-)$1	248	12	16	12.0000
ddmm	chr2:241499690-241499930(-)$1	240	122	126	12.0000
!!bb	chr8:145687993-145688245(-)$1	252	69	73	12.0000
iiii	chr2:128180680-128180964(+)$1	284	145	149	12.0000
BBFF	chr10:43892137-43892428(-)$1	291	16	20	12.0000
eeee	chr11:843223-843464(+)$1	241	8	12	12.0000
====	chr20:57267787-57268055(+)$1	268	5	9	12.0000
dddd	chrX:20284785-20285011(-)$1	226	4	8	12.0000
bb!!	chr19:1258141-1258355(+)$1	214	93	97	12.0000
eeee	chr15:93426587-93426861(+)$1	274	0	4	12.0000
cc::	chr12:121416273-121416507(-)$1	234	53	57	12.0000
ccrr	chr12:133405118-133405402(-)$1	284	147	151	12.0000
ddll	chr1:22379675-22379920(+)$1	245	16	20	12.0000
:ddd	chr19:42751653-42751886(-)$1	233	2	6	12.0000
[bbb	chr14:102786104-102786370(+)$1	266	56	60	12.0000
[ddd	chr19:2272816-2273083(+)$1	267	52	56	12.0000
::::	chr19:50816148-50816432(-)$1	284	43	47	12.0000
nnnn	chr2:240322196-240322449(-)$1	253	54	58	12.0000
ccc3	chr5:179921609-179921883(+)$1	274	174	178	12.0000
FFF{	chr19:45854463-45854706(-)$1	243	35	39	12.0000
eeea	chrX:20284811-20285050(-)$1	239	43	47	12.0000
bbee	chr2:42275202-42275460(+)$1	258	80	84	12.0000
gggl	chr16:69166620-69166896(+)$1	276	35	39	12.0000
dddd	chr19:50815984-50816227(-)$1	243	182	186	12.0000
[fff	chr13:114144563-114144864(-)$1	301	33	37	12.0000
eeee	chr1:12656074-12656320(-)$1	246	32	36	12.0000
gccc	chr13:45914973-45915237(-)$1	264	189	193	12.0000
bb>>	chr12:121416307-121416541(-)$1	234	87	91	12.0000
gggg	chr2:242447735-242448008(-)$1	273	57	61	12.0000
ffff	chr6:170123982-170124248(-)$1	266	76	80	12.0000
eebb	chr3:195635687-195635941(-)$1	254	12	16	12.0000
FFFF	chr16:4664270-4664496(-)$1	226	35	39	12.0000
hhhh	chr7:75544476-75544722(+)$1	246	65	69	12.0000
ffff	chr17:53499130-53499382(-)$1	252	56	60	12.0000
pfff	chr19:41770823-41771081(+)$1	258	31	35	12.0000
JJJJ	chr2:242592721-242592982(+)$1	261	36	40	12.0000
cccm	chr19:55899450-55899724(+)$1	274	152	156	12.0000
DDDD	chr20:62526428-62526677(+)$1	249	12	16	12.0000
HHHd	chr19:1473958-1474231(-)$1	273	19	23	12.0000
cc==	chr7:150777690-150777949(-)$1	259	121	125	12.0000
HHHH	chr19:56152446-56152693(+)$1	247	2	6	12.0000
pppc	chr20:62338443-62338694(-)$1	251	125	129	12.0000
hhhh	chr12:58005524-58005834(+)$1	310	70	74	12.0000
::::	chr17:80708899-80709159(+)$1	260	7	11	12.0000
!hhh	chr19:3062229-3062530(-)$1	301	140	144	12.0000
bbtt	chr14:24564482-24564725(+)$1	243	114	118	12.0000
:iii	chr2:20549951-20550293(-)$1	342	62	66	12.0000
E}JJ	chr6:150071249-150071500(+)$1	251	106	110	12.0000
Beee	chr17:43221243-43221508(+)$1	265	134	138	12.0000
ccbb	chr5:176873702-176874003(-)$1	301	9	13	12.0000
iiid	chr7:5085632-5085913(+)$1	281	55	59	12.0000
eeee	chr4:980578-980826(-)$1	248	145	149	12.0000
[ggg	chr9:99381561-99381829(-)$1	268	38	42	12.0000

#DB
((((	chr1:182360594-182360836(-)$1	1	2	6	12.0000
))))	chr20:57467330-57467613(+)$1	1	208	212	12.0000
((((	chr12:131356575-131356818(+)$1	1	113	117	12.0000
..))	chr8:11725101-11725348(-)$1	1	70	74	12.0000
))))	chr5:74162044-74162300(-)$1	1	179	183	12.0000
(((.	chr19:42788308-42788565(+)$1	1	18	22	12.0000
.(((	chr4:981675-981921(-)$1	1	23	27	12.0000
((.(	chr5:176981025-176981295(-)$1	1	2	6	12.0000
((((	chr17:7311430-7311681(+)$1	1	36	40	12.0000
.(((	chr6:151187465-151187749(+)$1	1	145	149	12.0000
.(((	chr3:48470510-48470774(-)$1	1	50	54	12.0000
((((	chr10:88853741-88853980(-)$1	1	23	27	12.0000
....	chr5:92920552-92920811(+)$1	1	49	53	12.0000
.)))	chr9:139743354-139743613(+)$1	1	201	205	12.0000
))))	chr5:92920398-92920634(+)$1	1	203	207	12.0000
((((	chr2:200323159-200323406(-)$1	1	128	132	12.0000
))))	chr8:12990686-12990934(-)$1	1	17	21	12.0000
((((	chr3:186502077-186502320(+)$1	1	12	16	12.0000
..((	chr16:87426130-87426483(+)$1	1	94	98	12.0000
.(((	chr8:12990823-12991137(-)$1	1	27	31	12.0000
.(((	chr17:73900659-73900953(-)$1	1	5	9	12.0000
....	chr8:8243852-8244099(-)$1	1	142	146	12.0000
.(((	chr3:48470766-48471031(-)$1	1	6	10	12.0000
((((	chr12:31477242-31477518(-)$1	1	4	8	12.0000
..((	chr2:196522009-196522311(+)$1	1	42	46	12.0000
....	chr12:131356824-131357101(+)$1	1	30	34	12.0000
((((	chr16:30537681-30537930(-)$1	1	14	18	12.0000
))).	chr19:1258096-1258316(+)$1	1	138	142	12.0000
((((	chr3:37903470-37903736(+)$1	1	22	26	12.0000
....	chr19:45323309-45323567(+)$1	1	27	31	12.0000
(((.	chr16:89627210-89627446(+)$1	1	24	28	12.0000
((((	chr10:977206-977511(-)$1	1	5	9	12.0000
((((	chr12:131356942-131357208(+)$1	1	5	9	12.0000
).))	chr10:74033745-74034033(+)$1	1	208	212	12.0000
((((	chr6:36164573-36164831(-)$1	1	32	36	12.0000
((((	chr1:2160039-2160323(+)$1	1	6	10	12.0000
))))	chr14:55255791-55256103(+)$1	1	241	245	12.0000
((((	chr16:4588150-4588444(-)$1	1	74	78	12.0000
((((	chr2:240322019-240322251(-)$1	1	53	57	12.0000
((((	chr16:8962296-8962588(-)$1	1	60	64	12.0000
((((	chr2:242447564-242447835(-)$1	1	35	39	12.0000
((((	chr8:144668923-144669173(-)$1	1	64	68	12.0000
((((	chr1:150595079-150595327(-)$1	1	12	16	12.0000
((..	chr2:241499690-241499930(-)$1	1	122	126	12.0000
..((	chr8:145687993-145688245(-)$1	1	69	73	12.0000
))))	chr2:128180680-128180964(+)$1	1	145	149	12.0000
((((	chr10:43892137-43892428(-)$1	1	16	20	12.0000
))))	chr11:843223-843464(+)$1	1	8	12	12.0000
((((	chr20:57267787-57268055(+)$1	1	5	9	12.0000
((((	chrX:20284785-20285011(-)$1	1	4	8	12.0000
((..	chr19:1258141-1258355(+)$1	1	93	97	12.0000
((((	chr15:93426587-93426861(+)$1	1	0	4	12.0000
))..	chr12:121416273-121416507(-)$1	1	53	57	12.0000
((..	chr12:133405118-133405402(-)$1	1	147	151	12.0000
((..	chr1:22379675-22379920(+)$1	1	16	20	12.0000
.(((	chr19:42751653-42751886(-)$1	1	2	6	12.0000
.(((	chr14:102786104-102786370(+)$1	1	56	60	12.0000
.(((	chr19:2272816-2273083(+)$1	1	52	56	12.0000
....	chr19:50816148-50816432(-)$1	1	43	47	12.0000
....	chr2:240322196-240322449(-)$1	1	54	58	12.0000
))).	chr5:179921609-179921883(+)$1	1	174	178	12.0000
(((.	chr19:45854463-45854706(-)$1	1	35	39	12.0000
((((	chrX:20284811-20285050(-)$1	1	43	47	12.0000
((((	chr2:42275202-42275460(+)$1	1	80	84	12.0000
(((.	chr16:69166620-69166896(+)$1	1	35	39	12.0000
((((	chr19:50815984-50816227(-)$1	1	182	186	12.0000
.(((	chr13:114144563-114144864(-)$1	1	33	37	12.0000
((((	chr1:12656074-12656320(-)$1	1	32	36	12.0000
))))	chr13:45914973-45915237(-)$1	1	189	193	12.0000
))..	chr12:121416307-121416541(-)$1	1	87	91	12.0000
((((	chr2:242447735-242448008(-)$1	1	57	61	12.0000
((((	chr6:170123982-170124248(-)$1	1	76	80	12.0000
))((	chr3:195635687-195635941(-)$1	1	12	16	12.0000
((((	chr16:4664270-4664496(-)$1	1	35	39	12.0000
((((	chr7:75544476-75544722(+)$1	1	65	69	12.0000
))))	chr17:53499130-53499382(-)$1	1	56	60	12.0000
.)))	chr19:41770823-41771081(+)$1	1	31	35	12.0000
((((	chr2:242592721-242592982(+)$1	1	36	40	12.0000
(((.	chr19:55899450-55899724(+)$1	1	152	156	12.0000
((((	chr20:62526428-62526677(+)$1	1	12	16	12.0000
((((	chr19:1473958-1474231(-)$1	1	19	23	12.0000
((((	chr7:150777690-150777949(-)$1	1	121	125	12.0000
((((	chr19:56152446-56152693(+)$1	1	2	6	12.0000
...)	chr20:62338443-62338694(-)$1	1	125	129	12.0000
((((	chr12:58005524-58005834(+)$1	1	70	74	12.0000
....	chr17:80708899-80709159(+)$1	1	7	11	12.0000
.(((	chr19:3062229-3062530(-)$1	1	140	144	12.0000
((..	chr14:24564482-24564725(+)$1	1	114	118	12.0000
.(((	chr2:20549951-20550293(-)$1	1	62	66	12.0000
).))	chr6:150071249-150071500(+)$1	1	106	110	12.0000
)(((	chr17:43221243-43221508(+)$1	1	134	138	12.0000
((((	chr5:176873702-176874003(-)$1	1	9	13	12.0000
)))(	chr7:5085632-5085913(+)$1	1	55	59	12.0000
))))	chr4:980578-980826(-)$1	1	145	149	12.0000
.(((	chr9:99381561-99381829(-)$1	1	38	42	12.0000

#PSSM
G : 0.77	g : 0.22	
C : 0.77	c : 0.22	
C : 0.78	c : 0.21	
C : 0.78	c : 0.21	

#score	1140.0000000000002
#seq	95
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_UTR_m3_run2.nuc.txt

#NT
cccgggcggcggg	chr3:48470635-48470946(-)$1	311	15	28	14.9803
GCUGGGAGCCCGG	chr17:80197785-80198011(+)$1	226	34	47	15.1764
GCGGGCGCUGGGG	chr2:196522006-196522374(+)$1	368	139	152	15.4705
CGGGGAGGGCGGG	chr14:32546366-32546621(+)$1	255	90	103	15.1764
GCGGGCGGCUUGG	chr22:20067762-20068006(+)$1	244	111	124	16.4509
GGGGGUGGCGGGG	chr19:41770840-41771087(+)$1	247	101	114	15.8627
GCGGGGGCACGGG	chr2:242707714-242707989(+)$1	275	109	122	20.1764
GCGGCCGCGCGGG	chr12:76477543-76477831(-)$1	288	68	81	16.1568
gcggacggccggg	chr6:32938570-32938797(+)$1	227	64	77	20.2745
gcgggcggcgggg	chr7:77166718-77166983(+)$1	265	98	111	21.0588
GCGGGCGGGCGGG	chr1:90308941-90309197(+)$1	256	4	17	23.7058
GCGGACCGGCGGG	chr3:184080669-184080945(+)$1	276	165	178	16.1568
ACCGGCGGCCGGG	chr2:101767639-101767902(-)$1	263	132	145	17.2352
GCUCGCGGCCGGG	chr17:74380188-74380434(+)$1	246	220	233	18.6078
GUGGGGGGAAGGG	chr17:7477044-7477302(+)$1	258	108	121	15.4705
GCGCGCGGCGGGG	chr17:79988815-79989107(+)$1	292	166	179	18.1176
GCUCGGGGCCCGG	chr2:232574480-232574742(+)$1	262	162	175	16.0588
GCGGGGGUGCGGG	chr5:179248449-179248705(+)$1	256	177	190	21.1568
gcggggggcggcg	chr16:53164967-53165230(+)$1	263	186	199	17.9215
CCUUGGGGUCGGG	chr3:49055820-49056130(-)$1	310	147	160	13.7058
GCGCGGGGCCGGG	chr12:19592491-19592784(+)$1	293	226	239	22.9215
GCAGGGGGCCCGG	chr22:41487787-41488063(+)$1	276	152	165	18.5098
gcuggggccuggg	chr19:34287185-34287454(+)$1	269	19	32	15.7647
gcggguggccgga	chr9:101558650-101558912(-)$1	262	42	55	18.6078
GCGCCGGGUCGGG	chr14:54421091-54421352(-)$1	261	230	243	16.6470
GCUGGGGGGCGGG	chr8:103424328-103424631(-)$1	303	106	119	22.1372
GAGGGGGCCCGGG	chr13:113863080-113863323(+)$1	243	37	50	18.3137
GCGGGGGCGCGCG	chr6:86352558-86352822(-)$1	264	114	127	17.1372
GCAGGGGUGCGGG	chr10:21785898-21786135(-)$1	237	100	113	17.7254
ACGGGCGGGCGGA	chr3:33481442-33481772(-)$1	330	18	31	15.3725
ucggggggugggg	chr16:447636-447883(+)$1	247	50	63	16.5490
gcgggccggcggg	chr17:36955684-36955937(-)$1	253	49	62	20.3725
UCUGGGGGCCGGG	chr19:42758625-42758927(-)$1	302	123	136	19.1960
gcggggaggcggg	chr1:36789188-36789463(+)$1	275	82	95	21.2549
GGGGGGCGCCGUG	chr20:57467338-57467615(+)$1	277	109	122	14.0000
CCGCGGGGCCGGG	chr3:49058440-49058713(-)$1	273	46	59	19.6862
gcggggggccggg	chr19:42788119-42788373(+)$1	254	1	14	25.8627
gcgggguggcggg	chr2:95825191-95825456(-)$1	265	35	48	21.1568
GGGGGGCGCUGGG	chr19:46142219-46142514(-)$1	295	72	85	14.8823
GCUCGGGGACGGG	chr2:242254384-242254628(-)$1	244	156	169	17.7254
gcgggagggcggg	chr17:36955634-36955874(-)$1	240	13	26	22.3333
GCAGGGGGCCCGG	chr22:41487714-41487983(+)$1	269	225	238	18.5098
gcgggcgggcggg	chr1:1284336-1284625(-)$1	289	102	115	23.7058
GCGGCCGGCCCGG	chr7:5569350-5569605(-)$1	255	177	190	16.4509
GCGGGCGGGCGGG	chr1:90308863-90309141(+)$1	278	82	95	23.7058
GCGCUGGGCCGGG	chr10:88516563-88516873(+)$1	310	264	277	18.6078
ccgggcgggcggg	chr6:170123967-170124242(-)$1	275	74	87	20.4705
ccgcggggccggg	chr2:27435069-27435327(+)$1	258	120	133	19.6862
GAGGGUCGGCGGG	chr14:23426056-23426318(-)$1	262	204	217	14.9803
CCGCGGGGCCGGG	chr3:49058551-49058770(-)$1	219	103	116	19.6862

#otherMatches

#Struct PSSM
bb[ffffff"""=	chr17:74380818-74381068(+)$1	250	125	138	19.0980
eeeennnnneeee	chr3:48470635-48470946(-)$1	311	15	28	14.9803
gggggmmmmgggg	chr17:80197785-80198011(+)$1	226	34	47	15.1764
::FFFFFF{HHHH	chr2:196522006-196522374(+)$1	368	139	152	15.4705
g$$$$$bb[bbqq	chr14:32546366-32546621(+)$1	255	90	103	15.1764
HHHHHHHHEEEEE	chr22:20067762-20068006(+)$1	244	111	124	16.4509
gggggg:FFFFFF	chr19:41770840-41771087(+)$1	247	101	114	15.8627
=====4444====	chr2:242707714-242707989(+)$1	275	109	122	20.1764
gggeeeee[eeee	chr12:76477543-76477831(-)$1	288	68	81	16.1568
BDDDD::gggggg	chr6:32938570-32938797(+)$1	227	64	77	20.2745
!a[ccc[dddd!!	chr7:77166718-77166983(+)$1	265	98	111	21.0588
DD{BB{CCCFFFF	chr1:90308941-90309197(+)$1	256	4	17	23.7058
g]a22abb]bbgg	chr3:184080669-184080945(+)$1	276	165	178	16.1568
!ddddllldddd3	chr2:101767639-101767902(-)$1	263	132	145	17.2352
GGGGBBDDDDYYH	chr17:74380188-74380434(+)$1	246	220	233	18.6078
:ggggggg[dddd	chr17:7477044-7477302(+)$1	258	108	121	15.4705
EEEEE{BB{EEEE	chr17:79988815-79989107(+)$1	292	166	179	18.1176
4444ffffffeee	chr2:232574480-232574742(+)$1	262	162	175	16.0588
ddmmmmdddd22a	chr5:179248449-179248705(+)$1	256	177	190	21.1568
IIII}CCC}EEEE	chr16:53164967-53165230(+)$1	263	186	199	17.9215
dd]cccffffffd	chr3:49055820-49056130(-)$1	310	147	160	13.7058
ccnnnnnccc22i	chr12:19592491-19592784(+)$1	293	226	239	22.9215
dd:ffffff!!dd	chr22:41487787-41488063(+)$1	276	152	165	18.5098
dddd[dddd[ddd	chr19:34287185-34287454(+)$1	269	19	32	15.7647
ccnnnnnccc]a4	chr9:101558650-101558912(-)$1	262	42	55	18.6078
}DDDD:ggggggg	chr14:54421091-54421352(-)$1	261	230	243	16.6470
CCC{BB{FFFFFF	chr8:103424328-103424631(-)$1	303	106	119	22.1372
333bb22ccceee	chr13:113863080-113863323(+)$1	243	37	50	18.3137
ff[a[cccccc[b	chr6:86352558-86352822(-)$1	264	114	127	17.1372
EE::dddd[bbgg	chr10:21785898-21786135(-)$1	237	100	113	17.7254
::hhhhhhhhnnn	chr3:33481442-33481772(-)$1	330	18	31	15.3725
CCKKGGGGGGG{B	chr16:447636-447883(+)$1	247	50	63	16.5490
cc]a]bb]dddd2	chr17:36955684-36955937(-)$1	253	49	62	20.3725
SJJJJJJJJJJLL	chr19:42758625-42758927(-)$1	302	123	136	19.1960
CC{CCC{FFFFFF	chr1:36789188-36789463(+)$1	275	82	95	21.2549
::::::ddddnnn	chr20:57467338-57467615(+)$1	277	109	122	14.0000
eeee"""bblllb	chr3:49058440-49058713(-)$1	273	46	59	19.6862
CCCNNNNNDDDD:	chr19:42788119-42788373(+)$1	254	1	14	25.8627
NNEEEEE{A{EEE	chr2:95825191-95825456(-)$1	265	35	48	21.1568
eeeee55555fff	chr19:46142219-46142514(-)$1	295	72	85	14.8823
eeeeEEEEE}BB}	chr2:242254384-242254628(-)$1	244	156	169	17.7254
DDDDKKFFFFFF{	chr17:36955634-36955874(-)$1	240	13	26	22.3333
BB:ffffff!!dd	chr22:41487714-41487983(+)$1	269	225	238	18.5098
ddd[a[eeeeenn	chr1:1284336-1284625(-)$1	289	102	115	23.7058
ee:HHHHHHHH}F	chr7:5569350-5569605(-)$1	255	177	190	16.4509
a!!a[bbbb[bbf	chr1:90308863-90309141(+)$1	278	82	95	23.7058
mmddddddddccc	chr10:88516563-88516873(+)$1	310	264	277	18.6078
ff!!bboooooob	chr6:170123967-170124242(-)$1	275	74	87	20.4705
DD{FFFFFFAFFF	chr2:27435069-27435327(+)$1	258	120	133	19.6862
DDDD}DDDD}DDD	chr14:23426056-23426318(-)$1	262	204	217	14.9803
eeee"""gggggg	chr3:49058551-49058770(-)$1	219	103	116	19.6862

#DB
((.((((((...(	chr17:74380818-74381068(+)$1	1	125	138	19.0980
((((.....))))	chr3:48470635-48470946(-)$1	1	15	28	14.9803
(((((....))))	chr17:80197785-80198011(+)$1	1	34	47	15.1764
..((((((.((((	chr2:196522006-196522374(+)$1	1	139	152	15.4705
(.....((.((..	chr14:32546366-32546621(+)$1	1	90	103	15.1764
))))))))(((((	chr22:20067762-20068006(+)$1	1	111	124	16.4509
)))))).((((((	chr19:41770840-41771087(+)$1	1	101	114	15.8627
)))))....))))	chr2:242707714-242707989(+)$1	1	109	122	20.1764
)))(((((.((((	chr12:76477543-76477831(-)$1	1	68	81	16.1568
(((((..((((((	chr6:32938570-32938797(+)$1	1	64	77	20.2745
.(.(((.((((..	chr7:77166718-77166983(+)$1	1	98	111	21.0588
((.((.(((((((	chr1:90308941-90309197(+)$1	1	4	17	23.7058
).)..))).))))	chr3:184080669-184080945(+)$1	1	165	178	16.1568
.((((...)))).	chr2:101767639-101767902(-)$1	1	132	145	17.2352
))))))))))..)	chr17:74380188-74380434(+)$1	1	220	233	18.6078
.(((((((.((((	chr17:7477044-7477302(+)$1	1	108	121	15.4705
(((((.((.((((	chr17:79988815-79989107(+)$1	1	166	179	18.1176
....))))))(((	chr2:232574480-232574742(+)$1	1	162	175	16.0588
((....))))..)	chr5:179248449-179248705(+)$1	1	177	190	21.1568
)))).))).))))	chr16:53164967-53165230(+)$1	1	186	199	17.9215
)).))))))))))	chr3:49055820-49056130(-)$1	1	147	160	13.7058
((.....)))..)	chr12:19592491-19592784(+)$1	1	226	239	22.9215
)).((((((..((	chr22:41487787-41488063(+)$1	1	152	165	18.5098
((((.((((.(((	chr19:34287185-34287454(+)$1	1	19	32	15.7647
((.....))).).	chr9:101558650-101558912(-)$1	1	42	55	18.6078
.)))).(((((((	chr14:54421091-54421352(-)$1	1	230	243	16.6470
(((.((.((((((	chr8:103424328-103424631(-)$1	1	106	119	22.1372
...))..)))(((	chr13:113863080-113863323(+)$1	1	37	50	18.3137
((.(.((((((.(	chr6:86352558-86352822(-)$1	1	114	127	17.1372
((..((((.((((	chr10:21785898-21786135(-)$1	1	100	113	17.7254
..((((((((...	chr3:33481442-33481772(-)$1	1	18	31	15.3725
((..(((((((.(	chr16:447636-447883(+)$1	1	50	63	16.5490
)).).)).)))).	chr17:36955684-36955937(-)$1	1	49	62	20.3725
.((((((((((..	chr19:42758625-42758927(-)$1	1	123	136	19.1960
((.(((.((((((	chr1:36789188-36789463(+)$1	1	82	95	21.2549
......((((...	chr20:57467338-57467615(+)$1	1	109	122	14.0000
((((...((...)	chr3:49058440-49058713(-)$1	1	46	59	19.6862
(((.....((((.	chr19:42788119-42788373(+)$1	1	1	14	25.8627
..(((((.(.(((	chr2:95825191-95825456(-)$1	1	35	48	21.1568
))))).....)))	chr19:46142219-46142514(-)$1	1	72	85	14.8823
))))))))).)).	chr2:242254384-242254628(-)$1	1	156	169	17.7254
((((..((((((.	chr17:36955634-36955874(-)$1	1	13	26	22.3333
)).((((((..((	chr22:41487714-41487983(+)$1	1	225	238	18.5098
(((.(.(((((..	chr1:1284336-1284625(-)$1	1	102	115	23.7058
)).)))))))).)	chr7:5569350-5569605(-)$1	1	177	190	16.4509
(..(.((((.(((	chr1:90308863-90309141(+)$1	1	82	95	23.7058
..))))))))(((	chr10:88516563-88516873(+)$1	1	264	277	18.6078
((..((......)	chr6:170123967-170124242(-)$1	1	74	87	20.4705
((.((((((((((	chr2:27435069-27435327(+)$1	1	120	133	19.6862
)))).)))).)))	chr14:23426056-23426318(-)$1	1	204	217	14.9803
((((...((((((	chr3:49058551-49058770(-)$1	1	103	116	19.6862

#PSSM
G : 0.56	g : 0.21	C : 0.07	c : 0.05	A : 0.03	u : 0.01	U : 0.01	
C : 0.56	c : 0.29	G : 0.07	A : 0.03	U : 0.01	
G : 0.49	g : 0.25	U : 0.13	A : 0.05	c : 0.01	C : 0.01	u : 0.01	
G : 0.50	g : 0.27	C : 0.17	U : 0.01	c : 0.01	
G : 0.60	g : 0.27	C : 0.05	a : 0.01	A : 0.01	U : 0.01	
G : 0.43	C : 0.21	g : 0.15	c : 0.09	U : 0.03	A : 0.01	u : 0.01	a : 0.01	
G : 0.58	g : 0.21	C : 0.09	c : 0.03	A : 0.01	a : 0.01	u : 0.01	
G : 0.54	g : 0.27	C : 0.11	U : 0.03	c : 0.01	
C : 0.37	G : 0.21	g : 0.13	c : 0.13	U : 0.05	A : 0.05	u : 0.01	
C : 0.58	c : 0.21	G : 0.05	g : 0.05	U : 0.03	A : 0.01	u : 0.01	
G : 0.58	g : 0.29	C : 0.09	U : 0.01	
G : 0.66	g : 0.27	c : 0.01	C : 0.01	U : 0.01	
G : 0.68	g : 0.27	a : 0.01	A : 0.01	

#score	939.9803921568632
#seq	51
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_CDS_m3_run2.nuc.txt

#NT
GGCCGGGUGG	chr19:49990766-49991003(+)$1	237	167	177	15.5660
GGCUGUGGAG	chr16:88729360-88729637(-)$1	277	115	125	13.8679
GGCUGUGUGG	chr16:75018806-75019087(-)$1	281	85	95	14.3396
cgccgugggg	chr16:30134333-30134598(-)$1	265	29	39	16.2264
GGAGGUGGGG	chr17:73839682-73839943(-)$1	261	96	106	12.8301
GGCCGUGGAC	chr19:50180394-50180674(+)$1	280	52	62	12.9245
GGCCGCGGCG	chr1:153930840-153931111(-)$1	271	78	88	15.6603
GACCGCGGGG	chr5:133707165-133707394(+)$1	229	99	109	15.0943
GGCCGUGGCG	chr20:35724171-35724500(-)$1	329	136	146	16.7924
GGCCGUGUGC	chr6:26217073-26217318(+)$1	245	213	223	13.3962
GGCCUGGCGG	chr15:101835271-101835546(-)$1	275	25	35	11.6037
GUCCGCGGGG	chr1:155904033-155904290(-)$1	257	128	138	15.2830
GCCCGGGGGG	chr11:67810665-67810942(+)$1	277	102	112	14.6226
GGCCGUGGGA	chr1:40626956-40627284(+)$1	328	103	113	16.3207
GGCGGCUGGG	chr11:62341201-62341432(-)$1	231	120	130	11.9811
GGCAGGGAGG	chr7:128491192-128491450(+)$1	258	3	13	11.9811
GGCCCUGAGG	chr2:98262433-98262715(+)$1	282	160	170	12.7358
GUCCGCGGGG	chr10:101379907-101380260(-)$1	353	32	42	15.2830
GUCUGUGGGG	chr6:166755853-166756149(-)$1	296	93	103	13.3962
GGGCGUGCGG	chr7:158622049-158622304(-)$1	255	77	87	13.6792
GGCCGUGGAG	chr8:37756810-37757066(-)$1	256	47	57	16.8867
GCCGGUGGGG	chr11:85779704-85780015(-)$1	311	87	97	13.2075
GGCCAUGGUG	chr3:183602431-183602779(-)$1	348	118	128	12.3584
GGCCGGGAGG	chr19:12845270-12845568(-)$1	298	130	140	15.4716
GGCCGCGGGA	chr17:56084378-56084706(-)$1	328	112	122	15.1886
ggccgggggc	chr8:30669827-30670092(-)$1	265	80	90	14.7169
GGCCGUGGUG	chr3:122785815-122786174(+)$1	359	100	110	16.8867
GGCCGUGUGG	chr15:91537544-91537831(-)$1	287	131	141	17.3584
GGCCUCGGGG	chr16:447202-447481(+)$1	279	216	226	14.9056
AGCCGUGCGG	chr12:49524976-49525276(-)$1	300	203	213	13.3962
CGCUGUGGGG	chr17:55333991-55334261(+)$1	270	63	73	13.2075
GGGCGUGGUG	chr2:170440775-170441069(+)$1	294	18	28	12.7358
GGCGGUUGGG	chr2:85769648-85769932(+)$1	284	84	94	13.1132
GGCCGUGGGG	chr4:129208779-129209059(-)$1	280	54	64	20.4716
GGCCGAGGGG	chr16:28962291-28962545(+)$1	254	92	102	18.2075
ggcggcgggg	chr19:6739607-6739900(+)$1	293	113	123	16.1320
GGCUGUUGGG	chr11:46822726-46822974(-)$1	248	182	192	13.3018
GGCCGGGGUG	chr19:18547571-18547847(-)$1	276	80	90	15.0943
GGCCGCGGGU	chr5:137688338-137688618(+)$1	280	42	52	15.0943
GGCCGCCCGG	chr12:56693895-56694180(-)$1	285	212	222	12.5471
GGCCGUGCGG	chr7:99686488-99686804(+)$1	316	207	217	17.8301
GGCCGUCGGG	chr16:18812646-18812968(-)$1	322	44	54	16.3207
GGCUGAGGGG	chr12:56435825-56436138(+)$1	313	205	215	15.1886
GCCCGCGCGG	chr1:231114754-231115043(+)$1	289	12	22	12.6415
ggccgagcgg	chr7:44887469-44887718(-)$1	249	116	126	15.5660
GGCCGCGGGG	chr1:201798183-201798499(+)$1	316	121	131	19.3396
GGGCGUGGGC	chr1:12089620-12089925(+)$1	305	32	42	12.3584
cgccgcgcgg	chr16:2587900-2588217(+)$1	317	47	57	12.4528
GGCCGCGGAG	chr1:202976424-202976705(+)$1	281	109	119	15.7547
gggcguggcg	chr1:894494-894738(-)$1	244	10	20	12.6415
UGCUGUGGGG	chr16:3767366-3767623(-)$1	257	139	149	13.0188
GGCAGCGCGG	chr16:4664693-4664967(-)$1	274	152	162	13.2075

#otherMatches

#Struct PSSM
[dddd[bb[a	chr9:101558621-101558914(-)$1	293	98	108	14.5283
ee!!eeeee[	chr19:49990766-49991003(+)$1	237	167	177	15.5660
gggg"""ccc	chr16:88729360-88729637(-)$1	277	115	125	13.8679
chhhhhhhhl	chr16:75018806-75019087(-)$1	281	85	95	14.3396
hhhhhh[a''	chr16:30134333-30134598(-)$1	265	29	39	16.2264
EDDDD}GGGG	chr17:73839682-73839943(-)$1	261	96	106	12.8301
ffffffiiii	chr19:50180394-50180674(+)$1	280	52	62	12.9245
:hhhhhhhhm	chr1:153930840-153931111(-)$1	271	78	88	15.6603
^^eeeee]cc	chr5:133707165-133707394(+)$1	229	99	109	15.0943
EEEKKDDDDD	chr20:35724171-35724500(-)$1	329	136	146	16.7924
c]ccc]bb33	chr6:26217073-26217318(+)$1	245	213	223	13.3962
ppppp=====	chr15:101835271-101835546(-)$1	275	25	35	11.6037
dddcccnnnn	chr1:155904033-155904290(-)$1	257	128	138	15.2830
dddd:HHHHH	chr11:67810665-67810942(+)$1	277	102	112	14.6226
cccffffff:	chr1:40626956-40627284(+)$1	328	103	113	16.3207
nnnbb]bbgg	chr11:62341201-62341432(-)$1	231	120	130	11.9811
{CCC{CCCMM	chr7:128491192-128491450(+)$1	258	3	13	11.9811
$$$$ccc[ee	chr2:98262433-98262715(+)$1	282	160	170	12.7358
eeeee[ffff	chr10:101379907-101380260(-)$1	353	32	42	15.2830
oooobb]ccc	chr6:166755853-166756149(-)$1	296	93	103	13.3962
IIIIDDDDdd	chr7:158622049-158622304(-)$1	255	77	87	13.6792
e[bbnnnnnb	chr8:37756810-37757066(-)$1	256	47	57	16.8867
ccc]bb]bb5	chr11:85779704-85780015(-)$1	311	87	97	13.2075
qccc:::::E	chr3:183602431-183602779(-)$1	348	118	128	12.3584
qqqqqqiiii	chr19:12845270-12845568(-)$1	298	130	140	15.4716
dd4444gggg	chr17:56084378-56084706(-)$1	328	112	122	15.1886
3dddd22a]e	chr8:30669827-30670092(-)$1	265	80	90	14.7169
BBgggggggn	chr3:122785815-122786174(+)$1	359	100	110	16.8867
ggggggg[bb	chr15:91537544-91537831(-)$1	287	131	141	17.3584
mmmbb]dddd	chr16:447202-447481(+)$1	279	216	226	14.9056
oeeeeea]dd	chr12:49524976-49525276(-)$1	300	203	213	13.3962
dcccmmmmcc	chr17:55333991-55334261(+)$1	270	63	73	13.2075
::BBKKHHHH	chr2:170440775-170441069(+)$1	294	18	28	12.7358
a]dddd:::F	chr2:85769648-85769932(+)$1	284	84	94	13.1132
dddddddd]a	chr4:129208779-129209059(-)$1	280	54	64	20.4716
ggggg####e	chr16:28962291-28962545(+)$1	254	92	102	18.2075
EEEEE{DDDD	chr19:6739607-6739900(+)$1	293	113	123	16.1320
d!!eeeee!!	chr11:46822726-46822974(-)$1	248	182	192	13.3018
ggggggg!!a	chr19:18547571-18547847(-)$1	276	80	90	15.0943
]eeeee]bb:	chr5:137688338-137688618(+)$1	280	42	52	15.0943
dd]bbadddd	chr12:56693895-56694180(-)$1	285	212	222	12.5471
nccciiiiii	chr7:99686488-99686804(+)$1	316	207	217	17.8301
HHHHH::ccc	chr16:18812646-18812968(-)$1	322	44	54	16.3207
ffccc]dddd	chr12:56435825-56436138(+)$1	313	205	215	15.1886
::FFFFFFee	chr1:231114754-231115043(+)$1	289	12	22	12.6415
]eeeee]aBB	chr7:44887469-44887718(-)$1	249	116	126	15.5660
eBBCCC}CCC	chr1:201798183-201798499(+)$1	316	121	131	19.3396
ccc]dddd::	chr1:12089620-12089925(+)$1	305	32	42	12.3584
======[app	chr16:2587900-2588217(+)$1	317	47	57	12.4528
ffffffhhhh	chr1:202976424-202976705(+)$1	281	109	119	15.7547
{CCC{A{BBK	chr1:894494-894738(-)$1	244	10	20	12.6415
[bb"""hhhh	chr16:3767366-3767623(-)$1	257	139	149	13.0188
DDD:ddddmm	chr16:4664693-4664967(-)$1	274	152	162	13.2075

#DB
.((((.((.(	chr9:101558621-101558914(-)$1	1	98	108	14.5283
((..(((((.	chr19:49990766-49991003(+)$1	1	167	177	15.5660
((((...(((	chr16:88729360-88729637(-)$1	1	115	125	13.8679
)((((((((.	chr16:75018806-75019087(-)$1	1	85	95	14.3396
((((((.(..	chr16:30134333-30134598(-)$1	1	29	39	16.2264
))))).))))	chr17:73839682-73839943(-)$1	1	96	106	12.8301
((((((((((	chr19:50180394-50180674(+)$1	1	52	62	12.9245
.((((((((.	chr1:153930840-153931111(-)$1	1	78	88	15.6603
..))))).))	chr5:133707165-133707394(+)$1	1	99	109	15.0943
(((..(((((	chr20:35724171-35724500(-)$1	1	136	146	16.7924
).))).))..	chr6:26217073-26217318(+)$1	1	213	223	13.3962
.....)))))	chr15:101835271-101835546(-)$1	1	25	35	11.6037
((((((....	chr1:155904033-155904290(-)$1	1	128	138	15.2830
)))).(((((	chr11:67810665-67810942(+)$1	1	102	112	14.6226
))))))))).	chr1:40626956-40627284(+)$1	1	103	113	16.3207
...)).))((	chr11:62341201-62341432(-)$1	1	120	130	11.9811
.(((.(((..	chr7:128491192-128491450(+)$1	1	3	13	11.9811
....(((.((	chr2:98262433-98262715(+)$1	1	160	170	12.7358
(((((.((((	chr10:101379907-101380260(-)$1	1	32	42	15.2830
....)).)))	chr6:166755853-166756149(-)$1	1	93	103	13.3962
((((((((((	chr7:158622049-158622304(-)$1	1	77	87	13.6792
(.((.....)	chr8:37756810-37757066(-)$1	1	47	57	16.8867
))).)).)).	chr11:85779704-85780015(-)$1	1	87	97	13.2075
.))).....(	chr3:183602431-183602779(-)$1	1	118	128	12.3584
......))))	chr19:12845270-12845568(-)$1	1	130	140	15.4716
))....))))	chr17:56084378-56084706(-)$1	1	112	122	15.1886
.))))..).)	chr8:30669827-30670092(-)$1	1	80	90	14.7169
))(((((((.	chr3:122785815-122786174(+)$1	1	100	110	16.8867
(((((((.((	chr15:91537544-91537831(-)$1	1	131	141	17.3584
...)).))))	chr16:447202-447481(+)$1	1	216	226	14.9056
.)))))).))	chr12:49524976-49525276(-)$1	1	203	213	13.3962
((((....))	chr17:55333991-55334261(+)$1	1	63	73	13.2075
..((..((((	chr2:170440775-170441069(+)$1	1	18	28	12.7358
).))))...)	chr2:85769648-85769932(+)$1	1	84	94	13.1132
)))))))).)	chr4:129208779-129209059(-)$1	1	54	64	20.4716
(((((....(	chr16:28962291-28962545(+)$1	1	92	102	18.2075
(((((.((((	chr19:6739607-6739900(+)$1	1	113	123	16.1320
(..(((((..	chr11:46822726-46822974(-)$1	1	182	192	13.3018
(((((((..(	chr19:18547571-18547847(-)$1	1	80	90	15.0943
.))))).)).	chr5:137688338-137688618(+)$1	1	42	52	15.0943
)).)))))))	chr12:56693895-56694180(-)$1	1	212	222	12.5471
.)))((((((	chr7:99686488-99686804(+)$1	1	207	217	17.8301
(((((..(((	chr16:18812646-18812968(-)$1	1	44	54	16.3207
))))).))))	chr12:56435825-56436138(+)$1	1	205	215	15.1886
..((((((((	chr1:231114754-231115043(+)$1	1	12	22	12.6415
.))))).)((	chr7:44887469-44887718(-)$1	1	116	126	15.5660
)))))).)))	chr1:201798183-201798499(+)$1	1	121	131	19.3396
))).))))..	chr1:12089620-12089925(+)$1	1	32	42	12.3584
((((((.(..	chr16:2587900-2588217(+)$1	1	47	57	12.4528
))))))((((	chr1:202976424-202976705(+)$1	1	109	119	15.7547
.(((.(.((.	chr1:894494-894738(-)$1	1	10	20	12.6415
.((...((((	chr16:3767366-3767623(-)$1	1	139	149	13.0188
(((.((((..	chr16:4664693-4664967(-)$1	1	152	162	13.2075

#PSSM
G : 0.81	g : 0.09	c : 0.03	A : 0.01	C : 0.01	U : 0.01	
G : 0.73	g : 0.13	U : 0.05	C : 0.05	A : 0.01	
C : 0.79	c : 0.11	G : 0.05	A : 0.01	g : 0.01	
C : 0.62	U : 0.13	c : 0.11	G : 0.07	A : 0.03	g : 0.01	
G : 0.79	g : 0.13	U : 0.03	C : 0.01	A : 0.01	
U : 0.47	C : 0.24	G : 0.11	g : 0.03	u : 0.03	A : 0.03	c : 0.03	a : 0.01	
G : 0.77	g : 0.11	U : 0.05	C : 0.03	c : 0.01	
G : 0.60	C : 0.13	g : 0.09	U : 0.07	A : 0.05	c : 0.03	
G : 0.67	g : 0.11	A : 0.07	U : 0.07	C : 0.03	c : 0.01	
G : 0.75	g : 0.11	C : 0.05	A : 0.03	c : 0.01	U : 0.01	

#score	774.7169811320751
#seq	53
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_transcript_m1_run2.nuc.txt

#NT
ggga	chr20:57467366-57467606(+)$1	240	30	34	11.9999
GGGA	chr9:137251748-137252013(+)$1	265	11	15	11.9999
GGGA	chr11:2152432-2152638(-)$1	206	199	203	11.9999
ggga	chr16:88584206-88584454(+)$1	248	170	174	11.9999
GGGA	chr9:136718561-136718834(-)$1	273	8	12	11.9999
GGGA	chr16:50632829-50633070(+)$1	241	75	79	11.9999
GGGA	chr14:31066655-31066944(+)$1	289	56	60	11.9999
GGGA	chr22:35738478-35738726(+)$1	248	2	6	11.9999
GGGA	chr7:158124814-158125100(-)$1	286	274	278	11.9999
GGGA	chr7:23454395-23454657(-)$1	262	5	9	11.9999
GGGA	chr19:49607531-49607784(+)$1	253	50	54	11.9999
GGGA	chrX:153991183-153991478(+)$1	295	118	122	11.9999
GGGA	chr11:2152111-2152316(-)$1	205	168	172	11.9999
GGGA	chr17:62501970-62502230(-)$1	260	27	31	11.9999
GGGA	chr1:1280121-1280414(-)$1	293	111	115	11.9999
GGGA	chr19:2270125-2270381(+)$1	256	28	32	11.9999
GGGA	chr5:147778546-147778806(+)$1	260	131	135	11.9999
GGGA	chr16:88541643-88541900(+)$1	257	53	57	11.9999
GGGA	chr5:176516694-176516909(+)$1	215	16	20	11.9999
GGGA	chr1:11082619-11082860(+)$1	241	1	5	11.9999
GGGA	chr3:197677126-197677393(+)$1	267	95	99	11.9999
ggga	chr21:46862968-46863230(+)$1	262	168	172	11.9999
GGGA	chr11:65190373-65190600(+)$1	227	60	64	11.9999
GGGA	chr9:136799932-136800231(-)$1	299	111	115	11.9999
GGGA	chr21:46864205-46864487(+)$1	282	77	81	11.9999
GGGA	chr11:2153380-2153601(-)$1	221	20	24	11.9999
GGGA	chr20:60897492-60897732(-)$1	240	60	64	11.9999
GGGA	chr2:201172230-201172483(+)$1	253	35	39	11.9999
GGGA	chr1:21102933-21103206(-)$1	273	59	63	11.9999
GGGA	chr11:70481997-70482252(-)$1	255	36	40	11.9999
GGGA	chr13:113767594-113767869(+)$1	275	248	252	11.9999
ggga	chr6:2377905-2378155(+)$1	250	137	141	11.9999
GGGA	chr11:705663-705929(-)$1	266	23	27	11.9999
GGGA	chr20:31061941-31062244(-)$1	303	54	58	11.9999
GGGA	chr7:933378-933633(+)$1	255	54	58	11.9999
GGGA	chr2:241468160-241468407(-)$1	247	112	116	11.9999
GGGA	chr14:58764503-58764771(-)$1	268	134	138	11.9999
GGGA	chr11:126146117-126146386(+)$1	269	115	119	11.9999
GGGA	chr21:44081852-44082117(+)$1	265	144	148	11.9999
GGGA	chr3:49052723-49052983(+)$1	260	57	61	11.9999
GGGA	chr11:62293237-62293473(-)$1	236	167	171	11.9999
GGGA	chr9:19380013-19380256(-)$1	243	103	107	11.9999
GGGA	chr5:74633090-74633365(+)$1	275	75	79	11.9999
GGGA	chr6:136597300-136597534(-)$1	234	67	71	11.9999
GGGA	chr2:235878709-235878939(+)$1	230	157	161	11.9999
GGGA	chr7:158379684-158379936(-)$1	252	27	31	11.9999
GGGA	chr22:47537485-47537877(+)$1	392	289	293	11.9999
GGGA	chr17:94502-94754(-)$1	252	151	155	11.9999
GGGA	chr19:4036780-4037067(+)$1	287	282	286	11.9999
ggga	chr17:70549577-70549829(-)$1	252	7	11	11.9999
GGGA	chr7:2688535-2688799(+)$1	264	98	102	11.9999
ggga	chr16:50630960-50631239(+)$1	279	9	13	11.9999
ggga	chr16:9185498-9185744(+)$1	246	80	84	11.9999
GGGA	chr1:227167664-227167925(+)$1	261	35	39	11.9999
ggga	chr17:75464936-75465194(+)$1	258	2	6	11.9999
GGGA	chr16:8958685-8958931(-)$1	246	108	112	11.9999
GGGA	chr19:1645917-1646194(-)$1	277	32	36	11.9999
GGGA	chr2:11725348-11725579(+)$1	231	33	37	11.9999
GGGA	chr7:47406698-47406955(-)$1	257	6	10	11.9999
GGGA	chr16:30093852-30094117(+)$1	265	38	42	11.9999
GGGA	chr9:136796438-136796718(-)$1	280	27	31	11.9999
ggga	chr3:126255400-126255670(+)$1	270	108	112	11.9999
GGGA	chr21:44887409-44887686(-)$1	277	221	225	11.9999
GGGA	chr11:2152342-2152549(-)$1	207	110	114	11.9999
GGGA	chr11:65190361-65190573(+)$1	212	72	76	11.9999
GGGA	chr17:79670534-79670865(+)$1	331	77	81	11.9999
GGGA	chr7:73020934-73021198(-)$1	264	16	20	11.9999
GGGA	chr3:9861807-9862063(+)$1	256	51	55	11.9999
GGGA	chr11:2152422-2152626(-)$1	204	187	191	11.9999
GGGA	chr2:230672153-230672502(-)$1	349	134	138	11.9999
GGGA	chr9:136800455-136800695(-)$1	240	43	47	11.9999
GGGA	chr3:49823532-49823834(-)$1	302	13	17	11.9999
GGGA	chr3:194829973-194830270(-)$1	297	216	220	11.9999
GGGA	chr21:46858427-46858681(+)$1	254	84	88	11.9999
ggga	chr1:23750217-23750512(-)$1	295	91	95	11.9999
ggga	chr9:136652756-136653038(-)$1	282	161	165	11.9999
GGGA	chr17:70557394-70557674(-)$1	280	20	24	11.9999
GGGA	chr17:75303490-75303771(+)$1	281	30	34	11.9999
GGGA	chr19:54970868-54971104(+)$1	236	56	60	11.9999
GGGA	chr17:74717887-74718155(-)$1	268	244	248	11.9999
GGGA	chr16:31196434-31196668(+)$1	234	85	89	11.9999
GGGA	chr9:136773294-136773567(-)$1	273	5	9	11.9999
ggga	chr8:57829613-57829849(+)$1	236	162	166	11.9999
GGGA	chr19:7663267-7663516(+)$1	249	36	40	11.9999
GGGA	chr6:43745802-43746073(+)$1	271	15	19	11.9999
GGGA	chr12:123997906-123998195(-)$1	289	90	94	11.9999
GGGA	chr11:2153347-2153572(-)$1	225	88	92	11.9999
GGGA	chr20:32877954-32878216(-)$1	262	116	120	11.9999
GGGA	chr1:249151582-249151903(-)$1	321	33	37	11.9999

#otherMatches

#Struct PSSM
fbb[	chr7:1924030-1924281(-)$1	251	101	105	11.9999
^^^^	chr20:57467366-57467606(+)$1	240	30	34	11.9999
hhh"	chr9:137251748-137252013(+)$1	265	11	15	11.9999
eeee	chr11:2152432-2152638(-)$1	206	199	203	11.9999
hhmm	chr16:88584206-88584454(+)$1	248	170	174	11.9999
D{AK	chr9:136718561-136718834(-)$1	273	8	12	11.9999
oooo	chr16:50632829-50633070(+)$1	241	75	79	11.9999
HHHH	chr14:31066655-31066944(+)$1	289	56	60	11.9999
DDEE	chr22:35738478-35738726(+)$1	248	2	6	11.9999
====	chr7:158124814-158125100(-)$1	286	274	278	11.9999
bb!!	chr7:23454395-23454657(-)$1	262	5	9	11.9999
ddd[	chr19:49607531-49607784(+)$1	253	50	54	11.9999
ffff	chrX:153991183-153991478(+)$1	295	118	122	11.9999
eeem	chr11:2152111-2152316(-)$1	205	168	172	11.9999
{A{B	chr17:62501970-62502230(-)$1	260	27	31	11.9999
qqqq	chr1:1280121-1280414(-)$1	293	111	115	11.9999
hhmm	chr19:2270125-2270381(+)$1	256	28	32	11.9999
FFFF	chr5:147778546-147778806(+)$1	260	131	135	11.9999
rrrr	chr16:88541643-88541900(+)$1	257	53	57	11.9999
EE{C	chr5:176516694-176516909(+)$1	215	16	20	11.9999
ffff	chr1:11082619-11082860(+)$1	241	1	5	11.9999
EEEE	chr3:197677126-197677393(+)$1	267	95	99	11.9999
f]a]	chr21:46862968-46863230(+)$1	262	168	172	11.9999
hhhh	chr11:65190373-65190600(+)$1	227	60	64	11.9999
bb!!	chr9:136799932-136800231(-)$1	299	111	115	11.9999
E{AL	chr21:46864205-46864487(+)$1	282	77	81	11.9999
dddd	chr11:2153380-2153601(-)$1	221	20	24	11.9999
ff!!	chr20:60897492-60897732(-)$1	240	60	64	11.9999
qqqq	chr2:201172230-201172483(+)$1	253	35	39	11.9999
ddGG	chr1:21102933-21103206(-)$1	273	59	63	11.9999
::::	chr11:70481997-70482252(-)$1	255	36	40	11.9999
eeee	chr13:113767594-113767869(+)$1	275	248	252	11.9999
lbb]	chr6:2377905-2378155(+)$1	250	137	141	11.9999
dddd	chr11:705663-705929(-)$1	266	23	27	11.9999
gggg	chr20:31061941-31062244(-)$1	303	54	58	11.9999
]bbb	chr7:933378-933633(+)$1	255	54	58	11.9999
::FF	chr2:241468160-241468407(-)$1	247	112	116	11.9999
IIII	chr14:58764503-58764771(-)$1	268	134	138	11.9999
dbb[	chr11:126146117-126146386(+)$1	269	115	119	11.9999
0000	chr21:44081852-44082117(+)$1	265	144	148	11.9999
xxxx	chr3:49052723-49052983(+)$1	260	57	61	11.9999
ccc[	chr11:62293237-62293473(-)$1	236	167	171	11.9999
dddd	chr9:19380013-19380256(-)$1	243	103	107	11.9999
gggg	chr5:74633090-74633365(+)$1	275	75	79	11.9999
::::	chr6:136597300-136597534(-)$1	234	67	71	11.9999
aooo	chr2:235878709-235878939(+)$1	230	157	161	11.9999
ssss	chr7:158379684-158379936(-)$1	252	27	31	11.9999
ddde	chr22:47537485-47537877(+)$1	392	289	293	11.9999
====	chr17:94502-94754(-)$1	252	151	155	11.9999
CCC:	chr19:4036780-4037067(+)$1	287	282	286	11.9999
bb[c	chr17:70549577-70549829(-)$1	252	7	11	11.9999
cc::	chr7:2688535-2688799(+)$1	264	98	102	11.9999
{DDD	chr16:50630960-50631239(+)$1	279	9	13	11.9999
dnnn	chr16:9185498-9185744(+)$1	246	80	84	11.9999
EEE{	chr1:227167664-227167925(+)$1	261	35	39	11.9999
EEE{	chr17:75464936-75465194(+)$1	258	2	6	11.9999
:CCC	chr16:8958685-8958931(-)$1	246	108	112	11.9999
a[ff	chr19:1645917-1646194(-)$1	277	32	36	11.9999
ccc:	chr2:11725348-11725579(+)$1	231	33	37	11.9999
::::	chr7:47406698-47406955(-)$1	257	6	10	11.9999
gg!!	chr16:30093852-30094117(+)$1	265	38	42	11.9999
mmcc	chr9:136796438-136796718(-)$1	280	27	31	11.9999
mmff	chr3:126255400-126255670(+)$1	270	108	112	11.9999
]a]c	chr21:44887409-44887686(-)$1	277	221	225	11.9999
eeee	chr11:2152342-2152549(-)$1	207	110	114	11.9999
hhhh	chr11:65190361-65190573(+)$1	212	72	76	11.9999
gggg	chr17:79670534-79670865(+)$1	331	77	81	11.9999
ddmm	chr7:73020934-73021198(-)$1	264	16	20	11.9999
iii"	chr3:9861807-9862063(+)$1	256	51	55	11.9999
eeee	chr11:2152422-2152626(-)$1	204	187	191	11.9999
FFF{	chr2:230672153-230672502(-)$1	349	134	138	11.9999
ee]d	chr9:136800455-136800695(-)$1	240	43	47	11.9999
ffff	chr3:49823532-49823834(-)$1	302	13	17	11.9999
ggnn	chr3:194829973-194830270(-)$1	297	216	220	11.9999
==::	chr21:46858427-46858681(+)$1	254	84	88	11.9999
====	chr1:23750217-23750512(-)$1	295	91	95	11.9999
ccc!	chr9:136652756-136653038(-)$1	282	161	165	11.9999
ggg[	chr17:70557394-70557674(-)$1	280	20	24	11.9999
C{BB	chr17:75303490-75303771(+)$1	281	30	34	11.9999
6666	chr19:54970868-54971104(+)$1	236	56	60	11.9999
HHHH	chr17:74717887-74718155(-)$1	268	244	248	11.9999
hhhh	chr16:31196434-31196668(+)$1	234	85	89	11.9999
HHHH	chr9:136773294-136773567(-)$1	273	5	9	11.9999
CCC:	chr8:57829613-57829849(+)$1	236	162	166	11.9999
fff:	chr19:7663267-7663516(+)$1	249	36	40	11.9999
FFFF	chr6:43745802-43746073(+)$1	271	15	19	11.9999
::::	chr12:123997906-123998195(-)$1	289	90	94	11.9999
ccc2	chr11:2153347-2153572(-)$1	225	88	92	11.9999
ffff	chr20:32877954-32878216(-)$1	262	116	120	11.9999
HHHL	chr1:249151582-249151903(-)$1	321	33	37	11.9999

#DB
(((.	chr7:1924030-1924281(-)$1	1	101	105	11.9999
....	chr20:57467366-57467606(+)$1	1	30	34	11.9999
(((.	chr9:137251748-137252013(+)$1	1	11	15	11.9999
))))	chr11:2152432-2152638(-)$1	1	199	203	11.9999
((..	chr16:88584206-88584454(+)$1	1	170	174	11.9999
(.(.	chr9:136718561-136718834(-)$1	1	8	12	11.9999
....	chr16:50632829-50633070(+)$1	1	75	79	11.9999
((((	chr14:31066655-31066944(+)$1	1	56	60	11.9999
((((	chr22:35738478-35738726(+)$1	1	2	6	11.9999
))))	chr7:158124814-158125100(-)$1	1	274	278	11.9999
((..	chr7:23454395-23454657(-)$1	1	5	9	11.9999
(((.	chr19:49607531-49607784(+)$1	1	50	54	11.9999
((((	chrX:153991183-153991478(+)$1	1	118	122	11.9999
(((.	chr11:2152111-2152316(-)$1	1	168	172	11.9999
.(.(	chr17:62501970-62502230(-)$1	1	27	31	11.9999
....	chr1:1280121-1280414(-)$1	1	111	115	11.9999
((..	chr19:2270125-2270381(+)$1	1	28	32	11.9999
))))	chr5:147778546-147778806(+)$1	1	131	135	11.9999
....	chr16:88541643-88541900(+)$1	1	53	57	11.9999
((.(	chr5:176516694-176516909(+)$1	1	16	20	11.9999
((((	chr1:11082619-11082860(+)$1	1	1	5	11.9999
((((	chr3:197677126-197677393(+)$1	1	95	99	11.9999
).).	chr21:46862968-46863230(+)$1	1	168	172	11.9999
((((	chr11:65190373-65190600(+)$1	1	60	64	11.9999
((..	chr9:136799932-136800231(-)$1	1	111	115	11.9999
(.(.	chr21:46864205-46864487(+)$1	1	77	81	11.9999
))))	chr11:2153380-2153601(-)$1	1	20	24	11.9999
((..	chr20:60897492-60897732(-)$1	1	60	64	11.9999
....	chr2:201172230-201172483(+)$1	1	35	39	11.9999
))((	chr1:21102933-21103206(-)$1	1	59	63	11.9999
....	chr11:70481997-70482252(-)$1	1	36	40	11.9999
))))	chr13:113767594-113767869(+)$1	1	248	252	11.9999
.)).	chr6:2377905-2378155(+)$1	1	137	141	11.9999
((((	chr11:705663-705929(-)$1	1	23	27	11.9999
))))	chr20:31061941-31062244(-)$1	1	54	58	11.9999
.)))	chr7:933378-933633(+)$1	1	54	58	11.9999
..))	chr2:241468160-241468407(-)$1	1	112	116	11.9999
))))	chr14:58764503-58764771(-)$1	1	134	138	11.9999
(((.	chr11:126146117-126146386(+)$1	1	115	119	11.9999
....	chr21:44081852-44082117(+)$1	1	144	148	11.9999
....	chr3:49052723-49052983(+)$1	1	57	61	11.9999
(((.	chr11:62293237-62293473(-)$1	1	167	171	11.9999
((((	chr9:19380013-19380256(-)$1	1	103	107	11.9999
((((	chr5:74633090-74633365(+)$1	1	75	79	11.9999
....	chr6:136597300-136597534(-)$1	1	67	71	11.9999
(...	chr2:235878709-235878939(+)$1	1	157	161	11.9999
....	chr7:158379684-158379936(-)$1	1	27	31	11.9999
))))	chr22:47537485-47537877(+)$1	1	289	293	11.9999
((((	chr17:94502-94754(-)$1	1	151	155	11.9999
))).	chr19:4036780-4037067(+)$1	1	282	286	11.9999
((.(	chr17:70549577-70549829(-)$1	1	7	11	11.9999
))..	chr7:2688535-2688799(+)$1	1	98	102	11.9999
.(((	chr16:50630960-50631239(+)$1	1	9	13	11.9999
(...	chr16:9185498-9185744(+)$1	1	80	84	11.9999
(((.	chr1:227167664-227167925(+)$1	1	35	39	11.9999
(((.	chr17:75464936-75465194(+)$1	1	2	6	11.9999
.(((	chr16:8958685-8958931(-)$1	1	108	112	11.9999
(.((	chr19:1645917-1646194(-)$1	1	32	36	11.9999
))).	chr2:11725348-11725579(+)$1	1	33	37	11.9999
....	chr7:47406698-47406955(-)$1	1	6	10	11.9999
((..	chr16:30093852-30094117(+)$1	1	38	42	11.9999
..))	chr9:136796438-136796718(-)$1	1	27	31	11.9999
..))	chr3:126255400-126255670(+)$1	1	108	112	11.9999
.).)	chr21:44887409-44887686(-)$1	1	221	225	11.9999
))))	chr11:2152342-2152549(-)$1	1	110	114	11.9999
((((	chr11:65190361-65190573(+)$1	1	72	76	11.9999
))))	chr17:79670534-79670865(+)$1	1	77	81	11.9999
((..	chr7:73020934-73021198(-)$1	1	16	20	11.9999
(((.	chr3:9861807-9862063(+)$1	1	51	55	11.9999
))))	chr11:2152422-2152626(-)$1	1	187	191	11.9999
(((.	chr2:230672153-230672502(-)$1	1	134	138	11.9999
)).)	chr9:136800455-136800695(-)$1	1	43	47	11.9999
))))	chr3:49823532-49823834(-)$1	1	13	17	11.9999
((..	chr3:194829973-194830270(-)$1	1	216	220	11.9999
))..	chr21:46858427-46858681(+)$1	1	84	88	11.9999
))))	chr1:23750217-23750512(-)$1	1	91	95	11.9999
(((.	chr9:136652756-136653038(-)$1	1	161	165	11.9999
(((.	chr17:70557394-70557674(-)$1	1	20	24	11.9999
(.((	chr17:75303490-75303771(+)$1	1	30	34	11.9999
....	chr19:54970868-54971104(+)$1	1	56	60	11.9999
))))	chr17:74717887-74718155(-)$1	1	244	248	11.9999
((((	chr16:31196434-31196668(+)$1	1	85	89	11.9999
((((	chr9:136773294-136773567(-)$1	1	5	9	11.9999
(((.	chr8:57829613-57829849(+)$1	1	162	166	11.9999
))).	chr19:7663267-7663516(+)$1	1	36	40	11.9999
((((	chr6:43745802-43746073(+)$1	1	15	19	11.9999
....	chr12:123997906-123998195(-)$1	1	90	94	11.9999
))).	chr11:2153347-2153572(-)$1	1	88	92	11.9999
))))	chr20:32877954-32878216(-)$1	1	116	120	11.9999
(((.	chr1:249151582-249151903(-)$1	1	33	37	11.9999

#PSSM
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
A : 0.86	a : 0.13	

#score	1079.9999999999998
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_transcript_m1_run2.nuc.txt

#NT
GAGUGGCA	chr3:136045900-136046160(+)$1	260	36	44	10.5384
UUCUGGCU	chr1:201104726-201104997(-)$1	271	7	15	9.2884
UGGUGGCU	chr12:6647197-6647463(+)$1	266	20	28	13.8076
GAGAGGCU	chr7:99691694-99691949(-)$1	255	74	82	11.5961
CAGGGGCU	chr1:160295276-160295526(-)$1	250	211	219	11.9807
caguggcu	chr5:43294078-43294317(-)$1	239	210	218	15.2500
GAGUGGGU	chr6:37138811-37139084(+)$1	273	27	35	10.4423
UCGUGGCU	chr4:39699665-39699932(+)$1	267	6	14	13.1346
UAGUGGCU	chr16:84812590-84812841(+)$1	251	173	181	15.8269
AAGGGGCU	chr1:33282734-33283036(-)$1	302	142	150	11.2115
UGGGGGCU	chr19:41265288-41265529(+)$1	241	201	209	10.5384
AAGUUGCU	chr11:18422292-18422590(+)$1	298	240	248	10.4423
AAGUCGCU	chr7:56173956-56174177(-)$1	221	10	18	10.1538
UGGUUGCU	chr2:176042943-176043202(-)$1	259	155	163	9.7692
gaggggcu	chr19:51856368-51856626(-)$1	258	10	18	11.7884
GAGUGGCU	chr10:43882060-43882301(-)$1	241	159	167	15.0576
CAGUGGCA	chr11:65822534-65822837(+)$1	303	166	174	10.7307
UUAUGGCU	chr17:57756715-57756975(+)$1	260	184	192	9.1923
UGCUGGCU	chr3:98312194-98312449(-)$1	255	137	145	9.4807
CAGUGGCU	chr2:10924260-10924535(-)$1	275	59	67	15.2500
UGGCGGCU	chr9:127177575-127177813(-)$1	238	110	118	10.1538
UGGAGGCU	chr1:120263758-120264028(+)$1	270	194	202	10.3461
CAGUGUCU	chr6:28871971-28872227(-)$1	256	61	69	10.7307
AUGUGGCU	chr17:61655780-61656026(+)$1	246	23	31	12.2692
CAGUGCCU	chr11:71146266-71146565(-)$1	299	110	118	10.6346
CCGUGGCU	chr11:64084819-64085080(-)$1	261	135	143	12.5576
CAGGGGCU	chr12:57624599-57624872(+)$1	273	72	80	11.9807
UCGUGGCU	chr19:18496951-18497241(+)$1	290	111	119	13.1346
CAGUGGCU	chr10:74033968-74034239(+)$1	271	188	196	15.2500
CAGUUGCU	chr12:57894076-57894313(+)$1	237	49	57	11.2115
GAGUGGCU	chr1:160263083-160263352(-)$1	269	209	217	15.0576
CAGUGGCU	chr2:10924335-10924553(-)$1	218	77	85	15.2500
UAGGGGCU	chr1:879971-880246(-)$1	275	195	203	12.5576
GGGUGGCU	chr1:145440534-145440764(+)$1	230	4	12	13.0384
GAGUGGCC	chr1:43826463-43826686(+)$1	223	6	14	10.4423
UUGUGGCU	chr17:26903718-26903962(-)$1	244	111	119	13.6153
UAGUUGCU	chr1:17766017-17766251(-)$1	234	161	169	11.7884
UGGAGGCU	chr16:88713407-88713669(-)$1	262	248	256	10.3461
UAGUGGUU	chr2:62103206-62103453(-)$1	247	97	105	11.3076
UAUUGGCU	chrX:47444235-47444472(+)$1	237	50	58	11.5000
GAGUGGCU	chr22:22221655-22221915(-)$1	260	9	17	15.0576
CGGUGGCU	chr22:24236872-24237100(+)$1	228	8	16	13.2307
CAGUGGUU	chr11:134118188-134118464(-)$1	276	245	253	10.7307
UUGUGGCU	chr17:7476053-7476283(+)$1	230	152	160	13.6153
GAGUAGCU	chr7:42964173-42964494(-)$1	321	184	192	10.7307
GAGCGGCU	chr9:86594976-86595215(-)$1	239	167	175	11.4038
UUUUGGCU	chrX:77378661-77378907(+)$1	246	11	19	9.2884
AAGAGGCU	chr16:56642405-56642650(+)$1	245	192	200	11.0192
GAGUGGCU	chr1:145438772-145439028(+)$1	256	178	186	15.0576
CUGUGGCU	chr9:128003239-128003488(-)$1	249	42	50	13.0384
UGGUGUCU	chr5:233614-233860(+)$1	246	106	114	9.2884

#otherMatches

#Struct PSSM
NNNNA{GG	chr12:57036435-57036677(-)$1	242	8	16	12.2692
eee]ccc:	chr3:136045900-136046160(+)$1	260	36	44	10.5384
{GGGGGGG	chr1:201104726-201104997(-)$1	271	7	15	9.2884
ddbbnnnn	chr12:6647197-6647463(+)$1	266	20	28	13.8076
A{EEEEE:	chr7:99691694-99691949(-)$1	255	74	82	11.5961
HHHHHH__	chr1:160295276-160295526(-)$1	250	211	219	11.9807
FFFFFccc	chr5:43294078-43294317(-)$1	239	210	218	15.2500
FFFeeeee	chr6:37138811-37139084(+)$1	273	27	35	10.4423
flllffff	chr4:39699665-39699932(+)$1	267	6	14	13.1346
!bbnnnnn	chr16:84812590-84812841(+)$1	251	173	181	15.8269
oooccca]	chr1:33282734-33283036(-)$1	302	142	150	11.2115
E}DDDD}A	chr19:41265288-41265529(+)$1	241	201	209	10.5384
}FFFFFFD	chr11:18422292-18422590(+)$1	298	240	248	10.4423
MMBB{DDD	chr7:56173956-56174177(-)$1	221	10	18	10.1538
eeee[bbu	chr2:176042943-176043202(-)$1	259	155	163	9.7692
iiiiiiii	chr19:51856368-51856626(-)$1	258	10	18	11.7884
nnnfffff	chr10:43882060-43882301(-)$1	241	159	167	15.0576
EEE}CCC}	chr11:65822534-65822837(+)$1	303	166	174	10.7307
======&&	chr17:57756715-57756975(+)$1	260	184	192	9.1923
ffffff!!	chr3:98312194-98312449(-)$1	255	137	145	9.4807
BB{HHHHH	chr2:10924260-10924535(-)$1	275	59	67	15.2500
eeeee[ee	chr9:127177575-127177813(-)$1	238	110	118	10.1538
YYFFFFFF	chr1:120263758-120264028(+)$1	270	194	202	10.3461
GGGGGGGL	chr6:28871971-28872227(-)$1	256	61	69	10.7307
qddddEEE	chr17:61655780-61656026(+)$1	246	23	31	12.2692
dddd]bb5	chr11:71146266-71146565(-)$1	299	110	118	10.6346
mmmmeeee	chr11:64084819-64085080(-)$1	261	135	143	12.5576
55a22ddd	chr12:57624599-57624872(+)$1	273	72	80	11.9807
:ggggggg	chr19:18496951-18497241(+)$1	290	111	119	13.1346
::DDDD}C	chr10:74033968-74034239(+)$1	271	188	196	15.2500
iiiiiiii	chr12:57894076-57894313(+)$1	237	49	57	11.2115
========	chr1:160263083-160263352(-)$1	269	209	217	15.0576
BB{HHHHH	chr2:10924335-10924553(-)$1	218	77	85	15.2500
$$$$$iii	chr1:879971-880246(-)$1	275	195	203	12.5576
BB{EEEEE	chr1:145440534-145440764(+)$1	230	4	12	13.0384
"""ddddm	chr1:43826463-43826686(+)$1	223	6	14	10.4423
clllccc]	chr17:26903718-26903962(-)$1	244	111	119	13.6153
ssdddd55	chr1:17766017-17766251(-)$1	234	161	169	11.7884
wwwggggg	chr16:88713407-88713669(-)$1	262	248	256	10.3461
eeeeqqqq	chr2:62103206-62103453(-)$1	247	97	105	11.3076
eeeeCCCM	chrX:47444235-47444472(+)$1	237	50	58	11.5000
C{BB{GGG	chr22:22221655-22221915(-)$1	260	9	17	15.0576
A{CCCBBh	chr22:24236872-24237100(+)$1	228	8	16	13.2307
ee22a]gg	chr11:134118188-134118464(-)$1	276	245	253	10.7307
ffffff]e	chr17:7476053-7476283(+)$1	230	152	160	13.6153
========	chr7:42964173-42964494(-)$1	321	184	192	10.7307
IIIIIIII	chr9:86594976-86595215(-)$1	239	167	175	11.4038
========	chrX:77378661-77378907(+)$1	246	11	19	9.2884
]bb]ccc2	chr16:56642405-56642650(+)$1	245	192	200	11.0192
gggggppp	chr1:145438772-145439028(+)$1	256	178	186	15.0576
ellleeee	chr9:128003239-128003488(-)$1	249	42	50	13.0384
]hhhhhhh	chr5:233614-233860(+)$1	246	106	114	9.2884

#DB
....(.((	chr12:57036435-57036677(-)$1	1	8	16	12.2692
))).))).	chr3:136045900-136046160(+)$1	1	36	44	10.5384
.(((((((	chr1:201104726-201104997(-)$1	1	7	15	9.2884
((((....	chr12:6647197-6647463(+)$1	1	20	28	13.8076
(.(((((.	chr7:99691694-99691949(-)$1	1	74	82	11.5961
))))))..	chr1:160295276-160295526(-)$1	1	211	219	11.9807
)))))(((	chr5:43294078-43294317(-)$1	1	210	218	15.2500
((((((((	chr6:37138811-37139084(+)$1	1	27	35	10.4423
(...))))	chr4:39699665-39699932(+)$1	1	6	14	13.1346
.((.....	chr16:84812590-84812841(+)$1	1	173	181	15.8269
...)))).	chr1:33282734-33283036(-)$1	1	142	150	11.2115
).)))).)	chr19:41265288-41265529(+)$1	1	201	209	10.5384
.)))))))	chr11:18422292-18422590(+)$1	1	240	248	10.4423
..((.(((	chr7:56173956-56174177(-)$1	1	10	18	10.1538
((((.((.	chr2:176042943-176043202(-)$1	1	155	163	9.7692
((((((((	chr19:51856368-51856626(-)$1	1	10	18	11.7884
...)))))	chr10:43882060-43882301(-)$1	1	159	167	15.0576
))).))).	chr11:65822534-65822837(+)$1	1	166	174	10.7307
((((((..	chr17:57756715-57756975(+)$1	1	184	192	9.1923
((((((..	chr3:98312194-98312449(-)$1	1	137	145	9.4807
((.(((((	chr2:10924260-10924535(-)$1	1	59	67	15.2500
(((((.((	chr9:127177575-127177813(-)$1	1	110	118	10.1538
..))))))	chr1:120263758-120264028(+)$1	1	194	202	10.3461
(((((((.	chr6:28871971-28872227(-)$1	1	61	69	10.7307
.))))(((	chr17:61655780-61656026(+)$1	1	23	31	12.2692
)))).)).	chr11:71146266-71146565(-)$1	1	110	118	10.6346
....))))	chr11:64084819-64085080(-)$1	1	135	143	12.5576
..)..)))	chr12:57624599-57624872(+)$1	1	72	80	11.9807
.(((((((	chr19:18496951-18497241(+)$1	1	111	119	13.1346
..)))).)	chr10:74033968-74034239(+)$1	1	188	196	15.2500
((((((((	chr12:57894076-57894313(+)$1	1	49	57	11.2115
((((((((	chr1:160263083-160263352(-)$1	1	209	217	15.0576
((.(((((	chr2:10924335-10924553(-)$1	1	77	85	15.2500
.....(((	chr1:879971-880246(-)$1	1	195	203	12.5576
((.(((((	chr1:145440534-145440764(+)$1	1	4	12	13.0384
...((((.	chr1:43826463-43826686(+)$1	1	6	14	10.4423
(...))).	chr17:26903718-26903962(-)$1	1	111	119	13.6153
..))))..	chr1:17766017-17766251(-)$1	1	161	169	11.7884
...)))))	chr16:88713407-88713669(-)$1	1	248	256	10.3461
((((....	chr2:62103206-62103453(-)$1	1	97	105	11.3076
))))(((.	chrX:47444235-47444472(+)$1	1	50	58	11.5000
(.((.(((	chr22:22221655-22221915(-)$1	1	9	17	15.0576
(.((((((	chr22:24236872-24237100(+)$1	1	8	16	13.2307
))..).))	chr11:134118188-134118464(-)$1	1	245	253	10.7307
)))))).)	chr17:7476053-7476283(+)$1	1	152	160	13.6153
((((((((	chr7:42964173-42964494(-)$1	1	184	192	10.7307
((((((((	chr9:86594976-86595215(-)$1	1	167	175	11.4038
((((((((	chrX:77378661-77378907(+)$1	1	11	19	9.2884
.)).))).	chr16:56642405-56642650(+)$1	1	192	200	11.0192
(((((...	chr1:145438772-145439028(+)$1	1	178	186	15.0576
(...))))	chr9:128003239-128003488(-)$1	1	42	50	13.0384
.)))))))	chr5:233614-233860(+)$1	1	106	114	9.2884

#PSSM
U : 0.38	C : 0.24	G : 0.21	A : 0.11	c : 0.01	g : 0.01	
A : 0.55	G : 0.19	U : 0.15	C : 0.05	a : 0.03	
G : 0.86	C : 0.03	g : 0.03	U : 0.03	A : 0.01	
U : 0.75	G : 0.09	A : 0.07	C : 0.03	u : 0.01	g : 0.01	
G : 0.84	U : 0.07	g : 0.03	C : 0.01	A : 0.01	
G : 0.90	g : 0.03	U : 0.03	C : 0.01	
C : 0.90	c : 0.03	U : 0.03	G : 0.01	
U : 0.90	A : 0.03	u : 0.03	C : 0.01	

#score	623.3846153846159
#seq	52
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_transcript_m2_run2.nuc.txt

#NT
UUGUGUU	chr2:160569444-160569703(+)$1	259	250	257	12.9333
uuguguu	chr4:68330788-68331069(-)$1	281	26	33	12.9333
cuguguu	chr9:138841828-138842046(-)$1	218	68	75	16.8666
CUGUGGU	chr1:31461439-31461749(-)$1	310	144	151	12.9999
cgguguu	chr1:42706890-42707138(-)$1	248	102	109	12.3999
CUGUUUU	chr6:80387129-80387434(+)$1	305	229	236	12.7999
CUGCGUU	chr11:129764932-129765242(-)$1	310	169	176	12.3999
CUGUGUU	chr2:231211816-231212073(+)$1	257	212	219	16.8666
CUGUGUU	chr3:99567710-99567959(+)$1	249	66	73	16.8666
CUGGGUU	chr19:34883335-34883597(+)$1	262	38	45	12.5333
CUUUGUU	chr22:38787030-38787349(-)$1	319	71	78	12.5999
CUGUUUU	chr12:72233997-72234273(+)$1	276	98	105	12.7999
GUGUGUU	chr1:1812482-1812720(-)$1	238	144	151	12.9999
auguguu	chr16:10503933-10504188(+)$1	255	134	141	12.8666
cugugau	chr21:46288579-46288858(-)$1	279	196	203	13.1333
GUGUGUU	chr17:76117660-76117957(-)$1	297	79	86	12.9999
CUGGGUU	chr1:151227200-151227524(+)$1	324	117	124	12.5333
caguguu	chr21:44264834-44265102(-)$1	268	10	17	12.5999
cuguguu	chr2:97552873-97553104(-)$1	231	167	174	16.8666
cuguggu	chr5:93995657-93996054(+)$1	397	346	353	12.9999
cuauguu	chr2:38555250-38555543(-)$1	293	102	109	12.4666
CAGUGUU	chr1:27028483-27028730(+)$1	247	31	38	12.5999
ccguguu	chr2:111404648-111404909(-)$1	261	51	58	12.4666
cugaguu	chr11:68266716-68266976(+)$1	260	162	169	12.5333
cuguuuu	chr16:23873401-23873680(+)$1	279	168	175	12.7999
CUGUGUC	chr19:18632114-18632407(-)$1	293	122	129	12.5999
CUGUUUU	chr22:23579733-23580031(+)$1	298	22	29	12.7999
cugaguu	chr16:10543918-10544173(+)$1	255	86	93	12.5333
cuguguu	chr7:64260543-64260813(+)$1	270	60	67	16.8666
CUGUGUG	chr2:131877172-131877461(+)$1	289	248	255	12.6666
cugugcu	chr1:207519766-207520023(+)$1	257	62	69	12.9333
cuguuuu	chrX:41032095-41032381(+)$1	286	123	130	12.7999
CUGUCUU	chr19:28918840-28919119(-)$1	279	35	42	12.5333
cuuuguu	chr1:91454023-91454238(-)$1	215	77	84	12.5999
CUGUGUG	chr21:46285786-46286094(-)$1	308	135	142	12.6666
UUGUGUU	chr19:46220152-46220430(-)$1	278	131	138	12.9333
CUGUGAU	chr20:50034353-50034612(-)$1	259	151	158	13.1333
UUGUGUU	chr16:89369241-89369549(-)$1	308	124	131	12.9333
cugugau	chr8:17855146-17855388(+)$1	242	128	135	13.1333
CUGUGUU	chr7:2417889-2418131(+)$1	242	9	16	16.8666
guguguu	chr8:100091310-100091553(+)$1	243	95	102	12.9999
cugugau	chr3:56646680-56646925(+)$1	245	63	70	13.1333
CUGUGCU	chr19:806097-806372(+)$1	275	23	30	12.9333
cuguguu	chr1:246258895-246259200(-)$1	305	201	208	16.8666
CUGUGUU	chr20:3902901-3903157(+)$1	256	83	90	16.8666
cuauguu	chr1:247327093-247327356(-)$1	263	179	186	12.4666
CCGUGUU	chr5:61602391-61602676(+)$1	285	9	16	12.4666
CUGUGUU	chr7:110925552-110925851(-)$1	299	79	86	16.8666
AUGUGUU	chr9:86593718-86593947(-)$1	229	117	124	12.8666
CUGGGUU	chr22:20112007-20112260(+)$1	253	53	60	12.5333
cuguguu	chr2:38531008-38531257(-)$1	249	32	39	16.8666
cugugau	chr1:193210895-193211155(+)$1	260	226	233	13.1333
cugugug	chr19:5605665-5605971(-)$1	306	32	39	12.6666
cugucuu	chr4:140065906-140066171(-)$1	265	86	93	12.5333
guguguu	chr4:79731103-79731369(+)$1	266	234	241	12.9999
CUGAGUU	chr16:89433610-89433868(-)$1	258	35	42	12.5333
CAGUGUU	chr10:126771904-126772172(-)$1	268	166	173	12.5999
cuguggu	chr22:19323992-19324315(-)$1	323	130	137	12.9999
cuguggu	chr22:20091335-20091622(+)$1	287	128	135	12.9999
guguguu	chr16:23862557-23862854(+)$1	297	117	124	12.9999
cucuguu	chr7:76191866-76192129(+)$1	263	9	16	12.3999
CUGUGUU	chr1:47697283-47697557(-)$1	274	256	263	16.8666
CUGUGCU	chr20:49185279-49185547(+)$1	268	3	10	12.9333
cuguguc	chr1:225598133-225598352(-)$1	219	49	56	12.5999
auguguu	chr7:151743184-151743400(+)$1	216	147	154	12.8666
CUGUGUG	chr10:135272184-135272423(+)$1	239	178	185	12.6666
cuuuguu	chr1:111697032-111697315(+)$1	283	66	73	12.5999
CUGUGUA	chr16:89553424-89553722(-)$1	298	16	23	12.4666
CUGUGAU	chr16:89435400-89435674(-)$1	274	113	120	13.1333
cuguguu	chr1:93122484-93122731(-)$1	247	61	68	16.8666
CUGUGUU	chr21:46283135-46283390(-)$1	255	198	205	16.8666
CUGUUUU	chr16:89555793-89556059(-)$1	266	82	89	12.7999
cuguguc	chr8:117745084-117745386(-)$1	302	166	173	12.5999
CUUUGUU	chr6:7125987-7126235(+)$1	248	11	18	12.5999

#otherMatches

#Struct PSSM
JJ}BBYY	chr11:3009209-3009470(-)$1	261	209	216	12.5999
eee]ddd	chr2:160569444-160569703(+)$1	259	250	257	12.9333
hhhhhhh	chr4:68330788-68331069(-)$1	281	26	33	12.9333
JJJJJJJ	chr9:138841828-138842046(-)$1	218	68	75	16.8666
boooooo	chr1:31461439-31461749(-)$1	310	144	151	12.9999
4======	chr1:42706890-42707138(-)$1	248	102	109	12.3999
ddd::::	chr6:80387129-80387434(+)$1	305	229	236	12.7999
bb[gggg	chr11:129764932-129765242(-)$1	310	169	176	12.3999
g333hhh	chr2:231211816-231212073(+)$1	257	212	219	16.8666
hhhhhhn	chr3:99567710-99567959(+)$1	249	66	73	16.8666
dd[a[cc	chr19:34883335-34883597(+)$1	262	38	45	12.5333
JJJdddd	chr22:38787030-38787349(-)$1	319	71	78	12.5999
ffffffg	chr12:72233997-72234273(+)$1	276	98	105	12.7999
::dddd[	chr1:1812482-1812720(-)$1	238	144	151	12.9999
EEEEIII	chr16:10503933-10504188(+)$1	255	134	141	12.8666
c:ggggg	chr21:46288579-46288858(-)$1	279	196	203	13.1333
CC{DDDD	chr17:76117660-76117957(-)$1	297	79	86	12.9999
C{GGGGG	chr1:151227200-151227524(+)$1	324	117	124	12.5333
CCC{ALL	chr21:44264834-44265102(-)$1	268	10	17	12.5999
=======	chr2:97552873-97553104(-)$1	231	167	174	16.8666
EEEEddd	chr5:93995657-93996054(+)$1	397	346	353	12.9999
e333ddd	chr2:38555250-38555543(-)$1	293	102	109	12.4666
eee:FFF	chr1:27028483-27028730(+)$1	247	31	38	12.5999
JJJJ:::	chr2:111404648-111404909(-)$1	261	51	58	12.4666
:ffffff	chr11:68266716-68266976(+)$1	260	162	169	12.5333
ffffff:	chr16:23873401-23873680(+)$1	279	168	175	12.7999
ddddddd	chr19:18632114-18632407(-)$1	293	122	129	12.5999
eeee[ff	chr22:23579733-23580031(+)$1	298	22	29	12.7999
cc]a]bb	chr16:10543918-10544173(+)$1	255	86	93	12.5333
88eeeee	chr7:64260543-64260813(+)$1	270	60	67	16.8666
33ccc]e	chr2:131877172-131877461(+)$1	289	248	255	12.6666
c!!cccd	chr1:207519766-207520023(+)$1	257	62	69	12.9333
pdddd44	chrX:41032095-41032381(+)$1	286	123	130	12.7999
yyyyyyy	chr19:28918840-28919119(-)$1	279	35	42	12.5333
AKKCCC{	chr1:91454023-91454238(-)$1	215	77	84	12.5999
eee[fff	chr21:46285786-46286094(-)$1	308	135	142	12.6666
bccc[ii	chr19:46220152-46220430(-)$1	278	131	138	12.9333
eee[bb[	chr20:50034353-50034612(-)$1	259	151	158	13.1333
NDDDDKK	chr16:89369241-89369549(-)$1	308	124	131	12.9333
mmdddd]	chr8:17855146-17855388(+)$1	242	128	135	13.1333
b[bb[dd	chr7:2417889-2418131(+)$1	242	9	16	16.8666
[ccc"""	chr8:100091310-100091553(+)$1	243	95	102	12.9999
bb333cc	chr3:56646680-56646925(+)$1	245	63	70	13.1333
BHHHHHH	chr19:806097-806372(+)$1	275	23	30	12.9333
:::::::	chr1:246258895-246259200(-)$1	305	201	208	16.8666
ggggg33	chr20:3902901-3903157(+)$1	256	83	90	16.8666
FFFF}FF	chr1:247327093-247327356(-)$1	263	179	186	12.4666
ffffffq	chr5:61602391-61602676(+)$1	285	9	16	12.4666
ccooooo	chr7:110925552-110925851(-)$1	299	79	86	16.8666
dd4444b	chr9:86593718-86593947(-)$1	229	117	124	12.8666
:::ffff	chr22:20112007-20112260(+)$1	253	53	60	12.5333
ddddnnn	chr2:38531008-38531257(-)$1	249	32	39	16.8666
hhhhhhh	chr1:193210895-193211155(+)$1	260	226	233	13.1333
QQQQQQC	chr19:5605665-5605971(-)$1	306	32	39	12.6666
ddd>>>>	chr4:140065906-140066171(-)$1	265	86	93	12.5333
FFhhhhh	chr4:79731103-79731369(+)$1	266	234	241	12.9999
::ccc!!	chr16:89433610-89433868(-)$1	258	35	42	12.5333
ppppggg	chr10:126771904-126772172(-)$1	268	166	173	12.5999
ooooddd	chr22:19323992-19324315(-)$1	323	130	137	12.9999
"eeeeen	chr22:20091335-20091622(+)$1	287	128	135	12.9999
ccdddd2	chr16:23862557-23862854(+)$1	297	117	124	12.9999
FPPPPPP	chr7:76191866-76192129(+)$1	263	9	16	12.3999
IIIIIZZ	chr1:47697283-47697557(-)$1	274	256	263	16.8666
eeeee!!	chr20:49185279-49185547(+)$1	268	3	10	12.9333
eeeeedd	chr1:225598133-225598352(-)$1	219	49	56	12.5999
:IIIIII	chr7:151743184-151743400(+)$1	216	147	154	12.8666
ffffff[	chr10:135272184-135272423(+)$1	239	178	185	12.6666
ssssssc	chr1:111697032-111697315(+)$1	283	66	73	12.5999
FFFFFWW	chr16:89553424-89553722(-)$1	298	16	23	12.4666
EEEE::f	chr16:89435400-89435674(-)$1	274	113	120	13.1333
ccbbbb]	chr1:93122484-93122731(-)$1	247	61	68	16.8666
nnnna22	chr21:46283135-46283390(-)$1	255	198	205	16.8666
cffffff	chr16:89555793-89556059(-)$1	266	82	89	12.7999
gggg22d	chr8:117745084-117745386(-)$1	302	166	173	12.5999
:::::::	chr6:7125987-7126235(+)$1	248	11	18	12.5999

#DB
)).))..	chr11:3009209-3009470(-)$1	1	209	216	12.5999
))).)))	chr2:160569444-160569703(+)$1	1	250	257	12.9333
(((((((	chr4:68330788-68331069(-)$1	1	26	33	12.9333
(((((((	chr9:138841828-138842046(-)$1	1	68	75	16.8666
(......	chr1:31461439-31461749(-)$1	1	144	151	12.9999
.))))))	chr1:42706890-42707138(-)$1	1	102	109	12.3999
)))....	chr6:80387129-80387434(+)$1	1	229	236	12.7999
((.((((	chr11:129764932-129765242(-)$1	1	169	176	12.3999
)...)))	chr2:231211816-231212073(+)$1	1	212	219	16.8666
((((((.	chr3:99567710-99567959(+)$1	1	66	73	16.8666
((.(.((	chr19:34883335-34883597(+)$1	1	38	45	12.5333
(((((((	chr22:38787030-38787349(-)$1	1	71	78	12.5999
(((((((	chr12:72233997-72234273(+)$1	1	98	105	12.7999
..((((.	chr1:1812482-1812720(-)$1	1	144	151	12.9999
)))))))	chr16:10503933-10504188(+)$1	1	134	141	12.8666
).(((((	chr21:46288579-46288858(-)$1	1	196	203	13.1333
((.((((	chr17:76117660-76117957(-)$1	1	79	86	12.9999
(.(((((	chr1:151227200-151227524(+)$1	1	117	124	12.5333
(((.(..	chr21:44264834-44265102(-)$1	1	10	17	12.5999
)))))))	chr2:97552873-97553104(-)$1	1	167	174	16.8666
))))(((	chr5:93995657-93996054(+)$1	1	346	353	12.9999
)...)))	chr2:38555250-38555543(-)$1	1	102	109	12.4666
))).(((	chr1:27028483-27028730(+)$1	1	31	38	12.5999
((((...	chr2:111404648-111404909(-)$1	1	51	58	12.4666
.((((((	chr11:68266716-68266976(+)$1	1	162	169	12.5333
)))))).	chr16:23873401-23873680(+)$1	1	168	175	12.7999
(((((((	chr19:18632114-18632407(-)$1	1	122	129	12.5999
((((.((	chr22:23579733-23580031(+)$1	1	22	29	12.7999
)).).))	chr16:10543918-10544173(+)$1	1	86	93	12.5333
..)))))	chr7:64260543-64260813(+)$1	1	60	67	16.8666
..))).)	chr2:131877172-131877461(+)$1	1	248	255	12.6666
(..((((	chr1:207519766-207520023(+)$1	1	62	69	12.9333
.))))..	chrX:41032095-41032381(+)$1	1	123	130	12.7999
.......	chr19:28918840-28919119(-)$1	1	35	42	12.5333
(..(((.	chr1:91454023-91454238(-)$1	1	77	84	12.5999
(((.(((	chr21:46285786-46286094(-)$1	1	135	142	12.6666
)(((.((	chr19:46220152-46220430(-)$1	1	131	138	12.9333
(((.((.	chr20:50034353-50034612(-)$1	1	151	158	13.1333
.((((..	chr16:89369241-89369549(-)$1	1	124	131	12.9333
..)))).	chr8:17855146-17855388(+)$1	1	128	135	13.1333
(.((.((	chr7:2417889-2418131(+)$1	1	9	16	16.8666
.(((...	chr8:100091310-100091553(+)$1	1	95	102	12.9999
))...))	chr3:56646680-56646925(+)$1	1	63	70	13.1333
(((((((	chr19:806097-806372(+)$1	1	23	30	12.9333
.......	chr1:246258895-246259200(-)$1	1	201	208	16.8666
)))))..	chr20:3902901-3903157(+)$1	1	83	90	16.8666
)))).))	chr1:247327093-247327356(-)$1	1	179	186	12.4666
((((((.	chr5:61602391-61602676(+)$1	1	9	16	12.4666
((.....	chr7:110925552-110925851(-)$1	1	79	86	16.8666
))....)	chr9:86593718-86593947(-)$1	1	117	124	12.8666
...((((	chr22:20112007-20112260(+)$1	1	53	60	12.5333
((((...	chr2:38531008-38531257(-)$1	1	32	39	16.8666
)))))))	chr1:193210895-193211155(+)$1	1	226	233	13.1333
......(	chr19:5605665-5605971(-)$1	1	32	39	12.6666
)))....	chr4:140065906-140066171(-)$1	1	86	93	12.5333
))(((((	chr4:79731103-79731369(+)$1	1	234	241	12.9999
..(((..	chr16:89433610-89433868(-)$1	1	35	42	12.5333
....)))	chr10:126771904-126772172(-)$1	1	166	173	12.5999
....)))	chr22:19323992-19324315(-)$1	1	130	137	12.9999
.(((((.	chr22:20091335-20091622(+)$1	1	128	135	12.9999
)))))).	chr16:23862557-23862854(+)$1	1	117	124	12.9999
(......	chr7:76191866-76192129(+)$1	1	9	16	12.3999
)))))..	chr1:47697283-47697557(-)$1	1	256	263	16.8666
(((((..	chr20:49185279-49185547(+)$1	1	3	10	12.9333
)))))))	chr1:225598133-225598352(-)$1	1	49	56	12.5999
.))))))	chr7:151743184-151743400(+)$1	1	147	154	12.8666
((((((.	chr10:135272184-135272423(+)$1	1	178	185	12.6666
......)	chr1:111697032-111697315(+)$1	1	66	73	12.5999
(((((..	chr16:89553424-89553722(-)$1	1	16	23	12.4666
((((..(	chr16:89435400-89435674(-)$1	1	113	120	13.1333
)))))).	chr1:93122484-93122731(-)$1	1	61	68	16.8666
....)..	chr21:46283135-46283390(-)$1	1	198	205	16.8666
(((((((	chr16:89555793-89556059(-)$1	1	82	89	12.7999
))))..)	chr8:117745084-117745386(-)$1	1	166	173	12.5999
.......	chr6:7125987-7126235(+)$1	1	11	18	12.5999

#PSSM
C : 0.43	c : 0.39	U : 0.04	g : 0.04	G : 0.02	a : 0.02	u : 0.01	A : 0.01	
U : 0.46	u : 0.43	A : 0.04	g : 0.01	a : 0.01	c : 0.01	C : 0.01	
G : 0.49	g : 0.41	U : 0.02	a : 0.02	u : 0.02	c : 0.01	
U : 0.45	u : 0.45	G : 0.04	a : 0.02	C : 0.01	A : 0.01	
G : 0.45	g : 0.43	U : 0.05	u : 0.02	C : 0.01	c : 0.01	
U : 0.45	u : 0.37	a : 0.05	g : 0.04	A : 0.02	C : 0.02	G : 0.01	c : 0.01	
U : 0.45	u : 0.43	G : 0.04	c : 0.02	C : 0.01	g : 0.01	A : 0.01	

#score	1010.066666666666
#seq	75
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_transcript_m2_run1.nuc.txt

#NT
GGG	chr17:79961824-79962039(+)$1	215	12	15	9.0000
GGG	chr9:136833634-136833870(-)$1	236	84	87	9.0000
GGG	chr17:79962162-79962405(+)$1	243	61	64	9.0000
GGG	chr15:74701945-74702207(-)$1	262	15	18	9.0000
GGG	chr17:79135468-79135720(-)$1	252	16	19	9.0000
GGG	chr19:7709175-7709488(+)$1	313	7	10	9.0000
GGG	chr20:62284206-62284477(-)$1	271	2	5	9.0000
GGG	chr18:46067354-46067637(+)$1	283	31	34	9.0000
GGG	chr8:145018864-145019115(-)$1	251	217	220	9.0000
ggg	chr21:46860692-46860945(+)$1	253	65	68	9.0000
GGG	chr7:5434139-5434405(-)$1	266	13	16	9.0000
GGG	chr16:977990-978326(-)$1	336	18	21	9.0000
GGG	chr13:24152890-24153180(+)$1	290	74	77	9.0000
GGG	chr1:154981752-154982031(+)$1	279	4	7	9.0000
GGG	chr9:140311217-140311504(-)$1	287	18	21	9.0000
GGG	chr7:150077100-150077355(+)$1	255	1	4	9.0000
GGG	chr20:60911161-60911418(-)$1	257	12	15	9.0000
GGG	chr13:50699231-50699456(-)$1	225	49	52	9.0000
GGG	chr17:77953422-77953660(-)$1	238	84	87	9.0000
GGG	chr19:1267070-1267379(+)$1	309	64	67	9.0000
GGG	chr19:4060898-4061152(-)$1	254	11	14	9.0000
GGG	chr14:105796741-105797008(+)$1	267	0	3	9.0000
GGG	chr19:1412420-1412657(+)$1	237	48	51	9.0000
GGG	chr9:138981196-138981443(-)$1	247	1	4	9.0000
GGG	chr17:79884914-79885199(-)$1	285	17	20	9.0000
GGG	chr3:183353496-183353817(+)$1	321	44	47	9.0000
ggg	chr16:8961009-8961268(-)$1	259	91	94	9.0000
GGG	chr20:62406577-62406836(-)$1	259	12	15	9.0000
GGG	chr12:133097511-133097737(+)$1	226	6	9	9.0000
GGG	chr1:3464411-3464654(-)$1	243	15	18	9.0000
GGG	chr2:240230495-240230742(-)$1	247	9	12	9.0000
GGG	chr17:17614721-17614981(+)$1	260	26	29	9.0000
GGG	chr17:170805-171058(-)$1	253	78	81	9.0000
GGG	chr19:4061844-4062051(-)$1	207	22	25	9.0000
GGG	chr20:36017313-36017568(+)$1	255	18	21	9.0000
GGG	chr19:13262678-13262932(+)$1	254	65	68	9.0000
GGG	chr14:105157870-105158103(+)$1	233	58	61	9.0000
GGG	chr9:136822510-136822826(-)$1	316	4	7	9.0000
GGG	chr17:80189644-80189899(+)$1	255	69	72	9.0000
GGG	chr17:78247864-78248135(+)$1	271	12	15	9.0000
GGG	chr9:136545564-136545803(-)$1	239	21	24	9.0000
GGG	chr12:133101062-133101280(+)$1	218	9	12	9.0000
GGG	chr9:136553140-136553387(-)$1	247	82	85	9.0000
GGG	chr16:87357404-87357641(-)$1	237	2	5	9.0000
GGG	chr1:2198994-2199252(+)$1	258	3	6	9.0000
GGG	chr20:35992828-35993069(+)$1	241	28	31	9.0000
GGG	chr16:1122881-1123151(-)$1	270	3	6	9.0000
GGG	chr19:1156778-1157046(-)$1	268	22	25	9.0000
GGG	chr20:17661991-17662264(-)$1	273	3	6	9.0000
ggg	chr9:136793976-136794226(-)$1	250	24	27	9.0000
GGG	chr20:62688016-62688318(+)$1	302	12	15	9.0000
GGG	chr1:960009-960238(+)$1	229	27	30	9.0000
GGG	chr16:2280440-2280703(+)$1	263	9	12	9.0000
GGG	chr17:76117909-76118151(-)$1	242	0	3	9.0000
GGG	chr21:46886467-46886762(+)$1	295	8	11	9.0000
GGG	chr11:126233194-126233452(+)$1	258	100	103	9.0000
ggg	chr1:151430903-151431201(-)$1	298	2	5	9.0000
GGG	chr19:5696873-5697111(-)$1	238	5	8	9.0000
GGG	chr16:87753366-87753647(-)$1	281	27	30	9.0000
GGG	chr11:63858023-63858252(-)$1	229	36	39	9.0000
GGG	chr1:31886169-31886426(+)$1	257	32	35	9.0000
GGG	chr1:18020200-18020463(+)$1	263	132	135	9.0000
GGG	chr8:144580611-144580870(-)$1	259	18	21	9.0000
GGG	chr19:1104129-1104387(+)$1	258	37	40	9.0000
GGG	chr17:7745757-7745982(+)$1	225	39	42	9.0000
GGG	chr16:89360565-89360797(-)$1	232	31	34	9.0000
GGG	chr11:72462045-72462284(-)$1	239	98	101	9.0000
GGG	chr10:80831638-80831882(+)$1	244	83	86	9.0000
GGG	chr1:3461763-3461984(-)$1	221	14	17	9.0000
GGG	chr7:92464571-92464821(-)$1	250	4	7	9.0000
GGG	chr16:88567994-88568223(+)$1	229	3	6	9.0000
GGG	chr16:88564963-88565203(+)$1	240	36	39	9.0000
GGG	chr16:88539851-88540098(+)$1	247	12	15	9.0000
GGG	chr17:80192667-80192885(+)$1	218	0	3	9.0000
GGG	chr4:1187699-1187925(-)$1	226	43	46	9.0000
GGG	chr20:60936088-60936347(-)$1	259	45	48	9.0000
GGG	chr11:2160401-2160609(-)$1	208	103	106	9.0000
GGG	chr14:56047027-56047318(+)$1	291	43	46	9.0000
GGG	chr1:2201349-2201588(+)$1	239	5	8	9.0000
GGG	chr17:75415393-75415679(+)$1	286	61	64	9.0000
GGG	chr1:27919807-27920034(-)$1	227	1	4	9.0000
GGG	chr2:62933124-62933358(+)$1	234	24	27	9.0000
GGG	chr22:37956717-37956963(+)$1	246	14	17	9.0000
GGG	chr9:71788770-71789039(+)$1	269	51	54	9.0000
GGG	chr7:101512092-101512359(+)$1	267	0	3	9.0000
GGG	chr2:242054860-242055194(-)$1	334	5	8	9.0000
GGG	chr19:41195404-41195663(-)$1	259	19	22	9.0000
GGG	chr17:58468883-58469193(-)$1	310	8	11	9.0000
GGG	chr13:113368167-113368396(+)$1	229	10	13	9.0000
GGG	chr7:993813-994081(-)$1	268	15	18	9.0000
GGG	chr19:14664331-14664585(+)$1	254	30	33	9.0000
GGG	chr20:60893606-60893930(-)$1	324	168	171	9.0000
GGG	chr5:176898048-176898301(-)$1	253	19	22	9.0000
GGG	chr17:79965412-79965635(+)$1	223	37	40	9.0000
GGG	chr20:35169490-35169782(-)$1	292	18	21	9.0000
GGG	chr1:3451246-3451473(-)$1	227	17	20	9.0000
ggg	chr16:87416720-87416974(-)$1	254	0	3	9.0000

#otherMatches

#Struct PSSM
cc[	chr19:928696-928928(+)$1	232	3	6	9.0000
ppp	chr17:79961824-79962039(+)$1	215	12	15	9.0000
eee	chr9:136833634-136833870(-)$1	236	84	87	9.0000
fff	chr17:79962162-79962405(+)$1	243	61	64	9.0000
ddd	chr15:74701945-74702207(-)$1	262	15	18	9.0000
eee	chr17:79135468-79135720(-)$1	252	16	19	9.0000
DDD	chr19:7709175-7709488(+)$1	313	7	10	9.0000
JJJ	chr20:62284206-62284477(-)$1	271	2	5	9.0000
EEE	chr18:46067354-46067637(+)$1	283	31	34	9.0000
dd]	chr8:145018864-145019115(-)$1	251	217	220	9.0000
ddd	chr21:46860692-46860945(+)$1	253	65	68	9.0000
EKK	chr7:5434139-5434405(-)$1	266	13	16	9.0000
Fee	chr16:977990-978326(-)$1	336	18	21	9.0000
]dd	chr13:24152890-24153180(+)$1	290	74	77	9.0000
FFF	chr1:154981752-154982031(+)$1	279	4	7	9.0000
fff	chr9:140311217-140311504(-)$1	287	18	21	9.0000
ccc	chr7:150077100-150077355(+)$1	255	1	4	9.0000
ccc	chr20:60911161-60911418(-)$1	257	12	15	9.0000
ffc	chr13:50699231-50699456(-)$1	225	49	52	9.0000
ggg	chr17:77953422-77953660(-)$1	238	84	87	9.0000
bb[	chr19:1267070-1267379(+)$1	309	64	67	9.0000
B{C	chr19:4060898-4061152(-)$1	254	11	14	9.0000
EEE	chr14:105796741-105797008(+)$1	267	0	3	9.0000
ggg	chr19:1412420-1412657(+)$1	237	48	51	9.0000
eee	chr9:138981196-138981443(-)$1	247	1	4	9.0000
III	chr17:79884914-79885199(-)$1	285	17	20	9.0000
hhh	chr3:183353496-183353817(+)$1	321	44	47	9.0000
ccc	chr16:8961009-8961268(-)$1	259	91	94	9.0000
PPP	chr20:62406577-62406836(-)$1	259	12	15	9.0000
lll	chr12:133097511-133097737(+)$1	226	6	9	9.0000
FFF	chr1:3464411-3464654(-)$1	243	15	18	9.0000
CCC	chr2:240230495-240230742(-)$1	247	9	12	9.0000
hhh	chr17:17614721-17614981(+)$1	260	26	29	9.0000
]ee	chr17:170805-171058(-)$1	253	78	81	9.0000
mmm	chr19:4061844-4062051(-)$1	207	22	25	9.0000
III	chr20:36017313-36017568(+)$1	255	18	21	9.0000
mcc	chr19:13262678-13262932(+)$1	254	65	68	9.0000
b""	chr14:105157870-105158103(+)$1	233	58	61	9.0000
EE{	chr9:136822510-136822826(-)$1	316	4	7	9.0000
fff	chr17:80189644-80189899(+)$1	255	69	72	9.0000
a]g	chr17:78247864-78248135(+)$1	271	12	15	9.0000
DDD	chr9:136545564-136545803(-)$1	239	21	24	9.0000
[ee	chr12:133101062-133101280(+)$1	218	9	12	9.0000
mmc	chr9:136553140-136553387(-)$1	247	82	85	9.0000
:BB	chr16:87357404-87357641(-)$1	237	2	5	9.0000
CCC	chr1:2198994-2199252(+)$1	258	3	6	9.0000
:ee	chr20:35992828-35993069(+)$1	241	28	31	9.0000
:::	chr16:1122881-1123151(-)$1	270	3	6	9.0000
HHH	chr19:1156778-1157046(-)$1	268	22	25	9.0000
bb[	chr20:17661991-17662264(-)$1	273	3	6	9.0000
ECC	chr9:136793976-136794226(-)$1	250	24	27	9.0000
bmm	chr20:62688016-62688318(+)$1	302	12	15	9.0000
fff	chr1:960009-960238(+)$1	229	27	30	9.0000
EEK	chr16:2280440-2280703(+)$1	263	9	12	9.0000
:dd	chr17:76117909-76118151(-)$1	242	0	3	9.0000
LLL	chr21:46886467-46886762(+)$1	295	8	11	9.0000
eee	chr11:126233194-126233452(+)$1	258	100	103	9.0000
fff	chr1:151430903-151431201(-)$1	298	2	5	9.0000
hhh	chr19:5696873-5697111(-)$1	238	5	8	9.0000
GGG	chr16:87753366-87753647(-)$1	281	27	30	9.0000
ccc	chr11:63858023-63858252(-)$1	229	36	39	9.0000
fff	chr1:31886169-31886426(+)$1	257	32	35	9.0000
ccc	chr1:18020200-18020463(+)$1	263	132	135	9.0000
iii	chr8:144580611-144580870(-)$1	259	18	21	9.0000
d]d	chr19:1104129-1104387(+)$1	258	37	40	9.0000
"ff	chr17:7745757-7745982(+)$1	225	39	42	9.0000
IA{	chr16:89360565-89360797(-)$1	232	31	34	9.0000
ddd	chr11:72462045-72462284(-)$1	239	98	101	9.0000
a]a	chr10:80831638-80831882(+)$1	244	83	86	9.0000
fff	chr1:3461763-3461984(-)$1	221	14	17	9.0000
BNN	chr7:92464571-92464821(-)$1	250	4	7	9.0000
{CC	chr16:88567994-88568223(+)$1	229	3	6	9.0000
EEE	chr16:88564963-88565203(+)$1	240	36	39	9.0000
CCC	chr16:88539851-88540098(+)$1	247	12	15	9.0000
:::	chr17:80192667-80192885(+)$1	218	0	3	9.0000
eee	chr4:1187699-1187925(-)$1	226	43	46	9.0000
hhh	chr20:60936088-60936347(-)$1	259	45	48	9.0000
eee	chr11:2160401-2160609(-)$1	208	103	106	9.0000
occ	chr14:56047027-56047318(+)$1	291	43	46	9.0000
fff	chr1:2201349-2201588(+)$1	239	5	8	9.0000
33d	chr17:75415393-75415679(+)$1	286	61	64	9.0000
EEE	chr1:27919807-27920034(-)$1	227	1	4	9.0000
{AK	chr2:62933124-62933358(+)$1	234	24	27	9.0000
GKK	chr22:37956717-37956963(+)$1	246	14	17	9.0000
hhh	chr9:71788770-71789039(+)$1	269	51	54	9.0000
:::	chr7:101512092-101512359(+)$1	267	0	3	9.0000
bb[	chr2:242054860-242055194(-)$1	334	5	8	9.0000
HHE	chr19:41195404-41195663(-)$1	259	19	22	9.0000
FFF	chr17:58468883-58469193(-)$1	310	8	11	9.0000
EEE	chr13:113368167-113368396(+)$1	229	10	13	9.0000
{EE	chr7:993813-994081(-)$1	268	15	18	9.0000
ggg	chr19:14664331-14664585(+)$1	254	30	33	9.0000
==#	chr20:60893606-60893930(-)$1	324	168	171	9.0000
cee	chr5:176898048-176898301(-)$1	253	19	22	9.0000
BAD	chr17:79965412-79965635(+)$1	223	37	40	9.0000
eee	chr20:35169490-35169782(-)$1	292	18	21	9.0000
uuu	chr1:3451246-3451473(-)$1	227	17	20	9.0000
:::	chr16:87416720-87416974(-)$1	254	0	3	9.0000

#DB
((.	chr19:928696-928928(+)$1	1	3	6	9.0000
...	chr17:79961824-79962039(+)$1	1	12	15	9.0000
)))	chr9:136833634-136833870(-)$1	1	84	87	9.0000
(((	chr17:79962162-79962405(+)$1	1	61	64	9.0000
(((	chr15:74701945-74702207(-)$1	1	15	18	9.0000
(((	chr17:79135468-79135720(-)$1	1	16	19	9.0000
(((	chr19:7709175-7709488(+)$1	1	7	10	9.0000
(((	chr20:62284206-62284477(-)$1	1	2	5	9.0000
(((	chr18:46067354-46067637(+)$1	1	31	34	9.0000
)).	chr8:145018864-145019115(-)$1	1	217	220	9.0000
)))	chr21:46860692-46860945(+)$1	1	65	68	9.0000
(..	chr7:5434139-5434405(-)$1	1	13	16	9.0000
(((	chr16:977990-978326(-)$1	1	18	21	9.0000
.))	chr13:24152890-24153180(+)$1	1	74	77	9.0000
(((	chr1:154981752-154982031(+)$1	1	4	7	9.0000
(((	chr9:140311217-140311504(-)$1	1	18	21	9.0000
(((	chr7:150077100-150077355(+)$1	1	1	4	9.0000
(((	chr20:60911161-60911418(-)$1	1	12	15	9.0000
(((	chr13:50699231-50699456(-)$1	1	49	52	9.0000
)))	chr17:77953422-77953660(-)$1	1	84	87	9.0000
((.	chr19:1267070-1267379(+)$1	1	64	67	9.0000
(.(	chr19:4060898-4061152(-)$1	1	11	14	9.0000
(((	chr14:105796741-105797008(+)$1	1	0	3	9.0000
(((	chr19:1412420-1412657(+)$1	1	48	51	9.0000
(((	chr9:138981196-138981443(-)$1	1	1	4	9.0000
(((	chr17:79884914-79885199(-)$1	1	17	20	9.0000
(((	chr3:183353496-183353817(+)$1	1	44	47	9.0000
)))	chr16:8961009-8961268(-)$1	1	91	94	9.0000
...	chr20:62406577-62406836(-)$1	1	12	15	9.0000
...	chr12:133097511-133097737(+)$1	1	6	9	9.0000
(((	chr1:3464411-3464654(-)$1	1	15	18	9.0000
(((	chr2:240230495-240230742(-)$1	1	9	12	9.0000
)))	chr17:17614721-17614981(+)$1	1	26	29	9.0000
.))	chr17:170805-171058(-)$1	1	78	81	9.0000
...	chr19:4061844-4062051(-)$1	1	22	25	9.0000
(((	chr20:36017313-36017568(+)$1	1	18	21	9.0000
.))	chr19:13262678-13262932(+)$1	1	65	68	9.0000
(..	chr14:105157870-105158103(+)$1	1	58	61	9.0000
((.	chr9:136822510-136822826(-)$1	1	4	7	9.0000
(((	chr17:80189644-80189899(+)$1	1	69	72	9.0000
).)	chr17:78247864-78248135(+)$1	1	12	15	9.0000
(((	chr9:136545564-136545803(-)$1	1	21	24	9.0000
.((	chr12:133101062-133101280(+)$1	1	9	12	9.0000
..)	chr9:136553140-136553387(-)$1	1	82	85	9.0000
.((	chr16:87357404-87357641(-)$1	1	2	5	9.0000
(((	chr1:2198994-2199252(+)$1	1	3	6	9.0000
.((	chr20:35992828-35993069(+)$1	1	28	31	9.0000
...	chr16:1122881-1123151(-)$1	1	3	6	9.0000
(((	chr19:1156778-1157046(-)$1	1	22	25	9.0000
((.	chr20:17661991-17662264(-)$1	1	3	6	9.0000
(((	chr9:136793976-136794226(-)$1	1	24	27	9.0000
(..	chr20:62688016-62688318(+)$1	1	12	15	9.0000
(((	chr1:960009-960238(+)$1	1	27	30	9.0000
((.	chr16:2280440-2280703(+)$1	1	9	12	9.0000
.((	chr17:76117909-76118151(-)$1	1	0	3	9.0000
...	chr21:46886467-46886762(+)$1	1	8	11	9.0000
)))	chr11:126233194-126233452(+)$1	1	100	103	9.0000
(((	chr1:151430903-151431201(-)$1	1	2	5	9.0000
(((	chr19:5696873-5697111(-)$1	1	5	8	9.0000
(((	chr16:87753366-87753647(-)$1	1	27	30	9.0000
)))	chr11:63858023-63858252(-)$1	1	36	39	9.0000
)))	chr1:31886169-31886426(+)$1	1	32	35	9.0000
)))	chr1:18020200-18020463(+)$1	1	132	135	9.0000
(((	chr8:144580611-144580870(-)$1	1	18	21	9.0000
).)	chr19:1104129-1104387(+)$1	1	37	40	9.0000
.((	chr17:7745757-7745982(+)$1	1	39	42	9.0000
((.	chr16:89360565-89360797(-)$1	1	31	34	9.0000
)))	chr11:72462045-72462284(-)$1	1	98	101	9.0000
).)	chr10:80831638-80831882(+)$1	1	83	86	9.0000
(((	chr1:3461763-3461984(-)$1	1	14	17	9.0000
(..	chr7:92464571-92464821(-)$1	1	4	7	9.0000
.((	chr16:88567994-88568223(+)$1	1	3	6	9.0000
(((	chr16:88564963-88565203(+)$1	1	36	39	9.0000
(((	chr16:88539851-88540098(+)$1	1	12	15	9.0000
...	chr17:80192667-80192885(+)$1	1	0	3	9.0000
)))	chr4:1187699-1187925(-)$1	1	43	46	9.0000
(((	chr20:60936088-60936347(-)$1	1	45	48	9.0000
)))	chr11:2160401-2160609(-)$1	1	103	106	9.0000
.))	chr14:56047027-56047318(+)$1	1	43	46	9.0000
(((	chr1:2201349-2201588(+)$1	1	5	8	9.0000
..)	chr17:75415393-75415679(+)$1	1	61	64	9.0000
(((	chr1:27919807-27920034(-)$1	1	1	4	9.0000
.(.	chr2:62933124-62933358(+)$1	1	24	27	9.0000
(..	chr22:37956717-37956963(+)$1	1	14	17	9.0000
(((	chr9:71788770-71789039(+)$1	1	51	54	9.0000
...	chr7:101512092-101512359(+)$1	1	0	3	9.0000
((.	chr2:242054860-242055194(-)$1	1	5	8	9.0000
(((	chr19:41195404-41195663(-)$1	1	19	22	9.0000
(((	chr17:58468883-58469193(-)$1	1	8	11	9.0000
(((	chr13:113368167-113368396(+)$1	1	10	13	9.0000
.((	chr7:993813-994081(-)$1	1	15	18	9.0000
(((	chr19:14664331-14664585(+)$1	1	30	33	9.0000
((.	chr20:60893606-60893930(-)$1	1	168	171	9.0000
)))	chr5:176898048-176898301(-)$1	1	19	22	9.0000
(((	chr17:79965412-79965635(+)$1	1	37	40	9.0000
(((	chr20:35169490-35169782(-)$1	1	18	21	9.0000
...	chr1:3451246-3451473(-)$1	1	17	20	9.0000
...	chr16:87416720-87416974(-)$1	1	0	3	9.0000

#PSSM
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_transcript_m2_run1.nuc.txt

#NT
ccccuuucuuuuccucuucuuccuccuccAC	chr10:105544342-105544602(-)$1	260	102	133	24.6326
cuccuuccccuccuuccccuccuucccuucc	chr14:95079395-95079672(+)$1	277	112	143	35.9591
CCCCUCCCUCCCUCAGCCCCCCAGUCCUCCC	chr16:57697966-57698282(+)$1	316	108	139	26.7755
cuccuuucccuucccuuacuccccccuuccc	chr16:15216637-15216885(-)$1	248	146	177	31.2653
CUccuuccucccccuucccucccccuuuuuu	chr11:10830250-10830476(-)$1	226	99	130	25.2448
CUCCCCGCUCCCCUCCCCCCGGCUCCGGCCC	chr8:101733810-101734025(-)$1	215	110	141	24.2244
cucauuuccccaucucuccucacccccuccc	chr20:60892875-60893154(-)$1	279	21	52	27.7959
GCCCCCUCGCCCGGCCCGCCCCCACCCUUCC	chrX:153668439-153668682(+)$1	243	71	102	20.5510
cccccuccucccucucuccugccggccccuc	chr16:73070307-73070569(-)$1	262	13	44	24.0204
cccuccccucccuucccuucccuuccuuccc	chr2:153480553-153480810(+)$1	257	54	85	25.8571
cucccuucccucuccuucuuuccucccccca	chr20:21188096-21188334(+)$1	238	13	44	24.8367
CUUCUUUUUUUCCCUCCCCCCCCUUCCCCCC	chr2:181845536-181845799(+)$1	263	38	69	27.4897
ccccuuuccccucccccucuccuccccUCCC	chr2:47707270-47707608(+)$1	338	178	209	38.6122
cuccucuccccucccccucuccuuuccccuc	chr15:41943950-41944210(+)$1	260	3	34	31.4693
ccccagccuccuuccccccaccugccauccc	chr14:99976836-99977123(+)$1	287	8	39	26.8775
CCCCUUCCUCCCCAUCCUCCUCUCCCCUCUC	chr9:96013963-96014228(+)$1	265	104	135	30.8571
CUCCUUUCUUCCCCCCACCCUCCCCCCAUAC	chrX:107850524-107850792(+)$1	268	173	204	25.9591
CCCCUUUCUGCUUCCCUCACCCCUCCUACCC	chr6:5748233-5748513(+)$1	280	93	124	26.5714
auccuucccccgccuccaccccccgccccca	chr1:1076809-1077101(+)$1	292	29	60	24.0204
UUCCACCCACCCACCCCGCUCCCCCACCCCC	chr1:2125712-2126021(-)$1	309	226	257	23.4081
uccuuccuuccucccucccucccucccuccc	chr1:180628151-180628428(+)$1	277	224	255	29.3265
cuccuuucccuuccuuucccccuucccuucc	chr6:25293811-25294121(+)$1	310	101	132	30.5510
auccuugccuccucuccacccccucccuccu	chr13:30117863-30118110(-)$1	247	155	186	29.4285
cuucucucuccugcggcccagccucccucuc	chr19:56671790-56672074(+)$1	284	70	101	23.6122
cuccuuucuccccuccccucccuucuccccu	chr11:3933285-3933548(+)$1	263	118	149	28.8163
cccccuccaccccacccaucaccccccucca	chr22:47523837-47524097(+)$1	260	91	122	23.4081
ccccuuccccuuccccuuccccuucccuugc	chr4:53498007-53498336(-)$1	329	125	156	28.5102
cucucucucuccccccuccuucuucucuccc	chr17:35503487-35503742(-)$1	255	79	110	24.4285
ccccuuccccuugccccucauccuccuuccc	chr7:105501391-105501672(-)$1	281	129	160	31.7755
cuccucuccaucccuccccuccaucccuccc	chr9:136756683-136756949(-)$1	266	90	121	35.5510
CUCCUCCUUCCCUCCCAUCGUCCUCCUCCAC	chr19:56671544-56671816(+)$1	272	112	143	23.8163
uuccucuuuccuuccccucuuucuccuuccc	chr14:89826784-89827036(-)$1	252	197	228	26.3673
CUCCCUCCCUCCCCUGCCCUCUCUCCAUCCC	chrX:153031740-153031993(+)$1	253	180	211	30.2448
uuccucucccuccccacgucccuuccccccc	chr16:50589775-50590020(+)$1	245	65	96	25.9591
cuccuuccucccuccucccuccuuccaucuc	chr17:80974440-80974767(-)$1	327	99	130	35.3469
cucuuuccuuccccugccuucccuuccuucc	chr17:57206754-57207016(-)$1	262	134	165	25.6530
cccccuucucccuccccccuucucccucccc	chr7:77397017-77397307(+)$1	290	121	152	32.7959
cccccacucccugcuccacccccccacuccc	chr19:912361-912601(-)$1	240	62	93	23.5102
cucccuuccuuucuuccucuuccuuccuccu	chr3:188596981-188597237(+)$1	256	62	93	24.3265
augcucucucucccuccucccccucacucuc	chr20:33902925-33903266(-)$1	341	179	210	25.9591
uagcuuccucucccuccucuuccuccugccc	chr11:848574-848828(+)$1	254	92	123	25.2448
cccuuccccaucaccccacucccucccucug	chr12:105526783-105527070(+)$1	287	129	160	23.5102
uucccuucucccuucccccuuccuccuucuc	chr13:50125096-50125422(-)$1	326	94	125	31.0612
ccaccuucccuuuccucccucucucccuccu	chr7:105571664-105571999(+)$1	335	104	135	24.3265
cuccccucucccuUAACCCUCCAUCCUUCCC	chr22:47415568-47415926(+)$1	358	316	347	28.6122
cuccuccuccuccuccucccuccucccuccu	chr9:6484301-6484591(+)$1	290	91	122	28.4081
cuuccuccuucccucccACUCCCCCCCACCC	chr12:468821-469134(-)$1	313	183	214	29.0204
CCUCUUUGGccuuccccuuuccuccccuccc	chr2:101662989-101663274(-)$1	285	97	128	24.7346

#otherMatches

#Struct PSSM
:::::::::::::::::::::::::::::::	chr16:69308822-69309126(+)$1	304	69	100	23.6122
:::::::::::::::::::::::::::::::	chr10:105544342-105544602(-)$1	260	102	133	24.6326
:::::::::::::::::::::::::::::::	chr14:95079395-95079672(+)$1	277	112	143	35.9591
{ACCCBBFFFFFFDDDDHHHHHHHH::::::	chr16:57697966-57698282(+)$1	316	108	139	26.7755
:::::::::::::::::::::::::::::::	chr16:15216637-15216885(-)$1	248	146	177	31.2653
bbbb22eeeee7777777dddd22ccc4444	chr11:10830250-10830476(-)$1	226	99	130	25.2448
CC{EEEEE::::::::::::cccmmmmccc:	chr8:101733810-101734025(-)$1	215	110	141	24.2244
:::::::::::::::::::::::::::::::	chr20:60892875-60893154(-)$1	279	21	52	27.7959
cccrrrrrrrrrccceeeeedddd22fffff	chrX:153668439-153668682(+)$1	243	71	102	20.5510
:::::::::::::::gggggggdddd"""cc	chr16:73070307-73070569(-)$1	262	13	44	24.0204
:::::::::::::::::::::::::::::==	chr2:153480553-153480810(+)$1	257	54	85	25.8571
:::::::::::::::::::::::::::::::	chr20:21188096-21188334(+)$1	238	13	44	24.8367
eee::::::::::::DDDDJJJJJJJJJJJB	chr2:181845536-181845799(+)$1	263	38	69	27.4897
:::::::::::::::::::::::::::::::	chr2:47707270-47707608(+)$1	338	178	209	38.6122
:::::::::::::::::::::::::::::::	chr15:41943950-41944210(+)$1	260	3	34	31.4693
KKDDDD{BBCCC{DDDD::::::::::::::	chr14:99976836-99977123(+)$1	287	8	39	26.8775
22bb::::::::eeeee^^^^^^^^^^^^^^	chr9:96013963-96014228(+)$1	265	104	135	30.8571
:::::::::::::::::::::::::::::::	chrX:107850524-107850792(+)$1	268	173	204	25.9591
zzzzeeeee::::::::::::::::::::::	chr6:5748233-5748513(+)$1	280	93	124	26.5714
:::::::::::::::::::::::::::::::	chr1:1076809-1077101(+)$1	292	29	60	24.0204
::::::::::::::::::::::::::::::d	chr1:2125712-2126021(-)$1	309	226	257	23.4081
:::::::::::::::::::::::::::::::	chr1:180628151-180628428(+)$1	277	224	255	29.3265
:::::::::::::::::::::::::::::::	chr6:25293811-25294121(+)$1	310	101	132	30.5510
:::::DDDDDDDD\\\\\\\\\AYYBB}BBY	chr13:30117863-30118110(-)$1	247	155	186	29.4285
EE{BB{BB{BB{A{DDDDKKDDDDACCCMMM	chr19:56671790-56672074(+)$1	284	70	101	23.6122
:::::::::::::::::::::::::::::::	chr11:3933285-3933548(+)$1	263	118	149	28.8163
:::::::::::::::::::::::::::::::	chr22:47523837-47524097(+)$1	260	91	122	23.4081
::::::::::::::::::::::dddd[ccct	chr4:53498007-53498336(-)$1	329	125	156	28.5102
:::::::::::::::::::::::::::::::	chr17:35503487-35503742(-)$1	255	79	110	24.4285
+++++++++bb[ddddzzzzzzzzzzzzzzz	chr7:105501391-105501672(-)$1	281	129	160	31.7755
:::::::::::::::::::::::::::::::	chr9:136756683-136756949(-)$1	266	90	121	35.5510
:::::::::::::::::::::::::::::::	chr19:56671544-56671816(+)$1	272	112	143	23.8163
:::::::::::GGGGGGG?????CCC@@@@@	chr14:89826784-89827036(-)$1	252	197	228	26.3673
::::::::A}GGGGGGGZZZCCC}FFFFFF}	chrX:153031740-153031993(+)$1	253	180	211	30.2448
c:::IIIIIIIII::::::::::::::::::	chr16:50589775-50590020(+)$1	245	65	96	25.9591
:::::::::::::::::::::::::::::::	chr17:80974440-80974767(-)$1	327	99	130	35.3469
:::::::::::::::::::::::::::::::	chr17:57206754-57207016(-)$1	262	134	165	25.6530
:::::::::::::::::::::::::::::::	chr7:77397017-77397307(+)$1	290	121	152	32.7959
:::::::::::ccc''''''''dddd&&&&&	chr19:912361-912601(-)$1	240	62	93	23.5102
:EEEEE:::::::::::::::::::::::::	chr3:188596981-188597237(+)$1	256	62	93	24.3265
22ccc::::::::::::::::::::::::::	chr20:33902925-33903266(-)$1	341	179	210	25.9591
:bb[eeeee++++++++++++ccc"""dddd	chr11:848574-848828(+)$1	254	92	123	25.2448
::::::::::::::::::::::::::::::C	chr12:105526783-105527070(+)$1	287	129	160	23.5102
ttttttdddd333ccc:::::::::::::::	chr13:50125096-50125422(-)$1	326	94	125	31.0612
>>>>>>>>>>>eeeee4444cccdddd::::	chr7:105571664-105571999(+)$1	335	104	135	24.3265
:::::::::::::::::::::::::::::::	chr22:47415568-47415926(+)$1	358	316	347	28.6122
a]cccbb]bb]bb]bb]bbbb::::::::::	chr9:6484301-6484591(+)$1	290	91	122	28.4081
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:468821-469134(-)$1	313	183	214	29.0204
gg:::::bboooooobb::::::::::::::	chr2:101662989-101663274(-)$1	285	97	128	24.7346

#DB
...............................	chr16:69308822-69309126(+)$1	1	69	100	23.6122
...............................	chr10:105544342-105544602(-)$1	1	102	133	24.6326
...............................	chr14:95079395-95079672(+)$1	1	112	143	35.9591
.((((((((((((((((((((((((......	chr16:57697966-57698282(+)$1	1	108	139	26.7755
...............................	chr16:15216637-15216885(-)$1	1	146	177	31.2653
))))..))))).......))))..)))....	chr11:10830250-10830476(-)$1	1	99	130	25.2448
((.(((((............(((....))).	chr8:101733810-101734025(-)$1	1	110	141	24.2244
...............................	chr20:60892875-60893154(-)$1	1	21	52	27.7959
(((.........))))))))))))..)))))	chrX:153668439-153668682(+)$1	1	71	102	20.5510
...............(((((((((((...((	chr16:73070307-73070569(-)$1	1	13	44	24.0204
.............................((	chr2:153480553-153480810(+)$1	1	54	85	25.8571
...............................	chr20:21188096-21188334(+)$1	1	13	44	24.8367
)))............((((((((((((((((	chr2:181845536-181845799(+)$1	1	38	69	27.4897
...............................	chr2:47707270-47707608(+)$1	1	178	209	38.6122
...............................	chr15:41943950-41944210(+)$1	1	3	34	31.4693
..((((.(((((.((((..............	chr14:99976836-99977123(+)$1	1	8	39	26.8775
..))........(((((..............	chr9:96013963-96014228(+)$1	1	104	135	30.8571
...............................	chrX:107850524-107850792(+)$1	1	173	204	25.9591
....)))))......................	chr6:5748233-5748513(+)$1	1	93	124	26.5714
...............................	chr1:1076809-1077101(+)$1	1	29	60	24.0204
..............................(	chr1:2125712-2126021(-)$1	1	226	257	23.4081
...............................	chr1:180628151-180628428(+)$1	1	224	255	29.3265
...............................	chr6:25293811-25294121(+)$1	1	101	132	30.5510
.....)))))))).........)..)).)).	chr13:30117863-30118110(-)$1	1	155	186	29.4285
((.((.((.((.(.((((..((((((((...	chr19:56671790-56672074(+)$1	1	70	101	23.6122
...............................	chr11:3933285-3933548(+)$1	1	118	149	28.8163
...............................	chr22:47523837-47524097(+)$1	1	91	122	23.4081
......................((((.(((.	chr4:53498007-53498336(-)$1	1	125	156	28.5102
...............................	chr17:35503487-35503742(-)$1	1	79	110	24.4285
.........((.((((...............	chr7:105501391-105501672(-)$1	1	129	160	31.7755
...............................	chr9:136756683-136756949(-)$1	1	90	121	35.5510
...............................	chr19:56671544-56671816(+)$1	1	112	143	23.8163
...........))))))).....))).....	chr14:89826784-89827036(-)$1	1	197	228	26.3673
........).)))))))...))).)))))).	chrX:153031740-153031993(+)$1	1	180	211	30.2448
)...(((((((((..................	chr16:50589775-50590020(+)$1	1	65	96	25.9591
...............................	chr17:80974440-80974767(-)$1	1	99	130	35.3469
...............................	chr17:57206754-57207016(-)$1	1	134	165	25.6530
...............................	chr7:77397017-77397307(+)$1	1	121	152	32.7959
...........(((........((((.....	chr19:912361-912601(-)$1	1	62	93	23.5102
.(((((.........................	chr3:188596981-188597237(+)$1	1	62	93	24.3265
..)))..........................	chr20:33902925-33903266(-)$1	1	179	210	25.9591
.((.(((((............(((...((((	chr11:848574-848828(+)$1	1	92	123	25.2448
..............................)	chr12:105526783-105527070(+)$1	1	129	160	23.5102
......))))...)))...............	chr13:50125096-50125422(-)$1	1	94	125	31.0612
...........)))))....)))))))....	chr7:105571664-105571999(+)$1	1	104	135	24.3265
...............................	chr22:47415568-47415926(+)$1	1	316	347	28.6122
).))))).)).)).)).))))..........	chr9:6484301-6484591(+)$1	1	91	122	28.4081
...............................	chr12:468821-469134(-)$1	1	183	214	29.0204
)).....((......))..............	chr2:101662989-101663274(-)$1	1	97	128	24.7346

#PSSM
c : 0.59	C : 0.20	u : 0.10	a : 0.06	G : 0.02	U : 0.02	
u : 0.46	c : 0.26	U : 0.14	C : 0.10	a : 0.02	
c : 0.65	C : 0.18	u : 0.06	U : 0.04	g : 0.04	a : 0.02	
c : 0.63	C : 0.22	u : 0.12	a : 0.02	
u : 0.51	c : 0.24	U : 0.14	C : 0.06	a : 0.02	A : 0.02	
u : 0.51	c : 0.22	U : 0.12	C : 0.10	g : 0.02	a : 0.02	
c : 0.38	u : 0.36	C : 0.10	U : 0.10	G : 0.02	g : 0.02	
c : 0.65	C : 0.16	u : 0.12	U : 0.04	G : 0.02	
c : 0.38	u : 0.36	U : 0.14	G : 0.04	A : 0.02	a : 0.02	C : 0.02	
c : 0.63	u : 0.12	C : 0.12	U : 0.06	a : 0.04	G : 0.02	
c : 0.48	u : 0.30	C : 0.18	U : 0.02	
c : 0.44	u : 0.30	C : 0.18	a : 0.02	U : 0.02	g : 0.02	
c : 0.44	u : 0.26	C : 0.10	U : 0.06	g : 0.06	G : 0.02	A : 0.02	a : 0.02	
c : 0.59	u : 0.16	C : 0.14	U : 0.04	G : 0.02	A : 0.02	a : 0.02	
c : 0.44	u : 0.30	C : 0.12	U : 0.06	A : 0.04	g : 0.02	
c : 0.57	C : 0.16	u : 0.14	G : 0.04	g : 0.04	a : 0.02	A : 0.02	
c : 0.59	u : 0.18	C : 0.16	A : 0.04	U : 0.02	
c : 0.38	u : 0.22	C : 0.14	a : 0.12	G : 0.04	U : 0.04	g : 0.02	A : 0.02	
c : 0.59	C : 0.22	u : 0.16	A : 0.02	
u : 0.44	c : 0.24	C : 0.14	U : 0.08	a : 0.06	G : 0.02	
c : 0.48	u : 0.20	C : 0.16	U : 0.06	g : 0.04	G : 0.02	a : 0.02	
c : 0.69	C : 0.20	u : 0.04	G : 0.02	a : 0.02	U : 0.02	
c : 0.44	u : 0.28	C : 0.18	A : 0.04	U : 0.02	a : 0.02	
u : 0.53	c : 0.18	U : 0.12	C : 0.08	g : 0.04	G : 0.02	A : 0.02	
c : 0.65	C : 0.20	u : 0.06	U : 0.04	g : 0.04	
c : 0.65	C : 0.22	u : 0.06	a : 0.04	A : 0.02	
c : 0.53	u : 0.18	C : 0.14	U : 0.06	a : 0.04	G : 0.02	A : 0.02	
u : 0.55	c : 0.16	U : 0.12	C : 0.06	A : 0.06	G : 0.02	g : 0.02	
c : 0.61	C : 0.22	u : 0.12	U : 0.04	
c : 0.53	C : 0.20	u : 0.16	A : 0.06	U : 0.02	g : 0.02	
c : 0.51	C : 0.28	u : 0.12	a : 0.06	g : 0.02	

#score	1344.3469387755106
#seq	49
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_transcript_m1_run1.nuc.txt

#NT
GGGGCUGGA	chr20:61273830-61274050(+)$1	220	164	173	16.0151
GGGGUUGGG	chr20:61584527-61584798(+)$1	271	130	139	19.3484
GGGGACGGG	chr14:105248278-105248531(-)$1	253	4	13	14.4999
GGGGCUGAG	chr12:133370545-133370808(-)$1	263	38	47	15.0303
GGGCUUGGG	chr11:845847-846128(+)$1	281	131	140	15.1060
GGGGUUGGU	chr20:62514378-62514678(+)$1	300	56	65	15.2575
GGGGUGGGG	chr14:105905916-105906168(+)$1	252	94	103	16.3181
GGGGUUGGC	chr16:70712880-70713118(-)$1	238	126	135	15.6363
GGGGUCGGG	chr12:66219268-66219536(+)$1	268	133	142	16.1666
GGGGCUGGG	chr9:136799988-136800246(-)$1	258	119	128	19.8787
GCGGCUGGG	chr16:89969350-89969601(+)$1	251	169	178	15.7121
GGGACUGGG	chr1:1155431-1155658(-)$1	227	93	102	15.4848
GGGGUGGGG	chr16:22338658-22338909(+)$1	251	200	209	16.3181
GUGGUUGGG	chr2:241566171-241566431(+)$1	260	34	43	15.1060
GGGCUUGGG	chr16:88562989-88563230(+)$1	241	91	100	15.1060
GGGGUAGGG	chr17:80189283-80189517(+)$1	234	23	32	16.0151
GGGGCUUGG	chr14:105339813-105340039(+)$1	226	67	76	15.5606
ggggCUGGC	chr11:637269-637528(+)$1	259	118	127	16.1666
GGGGCUGGG	chr9:138981379-138981627(-)$1	248	92	101	19.8787
GGGGGUGGC	chr16:15237964-15238231(-)$1	267	144	153	14.1969
GGGGUCGGG	chr20:17662326-17662601(-)$1	275	86	95	16.1666
GUGGCUGGG	chr17:79966084-79966334(+)$1	250	11	20	15.6363
GGUGCUGGG	chr19:1168736-1168979(-)$1	243	91	100	15.8636
GGGGCUCGG	chr19:1409681-1409930(+)$1	249	175	184	15.4848
GGGGAGGGG	chr22:50870934-50871159(+)$1	225	19	28	14.6515
GCGGCUGGG	chr7:1578021-1578257(+)$1	236	112	121	15.7121
GGGGCUGGA	chr4:1240031-1240284(-)$1	253	65	74	16.0151
GGUGCUGGG	chr14:105892993-105893237(+)$1	244	220	229	15.8636
GGGGCUAGG	chr20:61587059-61587303(+)$1	244	31	40	15.4090
GGGGGUGGC	chr16:87888142-87888396(-)$1	254	150	159	14.1969
GGUGUUGGG	chr11:1594227-1594504(+)$1	277	89	98	15.3333
GGUGCUGGG	chr4:1237201-1237460(-)$1	259	184	193	15.8636
ggggcgggg	chr17:80188973-80189204(+)$1	231	49	58	16.8484
UGGGUUGGG	chr1:46767578-46767879(-)$1	301	146	155	14.7272
GGGGGUGGG	chr17:79064280-79064546(+)$1	266	217	226	17.9090
UGGGCUGGG	chr8:144596670-144596915(-)$1	245	38	47	15.2575
GGGGUCGGG	chr1:46767392-46767645(-)$1	253	74	83	16.1666
GGGGGCGGG	chr2:47402946-47403229(-)$1	283	113	122	14.7272
CGGGUUGGG	chr7:97912754-97913010(+)$1	256	153	162	14.6515
GAGGCUGGG	chr10:102758853-102759120(+)$1	267	45	54	15.7121
GGGGAUGGG	chr16:85647223-85647467(+)$1	244	40	49	17.6818
GGGGCAGGG	chr16:85671439-85671716(+)$1	277	87	96	16.5454
GGGGUGGGG	chr20:60934947-60935203(-)$1	256	39	48	16.3181
GGGGCUGGA	chr3:171758046-171758319(+)$1	273	35	44	16.0151
GCGGUUGGG	chr19:35491138-35491399(+)$1	261	99	108	15.1818
GGGGUUUGG	chr17:79963149-79963407(+)$1	258	25	34	15.0303
GGGGGUGGG	chr19:4061903-4062174(-)$1	271	101	110	17.9090
GGGGUUUGG	chr17:75485545-75485818(+)$1	273	187	196	15.0303
GAGGCUGGG	chr11:853880-854123(+)$1	243	9	18	15.7121
GGGGCUGGA	chr16:88561624-88561848(+)$1	224	85	94	16.0151
GGGGCUCGG	chr16:88829166-88829423(-)$1	257	87	96	15.4848
GGGCCUGGG	chr20:62295666-62295917(+)$1	251	89	98	15.6363
GGAGCUGGG	chr19:2130760-2131025(-)$1	265	159	168	15.4848
GGGGUUGGC	chr20:62515812-62516058(+)$1	246	188	197	15.6363
GGGGUUGGC	chr20:362260-362559(+)$1	299	78	87	15.6363
GGGCCUGGG	chr17:79965286-79965530(+)$1	244	50	59	15.6363
GGGGCCGGG	chr16:85676256-85676500(+)$1	244	88	97	16.6969
ggugcuggg	chr19:1411145-1411377(+)$1	232	146	155	15.8636
GGGGUGGGG	chr1:1242927-1243187(-)$1	260	108	117	16.3181
GGGGGAGGG	chr7:2677890-2678209(+)$1	319	98	107	14.5757
GAGGCUGGG	chr17:79964418-79964690(+)$1	272	116	125	15.7121
GGGGUGGGG	chr17:79966618-79966881(+)$1	263	100	109	16.3181
GGGGUAGGG	chr20:62582876-62583112(-)$1	236	166	175	16.0151
GGUGCUGGG	chr4:128982886-128983131(+)$1	245	168	177	15.8636
GGGACUGGG	chr9:139716418-139716762(+)$1	344	110	119	15.4848

#otherMatches

#Struct PSSM
GG{BB:::d	chr19:662837-663079(-)$1	242	99	108	16.3181
####ddddm	chr20:61273830-61274050(+)$1	220	164	173	16.0151
c[ccc[bb[	chr20:61584527-61584798(+)$1	271	130	139	19.3484
dddd[eeee	chr14:105248278-105248531(-)$1	253	4	13	14.4999
hhhhhhh[d	chr12:133370545-133370808(-)$1	263	38	47	15.0303
a]bb22ddd	chr11:845847-846128(+)$1	281	131	140	15.1060
e]ccc:ddd	chr20:62514378-62514678(+)$1	300	56	65	15.2575
eeeeeeeee	chr14:105905916-105906168(+)$1	252	94	103	16.3181
eeeee[iii	chr16:70712880-70713118(-)$1	238	126	135	15.6363
HHHHHHfff	chr12:66219268-66219536(+)$1	268	133	142	16.1666
dddd[a[bb	chr9:136799988-136800246(-)$1	258	119	128	19.8787
hhhhhhfff	chr16:89969350-89969601(+)$1	251	169	178	15.7121
====dddde	chr1:1155431-1155658(-)$1	227	93	102	15.4848
c[cccgggg	chr16:22338658-22338909(+)$1	251	200	209	16.3181
GGGGGG:gg	chr2:241566171-241566431(+)$1	260	34	43	15.1060
hhhhhh:hh	chr16:88562989-88563230(+)$1	241	91	100	15.1060
GGGGGKKEE	chr17:80189283-80189517(+)$1	234	23	32	16.0151
]eeeeeccc	chr14:105339813-105340039(+)$1	226	67	76	15.5606
JJJJJ::dd	chr11:637269-637528(+)$1	259	118	127	16.1666
ggggggg]d	chr9:138981379-138981627(-)$1	248	92	101	19.8787
dddd!!ddd	chr16:15237964-15238231(-)$1	267	144	153	14.1969
bCCC}CCCB	chr20:17662326-17662601(-)$1	275	86	95	16.1666
ee[ccc!!d	chr17:79966084-79966334(+)$1	250	11	20	15.6363
hh]ccc]ad	chr19:1168736-1168979(-)$1	243	91	100	15.8636
ggggggg[c	chr19:1409681-1409930(+)$1	249	175	184	15.4848
EEEEEffff	chr22:50870934-50871159(+)$1	225	19	28	14.6515
obb]bb]a]	chr7:1578021-1578257(+)$1	236	112	121	15.7121
dddd22eee	chr4:1240031-1240284(-)$1	253	65	74	16.0151
iiiicccDD	chr14:105892993-105893237(+)$1	244	220	229	15.8636
lldddd22g	chr20:61587059-61587303(+)$1	244	31	40	15.4090
gggg::eee	chr16:87888142-87888396(-)$1	254	150	159	14.1969
fffff:::E	chr11:1594227-1594504(+)$1	277	89	98	15.3333
ee[dddd!!	chr4:1237201-1237460(-)$1	259	184	193	15.8636
FFFFFdddd	chr17:80188973-80189204(+)$1	231	49	58	16.8484
iii[ddddo	chr1:46767578-46767879(-)$1	301	146	155	14.7272
dddd]eeee	chr17:79064280-79064546(+)$1	266	217	226	17.9090
mmiiiiiii	chr8:144596670-144596915(-)$1	245	38	47	15.2575
hhhhhhhh]	chr1:46767392-46767645(-)$1	253	74	83	16.1666
~~~HHHHHH	chr2:47402946-47403229(-)$1	283	113	122	14.7272
ccc]bb]ee	chr7:97912754-97913010(+)$1	256	153	162	14.6515
JJJJJJJJJ	chr10:102758853-102759120(+)$1	267	45	54	15.7121
+++++++++	chr16:85647223-85647467(+)$1	244	40	49	17.6818
ECCCEEEEE	chr16:85671439-85671716(+)$1	277	87	96	16.5454
[ccc[dddd	chr20:60934947-60935203(-)$1	256	39	48	16.3181
BBFFFFFF{	chr3:171758046-171758319(+)$1	273	35	44	16.0151
ddeeeee[b	chr19:35491138-35491399(+)$1	261	99	108	15.1818
HHHHHH{FF	chr17:79963149-79963407(+)$1	258	25	34	15.0303
cchhhhhhh	chr19:4061903-4062174(-)$1	271	101	110	17.9090
iiii::ccc	chr17:75485545-75485818(+)$1	273	187	196	15.0303
ooooeeeee	chr11:853880-854123(+)$1	243	9	18	15.7121
hhhhhbb!!	chr16:88561624-88561848(+)$1	224	85	94	16.0151
hhhhhheee	chr16:88829166-88829423(-)$1	257	87	96	15.4848
IIIIIIIII	chr20:62295666-62295917(+)$1	251	89	98	15.6363
na]dddd]c	chr19:2130760-2131025(-)$1	265	159	168	15.4848
=======[b	chr20:62515812-62516058(+)$1	246	188	197	15.6363
dda]eeeee	chr20:362260-362559(+)$1	299	78	87	15.6363
eeeeemmmm	chr17:79965286-79965530(+)$1	244	50	59	15.6363
HHHLLLCCC	chr16:85676256-85676500(+)$1	244	88	97	16.6969
fff]eeeee	chr19:1411145-1411377(+)$1	232	146	155	15.8636
=========	chr1:1242927-1243187(-)$1	260	108	117	16.3181
fffff22==	chr7:2677890-2678209(+)$1	319	98	107	14.5757
eeeee:JJJ	chr17:79964418-79964690(+)$1	272	116	125	15.7121
ccc]eeeee	chr17:79966618-79966881(+)$1	263	100	109	16.3181
eeee:EEEE	chr20:62582876-62583112(-)$1	236	166	175	16.0151
a[cccoooo	chr4:128982886-128983131(+)$1	245	168	177	15.8636
$$$$fffff	chr9:139716418-139716762(+)$1	344	110	119	15.4848

#DB
((.((...(	chr19:662837-663079(-)$1	1	99	108	16.3181
....((((.	chr20:61273830-61274050(+)$1	1	164	173	16.0151
(.(((.((.	chr20:61584527-61584798(+)$1	1	130	139	19.3484
((((.((((	chr14:105248278-105248531(-)$1	1	4	13	14.4999
(((((((.(	chr12:133370545-133370808(-)$1	1	38	47	15.0303
).))..)))	chr11:845847-846128(+)$1	1	131	140	15.1060
).))).(((	chr20:62514378-62514678(+)$1	1	56	65	15.2575
(((((((((	chr14:105905916-105906168(+)$1	1	94	103	16.3181
(((((.(((	chr16:70712880-70713118(-)$1	1	126	135	15.6363
))))))(((	chr12:66219268-66219536(+)$1	1	133	142	16.1666
((((.(.((	chr9:136799988-136800246(-)$1	1	119	128	19.8787
))))))(((	chr16:89969350-89969601(+)$1	1	169	178	15.7121
)))))))))	chr1:1155431-1155658(-)$1	1	93	102	15.4848
(.(((((((	chr16:22338658-22338909(+)$1	1	200	209	16.3181
((((((.((	chr2:241566171-241566431(+)$1	1	34	43	15.1060
)))))).((	chr16:88562989-88563230(+)$1	1	91	100	15.1060
(((((..((	chr17:80189283-80189517(+)$1	1	23	32	16.0151
.)))))(((	chr14:105339813-105340039(+)$1	1	67	76	15.5606
(((((..((	chr11:637269-637528(+)$1	1	118	127	16.1666
))))))).)	chr9:138981379-138981627(-)$1	1	92	101	19.8787
((((..(((	chr16:15237964-15238231(-)$1	1	144	153	14.1969
)))).))))	chr20:17662326-17662601(-)$1	1	86	95	16.1666
((.(((..(	chr17:79966084-79966334(+)$1	1	11	20	15.6363
)).))).))	chr19:1168736-1168979(-)$1	1	91	100	15.8636
(((((((.(	chr19:1409681-1409930(+)$1	1	175	184	15.4848
(((((((((	chr22:50870934-50871159(+)$1	1	19	28	14.6515
.)).)).).	chr7:1578021-1578257(+)$1	1	112	121	15.7121
))))..)))	chr4:1240031-1240284(-)$1	1	65	74	16.0151
)))))))))	chr14:105892993-105893237(+)$1	1	220	229	15.8636
..))))..)	chr20:61587059-61587303(+)$1	1	31	40	15.4090
))))..(((	chr16:87888142-87888396(-)$1	1	150	159	14.1969
)))))...(	chr11:1594227-1594504(+)$1	1	89	98	15.3333
((.((((..	chr4:1237201-1237460(-)$1	1	184	193	15.8636
(((((((((	chr17:80188973-80189204(+)$1	1	49	58	16.8484
(((.((((.	chr1:46767578-46767879(-)$1	1	146	155	14.7272
)))).))))	chr17:79064280-79064546(+)$1	1	217	226	17.9090
..)))))))	chr8:144596670-144596915(-)$1	1	38	47	15.2575
)))))))).	chr1:46767392-46767645(-)$1	1	74	83	16.1666
...))))))	chr2:47402946-47403229(-)$1	1	113	122	14.7272
))).)).))	chr7:97912754-97913010(+)$1	1	153	162	14.6515
(((((((((	chr10:102758853-102759120(+)$1	1	45	54	15.7121
.........	chr16:85647223-85647467(+)$1	1	40	49	17.6818
(((((((((	chr16:85671439-85671716(+)$1	1	87	96	16.5454
.(((.((((	chr20:60934947-60935203(-)$1	1	39	48	16.3181
((((((((.	chr3:171758046-171758319(+)$1	1	35	44	16.0151
(((((((.(	chr19:35491138-35491399(+)$1	1	99	108	15.1818
((((((.((	chr17:79963149-79963407(+)$1	1	25	34	15.0303
)))))))))	chr19:4061903-4062174(-)$1	1	101	110	17.9090
))))..(((	chr17:75485545-75485818(+)$1	1	187	196	15.0303
....)))))	chr11:853880-854123(+)$1	1	9	18	15.7121
(((((((..	chr16:88561624-88561848(+)$1	1	85	94	16.0151
)))))))))	chr16:88829166-88829423(-)$1	1	87	96	15.4848
(((((((((	chr20:62295666-62295917(+)$1	1	89	98	15.6363
.).)))).)	chr19:2130760-2131025(-)$1	1	159	168	15.4848
(((((((.(	chr20:62515812-62516058(+)$1	1	188	197	15.6363
))).)))))	chr20:362260-362559(+)$1	1	78	87	15.6363
(((((....	chr17:79965286-79965530(+)$1	1	50	59	15.6363
(((...(((	chr16:85676256-85676500(+)$1	1	88	97	16.6969
))).)))))	chr19:1411145-1411377(+)$1	1	146	155	15.8636
(((((((((	chr1:1242927-1243187(-)$1	1	108	117	16.3181
)))))..))	chr7:2677890-2678209(+)$1	1	98	107	14.5757
))))).)))	chr17:79964418-79964690(+)$1	1	116	125	15.7121
))).)))))	chr17:79966618-79966881(+)$1	1	100	109	16.3181
)))).))))	chr20:62582876-62583112(-)$1	1	166	175	16.0151
(.(((....	chr4:128982886-128983131(+)$1	1	168	177	15.8636
....(((((	chr9:139716418-139716762(+)$1	1	110	119	15.4848

#PSSM
G : 0.90	g : 0.04	U : 0.03	C : 0.01	
G : 0.83	C : 0.04	g : 0.04	A : 0.04	U : 0.03	
G : 0.86	U : 0.07	g : 0.03	A : 0.01	u : 0.01	
G : 0.86	C : 0.06	g : 0.04	A : 0.03	
C : 0.45	U : 0.37	G : 0.09	A : 0.04	c : 0.03	
U : 0.71	G : 0.10	C : 0.09	A : 0.06	g : 0.01	u : 0.01	
G : 0.87	U : 0.04	C : 0.03	g : 0.03	A : 0.01	
G : 0.95	g : 0.03	A : 0.01	
G : 0.80	C : 0.09	A : 0.06	g : 0.03	U : 0.01	

#score	1049.121212121211
#seq	66
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_UTR_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
:ffffff!!a[hhhhhhhhbb[ccc[ccceeeeemmmmeeeee]cccccc]bb]hhhhhhhhaffffff:eeeee####cccffffff!!bboooooobb22ffffff22ccc]eeeeeDDDD{FFFFFF{BBMMMMDDDD::::::ccc[dddd[bbmmmmbb22dddd]ccc::::iiiiiiiiirrrrrrrrriiiiiiiiiDDDD~~~~BB}FFFFFF}DD	chr9:116999867-117000095(+)$1	228	1	226	675.0000

#DB
.((((((..(.((((((((((.(((.((((((((....))))).)))))).)).))))))))))))))).(((((....(((((((((..((......))..))))))..))).)))))((((.((((((.((....((((......(((.((((.((....))..)))).)))....(((((((((.........)))))))))))))....)).)))))).))	chr9:116999867-117000095(+)$1	1	1	226	675.0000

#PSSM
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	

#score	675.0
#seq	1
#width	225
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_UTR_m3_run1.nuc.txt

#NT
GCGGGGCGG	chr21:46644292-46644601(+)$1	309	159	168	20.2051
gcggagcgg	chr5:171710612-171710980(-)$1	368	196	205	22.3846
CCGGAGCGG	chr19:17356440-17356738(-)$1	298	162	171	18.5384
GCGGAGCGC	chr7:2883609-2883945(-)$1	336	243	252	18.6666
GCGGAGCAG	chr17:48823044-48823465(+)$1	421	311	320	18.1538
gcggcgcgg	chr16:70719674-70719918(-)$1	244	76	85	19.9487
ccggagcgg	chr19:1941104-1941385(+)$1	281	95	104	18.5384
gccgagcgg	chr19:18392268-18392526(-)$1	258	151	160	17.8974
GCGGAGCGA	chr9:136242772-136243050(-)$1	278	95	104	18.4102
GCGGCGCGG	chr17:16945976-16946284(+)$1	308	92	101	19.9487
GCGGACCGG	chr2:11484261-11484599(-)$1	338	58	67	17.6410
ccggagcgg	chr22:41488169-41488470(+)$1	301	76	85	18.5384
GCGGAGCCC	chr1:169075586-169075865(+)$1	279	136	145	14.3076
GCGGAGCGG	chr17:80186815-80187083(+)$1	268	90	99	22.3846
GCCGAGCGG	chr6:43738518-43738783(+)$1	265	149	158	17.8974
GCggcgcgg	chr19:1941219-1941511(+)$1	292	49	58	19.9487
gcggggcgg	chr16:75032856-75033164(+)$1	308	114	123	20.2051
GCGAAGCGG	chr19:15491050-15491342(-)$1	292	186	195	17.7692
gcggagcgg	chr20:25371096-25371506(-)$1	410	370	379	22.3846
gcggggcgg	chr16:9185511-9185829(+)$1	318	215	224	20.2051
GCGGGGCGG	chr2:75061566-75061824(+)$1	258	218	227	20.2051
GCGGAGCGG	chr11:120081631-120081925(+)$1	294	241	250	22.3846
GCGGAGGGG	chrX:152913282-152913587(+)$1	305	286	295	17.8974
GCGGCGCGG	chr20:278121-278416(+)$1	295	119	128	19.9487
gcgcagcgg	chr12:133067023-133067339(+)$1	316	169	178	17.7692
GCGGGGCGG	chr12:131356993-131357253(+)$1	260	193	202	20.2051
GCGGAGCAG	chr9:6645419-6645724(-)$1	305	2	11	18.1538
GCGGGGCGG	chr14:91976136-91976386(-)$1	250	99	108	20.2051
CCGGAGCGG	chr4:1795044-1795288(+)$1	244	101	110	18.5384
gcggcgcgg	chr16:87902809-87903179(-)$1	370	45	54	19.9487
gcggcgcgg	chr22:29279647-29279951(+)$1	304	260	269	19.9487
gcggagcgg	chr6:163835949-163836179(+)$1	230	160	169	22.3846
UCGGAGCGG	chr14:31676409-31676703(-)$1	294	79	88	18.1538
GCGGGGCGG	chr16:88851342-88851698(-)$1	356	176	185	20.2051
GCGGAGCGA	chr6:117996575-117996882(+)$1	307	159	168	18.4102
GCGGAGCUC	chr12:110719325-110719614(+)$1	289	57	66	14.3076
gcggagggg	chr6:170123811-170124179(-)$1	368	23	32	17.8974
gcggggcgg	chr20:306279-306508(+)$1	229	183	192	20.2051

#otherMatches

#Struct PSSM
GGGGGGGYY	chr22:41488333-41488591(+)$1	258	131	140	18.6666
eeeennnnn	chr21:46644292-46644601(+)$1	309	159	168	20.2051
bboooooob	chr5:171710612-171710980(-)$1	368	196	205	22.3846
ccclllccc	chr19:17356440-17356738(-)$1	298	162	171	18.5384
eeee[dddd	chr7:2883609-2883945(-)$1	336	243	252	18.6666
ccccc[ccc	chr17:48823044-48823465(+)$1	421	311	320	18.1538
hhhhhhhh3	chr16:70719674-70719918(-)$1	244	76	85	19.9487
:ccc[eeee	chr19:1941104-1941385(+)$1	281	95	104	18.5384
ccc::::::	chr19:18392268-18392526(-)$1	258	151	160	17.8974
cclllccc]	chr9:136242772-136243050(-)$1	278	95	104	18.4102
ffffffddd	chr17:16945976-16946284(+)$1	308	92	101	19.9487
eeeccc[gg	chr2:11484261-11484599(-)$1	338	58	67	17.6410
ffff[iiii	chr22:41488169-41488470(+)$1	301	76	85	18.5384
bbbb]gggg	chr1:169075586-169075865(+)$1	279	136	145	14.3076
eee::::::	chr17:80186815-80187083(+)$1	268	90	99	22.3846
:ffffff!!	chr6:43738518-43738783(+)$1	265	149	158	17.8974
eee]bb]bb	chr19:1941219-1941511(+)$1	292	49	58	19.9487
eeeeegggg	chr16:75032856-75033164(+)$1	308	114	123	20.2051
DDDKKEEEE	chr19:15491050-15491342(-)$1	292	186	195	17.7692
]ccc]dddd	chr20:25371096-25371506(-)$1	410	370	379	22.3846
{CCCIIIII	chr16:9185511-9185829(+)$1	318	215	224	20.2051
ccDDDD}BB	chr2:75061566-75061824(+)$1	258	218	227	20.2051
ggggggddd	chr11:120081631-120081925(+)$1	294	241	250	22.3846
D}BBYYCCC	chrX:152913282-152913587(+)$1	305	286	295	17.8974
eeeee]fff	chr20:278121-278416(+)$1	295	119	128	19.9487
DDDDYYDDD	chr12:133067023-133067339(+)$1	316	169	178	17.7692
ggggfffff	chr12:131356993-131357253(+)$1	260	193	202	20.2051
:DDDD{EEE	chr9:6645419-6645724(-)$1	305	2	11	18.1538
ff::cccnn	chr14:91976136-91976386(-)$1	250	99	108	20.2051
cc]a:bb[f	chr4:1795044-1795288(+)$1	244	101	110	18.5384
eeeeeccc!	chr16:87902809-87903179(-)$1	370	45	54	19.9487
=========	chr22:29279647-29279951(+)$1	304	260	269	19.9487
fappppppp	chr6:163835949-163836179(+)$1	230	160	169	22.3846
2ffffffff	chr14:31676409-31676703(-)$1	294	79	88	18.1538
DA{FFFFFF	chr16:88851342-88851698(-)$1	356	176	185	20.2051
eeee[bbmm	chr6:117996575-117996882(+)$1	307	159	168	18.4102
ccc!!cccl	chr12:110719325-110719614(+)$1	289	57	66	14.3076
ee####iii	chr6:170123811-170124179(-)$1	368	23	32	17.8974
ddddggggg	chr20:306279-306508(+)$1	229	183	192	20.2051

#DB
)))))))..	chr22:41488333-41488591(+)$1	1	131	140	18.6666
((((.....	chr21:46644292-46644601(+)$1	1	159	168	20.2051
((......)	chr5:171710612-171710980(-)$1	1	196	205	22.3846
(((...)))	chr19:17356440-17356738(-)$1	1	162	171	18.5384
((((.((((	chr7:2883609-2883945(-)$1	1	243	252	18.6666
(((((.(((	chr17:48823044-48823465(+)$1	1	311	320	18.1538
)))))))).	chr16:70719674-70719918(-)$1	1	76	85	19.9487
.(((.((((	chr19:1941104-1941385(+)$1	1	95	104	18.5384
)))......	chr19:18392268-18392526(-)$1	1	151	160	17.8974
((...))).	chr9:136242772-136243050(-)$1	1	95	104	18.4102
(((((((((	chr17:16945976-16946284(+)$1	1	92	101	19.9487
)))(((.((	chr2:11484261-11484599(-)$1	1	58	67	17.6410
((((.((((	chr22:41488169-41488470(+)$1	1	76	85	18.5384
)))).))))	chr1:169075586-169075865(+)$1	1	136	145	14.3076
)))......	chr17:80186815-80187083(+)$1	1	90	99	22.3846
.((((((..	chr6:43738518-43738783(+)$1	1	149	158	17.8974
))).)).))	chr19:1941219-1941511(+)$1	1	49	58	19.9487
(((((((((	chr16:75032856-75033164(+)$1	1	114	123	20.2051
(((..((((	chr19:15491050-15491342(-)$1	1	186	195	17.7692
.))).))))	chr20:25371096-25371506(-)$1	1	370	379	22.3846
.((((((((	chr16:9185511-9185829(+)$1	1	215	224	20.2051
)))))).))	chr2:75061566-75061824(+)$1	1	218	227	20.2051
)))))))))	chr11:120081631-120081925(+)$1	1	241	250	22.3846
).))..)))	chrX:152913282-152913587(+)$1	1	286	295	17.8974
))))).)))	chr20:278121-278416(+)$1	1	119	128	19.9487
))))..)))	chr12:133067023-133067339(+)$1	1	169	178	17.7692
)))))))))	chr12:131356993-131357253(+)$1	1	193	202	20.2051
.((((.(((	chr9:6645419-6645724(-)$1	1	2	11	18.1538
))..(((..	chr14:91976136-91976386(-)$1	1	99	108	20.2051
)).).((.(	chr4:1795044-1795288(+)$1	1	101	110	18.5384
((((((((.	chr16:87902809-87903179(-)$1	1	45	54	19.9487
)))))))))	chr22:29279647-29279951(+)$1	1	260	269	19.9487
((.......	chr6:163835949-163836179(+)$1	1	160	169	22.3846
.))))))((	chr14:31676409-31676703(-)$1	1	79	88	18.1538
((.((((((	chr16:88851342-88851698(-)$1	1	176	185	20.2051
((((.((..	chr6:117996575-117996882(+)$1	1	159	168	18.4102
(((..(((.	chr12:110719325-110719614(+)$1	1	57	66	14.3076
((....(((	chr6:170123811-170124179(-)$1	1	23	32	17.8974
(((((((((	chr20:306279-306508(+)$1	1	183	192	20.2051

#PSSM
G : 0.53	g : 0.33	C : 0.05	c : 0.05	U : 0.02	
C : 0.61	c : 0.38	
G : 0.56	g : 0.38	c : 0.02	C : 0.02	
G : 0.56	g : 0.38	A : 0.02	c : 0.02	
A : 0.41	a : 0.23	G : 0.12	c : 0.10	g : 0.07	C : 0.05	
G : 0.56	g : 0.41	C : 0.02	
C : 0.56	c : 0.38	G : 0.02	g : 0.02	
G : 0.48	g : 0.41	A : 0.05	C : 0.02	U : 0.02	
G : 0.46	g : 0.38	C : 0.07	A : 0.05	c : 0.02	

#score	749.4102564102568
#seq	39
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF832JDM_UTP3_transcript_m2_run2.nuc.txt

#NT
gcagccggcgaggggcgggcgcgccgggacggagcugagcCGCGAUGGAAUUAGCCCCGCGGCGGCAUAAGCCUGCCCAGAAgcgcgcggccgcgggccggcggggUCUGCGUCCACAUCAUGGCGACUCCCGGGCCGCGCGGUGAGUUU	chr12:6054295-6054503(-)$1	208	0	150	247.5000
gcagccggcgaggggcgggcgcgccgggacggagcugagcCGCGAUGGAAUUAGCCCCGCGGCGGCAUAAGCCUGCCCAGAAgcgcgcggccgcgggccggcggggUCUGCGUCCACAUCAUGGCGACUCCCGGGCCGCGCGGUGAGUUU	chr12:6054303-6054521(-)$1	218	18	168	247.5000
GCCACUACCGCGAGGAGCCCGCGCUGGGCCCGGCCAAAgccgcccgccaggccgcccgggacggggcgcggcuggcgcuggcccgcgcggcacccgagugcugcgcgcccccgacccccgaggccccgggcgcgccggcgcAGCUGCCCU	chr21:38119982-38120192(+)$1	210	46	196	247.5000

#otherMatches

#Struct PSSM
FFF::::::ccc[bblllbb]ccceeeee!!cccmmmmccceeeee:::FFFFFFAEEEEEAHHHHHHHHHHHHHHHHKKDDDDiiiiiiiiimmmmiiiiiiiiiccc!!bbnnnnnbb]ccc:::DDDDHHHHHHHHeeeeessssss	chr21:38119992-38120204(+)$1	212	36	186	247.5000
:GGGGGGG::::hhhhhhhh!!dddd"""ccc[eeeee[bbnnnnnbb22eeeee]ccc333dddd4444hhhhhhhh:eeeee$$$$$ffffffdddd[a[ffffff[bbuuuuuuuuuuuubbffffffa]dddd]ffffff22eeee	chr12:6054295-6054503(-)$1	208	0	150	247.5000
###ffffff!!a[ccc!!ffffff[ccc[ccc[ccc!!eeeee!!cccqqqqqqqqccc22eeeee333ccccccccc4444ffffff]ccc]a22ffffff333dddd]a]ccc]a]dddd::::::::eeeeebbbb[cccqqqqqqq	chr12:6054303-6054521(-)$1	218	18	168	247.5000
doooooodddd:::EEEEE}CCC::dddd!!cccmmmmcccddddCCC{CCCHHHHHHHH{EEEEEKKCCC::cccmmmmccc==========mmmm==========:::CCCYYEEEEE~~~~HHHHHHHH}CCCCCCeeeeessssss	chr21:38119982-38120192(+)$1	210	46	196	247.5000

#DB
(((......(((.((...)).)))(((((..(((....))))))))...)))))))))))))))))))))((((((((..(((((((((((((....)))))))))(((..((.....)).)))...))))))))))))(((((......	chr21:38119992-38120204(+)$1	1	36	186	247.5000
.(((((((....((((((((..((((...(((.(((((.((.....))..))))).)))...))))....)))))))).(((((.....((((((((((.(.((((((.((............))))))))).)))).))))))..))))	chr12:6054295-6054503(-)$1	1	0	150	247.5000
...((((((..(.(((..((((((.(((.(((.(((..(((((..(((........)))..)))))...)))))))))....)))))).))).)..))))))...)))).).))).).))))........(((((((((.(((.......	chr12:6054303-6054521(-)$1	1	18	168	247.5000
(......))))...))))).)))..((((..(((....)))))))(((.(((((((((((.(((((..(((..(((....)))((((((((((....))))))))))...)))..)))))....)))))))).))))))(((((......	chr21:38119982-38120192(+)$1	1	46	196	247.5000

#PSSM
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	a : 0.50	
A : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
A : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	a : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	u : 0.50	
A : 0.50	g : 0.50	
A : 0.50	a : 0.50	
g : 1.00	
c : 1.00	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
c : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
c : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	A : 0.50	
g : 0.50	U : 0.50	
c : 0.50	U : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	A : 0.50	
g : 0.50	U : 0.50	
c : 0.50	A : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
u : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	A : 0.50	
c : 0.50	g : 0.50	
c : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
a : 0.50	c : 0.50	
c : 0.50	g : 0.50	
c : 1.00	
c : 0.50	g : 0.50	
g : 1.00	
a : 0.50	g : 0.50	
g : 0.50	c : 0.50	
u : 0.50	c : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
u : 0.50	c : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
g : 0.50	U : 0.50	
c : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	C : 0.50	
c : 0.50	C : 0.50	
c : 0.50	A : 0.50	
c : 0.50	C : 0.50	
c : 0.50	A : 0.50	
c : 0.50	U : 0.50	
g : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
c : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	

#score	990.0
#seq	4
#width	150
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_transcript_m1_run1.nuc.txt

#NT
uuuuuuuuuuuuuuuuuuuuuuuuuugaggcagagucucguucuguugcccaggcuggagugcaguggcgcaaucucagcucacugcauccucugccucccggguucaagcgauucuccugccucagcca	chr2:168770826-168771070(-)$1	244	80	210	268.0327
uuugugugcuuuuuuuuuuuuuuuuugagacggaaucuugcucugucacccaggcuggagugcaguggccugguaucggcucagugcaacuuuugccucccggguucaagcgauuauccugccucagccu	chr17:29222346-29222618(+)$1	272	68	198	239.8360
UAuuuuucuuucuuuuuuuuuuuuuuugagaugagucucacugugucucccaagcuggagugcaguggugccaucucggcucacugcaaccuccgccucccagguucaagcgauucuccugccucagccu	chr12:57033444-57033659(-)$1	215	79	209	249.5901
uucuaacuuauuuuuguuuuuguuuuuugagacaacaucccucugucacccaggcuggaguucaguggcucgauuuuggcuaaccguaaccucugccuccugaguucaagcaauucuccugccucagccu	chr7:75054069-75054351(-)$1	282	83	213	204.0163
CCCuuuuuuuuuuuuuuuuuuuuuuugcagcagagucucgcucuguagcccaggcuggagugcaguggcgcauugucgccucacugcaaccuccgccucccggguucaagcaauucuccugccucagccu	chr16:89447601-89447847(-)$1	246	82	212	252.6229
uuuuuuuuuuuuuuuuuuuuuuuuuugaggcagagucuuacucugucuugcaggcugguguagaguggcgagaucuuggcucacugcaauuuccaccuccuggguucaagugauucuccuugccuuagac	chr7:2407398-2407671(+)$1	273	70	200	205.4098
uucuucuuuuuuuuuuuuuuuuuuuuugagauggagucuugcuuugucgccgggguagaaugcaguggcaugaucucagcucacugcaaccucugccucccagguucaagcaauucuccugccucagccu	chrX:24092894-24093146(+)$1	252	79	209	195.0819
uuguuuuuuuguuuugcuuuuuuuuugugacagggucucacucugucucccgagcuggaguacaguggcgcagucuuggcccacugcagccuccaccucccagguucaauugauccucccaccucagccu	chrX:131194555-131194842(+)$1	287	80	210	220.9836
CUCCAucuuuuuuuuuuuuuuuuuuuaagacagagucuugcucugucacccagguuggagugcaguggcuugaucucggcucacugcagccucugccuuccagguucaagugauucucaugccucauccu	chr19:13053351-13053564(+)$1	213	49	179	241.4754
guuuuguuuuguuuuuuuuuaauuuugcgacggaguuucgcucugucgcccaggcuggaguguaguggcgagaucuugggucacuggaugcucagccuccuggguucacaccauucuucugccucagccu	chr2:61743118-61743368(-)$1	250	82	212	219.5901
uucuuuuuuuuuuuucuucuuuuuuuagacggagucuugcucuugucacccaggcugaaguguaguggcaugaucucagcucacugcaaccucugccuccuggguucaagugauucuccugccucagcau	chr7:119379619-119379870(-)$1	251	80	210	211.3114
uuuggaaauuuuuuuguuuuucuuuugagacagagucucgcuguguuacccaggauggagugcaguggcacgaucucggcuuacugcaaccucugccucuuggguucaaccauuucucaugcuucagccu	chr6:86329806-86330079(-)$1	273	90	220	221.6393
uuuuuuuuuuuuuuuuuuuuuuucuggagacagagucuggcucugucacccaggcuggagugcaguggcucgauuucggcucacugcaaacuccaccucccagguucaugccauucuccugccucagccu	chr4:1726026-1726261(+)$1	235	83	213	258.2786
Cuuuuuuuuuuuuuuuuuuuuuuuuggagucagguucuugcucuguugcccaggcuggacuguaguggcgugaucuugccucacugcagccucugccucccggguucaagcgaucuuccugccucagccu	chr14:103085729-103085986(+)$1	257	80	210	243.1967
Uuuuuauuuuauuuuauuuuauuuuugagacagagucucgcucugucggccaggcuagaguguaguggcgugaucucagcuuacugcaagcuccgcuucccggguucacgccauucugcugccucagcuu	chr1:29387703-29387954(+)$1	251	70	200	230.1639
gauacuuuuuuuuuuuuuuuuuuuuugagauggagucucgcacugucauccaggcuggagggcaguggugcaaucucugcucacugcuaccucugccucccggaugcaagugauucuccugccucagccu	chr9:95051361-95051595(-)$1	234	81	211	239.3442
AUCUGAUAAAUUGuuuuuuuguuuuugagacggagucucacucuaucaccugggcugaaguacaguggugcaaucucggcucacugcaaccuccagcucccgggugccagugauucuccugccucagccu	chr2:175956438-175956716(-)$1	278	100	230	214.8360
uuuuuuuuuuuuuuuuucuuuuuuuggagacagggccucacucuguuucccaggcuggaaugcagugcugcaaucgcuauucacugcagccucgaccucccaggcuuaggugauccucccaccucagccu	chr10:3163922-3164221(+)$1	299	83	213	210.1639
UUGAuuuuuuuuuuuuuuuuuuuccgagacggaguuucgcucuugugacccaggcuggagugcaauggcgcgaucucggcucacugcauccuccacgccccggacucaagcgauucuccugccucagccu	chr7:151214316-151214547(-)$1	231	68	198	197.9508
uuuuuuuuuuuuuuuuuuuuuuuuuugagacagggugucacucuguugccugugcuggagugcaguggugugaguauagcucucugcagccuugaauuccugggcucaagcaauccucccaccucauccu	chr7:75095009-75095267(-)$1	258	81	211	202.3770
uuuguuuuguuuuguuuuguuuuuuugagacagagucuuacuugguugcccaggaugaagugcaauggagcgaucucggcucacugcaaccucugccuccuggguucaagcaauucuccugucucagccu	chrX:73808166-73808453(-)$1	287	122	252	237.4590
uuuuuuuuuuuuuuuuuuuuuuuuggagacagagucuuaacucugucgcccaggcuggagugcaguagcgcagucucggcucacugcaaccucugccaccuggguucaagugauucuccugccucagccc	chr7:104700349-104700602(+)$1	253	85	215	224.7540
uguucuuguuuuuguuuuguuuuuuugagacaaagucucccucugacacccaggcuggggugcaauggcgugaucucaccucacugcaaccucugccucccagguucaagcaauuauugggccucagcca	chr7:120688517-120688735(+)$1	218	68	198	223.7704
aguuuuuuuuuuuuuuucuuuuuuugagucgagggucucacucuguugcccaggcuggagugcaguggcuugaucauggcucaaugcaaccuugaacuccugagcccaagcaauccuccugccucugccu	chr7:117825223-117825493(+)$1	270	82	212	206.1475
uauuuaauaauuuuuuuuuuuuuuuuuagacagagucuugcucugucggccaggcuggagugcaguggugcaaucuuggcucacugcaaccuccgucucccuggcucaagcgauucuccugccucagcuu	chr19:29024929-29025164(-)$1	235	66	196	244.1803
uuuuuuuuuuuuuuuuuuuuuuuuuugagauggagucucgcuuugucacccaggcuggagugcaguggcgccaucccagcucacugcaagcuccgccucccggguucaugccauucuccugccucagccu	chr3:195787516-195787774(-)$1	258	80	210	263.0327
uuuuuuuuuuuuuuuuuuuuuuucuugagacggagucuuacucugucaugcaggcuggagugcaguggugcaaucuuggcucacugcaaccucugccucccagguucaagugauucuugugccucagccu	chr1:1330019-1330237(-)$1	218	82	212	257.2131
uuuuucuuuucuuuuuuuuuuuuuuuuuugagacggagucucuugucacccuggcuggagugcaguggcgugaucucagcucacugcaaccuccgccucccagguucaagugaugcuccugccucagccu	chr3:195795652-195795894(-)$1	242	67	197	224.8360
UCACCGCuuuuuuuuuuuuuuuuucugagacagagccuugcucugucacccaggcuggagugcaguggcgccaucucggcucaccgcaaccuccgccucccagguucaagcgguucuucugacucagccu	chr15:89443330-89443579(-)$1	249	81	211	241.3934
guuuuuuuuuuuuuuuuuuuuuuuuuugaggcgggucucacaguguuacccaggcuggagugcaguggcucaaucacugcuuacugcacucucagccuccugggcucaagcaauccucccaucucaaucu	chr1:29388002-29388258(+)$1	256	81	211	204.6721
uuuuguuguuguuguuuuuuauuuuugagacagggucuugccuugucacccaggcuggagugcaauggccagaucuuggcucacugcaaccucugccucuugaguucaaacgauucuccugccucagccu	chr8:130515801-130516085(-)$1	284	116	246	234.9180
AGGCUGuuuuuuuuuuuuuuuuuuuuaagacagugucuugcacugucaccugggcuggagugcaguggcgcagucucggcucacugcaaccuccaccuccuggguucaagcgauucuccugccucagccu	chr17:56073707-56073912(-)$1	205	42	172	249.5081
uuuuucuuuuuucuuuuuuuuuuuucaagacagggucucgcucuuuugcccaggauggaguacaguggcauggucaaggcucacugcagcuucaaucuucugggcucaaguaauccuuccaccucagccu	chr2:173461747-173461993(+)$1	246	79	209	201.3934
uuuguuuuguuuuuguuuuuguuuuugagacggguucucacucugucaccuaggcuggacugcacuggcgugaucucggcucacugcaagcuccgccuccuggguucacgccauucucccgcuucagccu	chr3:10086760-10087017(+)$1	257	84	214	233.6065
CCUUAuuuuuuuuuuuuuuuuuuuuggagacagaggcuuacucucuugccuaggcuagagugcaguggcaccauguuggcucacugcaaccucagccucccagguuuaagcgauucucugccuuagccuc	chr3:195801758-195802025(-)$1	267	83	213	201.3934
UUUUAGAGAUCuuuuuuuuuuuucuugagacauggacuugaucugucacccaggcuggagugcgguggcacgaucuuggcucacugcagccuugaucucccaggcucaagcgauuuucccacuucagccu	chr15:85637001-85637275(+)$1	274	81	211	205.3278
GCAAuuucuuuuuuuuuuuuuuuuuugagacagagucuagcucugucgcccaggcuggggugcaguggagugaucucggcucacugcaacuuccgccucccagguuuaagcgauucuccugccucagccu	chr1:6582805-6583048(-)$1	243	79	209	252.7049
gauacuuuuuuuuuuuuuuuuuuuuugagauggagucucgcacugucauccaggcuggagggcaguggugcaaucucugcucacugcuaccucugccucccggaugcaagugauucuccugccucagccu	chr9:95051319-95051561(-)$1	242	47	177	239.3442
GCuuugcuuuuuuuuuauuauuuuuugaaacagagucucacucuguugcccaggcuggaaugcaguggccugaucuuggcucacugcacccuccaccucccauguuuaaacaacuguuaugccucagccu	chr7:140161236-140161540(-)$1	304	80	210	214.8360
AGGUCACuuuuuuuuuguuuuuguuugagacagugucucacucugucgcccaggcuggaguguaguggcccgaucucggcucacugcaaccuccuccucccggguucaagcgauucuucugccucagccu	chr22:22142140-22142389(-)$1	249	89	219	244.8360
AGGCUGuuuuuuuuuuuuuuuuuuuuaagacagugucuugcacugucaccugggcuggagugcaguggcgcagucucggcucacugcaaccuccaccuccuggguucaagcgauucuccugccucagccu	chr17:56073712-56073938(-)$1	226	68	198	249.5081
uucuuuuuuucuuuuuuuuuuuuuuugaaauggagucuugcugugucacccagacuggaguacgguggugccauuucggcucacugcaacuuccaccucccagguucaagugauucuccugccccagagc	chr11:66389615-66389881(+)$1	266	79	209	225.4098
UUUCAAGCCuuuuuuuuuuuuuuuuugagacagaguuucacucuuguucccuggcuggagugcaauggcacagucucggcucacugcaaccuccaccucccggguucaagugauccucuugccucagccu	chr14:102231827-102232080(+)$1	253	69	199	227.9508
uuuuucuuuucuuuuuuuuuuuuuuuuuugagacggagucucuugucacccuggcuggagugcaguggcgugaucucagcucacugcaaccuccgccucccagguucaagugaugcuccugccucagccu	chr3:195795694-195795904(-)$1	210	77	207	224.8360
uauuuuuuuuauuauuuuuuuuuuggggacggagugucccucuuguugcccaggcuggagugcaauggcgugaucuuggcucacugcagccuucgccucccggguucaagugauucuccugccucagccu	chr3:113528817-113529043(+)$1	226	64	194	211.4754
UUAuuuuuacuuuuuuuuuuuuuuuuuugagacagggucucacugucacccagccuggagugcaauggcacgaucuuggcucacugaaaccuccaccucccaggcccaagugaucauccuaccucagccc	chr3:138402001-138402284(-)$1	283	63	193	211.3934
cuuuuuuuguuuuuguuuuuguuuuugauacggagucuugcucuguugccuaggcuggagugugguggucuggucucaguucacuacaacuucugccuccgaggcucaagcgauucuccugccucagcca	chr16:259029-259287(-)$1	258	79	209	216.5573
uguucuuguuuuuguuuuguuuuuuugagacaaagucucccucugacacccaggcuggggugcaauggcgugaucucaccucacugcaaccucugccucccagguucaagcaauuauugggccucagcca	chr7:120688535-120688767(+)$1	232	50	180	223.7704
UAuuuuucuuucuuuuuuuuuuuuuuugagaugagucucacugugucucccaagcuggagugcaguggugccaucucggcucacugcaaccuccgccucccagguucaagcgauucuccugccucagccu	chr12:57033406-57033623(-)$1	217	43	173	249.5901
uuguuuuuuuuuguuuuuuuuuuuuugaggugaagucucgcucugacacccaggcuggcgugcaguggugugaucucggcucacugcaaacuccgcuuccuggguucaagugguucuccugccccagccu	chr21:45179969-45180232(+)$1	263	80	210	240.7377
uggcuaauuuuuuuuuuuuuuuuuuugaguuggagucucacucuguggcucaggcuggagugcaguggcgugauuucggcucacugcaaucuccgccucccagguucaagcgauucuucugccucagccu	chr3:195801604-195801821(-)$1	217	46	176	246.8852
ucuuuuuuuuuuuuuuuuuuuuuuuugagauggagucucacucugucacccaggguggagugcaguggcacgaucucugcucacugcaccauccgccuccuggauucaagcgauucuccugcuucagccu	chr11:63458503-63458780(+)$1	277	81	211	255.9836
uaccacuuuuuuuuuuuuuuuuuuuuuuuugagauggagucucuguuucccaggcuggagugcaauggcaugaucucggcucacugcaaccuccaccuccugaguucaaacgauucuccuaccucagcuu	chr10:11926546-11926813(-)$1	267	78	208	213.5245
ACuuuuuuuuuuuuuuuuuuuuuuuuuuuugacagagucucacucucgcccuggcuggagugcaguggugccaucucagcuuacugcaaccuccgccucccggguucaagcaauucuccugccucagccu	chr20:57477701-57477951(+)$1	250	77	207	232.4590
UAuuuuucuuucuuuuuuuuuuuuuuugagaugagucucacugugucucccaagcuggagugcaguggugccaucucggcucacugcaaccuccgccucccagguucaagcgauucuccugccucagccu	chr12:57033423-57033644(-)$1	221	64	194	249.5901
uauuuuuuauuauuauuauuauuuuugagacagagucucgcucugucgcccaguguggagugcaguggugugaucuuggcucacugcaaacuccgccucccagguucaagcgauucucccaccucagccu	chr1:21070044-21070260(-)$1	216	81	211	239.6721
uuuuuuuuucuuuuuuuuuuuuuuuugagauggagucucgcacuguugccugugcuggagugcaauggcacuaucucagcucaccacaauguccgccuccuggguuuaaaugauucuccugccccagccu	chr1:22027699-22027963(-)$1	264	79	209	222.0491
uuuguauuuuuguuuuguuuuguuuugagacggagucucgcuuuguugccugagcuagagugcaauggcucgaucuuggcucacugcagccuccaccuccuggguucaagugauucuccugccucagccu	chr15:93455659-93455955(+)$1	296	96	226	233.3606
uuuuguuuguuuuguuuuguuuuuuugagacggugucucgcugcaucacccaggcuggagugcaguggcgcaaucucgccuuccugcagucuccgccuccugaguucaagcgauucuccugccucagccu	chr22:21304623-21304846(+)$1	223	70	200	231.4754
uuuuuuuuuuuuuuuuuuuuuuucuugagacggagucuuacucugucaugcaggcuggagugcaguggugcaaucuuggcucacugcaaccucugccucccagguucaagugauucuugugccucagccu	chr1:1329993-1330219(-)$1	226	64	194	257.2131

#otherMatches

#Struct PSSM
::::::::::::::::::::::::::==========lll==========ccclllccc:dddd[ccc[a============[dddd+++++++++++++++eeeee[ffffffnnnnnffffff]eeeee	chr12:94796526-94796782(-)$1	256	82	212	237.4590
::::::::::::::::::::::::iiiiiiiiibb!!eeeee[bb!!dddddddd[ddddgggggggbbrrrrrrrrrbb]ggggggg22dddddddd333dddd]bbeeeee22bb]iiiiiiiii:::	chr2:168770826-168771070(-)$1	244	80	210	268.0327
sssseeeee:::::::::JJJJJJJJJJJJ:ccc"""eeeee[bb!!dddddddd[eeeeeccc[bbcccpppppppccc]bb]ccc]eeeee]dddd333dddd]bbeeeee333ccc::::ddddmmm	chr17:29222346-29222618(+)$1	272	68	198	239.8360
%%%%%cccddddxxxxxxxxxxxxxxxdddd]ccc666666eeeee]ccc]dddd:ddddhhhhhhhh[cccnnnnnccchhhhhhhh22ddddddddllldddd:::GGGGGGGYYBB}HHHHHHHH::	chr12:57033444-57033659(-)$1	215	79	209	249.5901
qqqqdddd:::::gggggggqqqqqqqqggggggg:EEEEE{CCCOOOOOOFFFFFFhhhhhhhh[ccc&&&&&&&cccmmmmccc88888888ccc22hhhhhhhh::cccpppppppccc::FFFFFF	chr7:75054069-75054351(-)$1	282	83	213	204.0163
d:::::::::::::::::::::::::dddd[eeeee"""ccc[bb[eeeeedddd[ddddhhhhhhhh[bboooooobb]hhhhhhhh22dddddddd333eeeeebbccc]eeeee]ddddgggggggq	chr16:89447601-89447847(-)$1	246	82	212	252.6229
::::::::::::::::::::::::::==========lll==========:::GGGGGGGYYCCC:ccc[ccc[ccc[ccceeeee%%%%%%ddddnnnnndddd4444eeeee88888888ccc22cccc	chr7:2407398-2407671(+)$1	273	70	200	205.4098
:::::::::::::::::::::::::eeeee!!dddd!!ffffff[a!!ccchhhhhhhh[gggggggbb[bbmmmmbbbb]ggggggg333hhhhhhhh333ccc]affffff22dddd333eeeee:::	chrX:24092894-24093146(+)$1	252	79	209	195.0819
::::::::::::::::::::::::::::hhhhhhhhlllhhhhhhhh::::ccc[eeeee!!ffffff[bbpppppppbbffffff4444eeeee]ccc::ccc[bbmmmmbb]ccc::::::::DDDD}	chrX:131194555-131194842(+)$1	287	80	210	220.9836
++++++++++++++++++++++++++++hhhhhhhhlllhhhhhhhhbb]eeeee:bb!!gggggggcccpppppppccc]ggggggg]bb:DDDDZZZHHHHHHHH::hhhhhhhh!!ccc[bbqqqqq	chr19:13053351-13053564(+)$1	213	49	179	241.4754
::::::::::::::::::::::::::==========lll==========::ffffff[bb[ddddccc[a[bb[ffffff"""ddddmmmmdddd333ffffff]bb]a]ccc55555ddddbbffffff	chr2:61743118-61743368(-)$1	250	82	212	219.5901
d^^^^^^^^^^^^^^^^^^^^^^^^^ddddiiiiiiiii::::::::::::dddd[bb[bbffffffbb[bbmmmmbbbb]ffffff]bb]bb]dddd::ggggggg!!hhhhhhhh[dddd[ddddmmm	chr7:119379619-119379870(-)$1	251	80	210	211.3114
sssggggggg4444hhhhhhhh::::eeeeellleeeeeFFFFFF::hhhhhhhh[ddddgggggggbb[bbmmmmbbbb]ggggggg22dddd333hhhhhhhh:::::::::::::::::ffffff!!	chr6:86329806-86330079(-)$1	273	90	220	221.6393
:::::::::::::::::::GGGGGGG::hhhhhhhhlllhhhhhhhh::::ccc[ffffffffffffbb[bbmmmmbbbb]ffffff22ffffffccc::::cccmmmmccc::::::::hhhhhhhh!!	chr4:1726026-1726261(+)$1	235	83	213	258.2786
::::::::::::::::::::::::::ccc[dddd"""eeeee[bb!!dddddddd[bb[gggggggddddoooooodddd22gggggggbb333dddd333dddd]bbeeeee4444dddd]ccc::::d	chr14:103085729-103085986(+)$1	257	80	210	243.1967
gmmmmggggggg::::::::::::::::hhhhhhhhlllhhhhhhhhFFFFFF~~~~JJJJJJJJJJJ}GGGGGGGFFFFFFZZZCCC}BBZZZBB:::::ccc####dddd####bb!!a[gggggggq	chr1:29387703-29387954(+)$1	251	70	200	230.1639
]ggggggg::::::::::::::::eeeee!!dddd!!dddd!!bb[eeeeedddd[eeeeeggggggg[cccnnnnncccggggggg22eeeeedddd333eeeeebb]dddd22dddd333eeeee::e	chr9:95051361-95051595(-)$1	234	81	211	239.3442
rrrggggggg]ccc]eeeee::::::ccc[adddd!!eeeee####gggggggdddd[bb!!ffffff[bbpppppppbbffffff4444bb]dddd22ggggggg22eeeee22dddd]a]cccDDDDf	chr2:175956438-175956716(-)$1	278	100	230	214.8360
:::::::::::::::::::::::::==========nnnnn==========:eeeee$$$$$ffffff!!bbmmmmbb4444ffffffeeeee::::ccc!!eeeee[eeeeepppppppeeeee]eeeee	chr10:3163922-3164221(+)$1	299	83	213	210.1639
]eeeee:::::::::::::::::::ccc[adddd!!eeeee!!bb[a[bb!!ccceeeeedddd[bbbb[bbmmmmbbbb]bb]dddd22eeeee]ccc22bb]a]bbeeeee22dddd]a]ccc:dddd	chr7:151214316-151214547(-)$1	231	68	198	197.9508
::::::::::::::::::::::::::::hhhhhhhhlllhhhhhhhhFFFFFFEEEEE}CCCYYGGGGGGGccc[bb[ccc"""bb[eeeee[annnnna]eeeeebbccc]bb]cccccc[dddd[ggg	chr7:75095009-75095267(-)$1	258	81	211	202.3770
g:::::::::::::::::::::::::gggggggbb!!bb[eeeee!!hhhhhhhh[a[bbdddd"""ddddpppppppdddd22dddd4444bb]a]hhhhhhhheeeee]bb22bb]gggggggCCCYY	chrX:73808166-73808453(-)$1	287	122	252	237.4590
::::::::::::::::::::::::BB:hhhhhhhhmmmmhhhhhhhhggggggg[cccbbffffffcccrrrrrrrrrccc]ffffff4444bb]cccggggggg::::hhhhhhhh[dddduuuuuuuu	chr7:104700349-104700602(+)$1	253	85	215	224.7540
::::::::::iiiiiiiiiooooooiiiiiiiiicccpppppppccc::::dddd[eeeeeccc[ccc[cccmmmmccc]ccc]ccc]eeeee]dddd:::hhhhhhhhppppppphhhhhhhhdddd[b	chr7:120688517-120688735(+)$1	218	68	198	223.7704
hhhhhhh333eeeee]eeeee333ccc333eeeeeEEEEEJJJJJJJJJJJ{CCC:DDDD{DDDD{CCCKKBB::::ffffffzzzzzzzzzzzzzzzzzffffff:::cccpppppppccc:BB}CCC}	chr7:117825223-117825493(+)$1	270	82	212	206.1475
::::::::::::::::::::::::::::hhhhhhhhlllhhhhhhhhggggggg[eeeeehhhhhhhh[bbpppppppbbhhhhhhhh22eeeee4444ggggggg:::cccpppppppccc::eeeeeq	chr19:29024929-29025164(-)$1	235	66	196	244.1803
::::::::::::::::::::::::eeeee!!dddd####bb!!bb!!dddddddd[eeeeeffffffbbrrrrrrrrrbb]ffffff22eeeeedddd333dddd]bb]bb4444dddd333eeeee:::	chr3:195787516-195787774(-)$1	258	80	210	263.0327
::::::::::::::::::::::::::::hhhhhhhhlllhhhhhhhh::::dddd[ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddddddd:FFFFFF}A}DDDDZZZIIIIIIIII::::::	chr1:1330019-1330237(-)$1	218	82	212	257.2131
^^^^^^^^^^^^^^^^^^^^^^^^^^iiiiiiiiigggggggggggggg]a]iiiiiiiiiccc::CCCJJJJJJJJJJJeeeee!!eeeeerrrrrrrrreeeee22eeeee:bbmmmmbbeeeeemmm	chr3:195795652-195795894(-)$1	242	67	197	224.8360
caGGGGGGG:::::::::::::::::::hhhhhhhhlllhhhhhhhhccc[dddd[ddddccc[dddd[cccnnnnncccdddd]ccc22dddddddd4444ccc::GGGGGGG::::::::::::cccd	chr15:89443330-89443579(-)$1	249	81	211	241.3934
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeeeDDDD}DDDDBB}DDDDddddeeeee==========bbrrrrrrrrrbb]==========]eeeee333dddd:::::::::::::::::::cccoooo	chr1:29388002-29388258(+)$1	256	81	211	204.6721
qqqqeeeee:::::::::::::::::::hhhhhhhhlllhhhhhhhh::::dddd[dddddddd[bbddddnnnnndddd]bb]dddd22ddddddddFFFFFFZZZDDDDCCC::::::::gggggggq	chr8:130515801-130516085(-)$1	284	116	246	234.9180
KBB{EEEEE:::::::::::::::::::hhhhhhhhlllhhhhhhhhggggggg[eeeeegggggggbbrrrrrrrrrbb]ggggggg22eeeee333ggggggg::EEEEEZZZBBYYCCCEEEEE///	chr17:56073707-56073912(-)$1	205	42	172	249.5081
dd]ggggggg22eeeee:::::::::::bb[eeeee"""ccc$$$$$hhhhhhhhffffff[eeeeebbrrrrrrrrrbb]eeeee22ffffff333hhhhhhhh333ccc]eeeeebb::::eeeeess	chr2:173461747-173461993(+)$1	246	79	209	201.3934
::::::::DDDD}GGGGGGG::::::::eeeeebbmmmmbb]eeeee::::hhhhhhhh[bb"""hhhhhhhh[eeeee%%%%%%bbpppppppbb333eeeee]hhhhhhhh666666bb]hhhhhhhh	chr3:10086760-10087017(+)$1	257	84	214	233.6065
:::::::::::::::::::::::::dddd[a[eeeee####bb[cccddddeeeee[ccchhhhhhhh!!ccclllccc]hhhhhhhh22ccceeeee333dddd22ccc]bb666666eeeee]a]ddd	chr3:195801758-195802025(-)$1	267	83	213	201.3934
ellleeeee:::::::::::::::::EEEEEDDDD:a!!ddddgggggggbbqqqqqqqqbb]ggggggg]dddd22a:::::CCC}IIIIIIIII:::::eeeee[ccc[apppppppa]ccc]eeeee	chr15:85637001-85637275(+)$1	274	81	211	205.3278
ccc:::::::::::::::::::::::::hhhhhhhhlllhhhhhhhh::::dddd[eeeeeffffff[cccpppppppcccffffff]eeeee]dddd::ddddvvvvvvvvvvvvvdddd:eeeeemmm	chr1:6582805-6583048(-)$1	243	79	209	252.7049
{A::::::::::::::::::::::eeeee!!dddd!!dddd!!bb[eeeeedddd[eeeeeggggggg[cccnnnnncccggggggg22eeeeedddd333eeeeebb]dddd22dddd333eeeee:::	chr9:95051319-95051561(-)$1	242	47	177	239.3442
bb333bb]ggggggg:::::::::::::hhhhhhhhlllhhhhhhhh::::ccc[dddd[gggggggcccpppppppccc]ggggggg333ddddccc::dddd$$$$$ccc[dddd[eeeee!!ccccc	chr7:140161236-140161540(-)$1	304	80	210	214.8360
33ffffff]eeeee::::::HHHHHHHHeeeee[bblllbb]eeeeedddd[bb!!ddddhhhhhhhh[cccmmmmccc]hhhhhhhh55555dddd22bbddddHHHHHHHH::::::ccc[bb####e	chr22:22142140-22142389(-)$1	249	89	219	244.8360
3dddd:::::::::::::::::::::::hhhhhhhhlllhhhhhhhhggggggg[eeeeegggggggbbrrrrrrrrrbb]ggggggg22eeeee333ggggggg::::::::::::::eeeee$$$$$d	chr17:56073712-56073938(-)$1	226	68	198	249.5081
ddd^^^^^^^^^^^^^^^^^^^^^^^dddd]dddd]bb]ccc::cccnnnnnccc::JJJJJJJJJJJJcccnnnnncccDDDD}CCCdddd!!ddddllldddd22ddddffffff[dddd!!cccooo	chr11:66389615-66389881(+)$1	266	79	209	225.4098
yyhhhhhhhh]ccc::::::::::eeeee[bbccc!!eeeee!!bb!!ccc[bb[eeeeedddd[bbbb[aooooooabb]bb]dddd22eeeee333bb]ccc22bbeeeee22ccc]bb]eeeee:::	chr14:102231827-102232080(+)$1	253	69	199	227.9508
^^^^^^^^^^^^^^^^^^^^^^^^^^iiiiiiiiigggggggggggggg]a]iiiiiiiiiccc22bbbb22eeeeeccceeeee!!eeeeerrrrrrrrreeeee22eeeee]ccc:::::::::::::	chr3:195795694-195795904(-)$1	210	77	207	224.8360
::::::::::::::::::::::ffffff!!dddd[ccc"""dddd!!ddddffffff[dddd####cccrrrrrrrrrcccdddd]ffffff999999999dddd]dddd]ccc]dddd22ffffff::F	chr3:113528817-113529043(+)$1	226	64	194	211.4754
qffffff22ffffff22bb:::::::EEEEEKKEEEEE{EEEEE:ccc"""dddd[cccddddmmmmdddd22ccc]dddd333ccc::::::::ccclllccc::::EEEEEYYEEEEEYYEEEEE:::	chr3:138402001-138402284(-)$1	283	63	193	211.3934
dddd::::::::::::::::::::::a!!ggggggglllggggggg22a::dddd[eeeeeggggggg[cccmmmmccc]ggggggg]eeeee]ddddGGGGGGGZZZBB}EEEEE::::::eeeeemmm	chr16:259029-259287(-)$1	258	79	209	216.5573
4bb22ccc::iiiiiiiiiooooooiiiiiiiiicccpppppppccc::ffffffcccffffff"""a[iiiiiiiii[bb[ccc&&&&&&&ccc%%%%%%hhhhhhhhppppppphhhhhhhhccc666	chr7:120688535-120688767(+)$1	232	50	180	223.7704
%%%%%cccddddxxxxxxxxxxxxxxxdddd]ccc666666eeeee]ccc]dddd:ddddhhhhhhhh[cccnnnnnccchhhhhhhh22ddddEEEEEFFFFFFMMMMCCC:::::::::::ddddmmm	chr12:57033406-57033623(-)$1	217	43	173	249.5901
[a[bb^^^^^^^^^^^^^^^^^^^^^bb]a]gggggggdddd[ccc[ggggggg!!ddddhhhhhhhh[bbpppppppbbhhhhhhhh55555dddd]gggggggcccdddd::::GGGGGGGBBYYBB}	chr21:45179969-45180232(+)$1	263	80	210	240.7377
FFF:::::::::::::::::::::::eeeeeeeeeellleeeee22eeeeedddd[ddddgggggggbbrrrrrrrrrbb]ggggggg22dddddddd:FFFFFF::::bbbbmmmmbb]bbFFFFFFZZ	chr3:195801604-195801821(-)$1	217	46	176	246.8852
::::::::::::::::::::::::::::hhhhhhhhlllhhhhhhhh::eeeeeeeeeehhhhhhhhcccpppppppccc]hhhhhhhh22eeeee22eeeee::::eeeeepppppppeeeee::::::	chr11:63458503-63458780(+)$1	277	81	211	255.9836
d333dddd55555eeeee]dddd]bb]eeeee:::dddd!!bb[dddd[adddd[eeeeedddd[bbbb[bbmmmmbbbb]bb]dddd22eeeee333dddd]a333ddddbb22dddd:::gggggggq	chr10:11926546-11926813(-)$1	267	78	208	213.5245
gggggg22ccc::::::::::::::::::::::eeeeellleeeee:dddd[ccc[ddddhhhhhhhh[bbpppppppbbhhhhhhhh22ddddccc4444dddd::::cccpppppppcccffffff!!	chr20:57477701-57477951(+)$1	250	77	207	232.4590
%%%%%cccddddxxxxxxxxxxxxxxxdddd]ccc666666eeeee]ccc]ddddeeeeehhhhhhhh[cccnnnnnccchhhhhhhh22eeeee::::::eeeee"""cccpppppppccc333eeeee	chr12:57033423-57033644(-)$1	221	64	194	249.5901
ggggggg:::::::::::::::::::::hhhhhhhhlllhhhhhhhhccc[bb[gggggggggggggg[bbpppppppbbggggggg22gggggggbb4444ccc::::CCC}CCC}CCCZZZDDDD:::	chr1:21070044-21070260(-)$1	216	81	211	239.6721
::::::::::::::::::::::::iiiiiiiii[ccc!!eeeee[a[bbmmmmbb]a]eeeee333ccc]iiiiiiiii::::::::::BBKKEEEEE:::eeeeennnnneeeee::::::ffffff!!	chr1:22027699-22027963(-)$1	264	79	209	222.0491
:::::::::::ffffffqqqqqqqqffffffDDDDKKFFFFFF:eeeee[gggggggddddoooooodddd55555ggggggg22eeeee::::ddddllldddd::FFFFFFYYDDDD:::eeeeemmm	chr15:93455659-93455955(+)$1	296	96	226	233.3606
:::::::::::::ffffffooooooffffffbb[a!!eeeee"""ccc"""dddd[ddddeeeee[ddddoooooodddd333eeeee22dddddddd22ccc55555eeeee22a]bb:ddddccc!!e	chr22:21304623-21304846(+)$1	223	70	200	231.4754
::::::::::::::::::::::::::::hhhhhhhhlllhhhhhhhh::::dddd[ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddddddd:FFFFFF}A}DDDDZZZIIIIIIIII:::::e	chr1:1329993-1330219(-)$1	226	64	194	257.2131

#DB
..........................((((((((((...))))))))))(((...))).((((.(((.(((((((((((((.((((...............(((((.((((((.....)))))).)))))	chr12:94796526-94796782(-)$1	1	82	212	237.4590
........................(((((((((((..(((((.((..((((((((.(((((((((((((.........)).)))))))..))))))))...)))).)))))))..)).)))))))))...	chr2:168770826-168771070(-)$1	1	80	210	268.0327
....))))).........((((((((((((.(((...(((((.((..((((((((.((((((((.(((((.......))).)).))).))))).))))...)))).)))))))...)))....((((...	chr17:29222346-29222618(+)$1	1	68	198	239.8360
.....(((((((...............)))).)))......))))).))).)))).((((((((((((.(((.....)))))))))))..))))((((...))))...)))))))..)).))))))))..	chr12:57033444-57033659(-)$1	1	79	209	249.5901
....)))).....(((((((........))))))).(((((.(((......((((((((((((((.(((.......(((....)))........)))..))))))))..(((.......)))..))))))	chr7:75054069-75054351(-)$1	1	83	213	204.0163
).........................((((.(((((...(((.((.(((((((((.((((((((((((.((......)).))))))))..))))))))...)))))))))).))))).))))(((((((.	chr16:89447601-89447847(-)$1	1	82	212	252.6229
..........................((((((((((...))))))))))...)))))))..))).(((.(((.(((.((((((((......((((.....))))....)))))........)))..))))	chr7:2407398-2407671(+)$1	1	70	200	205.4098
.........................(((((..((((..((((((.(..(((((((((((.(((((((((.((....)))).)))))))...))))))))...))).)))))))..))))...)))))...	chrX:24092894-24093146(+)$1	1	79	209	195.0819
............................((((((((...))))))))....(((.(((((..((((((.((.......))))))))....))))).)))..(((.((....)).)))........)))).	chrX:131194555-131194842(+)$1	1	80	210	220.9836
............................((((((((...)))))))))).))))).((..((((((((((.......))).))))))).)).))))...))))))))..((((((((..(((.((.....	chr19:13053351-13053564(+)$1	1	49	179	241.4754
..........................((((((((((...))))))))))..((((((.((.(((((((.(.((.((((((...((((....))))...)))))).)).).))).....))))))))))))	chr2:61743118-61743368(-)$1	1	82	212	219.5901
(.........................)))))))))))))............((((.((.((((((((((.((....)))).)))))).)).)).))))..(((((((..((((((((.((((.((((...	chr7:119379619-119379870(-)$1	1	80	210	211.3114
...)))))))....))))))))....(((((...)))))((((((..((((((((.(((((((((((((.((....)))).)))))))..))))...)))))))).................((((((..	chr6:86329806-86330079(-)$1	1	90	220	221.6393
...................)))))))..((((((((...))))))))....(((.((((((((((((((.((....)))).))))))..)))))))))....(((....)))........((((((((..	chr4:1726026-1726261(+)$1	1	83	213	258.2786
..........................(((.((((...(((((.((..((((((((.((.(((((((((((......))))..)))))))))...))))...)))).)))))))....)))).)))....(	chr14:103085729-103085986(+)$1	1	80	210	243.1967
(....)))))))................((((((((...))))))))))))))....))))))))))).)))))))))))))...))).))...)).....(((....((((....((..(.(((((((.	chr1:29387703-29387954(+)$1	1	70	200	230.1639
.)))))))................(((((..((((..((((..((.(((((((((.((((((((((((.(((.....))))))))))..)))))))))...))))))).))))..))))...)))))..(	chr9:95051361-95051595(-)$1	1	81	211	239.3442
...))))))).))).)))))......(((.(((((..(((((....(((((((((((.((..((((((.((.......))))))))....)).))))..)))))))..)))))..)))).).)))(((((	chr2:175956438-175956716(-)$1	1	100	230	214.8360
.........................((((((((((.....)))))))))).(((((.....((((((..((....))....)))))))))))....(((..(((((.(((((.......))))).)))))	chr10:3163922-3164221(+)$1	1	83	213	210.1639
.)))))...................(((.(((((..(((((..((.(.((..((((((((((((.((((.((....)))).)).))))..))))).)))..)).).)))))))..)))).).))).((((	chr7:151214316-151214547(-)$1	1	68	198	197.9508
............................((((((((...))))))))))))))))))).)))..)))))))(((.((.(((...((.(((((.(.....).)))))))))).)).)))(((.((((.(((	chr7:75095009-75095267(-)$1	1	81	211	202.3770
).........................(((((((((..((.(((((..((((((((.(.((((((...((((.......))))..))))....)).).))))))))))))).))..)).))))))))))..	chrX:73808166-73808453(-)$1	1	122	252	237.4590
........................((.((((((((....))))))))(((((((.((((((((((((((.........))).))))))....)).))))))))))....((((((((.((((........	chr7:104700349-104700602(+)$1	1	85	215	224.7540
..........(((((((((......)))))))))(((.......)))....((((.((((((((.(((.(((....))).))).))).))))).))))...((((((((.......))))))))((((.(	chr7:120688517-120688735(+)$1	1	68	198	223.7704
)))))))...))))).)))))...)))...)))))((((((((((((((((.(((.((((.((((.(((..((....((((((.................))))))...(((.......))).)).))).	chr7:117825223-117825493(+)$1	1	82	212	206.1475
............................((((((((...))))))))(((((((.(((((((((((((.((.......))))))))))..)))))....)))))))...(((.......)))..(((((.	chr19:29024929-29025164(-)$1	1	66	196	244.1803
........................(((((..((((....((..((..((((((((.(((((((((((((.........)).))))))..)))))))))...)))).)).))....))))...)))))...	chr3:195787516-195787774(-)$1	1	80	210	263.0327
............................((((((((...))))))))....((((.((((((((((((.((.......))))))))))..)))))))).)))))).).))))...)))))))))......	chr1:1330019-1330237(-)$1	1	82	212	257.2131
..........................))))))))))))))))))))))).).))))))))))))..(((((((((((((((((((..(((((.........)))))..))))).((....))(((((...	chr3:195795652-195795894(-)$1	1	67	197	224.8360
))(((((((...................((((((((...))))))))(((.((((.(((((((.((((.(((.....))))))).)))..))))))))....)))..)))))))............((((	chr15:89443330-89443579(-)$1	1	81	211	241.3934
...........................))))))))).)))))).))))(((((((((((((((((((((.........)).)))))))))).)))))...))))...................(((....	chr1:29388002-29388258(+)$1	1	81	211	204.6721
....)))))...................((((((((...))))))))....((((.((((((((.((((((.....)))).)).))))..))))))))))))))...)))))))........(((((((.	chr8:130515801-130516085(-)$1	1	116	246	234.9180
.((.(((((...................((((((((...))))))))(((((((.((((((((((((((.........)).)))))))..)))))...)))))))..)))))...))..))))))))...	chr17:56073707-56073912(-)$1	1	42	172	249.5081
)).)))))))..)))))...........((.(((((...(((.....((((((((((((((.(((((((.........)).)))))..))))))...))))))))...))).)))))))....(((((..	chr2:173461747-173461993(+)$1	1	79	209	201.3934
........)))).)))))))........(((((((....)).)))))....((((((((.((...((((((((.(((((......((.......))...))))).))))))))......)).))))))))	chr3:10086760-10087017(+)$1	1	84	214	233.6065
.........................((((.(.(((((....((.((((((((((((.(((((((((((..(((...))).))))))))..))))))))...))))..))).))......))))).).)))	chr3:195801758-195802025(-)$1	1	83	213	201.3934
(...))))).................))))))))).(..(((((((((((((........)).))))))).))))..).....))).))))))))).....(((((.(((.(.......).))).)))))	chr15:85637001-85637275(+)$1	1	81	211	205.3278
))).........................((((((((...))))))))....((((.(((((((((((.(((.......))))))))).))))).))))..((((.............)))).(((((...	chr1:6582805-6583048(-)$1	1	79	209	252.7049
.(......................(((((..((((..((((..((.(((((((((.((((((((((((.(((.....))))))))))..)))))))))...))))))).))))..))))...)))))...	chr9:95051319-95051561(-)$1	1	47	177	239.3442
))...)).))))))).............((((((((...))))))))....(((.((((.((((((((((.......))).)))))))...)))))))..((((.....(((.((((.(((((..(((((	chr7:140161236-140161540(-)$1	1	80	210	214.8360
..)))))).)))))......(((((((((((((.((...)).)))))((((.((..((((((((((((.(((....))).)))))))).....))))..))))))))))))))......(((.((....(	chr22:22142140-22142389(-)$1	1	89	219	244.8360
.)))).......................((((((((...))))))))(((((((.((((((((((((((.........)).)))))))..)))))...)))))))..............(((((.....(	chr17:56073712-56073938(-)$1	1	68	198	249.5081
(((.......................)))).)))).)).)))..(((.....)))..))))))))))))(((.....))))))).)))((((..((((...))))..))))((((((.((((..(((...	chr11:66389615-66389881(+)$1	1	79	209	225.4098
..)))))))).)))..........(((((.(((((..(((((..((..(((.((.(((((((((.((((.(......))).)).))))..)))))...)).)))..)))))))..))).)).)))))...	chr14:102231827-102232080(+)$1	1	69	199	227.9508
..........................))))))))))))))))))))))).).))))))))))))..))))..)))))((((((((..(((((.........)))))..))))).))).............	chr3:195795694-195795904(-)$1	1	77	207	224.8360
......................((((((..((((.(((...((((..((((((((((.((((....(((.........))))))).)))))).........)))).)))).))).))))..))))))..)	chr3:113528817-113529043(+)$1	1	64	194	211.4754
.))))))..))))))..)).......(((((..(((((.(((((.(((...((((.(((((((....))))..))).))))...)))........(((...)))....)))))..)))))..)))))...	chr3:138402001-138402284(-)$1	1	63	193	211.3934
))))......................(..(((((((...)))))))..)..((((.((((((((((((.(((....))).))))))).))))).)))))))))))...)).)))))......(((((...	chr16:259029-259287(-)$1	1	79	209	216.5573
.))..)))..(((((((((......)))))))))(((.......)))..(((((((((((((((...(.(((((((((.((.(((.......(((......((((((((.......)))))))))))...	chr7:120688535-120688767(+)$1	1	50	180	223.7704
.....(((((((...............)))).)))......))))).))).)))).((((((((((((.(((.....)))))))))))..)))))))))((((((....(((...........((((...	chr12:57033406-57033623(-)$1	1	43	173	249.5901
.(.((.....................)).).)))))))((((.(((.(((((((..((((((((((((.((.......)))))))))).....)))).))))))))))))))....)))))))))..)).	chr21:45179969-45180232(+)$1	1	80	210	240.7377
(((.......................((((((((((...)))))..)))))((((.(((((((((((((.........)).)))))))..)))))))).))))))....((((....)).))))))))..	chr3:195801604-195801821(-)$1	1	46	176	246.8852
............................((((((((...))))))))..(((((((((((((((((((((.......))).))))))))..)))))..)))))....(((((.......)))))......	chr11:63458503-63458780(+)$1	1	81	211	255.9836
)...)))).....))))).)))).)).)))))...((((..((.((((.(((((.(((((((((.((((.((....)))).)).))))..)))))...)))).)...))))))..))))...(((((((.	chr10:11926546-11926813(-)$1	1	78	208	213.5245
))))))..)))......................(((((...))))).((((.(((.((((((((((((.((.......))))))))))..)))))))....))))....(((.......)))((((((..	chr20:57477701-57477951(+)$1	1	77	207	232.4590
.....(((((((...............)))).)))......))))).))).))))(((((((((((((.(((.....)))))))))))..)))))......(((((...(((.......)))...)))))	chr12:57033423-57033644(-)$1	1	64	194	249.5901
))))))).....................((((((((...))))))))(((.((.((((((((((((((.((.......)))))))))..)))))))))....)))....))).))).)))...))))...	chr1:21070044-21070260(-)$1	1	81	211	239.6721
........................(((((((((.(((..(((((.(.((....)).).)))))...))).)))))))))..........((..(((((...(((((.....)))))......((((((..	chr1:22027699-22027963(-)$1	1	79	209	222.0491
...........((((((........))))))((((..((((((.(((((.(((((((((((......)))).....)))))))..)))))....((((...))))..))))))..))))...(((((...	chr15:93455659-93455955(+)$1	1	96	226	233.3606
.............((((((......))))))((.(..(((((...(((...((((.(((((((((.((((......))))...)))))..))))))))..))).....)))))..).)).(((((((..(	chr22:21304623-21304846(+)$1	1	70	200	231.4754
............................((((((((...))))))))....((((.((((((((((((.((.......))))))))))..)))))))).)))))).).))))...))))))))).....(	chr1:1329993-1330219(-)$1	1	64	194	257.2131

#PSSM
u : 0.55	U : 0.14	A : 0.08	C : 0.06	g : 0.06	a : 0.03	G : 0.03	c : 0.01	
u : 0.50	a : 0.11	C : 0.09	U : 0.09	g : 0.06	A : 0.04	G : 0.04	c : 0.01	
u : 0.65	c : 0.08	G : 0.06	C : 0.04	g : 0.04	A : 0.04	U : 0.04	
u : 0.67	g : 0.08	C : 0.08	U : 0.06	a : 0.03	A : 0.03	c : 0.03	
u : 0.70	A : 0.06	c : 0.06	g : 0.04	a : 0.03	C : 0.03	U : 0.03	G : 0.01	
u : 0.65	a : 0.09	c : 0.08	G : 0.06	g : 0.04	A : 0.04	
u : 0.80	a : 0.06	c : 0.04	C : 0.03	U : 0.01	A : 0.01	G : 0.01	
u : 0.80	g : 0.06	c : 0.06	a : 0.01	A : 0.01	G : 0.01	C : 0.01	
u : 0.81	g : 0.06	a : 0.04	A : 0.03	c : 0.01	C : 0.01	
u : 0.90	a : 0.03	c : 0.03	A : 0.01	U : 0.01	
u : 0.81	c : 0.06	g : 0.04	a : 0.03	U : 0.01	C : 0.01	
u : 0.90	c : 0.04	U : 0.01	a : 0.01	g : 0.01	
u : 0.95	G : 0.01	c : 0.01	g : 0.01	
u : 0.90	g : 0.08	a : 0.01	
u : 0.95	g : 0.03	a : 0.01	
u : 0.91	g : 0.04	c : 0.01	a : 0.01	
u : 0.93	g : 0.03	c : 0.01	a : 0.01	
u : 0.93	a : 0.03	c : 0.03	
u : 0.90	g : 0.06	a : 0.01	c : 0.01	
u : 0.98	a : 0.01	
u : 0.88	a : 0.06	g : 0.04	
u : 0.93	g : 0.03	a : 0.01	c : 0.01	
u : 0.98	g : 0.01	
u : 0.91	c : 0.08	
u : 0.93	c : 0.03	g : 0.03	
u : 0.85	g : 0.13	c : 0.01	
g : 0.67	u : 0.19	a : 0.13	
a : 0.67	g : 0.16	u : 0.11	c : 0.04	
g : 0.70	a : 0.19	u : 0.09	
a : 0.67	g : 0.18	c : 0.08	u : 0.06	
c : 0.60	g : 0.14	u : 0.13	a : 0.11	
a : 0.54	g : 0.37	u : 0.06	c : 0.01	
g : 0.78	a : 0.14	c : 0.04	u : 0.01	
a : 0.65	g : 0.24	u : 0.06	c : 0.03	
g : 0.83	u : 0.11	a : 0.04	
u : 0.77	g : 0.11	c : 0.08	a : 0.03	
c : 0.77	u : 0.11	g : 0.06	a : 0.04	
u : 0.90	c : 0.04	g : 0.03	a : 0.01	
c : 0.57	u : 0.31	g : 0.08	a : 0.03	
g : 0.45	a : 0.34	c : 0.13	u : 0.06	
c : 0.86	u : 0.09	g : 0.01	a : 0.01	
u : 0.75	a : 0.13	c : 0.11	
c : 0.72	u : 0.16	g : 0.11	
u : 0.96	g : 0.01	c : 0.01	
g : 0.88	u : 0.04	a : 0.03	c : 0.03	
u : 0.91	a : 0.04	g : 0.03	
c : 0.63	u : 0.31	g : 0.03	a : 0.01	
a : 0.47	g : 0.37	u : 0.13	c : 0.01	
c : 0.86	u : 0.08	g : 0.04	
c : 0.93	g : 0.04	u : 0.01	
c : 0.85	u : 0.14	
a : 0.80	g : 0.13	u : 0.06	
g : 0.88	a : 0.08	u : 0.03	
g : 0.93	c : 0.03	a : 0.01	u : 0.01	
c : 0.88	g : 0.04	a : 0.04	u : 0.01	
u : 1.00	
g : 0.93	a : 0.06	
g : 0.95	a : 0.04	
a : 0.91	g : 0.04	u : 0.01	c : 0.01	
g : 0.91	a : 0.04	c : 0.03	
u : 0.96	g : 0.03	
g : 0.90	a : 0.08	u : 0.01	
c : 0.88	u : 0.09	g : 0.01	
a : 0.95	g : 0.04	
g : 0.80	a : 0.18	c : 0.01	
u : 1.00	
g : 0.98	a : 0.01	
g : 0.98	c : 0.01	
c : 0.70	u : 0.26	a : 0.03	
g : 0.63	a : 0.18	u : 0.09	c : 0.08	
c : 0.57	u : 0.37	a : 0.04	
g : 0.59	a : 0.26	c : 0.13	u : 0.01	
a : 0.85	g : 0.13	u : 0.01	
u : 0.98	g : 0.01	
c : 0.86	u : 0.08	g : 0.03	a : 0.01	
u : 0.90	a : 0.06	g : 0.01	c : 0.01	
c : 0.68	u : 0.29	a : 0.01	
g : 0.70	a : 0.21	u : 0.08	
g : 0.90	c : 0.08	a : 0.01	
c : 0.95	u : 0.03	g : 0.01	
u : 0.98	c : 0.01	
c : 0.90	u : 0.08	a : 0.01	
a : 0.96	u : 0.01	c : 0.01	
c : 0.96	g : 0.01	a : 0.01	
u : 0.95	c : 0.04	
g : 0.95	a : 0.03	u : 0.01	
c : 0.95	u : 0.01	g : 0.01	a : 0.01	
a : 0.96	u : 0.03	
a : 0.73	g : 0.16	u : 0.04	c : 0.04	
c : 0.80	u : 0.08	g : 0.06	a : 0.04	
c : 0.86	u : 0.09	a : 0.01	g : 0.01	
u : 1.00	
c : 0.91	u : 0.08	
c : 0.57	u : 0.29	a : 0.06	g : 0.06	
g : 0.68	a : 0.29	u : 0.01	
c : 0.90	u : 0.04	a : 0.03	g : 0.01	
c : 0.93	u : 0.04	g : 0.01	
u : 0.96	c : 0.01	a : 0.01	
c : 0.96	u : 0.03	
c : 0.95	u : 0.04	
c : 0.63	u : 0.34	g : 0.01	
g : 0.59	a : 0.39	u : 0.01	
g : 0.90	a : 0.08	u : 0.01	
g : 0.93	a : 0.06	
u : 0.83	c : 0.16	
u : 0.91	g : 0.04	c : 0.03	
c : 0.91	u : 0.08	
a : 0.98	c : 0.01	
a : 0.90	c : 0.04	u : 0.03	g : 0.01	
g : 0.88	a : 0.08	u : 0.01	c : 0.01	
c : 0.65	u : 0.34	
g : 0.70	a : 0.21	c : 0.08	
a : 0.95	g : 0.03	u : 0.01	
u : 0.98	c : 0.01	
u : 0.81	c : 0.14	g : 0.03	
c : 0.88	a : 0.06	u : 0.03	g : 0.01	
u : 1.00	
c : 0.81	u : 0.16	g : 0.01	
c : 0.83	g : 0.06	u : 0.04	a : 0.04	
u : 0.81	c : 0.13	g : 0.04	
g : 0.81	a : 0.14	u : 0.01	c : 0.01	
c : 0.93	u : 0.03	g : 0.01	a : 0.01	
c : 0.90	u : 0.09	
u : 0.93	c : 0.06	
c : 0.96	u : 0.01	a : 0.01	
a : 0.95	u : 0.03	g : 0.01	
g : 0.91	a : 0.03	u : 0.03	c : 0.01	
c : 0.95	g : 0.01	u : 0.01	a : 0.01	
c : 0.88	u : 0.06	a : 0.03	g : 0.01	
u : 0.85	c : 0.08	a : 0.06	

#score	14032.131147540977
#seq	61
#width	130
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_CDS_m1_run2.nuc.txt

#NT
UUUUUUCCCCUUUCUUUU	chr7:1608855-1609102(-)$1	247	73	91	25.5217
UUUUUUUUCCUUUCCUUU	chr6:138192239-138192500(+)$1	261	88	106	29.1086
UUUUUUAACUUUUGAUUU	chrX:110928089-110928325(+)$1	236	13	31	23.3478
UUUUUUUUCUUUUCUUUU	chr12:102406826-102407078(-)$1	252	88	106	38.2391
CUUUUUCUUUUUUCUGUU	chr9:133729323-133729573(+)$1	250	91	109	27.0434
ACuuuuuucuuuuuuuuu	chr11:10820528-10820767(-)$1	239	78	96	30.7391
CUUUUUUCCUUUUGUUCU	chr14:35871908-35872179(-)$1	271	91	109	25.4130
UGGUUUUUGUUUUUUUUU	chr12:116418601-116418857(-)$1	256	79	97	29.1086
UUUUUGUUCUUGUUUCUU	chr1:26799863-26800132(+)$1	269	88	106	25.9565
UGUUUUUUCUUUUCUUUC	chr5:133725803-133726073(+)$1	270	87	105	30.8478
UAUGUUUUAUUUUCUUUA	chr10:1038319-1038575(+)$1	256	84	102	25.3043
UUGUUUUGUUUUUCUUUU	chr7:158450950-158451210(-)$1	260	81	99	30.9565
UUUCAUUUUUUUUUUUUU	chr6:64289848-64290102(+)$1	254	85	103	30.9565
CUUUUUUCCUUUCCUUUU	chrX:55748496-55748757(+)$1	261	87	105	26.9347
UUUAUGUGUUUUUCUUUU	chr8:30958252-30958522(+)$1	270	87	105	27.3695
GUAUUUUUCUUUUCUCCU	chr2:160619263-160619531(+)$1	268	90	108	23.5652
uuuuuuuuuuuuuuuuuu	chr9:134067483-134067736(+)$1	253	73	91	38.6739
UGAUUUUUUUAUUCUUCU	chr2:24086271-24086531(-)$1	260	86	104	23.9999
uucuuuuucuucuuucuu	chr12:104714756-104715031(+)$1	275	71	89	25.9565
CUUUUUUUUUUUUCUCUU	chr22:29682793-29683057(+)$1	264	87	105	31.9347
uuuuuuuuuuuuucuagc	chr18:12986719-12987043(+)$1	324	8	26	26.7173
aauuuuuuuuuuuuuuuu	chr2:29129214-29129471(+)$1	257	84	102	31.7173
UGUAUUUUUUUUUCUUUG	chr22:19398138-19398413(-)$1	275	87	105	27.8043
UGuuuuuucuuuuuucuu	chr11:47189424-47189723(-)$1	299	275	293	31.3913
UUUUUUUUUUUUUCUUCU	chr16:11862204-11862467(-)$1	263	78	96	35.5217
UUUCAUAUUUUUUCUUUU	chr3:182662826-182663076(-)$1	250	91	109	26.9347
uuuuauuuauuuuaauuu	chr4:79799769-79800025(+)$1	256	59	77	25.9565
UUUUUUUUUUUUCCUUUU	chr4:164440373-164440621(+)$1	248	88	106	35.0869
UUUAUUUUUUAUUCUUGU	chr13:33096254-33096513(-)$1	259	219	237	26.8260
GUUUUUUUCUUUCUUUUU	chr3:197574166-197574423(+)$1	257	80	98	30.1956
UUUUUUUUUUUUUUUUUU	chr3:140675264-140675527(+)$1	263	84	102	38.6739
UUAuuuuuuuuuucuuuu	chr4:95494388-95494652(+)$1	264	76	94	35.0869
UUUUUUUUUUUUUUUUUU	chr8:30567270-30567527(-)$1	257	86	104	38.6739
uuuuuuuuuuuuuuuuuu	chr1:207532781-207533043(+)$1	262	80	98	38.6739
uucuuuuucuucucuuuu	chr1:39796769-39797021(+)$1	252	55	73	29.7608
uuuuuuuuuuuuuuuuuu	chr1:21102342-21102589(-)$1	247	68	86	38.6739
UCUCUUUUUUUUUUUUUU	chr1:153617421-153617714(+)$1	293	85	103	31.6086
UAUUUGUUAUUUUGUUUU	chr3:43740681-43740916(+)$1	235	57	75	27.6956
UGUGAUUUUUUUUUUUUU	chr15:69714546-69714793(+)$1	247	87	105	27.6956
UUUUUUUUUUUUUCUCCU	chr10:103567517-103567770(-)$1	253	92	110	32.0434
uuuuuuuuuuuuuuuuuu	chr1:21102389-21102608(-)$1	219	87	105	38.6739
UUUUUGUCCUUUUUUUCU	chr16:21629076-21629332(+)$1	256	86	104	26.7173
uuuuuuuuuuuuuuuuuu	chr18:45395668-45395928(-)$1	260	65	83	38.6739
AUUUUUUUCUUUCCUUUU	chr21:30324444-30324694(-)$1	250	86	104	30.6304
UAUUUGUUAUUUUGUUUU	chr3:43740650-43740881(+)$1	231	88	106	27.6956

#otherMatches

#Struct PSSM
:ccc!!eeeee[aqqqqq	chr5:138979850-138980113(+)$1	263	81	99	30.4130
:::::::::dddd!!ccc	chr7:1608855-1609102(-)$1	247	73	91	25.5217
666666ggggggg:ccce	chr6:138192239-138192500(+)$1	261	88	106	29.1086
eemmmmeeeee22a:ggg	chrX:110928089-110928325(+)$1	236	13	31	23.3478
::::GGGGGGGKKEEEEE	chr12:102406826-102407078(-)$1	252	88	106	38.2391
EE}DDDDZZZEEEEE:::	chr9:133729323-133729573(+)$1	250	91	109	27.0434
KIIIIIIIII::::::gg	chr11:10820528-10820767(-)$1	239	78	96	30.7391
dddd]hhhhhhhh:::::	chr14:35871908-35872179(-)$1	271	91	109	25.4130
EEEEEggggggg[hhhhh	chr12:116418601-116418857(-)$1	256	79	97	29.1086
^^^^^ggggggg]bbccc	chr1:26799863-26800132(+)$1	269	88	106	25.9565
B{GGGGGGGEEEEEFFFF	chr5:133725803-133726073(+)$1	270	87	105	30.8478
KFFFFFF:::::eeeee!	chr10:1038319-1038575(+)$1	256	84	102	25.3043
33ffffff4444gggggg	chr7:158450950-158451210(-)$1	260	81	99	30.9565
dddd^^^^^^^^^^^^^^	chr6:64289848-64290102(+)$1	254	85	103	30.9565
2iiiiiiiiieeeee:::	chrX:55748496-55748757(+)$1	261	87	105	26.9347
::ccc[cccuuuuuuuuu	chr8:30958252-30958522(+)$1	270	87	105	27.3695
:::::::::::GGGGGGG	chr2:160619263-160619531(+)$1	268	90	108	23.5652
^^^^^^^^^^^^^^^^^^	chr9:134067483-134067736(+)$1	253	73	91	38.6739
[bbuuuuuuuuuuuubb]	chr2:24086271-24086531(-)$1	260	86	104	23.9999
^^^^^^^^^^^^^^^^ee	chr12:104714756-104715031(+)$1	275	71	89	25.9565
ooooooggggggg:::::	chr22:29682793-29683057(+)$1	264	87	105	31.9347
::::::::::::::::CC	chr18:12986719-12987043(+)$1	324	8	26	26.7173
=======:::::::::::	chr2:29129214-29129471(+)$1	257	84	102	31.7173
ffffff============	chr22:19398138-19398413(-)$1	275	87	105	27.8043
vvvvvvvvdddd22gggg	chr11:47189424-47189723(-)$1	299	275	293	31.3913
::::::::::::::::::	chr16:11862204-11862467(-)$1	263	78	96	35.5217
::::::::::::::::::	chr3:182662826-182663076(-)$1	250	91	109	26.9347
]ccc:::::::::::::E	chr4:79799769-79800025(+)$1	256	59	77	25.9565
TTTTTTTTJJJJJJJJJJ	chr4:164440373-164440621(+)$1	248	88	106	35.0869
fffff]ffffff22ffff	chr13:33096254-33096513(-)$1	259	219	237	26.8260
fnnnnnffffff::::::	chr3:197574166-197574423(+)$1	257	80	98	30.1956
::::::::::::::::::	chr3:140675264-140675527(+)$1	263	84	102	38.6739
nnffffff55555ccc44	chr4:95494388-95494652(+)$1	264	76	94	35.0869
d:::::::::::::::::	chr8:30567270-30567527(-)$1	257	86	104	38.6739
::::::::::JJJJJJJJ	chr1:207532781-207533043(+)$1	262	80	98	38.6739
[dddd"""bb[dddd[ee	chr1:39796769-39797021(+)$1	252	55	73	29.7608
==[dddd+++++++++++	chr1:21102342-21102589(-)$1	247	68	86	38.6739
hhhhhh::::::::iiii	chr1:153617421-153617714(+)$1	293	85	103	31.6086
HHHHHiiiiiiiii!!ee	chr3:43740681-43740916(+)$1	235	57	75	27.6956
[ccc^^^^^^^^^^^^^^	chr15:69714546-69714793(+)$1	247	87	105	27.6956
::::::::::::::HHHH	chr10:103567517-103567770(-)$1	253	92	110	32.0434
==[dddd+++++++++++	chr1:21102389-21102608(-)$1	219	87	105	38.6739
:::::::::::::::fff	chr16:21629076-21629332(+)$1	256	86	104	26.7173
eeexxxxxxxxxxxxxxx	chr18:45395668-45395928(-)$1	260	65	83	38.6739
wwwwwwwwwwdddddddd	chr21:30324444-30324694(-)$1	250	86	104	30.6304
:::::iiiiiiiii!!ee	chr3:43740650-43740881(+)$1	231	88	106	27.6956

#DB
.(((..(((((.(.....	chr5:138979850-138980113(+)$1	1	81	99	30.4130
.........((((..(((	chr7:1608855-1609102(-)$1	1	73	91	25.5217
......))))))).((((	chr6:138192239-138192500(+)$1	1	88	106	29.1086
((....)))))..).(((	chrX:110928089-110928325(+)$1	1	13	31	23.3478
....(((((((..(((((	chr12:102406826-102407078(-)$1	1	88	106	38.2391
)).))))...)))))...	chr9:133729323-133729573(+)$1	1	91	109	27.0434
.(((((((((......((	chr11:10820528-10820767(-)$1	1	78	96	30.7391
)))).)))))))).....	chr14:35871908-35872179(-)$1	1	91	109	25.4130
((((((((((((.(((((	chr12:116418601-116418857(-)$1	1	79	97	29.1086
.....))))))).)))))	chr1:26799863-26800132(+)$1	1	88	106	25.9565
(.((((((((((((((((	chr5:133725803-133726073(+)$1	1	87	105	30.8478
.((((((.....(((((.	chr10:1038319-1038575(+)$1	1	84	102	25.3043
..))))))....))))))	chr7:158450950-158451210(-)$1	1	81	99	30.9565
((((..............	chr6:64289848-64290102(+)$1	1	85	103	30.9565
.))))))))))))))...	chrX:55748496-55748757(+)$1	1	87	105	26.9347
..(((.(((.........	chr8:30958252-30958522(+)$1	1	87	105	27.3695
...........(((((((	chr2:160619263-160619531(+)$1	1	90	108	23.5652
..................	chr9:134067483-134067736(+)$1	1	73	91	38.6739
.((............)).	chr2:24086271-24086531(-)$1	1	86	104	23.9999
................))	chr12:104714756-104715031(+)$1	1	71	89	25.9565
......))))))).....	chr22:29682793-29683057(+)$1	1	87	105	31.9347
................((	chr18:12986719-12987043(+)$1	1	8	26	26.7173
)))))))...........	chr2:29129214-29129471(+)$1	1	84	102	31.7173
))))))((((((((((((	chr22:19398138-19398413(-)$1	1	87	105	27.8043
........))))..))))	chr11:47189424-47189723(-)$1	1	275	293	31.3913
..................	chr16:11862204-11862467(-)$1	1	78	96	35.5217
..................	chr3:182662826-182663076(-)$1	1	91	109	26.9347
.))).............(	chr4:79799769-79800025(+)$1	1	59	77	25.9565
........((((((((((	chr4:164440373-164440621(+)$1	1	88	106	35.0869
))))).))))))..))))	chr13:33096254-33096513(-)$1	1	219	237	26.8260
(.....))))))......	chr3:197574166-197574423(+)$1	1	80	98	30.1956
..................	chr3:140675264-140675527(+)$1	1	84	102	38.6739
..)))))).....)))..	chr4:95494388-95494652(+)$1	1	76	94	35.0869
).................	chr8:30567270-30567527(-)$1	1	86	104	38.6739
..........((((((((	chr1:207532781-207533043(+)$1	1	80	98	38.6739
.((((...((.((((.((	chr1:39796769-39797021(+)$1	1	55	73	29.7608
((.((((...........	chr1:21102342-21102589(-)$1	1	68	86	38.6739
))))))........((((	chr1:153617421-153617714(+)$1	1	85	103	31.6086
((((((((((((((..((	chr3:43740681-43740916(+)$1	1	57	75	27.6956
.(((..............	chr15:69714546-69714793(+)$1	1	87	105	27.6956
..............((((	chr10:103567517-103567770(-)$1	1	92	110	32.0434
((.((((...........	chr1:21102389-21102608(-)$1	1	87	105	38.6739
...............(((	chr16:21629076-21629332(+)$1	1	86	104	26.7173
(((...............	chr18:45395668-45395928(-)$1	1	65	83	38.6739
..........))))))))	chr21:30324444-30324694(-)$1	1	86	104	30.6304
.....(((((((((..((	chr3:43740650-43740881(+)$1	1	88	106	27.6956

#PSSM
U : 0.60	u : 0.19	C : 0.08	A : 0.04	G : 0.04	a : 0.02	
U : 0.54	u : 0.19	G : 0.13	A : 0.06	C : 0.04	a : 0.02	
U : 0.63	u : 0.21	A : 0.06	G : 0.04	c : 0.04	
U : 0.52	u : 0.28	C : 0.08	A : 0.06	G : 0.04	
U : 0.65	u : 0.26	A : 0.06	a : 0.02	
U : 0.60	u : 0.28	G : 0.10	
U : 0.63	u : 0.28	C : 0.04	A : 0.04	
U : 0.56	u : 0.28	C : 0.08	G : 0.04	A : 0.02	
U : 0.34	C : 0.28	u : 0.17	c : 0.08	A : 0.06	G : 0.02	a : 0.02	
U : 0.67	u : 0.28	C : 0.04	
U : 0.67	u : 0.28	A : 0.04	
U : 0.69	u : 0.23	c : 0.04	G : 0.02	
U : 0.60	u : 0.28	C : 0.10	
C : 0.41	U : 0.21	u : 0.19	G : 0.08	c : 0.06	a : 0.02	
U : 0.67	u : 0.26	C : 0.02	A : 0.02	a : 0.02	
U : 0.60	u : 0.21	C : 0.08	c : 0.04	G : 0.02	a : 0.02	
U : 0.56	u : 0.26	C : 0.13	g : 0.02	G : 0.02	
U : 0.65	u : 0.26	C : 0.02	A : 0.02	c : 0.02	G : 0.02	

#score	1400.5217391304332
#seq	46
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_UTR_m3_run1.nuc.txt

#NT
CCGGACGGGGCGGGG	chr17:74732714-74732970(-)$1	256	186	201	19.3750
GAGGAGGCAGAGGCU	chr17:26940991-26941300(-)$1	309	102	117	18.7500
GUGGAcgcggcggcg	chr6:43738480-43738702(+)$1	222	32	47	22.5000
AAGGCCGCCGAGGCG	chr11:62609091-62609322(-)$1	231	12	27	23.1250
agggaggacgaggcc	chr3:100428670-100428988(+)$1	318	56	71	18.1250
ccgggcggggcgggg	chr1:245026262-245026521(-)$1	259	94	109	16.8750
AAGGCCGCCGAGGCG	chr11:62609122-62609357(-)$1	235	47	62	23.1250

#otherMatches

#Struct PSSM
eeee:JJJJJJJJJJ	chr17:79894570-79894827(-)$1	257	219	234	20.6250
DDDDYYFFFFFFfff	chr17:74732714-74732970(-)$1	256	186	201	19.3750
)))))cccmmmmccc	chr17:26940991-26941300(-)$1	309	102	117	18.7500
lla22ccc]adddd:	chr6:43738480-43738702(+)$1	222	32	47	22.5000
ggggggg!!gggggg	chr11:62609091-62609322(-)$1	231	12	27	23.1250
EEE{CCC{ALLLGGG	chr3:100428670-100428988(+)$1	318	56	71	18.1250
iii22ffffffDDDD	chr1:245026262-245026521(-)$1	259	94	109	16.8750
ggggggg!!gggggg	chr11:62609122-62609357(-)$1	235	47	62	23.1250

#DB
)))).))))))))))	chr17:79894570-79894827(-)$1	1	219	234	20.6250
))))..))))))(((	chr17:74732714-74732970(-)$1	1	186	201	19.3750
.....(((....)))	chr17:26940991-26941300(-)$1	1	102	117	18.7500
..)..))).))))).	chr6:43738480-43738702(+)$1	1	32	47	22.5000
(((((((..((((((	chr11:62609091-62609322(-)$1	1	12	27	23.1250
(((.(((.(...(((	chr3:100428670-100428988(+)$1	1	56	71	18.1250
)))..))))))((((	chr1:245026262-245026521(-)$1	1	94	109	16.8750
(((((((..((((((	chr11:62609122-62609357(-)$1	1	47	62	23.1250

#PSSM
G : 0.37	A : 0.25	C : 0.12	a : 0.12	c : 0.12	
A : 0.37	G : 0.12	C : 0.12	U : 0.12	g : 0.12	c : 0.12	
G : 0.75	g : 0.25	
G : 0.75	g : 0.25	
A : 0.50	C : 0.25	a : 0.12	g : 0.12	
C : 0.50	c : 0.25	G : 0.12	g : 0.12	
G : 0.62	g : 0.37	
C : 0.37	G : 0.25	c : 0.12	a : 0.12	g : 0.12	
g : 0.25	C : 0.25	U : 0.12	G : 0.12	A : 0.12	c : 0.12	
G : 0.62	g : 0.37	
A : 0.50	c : 0.25	C : 0.12	a : 0.12	
G : 0.62	g : 0.37	
G : 0.62	g : 0.37	
C : 0.50	c : 0.25	G : 0.12	g : 0.12	
G : 0.37	g : 0.25	C : 0.12	U : 0.12	c : 0.12	

#score	162.5
#seq	8
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_transcript_m3_run1.nuc.txt

#NT
UCUG	chr15:25229679-25229945(+)$1	266	9	13	12.0000
UCUG	chr16:84751067-84751353(+)$1	286	107	111	12.0000
UCUG	chr14:39736646-39736899(+)$1	253	203	207	12.0000
ucug	chr14:39835405-39835713(+)$1	308	48	52	12.0000
ucug	chr7:17955143-17955416(-)$1	273	37	41	12.0000
UCUG	chr16:1361232-1361526(+)$1	294	13	17	12.0000
ucug	chr1:212932919-212933215(-)$1	296	8	12	12.0000
UCUG	chrY:2716305-2716601(+)$1	296	130	134	12.0000
UCUG	chr2:101766291-101766610(-)$1	319	68	72	12.0000
UCUG	chr19:34872711-34872951(+)$1	240	44	48	12.0000
ucug	chr1:91458739-91459003(-)$1	264	6	10	12.0000
UCUG	chr2:61764488-61764767(-)$1	279	66	70	12.0000
ucug	chr19:16985579-16985829(+)$1	250	12	16	12.0000
ucug	chr11:102285935-102286196(-)$1	261	93	97	12.0000
UCUG	chr17:40628529-40628799(+)$1	270	121	125	12.0000
UCUG	chr19:57349690-57349910(-)$1	220	163	167	12.0000
ucug	chr14:32088900-32089183(+)$1	283	5	9	12.0000
UCUG	chr15:25229745-25230034(+)$1	289	76	80	12.0000
UCUG	chr5:73935791-73936095(-)$1	304	203	207	12.0000
UCUG	chr2:118853236-118853560(+)$1	324	78	82	12.0000
UCUG	chr6:157258063-157258449(+)$1	386	46	50	12.0000
UCUG	chr1:20237057-20237316(+)$1	259	71	75	12.0000
UCUG	chr2:118846237-118846531(+)$1	294	148	152	12.0000
UCUG	chr6:167345757-167346060(-)$1	303	246	250	12.0000
ucug	chr12:11268930-11269264(-)$1	334	59	63	12.0000
ucug	chr7:7234190-7234477(+)$1	287	158	162	12.0000
UCUG	chr11:65192407-65192677(+)$1	270	118	122	12.0000
ucug	chr19:16985684-16985993(+)$1	309	4	8	12.0000
ucug	chr10:43314069-43314421(+)$1	352	1	5	12.0000
UCUG	chr20:60638129-60638408(-)$1	279	38	42	12.0000
uCUG	chr3:196997959-196998240(-)$1	281	54	58	12.0000
UCUG	chr9:19231072-19231350(+)$1	278	72	76	12.0000
UCUG	chr2:236431035-236431327(+)$1	292	8	12	12.0000
UCUG	chr2:42425956-42426243(+)$1	287	37	41	12.0000
UCUG	chr5:1625058-1625311(-)$1	253	88	92	12.0000
UCUG	chr17:55365127-55365388(+)$1	261	3	7	12.0000
UCUG	chr20:34250500-34250837(-)$1	337	259	263	12.0000
UCUG	chr6:167345706-167345957(-)$1	251	143	147	12.0000
UCUG	chr12:133402597-133402857(-)$1	260	93	97	12.0000
ucug	chr6:37918068-37918344(+)$1	276	100	104	12.0000
UCUG	chr9:37184561-37184862(+)$1	301	58	62	12.0000
ucug	chr18:9229820-9230088(+)$1	268	125	129	12.0000
ucug	chr9:136830852-136831159(-)$1	307	68	72	12.0000
UCUG	chr11:70632397-70632657(-)$1	260	152	156	12.0000
UCUG	chr15:25229057-25229291(+)$1	234	60	64	12.0000
ucug	chr10:21993967-21994323(+)$1	356	43	47	12.0000
ucug	chr17:71664-72032(-)$1	368	36	40	12.0000
ucug	chr10:21993738-21994025(+)$1	287	272	276	12.0000
UCUG	chr19:34882603-34882897(+)$1	294	2	6	12.0000
ucug	chr11:3013160-3013478(-)$1	318	143	147	12.0000
UCUG	chr19:34882161-34882445(+)$1	284	11	15	12.0000
UCUG	chrY:10037676-10037885(+)$1	209	18	22	12.0000
ucug	chr20:8364195-8364493(+)$1	298	35	39	12.0000
ucug	chr14:55115575-55115848(+)$1	273	98	102	12.0000
ucug	chr14:89791430-89791744(-)$1	314	248	252	12.0000
UCUG	chr15:57222256-57222581(+)$1	325	124	128	12.0000
ucug	chr16:10543451-10543741(+)$1	290	17	21	12.0000
ucug	chr11:70504170-70504430(-)$1	260	16	20	12.0000
UCUG	chr18:74144229-74144468(-)$1	239	13	17	12.0000
UCUG	chr2:86669826-86670099(+)$1	273	16	20	12.0000
UCUG	chr1:20234805-20235177(+)$1	372	47	51	12.0000
ucug	chr11:102311441-102311728(-)$1	287	84	88	12.0000
UCUG	chr1:155656104-155656429(-)$1	325	5	9	12.0000
UCUG	chr2:27808952-27809243(+)$1	291	27	31	12.0000
ucug	chr13:51110373-51110606(+)$1	233	51	55	12.0000
UCUG	chr2:102317669-102318075(+)$1	406	47	51	12.0000
ucug	chr2:148721226-148721499(-)$1	273	229	233	12.0000
UCUG	chr3:72495369-72495671(-)$1	302	36	40	12.0000
UCUG	chr20:34252561-34252786(-)$1	225	74	78	12.0000
UCUG	chr6:7127191-7127469(+)$1	278	237	241	12.0000
UCUG	chr11:65211589-65211914(+)$1	325	97	101	12.0000
ucug	chr22:47163603-47163883(+)$1	280	147	151	12.0000
UCUG	chr21:46292064-46292362(-)$1	298	45	49	12.0000
UCUG	chrY:2715839-2716156(+)$1	317	92	96	12.0000
ucug	chr4:107924664-107924908(-)$1	244	74	78	12.0000
UCUG	chrY:2719540-2719867(+)$1	327	150	154	12.0000
UCUG	chr19:34873950-34874224(+)$1	274	24	28	12.0000
UCUG	chr22:29342554-29342853(+)$1	299	33	37	12.0000
ucug	chr2:173439850-173440162(+)$1	312	154	158	12.0000

#otherMatches

#Struct PSSM
gggg	chr7:158369306-158369572(-)$1	266	6	10	12.0000
::cc	chr15:25229679-25229945(+)$1	266	9	13	12.0000
c$$$	chr16:84751067-84751353(+)$1	286	107	111	12.0000
iiii	chr14:39736646-39736899(+)$1	253	203	207	12.0000
""cc	chr14:39835405-39835713(+)$1	308	48	52	12.0000
:::F	chr7:17955143-17955416(-)$1	273	37	41	12.0000
::::	chr16:1361232-1361526(+)$1	294	13	17	12.0000
D{DD	chr1:212932919-212933215(-)$1	296	8	12	12.0000
ddd]	chrY:2716305-2716601(+)$1	296	130	134	12.0000
gggg	chr2:101766291-101766610(-)$1	319	68	72	12.0000
eeee	chr19:34872711-34872951(+)$1	240	44	48	12.0000
FFFF	chr1:91458739-91459003(-)$1	264	6	10	12.0000
KKEE	chr2:61764488-61764767(-)$1	279	66	70	12.0000
:ddd	chr19:16985579-16985829(+)$1	250	12	16	12.0000
eeee	chr11:102285935-102286196(-)$1	261	93	97	12.0000
pppp	chr17:40628529-40628799(+)$1	270	121	125	12.0000
nnne	chr19:57349690-57349910(-)$1	220	163	167	12.0000
"""c	chr14:32088900-32089183(+)$1	283	5	9	12.0000
!ddd	chr15:25229745-25230034(+)$1	289	76	80	12.0000
5ddd	chr5:73935791-73936095(-)$1	304	203	207	12.0000
qqcc	chr2:118853236-118853560(+)$1	324	78	82	12.0000
dddl	chr6:157258063-157258449(+)$1	386	46	50	12.0000
eeee	chr1:20237057-20237316(+)$1	259	71	75	12.0000
DDDD	chr2:118846237-118846531(+)$1	294	148	152	12.0000
ddd[	chr6:167345757-167346060(-)$1	303	246	250	12.0000
ffff	chr12:11268930-11269264(-)$1	334	59	63	12.0000
ddqq	chr7:7234190-7234477(+)$1	287	158	162	12.0000
DKKB	chr11:65192407-65192677(+)$1	270	118	122	12.0000
[ddd	chr19:16985684-16985993(+)$1	309	4	8	12.0000
:::C	chr10:43314069-43314421(+)$1	352	1	5	12.0000
dooo	chr20:60638129-60638408(-)$1	279	38	42	12.0000
dddq	chr3:196997959-196998240(-)$1	281	54	58	12.0000
bbii	chr9:19231072-19231350(+)$1	278	72	76	12.0000
JJJL	chr2:236431035-236431327(+)$1	292	8	12	12.0000
{III	chr2:42425956-42426243(+)$1	287	37	41	12.0000
dddf	chr5:1625058-1625311(-)$1	253	88	92	12.0000
JJJJ	chr17:55365127-55365388(+)$1	261	3	7	12.0000
[a!!	chr20:34250500-34250837(-)$1	337	259	263	12.0000
GGGG	chr6:167345706-167345957(-)$1	251	143	147	12.0000
ssss	chr12:133402597-133402857(-)$1	260	93	97	12.0000
::::	chr6:37918068-37918344(+)$1	276	100	104	12.0000
]ccc	chr9:37184561-37184862(+)$1	301	58	62	12.0000
hhhh	chr18:9229820-9230088(+)$1	268	125	129	12.0000
EEEE	chr9:136830852-136831159(-)$1	307	68	72	12.0000
ffff	chr11:70632397-70632657(-)$1	260	152	156	12.0000
occc	chr15:25229057-25229291(+)$1	234	60	64	12.0000
====	chr10:21993967-21994323(+)$1	356	43	47	12.0000
tttt	chr17:71664-72032(-)$1	368	36	40	12.0000
dddd	chr10:21993738-21994025(+)$1	287	272	276	12.0000
EEEM	chr19:34882603-34882897(+)$1	294	2	6	12.0000
6666	chr11:3013160-3013478(-)$1	318	143	147	12.0000
JJJJ	chr19:34882161-34882445(+)$1	284	11	15	12.0000
[ggg	chrY:10037676-10037885(+)$1	209	18	22	12.0000
!!bb	chr20:8364195-8364493(+)$1	298	35	39	12.0000
cc::	chr14:55115575-55115848(+)$1	273	98	102	12.0000
bb22	chr14:89791430-89791744(-)$1	314	248	252	12.0000
eeeo	chr15:57222256-57222581(+)$1	325	124	128	12.0000
FFFF	chr16:10543451-10543741(+)$1	290	17	21	12.0000
DD::	chr11:70504170-70504430(-)$1	260	16	20	12.0000
JJJJ	chr18:74144229-74144468(-)$1	239	13	17	12.0000
gggg	chr2:86669826-86670099(+)$1	273	16	20	12.0000
eeee	chr1:20234805-20235177(+)$1	372	47	51	12.0000
bb99	chr11:102311441-102311728(-)$1	287	84	88	12.0000
GG{B	chr1:155656104-155656429(-)$1	325	5	9	12.0000
:===	chr2:27808952-27809243(+)$1	291	27	31	12.0000
$$$$	chr13:51110373-51110606(+)$1	233	51	55	12.0000
e[bb	chr2:102317669-102318075(+)$1	406	47	51	12.0000
:DDD	chr2:148721226-148721499(-)$1	273	229	233	12.0000
{EEE	chr3:72495369-72495671(-)$1	302	36	40	12.0000
===D	chr20:34252561-34252786(-)$1	225	74	78	12.0000
bboo	chr6:7127191-7127469(+)$1	278	237	241	12.0000
gggg	chr11:65211589-65211914(+)$1	325	97	101	12.0000
eeee	chr22:47163603-47163883(+)$1	280	147	151	12.0000
ffff	chr21:46292064-46292362(-)$1	298	45	49	12.0000
dddd	chrY:2715839-2716156(+)$1	317	92	96	12.0000
ffff	chr4:107924664-107924908(-)$1	244	74	78	12.0000
c:FF	chrY:2719540-2719867(+)$1	327	150	154	12.0000
ccc!	chr19:34873950-34874224(+)$1	274	24	28	12.0000
EELL	chr22:29342554-29342853(+)$1	299	33	37	12.0000
]bb3	chr2:173439850-173440162(+)$1	312	154	158	12.0000

#DB
((((	chr7:158369306-158369572(-)$1	1	6	10	12.0000
..((	chr15:25229679-25229945(+)$1	1	9	13	12.0000
(...	chr16:84751067-84751353(+)$1	1	107	111	12.0000
))))	chr14:39736646-39736899(+)$1	1	203	207	12.0000
..((	chr14:39835405-39835713(+)$1	1	48	52	12.0000
...(	chr7:17955143-17955416(-)$1	1	37	41	12.0000
....	chr16:1361232-1361526(+)$1	1	13	17	12.0000
(.((	chr1:212932919-212933215(-)$1	1	8	12	12.0000
))).	chrY:2716305-2716601(+)$1	1	130	134	12.0000
((((	chr2:101766291-101766610(-)$1	1	68	72	12.0000
))))	chr19:34872711-34872951(+)$1	1	44	48	12.0000
((((	chr1:91458739-91459003(-)$1	1	6	10	12.0000
..((	chr2:61764488-61764767(-)$1	1	66	70	12.0000
.(((	chr19:16985579-16985829(+)$1	1	12	16	12.0000
))))	chr11:102285935-102286196(-)$1	1	93	97	12.0000
....	chr17:40628529-40628799(+)$1	1	121	125	12.0000
...)	chr19:57349690-57349910(-)$1	1	163	167	12.0000
...(	chr14:32088900-32089183(+)$1	1	5	9	12.0000
.(((	chr15:25229745-25230034(+)$1	1	76	80	12.0000
.)))	chr5:73935791-73936095(-)$1	1	203	207	12.0000
..))	chr2:118853236-118853560(+)$1	1	78	82	12.0000
(((.	chr6:157258063-157258449(+)$1	1	46	50	12.0000
))))	chr1:20237057-20237316(+)$1	1	71	75	12.0000
((((	chr2:118846237-118846531(+)$1	1	148	152	12.0000
(((.	chr6:167345757-167346060(-)$1	1	246	250	12.0000
((((	chr12:11268930-11269264(-)$1	1	59	63	12.0000
((..	chr7:7234190-7234477(+)$1	1	158	162	12.0000
(..(	chr11:65192407-65192677(+)$1	1	118	122	12.0000
.(((	chr19:16985684-16985993(+)$1	1	4	8	12.0000
...(	chr10:43314069-43314421(+)$1	1	1	5	12.0000
(...	chr20:60638129-60638408(-)$1	1	38	42	12.0000
(((.	chr3:196997959-196998240(-)$1	1	54	58	12.0000
))))	chr9:19231072-19231350(+)$1	1	72	76	12.0000
(((.	chr2:236431035-236431327(+)$1	1	8	12	12.0000
.(((	chr2:42425956-42426243(+)$1	1	37	41	12.0000
))))	chr5:1625058-1625311(-)$1	1	88	92	12.0000
((((	chr17:55365127-55365388(+)$1	1	3	7	12.0000
.(..	chr20:34250500-34250837(-)$1	1	259	263	12.0000
))))	chr6:167345706-167345957(-)$1	1	143	147	12.0000
....	chr12:133402597-133402857(-)$1	1	93	97	12.0000
....	chr6:37918068-37918344(+)$1	1	100	104	12.0000
.)))	chr9:37184561-37184862(+)$1	1	58	62	12.0000
((((	chr18:9229820-9230088(+)$1	1	125	129	12.0000
((((	chr9:136830852-136831159(-)$1	1	68	72	12.0000
((((	chr11:70632397-70632657(-)$1	1	152	156	12.0000
.)))	chr15:25229057-25229291(+)$1	1	60	64	12.0000
((((	chr10:21993967-21994323(+)$1	1	43	47	12.0000
....	chr17:71664-72032(-)$1	1	36	40	12.0000
))))	chr10:21993738-21994025(+)$1	1	272	276	12.0000
(((.	chr19:34882603-34882897(+)$1	1	2	6	12.0000
....	chr11:3013160-3013478(-)$1	1	143	147	12.0000
((((	chr19:34882161-34882445(+)$1	1	11	15	12.0000
.(((	chrY:10037676-10037885(+)$1	1	18	22	12.0000
..((	chr20:8364195-8364493(+)$1	1	35	39	12.0000
))..	chr14:55115575-55115848(+)$1	1	98	102	12.0000
))..	chr14:89791430-89791744(-)$1	1	248	252	12.0000
(((.	chr15:57222256-57222581(+)$1	1	124	128	12.0000
((((	chr16:10543451-10543741(+)$1	1	17	21	12.0000
((..	chr11:70504170-70504430(-)$1	1	16	20	12.0000
((((	chr18:74144229-74144468(-)$1	1	13	17	12.0000
((((	chr2:86669826-86670099(+)$1	1	16	20	12.0000
((((	chr1:20234805-20235177(+)$1	1	47	51	12.0000
))..	chr11:102311441-102311728(-)$1	1	84	88	12.0000
((.(	chr1:155656104-155656429(-)$1	1	5	9	12.0000
.(((	chr2:27808952-27809243(+)$1	1	27	31	12.0000
....	chr13:51110373-51110606(+)$1	1	51	55	12.0000
(.((	chr2:102317669-102318075(+)$1	1	47	51	12.0000
.)))	chr2:148721226-148721499(-)$1	1	229	233	12.0000
.(((	chr3:72495369-72495671(-)$1	1	36	40	12.0000
)))(	chr20:34252561-34252786(-)$1	1	74	78	12.0000
((..	chr6:7127191-7127469(+)$1	1	237	241	12.0000
((((	chr11:65211589-65211914(+)$1	1	97	101	12.0000
))))	chr22:47163603-47163883(+)$1	1	147	151	12.0000
((((	chr21:46292064-46292362(-)$1	1	45	49	12.0000
))))	chrY:2715839-2716156(+)$1	1	92	96	12.0000
))))	chr4:107924664-107924908(-)$1	1	74	78	12.0000
).((	chrY:2719540-2719867(+)$1	1	150	154	12.0000
(((.	chr19:34873950-34874224(+)$1	1	24	28	12.0000
((..	chr22:29342554-29342853(+)$1	1	33	37	12.0000
.)).	chr2:173439850-173440162(+)$1	1	154	158	12.0000

#PSSM
U : 0.62	u : 0.37	
C : 0.63	c : 0.36	
U : 0.63	u : 0.36	
G : 0.63	g : 0.36	

#score	960.0
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_UTR_m1_run2.nuc.txt

#NT
GGAGGAGG	chr19:19416531-19416840(-)$1	309	148	156	19.9285
GCAGGAGG	chr9:116999171-116999404(+)$1	233	13	21	15.9285
ggaggagg	chr17:4575372-4575610(-)$1	238	177	185	19.9285
GGAGGAGG	chr19:39936343-39936641(+)$1	298	219	227	19.9285
CGAGGAGG	chr9:139701171-139701431(+)$1	260	141	149	15.7142
GGGGGAGG	chr14:103573691-103573963(+)$1	272	198	206	15.9285
GGAGGCGG	chr2:178129287-178129542(-)$1	255	49	57	16.2142
GCAGGAGG	chr16:9185573-9185883(+)$1	310	182	190	15.9285
GGAUGAGG	chr5:179045083-179045306(-)$1	223	134	142	15.7857
GGAGAAGG	chr6:36562097-36562345(+)$1	248	26	34	15.5714
GGGGGAGG	chr12:6879489-6879719(+)$1	230	14	22	15.9285
GGAGGGGG	chr3:8676878-8677168(-)$1	290	276	284	16.1428
ggagaagg	chr1:16891206-16891510(-)$1	304	157	165	15.5714
GGAGGAGG	chr12:132195581-132195912(+)$1	331	246	254	19.9285
GGAGGAGA	chr3:49377254-49377583(-)$1	329	119	127	15.3571
GGAGGACG	chr12:132414356-132414607(+)$1	251	197	205	15.2142
GGAGGAGG	chr16:2050924-2051300(-)$1	376	168	176	19.9285
GGAGAAGG	chr5:154172202-154172461(+)$1	259	48	56	15.5714
GGCGGAGG	chr15:91499855-91500187(+)$1	332	111	119	15.7857
GGAGGUGG	chr2:113300042-113300392(+)$1	350	255	263	15.8571
GGGGGAGG	chr12:6879453-6879689(+)$1	236	50	58	15.9285
GGAGGACG	chr22:36635414-36635699(-)$1	285	109	117	15.2142
GGAGGAGG	chrX:153362955-153363243(-)$1	288	151	159	19.9285
AGAGGAGG	chr10:735356-735624(-)$1	268	71	79	15.7857
GGCGGAGG	chr17:40306801-40307104(-)$1	303	58	66	15.7857
GGAGGAGG	chr19:10227424-10227706(-)$1	282	55	63	19.9285
GGAGAAGG	chr12:122237710-122237943(-)$1	233	91	99	15.5714
GGAGGAGG	chr1:6269377-6269697(+)$1	320	155	163	19.9285
gggggagg	chr2:159313554-159313833(+)$1	279	46	54	15.9285
GGAGGAGC	chr22:46751242-46751554(+)$1	312	166	174	15.3571
GGAGGCGG	chr16:2059487-2059787(-)$1	300	81	89	16.2142
GGAGGGGG	chr9:117020720-117020954(+)$1	234	191	199	16.1428
GGAGGGGG	chr20:32246446-32246731(-)$1	285	239	247	16.1428
GGAGGAGG	chr11:57558859-57559094(+)$1	235	180	188	19.9285
agaggagg	chr14:73577436-73577683(+)$1	247	161	169	15.7857
GGAGGAGA	chrX:48434210-48434471(+)$1	261	229	237	15.3571
GGAGGCGG	chr2:39664092-39664410(-)$1	318	255	263	16.2142
ggaugagg	chr11:129992100-129992356(+)$1	256	147	155	15.7857
Cgaggagg	chr17:42284720-42284982(-)$1	262	22	30	15.7142
GGAGGCGG	chr14:103571245-103571488(+)$1	243	107	115	16.2142
GGAAGAGG	chr16:89350998-89351304(-)$1	306	132	140	15.7142
ggaggagg	chr15:69075181-69075490(-)$1	309	153	161	19.9285
GGAGGCGG	chr8:145742986-145743304(-)$1	318	293	301	16.2142
GCAGGAGG	chr11:70275118-70275406(+)$1	288	96	104	15.9285
CGAGGAGG	chr15:59179065-59179389(-)$1	324	198	206	15.7142
GGUGGAGG	chr7:56101556-56101897(-)$1	341	118	126	15.9285
GGAGCAGG	chr2:233200422-233200691(+)$1	269	140	148	15.3571
GGAGGAGC	chr16:2570912-2571166(+)$1	254	25	33	15.3571
GGAGGGGG	chr3:132379241-132379637(+)$1	396	236	244	16.1428
UGAGGAGG	chr16:67995375-67995594(-)$1	219	71	79	15.5714
ggaagagg	chr17:48823194-48823438(+)$1	244	14	22	15.7142
GGUGGAGG	chr2:232327844-232328103(-)$1	259	40	48	15.9285
GGAGGCGG	chr5:176981153-176981441(-)$1	288	92	100	16.2142
GCAGGAGG	chr19:10764952-10765262(+)$1	310	161	169	15.9285
GCAGGAGG	chr1:90460586-90460975(+)$1	389	279	287	15.9285
GCAGGAGG	chr9:116999160-116999371(+)$1	211	24	32	15.9285
ggaggagg	chr17:4575410-4575630(-)$1	220	11	19	19.9285
GGAGGGGG	chr1:24125052-24125321(-)$1	269	100	108	16.1428
GGAGGAGG	chr11:118506062-118506344(+)$1	282	125	133	19.9285
ggacgagg	chr16:577709-578023(+)$1	314	291	299	15.5714
GGUGGAGG	chrX:48434153-48434377(+)$1	224	51	59	15.9285
GGAAGAGG	chr6:24775106-24775474(+)$1	368	13	21	15.7142
GGUGGAGG	chr15:49913144-49913444(+)$1	300	198	206	15.9285
GAAGGAGG	chr9:117015066-117015312(+)$1	246	39	47	15.5714
AGAGGAGG	chr2:69969160-69969490(+)$1	330	122	130	15.7857
GGAGGAGG	chr9:100881223-100881578(-)$1	355	91	99	19.9285
AGAGGAGG	chr3:196663763-196664058(-)$1	295	141	149	15.7857
GGAUGAGG	chr2:74659661-74659900(-)$1	239	144	152	15.7857
GUAGGAGG	chr5:64859126-64859469(+)$1	343	256	264	15.5714

#otherMatches

#Struct PSSM
CCKKFFFF	chr16:1411938-1412236(+)$1	298	147	155	15.7857
ffffff22	chr19:19416531-19416840(-)$1	309	148	156	19.9285
b[gggggg	chr9:116999171-116999404(+)$1	233	13	21	15.9285
::::::::	chr17:4575372-4575610(-)$1	238	177	185	19.9285
BB}JJJJJ	chr19:39936343-39936641(+)$1	298	219	227	19.9285
CC}EEEEE	chr9:139701171-139701431(+)$1	260	141	149	15.7142
EEEE}A}H	chr14:103573691-103573963(+)$1	272	198	206	15.9285
====]ccc	chr2:178129287-178129542(-)$1	255	49	57	16.2142
[ddddlll	chr16:9185573-9185883(+)$1	310	182	190	15.9285
0000a22g	chr5:179045083-179045306(-)$1	223	134	142	15.7857
[dddd[ee	chr6:36562097-36562345(+)$1	248	26	34	15.5714
DDJJJJJJ	chr12:6879489-6879719(+)$1	230	14	22	15.9285
IIIIIIII	chr3:8676878-8677168(-)$1	290	276	284	16.1428
::::::::	chr1:16891206-16891510(-)$1	304	157	165	15.5714
BB}EEEEE	chr12:132195581-132195912(+)$1	331	246	254	19.9285
CKKDDDDg	chr3:49377254-49377583(-)$1	329	119	127	15.3571
CC}DDDDc	chr12:132414356-132414607(+)$1	251	197	205	15.2142
FFFFF}DD	chr16:2050924-2051300(-)$1	376	168	176	19.9285
^^^^^^^b	chr5:154172202-154172461(+)$1	259	48	56	15.5714
fffff:DD	chr15:91499855-91500187(+)$1	332	111	119	15.7857
qqqqqqqq	chr2:113300042-113300392(+)$1	350	255	263	15.8571
"eeeeemm	chr12:6879453-6879689(+)$1	236	50	58	15.9285
bFFFFFFg	chr22:36635414-36635699(-)$1	285	109	117	15.2142
dd]bb]bb	chrX:153362955-153363243(-)$1	288	151	159	19.9285
bb]eeeee	chr10:735356-735624(-)$1	268	71	79	15.7857
FFFFFCCC	chr17:40306801-40307104(-)$1	303	58	66	15.7857
dd]bb]bb	chr19:10227424-10227706(-)$1	282	55	63	19.9285
ddd333ff	chr12:122237710-122237943(-)$1	233	91	99	15.5714
qqqbb333	chr1:6269377-6269697(+)$1	320	155	163	19.9285
:eeeee""	chr2:159313554-159313833(+)$1	279	46	54	15.9285
eeGGGGGG	chr22:46751242-46751554(+)$1	312	166	174	15.3571
::::dddd	chr16:2059487-2059787(-)$1	300	81	89	16.2142
CC}AFFFF	chr9:117020720-117020954(+)$1	234	191	199	16.1428
C}A}DDDD	chr20:32246446-32246731(-)$1	285	239	247	16.1428
ZIIIIIII	chr11:57558859-57559094(+)$1	235	180	188	19.9285
mbb333bb	chr14:73577436-73577683(+)$1	247	161	169	15.7857
CCC?????	chrX:48434210-48434471(+)$1	261	229	237	15.3571
ccccc]gg	chr2:39664092-39664410(-)$1	318	255	263	16.2142
ggg333dd	chr11:129992100-129992356(+)$1	256	147	155	15.7857
dnnnnndd	chr17:42284720-42284982(-)$1	262	22	30	15.7142
cc[eeeee	chr14:103571245-103571488(+)$1	243	107	115	16.2142
eee:eeee	chr16:89350998-89351304(-)$1	306	132	140	15.7142
bb[bb"""	chr15:69075181-69075490(-)$1	309	153	161	19.9285
f22ccc]c	chr8:145742986-145743304(-)$1	318	293	301	16.2142
AYYGGGGG	chr11:70275118-70275406(+)$1	288	96	104	15.9285
c"""bboo	chr15:59179065-59179389(-)$1	324	198	206	15.7142
a]gggggg	chr7:56101556-56101897(-)$1	341	118	126	15.9285
IIIGGGGG	chr2:233200422-233200691(+)$1	269	140	148	15.3571
EEEEENNN	chr16:2570912-2571166(+)$1	254	25	33	15.3571
DKKGGGGG	chr3:132379241-132379637(+)$1	396	236	244	16.1428
tttbb22c	chr16:67995375-67995594(-)$1	219	71	79	15.5714
::::::::	chr17:48823194-48823438(+)$1	244	14	22	15.7142
ggggggss	chr2:232327844-232328103(-)$1	259	40	48	15.9285
ggggg[a"	chr5:176981153-176981441(-)$1	288	92	100	16.2142
FFFFF}A}	chr19:10764952-10765262(+)$1	310	161	169	15.9285
EYYIIIII	chr1:90460586-90460975(+)$1	389	279	287	15.9285
d[bb[ccc	chr9:116999160-116999371(+)$1	211	24	32	15.9285
::::::::	chr17:4575410-4575630(-)$1	220	11	19	19.9285
ddddddmm	chr1:24125052-24125321(-)$1	269	100	108	16.1428
DD:dddd[	chr11:118506062-118506344(+)$1	282	125	133	19.9285
rrrrrrre	chr16:577709-578023(+)$1	314	291	299	15.5714
fffff::c	chrX:48434153-48434377(+)$1	224	51	59	15.9285
ccc####c	chr6:24775106-24775474(+)$1	368	13	21	15.7142
]a]a]bb]	chr15:49913144-49913444(+)$1	300	198	206	15.9285
========	chr9:117015066-117015312(+)$1	246	39	47	15.5714
333eeeee	chr2:69969160-69969490(+)$1	330	122	130	15.7857
====22cc	chr9:100881223-100881578(-)$1	355	91	99	19.9285
IIIIIIBB	chr3:196663763-196664058(-)$1	295	141	149	15.7857
d::BB}GG	chr2:74659661-74659900(-)$1	239	144	152	15.7857
bb22====	chr5:64859126-64859469(+)$1	343	256	264	15.5714

#DB
((..((((	chr16:1411938-1412236(+)$1	1	147	155	15.7857
))))))..	chr19:19416531-19416840(-)$1	1	148	156	19.9285
(.((((((	chr9:116999171-116999404(+)$1	1	13	21	15.9285
........	chr17:4575372-4575610(-)$1	1	177	185	19.9285
)).)))))	chr19:39936343-39936641(+)$1	1	219	227	19.9285
)).)))))	chr9:139701171-139701431(+)$1	1	141	149	15.7142
)))).).)	chr14:103573691-103573963(+)$1	1	198	206	15.9285
)))).)))	chr2:178129287-178129542(-)$1	1	49	57	16.2142
.((((...	chr16:9185573-9185883(+)$1	1	182	190	15.9285
....)..)	chr5:179045083-179045306(-)$1	1	134	142	15.7857
.((((.((	chr6:36562097-36562345(+)$1	1	26	34	15.5714
((((((((	chr12:6879489-6879719(+)$1	1	14	22	15.9285
))))))))	chr3:8676878-8677168(-)$1	1	276	284	16.1428
........	chr1:16891206-16891510(-)$1	1	157	165	15.5714
)).)))))	chr12:132195581-132195912(+)$1	1	246	254	19.9285
(..(((((	chr3:49377254-49377583(-)$1	1	119	127	15.3571
)).))))(	chr12:132414356-132414607(+)$1	1	197	205	15.2142
))))).))	chr16:2050924-2051300(-)$1	1	168	176	19.9285
.......)	chr5:154172202-154172461(+)$1	1	48	56	15.5714
))))).((	chr15:91499855-91500187(+)$1	1	111	119	15.7857
........	chr2:113300042-113300392(+)$1	1	255	263	15.8571
.(((((..	chr12:6879453-6879689(+)$1	1	50	58	15.9285
)(((((((	chr22:36635414-36635699(-)$1	1	109	117	15.2142
)).)).))	chrX:153362955-153363243(-)$1	1	151	159	19.9285
)).)))))	chr10:735356-735624(-)$1	1	71	79	15.7857
((((((((	chr17:40306801-40307104(-)$1	1	58	66	15.7857
)).)).))	chr19:10227424-10227706(-)$1	1	55	63	19.9285
)))...))	chr12:122237710-122237943(-)$1	1	91	99	15.5714
...))...	chr1:6269377-6269697(+)$1	1	155	163	19.9285
.(((((..	chr2:159313554-159313833(+)$1	1	46	54	15.9285
))((((((	chr22:46751242-46751554(+)$1	1	166	174	15.3571
....((((	chr16:2059487-2059787(-)$1	1	81	89	16.2142
)).)))))	chr9:117020720-117020954(+)$1	1	191	199	16.1428
).).))))	chr20:32246446-32246731(-)$1	1	239	247	16.1428
.)))))))	chr11:57558859-57559094(+)$1	1	180	188	19.9285
.))...))	chr14:73577436-73577683(+)$1	1	161	169	15.7857
))).....	chrX:48434210-48434471(+)$1	1	229	237	15.3571
))))).))	chr2:39664092-39664410(-)$1	1	255	263	16.2142
)))...))	chr11:129992100-129992356(+)$1	1	147	155	15.7857
(.....))	chr17:42284720-42284982(-)$1	1	22	30	15.7142
((.(((((	chr14:103571245-103571488(+)$1	1	107	115	16.2142
))).((((	chr16:89350998-89351304(-)$1	1	132	140	15.7142
((.((...	chr15:69075181-69075490(-)$1	1	153	161	19.9285
)..))).)	chr8:145742986-145743304(-)$1	1	293	301	16.2142
)..)))))	chr11:70275118-70275406(+)$1	1	96	104	15.9285
(...((..	chr15:59179065-59179389(-)$1	1	198	206	15.7142
).))))))	chr7:56101556-56101897(-)$1	1	118	126	15.9285
((((((((	chr2:233200422-233200691(+)$1	1	140	148	15.3571
(((((...	chr16:2570912-2571166(+)$1	1	25	33	15.3571
(..(((((	chr3:132379241-132379637(+)$1	1	236	244	16.1428
...))..)	chr16:67995375-67995594(-)$1	1	71	79	15.5714
........	chr17:48823194-48823438(+)$1	1	14	22	15.7142
((((((..	chr2:232327844-232328103(-)$1	1	40	48	15.9285
(((((.(.	chr5:176981153-176981441(-)$1	1	92	100	16.2142
))))).).	chr19:10764952-10765262(+)$1	1	161	169	15.9285
)..)))))	chr1:90460586-90460975(+)$1	1	279	287	15.9285
(.((.(((	chr9:116999160-116999371(+)$1	1	24	32	15.9285
........	chr17:4575410-4575630(-)$1	1	11	19	19.9285
((((((..	chr1:24125052-24125321(-)$1	1	100	108	16.1428
((.((((.	chr11:118506062-118506344(+)$1	1	125	133	19.9285
.......)	chr16:577709-578023(+)$1	1	291	299	15.5714
)))))..(	chrX:48434153-48434377(+)$1	1	51	59	15.9285
(((....(	chr6:24775106-24775474(+)$1	1	13	21	15.7142
.).).)).	chr15:49913144-49913444(+)$1	1	198	206	15.9285
((((((((	chr9:117015066-117015312(+)$1	1	39	47	15.5714
...)))))	chr2:69969160-69969490(+)$1	1	122	130	15.7857
))))..))	chr9:100881223-100881578(-)$1	1	91	99	19.9285
))))))))	chr3:196663763-196664058(-)$1	1	141	149	15.7857
)..)).))	chr2:74659661-74659900(-)$1	1	144	152	15.7857
))..))))	chr5:64859126-64859469(+)$1	1	256	264	15.5714

#PSSM
G : 0.77	g : 0.11	C : 0.04	A : 0.04	a : 0.01	U : 0.01	
G : 0.74	g : 0.14	C : 0.08	A : 0.01	U : 0.01	
A : 0.72	a : 0.12	U : 0.05	G : 0.04	C : 0.02	g : 0.01	
G : 0.78	g : 0.10	U : 0.04	A : 0.02	u : 0.01	a : 0.01	c : 0.01	
G : 0.79	g : 0.12	A : 0.04	a : 0.01	C : 0.01	
A : 0.68	a : 0.14	C : 0.08	G : 0.07	U : 0.01	
G : 0.82	g : 0.14	C : 0.02	
G : 0.79	g : 0.14	A : 0.02	C : 0.02	

#score	1159.8571428571418
#seq	70
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_CDS_m2_run2.nuc.txt

#NT
UUUG	chr2:201728764-201729006(-)$1	242	125	129	11.9999
UUUG	chr3:99567289-99567536(+)$1	247	87	91	11.9999
UUUG	chr17:29632050-29632282(+)$1	232	1	5	11.9999
UUUG	chr12:104681010-104681270(+)$1	260	162	166	11.9999
UUUG	chr8:94752668-94752932(-)$1	264	89	93	11.9999
UUUG	chr17:29632112-29632463(+)$1	351	34	38	11.9999
UUUG	chr12:121125100-121125338(+)$1	238	144	148	11.9999
UUUG	chr3:49756505-49756844(+)$1	339	282	286	11.9999
UUUG	chr11:940786-941056(+)$1	270	12	16	11.9999
uuug	chr17:74287954-74288216(-)$1	262	18	22	11.9999
UUUG	chr3:99549300-99549541(+)$1	241	31	35	11.9999
UUUG	chr14:24002712-24003013(+)$1	301	86	90	11.9999
uuug	chr11:940686-940966(+)$1	280	6	10	11.9999
UUUG	chr3:99567523-99567841(+)$1	318	116	120	11.9999
UUUG	chr17:80788037-80788281(+)$1	244	90	94	11.9999
uuug	chr17:74288036-74288310(-)$1	274	22	26	11.9999
UUUG	chr2:186660608-186660931(-)$1	323	29	33	11.9999
UUUG	chr8:94752610-94752863(-)$1	253	20	24	11.9999
UUUG	chr17:74288346-74288606(-)$1	260	15	19	11.9999
UUUG	chr20:30947465-30947735(+)$1	270	61	65	11.9999
UUUG	chr12:31477780-31478002(-)$1	222	6	10	11.9999
UUUG	chr20:30947420-30947665(+)$1	245	13	17	11.9999
UUUG	chr12:50135945-50136257(+)$1	312	109	113	11.9999
UUUG	chr11:9286484-9286849(-)$1	365	287	291	11.9999
UUUG	chr17:74287802-74288027(-)$1	225	39	43	11.9999
UUUG	chr17:74288881-74289131(-)$1	250	30	34	11.9999
UUUG	chr17:74288406-74288672(-)$1	266	21	25	11.9999
UUUG	chr7:6075000-6075263(-)$1	263	117	121	11.9999
UUUG	chr3:99569568-99569897(+)$1	329	49	53	11.9999
UUUG	chr19:56188480-56188734(+)$1	254	18	22	11.9999
UUUG	chr16:48399219-48399570(-)$1	351	65	69	11.9999
UUUG	chr17:74288258-74288504(-)$1	246	6	10	11.9999
UUUG	chr2:27998725-27998979(+)$1	254	44	48	11.9999
UUUG	chr4:52774982-52775246(+)$1	264	95	99	11.9999
UUUG	chr2:3322522-3322750(-)$1	228	38	42	11.9999
UUUG	chr17:80788967-80789215(+)$1	248	12	16	11.9999
UUUG	chr17:74288818-74289081(-)$1	263	10	14	11.9999
UUUG	chr6:32940774-32941007(+)$1	233	83	87	11.9999
UUUG	chr17:29622740-29622984(+)$1	244	34	38	11.9999
UUUG	chr17:74288931-74289173(-)$1	242	13	17	11.9999
UUUG	chr17:74288569-74288819(-)$1	250	48	52	11.9999
UUUG	chr19:57986964-57987250(-)$1	286	108	112	11.9999
UUUG	chr14:39736596-39736838(+)$1	242	58	62	11.9999
UUUG	chr1:1689858-1690096(-)$1	238	7	11	11.9999
UUUG	chr17:29622546-29622792(+)$1	246	31	35	11.9999
UUUG	chr3:99567708-99567970(+)$1	262	74	78	11.9999
UUUG	chr2:201728724-201728964(-)$1	240	83	87	11.9999
UUUG	chr11:66391291-66391539(+)$1	248	3	7	11.9999
UUUG	chr12:104682486-104682742(+)$1	256	19	23	11.9999
UUUG	chr7:6074953-6075200(-)$1	247	54	58	11.9999
UUUG	chr17:80788856-80789150(+)$1	294	16	20	11.9999
UUUG	chr2:97482368-97482640(+)$1	272	194	198	11.9999
UUUG	chr7:141478453-141478703(+)$1	250	84	88	11.9999
UUUG	chr12:27132598-27132880(-)$1	282	2	6	11.9999
UUUG	chr3:99567453-99567697(+)$1	244	186	190	11.9999
UUUG	chr2:201728806-201729067(-)$1	261	2	6	11.9999
UUUG	chr1:91967158-91967408(+)$1	250	56	60	11.9999
uuug	chr17:74288684-74288958(-)$1	274	7	11	11.9999
UUUG	chr2:11721003-11721259(+)$1	256	248	252	11.9999
UUUG	chr8:94752559-94752810(-)$1	251	95	99	11.9999
UUUG	chr3:185538711-185538987(-)$1	276	199	203	11.9999
UUUG	chr17:80789107-80789363(+)$1	256	26	30	11.9999
UUUG	chr17:29632263-29632537(+)$1	274	43	47	11.9999
uuug	chr17:74288199-74288433(-)$1	234	25	29	11.9999
UUUG	chr9:139115446-139115710(-)$1	264	69	73	11.9999
UUUG	chr17:74288472-74288769(-)$1	297	88	92	11.9999
UUUG	chr17:29622109-29622374(+)$1	265	11	15	11.9999
UUUG	chr7:104752861-104753089(-)$1	228	25	29	11.9999
UUUG	chr17:29622328-29622594(+)$1	266	61	65	11.9999
UUUG	chr17:76723594-76723859(-)$1	265	212	216	11.9999
UUUG	chr17:80789584-80789875(+)$1	291	69	73	11.9999
UUUG	chr3:99567146-99567389(+)$1	243	67	71	11.9999
UUUG	chr5:158634782-158635048(-)$1	266	200	204	11.9999
UUUG	chr17:44626328-44626584(-)$1	256	60	64	11.9999
UUUG	chr3:99567350-99567592(+)$1	242	26	30	11.9999
UUUG	chr2:240921484-240921741(-)$1	257	5	9	11.9999
UUUG	chr6:32940753-32940974(+)$1	221	104	108	11.9999
UUUG	chr19:8551019-8551270(+)$1	251	147	151	11.9999

#otherMatches

#Struct PSSM
pppp	chr2:97482449-97482776(+)$1	327	113	117	11.9999
2eee	chr2:201728764-201729006(-)$1	242	125	129	11.9999
dddq	chr3:99567289-99567536(+)$1	247	87	91	11.9999
::::	chr17:29632050-29632282(+)$1	232	1	5	11.9999
gggg	chr12:104681010-104681270(+)$1	260	162	166	11.9999
uudd	chr8:94752668-94752932(-)$1	264	89	93	11.9999
==$$	chr17:29632112-29632463(+)$1	351	34	38	11.9999
###c	chr12:121125100-121125338(+)$1	238	144	148	11.9999
mmmc	chr3:49756505-49756844(+)$1	339	282	286	11.9999
LLLC	chr11:940786-941056(+)$1	270	12	16	11.9999
ee""	chr17:74287954-74288216(-)$1	262	18	22	11.9999
##cc	chr3:99549300-99549541(+)$1	241	31	35	11.9999
mma]	chr14:24002712-24003013(+)$1	301	86	90	11.9999
::::	chr11:940686-940966(+)$1	280	6	10	11.9999
qqqq	chr3:99567523-99567841(+)$1	318	116	120	11.9999
xxxx	chr17:80788037-80788281(+)$1	244	90	94	11.9999
dd[b	chr17:74288036-74288310(-)$1	274	22	26	11.9999
"ccc	chr2:186660608-186660931(-)$1	323	29	33	11.9999
:::f	chr8:94752610-94752863(-)$1	253	20	24	11.9999
hhhh	chr17:74288346-74288606(-)$1	260	15	19	11.9999
5555	chr20:30947465-30947735(+)$1	270	61	65	11.9999
JJJJ	chr12:31477780-31478002(-)$1	222	6	10	11.9999
EE{D	chr20:30947420-30947665(+)$1	245	13	17	11.9999
c]ee	chr12:50135945-50136257(+)$1	312	109	113	11.9999
cc[c	chr11:9286484-9286849(-)$1	365	287	291	11.9999
333e	chr17:74287802-74288027(-)$1	225	39	43	11.9999
ffff	chr17:74288881-74289131(-)$1	250	30	34	11.9999
EEKK	chr17:74288406-74288672(-)$1	266	21	25	11.9999
e[ff	chr7:6075000-6075263(-)$1	263	117	121	11.9999
c###	chr3:99569568-99569897(+)$1	329	49	53	11.9999
hhhh	chr19:56188480-56188734(+)$1	254	18	22	11.9999
e!!f	chr16:48399219-48399570(-)$1	351	65	69	11.9999
DD{B	chr17:74288258-74288504(-)$1	246	6	10	11.9999
hhh:	chr2:27998725-27998979(+)$1	254	44	48	11.9999
nnnn	chr4:52774982-52775246(+)$1	264	95	99	11.9999
::::	chr2:3322522-3322750(-)$1	228	38	42	11.9999
HHH{	chr17:80788967-80789215(+)$1	248	12	16	11.9999
::::	chr17:74288818-74289081(-)$1	263	10	14	11.9999
h:::	chr6:32940774-32941007(+)$1	233	83	87	11.9999
fff[	chr17:29622740-29622984(+)$1	244	34	38	11.9999
e[dd	chr17:74288931-74289173(-)$1	242	13	17	11.9999
oooo	chr17:74288569-74288819(-)$1	250	48	52	11.9999
GGG}	chr19:57986964-57987250(-)$1	286	108	112	11.9999
====	chr14:39736596-39736838(+)$1	242	58	62	11.9999
IIKK	chr1:1689858-1690096(-)$1	238	7	11	11.9999
##cc	chr17:29622546-29622792(+)$1	246	31	35	11.9999
nnnn	chr3:99567708-99567970(+)$1	262	74	78	11.9999
2eee	chr2:201728724-201728964(-)$1	240	83	87	11.9999
eeee	chr11:66391291-66391539(+)$1	248	3	7	11.9999
CCC{	chr12:104682486-104682742(+)$1	256	19	23	11.9999
d[a!	chr7:6074953-6075200(-)$1	247	54	58	11.9999
G::f	chr17:80788856-80789150(+)$1	294	16	20	11.9999
ff]a	chr2:97482368-97482640(+)$1	272	194	198	11.9999
====	chr7:141478453-141478703(+)$1	250	84	88	11.9999
::::	chr12:27132598-27132880(-)$1	282	2	6	11.9999
IIII	chr3:99567453-99567697(+)$1	244	186	190	11.9999
FFFF	chr2:201728806-201729067(-)$1	261	2	6	11.9999
!ddd	chr1:91967158-91967408(+)$1	250	56	60	11.9999
dd[d	chr17:74288684-74288958(-)$1	274	7	11	11.9999
::::	chr2:11721003-11721259(+)$1	256	248	252	11.9999
IIII	chr8:94752559-94752810(-)$1	251	95	99	11.9999
h!!c	chr3:185538711-185538987(-)$1	276	199	203	11.9999
hhhh	chr17:80789107-80789363(+)$1	256	26	30	11.9999
gggg	chr17:29632263-29632537(+)$1	274	43	47	11.9999
c444	chr17:74288199-74288433(-)$1	234	25	29	11.9999
EEEE	chr9:139115446-139115710(-)$1	264	69	73	11.9999
gggg	chr17:74288472-74288769(-)$1	297	88	92	11.9999
hhhh	chr17:29622109-29622374(+)$1	265	11	15	11.9999
fff[	chr7:104752861-104753089(-)$1	228	25	29	11.9999
cc[=	chr17:29622328-29622594(+)$1	266	61	65	11.9999
$ddd	chr17:76723594-76723859(-)$1	265	212	216	11.9999
eee%	chr17:80789584-80789875(+)$1	291	69	73	11.9999
eee$	chr3:99567146-99567389(+)$1	243	67	71	11.9999
EEE}	chr5:158634782-158635048(-)$1	266	200	204	11.9999
d22e	chr17:44626328-44626584(-)$1	256	60	64	11.9999
b]cc	chr3:99567350-99567592(+)$1	242	26	30	11.9999
====	chr2:240921484-240921741(-)$1	257	5	9	11.9999
h:::	chr6:32940753-32940974(+)$1	221	104	108	11.9999
EEEK	chr19:8551019-8551270(+)$1	251	147	151	11.9999

#DB
....	chr2:97482449-97482776(+)$1	1	113	117	11.9999
.)))	chr2:201728764-201729006(-)$1	1	125	129	11.9999
(((.	chr3:99567289-99567536(+)$1	1	87	91	11.9999
....	chr17:29632050-29632282(+)$1	1	1	5	11.9999
((((	chr12:104681010-104681270(+)$1	1	162	166	11.9999
..))	chr8:94752668-94752932(-)$1	1	89	93	11.9999
((..	chr17:29632112-29632463(+)$1	1	34	38	11.9999
...(	chr12:121125100-121125338(+)$1	1	144	148	11.9999
...)	chr3:49756505-49756844(+)$1	1	282	286	11.9999
...(	chr11:940786-941056(+)$1	1	12	16	11.9999
((..	chr17:74287954-74288216(-)$1	1	18	22	11.9999
..((	chr3:99549300-99549541(+)$1	1	31	35	11.9999
..).	chr14:24002712-24003013(+)$1	1	86	90	11.9999
....	chr11:940686-940966(+)$1	1	6	10	11.9999
....	chr3:99567523-99567841(+)$1	1	116	120	11.9999
....	chr17:80788037-80788281(+)$1	1	90	94	11.9999
((.(	chr17:74288036-74288310(-)$1	1	22	26	11.9999
.(((	chr2:186660608-186660931(-)$1	1	29	33	11.9999
...(	chr8:94752610-94752863(-)$1	1	20	24	11.9999
((((	chr17:74288346-74288606(-)$1	1	15	19	11.9999
....	chr20:30947465-30947735(+)$1	1	61	65	11.9999
((((	chr12:31477780-31478002(-)$1	1	6	10	11.9999
((.(	chr20:30947420-30947665(+)$1	1	13	17	11.9999
).))	chr12:50135945-50136257(+)$1	1	109	113	11.9999
((.(	chr11:9286484-9286849(-)$1	1	287	291	11.9999
...)	chr17:74287802-74288027(-)$1	1	39	43	11.9999
((((	chr17:74288881-74289131(-)$1	1	30	34	11.9999
((..	chr17:74288406-74288672(-)$1	1	21	25	11.9999
(.((	chr7:6075000-6075263(-)$1	1	117	121	11.9999
(...	chr3:99569568-99569897(+)$1	1	49	53	11.9999
((((	chr19:56188480-56188734(+)$1	1	18	22	11.9999
(..(	chr16:48399219-48399570(-)$1	1	65	69	11.9999
((.(	chr17:74288258-74288504(-)$1	1	6	10	11.9999
))).	chr2:27998725-27998979(+)$1	1	44	48	11.9999
....	chr4:52774982-52775246(+)$1	1	95	99	11.9999
....	chr2:3322522-3322750(-)$1	1	38	42	11.9999
(((.	chr17:80788967-80789215(+)$1	1	12	16	11.9999
....	chr17:74288818-74289081(-)$1	1	10	14	11.9999
)...	chr6:32940774-32941007(+)$1	1	83	87	11.9999
(((.	chr17:29622740-29622984(+)$1	1	34	38	11.9999
(.((	chr17:74288931-74289173(-)$1	1	13	17	11.9999
....	chr17:74288569-74288819(-)$1	1	48	52	11.9999
))).	chr19:57986964-57987250(-)$1	1	108	112	11.9999
((((	chr14:39736596-39736838(+)$1	1	58	62	11.9999
((..	chr1:1689858-1690096(-)$1	1	7	11	11.9999
..((	chr17:29622546-29622792(+)$1	1	31	35	11.9999
....	chr3:99567708-99567970(+)$1	1	74	78	11.9999
.)))	chr2:201728724-201728964(-)$1	1	83	87	11.9999
((((	chr11:66391291-66391539(+)$1	1	3	7	11.9999
(((.	chr12:104682486-104682742(+)$1	1	19	23	11.9999
(.(.	chr7:6074953-6075200(-)$1	1	54	58	11.9999
(..(	chr17:80788856-80789150(+)$1	1	16	20	11.9999
)).)	chr2:97482368-97482640(+)$1	1	194	198	11.9999
))))	chr7:141478453-141478703(+)$1	1	84	88	11.9999
....	chr12:27132598-27132880(-)$1	1	2	6	11.9999
))))	chr3:99567453-99567697(+)$1	1	186	190	11.9999
((((	chr2:201728806-201729067(-)$1	1	2	6	11.9999
.(((	chr1:91967158-91967408(+)$1	1	56	60	11.9999
((.(	chr17:74288684-74288958(-)$1	1	7	11	11.9999
....	chr2:11721003-11721259(+)$1	1	248	252	11.9999
))))	chr8:94752559-94752810(-)$1	1	95	99	11.9999
(..(	chr3:185538711-185538987(-)$1	1	199	203	11.9999
((((	chr17:80789107-80789363(+)$1	1	26	30	11.9999
((((	chr17:29632263-29632537(+)$1	1	43	47	11.9999
)...	chr17:74288199-74288433(-)$1	1	25	29	11.9999
((((	chr9:139115446-139115710(-)$1	1	69	73	11.9999
((((	chr17:74288472-74288769(-)$1	1	88	92	11.9999
((((	chr17:29622109-29622374(+)$1	1	11	15	11.9999
(((.	chr7:104752861-104753089(-)$1	1	25	29	11.9999
((.(	chr17:29622328-29622594(+)$1	1	61	65	11.9999
.(((	chr17:76723594-76723859(-)$1	1	212	216	11.9999
(((.	chr17:80789584-80789875(+)$1	1	69	73	11.9999
(((.	chr3:99567146-99567389(+)$1	1	67	71	11.9999
))).	chr5:158634782-158635048(-)$1	1	200	204	11.9999
)..)	chr17:44626328-44626584(-)$1	1	60	64	11.9999
).))	chr3:99567350-99567592(+)$1	1	26	30	11.9999
((((	chr2:240921484-240921741(-)$1	1	5	9	11.9999
)...	chr6:32940753-32940974(+)$1	1	104	108	11.9999
(((.	chr19:8551019-8551270(+)$1	1	147	151	11.9999

#PSSM
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
U : 0.93	u : 0.06	
G : 0.93	g : 0.06	

#score	947.9999999999998
#seq	79
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_CDS_m1_run1.nuc.txt

#NT
CUG	chr10:5496794-5497018(+)$1	224	52	55	9.0000
CUG	chrX:39914469-39914721(-)$1	252	20	23	9.0000
CUG	chr22:23603411-23603655(+)$1	244	53	56	9.0000
CUG	chr1:154524101-154524348(-)$1	247	31	34	9.0000
cug	chr3:127292517-127292807(-)$1	290	26	29	9.0000
CUG	chr2:70520638-70520850(-)$1	212	45	48	9.0000
CUG	chr8:145650068-145650316(-)$1	248	24	27	9.0000
cug	chrX:53613731-53614044(-)$1	313	28	31	9.0000
CUG	chr20:35862307-35862540(+)$1	233	27	30	9.0000
CUG	chr2:130911718-130911950(-)$1	232	6	9	9.0000
CUG	chr13:103288641-103288876(+)$1	235	35	38	9.0000
CUG	chr2:176043824-176044096(-)$1	272	73	76	9.0000
CUG	chr22:41735776-41736024(+)$1	248	3	6	9.0000
CUG	chr20:33867185-33867469(-)$1	284	15	18	9.0000
CUG	chr4:859975-860256(-)$1	281	27	30	9.0000
CUG	chr22:21351174-21351393(+)$1	219	3	6	9.0000
CUG	chr7:129756405-129756609(+)$1	204	18	21	9.0000
cug	chr19:11213225-11213481(+)$1	256	31	34	9.0000
cug	chr19:18966576-18966865(+)$1	289	17	20	9.0000
CUG	chr12:54799306-54799549(-)$1	243	17	20	9.0000
CUG	chr6:33668181-33668433(-)$1	252	16	19	9.0000
CUG	chr19:34856191-34856397(+)$1	206	16	19	9.0000
CUG	chr1:54266166-54266477(-)$1	311	27	30	9.0000
CUG	chr8:37993183-37993390(+)$1	207	83	86	9.0000
CUG	chr19:42364814-42365023(+)$1	209	34	37	9.0000
CUG	chr1:155313816-155314075(-)$1	259	48	51	9.0000
CUG	chr16:67226791-67227038(+)$1	247	110	113	9.0000
CUG	chr17:30806293-30806540(+)$1	247	65	68	9.0000
CUG	chr6:126332298-126332541(+)$1	243	60	63	9.0000
CUG	chr6:132792624-132792867(-)$1	243	5	8	9.0000
CUG	chr15:75660297-75660514(-)$1	217	1	4	9.0000
CUG	chr1:32646692-32646977(+)$1	285	62	65	9.0000
CUG	chr5:176894491-176894774(-)$1	283	80	83	9.0000
cug	chr7:101837023-101837326(+)$1	303	19	22	9.0000
CUG	chr11:66133216-66133509(-)$1	293	36	39	9.0000
CUG	chr11:67817620-67817837(+)$1	217	33	36	9.0000
CUG	chr11:57265042-57265326(-)$1	284	8	11	9.0000
CUG	chr17:80020609-80020840(-)$1	231	15	18	9.0000
CUG	chr19:6001629-6001951(-)$1	322	7	10	9.0000
CUG	chr19:17835896-17836182(+)$1	286	0	3	9.0000
CUG	chr8:37974034-37974321(+)$1	287	50	53	9.0000
CUG	chr20:2639257-2639504(-)$1	247	15	18	9.0000
CUG	chr7:158542193-158542440(-)$1	247	2	5	9.0000
CUG	chr5:175816199-175816466(+)$1	267	30	33	9.0000
CUG	chr1:155295087-155295317(+)$1	230	40	43	9.0000
CUG	chr9:131767310-131767553(+)$1	243	54	57	9.0000
CUG	chr11:433207-433414(-)$1	207	15	18	9.0000
CUG	chr8:41574320-41574582(-)$1	262	164	167	9.0000
CUG	chr19:46288705-46288955(-)$1	250	29	32	9.0000
CUG	chr9:131029629-131029837(-)$1	208	42	45	9.0000
CUG	chr11:64956115-64956345(+)$1	230	58	61	9.0000
CUG	chr16:30773895-30774145(+)$1	250	34	37	9.0000
CUG	chrX:53565294-53565554(-)$1	260	33	36	9.0000
CUG	chr12:54802886-54803116(-)$1	230	0	3	9.0000
CUG	chr17:8064967-8065234(-)$1	267	13	16	9.0000
CUG	chr15:90767118-90767387(+)$1	269	94	97	9.0000
CUG	chr19:8551857-8552069(+)$1	212	50	53	9.0000
CUG	chr22:21340084-21340326(+)$1	242	8	11	9.0000
CUG	chr19:10941512-10941771(+)$1	259	2	5	9.0000
CUG	chr12:121878426-121878719(-)$1	293	10	13	9.0000
CUG	chr11:94704391-94704648(-)$1	257	17	20	9.0000
CUG	chr14:20928631-20928914(-)$1	283	16	19	9.0000
CUG	chr5:175815113-175815336(-)$1	223	10	13	9.0000
CUG	chr22:29738122-29738375(-)$1	253	9	12	9.0000
CUG	chr4:53284-53487(+)$1	203	21	24	9.0000
CUG	chr1:154940965-154941197(-)$1	232	61	64	9.0000
CUG	chr22:29191887-29192135(-)$1	248	18	21	9.0000
CUG	chr6:153293949-153294284(-)$1	335	142	145	9.0000
CUG	chr12:123804448-123804703(-)$1	255	26	29	9.0000
CUG	chr2:152266795-152267046(+)$1	251	0	3	9.0000
CUG	chr1:6646744-6646990(+)$1	246	3	6	9.0000
CUG	chr8:38645159-38645411(+)$1	252	35	38	9.0000
CUG	chr20:30955422-30955690(+)$1	268	12	15	9.0000
CUG	chr4:119672971-119673251(-)$1	280	57	60	9.0000
cug	chr7:44610353-44610645(-)$1	292	21	24	9.0000
CUG	chr2:153535752-153535968(-)$1	216	2	5	9.0000
CUG	chr7:73651527-73651791(-)$1	264	21	24	9.0000
CUG	chr5:131630601-131630837(+)$1	236	20	23	9.0000
CUG	chr4:6578346-6578609(+)$1	263	9	12	9.0000
CUG	chrX:48434890-48435140(+)$1	250	53	56	9.0000
CUG	chr17:47004174-47004449(+)$1	275	2	5	9.0000
CUG	chr16:160356-160624(-)$1	268	55	58	9.0000
CUG	chr3:14513557-14513835(+)$1	278	10	13	9.0000
CUG	chr12:49225715-49225963(-)$1	248	1	4	9.0000
cug	chr2:127413780-127414035(+)$1	255	7	10	9.0000
CUG	chr14:100827884-100828146(-)$1	262	27	30	9.0000
CUG	chr11:66039490-66039750(+)$1	260	4	7	9.0000
CUG	chr1:155921566-155921811(-)$1	245	71	74	9.0000
CUG	chr12:122622996-122623254(+)$1	258	2	5	9.0000
CUG	chr1:984119-984389(+)$1	270	139	142	9.0000
CUG	chr15:83680081-83680349(-)$1	268	11	14	9.0000
CUG	chr3:196675435-196675681(-)$1	246	86	89	9.0000
CUG	chr4:103723514-103723818(-)$1	304	122	125	9.0000
CUG	chr9:140081752-140082049(-)$1	297	22	25	9.0000
CUG	chr2:182757285-182757560(+)$1	275	18	21	9.0000
CUG	chr12:58221205-58221502(-)$1	297	20	23	9.0000
CUG	chr1:3746184-3746458(-)$1	274	93	96	9.0000
CUG	chr21:33984272-33984515(-)$1	243	4	7	9.0000
CUG	chr12:118454596-118454842(+)$1	246	13	16	9.0000

#otherMatches

#Struct PSSM
ddd	chr9:33948456-33948727(-)$1	271	101	104	9.0000
llf	chr10:5496794-5497018(+)$1	224	52	55	9.0000
ppp	chrX:39914469-39914721(-)$1	252	20	23	9.0000
eee	chr22:23603411-23603655(+)$1	244	53	56	9.0000
eee	chr1:154524101-154524348(-)$1	247	31	34	9.0000
ccc	chr3:127292517-127292807(-)$1	290	26	29	9.0000
fff	chr2:70520638-70520850(-)$1	212	45	48	9.0000
GGC	chr8:145650068-145650316(-)$1	248	24	27	9.0000
EE=	chrX:53613731-53614044(-)$1	313	28	31	9.0000
E::	chr20:35862307-35862540(+)$1	233	27	30	9.0000
ccc	chr2:130911718-130911950(-)$1	232	6	9	9.0000
ooo	chr13:103288641-103288876(+)$1	235	35	38	9.0000
4cc	chr2:176043824-176044096(-)$1	272	73	76	9.0000
ddd	chr22:41735776-41736024(+)$1	248	3	6	9.0000
===	chr20:33867185-33867469(-)$1	284	15	18	9.0000
rrr	chr4:859975-860256(-)$1	281	27	30	9.0000
III	chr22:21351174-21351393(+)$1	219	3	6	9.0000
hhh	chr7:129756405-129756609(+)$1	204	18	21	9.0000
333	chr19:11213225-11213481(+)$1	256	31	34	9.0000
dd:	chr19:18966576-18966865(+)$1	289	17	20	9.0000
d::	chr12:54799306-54799549(-)$1	243	17	20	9.0000
DDD	chr6:33668181-33668433(-)$1	252	16	19	9.0000
ccc	chr19:34856191-34856397(+)$1	206	16	19	9.0000
:::	chr1:54266166-54266477(-)$1	311	27	30	9.0000
3cc	chr8:37993183-37993390(+)$1	207	83	86	9.0000
bbd	chr19:42364814-42365023(+)$1	209	34	37	9.0000
fff	chr1:155313816-155314075(-)$1	259	48	51	9.0000
c]a	chr16:67226791-67227038(+)$1	247	110	113	9.0000
ddd	chr17:30806293-30806540(+)$1	247	65	68	9.0000
fff	chr6:126332298-126332541(+)$1	243	60	63	9.0000
FFF	chr6:132792624-132792867(-)$1	243	5	8	9.0000
ddd	chr15:75660297-75660514(-)$1	217	1	4	9.0000
ooo	chr1:32646692-32646977(+)$1	285	62	65	9.0000
555	chr5:176894491-176894774(-)$1	283	80	83	9.0000
ccc	chr7:101837023-101837326(+)$1	303	19	22	9.0000
LLJ	chr11:66133216-66133509(-)$1	293	36	39	9.0000
33f	chr11:67817620-67817837(+)$1	217	33	36	9.0000
GGG	chr11:57265042-57265326(-)$1	284	8	11	9.0000
dcc	chr17:80020609-80020840(-)$1	231	15	18	9.0000
FFF	chr19:6001629-6001951(-)$1	322	7	10	9.0000
:CC	chr19:17835896-17836182(+)$1	286	0	3	9.0000
::e	chr8:37974034-37974321(+)$1	287	50	53	9.0000
fff	chr20:2639257-2639504(-)$1	247	15	18	9.0000
DDD	chr7:158542193-158542440(-)$1	247	2	5	9.0000
III	chr5:175816199-175816466(+)$1	267	30	33	9.0000
ggg	chr1:155295087-155295317(+)$1	230	40	43	9.0000
GGG	chr9:131767310-131767553(+)$1	243	54	57	9.0000
:cc	chr11:433207-433414(-)$1	207	15	18	9.0000
eee	chr8:41574320-41574582(-)$1	262	164	167	9.0000
ipp	chr19:46288705-46288955(-)$1	250	29	32	9.0000
{BB	chr9:131029629-131029837(-)$1	208	42	45	9.0000
hhh	chr11:64956115-64956345(+)$1	230	58	61	9.0000
::h	chr16:30773895-30774145(+)$1	250	34	37	9.0000
fff	chrX:53565294-53565554(-)$1	260	33	36	9.0000
::B	chr12:54802886-54803116(-)$1	230	0	3	9.0000
cc[	chr17:8064967-8065234(-)$1	267	13	16	9.0000
nnb	chr15:90767118-90767387(+)$1	269	94	97	9.0000
c!!	chr19:8551857-8552069(+)$1	212	50	53	9.0000
Bdd	chr22:21340084-21340326(+)$1	242	8	11	9.0000
:::	chr19:10941512-10941771(+)$1	259	2	5	9.0000
ooo	chr12:121878426-121878719(-)$1	293	10	13	9.0000
ggg	chr11:94704391-94704648(-)$1	257	17	20	9.0000
[cc	chr14:20928631-20928914(-)$1	283	16	19	9.0000
GGG	chr5:175815113-175815336(-)$1	223	10	13	9.0000
fff	chr22:29738122-29738375(-)$1	253	9	12	9.0000
FFF	chr4:53284-53487(+)$1	203	21	24	9.0000
boo	chr1:154940965-154941197(-)$1	232	61	64	9.0000
ppp	chr22:29191887-29192135(-)$1	248	18	21	9.0000
eel	chr6:153293949-153294284(-)$1	335	142	145	9.0000
JJJ	chr12:123804448-123804703(-)$1	255	26	29	9.0000
GGG	chr2:152266795-152267046(+)$1	251	0	3	9.0000
CCC	chr1:6646744-6646990(+)$1	246	3	6	9.0000
CKK	chr8:38645159-38645411(+)$1	252	35	38	9.0000
EEE	chr20:30955422-30955690(+)$1	268	12	15	9.0000
JJJ	chr4:119672971-119673251(-)$1	280	57	60	9.0000
bb[	chr7:44610353-44610645(-)$1	292	21	24	9.0000
CCN	chr2:153535752-153535968(-)$1	216	2	5	9.0000
c[c	chr7:73651527-73651791(-)$1	264	21	24	9.0000
KKB	chr5:131630601-131630837(+)$1	236	20	23	9.0000
ggg	chr4:6578346-6578609(+)$1	263	9	12	9.0000
ddf	chrX:48434890-48435140(+)$1	250	53	56	9.0000
:GG	chr17:47004174-47004449(+)$1	275	2	5	9.0000
EE{	chr16:160356-160624(-)$1	268	55	58	9.0000
ggg	chr3:14513557-14513835(+)$1	278	10	13	9.0000
cc[	chr12:49225715-49225963(-)$1	248	1	4	9.0000
d[c	chr2:127413780-127414035(+)$1	255	7	10	9.0000
bbn	chr14:100827884-100828146(-)$1	262	27	30	9.0000
::E	chr11:66039490-66039750(+)$1	260	4	7	9.0000
eee	chr1:155921566-155921811(-)$1	245	71	74	9.0000
GGG	chr12:122622996-122623254(+)$1	258	2	5	9.0000
add	chr1:984119-984389(+)$1	270	139	142	9.0000
HHd	chr15:83680081-83680349(-)$1	268	11	14	9.0000
:ff	chr3:196675435-196675681(-)$1	246	86	89	9.0000
hhh	chr4:103723514-103723818(-)$1	304	122	125	9.0000
DDD	chr9:140081752-140082049(-)$1	297	22	25	9.0000
ggg	chr2:182757285-182757560(+)$1	275	18	21	9.0000
III	chr12:58221205-58221502(-)$1	297	20	23	9.0000
cc:	chr1:3746184-3746458(-)$1	274	93	96	9.0000
FFF	chr21:33984272-33984515(-)$1	243	4	7	9.0000
FFF	chr12:118454596-118454842(+)$1	246	13	16	9.0000

#DB
)))	chr9:33948456-33948727(-)$1	1	101	104	9.0000
..)	chr10:5496794-5497018(+)$1	1	52	55	9.0000
...	chrX:39914469-39914721(-)$1	1	20	23	9.0000
(((	chr22:23603411-23603655(+)$1	1	53	56	9.0000
)))	chr1:154524101-154524348(-)$1	1	31	34	9.0000
(((	chr3:127292517-127292807(-)$1	1	26	29	9.0000
(((	chr2:70520638-70520850(-)$1	1	45	48	9.0000
(((	chr8:145650068-145650316(-)$1	1	24	27	9.0000
(((	chrX:53613731-53614044(-)$1	1	28	31	9.0000
(..	chr20:35862307-35862540(+)$1	1	27	30	9.0000
(((	chr2:130911718-130911950(-)$1	1	6	9	9.0000
...	chr13:103288641-103288876(+)$1	1	35	38	9.0000
.))	chr2:176043824-176044096(-)$1	1	73	76	9.0000
(((	chr22:41735776-41736024(+)$1	1	3	6	9.0000
(((	chr20:33867185-33867469(-)$1	1	15	18	9.0000
...	chr4:859975-860256(-)$1	1	27	30	9.0000
(((	chr22:21351174-21351393(+)$1	1	3	6	9.0000
)))	chr7:129756405-129756609(+)$1	1	18	21	9.0000
...	chr19:11213225-11213481(+)$1	1	31	34	9.0000
)).	chr19:18966576-18966865(+)$1	1	17	20	9.0000
)..	chr12:54799306-54799549(-)$1	1	17	20	9.0000
(((	chr6:33668181-33668433(-)$1	1	16	19	9.0000
)))	chr19:34856191-34856397(+)$1	1	16	19	9.0000
...	chr1:54266166-54266477(-)$1	1	27	30	9.0000
.))	chr8:37993183-37993390(+)$1	1	83	86	9.0000
)))	chr19:42364814-42365023(+)$1	1	34	37	9.0000
(((	chr1:155313816-155314075(-)$1	1	48	51	9.0000
).)	chr16:67226791-67227038(+)$1	1	110	113	9.0000
)))	chr17:30806293-30806540(+)$1	1	65	68	9.0000
)))	chr6:126332298-126332541(+)$1	1	60	63	9.0000
(((	chr6:132792624-132792867(-)$1	1	5	8	9.0000
(((	chr15:75660297-75660514(-)$1	1	1	4	9.0000
...	chr1:32646692-32646977(+)$1	1	62	65	9.0000
...	chr5:176894491-176894774(-)$1	1	80	83	9.0000
(((	chr7:101837023-101837326(+)$1	1	19	22	9.0000
..(	chr11:66133216-66133509(-)$1	1	36	39	9.0000
..)	chr11:67817620-67817837(+)$1	1	33	36	9.0000
(((	chr11:57265042-57265326(-)$1	1	8	11	9.0000
)((	chr17:80020609-80020840(-)$1	1	15	18	9.0000
(((	chr19:6001629-6001951(-)$1	1	7	10	9.0000
.((	chr19:17835896-17836182(+)$1	1	0	3	9.0000
..(	chr8:37974034-37974321(+)$1	1	50	53	9.0000
(((	chr20:2639257-2639504(-)$1	1	15	18	9.0000
(((	chr7:158542193-158542440(-)$1	1	2	5	9.0000
(((	chr5:175816199-175816466(+)$1	1	30	33	9.0000
)))	chr1:155295087-155295317(+)$1	1	40	43	9.0000
(((	chr9:131767310-131767553(+)$1	1	54	57	9.0000
.((	chr11:433207-433414(-)$1	1	15	18	9.0000
)))	chr8:41574320-41574582(-)$1	1	164	167	9.0000
(..	chr19:46288705-46288955(-)$1	1	29	32	9.0000
.((	chr9:131029629-131029837(-)$1	1	42	45	9.0000
(((	chr11:64956115-64956345(+)$1	1	58	61	9.0000
..(	chr16:30773895-30774145(+)$1	1	34	37	9.0000
)))	chrX:53565294-53565554(-)$1	1	33	36	9.0000
..(	chr12:54802886-54803116(-)$1	1	0	3	9.0000
((.	chr17:8064967-8065234(-)$1	1	13	16	9.0000
..)	chr15:90767118-90767387(+)$1	1	94	97	9.0000
(..	chr19:8551857-8552069(+)$1	1	50	53	9.0000
(((	chr22:21340084-21340326(+)$1	1	8	11	9.0000
...	chr19:10941512-10941771(+)$1	1	2	5	9.0000
...	chr12:121878426-121878719(-)$1	1	10	13	9.0000
(((	chr11:94704391-94704648(-)$1	1	17	20	9.0000
.((	chr14:20928631-20928914(-)$1	1	16	19	9.0000
(((	chr5:175815113-175815336(-)$1	1	10	13	9.0000
(((	chr22:29738122-29738375(-)$1	1	9	12	9.0000
(((	chr4:53284-53487(+)$1	1	21	24	9.0000
(..	chr1:154940965-154941197(-)$1	1	61	64	9.0000
...	chr22:29191887-29192135(-)$1	1	18	21	9.0000
((.	chr6:153293949-153294284(-)$1	1	142	145	9.0000
(((	chr12:123804448-123804703(-)$1	1	26	29	9.0000
(((	chr2:152266795-152267046(+)$1	1	0	3	9.0000
(((	chr1:6646744-6646990(+)$1	1	3	6	9.0000
(..	chr8:38645159-38645411(+)$1	1	35	38	9.0000
(((	chr20:30955422-30955690(+)$1	1	12	15	9.0000
(((	chr4:119672971-119673251(-)$1	1	57	60	9.0000
((.	chr7:44610353-44610645(-)$1	1	21	24	9.0000
((.	chr2:153535752-153535968(-)$1	1	2	5	9.0000
(.(	chr7:73651527-73651791(-)$1	1	21	24	9.0000
..(	chr5:131630601-131630837(+)$1	1	20	23	9.0000
(((	chr4:6578346-6578609(+)$1	1	9	12	9.0000
))(	chrX:48434890-48435140(+)$1	1	53	56	9.0000
.((	chr17:47004174-47004449(+)$1	1	2	5	9.0000
((.	chr16:160356-160624(-)$1	1	55	58	9.0000
(((	chr3:14513557-14513835(+)$1	1	10	13	9.0000
((.	chr12:49225715-49225963(-)$1	1	1	4	9.0000
(.(	chr2:127413780-127414035(+)$1	1	7	10	9.0000
((.	chr14:100827884-100828146(-)$1	1	27	30	9.0000
..(	chr11:66039490-66039750(+)$1	1	4	7	9.0000
(((	chr1:155921566-155921811(-)$1	1	71	74	9.0000
(((	chr12:122622996-122623254(+)$1	1	2	5	9.0000
(((	chr1:984119-984389(+)$1	1	139	142	9.0000
(((	chr15:83680081-83680349(-)$1	1	11	14	9.0000
.((	chr3:196675435-196675681(-)$1	1	86	89	9.0000
(((	chr4:103723514-103723818(-)$1	1	122	125	9.0000
(((	chr9:140081752-140082049(-)$1	1	22	25	9.0000
(((	chr2:182757285-182757560(+)$1	1	18	21	9.0000
(((	chr12:58221205-58221502(-)$1	1	20	23	9.0000
)).	chr1:3746184-3746458(-)$1	1	93	96	9.0000
(((	chr21:33984272-33984515(-)$1	1	4	7	9.0000
(((	chr12:118454596-118454842(+)$1	1	13	16	9.0000

#PSSM
C : 0.93	c : 0.07	
U : 0.93	u : 0.07	
G : 0.93	g : 0.07	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_CDS_m1_run2.nuc.txt

#NT
CACUCACAACAC	chrM:11174-11378(+)$1	204	83	95	23.0192
UUAUCACAACAC	chrM:3787-4003(+)$1	216	13	25	22.6346
CACUCACAACAC	chrM:11185-11389(+)$1	204	72	84	23.0192
UUAUCACAACAC	chrM:3710-3924(+)$1	214	90	102	22.6346
CACUCACAACAC	chrM:11204-11417(+)$1	213	53	65	23.0192
UUAUCACAACAC	chrM:3701-3906(+)$1	205	99	111	22.6346
CACUCACAACAC	chrM:11197-11399(+)$1	202	60	72	23.0192
UGCCCUCAacac	chr3:45636215-45636473(+)$1	258	47	59	18.5000
CACUCACAACAC	chrM:11178-11385(+)$1	207	79	91	23.0192
UUACCACAACAC	chrM:11977-12179(+)$1	202	14	26	23.4038
UUACCACAACAC	chrM:11952-12155(+)$1	203	39	51	23.4038
UUCCCACAACAC	chrM:7139-7344(+)$1	205	40	52	24.1730
CACUCACAACAC	chrM:11144-11347(+)$1	203	113	125	23.0192
UUAUCACAACAC	chrM:3724-3938(+)$1	214	76	88	22.6346
cacccacagcau	chr21:47613493-47613702(-)$1	209	98	110	16.4807
UUAUCACAACAC	chrM:3667-3882(+)$1	215	133	145	22.6346
UUCCCACAACAC	chrM:7149-7358(+)$1	209	30	42	24.1730
UUACCACAACAC	chrM:11955-12168(+)$1	213	36	48	23.4038
UUACCACAACAC	chrM:11921-12125(+)$1	204	70	82	23.4038
cacccacagcau	chr21:47613477-47613693(-)$1	216	89	101	16.4807
CACUCACAACAC	chrM:11152-11367(+)$1	215	105	117	23.0192
CACUCACAACAC	chrM:11226-11434(+)$1	208	31	43	23.0192
CACUCACAACAC	chrM:11170-11374(+)$1	204	87	99	23.0192
UGCACACCACAC	chr10:70516221-70516428(+)$1	207	82	94	14.9423
UUAUCACAACAC	chrM:3682-3901(+)$1	219	118	130	22.6346
UUAUCACAACAC	chrM:3757-3968(+)$1	211	43	55	22.6346
AACCCUCAACAC	chrM:10481-10693(+)$1	212	129	141	18.3076
UUCCCACAACAC	chrM:7158-7362(+)$1	204	21	33	24.1730
CACUCACAACAC	chrM:11190-11393(+)$1	203	67	79	23.0192
UUAUCACAACAC	chrM:3738-3946(+)$1	208	62	74	22.6346
UUAUCACAACAC	chrM:3649-3867(+)$1	218	151	163	22.6346
UGCACACCACAC	chr10:70516228-70516489(+)$1	261	75	87	14.9423
CACCCGCAACAU	chr21:47612357-47612564(-)$1	207	140	152	16.7692
CACCCGCAACAU	chr21:47612321-47612548(-)$1	227	124	136	16.7692
UUACCACAACAC	chrM:11932-12139(+)$1	207	59	71	23.4038
cacccacagcau	chr21:47612921-47613172(-)$1	251	46	58	16.4807
UUACCACAACAC	chrM:11890-12121(+)$1	231	101	113	23.4038
UUACCACAACAC	chrM:11939-12142(+)$1	203	52	64	23.4038
cacccacagcau	chr21:47613506-47613764(-)$1	258	160	172	16.4807
UUACCACAACAC	chrM:11942-12152(+)$1	210	49	61	23.4038
UUACCACAACAC	chrM:11989-12208(+)$1	219	2	14	23.4038
AACCCUCAACAC	chrM:10533-10740(+)$1	207	77	89	18.3076
UUACCACAACAC	chrM:11970-12172(+)$1	202	21	33	23.4038
CACUCACAACAC	chrM:11217-11426(+)$1	209	40	52	23.0192
UUACCACAACAC	chrM:11968-12170(+)$1	202	23	35	23.4038
CACUCACAACAC	chrM:11245-11453(+)$1	208	12	24	23.0192
CACCCGCAACAU	chr21:47612367-47612619(-)$1	252	195	207	16.7692
AACCCUCAACAC	chrM:10493-10713(+)$1	220	117	129	18.3076
CAACCUCAACAC	chrM:6479-6684(+)$1	205	63	75	19.3653
CACCCGCAACAU	chr21:47612280-47612521(-)$1	241	97	109	16.7692
UUACCACAACAC	chrM:11926-12129(+)$1	203	65	77	23.4038

#otherMatches

#Struct PSSM
C:::::::eeee	chr21:47613470-47613677(-)$1	207	73	85	16.4807
::::::::::::	chrM:11174-11378(+)$1	204	83	95	23.0192
::::::::::::	chrM:3787-4003(+)$1	216	13	25	22.6346
::::::::::::	chrM:11185-11389(+)$1	204	72	84	23.0192
::::::::::::	chrM:3710-3924(+)$1	214	90	102	22.6346
::::::::::::	chrM:11204-11417(+)$1	213	53	65	23.0192
::::::::::::	chrM:3701-3906(+)$1	205	99	111	22.6346
::::::::::::	chrM:11197-11399(+)$1	202	60	72	23.0192
ODDDD:::::::	chr3:45636215-45636473(+)$1	258	47	59	18.5000
::::::::::::	chrM:11178-11385(+)$1	207	79	91	23.0192
HHHH::::::::	chrM:11977-12179(+)$1	202	14	26	23.4038
^^^^^^^^^^^^	chrM:11952-12155(+)$1	203	39	51	23.4038
::::::::::::	chrM:7139-7344(+)$1	205	40	52	24.1730
::::::::::::	chrM:11144-11347(+)$1	203	113	125	23.0192
::::::::::::	chrM:3724-3938(+)$1	214	76	88	22.6346
777ccc::eeee	chr21:47613493-47613702(-)$1	209	98	110	16.4807
::::::::::::	chrM:3667-3882(+)$1	215	133	145	22.6346
::::::::::::	chrM:7149-7358(+)$1	209	30	42	24.1730
^^^^^^^^^^^^	chrM:11955-12168(+)$1	213	36	48	23.4038
^^^^^^^^^^^^	chrM:11921-12125(+)$1	204	70	82	23.4038
777ccc::eeee	chr21:47613477-47613693(-)$1	216	89	101	16.4807
::::::::::::	chrM:11152-11367(+)$1	215	105	117	23.0192
::::::::::::	chrM:11226-11434(+)$1	208	31	43	23.0192
::::::::::::	chrM:11170-11374(+)$1	204	87	99	23.0192
ccc:::::::::	chr10:70516221-70516428(+)$1	207	82	94	14.9423
::::::::::::	chrM:3682-3901(+)$1	219	118	130	22.6346
eeee::::::::	chrM:3757-3968(+)$1	211	43	55	22.6346
::::::::::::	chrM:10481-10693(+)$1	212	129	141	18.3076
::::::::::::	chrM:7158-7362(+)$1	204	21	33	24.1730
::::::::::::	chrM:11190-11393(+)$1	203	67	79	23.0192
::::::::::::	chrM:3738-3946(+)$1	208	62	74	22.6346
::::::::::::	chrM:3649-3867(+)$1	218	151	163	22.6346
ccc:::::::::	chr10:70516228-70516489(+)$1	261	75	87	14.9423
cmmmmccc::::	chr21:47612357-47612564(-)$1	207	140	152	16.7692
cmmmmccc::::	chr21:47612321-47612548(-)$1	227	124	136	16.7692
^^^^^^^^^^^^	chrM:11932-12139(+)$1	207	59	71	23.4038
NCCC::::eeee	chr21:47612921-47613172(-)$1	251	46	58	16.4807
^^^^^^^^^^^^	chrM:11890-12121(+)$1	231	101	113	23.4038
^^^^^^^^^^^^	chrM:11939-12142(+)$1	203	52	64	23.4038
::::::::eeee	chr21:47613506-47613764(-)$1	258	160	172	16.4807
^^^^^^^^^^^^	chrM:11942-12152(+)$1	210	49	61	23.4038
::::::::::::	chrM:11989-12208(+)$1	219	2	14	23.4038
::::::::::::	chrM:10533-10740(+)$1	207	77	89	18.3076
HHHH::::::::	chrM:11970-12172(+)$1	202	21	33	23.4038
::::::::::::	chrM:11217-11426(+)$1	209	40	52	23.0192
^^^^^^^^^^^^	chrM:11968-12170(+)$1	202	23	35	23.4038
::::::::::::	chrM:11245-11453(+)$1	208	12	24	23.0192
DD}BB\\\\\\\	chr21:47612367-47612619(-)$1	252	195	207	16.7692
::::::::::::	chrM:10493-10713(+)$1	220	117	129	18.3076
{BBKKCCC::::	chrM:6479-6684(+)$1	205	63	75	19.3653
dd:::CCC:::D	chr21:47612280-47612521(-)$1	241	97	109	16.7692
^^^^^^^^^^^^	chrM:11926-12129(+)$1	203	65	77	23.4038

#DB
(.......((((	chr21:47613470-47613677(-)$1	1	73	85	16.4807
............	chrM:11174-11378(+)$1	1	83	95	23.0192
............	chrM:3787-4003(+)$1	1	13	25	22.6346
............	chrM:11185-11389(+)$1	1	72	84	23.0192
............	chrM:3710-3924(+)$1	1	90	102	22.6346
............	chrM:11204-11417(+)$1	1	53	65	23.0192
............	chrM:3701-3906(+)$1	1	99	111	22.6346
............	chrM:11197-11399(+)$1	1	60	72	23.0192
.((((.......	chr3:45636215-45636473(+)$1	1	47	59	18.5000
............	chrM:11178-11385(+)$1	1	79	91	23.0192
((((........	chrM:11977-12179(+)$1	1	14	26	23.4038
............	chrM:11952-12155(+)$1	1	39	51	23.4038
............	chrM:7139-7344(+)$1	1	40	52	24.1730
............	chrM:11144-11347(+)$1	1	113	125	23.0192
............	chrM:3724-3938(+)$1	1	76	88	22.6346
...)))..((((	chr21:47613493-47613702(-)$1	1	98	110	16.4807
............	chrM:3667-3882(+)$1	1	133	145	22.6346
............	chrM:7149-7358(+)$1	1	30	42	24.1730
............	chrM:11955-12168(+)$1	1	36	48	23.4038
............	chrM:11921-12125(+)$1	1	70	82	23.4038
...)))..((((	chr21:47613477-47613693(-)$1	1	89	101	16.4807
............	chrM:11152-11367(+)$1	1	105	117	23.0192
............	chrM:11226-11434(+)$1	1	31	43	23.0192
............	chrM:11170-11374(+)$1	1	87	99	23.0192
))).........	chr10:70516221-70516428(+)$1	1	82	94	14.9423
............	chrM:3682-3901(+)$1	1	118	130	22.6346
))))........	chrM:3757-3968(+)$1	1	43	55	22.6346
............	chrM:10481-10693(+)$1	1	129	141	18.3076
............	chrM:7158-7362(+)$1	1	21	33	24.1730
............	chrM:11190-11393(+)$1	1	67	79	23.0192
............	chrM:3738-3946(+)$1	1	62	74	22.6346
............	chrM:3649-3867(+)$1	1	151	163	22.6346
))).........	chr10:70516228-70516489(+)$1	1	75	87	14.9423
(....)))....	chr21:47612357-47612564(-)$1	1	140	152	16.7692
(....)))....	chr21:47612321-47612548(-)$1	1	124	136	16.7692
............	chrM:11932-12139(+)$1	1	59	71	23.4038
.(((....((((	chr21:47612921-47613172(-)$1	1	46	58	16.4807
............	chrM:11890-12121(+)$1	1	101	113	23.4038
............	chrM:11939-12142(+)$1	1	52	64	23.4038
........((((	chr21:47613506-47613764(-)$1	1	160	172	16.4807
............	chrM:11942-12152(+)$1	1	49	61	23.4038
............	chrM:11989-12208(+)$1	1	2	14	23.4038
............	chrM:10533-10740(+)$1	1	77	89	18.3076
((((........	chrM:11970-12172(+)$1	1	21	33	23.4038
............	chrM:11217-11426(+)$1	1	40	52	23.0192
............	chrM:11968-12170(+)$1	1	23	35	23.4038
............	chrM:11245-11453(+)$1	1	12	24	23.0192
)).)).......	chr21:47612367-47612619(-)$1	1	195	207	16.7692
............	chrM:10493-10713(+)$1	1	117	129	18.3076
.((..(((....	chrM:6479-6684(+)$1	1	63	75	19.3653
))...)))...(	chr21:47612280-47612521(-)$1	1	97	109	16.7692
............	chrM:11926-12129(+)$1	1	65	77	23.4038

#PSSM
U : 0.51	C : 0.32	c : 0.09	A : 0.05	
U : 0.46	A : 0.38	a : 0.09	G : 0.05	
C : 0.48	A : 0.42	c : 0.09	
C : 0.46	U : 0.40	c : 0.09	A : 0.03	
C : 0.90	c : 0.09	
A : 0.73	a : 0.09	U : 0.09	G : 0.07	
C : 0.90	c : 0.09	
A : 0.86	a : 0.09	C : 0.03	
A : 0.88	g : 0.09	a : 0.01	
C : 0.88	c : 0.11	
A : 0.88	a : 0.11	
C : 0.80	u : 0.09	U : 0.07	c : 0.01	

#score	1105.4615384615395
#seq	52
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_UTR_m1_run2.nuc.txt

#NT
CGUUUUCUUU	chr17:27047517-27047734(+)$1	217	184	194	18.9999
AUUUUUAUUU	chr11:18425230-18425459(+)$1	229	173	183	18.3333
GGUUUUCUUU	chr11:122929975-122930185(-)$1	210	172	182	18.3333
AUUUUUAUUU	chr11:18425140-18425430(+)$1	290	263	273	18.3333
CUUUUUGUUU	chr11:122929941-122930166(-)$1	225	182	192	16.9999
CUUUUUGUUU	chr11:122929966-122930175(-)$1	209	191	201	16.9999
UUUUUUAUUU	chrX:53221351-53221640(-)$1	289	4	14	20.6666
UGUUUUAUUU	chr11:122929515-122929777(-)$1	262	220	230	22.0000
UGUUUUUCUU	chr11:18426901-18427223(+)$1	322	31	41	15.9999
UGUUUUCUUU	chr6:31508797-31509032(-)$1	235	86	96	21.0000
UGUUUCAUUU	chr6:31802963-31803190(+)$1	227	205	215	18.3333
UGUUUUAUUU	chr12:48176434-48176754(-)$1	320	231	241	22.0000
UGUUCUCUUU	chr11:75111338-75111683(+)$1	345	133	143	16.6666
UCUUUUUUUU	chr11:5269441-5269693(-)$1	252	209	219	17.6666

#otherMatches

#Struct PSSM
qqqqqbb777	chr6:31802990-31803199(+)$1	209	178	188	18.3333
bb::::::::	chr17:27047517-27047734(+)$1	217	184	194	18.9999
ggg####eee	chr11:18425230-18425459(+)$1	229	173	183	18.3333
c]dddd]hhh	chr11:122929975-122930185(-)$1	210	172	182	18.3333
IIIIIIIIDD	chr11:18425140-18425430(+)$1	290	263	273	18.3333
EEEEYYGGGG	chr11:122929941-122930166(-)$1	225	182	192	16.9999
EEEEYYGGGG	chr11:122929966-122930175(-)$1	209	191	201	16.9999
::::::::::	chrX:53221351-53221640(-)$1	289	4	14	20.6666
ooooeeeee:	chr11:122929515-122929777(-)$1	262	220	230	22.0000
oooeeeee::	chr11:18426901-18427223(+)$1	322	31	41	15.9999
TTTTTTTTTT	chr6:31508797-31509032(-)$1	235	86	96	21.0000
BBYYBB:::c	chr6:31802963-31803190(+)$1	227	205	215	18.3333
JJJJJJJJJJ	chr12:48176434-48176754(-)$1	320	231	241	22.0000
[ccc!!eeee	chr11:75111338-75111683(+)$1	345	133	143	16.6666
::::::::::	chr11:5269441-5269693(-)$1	252	209	219	17.6666

#DB
.....))...	chr6:31802990-31803199(+)$1	1	178	188	18.3333
))........	chr17:27047517-27047734(+)$1	1	184	194	18.9999
(((....(((	chr11:18425230-18425459(+)$1	1	173	183	18.3333
).)))).)))	chr11:122929975-122930185(-)$1	1	172	182	18.3333
))))))))))	chr11:18425140-18425430(+)$1	1	263	273	18.3333
))))..))))	chr11:122929941-122930166(-)$1	1	182	192	16.9999
))))..))))	chr11:122929966-122930175(-)$1	1	191	201	16.9999
..........	chrX:53221351-53221640(-)$1	1	4	14	20.6666
....))))).	chr11:122929515-122929777(-)$1	1	220	230	22.0000
...)))))..	chr11:18426901-18427223(+)$1	1	31	41	15.9999
..........	chr6:31508797-31509032(-)$1	1	86	96	21.0000
))..))...(	chr6:31802963-31803190(+)$1	1	205	215	18.3333
))))))))))	chr12:48176434-48176754(-)$1	1	231	241	22.0000
.(((..((((	chr11:75111338-75111683(+)$1	1	133	143	16.6666
..........	chr11:5269441-5269693(-)$1	1	209	219	17.6666

#PSSM
U : 0.60	C : 0.20	A : 0.13	G : 0.06	
G : 0.60	U : 0.33	C : 0.06	
U : 0.99	
U : 0.99	
U : 0.93	C : 0.06	
U : 0.86	C : 0.13	
A : 0.46	C : 0.26	G : 0.13	U : 0.13	
U : 0.93	C : 0.06	
U : 0.99	
U : 0.99	

#score	280.6666666666667
#seq	15
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_UTR_m1_run1.nuc.txt

#NT
GCGG	chr19:18682573-18682820(+)$1	247	8	12	11.9999
gcgg	chr6:86352563-86352827(-)$1	264	67	71	11.9999
GCGG	chr11:118272300-118272522(+)$1	222	14	18	11.9999
GCGG	chr12:96252645-96252923(+)$1	278	91	95	11.9999
GCGG	chr12:111180494-111180746(-)$1	252	36	40	11.9999
GCGG	chr11:63742000-63742245(+)$1	245	178	182	11.9999
GCGG	chr3:40498729-40498955(+)$1	226	54	58	11.9999
GCGG	chr12:6643913-6644128(+)$1	215	122	126	11.9999
GCGG	chr7:102119211-102119453(-)$1	242	44	48	11.9999
GCGG	chr19:40336842-40337096(-)$1	254	7	11	11.9999
GCGG	chr2:170655287-170655538(+)$1	251	121	125	11.9999
GCGG	chr9:35072246-35072534(-)$1	288	57	61	11.9999
GCGG	chr1:26232785-26233010(-)$1	225	2	6	11.9999
GCGG	chr8:126010673-126010976(+)$1	303	2	6	11.9999
GCGG	chr17:7210825-7211170(+)$1	345	33	37	11.9999
GCGG	chr3:23959240-23959465(+)$1	225	1	5	11.9999
GCGG	chr12:120875820-120876105(+)$1	285	12	16	11.9999
GCGG	chr17:56429328-56429653(-)$1	325	4	8	11.9999
GCGG	chr17:41150359-41150589(+)$1	230	33	37	11.9999
GCGG	chr8:30669989-30670286(-)$1	297	7	11	11.9999
GCGG	chr17:26903758-26904015(-)$1	257	42	46	11.9999
GCGG	chr12:49658768-49659070(+)$1	302	8	12	11.9999
GCGG	chr3:23958537-23958766(+)$1	229	113	117	11.9999
GCGG	chr22:24236485-24236756(+)$1	271	18	22	11.9999
GCGG	chr6:10723323-10723574(+)$1	251	106	110	11.9999
GCGG	chr1:205719114-205719404(-)$1	290	61	65	11.9999
GCGG	chr19:49999594-49999824(+)$1	230	107	111	11.9999
GCGG	chr12:56122635-56122890(-)$1	255	11	15	11.9999
GCGG	chr6:44214742-44214991(+)$1	249	22	26	11.9999
GCGG	chr4:39460418-39460633(-)$1	215	187	191	11.9999
GCGG	chr2:27294368-27294613(-)$1	245	2	6	11.9999
GCGG	chr11:8704648-8704852(+)$1	204	40	44	11.9999
GCGG	chr3:129034831-129035064(-)$1	233	7	11	11.9999
GCGG	chr11:122932670-122932931(-)$1	261	23	27	11.9999
GCGG	chr1:111991988-111992304(+)$1	316	92	96	11.9999
GCGG	chr15:78832687-78832980(+)$1	293	73	77	11.9999
GCGG	chr9:128003305-128003571(-)$1	266	18	22	11.9999
GCGG	chrX:153626619-153626835(+)$1	216	86	90	11.9999
GCGG	chrX:77359649-77359902(+)$1	253	23	27	11.9999
GCGG	chr19:39109733-39109997(+)$1	264	13	17	11.9999
GCGG	chr6:88411577-88411847(-)$1	270	103	107	11.9999
GCGG	chr3:128902521-128902787(-)$1	266	9	13	11.9999
GCGG	chr11:63448939-63449226(+)$1	287	60	64	11.9999
GCGG	chr8:125551267-125551581(+)$1	314	44	48	11.9999
GCGG	chr12:56510315-56510532(+)$1	217	44	48	11.9999
GCGG	chr5:85913657-85913915(+)$1	258	210	214	11.9999
GCGG	chr6:24720871-24721156(-)$1	285	17	21	11.9999
GCGG	chr12:111180546-111180789(-)$1	243	79	83	11.9999
GCGG	chr4:53117-53441(+)$1	324	92	96	11.9999
GCGG	chr12:50135255-50135495(+)$1	240	11	15	11.9999
GCGG	chr1:110950151-110950415(-)$1	264	30	34	11.9999
GCGG	chr1:145438402-145438632(+)$1	230	193	197	11.9999
GCGG	chr22:24951875-24952129(+)$1	254	34	38	11.9999
GCGG	chr4:39460409-39460618(-)$1	209	172	176	11.9999
GCGG	chr11:118272322-118272533(+)$1	211	5	9	11.9999
GCGG	chrX:152953455-152953804(+)$1	349	82	86	11.9999
GCGG	chr5:132202239-132202480(+)$1	241	67	71	11.9999
GCGG	chr5:68462855-68463201(+)$1	346	85	89	11.9999
GCGG	chr7:25164717-25164985(-)$1	268	35	39	11.9999
GCGG	chr17:73042918-73043161(-)$1	243	109	113	11.9999
GCGG	chr1:36106924-36107221(-)$1	297	136	140	11.9999
GCGG	chr19:18433730-18433995(-)$1	265	86	90	11.9999
GCGG	chr4:100871265-100871530(-)$1	265	5	9	11.9999
GCGG	chr15:44580970-44581218(+)$1	248	75	79	11.9999
GCGG	chr5:132202459-132202692(+)$1	233	41	45	11.9999
GCGG	chr19:50000350-50000565(+)$1	215	186	190	11.9999
GCGG	chrX:77154866-77155152(+)$1	286	8	12	11.9999
GCGG	chr15:69113078-69113332(-)$1	254	28	32	11.9999
GCGG	chr15:90777004-90777263(-)$1	259	16	20	11.9999
GCGG	chr1:39491924-39492171(+)$1	247	109	113	11.9999
GCGG	chr5:81574042-81574273(-)$1	231	19	23	11.9999
GCGG	chr2:176046283-176046528(-)$1	245	53	57	11.9999
GCGG	chr20:57607210-57607495(-)$1	285	6	10	11.9999
GCGG	chr1:110950106-110950351(-)$1	245	181	185	11.9999
GCGG	chr6:26204757-26205049(+)$1	292	88	92	11.9999
GCGG	chr1:26232779-26232985(-)$1	206	5	9	11.9999
GCGG	chr12:131357028-131357263(+)$1	235	9	13	11.9999
gcgg	chrX:119005747-119006053(+)$1	306	32	36	11.9999
GCGG	chr19:36139135-36139405(+)$1	270	209	213	11.9999
GCGG	chr19:49999624-49999828(+)$1	204	77	81	11.9999
GCGG	chr11:18548268-18548566(-)$1	298	41	45	11.9999
GCGG	chr17:37009849-37010082(-)$1	233	5	9	11.9999
GCGG	chr20:5100422-5100689(-)$1	267	45	49	11.9999
GCGG	chr6:26217077-26217341(+)$1	264	147	151	11.9999
GCGG	chr19:59055725-59056004(+)$1	279	48	52	11.9999
GCGG	chr2:61765242-61765499(-)$1	257	24	28	11.9999
GCGG	chr19:39926463-39926688(-)$1	225	75	79	11.9999
GCGG	chr6:144416512-144416800(-)$1	288	60	64	11.9999
gcgg	chr1:197115494-197115795(-)$1	301	142	146	11.9999

#otherMatches

#Struct PSSM
D{EE	chr8:110346477-110346751(+)$1	274	19	23	11.9999
{JJJ	chr19:18682573-18682820(+)$1	247	8	12	11.9999
cccm	chr6:86352563-86352827(-)$1	264	67	71	11.9999
FF{A	chr11:118272300-118272522(+)$1	222	14	18	11.9999
{EEE	chr12:96252645-96252923(+)$1	278	91	95	11.9999
gggg	chr12:111180494-111180746(-)$1	252	36	40	11.9999
Dccc	chr11:63742000-63742245(+)$1	245	178	182	11.9999
FFFF	chr3:40498729-40498955(+)$1	226	54	58	11.9999
e[a[	chr12:6643913-6644128(+)$1	215	122	126	11.9999
::ii	chr7:102119211-102119453(-)$1	242	44	48	11.9999
LLLB	chr19:40336842-40337096(-)$1	254	7	11	11.9999
eeee	chr2:170655287-170655538(+)$1	251	121	125	11.9999
dddd	chr9:35072246-35072534(-)$1	288	57	61	11.9999
{DDD	chr1:26232785-26233010(-)$1	225	2	6	11.9999
BDDD	chr8:126010673-126010976(+)$1	303	2	6	11.9999
eeee	chr17:7210825-7211170(+)$1	345	33	37	11.9999
EEEE	chr3:23959240-23959465(+)$1	225	1	5	11.9999
ffff	chr12:120875820-120876105(+)$1	285	12	16	11.9999
DDDD	chr17:56429328-56429653(-)$1	325	4	8	11.9999
gggg	chr17:41150359-41150589(+)$1	230	33	37	11.9999
eeee	chr8:30669989-30670286(-)$1	297	7	11	11.9999
cccn	chr17:26903758-26904015(-)$1	257	42	46	11.9999
EEEE	chr12:49658768-49659070(+)$1	302	8	12	11.9999
ddd[	chr3:23958537-23958766(+)$1	229	113	117	11.9999
ffrr	chr22:24236485-24236756(+)$1	271	18	22	11.9999
eeeH	chr6:10723323-10723574(+)$1	251	106	110	11.9999
eeee	chr1:205719114-205719404(-)$1	290	61	65	11.9999
DD:d	chr19:49999594-49999824(+)$1	230	107	111	11.9999
DDDC	chr12:56122635-56122890(-)$1	255	11	15	11.9999
Feee	chr6:44214742-44214991(+)$1	249	22	26	11.9999
eell	chr4:39460418-39460633(-)$1	215	187	191	11.9999
c[a[	chr2:27294368-27294613(-)$1	245	2	6	11.9999
b[dd	chr11:8704648-8704852(+)$1	204	40	44	11.9999
CCCC	chr3:129034831-129035064(-)$1	233	7	11	11.9999
emmm	chr11:122932670-122932931(-)$1	261	23	27	11.9999
{Acc	chr1:111991988-111992304(+)$1	316	92	96	11.9999
ccco	chr15:78832687-78832980(+)$1	293	73	77	11.9999
hhh+	chr9:128003305-128003571(-)$1	266	18	22	11.9999
c[gg	chrX:153626619-153626835(+)$1	216	86	90	11.9999
:bb[	chrX:77359649-77359902(+)$1	253	23	27	11.9999
sddd	chr19:39109733-39109997(+)$1	264	13	17	11.9999
eeCC	chr6:88411577-88411847(-)$1	270	103	107	11.9999
f[ee	chr3:128902521-128902787(-)$1	266	9	13	11.9999
c[dd	chr11:63448939-63449226(+)$1	287	60	64	11.9999
dddd	chr8:125551267-125551581(+)$1	314	44	48	11.9999
e!!e	chr12:56510315-56510532(+)$1	217	44	48	11.9999
oooo	chr5:85913657-85913915(+)$1	258	210	214	11.9999
IIII	chr6:24720871-24721156(-)$1	285	17	21	11.9999
HHHH	chr12:111180546-111180789(-)$1	243	79	83	11.9999
]ddd	chr4:53117-53441(+)$1	324	92	96	11.9999
BB::	chr12:50135255-50135495(+)$1	240	11	15	11.9999
eeee	chr1:110950151-110950415(-)$1	264	30	34	11.9999
::ee	chr1:145438402-145438632(+)$1	230	193	197	11.9999
hhhh	chr22:24951875-24952129(+)$1	254	34	38	11.9999
G:dd	chr4:39460409-39460618(-)$1	209	172	176	11.9999
KEEE	chr11:118272322-118272533(+)$1	211	5	9	11.9999
D{EE	chrX:152953455-152953804(+)$1	349	82	86	11.9999
c]gg	chr5:132202239-132202480(+)$1	241	67	71	11.9999
ffff	chr5:68462855-68463201(+)$1	346	85	89	11.9999
ddmm	chr7:25164717-25164985(-)$1	268	35	39	11.9999
gggg	chr17:73042918-73043161(-)$1	243	109	113	11.9999
IIII	chr1:36106924-36107221(-)$1	297	136	140	11.9999
a]ee	chr19:18433730-18433995(-)$1	265	86	90	11.9999
AAKK	chr4:100871265-100871530(-)$1	265	5	9	11.9999
DDdd	chr15:44580970-44581218(+)$1	248	75	79	11.9999
]ddd	chr5:132202459-132202692(+)$1	233	41	45	11.9999
::EE	chr19:50000350-50000565(+)$1	215	186	190	11.9999
GGGG	chrX:77154866-77155152(+)$1	286	8	12	11.9999
dd[c	chr15:69113078-69113332(-)$1	254	28	32	11.9999
KKGG	chr15:90777004-90777263(-)$1	259	16	20	11.9999
ffff	chr1:39491924-39492171(+)$1	247	109	113	11.9999
dd[b	chr5:81574042-81574273(-)$1	231	19	23	11.9999
hhhh	chr2:176046283-176046528(-)$1	245	53	57	11.9999
bbDD	chr20:57607210-57607495(-)$1	285	6	10	11.9999
==cc	chr1:110950106-110950351(-)$1	245	181	185	11.9999
eeee	chr6:26204757-26205049(+)$1	292	88	92	11.9999
CC:I	chr1:26232779-26232985(-)$1	206	5	9	11.9999
D{DD	chr12:131357028-131357263(+)$1	235	9	13	11.9999
gggg	chrX:119005747-119006053(+)$1	306	32	36	11.9999
CCCe	chr19:36139135-36139405(+)$1	270	209	213	11.9999
DD:d	chr19:49999624-49999828(+)$1	204	77	81	11.9999
ccgg	chr11:18548268-18548566(-)$1	298	41	45	11.9999
EEEE	chr17:37009849-37010082(-)$1	233	5	9	11.9999
FBB{	chr20:5100422-5100689(-)$1	267	45	49	11.9999
ffff	chr6:26217077-26217341(+)$1	264	147	151	11.9999
GGGG	chr19:59055725-59056004(+)$1	279	48	52	11.9999
{A::	chr2:61765242-61765499(-)$1	257	24	28	11.9999
f[cc	chr19:39926463-39926688(-)$1	225	75	79	11.9999
gggg	chr6:144416512-144416800(-)$1	288	60	64	11.9999
!ccc	chr1:197115494-197115795(-)$1	301	142	146	11.9999

#DB
(.((	chr8:110346477-110346751(+)$1	1	19	23	11.9999
.(((	chr19:18682573-18682820(+)$1	1	8	12	11.9999
(((.	chr6:86352563-86352827(-)$1	1	67	71	11.9999
((.(	chr11:118272300-118272522(+)$1	1	14	18	11.9999
.(((	chr12:96252645-96252923(+)$1	1	91	95	11.9999
))))	chr12:111180494-111180746(-)$1	1	36	40	11.9999
)(((	chr11:63742000-63742245(+)$1	1	178	182	11.9999
((((	chr3:40498729-40498955(+)$1	1	54	58	11.9999
(.(.	chr12:6643913-6644128(+)$1	1	122	126	11.9999
..((	chr7:102119211-102119453(-)$1	1	44	48	11.9999
...(	chr19:40336842-40337096(-)$1	1	7	11	11.9999
))))	chr2:170655287-170655538(+)$1	1	121	125	11.9999
((((	chr9:35072246-35072534(-)$1	1	57	61	11.9999
.(((	chr1:26232785-26233010(-)$1	1	2	6	11.9999
((((	chr8:126010673-126010976(+)$1	1	2	6	11.9999
))))	chr17:7210825-7211170(+)$1	1	33	37	11.9999
((((	chr3:23959240-23959465(+)$1	1	1	5	11.9999
((((	chr12:120875820-120876105(+)$1	1	12	16	11.9999
((((	chr17:56429328-56429653(-)$1	1	4	8	11.9999
((((	chr17:41150359-41150589(+)$1	1	33	37	11.9999
((((	chr8:30669989-30670286(-)$1	1	7	11	11.9999
(((.	chr17:26903758-26904015(-)$1	1	42	46	11.9999
((((	chr12:49658768-49659070(+)$1	1	8	12	11.9999
(((.	chr3:23958537-23958766(+)$1	1	113	117	11.9999
((..	chr22:24236485-24236756(+)$1	1	18	22	11.9999
))))	chr6:10723323-10723574(+)$1	1	106	110	11.9999
))))	chr1:205719114-205719404(-)$1	1	61	65	11.9999
((.(	chr19:49999594-49999824(+)$1	1	107	111	11.9999
((((	chr12:56122635-56122890(-)$1	1	11	15	11.9999
((((	chr6:44214742-44214991(+)$1	1	22	26	11.9999
((..	chr4:39460418-39460633(-)$1	1	187	191	11.9999
(.(.	chr2:27294368-27294613(-)$1	1	2	6	11.9999
(.((	chr11:8704648-8704852(+)$1	1	40	44	11.9999
((((	chr3:129034831-129035064(-)$1	1	7	11	11.9999
(...	chr11:122932670-122932931(-)$1	1	23	27	11.9999
.(((	chr1:111991988-111992304(+)$1	1	92	96	11.9999
(((.	chr15:78832687-78832980(+)$1	1	73	77	11.9999
(((.	chr9:128003305-128003571(-)$1	1	18	22	11.9999
(.((	chrX:153626619-153626835(+)$1	1	86	90	11.9999
.((.	chrX:77359649-77359902(+)$1	1	23	27	11.9999
.)))	chr19:39109733-39109997(+)$1	1	13	17	11.9999
))))	chr6:88411577-88411847(-)$1	1	103	107	11.9999
(.((	chr3:128902521-128902787(-)$1	1	9	13	11.9999
(.((	chr11:63448939-63449226(+)$1	1	60	64	11.9999
((((	chr8:125551267-125551581(+)$1	1	44	48	11.9999
(..(	chr12:56510315-56510532(+)$1	1	44	48	11.9999
....	chr5:85913657-85913915(+)$1	1	210	214	11.9999
((((	chr6:24720871-24721156(-)$1	1	17	21	11.9999
))))	chr12:111180546-111180789(-)$1	1	79	83	11.9999
.)))	chr4:53117-53441(+)$1	1	92	96	11.9999
((..	chr12:50135255-50135495(+)$1	1	11	15	11.9999
((((	chr1:110950151-110950415(-)$1	1	30	34	11.9999
..((	chr1:145438402-145438632(+)$1	1	193	197	11.9999
((((	chr22:24951875-24952129(+)$1	1	34	38	11.9999
).((	chr4:39460409-39460618(-)$1	1	172	176	11.9999
.(((	chr11:118272322-118272533(+)$1	1	5	9	11.9999
(.((	chrX:152953455-152953804(+)$1	1	82	86	11.9999
).))	chr5:132202239-132202480(+)$1	1	67	71	11.9999
((((	chr5:68462855-68463201(+)$1	1	85	89	11.9999
((..	chr7:25164717-25164985(-)$1	1	35	39	11.9999
))))	chr17:73042918-73043161(-)$1	1	109	113	11.9999
))))	chr1:36106924-36107221(-)$1	1	136	140	11.9999
).))	chr19:18433730-18433995(-)$1	1	86	90	11.9999
((..	chr4:100871265-100871530(-)$1	1	5	9	11.9999
((((	chr15:44580970-44581218(+)$1	1	75	79	11.9999
.)))	chr5:132202459-132202692(+)$1	1	41	45	11.9999
..))	chr19:50000350-50000565(+)$1	1	186	190	11.9999
((((	chrX:77154866-77155152(+)$1	1	8	12	11.9999
((.(	chr15:69113078-69113332(-)$1	1	28	32	11.9999
..((	chr15:90777004-90777263(-)$1	1	16	20	11.9999
))))	chr1:39491924-39492171(+)$1	1	109	113	11.9999
((.(	chr5:81574042-81574273(-)$1	1	19	23	11.9999
((((	chr2:176046283-176046528(-)$1	1	53	57	11.9999
))((	chr20:57607210-57607495(-)$1	1	6	10	11.9999
))((	chr1:110950106-110950351(-)$1	1	181	185	11.9999
))))	chr6:26204757-26205049(+)$1	1	88	92	11.9999
((.(	chr1:26232779-26232985(-)$1	1	5	9	11.9999
(.((	chr12:131357028-131357263(+)$1	1	9	13	11.9999
((((	chrX:119005747-119006053(+)$1	1	32	36	11.9999
)))(	chr19:36139135-36139405(+)$1	1	209	213	11.9999
((.(	chr19:49999624-49999828(+)$1	1	77	81	11.9999
))((	chr11:18548268-18548566(-)$1	1	41	45	11.9999
((((	chr17:37009849-37010082(-)$1	1	5	9	11.9999
(((.	chr20:5100422-5100689(-)$1	1	45	49	11.9999
((((	chr6:26217077-26217341(+)$1	1	147	151	11.9999
((((	chr19:59055725-59056004(+)$1	1	48	52	11.9999
.(..	chr2:61765242-61765499(-)$1	1	24	28	11.9999
(.((	chr19:39926463-39926688(-)$1	1	75	79	11.9999
((((	chr6:144416512-144416800(-)$1	1	60	64	11.9999
.(((	chr1:197115494-197115795(-)$1	1	142	146	11.9999

#PSSM
G : 0.96	g : 0.03	
C : 0.96	c : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	1079.9999999999995
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_transcript_m3_run1.nuc.txt

#NT
CCU	chr5:60457980-60458378(-)$1	398	14	17	9.0000
CCU	chr11:77790665-77790995(-)$1	330	155	158	9.0000
CCU	chr19:39109732-39109982(+)$1	250	30	33	9.0000
CCU	chr3:160938996-160939311(+)$1	315	1	4	9.0000
CCU	chr16:88878188-88878410(-)$1	222	16	19	9.0000
CCU	chr2:10952756-10953016(-)$1	260	50	53	9.0000
CCU	chr1:110162386-110162662(+)$1	276	85	88	9.0000
CCU	chr17:77751884-77752199(+)$1	315	200	203	9.0000
CCU	chr7:106301236-106301553(-)$1	317	60	63	9.0000
CCU	chr1:948802-949057(+)$1	255	21	24	9.0000
CCU	chr1:109968850-109969091(-)$1	241	28	31	9.0000
CCU	chr20:30795604-30795889(+)$1	285	87	90	9.0000
CCU	chr9:94712292-94712539(-)$1	247	5	8	9.0000
CCU	chr9:134151716-134151984(-)$1	268	49	52	9.0000
CCU	chr8:125551328-125551553(+)$1	225	15	18	9.0000
CCU	chr5:133304123-133304398(-)$1	275	73	76	9.0000
CCU	chr10:126480190-126480439(-)$1	249	187	190	9.0000
CCU	chr12:4763357-4763620(+)$1	263	145	148	9.0000
CCU	chr4:174255321-174255531(-)$1	210	119	122	9.0000
ccU	chr6:143381931-143382274(+)$1	343	77	80	9.0000
CCU	chr4:56502147-56502388(-)$1	241	11	14	9.0000
CCU	chr16:75681372-75681657(-)$1	285	31	34	9.0000
CCU	chr1:6880139-6880411(+)$1	272	95	98	9.0000
CCU	chr2:24298969-24299231(-)$1	262	28	31	9.0000
CCU	chr7:38246944-38247312(+)$1	368	142	145	9.0000
CCU	chr7:43908954-43909205(-)$1	251	0	3	9.0000
CCU	chr17:49230915-49231124(+)$1	209	91	94	9.0000
CCU	chr5:177580632-177580915(-)$1	283	24	27	9.0000
CCU	chr10:99446753-99447070(-)$1	317	1	4	9.0000
CCU	chr16:3074042-3074357(-)$1	315	72	75	9.0000
CCU	chr22:41864027-41864252(-)$1	225	4	7	9.0000
CCU	chr7:10979606-10979851(-)$1	245	8	11	9.0000
CCU	chr22:21984119-21984334(-)$1	215	40	43	9.0000
CCU	chr13:50656268-50656552(+)$1	284	17	20	9.0000
CCU	chr4:140587017-140587332(+)$1	315	41	44	9.0000
CCU	chr22:20748428-20748703(+)$1	275	22	25	9.0000
CCU	chr1:36106842-36107098(-)$1	256	6	9	9.0000
CCU	chr17:73257949-73258165(+)$1	216	4	7	9.0000
CCU	chr1:25664764-25665029(+)$1	265	16	19	9.0000
CCU	chr3:9932358-9932596(+)$1	238	183	186	9.0000
CCU	chr6:109703380-109703662(-)$1	282	44	47	9.0000
CCU	chr21:30445826-30446065(-)$1	239	7	10	9.0000
CCU	chr14:23299156-23299405(+)$1	249	30	33	9.0000
CCU	chr16:4393174-4393393(-)$1	219	14	17	9.0000
CCU	chr6:18264513-18264801(-)$1	288	14	17	9.0000
CCU	chrX:48753940-48754242(-)$1	302	53	56	9.0000
CCU	chr11:61196571-61196851(-)$1	280	29	32	9.0000
CCU	chr11:85779854-85780221(-)$1	367	86	89	9.0000
CCU	chr2:217363497-217363700(+)$1	203	0	3	9.0000
CCU	chr2:183580912-183581311(+)$1	399	31	34	9.0000
CCU	chr1:62902852-62903095(+)$1	243	104	107	9.0000
CCU	chr2:55646795-55647080(-)$1	285	2	5	9.0000
CCU	chr11:66039177-66039429(+)$1	252	14	17	9.0000
CCU	chr19:13067757-13068014(-)$1	257	17	20	9.0000
CCU	chrX:153718681-153718934(-)$1	253	9	12	9.0000
CCU	chr1:162531303-162531577(+)$1	274	62	65	9.0000
CCU	chr12:105380003-105380346(+)$1	343	7	10	9.0000
CCU	chr2:131878405-131878626(+)$1	221	2	5	9.0000
CCU	chr20:58515378-58515692(+)$1	314	4	7	9.0000
CCU	chr7:140086479-140086718(-)$1	239	24	27	9.0000
CCU	chr11:102217871-102218209(+)$1	338	14	17	9.0000
CCU	chr1:159895152-159895386(-)$1	234	6	9	9.0000
CCU	chr7:102715500-102715816(+)$1	316	90	93	9.0000
CCU	chr20:37101376-37101703(+)$1	327	103	106	9.0000
CCU	chr19:5690428-5690677(+)$1	249	32	35	9.0000
CCU	chr12:53645814-53646102(+)$1	288	97	100	9.0000
CCU	chr16:57279133-57279396(+)$1	263	7	10	9.0000
CCU	chr1:68151091-68151322(+)$1	231	62	65	9.0000
CCU	chr18:3450135-3450388(+)$1	253	4	7	9.0000
CCU	chr5:68389794-68390055(+)$1	261	24	27	9.0000
CCU	chr2:219157087-219157354(-)$1	267	16	19	9.0000
CCU	chr6:88411684-88412019(-)$1	335	115	118	9.0000
CCU	chr20:30102155-30102489(+)$1	334	93	96	9.0000
CCU	chr1:226595460-226595785(-)$1	325	58	61	9.0000
CCU	chr17:5342209-5342492(-)$1	283	30	33	9.0000
CCU	chr1:20987611-20987908(-)$1	297	45	48	9.0000
CCU	chr10:12237695-12237973(-)$1	278	30	33	9.0000
CCU	chr9:127624088-127624290(-)$1	202	46	49	9.0000
ccu	chr21:16436962-16437279(-)$1	317	75	78	9.0000
CCU	chr5:112257722-112258047(-)$1	325	80	83	9.0000
CCU	chr17:6544256-6544545(+)$1	289	46	49	9.0000
CCU	chr3:184033175-184033419(+)$1	244	14	17	9.0000
CCU	chr19:39421856-39422084(+)$1	228	26	29	9.0000
CCU	chrX:62570722-62570977(-)$1	255	41	44	9.0000
CCU	chr19:18433749-18433988(-)$1	239	19	22	9.0000
CCU	chr4:57302385-57302591(+)$1	206	30	33	9.0000
CCU	chr15:44829245-44829536(+)$1	291	11	14	9.0000
CCU	chr7:22862293-22862561(-)$1	268	33	36	9.0000
CCU	chr3:15247690-15247975(+)$1	285	34	37	9.0000
CCU	chr19:42720967-42721284(-)$1	317	40	43	9.0000
CCU	chr3:113464865-113465112(-)$1	247	151	154	9.0000
CCU	chr1:116915769-116916026(+)$1	257	220	223	9.0000
ccU	chr18:3012984-3013242(-)$1	258	66	69	9.0000
ccU	chr22:19705913-19706286(+)$1	373	49	52	9.0000

#otherMatches

#Struct PSSM
d::	chr19:45583069-45583386(+)$1	317	77	80	9.0000
DDD	chr5:60457980-60458378(-)$1	398	14	17	9.0000
fdd	chr11:77790665-77790995(-)$1	330	155	158	9.0000
]ff	chr19:39109732-39109982(+)$1	250	30	33	9.0000
CC{	chr3:160938996-160939311(+)$1	315	1	4	9.0000
c!!	chr16:88878188-88878410(-)$1	222	16	19	9.0000
HH:	chr2:10952756-10953016(-)$1	260	50	53	9.0000
eee	chr1:110162386-110162662(+)$1	276	85	88	9.0000
}A}	chr17:77751884-77752199(+)$1	315	200	203	9.0000
fff	chr7:106301236-106301553(-)$1	317	60	63	9.0000
eee	chr1:948802-949057(+)$1	255	21	24	9.0000
ttt	chr1:109968850-109969091(-)$1	241	28	31	9.0000
edd	chr20:30795604-30795889(+)$1	285	87	90	9.0000
BGG	chr9:94712292-94712539(-)$1	247	5	8	9.0000
!au	chr9:134151716-134151984(-)$1	268	49	52	9.0000
EEE	chr8:125551328-125551553(+)$1	225	15	18	9.0000
dcc	chr5:133304123-133304398(-)$1	275	73	76	9.0000
hhh	chr10:126480190-126480439(-)$1	249	187	190	9.0000
[cc	chr12:4763357-4763620(+)$1	263	145	148	9.0000
&&d	chr4:174255321-174255531(-)$1	210	119	122	9.0000
ff8	chr6:143381931-143382274(+)$1	343	77	80	9.0000
D::	chr4:56502147-56502388(-)$1	241	11	14	9.0000
{FF	chr16:75681372-75681657(-)$1	285	31	34	9.0000
eee	chr1:6880139-6880411(+)$1	272	95	98	9.0000
:::	chr2:24298969-24299231(-)$1	262	28	31	9.0000
bbI	chr7:38246944-38247312(+)$1	368	142	145	9.0000
:::	chr7:43908954-43909205(-)$1	251	0	3	9.0000
bb3	chr17:49230915-49231124(+)$1	209	91	94	9.0000
eee	chr5:177580632-177580915(-)$1	283	24	27	9.0000
FFF	chr10:99446753-99447070(-)$1	317	1	4	9.0000
ann	chr16:3074042-3074357(-)$1	315	72	75	9.0000
::G	chr22:41864027-41864252(-)$1	225	4	7	9.0000
iii	chr7:10979606-10979851(-)$1	245	8	11	9.0000
E::	chr22:21984119-21984334(-)$1	215	40	43	9.0000
DDD	chr13:50656268-50656552(+)$1	284	17	20	9.0000
fff	chr4:140587017-140587332(+)$1	315	41	44	9.0000
DDD	chr22:20748428-20748703(+)$1	275	22	25	9.0000
EEE	chr1:36106842-36107098(-)$1	256	6	9	9.0000
III	chr17:73257949-73258165(+)$1	216	4	7	9.0000
HHC	chr1:25664764-25665029(+)$1	265	16	19	9.0000
ADD	chr3:9932358-9932596(+)$1	238	183	186	9.0000
cee	chr6:109703380-109703662(-)$1	282	44	47	9.0000
CCC	chr21:30445826-30446065(-)$1	239	7	10	9.0000
ccc	chr14:23299156-23299405(+)$1	249	30	33	9.0000
C::	chr16:4393174-4393393(-)$1	219	14	17	9.0000
GGG	chr6:18264513-18264801(-)$1	288	14	17	9.0000
"""	chrX:48753940-48754242(-)$1	302	53	56	9.0000
zzz	chr11:61196571-61196851(-)$1	280	29	32	9.0000
eA}	chr11:85779854-85780221(-)$1	367	86	89	9.0000
:::	chr2:217363497-217363700(+)$1	203	0	3	9.0000
nnn	chr2:183580912-183581311(+)$1	399	31	34	9.0000
OOD	chr1:62902852-62903095(+)$1	243	104	107	9.0000
EEE	chr2:55646795-55647080(-)$1	285	2	5	9.0000
fff	chr11:66039177-66039429(+)$1	252	14	17	9.0000
DDD	chr19:13067757-13068014(-)$1	257	17	20	9.0000
b##	chrX:153718681-153718934(-)$1	253	9	12	9.0000
ccc	chr1:162531303-162531577(+)$1	274	62	65	9.0000
FFF	chr12:105380003-105380346(+)$1	343	7	10	9.0000
::e	chr2:131878405-131878626(+)$1	221	2	5	9.0000
EE:	chr20:58515378-58515692(+)$1	314	4	7	9.0000
iii	chr7:140086479-140086718(-)$1	239	24	27	9.0000
BBE	chr11:102217871-102218209(+)$1	338	14	17	9.0000
:::	chr1:159895152-159895386(-)$1	234	6	9	9.0000
bb3	chr7:102715500-102715816(+)$1	316	90	93	9.0000
:ee	chr20:37101376-37101703(+)$1	327	103	106	9.0000
ggg	chr19:5690428-5690677(+)$1	249	32	35	9.0000
III	chr12:53645814-53646102(+)$1	288	97	100	9.0000
!bb	chr16:57279133-57279396(+)$1	263	7	10	9.0000
d::	chr1:68151091-68151322(+)$1	231	62	65	9.0000
EDD	chr18:3450135-3450388(+)$1	253	4	7	9.0000
==r	chr5:68389794-68390055(+)$1	261	24	27	9.0000
DDK	chr2:219157087-219157354(-)$1	267	16	19	9.0000
cc]	chr6:88411684-88412019(-)$1	335	115	118	9.0000
eee	chr20:30102155-30102489(+)$1	334	93	96	9.0000
ff[	chr1:226595460-226595785(-)$1	325	58	61	9.0000
CC{	chr17:5342209-5342492(-)$1	283	30	33	9.0000
FF:	chr1:20987611-20987908(-)$1	297	45	48	9.0000
pbb	chr10:12237695-12237973(-)$1	278	30	33	9.0000
dd!	chr9:127624088-127624290(-)$1	202	46	49	9.0000
fff	chr21:16436962-16437279(-)$1	317	75	78	9.0000
eee	chr5:112257722-112258047(-)$1	325	80	83	9.0000
DDK	chr17:6544256-6544545(+)$1	289	46	49	9.0000
ddd	chr3:184033175-184033419(+)$1	244	14	17	9.0000
bbc	chr19:39421856-39422084(+)$1	228	26	29	9.0000
999	chrX:62570722-62570977(-)$1	255	41	44	9.0000
D::	chr19:18433749-18433988(-)$1	239	19	22	9.0000
xxx	chr4:57302385-57302591(+)$1	206	30	33	9.0000
f""	chr15:44829245-44829536(+)$1	291	11	14	9.0000
ccc	chr7:22862293-22862561(-)$1	268	33	36	9.0000
DDD	chr3:15247690-15247975(+)$1	285	34	37	9.0000
cc]	chr19:42720967-42721284(-)$1	317	40	43	9.0000
EEE	chr3:113464865-113465112(-)$1	247	151	154	9.0000
GGC	chr1:116915769-116916026(+)$1	257	220	223	9.0000
$$$	chr18:3012984-3013242(-)$1	258	66	69	9.0000
F{C	chr22:19705913-19706286(+)$1	373	49	52	9.0000

#DB
)..	chr19:45583069-45583386(+)$1	1	77	80	9.0000
(((	chr5:60457980-60458378(-)$1	1	14	17	9.0000
(((	chr11:77790665-77790995(-)$1	1	155	158	9.0000
.))	chr19:39109732-39109982(+)$1	1	30	33	9.0000
((.	chr3:160938996-160939311(+)$1	1	1	4	9.0000
(..	chr16:88878188-88878410(-)$1	1	16	19	9.0000
((.	chr2:10952756-10953016(-)$1	1	50	53	9.0000
)))	chr1:110162386-110162662(+)$1	1	85	88	9.0000
.).	chr17:77751884-77752199(+)$1	1	200	203	9.0000
(((	chr7:106301236-106301553(-)$1	1	60	63	9.0000
(((	chr1:948802-949057(+)$1	1	21	24	9.0000
...	chr1:109968850-109969091(-)$1	1	28	31	9.0000
)))	chr20:30795604-30795889(+)$1	1	87	90	9.0000
(((	chr9:94712292-94712539(-)$1	1	5	8	9.0000
.(.	chr9:134151716-134151984(-)$1	1	49	52	9.0000
(((	chr8:125551328-125551553(+)$1	1	15	18	9.0000
(((	chr5:133304123-133304398(-)$1	1	73	76	9.0000
)))	chr10:126480190-126480439(-)$1	1	187	190	9.0000
.((	chr12:4763357-4763620(+)$1	1	145	148	9.0000
..(	chr4:174255321-174255531(-)$1	1	119	122	9.0000
)).	chr6:143381931-143382274(+)$1	1	77	80	9.0000
(..	chr4:56502147-56502388(-)$1	1	11	14	9.0000
.((	chr16:75681372-75681657(-)$1	1	31	34	9.0000
)))	chr1:6880139-6880411(+)$1	1	95	98	9.0000
...	chr2:24298969-24299231(-)$1	1	28	31	9.0000
)))	chr7:38246944-38247312(+)$1	1	142	145	9.0000
...	chr7:43908954-43909205(-)$1	1	0	3	9.0000
)).	chr17:49230915-49231124(+)$1	1	91	94	9.0000
(((	chr5:177580632-177580915(-)$1	1	24	27	9.0000
(((	chr10:99446753-99447070(-)$1	1	1	4	9.0000
(..	chr16:3074042-3074357(-)$1	1	72	75	9.0000
..(	chr22:41864027-41864252(-)$1	1	4	7	9.0000
(((	chr7:10979606-10979851(-)$1	1	8	11	9.0000
(..	chr22:21984119-21984334(-)$1	1	40	43	9.0000
(((	chr13:50656268-50656552(+)$1	1	17	20	9.0000
)))	chr4:140587017-140587332(+)$1	1	41	44	9.0000
(((	chr22:20748428-20748703(+)$1	1	22	25	9.0000
(((	chr1:36106842-36107098(-)$1	1	6	9	9.0000
(((	chr17:73257949-73258165(+)$1	1	4	7	9.0000
(((	chr1:25664764-25665029(+)$1	1	16	19	9.0000
)))	chr3:9932358-9932596(+)$1	1	183	186	9.0000
)))	chr6:109703380-109703662(-)$1	1	44	47	9.0000
(((	chr21:30445826-30446065(-)$1	1	7	10	9.0000
(((	chr14:23299156-23299405(+)$1	1	30	33	9.0000
(..	chr16:4393174-4393393(-)$1	1	14	17	9.0000
(((	chr6:18264513-18264801(-)$1	1	14	17	9.0000
...	chrX:48753940-48754242(-)$1	1	53	56	9.0000
...	chr11:61196571-61196851(-)$1	1	29	32	9.0000
)).	chr11:85779854-85780221(-)$1	1	86	89	9.0000
...	chr2:217363497-217363700(+)$1	1	0	3	9.0000
...	chr2:183580912-183581311(+)$1	1	31	34	9.0000
..(	chr1:62902852-62903095(+)$1	1	104	107	9.0000
(((	chr2:55646795-55647080(-)$1	1	2	5	9.0000
(((	chr11:66039177-66039429(+)$1	1	14	17	9.0000
(((	chr19:13067757-13068014(-)$1	1	17	20	9.0000
(..	chrX:153718681-153718934(-)$1	1	9	12	9.0000
)))	chr1:162531303-162531577(+)$1	1	62	65	9.0000
(((	chr12:105380003-105380346(+)$1	1	7	10	9.0000
..(	chr2:131878405-131878626(+)$1	1	2	5	9.0000
((.	chr20:58515378-58515692(+)$1	1	4	7	9.0000
(((	chr7:140086479-140086718(-)$1	1	24	27	9.0000
(((	chr11:102217871-102218209(+)$1	1	14	17	9.0000
...	chr1:159895152-159895386(-)$1	1	6	9	9.0000
)).	chr7:102715500-102715816(+)$1	1	90	93	9.0000
.((	chr20:37101376-37101703(+)$1	1	103	106	9.0000
)))	chr19:5690428-5690677(+)$1	1	32	35	9.0000
)))	chr12:53645814-53646102(+)$1	1	97	100	9.0000
.((	chr16:57279133-57279396(+)$1	1	7	10	9.0000
)..	chr1:68151091-68151322(+)$1	1	62	65	9.0000
(((	chr18:3450135-3450388(+)$1	1	4	7	9.0000
((.	chr5:68389794-68390055(+)$1	1	24	27	9.0000
((.	chr2:219157087-219157354(-)$1	1	16	19	9.0000
)).	chr6:88411684-88412019(-)$1	1	115	118	9.0000
(((	chr20:30102155-30102489(+)$1	1	93	96	9.0000
((.	chr1:226595460-226595785(-)$1	1	58	61	9.0000
((.	chr17:5342209-5342492(-)$1	1	30	33	9.0000
((.	chr1:20987611-20987908(-)$1	1	45	48	9.0000
.))	chr10:12237695-12237973(-)$1	1	30	33	9.0000
((.	chr9:127624088-127624290(-)$1	1	46	49	9.0000
(((	chr21:16436962-16437279(-)$1	1	75	78	9.0000
)))	chr5:112257722-112258047(-)$1	1	80	83	9.0000
((.	chr17:6544256-6544545(+)$1	1	46	49	9.0000
(((	chr3:184033175-184033419(+)$1	1	14	17	9.0000
)))	chr19:39421856-39422084(+)$1	1	26	29	9.0000
...	chrX:62570722-62570977(-)$1	1	41	44	9.0000
(..	chr19:18433749-18433988(-)$1	1	19	22	9.0000
...	chr4:57302385-57302591(+)$1	1	30	33	9.0000
(..	chr15:44829245-44829536(+)$1	1	11	14	9.0000
)))	chr7:22862293-22862561(-)$1	1	33	36	9.0000
(((	chr3:15247690-15247975(+)$1	1	34	37	9.0000
)).	chr19:42720967-42721284(-)$1	1	40	43	9.0000
)))	chr3:113464865-113465112(-)$1	1	151	154	9.0000
)))	chr1:116915769-116916026(+)$1	1	220	223	9.0000
...	chr18:3012984-3013242(-)$1	1	66	69	9.0000
(.(	chr22:19705913-19706286(+)$1	1	49	52	9.0000

#PSSM
C : 0.95	c : 0.04	
C : 0.95	c : 0.04	
U : 0.98	u : 0.01	

#score	855.0000000000002
#seq	95
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_UTR_m3_run1.nuc.txt

#NT
UCCU	chr17:57737842-57738049(+)$1	207	192	196	11.9999
UCCU	chr17:80014668-80014902(+)$1	234	48	52	11.9999
UCCU	chr19:42375318-42375544(+)$1	226	166	170	11.9999
UCCU	chr14:103987660-103987869(-)$1	209	77	81	11.9999
UCCU	chr5:140956979-140957223(-)$1	244	40	44	11.9999
UCCU	chr11:61077695-61077991(-)$1	296	15	19	11.9999
UCCU	chr14:35782124-35782363(+)$1	239	17	21	11.9999
UCCU	chrX:153236967-153237206(-)$1	239	44	48	11.9999
UCCU	chr18:55274774-55274999(-)$1	225	34	38	11.9999
UCCU	chr16:22295192-22295504(+)$1	312	288	292	11.9999
UCCU	chr3:48641569-48641843(-)$1	274	54	58	11.9999
UCCU	chr6:36936179-36936417(-)$1	238	123	127	11.9999
UCCU	chr17:48474584-48474833(-)$1	249	103	107	11.9999
UCCU	chr1:12072196-12072422(+)$1	226	172	176	11.9999
UCCU	chr1:156104204-156104419(+)$1	215	209	213	11.9999
UCCU	chr19:36641060-36641329(+)$1	269	206	210	11.9999
UCCU	chr14:24567311-24567561(+)$1	250	76	80	11.9999
UCCU	chr12:57624485-57624798(+)$1	313	88	92	11.9999
UCCU	chr19:56174870-56175116(+)$1	246	32	36	11.9999
UCCU	chr17:18155717-18155971(-)$1	254	124	128	11.9999
UCCU	chr5:33460957-33461225(+)$1	268	74	78	11.9999
UCCU	chr17:57738885-57739104(+)$1	219	9	13	11.9999
UCCU	chr3:184018078-184018302(+)$1	224	195	199	11.9999
UCCU	chr16:28855694-28855908(-)$1	214	14	18	11.9999
UCCU	chr20:33867703-33867990(-)$1	287	219	223	11.9999
UCCU	chr9:75531735-75532010(-)$1	275	131	135	11.9999
UCCU	chr3:184039283-184039549(+)$1	266	42	46	11.9999
UCCU	chr3:184041969-184042236(+)$1	267	206	210	11.9999
UCCU	chr16:1741743-1742079(+)$1	336	4	8	11.9999
UCCU	chr19:49118528-49118799(-)$1	271	29	33	11.9999
UCCU	chr5:118809560-118809809(+)$1	249	83	87	11.9999
UCCU	chr8:101734058-101734283(-)$1	225	138	142	11.9999
UCCU	chr20:57470577-57470799(+)$1	222	54	58	11.9999
UCCU	chr9:95021099-95021376(-)$1	277	167	171	11.9999
UCCU	chr17:7481047-7481275(+)$1	228	25	29	11.9999
UCCU	chr3:52020333-52020557(+)$1	224	66	70	11.9999
UCCU	chr17:45199709-45199992(-)$1	283	91	95	11.9999
UCCU	chr19:56185513-56185779(+)$1	266	245	249	11.9999
UCCU	chr15:72500879-72501191(-)$1	312	26	30	11.9999
UCCU	chr12:57058051-57058306(-)$1	255	115	119	11.9999
UCCU	chr6:43517529-43517752(-)$1	223	65	69	11.9999
UCCU	chr17:46993393-46993650(+)$1	257	24	28	11.9999
uccu	chr17:40927315-40927586(+)$1	271	9	13	11.9999
UCCU	chr19:48374599-48374863(-)$1	264	124	128	11.9999
UCCU	chr3:49720183-49720453(+)$1	270	18	22	11.9999
UCCU	chr3:184048953-184049217(+)$1	264	49	53	11.9999
UCCU	chr11:18424287-18424532(+)$1	245	86	90	11.9999
UCCU	chr3:184049162-184049388(+)$1	226	50	54	11.9999
UCCU	chr11:755791-756088(+)$1	297	0	4	11.9999
UCCU	chr3:127325476-127325754(+)$1	278	35	39	11.9999
UCCU	chr13:98641215-98641513(+)$1	298	41	45	11.9999
UCCU	chr7:94295425-94295642(+)$1	217	120	124	11.9999
UCCU	chr12:56506601-56506926(+)$1	325	99	103	11.9999
UCCU	chr3:184052709-184053017(+)$1	308	187	191	11.9999
UCCU	chr11:64979262-64979541(+)$1	279	56	60	11.9999
UCCU	chr12:53295729-53295956(-)$1	227	39	43	11.9999
UCCU	chr5:137909656-137909871(-)$1	215	4	8	11.9999
UCCU	chr2:85823844-85824152(+)$1	308	31	35	11.9999
UCCU	chr11:47444389-47444623(-)$1	234	72	76	11.9999
UCCU	chr15:72491910-72492168(-)$1	258	63	67	11.9999
UCCU	chr10:103917108-103917374(+)$1	266	107	111	11.9999
UCCU	chr10:103918914-103919163(+)$1	249	3	7	11.9999
UCCU	chr17:2593764-2594021(-)$1	257	237	241	11.9999
UCCU	chr16:3727510-3727758(-)$1	248	103	107	11.9999
UCCU	chr3:184044600-184044843(+)$1	243	179	183	11.9999
UCCU	chr14:77935319-77935555(+)$1	236	182	186	11.9999
UCCU	chr15:72500860-72501076(-)$1	216	48	52	11.9999
UCCU	chr6:36075131-36075426(+)$1	295	75	79	11.9999
UCCU	chr15:72498977-72499201(-)$1	224	47	51	11.9999
UCCU	chr2:96852315-96852582(-)$1	267	58	62	11.9999
UCCU	chr12:6979510-6979735(+)$1	225	60	64	11.9999

#otherMatches

#Struct PSSM
IIII	chr5:150510725-150510949(-)$1	224	83	87	11.9999
GG::	chr17:57737842-57738049(+)$1	207	192	196	11.9999
DDDD	chr17:80014668-80014902(+)$1	234	48	52	11.9999
ccc[	chr19:42375318-42375544(+)$1	226	166	170	11.9999
eeee	chr14:103987660-103987869(-)$1	209	77	81	11.9999
oooo	chr5:140956979-140957223(-)$1	244	40	44	11.9999
####	chr11:61077695-61077991(-)$1	296	15	19	11.9999
Gggg	chr14:35782124-35782363(+)$1	239	17	21	11.9999
22ee	chrX:153236967-153237206(-)$1	239	44	48	11.9999
::::	chr18:55274774-55274999(-)$1	225	34	38	11.9999
ffff	chr16:22295192-22295504(+)$1	312	288	292	11.9999
gggg	chr3:48641569-48641843(-)$1	274	54	58	11.9999
33ee	chr6:36936179-36936417(-)$1	238	123	127	11.9999
::::	chr17:48474584-48474833(-)$1	249	103	107	11.9999
ccc]	chr1:12072196-12072422(+)$1	226	172	176	11.9999
h]cc	chr1:156104204-156104419(+)$1	215	209	213	11.9999
ffff	chr19:36641060-36641329(+)$1	269	206	210	11.9999
eeee	chr14:24567311-24567561(+)$1	250	76	80	11.9999
##ff	chr12:57624485-57624798(+)$1	313	88	92	11.9999
dddd	chr19:56174870-56175116(+)$1	246	32	36	11.9999
ennn	chr17:18155717-18155971(-)$1	254	124	128	11.9999
gggg	chr5:33460957-33461225(+)$1	268	74	78	11.9999
cccm	chr17:57738885-57739104(+)$1	219	9	13	11.9999
gggg	chr3:184018078-184018302(+)$1	224	195	199	11.9999
IIII	chr16:28855694-28855908(-)$1	214	14	18	11.9999
hhhh	chr20:33867703-33867990(-)$1	287	219	223	11.9999
CCCY	chr9:75531735-75532010(-)$1	275	131	135	11.9999
bbqq	chr3:184039283-184039549(+)$1	266	42	46	11.9999
fff(	chr3:184041969-184042236(+)$1	267	206	210	11.9999
eeee	chr16:1741743-1742079(+)$1	336	4	8	11.9999
rrrr	chr19:49118528-49118799(-)$1	271	29	33	11.9999
hhhh	chr5:118809560-118809809(+)$1	249	83	87	11.9999
::EE	chr8:101734058-101734283(-)$1	225	138	142	11.9999
IIII	chr20:57470577-57470799(+)$1	222	54	58	11.9999
fffm	chr9:95021099-95021376(-)$1	277	167	171	11.9999
EEEE	chr17:7481047-7481275(+)$1	228	25	29	11.9999
====	chr3:52020333-52020557(+)$1	224	66	70	11.9999
cc$$	chr17:45199709-45199992(-)$1	283	91	95	11.9999
DDDY	chr19:56185513-56185779(+)$1	266	245	249	11.9999
ee55	chr15:72500879-72501191(-)$1	312	26	30	11.9999
:CCC	chr12:57058051-57058306(-)$1	255	115	119	11.9999
:III	chr6:43517529-43517752(-)$1	223	65	69	11.9999
ccc%	chr17:46993393-46993650(+)$1	257	24	28	11.9999
e[bb	chr17:40927315-40927586(+)$1	271	9	13	11.9999
ffbb	chr19:48374599-48374863(-)$1	264	124	128	11.9999
[bb[	chr3:49720183-49720453(+)$1	270	18	22	11.9999
dd[d	chr3:184048953-184049217(+)$1	264	49	53	11.9999
====	chr11:18424287-18424532(+)$1	245	86	90	11.9999
ee]f	chr3:184049162-184049388(+)$1	226	50	54	11.9999
HHHH	chr11:755791-756088(+)$1	297	0	4	11.9999
blll	chr3:127325476-127325754(+)$1	278	35	39	11.9999
dddd	chr13:98641215-98641513(+)$1	298	41	45	11.9999
ccc3	chr7:94295425-94295642(+)$1	217	120	124	11.9999
::dd	chr12:56506601-56506926(+)$1	325	99	103	11.9999
===[	chr3:184052709-184053017(+)$1	308	187	191	11.9999
e%%%	chr11:64979262-64979541(+)$1	279	56	60	11.9999
DDff	chr12:53295729-53295956(-)$1	227	39	43	11.9999
dddd	chr5:137909656-137909871(-)$1	215	4	8	11.9999
!!cc	chr2:85823844-85824152(+)$1	308	31	35	11.9999
ddd3	chr11:47444389-47444623(-)$1	234	72	76	11.9999
"ddd	chr15:72491910-72492168(-)$1	258	63	67	11.9999
ccbb	chr10:103917108-103917374(+)$1	266	107	111	11.9999
BDDD	chr10:103918914-103919163(+)$1	249	3	7	11.9999
hhh]	chr17:2593764-2594021(-)$1	257	237	241	11.9999
feee	chr16:3727510-3727758(-)$1	248	103	107	11.9999
lccc	chr3:184044600-184044843(+)$1	243	179	183	11.9999
eeee	chr14:77935319-77935555(+)$1	236	182	186	11.9999
B{FF	chr15:72500860-72501076(-)$1	216	48	52	11.9999
GGGC	chr6:36075131-36075426(+)$1	295	75	79	11.9999
hh!!	chr15:72498977-72499201(-)$1	224	47	51	11.9999
ffff	chr2:96852315-96852582(-)$1	267	58	62	11.9999
::::	chr12:6979510-6979735(+)$1	225	60	64	11.9999

#DB
((((	chr5:150510725-150510949(-)$1	1	83	87	11.9999
))..	chr17:57737842-57738049(+)$1	1	192	196	11.9999
((((	chr17:80014668-80014902(+)$1	1	48	52	11.9999
(((.	chr19:42375318-42375544(+)$1	1	166	170	11.9999
))))	chr14:103987660-103987869(-)$1	1	77	81	11.9999
....	chr5:140956979-140957223(-)$1	1	40	44	11.9999
....	chr11:61077695-61077991(-)$1	1	15	19	11.9999
((((	chr14:35782124-35782363(+)$1	1	17	21	11.9999
..))	chrX:153236967-153237206(-)$1	1	44	48	11.9999
....	chr18:55274774-55274999(-)$1	1	34	38	11.9999
))))	chr16:22295192-22295504(+)$1	1	288	292	11.9999
((((	chr3:48641569-48641843(-)$1	1	54	58	11.9999
..))	chr6:36936179-36936417(-)$1	1	123	127	11.9999
....	chr17:48474584-48474833(-)$1	1	103	107	11.9999
))).	chr1:12072196-12072422(+)$1	1	172	176	11.9999
).))	chr1:156104204-156104419(+)$1	1	209	213	11.9999
((((	chr19:36641060-36641329(+)$1	1	206	210	11.9999
))))	chr14:24567311-24567561(+)$1	1	76	80	11.9999
..((	chr12:57624485-57624798(+)$1	1	88	92	11.9999
))))	chr19:56174870-56175116(+)$1	1	32	36	11.9999
(...	chr17:18155717-18155971(-)$1	1	124	128	11.9999
((((	chr5:33460957-33461225(+)$1	1	74	78	11.9999
(((.	chr17:57738885-57739104(+)$1	1	9	13	11.9999
))))	chr3:184018078-184018302(+)$1	1	195	199	11.9999
((((	chr16:28855694-28855908(-)$1	1	14	18	11.9999
))))	chr20:33867703-33867990(-)$1	1	219	223	11.9999
))).	chr9:75531735-75532010(-)$1	1	131	135	11.9999
((..	chr3:184039283-184039549(+)$1	1	42	46	11.9999
(((.	chr3:184041969-184042236(+)$1	1	206	210	11.9999
((((	chr16:1741743-1742079(+)$1	1	4	8	11.9999
....	chr19:49118528-49118799(-)$1	1	29	33	11.9999
))))	chr5:118809560-118809809(+)$1	1	83	87	11.9999
..((	chr8:101734058-101734283(-)$1	1	138	142	11.9999
((((	chr20:57470577-57470799(+)$1	1	54	58	11.9999
(((.	chr9:95021099-95021376(-)$1	1	167	171	11.9999
((((	chr17:7481047-7481275(+)$1	1	25	29	11.9999
((((	chr3:52020333-52020557(+)$1	1	66	70	11.9999
((..	chr17:45199709-45199992(-)$1	1	91	95	11.9999
))).	chr19:56185513-56185779(+)$1	1	245	249	11.9999
))..	chr15:72500879-72501191(-)$1	1	26	30	11.9999
.(((	chr12:57058051-57058306(-)$1	1	115	119	11.9999
.(((	chr6:43517529-43517752(-)$1	1	65	69	11.9999
(((.	chr17:46993393-46993650(+)$1	1	24	28	11.9999
(.((	chr17:40927315-40927586(+)$1	1	9	13	11.9999
))))	chr19:48374599-48374863(-)$1	1	124	128	11.9999
.((.	chr3:49720183-49720453(+)$1	1	18	22	11.9999
((.(	chr3:184048953-184049217(+)$1	1	49	53	11.9999
))))	chr11:18424287-18424532(+)$1	1	86	90	11.9999
)).)	chr3:184049162-184049388(+)$1	1	50	54	11.9999
((((	chr11:755791-756088(+)$1	1	0	4	11.9999
(...	chr3:127325476-127325754(+)$1	1	35	39	11.9999
))))	chr13:98641215-98641513(+)$1	1	41	45	11.9999
))).	chr7:94295425-94295642(+)$1	1	120	124	11.9999
..((	chr12:56506601-56506926(+)$1	1	99	103	11.9999
(((.	chr3:184052709-184053017(+)$1	1	187	191	11.9999
(...	chr11:64979262-64979541(+)$1	1	56	60	11.9999
((((	chr12:53295729-53295956(-)$1	1	39	43	11.9999
((((	chr5:137909656-137909871(-)$1	1	4	8	11.9999
..((	chr2:85823844-85824152(+)$1	1	31	35	11.9999
))).	chr11:47444389-47444623(-)$1	1	72	76	11.9999
.(((	chr15:72491910-72492168(-)$1	1	63	67	11.9999
))))	chr10:103917108-103917374(+)$1	1	107	111	11.9999
((((	chr10:103918914-103919163(+)$1	1	3	7	11.9999
))).	chr17:2593764-2594021(-)$1	1	237	241	11.9999
((((	chr16:3727510-3727758(-)$1	1	103	107	11.9999
.)))	chr3:184044600-184044843(+)$1	1	179	183	11.9999
))))	chr14:77935319-77935555(+)$1	1	182	186	11.9999
(.((	chr15:72500860-72501076(-)$1	1	48	52	11.9999
((((	chr6:36075131-36075426(+)$1	1	75	79	11.9999
((..	chr15:72498977-72499201(-)$1	1	47	51	11.9999
((((	chr2:96852315-96852582(-)$1	1	58	62	11.9999
....	chr12:6979510-6979735(+)$1	1	60	64	11.9999

#PSSM
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	

#score	863.9999999999994
#seq	72
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_CDS_m1_run2.nuc.txt

#NT
CCCCCUACCCCU	chr16:85687870-85688158(+)$1	288	122	134	19.4042
CACCCUCACCCC	chr19:42736137-42736402(-)$1	265	171	183	18.6595
CCCCCACCACCC	chr6:30036939-30037206(+)$1	267	79	91	19.8297
CCCCCUCGCCCU	chr19:48833601-48833872(+)$1	271	71	83	18.9787
GCCCCUACCCCC	chr8:145065379-145065618(+)$1	239	196	208	19.4042
cccccaccaccc	chr16:30675661-30675929(+)$1	268	61	73	19.8297
CCCCCAGCCCCC	chr19:54969631-54969953(+)$1	322	157	169	20.3617
ccuccuccuccc	chr19:15536453-15536730(-)$1	277	52	64	19.4042
CCCCGUCCCGCC	chr8:124219391-124219664(+)$1	273	149	161	19.5106
CCCCGUCCCCUC	chr7:4780431-4780760(+)$1	329	193	205	19.4042
CCCCCUGCCCGC	chr7:150778688-150778980(-)$1	292	142	154	19.7234
UCCCCUCCCCCC	chr8:101733653-101733913(-)$1	260	6	18	23.6595
CCUCCUCCGCCC	chr10:81930486-81930770(-)$1	284	128	140	19.1914
CCCCCACGCCCC	chr16:28847935-28848199(+)$1	264	24	36	19.6170
CCCCAUCUCCCC	chr1:2125437-2125700(-)$1	263	27	39	19.1914
CCACCUCCCCCC	chr6:34735628-34735874(+)$1	246	127	139	23.3404
ACCCCUCCCUCC	chr15:89442428-89442733(-)$1	305	243	255	19.0851
ccgccuccuccc	chr16:24578446-24578780(+)$1	334	123	135	19.2978
CCCCUUCCCACC	chr12:56506563-56506845(+)$1	282	148	160	19.0851
UCCCCUUCCCCC	chr17:47788612-47788888(-)$1	276	130	142	20.0425
cccccucccccc	chr17:29422092-29422390(+)$1	298	16	28	27.1702
cccccgcccgcc	chrX:152954174-152954391(+)$1	217	124	136	19.9361
CCCCCACCCCCC	chr19:40873539-40873806(+)$1	267	49	61	23.7659
CCACCUGCCCCC	chr1:154241329-154241646(+)$1	317	14	26	19.9361
CACCCUCCCGCC	chrX:153284547-153284788(-)$1	241	11	23	18.9787
CCCCCUCCCUUC	chr1:113243877-113244205(-)$1	328	68	80	19.1914
CUCCCUCCCCCA	chr3:183901298-183901562(+)$1	264	165	177	18.8723
CCACCUCCCCGC	chr16:223483-223693(+)$1	210	22	34	19.2978
CCCCUUCCCCCC	chr8:145065549-145065824(+)$1	275	162	174	23.2340
CCCCCUUCCCCG	chr17:26900723-26900988(-)$1	265	106	118	19.5106
UCCCCUGCCCCC	chrX:53565733-53566042(-)$1	309	123	135	20.2553
CCCCCUCCCCCC	chr22:20936807-20937126(+)$1	319	162	174	27.1702
cccccgcccgcc	chr16:28834448-28834694(+)$1	246	4	16	19.9361
CUCCCUCUCCCC	chr19:54969849-54970153(+)$1	304	60	72	18.6595
cccacuuccccc	chr17:7417282-7417521(+)$1	239	52	64	18.7659
CCCCCUCCCCCG	chr7:143079339-143079624(+)$1	285	78	90	23.1276
UCCCCGCCCCCC	chr3:47454284-47454550(+)$1	266	109	121	20.2553
CCCCCUCCUCCC	chr2:55276867-55277219(-)$1	352	212	224	23.4468
CCCCAUGCCCCC	chrX:48652360-48652605(+)$1	245	159	171	19.9361
UCCCCUCCUCCC	chr19:1012265-1012574(-)$1	309	156	168	19.9361
CCCCCGCCCCCA	chr7:5352387-5352721(-)$1	334	256	268	19.8297
UCCCCUCCCCUC	chr19:3782616-3782919(-)$1	303	114	126	19.7234
CCCCCGCCCCCA	chr16:230565-230811(+)$1	246	32	44	19.8297
CCACCUCCGCCC	chr16:3026860-3027143(-)$1	283	254	266	19.4042
CCCCAUCCCCAC	chr16:85689267-85689513(+)$1	246	109	121	19.2978
CCCCCUCACCCC	chr6:31747284-31747506(-)$1	222	165	177	23.0212

#otherMatches

#Struct PSSM
c[a[aqqqqqqq	chr7:99704866-99705142(-)$1	276	140	152	19.2978
E{GGGGGGGNNN	chr16:85687870-85688158(+)$1	288	122	134	19.4042
qqccc:::::::	chr19:42736137-42736402(-)$1	265	171	183	18.6595
d]bb22bb:::D	chr6:30036939-30037206(+)$1	267	79	91	19.8297
rrrrrffffff]	chr19:48833601-48833872(+)$1	271	71	83	18.9787
::::::::::::	chr8:145065379-145065618(+)$1	239	196	208	19.4042
HHHKKCCC{DDD	chr16:30675661-30675929(+)$1	268	61	73	19.8297
qqqqqqccc666	chr19:54969631-54969953(+)$1	322	157	169	20.3617
::::::::::::	chr19:15536453-15536730(-)$1	277	52	64	19.4042
mmmbb]bb]ccc	chr8:124219391-124219664(+)$1	273	149	161	19.5106
ddd[cccqqqqq	chr7:4780431-4780760(+)$1	329	193	205	19.4042
>>>>ffffffff	chr7:150778688-150778980(-)$1	292	142	154	19.7234
::CCCOOOOOOD	chr8:101733653-101733913(-)$1	260	6	18	23.6595
OOEEEEE:::::	chr10:81930486-81930770(-)$1	284	128	140	19.1914
^^^^^^^^^^^^	chr16:28847935-28848199(+)$1	264	24	36	19.6170
:::::::::GGG	chr1:2125437-2125700(-)$1	263	27	39	19.1914
:::cccdddd""	chr6:34735628-34735874(+)$1	246	127	139	23.3404
2bb]bbgggggg	chr15:89442428-89442733(-)$1	305	243	255	19.0851
CCCC::::::::	chr16:24578446-24578780(+)$1	334	123	135	19.2978
ZZZDDDD/////	chr12:56506563-56506845(+)$1	282	148	160	19.0851
qqqqqqdddd::	chr17:47788612-47788888(-)$1	276	130	142	20.0425
::::::::::::	chr17:29422092-29422390(+)$1	298	16	28	27.1702
bb]eeeee:ddd	chrX:152954174-152954391(+)$1	217	124	136	19.9361
""dddd####dd	chr19:40873539-40873806(+)$1	267	49	61	23.7659
CCCEEEEE::::	chr1:154241329-154241646(+)$1	317	14	26	19.9361
dqqqqqqqqddd	chrX:153284547-153284788(-)$1	241	11	23	18.9787
fffftttttttt	chr1:113243877-113244205(-)$1	328	68	80	19.1914
c]ccc>>>>>>>	chr3:183901298-183901562(+)$1	264	165	177	18.8723
vvvvvvvvvvdd	chr16:223483-223693(+)$1	210	22	34	19.2978
eeee!!ddddcc	chr8:145065549-145065824(+)$1	275	162	174	23.2340
ii$$$$$agggg	chr17:26900723-26900988(-)$1	265	106	118	19.5106
ggggbb>>>>>>	chrX:53565733-53566042(-)$1	309	123	135	20.2553
DD}AA}CCC}CC	chr22:20936807-20937126(+)$1	319	162	174	27.1702
:::::ggggggg	chr16:28834448-28834694(+)$1	246	4	16	19.9361
ssccc:::::::	chr19:54969849-54970153(+)$1	304	60	72	18.6595
^^^^^^^^^^^^	chr17:7417282-7417521(+)$1	239	52	64	18.7659
HHHH{DDDDbbo	chr7:143079339-143079624(+)$1	285	78	90	23.1276
::EEEEE:::::	chr3:47454284-47454550(+)$1	266	109	121	20.2553
xxxxxxxxxxxx	chr2:55276867-55277219(-)$1	352	212	224	23.4468
cnnnnnccc:::	chrX:48652360-48652605(+)$1	245	159	171	19.9361
gggg[ddddabb	chr19:1012265-1012574(-)$1	309	156	168	19.9361
eetttttttttt	chr7:5352387-5352721(-)$1	334	256	268	19.8297
GGGG::::::::	chr19:3782616-3782919(-)$1	303	114	126	19.7234
EKKEEEEE{BB:	chr16:230565-230811(+)$1	246	32	44	19.8297
DDDDBBYYCCC}	chr16:3026860-3027143(-)$1	283	254	266	19.4042
::::::::::::	chr16:85689267-85689513(+)$1	246	109	121	19.2978
effffff]bb]b	chr6:31747284-31747506(-)$1	222	165	177	23.0212

#DB
(.(.(.......	chr7:99704866-99705142(-)$1	1	140	152	19.2978
(.(((((((...	chr16:85687870-85688158(+)$1	1	122	134	19.4042
..))).......	chr19:42736137-42736402(-)$1	1	171	183	18.6595
).))..))...)	chr6:30036939-30037206(+)$1	1	79	91	19.8297
.....)))))).	chr19:48833601-48833872(+)$1	1	71	83	18.9787
............	chr8:145065379-145065618(+)$1	1	196	208	19.4042
(((..(((.(((	chr16:30675661-30675929(+)$1	1	61	73	19.8297
......)))...	chr19:54969631-54969953(+)$1	1	157	169	20.3617
............	chr19:15536453-15536730(-)$1	1	52	64	19.4042
...)).)).)))	chr8:124219391-124219664(+)$1	1	149	161	19.5106
(((.(((.....	chr7:4780431-4780760(+)$1	1	193	205	19.4042
....))))))((	chr7:150778688-150778980(-)$1	1	142	154	19.7234
..(((......(	chr8:101733653-101733913(-)$1	1	6	18	23.6595
..(((((.....	chr10:81930486-81930770(-)$1	1	128	140	19.1914
............	chr16:28847935-28848199(+)$1	1	24	36	19.6170
.........(((	chr1:2125437-2125700(-)$1	1	27	39	19.1914
...(((((((..	chr6:34735628-34735874(+)$1	1	127	139	23.3404
.)).))))))))	chr15:89442428-89442733(-)$1	1	243	255	19.0851
))))........	chr16:24578446-24578780(+)$1	1	123	135	19.2978
...)))).....	chr12:56506563-56506845(+)$1	1	148	160	19.0851
......))))..	chr17:47788612-47788888(-)$1	1	130	142	20.0425
............	chr17:29422092-29422390(+)$1	1	16	28	27.1702
)).))))).(((	chrX:152954174-152954391(+)$1	1	124	136	19.9361
..((((....((	chr19:40873539-40873806(+)$1	1	49	61	23.7659
((((((((....	chr1:154241329-154241646(+)$1	1	14	26	19.9361
(........)))	chrX:153284547-153284788(-)$1	1	11	23	18.9787
((((........	chr1:113243877-113244205(-)$1	1	68	80	19.1914
).))).......	chr3:183901298-183901562(+)$1	1	165	177	18.8723
..........))	chr16:223483-223693(+)$1	1	22	34	19.2978
((((..((((((	chr8:145065549-145065824(+)$1	1	162	174	23.2340
((.....(((((	chr17:26900723-26900988(-)$1	1	106	118	19.5106
))))))......	chrX:53565733-53566042(-)$1	1	123	135	20.2553
)).)).))).))	chr22:20936807-20937126(+)$1	1	162	174	27.1702
.....(((((((	chr16:28834448-28834694(+)$1	1	4	16	19.9361
..))).......	chr19:54969849-54970153(+)$1	1	60	72	18.6595
............	chr17:7417282-7417521(+)$1	1	52	64	18.7659
((((.((((((.	chr7:143079339-143079624(+)$1	1	78	90	23.1276
..(((((.....	chr3:47454284-47454550(+)$1	1	109	121	20.2553
............	chr2:55276867-55277219(-)$1	1	212	224	23.4468
(.....)))...	chrX:48652360-48652605(+)$1	1	159	171	19.9361
((((.(((((((	chr19:1012265-1012574(-)$1	1	156	168	19.9361
((..........	chr7:5352387-5352721(-)$1	1	256	268	19.8297
((((........	chr19:3782616-3782919(-)$1	1	114	126	19.7234
(..(((((.((.	chr16:230565-230811(+)$1	1	32	44	19.8297
))))))..))).	chr16:3026860-3027143(-)$1	1	254	266	19.4042
............	chr16:85689267-85689513(+)$1	1	109	121	19.2978
))))))).)).)	chr6:31747284-31747506(-)$1	1	165	177	23.0212

#PSSM
C : 0.68	c : 0.14	U : 0.12	G : 0.02	A : 0.02	
C : 0.76	c : 0.14	A : 0.04	U : 0.04	
C : 0.74	c : 0.10	A : 0.08	u : 0.02	U : 0.02	g : 0.02	
C : 0.85	c : 0.12	a : 0.02	
C : 0.68	c : 0.14	G : 0.06	A : 0.06	U : 0.04	
U : 0.70	A : 0.08	u : 0.08	G : 0.06	g : 0.04	a : 0.02	
C : 0.65	c : 0.12	G : 0.10	A : 0.04	U : 0.04	u : 0.02	
C : 0.72	c : 0.14	A : 0.04	G : 0.04	U : 0.04	
C : 0.74	c : 0.08	u : 0.04	G : 0.04	U : 0.04	A : 0.02	a : 0.02	
C : 0.74	c : 0.10	G : 0.04	U : 0.04	g : 0.04	A : 0.02	
C : 0.70	c : 0.14	U : 0.06	A : 0.04	G : 0.04	
C : 0.70	c : 0.14	A : 0.06	U : 0.04	G : 0.04	

#score	958.8085106382982
#seq	47
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_transcript_m3_run2.nuc.txt

#NT
CCCAGGG	chr21:46907261-46907507(+)$1	246	34	41	14.5000
CCCUGGC	chr7:100285330-100285608(-)$1	278	163	170	13.1666
GCCAGGC	chr10:95353498-95353742(-)$1	244	132	139	14.0000
CCCAGGC	chr21:46896254-46896489(+)$1	235	25	32	17.3333
CCCAGGA	chr20:17602083-17602290(-)$1	207	2	9	14.3333
CCCAGGC	chr16:15014074-15014344(+)$1	270	49	56	17.3333
GCCAGGC	chr9:124065091-124065405(+)$1	314	66	73	14.0000
GCCAGGC	chr13:114843558-114843785(-)$1	227	183	190	14.0000
CCCAGCC	chr8:11706505-11706774(-)$1	269	54	61	13.1666
CCCAGGC	chr20:60889758-60889985(-)$1	227	105	112	17.3333
CCCGGGC	chr17:79804207-79804428(-)$1	221	137	144	13.3333
CCCAGCC	chr9:116999160-116999366(+)$1	206	74	81	13.1666
CCCGGGC	chr9:128003449-128003675(-)$1	226	174	181	13.3333
CCCGGGC	chr19:18499322-18499636(+)$1	314	114	121	13.3333
UCCAGGC	chr5:138614432-138614648(+)$1	216	55	62	13.7500
GCCAGGC	chr17:80193757-80193980(+)$1	223	41	48	14.0000
CCCAGGC	chr21:46914714-46914929(+)$1	215	173	180	17.3333
CCCAGGC	chr1:43394505-43394746(-)$1	241	222	229	17.3333
CCCAGCC	chr6:132271532-132271758(-)$1	226	215	222	13.1666
CCCAGGC	chr20:61463405-61463629(+)$1	224	191	198	17.3333
CCCAGGC	chr16:2015161-2015395(+)$1	234	133	140	17.3333
CCCAGGU	chr8:145640036-145640325(-)$1	289	40	47	14.1666
CCCUGGC	chr19:6694523-6694745(-)$1	222	6	13	13.1666
UCCAGGC	chr5:138614427-138614632(+)$1	205	60	67	13.7500
CCCAGGC	chr9:117027601-117027841(+)$1	240	123	130	17.3333
CCCAGGU	chr11:75111333-75111571(+)$1	238	149	156	14.1666
CCCAGGC	chr20:61542223-61542477(-)$1	254	192	199	17.3333
CCCAGGG	chr21:46897630-46897891(+)$1	261	28	35	14.5000
CCCAGGC	chr17:76969118-76969330(-)$1	212	194	201	17.3333
CCCAGGA	chr9:117008045-117008260(+)$1	215	39	46	14.3333
ccCAGGA	chr7:2671530-2671798(+)$1	268	135	142	14.3333
CCCAGGC	chr20:39800781-39801023(+)$1	242	161	168	17.3333
CCCAGGG	chr16:33965408-33965634(+)$1	226	142	149	14.5000
CCCGGGC	chr20:61458503-61458736(+)$1	233	5	12	13.3333
CCCAGGC	chr16:2164068-2164313(-)$1	245	173	180	17.3333
CCCAGGC	chr17:79812989-79813207(-)$1	218	199	206	17.3333
CCCAGGC	chr1:979613-979852(+)$1	239	11	18	17.3333
CCCAGCC	chr16:89839650-89839893(-)$1	243	199	206	13.1666
ACCAGGC	chr20:307084-307325(-)$1	241	221	228	13.5833
CCCAGCC	chr19:6710630-6710890(-)$1	260	5	12	13.1666
ACCAGGC	chr17:1675093-1675352(+)$1	259	122	129	13.5833
CCCAGGG	chr4:166300240-166300549(+)$1	309	64	71	14.5000
UCCAGGC	chr14:23770951-23771156(+)$1	205	39	46	13.7500
CCCAGGG	chr21:46899887-46900136(+)$1	249	62	69	14.5000
CCCAGGG	chr6:43109569-43109847(+)$1	278	174	181	14.5000
CCCAGGU	chr1:45242066-45242309(+)$1	243	210	217	14.1666
GCCAGGC	chr20:61461020-61461271(+)$1	251	0	7	14.0000
CCCAGGU	chr9:117062261-117062503(+)$1	242	20	27	14.1666
CCCCGGC	chr17:79918551-79918888(-)$1	337	17	24	13.1666
gccaggc	chr8:17767353-17767605(-)$1	252	78	85	14.0000
CCCAGGC	chr20:60911307-60911584(-)$1	277	78	85	17.3333
CCCAGGA	chr11:116706886-116707131(-)$1	245	78	85	14.3333
CCCAGGA	chr10:73590803-73591034(-)$1	231	196	203	14.3333
CCCAGGA	chr16:18480409-18480791(-)$1	382	69	76	14.3333
CCCAGGC	chr4:155507323-155507616(-)$1	293	226	233	17.3333
GCCAGGC	chr6:31239335-31239639(-)$1	304	198	205	14.0000
CCCCGGC	chr1:43996623-43996864(+)$1	241	148	155	13.1666
CCCAGGG	chr19:35758032-35758292(+)$1	260	92	99	14.5000
CCCAGGG	chr3:58084339-58084607(+)$1	268	137	144	14.5000

#otherMatches

#Struct PSSM
eeeeccc	chr6:160492916-160493144(+)$1	228	28	35	13.7500
EEEEEJJ	chr21:46907261-46907507(+)$1	246	34	41	14.5000
[ffffff	chr7:100285330-100285608(-)$1	278	163	170	13.1666
mmmeeee	chr10:95353498-95353742(-)$1	244	132	139	14.0000
CCBB{BB	chr21:46896254-46896489(+)$1	235	25	32	17.3333
BBKKCCC	chr20:17602083-17602290(-)$1	207	2	9	14.3333
ffffffa	chr16:15014074-15014344(+)$1	270	49	56	17.3333
2dddd55	chr9:124065091-124065405(+)$1	314	66	73	14.0000
ffffffc	chr13:114843558-114843785(-)$1	227	183	190	14.0000
iiccc:c	chr8:11706505-11706774(-)$1	269	54	61	13.1666
c:::::c	chr20:60889758-60889985(-)$1	227	105	112	17.3333
ffffff!	chr17:79804207-79804428(-)$1	221	137	144	13.3333
eeeeecc	chr9:116999160-116999366(+)$1	206	74	81	13.1666
DDD}FFF	chr9:128003449-128003675(-)$1	226	174	181	13.3333
F{FFFFF	chr19:18499322-18499636(+)$1	314	114	121	13.3333
ffeeeee	chr5:138614432-138614648(+)$1	216	55	62	13.7500
bbhhhhh	chr17:80193757-80193980(+)$1	223	41	48	14.0000
CCC}EEE	chr21:46914714-46914929(+)$1	215	173	180	17.3333
ellleee	chr1:43394505-43394746(-)$1	241	222	229	17.3333
:::CCC:	chr6:132271532-132271758(-)$1	226	215	222	13.1666
bb55555	chr20:61463405-61463629(+)$1	224	191	198	17.3333
555gggg	chr16:2015161-2015395(+)$1	234	133	140	17.3333
KKBBCCC	chr8:145640036-145640325(-)$1	289	40	47	14.1666
eeeeebb	chr19:6694523-6694745(-)$1	222	6	13	13.1666
ffeeeee	chr5:138614427-138614632(+)$1	205	60	67	13.7500
uuuuuuu	chr9:117027601-117027841(+)$1	240	123	130	17.3333
[eeeee!	chr11:75111333-75111571(+)$1	238	149	156	14.1666
ff!!eee	chr20:61542223-61542477(-)$1	254	192	199	17.3333
GGGGGGG	chr21:46897630-46897891(+)$1	261	28	35	14.5000
}EEEEEZ	chr17:76969118-76969330(-)$1	212	194	201	17.3333
hlllhhh	chr9:117008045-117008260(+)$1	215	39	46	14.3333
fff[bb!	chr7:2671530-2671798(+)$1	268	135	142	14.3333
bbfffff	chr20:39800781-39801023(+)$1	242	161	168	17.3333
ccc]eee	chr16:33965408-33965634(+)$1	226	142	149	14.5000
CCDDDDC	chr20:61458503-61458736(+)$1	233	5	12	13.3333
DDD:ccc	chr16:2164068-2164313(-)$1	245	173	180	17.3333
}HHHHHH	chr17:79812989-79813207(-)$1	218	199	206	17.3333
EEEEAFF	chr1:979613-979852(+)$1	239	11	18	17.3333
bb!!ddd	chr16:89839650-89839893(-)$1	243	199	206	13.1666
~~~~DDD	chr20:307084-307325(-)$1	241	221	228	13.5833
ccc[ddd	chr19:6710630-6710890(-)$1	260	5	12	13.1666
HHYYCCC	chr17:1675093-1675352(+)$1	259	122	129	13.5833
DDD{DDD	chr4:166300240-166300549(+)$1	309	64	71	14.5000
CC:::bb	chr14:23770951-23771156(+)$1	205	39	46	13.7500
fflllff	chr21:46899887-46900136(+)$1	249	62	69	14.5000
G}GGGGG	chr6:43109569-43109847(+)$1	278	174	181	14.5000
333ccc2	chr1:45242066-45242309(+)$1	243	210	217	14.1666
:::EEEE	chr20:61461020-61461271(+)$1	251	0	7	14.0000
b####dd	chr9:117062261-117062503(+)$1	242	20	27	14.1666
HHHHHHH	chr17:79918551-79918888(-)$1	337	17	24	13.1666
EEE{BBM	chr8:17767353-17767605(-)$1	252	78	85	14.0000
hhhhbbe	chr20:60911307-60911584(-)$1	277	78	85	17.3333
eeeeenn	chr11:116706886-116707131(-)$1	245	78	85	14.3333
BB}A}FF	chr10:73590803-73591034(-)$1	231	196	203	14.3333
GGGGGG:	chr16:18480409-18480791(-)$1	382	69	76	14.3333
eeeeell	chr4:155507323-155507616(-)$1	293	226	233	17.3333
dd[ccca	chr6:31239335-31239639(-)$1	304	198	205	14.0000
bb]bbaf	chr1:43996623-43996864(+)$1	241	148	155	13.1666
::::ddd	chr19:35758032-35758292(+)$1	260	92	99	14.5000
GGGGGGG	chr3:58084339-58084607(+)$1	268	137	144	14.5000

#DB
(((((((	chr6:160492916-160493144(+)$1	1	28	35	13.7500
(((((((	chr21:46907261-46907507(+)$1	1	34	41	14.5000
.((((((	chr7:100285330-100285608(-)$1	1	163	170	13.1666
...))))	chr10:95353498-95353742(-)$1	1	132	139	14.0000
((((.((	chr21:46896254-46896489(+)$1	1	25	32	17.3333
((..(((	chr20:17602083-17602290(-)$1	1	2	9	14.3333
)))))))	chr16:15014074-15014344(+)$1	1	49	56	17.3333
.))))..	chr9:124065091-124065405(+)$1	1	66	73	14.0000
)))))))	chr13:114843558-114843785(-)$1	1	183	190	14.0000
))))).(	chr8:11706505-11706774(-)$1	1	54	61	13.1666
).....(	chr20:60889758-60889985(-)$1	1	105	112	17.3333
((((((.	chr17:79804207-79804428(-)$1	1	137	144	13.3333
)))))))	chr9:116999160-116999366(+)$1	1	74	81	13.1666
))).)))	chr9:128003449-128003675(-)$1	1	174	181	13.3333
(.(((((	chr19:18499322-18499636(+)$1	1	114	121	13.3333
(((((((	chr5:138614432-138614648(+)$1	1	55	62	13.7500
(((((((	chr17:80193757-80193980(+)$1	1	41	48	14.0000
))).)))	chr21:46914714-46914929(+)$1	1	173	180	17.3333
(...)))	chr1:43394505-43394746(-)$1	1	222	229	17.3333
...))).	chr6:132271532-132271758(-)$1	1	215	222	13.1666
)).....	chr20:61463405-61463629(+)$1	1	191	198	17.3333
...))))	chr16:2015161-2015395(+)$1	1	133	140	17.3333
..(((((	chr8:145640036-145640325(-)$1	1	40	47	14.1666
(((((((	chr19:6694523-6694745(-)$1	1	6	13	13.1666
(((((((	chr5:138614427-138614632(+)$1	1	60	67	13.7500
.......	chr9:117027601-117027841(+)$1	1	123	130	17.3333
.(((((.	chr11:75111333-75111571(+)$1	1	149	156	14.1666
((..(((	chr20:61542223-61542477(-)$1	1	192	199	17.3333
(((((((	chr21:46897630-46897891(+)$1	1	28	35	14.5000
.))))).	chr17:76969118-76969330(-)$1	1	194	201	17.3333
(...)))	chr9:117008045-117008260(+)$1	1	39	46	14.3333
(((.((.	chr7:2671530-2671798(+)$1	1	135	142	14.3333
(((((((	chr20:39800781-39801023(+)$1	1	161	168	17.3333
))).)))	chr16:33965408-33965634(+)$1	1	142	149	14.5000
(((((((	chr20:61458503-61458736(+)$1	1	5	12	13.3333
))).(((	chr16:2164068-2164313(-)$1	1	173	180	17.3333
.))))))	chr17:79812989-79813207(-)$1	1	199	206	17.3333
(((((((	chr1:979613-979852(+)$1	1	11	18	17.3333
((..(((	chr16:89839650-89839893(-)$1	1	199	206	13.1666
....)))	chr20:307084-307325(-)$1	1	221	228	13.5833
(((.(((	chr19:6710630-6710890(-)$1	1	5	12	13.1666
))..)))	chr17:1675093-1675352(+)$1	1	122	129	13.5833
(((.(((	chr4:166300240-166300549(+)$1	1	64	71	14.5000
((...((	chr14:23770951-23771156(+)$1	1	39	46	13.7500
((...))	chr21:46899887-46900136(+)$1	1	62	69	14.5000
).)))))	chr6:43109569-43109847(+)$1	1	174	181	14.5000
...))).	chr1:45242066-45242309(+)$1	1	210	217	14.1666
...((((	chr20:61461020-61461271(+)$1	1	0	7	14.0000
(....((	chr9:117062261-117062503(+)$1	1	20	27	14.1666
(((((((	chr17:79918551-79918888(-)$1	1	17	24	13.1666
(((.((.	chr8:17767353-17767605(-)$1	1	78	85	14.0000
))))(((	chr20:60911307-60911584(-)$1	1	78	85	17.3333
(((((..	chr11:116706886-116707131(-)$1	1	78	85	14.3333
)).).))	chr10:73590803-73591034(-)$1	1	196	203	14.3333
((((((.	chr16:18480409-18480791(-)$1	1	69	76	14.3333
(((((..	chr4:155507323-155507616(-)$1	1	226	233	17.3333
((.((((	chr6:31239335-31239639(-)$1	1	198	205	14.0000
)).))))	chr1:43996623-43996864(+)$1	1	148	155	13.1666
....(((	chr19:35758032-35758292(+)$1	1	92	99	14.5000
(((((((	chr3:58084339-58084607(+)$1	1	137	144	14.5000

#PSSM
C : 0.76	G : 0.09	U : 0.06	A : 0.03	c : 0.01	g : 0.01	
C : 0.96	c : 0.03	
C : 0.98	c : 0.01	
A : 0.85	G : 0.06	U : 0.03	C : 0.03	a : 0.01	
G : 0.98	g : 0.01	
G : 0.90	C : 0.08	g : 0.01	
C : 0.68	G : 0.13	A : 0.09	U : 0.06	c : 0.01	

#score	888.0000000000015
#seq	60
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_transcript_m1_run2.nuc.txt

#NT
UGGUCUUG	chr11:75115614-75115831(+)$1	217	37	45	10.4000
AGGUUGUC	chr19:45981754-45981957(-)$1	203	2	10	10.0000
ugguuuuc	chr11:109641715-109641919(-)$1	204	179	187	17.3000
CGGGUUUC	chr10:81074843-81075127(+)$1	284	46	54	9.7000
ugguuuuc	chr13:41634801-41635036(-)$1	235	119	127	17.3000
ugguugug	chrX:71284303-71284524(+)$1	221	44	52	10.5000
ugguuuuc	chr1:16993335-16993541(-)$1	206	136	144	17.3000
AGGUUGUC	chr19:45981775-45981998(-)$1	223	43	51	10.0000
UGGUUCUC	chr10:79793520-79793765(+)$1	245	95	103	13.3000
UGGCUUUC	chr12:133450881-133451189(-)$1	308	9	17	14.3000
UGGUUUUC	chr5:180692567-180692776(+)$1	209	47	55	17.3000
UGGCUCUC	chr1:227087882-227088095(+)$1	213	111	119	10.3000
UUGUUUCC	chr6:34555094-34555366(-)$1	272	112	120	10.4000
AGGUUUGC	chr19:30804045-30804269(+)$1	224	84	92	9.8000
ugGUCUUA	chr10:43492980-43493190(+)$1	210	177	185	10.5000
GGGUUUUC	chrM:12107-12350(+)$1	243	18	26	13.3000
UGGCUUUA	chr5:140090781-140090996(+)$1	215	82	90	11.2000
UUGUUUUG	chr5:140105664-140105891(+)$1	227	6	14	10.7000
ugguuuuc	chr13:41634760-41634980(-)$1	220	63	71	17.3000
ugguuucc	chr6:76735915-76736142(-)$1	227	13	21	13.8000
ugguuucu	chr1:45187465-45187674(-)$1	209	106	114	10.7000
ugguuuuc	chr1:17066912-17067140(+)$1	228	136	144	17.3000
UUGCUUUC	chr17:8125449-8125688(-)$1	239	163	171	10.9000
UGGGGUUC	chrX:16185864-16186100(-)$1	236	213	221	9.6000
AGGUUGUC	chr19:45981798-45982021(-)$1	223	66	74	10.0000
UUGUUUUC	chr21:42006116-42006339(-)$1	223	196	204	13.9000
ugguuuuc	chr11:109641727-109641935(-)$1	208	195	203	17.3000
UGGCUUUC	chrM:12180-12398(+)$1	218	75	83	14.3000
UGGUUUUC	chr5:180692576-180692792(+)$1	216	38	46	17.3000
ugguuuuc	chr13:41634780-41635001(-)$1	221	84	92	17.3000
UGGUCUUC	chr10:43492990-43493201(+)$1	211	200	208	13.6000
UGGUUUUU	chr5:134259680-134259904(+)$1	224	87	95	14.2000
UUGCUUUC	chr17:8125488-8125719(-)$1	231	194	202	10.9000
ugguuucu	chr1:45187452-45187665(-)$1	213	97	105	10.7000
uggacuuc	chr1:94313076-94313318(+)$1	242	79	87	9.9000
ugguuuuc	chr1:16993315-16993535(-)$1	220	130	138	17.3000
UGGUCUCC	chr19:14280678-14280944(-)$1	266	92	100	10.1000
ugguugug	chr18:2716889-2717121(+)$1	232	108	116	10.5000
AGGUUGUC	chr19:45981771-45981975(-)$1	204	20	28	10.0000
UUGUUUUU	chr1:45242081-45242307(+)$1	226	20	28	10.8000
UGGUUUGA	chr7:103029305-103029514(-)$1	209	3	11	10.4000
UGGCUUUA	chr5:140090800-140091031(+)$1	231	63	71	11.2000
UGGGUUCC	chr12:133451183-133451460(-)$1	277	15	23	10.3000
UGGCUUUC	chrM:12176-12380(+)$1	204	79	87	14.3000
UGGUUUGA	chr7:103029314-103029525(-)$1	211	14	22	10.4000
UGGUUUUC	chr11:75115118-75115352(+)$1	234	178	186	17.3000
GGGUUUUC	chrM:12060-12299(+)$1	239	65	73	13.3000
UGCUUUUC	chr15:66069976-66070236(-)$1	260	202	210	12.5000
UUGUUUUU	chr16:18801528-18801755(-)$1	227	22	30	10.8000

#otherMatches

#Struct PSSM
E{EEEEE{	chr16:18800293-18800542(-)$1	249	85	93	10.2000
::cccooo	chr11:75115614-75115831(+)$1	217	37	45	10.4000
:EEEEEKK	chr19:45981754-45981957(-)$1	203	2	10	10.0000
ccc:::::	chr11:109641715-109641919(-)$1	204	179	187	17.3000
[ffffff[	chr10:81074843-81075127(+)$1	284	46	54	9.7000
eeeppppp	chr13:41634801-41635036(-)$1	235	119	127	17.3000
ddddddd]	chrX:71284303-71284524(+)$1	221	44	52	10.5000
eeeeffff	chr1:16993335-16993541(-)$1	206	136	144	17.3000
CCC:::::	chr19:45981775-45981998(-)$1	223	43	51	10.0000
ggg+++++	chr10:79793520-79793765(+)$1	245	95	103	13.3000
[ccc"""d	chr12:133450881-133451189(-)$1	308	9	17	14.3000
ceeeee""	chr5:180692567-180692776(+)$1	209	47	55	17.3000
"ccc!!bb	chr1:227087882-227088095(+)$1	213	111	119	10.3000
:::::ccc	chr6:34555094-34555366(-)$1	272	112	120	10.4000
hhhhhhhd	chr19:30804045-30804269(+)$1	224	84	92	9.8000
CC}CCC}B	chr10:43492980-43493190(+)$1	210	177	185	10.5000
ddd:::::	chrM:12107-12350(+)$1	243	18	26	13.3000
ffmmmmff	chr5:140090781-140090996(+)$1	215	82	90	11.2000
EE:hhhhh	chr5:140105664-140105891(+)$1	227	6	14	10.7000
eeeppppp	chr13:41634760-41634980(-)$1	220	63	71	17.3000
qqqqqqee	chr6:76735915-76736142(-)$1	227	13	21	13.8000
iiiiiii:	chr1:45187465-45187674(-)$1	209	106	114	10.7000
eeeeffff	chr1:17066912-17067140(+)$1	228	136	144	17.3000
gg''''''	chr17:8125449-8125688(-)$1	239	163	171	10.9000
_FFFFFF}	chrX:16185864-16186100(-)$1	236	213	221	9.6000
FFAKKDDD	chr19:45981798-45982021(-)$1	223	66	74	10.0000
ZDDDD___	chr21:42006116-42006339(-)$1	223	196	204	13.9000
::::::::	chr11:109641727-109641935(-)$1	208	195	203	17.3000
eeHHHHHH	chrM:12180-12398(+)$1	218	75	83	14.3000
ceeeee""	chr5:180692576-180692792(+)$1	216	38	46	17.3000
eeeppppp	chr13:41634780-41635001(-)$1	221	84	92	17.3000
IIII::::	chr10:43492990-43493201(+)$1	211	200	208	13.6000
hhqqqqqq	chr5:134259680-134259904(+)$1	224	87	95	14.2000
::::::::	chr17:8125488-8125719(-)$1	231	194	202	10.9000
hhhhhhhE	chr1:45187452-45187665(-)$1	213	97	105	10.7000
idddd$$$	chr1:94313076-94313318(+)$1	242	79	87	9.9000
eeeeffff	chr1:16993315-16993535(-)$1	220	130	138	17.3000
MBB{GGGG	chr19:14280678-14280944(-)$1	266	92	100	10.1000
eeee[ggg	chr18:2716889-2717121(+)$1	232	108	116	10.5000
rrrrrrff	chr19:45981771-45981975(-)$1	204	20	28	10.0000
cc))))))	chr1:45242081-45242307(+)$1	226	20	28	10.8000
:DDDDggg	chr7:103029305-103029514(-)$1	209	3	11	10.4000
ffmmmmff	chr5:140090800-140091031(+)$1	231	63	71	11.2000
JJJJLLLB	chr12:133451183-133451460(-)$1	277	15	23	10.3000
eeHHHHHH	chrM:12176-12380(+)$1	204	79	87	14.3000
:::::ggg	chr7:103029314-103029525(-)$1	211	14	22	10.4000
}DDDD}II	chr11:75115118-75115352(+)$1	234	178	186	17.3000
ddd:::::	chrM:12060-12299(+)$1	239	65	73	13.3000
^ccc0000	chr15:66069976-66070236(-)$1	260	202	210	12.5000
$$ccc[dd	chr16:18801528-18801755(-)$1	227	22	30	10.8000

#DB
(.(((((.	chr16:18800293-18800542(-)$1	1	85	93	10.2000
..(((...	chr11:75115614-75115831(+)$1	1	37	45	10.4000
.(((((..	chr19:45981754-45981957(-)$1	1	2	10	10.0000
))).....	chr11:109641715-109641919(-)$1	1	179	187	17.3000
.((((((.	chr10:81074843-81075127(+)$1	1	46	54	9.7000
(((.....	chr13:41634801-41635036(-)$1	1	119	127	17.3000
))))))).	chrX:71284303-71284524(+)$1	1	44	52	10.5000
))))))))	chr1:16993335-16993541(-)$1	1	136	144	17.3000
(((.....	chr19:45981775-45981998(-)$1	1	43	51	10.0000
(((.....	chr10:79793520-79793765(+)$1	1	95	103	13.3000
.(((...(	chr12:133450881-133451189(-)$1	1	9	17	14.3000
((((((..	chr5:180692567-180692776(+)$1	1	47	55	17.3000
.(((..((	chr1:227087882-227088095(+)$1	1	111	119	10.3000
.....(((	chr6:34555094-34555366(-)$1	1	112	120	10.4000
((((((((	chr19:30804045-30804269(+)$1	1	84	92	9.8000
)).))).)	chr10:43492980-43493190(+)$1	1	177	185	10.5000
))).....	chrM:12107-12350(+)$1	1	18	26	13.3000
((....))	chr5:140090781-140090996(+)$1	1	82	90	11.2000
((.(((((	chr5:140105664-140105891(+)$1	1	6	14	10.7000
(((.....	chr13:41634760-41634980(-)$1	1	63	71	17.3000
......))	chr6:76735915-76736142(-)$1	1	13	21	13.8000
))))))).	chr1:45187465-45187674(-)$1	1	106	114	10.7000
))))))))	chr1:17066912-17067140(+)$1	1	136	144	17.3000
((......	chr17:8125449-8125688(-)$1	1	163	171	10.9000
.)))))).	chrX:16185864-16186100(-)$1	1	213	221	9.6000
(((..(((	chr19:45981798-45982021(-)$1	1	66	74	10.0000
.))))...	chr21:42006116-42006339(-)$1	1	196	204	13.9000
........	chr11:109641727-109641935(-)$1	1	195	203	17.3000
))))))))	chrM:12180-12398(+)$1	1	75	83	14.3000
((((((..	chr5:180692576-180692792(+)$1	1	38	46	17.3000
(((.....	chr13:41634780-41635001(-)$1	1	84	92	17.3000
))))....	chr10:43492990-43493201(+)$1	1	200	208	13.6000
((......	chr5:134259680-134259904(+)$1	1	87	95	14.2000
........	chr17:8125488-8125719(-)$1	1	194	202	10.9000
))))))))	chr1:45187452-45187665(-)$1	1	97	105	10.7000
)((((...	chr1:94313076-94313318(+)$1	1	79	87	9.9000
))))))))	chr1:16993315-16993535(-)$1	1	130	138	17.3000
.((.((((	chr19:14280678-14280944(-)$1	1	92	100	10.1000
((((.(((	chr18:2716889-2717121(+)$1	1	108	116	10.5000
......))	chr19:45981771-45981975(-)$1	1	20	28	10.0000
((......	chr1:45242081-45242307(+)$1	1	20	28	10.8000
.(((((((	chr7:103029305-103029514(-)$1	1	3	11	10.4000
((....))	chr5:140090800-140091031(+)$1	1	63	71	11.2000
((((...(	chr12:133451183-133451460(-)$1	1	15	23	10.3000
))))))))	chrM:12176-12380(+)$1	1	79	87	14.3000
.....(((	chr7:103029314-103029525(-)$1	1	14	22	10.4000
.)))).))	chr11:75115118-75115352(+)$1	1	178	186	17.3000
))).....	chrM:12060-12299(+)$1	1	65	73	13.3000
.)))....	chr15:66069976-66070236(-)$1	1	202	210	12.5000
..(((.((	chr16:18801528-18801755(-)$1	1	22	30	10.8000

#PSSM
U : 0.54	u : 0.30	A : 0.10	G : 0.04	C : 0.02	
G : 0.54	g : 0.30	U : 0.16	
G : 0.70	g : 0.27	C : 0.02	
U : 0.50	u : 0.25	C : 0.16	G : 0.06	a : 0.02	
U : 0.60	u : 0.25	C : 0.10	G : 0.02	c : 0.02	
U : 0.60	u : 0.23	G : 0.08	g : 0.04	C : 0.04	
U : 0.60	u : 0.21	C : 0.06	G : 0.06	c : 0.06	
C : 0.52	c : 0.19	A : 0.10	U : 0.06	G : 0.04	g : 0.04	u : 0.04	

#score	632.0000000000001
#seq	50
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_CDS_m1_run1.nuc.txt

#NT
UGCUG	chr13:46725029-46725307(-)$1	278	163	168	15.0000
UGCUG	chr1:155289302-155289540(+)$1	238	145	150	15.0000
UGCUG	chr12:109071946-109072180(-)$1	234	62	67	15.0000
UGCUG	chr22:29695644-29695930(+)$1	286	202	207	15.0000
UGCUG	chr7:5567603-5567830(-)$1	227	104	109	15.0000
UGCUG	chr1:173456773-173457030(+)$1	257	247	252	15.0000
UGCUG	chr11:129939694-129940052(+)$1	358	230	235	15.0000
UGCUG	chr16:30080122-30080368(+)$1	246	88	93	15.0000
UGCUG	chr8:11667234-11667459(+)$1	225	105	110	15.0000
UGCUG	chr6:34741174-34741435(+)$1	261	236	241	15.0000
UGCUG	chr18:55274780-55274998(-)$1	218	157	162	15.0000
UGCUG	chr11:314190-314439(+)$1	249	8	13	15.0000
UGCUG	chr9:140136911-140137155(+)$1	244	46	51	15.0000
UGCUG	chr3:49062457-49062686(-)$1	229	63	68	15.0000
UGCUG	chr14:100835341-100835615(-)$1	274	32	37	15.0000
UGCUG	chr10:126092264-126092533(-)$1	269	261	266	15.0000
UGCUG	chr6:26217167-26217387(+)$1	220	17	22	15.0000
UGCUG	chr11:314086-314339(+)$1	253	112	117	15.0000
UGCUG	chr21:35284492-35284732(-)$1	240	82	87	15.0000
UGCUG	chr12:131357556-131357775(+)$1	219	133	138	15.0000
UGCUG	chr1:45218703-45218961(+)$1	258	242	247	15.0000
UGCUG	chr19:12910913-12911166(-)$1	253	4	9	15.0000
UGCUG	chr6:41756883-41757140(+)$1	257	113	118	15.0000
UGCUG	chr11:118965860-118966144(-)$1	284	140	145	15.0000
UGCUG	chr1:8926424-8926652(-)$1	228	121	126	15.0000
UGCUG	chr1:226109818-226110106(-)$1	288	274	279	15.0000
UGCUG	chr6:30691375-30691622(+)$1	247	204	209	15.0000
UGCUG	chr10:106019382-106019655(+)$1	273	234	239	15.0000
UGCUG	chr1:182353655-182353938(-)$1	283	215	220	15.0000
UGCUG	chr1:8925402-8925641(-)$1	239	109	114	15.0000
UGCUG	chr2:98264445-98264676(+)$1	231	152	157	15.0000
UGCUG	chr17:61655780-61656026(+)$1	246	0	5	15.0000
UGCUG	chr19:4670112-4670355(-)$1	243	214	219	15.0000
UGCUG	chr6:43024050-43024282(-)$1	232	41	46	15.0000
UGCUG	chr6:37138811-37139084(+)$1	273	123	128	15.0000
ugcug	chr9:35059654-35059899(-)$1	245	16	21	15.0000
UGCUG	chr7:75687186-75687408(+)$1	222	39	44	15.0000
UGCUG	chr16:85840243-85840564(+)$1	321	160	165	15.0000
UGCUG	chr3:53269026-53269283(-)$1	257	110	115	15.0000
UGCUG	chr5:43294078-43294317(-)$1	239	165	170	15.0000
UGCUG	chr22:24963981-24964240(+)$1	259	70	75	15.0000
UGCUG	chr19:59056223-59056464(+)$1	241	82	87	15.0000
UGCUG	chr10:5488552-5488844(+)$1	292	2	7	15.0000
UGCUG	chr16:227296-227529(+)$1	233	1	6	15.0000
UGCUG	chr1:156100408-156100665(+)$1	257	61	66	15.0000
UGCUG	chrX:47444235-47444472(+)$1	237	12	17	15.0000
UGCUG	chr18:55274705-55274953(-)$1	248	112	117	15.0000
UGCUG	chr16:29706105-29706373(+)$1	268	155	160	15.0000

#otherMatches

#Struct PSSM
a[eee	chr11:122929263-122929504(-)$1	241	109	114	15.0000
iiiii	chr13:46725029-46725307(-)$1	278	163	168	15.0000
gggge	chr1:155289302-155289540(+)$1	238	145	150	15.0000
f[ccc	chr12:109071946-109072180(-)$1	234	62	67	15.0000
:dddd	chr22:29695644-29695930(+)$1	286	202	207	15.0000
ddd]d	chr7:5567603-5567830(-)$1	227	104	109	15.0000
FFFFE	chr1:173456773-173457030(+)$1	257	247	252	15.0000
GGG}C	chr11:129939694-129940052(+)$1	358	230	235	15.0000
[eeee	chr16:30080122-30080368(+)$1	246	88	93	15.0000
ggggg	chr8:11667234-11667459(+)$1	225	105	110	15.0000
_EEEE	chr6:34741174-34741435(+)$1	261	236	241	15.0000
cnnnn	chr18:55274780-55274998(-)$1	218	157	162	15.0000
iiiii	chr11:314190-314439(+)$1	249	8	13	15.0000
hhhh[	chr9:140136911-140137155(+)$1	244	46	51	15.0000
ellle	chr3:49062457-49062686(-)$1	229	63	68	15.0000
FFBBE	chr14:100835341-100835615(-)$1	274	32	37	15.0000
GGGG:	chr10:126092264-126092533(-)$1	269	261	266	15.0000
epppp	chr6:26217167-26217387(+)$1	220	17	22	15.0000
iiiii	chr11:314086-314339(+)$1	253	112	117	15.0000
ggggb	chr21:35284492-35284732(-)$1	240	82	87	15.0000
::::f	chr12:131357556-131357775(+)$1	219	133	138	15.0000
iEEEE	chr1:45218703-45218961(+)$1	258	242	247	15.0000
:::EE	chr19:12910913-12911166(-)$1	253	4	9	15.0000
{BBDD	chr6:41756883-41757140(+)$1	257	113	118	15.0000
{EEEE	chr11:118965860-118966144(-)$1	284	140	145	15.0000
cccdd	chr1:8926424-8926652(-)$1	228	121	126	15.0000
eeeee	chr1:226109818-226110106(-)$1	288	274	279	15.0000
ndddd	chr6:30691375-30691622(+)$1	247	204	209	15.0000
bb!!d	chr10:106019382-106019655(+)$1	273	234	239	15.0000
iiiii	chr1:182353655-182353938(-)$1	283	215	220	15.0000
!ccca	chr1:8925402-8925641(-)$1	239	109	114	15.0000
ffff:	chr2:98264445-98264676(+)$1	231	152	157	15.0000
:bboo	chr17:61655780-61656026(+)$1	246	0	5	15.0000
EEEYY	chr19:4670112-4670355(-)$1	243	214	219	15.0000
ggggF	chr6:43024050-43024282(-)$1	232	41	46	15.0000
CCCPP	chr6:37138811-37139084(+)$1	273	123	128	15.0000
oooee	chr9:35059654-35059899(-)$1	245	16	21	15.0000
]dddd	chr7:75687186-75687408(+)$1	222	39	44	15.0000
dddda	chr16:85840243-85840564(+)$1	321	160	165	15.0000
3dddd	chr3:53269026-53269283(-)$1	257	110	115	15.0000
cc]cc	chr5:43294078-43294317(-)$1	239	165	170	15.0000
CCCFF	chr22:24963981-24964240(+)$1	259	70	75	15.0000
2bb]b	chr19:59056223-59056464(+)$1	241	82	87	15.0000
EEEdd	chr10:5488552-5488844(+)$1	292	2	7	15.0000
:BB{C	chr16:227296-227529(+)$1	233	1	6	15.0000
mmmmb	chr1:156100408-156100665(+)$1	257	61	66	15.0000
FFFFF	chrX:47444235-47444472(+)$1	237	12	17	15.0000
cnnnn	chr18:55274705-55274953(-)$1	248	112	117	15.0000
:bbdd	chr16:29706105-29706373(+)$1	268	155	160	15.0000

#DB
(.(((	chr11:122929263-122929504(-)$1	1	109	114	15.0000
(((((	chr13:46725029-46725307(-)$1	1	163	168	15.0000
)))))	chr1:155289302-155289540(+)$1	1	145	150	15.0000
(.(((	chr12:109071946-109072180(-)$1	1	62	67	15.0000
.((((	chr22:29695644-29695930(+)$1	1	202	207	15.0000
))).)	chr7:5567603-5567830(-)$1	1	104	109	15.0000
)))))	chr1:173456773-173457030(+)$1	1	247	252	15.0000
))).)	chr11:129939694-129940052(+)$1	1	230	235	15.0000
.((((	chr16:30080122-30080368(+)$1	1	88	93	15.0000
(((((	chr8:11667234-11667459(+)$1	1	105	110	15.0000
.))))	chr6:34741174-34741435(+)$1	1	236	241	15.0000
(....	chr18:55274780-55274998(-)$1	1	157	162	15.0000
(((((	chr11:314190-314439(+)$1	1	8	13	15.0000
((((.	chr9:140136911-140137155(+)$1	1	46	51	15.0000
(...)	chr3:49062457-49062686(-)$1	1	63	68	15.0000
(((((	chr14:100835341-100835615(-)$1	1	32	37	15.0000
)))).	chr10:126092264-126092533(-)$1	1	261	266	15.0000
(....	chr6:26217167-26217387(+)$1	1	17	22	15.0000
(((((	chr11:314086-314339(+)$1	1	112	117	15.0000
(((((	chr21:35284492-35284732(-)$1	1	82	87	15.0000
....(	chr12:131357556-131357775(+)$1	1	133	138	15.0000
)))))	chr1:45218703-45218961(+)$1	1	242	247	15.0000
...((	chr19:12910913-12911166(-)$1	1	4	9	15.0000
.((((	chr6:41756883-41757140(+)$1	1	113	118	15.0000
.((((	chr11:118965860-118966144(-)$1	1	140	145	15.0000
(((((	chr1:8926424-8926652(-)$1	1	121	126	15.0000
)))))	chr1:226109818-226110106(-)$1	1	274	279	15.0000
.))))	chr6:30691375-30691622(+)$1	1	204	209	15.0000
((..(	chr10:106019382-106019655(+)$1	1	234	239	15.0000
(((((	chr1:182353655-182353938(-)$1	1	215	220	15.0000
.((((	chr1:8925402-8925641(-)$1	1	109	114	15.0000
)))).	chr2:98264445-98264676(+)$1	1	152	157	15.0000
.((..	chr17:61655780-61656026(+)$1	1	0	5	15.0000
)))..	chr19:4670112-4670355(-)$1	1	214	219	15.0000
))))(	chr6:43024050-43024282(-)$1	1	41	46	15.0000
(((..	chr6:37138811-37139084(+)$1	1	123	128	15.0000
...))	chr9:35059654-35059899(-)$1	1	16	21	15.0000
.))))	chr7:75687186-75687408(+)$1	1	39	44	15.0000
))))(	chr16:85840243-85840564(+)$1	1	160	165	15.0000
.))))	chr3:53269026-53269283(-)$1	1	110	115	15.0000
)).))	chr5:43294078-43294317(-)$1	1	165	170	15.0000
(((((	chr22:24963981-24964240(+)$1	1	70	75	15.0000
.)).)	chr19:59056223-59056464(+)$1	1	82	87	15.0000
(((((	chr10:5488552-5488844(+)$1	1	2	7	15.0000
.((.(	chr16:227296-227529(+)$1	1	1	6	15.0000
....)	chr1:156100408-156100665(+)$1	1	61	66	15.0000
(((((	chrX:47444235-47444472(+)$1	1	12	17	15.0000
(....	chr18:55274705-55274953(-)$1	1	112	117	15.0000
.((((	chr16:29706105-29706373(+)$1	1	155	160	15.0000

#PSSM
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	

#score	735.0000000000001
#seq	49
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_CDS_m2_run1.nuc.txt

#NT
UGAAGAA	chr2:145157097-145157406(-)$1	309	92	99	17.2500
UGAACAA	chr1:46073433-46073660(+)$1	227	139	146	13.1153
UGGAGAA	chr17:27614505-27614764(-)$1	259	55	62	12.8269
UGAGGAA	chr2:152320878-152321116(+)$1	238	105	112	13.1153
UGAAGAC	chr1:214813752-214814014(+)$1	262	96	103	13.3076
UGAAGAA	chr1:203766895-203767175(+)$1	280	84	91	17.2500
UGAAGAG	chr3:42680266-42680503(+)$1	237	115	122	13.3076
UGAUGAA	chr1:155447776-155448047(-)$1	271	186	193	13.1153
UGAUGAA	chr2:55252674-55252929(-)$1	255	142	149	13.1153
GGAAGAA	chr3:42679728-42679994(+)$1	266	97	104	13.6923
UGAAGAC	chr1:214813814-214814104(+)$1	290	34	41	13.3076
UGAAGAA	chr21:38537785-38538081(+)$1	296	242	249	17.2500
UGAAGAG	chr11:65349316-65349628(+)$1	312	71	78	13.3076
UCAAGAA	chr6:136596694-136596941(-)$1	247	155	162	12.9230
UGAAAAA	chr1:40703500-40703820(+)$1	320	88	95	13.1153
UGAAGAA	chr1:203766801-203767061(+)$1	260	178	185	17.2500
UGAAGAA	chr2:109380765-109381053(+)$1	288	123	130	17.2500
UGCAGAA	chr11:65349429-65349694(+)$1	265	237	244	12.8269
UGAAGAA	chr1:241797240-241797475(-)$1	235	215	222	17.2500
UGAAGAG	chr2:55253239-55253483(-)$1	244	48	55	13.3076
AGAAGAA	chr2:55253460-55253726(-)$1	266	11	18	13.6923
AGAAGAA	chr15:40916261-40916542(+)$1	281	44	51	13.6923
AGAAGAA	chr3:160143809-160144057(+)$1	248	66	73	13.6923
UGAAGAC	chr1:197072614-197072896(-)$1	282	130	137	13.3076
UGAAGAA	chr11:5423936-5424208(-)$1	272	233	240	17.2500
UGAACAA	chr1:46073460-46073739(+)$1	279	112	119	13.1153
GGAAGAA	chr6:87965634-87965938(+)$1	304	71	78	13.6923
UGAAAAA	chr2:55253744-55254018(-)$1	274	262	269	13.1153
AGAAGAA	chr2:170493659-170493936(+)$1	277	7	14	13.6923
UGAUGAA	chr1:40702444-40702703(+)$1	259	26	33	13.1153
UGAAGAA	chr6:83877574-83877875(-)$1	301	186	193	17.2500
UGAAGAA	chr6:4032031-4032329(+)$1	298	151	158	17.2500
UGGAGAA	chr2:152319594-152319919(+)$1	325	110	117	12.8269
UCAAGAA	chr10:119043418-119043721(-)$1	303	117	124	12.9230
GGAAGAA	chr1:203768515-203768778(+)$1	263	44	51	13.6923
UGAGGAA	chr2:55253283-55253618(-)$1	335	0	7	13.1153
UUAAGAA	chr17:29161370-29161639(+)$1	269	57	64	12.8269
UGAAGAA	chr2:55252344-55252637(-)$1	293	164	171	17.2500
UGAAGAA	chr3:37368521-37368768(+)$1	247	57	64	17.2500
Ugaagau	chr8:17814953-17815234(+)$1	281	144	151	13.2115
UGAAGAA	chr2:55252254-55252510(-)$1	256	37	44	17.2500
UGAGGAA	chr15:40916935-40917211(+)$1	276	11	18	13.1153
UGAAGAU	chr17:29162617-29162880(+)$1	263	104	111	13.2115
GGAAGAA	chr2:55252969-55253247(-)$1	278	34	41	13.6923
UAAAGAA	chr1:111490755-111491014(-)$1	259	45	52	12.9230
GGAAGAA	chr22:19431811-19432082(-)$1	271	2	9	13.6923
UAAAGAA	chr2:152321203-152321518(+)$1	315	76	83	12.9230
UGAACAA	chr2:152319888-152320131(+)$1	243	27	34	13.1153
AGAAGAA	chr6:64421398-64421666(+)$1	268	249	256	13.6923
UGAAAAA	chr2:170493740-170494003(+)$1	263	144	151	13.1153
UGCAGAA	chr2:109379920-109380173(+)$1	253	53	60	12.8269

#otherMatches

#Struct PSSM
d::::::	chr1:214814853-214815099(+)$1	246	103	110	17.2500
ccc[bb!	chr2:145157097-145157406(-)$1	309	92	99	17.2500
ggg[aqq	chr1:46073433-46073660(+)$1	227	139	146	13.1153
FFF::ee	chr17:27614505-27614764(-)$1	259	55	62	12.8269
eeee:::	chr2:152320878-152321116(+)$1	238	105	112	13.1153
g!!ccc!	chr1:214813752-214814014(+)$1	262	96	103	13.3076
:eeeeel	chr1:203766895-203767175(+)$1	280	84	91	17.2500
qqqqqqc	chr3:42680266-42680503(+)$1	237	115	122	13.3076
a!!dddd	chr1:155447776-155448047(-)$1	271	186	193	13.1153
ddd:::f	chr2:55252674-55252929(-)$1	255	142	149	13.1153
CCC:::e	chr3:42679728-42679994(+)$1	266	97	104	13.6923
g!!ccc!	chr1:214813814-214814104(+)$1	290	34	41	13.3076
oobb333	chr21:38537785-38538081(+)$1	296	242	249	17.2500
ffffnnn	chr11:65349316-65349628(+)$1	312	71	78	13.3076
fffff22	chr6:136596694-136596941(-)$1	247	155	162	12.9230
dddnnnn	chr1:40703500-40703820(+)$1	320	88	95	13.1153
DD|||||	chr1:203766801-203767061(+)$1	260	178	185	17.2500
ddqqqqq	chr2:109380765-109381053(+)$1	288	123	130	17.2500
C}AZZZD	chr11:65349429-65349694(+)$1	265	237	244	12.8269
oeeeee2	chr1:241797240-241797475(-)$1	235	215	222	17.2500
GGGGGGe	chr2:55253239-55253483(-)$1	244	48	55	13.3076
fffff^^	chr2:55253460-55253726(-)$1	266	11	18	13.6923
BB:::::	chr15:40916261-40916542(+)$1	281	44	51	13.6923
c4444hh	chr3:160143809-160144057(+)$1	248	66	73	13.6923
ff:::::	chr1:197072614-197072896(-)$1	282	130	137	13.3076
d]bb22c	chr11:5423936-5424208(-)$1	272	233	240	17.2500
ggg[aqq	chr1:46073460-46073739(+)$1	279	112	119	13.1153
ff!!ddd	chr6:87965634-87965938(+)$1	304	71	78	13.6923
:::::::	chr2:55253744-55254018(-)$1	274	262	269	13.1153
FFFFF::	chr2:170493659-170493936(+)$1	277	7	14	13.6923
:::::::	chr1:40702444-40702703(+)$1	259	26	33	13.1153
FF:::::	chr6:83877574-83877875(-)$1	301	186	193	17.2500
dnnnnnd	chr6:4032031-4032329(+)$1	298	151	158	17.2500
ee$$$$$	chr2:152319594-152319919(+)$1	325	110	117	12.8269
DDD::::	chr10:119043418-119043721(-)$1	303	117	124	12.9230
{DDDDMM	chr1:203768515-203768778(+)$1	263	44	51	13.6923
FFFFFF:	chr2:55253283-55253618(-)$1	335	0	7	13.1153
ee:::::	chr17:29161370-29161639(+)$1	269	57	64	12.8269
mdddd22	chr2:55252344-55252637(-)$1	293	164	171	17.2500
:::::::	chr3:37368521-37368768(+)$1	247	57	64	17.2500
ggggggg	chr8:17814953-17815234(+)$1	281	144	151	13.2115
fff))))	chr2:55252254-55252510(-)$1	256	37	44	17.2500
dddd:::	chr15:40916935-40917211(+)$1	276	11	18	13.1153
ffffff:	chr17:29162617-29162880(+)$1	263	104	111	13.2115
EEEE:::	chr2:55252969-55253247(-)$1	278	34	41	13.6923
c::::::	chr1:111490755-111491014(-)$1	259	45	52	12.9230
::::::F	chr22:19431811-19432082(-)$1	271	2	9	13.6923
GG:::::	chr2:152321203-152321518(+)$1	315	76	83	12.9230
ccooooo	chr2:152319888-152320131(+)$1	243	27	34	13.1153
:::::::	chr6:64421398-64421666(+)$1	268	249	256	13.6923
dmmmmdd	chr2:170493740-170494003(+)$1	263	144	151	13.1153
eeee22c	chr2:109379920-109380173(+)$1	253	53	60	12.8269

#DB
)......	chr1:214814853-214815099(+)$1	1	103	110	17.2500
(((.((.	chr2:145157097-145157406(-)$1	1	92	99	17.2500
(((.(..	chr1:46073433-46073660(+)$1	1	139	146	13.1153
(((..((	chr17:27614505-27614764(-)$1	1	55	62	12.8269
))))...	chr2:152320878-152321116(+)$1	1	105	112	13.1153
(..(((.	chr1:214813752-214814014(+)$1	1	96	103	13.3076
.(((((.	chr1:203766895-203767175(+)$1	1	84	91	17.2500
......)	chr3:42680266-42680503(+)$1	1	115	122	13.3076
(..((((	chr1:155447776-155448047(-)$1	1	186	193	13.1153
)))...(	chr2:55252674-55252929(-)$1	1	142	149	13.1153
)))...(	chr3:42679728-42679994(+)$1	1	97	104	13.6923
(..(((.	chr1:214813814-214814104(+)$1	1	34	41	13.3076
..))...	chr21:38537785-38538081(+)$1	1	242	249	17.2500
((((...	chr11:65349316-65349628(+)$1	1	71	78	13.3076
)))))..	chr6:136596694-136596941(-)$1	1	155	162	12.9230
(((....	chr1:40703500-40703820(+)$1	1	88	95	13.1153
)).....	chr1:203766801-203767061(+)$1	1	178	185	17.2500
((.....	chr2:109380765-109381053(+)$1	1	123	130	17.2500
).)...)	chr11:65349429-65349694(+)$1	1	237	244	12.8269
.))))).	chr1:241797240-241797475(-)$1	1	215	222	17.2500
(((((((	chr2:55253239-55253483(-)$1	1	48	55	13.3076
(((((..	chr2:55253460-55253726(-)$1	1	11	18	13.6923
((.....	chr15:40916261-40916542(+)$1	1	44	51	13.6923
)....))	chr3:160143809-160144057(+)$1	1	66	73	13.6923
)).....	chr1:197072614-197072896(-)$1	1	130	137	13.3076
).))..)	chr11:5423936-5424208(-)$1	1	233	240	17.2500
(((.(..	chr1:46073460-46073739(+)$1	1	112	119	13.1153
((..(((	chr6:87965634-87965938(+)$1	1	71	78	13.6923
.......	chr2:55253744-55254018(-)$1	1	262	269	13.1153
(((((..	chr2:170493659-170493936(+)$1	1	7	14	13.6923
.......	chr1:40702444-40702703(+)$1	1	26	33	13.1153
((.....	chr6:83877574-83877875(-)$1	1	186	193	17.2500
(.....)	chr6:4032031-4032329(+)$1	1	151	158	17.2500
((.....	chr2:152319594-152319919(+)$1	1	110	117	12.8269
)))....	chr10:119043418-119043721(-)$1	1	117	124	12.9230
.((((..	chr1:203768515-203768778(+)$1	1	44	51	13.6923
((((((.	chr2:55253283-55253618(-)$1	1	0	7	13.1153
)).....	chr17:29161370-29161639(+)$1	1	57	64	12.8269
.))))..	chr2:55252344-55252637(-)$1	1	164	171	17.2500
.......	chr3:37368521-37368768(+)$1	1	57	64	17.2500
)))))))	chr8:17814953-17815234(+)$1	1	144	151	13.2115
(((....	chr2:55252254-55252510(-)$1	1	37	44	17.2500
))))...	chr15:40916935-40917211(+)$1	1	11	18	13.1153
)))))).	chr17:29162617-29162880(+)$1	1	104	111	13.2115
((((...	chr2:55252969-55253247(-)$1	1	34	41	13.6923
)......	chr1:111490755-111491014(-)$1	1	45	52	12.9230
......(	chr22:19431811-19432082(-)$1	1	2	9	13.6923
((.....	chr2:152321203-152321518(+)$1	1	76	83	12.9230
((.....	chr2:152319888-152320131(+)$1	1	27	34	13.1153
.......	chr6:64421398-64421666(+)$1	1	249	256	13.6923
(....))	chr2:170493740-170494003(+)$1	1	144	151	13.1153
))))..)	chr2:109379920-109380173(+)$1	1	53	60	12.8269

#PSSM
U : 0.80	G : 0.09	A : 0.09	
G : 0.88	C : 0.03	A : 0.03	U : 0.01	g : 0.01	
A : 0.90	G : 0.03	C : 0.03	a : 0.01	
A : 0.86	G : 0.05	U : 0.05	a : 0.01	
G : 0.86	C : 0.05	A : 0.05	g : 0.01	
A : 0.98	a : 0.01	
A : 0.84	C : 0.05	G : 0.05	u : 0.01	U : 0.01	

#score	740.653846153847
#seq	52
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_transcript_m2_run2.nuc.txt

#NT
GUG	chr18:9518118-9518329(-)$1	211	54	57	9.0000
GUG	chr2:207026945-207027155(+)$1	210	48	51	9.0000
GUG	chr13:92001011-92001231(+)$1	220	47	50	9.0000
GUG	chr1:2441474-2441745(-)$1	271	24	27	9.0000
gUG	chr4:53578739-53578954(+)$1	215	15	18	9.0000
GUG	chr17:76120135-76120380(-)$1	245	48	51	9.0000
GUG	chr22:49947065-49947306(-)$1	241	31	34	9.0000
GUG	chr14:105914522-105914766(+)$1	244	23	26	9.0000
GUG	chr3:186502541-186502753(+)$1	212	45	48	9.0000
GUG	chr1:1690356-1690602(-)$1	246	2	5	9.0000
GUG	chr21:44478964-44479224(-)$1	260	12	15	9.0000
GUG	chr2:97554462-97554718(-)$1	256	34	37	9.0000
GUG	chr1:153912135-153912458(-)$1	323	16	19	9.0000
GUG	chr7:128478502-128478763(+)$1	261	0	3	9.0000
GUG	chr5:111497168-111497374(+)$1	206	8	11	9.0000
GUG	chr16:588589-588844(+)$1	255	90	93	9.0000
GUG	chr21:46285266-46285517(-)$1	251	56	59	9.0000
GUG	chr6:32942094-32942379(+)$1	285	82	85	9.0000
GUG	chr8:104397176-104397389(+)$1	213	7	10	9.0000
GUG	chr10:70514869-70515082(+)$1	213	69	72	9.0000
GUG	chr14:95999817-96000021(-)$1	204	40	43	9.0000
GUG	chr1:2198861-2199160(+)$1	299	26	29	9.0000
GUG	chr16:88555784-88556035(+)$1	251	58	61	9.0000
GUG	chr16:1370679-1370937(+)$1	258	19	22	9.0000
GUG	chr22:20094326-20094588(+)$1	262	10	13	9.0000
GUG	chr16:88570745-88571007(+)$1	262	121	124	9.0000
GUG	chr19:3684151-3684398(-)$1	247	65	68	9.0000
GUG	chr13:111562985-111563276(-)$1	291	30	33	9.0000
GUG	chr12:54675756-54675969(+)$1	213	14	17	9.0000
GUG	chr22:39711146-39711363(-)$1	217	2	5	9.0000
GUG	chr1:173835360-173835566(-)$1	206	50	53	9.0000
GUG	chr16:85664381-85664666(+)$1	285	101	104	9.0000
GUG	chr20:55982467-55982711(+)$1	244	1	4	9.0000
GUG	chr22:22049304-22049557(+)$1	253	26	29	9.0000
GUG	chr6:33264775-33265056(-)$1	281	66	69	9.0000
GUG	chr7:128036641-128036921(-)$1	280	15	18	9.0000
GUG	chr9:136217657-136217871(+)$1	214	85	88	9.0000
GUG	chr11:93465455-93465659(-)$1	204	37	40	9.0000
GUG	chr22:39709743-39709945(-)$1	202	5	8	9.0000
GUG	chr19:2197665-2197902(+)$1	237	13	16	9.0000
GUG	chr11:118962962-118963202(+)$1	240	81	84	9.0000
GUG	chrX:41201598-41201914(+)$1	316	138	141	9.0000
GUG	chr20:32246208-32246522(-)$1	314	14	17	9.0000
GUG	chr7:157009403-157009690(+)$1	287	20	23	9.0000
GUG	chr16:89023417-89023693(-)$1	276	43	46	9.0000
GUG	chr22:49963979-49964223(-)$1	244	4	7	9.0000
GUG	chr19:802359-802641(+)$1	282	23	26	9.0000
gug	chr2:234184314-234184551(+)$1	237	27	30	9.0000
GUG	chr7:150829028-150829295(+)$1	267	38	41	9.0000
GUG	chr17:74041027-74041280(-)$1	253	7	10	9.0000
GUG	chr12:133138868-133139110(+)$1	242	38	41	9.0000
GUG	chr11:62621990-62622203(-)$1	213	69	72	9.0000
gug	chr3:169437875-169438081(-)$1	206	0	3	9.0000
GUG	chr6:33177535-33177812(+)$1	277	165	168	9.0000
GUG	chrX:151124205-151124451(-)$1	246	24	27	9.0000
GUG	chr2:97533517-97533802(-)$1	285	65	68	9.0000
gug	chrX:71596807-71597023(-)$1	216	34	37	9.0000
GUG	chr17:16342759-16342975(+)$1	216	11	14	9.0000
gug	chr6:31728837-31729090(+)$1	253	21	24	9.0000
GUG	chr17:76120371-76120633(-)$1	262	29	32	9.0000
GUG	chr16:2113987-2114315(+)$1	328	23	26	9.0000
GUG	chr22:50027373-50027604(-)$1	231	70	73	9.0000
GUG	chr14:74206823-74207111(-)$1	288	17	20	9.0000
GUG	chr22:50018148-50018375(-)$1	227	30	33	9.0000
GUG	chr16:1500532-1500793(-)$1	261	34	37	9.0000
gug	chr1:2200462-2200700(+)$1	238	21	24	9.0000
GUG	chr22:38897139-38897399(-)$1	260	128	131	9.0000
GUG	chr22:19967981-19968223(-)$1	242	3	6	9.0000
GUG	chr6:4953981-4954245(+)$1	264	15	18	9.0000
GUG	chr7:98479287-98479498(+)$1	211	39	42	9.0000
GUG	chr12:6619610-6619814(+)$1	204	56	59	9.0000
GUG	chr16:88567985-88568223(+)$1	238	0	3	9.0000
GUG	chr2:97534693-97534932(-)$1	239	232	235	9.0000
GUG	chr16:89042616-89042874(-)$1	258	6	9	9.0000
GUG	chr12:133076224-133076467(+)$1	243	8	11	9.0000
GUG	chr19:1408515-1408750(+)$1	235	31	34	9.0000
GUG	chr19:18548149-18548380(-)$1	231	9	12	9.0000
GUG	chr8:145109481-145109731(-)$1	250	17	20	9.0000
gug	chr1:14450627-14450832(-)$1	205	62	65	9.0000
GUG	chr19:2337732-2337998(+)$1	266	11	14	9.0000
GUG	chr11:61583061-61583370(+)$1	309	4	7	9.0000
GUG	chr11:64535630-64535884(-)$1	254	6	9	9.0000
GUG	chr1:155889668-155889878(-)$1	210	61	64	9.0000
GUG	chr1:47728634-47728937(-)$1	303	9	12	9.0000
GUG	chr3:33431768-33432016(-)$1	248	165	168	9.0000
GUG	chr19:50000899-50001117(+)$1	218	31	34	9.0000
GUG	chr7:23508066-23508328(-)$1	262	83	86	9.0000
GUG	chr18:47017932-47018136(-)$1	204	21	24	9.0000
GUG	chr19:3697808-3698051(-)$1	243	25	28	9.0000
GUG	chr9:137241831-137242078(+)$1	247	78	81	9.0000
GUG	chr16:85676524-85676777(+)$1	253	15	18	9.0000
GUG	chr5:137688355-137688615(+)$1	260	10	13	9.0000
GUG	chr19:1433782-1434044(+)$1	262	30	33	9.0000
GUG	chr17:7809396-7809668(+)$1	272	62	65	9.0000
GUG	chr16:85654240-85654473(+)$1	233	24	27	9.0000
GUG	chr17:37007660-37007934(-)$1	274	54	57	9.0000
GUG	chr16:71792216-71792420(-)$1	204	13	16	9.0000

#otherMatches

#Struct PSSM
cc[	chr3:101481030-101481269(+)$1	239	177	180	9.0000
ddr	chr18:9518118-9518329(-)$1	211	54	57	9.0000
iic	chr2:207026945-207027155(+)$1	210	48	51	9.0000
ddd	chr13:92001011-92001231(+)$1	220	47	50	9.0000
f]d	chr1:2441474-2441745(-)$1	271	24	27	9.0000
[cc	chr4:53578739-53578954(+)$1	215	15	18	9.0000
nnc	chr17:76120135-76120380(-)$1	245	48	51	9.0000
ddd	chr22:49947065-49947306(-)$1	241	31	34	9.0000
ccc	chr14:105914522-105914766(+)$1	244	23	26	9.0000
fff	chr3:186502541-186502753(+)$1	212	45	48	9.0000
fff	chr1:1690356-1690602(-)$1	246	2	5	9.0000
dd:	chr21:44478964-44479224(-)$1	260	12	15	9.0000
]a:	chr2:97554462-97554718(-)$1	256	34	37	9.0000
qqe	chr1:153912135-153912458(-)$1	323	16	19	9.0000
FFF	chr7:128478502-128478763(+)$1	261	0	3	9.0000
D{D	chr5:111497168-111497374(+)$1	206	8	11	9.0000
e]d	chr16:588589-588844(+)$1	255	90	93	9.0000
ggg	chr21:46285266-46285517(-)$1	251	56	59	9.0000
ff[	chr6:32942094-32942379(+)$1	285	82	85	9.0000
eee	chr8:104397176-104397389(+)$1	213	7	10	9.0000
"ee	chr10:70514869-70515082(+)$1	213	69	72	9.0000
!dd	chr14:95999817-96000021(-)$1	204	40	43	9.0000
d[e	chr1:2198861-2199160(+)$1	299	26	29	9.0000
qqq	chr16:88555784-88556035(+)$1	251	58	61	9.0000
eee	chr16:1370679-1370937(+)$1	258	19	22	9.0000
ppp	chr22:20094326-20094588(+)$1	262	10	13	9.0000
dd[	chr16:88570745-88571007(+)$1	262	121	124	9.0000
d]e	chr19:3684151-3684398(-)$1	247	65	68	9.0000
cc"	chr13:111562985-111563276(-)$1	291	30	33	9.0000
bb[	chr12:54675756-54675969(+)$1	213	14	17	9.0000
ggg	chr22:39711146-39711363(-)$1	217	2	5	9.0000
II:	chr1:173835360-173835566(-)$1	206	50	53	9.0000
CCC	chr16:85664381-85664666(+)$1	285	101	104	9.0000
EEE	chr20:55982467-55982711(+)$1	244	1	4	9.0000
:dd	chr22:22049304-22049557(+)$1	253	26	29	9.0000
ddd	chr6:33264775-33265056(-)$1	281	66	69	9.0000
EEK	chr7:128036641-128036921(-)$1	280	15	18	9.0000
mmc	chr9:136217657-136217871(+)$1	214	85	88	9.0000
fff	chr11:93465455-93465659(-)$1	204	37	40	9.0000
::C	chr22:39709743-39709945(-)$1	202	5	8	9.0000
bb!	chr19:2197665-2197902(+)$1	237	13	16	9.0000
ubb	chr11:118962962-118963202(+)$1	240	81	84	9.0000
mmb	chrX:41201598-41201914(+)$1	316	138	141	9.0000
sss	chr20:32246208-32246522(-)$1	314	14	17	9.0000
EEd	chr7:157009403-157009690(+)$1	287	20	23	9.0000
bb2	chr16:89023417-89023693(-)$1	276	43	46	9.0000
KFF	chr22:49963979-49964223(-)$1	244	4	7	9.0000
::A	chr19:802359-802641(+)$1	282	23	26	9.0000
NNG	chr2:234184314-234184551(+)$1	237	27	30	9.0000
qqe	chr7:150829028-150829295(+)$1	267	38	41	9.0000
ddd	chr17:74041027-74041280(-)$1	253	7	10	9.0000
ccm	chr12:133138868-133139110(+)$1	242	38	41	9.0000
fff	chr11:62621990-62622203(-)$1	213	69	72	9.0000
eee	chr3:169437875-169438081(-)$1	206	0	3	9.0000
d]e	chr6:33177535-33177812(+)$1	277	165	168	9.0000
A{D	chrX:151124205-151124451(-)$1	246	24	27	9.0000
22e	chr2:97533517-97533802(-)$1	285	65	68	9.0000
&&&	chrX:71596807-71597023(-)$1	216	34	37	9.0000
EE{	chr17:16342759-16342975(+)$1	216	11	14	9.0000
ddd	chr6:31728837-31729090(+)$1	253	21	24	9.0000
ggg	chr17:76120371-76120633(-)$1	262	29	32	9.0000
DDD	chr16:2113987-2114315(+)$1	328	23	26	9.0000
ggv	chr22:50027373-50027604(-)$1	231	70	73	9.0000
fnn	chr14:74206823-74207111(-)$1	288	17	20	9.0000
[bb	chr22:50018148-50018375(-)$1	227	30	33	9.0000
KKD	chr16:1500532-1500793(-)$1	261	34	37	9.0000
ddd	chr1:2200462-2200700(+)$1	238	21	24	9.0000
DDD	chr22:38897139-38897399(-)$1	260	128	131	9.0000
===	chr22:19967981-19968223(-)$1	242	3	6	9.0000
bb[	chr6:4953981-4954245(+)$1	264	15	18	9.0000
ggg	chr7:98479287-98479498(+)$1	211	39	42	9.0000
"cc	chr12:6619610-6619814(+)$1	204	56	59	9.0000
eee	chr16:88567985-88568223(+)$1	238	0	3	9.0000
GGG	chr2:97534693-97534932(-)$1	239	232	235	9.0000
g[a	chr16:89042616-89042874(-)$1	258	6	9	9.0000
[ff	chr12:133076224-133076467(+)$1	243	8	11	9.0000
lcc	chr19:1408515-1408750(+)$1	235	31	34	9.0000
bb$	chr19:18548149-18548380(-)$1	231	9	12	9.0000
C{D	chr8:145109481-145109731(-)$1	250	17	20	9.0000
fff	chr1:14450627-14450832(-)$1	205	62	65	9.0000
{EE	chr19:2337732-2337998(+)$1	266	11	14	9.0000
:::	chr11:61583061-61583370(+)$1	309	4	7	9.0000
EEE	chr11:64535630-64535884(-)$1	254	6	9	9.0000
ccc	chr1:155889668-155889878(-)$1	210	61	64	9.0000
eea	chr1:47728634-47728937(-)$1	303	9	12	9.0000
:::	chr3:33431768-33432016(-)$1	248	165	168	9.0000
=DD	chr19:50000899-50001117(+)$1	218	31	34	9.0000
:::	chr7:23508066-23508328(-)$1	262	83	86	9.0000
:JJ	chr18:47017932-47018136(-)$1	204	21	24	9.0000
ggg	chr19:3697808-3698051(-)$1	243	25	28	9.0000
c]c	chr9:137241831-137242078(+)$1	247	78	81	9.0000
QQG	chr16:85676524-85676777(+)$1	253	15	18	9.0000
DDD	chr5:137688355-137688615(+)$1	260	10	13	9.0000
CCC	chr19:1433782-1434044(+)$1	262	30	33	9.0000
iii	chr17:7809396-7809668(+)$1	272	62	65	9.0000
bbn	chr16:85654240-85654473(+)$1	233	24	27	9.0000
qq=	chr17:37007660-37007934(-)$1	274	54	57	9.0000
ccc	chr16:71792216-71792420(-)$1	204	13	16	9.0000

#DB
((.	chr3:101481030-101481269(+)$1	1	177	180	9.0000
((.	chr18:9518118-9518329(-)$1	1	54	57	9.0000
)))	chr2:207026945-207027155(+)$1	1	48	51	9.0000
)))	chr13:92001011-92001231(+)$1	1	47	50	9.0000
).)	chr1:2441474-2441745(-)$1	1	24	27	9.0000
.((	chr4:53578739-53578954(+)$1	1	15	18	9.0000
..)	chr17:76120135-76120380(-)$1	1	48	51	9.0000
(((	chr22:49947065-49947306(-)$1	1	31	34	9.0000
)))	chr14:105914522-105914766(+)$1	1	23	26	9.0000
(((	chr3:186502541-186502753(+)$1	1	45	48	9.0000
(((	chr1:1690356-1690602(-)$1	1	2	5	9.0000
)).	chr21:44478964-44479224(-)$1	1	12	15	9.0000
.).	chr2:97554462-97554718(-)$1	1	34	37	9.0000
..)	chr1:153912135-153912458(-)$1	1	16	19	9.0000
(((	chr7:128478502-128478763(+)$1	1	0	3	9.0000
(.(	chr5:111497168-111497374(+)$1	1	8	11	9.0000
).)	chr16:588589-588844(+)$1	1	90	93	9.0000
(((	chr21:46285266-46285517(-)$1	1	56	59	9.0000
((.	chr6:32942094-32942379(+)$1	1	82	85	9.0000
(((	chr8:104397176-104397389(+)$1	1	7	10	9.0000
.((	chr10:70514869-70515082(+)$1	1	69	72	9.0000
.((	chr14:95999817-96000021(-)$1	1	40	43	9.0000
(.(	chr1:2198861-2199160(+)$1	1	26	29	9.0000
...	chr16:88555784-88556035(+)$1	1	58	61	9.0000
)))	chr16:1370679-1370937(+)$1	1	19	22	9.0000
...	chr22:20094326-20094588(+)$1	1	10	13	9.0000
((.	chr16:88570745-88571007(+)$1	1	121	124	9.0000
).)	chr19:3684151-3684398(-)$1	1	65	68	9.0000
((.	chr13:111562985-111563276(-)$1	1	30	33	9.0000
((.	chr12:54675756-54675969(+)$1	1	14	17	9.0000
(((	chr22:39711146-39711363(-)$1	1	2	5	9.0000
((.	chr1:173835360-173835566(-)$1	1	50	53	9.0000
)))	chr16:85664381-85664666(+)$1	1	101	104	9.0000
(((	chr20:55982467-55982711(+)$1	1	1	4	9.0000
.((	chr22:22049304-22049557(+)$1	1	26	29	9.0000
)))	chr6:33264775-33265056(-)$1	1	66	69	9.0000
((.	chr7:128036641-128036921(-)$1	1	15	18	9.0000
..)	chr9:136217657-136217871(+)$1	1	85	88	9.0000
)))	chr11:93465455-93465659(-)$1	1	37	40	9.0000
..(	chr22:39709743-39709945(-)$1	1	5	8	9.0000
((.	chr19:2197665-2197902(+)$1	1	13	16	9.0000
.))	chr11:118962962-118963202(+)$1	1	81	84	9.0000
..)	chrX:41201598-41201914(+)$1	1	138	141	9.0000
...	chr20:32246208-32246522(-)$1	1	14	17	9.0000
(((	chr7:157009403-157009690(+)$1	1	20	23	9.0000
)).	chr16:89023417-89023693(-)$1	1	43	46	9.0000
.((	chr22:49963979-49964223(-)$1	1	4	7	9.0000
..(	chr19:802359-802641(+)$1	1	23	26	9.0000
..(	chr2:234184314-234184551(+)$1	1	27	30	9.0000
..)	chr7:150829028-150829295(+)$1	1	38	41	9.0000
(((	chr17:74041027-74041280(-)$1	1	7	10	9.0000
((.	chr12:133138868-133139110(+)$1	1	38	41	9.0000
)))	chr11:62621990-62622203(-)$1	1	69	72	9.0000
(((	chr3:169437875-169438081(-)$1	1	0	3	9.0000
).)	chr6:33177535-33177812(+)$1	1	165	168	9.0000
(.(	chrX:151124205-151124451(-)$1	1	24	27	9.0000
..)	chr2:97533517-97533802(-)$1	1	65	68	9.0000
...	chrX:71596807-71597023(-)$1	1	34	37	9.0000
((.	chr17:16342759-16342975(+)$1	1	11	14	9.0000
)))	chr6:31728837-31729090(+)$1	1	21	24	9.0000
(((	chr17:76120371-76120633(-)$1	1	29	32	9.0000
(((	chr16:2113987-2114315(+)$1	1	23	26	9.0000
((.	chr22:50027373-50027604(-)$1	1	70	73	9.0000
(..	chr14:74206823-74207111(-)$1	1	17	20	9.0000
.((	chr22:50018148-50018375(-)$1	1	30	33	9.0000
..(	chr16:1500532-1500793(-)$1	1	34	37	9.0000
(((	chr1:2200462-2200700(+)$1	1	21	24	9.0000
)))	chr22:38897139-38897399(-)$1	1	128	131	9.0000
(((	chr22:19967981-19968223(-)$1	1	3	6	9.0000
((.	chr6:4953981-4954245(+)$1	1	15	18	9.0000
)))	chr7:98479287-98479498(+)$1	1	39	42	9.0000
.((	chr12:6619610-6619814(+)$1	1	56	59	9.0000
(((	chr16:88567985-88568223(+)$1	1	0	3	9.0000
)))	chr2:97534693-97534932(-)$1	1	232	235	9.0000
(.(	chr16:89042616-89042874(-)$1	1	6	9	9.0000
.((	chr12:133076224-133076467(+)$1	1	8	11	9.0000
.))	chr19:1408515-1408750(+)$1	1	31	34	9.0000
((.	chr19:18548149-18548380(-)$1	1	9	12	9.0000
(.(	chr8:145109481-145109731(-)$1	1	17	20	9.0000
(((	chr1:14450627-14450832(-)$1	1	62	65	9.0000
.((	chr19:2337732-2337998(+)$1	1	11	14	9.0000
...	chr11:61583061-61583370(+)$1	1	4	7	9.0000
(((	chr11:64535630-64535884(-)$1	1	6	9	9.0000
)))	chr1:155889668-155889878(-)$1	1	61	64	9.0000
(((	chr1:47728634-47728937(-)$1	1	9	12	9.0000
...	chr3:33431768-33432016(-)$1	1	165	168	9.0000
)((	chr19:50000899-50001117(+)$1	1	31	34	9.0000
...	chr7:23508066-23508328(-)$1	1	83	86	9.0000
.((	chr18:47017932-47018136(-)$1	1	21	24	9.0000
)))	chr19:3697808-3698051(-)$1	1	25	28	9.0000
).)	chr9:137241831-137242078(+)$1	1	78	81	9.0000
..(	chr16:85676524-85676777(+)$1	1	15	18	9.0000
(((	chr5:137688355-137688615(+)$1	1	10	13	9.0000
(((	chr19:1433782-1434044(+)$1	1	30	33	9.0000
(((	chr17:7809396-7809668(+)$1	1	62	65	9.0000
((.	chr16:85654240-85654473(+)$1	1	24	27	9.0000
..)	chr17:37007660-37007934(-)$1	1	54	57	9.0000
(((	chr16:71792216-71792420(-)$1	1	13	16	9.0000

#PSSM
G : 0.92	g : 0.07	
U : 0.93	u : 0.06	
G : 0.93	g : 0.06	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_transcript_m2_run2.nuc.txt

#NT
GGGGGCGGGGGU	chr16:89023670-89023923(-)$1	253	191	203	20.1489
AGGGUCUGGGGG	chr21:47612180-47612462(-)$1	282	142	154	17.1702
GGGUGCUGGGAG	chr1:227142436-227142751(+)$1	315	168	180	16.9574
GAGGGCUGGGUG	chr22:20112639-20112878(+)$1	239	128	140	17.9148
GGUUGCUGGGGU	chr2:236424389-236424703(+)$1	314	201	213	15.8936
GGGGCCUGGGGG	chr8:124408133-124408489(-)$1	356	132	144	21.1063
GCGGGCUGGGGG	chr11:65190329-65190543(+)$1	214	55	67	20.7872
GGGGUCUCGGGU	chr3:128216753-128217007(+)$1	254	117	129	15.7872
GGGGGUUGGGGG	chr16:85627581-85627867(+)$1	286	251	263	21.3191
UGAGGCUGGGGU	chr11:65191089-65191327(+)$1	238	208	220	16.4255
gggggcugaggg	chr7:907469-907836(+)$1	367	231	243	20.4680
GGGGGUUGGUGA	chr22:49957820-49958194(-)$1	374	168	180	15.2553
GGGGGCUGAGAU	chr10:126781476-126781771(-)$1	295	110	122	16.0000
cggggcggggga	chr16:1429076-1429316(-)$1	240	25	37	15.7872
GUgggcuggggc	chr11:95522572-95522943(-)$1	371	97	109	20.1489
GGGGGUAGGGGU	chr1:1242455-1242727(-)$1	272	99	111	16.4255
UGGGGCUGGGGU	chr5:139032774-139033058(+)$1	284	25	37	20.2553
GGGGGGUGGGGG	chr17:56168045-56168272(+)$1	227	152	164	21.3191
GAGGGCUGGGUG	chr22:20112565-20112839(+)$1	274	202	214	17.9148
ggguguuggggu	chr22:20110878-20111157(+)$1	279	4	16	16.3191
uggggcugggau	chr10:72473898-72474195(+)$1	297	257	269	16.6382
GGCGGCUGGGCC	chr14:105914064-105914331(+)$1	267	57	69	16.3191
GGCCGCUGGGGG	chr4:1745476-1745824(+)$1	348	207	219	16.5319
CGGGGCUGGGCG	chr4:140097463-140097780(-)$1	317	154	166	17.2765
GAGGGCGGGGGC	chr13:114144504-114144848(-)$1	344	108	120	16.8510
CGGGGCUGGGGC	chr10:6205936-6206288(+)$1	352	221	233	20.2553
GGGGGCUGGGGC	chr7:5569722-5569996(-)$1	274	173	185	23.9787
GAGGGCUGGGGA	chr17:76143081-76143412(+)$1	331	294	306	19.8297
GAGGGCUGGAGC	chr5:881516-881773(-)$1	257	122	134	16.1063
GAGGGCUGAGGA	chr19:34878796-34879039(+)$1	243	204	216	15.5744
GGGGGCUGGGUU	chr9:131465741-131466093(+)$1	352	33	45	20.4680
UGAGGCUGGGGU	chr16:89002598-89002871(-)$1	273	33	45	16.4255
GGGCACUGGGGC	chr19:34879349-34879573(+)$1	224	96	108	15.8936
GGGGGCGCGGGG	chr1:46768317-46768579(-)$1	262	4	16	16.6382
GGGGGAUGGGUG	chr3:9438893-9439185(-)$1	292	122	134	17.8085
GGGGCAUGGGGC	chr16:89361738-89362046(-)$1	308	96	108	16.8510
ggggaguggggg	chr5:286028-286392(+)$1	364	127	139	17.4893
GUGGGCAGGGGC	chr16:85018589-85018906(-)$1	317	80	92	16.1063
AGGGCCUGGGGC	chr2:10328684-10328996(+)$1	312	133	145	16.5319
GGGGGCGGUGGG	chr14:74225061-74225420(-)$1	359	107	119	16.5319
GGUGGCUGGGGC	chr1:972404-972675(+)$1	271	126	138	20.1489
GGUGGGUGGGGG	chr13:95897873-95898213(-)$1	340	69	81	17.4893
ggggcaugggga	chr2:236547704-236548028(+)$1	324	82	94	16.1063
GGGGUCUGGGUG	chr9:140501182-140501493(+)$1	311	36	48	17.5957
GGAGGCUGGAGG	chr7:1492371-1492604(-)$1	233	46	58	16.4255
GGGGGCUCGGGC	chr10:43902721-43903017(-)$1	296	257	269	19.6170

#otherMatches

#Struct PSSM
dddd]dddd::e	chrX:53710703-53710987(-)$1	284	182	194	21.3191
hhhhFFFFFF::	chr16:89023670-89023923(-)$1	253	191	203	20.1489
:FFFFFF{DDDD	chr21:47612180-47612462(-)$1	282	142	154	17.1702
:::::ffffffc	chr1:227142436-227142751(+)$1	315	168	180	16.9574
eeeeecccffff	chr22:20112639-20112878(+)$1	239	128	140	17.9148
fiiiiiiiii]a	chr2:236424389-236424703(+)$1	314	201	213	15.8936
4ggggggg::::	chr8:124408133-124408489(-)$1	356	132	144	21.1063
FFFEEEEEMMMM	chr11:65190329-65190543(+)$1	214	55	67	20.7872
ffffffeeeeee	chr3:128216753-128217007(+)$1	254	117	129	15.7872
liiiiiiiiiJJ	chr16:85627581-85627867(+)$1	286	251	263	21.3191
offffffIIIII	chr11:65191089-65191327(+)$1	238	208	220	16.4255
HHHHDDDD}AEE	chr7:907469-907836(+)$1	367	231	243	20.4680
llleeeeecccd	chr22:49957820-49958194(-)$1	374	168	180	15.2553
$$ggggggg!!e	chr10:126781476-126781771(-)$1	295	110	122	16.0000
============	chr16:1429076-1429316(-)$1	240	25	37	15.7872
5555ccc]dddd	chr11:95522572-95522943(-)$1	371	97	109	20.1489
2ccceeeee$$$	chr1:1242455-1242727(-)$1	272	99	111	16.4255
III:ddddoooo	chr5:139032774-139033058(+)$1	284	25	37	20.2553
iiiiEEEEEYYB	chr17:56168045-56168272(+)$1	227	152	164	21.3191
=========nnn	chr22:20112565-20112839(+)$1	274	202	214	17.9148
ff%%%%%%dddd	chr22:20110878-20111157(+)$1	279	4	16	16.3191
}CCC:eeeee""	chr10:72473898-72474195(+)$1	297	257	269	16.6382
bb[bb[======	chr14:105914064-105914331(+)$1	267	57	69	16.3191
dddd:eeeeecc	chr4:1745476-1745824(+)$1	348	207	219	16.5319
JJJJJKKCCC{B	chr4:140097463-140097780(-)$1	317	154	166	17.2765
KKA{EEEEE{CC	chr13:114144504-114144848(-)$1	344	108	120	16.8510
ggggg]eeeee2	chr10:6205936-6206288(+)$1	352	221	233	20.2553
=======::ggg	chr7:5569722-5569996(-)$1	274	173	185	23.9787
eeeeebbdddd2	chr17:76143081-76143412(+)$1	331	294	306	19.8297
]bb22ccc5555	chr5:881516-881773(-)$1	257	122	134	16.1063
""ffffff[arr	chr19:34878796-34879039(+)$1	243	204	216	15.5744
IIIIII::::::	chr9:131465741-131466093(+)$1	352	33	45	20.4680
::::::::::CC	chr16:89002598-89002871(-)$1	273	33	45	16.4255
##a!!eeeee[a	chr19:34879349-34879573(+)$1	224	96	108	15.8936
:EEEEE{A{DDD	chr1:46768317-46768579(-)$1	262	4	16	16.6382
EE}BB}A}GGGG	chr3:9438893-9439185(-)$1	292	122	134	17.8085
obbbb]ccc]cc	chr16:89361738-89362046(-)$1	308	96	108	16.8510
qqqqqqqqccc:	chr5:286028-286392(+)$1	364	127	139	17.4893
[ccc[bb[dddd	chr16:85018589-85018906(-)$1	317	80	92	16.1063
iiiiiillliii	chr2:10328684-10328996(+)$1	312	133	145	16.5319
hh333bbiiiii	chr14:74225061-74225420(-)$1	359	107	119	16.5319
!!ddddmmmmdd	chr1:972404-972675(+)$1	271	126	138	20.1489
a]bb::::bb[c	chr13:95897873-95898213(-)$1	340	69	81	17.4893
fff[ccc$$$$$	chr2:236547704-236548028(+)$1	324	82	94	16.1063
eeeee]ddddff	chr9:140501182-140501493(+)$1	311	36	48	17.5957
GG:ffffffmmm	chr7:1492371-1492604(-)$1	233	46	58	16.4255
FFFFFF}DDDD}	chr10:43902721-43903017(-)$1	296	257	269	19.6170

#DB
)))).))))..(	chrX:53710703-53710987(-)$1	1	182	194	21.3191
))))))))))..	chr16:89023670-89023923(-)$1	1	191	203	20.1489
.((((((.((((	chr21:47612180-47612462(-)$1	1	142	154	17.1702
.....(((((((	chr1:227142436-227142751(+)$1	1	168	180	16.9574
))))))))((((	chr22:20112639-20112878(+)$1	1	128	140	17.9148
)))))))))).)	chr2:236424389-236424703(+)$1	1	201	213	15.8936
.)))))))....	chr8:124408133-124408489(-)$1	1	132	144	21.1063
((((((((....	chr11:65190329-65190543(+)$1	1	55	67	20.7872
))))))))))))	chr3:128216753-128217007(+)$1	1	117	129	15.7872
.)))))))))))	chr16:85627581-85627867(+)$1	1	251	263	21.3191
.)))))))))))	chr11:65191089-65191327(+)$1	1	208	220	16.4255
)))))))).)))	chr7:907469-907836(+)$1	1	231	243	20.4680
...))))))))(	chr22:49957820-49958194(-)$1	1	168	180	15.2553
..(((((((..(	chr10:126781476-126781771(-)$1	1	110	122	16.0000
((((((((((((	chr16:1429076-1429316(-)$1	1	25	37	15.7872
....))).))))	chr11:95522572-95522943(-)$1	1	97	109	20.1489
.)))(((((...	chr1:1242455-1242727(-)$1	1	99	111	16.4255
(((.((((....	chr5:139032774-139033058(+)$1	1	25	37	20.2553
)))))))))..)	chr17:56168045-56168272(+)$1	1	152	164	21.3191
(((((((((...	chr22:20112565-20112839(+)$1	1	202	214	17.9148
((......((((	chr22:20110878-20111157(+)$1	1	4	16	16.3191
.))).(((((..	chr10:72473898-72474195(+)$1	1	257	269	16.6382
((.((.((((((	chr14:105914064-105914331(+)$1	1	57	69	16.3191
)))).(((((((	chr4:1745476-1745824(+)$1	1	207	219	16.5319
(((((..(((.(	chr4:140097463-140097780(-)$1	1	154	166	17.2765
..(.(((((.((	chr13:114144504-114144848(-)$1	1	108	120	16.8510
))))).))))).	chr10:6205936-6206288(+)$1	1	221	233	20.2553
)))))))..(((	chr7:5569722-5569996(-)$1	1	173	185	23.9787
))))))))))).	chr17:76143081-76143412(+)$1	1	294	306	19.8297
.))..)))....	chr5:881516-881773(-)$1	1	122	134	16.1063
..((((((.(..	chr19:34878796-34879039(+)$1	1	204	216	15.5744
((((((......	chr9:131465741-131466093(+)$1	1	33	45	20.4680
..........((	chr16:89002598-89002871(-)$1	1	33	45	16.4255
..(..(((((.(	chr19:34879349-34879573(+)$1	1	96	108	15.8936
.(((((.(.(((	chr1:46768317-46768579(-)$1	1	4	16	16.6382
)).)).).))))	chr3:9438893-9439185(-)$1	1	122	134	17.8085
.)))).))).))	chr16:89361738-89362046(-)$1	1	96	108	16.8510
........))).	chr5:286028-286392(+)$1	1	127	139	17.4893
.(((.((.((((	chr16:85018589-85018906(-)$1	1	80	92	16.1063
((((((...)))	chr2:10328684-10328996(+)$1	1	133	145	16.5319
))...)))))))	chr14:74225061-74225420(-)$1	1	107	119	16.5319
..((((....))	chr1:972404-972675(+)$1	1	126	138	20.1489
).))....((.(	chr13:95897873-95898213(-)$1	1	69	81	17.4893
(((.(((.....	chr2:236547704-236548028(+)$1	1	82	94	16.1063
))))).))))))	chr9:140501182-140501493(+)$1	1	36	48	17.5957
((.((((((...	chr7:1492371-1492604(-)$1	1	46	58	16.4255
)))))).)))).	chr10:43902721-43903017(-)$1	1	257	269	19.6170

#PSSM
G : 0.72	g : 0.08	U : 0.06	A : 0.04	C : 0.04	c : 0.02	u : 0.02	
G : 0.68	A : 0.12	g : 0.12	U : 0.04	C : 0.02	
G : 0.68	g : 0.14	U : 0.06	A : 0.06	C : 0.04	
G : 0.76	g : 0.12	U : 0.04	C : 0.04	u : 0.02	
G : 0.70	g : 0.10	U : 0.06	C : 0.06	A : 0.02	a : 0.02	c : 0.02	
C : 0.68	c : 0.08	G : 0.06	U : 0.06	A : 0.04	u : 0.02	g : 0.02	a : 0.02	
U : 0.72	u : 0.12	G : 0.08	A : 0.04	g : 0.02	
G : 0.78	g : 0.14	C : 0.06	
G : 0.78	g : 0.12	A : 0.04	a : 0.02	U : 0.02	
G : 0.78	g : 0.14	A : 0.04	U : 0.02	
G : 0.65	g : 0.12	U : 0.10	A : 0.04	C : 0.04	a : 0.02	
G : 0.36	C : 0.23	U : 0.19	A : 0.06	g : 0.04	a : 0.04	u : 0.04	c : 0.02	

#score	842.2127659574476
#seq	47
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_CDS_m3_run2.nuc.txt

#NT
GGCCCUAAGUUCAAGAUGCCUGAUAUGCAUUUCAAAGCCCCCAAUAUUUCUAUGCCUGAUGUUGAUCUAAAU	chr11:62294486-62294761(-)$1	275	184	256	174.0000
GGCCCCAAGCUUAAGAUGCCUGAGAUGCACUUCAAGGCCCCCAAGAUCUCCAUGCCUGAUGUGGACUUACAC	chr11:62295475-62295705(-)$1	230	120	192	162.0000
GGCCCUAAGUUCAAGAUGCCUGAUAUGCAUUUCAAAGCCCCCAAUAUUUCUAUGCCUGAUGUUGAUCUAAAU	chr11:62294333-62294601(-)$1	268	24	96	174.0000
GGGCCCAAGUUCAAGAUGCCAGAGAUGAAUAUCAAAGCCCCCAAGAUCCCCAUGCCUGACUUUGAUUUGCAU	chr11:62292795-62293047(-)$1	252	0	72	163.0000

#otherMatches

#Struct PSSM
eeee:dddd[ccc[accc"""eeeee^^^^^^^^^^^^^^^^^^^eeeeeccc]a]ccc]dddd:cccqqqq	chr11:62290721-62290952(-)$1	231	29	101	171.0000
ssssssssseeeee22ddddcccqqqqqqqqccc:::::::gggggggrrrrrrrrrggggggg::::::::	chr11:62294486-62294761(-)$1	275	184	256	174.0000
eeee:bb[bbpppppppbb]bbA}BB}FFFFFFYYEEEEEccc!!ffffff!!dddd"""cccooooooccc	chr11:62295475-62295705(-)$1	230	120	192	162.0000
seeeee:A{FFFFFF{EEEEEccc!!eeeee[bb"""eeeee"""dddd$$$$$ccc!!bb!!cccmmmmcc	chr11:62294333-62294601(-)$1	268	24	96	174.0000
DDDDNNNNNDDDDBB{FFFFFFeeeee"""ggggggga"""bb[annnnna]bb333a]ggggggg333eee	chr11:62292795-62293047(-)$1	252	0	72	163.0000

#DB
)))).((((.(((.((((...(((((...................)))))))).).))).)))).(((....	chr11:62290721-62290952(-)$1	1	29	101	171.0000
.........)))))..))))(((........))).......(((((((.........)))))))........	chr11:62294486-62294761(-)$1	1	184	256	174.0000
)))).((.((.......)).))).)).))))))..)))))(((..((((((..((((...(((......)))	chr11:62295475-62295705(-)$1	1	120	192	162.0000
.))))).(.((((((.((((((((..(((((.((...(((((...((((.....(((..((..(((....))	chr11:62294333-62294601(-)$1	1	24	96	174.0000
((((.....((((((.(((((((((((...((((((((...((.(.....).))...).)))))))...)))	chr11:62292795-62293047(-)$1	1	0	72	163.0000

#PSSM
G : 1.00	
G : 1.00	
C : 0.80	G : 0.20	
C : 1.00	
C : 1.00	
C : 0.60	U : 0.40	
A : 1.00	
A : 1.00	
G : 1.00	
U : 0.80	C : 0.20	
U : 1.00	
C : 0.80	U : 0.20	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 0.80	A : 0.20	
G : 1.00	
A : 1.00	
G : 0.60	U : 0.40	
A : 1.00	
U : 1.00	
G : 1.00	
C : 0.60	A : 0.40	
A : 1.00	
U : 0.60	C : 0.40	
U : 0.60	A : 0.40	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 0.80	G : 0.20	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 0.60	U : 0.40	
A : 1.00	
U : 1.00	
C : 0.60	U : 0.40	
U : 0.80	C : 0.20	
C : 1.00	
C : 0.60	U : 0.40	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 0.60	C : 0.40	
G : 0.60	U : 0.40	
U : 1.00	
U : 0.80	G : 0.20	
G : 1.00	
A : 1.00	
U : 0.60	C : 0.40	
C : 0.60	U : 0.40	
U : 1.00	
A : 0.60	G : 0.40	
A : 0.60	C : 0.40	
A : 1.00	
U : 0.60	C : 0.40	

#score	844.0
#seq	5
#width	72
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_CDS_m3_run2.nuc.txt

#NT
GCUGG	chr2:44051040-44051277(-)$1	237	50	55	14.9999
GCUGG	chr1:155290210-155290483(+)$1	273	48	53	14.9999
GCUGG	chr1:153617564-153617821(+)$1	257	78	83	14.9999
GCUGG	chr3:52842539-52842787(+)$1	248	81	86	14.9999
GCUGG	chr3:49721307-49721580(-)$1	273	49	54	14.9999
GCUGG	chr12:56119526-56119783(-)$1	257	125	130	14.9999
GCUGG	chr3:184101210-184101456(+)$1	246	193	198	14.9999
GCUGG	chrX:48681489-48681763(+)$1	274	118	123	14.9999
GCUGG	chr17:78093022-78093320(+)$1	298	5	10	14.9999
GCUGG	chr22:36661961-36662196(+)$1	235	51	56	14.9999
GCUGG	chr17:1680558-1680798(+)$1	240	2	7	14.9999
GCUGG	chr5:74016886-74017188(+)$1	302	84	89	14.9999
GCUGG	chr3:132279844-132280087(-)$1	243	125	130	14.9999
GCUGG	chr12:30862661-30862939(-)$1	278	57	62	14.9999
GCUGG	chr19:15225955-15226204(-)$1	249	194	199	14.9999
GCUGG	chr17:46058428-46058681(+)$1	253	154	159	14.9999
GCUGG	chr14:24909146-24909402(-)$1	256	14	19	14.9999
GCUGG	chr16:67917856-67918117(+)$1	261	254	259	14.9999
GCUGG	chr2:95753113-95753350(-)$1	237	38	43	14.9999
GCUGG	chr2:220074112-220074390(+)$1	278	133	138	14.9999
GCUGG	chr9:14737405-14737692(-)$1	287	33	38	14.9999
GCUGG	chr10:93768697-93768921(+)$1	224	66	71	14.9999
GCUGG	chr17:46057981-46058265(+)$1	284	51	56	14.9999
GCUGG	chr1:43220552-43220823(-)$1	271	120	125	14.9999
GCUGG	chr3:49721453-49721706(-)$1	253	124	129	14.9999
GCUGG	chr17:1680614-1680849(+)$1	235	23	28	14.9999
GCUGG	chr3:52841703-52841966(+)$1	263	224	229	14.9999
GCUGG	chr1:19403242-19403498(-)$1	256	130	135	14.9999
GCUGG	chr3:184107068-184107369(+)$1	301	114	119	14.9999
GCUGG	chr17:74383271-74383530(+)$1	259	84	89	14.9999
GCUGG	chr17:80400252-80400523(+)$1	271	35	40	14.9999
GCUGG	chr2:220074016-220074294(+)$1	278	229	234	14.9999
GCUGG	chr2:219563719-219564026(+)$1	307	94	99	14.9999
GCUGG	chr21:35275751-35276042(-)$1	291	182	187	14.9999
GCUGG	chr16:31202619-31202847(+)$1	228	3	8	14.9999
GCUGG	chr17:38061040-38061317(-)$1	277	132	137	14.9999
GCUGG	chr3:52842467-52842669(+)$1	202	153	158	14.9999
GCUGG	chr1:19421936-19422178(-)$1	242	121	126	14.9999
GCUGG	chrX:70787478-70787701(+)$1	223	29	34	14.9999
GCUGG	chr9:117063626-117063842(+)$1	216	124	129	14.9999
GCUGG	chr19:14589058-14589357(-)$1	299	24	29	14.9999
GCUGG	chr17:80016415-80016696(-)$1	281	138	143	14.9999
GCUGG	chr9:117062251-117062477(+)$1	226	1	6	14.9999
GCUGG	chr21:35275684-35275951(-)$1	267	91	96	14.9999
GCUGG	chr17:1680598-1680814(+)$1	216	39	44	14.9999
GCUGG	chrX:18912252-18912495(-)$1	243	53	58	14.9999
GCUGG	chr7:930549-930790(+)$1	241	82	87	14.9999
GCUGG	chr20:61468393-61468662(+)$1	269	112	117	14.9999
GCUGG	chr3:52842587-52842843(+)$1	256	33	38	14.9999
GCUGG	chr20:61468389-61468593(+)$1	204	116	121	14.9999
GCUGG	chr3:184104301-184104559(+)$1	258	49	54	14.9999
GCUGG	chr9:117071529-117071789(+)$1	260	184	189	14.9999
GCUGG	chr3:52842505-52842739(+)$1	234	115	120	14.9999
GCUGG	chr11:65404296-65404539(+)$1	243	134	139	14.9999
GCUGG	chr3:49721395-49721652(-)$1	257	70	75	14.9999
GCUGG	chr17:74383426-74383693(+)$1	267	197	202	14.9999
GCUGG	chr2:42990383-42990595(-)$1	212	27	32	14.9999
GCUGG	chr4:187209664-187209886(+)$1	222	6	11	14.9999
GCUGG	chr20:44978891-44979167(-)$1	276	32	37	14.9999
GCUGG	chr16:723779-724039(+)$1	260	140	145	14.9999
GCUGG	chr20:61468470-61468716(+)$1	246	35	40	14.9999
GCUGG	chr14:103576588-103576837(+)$1	249	0	5	14.9999

#otherMatches

#Struct PSSM
[dddd	chr20:2815954-2816213(-)$1	259	118	123	14.9999
hhh[a	chr2:44051040-44051277(-)$1	237	50	55	14.9999
eeeee	chr1:155290210-155290483(+)$1	273	48	53	14.9999
]bbbb	chr1:153617564-153617821(+)$1	257	78	83	14.9999
b[ccc	chr3:52842539-52842787(+)$1	248	81	86	14.9999
MFFFF	chr3:49721307-49721580(-)$1	273	49	54	14.9999
g]ddd	chr12:56119526-56119783(-)$1	257	125	130	14.9999
ggggg	chr3:184101210-184101456(+)$1	246	193	198	14.9999
QDDDD	chrX:48681489-48681763(+)$1	274	118	123	14.9999
HHH{A	chr17:78093022-78093320(+)$1	298	5	10	14.9999
eeee:	chr22:36661961-36662196(+)$1	235	51	56	14.9999
CCCCA	chr17:1680558-1680798(+)$1	240	2	7	14.9999
CCCOO	chr5:74016886-74017188(+)$1	302	84	89	14.9999
hh]cc	chr3:132279844-132280087(-)$1	243	125	130	14.9999
ddggg	chr12:30862661-30862939(-)$1	278	57	62	14.9999
f22cc	chr19:15225955-15226204(-)$1	249	194	199	14.9999
IIIIe	chr17:46058428-46058681(+)$1	253	154	159	14.9999
d!!cc	chr14:24909146-24909402(-)$1	256	14	19	14.9999
IIIII	chr16:67917856-67918117(+)$1	261	254	259	14.9999
NFFFF	chr2:95753113-95753350(-)$1	237	38	43	14.9999
hhhhh	chr2:220074112-220074390(+)$1	278	133	138	14.9999
dddbb	chr9:14737405-14737692(-)$1	287	33	38	14.9999
%dddd	chr10:93768697-93768921(+)$1	224	66	71	14.9999
hhhhh	chr17:46057981-46058265(+)$1	284	51	56	14.9999
fmmmm	chr1:43220552-43220823(-)$1	271	120	125	14.9999
ddd[c	chr3:49721453-49721706(-)$1	253	124	129	14.9999
eeeee	chr17:1680614-1680849(+)$1	235	23	28	14.9999
E}DDD	chr3:52841703-52841966(+)$1	263	224	229	14.9999
bbppp	chr1:19403242-19403498(-)$1	256	130	135	14.9999
hhhhh	chr3:184107068-184107369(+)$1	301	114	119	14.9999
gg]ff	chr17:74383271-74383530(+)$1	259	84	89	14.9999
[a[dd	chr17:80400252-80400523(+)$1	271	35	40	14.9999
hhhhh	chr2:220074016-220074294(+)$1	278	229	234	14.9999
ea[ee	chr2:219563719-219564026(+)$1	307	94	99	14.9999
ddddf	chr21:35275751-35276042(-)$1	291	182	187	14.9999
::::G	chr16:31202619-31202847(+)$1	228	3	8	14.9999
ccFFF	chr17:38061040-38061317(-)$1	277	132	137	14.9999
eeedd	chr3:52842467-52842669(+)$1	202	153	158	14.9999
ggg##	chr1:19421936-19422178(-)$1	242	121	126	14.9999
D:ccc	chrX:70787478-70787701(+)$1	223	29	34	14.9999
fffff	chr9:117063626-117063842(+)$1	216	124	129	14.9999
:::cc	chr19:14589058-14589357(-)$1	299	24	29	14.9999
}AGGG	chr17:80016415-80016696(-)$1	281	138	143	14.9999
:FFFF	chr9:117062251-117062477(+)$1	226	1	6	14.9999
lccc:	chr21:35275684-35275951(-)$1	267	91	96	14.9999
eeeee	chr17:1680598-1680814(+)$1	216	39	44	14.9999
cccee	chrX:18912252-18912495(-)$1	243	53	58	14.9999
ccc:e	chr7:930549-930790(+)$1	241	82	87	14.9999
a!!ee	chr20:61468393-61468662(+)$1	269	112	117	14.9999
fffff	chr3:52842587-52842843(+)$1	256	33	38	14.9999
a!!ee	chr20:61468389-61468593(+)$1	204	116	121	14.9999
=====	chr3:184104301-184104559(+)$1	258	49	54	14.9999
^^^^^	chr9:117071529-117071789(+)$1	260	184	189	14.9999
fffff	chr3:52842505-52842739(+)$1	234	115	120	14.9999
fffff	chr11:65404296-65404539(+)$1	243	134	139	14.9999
a]eee	chr3:49721395-49721652(-)$1	257	70	75	14.9999
bb]bb	chr17:74383426-74383693(+)$1	267	197	202	14.9999
ccc[b	chr2:42990383-42990595(-)$1	212	27	32	14.9999
FFF::	chr4:187209664-187209886(+)$1	222	6	11	14.9999
hhhhh	chr20:44978891-44979167(-)$1	276	32	37	14.9999
!ammm	chr16:723779-724039(+)$1	260	140	145	14.9999
a!!ee	chr20:61468470-61468716(+)$1	246	35	40	14.9999
EEEEE	chr14:103576588-103576837(+)$1	249	0	5	14.9999

#DB
.((((	chr20:2815954-2816213(-)$1	1	118	123	14.9999
(((.(	chr2:44051040-44051277(-)$1	1	50	55	14.9999
(((((	chr1:155290210-155290483(+)$1	1	48	53	14.9999
.))((	chr1:153617564-153617821(+)$1	1	78	83	14.9999
(.(((	chr3:52842539-52842787(+)$1	1	81	86	14.9999
.((((	chr3:49721307-49721580(-)$1	1	49	54	14.9999
).)))	chr12:56119526-56119783(-)$1	1	125	130	14.9999
(((((	chr3:184101210-184101456(+)$1	1	193	198	14.9999
.((((	chrX:48681489-48681763(+)$1	1	118	123	14.9999
(((.(	chr17:78093022-78093320(+)$1	1	5	10	14.9999
)))).	chr22:36661961-36662196(+)$1	1	51	56	14.9999
(((((	chr17:1680558-1680798(+)$1	1	2	7	14.9999
(((..	chr5:74016886-74017188(+)$1	1	84	89	14.9999
)).))	chr3:132279844-132280087(-)$1	1	125	130	14.9999
(((((	chr12:30862661-30862939(-)$1	1	57	62	14.9999
)..))	chr19:15225955-15226204(-)$1	1	194	199	14.9999
))))(	chr17:46058428-46058681(+)$1	1	154	159	14.9999
(..((	chr14:24909146-24909402(-)$1	1	14	19	14.9999
)))))	chr16:67917856-67918117(+)$1	1	254	259	14.9999
.((((	chr2:95753113-95753350(-)$1	1	38	43	14.9999
)))))	chr2:220074112-220074390(+)$1	1	133	138	14.9999
)))))	chr9:14737405-14737692(-)$1	1	33	38	14.9999
.((((	chr10:93768697-93768921(+)$1	1	66	71	14.9999
)))))	chr17:46057981-46058265(+)$1	1	51	56	14.9999
(....	chr1:43220552-43220823(-)$1	1	120	125	14.9999
(((.(	chr3:49721453-49721706(-)$1	1	124	129	14.9999
(((((	chr17:1680614-1680849(+)$1	1	23	28	14.9999
).)))	chr3:52841703-52841966(+)$1	1	224	229	14.9999
((...	chr1:19403242-19403498(-)$1	1	130	135	14.9999
)))))	chr3:184107068-184107369(+)$1	1	114	119	14.9999
)).))	chr17:74383271-74383530(+)$1	1	84	89	14.9999
.(.((	chr17:80400252-80400523(+)$1	1	35	40	14.9999
)))))	chr2:220074016-220074294(+)$1	1	229	234	14.9999
((.((	chr2:219563719-219564026(+)$1	1	94	99	14.9999
(((((	chr21:35275751-35276042(-)$1	1	182	187	14.9999
....(	chr16:31202619-31202847(+)$1	1	3	8	14.9999
)))))	chr17:38061040-38061317(-)$1	1	132	137	14.9999
)))))	chr3:52842467-52842669(+)$1	1	153	158	14.9999
(((..	chr1:19421936-19422178(-)$1	1	121	126	14.9999
(.(((	chrX:70787478-70787701(+)$1	1	29	34	14.9999
(((((	chr9:117063626-117063842(+)$1	1	124	129	14.9999
...((	chr19:14589058-14589357(-)$1	1	24	29	14.9999
.))))	chr17:80016415-80016696(-)$1	1	138	143	14.9999
.((((	chr9:117062251-117062477(+)$1	1	1	6	14.9999
.))).	chr21:35275684-35275951(-)$1	1	91	96	14.9999
(((((	chr17:1680598-1680814(+)$1	1	39	44	14.9999
)))((	chrX:18912252-18912495(-)$1	1	53	58	14.9999
))).(	chr7:930549-930790(+)$1	1	82	87	14.9999
(..((	chr20:61468393-61468662(+)$1	1	112	117	14.9999
)))))	chr3:52842587-52842843(+)$1	1	33	38	14.9999
(..((	chr20:61468389-61468593(+)$1	1	116	121	14.9999
(((((	chr3:184104301-184104559(+)$1	1	49	54	14.9999
.....	chr9:117071529-117071789(+)$1	1	184	189	14.9999
(((((	chr3:52842505-52842739(+)$1	1	115	120	14.9999
(((((	chr11:65404296-65404539(+)$1	1	134	139	14.9999
).)))	chr3:49721395-49721652(-)$1	1	70	75	14.9999
)).))	chr17:74383426-74383693(+)$1	1	197	202	14.9999
(((.(	chr2:42990383-42990595(-)$1	1	27	32	14.9999
(((..	chr4:187209664-187209886(+)$1	1	6	11	14.9999
(((((	chr20:44978891-44979167(-)$1	1	32	37	14.9999
.(...	chr16:723779-724039(+)$1	1	140	145	14.9999
(..((	chr20:61468470-61468716(+)$1	1	35	40	14.9999
(((((	chr14:103576588-103576837(+)$1	1	0	5	14.9999

#PSSM
G : 0.99	
C : 0.99	
U : 0.99	
G : 0.99	
G : 0.99	

#score	944.9999999999995
#seq	63
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_CDS_m3_run1.nuc.txt

#NT
GGGAG	chr14:94849370-94849659(-)$1	289	26	31	14.9999
GGGAG	chr11:5275503-5275744(-)$1	241	123	128	14.9999
GGGAG	chr7:45144099-45144429(-)$1	330	324	329	14.9999
GGGAG	chr17:73774724-73774970(-)$1	246	15	20	14.9999
GGGAG	chr14:23770951-23771156(+)$1	205	134	139	14.9999
GGGAG	chr2:21266704-21267036(-)$1	332	7	12	14.9999
GGGAG	chr2:21266636-21266901(-)$1	265	196	201	14.9999
gggag	chr3:15900714-15900989(-)$1	275	0	5	14.9999
GGGAG	chr19:2270511-2270780(+)$1	269	188	193	14.9999
GGGAG	chr1:249151853-249152142(-)$1	289	194	199	14.9999
GGGAG	chr2:216300345-216300618(-)$1	273	164	169	14.9999
GGGAG	chr6:31508840-31509044(-)$1	204	39	44	14.9999
GGGAG	chr14:23770956-23771176(+)$1	220	129	134	14.9999
GGGAG	chr8:145693805-145694074(+)$1	269	38	43	14.9999
GGGAG	chr11:116707700-116707974(-)$1	274	100	105	14.9999
gggag	chr3:13461567-13461855(-)$1	288	60	65	14.9999
GGGAG	chr6:31508813-31509030(-)$1	217	25	30	14.9999
GGGAG	chr22:39714970-39715194(-)$1	224	2	7	14.9999
GGGAG	chr11:116707960-116708207(-)$1	247	21	26	14.9999
GGGAG	chr19:1104624-1104875(+)$1	251	78	83	14.9999
GGGAG	chr6:31937067-31937359(+)$1	292	77	82	14.9999
GGGAG	chr6:31508844-31509054(-)$1	210	49	54	14.9999
GGGAG	chr5:180670207-180670479(-)$1	272	189	194	14.9999
GGGAG	chr4:78740075-78740321(-)$1	246	222	227	14.9999
GGGAG	chr3:133467155-133467387(+)$1	232	62	67	14.9999

#otherMatches

#Struct PSSM
:DDDD	chr3:133465151-133465428(+)$1	277	12	17	14.9999
CCfff	chr14:94849370-94849659(-)$1	289	26	31	14.9999
hhhh#	chr11:5275503-5275744(-)$1	241	123	128	14.9999
CC:::	chr7:45144099-45144429(-)$1	330	324	329	14.9999
##fff	chr17:73774724-73774970(-)$1	246	15	20	14.9999
C}DDD	chr14:23770951-23771156(+)$1	205	134	139	14.9999
iiibb	chr2:21266704-21267036(-)$1	332	7	12	14.9999
f:::D	chr2:21266636-21266901(-)$1	265	196	201	14.9999
:AKKB	chr3:15900714-15900989(-)$1	275	0	5	14.9999
obb]e	chr19:2270511-2270780(+)$1	269	188	193	14.9999
ccmmm	chr1:249151853-249152142(-)$1	289	194	199	14.9999
ccc:e	chr2:216300345-216300618(-)$1	273	164	169	14.9999
=====	chr6:31508840-31509044(-)$1	204	39	44	14.9999
C}DDD	chr14:23770956-23771176(+)$1	220	129	134	14.9999
]bb33	chr8:145693805-145694074(+)$1	269	38	43	14.9999
ddddH	chr11:116707700-116707974(-)$1	274	100	105	14.9999
ggg]b	chr3:13461567-13461855(-)$1	288	60	65	14.9999
JJJJJ	chr6:31508813-31509030(-)$1	217	25	30	14.9999
cccc[	chr22:39714970-39715194(-)$1	224	2	7	14.9999
hh!!b	chr11:116707960-116708207(-)$1	247	21	26	14.9999
fff]c	chr19:1104624-1104875(+)$1	251	78	83	14.9999
JJJJJ	chr6:31937067-31937359(+)$1	292	77	82	14.9999
bqqqq	chr6:31508844-31509054(-)$1	210	49	54	14.9999
ggggg	chr5:180670207-180670479(-)$1	272	189	194	14.9999
ooooo	chr4:78740075-78740321(-)$1	246	222	227	14.9999
BBKKE	chr3:133467155-133467387(+)$1	232	62	67	14.9999

#DB
.((((	chr3:133465151-133465428(+)$1	1	12	17	14.9999
(((((	chr14:94849370-94849659(-)$1	1	26	31	14.9999
((((.	chr11:5275503-5275744(-)$1	1	123	128	14.9999
))...	chr7:45144099-45144429(-)$1	1	324	329	14.9999
..(((	chr17:73774724-73774970(-)$1	1	15	20	14.9999
).)))	chr14:23770951-23771156(+)$1	1	134	139	14.9999
(((((	chr2:21266704-21267036(-)$1	1	7	12	14.9999
)...)	chr2:21266636-21266901(-)$1	1	196	201	14.9999
.(..(	chr3:15900714-15900989(-)$1	1	0	5	14.9999
.)).)	chr19:2270511-2270780(+)$1	1	188	193	14.9999
((...	chr1:249151853-249152142(-)$1	1	194	199	14.9999
))).(	chr2:216300345-216300618(-)$1	1	164	169	14.9999
(((((	chr6:31508840-31509044(-)$1	1	39	44	14.9999
).)))	chr14:23770956-23771176(+)$1	1	129	134	14.9999
.))..	chr8:145693805-145694074(+)$1	1	38	43	14.9999
)))))	chr11:116707700-116707974(-)$1	1	100	105	14.9999
))).)	chr3:13461567-13461855(-)$1	1	60	65	14.9999
(((((	chr6:31508813-31509030(-)$1	1	25	30	14.9999
((((.	chr22:39714970-39715194(-)$1	1	2	7	14.9999
((..(	chr11:116707960-116708207(-)$1	1	21	26	14.9999
))).)	chr19:1104624-1104875(+)$1	1	78	83	14.9999
(((((	chr6:31937067-31937359(+)$1	1	77	82	14.9999
(....	chr6:31508844-31509054(-)$1	1	49	54	14.9999
(((((	chr5:180670207-180670479(-)$1	1	189	194	14.9999
.....	chr4:78740075-78740321(-)$1	1	222	227	14.9999
((..(	chr3:133467155-133467387(+)$1	1	62	67	14.9999

#PSSM
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	

#score	389.99999999999994
#seq	26
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_CDS_m1_run2.nuc.txt

#NT
gaggagg	chr10:105200133-105200388(+)$1	255	106	113	17.3934
GAGGAGC	chr9:35714957-35715175(-)$1	218	15	22	13.2131
GAGGAGG	chr6:42980595-42980856(-)$1	261	12	19	17.3934
GCGGAGG	chr1:160281654-160281885(-)$1	231	222	229	13.1311
GAGGAGG	chr19:8520196-8520463(+)$1	267	145	152	17.3934
GAGCAGG	chr17:75494504-75494723(+)$1	219	25	32	12.9672
GAGGAGG	chr17:27002013-27002247(+)$1	234	22	29	17.3934
GAUGAGG	chr4:122605790-122606027(-)$1	237	106	113	12.8852
GAAGAGG	chr4:2886140-2886494(+)$1	354	329	336	12.8852
GAGGAUG	chr11:62489245-62489503(-)$1	258	11	18	13.3770
GAGGACG	chr5:228229-228549(+)$1	320	166	173	13.2950
AAGGAGG	chr1:156104204-156104419(+)$1	215	76	83	13.2950
GAGGAAG	chr2:217026619-217026871(+)$1	252	145	152	13.4590
GAGGAAG	chr4:10080455-10080709(-)$1	254	104	111	13.4590
AAGGAGG	chr1:120279745-120279990(+)$1	245	63	70	13.2950
GGGGAGG	chrX:47062904-47063132(+)$1	228	98	105	13.1311
GAGGAGG	chr11:62484465-62484756(-)$1	291	193	200	17.3934
GAGGAUG	chr22:39104759-39105062(+)$1	303	149	156	13.3770
GAGGAGG	chr14:23945218-23945462(+)$1	244	34	41	17.3934
GUGGAGG	chr16:28855210-28855462(-)$1	252	180	187	13.2131
GAGGAGG	chr16:88643952-88644232(+)$1	280	71	78	17.3934
GAGGAGG	chr12:6879222-6879433(+)$1	211	156	163	17.3934
GAGGAGG	chr2:219294499-219294723(+)$1	224	199	206	17.3934
GUGGAGG	chr9:35059563-35059879(-)$1	316	142	149	13.2131
GAGGUGG	chr14:69347564-69347806(-)$1	242	62	69	13.2950
GGGGAGG	chr7:73609000-73609283(+)$1	283	97	104	13.1311
GAGGAAG	chr3:38167991-38168250(-)$1	259	7	14	13.4590
UAGGAGG	chr16:30080580-30080801(+)$1	221	8	15	13.1311
GAGGUGG	chr2:219130686-219130942(-)$1	256	162	169	13.2950
CAGGAGG	chr14:102496399-102496636(+)$1	237	138	145	13.3770
GAGGAGC	chr11:61605180-61605461(+)$1	281	150	157	13.2131
GAAGAGG	chr11:32610995-32611261(+)$1	266	186	193	12.8852
GAGGAGG	chr3:184042956-184043173(+)$1	217	28	35	17.3934
GCGGAGG	chr16:30087540-30087875(+)$1	335	111	118	13.1311
CAGGAGG	chr20:47570040-47570316(+)$1	276	55	62	13.3770
GAGGAGG	chr19:8547975-8548194(+)$1	219	114	121	17.3934
GAGGAGC	chr2:85846256-85846508(+)$1	252	117	124	13.2131
GAGAAGG	chr2:96948935-96949168(-)$1	233	94	101	12.8032
GAGGAAG	chr19:39198678-39198910(+)$1	232	150	157	13.4590
GAGGUGG	chrX:77380799-77381022(+)$1	223	177	184	13.2950
GAGGAGG	chr2:220427022-220427271(-)$1	249	0	7	17.3934
GAGGAGG	chr12:57000316-57000603(-)$1	287	97	104	17.3934
GAUGAGG	chr12:50151943-50152158(+)$1	215	6	13	12.8852
GAGGUGG	chr19:8553509-8553780(+)$1	271	142	149	13.2950
GAGGAGC	chr17:57754246-57754496(+)$1	250	117	124	13.2131
GAGCAGG	chr19:40325207-40325418(-)$1	211	113	120	12.9672
GAGGUGG	chr1:8927963-8928187(-)$1	224	152	159	13.2950
GAGGAGG	chr5:150496601-150496841(-)$1	240	109	116	17.3934
GAGGAUG	chr17:4442990-4443254(-)$1	264	116	123	13.3770
GAGGACG	chr2:219130048-219130285(-)$1	237	38	45	13.2950
GAGGAGG	chr7:5353147-5353382(-)$1	235	226	233	17.3934
GUGGAGG	chr9:35060408-35060621(-)$1	213	60	67	13.2131
GAGCAGG	chr1:19201814-19202093(-)$1	279	19	26	12.9672
GAGGAGA	chr5:179260054-179260316(+)$1	262	57	64	12.9672
CAGGAGG	chr11:67166486-67166735(-)$1	249	6	13	13.3770
GAGGCGG	chr14:102431167-102431370(+)$1	203	17	24	12.9672
GAGGAGG	chr16:3712809-3713068(-)$1	259	5	12	17.3934
AAGGAGG	chr9:136599016-136599277(-)$1	261	120	127	13.2950
GAGGAGU	chr20:2444292-2444548(-)$1	256	158	165	12.9672
GAGGAGG	chr12:49521694-49521983(-)$1	289	183	190	17.3934

#otherMatches

#Struct PSSM
cccdddd	chrX:47061936-47062206(+)$1	270	97	104	13.3770
JJJJJJJ	chr10:105200133-105200388(+)$1	255	106	113	17.3934
:::::ee	chr9:35714957-35715175(-)$1	218	15	22	13.2131
HHHMMMM	chr6:42980595-42980856(-)$1	261	12	19	17.3934
hhGGGGG	chr1:160281654-160281885(-)$1	231	222	229	13.1311
::cccdd	chr19:8520196-8520463(+)$1	267	145	152	17.3934
!ccc[cc	chr17:75494504-75494723(+)$1	219	25	32	12.9672
:::::::	chr17:27002013-27002247(+)$1	234	22	29	17.3934
eea[ddd	chr4:122605790-122606027(-)$1	237	106	113	12.8852
d]eeeee	chr4:2886140-2886494(+)$1	354	329	336	12.8852
g[bbeee	chr11:62489245-62489503(-)$1	258	11	18	13.3770
GGGGG}C	chr5:228229-228549(+)$1	320	166	173	13.2950
qqqqqbb	chr1:156104204-156104419(+)$1	215	76	83	13.2950
"""ccc"	chr2:217026619-217026871(+)$1	252	145	152	13.4590
qqqqqqb	chr4:10080455-10080709(-)$1	254	104	111	13.4590
[ccc[bb	chr1:120279745-120279990(+)$1	245	63	70	13.2950
eeee!!b	chrX:47062904-47063132(+)$1	228	98	105	13.1311
eeee[dd	chr11:62484465-62484756(-)$1	291	193	200	17.3934
d:::::D	chr22:39104759-39105062(+)$1	303	149	156	13.3770
KKHHHHH	chr14:23945218-23945462(+)$1	244	34	41	17.3934
eeeeEEE	chr16:28855210-28855462(-)$1	252	180	187	13.2131
[bb!!ee	chr16:88643952-88644232(+)$1	280	71	78	17.3934
nnbb]ee	chr12:6879222-6879433(+)$1	211	156	163	17.3934
CCEEEEE	chr2:219294499-219294723(+)$1	224	199	206	17.3934
A{CCCDD	chr9:35059563-35059879(-)$1	316	142	149	13.2131
DDD{FFF	chr14:69347564-69347806(-)$1	242	62	69	13.2950
GGGGGGG	chr7:73609000-73609283(+)$1	283	97	104	13.1311
NNNNNBB	chr3:38167991-38168250(-)$1	259	7	14	13.4590
ggggccc	chr16:30080580-30080801(+)$1	221	8	15	13.1311
22ggggg	chr2:219130686-219130942(-)$1	256	162	169	13.2950
e:CCCCC	chr14:102496399-102496636(+)$1	237	138	145	13.3770
dd:::bb	chr11:61605180-61605461(+)$1	281	150	157	13.2131
}GGGGGG	chr11:32610995-32611261(+)$1	266	186	193	12.8852
CCC{CCC	chr3:184042956-184043173(+)$1	217	28	35	17.3934
!eeeeee	chr16:30087540-30087875(+)$1	335	111	118	13.1311
hhhh[cc	chr20:47570040-47570316(+)$1	276	55	62	13.3770
vvvvvvv	chr19:8547975-8548194(+)$1	219	114	121	17.3934
c[a[bbo	chr2:85846256-85846508(+)$1	252	117	124	13.2131
fffffcc	chr2:96948935-96949168(-)$1	233	94	101	12.8032
ooooooc	chr19:39198678-39198910(+)$1	232	150	157	13.4590
HHH}III	chrX:77380799-77381022(+)$1	223	177	184	13.2950
::::===	chr2:220427022-220427271(-)$1	249	0	7	17.3934
ff:::::	chr12:57000316-57000603(-)$1	287	97	104	17.3934
FFFDDDD	chr12:50151943-50152158(+)$1	215	6	13	12.8852
llfffff	chr19:8553509-8553780(+)$1	271	142	149	13.2950
ffffff:	chr17:57754246-57754496(+)$1	250	117	124	13.2131
FFA{EEE	chr19:40325207-40325418(-)$1	211	113	120	12.9672
333ffff	chr1:8927963-8928187(-)$1	224	152	159	13.2950
a[eeeee	chr5:150496601-150496841(-)$1	240	109	116	17.3934
::BB}FF	chr17:4442990-4443254(-)$1	264	116	123	13.3770
qqqqqqq	chr2:219130048-219130285(-)$1	237	38	45	13.2950
B}FFFFF	chr7:5353147-5353382(-)$1	235	226	233	17.3934
nffffff	chr9:35060408-35060621(-)$1	213	60	67	13.2131
RRFFFFF	chr1:19201814-19202093(-)$1	279	19	26	12.9672
qqdddd:	chr5:179260054-179260316(+)$1	262	57	64	12.9672
B{BB{DD	chr11:67166486-67166735(-)$1	249	6	13	13.3770
mmmmfff	chr14:102431167-102431370(+)$1	203	17	24	12.9672
HHH::::	chr16:3712809-3713068(-)$1	259	5	12	17.3934
nnnnddd	chr9:136599016-136599277(-)$1	261	120	127	13.2950
rrrrrff	chr20:2444292-2444548(-)$1	256	158	165	12.9672
]ccc]bb	chr12:49521694-49521983(-)$1	289	183	190	17.3934

#DB
)))))))	chrX:47061936-47062206(+)$1	1	97	104	13.3770
(((((((	chr10:105200133-105200388(+)$1	1	106	113	17.3934
.....((	chr9:35714957-35715175(-)$1	1	15	22	13.2131
(((....	chr6:42980595-42980856(-)$1	1	12	19	17.3934
)))))))	chr1:160281654-160281885(-)$1	1	222	229	13.1311
..(((((	chr19:8520196-8520463(+)$1	1	145	152	17.3934
.(((.((	chr17:75494504-75494723(+)$1	1	25	32	12.9672
.......	chr17:27002013-27002247(+)$1	1	22	29	17.3934
(((.(((	chr4:122605790-122606027(-)$1	1	106	113	12.8852
).)))))	chr4:2886140-2886494(+)$1	1	329	336	12.8852
(.(((((	chr11:62489245-62489503(-)$1	1	11	18	13.3770
))))).)	chr5:228229-228549(+)$1	1	166	173	13.2950
.....))	chr1:156104204-156104419(+)$1	1	76	83	13.2950
...(((.	chr2:217026619-217026871(+)$1	1	145	152	13.4590
......)	chr4:10080455-10080709(-)$1	1	104	111	13.4590
.(((.((	chr1:120279745-120279990(+)$1	1	63	70	13.2950
((((..(	chrX:47062904-47063132(+)$1	1	98	105	13.1311
((((.((	chr11:62484465-62484756(-)$1	1	193	200	17.3934
).....)	chr22:39104759-39105062(+)$1	1	149	156	13.3770
..(((((	chr14:23945218-23945462(+)$1	1	34	41	17.3934
)))))))	chr16:28855210-28855462(-)$1	1	180	187	13.2131
.((..((	chr16:88643952-88644232(+)$1	1	71	78	17.3934
..)).))	chr12:6879222-6879433(+)$1	1	156	163	17.3934
)))))))	chr2:219294499-219294723(+)$1	1	199	206	17.3934
(.(((((	chr9:35059563-35059879(-)$1	1	142	149	13.2131
(((.(((	chr14:69347564-69347806(-)$1	1	62	69	13.2950
(((((((	chr7:73609000-73609283(+)$1	1	97	104	13.1311
.....((	chr3:38167991-38168250(-)$1	1	7	14	13.4590
(((((((	chr16:30080580-30080801(+)$1	1	8	15	13.1311
..)))))	chr2:219130686-219130942(-)$1	1	162	169	13.2950
).)))))	chr14:102496399-102496636(+)$1	1	138	145	13.3770
))...((	chr11:61605180-61605461(+)$1	1	150	157	13.2131
.))))))	chr11:32610995-32611261(+)$1	1	186	193	12.8852
(((.(((	chr3:184042956-184043173(+)$1	1	28	35	17.3934
.((((((	chr16:30087540-30087875(+)$1	1	111	118	13.1311
((((.((	chr20:47570040-47570316(+)$1	1	55	62	13.3770
.......	chr19:8547975-8548194(+)$1	1	114	121	17.3934
(.(.((.	chr2:85846256-85846508(+)$1	1	117	124	13.2131
)))))((	chr2:96948935-96949168(-)$1	1	94	101	12.8032
......)	chr19:39198678-39198910(+)$1	1	150	157	13.4590
))).)))	chrX:77380799-77381022(+)$1	1	177	184	13.2950
....(((	chr2:220427022-220427271(-)$1	1	0	7	17.3934
)).....	chr12:57000316-57000603(-)$1	1	97	104	17.3934
(((((((	chr12:50151943-50152158(+)$1	1	6	13	12.8852
..)))))	chr19:8553509-8553780(+)$1	1	142	149	13.2950
)))))).	chr17:57754246-57754496(+)$1	1	117	124	13.2131
(((.(((	chr19:40325207-40325418(-)$1	1	113	120	12.9672
...))))	chr1:8927963-8928187(-)$1	1	152	159	13.2950
(.(((((	chr5:150496601-150496841(-)$1	1	109	116	17.3934
..)).))	chr17:4442990-4443254(-)$1	1	116	123	13.3770
.......	chr2:219130048-219130285(-)$1	1	38	45	13.2950
).)))))	chr7:5353147-5353382(-)$1	1	226	233	17.3934
.))))))	chr9:35060408-35060621(-)$1	1	60	67	13.2131
..(((((	chr1:19201814-19202093(-)$1	1	19	26	12.9672
..)))).	chr5:179260054-179260316(+)$1	1	57	64	12.9672
(.((.((	chr11:67166486-67166735(-)$1	1	6	13	13.3770
....)))	chr14:102431167-102431370(+)$1	1	17	24	12.9672
(((....	chr16:3712809-3713068(-)$1	1	5	12	17.3934
....)))	chr9:136599016-136599277(-)$1	1	120	127	13.2950
.....))	chr20:2444292-2444548(-)$1	1	158	165	12.9672
.))).))	chr12:49521694-49521983(-)$1	1	183	190	17.3934

#PSSM
G : 0.85	C : 0.06	A : 0.04	g : 0.01	U : 0.01	
A : 0.86	U : 0.04	C : 0.03	G : 0.03	a : 0.01	
G : 0.91	U : 0.03	A : 0.03	g : 0.01	
G : 0.91	C : 0.04	g : 0.01	A : 0.01	
A : 0.88	U : 0.08	a : 0.01	C : 0.01	
G : 0.83	A : 0.06	U : 0.04	C : 0.03	g : 0.01	
G : 0.88	C : 0.06	g : 0.01	A : 0.01	U : 0.01	

#score	876.4098360655747
#seq	61
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_UTR_m3_run2.nuc.txt

#NT
CUUCUUUG	chr19:49606309-49606566(+)$1	257	155	163	11.8000
UUUCUUUG	chr19:49605887-49606142(+)$1	255	242	250	13.8000
UUUCCCUG	chr17:46051772-46052129(+)$1	357	207	215	13.6000
UUUCUCUG	chr2:17934125-17934390(-)$1	265	35	43	17.4000
GUUCUCUG	chr1:203764779-203765030(+)$1	251	135	143	16.0000
UUUCUCUU	chr17:25635567-25635798(+)$1	231	49	57	15.8000
GUUCCCUG	chr11:122932366-122932611(-)$1	245	162	170	12.2000
UUUCUGUG	chr8:110346528-110346753(+)$1	225	42	50	14.0000
GUUCUCUG	chr1:1327778-1328069(-)$1	291	49	57	16.0000
UUUCUCUU	chr17:25635508-25635767(+)$1	259	108	116	15.8000
GUUCUCUA	chr17:61909382-61909669(-)$1	287	49	57	13.4000
UUUCUGUG	chr8:110346478-110346728(+)$1	250	92	100	14.0000
UUUCUCAG	chr6:31802965-31803193(+)$1	228	155	163	13.2000
CUUCUCUU	chr19:54972759-54972990(+)$1	231	156	164	13.8000
UUUCCCUG	chr7:26230680-26230930(-)$1	250	162	170	13.6000
UUUCUGUG	chr8:110346553-110346808(+)$1	255	17	25	14.0000
UUUCUCUU	chr17:25635435-25635708(+)$1	273	181	189	15.8000
GUUCUCUU	chr15:69071858-69072105(-)$1	247	11	19	14.4000
CUUCUCAG	chr18:43671546-43671779(-)$1	233	173	181	11.2000
GUUCUCUA	chr17:61909469-61909689(-)$1	220	69	77	13.4000
UGUCUCUG	chr15:91446141-91446421(+)$1	280	205	213	13.2000
UGUCUCUG	chr17:76200657-76200965(+)$1	308	68	76	13.2000
GUUCUCUU	chr16:31201578-31201815(+)$1	237	167	175	14.4000
CUUCUCUU	chr19:54972731-54972959(+)$1	228	184	192	13.8000

#otherMatches

#Struct PSSM
dd[ggggg	chr3:41281088-41281351(+)$1	263	45	53	14.6000
c]ffffff	chr19:49606309-49606566(+)$1	257	155	163	11.8000
eeccc22c	chr19:49605887-49606142(+)$1	255	242	250	13.8000
===bbbbf	chr17:46051772-46052129(+)$1	357	207	215	13.6000
JJJJJJJJ	chr2:17934125-17934390(-)$1	265	35	43	17.4000
c4444eee	chr1:203764779-203765030(+)$1	251	135	143	16.0000
HHHHHHHH	chr17:25635567-25635798(+)$1	231	49	57	15.8000
}HHHHHHH	chr11:122932366-122932611(-)$1	245	162	170	12.2000
ffffffBB	chr8:110346528-110346753(+)$1	225	42	50	14.0000
cc"""a[b	chr1:1327778-1328069(-)$1	291	49	57	16.0000
d:::::::	chr17:25635508-25635767(+)$1	259	108	116	15.8000
IIIccc!!	chr17:61909382-61909669(-)$1	287	49	57	13.4000
hhhhhh22	chr8:110346478-110346728(+)$1	250	92	100	14.0000
YYBB}AYY	chr6:31802965-31803193(+)$1	228	155	163	13.2000
zzzzzzzz	chr19:54972759-54972990(+)$1	231	156	164	13.8000
$ddddnnn	chr7:26230680-26230930(-)$1	250	162	170	13.6000
dddd::::	chr8:110346553-110346808(+)$1	255	17	25	14.0000
d:::::JJ	chr17:25635435-25635708(+)$1	273	181	189	15.8000
EE:::::c	chr15:69071858-69072105(-)$1	247	11	19	14.4000
AYYFFFFF	chr18:43671546-43671779(-)$1	233	173	181	11.2000
ddddccc[	chr17:61909469-61909689(-)$1	220	69	77	13.4000
ccc22bb]	chr15:91446141-91446421(+)$1	280	205	213	13.2000
{CCCDDDD	chr17:76200657-76200965(+)$1	308	68	76	13.2000
((((((((	chr16:31201578-31201815(+)$1	237	167	175	14.4000
zzzzzzzz	chr19:54972731-54972959(+)$1	228	184	192	13.8000

#DB
((.(((((	chr3:41281088-41281351(+)$1	1	45	53	14.6000
).))))))	chr19:49606309-49606566(+)$1	1	155	163	11.8000
)))))..)	chr19:49605887-49606142(+)$1	1	242	250	13.8000
))))))))	chr17:46051772-46052129(+)$1	1	207	215	13.6000
((((((((	chr2:17934125-17934390(-)$1	1	35	43	17.4000
)....)))	chr1:203764779-203765030(+)$1	1	135	143	16.0000
((((((((	chr17:25635567-25635798(+)$1	1	49	57	15.8000
.)))))))	chr11:122932366-122932611(-)$1	1	162	170	12.2000
))))))((	chr8:110346528-110346753(+)$1	1	42	50	14.0000
((...(.(	chr1:1327778-1328069(-)$1	1	49	57	16.0000
).......	chr17:25635508-25635767(+)$1	1	108	116	15.8000
((((((..	chr17:61909382-61909669(-)$1	1	49	57	13.4000
))))))..	chr8:110346478-110346728(+)$1	1	92	100	14.0000
..)).)..	chr6:31802965-31803193(+)$1	1	155	163	13.2000
........	chr19:54972759-54972990(+)$1	1	156	164	13.8000
.((((...	chr7:26230680-26230930(-)$1	1	162	170	13.6000
))))....	chr8:110346553-110346808(+)$1	1	17	25	14.0000
).....))	chr17:25635435-25635708(+)$1	1	181	189	15.8000
((.....(	chr15:69071858-69072105(-)$1	1	11	19	14.4000
)..)))))	chr18:43671546-43671779(-)$1	1	173	181	11.2000
(((((((.	chr17:61909469-61909689(-)$1	1	69	77	13.4000
)))..)).	chr15:91446141-91446421(+)$1	1	205	213	13.2000
.(((((((	chr17:76200657-76200965(+)$1	1	68	76	13.2000
........	chr16:31201578-31201815(+)$1	1	167	175	14.4000
........	chr19:54972731-54972959(+)$1	1	184	192	13.8000

#PSSM
U : 0.55	G : 0.28	C : 0.16	
U : 0.92	G : 0.08	
U : 1.00	
C : 1.00	
U : 0.88	C : 0.12	
C : 0.80	G : 0.12	U : 0.08	
U : 0.92	A : 0.08	
G : 0.60	U : 0.28	A : 0.08	C : 0.04	

#score	352.4
#seq	25
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_UTR_m2_run1.nuc.txt

#NT
UUCCCAUCUCCACUGCCCCUCGGCCCUGUCUGUGCCCUGCCUCUCAGAGGAGGGGGCUCAGAUGGUGCGGCCUGAGUGUGCGGCCGGCGGCAUUUGGGAUACACCCGUAGGGUGGGCGGGGUGUGUCCCAGGCCUAAUUCCAUCUUUCCACCAUGACAGAGAUGCCCUUGUGAGGCUGGCCUCCUUG	chr11:2152333-2152535(-)$1	202	1	188	561.0000

#otherMatches

#Struct PSSM
:::::::::bb[dddda[cccddddggggggg[eeeee[ddddllldddd22eeeee]ggggggg333dddd]ccc]a]dddd22bb:ccc!!=============uuuuuuuuuuuu=============ccc::::::::::::::::::::eeeee[a[dddd"""a[ddddmmmmdddda22d	chr11:2152335-2152542(-)$1	207	8	195	561.0000
:::::::::bb[dddda[cccddddggggggg[eeeee[ddddllldddd22eeeee]ggggggg333dddd]ccc]a]dddd22bb:ccc!!=============uuuuuuuuuuuu=============ccc::::::::::::::::::::eeeee[a[dddd"""a[ddddmmmmdddda22d	chr11:2152333-2152535(-)$1	202	1	188	561.0000

#DB
.........((.(((((.((((((((((((((.(((((.((((...))))..))))).)))))))...)))).))).).))))..)).(((..(((((((((((((............))))))))))))))))....................(((((.(.((((...(.((((....)))))..)	chr11:2152335-2152542(-)$1	1	8	195	561.0000
.........((.(((((.((((((((((((((.(((((.((((...))))..))))).)))))))...)))).))).).))))..)).(((..(((((((((((((............))))))))))))))))....................(((((.(.((((...(.((((....)))))..)	chr11:2152333-2152535(-)$1	1	1	188	561.0000

#PSSM
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	

#score	1122.0
#seq	2
#width	187
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_transcript_m1_run1.nuc.txt

#NT
GCAGCC	chr12:123997898-123998223(-)$1	325	295	301	14.6129
GCAGCC	chr11:2154691-2154896(-)$1	205	28	34	14.6129
GCAGCU	chr10:5810185-5810448(-)$1	263	115	121	10.9838
GCAGCA	chr9:99083293-99083539(-)$1	246	23	29	11.1451
GCAGCU	chr7:107592402-107592680(-)$1	278	151	157	10.9838
gcagac	chr6:159048183-159048437(+)$1	254	212	218	10.5806
GCAGCC	chr11:8707183-8707398(+)$1	215	79	85	14.6129
GCAGCU	chr22:35740308-35740558(+)$1	250	73	79	10.9838
GCUGCC	chr19:58905950-58906156(+)$1	206	3	9	11.1451
GCAGCA	chr11:2152557-2152762(-)$1	205	8	14	11.1451
GCAGCC	chr21:46858678-46859001(+)$1	323	51	57	14.6129
GCAGCA	chr16:81584057-81584351(+)$1	294	48	54	11.1451
GCAGCA	chr11:65194778-65194989(+)$1	211	0	6	11.1451
GCUGCC	chr3:12877487-12877699(-)$1	212	41	47	11.1451
CCAGCC	chr16:10626018-10626261(-)$1	243	53	59	10.8225
GCAGCA	chr11:2152718-2152924(-)$1	206	170	176	11.1451
GCAGCC	chr20:2125222-2125516(+)$1	294	0	6	14.6129
GCAGGC	chr9:116026162-116026413(+)$1	251	64	70	10.4999
GCAGCC	chr11:70483680-70483944(-)$1	264	41	47	14.6129
GCUGCC	chr11:2150438-2150646(-)$1	208	8	14	11.1451
GCAGCC	chr11:2154770-2154982(-)$1	212	114	120	14.6129
CCAGCC	chr11:62286661-62286896(-)$1	235	165	171	10.8225
ACAGCC	chr17:33951416-33951706(+)$1	290	98	104	10.9032
GCAGCC	chr11:63880072-63880357(-)$1	285	33	39	14.6129
GCAGCC	chr11:2150816-2151020(-)$1	204	8	14	14.6129
GCAGCC	chr11:2150805-2151013(-)$1	208	1	7	14.6129
GCAGCC	chr19:1986162-1986451(-)$1	289	7	13	14.6129
GCGGCC	chr11:2152364-2152574(-)$1	210	106	112	10.7419
GCAGGC	chr12:57601722-57601941(+)$1	219	19	25	10.4999
GCUGCC	chr16:28109516-28109810(-)$1	294	75	81	11.1451
UCAGCC	chr2:21235962-21236185(-)$1	223	85	91	10.6612
GCAGCC	chr11:2160072-2160281(-)$1	209	18	24	14.6129
GCGGCC	chr20:48769976-48770242(-)$1	266	11	17	10.7419
GCAGCA	chr11:2152570-2152772(-)$1	202	18	24	11.1451
ACAGCC	chr19:1497719-1497968(+)$1	249	14	20	10.9032
GCUGCC	chr19:18685769-18685981(+)$1	212	47	53	11.1451
GCAGCU	chr1:24020196-24020398(+)$1	202	96	102	10.9838
GCAGCC	chr11:2151069-2151271(-)$1	202	162	168	14.6129
GCAGCC	chr20:60963264-60963469(+)$1	205	52	58	14.6129
GCAGCC	chr11:2151027-2151232(-)$1	205	123	129	14.6129
GCAGCC	chr11:2151066-2151268(-)$1	202	159	165	14.6129
ccagcc	chr9:136799074-136799351(-)$1	277	132	138	10.8225
GCAGGC	chr11:2154314-2154525(-)$1	211	37	43	10.4999
acagcc	chr21:44089857-44090153(+)$1	296	85	91	10.9032
GCAGCU	chr22:35740231-35740501(+)$1	270	150	156	10.9838
GCUGCC	chr11:2156617-2156824(-)$1	207	29	35	11.1451
GCGGCC	chr11:2152264-2152468(-)$1	204	0	6	10.7419
GCAGCC	chr17:40731938-40732222(-)$1	284	46	52	14.6129
UCAGCC	chr5:149827114-149827320(-)$1	206	67	73	10.6612
GCAGCC	chr11:2151032-2151236(-)$1	204	127	133	14.6129
ACAGCC	chr7:158232778-158233022(-)$1	244	3	9	10.9032
GCUGCC	chr22:41922182-41922447(+)$1	265	3	9	11.1451
CCAGCC	chr2:20205726-20205972(-)$1	246	26	32	10.8225
GCAGCC	chr11:2153998-2154205(-)$1	207	8	14	14.6129
GCAGCC	chr9:108118391-108118697(+)$1	306	7	13	14.6129
GCAGAC	chr21:46845495-46845794(+)$1	299	9	15	10.5806
GCUGCC	chr16:90001034-90001292(+)$1	258	5	11	11.1451
GCAGAC	chr6:75964866-75965113(-)$1	247	96	102	10.5806
GCAGUC	chr12:1897311-1897608(+)$1	297	3	9	10.3387
GCAGAC	chr6:33243495-33243712(+)$1	217	117	123	10.5806
ACAGCC	chr6:2376585-2376902(+)$1	317	279	285	10.9032

#otherMatches

#Struct PSSM
FFF:::	chr11:2152554-2152757(-)$1	203	3	9	11.1451
ddcccF	chr12:123997898-123998223(-)$1	325	295	301	14.6129
hhhhh[	chr11:2154691-2154896(-)$1	205	28	34	14.6129
ccccc2	chr10:5810185-5810448(-)$1	263	115	121	10.9838
GGGG{C	chr9:99083293-99083539(-)$1	246	23	29	11.1451
DDD}JJ	chr7:107592402-107592680(-)$1	278	151	157	10.9838
oooggg	chr6:159048183-159048437(+)$1	254	212	218	10.5806
DDDddd	chr11:8707183-8707398(+)$1	215	79	85	14.6129
gggggg	chr22:35740308-35740558(+)$1	250	73	79	10.9838
:ddddm	chr19:58905950-58906156(+)$1	206	3	9	11.1451
FFF:::	chr11:2152557-2152762(-)$1	205	8	14	11.1451
:::ccc	chr21:46858678-46859001(+)$1	323	51	57	14.6129
ddd444	chr16:81584057-81584351(+)$1	294	48	54	11.1451
::::::	chr11:65194778-65194989(+)$1	211	0	6	11.1451
dddd&&	chr3:12877487-12877699(-)$1	212	41	47	11.1451
555ddd	chr16:10626018-10626261(-)$1	243	53	59	10.8225
AYYBB:	chr11:2152718-2152924(-)$1	206	170	176	11.1451
GGGGGG	chr20:2125222-2125516(+)$1	294	0	6	14.6129
iiii!!	chr9:116026162-116026413(+)$1	251	64	70	10.4999
f!!ggg	chr11:70483680-70483944(-)$1	264	41	47	14.6129
hhhhh!	chr11:2150438-2150646(-)$1	208	8	14	11.1451
:::ddd	chr11:2154770-2154982(-)$1	212	114	120	14.6129
c[ccc[	chr11:62286661-62286896(-)$1	235	165	171	10.8225
JJLLLC	chr17:33951416-33951706(+)$1	290	98	104	10.9032
======	chr11:63880072-63880357(-)$1	285	33	39	14.6129
wwwwww	chr11:2150816-2151020(-)$1	204	8	14	14.6129
:CCC{D	chr11:2150805-2151013(-)$1	208	1	7	14.6129
HHHHHH	chr19:1986162-1986451(-)$1	289	7	13	14.6129
33dddd	chr11:2152364-2152574(-)$1	210	106	112	10.7419
2fffff	chr12:57601722-57601941(+)$1	219	19	25	10.4999
mmccc]	chr16:28109516-28109810(-)$1	294	75	81	11.1451
iiiiii	chr2:21235962-21236185(-)$1	223	85	91	10.6612
D{EEEE	chr11:2160072-2160281(-)$1	209	18	24	14.6129
!ddddg	chr20:48769976-48770242(-)$1	266	11	17	10.7419
tttttt	chr11:2152570-2152772(-)$1	202	18	24	11.1451
wwwwcc	chr19:1497719-1497968(+)$1	249	14	20	10.9032
hhdddd	chr19:18685769-18685981(+)$1	212	47	53	11.1451
6666ee	chr1:24020196-24020398(+)$1	202	96	102	10.9838
gggggg	chr11:2151069-2151271(-)$1	202	162	168	14.6129
blllbb	chr20:60963264-60963469(+)$1	205	52	58	14.6129
gggggg	chr11:2151027-2151232(-)$1	205	123	129	14.6129
gggggg	chr11:2151066-2151268(-)$1	202	159	165	14.6129
::::::	chr9:136799074-136799351(-)$1	277	132	138	10.8225
eeeemm	chr11:2154314-2154525(-)$1	211	37	43	10.4999
GGGNNN	chr21:44089857-44090153(+)$1	296	85	91	10.9032
gggggg	chr22:35740231-35740501(+)$1	270	150	156	10.9838
b]ffff	chr11:2156617-2156824(-)$1	207	29	35	11.1451
ddddii	chr11:2152264-2152468(-)$1	204	0	6	10.7419
gggggg	chr17:40731938-40732222(-)$1	284	46	52	14.6129
NNNEEE	chr5:149827114-149827320(-)$1	206	67	73	10.6612
gggggg	chr11:2151032-2151236(-)$1	204	127	133	14.6129
HHHHHH	chr7:158232778-158233022(-)$1	244	3	9	10.9032
:::bb[	chr22:41922182-41922447(+)$1	265	3	9	11.1451
ddd[cc	chr2:20205726-20205972(-)$1	246	26	32	10.8225
ffff""	chr11:2153998-2154205(-)$1	207	8	14	14.6129
H::hhh	chr9:108118391-108118697(+)$1	306	7	13	14.6129
dddmmm	chr21:46845495-46845794(+)$1	299	9	15	10.5806
:::CCC	chr16:90001034-90001292(+)$1	258	5	11	11.1451
fffffr	chr6:75964866-75965113(-)$1	247	96	102	10.5806
dmmmmd	chr12:1897311-1897608(+)$1	297	3	9	10.3387
wwwwww	chr6:33243495-33243712(+)$1	217	117	123	10.5806
ssssss	chr6:2376585-2376902(+)$1	317	279	285	10.9032

#DB
(((...	chr11:2152554-2152757(-)$1	1	3	9	11.1451
))))))	chr12:123997898-123998223(-)$1	1	295	301	14.6129
(((((.	chr11:2154691-2154896(-)$1	1	28	34	14.6129
))))).	chr10:5810185-5810448(-)$1	1	115	121	10.9838
((((.(	chr9:99083293-99083539(-)$1	1	23	29	11.1451
))).))	chr7:107592402-107592680(-)$1	1	151	157	10.9838
...)))	chr6:159048183-159048437(+)$1	1	212	218	10.5806
((((((	chr11:8707183-8707398(+)$1	1	79	85	14.6129
((((((	chr22:35740308-35740558(+)$1	1	73	79	10.9838
.((((.	chr19:58905950-58906156(+)$1	1	3	9	11.1451
(((...	chr11:2152557-2152762(-)$1	1	8	14	11.1451
...(((	chr21:46858678-46859001(+)$1	1	51	57	14.6129
)))...	chr16:81584057-81584351(+)$1	1	48	54	11.1451
......	chr11:65194778-65194989(+)$1	1	0	6	11.1451
((((..	chr3:12877487-12877699(-)$1	1	41	47	11.1451
...)))	chr16:10626018-10626261(-)$1	1	53	59	10.8225
)..)).	chr11:2152718-2152924(-)$1	1	170	176	11.1451
((((((	chr20:2125222-2125516(+)$1	1	0	6	14.6129
((((..	chr9:116026162-116026413(+)$1	1	64	70	10.4999
(..(((	chr11:70483680-70483944(-)$1	1	41	47	14.6129
(((((.	chr11:2150438-2150646(-)$1	1	8	14	11.1451
...(((	chr11:2154770-2154982(-)$1	1	114	120	14.6129
(.(((.	chr11:62286661-62286896(-)$1	1	165	171	10.8225
((...(	chr17:33951416-33951706(+)$1	1	98	104	10.9032
((((((	chr11:63880072-63880357(-)$1	1	33	39	14.6129
......	chr11:2150816-2151020(-)$1	1	8	14	14.6129
.(((.(	chr11:2150805-2151013(-)$1	1	1	7	14.6129
((((((	chr19:1986162-1986451(-)$1	1	7	13	14.6129
..))))	chr11:2152364-2152574(-)$1	1	106	112	10.7419
.)))))	chr12:57601722-57601941(+)$1	1	19	25	10.4999
..))).	chr16:28109516-28109810(-)$1	1	75	81	11.1451
((((((	chr2:21235962-21236185(-)$1	1	85	91	10.6612
(.((((	chr11:2160072-2160281(-)$1	1	18	24	14.6129
.(((((	chr20:48769976-48770242(-)$1	1	11	17	10.7419
......	chr11:2152570-2152772(-)$1	1	18	24	11.1451
....))	chr19:1497719-1497968(+)$1	1	14	20	10.9032
((((((	chr19:18685769-18685981(+)$1	1	47	53	11.1451
....))	chr1:24020196-24020398(+)$1	1	96	102	10.9838
))))))	chr11:2151069-2151271(-)$1	1	162	168	14.6129
(...))	chr20:60963264-60963469(+)$1	1	52	58	14.6129
))))))	chr11:2151027-2151232(-)$1	1	123	129	14.6129
))))))	chr11:2151066-2151268(-)$1	1	159	165	14.6129
......	chr9:136799074-136799351(-)$1	1	132	138	10.8225
((((..	chr11:2154314-2154525(-)$1	1	37	43	10.4999
(((...	chr21:44089857-44090153(+)$1	1	85	91	10.9032
((((((	chr22:35740231-35740501(+)$1	1	150	156	10.9838
).))))	chr11:2156617-2156824(-)$1	1	29	35	11.1451
((((((	chr11:2152264-2152468(-)$1	1	0	6	10.7419
))))))	chr17:40731938-40732222(-)$1	1	46	52	14.6129
...(((	chr5:149827114-149827320(-)$1	1	67	73	10.6612
))))))	chr11:2151032-2151236(-)$1	1	127	133	14.6129
((((((	chr7:158232778-158233022(-)$1	1	3	9	10.9032
...((.	chr22:41922182-41922447(+)$1	1	3	9	11.1451
(((.((	chr2:20205726-20205972(-)$1	1	26	32	10.8225
((((..	chr11:2153998-2154205(-)$1	1	8	14	14.6129
(..(((	chr9:108118391-108118697(+)$1	1	7	13	14.6129
(((...	chr21:46845495-46845794(+)$1	1	9	15	10.5806
...(((	chr16:90001034-90001292(+)$1	1	5	11	11.1451
(((((.	chr6:75964866-75965113(-)$1	1	96	102	10.5806
(....)	chr12:1897311-1897608(+)$1	1	3	9	10.3387
......	chr6:33243495-33243712(+)$1	1	117	123	10.5806
......	chr6:2376585-2376902(+)$1	1	279	285	10.9032

#PSSM
G : 0.80	A : 0.06	C : 0.04	U : 0.03	g : 0.01	c : 0.01	a : 0.01	
C : 0.95	c : 0.04	
A : 0.77	U : 0.12	a : 0.04	G : 0.04	
G : 0.95	g : 0.04	
C : 0.83	G : 0.04	A : 0.04	c : 0.03	a : 0.01	U : 0.01	
C : 0.75	A : 0.11	U : 0.08	c : 0.04	

#score	749.870967741935
#seq	62
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_UTR_m1_run2.nuc.txt

#NT
UUC	chr9:88292352-88292605(-)$1	253	8	11	9.0000
UUC	chr19:47242041-47242308(-)$1	267	175	178	9.0000
UUC	chr14:21967152-21967427(-)$1	275	4	7	9.0000
UUC	chr1:236705912-236706170(+)$1	258	84	87	9.0000
UUC	chr8:42914080-42914368(+)$1	288	105	108	9.0000
UUC	chr3:167422543-167422798(-)$1	255	27	30	9.0000
uuc	chr16:3727516-3727817(-)$1	301	10	13	9.0000
UUC	chr8:30915748-30915994(+)$1	246	42	45	9.0000
UUC	chr14:103986269-103986521(-)$1	252	17	20	9.0000
UUC	chr15:101825158-101825428(-)$1	270	21	24	9.0000
UUC	chr17:40630323-40630605(+)$1	282	105	108	9.0000
UUC	chr3:47851985-47852282(+)$1	297	1	4	9.0000
UUC	chrX:153648199-153648487(+)$1	288	150	153	9.0000
UUC	chr1:90487657-90487916(+)$1	259	103	106	9.0000
UUC	chr19:15480800-15481086(-)$1	286	90	93	9.0000
UUC	chr12:123004986-123005269(-)$1	283	26	29	9.0000
UUC	chr11:13743119-13743417(+)$1	298	7	10	9.0000
UUC	chr20:44521714-44521968(+)$1	254	48	51	9.0000
UUC	chr3:50099249-50099518(+)$1	269	23	26	9.0000
UUC	chr11:73554178-73554424(+)$1	246	18	21	9.0000
UUC	chr18:2750239-2750472(+)$1	233	17	20	9.0000
UUC	chr1:154920038-154920340(-)$1	302	2	5	9.0000
UUC	chr15:43482367-43482630(+)$1	263	19	22	9.0000
UUC	chr14:21731869-21732145(-)$1	276	11	14	9.0000
UUC	chr19:5609964-5610221(-)$1	257	66	69	9.0000
UUC	chr17:79479292-79479557(-)$1	265	24	27	9.0000
UUC	chr12:51399362-51399617(-)$1	255	76	79	9.0000
UUC	chr1:161140314-161140553(+)$1	239	26	29	9.0000
UUC	chr17:79681834-79682088(+)$1	254	6	9	9.0000
UUC	chr11:118926879-118927118(-)$1	239	32	35	9.0000
UUC	chr14:89029728-89029996(+)$1	268	218	221	9.0000
UUC	chr16:3729685-3729971(-)$1	286	38	41	9.0000
UUC	chr12:133245190-133245441(-)$1	251	57	60	9.0000
UUC	chr8:22033499-22033838(+)$1	339	107	110	9.0000
UUC	chr6:13615762-13616046(+)$1	284	32	35	9.0000
UUC	chr5:74638252-74638536(+)$1	284	5	8	9.0000
UUC	chr5:176918027-176918301(-)$1	274	130	133	9.0000
UUC	chr8:19708996-19709267(+)$1	271	29	32	9.0000
UUC	chr7:100285811-100286074(-)$1	263	100	103	9.0000
UUC	chr11:14520386-14520663(-)$1	277	43	46	9.0000
UUC	chr10:28884499-28884779(+)$1	280	92	95	9.0000
UUC	chr1:26149970-26150252(+)$1	282	73	76	9.0000
UUC	chr2:97504814-97505088(-)$1	274	18	21	9.0000
UUC	chr2:173426815-173427078(+)$1	263	22	25	9.0000
UUC	chr16:1411725-1411977(+)$1	252	12	15	9.0000
UUC	chr8:23425680-23425914(+)$1	234	52	55	9.0000
UUC	chr5:178032221-178032536(-)$1	315	13	16	9.0000
UUC	chr19:16630022-16630307(-)$1	285	32	35	9.0000
UUC	chr3:196663811-196664095(-)$1	284	30	33	9.0000
UUC	chr7:102964885-102965158(-)$1	273	12	15	9.0000
UUC	chr11:118886348-118886579(-)$1	231	83	86	9.0000
UUC	chr16:4871317-4871619(-)$1	302	3	6	9.0000
UUC	chr11:114320416-114320702(+)$1	286	0	3	9.0000
UUC	chr21:36231753-36232038(-)$1	285	7	10	9.0000
UUC	chr12:122967109-122967379(-)$1	270	36	39	9.0000
UUC	chr3:9476378-9476665(+)$1	287	58	61	9.0000
UUC	chr16:90106559-90106818(+)$1	259	53	56	9.0000
UUC	chr16:31202608-31202855(+)$1	247	169	172	9.0000
UUC	chr9:140348891-140349146(-)$1	255	37	40	9.0000
UUC	chr11:64569091-64569357(-)$1	266	6	9	9.0000
UUC	chr9:95060492-95060771(-)$1	279	65	68	9.0000
UUC	chr20:60963360-60963612(+)$1	252	18	21	9.0000
UUC	chr15:58302858-58303129(-)$1	271	21	24	9.0000
UUC	chr1:19665987-19666259(-)$1	272	113	116	9.0000
UUC	chr19:47285664-47285944(-)$1	280	109	112	9.0000
UUC	chr17:27438745-27438989(-)$1	244	19	22	9.0000
UUC	chr6:158053720-158054001(+)$1	281	43	46	9.0000
UUC	chrX:154282724-154283007(+)$1	283	86	89	9.0000
UUC	chr7:99048202-99048451(+)$1	249	181	184	9.0000
UUC	chrX:47427974-47428239(+)$1	265	104	107	9.0000
UUC	chr11:64081262-64081523(+)$1	261	44	47	9.0000
UUC	chr8:82629348-82629639(-)$1	291	59	62	9.0000
uuc	chr7:23385546-23385844(-)$1	298	57	60	9.0000
UUC	chr11:71671626-71671931(+)$1	305	72	75	9.0000
UUC	chr2:170460396-170460659(+)$1	263	33	36	9.0000
UUC	chr4:83345890-83346191(-)$1	301	83	86	9.0000
UUC	chr17:79653870-79654141(+)$1	271	34	37	9.0000
UUC	chr3:49135799-49136066(-)$1	267	53	56	9.0000
UUC	chr15:63845766-63846034(+)$1	268	2	5	9.0000
UUC	chr12:7031349-7031643(+)$1	294	28	31	9.0000
UUC	chr12:57883866-57884123(+)$1	257	101	104	9.0000
UUC	chr11:62378925-62379203(-)$1	278	7	10	9.0000
UUC	chr5:141008766-141009018(-)$1	252	33	36	9.0000
UUC	chr11:64137888-64138175(+)$1	287	127	130	9.0000
UUC	chr19:54972074-54972288(+)$1	214	28	31	9.0000
UUC	chr15:90766918-90767174(+)$1	256	28	31	9.0000
UUC	chr2:32431811-32432104(+)$1	293	9	12	9.0000
UUC	chr10:33224364-33224618(-)$1	254	67	70	9.0000
UUC	chrX:153626696-153626929(+)$1	233	25	28	9.0000
UUC	chr2:39993132-39993394(-)$1	262	6	9	9.0000
uuc	chr8:141554291-141554548(-)$1	257	6	9	9.0000
UUC	chr5:178043802-178044101(-)$1	299	69	72	9.0000
UUC	chr2:130911948-130912203(-)$1	255	129	132	9.0000
UUC	chr4:142145488-142145767(+)$1	279	79	82	9.0000
UUC	chr12:6977865-6978128(+)$1	263	121	124	9.0000
uuc	chr2:220370550-220370820(+)$1	270	6	9	9.0000
UUC	chr16:1557165-1557415(+)$1	250	174	177	9.0000
UUC	chr19:10273903-10274172(-)$1	269	11	14	9.0000
UUC	chr4:166254342-166254610(+)$1	268	136	139	9.0000

#otherMatches

#Struct PSSM
CCC	chr15:101821860-101822103(-)$1	243	15	18	9.0000
!!d	chr9:88292352-88292605(-)$1	253	8	11	9.0000
888	chr19:47242041-47242308(-)$1	267	175	178	9.0000
:::	chr14:21967152-21967427(-)$1	275	4	7	9.0000
%%%	chr1:236705912-236706170(+)$1	258	84	87	9.0000
III	chr8:42914080-42914368(+)$1	288	105	108	9.0000
cc!	chr3:167422543-167422798(-)$1	255	27	30	9.0000
FFF	chr16:3727516-3727817(-)$1	301	10	13	9.0000
eee	chr8:30915748-30915994(+)$1	246	42	45	9.0000
lee	chr14:103986269-103986521(-)$1	252	17	20	9.0000
zzz	chr15:101825158-101825428(-)$1	270	21	24	9.0000
fff	chr17:40630323-40630605(+)$1	282	105	108	9.0000
CCC	chr3:47851985-47852282(+)$1	297	1	4	9.0000
:::	chrX:153648199-153648487(+)$1	288	150	153	9.0000
ggg	chr1:90487657-90487916(+)$1	259	103	106	9.0000
III	chr19:15480800-15481086(-)$1	286	90	93	9.0000
EEE	chr12:123004986-123005269(-)$1	283	26	29	9.0000
fff	chr11:13743119-13743417(+)$1	298	7	10	9.0000
HHH	chr20:44521714-44521968(+)$1	254	48	51	9.0000
EEE	chr3:50099249-50099518(+)$1	269	23	26	9.0000
obb	chr11:73554178-73554424(+)$1	246	18	21	9.0000
III	chr18:2750239-2750472(+)$1	233	17	20	9.0000
::b	chr1:154920038-154920340(-)$1	302	2	5	9.0000
HHU	chr15:43482367-43482630(+)$1	263	19	22	9.0000
ggg	chr14:21731869-21732145(-)$1	276	11	14	9.0000
##d	chr19:5609964-5610221(-)$1	257	66	69	9.0000
eeF	chr17:79479292-79479557(-)$1	265	24	27	9.0000
###	chr12:51399362-51399617(-)$1	255	76	79	9.0000
EEE	chr1:161140314-161140553(+)$1	239	26	29	9.0000
C{A	chr17:79681834-79682088(+)$1	254	6	9	9.0000
qqq	chr11:118926879-118927118(-)$1	239	32	35	9.0000
~~C	chr14:89029728-89029996(+)$1	268	218	221	9.0000
ooo	chr16:3729685-3729971(-)$1	286	38	41	9.0000
ppp	chr12:133245190-133245441(-)$1	251	57	60	9.0000
::D	chr8:22033499-22033838(+)$1	339	107	110	9.0000
qqq	chr6:13615762-13616046(+)$1	284	32	35	9.0000
ddd	chr5:74638252-74638536(+)$1	284	5	8	9.0000
"""	chr5:176918027-176918301(-)$1	274	130	133	9.0000
FF:	chr8:19708996-19709267(+)$1	271	29	32	9.0000
CCK	chr7:100285811-100286074(-)$1	263	100	103	9.0000
^^^	chr11:14520386-14520663(-)$1	277	43	46	9.0000
b]b	chr10:28884499-28884779(+)$1	280	92	95	9.0000
qqq	chr1:26149970-26150252(+)$1	282	73	76	9.0000
ggg	chr2:97504814-97505088(-)$1	274	18	21	9.0000
^^^	chr2:173426815-173427078(+)$1	263	22	25	9.0000
ooo	chr16:1411725-1411977(+)$1	252	12	15	9.0000
cdd	chr8:23425680-23425914(+)$1	234	52	55	9.0000
nnc	chr5:178032221-178032536(-)$1	315	13	16	9.0000
FFF	chr19:16630022-16630307(-)$1	285	32	35	9.0000
mmm	chr3:196663811-196664095(-)$1	284	30	33	9.0000
JJJ	chr7:102964885-102965158(-)$1	273	12	15	9.0000
ddd	chr11:118886348-118886579(-)$1	231	83	86	9.0000
EEE	chr16:4871317-4871619(-)$1	302	3	6	9.0000
EEE	chr11:114320416-114320702(+)$1	286	0	3	9.0000
ddd	chr21:36231753-36232038(-)$1	285	7	10	9.0000
KFF	chr12:122967109-122967379(-)$1	270	36	39	9.0000
cc]	chr3:9476378-9476665(+)$1	287	58	61	9.0000
eee	chr16:90106559-90106818(+)$1	259	53	56	9.0000
gg]	chr16:31202608-31202855(+)$1	247	169	172	9.0000
iii	chr9:140348891-140349146(-)$1	255	37	40	9.0000
fff	chr11:64569091-64569357(-)$1	266	6	9	9.0000
fdd	chr9:95060492-95060771(-)$1	279	65	68	9.0000
g[e	chr20:60963360-60963612(+)$1	252	18	21	9.0000
f!!	chr15:58302858-58303129(-)$1	271	21	24	9.0000
777	chr1:19665987-19666259(-)$1	272	113	116	9.0000
===	chr19:47285664-47285944(-)$1	280	109	112	9.0000
d]a	chr17:27438745-27438989(-)$1	244	19	22	9.0000
ccc	chr6:158053720-158054001(+)$1	281	43	46	9.0000
mdd	chrX:154282724-154283007(+)$1	283	86	89	9.0000
ooo	chr7:99048202-99048451(+)$1	249	181	184	9.0000
hhh	chrX:47427974-47428239(+)$1	265	104	107	9.0000
'''	chr11:64081262-64081523(+)$1	261	44	47	9.0000
ooo	chr8:82629348-82629639(-)$1	291	59	62	9.0000
EEE	chr7:23385546-23385844(-)$1	298	57	60	9.0000
+++	chr11:71671626-71671931(+)$1	305	72	75	9.0000
^^^	chr2:170460396-170460659(+)$1	263	33	36	9.0000
fff	chr4:83345890-83346191(-)$1	301	83	86	9.0000
CCC	chr17:79653870-79654141(+)$1	271	34	37	9.0000
:::	chr3:49135799-49136066(-)$1	267	53	56	9.0000
HHH	chr15:63845766-63846034(+)$1	268	2	5	9.0000
NNN	chr12:7031349-7031643(+)$1	294	28	31	9.0000
:::	chr12:57883866-57884123(+)$1	257	101	104	9.0000
FFF	chr11:62378925-62379203(-)$1	278	7	10	9.0000
:::	chr5:141008766-141009018(-)$1	252	33	36	9.0000
66c	chr11:64137888-64138175(+)$1	287	127	130	9.0000
fff	chr19:54972074-54972288(+)$1	214	28	31	9.0000
h&&	chr15:90766918-90767174(+)$1	256	28	31	9.0000
HSS	chr2:32431811-32432104(+)$1	293	9	12	9.0000
eee	chr10:33224364-33224618(-)$1	254	67	70	9.0000
:::	chrX:153626696-153626929(+)$1	233	25	28	9.0000
{CC	chr2:39993132-39993394(-)$1	262	6	9	9.0000
ee!	chr8:141554291-141554548(-)$1	257	6	9	9.0000
DDD	chr5:178043802-178044101(-)$1	299	69	72	9.0000
ppp	chr2:130911948-130912203(-)$1	255	129	132	9.0000
:::	chr4:142145488-142145767(+)$1	279	79	82	9.0000
ooo	chr12:6977865-6978128(+)$1	263	121	124	9.0000
JJJ	chr2:220370550-220370820(+)$1	270	6	9	9.0000
+++	chr16:1557165-1557415(+)$1	250	174	177	9.0000
nnn	chr19:10273903-10274172(-)$1	269	11	14	9.0000
qqq	chr4:166254342-166254610(+)$1	268	136	139	9.0000

#DB
(((	chr15:101821860-101822103(-)$1	1	15	18	9.0000
..(	chr9:88292352-88292605(-)$1	1	8	11	9.0000
...	chr19:47242041-47242308(-)$1	1	175	178	9.0000
...	chr14:21967152-21967427(-)$1	1	4	7	9.0000
...	chr1:236705912-236706170(+)$1	1	84	87	9.0000
(((	chr8:42914080-42914368(+)$1	1	105	108	9.0000
((.	chr3:167422543-167422798(-)$1	1	27	30	9.0000
(((	chr16:3727516-3727817(-)$1	1	10	13	9.0000
(((	chr8:30915748-30915994(+)$1	1	42	45	9.0000
.))	chr14:103986269-103986521(-)$1	1	17	20	9.0000
...	chr15:101825158-101825428(-)$1	1	21	24	9.0000
(((	chr17:40630323-40630605(+)$1	1	105	108	9.0000
(((	chr3:47851985-47852282(+)$1	1	1	4	9.0000
...	chrX:153648199-153648487(+)$1	1	150	153	9.0000
)))	chr1:90487657-90487916(+)$1	1	103	106	9.0000
(((	chr19:15480800-15481086(-)$1	1	90	93	9.0000
(((	chr12:123004986-123005269(-)$1	1	26	29	9.0000
(((	chr11:13743119-13743417(+)$1	1	7	10	9.0000
(((	chr20:44521714-44521968(+)$1	1	48	51	9.0000
(((	chr3:50099249-50099518(+)$1	1	23	26	9.0000
.))	chr11:73554178-73554424(+)$1	1	18	21	9.0000
(((	chr18:2750239-2750472(+)$1	1	17	20	9.0000
..(	chr1:154920038-154920340(-)$1	1	2	5	9.0000
((.	chr15:43482367-43482630(+)$1	1	19	22	9.0000
(((	chr14:21731869-21732145(-)$1	1	11	14	9.0000
..(	chr19:5609964-5610221(-)$1	1	66	69	9.0000
))(	chr17:79479292-79479557(-)$1	1	24	27	9.0000
...	chr12:51399362-51399617(-)$1	1	76	79	9.0000
(((	chr1:161140314-161140553(+)$1	1	26	29	9.0000
(.(	chr17:79681834-79682088(+)$1	1	6	9	9.0000
...	chr11:118926879-118927118(-)$1	1	32	35	9.0000
..)	chr14:89029728-89029996(+)$1	1	218	221	9.0000
...	chr16:3729685-3729971(-)$1	1	38	41	9.0000
...	chr12:133245190-133245441(-)$1	1	57	60	9.0000
..(	chr8:22033499-22033838(+)$1	1	107	110	9.0000
...	chr6:13615762-13616046(+)$1	1	32	35	9.0000
(((	chr5:74638252-74638536(+)$1	1	5	8	9.0000
...	chr5:176918027-176918301(-)$1	1	130	133	9.0000
((.	chr8:19708996-19709267(+)$1	1	29	32	9.0000
((.	chr7:100285811-100286074(-)$1	1	100	103	9.0000
...	chr11:14520386-14520663(-)$1	1	43	46	9.0000
).)	chr10:28884499-28884779(+)$1	1	92	95	9.0000
...	chr1:26149970-26150252(+)$1	1	73	76	9.0000
)))	chr2:97504814-97505088(-)$1	1	18	21	9.0000
...	chr2:173426815-173427078(+)$1	1	22	25	9.0000
...	chr16:1411725-1411977(+)$1	1	12	15	9.0000
(((	chr8:23425680-23425914(+)$1	1	52	55	9.0000
..)	chr5:178032221-178032536(-)$1	1	13	16	9.0000
(((	chr19:16630022-16630307(-)$1	1	32	35	9.0000
...	chr3:196663811-196664095(-)$1	1	30	33	9.0000
(((	chr7:102964885-102965158(-)$1	1	12	15	9.0000
(((	chr11:118886348-118886579(-)$1	1	83	86	9.0000
(((	chr16:4871317-4871619(-)$1	1	3	6	9.0000
(((	chr11:114320416-114320702(+)$1	1	0	3	9.0000
(((	chr21:36231753-36232038(-)$1	1	7	10	9.0000
.((	chr12:122967109-122967379(-)$1	1	36	39	9.0000
)).	chr3:9476378-9476665(+)$1	1	58	61	9.0000
(((	chr16:90106559-90106818(+)$1	1	53	56	9.0000
)).	chr16:31202608-31202855(+)$1	1	169	172	9.0000
)))	chr9:140348891-140349146(-)$1	1	37	40	9.0000
(((	chr11:64569091-64569357(-)$1	1	6	9	9.0000
(((	chr9:95060492-95060771(-)$1	1	65	68	9.0000
(.(	chr20:60963360-60963612(+)$1	1	18	21	9.0000
(..	chr15:58302858-58303129(-)$1	1	21	24	9.0000
...	chr1:19665987-19666259(-)$1	1	113	116	9.0000
(((	chr19:47285664-47285944(-)$1	1	109	112	9.0000
).)	chr17:27438745-27438989(-)$1	1	19	22	9.0000
)))	chr6:158053720-158054001(+)$1	1	43	46	9.0000
.))	chrX:154282724-154283007(+)$1	1	86	89	9.0000
...	chr7:99048202-99048451(+)$1	1	181	184	9.0000
)))	chrX:47427974-47428239(+)$1	1	104	107	9.0000
...	chr11:64081262-64081523(+)$1	1	44	47	9.0000
...	chr8:82629348-82629639(-)$1	1	59	62	9.0000
(((	chr7:23385546-23385844(-)$1	1	57	60	9.0000
...	chr11:71671626-71671931(+)$1	1	72	75	9.0000
...	chr2:170460396-170460659(+)$1	1	33	36	9.0000
(((	chr4:83345890-83346191(-)$1	1	83	86	9.0000
(((	chr17:79653870-79654141(+)$1	1	34	37	9.0000
...	chr3:49135799-49136066(-)$1	1	53	56	9.0000
(((	chr15:63845766-63846034(+)$1	1	2	5	9.0000
...	chr12:7031349-7031643(+)$1	1	28	31	9.0000
...	chr12:57883866-57884123(+)$1	1	101	104	9.0000
(((	chr11:62378925-62379203(-)$1	1	7	10	9.0000
...	chr5:141008766-141009018(-)$1	1	33	36	9.0000
..)	chr11:64137888-64138175(+)$1	1	127	130	9.0000
(((	chr19:54972074-54972288(+)$1	1	28	31	9.0000
(..	chr15:90766918-90767174(+)$1	1	28	31	9.0000
(..	chr2:32431811-32432104(+)$1	1	9	12	9.0000
)))	chr10:33224364-33224618(-)$1	1	67	70	9.0000
...	chrX:153626696-153626929(+)$1	1	25	28	9.0000
.((	chr2:39993132-39993394(-)$1	1	6	9	9.0000
((.	chr8:141554291-141554548(-)$1	1	6	9	9.0000
(((	chr5:178043802-178044101(-)$1	1	69	72	9.0000
...	chr2:130911948-130912203(-)$1	1	129	132	9.0000
...	chr4:142145488-142145767(+)$1	1	79	82	9.0000
...	chr12:6977865-6978128(+)$1	1	121	124	9.0000
(((	chr2:220370550-220370820(+)$1	1	6	9	9.0000
...	chr16:1557165-1557415(+)$1	1	174	177	9.0000
...	chr19:10273903-10274172(-)$1	1	11	14	9.0000
...	chr4:166254342-166254610(+)$1	1	136	139	9.0000

#PSSM
U : 0.95	u : 0.05	
U : 0.95	u : 0.05	
C : 0.95	c : 0.05	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_CDS_m1_run1.nuc.txt

#NT
GGCGG	chr7:128502891-128503157(+)$1	266	6	11	14.9999
GGCGG	chr17:76182929-76183198(-)$1	269	2	7	14.9999
GGCGG	chr18:51750528-51750846(-)$1	318	82	87	14.9999
GGCGG	chr1:156389913-156390216(-)$1	303	123	128	14.9999
GGCGG	chr17:27224484-27224735(-)$1	251	32	37	14.9999
GGCGG	chr8:124194893-124195201(+)$1	308	88	93	14.9999
GGCGG	chr19:18426749-18426976(-)$1	227	200	205	14.9999
ggcgg	chr19:18112127-18112448(+)$1	321	47	52	14.9999
GGCGG	chr10:75541720-75541992(+)$1	272	233	238	14.9999
GGCGG	chr19:18433728-18434003(-)$1	275	129	134	14.9999
GGCGG	chr19:13049356-13049610(+)$1	254	26	31	14.9999
GGCGG	chr16:23607427-23607700(-)$1	273	54	59	14.9999
GGCGG	chr1:248020654-248020898(+)$1	244	47	52	14.9999
GGCGG	chr19:1104001-1104224(+)$1	223	167	172	14.9999
GGCGG	chr9:99180180-99180411(-)$1	231	123	128	14.9999
GGCGG	chr1:111992357-111992593(+)$1	236	32	37	14.9999
ggcgg	chr19:2015300-2015564(-)$1	264	89	94	14.9999
GGCGG	chr1:234614073-234614324(-)$1	251	35	40	14.9999
ggcgg	chr16:2059504-2059767(-)$1	263	21	26	14.9999
GGCGG	chr21:46927312-46927579(+)$1	267	76	81	14.9999
ggcgg	chr9:80646041-80646316(-)$1	275	16	21	14.9999
GGCGG	chr15:45003623-45003918(+)$1	295	84	89	14.9999
GGCGG	chr17:79977650-79977888(-)$1	238	67	72	14.9999
GGCGG	chr15:80215200-80215418(-)$1	218	48	53	14.9999
GGCGG	chr9:140323166-140323462(+)$1	296	217	222	14.9999
GGCGG	chr5:177019168-177019435(+)$1	267	238	243	14.9999
ggcgg	chr2:132249717-132249993(-)$1	276	8	13	14.9999
GGCGG	chr3:122785862-122786235(+)$1	373	32	37	14.9999
GGCGG	chr19:39109744-39110034(+)$1	290	1	6	14.9999
GGCGG	chr5:154135239-154135462(+)$1	223	23	28	14.9999
GGCGG	chr11:236933-237215(+)$1	282	268	273	14.9999
GGCGG	chr22:21996524-21996843(+)$1	319	48	53	14.9999
GGCGG	chr1:207494946-207495229(+)$1	283	121	126	14.9999
GGCGG	chr6:166755819-166756061(-)$1	242	63	68	14.9999
GGCGG	chr19:50180426-50180674(+)$1	248	16	21	14.9999
ggcgg	chrX:48814528-48814784(-)$1	256	48	53	14.9999
GGCGG	chr2:178077421-178077628(+)$1	207	8	13	14.9999
GGCGG	chr6:26204808-26205062(+)$1	254	82	87	14.9999
GGCGG	chr19:39340446-39340703(-)$1	257	0	5	14.9999
GGCGG	chr6:26217076-26217328(+)$1	252	147	152	14.9999
GGCGG	chr17:76117678-76117948(-)$1	270	218	223	14.9999
GGCGG	chr15:80215285-80215613(-)$1	328	14	19	14.9999
GGCGG	chr11:208998-209295(+)$1	297	56	61	14.9999
GGCGG	chr1:52195410-52195765(+)$1	355	219	224	14.9999
ggcgg	chr18:51750763-51751016(-)$1	253	14	19	14.9999
GGCGG	chr1:2125400-2125682(-)$1	282	117	122	14.9999
GGCGG	chr2:172379139-172379435(+)$1	296	155	160	14.9999
GGCGG	chr12:110905860-110906138(-)$1	278	107	112	14.9999
GGCGG	chr12:56120884-56121223(-)$1	339	299	304	14.9999
GGCGG	chr11:62599208-62599530(-)$1	322	25	30	14.9999
GGCGG	chr12:56122007-56122239(-)$1	232	116	121	14.9999
GGCGG	chr3:49055838-49056122(-)$1	284	188	193	14.9999
GGCGG	chr19:2199729-2199987(+)$1	258	93	98	14.9999
GGCGG	chr22:32340570-32340859(+)$1	289	51	56	14.9999
GGCGG	chr7:150934503-150934740(+)$1	237	144	149	14.9999
GGCGG	chr8:145149917-145150179(+)$1	262	61	66	14.9999
GGCGG	chr3:33138376-33138676(-)$1	300	14	19	14.9999
GGCGG	chr15:90776968-90777210(-)$1	242	28	33	14.9999
GGCGG	chr6:26104287-26104503(+)$1	216	191	196	14.9999
GGCGG	chr4:152020694-152020933(+)$1	239	112	117	14.9999
GGCGG	chr9:140172989-140173267(+)$1	278	53	58	14.9999
GGCGG	chr13:29233188-29233426(+)$1	238	39	44	14.9999
GGCGG	chr6:27777758-27778009(+)$1	251	129	134	14.9999
GGCGG	chr12:131357028-131357270(+)$1	242	8	13	14.9999
ggcgg	chr7:77166750-77166993(+)$1	243	61	66	14.9999

#otherMatches

#Struct PSSM
ccc]a	chr1:226111687-226111955(-)$1	268	225	230	14.9999
ccc[a	chr7:128502891-128503157(+)$1	266	6	11	14.9999
ffff!	chr17:76182929-76183198(-)$1	269	2	7	14.9999
ccc[f	chr18:51750528-51750846(-)$1	318	82	87	14.9999
]dddd	chr1:156389913-156390216(-)$1	303	123	128	14.9999
c[a!!	chr17:27224484-27224735(-)$1	251	32	37	14.9999
ee22f	chr8:124194893-124195201(+)$1	308	88	93	14.9999
eee22	chr19:18426749-18426976(-)$1	227	200	205	14.9999
FFFFF	chr19:18112127-18112448(+)$1	321	47	52	14.9999
E}BB}	chr10:75541720-75541992(+)$1	272	233	238	14.9999
b[ddd	chr19:18433728-18434003(-)$1	275	129	134	14.9999
GGGGG	chr19:13049356-13049610(+)$1	254	26	31	14.9999
=====	chr16:23607427-23607700(-)$1	273	54	59	14.9999
ddddd	chr1:248020654-248020898(+)$1	244	47	52	14.9999
hhhhh	chr19:1104001-1104224(+)$1	223	167	172	14.9999
fffff	chr9:99180180-99180411(-)$1	231	123	128	14.9999
g::GG	chr1:111992357-111992593(+)$1	236	32	37	14.9999
eeee5	chr19:2015300-2015564(-)$1	264	89	94	14.9999
bb===	chr1:234614073-234614324(-)$1	251	35	40	14.9999
EEEE{	chr16:2059504-2059767(-)$1	263	21	26	14.9999
ccccc	chr21:46927312-46927579(+)$1	267	76	81	14.9999
[bb$$	chr9:80646041-80646316(-)$1	275	16	21	14.9999
Hhhhh	chr15:45003623-45003918(+)$1	295	84	89	14.9999
ddddq	chr17:79977650-79977888(-)$1	238	67	72	14.9999
fffff	chr15:80215200-80215418(-)$1	218	48	53	14.9999
d]a22	chr9:140323166-140323462(+)$1	296	217	222	14.9999
e9999	chr5:177019168-177019435(+)$1	267	238	243	14.9999
{BB::	chr2:132249717-132249993(-)$1	276	8	13	14.9999
D{III	chr3:122785862-122786235(+)$1	373	32	37	14.9999
bb[dd	chr19:39109744-39110034(+)$1	290	1	6	14.9999
iii[a	chr5:154135239-154135462(+)$1	223	23	28	14.9999
IIIYY	chr11:236933-237215(+)$1	282	268	273	14.9999
ddd$$	chr22:21996524-21996843(+)$1	319	48	53	14.9999
EEEEE	chr1:207494946-207495229(+)$1	283	121	126	14.9999
[eeee	chr6:166755819-166756061(-)$1	242	63	68	14.9999
::a[f	chr19:50180426-50180674(+)$1	248	16	21	14.9999
]a]bb	chrX:48814528-48814784(-)$1	256	48	53	14.9999
:ccc!	chr2:178077421-178077628(+)$1	207	8	13	14.9999
DDDDN	chr6:26204808-26205062(+)$1	254	82	87	14.9999
:hhhh	chr19:39340446-39340703(-)$1	257	0	5	14.9999
fffff	chr6:26217076-26217328(+)$1	252	147	152	14.9999
]bb55	chr17:76117678-76117948(-)$1	270	218	223	14.9999
hhhhh	chr15:80215285-80215613(-)$1	328	14	19	14.9999
D{BB{	chr11:208998-209295(+)$1	297	56	61	14.9999
CCCZZ	chr1:52195410-52195765(+)$1	355	219	224	14.9999
JJJJJ	chr18:51750763-51751016(-)$1	253	14	19	14.9999
eeeee	chr1:2125400-2125682(-)$1	282	117	122	14.9999
:dddd	chr2:172379139-172379435(+)$1	296	155	160	14.9999
hhhh]	chr12:110905860-110906138(-)$1	278	107	112	14.9999
DDD}A	chr12:56120884-56121223(-)$1	339	299	304	14.9999
g[eee	chr11:62599208-62599530(-)$1	322	25	30	14.9999
bb!!e	chr12:56122007-56122239(-)$1	232	116	121	14.9999
dd[cc	chr3:49055838-49056122(-)$1	284	188	193	14.9999
2dddd	chr19:2199729-2199987(+)$1	258	93	98	14.9999
{HHHH	chr22:32340570-32340859(+)$1	289	51	56	14.9999
GGGGB	chr7:150934503-150934740(+)$1	237	144	149	14.9999
DD{JJ	chr8:145149917-145150179(+)$1	262	61	66	14.9999
EEEff	chr3:33138376-33138676(-)$1	300	14	19	14.9999
DDD::	chr15:90776968-90777210(-)$1	242	28	33	14.9999
EEEE}	chr6:26104287-26104503(+)$1	216	191	196	14.9999
dddd[	chr4:152020694-152020933(+)$1	239	112	117	14.9999
ppccc	chr9:140172989-140173267(+)$1	278	53	58	14.9999
eeeee	chr13:29233188-29233426(+)$1	238	39	44	14.9999
bb[cc	chr6:27777758-27778009(+)$1	251	129	134	14.9999
DD{DD	chr12:131357028-131357270(+)$1	242	8	13	14.9999
HHHHH	chr7:77166750-77166993(+)$1	243	61	66	14.9999

#DB
))).)	chr1:226111687-226111955(-)$1	1	225	230	14.9999
(((.(	chr7:128502891-128503157(+)$1	1	6	11	14.9999
((((.	chr17:76182929-76183198(-)$1	1	2	7	14.9999
(((.(	chr18:51750528-51750846(-)$1	1	82	87	14.9999
.))))	chr1:156389913-156390216(-)$1	1	123	128	14.9999
(.(..	chr17:27224484-27224735(-)$1	1	32	37	14.9999
))..)	chr8:124194893-124195201(+)$1	1	88	93	14.9999
)))..	chr19:18426749-18426976(-)$1	1	200	205	14.9999
(((((	chr19:18112127-18112448(+)$1	1	47	52	14.9999
).)).	chr10:75541720-75541992(+)$1	1	233	238	14.9999
(.(((	chr19:18433728-18434003(-)$1	1	129	134	14.9999
(((((	chr19:13049356-13049610(+)$1	1	26	31	14.9999
(((((	chr16:23607427-23607700(-)$1	1	54	59	14.9999
(((((	chr1:248020654-248020898(+)$1	1	47	52	14.9999
(((((	chr19:1104001-1104224(+)$1	1	167	172	14.9999
(((((	chr9:99180180-99180411(-)$1	1	123	128	14.9999
)..((	chr1:111992357-111992593(+)$1	1	32	37	14.9999
)))).	chr19:2015300-2015564(-)$1	1	89	94	14.9999
(((((	chr1:234614073-234614324(-)$1	1	35	40	14.9999
((((.	chr16:2059504-2059767(-)$1	1	21	26	14.9999
(((((	chr21:46927312-46927579(+)$1	1	76	81	14.9999
.((..	chr9:80646041-80646316(-)$1	1	16	21	14.9999
(((((	chr15:45003623-45003918(+)$1	1	84	89	14.9999
((((.	chr17:79977650-79977888(-)$1	1	67	72	14.9999
(((((	chr15:80215200-80215418(-)$1	1	48	53	14.9999
).)..	chr9:140323166-140323462(+)$1	1	217	222	14.9999
)....	chr5:177019168-177019435(+)$1	1	238	243	14.9999
.((..	chr2:132249717-132249993(-)$1	1	8	13	14.9999
(.(((	chr3:122785862-122786235(+)$1	1	32	37	14.9999
((.((	chr19:39109744-39110034(+)$1	1	1	6	14.9999
(((.(	chr5:154135239-154135462(+)$1	1	23	28	14.9999
)))..	chr11:236933-237215(+)$1	1	268	273	14.9999
(((..	chr22:21996524-21996843(+)$1	1	48	53	14.9999
)))))	chr1:207494946-207495229(+)$1	1	121	126	14.9999
.((((	chr6:166755819-166756061(-)$1	1	63	68	14.9999
..(.(	chr19:50180426-50180674(+)$1	1	16	21	14.9999
.).))	chrX:48814528-48814784(-)$1	1	48	53	14.9999
.(((.	chr2:178077421-178077628(+)$1	1	8	13	14.9999
((((.	chr6:26204808-26205062(+)$1	1	82	87	14.9999
.((((	chr19:39340446-39340703(-)$1	1	0	5	14.9999
(((((	chr6:26217076-26217328(+)$1	1	147	152	14.9999
.))..	chr17:76117678-76117948(-)$1	1	218	223	14.9999
(((((	chr15:80215285-80215613(-)$1	1	14	19	14.9999
(.((.	chr11:208998-209295(+)$1	1	56	61	14.9999
)))..	chr1:52195410-52195765(+)$1	1	219	224	14.9999
(((((	chr18:51750763-51751016(-)$1	1	14	19	14.9999
)))))	chr1:2125400-2125682(-)$1	1	117	122	14.9999
.((((	chr2:172379139-172379435(+)$1	1	155	160	14.9999
)))).	chr12:110905860-110906138(-)$1	1	107	112	14.9999
))).)	chr12:56120884-56121223(-)$1	1	299	304	14.9999
(.(((	chr11:62599208-62599530(-)$1	1	25	30	14.9999
((..(	chr12:56122007-56122239(-)$1	1	116	121	14.9999
((.((	chr3:49055838-49056122(-)$1	1	188	193	14.9999
.))))	chr19:2199729-2199987(+)$1	1	93	98	14.9999
.((((	chr22:32340570-32340859(+)$1	1	51	56	14.9999
)))))	chr7:150934503-150934740(+)$1	1	144	149	14.9999
((.((	chr8:145149917-145150179(+)$1	1	61	66	14.9999
(((((	chr3:33138376-33138676(-)$1	1	14	19	14.9999
(((..	chr15:90776968-90777210(-)$1	1	28	33	14.9999
)))).	chr6:26104287-26104503(+)$1	1	191	196	14.9999
((((.	chr4:152020694-152020933(+)$1	1	112	117	14.9999
..)))	chr9:140172989-140173267(+)$1	1	53	58	14.9999
)))))	chr13:29233188-29233426(+)$1	1	39	44	14.9999
((.((	chr6:27777758-27778009(+)$1	1	129	134	14.9999
((.((	chr12:131357028-131357270(+)$1	1	8	13	14.9999
(((((	chr7:77166750-77166993(+)$1	1	61	66	14.9999

#PSSM
G : 0.87	g : 0.12	
G : 0.87	g : 0.12	
C : 0.87	c : 0.12	
G : 0.87	g : 0.12	
G : 0.87	g : 0.12	

#score	989.9999999999999
#seq	66
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_UTR_m3_run1.nuc.txt

#NT
CCCUCGUCCUCCC	chr19:13250602-13250867(+)$1	265	117	130	20.3541
UCCUGGGGCUCCC	chr11:1774232-1774531(-)$1	299	103	116	15.9791
gccucggccuccc	chr13:20246394-20246673(+)$1	279	136	149	26.9166
ACCUUGUCCUCCC	chr9:131910686-131910968(+)$1	282	64	77	17.3333
GCCCCUGCCUCUC	chr19:1853969-1854227(-)$1	258	217	230	18.6875
GCCUUGACCUCUC	chr9:123619816-123620041(-)$1	225	154	167	16.3958
ACCCCUGCCUCCU	chr19:39874356-39874623(+)$1	267	113	126	15.8749
GCCUCAGCCUUAC	chr12:54745109-54745420(+)$1	311	153	166	18.7916
gccucagccccag	chr1:201104158-201104452(-)$1	294	137	150	16.0833
accucagccuccc	chr2:99812840-99813089(+)$1	249	174	187	24.2083
GCCUGGGCCGGCC	chr22:39127414-39127677(+)$1	263	121	134	15.0416
GCCUGGGCUUCAC	chr8:144807030-144807312(-)$1	282	2	15	16.2916
CCCUGGGCCUCCC	chr7:5645875-5646133(+)$1	258	184	197	20.7708
GCCUCAGCUUCCU	chr19:3208559-3208774(+)$1	215	149	162	19.7291
gccucagccuccc	chr17:35876970-35877237(-)$1	267	144	157	27.0208
gccucagccuccc	chr12:51324174-51324478(+)$1	304	0	13	27.0208
gccucggccuccc	chr6:150046171-150046431(-)$1	260	67	80	26.9166
gccucagccuccc	chr2:32533311-32533574(+)$1	263	113	126	27.0208
gccuuagccuccu	chr7:65619215-65619435(+)$1	220	59	72	20.4583
GCCGCGGCCACCA	chr19:18977377-18977665(+)$1	288	180	193	14.9375
CCCUCGUCCACCC	chr22:22274881-22275161(-)$1	280	242	255	16.3958
GCUUCAGCCUCCA	chr22:41753641-41753957(+)$1	316	75	88	18.9999
GCCCCCUCCUCCC	chr12:120534715-120534967(-)$1	252	127	140	17.9583
accucagccuccc	chr3:10192585-10192838(+)$1	253	225	238	24.2083
gccucagccuccc	chr19:1461322-1461579(-)$1	257	106	119	27.0208
gccuuggccuccc	chr1:10517339-10517617(-)$1	278	117	130	23.6874
gccucggccuccc	chr14:75202362-75202596(+)$1	234	154	167	26.9166
GCCUCUGCGUCCU	chr19:47113326-47113590(+)$1	264	142	155	18.3750
gccuuggccuccc	chr10:75009597-75009874(-)$1	277	138	151	23.6874
GGCUCUGCCUCUC	chr9:136209277-136209580(-)$1	303	242	255	17.8541
accucugccuccu	chr12:133298046-133298284(+)$1	238	208	221	19.7291
GCCUCUGUCUCUC	chr19:7977622-7977908(+)$1	286	152	165	17.9583
GCCUCAGCUCCCC	chr1:156219992-156220257(-)$1	265	138	151	19.4166
GCGCCCGCCUCCC	chr20:62284637-62284854(-)$1	217	20	33	17.0208
GCCUCUGCGUCCU	chr19:47113240-47113495(+)$1	255	228	241	18.3750
gccucagccucac	chr11:65544193-65544562(-)$1	369	192	205	23.4791
CCCUCGUCCCCCC	chr19:11032559-11032864(+)$1	305	112	125	16.7083
gcuucggccuccc	chr21:34730006-34730285(+)$1	279	74	87	22.6458
UCCUAGGCCCCCC	chr19:40738626-40738880(-)$1	254	87	100	16.2916
aucucagccuccc	chr17:57280685-57280979(+)$1	294	147	160	19.5208
GCUUCCCCCUCCC	chr16:87864104-87864314(-)$1	210	161	174	17.3333
GCCUGAGGCCCCC	chr9:131910184-131910433(+)$1	249	170	183	15.7708
CCCUCAGCCUCUC	chr17:40556182-40556430(-)$1	248	45	58	20.6666
gccucugccucug	chr14:67852290-67852575(+)$1	285	164	177	18.7916
GCCUCACCUUCCC	chr19:19467383-19467707(+)$1	324	165	178	19.3125
GCCCGGCCCUCCC	chr1:15755420-15755758(+)$1	338	26	39	16.1875
gccucagccuccc	chr17:73939922-73940188(-)$1	266	106	119	27.0208

#otherMatches

#Struct PSSM
eeee]bb::::cc	chr3:10192692-10192974(+)$1	282	118	131	24.2083
::::::::::::F	chr19:13250602-13250867(+)$1	265	117	130	20.3541
::::=========	chr11:1774232-1774531(-)$1	299	103	116	15.9791
dddd]dddd::dd	chr13:20246394-20246673(+)$1	279	136	149	26.9166
fffff]a333eee	chr9:131910686-131910968(+)$1	282	64	77	17.3333
iiiiiiieeeee:	chr19:1853969-1854227(-)$1	258	217	230	18.6875
JJ:::::::::::	chr9:123619816-123620041(-)$1	225	154	167	16.3958
3dddd]eeeee::	chr19:39874356-39874623(+)$1	267	113	126	15.8749
::::FFFFFF~~~	chr12:54745109-54745420(+)$1	311	153	166	18.7916
BBKKDDDDLLLCC	chr1:201104158-201104452(-)$1	294	137	150	16.0833
$$ffffffsssss	chr2:99812840-99813089(+)$1	249	174	187	24.2083
FFFFFDDDDdddd	chr22:39127414-39127677(+)$1	263	121	134	15.0416
[ccc!!ggggggg	chr8:144807030-144807312(-)$1	282	2	15	16.2916
:fffffflllfff	chr7:5645875-5646133(+)$1	258	184	197	20.7708
==####bb[dddd	chr19:3208559-3208774(+)$1	215	149	162	19.7291
eeee]bbbbdddd	chr17:35876970-35877237(-)$1	267	144	157	27.0208
::ffffff'''''	chr12:51324174-51324478(+)$1	304	0	13	27.0208
dddd]ddddeeee	chr6:150046171-150046431(-)$1	260	67	80	26.9166
eeeee[=======	chr2:32533311-32533574(+)$1	263	113	126	27.0208
bbmmmmbb22bb]	chr7:65619215-65619435(+)$1	220	59	72	20.4583
ldddddddd7777	chr19:18977377-18977665(+)$1	288	180	193	14.9375
:ddddeeeee"""	chr22:22274881-22275161(-)$1	280	242	255	16.3958
2hhhhhhhh::cc	chr22:41753641-41753957(+)$1	316	75	88	18.9999
fff####bbnnnn	chr12:120534715-120534967(-)$1	252	127	140	17.9583
C}EEEEE::eeee	chr3:10192585-10192838(+)$1	253	225	238	24.2083
bbmmmmbb55555	chr19:1461322-1461579(-)$1	257	106	119	27.0208
dddd####fffff	chr1:10517339-10517617(-)$1	278	117	130	23.6874
eeeee22bb]ggg	chr14:75202362-75202596(+)$1	234	154	167	26.9166
dlllddddbb[dd	chr19:47113326-47113590(+)$1	264	142	155	18.3750
DDDD{CCC:eeee	chr10:75009597-75009874(-)$1	277	138	151	23.6874
eee333bb:dddd	chr9:136209277-136209580(-)$1	303	242	255	17.8541
]ffffff]=====	chr12:133298046-133298284(+)$1	238	208	221	19.7291
cc####ccc''''	chr19:7977622-7977908(+)$1	286	152	165	17.9583
f55555ddddfff	chr1:156219992-156220257(-)$1	265	138	151	19.4166
II{EEEEENNNNN	chr20:62284637-62284854(-)$1	217	20	33	17.0208
dlllddddbb[dd	chr19:47113240-47113495(+)$1	255	228	241	18.3750
EKKBB::::::::	chr11:65544193-65544562(-)$1	369	192	205	23.4791
c::::EEEEEZZZ	chr19:11032559-11032864(+)$1	305	112	125	16.7083
bbmmmmbb:eeee	chr21:34730006-34730285(+)$1	279	74	87	22.6458
====::DDDDJJJ	chr19:40738626-40738880(-)$1	254	87	100	16.2916
hhhhhhhhbbnnn	chr17:57280685-57280979(+)$1	294	147	160	19.5208
____EEEEEZZZB	chr16:87864104-87864314(-)$1	210	161	174	17.3333
eeellleeeee::	chr9:131910184-131910433(+)$1	249	170	183	15.7708
:FFFFFFKKBB{E	chr17:40556182-40556430(-)$1	248	45	58	20.6666
bbmmmmbb99999	chr14:67852290-67852575(+)$1	285	164	177	18.7916
CCC{CCC:ggggg	chr19:19467383-19467707(+)$1	324	165	178	19.3125
eedddd:EEEEE:	chr1:15755420-15755758(+)$1	338	26	39	16.1875
ddffffffbbnnn	chr17:73939922-73940188(-)$1	266	106	119	27.0208

#DB
)))).))....((	chr3:10192692-10192974(+)$1	1	118	131	24.2083
............)	chr19:13250602-13250867(+)$1	1	117	130	20.3541
....(((((((((	chr11:1774232-1774531(-)$1	1	103	116	15.9791
)))).))))..((	chr13:20246394-20246673(+)$1	1	136	149	26.9166
))))).)...)))	chr9:131910686-131910968(+)$1	1	64	77	17.3333
)))))))))))).	chr19:1853969-1854227(-)$1	1	217	230	18.6875
((...........	chr9:123619816-123620041(-)$1	1	154	167	16.3958
.)))).)))))..	chr19:39874356-39874623(+)$1	1	113	126	15.8749
....))))))...	chr12:54745109-54745420(+)$1	1	153	166	18.7916
((..((((...((	chr1:201104158-201104452(-)$1	1	137	150	16.0833
..((((((.....	chr2:99812840-99813089(+)$1	1	174	187	24.2083
(((((((((((((	chr22:39127414-39127677(+)$1	1	121	134	15.0416
.(((..(((((((	chr8:144807030-144807312(-)$1	1	2	15	16.2916
.((((((...)))	chr7:5645875-5646133(+)$1	1	184	197	20.7708
((....((.((((	chr19:3208559-3208774(+)$1	1	149	162	19.7291
)))).))))((((	chr17:35876970-35877237(-)$1	1	144	157	27.0208
..((((((.....	chr12:51324174-51324478(+)$1	1	0	13	27.0208
)))).))))((((	chr6:150046171-150046431(-)$1	1	67	80	26.9166
(((((.(((((((	chr2:32533311-32533574(+)$1	1	113	126	27.0208
((....))..)).	chr7:65619215-65619435(+)$1	1	59	72	20.4583
.))))))))....	chr19:18977377-18977665(+)$1	1	180	193	14.9375
.(((((((((...	chr22:22274881-22275161(-)$1	1	242	255	16.3958
.))))))))..((	chr22:41753641-41753957(+)$1	1	75	88	18.9999
(((....((....	chr12:120534715-120534967(-)$1	1	127	140	17.9583
).)))))..((((	chr3:10192585-10192838(+)$1	1	225	238	24.2083
((....)).....	chr19:1461322-1461579(-)$1	1	106	119	27.0208
((((....(((((	chr1:10517339-10517617(-)$1	1	117	130	23.6874
)))))..)).)))	chr14:75202362-75202596(+)$1	1	154	167	26.9166
(...))))((.((	chr19:47113326-47113590(+)$1	1	142	155	18.3750
((((.(((.((((	chr10:75009597-75009874(-)$1	1	138	151	23.6874
)))...)).((((	chr9:136209277-136209580(-)$1	1	242	255	17.8541
.)))))).)))))	chr12:133298046-133298284(+)$1	1	208	221	19.7291
((....(((....	chr19:7977622-7977908(+)$1	1	152	165	17.9583
).....)))))))	chr1:156219992-156220257(-)$1	1	138	151	19.4166
((.(((((.....	chr20:62284637-62284854(-)$1	1	20	33	17.0208
(...))))((.((	chr19:47113240-47113495(+)$1	1	228	241	18.3750
(..((........	chr11:65544193-65544562(-)$1	1	192	205	23.4791
)....)))))...	chr19:11032559-11032864(+)$1	1	112	125	16.7083
((....)).((((	chr21:34730006-34730285(+)$1	1	74	87	22.6458
))))..)))))))	chr19:40738626-40738880(-)$1	1	87	100	16.2916
((((((((((...	chr17:57280685-57280979(+)$1	1	147	160	19.5208
....)))))...)	chr16:87864104-87864314(-)$1	1	161	174	17.3333
(((...)))))..	chr9:131910184-131910433(+)$1	1	170	183	15.7708
.((((((..((.(	chr17:40556182-40556430(-)$1	1	45	58	20.6666
((....)).....	chr14:67852290-67852575(+)$1	1	164	177	18.7916
(((.(((.(((((	chr19:19467383-19467707(+)$1	1	165	178	19.3125
)))))).(((((.	chr1:15755420-15755758(+)$1	1	26	39	16.1875
))((((((((...	chr17:73939922-73940188(-)$1	1	106	119	27.0208

#PSSM
G : 0.39	g : 0.31	a : 0.10	C : 0.10	U : 0.04	A : 0.04	
C : 0.56	c : 0.39	G : 0.02	u : 0.02	
C : 0.52	c : 0.39	U : 0.04	G : 0.02	u : 0.02	
U : 0.45	u : 0.41	C : 0.10	G : 0.02	
C : 0.39	c : 0.35	G : 0.12	u : 0.06	U : 0.04	A : 0.02	
a : 0.25	G : 0.25	A : 0.14	g : 0.12	U : 0.12	C : 0.06	u : 0.04	
g : 0.41	G : 0.39	U : 0.10	C : 0.06	A : 0.02	
C : 0.52	c : 0.41	G : 0.04	U : 0.02	
C : 0.45	c : 0.41	U : 0.08	G : 0.04	
U : 0.43	u : 0.39	C : 0.08	A : 0.04	c : 0.02	G : 0.02	
C : 0.54	c : 0.41	U : 0.02	G : 0.02	
C : 0.43	c : 0.35	U : 0.10	A : 0.04	a : 0.04	u : 0.02	
C : 0.45	c : 0.33	U : 0.08	g : 0.04	u : 0.04	A : 0.04	

#score	971.3749999999999
#seq	48
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_transcript_m3_run1.nuc.txt

#NT
CCUCC	chr19:14041302-14041574(+)$1	272	55	60	15.0000
CCUCC	chr9:117062817-117063067(+)$1	250	77	82	15.0000
CCUCC	chr9:117027614-117027839(+)$1	225	125	130	15.0000
CCUCC	chr22:37886474-37886720(-)$1	246	195	200	15.0000
CCUCC	chr19:44236909-44237236(-)$1	327	60	65	15.0000
CCUCC	chr14:105239287-105239530(-)$1	243	37	42	15.0000
CCUCC	chr9:139752092-139752340(+)$1	248	11	16	15.0000
CCUCC	chr17:79966811-79967030(+)$1	219	94	99	15.0000
CCUCC	chr12:50523918-50524210(-)$1	292	58	63	15.0000
CCUCC	chr17:73620815-73621097(+)$1	282	194	199	15.0000
CCUCC	chr17:73826416-73826650(-)$1	234	0	5	15.0000
CCUCC	chr2:241818057-241818358(+)$1	301	267	272	15.0000
CCUCC	chr5:73923328-73923588(-)$1	260	87	92	15.0000
CCUCC	chr2:27668090-27668410(-)$1	320	19	24	15.0000
CCUCC	chr19:1227753-1228040(+)$1	287	7	12	15.0000
CCUCC	chr9:117062804-117063017(+)$1	213	90	95	15.0000
CCUCC	chr17:80899195-80899462(+)$1	267	14	19	15.0000
CCUCC	chr19:46274747-46275021(-)$1	274	87	92	15.0000
CCUCC	chr16:1815882-1816244(+)$1	362	98	103	15.0000
CCUCC	chr6:109765376-109765642(-)$1	266	45	50	15.0000
CCUCC	chr20:39801959-39802182(+)$1	223	8	13	15.0000
CCUCC	chr1:156351786-156352066(+)$1	280	65	70	15.0000
CCUCC	chr1:156219552-156219821(-)$1	269	60	65	15.0000
CCUCC	chr9:117052239-117052449(+)$1	210	26	31	15.0000
CCUCC	chr10:5979140-5979503(+)$1	363	14	19	15.0000
CCUCC	chr10:101603978-101604193(+)$1	215	124	129	15.0000
CCUCC	chr20:60888403-60888616(-)$1	213	103	108	15.0000
CCUCC	chr21:46925083-46925291(+)$1	208	51	56	15.0000
CCUCC	chr14:74430291-74430583(-)$1	292	168	173	15.0000
CCUCC	chr16:2580125-2580405(+)$1	280	4	9	15.0000
CCUCC	chr7:150035983-150036267(-)$1	284	46	51	15.0000
CCUCC	chr19:55602377-55602689(-)$1	312	199	204	15.0000
CCUCC	chr17:79974629-79974853(+)$1	224	6	11	15.0000
CCUCC	chr9:117072733-117072994(+)$1	261	178	183	15.0000
CCUCC	chr10:101603993-101604215(+)$1	222	109	114	15.0000
CCUCC	chr8:145152040-145152286(+)$1	246	56	61	15.0000
CCUCC	chr20:61919850-61920130(+)$1	280	21	26	15.0000
CCUCC	chr6:30891028-30891287(+)$1	259	108	113	15.0000
CCUCC	chr9:116997787-116998009(+)$1	222	55	60	15.0000
CCUCC	chr11:47199821-47200093(-)$1	272	41	46	15.0000
CCUCC	chr7:73010958-73011178(-)$1	220	128	133	15.0000
CCUCC	chr11:72539304-72539597(+)$1	293	143	148	15.0000
CCUCC	chr19:34890874-34891138(+)$1	264	85	90	15.0000
CCUCC	chr17:42397351-42397581(-)$1	230	80	85	15.0000
CCUCC	chr17:4447780-4448041(-)$1	261	28	33	15.0000
CCUCC	chr16:89977386-89977592(+)$1	206	28	33	15.0000
CCUCC	chr19:39406805-39407053(-)$1	248	51	56	15.0000
CCUCC	chr17:79864634-79864876(-)$1	242	65	70	15.0000
CCUCC	chr3:9956289-9956555(+)$1	266	116	121	15.0000
CCUCC	chr1:1228914-1229182(-)$1	268	14	19	15.0000
CCUCC	chr16:1813558-1813798(+)$1	240	6	11	15.0000
CCUCC	chr4:1219080-1219405(-)$1	325	288	293	15.0000
CCUCC	chr17:79967281-79967513(+)$1	232	66	71	15.0000
CCUCC	chr16:571722-571993(+)$1	271	10	15	15.0000
CCUCC	chr4:1808768-1809009(+)$1	241	60	65	15.0000
CCUCC	chr19:35770385-35770663(+)$1	278	90	95	15.0000

#otherMatches

#Struct PSSM
bb[cc	chr20:2845993-2846250(+)$1	257	27	32	15.0000
ddnnn	chr19:14041302-14041574(+)$1	272	55	60	15.0000
fffff	chr9:117062817-117063067(+)$1	250	77	82	15.0000
fff33	chr9:117027614-117027839(+)$1	225	125	130	15.0000
ggggg	chr22:37886474-37886720(-)$1	246	195	200	15.0000
^^^^^	chr19:44236909-44237236(-)$1	327	60	65	15.0000
EEEEE	chr14:105239287-105239530(-)$1	243	37	42	15.0000
BB{DD	chr9:139752092-139752340(+)$1	248	11	16	15.0000
%%%%d	chr17:79966811-79967030(+)$1	219	94	99	15.0000
4444c	chr12:50523918-50524210(-)$1	292	58	63	15.0000
ddd[h	chr17:73620815-73621097(+)$1	282	194	199	15.0000
EEEEE	chr17:73826416-73826650(-)$1	234	0	5	15.0000
eee]d	chr2:241818057-241818358(+)$1	301	267	272	15.0000
ff:cc	chr5:73923328-73923588(-)$1	260	87	92	15.0000
eeee:	chr2:27668090-27668410(-)$1	320	19	24	15.0000
fffff	chr19:1227753-1228040(+)$1	287	7	12	15.0000
G{CCC	chr9:117062804-117063017(+)$1	213	90	95	15.0000
hhhh[	chr17:80899195-80899462(+)$1	267	14	19	15.0000
dddd[	chr19:46274747-46275021(-)$1	274	87	92	15.0000
cc!!f	chr16:1815882-1816244(+)$1	362	98	103	15.0000
EEDDD	chr6:109765376-109765642(-)$1	266	45	50	15.0000
HHHHK	chr20:39801959-39802182(+)$1	223	8	13	15.0000
2dddd	chr1:156351786-156352066(+)$1	280	65	70	15.0000
ccc22	chr1:156219552-156219821(-)$1	269	60	65	15.0000
WBBDD	chr9:117052239-117052449(+)$1	210	26	31	15.0000
bbnnn	chr10:5979140-5979503(+)$1	363	14	19	15.0000
cccc]	chr10:101603978-101604193(+)$1	215	124	129	15.0000
hhhhh	chr20:60888403-60888616(-)$1	213	103	108	15.0000
ennnn	chr21:46925083-46925291(+)$1	208	51	56	15.0000
:::::	chr14:74430291-74430583(-)$1	292	168	173	15.0000
::fff	chr16:2580125-2580405(+)$1	280	4	9	15.0000
CCCLL	chr7:150035983-150036267(-)$1	284	46	51	15.0000
EEEEY	chr19:55602377-55602689(-)$1	312	199	204	15.0000
F::::	chr17:79974629-79974853(+)$1	224	6	11	15.0000
a[eee	chr9:117072733-117072994(+)$1	261	178	183	15.0000
cccc]	chr10:101603993-101604215(+)$1	222	109	114	15.0000
ccc]d	chr8:145152040-145152286(+)$1	246	56	61	15.0000
GGGGK	chr20:61919850-61920130(+)$1	280	21	26	15.0000
d]ddd	chr6:30891028-30891287(+)$1	259	108	113	15.0000
[dddd	chr9:116997787-116998009(+)$1	222	55	60	15.0000
cccdd	chr11:47199821-47200093(-)$1	272	41	46	15.0000
ppppp	chr7:73010958-73011178(-)$1	220	128	133	15.0000
ooocc	chr11:72539304-72539597(+)$1	293	143	148	15.0000
00000	chr19:34890874-34891138(+)$1	264	85	90	15.0000
fff[a	chr17:42397351-42397581(-)$1	230	80	85	15.0000
yyyyy	chr17:4447780-4448041(-)$1	261	28	33	15.0000
KEEEE	chr16:89977386-89977592(+)$1	206	28	33	15.0000
JA{FF	chr19:39406805-39407053(-)$1	248	51	56	15.0000
F:ccc	chr17:79864634-79864876(-)$1	242	65	70	15.0000
d!!a!	chr3:9956289-9956555(+)$1	266	116	121	15.0000
F{CCC	chr1:1228914-1229182(-)$1	268	14	19	15.0000
HHHff	chr16:1813558-1813798(+)$1	240	6	11	15.0000
}EEEE	chr4:1219080-1219405(-)$1	325	288	293	15.0000
:IIII	chr17:79967281-79967513(+)$1	232	66	71	15.0000
eeenn	chr16:571722-571993(+)$1	271	10	15	15.0000
eeeea	chr4:1808768-1809009(+)$1	241	60	65	15.0000
b[eee	chr19:35770385-35770663(+)$1	278	90	95	15.0000

#DB
((.((	chr20:2845993-2846250(+)$1	1	27	32	15.0000
((...	chr19:14041302-14041574(+)$1	1	55	60	15.0000
(((((	chr9:117062817-117063067(+)$1	1	77	82	15.0000
)))..	chr9:117027614-117027839(+)$1	1	125	130	15.0000
(((((	chr22:37886474-37886720(-)$1	1	195	200	15.0000
.....	chr19:44236909-44237236(-)$1	1	60	65	15.0000
(((((	chr14:105239287-105239530(-)$1	1	37	42	15.0000
((.((	chr9:139752092-139752340(+)$1	1	11	16	15.0000
....(	chr17:79966811-79967030(+)$1	1	94	99	15.0000
....)	chr12:50523918-50524210(-)$1	1	58	63	15.0000
(((.(	chr17:73620815-73621097(+)$1	1	194	199	15.0000
(((((	chr17:73826416-73826650(-)$1	1	0	5	15.0000
))).)	chr2:241818057-241818358(+)$1	1	267	272	15.0000
)).((	chr5:73923328-73923588(-)$1	1	87	92	15.0000
)))).	chr2:27668090-27668410(-)$1	1	19	24	15.0000
(((((	chr19:1227753-1228040(+)$1	1	7	12	15.0000
(.(((	chr9:117062804-117063017(+)$1	1	90	95	15.0000
((((.	chr17:80899195-80899462(+)$1	1	14	19	15.0000
((((.	chr19:46274747-46275021(-)$1	1	87	92	15.0000
((..(	chr16:1815882-1816244(+)$1	1	98	103	15.0000
(((((	chr6:109765376-109765642(-)$1	1	45	50	15.0000
((((.	chr20:39801959-39802182(+)$1	1	8	13	15.0000
.))))	chr1:156351786-156352066(+)$1	1	65	70	15.0000
)))..	chr1:156219552-156219821(-)$1	1	60	65	15.0000
.((((	chr9:117052239-117052449(+)$1	1	26	31	15.0000
((...	chr10:5979140-5979503(+)$1	1	14	19	15.0000
)))).	chr10:101603978-101604193(+)$1	1	124	129	15.0000
)))))	chr20:60888403-60888616(-)$1	1	103	108	15.0000
(....	chr21:46925083-46925291(+)$1	1	51	56	15.0000
.....	chr14:74430291-74430583(-)$1	1	168	173	15.0000
..(((	chr16:2580125-2580405(+)$1	1	4	9	15.0000
(((..	chr7:150035983-150036267(-)$1	1	46	51	15.0000
)))).	chr19:55602377-55602689(-)$1	1	199	204	15.0000
(....	chr17:79974629-79974853(+)$1	1	6	11	15.0000
(.(((	chr9:117072733-117072994(+)$1	1	178	183	15.0000
)))).	chr10:101603993-101604215(+)$1	1	109	114	15.0000
))).)	chr8:145152040-145152286(+)$1	1	56	61	15.0000
((((.	chr20:61919850-61920130(+)$1	1	21	26	15.0000
).)))	chr6:30891028-30891287(+)$1	1	108	113	15.0000
.((((	chr9:116997787-116998009(+)$1	1	55	60	15.0000
(((((	chr11:47199821-47200093(-)$1	1	41	46	15.0000
.....	chr7:73010958-73011178(-)$1	1	128	133	15.0000
...))	chr11:72539304-72539597(+)$1	1	143	148	15.0000
.....	chr19:34890874-34891138(+)$1	1	85	90	15.0000
(((.(	chr17:42397351-42397581(-)$1	1	80	85	15.0000
.....	chr17:4447780-4448041(-)$1	1	28	33	15.0000
.((((	chr16:89977386-89977592(+)$1	1	28	33	15.0000
((.((	chr19:39406805-39407053(-)$1	1	51	56	15.0000
(.(((	chr17:79864634-79864876(-)$1	1	65	70	15.0000
(..(.	chr3:9956289-9956555(+)$1	1	116	121	15.0000
(.(((	chr1:1228914-1229182(-)$1	1	14	19	15.0000
(((((	chr16:1813558-1813798(+)$1	1	6	11	15.0000
.))))	chr4:1219080-1219405(-)$1	1	288	293	15.0000
.))))	chr17:79967281-79967513(+)$1	1	66	71	15.0000
(((..	chr16:571722-571993(+)$1	1	10	15	15.0000
)))))	chr4:1808768-1809009(+)$1	1	60	65	15.0000
(.(((	chr19:35770385-35770663(+)$1	1	90	95	15.0000

#PSSM
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	

#score	855.0000000000005
#seq	57
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_transcript_m2_run1.nuc.txt

#NT
CUUCCUU	chr17:52985311-52985600(+)$1	289	94	101	17.8749
CUUUCUU	chr16:11951371-11951759(+)$1	388	90	97	14.6607
cuuccuu	chr10:113953041-113953333(-)$1	292	157	164	17.8749
cuuucuu	chr2:135682333-135682639(+)$1	306	6	13	14.6607
cuuccuu	chr10:80904667-80904982(+)$1	315	100	107	17.8749
CUUCCUC	chr6:1720373-1720600(-)$1	227	196	203	14.1249
CUUCCUU	chr11:8634535-8634840(-)$1	305	192	199	17.8749
cuuacuu	chr2:20485634-20485925(-)$1	291	158	165	14.3928
cUUCCCU	chr7:111085574-111085872(-)$1	298	121	128	14.1249
cuuccuu	chr2:20919660-20919964(-)$1	304	44	51	17.8749
cuuccuc	chrX:108897792-108898092(-)$1	300	224	231	14.1249
CUUCCUU	chr1:227154924-227155192(+)$1	268	124	131	17.8749
CUUCCUU	chr2:242229136-242229361(-)$1	225	212	219	17.8749
cuuccuu	chr2:164556391-164556691(-)$1	300	119	126	17.8749
CUUCCUU	chr15:67397201-67397498(+)$1	297	129	136	17.8749
CUUGCUU	chr3:171936721-171937004(+)$1	283	39	46	14.2142
cuuccuc	chr3:157940669-157941028(+)$1	359	273	280	14.1249
cuuucuu	chr4:68519528-68519813(-)$1	285	166	173	14.6607
CUUCCUU	chr19:54643922-54644152(+)$1	230	210	217	17.8749
CUUCCCU	chr16:46924228-46924498(+)$1	270	84	91	14.1249
CUUCCUU	chr9:127460550-127460811(-)$1	261	154	161	17.8749
cuuccuu	chr7:7241675-7241938(+)$1	263	176	183	17.8749
cuucuuu	chr4:9974756-9975064(-)$1	308	67	74	14.3035
cuucuuu	chr1:212936066-212936314(-)$1	248	66	73	14.3035
cuugcuu	chr14:39833029-39833302(+)$1	273	1	8	14.2142
CUUCCUU	chr18:74141305-74141578(-)$1	273	92	99	17.8749
cuucuuu	chr4:17956313-17956543(-)$1	230	140	147	14.3035
cuucuuu	chr14:90056900-90057133(-)$1	233	75	82	14.3035
CUUCCCU	chr2:174966899-174967158(-)$1	259	54	61	14.1249
CUUCCUC	chr17:76819461-76819713(-)$1	252	194	201	14.1249
CUUACUU	chr6:35846009-35846288(-)$1	279	168	175	14.3928
cuuccuc	chr20:30988202-30988537(+)$1	335	59	66	14.1249
cuuucuu	chr2:11419618-11419895(-)$1	277	208	215	14.6607
CUUCCCU	chr17:55344306-55344603(+)$1	297	133	140	14.1249
CUUCCUC	chr1:93598178-93598479(+)$1	301	44	51	14.1249
cuuccuu	chr7:4123215-4123465(+)$1	250	53	60	17.8749
cuuccuu	chr15:85587805-85588049(+)$1	244	162	169	17.8749
CUUCCUU	chr2:179983737-179984008(-)$1	271	131	138	17.8749
CUUCCUU	chr19:54377741-54377976(+)$1	235	192	199	17.8749
cuuacuu	chr14:31037394-31037639(+)$1	245	45	52	14.3928
cuuucuu	chr11:129691568-129691798(+)$1	230	35	42	14.6607
cuuccuu	chr2:201178270-201178543(+)$1	273	200	207	17.8749
cuuucuu	chr16:47625327-47625657(+)$1	330	95	102	14.6607
cuucuuu	chr10:88536518-88536751(+)$1	233	17	24	14.3035
CUUCCUU	chr20:10448835-10449087(+)$1	252	204	211	17.8749
CUUCUUU	chr6:4782185-4782447(+)$1	262	28	35	14.3035
cuuacuu	chr10:135225358-135225622(+)$1	264	249	256	14.3928
cuucuuu	chr20:36709602-36709863(+)$1	261	34	41	14.3035
cuucccu	chr7:137659272-137659500(-)$1	228	45	52	14.1249
cuucuuu	chr2:242183799-242184065(-)$1	266	7	14	14.3035
cuucccu	chr4:79110637-79110894(+)$1	257	196	203	14.1249
cuuccuu	chr2:11735870-11736176(+)$1	306	142	149	17.8749
cuuccuu	chr4:186683368-186683637(-)$1	269	69	76	17.8749
CUUUCUU	chr18:57001617-57001899(-)$1	282	229	236	14.6607
cuucccu	chr2:223804120-223804366(+)$1	246	224	231	14.1249

#otherMatches

#Struct PSSM
:::::::	chr17:28728303-28728616(+)$1	313	22	29	14.1249
22ccc]b	chr17:52985311-52985600(+)$1	289	94	101	17.8749
cc:::::	chr16:11951371-11951759(+)$1	388	90	97	14.6607
====lll	chr10:113953041-113953333(-)$1	292	157	164	17.8749
:::CCCK	chr2:135682333-135682639(+)$1	306	6	13	14.6607
:::::::	chr10:80904667-80904982(+)$1	315	100	107	17.8749
ffffwww	chr6:1720373-1720600(-)$1	227	196	203	14.1249
ee]ccc]	chr11:8634535-8634840(-)$1	305	192	199	17.8749
:::::::	chr2:20485634-20485925(-)$1	291	158	165	14.3928
::::::J	chr7:111085574-111085872(-)$1	298	121	128	14.1249
MMEEEEE	chr2:20919660-20919964(-)$1	304	44	51	17.8749
ddnnnnn	chrX:108897792-108898092(-)$1	300	224	231	14.1249
(((((((	chr1:227154924-227155192(+)$1	268	124	131	17.8749
d::::::	chr2:242229136-242229361(-)$1	225	212	219	17.8749
^^^^^^^	chr2:164556391-164556691(-)$1	300	119	126	17.8749
qqqqqqq	chr15:67397201-67397498(+)$1	297	129	136	17.8749
:hhhhhh	chr3:171936721-171937004(+)$1	283	39	46	14.2142
>>>>>>>	chr3:157940669-157941028(+)$1	359	273	280	14.1249
"""bbqq	chr4:68519528-68519813(-)$1	285	166	173	14.6607
""ddddl	chr19:54643922-54644152(+)$1	230	210	217	17.8749
==[ccc[	chr16:46924228-46924498(+)$1	270	84	91	14.1249
:::::GG	chr9:127460550-127460811(-)$1	261	154	161	17.8749
eehhhhh	chr7:7241675-7241938(+)$1	263	176	183	17.8749
EEEEEKK	chr4:9974756-9975064(-)$1	308	67	74	14.3035
33dddd7	chr1:212936066-212936314(-)$1	248	66	73	14.3035
:::::::	chr14:39833029-39833302(+)$1	273	1	8	14.2142
FFFF}CC	chr18:74141305-74141578(-)$1	273	92	99	17.8749
goooooo	chr4:17956313-17956543(-)$1	230	140	147	14.3035
ffffddd	chr14:90056900-90057133(-)$1	233	75	82	14.3035
e777777	chr2:174966899-174967158(-)$1	259	54	61	14.1249
fffff]a	chr17:76819461-76819713(-)$1	252	194	201	14.1249
FFLLLEE	chr6:35846009-35846288(-)$1	279	168	175	14.3928
D:::ddd	chr20:30988202-30988537(+)$1	335	59	66	14.1249
D::::::	chr2:11419618-11419895(-)$1	277	208	215	14.6607
GGGGJJJ	chr17:55344306-55344603(+)$1	297	133	140	14.1249
^^^^^^^	chr1:93598178-93598479(+)$1	301	44	51	14.1249
:::::::	chr7:4123215-4123465(+)$1	250	53	60	17.8749
8888888	chr15:85587805-85588049(+)$1	244	162	169	17.8749
ee[bb[b	chr2:179983737-179984008(-)$1	271	131	138	17.8749
^^^^^^^	chr19:54377741-54377976(+)$1	235	192	199	17.8749
FFfffff	chr14:31037394-31037639(+)$1	245	45	52	14.3928
:::::::	chr11:129691568-129691798(+)$1	230	35	42	14.6607
777777f	chr2:201178270-201178543(+)$1	273	200	207	17.8749
:::::::	chr16:47625327-47625657(+)$1	330	95	102	14.6607
uuuuuuu	chr10:88536518-88536751(+)$1	233	17	24	14.3035
iiiaddd	chr20:10448835-10449087(+)$1	252	204	211	17.8749
JJJJJJJ	chr6:4782185-4782447(+)$1	262	28	35	14.3035
DYYEEEE	chr10:135225358-135225622(+)$1	264	249	256	14.3928
LLLDDDD	chr20:36709602-36709863(+)$1	261	34	41	14.3035
:::::::	chr7:137659272-137659500(-)$1	228	45	52	14.1249
:::::::	chr2:242183799-242184065(-)$1	266	7	14	14.3035
cccbb[c	chr4:79110637-79110894(+)$1	257	196	203	14.1249
44dddd3	chr2:11735870-11736176(+)$1	306	142	149	17.8749
GGG::gg	chr4:186683368-186683637(-)$1	269	69	76	17.8749
qqqqqqq	chr18:57001617-57001899(-)$1	282	229	236	14.6607
nnfffff	chr2:223804120-223804366(+)$1	246	224	231	14.1249

#DB
.......	chr17:28728303-28728616(+)$1	1	22	29	14.1249
..))).)	chr17:52985311-52985600(+)$1	1	94	101	17.8749
)).....	chr16:11951371-11951759(+)$1	1	90	97	14.6607
((((...	chr10:113953041-113953333(-)$1	1	157	164	17.8749
...(((.	chr2:135682333-135682639(+)$1	1	6	13	14.6607
.......	chr10:80904667-80904982(+)$1	1	100	107	17.8749
((((...	chr6:1720373-1720600(-)$1	1	196	203	14.1249
)).))).	chr11:8634535-8634840(-)$1	1	192	199	17.8749
.......	chr2:20485634-20485925(-)$1	1	158	165	14.3928
......(	chr7:111085574-111085872(-)$1	1	121	128	14.1249
..(((((	chr2:20919660-20919964(-)$1	1	44	51	17.8749
((.....	chrX:108897792-108898092(-)$1	1	224	231	14.1249
.......	chr1:227154924-227155192(+)$1	1	124	131	17.8749
)......	chr2:242229136-242229361(-)$1	1	212	219	17.8749
.......	chr2:164556391-164556691(-)$1	1	119	126	17.8749
.......	chr15:67397201-67397498(+)$1	1	129	136	17.8749
.((((((	chr3:171936721-171937004(+)$1	1	39	46	14.2142
.......	chr3:157940669-157941028(+)$1	1	273	280	14.1249
...((..	chr4:68519528-68519813(-)$1	1	166	173	14.6607
..((((.	chr19:54643922-54644152(+)$1	1	210	217	17.8749
((.(((.	chr16:46924228-46924498(+)$1	1	84	91	14.1249
.....))	chr9:127460550-127460811(-)$1	1	154	161	17.8749
)))))))	chr7:7241675-7241938(+)$1	1	176	183	17.8749
(((((..	chr4:9974756-9975064(-)$1	1	67	74	14.3035
..)))).	chr1:212936066-212936314(-)$1	1	66	73	14.3035
.......	chr14:39833029-39833302(+)$1	1	1	8	14.2142
)))).))	chr18:74141305-74141578(-)$1	1	92	99	17.8749
(......	chr4:17956313-17956543(-)$1	1	140	147	14.3035
(((((((	chr14:90056900-90057133(-)$1	1	75	82	14.3035
)......	chr2:174966899-174967158(-)$1	1	54	61	14.1249
))))).)	chr17:76819461-76819713(-)$1	1	194	201	14.1249
((...((	chr6:35846009-35846288(-)$1	1	168	175	14.3928
(...(((	chr20:30988202-30988537(+)$1	1	59	66	14.1249
)......	chr2:11419618-11419895(-)$1	1	208	215	14.6607
))))(((	chr17:55344306-55344603(+)$1	1	133	140	14.1249
.......	chr1:93598178-93598479(+)$1	1	44	51	14.1249
.......	chr7:4123215-4123465(+)$1	1	53	60	17.8749
.......	chr15:85587805-85588049(+)$1	1	162	169	17.8749
((.((.(	chr2:179983737-179984008(-)$1	1	131	138	17.8749
.......	chr19:54377741-54377976(+)$1	1	192	199	17.8749
(((((((	chr14:31037394-31037639(+)$1	1	45	52	14.3928
.......	chr11:129691568-129691798(+)$1	1	35	42	14.6607
......)	chr2:201178270-201178543(+)$1	1	200	207	17.8749
.......	chr16:47625327-47625657(+)$1	1	95	102	14.6607
.......	chr10:88536518-88536751(+)$1	1	17	24	14.3035
)))))))	chr20:10448835-10449087(+)$1	1	204	211	17.8749
(((((((	chr6:4782185-4782447(+)$1	1	28	35	14.3035
)..))))	chr10:135225358-135225622(+)$1	1	249	256	14.3928
...((((	chr20:36709602-36709863(+)$1	1	34	41	14.3035
.......	chr7:137659272-137659500(-)$1	1	45	52	14.1249
.......	chr2:242183799-242184065(-)$1	1	7	14	14.3035
(((((.(	chr4:79110637-79110894(+)$1	1	196	203	14.1249
..)))).	chr2:11735870-11736176(+)$1	1	142	149	17.8749
(((..((	chr4:186683368-186683637(-)$1	1	69	76	17.8749
.......	chr18:57001617-57001899(-)$1	1	229	236	14.6607
..)))))	chr2:223804120-223804366(+)$1	1	224	231	14.1249

#PSSM
c : 0.60	C : 0.39	
u : 0.58	U : 0.41	
u : 0.58	U : 0.41	
c : 0.42	C : 0.33	u : 0.08	a : 0.05	U : 0.03	G : 0.01	g : 0.01	A : 0.01	
c : 0.46	C : 0.39	u : 0.12	U : 0.01	
u : 0.53	U : 0.33	C : 0.07	c : 0.05	
u : 0.51	U : 0.35	c : 0.07	C : 0.05	

#score	876.1785714285717
#seq	56
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800XSC_GNL3_transcript_m2_run2.nuc.txt

#NT
AUG	chr14:32954185-32954427(+)$1	242	40	43	8.9999
AUG	chr4:83816904-83817169(-)$1	265	23	26	8.9999
AUG	chr6:27860378-27860619(-)$1	241	101	104	8.9999
AUG	chrM:9852-10078(+)$1	226	91	94	8.9999
aug	chr3:193373466-193373676(+)$1	210	4	7	8.9999
AUG	chr7:103029306-103029512(-)$1	206	0	3	8.9999
AUG	chr12:48416393-48416608(+)$1	215	186	189	8.9999
AUG	chr6:27792114-27792355(+)$1	241	40	43	8.9999
AUG	chrM:516-721(+)$1	205	66	69	8.9999
AUG	chr9:139565014-139565228(+)$1	214	107	110	8.9999
AUG	chrM:12176-12400(+)$1	224	58	61	8.9999
AUG	chr12:48416389-48416593(+)$1	204	190	193	8.9999
AUG	chr12:69236346-69236554(-)$1	208	104	107	8.9999
AUG	chr1:173835354-173835573(-)$1	219	8	11	8.9999
AUG	chr13:92003225-92003447(+)$1	222	13	16	8.9999
aug	chr3:193373476-193373688(+)$1	212	12	15	8.9999
AUG	chr1:173835344-173835554(-)$1	210	36	39	8.9999
AUG	chr9:139565003-139565214(+)$1	211	118	121	8.9999
AUG	chr15:74222561-74222772(+)$1	211	54	57	8.9999
aug	chr19:893479-893691(+)$1	212	59	62	8.9999
aug	chr11:106689567-106689780(-)$1	213	62	65	8.9999
AUG	chr15:74222553-74222761(+)$1	208	62	65	8.9999
AUG	chrM:4347-4557(+)$1	210	97	100	8.9999
aug	chr11:106689580-106689788(-)$1	208	70	73	8.9999
aug	chr14:102706557-102706760(-)$1	203	99	102	8.9999
AUG	chrM:488-713(+)$1	225	94	97	8.9999
aug	chrM:4324-4547(+)$1	223	13	16	8.9999
AUG	chr7:103029312-103029525(-)$1	213	13	16	8.9999
AUG	chrM:4193-4430(+)$1	237	19	22	8.9999
AUG	chr13:92003090-92003315(+)$1	225	95	98	8.9999

#otherMatches

#Struct PSSM
HDD	chr6:31958179-31958384(+)$1	205	7	10	8.9999
ee[	chr14:32954185-32954427(+)$1	242	40	43	8.9999
JJJ	chr4:83816904-83817169(-)$1	265	23	26	8.9999
:dd	chr6:27860378-27860619(-)$1	241	101	104	8.9999
d[e	chrM:9852-10078(+)$1	226	91	94	8.9999
:::	chr3:193373466-193373676(+)$1	210	4	7	8.9999
::D	chr7:103029306-103029512(-)$1	206	0	3	8.9999
ZZC	chr12:48416393-48416608(+)$1	215	186	189	8.9999
!!b	chr6:27792114-27792355(+)$1	241	40	43	8.9999
cc"	chrM:516-721(+)$1	205	66	69	8.9999
===	chr9:139565014-139565228(+)$1	214	107	110	8.9999
qqb	chrM:12176-12400(+)$1	224	58	61	8.9999
dd:	chr12:48416389-48416593(+)$1	204	190	193	8.9999
lll	chr12:69236346-69236554(-)$1	208	104	107	8.9999
fff	chr1:173835354-173835573(-)$1	219	8	11	8.9999
fff	chr13:92003225-92003447(+)$1	222	13	16	8.9999
d[b	chr3:193373476-193373688(+)$1	212	12	15	8.9999
OOG	chr1:173835344-173835554(-)$1	210	36	39	8.9999
===	chr9:139565003-139565214(+)$1	211	118	121	8.9999
hhh	chr15:74222561-74222772(+)$1	211	54	57	8.9999
:::	chr19:893479-893691(+)$1	212	59	62	8.9999
:cc	chr11:106689567-106689780(-)$1	213	62	65	8.9999
hhh	chr15:74222553-74222761(+)$1	208	62	65	8.9999
::h	chrM:4347-4557(+)$1	210	97	100	8.9999
:cc	chr11:106689580-106689788(-)$1	208	70	73	8.9999
""c	chr14:102706557-102706760(-)$1	203	99	102	8.9999
cc"	chrM:488-713(+)$1	225	94	97	8.9999
EEE	chrM:4324-4547(+)$1	223	13	16	8.9999
:::	chr7:103029312-103029525(-)$1	213	13	16	8.9999
KCC	chrM:4193-4430(+)$1	237	19	22	8.9999
pdd	chr13:92003090-92003315(+)$1	225	95	98	8.9999

#DB
(((	chr6:31958179-31958384(+)$1	1	7	10	8.9999
((.	chr14:32954185-32954427(+)$1	1	40	43	8.9999
(((	chr4:83816904-83817169(-)$1	1	23	26	8.9999
.((	chr6:27860378-27860619(-)$1	1	101	104	8.9999
(.(	chrM:9852-10078(+)$1	1	91	94	8.9999
...	chr3:193373466-193373676(+)$1	1	4	7	8.9999
..(	chr7:103029306-103029512(-)$1	1	0	3	8.9999
..)	chr12:48416393-48416608(+)$1	1	186	189	8.9999
..(	chr6:27792114-27792355(+)$1	1	40	43	8.9999
((.	chrM:516-721(+)$1	1	66	69	8.9999
)))	chr9:139565014-139565228(+)$1	1	107	110	8.9999
..)	chrM:12176-12400(+)$1	1	58	61	8.9999
)).	chr12:48416389-48416593(+)$1	1	190	193	8.9999
...	chr12:69236346-69236554(-)$1	1	104	107	8.9999
(((	chr1:173835354-173835573(-)$1	1	8	11	8.9999
(((	chr13:92003225-92003447(+)$1	1	13	16	8.9999
(.(	chr3:193373476-193373688(+)$1	1	12	15	8.9999
..(	chr1:173835344-173835554(-)$1	1	36	39	8.9999
)))	chr9:139565003-139565214(+)$1	1	118	121	8.9999
(((	chr15:74222561-74222772(+)$1	1	54	57	8.9999
...	chr19:893479-893691(+)$1	1	59	62	8.9999
.((	chr11:106689567-106689780(-)$1	1	62	65	8.9999
(((	chr15:74222553-74222761(+)$1	1	62	65	8.9999
..(	chrM:4347-4557(+)$1	1	97	100	8.9999
.((	chr11:106689580-106689788(-)$1	1	70	73	8.9999
..(	chr14:102706557-102706760(-)$1	1	99	102	8.9999
((.	chrM:488-713(+)$1	1	94	97	8.9999
(((	chrM:4324-4547(+)$1	1	13	16	8.9999
...	chr7:103029312-103029525(-)$1	1	13	16	8.9999
.((	chrM:4193-4430(+)$1	1	19	22	8.9999
.))	chr13:92003090-92003315(+)$1	1	95	98	8.9999

#PSSM
A : 0.74	a : 0.25	
U : 0.74	u : 0.25	
G : 0.74	g : 0.25	

#score	278.99999999999994
#seq	31
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_transcript_m1_run2.nuc.txt

#NT
GAGGCUC	chr17:46697741-46697992(-)$1	251	54	61	12.8309
GAAGCUG	chr1:2215010-2215267(+)$1	257	184	191	13.1126
GAGUCUG	chr13:92000169-92000431(+)$1	262	46	53	13.0422
GAGGCUG	chr16:89018820-89019057(-)$1	237	32	39	17.0563
gagggug	chr16:85651905-85652171(+)$1	266	23	30	12.8309
gagccug	chr6:167406140-167406422(-)$1	282	113	120	13.0422
GAGGCGG	chr22:49941546-49941892(-)$1	346	187	194	12.8309
gaagcug	chr5:109035342-109035588(-)$1	246	176	183	13.1126
GAGCCUG	chr9:134349890-134350156(+)$1	266	191	198	13.0422
GAGGGUG	chr1:2204800-2205059(+)$1	259	21	28	12.8309
GAAGCUG	chr22:49942119-49942384(-)$1	265	170	177	13.1126
GAGGCUU	chr8:94748356-94748602(-)$1	246	87	94	12.7605
gagggug	chr13:92000342-92000631(+)$1	289	95	102	12.8309
GAGGUUG	chr16:89033284-89033511(-)$1	227	41	48	12.7605
GAGGCUU	chr16:89186802-89187043(+)$1	241	72	79	12.7605
GCGGCUG	chr22:19875718-19875986(-)$1	268	35	42	12.9718
GAGGCUG	chr5:71492048-71492300(+)$1	252	74	81	17.0563
GAUGCUG	chr9:139128130-139128379(-)$1	249	9	16	12.6901
GAGGCUG	chr9:139126558-139126811(-)$1	253	104	111	17.0563
GGGGCUG	chr19:5078206-5078463(+)$1	257	229	236	13.2535
gaggcuc	chr8:610428-610675(-)$1	247	187	194	12.8309
GAGUCUG	chr16:89032457-89032739(-)$1	282	61	68	13.0422
GAGGUUG	chr12:125396249-125396514(-)$1	265	143	150	12.7605
GAAGCUG	chr16:89348751-89348973(-)$1	222	49	56	13.1126
GAGGCUG	chr1:2214340-2214619(+)$1	279	37	44	17.0563
GAGGCUG	chr11:71724492-71724737(-)$1	245	86	93	17.0563
gaagcug	chr18:75689611-75689866(-)$1	255	37	44	13.1126
GGGGCUG	chr12:133126804-133127053(+)$1	249	26	33	13.2535
gaagcug	chr18:75689953-75690210(-)$1	257	86	93	13.1126
GGGGCUG	chr9:94687449-94687758(-)$1	309	90	97	13.2535
GGGGCUG	chr12:133353498-133353772(-)$1	274	242	249	13.2535
gaggcug	chr16:1805970-1806255(+)$1	285	23	30	17.0563
GAGGCUG	chr1:2179346-2179609(+)$1	263	155	162	17.0563
GAGCCUG	chr7:1154799-1155069(-)$1	270	74	81	13.0422
AAGGCUG	chr18:47794912-47795264(-)$1	352	210	217	12.5492
GAGGCCG	chr19:2270320-2270598(+)$1	278	144	151	12.8309
UAGGCUG	chr8:141109942-141110195(-)$1	253	69	76	12.4788
gagucug	chr22:49936756-49937006(-)$1	250	157	164	13.0422
GAGGCUG	chr1:2214280-2214540(+)$1	260	97	104	17.0563
GAAGCUG	chr8:144671561-144671876(-)$1	315	5	12	13.1126
GCGGCUG	chr8:144998225-144998463(-)$1	238	0	7	12.9718
GGGGCUG	chr20:62551622-62551869(+)$1	247	14	21	13.2535
GGGGCUG	chr7:1887656-1887908(-)$1	252	84	91	13.2535
gaggcag	chr7:2080668-2080920(-)$1	252	91	98	12.7605
gagacug	chr10:133763810-133764059(+)$1	249	133	140	12.9014
gagggug	chr22:49858059-49858340(-)$1	281	132	139	12.8309
CAGGCUG	chr7:1132490-1132768(-)$1	278	8	15	12.5492
GAGGCGG	chr16:89348634-89348889(-)$1	255	131	138	12.8309
GAGGCUG	chr8:144999533-144999816(-)$1	283	169	176	17.0563
GAGGCUC	chr16:89348258-89348499(-)$1	241	118	125	12.8309
GAGACUG	chr22:49861722-49861970(-)$1	248	184	191	12.9014
GAGGCUG	chr11:71725178-71725442(-)$1	264	221	228	17.0563
AAGGCUG	chr19:5081281-5081550(+)$1	269	162	169	12.5492
gaggcuu	chr17:41466236-41466459(-)$1	223	127	134	12.7605
GAGUCUG	chr19:5079358-5079613(+)$1	255	225	232	13.0422
CAGGCUG	chr8:41791119-41791403(-)$1	284	46	53	12.5492
GAGGCCG	chr7:5569883-5570148(-)$1	265	190	197	12.8309
GUGGCUG	chr16:88957408-88957673(-)$1	265	128	135	13.0422
GUGGCUG	chr16:89029112-89029349(-)$1	237	212	219	13.0422
GAGGCUC	chr18:75689366-75689614(-)$1	248	80	87	12.8309
GAGGCUG	chr22:48183760-48184019(+)$1	259	200	207	17.0563
GAGGCUG	chr9:139559566-139559894(+)$1	328	206	213	17.0563
GAGGCUG	chr9:139565251-139565507(+)$1	256	181	188	17.0563
GAGCCUG	chr1:2161316-2161580(+)$1	264	69	76	13.0422
GUGGCUG	chr7:1886102-1886348(-)$1	246	159	166	13.0422
GAGGCUG	chr1:2214482-2214752(+)$1	270	117	124	17.0563
GAGGCUG	chr1:2210006-2210244(+)$1	238	171	178	17.0563
GAGGUUG	chr9:138752650-138752986(-)$1	336	132	139	12.7605
gaggcag	chr19:37500402-37500650(+)$1	248	159	166	12.7605
GAGGCGG	chr16:89350125-89350439(-)$1	314	153	160	12.8309

#otherMatches

#Struct PSSM
ff55555	chr11:454335-454609(+)$1	274	231	238	12.8309
bbFFFFF	chr17:46697741-46697992(-)$1	251	54	61	12.8309
a]ccc:E	chr1:2215010-2215267(+)$1	257	184	191	13.1126
{IIIIII	chr13:92000169-92000431(+)$1	262	46	53	13.0422
b333ggg	chr16:89018820-89019057(-)$1	237	32	39	17.0563
ffffff:	chr16:85651905-85652171(+)$1	266	23	30	12.8309
eee333c	chr6:167406140-167406422(-)$1	282	113	120	13.0422
%%eeeee	chr22:49941546-49941892(-)$1	346	187	194	12.8309
22ddddb	chr5:109035342-109035588(-)$1	246	176	183	13.1126
c[a[eee	chr9:134349890-134350156(+)$1	266	191	198	13.0422
ogggggg	chr1:2204800-2205059(+)$1	259	21	28	12.8309
::=====	chr22:49942119-49942384(-)$1	265	170	177	13.1126
fffeeee	chr8:94748356-94748602(-)$1	246	87	94	12.7605
e]dddd2	chr13:92000342-92000631(+)$1	289	95	102	12.8309
iiiiiii	chr16:89033284-89033511(-)$1	227	41	48	12.7605
22dddd2	chr16:89186802-89187043(+)$1	241	72	79	12.7605
fff]bb2	chr22:19875718-19875986(-)$1	268	35	42	12.9718
b]eeeee	chr5:71492048-71492300(+)$1	252	74	81	17.0563
FFFFFF:	chr9:139128130-139128379(-)$1	249	9	16	12.6901
ooobb::	chr9:139126558-139126811(-)$1	253	104	111	17.0563
HHHHHHH	chr19:5078206-5078463(+)$1	257	229	236	13.2535
gggg]cc	chr8:610428-610675(-)$1	247	187	194	12.8309
h:ddddq	chr16:89032457-89032739(-)$1	282	61	68	13.0422
mmmgggg	chr12:125396249-125396514(-)$1	265	143	150	12.7605
yyyyyyy	chr16:89348751-89348973(-)$1	222	49	56	13.1126
fffff!!	chr1:2214340-2214619(+)$1	279	37	44	17.0563
ddddddd	chr11:71724492-71724737(-)$1	245	86	93	17.0563
###eeee	chr18:75689611-75689866(-)$1	255	37	44	13.1126
======l	chr12:133126804-133127053(+)$1	249	26	33	13.2535
"""dddd	chr18:75689953-75690210(-)$1	257	86	93	13.1126
FFFFFF{	chr9:94687449-94687758(-)$1	309	90	97	13.2535
]ffffff	chr12:133353498-133353772(-)$1	274	242	249	13.2535
::eeeee	chr16:1805970-1806255(+)$1	285	23	30	17.0563
eeeeeee	chr1:2179346-2179609(+)$1	263	155	162	17.0563
22ccc]d	chr7:1154799-1155069(-)$1	270	74	81	13.0422
KKEEEEE	chr18:47794912-47795264(-)$1	352	210	217	12.5492
]aGGGGG	chr19:2270320-2270598(+)$1	278	144	151	12.8309
qqqqqqb	chr8:141109942-141110195(-)$1	253	69	76	12.4788
GGGGGGZ	chr22:49936756-49937006(-)$1	250	157	164	13.0422
hhhhhhh	chr1:2214280-2214540(+)$1	260	97	104	17.0563
EKKCCC{	chr8:144671561-144671876(-)$1	315	5	12	13.1126
CCC{DDD	chr8:144998225-144998463(-)$1	238	0	7	12.9718
JJJHHHH	chr20:62551622-62551869(+)$1	247	14	21	13.2535
hhhh!!c	chr7:1887656-1887908(-)$1	252	84	91	13.2535
hdddd!!	chr7:2080668-2080920(-)$1	252	91	98	12.7605
::bbccc	chr10:133763810-133764059(+)$1	249	133	140	12.9014
::dddd[	chr22:49858059-49858340(-)$1	281	132	139	12.8309
cccBB{E	chr7:1132490-1132768(-)$1	278	8	15	12.5492
22a]bb:	chr16:89348634-89348889(-)$1	255	131	138	12.8309
a[a[ccc	chr8:144999533-144999816(-)$1	283	169	176	17.0563
555eeee	chr16:89348258-89348499(-)$1	241	118	125	12.8309
ffff22b	chr22:49861722-49861970(-)$1	248	184	191	12.9014
E}GGGGG	chr11:71725178-71725442(-)$1	264	221	228	17.0563
b22dddd	chr19:5081281-5081550(+)$1	269	162	169	12.5492
}BB}GGG	chr17:41466236-41466459(-)$1	223	127	134	12.7605
}A}BBBB	chr19:5079358-5079613(+)$1	255	225	232	13.0422
::GGGGG	chr8:41791119-41791403(-)$1	284	46	53	12.5492
ffffff[	chr7:5569883-5570148(-)$1	265	190	197	12.8309
dd]eeee	chr16:88957408-88957673(-)$1	265	128	135	13.0422
e[aoooo	chr16:89029112-89029349(-)$1	237	212	219	13.0422
fff7777	chr18:75689366-75689614(-)$1	248	80	87	12.8309
mmmmbb]	chr22:48183760-48184019(+)$1	259	200	207	17.0563
5eeeee]	chr9:139559566-139559894(+)$1	328	206	213	17.0563
ellleee	chr9:139565251-139565507(+)$1	256	181	188	17.0563
e:FFFFF	chr1:2161316-2161580(+)$1	264	69	76	13.0422
HHHHHHC	chr7:1886102-1886348(-)$1	246	159	166	13.0422
IIII::c	chr1:2214482-2214752(+)$1	270	117	124	17.0563
b]fffff	chr1:2210006-2210244(+)$1	238	171	178	17.0563
ppdddd]	chr9:138752650-138752986(-)$1	336	132	139	12.7605
::ccc[f	chr19:37500402-37500650(+)$1	248	159	166	12.7605
tttbb]a	chr16:89350125-89350439(-)$1	314	153	160	12.8309

#DB
)).....	chr11:454335-454609(+)$1	1	231	238	12.8309
)))))))	chr17:46697741-46697992(-)$1	1	54	61	12.8309
).))).)	chr1:2215010-2215267(+)$1	1	184	191	13.1126
.((((((	chr13:92000169-92000431(+)$1	1	46	53	13.0422
)...)))	chr16:89018820-89019057(-)$1	1	32	39	17.0563
)))))).	chr16:85651905-85652171(+)$1	1	23	30	12.8309
)))...)	chr6:167406140-167406422(-)$1	1	113	120	13.0422
..(((((	chr22:49941546-49941892(-)$1	1	187	194	12.8309
..)))))	chr5:109035342-109035588(-)$1	1	176	183	13.1126
(.(.(((	chr9:134349890-134350156(+)$1	1	191	198	13.0422
.))))))	chr1:2204800-2205059(+)$1	1	21	28	12.8309
..(((((	chr22:49942119-49942384(-)$1	1	170	177	13.1126
(((((((	chr8:94748356-94748602(-)$1	1	87	94	12.7605
).)))).	chr13:92000342-92000631(+)$1	1	95	102	12.8309
)))))))	chr16:89033284-89033511(-)$1	1	41	48	12.7605
..)))).	chr16:89186802-89187043(+)$1	1	72	79	12.7605
))).)).	chr22:19875718-19875986(-)$1	1	35	42	12.9718
).)))))	chr5:71492048-71492300(+)$1	1	74	81	17.0563
((((((.	chr9:139128130-139128379(-)$1	1	9	16	12.6901
...))..	chr9:139126558-139126811(-)$1	1	104	111	17.0563
)))))))	chr19:5078206-5078463(+)$1	1	229	236	13.2535
)))).))	chr8:610428-610675(-)$1	1	187	194	12.8309
).((((.	chr16:89032457-89032739(-)$1	1	61	68	13.0422
...))))	chr12:125396249-125396514(-)$1	1	143	150	12.7605
.......	chr16:89348751-89348973(-)$1	1	49	56	13.1126
(((((..	chr1:2214340-2214619(+)$1	1	37	44	17.0563
)))((((	chr11:71724492-71724737(-)$1	1	86	93	17.0563
...((((	chr18:75689611-75689866(-)$1	1	37	44	13.1126
((((((.	chr12:133126804-133127053(+)$1	1	26	33	13.2535
...((((	chr18:75689953-75690210(-)$1	1	86	93	13.1126
((((((.	chr9:94687449-94687758(-)$1	1	90	97	13.2535
.))))))	chr12:133353498-133353772(-)$1	1	242	249	13.2535
..(((((	chr16:1805970-1806255(+)$1	1	23	30	17.0563
)))))((	chr1:2179346-2179609(+)$1	1	155	162	17.0563
..))).)	chr7:1154799-1155069(-)$1	1	74	81	13.0422
..(((((	chr18:47794912-47795264(-)$1	1	210	217	12.5492
.))))))	chr19:2270320-2270598(+)$1	1	144	151	12.8309
......)	chr8:141109942-141110195(-)$1	1	69	76	12.4788
)))))).	chr22:49936756-49937006(-)$1	1	157	164	13.0422
(((((((	chr1:2214280-2214540(+)$1	1	97	104	17.0563
(..(((.	chr8:144671561-144671876(-)$1	1	5	12	13.1126
(((.(((	chr8:144998225-144998463(-)$1	1	0	7	12.9718
(((((((	chr20:62551622-62551869(+)$1	1	14	21	13.2535
((((..(	chr7:1887656-1887908(-)$1	1	84	91	13.2535
(((((..	chr7:2080668-2080920(-)$1	1	91	98	12.7605
..(((((	chr10:133763810-133764059(+)$1	1	133	140	12.9014
..((((.	chr22:49858059-49858340(-)$1	1	132	139	12.8309
)))((.(	chr7:1132490-1132768(-)$1	1	8	15	12.5492
..).)).	chr16:89348634-89348889(-)$1	1	131	138	12.8309
(.(.(((	chr8:144999533-144999816(-)$1	1	169	176	17.0563
...))))	chr16:89348258-89348499(-)$1	1	118	125	12.8309
))))..)	chr22:49861722-49861970(-)$1	1	184	191	12.9014
).)))))	chr11:71725178-71725442(-)$1	1	221	228	17.0563
)..))))	chr19:5081281-5081550(+)$1	1	162	169	12.5492
.)).)))	chr17:41466236-41466459(-)$1	1	127	134	12.7605
.).))))	chr19:5079358-5079613(+)$1	1	225	232	13.0422
..(((((	chr8:41791119-41791403(-)$1	1	46	53	12.5492
((((((.	chr7:5569883-5570148(-)$1	1	190	197	12.8309
)).))))	chr16:88957408-88957673(-)$1	1	128	135	13.0422
(.(....	chr16:89029112-89029349(-)$1	1	212	219	13.0422
)))....	chr18:75689366-75689614(-)$1	1	80	87	12.8309
....)).	chr22:48183760-48184019(+)$1	1	200	207	17.0563
.))))).	chr9:139559566-139559894(+)$1	1	206	213	17.0563
(...)))	chr9:139565251-139565507(+)$1	1	181	188	17.0563
).(((((	chr1:2161316-2161580(+)$1	1	69	76	13.0422
)))))))	chr7:1886102-1886348(-)$1	1	159	166	13.0422
((((..(	chr1:2214482-2214752(+)$1	1	117	124	17.0563
).)))))	chr1:2210006-2210244(+)$1	1	171	178	17.0563
..)))).	chr9:138752650-138752986(-)$1	1	132	139	12.7605
..(((.(	chr19:37500402-37500650(+)$1	1	159	166	12.7605
...)).)	chr16:89350125-89350439(-)$1	1	153	160	12.8309

#PSSM
G : 0.71	g : 0.21	A : 0.02	C : 0.02	U : 0.01	
A : 0.63	a : 0.21	G : 0.08	U : 0.04	C : 0.02	
G : 0.71	g : 0.16	A : 0.05	a : 0.04	U : 0.01	
G : 0.69	g : 0.16	U : 0.04	C : 0.04	c : 0.01	u : 0.01	a : 0.01	A : 0.01	
C : 0.73	c : 0.16	g : 0.04	U : 0.04	G : 0.01	
U : 0.71	u : 0.16	G : 0.04	C : 0.02	a : 0.02	c : 0.01	
G : 0.71	g : 0.18	C : 0.04	U : 0.02	c : 0.01	u : 0.01	

#score	979.4507042253516
#seq	71
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_transcript_m3_run1.nuc.txt

#NT
GGGAGGGGG	chr11:63971787-63972063(+)$1	276	132	141	16.7222
CGGUGGGGG	chr19:59067134-59067383(-)$1	249	21	30	16.4444
GGGUGGAGG	chr17:79668815-79669103(+)$1	288	239	248	16.4444
GGAUGGGGG	chr6:34214267-34214547(-)$1	280	219	228	16.4444
GGGUGGGGC	chr9:139566824-139567100(+)$1	276	247	256	18.7592
GAGUGGGGG	chr17:38153980-38154244(+)$1	264	142	151	16.7222
GGGAGGGGC	chr3:129033772-129034009(-)$1	237	28	37	14.6851
AGGUGGGGA	chr11:70281333-70281576(+)$1	243	53	62	14.9629
GGGUGAGGG	chr8:145699227-145699473(+)$1	246	203	212	17.2777
GGGUGGGGC	chr3:48481604-48481822(+)$1	218	44	53	18.7592
GGGUGGCGG	chr11:64533291-64533537(-)$1	246	183	192	16.2592
GGGUGUGGG	chr19:42409825-42410080(+)$1	255	52	61	17.2777
GGCUGGGGG	chr17:42430580-42430896(-)$1	316	34	43	16.7222
GGGCGGGGU	chr6:43196996-43197299(-)$1	303	42	51	14.1296
GGGUGCGGU	chr19:5205786-5206063(-)$1	277	166	175	14.9629
GGGUGGGUG	chrX:48830109-48830384(-)$1	275	147	156	16.1666
GGGUGGGGA	chr3:48481718-48481939(+)$1	221	42	51	19.0370
GGGUGGAGG	chr19:2754945-2755218(-)$1	273	156	165	16.4444
ggguggggg	chrX:153609537-153609772(+)$1	235	91	100	20.7962
GGGUGGGGG	chr19:45650239-45650491(+)$1	252	45	54	20.7962
GGGGGGGGA	chr19:40721230-40721528(+)$1	298	98	107	14.6851
GGGUGGGAG	chr16:2820997-2821229(+)$1	232	90	99	16.2592
GGGUGAGGA	chr17:76109526-76109781(-)$1	255	78	87	15.5185
GGGUGUGGA	chr19:17387524-17387801(+)$1	277	226	235	15.5185
GGCUGGGGU	chr19:18702855-18703134(+)$1	279	212	221	14.4074
GGGUGAGGC	chr7:127228508-127228717(+)$1	209	109	118	15.2407
gggugcggg	chr3:48481754-48481968(+)$1	214	140	149	17.2777
gAGUGGGGA	chr1:1822232-1822541(-)$1	309	105	114	14.9629
GGGUGGGGU	chr19:896918-897155(-)$1	237	199	208	18.4814
GGGUGGGGU	chr19:50363433-50363687(+)$1	254	210	219	18.4814
AGGUGCGGG	chr9:131772028-131772251(-)$1	223	200	209	13.2037
GGGAGGGGA	chr19:35770182-35770458(+)$1	276	260	269	14.9629
GGUUGGGGG	chr11:62360892-62361140(-)$1	248	170	179	16.4444
GAGUGGGGA	chr7:45139685-45139961(-)$1	276	143	152	14.9629
GGGUGGAGG	chr16:30535528-30535773(-)$1	245	68	77	16.4444
GGGUGGGGC	chr6:32948759-32948980(+)$1	221	125	134	18.7592
UGGUGGGGG	chr16:450306-450647(+)$1	341	268	277	16.4444
GGGUGGGGG	chr2:220403040-220403254(+)$1	214	68	77	20.7962
GGCUGGGGG	chr7:6695637-6695883(+)$1	246	66	75	16.7222
GGGUGUGGA	chr7:150773274-150773536(+)$1	262	140	149	15.5185
GGGUGGGGC	chr1:46654527-46654768(-)$1	241	220	229	18.7592
GGGUGAGGG	chr12:53689569-53689790(+)$1	221	169	178	17.2777
GGGUggggc	chr19:42463288-42463589(-)$1	301	61	70	18.7592
AGGUGGGGG	chr7:75615168-75615397(+)$1	229	78	87	16.7222
AGGUGCGGG	chr19:2427311-2427603(-)$1	292	190	199	13.2037
GGGUUGGGG	chr11:57510234-57510463(+)$1	229	19	28	15.9814
GAGUGGGGA	chr7:45139761-45140082(-)$1	321	264	273	14.9629
GGGAGGGGG	chr15:74701883-74702160(-)$1	277	65	74	16.7222
GGGUGUGGG	chr1:150237745-150238024(-)$1	279	103	112	17.2777
GAGUGGGGA	chr17:27941169-27941435(+)$1	266	173	182	14.9629
ggcuggggg	chr19:18654195-18654455(-)$1	260	105	114	16.7222
GGGUGGGAG	chr16:2820926-2821145(+)$1	219	161	170	16.2592
GGGUGGGGC	chr1:46654471-46654727(-)$1	256	179	188	18.7592

#otherMatches

#Struct PSSM
=========	chr19:6413827-6414050(-)$1	223	64	73	20.7962
hhhh[a[bb	chr11:63971787-63972063(+)$1	276	132	141	16.7222
dhhhhhhhh	chr19:59067134-59067383(-)$1	249	21	30	16.4444
DDDCCC}FF	chr17:79668815-79669103(+)$1	288	239	248	16.4444
ddd:EEEEE	chr6:34214267-34214547(-)$1	280	219	228	16.4444
DDDD}DDDD	chr9:139566824-139567100(+)$1	276	247	256	18.7592
ddJJJJJJJ	chr17:38153980-38154244(+)$1	264	142	151	16.7222
hhhhhhhh!	chr3:129033772-129034009(-)$1	237	28	37	14.6851
eee]=====	chr11:70281333-70281576(+)$1	243	53	62	14.9629
DYYCCC}DD	chr8:145699227-145699473(+)$1	246	203	212	17.2777
::dddd[bb	chr3:48481604-48481822(+)$1	218	44	53	18.7592
eee]ccchh	chr11:64533291-64533537(-)$1	246	183	192	16.2592
ddd]fffff	chr19:42409825-42410080(+)$1	255	52	61	17.2777
GGGGGG{BB	chr17:42430580-42430896(-)$1	316	34	43	16.7222
KEEEEE{HH	chr6:43196996-43197299(-)$1	303	42	51	14.1296
eee[dddd!	chr19:5205786-5206063(-)$1	277	166	175	14.9629
IIIIIIIIB	chrX:48830109-48830384(-)$1	275	147	156	16.1666
dcccmmmmc	chr3:48481718-48481939(+)$1	221	42	51	19.0370
gggggg!!c	chr19:2754945-2755218(-)$1	273	156	165	16.4444
ccc!!====	chrX:153609537-153609772(+)$1	235	91	100	20.7962
a22eeeee:	chr19:45650239-45650491(+)$1	252	45	54	20.7962
JJJdddd[c	chr19:40721230-40721528(+)$1	298	98	107	14.6851
a]a]ddddg	chr16:2820997-2821229(+)$1	232	90	99	16.2592
bbffffff^	chr17:76109526-76109781(-)$1	255	78	87	15.5185
iiiiiii!!	chr19:17387524-17387801(+)$1	277	226	235	15.5185
gggggggbb	chr19:18702855-18703134(+)$1	279	212	221	14.4074
]hhhhhhhh	chr7:127228508-127228717(+)$1	209	109	118	15.2407
d[bbbb!!d	chr3:48481754-48481968(+)$1	214	140	149	17.2777
c[ccc[a!!	chr1:1822232-1822541(-)$1	309	105	114	14.9629
ggghhhhhh	chr19:896918-897155(-)$1	237	199	208	18.4814
JJJJJJJJY	chr19:50363433-50363687(+)$1	254	210	219	18.4814
d]ccc]a]b	chr9:131772028-131772251(-)$1	223	200	209	13.2037
HHHHHHHH}	chr19:35770182-35770458(+)$1	276	260	269	14.9629
f:::=====	chr11:62360892-62361140(-)$1	248	170	179	16.4444
IDDDD{JJJ	chr7:45139685-45139961(-)$1	276	143	152	14.9629
hhhhh!!ap	chr16:30535528-30535773(-)$1	245	68	77	16.4444
iiiiiiiii	chr6:32948759-32948980(+)$1	221	125	134	18.7592
\\GGGGGGG	chr16:450306-450647(+)$1	341	268	277	16.4444
nnnnnbb22	chr2:220403040-220403254(+)$1	214	68	77	20.7962
[dddd!!a[	chr7:6695637-6695883(+)$1	246	66	75	16.7222
ff22dddd]	chr7:150773274-150773536(+)$1	262	140	149	15.5185
HHHHHEEEE	chr1:46654527-46654768(-)$1	241	220	229	18.7592
FFFFEEEEE	chr12:53689569-53689790(+)$1	221	169	178	17.2777
llffffff]	chr19:42463288-42463589(-)$1	301	61	70	18.7592
CC{DDDD{C	chr7:75615168-75615397(+)$1	229	78	87	16.7222
::::hhhhh	chr19:2427311-2427603(-)$1	292	190	199	13.2037
=========	chr11:57510234-57510463(+)$1	229	19	28	15.9814
I}EEEEE}D	chr7:45139761-45140082(-)$1	321	264	273	14.9629
ee!!dddd[	chr15:74701883-74702160(-)$1	277	65	74	16.7222
]eeeee:::	chr1:150237745-150238024(-)$1	279	103	112	17.2777
::FFFFFF}	chr17:27941169-27941435(+)$1	266	173	182	14.9629
e]bbfffff	chr19:18654195-18654455(-)$1	260	105	114	16.7222
a]a]ddddg	chr16:2820926-2821145(+)$1	219	161	170	16.2592
HHHHHdddd	chr1:46654471-46654727(-)$1	256	179	188	18.7592

#DB
(((((((((	chr19:6413827-6414050(-)$1	1	64	73	20.7962
((((.(.((	chr11:63971787-63972063(+)$1	1	132	141	16.7222
(((((((((	chr19:59067134-59067383(-)$1	1	21	30	16.4444
)))))).))	chr17:79668815-79669103(+)$1	1	239	248	16.4444
))).)))))	chr6:34214267-34214547(-)$1	1	219	228	16.4444
)))).))))	chr9:139566824-139567100(+)$1	1	247	256	18.7592
))(((((((	chr17:38153980-38154244(+)$1	1	142	151	16.7222
((((((((.	chr3:129033772-129034009(-)$1	1	28	37	14.6851
))).)))))	chr11:70281333-70281576(+)$1	1	53	62	14.9629
)..))).))	chr8:145699227-145699473(+)$1	1	203	212	17.2777
..((((.((	chr3:48481604-48481822(+)$1	1	44	53	18.7592
))).)))))	chr11:64533291-64533537(-)$1	1	183	192	16.2592
))).)))))	chr19:42409825-42410080(+)$1	1	52	61	17.2777
((((((.((	chr17:42430580-42430896(-)$1	1	34	43	16.7222
.(((((.((	chr6:43196996-43197299(-)$1	1	42	51	14.1296
(((.((((.	chr19:5205786-5206063(-)$1	1	166	175	14.9629
(((((((((	chrX:48830109-48830384(-)$1	1	147	156	16.1666
)(((....)	chr3:48481718-48481939(+)$1	1	42	51	19.0370
((((((..(	chr19:2754945-2755218(-)$1	1	156	165	16.4444
(((..((((	chrX:153609537-153609772(+)$1	1	91	100	20.7962
)..))))).	chr19:45650239-45650491(+)$1	1	45	54	20.7962
(((((((.(	chr19:40721230-40721528(+)$1	1	98	107	14.6851
).).)))))	chr16:2820997-2821229(+)$1	1	90	99	16.2592
((((((((.	chr17:76109526-76109781(-)$1	1	78	87	15.5185
(((((((..	chr19:17387524-17387801(+)$1	1	226	235	15.5185
)))))))))	chr19:18702855-18703134(+)$1	1	212	221	14.4074
.))))))))	chr7:127228508-127228717(+)$1	1	109	118	15.2407
(.((((..(	chr3:48481754-48481968(+)$1	1	140	149	17.2777
(.(((.(..	chr1:1822232-1822541(-)$1	1	105	114	14.9629
(((((((((	chr19:896918-897155(-)$1	1	199	208	18.4814
)))))))).	chr19:50363433-50363687(+)$1	1	210	219	18.4814
).))).).)	chr9:131772028-131772251(-)$1	1	200	209	13.2037
)))))))).	chr19:35770182-35770458(+)$1	1	260	269	14.9629
)...(((((	chr11:62360892-62361140(-)$1	1	170	179	16.4444
)((((.(((	chr7:45139685-45139961(-)$1	1	143	152	14.9629
(((((..(.	chr16:30535528-30535773(-)$1	1	68	77	16.4444
)))))))))	chr6:32948759-32948980(+)$1	1	125	134	18.7592
..)))))))	chr16:450306-450647(+)$1	1	268	277	16.4444
.....))..	chr2:220403040-220403254(+)$1	1	68	77	20.7962
.((((..(.	chr7:6695637-6695883(+)$1	1	66	75	16.7222
))..)))).	chr7:150773274-150773536(+)$1	1	140	149	15.5185
)))))))))	chr1:46654527-46654768(-)$1	1	220	229	18.7592
)))))))))	chr12:53689569-53689790(+)$1	1	169	178	17.2777
..)))))).	chr19:42463288-42463589(-)$1	1	61	70	18.7592
((.((((.(	chr7:75615168-75615397(+)$1	1	78	87	16.7222
....(((((	chr19:2427311-2427603(-)$1	1	190	199	13.2037
(((((((((	chr11:57510234-57510463(+)$1	1	19	28	15.9814
).))))).)	chr7:45139761-45140082(-)$1	1	264	273	14.9629
((..((((.	chr15:74701883-74702160(-)$1	1	65	74	16.7222
.)))))...	chr1:150237745-150238024(-)$1	1	103	112	17.2777
..)))))).	chr17:27941169-27941435(+)$1	1	173	182	14.9629
).)))))))	chr19:18654195-18654455(-)$1	1	105	114	16.7222
).).)))))	chr16:2820926-2821145(+)$1	1	161	170	16.2592
)))))((((	chr1:46654471-46654727(-)$1	1	179	188	18.7592

#PSSM
G : 0.81	A : 0.07	g : 0.07	C : 0.01	U : 0.01	
G : 0.85	A : 0.09	g : 0.05	
G : 0.85	C : 0.05	g : 0.03	A : 0.01	U : 0.01	c : 0.01	
U : 0.83	A : 0.07	u : 0.05	C : 0.01	G : 0.01	
G : 0.90	g : 0.07	U : 0.01	
G : 0.72	A : 0.07	U : 0.07	C : 0.05	g : 0.05	c : 0.01	
G : 0.85	g : 0.07	A : 0.05	C : 0.01	
G : 0.87	g : 0.07	A : 0.03	U : 0.01	
G : 0.49	A : 0.20	C : 0.12	U : 0.09	g : 0.05	c : 0.01	

#score	902.0740740740727
#seq	54
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_transcript_m3_run1.nuc.txt

#NT
GGGGGGAUGGGUGGCUAGGGG	chr3:9438829-9439066(-)$1	237	2	23	15.6415
GGGCGGGAGCGCCGCAGGGGG	chr3:128212003-128212285(+)$1	282	108	129	20.5471
GGUUGGGGGAGGGAGGGGGGU	chr5:170815512-170815747(+)$1	235	81	102	20.2641
gggccgggccgggcggcgggg	chr7:100171280-100171537(-)$1	257	116	137	19.6981
Gggcggcggcggcggcgccgg	chr1:150947039-150947330(-)$1	291	55	76	18.7547
ccgcgggggugggcgggcggg	chr11:64073169-64073454(+)$1	285	63	84	19.1320
CGGUGGGGGUGUGUGUGAGAG	chr22:20110999-20111235(+)$1	236	9	30	15.5471
ggguggggguggggguggggg	chr3:41241218-41241473(+)$1	255	231	252	32.1509
GGGGAAAAGGGGGGAUggggg	chr12:7037365-7037609(+)$1	244	0	21	16.1132
GGGCGGGCCUGGAGGGGUGGG	chr22:49981004-49981258(-)$1	254	84	105	22.3396
CGGGAGGGGUGGGGGUCGGCG	chr13:27745068-27745332(-)$1	264	93	114	18.7547
GGGUGGGCGAGGGUGUGGGGU	chr2:97534834-97535126(-)$1	292	42	63	22.6226
GGGAGGCGGAGCGUGGGUGGG	chr21:44495095-44495329(-)$1	234	10	31	18.9433
GGGAAGGGAAGGUGGUGGUGG	chr11:378205-378475(+)$1	270	77	98	18.2830
GGAGGAGGGUGGGCCUGGGAG	chr16:1427536-1427760(-)$1	224	108	129	15.6415
gggcaggagggcggguggggc	chr6:15248583-15248817(+)$1	234	7	28	21.3962
GGGAAGGAGUGGGUUGGGGGG	chr6:167369109-167369361(-)$1	252	74	95	20.9245
GGGAAGGAGCGCGGGAGGAGG	chr17:8533100-8533345(-)$1	245	137	158	18.7547
gggcggggacggaggggcggu	chr2:97535541-97535801(-)$1	260	45	66	18.6603
gggugggugagugggugggug	chr2:97559879-97560169(-)$1	290	64	85	21.7735
CGCCGGGGCUGGGGCCGGGAG	chr4:1873233-1873512(+)$1	279	75	96	17.9056
gggcgcgcgggcgggcgggcg	chr2:47402798-47403050(-)$1	252	16	37	21.3962
CGGCGGGCGAGCGGGCGCCGG	chr22:21772144-21772396(+)$1	252	3	24	17.9056
GCGCGAGGGUGGGCGGAGGGG	chr13:92000572-92000888(+)$1	316	215	236	17.9999
GGGAGGGGCAUGGGUCGGAGG	chr19:2269964-2270232(+)$1	268	41	62	17.7169
AGUUUGGGGUGGGGCUGGGGA	chr19:18668655-18668969(+)$1	314	96	117	14.6037
GGGUGGUCGCGGGUAGGUGGG	chr11:32915014-32915274(+)$1	260	25	46	16.0188
GGGACAGGGUGGGGGCUGGGG	chr22:20127688-20127958(+)$1	270	110	131	20.2641
Gggaggaggaggaggaggagg	chr4:174254962-174255293(-)$1	331	265	286	19.6981
GGUcggccgcgggcgggcggg	chr9:126692129-126692438(-)$1	309	183	204	17.2452
GGUUGGGGGUCAGGCGGGGCG	chr12:109124501-109124760(-)$1	259	171	192	14.6037
gggcgcgcgggcgggcgggcg	chr2:47402941-47403207(-)$1	266	173	194	21.3962
CGGCGGGGCUUGGGACGGGGA	chr20:35491744-35491989(-)$1	245	83	104	16.2075
cgccggggccggggucggggc	chr7:148580805-148581093(-)$1	288	146	167	16.4905
gggggugggaggggcccgggc	chr19:1652281-1652538(-)$1	257	85	106	16.1132
gggcgcgcgggcgggcgggcg	chr2:47402869-47403126(-)$1	257	92	113	21.3962
GGGUGGGUUGGGGAGCGGCCG	chr22:20105341-20105596(+)$1	255	92	113	15.5471
GGGAGGAgccgcgggcgggcg	chr1:245026380-245026637(-)$1	257	5	26	19.9811
GGCGGGGCCUGGCGGGCGGGG	chr9:133455117-133455368(+)$1	251	73	94	16.8679
GGGCGGGGCGGCUGUUGGGGG	chr21:46644319-46644582(+)$1	263	130	151	21.9622
GGGAGGGGCUAGGAGGGGGGA	chr12:7036965-7037226(+)$1	261	99	120	18.0943
GGGAGGGCGAGGCGGUGGCGG	chr20:1165811-1166099(-)$1	288	119	140	22.9056
ggacggaggcggcggcggcgg	chr1:1822248-1822535(-)$1	287	55	76	18.8490
GGGCAGGGCUGGGGAGGUGGG	chr17:76117906-76118190(-)$1	284	115	136	21.6792
UGGCGGGGUUGGGUGGGGGGG	chr10:71929879-71930149(-)$1	270	67	88	23.2830
gggcgccggcggggcuggggg	chr7:158621823-158622195(-)$1	372	118	139	23.0943
ggccgggcgggcagguggcgg	chr7:151216103-151216386(-)$1	283	57	78	18.5660
GGAGGGAGGGGGUGGUGUGGG	chr17:76123793-76124093(-)$1	300	121	142	17.7169
CUGCGCGGGUGGGGGUGGUGG	chr1:29507920-29508251(-)$1	331	268	289	18.4716
GGGCAGGUGGGCUGGUGAGGG	chr16:89042609-89042888(-)$1	279	6	27	18.0943
GGGAAGGAGUGGGUUGGGGGG	chr6:167369041-167369303(-)$1	262	16	37	20.9245
GGGGUGAUAGGGGGGUGGGCG	chr17:76122890-76123140(-)$1	250	21	42	15.8301

#otherMatches

#Struct PSSM
[cccpppppppccc]bb22a]	chr14:102228449-102228766(+)$1	317	60	81	21.5849
dd''''''''bb[bb[dddde	chr3:9438829-9439066(-)$1	237	2	23	15.6415
[ddddmmmmdddd]a:CCC}A	chr3:128212003-128212285(+)$1	282	108	129	20.5471
g]bbbb]bb:bbccc!!hhhh	chr5:170815512-170815747(+)$1	235	81	102	20.2641
eeeebb!!ggggggg[dddd"	chr7:100171280-100171537(-)$1	257	116	137	19.6981
FFFFF{CCCCCC{CCC{EEEE	chr1:150947039-150947330(-)$1	291	55	76	18.7547
ccnnnnnccc:BBEEEEE}EE	chr11:64073169-64073454(+)$1	285	63	84	19.1320
cJJJJJJJJJJTTTTTTTTTT	chr22:20110999-20111235(+)$1	236	9	30	15.5471
d22eeeee]a]ccc]a]bb::	chr3:41241218-41241473(+)$1	255	231	252	32.1509
::::::::FFFFFF{CCC{CC	chr12:7037365-7037609(+)$1	244	0	21	16.1132
b22ffffff]bb22=======	chr22:49981004-49981258(-)$1	254	84	105	22.3396
dmmmmdddd4444a]ffffff	chr13:27745068-27745332(-)$1	264	93	114	18.7547
eeeeccc[eeeeehhhhhhhh	chr2:97534834-97535126(-)$1	292	42	63	22.6226
GGGGGGG{A{DDDDNNNNNII	chr21:44495095-44495329(-)$1	234	10	31	18.9433
4a]a4444ccc]ffffff]cc	chr11:378205-378475(+)$1	270	77	98	18.2830
ooooffffff]bbcccmmmmc	chr16:1427536-1427760(-)$1	224	108	129	15.6415
A{AKKDDDD{JJJJJJJJJJJ	chr6:15248583-15248817(+)$1	234	7	28	21.3962
fff::ffffff[ccc[ddddl	chr6:167369109-167369361(-)$1	252	74	95	20.9245
CCCYYBB}EEEEE}AYYAZZZ	chr17:8533100-8533345(-)$1	245	137	158	18.7547
EEEEJJJJJJJJJJ{FFFFFF	chr2:97535541-97535801(-)$1	260	45	66	18.6603
CC{ALLLDDDD::::::::::	chr2:97559879-97560169(-)$1	290	64	85	21.7735
!!ccc[dddd!!ddddmmmmd	chr4:1873233-1873512(+)$1	279	75	96	17.9056
[a[iiiiiiiii"""ccc[a[	chr2:47402798-47403050(-)$1	252	16	37	21.3962
DBB{FFFFFFHHHHHHHH{DD	chr22:21772144-21772396(+)$1	252	3	24	17.9056
mmffffff]cccdddd[bbff	chr13:92000572-92000888(+)$1	316	215	236	17.9999
cc####cccmmmmccc55555	chr19:2269964-2270232(+)$1	268	41	62	17.7169
%%%%%eeeee[a[ccc"""cc	chr19:18668655-18668969(+)$1	314	96	117	14.6037
eeee]dddddddd[ffffff[	chr11:32915014-32915274(+)$1	260	25	46	16.0188
bb[dddd[ccc[ffffffeee	chr22:20127688-20127958(+)$1	270	110	131	20.2641
FF}A}EEEEE:::::::gggg	chr4:174254962-174255293(-)$1	331	265	286	19.6981
c[eeeeeaccc[bboooooob	chr9:126692129-126692438(-)$1	309	183	204	17.2452
nnnnnffffff22ggggggg4	chr12:109124501-109124760(-)$1	259	171	192	14.6037
]ccc]============ccc[	chr2:47402941-47403207(-)$1	266	173	194	21.3962
b4444hhhhhhhhbb:dddd!	chr20:35491744-35491989(-)$1	245	83	104	16.2075
ff22bb]ggggggg22eeeee	chr7:148580805-148581093(-)$1	288	146	167	16.4905
FFA{EEEEE{DDDDggggggg	chr19:1652281-1652538(-)$1	257	85	106	16.1132
t==========]eeeee]a]c	chr2:47402869-47403126(-)$1	257	92	113	21.3962
mccc:eeeeennnnneeeee:	chr22:20105341-20105596(+)$1	255	92	113	15.5471
B{JJJJJJJJJJ{Affffffc	chr1:245026380-245026637(-)$1	257	5	26	19.9811
fffbb[ffffff[dddd%%%%	chr9:133455117-133455368(+)$1	251	73	94	16.8679
[eeeeennnnneeeee]dddd	chr21:46644319-46644582(+)$1	263	130	151	21.9622
d]a]ffffff]ccc]ccc:::	chr12:7036965-7037226(+)$1	261	99	120	18.0943
DDKKHHHHHHHHKKCCC{AKK	chr20:1165811-1166099(-)$1	288	119	140	22.9056
fffff4444dddd]accc]bb	chr1:1822248-1822535(-)$1	287	55	76	18.8490
pppppppggggggg:ccc[dd	chr17:76117906-76118190(-)$1	284	115	136	21.6792
DGGGGGGGKKCCC{A{FFFFF	chr10:71929879-71930149(-)$1	270	67	88	23.2830
accc!!ffffff[ffffffab	chr7:158621823-158622195(-)$1	372	118	139	23.0943
eeeee[bboooooobb22eee	chr7:151216103-151216386(-)$1	283	57	78	18.5660
dddd]eeeee]dddd:::EEE	chr17:76123793-76124093(-)$1	300	121	142	17.7169
eeeemmmmeeeee]ggggggg	chr1:29507920-29508251(-)$1	331	268	289	18.4716
iiiii####hhhhhhhh"""b	chr16:89042609-89042888(-)$1	279	6	27	18.0943
eee"""eeeee%%%%%%dddd	chr6:167369041-167369303(-)$1	262	16	37	20.9245
gggga[hhhhhhhhbb!!ddd	chr17:76122890-76123140(-)$1	250	21	42	15.8301

#DB
.(((.......))).))..).	chr14:102228449-102228766(+)$1	1	60	81	21.5849
((........((.((.(((((	chr3:9438829-9439066(-)$1	1	2	23	15.6415
.((((....)))).).))).)	chr3:128212003-128212285(+)$1	1	108	129	20.5471
).)))).)).(((((..((((	chr5:170815512-170815747(+)$1	1	81	102	20.2641
((((((..(((((((.((((.	chr7:100171280-100171537(-)$1	1	116	137	19.6981
(((((.((((((.(((.((((	chr1:150947039-150947330(-)$1	1	55	76	18.7547
((.....))).))))))).))	chr11:64073169-64073454(+)$1	1	63	84	19.1320
)((((((((((..........	chr22:20110999-20111235(+)$1	1	9	30	15.5471
)..))))).).))).).))..	chr3:41241218-41241473(+)$1	1	231	252	32.1509
........((((((.(((.((	chr12:7037365-7037609(+)$1	1	0	21	16.1132
)..)))))).))..)))))))	chr22:49981004-49981258(-)$1	1	84	105	22.3396
(....))))....).))))))	chr13:27745068-27745332(-)$1	1	93	114	18.7547
(((((((.(((((((((((((	chr2:97534834-97535126(-)$1	1	42	63	22.6226
(((((((.(.((((.....((	chr21:44495095-44495329(-)$1	1	10	31	18.9433
.).)....))).)))))).))	chr11:378205-378475(+)$1	1	77	98	18.2830
....)))))).))(((....)	chr16:1427536-1427760(-)$1	1	108	129	15.6415
(.(..((((.(((((((((((	chr6:15248583-15248817(+)$1	1	7	28	21.3962
)))..((((((.(((.((((.	chr6:167369109-167369361(-)$1	1	74	95	20.9245
)))..)).))))).)..)...	chr17:8533100-8533345(-)$1	1	137	158	18.7547
((((((((((((((.((((((	chr2:97535541-97535801(-)$1	1	45	66	18.6603
((.(...((((..........	chr2:97559879-97560169(-)$1	1	64	85	21.7735
..(((.((((..((((....)	chr4:1873233-1873512(+)$1	1	75	96	17.9056
.(.(((((((((...(((.(.	chr2:47402798-47403050(-)$1	1	16	37	21.3962
(((.((((((((((((((.((	chr22:21772144-21772396(+)$1	1	3	24	17.9056
..)))))).)))((((.((((	chr13:92000572-92000888(+)$1	1	215	236	17.9999
((....(((....))).....	chr19:2269964-2270232(+)$1	1	41	62	17.7169
.....(((((.(.(((...((	chr19:18668655-18668969(+)$1	1	96	117	14.6037
)))).))))((((.((((((.	chr11:32915014-32915274(+)$1	1	25	46	16.0188
((.((((.(((.(((((((((	chr22:20127688-20127958(+)$1	1	110	131	20.2641
)).).))))).......((((	chr4:174254962-174255293(-)$1	1	265	286	19.6981
(.(((((((((.((......)	chr9:126692129-126692438(-)$1	1	183	204	17.2452
.....))))))..))))))).	chr12:109124501-109124760(-)$1	1	171	192	14.6037
.))).))))))))))))(((.	chr2:47402941-47403207(-)$1	1	173	194	21.3962
)....)))))))))).((((.	chr20:35491744-35491989(-)$1	1	83	104	16.2075
))..)).)))))))..)))))	chr7:148580805-148581093(-)$1	1	146	167	16.4905
(((.(((((.(((((((((((	chr19:1652281-1652538(-)$1	1	85	106	16.1132
.)))))))))).))))).).)	chr2:47402869-47403126(-)$1	1	92	113	21.3962
.))).(((((.....))))).	chr22:20105341-20105596(+)$1	1	92	113	15.5471
(.((((((((((.((((((((	chr1:245026380-245026637(-)$1	1	5	26	19.9811
)))((.((((((.((((....	chr9:133455117-133455368(+)$1	1	73	94	16.8679
.(((((.....))))).))))	chr21:46644319-46644582(+)$1	1	130	151	21.9622
).).)))))).))).)))...	chr12:7036965-7037226(+)$1	1	99	120	18.0943
((..((((((((..(((.(..	chr20:1165811-1166099(-)$1	1	119	140	22.9056
)))))....)))).)))).))	chr1:1822248-1822535(-)$1	1	55	76	18.8490
.......))))))).(((.((	chr17:76117906-76118190(-)$1	1	115	136	21.6792
((((((((..(((.(.(((((	chr10:71929879-71930149(-)$1	1	67	88	23.2830
((((..((((((.((((((((	chr7:158621823-158622195(-)$1	1	118	139	23.0943
(((((.((......))..)))	chr7:151216103-151216386(-)$1	1	57	78	18.5660
)))).))))).))))...(((	chr17:76123793-76124093(-)$1	1	121	142	17.7169
((((....))))).)))))))	chr1:29507920-29508251(-)$1	1	268	289	18.4716
(((((....((((((((...(	chr16:89042609-89042888(-)$1	1	6	27	18.0943
(((...(((((......((((	chr6:167369041-167369303(-)$1	1	16	37	20.9245
(((((.((((((((((..(((	chr17:76122890-76123140(-)$1	1	21	42	15.8301

#PSSM
G : 0.58	g : 0.22	C : 0.11	c : 0.03	A : 0.01	U : 0.01	
G : 0.66	g : 0.28	c : 0.01	C : 0.01	U : 0.01	
G : 0.52	g : 0.24	U : 0.07	C : 0.05	A : 0.03	c : 0.03	a : 0.01	
c : 0.24	C : 0.22	A : 0.18	G : 0.13	U : 0.13	u : 0.03	a : 0.01	g : 0.01	
G : 0.47	g : 0.28	A : 0.15	U : 0.03	c : 0.01	a : 0.01	C : 0.01	
G : 0.58	g : 0.22	A : 0.07	c : 0.07	u : 0.01	C : 0.01	
G : 0.54	g : 0.22	A : 0.09	c : 0.05	a : 0.03	C : 0.01	U : 0.01	
G : 0.37	g : 0.20	C : 0.11	A : 0.09	c : 0.09	U : 0.07	a : 0.01	u : 0.01	
G : 0.41	g : 0.26	C : 0.16	c : 0.05	A : 0.03	U : 0.03	a : 0.01	
U : 0.33	c : 0.15	G : 0.13	A : 0.13	g : 0.09	C : 0.05	a : 0.05	u : 0.03	
G : 0.58	g : 0.33	U : 0.03	C : 0.01	A : 0.01	
G : 0.49	g : 0.20	C : 0.11	c : 0.11	U : 0.03	u : 0.01	A : 0.01	
G : 0.50	g : 0.24	U : 0.07	C : 0.05	a : 0.05	c : 0.03	A : 0.01	
G : 0.41	g : 0.28	U : 0.13	C : 0.05	A : 0.05	c : 0.05	
G : 0.39	g : 0.28	C : 0.11	A : 0.07	U : 0.07	c : 0.03	u : 0.01	
U : 0.28	G : 0.22	c : 0.15	C : 0.11	u : 0.09	g : 0.07	A : 0.03	a : 0.01	
G : 0.54	g : 0.32	A : 0.03	c : 0.03	C : 0.03	U : 0.01	
G : 0.49	g : 0.28	U : 0.09	c : 0.07	A : 0.03	C : 0.01	
G : 0.49	g : 0.28	A : 0.05	c : 0.05	C : 0.05	U : 0.03	a : 0.01	
G : 0.50	g : 0.26	C : 0.07	c : 0.07	A : 0.05	u : 0.01	
G : 0.54	g : 0.28	c : 0.05	A : 0.05	U : 0.03	u : 0.01	

#score	1016.3584905660368
#seq	53
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_UTR_m3_run1.nuc.txt

#NT
CUGCC	chr22:19710347-19710602(+)$1	255	19	24	15.0000
CUGCC	chr16:450247-450597(+)$1	350	103	108	15.0000
CUGCC	chr12:56991482-56991736(-)$1	254	43	48	15.0000
CUGCC	chr1:27633028-27633336(+)$1	308	136	141	15.0000
CUGCC	chr6:33218380-33218678(-)$1	298	84	89	15.0000
CUGCC	chr6:30692796-30693055(+)$1	259	178	183	15.0000
CUGCC	chr20:48741094-48741372(-)$1	278	22	27	15.0000
CUGCC	chr11:319631-319925(-)$1	294	117	122	15.0000
CUGCC	chr6:88411304-88411576(-)$1	272	162	167	15.0000
CUGCC	chr14:21269480-21269740(-)$1	260	34	39	15.0000
CUGCC	chr12:56636417-56636710(-)$1	293	18	23	15.0000
CUGCC	chr2:68479525-68479770(-)$1	245	234	239	15.0000
CUGCC	chr22:20941649-20941931(+)$1	282	150	155	15.0000
CUGCC	chr1:27633844-27634181(+)$1	337	104	109	15.0000
CUGCC	chr4:119738329-119738602(-)$1	273	213	218	15.0000
CUGCC	chr7:140624355-140624612(-)$1	257	230	235	15.0000
CUGCC	chr11:65119170-65119465(+)$1	295	190	195	15.0000
CUGCC	chr9:130213506-130213785(-)$1	279	66	71	15.0000
CUGCC	chr21:45746720-45747055(+)$1	335	156	161	15.0000
CUGCC	chr17:73842081-73842322(-)$1	241	150	155	15.0000
CUGCC	chr17:20905224-20905486(-)$1	262	76	81	15.0000
CUGCC	chr17:76170541-76170813(-)$1	272	3	8	15.0000
CUGCC	chr18:19321302-19321563(+)$1	261	128	133	15.0000
CUGCC	chr17:47788612-47788888(-)$1	276	52	57	15.0000
CUGCC	chr17:40947118-40947474(+)$1	356	207	212	15.0000
CUGCC	chr2:74588327-74588590(-)$1	263	16	21	15.0000
cugcc	chr17:8063728-8064048(-)$1	320	312	317	15.0000
CUGCC	chr20:35411842-35412128(-)$1	286	15	20	15.0000
CUGCC	chr4:103747909-103748140(-)$1	231	74	79	15.0000
CUGCC	chr17:75494742-75495016(+)$1	274	6	11	15.0000
CUGCC	chr19:2732581-2732895(-)$1	314	165	170	15.0000
CUGCC	chr16:67904748-67905017(+)$1	269	199	204	15.0000
cugcc	chr17:57697241-57697555(+)$1	314	104	109	15.0000
CUGCC	chr7:100212768-100213041(+)$1	273	142	147	15.0000
CUGCC	chr11:64789262-64789513(+)$1	251	5	10	15.0000
CUGCC	chr12:49523206-49523491(-)$1	285	54	59	15.0000
CUGCC	chr12:54635339-54635611(-)$1	272	124	129	15.0000
CUGCC	chr17:79890289-79890542(-)$1	253	132	137	15.0000
CUGCC	chr1:156109147-156109427(+)$1	280	32	37	15.0000
CUGCC	chr9:134373134-134373398(+)$1	264	61	66	15.0000
CUGCC	chr1:228682049-228682342(+)$1	293	187	192	15.0000
CUGCC	chr8:101931053-101931372(-)$1	319	167	172	15.0000
CUGCC	chr7:150730620-150730939(+)$1	319	181	186	15.0000
CUGCC	chr22:21804166-21804411(+)$1	245	19	24	15.0000
CUGCC	chr1:6651627-6651945(-)$1	318	121	126	15.0000
CUGCC	chr17:79668597-79668949(+)$1	352	115	120	15.0000
CUGCC	chr15:72491301-72491561(-)$1	260	235	240	15.0000
cugcc	chr3:33184376-33184676(+)$1	300	14	19	15.0000
CUGCC	chr1:2125437-2125700(-)$1	263	46	51	15.0000
CUGCC	chr19:11561390-11561711(+)$1	321	127	132	15.0000
cugcc	chr3:9860541-9860801(+)$1	260	129	134	15.0000
CUGCC	chr17:7215439-7215691(+)$1	252	150	155	15.0000
CUGCC	chr3:183889111-183889351(+)$1	240	20	25	15.0000
CUGCC	chr12:6857147-6857419(-)$1	272	148	153	15.0000
CUGCC	chr22:19163207-19163487(-)$1	280	205	210	15.0000
CUGCC	chr15:89442132-89442440(-)$1	308	116	121	15.0000
CUGCC	chr17:79801187-79801460(-)$1	273	158	163	15.0000
CUGCC	chr11:61664947-61665217(-)$1	270	191	196	15.0000
CUGCC	chr1:234745073-234745346(-)$1	273	166	171	15.0000
CUGCC	chr1:2240918-2241234(+)$1	316	106	111	15.0000
CUGCC	chr19:18642514-18642798(-)$1	284	127	132	15.0000
CUGCC	chr17:46689861-46690163(-)$1	302	25	30	15.0000
cugcc	chr19:56173205-56173438(+)$1	233	107	112	15.0000

#otherMatches

#Struct PSSM
ssbb]	chr17:46005449-46005756(+)$1	307	109	114	15.0000
""bbo	chr22:19710347-19710602(+)$1	255	19	24	15.0000
ddd++	chr16:450247-450597(+)$1	350	103	108	15.0000
IIIII	chr12:56991482-56991736(-)$1	254	43	48	15.0000
[bbcc	chr1:27633028-27633336(+)$1	308	136	141	15.0000
dmmmm	chr6:33218380-33218678(-)$1	298	84	89	15.0000
qqqqq	chr6:30692796-30693055(+)$1	259	178	183	15.0000
iiiii	chr20:48741094-48741372(-)$1	278	22	27	15.0000
bbccc	chr11:319631-319925(-)$1	294	117	122	15.0000
FFFFF	chr6:88411304-88411576(-)$1	272	162	167	15.0000
f^^^^	chr14:21269480-21269740(-)$1	260	34	39	15.0000
KCCCB	chr12:56636417-56636710(-)$1	293	18	23	15.0000
:::::	chr2:68479525-68479770(-)$1	245	234	239	15.0000
bdddd	chr22:20941649-20941931(+)$1	282	150	155	15.0000
::ccc	chr1:27633844-27634181(+)$1	337	104	109	15.0000
]ccc:	chr4:119738329-119738602(-)$1	273	213	218	15.0000
eee::	chr7:140624355-140624612(-)$1	257	230	235	15.0000
[dddd	chr11:65119170-65119465(+)$1	295	190	195	15.0000
::ccc	chr9:130213506-130213785(-)$1	279	66	71	15.0000
FFF::	chr21:45746720-45747055(+)$1	335	156	161	15.0000
ggg((	chr17:73842081-73842322(-)$1	241	150	155	15.0000
HHHHH	chr17:20905224-20905486(-)$1	262	76	81	15.0000
:EEEE	chr17:76170541-76170813(-)$1	272	3	8	15.0000
HHHHH	chr18:19321302-19321563(+)$1	261	128	133	15.0000
ccc22	chr17:47788612-47788888(-)$1	276	52	57	15.0000
dddbb	chr17:40947118-40947474(+)$1	356	207	212	15.0000
[cccn	chr2:74588327-74588590(-)$1	263	16	21	15.0000
ddd::	chr17:8063728-8064048(-)$1	320	312	317	15.0000
!!bb!	chr20:35411842-35412128(-)$1	286	15	20	15.0000
ssddd	chr4:103747909-103748140(-)$1	231	74	79	15.0000
:::::	chr17:75494742-75495016(+)$1	274	6	11	15.0000
E}DDD	chr19:2732581-2732895(-)$1	314	165	170	15.0000
ee]ff	chr16:67904748-67905017(+)$1	269	199	204	15.0000
EEELL	chr17:57697241-57697555(+)$1	314	104	109	15.0000
:::::	chr7:100212768-100213041(+)$1	273	142	147	15.0000
FFFFF	chr11:64789262-64789513(+)$1	251	5	10	15.0000
ddfff	chr12:49523206-49523491(-)$1	285	54	59	15.0000
>>ccc	chr12:54635339-54635611(-)$1	272	124	129	15.0000
c]a]c	chr17:79890289-79890542(-)$1	253	132	137	15.0000
++eee	chr1:156109147-156109427(+)$1	280	32	37	15.0000
gg:::	chr9:134373134-134373398(+)$1	264	61	66	15.0000
ddddm	chr1:228682049-228682342(+)$1	293	187	192	15.0000
YYBB@	chr8:101931053-101931372(-)$1	319	167	172	15.0000
eee]d	chr7:150730620-150730939(+)$1	319	181	186	15.0000
oobb4	chr22:21804166-21804411(+)$1	245	19	24	15.0000
C{FFF	chr1:6651627-6651945(-)$1	318	121	126	15.0000
@@@@@	chr17:79668597-79668949(+)$1	352	115	120	15.0000
DDDDA	chr15:72491301-72491561(-)$1	260	235	240	15.0000
fff::	chr3:33184376-33184676(+)$1	300	14	19	15.0000
BB{GG	chr1:2125437-2125700(-)$1	263	46	51	15.0000
dddd2	chr19:11561390-11561711(+)$1	321	127	132	15.0000
eeee:	chr3:9860541-9860801(+)$1	260	129	134	15.0000
cc[cc	chr17:7215439-7215691(+)$1	252	150	155	15.0000
::::c	chr3:183889111-183889351(+)$1	240	20	25	15.0000
C::::	chr12:6857147-6857419(-)$1	272	148	153	15.0000
wwwww	chr22:19163207-19163487(-)$1	280	205	210	15.0000
ffffd	chr15:89442132-89442440(-)$1	308	116	121	15.0000
ee(((	chr17:79801187-79801460(-)$1	273	158	163	15.0000
ndddd	chr11:61664947-61665217(-)$1	270	191	196	15.0000
eeeee	chr1:234745073-234745346(-)$1	273	166	171	15.0000
ffGGG	chr1:2240918-2241234(+)$1	316	106	111	15.0000
e]ddd	chr19:18642514-18642798(-)$1	284	127	132	15.0000
::EEE	chr17:46689861-46690163(-)$1	302	25	30	15.0000
:::::	chr19:56173205-56173438(+)$1	233	107	112	15.0000

#DB
..)).	chr17:46005449-46005756(+)$1	1	109	114	15.0000
..((.	chr22:19710347-19710602(+)$1	1	19	24	15.0000
(((..	chr16:450247-450597(+)$1	1	103	108	15.0000
(((((	chr12:56991482-56991736(-)$1	1	43	48	15.0000
.((((	chr1:27633028-27633336(+)$1	1	136	141	15.0000
(....	chr6:33218380-33218678(-)$1	1	84	89	15.0000
.....	chr6:30692796-30693055(+)$1	1	178	183	15.0000
(((((	chr20:48741094-48741372(-)$1	1	22	27	15.0000
)))))	chr11:319631-319925(-)$1	1	117	122	15.0000
)))))	chr6:88411304-88411576(-)$1	1	162	167	15.0000
(....	chr14:21269480-21269740(-)$1	1	34	39	15.0000
.((((	chr12:56636417-56636710(-)$1	1	18	23	15.0000
.....	chr2:68479525-68479770(-)$1	1	234	239	15.0000
(((((	chr22:20941649-20941931(+)$1	1	150	155	15.0000
..(((	chr1:27633844-27634181(+)$1	1	104	109	15.0000
.))).	chr4:119738329-119738602(-)$1	1	213	218	15.0000
)))..	chr7:140624355-140624612(-)$1	1	230	235	15.0000
.((((	chr11:65119170-65119465(+)$1	1	190	195	15.0000
..(((	chr9:130213506-130213785(-)$1	1	66	71	15.0000
(((..	chr21:45746720-45747055(+)$1	1	156	161	15.0000
(((..	chr17:73842081-73842322(-)$1	1	150	155	15.0000
(((((	chr17:20905224-20905486(-)$1	1	76	81	15.0000
.((((	chr17:76170541-76170813(-)$1	1	3	8	15.0000
(((((	chr18:19321302-19321563(+)$1	1	128	133	15.0000
)))..	chr17:47788612-47788888(-)$1	1	52	57	15.0000
(((((	chr17:40947118-40947474(+)$1	1	207	212	15.0000
.(((.	chr2:74588327-74588590(-)$1	1	16	21	15.0000
)))..	chr17:8063728-8064048(-)$1	1	312	317	15.0000
..((.	chr20:35411842-35412128(-)$1	1	15	20	15.0000
..)))	chr4:103747909-103748140(-)$1	1	74	79	15.0000
.....	chr17:75494742-75495016(+)$1	1	6	11	15.0000
).)))	chr19:2732581-2732895(-)$1	1	165	170	15.0000
)).))	chr16:67904748-67905017(+)$1	1	199	204	15.0000
(((..	chr17:57697241-57697555(+)$1	1	104	109	15.0000
.....	chr7:100212768-100213041(+)$1	1	142	147	15.0000
(((((	chr11:64789262-64789513(+)$1	1	5	10	15.0000
)))))	chr12:49523206-49523491(-)$1	1	54	59	15.0000
..)))	chr12:54635339-54635611(-)$1	1	124	129	15.0000
).).)	chr17:79890289-79890542(-)$1	1	132	137	15.0000
..(((	chr1:156109147-156109427(+)$1	1	32	37	15.0000
))...	chr9:134373134-134373398(+)$1	1	61	66	15.0000
((((.	chr1:228682049-228682342(+)$1	1	187	192	15.0000
..)).	chr8:101931053-101931372(-)$1	1	167	172	15.0000
))).)	chr7:150730620-150730939(+)$1	1	181	186	15.0000
..)).	chr22:21804166-21804411(+)$1	1	19	24	15.0000
(.(((	chr1:6651627-6651945(-)$1	1	121	126	15.0000
.....	chr17:79668597-79668949(+)$1	1	115	120	15.0000
)))))	chr15:72491301-72491561(-)$1	1	235	240	15.0000
)))..	chr3:33184376-33184676(+)$1	1	14	19	15.0000
((.((	chr1:2125437-2125700(-)$1	1	46	51	15.0000
)))).	chr19:11561390-11561711(+)$1	1	127	132	15.0000
)))).	chr3:9860541-9860801(+)$1	1	129	134	15.0000
((.((	chr17:7215439-7215691(+)$1	1	150	155	15.0000
....(	chr3:183889111-183889351(+)$1	1	20	25	15.0000
(....	chr12:6857147-6857419(-)$1	1	148	153	15.0000
.....	chr22:19163207-19163487(-)$1	1	205	210	15.0000
)))))	chr15:89442132-89442440(-)$1	1	116	121	15.0000
((...	chr17:79801187-79801460(-)$1	1	158	163	15.0000
.))))	chr11:61664947-61665217(-)$1	1	191	196	15.0000
)))))	chr1:234745073-234745346(-)$1	1	166	171	15.0000
))(((	chr1:2240918-2241234(+)$1	1	106	111	15.0000
).)))	chr19:18642514-18642798(-)$1	1	127	132	15.0000
..(((	chr17:46689861-46690163(-)$1	1	25	30	15.0000
.....	chr19:56173205-56173438(+)$1	1	107	112	15.0000

#PSSM
C : 0.92	c : 0.07	
U : 0.92	u : 0.07	
G : 0.92	g : 0.07	
C : 0.92	c : 0.07	
C : 0.92	c : 0.07	

#score	960.0
#seq	64
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_UTR_m3_run1.nuc.txt

#NT
UCUCUUUUC	chr11:129990558-129990813(+)$1	255	30	39	14.5471
uucauuuuc	chr14:24614926-24615199(-)$1	273	83	92	14.7358
UUUCAUUUC	chr11:10828732-10828966(-)$1	234	41	50	13.8867
GCUUUUUUC	chr20:61569041-61569320(-)$1	279	179	188	12.9433
UCUUCUUUC	chr2:74750006-74750245(-)$1	239	75	84	13.2264
UAUGUUUUC	chr5:75896561-75896849(+)$1	288	60	69	13.8867
UUUGCUUUC	chr17:61869708-61869982(+)$1	274	44	53	14.0754
UCCUUUUUC	chr22:44328670-44328963(+)$1	293	64	73	13.9811
UUUUUUUUU	chr2:70456305-70456551(-)$1	246	87	96	15.1132
UUUUCUUUC	chr17:34867032-34867379(-)$1	347	70	79	16.3396
UCUUUUUUC	chr14:39748439-39748646(+)$1	207	129	138	16.6226
UUCUAUUUC	chr2:61408354-61408567(+)$1	213	200	209	13.3207
CAUUUUUUC	chr3:52723036-52723282(+)$1	246	36	45	12.5660
UCAUUUUUC	chr17:38798599-38798923(-)$1	324	37	46	13.4150
UUUUGUUUC	chr1:8568596-8568835(-)$1	239	183	192	16.0566
GUUUUUUUC	chr16:8906756-8907028(+)$1	272	19	28	16.0566
UUUUUUUUC	chr18:48581061-48581473(+)$1	412	30	39	19.7358
UGUAUUUUC	chr2:207025972-207026199(+)$1	227	34	43	13.6037
UUUUUUUUC	chr19:1206719-1207050(+)$1	331	79	88	19.7358
UUUCUGUUC	chr19:9530642-9530946(-)$1	304	216	225	13.0377
UUUUUUUGC	chr3:37407478-37407803(+)$1	325	46	55	14.9245
UCCUUUUUC	chr16:58633254-58633515(-)$1	261	43	52	13.9811
UUUAUUUUC	chr1:35641917-35642176(-)$1	259	230	239	17.3773
UUGUUUUUC	chr1:6257695-6257917(-)$1	222	45	54	16.9999
UUGCUUUUC	chr2:62934016-62934309(+)$1	293	4	13	14.9245
UUUUUUUUC	chr2:131883222-131883491(+)$1	269	91	100	19.7358
UUGUUUUUC	chr1:41608596-41608878(-)$1	282	81	90	16.9999
UUUGGUUUC	chr3:184102300-184102580(+)$1	280	209	218	13.7924
GUCUUUUUC	chr8:22884671-22884904(-)$1	233	91	100	13.4150
UUUGUUUUC	chr14:31592109-31592349(-)$1	240	84	93	17.4716
UUUAUUUUC	chr2:61720932-61721318(-)$1	386	2	11	17.3773
CUGUUUUUC	chr12:76443456-76443666(-)$1	210	84	93	13.4150
UUUUUUUUU	chr1:21106205-21106501(-)$1	296	282	291	15.1132
UUUAUUUUC	chrX:70504146-70504403(+)$1	257	38	47	17.3773
UUAUUUUUC	chr12:56568334-56568651(-)$1	317	62	71	16.5283
UUGUUUUUC	chr20:61914092-61914325(+)$1	233	62	71	16.9999
UUCUCUUUC	chr17:38185904-38186155(-)$1	251	186	195	13.6981
CUUUCUUUC	chr12:124093161-124093477(+)$1	316	51	60	12.7547
UCUUUUUUC	chr14:39748446-39748658(+)$1	212	122	131	16.6226
UUUCUUUUC	chr2:61597357-61597619(-)$1	262	59	68	17.6603
UUUGUUUUC	chr14:31592019-31592306(-)$1	287	41	50	17.4716
CUUUGUUUC	chr3:186503887-186504118(+)$1	231	50	59	12.4716
UUCUUGUUC	chr14:74762970-74763249(-)$1	279	32	41	12.4716
UUUGUUUUC	chr12:26633974-26634223(-)$1	249	37	46	17.4716
UUGCUUUUC	chr1:32792534-32792800(+)$1	266	228	237	14.9245
CUUCUUUUC	chr6:128718678-128718926(-)$1	248	78	87	14.0754
UUGUUUUUC	chr11:62400376-62400599(-)$1	223	11	20	16.9999
UAUUUUUUC	chr1:97189018-97189251(+)$1	233	85	94	16.1509
uucauuuuc	chr14:24614843-24615126(-)$1	283	10	19	14.7358
AUUCUUUUC	chr17:56083077-56083365(-)$1	288	219	228	13.6981
GUUGUUUUC	chr7:155437321-155437543(+)$1	222	66	75	13.7924
UUUUCUUUC	chr15:44085081-44085319(+)$1	238	77	86	16.3396

#otherMatches

#Struct PSSM
FKKBB{CCC	chr12:76446769-76446990(-)$1	221	79	88	17.6603
lleeeeebb	chr11:129990558-129990813(+)$1	255	30	39	14.5471
'eeeeefff	chr14:24614926-24615199(-)$1	273	83	92	14.7358
uuuuuuuuu	chr11:10828732-10828966(-)$1	234	41	50	13.8867
=========	chr20:61569041-61569320(-)$1	279	179	188	12.9433
]ccc88888	chr2:74750006-74750245(-)$1	239	75	84	13.2264
dd]gggggg	chr5:75896561-75896849(+)$1	288	60	69	13.8867
DD{DDDDDD	chr17:61869708-61869982(+)$1	274	44	53	14.0754
cceeeeett	chr22:44328670-44328963(+)$1	293	64	73	13.9811
ddd55555e	chr2:70456305-70456551(-)$1	246	87	96	15.1132
:::::::::	chr17:34867032-34867379(-)$1	347	70	79	16.3396
:::::::::	chr14:39748439-39748646(+)$1	207	129	138	16.6226
4hhhhhhhh	chr2:61408354-61408567(+)$1	213	200	209	13.3207
eeeee"""d	chr3:52723036-52723282(+)$1	246	36	45	12.5660
::::::::H	chr17:38798599-38798923(-)$1	324	37	46	13.4150
rrrrrrrrg	chr1:8568596-8568835(-)$1	239	183	192	16.0566
qffffffee	chr16:8906756-8907028(+)$1	272	19	28	16.0566
:::::::dd	chr18:48581061-48581473(+)$1	412	30	39	19.7358
33dddd22e	chr2:207025972-207026199(+)$1	227	34	43	13.6037
:::::====	chr19:1206719-1207050(+)$1	331	79	88	19.7358
b22ccc]dd	chr19:9530642-9530946(-)$1	304	216	225	13.0377
^^^^^^^^^	chr3:37407478-37407803(+)$1	325	46	55	14.9245
{BBKKJJJJ	chr16:58633254-58633515(-)$1	261	43	52	13.9811
FFYYFFFFF	chr1:35641917-35642176(-)$1	259	230	239	17.3773
wwwwwwwww	chr1:6257695-6257917(-)$1	222	45	54	16.9999
KBBEEEEE:	chr2:62934016-62934309(+)$1	293	4	13	14.9245
h========	chr2:131883222-131883491(+)$1	269	91	100	19.7358
EEEEE{FFF	chr1:41608596-41608878(-)$1	282	81	90	16.9999
ee!!ddddm	chr3:184102300-184102580(+)$1	280	209	218	13.7924
OCCC{EEEE	chr8:22884671-22884904(-)$1	233	91	100	13.4150
"""gggggg	chr14:31592109-31592349(-)$1	240	84	93	17.4716
:::::::::	chr2:61720932-61721318(-)$1	386	2	11	17.3773
dd[dddd[f	chr12:76443456-76443666(-)$1	210	84	93	13.4150
JJJJJJJJJ	chr1:21106205-21106501(-)$1	296	282	291	15.1132
NNNNJJJJJ	chrX:70504146-70504403(+)$1	257	38	47	17.3773
^^^^^^^^h	chr12:56568334-56568651(-)$1	317	62	71	16.5283
%bbnnnnnb	chr20:61914092-61914325(+)$1	233	62	71	16.9999
IIIIIIIII	chr17:38185904-38186155(-)$1	251	186	195	13.6981
qqqqaccce	chr12:124093161-124093477(+)$1	316	51	60	12.7547
:::::::::	chr14:39748446-39748658(+)$1	212	122	131	16.6226
hhhhh[bbe	chr2:61597357-61597619(-)$1	262	59	68	17.6603
JJJJJJJJJ	chr14:31592019-31592306(-)$1	287	41	50	17.4716
ggggeeeee	chr3:186503887-186504118(+)$1	231	50	59	12.4716
rrrrrrccc	chr14:74762970-74763249(-)$1	279	32	41	12.4716
eeeee::::	chr12:26633974-26634223(-)$1	249	37	46	17.4716
g[bb"""bb	chr1:32792534-32792800(+)$1	266	228	237	14.9245
d[bb$$$$$	chr6:128718678-128718926(-)$1	248	78	87	14.0754
IIIPPPPPP	chr11:62400376-62400599(-)$1	223	11	20	16.9999
fffff]fff	chr1:97189018-97189251(+)$1	233	85	94	16.1509
rrrrrrrrr	chr14:24614843-24615126(-)$1	283	10	19	14.7358
ffff!!ddd	chr17:56083077-56083365(-)$1	288	219	228	13.6981
:::::::::	chr7:155437321-155437543(+)$1	222	66	75	13.7924
JJJJJJJJJ	chr15:44085081-44085319(+)$1	238	77	86	16.3396

#DB
(..((.(((	chr12:76446769-76446990(-)$1	1	79	88	17.6603
..)))))))	chr11:129990558-129990813(+)$1	1	30	39	14.5471
.((((((((	chr14:24614926-24615199(-)$1	1	83	92	14.7358
.........	chr11:10828732-10828966(-)$1	1	41	50	13.8867
(((((((((	chr20:61569041-61569320(-)$1	1	179	188	12.9433
.))).....	chr2:74750006-74750245(-)$1	1	75	84	13.2264
)).))))))	chr5:75896561-75896849(+)$1	1	60	69	13.8867
((.((((((	chr17:61869708-61869982(+)$1	1	44	53	14.0754
(((((((..	chr22:44328670-44328963(+)$1	1	64	73	13.9811
))).....)	chr2:70456305-70456551(-)$1	1	87	96	15.1132
.........	chr17:34867032-34867379(-)$1	1	70	79	16.3396
.........	chr14:39748439-39748646(+)$1	1	129	138	16.6226
.))))))))	chr2:61408354-61408567(+)$1	1	200	209	13.3207
(((((...(	chr3:52723036-52723282(+)$1	1	36	45	12.5660
........(	chr17:38798599-38798923(-)$1	1	37	46	13.4150
........)	chr1:8568596-8568835(-)$1	1	183	192	16.0566
.))))))))	chr16:8906756-8907028(+)$1	1	19	28	16.0566
.......((	chr18:48581061-48581473(+)$1	1	30	39	19.7358
..))))..)	chr2:207025972-207026199(+)$1	1	34	43	13.6037
.....((((	chr19:1206719-1207050(+)$1	1	79	88	19.7358
)..))).))	chr19:9530642-9530946(-)$1	1	216	225	13.0377
.........	chr3:37407478-37407803(+)$1	1	46	55	14.9245
.((..((((	chr16:58633254-58633515(-)$1	1	43	52	13.9811
))..)))))	chr1:35641917-35642176(-)$1	1	230	239	17.3773
.........	chr1:6257695-6257917(-)$1	1	45	54	16.9999
.(((((((.	chr2:62934016-62934309(+)$1	1	4	13	14.9245
)((((((((	chr2:131883222-131883491(+)$1	1	91	100	19.7358
(((((.(((	chr1:41608596-41608878(-)$1	1	81	90	16.9999
((..((((.	chr3:184102300-184102580(+)$1	1	209	218	13.7924
.(((.((((	chr8:22884671-22884904(-)$1	1	91	100	13.4150
...((((((	chr14:31592109-31592349(-)$1	1	84	93	17.4716
.........	chr2:61720932-61721318(-)$1	1	2	11	17.3773
((.((((.(	chr12:76443456-76443666(-)$1	1	84	93	13.4150
)))))))))	chr1:21106205-21106501(-)$1	1	282	291	15.1132
....(((((	chrX:70504146-70504403(+)$1	1	38	47	17.3773
........)	chr12:56568334-56568651(-)$1	1	62	71	16.5283
.((.....)	chr20:61914092-61914325(+)$1	1	62	71	16.9999
)))))))))	chr17:38185904-38186155(-)$1	1	186	195	13.6981
....)))))	chr12:124093161-124093477(+)$1	1	51	60	12.7547
.........	chr14:39748446-39748658(+)$1	1	122	131	16.6226
(((((.(((	chr2:61597357-61597619(-)$1	1	59	68	17.6603
(((((((((	chr14:31592019-31592306(-)$1	1	41	50	17.4716
))))(((((	chr3:186503887-186504118(+)$1	1	50	59	12.4716
......)))	chr14:74762970-74763249(-)$1	1	32	41	12.4716
)))))....	chr12:26633974-26634223(-)$1	1	37	46	17.4716
(.((...((	chr1:32792534-32792800(+)$1	1	228	237	14.9245
(.((.....	chr6:128718678-128718926(-)$1	1	78	87	14.0754
(((......	chr11:62400376-62400599(-)$1	1	11	20	16.9999
))))).)))	chr1:97189018-97189251(+)$1	1	85	94	16.1509
.........	chr14:24614843-24615126(-)$1	1	10	19	14.7358
((((..(((	chr17:56083077-56083365(-)$1	1	219	228	13.6981
.........	chr7:155437321-155437543(+)$1	1	66	75	13.7924
(((((((((	chr15:44085081-44085319(+)$1	1	77	86	16.3396

#PSSM
U : 0.77	C : 0.09	G : 0.07	u : 0.03	A : 0.01	
U : 0.73	C : 0.15	A : 0.05	u : 0.03	G : 0.01	
U : 0.67	G : 0.13	C : 0.11	c : 0.03	A : 0.03	
U : 0.58	C : 0.16	G : 0.13	A : 0.07	a : 0.03	
U : 0.75	C : 0.11	G : 0.05	u : 0.03	A : 0.03	
U : 0.92	u : 0.03	G : 0.03	
U : 0.96	u : 0.03	
U : 0.94	u : 0.03	G : 0.01	
C : 0.92	c : 0.03	U : 0.03	

#score	812.320754716981
#seq	53
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_UTR_m3_run1.nuc.txt

#NT
UUUCA	chr17:34171000-34171235(+)$1	235	109	114	15.0000
UUUCA	chr11:3023120-3023367(-)$1	247	239	244	15.0000
UUUCA	chr18:9254585-9254877(+)$1	292	64	69	15.0000
UUUCA	chr1:165723364-165723613(-)$1	249	235	240	15.0000
UUUCA	chr11:11964381-11964703(+)$1	322	225	230	15.0000
UUUCA	chr15:44063202-44063416(+)$1	214	94	99	15.0000
UUUCA	chr12:46357788-46358061(-)$1	273	178	183	15.0000
UUUCA	chr17:62498186-62498441(-)$1	255	58	63	15.0000
UUUCA	chr2:187368820-187369039(+)$1	219	92	97	15.0000
UUUCA	chr22:22890177-22890430(-)$1	253	31	36	15.0000
UUUCA	chr5:10264737-10265057(+)$1	320	24	29	15.0000
UUUCA	chr3:169700848-169701142(+)$1	294	92	97	15.0000
UUUCA	chr9:127998544-127998798(-)$1	254	80	85	15.0000
UUUCA	chr16:8997030-8997358(-)$1	328	9	14	15.0000
UUUCA	chr3:167727895-167728134(-)$1	239	118	123	15.0000
UUUCA	chr12:122995555-122995760(-)$1	205	113	118	15.0000
UUUCA	chr10:17279196-17279548(+)$1	352	148	153	15.0000

#otherMatches

#Struct PSSM
fff]d	chr3:180665551-180665818(+)$1	267	247	252	15.0000
666ee	chr17:34171000-34171235(+)$1	235	109	114	15.0000
JJJJJ	chr11:3023120-3023367(-)$1	247	239	244	15.0000
hhhhh	chr18:9254585-9254877(+)$1	292	64	69	15.0000
EEEEE	chr1:165723364-165723613(-)$1	249	235	240	15.0000
hhhh:	chr11:11964381-11964703(+)$1	322	225	230	15.0000
!bbee	chr15:44063202-44063416(+)$1	214	94	99	15.0000
ggggg	chr12:46357788-46358061(-)$1	273	178	183	15.0000
ggg::	chr17:62498186-62498441(-)$1	255	58	63	15.0000
eeeee	chr2:187368820-187369039(+)$1	219	92	97	15.0000
EEEE{	chr22:22890177-22890430(-)$1	253	31	36	15.0000
JJJJJ	chr5:10264737-10265057(+)$1	320	24	29	15.0000
FFFF:	chr3:169700848-169701142(+)$1	294	92	97	15.0000
f5555	chr9:127998544-127998798(-)$1	254	80	85	15.0000
::DDD	chr16:8997030-8997358(-)$1	328	9	14	15.0000
ff555	chr3:167727895-167728134(-)$1	239	118	123	15.0000
===::	chr12:122995555-122995760(-)$1	205	113	118	15.0000
qqqqq	chr10:17279196-17279548(+)$1	352	148	153	15.0000

#DB
))).)	chr3:180665551-180665818(+)$1	1	247	252	15.0000
...))	chr17:34171000-34171235(+)$1	1	109	114	15.0000
)))))	chr11:3023120-3023367(-)$1	1	239	244	15.0000
)))))	chr18:9254585-9254877(+)$1	1	64	69	15.0000
)))))	chr1:165723364-165723613(-)$1	1	235	240	15.0000
)))).	chr11:11964381-11964703(+)$1	1	225	230	15.0000
.((((	chr15:44063202-44063416(+)$1	1	94	99	15.0000
)))))	chr12:46357788-46358061(-)$1	1	178	183	15.0000
)))..	chr17:62498186-62498441(-)$1	1	58	63	15.0000
(((((	chr2:187368820-187369039(+)$1	1	92	97	15.0000
((((.	chr22:22890177-22890430(-)$1	1	31	36	15.0000
(((((	chr5:10264737-10265057(+)$1	1	24	29	15.0000
((((.	chr3:169700848-169701142(+)$1	1	92	97	15.0000
)....	chr9:127998544-127998798(-)$1	1	80	85	15.0000
..(((	chr16:8997030-8997358(-)$1	1	9	14	15.0000
))...	chr3:167727895-167728134(-)$1	1	118	123	15.0000
)))..	chr12:122995555-122995760(-)$1	1	113	118	15.0000
.....	chr10:17279196-17279548(+)$1	1	148	153	15.0000

#PSSM
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	

#score	270.00000000000006
#seq	18
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_CDS_m1_run1.nuc.txt

#NT
AAAGUGAA	chr11:62293662-62293889(-)$1	227	158	166	15.5833
AAAAAGAA	chr2:190339931-190340257(+)$1	326	45	53	16.7500
AAACUGAA	chr1:165723364-165723613(-)$1	249	116	124	15.5000
AAAAUAAA	chr11:62293185-62293427(-)$1	242	80	88	15.4166
AAGAUGAA	chr21:40571099-40571412(-)$1	313	106	114	15.4166
AAAAUGAA	chr11:62284844-62285115(-)$1	271	204	212	19.6666
AGAAUGAA	chr5:10264737-10265057(+)$1	320	151	159	15.4166
AAAAGGAA	chr4:68358489-68358789(-)$1	300	121	129	16.3333
CAAAUGAA	chr11:11964381-11964703(+)$1	322	119	127	15.2500
AAAAAGAA	chr2:187368820-187369039(+)$1	219	64	72	16.7500
AAAAUGAA	chr1:214816305-214816544(+)$1	239	189	197	19.6666
ACAAUGAA	chrM:13266-13496(+)$1	230	122	130	15.5000
GAAAUGAA	chr1:220195597-220195855(-)$1	258	24	32	15.2500
aaaaagaa	chr21:34921813-34922083(+)$1	270	72	80	16.7500
AAAAUGGA	chr2:55771958-55772236(+)$1	278	205	213	15.0833
AAUAUGAA	chr4:68383826-68384144(-)$1	318	192	200	15.2500
AAGAUGAA	chr11:62298293-62298533(-)$1	240	26	34	15.4166
AAAAUAAA	chr10:70098796-70099029(+)$1	233	189	197	15.4166
AAAAGGAA	chr8:53569110-53569406(-)$1	296	70	78	16.3333
AAACUGAA	chr5:70806029-70806277(+)$1	248	5	13	15.5000
AAAGUGAA	chr11:62291603-62291812(-)$1	209	112	120	15.5833
AAAAGGAA	chr12:122992666-122992913(-)$1	247	113	121	16.3333
AAAAUGAA	chr14:61278600-61278930(+)$1	330	153	161	19.6666
AAAAUCAA	chr6:87970248-87970555(+)$1	307	25	33	15.1666
AAAAAGAA	chr1:171526286-171526511(+)$1	225	101	109	16.7500
AAAAUAAA	chr7:91623834-91624063(+)$1	229	67	75	15.4166
AAAAGGAA	chr18:9254585-9254877(+)$1	292	49	57	16.3333
AAAAUGAA	chr7:91708343-91708627(+)$1	284	62	70	19.6666
AAAAUAAA	chr12:46320163-46320474(-)$1	311	69	77	15.4166
AAAUUGAA	chr11:62294319-62294593(-)$1	274	7	15	15.5833
AAAAAGAA	chr12:6692404-6692644(-)$1	240	228	236	16.7500
ACAAUGAA	chrM:13255-13466(+)$1	211	133	141	15.5000
AAAAUGAA	chr11:62284793-62285044(-)$1	251	133	141	19.6666
AAAAAGAA	chr7:91631594-91631847(+)$1	253	92	100	16.7500
AACAUGAA	chr17:29195250-29195531(+)$1	281	171	179	15.3333
AAAUUGAA	chr7:91643462-91643696(+)$1	234	64	72	15.5833
UAAAUGAA	chr7:158485905-158486185(-)$1	280	21	29	15.1666
AAAAAGAA	chr7:91624922-91625176(+)$1	254	126	134	16.7500
AAAAUGAC	chr4:13605609-13605939(-)$1	330	261	269	14.9166
AGAAUGAA	chr12:6687155-6687403(-)$1	248	118	126	15.4166
ACAAUGAA	chr20:32681408-32681637(-)$1	229	23	31	15.5000
AAAAUGAA	chr1:220152740-220153016(-)$1	276	26	34	19.6666
AACAUGAA	chr14:56107746-56108026(+)$1	280	145	153	15.3333
AUAAUGAA	chr13:98667721-98667996(+)$1	275	93	101	15.4166
AAAAUGAG	chr16:8997030-8997358(-)$1	328	0	8	14.9166
AAAAUGAA	chr1:39800589-39800871(+)$1	282	24	32	19.6666
AAGAUGAA	chr11:3023120-3023367(-)$1	247	99	107	15.4166
AAAUUGAA	chr8:30938619-30938886(+)$1	267	67	75	15.5833
AAAAUGCA	chr17:65900716-65900974(+)$1	258	24	32	15.1666
AAAAGGAA	chr12:122995555-122995760(-)$1	205	60	68	16.3333
AAAAAGAA	chr7:77378758-77379101(+)$1	343	41	49	16.7500
CAAAUGAA	chr17:62498186-62498441(-)$1	255	172	180	15.2500
AAAAUGAA	chr1:22033182-22033428(-)$1	246	85	93	19.6666
AAAGUGAA	chr11:62288506-62288797(-)$1	291	100	108	15.5833
AAAAUGUA	chr12:21789969-21790229(-)$1	260	242	250	15.0833
GAAAUGAA	chr12:46357788-46358061(-)$1	273	108	116	15.2500
AAAAUGCA	chr7:72903449-72903686(-)$1	237	74	82	15.1666
aaaaagaa	chr7:27832583-27832810(+)$1	227	6	14	16.7500
AUAAUGAA	chr6:35837484-35837745(-)$1	261	184	192	15.4166

#otherMatches

#Struct PSSM
::::::::	chr3:169700848-169701142(+)$1	294	121	129	16.7500
qqqqqqqq	chr11:62293662-62293889(-)$1	227	158	166	15.5833
++++++ee	chr2:190339931-190340257(+)$1	326	45	53	16.7500
d:::EEEE	chr1:165723364-165723613(-)$1	249	116	124	15.5000
44dddd33	chr11:62293185-62293427(-)$1	242	80	88	15.4166
:::::GGG	chr21:40571099-40571412(-)$1	313	106	114	15.4166
9999999f	chr11:62284844-62285115(-)$1	271	204	212	19.6666
JJJJJJYY	chr5:10264737-10265057(+)$1	320	151	159	15.4166
pppppppd	chr4:68358489-68358789(-)$1	300	121	129	16.3333
::::::::	chr11:11964381-11964703(+)$1	322	119	127	15.2500
::::::::	chr2:187368820-187369039(+)$1	219	64	72	16.7500
####bbtt	chr1:214816305-214816544(+)$1	239	189	197	19.6666
::::::::	chrM:13266-13496(+)$1	230	122	130	15.5000
FFFBB{DD	chr1:220195597-220195855(-)$1	258	24	32	15.2500
::::::::	chr21:34921813-34922083(+)$1	270	72	80	16.7500
rrrrrrrr	chr2:55771958-55772236(+)$1	278	205	213	15.0833
dddnnnnn	chr4:68383826-68384144(-)$1	318	192	200	15.2500
::::::::	chr11:62298293-62298533(-)$1	240	26	34	15.4166
2eeeee88	chr10:70098796-70099029(+)$1	233	189	197	15.4166
$$$$bbmm	chr8:53569110-53569406(-)$1	296	70	78	16.3333
b[cccqqq	chr5:70806029-70806277(+)$1	248	5	13	15.5000
E:bb[fff	chr11:62291603-62291812(-)$1	209	112	120	15.5833
:ddddppp	chr12:122992666-122992913(-)$1	247	113	121	16.3333
Dffffff[	chr14:61278600-61278930(+)$1	330	153	161	19.6666
::::::::	chr6:87970248-87970555(+)$1	307	25	33	15.1666
::::::::	chr1:171526286-171526511(+)$1	225	101	109	16.7500
ffffff::	chr7:91623834-91624063(+)$1	229	67	75	15.4166
4444eeee	chr18:9254585-9254877(+)$1	292	49	57	16.3333
rreeeee]	chr7:91708343-91708627(+)$1	284	62	70	19.6666
++++++++	chr12:46320163-46320474(-)$1	311	69	77	15.4166
ssssssss	chr11:62294319-62294593(-)$1	274	7	15	15.5833
cppppppp	chr12:6692404-6692644(-)$1	240	228	236	16.7500
wwwdddd:	chrM:13255-13466(+)$1	211	133	141	15.5000
9999999f	chr11:62284793-62285044(-)$1	251	133	141	19.6666
333fffff	chr7:91631594-91631847(+)$1	253	92	100	16.7500
[ggggggg	chr17:29195250-29195531(+)$1	281	171	179	15.3333
dd::::::	chr7:91643462-91643696(+)$1	234	64	72	15.5833
d:::::::	chr7:158485905-158486185(-)$1	280	21	29	15.1666
::::::::	chr7:91624922-91625176(+)$1	254	126	134	16.7500
::::::::	chr4:13605609-13605939(-)$1	330	261	269	14.9166
fffccc!!	chr12:6687155-6687403(-)$1	248	118	126	15.4166
i!!fffff	chr20:32681408-32681637(-)$1	229	23	31	15.5000
mmmmccch	chr1:220152740-220153016(-)$1	276	26	34	19.6666
hhhhhhhh	chr14:56107746-56108026(+)$1	280	145	153	15.3333
++++++++	chr13:98667721-98667996(+)$1	275	93	101	15.4166
::::::::	chr16:8997030-8997358(-)$1	328	0	8	14.9166
d::::HHH	chr1:39800589-39800871(+)$1	282	24	32	19.6666
]cccJJJJ	chr11:3023120-3023367(-)$1	247	99	107	15.4166
b22bb]cc	chr8:30938619-30938886(+)$1	267	67	75	15.5833
J:eeeee[	chr17:65900716-65900974(+)$1	258	24	32	15.1666
++++++++	chr12:122995555-122995760(-)$1	205	60	68	16.3333
::::::::	chr7:77378758-77379101(+)$1	343	41	49	16.7500
immmmiii	chr17:62498186-62498441(-)$1	255	172	180	15.2500
g333hhhh	chr1:22033182-22033428(-)$1	246	85	93	19.6666
::::::::	chr11:62288506-62288797(-)$1	291	100	108	15.5833
e]ccc]ee	chr12:21789969-21790229(-)$1	260	242	250	15.0833
dd::JJJJ	chr12:46357788-46358061(-)$1	273	108	116	15.2500
d333dddd	chr7:72903449-72903686(-)$1	237	74	82	15.1666
::::::::	chr7:27832583-27832810(+)$1	227	6	14	16.7500
]ffffff:	chr6:35837484-35837745(-)$1	261	184	192	15.4166

#DB
........	chr3:169700848-169701142(+)$1	1	121	129	16.7500
........	chr11:62293662-62293889(-)$1	1	158	166	15.5833
......((	chr2:190339931-190340257(+)$1	1	45	53	16.7500
)...((((	chr1:165723364-165723613(-)$1	1	116	124	15.5000
..))))..	chr11:62293185-62293427(-)$1	1	80	88	15.4166
.....)))	chr21:40571099-40571412(-)$1	1	106	114	15.4166
.......)	chr11:62284844-62285115(-)$1	1	204	212	19.6666
))))))..	chr5:10264737-10265057(+)$1	1	151	159	15.4166
.......)	chr4:68358489-68358789(-)$1	1	121	129	16.3333
........	chr11:11964381-11964703(+)$1	1	119	127	15.2500
........	chr2:187368820-187369039(+)$1	1	64	72	16.7500
....((..	chr1:214816305-214816544(+)$1	1	189	197	19.6666
........	chrM:13266-13496(+)$1	1	122	130	15.5000
(((((.((	chr1:220195597-220195855(-)$1	1	24	32	15.2500
........	chr21:34921813-34922083(+)$1	1	72	80	16.7500
........	chr2:55771958-55772236(+)$1	1	205	213	15.0833
(((.....	chr4:68383826-68384144(-)$1	1	192	200	15.2500
........	chr11:62298293-62298533(-)$1	1	26	34	15.4166
.)))))..	chr10:70098796-70099029(+)$1	1	189	197	15.4166
....((..	chr8:53569110-53569406(-)$1	1	70	78	16.3333
(.(((...	chr5:70806029-70806277(+)$1	1	5	13	15.5000
(.((.(((	chr11:62291603-62291812(-)$1	1	112	120	15.5833
.((((...	chr12:122992666-122992913(-)$1	1	113	121	16.3333
)((((((.	chr14:61278600-61278930(+)$1	1	153	161	19.6666
........	chr6:87970248-87970555(+)$1	1	25	33	15.1666
........	chr1:171526286-171526511(+)$1	1	101	109	16.7500
))))))..	chr7:91623834-91624063(+)$1	1	67	75	15.4166
....))))	chr18:9254585-9254877(+)$1	1	49	57	16.3333
..))))).	chr7:91708343-91708627(+)$1	1	62	70	19.6666
........	chr12:46320163-46320474(-)$1	1	69	77	15.4166
........	chr11:62294319-62294593(-)$1	1	7	15	15.5833
(.......	chr12:6692404-6692644(-)$1	1	228	236	16.7500
...)))).	chrM:13255-13466(+)$1	1	133	141	15.5000
.......)	chr11:62284793-62285044(-)$1	1	133	141	19.6666
...)))))	chr7:91631594-91631847(+)$1	1	92	100	16.7500
.(((((((	chr17:29195250-29195531(+)$1	1	171	179	15.3333
))......	chr7:91643462-91643696(+)$1	1	64	72	15.5833
).......	chr7:158485905-158486185(-)$1	1	21	29	15.1666
........	chr7:91624922-91625176(+)$1	1	126	134	16.7500
........	chr4:13605609-13605939(-)$1	1	261	269	14.9166
((((((..	chr12:6687155-6687403(-)$1	1	118	126	15.4166
(..(((((	chr20:32681408-32681637(-)$1	1	23	31	15.5000
....))))	chr1:220152740-220153016(-)$1	1	26	34	19.6666
))))))))	chr14:56107746-56108026(+)$1	1	145	153	15.3333
........	chr13:98667721-98667996(+)$1	1	93	101	15.4166
........	chr16:8997030-8997358(-)$1	1	0	8	14.9166
)....(((	chr1:39800589-39800871(+)$1	1	24	32	19.6666
.)))((((	chr11:3023120-3023367(-)$1	1	99	107	15.4166
)..)).))	chr8:30938619-30938886(+)$1	1	67	75	15.5833
(.(((((.	chr17:65900716-65900974(+)$1	1	24	32	15.1666
........	chr12:122995555-122995760(-)$1	1	60	68	16.3333
........	chr7:77378758-77379101(+)$1	1	41	49	16.7500
(....)))	chr17:62498186-62498441(-)$1	1	172	180	15.2500
)...))))	chr1:22033182-22033428(-)$1	1	85	93	19.6666
........	chr11:62288506-62288797(-)$1	1	100	108	15.5833
).))).))	chr12:21789969-21790229(-)$1	1	242	250	15.0833
))..))))	chr12:46357788-46358061(-)$1	1	108	116	15.2500
)...))))	chr7:72903449-72903686(-)$1	1	74	82	15.1666
........	chr7:27832583-27832810(+)$1	1	6	14	16.7500
.)))))).	chr6:35837484-35837745(-)$1	1	184	192	15.4166

#PSSM
A : 0.88	C : 0.03	G : 0.03	a : 0.03	U : 0.01	
A : 0.85	C : 0.05	G : 0.03	a : 0.03	U : 0.03	
A : 0.86	G : 0.05	a : 0.03	C : 0.03	U : 0.01	
A : 0.83	G : 0.05	U : 0.05	C : 0.03	a : 0.03	
U : 0.75	A : 0.13	G : 0.08	a : 0.03	
G : 0.88	A : 0.06	g : 0.03	C : 0.01	
A : 0.90	a : 0.03	C : 0.03	G : 0.01	U : 0.01	
A : 0.93	a : 0.03	C : 0.01	G : 0.01	

#score	974.6666666666683
#seq	60
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_CDS_m2_run1.nuc.txt

#NT
GGGCGAGG	chr4:166300354-166300601(+)$1	247	25	33	15.4473
GGGCGGGG	chr2:153575041-153575309(+)$1	268	42	50	19.9210
GGGCGGGG	chr19:55718428-55718685(-)$1	257	25	33	19.9210
GGGCGGGG	chr3:194353764-194354128(-)$1	364	350	358	19.9210
GGGCGGCG	chr3:152880394-152880638(+)$1	244	120	128	16.3026
GGGCGGCG	chr19:50016606-50016830(+)$1	224	160	168	16.3026
gggcggUG	chr16:48643598-48643901(-)$1	303	28	36	15.9736
GGACGGGG	chr9:124132300-124132552(-)$1	252	55	63	15.5131
GGGCUGGG	chr5:135364742-135364976(+)$1	234	217	225	16.0394
GGGCGGUG	chr1:36929676-36929933(-)$1	257	134	142	15.9736
GGGCGGGG	chr2:61244761-61245074(+)$1	313	20	28	19.9210
GGGCGGGU	chr17:61919822-61920137(-)$1	315	120	128	15.4473
GGCCGGGG	chr2:21266664-21266869(-)$1	205	195	203	15.5131
GGUCGGGG	chr16:90075648-90075923(-)$1	275	176	184	15.5789
UGGCGGGG	chr11:76506650-76507027(+)$1	377	242	250	15.7105
GGGCCGGG	chr11:67275394-67275711(-)$1	317	215	223	16.1710
gggcgggc	chr11:129939816-129940071(+)$1	255	222	230	15.5789
GGGCCGGG	chr9:132586193-132586472(-)$1	279	116	124	16.1710
GGGCAGGG	chr11:62303317-62303578(-)$1	261	228	236	15.9736
gggccggg	chr2:101924825-101925101(-)$1	276	143	151	16.1710
GAGCGGGG	chr7:65446937-65447270(-)$1	333	81	89	15.3157
GGGCGGGU	chr6:31239476-31239727(-)$1	251	52	60	15.4473
gggcgggg	chr10:7708703-7709042(-)$1	339	5	13	19.9210
GGUCGGGG	chr5:176730180-176730498(-)$1	318	106	114	15.5789
GGGCGGUG	chr7:138720510-138720859(-)$1	349	311	319	15.9736
gggcgggg	chr21:45719860-45720111(+)$1	251	30	38	19.9210
GGGCGGGG	chr15:51057563-51057781(-)$1	218	155	163	19.9210
GGGCGGGG	chr8:141521440-141521737(+)$1	297	187	195	19.9210
GGGCCGGG	chr4:166300509-166300734(+)$1	225	115	123	16.1710
gggcuggg	chr7:6098608-6098865(-)$1	257	120	128	16.0394
GGGUGGGG	chr17:1648373-1648608(+)$1	235	4	12	15.3815
gggcgcgg	chr2:171572724-171572990(+)$1	266	130	138	15.5789
AGGCGGGG	chr20:33264674-33264990(-)$1	316	296	304	15.6447
GGGAGGGG	chr5:154135153-154135456(+)$1	303	6	14	15.4473
GGGCGCGG	chr20:3026651-3026920(+)$1	269	86	94	15.5789
gggcggcg	chr9:139137368-139137639(-)$1	271	3	11	16.3026
GGGCGGGG	chr19:36606297-36606664(+)$1	367	291	299	19.9210
GGGAgggg	chr19:51857351-51857612(-)$1	261	224	232	15.4473
GGGCGGCG	chr17:4692173-4692449(+)$1	276	110	118	16.3026
gggcggcg	chr19:1401217-1401474(-)$1	257	60	68	16.3026
GGGCGGGG	chr1:67519587-67519877(-)$1	290	25	33	19.9210
UGGCGGGG	chr12:113796314-113796594(+)$1	280	203	211	15.7105
GGGCGGGG	chr19:7293748-7294025(-)$1	277	245	253	19.9210
GUGCGGGG	chr1:220101671-220101977(-)$1	306	15	23	15.2500
GGGCGGGC	chr9:100818982-100819209(+)$1	227	146	154	15.5789
GGGCCGGG	chr17:26684361-26684628(-)$1	267	56	64	16.1710
GGGCGCGG	chr6:1312817-1313124(+)$1	307	184	192	15.5789
GGGCUGGG	chr12:122231316-122231572(-)$1	256	186	194	16.0394
GGCCGGGG	chr19:34919238-34919542(+)$1	304	143	151	15.5131
GGACGGGG	chr13:48611763-48612092(+)$1	329	61	69	15.5131
gggcggcg	chr19:1592476-1592726(-)$1	250	51	59	16.3026
AGGCGGGG	chr16:30087533-30087862(+)$1	329	4	12	15.6447
gggcggcg	chr7:150020486-150020750(+)$1	264	47	55	16.3026
GGGCGGCG	chr16:67063092-67063434(+)$1	342	40	48	16.3026
GGUCGGGG	chr14:95080713-95080918(+)$1	205	6	14	15.5789
UGGCGGGG	chr1:54665814-54666052(+)$1	238	61	69	15.7105
GGGCGGGC	chr18:77794367-77794674(+)$1	307	142	150	15.5789
AGGCGGGG	chr7:75508322-75508577(+)$1	255	51	59	15.6447
cggcgggg	chr5:78280963-78281230(-)$1	267	2	10	15.5131
GGGCGGAG	chr2:26568902-26569174(+)$1	272	64	72	15.9078
gggcgcgg	chr17:80477655-80477907(+)$1	252	135	143	15.5789
GGGCAGGG	chr1:109792903-109793198(+)$1	295	267	275	15.9736
GGGCGGAG	chr3:38178413-38178682(-)$1	269	39	47	15.9078
GAGCGGGG	chr11:45944393-45944667(+)$1	274	161	169	15.3157
GCGCGGGG	chr4:84205756-84206015(-)$1	259	125	133	15.2500
GGGCGGGG	chr11:64018910-64019236(+)$1	326	18	26	19.9210
GGGCAGGG	chr19:18433726-18434000(-)$1	274	177	185	15.9736
GGGCGGGG	chr6:44224321-44224559(-)$1	238	151	159	19.9210
GGGUGGGG	chr2:3623149-3623375(+)$1	226	149	157	15.3815
GGGCCGGG	chr8:22262187-22262459(+)$1	272	254	262	16.1710
GGGCGGGC	chr9:91933340-91933620(+)$1	280	20	28	15.5789
GGGCGGGG	chr1:1370989-1371231(+)$1	242	41	49	19.9210
GGGAGGGG	chr8:97605607-97605823(+)$1	216	1	9	15.4473
GGGCGAGG	chr11:67888436-67888736(-)$1	300	115	123	15.4473
GGGCUGGG	chr8:145065267-145065499(+)$1	232	37	45	16.0394

#otherMatches

#Struct PSSM
fffflllf	chr12:110011092-110011397(-)$1	305	78	86	15.7105
FFFFF{CC	chr4:166300354-166300601(+)$1	247	25	33	15.4473
GGGggggg	chr2:153575041-153575309(+)$1	268	42	50	19.9210
DDDDGGGG	chr19:55718428-55718685(-)$1	257	25	33	19.9210
FFFFF}BB	chr3:194353764-194354128(-)$1	364	350	358	19.9210
YFFFFFF}	chr3:152880394-152880638(+)$1	244	120	128	16.3026
oohhhhhh	chr19:50016606-50016830(+)$1	224	160	168	16.3026
FFFFFF:e	chr16:48643598-48643901(-)$1	303	28	36	15.9736
DD{GGGGG	chr9:124132300-124132552(-)$1	252	55	63	15.5131
c[ccclll	chr5:135364742-135364976(+)$1	234	217	225	16.0394
eee:dddd	chr1:36929676-36929933(-)$1	257	134	142	15.9736
ggggggg:	chr2:61244761-61245074(+)$1	313	20	28	19.9210
ffffffpp	chr17:61919822-61920137(-)$1	315	120	128	15.4473
FFFFYYCC	chr2:21266664-21266869(-)$1	205	195	203	15.5131
e[bb[bb[	chr16:90075648-90075923(-)$1	275	176	184	15.5789
dddddddd	chr11:76506650-76507027(+)$1	377	242	250	15.7105
ddffffff	chr11:67275394-67275711(-)$1	317	215	223	16.1710
brrrrrrr	chr11:129939816-129940071(+)$1	255	222	230	15.5789
2a]eeeee	chr9:132586193-132586472(-)$1	279	116	124	16.1710
BBZZZCCC	chr11:62303317-62303578(-)$1	261	228	236	15.9736
[ggggggg	chr2:101924825-101925101(-)$1	276	143	151	16.1710
J:ccc[bb	chr7:65446937-65447270(-)$1	333	81	89	15.3157
ddddqqqq	chr6:31239476-31239727(-)$1	251	52	60	15.4473
{GGGGGGG	chr10:7708703-7709042(-)$1	339	5	13	19.9210
BJJJJJJJ	chr5:176730180-176730498(-)$1	318	106	114	15.5789
GGGGccc[	chr7:138720510-138720859(-)$1	349	311	319	15.9736
{A{A{A:c	chr21:45719860-45720111(+)$1	251	30	38	19.9210
JJJJJJJJ	chr15:51057563-51057781(-)$1	218	155	163	19.9210
bbeeeeec	chr8:141521440-141521737(+)$1	297	187	195	19.9210
[ggggggg	chr4:166300509-166300734(+)$1	225	115	123	16.1710
b[bb[ddd	chr7:6098608-6098865(-)$1	257	120	128	16.0394
Eggggggg	chr17:1648373-1648608(+)$1	235	4	12	15.3815
DDD{GGGG	chr2:171572724-171572990(+)$1	266	130	138	15.5789
ccc22eee	chr20:33264674-33264990(-)$1	316	296	304	15.6447
DDKKBB{C	chr5:154135153-154135456(+)$1	303	6	14	15.4473
dddd[eee	chr20:3026651-3026920(+)$1	269	86	94	15.5789
::gggggg	chr9:139137368-139137639(-)$1	271	3	11	16.3026
nccc]a]a	chr19:36606297-36606664(+)$1	367	291	299	19.9210
FFFFF}DD	chr19:51857351-51857612(-)$1	261	224	232	15.4473
==a[ccc[	chr17:4692173-4692449(+)$1	276	110	118	16.3026
JJJJJJJJ	chr19:1401217-1401474(-)$1	257	60	68	16.3026
miiiiiii	chr1:67519587-67519877(-)$1	290	25	33	19.9210
2ccc]bb]	chr12:113796314-113796594(+)$1	280	203	211	15.7105
A}FFFFFF	chr19:7293748-7294025(-)$1	277	245	253	19.9210
cc[eeeee	chr1:220101671-220101977(-)$1	306	15	23	15.2500
EEeeeeen	chr9:100818982-100819209(+)$1	227	146	154	15.5789
bb]ccc::	chr17:26684361-26684628(-)$1	267	56	64	16.1710
:ffffff[	chr6:1312817-1313124(+)$1	307	184	192	15.5789
DDDCCCDD	chr12:122231316-122231572(-)$1	256	186	194	16.0394
eeeee]ff	chr19:34919238-34919542(+)$1	304	143	151	15.5131
d!!eeeee	chr13:48611763-48612092(+)$1	329	61	69	15.5131
A{EEEEEK	chr19:1592476-1592726(-)$1	250	51	59	16.3026
:EEEEEgg	chr16:30087533-30087862(+)$1	329	4	12	15.6447
ff[a[===	chr7:150020486-150020750(+)$1	264	47	55	16.3026
DDDD:HHH	chr16:67063092-67063434(+)$1	342	40	48	16.3026
EEEEffff	chr14:95080713-95080918(+)$1	205	6	14	15.5789
bbhhhhhh	chr1:54665814-54666052(+)$1	238	61	69	15.7105
2eeeee22	chr18:77794367-77794674(+)$1	307	142	150	15.5789
eee[a[gg	chr7:75508322-75508577(+)$1	255	51	59	15.6447
c[ffffff	chr5:78280963-78281230(-)$1	267	2	10	15.5131
fff[eeee	chr2:26568902-26569174(+)$1	272	64	72	15.9078
4iiiiiii	chr17:80477655-80477907(+)$1	252	135	143	15.5789
ffff:JJJ	chr1:109792903-109793198(+)$1	295	267	275	15.9736
=======J	chr3:38178413-38178682(-)$1	269	39	47	15.9078
22ddddee	chr11:45944393-45944667(+)$1	274	161	169	15.3157
hhh]aDDD	chr4:84205756-84206015(-)$1	259	125	133	15.2500
========	chr11:64018910-64019236(+)$1	326	18	26	19.9210
dddd]ddd	chr19:18433726-18434000(-)$1	274	177	185	15.9736
a]bb]ddd	chr6:44224321-44224559(-)$1	238	151	159	19.9210
hhhhhhhh	chr2:3623149-3623375(+)$1	226	149	157	15.3815
eeeeeFFF	chr8:22262187-22262459(+)$1	272	254	262	16.1710
DDDD{JJJ	chr9:91933340-91933620(+)$1	280	20	28	15.5789
mmmddddd	chr1:1370989-1371231(+)$1	242	41	49	19.9210
BB{EEEEE	chr8:97605607-97605823(+)$1	216	1	9	15.4473
eggggggg	chr11:67888436-67888736(-)$1	300	115	123	15.4473
c[a[cccl	chr8:145065267-145065499(+)$1	232	37	45	16.0394

#DB
((((...)	chr12:110011092-110011397(-)$1	1	78	86	15.7105
(((((.((	chr4:166300354-166300601(+)$1	1	25	33	15.4473
((((((((	chr2:153575041-153575309(+)$1	1	42	50	19.9210
((((((((	chr19:55718428-55718685(-)$1	1	25	33	19.9210
))))).))	chr3:194353764-194354128(-)$1	1	350	358	19.9210
.)))))).	chr3:152880394-152880638(+)$1	1	120	128	16.3026
..))))))	chr19:50016606-50016830(+)$1	1	160	168	16.3026
((((((.(	chr16:48643598-48643901(-)$1	1	28	36	15.9736
((.(((((	chr9:124132300-124132552(-)$1	1	55	63	15.5131
(.(((...	chr5:135364742-135364976(+)$1	1	217	225	16.0394
))).((((	chr1:36929676-36929933(-)$1	1	134	142	15.9736
))))))).	chr2:61244761-61245074(+)$1	1	20	28	19.9210
((((((..	chr17:61919822-61920137(-)$1	1	120	128	15.4473
))))..))	chr2:21266664-21266869(-)$1	1	195	203	15.5131
(.((.((.	chr16:90075648-90075923(-)$1	1	176	184	15.5789
((((((((	chr11:76506650-76507027(+)$1	1	242	250	15.7105
))))))))	chr11:67275394-67275711(-)$1	1	215	223	16.1710
(.......	chr11:129939816-129940071(+)$1	1	222	230	15.5789
.).)))))	chr9:132586193-132586472(-)$1	1	116	124	16.1710
))...)))	chr11:62303317-62303578(-)$1	1	228	236	15.9736
.(((((((	chr2:101924825-101925101(-)$1	1	143	151	16.1710
(.(((.((	chr7:65446937-65447270(-)$1	1	81	89	15.3157
((((....	chr6:31239476-31239727(-)$1	1	52	60	15.4473
.(((((((	chr10:7708703-7709042(-)$1	1	5	13	19.9210
((((((((	chr5:176730180-176730498(-)$1	1	106	114	15.5789
))))(((.	chr7:138720510-138720859(-)$1	1	311	319	15.9736
.(.(.(.(	chr21:45719860-45720111(+)$1	1	30	38	19.9210
((((((((	chr15:51057563-51057781(-)$1	1	155	163	19.9210
((((((((	chr8:141521440-141521737(+)$1	1	187	195	19.9210
.(((((((	chr4:166300509-166300734(+)$1	1	115	123	16.1710
(.((.(((	chr7:6098608-6098865(-)$1	1	120	128	16.0394
((((((((	chr17:1648373-1648608(+)$1	1	4	12	15.3815
(((.((((	chr2:171572724-171572990(+)$1	1	130	138	15.5789
)))..)))	chr20:33264674-33264990(-)$1	1	296	304	15.6447
((..((.(	chr5:154135153-154135456(+)$1	1	6	14	15.4473
((((.(((	chr20:3026651-3026920(+)$1	1	86	94	15.5789
..((((((	chr9:139137368-139137639(-)$1	1	3	11	16.3026
.))).).)	chr19:36606297-36606664(+)$1	1	291	299	19.9210
))))).))	chr19:51857351-51857612(-)$1	1	224	232	15.4473
(((.(((.	chr17:4692173-4692449(+)$1	1	110	118	16.3026
((((((((	chr19:1401217-1401474(-)$1	1	60	68	16.3026
.)))))))	chr1:67519587-67519877(-)$1	1	25	33	19.9210
.))).)).	chr12:113796314-113796594(+)$1	1	203	211	15.7105
).))))))	chr19:7293748-7294025(-)$1	1	245	253	19.9210
((.(((((	chr1:220101671-220101977(-)$1	1	15	23	15.2500
(((((((.	chr9:100818982-100819209(+)$1	1	146	154	15.5789
)).)))..	chr17:26684361-26684628(-)$1	1	56	64	16.1710
.((((((.	chr6:1312817-1313124(+)$1	1	184	192	15.5789
((((((((	chr12:122231316-122231572(-)$1	1	186	194	16.0394
))))).))	chr19:34919238-34919542(+)$1	1	143	151	15.5131
(..(((((	chr13:48611763-48612092(+)$1	1	61	69	15.5131
(.(((((.	chr19:1592476-1592726(-)$1	1	51	59	16.3026
.(((((((	chr16:30087533-30087862(+)$1	1	4	12	15.6447
((.(.(((	chr7:150020486-150020750(+)$1	1	47	55	16.3026
((((.(((	chr16:67063092-67063434(+)$1	1	40	48	16.3026
((((((((	chr14:95080713-95080918(+)$1	1	6	14	15.5789
))))))))	chr1:54665814-54666052(+)$1	1	61	69	15.7105
.)))))..	chr18:77794367-77794674(+)$1	1	142	150	15.5789
(((.(.((	chr7:75508322-75508577(+)$1	1	51	59	15.6447
(.((((((	chr5:78280963-78281230(-)$1	1	2	10	15.5131
(((.((((	chr2:26568902-26569174(+)$1	1	64	72	15.9078
.)))))))	chr17:80477655-80477907(+)$1	1	135	143	15.5789
)))).)))	chr1:109792903-109793198(+)$1	1	267	275	15.9736
)))))))(	chr3:38178413-38178682(-)$1	1	39	47	15.9078
..))))((	chr11:45944393-45944667(+)$1	1	161	169	15.3157
))).))))	chr4:84205756-84206015(-)$1	1	125	133	15.2500
((((((((	chr11:64018910-64019236(+)$1	1	18	26	19.9210
)))).)))	chr19:18433726-18434000(-)$1	1	177	185	15.9736
).)).)))	chr6:44224321-44224559(-)$1	1	151	159	19.9210
((((((((	chr2:3623149-3623375(+)$1	1	149	157	15.3815
))))))))	chr8:22262187-22262459(+)$1	1	254	262	16.1710
((((.(((	chr9:91933340-91933620(+)$1	1	20	28	15.5789
...))))(	chr1:1370989-1371231(+)$1	1	41	49	19.9210
((.(((((	chr8:97605607-97605823(+)$1	1	1	9	15.4473
((((((((	chr11:67888436-67888736(-)$1	1	115	123	15.4473
(.(.(((.	chr8:145065267-145065499(+)$1	1	37	45	16.0394

#PSSM
G : 0.73	g : 0.15	U : 0.05	A : 0.03	c : 0.01	
G : 0.77	g : 0.17	A : 0.02	U : 0.01	C : 0.01	
G : 0.73	g : 0.17	U : 0.03	A : 0.02	C : 0.02	
C : 0.76	c : 0.17	A : 0.03	U : 0.02	
G : 0.67	g : 0.15	C : 0.06	U : 0.03	A : 0.03	c : 0.01	u : 0.01	
G : 0.76	g : 0.15	A : 0.02	c : 0.02	C : 0.02	
G : 0.71	g : 0.11	C : 0.05	c : 0.05	U : 0.03	A : 0.02	
G : 0.76	g : 0.15	C : 0.03	U : 0.02	c : 0.01	

#score	1256.8947368421059
#seq	76
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_CDS_m3_run1.nuc.txt

#NT
CGGGGCC	chr16:88762922-88763173(-)$1	251	22	29	13.0512
CUGGACC	chr12:120534715-120534967(-)$1	252	152	159	13.5641
CUCGGCC	chr19:6413391-6413709(-)$1	318	10	17	13.4358
CUGGCCC	chr21:46396551-46396835(+)$1	284	125	132	13.5641
CUGAGCC	chr19:51301519-51301788(-)$1	269	15	22	13.6923
CUGGGCC	chr1:11849279-11849525(-)$1	246	34	41	17.0256
CUAGGCC	chr17:74078562-74078802(-)$1	240	75	82	13.0512
CUGUGCC	chr17:79826389-79826628(-)$1	239	155	162	14.0769
CUGAGCC	chr19:47778290-47778560(+)$1	270	216	223	13.6923
CAGGGCC	chr16:1496204-1496491(-)$1	287	181	188	13.1794
CCGGGCC	chr19:1584474-1584752(-)$1	278	1	8	12.9230
CUGUGCC	chr17:79826314-79826562(-)$1	248	89	96	14.0769
CUGGGCC	chr19:1581102-1581368(-)$1	266	38	45	17.0256
CUGUGCC	chr1:156219556-156219820(-)$1	264	174	181	14.0769
CUGUGCC	chr17:79826162-79826493(-)$1	331	20	27	14.0769
CAGGGCC	chr1:6694614-6694879(-)$1	265	86	93	13.1794
CUGGACC	chr12:120534542-120534845(-)$1	303	30	37	13.5641
CUGGGCC	chrX:118925436-118925683(-)$1	247	215	222	17.0256
CUGGACC	chr9:136208243-136208520(-)$1	277	28	35	13.5641
CUGGCCC	chr9:130269177-130269414(-)$1	237	18	25	13.5641
CUCGGCC	chr7:4799037-4799284(+)$1	247	91	98	13.4358
CUGUGCC	chr19:3543253-3543523(-)$1	270	87	94	14.0769
CUGGCCC	chr19:45854170-45854400(-)$1	230	42	49	13.5641
cucggcc	chr21:46359946-46360180(+)$1	234	139	146	13.4358
CUGUGCC	chr17:46620728-46621034(-)$1	306	35	42	14.0769
CUGGGCC	chr20:61919625-61919947(+)$1	322	146	153	17.0256
CUGGGCC	chr1:11849358-11849599(-)$1	241	108	115	17.0256
CUCGGCC	chr19:6413633-6413849(-)$1	216	150	157	13.4358
CUGGCCC	chr19:55998518-55998769(+)$1	251	33	40	13.5641
cuuggcc	chr19:11256968-11257246(-)$1	278	36	43	13.1794
CUGGGCC	chr19:7535080-7535366(+)$1	286	261	268	17.0256
CUGCGCC	chr19:8468333-8468646(+)$1	313	112	119	13.4358
CUGGACC	chr12:120534784-120535015(-)$1	231	200	207	13.5641
CUGAGCC	chr19:47778360-47778637(+)$1	277	146	153	13.6923
cuuggcc	chr4:2939873-2940167(-)$1	294	151	158	13.1794
CGGGGCC	chr16:31501591-31501871(-)$1	280	228	235	13.0512
CAGGGCC	chr19:1582518-1582758(-)$1	240	8	15	13.1794
CUGGGCC	chrX:53263356-53263619(-)$1	263	142	149	17.0256

#otherMatches

#Struct PSSM
JJJJJJJ	chr17:47126691-47126970(+)$1	279	215	222	17.0256
ddd:DDD	chr16:88762922-88763173(-)$1	251	22	29	13.0512
fDDDDBB	chr12:120534715-120534967(-)$1	252	152	159	13.5641
:::DDDD	chr19:6413391-6413709(-)$1	318	10	17	13.4358
ccc]bbd	chr21:46396551-46396835(+)$1	284	125	132	13.5641
[ccc[ee	chr19:51301519-51301788(-)$1	269	15	22	13.6923
=======	chr1:11849279-11849525(-)$1	246	34	41	17.0256
dd]ccc]	chr17:74078562-74078802(-)$1	240	75	82	13.0512
$dddd%%	chr17:79826389-79826628(-)$1	239	155	162	14.0769
eeeccc[	chr19:47778290-47778560(+)$1	270	216	223	13.6923
JJJJJ::	chr16:1496204-1496491(-)$1	287	181	188	13.1794
:BBdddd	chr19:1584474-1584752(-)$1	278	1	8	12.9230
gg333ee	chr17:79826314-79826562(-)$1	248	89	96	14.0769
mmggggg	chr19:1581102-1581368(-)$1	266	38	45	17.0256
dddd[==	chr1:156219556-156219820(-)$1	264	174	181	14.0769
&&a[ccc	chr17:79826162-79826493(-)$1	331	20	27	14.0769
22hhhhh	chr1:6694614-6694879(-)$1	265	86	93	13.1794
f::FFFF	chr12:120534542-120534845(-)$1	303	30	37	13.5641
cc]ccc]	chrX:118925436-118925683(-)$1	247	215	222	17.0256
GGGBB::	chr9:136208243-136208520(-)$1	277	28	35	13.5641
GGJJJJJ	chr9:130269177-130269414(-)$1	237	18	25	13.5641
nnnccc4	chr7:4799037-4799284(+)$1	247	91	98	13.4358
e]fffff	chr19:3543253-3543523(-)$1	270	87	94	14.0769
llbb:::	chr19:45854170-45854400(-)$1	230	42	49	13.5641
mmmmccc	chr21:46359946-46360180(+)$1	234	139	146	13.4358
b:bb[ee	chr17:46620728-46621034(-)$1	306	35	42	14.0769
[dddd[c	chr20:61919625-61919947(+)$1	322	146	153	17.0256
dd]dddd	chr1:11849358-11849599(-)$1	241	108	115	17.0256
fffff::	chr19:6413633-6413849(-)$1	216	150	157	13.4358
C{BBCCC	chr19:55998518-55998769(+)$1	251	33	40	13.5641
FFFFCCC	chr19:11256968-11257246(-)$1	278	36	43	13.1794
YYFFFFF	chr19:7535080-7535366(+)$1	286	261	268	17.0256
%%ccc))	chr19:8468333-8468646(+)$1	313	112	119	13.4358
f:CCCZZ	chr12:120534784-120535015(-)$1	231	200	207	13.5641
eeeccc[	chr19:47778360-47778637(+)$1	277	146	153	13.6923
!ddddmm	chr4:2939873-2940167(-)$1	294	151	158	13.1794
CCCDDDD	chr16:31501591-31501871(-)$1	280	228	235	13.0512
FFFKKGG	chr19:1582518-1582758(-)$1	240	8	15	13.1794
eeeee$$	chrX:53263356-53263619(-)$1	263	142	149	17.0256

#DB
)))))))	chr17:47126691-47126970(+)$1	1	215	222	17.0256
))).(((	chr16:88762922-88763173(-)$1	1	22	29	13.0512
)))))((	chr12:120534715-120534967(-)$1	1	152	159	13.5641
...((((	chr19:6413391-6413709(-)$1	1	10	17	13.4358
))).))(	chr21:46396551-46396835(+)$1	1	125	132	13.5641
.(((.((	chr19:51301519-51301788(-)$1	1	15	22	13.6923
(((((((	chr1:11849279-11849525(-)$1	1	34	41	17.0256
)).))).	chr17:74078562-74078802(-)$1	1	75	82	13.0512
.((((..	chr17:79826389-79826628(-)$1	1	155	162	14.0769
((((((.	chr19:47778290-47778560(+)$1	1	216	223	13.6923
(((((..	chr16:1496204-1496491(-)$1	1	181	188	13.1794
.((((((	chr19:1584474-1584752(-)$1	1	1	8	12.9230
))...))	chr17:79826314-79826562(-)$1	1	89	96	14.0769
..)))))	chr19:1581102-1581368(-)$1	1	38	45	17.0256
((((.((	chr1:156219556-156219820(-)$1	1	174	181	14.0769
..(.(((	chr17:79826162-79826493(-)$1	1	20	27	14.0769
..)))))	chr1:6694614-6694879(-)$1	1	86	93	13.1794
)..((((	chr12:120534542-120534845(-)$1	1	30	37	13.5641
)).))).	chrX:118925436-118925683(-)$1	1	215	222	17.0256
(((((..	chr9:136208243-136208520(-)$1	1	28	35	13.5641
(((((((	chr9:130269177-130269414(-)$1	1	18	25	13.5641
...))).	chr7:4799037-4799284(+)$1	1	91	98	13.4358
).)))))	chr19:3543253-3543523(-)$1	1	87	94	14.0769
..))...	chr19:45854170-45854400(-)$1	1	42	49	13.5641
....)))	chr21:46359946-46360180(+)$1	1	139	146	13.4358
).((.((	chr17:46620728-46621034(-)$1	1	35	42	14.0769
.((((.(	chr20:61919625-61919947(+)$1	1	146	153	17.0256
)).))))	chr1:11849358-11849599(-)$1	1	108	115	17.0256
)))))..	chr19:6413633-6413849(-)$1	1	150	157	13.4358
(.(((((	chr19:55998518-55998769(+)$1	1	33	40	13.5641
(((((((	chr19:11256968-11257246(-)$1	1	36	43	13.1794
..)))))	chr19:7535080-7535366(+)$1	1	261	268	17.0256
..(((..	chr19:8468333-8468646(+)$1	1	112	119	13.4358
).)))..	chr12:120534784-120535015(-)$1	1	200	207	13.5641
((((((.	chr19:47778360-47778637(+)$1	1	146	153	13.6923
.((((..	chr4:2939873-2940167(-)$1	1	151	158	13.1794
)))))))	chr16:31501591-31501871(-)$1	1	228	235	13.0512
(((..((	chr19:1582518-1582758(-)$1	1	8	15	13.1794
(((((..	chrX:53263356-53263619(-)$1	1	142	149	17.0256

#PSSM
C : 0.92	c : 0.07	
U : 0.76	A : 0.07	u : 0.07	G : 0.05	C : 0.02	
G : 0.82	C : 0.07	u : 0.05	A : 0.02	c : 0.02	
G : 0.66	U : 0.15	A : 0.07	g : 0.07	C : 0.02	
G : 0.71	A : 0.10	C : 0.10	g : 0.07	
C : 0.92	c : 0.07	
C : 0.92	c : 0.07	

#score	555.4102564102568
#seq	39
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_UTR_m1_run2.nuc.txt

#NT
GGGGGGUGAGGGUGGGGA	chr16:1749173-1749423(+)$1	250	86	104	25.8421
ggcggggcggggcggggg	chr1:245026275-245026514(-)$1	239	90	108	26.5438
GUGGGGAGGAGGAGGGAG	chr7:77166657-77166902(+)$1	245	58	76	27.9473
GGGGGGAGGGAGAUGGAG	chr2:97525560-97525833(-)$1	273	66	84	27.2456
GGGCGGGGAGGGAGGGGG	chr1:155658334-155658602(-)$1	268	89	107	27.7719
GGUGGAAGGGUGAUGGGG	chr1:28176889-28177164(+)$1	275	109	127	23.5614
GUUGGGAGGGGGAAGGUG	chr7:127231547-127231822(+)$1	275	125	143	24.8771
GGAGGGAGGGGAAGGGCG	chr8:25315656-25315901(-)$1	245	48	66	26.8070
GUUGGGAGGGGGUUGGGG	chr7:5569450-5569692(-)$1	242	182	200	26.5438
ggagggacggggcggggc	chr1:36789178-36789471(+)$1	293	67	85	24.1754
GGCGGGAGGGAGAGGGGG	chr6:117996612-117996872(+)$1	260	183	201	31.1052
gggggcagagggaggggc	chr2:242447651-242447909(-)$1	258	93	111	26.0175
GGGGGGAGGGGAAGGGAG	chr3:100428662-100428949(+)$1	287	107	125	30.4035
GGUGGGAAAGGGAGGGGC	chr15:74702100-74702360(-)$1	260	76	94	23.8245
ggguggggggggaggGUG	chr2:20550311-20550596(-)$1	285	96	114	28.2105
GGUGGGAGAAGGAGGAGG	chr15:79165208-79165491(+)$1	283	116	134	24.1754
ggggggcgggaccggggg	chr4:2935990-2936301(-)$1	311	75	93	24.4385
ggggggcggaggaggagg	chr3:185542677-185542941(-)$1	264	97	115	28.0350
ggcgggcgggugaggggg	chr19:56166190-56166469(+)$1	279	90	108	28.9122
GGGGGGUGGUUGAGGGGG	chrX:106893689-106893973(+)$1	284	97	115	27.7719
ggugguagggggagaagg	chr6:86352753-86352998(-)$1	245	181	199	23.5614
ggugggaggcggcgggcg	chr5:137688305-137688582(+)$1	277	134	152	25.1403
guggggccggggagcggg	chr19:3062292-3062531(-)$1	239	70	88	24.6140
GUGGGGCGGGGGAGCGAG	chr1:213031640-213031908(+)$1	268	114	132	25.4035
gggcggguggggaggggg	chr8:30669835-30670091(-)$1	256	85	103	28.0350
GCGGGUAGAGGGAGGGGG	chr20:57467335-57467628(+)$1	293	14	32	26.5438
CAGGGGUGGGGGAGGGGG	chr11:62482472-62482739(-)$1	267	115	133	28.0350
UUGGGGAGGAGGAGGGUG	chr12:54679569-54679839(+)$1	270	69	87	23.7368
GCGGGGAGGGGGUGGGGG	chr2:28974727-28975030(+)$1	303	101	119	32.1578
ggggggggugggaggggg	chr6:34664409-34664669(-)$1	260	88	106	31.8070
UGGGGGAUGGGGGGGGGG	chr7:98993974-98994239(-)$1	265	95	113	27.8596
ggggggugggguugggcg	chr14:23791032-23791285(+)$1	253	83	101	25.6666
UGGGGGGGGGGGUGGGGG	chr11:60658394-60658662(-)$1	268	84	102	29.7894
GGGGGGUGGGGGGUGGAG	chr5:145666606-145666854(+)$1	248	78	96	26.4561
gggggguggggguggggg	chr16:447637-447881(+)$1	244	51	69	33.6491
GGGGGGAGUGGGGUGGGG	chr3:101292956-101293225(+)$1	269	233	251	27.4210
ggggggaggaggaggggg	chr17:55333777-55334021(+)$1	244	207	225	33.9999
GGGGGGAUGGGGCGGAGG	chr19:16187710-16187985(+)$1	275	52	70	27.9473
ggcggcggggggaggagg	chr6:15248985-15249254(+)$1	269	77	95	25.1403
GGGGGGAGGGAGGGAGUG	chr5:137088381-137088623(-)$1	242	107	125	23.8245
UGGGGGUGGGGGAUGGGU	chr8:101963101-101963391(-)$1	290	64	82	24.2631
UUGGGGAGGGGGAGGGGG	chr20:57467262-57467497(+)$1	235	9	27	30.9298
GGGGGGAGGGGGAGGGGG	chr1:59247165-59247422(-)$1	257	16	34	37.8596
GGGUGGGGGGGGAUGGGA	chr11:9466841-9467082(+)$1	241	90	108	23.7368
GGUGGGGUGGGGAGUGGG	chr16:30535380-30535645(-)$1	265	196	214	25.7543
gaggggaggguggggagg	chr19:34287649-34287898(+)$1	249	5	23	23.9122
UGGGGGUGGGGGUGGGGU	chr1:150594888-150595160(-)$1	272	95	113	25.7543
GUGGGCAUGGGGUGGGGG	chr5:43290989-43291295(-)$1	306	96	114	25.0526
GCGUGGUGGGGGAGGGGG	chr6:29600544-29600832(-)$1	288	254	272	28.0350
GGCGAGAGCGGGAGGGGG	chr8:103424365-103424615(-)$1	250	101	119	26.1052
GAGGGGCGGUGGAGGGGU	chr19:41119580-41119830(+)$1	250	161	179	24.0000
ggcgggcgggggaggggg	chr2:191513668-191513927(+)$1	259	51	69	32.8596
GGGGGGAUGGGGUGGGAG	chr6:33171975-33172229(+)$1	254	101	119	29.2631
ggugggaggggguggggg	chr2:54197761-54198043(-)$1	282	88	106	33.2982
ggugguagggggagaagg	chr6:86352570-86352817(-)$1	247	0	18	23.5614
GGUGGGAGGGGGAGAGAG	chr9:139743349-139743616(+)$1	267	90	108	28.4736

#otherMatches

#Struct PSSM
IIIIIccc[dddd[a!!f	chr6:33172052-33172287(+)$1	235	24	42	29.2631
2a]a]eeeeeFFFFFF{B	chr16:1749173-1749423(+)$1	250	86	104	25.8421
eBB}DDDDdddd[ggggg	chr1:245026275-245026514(-)$1	239	90	108	26.5438
hhhh::::::::::::::	chr7:77166657-77166902(+)$1	245	58	76	27.9473
"a[ffffffrrrrrrrrr	chr2:97525560-97525833(-)$1	273	66	84	27.2456
eeeee:::::::::::::	chr1:155658334-155658602(-)$1	268	89	107	27.7719
gggg!!dddd[ccceeee	chr1:28176889-28177164(+)$1	275	109	127	23.5614
e]==============]d	chr7:127231547-127231822(+)$1	275	125	143	24.8771
:::ccc!!ccc!!dddd[	chr8:25315656-25315901(-)$1	245	48	66	26.8070
iii]ccc]bb]ffffff3	chr7:5569450-5569692(-)$1	242	182	200	26.5438
eeeeeccc4444bbIIII	chr1:36789178-36789471(+)$1	293	67	85	24.1754
]eeeee55555a55555f	chr6:117996612-117996872(+)$1	260	183	201	31.1052
::ddddssssssssssdd	chr2:242447651-242447909(-)$1	258	93	111	26.0175
xxxxxxxxxxxxxa]fff	chr3:100428662-100428949(+)$1	287	107	125	30.4035
bb999999999ccc]eee	chr15:74702100-74702360(-)$1	260	76	94	23.8245
EE{CCCKKDDDD::ffff	chr2:20550311-20550596(-)$1	285	96	114	28.2105
ggg####a!!appppppp	chr15:79165208-79165491(+)$1	283	116	134	24.1754
c]a333ccc22bbfffff	chr4:2935990-2936301(-)$1	311	75	93	24.4385
BBB{EEEEE{BBLLLCCC	chr3:185542677-185542941(-)$1	264	97	115	28.0350
offffff22bb7777777	chr19:56166190-56166469(+)$1	279	90	108	28.9122
gggggggccc========	chrX:106893689-106893973(+)$1	284	97	115	27.7719
4bb:::::::::::::::	chr6:86352753-86352998(-)$1	245	181	199	23.5614
[bb[a!!bb[ccc[ccc!	chr5:137688305-137688582(+)$1	277	134	152	25.1403
gggg]eeeee22bb]bb3	chr19:3062292-3062531(-)$1	239	70	88	24.6140
:::GGGGGGG{AKKBB{D	chr1:213031640-213031908(+)$1	268	114	132	25.4035
e]bbHHHHHHHH}BB:::	chr8:30669835-30670091(-)$1	256	85	103	28.0350
DDDD{A::::::bb[a!!	chr20:57467335-57467628(+)$1	293	14	32	26.5438
ggggggg:::::CCCLLL	chr11:62482472-62482739(-)$1	267	115	133	28.0350
xxxxxxxxxbb]a]a]a]	chr12:54679569-54679839(+)$1	270	69	87	23.7368
hhhhhhhh]eeeeehhhh	chr2:28974727-28975030(+)$1	303	101	119	32.1578
{EEEEEMMMMEEEEEeee	chr6:34664409-34664669(-)$1	260	88	106	31.8070
444===============	chr7:98993974-98994239(-)$1	265	95	113	27.8596
####ccc[a[ddddrrrr	chr14:23791032-23791285(+)$1	253	83	101	25.6666
ii]ccciiiiiiiii[bb	chr11:60658394-60658662(-)$1	268	84	102	29.7894
d4444dddd4444dddd2	chr5:145666606-145666854(+)$1	248	78	96	26.4561
KKGGGGGGG{BBFFFFFF	chr16:447637-447881(+)$1	244	51	69	33.6491
EEEEYYCCC}BBDDDDCC	chr3:101292956-101293225(+)$1	269	233	251	27.4210
]adddd]bb:::::::::	chr17:55333777-55334021(+)$1	244	207	225	33.9999
[dddd!!ffffff####a	chr19:16187710-16187985(+)$1	275	52	70	27.9473
dddd333===========	chr6:15248985-15249254(+)$1	269	77	95	25.1403
>>>>ggggggg]eeeee8	chr5:137088381-137088623(-)$1	242	107	125	23.8245
fffff]a]eeeeeccc]d	chr8:101963101-101963391(-)$1	290	64	82	24.2631
DD::a!!a[bb$$$$$gg	chr20:57467262-57467497(+)$1	235	9	27	30.9298
ffff####a[eeeee[dd	chr1:59247165-59247422(-)$1	257	16	34	37.8596
bbbb]ccc22a]dddd]d	chr11:9466841-9467082(+)$1	241	90	108	23.7368
::ffffff[a[a[fffff	chr16:30535380-30535645(-)$1	265	196	214	25.7543
DKKBB::DDDD{AMMMMB	chr19:34287649-34287898(+)$1	249	5	23	23.9122
ffffff]==========2	chr1:150594888-150595160(-)$1	272	95	113	25.7543
bb22bb]bb]gggggggb	chr5:43290989-43291295(-)$1	306	96	114	25.0526
CC}DDDD______BB___	chr6:29600544-29600832(-)$1	288	254	272	28.0350
FF{CCC{CCC:eeeeenn	chr8:103424365-103424615(-)$1	250	101	119	26.1052
::ffffff[a[eeeee[a	chr19:41119580-41119830(+)$1	250	161	179	24.0000
ccc+++++++++++++++	chr2:191513668-191513927(+)$1	259	51	69	32.8596
IIIIIccc[dddd[a!!f	chr6:33171975-33172229(+)$1	254	101	119	29.2631
f[ccc"""ccc[a[eeee	chr2:54197761-54198043(-)$1	282	88	106	33.2982
:CCCLLLBBA{CCCNNNN	chr6:86352570-86352817(-)$1	247	0	18	23.5614
DD{BBKKDDDD{BB{JJJ	chr9:139743349-139743616(+)$1	267	90	108	28.4736

#DB
((((((((.((((.(..(	chr6:33172052-33172287(+)$1	1	24	42	29.2631
.).).)))))((((((.(	chr16:1749173-1749423(+)$1	1	86	104	25.8421
))).))))((((.(((((	chr1:245026275-245026514(-)$1	1	90	108	26.5438
))))..............	chr7:77166657-77166902(+)$1	1	58	76	27.9473
.(.((((((.........	chr2:97525560-97525833(-)$1	1	66	84	27.2456
))))).............	chr1:155658334-155658602(-)$1	1	89	107	27.7719
((((..((((.(((((((	chr1:28176889-28177164(+)$1	1	109	127	23.5614
).)))))))))))))).)	chr7:127231547-127231822(+)$1	1	125	143	24.8771
...(((..(((..((((.	chr8:25315656-25315901(-)$1	1	48	66	26.8070
))).))).)).)))))).	chr7:5569450-5569692(-)$1	1	182	200	26.5438
))))))))....))((((	chr1:36789178-36789471(+)$1	1	67	85	24.1754
.))))).....).....)	chr6:117996612-117996872(+)$1	1	183	201	31.1052
..((((..........))	chr2:242447651-242447909(-)$1	1	93	111	26.0175
.............).)))	chr3:100428662-100428949(+)$1	1	107	125	30.4035
)).........))).)))	chr15:74702100-74702360(-)$1	1	76	94	23.8245
((.(((..((((..((((	chr2:20550311-20550596(-)$1	1	96	114	28.2105
(((....(..(.......	chr15:79165208-79165491(+)$1	1	116	134	24.1754
).)...)))..))(((((	chr4:2935990-2936301(-)$1	1	75	93	24.4385
(((.(((((.((...(((	chr3:185542677-185542941(-)$1	1	97	115	28.0350
.))))))..)).......	chr19:56166190-56166469(+)$1	1	90	108	28.9122
((((((((((((((((((	chrX:106893689-106893973(+)$1	1	97	115	27.7719
.))...............	chr6:86352753-86352998(-)$1	1	181	199	23.5614
.((.(..((.(((.(((.	chr5:137688305-137688582(+)$1	1	134	152	25.1403
)))).)))))..)).)).	chr19:3062292-3062531(-)$1	1	70	88	24.6140
...(((((((.(..((.(	chr1:213031640-213031908(+)$1	1	114	132	25.4035
).)))))))))).))...	chr8:30669835-30670091(-)$1	1	85	103	28.0350
((((.(......((.(..	chr20:57467335-57467628(+)$1	1	14	32	26.5438
))))))).....(((...	chr11:62482472-62482739(-)$1	1	115	133	28.0350
.........)).).).).	chr12:54679569-54679839(+)$1	1	69	87	23.7368
)))))))).)))))))))	chr2:28974727-28975030(+)$1	1	101	119	32.1578
.(((((....((((((((	chr6:34664409-34664669(-)$1	1	88	106	31.8070
...)))))))))))))))	chr7:98993974-98994239(-)$1	1	95	113	27.8596
....(((.(.((((....	chr14:23791032-23791285(+)$1	1	83	101	25.6666
)).)))(((((((((.((	chr11:60658394-60658662(-)$1	1	84	102	29.7894
)....))))....)))).	chr5:145666606-145666854(+)$1	1	78	96	26.4561
..(((((((.((((((((	chr16:447637-447881(+)$1	1	51	69	33.6491
))))..))).))))))))	chr3:101292956-101293225(+)$1	1	233	251	27.4210
.))))).)).........	chr17:55333777-55334021(+)$1	1	207	225	33.9999
.((((..((((((....(	chr19:16187710-16187985(+)$1	1	52	70	27.9473
))))...)))))))))))	chr6:15248985-15249254(+)$1	1	77	95	25.1403
....))))))).))))).	chr5:137088381-137088623(-)$1	1	107	125	23.8245
))))).).)))))))).)	chr8:101963101-101963391(-)$1	1	64	82	24.2631
((..(..(.((.....((	chr20:57467262-57467497(+)$1	1	9	27	30.9298
((((....(.(((((.((	chr1:59247165-59247422(-)$1	1	16	34	37.8596
)))).)))..).)))).)	chr11:9466841-9467082(+)$1	1	90	108	23.7368
..((((((.(.(.(((((	chr16:30535380-30535645(-)$1	1	196	214	25.7543
(..((..((((.(....(	chr19:34287649-34287898(+)$1	1	5	23	23.9122
)))))).)))))))))).	chr1:150594888-150595160(-)$1	1	95	113	25.7543
))..)).)).))))))))	chr5:43290989-43291295(-)$1	1	96	114	25.0526
)).))))......))...	chr6:29600544-29600832(-)$1	1	254	272	28.0350
((.(((.(((.(((((..	chr8:103424365-103424615(-)$1	1	101	119	26.1052
..((((((.(.(((((.(	chr19:41119580-41119830(+)$1	1	161	179	24.0000
(((...............	chr2:191513668-191513927(+)$1	1	51	69	32.8596
((((((((.((((.(..(	chr6:33171975-33172229(+)$1	1	101	119	29.2631
(.(((...(((.(.((((	chr2:54197761-54198043(-)$1	1	88	106	33.2982
.(((...(((.(((....	chr6:86352570-86352817(-)$1	1	0	18	23.5614
((.((..((((.((.(((	chr9:139743349-139743616(+)$1	1	90	108	28.4736

#PSSM
G : 0.52	g : 0.35	U : 0.10	C : 0.01	
G : 0.43	g : 0.31	U : 0.12	C : 0.05	A : 0.03	u : 0.01	a : 0.01	
G : 0.47	g : 0.19	U : 0.12	c : 0.07	u : 0.07	C : 0.03	A : 0.01	a : 0.01	
G : 0.59	g : 0.31	U : 0.03	C : 0.01	u : 0.01	c : 0.01	
G : 0.63	g : 0.35	A : 0.01	
G : 0.59	g : 0.28	c : 0.03	u : 0.03	A : 0.01	U : 0.01	C : 0.01	
A : 0.42	a : 0.14	U : 0.12	g : 0.08	c : 0.08	G : 0.07	C : 0.03	u : 0.03	
G : 0.52	g : 0.28	U : 0.10	c : 0.05	A : 0.01	u : 0.01	
G : 0.52	g : 0.31	A : 0.08	a : 0.01	u : 0.01	U : 0.01	C : 0.01	
G : 0.56	g : 0.29	A : 0.05	a : 0.03	U : 0.03	c : 0.01	
G : 0.56	g : 0.29	A : 0.05	U : 0.03	u : 0.03	a : 0.01	
G : 0.61	g : 0.31	A : 0.03	c : 0.01	u : 0.01	
A : 0.42	a : 0.21	U : 0.14	c : 0.07	G : 0.07	u : 0.05	C : 0.01	g : 0.01	
G : 0.50	g : 0.35	U : 0.12	A : 0.01	
G : 0.57	g : 0.29	a : 0.03	A : 0.03	c : 0.01	C : 0.01	U : 0.01	
G : 0.63	g : 0.24	a : 0.08	A : 0.03	
G : 0.43	g : 0.29	A : 0.14	U : 0.07	c : 0.03	C : 0.01	
G : 0.56	g : 0.29	U : 0.05	A : 0.03	c : 0.03	C : 0.01	

#score	1557.1228070175443
#seq	57
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF014MZO_POLR2G_transcript_m3_run2.nuc.txt

#NT
cccccug	chr21:47567151-47567421(-)$1	270	90	97	15.0384
ccuccug	chr6:35844301-35844526(-)$1	225	177	184	18.5000
CCUCCUG	chr17:18965300-18965552(+)$1	252	242	249	18.5000
GCUCCUG	chr16:89460571-89460864(-)$1	293	266	273	15.4230
CCCCCUG	chr1:2186242-2186541(+)$1	299	11	18	15.0384
CUUCCUG	chr16:89469764-89470052(-)$1	288	152	159	14.2692
CCCCCUG	chr16:81480760-81481007(+)$1	247	7	14	15.0384
ccuccug	chr16:89537872-89538126(-)$1	254	3	10	18.5000
CCUCCUG	chr7:918435-918722(+)$1	287	160	167	18.5000
ccuccug	chr2:11423267-11423495(-)$1	228	171	178	18.5000
ccuccug	chr5:78913977-78914210(+)$1	233	159	166	18.5000
ACUCCUG	chr7:5460343-5460576(-)$1	233	35	42	14.8461
CCUCCUG	chr20:62516973-62517228(+)$1	255	177	184	18.5000
GCUCCUG	chr17:79957059-79957279(+)$1	220	84	91	15.4230
ccuccug	chr16:87399491-87399742(-)$1	251	210	217	18.5000
CCUCCUG	chr17:79222499-79222763(-)$1	264	2	9	18.5000
UCUCCUG	chr7:5462126-5462405(-)$1	279	115	122	14.8461
ccuccug	chr20:17946168-17946419(-)$1	251	208	215	18.5000
ccuccug	chr16:68144122-68144372(+)$1	250	208	215	18.5000
cuuccug	chr14:39742462-39742719(+)$1	257	181	188	14.2692
GCUCCUG	chr17:79963668-79963934(+)$1	266	198	205	15.4230
CCGCCUG	chr7:5458930-5459185(-)$1	255	237	244	14.6538
ccuccug	chr2:70459852-70460105(-)$1	253	174	181	18.5000
ccuccug	chr12:112027418-112027665(-)$1	247	44	51	18.5000
GCUCCUG	chr17:79958903-79959171(+)$1	268	248	255	15.4230

#otherMatches

#Struct PSSM
oooffff	chr1:2190194-2190447(+)$1	253	125	132	14.6538
f[bb"""	chr21:47567151-47567421(-)$1	270	90	97	15.0384
::::::e	chr6:35844301-35844526(-)$1	225	177	184	18.5000
FCCC:::	chr17:18965300-18965552(+)$1	252	242	249	18.5000
3eeeee]	chr16:89460571-89460864(-)$1	293	266	273	15.4230
oooooog	chr1:2186242-2186541(+)$1	299	11	18	15.0384
D:::ggg	chr16:89469764-89470052(-)$1	288	152	159	14.2692
ffffffc	chr16:81480760-81481007(+)$1	247	7	14	15.0384
GGGGGGe	chr16:89537872-89538126(-)$1	254	3	10	18.5000
::::ccc	chr7:918435-918722(+)$1	287	160	167	18.5000
qqqqqqb	chr2:11423267-11423495(-)$1	228	171	178	18.5000
ddd333d	chr5:78913977-78914210(+)$1	233	159	166	18.5000
lliiiii	chr7:5460343-5460576(-)$1	233	35	42	14.8461
beeeee"	chr20:62516973-62517228(+)$1	255	177	184	18.5000
ffff444	chr17:79957059-79957279(+)$1	220	84	91	15.4230
b55555d	chr16:87399491-87399742(-)$1	251	210	217	18.5000
ffffffn	chr17:79222499-79222763(-)$1	264	2	9	18.5000
d!!iiii	chr7:5462126-5462405(-)$1	279	115	122	14.8461
]ccc::E	chr20:17946168-17946419(-)$1	251	208	215	18.5000
mmmmeee	chr16:68144122-68144372(+)$1	250	208	215	18.5000
dddgggg	chr14:39742462-39742719(+)$1	257	181	188	14.2692
iiiilll	chr17:79963668-79963934(+)$1	266	198	205	15.4230
d]dddd]	chr7:5458930-5459185(-)$1	255	237	244	14.6538
5555ccc	chr2:70459852-70460105(-)$1	253	174	181	18.5000
777ffff	chr12:112027418-112027665(-)$1	247	44	51	18.5000
hhmmmmh	chr17:79958903-79959171(+)$1	268	248	255	15.4230

#DB
...))))	chr1:2190194-2190447(+)$1	1	125	132	14.6538
(.((...	chr21:47567151-47567421(-)$1	1	90	97	15.0384
......(	chr6:35844301-35844526(-)$1	1	177	184	18.5000
))))...	chr17:18965300-18965552(+)$1	1	242	249	18.5000
.))))).	chr16:89460571-89460864(-)$1	1	266	273	15.4230
......)	chr1:2186242-2186541(+)$1	1	11	18	15.0384
(...(((	chr16:89469764-89470052(-)$1	1	152	159	14.2692
(((((((	chr16:81480760-81481007(+)$1	1	7	14	15.0384
(((((((	chr16:89537872-89538126(-)$1	1	3	10	18.5000
....(((	chr7:918435-918722(+)$1	1	160	167	18.5000
......)	chr2:11423267-11423495(-)$1	1	171	178	18.5000
)))...)	chr5:78913977-78914210(+)$1	1	159	166	18.5000
..)))))	chr7:5460343-5460576(-)$1	1	35	42	14.8461
)(((((.	chr20:62516973-62517228(+)$1	1	177	184	18.5000
))))...	chr17:79957059-79957279(+)$1	1	84	91	15.4230
).....)	chr16:87399491-87399742(-)$1	1	210	217	18.5000
((((((.	chr17:79222499-79222763(-)$1	1	2	9	18.5000
(..((((	chr7:5462126-5462405(-)$1	1	115	122	14.8461
.)))..)	chr20:17946168-17946419(-)$1	1	208	215	18.5000
....)))	chr16:68144122-68144372(+)$1	1	208	215	18.5000
)))))))	chr14:39742462-39742719(+)$1	1	181	188	14.2692
((((...	chr17:79963668-79963934(+)$1	1	198	205	15.4230
).)))).	chr7:5458930-5459185(-)$1	1	237	244	14.6538
....)))	chr2:70459852-70460105(-)$1	1	174	181	18.5000
...))))	chr12:112027418-112027665(-)$1	1	44	51	18.5000
((....)	chr17:79958903-79959171(+)$1	1	248	255	15.4230

#PSSM
c : 0.42	C : 0.34	G : 0.15	A : 0.03	U : 0.03	
C : 0.53	c : 0.38	U : 0.03	u : 0.03	
U : 0.42	u : 0.38	C : 0.07	A : 0.03	c : 0.03	G : 0.03	
C : 0.57	c : 0.42	
C : 0.57	c : 0.42	
U : 0.57	u : 0.42	
G : 0.57	g : 0.42	

#score	434.8461538461538
#seq	26
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_transcript_m1_run1.nuc.txt

#NT
UCCUG	chr19:11241855-11242102(+)$1	247	53	58	15.0000
UCCUG	chr2:128903277-128903547(+)$1	270	223	228	15.0000
UCCUG	chr17:80195019-80195281(+)$1	262	102	107	15.0000
UCCUG	chr10:135165653-135166032(+)$1	379	139	144	15.0000
UCCUG	chr19:10394055-10394313(+)$1	258	93	98	15.0000
UCCUG	chr7:100775068-100775322(+)$1	254	54	59	15.0000
UCCUG	chr1:43395447-43395661(-)$1	214	76	81	15.0000
UCCUG	chr17:7077356-7077583(-)$1	227	112	117	15.0000
UCCUG	chr20:30738565-30738778(+)$1	213	162	167	15.0000
UCCUG	chr7:56142176-56142457(+)$1	281	89	94	15.0000
UCCUG	chr14:95081230-95081451(+)$1	221	164	169	15.0000
UCCUG	chr19:11453403-11453683(-)$1	280	137	142	15.0000
UCCUG	chr3:127788287-127788537(+)$1	250	84	89	15.0000
UCCUG	chr5:176764329-176764565(-)$1	236	167	172	15.0000
UCCUG	chr6:43097958-43098170(+)$1	212	111	116	15.0000
UCCUG	chr3:133475580-133475816(+)$1	236	58	63	15.0000
UCCUG	chr19:58863767-58863984(-)$1	217	20	25	15.0000
UCCUG	chr1:230838913-230839121(-)$1	208	23	28	15.0000
UCCUG	chr1:169510840-169511080(-)$1	240	43	48	15.0000
UCCUG	chr7:148708930-148709182(-)$1	252	161	166	15.0000
UCCUG	chr19:45153009-45153346(+)$1	337	227	232	15.0000
UCCUG	chr9:124079378-124079594(+)$1	216	76	81	15.0000
UCCUG	chr19:13051021-13051248(+)$1	227	147	152	15.0000
UCCUG	chr3:14176557-14176772(+)$1	215	35	40	15.0000
UCCUG	chr5:135381938-135382184(+)$1	246	77	82	15.0000
UCCUG	chr16:57416073-57416338(+)$1	265	53	58	15.0000
UCCUG	chr3:186299067-186299400(+)$1	333	124	129	15.0000
UCCUG	chr1:19564448-19564694(-)$1	246	212	217	15.0000
UCCUG	chr11:71146622-71146879(-)$1	257	49	54	15.0000
UCCUG	chr4:166300497-166300780(+)$1	283	138	143	15.0000
UCCUG	chr10:7776878-7777105(+)$1	227	53	58	15.0000
UCCUG	chr19:12991515-12991764(-)$1	249	77	82	15.0000
UCCUG	chr9:124064176-124064418(+)$1	242	209	214	15.0000
UCCUG	chr19:45381580-45381832(+)$1	252	4	9	15.0000
UCCUG	chr19:19230794-19231093(-)$1	299	109	114	15.0000
UCCUG	chr14:103394994-103395214(+)$1	220	135	140	15.0000
UCCUG	chr14:95080986-95081219(+)$1	233	48	53	15.0000
UCCUG	chr6:31910646-31910881(+)$1	235	27	32	15.0000
UCCUG	chr19:48833540-48833837(+)$1	297	68	73	15.0000
UCCUG	chr19:35758282-35758586(+)$1	304	120	125	15.0000
UCCUG	chr11:61572090-61572336(-)$1	246	61	66	15.0000
UCCUG	chr12:125271851-125272063(-)$1	212	86	91	15.0000
UCCUG	chr2:216229528-216229746(-)$1	218	118	123	15.0000
UCCUG	chr2:187532311-187532579(+)$1	268	95	100	15.0000
UCCUG	chr1:19565627-19565886(-)$1	259	202	207	15.0000
UCCUG	chr12:71977556-71977803(+)$1	247	191	196	15.0000
UCCUG	chr19:18498995-18499198(+)$1	203	45	50	15.0000
UCCUG	chr3:183960219-183960505(-)$1	286	69	74	15.0000
UCCUG	chr13:24233088-24233306(+)$1	218	86	91	15.0000
UCCUG	chr11:88029199-88029471(-)$1	272	41	46	15.0000
uccug	chr17:71220837-71221225(-)$1	388	45	50	15.0000
UCCUG	chr2:220080730-220080974(-)$1	244	6	11	15.0000
UCCUG	chr2:216262407-216262614(-)$1	207	158	163	15.0000
UCCUG	chr12:58109865-58110076(+)$1	211	177	182	15.0000

#otherMatches

#Struct PSSM
eeeFF	chr14:95053861-95054136(+)$1	275	109	114	15.0000
DDDDN	chr19:11241855-11242102(+)$1	247	53	58	15.0000
HHHHH	chr2:128903277-128903547(+)$1	270	223	228	15.0000
]eeee	chr17:80195019-80195281(+)$1	262	102	107	15.0000
EEE}E	chr10:135165653-135166032(+)$1	379	139	144	15.0000
ddddl	chr19:10394055-10394313(+)$1	258	93	98	15.0000
:::ee	chr7:100775068-100775322(+)$1	254	54	59	15.0000
:::cc	chr1:43395447-43395661(-)$1	214	76	81	15.0000
ffffe	chr17:7077356-7077583(-)$1	227	112	117	15.0000
ffff2	chr20:30738565-30738778(+)$1	213	162	167	15.0000
%%%%d	chr7:56142176-56142457(+)$1	281	89	94	15.0000
ggggg	chr14:95081230-95081451(+)$1	221	164	169	15.0000
dddqq	chr19:11453403-11453683(-)$1	280	137	142	15.0000
dd]ff	chr3:127788287-127788537(+)$1	250	84	89	15.0000
ggccc	chr5:176764329-176764565(-)$1	236	167	172	15.0000
22ccc	chr6:43097958-43098170(+)$1	212	111	116	15.0000
CCC{E	chr3:133475580-133475816(+)$1	236	58	63	15.0000
SSSSS	chr19:58863767-58863984(-)$1	217	20	25	15.0000
ppddd	chr1:230838913-230839121(-)$1	208	23	28	15.0000
&hhhh	chr1:169510840-169511080(-)$1	240	43	48	15.0000
mdddd	chr7:148708930-148709182(-)$1	252	161	166	15.0000
ccc[a	chr19:45153009-45153346(+)$1	337	227	232	15.0000
:ccc"	chr9:124079378-124079594(+)$1	216	76	81	15.0000
ddddz	chr19:13051021-13051248(+)$1	227	147	152	15.0000
!bbpp	chr3:14176557-14176772(+)$1	215	35	40	15.0000
mmmmd	chr5:135381938-135382184(+)$1	246	77	82	15.0000
HHHHH	chr16:57416073-57416338(+)$1	265	53	58	15.0000
33eee	chr3:186299067-186299400(+)$1	333	124	129	15.0000
B}ACC	chr1:19564448-19564694(-)$1	246	212	217	15.0000
b]a]e	chr11:71146622-71146879(-)$1	257	49	54	15.0000
mgggg	chr4:166300497-166300780(+)$1	283	138	143	15.0000
HHHHH	chr10:7776878-7777105(+)$1	227	53	58	15.0000
:::bb	chr19:12991515-12991764(-)$1	249	77	82	15.0000
cccff	chr9:124064176-124064418(+)$1	242	209	214	15.0000
HHHHC	chr19:45381580-45381832(+)$1	252	4	9	15.0000
____F	chr19:19230794-19231093(-)$1	299	109	114	15.0000
7777a	chr14:103394994-103395214(+)$1	220	135	140	15.0000
f"""g	chr14:95080986-95081219(+)$1	233	48	53	15.0000
ggggg	chr6:31910646-31910881(+)$1	235	27	32	15.0000
DDKKB	chr19:48833540-48833837(+)$1	297	68	73	15.0000
EEEE{	chr19:35758282-35758586(+)$1	304	120	125	15.0000
ppppp	chr11:61572090-61572336(-)$1	246	61	66	15.0000
ggggg	chr12:125271851-125272063(-)$1	212	86	91	15.0000
eeeeF	chr2:216229528-216229746(-)$1	218	118	123	15.0000
####c	chr2:187532311-187532579(+)$1	268	95	100	15.0000
hhhhh	chr1:19565627-19565886(-)$1	259	202	207	15.0000
::eee	chr12:71977556-71977803(+)$1	247	191	196	15.0000
!dddd	chr19:18498995-18499198(+)$1	203	45	50	15.0000
"""ee	chr3:183960219-183960505(-)$1	286	69	74	15.0000
mmmmd	chr13:24233088-24233306(+)$1	218	86	91	15.0000
::::e	chr11:88029199-88029471(-)$1	272	41	46	15.0000
b333a	chr17:71220837-71221225(-)$1	388	45	50	15.0000
:eeee	chr2:220080730-220080974(-)$1	244	6	11	15.0000
dddqq	chr2:216262407-216262614(-)$1	207	158	163	15.0000
ccooo	chr12:58109865-58110076(+)$1	211	177	182	15.0000

#DB
)))((	chr14:95053861-95054136(+)$1	1	109	114	15.0000
((((.	chr19:11241855-11242102(+)$1	1	53	58	15.0000
)))))	chr2:128903277-128903547(+)$1	1	223	228	15.0000
.))))	chr17:80195019-80195281(+)$1	1	102	107	15.0000
))).)	chr10:135165653-135166032(+)$1	1	139	144	15.0000
((((.	chr19:10394055-10394313(+)$1	1	93	98	15.0000
...((	chr7:100775068-100775322(+)$1	1	54	59	15.0000
...((	chr1:43395447-43395661(-)$1	1	76	81	15.0000
))))(	chr17:7077356-7077583(-)$1	1	112	117	15.0000
)))).	chr20:30738565-30738778(+)$1	1	162	167	15.0000
....(	chr7:56142176-56142457(+)$1	1	89	94	15.0000
)))))	chr14:95081230-95081451(+)$1	1	164	169	15.0000
(((..	chr19:11453403-11453683(-)$1	1	137	142	15.0000
)).))	chr3:127788287-127788537(+)$1	1	84	89	15.0000
(((((	chr5:176764329-176764565(-)$1	1	167	172	15.0000
..)))	chr6:43097958-43098170(+)$1	1	111	116	15.0000
(((.(	chr3:133475580-133475816(+)$1	1	58	63	15.0000
.....	chr19:58863767-58863984(-)$1	1	20	25	15.0000
..)))	chr1:230838913-230839121(-)$1	1	23	28	15.0000
.((((	chr1:169510840-169511080(-)$1	1	43	48	15.0000
.))))	chr7:148708930-148709182(-)$1	1	161	166	15.0000
(((.(	chr19:45153009-45153346(+)$1	1	227	232	15.0000
.(((.	chr9:124079378-124079594(+)$1	1	76	81	15.0000
((((.	chr19:13051021-13051248(+)$1	1	147	152	15.0000
.((..	chr3:14176557-14176772(+)$1	1	35	40	15.0000
....)	chr5:135381938-135382184(+)$1	1	77	82	15.0000
)))))	chr16:57416073-57416338(+)$1	1	53	58	15.0000
..)))	chr3:186299067-186299400(+)$1	1	124	129	15.0000
).)))	chr1:19564448-19564694(-)$1	1	212	217	15.0000
).).)	chr11:71146622-71146879(-)$1	1	49	54	15.0000
.))))	chr4:166300497-166300780(+)$1	1	138	143	15.0000
(((((	chr10:7776878-7777105(+)$1	1	53	58	15.0000
...((	chr19:12991515-12991764(-)$1	1	77	82	15.0000
)))))	chr9:124064176-124064418(+)$1	1	209	214	15.0000
(((((	chr19:45381580-45381832(+)$1	1	4	9	15.0000
....)	chr19:19230794-19231093(-)$1	1	109	114	15.0000
....)	chr14:103394994-103395214(+)$1	1	135	140	15.0000
(...(	chr14:95080986-95081219(+)$1	1	48	53	15.0000
(((((	chr6:31910646-31910881(+)$1	1	27	32	15.0000
((..(	chr19:48833540-48833837(+)$1	1	68	73	15.0000
((((.	chr19:35758282-35758586(+)$1	1	120	125	15.0000
.....	chr11:61572090-61572336(-)$1	1	61	66	15.0000
(((((	chr12:125271851-125272063(-)$1	1	86	91	15.0000
))))(	chr2:216229528-216229746(-)$1	1	118	123	15.0000
....(	chr2:187532311-187532579(+)$1	1	95	100	15.0000
(((((	chr1:19565627-19565886(-)$1	1	202	207	15.0000
..(((	chr12:71977556-71977803(+)$1	1	191	196	15.0000
.((((	chr19:18498995-18499198(+)$1	1	45	50	15.0000
...((	chr3:183960219-183960505(-)$1	1	69	74	15.0000
....)	chr13:24233088-24233306(+)$1	1	86	91	15.0000
....(	chr11:88029199-88029471(-)$1	1	41	46	15.0000
)...)	chr17:71220837-71221225(-)$1	1	45	50	15.0000
.((((	chr2:220080730-220080974(-)$1	1	6	11	15.0000
(((..	chr2:216262407-216262614(-)$1	1	158	163	15.0000
((...	chr12:58109865-58110076(+)$1	1	177	182	15.0000

#PSSM
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	825.0000000000001
#seq	55
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_CDS_m2_run2.nuc.txt

#NT
GCGGCCG	chr1:161719493-161719838(+)$1	345	215	222	17.6666
GCGGCCG	chr2:86426491-86426758(+)$1	267	97	104	17.6666
GCGGCAG	chr1:28562552-28562845(+)$1	293	107	114	13.7500
GCGGCCG	chr8:125551374-125551581(+)$1	207	28	35	17.6666
GCGGCAG	chr3:48481723-48481939(+)$1	216	50	57	13.7500
GCGGCUG	chr8:48872432-48872686(-)$1	254	38	45	13.6666
GCCGCCG	chr6:153303961-153304268(-)$1	307	249	256	13.7500
gccgccg	chr1:224370956-224371216(+)$1	260	2	9	13.7500
GCGGCCG	chr5:162886948-162887204(-)$1	256	121	128	17.6666
GCGGCCG	chr3:47866433-47866803(+)$1	370	99	106	17.6666
gcggccg	chr13:73301575-73301874(-)$1	299	167	174	17.6666
GCGGCGG	chr12:96252740-96252955(+)$1	215	60	67	13.9166
gcggccc	chr7:6414234-6414503(+)$1	269	11	18	14.2500
GGGGCCG	chr11:64085689-64085954(+)$1	265	55	62	13.5833
GCGGCGG	chr2:231729592-231729845(+)$1	253	80	87	13.9166
GCGGCCG	chr2:238875625-238875875(+)$1	250	8	15	17.6666
GCGGCCG	chr1:68962534-68962888(-)$1	354	144	151	17.6666
gcggccg	chr2:219082099-219082368(+)$1	269	157	164	17.6666
GCGGCCU	chr17:3571679-3571951(-)$1	272	42	49	13.9166
GCUGCCG	chr14:21458285-21458591(+)$1	306	198	205	13.5833
GCGGCCG	chr1:115323039-115323376(-)$1	337	217	224	17.6666
GCGGCGG	chr4:184365711-184366082(+)$1	371	30	37	13.9166
GCGGCCU	chr10:126480239-126480503(-)$1	264	3	10	13.9166
GCGGCCG	chr8:29940321-29940595(-)$1	274	154	161	17.6666
GUGGCCG	chr5:81574038-81574245(-)$1	207	117	124	13.4166
GCUGCCG	chr11:86013389-86013620(+)$1	231	89	96	13.5833
GCGGCCC	chr13:22178095-22178396(-)$1	301	232	239	14.2500
GCCGCCG	chr10:6131027-6131257(+)$1	230	28	35	13.7500
GCGGCCG	chr9:108456839-108457089(+)$1	250	9	16	17.6666
GGGGCCG	chrX:153714473-153714721(-)$1	248	4	11	13.5833
GCGGCCG	chr14:50319312-50319591(-)$1	279	18	25	17.6666
GCGGCCC	chr4:6642448-6642725(+)$1	277	143	150	14.2500
gcggccg	chr17:79679324-79679570(+)$1	246	62	69	17.6666
GCGGCCA	chr9:37592373-37592598(-)$1	225	13	20	13.8333
GCGGCCC	chr7:87849188-87849469(-)$1	281	41	48	14.2500
GCGGCCG	chr21:30445751-30445984(-)$1	233	183	190	17.6666
gcggccg	chr10:22605249-22605588(+)$1	339	27	34	17.6666
GCGGCCC	chr1:47799483-47799759(+)$1	276	258	265	14.2500
GCGGCCC	chr20:57607174-57607377(-)$1	203	188	195	14.2500
GCGGCGG	chr4:57333671-57334011(+)$1	340	137	144	13.9166
GGGGCCG	chr17:36909302-36909506(+)$1	204	121	128	13.5833
GCGGCCG	chr12:108956280-108956610(+)$1	330	290	297	17.6666
GCGGCCG	chr14:77924378-77924637(+)$1	259	45	52	17.6666
GCGGCAG	chr14:61201393-61201732(+)$1	339	285	292	13.7500
GAGGCCG	chr2:106015229-106015499(-)$1	270	105	112	13.3333
GCGGCCA	chr17:56769879-56770139(+)$1	260	14	21	13.8333
GCGGCGG	chr8:146277923-146278220(+)$1	297	75	82	13.9166
GCGGCCU	chr17:53828391-53828657(+)$1	266	32	39	13.9166
GCUGCCG	chr7:103848238-103848513(-)$1	275	2	9	13.5833
GGGGCCG	chr19:47353919-47354194(-)$1	275	141	148	13.5833
GCGGCCG	chr16:128202-128433(+)$1	231	193	200	17.6666
GCGCCCG	chr21:40555202-40555484(-)$1	282	8	15	13.1666
GCGCCCG	chr14:101193330-101193573(+)$1	243	32	39	13.1666
GCGGCUG	chr15:67546805-67547028(-)$1	223	23	30	13.6666
GCGCCCG	chr5:118604469-118604704(+)$1	235	150	157	13.1666
GUGGCCG	chr2:27294129-27294374(-)$1	245	125	132	13.4166
GCCGCCG	chr5:132202460-132202682(+)$1	222	101	108	13.7500
gcggccc	chr19:47551587-47551854(-)$1	267	59	66	14.2500
GCCGCCG	chr10:102289449-102289715(-)$1	266	52	59	13.7500

#otherMatches

#Struct PSSM
eeeee[c	chr22:19434895-19435135(-)$1	240	26	33	17.6666
JJJJJJJ	chr1:161719493-161719838(+)$1	345	215	222	17.6666
eeccc[e	chr2:86426491-86426758(+)$1	267	97	104	17.6666
!!cccoo	chr1:28562552-28562845(+)$1	293	107	114	13.7500
qq=====	chr8:125551374-125551581(+)$1	207	28	35	17.6666
hhhhhh[	chr3:48481723-48481939(+)$1	216	50	57	13.7500
ddddfff	chr8:48872432-48872686(-)$1	254	38	45	13.6666
c55555g	chr6:153303961-153304268(-)$1	307	249	256	13.7500
:CCC{DD	chr1:224370956-224371216(+)$1	260	2	9	13.7500
dddd###	chr5:162886948-162887204(-)$1	256	121	128	17.6666
[dddd[e	chr3:47866433-47866803(+)$1	370	99	106	17.6666
mmmeeee	chr13:73301575-73301874(-)$1	299	167	174	17.6666
cc[ffff	chr12:96252740-96252955(+)$1	215	60	67	13.9166
KEEEEED	chr7:6414234-6414503(+)$1	269	11	18	14.2500
[======	chr11:64085689-64085954(+)$1	265	55	62	13.5833
ccc]fff	chr2:231729592-231729845(+)$1	253	80	87	13.9166
ddddqqq	chr2:238875625-238875875(+)$1	250	8	15	17.6666
GEEEEED	chr1:68962534-68962888(-)$1	354	144	151	17.6666
[eeeee[	chr2:219082099-219082368(+)$1	269	157	164	17.6666
E{BB:::	chr17:3571679-3571951(-)$1	272	42	49	13.9166
bb[eeee	chr14:21458285-21458591(+)$1	306	198	205	13.5833
cccgggg	chr1:115323039-115323376(-)$1	337	217	224	17.6666
dEEEEEL	chr4:184365711-184366082(+)$1	371	30	37	13.9166
!eeeee[	chr10:126480239-126480503(-)$1	264	3	10	13.9166
IIIIIIe	chr8:29940321-29940595(-)$1	274	154	161	17.6666
ccc[bbp	chr5:81574038-81574245(-)$1	207	117	124	13.4166
ddd:iii	chr11:86013389-86013620(+)$1	231	89	96	13.5833
bb[bbdd	chr13:22178095-22178396(-)$1	301	232	239	14.2500
!eeeee[	chr10:6131027-6131257(+)$1	230	28	35	13.7500
KEEEEEE	chr9:108456839-108457089(+)$1	250	9	16	17.6666
fffff""	chrX:153714473-153714721(-)$1	248	4	11	13.5833
EEDDDD:	chr14:50319312-50319591(-)$1	279	18	25	17.6666
[ccclll	chr4:6642448-6642725(+)$1	277	143	150	14.2500
eee]eee	chr17:79679324-79679570(+)$1	246	62	69	17.6666
=="""bb	chr9:37592373-37592598(-)$1	225	13	20	13.8333
!a[gggg	chr7:87849188-87849469(-)$1	281	41	48	14.2500
f:HHHHH	chr21:30445751-30445984(-)$1	233	183	190	17.6666
gg[bbcc	chr10:22605249-22605588(+)$1	339	27	34	17.6666
ddEEEEE	chr1:47799483-47799759(+)$1	276	258	265	14.2500
]ccc555	chr20:57607174-57607377(-)$1	203	188	195	14.2500
f]eeeee	chr4:57333671-57334011(+)$1	340	137	144	13.9166
eeeee:b	chr17:36909302-36909506(+)$1	204	121	128	13.5833
IIIIYYC	chr12:108956280-108956610(+)$1	330	290	297	17.6666
ffA{HHH	chr14:77924378-77924637(+)$1	259	45	52	17.6666
DDEEEEE	chr14:61201393-61201732(+)$1	339	285	292	13.7500
[eeeeem	chr2:106015229-106015499(-)$1	270	105	112	13.3333
eeeeell	chr17:56769879-56770139(+)$1	260	14	21	13.8333
A{CCCdd	chr8:146277923-146278220(+)$1	297	75	82	13.9166
ggggbb[	chr17:53828391-53828657(+)$1	266	32	39	13.9166
eee[eee	chr7:103848238-103848513(-)$1	275	2	9	13.5833
b]ccc]f	chr19:47353919-47354194(-)$1	275	141	148	13.5833
}JJJJJJ	chr16:128202-128433(+)$1	231	193	200	17.6666
iibb!!d	chr21:40555202-40555484(-)$1	282	8	15	13.1666
ccc]fff	chr14:101193330-101193573(+)$1	243	32	39	13.1666
ggggggg	chr15:67546805-67547028(-)$1	223	23	30	13.6666
hhhh^^^	chr5:118604469-118604704(+)$1	235	150	157	13.1666
dddd444	chr2:27294129-27294374(-)$1	245	125	132	13.4166
ddccc[c	chr5:132202460-132202682(+)$1	222	101	108	13.7500
cccgggg	chr19:47551587-47551854(-)$1	267	59	66	14.2500
hhhhhhh	chr10:102289449-102289715(-)$1	266	52	59	13.7500

#DB
(((((.(	chr22:19434895-19435135(-)$1	1	26	33	17.6666
)))))))	chr1:161719493-161719838(+)$1	1	215	222	17.6666
))(((.(	chr2:86426491-86426758(+)$1	1	97	104	17.6666
..(((..	chr1:28562552-28562845(+)$1	1	107	114	13.7500
..)))))	chr8:125551374-125551581(+)$1	1	28	35	17.6666
((((((.	chr3:48481723-48481939(+)$1	1	50	57	13.7500
(((((((	chr8:48872432-48872686(-)$1	1	38	45	13.6666
).....)	chr6:153303961-153304268(-)$1	1	249	256	13.7500
.(((.((	chr1:224370956-224371216(+)$1	1	2	9	13.7500
((((...	chr5:162886948-162887204(-)$1	1	121	128	17.6666
.((((.(	chr3:47866433-47866803(+)$1	1	99	106	17.6666
...))))	chr13:73301575-73301874(-)$1	1	167	174	17.6666
((.((((	chr12:96252740-96252955(+)$1	1	60	67	13.9166
.((((((	chr7:6414234-6414503(+)$1	1	11	18	14.2500
.((((((	chr11:64085689-64085954(+)$1	1	55	62	13.5833
))).)))	chr2:231729592-231729845(+)$1	1	80	87	13.9166
((((...	chr2:238875625-238875875(+)$1	1	8	15	17.6666
(((((((	chr1:68962534-68962888(-)$1	1	144	151	17.6666
.(((((.	chr2:219082099-219082368(+)$1	1	157	164	17.6666
(.((...	chr17:3571679-3571951(-)$1	1	42	49	13.9166
((.((((	chr14:21458285-21458591(+)$1	1	198	205	13.5833
)))((((	chr1:115323039-115323376(-)$1	1	217	224	17.6666
)(((((.	chr4:184365711-184366082(+)$1	1	30	37	13.9166
.(((((.	chr10:126480239-126480503(-)$1	1	3	10	13.9166
))))))(	chr8:29940321-29940595(-)$1	1	154	161	17.6666
(((.((.	chr5:81574038-81574245(-)$1	1	117	124	13.4166
))).(((	chr11:86013389-86013620(+)$1	1	89	96	13.5833
((.((((	chr13:22178095-22178396(-)$1	1	232	239	14.2500
.(((((.	chr10:6131027-6131257(+)$1	1	28	35	13.7500
.((((((	chr9:108456839-108457089(+)$1	1	9	16	17.6666
(((((..	chrX:153714473-153714721(-)$1	1	4	11	13.5833
((((((.	chr14:50319312-50319591(-)$1	1	18	25	17.6666
.(((...	chr4:6642448-6642725(+)$1	1	143	150	14.2500
))).)))	chr17:79679324-79679570(+)$1	1	62	69	17.6666
((...((	chr9:37592373-37592598(-)$1	1	13	20	13.8333
.(.((((	chr7:87849188-87849469(-)$1	1	41	48	14.2500
).)))))	chr21:30445751-30445984(-)$1	1	183	190	17.6666
((.((((	chr10:22605249-22605588(+)$1	1	27	34	17.6666
)))))))	chr1:47799483-47799759(+)$1	1	258	265	14.2500
.)))...	chr20:57607174-57607377(-)$1	1	188	195	14.2500
).)))))	chr4:57333671-57334011(+)$1	1	137	144	13.9166
))))).(	chr17:36909302-36909506(+)$1	1	121	128	13.5833
))))..)	chr12:108956280-108956610(+)$1	1	290	297	17.6666
))(.(((	chr14:77924378-77924637(+)$1	1	45	52	17.6666
)))))))	chr14:61201393-61201732(+)$1	1	285	292	13.7500
.(((((.	chr2:106015229-106015499(-)$1	1	105	112	13.3333
(((((..	chr17:56769879-56770139(+)$1	1	14	21	13.8333
(.(((((	chr8:146277923-146278220(+)$1	1	75	82	13.9166
((((((.	chr17:53828391-53828657(+)$1	1	32	39	13.9166
(((.(((	chr7:103848238-103848513(-)$1	1	2	9	13.5833
).))).)	chr19:47353919-47354194(-)$1	1	141	148	13.5833
.))))))	chr16:128202-128433(+)$1	1	193	200	17.6666
((((..(	chr21:40555202-40555484(-)$1	1	8	15	13.1666
))).)))	chr14:101193330-101193573(+)$1	1	32	39	13.1666
(((((((	chr15:67546805-67547028(-)$1	1	23	30	13.6666
((((...	chr5:118604469-118604704(+)$1	1	150	157	13.1666
))))...	chr2:27294129-27294374(-)$1	1	125	132	13.4166
(((((.(	chr5:132202460-132202682(+)$1	1	101	108	13.7500
(((((((	chr19:47551587-47551854(-)$1	1	59	66	14.2500
(((((((	chr10:102289449-102289715(-)$1	1	52	59	13.7500

#PSSM
G : 0.86	g : 0.13	
C : 0.75	c : 0.13	G : 0.06	U : 0.03	A : 0.01	
G : 0.75	g : 0.11	C : 0.06	U : 0.05	c : 0.01	
G : 0.81	g : 0.13	C : 0.05	
C : 0.86	c : 0.13	
C : 0.70	c : 0.13	G : 0.08	A : 0.05	U : 0.03	
G : 0.70	g : 0.09	C : 0.08	U : 0.05	c : 0.03	A : 0.03	

#score	904.166666666667
#seq	60
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_transcript_m3_run2.nuc.txt

#NT
gaaaa	chr7:158244370-158244646(-)$1	276	75	80	14.9999
GAAAA	chr2:71649852-71650094(+)$1	242	100	105	14.9999
GAAAA	chr5:159463610-159463879(+)$1	269	1	6	14.9999
GAAAA	chr1:202742182-202742462(-)$1	280	89	94	14.9999
GAAAA	chr11:43413332-43413632(+)$1	300	246	251	14.9999
GAAAA	chr1:153791166-153791499(-)$1	333	272	277	14.9999
GAAAA	chr17:1265127-1265382(-)$1	255	207	212	14.9999
GAAAA	chr3:179109693-179109969(+)$1	276	94	99	14.9999
GAAAA	chr12:123808156-123808413(-)$1	257	57	62	14.9999
GAAAA	chr2:198352496-198352726(-)$1	230	51	56	14.9999
GAAAA	chr8:12595405-12595650(-)$1	245	21	26	14.9999
GAAAA	chr2:54028463-54028752(+)$1	289	38	43	14.9999
GAAAA	chr6:82936807-82937075(-)$1	268	204	209	14.9999
GAAAA	chr14:31856232-31856464(-)$1	232	72	77	14.9999
GAAAA	chr12:9809516-9809809(+)$1	293	77	82	14.9999
GAAAA	chr2:71630951-71631221(+)$1	270	67	72	14.9999
GAAAA	chr15:49437061-49437315(-)$1	254	82	87	14.9999
GAAAA	chr11:129990563-129990813(+)$1	250	72	77	14.9999
GAAAA	chr2:128528250-128528468(-)$1	218	46	51	14.9999
GAAAA	chr10:32317255-32317464(-)$1	209	24	29	14.9999
GAAAA	chr21:40574191-40574469(-)$1	278	178	183	14.9999
GAAAA	chr12:110566646-110566951(+)$1	305	37	42	14.9999
GAAAA	chr5:36975889-36976138(+)$1	249	81	86	14.9999
GAAAA	chr6:119332368-119332676(-)$1	308	152	157	14.9999
GAAAA	chr2:109086663-109086898(+)$1	235	19	24	14.9999
GAAAA	chrX:54014108-54014439(-)$1	331	65	70	14.9999
GAAAA	chr2:162081082-162081330(+)$1	248	241	246	14.9999
GAAAA	chr21:38512760-38512981(+)$1	221	115	120	14.9999
GAAAA	chr7:5764860-5765093(-)$1	233	76	81	14.9999
GAAAA	chr16:27492299-27492534(-)$1	235	64	69	14.9999
GAAAA	chr10:63850520-63850752(+)$1	232	115	120	14.9999
GAAAA	chr2:96520994-96521261(-)$1	267	74	79	14.9999
GAAAA	chr2:32865247-32865481(+)$1	234	6	11	14.9999
GAAAA	chr8:381240-381511(+)$1	271	40	45	14.9999
GAAAA	chr1:174188164-174188534(+)$1	370	251	256	14.9999
GAAAA	chr8:101299627-101299836(-)$1	209	28	33	14.9999
GAAAA	chr17:56083216-56083434(-)$1	218	77	82	14.9999
GAAAA	chr9:107564237-107564466(-)$1	229	159	164	14.9999
GAAAA	chr11:47767794-47768031(-)$1	237	206	211	14.9999
GAAAA	chr10:27371633-27371859(-)$1	226	173	178	14.9999
GAAAA	chr3:37343695-37343912(+)$1	217	109	114	14.9999
GAAAA	chr17:49365297-49365544(+)$1	247	240	245	14.9999
GAAAA	chr1:62455869-62456103(+)$1	234	26	31	14.9999
GAAAA	chr11:108173572-108173847(+)$1	275	34	39	14.9999
GAAAA	chr16:24990191-24990427(-)$1	236	107	112	14.9999
GAAAA	chr9:6814556-6814786(+)$1	230	17	22	14.9999
GAAAA	chr2:63058135-63058360(+)$1	225	136	141	14.9999
GAAAA	chr6:7582926-7583136(+)$1	210	19	24	14.9999
GAAAA	chr3:121416855-121417111(-)$1	256	186	191	14.9999
GAAAA	chr3:73096359-73096607(+)$1	248	124	129	14.9999
GAAAA	chr3:105243186-105243455(+)$1	269	51	56	14.9999
GAAAA	chr18:13731601-13731868(+)$1	267	14	19	14.9999
GAAAA	chr5:109155818-109156112(+)$1	294	282	287	14.9999
GAAAA	chr11:77387923-77388146(-)$1	223	114	119	14.9999
GAAAA	chr18:72345635-72345890(+)$1	255	77	82	14.9999
GAAAA	chr9:131367475-131367718(+)$1	243	168	173	14.9999
GAAAA	chr4:13578936-13579211(-)$1	275	112	117	14.9999
GAAAA	chr11:72632773-72632989(-)$1	216	102	107	14.9999
GAAAA	chr10:114190523-114190766(-)$1	243	131	136	14.9999
GAAAA	chr6:56417385-56417629(-)$1	244	153	158	14.9999
GAAAA	chr12:75893580-75893832(-)$1	252	139	144	14.9999
GAAAA	chr12:459823-460046(-)$1	223	122	127	14.9999
GAAAA	chr15:59185377-59185662(-)$1	285	57	62	14.9999
GAAAA	chr11:95550902-95551169(+)$1	267	102	107	14.9999

#otherMatches

#Struct PSSM
g::::	chr1:226564814-226565096(-)$1	282	204	209	14.9999
88888	chr7:158244370-158244646(-)$1	276	75	80	14.9999
cnnnn	chr2:71649852-71650094(+)$1	242	100	105	14.9999
dddqq	chr5:159463610-159463879(+)$1	269	1	6	14.9999
HHH:c	chr1:202742182-202742462(-)$1	280	89	94	14.9999
boooo	chr11:43413332-43413632(+)$1	300	246	251	14.9999
%%%%%	chr1:153791166-153791499(-)$1	333	272	277	14.9999
i!!cc	chr17:1265127-1265382(-)$1	255	207	212	14.9999
iiiii	chr3:179109693-179109969(+)$1	276	94	99	14.9999
:::::	chr12:123808156-123808413(-)$1	257	57	62	14.9999
nnnff	chr2:198352496-198352726(-)$1	230	51	56	14.9999
DDDQQ	chr8:12595405-12595650(-)$1	245	21	26	14.9999
c::::	chr2:54028463-54028752(+)$1	289	38	43	14.9999
:::::	chr6:82936807-82937075(-)$1	268	204	209	14.9999
hhh22	chr14:31856232-31856464(-)$1	232	72	77	14.9999
>>>>>	chr12:9809516-9809809(+)$1	293	77	82	14.9999
::GGG	chr2:71630951-71631221(+)$1	270	67	72	14.9999
f8888	chr15:49437061-49437315(-)$1	254	82	87	14.9999
:::::	chr11:129990563-129990813(+)$1	250	72	77	14.9999
]dddd	chr2:128528250-128528468(-)$1	218	46	51	14.9999
DDDLL	chr10:32317255-32317464(-)$1	209	24	29	14.9999
:::::	chr21:40574191-40574469(-)$1	278	178	183	14.9999
ddqqq	chr12:110566646-110566951(+)$1	305	37	42	14.9999
ddd::	chr5:36975889-36976138(+)$1	249	81	86	14.9999
bb:::	chr6:119332368-119332676(-)$1	308	152	157	14.9999
:::::	chr2:109086663-109086898(+)$1	235	19	24	14.9999
ccc::	chrX:54014108-54014439(-)$1	331	65	70	14.9999
:::::	chr2:162081082-162081330(+)$1	248	241	246	14.9999
annnn	chr21:38512760-38512981(+)$1	221	115	120	14.9999
c::::	chr7:5764860-5765093(-)$1	233	76	81	14.9999
oooee	chr16:27492299-27492534(-)$1	235	64	69	14.9999
ddd22	chr10:63850520-63850752(+)$1	232	115	120	14.9999
wwwww	chr2:96520994-96521261(-)$1	267	74	79	14.9999
DD:==	chr2:32865247-32865481(+)$1	234	6	11	14.9999
:::::	chr8:381240-381511(+)$1	271	40	45	14.9999
JJJJJ	chr1:174188164-174188534(+)$1	370	251	256	14.9999
ooooo	chr8:101299627-101299836(-)$1	209	28	33	14.9999
fffff	chr17:56083216-56083434(-)$1	218	77	82	14.9999
ooooo	chr9:107564237-107564466(-)$1	229	159	164	14.9999
YYJJJ	chr11:47767794-47768031(-)$1	237	206	211	14.9999
777ee	chr10:27371633-27371859(-)$1	226	173	178	14.9999
wwwww	chr3:37343695-37343912(+)$1	217	109	114	14.9999
cc:::	chr17:49365297-49365544(+)$1	247	240	245	14.9999
!!===	chr1:62455869-62456103(+)$1	234	26	31	14.9999
doooo	chr11:108173572-108173847(+)$1	275	34	39	14.9999
BBKKC	chr16:24990191-24990427(-)$1	236	107	112	14.9999
ooooo	chr9:6814556-6814786(+)$1	230	17	22	14.9999
{FFFF	chr2:63058135-63058360(+)$1	225	136	141	14.9999
DMMMM	chr6:7582926-7583136(+)$1	210	19	24	14.9999
=====	chr3:121416855-121417111(-)$1	256	186	191	14.9999
=====	chr3:73096359-73096607(+)$1	248	124	129	14.9999
f%%%%	chr3:105243186-105243455(+)$1	269	51	56	14.9999
:::::	chr18:13731601-13731868(+)$1	267	14	19	14.9999
:JJJJ	chr5:109155818-109156112(+)$1	294	282	287	14.9999
d::::	chr11:77387923-77388146(-)$1	223	114	119	14.9999
nnnnn	chr18:72345635-72345890(+)$1	255	77	82	14.9999
bb:::	chr9:131367475-131367718(+)$1	243	168	173	14.9999
dddd4	chr4:13578936-13579211(-)$1	275	112	117	14.9999
ggggg	chr11:72632773-72632989(-)$1	216	102	107	14.9999
sssss	chr10:114190523-114190766(-)$1	243	131	136	14.9999
4444e	chr6:56417385-56417629(-)$1	244	153	158	14.9999
:::::	chr12:75893580-75893832(-)$1	252	139	144	14.9999
7777c	chr12:459823-460046(-)$1	223	122	127	14.9999
FFMMM	chr15:59185377-59185662(-)$1	285	57	62	14.9999
mmmmb	chr11:95550902-95551169(+)$1	267	102	107	14.9999

#DB
)....	chr1:226564814-226565096(-)$1	1	204	209	14.9999
.....	chr7:158244370-158244646(-)$1	1	75	80	14.9999
(....	chr2:71649852-71650094(+)$1	1	100	105	14.9999
(((..	chr5:159463610-159463879(+)$1	1	1	6	14.9999
(((.(	chr1:202742182-202742462(-)$1	1	89	94	14.9999
(....	chr11:43413332-43413632(+)$1	1	246	251	14.9999
.....	chr1:153791166-153791499(-)$1	1	272	277	14.9999
(..((	chr17:1265127-1265382(-)$1	1	207	212	14.9999
(((((	chr3:179109693-179109969(+)$1	1	94	99	14.9999
.....	chr12:123808156-123808413(-)$1	1	57	62	14.9999
...))	chr2:198352496-198352726(-)$1	1	51	56	14.9999
(((..	chr8:12595405-12595650(-)$1	1	21	26	14.9999
)....	chr2:54028463-54028752(+)$1	1	38	43	14.9999
.....	chr6:82936807-82937075(-)$1	1	204	209	14.9999
)))..	chr14:31856232-31856464(-)$1	1	72	77	14.9999
.....	chr12:9809516-9809809(+)$1	1	77	82	14.9999
..(((	chr2:71630951-71631221(+)$1	1	67	72	14.9999
)....	chr15:49437061-49437315(-)$1	1	82	87	14.9999
.....	chr11:129990563-129990813(+)$1	1	72	77	14.9999
.))))	chr2:128528250-128528468(-)$1	1	46	51	14.9999
(((..	chr10:32317255-32317464(-)$1	1	24	29	14.9999
.....	chr21:40574191-40574469(-)$1	1	178	183	14.9999
((...	chr12:110566646-110566951(+)$1	1	37	42	14.9999
)))..	chr5:36975889-36976138(+)$1	1	81	86	14.9999
))...	chr6:119332368-119332676(-)$1	1	152	157	14.9999
.....	chr2:109086663-109086898(+)$1	1	19	24	14.9999
)))..	chrX:54014108-54014439(-)$1	1	65	70	14.9999
.....	chr2:162081082-162081330(+)$1	1	241	246	14.9999
(....	chr21:38512760-38512981(+)$1	1	115	120	14.9999
)....	chr7:5764860-5765093(-)$1	1	76	81	14.9999
...))	chr16:27492299-27492534(-)$1	1	64	69	14.9999
)))..	chr10:63850520-63850752(+)$1	1	115	120	14.9999
.....	chr2:96520994-96521261(-)$1	1	74	79	14.9999
((.((	chr2:32865247-32865481(+)$1	1	6	11	14.9999
.....	chr8:381240-381511(+)$1	1	40	45	14.9999
)))))	chr1:174188164-174188534(+)$1	1	251	256	14.9999
.....	chr8:101299627-101299836(-)$1	1	28	33	14.9999
(((((	chr17:56083216-56083434(-)$1	1	77	82	14.9999
.....	chr9:107564237-107564466(-)$1	1	159	164	14.9999
..)))	chr11:47767794-47768031(-)$1	1	206	211	14.9999
...))	chr10:27371633-27371859(-)$1	1	173	178	14.9999
.....	chr3:37343695-37343912(+)$1	1	109	114	14.9999
))...	chr17:49365297-49365544(+)$1	1	240	245	14.9999
..(((	chr1:62455869-62456103(+)$1	1	26	31	14.9999
(....	chr11:108173572-108173847(+)$1	1	34	39	14.9999
((..(	chr16:24990191-24990427(-)$1	1	107	112	14.9999
.....	chr9:6814556-6814786(+)$1	1	17	22	14.9999
.((((	chr2:63058135-63058360(+)$1	1	136	141	14.9999
(....	chr6:7582926-7583136(+)$1	1	19	24	14.9999
(((((	chr3:121416855-121417111(-)$1	1	186	191	14.9999
(((((	chr3:73096359-73096607(+)$1	1	124	129	14.9999
(....	chr3:105243186-105243455(+)$1	1	51	56	14.9999
.....	chr18:13731601-13731868(+)$1	1	14	19	14.9999
.))))	chr5:109155818-109156112(+)$1	1	282	287	14.9999
)....	chr11:77387923-77388146(-)$1	1	114	119	14.9999
.....	chr18:72345635-72345890(+)$1	1	77	82	14.9999
))...	chr9:131367475-131367718(+)$1	1	168	173	14.9999
)))).	chr4:13578936-13579211(-)$1	1	112	117	14.9999
)))))	chr11:72632773-72632989(-)$1	1	102	107	14.9999
.....	chr10:114190523-114190766(-)$1	1	131	136	14.9999
....)	chr6:56417385-56417629(-)$1	1	153	158	14.9999
.....	chr12:75893580-75893832(-)$1	1	139	144	14.9999
....)	chr12:459823-460046(-)$1	1	122	127	14.9999
((...	chr15:59185377-59185662(-)$1	1	57	62	14.9999
....)	chr11:95550902-95551169(+)$1	1	102	107	14.9999

#PSSM
G : 0.98	g : 0.01	
A : 0.98	a : 0.01	
A : 0.98	a : 0.01	
A : 0.98	a : 0.01	
A : 0.98	a : 0.01	

#score	974.9999999999995
#seq	65
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_transcript_m1_run2.nuc.txt

#NT
CAGCCCAGC	chr16:72822517-72822740(-)$1	223	209	218	11.4339
CUGCCAAGC	chr22:42301927-42302135(+)$1	208	11	20	10.9622
AGGCCAGGC	chr16:57417148-57417409(+)$1	261	173	182	9.8301
CAGCCUGAC	chr11:61551242-61551496(+)$1	254	134	143	12.5660
CAGCCUGGA	chr12:9229424-9229632(-)$1	208	137	146	12.2830
CAUCCAGGA	chr3:23959242-23959451(+)$1	209	125	134	11.5283
CCGCCCGGC	chr7:2701688-2701944(+)$1	256	14	23	11.3396
CAUCCAGGU	chr1:20977511-20977777(-)$1	266	209	218	11.1509
GAGCCAGAC	chr3:78666997-78667281(-)$1	284	59	68	10.9622
CACCCUGGC	chr14:94914720-94914973(-)$1	253	107	116	11.6226
CAGACUGGC	chr22:21304117-21304429(+)$1	312	134	143	12.0943
CAUCCAGUC	chr14:65406000-65406313(-)$1	313	141	150	11.9999
CUGCCAGUC	chr7:6063827-6064099(-)$1	272	180	189	11.9056
CUGCCAGCC	chr7:2701498-2701768(+)$1	270	96	105	11.4339
CAGACCGGC	chr13:96444174-96444420(+)$1	246	156	165	11.7169
UAGUCAGGC	chr22:41923804-41924125(+)$1	321	60	69	9.9245
CAGCCAGAG	chr6:38120733-38120965(+)$1	232	164	173	11.8113
CAGCCUGGC	chr2:241900498-241900764(-)$1	266	209	218	15.3962
GAGCCAGGC	chr16:23584623-23584896(+)$1	273	141	150	13.7924
CUCCCAGGC	chr19:944248-944550(+)$1	302	24	33	10.7735
CAGCAAAGC	chr12:111894917-111895262(-)$1	345	197	206	10.0188
CAGCCAGGC	chr16:58202441-58202695(-)$1	254	191	200	18.1320
CAGAGAGGC	chr13:28197126-28197405(+)$1	279	147	156	10.2075
CAGCCAGAC	chr20:35412201-35412468(-)$1	267	54	63	15.3018
CAACCAGUC	chr16:52484123-52484472(-)$1	349	136	145	11.9056
CAGCCAGCC	chr2:43450926-43451187(-)$1	261	235	244	15.0188
caaacaggc	chr19:41937218-41937586(-)$1	368	34	43	11.2452
CAGACAGGA	chrX:20174125-20174337(-)$1	212	83	92	11.7169
CAGCCAAGA	chr22:22116365-22116617(-)$1	252	84	93	11.4339
CAGCCAGUA	chr2:216274359-216274562(-)$1	203	172	181	12.3773
CAGGCAGCC	chr8:17427186-17427426(+)$1	240	205	214	11.2452
CAGGCGGGC	chr11:64894968-64895275(-)$1	307	19	28	10.8679
CUGCCUGGC	chr12:104743544-104743803(+)$1	259	89	98	11.8113
CCGCCAGUC	chr16:81744554-81744815(+)$1	261	43	52	11.8113
CAGCAAGGC	chr1:202910360-202910589(-)$1	229	117	126	13.6037
CCGCCAGGC	chr17:61669024-61669294(+)$1	270	184	193	14.4528
CAACCAGGA	chrX:118602412-118602662(+)$1	250	200	209	11.4339
CAACCAGUC	chr4:26432349-26432743(+)$1	394	34	43	11.9056
CAUCCAGGA	chr2:174819584-174819805(-)$1	221	174	183	11.5283
cagacaagc	chr1:55317636-55317861(-)$1	225	152	161	11.2452
CAGCCAGGC	chr20:46313088-46313422(-)$1	334	294	303	18.1320
CAGCCCCGC	chr1:109642831-109643038(+)$1	207	187	196	11.0566
CAGCCAGGU	chr1:169510582-169510884(-)$1	302	126	135	14.6415
CAUCCAGAC	chr19:6718159-6718370(-)$1	211	72	81	11.8113
CAGCCUGUC	chr19:975538-975813(+)$1	275	121	130	12.7547
CCGCCUGGC	chr13:26828253-26828524(+)$1	271	139	148	11.7169
CAGCCCGGG	chr16:68156885-68157125(+)$1	240	0	9	11.5283
CAGUCAAGC	chr17:48458578-48458833(-)$1	255	142	151	10.7735
CAGCCAGAG	chr16:4013980-4014261(-)$1	281	237	246	11.8113
AAGCCAUGC	chr4:187540994-187541258(-)$1	264	48	57	9.7358
CAGACAGUC	chr12:9254105-9254347(-)$1	242	230	239	12.1886
CAGCCUCGC	chr15:73585673-73585988(+)$1	315	118	127	11.4339

#otherMatches

#Struct PSSM
>>>ffffff	chr7:139259772-139259982(-)$1	210	102	111	14.6415
DDDDDDD::	chr16:72822517-72822740(-)$1	223	209	218	11.4339
FFFKKDDDD	chr22:42301927-42302135(+)$1	208	11	20	10.9622
fff[ddddw	chr16:57417148-57417409(+)$1	261	173	182	9.8301
dd[ccc[bb	chr11:61551242-61551496(+)$1	254	134	143	12.5660
ccc]cccdd	chr12:9229424-9229632(-)$1	208	137	146	12.2830
ffffff:::	chr3:23959242-23959451(+)$1	209	125	134	11.5283
eee!!ccc^	chr7:2701688-2701944(+)$1	256	14	23	11.3396
dddd]a]dd	chr1:20977511-20977777(-)$1	266	209	218	11.1509
bb55555ee	chr3:78666997-78667281(-)$1	284	59	68	10.9622
oooooccc3	chr14:94914720-94914973(-)$1	253	107	116	11.6226
b]ddddiii	chr22:21304117-21304429(+)$1	312	134	143	12.0943
D}CCC}DDD	chr14:65406000-65406313(-)$1	313	141	150	11.9999
gggg[cccz	chr7:6063827-6064099(-)$1	272	180	189	11.9056
mmmmddddB	chr7:2701498-2701768(+)$1	270	96	105	11.4339
hhhhh]bbc	chr13:96444174-96444420(+)$1	246	156	165	11.7169
%%%%%%ccc	chr22:41923804-41924125(+)$1	321	60	69	9.9245
dddffffff	chr6:38120733-38120965(+)$1	232	164	173	11.8113
ddllldddd	chr2:241900498-241900764(-)$1	266	209	218	15.3962
IIIIIFFFF	chr16:23584623-23584896(+)$1	273	141	150	13.7924
cchhhhhhh	chr19:944248-944550(+)$1	302	24	33	10.7735
+++++++++	chr12:111894917-111895262(-)$1	345	197	206	10.0188
rrccc:EEE	chr16:58202441-58202695(-)$1	254	191	200	18.1320
cccoooooo	chr13:28197126-28197405(+)$1	279	147	156	10.2075
biiiiiiii	chr20:35412201-35412468(-)$1	267	54	63	15.3018
:::dddd!!	chr16:52484123-52484472(-)$1	349	136	145	11.9056
:ccc[bbpp	chr2:43450926-43451187(-)$1	261	235	244	15.0188
eee[dddd[	chr19:41937218-41937586(-)$1	368	34	43	11.2452
((((((eee	chrX:20174125-20174337(-)$1	212	83	92	11.7169
EEEEE}CCC	chr22:22116365-22116617(-)$1	252	84	93	11.4339
fff]ccc]b	chr2:216274359-216274562(-)$1	203	172	181	12.3773
EEEEEEE::	chr8:17427186-17427426(+)$1	240	205	214	11.2452
!!ffffff"	chr11:64894968-64895275(-)$1	307	19	28	10.8679
:ffffffnn	chr12:104743544-104743803(+)$1	259	89	98	11.8113
nnnnnbb22	chr16:81744554-81744815(+)$1	261	43	52	11.8113
hhhh::ccc	chr1:202910360-202910589(-)$1	229	117	126	13.6037
[ffffff[c	chr17:61669024-61669294(+)$1	270	184	193	14.4528
:::IIIIII	chrX:118602412-118602662(+)$1	250	200	209	11.4339
c!!a!!ddd	chr4:26432349-26432743(+)$1	394	34	43	11.9056
444eeeee]	chr2:174819584-174819805(-)$1	221	174	183	11.5283
dddoooooo	chr1:55317636-55317861(-)$1	225	152	161	11.2452
E}HHHHHHH	chr20:46313088-46313422(-)$1	334	294	303	18.1320
EEE?????H	chr1:109642831-109643038(+)$1	207	187	196	11.0566
xxxxxgggg	chr1:169510582-169510884(-)$1	302	126	135	14.6415
bnnnnnbb]	chr19:6718159-6718370(-)$1	211	72	81	11.8113
ddccc]ddd	chr19:975538-975813(+)$1	275	121	130	12.7547
[a[eeeee[	chr13:26828253-26828524(+)$1	271	139	148	11.7169
::::eeeee	chr16:68156885-68157125(+)$1	240	0	9	11.5283
ooobb]eee	chr17:48458578-48458833(-)$1	255	142	151	10.7735
FFFF}EEEE	chr16:4013980-4014261(-)$1	281	237	246	11.8113
qqqqdddd]	chr4:187540994-187541258(-)$1	264	48	57	9.7358
ccc::::::	chr12:9254105-9254347(-)$1	242	230	239	12.1886
NNNNBB{DD	chr15:73585673-73585988(+)$1	315	118	127	11.4339

#DB
...))))))	chr7:139259772-139259982(-)$1	1	102	111	14.6415
)))))))..	chr16:72822517-72822740(-)$1	1	209	218	11.4339
(((..((((	chr22:42301927-42302135(+)$1	1	11	20	10.9622
(((.((((.	chr16:57417148-57417409(+)$1	1	173	182	9.8301
((.(((.((	chr11:61551242-61551496(+)$1	1	134	143	12.5660
))).)))))	chr12:9229424-9229632(-)$1	1	137	146	12.2830
))))))...	chr3:23959242-23959451(+)$1	1	125	134	11.5283
(((..(((.	chr7:2701688-2701944(+)$1	1	14	23	11.3396
)))).).))	chr1:20977511-20977777(-)$1	1	209	218	11.1509
)).....))	chr3:78666997-78667281(-)$1	1	59	68	10.9622
.....))).	chr14:94914720-94914973(-)$1	1	107	116	11.6226
).))))(((	chr22:21304117-21304429(+)$1	1	134	143	12.0943
).))).)))	chr14:65406000-65406313(-)$1	1	141	150	11.9999
((((.(((.	chr7:6063827-6064099(-)$1	1	180	189	11.9056
....)))))	chr7:2701498-2701768(+)$1	1	96	105	11.4339
))))).)))	chr13:96444174-96444420(+)$1	1	156	165	11.7169
......(((	chr22:41923804-41924125(+)$1	1	60	69	9.9245
(((((((((	chr6:38120733-38120965(+)$1	1	164	173	11.8113
((...))))	chr2:241900498-241900764(-)$1	1	209	218	15.3962
)))))((((	chr16:23584623-23584896(+)$1	1	141	150	13.7924
(((((((((	chr19:944248-944550(+)$1	1	24	33	10.7735
.........	chr12:111894917-111895262(-)$1	1	197	206	10.0188
..))).)))	chr16:58202441-58202695(-)$1	1	191	200	18.1320
(((......	chr13:28197126-28197405(+)$1	1	147	156	10.2075
(((((((((	chr20:35412201-35412468(-)$1	1	54	63	15.3018
...((((..	chr16:52484123-52484472(-)$1	1	136	145	11.9056
.(((.((..	chr2:43450926-43451187(-)$1	1	235	244	15.0188
(((.((((.	chr19:41937218-41937586(-)$1	1	34	43	11.2452
......(((	chrX:20174125-20174337(-)$1	1	83	92	11.7169
))))).)))	chr22:22116365-22116617(-)$1	1	84	93	11.4339
))).))).)	chr2:216274359-216274562(-)$1	1	172	181	12.3773
)))))))..	chr8:17427186-17427426(+)$1	1	205	214	11.2452
..((((((.	chr11:64894968-64895275(-)$1	1	19	28	10.8679
.((((((..	chr12:104743544-104743803(+)$1	1	89	98	11.8113
.....))..	chr16:81744554-81744815(+)$1	1	43	52	11.8113
))))..(((	chr1:202910360-202910589(-)$1	1	117	126	13.6037
.((((((.(	chr17:61669024-61669294(+)$1	1	184	193	14.4528
...))))))	chrX:118602412-118602662(+)$1	1	200	209	11.4339
(..(..(((	chr4:26432349-26432743(+)$1	1	34	43	11.9056
...))))).	chr2:174819584-174819805(-)$1	1	174	183	11.5283
(((......	chr1:55317636-55317861(-)$1	1	152	161	11.2452
).)))))))	chr20:46313088-46313422(-)$1	1	294	303	18.1320
))).....)	chr1:109642831-109643038(+)$1	1	187	196	11.0566
.....))))	chr1:169510582-169510884(-)$1	1	126	135	14.6415
(.....)).	chr19:6718159-6718370(-)$1	1	72	81	11.8113
))))).)))	chr19:975538-975813(+)$1	1	121	130	12.7547
.(.(((((.	chr13:26828253-26828524(+)$1	1	139	148	11.7169
....(((((	chr16:68156885-68157125(+)$1	1	0	9	11.5283
...)).)))	chr17:48458578-48458833(-)$1	1	142	151	10.7735
)))).))))	chr16:4013980-4014261(-)$1	1	237	246	11.8113
....)))).	chr4:187540994-187541258(-)$1	1	48	57	9.7358
)))......	chr12:9254105-9254347(-)$1	1	230	239	12.1886
....((.((	chr15:73585673-73585988(+)$1	1	118	127	11.4339

#PSSM
C : 0.86	A : 0.03	G : 0.03	c : 0.03	U : 0.01	
A : 0.77	U : 0.09	C : 0.07	a : 0.03	G : 0.01	
G : 0.77	U : 0.09	A : 0.05	C : 0.03	a : 0.01	g : 0.01	
C : 0.79	A : 0.09	U : 0.03	a : 0.03	G : 0.03	
C : 0.90	A : 0.03	c : 0.03	G : 0.01	
A : 0.67	U : 0.16	C : 0.09	a : 0.03	G : 0.01	
G : 0.81	A : 0.09	C : 0.03	g : 0.01	a : 0.01	U : 0.01	
G : 0.64	U : 0.15	A : 0.11	C : 0.05	g : 0.03	
C : 0.71	A : 0.13	U : 0.05	G : 0.05	c : 0.03	

#score	644.0188679245281
#seq	53
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_CDS_m3_run2.nuc.txt

#NT
GGAG	chr3:133475025-133475271(+)$1	246	49	53	11.9999
GGAG	chr20:61460184-61460424(+)$1	240	11	15	11.9999
GGAG	chr9:117027601-117027841(+)$1	240	2	6	11.9999
GGAG	chr19:45412200-45412458(+)$1	258	18	22	11.9999
GGAG	chr17:80195612-80195867(+)$1	255	119	123	11.9999
GGAG	chr21:46893716-46893959(+)$1	243	18	22	11.9999
GGAG	chr8:11706505-11706774(-)$1	269	166	170	11.9999
GGAG	chr6:31239335-31239639(-)$1	304	44	48	11.9999
GGAG	chr20:60890016-60890269(-)$1	253	100	104	11.9999
GGAG	chr16:2164068-2164313(-)$1	245	4	8	11.9999
GGAG	chr17:79914832-79915049(-)$1	217	45	49	11.9999
GGAG	chr6:160492916-160493144(+)$1	228	54	58	11.9999
GGAG	chr20:17602083-17602290(-)$1	207	118	122	11.9999
GGAG	chr3:58084339-58084607(+)$1	268	97	101	11.9999
GGAG	chr1:19446597-19446849(-)$1	252	26	30	11.9999
GGAG	chr8:11705103-11705347(-)$1	244	83	87	11.9999
GGAG	chr11:75279995-75280319(+)$1	324	34	38	11.9999
GGAG	chr6:132271532-132271758(-)$1	226	122	126	11.9999
GGAG	chr17:79918551-79918888(-)$1	337	249	253	11.9999
GGAG	chr20:61542223-61542477(-)$1	254	34	38	11.9999
GGAG	chr10:95353489-95353694(-)$1	205	68	72	11.9999
GGAG	chr7:45928138-45928456(+)$1	318	109	113	11.9999
GGAG	chr3:184103786-184104045(+)$1	259	70	74	11.9999
GGAG	chr8:27463815-27464078(-)$1	263	78	82	11.9999
GGAG	chr1:236228189-236228456(-)$1	267	172	176	11.9999
GGAg	chr20:307084-307325(-)$1	241	103	107	11.9999
GGAG	chr19:13049847-13050072(+)$1	225	188	192	11.9999
GGAG	chr10:73590803-73591034(-)$1	231	25	29	11.9999
GGAG	chr9:117002399-117002642(+)$1	243	109	113	11.9999
GGAG	chr9:116824911-116825127(-)$1	216	50	54	11.9999
GGAG	chr14:23770951-23771156(+)$1	205	135	139	11.9999
GGAG	chr1:43396752-43396971(-)$1	219	13	17	11.9999
GGAG	chr6:43100175-43100431(+)$1	256	35	39	11.9999
GGAG	chr21:46915235-46915447(+)$1	212	63	67	11.9999
GGAG	chr6:31962237-31962526(+)$1	289	60	64	11.9999
GGAG	chr1:35652707-35652953(-)$1	246	128	132	11.9999
GGAG	chr9:128003073-128003286(-)$1	213	127	131	11.9999
GGAG	chr1:980712-980969(+)$1	257	176	180	11.9999
GGAG	chr21:46907261-46907507(+)$1	246	39	43	11.9999
GGAG	chr17:79812989-79813207(-)$1	218	57	61	11.9999
GGAG	chr7:45928392-45928671(+)$1	279	5	9	11.9999
GGAG	chr20:61463405-61463629(+)$1	224	1	5	11.9999
GGAG	chr14:23770956-23771175(+)$1	219	130	134	11.9999
GGAG	chr2:97482331-97482584(+)$1	253	45	49	11.9999
GGAG	chr9:116997816-116998032(+)$1	216	3	7	11.9999
GGAG	chr9:128003183-128003426(-)$1	243	77	81	11.9999
GGAG	chr21:46897630-46897891(+)$1	261	56	60	11.9999
GGAG	chr17:76969118-76969330(-)$1	212	32	36	11.9999
GGAG	chr20:61458503-61458736(+)$1	233	14	18	11.9999
GGAG	chr1:43394505-43394746(-)$1	241	53	57	11.9999
GGAG	chr19:35758032-35758292(+)$1	260	64	68	11.9999
GGAG	chr19:6682124-6682340(-)$1	216	107	111	11.9999
GGAG	chr3:58135484-58135721(+)$1	237	52	56	11.9999
GGAG	chr21:46912509-46912727(+)$1	218	158	162	11.9999
GGAG	chr20:61461020-61461271(+)$1	251	97	101	11.9999
GGAG	chr9:116997779-116997987(+)$1	208	40	44	11.9999
GGAG	chr20:61449772-61450004(+)$1	232	10	14	11.9999
GGAG	chr6:24357741-24358074(-)$1	333	43	47	11.9999
GGAG	chr6:43109569-43109847(+)$1	278	14	18	11.9999
GGAG	chr14:101200761-101201013(+)$1	252	159	163	11.9999
GGAG	chr20:61460879-61461132(+)$1	253	0	4	11.9999
GGAG	chr8:27461704-27461930(-)$1	226	46	50	11.9999
GGAG	chr10:73588673-73588936(-)$1	263	63	67	11.9999
GGAG	chr6:31996928-31997183(+)$1	255	50	54	11.9999
GGAG	chr2:220404667-220404930(-)$1	263	75	79	11.9999
GGAG	chr19:6694523-6694745(-)$1	222	19	23	11.9999
GGAG	chr10:102112033-102112282(+)$1	249	130	134	11.9999
GGAG	chr20:61460730-61460951(+)$1	221	112	116	11.9999
GGAG	chr1:19468040-19468279(-)$1	239	7	11	11.9999
GGAG	chr9:117005724-117005941(+)$1	217	90	94	11.9999
GGAG	chr19:6707134-6707379(-)$1	245	111	115	11.9999
GGAG	chr9:117015063-117015311(+)$1	248	45	49	11.9999
GGAG	chr9:116999160-116999366(+)$1	206	27	31	11.9999
GGAG	chr19:45411737-45412018(+)$1	281	76	80	11.9999
GGAG	chr16:3767355-3767612(-)$1	257	93	97	11.9999
GGAG	chr16:89839650-89839893(-)$1	243	112	116	11.9999
GGAG	chr3:186338492-186338722(+)$1	230	113	117	11.9999
GGAG	chr8:57906013-57906363(-)$1	350	67	71	11.9999
GGAG	chr11:67810657-67810935(+)$1	278	35	39	11.9999
GGAG	chr1:19513007-19513253(-)$1	246	32	36	11.9999
GGAG	chr12:57556588-57556830(+)$1	242	115	119	11.9999
GGAG	chr20:61471852-61472059(+)$1	207	109	113	11.9999
GGAG	chr14:95058313-95058552(+)$1	239	100	104	11.9999
GGAG	chr2:220408156-220408422(-)$1	266	34	38	11.9999
GGAG	chr19:45411818-45412074(+)$1	256	22	26	11.9999
GGAG	chr9:116840348-116840591(-)$1	243	34	38	11.9999
GGAG	chr17:64224097-64224346(-)$1	249	97	101	11.9999
GGAG	chr8:144994933-144995169(-)$1	236	36	40	11.9999
GGAG	chr9:128003242-128003491(-)$1	249	142	146	11.9999
GGAG	chr8:27461730-27462003(-)$1	273	35	39	11.9999

#otherMatches

#Struct PSSM
BKKJ	chr1:230841798-230842043(-)$1	245	134	138	11.9999
====	chr3:133475025-133475271(+)$1	246	49	53	11.9999
HHHH	chr20:61460184-61460424(+)$1	240	11	15	11.9999
HHHH	chr9:117027601-117027841(+)$1	240	2	6	11.9999
nncc	chr19:45412200-45412458(+)$1	258	18	22	11.9999
BB:c	chr17:80195612-80195867(+)$1	255	119	123	11.9999
D:FF	chr21:46893716-46893959(+)$1	243	18	22	11.9999
gccc	chr8:11706505-11706774(-)$1	269	166	170	11.9999
ff""	chr6:31239335-31239639(-)$1	304	44	48	11.9999
e22b	chr20:60890016-60890269(-)$1	253	100	104	11.9999
DD{B	chr16:2164068-2164313(-)$1	245	4	8	11.9999
iiii	chr17:79914832-79915049(-)$1	217	45	49	11.9999
eeee	chr6:160492916-160493144(+)$1	228	54	58	11.9999
gggg	chr20:17602083-17602290(-)$1	207	118	122	11.9999
gggb	chr3:58084339-58084607(+)$1	268	97	101	11.9999
{EEE	chr1:19446597-19446849(-)$1	252	26	30	11.9999
cc[b	chr8:11705103-11705347(-)$1	244	83	87	11.9999
]abb	chr11:75279995-75280319(+)$1	324	34	38	11.9999
EEEE	chr6:132271532-132271758(-)$1	226	122	126	11.9999
ddqq	chr17:79918551-79918888(-)$1	337	249	253	11.9999
iiii	chr20:61542223-61542477(-)$1	254	34	38	11.9999
JJJJ	chr10:95353489-95353694(-)$1	205	68	72	11.9999
a]cc	chr7:45928138-45928456(+)$1	318	109	113	11.9999
bb[d	chr3:184103786-184104045(+)$1	259	70	74	11.9999
cc[b	chr8:27463815-27464078(-)$1	263	78	82	11.9999
E}A?	chr1:236228189-236228456(-)$1	267	172	176	11.9999
eeee	chr20:307084-307325(-)$1	241	103	107	11.9999
ccc:	chr19:13049847-13050072(+)$1	225	188	192	11.9999
BBEE	chr10:73590803-73591034(-)$1	231	25	29	11.9999
cccc	chr9:117002399-117002642(+)$1	243	109	113	11.9999
nnna	chr9:116824911-116825127(-)$1	216	50	54	11.9999
}DDD	chr14:23770951-23771156(+)$1	205	135	139	11.9999
gggg	chr1:43396752-43396971(-)$1	219	13	17	11.9999
CCCC	chr6:43100175-43100431(+)$1	256	35	39	11.9999
dddd	chr21:46915235-46915447(+)$1	212	63	67	11.9999
ma]e	chr6:31962237-31962526(+)$1	289	60	64	11.9999
bb##	chr1:35652707-35652953(-)$1	246	128	132	11.9999
cc:d	chr9:128003073-128003286(-)$1	213	127	131	11.9999
eeee	chr1:980712-980969(+)$1	257	176	180	11.9999
JJJJ	chr21:46907261-46907507(+)$1	246	39	43	11.9999
dddd	chr17:79812989-79813207(-)$1	218	57	61	11.9999
FFFF	chr7:45928392-45928671(+)$1	279	5	9	11.9999
:::J	chr20:61463405-61463629(+)$1	224	1	5	11.9999
}DDD	chr14:23770956-23771175(+)$1	219	130	134	11.9999
ffff	chr2:97482331-97482584(+)$1	253	45	49	11.9999
gggg	chr9:116997816-116998032(+)$1	216	3	7	11.9999
bb]d	chr9:128003183-128003426(-)$1	243	77	81	11.9999
eee[	chr21:46897630-46897891(+)$1	261	56	60	11.9999
cc]b	chr17:76969118-76969330(-)$1	212	32	36	11.9999
MMMM	chr20:61458503-61458736(+)$1	233	14	18	11.9999
oooh	chr1:43394505-43394746(-)$1	241	53	57	11.9999
ee]f	chr19:35758032-35758292(+)$1	260	64	68	11.9999
bmmm	chr19:6682124-6682340(-)$1	216	107	111	11.9999
ffff	chr3:58135484-58135721(+)$1	237	52	56	11.9999
fffm	chr21:46912509-46912727(+)$1	218	158	162	11.9999
ffff	chr20:61461020-61461271(+)$1	251	97	101	11.9999
cccm	chr9:116997779-116997987(+)$1	208	40	44	11.9999
JJJJ	chr20:61449772-61450004(+)$1	232	10	14	11.9999
dddd	chr6:24357741-24358074(-)$1	333	43	47	11.9999
CCKK	chr6:43109569-43109847(+)$1	278	14	18	11.9999
b22e	chr14:101200761-101201013(+)$1	252	159	163	11.9999
JJJJ	chr20:61460879-61461132(+)$1	253	0	4	11.9999
d:::	chr8:27461704-27461930(-)$1	226	46	50	11.9999
IIII	chr10:73588673-73588936(-)$1	263	63	67	11.9999
dddd	chr6:31996928-31997183(+)$1	255	50	54	11.9999
FFFF	chr2:220404667-220404930(-)$1	263	75	79	11.9999
ffff	chr19:6694523-6694745(-)$1	222	19	23	11.9999
!eee	chr10:102112033-102112282(+)$1	249	130	134	11.9999
ffff	chr20:61460730-61460951(+)$1	221	112	116	11.9999
:::c	chr1:19468040-19468279(-)$1	239	7	11	11.9999
gggg	chr9:117005724-117005941(+)$1	217	90	94	11.9999
EEEE	chr19:6707134-6707379(-)$1	245	111	115	11.9999
====	chr9:117015063-117015311(+)$1	248	45	49	11.9999
b[cc	chr9:116999160-116999366(+)$1	206	27	31	11.9999
dddd	chr19:45411737-45412018(+)$1	281	76	80	11.9999
[a[b	chr16:3767355-3767612(-)$1	257	93	97	11.9999
cc[b	chr16:89839650-89839893(-)$1	243	112	116	11.9999
fbbh	chr3:186338492-186338722(+)$1	230	113	117	11.9999
FFDD	chr8:57906013-57906363(-)$1	350	67	71	11.9999
gggg	chr11:67810657-67810935(+)$1	278	35	39	11.9999
EEEE	chr1:19513007-19513253(-)$1	246	32	36	11.9999
DDDC	chr12:57556588-57556830(+)$1	242	115	119	11.9999
ee""	chr20:61471852-61472059(+)$1	207	109	113	11.9999
4444	chr14:95058313-95058552(+)$1	239	100	104	11.9999
ffff	chr2:220408156-220408422(-)$1	266	34	38	11.9999
ee[b	chr19:45411818-45412074(+)$1	256	22	26	11.9999
ee:D	chr9:116840348-116840591(-)$1	243	34	38	11.9999
GGGG	chr17:64224097-64224346(-)$1	249	97	101	11.9999
dd[b	chr8:144994933-144995169(-)$1	236	36	40	11.9999
bb]d	chr9:128003242-128003491(-)$1	249	142	146	11.9999
Geee	chr8:27461730-27462003(-)$1	273	35	39	11.9999

#DB
(..(	chr1:230841798-230842043(-)$1	1	134	138	11.9999
((((	chr3:133475025-133475271(+)$1	1	49	53	11.9999
((((	chr20:61460184-61460424(+)$1	1	11	15	11.9999
((((	chr9:117027601-117027841(+)$1	1	2	6	11.9999
..))	chr19:45412200-45412458(+)$1	1	18	22	11.9999
((.(	chr17:80195612-80195867(+)$1	1	119	123	11.9999
(.((	chr21:46893716-46893959(+)$1	1	18	22	11.9999
((((	chr8:11706505-11706774(-)$1	1	166	170	11.9999
((..	chr6:31239335-31239639(-)$1	1	44	48	11.9999
)..)	chr20:60890016-60890269(-)$1	1	100	104	11.9999
((.(	chr16:2164068-2164313(-)$1	1	4	8	11.9999
((((	chr17:79914832-79915049(-)$1	1	45	49	11.9999
))))	chr6:160492916-160493144(+)$1	1	54	58	11.9999
))))	chr20:17602083-17602290(-)$1	1	118	122	11.9999
))))	chr3:58084339-58084607(+)$1	1	97	101	11.9999
.(((	chr1:19446597-19446849(-)$1	1	26	30	11.9999
((.(	chr8:11705103-11705347(-)$1	1	83	87	11.9999
.)))	chr11:75279995-75280319(+)$1	1	34	38	11.9999
))))	chr6:132271532-132271758(-)$1	1	122	126	11.9999
((..	chr17:79918551-79918888(-)$1	1	249	253	11.9999
((((	chr20:61542223-61542477(-)$1	1	34	38	11.9999
((((	chr10:95353489-95353694(-)$1	1	68	72	11.9999
).))	chr7:45928138-45928456(+)$1	1	109	113	11.9999
((.(	chr3:184103786-184104045(+)$1	1	70	74	11.9999
((.(	chr8:27463815-27464078(-)$1	1	78	82	11.9999
).).	chr1:236228189-236228456(-)$1	1	172	176	11.9999
))))	chr20:307084-307325(-)$1	1	103	107	11.9999
))).	chr19:13049847-13050072(+)$1	1	188	192	11.9999
((((	chr10:73590803-73591034(-)$1	1	25	29	11.9999
))))	chr9:117002399-117002642(+)$1	1	109	113	11.9999
...)	chr9:116824911-116825127(-)$1	1	50	54	11.9999
.)))	chr14:23770951-23771156(+)$1	1	135	139	11.9999
))))	chr1:43396752-43396971(-)$1	1	13	17	11.9999
((((	chr6:43100175-43100431(+)$1	1	35	39	11.9999
))))	chr21:46915235-46915447(+)$1	1	63	67	11.9999
.).)	chr6:31962237-31962526(+)$1	1	60	64	11.9999
((..	chr1:35652707-35652953(-)$1	1	128	132	11.9999
)).(	chr9:128003073-128003286(-)$1	1	127	131	11.9999
))))	chr1:980712-980969(+)$1	1	176	180	11.9999
((((	chr21:46907261-46907507(+)$1	1	39	43	11.9999
))))	chr17:79812989-79813207(-)$1	1	57	61	11.9999
((((	chr7:45928392-45928671(+)$1	1	5	9	11.9999
...(	chr20:61463405-61463629(+)$1	1	1	5	11.9999
.)))	chr14:23770956-23771175(+)$1	1	130	134	11.9999
((((	chr2:97482331-97482584(+)$1	1	45	49	11.9999
((((	chr9:116997816-116998032(+)$1	1	3	7	11.9999
)).)	chr9:128003183-128003426(-)$1	1	77	81	11.9999
(((.	chr21:46897630-46897891(+)$1	1	56	60	11.9999
)).)	chr17:76969118-76969330(-)$1	1	32	36	11.9999
....	chr20:61458503-61458736(+)$1	1	14	18	11.9999
...)	chr1:43394505-43394746(-)$1	1	53	57	11.9999
)).)	chr19:35758032-35758292(+)$1	1	64	68	11.9999
(...	chr19:6682124-6682340(-)$1	1	107	111	11.9999
))))	chr3:58135484-58135721(+)$1	1	52	56	11.9999
(((.	chr21:46912509-46912727(+)$1	1	158	162	11.9999
))))	chr20:61461020-61461271(+)$1	1	97	101	11.9999
(((.	chr9:116997779-116997987(+)$1	1	40	44	11.9999
((((	chr20:61449772-61450004(+)$1	1	10	14	11.9999
((((	chr6:24357741-24358074(-)$1	1	43	47	11.9999
((..	chr6:43109569-43109847(+)$1	1	14	18	11.9999
)..)	chr14:101200761-101201013(+)$1	1	159	163	11.9999
((((	chr20:61460879-61461132(+)$1	1	0	4	11.9999
)...	chr8:27461704-27461930(-)$1	1	46	50	11.9999
((((	chr10:73588673-73588936(-)$1	1	63	67	11.9999
))))	chr6:31996928-31997183(+)$1	1	50	54	11.9999
((((	chr2:220404667-220404930(-)$1	1	75	79	11.9999
((((	chr19:6694523-6694745(-)$1	1	19	23	11.9999
.(((	chr10:102112033-102112282(+)$1	1	130	134	11.9999
))))	chr20:61460730-61460951(+)$1	1	112	116	11.9999
...(	chr1:19468040-19468279(-)$1	1	7	11	11.9999
))))	chr9:117005724-117005941(+)$1	1	90	94	11.9999
))))	chr19:6707134-6707379(-)$1	1	111	115	11.9999
((((	chr9:117015063-117015311(+)$1	1	45	49	11.9999
(.((	chr9:116999160-116999366(+)$1	1	27	31	11.9999
))))	chr19:45411737-45412018(+)$1	1	76	80	11.9999
.(.(	chr16:3767355-3767612(-)$1	1	93	97	11.9999
((.(	chr16:89839650-89839893(-)$1	1	112	116	11.9999
)))(	chr3:186338492-186338722(+)$1	1	113	117	11.9999
((((	chr8:57906013-57906363(-)$1	1	67	71	11.9999
((((	chr11:67810657-67810935(+)$1	1	35	39	11.9999
((((	chr1:19513007-19513253(-)$1	1	32	36	11.9999
))))	chr12:57556588-57556830(+)$1	1	115	119	11.9999
((..	chr20:61471852-61472059(+)$1	1	109	113	11.9999
....	chr14:95058313-95058552(+)$1	1	100	104	11.9999
((((	chr2:220408156-220408422(-)$1	1	34	38	11.9999
((.(	chr19:45411818-45412074(+)$1	1	22	26	11.9999
)).(	chr9:116840348-116840591(-)$1	1	34	38	11.9999
((((	chr17:64224097-64224346(-)$1	1	97	101	11.9999
((.(	chr8:144994933-144995169(-)$1	1	36	40	11.9999
)).)	chr9:128003242-128003491(-)$1	1	142	146	11.9999
((((	chr8:27461730-27462003(-)$1	1	35	39	11.9999

#PSSM
G : 0.99	
G : 0.99	
A : 0.99	
G : 0.98	g : 0.01	

#score	1091.9999999999995
#seq	91
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_transcript_m3_run1.nuc.txt

#NT
GAAGGAGA	chr1:28564298-28564519(+)$1	221	115	123	19.1086
gaaggaga	chr12:56563458-56563677(-)$1	219	208	216	19.1086
GGAGGAGA	chr20:3175846-3176090(-)$1	244	96	104	15.1956
GAAGGAAA	chr20:33095399-33095711(+)$1	312	145	153	15.8478
CAAGGAGA	chr17:61907633-61907916(+)$1	283	149	157	14.9782
GAAGGAGA	chr1:182821270-182821499(+)$1	229	148	156	19.1086
GAAGGAGU	chr2:233697571-233697853(+)$1	282	141	149	16.0652
GAAGAAGA	chr1:184764489-184764805(-)$1	316	98	106	15.0869
aaaggaga	chr10:15183344-15183663(-)$1	319	161	169	14.8695
GACGGAGA	chr19:13051317-13051562(+)$1	245	106	114	14.5434
GAAGGAGG	chr4:1360005-1360234(+)$1	229	164	172	16.9347
GAAGGAGA	chr19:5594029-5594289(-)$1	260	151	159	19.1086
GAAGGAGA	chr1:24978823-24979128(+)$1	305	185	193	19.1086
CAAGGAGA	chr19:13065210-13065428(-)$1	218	184	192	14.9782
GAAUGAGA	chr6:31502095-31502320(-)$1	225	196	204	14.5434
GAAGGAUG	chr6:31508066-31508291(-)$1	225	77	85	13.0217
GAAGGAAA	chr18:21061083-21061356(+)$1	273	98	106	15.8478
gaaguaga	chr1:167973783-167974162(+)$1	379	67	75	14.8695
GAAGGAGG	chrX:53423053-53423292(-)$1	239	10	18	16.9347
GGAGGAGG	chr13:28195982-28196257(+)$1	275	175	183	13.0217
GAAGGAAG	chr7:16736438-16736698(+)$1	260	205	213	13.6739
GAAGAAGA	chr14:73563562-73563797(+)$1	235	218	226	15.0869
GAUGGAGA	chr4:1746581-1746846(+)$1	265	143	151	14.5434
GAAGGAGG	chr11:62484423-62484651(-)$1	228	51	59	16.9347
GAAGGACA	chr15:30065329-30065612(-)$1	283	163	171	15.1956
gaagaaga	chr14:102549290-102549506(-)$1	216	43	51	15.0869
GGAGGAGA	chr22:22024984-22025208(+)$1	224	148	156	15.1956
GGAGGAGA	chr11:77790679-77790992(-)$1	313	103	111	15.1956
gaaggaga	chr9:100777618-100777869(+)$1	251	77	85	19.1086
GAAUGAGA	chr5:176335429-176335712(-)$1	283	17	25	14.5434
AAAGGAGA	chr1:145456258-145456507(-)$1	249	111	119	14.8695
GGAGGAGA	chr6:44219843-44220048(+)$1	205	70	78	15.1956
GAAGGAGU	chr11:64536887-64537115(-)$1	228	58	66	16.0652
GAAGGAGU	chr16:89349996-89350283(-)$1	287	261	269	16.0652
GAAGGAGG	chr1:150192922-150193164(-)$1	242	103	111	16.9347
GAAGGAAA	chr7:158447715-158447971(-)$1	256	30	38	15.8478
GAAGGAGG	chr5:145523961-145524172(-)$1	211	158	166	16.9347
GAAGCAGA	chr3:197421142-197421417(-)$1	275	92	100	14.9782
CAAGGAGA	chr17:79637291-79637556(+)$1	265	156	164	14.9782
GAAGCAGG	chr12:76442111-76442315(-)$1	204	24	32	12.8043
GAAGGAAG	chr11:122928452-122928690(-)$1	238	71	79	13.6739
GAAGGAAA	chr9:123290050-123290268(-)$1	218	88	96	15.8478
GAGGGAGA	chr22:29692127-29692452(+)$1	325	283	291	14.5434
gaaggaaa	chr4:31999285-31999551(+)$1	266	18	26	15.8478
GAAGGAGC	chr10:71128210-71128468(+)$1	258	126	134	15.8478

#otherMatches

#Struct PSSM
DDBB}JJJ	chr1:156536188-156536439(-)$1	251	119	127	16.9347
##bb[a!!	chr1:28564298-28564519(+)$1	221	115	123	19.1086
???DDDD:	chr12:56563458-56563677(-)$1	219	208	216	19.1086
fffffddd	chr20:3175846-3176090(-)$1	244	96	104	15.1956
hhhhhhhh	chr20:33095399-33095711(+)$1	312	145	153	15.8478
b:DDDDee	chr17:61907633-61907916(+)$1	283	149	157	14.9782
d::FFFFF	chr1:182821270-182821499(+)$1	229	148	156	19.1086
tttttttt	chr2:233697571-233697853(+)$1	282	141	149	16.0652
::::::::	chr1:184764489-184764805(-)$1	316	98	106	15.0869
::::IIII	chr10:15183344-15183663(-)$1	319	161	169	14.8695
CC{FFFFF	chr19:13051317-13051562(+)$1	245	106	114	14.5434
mmccc:dd	chr4:1360005-1360234(+)$1	229	164	172	16.9347
2=======	chr19:5594029-5594289(-)$1	260	151	159	19.1086
hhhhh:::	chr1:24978823-24979128(+)$1	305	185	193	19.1086
bb[a!!a[	chr19:13065210-13065428(-)$1	218	184	192	14.9782
gg:DDDDY	chr6:31502095-31502320(-)$1	225	196	204	14.5434
nnnbbBB}	chr6:31508066-31508291(-)$1	225	77	85	13.0217
:::bb###	chr18:21061083-21061356(+)$1	273	98	106	15.8478
dddeeeee	chr1:167973783-167974162(+)$1	379	67	75	14.8695
:::BB{CC	chrX:53423053-53423292(-)$1	239	10	18	16.9347
}A}FFFFF	chr13:28195982-28196257(+)$1	275	175	183	13.0217
[cccoooo	chr7:16736438-16736698(+)$1	260	205	213	13.6739
DYYIIIII	chr14:73563562-73563797(+)$1	235	218	226	15.0869
llffffff	chr4:1746581-1746846(+)$1	265	143	151	14.5434
uuuuuuuu	chr11:62484423-62484651(-)$1	228	51	59	16.9347
b[gggggg	chr15:30065329-30065612(-)$1	283	163	171	15.1956
G:::::::	chr14:102549290-102549506(-)$1	216	43	51	15.0869
mmmmbb22	chr22:22024984-22025208(+)$1	224	148	156	15.1956
GGGGGGG:	chr11:77790679-77790992(-)$1	313	103	111	15.1956
dd[a[bb+	chr9:100777618-100777869(+)$1	251	77	85	19.1086
piiiiiii	chr5:176335429-176335712(-)$1	283	17	25	14.5434
dffffff$	chr1:145456258-145456507(-)$1	249	111	119	14.8695
^^^^^^^^	chr6:44219843-44220048(+)$1	205	70	78	15.1956
ff22dddd	chr11:64536887-64537115(-)$1	228	58	66	16.0652
~~~~ACCC	chr16:89349996-89350283(-)$1	287	261	269	16.0652
eeoooooo	chr1:150192922-150193164(-)$1	242	103	111	16.9347
gggg####	chr7:158447715-158447971(-)$1	256	30	38	15.8478
e:CCC}DD	chr5:145523961-145524172(-)$1	211	158	166	16.9347
gggga[bb	chr3:197421142-197421417(-)$1	275	92	100	14.9782
e'''''''	chr17:79637291-79637556(+)$1	265	156	164	14.9782
FFFFFFCC	chr12:76442111-76442315(-)$1	204	24	32	12.8043
333fffff	chr11:122928452-122928690(-)$1	238	71	79	13.6739
cc]iiiii	chr9:123290050-123290268(-)$1	218	88	96	15.8478
F}HHHHHH	chr22:29692127-29692452(+)$1	325	283	291	14.5434
DDEEEEE:	chr4:31999285-31999551(+)$1	266	18	26	15.8478
hh]bb]bb	chr10:71128210-71128468(+)$1	258	126	134	15.8478

#DB
)))).)))	chr1:156536188-156536439(-)$1	1	119	127	16.9347
..((.(..	chr1:28564298-28564519(+)$1	1	115	123	19.1086
...)))).	chr12:56563458-56563677(-)$1	1	208	216	19.1086
))))))))	chr20:3175846-3176090(-)$1	1	96	104	15.1956
))))))))	chr20:33095399-33095711(+)$1	1	145	153	15.8478
).((((((	chr17:61907633-61907916(+)$1	1	149	157	14.9782
)..)))))	chr1:182821270-182821499(+)$1	1	148	156	19.1086
........	chr2:233697571-233697853(+)$1	1	141	149	16.0652
........	chr1:184764489-184764805(-)$1	1	98	106	15.0869
....((((	chr10:15183344-15183663(-)$1	1	161	169	14.8695
((.(((((	chr19:13051317-13051562(+)$1	1	106	114	14.5434
..))).((	chr4:1360005-1360234(+)$1	1	164	172	16.9347
.)))))))	chr19:5594029-5594289(-)$1	1	151	159	19.1086
)))))...	chr1:24978823-24979128(+)$1	1	185	193	19.1086
((.(..(.	chr19:13065210-13065428(-)$1	1	184	192	14.9782
)).)))).	chr6:31502095-31502320(-)$1	1	196	204	14.5434
...)))).	chr6:31508066-31508291(-)$1	1	77	85	13.0217
...((...	chr18:21061083-21061356(+)$1	1	98	106	15.8478
)))(((((	chr1:167973783-167974162(+)$1	1	67	75	14.8695
...((.((	chrX:53423053-53423292(-)$1	1	10	18	16.9347
.).)))))	chr13:28195982-28196257(+)$1	1	175	183	13.0217
.(((....	chr7:16736438-16736698(+)$1	1	205	213	13.6739
)..)))))	chr14:73563562-73563797(+)$1	1	218	226	15.0869
..))))))	chr4:1746581-1746846(+)$1	1	143	151	14.5434
........	chr11:62484423-62484651(-)$1	1	51	59	16.9347
(.((((((	chr15:30065329-30065612(-)$1	1	163	171	15.1956
(.......	chr14:102549290-102549506(-)$1	1	43	51	15.0869
....))..	chr22:22024984-22025208(+)$1	1	148	156	15.1956
(((((((.	chr11:77790679-77790992(-)$1	1	103	111	15.1956
((.(.((.	chr9:100777618-100777869(+)$1	1	77	85	19.1086
.)))))))	chr5:176335429-176335712(-)$1	1	17	25	14.5434
)((((((.	chr1:145456258-145456507(-)$1	1	111	119	14.8695
........	chr6:44219843-44220048(+)$1	1	70	78	15.1956
))..))))	chr11:64536887-64537115(-)$1	1	58	66	16.0652
....))))	chr16:89349996-89350283(-)$1	1	261	269	16.0652
((......	chr1:150192922-150193164(-)$1	1	103	111	16.9347
((((....	chr7:158447715-158447971(-)$1	1	30	38	15.8478
).))).))	chr5:145523961-145524172(-)$1	1	158	166	16.9347
(((((.((	chr3:197421142-197421417(-)$1	1	92	100	14.9782
(.......	chr17:79637291-79637556(+)$1	1	156	164	14.9782
((((((((	chr12:76442111-76442315(-)$1	1	24	32	12.8043
...)))))	chr11:122928452-122928690(-)$1	1	71	79	13.6739
)).)))))	chr9:123290050-123290268(-)$1	1	88	96	15.8478
).))))))	chr22:29692127-29692452(+)$1	1	283	291	14.5434
(((((((.	chr4:31999285-31999551(+)$1	1	18	26	15.8478
)).)).))	chr10:71128210-71128468(+)$1	1	126	134	15.8478

#PSSM
G : 0.78	g : 0.10	C : 0.06	a : 0.02	A : 0.02	
A : 0.76	a : 0.13	G : 0.10	
A : 0.80	a : 0.13	C : 0.02	U : 0.02	G : 0.02	
G : 0.82	g : 0.13	U : 0.04	
G : 0.78	g : 0.08	A : 0.04	C : 0.04	u : 0.02	a : 0.02	
A : 0.86	a : 0.13	
G : 0.69	A : 0.13	g : 0.10	U : 0.02	C : 0.02	a : 0.02	
A : 0.54	G : 0.23	a : 0.13	U : 0.06	C : 0.02	

#score	724.2173913043475
#seq	46
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_CDS_m2_run1.nuc.txt

#NT
UACACCCU	chrM:11046-11252(+)$1	206	167	175	17.5833
AACACCCU	chrM:3978-4185(+)$1	207	31	39	21.5833
AACACCCU	chrM:11957-12162(+)$1	205	102	110	21.5833
AACACCCU	chrM:3999-4204(+)$1	205	10	18	21.5833
GACACCCU	chr11:2156550-2156758(-)$1	208	119	127	17.5833
AACAUCCU	chrM:7158-7362(+)$1	204	96	104	17.8333
AACACCCU	chrM:11142-11347(+)$1	205	122	130	21.5833
AACACCCU	chrM:11928-12132(+)$1	204	131	139	21.5833
AACAUCCU	chrM:7151-7358(+)$1	207	103	111	17.8333
AACACCCU	chrM:11982-12189(+)$1	207	77	85	21.5833
AUCACCCU	chrM:5213-5426(+)$1	213	109	117	17.0833
AACACCCA	chrM:10564-10775(+)$1	211	53	61	17.8333
AACAUCCU	chrM:7179-7387(+)$1	208	75	83	17.8333
UACACCCU	chrM:7014-7229(+)$1	215	96	104	17.5833
AACACCCA	chrM:10550-10757(+)$1	207	67	75	17.8333
AACACCCU	chrM:3945-4161(+)$1	216	64	72	21.5833
AACACCCU	chrM:12000-12208(+)$1	208	59	67	21.5833
AUCACCCU	chrM:5272-5477(+)$1	205	50	58	17.0833
AACACCCU	chrM:11884-12097(+)$1	213	175	183	21.5833
AACACCCU	chrM:11115-11342(+)$1	227	149	157	21.5833
AACACCCA	chrM:10539-10745(+)$1	206	78	86	17.8333
AACAACCU	chrM:10744-10950(+)$1	206	154	162	17.8333
AACACCCU	chrM:11214-11424(+)$1	210	50	58	21.5833
AACACCCU	chrM:11897-12100(+)$1	203	162	170	21.5833
UACACCCU	chrM:7037-7242(+)$1	205	73	81	17.5833
AACACCCA	chrM:10493-10701(+)$1	208	124	132	17.8333
AACACCCU	chrM:11944-12146(+)$1	202	115	123	21.5833
AACACCCU	chrM:11932-12140(+)$1	208	127	135	21.5833
AACACCCA	chrM:10529-10735(+)$1	206	88	96	17.8333
AACACCCA	chrM:10545-10750(+)$1	205	72	80	17.8333
AACACCCU	chrM:11989-12196(+)$1	207	70	78	21.5833
AACAUCCU	chrM:7165-7371(+)$1	206	89	97	17.8333
AACACCCU	chrM:11199-11405(+)$1	206	65	73	21.5833
AACACCCU	chrM:11912-12116(+)$1	204	147	155	21.5833
AACACCCU	chrM:11868-12084(+)$1	216	191	199	21.5833
GACACCCU	chr11:2156558-2156769(-)$1	211	130	138	17.5833
AACACCCU	chrM:11952-12157(+)$1	205	107	115	21.5833
AACACCCU	chrM:11966-12168(+)$1	202	93	101	21.5833
AACACCCU	chrM:11147-11350(+)$1	203	117	125	21.5833
AUCACCCU	chrM:5277-5488(+)$1	211	45	53	17.0833
AACAACCU	chrM:10711-10917(+)$1	206	187	195	17.8333
GACACCCU	chr11:2156518-2156720(-)$1	202	81	89	17.5833
AACAACCU	chr3:124732108-124732392(-)$1	284	174	182	17.8333
AACACCCU	chrM:11946-12152(+)$1	206	113	121	21.5833
GACACCCU	chr11:2156546-2156750(-)$1	204	111	119	17.5833
AACACCCU	chrM:11977-12182(+)$1	205	82	90	21.5833
AACACCCU	chrM:5025-5264(+)$1	239	164	172	21.5833
UACACCCU	chrM:11042-11246(+)$1	204	171	179	17.5833
AACACCCU	chrM:11150-11367(+)$1	217	114	122	21.5833
AACACCCU	chrM:3906-4145(+)$1	239	103	111	21.5833
AACAUCCU	chrM:7137-7342(+)$1	205	117	125	17.8333
AACACCCU	chrM:11962-12166(+)$1	204	97	105	21.5833
AACACCCA	chrM:10509-10726(+)$1	217	108	116	17.8333
AACACCCC	chr4:186598363-186598698(-)$1	335	191	199	17.3333
AACACCCU	chrM:11940-12144(+)$1	204	119	127	21.5833
AACACCCU	chrM:11996-12200(+)$1	204	63	71	21.5833
AACACCCU	chrM:11195-11399(+)$1	204	69	77	21.5833
AACAACCU	chrM:10719-10922(+)$1	203	179	187	17.8333
AACAACCU	chrM:10725-10940(+)$1	215	173	181	17.8333

#otherMatches

#Struct PSSM
::::::::	chrM:11852-12068(+)$1	216	207	215	21.5833
::::::::	chrM:11046-11252(+)$1	206	167	175	17.5833
::::::::	chrM:3978-4185(+)$1	207	31	39	21.5833
qqqqqqcc	chrM:11957-12162(+)$1	205	102	110	21.5833
::::::::	chrM:3999-4204(+)$1	205	10	18	21.5833
c"""dddd	chr11:2156550-2156758(-)$1	208	119	127	17.5833
e####eee	chrM:7158-7362(+)$1	204	96	104	17.8333
::::::::	chrM:11142-11347(+)$1	205	122	130	21.5833
qqqqqqcc	chrM:11928-12132(+)$1	204	131	139	21.5833
e####eee	chrM:7151-7358(+)$1	207	103	111	17.8333
ddddoooo	chrM:11982-12189(+)$1	207	77	85	21.5833
\\\\\FFF	chrM:5213-5426(+)$1	213	109	117	17.0833
::::::::	chrM:10564-10775(+)$1	211	53	61	17.8333
e####eee	chrM:7179-7387(+)$1	208	75	83	17.8333
GGGG}A}C	chrM:7014-7229(+)$1	215	96	104	17.5833
::::::::	chrM:10550-10757(+)$1	207	67	75	17.8333
::::::::	chrM:3945-4161(+)$1	216	64	72	21.5833
ddddoooo	chrM:12000-12208(+)$1	208	59	67	21.5833
::::::::	chrM:5272-5477(+)$1	205	50	58	17.0833
ddddoooo	chrM:11884-12097(+)$1	213	175	183	21.5833
::::::::	chrM:11115-11342(+)$1	227	149	157	21.5833
::::::::	chrM:10539-10745(+)$1	206	78	86	17.8333
::::::::	chrM:10744-10950(+)$1	206	154	162	17.8333
::::::::	chrM:11214-11424(+)$1	210	50	58	21.5833
ddddoooo	chrM:11897-12100(+)$1	203	162	170	21.5833
ddddaddd	chrM:7037-7242(+)$1	205	73	81	17.5833
::::::::	chrM:10493-10701(+)$1	208	124	132	17.8333
qqqqqqcc	chrM:11944-12146(+)$1	202	115	123	21.5833
qqqqqqcc	chrM:11932-12140(+)$1	208	127	135	21.5833
::::::::	chrM:10529-10735(+)$1	206	88	96	17.8333
::::::::	chrM:10545-10750(+)$1	205	72	80	17.8333
ddddoooo	chrM:11989-12196(+)$1	207	70	78	21.5833
e####eee	chrM:7165-7371(+)$1	206	89	97	17.8333
::::::::	chrM:11199-11405(+)$1	206	65	73	21.5833
qqqqqqcc	chrM:11912-12116(+)$1	204	147	155	21.5833
qqqqqqcc	chrM:11868-12084(+)$1	216	191	199	21.5833
bmmmmbb]	chr11:2156558-2156769(-)$1	211	130	138	17.5833
qqqqqqcc	chrM:11952-12157(+)$1	205	107	115	21.5833
qqqqqqcc	chrM:11966-12168(+)$1	202	93	101	21.5833
::::::::	chrM:11147-11350(+)$1	203	117	125	21.5833
::::::::	chrM:5277-5488(+)$1	211	45	53	17.0833
^^^^^^^^	chrM:10711-10917(+)$1	206	187	195	17.8333
bmmmmbb]	chr11:2156518-2156720(-)$1	202	81	89	17.5833
cooooooc	chr3:124732108-124732392(-)$1	284	174	182	17.8333
qqqqqqcc	chrM:11946-12152(+)$1	206	113	121	21.5833
c"""dddd	chr11:2156546-2156750(-)$1	204	111	119	17.5833
ddddoooo	chrM:11977-12182(+)$1	205	82	90	21.5833
::::::::	chrM:5025-5264(+)$1	239	164	172	21.5833
::::::::	chrM:11042-11246(+)$1	204	171	179	17.5833
::::::::	chrM:11150-11367(+)$1	217	114	122	21.5833
::::::::	chrM:3906-4145(+)$1	239	103	111	21.5833
e####eee	chrM:7137-7342(+)$1	205	117	125	17.8333
qqqqqqcc	chrM:11962-12166(+)$1	204	97	105	21.5833
::::::::	chrM:10509-10726(+)$1	217	108	116	17.8333
::::::::	chr4:186598363-186598698(-)$1	335	191	199	17.3333
qqqqqqcc	chrM:11940-12144(+)$1	204	119	127	21.5833
ddddoooo	chrM:11996-12200(+)$1	204	63	71	21.5833
::::::::	chrM:11195-11399(+)$1	204	69	77	21.5833
^^^^^^^^	chrM:10719-10922(+)$1	203	179	187	17.8333
::::::::	chrM:10725-10940(+)$1	215	173	181	17.8333

#DB
........	chrM:11852-12068(+)$1	1	207	215	21.5833
........	chrM:11046-11252(+)$1	1	167	175	17.5833
........	chrM:3978-4185(+)$1	1	31	39	21.5833
......))	chrM:11957-12162(+)$1	1	102	110	21.5833
........	chrM:3999-4204(+)$1	1	10	18	21.5833
(...((((	chr11:2156550-2156758(-)$1	1	119	127	17.5833
(....(((	chrM:7158-7362(+)$1	1	96	104	17.8333
........	chrM:11142-11347(+)$1	1	122	130	21.5833
......))	chrM:11928-12132(+)$1	1	131	139	21.5833
(....(((	chrM:7151-7358(+)$1	1	103	111	17.8333
((((....	chrM:11982-12189(+)$1	1	77	85	21.5833
.....)))	chrM:5213-5426(+)$1	1	109	117	17.0833
........	chrM:10564-10775(+)$1	1	53	61	17.8333
(....(((	chrM:7179-7387(+)$1	1	75	83	17.8333
)))).).)	chrM:7014-7229(+)$1	1	96	104	17.5833
........	chrM:10550-10757(+)$1	1	67	75	17.8333
........	chrM:3945-4161(+)$1	1	64	72	21.5833
((((....	chrM:12000-12208(+)$1	1	59	67	21.5833
........	chrM:5272-5477(+)$1	1	50	58	17.0833
((((....	chrM:11884-12097(+)$1	1	175	183	21.5833
........	chrM:11115-11342(+)$1	1	149	157	21.5833
........	chrM:10539-10745(+)$1	1	78	86	17.8333
........	chrM:10744-10950(+)$1	1	154	162	17.8333
........	chrM:11214-11424(+)$1	1	50	58	21.5833
((((....	chrM:11897-12100(+)$1	1	162	170	21.5833
))))))))	chrM:7037-7242(+)$1	1	73	81	17.5833
........	chrM:10493-10701(+)$1	1	124	132	17.8333
......))	chrM:11944-12146(+)$1	1	115	123	21.5833
......))	chrM:11932-12140(+)$1	1	127	135	21.5833
........	chrM:10529-10735(+)$1	1	88	96	17.8333
........	chrM:10545-10750(+)$1	1	72	80	17.8333
((((....	chrM:11989-12196(+)$1	1	70	78	21.5833
(....(((	chrM:7165-7371(+)$1	1	89	97	17.8333
........	chrM:11199-11405(+)$1	1	65	73	21.5833
......))	chrM:11912-12116(+)$1	1	147	155	21.5833
......))	chrM:11868-12084(+)$1	1	191	199	21.5833
(....)).	chr11:2156558-2156769(-)$1	1	130	138	17.5833
......))	chrM:11952-12157(+)$1	1	107	115	21.5833
......))	chrM:11966-12168(+)$1	1	93	101	21.5833
........	chrM:11147-11350(+)$1	1	117	125	21.5833
........	chrM:5277-5488(+)$1	1	45	53	17.0833
........	chrM:10711-10917(+)$1	1	187	195	17.8333
(....)).	chr11:2156518-2156720(-)$1	1	81	89	17.5833
(......)	chr3:124732108-124732392(-)$1	1	174	182	17.8333
......))	chrM:11946-12152(+)$1	1	113	121	21.5833
(...((((	chr11:2156546-2156750(-)$1	1	111	119	17.5833
((((....	chrM:11977-12182(+)$1	1	82	90	21.5833
........	chrM:5025-5264(+)$1	1	164	172	21.5833
........	chrM:11042-11246(+)$1	1	171	179	17.5833
........	chrM:11150-11367(+)$1	1	114	122	21.5833
........	chrM:3906-4145(+)$1	1	103	111	21.5833
(....(((	chrM:7137-7342(+)$1	1	117	125	17.8333
......))	chrM:11962-12166(+)$1	1	97	105	21.5833
........	chrM:10509-10726(+)$1	1	108	116	17.8333
........	chr4:186598363-186598698(-)$1	1	191	199	17.3333
......))	chrM:11940-12144(+)$1	1	119	127	21.5833
((((....	chrM:11996-12200(+)$1	1	63	71	21.5833
........	chrM:11195-11399(+)$1	1	69	77	21.5833
........	chrM:10719-10922(+)$1	1	179	187	17.8333
........	chrM:10725-10940(+)$1	1	173	181	17.8333

#PSSM
A : 0.86	U : 0.06	G : 0.06	
A : 0.95	U : 0.05	
C : 1.00	
A : 1.00	
C : 0.83	U : 0.08	A : 0.08	
C : 1.00	
C : 1.00	
U : 0.86	A : 0.11	C : 0.01	

#score	1181.5000000000011
#seq	60
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_transcript_m1_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
eeeeellleeeee::::::::ffffffeeeee[ccc"""dddd[eeeee[a[bb!!ffffff"""eeeee[ccc!!gggggggdddd[eeeee!!ccc!!eeeee!!dddd[bb####cccpppppppccc333bb]dddd]eeeeeccc22eeeeedddd4444ggggggg333ccc]eeeeeffffff22bb]a]eeeee]dddd4444ccc]eeeee]ffffff:::EEEEEKKCCC:eeeeennnnneeeee::::::ddddqqqqqqqqdddd:CCCYYEEEE	chr2:11722062-11722355(+)$1	293	4	292	864.0000

#DB
(((((...)))))........(((((((((((.(((...((((.(((((.(.((..((((((...(((((.(((..(((((((((((.(((((..(((..(((((..((((.((....(((.......)))...)).)))).))))))))..)))))))))....)))))))...))).)))))))))))..)).).))))).))))....))).))))).))))))...(((((..(((.(((((.....)))))......((((........)))).)))..))))	chr2:11722062-11722355(+)$1	1	4	292	864.0000

#PSSM
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	

#score	864.0
#seq	1
#width	288
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_CDS_m1_run1.nuc.txt

#NT
ccgccggcgcccc	chr2:55277114-55277355(-)$1	241	177	190	28.1666
ccgccgccgcccc	chr19:1241671-1242017(+)$1	346	251	264	28.0000
CCCCCUGCCCCCC	chr7:75932086-75932314(+)$1	228	110	123	17.0000
CAGUCGGUGCCCC	chr7:75677322-75677621(+)$1	299	130	143	16.1666
CCGACGGCGCCUC	chr22:23523266-23523573(+)$1	307	131	144	20.8333
gcgccggcgcccc	chr16:29818267-29818520(+)$1	253	34	47	24.6666
CCGCCGCCUCCGC	chr1:35657975-35658214(-)$1	239	113	126	21.3333
CCGCCACCGCCUC	chr1:35658199-35658561(-)$1	362	91	104	21.8333
cagccgccgccac	chr1:35658087-35658361(-)$1	274	2	15	21.3333
CCGCUGCCGCGCC	chr6:26056513-26056763(-)$1	250	132	145	19.3333
CCGCCUGCUCCUC	chr6:34212609-34212864(+)$1	255	62	75	18.1666
gcgccgccgcccc	chr16:88870116-88870414(+)$1	298	155	168	24.5000
ccgccggcgcccc	chr2:55276993-55277273(-)$1	280	95	108	28.1666
CAGCCCGCGCGCC	chr15:75230176-75230486(-)$1	310	106	119	17.8333
CCGCCGUCGUCGC	chr19:3985275-3985512(-)$1	237	56	69	18.3333
cccgccgcgcccc	chr2:55276819-55277078(-)$1	259	137	150	17.1666
CCGCCGGUGCCAG	chr5:70883206-70883427(+)$1	221	201	214	16.1666
CAGCCGCCGCCCC	chr22:21272027-21272359(+)$1	332	153	166	24.5000
cggccggcgcccc	chr16:58231517-58231871(-)$1	354	35	48	24.1666
ccgccgccgcucc	chr11:61734777-61735183(-)$1	406	224	237	23.6666
gcgccgccgcccc	chr16:88870214-88870492(+)$1	278	57	70	24.5000
gcgcccgcgcccc	chr19:50354486-50354835(+)$1	349	16	29	22.0000
CCGCCACCGCCGC	chr1:156721115-156721397(-)$1	282	99	112	22.0000
ccgcccccacccc	chr6:34212678-34212944(+)$1	266	56	69	21.5000
CCGCCCCCGCCCC	chr16:204184-204454(+)$1	270	70	83	25.3333
CCUCCGGGACCCC	chr16:204265-204551(+)$1	286	140	153	16.0000
ccuccggcgcccc	chr16:29818320-29818640(+)$1	320	173	186	24.1666
ccgccggcgcccc	chr2:55276878-55277193(-)$1	315	15	28	28.1666
ccgccgccgccgc	chr7:6523601-6523898(-)$1	297	196	209	25.1666

#otherMatches

#Struct PSSM
DDDYYFFFFFFBB	chr17:80049218-80049476(-)$1	258	108	121	19.5000
BHHHHHHHHZZZE	chr2:55277114-55277355(-)$1	241	177	190	28.1666
e[bb[ddddllld	chr19:1241671-1242017(+)$1	346	251	264	28.0000
cc22dddd333ee	chr7:75932086-75932314(+)$1	228	110	123	17.0000
333bbbb]ccc:D	chr7:75677322-75677621(+)$1	299	130	143	16.1666
ccc[eeeee####	chr22:23523266-23523573(+)$1	307	131	144	20.8333
eeeeeddddmmmm	chr16:29818267-29818520(+)$1	253	34	47	24.6666
nnnnnggggggg]	chr1:35657975-35658214(-)$1	239	113	126	21.3333
::bbmmmmbb:::	chr1:35658199-35658561(-)$1	362	91	104	21.8333
FFFF:bb[bbmmm	chr1:35658087-35658361(-)$1	274	2	15	21.3333
%cccmmmmccc66	chr6:26056513-26056763(-)$1	250	132	145	19.3333
::::iiiiiiiii	chr6:34212609-34212864(+)$1	255	62	75	18.1666
ccc[ccc$$$$$d	chr16:88870116-88870414(+)$1	298	155	168	24.5000
ccca]eeeee:::	chr2:55276993-55277273(-)$1	280	95	108	28.1666
3ccc]cccCCCLL	chr15:75230176-75230486(-)$1	310	106	119	17.8333
qccc]a]eeeee]	chr19:3985275-3985512(-)$1	237	56	69	18.3333
:::ddddxxxxxx	chr2:55276819-55277078(-)$1	259	137	150	17.1666
YYCCC::::bboo	chr5:70883206-70883427(+)$1	221	201	214	16.1666
FFbb[bb[aoooo	chr22:21272027-21272359(+)$1	332	153	166	24.5000
[bb!!eeeeennn	chr16:58231517-58231871(-)$1	354	35	48	24.1666
BB}A}DDDD}A}I	chr11:61734777-61735183(-)$1	406	224	237	23.6666
FFFFF{ADDDD{A	chr16:88870214-88870492(+)$1	278	57	70	24.5000
ccc!!dddd!!bb	chr19:50354486-50354835(+)$1	349	16	29	22.0000
pppppppffffff	chr1:156721115-156721397(-)$1	282	99	112	22.0000
:::::::::::DD	chr6:34212678-34212944(+)$1	266	56	69	21.5000
b]hhhhhhhh22b	chr16:204184-204454(+)$1	270	70	83	25.3333
==========$$$	chr16:204265-204551(+)$1	286	140	153	16.0000
gg22eeeee4444	chr16:29818320-29818640(+)$1	320	173	186	24.1666
bbCCC{BBKKHHH	chr2:55276878-55277193(-)$1	315	15	28	28.1666
::FFFFFFdddd#	chr7:6523601-6523898(-)$1	297	196	209	25.1666

#DB
)))..))))))))	chr17:80049218-80049476(-)$1	1	108	121	19.5000
)))))))))...)	chr2:55277114-55277355(-)$1	1	177	190	28.1666
(.((.((((...)	chr19:1241671-1242017(+)$1	1	251	264	28.0000
))..))))...))	chr7:75932086-75932314(+)$1	1	110	123	17.0000
...)))).))).)	chr7:75677322-75677621(+)$1	1	130	143	16.1666
(((.(((((....	chr22:23523266-23523573(+)$1	1	131	144	20.8333
)))))((((....	chr16:29818267-29818520(+)$1	1	34	47	24.6666
.....))))))).	chr1:35657975-35658214(-)$1	1	113	126	21.3333
..((....))...	chr1:35658199-35658561(-)$1	1	91	104	21.8333
((((.((.((...	chr1:35658087-35658361(-)$1	1	2	15	21.3333
.(((....)))..	chr6:26056513-26056763(-)$1	1	132	145	19.3333
....(((((((((	chr6:34212609-34212864(+)$1	1	62	75	18.1666
(((.(((.....(	chr16:88870116-88870414(+)$1	1	155	168	24.5000
)))).)))))...	chr2:55276993-55277273(-)$1	1	95	108	28.1666
.))).)))(((..	chr15:75230176-75230486(-)$1	1	106	119	17.8333
.))).).))))).	chr19:3985275-3985512(-)$1	1	56	69	18.3333
...((((......	chr2:55276819-55277078(-)$1	1	137	150	17.1666
..)))....((..	chr5:70883206-70883427(+)$1	1	201	214	16.1666
((((.((.(....	chr22:21272027-21272359(+)$1	1	153	166	24.5000
.((..(((((...	chr16:58231517-58231871(-)$1	1	35	48	24.1666
)).).)))).).)	chr11:61734777-61735183(-)$1	1	224	237	23.6666
(((((.(((((.(	chr16:88870214-88870492(+)$1	1	57	70	24.5000
(((..((((..((	chr19:50354486-50354835(+)$1	1	16	29	22.0000
.......))))))	chr1:156721115-156721397(-)$1	1	99	112	22.0000
...........((	chr6:34212678-34212944(+)$1	1	56	69	21.5000
).))))))))..)	chr16:204184-204454(+)$1	1	70	83	25.3333
((((((((((...	chr16:204265-204551(+)$1	1	140	153	16.0000
))..)))))....	chr16:29818320-29818640(+)$1	1	173	186	24.1666
))(((.((..(((	chr2:55276878-55277193(-)$1	1	15	28	28.1666
..((((((((((.	chr7:6523601-6523898(-)$1	1	196	209	25.1666

#PSSM
C : 0.46	c : 0.36	g : 0.13	A : 0.03	
c : 0.43	C : 0.39	A : 0.10	a : 0.03	g : 0.03	
G : 0.43	g : 0.43	C : 0.03	c : 0.03	U : 0.03	u : 0.03	
c : 0.46	C : 0.43	U : 0.03	A : 0.03	g : 0.03	
c : 0.49	C : 0.43	A : 0.03	U : 0.03	
g : 0.39	G : 0.30	c : 0.10	U : 0.06	A : 0.06	C : 0.06	
g : 0.26	C : 0.23	c : 0.23	G : 0.23	U : 0.03	
c : 0.49	C : 0.39	U : 0.06	G : 0.03	
g : 0.46	G : 0.36	U : 0.06	C : 0.03	a : 0.03	A : 0.03	
c : 0.49	C : 0.46	U : 0.03	
c : 0.46	C : 0.43	G : 0.06	u : 0.03	
c : 0.43	C : 0.26	U : 0.10	G : 0.10	a : 0.03	A : 0.03	g : 0.03	
c : 0.49	C : 0.46	G : 0.03	

#score	659.6666666666667
#seq	30
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_UTR_m3_run2.nuc.txt

#NT
CUGAAGG	chr17:79917335-79917588(-)$1	253	27	34	12.7567
CUGCAGG	chr14:24779667-24779926(+)$1	259	87	94	16.9459
CUGCAGC	chr3:48466628-48466850(-)$1	222	62	69	13.0270
CUGGAGG	chr3:42642255-42642502(+)$1	247	0	7	12.9594
CUGCUGG	chr2:241569210-241569469(+)$1	259	246	253	13.5675
CCGCAGG	chr1:1247641-1247912(-)$1	271	25	32	12.3513
CUUCAGG	chr12:54106545-54106779(-)$1	234	73	80	12.6891
CUGCAGG	chr20:43560829-43561071(+)$1	242	48	55	16.9459
CUGCAGG	chr19:45572302-45572565(+)$1	263	151	158	16.9459
CCGCAGG	chr11:72534484-72534740(+)$1	256	15	22	12.3513
CUGCACG	chr1:44436119-44436368(+)$1	249	197	204	12.4864
CUUCAGG	chr17:79683681-79683926(+)$1	245	37	44	12.6891
CUGCUGG	chr17:37881814-37882086(+)$1	272	219	226	13.5675
CUGCAGG	chr17:3489114-3489395(-)$1	281	137	144	16.9459
GUGCAGG	chr12:6442200-6442506(-)$1	306	149	156	13.3648
CUGCACG	chr3:47456566-47456837(-)$1	271	175	182	12.4864
CUGCUGG	chr9:140346976-140347219(-)$1	243	127	134	13.5675
CUGCUGG	chr17:78195158-78195392(+)$1	234	158	165	13.5675
CUGCAAG	chr1:19431017-19431252(-)$1	235	9	16	12.3513
CUGCUGG	chr16:29819333-29819586(+)$1	253	59	66	13.5675
CUGCAGC	chr16:89337215-89337492(-)$1	277	93	100	13.0270
CUGCGGG	chr5:850625-850885(-)$1	260	13	20	12.9594
CUGCAGG	chr17:73897251-73897514(-)$1	263	3	10	16.9459
CUGGAGG	chr17:73236401-73236673(-)$1	272	38	45	12.9594
CUGCAGG	chr3:49051473-49051766(+)$1	293	163	170	16.9459
GUGCAGG	chr22:19341527-19341834(-)$1	307	47	54	13.3648
CUGCUGG	chr14:105342440-105342698(+)$1	258	47	54	13.5675
GUGCAGG	chr3:9862052-9862352(+)$1	300	171	178	13.3648
CUGCAGG	chr11:68180957-68181279(+)$1	322	103	110	16.9459
CUGCGGG	chr5:177631650-177631914(+)$1	264	46	53	12.9594
CUGCAGG	chr8:145139042-145139283(+)$1	241	11	18	16.9459
AUGCAGG	chr20:42194887-42195214(+)$1	327	68	75	12.8918
CUGAAGG	chr16:57806096-57806361(-)$1	265	170	177	12.7567
CUGCAGA	chr12:57624409-57624660(+)$1	251	179	186	12.9594
CUGGAGG	chr16:3727593-3727834(-)$1	241	133	140	12.9594
CUGCAUG	chr6:31498103-31498373(-)$1	270	68	75	12.3513
CUGCAGU	chr16:2258295-2258575(+)$1	280	11	18	12.8243
cagcagg	chr7:47317711-47317964(-)$1	253	5	12	12.3513
cugcugg	chr14:24624189-24624463(+)$1	274	37	44	13.5675
CUGCAGG	chr19:56614531-56614775(-)$1	244	96	103	16.9459
CUGCAGC	chr11:63766028-63766331(-)$1	303	218	225	13.0270
CUGGAGG	chr12:58143024-58143289(-)$1	265	148	155	12.9594
CUCCAGG	chr10:99517250-99517505(+)$1	255	96	103	12.4189
CUGCAGG	chr5:65454899-65455152(+)$1	253	141	148	16.9459
UUGCAGG	chr5:170833244-170833516(+)$1	272	150	157	12.8243
CUGCACG	chr11:118962961-118963213(+)$1	252	212	219	12.4864
CUGCAGA	chr17:41006220-41006550(+)$1	330	318	325	12.9594
CUGCAGC	chr7:99707592-99707866(-)$1	274	197	204	13.0270
CAGCAGG	chr7:2402554-2402810(+)$1	256	67	74	12.3513
CUUCAGG	chr17:79683635-79683881(+)$1	246	83	90	12.6891
CUGCAGA	chr1:1256371-1256632(-)$1	261	88	95	12.9594
CUGCUGG	chr17:77081850-77082139(+)$1	289	182	189	13.5675
GUGCAGG	chr9:134356959-134357236(+)$1	277	30	37	13.3648
CUUCAGG	chr19:18548467-18548752(-)$1	285	176	183	12.6891
CUGCAGG	chr22:22048698-22048983(+)$1	285	177	184	16.9459
GUGCAGG	chr17:79639386-79639650(+)$1	264	252	259	13.3648
CUGCUGG	chr5:179264512-179264799(+)$1	287	247	254	13.5675
GUGCAGG	chr17:78180763-78181063(-)$1	300	244	251	13.3648
GUGCAGG	chr9:34647889-34648189(+)$1	300	63	70	13.3648
CUGCAGC	chr17:4793644-4793950(+)$1	306	224	231	13.0270
CUGGAGG	chr16:89627168-89627408(+)$1	240	99	106	12.9594
CUGGAGG	chr17:79866806-79867050(-)$1	244	83	90	12.9594
CUGCUGG	chr9:128099148-128099397(+)$1	249	189	196	13.5675
CUUCAGG	chr20:60773540-60773831(+)$1	291	75	82	12.6891
gugcagg	chr19:5927985-5928266(-)$1	281	47	54	13.3648
CUGCAGA	chr2:242611431-242611708(+)$1	277	70	77	12.9594
CUGCUGG	chr16:30106678-30106937(-)$1	259	60	67	13.5675
CUGCAGU	chr10:106014758-106015052(+)$1	294	79	86	12.8243
AUGCAGG	chr1:1326143-1326415(-)$1	272	106	113	12.8918
CUGAAGG	chr19:45452262-45452521(+)$1	259	226	233	12.7567
CUGCAGG	chr1:32680256-32680538(-)$1	282	231	238	16.9459
GUGCAGG	chr17:26966559-26966804(-)$1	245	206	213	13.3648
CUGCAGG	chr8:19675604-19675881(+)$1	277	94	101	16.9459

#otherMatches

#Struct PSSM
cccdddd	chr11:118514571-118514892(+)$1	321	275	282	16.9459
ee!!ddd	chr17:79917335-79917588(-)$1	253	27	34	12.7567
HHHHHHH	chr14:24779667-24779926(+)$1	259	87	94	16.9459
obb]eee	chr3:48466628-48466850(-)$1	222	62	69	13.0270
:CCC{CC	chr3:42642255-42642502(+)$1	247	0	7	12.9594
::BB}EE	chr2:241569210-241569469(+)$1	259	246	253	13.5675
sseeeee	chr1:1247641-1247912(-)$1	271	25	32	12.3513
$$$$ccc	chr12:54106545-54106779(-)$1	234	73	80	12.6891
hhhhhhh	chr20:43560829-43561071(+)$1	242	48	55	16.9459
nneeeee	chr19:45572302-45572565(+)$1	263	151	158	16.9459
JJJJJJJ	chr11:72534484-72534740(+)$1	256	15	22	12.3513
cbb]bb]	chr1:44436119-44436368(+)$1	249	197	204	12.4864
cchhhhh	chr17:79683681-79683926(+)$1	245	37	44	12.6891
bmmmmbb	chr17:37881814-37882086(+)$1	272	219	226	13.5675
F::::hh	chr17:3489114-3489395(-)$1	281	137	144	16.9459
hhhh[ee	chr12:6442200-6442506(-)$1	306	149	156	13.3648
ffff]cc	chr3:47456566-47456837(-)$1	271	175	182	12.4864
ggg::dd	chr9:140346976-140347219(-)$1	243	127	134	13.5675
ppbbfff	chr17:78195158-78195392(+)$1	234	158	165	13.5675
cclllcc	chr1:19431017-19431252(-)$1	235	9	16	12.3513
gggggg2	chr16:29819333-29819586(+)$1	253	59	66	13.5675
LLBB{DD	chr16:89337215-89337492(-)$1	277	93	100	13.0270
EEE{Aee	chr5:850625-850885(-)$1	260	13	20	12.9594
:GGGGGG	chr17:73897251-73897514(-)$1	263	3	10	16.9459
:gggggg	chr17:73236401-73236673(-)$1	272	38	45	12.9594
DDDD~~~	chr3:49051473-49051766(+)$1	293	163	170	16.9459
mdddd]g	chr22:19341527-19341834(-)$1	307	47	54	13.3648
"eeeee[	chr14:105342440-105342698(+)$1	258	47	54	13.5675
a]eeeee	chr3:9862052-9862352(+)$1	300	171	178	13.3648
gggggdd	chr11:68180957-68181279(+)$1	322	103	110	16.9459
mmmmccc	chr5:177631650-177631914(+)$1	264	46	53	12.9594
KKEEEEE	chr8:145139042-145139283(+)$1	241	11	18	16.9459
:::::ff	chr20:42194887-42195214(+)$1	327	68	75	12.8918
GGGYYCC	chr16:57806096-57806361(-)$1	265	170	177	12.7567
cmmmmcc	chr12:57624409-57624660(+)$1	251	179	186	12.9594
mmmccc]	chr16:3727593-3727834(-)$1	241	133	140	12.9594
ccc22dd	chr6:31498103-31498373(-)$1	270	68	75	12.3513
qqbb]cc	chr16:2258295-2258575(+)$1	280	11	18	12.8243
fffffll	chr7:47317711-47317964(-)$1	253	5	12	12.3513
:GGGGGG	chr14:24624189-24624463(+)$1	274	37	44	13.5675
effffff	chr19:56614531-56614775(-)$1	244	96	103	16.9459
ddbbooo	chr11:63766028-63766331(-)$1	303	218	225	13.0270
ddddddd	chr12:58143024-58143289(-)$1	265	148	155	12.9594
mma22gg	chr10:99517250-99517505(+)$1	255	96	103	12.4189
fff!!bb	chr5:65454899-65455152(+)$1	253	141	148	16.9459
g[bbmmm	chr5:170833244-170833516(+)$1	272	150	157	12.8243
lldddd:	chr11:118962961-118963213(+)$1	252	212	219	12.4864
cc]ccc]	chr17:41006220-41006550(+)$1	330	318	325	12.9594
GG}DDDD	chr7:99707592-99707866(-)$1	274	197	204	13.0270
44bb]ff	chr7:2402554-2402810(+)$1	256	67	74	12.3513
ddd22bb	chr17:79683635-79683881(+)$1	246	83	90	12.6891
qqqccc]	chr1:1256371-1256632(-)$1	261	88	95	12.9594
[bb[eee	chr17:77081850-77082139(+)$1	289	182	189	13.5675
{CCCHHH	chr9:134356959-134357236(+)$1	277	30	37	13.3648
eeee22a	chr19:18548467-18548752(-)$1	285	176	183	12.6891
bb[bb[i	chr22:22048698-22048983(+)$1	285	177	184	16.9459
nnnnnee	chr17:79639386-79639650(+)$1	264	252	259	13.3648
eeeeGGG	chr5:179264512-179264799(+)$1	287	247	254	13.5675
bb333gg	chr17:78180763-78181063(-)$1	300	244	251	13.3648
D{EEEEE	chr9:34647889-34648189(+)$1	300	63	70	13.3648
ddddEEE	chr17:4793644-4793950(+)$1	306	224	231	13.0270
eeeeeee	chr16:89627168-89627408(+)$1	240	99	106	12.9594
c]ccc]e	chr17:79866806-79867050(-)$1	244	83	90	12.9594
b]eeeee	chr9:128099148-128099397(+)$1	249	189	196	13.5675
cc22eee	chr20:60773540-60773831(+)$1	291	75	82	12.6891
]ccc:::	chr19:5927985-5928266(-)$1	281	47	54	13.3648
a[bb[ff	chr2:242611431-242611708(+)$1	277	70	77	12.9594
!!bb[ee	chr16:30106678-30106937(-)$1	259	60	67	13.5675
dddd]ee	chr10:106014758-106015052(+)$1	294	79	86	12.8243
HHHHHHH	chr1:1326143-1326415(-)$1	272	106	113	12.8918
ddd:EEE	chr19:45452262-45452521(+)$1	259	226	233	12.7567
eeeDDDD	chr1:32680256-32680538(-)$1	282	231	238	16.9459
a]fffff	chr17:26966559-26966804(-)$1	245	206	213	13.3648
rrrrrhh	chr8:19675604-19675881(+)$1	277	94	101	16.9459

#DB
)))))))	chr11:118514571-118514892(+)$1	1	275	282	16.9459
((..(((	chr17:79917335-79917588(-)$1	1	27	34	12.7567
(((((((	chr14:24779667-24779926(+)$1	1	87	94	16.9459
.)).)))	chr3:48466628-48466850(-)$1	1	62	69	13.0270
.(((.((	chr3:42642255-42642502(+)$1	1	0	7	12.9594
..)).))	chr2:241569210-241569469(+)$1	1	246	253	13.5675
..)))))	chr1:1247641-1247912(-)$1	1	25	32	12.3513
....(((	chr12:54106545-54106779(-)$1	1	73	80	12.6891
)))))))	chr20:43560829-43561071(+)$1	1	48	55	16.9459
..)))))	chr19:45572302-45572565(+)$1	1	151	158	16.9459
(((((((	chr11:72534484-72534740(+)$1	1	15	22	12.3513
))).)).	chr1:44436119-44436368(+)$1	1	197	204	12.4864
(((((((	chr17:79683681-79683926(+)$1	1	37	44	12.6891
(....))	chr17:37881814-37882086(+)$1	1	219	226	13.5675
(....((	chr17:3489114-3489395(-)$1	1	137	144	16.9459
((((.((	chr12:6442200-6442506(-)$1	1	149	156	13.3648
)))).))	chr3:47456566-47456837(-)$1	1	175	182	12.4864
)))..((	chr9:140346976-140347219(-)$1	1	127	134	13.5675
..)))))	chr17:78195158-78195392(+)$1	1	158	165	13.5675
((...))	chr1:19431017-19431252(-)$1	1	9	16	12.3513
)))))).	chr16:29819333-29819586(+)$1	1	59	66	13.5675
..((.((	chr16:89337215-89337492(-)$1	1	93	100	13.0270
(((.(((	chr5:850625-850885(-)$1	1	13	20	12.9594
.((((((	chr17:73897251-73897514(-)$1	1	3	10	16.9459
.((((((	chr17:73236401-73236673(-)$1	1	38	45	12.9594
))))...	chr3:49051473-49051766(+)$1	1	163	170	16.9459
.)))).)	chr22:19341527-19341834(-)$1	1	47	54	13.3648
.(((((.	chr14:105342440-105342698(+)$1	1	47	54	13.5675
).)))))	chr3:9862052-9862352(+)$1	1	171	178	13.3648
)))))((	chr11:68180957-68181279(+)$1	1	103	110	16.9459
....)))	chr5:177631650-177631914(+)$1	1	46	53	12.9594
..(((((	chr8:145139042-145139283(+)$1	1	11	18	16.9459
.....((	chr20:42194887-42195214(+)$1	1	68	75	12.8918
)))..))	chr16:57806096-57806361(-)$1	1	170	177	12.7567
(....))	chr12:57624409-57624660(+)$1	1	179	186	12.9594
...))).	chr16:3727593-3727834(-)$1	1	133	140	12.9594
)))..))	chr6:31498103-31498373(-)$1	1	68	75	12.3513
..)).))	chr16:2258295-2258575(+)$1	1	11	18	12.8243
(((((..	chr7:47317711-47317964(-)$1	1	5	12	12.3513
.((((((	chr14:24624189-24624463(+)$1	1	37	44	13.5675
(((((((	chr19:56614531-56614775(-)$1	1	96	103	16.9459
((((...	chr11:63766028-63766331(-)$1	1	218	225	13.0270
(((((((	chr12:58143024-58143289(-)$1	1	148	155	12.9594
..)..))	chr10:99517250-99517505(+)$1	1	96	103	12.4189
(((..((	chr5:65454899-65455152(+)$1	1	141	148	16.9459
(.((...	chr5:170833244-170833516(+)$1	1	150	157	12.8243
..)))).	chr11:118962961-118963213(+)$1	1	212	219	12.4864
)).))).	chr17:41006220-41006550(+)$1	1	318	325	12.9594
)).))))	chr7:99707592-99707866(-)$1	1	197	204	13.0270
..)).))	chr7:2402554-2402810(+)$1	1	67	74	12.3513
)))..))	chr17:79683635-79683881(+)$1	1	83	90	12.6891
...))).	chr1:1256371-1256632(-)$1	1	88	95	12.9594
.((.(((	chr17:77081850-77082139(+)$1	1	182	189	13.5675
.((((((	chr9:134356959-134357236(+)$1	1	30	37	13.3648
))))..)	chr19:18548467-18548752(-)$1	1	176	183	12.6891
((.((.(	chr22:22048698-22048983(+)$1	1	177	184	16.9459
.....))	chr17:79639386-79639650(+)$1	1	252	259	13.3648
)))))))	chr5:179264512-179264799(+)$1	1	247	254	13.5675
))...))	chr17:78180763-78181063(-)$1	1	244	251	13.3648
(.(((((	chr9:34647889-34648189(+)$1	1	63	70	13.3648
)))))))	chr17:4793644-4793950(+)$1	1	224	231	13.0270
)))))))	chr16:89627168-89627408(+)$1	1	99	106	12.9594
).))).)	chr17:79866806-79867050(-)$1	1	83	90	12.9594
).)))))	chr9:128099148-128099397(+)$1	1	189	196	13.5675
))..)))	chr20:60773540-60773831(+)$1	1	75	82	12.6891
.)))...	chr19:5927985-5928266(-)$1	1	47	54	13.3648
(.((.((	chr2:242611431-242611708(+)$1	1	70	77	12.9594
..((.((	chr16:30106678-30106937(-)$1	1	60	67	13.5675
)))).))	chr10:106014758-106015052(+)$1	1	79	86	12.8243
(((((((	chr1:1326143-1326415(-)$1	1	106	113	12.8918
))).)))	chr19:45452262-45452521(+)$1	1	226	233	12.7567
)))))))	chr1:32680256-32680538(-)$1	1	231	238	16.9459
).)))))	chr17:26966559-26966804(-)$1	1	206	213	13.3648
.....))	chr8:19675604-19675881(+)$1	1	94	101	16.9459

#PSSM
C : 0.81	G : 0.10	A : 0.02	c : 0.02	U : 0.01	g : 0.01	
U : 0.91	C : 0.02	u : 0.02	a : 0.01	A : 0.01	
G : 0.87	U : 0.06	g : 0.04	C : 0.01	
C : 0.83	G : 0.08	A : 0.04	c : 0.04	
A : 0.79	U : 0.13	G : 0.02	a : 0.02	u : 0.01	
G : 0.89	C : 0.04	g : 0.04	A : 0.01	U : 0.01	
G : 0.81	C : 0.06	A : 0.05	g : 0.04	U : 0.02	

#score	1017.3783783783771
#seq	74
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_CDS_m2_run1.nuc.txt

#NT
CCAGG	chr3:31705364-31705652(-)$1	288	75	80	14.9999
CCAGG	chr20:34241189-34241487(-)$1	298	172	177	14.9999
CCAGG	chr20:48759844-48760142(-)$1	298	148	153	14.9999
CCAGG	chr19:1398695-1399006(-)$1	311	122	127	14.9999
CCAGG	chr19:40740778-40741039(-)$1	261	124	129	14.9999
CCAGG	chr9:135930356-135930614(+)$1	258	17	22	14.9999
CCAGG	chr7:99631050-99631365(+)$1	315	45	50	14.9999
CCAGg	chr20:43052819-43053100(+)$1	281	88	93	14.9999
CCAGG	chr14:24607715-24607942(+)$1	227	98	103	14.9999
CCAGG	chr5:140021294-140021545(+)$1	251	205	210	14.9999
CCAGG	chr15:41099389-41099642(-)$1	253	163	168	14.9999
CCAGG	chr3:9965632-9965874(+)$1	242	35	40	14.9999
CCAGG	chr5:73931516-73931771(-)$1	255	27	32	14.9999
CCAGG	chr9:140347013-140347254(-)$1	241	138	143	14.9999
CCAGG	chr14:104145831-104146092(+)$1	261	107	112	14.9999
CCAGG	chr16:66864539-66864852(-)$1	313	208	213	14.9999
CCAGG	chrX:70469651-70469986(-)$1	335	189	194	14.9999
CCAGG	chr21:45557104-45557358(+)$1	254	45	50	14.9999
CCAGG	chr1:1341005-1341257(-)$1	252	20	25	14.9999
CCAGG	chr14:78227256-78227525(-)$1	269	65	70	14.9999
CCAGG	chr3:50098913-50099155(+)$1	242	63	68	14.9999
CCAGG	chr17:72860095-72860339(-)$1	244	103	108	14.9999
CCAGG	chr16:3117344-3117583(+)$1	239	212	217	14.9999
CCAGG	chr17:79532338-79532603(-)$1	265	233	238	14.9999
CCAGG	chr16:87377026-87377317(-)$1	291	110	115	14.9999
CCAGG	chr1:22216305-22216552(-)$1	247	47	52	14.9999
CCAGG	chr7:142962140-142962388(+)$1	248	103	108	14.9999
CCAGG	chr2:182757286-182757556(+)$1	270	51	56	14.9999
CCAGG	chr16:70698650-70698890(-)$1	240	77	82	14.9999
CCAGG	chr1:43396149-43396368(-)$1	219	68	73	14.9999
CCAGG	chr20:3172239-3172488(-)$1	249	56	61	14.9999
CCAGG	chr21:37417701-37417951(-)$1	250	68	73	14.9999
CCAGG	chr22:31654325-31654604(+)$1	279	187	192	14.9999
CCAGG	chr7:5429915-5430156(-)$1	241	31	36	14.9999
CCAGG	chr7:73021517-73021726(-)$1	209	81	86	14.9999
CCAGG	chr16:279049-279353(-)$1	304	23	28	14.9999
CCAGG	chr3:38167813-38168084(-)$1	271	164	169	14.9999
CCAGG	chr9:74979409-74979681(-)$1	272	219	224	14.9999
CCAGG	chr9:139752458-139752721(+)$1	263	9	14	14.9999
CCAGG	chr4:1936883-1937184(+)$1	301	65	70	14.9999
CCAGG	chr1:162336931-162337186(+)$1	255	244	249	14.9999
CCAGG	chr2:96858796-96859058(-)$1	262	111	116	14.9999
CCAGG	chr16:28847368-28847611(+)$1	243	88	93	14.9999
CCAGG	chr8:6566346-6566593(+)$1	247	58	63	14.9999
CCAGG	chr1:36755036-36755288(+)$1	252	18	23	14.9999
CCAGG	chr1:43212733-43213023(-)$1	290	19	24	14.9999
CCAGG	chr19:50905310-50905631(+)$1	321	83	88	14.9999
CCAGG	chr20:61299181-61299434(+)$1	253	178	183	14.9999
CCAGG	chr6:35454069-35454358(-)$1	289	47	52	14.9999
CCAGG	chr1:11898639-11898887(+)$1	248	127	132	14.9999
CCAGG	chr1:1019547-1019802(-)$1	255	122	127	14.9999
CCAGG	chr1:43396083-43396310(-)$1	227	10	15	14.9999
CCAGG	chr19:1271398-1271635(+)$1	237	190	195	14.9999

#otherMatches

#Struct PSSM
mmmee	chr9:139723832-139724108(+)$1	276	8	13	14.9999
+dddd	chr3:31705364-31705652(-)$1	288	75	80	14.9999
hhhhh	chr20:34241189-34241487(-)$1	298	172	177	14.9999
eeee!	chr20:48759844-48760142(-)$1	298	148	153	14.9999
""fff	chr19:1398695-1399006(-)$1	311	122	127	14.9999
hhhhh	chr19:40740778-40741039(-)$1	261	124	129	14.9999
ffff[	chr9:135930356-135930614(+)$1	258	17	22	14.9999
adddd	chr7:99631050-99631365(+)$1	315	45	50	14.9999
ddnnn	chr20:43052819-43053100(+)$1	281	88	93	14.9999
ttttc	chr14:24607715-24607942(+)$1	227	98	103	14.9999
EEEEH	chr5:140021294-140021545(+)$1	251	205	210	14.9999
fffff	chr15:41099389-41099642(-)$1	253	163	168	14.9999
3dddd	chr3:9965632-9965874(+)$1	242	35	40	14.9999
MDDDD	chr5:73931516-73931771(-)$1	255	27	32	14.9999
g!!bb	chr9:140347013-140347254(-)$1	241	138	143	14.9999
bb]cc	chr14:104145831-104146092(+)$1	261	107	112	14.9999
DD}EE	chr16:66864539-66864852(-)$1	313	208	213	14.9999
fffff	chrX:70469651-70469986(-)$1	335	189	194	14.9999
::::=	chr21:45557104-45557358(+)$1	254	45	50	14.9999
cc###	chr1:1341005-1341257(-)$1	252	20	25	14.9999
a22hh	chr14:78227256-78227525(-)$1	269	65	70	14.9999
:::hh	chr3:50098913-50099155(+)$1	242	63	68	14.9999
fffff	chr17:72860095-72860339(-)$1	244	103	108	14.9999
eeeee	chr16:3117344-3117583(+)$1	239	212	217	14.9999
IIIII	chr17:79532338-79532603(-)$1	265	233	238	14.9999
MMFFF	chr16:87377026-87377317(-)$1	291	110	115	14.9999
fffff	chr1:22216305-22216552(-)$1	247	47	52	14.9999
qdddd	chr7:142962140-142962388(+)$1	248	103	108	14.9999
ggggg	chr2:182757286-182757556(+)$1	270	51	56	14.9999
hh[dd	chr16:70698650-70698890(-)$1	240	77	82	14.9999
GGGGG	chr1:43396149-43396368(-)$1	219	68	73	14.9999
fffff	chr20:3172239-3172488(-)$1	249	56	61	14.9999
iiiii	chr21:37417701-37417951(-)$1	250	68	73	14.9999
333ee	chr22:31654325-31654604(+)$1	279	187	192	14.9999
IIII{	chr7:5429915-5430156(-)$1	241	31	36	14.9999
=a[cc	chr7:73021517-73021726(-)$1	209	81	86	14.9999
CCCII	chr16:279049-279353(-)$1	304	23	28	14.9999
eeeee	chr3:38167813-38168084(-)$1	271	164	169	14.9999
:eeee	chr9:74979409-74979681(-)$1	272	219	224	14.9999
e[ddd	chr9:139752458-139752721(+)$1	263	9	14	14.9999
^^^^^	chr4:1936883-1937184(+)$1	301	65	70	14.9999
mbb]c	chr1:162336931-162337186(+)$1	255	244	249	14.9999
!dddd	chr2:96858796-96859058(-)$1	262	111	116	14.9999
mmddd	chr16:28847368-28847611(+)$1	243	88	93	14.9999
[a[dd	chr8:6566346-6566593(+)$1	247	58	63	14.9999
eeeee	chr1:36755036-36755288(+)$1	252	18	23	14.9999
HHHHH	chr1:43212733-43213023(-)$1	290	19	24	14.9999
cc[ao	chr19:50905310-50905631(+)$1	321	83	88	14.9999
eeee2	chr20:61299181-61299434(+)$1	253	178	183	14.9999
LLLAL	chr6:35454069-35454358(-)$1	289	47	52	14.9999
dd[ee	chr1:11898639-11898887(+)$1	248	127	132	14.9999
ceeee	chr1:1019547-1019802(-)$1	255	122	127	14.9999
c"""a	chr1:43396083-43396310(-)$1	227	10	15	14.9999
eeqqq	chr19:1271398-1271635(+)$1	237	190	195	14.9999

#DB
...))	chr9:139723832-139724108(+)$1	1	8	13	14.9999
.((((	chr3:31705364-31705652(-)$1	1	75	80	14.9999
(((((	chr20:34241189-34241487(-)$1	1	172	177	14.9999
((((.	chr20:48759844-48760142(-)$1	1	148	153	14.9999
..(((	chr19:1398695-1399006(-)$1	1	122	127	14.9999
)))))	chr19:40740778-40741039(-)$1	1	124	129	14.9999
((((.	chr9:135930356-135930614(+)$1	1	17	22	14.9999
)))))	chr7:99631050-99631365(+)$1	1	45	50	14.9999
((...	chr20:43052819-43053100(+)$1	1	88	93	14.9999
....)	chr14:24607715-24607942(+)$1	1	98	103	14.9999
)))))	chr5:140021294-140021545(+)$1	1	205	210	14.9999
(((((	chr15:41099389-41099642(-)$1	1	163	168	14.9999
.))))	chr3:9965632-9965874(+)$1	1	35	40	14.9999
.((((	chr5:73931516-73931771(-)$1	1	27	32	14.9999
(..((	chr9:140347013-140347254(-)$1	1	138	143	14.9999
)).))	chr14:104145831-104146092(+)$1	1	107	112	14.9999
)).))	chr16:66864539-66864852(-)$1	1	208	213	14.9999
)))))	chrX:70469651-70469986(-)$1	1	189	194	14.9999
....(	chr21:45557104-45557358(+)$1	1	45	50	14.9999
((...	chr1:1341005-1341257(-)$1	1	20	25	14.9999
)..))	chr14:78227256-78227525(-)$1	1	65	70	14.9999
...((	chr3:50098913-50099155(+)$1	1	63	68	14.9999
(((((	chr17:72860095-72860339(-)$1	1	103	108	14.9999
)))))	chr16:3117344-3117583(+)$1	1	212	217	14.9999
)))))	chr17:79532338-79532603(-)$1	1	233	238	14.9999
..(((	chr16:87377026-87377317(-)$1	1	110	115	14.9999
(((((	chr1:22216305-22216552(-)$1	1	47	52	14.9999
.))))	chr7:142962140-142962388(+)$1	1	103	108	14.9999
)))))	chr2:182757286-182757556(+)$1	1	51	56	14.9999
((.((	chr16:70698650-70698890(-)$1	1	77	82	14.9999
)))))	chr1:43396149-43396368(-)$1	1	68	73	14.9999
)))))	chr20:3172239-3172488(-)$1	1	56	61	14.9999
)))))	chr21:37417701-37417951(-)$1	1	68	73	14.9999
...))	chr22:31654325-31654604(+)$1	1	187	192	14.9999
((((.	chr7:5429915-5430156(-)$1	1	31	36	14.9999
((.((	chr7:73021517-73021726(-)$1	1	81	86	14.9999
(((((	chr16:279049-279353(-)$1	1	23	28	14.9999
)))))	chr3:38167813-38168084(-)$1	1	164	169	14.9999
.((((	chr9:74979409-74979681(-)$1	1	219	224	14.9999
(.(((	chr9:139752458-139752721(+)$1	1	9	14	14.9999
.....	chr4:1936883-1937184(+)$1	1	65	70	14.9999
.)).)	chr1:162336931-162337186(+)$1	1	244	249	14.9999
.((((	chr2:96858796-96859058(-)$1	1	111	116	14.9999
..)))	chr16:28847368-28847611(+)$1	1	88	93	14.9999
.(.((	chr8:6566346-6566593(+)$1	1	58	63	14.9999
)))))	chr1:36755036-36755288(+)$1	1	18	23	14.9999
(((((	chr1:43212733-43213023(-)$1	1	19	24	14.9999
((.(.	chr19:50905310-50905631(+)$1	1	83	88	14.9999
)))).	chr20:61299181-61299434(+)$1	1	178	183	14.9999
...(.	chr6:35454069-35454358(-)$1	1	47	52	14.9999
((.((	chr1:11898639-11898887(+)$1	1	127	132	14.9999
)))))	chr1:1019547-1019802(-)$1	1	122	127	14.9999
(...(	chr1:43396083-43396310(-)$1	1	10	15	14.9999
((...	chr19:1271398-1271635(+)$1	1	190	195	14.9999

#PSSM
C : 0.99	
C : 0.99	
A : 0.99	
G : 0.99	
G : 0.98	g : 0.01	

#score	809.9999999999995
#seq	54
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_transcript_m3_run1.nuc.txt

#NT
AAGAUGAAG	chr2:65658981-65659331(-)$1	350	154	163	18.5517
AAGAAGAAG	chr11:65826670-65826910(+)$1	240	76	85	23.0344
AAGAAAAAG	chr14:56114642-56114938(+)$1	296	105	114	18.8965
GAGAAGAAG	chr20:17595404-17595628(-)$1	224	118	127	19.0689
aaggagaag	chr9:100773512-100773772(+)$1	260	40	49	18.7241
AAGCAGAAG	chr6:7581042-7581294(+)$1	252	88	97	18.5517
AAGAAAAAG	chr18:47015632-47015877(-)$1	245	140	149	18.8965
AGGAAGAAG	chr19:13054434-13054734(+)$1	300	147	156	18.8965
AAGAAGAAA	chr20:52831813-52832080(+)$1	267	131	140	19.3275
AAGAAGAAU	chr2:135893178-135893502(+)$1	324	145	154	19.1551
AAGAAGAAA	chr12:56511165-56511367(+)$1	202	112	121	19.3275
AAGAGGAAG	chr20:40161929-40162187(-)$1	258	138	147	18.5517
AAGAGGAAG	chr3:50102397-50102660(+)$1	263	220	229	18.5517
aagaaaaag	chr4:73968068-73968356(-)$1	288	158	167	18.8965
GAGAAGAAG	chr15:85085299-85085624(-)$1	325	157	166	19.0689
aagaagaag	chr16:24761943-24762236(+)$1	293	114	123	23.0344
AAGAAGCAG	chr1:146756937-146757204(+)$1	267	151	160	18.2931
AAGGAGAAG	chr2:190647788-190648097(-)$1	309	81	90	18.7241
AAGAAGAAG	chr2:153475262-153475619(+)$1	357	155	164	23.0344
AAGAAGAAG	chr8:30510854-30511132(-)$1	278	125	134	23.0344
aagaagaag	chr2:172546579-172546871(+)$1	292	168	177	23.0344
AAGAAGAAA	chr20:62624657-62624934(+)$1	277	116	125	19.3275
AAGAAGAAU	chr14:39648427-39648645(+)$1	218	101	110	19.1551
AAGAAAAAG	chr6:144800961-144801219(+)$1	258	20	29	18.8965
aggaagaag	chrX:76907586-76907927(-)$1	341	94	103	18.8965
AGGAAGAAG	chr12:56510870-56511092(+)$1	222	105	114	18.8965
AAGAAGAAG	chr5:177634045-177634330(+)$1	285	119	128	23.0344
AGGAAGAAG	chr11:65267926-65268137(+)$1	211	109	118	18.8965
aagaagaag	chr6:44218022-44218296(+)$1	274	149	158	23.0344
AAGAAGAAG	chr5:138658231-138658639(+)$1	408	261	270	23.0344
AAAAAGAAG	chr21:34931863-34932180(+)$1	317	114	123	18.5517
AAGAAGAAA	chr16:11990471-11990743(-)$1	272	149	158	19.3275
AAGGAGAAG	chr1:156713855-156714159(-)$1	304	151	160	18.7241
AACAAGAAG	chr6:26156887-26157209(+)$1	322	52	61	18.5517
CAGAAGAAG	chr15:69072332-69072573(-)$1	241	89	98	18.9827
AAGAAGAAG	chr6:108204141-108204418(-)$1	277	123	132	23.0344
AAGAAAAAG	chr5:77003964-77004248(-)$1	284	84	93	18.8965
AAGAAGGAG	chr14:21679866-21680096(-)$1	230	40	49	18.2931
CAGAAGAAG	chr14:39648288-39648550(+)$1	262	49	58	18.9827
aagaagaag	chr11:35684881-35685240(+)$1	359	214	223	23.0344
AAGAAGAAG	chr2:136528040-136528318(+)$1	278	167	176	23.0344
aggaagaag	chr14:23549748-23550006(-)$1	258	100	109	18.8965
AAAAAGAAG	chr1:205689528-205689826(-)$1	298	60	69	18.5517
AAGAUGAAG	chr2:63220925-63221192(+)$1	267	170	179	18.5517
AACAAGAAG	chr14:39649657-39649933(+)$1	276	172	181	18.5517
AAGUAGAAG	chrX:108904669-108904921(-)$1	252	101	110	18.5517
CAGAAGAAG	chr14:21896007-21896274(-)$1	267	8	17	18.9827
AAGAAGAUG	chr17:62498456-62498664(-)$1	208	66	75	18.3793
AAGAAGAAG	chr4:2930060-2930421(+)$1	361	127	136	23.0344
AAGAAGAAC	chr9:123777375-123777631(-)$1	256	120	129	19.0689
gagaagaag	chr9:131456203-131456422(+)$1	219	2	11	19.0689
AAGAAGAGG	chr1:43899618-43899908(+)$1	290	143	152	18.4655
AAGAAGAAC	chr2:63182568-63182856(+)$1	288	102	111	19.0689
UAGAAGAAG	chr11:93469257-93469548(-)$1	291	130	139	18.8103
aagaagagg	chr17:16029295-16029630(-)$1	335	150	159	18.4655
AAGAAGAAA	chr1:52252106-52252402(+)$1	296	133	142	19.3275
GAGAAGAAG	chr19:6381269-6381568(-)$1	299	180	189	19.0689

#otherMatches

#Struct PSSM
qccc4444f	chr20:17934561-17934815(-)$1	254	139	148	19.1551
]========	chr2:65658981-65659331(-)$1	350	154	163	18.5517
qqqqqqqqc	chr11:65826670-65826910(+)$1	240	76	85	23.0344
qqqqqqqqb	chr14:56114642-56114938(+)$1	296	105	114	18.8965
::::::::d	chr20:17595404-17595628(-)$1	224	118	127	19.0689
""a^^^^^^	chr9:100773512-100773772(+)$1	260	40	49	18.7241
NNNCCCKKE	chr6:7581042-7581294(+)$1	252	88	97	18.5517
tttttttte	chr18:47015632-47015877(-)$1	245	140	149	18.8965
:::::::::	chr19:13054434-13054734(+)$1	300	147	156	18.8965
c99999999	chr20:52831813-52832080(+)$1	267	131	140	19.3275
cc]dddd]g	chr2:135893178-135893502(+)$1	324	145	154	19.1551
+++++++++	chr12:56511165-56511367(+)$1	202	112	121	19.3275
qqqqqqqcc	chr20:40161929-40162187(-)$1	258	138	147	18.5517
$hhhhhhhh	chr3:50102397-50102660(+)$1	263	220	229	18.5517
H@@@@@@@@	chr4:73968068-73968356(-)$1	288	158	167	18.8965
+++++++dd	chr15:85085299-85085624(-)$1	325	157	166	19.0689
22ccc5555	chr16:24761943-24762236(+)$1	293	114	123	23.0344
^^^^^^^^^	chr1:146756937-146757204(+)$1	267	151	160	18.2931
d:BBKKFFF	chr2:190647788-190648097(-)$1	309	81	90	18.7241
:::::cccm	chr2:153475262-153475619(+)$1	357	155	164	23.0344
oobb]bb]b	chr8:30510854-30511132(-)$1	278	125	134	23.0344
:::::::::	chr2:172546579-172546871(+)$1	292	168	177	23.0344
:::::::::	chr20:62624657-62624934(+)$1	277	116	125	19.3275
ggggggg:F	chr14:39648427-39648645(+)$1	218	101	110	19.1551
qccc22bb]	chr6:144800961-144801219(+)$1	258	20	29	18.8965
qqqqqqqdd	chrX:76907586-76907927(-)$1	341	94	103	18.8965
eeee66666	chr12:56510870-56511092(+)$1	222	105	114	18.8965
lldddd:ff	chr5:177634045-177634330(+)$1	285	119	128	23.0344
>>>>>>>>>	chr11:65267926-65268137(+)$1	211	109	118	18.8965
:::::::::	chr6:44218022-44218296(+)$1	274	149	158	23.0344
444hhhhhh	chr5:138658231-138658639(+)$1	408	261	270	23.0344
7777777bb	chr21:34931863-34932180(+)$1	317	114	123	18.5517
:::::::::	chr16:11990471-11990743(-)$1	272	149	158	19.3275
:::::::::	chr1:156713855-156714159(-)$1	304	151	160	18.7241
tttttdddd	chr6:26156887-26157209(+)$1	322	52	61	18.5517
mmddddggg	chr15:69072332-69072573(-)$1	241	89	98	18.9827
nnnndddd3	chr6:108204141-108204418(-)$1	277	123	132	23.0344
gggggg22c	chr5:77003964-77004248(-)$1	284	84	93	18.8965
COOOOOOJJ	chr14:21679866-21680096(-)$1	230	40	49	18.2931
c:IIIIIII	chr14:39648288-39648550(+)$1	262	49	58	18.9827
qqqqqqqqb	chr11:35684881-35685240(+)$1	359	214	223	23.0344
d::::::::	chr2:136528040-136528318(+)$1	278	167	176	23.0344
44bb:::::	chr14:23549748-23550006(-)$1	258	100	109	18.8965
e]ffffff:	chr1:205689528-205689826(-)$1	298	60	69	18.5517
hhhhh"""d	chr2:63220925-63221192(+)$1	267	170	179	18.5517
:::::::::	chr14:39649657-39649933(+)$1	276	172	181	18.5517
GGGG:::::	chrX:108904669-108904921(-)$1	252	101	110	18.5517
GGGG::::b	chr14:21896007-21896274(-)$1	267	8	17	18.9827
:::::dddd	chr17:62498456-62498664(-)$1	208	66	75	18.3793
LA{CCC:ee	chr4:2930060-2930421(+)$1	361	127	136	23.0344
pdddd333a	chr9:123777375-123777631(-)$1	256	120	129	19.0689
:::::::::	chr9:131456203-131456422(+)$1	219	2	11	19.0689
:::::eeee	chr1:43899618-43899908(+)$1	290	143	152	18.4655
ee::ggggg	chr2:63182568-63182856(+)$1	288	102	111	19.0689
fff22ccc2	chr11:93469257-93469548(-)$1	291	130	139	18.8103
^^^^^dddd	chr17:16029295-16029630(-)$1	335	150	159	18.4655
+++++++++	chr1:52252106-52252402(+)$1	296	133	142	19.3275
ssssssssc	chr19:6381269-6381568(-)$1	299	180	189	19.0689

#DB
.)))....)	chr20:17934561-17934815(-)$1	1	139	148	19.1551
.))))))))	chr2:65658981-65659331(-)$1	1	154	163	18.5517
........)	chr11:65826670-65826910(+)$1	1	76	85	23.0344
........)	chr14:56114642-56114938(+)$1	1	105	114	18.8965
........(	chr20:17595404-17595628(-)$1	1	118	127	19.0689
..(......	chr9:100773512-100773772(+)$1	1	40	49	18.7241
...(((..(	chr6:7581042-7581294(+)$1	1	88	97	18.5517
........)	chr18:47015632-47015877(-)$1	1	140	149	18.8965
.........	chr19:13054434-13054734(+)$1	1	147	156	18.8965
)........	chr20:52831813-52832080(+)$1	1	131	140	19.3275
)).)))).)	chr2:135893178-135893502(+)$1	1	145	154	19.1551
.........	chr12:56511165-56511367(+)$1	1	112	121	19.3275
.......))	chr20:40161929-40162187(-)$1	1	138	147	18.5517
.((((((((	chr3:50102397-50102660(+)$1	1	220	229	18.5517
)........	chr4:73968068-73968356(-)$1	1	158	167	18.8965
.......((	chr15:85085299-85085624(-)$1	1	157	166	19.0689
..)))....	chr16:24761943-24762236(+)$1	1	114	123	23.0344
.........	chr1:146756937-146757204(+)$1	1	151	160	18.2931
).((..(((	chr2:190647788-190648097(-)$1	1	81	90	18.7241
.....(((.	chr2:153475262-153475619(+)$1	1	155	164	23.0344
..)).)).)	chr8:30510854-30511132(-)$1	1	125	134	23.0344
.........	chr2:172546579-172546871(+)$1	1	168	177	23.0344
.........	chr20:62624657-62624934(+)$1	1	116	125	19.3275
))))))).)	chr14:39648427-39648645(+)$1	1	101	110	19.1551
.)))..)).	chr6:144800961-144801219(+)$1	1	20	29	18.8965
.......))	chrX:76907586-76907927(-)$1	1	94	103	18.8965
)))).....	chr12:56510870-56511092(+)$1	1	105	114	18.8965
..)))).((	chr5:177634045-177634330(+)$1	1	119	128	23.0344
.........	chr11:65267926-65268137(+)$1	1	109	118	18.8965
.........	chr6:44218022-44218296(+)$1	1	149	158	23.0344
...))))))	chr5:138658231-138658639(+)$1	1	261	270	23.0344
.......))	chr21:34931863-34932180(+)$1	1	114	123	18.5517
.........	chr16:11990471-11990743(-)$1	1	149	158	19.3275
.........	chr1:156713855-156714159(-)$1	1	151	160	18.7241
.....))))	chr6:26156887-26157209(+)$1	1	52	61	18.5517
..)))))))	chr15:69072332-69072573(-)$1	1	89	98	18.9827
....)))).	chr6:108204141-108204418(-)$1	1	123	132	23.0344
))))))..)	chr5:77003964-77004248(-)$1	1	84	93	18.8965
(......((	chr14:21679866-21680096(-)$1	1	40	49	18.2931
).(((((((	chr14:39648288-39648550(+)$1	1	49	58	18.9827
........)	chr11:35684881-35685240(+)$1	1	214	223	23.0344
)........	chr2:136528040-136528318(+)$1	1	167	176	23.0344
..)).....	chr14:23549748-23550006(-)$1	1	100	109	18.8965
).)))))).	chr1:205689528-205689826(-)$1	1	60	69	18.5517
(((((...(	chr2:63220925-63221192(+)$1	1	170	179	18.5517
.........	chr14:39649657-39649933(+)$1	1	172	181	18.5517
((((.....	chrX:108904669-108904921(-)$1	1	101	110	18.5517
((((....(	chr14:21896007-21896274(-)$1	1	8	17	18.9827
.....((((	chr17:62498456-62498664(-)$1	1	66	75	18.3793
.(.(((.((	chr4:2930060-2930421(+)$1	1	127	136	23.0344
.))))...)	chr9:123777375-123777631(-)$1	1	120	129	19.0689
.........	chr9:131456203-131456422(+)$1	1	2	11	19.0689
.....((((	chr1:43899618-43899908(+)$1	1	143	152	18.4655
))..(((((	chr2:63182568-63182856(+)$1	1	102	111	19.0689
)))..))).	chr11:93469257-93469548(-)$1	1	130	139	18.8103
.....))))	chr17:16029295-16029630(-)$1	1	150	159	18.4655
.........	chr1:52252106-52252402(+)$1	1	133	142	19.3275
........)	chr19:6381269-6381568(-)$1	1	180	189	19.0689

#PSSM
A : 0.70	a : 0.15	G : 0.05	C : 0.05	g : 0.01	U : 0.01	
A : 0.77	a : 0.13	G : 0.05	g : 0.03	
G : 0.75	g : 0.17	A : 0.03	C : 0.03	
A : 0.75	a : 0.15	G : 0.03	g : 0.01	C : 0.01	U : 0.01	
A : 0.75	a : 0.17	U : 0.03	G : 0.03	
G : 0.75	g : 0.15	A : 0.06	a : 0.01	
A : 0.79	a : 0.17	C : 0.01	G : 0.01	
A : 0.79	a : 0.15	U : 0.01	G : 0.01	g : 0.01	
G : 0.65	g : 0.17	A : 0.08	U : 0.05	C : 0.03	

#score	1143.2413793103449
#seq	58
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_transcript_m1_run1.nuc.txt

#NT
GUGG	chr2:21251032-21251253(-)$1	221	2	6	12.0000
GUGG	chr17:37900819-37901060(+)$1	241	7	11	12.0000
GUGG	chr12:6646598-6646845(+)$1	247	89	93	12.0000
GUGG	chr3:52263695-52263942(-)$1	247	11	15	12.0000
GUGG	chr20:32878159-32878397(-)$1	238	197	201	12.0000
GUGG	chr16:70713260-70713536(-)$1	276	67	71	12.0000
GUGG	chr2:241536547-241536809(+)$1	262	31	35	12.0000
GUGG	chr9:130213405-130213659(-)$1	254	115	119	12.0000
GUGG	chr7:2698064-2698320(+)$1	256	39	43	12.0000
GUGG	chr19:1068713-1068981(+)$1	268	59	63	12.0000
GUGG	chr3:195716533-195716828(-)$1	295	102	106	12.0000
GUGG	chr9:108210568-108210822(+)$1	254	1	5	12.0000
GUGG	chr19:54963863-54964133(+)$1	270	16	20	12.0000
GUGG	chr17:41464609-41464862(-)$1	253	43	47	12.0000
GUGG	chr19:57351491-57351775(-)$1	284	4	8	12.0000
gugg	chr17:79885124-79885379(-)$1	255	7	11	12.0000
gugg	chr2:219267220-219267467(+)$1	247	7	11	12.0000
GUGG	chr14:24619371-24619627(+)$1	256	49	53	12.0000
GUGG	chr17:4789222-4789464(+)$1	242	60	64	12.0000
GUGG	chr20:3173215-3173489(-)$1	274	58	62	12.0000
GUGG	chr4:1794998-1795244(+)$1	246	29	33	12.0000
GUGG	chr20:60899167-60899410(-)$1	243	34	38	12.0000
GUGG	chr20:17949104-17949356(-)$1	252	25	29	12.0000
GUGG	chr7:100286047-100286292(-)$1	245	9	13	12.0000
gUGG	chr1:182808608-182808959(+)$1	351	39	43	12.0000
GUGG	chr3:38167376-38167690(-)$1	314	43	47	12.0000
GUGG	chr3:52832121-52832355(+)$1	234	204	208	12.0000
GUGG	chr17:40063734-40063988(-)$1	254	89	93	12.0000
GUGG	chr19:3193519-3193759(+)$1	240	9	13	12.0000
GUGG	chr14:23444001-23444263(-)$1	262	37	41	12.0000
GUGG	chr1:228296533-228296792(-)$1	259	158	162	12.0000
GUGG	chr17:36878220-36878480(+)$1	260	139	143	12.0000
gugg	chr19:45315274-45315511(+)$1	237	1	5	12.0000
GUGG	chr21:46897818-46898065(+)$1	247	102	106	12.0000
GUGG	chr11:706554-706805(+)$1	251	53	57	12.0000
GUGG	chr8:22423631-22423868(+)$1	237	87	91	12.0000
GUGG	chr20:44521409-44521661(+)$1	252	152	156	12.0000
GUGG	chr19:45873512-45873783(-)$1	271	55	59	12.0000
GUGG	chr12:96389249-96389528(-)$1	279	53	57	12.0000
GUGG	chr21:40720269-40720487(-)$1	218	41	45	12.0000
GUGG	chr19:803622-803856(+)$1	234	46	50	12.0000
GUGG	chr7:139044948-139045196(+)$1	248	145	149	12.0000
GUGG	chr11:62368664-62368890(-)$1	226	71	75	12.0000
GUGG	chr3:47890050-47890274(+)$1	224	23	27	12.0000
GUGG	chr2:111435344-111435631(-)$1	287	100	104	12.0000
GUGG	chr16:1816756-1817043(+)$1	287	48	52	12.0000
GUGG	chr16:89972729-89972973(+)$1	244	51	55	12.0000
GUGG	chr3:8671140-8671405(-)$1	265	15	19	12.0000
GUGG	chr22:39916810-39917090(+)$1	280	5	9	12.0000
gugg	chr14:23790670-23790943(+)$1	273	102	106	12.0000
gugg	chr17:72758417-72758663(+)$1	246	29	33	12.0000
GUGG	chr22:31654319-31654586(+)$1	267	161	165	12.0000
GUGG	chr19:1104629-1104872(+)$1	243	1	5	12.0000
GUGG	chr1:1982128-1982421(+)$1	293	190	194	12.0000
GUGG	chr1:173834196-173834438(-)$1	242	46	50	12.0000
GUGG	chr1:160261595-160261860(-)$1	265	32	36	12.0000
GUGG	chr12:69633434-69633682(+)$1	248	4	8	12.0000
GUGG	chr17:17722912-17723152(-)$1	240	65	69	12.0000
GUGG	chr1:3383591-3383829(+)$1	238	49	53	12.0000
GUGG	chr22:46748239-46748485(+)$1	246	33	37	12.0000
GUGG	chr11:65380786-65381009(-)$1	223	30	34	12.0000
GUGG	chr7:2580141-2580380(-)$1	239	47	51	12.0000
gugg	chr17:40491129-40491376(-)$1	247	141	145	12.0000
GUGG	chr4:1800921-1801196(+)$1	275	118	122	12.0000
GUGG	chr9:116840179-116840453(-)$1	274	99	103	12.0000
GUGG	chr20:17948789-17949045(-)$1	256	116	120	12.0000
GUGG	chr8:142010938-142011179(-)$1	241	23	27	12.0000
GUGG	chr1:155279555-155279854(+)$1	299	52	56	12.0000
GUGG	chr19:19456460-19456720(+)$1	260	90	94	12.0000
GUGG	chr19:2123711-2123925(-)$1	214	19	23	12.0000
GUGG	chr3:51533679-51533931(-)$1	252	47	51	12.0000
gugg	chr2:61764486-61764748(-)$1	262	122	126	12.0000
GUGG	chr6:160148500-160148742(+)$1	242	55	59	12.0000
GUGG	chr19:18543362-18543603(+)$1	241	20	24	12.0000
GUGG	chr17:56439711-56439974(-)$1	263	79	83	12.0000
GUGG	chr12:49182327-49182597(-)$1	270	3	7	12.0000
GUGG	chr19:878362-878625(-)$1	263	2	6	12.0000
GUGG	chr3:133969085-133969357(-)$1	272	95	99	12.0000
GUGG	chr17:72759614-72759887(+)$1	273	54	58	12.0000
GUGG	chr22:43023333-43023655(-)$1	322	20	24	12.0000
GUGG	chr20:2639090-2639337(-)$1	247	31	35	12.0000
GUGG	chrX:20284126-20284377(-)$1	251	194	198	12.0000
GUGG	chr20:37059548-37059800(-)$1	252	121	125	12.0000
GUGG	chr11:65375546-65375811(-)$1	265	85	89	12.0000
gugg	chr17:80055756-80056067(-)$1	311	107	111	12.0000
GUGG	chr12:120582155-120582416(-)$1	261	127	131	12.0000
GUGG	chr17:80188412-80188671(+)$1	259	80	84	12.0000
GUGG	chr2:178081439-178081662(+)$1	223	15	19	12.0000

#otherMatches

#Struct PSSM
ggff	chr7:65552138-65552440(+)$1	302	47	51	12.0000
:ddd	chr2:21251032-21251253(-)$1	221	2	6	12.0000
eenn	chr17:37900819-37901060(+)$1	241	7	11	12.0000
pppp	chr12:6646598-6646845(+)$1	247	89	93	12.0000
cccc	chr3:52263695-52263942(-)$1	247	11	15	12.0000
ee[a	chr20:32878159-32878397(-)$1	238	197	201	12.0000
gggg	chr16:70713260-70713536(-)$1	276	67	71	12.0000
ccpp	chr2:241536547-241536809(+)$1	262	31	35	12.0000
eeee	chr9:130213405-130213659(-)$1	254	115	119	12.0000
ddde	chr7:2698064-2698320(+)$1	256	39	43	12.0000
]bb4	chr19:1068713-1068981(+)$1	268	59	63	12.0000
ddd[	chr3:195716533-195716828(-)$1	295	102	106	12.0000
:::c	chr9:108210568-108210822(+)$1	254	1	5	12.0000
{A:d	chr19:54963863-54964133(+)$1	270	16	20	12.0000
gg::	chr17:41464609-41464862(-)$1	253	43	47	12.0000
::DD	chr19:57351491-57351775(-)$1	284	4	8	12.0000
HHHH	chr17:79885124-79885379(-)$1	255	7	11	12.0000
:ddd	chr2:219267220-219267467(+)$1	247	7	11	12.0000
dd::	chr14:24619371-24619627(+)$1	256	49	53	12.0000
HHHH	chr17:4789222-4789464(+)$1	242	60	64	12.0000
b]hh	chr20:3173215-3173489(-)$1	274	58	62	12.0000
FMMM	chr4:1794998-1795244(+)$1	246	29	33	12.0000
dddd	chr20:60899167-60899410(-)$1	243	34	38	12.0000
oocc	chr20:17949104-17949356(-)$1	252	25	29	12.0000
!iii	chr7:100286047-100286292(-)$1	245	9	13	12.0000
fffl	chr1:182808608-182808959(+)$1	351	39	43	12.0000
ffff	chr3:38167376-38167690(-)$1	314	43	47	12.0000
DD}D	chr3:52832121-52832355(+)$1	234	204	208	12.0000
GGGG	chr17:40063734-40063988(-)$1	254	89	93	12.0000
FFF:	chr19:3193519-3193759(+)$1	240	9	13	12.0000
ggg[	chr14:23444001-23444263(-)$1	262	37	41	12.0000
eeer	chr1:228296533-228296792(-)$1	259	158	162	12.0000
eehh	chr17:36878220-36878480(+)$1	260	139	143	12.0000
GGGG	chr19:45315274-45315511(+)$1	237	1	5	12.0000
dd22	chr21:46897818-46898065(+)$1	247	102	106	12.0000
!ddd	chr11:706554-706805(+)$1	251	53	57	12.0000
e[bb	chr8:22423631-22423868(+)$1	237	87	91	12.0000
Gggg	chr20:44521409-44521661(+)$1	252	152	156	12.0000
::::	chr19:45873512-45873783(-)$1	271	55	59	12.0000
ddff	chr12:96389249-96389528(-)$1	279	53	57	12.0000
[a[e	chr21:40720269-40720487(-)$1	218	41	45	12.0000
lllb	chr19:803622-803856(+)$1	234	46	50	12.0000
EEEE	chr7:139044948-139045196(+)$1	248	145	149	12.0000
[a[d	chr11:62368664-62368890(-)$1	226	71	75	12.0000
ddd[	chr3:47890050-47890274(+)$1	224	23	27	12.0000
BB{D	chr2:111435344-111435631(-)$1	287	100	104	12.0000
[ddd	chr16:1816756-1817043(+)$1	287	48	52	12.0000
iii2	chr16:89972729-89972973(+)$1	244	51	55	12.0000
HHHH	chr3:8671140-8671405(-)$1	265	15	19	12.0000
cc[a	chr22:39916810-39917090(+)$1	280	5	9	12.0000
!a[b	chr14:23790670-23790943(+)$1	273	102	106	12.0000
JJJJ	chr17:72758417-72758663(+)$1	246	29	33	12.0000
c]cc	chr22:31654319-31654586(+)$1	267	161	165	12.0000
eeee	chr19:1104629-1104872(+)$1	243	1	5	12.0000
ffff	chr1:1982128-1982421(+)$1	293	190	194	12.0000
LLDD	chr1:173834196-173834438(-)$1	242	46	50	12.0000
EE::	chr1:160261595-160261860(-)$1	265	32	36	12.0000
D{EE	chr12:69633434-69633682(+)$1	248	4	8	12.0000
::FF	chr17:17722912-17723152(-)$1	240	65	69	12.0000
ffff	chr1:3383591-3383829(+)$1	238	49	53	12.0000
rr==	chr22:46748239-46748485(+)$1	246	33	37	12.0000
ddgg	chr11:65380786-65381009(-)$1	223	30	34	12.0000
dd]b	chr7:2580141-2580380(-)$1	239	47	51	12.0000
===b	chr17:40491129-40491376(-)$1	247	141	145	12.0000
FFFF	chr4:1800921-1801196(+)$1	275	118	122	12.0000
DDFF	chr9:116840179-116840453(-)$1	274	99	103	12.0000
cc:F	chr20:17948789-17949045(-)$1	256	116	120	12.0000
[ddd	chr8:142010938-142011179(-)$1	241	23	27	12.0000
dddd	chr1:155279555-155279854(+)$1	299	52	56	12.0000
EEEE	chr19:19456460-19456720(+)$1	260	90	94	12.0000
gggg	chr19:2123711-2123925(-)$1	214	19	23	12.0000
DDDD	chr3:51533679-51533931(-)$1	252	47	51	12.0000
]ccc	chr2:61764486-61764748(-)$1	262	122	126	12.0000
eeee	chr6:160148500-160148742(+)$1	242	55	59	12.0000
]aee	chr19:18543362-18543603(+)$1	241	20	24	12.0000
eeee	chr17:56439711-56439974(-)$1	263	79	83	12.0000
FFFF	chr12:49182327-49182597(-)$1	270	3	7	12.0000
::::	chr19:878362-878625(-)$1	263	2	6	12.0000
bbll	chr3:133969085-133969357(-)$1	272	95	99	12.0000
2ddd	chr17:72759614-72759887(+)$1	273	54	58	12.0000
LLCC	chr22:43023333-43023655(-)$1	322	20	24	12.0000
ccbb	chr20:2639090-2639337(-)$1	247	31	35	12.0000
eeII	chrX:20284126-20284377(-)$1	251	194	198	12.0000
4hhh	chr20:37059548-37059800(-)$1	252	121	125	12.0000
dddd	chr11:65375546-65375811(-)$1	265	85	89	12.0000
eeee	chr17:80055756-80056067(-)$1	311	107	111	12.0000
gggg	chr12:120582155-120582416(-)$1	261	127	131	12.0000
{DDD	chr17:80188412-80188671(+)$1	259	80	84	12.0000
FFFM	chr2:178081439-178081662(+)$1	223	15	19	12.0000

#DB
((((	chr7:65552138-65552440(+)$1	1	47	51	12.0000
.(((	chr2:21251032-21251253(-)$1	1	2	6	12.0000
((..	chr17:37900819-37901060(+)$1	1	7	11	12.0000
....	chr12:6646598-6646845(+)$1	1	89	93	12.0000
((((	chr3:52263695-52263942(-)$1	1	11	15	12.0000
((.(	chr20:32878159-32878397(-)$1	1	197	201	12.0000
))))	chr16:70713260-70713536(-)$1	1	67	71	12.0000
((..	chr2:241536547-241536809(+)$1	1	31	35	12.0000
))))	chr9:130213405-130213659(-)$1	1	115	119	12.0000
((((	chr7:2698064-2698320(+)$1	1	39	43	12.0000
.)).	chr19:1068713-1068981(+)$1	1	59	63	12.0000
(((.	chr3:195716533-195716828(-)$1	1	102	106	12.0000
...(	chr9:108210568-108210822(+)$1	1	1	5	12.0000
.(.(	chr19:54963863-54964133(+)$1	1	16	20	12.0000
))..	chr17:41464609-41464862(-)$1	1	43	47	12.0000
..((	chr19:57351491-57351775(-)$1	1	4	8	12.0000
((((	chr17:79885124-79885379(-)$1	1	7	11	12.0000
.(((	chr2:219267220-219267467(+)$1	1	7	11	12.0000
))..	chr14:24619371-24619627(+)$1	1	49	53	12.0000
((((	chr17:4789222-4789464(+)$1	1	60	64	12.0000
).))	chr20:3173215-3173489(-)$1	1	58	62	12.0000
(...	chr4:1794998-1795244(+)$1	1	29	33	12.0000
((((	chr20:60899167-60899410(-)$1	1	34	38	12.0000
..))	chr20:17949104-17949356(-)$1	1	25	29	12.0000
.(((	chr7:100286047-100286292(-)$1	1	9	13	12.0000
(((.	chr1:182808608-182808959(+)$1	1	39	43	12.0000
((((	chr3:38167376-38167690(-)$1	1	43	47	12.0000
)).)	chr3:52832121-52832355(+)$1	1	204	208	12.0000
))))	chr17:40063734-40063988(-)$1	1	89	93	12.0000
(((.	chr19:3193519-3193759(+)$1	1	9	13	12.0000
(((.	chr14:23444001-23444263(-)$1	1	37	41	12.0000
(((.	chr1:228296533-228296792(-)$1	1	158	162	12.0000
((((	chr17:36878220-36878480(+)$1	1	139	143	12.0000
((((	chr19:45315274-45315511(+)$1	1	1	5	12.0000
))..	chr21:46897818-46898065(+)$1	1	102	106	12.0000
.(((	chr11:706554-706805(+)$1	1	53	57	12.0000
(.((	chr8:22423631-22423868(+)$1	1	87	91	12.0000
((((	chr20:44521409-44521661(+)$1	1	152	156	12.0000
....	chr19:45873512-45873783(-)$1	1	55	59	12.0000
))))	chr12:96389249-96389528(-)$1	1	53	57	12.0000
.(.(	chr21:40720269-40720487(-)$1	1	41	45	12.0000
...)	chr19:803622-803856(+)$1	1	46	50	12.0000
))))	chr7:139044948-139045196(+)$1	1	145	149	12.0000
.(.(	chr11:62368664-62368890(-)$1	1	71	75	12.0000
(((.	chr3:47890050-47890274(+)$1	1	23	27	12.0000
((.(	chr2:111435344-111435631(-)$1	1	100	104	12.0000
.(((	chr16:1816756-1817043(+)$1	1	48	52	12.0000
))).	chr16:89972729-89972973(+)$1	1	51	55	12.0000
((((	chr3:8671140-8671405(-)$1	1	15	19	12.0000
((.(	chr22:39916810-39917090(+)$1	1	5	9	12.0000
.(.(	chr14:23790670-23790943(+)$1	1	102	106	12.0000
((((	chr17:72758417-72758663(+)$1	1	29	33	12.0000
).))	chr22:31654319-31654586(+)$1	1	161	165	12.0000
((((	chr19:1104629-1104872(+)$1	1	1	5	12.0000
((((	chr1:1982128-1982421(+)$1	1	190	194	12.0000
..((	chr1:173834196-173834438(-)$1	1	46	50	12.0000
((..	chr1:160261595-160261860(-)$1	1	32	36	12.0000
(.((	chr12:69633434-69633682(+)$1	1	4	8	12.0000
..((	chr17:17722912-17723152(-)$1	1	65	69	12.0000
))))	chr1:3383591-3383829(+)$1	1	49	53	12.0000
..))	chr22:46748239-46748485(+)$1	1	33	37	12.0000
((((	chr11:65380786-65381009(-)$1	1	30	34	12.0000
)).)	chr7:2580141-2580380(-)$1	1	47	51	12.0000
((((	chr17:40491129-40491376(-)$1	1	141	145	12.0000
))))	chr4:1800921-1801196(+)$1	1	118	122	12.0000
))))	chr9:116840179-116840453(-)$1	1	99	103	12.0000
)).)	chr20:17948789-17949045(-)$1	1	116	120	12.0000
.(((	chr8:142010938-142011179(-)$1	1	23	27	12.0000
((((	chr1:155279555-155279854(+)$1	1	52	56	12.0000
((((	chr19:19456460-19456720(+)$1	1	90	94	12.0000
))))	chr19:2123711-2123925(-)$1	1	19	23	12.0000
((((	chr3:51533679-51533931(-)$1	1	47	51	12.0000
.)))	chr2:61764486-61764748(-)$1	1	122	126	12.0000
))))	chr6:160148500-160148742(+)$1	1	55	59	12.0000
.)))	chr19:18543362-18543603(+)$1	1	20	24	12.0000
))))	chr17:56439711-56439974(-)$1	1	79	83	12.0000
((((	chr12:49182327-49182597(-)$1	1	3	7	12.0000
....	chr19:878362-878625(-)$1	1	2	6	12.0000
((..	chr3:133969085-133969357(-)$1	1	95	99	12.0000
.)))	chr17:72759614-72759887(+)$1	1	54	58	12.0000
..((	chr22:43023333-43023655(-)$1	1	20	24	12.0000
((((	chr20:2639090-2639337(-)$1	1	31	35	12.0000
))))	chrX:20284126-20284377(-)$1	1	194	198	12.0000
.)))	chr20:37059548-37059800(-)$1	1	121	125	12.0000
((((	chr11:65375546-65375811(-)$1	1	85	89	12.0000
))))	chr17:80055756-80056067(-)$1	1	107	111	12.0000
((((	chr12:120582155-120582416(-)$1	1	127	131	12.0000
.(((	chr17:80188412-80188671(+)$1	1	80	84	12.0000
(((.	chr2:178081439-178081662(+)$1	1	15	19	12.0000

#PSSM
G : 0.89	g : 0.10	
U : 0.91	u : 0.08	
G : 0.91	g : 0.08	
G : 0.91	g : 0.08	

#score	1068.0000000000007
#seq	89
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_UTR_m3_run2.nuc.txt

#NT
GCCCUCCUUCCCAUCCC	chr1:27633631-27633878(+)$1	247	106	123	19.9285
uccuuuccucuuuccuc	chr17:8063730-8064002(-)$1	272	225	242	22.1904
ucccucccuccuuucuu	chr20:251441-251710(-)$1	269	69	86	29.6904
GCCCUCCUUCCCAUCCC	chr1:27633695-27633942(+)$1	247	42	59	19.9285
ucccucccuacccuccc	chr4:726033-726340(+)$1	307	62	79	24.2142
ucccuuccucccuuuuc	chr17:7154844-7155064(-)$1	220	72	89	24.2142
ucccucccuccuuucuc	chr16:69733952-69734244(+)$1	292	128	145	32.6666
CCCCACCCUCCUUCCUC	chr2:97541666-97541893(-)$1	227	198	215	26.2380
ucccuuccucuugucuc	chrX:56592276-56592517(+)$1	241	111	128	26.1190
UCUCUCCCUCCUCCCCU	chr19:10579574-10579847(+)$1	273	1	18	21.4761
Ucccucccucuucucuc	chr9:132900673-132901068(+)$1	395	9	26	30.4047
CCCCUCCCUGCUGUCCC	chr19:8468334-8468593(+)$1	259	172	189	22.7857
CCCCACCCUCCUUCCUC	chr2:97541587-97541818(-)$1	231	123	140	26.2380
CCCCUCCAUCCUUUCUU	chr20:33298267-33298551(+)$1	284	91	108	23.5000
ucccuuccucuugucuc	chrX:56592343-56592608(+)$1	265	44	61	26.1190
CCCUGcccucccuuccc	chr17:80708604-80708866(+)$1	262	31	48	18.8571
ucccuuccucuugucuc	chrX:56592317-56592543(+)$1	226	70	87	26.1190
cccuucccuucccuuuc	chr19:17452804-17453112(+)$1	308	62	79	17.5476
UCCCUCCCUCUUCCCUC	chrX:133930415-133930642(-)$1	227	72	89	29.0952
gcccuccccCUUGUCCC	chr10:121355842-121356127(-)$1	285	110	127	19.0952
ucccucccuccuuucuu	chr20:251510-251775(-)$1	265	134	151	29.6904
cccccuccccccuccuc	chr13:42894552-42894816(+)$1	264	94	111	16.9523
ucccucccuccuccuuu	chrX:122735101-122735364(-)$1	263	31	48	25.0476
ucccucccuccuuccuu	chr7:116608303-116608597(+)$1	294	36	53	28.3809
acccccccuuccuccuc	chr12:53846023-53846230(+)$1	207	2	19	18.8571
uuccucccuccucccuc	chr16:87733879-87734235(-)$1	356	109	126	27.7857
UCCCUUCCUCCCCAGUC	chr1:155260134-155260353(-)$1	219	33	50	21.3571
CCACUGCCUCCUCUCCC	chr11:66044229-66044466(+)$1	237	14	31	20.6428
uucccccuuccucccuc	chr11:61664897-61665240(-)$1	343	93	110	20.2857
CCCCUCCCUCCGAGCUG	chr19:6494493-6494816(-)$1	323	214	231	19.5714
uuccgcccucccuucuu	chr22:35690691-35690988(+)$1	297	88	105	20.1666
ucccucccuccuccuuu	chrX:122735192-122735424(-)$1	232	91	108	25.0476
ucccuuccuccucuccc	chr5:112929774-112930106(+)$1	332	134	151	27.6666
ccccagccUCCUAUUUC	chr8:42878812-42879057(+)$1	245	82	99	19.2142
Gccuucccuccccuccc	chr11:66010846-66011124(+)$1	278	61	78	21.9523
UCCCUCCCUCUUCCCUC	chrX:133930316-133930576(-)$1	260	6	23	29.0952
UCCCUGGCUACUCUCUC	chr14:23596186-23596449(-)$1	263	74	91	20.8809
uuccccccucuucucuc	chr19:56671727-56672010(+)$1	283	124	141	23.1428
UGCUUCUCUCCCUUCUC	chr17:47132697-47132938(+)$1	241	49	66	17.9047
ccccacccuccucacuc	chr1:227179468-227179769(-)$1	301	15	32	25.1666
ucccucccuccuuucuc	chr16:69733920-69734152(+)$1	232	160	177	32.6666

#otherMatches

#Struct PSSM
:::::::::::::::::	chrX:133930442-133930682(-)$1	240	112	129	29.0952
DDDD:::HHHHHHHH::	chr1:27633631-27633878(+)$1	247	106	123	19.9285
yyyyyyyyyyyyybb>>	chr17:8063730-8064002(-)$1	272	225	242	22.1904
:::::::::::::::::	chr20:251441-251710(-)$1	269	69	86	29.6904
:::::::::::::::::	chr1:27633695-27633942(+)$1	247	42	59	19.9285
4dddd22a]ccca]ccc	chr4:726033-726340(+)$1	307	62	79	24.2142
^^^^^^^^^^^^^^^^^	chr17:7154844-7155064(-)$1	220	72	89	24.2142
:::::::::::::::::	chr16:69733952-69734244(+)$1	292	128	145	32.6666
:::::::::::::::::	chr2:97541666-97541893(-)$1	227	198	215	26.2380
::::::::::::::::b	chrX:56592276-56592517(+)$1	241	111	128	26.1190
:::::CCCKKDDDDKKE	chr19:10579574-10579847(+)$1	273	1	18	21.4761
FMMMMCCC:::::::::	chr9:132900673-132901068(+)$1	395	9	26	30.4047
eee!!bb[ccc[a!!aa	chr19:8468334-8468593(+)$1	259	172	189	22.7857
::::::dddd&&&&&&&	chr2:97541587-97541818(-)$1	231	123	140	26.2380
c::::::::::::::::	chr20:33298267-33298551(+)$1	284	91	108	23.5000
:::::::::::::::::	chrX:56592343-56592608(+)$1	265	44	61	26.1190
g22ccc:::::::::::	chr17:80708604-80708866(+)$1	262	31	48	18.8571
:::::::::::::::::	chrX:56592317-56592543(+)$1	226	70	87	26.1190
>>>>>>>>>>>>>>ggg	chr19:17452804-17453112(+)$1	308	62	79	17.5476
:::::::::::::::::	chrX:133930415-133930642(-)$1	227	72	89	29.0952
BBKKDDDDGGGGGGGee	chr10:121355842-121356127(-)$1	285	110	127	19.0952
:::::::::::::::::	chr20:251510-251775(-)$1	265	134	151	29.6904
::::::::::::::a[d	chr13:42894552-42894816(+)$1	264	94	111	16.9523
:::::EEEEENNNNNHH	chrX:122735101-122735364(-)$1	263	31	48	25.0476
:::::::::::::::::	chr7:116608303-116608597(+)$1	294	36	53	28.3809
:::::::::::::::::	chr12:53846023-53846230(+)$1	207	2	19	18.8571
!!dddd"""ccc####c	chr16:87733879-87734235(-)$1	356	109	126	27.7857
:::::::::::::::::	chr1:155260134-155260353(-)$1	219	33	50	21.3571
BKKHHHHHHHH:ccc""	chr11:66044229-66044466(+)$1	237	14	31	20.6428
:::::CCC{CCCCCC{C	chr11:61664897-61665240(-)$1	343	93	110	20.2857
qqqqqqqqcccCCC}II	chr19:6494493-6494816(-)$1	323	214	231	19.5714
:::::::::::::::::	chr22:35690691-35690988(+)$1	297	88	105	20.1666
:::::::::::::::::	chrX:122735192-122735424(-)$1	232	91	108	25.0476
:::::::::::::::::	chr5:112929774-112930106(+)$1	332	134	151	27.6666
22ggggggg:::FFFFF	chr8:42878812-42879057(+)$1	245	82	99	19.2142
EEEEE::::::::::::	chr11:66010846-66011124(+)$1	278	61	78	21.9523
:::::::::::::::::	chrX:133930316-133930576(-)$1	260	6	23	29.0952
ssccc:EEEEECCC}FF	chr14:23596186-23596449(-)$1	263	74	91	20.8809
HWWWWWWWWWWWWWWWW	chr19:56671727-56672010(+)$1	283	124	141	23.1428
[ccc^^^^^^^^^^^^^	chr17:47132697-47132938(+)$1	241	49	66	17.9047
:::::::::::::::::	chr1:227179468-227179769(-)$1	301	15	32	25.1666
:::::::::::::::::	chr16:69733920-69734152(+)$1	232	160	177	32.6666

#DB
.................	chrX:133930442-133930682(-)$1	1	112	129	29.0952
))))...((((((((..	chr1:27633631-27633878(+)$1	1	106	123	19.9285
.............))..	chr17:8063730-8064002(-)$1	1	225	242	22.1904
.................	chr20:251441-251710(-)$1	1	69	86	29.6904
.................	chr1:27633695-27633942(+)$1	1	42	59	19.9285
.))))..).)))).)))	chr4:726033-726340(+)$1	1	62	79	24.2142
.................	chr17:7154844-7155064(-)$1	1	72	89	24.2142
.................	chr16:69733952-69734244(+)$1	1	128	145	32.6666
.................	chr2:97541666-97541893(-)$1	1	198	215	26.2380
................(	chrX:56592276-56592517(+)$1	1	111	128	26.1190
.....(((..((((..(	chr19:10579574-10579847(+)$1	1	1	18	21.4761
(....(((.........	chr9:132900673-132901068(+)$1	1	9	26	30.4047
(((..((.(((.(..((	chr19:8468334-8468593(+)$1	1	172	189	22.7857
......((((.......	chr2:97541587-97541818(-)$1	1	123	140	26.2380
)................	chr20:33298267-33298551(+)$1	1	91	108	23.5000
.................	chrX:56592343-56592608(+)$1	1	44	61	26.1190
)..)))...........	chr17:80708604-80708866(+)$1	1	31	48	18.8571
.................	chrX:56592317-56592543(+)$1	1	70	87	26.1190
..............)))	chr19:17452804-17453112(+)$1	1	62	79	17.5476
.................	chrX:133930415-133930642(-)$1	1	72	89	29.0952
((..(((((((((((((	chr10:121355842-121356127(-)$1	1	110	127	19.0952
.................	chr20:251510-251775(-)$1	1	134	151	29.6904
..............(.(	chr13:42894552-42894816(+)$1	1	94	111	16.9523
.....(((((.....((	chrX:122735101-122735364(-)$1	1	31	48	25.0476
.................	chr7:116608303-116608597(+)$1	1	36	53	28.3809
.................	chr12:53846023-53846230(+)$1	1	2	19	18.8571
..((((...(((....(	chr16:87733879-87734235(-)$1	1	109	126	27.7857
.................	chr1:155260134-155260353(-)$1	1	33	50	21.3571
(..((((((((.(((..	chr11:66044229-66044466(+)$1	1	14	31	20.6428
.....(((.((((((.(	chr11:61664897-61665240(-)$1	1	93	110	20.2857
........)))))).))	chr19:6494493-6494816(-)$1	1	214	231	19.5714
.................	chr22:35690691-35690988(+)$1	1	88	105	20.1666
.................	chrX:122735192-122735424(-)$1	1	91	108	25.0476
.................	chr5:112929774-112930106(+)$1	1	134	151	27.6666
..)))))))...(((((	chr8:42878812-42879057(+)$1	1	82	99	19.2142
(((((............	chr11:66010846-66011124(+)$1	1	61	78	21.9523
.................	chrX:133930316-133930576(-)$1	1	6	23	29.0952
..))).)))))))).))	chr14:23596186-23596449(-)$1	1	74	91	20.8809
(................	chr19:56671727-56672010(+)$1	1	124	141	23.1428
.(((.............	chr17:47132697-47132938(+)$1	1	49	66	17.9047
.................	chr1:227179468-227179769(-)$1	1	15	32	25.1666
.................	chr16:69733920-69734152(+)$1	1	160	177	32.6666

#PSSM
u : 0.42	U : 0.19	C : 0.16	c : 0.09	G : 0.07	g : 0.02	a : 0.02	
c : 0.52	C : 0.35	u : 0.09	G : 0.02	
c : 0.61	C : 0.33	U : 0.02	A : 0.02	
c : 0.54	C : 0.33	u : 0.07	U : 0.04	
u : 0.45	U : 0.30	c : 0.09	A : 0.04	a : 0.04	G : 0.02	g : 0.02	
c : 0.45	C : 0.28	u : 0.16	G : 0.04	U : 0.02	g : 0.02	
c : 0.64	C : 0.30	G : 0.02	U : 0.02	
c : 0.61	C : 0.28	U : 0.04	A : 0.02	u : 0.02	
u : 0.57	U : 0.38	c : 0.04	
c : 0.52	C : 0.35	u : 0.04	a : 0.02	G : 0.02	A : 0.02	
c : 0.45	C : 0.30	u : 0.14	U : 0.09	
u : 0.40	U : 0.28	c : 0.19	C : 0.09	G : 0.02	
u : 0.26	c : 0.26	C : 0.16	A : 0.09	U : 0.09	g : 0.07	G : 0.04	
u : 0.38	U : 0.21	c : 0.19	C : 0.14	A : 0.02	G : 0.02	a : 0.02	
c : 0.50	C : 0.35	u : 0.09	G : 0.02	U : 0.02	
u : 0.50	U : 0.26	C : 0.14	c : 0.09	
c : 0.45	C : 0.33	u : 0.14	U : 0.04	G : 0.02	

#score	1007.0000000000009
#seq	42
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_UTR_m2_run2.nuc.txt

#NT
GGGCUCAGUGCUGGCGCGUGAggcggaggcgggcggcggcggcggcgccugcgcggucggacucggucgacgguucgcaggggaggaggcggcgggaggcggaggaggcggcggcggcgauggaggugaagcggcugaaagugaccgagcugcggucggagcugcagcggcggGGCCUGGACUCGCGCGGCCUCAAGGUGGAUCUGGCGCAGCGGCUGCAGGAGGCGCUGGACGCCGAGAUGCUCGAGGACGAggccggcggcggcggggccgggcccggcggggc	chr11:62494450-62494779(-)$1	329	32	318	463.0000

#otherMatches

#Struct PSSM
rrrrrrrrreeeeeEEEEE{DDDDCCCMMMMFFFFFFeeeee[cccccc"""ddddnnnnndddd22ccc]ccc]eeeee:hhhhhhhh[a####bbmmmmbb88888888a]hhhhhhhh:bbnnnnnbbFFFFFFZZZCCC}DDDDEEEEEbb[dddd[ccc!!dddd[ccc!!ccc"""bb[dddd[ffffff####dddd[ggggggg[bbssssssssssbb]ggggggg]dddd55555ffffff22ddddbb4444ccc22cccdddd22cccddddbb	chr20:32399042-32399335(+)$1	293	5	291	463.0000
[cccnnnnnccc]eeeee]a]accc]a]ccc]dddd]eeeee]a:EEEEEBBbb[ccc"""ccc[ccc!!a[bb[cccsssssssssscccbb]a22ccc]ccc22ccc]bbccc[bbuuuuuuuuuuuubb]ccc::::::::ccc[hhhhhhhhmmmmhhhhhhhh22ccceeeee[a[adddd[ggggggg"""a[a[ddddddddeeeee[bbnnnnnbb]eeeee22dddd]dddd]a]a666666gggggggdddd]a]a]eeeeeffffffmmmmffff	chr11:62494450-62494779(-)$1	329	32	318	463.0000

#DB
.........)))))(((((.(((((((....(((((((((((.((((((...((((.....))))..))).))).))))).((((((((.(....((....))........).)))))))).((.....))))))))...))).)))))))))((.((((.(((..((((.(((..(((...((.((((.((((((....((((.(((((((.((..........)).))))))).)))).....))))))..))))))....)))..)))))))..)))))))))	chr20:32399042-32399335(+)$1	1	5	291	463.0000
.(((.....))).))))).).)))).).))).)))).))))).).(((((((((.(((...(((.(((..(.((.(((..........))))).)..))).)))..))).))(((.((............)).)))........(((.((((((((....))))))))..)))(((((.(.(((((.(((((((...(.(.(((((((((((((.((.....)).)))))..)))).)))).).)......))))))))))).).).)))))((((((....))))	chr11:62494450-62494779(-)$1	1	32	318	463.0000

#PSSM
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
c : 1.00	
g : 1.00	
g : 1.00	
g : 0.50	c : 0.50	
c : 0.50	g : 0.50	
c : 0.50	g : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
u : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
g : 1.00	
g : 0.50	c : 0.50	
g : 1.00	
c : 1.00	
c : 0.50	g : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	c : 0.50	
g : 1.00	
g : 1.00	
g : 0.50	a : 0.50	
a : 0.50	c : 0.50	
g : 0.50	u : 0.50	
g : 0.50	c : 0.50	
u : 0.50	g : 0.50	
g : 1.00	
g : 0.50	u : 0.50	
c : 1.00	
g : 1.00	
c : 0.50	a : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
c : 0.50	u : 0.50	
g : 0.50	u : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
c : 1.00	
c : 0.50	a : 0.50	
c : 0.50	g : 0.50	
a : 0.50	g : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
u : 0.50	a : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
g : 0.50	a : 0.50	
g : 1.00	
g : 1.00	
g : 0.50	c : 0.50	
c : 0.50	g : 0.50	
g : 1.00	
g : 0.50	c : 0.50	
a : 0.50	g : 0.50	
g : 1.00	
g : 1.00	
c : 0.50	a : 0.50	
g : 1.00	
g : 1.00	
a : 0.50	c : 0.50	
g : 1.00	
g : 1.00	
c : 0.50	a : 0.50	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 0.50	c : 0.50	
g : 1.00	
a : 0.50	g : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
c : 1.00	
u : 0.50	g : 0.50	
g : 1.00	
c : 1.00	
g : 1.00	
g : 0.50	a : 0.50	
c : 0.50	u : 0.50	
g : 1.00	
g : 1.00	
c : 0.50	a : 0.50	
a : 0.50	g : 0.50	
g : 1.00	
g : 0.50	u : 0.50	
g : 1.00	
a : 1.00	
g : 0.50	a : 0.50	
c : 0.50	g : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
g : 1.00	
a : 1.00	
c : 0.50	a : 0.50	
u : 0.50	a : 0.50	
g : 1.00	
g : 0.50	u : 0.50	
g : 1.00	
a : 1.00	
g : 0.50	c : 0.50	
c : 1.00	
g : 1.00	
g : 0.50	a : 0.50	
g : 1.00	
c : 1.00	
g : 0.50	u : 0.50	
c : 0.50	g : 0.50	
c : 1.00	
g : 1.00	
g : 1.00	
a : 0.50	u : 0.50	
g : 0.50	c : 0.50	
c : 0.50	g : 0.50	
c : 0.50	g : 0.50	
g : 0.50	a : 0.50	
a : 0.50	g : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
c : 0.50	g : 0.50	
g : 0.50	c : 0.50	
a : 1.00	
g : 1.00	
c : 1.00	
c : 0.50	g : 0.50	
g : 1.00	
a : 0.50	c : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	U : 0.50	
a : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
A : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	

#score	926.0
#seq	2
#width	286
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_transcript_m2_run2.nuc.txt

#NT
UCCA	chr12:53854748-53854957(+)$1	209	43	47	11.9999
UCCA	chr2:21228677-21228922(-)$1	245	11	15	11.9999
UCCA	chr4:187510036-187510315(-)$1	279	50	54	11.9999
UCCA	chr19:13054893-13055176(+)$1	283	138	142	11.9999
UCCA	chr5:172378342-172378626(+)$1	284	234	238	11.9999
UCCA	chr2:188329706-188329997(-)$1	291	108	112	11.9999
UCCA	chr2:136481516-136481878(+)$1	362	196	200	11.9999
UCCA	chr11:61553434-61553676(+)$1	242	91	95	11.9999
UCCA	chr1:43392062-43392307(-)$1	245	96	100	11.9999
UCCA	chr7:139305069-139305330(-)$1	261	35	39	11.9999
UCCA	chr3:12942050-12942299(-)$1	249	123	127	11.9999
UCCA	chr4:74283877-74284114(+)$1	237	96	100	11.9999
UCCA	chr12:8073733-8074033(-)$1	300	37	41	11.9999
UCCA	chr6:34213233-34213482(+)$1	249	180	184	11.9999
UCCA	chr2:219114437-219114734(+)$1	297	288	292	11.9999
UCCA	chr2:65539230-65539479(-)$1	249	71	75	11.9999
UCCA	chr2:21227044-21227255(-)$1	211	19	23	11.9999
UCCA	chr1:153964440-153964652(+)$1	212	95	99	11.9999
UCCA	chr5:179157698-179157933(+)$1	235	100	104	11.9999
UCCA	chrM:11641-11914(+)$1	273	26	30	11.9999
ucca	chr19:13209207-13209491(+)$1	284	154	158	11.9999
UCCA	chr6:24706294-24706565(-)$1	271	70	74	11.9999
UCCA	chr16:2816836-2817105(+)$1	269	7	11	11.9999
UCCA	chr2:128948101-128948401(+)$1	300	61	65	11.9999
UCCA	chr10:102122903-102123145(+)$1	242	195	199	11.9999
UCCA	chr1:93617634-93617921(-)$1	287	122	126	11.9999
UCCA	chr7:6505621-6505875(-)$1	254	126	130	11.9999
UCCA	chr2:96918150-96918416(-)$1	266	104	108	11.9999
UCCA	chr8:22279600-22279837(+)$1	237	103	107	11.9999
UCCA	chrX:20170562-20170819(-)$1	257	76	80	11.9999
UCCA	chrM:4611-4850(+)$1	239	12	16	11.9999
UCCA	chr2:21228757-21229006(-)$1	249	42	46	11.9999
UCCA	chr12:9231816-9232021(-)$1	205	37	41	11.9999
UCCA	chr6:41567132-41567350(+)$1	218	33	37	11.9999
UCCA	chr16:69727678-69727958(+)$1	280	94	98	11.9999
UCCA	chr21:46270896-46271149(-)$1	253	18	22	11.9999
UCCA	chr15:99500874-99501112(+)$1	238	168	172	11.9999
ucca	chr11:61734727-61734950(-)$1	223	1	5	11.9999
UCCA	chr7:103197339-103197587(-)$1	248	19	23	11.9999
UCCA	chr2:159481481-159481793(+)$1	312	91	95	11.9999
UCCA	chr7:94295632-94295887(+)$1	255	180	184	11.9999
UCCA	chr7:6063896-6064148(-)$1	252	215	219	11.9999
UCCA	chr14:94845769-94845998(-)$1	229	78	82	11.9999
UCCA	chr8:38961053-38961316(+)$1	263	78	82	11.9999
UCCA	chr5:72798679-72798972(+)$1	293	92	96	11.9999
UCCA	chr17:70120105-70120351(+)$1	246	234	238	11.9999
UCCA	chr12:53854800-53855028(+)$1	228	14	18	11.9999
UCCA	chr2:21224412-21224618(-)$1	206	50	54	11.9999
UCCA	chr2:21227077-21227349(-)$1	272	78	82	11.9999
UCCA	chr2:21227040-21227244(-)$1	204	8	12	11.9999
UCCA	chr8:99054771-99055015(-)$1	244	56	60	11.9999
UCCA	chr16:57418005-57418252(+)$1	247	6	10	11.9999
UCCA	chr2:188331234-188331495(-)$1	261	135	139	11.9999
UCCA	chr19:3976081-3976309(-)$1	228	36	40	11.9999
UCCA	chr2:21229011-21229256(-)$1	245	83	87	11.9999
UCCA	chr2:216256354-216256579(-)$1	225	82	86	11.9999
UCCA	chr12:69746954-69747177(+)$1	223	46	50	11.9999
ucca	chrX:20170917-20171171(-)$1	254	22	26	11.9999
UCCA	chr11:6635023-6635267(-)$1	244	61	65	11.9999
ucca	chr12:53858501-53858735(+)$1	234	35	39	11.9999
ucca	chr16:52473142-52473392(-)$1	250	14	18	11.9999
UCCA	chr3:30734345-30734582(+)$1	237	22	26	11.9999
UCCA	chr4:79463036-79463307(+)$1	271	26	30	11.9999
UCCA	chr15:99502258-99502504(+)$1	246	99	103	11.9999
UCCA	chr12:53848414-53848644(+)$1	230	144	148	11.9999
UCCA	chr2:21226082-21226306(-)$1	224	105	109	11.9999
UCCA	chr11:122929409-122929637(-)$1	228	65	69	11.9999
UCCA	chr19:15350696-15350933(-)$1	237	8	12	11.9999
UCCA	chr1:228285654-228285929(+)$1	275	33	37	11.9999
UCCA	chr17:28795312-28795626(+)$1	314	111	115	11.9999
UCCA	chr20:307484-307768(+)$1	284	175	179	11.9999
UCCA	chr1:236139482-236139721(-)$1	239	29	33	11.9999
UCCA	chr14:23236452-23236703(+)$1	251	5	9	11.9999
UCCA	chr3:31678196-31678469(+)$1	273	219	223	11.9999
UCCA	chr12:9223028-9223255(-)$1	227	103	107	11.9999
UCCA	chr6:52362850-52363092(-)$1	242	64	68	11.9999
UCCA	chrX:118604985-118605235(+)$1	250	203	207	11.9999
UCCA	chr2:220085389-220085688(-)$1	299	69	73	11.9999
UCCA	chr19:972432-972687(+)$1	255	136	140	11.9999

#otherMatches

#Struct PSSM
::::	chr20:30253497-30253827(-)$1	330	90	94	11.9999
eemm	chr12:53854748-53854957(+)$1	209	43	47	11.9999
::::	chr2:21228677-21228922(-)$1	245	11	15	11.9999
::::	chr4:187510036-187510315(-)$1	279	50	54	11.9999
qqqq	chr19:13054893-13055176(+)$1	283	138	142	11.9999
::cc	chr5:172378342-172378626(+)$1	284	234	238	11.9999
::::	chr2:188329706-188329997(-)$1	291	108	112	11.9999
::::	chr2:136481516-136481878(+)$1	362	196	200	11.9999
pppp	chr11:61553434-61553676(+)$1	242	91	95	11.9999
g:::	chr1:43392062-43392307(-)$1	245	96	100	11.9999
33dd	chr7:139305069-139305330(-)$1	261	35	39	11.9999
:::d	chr3:12942050-12942299(-)$1	249	123	127	11.9999
::::	chr4:74283877-74284114(+)$1	237	96	100	11.9999
GGG:	chr12:8073733-8074033(-)$1	300	37	41	11.9999
gggg	chr6:34213233-34213482(+)$1	249	180	184	11.9999
::::	chr2:219114437-219114734(+)$1	297	288	292	11.9999
^^^^	chr2:65539230-65539479(-)$1	249	71	75	11.9999
e[bb	chr2:21227044-21227255(-)$1	211	19	23	11.9999
hhhd	chr1:153964440-153964652(+)$1	212	95	99	11.9999
c]ee	chr5:179157698-179157933(+)$1	235	100	104	11.9999
xxxx	chrM:11641-11914(+)$1	273	26	30	11.9999
::::	chr19:13209207-13209491(+)$1	284	154	158	11.9999
::::	chr6:24706294-24706565(-)$1	271	70	74	11.9999
b!!f	chr16:2816836-2817105(+)$1	269	7	11	11.9999
FFFF	chr2:128948101-128948401(+)$1	300	61	65	11.9999
ff:G	chr10:102122903-102123145(+)$1	242	195	199	11.9999
::::	chr1:93617634-93617921(-)$1	287	122	126	11.9999
ddcc	chr7:6505621-6505875(-)$1	254	126	130	11.9999
22ff	chr2:96918150-96918416(-)$1	266	104	108	11.9999
ggg"	chr8:22279600-22279837(+)$1	237	103	107	11.9999
iiii	chrX:20170562-20170819(-)$1	257	76	80	11.9999
NNNN	chrM:4611-4850(+)$1	239	12	16	11.9999
dddd	chr2:21228757-21229006(-)$1	249	42	46	11.9999
0000	chr12:9231816-9232021(-)$1	205	37	41	11.9999
c]cc	chr6:41567132-41567350(+)$1	218	33	37	11.9999
tttt	chr16:69727678-69727958(+)$1	280	94	98	11.9999
cooo	chr21:46270896-46271149(-)$1	253	18	22	11.9999
((((	chr15:99500874-99501112(+)$1	238	168	172	11.9999
::::	chr11:61734727-61734950(-)$1	223	1	5	11.9999
gggg	chr7:103197339-103197587(-)$1	248	19	23	11.9999
::::	chr2:159481481-159481793(+)$1	312	91	95	11.9999
6666	chr7:94295632-94295887(+)$1	255	180	184	11.9999
""ee	chr7:6063896-6064148(-)$1	252	215	219	11.9999
dddd	chr14:94845769-94845998(-)$1	229	78	82	11.9999
c]a:	chr8:38961053-38961316(+)$1	263	78	82	11.9999
"""f	chr5:72798679-72798972(+)$1	293	92	96	11.9999
c22c	chr17:70120105-70120351(+)$1	246	234	238	11.9999
$$$$	chr12:53854800-53855028(+)$1	228	14	18	11.9999
g:::	chr2:21224412-21224618(-)$1	206	50	54	11.9999
]ccc	chr2:21227077-21227349(-)$1	272	78	82	11.9999
GGGG	chr2:21227040-21227244(-)$1	204	8	12	11.9999
nnnn	chr8:99054771-99055015(-)$1	244	56	60	11.9999
!!ff	chr16:57418005-57418252(+)$1	247	6	10	11.9999
d22h	chr2:188331234-188331495(-)$1	261	135	139	11.9999
eeet	chr19:3976081-3976309(-)$1	228	36	40	11.9999
eee2	chr2:21229011-21229256(-)$1	245	83	87	11.9999
d:::	chr2:216256354-216256579(-)$1	225	82	86	11.9999
ffff	chr12:69746954-69747177(+)$1	223	46	50	11.9999
::::	chrX:20170917-20171171(-)$1	254	22	26	11.9999
::::	chr11:6635023-6635267(-)$1	244	61	65	11.9999
::dd	chr12:53858501-53858735(+)$1	234	35	39	11.9999
pppp	chr16:52473142-52473392(-)$1	250	14	18	11.9999
ffff	chr3:30734345-30734582(+)$1	237	22	26	11.9999
d!!d	chr4:79463036-79463307(+)$1	271	26	30	11.9999
mmdd	chr15:99502258-99502504(+)$1	246	99	103	11.9999
eeee	chr12:53848414-53848644(+)$1	230	144	148	11.9999
!!ee	chr2:21226082-21226306(-)$1	224	105	109	11.9999
ddd2	chr11:122929409-122929637(-)$1	228	65	69	11.9999
::DD	chr19:15350696-15350933(-)$1	237	8	12	11.9999
oooo	chr1:228285654-228285929(+)$1	275	33	37	11.9999
gggg	chr17:28795312-28795626(+)$1	314	111	115	11.9999
eeee	chr20:307484-307768(+)$1	284	175	179	11.9999
::::	chr1:236139482-236139721(-)$1	239	29	33	11.9999
dd""	chr14:23236452-23236703(+)$1	251	5	9	11.9999
lbb3	chr3:31678196-31678469(+)$1	273	219	223	11.9999
qqqq	chr12:9223028-9223255(-)$1	227	103	107	11.9999
))))	chr6:52362850-52363092(-)$1	242	64	68	11.9999
ffff	chrX:118604985-118605235(+)$1	250	203	207	11.9999
DDD:	chr2:220085389-220085688(-)$1	299	69	73	11.9999
RRRR	chr19:972432-972687(+)$1	255	136	140	11.9999

#DB
....	chr20:30253497-30253827(-)$1	1	90	94	11.9999
((..	chr12:53854748-53854957(+)$1	1	43	47	11.9999
....	chr2:21228677-21228922(-)$1	1	11	15	11.9999
....	chr4:187510036-187510315(-)$1	1	50	54	11.9999
....	chr19:13054893-13055176(+)$1	1	138	142	11.9999
..((	chr5:172378342-172378626(+)$1	1	234	238	11.9999
....	chr2:188329706-188329997(-)$1	1	108	112	11.9999
....	chr2:136481516-136481878(+)$1	1	196	200	11.9999
....	chr11:61553434-61553676(+)$1	1	91	95	11.9999
)...	chr1:43392062-43392307(-)$1	1	96	100	11.9999
..))	chr7:139305069-139305330(-)$1	1	35	39	11.9999
...(	chr3:12942050-12942299(-)$1	1	123	127	11.9999
....	chr4:74283877-74284114(+)$1	1	96	100	11.9999
(((.	chr12:8073733-8074033(-)$1	1	37	41	11.9999
))))	chr6:34213233-34213482(+)$1	1	180	184	11.9999
....	chr2:219114437-219114734(+)$1	1	288	292	11.9999
....	chr2:65539230-65539479(-)$1	1	71	75	11.9999
(.((	chr2:21227044-21227255(-)$1	1	19	23	11.9999
((((	chr1:153964440-153964652(+)$1	1	95	99	11.9999
).))	chr5:179157698-179157933(+)$1	1	100	104	11.9999
....	chrM:11641-11914(+)$1	1	26	30	11.9999
....	chr19:13209207-13209491(+)$1	1	154	158	11.9999
....	chr6:24706294-24706565(-)$1	1	70	74	11.9999
(..(	chr16:2816836-2817105(+)$1	1	7	11	11.9999
((((	chr2:128948101-128948401(+)$1	1	61	65	11.9999
)).)	chr10:102122903-102123145(+)$1	1	195	199	11.9999
....	chr1:93617634-93617921(-)$1	1	122	126	11.9999
((((	chr7:6505621-6505875(-)$1	1	126	130	11.9999
..))	chr2:96918150-96918416(-)$1	1	104	108	11.9999
(((.	chr8:22279600-22279837(+)$1	1	103	107	11.9999
))))	chrX:20170562-20170819(-)$1	1	76	80	11.9999
....	chrM:4611-4850(+)$1	1	12	16	11.9999
))))	chr2:21228757-21229006(-)$1	1	42	46	11.9999
....	chr12:9231816-9232021(-)$1	1	37	41	11.9999
).))	chr6:41567132-41567350(+)$1	1	33	37	11.9999
....	chr16:69727678-69727958(+)$1	1	94	98	11.9999
(...	chr21:46270896-46271149(-)$1	1	18	22	11.9999
....	chr15:99500874-99501112(+)$1	1	168	172	11.9999
....	chr11:61734727-61734950(-)$1	1	1	5	11.9999
((((	chr7:103197339-103197587(-)$1	1	19	23	11.9999
....	chr2:159481481-159481793(+)$1	1	91	95	11.9999
....	chr7:94295632-94295887(+)$1	1	180	184	11.9999
..((	chr7:6063896-6064148(-)$1	1	215	219	11.9999
((((	chr14:94845769-94845998(-)$1	1	78	82	11.9999
).).	chr8:38961053-38961316(+)$1	1	78	82	11.9999
...(	chr5:72798679-72798972(+)$1	1	92	96	11.9999
)..)	chr17:70120105-70120351(+)$1	1	234	238	11.9999
....	chr12:53854800-53855028(+)$1	1	14	18	11.9999
)...	chr2:21224412-21224618(-)$1	1	50	54	11.9999
.)))	chr2:21227077-21227349(-)$1	1	78	82	11.9999
((((	chr2:21227040-21227244(-)$1	1	8	12	11.9999
....	chr8:99054771-99055015(-)$1	1	56	60	11.9999
..((	chr16:57418005-57418252(+)$1	1	6	10	11.9999
)..)	chr2:188331234-188331495(-)$1	1	135	139	11.9999
(((.	chr19:3976081-3976309(-)$1	1	36	40	11.9999
))).	chr2:21229011-21229256(-)$1	1	83	87	11.9999
)...	chr2:216256354-216256579(-)$1	1	82	86	11.9999
))))	chr12:69746954-69747177(+)$1	1	46	50	11.9999
....	chrX:20170917-20171171(-)$1	1	22	26	11.9999
....	chr11:6635023-6635267(-)$1	1	61	65	11.9999
..((	chr12:53858501-53858735(+)$1	1	35	39	11.9999
....	chr16:52473142-52473392(-)$1	1	14	18	11.9999
((((	chr3:30734345-30734582(+)$1	1	22	26	11.9999
(..(	chr4:79463036-79463307(+)$1	1	26	30	11.9999
..))	chr15:99502258-99502504(+)$1	1	99	103	11.9999
((((	chr12:53848414-53848644(+)$1	1	144	148	11.9999
..((	chr2:21226082-21226306(-)$1	1	105	109	11.9999
))).	chr11:122929409-122929637(-)$1	1	65	69	11.9999
..((	chr19:15350696-15350933(-)$1	1	8	12	11.9999
....	chr1:228285654-228285929(+)$1	1	33	37	11.9999
))))	chr17:28795312-28795626(+)$1	1	111	115	11.9999
))))	chr20:307484-307768(+)$1	1	175	179	11.9999
....	chr1:236139482-236139721(-)$1	1	29	33	11.9999
((..	chr14:23236452-23236703(+)$1	1	5	9	11.9999
.)).	chr3:31678196-31678469(+)$1	1	219	223	11.9999
....	chr12:9223028-9223255(-)$1	1	103	107	11.9999
....	chr6:52362850-52363092(-)$1	1	64	68	11.9999
((((	chrX:118604985-118605235(+)$1	1	203	207	11.9999
(((.	chr2:220085389-220085688(-)$1	1	69	73	11.9999
....	chr19:972432-972687(+)$1	1	136	140	11.9999

#PSSM
U : 0.93	u : 0.06	
C : 0.93	c : 0.06	
C : 0.93	c : 0.06	
A : 0.93	a : 0.06	

#score	959.9999999999995
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_CDS_m2_run1.nuc.txt

#NT
AAGGUGA	chr7:148702218-148702471(-)$1	253	236	243	14.8297
AAGGAAA	chr3:160134046-160134300(+)$1	254	70	77	14.1914
AAGGAGA	chr1:214815838-214816099(+)$1	261	226	233	17.4893
AAGGAGG	chr3:47161680-47161972(-)$1	292	64	71	13.3404
AAGGAGA	chr1:214819808-214820064(+)$1	256	192	199	17.4893
AAGGAAA	chr1:39799371-39799627(+)$1	256	71	78	14.1914
AAGGAAA	chr7:72891847-72892162(-)$1	315	46	53	14.1914
AAGGAAA	chr15:40913964-40914222(+)$1	258	127	134	14.1914
AAGGAAA	chr3:37365549-37365808(+)$1	259	123	130	14.1914
AAGAAGA	chr3:37368134-37368410(+)$1	276	52	59	13.8723
AAGGAGA	chr11:62294486-62294761(-)$1	275	74	81	17.4893
AAGGUGA	chr11:62292063-62292331(-)$1	268	176	183	14.8297
AAGGUGA	chr3:47951870-47952128(-)$1	258	175	182	14.8297
AAGGAGA	chr11:62285839-62286158(-)$1	319	57	64	17.4893
AAGAAGA	chr9:100700249-100700509(-)$1	260	149	156	13.8723
AAGGUGA	chr11:62292795-62293047(-)$1	252	84	91	14.8297
AAGGAGA	chr3:37366209-37366475(+)$1	266	57	64	17.4893
AAGGGGA	chr1:39800999-39801251(+)$1	252	76	83	14.1914
AAGGGGA	chr1:203766812-203767065(+)$1	253	48	55	14.1914
AAGUAGA	chr12:104333214-104333477(+)$1	263	142	149	13.6595
AAGGGGA	chr3:37365721-37366022(+)$1	301	24	31	14.1914
AAGAAGA	chr2:152320603-152320891(+)$1	288	109	116	13.8723
AAGGAGG	chr11:62284728-62285015(-)$1	287	0	7	13.3404
AAGGAGA	chr11:62296875-62297097(-)$1	222	22	29	17.4893
AAGGAGG	chr2:232325097-232325355(-)$1	258	18	25	13.3404
AAGGAGA	chr11:62291322-62291604(-)$1	282	4	11	17.4893
AAGGUGA	chr11:62300165-62300411(-)$1	246	99	106	14.8297
AAGUAGA	chr11:5424207-5424473(-)$1	266	22	29	13.6595
AAGGUGA	chr11:62290721-62290952(-)$1	231	153	160	14.8297
AAGGAAA	chr3:37365626-37365911(+)$1	285	46	53	14.1914
AAGGAGA	chr11:62288128-62288380(-)$1	252	92	99	17.4893
AAGGAGG	chr11:62285119-62285382(-)$1	263	193	200	13.3404
AAGGUGA	chr11:62293957-62294202(-)$1	245	87	94	14.8297
AAGGAAA	chr1:214813586-214813835(+)$1	249	3	10	14.1914
AAGUAGA	chr21:39471289-39471542(-)$1	253	65	72	13.6595
AAGGAGA	chr11:62293173-62293427(-)$1	254	87	94	17.4893
AAGGAGA	chr18:9256705-9256989(+)$1	284	13	20	17.4893
AAGGAGA	chr11:62292333-62292590(-)$1	257	192	199	17.4893
AAGGAGA	chr11:62300333-62300597(-)$1	264	252	259	17.4893
AAGGCGA	chr11:62286369-62286605(-)$1	236	125	132	13.9787
AAGGUGA	chr2:55253544-55253784(-)$1	240	158	165	14.8297
AAGAAGA	chr3:37367418-37367694(+)$1	276	34	41	13.8723
AAGGAAA	chr15:40915379-40915642(+)$1	263	19	26	14.1914
AAGGUGA	chr11:62290527-62290800(-)$1	273	1	8	14.8297
AAGGAGA	chrM:14220-14444(-)$1	224	152	159	17.4893
AAGAAGA	chr3:37366585-37366878(+)$1	293	51	58	13.8723

#otherMatches

#Struct PSSM
""bb[bb	chr12:46320559-46320862(-)$1	303	156	163	17.4893
::A}GGG	chr7:148702218-148702471(-)$1	253	236	243	14.8297
nccc::J	chr3:160134046-160134300(+)$1	254	70	77	14.1914
III~~~~	chr1:214815838-214816099(+)$1	261	226	233	17.4893
ogggggg	chr3:47161680-47161972(-)$1	292	64	71	13.3404
ZCCC}A}	chr1:214819808-214820064(+)$1	256	192	199	17.4893
meeeee:	chr1:39799371-39799627(+)$1	256	71	78	14.1914
:::::::	chr7:72891847-72892162(-)$1	315	46	53	14.1914
oooooob	chr15:40913964-40914222(+)$1	258	127	134	14.1914
oooooff	chr3:37365549-37365808(+)$1	259	123	130	14.1914
+++++++	chr3:37368134-37368410(+)$1	276	52	59	13.8723
5ccc]ee	chr11:62294486-62294761(-)$1	275	74	81	17.4893
tffffff	chr11:62292063-62292331(-)$1	268	176	183	14.8297
meeeee]	chr3:47951870-47952128(-)$1	258	175	182	14.8297
GGGG:::	chr11:62285839-62286158(-)$1	319	57	64	17.4893
dd!!bb"	chr9:100700249-100700509(-)$1	260	149	156	13.8723
'''''''	chr11:62292795-62293047(-)$1	252	84	91	14.8297
ppppppp	chr3:37366209-37366475(+)$1	266	57	64	17.4893
gqqqqqq	chr1:39800999-39801251(+)$1	252	76	83	14.1914
IIIIIII	chr1:203766812-203767065(+)$1	253	48	55	14.1914
:::::::	chr12:104333214-104333477(+)$1	263	142	149	13.6595
::ggggg	chr3:37365721-37366022(+)$1	301	24	31	14.1914
ssccc22	chr2:152320603-152320891(+)$1	288	109	116	13.8723
::BBKKB	chr11:62284728-62285015(-)$1	287	0	7	13.3404
ffffGGG	chr11:62296875-62297097(-)$1	222	22	29	17.4893
##a[fff	chr2:232325097-232325355(-)$1	258	18	25	13.3404
::CCCKK	chr11:62291322-62291604(-)$1	282	4	11	17.4893
"eeeee+	chr11:62300165-62300411(-)$1	246	99	106	14.8297
:::::::	chr11:5424207-5424473(-)$1	266	22	29	13.6595
+++++++	chr11:62290721-62290952(-)$1	231	153	160	14.8297
oooooff	chr3:37365626-37365911(+)$1	285	46	53	14.1914
:CCCDDD	chr11:62288128-62288380(-)$1	252	92	99	17.4893
2iiiiii	chr11:62285119-62285382(-)$1	263	193	200	13.3404
b!!bbnn	chr11:62293957-62294202(-)$1	245	87	94	14.8297
cccnnnn	chr1:214813586-214813835(+)$1	249	3	10	14.1914
ccc[ccc	chr21:39471289-39471542(-)$1	253	65	72	13.6595
33bb333	chr11:62293173-62293427(-)$1	254	87	94	17.4893
::CCCGG	chr18:9256705-9256989(+)$1	284	13	20	17.4893
$ccc"""	chr11:62292333-62292590(-)$1	257	192	199	17.4893
qeeeee:	chr11:62300333-62300597(-)$1	264	252	259	17.4893
fffffEE	chr11:62286369-62286605(-)$1	236	125	132	13.9787
>>>ccc]	chr2:55253544-55253784(-)$1	240	158	165	14.8297
:::FFFF	chr3:37367418-37367694(+)$1	276	34	41	13.8723
eee::::	chr15:40915379-40915642(+)$1	263	19	26	14.1914
:::::::	chr11:62290527-62290800(-)$1	273	1	8	14.8297
dddd:::	chrM:14220-14444(-)$1	224	152	159	17.4893
QQQQFFF	chr3:37366585-37366878(+)$1	293	51	58	13.8723

#DB
..((.((	chr12:46320559-46320862(-)$1	1	156	163	17.4893
..).)))	chr7:148702218-148702471(-)$1	1	236	243	14.8297
.)))..(	chr3:160134046-160134300(+)$1	1	70	77	14.1914
)))....	chr1:214815838-214816099(+)$1	1	226	233	17.4893
.))))))	chr3:47161680-47161972(-)$1	1	64	71	13.3404
.))).).	chr1:214819808-214820064(+)$1	1	192	199	17.4893
.))))).	chr1:39799371-39799627(+)$1	1	71	78	14.1914
.......	chr7:72891847-72892162(-)$1	1	46	53	14.1914
......)	chr15:40913964-40914222(+)$1	1	127	134	14.1914
.....))	chr3:37365549-37365808(+)$1	1	123	130	14.1914
.......	chr3:37368134-37368410(+)$1	1	52	59	13.8723
.))).))	chr11:62294486-62294761(-)$1	1	74	81	17.4893
.))))))	chr11:62292063-62292331(-)$1	1	176	183	14.8297
.))))).	chr3:47951870-47952128(-)$1	1	175	182	14.8297
((((...	chr11:62285839-62286158(-)$1	1	57	64	17.4893
((..((.	chr9:100700249-100700509(-)$1	1	149	156	13.8723
.......	chr11:62292795-62293047(-)$1	1	84	91	14.8297
.......	chr3:37366209-37366475(+)$1	1	57	64	17.4893
(......	chr1:39800999-39801251(+)$1	1	76	83	14.1914
(((((((	chr1:203766812-203767065(+)$1	1	48	55	14.1914
.......	chr12:104333214-104333477(+)$1	1	142	149	13.6595
..(((((	chr3:37365721-37366022(+)$1	1	24	31	14.1914
..)))..	chr2:152320603-152320891(+)$1	1	109	116	13.8723
..((..(	chr11:62284728-62285015(-)$1	1	0	7	13.3404
))))(((	chr11:62296875-62297097(-)$1	1	22	29	17.4893
..(.(((	chr2:232325097-232325355(-)$1	1	18	25	13.3404
..(((..	chr11:62291322-62291604(-)$1	1	4	11	17.4893
.(((((.	chr11:62300165-62300411(-)$1	1	99	106	14.8297
.......	chr11:5424207-5424473(-)$1	1	22	29	13.6595
.......	chr11:62290721-62290952(-)$1	1	153	160	14.8297
.....))	chr3:37365626-37365911(+)$1	1	46	53	14.1914
.((((((	chr11:62288128-62288380(-)$1	1	92	99	17.4893
.))))))	chr11:62285119-62285382(-)$1	1	193	200	13.3404
(..((..	chr11:62293957-62294202(-)$1	1	87	94	14.8297
(((....	chr1:214813586-214813835(+)$1	1	3	10	14.1914
(((.(((	chr21:39471289-39471542(-)$1	1	65	72	13.6595
..))...	chr11:62293173-62293427(-)$1	1	87	94	17.4893
..(((((	chr18:9256705-9256989(+)$1	1	13	20	17.4893
.(((...	chr11:62292333-62292590(-)$1	1	192	199	17.4893
.))))).	chr11:62300333-62300597(-)$1	1	252	259	17.4893
)))))))	chr11:62286369-62286605(-)$1	1	125	132	13.9787
...))).	chr2:55253544-55253784(-)$1	1	158	165	14.8297
...((((	chr3:37367418-37367694(+)$1	1	34	41	13.8723
)))....	chr15:40915379-40915642(+)$1	1	19	26	14.1914
.......	chr11:62290527-62290800(-)$1	1	1	8	14.8297
))))...	chrM:14220-14444(-)$1	1	152	159	17.4893
....(((	chr3:37366585-37366878(+)$1	1	51	58	13.8723

#PSSM
A : 1.00	
A : 1.00	
G : 1.00	
G : 0.82	A : 0.10	U : 0.06	
A : 0.72	U : 0.19	G : 0.06	C : 0.02	
G : 0.82	A : 0.17	
A : 0.91	G : 0.08	

#score	712.1063829787234
#seq	47
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_UTR_m2_run2.nuc.txt

#NT
ccccu	chr4:726039-726331(+)$1	292	42	47	14.9999
ccccu	chr7:100075625-100075945(-)$1	320	0	5	14.9999
CCCCU	chr1:26607590-26607847(+)$1	257	43	48	14.9999
CCCCU	chr19:3465860-3466124(+)$1	264	12	17	14.9999
CCCCU	chr5:176910325-176910595(-)$1	270	157	162	14.9999
CCCCU	chr1:27733085-27733314(-)$1	229	68	73	14.9999
CCCCU	chr7:150929593-150929850(+)$1	257	58	63	14.9999
CCCCU	chr7:150929650-150929907(+)$1	257	1	6	14.9999
CCCCU	chr11:60899189-60899457(-)$1	268	82	87	14.9999
CCCCU	chr16:28846885-28847128(+)$1	243	99	104	14.9999
CCCCU	chr16:30675933-30676184(+)$1	251	90	95	14.9999
CCCCU	chr14:24615879-24616343(-)$1	464	57	62	14.9999
CCCCU	chr5:176963392-176963741(-)$1	349	46	51	14.9999
ccccu	chr3:47459045-47459400(-)$1	355	6	11	14.9999
CCCCU	chr7:150742814-150743180(+)$1	366	155	160	14.9999
CCCCU	chr17:5487376-5487702(-)$1	326	129	134	14.9999
CCCCU	chr19:51323544-51323864(-)$1	320	102	107	14.9999
ccccu	chr6:35260171-35260442(+)$1	271	91	96	14.9999
CCCCU	chr16:69599924-69600183(+)$1	259	26	31	14.9999
CCCCU	chr11:65622351-65622606(-)$1	255	124	129	14.9999
CCCCU	chr1:153923948-153924220(-)$1	272	187	192	14.9999
ccccu	chr17:80708893-80709151(+)$1	258	8	13	14.9999
ccccu	chr19:56173198-56173445(+)$1	247	102	107	14.9999
CCCCU	chr17:30469880-30470166(+)$1	286	27	32	14.9999
ccccu	chr19:8468915-8469234(+)$1	319	80	85	14.9999
ccccu	chr1:1250896-1251182(-)$1	286	61	66	14.9999
CCCCU	chr21:34915621-34915891(+)$1	270	113	118	14.9999
ccccu	chr1:227179480-227179764(-)$1	284	55	60	14.9999
CCCCU	chr7:72416686-72416954(+)$1	268	94	99	14.9999
CCCCU	chr17:34052818-34053140(+)$1	322	158	163	14.9999
CCCCU	chr3:14529762-14530116(+)$1	354	11	16	14.9999
CCCCU	chr17:47788594-47788885(-)$1	291	71	76	14.9999
CCCCU	chr19:49605438-49605744(+)$1	306	80	85	14.9999
CCCCU	chr6:32136700-32137010(-)$1	310	57	62	14.9999
CCCCU	chr16:11966625-11966890(-)$1	265	243	248	14.9999
CCCCU	chr2:74588300-74588621(-)$1	321	6	11	14.9999
ccccu	chr11:45826884-45827246(+)$1	362	6	11	14.9999
CCCCU	chr19:3630611-3630898(-)$1	287	101	106	14.9999
CCCCU	chr12:54763865-54764161(-)$1	296	135	140	14.9999
ccccu	chr10:121355982-121356228(-)$1	246	171	176	14.9999
CCCCU	chrX:47074239-47074524(+)$1	285	112	117	14.9999
CCCCU	chr19:13064115-13064463(+)$1	348	13	18	14.9999
CCCCU	chr16:28846400-28846609(+)$1	209	60	65	14.9999
CCCCU	chr12:54763191-54763488(-)$1	297	258	263	14.9999
CCCCU	chr17:80036349-80036623(-)$1	274	28	33	14.9999
CCCCU	chr14:23767090-23767431(-)$1	341	103	108	14.9999
CCCCU	chr17:7308542-7308911(+)$1	369	112	117	14.9999
CCCCU	chr3:9975832-9976127(+)$1	295	22	27	14.9999
CCCCU	chr8:144357226-144357578(+)$1	352	37	42	14.9999
CCCCU	chr22:19838299-19838601(-)$1	302	267	272	14.9999
CCCCU	chr11:65325292-65325626(-)$1	334	55	60	14.9999
ccccu	chr9:35829384-35829669(+)$1	285	81	86	14.9999
CCCCU	chr1:150524489-150524746(+)$1	257	15	20	14.9999
CCCCU	chr16:28846281-28846540(+)$1	259	179	184	14.9999
CCCCU	chr15:89442433-89442707(-)$1	274	145	150	14.9999
CCCCU	chr17:44108004-44108266(-)$1	262	99	104	14.9999
CCCCU	chrX:148561381-148561702(-)$1	321	52	57	14.9999
CCCCU	chrX:53406862-53407118(-)$1	256	175	180	14.9999
CCCCU	chr11:66011658-66011916(+)$1	258	28	33	14.9999
CCCCU	chr3:47452260-47452592(+)$1	332	15	20	14.9999
CCCCU	chr21:47738487-47738840(-)$1	353	153	158	14.9999
CCCCU	chr22:19754410-19754674(+)$1	264	103	108	14.9999
ccccu	chr3:38455006-38455289(+)$1	283	131	136	14.9999
CCCCU	chr2:27264208-27264549(+)$1	341	108	113	14.9999
CCCCU	chr19:50161697-50161991(+)$1	294	86	91	14.9999
CCCCU	chr15:89442260-89442594(-)$1	334	32	37	14.9999
CCCCU	chr19:3053479-3053734(-)$1	255	124	129	14.9999
CCCCU	chr17:8063630-8063927(-)$1	297	9	14	14.9999
CCCCU	chr19:14202818-14203093(-)$1	275	7	12	14.9999
CCCCU	chr16:28848234-28848477(+)$1	243	69	74	14.9999
CCCCU	chr9:139728249-139728573(+)$1	324	75	80	14.9999
CCCCU	chr12:22778660-22779105(+)$1	445	4	9	14.9999
CCCCU	chr20:49199320-49199594(+)$1	274	104	109	14.9999
CCCCU	chr3:47452166-47452432(+)$1	266	44	49	14.9999
CCCCU	chr19:11465297-11465586(+)$1	289	96	101	14.9999
CCCCU	chr19:47990841-47991143(-)$1	302	285	290	14.9999
CCCCU	chr5:175955696-175955937(-)$1	241	5	10	14.9999

#otherMatches

#Struct PSSM
ooooe	chr14:23595237-23595487(-)$1	250	126	131	14.9999
nniii	chr4:726039-726331(+)$1	292	42	47	14.9999
:::::	chr7:100075625-100075945(-)$1	320	0	5	14.9999
LLEEE	chr1:26607590-26607847(+)$1	257	43	48	14.9999
nneee	chr19:3465860-3466124(+)$1	264	12	17	14.9999
88888	chr5:176910325-176910595(-)$1	270	157	162	14.9999
bb::e	chr1:27733085-27733314(-)$1	229	68	73	14.9999
ddd44	chr7:150929593-150929850(+)$1	257	58	63	14.9999
:::::	chr7:150929650-150929907(+)$1	257	1	6	14.9999
EEEE{	chr11:60899189-60899457(-)$1	268	82	87	14.9999
eee22	chr16:28846885-28847128(+)$1	243	99	104	14.9999
GGGGG	chr16:30675933-30676184(+)$1	251	90	95	14.9999
:::bb	chr14:24615879-24616343(-)$1	464	57	62	14.9999
+++++	chr5:176963392-176963741(-)$1	349	46	51	14.9999
:::::	chr3:47459045-47459400(-)$1	355	6	11	14.9999
qqqqq	chr7:150742814-150743180(+)$1	366	155	160	14.9999
22eee	chr17:5487376-5487702(-)$1	326	129	134	14.9999
ooooo	chr19:51323544-51323864(-)$1	320	102	107	14.9999
^^^^^	chr6:35260171-35260442(+)$1	271	91	96	14.9999
c::::	chr16:69599924-69600183(+)$1	259	26	31	14.9999
^^^^^	chr11:65622351-65622606(-)$1	255	124	129	14.9999
:::::	chr1:153923948-153924220(-)$1	272	187	192	14.9999
:::::	chr17:80708893-80709151(+)$1	258	8	13	14.9999
:::::	chr19:56173198-56173445(+)$1	247	102	107	14.9999
ff^^^	chr17:30469880-30470166(+)$1	286	27	32	14.9999
:::::	chr19:8468915-8469234(+)$1	319	80	85	14.9999
ooooo	chr1:1250896-1251182(-)$1	286	61	66	14.9999
:::::	chr21:34915621-34915891(+)$1	270	113	118	14.9999
:::::	chr1:227179480-227179764(-)$1	284	55	60	14.9999
33eee	chr7:72416686-72416954(+)$1	268	94	99	14.9999
:::::	chr17:34052818-34053140(+)$1	322	158	163	14.9999
:::::	chr3:14529762-14530116(+)$1	354	11	16	14.9999
===[b	chr17:47788594-47788885(-)$1	291	71	76	14.9999
CCCCC	chr19:49605438-49605744(+)$1	306	80	85	14.9999
UUUUU	chr6:32136700-32137010(-)$1	310	57	62	14.9999
77777	chr16:11966625-11966890(-)$1	265	243	248	14.9999
:::::	chr2:74588300-74588621(-)$1	321	6	11	14.9999
:::::	chr11:45826884-45827246(+)$1	362	6	11	14.9999
^^^^^	chr19:3630611-3630898(-)$1	287	101	106	14.9999
IIIII	chr12:54763865-54764161(-)$1	296	135	140	14.9999
f22cc	chr10:121355982-121356228(-)$1	246	171	176	14.9999
$$$$$	chrX:47074239-47074524(+)$1	285	112	117	14.9999
ddooo	chr19:13064115-13064463(+)$1	348	13	18	14.9999
coooo	chr16:28846400-28846609(+)$1	209	60	65	14.9999
ccqqq	chr12:54763191-54763488(-)$1	297	258	263	14.9999
5555e	chr17:80036349-80036623(-)$1	274	28	33	14.9999
FFFFF	chr14:23767090-23767431(-)$1	341	103	108	14.9999
:::::	chr17:7308542-7308911(+)$1	369	112	117	14.9999
c22ff	chr3:9975832-9976127(+)$1	295	22	27	14.9999
66666	chr8:144357226-144357578(+)$1	352	37	42	14.9999
ggggg	chr22:19838299-19838601(-)$1	302	267	272	14.9999
KDDDD	chr11:65325292-65325626(-)$1	334	55	60	14.9999
c>>>>	chr9:35829384-35829669(+)$1	285	81	86	14.9999
lllff	chr1:150524489-150524746(+)$1	257	15	20	14.9999
BBEEE	chr16:28846281-28846540(+)$1	259	179	184	14.9999
===xx	chr15:89442433-89442707(-)$1	274	145	150	14.9999
&&&&&	chr17:44108004-44108266(-)$1	262	99	104	14.9999
ccrrr	chrX:148561381-148561702(-)$1	321	52	57	14.9999
&&bbq	chrX:53406862-53407118(-)$1	256	175	180	14.9999
qqqqq	chr11:66011658-66011916(+)$1	258	28	33	14.9999
:::::	chr3:47452260-47452592(+)$1	332	15	20	14.9999
:::ff	chr21:47738487-47738840(-)$1	353	153	158	14.9999
uuuuu	chr22:19754410-19754674(+)$1	264	103	108	14.9999
:::::	chr3:38455006-38455289(+)$1	283	131	136	14.9999
dd::F	chr2:27264208-27264549(+)$1	341	108	113	14.9999
obbbb	chr19:50161697-50161991(+)$1	294	86	91	14.9999
ddd::	chr15:89442260-89442594(-)$1	334	32	37	14.9999
"""bb	chr19:3053479-3053734(-)$1	255	124	129	14.9999
::BBK	chr17:8063630-8063927(-)$1	297	9	14	14.9999
GGGGG	chr19:14202818-14203093(-)$1	275	7	12	14.9999
=====	chr16:28848234-28848477(+)$1	243	69	74	14.9999
nnnnn	chr9:139728249-139728573(+)$1	324	75	80	14.9999
:::::	chr12:22778660-22779105(+)$1	445	4	9	14.9999
""acc	chr20:49199320-49199594(+)$1	274	104	109	14.9999
GGGGG	chr3:47452166-47452432(+)$1	266	44	49	14.9999
:::::	chr19:11465297-11465586(+)$1	289	96	101	14.9999
C~~~~	chr19:47990841-47991143(-)$1	302	285	290	14.9999
FFFFF	chr5:175955696-175955937(-)$1	241	5	10	14.9999

#DB
....)	chr14:23595237-23595487(-)$1	1	126	131	14.9999
..)))	chr4:726039-726331(+)$1	1	42	47	14.9999
.....	chr7:100075625-100075945(-)$1	1	0	5	14.9999
..(((	chr1:26607590-26607847(+)$1	1	43	48	14.9999
..)))	chr19:3465860-3466124(+)$1	1	12	17	14.9999
.....	chr5:176910325-176910595(-)$1	1	157	162	14.9999
))..(	chr1:27733085-27733314(-)$1	1	68	73	14.9999
)))..	chr7:150929593-150929850(+)$1	1	58	63	14.9999
.....	chr7:150929650-150929907(+)$1	1	1	6	14.9999
((((.	chr11:60899189-60899457(-)$1	1	82	87	14.9999
)))..	chr16:28846885-28847128(+)$1	1	99	104	14.9999
(((((	chr16:30675933-30676184(+)$1	1	90	95	14.9999
...((	chr14:24615879-24616343(-)$1	1	57	62	14.9999
.....	chr5:176963392-176963741(-)$1	1	46	51	14.9999
.....	chr3:47459045-47459400(-)$1	1	6	11	14.9999
.....	chr7:150742814-150743180(+)$1	1	155	160	14.9999
..)))	chr17:5487376-5487702(-)$1	1	129	134	14.9999
.....	chr19:51323544-51323864(-)$1	1	102	107	14.9999
.....	chr6:35260171-35260442(+)$1	1	91	96	14.9999
)....	chr16:69599924-69600183(+)$1	1	26	31	14.9999
.....	chr11:65622351-65622606(-)$1	1	124	129	14.9999
.....	chr1:153923948-153924220(-)$1	1	187	192	14.9999
.....	chr17:80708893-80709151(+)$1	1	8	13	14.9999
.....	chr19:56173198-56173445(+)$1	1	102	107	14.9999
((...	chr17:30469880-30470166(+)$1	1	27	32	14.9999
.....	chr19:8468915-8469234(+)$1	1	80	85	14.9999
.....	chr1:1250896-1251182(-)$1	1	61	66	14.9999
.....	chr21:34915621-34915891(+)$1	1	113	118	14.9999
.....	chr1:227179480-227179764(-)$1	1	55	60	14.9999
..)))	chr7:72416686-72416954(+)$1	1	94	99	14.9999
.....	chr17:34052818-34053140(+)$1	1	158	163	14.9999
.....	chr3:14529762-14530116(+)$1	1	11	16	14.9999
(((.(	chr17:47788594-47788885(-)$1	1	71	76	14.9999
(((((	chr19:49605438-49605744(+)$1	1	80	85	14.9999
.....	chr6:32136700-32137010(-)$1	1	57	62	14.9999
.....	chr16:11966625-11966890(-)$1	1	243	248	14.9999
.....	chr2:74588300-74588621(-)$1	1	6	11	14.9999
.....	chr11:45826884-45827246(+)$1	1	6	11	14.9999
.....	chr19:3630611-3630898(-)$1	1	101	106	14.9999
(((((	chr12:54763865-54764161(-)$1	1	135	140	14.9999
)..))	chr10:121355982-121356228(-)$1	1	171	176	14.9999
.....	chrX:47074239-47074524(+)$1	1	112	117	14.9999
((...	chr19:13064115-13064463(+)$1	1	13	18	14.9999
(....	chr16:28846400-28846609(+)$1	1	60	65	14.9999
((...	chr12:54763191-54763488(-)$1	1	258	263	14.9999
....)	chr17:80036349-80036623(-)$1	1	28	33	14.9999
)))))	chr14:23767090-23767431(-)$1	1	103	108	14.9999
.....	chr17:7308542-7308911(+)$1	1	112	117	14.9999
)..))	chr3:9975832-9976127(+)$1	1	22	27	14.9999
.....	chr8:144357226-144357578(+)$1	1	37	42	14.9999
)))))	chr22:19838299-19838601(-)$1	1	267	272	14.9999
.((((	chr11:65325292-65325626(-)$1	1	55	60	14.9999
)....	chr9:35829384-35829669(+)$1	1	81	86	14.9999
...))	chr1:150524489-150524746(+)$1	1	15	20	14.9999
)))))	chr16:28846281-28846540(+)$1	1	179	184	14.9999
(((..	chr15:89442433-89442707(-)$1	1	145	150	14.9999
.....	chr17:44108004-44108266(-)$1	1	99	104	14.9999
((...	chrX:148561381-148561702(-)$1	1	52	57	14.9999
..((.	chrX:53406862-53407118(-)$1	1	175	180	14.9999
.....	chr11:66011658-66011916(+)$1	1	28	33	14.9999
.....	chr3:47452260-47452592(+)$1	1	15	20	14.9999
...((	chr21:47738487-47738840(-)$1	1	153	158	14.9999
.....	chr22:19754410-19754674(+)$1	1	103	108	14.9999
.....	chr3:38455006-38455289(+)$1	1	131	136	14.9999
))..(	chr2:27264208-27264549(+)$1	1	108	113	14.9999
.))))	chr19:50161697-50161991(+)$1	1	86	91	14.9999
)))..	chr15:89442260-89442594(-)$1	1	32	37	14.9999
...((	chr19:3053479-3053734(-)$1	1	124	129	14.9999
..((.	chr17:8063630-8063927(-)$1	1	9	14	14.9999
(((((	chr19:14202818-14203093(-)$1	1	7	12	14.9999
)))))	chr16:28848234-28848477(+)$1	1	69	74	14.9999
.....	chr9:139728249-139728573(+)$1	1	75	80	14.9999
.....	chr12:22778660-22779105(+)$1	1	4	9	14.9999
..(((	chr20:49199320-49199594(+)$1	1	104	109	14.9999
(((((	chr3:47452166-47452432(+)$1	1	44	49	14.9999
.....	chr19:11465297-11465586(+)$1	1	96	101	14.9999
)....	chr19:47990841-47991143(-)$1	1	285	290	14.9999
(((((	chr5:175955696-175955937(-)$1	1	5	10	14.9999

#PSSM
C : 0.83	c : 0.16	
C : 0.83	c : 0.16	
C : 0.83	c : 0.16	
C : 0.83	c : 0.16	
U : 0.83	u : 0.16	

#score	1169.9999999999998
#seq	78
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_CDS_m1_run2.nuc.txt

#NT
CUGGUGGGGGC	chr17:76116794-76117062(-)$1	268	76	87	16.5714
GCGGUGGAGGU	chr19:805384-805661(+)$1	277	60	71	21.5714
GUGGUAAAGGU	chr6:26285603-26285848(-)$1	245	131	142	18.7142
GUGGUGGGGUU	chr6:26027307-26027529(-)$1	222	170	181	20.3809
GUGGUAGAGGA	chr6:86324670-86324932(-)$1	262	82	93	20.1428
GUGGUGGAGGA	chr7:26233101-26233345(-)$1	244	82	93	23.4761
gugguggaggu	chr16:31196228-31196553(+)$1	325	106	117	26.0952
GUGGUGGAGGU	chr2:178081324-178081571(+)$1	247	130	141	26.0952
GUGGUGGAGGU	chr2:178081371-178081611(+)$1	240	83	94	26.0952
AUGGUGGUGGU	chr16:28841029-28841298(+)$1	269	120	131	19.4285
GUGGUGGAGGA	chr7:26233145-26233415(-)$1	270	152	163	23.4761
GUGGUCGAGGA	chr1:78429210-78429509(-)$1	299	137	148	19.6666
GUGGUGGGGUU	chr6:26027258-26027485(-)$1	227	126	137	20.3809
gugguggaggu	chr16:31196174-31196428(+)$1	254	160	171	26.0952
GUGGUAAAGGU	chr6:26285504-26285803(-)$1	299	86	97	18.7142
GUACUGGAGGU	chr17:76116991-76117214(-)$1	223	92	103	17.2857
guggugguggu	chr16:31201578-31201815(+)$1	237	53	64	23.7142
GUGAUGGUGGU	chr8:110346553-110346808(+)$1	255	141	152	19.4285
gugguggaggu	chr2:178081486-178081724(+)$1	238	110	121	26.0952
GUGGUGGGGUU	chr6:26027329-26027553(-)$1	224	194	205	20.3809

#otherMatches

#Struct PSSM
$a[eeeee[bb	chr16:31196353-31196604(+)$1	251	44	55	20.1428
FFFFF:eeeee	chr17:76116794-76117062(-)$1	268	76	87	16.5714
lleeeee22ff	chr19:805384-805661(+)$1	277	60	71	21.5714
qqqqqqqqccc	chr6:26285603-26285848(-)$1	245	131	142	18.7142
miiiiiiiii4	chr6:26027307-26027529(-)$1	222	170	181	20.3809
ffff"""bb[d	chr6:86324670-86324932(-)$1	262	82	93	20.1428
DDDLLLFFFFF	chr7:26233101-26233345(-)$1	244	82	93	23.4761
ldddd333ccc	chr16:31196228-31196553(+)$1	325	106	117	26.0952
]a]ffffff::	chr2:178081324-178081571(+)$1	247	130	141	26.0952
HHHHKKHHHHH	chr2:178081371-178081611(+)$1	240	83	94	26.0952
:A{JJJJJJJJ	chr16:28841029-28841298(+)$1	269	120	131	19.4285
""cccnnnnnc	chr7:26233145-26233415(-)$1	270	152	163	23.4761
mmdddd]ccc:	chr1:78429210-78429509(-)$1	299	137	148	19.6666
miiiiiiiii4	chr6:26027258-26027485(-)$1	227	126	137	20.3809
hhhhh:IIIII	chr16:31196174-31196428(+)$1	254	160	171	26.0952
qqqqqqqqccc	chr6:26285504-26285803(-)$1	299	86	97	18.7142
mmmmccc]bb]	chr17:76116991-76117214(-)$1	223	92	103	17.2857
2a]eeeee22e	chr16:31201578-31201815(+)$1	237	53	64	23.7142
f!!eeeeennn	chr8:110346553-110346808(+)$1	255	141	152	19.4285
4444ffffff4	chr2:178081486-178081724(+)$1	238	110	121	26.0952
miiiiiiiii4	chr6:26027329-26027553(-)$1	224	194	205	20.3809

#DB
.(.(((((.((	chr16:31196353-31196604(+)$1	1	44	55	20.1428
(((((.(((((	chr17:76116794-76117062(-)$1	1	76	87	16.5714
..)))))..))	chr19:805384-805661(+)$1	1	60	71	21.5714
........)))	chr6:26285603-26285848(-)$1	1	131	142	18.7142
.))))))))).	chr6:26027307-26027529(-)$1	1	170	181	20.3809
((((...((.(	chr6:86324670-86324932(-)$1	1	82	93	20.1428
(((...(((((	chr7:26233101-26233345(-)$1	1	82	93	23.4761
.))))...)))	chr16:31196228-31196553(+)$1	1	106	117	26.0952
.).))))))..	chr2:178081324-178081571(+)$1	1	130	141	26.0952
((((..(((((	chr2:178081371-178081611(+)$1	1	83	94	26.0952
.(.((((((((	chr16:28841029-28841298(+)$1	1	120	131	19.4285
..(((.....)	chr7:26233145-26233415(-)$1	1	152	163	23.4761
..)))).))).	chr1:78429210-78429509(-)$1	1	137	148	19.6666
.))))))))).	chr6:26027258-26027485(-)$1	1	126	137	20.3809
))))).)))))	chr16:31196174-31196428(+)$1	1	160	171	26.0952
........)))	chr6:26285504-26285803(-)$1	1	86	97	18.7142
....))).)).	chr17:76116991-76117214(-)$1	1	92	103	17.2857
.).)))))..)	chr16:31201578-31201815(+)$1	1	53	64	23.7142
(..(((((...	chr8:110346553-110346808(+)$1	1	141	152	19.4285
....)))))).	chr2:178081486-178081724(+)$1	1	110	121	26.0952
.))))))))).	chr6:26027329-26027553(-)$1	1	194	205	20.3809

#PSSM
G : 0.66	g : 0.23	C : 0.04	A : 0.04	
U : 0.71	u : 0.23	C : 0.04	
G : 0.71	g : 0.23	A : 0.04	
G : 0.66	g : 0.23	C : 0.04	A : 0.04	
U : 0.76	u : 0.23	
G : 0.57	g : 0.23	A : 0.14	C : 0.04	
G : 0.66	g : 0.23	A : 0.09	
A : 0.47	G : 0.19	a : 0.14	U : 0.09	c : 0.04	u : 0.04	
G : 0.76	g : 0.23	
G : 0.61	g : 0.23	U : 0.14	
U : 0.52	A : 0.19	u : 0.19	c : 0.04	C : 0.04	

#score	453.95238095238125
#seq	21
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_transcript_m2_run1.nuc.txt

#NT
UCU	chr14:24783075-24783337(+)$1	262	70	73	8.9999
UCU	chr14:23236583-23236844(+)$1	261	8	11	8.9999
UCU	chr17:45266346-45266605(-)$1	259	107	110	8.9999
UCU	chr6:75964447-75964690(-)$1	243	142	145	8.9999
UCU	chr6:119500112-119500328(-)$1	216	3	6	8.9999
UCU	chr3:194123608-194123864(-)$1	256	80	83	8.9999
UCU	chr1:76253210-76253451(+)$1	241	156	159	8.9999
UCU	chr3:128888920-128889184(-)$1	264	48	51	8.9999
UCU	chr6:167360034-167360252(-)$1	218	1	4	8.9999
UCU	chr1:169101286-169101520(+)$1	234	3	6	8.9999
UCU	chr2:32757109-32757397(+)$1	288	74	77	8.9999
UCU	chr15:52843905-52844156(-)$1	251	48	51	8.9999
UCU	chr1:146686324-146686596(-)$1	272	6	9	8.9999
UCU	chr16:18804149-18804429(-)$1	280	24	27	8.9999
UCU	chr2:216231387-216231636(-)$1	249	164	167	8.9999
ucu	chr20:43560578-43560901(+)$1	323	10	13	8.9999
ucu	chr17:70549432-70549699(-)$1	267	84	87	8.9999
UCU	chr13:98930683-98930937(+)$1	254	107	110	8.9999
ucu	chr1:988275-988577(+)$1	302	96	99	8.9999
ucu	chr1:55530033-55530252(+)$1	219	81	84	8.9999
UCU	chr2:42491799-42492014(+)$1	215	27	30	8.9999
UCU	chr15:64430209-64430495(+)$1	286	55	58	8.9999
UCU	chr4:166419269-166419496(+)$1	227	66	69	8.9999
UCU	chr2:216225509-216225756(-)$1	247	183	186	8.9999
UCU	chrX:132669913-132670157(-)$1	244	50	53	8.9999
UCU	chr2:21224441-21224649(-)$1	208	43	46	8.9999
UCU	chr10:96117104-96117362(-)$1	258	7	10	8.9999
UCU	chr19:48885867-48886107(-)$1	240	30	33	8.9999
UCU	chr2:188330883-188331118(-)$1	235	18	21	8.9999
UCU	chr11:70505752-70505979(-)$1	227	36	39	8.9999
UCU	chr17:6609793-6610047(-)$1	254	62	65	8.9999
UCU	chr3:149087404-149087682(-)$1	278	268	271	8.9999
ucu	chr11:65199410-65199651(+)$1	241	15	18	8.9999
UCU	chr17:40732917-40733161(-)$1	244	45	48	8.9999
UCU	chr12:51325945-51326194(+)$1	249	65	68	8.9999
UCU	chr11:65272257-65272462(+)$1	205	14	17	8.9999
UCU	chr17:40931002-40931282(+)$1	280	9	12	8.9999
UCU	chr2:11356091-11356342(-)$1	251	3	6	8.9999
UCU	chr2:228682086-228682321(+)$1	235	40	43	8.9999
UCU	chr12:104341556-104341779(+)$1	223	97	100	8.9999
UCU	chr2:21247351-21247585(-)$1	234	21	24	8.9999
UCU	chr8:97622573-97622801(+)$1	228	11	14	8.9999
UCU	chr7:128411252-128411501(+)$1	249	27	30	8.9999
UCU	chr1:160278725-160278978(-)$1	253	2	5	8.9999
UCU	chr7:73929835-73930062(+)$1	227	50	53	8.9999
UCU	chr14:39819552-39819904(+)$1	352	32	35	8.9999
ucu	chr11:67833030-67833332(-)$1	302	147	150	8.9999
UCU	chr2:71607617-71607914(+)$1	297	71	74	8.9999
UCU	chr11:65272251-65272453(+)$1	202	1	4	8.9999
UCU	chr21:44268271-44268544(-)$1	273	159	162	8.9999
UCU	chr1:109642860-109643064(+)$1	204	134	137	8.9999
UCU	chr4:74321319-74321546(+)$1	227	49	52	8.9999
UCU	chr20:10625559-10625808(-)$1	249	41	44	8.9999
UCU	chr1:20808971-20809218(-)$1	247	14	17	8.9999
UCU	chr6:122765948-122766248(-)$1	300	35	38	8.9999
UCU	chr3:149087155-149087377(-)$1	222	4	7	8.9999
UCU	chr6:109629326-109629617(+)$1	291	44	47	8.9999
UCU	chr2:188395309-188395582(+)$1	273	11	14	8.9999
UCU	chr11:121437739-121438005(+)$1	266	162	165	8.9999
UCU	chr15:66783376-66783634(+)$1	258	133	136	8.9999
UCU	chr3:183476943-183477211(+)$1	268	7	10	8.9999
UCU	chr2:167232012-167232294(-)$1	282	27	30	8.9999
UCU	chr15:39889399-39889692(+)$1	293	16	19	8.9999
UCU	chr12:106632567-106632827(-)$1	260	21	24	8.9999
UCU	chr6:7251150-7251445(+)$1	295	115	118	8.9999
UCU	chr6:32948859-32949143(+)$1	284	76	79	8.9999
UCU	chrX:133930919-133931240(-)$1	321	59	62	8.9999
UCU	chr20:45985198-45985480(-)$1	282	3	6	8.9999
UCU	chr3:195777741-195777962(-)$1	221	1	4	8.9999
UCU	chr12:46760683-46760937(-)$1	254	48	51	8.9999
ucu	chr4:1810199-1810443(+)$1	244	70	73	8.9999
UCU	chr20:34317071-34317321(-)$1	250	11	14	8.9999
UCU	chr6:119500504-119500743(-)$1	239	4	7	8.9999
UCU	chr19:2336618-2336966(+)$1	348	5	8	8.9999
UCU	chr5:42807000-42807249(-)$1	249	21	24	8.9999
UCU	chr3:37903836-37904162(+)$1	326	163	166	8.9999
UCU	chrX:108971444-108971727(-)$1	283	45	48	8.9999
UCU	chr2:242187236-242187499(-)$1	263	78	81	8.9999
UCU	chr17:7016479-7016721(-)$1	242	184	187	8.9999
UCU	chr1:207932992-207933240(+)$1	248	15	18	8.9999
UCU	chr17:40023458-40023721(-)$1	263	150	153	8.9999
UCU	chr14:39502242-39502472(-)$1	230	103	106	8.9999
UCU	chr2:114476679-114476941(-)$1	262	38	41	8.9999
UCU	chr11:47814164-47814425(-)$1	261	12	15	8.9999
UCU	chr20:33059235-33059490(+)$1	255	0	3	8.9999
UCU	chr16:2819241-2819497(+)$1	256	54	57	8.9999
UCU	chr20:34295044-34295284(-)$1	240	184	187	8.9999
UCU	chr12:77236673-77236951(+)$1	278	54	57	8.9999
UCU	chr17:30706176-30706441(+)$1	265	31	34	8.9999
UCU	chr6:75964301-75964548(-)$1	247	0	3	8.9999
UCU	chr13:92001942-92002235(+)$1	293	43	46	8.9999
UCU	chr17:7012837-7013111(-)$1	274	228	231	8.9999
UCU	chr2:44151955-44152282(-)$1	327	60	63	8.9999

#otherMatches

#Struct PSSM
LLL	chr5:43293992-43294246(-)$1	254	34	37	8.9999
ddd	chr14:24783075-24783337(+)$1	262	70	73	8.9999
ggg	chr14:23236583-23236844(+)$1	261	8	11	8.9999
bbe	chr17:45266346-45266605(-)$1	259	107	110	8.9999
ppp	chr6:75964447-75964690(-)$1	243	142	145	8.9999
:::	chr6:119500112-119500328(-)$1	216	3	6	8.9999
ccc	chr3:194123608-194123864(-)$1	256	80	83	8.9999
ggg	chr1:76253210-76253451(+)$1	241	156	159	8.9999
###	chr3:128888920-128889184(-)$1	264	48	51	8.9999
:::	chr6:167360034-167360252(-)$1	218	1	4	8.9999
dd&	chr1:169101286-169101520(+)$1	234	3	6	8.9999
ggg	chr2:32757109-32757397(+)$1	288	74	77	8.9999
uuu	chr15:52843905-52844156(-)$1	251	48	51	8.9999
:::	chr1:146686324-146686596(-)$1	272	6	9	8.9999
FFF	chr16:18804149-18804429(-)$1	280	24	27	8.9999
33f	chr2:216231387-216231636(-)$1	249	164	167	8.9999
ggg	chr20:43560578-43560901(+)$1	323	10	13	8.9999
""=	chr17:70549432-70549699(-)$1	267	84	87	8.9999
ddd	chr13:98930683-98930937(+)$1	254	107	110	8.9999
occ	chr1:988275-988577(+)$1	302	96	99	8.9999
gg5	chr1:55530033-55530252(+)$1	219	81	84	8.9999
JJJ	chr2:42491799-42492014(+)$1	215	27	30	8.9999
c!!	chr15:64430209-64430495(+)$1	286	55	58	8.9999
hhh	chr4:166419269-166419496(+)$1	227	66	69	8.9999
ooo	chr2:216225509-216225756(-)$1	247	183	186	8.9999
e[e	chrX:132669913-132670157(-)$1	244	50	53	8.9999
d::	chr2:21224441-21224649(-)$1	208	43	46	8.9999
===	chr10:96117104-96117362(-)$1	258	7	10	8.9999
ooc	chr19:48885867-48886107(-)$1	240	30	33	8.9999
:::	chr2:188330883-188331118(-)$1	235	18	21	8.9999
hhh	chr11:70505752-70505979(-)$1	227	36	39	8.9999
ooo	chr17:6609793-6610047(-)$1	254	62	65	8.9999
nnc	chr3:149087404-149087682(-)$1	278	268	271	8.9999
d!!	chr11:65199410-65199651(+)$1	241	15	18	8.9999
!!e	chr17:40732917-40733161(-)$1	244	45	48	8.9999
EEE	chr12:51325945-51326194(+)$1	249	65	68	8.9999
CNN	chr11:65272257-65272462(+)$1	205	14	17	8.9999
###	chr17:40931002-40931282(+)$1	280	9	12	8.9999
:::	chr2:11356091-11356342(-)$1	251	3	6	8.9999
:::	chr2:228682086-228682321(+)$1	235	40	43	8.9999
ddd	chr12:104341556-104341779(+)$1	223	97	100	8.9999
mmm	chr2:21247351-21247585(-)$1	234	21	24	8.9999
::e	chr8:97622573-97622801(+)$1	228	11	14	8.9999
"dd	chr7:128411252-128411501(+)$1	249	27	30	8.9999
:::	chr1:160278725-160278978(-)$1	253	2	5	8.9999
ddm	chr7:73929835-73930062(+)$1	227	50	53	8.9999
fdd	chr14:39819552-39819904(+)$1	352	32	35	8.9999
hhh	chr11:67833030-67833332(-)$1	302	147	150	8.9999
EEE	chr2:71607617-71607914(+)$1	297	71	74	8.9999
EEE	chr11:65272251-65272453(+)$1	202	1	4	8.9999
!dd	chr21:44268271-44268544(-)$1	273	159	162	8.9999
ddo	chr1:109642860-109643064(+)$1	204	134	137	8.9999
enn	chr4:74321319-74321546(+)$1	227	49	52	8.9999
$$$	chr20:10625559-10625808(-)$1	249	41	44	8.9999
''=	chr1:20808971-20809218(-)$1	247	14	17	8.9999
mmm	chr6:122765948-122766248(-)$1	300	35	38	8.9999
:::	chr3:149087155-149087377(-)$1	222	4	7	8.9999
fff	chr6:109629326-109629617(+)$1	291	44	47	8.9999
&&&	chr2:188395309-188395582(+)$1	273	11	14	8.9999
mee	chr11:121437739-121438005(+)$1	266	162	165	8.9999
::i	chr15:66783376-66783634(+)$1	258	133	136	8.9999
"hh	chr3:183476943-183477211(+)$1	268	7	10	8.9999
FFF	chr2:167232012-167232294(-)$1	282	27	30	8.9999
MMM	chr15:39889399-39889692(+)$1	293	16	19	8.9999
DDL	chr12:106632567-106632827(-)$1	260	21	24	8.9999
:::	chr6:7251150-7251445(+)$1	295	115	118	8.9999
^^^	chr6:32948859-32949143(+)$1	284	76	79	8.9999
hhh	chrX:133930919-133931240(-)$1	321	59	62	8.9999
HHH	chr20:45985198-45985480(-)$1	282	3	6	8.9999
DDD	chr3:195777741-195777962(-)$1	221	1	4	8.9999
PPP	chr12:46760683-46760937(-)$1	254	48	51	8.9999
mmm	chr4:1810199-1810443(+)$1	244	70	73	8.9999
ggg	chr20:34317071-34317321(-)$1	250	11	14	8.9999
:::	chr6:119500504-119500743(-)$1	239	4	7	8.9999
c!!	chr19:2336618-2336966(+)$1	348	5	8	8.9999
fff	chr5:42807000-42807249(-)$1	249	21	24	8.9999
bbe	chr3:37903836-37904162(+)$1	326	163	166	8.9999
qqq	chrX:108971444-108971727(-)$1	283	45	48	8.9999
ddd	chr2:242187236-242187499(-)$1	263	78	81	8.9999
hhh	chr17:7016479-7016721(-)$1	242	184	187	8.9999
eee	chr1:207932992-207933240(+)$1	248	15	18	8.9999
ddd	chr17:40023458-40023721(-)$1	263	150	153	8.9999
ooo	chr14:39502242-39502472(-)$1	230	103	106	8.9999
ddd	chr2:114476679-114476941(-)$1	262	38	41	8.9999
:hh	chr11:47814164-47814425(-)$1	261	12	15	8.9999
:::	chr20:33059235-33059490(+)$1	255	0	3	8.9999
FFF	chr16:2819241-2819497(+)$1	256	54	57	8.9999
::d	chr20:34295044-34295284(-)$1	240	184	187	8.9999
gcc	chr12:77236673-77236951(+)$1	278	54	57	8.9999
JJJ	chr17:30706176-30706441(+)$1	265	31	34	8.9999
:::	chr6:75964301-75964548(-)$1	247	0	3	8.9999
ddd	chr13:92001942-92002235(+)$1	293	43	46	8.9999
ccc	chr17:7012837-7013111(-)$1	274	228	231	8.9999
GGG	chr2:44151955-44152282(-)$1	327	60	63	8.9999

#DB
...	chr5:43293992-43294246(-)$1	1	34	37	8.9999
)))	chr14:24783075-24783337(+)$1	1	70	73	8.9999
(((	chr14:23236583-23236844(+)$1	1	8	11	8.9999
)))	chr17:45266346-45266605(-)$1	1	107	110	8.9999
...	chr6:75964447-75964690(-)$1	1	142	145	8.9999
...	chr6:119500112-119500328(-)$1	1	3	6	8.9999
)))	chr3:194123608-194123864(-)$1	1	80	83	8.9999
)))	chr1:76253210-76253451(+)$1	1	156	159	8.9999
...	chr3:128888920-128889184(-)$1	1	48	51	8.9999
...	chr6:167360034-167360252(-)$1	1	1	4	8.9999
((.	chr1:169101286-169101520(+)$1	1	3	6	8.9999
)))	chr2:32757109-32757397(+)$1	1	74	77	8.9999
...	chr15:52843905-52844156(-)$1	1	48	51	8.9999
...	chr1:146686324-146686596(-)$1	1	6	9	8.9999
(((	chr16:18804149-18804429(-)$1	1	24	27	8.9999
..)	chr2:216231387-216231636(-)$1	1	164	167	8.9999
(((	chr20:43560578-43560901(+)$1	1	10	13	8.9999
..(	chr17:70549432-70549699(-)$1	1	84	87	8.9999
)))	chr13:98930683-98930937(+)$1	1	107	110	8.9999
.))	chr1:988275-988577(+)$1	1	96	99	8.9999
)).	chr1:55530033-55530252(+)$1	1	81	84	8.9999
(((	chr2:42491799-42492014(+)$1	1	27	30	8.9999
(..	chr15:64430209-64430495(+)$1	1	55	58	8.9999
)))	chr4:166419269-166419496(+)$1	1	66	69	8.9999
...	chr2:216225509-216225756(-)$1	1	183	186	8.9999
(.(	chrX:132669913-132670157(-)$1	1	50	53	8.9999
)..	chr2:21224441-21224649(-)$1	1	43	46	8.9999
(((	chr10:96117104-96117362(-)$1	1	7	10	8.9999
..)	chr19:48885867-48886107(-)$1	1	30	33	8.9999
...	chr2:188330883-188331118(-)$1	1	18	21	8.9999
(((	chr11:70505752-70505979(-)$1	1	36	39	8.9999
...	chr17:6609793-6610047(-)$1	1	62	65	8.9999
..)	chr3:149087404-149087682(-)$1	1	268	271	8.9999
(..	chr11:65199410-65199651(+)$1	1	15	18	8.9999
..(	chr17:40732917-40733161(-)$1	1	45	48	8.9999
(((	chr12:51325945-51326194(+)$1	1	65	68	8.9999
(..	chr11:65272257-65272462(+)$1	1	14	17	8.9999
...	chr17:40931002-40931282(+)$1	1	9	12	8.9999
...	chr2:11356091-11356342(-)$1	1	3	6	8.9999
...	chr2:228682086-228682321(+)$1	1	40	43	8.9999
)))	chr12:104341556-104341779(+)$1	1	97	100	8.9999
...	chr2:21247351-21247585(-)$1	1	21	24	8.9999
..(	chr8:97622573-97622801(+)$1	1	11	14	8.9999
.((	chr7:128411252-128411501(+)$1	1	27	30	8.9999
...	chr1:160278725-160278978(-)$1	1	2	5	8.9999
((.	chr7:73929835-73930062(+)$1	1	50	53	8.9999
(((	chr14:39819552-39819904(+)$1	1	32	35	8.9999
)))	chr11:67833030-67833332(-)$1	1	147	150	8.9999
)))	chr2:71607617-71607914(+)$1	1	71	74	8.9999
(((	chr11:65272251-65272453(+)$1	1	1	4	8.9999
.((	chr21:44268271-44268544(-)$1	1	159	162	8.9999
((.	chr1:109642860-109643064(+)$1	1	134	137	8.9999
(..	chr4:74321319-74321546(+)$1	1	49	52	8.9999
...	chr20:10625559-10625808(-)$1	1	41	44	8.9999
..(	chr1:20808971-20809218(-)$1	1	14	17	8.9999
...	chr6:122765948-122766248(-)$1	1	35	38	8.9999
...	chr3:149087155-149087377(-)$1	1	4	7	8.9999
(((	chr6:109629326-109629617(+)$1	1	44	47	8.9999
...	chr2:188395309-188395582(+)$1	1	11	14	8.9999
.))	chr11:121437739-121438005(+)$1	1	162	165	8.9999
..(	chr15:66783376-66783634(+)$1	1	133	136	8.9999
.((	chr3:183476943-183477211(+)$1	1	7	10	8.9999
(((	chr2:167232012-167232294(-)$1	1	27	30	8.9999
...	chr15:39889399-39889692(+)$1	1	16	19	8.9999
((.	chr12:106632567-106632827(-)$1	1	21	24	8.9999
...	chr6:7251150-7251445(+)$1	1	115	118	8.9999
...	chr6:32948859-32949143(+)$1	1	76	79	8.9999
(((	chrX:133930919-133931240(-)$1	1	59	62	8.9999
(((	chr20:45985198-45985480(-)$1	1	3	6	8.9999
(((	chr3:195777741-195777962(-)$1	1	1	4	8.9999
...	chr12:46760683-46760937(-)$1	1	48	51	8.9999
...	chr4:1810199-1810443(+)$1	1	70	73	8.9999
(((	chr20:34317071-34317321(-)$1	1	11	14	8.9999
...	chr6:119500504-119500743(-)$1	1	4	7	8.9999
(..	chr19:2336618-2336966(+)$1	1	5	8	8.9999
(((	chr5:42807000-42807249(-)$1	1	21	24	8.9999
(((	chr3:37903836-37904162(+)$1	1	163	166	8.9999
...	chrX:108971444-108971727(-)$1	1	45	48	8.9999
(((	chr2:242187236-242187499(-)$1	1	78	81	8.9999
)))	chr17:7016479-7016721(-)$1	1	184	187	8.9999
(((	chr1:207932992-207933240(+)$1	1	15	18	8.9999
(((	chr17:40023458-40023721(-)$1	1	150	153	8.9999
...	chr14:39502242-39502472(-)$1	1	103	106	8.9999
)))	chr2:114476679-114476941(-)$1	1	38	41	8.9999
.((	chr11:47814164-47814425(-)$1	1	12	15	8.9999
...	chr20:33059235-33059490(+)$1	1	0	3	8.9999
(((	chr16:2819241-2819497(+)$1	1	54	57	8.9999
..(	chr20:34295044-34295284(-)$1	1	184	187	8.9999
(((	chr12:77236673-77236951(+)$1	1	54	57	8.9999
(((	chr17:30706176-30706441(+)$1	1	31	34	8.9999
...	chr6:75964301-75964548(-)$1	1	0	3	8.9999
(((	chr13:92001942-92002235(+)$1	1	43	46	8.9999
)))	chr17:7012837-7013111(-)$1	1	228	231	8.9999
(((	chr2:44151955-44152282(-)$1	1	60	63	8.9999

#PSSM
U : 0.92	u : 0.07	
C : 0.92	c : 0.07	
U : 0.92	u : 0.07	

#score	845.9999999999998
#seq	94
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_CDS_m3_run2.nuc.txt

#NT
GGGCCUG	chr7:100171695-100171981(-)$1	286	209	216	17.6406
GGGCCUG	chr20:60884671-60884893(-)$1	222	111	118	17.6406
GGGCUUG	chr1:155290189-155290467(+)$1	278	175	182	13.4218
GGACCUG	chr10:104180922-104181225(+)$1	303	194	201	13.8125
GGGCCUC	chr19:18544940-18545222(+)$1	282	131	138	13.1875
AGGCCUG	chr11:290841-291082(+)$1	241	0	7	13.3437
GGGGCUG	chr5:10262491-10262716(+)$1	225	188	195	13.3437
GGCCCUG	chr8:145737531-145737787(-)$1	256	219	226	13.6562
GGGCCUG	chr16:242827-243088(-)$1	261	249	256	17.6406
GGGCUUG	chr17:7127405-7127660(+)$1	255	80	87	13.4218
GGGCCUG	chr11:67817869-67818147(+)$1	278	127	134	17.6406
GCGCCUG	chr22:19711584-19711816(+)$1	232	83	90	13.0312
GGGCUUG	chr17:76113888-76114164(-)$1	276	88	95	13.4218
GGGCUUG	chr6:31639923-31640164(+)$1	241	33	40	13.4218
CGGCCUG	chr11:639706-639991(+)$1	285	193	200	13.3437
GGGCCUG	chr22:50016766-50017051(-)$1	285	63	70	17.6406
GGGCCUG	chr16:778841-779078(+)$1	237	148	155	17.6406
GGUCCUG	chr17:80443423-80443631(+)$1	208	163	170	13.5781
GGGCCUG	chr17:73823401-73823770(-)$1	369	223	230	17.6406
GGGCCUG	chrX:48652237-48652505(+)$1	268	211	218	17.6406
GGGCCUG	chr17:37009178-37009420(-)$1	242	194	201	17.6406
GGGCCUG	chr17:79526315-79526540(-)$1	225	179	186	17.6406
GGGCCUG	chr19:1407569-1407878(+)$1	309	249	256	17.6406
GGGUCUG	chr1:32827583-32827856(-)$1	273	6	13	13.2656
gugccug	chr19:41889442-41889750(+)$1	308	31	38	13.0312
GGGCCUU	chr19:50162936-50163186(-)$1	250	115	122	13.2656
GGGCCUG	chr16:89977515-89977774(+)$1	259	19	26	17.6406
CGGCCUG	chr1:1155930-1156230(-)$1	300	9	16	13.3437
GGGCCUG	chr19:41135327-41135578(+)$1	251	120	127	17.6406
GGUCCUG	chr19:798402-798726(+)$1	324	146	153	13.5781
UGGCCUG	chr11:67379512-67379786(+)$1	274	0	7	13.4218
GGACCUG	chr7:1474135-1474423(-)$1	288	219	226	13.8125
AGGCCUG	chr22:50685256-50685507(-)$1	251	180	187	13.3437
GGGCGUG	chr1:12089605-12089925(+)$1	320	47	54	13.1875
GGGCCGG	chr16:2871466-2871726(+)$1	260	128	135	13.3437
GGCCCUG	chr17:80445688-80445951(+)$1	263	155	162	13.6562
UGGCCUG	chr9:140005231-140005477(-)$1	246	159	166	13.4218
GGGCCUG	chr17:79993818-79994098(-)$1	280	252	259	17.6406
GGCCCUG	chr2:74689769-74690015(-)$1	246	176	183	13.6562
GGGCAUG	chr21:45223340-45223615(+)$1	275	80	87	13.1875
GAGCCUG	chr1:156109470-156109770(+)$1	300	252	259	13.1093
GGGGCUG	chr11:67053775-67054027(+)$1	252	125	132	13.3437
GGGCCUU	chr19:50163963-50164228(-)$1	265	39	46	13.2656
GGGCCUG	chr12:117476878-117477187(-)$1	309	109	116	17.6406
GGGCCUG	chrX:153195388-153195773(-)$1	385	219	226	17.6406
GGGCCUG	chr6:31937182-31937470(+)$1	288	147	154	17.6406
GGACCUG	chr22:20100122-20100380(-)$1	258	129	136	13.8125
GGGCCUG	chr22:19865540-19865810(-)$1	270	135	142	17.6406
GGGCCUG	chr11:639269-639549(+)$1	280	140	147	17.6406
GGGCCUC	chr19:2272586-2272821(+)$1	235	70	77	13.1875
GGGACUG	chr8:145106190-145106464(-)$1	274	18	25	13.1875
GGGUCUG	chr22:50873283-50873574(+)$1	291	56	63	13.2656
GGGCCUU	chr11:294550-294809(+)$1	259	229	236	13.2656
UGGCCUG	chr11:67379598-67379837(+)$1	239	126	133	13.4218
GAGCCUG	chr7:99751398-99751733(+)$1	335	187	194	13.1093
GGGCCUG	chr7:933374-933640(+)$1	266	223	230	17.6406
GGGCCGG	chr19:10407083-10407366(+)$1	283	229	236	13.3437
GGACCUG	chr22:20100027-20100296(-)$1	269	45	52	13.8125
GGGCCAG	chr1:150531382-150531623(+)$1	241	124	131	13.1093
GGGCCUG	chr16:67862274-67862503(-)$1	229	213	220	17.6406
GGGCCGG	chr16:31202251-31202498(+)$1	247	126	133	13.3437
gggccgg	chr19:49611416-49611734(+)$1	318	7	14	13.3437
GGGGCUG	chr19:18546275-18546521(-)$1	246	165	172	13.3437

#otherMatches

#Struct PSSM
::::ccc	chr22:20100593-20100847(-)$1	254	127	134	13.8125
=======	chr7:100171695-100171981(-)$1	286	209	216	17.6406
=======	chr20:60884671-60884893(-)$1	222	111	118	17.6406
:::eeee	chr1:155290189-155290467(+)$1	278	175	182	13.4218
333ccc:	chr10:104180922-104181225(+)$1	303	194	201	13.8125
IIIIIII	chr19:18544940-18545222(+)$1	282	131	138	13.1875
:::::::	chr11:290841-291082(+)$1	241	0	7	13.3437
YYDDDDF	chr5:10262491-10262716(+)$1	225	188	195	13.3437
nbbeeee	chr8:145737531-145737787(-)$1	256	219	226	13.6562
ggg22ee	chr16:242827-243088(-)$1	261	249	256	17.6406
C{GGGGG	chr17:7127405-7127660(+)$1	255	80	87	13.4218
dddd"""	chr11:67817869-67818147(+)$1	278	127	134	17.6406
EEEYYDD	chr22:19711584-19711816(+)$1	232	83	90	13.0312
ffffffi	chr17:76113888-76114164(-)$1	276	88	95	13.4218
DDDD{CC	chr6:31639923-31640164(+)$1	241	33	40	13.4218
]eeeeee	chr11:639706-639991(+)$1	285	193	200	13.3437
foooooo	chr22:50016766-50017051(-)$1	285	63	70	17.6406
ffffff3	chr16:778841-779078(+)$1	237	148	155	17.6406
cc]dddd	chr17:80443423-80443631(+)$1	208	163	170	13.5781
udddd33	chr17:73823401-73823770(-)$1	369	223	230	17.6406
]ffffff	chrX:48652237-48652505(+)$1	268	211	218	17.6406
iii[ass	chr17:37009178-37009420(-)$1	242	194	201	17.6406
dgggggg	chr17:79526315-79526540(-)$1	225	179	186	17.6406
FFFFFF}	chr19:1407569-1407878(+)$1	309	249	256	17.6406
gggggnn	chr1:32827583-32827856(-)$1	273	6	13	13.2656
dddd[bb	chr19:41889442-41889750(+)$1	308	31	38	13.0312
eeeeett	chr19:50162936-50163186(-)$1	250	115	122	13.2656
GGGKKCC	chr16:89977515-89977774(+)$1	259	19	26	17.6406
ggg"""b	chr1:1155930-1156230(-)$1	300	9	16	13.3437
ddddmmm	chr19:41135327-41135578(+)$1	251	120	127	17.6406
fffff[a	chr19:798402-798726(+)$1	324	146	153	13.5781
::ggggg	chr11:67379512-67379786(+)$1	274	0	7	13.4218
4444eee	chr7:1474135-1474423(-)$1	288	219	226	13.8125
ffffEEE	chr22:50685256-50685507(-)$1	251	180	187	13.3437
ccc]ddd	chr1:12089605-12089925(+)$1	320	47	54	13.1875
ddddacc	chr16:2871466-2871726(+)$1	260	128	135	13.3437
ddddeee	chr17:80445688-80445951(+)$1	263	155	162	13.6562
ffdddd!	chr9:140005231-140005477(-)$1	246	159	166	13.4218
CCC}FFF	chr17:79993818-79994098(-)$1	280	252	259	17.6406
YDDDDcc	chr2:74689769-74690015(-)$1	246	176	183	13.6562
CC{A{CC	chr21:45223340-45223615(+)$1	275	80	87	13.1875
oooccc]	chr1:156109470-156109770(+)$1	300	252	259	13.1093
hhhh[ee	chr11:67053775-67054027(+)$1	252	125	132	13.3437
qqeeeee	chr19:50163963-50164228(-)$1	265	39	46	13.2656
ECCCKKD	chr12:117476878-117477187(-)$1	309	109	116	17.6406
pppccc]	chrX:153195388-153195773(-)$1	385	219	226	17.6406
======e	chr6:31937182-31937470(+)$1	288	147	154	17.6406
ddqqqqq	chr22:20100122-20100380(-)$1	258	129	136	13.8125
d======	chr22:19865540-19865810(-)$1	270	135	142	17.6406
edddd##	chr11:639269-639549(+)$1	280	140	147	17.6406
eecccmm	chr19:2272586-2272821(+)$1	235	70	77	13.1875
HHH{ADD	chr8:145106190-145106464(-)$1	274	18	25	13.1875
ddd333f	chr22:50873283-50873574(+)$1	291	56	63	13.2656
cccmmmm	chr11:294550-294809(+)$1	259	229	236	13.2656
::ddddm	chr11:67379598-67379837(+)$1	239	126	133	13.4218
E{EEEEE	chr7:99751398-99751733(+)$1	335	187	194	13.1093
ffffeee	chr7:933374-933640(+)$1	266	223	230	17.6406
ccca[ee	chr19:10407083-10407366(+)$1	283	229	236	13.3437
nnnnccc	chr22:20100027-20100296(-)$1	269	45	52	13.8125
mccceee	chr1:150531382-150531623(+)$1	241	124	131	13.1093
lleeeee	chr16:67862274-67862503(-)$1	229	213	220	17.6406
dddccc"	chr16:31202251-31202498(+)$1	247	126	133	13.3437
::CCC{E	chr19:49611416-49611734(+)$1	318	7	14	13.3437
gggg$$$	chr19:18546275-18546521(-)$1	246	165	172	13.3437

#DB
....(((	chr22:20100593-20100847(-)$1	1	127	134	13.8125
)))))))	chr7:100171695-100171981(-)$1	1	209	216	17.6406
)))))))	chr20:60884671-60884893(-)$1	1	111	118	17.6406
...((((	chr1:155290189-155290467(+)$1	1	175	182	13.4218
...))).	chr10:104180922-104181225(+)$1	1	194	201	13.8125
(((((((	chr19:18544940-18545222(+)$1	1	131	138	13.1875
.......	chr11:290841-291082(+)$1	1	0	7	13.3437
..)))))	chr5:10262491-10262716(+)$1	1	188	195	13.3437
.))))))	chr8:145737531-145737787(-)$1	1	219	226	13.6562
)))..))	chr16:242827-243088(-)$1	1	249	256	17.6406
(.(((((	chr17:7127405-7127660(+)$1	1	80	87	13.4218
((((...	chr11:67817869-67818147(+)$1	1	127	134	17.6406
)))..))	chr22:19711584-19711816(+)$1	1	83	90	13.0312
)))))))	chr17:76113888-76114164(-)$1	1	88	95	13.4218
((((.((	chr6:31639923-31640164(+)$1	1	33	40	13.4218
.))))))	chr11:639706-639991(+)$1	1	193	200	13.3437
(......	chr22:50016766-50017051(-)$1	1	63	70	17.6406
)))))).	chr16:778841-779078(+)$1	1	148	155	17.6406
)).))))	chr17:80443423-80443631(+)$1	1	163	170	13.5781
.))))..	chr17:73823401-73823770(-)$1	1	223	230	17.6406
.))))))	chrX:48652237-48652505(+)$1	1	211	218	17.6406
(((.(..	chr17:37009178-37009420(-)$1	1	194	201	17.6406
)((((((	chr17:79526315-79526540(-)$1	1	179	186	17.6406
)))))).	chr19:1407569-1407878(+)$1	1	249	256	17.6406
(((((..	chr1:32827583-32827856(-)$1	1	6	13	13.2656
((((.((	chr19:41889442-41889750(+)$1	1	31	38	13.0312
(((((..	chr19:50162936-50163186(-)$1	1	115	122	13.2656
(((..((	chr16:89977515-89977774(+)$1	1	19	26	17.6406
(((...(	chr1:1155930-1156230(-)$1	1	9	16	13.3437
((((...	chr19:41135327-41135578(+)$1	1	120	127	17.6406
(((((.(	chr19:798402-798726(+)$1	1	146	153	13.5781
..(((((	chr11:67379512-67379786(+)$1	1	0	7	13.4218
....)))	chr7:1474135-1474423(-)$1	1	219	226	13.8125
)))))))	chr22:50685256-50685507(-)$1	1	180	187	13.3437
))).)))	chr1:12089605-12089925(+)$1	1	47	54	13.1875
(((((((	chr16:2871466-2871726(+)$1	1	128	135	13.3437
)))))))	chr17:80445688-80445951(+)$1	1	155	162	13.6562
))((((.	chr9:140005231-140005477(-)$1	1	159	166	13.4218
))).)))	chr17:79993818-79994098(-)$1	1	252	259	17.6406
.))))((	chr2:74689769-74690015(-)$1	1	176	183	13.6562
((.(.((	chr21:45223340-45223615(+)$1	1	80	87	13.1875
...))).	chr1:156109470-156109770(+)$1	1	252	259	13.1093
((((.((	chr11:67053775-67054027(+)$1	1	125	132	13.3437
..)))))	chr19:50163963-50164228(-)$1	1	39	46	13.2656
((((..(	chr12:117476878-117477187(-)$1	1	109	116	17.6406
...))).	chrX:153195388-153195773(-)$1	1	219	226	17.6406
))))))(	chr6:31937182-31937470(+)$1	1	147	154	17.6406
((.....	chr22:20100122-20100380(-)$1	1	129	136	13.8125
)((((((	chr22:19865540-19865810(-)$1	1	135	142	17.6406
(((((..	chr11:639269-639549(+)$1	1	140	147	17.6406
(((((..	chr19:2272586-2272821(+)$1	1	70	77	13.1875
(((.(((	chr8:145106190-145106464(-)$1	1	18	25	13.1875
)))...)	chr22:50873283-50873574(+)$1	1	56	63	13.2656
(((....	chr11:294550-294809(+)$1	1	229	236	13.2656
..((((.	chr11:67379598-67379837(+)$1	1	126	133	13.4218
(.(((((	chr7:99751398-99751733(+)$1	1	187	194	13.1093
)))))))	chr7:933374-933640(+)$1	1	223	230	17.6406
((((.((	chr19:10407083-10407366(+)$1	1	229	236	13.3437
....)))	chr22:20100027-20100296(-)$1	1	45	52	13.8125
.)))(((	chr1:150531382-150531623(+)$1	1	124	131	13.1093
..)))))	chr16:67862274-67862503(-)$1	1	213	220	17.6406
((((((.	chr16:31202251-31202498(+)$1	1	126	133	13.3437
..(((.(	chr19:49611416-49611734(+)$1	1	7	14	13.3437
((((...	chr19:18546275-18546521(-)$1	1	165	172	13.3437

#PSSM
G : 0.85	U : 0.04	A : 0.03	C : 0.03	g : 0.03	
G : 0.92	A : 0.03	C : 0.01	u : 0.01	g : 0.01	
G : 0.81	A : 0.07	C : 0.04	U : 0.03	g : 0.03	
C : 0.87	G : 0.04	U : 0.03	c : 0.03	A : 0.01	
C : 0.87	U : 0.06	c : 0.03	G : 0.01	A : 0.01	
U : 0.90	G : 0.04	u : 0.01	A : 0.01	g : 0.01	
G : 0.89	U : 0.04	C : 0.03	g : 0.03	

#score	946.03125
#seq	64
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_UTR_m1_run2.nuc.txt

#NT
gaggcggcggcgg	chr10:22610264-22610600(+)$1	336	40	53	29.9803
GCAGCGGCGGCGG	chr14:50359733-50359978(+)$1	245	69	82	23.2156
GAGGCGGCGGCAC	chr15:64752858-64753145(+)$1	287	222	235	21.2549
GAGGCGCCGGCGG	chr3:195635566-195635828(-)$1	262	235	248	25.4705
GAGGCCGCGGCGC	chr8:145159357-145159696(+)$1	339	264	277	21.6470
GACgcggcggcgg	chr1:167691198-167691472(+)$1	274	152	165	25.4705
guggcggcggcgg	chr17:61851567-61851837(+)$1	270	34	47	27.2352
GAGGCGGAGGCGU	chr4:174292038-174292345(+)$1	307	22	35	22.0392
GAGGGGGUGGAGG	chr14:77924354-77924698(+)$1	344	33	46	21.0588
ggggugggggcgg	chr4:2936006-2936281(-)$1	275	78	91	20.9607
GAGGUGGUGGCUG	chr20:34252580-34252828(-)$1	248	25	38	19.8823
guggcggcggcgg	chr2:62932862-62933155(+)$1	293	235	248	27.2352
gcggcggcggcgg	chr3:19988662-19988923(+)$1	261	98	111	27.5294
GCGGGGACGGCGG	chr19:2236081-2236355(-)$1	274	55	68	20.9607
GUGGCGGCGGCGG	chr14:100705155-100705451(+)$1	296	27	40	27.2352
gaggccgcggagg	chr2:97535520-97535792(-)$1	272	63	76	22.8235
gaggcggcggcgg	chr7:65338179-65338425(+)$1	246	153	166	29.9803
gagggggcggccg	chr20:361656-361904(+)$1	248	206	219	23.9019
GAGGCUGGGGAGG	chr4:53192-53445(+)$1	253	218	231	19.0000
gaggcggcggcgg	chr10:98346569-98346856(-)$1	287	188	201	29.9803
GAGGCGGAGACGG	chr3:41241024-41241262(+)$1	238	28	41	22.0392
gaggcggaggcgg	chr6:34664379-34664664(-)$1	285	29	42	26.6470
GCGGCGGCGGCGG	chr14:50360162-50360445(+)$1	283	218	231	27.5294
GAGGGGGCAGAGG	chr14:53258064-53258362(-)$1	298	29	42	19.9803
CCGGAGGCGGCGG	chr16:730440-730711(+)$1	271	211	224	20.1764
gaggaggaggcgg	chr17:43225892-43226156(+)$1	264	50	63	23.9999
gaggcggcggcgg	chr19:3062263-3062521(-)$1	258	197	210	29.9803
gaggaggaggagg	chr3:17783869-17784117(-)$1	248	92	105	20.6666
GAgggggcggcgg	chr19:1249810-1250086(+)$1	276	5	18	28.0196
GCGGCGGCCGCGG	chr19:3506246-3506574(+)$1	328	116	129	22.8235
GAGUCGGCGCCGG	chr16:75498330-75498611(-)$1	281	44	57	20.6666
gaggaggcgcggg	chr1:116915759-116916046(+)$1	287	91	104	19.0980
GCGGUGGCGGCGG	chr17:46125640-46125927(+)$1	287	110	123	24.9803
GAGGGGGCGGCCG	chr1:87380370-87380636(+)$1	266	115	128	23.9019
GAGGGUGCGGCUG	chrX:54835511-54835757(+)$1	246	38	51	20.1764
gagggugcggcug	chr9:140445562-140445825(+)$1	263	73	86	20.1764
GGGGGGGCGGAGG	chr7:158459765-158460126(-)$1	361	55	68	21.9411
GAggcggcggcgg	chr7:97736253-97736541(+)$1	288	6	19	29.9803
GAAGCGCCGGCGG	chr19:56166195-56166479(+)$1	284	159	172	21.1568
GGGGUAgcggcgg	chr1:153918926-153919191(-)$1	265	41	54	20.5686
guagcggcggcgg	chr19:39138225-39138529(+)$1	304	81	94	22.9215
GUGGGGGCGGGGG	chr19:56632442-56632729(-)$1	287	196	209	21.5490
GAGGCCGAGGAGG	chr11:118926679-118926905(-)$1	226	56	69	19.4901
GGGGCGGCGGCUG	chr8:15397783-15398069(+)$1	286	194	207	23.3137
GAGGUCGCGGCGG	chr1:110950106-110950397(-)$1	291	221	234	23.6078
GGGGCGGCGGCGG	chr17:2496901-2497195(+)$1	294	64	77	27.2352
gaggcggcggcgg	chr1:1822216-1822576(-)$1	360	101	114	29.9803
gaggcggcggcgg	chr6:149638909-149639174(+)$1	265	118	131	29.9803
GAGGCGGCGGCGG	chr14:32546368-32546625(+)$1	257	172	185	29.9803
ACGGCGGCGGCGG	chr15:66679268-66679550(+)$1	282	19	32	22.8235

#otherMatches

#Struct PSSM
======&&&&&&&	chr16:87865843-87866093(-)$1	250	87	100	20.6666
eeee22cccdddd	chr10:22610264-22610600(+)$1	336	40	53	29.9803
==]bbccc]hhhh	chr14:50359733-50359978(+)$1	245	69	82	23.2156
666bb22a]bb]c	chr15:64752858-64753145(+)$1	287	222	235	21.2549
::::eeeee[arr	chr3:195635566-195635828(-)$1	262	235	248	25.4705
ffff!!cccmmmm	chr8:145159357-145159696(+)$1	339	264	277	21.6470
YYA}DDDD}EEEE	chr1:167691198-167691472(+)$1	274	152	165	25.4705
========[bb[e	chr17:61851567-61851837(+)$1	270	34	47	27.2352
KKGGGGGGG:::g	chr4:174292038-174292345(+)$1	307	22	35	22.0392
CKKEEEEELLLEE	chr14:77924354-77924698(+)$1	344	33	46	21.0588
ffffff[a[bb[d	chr4:2936006-2936281(-)$1	275	78	91	20.9607
22ccc]bbccc[b	chr20:34252580-34252828(-)$1	248	25	38	19.8823
bb[bb[bb[eeee	chr2:62932862-62933155(+)$1	293	235	248	27.2352
B{BB{JJJJJJJJ	chr3:19988662-19988923(+)$1	261	98	111	27.5294
bbdddd]dddd]f	chr19:2236081-2236355(-)$1	274	55	68	20.9607
cc[bbmmmmbb]c	chr14:100705155-100705451(+)$1	296	27	40	27.2352
:::eeeee$$$$$	chr2:97535520-97535792(-)$1	272	63	76	22.8235
eee[bb[bb"""b	chr7:65338179-65338425(+)$1	246	153	166	29.9803
44ccc]bb]gggg	chr20:361656-361904(+)$1	248	206	219	23.9019
GGGGZZZDDDD}C	chr4:53192-53445(+)$1	253	218	231	19.0000
AZZZEEEEECCC}	chr10:98346569-98346856(-)$1	287	188	201	29.9803
GGeeeee[ccc[d	chr3:41241024-41241262(+)$1	238	28	41	22.0392
qqqccc333ccc]	chr6:34664379-34664664(-)$1	285	29	42	26.6470
]dddd]dddd]ff	chr14:50360162-50360445(+)$1	283	218	231	27.5294
$$$$$eeeee[a[	chr14:53258064-53258362(-)$1	298	29	42	19.9803
accc!!ccc[eee	chr16:730440-730711(+)$1	271	211	224	20.1764
::::::::hhhhh	chr17:43225892-43226156(+)$1	264	50	63	23.9999
44ccc22eeeeeh	chr19:3062263-3062521(-)$1	258	197	210	29.9803
FFFFFBB{EEEEE	chr3:17783869-17784117(-)$1	248	92	105	20.6666
Ciiiiiiiiinnn	chr19:1249810-1250086(+)$1	276	5	18	28.0196
ffffff[dddd!!	chr19:3506246-3506574(+)$1	328	116	129	22.8235
E:ffffff[ccc[	chr16:75498330-75498611(-)$1	281	44	57	20.6666
C{EEEEELLLGGG	chr1:116915759-116916046(+)$1	287	91	104	19.0980
[bbmmmmbb]ddd	chr17:46125640-46125927(+)$1	287	110	123	24.9803
JJJJJJJJJJJ{B	chr1:87380370-87380636(+)$1	266	115	128	23.9019
iiiiiiiccc[ee	chrX:54835511-54835757(+)$1	246	38	51	20.1764
nnnccc]ccc:GG	chr9:140445562-140445825(+)$1	263	73	86	20.1764
:::::a[ddddmm	chr7:158459765-158460126(-)$1	361	55	68	21.9411
KKJJJJJJJJJJJ	chr7:97736253-97736541(+)$1	288	6	19	29.9803
%%%%%%eeeeemm	chr19:56166195-56166479(+)$1	284	159	172	21.1568
^^^^^^^ccceee	chr1:153918926-153919191(-)$1	265	41	54	20.5686
mmmbb]bb::a[d	chr19:39138225-39138529(+)$1	304	81	94	22.9215
%a[ffffff[a[c	chr19:56632442-56632729(-)$1	287	196	209	21.5490
d!!ggggggg[dd	chr11:118926679-118926905(-)$1	226	56	69	19.4901
===========[d	chr8:15397783-15398069(+)$1	286	194	207	23.3137
[dddd!!aooooo	chr1:110950106-110950397(-)$1	291	221	234	23.6078
DDDD{DDDDBBBB	chr17:2496901-2497195(+)$1	294	64	77	27.2352
4444dddd:dddd	chr1:1822216-1822576(-)$1	360	101	114	29.9803
mmmmcccJJJJJJ	chr6:149638909-149639174(+)$1	265	118	131	29.9803
&&eeeee[hhhhh	chr14:32546368-32546625(+)$1	257	172	185	29.9803
ggggg[cccccc[	chr15:66679268-66679550(+)$1	282	19	32	22.8235

#DB
((((((.......	chr16:87865843-87866093(-)$1	1	87	100	20.6666
))))..)))))))	chr10:22610264-22610600(+)$1	1	40	53	29.9803
)).))))).))))	chr14:50359733-50359978(+)$1	1	69	82	23.2156
...))..).)).)	chr15:64752858-64753145(+)$1	1	222	235	21.2549
....(((((.(..	chr3:195635566-195635828(-)$1	1	235	248	25.4705
((((..(((....	chr8:145159357-145159696(+)$1	1	264	277	21.6470
..).)))).))))	chr1:167691198-167691472(+)$1	1	152	165	25.4705
((((((((.((.(	chr17:61851567-61851837(+)$1	1	34	47	27.2352
..(((((((...(	chr4:174292038-174292345(+)$1	1	22	35	22.0392
(..(((((...((	chr14:77924354-77924698(+)$1	1	33	46	21.0588
((((((.(.((.(	chr4:2936006-2936281(-)$1	1	78	91	20.9607
..))).))(((.(	chr20:34252580-34252828(-)$1	1	25	38	19.8823
((.((.((.((((	chr2:62932862-62933155(+)$1	1	235	248	27.2352
(.((.((((((((	chr3:19988662-19988923(+)$1	1	98	111	27.5294
)))))).)))).)	chr19:2236081-2236355(-)$1	1	55	68	20.9607
((.((....)).)	chr14:100705155-100705451(+)$1	1	27	40	27.2352
...(((((.....	chr2:97535520-97535792(-)$1	1	63	76	22.8235
(((.((.((...(	chr7:65338179-65338425(+)$1	1	153	166	29.9803
..))).)).))))	chr20:361656-361904(+)$1	1	206	219	23.9019
))))...)))).)	chr4:53192-53445(+)$1	1	218	231	19.0000
)...)))))))).	chr10:98346569-98346856(-)$1	1	188	201	29.9803
(((((((.(((.(	chr3:41241024-41241262(+)$1	1	28	41	22.0392
...)))...))).	chr6:34664379-34664664(-)$1	1	29	42	26.6470
.)))).)))).))	chr14:50360162-50360445(+)$1	1	218	231	27.5294
.....(((((.(.	chr14:53258064-53258362(-)$1	1	29	42	19.9803
((((..(((.(((	chr16:730440-730711(+)$1	1	211	224	20.1764
........(((((	chr17:43225892-43226156(+)$1	1	50	63	23.9999
..)))..))))))	chr19:3062263-3062521(-)$1	1	197	210	29.9803
(((((((.(((((	chr3:17783869-17784117(-)$1	1	92	105	20.6666
((((((((((...	chr19:1249810-1250086(+)$1	1	5	18	28.0196
((((((.((((..	chr19:3506246-3506574(+)$1	1	116	129	22.8235
(.((((((.(((.	chr16:75498330-75498611(-)$1	1	44	57	20.6666
(.(((((...(((	chr1:116915759-116916046(+)$1	1	91	104	19.0980
.((....)).)))	chr17:46125640-46125927(+)$1	1	110	123	24.9803
(((((((((((.(	chr1:87380370-87380636(+)$1	1	115	128	23.9019
)))))))(((.((	chrX:54835511-54835757(+)$1	1	38	51	20.1764
...))).))).((	chr9:140445562-140445825(+)$1	1	73	86	20.1764
.....(.((((..	chr7:158459765-158460126(-)$1	1	55	68	21.9411
..(((((((((((	chr7:97736253-97736541(+)$1	1	6	19	29.9803
......(((((..	chr19:56166195-56166479(+)$1	1	159	172	21.1568
.......))))))	chr1:153918926-153919191(-)$1	1	41	54	20.5686
...)).))..(.(	chr19:39138225-39138529(+)$1	1	81	94	22.9215
.(.((((((.(.(	chr19:56632442-56632729(-)$1	1	196	209	21.5490
(..(((((((.((	chr11:118926679-118926905(-)$1	1	56	69	19.4901
(((((((((((.(	chr8:15397783-15398069(+)$1	1	194	207	23.3137
.((((..(.....	chr1:110950106-110950397(-)$1	1	221	234	23.6078
((((.((((((((	chr17:2496901-2497195(+)$1	1	64	77	27.2352
....)))).((((	chr1:1822216-1822576(-)$1	1	101	114	29.9803
....)))((((((	chr6:149638909-149639174(+)$1	1	118	131	29.9803
..(((((.(((((	chr14:32546368-32546625(+)$1	1	172	185	29.9803
(((((.((((((.	chr15:66679268-66679550(+)$1	1	19	32	22.8235

#PSSM
G : 0.60	g : 0.35	C : 0.01	A : 0.01	
A : 0.39	a : 0.25	C : 0.13	G : 0.07	u : 0.05	U : 0.03	g : 0.01	c : 0.01	
G : 0.54	g : 0.37	A : 0.03	C : 0.01	a : 0.01	
G : 0.56	g : 0.41	U : 0.01	
C : 0.33	c : 0.27	G : 0.15	U : 0.07	g : 0.05	a : 0.05	u : 0.01	A : 0.01	
G : 0.47	g : 0.37	C : 0.05	U : 0.03	c : 0.01	u : 0.01	A : 0.01	
G : 0.50	g : 0.43	C : 0.03	A : 0.01	
C : 0.43	c : 0.35	U : 0.05	A : 0.05	a : 0.05	g : 0.01	G : 0.01	
G : 0.52	g : 0.43	A : 0.01	C : 0.01	
G : 0.52	g : 0.41	A : 0.01	C : 0.01	c : 0.01	
C : 0.43	c : 0.37	A : 0.09	G : 0.03	a : 0.03	g : 0.01	
G : 0.47	g : 0.39	U : 0.05	A : 0.01	c : 0.01	C : 0.01	u : 0.01	
G : 0.50	g : 0.43	C : 0.03	U : 0.01	

#score	1222.9215686274501
#seq	51
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_transcript_m1_run1.nuc.txt

#NT
gugggggccug	chr2:132041434-132041672(+)$1	238	104	115	13.0000
GUGGUGGUCUG	chr16:28841029-28841298(+)$1	269	123	134	12.7368
auguguguaug	chr20:45886224-45886514(-)$1	290	181	192	16.1578
GUGAGGAUCUG	chr19:34881015-34881244(+)$1	229	79	90	12.9122
AUCUGGGUCUG	chr19:34882503-34882709(+)$1	206	70	81	21.5964
AUCUGGGUCUG	chr19:34882892-34883102(+)$1	210	79	90	21.5964
AUCUGGGUCUG	chr19:34882814-34883021(+)$1	207	10	21	21.5964
CUCUGGGUCUG	chr19:34881293-34881514(+)$1	221	34	45	19.5789
AUCUGGGUCUG	chr19:34883433-34883665(+)$1	232	38	49	21.5964
AUCUGGGUCUG	chr19:34882844-34883050(+)$1	206	127	138	21.5964
CCUUGGGUCUG	chr19:34883613-34883844(+)$1	231	8	19	14.1403
auguggguauu	chr16:88995736-88996013(-)$1	277	24	35	16.0701
AUGGGGUUCUG	chr11:34080086-34080372(+)$1	286	123	134	14.4035
AUGAGGAUCUG	chr19:34883684-34883914(+)$1	230	31	42	14.2280
AUGUGGGUGUC	chrX:13347615-13347831(+)$1	216	98	109	15.3684
GGAUGGGUCUG	chr19:34873567-34873794(+)$1	227	102	113	15.1052
gugugugugug	chr16:30760300-30760548(+)$1	248	225	236	14.6666
GGGUGGGCCUG	chr11:65191209-65191426(+)$1	217	156	167	13.2631
AGGUGGUUCUG	chr19:34874139-34874364(+)$1	225	101	112	14.6666
AUCUGGGUCUG	chr19:34882617-34882831(+)$1	214	157	168	21.5964
AUCUGGGUCUG	chr19:34882850-34883058(+)$1	208	121	132	21.5964
GUUUGGUUCUG	chr2:10927207-10927474(-)$1	267	108	119	14.7543
GCCUGGGUCUG	chr19:34875185-34875432(+)$1	247	6	17	16.3333
GGGUGGGCCUG	chr11:65191264-65191469(+)$1	205	101	112	13.2631
AAGUGGGUCUU	chr16:89975240-89975560(+)$1	320	111	122	14.6666
AUCUGGGUCUG	chr19:34882495-34882702(+)$1	207	78	89	21.5964
augugugugug	chr22:49974243-49974470(-)$1	227	80	91	15.9824
CUGUGGGUAUU	chr16:88996149-88996388(-)$1	239	39	50	14.0526
uuguguguaug	chr20:45885893-45886141(-)$1	248	28	39	13.6140
CUGUGGGUAUU	chr16:88996266-88996507(-)$1	241	14	25	14.0526
CUGUGGGUAUU	chr16:88995858-88996137(-)$1	279	4	15	14.0526
AUCAGGGUCUG	chr19:34874494-34874776(+)$1	282	43	54	17.4736
GUGUGGGUCUG	chr2:97559832-97560077(-)$1	245	17	28	21.1578
AUGUUGCUCUG	chr11:65193752-65193969(+)$1	217	140	151	14.0526
AGGUGGGUGUG	chr11:65194174-65194391(+)$1	217	90	101	15.8070
ACCUGGGUCUG	chr19:34885261-34885510(+)$1	249	119	130	17.6491
gugugggugug	chr22:49974000-49974249(-)$1	249	235	246	18.2631
AUGUAGGUAUG	chr19:34876287-34876513(+)$1	226	61	72	15.1929
AUCUGGGUCUG	chr19:34882067-34882286(+)$1	219	104	115	21.5964
AUGUUGCUCUG	chr11:65193769-65194006(+)$1	237	123	134	14.0526
AUAUGGGUCUU	chr19:34881632-34881849(+)$1	217	41	52	16.5087
GUGUGUGUAUG	chr6:7139420-7139688(+)$1	268	91	102	14.8421
UUCUGUGUCUG	chrX:152957477-152957728(+)$1	251	49	60	15.4561
CUCUGGGUCUG	chr19:34881126-34881354(+)$1	228	201	212	19.5789
GUAUGGGUGUG	chr14:31344783-31345018(+)$1	235	98	109	15.9824
CUGUGGCUUUG	chr11:65202543-65202789(+)$1	246	0	11	13.0000
GUGUGUGUAUG	chr6:7139488-7139761(+)$1	273	23	34	14.8421
AUCUGGGUCUG	chr19:34882655-34882864(+)$1	209	119	130	21.5964
AUGUGUGUGUG	chr7:112108980-112109273(+)$1	293	255	266	15.9824
AUCUGGGUCUG	chr19:34883556-34883813(+)$1	257	15	26	21.5964
AUCUGGGUCUG	chr19:34882821-34883027(+)$1	206	3	14	21.5964
augugggucug	chr2:97559877-97560184(-)$1	307	2	13	22.4736
AUCUGGGUCUG	chr19:34882902-34883118(+)$1	216	69	80	21.5964
gugggggccug	chr2:132041376-132041634(+)$1	258	162	173	13.0000
CUCUGGGGCUG	chr17:76111217-76111463(-)$1	246	1	12	15.2807
guuuggggcug	chr10:11921070-11921339(-)$1	269	107	118	14.4912

#otherMatches

#Struct PSSM
JJJJJJJJJJJ	chr19:34881896-34882138(+)$1	242	26	37	16.5087
meeeeeccc[e	chr2:132041434-132041672(+)$1	238	104	115	13.0000
JJJJJJJJJJJ	chr16:28841029-28841298(+)$1	269	123	134	12.7368
dd[ggggggg[	chr20:45886224-45886514(-)$1	290	181	192	16.1578
dd[ccc[ccc[	chr19:34881015-34881244(+)$1	229	79	90	12.9122
==========:	chr19:34882503-34882709(+)$1	206	70	81	21.5964
ffff"""ccc[	chr19:34882892-34883102(+)$1	210	79	90	21.5964
=========="	chr19:34882814-34883021(+)$1	207	10	21	21.5964
hhhhh!!cccb	chr19:34881293-34881514(+)$1	221	34	45	19.5789
dddd"""ccc[	chr19:34883433-34883665(+)$1	232	38	49	21.5964
ffff"""ccc[	chr19:34882844-34883050(+)$1	206	127	138	21.5964
ffff"""ccc[	chr19:34883613-34883844(+)$1	231	8	19	14.1403
g[bbttttttt	chr16:88995736-88996013(-)$1	277	24	35	16.0701
KFFFFFFEEEE	chr11:34080086-34080372(+)$1	286	123	134	14.4035
cc22ffffffd	chr19:34883684-34883914(+)$1	230	31	42	14.2280
!bb[ffffff[	chrX:13347615-13347831(+)$1	216	98	109	15.3684
ffffffffff[	chr19:34873567-34873794(+)$1	227	102	113	15.1052
:::::::::::	chr16:30760300-30760548(+)$1	248	225	236	14.6666
CCC}FFFFFF~	chr11:65191209-65191426(+)$1	217	156	167	13.2631
"""ggggggg[	chr19:34874139-34874364(+)$1	225	101	112	14.6666
ffff::CCCDD	chr19:34882617-34882831(+)$1	214	157	168	21.5964
ffff"""ccc[	chr19:34882850-34883058(+)$1	208	121	132	21.5964
===ddddcccc	chr2:10927207-10927474(-)$1	267	108	119	14.7543
::bb[eeeeeb	chr19:34875185-34875432(+)$1	247	6	17	16.3333
CCC}FFFFFF~	chr11:65191264-65191469(+)$1	205	101	112	13.2631
22hhhhhhhhe	chr16:89975240-89975560(+)$1	320	111	122	14.6666
==========:	chr19:34882495-34882702(+)$1	207	78	89	21.5964
eeeee777777	chr22:49974243-49974470(-)$1	227	80	91	15.9824
eeee[ffffff	chr16:88996149-88996388(-)$1	239	39	50	14.0526
%%%%%%dddd[	chr20:45885893-45886141(-)$1	248	28	39	13.6140
eeee[ffffff	chr16:88996266-88996507(-)$1	241	14	25	14.0526
ffff[ffffff	chr16:88995858-88996137(-)$1	279	4	15	14.0526
eee[ccc[bbm	chr19:34874494-34874776(+)$1	282	43	54	17.4736
RRBB{FFFFFF	chr2:97559832-97560077(-)$1	245	17	28	21.1578
dllldddd22d	chr11:65193752-65193969(+)$1	217	140	151	14.0526
::::ffffff"	chr11:65194174-65194391(+)$1	217	90	101	15.8070
ffffffffffd	chr19:34885261-34885510(+)$1	249	119	130	17.6491
:::::::::::	chr22:49974000-49974249(-)$1	249	235	246	18.2631
ddmmmmdddd]	chr19:34876287-34876513(+)$1	226	61	72	15.1929
!!hhhhhhhh!	chr19:34882067-34882286(+)$1	219	104	115	21.5964
dllldddd22d	chr11:65193769-65194006(+)$1	237	123	134	14.0526
hhhhhhnnnnn	chr19:34881632-34881849(+)$1	217	41	52	16.5087
e[eeeeemmmm	chr6:7139420-7139688(+)$1	268	91	102	14.8421
eeeeooooooe	chrX:152957477-152957728(+)$1	251	49	60	15.4561
accc]eeeeeb	chr19:34881126-34881354(+)$1	228	201	212	19.5789
a::FFFFFF{D	chr14:31344783-31345018(+)$1	235	98	109	15.9824
::HHHHHHHHM	chr11:65202543-65202789(+)$1	246	0	11	13.0000
[ccc[a)))))	chr6:7139488-7139761(+)$1	273	23	34	14.8421
JJJJJJJJJJ{	chr19:34882655-34882864(+)$1	209	119	130	21.5964
::::::::bb!	chr7:112108980-112109273(+)$1	293	255	266	15.9824
=========="	chr19:34883556-34883813(+)$1	257	15	26	21.5964
=========="	chr19:34882821-34883027(+)$1	206	3	14	21.5964
::DDDDMMMMF	chr2:97559877-97560184(-)$1	307	2	13	22.4736
==========4	chr19:34882902-34883118(+)$1	216	69	80	21.5964
meeeeeccc[e	chr2:132041376-132041634(+)$1	258	162	173	13.0000
:::::GGGGGG	chr17:76111217-76111463(-)$1	246	1	12	15.2807
NNNDDDD{EEE	chr10:11921070-11921339(-)$1	269	107	118	14.4912

#DB
(((((((((((	chr19:34881896-34882138(+)$1	1	26	37	16.5087
.)))))(((.(	chr2:132041434-132041672(+)$1	1	104	115	13.0000
(((((((((((	chr16:28841029-28841298(+)$1	1	123	134	12.7368
((.(((((((.	chr20:45886224-45886514(-)$1	1	181	192	16.1578
((.(((.(((.	chr19:34881015-34881244(+)$1	1	79	90	12.9122
)))))))))).	chr19:34882503-34882709(+)$1	1	70	81	21.5964
((((...(((.	chr19:34882892-34883102(+)$1	1	79	90	21.5964
((((((((((.	chr19:34882814-34883021(+)$1	1	10	21	21.5964
(((((..((((	chr19:34881293-34881514(+)$1	1	34	45	19.5789
((((...(((.	chr19:34883433-34883665(+)$1	1	38	49	21.5964
((((...(((.	chr19:34882844-34883050(+)$1	1	127	138	21.5964
((((...(((.	chr19:34883613-34883844(+)$1	1	8	19	14.1403
(.((.......	chr16:88995736-88996013(-)$1	1	24	35	16.0701
.((((((((((	chr11:34080086-34080372(+)$1	1	123	134	14.4035
))..))))))(	chr19:34883684-34883914(+)$1	1	31	42	14.2280
.((.((((((.	chrX:13347615-13347831(+)$1	1	98	109	15.3684
))))((((((.	chr19:34873567-34873794(+)$1	1	102	113	15.1052
...........	chr16:30760300-30760548(+)$1	1	225	236	14.6666
))).)))))).	chr11:65191209-65191426(+)$1	1	156	167	13.2631
...(((((((.	chr19:34874139-34874364(+)$1	1	101	112	14.6666
))))..)))))	chr19:34882617-34882831(+)$1	1	157	168	21.5964
((((...(((.	chr19:34882850-34883058(+)$1	1	121	132	21.5964
(((((((((((	chr2:10927207-10927474(-)$1	1	108	119	14.7543
..((.((((((	chr19:34875185-34875432(+)$1	1	6	17	16.3333
))).)))))).	chr11:65191264-65191469(+)$1	1	101	112	13.2631
..))))))))(	chr16:89975240-89975560(+)$1	1	111	122	14.6666
)))))))))).	chr19:34882495-34882702(+)$1	1	78	89	21.5964
)))))......	chr22:49974243-49974470(-)$1	1	80	91	15.9824
((((.((((((	chr16:88996149-88996388(-)$1	1	39	50	14.0526
......((((.	chr20:45885893-45886141(-)$1	1	28	39	13.6140
((((.((((((	chr16:88996266-88996507(-)$1	1	14	25	14.0526
((((.((((((	chr16:88995858-88996137(-)$1	1	4	15	14.0526
(((.(((.((.	chr19:34874494-34874776(+)$1	1	43	54	17.4736
..((.((((((	chr2:97559832-97560077(-)$1	1	17	28	21.1578
(...))))..)	chr11:65193752-65193969(+)$1	1	140	151	14.0526
....((((((.	chr11:65194174-65194391(+)$1	1	90	101	15.8070
)))))))))))	chr19:34885261-34885510(+)$1	1	119	130	17.6491
...........	chr22:49974000-49974249(-)$1	1	235	246	18.2631
((....)))).	chr19:34876287-34876513(+)$1	1	61	72	15.1929
..((((((((.	chr19:34882067-34882286(+)$1	1	104	115	21.5964
(...))))..)	chr11:65193769-65194006(+)$1	1	123	134	14.0526
((((((.....	chr19:34881632-34881849(+)$1	1	41	52	16.5087
(.(((((....	chr6:7139420-7139688(+)$1	1	91	102	14.8421
((((......)	chrX:152957477-152957728(+)$1	1	49	60	15.4561
)))).))))))	chr19:34881126-34881354(+)$1	1	201	212	19.5789
)..((((((.(	chr14:31344783-31345018(+)$1	1	98	109	15.9824
..((((((((.	chr11:65202543-65202789(+)$1	1	0	11	13.0000
.(((.(.....	chr6:7139488-7139761(+)$1	1	23	34	14.8421
((((((((((.	chr19:34882655-34882864(+)$1	1	119	130	21.5964
........((.	chr7:112108980-112109273(+)$1	1	255	266	15.9824
((((((((((.	chr19:34883556-34883813(+)$1	1	15	26	21.5964
((((((((((.	chr19:34882821-34883027(+)$1	1	3	14	21.5964
..((((....(	chr2:97559877-97560184(-)$1	1	2	13	22.4736
)))))))))).	chr19:34882902-34883118(+)$1	1	69	80	21.5964
.)))))(((.(	chr2:132041376-132041634(+)$1	1	162	173	13.0000
.....((((((	chr17:76111217-76111463(-)$1	1	1	12	15.2807
...((((.(((	chr10:11921070-11921339(-)$1	1	107	118	14.4912

#PSSM
A : 0.47	G : 0.19	C : 0.14	g : 0.08	a : 0.07	u : 0.01	U : 0.01	
U : 0.66	u : 0.17	G : 0.08	C : 0.05	A : 0.01	
G : 0.36	C : 0.35	g : 0.15	A : 0.07	U : 0.03	u : 0.01	
U : 0.73	u : 0.14	A : 0.05	g : 0.03	G : 0.03	
G : 0.75	g : 0.17	U : 0.05	A : 0.01	
G : 0.75	g : 0.10	u : 0.07	U : 0.07	
G : 0.68	g : 0.17	U : 0.05	C : 0.05	A : 0.03	
U : 0.77	u : 0.12	c : 0.03	C : 0.03	G : 0.01	g : 0.01	
C : 0.63	A : 0.10	c : 0.07	G : 0.07	a : 0.05	g : 0.05	U : 0.01	
U : 0.82	u : 0.17	
G : 0.70	g : 0.15	U : 0.10	u : 0.01	C : 0.01	

#score	959.42105263158
#seq	57
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_transcript_m2_run2.nuc.txt

#NT
GGAGAGG	chrX:132683108-132683350(-)$1	242	52	59	13.4285
GGAGAGA	chr19:56148894-56149161(+)$1	267	44	51	17.1428
gcagaga	chr2:128615005-128615326(-)$1	321	251	258	13.4285
GGAGAGG	chr19:34874131-34874379(+)$1	248	59	66	13.4285
GCAGAGA	chr19:35536372-35536642(+)$1	270	86	93	13.4285
GGACAGA	chr20:48285102-48285401(-)$1	299	115	122	12.7142
GGAGUGA	chr2:240230393-240230654(-)$1	261	185	192	13.4999
GGAGAGG	chr14:39737919-39738180(+)$1	261	22	29	13.4285
GGAGAGG	chr2:54853616-54853899(+)$1	283	118	125	13.4285
GGAGUGA	chr11:70961340-70961619(-)$1	279	3	10	13.4999
GGGGAGA	chr2:65645419-65645667(-)$1	248	28	35	12.9285
ggagaga	chr21:16401275-16401532(-)$1	257	94	101	17.1428
GGAGAGU	chr16:31198432-31198683(+)$1	251	32	39	13.3571
GGACAGA	chr2:207022005-207022290(-)$1	285	65	72	12.7142
ggagaga	chr22:31657803-31658056(+)$1	253	67	74	17.1428
GGAGGGA	chr2:219647324-219647594(+)$1	270	111	118	13.1428
ggAGAAA	chr8:119048894-119049205(-)$1	311	153	160	13.1428
GAAGAGA	chr2:216277450-216277690(-)$1	240	115	122	13.4285
ggagaga	chr17:45027640-45027916(+)$1	276	95	102	17.1428
GUAGAGA	chr6:168338863-168339130(+)$1	267	39	46	13.2857
ggggaga	chr17:55523415-55523702(+)$1	287	275	282	12.9285
ggagagg	chr2:11730922-11731175(+)$1	253	64	71	13.4285
ggggaga	chr6:86352557-86352823(-)$1	266	14	21	12.9285
ggacaga	chr1:230848699-230848971(-)$1	272	51	58	12.7142
ggagaga	chr6:119651285-119651572(-)$1	287	87	94	17.1428
GAAGAGA	chr6:1865154-1865434(-)$1	280	113	120	13.4285
GUAGAGA	chr19:50358955-50359213(+)$1	258	15	22	13.2857
GUAGAGA	chr2:88354455-88354742(-)$1	287	21	28	13.2857
GGAGAGA	chr22:50831872-50832192(+)$1	320	5	12	17.1428
ggaguga	chr17:75481416-75481717(+)$1	301	125	132	13.4999
GGAGUGA	chr19:6708914-6709178(-)$1	264	120	127	13.4999
GGAGAGA	chr14:55073724-55074032(+)$1	308	53	60	17.1428
GGAGAGG	chr6:7127685-7127938(+)$1	253	101	108	13.4285
GGAGAGA	chr10:34887806-34888157(-)$1	351	128	135	17.1428
GGAGAAA	chr9:4733617-4733880(-)$1	263	137	144	13.1428
ggagaaa	chr16:81486065-81486333(+)$1	268	65	72	13.1428
GGAGAGA	chr17:75454800-75455054(+)$1	254	211	218	17.1428
GGAGAGA	chr7:47612753-47613073(-)$1	320	144	151	17.1428
GGAGAGA	chrX:131610403-131610689(-)$1	286	163	170	17.1428
GGAGAGU	chr16:31198264-31198550(+)$1	286	200	207	13.3571
ggagaga	chr2:63125757-63126062(+)$1	305	122	129	17.1428
GGAGAGA	chr11:124804754-124805056(-)$1	302	210	217	17.1428
GGACAGA	chr8:123937958-123938248(+)$1	290	149	156	12.7142
gcagaga	chr20:30255841-30256107(-)$1	266	15	22	13.4285
GGAGUGA	chr16:23490344-23490626(-)$1	282	14	21	13.4999
ggagagu	chr22:19930246-19930520(+)$1	274	64	71	13.3571
ggagaga	chrX:131545511-131545817(-)$1	306	110	117	17.1428
GGCGAGA	chr20:34223350-34223676(-)$1	326	290	297	12.7142
GGAGAGA	chr6:144648220-144648477(+)$1	257	186	193	17.1428
GAAGAGA	chr2:10335343-10335600(+)$1	257	20	27	13.4285
GGAGAAA	chr1:43406492-43406749(-)$1	257	242	249	13.1428
GGAGAGU	chr4:184086212-184086476(+)$1	264	225	232	13.3571
GGAGAAA	chr6:31368520-31368805(+)$1	285	52	59	13.1428
ggaguga	chr17:14298771-14299039(+)$1	268	24	31	13.4999
GGAGAGC	chr2:54798197-54798457(+)$1	260	77	84	13.0714
GGAGUGA	chr1:8070494-8070767(-)$1	273	111	118	13.4999
GGGGAGA	chr11:65194740-65194955(+)$1	215	86	93	12.9285
GCAGAGA	chr20:45911622-45911886(-)$1	264	45	52	13.4285
GGAGAAA	chr16:31199206-31199419(+)$1	213	21	28	13.1428
ggugaga	chr2:235892272-235892572(+)$1	300	12	19	12.7857
GAAGAGA	chr8:17845466-17845782(+)$1	316	65	72	13.4285
ggagaga	chr2:11729534-11729785(+)$1	251	2	9	17.1428
GGAGGGA	chr7:47512186-47512437(-)$1	251	110	117	13.1428
GCAGAGA	chr1:169089286-169089546(+)$1	260	85	92	13.4285
GAAGAGA	chr2:54776891-54777143(+)$1	252	134	141	13.4285
GGAGAGU	chr6:155583430-155583744(-)$1	314	174	181	13.3571
ggagaaa	chr6:142757379-142757640(+)$1	261	86	93	13.1428
GGAGGGA	chr3:176892365-176892678(-)$1	313	101	108	13.1428
GGAGUGA	chr2:65646342-65646629(-)$1	287	223	230	13.4999

#otherMatches

#Struct PSSM
sssssss	chr4:152181765-152182003(-)$1	238	51	58	12.7857
!eeeeeo	chrX:132683108-132683350(-)$1	242	52	59	13.4285
GGGGGKK	chr19:56148894-56149161(+)$1	267	44	51	17.1428
}BB}A\\	chr2:128615005-128615326(-)$1	321	251	258	13.4285
dddda[e	chr19:34874131-34874379(+)$1	248	59	66	13.4285
GGGGKKC	chr19:35536372-35536642(+)$1	270	86	93	13.4285
HHH::==	chr20:48285102-48285401(-)$1	299	115	122	12.7142
e!!bb[e	chr2:240230393-240230654(-)$1	261	185	192	13.4999
:::::::	chr14:39737919-39738180(+)$1	261	22	29	13.4285
444====	chr2:54853616-54853899(+)$1	283	118	125	13.4285
HHHHH{B	chr11:70961340-70961619(-)$1	279	3	10	13.4999
ffff[cc	chr2:65645419-65645667(-)$1	248	28	35	12.9285
iii$$$$	chr21:16401275-16401532(-)$1	257	94	101	17.1428
vvvvvcc	chr16:31198432-31198683(+)$1	251	32	39	13.3571
9gggggg	chr2:207022005-207022290(-)$1	285	65	72	12.7142
EEOOOOO	chr22:31657803-31658056(+)$1	253	67	74	17.1428
0000bb]	chr2:219647324-219647594(+)$1	270	111	118	13.1428
!!bb[dd	chr8:119048894-119049205(-)$1	311	153	160	13.1428
b22ccc:	chr2:216277450-216277690(-)$1	240	115	122	13.4285
cc[bb[c	chr17:45027640-45027916(+)$1	276	95	102	17.1428
xxxxxxx	chr6:168338863-168339130(+)$1	267	39	46	13.2857
GGGG:::	chr17:55523415-55523702(+)$1	287	275	282	12.9285
9999999	chr2:11730922-11731175(+)$1	253	64	71	13.4285
BA{CCCN	chr6:86352557-86352823(-)$1	266	14	21	12.9285
sssssss	chr1:230848699-230848971(-)$1	272	51	58	12.7142
=====44	chr6:119651285-119651572(-)$1	287	87	94	17.1428
xxxxxxx	chr6:1865154-1865434(-)$1	280	113	120	13.4285
:ffffff	chr19:50358955-50359213(+)$1	258	15	22	13.2857
CC{HHHH	chr2:88354455-88354742(-)$1	287	21	28	13.2857
FFFFLLL	chr22:50831872-50832192(+)$1	320	5	12	17.1428
CCCMMMM	chr17:75481416-75481717(+)$1	301	125	132	13.4999
dd[eeee	chr19:6708914-6709178(-)$1	264	120	127	13.4999
dd88888	chr14:55073724-55074032(+)$1	308	53	60	17.1428
cqqqqqq	chr6:7127685-7127938(+)$1	253	101	108	13.4285
#bb!!cc	chr10:34887806-34888157(-)$1	351	128	135	17.1428
bb00000	chr9:4733617-4733880(-)$1	263	137	144	13.1428
qqqqqqq	chr16:81486065-81486333(+)$1	268	65	72	13.1428
eeDDDD}	chr17:75454800-75455054(+)$1	254	211	218	17.1428
c[cccll	chr7:47612753-47613073(-)$1	320	144	151	17.1428
FFFFbbo	chrX:131610403-131610689(-)$1	286	163	170	17.1428
FFFF}CC	chr16:31198264-31198550(+)$1	286	200	207	13.3571
hh333dd	chr2:63125757-63126062(+)$1	305	122	129	17.1428
hh:::::	chr11:124804754-124805056(-)$1	302	210	217	17.1428
:::::::	chr8:123937958-123938248(+)$1	290	149	156	12.7142
bb$$$$$	chr20:30255841-30256107(-)$1	266	15	22	13.4285
KKADDDD	chr16:23490344-23490626(-)$1	282	14	21	13.4999
::::::E	chr22:19930246-19930520(+)$1	274	64	71	13.3571
BSSSSSS	chrX:131545511-131545817(-)$1	306	110	117	17.1428
ddd]bb]	chr20:34223350-34223676(-)$1	326	290	297	12.7142
bb####c	chr6:144648220-144648477(+)$1	257	186	193	17.1428
++hhhhh	chr2:10335343-10335600(+)$1	257	20	27	13.4285
E||||||	chr1:43406492-43406749(-)$1	257	242	249	13.1428
E}CCC}A	chr4:184086212-184086476(+)$1	264	225	232	13.3571
FFFFSSS	chr6:31368520-31368805(+)$1	285	52	59	13.1428
:::eeee	chr17:14298771-14299039(+)$1	268	24	31	13.4999
DKKCCCB	chr2:54798197-54798457(+)$1	260	77	84	13.0714
d%%%%%%	chr1:8070494-8070767(-)$1	273	111	118	13.4999
ccc]ddd	chr11:65194740-65194955(+)$1	215	86	93	12.9285
eeeee::	chr20:45911622-45911886(-)$1	264	45	52	13.4285
CC{EEEE	chr16:31199206-31199419(+)$1	213	21	28	13.1428
iiiiiii	chr2:235892272-235892572(+)$1	300	12	19	12.7857
]gggggg	chr8:17845466-17845782(+)$1	316	65	72	13.4285
bb[bb!!	chr2:11729534-11729785(+)$1	251	2	9	17.1428
ppppfff	chr7:47512186-47512437(-)$1	251	110	117	13.1428
ee>>>>>	chr1:169089286-169089546(+)$1	260	85	92	13.4285
bb!!eee	chr2:54776891-54777143(+)$1	252	134	141	13.4285
yyyyydd	chr6:155583430-155583744(-)$1	314	174	181	13.3571
ee]bb::	chr6:142757379-142757640(+)$1	261	86	93	13.1428
FFFFFLL	chr3:176892365-176892678(-)$1	313	101	108	13.1428
gggnnnn	chr2:65646342-65646629(-)$1	287	223	230	13.4999

#DB
.......	chr4:152181765-152182003(-)$1	1	51	58	12.7857
.(((((.	chrX:132683108-132683350(-)$1	1	52	59	13.4285
(((((..	chr19:56148894-56149161(+)$1	1	44	51	17.1428
.)).)..	chr2:128615005-128615326(-)$1	1	251	258	13.4285
(((((.(	chr19:34874131-34874379(+)$1	1	59	66	13.4285
((((..(	chr19:35536372-35536642(+)$1	1	86	93	13.4285
(((..((	chr20:48285102-48285401(-)$1	1	115	122	12.7142
(..((.(	chr2:240230393-240230654(-)$1	1	185	192	13.4999
.......	chr14:39737919-39738180(+)$1	1	22	29	13.4285
...))))	chr2:54853616-54853899(+)$1	1	118	125	13.4285
(((((.(	chr11:70961340-70961619(-)$1	1	3	10	13.4999
((((.((	chr2:65645419-65645667(-)$1	1	28	35	12.9285
(((....	chr21:16401275-16401532(-)$1	1	94	101	17.1428
.....))	chr16:31198432-31198683(+)$1	1	32	39	13.3571
.))))))	chr2:207022005-207022290(-)$1	1	65	72	12.7142
((.....	chr22:31657803-31658056(+)$1	1	67	74	17.1428
....)).	chr2:219647324-219647594(+)$1	1	111	118	13.1428
..((.((	chr8:119048894-119049205(-)$1	1	153	160	13.1428
)..))).	chr2:216277450-216277690(-)$1	1	115	122	13.4285
((.((.(	chr17:45027640-45027916(+)$1	1	95	102	17.1428
.......	chr6:168338863-168339130(+)$1	1	39	46	13.2857
))))...	chr17:55523415-55523702(+)$1	1	275	282	12.9285
.......	chr2:11730922-11731175(+)$1	1	64	71	13.4285
((.(((.	chr6:86352557-86352823(-)$1	1	14	21	12.9285
.......	chr1:230848699-230848971(-)$1	1	51	58	12.7142
)))))..	chr6:119651285-119651572(-)$1	1	87	94	17.1428
.......	chr6:1865154-1865434(-)$1	1	113	120	13.4285
.((((((	chr19:50358955-50359213(+)$1	1	15	22	13.2857
((.((((	chr2:88354455-88354742(-)$1	1	21	28	13.2857
((((...	chr22:50831872-50832192(+)$1	1	5	12	17.1428
(((....	chr17:75481416-75481717(+)$1	1	125	132	13.4999
((.((((	chr19:6708914-6709178(-)$1	1	120	127	13.4999
)).....	chr14:55073724-55074032(+)$1	1	53	60	17.1428
(......	chr6:7127685-7127938(+)$1	1	101	108	13.4285
.((..((	chr10:34887806-34888157(-)$1	1	128	135	17.1428
)).....	chr9:4733617-4733880(-)$1	1	137	144	13.1428
.......	chr16:81486065-81486333(+)$1	1	65	72	13.1428
)))))).	chr17:75454800-75455054(+)$1	1	211	218	17.1428
(.(((..	chr7:47612753-47613073(-)$1	1	144	151	17.1428
((((((.	chrX:131610403-131610689(-)$1	1	163	170	17.1428
)))).))	chr16:31198264-31198550(+)$1	1	200	207	13.3571
))...))	chr2:63125757-63126062(+)$1	1	122	129	17.1428
)).....	chr11:124804754-124805056(-)$1	1	210	217	17.1428
.......	chr8:123937958-123938248(+)$1	1	149	156	12.7142
((.....	chr20:30255841-30256107(-)$1	1	15	22	13.4285
..(((((	chr16:23490344-23490626(-)$1	1	14	21	13.4999
......(	chr22:19930246-19930520(+)$1	1	64	71	13.3571
(......	chrX:131545511-131545817(-)$1	1	110	117	17.1428
))).)).	chr20:34223350-34223676(-)$1	1	290	297	12.7142
((....(	chr6:144648220-144648477(+)$1	1	186	193	17.1428
..(((((	chr2:10335343-10335600(+)$1	1	20	27	13.4285
)......	chr1:43406492-43406749(-)$1	1	242	249	13.1428
).))).)	chr4:184086212-184086476(+)$1	1	225	232	13.3571
((((...	chr6:31368520-31368805(+)$1	1	52	59	13.1428
...((((	chr17:14298771-14299039(+)$1	1	24	31	13.4999
(..((((	chr2:54798197-54798457(+)$1	1	77	84	13.0714
(......	chr1:8070494-8070767(-)$1	1	111	118	13.4999
))).)))	chr11:65194740-65194955(+)$1	1	86	93	12.9285
)))))..	chr20:45911622-45911886(-)$1	1	45	52	13.4285
((.((((	chr16:31199206-31199419(+)$1	1	21	28	13.1428
(((((((	chr2:235892272-235892572(+)$1	1	12	19	12.7857
.))))))	chr8:17845466-17845782(+)$1	1	65	72	13.4285
((.((..	chr2:11729534-11729785(+)$1	1	2	9	17.1428
....)))	chr7:47512186-47512437(-)$1	1	110	117	13.1428
)).....	chr1:169089286-169089546(+)$1	1	85	92	13.4285
((..(((	chr2:54776891-54777143(+)$1	1	134	141	13.4285
.....))	chr6:155583430-155583744(-)$1	1	174	181	13.3571
)).))..	chr6:142757379-142757640(+)$1	1	86	93	13.1428
(((((..	chr3:176892365-176892678(-)$1	1	101	108	13.1428
(((....	chr2:65646342-65646629(-)$1	1	223	230	13.4999

#PSSM
G : 0.69	g : 0.30	
G : 0.54	g : 0.27	A : 0.07	C : 0.04	U : 0.04	c : 0.02	
A : 0.67	a : 0.22	u : 0.02	G : 0.02	g : 0.02	C : 0.01	
G : 0.67	g : 0.27	C : 0.04	c : 0.01	
A : 0.58	a : 0.25	U : 0.08	G : 0.04	u : 0.02	
G : 0.64	g : 0.25	A : 0.07	a : 0.02	
A : 0.57	a : 0.25	G : 0.07	U : 0.05	g : 0.01	u : 0.01	C : 0.01	

#score	989.1428571428571
#seq	70
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_UTR_m3_run2.nuc.txt

#NT
gaa	chr20:391066-391415(+)$1	349	46	49	9.0000
GAA	chr10:76855245-76855577(-)$1	332	62	65	9.0000
GAA	chr9:125920534-125920752(-)$1	218	118	121	9.0000
GAA	chr19:49514155-49514380(+)$1	225	51	54	9.0000
GAA	chr2:176046033-176046248(-)$1	215	2	5	9.0000
GAA	chr9:367928-368194(+)$1	266	3	6	9.0000
GAA	chr11:3050461-3050713(-)$1	252	49	52	9.0000
GAA	chr17:79805064-79805279(-)$1	215	62	65	9.0000
GAA	chr17:40993414-40993627(+)$1	213	26	29	9.0000
GAA	chr12:49663547-49663765(+)$1	218	65	68	9.0000
GAA	chr15:44881435-44881685(-)$1	250	35	38	9.0000
GAA	chr12:118583061-118583315(+)$1	254	113	116	9.0000
GAA	chr1:115250408-115250669(-)$1	261	34	37	9.0000
GAA	chr8:86025065-86025339(+)$1	274	55	58	9.0000
GAA	chr12:102120069-102120283(+)$1	214	107	110	9.0000
GAA	chrX:153664568-153664801(+)$1	233	57	60	9.0000
GAA	chr2:176046058-176046264(-)$1	206	18	21	9.0000
GAA	chr7:100483775-100483990(+)$1	215	17	20	9.0000
GAA	chr7:66453169-66453413(-)$1	244	5	8	9.0000
GAA	chr11:118886498-118886721(-)$1	223	120	123	9.0000
GAA	chr1:1336341-1336592(+)$1	251	90	93	9.0000
GAA	chr7:148947230-148947486(+)$1	256	26	29	9.0000
GAA	chr10:51580471-51580694(+)$1	223	10	13	9.0000
GAA	chr3:49135524-49135728(-)$1	204	49	52	9.0000
GAA	chr3:50293571-50293844(+)$1	273	5	8	9.0000
GAA	chr7:105890067-105890309(-)$1	242	44	47	9.0000
GAA	chr6:75947439-75947719(-)$1	280	15	18	9.0000
GAA	chr14:24607157-24607379(+)$1	222	27	30	9.0000
GAA	chr16:81422888-81423146(+)$1	258	72	75	9.0000
GAA	chr2:171823015-171823261(+)$1	246	40	43	9.0000
GAA	chr19:10745771-10746032(+)$1	261	220	223	9.0000
GAA	chr12:56212752-56213058(+)$1	306	33	36	9.0000
GAA	chr2:85808625-85808841(+)$1	216	99	102	9.0000
GAA	chr2:96950075-96950305(-)$1	230	2	5	9.0000
GAA	chr7:23561267-23561483(-)$1	216	55	58	9.0000
GAA	chr17:80202317-80202602(-)$1	285	41	44	9.0000
GAA	chr15:99901472-99901702(+)$1	230	48	51	9.0000
GAA	chr12:113826403-113826632(+)$1	229	26	29	9.0000
gaa	chr19:19516687-19516903(+)$1	216	21	24	9.0000
GAA	chr6:30037324-30037536(+)$1	212	85	88	9.0000
gaa	chr6:4119380-4119594(-)$1	214	9	12	9.0000
GAA	chr1:228681543-228681758(+)$1	215	104	107	9.0000
GAA	chr16:28855920-28856145(-)$1	225	28	31	9.0000
GAA	chr17:61907558-61907785(+)$1	227	50	53	9.0000
GAA	chr12:54745381-54745615(+)$1	234	38	41	9.0000
GAA	chr5:81571944-81572150(-)$1	206	19	22	9.0000
GAA	chr9:35101381-35101611(-)$1	230	54	57	9.0000
GAA	chr18:19203629-19203863(+)$1	234	95	98	9.0000
GAA	chr7:24931981-24932245(-)$1	264	168	171	9.0000
GAA	chr19:49518838-49519043(+)$1	205	67	70	9.0000
GAA	chr8:21939494-21939755(+)$1	261	82	85	9.0000
GAA	chr16:24226558-24226787(+)$1	229	19	22	9.0000
GAA	chr8:28909581-28909792(+)$1	211	73	76	9.0000
GAA	chr10:51590031-51590249(+)$1	218	17	20	9.0000
GAA	chr2:74425678-74425922(+)$1	244	221	224	9.0000
GAA	chr19:39328965-39329180(-)$1	215	21	24	9.0000
GAA	chr12:57108287-57108503(-)$1	216	38	41	9.0000
GAA	chr3:52312150-52312408(-)$1	258	33	36	9.0000
GAA	chr19:46856903-46857254(+)$1	351	14	17	9.0000
GAA	chr18:9861894-9862167(+)$1	273	6	9	9.0000
GAA	chr1:36353925-36354192(+)$1	267	175	178	9.0000
GAA	chr17:38178833-38179068(-)$1	235	9	12	9.0000
GAA	chr14:23415602-23415831(-)$1	229	19	22	9.0000
GAA	chr17:80011643-80011887(+)$1	244	106	109	9.0000
GAA	chrX:129263944-129264198(-)$1	254	57	60	9.0000
GAA	chr16:2124147-2124451(+)$1	304	181	184	9.0000
GAA	chr16:1750130-1750381(+)$1	251	16	19	9.0000
GAA	chr1:19443793-19444008(-)$1	215	16	19	9.0000
GAA	chr19:13058644-13058888(+)$1	244	19	22	9.0000
GAA	chr13:27830472-27830675(+)$1	203	3	6	9.0000
GAA	chr22:30977416-30977644(-)$1	228	126	129	9.0000
GAA	chr17:36478450-36478710(+)$1	260	9	12	9.0000
GAA	chr11:73441709-73441953(-)$1	244	19	22	9.0000
GAA	chr19:46190720-46190924(-)$1	204	8	11	9.0000
GAA	chr11:61557289-61557494(-)$1	205	1	4	9.0000
GAA	chr19:16243686-16244010(+)$1	324	18	21	9.0000
GAA	chr17:41151849-41152051(+)$1	202	13	16	9.0000
GAA	chr13:28009028-28009271(+)$1	243	20	23	9.0000
GAA	chr11:502038-502317(-)$1	279	1	4	9.0000
GAA	chr1:2334706-2334919(+)$1	213	13	16	9.0000
GAA	chr12:111157698-111157915(-)$1	217	18	21	9.0000
GAA	chr12:124922388-124922642(-)$1	254	99	102	9.0000
GAA	chr2:207025211-207025427(+)$1	216	77	80	9.0000
GAA	chr11:68451981-68452188(+)$1	207	193	196	9.0000
GAA	chr16:23848595-23848811(+)$1	216	18	21	9.0000
GAA	chr11:64537766-64537980(-)$1	214	25	28	9.0000
GAA	chr19:33078091-33078352(+)$1	261	8	11	9.0000
GAA	chr19:11729256-11729527(+)$1	271	26	29	9.0000
GAA	chr2:131096320-131096538(-)$1	218	5	8	9.0000
GAA	chr12:113596382-113596589(-)$1	207	38	41	9.0000
GAA	chr8:42940577-42940833(+)$1	256	66	69	9.0000
GAA	chr9:127283849-127284102(-)$1	253	43	46	9.0000
GAA	chr3:186503642-186503856(+)$1	214	2	5	9.0000
GAA	chr16:85839352-85839562(+)$1	210	23	26	9.0000
GAA	chr14:67826274-67826610(-)$1	336	29	32	9.0000
GAA	chrX:153714013-153714271(-)$1	258	23	26	9.0000
GAA	chr3:127771602-127771843(+)$1	241	0	3	9.0000
GAA	chr16:85840434-85840647(+)$1	213	22	25	9.0000
GAA	chr3:52027823-52028035(-)$1	212	105	108	9.0000

#otherMatches

#Struct PSSM
ddd	chr17:57126531-57126811(-)$1	280	79	82	9.0000
cc2	chr20:391066-391415(+)$1	349	46	49	9.0000
dnn	chr10:76855245-76855577(-)$1	332	62	65	9.0000
HHH	chr9:125920534-125920752(-)$1	218	118	121	9.0000
ALL	chr19:49514155-49514380(+)$1	225	51	54	9.0000
c!!	chr2:176046033-176046248(-)$1	215	2	5	9.0000
CC{	chr9:367928-368194(+)$1	266	3	6	9.0000
ddd	chr11:3050461-3050713(-)$1	252	49	52	9.0000
===	chr17:79805064-79805279(-)$1	215	62	65	9.0000
CCG	chr17:40993414-40993627(+)$1	213	26	29	9.0000
ooo	chr12:49663547-49663765(+)$1	218	65	68	9.0000
CCC	chr15:44881435-44881685(-)$1	250	35	38	9.0000
ppp	chr12:118583061-118583315(+)$1	254	113	116	9.0000
F{C	chr1:115250408-115250669(-)$1	261	34	37	9.0000
hhh	chr8:86025065-86025339(+)$1	274	55	58	9.0000
D{E	chr12:102120069-102120283(+)$1	214	107	110	9.0000
dnn	chrX:153664568-153664801(+)$1	233	57	60	9.0000
d!!	chr2:176046058-176046264(-)$1	206	18	21	9.0000
qqq	chr7:100483775-100483990(+)$1	215	17	20	9.0000
E{B	chr7:66453169-66453413(-)$1	244	5	8	9.0000
EYY	chr11:118886498-118886721(-)$1	223	120	123	9.0000
ppp	chr1:1336341-1336592(+)$1	251	90	93	9.0000
:::	chr7:148947230-148947486(+)$1	256	26	29	9.0000
ddd	chr10:51580471-51580694(+)$1	223	10	13	9.0000
:::	chr3:49135524-49135728(-)$1	204	49	52	9.0000
:::	chr3:50293571-50293844(+)$1	273	5	8	9.0000
c]c	chr7:105890067-105890309(-)$1	242	44	47	9.0000
fff	chr6:75947439-75947719(-)$1	280	15	18	9.0000
JJJ	chr14:24607157-24607379(+)$1	222	27	30	9.0000
cc"	chr16:81422888-81423146(+)$1	258	72	75	9.0000
ooo	chr2:171823015-171823261(+)$1	246	40	43	9.0000
DDD	chr19:10745771-10746032(+)$1	261	220	223	9.0000
:::	chr12:56212752-56213058(+)$1	306	33	36	9.0000
iii	chr2:85808625-85808841(+)$1	216	99	102	9.0000
:::	chr2:96950075-96950305(-)$1	230	2	5	9.0000
FFF	chr7:23561267-23561483(-)$1	216	55	58	9.0000
:::	chr17:80202317-80202602(-)$1	285	41	44	9.0000
fff	chr15:99901472-99901702(+)$1	230	48	51	9.0000
bbl	chr12:113826403-113826632(+)$1	229	26	29	9.0000
a22	chr19:19516687-19516903(+)$1	216	21	24	9.0000
c::	chr6:30037324-30037536(+)$1	212	85	88	9.0000
ddd	chr6:4119380-4119594(-)$1	214	9	12	9.0000
FFF	chr1:228681543-228681758(+)$1	215	104	107	9.0000
:::	chr16:28855920-28856145(-)$1	225	28	31	9.0000
c33	chr17:61907558-61907785(+)$1	227	50	53	9.0000
cc:	chr12:54745381-54745615(+)$1	234	38	41	9.0000
ee$	chr5:81571944-81572150(-)$1	206	19	22	9.0000
d[b	chr9:35101381-35101611(-)$1	230	54	57	9.0000
cc3	chr18:19203629-19203863(+)$1	234	95	98	9.0000
ee:	chr7:24931981-24932245(-)$1	264	168	171	9.0000
eee	chr19:49518838-49519043(+)$1	205	67	70	9.0000
fff	chr8:21939494-21939755(+)$1	261	82	85	9.0000
emm	chr16:24226558-24226787(+)$1	229	19	22	9.0000
ooo	chr8:28909581-28909792(+)$1	211	73	76	9.0000
:::	chr10:51590031-51590249(+)$1	218	17	20	9.0000
fff	chr2:74425678-74425922(+)$1	244	221	224	9.0000
LLL	chr19:39328965-39329180(-)$1	215	21	24	9.0000
lll	chr12:57108287-57108503(-)$1	216	38	41	9.0000
b!!	chr3:52312150-52312408(-)$1	258	33	36	9.0000
gge	chr19:46856903-46857254(+)$1	351	14	17	9.0000
HHH	chr18:9861894-9862167(+)$1	273	6	9	9.0000
CCC	chr1:36353925-36354192(+)$1	267	175	178	9.0000
DKK	chr17:38178833-38179068(-)$1	235	9	12	9.0000
dqq	chr14:23415602-23415831(-)$1	229	19	22	9.0000
d33	chr17:80011643-80011887(+)$1	244	106	109	9.0000
eee	chrX:129263944-129264198(-)$1	254	57	60	9.0000
h::	chr16:2124147-2124451(+)$1	304	181	184	9.0000
EE:	chr16:1750130-1750381(+)$1	251	16	19	9.0000
hhh	chr1:19443793-19444008(-)$1	215	16	19	9.0000
bb]	chr19:13058644-13058888(+)$1	244	19	22	9.0000
:::	chr13:27830472-27830675(+)$1	203	3	6	9.0000
bb]	chr22:30977416-30977644(-)$1	228	126	129	9.0000
ooo	chr17:36478450-36478710(+)$1	260	9	12	9.0000
eee	chr11:73441709-73441953(-)$1	244	19	22	9.0000
qqq	chr19:46190720-46190924(-)$1	204	8	11	9.0000
===	chr11:61557289-61557494(-)$1	205	1	4	9.0000
:::	chr19:16243686-16244010(+)$1	324	18	21	9.0000
ddd	chr17:41151849-41152051(+)$1	202	13	16	9.0000
GGG	chr13:28009028-28009271(+)$1	243	20	23	9.0000
:::	chr11:502038-502317(-)$1	279	1	4	9.0000
(((	chr1:2334706-2334919(+)$1	213	13	16	9.0000
GKK	chr12:111157698-111157915(-)$1	217	18	21	9.0000
aqq	chr12:124922388-124922642(-)$1	254	99	102	9.0000
ggg	chr2:207025211-207025427(+)$1	216	77	80	9.0000
cmm	chr11:68451981-68452188(+)$1	207	193	196	9.0000
nnn	chr16:23848595-23848811(+)$1	216	18	21	9.0000
C::	chr11:64537766-64537980(-)$1	214	25	28	9.0000
ffl	chr19:33078091-33078352(+)$1	261	8	11	9.0000
:::	chr19:11729256-11729527(+)$1	271	26	29	9.0000
JJJ	chr2:131096320-131096538(-)$1	218	5	8	9.0000
cqq	chr12:113596382-113596589(-)$1	207	38	41	9.0000
dd"	chr8:42940577-42940833(+)$1	256	66	69	9.0000
iii	chr9:127283849-127284102(-)$1	253	43	46	9.0000
:::	chr3:186503642-186503856(+)$1	214	2	5	9.0000
ppp	chr16:85839352-85839562(+)$1	210	23	26	9.0000
b::	chr14:67826274-67826610(-)$1	336	29	32	9.0000
::C	chrX:153714013-153714271(-)$1	258	23	26	9.0000
EEE	chr3:127771602-127771843(+)$1	241	0	3	9.0000
PPG	chr16:85840434-85840647(+)$1	213	22	25	9.0000
f::	chr3:52027823-52028035(-)$1	212	105	108	9.0000

#DB
)))	chr17:57126531-57126811(-)$1	1	79	82	9.0000
)).	chr20:391066-391415(+)$1	1	46	49	9.0000
(..	chr10:76855245-76855577(-)$1	1	62	65	9.0000
)))	chr9:125920534-125920752(-)$1	1	118	121	9.0000
(..	chr19:49514155-49514380(+)$1	1	51	54	9.0000
(..	chr2:176046033-176046248(-)$1	1	2	5	9.0000
((.	chr9:367928-368194(+)$1	1	3	6	9.0000
(((	chr11:3050461-3050713(-)$1	1	49	52	9.0000
(((	chr17:79805064-79805279(-)$1	1	62	65	9.0000
(((	chr17:40993414-40993627(+)$1	1	26	29	9.0000
...	chr12:49663547-49663765(+)$1	1	65	68	9.0000
(((	chr15:44881435-44881685(-)$1	1	35	38	9.0000
...	chr12:118583061-118583315(+)$1	1	113	116	9.0000
(.(	chr1:115250408-115250669(-)$1	1	34	37	9.0000
)))	chr8:86025065-86025339(+)$1	1	55	58	9.0000
(.(	chr12:102120069-102120283(+)$1	1	107	110	9.0000
(..	chrX:153664568-153664801(+)$1	1	57	60	9.0000
(..	chr2:176046058-176046264(-)$1	1	18	21	9.0000
...	chr7:100483775-100483990(+)$1	1	17	20	9.0000
(.(	chr7:66453169-66453413(-)$1	1	5	8	9.0000
)..	chr11:118886498-118886721(-)$1	1	120	123	9.0000
...	chr1:1336341-1336592(+)$1	1	90	93	9.0000
...	chr7:148947230-148947486(+)$1	1	26	29	9.0000
(((	chr10:51580471-51580694(+)$1	1	10	13	9.0000
...	chr3:49135524-49135728(-)$1	1	49	52	9.0000
...	chr3:50293571-50293844(+)$1	1	5	8	9.0000
).)	chr7:105890067-105890309(-)$1	1	44	47	9.0000
)))	chr6:75947439-75947719(-)$1	1	15	18	9.0000
(((	chr14:24607157-24607379(+)$1	1	27	30	9.0000
((.	chr16:81422888-81423146(+)$1	1	72	75	9.0000
...	chr2:171823015-171823261(+)$1	1	40	43	9.0000
)))	chr19:10745771-10746032(+)$1	1	220	223	9.0000
...	chr12:56212752-56213058(+)$1	1	33	36	9.0000
)))	chr2:85808625-85808841(+)$1	1	99	102	9.0000
...	chr2:96950075-96950305(-)$1	1	2	5	9.0000
(((	chr7:23561267-23561483(-)$1	1	55	58	9.0000
...	chr17:80202317-80202602(-)$1	1	41	44	9.0000
)))	chr15:99901472-99901702(+)$1	1	48	51	9.0000
((.	chr12:113826403-113826632(+)$1	1	26	29	9.0000
)..	chr19:19516687-19516903(+)$1	1	21	24	9.0000
)..	chr6:30037324-30037536(+)$1	1	85	88	9.0000
(((	chr6:4119380-4119594(-)$1	1	9	12	9.0000
)))	chr1:228681543-228681758(+)$1	1	104	107	9.0000
...	chr16:28855920-28856145(-)$1	1	28	31	9.0000
)..	chr17:61907558-61907785(+)$1	1	50	53	9.0000
)).	chr12:54745381-54745615(+)$1	1	38	41	9.0000
((.	chr5:81571944-81572150(-)$1	1	19	22	9.0000
(.(	chr9:35101381-35101611(-)$1	1	54	57	9.0000
)).	chr18:19203629-19203863(+)$1	1	95	98	9.0000
)).	chr7:24931981-24932245(-)$1	1	168	171	9.0000
(((	chr19:49518838-49519043(+)$1	1	67	70	9.0000
)))	chr8:21939494-21939755(+)$1	1	82	85	9.0000
(..	chr16:24226558-24226787(+)$1	1	19	22	9.0000
...	chr8:28909581-28909792(+)$1	1	73	76	9.0000
...	chr10:51590031-51590249(+)$1	1	17	20	9.0000
)))	chr2:74425678-74425922(+)$1	1	221	224	9.0000
...	chr19:39328965-39329180(-)$1	1	21	24	9.0000
...	chr12:57108287-57108503(-)$1	1	38	41	9.0000
(..	chr3:52312150-52312408(-)$1	1	33	36	9.0000
(((	chr19:46856903-46857254(+)$1	1	14	17	9.0000
(((	chr18:9861894-9862167(+)$1	1	6	9	9.0000
)))	chr1:36353925-36354192(+)$1	1	175	178	9.0000
(..	chr17:38178833-38179068(-)$1	1	9	12	9.0000
(..	chr14:23415602-23415831(-)$1	1	19	22	9.0000
)..	chr17:80011643-80011887(+)$1	1	106	109	9.0000
(((	chrX:129263944-129264198(-)$1	1	57	60	9.0000
)..	chr16:2124147-2124451(+)$1	1	181	184	9.0000
((.	chr16:1750130-1750381(+)$1	1	16	19	9.0000
)))	chr1:19443793-19444008(-)$1	1	16	19	9.0000
)).	chr19:13058644-13058888(+)$1	1	19	22	9.0000
...	chr13:27830472-27830675(+)$1	1	3	6	9.0000
)).	chr22:30977416-30977644(-)$1	1	126	129	9.0000
...	chr17:36478450-36478710(+)$1	1	9	12	9.0000
(((	chr11:73441709-73441953(-)$1	1	19	22	9.0000
...	chr19:46190720-46190924(-)$1	1	8	11	9.0000
(((	chr11:61557289-61557494(-)$1	1	1	4	9.0000
...	chr19:16243686-16244010(+)$1	1	18	21	9.0000
(((	chr17:41151849-41152051(+)$1	1	13	16	9.0000
(((	chr13:28009028-28009271(+)$1	1	20	23	9.0000
...	chr11:502038-502317(-)$1	1	1	4	9.0000
...	chr1:2334706-2334919(+)$1	1	13	16	9.0000
(..	chr12:111157698-111157915(-)$1	1	18	21	9.0000
(..	chr12:124922388-124922642(-)$1	1	99	102	9.0000
)))	chr2:207025211-207025427(+)$1	1	77	80	9.0000
(..	chr11:68451981-68452188(+)$1	1	193	196	9.0000
...	chr16:23848595-23848811(+)$1	1	18	21	9.0000
(..	chr11:64537766-64537980(-)$1	1	25	28	9.0000
((.	chr19:33078091-33078352(+)$1	1	8	11	9.0000
...	chr19:11729256-11729527(+)$1	1	26	29	9.0000
(((	chr2:131096320-131096538(-)$1	1	5	8	9.0000
(..	chr12:113596382-113596589(-)$1	1	38	41	9.0000
((.	chr8:42940577-42940833(+)$1	1	66	69	9.0000
(((	chr9:127283849-127284102(-)$1	1	43	46	9.0000
...	chr3:186503642-186503856(+)$1	1	2	5	9.0000
...	chr16:85839352-85839562(+)$1	1	23	26	9.0000
)..	chr14:67826274-67826610(-)$1	1	29	32	9.0000
..(	chrX:153714013-153714271(-)$1	1	23	26	9.0000
(((	chr3:127771602-127771843(+)$1	1	0	3	9.0000
..(	chr16:85840434-85840647(+)$1	1	22	25	9.0000
)..	chr3:52027823-52028035(-)$1	1	105	108	9.0000

#PSSM
G : 0.97	g : 0.03	
A : 0.97	a : 0.03	
A : 0.97	a : 0.03	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_UTR_m3_run1.nuc.txt

#NT
GGAGGAG	chr22:19419049-19419362(-)$1	313	24	31	15.5370
GGUGGCG	chr17:74733264-74733513(-)$1	249	37	44	14.9814
GGGGGCG	chr11:62432687-62432933(+)$1	246	48	55	15.4444
GGUGGCG	chr19:9938497-9938778(+)$1	281	132	139	14.9814
GGAGGCG	chr13:115000302-115000568(+)$1	266	205	212	18.5925
GGAGGCG	chr2:54197795-54198044(-)$1	249	47	54	18.5925
GGGGGCG	chr1:155904033-155904290(-)$1	257	61	68	15.4444
GGAGGGG	chr1:52344249-52344519(-)$1	270	110	117	15.2592
GGAGGAG	chr6:31704054-31704312(-)$1	258	35	42	15.5370
GGGGGCG	chr4:129208779-129209059(-)$1	280	76	83	15.4444
GGAGGAG	chr2:28974683-28974935(+)$1	252	32	39	15.5370
GGAGGGG	chr10:7830054-7830326(+)$1	272	39	46	15.2592
GGAGGCG	chr3:38206926-38207182(+)$1	256	17	24	18.5925
ggaggag	chr4:174089817-174090082(+)$1	265	81	88	15.5370
GGAGGCG	chr3:32726578-32726870(+)$1	292	5	12	18.5925
GGAGGUG	chr20:34252555-34252826(-)$1	271	22	29	15.1666
GGCGGCG	chr1:109825592-109825852(-)$1	260	133	140	14.7962
GGAGGCG	chr2:230786504-230786756(-)$1	252	9	16	18.5925
GGAGGUG	chr1:150208217-150208516(-)$1	299	2	9	15.1666
gggggcg	chr7:154794540-154794786(-)$1	246	63	70	15.4444
GGAGGGG	chr19:39926441-39926688(-)$1	247	226	233	15.2592
GGAGGCG	chr5:179050414-179050686(-)$1	272	257	264	18.5925
GGAGGCG	chr20:2451256-2451536(-)$1	280	157	164	18.5925
GGAGGCG	chr21:47878917-47879215(+)$1	298	150	157	18.5925
ggaggcg	chr2:46926276-46926541(+)$1	265	90	97	18.5925
GGAGGCG	chr10:103113735-103113996(+)$1	261	114	121	18.5925
GGAGGCG	chr3:38206982-38207215(+)$1	233	176	183	18.5925
GGGGGCG	chr6:31619946-31620222(-)$1	276	61	68	15.4444
GGAGGCG	chr12:30907473-30907727(-)$1	254	83	90	18.5925
GGGGGCG	chr10:101379907-101380260(-)$1	353	24	31	15.4444
GGAGGCG	chr7:111202238-111202521(-)$1	283	157	164	18.5925
ggaggcg	chr5:137688271-137688538(+)$1	267	172	179	18.5925
ggaggag	chr11:85779964-85780214(-)$1	250	18	25	15.5370
GGAGGCG	chr4:174255139-174255399(-)$1	260	145	152	18.5925
GGAGGCG	chr1:16939857-16940138(-)$1	281	134	141	18.5925
GGAGGCG	chr3:197024782-197025055(-)$1	273	108	115	18.5925
GGAGGCG	chr20:49126817-49127110(+)$1	293	219	226	18.5925
GGAGGAG	chr2:139259405-139259702(+)$1	297	122	129	15.5370
ggaggcg	chr16:1756145-1756394(+)$1	249	97	104	18.5925
ggaggcg	chr5:137688338-137688618(+)$1	280	105	112	18.5925
ggaggcg	chr9:101558621-101558914(-)$1	293	269	276	18.5925
GGAGGCG	chr9:101867328-101867596(+)$1	268	161	168	18.5925
GGGGGCG	chr2:231577487-231577742(+)$1	255	6	13	15.4444
ggaggcg	chr1:46269162-46269470(+)$1	308	42	49	18.5925
GGGGGCG	chr12:56122010-56122239(-)$1	229	200	207	15.4444
GGAGGAG	chr5:133707153-133707365(+)$1	212	149	156	15.5370
GGAGGCG	chr3:122785815-122786174(+)$1	359	76	83	18.5925
GGUGGCG	chr2:99224981-99225287(+)$1	306	46	53	14.9814
GGAGGCG	chr22:38902069-38902317(-)$1	248	212	219	18.5925
ggaggCG	chr1:87380273-87380566(+)$1	293	111	118	18.5925
GGAGGUG	chr16:3767366-3767623(-)$1	257	198	205	15.1666
GGAGGCG	chr9:19380093-19380332(-)$1	239	117	124	18.5925
GGAGGCG	chrX:77359654-77359919(+)$1	265	40	47	18.5925

#otherMatches

#Struct PSSM
ggnnnnn	chr22:50699870-50700236(-)$1	366	6	13	15.2592
BKKA{DD	chr22:19419049-19419362(-)$1	313	24	31	15.5370
{DDDDCC	chr17:74733264-74733513(-)$1	249	37	44	14.9814
LLLCCCK	chr11:62432687-62432933(+)$1	246	48	55	15.4444
ii]dddd	chr19:9938497-9938778(+)$1	281	132	139	14.9814
2a22bb]	chr13:115000302-115000568(+)$1	266	205	212	18.5925
a4444bb	chr2:54197795-54198044(-)$1	249	47	54	18.5925
deeeee]	chr1:155904033-155904290(-)$1	257	61	68	15.4444
fff[ddd	chr1:52344249-52344519(-)$1	270	110	117	15.2592
fffIIII	chr6:31704054-31704312(-)$1	258	35	42	15.5370
=======	chr4:129208779-129209059(-)$1	280	76	83	15.4444
:DDDDKK	chr2:28974683-28974935(+)$1	252	32	39	15.5370
e!!a[cc	chr10:7830054-7830326(+)$1	272	39	46	15.2592
EE:bbbb	chr3:38206926-38207182(+)$1	256	17	24	18.5925
FFFMMMM	chr4:174089817-174090082(+)$1	265	81	88	15.5370
EEEEE{A	chr3:32726578-32726870(+)$1	292	5	12	18.5925
BBKKBB{	chr20:34252555-34252826(-)$1	271	22	29	15.1666
ddddeee	chr1:109825592-109825852(-)$1	260	133	140	14.7962
[ccc[dd	chr2:230786504-230786756(-)$1	252	9	16	18.5925
JJJJJJJ	chr1:150208217-150208516(-)$1	299	2	9	15.1666
C{BBKKC	chr7:154794540-154794786(-)$1	246	63	70	15.4444
JJJJJJY	chr19:39926441-39926688(-)$1	247	226	233	15.2592
BB}EEEE	chr5:179050414-179050686(-)$1	272	257	264	18.5925
meeeee:	chr20:2451256-2451536(-)$1	280	157	164	18.5925
bb:GGGG	chr21:47878917-47879215(+)$1	298	150	157	18.5925
DDD{A{C	chr2:46926276-46926541(+)$1	265	90	97	18.5925
d22cccb	chr10:103113735-103113996(+)$1	261	114	121	18.5925
ammmma2	chr3:38206982-38207215(+)$1	233	176	183	18.5925
[gggggg	chr6:31619946-31620222(-)$1	276	61	68	15.4444
##dddd[	chr12:30907473-30907727(-)$1	254	83	90	18.5925
ccc[ccc	chr10:101379907-101380260(-)$1	353	24	31	15.4444
hhdddd"	chr7:111202238-111202521(-)$1	283	157	164	18.5925
33eeeee	chr5:137688271-137688538(+)$1	267	172	179	18.5925
GGGGGGK	chr11:85779964-85780214(-)$1	250	18	25	15.5370
:::eeee	chr4:174255139-174255399(-)$1	260	145	152	18.5925
d[bb[cc	chr1:16939857-16940138(-)$1	281	134	141	18.5925
EE{DDDD	chr3:197024782-197025055(-)$1	273	108	115	18.5925
:EEEEE}	chr20:49126817-49127110(+)$1	293	219	226	18.5925
ee!!bb[	chr2:139259405-139259702(+)$1	297	122	129	15.5370
dd"""bb	chr16:1756145-1756394(+)$1	249	97	104	18.5925
a"""bb[	chr5:137688338-137688618(+)$1	280	105	112	18.5925
lllccc2	chr9:101558621-101558914(-)$1	293	269	276	18.5925
cc333dd	chr9:101867328-101867596(+)$1	268	161	168	18.5925
eeemmmm	chr2:231577487-231577742(+)$1	255	6	13	15.4444
eeee[a[	chr1:46269162-46269470(+)$1	308	42	49	18.5925
gggggff	chr12:56122010-56122239(-)$1	229	200	207	15.4444
bb[hhhh	chr5:133707153-133707365(+)$1	212	149	156	15.5370
dd:BB}E	chr3:122785815-122786174(+)$1	359	76	83	18.5925
##bb[cc	chr2:99224981-99225287(+)$1	306	46	53	14.9814
ddfffff	chr22:38902069-38902317(-)$1	248	212	219	18.5925
++++ccc	chr1:87380273-87380566(+)$1	293	111	118	18.5925
BB}DDDD	chr16:3767366-3767623(-)$1	257	198	205	15.1666
c]fffff	chr9:19380093-19380332(-)$1	239	117	124	18.5925
ffffff=	chrX:77359654-77359919(+)$1	265	40	47	18.5925

#DB
((.....	chr22:50699870-50700236(-)$1	1	6	13	15.2592
(..(.((	chr22:19419049-19419362(-)$1	1	24	31	15.5370
.((((((	chr17:74733264-74733513(-)$1	1	37	44	14.9814
...(((.	chr11:62432687-62432933(+)$1	1	48	55	15.4444
)).))))	chr19:9938497-9938778(+)$1	1	132	139	14.9814
.)..)).	chr13:115000302-115000568(+)$1	1	205	212	18.5925
)....))	chr2:54197795-54198044(-)$1	1	47	54	18.5925
)))))).	chr1:155904033-155904290(-)$1	1	61	68	15.4444
(((.(((	chr1:52344249-52344519(-)$1	1	110	117	15.2592
)))((((	chr6:31704054-31704312(-)$1	1	35	42	15.5370
)))))))	chr4:129208779-129209059(-)$1	1	76	83	15.4444
.((((..	chr2:28974683-28974935(+)$1	1	32	39	15.5370
(..(.((	chr10:7830054-7830326(+)$1	1	39	46	15.2592
((.((((	chr3:38206926-38207182(+)$1	1	17	24	18.5925
(((....	chr4:174089817-174090082(+)$1	1	81	88	15.5370
(((((.(	chr3:32726578-32726870(+)$1	1	5	12	18.5925
((..((.	chr20:34252555-34252826(-)$1	1	22	29	15.1666
(((((((	chr1:109825592-109825852(-)$1	1	133	140	14.7962
.(((.((	chr2:230786504-230786756(-)$1	1	9	16	18.5925
(((((((	chr1:150208217-150208516(-)$1	1	2	9	15.1666
(.((..(	chr7:154794540-154794786(-)$1	1	63	70	15.4444
)))))).	chr19:39926441-39926688(-)$1	1	226	233	15.2592
)).))))	chr5:179050414-179050686(-)$1	1	257	264	18.5925
.))))).	chr20:2451256-2451536(-)$1	1	157	164	18.5925
)).))))	chr21:47878917-47879215(+)$1	1	150	157	18.5925
(((.(.(	chr2:46926276-46926541(+)$1	1	90	97	18.5925
)..)))(	chr10:103113735-103113996(+)$1	1	114	121	18.5925
(....).	chr3:38206982-38207215(+)$1	1	176	183	18.5925
.((((((	chr6:31619946-31620222(-)$1	1	61	68	15.4444
..((((.	chr12:30907473-30907727(-)$1	1	83	90	18.5925
(((.(((	chr10:101379907-101380260(-)$1	1	24	31	15.4444
))((((.	chr7:111202238-111202521(-)$1	1	157	164	18.5925
..)))))	chr5:137688271-137688538(+)$1	1	172	179	18.5925
((((((.	chr11:85779964-85780214(-)$1	1	18	25	15.5370
...((((	chr4:174255139-174255399(-)$1	1	145	152	18.5925
(.((.((	chr1:16939857-16940138(-)$1	1	134	141	18.5925
((.((((	chr3:197024782-197025055(-)$1	1	108	115	18.5925
.))))).	chr20:49126817-49127110(+)$1	1	219	226	18.5925
((..((.	chr2:139259405-139259702(+)$1	1	122	129	15.5370
((...((	chr16:1756145-1756394(+)$1	1	97	104	18.5925
(...((.	chr5:137688338-137688618(+)$1	1	105	112	18.5925
...))).	chr9:101558621-101558914(-)$1	1	269	276	18.5925
))...))	chr9:101867328-101867596(+)$1	1	161	168	18.5925
(((....	chr2:231577487-231577742(+)$1	1	6	13	15.4444
((((.(.	chr1:46269162-46269470(+)$1	1	42	49	18.5925
)))))((	chr12:56122010-56122239(-)$1	1	200	207	15.4444
((.((((	chr5:133707153-133707365(+)$1	1	149	156	15.5370
)).)).)	chr3:122785815-122786174(+)$1	1	76	83	18.5925
..((.((	chr2:99224981-99225287(+)$1	1	46	53	14.9814
)))))))	chr22:38902069-38902317(-)$1	1	212	219	18.5925
....(((	chr1:87380273-87380566(+)$1	1	111	118	18.5925
)).))))	chr16:3767366-3767623(-)$1	1	198	205	15.1666
).)))))	chr9:19380093-19380332(-)$1	1	117	124	18.5925
(((((((	chrX:77359654-77359919(+)$1	1	40	47	18.5925

#PSSM
G : 0.81	g : 0.18	
G : 0.81	g : 0.18	
A : 0.61	a : 0.16	G : 0.12	U : 0.05	C : 0.01	g : 0.01	
G : 0.81	g : 0.18	
G : 0.81	g : 0.18	
C : 0.61	c : 0.12	A : 0.09	G : 0.07	U : 0.05	a : 0.03	
G : 0.83	g : 0.16	

#score	919.1851851851849
#seq	54
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_CDS_m3_run2.nuc.txt

#NT
GCGGGCCCC	chr10:3823637-3823884(-)$1	247	64	73	12.8333
GCUGCCUCC	chr17:42953132-42953415(-)$1	283	48	57	11.6428
GCAGGAUCU	chr1:43396083-43396310(-)$1	227	24	33	12.1190
GGAGGCGCC	chr14:104145831-104146092(+)$1	261	83	92	13.6666
GCAGUCUCU	chr21:45557104-45557358(+)$1	254	192	201	10.9285
UCGGGCUCC	chr5:140021294-140021545(+)$1	251	186	195	11.8809
GCAGGCUCC	chr17:79532338-79532603(-)$1	265	244	253	18.6666
GCAGGGUGC	chr20:61299181-61299434(+)$1	253	36	45	10.9285
GCUGGCUCC	chr19:48978137-48978394(+)$1	257	51	60	15.5714
GCAGGUUCU	chr4:1936883-1937184(+)$1	301	286	295	11.4047
CCUGGCUCC	chr21:45507700-45507977(+)$1	277	200	209	11.2857
GCAGGAGCC	chr9:135930356-135930614(+)$1	258	224	233	12.8333
GCAGCAUCC	chr7:5429915-5430156(-)$1	241	105	114	11.8809
GCAGGCUCC	chr11:61110205-61110491(+)$1	286	17	26	18.6666
ACAGGCCCC	chr8:145140339-145140582(+)$1	243	148	157	11.2857
GCAGGAUCU	chr1:43396149-43396368(-)$1	219	82	91	12.1190
GCGGGCUCC	chr15:41099389-41099642(-)$1	253	219	228	16.0476
GCCGGCUUC	chr9:74979409-74979681(-)$1	272	23	32	11.0476
GGAGGCUCC	chr19:1271398-1271635(+)$1	237	207	216	16.6428
GCCGCCUCC	chr8:6566346-6566593(+)$1	247	66	75	11.6428
GCCGGCUCC	chr16:70698650-70698890(-)$1	240	134	143	15.5714
GGAGGGUCC	chr19:1398695-1399006(-)$1	311	181	190	13.3095
auaggcucc	chr1:22216305-22216552(-)$1	247	147	156	11.2857
UCAGGCACC	chr20:43052819-43053100(+)$1	281	259	268	10.9285
GGAGGCGCC	chr1:8073199-8073439(-)$1	240	35	44	13.6666
GCAGGCUGC	chr7:150020569-150020829(+)$1	260	55	64	14.2619
GGAGGCUCC	chr17:4800039-4800289(+)$1	250	72	81	16.6428
GGAGGCUCC	chr1:46073462-46073734(+)$1	272	227	236	16.6428
GCAGGCGCC	chr16:279049-279353(-)$1	304	213	222	15.6904
GGAGGCUCC	chr21:37417701-37417951(-)$1	250	214	223	16.6428
gcagaaucc	chr17:17720834-17721085(-)$1	251	228	237	11.6428
GAAGGCCCC	chr19:40740778-40741039(-)$1	261	178	187	12.3571
GGAGGGUCC	chr19:50905310-50905631(+)$1	321	99	108	13.3095
GGAGGAGCC	chr16:28847368-28847611(+)$1	243	107	116	10.8095
GAAGUCUCC	chr20:3172239-3172488(-)$1	249	209	218	11.5238
GCGGGCUCC	chr8:27629850-27630139(-)$1	289	148	157	16.0476
GCAGGCGCG	chr16:66864539-66864852(-)$1	313	38	47	11.5238
GCGGGCUCU	chr22:39709025-39709302(-)$1	277	10	19	12.3571
GGAGGCUCC	chr16:87377026-87377317(-)$1	291	235	244	16.6428
GGAAGCUCC	chr8:94745810-94746093(-)$1	283	10	19	11.8809
GCGGGAUCC	chr3:15247998-15248288(+)$1	290	175	184	13.1904

#otherMatches

#Struct PSSM
BB{GGGGGG	chr5:177631659-177631951(+)$1	292	53	62	12.8333
mmddddabb	chr10:3823637-3823884(-)$1	247	64	73	12.8333
ccc]bbddd	chr17:42953132-42953415(-)$1	283	48	57	11.6428
ggggg!!bb	chr1:43396083-43396310(-)$1	227	24	33	12.1190
b[ggggggg	chr14:104145831-104146092(+)$1	261	83	92	13.6666
ggggg[hhh	chr21:45557104-45557358(+)$1	254	192	201	10.9285
hhhhmmmmh	chr5:140021294-140021545(+)$1	251	186	195	11.8809
EE::fffff	chr17:79532338-79532603(-)$1	265	244	253	18.6666
ccc]ddddH	chr20:61299181-61299434(+)$1	253	36	45	10.9285
ii!!a!!cc	chr19:48978137-48978394(+)$1	257	51	60	15.5714
bb:BBEEEE	chr4:1936883-1937184(+)$1	301	286	295	11.4047
c22iiiiii	chr21:45507700-45507977(+)$1	277	200	209	11.2857
dd55555dd	chr9:135930356-135930614(+)$1	258	224	233	12.8333
eooooooee	chr7:5429915-5430156(-)$1	241	105	114	11.8809
ggggggg[e	chr11:61110205-61110491(+)$1	286	17	26	18.6666
cFFFFFF::	chr8:145140339-145140582(+)$1	243	148	157	11.2857
ggggg!!bb	chr1:43396149-43396368(-)$1	219	82	91	12.1190
3dddd22cc	chr15:41099389-41099642(-)$1	253	219	228	16.0476
cccffffff	chr9:74979409-74979681(-)$1	272	23	32	11.0476
dddFFFFFF	chr19:1271398-1271635(+)$1	237	207	216	16.6428
dddd"""dd	chr8:6566346-6566593(+)$1	247	66	75	11.6428
dddbboooo	chr16:70698650-70698890(-)$1	240	134	143	15.5714
44ffffff]	chr19:1398695-1399006(-)$1	311	181	190	13.3095
""ffffffp	chr1:22216305-22216552(-)$1	247	147	156	11.2857
iiiEEEEE}	chr20:43052819-43053100(+)$1	281	259	268	10.9285
DDDccceee	chr1:8073199-8073439(-)$1	240	35	44	13.6666
===]bb]ff	chr7:150020569-150020829(+)$1	260	55	64	14.2619
ffffflllf	chr17:4800039-4800289(+)$1	250	72	81	16.6428
dGGGGGGGZ	chr1:46073462-46073734(+)$1	272	227	236	16.6428
CC::ggggg	chr16:279049-279353(-)$1	304	213	222	15.6904
fffffappp	chr21:37417701-37417951(-)$1	250	214	223	16.6428
ccccmmmmc	chr17:17720834-17721085(-)$1	251	228	237	11.6428
oooeeeeeb	chr19:40740778-40741039(-)$1	261	178	187	12.3571
dddd]abba	chr19:50905310-50905631(+)$1	321	99	108	13.3095
ee:::::FF	chr16:28847368-28847611(+)$1	243	107	116	10.8095
cpppppppc	chr20:3172239-3172488(-)$1	249	209	218	11.5238
fffffCCCF	chr8:27629850-27630139(-)$1	289	148	157	16.0476
NNNNHHHHH	chr16:66864539-66864852(-)$1	313	38	47	11.5238
hh[ddddbb	chr22:39709025-39709302(-)$1	277	10	19	12.3571
BDDDD~~~~	chr16:87377026-87377317(-)$1	291	235	244	16.6428
JJJJJJJBB	chr8:94745810-94746093(-)$1	283	10	19	11.8809
hhhhh"""d	chr3:15247998-15248288(+)$1	290	175	184	13.1904

#DB
((.((((((	chr5:177631659-177631951(+)$1	1	53	62	12.8333
..)))))))	chr10:3823637-3823884(-)$1	1	64	73	12.8333
))).))(((	chr17:42953132-42953415(-)$1	1	48	57	11.6428
(((((..((	chr1:43396083-43396310(-)$1	1	24	33	12.1190
(.(((((((	chr14:104145831-104146092(+)$1	1	83	92	13.6666
(((((.(((	chr21:45557104-45557358(+)$1	1	192	201	10.9285
((((....)	chr5:140021294-140021545(+)$1	1	186	195	11.8809
))..(((((	chr17:79532338-79532603(-)$1	1	244	253	18.6666
))).))))(	chr20:61299181-61299434(+)$1	1	36	45	10.9285
((..(..((	chr19:48978137-48978394(+)$1	1	51	60	15.5714
)).))))))	chr4:1936883-1937184(+)$1	1	286	295	11.4047
)..))))))	chr21:45507700-45507977(+)$1	1	200	209	11.2857
)).....))	chr9:135930356-135930614(+)$1	1	224	233	12.8333
(......))	chr7:5429915-5430156(-)$1	1	105	114	11.8809
(((((((.(	chr11:61110205-61110491(+)$1	1	17	26	18.6666
)))))))..	chr8:145140339-145140582(+)$1	1	148	157	11.2857
(((((..((	chr1:43396149-43396368(-)$1	1	82	91	12.1190
.))))..))	chr15:41099389-41099642(-)$1	1	219	228	16.0476
(((((((((	chr9:74979409-74979681(-)$1	1	23	32	11.0476
)))))))))	chr19:1271398-1271635(+)$1	1	207	216	16.6428
((((...((	chr8:6566346-6566593(+)$1	1	66	75	11.6428
)))((....	chr16:70698650-70698890(-)$1	1	134	143	15.5714
..)))))).	chr19:1398695-1399006(-)$1	1	181	190	13.3095
..((((((.	chr1:22216305-22216552(-)$1	1	147	156	11.2857
)))))))).	chr20:43052819-43053100(+)$1	1	259	268	10.9285
(((((((((	chr1:8073199-8073439(-)$1	1	35	44	13.6666
))).)).))	chr7:150020569-150020829(+)$1	1	55	64	14.2619
(((((...)	chr17:4800039-4800289(+)$1	1	72	81	16.6428
)))))))).	chr1:46073462-46073734(+)$1	1	227	236	16.6428
))..(((((	chr16:279049-279353(-)$1	1	213	222	15.6904
((((((...	chr21:37417701-37417951(-)$1	1	214	223	16.6428
((((....)	chr17:17720834-17721085(-)$1	1	228	237	11.6428
...))))))	chr19:40740778-40741039(-)$1	1	178	187	12.3571
)))).))))	chr19:50905310-50905631(+)$1	1	99	108	13.3095
)).....))	chr16:28847368-28847611(+)$1	1	107	116	10.8095
(.......)	chr20:3172239-3172488(-)$1	1	209	218	11.5238
)))))))))	chr8:27629850-27630139(-)$1	1	148	157	16.0476
....(((((	chr16:66864539-66864852(-)$1	1	38	47	11.5238
((.((((((	chr22:39709025-39709302(-)$1	1	10	19	12.3571
)))))....	chr16:87377026-87377317(-)$1	1	235	244	16.6428
(((((((((	chr8:94745810-94746093(-)$1	1	10	19	11.8809
(((((...(	chr3:15247998-15248288(+)$1	1	175	184	13.1904

#PSSM
G : 0.85	U : 0.04	C : 0.02	A : 0.02	a : 0.02	g : 0.02	
C : 0.64	G : 0.26	A : 0.04	u : 0.02	c : 0.02	
A : 0.64	G : 0.16	U : 0.07	C : 0.07	a : 0.04	
G : 0.92	g : 0.04	A : 0.02	
G : 0.83	C : 0.07	U : 0.04	g : 0.02	a : 0.02	
C : 0.71	A : 0.14	G : 0.07	U : 0.02	c : 0.02	a : 0.02	
U : 0.69	G : 0.14	C : 0.09	u : 0.04	A : 0.02	
C : 0.88	G : 0.04	c : 0.04	U : 0.02	
C : 0.80	U : 0.11	c : 0.04	G : 0.02	

#score	561.8571428571433
#seq	42
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_UTR_m2_run1.nuc.txt

#NT
GGUAGGAGG	chr3:14988972-14989280(-)$1	308	169	178	18.5853
gggaggagg	chr6:15248982-15249302(+)$1	320	89	98	22.7317
GGGAGGAGG	chr7:102036324-102036647(+)$1	323	178	187	22.7317
GGGAGGAGG	chr12:109124803-109125153(-)$1	350	218	227	22.7317
GGGCGGAGG	chr7:5569382-5569631(-)$1	249	97	106	18.9512
GGGAGGAAG	chr2:61763735-61763989(-)$1	254	2	11	18.0975
GGGAGGGGG	chr9:134371895-134372176(+)$1	281	115	124	18.7073
CGGAGGAGG	chr2:54197790-54198049(-)$1	259	48	57	18.5853
GGCUGGAGG	chr21:47610630-47610942(-)$1	312	65	74	16.0243
GGCAGGAGG	chr1:150533100-150533343(+)$1	243	128	137	19.0731
gugaggagg	chr8:145032774-145033072(-)$1	298	219	228	18.0975
gggaggagg	chr1:27929968-27930300(-)$1	332	5	14	22.7317
GGGAGGUGG	chr3:23851852-23852198(+)$1	346	172	181	18.5853
GGGAGGGGG	chr9:126691945-126692268(-)$1	323	234	243	18.7073
GGGAGGUGG	chr1:1208155-1208446(-)$1	291	103	112	18.5853
GGGUGGAGG	chr19:55558632-55558918(+)$1	286	76	85	19.6829
gggaggggg	chr19:1592468-1592843(-)$1	375	22	31	18.7073
GGGAGCAGG	chr19:1474574-1474864(-)$1	290	148	157	18.7073
GAGAGGAGG	chr3:195622238-195622623(-)$1	385	192	201	18.0975
GGGAGCAGG	chr7:100027501-100027786(+)$1	285	61	70	18.7073
AGGAGGAGG	chr20:62331326-62331602(-)$1	276	198	207	18.3414
GGGUGGAGG	chr19:1395163-1395471(+)$1	308	1	10	19.6829
CGGAGGAGG	chr3:195635405-195635690(-)$1	285	107	116	18.5853
GGGAGGAGU	chr16:89762167-89762446(+)$1	279	243	252	18.2195
GGGAGGAGU	chr15:80214902-80215226(-)$1	324	25	34	18.2195
GGGAGCAGG	chr12:28343358-28343727(+)$1	369	208	217	18.7073
GGGUGGAGG	chr1:2326695-2327006(+)$1	311	33	42	19.6829
GGGUGGAGG	chr16:2138719-2139069(-)$1	350	152	161	19.6829
CGGAggagg	chr21:35445786-35446180(+)$1	394	370	379	18.5853
GGGUGGAGG	chr6:31730659-31730979(+)$1	320	104	113	19.6829
GGGAGGAGG	chr6:117996610-117996880(+)$1	270	46	55	22.7317
GGGAGGAGG	chr16:2871146-2871481(+)$1	335	105	114	22.7317
GGGUGGAGG	chr16:89663061-89663318(+)$1	257	200	209	19.6829
GGGAUGAGG	chr17:79878840-79879132(-)$1	292	202	211	17.9756
GGGAGGAGG	chr6:117996568-117996810(+)$1	242	88	97	22.7317
GGGAGCAGG	chr11:61583322-61583587(-)$1	265	44	53	18.7073
GGCAGGAGG	chr19:54970904-54971185(+)$1	281	121	130	19.0731
ggcaggagg	chr21:47721047-47721331(-)$1	284	21	30	19.0731
GGCAGGAGG	chr19:41882620-41882947(+)$1	327	256	265	19.0731
GGGGGGAGG	chr22:19431683-19432009(-)$1	326	29	38	18.9512

#otherMatches

#Struct PSSM
}EEEEE}A}	chr22:20109977-20110226(+)$1	249	205	214	18.0975
gg[======	chr3:14988972-14989280(-)$1	308	169	178	18.5853
=========	chr6:15248982-15249302(+)$1	320	89	98	22.7317
GGGGGG::f	chr7:102036324-102036647(+)$1	323	178	187	22.7317
dddd4444b	chr12:109124803-109125153(-)$1	350	218	227	22.7317
eeeCCC}CC	chr7:5569382-5569631(-)$1	249	97	106	18.9512
HHHHHHHH:	chr2:61763735-61763989(-)$1	254	2	11	18.0975
eeeeccc[d	chr9:134371895-134372176(+)$1	281	115	124	18.7073
nnnna4444	chr2:54197790-54198049(-)$1	259	48	57	18.5853
dddd]iiii	chr21:47610630-47610942(-)$1	312	65	74	16.0243
gggggg]bb	chr1:150533100-150533343(+)$1	243	128	137	19.0731
mmmma]ccc	chr8:145032774-145033072(-)$1	298	219	228	18.0975
iiiii!!a[	chr1:27929968-27930300(-)$1	332	5	14	22.7317
EEEE}JJJJ	chr3:23851852-23852198(+)$1	346	172	181	18.5853
&&&&&&&cc	chr9:126691945-126692268(-)$1	323	234	243	18.7073
IIIIIIYYF	chr1:1208155-1208446(-)$1	291	103	112	18.5853
eeeee"""h	chr19:55558632-55558918(+)$1	286	76	85	19.6829
HHHHHHHH{	chr19:1592468-1592843(-)$1	375	22	31	18.7073
c]ddddddd	chr19:1474574-1474864(-)$1	290	148	157	18.7073
g]a22bbBB	chr3:195622238-195622623(-)$1	385	192	201	18.0975
:cccooooo	chr7:100027501-100027786(+)$1	285	61	70	18.7073
nbb]bb]bb	chr20:62331326-62331602(-)$1	276	198	207	18.3414
FFFFFF{A{	chr19:1395163-1395471(+)$1	308	1	10	19.6829
b::::::::	chr3:195635405-195635690(-)$1	285	107	116	18.5853
HHHHHHHDD	chr16:89762167-89762446(+)$1	279	243	252	18.2195
MMDDDD{CC	chr15:80214902-80215226(-)$1	324	25	34	18.2195
ddd[bb+++	chr12:28343358-28343727(+)$1	369	208	217	18.7073
cc[cccnnn	chr1:2326695-2327006(+)$1	311	33	42	19.6829
iii]dddd:	chr16:2138719-2139069(-)$1	350	152	161	19.6829
pa]cccccc	chr21:35445786-35446180(+)$1	394	370	379	18.5853
fffff====	chr6:31730659-31730979(+)$1	320	104	113	19.6829
wwwwwwwww	chr6:117996610-117996880(+)$1	270	46	55	22.7317
dd[ccc[ee	chr16:2871146-2871481(+)$1	335	105	114	22.7317
EEECCC}DD	chr16:89663061-89663318(+)$1	257	200	209	19.6829
nndddd:EE	chr17:79878840-79879132(-)$1	292	202	211	17.9756
wwwwwwwww	chr6:117996568-117996810(+)$1	242	88	97	22.7317
cdddd::::	chr11:61583322-61583587(-)$1	265	44	53	18.7073
eeeee[eee	chr19:54970904-54971185(+)$1	281	121	130	19.0731
HHHHHH{BB	chr21:47721047-47721331(-)$1	284	21	30	19.0731
YDDDDBB}E	chr19:41882620-41882947(+)$1	327	256	265	19.0731
hhhhhh!!b	chr22:19431683-19432009(-)$1	326	29	38	18.9512

#DB
.))))).).	chr22:20109977-20110226(+)$1	1	205	214	18.0975
((.((((((	chr3:14988972-14989280(-)$1	1	169	178	18.5853
)))))))))	chr6:15248982-15249302(+)$1	1	89	98	22.7317
((((((..(	chr7:102036324-102036647(+)$1	1	178	187	22.7317
))))....)	chr12:109124803-109125153(-)$1	1	218	227	22.7317
)))))).))	chr7:5569382-5569631(-)$1	1	97	106	18.9512
((((((((.	chr2:61763735-61763989(-)$1	1	2	11	18.0975
))))(((.(	chr9:134371895-134372176(+)$1	1	115	124	18.7073
....)....	chr2:54197790-54198049(-)$1	1	48	57	18.5853
)))).))))	chr21:47610630-47610942(-)$1	1	65	74	16.0243
)))))).))	chr1:150533100-150533343(+)$1	1	128	137	19.0731
....).)))	chr8:145032774-145033072(-)$1	1	219	228	18.0975
(((((..(.	chr1:27929968-27930300(-)$1	1	5	14	22.7317
)))).))))	chr3:23851852-23852198(+)$1	1	172	181	18.5853
.......((	chr9:126691945-126692268(-)$1	1	234	243	18.7073
))))))..)	chr1:1208155-1208446(-)$1	1	103	112	18.5853
(((((...(	chr19:55558632-55558918(+)$1	1	76	85	19.6829
((((((((.	chr19:1592468-1592843(-)$1	1	22	31	18.7073
).))))(((	chr19:1474574-1474864(-)$1	1	148	157	18.7073
).)..))((	chr3:195622238-195622623(-)$1	1	192	201	18.0975
.(((.....	chr7:100027501-100027786(+)$1	1	61	70	18.7073
.)).)).))	chr20:62331326-62331602(-)$1	1	198	207	18.3414
((((((.(.	chr19:1395163-1395471(+)$1	1	1	10	19.6829
)........	chr3:195635405-195635690(-)$1	1	107	116	18.5853
)))))))))	chr16:89762167-89762446(+)$1	1	243	252	18.2195
..((((.((	chr15:80214902-80215226(-)$1	1	25	34	18.2195
(((.((...	chr12:28343358-28343727(+)$1	1	208	217	18.7073
((.(((...	chr1:2326695-2327006(+)$1	1	33	42	19.6829
))).)))).	chr16:2138719-2139069(-)$1	1	152	161	19.6829
.).))))))	chr21:35445786-35446180(+)$1	1	370	379	18.5853
)))))))))	chr6:31730659-31730979(+)$1	1	104	113	19.6829
.........	chr6:117996610-117996880(+)$1	1	46	55	22.7317
((.(((.((	chr16:2871146-2871481(+)$1	1	105	114	22.7317
)))))).))	chr16:89663061-89663318(+)$1	1	200	209	19.6829
..)))).))	chr17:79878840-79879132(-)$1	1	202	211	17.9756
.........	chr6:117996568-117996810(+)$1	1	88	97	22.7317
)))))....	chr11:61583322-61583587(-)$1	1	44	53	18.7073
(((((.(((	chr19:54970904-54971185(+)$1	1	121	130	19.0731
((((((.((	chr21:47721047-47721331(-)$1	1	21	30	19.0731
.)))))).)	chr19:41882620-41882947(+)$1	1	256	265	19.0731
((((((..(	chr22:19431683-19432009(-)$1	1	29	38	18.9512

#PSSM
G : 0.78	g : 0.12	C : 0.07	A : 0.02	
G : 0.85	g : 0.09	u : 0.02	A : 0.02	
G : 0.75	g : 0.09	C : 0.09	U : 0.02	c : 0.02	
A : 0.65	U : 0.17	a : 0.12	C : 0.02	G : 0.02	
G : 0.82	g : 0.14	U : 0.02	
G : 0.75	g : 0.14	C : 0.09	
A : 0.75	a : 0.12	G : 0.04	U : 0.04	g : 0.02	
G : 0.80	g : 0.14	C : 0.02	A : 0.02	
G : 0.80	g : 0.14	U : 0.04	

#score	795.0487804878056
#seq	41
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_UTR_m1_run2.nuc.txt

#NT
uuuuuuuuuuuuuuuuuuuuuuu	chr2:192542928-192543188(+)$1	260	201	224	55.2264
uuuuuuuuuuuuuuuuuuuuuug	chr17:66418716-66418975(-)$1	259	81	104	58.1509
ugcuuguuuuuuucuuuuuuuug	chr19:8467487-8467707(+)$1	220	48	71	42.9622
UCAAUUUUUUUUUUUUUUUUUUg	chr2:101887896-101888169(-)$1	273	85	108	47.2075
UCGUCuucuuuuuuuuuuuuuug	chr14:23444938-23445157(-)$1	219	79	102	43.7169
aaugugcuuuuuuuuuuuuuuug	chr1:21101332-21101587(-)$1	255	82	105	38.3396
uuuuuuuuuuuuuuuuuuuuuuu	chr17:17115677-17115892(-)$1	215	77	100	55.2264
auuCCuuuuuuuuuuuuuuuuug	chr19:50376913-50377166(-)$1	253	84	107	46.8301
AUuuuuuuauuuuuauuuuuuuc	chr15:25219680-25219956(+)$1	276	83	106	42.0188
Cuucuuuuuuuuuuuuuuuuuug	chr22:41324116-41324375(+)$1	259	85	108	50.2264
uuuuuuuuuuuuuuuuuuuuuug	chr10:69828134-69828346(-)$1	212	81	104	58.1509
uuuuuuuuuuuuuuuuuuuuuuu	chr2:192543056-192543310(+)$1	254	73	96	55.2264
uuuuucuuuuuuuuuuuuuuuug	chr6:33269243-33269454(-)$1	211	82	105	53.8113
Guuuuuuauuuuuauuuuuuuug	chr3:196557672-196557926(+)$1	254	81	104	45.6037
uuuuuuuuuuguuuuuuguuuug	chr19:48984694-48984931(+)$1	237	55	78	49.8490
uguuuuuuguuuuuuuuuuuuua	chr19:5909405-5909619(+)$1	214	81	104	46.7358
uuuuuuuuuuuuuuuuuuuuuug	chr2:3520138-3520348(-)$1	210	81	104	58.1509
auggauuuuuuuuuuuuuuuuug	chr17:80214237-80214490(-)$1	253	82	105	43.5283
UUUuuuuuuuuuuuuuuuuuuug	chr12:69885201-69885451(+)$1	250	86	109	58.1509
uuuuguuuuguuuuguuuuuuug	chr9:94056682-94056936(-)$1	254	86	109	45.6037
uuuuuuuuuuuuuuuuuuuuuug	chr2:3520092-3520338(-)$1	246	71	94	58.1509
uucuuuuuuuguuuuuuguuuug	chr6:149980424-149980699(-)$1	275	83	106	46.7358
uuuuuuuuuuuuuuuuuuuuuuG	chr13:28867447-28867695(+)$1	248	84	107	58.1509
uucuuuuuuuuuuuuuuuuuuug	chr4:38945625-38945853(+)$1	228	61	84	55.0377
uuuuuuucuuuuuuccuuuuuuu	chr3:71293959-71294214(-)$1	255	76	99	42.1132
Uuuuuuuuuuuucuuuucuuuuu	chr7:44102784-44103063(+)$1	279	78	101	46.3584
UUUUUUUUUGUUUUUUUUUUUUG	chr13:20247146-20247355(+)$1	209	82	105	53.7169
uguuuuuuguuuuuuuuuuuuua	chr19:5909419-5909658(+)$1	239	67	90	46.7358
uucuuuuuuuuuuuuuuuuuuug	chr4:38945602-38945825(+)$1	223	84	107	55.0377
uuuuuuuuuuuuuuuuuuuuuug	chr10:72637484-72637739(+)$1	255	83	106	58.1509
uuuuuuuuuuuuuuuuuuuuuug	chr12:133348981-133349216(-)$1	235	65	88	58.1509
UAUGGAAuuuuuuuuuuuuuuug	chr1:245007914-245008169(-)$1	255	81	104	38.1509
uuuuuuuuuuuuuuuuuuuuuug	chr12:133349069-133349324(-)$1	255	173	196	58.1509
UCUUUUUUUUUUUUUUUUCCUUU	chr8:42396487-42396708(-)$1	221	29	52	42.3018
GUUGUAUUUUUUUUUUUUUAUUG	chr15:67486026-67486281(+)$1	255	0	23	41.8301
uuuuuuucuuuuuucuuuuuuuu	chr2:173461748-173462000(+)$1	252	76	99	46.9245
UCGUCuucuuuuuuuuuuuuuug	chr14:23444908-23445138(-)$1	230	60	83	43.7169
uucacuuuuuuuuuuuucuuuug	chrX:122736716-122736966(-)$1	250	85	108	43.3396
ucuuuucuuuuuuuuuuuuuuug	chr11:61133853-61134110(+)$1	257	83	106	50.2264
GUUuuuuguuuguuuuuguuuug	chr12:79978791-79979048(-)$1	257	85	108	41.4528
GGuuuuuuuuuuuuuuuuuuuug	chr2:36605862-36606123(+)$1	261	85	108	51.1698
uuuuuuuuuuuuuuuuuuuuuuc	chr6:158438354-158438601(+)$1	247	83	106	54.5660
uuguuuuuugguuuuuuuuuuug	chr7:48003353-48003605(-)$1	252	81	104	46.0754
uuuuuuuuuuuuuuuuuuuuuug	chr12:133349016-133349232(-)$1	216	81	104	58.1509
uucuuuuuuuuuuuuuuuuuuug	chr14:21928598-21928850(-)$1	252	83	106	55.0377
UUUUGUUUUUCUUUCUUAUUUUG	chr10:72186446-72186709(+)$1	263	62	85	41.4528
uuuuuuuuuuuuuuuuuuuuuuu	chr11:62360729-62361019(-)$1	290	81	104	55.2264
uuuuuuuuuuuuuuuuuuuuuuu	chr17:17115619-17115877(-)$1	258	62	85	55.2264
GUGAAuuuuuuuuuuuuuuuuug	chr12:125610417-125610674(+)$1	257	81	104	43.5283
uuuuguuuauuuguuuuguuuug	chr6:31725362-31725621(+)$1	259	85	108	41.3584
ugcuuguuuuuuucuuuuuuuug	chr19:8467452-8467687(+)$1	235	83	106	42.9622
uuuuuuuuuuuuuuuuuuuuuuG	chr15:99192583-99192826(+)$1	243	173	196	58.1509

#otherMatches

#Struct PSSM
========::::::::::JJJJJ	chr12:1021754-1021992(-)$1	238	82	105	58.1509
g^^^^^^^^^^^^^^^^^^^^^^	chr2:192542928-192543188(+)$1	260	201	224	55.2264
::::::::::::::::::::eee	chr17:66418716-66418975(-)$1	259	81	104	58.1509
hhhhhh::::::::::::::::c	chr19:8467487-8467707(+)$1	220	48	71	42.9622
2dddd333ggggggg:::::eee	chr2:101887896-101888169(-)$1	273	85	108	47.2075
d[a[dddd[ddddrrrrrrrrrd	chr14:23444938-23445157(-)$1	219	79	102	43.7169
f]==========]bb7777777c	chr1:21101332-21101587(-)$1	255	82	105	38.3396
ddd::::::::::::eeeeeooo	chr17:17115677-17115892(-)$1	215	77	100	55.2264
oobbhhhhhhhh]ggggggg::c	chr19:50376913-50377166(-)$1	253	84	107	46.8301
gg:::::JJJJJJJJJJJJJFFF	chr15:25219680-25219956(+)$1	276	83	106	42.0188
::::::::::::::::::::::b	chr22:41324116-41324375(+)$1	259	85	108	50.2264
++++++++++++++++++++++a	chr10:69828134-69828346(-)$1	212	81	104	58.1509
f^^^^^^^^^^^^^^^^^^^^^^	chr2:192543056-192543310(+)$1	254	73	96	55.2264
oooffffff::::::::::::ff	chr6:33269243-33269454(-)$1	211	82	105	53.8113
ggggggg]dddd]bb333fffff	chr3:196557672-196557926(+)$1	254	81	104	45.6037
:::::::::::::::::::::::	chr19:48984694-48984931(+)$1	237	55	78	49.8490
iiiiiiyyyyyyyyyyyyyyyyi	chr19:5909405-5909619(+)$1	214	81	104	46.7358
^^^^^^^^^^^^^^^^^^^^^^e	chr2:3520138-3520348(-)$1	210	81	104	58.1509
gggg:::::::::::::::::::	chr17:80214237-80214490(-)$1	253	82	105	43.5283
^^^^^^^^^^^^^^^^^^^^^cc	chr12:69885201-69885451(+)$1	250	86	109	58.1509
iiii]bb]bb]dddd::::::::	chr9:94056682-94056936(-)$1	254	86	109	45.6037
^^^^^^^^^^^^^^^^^^^^^^f	chr2:3520092-3520338(-)$1	246	71	94	58.1509
:::::::::::::::::::::::	chr6:149980424-149980699(-)$1	275	83	106	46.7358
==::::::::::::::::dddd[	chr13:28867447-28867695(+)$1	248	84	107	58.1509
:::::::::::::::::::::::	chr4:38945625-38945853(+)$1	228	61	84	55.0377
:::::::::::::::::::::::	chr3:71293959-71294214(-)$1	255	76	99	42.1132
a::::::::::::::::::::::	chr7:44102784-44103063(+)$1	279	78	101	46.3584
JJ:::::::gggggggoooooog	chr13:20247146-20247355(+)$1	209	82	105	53.7169
iiiiiiyyyyyyyyyyyyyyyyi	chr19:5909419-5909658(+)$1	239	67	90	46.7358
:::::::::::::::::::::::	chr4:38945602-38945825(+)$1	223	84	107	55.0377
::::::::::::::::::::eee	chr10:72637484-72637739(+)$1	255	83	106	58.1509
::::::::::::::::::::eee	chr12:133348981-133349216(-)$1	235	65	88	58.1509
ee[bb[dddd))))))))))eee	chr1:245007914-245008169(-)$1	255	81	104	38.1509
iiii^^^^^^^^^^^^^^^^^^i	chr12:133349069-133349324(-)$1	255	173	196	58.1509
C::::::::::::::::::ffff	chr8:42396487-42396708(-)$1	221	29	52	42.3018
::::::::::::::::::ggggg	chr15:67486026-67486281(+)$1	255	0	23	41.8301
dddd]ggggggg22eeeee22bb	chr2:173461748-173462000(+)$1	252	76	99	46.9245
d[a[dddd[ddddrrrrrrrrrd	chr14:23444908-23445138(-)$1	230	60	83	43.7169
:::::::::::::::::::::::	chrX:122736716-122736966(-)$1	250	85	108	43.3396
:::::::::::::::::::::::	chr11:61133853-61134110(+)$1	257	83	106	50.2264
nnccc]bb]iiiiiiiii333ee	chr12:79978791-79979048(-)$1	257	85	108	41.4528
]bb333dddd22eeeee22eeee	chr2:36605862-36606123(+)$1	261	85	108	51.1698
>>>>>>>>>>>>>>>>>>>>>>>	chr6:158438354-158438601(+)$1	247	83	106	54.5660
GGGLLLEEEEE:::::::::ccc	chr7:48003353-48003605(-)$1	252	81	104	46.0754
::::::::::::::::::::eee	chr12:133349016-133349232(-)$1	216	81	104	58.1509
^^^^^^^^^^^^^^^ccc]dddd	chr14:21928598-21928850(-)$1	252	83	106	55.0377
dddd333eeeeeGGGGGGGffff	chr10:72186446-72186709(+)$1	263	62	85	41.4528
g>>>>>>>>>>>>>>>>>>>>==	chr11:62360729-62361019(-)$1	290	81	104	55.2264
ddd::::::::::::eeeeeooo	chr17:17115619-17115877(-)$1	258	62	85	55.2264
ccc]dddd]dddd:::::::hhh	chr12:125610417-125610674(+)$1	257	81	104	43.5283
::::::::::::eeeeennnnne	chr6:31725362-31725621(+)$1	259	85	108	41.3584
YBB:::::::::::::::::::b	chr19:8467452-8467687(+)$1	235	83	106	42.9622
^^^^^^^^^^^^^^^^^^^^^^=	chr15:99192583-99192826(+)$1	243	173	196	58.1509

#DB
))))))))..........)))))	chr12:1021754-1021992(-)$1	1	82	105	58.1509
(......................	chr2:192542928-192543188(+)$1	1	201	224	55.2264
....................(((	chr17:66418716-66418975(-)$1	1	81	104	58.1509
))))))................(	chr19:8467487-8467707(+)$1	1	48	71	42.9622
.))))...))))))).....(((	chr2:101887896-101888169(-)$1	1	85	108	47.2075
(.(.((((.((((.........)	chr14:23444938-23445157(-)$1	1	79	102	43.7169
).)))))))))).)).......)	chr1:21101332-21101587(-)$1	1	82	105	38.3396
)))............(((((...	chr17:17115677-17115892(-)$1	1	77	100	55.2264
..)))))))))).)))))))..(	chr19:50376913-50377166(-)$1	1	84	107	46.8301
)).....))))))))))))))))	chr15:25219680-25219956(+)$1	1	83	106	42.0188
......................(	chr22:41324116-41324375(+)$1	1	85	108	50.2264
......................(	chr10:69828134-69828346(-)$1	1	81	104	58.1509
(......................	chr2:192543056-192543310(+)$1	1	73	96	55.2264
...))))))............((	chr6:33269243-33269454(-)$1	1	82	105	53.8113
))))))).)))).))...)))))	chr3:196557672-196557926(+)$1	1	81	104	45.6037
.......................	chr19:48984694-48984931(+)$1	1	55	78	49.8490
((((((................)	chr19:5909405-5909619(+)$1	1	81	104	46.7358
......................)	chr2:3520138-3520348(-)$1	1	81	104	58.1509
))))...................	chr17:80214237-80214490(-)$1	1	82	105	43.5283
.....................))	chr12:69885201-69885451(+)$1	1	86	109	58.1509
)))).)).)).))))........	chr9:94056682-94056936(-)$1	1	86	109	45.6037
......................)	chr2:3520092-3520338(-)$1	1	71	94	58.1509
.......................	chr6:149980424-149980699(-)$1	1	83	106	46.7358
))................((((.	chr13:28867447-28867695(+)$1	1	84	107	58.1509
.......................	chr4:38945625-38945853(+)$1	1	61	84	55.0377
.......................	chr3:71293959-71294214(-)$1	1	76	99	42.1132
)......................	chr7:44102784-44103063(+)$1	1	78	101	46.3584
((.......(((((((......)	chr13:20247146-20247355(+)$1	1	82	105	53.7169
((((((................)	chr19:5909419-5909658(+)$1	1	67	90	46.7358
.......................	chr4:38945602-38945825(+)$1	1	84	107	55.0377
....................(((	chr10:72637484-72637739(+)$1	1	83	106	58.1509
....................(((	chr12:133348981-133349216(-)$1	1	65	88	58.1509
((.((.((((..........(((	chr1:245007914-245008169(-)$1	1	81	104	38.1509
((((..................)	chr12:133349069-133349324(-)$1	1	173	196	58.1509
(..................((((	chr8:42396487-42396708(-)$1	1	29	52	42.3018
..................(((((	chr15:67486026-67486281(+)$1	1	0	23	41.8301
)))).)))))))..)))))..))	chr2:173461748-173462000(+)$1	1	76	99	46.9245
(.(.((((.((((.........)	chr14:23444908-23445138(-)$1	1	60	83	43.7169
.......................	chrX:122736716-122736966(-)$1	1	85	108	43.3396
.......................	chr11:61133853-61134110(+)$1	1	83	106	50.2264
..))).)).)))))))))...))	chr12:79978791-79979048(-)$1	1	85	108	41.4528
.))...))))..)))))..))))	chr2:36605862-36606123(+)$1	1	85	108	51.1698
.......................	chr6:158438354-158438601(+)$1	1	83	106	54.5660
(((...(((((.........(((	chr7:48003353-48003605(-)$1	1	81	104	46.0754
....................(((	chr12:133349016-133349232(-)$1	1	81	104	58.1509
...............))).))))	chr14:21928598-21928850(-)$1	1	83	106	55.0377
))))...))))))))))))((((	chr10:72186446-72186709(+)$1	1	62	85	41.4528
)....................))	chr11:62360729-62361019(-)$1	1	81	104	55.2264
)))............(((((...	chr17:17115619-17115877(-)$1	1	62	85	55.2264
))).)))).)))).......(((	chr12:125610417-125610674(+)$1	1	81	104	43.5283
............(((((.....)	chr6:31725362-31725621(+)$1	1	85	108	41.3584
.))...................(	chr19:8467452-8467687(+)$1	1	83	106	42.9622
......................)	chr15:99192583-99192826(+)$1	1	173	196	58.1509

#PSSM
u : 0.64	U : 0.16	G : 0.09	a : 0.05	A : 0.01	C : 0.01	
u : 0.64	U : 0.13	g : 0.07	C : 0.07	a : 0.01	A : 0.01	c : 0.01	G : 0.01	
u : 0.62	c : 0.13	U : 0.13	G : 0.05	g : 0.03	A : 0.01	
u : 0.73	U : 0.09	A : 0.03	g : 0.03	G : 0.03	C : 0.01	c : 0.01	a : 0.01	
u : 0.73	U : 0.07	C : 0.05	g : 0.03	G : 0.03	a : 0.01	c : 0.01	A : 0.01	
u : 0.81	U : 0.07	g : 0.05	A : 0.03	c : 0.01	
u : 0.84	U : 0.09	c : 0.03	A : 0.01	
u : 0.79	U : 0.09	c : 0.07	a : 0.01	g : 0.01	
u : 0.83	U : 0.09	a : 0.03	g : 0.03	
u : 0.86	U : 0.07	g : 0.03	G : 0.01	
u : 0.84	U : 0.07	g : 0.05	C : 0.01	
u : 0.88	U : 0.09	g : 0.01	
u : 0.86	U : 0.09	c : 0.01	g : 0.01	
u : 0.84	U : 0.09	c : 0.03	a : 0.01	
u : 0.83	U : 0.07	c : 0.03	a : 0.01	g : 0.01	C : 0.01	
u : 0.88	U : 0.09	c : 0.01	
u : 0.90	U : 0.09	
u : 0.79	U : 0.07	g : 0.07	c : 0.03	A : 0.01	
u : 0.90	U : 0.07	C : 0.01	
u : 0.90	U : 0.05	C : 0.01	A : 0.01	
u : 0.90	U : 0.09	
u : 0.90	U : 0.09	
g : 0.66	u : 0.15	G : 0.09	c : 0.03	a : 0.03	U : 0.01	

#score	2640.207547169813
#seq	53
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_CDS_m1_run2.nuc.txt

#NT
GCGUGCGCAGGCGGGCGGAGGGGGAGGAAGUGCGCGCGCUC	chrX:41193769-41194027(+)$1	258	21	62	27.1176
ggUCGGGGGAGGGGCCGGGCGGGGGGCUGGCGGCAGCGGCG	chr6:43596691-43596967(-)$1	276	26	67	35.9411
ccGACGGUGUCGGGGAggcggcggcggcggcggccgccccc	chr20:307084-307319(-)$1	235	84	125	28.8823
gggucugggggccggggccggggcgggcgAGGAGAGCCCCG	chr4:129208545-129208830(-)$1	285	118	159	28.5882
CGGGCCGGGGAGCGGCGGGGGCGGUGACGCAGGCCGGACAC	chr5:179248031-179248276(+)$1	245	115	156	32.1176
CGGCGCGGAGGAAGGAgccggcggcgcggggggcagcgcgg	chr19:5719720-5720101(-)$1	381	221	262	36.5294
ggguggcggggcuggcggggccggggccggggccggcugcg	chr4:79697703-79697963(+)$1	260	50	91	38.0000
UGGGCCGGGGUGGGGCGGGAUGGGAGAUGGGGUCUGGAGGG	chr19:18547577-18547844(-)$1	267	75	116	29.7647
ggggccggggaggguucgggugggaggggguggggggggug	chr2:54197735-54197984(-)$1	249	11	52	28.0000
GGGCGCGGGUGCCAGCUGCGGUUGUGGGGGAGCCCGCGGGG	chr19:2270490-2270716(+)$1	226	110	151	35.9411
GGGCGCGGGUGCCAGCUGCGGUUGUGGGGGAGCCCGCGGGG	chr19:2270420-2270667(+)$1	247	180	221	35.9411
GGGCCGGGAGGCUCCGGGCCCcgcgggcgguggcgguggcg	chr19:12845210-12845482(-)$1	272	43	84	28.0000
GAGCCCggagaggggugggggccggggaggguucggguggg	chr2:54197784-54198040(-)$1	256	50	91	28.0000
GGGGCGACGGGUGAgcggcggcgcggcgggcgggcgacugc	chr9:101867477-101867761(+)$1	284	97	138	27.4117
Ugggcggcgcggcggggggcgcggcgcugcuggccgcgggg	chr19:10406935-10407178(+)$1	243	100	141	33.8823
gggcccggaggcgggcgccggcggggcugggggccgcgcgg	chr7:158621823-158622195(-)$1	372	106	147	49.4705

#otherMatches

#Struct PSSM
g[bb!!ccc!!a[ccc[dddd!!aooooooa22dddd]ccc	chr7:77166711-77166970(+)$1	259	95	136	34.4705
BB{CCC{DDDDALLLDDDD{DDDDCCCKKDDDDJJJJJJJJ	chrX:41193769-41194027(+)$1	258	21	62	27.1176
::GGGGGGG:::hhhhhhhh"""==============[bbf	chr6:43596691-43596967(-)$1	276	26	67	35.9411
nccc]bb]eeeeeeeeee]bb]============:::::::	chr20:307084-307319(-)$1	235	84	125	28.8823
ggggg55555eeeee]dddd]a333ccc]bb]a333ggggg	chr4:129208545-129208830(-)$1	285	118	159	28.5882
ddd:JJJJJJJJJJJJIIIIIIIII{BB::ffffffmmmmf	chr5:179248031-179248276(+)$1	245	115	156	32.1176
eeee:A}DDDD}EEEEEYYDDDD}FFFFFF:eeeee[dddd	chr19:5719720-5720101(-)$1	381	221	262	36.5294
]a]bb]bbffffff[hhhhhhhh[eeeeemmmmeeeee]hh	chr4:79697703-79697963(+)$1	260	50	91	38.0000
bbggggggg!!a[iiiiiiiii''''''''ggggggg[ggg	chr19:18547577-18547844(-)$1	267	75	116	29.7647
:BB{DDDDLLLEEEEE{A{BBKKBB:ccc[a[eeeeemmmm	chr2:54197735-54197984(-)$1	249	11	52	28.0000
JJJJJJJJ::::ddddmmmmddddiiiiiiiii[bba[ann	chr19:2270490-2270716(+)$1	226	110	151	35.9411
ddd]bbGGGGGGGYYEEEEEYYEEEEE~~~~EEEEEYYA}G	chr19:2270420-2270667(+)$1	247	180	221	35.9411
qqqqqqqiiiiiiiii:::eeeee[a[bbmmmmbb]a]eee	chr19:12845210-12845482(-)$1	272	43	84	28.0000
22dddd7777777a]ccc]dddd]a:::::ffffff[ccc"	chr2:54197784-54198040(-)$1	256	50	91	28.0000
d22dddd]ccc]ggggggg:bb[ffffff[bb!!ccceeee	chr9:101867477-101867761(+)$1	284	97	138	27.4117
EEEEEeeeee[cccnnnnnccc]eeeeegggggggnnnnng	chr19:10406935-10407178(+)$1	243	100	141	33.8823
fffff!!eeeeeaccc!!ffffff[ffffffabb[eeeeed	chr7:158621823-158622195(-)$1	372	106	147	49.4705

#DB
(.((..(((..(.(((.((((..(......)..)))).)))	chr7:77166711-77166970(+)$1	1	95	136	34.4705
((.(((.(((((...((((.(((((((..((((((((((((	chrX:41193769-41194027(+)$1	1	21	62	27.1176
..(((((((...((((((((...((((((((((((((.(((	chr6:43596691-43596967(-)$1	1	26	67	35.9411
.))).)).)))))))))).)).)))))))))))).......	chr20:307084-307319(-)$1	1	84	125	28.8823
))))).....))))).)))).)...))).)).)...)))))	chr4:129208545-129208830(-)$1	1	118	159	28.5882
))).(((((((((((((((((((((.((..((((((....)	chr5:179248031-179248276(+)$1	1	115	156	32.1176
)))).).)))).)))))..)))).)))))).(((((.((((	chr19:5719720-5720101(-)$1	1	221	262	36.5294
.).)).))((((((.((((((((.(((((....))))).))	chr4:79697703-79697963(+)$1	1	50	91	38.0000
))(((((((..(.(((((((((........(((((((.(((	chr19:18547577-18547844(-)$1	1	75	116	29.7647
.((.((((...(((((.(.((..((.(((.(.(((((....	chr2:54197735-54197984(-)$1	1	11	52	28.0000
((((((((....((((....))))(((((((((.(((.(..	chr19:2270490-2270716(+)$1	1	110	151	35.9411
))).)))))))))..)))))..)))))....)))))..).)	chr19:2270420-2270667(+)$1	1	180	221	35.9411
.......)))))))))...(((((.(.((....)).).)))	chr19:12845210-12845482(-)$1	1	43	84	28.0000
..)))).......).))).)))).).....((((((.(((.	chr2:54197784-54198040(-)$1	1	50	91	28.0000
)..)))).))).))))))).((.((((((.((..(((((((	chr9:101867477-101867761(+)$1	1	97	138	27.4117
((((((((((.(((.....))).)))))(((((((.....)	chr19:10406935-10407178(+)$1	1	100	141	33.8823
(((((..(((((((((..((((((.(((((((((.((((((	chr7:158621823-158622195(-)$1	1	106	147	49.4705

#PSSM
G : 0.35	g : 0.29	U : 0.17	C : 0.11	c : 0.05	
g : 0.41	G : 0.41	C : 0.05	c : 0.05	A : 0.05	
G : 0.58	g : 0.29	c : 0.05	U : 0.05	
C : 0.35	G : 0.17	c : 0.11	u : 0.11	g : 0.11	U : 0.05	A : 0.05	
C : 0.35	G : 0.29	c : 0.23	g : 0.11	
C : 0.41	G : 0.23	g : 0.17	c : 0.11	u : 0.05	
G : 0.52	g : 0.35	c : 0.05	A : 0.05	
G : 0.41	g : 0.29	c : 0.11	C : 0.11	U : 0.05	
G : 0.41	g : 0.29	A : 0.17	a : 0.11	
g : 0.35	G : 0.35	U : 0.17	A : 0.05	c : 0.05	
G : 0.41	g : 0.29	a : 0.11	C : 0.05	A : 0.05	U : 0.05	
c : 0.23	C : 0.23	G : 0.23	g : 0.17	A : 0.05	U : 0.05	
G : 0.29	g : 0.23	C : 0.17	c : 0.11	A : 0.05	u : 0.05	U : 0.05	
g : 0.41	G : 0.35	A : 0.17	C : 0.05	
g : 0.41	G : 0.41	C : 0.11	u : 0.05	
C : 0.35	c : 0.23	A : 0.11	g : 0.11	u : 0.11	G : 0.05	
g : 0.52	G : 0.29	U : 0.11	c : 0.05	
g : 0.41	G : 0.41	c : 0.17	
c : 0.35	g : 0.23	G : 0.17	C : 0.17	A : 0.05	
g : 0.52	G : 0.23	C : 0.11	A : 0.05	c : 0.05	
g : 0.47	G : 0.29	c : 0.05	U : 0.05	u : 0.05	C : 0.05	
c : 0.47	g : 0.17	G : 0.17	U : 0.11	C : 0.05	
g : 0.58	G : 0.23	U : 0.11	c : 0.05	
g : 0.47	G : 0.35	c : 0.17	
g : 0.41	c : 0.17	U : 0.17	A : 0.11	G : 0.05	a : 0.05	
g : 0.64	G : 0.35	
c : 0.35	g : 0.29	G : 0.17	A : 0.11	C : 0.05	
c : 0.29	g : 0.17	U : 0.11	G : 0.11	u : 0.11	A : 0.05	C : 0.05	a : 0.05	
g : 0.58	G : 0.29	A : 0.11	
g : 0.47	G : 0.35	A : 0.05	C : 0.05	c : 0.05	
g : 0.23	A : 0.17	u : 0.17	C : 0.11	c : 0.11	G : 0.11	U : 0.05	
G : 0.47	g : 0.47	u : 0.05	
g : 0.41	C : 0.17	A : 0.11	G : 0.11	c : 0.05	U : 0.05	u : 0.05	
c : 0.41	C : 0.35	G : 0.11	g : 0.11	
C : 0.29	c : 0.23	g : 0.23	A : 0.11	a : 0.05	U : 0.05	
g : 0.52	G : 0.47	
C : 0.35	c : 0.29	G : 0.11	g : 0.11	u : 0.05	a : 0.05	
g : 0.29	G : 0.23	A : 0.17	c : 0.11	u : 0.11	C : 0.05	
G : 0.29	g : 0.29	C : 0.17	c : 0.17	u : 0.05	
g : 0.29	C : 0.17	c : 0.17	G : 0.17	U : 0.05	A : 0.05	u : 0.05	
g : 0.41	G : 0.29	C : 0.17	c : 0.11	

#score	558.0588235294125
#seq	17
#width	41
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_CDS_m2_run1.nuc.txt

#NT
CCUCC	chr12:49434164-49434463(-)$1	299	75	80	15.0000
CCUCC	chr19:36277586-36277865(+)$1	279	54	59	15.0000
CCUCC	chr11:65660317-65660590(-)$1	273	88	93	15.0000
CCUCC	chrM:3395-3638(+)$1	243	175	180	15.0000
CCUCC	chr3:47048489-47048857(+)$1	368	227	232	15.0000
CCUCC	chr19:11465297-11465586(+)$1	289	83	88	15.0000
CCUCC	chr12:57919139-57919446(+)$1	307	50	55	15.0000
ccucc	chr19:6745913-6746232(+)$1	319	40	45	15.0000
CCUCC	chr14:55529460-55529818(+)$1	358	32	37	15.0000
CCUCC	chr6:30672690-30672971(-)$1	281	18	23	15.0000
CCUCC	chr1:155160968-155161193(-)$1	225	183	188	15.0000
CCUCC	chr12:7045874-7046115(+)$1	241	83	88	15.0000
CCUCC	chr17:27212857-27213129(-)$1	272	113	118	15.0000
CCUCC	chr8:145065324-145065577(+)$1	253	109	114	15.0000
CCUCC	chrM:8347-8560(+)$1	213	124	129	15.0000
ccucc	chr17:7416599-7416924(+)$1	325	172	177	15.0000
CCUCC	chr19:2248135-2248404(+)$1	269	26	31	15.0000
CCUCC	chr12:57111275-57111544(-)$1	269	41	46	15.0000
CCUCC	chr20:43560953-43561219(+)$1	266	29	34	15.0000
CCUCC	chr17:4848114-4848459(+)$1	345	99	104	15.0000
CCUCC	chr9:139728249-139728573(+)$1	324	77	82	15.0000
CCUCC	chrM:10855-11064(+)$1	209	74	79	15.0000
CCUCC	chr19:2247802-2248057(+)$1	255	13	18	15.0000
CCUCC	chr6:32160157-32160445(-)$1	288	102	107	15.0000
CCUCC	chr1:8420645-8420957(-)$1	312	9	14	15.0000
CCUCC	chr12:57112980-57113221(-)$1	241	140	145	15.0000
CCUCC	chr11:72534613-72534928(+)$1	315	145	150	15.0000
CCUCC	chr6:30617510-30617809(+)$1	299	10	15	15.0000
CCUCC	chr1:39879454-39879824(+)$1	370	30	35	15.0000
CCUCC	chr12:122260615-122260938(+)$1	323	132	137	15.0000
CCUCC	chr13:39587615-39587905(-)$1	290	252	257	15.0000
CCUCC	chr19:54656763-54657072(+)$1	309	91	96	15.0000
ccucc	chr6:35260171-35260442(+)$1	271	53	58	15.0000
CCUCC	chr19:807719-807975(+)$1	256	118	123	15.0000
CCUCC	chr16:28877616-28877912(+)$1	296	194	199	15.0000
ccucc	chr5:138941215-138941514(+)$1	299	152	157	15.0000
CCUCC	chr1:8420260-8420500(-)$1	240	5	10	15.0000
CCUCC	chr12:7045482-7045752(+)$1	270	25	30	15.0000
CCUCC	chr11:64533216-64533538(-)$1	322	72	77	15.0000
CCUCC	chr12:53848427-53848688(+)$1	261	49	54	15.0000
CCUCC	chr16:24942145-24942471(-)$1	326	54	59	15.0000
CCUCC	chr5:133984626-133984915(+)$1	289	51	56	15.0000
CCUCC	chr7:143079950-143080277(+)$1	327	33	38	15.0000
CCUCC	chr1:150526087-150526383(+)$1	296	22	27	15.0000
CCUCC	chr19:16940321-16940720(+)$1	399	47	52	15.0000
ccucc	chr12:7045613-7045884(+)$1	271	3	8	15.0000
CCUCC	chr19:2248204-2248452(+)$1	248	41	46	15.0000
CCUCC	chr12:57111024-57111260(-)$1	236	7	12	15.0000
CCUCC	chr12:57111120-57111465(-)$1	345	31	36	15.0000
CCUCC	chr16:88791381-88791712(-)$1	331	175	180	15.0000
CCUCC	chr12:120653752-120654047(-)$1	295	73	78	15.0000
CCUCC	chr12:57112109-57112371(-)$1	262	34	39	15.0000
CCUCC	chr6:41545495-41545827(+)$1	332	190	195	15.0000
CCUCC	chrX:140994928-140995248(+)$1	320	56	61	15.0000
CCUCC	chr14:55529660-55529982(+)$1	322	185	190	15.0000
ccucc	chr17:80708447-80708700(+)$1	253	194	199	15.0000
CCUCC	chr12:57114938-57115206(-)$1	268	24	29	15.0000
CCUCC	chr16:30675494-30675753(+)$1	259	1	6	15.0000
CCUCC	chr19:36278799-36279065(+)$1	266	17	22	15.0000
CCUCC	chr5:31526541-31526849(-)$1	308	26	31	15.0000
CCUCC	chr16:30734943-30735236(+)$1	293	15	20	15.0000
CCUCC	chr19:7706667-7707026(+)$1	359	240	245	15.0000
CCUCC	chr1:27736227-27736480(-)$1	253	45	50	15.0000
CCUCC	chr11:45986879-45987185(-)$1	306	77	82	15.0000
CCUCC	chr8:144351338-144351721(+)$1	383	57	62	15.0000
CCUCC	chr18:34376603-34376903(-)$1	300	68	73	15.0000
ccucc	chr12:7045552-7045813(+)$1	261	31	36	15.0000
CCUCC	chr9:131016797-131017084(+)$1	287	7	12	15.0000
CCUCC	chr3:47452260-47452592(+)$1	332	157	162	15.0000
CCUCC	chrM:3445-3702(+)$1	257	125	130	15.0000
CCUCC	chr16:67576593-67576992(+)$1	399	4	9	15.0000
CCUCC	chr12:7046029-7046386(+)$1	357	1	6	15.0000
CCUCC	chr12:57112179-57112438(-)$1	259	32	37	15.0000
CCUCC	chr3:47451498-47451806(+)$1	308	30	35	15.0000
CCUCC	chr3:9798500-9798868(+)$1	368	18	23	15.0000
CCUCC	chr16:30734845-30735143(+)$1	298	113	118	15.0000
CCUCC	chr12:122618002-122618329(+)$1	327	4	9	15.0000
CCUCC	chr6:30672916-30673191(-)$1	275	115	120	15.0000
CCUCC	chrM:8377-8591(+)$1	214	94	99	15.0000
CCUCC	chrM:6308-6536(+)$1	228	17	22	15.0000
CCUCC	chr2:242694645-242695032(+)$1	387	1	6	15.0000

#otherMatches

#Struct PSSM
:DDDD	chr22:51019873-51020144(-)$1	271	3	8	15.0000
sssss	chr12:49434164-49434463(-)$1	299	75	80	15.0000
:DDDD	chr19:36277586-36277865(+)$1	279	54	59	15.0000
^^^^^	chr11:65660317-65660590(-)$1	273	88	93	15.0000
:::::	chrM:3395-3638(+)$1	243	175	180	15.0000
Ccccc	chr3:47048489-47048857(+)$1	368	227	232	15.0000
33ddd	chr19:11465297-11465586(+)$1	289	83	88	15.0000
+++++	chr12:57919139-57919446(+)$1	307	50	55	15.0000
:::::	chr19:6745913-6746232(+)$1	319	40	45	15.0000
qqqqq	chr14:55529460-55529818(+)$1	358	32	37	15.0000
%%%%%	chr6:30672690-30672971(-)$1	281	18	23	15.0000
d::::	chr1:155160968-155161193(-)$1	225	183	188	15.0000
rrrrr	chr12:7045874-7046115(+)$1	241	83	88	15.0000
:::::	chr17:27212857-27213129(-)$1	272	113	118	15.0000
vvvvv	chr8:145065324-145065577(+)$1	253	109	114	15.0000
:::::	chrM:8347-8560(+)$1	213	124	129	15.0000
zzzzz	chr17:7416599-7416924(+)$1	325	172	177	15.0000
offff	chr19:2248135-2248404(+)$1	269	26	31	15.0000
::::e	chr12:57111275-57111544(-)$1	269	41	46	15.0000
iiipp	chr20:43560953-43561219(+)$1	266	29	34	15.0000
HHHHH	chr17:4848114-4848459(+)$1	345	99	104	15.0000
nnngg	chr9:139728249-139728573(+)$1	324	77	82	15.0000
:::::	chrM:10855-11064(+)$1	209	74	79	15.0000
dd:::	chr19:2247802-2248057(+)$1	255	13	18	15.0000
fff""	chr6:32160157-32160445(-)$1	288	102	107	15.0000
EEE::	chr1:8420645-8420957(-)$1	312	9	14	15.0000
88888	chr12:57112980-57113221(-)$1	241	140	145	15.0000
::::F	chr11:72534613-72534928(+)$1	315	145	150	15.0000
bb]bb	chr6:30617510-30617809(+)$1	299	10	15	15.0000
d::::	chr1:39879454-39879824(+)$1	370	30	35	15.0000
f::::	chr12:122260615-122260938(+)$1	323	132	137	15.0000
CC}DD	chr13:39587615-39587905(-)$1	290	252	257	15.0000
dddd:	chr19:54656763-54657072(+)$1	309	91	96	15.0000
:::::	chr6:35260171-35260442(+)$1	271	53	58	15.0000
:::::	chr19:807719-807975(+)$1	256	118	123	15.0000
cc]cc	chr16:28877616-28877912(+)$1	296	194	199	15.0000
BCCC_	chr5:138941215-138941514(+)$1	299	152	157	15.0000
dd[bb	chr1:8420260-8420500(-)$1	240	5	10	15.0000
::::c	chr12:7045482-7045752(+)$1	270	25	30	15.0000
ooood	chr11:64533216-64533538(-)$1	322	72	77	15.0000
i22cc	chr12:53848427-53848688(+)$1	261	49	54	15.0000
sssss	chr16:24942145-24942471(-)$1	326	54	59	15.0000
B{JJJ	chr5:133984626-133984915(+)$1	289	51	56	15.0000
b::::	chr7:143079950-143080277(+)$1	327	33	38	15.0000
dddd(	chr1:150526087-150526383(+)$1	296	22	27	15.0000
gg$$$	chr19:16940321-16940720(+)$1	399	47	52	15.0000
:::::	chr12:7045613-7045884(+)$1	271	3	8	15.0000
:::::	chr19:2248204-2248452(+)$1	248	41	46	15.0000
fffff	chr12:57111024-57111260(-)$1	236	7	12	15.0000
eeeee	chr12:57111120-57111465(-)$1	345	31	36	15.0000
qqqqq	chr16:88791381-88791712(-)$1	331	175	180	15.0000
:::::	chr12:120653752-120654047(-)$1	295	73	78	15.0000
::::e	chr12:57112109-57112371(-)$1	262	34	39	15.0000
eee[a	chr6:41545495-41545827(+)$1	332	190	195	15.0000
KCCC{	chrX:140994928-140995248(+)$1	320	56	61	15.0000
:::::	chr14:55529660-55529982(+)$1	322	185	190	15.0000
:::::	chr17:80708447-80708700(+)$1	253	194	199	15.0000
:::::	chr12:57114938-57115206(-)$1	268	24	29	15.0000
:::::	chr16:30675494-30675753(+)$1	259	1	6	15.0000
eeooo	chr19:36278799-36279065(+)$1	266	17	22	15.0000
:::::	chr5:31526541-31526849(-)$1	308	26	31	15.0000
CCNNN	chr16:30734943-30735236(+)$1	293	15	20	15.0000
CCCdd	chr19:7706667-7707026(+)$1	359	240	245	15.0000
:::::	chr1:27736227-27736480(-)$1	253	45	50	15.0000
:::::	chr11:45986879-45987185(-)$1	306	77	82	15.0000
:::::	chr8:144351338-144351721(+)$1	383	57	62	15.0000
emmmm	chr18:34376603-34376903(-)$1	300	68	73	15.0000
^^^^^	chr12:7045552-7045813(+)$1	261	31	36	15.0000
FF:::	chr9:131016797-131017084(+)$1	287	7	12	15.0000
333dd	chr3:47452260-47452592(+)$1	332	157	162	15.0000
:::::	chrM:3445-3702(+)$1	257	125	130	15.0000
:::::	chr16:67576593-67576992(+)$1	399	4	9	15.0000
ccnnn	chr12:7046029-7046386(+)$1	357	1	6	15.0000
::::e	chr12:57112179-57112438(-)$1	259	32	37	15.0000
qqqqq	chr3:47451498-47451806(+)$1	308	30	35	15.0000
mmmag	chr3:9798500-9798868(+)$1	368	18	23	15.0000
:::cc	chr16:30734845-30735143(+)$1	298	113	118	15.0000
D::::	chr12:122618002-122618329(+)$1	327	4	9	15.0000
:dddd	chr6:30672916-30673191(-)$1	275	115	120	15.0000
:::::	chrM:8377-8591(+)$1	214	94	99	15.0000
:::::	chrM:6308-6536(+)$1	228	17	22	15.0000
:DDDD	chr2:242694645-242695032(+)$1	387	1	6	15.0000

#DB
.((((	chr22:51019873-51020144(-)$1	1	3	8	15.0000
.....	chr12:49434164-49434463(-)$1	1	75	80	15.0000
.((((	chr19:36277586-36277865(+)$1	1	54	59	15.0000
.....	chr11:65660317-65660590(-)$1	1	88	93	15.0000
.....	chrM:3395-3638(+)$1	1	175	180	15.0000
)((((	chr3:47048489-47048857(+)$1	1	227	232	15.0000
..)))	chr19:11465297-11465586(+)$1	1	83	88	15.0000
.....	chr12:57919139-57919446(+)$1	1	50	55	15.0000
.....	chr19:6745913-6746232(+)$1	1	40	45	15.0000
.....	chr14:55529460-55529818(+)$1	1	32	37	15.0000
.....	chr6:30672690-30672971(-)$1	1	18	23	15.0000
)....	chr1:155160968-155161193(-)$1	1	183	188	15.0000
.....	chr12:7045874-7046115(+)$1	1	83	88	15.0000
.....	chr17:27212857-27213129(-)$1	1	113	118	15.0000
.....	chr8:145065324-145065577(+)$1	1	109	114	15.0000
.....	chrM:8347-8560(+)$1	1	124	129	15.0000
.....	chr17:7416599-7416924(+)$1	1	172	177	15.0000
.))))	chr19:2248135-2248404(+)$1	1	26	31	15.0000
....(	chr12:57111275-57111544(-)$1	1	41	46	15.0000
(((..	chr20:43560953-43561219(+)$1	1	29	34	15.0000
)))))	chr17:4848114-4848459(+)$1	1	99	104	15.0000
...))	chr9:139728249-139728573(+)$1	1	77	82	15.0000
.....	chrM:10855-11064(+)$1	1	74	79	15.0000
))...	chr19:2247802-2248057(+)$1	1	13	18	15.0000
(((..	chr6:32160157-32160445(-)$1	1	102	107	15.0000
(((..	chr1:8420645-8420957(-)$1	1	9	14	15.0000
.....	chr12:57112980-57113221(-)$1	1	140	145	15.0000
....(	chr11:72534613-72534928(+)$1	1	145	150	15.0000
)).))	chr6:30617510-30617809(+)$1	1	10	15	15.0000
)....	chr1:39879454-39879824(+)$1	1	30	35	15.0000
)....	chr12:122260615-122260938(+)$1	1	132	137	15.0000
)).))	chr13:39587615-39587905(-)$1	1	252	257	15.0000
)))).	chr19:54656763-54657072(+)$1	1	91	96	15.0000
.....	chr6:35260171-35260442(+)$1	1	53	58	15.0000
.....	chr19:807719-807975(+)$1	1	118	123	15.0000
)).))	chr16:28877616-28877912(+)$1	1	194	199	15.0000
)))).	chr5:138941215-138941514(+)$1	1	152	157	15.0000
((.((	chr1:8420260-8420500(-)$1	1	5	10	15.0000
....(	chr12:7045482-7045752(+)$1	1	25	30	15.0000
....)	chr11:64533216-64533538(-)$1	1	72	77	15.0000
)..))	chr12:53848427-53848688(+)$1	1	49	54	15.0000
.....	chr16:24942145-24942471(-)$1	1	54	59	15.0000
(.(((	chr5:133984626-133984915(+)$1	1	51	56	15.0000
)....	chr7:143079950-143080277(+)$1	1	33	38	15.0000
((((.	chr1:150526087-150526383(+)$1	1	22	27	15.0000
((...	chr19:16940321-16940720(+)$1	1	47	52	15.0000
.....	chr12:7045613-7045884(+)$1	1	3	8	15.0000
.....	chr19:2248204-2248452(+)$1	1	41	46	15.0000
(((((	chr12:57111024-57111260(-)$1	1	7	12	15.0000
(((((	chr12:57111120-57111465(-)$1	1	31	36	15.0000
.....	chr16:88791381-88791712(-)$1	1	175	180	15.0000
.....	chr12:120653752-120654047(-)$1	1	73	78	15.0000
....(	chr12:57112109-57112371(-)$1	1	34	39	15.0000
(((.(	chr6:41545495-41545827(+)$1	1	190	195	15.0000
.(((.	chrX:140994928-140995248(+)$1	1	56	61	15.0000
.....	chr14:55529660-55529982(+)$1	1	185	190	15.0000
.....	chr17:80708447-80708700(+)$1	1	194	199	15.0000
.....	chr12:57114938-57115206(-)$1	1	24	29	15.0000
.....	chr16:30675494-30675753(+)$1	1	1	6	15.0000
((...	chr19:36278799-36279065(+)$1	1	17	22	15.0000
.....	chr5:31526541-31526849(-)$1	1	26	31	15.0000
((...	chr16:30734943-30735236(+)$1	1	15	20	15.0000
(((((	chr19:7706667-7707026(+)$1	1	240	245	15.0000
.....	chr1:27736227-27736480(-)$1	1	45	50	15.0000
.....	chr11:45986879-45987185(-)$1	1	77	82	15.0000
.....	chr8:144351338-144351721(+)$1	1	57	62	15.0000
(....	chr18:34376603-34376903(-)$1	1	68	73	15.0000
.....	chr12:7045552-7045813(+)$1	1	31	36	15.0000
((...	chr9:131016797-131017084(+)$1	1	7	12	15.0000
...))	chr3:47452260-47452592(+)$1	1	157	162	15.0000
.....	chrM:3445-3702(+)$1	1	125	130	15.0000
.....	chr16:67576593-67576992(+)$1	1	4	9	15.0000
((...	chr12:7046029-7046386(+)$1	1	1	6	15.0000
....(	chr12:57112179-57112438(-)$1	1	32	37	15.0000
.....	chr3:47451498-47451806(+)$1	1	30	35	15.0000
...))	chr3:9798500-9798868(+)$1	1	18	23	15.0000
...((	chr16:30734845-30735143(+)$1	1	113	118	15.0000
(....	chr12:122618002-122618329(+)$1	1	4	9	15.0000
.((((	chr6:30672916-30673191(-)$1	1	115	120	15.0000
.....	chrM:8377-8591(+)$1	1	94	99	15.0000
.....	chrM:6308-6536(+)$1	1	17	22	15.0000
.((((	chr2:242694645-242695032(+)$1	1	1	6	15.0000

#PSSM
C : 0.91	c : 0.08	
C : 0.91	c : 0.08	
U : 0.91	u : 0.08	
C : 0.91	c : 0.08	
C : 0.91	c : 0.08	

#score	1230.0000000000002
#seq	82
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_transcript_m3_run1.nuc.txt

#NT
CAG	chr1:11721721-11722061(+)$1	340	19	22	8.9999
CAG	chr12:111800590-111800904(-)$1	314	5	8	8.9999
CAG	chr16:4015108-4015335(-)$1	227	13	16	8.9999
CAG	chr10:82279189-82279425(+)$1	236	2	5	8.9999
CAG	chr2:233743468-233743834(-)$1	366	2	5	8.9999
CAG	chr19:7978259-7978526(+)$1	267	11	14	8.9999
CAG	chr19:47223691-47223960(-)$1	269	44	47	8.9999
CAG	chr5:150408154-150408473(+)$1	319	24	27	8.9999
CAG	chr2:3502228-3502504(-)$1	276	26	29	8.9999
CAG	chr11:60703483-60703744(+)$1	261	15	18	8.9999
CAG	chr21:46934833-46935078(-)$1	245	59	62	8.9999
cag	chr19:16212757-16213008(+)$1	251	168	171	8.9999
CAG	chr2:219269605-219269873(+)$1	268	118	121	8.9999
CAG	chr11:61283982-61284282(-)$1	300	154	157	8.9999
cag	chr11:46698991-46699279(-)$1	288	35	38	8.9999
CAG	chr8:17423161-17423413(+)$1	252	74	77	8.9999
CAG	chr5:172742776-172743010(-)$1	234	17	20	8.9999
CAG	chr19:3490785-3491079(-)$1	294	13	16	8.9999
CAG	chr17:39910865-39911116(-)$1	251	3	6	8.9999
CAG	chr1:1152428-1152703(-)$1	275	104	107	8.9999
CAG	chr9:116026166-116026415(+)$1	249	7	10	8.9999
CAG	chr3:49758407-49758712(-)$1	305	17	20	8.9999
CAG	chr12:50523884-50524202(-)$1	318	54	57	8.9999
CAG	chr14:21928848-21929094(-)$1	246	0	3	8.9999
cag	chr22:36662305-36662543(+)$1	238	39	42	8.9999
cag	chr14:75600427-75600698(-)$1	271	21	24	8.9999
cag	chr19:1038808-1039076(+)$1	268	39	42	8.9999
CAG	chr9:134372232-134372513(+)$1	281	1	4	8.9999
CAG	chr21:45113988-45114292(+)$1	304	4	7	8.9999
CAG	chr9:139317964-139318275(+)$1	311	54	57	8.9999
CAG	chr19:45406510-45406778(+)$1	268	63	66	8.9999
CAG	chr1:990903-991147(+)$1	244	13	16	8.9999
CAG	chr9:111782522-111782792(-)$1	270	42	45	8.9999
CAG	chr9:131910254-131910500(+)$1	246	73	76	8.9999
cag	chrX:77083486-77083753(-)$1	267	29	32	8.9999
CAG	chr19:42880474-42880779(+)$1	305	127	130	8.9999
CAG	chr9:140174837-140175164(+)$1	327	16	19	8.9999
CAG	chr16:87437573-87437857(+)$1	284	8	11	8.9999
CAG	chr11:62392978-62393270(-)$1	292	72	75	8.9999
CAG	chr20:17594404-17594661(-)$1	257	1	4	8.9999
cag	chr19:16663091-16663342(-)$1	251	24	27	8.9999
CAG	chr17:37075085-37075327(+)$1	242	21	24	8.9999
CAG	chr19:10501798-10502109(-)$1	311	155	158	8.9999
CAG	chr22:44342827-44343117(+)$1	290	87	90	8.9999
cag	chr5:79438020-79438260(-)$1	240	71	74	8.9999
CAG	chr21:46226383-46226666(-)$1	283	14	17	8.9999
CAG	chr22:41753633-41753895(+)$1	262	81	84	8.9999
CAG	chr1:26188791-26189073(-)$1	282	4	7	8.9999
CAG	chr13:113977044-113977302(+)$1	258	224	227	8.9999
CAG	chr15:42452038-42452374(-)$1	336	7	10	8.9999
CAG	chr1:167759644-167759942(+)$1	298	13	16	8.9999
CAG	chr1:56960972-56961240(-)$1	268	2	5	8.9999
CAG	chr14:24906823-24907071(+)$1	248	7	10	8.9999
CAG	chr3:133480096-133480390(+)$1	294	88	91	8.9999
CAG	chr9:139834849-139835248(-)$1	399	28	31	8.9999
CAG	chr16:87865554-87865775(-)$1	221	17	20	8.9999
CAG	chr12:6975308-6975566(+)$1	258	10	13	8.9999
CAG	chr22:43267197-43267477(-)$1	280	37	40	8.9999
CAG	chr16:56396299-56396570(-)$1	271	26	29	8.9999
CAG	chr19:17693602-17693826(+)$1	224	38	41	8.9999
CAG	chr6:3722997-3723256(-)$1	259	2	5	8.9999
CAG	chr10:101910420-101910676(-)$1	256	12	15	8.9999
CAG	chr12:50157857-50158083(+)$1	226	1	4	8.9999
CAG	chr5:179228450-179228711(-)$1	261	14	17	8.9999
CAG	chr17:17715411-17715717(-)$1	306	12	15	8.9999
CAG	chr2:171573952-171574207(+)$1	255	22	25	8.9999
CAG	chr7:150070038-150070352(+)$1	314	55	58	8.9999
CAG	chr6:138744556-138744787(-)$1	231	14	17	8.9999
CAG	chrX:69255696-69256007(+)$1	311	60	63	8.9999
CAG	chr22:42070148-42070486(-)$1	338	164	167	8.9999
CAG	chr1:113455123-113455405(-)$1	282	1	4	8.9999
CAG	chr17:27207116-27207373(-)$1	257	15	18	8.9999
CAG	chr14:31569640-31569908(-)$1	268	52	55	8.9999
CAG	chr16:3534829-3535122(+)$1	293	10	13	8.9999
CAG	chr17:42396923-42397201(-)$1	278	1	4	8.9999
CAG	chr6:44221830-44222161(-)$1	331	56	59	8.9999
CAG	chr16:4432877-4433152(+)$1	275	25	28	8.9999
CAG	chr19:8326900-8327214(+)$1	314	4	7	8.9999
CAG	chr15:89740769-89741049(+)$1	280	12	15	8.9999
cag	chr22:21304808-21305088(+)$1	280	9	12	8.9999
CAG	chr19:14203662-14203957(-)$1	295	113	116	8.9999
CAG	chr21:47610024-47610255(-)$1	231	35	38	8.9999
CAG	chr16:89710846-89711097(-)$1	251	9	12	8.9999
CAG	chr16:57416651-57416871(+)$1	220	0	3	8.9999
CAG	chr16:70695939-70696187(-)$1	248	6	9	8.9999
CAG	chr17:72833702-72833937(+)$1	235	23	26	8.9999
CAG	chr17:79801110-79801322(-)$1	212	42	45	8.9999
CAG	chr19:40739320-40739579(-)$1	259	5	8	8.9999
CAG	chr5:137891004-137891314(-)$1	310	81	84	8.9999
CAG	chr1:150594569-150594839(-)$1	270	16	19	8.9999
CAG	chr14:104001131-104001424(+)$1	293	19	22	8.9999
cag	chr1:28823811-28824102(+)$1	291	2	5	8.9999
CAG	chr1:12072189-12072436(+)$1	247	63	66	8.9999
CAG	chr12:1896927-1897192(+)$1	265	13	16	8.9999
CAG	chr1:12072985-12073258(+)$1	273	59	62	8.9999
CAG	chr17:79780529-79780799(-)$1	270	13	16	8.9999

#otherMatches

#Struct PSSM
C::	chr1:150547293-150547562(-)$1	269	7	10	8.9999
ff[	chr1:11721721-11722061(+)$1	340	19	22	8.9999
:::	chr12:111800590-111800904(-)$1	314	5	8	8.9999
!bb	chr16:4015108-4015335(-)$1	227	13	16	8.9999
:dd	chr10:82279189-82279425(+)$1	236	2	5	8.9999
eee	chr2:233743468-233743834(-)$1	366	2	5	8.9999
cll	chr19:7978259-7978526(+)$1	267	11	14	8.9999
fff	chr19:47223691-47223960(-)$1	269	44	47	8.9999
fff	chr5:150408154-150408473(+)$1	319	24	27	8.9999
dd[	chr2:3502228-3502504(-)$1	276	26	29	8.9999
fff	chr11:60703483-60703744(+)$1	261	15	18	8.9999
:GG	chr21:46934833-46935078(-)$1	245	59	62	8.9999
ddd	chr19:16212757-16213008(+)$1	251	168	171	8.9999
JJJ	chr2:219269605-219269873(+)$1	268	118	121	8.9999
hhh	chr11:61283982-61284282(-)$1	300	154	157	8.9999
ddd	chr11:46698991-46699279(-)$1	288	35	38	8.9999
GEE	chr8:17423161-17423413(+)$1	252	74	77	8.9999
hhh	chr5:172742776-172743010(-)$1	234	17	20	8.9999
bll	chr19:3490785-3491079(-)$1	294	13	16	8.9999
fff	chr17:39910865-39911116(-)$1	251	3	6	8.9999
eee	chr1:1152428-1152703(-)$1	275	104	107	8.9999
MBB	chr9:116026166-116026415(+)$1	249	7	10	8.9999
{EE	chr3:49758407-49758712(-)$1	305	17	20	8.9999
ccc	chr12:50523884-50524202(-)$1	318	54	57	8.9999
:::	chr14:21928848-21929094(-)$1	246	0	3	8.9999
mbb	chr22:36662305-36662543(+)$1	238	39	42	8.9999
yyy	chr14:75600427-75600698(-)$1	271	21	24	8.9999
##i	chr19:1038808-1039076(+)$1	268	39	42	8.9999
EEE	chr9:134372232-134372513(+)$1	281	1	4	8.9999
DDD	chr21:45113988-45114292(+)$1	304	4	7	8.9999
ddd	chr9:139317964-139318275(+)$1	311	54	57	8.9999
EEE	chr19:45406510-45406778(+)$1	268	63	66	8.9999
II{	chr1:990903-991147(+)$1	244	13	16	8.9999
hhh	chr9:111782522-111782792(-)$1	270	42	45	8.9999
c]f	chr9:131910254-131910500(+)$1	246	73	76	8.9999
e[b	chrX:77083486-77083753(-)$1	267	29	32	8.9999
ccc	chr19:42880474-42880779(+)$1	305	127	130	8.9999
"ee	chr9:140174837-140175164(+)$1	327	16	19	8.9999
{EE	chr16:87437573-87437857(+)$1	284	8	11	8.9999
:ee	chr11:62392978-62393270(-)$1	292	72	75	8.9999
DDD	chr20:17594404-17594661(-)$1	257	1	4	8.9999
EEE	chr19:16663091-16663342(-)$1	251	24	27	8.9999
FFF	chr17:37075085-37075327(+)$1	242	21	24	8.9999
EEE	chr19:10501798-10502109(-)$1	311	155	158	8.9999
cnn	chr22:44342827-44343117(+)$1	290	87	90	8.9999
eee	chr5:79438020-79438260(-)$1	240	71	74	8.9999
ccp	chr21:46226383-46226666(-)$1	283	14	17	8.9999
g22	chr22:41753633-41753895(+)$1	262	81	84	8.9999
EEE	chr1:26188791-26189073(-)$1	282	4	7	8.9999
ddd	chr13:113977044-113977302(+)$1	258	224	227	8.9999
c!!	chr15:42452038-42452374(-)$1	336	7	10	8.9999
HHH	chr1:167759644-167759942(+)$1	298	13	16	8.9999
:FF	chr1:56960972-56961240(-)$1	268	2	5	8.9999
EEB	chr14:24906823-24907071(+)$1	248	7	10	8.9999
EEE	chr3:133480096-133480390(+)$1	294	88	91	8.9999
ddd	chr9:139834849-139835248(-)$1	399	28	31	8.9999
c[d	chr16:87865554-87865775(-)$1	221	17	20	8.9999
G:=	chr12:6975308-6975566(+)$1	258	10	13	8.9999
:::	chr22:43267197-43267477(-)$1	280	37	40	8.9999
bb[	chr16:56396299-56396570(-)$1	271	26	29	8.9999
{FF	chr19:17693602-17693826(+)$1	224	38	41	8.9999
FFF	chr6:3722997-3723256(-)$1	259	2	5	8.9999
mmm	chr10:101910420-101910676(-)$1	256	12	15	8.9999
:::	chr12:50157857-50158083(+)$1	226	1	4	8.9999
DDM	chr5:179228450-179228711(-)$1	261	14	17	8.9999
B:f	chr17:17715411-17715717(-)$1	306	12	15	8.9999
AKK	chr2:171573952-171574207(+)$1	255	22	25	8.9999
BBB	chr7:150070038-150070352(+)$1	314	55	58	8.9999
FFF	chr6:138744556-138744787(-)$1	231	14	17	8.9999
i[e	chrX:69255696-69256007(+)$1	311	60	63	8.9999
22c	chr22:42070148-42070486(-)$1	338	164	167	8.9999
eee	chr1:113455123-113455405(-)$1	282	1	4	8.9999
ddd	chr17:27207116-27207373(-)$1	257	15	18	8.9999
ECC	chr14:31569640-31569908(-)$1	268	52	55	8.9999
MMM	chr16:3534829-3535122(+)$1	293	10	13	8.9999
DDD	chr17:42396923-42397201(-)$1	278	1	4	8.9999
ccc	chr6:44221830-44222161(-)$1	331	56	59	8.9999
:::	chr16:4432877-4433152(+)$1	275	25	28	8.9999
FFF	chr19:8326900-8327214(+)$1	314	4	7	8.9999
C::	chr15:89740769-89741049(+)$1	280	12	15	8.9999
ccc	chr22:21304808-21305088(+)$1	280	9	12	8.9999
%%b	chr19:14203662-14203957(-)$1	295	113	116	8.9999
===	chr21:47610024-47610255(-)$1	231	35	38	8.9999
LLD	chr16:89710846-89711097(-)$1	251	9	12	8.9999
ddd	chr16:57416651-57416871(+)$1	220	0	3	8.9999
FFF	chr16:70695939-70696187(-)$1	248	6	9	8.9999
fff	chr17:72833702-72833937(+)$1	235	23	26	8.9999
mmm	chr17:79801110-79801322(-)$1	212	42	45	8.9999
{BB	chr19:40739320-40739579(-)$1	259	5	8	8.9999
ddd	chr5:137891004-137891314(-)$1	310	81	84	8.9999
F:b	chr1:150594569-150594839(-)$1	270	16	19	8.9999
EEd	chr14:104001131-104001424(+)$1	293	19	22	8.9999
eee	chr1:28823811-28824102(+)$1	291	2	5	8.9999
ddd	chr1:12072189-12072436(+)$1	247	63	66	8.9999
c::	chr12:1896927-1897192(+)$1	265	13	16	8.9999
fff	chr1:12072985-12073258(+)$1	273	59	62	8.9999
B{D	chr17:79780529-79780799(-)$1	270	13	16	8.9999

#DB
(..	chr1:150547293-150547562(-)$1	1	7	10	8.9999
((.	chr1:11721721-11722061(+)$1	1	19	22	8.9999
...	chr12:111800590-111800904(-)$1	1	5	8	8.9999
.((	chr16:4015108-4015335(-)$1	1	13	16	8.9999
.((	chr10:82279189-82279425(+)$1	1	2	5	8.9999
(((	chr2:233743468-233743834(-)$1	1	2	5	8.9999
(..	chr19:7978259-7978526(+)$1	1	11	14	8.9999
(((	chr19:47223691-47223960(-)$1	1	44	47	8.9999
(((	chr5:150408154-150408473(+)$1	1	24	27	8.9999
((.	chr2:3502228-3502504(-)$1	1	26	29	8.9999
(((	chr11:60703483-60703744(+)$1	1	15	18	8.9999
.((	chr21:46934833-46935078(-)$1	1	59	62	8.9999
)))	chr19:16212757-16213008(+)$1	1	168	171	8.9999
(((	chr2:219269605-219269873(+)$1	1	118	121	8.9999
)))	chr11:61283982-61284282(-)$1	1	154	157	8.9999
(((	chr11:46698991-46699279(-)$1	1	35	38	8.9999
(((	chr8:17423161-17423413(+)$1	1	74	77	8.9999
(((	chr5:172742776-172743010(-)$1	1	17	20	8.9999
(..	chr19:3490785-3491079(-)$1	1	13	16	8.9999
(((	chr17:39910865-39911116(-)$1	1	3	6	8.9999
(((	chr1:1152428-1152703(-)$1	1	104	107	8.9999
.((	chr9:116026166-116026415(+)$1	1	7	10	8.9999
.((	chr3:49758407-49758712(-)$1	1	17	20	8.9999
)))	chr12:50523884-50524202(-)$1	1	54	57	8.9999
...	chr14:21928848-21929094(-)$1	1	0	3	8.9999
.))	chr22:36662305-36662543(+)$1	1	39	42	8.9999
...	chr14:75600427-75600698(-)$1	1	21	24	8.9999
..(	chr19:1038808-1039076(+)$1	1	39	42	8.9999
(((	chr9:134372232-134372513(+)$1	1	1	4	8.9999
(((	chr21:45113988-45114292(+)$1	1	4	7	8.9999
(((	chr9:139317964-139318275(+)$1	1	54	57	8.9999
(((	chr19:45406510-45406778(+)$1	1	63	66	8.9999
((.	chr1:990903-991147(+)$1	1	13	16	8.9999
)))	chr9:111782522-111782792(-)$1	1	42	45	8.9999
).)	chr9:131910254-131910500(+)$1	1	73	76	8.9999
(.(	chrX:77083486-77083753(-)$1	1	29	32	8.9999
)))	chr19:42880474-42880779(+)$1	1	127	130	8.9999
.((	chr9:140174837-140175164(+)$1	1	16	19	8.9999
.((	chr16:87437573-87437857(+)$1	1	8	11	8.9999
.((	chr11:62392978-62393270(-)$1	1	72	75	8.9999
(((	chr20:17594404-17594661(-)$1	1	1	4	8.9999
(((	chr19:16663091-16663342(-)$1	1	24	27	8.9999
(((	chr17:37075085-37075327(+)$1	1	21	24	8.9999
)))	chr19:10501798-10502109(-)$1	1	155	158	8.9999
(..	chr22:44342827-44343117(+)$1	1	87	90	8.9999
(((	chr5:79438020-79438260(-)$1	1	71	74	8.9999
((.	chr21:46226383-46226666(-)$1	1	14	17	8.9999
)..	chr22:41753633-41753895(+)$1	1	81	84	8.9999
(((	chr1:26188791-26189073(-)$1	1	4	7	8.9999
)))	chr13:113977044-113977302(+)$1	1	224	227	8.9999
(..	chr15:42452038-42452374(-)$1	1	7	10	8.9999
(((	chr1:167759644-167759942(+)$1	1	13	16	8.9999
.((	chr1:56960972-56961240(-)$1	1	2	5	8.9999
(((	chr14:24906823-24907071(+)$1	1	7	10	8.9999
(((	chr3:133480096-133480390(+)$1	1	88	91	8.9999
)))	chr9:139834849-139835248(-)$1	1	28	31	8.9999
(.(	chr16:87865554-87865775(-)$1	1	17	20	8.9999
(.(	chr12:6975308-6975566(+)$1	1	10	13	8.9999
...	chr22:43267197-43267477(-)$1	1	37	40	8.9999
((.	chr16:56396299-56396570(-)$1	1	26	29	8.9999
.((	chr19:17693602-17693826(+)$1	1	38	41	8.9999
(((	chr6:3722997-3723256(-)$1	1	2	5	8.9999
...	chr10:101910420-101910676(-)$1	1	12	15	8.9999
...	chr12:50157857-50158083(+)$1	1	1	4	8.9999
((.	chr5:179228450-179228711(-)$1	1	14	17	8.9999
(.(	chr17:17715411-17715717(-)$1	1	12	15	8.9999
(..	chr2:171573952-171574207(+)$1	1	22	25	8.9999
(((	chr7:150070038-150070352(+)$1	1	55	58	8.9999
(((	chr6:138744556-138744787(-)$1	1	14	17	8.9999
(.(	chrX:69255696-69256007(+)$1	1	60	63	8.9999
..)	chr22:42070148-42070486(-)$1	1	164	167	8.9999
(((	chr1:113455123-113455405(-)$1	1	1	4	8.9999
(((	chr17:27207116-27207373(-)$1	1	15	18	8.9999
(((	chr14:31569640-31569908(-)$1	1	52	55	8.9999
...	chr16:3534829-3535122(+)$1	1	10	13	8.9999
(((	chr17:42396923-42397201(-)$1	1	1	4	8.9999
)))	chr6:44221830-44222161(-)$1	1	56	59	8.9999
...	chr16:4432877-4433152(+)$1	1	25	28	8.9999
(((	chr19:8326900-8327214(+)$1	1	4	7	8.9999
(..	chr15:89740769-89741049(+)$1	1	12	15	8.9999
(((	chr22:21304808-21305088(+)$1	1	9	12	8.9999
..(	chr19:14203662-14203957(-)$1	1	113	116	8.9999
(((	chr21:47610024-47610255(-)$1	1	35	38	8.9999
..(	chr16:89710846-89711097(-)$1	1	9	12	8.9999
(((	chr16:57416651-57416871(+)$1	1	0	3	8.9999
(((	chr16:70695939-70696187(-)$1	1	6	9	8.9999
)))	chr17:72833702-72833937(+)$1	1	23	26	8.9999
...	chr17:79801110-79801322(-)$1	1	42	45	8.9999
.((	chr19:40739320-40739579(-)$1	1	5	8	8.9999
)))	chr5:137891004-137891314(-)$1	1	81	84	8.9999
(.(	chr1:150594569-150594839(-)$1	1	16	19	8.9999
(((	chr14:104001131-104001424(+)$1	1	19	22	8.9999
(((	chr1:28823811-28824102(+)$1	1	2	5	8.9999
)))	chr1:12072189-12072436(+)$1	1	63	66	8.9999
)..	chr12:1896927-1897192(+)$1	1	13	16	8.9999
(((	chr1:12072985-12073258(+)$1	1	59	62	8.9999
(.(	chr17:79780529-79780799(-)$1	1	13	16	8.9999

#PSSM
C : 0.89	c : 0.10	
A : 0.89	a : 0.10	
G : 0.89	g : 0.10	

#score	872.9999999999998
#seq	97
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_UTR_m3_run2.nuc.txt

#NT
AAUAAA	chr20:5525014-5525311(-)$1	297	206	212	18.0000
AAUAAA	chr5:56558651-56558974(+)$1	323	233	239	18.0000
AAUAAA	chr4:83345720-83345991(-)$1	271	190	196	18.0000
AAUAAA	chr1:184659587-184660013(-)$1	426	355	361	18.0000
AAUAAA	chr14:39651035-39651339(+)$1	304	262	268	18.0000
aauaaa	chr7:64450734-64451011(-)$1	277	254	260	18.0000
AAUAAA	chr12:57106185-57106436(-)$1	251	193	199	18.0000
aauaaa	chr7:138991982-138992318(+)$1	336	268	274	18.0000
aauaaa	chr15:59205601-59205988(-)$1	387	343	349	18.0000
AAUAAA	chr3:156865512-156865807(-)$1	295	194	200	18.0000
AAUAAA	chr8:28922085-28922370(+)$1	285	179	185	18.0000
aauaaa	chr11:34120412-34120672(+)$1	260	170	176	18.0000
AAUAAA	chr3:195776066-195776361(-)$1	295	186	192	18.0000
AAUAAA	chr20:60711717-60711987(-)$1	270	77	83	18.0000
aauaaa	chr12:72003438-72003733(-)$1	295	238	244	18.0000
AAUAAA	chr2:54091932-54092216(-)$1	284	207	213	18.0000
AAUAAA	chr3:142761871-142762106(+)$1	235	11	17	18.0000
AAUAAA	chr5:149234305-149234656(+)$1	351	229	235	18.0000
AAUAAA	chr3:44686574-44686827(+)$1	253	163	169	18.0000
AAUAAA	chr3:142761856-142762071(+)$1	215	26	32	18.0000
AAUAAA	chr5:32601159-32601430(+)$1	271	46	52	18.0000
AAUAAA	chr1:100985457-100985754(+)$1	297	255	261	18.0000
AAUAAA	chr12:69667921-69668192(+)$1	271	194	200	18.0000
aauaaa	chr17:34965217-34965484(+)$1	267	164	170	18.0000
aauaaa	chr14:53106738-53106999(-)$1	261	201	207	18.0000
aauaaa	chr15:44821066-44821322(+)$1	256	149	155	18.0000
aauaaa	chr3:37029264-37029569(-)$1	305	191	197	18.0000
AAUAAA	chr8:28922048-28922285(+)$1	237	216	222	18.0000
aauaaa	chr12:46751956-46752262(-)$1	306	91	97	18.0000
AAUAAA	chr20:3127083-3127427(-)$1	344	317	323	18.0000
AAUAAA	chr17:30697162-30697484(+)$1	322	180	186	18.0000
AAUAAA	chr16:85709620-85709903(+)$1	283	166	172	18.0000
aauaaa	chr4:68338103-68338419(-)$1	316	198	204	18.0000
AAUAAA	chr8:104454922-104455282(+)$1	360	249	255	18.0000
AAUAAA	chr20:32441467-32441709(+)$1	242	147	153	18.0000
aauaaa	chr11:64852204-64852537(+)$1	333	250	256	18.0000
AAUAAA	chr1:71528939-71529213(-)$1	274	172	178	18.0000
AAUAAA	chr5:10264748-10265033(+)$1	285	263	269	18.0000
AAUAAA	chr5:68473322-68473636(+)$1	314	169	175	18.0000

#otherMatches

#Struct PSSM
dnnnnn	chr3:171318568-171318896(-)$1	328	224	230	18.0000
::::::	chr20:5525014-5525311(-)$1	297	206	212	18.0000
::::::	chr5:56558651-56558974(+)$1	323	233	239	18.0000
hhhhhh	chr4:83345720-83345991(-)$1	271	190	196	18.0000
==ffff	chr1:184659587-184660013(-)$1	426	355	361	18.0000
@@@@@@	chr14:39651035-39651339(+)$1	304	262	268	18.0000
::::::	chr7:64450734-64451011(-)$1	277	254	260	18.0000
77777f	chr12:57106185-57106436(-)$1	251	193	199	18.0000
777iii	chr7:138991982-138992318(+)$1	336	268	274	18.0000
::::::	chr15:59205601-59205988(-)$1	387	343	349	18.0000
yyyyyy	chr3:156865512-156865807(-)$1	295	194	200	18.0000
fffooo	chr8:28922085-28922370(+)$1	285	179	185	18.0000
gggggm	chr11:34120412-34120672(+)$1	260	170	176	18.0000
ccc$$$	chr3:195776066-195776361(-)$1	295	186	192	18.0000
hhhhhh	chr20:60711717-60711987(-)$1	270	77	83	18.0000
qqhhhh	chr12:72003438-72003733(-)$1	295	238	244	18.0000
hhh:::	chr2:54091932-54092216(-)$1	284	207	213	18.0000
::::::	chr3:142761871-142762106(+)$1	235	11	17	18.0000
::::::	chr5:149234305-149234656(+)$1	351	229	235	18.0000
ssssss	chr3:44686574-44686827(+)$1	253	163	169	18.0000
::::::	chr3:142761856-142762071(+)$1	215	26	32	18.0000
rrrrrr	chr5:32601159-32601430(+)$1	271	46	52	18.0000
uuuugg	chr1:100985457-100985754(+)$1	297	255	261	18.0000
ddd[gg	chr12:69667921-69668192(+)$1	271	194	200	18.0000
::::::	chr17:34965217-34965484(+)$1	267	164	170	18.0000
=====m	chr14:53106738-53106999(-)$1	261	201	207	18.0000
IIIIII	chr15:44821066-44821322(+)$1	256	149	155	18.0000
::::hh	chr3:37029264-37029569(-)$1	305	191	197	18.0000
FFFF~~	chr8:28922048-28922285(+)$1	237	216	222	18.0000
4444gg	chr12:46751956-46752262(-)$1	306	91	97	18.0000
::::::	chr20:3127083-3127427(-)$1	344	317	323	18.0000
pppppf	chr17:30697162-30697484(+)$1	322	180	186	18.0000
fffff:	chr16:85709620-85709903(+)$1	283	166	172	18.0000
ooooee	chr4:68338103-68338419(-)$1	316	198	204	18.0000
hhhhh2	chr8:104454922-104455282(+)$1	360	249	255	18.0000
fsssss	chr20:32441467-32441709(+)$1	242	147	153	18.0000
gggggm	chr11:64852204-64852537(+)$1	333	250	256	18.0000
:::::D	chr1:71528939-71529213(-)$1	274	172	178	18.0000
pppppp	chr5:10264748-10265033(+)$1	285	263	269	18.0000
::::::	chr5:68473322-68473636(+)$1	314	169	175	18.0000

#DB
(.....	chr3:171318568-171318896(-)$1	1	224	230	18.0000
......	chr20:5525014-5525311(-)$1	1	206	212	18.0000
......	chr5:56558651-56558974(+)$1	1	233	239	18.0000
))))))	chr4:83345720-83345991(-)$1	1	190	196	18.0000
((((((	chr1:184659587-184660013(-)$1	1	355	361	18.0000
......	chr14:39651035-39651339(+)$1	1	262	268	18.0000
......	chr7:64450734-64451011(-)$1	1	254	260	18.0000
.....)	chr12:57106185-57106436(-)$1	1	193	199	18.0000
...)))	chr7:138991982-138992318(+)$1	1	268	274	18.0000
......	chr15:59205601-59205988(-)$1	1	343	349	18.0000
......	chr3:156865512-156865807(-)$1	1	194	200	18.0000
(((...	chr8:28922085-28922370(+)$1	1	179	185	18.0000
(((((.	chr11:34120412-34120672(+)$1	1	170	176	18.0000
(((...	chr3:195776066-195776361(-)$1	1	186	192	18.0000
((((((	chr20:60711717-60711987(-)$1	1	77	83	18.0000
..))))	chr12:72003438-72003733(-)$1	1	238	244	18.0000
)))...	chr2:54091932-54092216(-)$1	1	207	213	18.0000
......	chr3:142761871-142762106(+)$1	1	11	17	18.0000
......	chr5:149234305-149234656(+)$1	1	229	235	18.0000
......	chr3:44686574-44686827(+)$1	1	163	169	18.0000
......	chr3:142761856-142762071(+)$1	1	26	32	18.0000
......	chr5:32601159-32601430(+)$1	1	46	52	18.0000
....))	chr1:100985457-100985754(+)$1	1	255	261	18.0000
(((.((	chr12:69667921-69668192(+)$1	1	194	200	18.0000
......	chr17:34965217-34965484(+)$1	1	164	170	18.0000
(((((.	chr14:53106738-53106999(-)$1	1	201	207	18.0000
((((((	chr15:44821066-44821322(+)$1	1	149	155	18.0000
....((	chr3:37029264-37029569(-)$1	1	191	197	18.0000
))))..	chr8:28922048-28922285(+)$1	1	216	222	18.0000
....))	chr12:46751956-46752262(-)$1	1	91	97	18.0000
......	chr20:3127083-3127427(-)$1	1	317	323	18.0000
.....)	chr17:30697162-30697484(+)$1	1	180	186	18.0000
))))).	chr16:85709620-85709903(+)$1	1	166	172	18.0000
....))	chr4:68338103-68338419(-)$1	1	198	204	18.0000
))))).	chr8:104454922-104455282(+)$1	1	249	255	18.0000
(.....	chr20:32441467-32441709(+)$1	1	147	153	18.0000
(((((.	chr11:64852204-64852537(+)$1	1	250	256	18.0000
.....)	chr1:71528939-71529213(-)$1	1	172	178	18.0000
......	chr5:10264748-10265033(+)$1	1	263	269	18.0000
......	chr5:68473322-68473636(+)$1	1	169	175	18.0000

#PSSM
A : 0.67	a : 0.32	
A : 0.67	a : 0.32	
U : 0.67	u : 0.32	
A : 0.67	a : 0.32	
A : 0.67	a : 0.32	
A : 0.67	a : 0.32	

#score	720.0000000000001
#seq	40
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_UTR_m1_run1.nuc.txt

#NT
ggcggagggggg	chr22:19418938-19419231(-)$1	293	64	76	23.2881
GGGGGGUGGGGG	chr12:56632330-56632623(-)$1	293	89	101	19.8983
GGGGGAGGAGGG	chr5:135398926-135399332(+)$1	406	139	151	23.6271
AGGGGAGGGAGG	chr17:38077857-38078109(-)$1	252	170	182	20.2372
GGGGGAGGGAGA	chr2:97525493-97525767(-)$1	274	1	13	20.1525
GCGGGAGGUGGG	chr3:9847902-9848186(+)$1	284	120	132	19.7288
gggggaggggga	chr2:191513689-191513931(+)$1	242	37	49	24.0508
cggggagggggc	chr19:1592631-1592874(-)$1	243	51	63	20.8305
ggcggcgggggg	chr16:447041-447301(+)$1	260	64	76	20.1525
GGGGGAAGGGAG	chr8:103839416-103839668(-)$1	252	111	123	18.9661
GGGGGGGGUGGG	chr7:100781881-100782132(+)$1	251	106	118	20.7457
GGGGGAGGGAAG	chr11:62393128-62393371(-)$1	243	106	118	19.4745
UGGGUAGGGGGG	chr20:43954122-43954381(-)$1	259	99	111	19.9830
AGGGAAGGGGGG	chr3:48199339-48199597(-)$1	258	90	102	20.2372
ggggaagggggg	chr20:8112759-8113033(+)$1	274	81	93	23.7118
GGGGCAGGGCGG	chr3:10982076-10982341(+)$1	265	37	49	19.4745
GGGGGCGGUGGG	chr19:40790663-40790962(-)$1	299	28	40	20.9152
GGGGGGGGUGGG	chr17:46137338-46137617(+)$1	279	203	215	20.7457
gggggcgggagg	chr20:361765-362031(+)$1	266	89	101	20.5762
GGGGGAGGGGGC	chr8:145013655-145013932(-)$1	277	36	48	23.8813
CAGGGAGGGGGG	chr16:30535514-30535770(-)$1	256	223	235	20.3220
GGGGGUAGGGGG	chr5:132211749-132212005(-)$1	256	109	121	20.0677
GGGGGAGGUGGG	chr17:58469168-58469454(-)$1	286	32	44	24.0508
GGGGGAGGGGGG	chrX:70280418-70280695(-)$1	277	130	142	27.6101
CGGGGAGGGUGG	chr18:77663632-77663919(-)$1	287	7	19	20.4915
gggggagcggag	chr11:18034110-18034448(-)$1	338	96	108	18.9661
CUGGGAGGGGGG	chr14:55255854-55256117(+)$1	263	72	84	20.1525
UGGGGAGGGGGC	chr2:48010953-48011217(+)$1	264	9	21	20.4915
GGGAGAGGGGGU	chr16:67977014-67977277(-)$1	263	2	14	19.4745
gggugagguggg	chr17:76794267-76794554(-)$1	287	98	110	19.4745
gagggagguggg	chr7:2292114-2292385(-)$1	271	64	76	19.8135
GGGGAAUGGGGG	chr6:111215359-111215607(+)$1	248	195	207	19.3050
GGGGGUGGGGGG	chr16:22019511-22019740(+)$1	229	85	97	24.4745
cggggcgggggg	chr9:116918119-116918395(+)$1	276	32	44	21.4237
UAGGGAGGGGGG	chr11:115046228-115046500(-)$1	272	244	256	19.9830
GGGGGUGGGGGG	chr19:5206387-5206626(-)$1	239	113	125	24.4745
GGCGGAGGGGGG	chr11:2151476-2151707(-)$1	231	204	216	23.2881
GGGCGAGGGGGG	chr2:131809146-131809394(-)$1	248	105	117	23.0338
GGGGGAGCCGGG	chr11:64008537-64008794(+)$1	257	93	105	19.1355
cggggcgggggg	chr16:75285363-75285689(-)$1	326	1	13	21.4237
CGGGGAGGGGGA	chr19:44126646-44126937(-)$1	291	159	171	20.9999
GGGAAAGGGGGG	chr5:154193891-154194138(+)$1	247	13	25	19.2203
GGGGAAGGGGGG	chr16:29817823-29818170(-)$1	347	103	115	23.7118
GGUGGAGGGGGA	chr9:132897619-132897921(+)$1	302	150	162	19.5593
GGGGCAGGGCGG	chr10:1094580-1094878(-)$1	298	108	120	19.4745
GGGGGUGGGGGU	chr1:150594800-150595074(-)$1	274	10	22	20.8305
gggggaggggag	chr19:41305268-41305554(+)$1	286	132	144	23.3728
gggggcgcgggG	chr11:849707-849971(+)$1	264	115	127	20.0677
GGGGGAGGGGGG	chrX:70280495-70280727(-)$1	232	162	174	27.6101
GGGGGGCGGGGG	chr7:47621110-47621375(-)$1	265	28	40	19.8135
GGAGGAGGAGGG	chr6:160527078-160527415(+)$1	337	152	164	19.1355
GGGGGAGGGGGU	chr1:59247148-59247400(-)$1	252	1	13	23.9661
GCGGGAGUgggg	chr16:75284635-75284913(-)$1	278	110	122	18.7118
UGGGGAGGGUGG	chr11:62482157-62482398(-)$1	241	42	54	20.1525
GGGGGUGGGGGU	chr13:113976889-113977127(+)$1	238	117	129	20.8305
GGGGGAggggcg	chr10:102759202-102759459(+)$1	257	21	33	23.1186
AGGGGAGGGGGG	chr20:61584225-61584516(+)$1	291	30	42	24.1355
GGGGGUGGGGGA	chr16:87865824-87866121(-)$1	297	117	129	20.9152

#otherMatches

#Struct PSSM
g$$$$$bb[bbq	chr14:32546428-32546664(+)$1	236	28	40	20.5762
CCC{DDDD{FFF	chr22:19418938-19419231(-)$1	293	64	76	23.2881
]ccc========	chr12:56632330-56632623(-)$1	293	89	101	19.8983
IICCCccc[eee	chr5:135398926-135399332(+)$1	406	139	151	23.6271
$$eeeee!!eee	chr17:38077857-38078109(-)$1	252	170	182	20.2372
{EEEEE::::::	chr2:97525493-97525767(-)$1	274	1	13	20.1525
b]dddd]iiiii	chr3:9847902-9848186(+)$1	284	120	132	19.7288
hh[bb[bb[bb[	chr2:191513689-191513931(+)$1	242	37	49	24.0508
d[bb%%%%%%dd	chr19:1592631-1592874(-)$1	243	51	63	20.8305
]bb]gggggggc	chr16:447041-447301(+)$1	260	64	76	20.1525
ccc]ccc]dddd	chr8:103839416-103839668(-)$1	252	111	123	18.9661
22ddddeeeee[	chr7:100781881-100782132(+)$1	251	106	118	20.7457
:hhhhhhhh$$$	chr11:62393128-62393371(-)$1	243	106	118	19.4745
h"""========	chr20:43954122-43954381(-)$1	259	99	111	19.9830
dd]a4444ccc]	chr3:48199339-48199597(-)$1	258	90	102	20.2372
DDDJJJJJJJJJ	chr20:8112759-8113033(+)$1	274	81	93	23.7118
[apppppppa]a	chr3:10982076-10982341(+)$1	265	37	49	19.4745
KKBBFFFFFF{A	chr19:40790663-40790962(-)$1	299	28	40	20.9152
mmmmeeeeeeee	chr17:46137338-46137617(+)$1	279	203	215	20.7457
]adddd4444cc	chr20:361765-362031(+)$1	266	89	101	20.5762
a[==========	chr8:145013655-145013932(-)$1	277	36	48	23.8813
oobb]bb22a22	chr16:30535514-30535770(-)$1	256	223	235	20.3220
hhhhdddd"""c	chr5:132211749-132212005(-)$1	256	109	121	20.0677
g::bb[dddd!!	chr17:58469168-58469454(-)$1	286	32	44	24.0508
oooooccc22cc	chrX:70280418-70280695(-)$1	277	130	142	27.6101
mmeeeeeGGGGG	chr18:77663632-77663919(-)$1	287	7	19	20.4915
:A{EEEEEMMMM	chr11:18034110-18034448(-)$1	338	96	108	18.9661
:a[ffffff"""	chr14:55255854-55256117(+)$1	263	72	84	20.1525
iiii!!ccc[dd	chr2:48010953-48011217(+)$1	264	9	21	20.4915
CBB{HHHHHHHH	chr16:67977014-67977277(-)$1	263	2	14	19.4745
beeeeea]eeee	chr17:76794267-76794554(-)$1	287	98	110	19.4745
JJJJJJJJJJii	chr7:2292114-2292385(-)$1	271	64	76	19.8135
EEEEYYJJJJJJ	chr6:111215359-111215607(+)$1	248	195	207	19.3050
===hhhhhhhh"	chr16:22019511-22019740(+)$1	229	85	97	24.4745
dddd]ccceeee	chr9:116918119-116918395(+)$1	276	32	44	21.4237
FFFFF:ccc[dd	chr11:115046228-115046500(-)$1	272	244	256	19.9830
ggggg]gggggg	chr19:5206387-5206626(-)$1	239	113	125	24.4745
GGGGG}BBGGGG	chr11:2151476-2151707(-)$1	231	204	216	23.2881
iccc[ggggggg	chr2:131809146-131809394(-)$1	248	105	117	23.0338
d####dddd"""	chr11:64008537-64008794(+)$1	257	93	105	19.1355
:::FFFFFF{BB	chr16:75285363-75285689(-)$1	326	1	13	21.4237
iJJJJJJJJJJJ	chr19:44126646-44126937(-)$1	291	159	171	20.9999
DDDDKKDDDD:g	chr5:154193891-154194138(+)$1	247	13	25	19.2203
occc:::::ggg	chr16:29817823-29818170(-)$1	347	103	115	23.7118
gccc]a777777	chr9:132897619-132897921(+)$1	302	150	162	19.5593
2a22ccc22ddd	chr10:1094580-1094878(-)$1	298	108	120	19.4745
DLLLCCC{JJJJ	chr1:150594800-150595074(-)$1	274	10	22	20.8305
eeee[dddd!!g	chr19:41305268-41305554(+)$1	286	132	144	23.3728
sssseeeee444	chr11:849707-849971(+)$1	264	115	127	20.0677
ccc]ffffff]a	chrX:70280495-70280727(-)$1	232	162	174	27.6101
===========!	chr7:47621110-47621375(-)$1	265	28	40	19.8135
888888bb333i	chr6:160527078-160527415(+)$1	337	152	164	19.1355
:FFFFFF{BB{G	chr1:59247148-59247400(-)$1	252	1	13	23.9661
ff:bb[ccceee	chr16:75284635-75284913(-)$1	278	110	122	18.7118
HHHHBB::hhhh	chr11:62482157-62482398(-)$1	241	42	54	20.1525
dd[eeeeennnn	chr13:113976889-113977127(+)$1	238	117	129	20.8305
EEEEE{BBKKDD	chr10:102759202-102759459(+)$1	257	21	33	23.1186
:FFFFFF{AKKC	chr20:61584225-61584516(+)$1	291	30	42	24.1355
====&&&&&&&d	chr16:87865824-87866121(-)$1	297	117	129	20.9152

#DB
(.....((.((.	chr14:32546428-32546664(+)$1	1	28	40	20.5762
(((.((((.(((	chr22:19418938-19419231(-)$1	1	64	76	23.2881
.)))((((((((	chr12:56632330-56632623(-)$1	1	89	101	19.8983
((((((((.(((	chr5:135398926-135399332(+)$1	1	139	151	23.6271
..(((((..(((	chr17:38077857-38078109(-)$1	1	170	182	20.2372
.(((((......	chr2:97525493-97525767(-)$1	1	1	13	20.1525
).)))).)))))	chr3:9847902-9848186(+)$1	1	120	132	19.7288
((.((.((.((.	chr2:191513689-191513931(+)$1	1	37	49	24.0508
(.((......((	chr19:1592631-1592874(-)$1	1	51	63	20.8305
.)).)))))))(	chr16:447041-447301(+)$1	1	64	76	20.1525
))).))).))))	chr8:103839416-103839668(-)$1	1	111	123	18.9661
..))))(((((.	chr7:100781881-100782132(+)$1	1	106	118	20.7457
.((((((((...	chr11:62393128-62393371(-)$1	1	106	118	19.4745
(...((((((((	chr20:43954122-43954381(-)$1	1	99	111	19.9830
)).)....))).	chr3:48199339-48199597(-)$1	1	90	102	20.2372
)))(((((((((	chr20:8112759-8113033(+)$1	1	81	93	23.7118
.(.......).)	chr3:10982076-10982341(+)$1	1	37	49	19.4745
..((((((((.(	chr19:40790663-40790962(-)$1	1	28	40	20.9152
....))))))))	chr17:46137338-46137617(+)$1	1	203	215	20.7457
.)))))....))	chr20:361765-362031(+)$1	1	89	101	20.5762
(.((((((((((	chr8:145013655-145013932(-)$1	1	36	48	23.8813
..)).))..)..	chr16:30535514-30535770(-)$1	1	223	235	20.3220
((((((((...(	chr5:132211749-132212005(-)$1	1	109	121	20.0677
)..((.((((..	chr17:58469168-58469454(-)$1	1	32	44	24.0508
.....)))..))	chrX:70280418-70280695(-)$1	1	130	142	27.6101
..)))))(((((	chr18:77663632-77663919(-)$1	1	7	19	20.4915
.(.(((((....	chr11:18034110-18034448(-)$1	1	96	108	18.9661
.(.((((((...	chr14:55255854-55256117(+)$1	1	72	84	20.1525
((((..(((.((	chr2:48010953-48011217(+)$1	1	9	21	20.4915
(((.((((((((	chr16:67977014-67977277(-)$1	1	2	14	19.4745
))))))).))))	chr17:76794267-76794554(-)$1	1	98	110	19.4745
((((((((((((	chr7:2292114-2292385(-)$1	1	64	76	19.8135
))))..))))))	chr6:111215359-111215607(+)$1	1	195	207	19.3050
)))((((((((.	chr16:22019511-22019740(+)$1	1	85	97	24.4745
)))).)))))))	chr9:116918119-116918395(+)$1	1	32	44	21.4237
))))).(((.((	chr11:115046228-115046500(-)$1	1	244	256	19.9830
))))).))))))	chr19:5206387-5206626(-)$1	1	113	125	24.4745
))))).))))))	chr11:2151476-2151707(-)$1	1	204	216	23.2881
((((.(((((((	chr2:131809146-131809394(-)$1	1	105	117	23.0338
(....((((...	chr11:64008537-64008794(+)$1	1	93	105	19.1355
...((((((.((	chr16:75285363-75285689(-)$1	1	1	13	21.4237
))))))))))))	chr19:44126646-44126937(-)$1	1	159	171	20.9999
((((..((((.(	chr5:154193891-154194138(+)$1	1	13	25	19.2203
.))).....(((	chr16:29817823-29818170(-)$1	1	103	115	23.7118
)))).)......	chr9:132897619-132897921(+)$1	1	150	162	19.5593
.)..)))..)))	chr10:1094580-1094878(-)$1	1	108	120	19.4745
(...(((.((((	chr1:150594800-150595074(-)$1	1	10	22	20.8305
((((.((((..(	chr19:41305268-41305554(+)$1	1	132	144	23.3728
....)))))...	chr11:849707-849971(+)$1	1	115	127	20.0677
))).)))))).)	chrX:70280495-70280727(-)$1	1	162	174	27.6101
(((((((((((.	chr7:47621110-47621375(-)$1	1	28	40	19.8135
......))...)	chr6:160527078-160527415(+)$1	1	152	164	19.1355
.((((((.((.(	chr1:59247148-59247400(-)$1	1	1	13	23.9661
)).((.((((((	chr16:75284635-75284913(-)$1	1	110	122	18.7118
((((((..((((	chr11:62482157-62482398(-)$1	1	42	54	20.1525
((.(((((....	chr13:113976889-113977127(+)$1	1	117	129	20.8305
(((((.((..((	chr10:102759202-102759459(+)$1	1	21	33	23.1186
.((((((.(..(	chr20:61584225-61584516(+)$1	1	30	42	24.1355
((((.......(	chr16:87865824-87866121(-)$1	1	117	129	20.9152

#PSSM
G : 0.57	g : 0.16	C : 0.08	U : 0.06	A : 0.05	c : 0.05	
G : 0.69	g : 0.20	C : 0.03	A : 0.03	U : 0.01	a : 0.01	
G : 0.72	g : 0.18	c : 0.03	C : 0.01	U : 0.01	A : 0.01	
G : 0.72	g : 0.20	A : 0.03	u : 0.01	C : 0.01	
G : 0.66	g : 0.20	A : 0.06	C : 0.03	U : 0.01	a : 0.01	
A : 0.59	a : 0.13	U : 0.10	c : 0.08	G : 0.06	C : 0.01	
G : 0.67	g : 0.23	U : 0.03	A : 0.03	C : 0.01	
G : 0.72	g : 0.20	c : 0.03	C : 0.01	U : 0.01	
G : 0.61	g : 0.22	U : 0.08	A : 0.03	u : 0.03	C : 0.01	
G : 0.61	g : 0.23	C : 0.05	A : 0.05	U : 0.03	a : 0.01	
G : 0.71	g : 0.20	A : 0.03	a : 0.03	c : 0.01	
G : 0.59	g : 0.20	A : 0.06	U : 0.06	C : 0.03	a : 0.01	c : 0.01	

#score	1254.3389830508463
#seq	59
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_CDS_m1_run2.nuc.txt

#NT
CAGGGGGG	chr5:139493782-139494104(+)$1	322	135	143	19.3750
CAGGGGCG	chr22:45723787-45724047(+)$1	260	51	59	15.2500
CAGGCGGG	chr22:20073982-20074277(+)$1	295	150	158	15.8750
CAGGAGGG	chr13:113863706-113864078(+)$1	372	39	47	16.0000
CAGGGGGC	chr12:58217991-58218476(-)$1	485	224	232	14.7500
CAGAGGGG	chr9:139904664-139905000(-)$1	336	122	130	15.6250
CAGGGGAG	chr14:24901494-24901759(+)$1	265	124	132	15.2500
CACGGGGG	chr19:991810-992093(+)$1	283	272	280	14.8750
CAGAGGGG	chr15:80215296-80215599(-)$1	303	255	263	15.6250
CAGUGGGG	chr22:20073863-20074182(+)$1	319	87	95	15.6250
CAGAGGGG	chr12:1909051-1909335(-)$1	284	156	164	15.6250
CAGGGGGG	chr7:100027475-100027783(+)$1	308	103	111	19.3750
GAGGGGGG	chr7:99690914-99691163(-)$1	249	2	10	14.8750
CAGGGGCG	chr6:111136129-111136401(-)$1	272	197	205	15.2500
CCGGGGGG	chr7:150935307-150935575(+)$1	268	105	113	15.2500
CAGGGAGG	chr17:36760615-36760867(-)$1	252	89	97	15.1250
cggggggg	chr19:18392190-18392415(-)$1	225	50	58	15.0000
CAGGGGUG	chr7:100172779-100173061(-)$1	282	55	63	15.1250
CAGUGGGG	chr22:20073731-20074049(+)$1	318	219	227	15.6250
CCGGGGGG	chr7:150935375-150935631(+)$1	256	37	45	15.2500
CAGGUGGG	chr1:155033707-155034063(+)$1	356	292	300	16.2500
CAGUGGGG	chr19:46522367-46522729(+)$1	362	74	82	15.6250
CAGGUGGG	chr12:125270543-125270859(-)$1	316	204	212	16.2500
CAUGGGGG	chr16:28878114-28878410(+)$1	296	65	73	15.0000
CAGGGGGG	chr19:11339587-11339918(-)$1	331	27	35	19.3750
CAGGAGGG	chr14:103574564-103574856(+)$1	292	54	62	16.0000
ccgggggg	chr17:7154457-7154751(-)$1	294	74	82	15.2500
CAGCGGGG	chr15:34678935-34679214(-)$1	279	185	193	15.3750
CAGGGUGG	chr16:24802021-24802339(+)$1	318	283	291	15.1250
CAGGUGGG	chr16:30205869-30206171(+)$1	302	26	34	16.2500
CAGGGGAG	chr5:1065479-1065751(-)$1	272	59	67	15.2500
CAGGUGGG	chr8:25315648-25315940(-)$1	292	131	139	16.2500
cagguggg	chr9:140323164-140323441(+)$1	277	48	56	16.2500
CAGGGAGG	chr12:62996868-62997164(+)$1	296	117	125	15.1250
CAGGAGGG	chr20:401383-401625(+)$1	242	146	154	16.0000
CAGGCGGG	chr22:20074077-20074344(+)$1	267	55	63	15.8750
CAGGGUGG	chr14:24901231-24901497(+)$1	266	19	27	15.1250
CAGGGGGA	chr6:41748002-41748313(+)$1	311	29	37	14.7500
cauggggg	chr13:113760895-113761294(+)$1	399	39	47	15.0000

#otherMatches

#Struct PSSM
NNHHHHHH	chr1:68151570-68151884(+)$1	314	70	78	14.8750
FF}IIIII	chr5:139493782-139494104(+)$1	322	135	143	19.3750
GGGGGGG{	chr22:45723787-45724047(+)$1	260	51	59	15.2500
cdddd"""	chr22:20073982-20074277(+)$1	295	150	158	15.8750
f22iiiii	chr13:113863706-113864078(+)$1	372	39	47	16.0000
IIIIIccc	chr12:58217991-58218476(-)$1	485	224	232	14.7500
EEKKEEEE	chr9:139904664-139905000(-)$1	336	122	130	15.6250
::GGGGGG	chr14:24901494-24901759(+)$1	265	124	132	15.2500
e:::EEEE	chr19:991810-992093(+)$1	283	272	280	14.8750
h[bbpppp	chr15:80215296-80215599(-)$1	303	255	263	15.6250
JJJJJJJ:	chr22:20073863-20074182(+)$1	319	87	95	15.6250
!bb!!iii	chr12:1909051-1909335(-)$1	284	156	164	15.6250
gggggggp	chr7:100027475-100027783(+)$1	308	103	111	19.3750
!!ffffff	chr7:99690914-99691163(-)$1	249	2	10	14.8750
b:EEEEE}	chr6:111136129-111136401(-)$1	272	197	205	15.2500
ff[cccmm	chr7:150935307-150935575(+)$1	268	105	113	15.2500
lleeeeeE	chr17:36760615-36760867(-)$1	252	89	97	15.1250
a[gggggg	chr19:18392190-18392415(-)$1	225	50	58	15.0000
iiiiii:d	chr7:100172779-100173061(-)$1	282	55	63	15.1250
f:::gggg	chr22:20073731-20074049(+)$1	318	219	227	15.6250
mmddddcc	chr7:150935375-150935631(+)$1	256	37	45	15.2500
FFFF}CCC	chr1:155033707-155034063(+)$1	356	292	300	16.2500
foooooof	chr19:46522367-46522729(+)$1	362	74	82	15.6250
:::bb[ee	chr12:125270543-125270859(-)$1	316	204	212	16.2500
:::hhhhh	chr16:28878114-28878410(+)$1	296	65	73	15.0000
MMIIIIII	chr19:11339587-11339918(-)$1	331	27	35	19.3750
ffffff[b	chr14:103574564-103574856(+)$1	292	54	62	16.0000
gggggggc	chr17:7154457-7154751(-)$1	294	74	82	15.2500
bb!!dddd	chr15:34678935-34679214(-)$1	279	185	193	15.3750
========	chr16:24802021-24802339(+)$1	318	283	291	15.1250
Hddddmmm	chr16:30205869-30206171(+)$1	302	26	34	16.2500
ccc]bb22	chr5:1065479-1065751(-)$1	272	59	67	15.2500
cc>>>>>>	chr8:25315648-25315940(-)$1	292	131	139	16.2500
GGDDDDbb	chr9:140323164-140323441(+)$1	277	48	56	16.2500
HHHHHHHE	chr12:62996868-62997164(+)$1	296	117	125	15.1250
eeeebbnn	chr20:401383-401625(+)$1	242	146	154	16.0000
:dddd"""	chr22:20074077-20074344(+)$1	267	55	63	15.8750
OOCCC:a[	chr14:24901231-24901497(+)$1	266	19	27	15.1250
cccbblll	chr6:41748002-41748313(+)$1	311	29	37	14.7500
a:HHHHHH	chr13:113760895-113761294(+)$1	399	39	47	15.0000

#DB
..((((((	chr1:68151570-68151884(+)$1	1	70	78	14.8750
)).)))))	chr5:139493782-139494104(+)$1	1	135	143	19.3750
(((((((.	chr22:45723787-45724047(+)$1	1	51	59	15.2500
)((((...	chr22:20073982-20074277(+)$1	1	150	158	15.8750
)..)))))	chr13:113863706-113864078(+)$1	1	39	47	16.0000
((((((((	chr12:58217991-58218476(-)$1	1	224	232	14.7500
((..((((	chr9:139904664-139905000(-)$1	1	122	130	15.6250
..))))))	chr14:24901494-24901759(+)$1	1	124	132	15.2500
)...))))	chr19:991810-992093(+)$1	1	272	280	14.8750
(.((....	chr15:80215296-80215599(-)$1	1	255	263	15.6250
(((((((.	chr22:20073863-20074182(+)$1	1	87	95	15.6250
.((..(((	chr12:1909051-1909335(-)$1	1	156	164	15.6250
(((((((.	chr7:100027475-100027783(+)$1	1	103	111	19.3750
..((((((	chr7:99690914-99691163(-)$1	1	2	10	14.8750
).))))).	chr6:111136129-111136401(-)$1	1	197	205	15.2500
((.(((..	chr7:150935307-150935575(+)$1	1	105	113	15.2500
..))))))	chr17:36760615-36760867(-)$1	1	89	97	15.1250
(.((((((	chr19:18392190-18392415(-)$1	1	50	58	15.0000
)))))).(	chr7:100172779-100173061(-)$1	1	55	63	15.1250
)...((((	chr22:20073731-20074049(+)$1	1	219	227	15.6250
..))))))	chr7:150935375-150935631(+)$1	1	37	45	15.2500
)))).)))	chr1:155033707-155034063(+)$1	1	292	300	16.2500
(......)	chr19:46522367-46522729(+)$1	1	74	82	15.6250
...((.((	chr12:125270543-125270859(-)$1	1	204	212	16.2500
...(((((	chr16:28878114-28878410(+)$1	1	65	73	15.0000
..((((((	chr19:11339587-11339918(-)$1	1	27	35	19.3750
((((((.(	chr14:103574564-103574856(+)$1	1	54	62	16.0000
)))))))(	chr17:7154457-7154751(-)$1	1	74	82	15.2500
((..((((	chr15:34678935-34679214(-)$1	1	185	193	15.3750
((((((((	chr16:24802021-24802339(+)$1	1	283	291	15.1250
(((((...	chr16:30205869-30206171(+)$1	1	26	34	16.2500
))).))..	chr5:1065479-1065751(-)$1	1	59	67	15.2500
))......	chr8:25315648-25315940(-)$1	1	131	139	16.2500
((((((((	chr9:140323164-140323441(+)$1	1	48	56	16.2500
((((((((	chr12:62996868-62997164(+)$1	1	117	125	15.1250
((((((..	chr20:401383-401625(+)$1	1	146	154	16.0000
.((((...	chr22:20074077-20074344(+)$1	1	55	63	15.8750
..(((.(.	chr14:24901231-24901497(+)$1	1	19	27	15.1250
(((((...	chr6:41748002-41748313(+)$1	1	29	37	14.7500
).((((((	chr13:113760895-113761294(+)$1	1	39	47	15.0000

#PSSM
C : 0.85	c : 0.10	G : 0.05	
A : 0.85	C : 0.05	a : 0.05	g : 0.02	c : 0.02	
G : 0.85	g : 0.07	C : 0.02	U : 0.02	u : 0.02	
G : 0.72	g : 0.10	A : 0.07	U : 0.07	C : 0.02	
G : 0.67	U : 0.10	A : 0.07	g : 0.07	C : 0.05	u : 0.02	
G : 0.80	g : 0.10	A : 0.05	U : 0.05	
G : 0.77	g : 0.10	C : 0.05	A : 0.05	U : 0.02	
G : 0.85	g : 0.10	C : 0.02	A : 0.02	

#score	629.7500000000001
#seq	40
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_CDS_m2_run2.nuc.txt

#NT
GGAGGC	chr1:110882327-110882613(+)$1	286	138	144	17.9999
GGAGGC	chr2:227660122-227660369(-)$1	247	204	210	17.9999
GGAGGC	chr2:227659953-227660188(-)$1	235	23	29	17.9999
GGAGGC	chr1:2160056-2160328(+)$1	272	151	157	17.9999
ggaggc	chr6:1313092-1313365(+)$1	273	51	57	17.9999
GGAGGC	chr20:31022352-31022674(+)$1	322	197	203	17.9999
GGAGGC	chr16:87735789-87736041(-)$1	252	228	234	17.9999
GGAGGC	chr11:65380763-65381009(-)$1	246	157	163	17.9999
ggaggc	chr6:1313031-1313292(+)$1	261	112	118	17.9999
GGAGGC	chr5:177658672-177658954(-)$1	282	178	184	17.9999
GGAGGC	chr22:45724171-45724398(+)$1	227	37	43	17.9999
GGAGGC	chr19:57325425-57325737(-)$1	312	124	130	17.9999
GGAGGC	chr2:97482293-97482571(+)$1	278	107	113	17.9999
ggaggc	chr1:27022733-27023026(+)$1	293	259	265	17.9999
GGAGGC	chr8:144671251-144671480(-)$1	229	116	122	17.9999
GGAGGC	chr19:59074102-59074382(+)$1	280	96	102	17.9999
GGAGGC	chr22:41832354-41832607(-)$1	253	116	122	17.9999
GGAGGC	chr16:9185806-9186090(+)$1	284	81	87	17.9999
GGAGGC	chr11:65380830-65381083(-)$1	253	231	237	17.9999
GGAGGC	chr12:19592489-19592759(+)$1	270	97	103	17.9999
GGAGGC	chr6:31599833-31600091(+)$1	258	140	146	17.9999
GGAGGC	chr16:89346795-89347072(-)$1	277	155	161	17.9999
GGAGGC	chr16:89346902-89347153(-)$1	251	236	242	17.9999
GGAGGC	chr8:94746313-94746586(-)$1	273	19	25	17.9999
GGAGGC	chr8:94746254-94746483(-)$1	229	15	21	17.9999
ggaggc	chr6:1312877-1313150(+)$1	273	266	272	17.9999
GGAGGC	chr22:45126647-45126881(+)$1	234	80	86	17.9999
GGAGGC	chr17:37618278-37618527(+)$1	249	121	127	17.9999
GGAGGC	chr22:21799735-21800003(+)$1	268	117	123	17.9999
GGAGGC	chr16:8953051-8953357(+)$1	306	117	123	17.9999
GGAGGC	chr8:144940403-144940695(-)$1	292	62	68	17.9999
ggaggc	chr10:101379892-101380167(-)$1	275	206	212	17.9999
ggaggc	chr6:170123909-170124170(-)$1	261	102	108	17.9999
GGAGGC	chr19:50099510-50099770(+)$1	260	249	255	17.9999
GGAGGC	chr8:94746592-94746929(-)$1	337	149	155	17.9999
GGAGGC	chr8:144940504-144940777(-)$1	273	144	150	17.9999
GGAGGC	chr16:87735916-87736163(-)$1	247	30	36	17.9999
GGAGGC	chr8:144940605-144940874(-)$1	269	241	247	17.9999
GGAGGC	chr6:138751709-138751948(-)$1	239	189	195	17.9999
GGAGGC	chr6:31600096-31600363(+)$1	267	23	29	17.9999
GGAGGC	chr17:17698607-17698864(+)$1	257	114	120	17.9999
GGAGGC	chr16:87735387-87735633(-)$1	246	209	215	17.9999
GGAGGC	chr16:89346251-89346497(-)$1	246	210	216	17.9999
GGAGGC	chr10:77159500-77159768(-)$1	268	227	233	17.9999
GGAGGC	chr16:89346582-89346830(-)$1	248	156	162	17.9999

#otherMatches

#Struct PSSM
$$$$hh	chr6:31868001-31868253(-)$1	252	17	23	17.9999
D~~~~H	chr1:110882327-110882613(+)$1	286	138	144	17.9999
GGGGGG	chr2:227660122-227660369(-)$1	247	204	210	17.9999
ddddoo	chr2:227659953-227660188(-)$1	235	23	29	17.9999
nnnbb2	chr1:2160056-2160328(+)$1	272	151	157	17.9999
NNNNBB	chr6:1313092-1313365(+)$1	273	51	57	17.9999
gg!!bb	chr20:31022352-31022674(+)$1	322	197	203	17.9999
ffoooo	chr16:87735789-87736041(-)$1	252	228	234	17.9999
ff[bb[	chr11:65380763-65381009(-)$1	246	157	163	17.9999
e[bbbb	chr6:1313031-1313292(+)$1	261	112	118	17.9999
FKKAcc	chr5:177658672-177658954(-)$1	282	178	184	17.9999
FFDDDD	chr22:45724171-45724398(+)$1	227	37	43	17.9999
EEEddd	chr19:57325425-57325737(-)$1	312	124	130	17.9999
nnnccc	chr2:97482293-97482571(+)$1	278	107	113	17.9999
bb]fff	chr1:27022733-27023026(+)$1	293	259	265	17.9999
qqqeee	chr8:144671251-144671480(-)$1	229	116	122	17.9999
]ccccc	chr19:59074102-59074382(+)$1	280	96	102	17.9999
:CCCBB	chr22:41832354-41832607(-)$1	253	116	122	17.9999
fmmmmf	chr16:9185806-9186090(+)$1	284	81	87	17.9999
####bb	chr11:65380830-65381083(-)$1	253	231	237	17.9999
c!!ccc	chr12:19592489-19592759(+)$1	270	97	103	17.9999
hhnnnn	chr6:31599833-31600091(+)$1	258	140	146	17.9999
eeeee[	chr16:89346795-89347072(-)$1	277	155	161	17.9999
llffff	chr16:89346902-89347153(-)$1	251	236	242	17.9999
E::bb[	chr8:94746313-94746586(-)$1	273	19	25	17.9999
[ddddl	chr8:94746254-94746483(-)$1	229	15	21	17.9999
GGGGGG	chr6:1312877-1313150(+)$1	273	266	272	17.9999
gggggg	chr22:45126647-45126881(+)$1	234	80	86	17.9999
EE{BBA	chr17:37618278-37618527(+)$1	249	121	127	17.9999
DD}CCC	chr22:21799735-21800003(+)$1	268	117	123	17.9999
GGDDDD	chr16:8953051-8953357(+)$1	306	117	123	17.9999
EE{EEE	chr8:144940403-144940695(-)$1	292	62	68	17.9999
6666dd	chr10:101379892-101380167(-)$1	275	206	212	17.9999
[cccbb	chr6:170123909-170124170(-)$1	261	102	108	17.9999
FFF}CC	chr19:50099510-50099770(+)$1	260	249	255	17.9999
f::ddd	chr8:94746592-94746929(-)$1	337	149	155	17.9999
####dd	chr8:144940504-144940777(-)$1	273	144	150	17.9999
GGGGGM	chr16:87735916-87736163(-)$1	247	30	36	17.9999
]a333a	chr8:144940605-144940874(-)$1	269	241	247	17.9999
CC:ddd	chr6:138751709-138751948(-)$1	239	189	195	17.9999
hhhhhh	chr6:31600096-31600363(+)$1	267	23	29	17.9999
:::CCC	chr17:17698607-17698864(+)$1	257	114	120	17.9999
======	chr16:87735387-87735633(-)$1	246	209	215	17.9999
IIIIII	chr16:89346251-89346497(-)$1	246	210	216	17.9999
::DDDD	chr10:77159500-77159768(-)$1	268	227	233	17.9999
f22eee	chr16:89346582-89346830(-)$1	248	156	162	17.9999

#DB
....((	chr6:31868001-31868253(-)$1	1	17	23	17.9999
)....)	chr1:110882327-110882613(+)$1	1	138	144	17.9999
))))))	chr2:227660122-227660369(-)$1	1	204	210	17.9999
((((..	chr2:227659953-227660188(-)$1	1	23	29	17.9999
...)).	chr1:2160056-2160328(+)$1	1	151	157	17.9999
....((	chr6:1313092-1313365(+)$1	1	51	57	17.9999
((..((	chr20:31022352-31022674(+)$1	1	197	203	17.9999
((....	chr16:87735789-87736041(-)$1	1	228	234	17.9999
((.((.	chr11:65380763-65381009(-)$1	1	157	163	17.9999
(.((((	chr6:1313031-1313292(+)$1	1	112	118	17.9999
(..(((	chr5:177658672-177658954(-)$1	1	178	184	17.9999
((((((	chr22:45724171-45724398(+)$1	1	37	43	17.9999
)))(((	chr19:57325425-57325737(-)$1	1	124	130	17.9999
...)))	chr2:97482293-97482571(+)$1	1	107	113	17.9999
)).)))	chr1:27022733-27023026(+)$1	1	259	265	17.9999
...)))	chr8:144671251-144671480(-)$1	1	116	122	17.9999
.)))))	chr19:59074102-59074382(+)$1	1	96	102	17.9999
.)))))	chr22:41832354-41832607(-)$1	1	116	122	17.9999
(....)	chr16:9185806-9186090(+)$1	1	81	87	17.9999
....((	chr11:65380830-65381083(-)$1	1	231	237	17.9999
(..(((	chr12:19592489-19592759(+)$1	1	97	103	17.9999
((....	chr6:31599833-31600091(+)$1	1	140	146	17.9999
(((((.	chr16:89346795-89347072(-)$1	1	155	161	17.9999
..))))	chr16:89346902-89347153(-)$1	1	236	242	17.9999
(..((.	chr8:94746313-94746586(-)$1	1	19	25	17.9999
.((((.	chr8:94746254-94746483(-)$1	1	15	21	17.9999
))))))	chr6:1312877-1313150(+)$1	1	266	272	17.9999
((((((	chr22:45126647-45126881(+)$1	1	80	86	17.9999
((.(((	chr17:37618278-37618527(+)$1	1	121	127	17.9999
)).)))	chr22:21799735-21800003(+)$1	1	117	123	17.9999
((((((	chr16:8953051-8953357(+)$1	1	117	123	17.9999
((.(((	chr8:144940403-144940695(-)$1	1	62	68	17.9999
....))	chr10:101379892-101380167(-)$1	1	206	212	17.9999
.(((((	chr6:170123909-170124170(-)$1	1	102	108	17.9999
))).))	chr19:50099510-50099770(+)$1	1	249	255	17.9999
)..(((	chr8:94746592-94746929(-)$1	1	149	155	17.9999
....((	chr8:144940504-144940777(-)$1	1	144	150	17.9999
(((((.	chr16:87735916-87736163(-)$1	1	30	36	17.9999
.)...)	chr8:144940605-144940874(-)$1	1	241	247	17.9999
)).(((	chr6:138751709-138751948(-)$1	1	189	195	17.9999
))))))	chr6:31600096-31600363(+)$1	1	23	29	17.9999
...(((	chr17:17698607-17698864(+)$1	1	114	120	17.9999
))))))	chr16:87735387-87735633(-)$1	1	209	215	17.9999
))))))	chr16:89346251-89346497(-)$1	1	210	216	17.9999
..))))	chr10:77159500-77159768(-)$1	1	227	233	17.9999
)..)))	chr16:89346582-89346830(-)$1	1	156	162	17.9999

#PSSM
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
A : 0.86	a : 0.13	
G : 0.86	g : 0.13	
G : 0.86	g : 0.13	
C : 0.86	c : 0.13	

#score	827.9999999999999
#seq	46
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_transcript_m3_run1.nuc.txt

#NT
UGGGG	chr15:63797049-63797316(+)$1	267	110	115	14.9999
UGGGG	chr10:51572104-51572398(+)$1	294	21	26	14.9999
UGGGG	chr1:39457340-39457576(+)$1	236	118	123	14.9999
UGGGG	chr18:77674932-77675173(-)$1	241	57	62	14.9999
UGGGG	chr4:52710569-52710834(+)$1	265	197	202	14.9999
UGGGG	chr2:3250272-3250591(-)$1	319	243	248	14.9999
UGGGG	chr2:240322482-240322749(-)$1	267	54	59	14.9999
UGGGG	chr1:44029510-44029795(+)$1	285	82	87	14.9999
UGGGG	chr19:879192-879452(-)$1	260	5	10	14.9999
UGGGG	chr19:3543851-3544101(-)$1	250	199	204	14.9999
UGGGG	chr19:42751654-42751906(-)$1	252	2	7	14.9999
ugggg	chr21:44395204-44395443(+)$1	239	46	51	14.9999
UGGGG	chr12:16500588-16500885(+)$1	297	138	143	14.9999
UGGGG	chr4:74123518-74123794(-)$1	276	126	131	14.9999
UGGGG	chr17:72868795-72869074(-)$1	279	29	34	14.9999
UGGGG	chr16:50588943-50589198(+)$1	255	115	120	14.9999
ugggg	chr20:25529880-25530124(-)$1	244	174	179	14.9999
UGGGG	chr7:2415157-2415527(+)$1	370	16	21	14.9999
UGGGG	chr21:34941931-34942259(+)$1	328	130	135	14.9999
UGGGG	chr2:241906224-241906518(-)$1	294	100	105	14.9999
UGGGG	chr20:35484333-35484598(-)$1	265	103	108	14.9999
UGGGG	chr4:78078294-78078557(+)$1	263	52	57	14.9999
UGGGG	chr1:973967-974217(+)$1	250	112	117	14.9999
UGGGG	chr11:65192260-65192498(+)$1	238	85	90	14.9999
UGGGG	chr2:101437074-101437330(+)$1	256	102	107	14.9999
UGGGG	chr22:50624631-50624947(+)$1	316	12	17	14.9999
UGGGG	chr10:104489612-104489940(+)$1	328	34	39	14.9999
UGGGG	chr13:113764534-113764781(+)$1	247	1	6	14.9999
UGGGG	chr1:12674834-12675100(-)$1	266	99	104	14.9999
ugggg	chr19:50149403-50149692(+)$1	289	75	80	14.9999
UGGGG	chr3:9519593-9519872(+)$1	279	80	85	14.9999
UGGGG	chr7:47525358-47525650(-)$1	292	210	215	14.9999
UGGGG	chr17:76777887-76778142(-)$1	255	103	108	14.9999
UGGGG	chr20:35484907-35485154(-)$1	247	83	88	14.9999
ugggg	chr10:116254986-116255318(-)$1	332	252	257	14.9999
UGGGG	chr16:8960791-8961053(-)$1	262	75	80	14.9999
UGGGG	chr22:43410602-43410875(-)$1	273	63	68	14.9999
UGGGG	chr19:49495154-49495427(-)$1	273	66	71	14.9999
UGGGG	chr15:80215088-80215365(-)$1	277	43	48	14.9999
UGGGG	chr6:158986662-158986924(+)$1	262	106	111	14.9999
UGGGG	chr3:48468855-48469131(-)$1	276	79	84	14.9999
ugggg	chr7:99949417-99949677(+)$1	260	33	38	14.9999
UGGGG	chr19:35491446-35491731(+)$1	285	19	24	14.9999
UGGGG	chr17:55333990-55334264(+)$1	274	69	74	14.9999
UGGGG	chr21:45731451-45731685(+)$1	234	50	55	14.9999
UGGGG	chr18:47340585-47340789(+)$1	204	41	46	14.9999
UGGGG	chr16:69458816-69459070(+)$1	254	37	42	14.9999
UGGGG	chr17:48547780-48548051(+)$1	271	70	75	14.9999
UGGGG	chr4:140656508-140656774(+)$1	266	38	43	14.9999
UGGGG	chr20:60906414-60906683(-)$1	269	82	87	14.9999
UGGGG	chr6:43745733-43745994(+)$1	261	57	62	14.9999
ugggg	chr13:113377968-113378222(+)$1	254	56	61	14.9999
UGGGG	chr19:57351532-57351764(-)$1	232	36	41	14.9999
UGGGG	chr9:38620233-38620454(-)$1	221	15	20	14.9999
UGGGG	chr1:16470335-16470592(-)$1	257	63	68	14.9999
UGGGG	chr11:65192217-65192453(+)$1	236	128	133	14.9999
UGGGG	chr8:144676722-144676955(-)$1	233	204	209	14.9999
UGGGG	chr21:44527276-44527549(-)$1	273	207	212	14.9999
UGGGG	chr1:2198891-2199147(+)$1	256	120	125	14.9999
UGGGG	chr16:57220334-57220617(+)$1	283	97	102	14.9999
ugggg	chr22:33155465-33155759(-)$1	294	8	13	14.9999
UGGGG	chr5:81573845-81574189(-)$1	344	93	98	14.9999
UGGGG	chr20:3190166-3190472(+)$1	306	47	52	14.9999
UGGGG	chr2:65356611-65356865(-)$1	254	123	128	14.9999
UGGGG	chr6:167345503-167345776(-)$1	273	6	11	14.9999
ugggg	chr9:136223054-136223330(-)$1	276	26	31	14.9999
UGGGG	chr2:102508230-102508536(+)$1	306	85	90	14.9999

#otherMatches

#Struct PSSM
EEEKK	chr22:50647314-50647590(+)$1	276	35	40	14.9999
cc]bb	chr15:63797049-63797316(+)$1	267	110	115	14.9999
BLLLC	chr10:51572104-51572398(+)$1	294	21	26	14.9999
NNNCC	chr1:39457340-39457576(+)$1	236	118	123	14.9999
ggggg	chr18:77674932-77675173(-)$1	241	57	62	14.9999
::fff	chr4:52710569-52710834(+)$1	265	197	202	14.9999
ddddd	chr2:3250272-3250591(-)$1	319	243	248	14.9999
ddd]b	chr2:240322482-240322749(-)$1	267	54	59	14.9999
d[a$$	chr1:44029510-44029795(+)$1	285	82	87	14.9999
{A{CC	chr19:879192-879452(-)$1	260	5	10	14.9999
dddbb	chr19:3543851-3544101(-)$1	250	199	204	14.9999
:ffff	chr19:42751654-42751906(-)$1	252	2	7	14.9999
dd[a[	chr21:44395204-44395443(+)$1	239	46	51	14.9999
emmmm	chr12:16500588-16500885(+)$1	297	138	143	14.9999
:::dd	chr4:74123518-74123794(-)$1	276	126	131	14.9999
EEEEE	chr17:72868795-72869074(-)$1	279	29	34	14.9999
G{A{A	chr16:50588943-50589198(+)$1	255	115	120	14.9999
cc[a[	chr20:25529880-25530124(-)$1	244	174	179	14.9999
llddd	chr7:2415157-2415527(+)$1	370	16	21	14.9999
ggggg	chr21:34941931-34942259(+)$1	328	130	135	14.9999
:::::	chr2:241906224-241906518(-)$1	294	100	105	14.9999
ggggg	chr20:35484333-35484598(-)$1	265	103	108	14.9999
mmeee	chr4:78078294-78078557(+)$1	263	52	57	14.9999
dddd[	chr1:973967-974217(+)$1	250	112	117	14.9999
iiiii	chr11:65192260-65192498(+)$1	238	85	90	14.9999
JJJJJ	chr2:101437074-101437330(+)$1	256	102	107	14.9999
::::d	chr22:50624631-50624947(+)$1	316	12	17	14.9999
iiii#	chr10:104489612-104489940(+)$1	328	34	39	14.9999
:DDDD	chr13:113764534-113764781(+)$1	247	1	6	14.9999
[eeee	chr1:12674834-12675100(-)$1	266	99	104	14.9999
ellle	chr19:50149403-50149692(+)$1	289	75	80	14.9999
:BB{I	chr3:9519593-9519872(+)$1	279	80	85	14.9999
2iiii	chr7:47525358-47525650(-)$1	292	210	215	14.9999
d[acc	chr17:76777887-76778142(-)$1	255	103	108	14.9999
iiii[	chr20:35484907-35485154(-)$1	247	83	88	14.9999
HHHHH	chr10:116254986-116255318(-)$1	332	252	257	14.9999
g:iii	chr16:8960791-8961053(-)$1	262	75	80	14.9999
d]ccc	chr22:43410602-43410875(-)$1	273	63	68	14.9999
b]a33	chr19:49495154-49495427(-)$1	273	66	71	14.9999
!gggg	chr15:80215088-80215365(-)$1	277	43	48	14.9999
a[ddd	chr6:158986662-158986924(+)$1	262	106	111	14.9999
d[bbo	chr3:48468855-48469131(-)$1	276	79	84	14.9999
f[ddd	chr7:99949417-99949677(+)$1	260	33	38	14.9999
:::::	chr19:35491446-35491731(+)$1	285	19	24	14.9999
mmmcc	chr17:55333990-55334264(+)$1	274	69	74	14.9999
iiiii	chr21:45731451-45731685(+)$1	234	50	55	14.9999
BKKHH	chr18:47340585-47340789(+)$1	204	41	46	14.9999
IIII{	chr16:69458816-69459070(+)$1	254	37	42	14.9999
EEENN	chr17:48547780-48548051(+)$1	271	70	75	14.9999
C{DDD	chr4:140656508-140656774(+)$1	266	38	43	14.9999
eeGGG	chr20:60906414-60906683(-)$1	269	82	87	14.9999
b]ddd	chr6:43745733-43745994(+)$1	261	57	62	14.9999
b]hhh	chr13:113377968-113378222(+)$1	254	56	61	14.9999
EEEEN	chr19:57351532-57351764(-)$1	232	36	41	14.9999
ppa]d	chr9:38620233-38620454(-)$1	221	15	20	14.9999
rrrrr	chr1:16470335-16470592(-)$1	257	63	68	14.9999
iiiii	chr11:65192217-65192453(+)$1	236	128	133	14.9999
pppcc	chr8:144676722-144676955(-)$1	233	204	209	14.9999
::HHH	chr21:44527276-44527549(-)$1	273	207	212	14.9999
hhhac	chr1:2198891-2199147(+)$1	256	120	125	14.9999
ee###	chr16:57220334-57220617(+)$1	283	97	102	14.9999
GGGG:	chr22:33155465-33155759(-)$1	294	8	13	14.9999
d333f	chr5:81573845-81574189(-)$1	344	93	98	14.9999
eeeee	chr20:3190166-3190472(+)$1	306	47	52	14.9999
33ddd	chr2:65356611-65356865(-)$1	254	123	128	14.9999
cc[a"	chr6:167345503-167345776(-)$1	273	6	11	14.9999
f333e	chr9:136223054-136223330(-)$1	276	26	31	14.9999
bbb[b	chr2:102508230-102508536(+)$1	306	85	90	14.9999

#DB
(((..	chr22:50647314-50647590(+)$1	1	35	40	14.9999
)).))	chr15:63797049-63797316(+)$1	1	110	115	14.9999
(...(	chr10:51572104-51572398(+)$1	1	21	26	14.9999
...((	chr1:39457340-39457576(+)$1	1	118	123	14.9999
)))))	chr18:77674932-77675173(-)$1	1	57	62	14.9999
..(((	chr4:52710569-52710834(+)$1	1	197	202	14.9999
)))((	chr2:3250272-3250591(-)$1	1	243	248	14.9999
))).)	chr2:240322482-240322749(-)$1	1	54	59	14.9999
(.(..	chr1:44029510-44029795(+)$1	1	82	87	14.9999
.(.((	chr19:879192-879452(-)$1	1	5	10	14.9999
)))((	chr19:3543851-3544101(-)$1	1	199	204	14.9999
.((((	chr19:42751654-42751906(-)$1	1	2	7	14.9999
((.(.	chr21:44395204-44395443(+)$1	1	46	51	14.9999
(....	chr12:16500588-16500885(+)$1	1	138	143	14.9999
...((	chr4:74123518-74123794(-)$1	1	126	131	14.9999
(((((	chr17:72868795-72869074(-)$1	1	29	34	14.9999
(.(.(	chr16:50588943-50589198(+)$1	1	115	120	14.9999
((.(.	chr20:25529880-25530124(-)$1	1	174	179	14.9999
..)))	chr7:2415157-2415527(+)$1	1	16	21	14.9999
)))))	chr21:34941931-34942259(+)$1	1	130	135	14.9999
.....	chr2:241906224-241906518(-)$1	1	100	105	14.9999
(((((	chr20:35484333-35484598(-)$1	1	103	108	14.9999
..)))	chr4:78078294-78078557(+)$1	1	52	57	14.9999
((((.	chr1:973967-974217(+)$1	1	112	117	14.9999
)))))	chr11:65192260-65192498(+)$1	1	85	90	14.9999
(((((	chr2:101437074-101437330(+)$1	1	102	107	14.9999
....(	chr22:50624631-50624947(+)$1	1	12	17	14.9999
((((.	chr10:104489612-104489940(+)$1	1	34	39	14.9999
.((((	chr13:113764534-113764781(+)$1	1	1	6	14.9999
.((((	chr1:12674834-12675100(-)$1	1	99	104	14.9999
(...)	chr19:50149403-50149692(+)$1	1	75	80	14.9999
.((.(	chr3:9519593-9519872(+)$1	1	80	85	14.9999
.))))	chr7:47525358-47525650(-)$1	1	210	215	14.9999
(.(((	chr17:76777887-76778142(-)$1	1	103	108	14.9999
((((.	chr20:35484907-35485154(-)$1	1	83	88	14.9999
)))))	chr10:116254986-116255318(-)$1	1	252	257	14.9999
).(((	chr16:8960791-8961053(-)$1	1	75	80	14.9999
).)))	chr22:43410602-43410875(-)$1	1	63	68	14.9999
).)..	chr19:49495154-49495427(-)$1	1	66	71	14.9999
.((((	chr15:80215088-80215365(-)$1	1	43	48	14.9999
(.(((	chr6:158986662-158986924(+)$1	1	106	111	14.9999
(.((.	chr3:48468855-48469131(-)$1	1	79	84	14.9999
(.(((	chr7:99949417-99949677(+)$1	1	33	38	14.9999
.....	chr19:35491446-35491731(+)$1	1	19	24	14.9999
...))	chr17:55333990-55334264(+)$1	1	69	74	14.9999
)))))	chr21:45731451-45731685(+)$1	1	50	55	14.9999
(..((	chr18:47340585-47340789(+)$1	1	41	46	14.9999
((((.	chr16:69458816-69459070(+)$1	1	37	42	14.9999
(((..	chr17:48547780-48548051(+)$1	1	70	75	14.9999
(.(((	chr4:140656508-140656774(+)$1	1	38	43	14.9999
))(((	chr20:60906414-60906683(-)$1	1	82	87	14.9999
).)))	chr6:43745733-43745994(+)$1	1	57	62	14.9999
).)))	chr13:113377968-113378222(+)$1	1	56	61	14.9999
((((.	chr19:57351532-57351764(-)$1	1	36	41	14.9999
..).)	chr9:38620233-38620454(-)$1	1	15	20	14.9999
.....	chr1:16470335-16470592(-)$1	1	63	68	14.9999
)))))	chr11:65192217-65192453(+)$1	1	128	133	14.9999
...))	chr8:144676722-144676955(-)$1	1	204	209	14.9999
..)))	chr21:44527276-44527549(-)$1	1	207	212	14.9999
(((((	chr1:2198891-2199147(+)$1	1	120	125	14.9999
((...	chr16:57220334-57220617(+)$1	1	97	102	14.9999
((((.	chr22:33155465-33155759(-)$1	1	8	13	14.9999
)...)	chr5:81573845-81574189(-)$1	1	93	98	14.9999
)))))	chr20:3190166-3190472(+)$1	1	47	52	14.9999
..)))	chr2:65356611-65356865(-)$1	1	123	128	14.9999
((.(.	chr6:167345503-167345776(-)$1	1	6	11	14.9999
)...)	chr9:136223054-136223330(-)$1	1	26	31	14.9999
)((.(	chr2:102508230-102508536(+)$1	1	85	90	14.9999

#PSSM
U : 0.88	u : 0.11	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	

#score	1019.9999999999995
#seq	68
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_CDS_m1_run2.nuc.txt

#NT
CCUGCUGUG	chr1:43212733-43213023(-)$1	290	261	270	15.4523
CCUGCUGGA	chr16:279049-279353(-)$1	304	41	50	15.5714
CCUGCUGUG	chr16:87377026-87377317(-)$1	291	251	260	15.4523
UCUGCUUGG	chr16:88877768-88878041(-)$1	273	158	167	12.4761
CCUGAUGGG	chr1:78098328-78098595(-)$1	267	213	222	14.9761
CCAGGUGGG	chr14:78227256-78227525(-)$1	269	65	74	11.7619
UCUGCAGGG	chr17:42953132-42953415(-)$1	283	254	263	13.4285
CCUGCUGUG	chr20:3172239-3172488(-)$1	249	96	105	15.4523
GCUGCUGGC	chr9:140347013-140347254(-)$1	241	161	170	14.7380
CCUGCUGGG	chr7:150020569-150020829(+)$1	260	154	163	19.1428
CCUGCAGGG	chr9:74979409-74979681(-)$1	272	62	71	15.5714
GCUGCUGGC	chr20:48759844-48760142(-)$1	298	57	66	14.7380
GCUGGUGGG	chr10:3823637-3823884(-)$1	247	84	93	13.9047
GCUGCUGGC	chr22:20112884-20113126(+)$1	242	43	52	14.7380
CCUGCUCGG	chr1:11898639-11898887(+)$1	248	216	225	14.6190
CCUGCUGGA	chr8:27629850-27630139(-)$1	289	137	146	15.5714
GCAGCUGGG	chr8:145140339-145140582(+)$1	243	208	217	14.6190
GCCGCUGGG	chr1:162336931-162337186(+)$1	255	10	19	14.0238
ACUACUGGG	chr22:31654325-31654604(+)$1	279	22	31	12.7142
CUUGCUGGG	chr9:139723832-139724108(+)$1	276	222	231	14.6190
CCUGCUGAC	chr1:8073199-8073439(-)$1	240	59	68	11.7619
CCAGCUGGG	chr1:43396149-43396368(-)$1	219	35	44	15.8095
acuucuggg	chr1:1341005-1341257(-)$1	252	196	205	12.8333
CAUGCUGGG	chr3:38167813-38168084(-)$1	271	128	137	14.6190
CCAGCGGGG	chr16:70698650-70698890(-)$1	240	12	21	11.7619
CCUGCUGGG	chr21:45507700-45507977(+)$1	277	162	171	19.1428
CCAGAUGGG	chr17:72860095-72860339(-)$1	244	19	28	11.6428
GCUGCUGGG	chr20:43052819-43053100(+)$1	281	64	73	17.9523
UGUGCUGGG	chr19:48978137-48978394(+)$1	257	241	250	12.4761
CCUCCUGGG	chr19:1398695-1399006(-)$1	311	36	45	14.9761
GCAGCUGGG	chr16:66864539-66864852(-)$1	313	55	64	14.6190
GCUGCUAGG	chr15:41099389-41099642(-)$1	253	39	48	13.4285
GCUUCUGGG	chr7:5429915-5430156(-)$1	241	89	98	13.7857
CCUGCAGGA	chr7:137569556-137569801(-)$1	245	32	41	12.0000
GCUGCAGGG	chrX:70469651-70469986(-)$1	335	179	188	14.3809
UCUGCCGGG	chr19:1271398-1271635(+)$1	237	7	16	12.9523
GCUCCUGGG	chr2:182757286-182757556(+)$1	270	13	22	13.7857
ACUGCAGGG	chr20:61299181-61299434(+)$1	253	239	248	13.4285
ACUGGUGGG	chr9:97842981-97843250(+)$1	269	205	214	12.9523
CCUGCUGUC	chr17:4800039-4800289(+)$1	250	95	104	12.2380
CCUGCUGUC	chr7:142962140-142962388(+)$1	248	189	198	12.2380

#otherMatches

#Struct PSSM
::ffffff!	chr1:193028837-193029097(+)$1	260	88	97	15.2142
ddddppppp	chr1:43212733-43213023(-)$1	290	261	270	15.4523
MMMCCC{DD	chr16:279049-279353(-)$1	304	41	50	15.5714
IIIIIIIEE	chr16:87377026-87377317(-)$1	291	251	260	15.4523
ggggg]ccc	chr16:88877768-88878041(-)$1	273	158	167	12.4761
bbmmmmbb:	chr1:78098328-78098595(-)$1	267	213	222	14.9761
a22hhhhhh	chr14:78227256-78227525(-)$1	269	65	74	11.7619
EEE}HHHHH	chr17:42953132-42953415(-)$1	283	254	263	13.4285
c]bbccc]d	chr20:3172239-3172488(-)$1	249	96	105	15.4523
gggg:CCCZ	chr9:140347013-140347254(-)$1	241	161	170	14.7380
cc[ddddll	chr7:150020569-150020829(+)$1	260	154	163	19.1428
ddmmmmddd	chr9:74979409-74979681(-)$1	272	62	71	15.5714
EEEEE{BBb	chr20:48759844-48760142(-)$1	298	57	66	14.7380
iiiiiii]b	chr10:3823637-3823884(-)$1	247	84	93	13.9047
nnnneeeee	chr22:20112884-20113126(+)$1	242	43	52	14.7380
ccccc[ccc	chr1:11898639-11898887(+)$1	248	216	225	14.6190
ffffffmmm	chr8:27629850-27630139(-)$1	289	137	146	15.5714
oooeeeeeG	chr8:145140339-145140582(+)$1	243	208	217	14.6190
bbhhhhhhh	chr1:162336931-162337186(+)$1	255	10	19	14.0238
nnnnbb]dd	chr22:31654325-31654604(+)$1	279	22	31	12.7142
eeegggggg	chr9:139723832-139724108(+)$1	276	222	231	14.6190
'cccbb!!c	chr1:8073199-8073439(-)$1	240	59	68	11.7619
mmmbb]ccc	chr1:43396149-43396368(-)$1	219	35	44	15.8095
bggggggg]	chr1:1341005-1341257(-)$1	252	196	205	12.8333
c]ddddDDD	chr3:38167813-38168084(-)$1	271	128	137	14.6190
NNNEEEEEL	chr16:70698650-70698890(-)$1	240	12	21	11.7619
ccclllccc	chr21:45507700-45507977(+)$1	277	162	171	19.1428
EEE:EEEEE	chr17:72860095-72860339(-)$1	244	19	28	11.6428
dddFFFFFF	chr20:43052819-43053100(+)$1	281	64	73	17.9523
GGGGG}HHH	chr19:48978137-48978394(+)$1	257	241	250	12.4761
[eeeeelll	chr19:1398695-1399006(-)$1	311	36	45	14.9761
{EEEEE{DD	chr16:66864539-66864852(-)$1	313	55	64	14.6190
ccc]bb]bb	chr15:41099389-41099642(-)$1	253	39	48	13.4285
=======22	chr7:5429915-5430156(-)$1	241	89	98	13.7857
eeeee[ddd	chr7:137569556-137569801(-)$1	245	32	41	12.0000
ee22fffff	chrX:70469651-70469986(-)$1	335	179	188	14.3809
DDDMMMMFF	chr19:1271398-1271635(+)$1	237	7	16	12.9523
ddggggggg	chr2:182757286-182757556(+)$1	270	13	22	13.7857
dHHHHHHHH	chr20:61299181-61299434(+)$1	253	239	248	13.4285
ee22eeeee	chr9:97842981-97843250(+)$1	269	205	214	12.9523
FFFFccc[e	chr17:4800039-4800289(+)$1	250	95	104	12.2380
:::::gggg	chr7:142962140-142962388(+)$1	248	189	198	12.2380

#DB
..((((((.	chr1:193028837-193029097(+)$1	1	88	97	15.2142
((((.....	chr1:43212733-43213023(-)$1	1	261	270	15.4523
...(((.((	chr16:279049-279353(-)$1	1	41	50	15.5714
)))))))))	chr16:87377026-87377317(-)$1	1	251	260	15.4523
))))).)))	chr16:88877768-88878041(-)$1	1	158	167	12.4761
((....)).	chr1:78098328-78098595(-)$1	1	213	222	14.9761
)..))))))	chr14:78227256-78227525(-)$1	1	65	74	11.7619
))).)))))	chr17:42953132-42953415(-)$1	1	254	263	13.4285
).))))).)	chr20:3172239-3172488(-)$1	1	96	105	15.4523
)))).))).	chr9:140347013-140347254(-)$1	1	161	170	14.7380
((.((((..	chr7:150020569-150020829(+)$1	1	154	163	19.1428
((....)))	chr9:74979409-74979681(-)$1	1	62	71	15.5714
(((((.(((	chr20:48759844-48760142(-)$1	1	57	66	14.7380
))))))).)	chr10:3823637-3823884(-)$1	1	84	93	13.9047
....)))))	chr22:20112884-20113126(+)$1	1	43	52	14.7380
(((((.(((	chr1:11898639-11898887(+)$1	1	216	225	14.6190
((((((...	chr8:27629850-27630139(-)$1	1	137	146	15.5714
...))))))	chr8:145140339-145140582(+)$1	1	208	217	14.6190
(((((((((	chr1:162336931-162337186(+)$1	1	10	19	14.0238
....)).))	chr22:31654325-31654604(+)$1	1	22	31	12.7142
(((((((((	chr9:139723832-139724108(+)$1	1	222	231	14.6190
.(((((..(	chr1:8073199-8073439(-)$1	1	59	68	11.7619
...)).)))	chr1:43396149-43396368(-)$1	1	35	44	15.8095
)))))))).	chr1:1341005-1341257(-)$1	1	196	205	12.8333
).))))(((	chr3:38167813-38168084(-)$1	1	128	137	14.6190
...(((((.	chr16:70698650-70698890(-)$1	1	12	21	11.7619
(((...)))	chr21:45507700-45507977(+)$1	1	162	171	19.1428
(((.(((((	chr17:72860095-72860339(-)$1	1	19	28	11.6428
)))((((((	chr20:43052819-43053100(+)$1	1	64	73	17.9523
))))).)))	chr19:48978137-48978394(+)$1	1	241	250	12.4761
.(((((...	chr19:1398695-1399006(-)$1	1	36	45	14.9761
.(((((.((	chr16:66864539-66864852(-)$1	1	55	64	14.6190
))).)).))	chr15:41099389-41099642(-)$1	1	39	48	13.4285
)))))))..	chr7:5429915-5430156(-)$1	1	89	98	13.7857
(((((.(((	chr7:137569556-137569801(-)$1	1	32	41	12.0000
))..)))))	chrX:70469651-70469986(-)$1	1	179	188	14.3809
(((....((	chr19:1271398-1271635(+)$1	1	7	16	12.9523
(((((((((	chr2:182757286-182757556(+)$1	1	13	22	13.7857
)))))))))	chr20:61299181-61299434(+)$1	1	239	248	13.4285
))..)))))	chr9:97842981-97843250(+)$1	1	205	214	12.9523
))))(((.(	chr17:4800039-4800289(+)$1	1	95	104	12.2380
.....((((	chr7:142962140-142962388(+)$1	1	189	198	12.2380

#PSSM
C : 0.52	G : 0.28	U : 0.09	A : 0.07	a : 0.02	
C : 0.90	U : 0.02	c : 0.02	A : 0.02	G : 0.02	
U : 0.78	A : 0.14	G : 0.02	C : 0.02	u : 0.02	
G : 0.88	C : 0.04	A : 0.02	u : 0.02	U : 0.02	
C : 0.85	G : 0.07	A : 0.04	c : 0.02	
U : 0.80	A : 0.11	u : 0.02	G : 0.02	C : 0.02	
G : 0.90	U : 0.02	C : 0.02	g : 0.02	A : 0.02	
G : 0.83	U : 0.11	A : 0.02	g : 0.02	
G : 0.76	C : 0.14	A : 0.07	g : 0.02	

#score	597.5714285714294
#seq	42
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_CDS_m1_run1.nuc.txt

#NT
GGCGGCGCGG	chr3:9851542-9851799(+)$1	257	235	245	20.1851
ggcggcgggg	chr5:137801652-137801925(+)$1	273	11	21	17.1296
ggcggcgcgg	chr1:229693893-229694241(-)$1	348	239	249	20.1851
GGCGGCGCUG	chr11:637269-637557(+)$1	288	139	149	22.1296
ggcggcggcg	chr1:27022957-27023194(+)$1	237	50	60	17.4999
GGCAGAGCUG	chr8:145111054-145111317(-)$1	263	208	218	15.0925
UGCGGUGCUG	chr9:128003082-128003297(-)$1	215	73	83	14.5370
GGCGGCGCUG	chr1:896854-897115(+)$1	261	93	103	22.1296
ggcggcggug	chr17:30264286-30264565(+)$1	279	62	72	19.0740
GGGGGCGCGG	chr19:2270509-2270778(+)$1	269	89	99	15.8333
CGCGGCGCUG	chr5:138629672-138630031(+)$1	359	198	208	17.5925
GGAGGUGCUG	chr12:110719600-110719847(+)$1	247	23	33	14.8148
GGCGGAGCGG	chr7:107531629-107531933(+)$1	304	1	11	17.0370
ggcggggccg	chr6:31864797-31865082(-)$1	285	44	54	17.9629
ggcggcgcug	chr19:10406910-10407197(+)$1	287	271	281	22.1296
GGCGGCGCCG	chr8:145742850-145743128(-)$1	278	120	130	20.5555
ggcggcgccg	chr7:99755806-99756075(-)$1	269	235	245	20.5555
ggcggggcgg	chr3:196730153-196730421(+)$1	268	73	83	17.5925
GGCUGCGCAG	chr12:125270539-125270875(-)$1	336	130	140	15.8333
GGCGGCGGUC	chr7:5434069-5434370(-)$1	301	48	58	14.2592
ggcggcggcg	chr22:50354815-50355086(+)$1	271	216	226	17.4999
GGCGCCGCGG	chr9:74979417-74979671(-)$1	254	133	143	15.7407
GUCGGCGAUG	chr20:62373515-62373802(+)$1	287	29	39	13.6111
GGCUGUGCUG	chr9:37429559-37429840(+)$1	281	58	68	15.4629
GGCGgggccg	chr16:87426027-87426323(+)$1	296	75	85	17.9629
GGCUGGGCUG	chr3:52514258-52514537(+)$1	279	110	120	15.8333
GGCCGCCCUG	chr5:179248034-179248279(+)$1	245	54	64	14.5370
GGCGGCCCUG	chr6:34857033-34857319(+)$1	286	133	143	18.2407
ggcggcgggg	chr7:77166712-77166972(+)$1	260	107	117	17.1296
ggcggcggug	chr17:30264232-30264486(+)$1	254	116	126	19.0740
ggcggcggcg	chr16:2264514-2264779(-)$1	265	3	13	17.4999
ggcggggcug	chr11:116968845-116969119(-)$1	274	15	25	19.5370
GGCCGCGCUG	chr17:46985885-46986143(+)$1	258	207	217	18.4259
GGCGGCCCUG	chr3:142443377-142443636(+)$1	259	29	39	18.2407
GGCGGCUCCG	chr11:58346747-58347044(+)$1	297	75	85	16.6666
GCCGGGGCUG	chr17:80050578-80050848(-)$1	270	119	129	14.9999
GCUGGCGCUG	chr1:234744031-234744314(-)$1	283	0	10	13.1481
GGCUGUGCUG	chr1:11856350-11856608(-)$1	258	12	22	15.4629
ggcggcgggg	chr1:2160042-2160342(+)$1	300	42	52	17.1296
GGCGCCGCCG	chr10:6130988-6131356(+)$1	368	64	74	16.1111
GGCGGUGCCG	chr22:42229081-42229399(+)$1	318	86	96	17.5925
GGCGGCGCUG	chr7:150783825-150784078(+)$1	253	69	79	22.1296
GGCGGCUCUG	chr17:17206807-17207087(+)$1	280	85	95	18.2407
ggcggcucug	chr8:145687759-145688000(-)$1	241	85	95	18.2407
GGAGGAGCUG	chr1:155658076-155658332(-)$1	256	178	188	14.6296
GGCCGCGCAG	chr1:27022731-27023035(+)$1	304	165	175	15.8333
CGCGGGGCUG	chr11:69489740-69490059(-)$1	319	5	15	14.9999
GGCCGCGCUG	chr17:46985943-46986202(+)$1	259	149	159	18.4259
GGCGGCUCCG	chr8:52811346-52811688(-)$1	342	30	40	16.6666
ggcggggcug	chr15:80215333-80215694(-)$1	361	227	237	19.5370
GGGGGCCCUG	chr9:114937144-114937516(-)$1	372	8	18	13.8888
GGCAGGGCUG	chr16:28847427-28847738(+)$1	311	170	180	15.6481
ggcgccgccg	chr3:72495779-72496148(-)$1	369	109	119	16.1111

#otherMatches

#Struct PSSM
==========	chr4:53279-53548(+)$1	269	167	177	17.4999
bb]ffffff:	chr3:9851542-9851799(+)$1	257	235	245	20.1851
BBEEEEE{DD	chr5:137801652-137801925(+)$1	273	11	21	17.1296
ffffffeeee	chr1:229693893-229694241(-)$1	348	239	249	20.1851
ddd:======	chr11:637269-637557(+)$1	288	139	149	22.1296
"ggggggg[c	chr1:27022957-27023194(+)$1	237	50	60	17.4999
nnnnnccc]b	chr8:145111054-145111317(-)$1	263	208	218	15.0925
ffffff$$$$	chr9:128003082-128003297(-)$1	215	73	83	14.5370
CKKCCC{GGG	chr1:896854-897115(+)$1	261	93	103	22.1296
KKBB{HHHHH	chr17:30264286-30264565(+)$1	279	62	72	19.0740
GLLLFFFFFF	chr19:2270509-2270778(+)$1	269	89	99	15.8333
EEE}EEEEE:	chr5:138629672-138630031(+)$1	359	198	208	17.5925
::::::EEEE	chr12:110719600-110719847(+)$1	247	23	33	14.8148
:::GGGGGGG	chr7:107531629-107531933(+)$1	304	1	11	17.0370
=========s	chr6:31864797-31865082(-)$1	285	44	54	17.9629
==========	chr19:10406910-10407197(+)$1	287	271	281	22.1296
!ccc[a!!ee	chr8:145742850-145743128(-)$1	278	120	130	20.5555
HHHHHH:::c	chr7:99755806-99756075(-)$1	269	235	245	20.5555
ffbb]fffff	chr3:196730153-196730421(+)$1	268	73	83	17.5925
ffffffeeee	chr12:125270539-125270875(-)$1	336	130	140	15.8333
eeemmmmeee	chr7:5434069-5434370(-)$1	301	48	58	14.2592
EEE}A}EEEE	chr22:50354815-50355086(+)$1	271	216	226	17.4999
iiiiiiii[a	chr9:74979417-74979671(-)$1	254	133	143	15.7407
mmmmbb22cc	chr20:62373515-62373802(+)$1	287	29	39	13.6111
ddd[aa[bbp	chr9:37429559-37429840(+)$1	281	58	68	15.4629
:dddd[abb[	chr16:87426027-87426323(+)$1	296	75	85	17.9629
dddJJJJJJJ	chr3:52514258-52514537(+)$1	279	110	120	15.8333
iiiiiiaa]e	chr5:179248034-179248279(+)$1	245	54	64	14.5370
nbbbbdddd5	chr6:34857033-34857319(+)$1	286	133	143	18.2407
ccc[dddd!!	chr7:77166712-77166972(+)$1	260	107	117	17.1296
:bb[bbmmmm	chr17:30264232-30264486(+)$1	254	116	126	19.0740
:DDDDa[ccc	chr16:2264514-2264779(-)$1	265	3	13	17.4999
DDDDCCCDDD	chr11:116968845-116969119(-)$1	274	15	25	19.5370
D}DDDDGGGG	chr17:46985885-46986143(+)$1	258	207	217	18.4259
pggggggg:b	chr3:142443377-142443636(+)$1	259	29	39	18.2407
bb[ffffffl	chr11:58346747-58347044(+)$1	297	75	85	16.6666
ccca[bb!!f	chr17:80050578-80050848(-)$1	270	119	129	14.9999
eeeeeppppp	chr1:234744031-234744314(-)$1	283	0	10	13.1481
D{BBKKCCCC	chr1:11856350-11856608(-)$1	258	12	22	15.4629
cmmmmccc33	chr1:2160042-2160342(+)$1	300	42	52	17.1296
fffcccDDDD	chr10:6130988-6131356(+)$1	368	64	74	16.1111
B{BBKKCCC{	chr22:42229081-42229399(+)$1	318	86	96	17.5925
{CCCiiiiii	chr7:150783825-150784078(+)$1	253	69	79	22.1296
:bb[gggggg	chr17:17206807-17207087(+)$1	280	85	95	18.2407
ggg]iiiiii	chr8:145687759-145688000(-)$1	241	85	95	18.2407
4444a22bb]	chr1:155658076-155658332(-)$1	256	178	188	14.6296
eeeedddd[f	chr1:27022731-27023035(+)$1	304	165	175	15.8333
b[ddddssss	chr11:69489740-69490059(-)$1	319	5	15	14.9999
6ddddiiiii	chr17:46985943-46986202(+)$1	259	149	159	18.4259
dddccc[fff	chr8:52811346-52811688(-)$1	342	30	40	16.6666
ccc[ccc!!c	chr15:80215333-80215694(-)$1	361	227	237	19.5370
llleeeee22	chr9:114937144-114937516(-)$1	372	8	18	13.8888
ccc[dddd[d	chr16:28847427-28847738(+)$1	311	170	180	15.6481
e!!ccc!!cc	chr3:72495779-72496148(-)$1	369	109	119	16.1111

#DB
((((((((((	chr4:53279-53548(+)$1	1	167	177	17.4999
)).)))))).	chr3:9851542-9851799(+)$1	1	235	245	20.1851
(((((((.((	chr5:137801652-137801925(+)$1	1	11	21	17.1296
))))))))))	chr1:229693893-229694241(-)$1	1	239	249	20.1851
))).((((((	chr11:637269-637557(+)$1	1	139	149	22.1296
.(((((((.(	chr1:27022957-27023194(+)$1	1	50	60	17.4999
.....))).)	chr8:145111054-145111317(-)$1	1	208	218	15.0925
((((((....	chr9:128003082-128003297(-)$1	1	73	83	14.5370
(..(((.(((	chr1:896854-897115(+)$1	1	93	103	22.1296
..((.(((((	chr17:30264286-30264565(+)$1	1	62	72	19.0740
(...((((((	chr19:2270509-2270778(+)$1	1	89	99	15.8333
))).))))).	chr5:138629672-138630031(+)$1	1	198	208	17.5925
......((((	chr12:110719600-110719847(+)$1	1	23	33	14.8148
...(((((((	chr7:107531629-107531933(+)$1	1	1	11	17.0370
(((((((((.	chr6:31864797-31865082(-)$1	1	44	54	17.9629
))))))))))	chr19:10406910-10407197(+)$1	1	271	281	22.1296
.(((.(..((	chr8:145742850-145743128(-)$1	1	120	130	20.5555
))))))...(	chr7:99755806-99756075(-)$1	1	235	245	20.5555
)))).)))))	chr3:196730153-196730421(+)$1	1	73	83	17.5925
))))))((((	chr12:125270539-125270875(-)$1	1	130	140	15.8333
(((....)))	chr7:5434069-5434370(-)$1	1	48	58	14.2592
))).).))))	chr22:50354815-50355086(+)$1	1	216	226	17.4999
((((((((.(	chr9:74979417-74979671(-)$1	1	133	143	15.7407
....))..))	chr20:62373515-62373802(+)$1	1	29	39	13.6111
(((.((.((.	chr9:37429559-37429840(+)$1	1	58	68	15.4629
.((((.(((.	chr16:87426027-87426323(+)$1	1	75	85	17.9629
))))))))))	chr3:52514258-52514537(+)$1	1	110	120	15.8333
)))))))).)	chr5:179248034-179248279(+)$1	1	54	64	14.5370
.)))))))).	chr6:34857033-34857319(+)$1	1	133	143	18.2407
(((.((((..	chr7:77166712-77166972(+)$1	1	107	117	17.1296
.((.((....	chr17:30264232-30264486(+)$1	1	116	126	19.0740
.(((((.(((	chr16:2264514-2264779(-)$1	1	3	13	17.4999
((((((((((	chr11:116968845-116969119(-)$1	1	15	25	19.5370
).))))))))	chr17:46985885-46986143(+)$1	1	207	217	18.4259
.))))))).(	chr3:142443377-142443636(+)$1	1	29	39	18.2407
((.((((((.	chr11:58346747-58347044(+)$1	1	75	85	16.6666
((((.((..(	chr17:80050578-80050848(-)$1	1	119	129	14.9999
(((((.....	chr1:234744031-234744314(-)$1	1	0	10	13.1481
(.((..((((	chr1:11856350-11856608(-)$1	1	12	22	15.4629
(....)))..	chr1:2160042-2160342(+)$1	1	42	52	17.1296
))))))((((	chr10:6130988-6131356(+)$1	1	64	74	16.1111
(.((..(((.	chr22:42229081-42229399(+)$1	1	86	96	17.5925
.(((((((((	chr7:150783825-150784078(+)$1	1	69	79	22.1296
.((.((((((	chr17:17206807-17207087(+)$1	1	85	95	18.2407
))).))))))	chr8:145687759-145688000(-)$1	1	85	95	18.2407
....)..)).	chr1:155658076-155658332(-)$1	1	178	188	14.6296
))))((((.(	chr1:27022731-27023035(+)$1	1	165	175	15.8333
(.((((....	chr11:69489740-69490059(-)$1	1	5	15	14.9999
.)))))))))	chr17:46985943-46986202(+)$1	1	149	159	18.4259
((((((.(((	chr8:52811346-52811688(-)$1	1	30	40	16.6666
(((.(((..(	chr15:80215333-80215694(-)$1	1	227	237	19.5370
...)))))..	chr9:114937144-114937516(-)$1	1	8	18	13.8888
(((.((((.(	chr16:28847427-28847738(+)$1	1	170	180	15.6481
(..(((..((	chr3:72495779-72496148(-)$1	1	109	119	16.1111

#PSSM
G : 0.62	g : 0.31	C : 0.03	U : 0.01	
G : 0.62	g : 0.31	C : 0.03	U : 0.01	
C : 0.59	c : 0.31	G : 0.03	A : 0.03	U : 0.01	
G : 0.49	g : 0.31	U : 0.07	C : 0.07	A : 0.03	
G : 0.62	g : 0.31	C : 0.03	c : 0.01	
C : 0.44	c : 0.24	U : 0.09	g : 0.09	G : 0.07	A : 0.05	
G : 0.53	g : 0.31	C : 0.07	U : 0.05	u : 0.01	
C : 0.61	c : 0.18	g : 0.14	G : 0.03	A : 0.01	
U : 0.44	c : 0.12	C : 0.11	u : 0.11	g : 0.09	G : 0.07	A : 0.03	
G : 0.64	g : 0.33	C : 0.01	

#score	933.8888888888881
#seq	54
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_CDS_m1_run2.nuc.txt

#NT
GAAG	chr1:78429248-78429501(-)$1	253	138	142	12.0000
GAAG	chr2:54856458-54856747(+)$1	289	20	24	12.0000
GAAG	chr2:232577123-232577326(+)$1	203	34	38	12.0000
GAAG	chr14:23792548-23792781(+)$1	233	58	62	12.0000
GAAG	chr15:59191559-59191845(-)$1	286	40	44	12.0000
GAAG	chr21:34143752-34144058(-)$1	306	44	48	12.0000
GAAG	chr2:188348812-188349044(-)$1	232	7	11	12.0000
GAAG	chr11:65830998-65831210(+)$1	212	21	25	12.0000
GAAG	chr2:21257668-21257873(-)$1	205	146	150	12.0000
GAAG	chr7:152006979-152007258(-)$1	279	19	23	12.0000
GAAG	chr12:80083854-80084124(-)$1	270	26	30	12.0000
gaag	chr6:167365922-167366137(-)$1	215	21	25	12.0000
GAAG	chr22:36680350-36680593(-)$1	243	75	79	12.0000
GAAG	chrX:102931387-102931679(-)$1	292	0	4	12.0000
GAAG	chr1:160209665-160210032(-)$1	367	42	46	12.0000
GAAG	chr17:8395584-8395827(-)$1	243	9	13	12.0000
GAAG	chr6:119509579-119509806(-)$1	227	81	85	12.0000
GAAG	chr19:19135637-19135935(-)$1	298	14	18	12.0000
GAAG	chr5:95231235-95231494(-)$1	259	253	257	12.0000
GAAG	chr11:16776364-16776693(+)$1	329	56	60	12.0000
GAAG	chr16:9015022-9015251(-)$1	229	129	133	12.0000
GAAG	chr20:47739635-47739872(-)$1	237	177	181	12.0000
GAAG	chr15:69072644-69072899(-)$1	255	93	97	12.0000
GAAG	chr11:129979373-129979597(+)$1	224	15	19	12.0000
GAAG	chr6:7581557-7581807(+)$1	250	26	30	12.0000
GAAG	chr1:24998605-24998861(+)$1	256	79	83	12.0000
GAAG	chr2:54885042-54885281(+)$1	239	56	60	12.0000
GAAG	chr2:232577412-232577649(+)$1	237	121	125	12.0000
GAAG	chr14:31619181-31619434(-)$1	253	7	11	12.0000
GAAG	chr12:26709192-26709400(-)$1	208	195	199	12.0000
GAAG	chr8:17817789-17818054(+)$1	265	92	96	12.0000
GAAG	chr6:11185704-11186001(-)$1	297	156	160	12.0000
GAAG	chr20:61528148-61528449(-)$1	301	105	109	12.0000
GAAG	chr1:146757889-146758150(+)$1	261	167	171	12.0000
GAAG	chr2:61575360-61575613(-)$1	253	11	15	12.0000
GAAG	chr7:72912826-72913093(-)$1	267	70	74	12.0000
GAAG	chr20:52831744-52832077(+)$1	333	112	116	12.0000
GAAG	chr6:7579829-7580082(+)$1	253	91	95	12.0000
GAAG	chr1:19439067-19439395(-)$1	328	85	89	12.0000
GAAG	chr20:34309663-34309900(-)$1	237	39	43	12.0000
GAAG	chr3:148895602-148895849(-)$1	247	92	96	12.0000
GAAG	chr6:119611747-119612018(-)$1	271	111	115	12.0000
GAAG	chr2:232325123-232325338(-)$1	215	74	78	12.0000
GAAG	chrX:30737480-30737745(+)$1	265	69	73	12.0000
GAAG	chr9:131356526-131356752(+)$1	226	6	10	12.0000
GAAG	chr17:57812647-57812936(+)$1	289	73	77	12.0000
GAAG	chr17:78261918-78262213(+)$1	295	34	38	12.0000
GAAG	chr6:144843177-144843407(+)$1	230	97	101	12.0000
GAAG	chr10:70101632-70101932(+)$1	300	280	284	12.0000
GAAG	chr5:43298660-43298921(-)$1	261	40	44	12.0000
GAAG	chr2:153484875-153485141(+)$1	266	4	8	12.0000
GAAG	chr10:101590494-101590707(+)$1	213	2	6	12.0000
GAAG	chr6:7567971-7568192(+)$1	221	48	52	12.0000
GAAG	chr2:21257620-21257835(-)$1	215	108	112	12.0000
GAAG	chr17:38318252-38318510(+)$1	258	65	69	12.0000
GAAG	chr3:167750205-167750456(-)$1	251	8	12	12.0000
GAAG	chr3:167754563-167754851(-)$1	288	203	207	12.0000
GAAG	chr2:216296584-216296787(-)$1	203	111	115	12.0000
GAAG	chr1:62329991-62330273(+)$1	282	74	78	12.0000
GAAG	chr2:188349545-188349814(-)$1	269	123	127	12.0000
GAAG	chr10:7786034-7786279(+)$1	245	44	48	12.0000
GAAG	chr6:7580930-7581210(+)$1	280	76	80	12.0000
GAAG	chr16:70294847-70295065(-)$1	218	22	26	12.0000
GAAG	chr17:48462378-48462696(-)$1	318	14	18	12.0000
GAAG	chr17:62499222-62499477(-)$1	255	38	42	12.0000
gaag	chr14:73577518-73577862(+)$1	344	77	81	12.0000
GAAG	chr9:128000320-128000543(-)$1	223	59	63	12.0000
GAAG	chr6:144745048-144745313(+)$1	265	19	23	12.0000
GAAG	chr9:123769101-123769353(-)$1	252	10	14	12.0000
GAAG	chr2:55776871-55777215(-)$1	344	74	78	12.0000
GAAG	chr5:179149896-179150120(+)$1	224	56	60	12.0000
GAAG	chr17:48818398-48818708(+)$1	310	22	26	12.0000
GAAG	chr19:57328686-57328968(-)$1	282	38	42	12.0000
GAAG	chr8:17829830-17830078(+)$1	248	23	27	12.0000
GAAG	chr14:23945343-23945620(+)$1	277	112	116	12.0000
GAAG	chr2:61413714-61414006(+)$1	292	98	102	12.0000
GAAG	chr1:93301648-93301862(+)$1	214	131	135	12.0000
GAAG	chr12:76442878-76443131(-)$1	253	101	105	12.0000
GAAG	chr18:47014809-47015038(-)$1	229	40	44	12.0000
GAAg	chr17:65821826-65822086(+)$1	260	238	242	12.0000
GAAG	chr9:131379836-131380121(+)$1	285	85	89	12.0000
GAAG	chr14:34993804-34994052(-)$1	248	159	163	12.0000
GAAG	chr2:201283879-201284217(+)$1	338	109	113	12.0000
GAAG	chr20:57569102-57569351(+)$1	249	32	36	12.0000
GAAG	chr1:8525894-8526132(-)$1	238	96	100	12.0000
GAAG	chr6:7577152-7577375(+)$1	223	81	85	12.0000
GAAG	chr20:43623628-43623999(+)$1	371	156	160	12.0000
GAAG	chr11:118888093-118888312(-)$1	219	56	60	12.0000
GAAG	chr7:72891432-72891693(-)$1	261	134	138	12.0000
GAAG	chr10:19571941-19572191(+)$1	250	11	15	12.0000
GAAG	chr20:35833151-35833372(+)$1	221	66	70	12.0000

#otherMatches

#Struct PSSM
dddd	chr8:56986162-56986427(-)$1	265	34	38	12.0000
c:::	chr1:78429248-78429501(-)$1	253	138	142	12.0000
mmmc	chr2:54856458-54856747(+)$1	289	20	24	12.0000
b]gg	chr2:232577123-232577326(+)$1	203	34	38	12.0000
ccce	chr14:23792548-23792781(+)$1	233	58	62	12.0000
:::D	chr15:59191559-59191845(-)$1	286	40	44	12.0000
JJJJ	chr21:34143752-34144058(-)$1	306	44	48	12.0000
eeee	chr2:188348812-188349044(-)$1	232	7	11	12.0000
g:::	chr11:65830998-65831210(+)$1	212	21	25	12.0000
::::	chr2:21257668-21257873(-)$1	205	146	150	12.0000
CNNN	chr7:152006979-152007258(-)$1	279	19	23	12.0000
dd]a	chr12:80083854-80084124(-)$1	270	26	30	12.0000
ffff	chr6:167365922-167366137(-)$1	215	21	25	12.0000
bb33	chr22:36680350-36680593(-)$1	243	75	79	12.0000
:DDD	chrX:102931387-102931679(-)$1	292	0	4	12.0000
NNEE	chr1:160209665-160210032(-)$1	367	42	46	12.0000
ff[b	chr17:8395584-8395827(-)$1	243	9	13	12.0000
ccc:	chr6:119509579-119509806(-)$1	227	81	85	12.0000
ee##	chr19:19135637-19135935(-)$1	298	14	18	12.0000
d22c	chr5:95231235-95231494(-)$1	259	253	257	12.0000
MMMF	chr11:16776364-16776693(+)$1	329	56	60	12.0000
::::	chr16:9015022-9015251(-)$1	229	129	133	12.0000
FF:b	chr20:47739635-47739872(-)$1	237	177	181	12.0000
dddd	chr15:69072644-69072899(-)$1	255	93	97	12.0000
wwww	chr11:129979373-129979597(+)$1	224	15	19	12.0000
e:::	chr6:7581557-7581807(+)$1	250	26	30	12.0000
eeee	chr1:24998605-24998861(+)$1	256	79	83	12.0000
b!!c	chr2:54885042-54885281(+)$1	239	56	60	12.0000
3fff	chr2:232577412-232577649(+)$1	237	121	125	12.0000
mmee	chr14:31619181-31619434(-)$1	253	7	11	12.0000
FFFA	chr12:26709192-26709400(-)$1	208	195	199	12.0000
HHHH	chr8:17817789-17818054(+)$1	265	92	96	12.0000
C{II	chr6:11185704-11186001(-)$1	297	156	160	12.0000
ffff	chr20:61528148-61528449(-)$1	301	105	109	12.0000
FFF:	chr1:146757889-146758150(+)$1	261	167	171	12.0000
DDDD	chr2:61575360-61575613(-)$1	253	11	15	12.0000
333i	chr7:72912826-72913093(-)$1	267	70	74	12.0000
%%%%	chr20:52831744-52832077(+)$1	333	112	116	12.0000
::::	chr6:7579829-7580082(+)$1	253	91	95	12.0000
eeeG	chr1:19439067-19439395(-)$1	328	85	89	12.0000
]eee	chr20:34309663-34309900(-)$1	237	39	43	12.0000
ffff	chr3:148895602-148895849(-)$1	247	92	96	12.0000
ffff	chr6:119611747-119612018(-)$1	271	111	115	12.0000
::::	chr2:232325123-232325338(-)$1	215	74	78	12.0000
gggg	chrX:30737480-30737745(+)$1	265	69	73	12.0000
"""b	chr9:131356526-131356752(+)$1	226	6	10	12.0000
xxxh	chr17:57812647-57812936(+)$1	289	73	77	12.0000
:::D	chr17:78261918-78262213(+)$1	295	34	38	12.0000
eeee	chr6:144843177-144843407(+)$1	230	97	101	12.0000
FF:d	chr10:70101632-70101932(+)$1	300	280	284	12.0000
eeee	chr5:43298660-43298921(-)$1	261	40	44	12.0000
eeee	chr2:153484875-153485141(+)$1	266	4	8	12.0000
CDDD	chr10:101590494-101590707(+)$1	213	2	6	12.0000
eeee	chr6:7567971-7568192(+)$1	221	48	52	12.0000
&&&&	chr2:21257620-21257835(-)$1	215	108	112	12.0000
mmmm	chr17:38318252-38318510(+)$1	258	65	69	12.0000
::JJ	chr3:167750205-167750456(-)$1	251	8	12	12.0000
rrrr	chr3:167754563-167754851(-)$1	288	203	207	12.0000
qqqb	chr2:216296584-216296787(-)$1	203	111	115	12.0000
g!!b	chr1:62329991-62330273(+)$1	282	74	78	12.0000
iiif	chr2:188349545-188349814(-)$1	269	123	127	12.0000
ooob	chr10:7786034-7786279(+)$1	245	44	48	12.0000
!!dd	chr6:7580930-7581210(+)$1	280	76	80	12.0000
GG{B	chr16:70294847-70295065(-)$1	218	22	26	12.0000
FFF{	chr17:48462378-48462696(-)$1	318	14	18	12.0000
FFFF	chr17:62499222-62499477(-)$1	255	38	42	12.0000
::::	chr14:73577518-73577862(+)$1	344	77	81	12.0000
:::h	chr9:128000320-128000543(-)$1	223	59	63	12.0000
D::e	chr6:144745048-144745313(+)$1	265	19	23	12.0000
GGGd	chr9:123769101-123769353(-)$1	252	10	14	12.0000
dddd	chr2:55776871-55777215(-)$1	344	74	78	12.0000
eepp	chr5:179149896-179150120(+)$1	224	56	60	12.0000
FFFF	chr17:48818398-48818708(+)$1	310	22	26	12.0000
FFFB	chr19:57328686-57328968(-)$1	282	38	42	12.0000
pppp	chr8:17829830-17830078(+)$1	248	23	27	12.0000
dddd	chr14:23945343-23945620(+)$1	277	112	116	12.0000
::cc	chr2:61413714-61414006(+)$1	292	98	102	12.0000
f]ee	chr1:93301648-93301862(+)$1	214	131	135	12.0000
333h	chr12:76442878-76443131(-)$1	253	101	105	12.0000
FFFL	chr18:47014809-47015038(-)$1	229	40	44	12.0000
b22f	chr17:65821826-65822086(+)$1	260	238	242	12.0000
ff::	chr9:131379836-131380121(+)$1	285	85	89	12.0000
HHHH	chr14:34993804-34994052(-)$1	248	159	163	12.0000
====	chr2:201283879-201284217(+)$1	338	109	113	12.0000
f:::	chr20:57569102-57569351(+)$1	249	32	36	12.0000
d$$$	chr1:8525894-8526132(-)$1	238	96	100	12.0000
GGGG	chr6:7577152-7577375(+)$1	223	81	85	12.0000
EEEE	chr20:43623628-43623999(+)$1	371	156	160	12.0000
mmmm	chr11:118888093-118888312(-)$1	219	56	60	12.0000
33dd	chr7:72891432-72891693(-)$1	261	134	138	12.0000
dd:e	chr10:19571941-19572191(+)$1	250	11	15	12.0000
oooo	chr20:35833151-35833372(+)$1	221	66	70	12.0000

#DB
))))	chr8:56986162-56986427(-)$1	1	34	38	12.0000
)...	chr1:78429248-78429501(-)$1	1	138	142	12.0000
...)	chr2:54856458-54856747(+)$1	1	20	24	12.0000
).))	chr2:232577123-232577326(+)$1	1	34	38	12.0000
((((	chr14:23792548-23792781(+)$1	1	58	62	12.0000
...(	chr15:59191559-59191845(-)$1	1	40	44	12.0000
((((	chr21:34143752-34144058(-)$1	1	44	48	12.0000
((((	chr2:188348812-188349044(-)$1	1	7	11	12.0000
)...	chr11:65830998-65831210(+)$1	1	21	25	12.0000
....	chr2:21257668-21257873(-)$1	1	146	150	12.0000
(...	chr7:152006979-152007258(-)$1	1	19	23	12.0000
)).)	chr12:80083854-80084124(-)$1	1	26	30	12.0000
((((	chr6:167365922-167366137(-)$1	1	21	25	12.0000
))..	chr22:36680350-36680593(-)$1	1	75	79	12.0000
.(((	chrX:102931387-102931679(-)$1	1	0	4	12.0000
..((	chr1:160209665-160210032(-)$1	1	42	46	12.0000
((.(	chr17:8395584-8395827(-)$1	1	9	13	12.0000
))).	chr6:119509579-119509806(-)$1	1	81	85	12.0000
((..	chr19:19135637-19135935(-)$1	1	14	18	12.0000
)..)	chr5:95231235-95231494(-)$1	1	253	257	12.0000
...(	chr11:16776364-16776693(+)$1	1	56	60	12.0000
....	chr16:9015022-9015251(-)$1	1	129	133	12.0000
)).(	chr20:47739635-47739872(-)$1	1	177	181	12.0000
))))	chr15:69072644-69072899(-)$1	1	93	97	12.0000
....	chr11:129979373-129979597(+)$1	1	15	19	12.0000
)...	chr6:7581557-7581807(+)$1	1	26	30	12.0000
))))	chr1:24998605-24998861(+)$1	1	79	83	12.0000
(..(	chr2:54885042-54885281(+)$1	1	56	60	12.0000
.)))	chr2:232577412-232577649(+)$1	1	121	125	12.0000
..))	chr14:31619181-31619434(-)$1	1	7	11	12.0000
))))	chr12:26709192-26709400(-)$1	1	195	199	12.0000
((((	chr8:17817789-17818054(+)$1	1	92	96	12.0000
(.((	chr6:11185704-11186001(-)$1	1	156	160	12.0000
))))	chr20:61528148-61528449(-)$1	1	105	109	12.0000
))).	chr1:146757889-146758150(+)$1	1	167	171	12.0000
((((	chr2:61575360-61575613(-)$1	1	11	15	12.0000
...)	chr7:72912826-72913093(-)$1	1	70	74	12.0000
....	chr20:52831744-52832077(+)$1	1	112	116	12.0000
....	chr6:7579829-7580082(+)$1	1	91	95	12.0000
)))(	chr1:19439067-19439395(-)$1	1	85	89	12.0000
.)))	chr20:34309663-34309900(-)$1	1	39	43	12.0000
))))	chr3:148895602-148895849(-)$1	1	92	96	12.0000
((((	chr6:119611747-119612018(-)$1	1	111	115	12.0000
....	chr2:232325123-232325338(-)$1	1	74	78	12.0000
((((	chrX:30737480-30737745(+)$1	1	69	73	12.0000
...(	chr9:131356526-131356752(+)$1	1	6	10	12.0000
...)	chr17:57812647-57812936(+)$1	1	73	77	12.0000
...(	chr17:78261918-78262213(+)$1	1	34	38	12.0000
((((	chr6:144843177-144843407(+)$1	1	97	101	12.0000
)).(	chr10:70101632-70101932(+)$1	1	280	284	12.0000
((((	chr5:43298660-43298921(-)$1	1	40	44	12.0000
((((	chr2:153484875-153485141(+)$1	1	4	8	12.0000
((((	chr10:101590494-101590707(+)$1	1	2	6	12.0000
))))	chr6:7567971-7568192(+)$1	1	48	52	12.0000
....	chr2:21257620-21257835(-)$1	1	108	112	12.0000
....	chr17:38318252-38318510(+)$1	1	65	69	12.0000
..((	chr3:167750205-167750456(-)$1	1	8	12	12.0000
....	chr3:167754563-167754851(-)$1	1	203	207	12.0000
...)	chr2:216296584-216296787(-)$1	1	111	115	12.0000
(..(	chr1:62329991-62330273(+)$1	1	74	78	12.0000
)))(	chr2:188349545-188349814(-)$1	1	123	127	12.0000
...)	chr10:7786034-7786279(+)$1	1	44	48	12.0000
..((	chr6:7580930-7581210(+)$1	1	76	80	12.0000
((.(	chr16:70294847-70295065(-)$1	1	22	26	12.0000
(((.	chr17:48462378-48462696(-)$1	1	14	18	12.0000
((((	chr17:62499222-62499477(-)$1	1	38	42	12.0000
....	chr14:73577518-73577862(+)$1	1	77	81	12.0000
...(	chr9:128000320-128000543(-)$1	1	59	63	12.0000
(..(	chr6:144745048-144745313(+)$1	1	19	23	12.0000
((((	chr9:123769101-123769353(-)$1	1	10	14	12.0000
))))	chr2:55776871-55777215(-)$1	1	74	78	12.0000
((..	chr5:179149896-179150120(+)$1	1	56	60	12.0000
((((	chr17:48818398-48818708(+)$1	1	22	26	12.0000
((((	chr19:57328686-57328968(-)$1	1	38	42	12.0000
....	chr8:17829830-17830078(+)$1	1	23	27	12.0000
))))	chr14:23945343-23945620(+)$1	1	112	116	12.0000
..((	chr2:61413714-61414006(+)$1	1	98	102	12.0000
).))	chr1:93301648-93301862(+)$1	1	131	135	12.0000
...)	chr12:76442878-76443131(-)$1	1	101	105	12.0000
(((.	chr18:47014809-47015038(-)$1	1	40	44	12.0000
)..)	chr17:65821826-65822086(+)$1	1	238	242	12.0000
))..	chr9:131379836-131380121(+)$1	1	85	89	12.0000
))))	chr14:34993804-34994052(-)$1	1	159	163	12.0000
))))	chr2:201283879-201284217(+)$1	1	109	113	12.0000
)...	chr20:57569102-57569351(+)$1	1	32	36	12.0000
(...	chr1:8525894-8526132(-)$1	1	96	100	12.0000
((((	chr6:7577152-7577375(+)$1	1	81	85	12.0000
))))	chr20:43623628-43623999(+)$1	1	156	160	12.0000
....	chr11:118888093-118888312(-)$1	1	56	60	12.0000
..))	chr7:72891432-72891693(-)$1	1	134	138	12.0000
)).(	chr10:19571941-19572191(+)$1	1	11	15	12.0000
....	chr20:35833151-35833372(+)$1	1	66	70	12.0000

#PSSM
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	
A : 0.97	a : 0.02	
G : 0.96	g : 0.03	

#score	1104.0000000000007
#seq	92
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_transcript_m2_run2.nuc.txt

#NT
GGGUGGG	chr1:249151745-249152050(-)$1	305	126	133	17.3114
gggcggg	chr7:1109983-1110238(-)$1	255	227	234	13.2131
GGCUGGG	chrX:135961291-135961503(-)$1	212	46	53	12.9672
AGGUGGG	chr3:13419028-13419301(-)$1	273	4	11	13.6229
gggugcg	chr6:16266481-16266728(+)$1	247	82	89	13.4590
gggugug	chr21:38739331-38739622(+)$1	291	99	106	13.7868
GAGUGGG	chr2:64880549-64880827(-)$1	278	21	28	13.1311
GAGUGGG	chr5:180668714-180668974(-)$1	260	17	24	13.1311
GGGUGGG	chr9:139621136-139621359(-)$1	223	210	217	17.3114
GCGUGGG	chr3:128216211-128216455(+)$1	244	111	118	12.8852
GGGAGGG	chr2:21266636-21266901(-)$1	265	202	209	13.3770
gggugag	chr11:497356-497595(-)$1	239	189	196	13.6229
GGGUGGG	chr11:93454887-93455092(+)$1	205	29	36	17.3114
GGGUGGG	chr16:1425349-1425609(-)$1	260	229	236	17.3114
GGGUGUG	chr12:133112778-133113019(+)$1	241	108	115	13.7868
GGGUGGG	chr14:105630286-105630526(-)$1	240	32	39	17.3114
GGGUGGG	chr14:105630572-105630814(-)$1	242	92	99	17.3114
GGGAGGG	chr1:109642801-109643009(+)$1	208	19	26	13.3770
ggguugg	chr5:6848386-6848634(-)$1	248	108	115	12.8032
GGGUGGG	chr22:20067945-20068242(+)$1	297	130	137	17.3114
AGGUGGG	chr16:30107137-30107408(-)$1	271	232	239	13.6229
GGGUAGG	chr15:93426497-93426753(+)$1	256	117	124	12.8032
GGGUGAG	chr1:109642853-109643057(+)$1	204	36	43	13.6229
GGGUGUG	chr20:2637503-2637711(+)$1	208	55	62	13.7868
ggcuggg	chr17:42401880-42402159(-)$1	279	100	107	12.9672
GGGCGGG	chr2:97533797-97534042(-)$1	245	64	71	13.2131
ggguggg	chr2:97559964-97560223(-)$1	259	69	76	17.3114
UGGUGGG	chr19:34875160-34875431(+)$1	271	191	198	13.4590
GGGUAGG	chr7:6677245-6677502(+)$1	257	6	13	12.8032
GGCUGGG	chr22:39711180-39711410(-)$1	230	208	215	12.9672
GGCUGGG	chr11:62620309-62620524(-)$1	215	93	100	12.9672
GGGUGAG	chr11:811625-811832(+)$1	207	18	25	13.6229
GGGUGGG	chr19:2271135-2271390(+)$1	255	113	120	17.3114
GGGUGUG	chr2:234184489-234184732(+)$1	243	118	125	13.7868
GGGAGGG	chr16:85627585-85627867(+)$1	282	111	118	13.3770
UGGUGGG	chr18:47017972-47018186(-)$1	214	69	76	13.4590
GGGUGCG	chr19:7705284-7705608(+)$1	324	181	188	13.4590
GGGUGGG	chr22:49980998-49981255(-)$1	257	95	102	17.3114
gggcggg	chr3:13461567-13461855(-)$1	288	56	63	13.2131
GGGUGGG	chr20:62330505-62330761(-)$1	256	97	104	17.3114
CGGUGGG	chr12:125398883-125399120(-)$1	237	40	47	13.4590
GGGUGGG	chr19:575249-575520(+)$1	271	130	137	17.3114
GGGAGGG	chr7:66127597-66127851(+)$1	254	25	32	13.3770
GGGAGGG	chr1:109642795-109643001(+)$1	206	25	32	13.3770
AGGUGGG	chr16:160338-160598(-)$1	260	83	90	13.6229
GGGUGUG	chr17:80107466-80107717(-)$1	251	3	10	13.7868
agguggg	chr16:81995421-81995670(+)$1	249	185	192	13.6229
GGGUGAG	chr9:136217231-136217467(+)$1	236	36	43	13.6229
GGGUGGG	chr11:1997963-1998266(+)$1	303	150	157	17.3114
GGGUGGG	chr20:2637222-2637426(+)$1	204	20	27	17.3114
CGGUGGG	chr11:819914-820161(+)$1	247	86	93	13.4590
GAGUGGG	chr16:2215639-2215919(+)$1	280	168	175	13.1311
GGGUGGG	chr3:169482657-169482900(-)$1	243	62	69	17.3114
GUGUGGG	chr3:13418961-13419228(-)$1	267	6	13	12.8852
GAGUGGG	chr3:13419441-13419671(-)$1	230	99	106	13.1311
ugguggg	chr22:49974065-49974397(-)$1	332	31	38	13.4590
CGGUGGG	chr16:88840184-88840474(-)$1	290	202	209	13.4590
agguggg	chr11:123172085-123172307(+)$1	222	17	24	13.6229
GGGUUGG	chr19:49993154-49993363(+)$1	209	168	175	12.8032
gggugug	chr12:133356648-133356874(-)$1	226	65	72	13.7868

#otherMatches

#Struct PSSM
cccmmmm	chr17:62223385-62223613(+)$1	228	2	9	17.3114
fff]fff	chr1:249151745-249152050(-)$1	305	126	133	17.3114
]cccfff	chr7:1109983-1110238(-)$1	255	227	234	13.2131
pgggggg	chrX:135961291-135961503(-)$1	212	46	53	12.9672
BLLLFFF	chr3:13419028-13419301(-)$1	273	4	11	13.6229
eeee::i	chr6:16266481-16266728(+)$1	247	82	89	13.4590
ss=====	chr21:38739331-38739622(+)$1	291	99	106	13.7868
eee[ccc	chr2:64880549-64880827(-)$1	278	21	28	13.1311
bb[bbnn	chr5:180668714-180668974(-)$1	260	17	24	13.1311
eeeee::	chr9:139621136-139621359(-)$1	223	210	217	17.3114
ee[dddd	chr3:128216211-128216455(+)$1	244	111	118	12.8852
DDYYCCC	chr2:21266636-21266901(-)$1	265	202	209	13.3770
0000000	chr11:497356-497595(-)$1	239	189	196	13.6229
bb]bbBB	chr11:93454887-93455092(+)$1	205	29	36	17.3114
||JJJJJ	chr16:1425349-1425609(-)$1	260	229	236	17.3114
gggg666	chr12:133112778-133113019(+)$1	241	108	115	13.7868
:::::dd	chr14:105630286-105630526(-)$1	240	32	39	17.3114
IKKGGGG	chr14:105630572-105630814(-)$1	242	92	99	17.3114
ffffff[	chr1:109642801-109643009(+)$1	208	19	26	13.3770
ff[eeee	chr5:6848386-6848634(-)$1	248	108	115	12.8032
ddbbbb[	chr22:20067945-20068242(+)$1	297	130	137	17.3114
:HHHHHH	chr16:30107137-30107408(-)$1	271	232	239	13.6229
888888g	chr15:93426497-93426753(+)$1	256	117	124	12.8032
HHH:::d	chr1:109642853-109643057(+)$1	204	36	43	13.6229
ee[dddd	chr20:2637503-2637711(+)$1	208	55	62	13.7868
]ccc]a:	chr17:42401880-42402159(-)$1	279	100	107	12.9672
fffffff	chr2:97533797-97534042(-)$1	245	64	71	13.2131
[a[ammm	chr2:97559964-97560223(-)$1	259	69	76	17.3114
dddd!!e	chr19:34875160-34875431(+)$1	271	191	198	13.4590
D{BB{BB	chr7:6677245-6677502(+)$1	257	6	13	12.8032
GGGGGGG	chr22:39711180-39711410(-)$1	230	208	215	12.9672
==333ff	chr11:62620309-62620524(-)$1	215	93	100	12.9672
fffff[a	chr11:811625-811832(+)$1	207	18	25	13.6229
HHHHHH=	chr19:2271135-2271390(+)$1	255	113	120	17.3114
44fffff	chr2:234184489-234184732(+)$1	243	118	125	13.7868
a]ggggg	chr16:85627585-85627867(+)$1	282	111	118	13.3770
eeeeee!	chr18:47017972-47018186(-)$1	214	69	76	13.4590
=======	chr19:7705284-7705608(+)$1	324	181	188	13.4590
hhhhhhh	chr22:49980998-49981255(-)$1	257	95	102	17.3114
ggggggg	chr3:13461567-13461855(-)$1	288	56	63	13.2131
::FFFFF	chr20:62330505-62330761(-)$1	256	97	104	17.3114
iiiiiic	chr12:125398883-125399120(-)$1	237	40	47	13.4590
ooooooc	chr19:575249-575520(+)$1	271	130	137	17.3114
bb[dddd	chr7:66127597-66127851(+)$1	254	25	32	13.3770
GGGGGGG	chr1:109642795-109643001(+)$1	206	25	32	13.3770
iiiiiii	chr16:160338-160598(-)$1	260	83	90	13.6229
=======	chr17:80107466-80107717(-)$1	251	3	10	13.7868
ggggggg	chr16:81995421-81995670(+)$1	249	185	192	13.6229
BB{GGGG	chr9:136217231-136217467(+)$1	236	36	43	13.6229
iiiiiii	chr11:1997963-1998266(+)$1	303	150	157	17.3114
GGGGGG{	chr20:2637222-2637426(+)$1	204	20	27	17.3114
dddeeee	chr11:819914-820161(+)$1	247	86	93	13.4590
hh]ffff	chr16:2215639-2215919(+)$1	280	168	175	13.1311
dddd]cc	chr3:169482657-169482900(-)$1	243	62	69	17.3114
FFFNNNN	chr3:13418961-13419228(-)$1	267	6	13	12.8852
+++++++	chr3:13419441-13419671(-)$1	230	99	106	13.1311
ee!!a[a	chr22:49974065-49974397(-)$1	332	31	38	13.4590
HHHHLLL	chr16:88840184-88840474(-)$1	290	202	209	13.4590
d:FFFFF	chr11:123172085-123172307(+)$1	222	17	24	13.6229
mmmmfff	chr19:49993154-49993363(+)$1	209	168	175	12.8032
ffffffi	chr12:133356648-133356874(-)$1	226	65	72	13.7868

#DB
(((....	chr17:62223385-62223613(+)$1	1	2	9	17.3114
))).)))	chr1:249151745-249152050(-)$1	1	126	133	17.3114
.)))(((	chr7:1109983-1110238(-)$1	1	227	234	13.2131
.))))))	chrX:135961291-135961503(-)$1	1	46	53	12.9672
(...(((	chr3:13419028-13419301(-)$1	1	4	11	13.6229
))))..(	chr6:16266481-16266728(+)$1	1	82	89	13.4590
..)))))	chr21:38739331-38739622(+)$1	1	99	106	13.7868
(((.(((	chr2:64880549-64880827(-)$1	1	21	28	13.1311
((.((..	chr5:180668714-180668974(-)$1	1	17	24	13.1311
)))))..	chr9:139621136-139621359(-)$1	1	210	217	17.3114
((.((((	chr3:128216211-128216455(+)$1	1	111	118	12.8852
))..)))	chr2:21266636-21266901(-)$1	1	202	209	13.3770
.......	chr11:497356-497595(-)$1	1	189	196	13.6229
)).))((	chr11:93454887-93455092(+)$1	1	29	36	17.3114
..)))))	chr16:1425349-1425609(-)$1	1	229	236	17.3114
))))...	chr12:133112778-133113019(+)$1	1	108	115	13.7868
.....((	chr14:105630286-105630526(-)$1	1	32	39	17.3114
(..((((	chr14:105630572-105630814(-)$1	1	92	99	17.3114
((((((.	chr1:109642801-109643009(+)$1	1	19	26	13.3770
((.((((	chr5:6848386-6848634(-)$1	1	108	115	12.8032
((((((.	chr22:20067945-20068242(+)$1	1	130	137	17.3114
.))))))	chr16:30107137-30107408(-)$1	1	232	239	13.6229
......)	chr15:93426497-93426753(+)$1	1	117	124	12.8032
(((...(	chr1:109642853-109643057(+)$1	1	36	43	13.6229
((.((((	chr20:2637503-2637711(+)$1	1	55	62	13.7868
.))).).	chr17:42401880-42402159(-)$1	1	100	107	12.9672
)))))))	chr2:97533797-97534042(-)$1	1	64	71	13.2131
.(.(...	chr2:97559964-97560223(-)$1	1	69	76	17.3114
((((..(	chr19:34875160-34875431(+)$1	1	191	198	13.4590
(.((.((	chr7:6677245-6677502(+)$1	1	6	13	12.8032
)))))))	chr22:39711180-39711410(-)$1	1	208	215	12.9672
))...))	chr11:62620309-62620524(-)$1	1	93	100	12.9672
(((((.(	chr11:811625-811832(+)$1	1	18	25	13.6229
(((((((	chr19:2271135-2271390(+)$1	1	113	120	17.3114
..)))))	chr2:234184489-234184732(+)$1	1	118	125	13.7868
).)))))	chr16:85627585-85627867(+)$1	1	111	118	13.3770
)(((((.	chr18:47017972-47018186(-)$1	1	69	76	13.4590
)))))))	chr19:7705284-7705608(+)$1	1	181	188	13.4590
)))))))	chr22:49980998-49981255(-)$1	1	95	102	17.3114
)))))))	chr3:13461567-13461855(-)$1	1	56	63	13.2131
..(((((	chr20:62330505-62330761(-)$1	1	97	104	17.3114
))))))(	chr12:125398883-125399120(-)$1	1	40	47	13.4590
......)	chr19:575249-575520(+)$1	1	130	137	17.3114
((.((((	chr7:66127597-66127851(+)$1	1	25	32	13.3770
(((((((	chr1:109642795-109643001(+)$1	1	25	32	13.3770
(((((((	chr16:160338-160598(-)$1	1	83	90	13.6229
(((((((	chr17:80107466-80107717(-)$1	1	3	10	13.7868
(((((((	chr16:81995421-81995670(+)$1	1	185	192	13.6229
((.((((	chr9:136217231-136217467(+)$1	1	36	43	13.6229
(((((((	chr11:1997963-1998266(+)$1	1	150	157	17.3114
((((((.	chr20:2637222-2637426(+)$1	1	20	27	17.3114
(((((((	chr11:819914-820161(+)$1	1	86	93	13.4590
)).))))	chr16:2215639-2215919(+)$1	1	168	175	13.1311
)))).))	chr3:169482657-169482900(-)$1	1	62	69	17.3114
(((....	chr3:13418961-13419228(-)$1	1	6	13	12.8852
.......	chr3:13419441-13419671(-)$1	1	99	106	13.1311
((..(.(	chr22:49974065-49974397(-)$1	1	31	38	13.4590
((((...	chr16:88840184-88840474(-)$1	1	202	209	13.4590
).(((((	chr11:123172085-123172307(+)$1	1	17	24	13.6229
....)))	chr19:49993154-49993363(+)$1	1	168	175	12.8032
))))))(	chr12:133356648-133356874(-)$1	1	65	72	13.7868

#PSSM
G : 0.67	g : 0.14	A : 0.04	C : 0.04	U : 0.03	a : 0.03	u : 0.01	
G : 0.70	g : 0.19	A : 0.06	C : 0.01	U : 0.01	
G : 0.75	g : 0.18	C : 0.04	c : 0.01	
U : 0.70	u : 0.16	A : 0.08	c : 0.03	C : 0.01	
G : 0.75	g : 0.18	A : 0.03	u : 0.01	U : 0.01	
G : 0.67	g : 0.13	U : 0.06	A : 0.04	u : 0.03	c : 0.01	a : 0.01	C : 0.01	
G : 0.80	g : 0.19	

#score	877.8852459016406
#seq	61
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_CDS_m3_run2.nuc.txt

#NT
AGG	chr7:26237347-26237593(-)$1	246	25	28	9.0000
AGG	chr6:26285603-26285848(-)$1	245	39	42	9.0000
AGG	chr17:76116794-76117062(-)$1	268	50	53	9.0000
AGG	chr6:26285504-26285803(-)$1	299	16	19	9.0000
AGG	chr6:26027353-26027575(-)$1	222	17	20	9.0000
AGG	chr16:31201578-31201815(+)$1	237	15	18	9.0000
AGG	chr22:50694421-50694668(-)$1	247	61	64	9.0000
AGG	chr9:19379314-19379566(-)$1	252	80	83	9.0000
AGG	chr6:26027258-26027485(-)$1	227	22	25	9.0000
AGG	chr16:31196228-31196553(+)$1	325	29	32	9.0000
AGG	chr6:26027307-26027529(-)$1	222	66	69	9.0000
AGG	chr16:89975240-89975560(+)$1	320	36	39	9.0000
AGG	chr19:805384-805661(+)$1	277	105	108	9.0000
AGG	chr2:178081371-178081611(+)$1	240	30	33	9.0000
AGG	chr8:110346553-110346808(+)$1	255	30	33	9.0000
AGG	chr7:26237204-26237463(-)$1	259	4	7	9.0000
AGG	chr2:178081486-178081724(+)$1	238	11	14	9.0000
AGG	chr16:31196353-31196604(+)$1	251	14	17	9.0000
AGG	chr2:178081324-178081571(+)$1	247	2	5	9.0000
AGG	chr22:50694468-50694722(-)$1	254	115	118	9.0000
AGG	chrX:152957477-152957728(+)$1	251	8	11	9.0000
AGG	chr7:26233145-26233415(-)$1	270	37	40	9.0000
AGG	chr11:290680-290953(+)$1	273	50	53	9.0000
AGG	chr19:49607697-49608001(+)$1	304	293	296	9.0000
AGG	chr1:78429210-78429509(-)$1	299	11	14	9.0000
AGG	chr6:26027329-26027553(-)$1	224	90	93	9.0000
AGG	chr6:86324670-86324932(-)$1	262	74	77	9.0000
AGG	chr22:20073523-20073796(+)$1	273	7	10	9.0000
AGG	chr17:56082236-56082587(-)$1	351	23	26	9.0000
AGG	chr6:26124414-26124680(+)$1	266	11	14	9.0000
AGG	chr6:26189129-26189339(-)$1	210	51	54	9.0000
AGG	chr16:28841029-28841298(+)$1	269	33	36	9.0000
AGG	chr8:23412155-23412438(+)$1	283	18	21	9.0000
AGG	chr10:32197496-32197766(-)$1	270	18	21	9.0000
AGG	chr9:19379271-19379514(-)$1	243	28	31	9.0000
AGG	chr7:26233101-26233345(-)$1	244	13	16	9.0000
AGG	chr17:76116991-76117214(-)$1	223	99	102	9.0000
AGG	chr6:26189139-26189391(-)$1	252	6	9	9.0000
AGG	chr17:46051772-46052129(+)$1	357	0	3	9.0000
AGG	chr5:179048268-179048515(-)$1	247	3	6	9.0000
AGG	chr18:43669718-43670001(-)$1	283	37	40	9.0000

#otherMatches

#Struct PSSM
hhh	chr18:43671546-43671779(-)$1	233	84	87	9.0000
ccm	chr7:26237347-26237593(-)$1	246	25	28	9.0000
>ee	chr6:26285603-26285848(-)$1	245	39	42	9.0000
tee	chr17:76116794-76117062(-)$1	268	50	53	9.0000
rcc	chr6:26285504-26285803(-)$1	299	16	19	9.0000
hhh	chr6:26027353-26027575(-)$1	222	17	20	9.0000
[cc	chr16:31201578-31201815(+)$1	237	15	18	9.0000
ooo	chr22:50694421-50694668(-)$1	247	61	64	9.0000
===	chr9:19379314-19379566(-)$1	252	80	83	9.0000
:::	chr6:26027258-26027485(-)$1	227	22	25	9.0000
KKB	chr16:31196228-31196553(+)$1	325	29	32	9.0000
===	chr6:26027307-26027529(-)$1	222	66	69	9.0000
mmm	chr16:89975240-89975560(+)$1	320	36	39	9.0000
eee	chr19:805384-805661(+)$1	277	105	108	9.0000
ddd	chr2:178081371-178081611(+)$1	240	30	33	9.0000
[bb	chr8:110346553-110346808(+)$1	255	30	33	9.0000
dds	chr7:26237204-26237463(-)$1	259	4	7	9.0000
:::	chr2:178081486-178081724(+)$1	238	11	14	9.0000
III	chr16:31196353-31196604(+)$1	251	14	17	9.0000
coo	chr2:178081324-178081571(+)$1	247	2	5	9.0000
ooo	chr22:50694468-50694722(-)$1	254	115	118	9.0000
:CC	chrX:152957477-152957728(+)$1	251	8	11	9.0000
ooo	chr7:26233145-26233415(-)$1	270	37	40	9.0000
ppp	chr11:290680-290953(+)$1	273	50	53	9.0000
CYY	chr19:49607697-49608001(+)$1	304	293	296	9.0000
HHN	chr1:78429210-78429509(-)$1	299	11	14	9.0000
===	chr6:26027329-26027553(-)$1	224	90	93	9.0000
eee	chr6:86324670-86324932(-)$1	262	74	77	9.0000
LGG	chr22:20073523-20073796(+)$1	273	7	10	9.0000
[cc	chr17:56082236-56082587(-)$1	351	23	26	9.0000
LLD	chr6:26124414-26124680(+)$1	266	11	14	9.0000
BBF	chr6:26189129-26189339(-)$1	210	51	54	9.0000
KEE	chr16:28841029-28841298(+)$1	269	33	36	9.0000
DDc	chr8:23412155-23412438(+)$1	283	18	21	9.0000
:::	chr10:32197496-32197766(-)$1	270	18	21	9.0000
##d	chr9:19379271-19379514(-)$1	243	28	31	9.0000
:::	chr7:26233101-26233345(-)$1	244	13	16	9.0000
]bb	chr17:76116991-76117214(-)$1	223	99	102	9.0000
ddd	chr6:26189139-26189391(-)$1	252	6	9	9.0000
:BB	chr17:46051772-46052129(+)$1	357	0	3	9.0000
:FF	chr5:179048268-179048515(-)$1	247	3	6	9.0000
ddc	chr18:43669718-43670001(-)$1	283	37	40	9.0000

#DB
(((	chr18:43671546-43671779(-)$1	1	84	87	9.0000
((.	chr7:26237347-26237593(-)$1	1	25	28	9.0000
.))	chr6:26285603-26285848(-)$1	1	39	42	9.0000
.))	chr17:76116794-76117062(-)$1	1	50	53	9.0000
.))	chr6:26285504-26285803(-)$1	1	16	19	9.0000
(((	chr6:26027353-26027575(-)$1	1	17	20	9.0000
.((	chr16:31201578-31201815(+)$1	1	15	18	9.0000
...	chr22:50694421-50694668(-)$1	1	61	64	9.0000
)))	chr9:19379314-19379566(-)$1	1	80	83	9.0000
...	chr6:26027258-26027485(-)$1	1	22	25	9.0000
..(	chr16:31196228-31196553(+)$1	1	29	32	9.0000
)))	chr6:26027307-26027529(-)$1	1	66	69	9.0000
...	chr16:89975240-89975560(+)$1	1	36	39	9.0000
(((	chr19:805384-805661(+)$1	1	105	108	9.0000
)))	chr2:178081371-178081611(+)$1	1	30	33	9.0000
.((	chr8:110346553-110346808(+)$1	1	30	33	9.0000
((.	chr7:26237204-26237463(-)$1	1	4	7	9.0000
...	chr2:178081486-178081724(+)$1	1	11	14	9.0000
(((	chr16:31196353-31196604(+)$1	1	14	17	9.0000
(..	chr2:178081324-178081571(+)$1	1	2	5	9.0000
...	chr22:50694468-50694722(-)$1	1	115	118	9.0000
.((	chrX:152957477-152957728(+)$1	1	8	11	9.0000
...	chr7:26233145-26233415(-)$1	1	37	40	9.0000
...	chr11:290680-290953(+)$1	1	50	53	9.0000
)..	chr19:49607697-49608001(+)$1	1	293	296	9.0000
((.	chr1:78429210-78429509(-)$1	1	11	14	9.0000
)))	chr6:26027329-26027553(-)$1	1	90	93	9.0000
)))	chr6:86324670-86324932(-)$1	1	74	77	9.0000
.((	chr22:20073523-20073796(+)$1	1	7	10	9.0000
.((	chr17:56082236-56082587(-)$1	1	23	26	9.0000
..(	chr6:26124414-26124680(+)$1	1	11	14	9.0000
(((	chr6:26189129-26189339(-)$1	1	51	54	9.0000
.((	chr16:28841029-28841298(+)$1	1	33	36	9.0000
(((	chr8:23412155-23412438(+)$1	1	18	21	9.0000
...	chr10:32197496-32197766(-)$1	1	18	21	9.0000
..(	chr9:19379271-19379514(-)$1	1	28	31	9.0000
...	chr7:26233101-26233345(-)$1	1	13	16	9.0000
.))	chr17:76116991-76117214(-)$1	1	99	102	9.0000
(((	chr6:26189139-26189391(-)$1	1	6	9	9.0000
.((	chr17:46051772-46052129(+)$1	1	0	3	9.0000
.((	chr5:179048268-179048515(-)$1	1	3	6	9.0000
(((	chr18:43669718-43670001(-)$1	1	37	40	9.0000

#PSSM
A : 1.00	
G : 1.00	
G : 1.00	

#score	378.00000000000006
#seq	42
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_CDS_m1_run1.nuc.txt

#NT
GGGGGGC	chr3:184100772-184101020(+)$1	248	190	197	12.5217
GCAGGGC	chr20:61467546-61467768(+)$1	222	90	97	13.2463
UGAGGGC	chr16:23490989-23491285(-)$1	296	201	208	12.8840
GCAGGGC	chr8:145619358-145619602(-)$1	244	162	169	13.2463
GGAGGGC	chr22:38020928-38021172(+)$1	244	178	185	16.8695
GGAGGGC	chr9:139753620-139753863(+)$1	243	179	186	16.8695
GGAGGGG	chr9:117063470-117063696(+)$1	226	176	183	13.3188
GGAGGGG	chr17:79865572-79865802(-)$1	230	207	214	13.3188
GGAGUGC	chr3:49052862-49053154(+)$1	292	12	19	12.4492
GGAGGGC	chr11:64559291-64559565(-)$1	274	251	258	16.8695
GGCGGGC	chr21:46930019-46930266(+)$1	247	56	63	12.5217
GGAGGGU	chr22:21350890-21351157(+)$1	267	41	48	13.1014
UGAGGGC	chr21:46913318-46913571(+)$1	253	172	179	12.8840
GGAGGGG	chr7:100285386-100285606(-)$1	220	49	56	13.3188
GGAGGGG	chr21:46912504-46912718(+)$1	214	163	170	13.3188
CGAGGGC	chr19:50367120-50367414(-)$1	294	245	252	12.7391
GGAAGGC	chr3:49158765-49159038(-)$1	273	247	254	12.1594
GGAGGCC	chr20:32246476-32246740(-)$1	264	32	39	13.1014
CGAGGGC	chr22:50892844-50893105(-)$1	261	2	9	12.7391
GCAGGGC	chr16:89812890-89813111(-)$1	221	11	18	13.2463
GGGGGGC	chr19:6751200-6751469(+)$1	269	43	50	12.5217
GGAGGGG	chr20:61460203-61460419(+)$1	216	6	13	13.3188
GGAGGGC	chr1:110171866-110172147(+)$1	281	20	27	16.8695
GGAGGCC	chr19:12880604-12880875(-)$1	271	6	13	13.1014
GGAGGGU	chr19:36113451-36113736(+)$1	285	274	281	13.1014
GGAGGGU	chr19:49611439-49611704(+)$1	265	155	162	13.1014
GGAGCGC	chr19:49611043-49611272(+)$1	229	59	66	12.3768
GGAGGCC	chr19:47223699-47224076(-)$1	377	130	137	13.1014
GGAGUGC	chr11:67817368-67817620(+)$1	252	26	33	12.4492
GGAGGCC	chr20:57288965-57289249(+)$1	284	60	67	13.1014
UGAGGGC	chr17:80399994-80400299(+)$1	305	4	11	12.8840
AGAGGGC	chr19:14040312-14040551(+)$1	239	119	126	12.5942
GGAGGGG	chr3:8665131-8665444(-)$1	313	222	229	13.3188
GGAAGGC	chr11:47199821-47200093(-)$1	272	96	103	12.1594
GGAGGGA	chrX:47088064-47088309(+)$1	245	135	142	12.9565
GGUGGGC	chr11:61112892-61113136(+)$1	244	175	182	12.5942
GGAGGGU	chr3:48453590-48453810(-)$1	220	199	206	13.1014
CGAGGGC	chr21:46924313-46924547(+)$1	234	213	220	12.7391
GGUGGGC	chr1:1231704-1231941(-)$1	237	136	143	12.5942
GGCGGGC	chr16:70697698-70698006(-)$1	308	9	16	12.5217
UGAGGGC	chr17:38061633-38061850(-)$1	217	188	195	12.8840
GCAGGGC	chr17:38182410-38182672(-)$1	262	217	224	13.2463
GGAGGCC	chr6:30893557-30893774(+)$1	217	46	53	13.1014
GCAGGGC	chr6:30890402-30890651(+)$1	249	34	41	13.2463
UGAGGGC	chr16:31202321-31202531(+)$1	210	197	204	12.8840
GAAGGGC	chr14:23530426-23530644(-)$1	218	53	60	12.6666
GCAGGGC	chr11:62458158-62458439(-)$1	281	96	103	13.2463
GGAGGGA	chr9:117029702-117029937(+)$1	235	54	61	12.9565
GGAGAGC	chr20:61459174-61459392(+)$1	218	145	152	12.5217
GGAGGCC	chr17:46054050-46054289(+)$1	239	142	149	13.1014
GGAGGGC	chr7:100280669-100280921(-)$1	252	211	218	16.8695
GGAGGGC	chr3:9974537-9974822(+)$1	285	28	35	16.8695
GGAGGGC	chr3:48445859-48446097(-)$1	238	26	33	16.8695
GGUGGGC	chr20:60886710-60886931(-)$1	221	43	50	12.5942
GGAGGUC	chr3:184104351-184104611(+)$1	260	195	202	12.6666
GGAGAGC	chr21:47878910-47879227(+)$1	317	187	194	12.5217
GCAGGGC	chr19:2233777-2234033(-)$1	256	43	50	13.2463
GGAGGGC	chr11:726635-726849(+)$1	214	64	71	16.8695
GGAGGCC	chr16:88782362-88782623(-)$1	261	100	107	13.1014
GGAGGGC	chr16:23491877-23492190(-)$1	313	160	167	16.8695
GCAGGGC	chr22:51010392-51010647(-)$1	255	40	47	13.2463
GGAGGAC	chr17:73231095-73231360(+)$1	265	143	150	12.7391
GGAGGGC	chr22:38021803-38022057(+)$1	254	176	183	16.8695
GGAGGAC	chr17:38061999-38062265(-)$1	266	62	69	12.7391
GGAGGGG	chr9:139735100-139735322(+)$1	222	81	88	13.3188
GCAGGGC	chr3:48663268-48663531(-)$1	263	151	158	13.2463
GGAGGGC	chrX:48674447-48674769(+)$1	322	22	29	16.8695
GGAGGGC	chr11:726617-726835(+)$1	218	82	89	16.8695

#otherMatches

#Struct PSSM
cc]ccc2	chr9:117032948-117033160(+)$1	212	59	66	12.5217
E}EEEEE	chr3:184100772-184101020(+)$1	248	190	197	12.5217
444ccc]	chr20:61467546-61467768(+)$1	222	90	97	13.2463
c333a]e	chr16:23490989-23491285(-)$1	296	201	208	12.8840
e]dddd:	chr8:145619358-145619602(-)$1	244	162	169	13.2463
EEEECCC	chr22:38020928-38021172(+)$1	244	178	185	16.8695
GGGGeee	chr9:139753620-139753863(+)$1	243	179	186	16.8695
eeeebb[	chr9:117063470-117063696(+)$1	226	176	183	13.3188
eeeeemm	chr17:79865572-79865802(-)$1	230	207	214	13.3188
[a[a[bb	chr3:49052862-49053154(+)$1	292	12	19	12.4492
333eeee	chr11:64559291-64559565(-)$1	274	251	258	16.8695
ddddbbo	chr21:46930019-46930266(+)$1	247	56	63	12.5217
cciiiii	chr22:21350890-21351157(+)$1	267	41	48	13.1014
cmmmmcc	chr21:46913318-46913571(+)$1	253	172	179	12.8840
gg!!===	chr7:100285386-100285606(-)$1	220	49	56	13.3188
fffmmmm	chr21:46912504-46912718(+)$1	214	163	170	13.3188
emmmmee	chr19:50367120-50367414(-)$1	294	245	252	12.7391
ffffffF	chr3:49158765-49159038(-)$1	273	247	254	12.1594
ldddd33	chr20:32246476-32246740(-)$1	264	32	39	13.1014
c!!eeee	chr22:50892844-50893105(-)$1	261	2	9	12.7391
:ddddmm	chr16:89812890-89813111(-)$1	221	11	18	13.2463
ggggggg	chr19:6751200-6751469(+)$1	269	43	50	12.5217
iiiiiii	chr20:61460203-61460419(+)$1	216	6	13	13.3188
A{CCCee	chr1:110171866-110172147(+)$1	281	20	27	16.8695
hh[cccl	chr19:12880604-12880875(-)$1	271	6	13	13.1014
dnnnnnd	chr19:36113451-36113736(+)$1	285	274	281	13.1014
:::::dd	chr19:49611439-49611704(+)$1	265	155	162	13.1014
affffff	chr19:49611043-49611272(+)$1	229	59	66	12.3768
bbdddd[	chr19:47223699-47224076(-)$1	377	130	137	13.1014
!ddddbb	chr11:67817368-67817620(+)$1	252	26	33	12.4492
bmmmmbb	chr20:57288965-57289249(+)$1	284	60	67	13.1014
ggggggg	chr17:80399994-80400299(+)$1	305	4	11	12.8840
cbbabb]	chr19:14040312-14040551(+)$1	239	119	126	12.5942
==:DDDD	chr3:8665131-8665444(-)$1	313	222	229	13.3188
ff!!bbl	chr11:47199821-47200093(-)$1	272	96	103	12.1594
beeeee[	chrX:47088064-47088309(+)$1	245	135	142	12.9565
EEEHHHH	chr11:61112892-61113136(+)$1	244	175	182	12.5942
ggggggg	chr3:48453590-48453810(-)$1	220	199	206	13.1014
C::dddd	chr21:46924313-46924547(+)$1	234	213	220	12.7391
eee:eee	chr1:1231704-1231941(-)$1	237	136	143	12.5942
dddDDDD	chr16:70697698-70698006(-)$1	308	9	16	12.5217
:::CCC}	chr17:38061633-38061850(-)$1	217	188	195	12.8840
BB}DDDD	chr17:38182410-38182672(-)$1	262	217	224	13.2463
eeeee""	chr6:30893557-30893774(+)$1	217	46	53	13.1014
FFFFFEE	chr6:30890402-30890651(+)$1	249	34	41	13.2463
IIHHHHH	chr16:31202321-31202531(+)$1	210	197	204	12.8840
nnndddd	chr14:23530426-23530644(-)$1	218	53	60	12.6666
eeeee::	chr11:62458158-62458439(-)$1	281	96	103	13.2463
iii::::	chr9:117029702-117029937(+)$1	235	54	61	12.9565
ddddccc	chr20:61459174-61459392(+)$1	218	145	152	12.5217
eee]ddd	chr17:46054050-46054289(+)$1	239	142	149	13.1014
FFFFFFd	chr7:100280669-100280921(-)$1	252	211	218	16.8695
####ccc	chr3:9974537-9974822(+)$1	285	28	35	16.8695
bb]bbee	chr3:48445859-48446097(-)$1	238	26	33	16.8695
hhhhhhh	chr20:60886710-60886931(-)$1	221	43	50	12.5942
qqqqqqe	chr3:184104351-184104611(+)$1	260	195	202	12.6666
GGGG:::	chr21:47878910-47879227(+)$1	317	187	194	12.5217
HHHHHHH	chr19:2233777-2234033(-)$1	256	43	50	13.2463
JJJJJJJ	chr11:726635-726849(+)$1	214	64	71	16.8695
a[a[eee	chr16:88782362-88782623(-)$1	261	100	107	13.1014
eeeeebb	chr16:23491877-23492190(-)$1	313	160	167	16.8695
CC=====	chr22:51010392-51010647(-)$1	255	40	47	13.2463
ccc"""c	chr17:73231095-73231360(+)$1	265	143	150	12.7391
44hhhhh	chr22:38021803-38022057(+)$1	254	176	183	16.8695
dddeeee	chr17:38061999-38062265(-)$1	266	62	69	12.7391
GGGGGGK	chr9:139735100-139735322(+)$1	222	81	88	13.3188
gggeeee	chr3:48663268-48663531(-)$1	263	151	158	13.2463
CC{CCCL	chrX:48674447-48674769(+)$1	322	22	29	16.8695
JJJJJJJ	chr11:726617-726835(+)$1	218	82	89	16.8695

#DB
)).))).	chr9:117032948-117033160(+)$1	1	59	66	12.5217
).)))))	chr3:184100772-184101020(+)$1	1	190	197	12.5217
...))).	chr20:61467546-61467768(+)$1	1	90	97	13.2463
)...).)	chr16:23490989-23491285(-)$1	1	201	208	12.8840
).)))).	chr8:145619358-145619602(-)$1	1	162	169	13.2463
)))))))	chr22:38020928-38021172(+)$1	1	178	185	16.8695
))))(((	chr9:139753620-139753863(+)$1	1	179	186	16.8695
((((((.	chr9:117063470-117063696(+)$1	1	176	183	13.3188
(((((..	chr17:79865572-79865802(-)$1	1	207	214	13.3188
.(.(.((	chr3:49052862-49053154(+)$1	1	12	19	12.4492
...))))	chr11:64559291-64559565(-)$1	1	251	258	16.8695
((((((.	chr21:46930019-46930266(+)$1	1	56	63	12.5217
)))))))	chr22:21350890-21351157(+)$1	1	41	48	13.1014
(....))	chr21:46913318-46913571(+)$1	1	172	179	12.8840
((..(((	chr7:100285386-100285606(-)$1	1	49	56	13.3188
(((....	chr21:46912504-46912718(+)$1	1	163	170	13.3188
(....))	chr19:50367120-50367414(-)$1	1	245	252	12.7391
)))))))	chr3:49158765-49159038(-)$1	1	247	254	12.1594
.))))..	chr20:32246476-32246740(-)$1	1	32	39	13.1014
(..((((	chr22:50892844-50893105(-)$1	1	2	9	12.7391
.((((..	chr16:89812890-89813111(-)$1	1	11	18	13.2463
(((((((	chr19:6751200-6751469(+)$1	1	43	50	12.5217
(((((((	chr20:61460203-61460419(+)$1	1	6	13	13.3188
(.(((((	chr1:110171866-110172147(+)$1	1	20	27	16.8695
((.(((.	chr19:12880604-12880875(-)$1	1	6	13	13.1014
(.....)	chr19:36113451-36113736(+)$1	1	274	281	13.1014
.....((	chr19:49611439-49611704(+)$1	1	155	162	13.1014
(((((((	chr19:49611043-49611272(+)$1	1	59	66	12.3768
((((((.	chr19:47223699-47224076(-)$1	1	130	137	13.1014
.((((((	chr11:67817368-67817620(+)$1	1	26	33	12.4492
(....))	chr20:57288965-57289249(+)$1	1	60	67	13.1014
(((((((	chr17:80399994-80400299(+)$1	1	4	11	12.8840
)))))).	chr19:14040312-14040551(+)$1	1	119	126	12.5942
)).))))	chr3:8665131-8665444(-)$1	1	222	229	13.3188
((..((.	chr11:47199821-47200093(-)$1	1	96	103	12.1594
((((((.	chrX:47088064-47088309(+)$1	1	135	142	12.9565
(((((((	chr11:61112892-61113136(+)$1	1	175	182	12.5942
(((((((	chr3:48453590-48453810(-)$1	1	199	206	13.1014
)..((((	chr21:46924313-46924547(+)$1	1	213	220	12.7391
))).(((	chr1:1231704-1231941(-)$1	1	136	143	12.5942
)))((((	chr16:70697698-70698006(-)$1	1	9	16	12.5217
...))).	chr17:38061633-38061850(-)$1	1	188	195	12.8840
)).))))	chr17:38182410-38182672(-)$1	1	217	224	13.2463
(((((..	chr6:30893557-30893774(+)$1	1	46	53	13.1014
(((((((	chr6:30890402-30890651(+)$1	1	34	41	13.2463
)))))))	chr16:31202321-31202531(+)$1	1	197	204	12.8840
...))))	chr14:23530426-23530644(-)$1	1	53	60	12.6666
)))))..	chr11:62458158-62458439(-)$1	1	96	103	13.2463
)))....	chr9:117029702-117029937(+)$1	1	54	61	12.9565
(((((((	chr20:61459174-61459392(+)$1	1	145	152	12.5217
))).)))	chr17:46054050-46054289(+)$1	1	142	149	13.1014
))))))(	chr7:100280669-100280921(-)$1	1	211	218	16.8695
....(((	chr3:9974537-9974822(+)$1	1	28	35	16.8695
)).))((	chr3:48445859-48446097(-)$1	1	26	33	16.8695
)))))))	chr20:60886710-60886931(-)$1	1	43	50	12.5942
......)	chr3:184104351-184104611(+)$1	1	195	202	12.6666
))))...	chr21:47878910-47879227(+)$1	1	187	194	12.5217
(((((((	chr19:2233777-2234033(-)$1	1	43	50	13.2463
(((((((	chr11:726635-726849(+)$1	1	64	71	16.8695
(.(.(((	chr16:88782362-88782623(-)$1	1	100	107	13.1014
)))))((	chr16:23491877-23492190(-)$1	1	160	167	16.8695
(((((((	chr22:51010392-51010647(-)$1	1	40	47	13.2463
(((...(	chr17:73231095-73231360(+)$1	1	143	150	12.7391
..)))))	chr22:38021803-38022057(+)$1	1	176	183	16.8695
)))))))	chr17:38061999-38062265(-)$1	1	62	69	12.7391
((((((.	chr9:139735100-139735322(+)$1	1	81	88	13.3188
)))))))	chr3:48663268-48663531(-)$1	1	151	158	13.2463
((.(((.	chrX:48674447-48674769(+)$1	1	22	29	16.8695
(((((((	chr11:726617-726835(+)$1	1	82	89	16.8695

#PSSM
G : 0.86	U : 0.07	C : 0.04	A : 0.01	
G : 0.85	C : 0.13	A : 0.01	
A : 0.89	U : 0.04	G : 0.02	C : 0.02	
G : 0.97	A : 0.02	
G : 0.91	A : 0.04	U : 0.02	C : 0.01	
G : 0.85	C : 0.10	A : 0.02	U : 0.01	
C : 0.81	G : 0.10	U : 0.05	A : 0.02	

#score	937.985507246375
#seq	69
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_transcript_m3_run1.nuc.txt

#NT
uaaaaa	chr3:196207707-196207986(-)$1	279	104	110	16.5714
UAAAAA	chr5:112080791-112081107(+)$1	316	117	123	16.5714
UAAAAU	chr8:99695394-99695671(-)$1	277	71	77	14.4285
uaaaaa	chr15:30966994-30967244(+)$1	250	194	200	16.5714
uaaaaa	chr6:34322829-34323095(-)$1	266	14	20	16.5714
UAAAAA	chr2:162194437-162194736(+)$1	299	62	68	16.5714
uaAAAA	chr19:9769192-9769480(-)$1	288	34	40	16.5714
UAAAAU	chr4:103729445-103729719(-)$1	274	3	9	14.4285
UAAAAU	chr22:19432475-19432742(-)$1	267	3	9	14.4285
UAAAAU	chr11:3896909-3897194(+)$1	285	132	138	14.4285
UAAAAU	chr11:65266867-65267086(+)$1	219	17	23	14.4285
uaaaaa	chr3:9501866-9502120(+)$1	254	1	7	16.5714
uaaaaa	chr6:2965241-2965538(-)$1	297	179	185	16.5714
UAAAAU	chr6:99868525-99868794(-)$1	269	12	18	14.4285
UAAAAU	chr11:65266927-65267134(+)$1	207	11	17	14.4285
UAAAAA	chrX:138021400-138021678(-)$1	278	129	135	16.5714
uaaaaa	chr7:119375284-119375579(-)$1	295	125	131	16.5714
uaaaaa	chr22:48121225-48121475(+)$1	250	76	82	16.5714
uaaaaa	chr2:112098810-112099099(-)$1	289	18	24	16.5714
UAAAAA	chr18:9921396-9921655(+)$1	259	94	100	16.5714
UAAAAU	chrX:13385966-13386221(+)$1	255	181	187	14.4285
uaaaaa	chr12:62689397-62689652(+)$1	255	104	110	16.5714
UAAAAA	chr6:170108344-170108622(-)$1	278	38	44	16.5714
uaaaaa	chr11:105287352-105287615(-)$1	263	91	97	16.5714
UAAAAU	chr7:119397172-119397392(-)$1	220	1	7	14.4285
uaaaaa	chr15:89841637-89841893(+)$1	256	107	113	16.5714
uaaaau	chr17:68039073-68039364(-)$1	291	99	105	14.4285
UAAAAA	chr6:2969678-2970033(-)$1	355	168	174	16.5714
UAAAAA	chr4:762434-762675(-)$1	241	5	11	16.5714
UAAAAA	chr9:133690233-133690497(+)$1	264	68	74	16.5714
uaaaaa	chr5:53710132-53710437(+)$1	305	76	82	16.5714
UAAAAA	chr12:62656073-62656376(+)$1	303	94	100	16.5714
uaaaaa	chr6:153147559-153147827(-)$1	268	226	232	16.5714
uaaaaa	chr5:228878-229136(+)$1	258	136	142	16.5714
UAAAAA	chr7:119488612-119488830(-)$1	218	121	127	16.5714
UAAAAA	chr1:246286830-246287101(-)$1	271	124	130	16.5714
UAAAAA	chr3:37303374-37303652(+)$1	278	134	140	16.5714
UAAAAU	chr1:51971779-51972080(-)$1	301	95	101	14.4285
uaaaau	chr7:119490449-119490705(-)$1	256	12	18	14.4285
UAAAAU	chr11:65266886-65267092(+)$1	206	52	58	14.4285
uaaaaa	chr15:58283806-58284071(-)$1	265	132	138	16.5714
UAAAAA	chr3:6656555-6656829(+)$1	274	103	109	16.5714
UAAAAA	chrX:53664732-53665037(-)$1	305	151	157	16.5714
uaaaaa	chr4:56494885-56495152(-)$1	267	5	11	16.5714
UAAAAU	chr1:40313921-40314256(-)$1	335	212	218	14.4285
uaaAAA	chr11:5415107-5415382(-)$1	275	75	81	16.5714
uaaaaa	chr5:12646277-12646528(+)$1	251	164	170	16.5714
uaaaaa	chr1:51217846-51218104(-)$1	258	92	98	16.5714
UAAAAA	chr4:151492825-151493135(-)$1	310	153	159	16.5714
UAAAAA	chr10:81521825-81522143(-)$1	318	131	137	16.5714
UAAAAA	chr2:44169531-44169820(-)$1	289	84	90	16.5714
uaaaaa	chr21:23600495-23600770(+)$1	275	93	99	16.5714
uaaaau	chr7:119490016-119490318(-)$1	302	118	124	14.4285
Uaaaaa	chr6:147656572-147656834(+)$1	262	208	214	16.5714
uaaaau	chr2:68425943-68426194(-)$1	251	136	142	14.4285

#otherMatches

#Struct PSSM
:::::F	chr5:12714366-12714624(+)$1	258	19	25	16.5714
H_____	chr3:196207707-196207986(-)$1	279	104	110	16.5714
4444hh	chr5:112080791-112081107(+)$1	316	117	123	16.5714
ddoooo	chr8:99695394-99695671(-)$1	277	71	77	14.4285
eee"""	chr15:30966994-30967244(+)$1	250	194	200	16.5714
CCC:::	chr6:34322829-34323095(-)$1	266	14	20	16.5714
::::::	chr2:162194437-162194736(+)$1	299	62	68	16.5714
uuuuuu	chr19:9769192-9769480(-)$1	288	34	40	16.5714
:::fff	chr4:103729445-103729719(-)$1	274	3	9	14.4285
ddnnnn	chr22:19432475-19432742(-)$1	267	3	9	14.4285
cc::::	chr11:3896909-3897194(+)$1	285	132	138	14.4285
==&&&&	chr11:65266867-65267086(+)$1	219	17	23	14.4285
::::::	chr3:9501866-9502120(+)$1	254	1	7	16.5714
qqqqqq	chr6:2965241-2965538(-)$1	297	179	185	16.5714
:FFFFF	chr6:99868525-99868794(-)$1	269	12	18	14.4285
PPPPPE	chr11:65266927-65267134(+)$1	207	11	17	14.4285
^^^^^^	chrX:138021400-138021678(-)$1	278	129	135	16.5714
::::::	chr7:119375284-119375579(-)$1	295	125	131	16.5714
::::::	chr22:48121225-48121475(+)$1	250	76	82	16.5714
:::::e	chr2:112098810-112099099(-)$1	289	18	24	16.5714
ccc+++	chr18:9921396-9921655(+)$1	259	94	100	16.5714
::::::	chrX:13385966-13386221(+)$1	255	181	187	14.4285
+++++e	chr12:62689397-62689652(+)$1	255	104	110	16.5714
ccc]ff	chr6:170108344-170108622(-)$1	278	38	44	16.5714
ffff::	chr11:105287352-105287615(-)$1	263	91	97	16.5714
::::::	chr7:119397172-119397392(-)$1	220	1	7	14.4285
eee333	chr15:89841637-89841893(+)$1	256	107	113	16.5714
::::::	chr17:68039073-68039364(-)$1	291	99	105	14.4285
::::::	chr6:2969678-2970033(-)$1	355	168	174	16.5714
ennnnn	chr4:762434-762675(-)$1	241	5	11	16.5714
dddd::	chr9:133690233-133690497(+)$1	264	68	74	16.5714
++++++	chr5:53710132-53710437(+)$1	305	76	82	16.5714
ssssss	chr12:62656073-62656376(+)$1	303	94	100	16.5714
d:::::	chr6:153147559-153147827(-)$1	268	226	232	16.5714
::::::	chr5:228878-229136(+)$1	258	136	142	16.5714
ssssss	chr7:119488612-119488830(-)$1	218	121	127	16.5714
cc"""a	chr1:246286830-246287101(-)$1	271	124	130	16.5714
eeee^^	chr3:37303374-37303652(+)$1	278	134	140	16.5714
::::::	chr1:51971779-51972080(-)$1	301	95	101	14.4285
::::::	chr7:119490449-119490705(-)$1	256	12	18	14.4285
eellle	chr11:65266886-65267092(+)$1	206	52	58	14.4285
:::ggg	chr15:58283806-58284071(-)$1	265	132	138	16.5714
_____E	chr3:6656555-6656829(+)$1	274	103	109	16.5714
dd:DDD	chrX:53664732-53665037(-)$1	305	151	157	16.5714
::::::	chr4:56494885-56495152(-)$1	267	5	11	16.5714
II////	chr1:40313921-40314256(-)$1	335	212	218	14.4285
ggggnn	chr11:5415107-5415382(-)$1	275	75	81	16.5714
::::::	chr5:12646277-12646528(+)$1	251	164	170	16.5714
xxxxxx	chr1:51217846-51218104(-)$1	258	92	98	16.5714
gggHHH	chr4:151492825-151493135(-)$1	310	153	159	16.5714
oogggg	chr10:81521825-81522143(-)$1	318	131	137	16.5714
]fffff	chr2:44169531-44169820(-)$1	289	84	90	16.5714
h77777	chr21:23600495-23600770(+)$1	275	93	99	16.5714
::::::	chr7:119490016-119490318(-)$1	302	118	124	14.4285
ffff:f	chr6:147656572-147656834(+)$1	262	208	214	16.5714
eetttt	chr2:68425943-68426194(-)$1	251	136	142	14.4285

#DB
.....(	chr5:12714366-12714624(+)$1	1	19	25	16.5714
).....	chr3:196207707-196207986(-)$1	1	104	110	16.5714
....))	chr5:112080791-112081107(+)$1	1	117	123	16.5714
((....	chr8:99695394-99695671(-)$1	1	71	77	14.4285
(((...	chr15:30966994-30967244(+)$1	1	194	200	16.5714
(((...	chr6:34322829-34323095(-)$1	1	14	20	16.5714
......	chr2:162194437-162194736(+)$1	1	62	68	16.5714
......	chr19:9769192-9769480(-)$1	1	34	40	16.5714
...(((	chr4:103729445-103729719(-)$1	1	3	9	14.4285
((....	chr22:19432475-19432742(-)$1	1	3	9	14.4285
))....	chr11:3896909-3897194(+)$1	1	132	138	14.4285
((....	chr11:65266867-65267086(+)$1	1	17	23	14.4285
......	chr3:9501866-9502120(+)$1	1	1	7	16.5714
......	chr6:2965241-2965538(-)$1	1	179	185	16.5714
.(((((	chr6:99868525-99868794(-)$1	1	12	18	14.4285
.....(	chr11:65266927-65267134(+)$1	1	11	17	14.4285
......	chrX:138021400-138021678(-)$1	1	129	135	16.5714
......	chr7:119375284-119375579(-)$1	1	125	131	16.5714
......	chr22:48121225-48121475(+)$1	1	76	82	16.5714
.....(	chr2:112098810-112099099(-)$1	1	18	24	16.5714
(((...	chr18:9921396-9921655(+)$1	1	94	100	16.5714
......	chrX:13385966-13386221(+)$1	1	181	187	14.4285
.....(	chr12:62689397-62689652(+)$1	1	104	110	16.5714
))).))	chr6:170108344-170108622(-)$1	1	38	44	16.5714
))))..	chr11:105287352-105287615(-)$1	1	91	97	16.5714
......	chr7:119397172-119397392(-)$1	1	1	7	14.4285
)))...	chr15:89841637-89841893(+)$1	1	107	113	16.5714
......	chr17:68039073-68039364(-)$1	1	99	105	14.4285
......	chr6:2969678-2970033(-)$1	1	168	174	16.5714
(.....	chr4:762434-762675(-)$1	1	5	11	16.5714
))))..	chr9:133690233-133690497(+)$1	1	68	74	16.5714
......	chr5:53710132-53710437(+)$1	1	76	82	16.5714
......	chr12:62656073-62656376(+)$1	1	94	100	16.5714
).....	chr6:153147559-153147827(-)$1	1	226	232	16.5714
......	chr5:228878-229136(+)$1	1	136	142	16.5714
......	chr7:119488612-119488830(-)$1	1	121	127	16.5714
((...(	chr1:246286830-246287101(-)$1	1	124	130	16.5714
((((..	chr3:37303374-37303652(+)$1	1	134	140	16.5714
......	chr1:51971779-51972080(-)$1	1	95	101	14.4285
......	chr7:119490449-119490705(-)$1	1	12	18	14.4285
((...)	chr11:65266886-65267092(+)$1	1	52	58	14.4285
...(((	chr15:58283806-58284071(-)$1	1	132	138	16.5714
.....)	chr3:6656555-6656829(+)$1	1	103	109	16.5714
)).)))	chrX:53664732-53665037(-)$1	1	151	157	16.5714
......	chr4:56494885-56495152(-)$1	1	5	11	16.5714
))....	chr1:40313921-40314256(-)$1	1	212	218	14.4285
((((..	chr11:5415107-5415382(-)$1	1	75	81	16.5714
......	chr5:12646277-12646528(+)$1	1	164	170	16.5714
......	chr1:51217846-51218104(-)$1	1	92	98	16.5714
))))))	chr4:151492825-151493135(-)$1	1	153	159	16.5714
..))))	chr10:81521825-81522143(-)$1	1	131	137	16.5714
.)))))	chr2:44169531-44169820(-)$1	1	84	90	16.5714
).....	chr21:23600495-23600770(+)$1	1	93	99	16.5714
......	chr7:119490016-119490318(-)$1	1	118	124	14.4285
)))).(	chr6:147656572-147656834(+)$1	1	208	214	16.5714
((....	chr2:68425943-68426194(-)$1	1	136	142	14.4285

#PSSM
U : 0.55	u : 0.44	
A : 0.53	a : 0.46	
A : 0.55	a : 0.44	
A : 0.57	a : 0.42	
A : 0.57	a : 0.42	
A : 0.35	a : 0.35	U : 0.21	u : 0.07	

#score	893.7142857142853
#seq	56
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF854NXI_HNRNPU_UTR_m1_run1.nuc.txt

#NT
UGGGGGAGGGGCCUCUGGGUUUCGGAGGUGAGGGACGGGGGUGGCGGGGAGGAUUCC	chr19:41770842-41771100(+)$1	258	63	120	74.7500
AGGGGGUGUGGCCUCUUGGGGAAGGCGGGGCCGGGAGAGGGCAAGGGUGUGGCCUCU	chr3:49045342-49045634(+)$1	292	67	124	67.2500
agugagugaagcggaCGCGCGagggaggggagggaagggaagggaagggaagggGGG	chr6:86352546-86352826(-)$1	280	56	113	56.0000

#otherMatches

#Struct PSSM
ffff]a4444==========cccccc]ffffff22ggggggg]ccc333iiiiiiii	chr12:30907477-30907733(-)$1	256	143	200	66.0000
gggga22cccggggggg!!eeeeemmmmeeeee22ggggggg::BB{DDDDKKIIII	chr19:41770842-41771100(+)$1	258	63	120	74.7500
=======lll===========22bbhhhhhhhh:ffffff[bboooooobb]fffff	chr3:49045342-49045634(+)$1	292	67	124	67.2500
nna]ccc333bba!!bbffffff"""dddd!!a####dddd[bb!!bb$$$$$dddd	chr6:86352546-86352826(-)$1	280	56	113	56.0000

#DB
)))).)....)))))))))))))))).))))))..))))))).)))...))))))))	chr12:30907477-30907733(-)$1	1	143	200	66.0000
)))))..)))(((((((..(((((....)))))..)))))))..((.((((..((((	chr19:41770842-41771100(+)$1	1	63	120	74.7500
(((((((...)))))))))))..)))))))))).((((((.((......)).)))))	chr3:49045342-49045634(+)$1	1	67	124	67.2500
..).)))...))(..((((((((...((((..(....((((.((..((.....((((	chr6:86352546-86352826(-)$1	1	56	113	56.0000

#PSSM
A : 0.50	U : 0.25	a : 0.25	
G : 0.75	g : 0.25	
G : 0.75	u : 0.25	
G : 0.50	U : 0.25	g : 0.25	
G : 0.75	a : 0.25	
G : 0.75	g : 0.25	
A : 0.50	U : 0.25	u : 0.25	
G : 0.75	g : 0.25	
G : 0.50	U : 0.25	a : 0.25	
G : 0.75	a : 0.25	
G : 0.75	g : 0.25	
C : 0.75	c : 0.25	
C : 0.50	G : 0.25	g : 0.25	
U : 0.50	G : 0.25	g : 0.25	
C : 0.75	a : 0.25	
U : 0.75	C : 0.25	
U : 0.50	G : 0.50	
G : 0.75	C : 0.25	
G : 1.00	
C : 0.50	U : 0.25	G : 0.25	
G : 0.50	A : 0.25	U : 0.25	
U : 0.50	A : 0.25	a : 0.25	
C : 0.50	A : 0.25	g : 0.25	
G : 0.50	C : 0.25	g : 0.25	
G : 0.50	C : 0.25	g : 0.25	
C : 0.50	A : 0.25	a : 0.25	
G : 0.75	g : 0.25	
G : 0.75	g : 0.25	
G : 0.50	U : 0.25	g : 0.25	
G : 0.75	g : 0.25	
C : 0.50	A : 0.25	a : 0.25	
G : 0.50	C : 0.25	g : 0.25	
G : 0.75	g : 0.25	
G : 0.75	g : 0.25	
G : 0.50	A : 0.25	a : 0.25	
C : 0.50	A : 0.25	a : 0.25	
G : 0.75	g : 0.25	
G : 0.50	A : 0.25	g : 0.25	
G : 0.75	g : 0.25	
G : 0.75	a : 0.25	
G : 0.50	C : 0.25	a : 0.25	
U : 0.50	C : 0.25	g : 0.25	
C : 0.25	G : 0.25	A : 0.25	g : 0.25	
C : 0.25	G : 0.25	A : 0.25	g : 0.25	
C : 0.50	G : 0.25	a : 0.25	
G : 0.75	a : 0.25	
G : 0.50	A : 0.25	g : 0.25	
G : 0.50	U : 0.25	g : 0.25	
G : 0.75	g : 0.25	
G : 0.25	A : 0.25	U : 0.25	a : 0.25	
G : 0.50	C : 0.25	a : 0.25	
G : 0.50	C : 0.25	g : 0.25	
G : 0.25	A : 0.25	C : 0.25	g : 0.25	
C : 0.50	U : 0.25	g : 0.25	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.25	G : 0.25	

#score	264.0
#seq	4
#width	57
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_UTR_m1_run2.nuc.txt

#NT
GCCUCCU	chr9:34369838-34370074(-)$1	236	182	189	13.1830
CCCUCCC	chr2:86254145-86254423(-)$1	278	87	94	13.6760
gccugcc	chr11:61117383-61117674(-)$1	291	9	16	13.0422
GCCUCCU	chr14:73686809-73687068(+)$1	259	64	71	13.1830
GGCUCCC	chr17:37075072-37075336(+)$1	264	130	137	12.9014
GCCACCC	chr7:100781192-100781402(+)$1	210	58	65	12.6901
GCCUGCC	chr17:26725796-26726076(-)$1	280	82	89	13.0422
ACCUCCC	chr20:61599604-61599863(+)$1	259	196	203	13.3239
GCCUCUC	chr2:219140033-219140274(-)$1	241	221	228	12.7605
GCCUCCC	chr16:68294186-68294479(+)$1	293	139	146	17.0563
GCCUCCC	chr10:102308737-102308994(+)$1	257	135	142	17.0563
CCCUCCC	chr22:42303045-42303339(+)$1	294	60	67	13.6760
GCCUCCC	chr4:1809246-1809505(+)$1	259	224	231	17.0563
CCCUCCC	chr11:838605-838894(+)$1	289	12	19	13.6760
CCCUCCC	chr1:9790325-9790576(-)$1	251	124	131	13.6760
GCCUCCA	chr16:30435204-30435452(-)$1	248	5	12	13.0422
GCCUCAC	chr21:46935059-46935303(-)$1	244	1	8	12.6901
GCCUCGC	chr15:75311876-75312158(+)$1	282	7	14	12.6901
CCCUCCC	chr7:938126-938422(-)$1	296	115	122	13.6760
GCCUCGC	chr16:74486376-74486611(-)$1	235	80	87	12.6901
CCCUCCC	chr19:47112478-47112719(+)$1	241	204	211	13.6760
GCCUCCC	chr2:220036934-220037319(-)$1	385	286	293	17.0563
GCCUCCU	chr19:3209047-3209309(+)$1	262	229	236	13.1830
GCCUUCC	chr22:50713876-50714198(-)$1	322	9	16	13.1126
ACCUCCC	chr17:46138259-46138550(+)$1	291	157	164	13.3239
GCCUGCC	chr6:109307742-109308105(-)$1	363	232	239	13.0422
UCCUCCC	chr20:4837338-4837592(-)$1	254	236	243	13.1126
CCCUCCC	chr19:11033680-11033954(-)$1	274	41	48	13.6760
GCUUCCC	chr1:15756186-15756421(+)$1	235	163	170	12.3380
GCCUCCC	chr9:33112304-33112576(-)$1	272	145	152	17.0563
GCCUCCC	chr10:81072780-81073082(+)$1	302	124	131	17.0563
GUCUCCC	chr19:48885894-48886107(-)$1	213	68	75	12.6197
GCCUCAC	chr9:34369627-34369871(-)$1	244	47	54	12.6901
GCCUCCA	chr16:87865452-87865681(-)$1	229	42	49	13.0422
GCCUCCA	chr3:186794016-186794285(+)$1	269	77	84	13.0422
GCCUCCC	chr3:127790105-127790351(+)$1	246	123	130	17.0563
GCCUCCC	chr16:68332250-68332618(+)$1	368	207	214	17.0563
gccuccc	chr1:3697034-3697311(-)$1	277	45	52	17.0563
GCCUCCC	chr9:95883923-95884245(-)$1	322	166	173	17.0563
GCCUUCC	chr15:90378258-90378545(-)$1	287	54	61	13.1126
ACCUCCC	chr11:769861-770157(-)$1	296	142	149	13.3239
ggcuccc	chr9:139099926-139100155(-)$1	229	7	14	12.9014
GCCUUCC	chr1:24121224-24121488(+)$1	264	156	163	13.1126
GCCCCCC	chr9:140342688-140342947(-)$1	259	136	143	12.6197
GCCUCCC	chr3:127790082-127790305(+)$1	223	146	153	17.0563
GCCUCCC	chr7:149577564-149577845(+)$1	281	89	96	17.0563
GCCUCCU	chr15:78289249-78289530(-)$1	281	7	14	13.1830
GGCUCCC	chr22:38616436-38616697(-)$1	261	45	52	12.9014
GCCCCCC	chr15:74006455-74006711(+)$1	256	163	170	12.6197
GCUUCCC	chr4:6698669-6698981(+)$1	312	144	151	12.3380
GGCUCCC	chr15:74702096-74702362(-)$1	266	138	145	12.9014
GCCUCCC	chr1:35899516-35899775(-)$1	259	239	246	17.0563
GCCUCUC	chr17:41845933-41846218(-)$1	285	250	257	12.7605
ACCUCCC	chr22:35743217-35743493(+)$1	276	44	51	13.3239
GCCUCCC	chr19:3208316-3208533(+)$1	217	73	80	17.0563
GACUCCC	chr16:314974-315377(+)$1	403	134	141	12.6197
GCCGCCC	chr22:24810569-24810837(+)$1	268	36	43	12.5492
CCCUCCC	chr19:541489-541708(+)$1	219	193	200	13.6760
GCCUCUC	chr8:143817797-143818052(+)$1	255	72	79	12.7605
GCCUACC	chr17:26725876-26726159(-)$1	283	49	56	12.8309
GCCUCCU	chr10:102122239-102122448(+)$1	209	81	88	13.1830
GCCUUCC	chr9:132899545-132899782(+)$1	237	203	210	13.1126
CCCUCCC	chr4:79462440-79462791(+)$1	351	224	231	13.6760
GCCUCCU	chr1:35900009-35900359(-)$1	350	106	113	13.1830
GCCUCCA	chr2:20401274-20401568(-)$1	294	131	138	13.0422
GCCACCC	chr11:869095-869391(-)$1	296	5	12	12.6901
gccugcc	chr11:118965209-118965485(-)$1	276	17	24	13.0422
GCCUUCC	chr16:29869862-29870127(-)$1	265	35	42	13.1126
GCCACCC	chr19:1925484-1925731(+)$1	247	133	140	12.6901
GGCUCCC	chr19:48885986-48886253(-)$1	267	64	71	12.9014

#otherMatches

#Struct PSSM
blllbbb	chr4:1815113-1815414(-)$1	301	249	256	17.0563
ggggggg	chr9:34369838-34370074(-)$1	236	182	189	13.1830
dd]bb]d	chr2:86254145-86254423(-)$1	278	87	94	13.6760
dd!!ccc	chr11:61117383-61117674(-)$1	291	9	16	13.0422
ppppppd	chr14:73686809-73687068(+)$1	259	64	71	13.1830
EEEEEEE	chr17:37075072-37075336(+)$1	264	130	137	12.9014
bbggggg	chr7:100781192-100781402(+)$1	210	58	65	12.6901
JJJ{BB:	chr17:26725796-26726076(-)$1	280	82	89	13.0422
eee"""g	chr20:61599604-61599863(+)$1	259	196	203	13.3239
fffnnnn	chr2:219140033-219140274(-)$1	241	221	228	12.7605
dd:dddd	chr16:68294186-68294479(+)$1	293	139	146	17.0563
c[a####	chr10:102308737-102308994(+)$1	257	135	142	17.0563
:::::::	chr22:42303045-42303339(+)$1	294	60	67	13.6760
ccc4444	chr4:1809246-1809505(+)$1	259	224	231	17.0563
dd:::::	chr11:838605-838894(+)$1	289	12	19	13.6760
:ccc[a[	chr1:9790325-9790576(-)$1	251	124	131	13.6760
ee!!bb!	chr16:30435204-30435452(-)$1	248	5	12	13.0422
ddd====	chr21:46935059-46935303(-)$1	244	1	8	12.6901
F{CCCBB	chr15:75311876-75312158(+)$1	282	7	14	12.6901
eeessss	chr7:938126-938422(-)$1	296	115	122	13.6760
ccfffff	chr16:74486376-74486611(-)$1	235	80	87	12.6901
::hhhhh	chr19:47112478-47112719(+)$1	241	204	211	13.6760
HHHH}GG	chr2:220036934-220037319(-)$1	385	286	293	17.0563
eecccnn	chr19:3209047-3209309(+)$1	262	229	236	13.1830
ccnnnnn	chr22:50713876-50714198(-)$1	322	9	16	13.1126
^^^^^^^	chr17:46138259-46138550(+)$1	291	157	164	13.3239
dda[ddd	chr6:109307742-109308105(-)$1	363	232	239	13.0422
cccpppp	chr20:4837338-4837592(-)$1	254	236	243	13.1126
meeeee4	chr19:11033680-11033954(-)$1	274	41	48	13.6760
cccDDDD	chr1:15756186-15756421(+)$1	235	163	170	12.3380
dddmmmm	chr9:33112304-33112576(-)$1	272	145	152	17.0563
bbbb[bb	chr10:81072780-81073082(+)$1	302	124	131	17.0563
hhhhhhh	chr19:48885894-48886107(-)$1	213	68	75	12.6197
ccc[fff	chr9:34369627-34369871(-)$1	244	47	54	12.6901
HHHHHHH	chr16:87865452-87865681(-)$1	229	42	49	13.0422
ccc]bb7	chr3:186794016-186794285(+)$1	269	77	84	13.0422
ii::eee	chr3:127790105-127790351(+)$1	246	123	130	17.0563
eee[bba	chr16:68332250-68332618(+)$1	368	207	214	17.0563
ccceeee	chr1:3697034-3697311(-)$1	277	45	52	17.0563
qqqqqqq	chr9:95883923-95884245(-)$1	322	166	173	17.0563
b[fffff	chr15:90378258-90378545(-)$1	287	54	61	13.1126
dd!!add	chr11:769861-770157(-)$1	296	142	149	13.3239
GGGGG::	chr9:139099926-139100155(-)$1	229	7	14	12.9014
gqqqqqq	chr1:24121224-24121488(+)$1	264	156	163	13.1126
nniiiii	chr9:140342688-140342947(-)$1	259	136	143	12.6197
DDD:eee	chr3:127790082-127790305(+)$1	223	146	153	17.0563
JJ{BBCC	chr7:149577564-149577845(+)$1	281	89	96	17.0563
eeecccm	chr15:78289249-78289530(-)$1	281	7	14	13.1830
iiiii:B	chr22:38616436-38616697(-)$1	261	45	52	12.9014
=====##	chr15:74006455-74006711(+)$1	256	163	170	12.6197
eeee]cc	chr4:6698669-6698981(+)$1	312	144	151	12.3380
JJJJJJJ	chr15:74702096-74702362(-)$1	266	138	145	12.9014
GGGGGGY	chr1:35899516-35899775(-)$1	259	239	246	17.0563
BBAJJJJ	chr17:41845933-41846218(-)$1	285	250	257	12.7605
doooooo	chr22:35743217-35743493(+)$1	276	44	51	13.3239
fff5555	chr19:3208316-3208533(+)$1	217	73	80	17.0563
eeeee]e	chr16:314974-315377(+)$1	403	134	141	12.6197
a!!eeee	chr22:24810569-24810837(+)$1	268	36	43	12.5492
}DDDDdd	chr19:541489-541708(+)$1	219	193	200	13.6760
GGGGGff	chr8:143817797-143818052(+)$1	255	72	79	12.7605
DDDLLLE	chr17:26725876-26726159(-)$1	283	49	56	12.8309
=:::::=	chr10:102122239-102122448(+)$1	209	81	88	13.1830
bbttttt	chr9:132899545-132899782(+)$1	237	203	210	13.1126
oooobb4	chr4:79462440-79462791(+)$1	351	224	231	13.6760
ffff:::	chr1:35900009-35900359(-)$1	350	106	113	13.1830
ddddppp	chr2:20401274-20401568(-)$1	294	131	138	13.0422
ccccooo	chr11:869095-869391(-)$1	296	5	12	12.6901
{CCC:::	chr11:118965209-118965485(-)$1	276	17	24	13.0422
CIIIIII	chr16:29869862-29870127(-)$1	265	35	42	13.1126
bccc:::	chr19:1925484-1925731(+)$1	247	133	140	12.6901
bb22a]c	chr19:48885986-48886253(-)$1	267	64	71	12.9014

#DB
(...)))	chr4:1815113-1815414(-)$1	1	249	256	17.0563
)))))))	chr9:34369838-34370074(-)$1	1	182	189	13.1830
)).)).)	chr2:86254145-86254423(-)$1	1	87	94	13.6760
((..(((	chr11:61117383-61117674(-)$1	1	9	16	13.0422
......)	chr14:73686809-73687068(+)$1	1	64	71	13.1830
(((((((	chr17:37075072-37075336(+)$1	1	130	137	12.9014
(((((((	chr7:100781192-100781402(+)$1	1	58	65	12.6901
(((.((.	chr17:26725796-26726076(-)$1	1	82	89	13.0422
(((...(	chr20:61599604-61599863(+)$1	1	196	203	13.3239
(((....	chr2:219140033-219140274(-)$1	1	221	228	12.7605
)).((((	chr16:68294186-68294479(+)$1	1	139	146	17.0563
(.(....	chr10:102308737-102308994(+)$1	1	135	142	17.0563
.......	chr22:42303045-42303339(+)$1	1	60	67	13.6760
)))....	chr4:1809246-1809505(+)$1	1	224	231	17.0563
)).....	chr11:838605-838894(+)$1	1	12	19	13.6760
.(((.(.	chr1:9790325-9790576(-)$1	1	124	131	13.6760
((..((.	chr16:30435204-30435452(-)$1	1	5	12	13.0422
(((((((	chr21:46935059-46935303(-)$1	1	1	8	12.6901
(.(((((	chr15:75311876-75312158(+)$1	1	7	14	12.6901
(((....	chr7:938126-938422(-)$1	1	115	122	13.6760
(((((((	chr16:74486376-74486611(-)$1	1	80	87	12.6901
..(((((	chr19:47112478-47112719(+)$1	1	204	211	13.6760
)))).))	chr2:220036934-220037319(-)$1	1	286	293	17.0563
))(((..	chr19:3209047-3209309(+)$1	1	229	236	13.1830
((.....	chr22:50713876-50714198(-)$1	1	9	16	13.1126
.......	chr17:46138259-46138550(+)$1	1	157	164	13.3239
(((.(((	chr6:109307742-109308105(-)$1	1	232	239	13.0422
(((....	chr20:4837338-4837592(-)$1	1	236	243	13.1126
.))))).	chr19:11033680-11033954(-)$1	1	41	48	13.6760
)))))))	chr1:15756186-15756421(+)$1	1	163	170	12.3380
(((....	chr9:33112304-33112576(-)$1	1	145	152	17.0563
((((.((	chr10:81072780-81073082(+)$1	1	124	131	17.0563
)))))))	chr19:48885894-48886107(-)$1	1	68	75	12.6197
(((.(((	chr9:34369627-34369871(-)$1	1	47	54	12.6901
(((((((	chr16:87865452-87865681(-)$1	1	42	49	13.0422
))).)).	chr3:186794016-186794285(+)$1	1	77	84	13.0422
))..(((	chr3:127790105-127790351(+)$1	1	123	130	17.0563
(((.(((	chr16:68332250-68332618(+)$1	1	207	214	17.0563
(((((((	chr1:3697034-3697311(-)$1	1	45	52	17.0563
.......	chr9:95883923-95884245(-)$1	1	166	173	17.0563
(.(((((	chr15:90378258-90378545(-)$1	1	54	61	13.1126
((..(((	chr11:769861-770157(-)$1	1	142	149	13.3239
(((((..	chr9:139099926-139100155(-)$1	1	7	14	12.9014
(......	chr1:24121224-24121488(+)$1	1	156	163	13.1126
..)))))	chr9:140342688-140342947(-)$1	1	136	143	12.6197
))).(((	chr3:127790082-127790305(+)$1	1	146	153	17.0563
((.((((	chr7:149577564-149577845(+)$1	1	89	96	17.0563
((((((.	chr15:78289249-78289530(-)$1	1	7	14	13.1830
))))).(	chr22:38616436-38616697(-)$1	1	45	52	12.9014
(((((..	chr15:74006455-74006711(+)$1	1	163	170	12.6197
)))).))	chr4:6698669-6698981(+)$1	1	144	151	12.3380
(((((((	chr15:74702096-74702362(-)$1	1	138	145	12.9014
)))))).	chr1:35899516-35899775(-)$1	1	239	246	17.0563
)))))))	chr17:41845933-41846218(-)$1	1	250	257	12.7605
(......	chr22:35743217-35743493(+)$1	1	44	51	13.3239
)))....	chr19:3208316-3208533(+)$1	1	73	80	17.0563
))))).)	chr16:314974-315377(+)$1	1	134	141	12.6197
(..((((	chr22:24810569-24810837(+)$1	1	36	43	12.5492
.))))((	chr19:541489-541708(+)$1	1	193	200	13.6760
(((((((	chr8:143817797-143818052(+)$1	1	72	79	12.7605
(((...(	chr17:26725876-26726159(-)$1	1	49	56	12.8309
).....(	chr10:102122239-102122448(+)$1	1	81	88	13.1830
((.....	chr9:132899545-132899782(+)$1	1	203	210	13.1126
....)).	chr4:79462440-79462791(+)$1	1	224	231	13.6760
))))...	chr1:35900009-35900359(-)$1	1	106	113	13.1830
((((...	chr2:20401274-20401568(-)$1	1	131	138	13.0422
((((...	chr11:869095-869391(-)$1	1	5	12	12.6901
.(((...	chr11:118965209-118965485(-)$1	1	17	24	13.0422
(((((((	chr16:29869862-29870127(-)$1	1	35	42	13.1126
))))...	chr19:1925484-1925731(+)$1	1	133	140	12.6901
))..).)	chr19:48885986-48886253(-)$1	1	64	71	12.9014

#PSSM
G : 0.74	C : 0.12	g : 0.05	A : 0.05	U : 0.01	
C : 0.85	G : 0.05	c : 0.04	U : 0.01	g : 0.01	A : 0.01	
C : 0.91	c : 0.05	U : 0.02	
U : 0.85	u : 0.05	A : 0.04	C : 0.02	G : 0.01	
C : 0.83	U : 0.07	g : 0.02	G : 0.02	c : 0.02	A : 0.01	
C : 0.84	c : 0.05	U : 0.04	A : 0.02	G : 0.02	
C : 0.80	U : 0.08	c : 0.05	A : 0.05	

#score	986.4929577464786
#seq	71
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_transcript_m3_run1.nuc.txt

#NT
ucauugcugucaucaucaccauucaccaucaaugucgucaucaccaucaucaucacuaucaucauuaucaccaucaucaccaucaccaucaucauuacugucaucaucaccauucaccgucacuaucaucacugucauuaucaccaucaucaucaccaccaccaucaccaucaucacugucauccccauccucaucaucaucaccaucacugucaucaucaucaccaucaccaccauugccaucaccaucaccaucauuaucacugucaucaucaccuuucu	chr2:10452499-10452817(+)$1	318	6	288	371.0000

#otherMatches

#Struct PSSM
eeeemmmmeeeeedddd::::FFFFFF{BB{CCCDDDDLLLCCC{EEEEE::dddd[ccc!!ccccccnnnnnccc]ccc]ccc]dddd::::ffffff[a[bblllbb]a]ffffff:::EEEEECCCZZZDDDDYYCCC}BBYYFFFFFF::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::	chr17:80107060-80107359(-)$1	299	16	298	371.0000
[eeeee[bbzzzzzzzzzzzzzzzzzbb]eeeee]bb:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::	chr2:10452499-10452817(+)$1	318	6	288	371.0000

#DB
((((....)))))))))....((((((.((.(((((((...(((.(((((..((((.(((..((((((.....))).))).))).))))....((((((.(.((...)).).))))))...))))))))...))))..))).))..))))))..................................................................................................................................	chr17:80107060-80107359(-)$1	1	16	298	371.0000
.(((((.((.................)).))))).)).....................................................................................................................................................................................................................................................	chr2:10452499-10452817(+)$1	1	6	288	371.0000

#PSSM
G : 0.50	u : 0.50	
G : 0.50	c : 0.50	
C : 0.50	a : 0.50	
A : 0.50	u : 0.50	
G : 0.50	u : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	u : 0.50	
U : 0.50	g : 0.50	
G : 0.50	u : 0.50	
U : 0.50	c : 0.50	
C : 0.50	a : 0.50	
U : 0.50	u : 0.50	
C : 0.50	c : 0.50	
C : 0.50	a : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
A : 0.50	u : 0.50	
G : 0.50	u : 0.50	
G : 0.50	c : 0.50	
U : 0.50	a : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	u : 0.50	
G : 0.50	c : 0.50	
C : 0.50	a : 0.50	
U : 0.50	a : 0.50	
G : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	u : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
U : 0.50	u : 0.50	
C : 0.50	c : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	a : 0.50	
A : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	u : 0.50	
A : 0.50	c : 0.50	
G : 0.50	a : 0.50	
A : 0.50	u : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	u : 0.50	
C : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	c : 0.50	
A : 0.50	u : 0.50	
G : 0.50	a : 0.50	
C : 0.50	u : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
A : 0.50	u : 0.50	
C : 0.50	c : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
C : 0.50	u : 0.50	
C : 0.50	a : 0.50	
U : 0.50	u : 0.50	
A : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	c : 0.50	
A : 0.50	c : 0.50	
A : 0.50	a : 0.50	
A : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	u : 0.50	
A : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	u : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	u : 0.50	
C : 0.50	c : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
U : 0.50	c : 0.50	
A : 0.50	a : 0.50	
U : 0.50	u : 0.50	
G : 0.50	u : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	u : 0.50	
G : 0.50	c : 0.50	
U : 0.50	a : 0.50	
G : 0.50	u : 0.50	
U : 0.50	c : 0.50	
U : 0.50	a : 0.50	
U : 0.50	u : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	a : 0.50	
A : 0.50	u : 0.50	
G : 0.50	u : 0.50	
U : 0.50	c : 0.50	
c : 0.50	a : 0.50	
a : 0.50	c : 0.50	
u : 0.50	c : 0.50	
c : 0.50	g : 0.50	
c : 0.50	u : 0.50	
a : 0.50	c : 0.50	
u : 0.50	a : 0.50	
c : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
u : 1.00	
u : 0.50	c : 0.50	
c : 0.50	a : 0.50	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 0.50	a : 0.50	
c : 1.00	
a : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
c : 1.00	
a : 1.00	
u : 1.00	
c : 0.50	u : 0.50	
c : 0.50	a : 0.50	
a : 0.50	u : 0.50	
c : 1.00	
c : 0.50	a : 0.50	
c : 1.00	
a : 0.50	c : 0.50	
c : 0.50	a : 0.50	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
a : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
u : 0.50	a : 0.50	
a : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 0.50	a : 0.50	
c : 1.00	
a : 0.50	c : 0.50	
u : 0.50	a : 0.50	
c : 1.00	
c : 1.00	
a : 1.00	
u : 0.50	c : 0.50	
c : 1.00	
u : 0.50	a : 0.50	
a : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 0.50	a : 0.50	
c : 1.00	
a : 0.50	c : 0.50	
a : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
a : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
c : 0.50	a : 0.50	
a : 0.50	c : 0.50	
u : 1.00	
c : 0.50	g : 0.50	
c : 0.50	u : 0.50	
a : 0.50	c : 0.50	
u : 0.50	a : 0.50	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
a : 0.50	c : 0.50	
u : 0.50	c : 0.50	
c : 1.00	
c : 0.50	a : 0.50	
a : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
a : 0.50	c : 0.50	
u : 0.50	a : 0.50	
u : 1.00	
c : 1.00	
a : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
c : 0.50	a : 0.50	
a : 0.50	u : 0.50	
c : 1.00	
c : 0.50	a : 0.50	
c : 1.00	
c : 1.00	
c : 0.50	a : 0.50	
c : 0.50	u : 0.50	
c : 1.00	
c : 0.50	a : 0.50	
a : 0.50	c : 0.50	
u : 1.00	
c : 0.50	g : 0.50	
c : 0.50	u : 0.50	
a : 0.50	c : 0.50	
u : 0.50	a : 0.50	
c : 0.50	u : 0.50	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 0.50	a : 0.50	
a : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 0.50	a : 0.50	
c : 1.00	
a : 0.50	c : 0.50	
u : 0.50	a : 0.50	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
a : 1.00	
c : 1.00	
c : 1.00	
c : 0.50	a : 0.50	
a : 0.50	c : 0.50	
u : 0.50	c : 0.50	
c : 0.50	a : 0.50	
u : 1.00	
a : 0.50	u : 0.50	
c : 0.50	g : 0.50	
c : 1.00	
c : 1.00	
a : 1.00	
c : 0.50	u : 0.50	
c : 1.00	
c : 0.50	a : 0.50	
a : 0.50	c : 0.50	
c : 1.00	
c : 0.50	a : 0.50	
c : 0.50	u : 0.50	
a : 0.50	c : 0.50	
u : 0.50	a : 0.50	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
u : 0.50	c : 0.50	
c : 0.50	a : 0.50	
a : 0.50	u : 0.50	
u : 1.00	
c : 0.50	a : 0.50	
c : 0.50	u : 0.50	
a : 0.50	c : 0.50	
c : 0.50	a : 0.50	
c : 1.00	
c : 0.50	u : 0.50	
a : 0.50	g : 0.50	
c : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 0.50	a : 0.50	
a : 0.50	u : 0.50	
u : 0.50	c : 0.50	
c : 0.50	a : 0.50	
c : 0.50	u : 0.50	
a : 0.50	c : 0.50	
u : 0.50	a : 0.50	
c : 1.00	
c : 1.00	
g : 0.50	u : 0.50	
c : 0.50	u : 0.50	
c : 0.50	u : 0.50	
a : 0.50	c : 0.50	
u : 1.00	

#score	742.0
#seq	2
#width	282
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_UTR_m2_run1.nuc.txt

#NT
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152578-2152782(-)$1	204	16	56	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152564-2152766(-)$1	202	0	40	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152582-2152784(-)$1	202	18	58	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152609-2152815(-)$1	206	49	89	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152584-2152792(-)$1	208	26	66	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152592-2152805(-)$1	213	39	79	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152698-2152906(-)$1	208	140	180	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152639-2152844(-)$1	205	78	118	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152680-2152890(-)$1	210	124	164	115.7575
gcacacgcacacacagcacacacaugaacacagcacacag	chr11:2152748-2152977(-)$1	229	79	119	89.2424
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152634-2152839(-)$1	205	73	113	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152723-2152937(-)$1	214	171	211	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152605-2152809(-)$1	204	43	83	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152659-2152863(-)$1	204	97	137	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152718-2152923(-)$1	205	157	197	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152627-2152829(-)$1	202	63	103	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152713-2152918(-)$1	205	152	192	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152566-2152768(-)$1	202	2	42	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152622-2152827(-)$1	205	61	101	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152671-2152875(-)$1	204	109	149	115.7575
gcacacgcacacacagcacacacaugaacacagcacacag	chr11:2152737-2152941(-)$1	204	43	83	89.2424
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152695-2152898(-)$1	203	132	172	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152663-2152870(-)$1	207	104	144	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152576-2152778(-)$1	202	12	52	115.7575
gcacacgcacacacagcacacacaugaacacagcacacag	chr11:2152784-2153016(-)$1	232	118	158	89.2424
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152616-2152819(-)$1	203	53	93	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152629-2152834(-)$1	205	68	108	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152652-2152858(-)$1	206	92	132	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152619-2152822(-)$1	203	56	96	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152648-2152852(-)$1	204	86	126	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152568-2152776(-)$1	208	10	50	115.7575
acacacUCAUGCGCAGCACAUACAUGAACACAGCUCACAG	chr11:2152691-2152895(-)$1	204	129	169	115.7575

#otherMatches

#Struct PSSM
bbmmmmbb:::::::BBLLLA{EEEEE:::::bbnnnnnb	chr11:2152741-2152948(-)$1	207	50	90	89.2424
::::CCCLLLBBOOOOOOFFFFFF{BB:::::ccclllcc	chr11:2152578-2152782(-)$1	204	16	56	115.7575
::::CCCLLLBBOOOOOOFFFFFF{BB:::::ccclllcc	chr11:2152564-2152766(-)$1	202	0	40	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152582-2152784(-)$1	202	18	58	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152609-2152815(-)$1	206	49	89	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152584-2152792(-)$1	208	26	66	115.7575
bqqqqqqqqbb]bb::::FFFFFF{BB:::::ccclllcc	chr11:2152592-2152805(-)$1	213	39	79	115.7575
::::::eeeeettttttttttteeeee:::::CCC~~~~C	chr11:2152698-2152906(-)$1	208	140	180	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152639-2152844(-)$1	205	78	118	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152680-2152890(-)$1	210	124	164	115.7575
bbmmmmbb:::::::BBNNNNNDDDD::::::bbnnnnnb	chr11:2152748-2152977(-)$1	229	79	119	89.2424
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152634-2152839(-)$1	205	73	113	115.7575
::::::eeeeettttttttttteeeee:::::CCC:::::	chr11:2152723-2152937(-)$1	214	171	211	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152605-2152809(-)$1	204	43	83	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152659-2152863(-)$1	204	97	137	115.7575
::::::EEEEE}AYYBB:::::::::::::::ccclllcc	chr11:2152718-2152923(-)$1	205	157	197	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152627-2152829(-)$1	202	63	103	115.7575
::::::EEEEE}AYYBB:::::::::::::::ccclllcc	chr11:2152713-2152918(-)$1	205	152	192	115.7575
::::CCCLLLBBOOOOOOFFFFFF{BB:::::ccclllcc	chr11:2152566-2152768(-)$1	202	2	42	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152622-2152827(-)$1	205	61	101	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152671-2152875(-)$1	204	109	149	115.7575
bbmmmmbb:::::::BBLLLA{EEEEE:::::bbnnnnnb	chr11:2152737-2152941(-)$1	204	43	83	89.2424
::::::EEEEE}AYYBB:::::::::::::::ccclllcc	chr11:2152695-2152898(-)$1	203	132	172	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152663-2152870(-)$1	207	104	144	115.7575
::::CCCLLLBBOOOOOOFFFFFF{BB:::::ccclllcc	chr11:2152576-2152778(-)$1	202	12	52	115.7575
bbmmmmbb:::::::BBNNNNNDDDD::::::bbnnnnnb	chr11:2152784-2153016(-)$1	232	118	158	89.2424
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152616-2152819(-)$1	203	53	93	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152629-2152834(-)$1	205	68	108	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152652-2152858(-)$1	206	92	132	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152619-2152822(-)$1	203	56	96	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152648-2152852(-)$1	204	86	126	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152568-2152776(-)$1	208	10	50	115.7575
::::::eeeeettttttttttteeeee:::::ccclllcc	chr11:2152691-2152895(-)$1	204	129	169	115.7575

#DB
((....)).......((...(.(((((.....((.....)	chr11:2152741-2152948(-)$1	1	50	90	89.2424
....(((...((......((((((.((.....(((...))	chr11:2152578-2152782(-)$1	1	16	56	115.7575
....(((...((......((((((.((.....(((...))	chr11:2152564-2152766(-)$1	1	0	40	115.7575
......(((((...........))))).....(((...))	chr11:2152582-2152784(-)$1	1	18	58	115.7575
......(((((...........))))).....(((...))	chr11:2152609-2152815(-)$1	1	49	89	115.7575
......(((((...........))))).....(((...))	chr11:2152584-2152792(-)$1	1	26	66	115.7575
(........)).))....((((((.((.....(((...))	chr11:2152592-2152805(-)$1	1	39	79	115.7575
......(((((...........))))).....)))....)	chr11:2152698-2152906(-)$1	1	140	180	115.7575
......(((((...........))))).....(((...))	chr11:2152639-2152844(-)$1	1	78	118	115.7575
......(((((...........))))).....(((...))	chr11:2152680-2152890(-)$1	1	124	164	115.7575
((....)).......((.....((((......((.....)	chr11:2152748-2152977(-)$1	1	79	119	89.2424
......(((((...........))))).....(((...))	chr11:2152634-2152839(-)$1	1	73	113	115.7575
......(((((...........))))).....))).....	chr11:2152723-2152937(-)$1	1	171	211	115.7575
......(((((...........))))).....(((...))	chr11:2152605-2152809(-)$1	1	43	83	115.7575
......(((((...........))))).....(((...))	chr11:2152659-2152863(-)$1	1	97	137	115.7575
......))))).)..))...............(((...))	chr11:2152718-2152923(-)$1	1	157	197	115.7575
......(((((...........))))).....(((...))	chr11:2152627-2152829(-)$1	1	63	103	115.7575
......))))).)..))...............(((...))	chr11:2152713-2152918(-)$1	1	152	192	115.7575
....(((...((......((((((.((.....(((...))	chr11:2152566-2152768(-)$1	1	2	42	115.7575
......(((((...........))))).....(((...))	chr11:2152622-2152827(-)$1	1	61	101	115.7575
......(((((...........))))).....(((...))	chr11:2152671-2152875(-)$1	1	109	149	115.7575
((....)).......((...(.(((((.....((.....)	chr11:2152737-2152941(-)$1	1	43	83	89.2424
......))))).)..))...............(((...))	chr11:2152695-2152898(-)$1	1	132	172	115.7575
......(((((...........))))).....(((...))	chr11:2152663-2152870(-)$1	1	104	144	115.7575
....(((...((......((((((.((.....(((...))	chr11:2152576-2152778(-)$1	1	12	52	115.7575
((....)).......((.....((((......((.....)	chr11:2152784-2153016(-)$1	1	118	158	89.2424
......(((((...........))))).....(((...))	chr11:2152616-2152819(-)$1	1	53	93	115.7575
......(((((...........))))).....(((...))	chr11:2152629-2152834(-)$1	1	68	108	115.7575
......(((((...........))))).....(((...))	chr11:2152652-2152858(-)$1	1	92	132	115.7575
......(((((...........))))).....(((...))	chr11:2152619-2152822(-)$1	1	56	96	115.7575
......(((((...........))))).....(((...))	chr11:2152648-2152852(-)$1	1	86	126	115.7575
......(((((...........))))).....(((...))	chr11:2152568-2152776(-)$1	1	10	50	115.7575
......(((((...........))))).....(((...))	chr11:2152691-2152895(-)$1	1	129	169	115.7575

#PSSM
a : 0.87	g : 0.12	
c : 0.99	
a : 0.99	
c : 0.99	
a : 0.99	
c : 0.99	
U : 0.87	g : 0.12	
C : 0.87	c : 0.12	
A : 0.87	a : 0.12	
U : 0.87	c : 0.12	
G : 0.87	a : 0.12	
C : 0.87	c : 0.12	
G : 0.87	a : 0.12	
C : 0.87	c : 0.12	
A : 0.87	a : 0.12	
G : 0.87	g : 0.12	
C : 0.87	c : 0.12	
A : 0.87	a : 0.12	
C : 0.87	c : 0.12	
A : 0.87	a : 0.12	
U : 0.87	c : 0.12	
A : 0.87	a : 0.12	
C : 0.87	c : 0.12	
A : 0.87	a : 0.12	
U : 0.87	u : 0.12	
G : 0.87	g : 0.12	
A : 0.87	a : 0.12	
A : 0.87	a : 0.12	
C : 0.87	c : 0.12	
A : 0.87	a : 0.12	
C : 0.87	c : 0.12	
A : 0.87	a : 0.12	
G : 0.87	g : 0.12	
C : 0.87	c : 0.12	
U : 0.87	a : 0.12	
C : 0.87	c : 0.12	
A : 0.87	a : 0.12	
C : 0.87	c : 0.12	
A : 0.87	a : 0.12	
G : 0.87	g : 0.12	

#score	3713.9393939393904
#seq	33
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_transcript_m2_run2.nuc.txt

#NT
CCCAG	chr12:123467251-123467534(+)$1	283	11	16	15.0000
CCCAG	chr9:117063878-117064093(+)$1	215	78	83	15.0000
CCCAG	chr17:7317999-7318240(+)$1	241	181	186	15.0000
CCCAG	chr1:46083063-46083345(+)$1	282	161	166	15.0000
CCCAG	chr16:1818218-1818444(+)$1	226	98	103	15.0000
CCCAG	chr16:28848184-28848447(+)$1	263	20	25	15.0000
CCCAG	chr3:184102704-184102936(+)$1	232	96	101	15.0000
CCCAG	chr3:49051487-49051745(+)$1	258	50	55	15.0000
CCCAG	chr1:22149302-22149578(-)$1	276	40	45	15.0000
CCCAG	chr8:144873288-144873569(-)$1	281	1	6	15.0000
CCCAG	chr1:234529337-234529620(-)$1	283	32	37	15.0000
CCCAG	chr15:34818688-34818903(-)$1	215	27	32	15.0000
CCCAG	chr5:1051071-1051344(-)$1	273	188	193	15.0000
CCCAG	chr11:75147905-75148150(-)$1	245	208	213	15.0000
CCCAG	chr2:220074500-220074777(-)$1	277	4	9	15.0000
CCCAG	chr17:79974828-79975076(+)$1	248	96	101	15.0000
CCCAG	chr1:205500626-205500946(+)$1	320	59	64	15.0000
CCCAG	chr1:227142486-227142801(+)$1	315	148	153	15.0000
cccag	chr2:45768425-45768726(-)$1	301	245	250	15.0000
cccag	chr8:144568407-144568685(-)$1	278	84	89	15.0000
CCCAG	chr15:91463437-91463783(+)$1	346	81	86	15.0000
CCCAG	chr16:88718612-88718992(-)$1	380	223	228	15.0000
CCCAG	chr17:40265461-40265724(-)$1	263	240	245	15.0000
cccag	chr3:169878637-169878888(-)$1	251	112	117	15.0000
cccag	chr7:73007767-73008030(-)$1	263	142	147	15.0000
CCCAG	chr9:117050635-117050852(+)$1	217	54	59	15.0000
CCCAG	chr12:112194354-112194688(+)$1	334	198	203	15.0000
CCCAG	chr3:184106618-184106848(+)$1	230	15	20	15.0000
CCCAG	chr6:26123612-26123832(-)$1	220	134	139	15.0000
CCCAG	chr11:404664-404964(+)$1	300	152	157	15.0000
CCCAG	chrX:48317054-48317328(-)$1	274	24	29	15.0000
CCCAG	chr9:117053091-117053297(+)$1	206	93	98	15.0000
CCCAG	chr4:17802202-17802512(-)$1	310	190	195	15.0000
CCCAG	chr17:7322797-7323046(+)$1	249	32	37	15.0000
CCCAG	chr2:42285332-42285615(+)$1	283	41	46	15.0000
CCCAG	chr1:17084031-17084253(-)$1	222	44	49	15.0000
cccag	chr17:79640449-79640749(+)$1	300	106	111	15.0000
CCCAG	chr7:100400332-100400642(-)$1	310	48	53	15.0000
CCCAG	chr1:900895-901152(+)$1	257	26	31	15.0000
CCCAG	chr17:64793764-64793983(+)$1	219	143	148	15.0000
CCCAG	chr3:9986258-9986512(+)$1	254	47	52	15.0000
CCCAG	chrX:48681606-48681849(+)$1	243	174	179	15.0000
CCCAG	chr21:46932284-46932515(+)$1	231	116	121	15.0000
CCCAG	chr8:41478969-41479381(+)$1	412	20	25	15.0000
CCCAG	chr17:64793733-64793964(+)$1	231	174	179	15.0000
CCCAG	chr17:79991713-79992040(+)$1	327	258	263	15.0000
CCCAG	chr1:226107790-226108160(-)$1	370	306	311	15.0000
CCCAG	chr22:30775291-30775625(-)$1	334	40	45	15.0000
CCCAG	chr20:44979018-44979258(-)$1	240	209	214	15.0000
CCCAG	chr16:68389433-68389717(+)$1	284	169	174	15.0000
cccag	chr16:30760705-30760996(+)$1	291	3	8	15.0000
CCCAG	chrX:70787746-70788003(+)$1	257	126	131	15.0000
CCCAG	chr17:64793828-64794103(+)$1	275	79	84	15.0000
CCCAG	chr17:73227824-73228101(+)$1	277	266	271	15.0000

#otherMatches

#Struct PSSM
fffff	chr14:24107595-24107799(+)$1	204	135	140	15.0000
EEEKK	chr12:123467251-123467534(+)$1	283	11	16	15.0000
eeeee	chr9:117063878-117064093(+)$1	215	78	83	15.0000
eeeFF	chr17:7317999-7318240(+)$1	241	181	186	15.0000
gggg]	chr1:46083063-46083345(+)$1	282	161	166	15.0000
e"""i	chr16:1818218-1818444(+)$1	226	98	103	15.0000
qqqqd	chr16:28848184-28848447(+)$1	263	20	25	15.0000
=====	chr3:184102704-184102936(+)$1	232	96	101	15.0000
ddd$$	chr3:49051487-49051745(+)$1	258	50	55	15.0000
qqqqq	chr1:22149302-22149578(-)$1	276	40	45	15.0000
hhhhh	chr8:144873288-144873569(-)$1	281	1	6	15.0000
eeee]	chr1:234529337-234529620(-)$1	283	32	37	15.0000
deeee	chr15:34818688-34818903(-)$1	215	27	32	15.0000
bmmmm	chr5:1051071-1051344(-)$1	273	188	193	15.0000
3ccc]	chr11:75147905-75148150(-)$1	245	208	213	15.0000
GGGGG	chr2:220074500-220074777(-)$1	277	4	9	15.0000
"ccc#	chr17:79974828-79975076(+)$1	248	96	101	15.0000
ddccc	chr1:205500626-205500946(+)$1	320	59	64	15.0000
fffff	chr1:227142486-227142801(+)$1	315	148	153	15.0000
fffff	chr2:45768425-45768726(-)$1	301	245	250	15.0000
ccc[a	chr8:144568407-144568685(-)$1	278	84	89	15.0000
=====	chr15:91463437-91463783(+)$1	346	81	86	15.0000
hhhh]	chr16:88718612-88718992(-)$1	380	223	228	15.0000
~DDDD	chr17:40265461-40265724(-)$1	263	240	245	15.0000
dddd2	chr3:169878637-169878888(-)$1	251	112	117	15.0000
ggggg	chr7:73007767-73008030(-)$1	263	142	147	15.0000
fff[c	chr9:117050635-117050852(+)$1	217	54	59	15.0000
ggggg	chr12:112194354-112194688(+)$1	334	198	203	15.0000
fffff	chr3:184106618-184106848(+)$1	230	15	20	15.0000
:::::	chr6:26123612-26123832(-)$1	220	134	139	15.0000
dddd2	chr11:404664-404964(+)$1	300	152	157	15.0000
ddd""	chrX:48317054-48317328(-)$1	274	24	29	15.0000
%%%bb	chr9:117053091-117053297(+)$1	206	93	98	15.0000
DDDD}	chr4:17802202-17802512(-)$1	310	190	195	15.0000
EQQQQ	chr17:7322797-7323046(+)$1	249	32	37	15.0000
eee[d	chr2:42285332-42285615(+)$1	283	41	46	15.0000
ceeee	chr1:17084031-17084253(-)$1	222	44	49	15.0000
gg"""	chr17:79640449-79640749(+)$1	300	106	111	15.0000
nnnbb	chr7:100400332-100400642(-)$1	310	48	53	15.0000
HHHHH	chr1:900895-901152(+)$1	257	26	31	15.0000
ppccc	chr17:64793764-64793983(+)$1	219	143	148	15.0000
FFFFF	chr3:9986258-9986512(+)$1	254	47	52	15.0000
IIIII	chrX:48681606-48681849(+)$1	243	174	179	15.0000
mmddd	chr21:46932284-46932515(+)$1	231	116	121	15.0000
CCCFF	chr8:41478969-41479381(+)$1	412	20	25	15.0000
bbFFF	chr17:64793733-64793964(+)$1	231	174	179	15.0000
==ooo	chr17:79991713-79992040(+)$1	327	258	263	15.0000
fffff	chr1:226107790-226108160(-)$1	370	306	311	15.0000
:bbmm	chr22:30775291-30775625(-)$1	334	40	45	15.0000
GGGGG	chr20:44979018-44979258(-)$1	240	209	214	15.0000
vvfff	chr16:68389433-68389717(+)$1	284	169	174	15.0000
ggggg	chr16:30760705-30760996(+)$1	291	3	8	15.0000
hhhhh	chrX:70787746-70788003(+)$1	257	126	131	15.0000
2dddd	chr17:64793828-64794103(+)$1	275	79	84	15.0000
CC}EE	chr17:73227824-73228101(+)$1	277	266	271	15.0000

#DB
)))))	chr14:24107595-24107799(+)$1	1	135	140	15.0000
(((..	chr12:123467251-123467534(+)$1	1	11	16	15.0000
)))))	chr9:117063878-117064093(+)$1	1	78	83	15.0000
)))))	chr17:7317999-7318240(+)$1	1	181	186	15.0000
)))).	chr1:46083063-46083345(+)$1	1	161	166	15.0000
(...(	chr16:1818218-1818444(+)$1	1	98	103	15.0000
....)	chr16:28848184-28848447(+)$1	1	20	25	15.0000
)))))	chr3:184102704-184102936(+)$1	1	96	101	15.0000
(((..	chr3:49051487-49051745(+)$1	1	50	55	15.0000
.....	chr1:22149302-22149578(-)$1	1	40	45	15.0000
(((((	chr8:144873288-144873569(-)$1	1	1	6	15.0000
)))).	chr1:234529337-234529620(-)$1	1	32	37	15.0000
(((((	chr15:34818688-34818903(-)$1	1	27	32	15.0000
(....	chr5:1051071-1051344(-)$1	1	188	193	15.0000
.))).	chr11:75147905-75148150(-)$1	1	208	213	15.0000
(((((	chr2:220074500-220074777(-)$1	1	4	9	15.0000
.(((.	chr17:79974828-79975076(+)$1	1	96	101	15.0000
(((((	chr1:205500626-205500946(+)$1	1	59	64	15.0000
)))))	chr1:227142486-227142801(+)$1	1	148	153	15.0000
(((((	chr2:45768425-45768726(-)$1	1	245	250	15.0000
(((.(	chr8:144568407-144568685(-)$1	1	84	89	15.0000
)))))	chr15:91463437-91463783(+)$1	1	81	86	15.0000
)))).	chr16:88718612-88718992(-)$1	1	223	228	15.0000
.))))	chr17:40265461-40265724(-)$1	1	240	245	15.0000
)))).	chr3:169878637-169878888(-)$1	1	112	117	15.0000
(((((	chr7:73007767-73008030(-)$1	1	142	147	15.0000
(((.(	chr9:117050635-117050852(+)$1	1	54	59	15.0000
)))))	chr12:112194354-112194688(+)$1	1	198	203	15.0000
(((((	chr3:184106618-184106848(+)$1	1	15	20	15.0000
.....	chr6:26123612-26123832(-)$1	1	134	139	15.0000
)))).	chr11:404664-404964(+)$1	1	152	157	15.0000
(((..	chrX:48317054-48317328(-)$1	1	24	29	15.0000
...((	chr9:117053091-117053297(+)$1	1	93	98	15.0000
)))).	chr4:17802202-17802512(-)$1	1	190	195	15.0000
(....	chr17:7322797-7323046(+)$1	1	32	37	15.0000
(((.(	chr2:42285332-42285615(+)$1	1	41	46	15.0000
)))))	chr1:17084031-17084253(-)$1	1	44	49	15.0000
((...	chr17:79640449-79640749(+)$1	1	106	111	15.0000
...))	chr7:100400332-100400642(-)$1	1	48	53	15.0000
(((((	chr1:900895-901152(+)$1	1	26	31	15.0000
..)))	chr17:64793764-64793983(+)$1	1	143	148	15.0000
(((((	chr3:9986258-9986512(+)$1	1	47	52	15.0000
)))))	chrX:48681606-48681849(+)$1	1	174	179	15.0000
..)))	chr21:46932284-46932515(+)$1	1	116	121	15.0000
(((((	chr8:41478969-41479381(+)$1	1	20	25	15.0000
)))))	chr17:64793733-64793964(+)$1	1	174	179	15.0000
((...	chr17:79991713-79992040(+)$1	1	258	263	15.0000
)))))	chr1:226107790-226108160(-)$1	1	306	311	15.0000
.((..	chr22:30775291-30775625(-)$1	1	40	45	15.0000
)))))	chr20:44979018-44979258(-)$1	1	209	214	15.0000
..)))	chr16:68389433-68389717(+)$1	1	169	174	15.0000
(((((	chr16:30760705-30760996(+)$1	1	3	8	15.0000
(((((	chrX:70787746-70788003(+)$1	1	126	131	15.0000
.))))	chr17:64793828-64794103(+)$1	1	79	84	15.0000
)).))	chr17:73227824-73228101(+)$1	1	266	271	15.0000

#PSSM
C : 0.87	c : 0.12	
C : 0.87	c : 0.12	
C : 0.87	c : 0.12	
A : 0.87	a : 0.12	
G : 0.87	g : 0.12	

#score	825.0000000000001
#seq	55
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_UTR_m1_run2.nuc.txt

#NT
GGG	chrX:77361945-77362174(+)$1	229	103	106	9.0000
GGG	chr7:26241709-26241988(+)$1	279	66	69	9.0000
GGG	chr1:182360308-182360566(-)$1	258	0	3	9.0000
GGG	chr17:48796911-48797138(+)$1	227	8	11	9.0000
GGG	chrX:109420060-109420339(+)$1	279	19	22	9.0000
GGG	chr21:44269443-44269692(-)$1	249	84	87	9.0000
GGG	chr1:20236004-20236247(+)$1	243	0	3	9.0000
GGG	chr12:121159746-121159994(+)$1	248	58	61	9.0000
GGG	chr4:1950032-1950296(+)$1	264	32	35	9.0000
GGG	chr1:20235811-20236057(+)$1	246	45	48	9.0000
GGG	chr16:89367033-89367317(-)$1	284	8	11	9.0000
GGG	chr19:49995090-49995318(+)$1	228	49	52	9.0000
GGG	chr1:247094924-247095211(-)$1	287	31	34	9.0000
GGG	chr20:23356993-23357236(-)$1	243	116	119	9.0000
GGG	chr19:57862846-57863114(+)$1	268	78	81	9.0000
GGG	chr19:54970695-54970939(+)$1	244	37	40	9.0000
GGG	chr1:155658238-155658505(-)$1	267	1	4	9.0000
GGG	chr8:145149889-145150126(+)$1	237	74	77	9.0000
ggg	chr21:30671631-30671847(+)$1	216	23	26	9.0000
GGG	chr16:1360062-1360335(+)$1	273	14	17	9.0000
GGG	chr2:11917324-11917624(+)$1	300	86	89	9.0000
GGG	chr17:29632205-29632464(+)$1	259	28	31	9.0000
ggg	chr6:2961138-2961424(-)$1	286	119	122	9.0000
GGG	chr4:152020799-152021059(+)$1	260	49	52	9.0000
ggg	chr8:145634449-145634682(-)$1	233	12	15	9.0000
GGG	chr2:201728898-201729171(-)$1	273	90	93	9.0000
ggg	chr8:102217243-102217522(-)$1	279	2	5	9.0000
GGG	chr19:8550626-8550907(+)$1	281	17	20	9.0000
GGG	chr1:21112548-21112806(-)$1	258	35	38	9.0000
GGG	chr1:247094827-247095124(-)$1	297	32	35	9.0000
GGG	chr10:129924316-129924597(-)$1	281	10	13	9.0000
GGG	chr1:11979704-11980027(-)$1	323	153	156	9.0000
ggg	chr16:89337988-89338244(-)$1	256	120	123	9.0000
ggg	chr16:2059503-2059750(-)$1	247	14	17	9.0000
GGG	chr5:137089641-137089900(-)$1	259	28	31	9.0000
GGG	chr12:77158274-77158551(+)$1	277	0	3	9.0000
GGG	chr16:23584982-23585251(+)$1	269	7	10	9.0000
GGG	chr22:20067749-20067984(+)$1	235	38	41	9.0000
GGG	chr14:23779151-23779454(+)$1	303	29	32	9.0000
GGG	chr11:940593-940835(+)$1	242	201	204	9.0000
GGG	chr5:177631575-177631849(+)$1	274	1	4	9.0000
GGG	chr19:13262789-13263038(+)$1	249	0	3	9.0000
GGG	chr2:131850726-131850994(-)$1	268	2	5	9.0000
GGG	chr19:59055724-59055964(+)$1	240	10	13	9.0000
ggg	chr22:20068100-20068340(+)$1	240	0	3	9.0000
GGG	chr6:170151701-170152074(+)$1	373	37	40	9.0000
GGG	chr19:54970269-54970518(+)$1	249	3	6	9.0000
GGG	chr1:22109427-22109685(-)$1	258	6	9	9.0000
GGG	chr6:2960082-2960357(-)$1	275	9	12	9.0000
GGG	chr14:53162117-53162392(-)$1	275	16	19	9.0000
GGG	chr19:54970615-54970866(+)$1	251	5	8	9.0000
GGG	chr4:1947208-1947473(+)$1	265	124	127	9.0000
ggg	chr19:54970334-54970569(+)$1	235	12	15	9.0000
ggg	chr22:20067951-20068238(+)$1	287	15	18	9.0000
GGG	chr5:86564044-86564350(+)$1	306	1	4	9.0000
GGG	chr15:28519431-28519668(-)$1	237	8	11	9.0000
ggg	chr1:225615310-225615566(-)$1	256	5	8	9.0000
GGG	chr5:138630334-138630592(+)$1	258	71	74	9.0000
GGG	chr2:160569009-160569300(+)$1	291	24	27	9.0000
GGG	chr20:1165187-1165512(-)$1	325	0	3	9.0000
GGG	chr1:245025909-245026178(-)$1	269	126	129	9.0000
GGG	chr12:123373017-123373294(-)$1	277	11	14	9.0000
GGG	chr1:20236690-20236947(+)$1	257	120	123	9.0000
GGG	chr5:87496083-87496366(-)$1	283	105	108	9.0000
GGG	chr7:155573599-155573874(+)$1	275	182	185	9.0000
GGG	chr11:3012329-3012569(-)$1	240	104	107	9.0000
GGG	chr9:140512683-140513121(-)$1	438	73	76	9.0000
GGG	chr1:182360226-182360488(-)$1	262	3	6	9.0000
GGG	chr1:32573783-32574032(+)$1	249	0	3	9.0000
GGG	chr2:152266678-152266997(+)$1	319	10	13	9.0000
GGG	chr5:86563902-86564168(+)$1	266	101	104	9.0000
GGG	chr10:21845746-21846000(+)$1	254	45	48	9.0000
GGG	chr7:99070412-99070736(+)$1	324	0	3	9.0000
GGG	chrX:77361914-77362145(+)$1	231	134	137	9.0000
GGG	chr8:102217173-102217443(-)$1	270	69	72	9.0000
GGG	chr5:138630292-138630534(+)$1	242	15	18	9.0000
GGG	chr1:62902659-62902943(+)$1	284	24	27	9.0000
GGG	chr16:23585051-23585317(+)$1	266	3	6	9.0000
GGG	chr2:74691996-74692401(-)$1	405	34	37	9.0000
GGG	chr4:152020860-152021119(+)$1	259	39	42	9.0000
GGG	chr21:30672262-30672558(+)$1	296	10	13	9.0000
GGG	chr1:20234886-20235135(+)$1	249	64	67	9.0000
GGG	chr5:138630427-138630680(+)$1	253	2	5	9.0000
GGG	chrX:134476770-134477034(-)$1	264	8	11	9.0000
GGG	chr17:76793747-76794024(-)$1	277	8	11	9.0000
GGG	chr22:19835988-19836238(-)$1	250	11	14	9.0000
GGG	chr14:70234468-70234783(+)$1	315	34	37	9.0000
GGG	chr7:150929969-150930245(+)$1	276	73	76	9.0000
GGG	chr13:27825765-27826078(+)$1	313	38	41	9.0000
GGG	chr7:104752719-104752984(-)$1	265	95	98	9.0000
GGG	chr1:20235897-20236121(+)$1	224	107	110	9.0000
GGG	chr1:6259307-6259556(-)$1	249	16	19	9.0000
GGG	chr19:574994-575327(+)$1	333	21	24	9.0000
GGG	chr19:10766035-10766288(+)$1	253	61	64	9.0000
GGG	chr1:47697283-47697557(-)$1	274	26	29	9.0000
GGG	chr19:8551017-8551241(+)$1	224	7	10	9.0000
GGG	chr7:24613554-24613856(+)$1	302	10	13	9.0000
GGG	chr7:157132577-157132848(+)$1	271	66	69	9.0000
GGG	chr2:131850823-131851112(-)$1	289	0	3	9.0000

#otherMatches

#Struct PSSM
FFF	chr7:66395494-66395794(+)$1	300	5	8	9.0000
ggg	chrX:77361945-77362174(+)$1	229	103	106	9.0000
ggg	chr7:26241709-26241988(+)$1	279	66	69	9.0000
::f	chr1:182360308-182360566(-)$1	258	0	3	9.0000
:a[	chr17:48796911-48797138(+)$1	227	8	11	9.0000
dCC	chrX:109420060-109420339(+)$1	279	19	22	9.0000
dd#	chr21:44269443-44269692(-)$1	249	84	87	9.0000
::I	chr1:20236004-20236247(+)$1	243	0	3	9.0000
ggg	chr12:121159746-121159994(+)$1	248	58	61	9.0000
e]b	chr4:1950032-1950296(+)$1	264	32	35	9.0000
fff	chr1:20235811-20236057(+)$1	246	45	48	9.0000
e[b	chr16:89367033-89367317(-)$1	284	8	11	9.0000
uuu	chr19:49995090-49995318(+)$1	228	49	52	9.0000
ccc	chr1:247094924-247095211(-)$1	287	31	34	9.0000
]cc	chr20:23356993-23357236(-)$1	243	116	119	9.0000
ccc	chr19:57862846-57863114(+)$1	268	78	81	9.0000
ffe	chr19:54970695-54970939(+)$1	244	37	40	9.0000
:::	chr1:155658238-155658505(-)$1	267	1	4	9.0000
ddd	chr8:145149889-145150126(+)$1	237	74	77	9.0000
ddd	chr21:30671631-30671847(+)$1	216	23	26	9.0000
III	chr16:1360062-1360335(+)$1	273	14	17	9.0000
gg!	chr2:11917324-11917624(+)$1	300	86	89	9.0000
:a[	chr17:29632205-29632464(+)$1	259	28	31	9.0000
ddd	chr6:2961138-2961424(-)$1	286	119	122	9.0000
:::	chr4:152020799-152021059(+)$1	260	49	52	9.0000
A{B	chr8:145634449-145634682(-)$1	233	12	15	9.0000
fff	chr2:201728898-201729171(-)$1	273	90	93	9.0000
"""	chr8:102217243-102217522(-)$1	279	2	5	9.0000
D{D	chr19:8550626-8550907(+)$1	281	17	20	9.0000
ee]	chr1:21112548-21112806(-)$1	258	35	38	9.0000
c]d	chr1:247094827-247095124(-)$1	297	32	35	9.0000
MDD	chr10:129924316-129924597(-)$1	281	10	13	9.0000
ddd	chr1:11979704-11980027(-)$1	323	153	156	9.0000
!cc	chr16:89337988-89338244(-)$1	256	120	123	9.0000
c[a	chr16:2059503-2059750(-)$1	247	14	17	9.0000
hhh	chr5:137089641-137089900(-)$1	259	28	31	9.0000
BBH	chr12:77158274-77158551(+)$1	277	0	3	9.0000
FFF	chr16:23584982-23585251(+)$1	269	7	10	9.0000
DDD	chr22:20067749-20067984(+)$1	235	38	41	9.0000
hhh	chr14:23779151-23779454(+)$1	303	29	32	9.0000
ccc	chr11:940593-940835(+)$1	242	201	204	9.0000
:A{	chr5:177631575-177631849(+)$1	274	1	4	9.0000
:CC	chr19:13262789-13263038(+)$1	249	0	3	9.0000
CC{	chr2:131850726-131850994(-)$1	268	2	5	9.0000
{DD	chr19:59055724-59055964(+)$1	240	10	13	9.0000
DDD	chr22:20068100-20068340(+)$1	240	0	3	9.0000
FFF	chr6:170151701-170152074(+)$1	373	37	40	9.0000
c!!	chr19:54970269-54970518(+)$1	249	3	6	9.0000
DD{	chr1:22109427-22109685(-)$1	258	6	9	9.0000
DD{	chr6:2960082-2960357(-)$1	275	9	12	9.0000
[gg	chr14:53162117-53162392(-)$1	275	16	19	9.0000
ffe	chr19:54970615-54970866(+)$1	251	5	8	9.0000
eed	chr4:1947208-1947473(+)$1	265	124	127	9.0000
dee	chr19:54970334-54970569(+)$1	235	12	15	9.0000
hhh	chr22:20067951-20068238(+)$1	287	15	18	9.0000
::D	chr5:86564044-86564350(+)$1	306	1	4	9.0000
JJJ	chr15:28519431-28519668(-)$1	237	8	11	9.0000
d[f	chr1:225615310-225615566(-)$1	256	5	8	9.0000
eee	chr5:138630334-138630592(+)$1	258	71	74	9.0000
EEN	chr2:160569009-160569300(+)$1	291	24	27	9.0000
DDD	chr20:1165187-1165512(-)$1	325	0	3	9.0000
HHH	chr1:245025909-245026178(-)$1	269	126	129	9.0000
nnb	chr12:123373017-123373294(-)$1	277	11	14	9.0000
4ee	chr1:20236690-20236947(+)$1	257	120	123	9.0000
fff	chr5:87496083-87496366(-)$1	283	105	108	9.0000
ggg	chr7:155573599-155573874(+)$1	275	182	185	9.0000
DDD	chr11:3012329-3012569(-)$1	240	104	107	9.0000
lbb	chr9:140512683-140513121(-)$1	438	73	76	9.0000
III	chr1:182360226-182360488(-)$1	262	3	6	9.0000
:FF	chr1:32573783-32574032(+)$1	249	0	3	9.0000
duu	chr2:152266678-152266997(+)$1	319	10	13	9.0000
EEE	chr5:86563902-86564168(+)$1	266	101	104	9.0000
hhh	chr10:21845746-21846000(+)$1	254	45	48	9.0000
:::	chr7:99070412-99070736(+)$1	324	0	3	9.0000
iii	chrX:77361914-77362145(+)$1	231	134	137	9.0000
MMM	chr8:102217173-102217443(-)$1	270	69	72	9.0000
===	chr5:138630292-138630534(+)$1	242	15	18	9.0000
ca[	chr1:62902659-62902943(+)$1	284	24	27	9.0000
III	chr16:23585051-23585317(+)$1	266	3	6	9.0000
FFF	chr2:74691996-74692401(-)$1	405	34	37	9.0000
:::	chr4:152020860-152021119(+)$1	259	39	42	9.0000
ccc	chr21:30672262-30672558(+)$1	296	10	13	9.0000
fff	chr1:20234886-20235135(+)$1	249	64	67	9.0000
:cc	chr5:138630427-138630680(+)$1	253	2	5	9.0000
:HH	chrX:134476770-134477034(-)$1	264	8	11	9.0000
B::	chr17:76793747-76794024(-)$1	277	8	11	9.0000
GGG	chr22:19835988-19836238(-)$1	250	11	14	9.0000
mcc	chr14:70234468-70234783(+)$1	315	34	37	9.0000
===	chr7:150929969-150930245(+)$1	276	73	76	9.0000
a]d	chr13:27825765-27826078(+)$1	313	38	41	9.0000
fff	chr7:104752719-104752984(-)$1	265	95	98	9.0000
fff	chr1:20235897-20236121(+)$1	224	107	110	9.0000
emm	chr1:6259307-6259556(-)$1	249	16	19	9.0000
llf	chr19:574994-575327(+)$1	333	21	24	9.0000
ggg	chr19:10766035-10766288(+)$1	253	61	64	9.0000
{DD	chr1:47697283-47697557(-)$1	274	26	29	9.0000
mmd	chr19:8551017-8551241(+)$1	224	7	10	9.0000
III	chr7:24613554-24613856(+)$1	302	10	13	9.0000
{DD	chr7:157132577-157132848(+)$1	271	66	69	9.0000
::H	chr2:131850823-131851112(-)$1	289	0	3	9.0000

#DB
(((	chr7:66395494-66395794(+)$1	1	5	8	9.0000
(((	chrX:77361945-77362174(+)$1	1	103	106	9.0000
)))	chr7:26241709-26241988(+)$1	1	66	69	9.0000
..(	chr1:182360308-182360566(-)$1	1	0	3	9.0000
.(.	chr17:48796911-48797138(+)$1	1	8	11	9.0000
)((	chrX:109420060-109420339(+)$1	1	19	22	9.0000
((.	chr21:44269443-44269692(-)$1	1	84	87	9.0000
..(	chr1:20236004-20236247(+)$1	1	0	3	9.0000
(((	chr12:121159746-121159994(+)$1	1	58	61	9.0000
).)	chr4:1950032-1950296(+)$1	1	32	35	9.0000
)))	chr1:20235811-20236057(+)$1	1	45	48	9.0000
(.(	chr16:89367033-89367317(-)$1	1	8	11	9.0000
...	chr19:49995090-49995318(+)$1	1	49	52	9.0000
(((	chr1:247094924-247095211(-)$1	1	31	34	9.0000
.))	chr20:23356993-23357236(-)$1	1	116	119	9.0000
)))	chr19:57862846-57863114(+)$1	1	78	81	9.0000
(((	chr19:54970695-54970939(+)$1	1	37	40	9.0000
...	chr1:155658238-155658505(-)$1	1	1	4	9.0000
)))	chr8:145149889-145150126(+)$1	1	74	77	9.0000
(((	chr21:30671631-30671847(+)$1	1	23	26	9.0000
(((	chr16:1360062-1360335(+)$1	1	14	17	9.0000
((.	chr2:11917324-11917624(+)$1	1	86	89	9.0000
.(.	chr17:29632205-29632464(+)$1	1	28	31	9.0000
(((	chr6:2961138-2961424(-)$1	1	119	122	9.0000
...	chr4:152020799-152021059(+)$1	1	49	52	9.0000
(.(	chr8:145634449-145634682(-)$1	1	12	15	9.0000
(((	chr2:201728898-201729171(-)$1	1	90	93	9.0000
...	chr8:102217243-102217522(-)$1	1	2	5	9.0000
(.(	chr19:8550626-8550907(+)$1	1	17	20	9.0000
)).	chr1:21112548-21112806(-)$1	1	35	38	9.0000
).)	chr1:247094827-247095124(-)$1	1	32	35	9.0000
.((	chr10:129924316-129924597(-)$1	1	10	13	9.0000
)))	chr1:11979704-11980027(-)$1	1	153	156	9.0000
.((	chr16:89337988-89338244(-)$1	1	120	123	9.0000
(.(	chr16:2059503-2059750(-)$1	1	14	17	9.0000
)))	chr5:137089641-137089900(-)$1	1	28	31	9.0000
(((	chr12:77158274-77158551(+)$1	1	0	3	9.0000
(((	chr16:23584982-23585251(+)$1	1	7	10	9.0000
(((	chr22:20067749-20067984(+)$1	1	38	41	9.0000
)))	chr14:23779151-23779454(+)$1	1	29	32	9.0000
)))	chr11:940593-940835(+)$1	1	201	204	9.0000
.(.	chr5:177631575-177631849(+)$1	1	1	4	9.0000
.((	chr19:13262789-13263038(+)$1	1	0	3	9.0000
((.	chr2:131850726-131850994(-)$1	1	2	5	9.0000
.((	chr19:59055724-59055964(+)$1	1	10	13	9.0000
(((	chr22:20068100-20068340(+)$1	1	0	3	9.0000
(((	chr6:170151701-170152074(+)$1	1	37	40	9.0000
(..	chr19:54970269-54970518(+)$1	1	3	6	9.0000
((.	chr1:22109427-22109685(-)$1	1	6	9	9.0000
((.	chr6:2960082-2960357(-)$1	1	9	12	9.0000
.((	chr14:53162117-53162392(-)$1	1	16	19	9.0000
(((	chr19:54970615-54970866(+)$1	1	5	8	9.0000
)))	chr4:1947208-1947473(+)$1	1	124	127	9.0000
(((	chr19:54970334-54970569(+)$1	1	12	15	9.0000
(((	chr22:20067951-20068238(+)$1	1	15	18	9.0000
..(	chr5:86564044-86564350(+)$1	1	1	4	9.0000
(((	chr15:28519431-28519668(-)$1	1	8	11	9.0000
(.(	chr1:225615310-225615566(-)$1	1	5	8	9.0000
(((	chr5:138630334-138630592(+)$1	1	71	74	9.0000
((.	chr2:160569009-160569300(+)$1	1	24	27	9.0000
(((	chr20:1165187-1165512(-)$1	1	0	3	9.0000
)))	chr1:245025909-245026178(-)$1	1	126	129	9.0000
..)	chr12:123373017-123373294(-)$1	1	11	14	9.0000
.))	chr1:20236690-20236947(+)$1	1	120	123	9.0000
)))	chr5:87496083-87496366(-)$1	1	105	108	9.0000
(((	chr7:155573599-155573874(+)$1	1	182	185	9.0000
)))	chr11:3012329-3012569(-)$1	1	104	107	9.0000
.))	chr9:140512683-140513121(-)$1	1	73	76	9.0000
(((	chr1:182360226-182360488(-)$1	1	3	6	9.0000
.((	chr1:32573783-32574032(+)$1	1	0	3	9.0000
(..	chr2:152266678-152266997(+)$1	1	10	13	9.0000
(((	chr5:86563902-86564168(+)$1	1	101	104	9.0000
)))	chr10:21845746-21846000(+)$1	1	45	48	9.0000
...	chr7:99070412-99070736(+)$1	1	0	3	9.0000
(((	chrX:77361914-77362145(+)$1	1	134	137	9.0000
...	chr8:102217173-102217443(-)$1	1	69	72	9.0000
(((	chr5:138630292-138630534(+)$1	1	15	18	9.0000
)(.	chr1:62902659-62902943(+)$1	1	24	27	9.0000
(((	chr16:23585051-23585317(+)$1	1	3	6	9.0000
(((	chr2:74691996-74692401(-)$1	1	34	37	9.0000
...	chr4:152020860-152021119(+)$1	1	39	42	9.0000
(((	chr21:30672262-30672558(+)$1	1	10	13	9.0000
)))	chr1:20234886-20235135(+)$1	1	64	67	9.0000
.((	chr5:138630427-138630680(+)$1	1	2	5	9.0000
.((	chrX:134476770-134477034(-)$1	1	8	11	9.0000
(..	chr17:76793747-76794024(-)$1	1	8	11	9.0000
(((	chr22:19835988-19836238(-)$1	1	11	14	9.0000
.))	chr14:70234468-70234783(+)$1	1	34	37	9.0000
)))	chr7:150929969-150930245(+)$1	1	73	76	9.0000
).)	chr13:27825765-27826078(+)$1	1	38	41	9.0000
)))	chr7:104752719-104752984(-)$1	1	95	98	9.0000
)))	chr1:20235897-20236121(+)$1	1	107	110	9.0000
(..	chr1:6259307-6259556(-)$1	1	16	19	9.0000
..)	chr19:574994-575327(+)$1	1	21	24	9.0000
)))	chr19:10766035-10766288(+)$1	1	61	64	9.0000
.((	chr1:47697283-47697557(-)$1	1	26	29	9.0000
..)	chr19:8551017-8551241(+)$1	1	7	10	9.0000
(((	chr7:24613554-24613856(+)$1	1	10	13	9.0000
.((	chr7:157132577-157132848(+)$1	1	66	69	9.0000
..(	chr2:131850823-131851112(-)$1	1	0	3	9.0000

#PSSM
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_CDS_m2_run1.nuc.txt

#NT
GUG	chr2:73476759-73477058(+)$1	299	100	103	8.9999
GUG	chr4:166261254-166261500(+)$1	246	196	199	8.9999
GUG	chr15:101933517-101933785(-)$1	268	227	230	8.9999
GUG	chr6:43196835-43197101(-)$1	266	33	36	8.9999
GUG	chr22:41645696-41645990(-)$1	294	19	22	8.9999
GUG	chr11:118651724-118652006(-)$1	282	20	23	8.9999
GUG	chr1:15944202-15944440(+)$1	238	5	8	8.9999
GUG	chr2:11725765-11725998(+)$1	233	0	3	8.9999
GUG	chr2:242757206-242757504(+)$1	298	33	36	8.9999
GUG	chr2:86354924-86355184(+)$1	260	59	62	8.9999
GUG	chr7:5568246-5568472(-)$1	226	32	35	8.9999
GUG	chr2:242276689-242276942(+)$1	253	201	204	8.9999
GUG	chr13:53001192-53001492(-)$1	300	69	72	8.9999
GUG	chr17:65190018-65190306(-)$1	288	58	61	8.9999
GUG	chr14:101193371-101193611(+)$1	240	101	104	8.9999
GUG	chr19:49951173-49951460(-)$1	287	3	6	8.9999
GUG	chr2:38604144-38604389(-)$1	245	37	40	8.9999
GUG	chr11:61113678-61113919(+)$1	241	4	7	8.9999
gug	chr16:90015120-90015362(+)$1	242	102	105	8.9999
GUG	chr8:103663244-103663515(-)$1	271	82	85	8.9999
GUG	chr3:49070029-49070368(-)$1	339	10	13	8.9999
GUG	chr2:3623933-3624206(+)$1	273	39	42	8.9999
GUG	chr19:48624312-48624528(-)$1	216	76	79	8.9999
gug	chr10:124189003-124189303(+)$1	300	8	11	8.9999
GUG	chr19:5931414-5931689(-)$1	275	24	27	8.9999
GUG	chr9:74331325-74331598(-)$1	273	4	7	8.9999
GUG	chr6:36178882-36179174(+)$1	292	21	24	8.9999
GUG	chrX:153661848-153662134(+)$1	286	11	14	8.9999
GUG	chr2:190719593-190719869(+)$1	276	137	140	8.9999
GUG	chr14:105916206-105916522(+)$1	316	35	38	8.9999
GUG	chr1:1421105-1421366(+)$1	261	8	11	8.9999
GUG	chr22:50898262-50898483(-)$1	221	103	106	8.9999
GUG	chr16:88722017-88722268(-)$1	251	9	12	8.9999
GUG	chr1:1724594-1724850(-)$1	256	26	29	8.9999
GUG	chr2:208425700-208426027(+)$1	327	5	8	8.9999
GUG	chr17:55187414-55187663(+)$1	249	96	99	8.9999
GUG	chr12:46758777-46758991(-)$1	214	22	25	8.9999
GUG	chr16:733992-734282(-)$1	290	8	11	8.9999
GUG	chr3:133494140-133494415(+)$1	275	14	17	8.9999
GUG	chr16:88872748-88873034(+)$1	286	35	38	8.9999
GUG	chr1:146634014-146634295(-)$1	281	30	33	8.9999
GUG	chr14:75349166-75349429(+)$1	263	55	58	8.9999
GUG	chr8:145638471-145638722(-)$1	251	17	20	8.9999
GUG	chr11:65625426-65625681(-)$1	255	83	86	8.9999
GUG	chr6:33240277-33240520(+)$1	243	9	12	8.9999
GUG	chr22:39709054-39709306(-)$1	252	0	3	8.9999
GUG	chr19:1056980-1057221(+)$1	241	103	106	8.9999
GUG	chr1:1291926-1292221(-)$1	295	21	24	8.9999
GUG	chr16:29815318-29815528(+)$1	210	68	71	8.9999
GUG	chr4:39460346-39460612(-)$1	266	6	9	8.9999
GUG	chr9:124074444-124074730(+)$1	286	29	32	8.9999
GUG	chr21:47628059-47628265(-)$1	206	3	6	8.9999
GUG	chr1:155707772-155708134(+)$1	362	28	31	8.9999
GUG	chr1:228584507-228584764(-)$1	257	26	29	8.9999
GUG	chr16:54319527-54319796(-)$1	269	183	186	8.9999
GUG	chr6:159050728-159050988(+)$1	260	175	178	8.9999
GUG	chr16:28847470-28847713(+)$1	243	27	30	8.9999
GUG	chr17:1650181-1650419(+)$1	238	3	6	8.9999
GUG	chr2:48046071-48046338(-)$1	267	104	107	8.9999
GUG	chr3:133475005-133475266(+)$1	261	29	32	8.9999
GUG	chr20:47879831-47880145(-)$1	314	61	64	8.9999
GUG	chr2:44064960-44065279(-)$1	319	1	4	8.9999
GUG	chr11:61734655-61734884(-)$1	229	11	14	8.9999
GUG	chr2:170668066-170668343(+)$1	277	45	48	8.9999
GUG	chr19:10218180-10218420(+)$1	240	30	33	8.9999
GUG	chr10:82271915-82272175(+)$1	260	48	51	8.9999
GUG	chr19:39908228-39908468(+)$1	240	17	20	8.9999
GUG	chr3:10346697-10346974(-)$1	277	87	90	8.9999
GUG	chr11:1307085-1307333(-)$1	248	2	5	8.9999
GUG	chr10:113919633-113919910(-)$1	277	185	188	8.9999
GUG	chrX:77380821-77381057(+)$1	236	2	5	8.9999
GUG	chr8:145651452-145651740(-)$1	288	12	15	8.9999
GUG	chr18:21116712-21116988(-)$1	276	62	65	8.9999
gug	chr7:5336381-5336699(+)$1	318	12	15	8.9999
GUG	chr2:9572505-9572778(+)$1	273	69	72	8.9999
GUG	chr1:203816633-203816933(+)$1	300	40	43	8.9999
GUG	chr14:54418403-54418640(-)$1	237	48	51	8.9999
GUG	chr9:732510-732757(+)$1	247	48	51	8.9999
GUG	chr1:156106578-156106838(+)$1	260	1	4	8.9999
GUG	chr6:43481194-43481526(-)$1	332	24	27	8.9999
GUG	chr9:734709-734972(+)$1	263	4	7	8.9999
GUG	chr19:48281964-48282212(+)$1	248	20	23	8.9999
GUG	chr16:46931548-46931760(+)$1	212	101	104	8.9999
GUG	chr17:79867284-79867490(-)$1	206	22	25	8.9999
GUG	chr22:29196146-29196386(-)$1	240	101	104	8.9999
GUG	chr11:125483849-125484154(+)$1	305	10	13	8.9999
GUG	chr19:9938963-9939179(+)$1	216	33	36	8.9999
GUG	chr17:74349439-74349716(-)$1	277	113	116	8.9999
GUG	chr17:37882671-37882932(+)$1	261	6	9	8.9999
GUG	chr2:70527950-70528226(-)$1	276	3	6	8.9999

#otherMatches

#Struct PSSM
d]b	chr19:56170429-56170695(+)$1	266	43	46	8.9999
fff	chr2:73476759-73477058(+)$1	299	100	103	8.9999
ddd	chr4:166261254-166261500(+)$1	246	196	199	8.9999
mmc	chr15:101933517-101933785(-)$1	268	227	230	8.9999
hhh	chr6:43196835-43197101(-)$1	266	33	36	8.9999
DCC	chr22:41645696-41645990(-)$1	294	19	22	8.9999
HHH	chr11:118651724-118652006(-)$1	282	20	23	8.9999
HHH	chr1:15944202-15944440(+)$1	238	5	8	8.9999
::B	chr2:11725765-11725998(+)$1	233	0	3	8.9999
c[a	chr2:242757206-242757504(+)$1	298	33	36	8.9999
eee	chr2:86354924-86355184(+)$1	260	59	62	8.9999
ddd	chr7:5568246-5568472(-)$1	226	32	35	8.9999
ggc	chr2:242276689-242276942(+)$1	253	201	204	8.9999
fff	chr13:53001192-53001492(-)$1	300	69	72	8.9999
ddd	chr17:65190018-65190306(-)$1	288	58	61	8.9999
ddd	chr14:101193371-101193611(+)$1	240	101	104	8.9999
d[b	chr19:49951173-49951460(-)$1	287	3	6	8.9999
!!b	chr2:38604144-38604389(-)$1	245	37	40	8.9999
GGG	chr11:61113678-61113919(+)$1	241	4	7	8.9999
mmb	chr16:90015120-90015362(+)$1	242	102	105	8.9999
eee	chr8:103663244-103663515(-)$1	271	82	85	8.9999
CC{	chr3:49070029-49070368(-)$1	339	10	13	8.9999
eel	chr2:3623933-3624206(+)$1	273	39	42	8.9999
CYY	chr19:48624312-48624528(-)$1	216	76	79	8.9999
NDD	chr10:124189003-124189303(+)$1	300	8	11	8.9999
::D	chr19:5931414-5931689(-)$1	275	24	27	8.9999
III	chr9:74331325-74331598(-)$1	273	4	7	8.9999
d##	chr6:36178882-36179174(+)$1	292	21	24	8.9999
eee	chrX:153661848-153662134(+)$1	286	11	14	8.9999
#a[	chr2:190719593-190719869(+)$1	276	137	140	8.9999
ddd	chr14:105916206-105916522(+)$1	316	35	38	8.9999
{DD	chr1:1421105-1421366(+)$1	261	8	11	8.9999
fff	chr22:50898262-50898483(-)$1	221	103	106	8.9999
FFF	chr16:88722017-88722268(-)$1	251	9	12	8.9999
cce	chr1:1724594-1724850(-)$1	256	26	29	8.9999
cc!	chr2:208425700-208426027(+)$1	327	5	8	8.9999
eec	chr17:55187414-55187663(+)$1	249	96	99	8.9999
:::	chr12:46758777-46758991(-)$1	214	22	25	8.9999
{CC	chr16:733992-734282(-)$1	290	8	11	8.9999
eee	chr3:133494140-133494415(+)$1	275	14	17	8.9999
DDD	chr16:88872748-88873034(+)$1	286	35	38	8.9999
ggg	chr1:146634014-146634295(-)$1	281	30	33	8.9999
]cc	chr14:75349166-75349429(+)$1	263	55	58	8.9999
eee	chr8:145638471-145638722(-)$1	251	17	20	8.9999
bbD	chr11:65625426-65625681(-)$1	255	83	86	8.9999
C{C	chr6:33240277-33240520(+)$1	243	9	12	8.9999
:::	chr22:39709054-39709306(-)$1	252	0	3	8.9999
b[d	chr19:1056980-1057221(+)$1	241	103	106	8.9999
===	chr1:1291926-1292221(-)$1	295	21	24	8.9999
BBL	chr16:29815318-29815528(+)$1	210	68	71	8.9999
:HH	chr4:39460346-39460612(-)$1	266	6	9	8.9999
III	chr9:124074444-124074730(+)$1	286	29	32	8.9999
::B	chr21:47628059-47628265(-)$1	206	3	6	8.9999
DDK	chr1:155707772-155708134(+)$1	362	28	31	8.9999
CCC	chr1:228584507-228584764(-)$1	257	26	29	8.9999
cc]	chr16:54319527-54319796(-)$1	269	183	186	8.9999
DDD	chr6:159050728-159050988(+)$1	260	175	178	8.9999
===	chr16:28847470-28847713(+)$1	243	27	30	8.9999
C{D	chr17:1650181-1650419(+)$1	238	3	6	8.9999
!cc	chr2:48046071-48046338(-)$1	267	104	107	8.9999
ddd	chr3:133475005-133475266(+)$1	261	29	32	8.9999
[aq	chr20:47879831-47880145(-)$1	314	61	64	8.9999
[gg	chr2:44064960-44065279(-)$1	319	1	4	8.9999
OOO	chr11:61734655-61734884(-)$1	229	11	14	8.9999
"ee	chr2:170668066-170668343(+)$1	277	45	48	8.9999
lll	chr19:10218180-10218420(+)$1	240	30	33	8.9999
cc]	chr10:82271915-82272175(+)$1	260	48	51	8.9999
bb[	chr19:39908228-39908468(+)$1	240	17	20	8.9999
:EE	chr3:10346697-10346974(-)$1	277	87	90	8.9999
DD:	chr11:1307085-1307333(-)$1	248	2	5	8.9999
ddd	chr10:113919633-113919910(-)$1	277	185	188	8.9999
ggg	chrX:77380821-77381057(+)$1	236	2	5	8.9999
GGG	chr8:145651452-145651740(-)$1	288	12	15	8.9999
G::	chr18:21116712-21116988(-)$1	276	62	65	8.9999
eeq	chr7:5336381-5336699(+)$1	318	12	15	8.9999
Jff	chr2:9572505-9572778(+)$1	273	69	72	8.9999
:::	chr1:203816633-203816933(+)$1	300	40	43	8.9999
mmm	chr14:54418403-54418640(-)$1	237	48	51	8.9999
C{B	chr9:732510-732757(+)$1	247	48	51	8.9999
::B	chr1:156106578-156106838(+)$1	260	1	4	8.9999
eee	chr6:43481194-43481526(-)$1	332	24	27	8.9999
:::	chr9:734709-734972(+)$1	263	4	7	8.9999
ccc	chr19:48281964-48282212(+)$1	248	20	23	8.9999
fff	chr16:46931548-46931760(+)$1	212	101	104	8.9999
ddq	chr17:79867284-79867490(-)$1	206	22	25	8.9999
{EE	chr22:29196146-29196386(-)$1	240	101	104	8.9999
ecc	chr11:125483849-125484154(+)$1	305	10	13	8.9999
ooo	chr19:9938963-9939179(+)$1	216	33	36	8.9999
ggg	chr17:74349439-74349716(-)$1	277	113	116	8.9999
HHc	chr17:37882671-37882932(+)$1	261	6	9	8.9999
III	chr2:70527950-70528226(-)$1	276	3	6	8.9999

#DB
).)	chr19:56170429-56170695(+)$1	1	43	46	8.9999
(((	chr2:73476759-73477058(+)$1	1	100	103	8.9999
)))	chr4:166261254-166261500(+)$1	1	196	199	8.9999
..)	chr15:101933517-101933785(-)$1	1	227	230	8.9999
)))	chr6:43196835-43197101(-)$1	1	33	36	8.9999
(((	chr22:41645696-41645990(-)$1	1	19	22	8.9999
(((	chr11:118651724-118652006(-)$1	1	20	23	8.9999
(((	chr1:15944202-15944440(+)$1	1	5	8	8.9999
..(	chr2:11725765-11725998(+)$1	1	0	3	8.9999
(.(	chr2:242757206-242757504(+)$1	1	33	36	8.9999
(((	chr2:86354924-86355184(+)$1	1	59	62	8.9999
)))	chr7:5568246-5568472(-)$1	1	32	35	8.9999
))(	chr2:242276689-242276942(+)$1	1	201	204	8.9999
)))	chr13:53001192-53001492(-)$1	1	69	72	8.9999
(((	chr17:65190018-65190306(-)$1	1	58	61	8.9999
)))	chr14:101193371-101193611(+)$1	1	101	104	8.9999
(.(	chr19:49951173-49951460(-)$1	1	3	6	8.9999
..(	chr2:38604144-38604389(-)$1	1	37	40	8.9999
(((	chr11:61113678-61113919(+)$1	1	4	7	8.9999
..)	chr16:90015120-90015362(+)$1	1	102	105	8.9999
)))	chr8:103663244-103663515(-)$1	1	82	85	8.9999
((.	chr3:49070029-49070368(-)$1	1	10	13	8.9999
((.	chr2:3623933-3624206(+)$1	1	39	42	8.9999
)..	chr19:48624312-48624528(-)$1	1	76	79	8.9999
.((	chr10:124189003-124189303(+)$1	1	8	11	8.9999
..(	chr19:5931414-5931689(-)$1	1	24	27	8.9999
(((	chr9:74331325-74331598(-)$1	1	4	7	8.9999
(..	chr6:36178882-36179174(+)$1	1	21	24	8.9999
(((	chrX:153661848-153662134(+)$1	1	11	14	8.9999
.(.	chr2:190719593-190719869(+)$1	1	137	140	8.9999
)))	chr14:105916206-105916522(+)$1	1	35	38	8.9999
.((	chr1:1421105-1421366(+)$1	1	8	11	8.9999
)))	chr22:50898262-50898483(-)$1	1	103	106	8.9999
(((	chr16:88722017-88722268(-)$1	1	9	12	8.9999
(((	chr1:1724594-1724850(-)$1	1	26	29	8.9999
((.	chr2:208425700-208426027(+)$1	1	5	8	8.9999
)))	chr17:55187414-55187663(+)$1	1	96	99	8.9999
...	chr12:46758777-46758991(-)$1	1	22	25	8.9999
.((	chr16:733992-734282(-)$1	1	8	11	8.9999
)))	chr3:133494140-133494415(+)$1	1	14	17	8.9999
(((	chr16:88872748-88873034(+)$1	1	35	38	8.9999
)))	chr1:146634014-146634295(-)$1	1	30	33	8.9999
.))	chr14:75349166-75349429(+)$1	1	55	58	8.9999
(((	chr8:145638471-145638722(-)$1	1	17	20	8.9999
))(	chr11:65625426-65625681(-)$1	1	83	86	8.9999
(.(	chr6:33240277-33240520(+)$1	1	9	12	8.9999
...	chr22:39709054-39709306(-)$1	1	0	3	8.9999
(.(	chr19:1056980-1057221(+)$1	1	103	106	8.9999
(((	chr1:1291926-1292221(-)$1	1	21	24	8.9999
((.	chr16:29815318-29815528(+)$1	1	68	71	8.9999
.((	chr4:39460346-39460612(-)$1	1	6	9	8.9999
(((	chr9:124074444-124074730(+)$1	1	29	32	8.9999
..(	chr21:47628059-47628265(-)$1	1	3	6	8.9999
((.	chr1:155707772-155708134(+)$1	1	28	31	8.9999
(((	chr1:228584507-228584764(-)$1	1	26	29	8.9999
)).	chr16:54319527-54319796(-)$1	1	183	186	8.9999
)))	chr6:159050728-159050988(+)$1	1	175	178	8.9999
(((	chr16:28847470-28847713(+)$1	1	27	30	8.9999
(.(	chr17:1650181-1650419(+)$1	1	3	6	8.9999
.((	chr2:48046071-48046338(-)$1	1	104	107	8.9999
)))	chr3:133475005-133475266(+)$1	1	29	32	8.9999
.(.	chr20:47879831-47880145(-)$1	1	61	64	8.9999
.((	chr2:44064960-44065279(-)$1	1	1	4	8.9999
...	chr11:61734655-61734884(-)$1	1	11	14	8.9999
.((	chr2:170668066-170668343(+)$1	1	45	48	8.9999
...	chr19:10218180-10218420(+)$1	1	30	33	8.9999
)).	chr10:82271915-82272175(+)$1	1	48	51	8.9999
((.	chr19:39908228-39908468(+)$1	1	17	20	8.9999
.))	chr3:10346697-10346974(-)$1	1	87	90	8.9999
((.	chr11:1307085-1307333(-)$1	1	2	5	8.9999
)))	chr10:113919633-113919910(-)$1	1	185	188	8.9999
(((	chrX:77380821-77381057(+)$1	1	2	5	8.9999
(((	chr8:145651452-145651740(-)$1	1	12	15	8.9999
(..	chr18:21116712-21116988(-)$1	1	62	65	8.9999
((.	chr7:5336381-5336699(+)$1	1	12	15	8.9999
(((	chr2:9572505-9572778(+)$1	1	69	72	8.9999
...	chr1:203816633-203816933(+)$1	1	40	43	8.9999
...	chr14:54418403-54418640(-)$1	1	48	51	8.9999
(.(	chr9:732510-732757(+)$1	1	48	51	8.9999
..(	chr1:156106578-156106838(+)$1	1	1	4	8.9999
(((	chr6:43481194-43481526(-)$1	1	24	27	8.9999
...	chr9:734709-734972(+)$1	1	4	7	8.9999
)))	chr19:48281964-48282212(+)$1	1	20	23	8.9999
)))	chr16:46931548-46931760(+)$1	1	101	104	8.9999
((.	chr17:79867284-79867490(-)$1	1	22	25	8.9999
.((	chr22:29196146-29196386(-)$1	1	101	104	8.9999
(((	chr11:125483849-125484154(+)$1	1	10	13	8.9999
...	chr19:9938963-9939179(+)$1	1	33	36	8.9999
)))	chr17:74349439-74349716(-)$1	1	113	116	8.9999
(((	chr17:37882671-37882932(+)$1	1	6	9	8.9999
(((	chr2:70527950-70528226(-)$1	1	3	6	8.9999

#PSSM
G : 0.96	g : 0.03	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	

#score	818.9999999999998
#seq	91
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_UTR_m1_run2.nuc.txt

#NT
gccccccccuucc	chr11:2160389-2160600(-)$1	211	23	36	21.1818
ccuuuucccuucc	chr3:33155409-33155716(+)$1	307	113	126	17.9090
CCCUGUCCCUGCC	chr19:11561429-11561713(+)$1	284	268	281	18.6363
CCCCACCUCUUCC	chr1:1152553-1152816(-)$1	263	8	21	19.7272
gccccccccuucc	chr11:2160515-2160719(-)$1	204	142	155	21.1818
gccccccccuucc	chr11:2160476-2160682(-)$1	206	105	118	21.1818
CCCCUCCCUGUCC	chr2:27264202-27264530(+)$1	328	114	127	18.4545
CCCUACCCCUCCC	chr17:73842630-73842936(-)$1	306	160	173	23.0000
UCCUACCCCAUCC	chr11:118895163-118895440(-)$1	277	140	153	18.8181
UCCUCCCCCUUCC	chr11:65622260-65622511(-)$1	251	24	37	22.4545
cccgaccccaucc	chr9:116831892-116832124(-)$1	232	161	174	19.0000
cccuuccccuguc	chr17:80708516-80708887(+)$1	371	128	141	19.8181
GCCCUCCCCCUCC	chr11:61067415-61067707(-)$1	292	151	164	19.8181
CCCAGCCCCUCCC	chr5:149781561-149781798(-)$1	237	65	78	20.8181
CCCCUCCCUUGCC	chr22:39218309-39218595(-)$1	286	1	14	19.6363
CCCCUCCCCUUCC	chr16:28834334-28834598(+)$1	264	45	58	25.5454
GCCUUCCCCUCCC	chr12:57606560-57606822(+)$1	262	83	96	22.4545
CCCUGCCCCUGCC	chr9:96018489-96018836(+)$1	347	19	32	22.9090
CCCGGCCCCAUCC	chr1:1375155-1375482(+)$1	327	232	245	19.3636
ucccucccuuucc	chr16:69733870-69734151(+)$1	281	122	135	19.1818
CCCAGCCCUUUCC	chr20:30754003-30754293(+)$1	290	150	163	19.1818
CCCUGUCCCCUCC	chr9:35697469-35697762(-)$1	293	132	145	17.9090
CCCUGUCCCUGCC	chr19:11561540-11561832(+)$1	292	157	170	18.6363
UCCUUCCCUUUCC	chr17:8063741-8064040(-)$1	299	138	151	20.6363
CCCUUCCCCUCCC	chr11:2154348-2154553(-)$1	205	85	98	25.0909
GCCUUCCCCUCCC	chr12:57606509-57606760(+)$1	251	134	147	22.4545
CCCUUCCCCGUCC	chr10:74127675-74127973(-)$1	298	169	182	23.4545
CUCUGCCCCUGCC	chr16:28848133-28848381(+)$1	248	165	178	18.5454
CCCGCCCUCUUCC	chrX:153576997-153577268(-)$1	271	107	120	18.9090
CGCUUCCCCUACC	chrX:152954126-152954399(+)$1	273	131	144	19.7272
CCCUUCCUCACCC	chr11:61048318-61048699(-)$1	381	305	318	18.0909
UCCUUCCCUUUCC	chr19:54377684-54378057(+)$1	373	251	264	20.6363
gccccccccuucc	chr11:2160482-2160715(-)$1	233	138	151	21.1818
cccuuccccuucc	chr12:53845886-53846182(+)$1	296	220	233	27.0000
gccccccccuucc	chr11:2160366-2160589(-)$1	223	12	25	21.1818
CCCCUCCCCUCCC	chr20:335252-335509(+)$1	257	82	95	23.6363
CCCUGCCCCUCCA	chr14:23794781-23795071(+)$1	290	208	221	18.9090
GCCUUCCCCUCCC	chr12:57606450-57606709(+)$1	259	193	206	22.4545
CCCCACCCCUUCG	chr17:75494735-75495006(+)$1	271	115	128	18.9090
CCCUCCCCUCUCC	chr11:2151135-2151352(-)$1	217	24	37	18.6363
cccuucacccucc	chr19:14203527-14203827(-)$1	300	104	117	19.0909
UUCUUCCCCUUCC	chr6:41757283-41757593(+)$1	310	132	145	19.8181
ACCUACCCCUUCC	chr6:43479522-43479769(-)$1	247	114	127	21.5454
CCCUGCCUCUUCC	chr19:47113423-47113713(+)$1	290	131	144	21.5454
UCCUUCCCCUUCA	chr10:104417308-104417573(+)$1	265	113	126	19.7272
CCCUCCCCUCUCC	chr11:2151111-2151332(-)$1	221	4	17	18.6363
ccccuccccuucc	chr7:917470-917724(+)$1	254	31	44	25.5454
CCCCUCCCCCUCC	chr5:10353793-10354105(+)$1	312	20	33	22.4545
CCCAUCCUCUACC	chr11:73372590-73372888(+)$1	298	119	132	18.0000
cccuuccCCUGCU	chr16:2819011-2819347(+)$1	336	196	209	20.0909
CUCUUCCUCUCCC	chr17:37872406-37872720(+)$1	314	11	24	17.0000
CCCAUCCCCAACC	chr12:6438966-6439298(-)$1	332	294	307	18.4545
CCCUUCCCCUCCC	chr11:2154237-2154523(-)$1	286	55	68	25.0909
CCCUCCCUCUCCC	chr11:46405054-46405338(+)$1	284	44	57	19.6363

#otherMatches

#Struct PSSM
:::::::::::::	chr1:20812227-20812502(-)$1	275	136	149	22.4545
eeessssssssss	chr11:2160389-2160600(-)$1	211	23	36	21.1818
hh:::::::::::	chr3:33155409-33155716(+)$1	307	113	126	17.9090
:::::::::::::	chr19:11561429-11561713(+)$1	284	268	281	18.6363
::dddd$$$$$cc	chr1:1152553-1152816(-)$1	263	8	21	19.7272
eeessssssssss	chr11:2160515-2160719(-)$1	204	142	155	21.1818
bmmmmbb4444gg	chr11:2160476-2160682(-)$1	206	105	118	21.1818
b::::::::::::	chr2:27264202-27264530(+)$1	328	114	127	18.4545
a[a!!ddddpppp	chr17:73842630-73842936(-)$1	306	160	173	23.0000
####bb!!bbbbe	chr11:118895163-118895440(-)$1	277	140	153	18.8181
HHHHMMMMEEEEE	chr11:65622260-65622511(-)$1	251	24	37	22.4545
:::::::::::::	chr9:116831892-116832124(-)$1	232	161	174	19.0000
:::::::::::::	chr17:80708516-80708887(+)$1	371	128	141	19.8181
ggggg:::EEEEE	chr11:61067415-61067707(-)$1	292	151	164	19.8181
::::FFFFFF:::	chr5:149781561-149781798(-)$1	237	65	78	20.8181
B{FFFFFFQQQQQ	chr22:39218309-39218595(-)$1	286	1	14	19.6363
:::::::::::::	chr16:28834334-28834598(+)$1	264	45	58	25.5454
=====]=======	chr12:57606560-57606822(+)$1	262	83	96	22.4545
ooooccccccmmm	chr9:96018489-96018836(+)$1	347	19	32	22.9090
ddccc[eeeee""	chr1:1375155-1375482(+)$1	327	232	245	19.3636
:::::::::::::	chr16:69733870-69734151(+)$1	281	122	135	19.1818
yyyyyyyyyyddd	chr20:30754003-30754293(+)$1	290	150	163	19.1818
qqdddd:::::::	chr9:35697469-35697762(-)$1	293	132	145	17.9090
ccc[dddd####f	chr19:11561540-11561832(+)$1	292	157	170	18.6363
:::::::::::::	chr17:8063741-8064040(-)$1	299	138	151	20.6363
a]eeeee::::::	chr11:2154348-2154553(-)$1	205	85	98	25.0909
iii::::::::::	chr12:57606509-57606760(+)$1	251	134	147	22.4545
:::::::::::::	chr10:74127675-74127973(-)$1	298	169	182	23.4545
============2	chr16:28848133-28848381(+)$1	248	165	178	18.5454
{EEEEENNNNNAE	chrX:153576997-153577268(-)$1	271	107	120	18.9090
hhhtttttttttt	chrX:152954126-152954399(+)$1	273	131	144	19.7272
mmdddd]eeeeeG	chr11:61048318-61048699(-)$1	381	305	318	18.0909
::::::::::CCC	chr19:54377684-54378057(+)$1	373	251	264	20.6363
eeessssssssss	chr11:2160482-2160715(-)$1	233	138	151	21.1818
B::::::::::::	chr12:53845886-53846182(+)$1	296	220	233	27.0000
eeessssssssss	chr11:2160366-2160589(-)$1	223	12	25	21.1818
:::::::::::::	chr20:335252-335509(+)$1	257	82	95	23.6363
nnnnccc:a[ddd	chr14:23794781-23795071(+)$1	290	208	221	18.9090
iii:::::::::D	chr12:57606450-57606709(+)$1	259	193	206	22.4545
dddd!!eeeee$$	chr17:75494735-75495006(+)$1	271	115	128	18.9090
:ffffff!!eeee	chr11:2151135-2151352(-)$1	217	24	37	18.6363
>>>>>>>>>>fff	chr19:14203527-14203827(-)$1	300	104	117	19.0909
ttttttccc::::	chr6:41757283-41757593(+)$1	310	132	145	19.8181
:::::::::::::	chr6:43479522-43479769(-)$1	247	114	127	21.5454
:::::::::::::	chr19:47113423-47113713(+)$1	290	131	144	21.5454
ggggggg"""ddd	chr10:104417308-104417573(+)$1	265	113	126	19.7272
:ffffff!!eeee	chr11:2151111-2151332(-)$1	221	4	17	18.6363
^^^^^^^^^^^^^	chr7:917470-917724(+)$1	254	31	44	25.5454
cvvvvvvvvvvvv	chr5:10353793-10354105(+)$1	312	20	33	22.4545
8888888dddda]	chr11:73372590-73372888(+)$1	298	119	132	18.0000
GGGG{CCCPPPPP	chr16:2819011-2819347(+)$1	336	196	209	20.0909
:::::GGGGGGGP	chr17:37872406-37872720(+)$1	314	11	24	17.0000
CC:::::::::bb	chr12:6438966-6439298(-)$1	332	294	307	18.4545
a]eeeee::::::	chr11:2154237-2154523(-)$1	286	55	68	25.0909
zzzzzzzzzzzhh	chr11:46405054-46405338(+)$1	284	44	57	19.6363

#DB
.............	chr1:20812227-20812502(-)$1	1	136	149	22.4545
(((..........	chr11:2160389-2160600(-)$1	1	23	36	21.1818
))...........	chr3:33155409-33155716(+)$1	1	113	126	17.9090
.............	chr19:11561429-11561713(+)$1	1	268	281	18.6363
..((((.....((	chr1:1152553-1152816(-)$1	1	8	21	19.7272
(((..........	chr11:2160515-2160719(-)$1	1	142	155	21.1818
(....))....))	chr11:2160476-2160682(-)$1	1	105	118	21.1818
)............	chr2:27264202-27264530(+)$1	1	114	127	18.4545
(.(..((((....	chr17:73842630-73842936(-)$1	1	160	173	23.0000
....((..(((((	chr11:118895163-118895440(-)$1	1	140	153	18.8181
((((....(((((	chr11:65622260-65622511(-)$1	1	24	37	22.4545
.............	chr9:116831892-116832124(-)$1	1	161	174	19.0000
.............	chr17:80708516-80708887(+)$1	1	128	141	19.8181
)))))...)))))	chr11:61067415-61067707(-)$1	1	151	164	19.8181
....((((((...	chr5:149781561-149781798(-)$1	1	65	78	20.8181
(.((((((.....	chr22:39218309-39218595(-)$1	1	1	14	19.6363
.............	chr16:28834334-28834598(+)$1	1	45	58	25.5454
))))).)))))))	chr12:57606560-57606822(+)$1	1	83	96	22.4545
....)))(((...	chr9:96018489-96018836(+)$1	1	19	32	22.9090
(((((.(((((..	chr1:1375155-1375482(+)$1	1	232	245	19.3636
.............	chr16:69733870-69734151(+)$1	1	122	135	19.1818
..........)))	chr20:30754003-30754293(+)$1	1	150	163	19.1818
..)))).......	chr9:35697469-35697762(-)$1	1	132	145	17.9090
(((.((((....(	chr19:11561540-11561832(+)$1	1	157	170	18.6363
.............	chr17:8063741-8064040(-)$1	1	138	151	20.6363
).)))))......	chr11:2154348-2154553(-)$1	1	85	98	25.0909
)))..........	chr12:57606509-57606760(+)$1	1	134	147	22.4545
.............	chr10:74127675-74127973(-)$1	1	169	182	23.4545
)))))))))))).	chr16:28848133-28848381(+)$1	1	165	178	18.5454
.(((((.....((	chrX:153576997-153577268(-)$1	1	107	120	18.9090
(((..........	chrX:152954126-152954399(+)$1	1	131	144	19.7272
..)))).))))))	chr11:61048318-61048699(-)$1	1	305	318	18.0909
..........(((	chr19:54377684-54378057(+)$1	1	251	264	20.6363
(((..........	chr11:2160482-2160715(-)$1	1	138	151	21.1818
)............	chr12:53845886-53846182(+)$1	1	220	233	27.0000
(((..........	chr11:2160366-2160589(-)$1	1	12	25	21.1818
.............	chr20:335252-335509(+)$1	1	82	95	23.6363
....))).(.(((	chr14:23794781-23795071(+)$1	1	208	221	18.9090
))).........)	chr12:57606450-57606709(+)$1	1	193	206	22.4545
((((..(((((..	chr17:75494735-75495006(+)$1	1	115	128	18.9090
.((((((..((((	chr11:2151135-2151352(-)$1	1	24	37	18.6363
..........)))	chr19:14203527-14203827(-)$1	1	104	117	19.0909
......)))....	chr6:41757283-41757593(+)$1	1	132	145	19.8181
.............	chr6:43479522-43479769(-)$1	1	114	127	21.5454
.............	chr19:47113423-47113713(+)$1	1	131	144	21.5454
(((((((...(((	chr10:104417308-104417573(+)$1	1	113	126	19.7272
.((((((..((((	chr11:2151111-2151332(-)$1	1	4	17	18.6363
.............	chr7:917470-917724(+)$1	1	31	44	25.5454
(............	chr5:10353793-10354105(+)$1	1	20	33	22.4545
.......))))).	chr11:73372590-73372888(+)$1	1	119	132	18.0000
((((.(((.....	chr16:2819011-2819347(+)$1	1	196	209	20.0909
.....(((((((.	chr17:37872406-37872720(+)$1	1	11	24	17.0000
)).........((	chr12:6438966-6439298(-)$1	1	294	307	18.4545
).)))))......	chr11:2154237-2154523(-)$1	1	55	68	25.0909
...........))	chr11:46405054-46405338(+)$1	1	44	57	19.6363

#PSSM
C : 0.54	c : 0.14	U : 0.10	g : 0.09	G : 0.07	u : 0.01	A : 0.01	
C : 0.67	c : 0.25	U : 0.05	G : 0.01	
C : 0.74	c : 0.23	u : 0.01	
U : 0.49	c : 0.14	C : 0.14	u : 0.09	A : 0.07	G : 0.03	g : 0.01	
U : 0.38	G : 0.18	u : 0.14	c : 0.09	A : 0.09	C : 0.09	a : 0.01	
C : 0.69	c : 0.23	U : 0.05	u : 0.01	
C : 0.74	c : 0.23	a : 0.01	
C : 0.63	c : 0.23	U : 0.12	
C : 0.63	c : 0.21	U : 0.12	u : 0.01	
U : 0.56	u : 0.18	C : 0.09	A : 0.07	c : 0.03	G : 0.03	a : 0.01	
U : 0.38	u : 0.21	C : 0.21	G : 0.10	A : 0.05	g : 0.01	
C : 0.76	c : 0.21	u : 0.01	
C : 0.69	c : 0.23	A : 0.03	G : 0.01	U : 0.01	

#score	1135.3636363636367
#seq	55
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_UTR_m2_run2.nuc.txt

#NT
AAAAUGGUCACCUUCUAAAAGAUAUAUUCAUAGUUAUUAAUGACCCUAUUCCCACCACAAAUUUUAAAGUGCUCCUAAGCCCAUAACUUGCCUGUUUGAACUAUGGUAAUGGGUGGAAGAGGAGUUCACCAGUUUCAAAGAUCAGACUCUGUAUCAAAAGUACCUUUGCCCUUAGGAAGAGUGAGUAUUGGAGUCAUCUUAUCUAUUACUCCAAACCUCCCUUUUUAUUUCUUGAGCCUGGCUUGGACCUUGGCAUUCCGUUUGAAUUCCUUCUA	chr16:71765804-71766159(-)$1	355	38	313	375.0000

#otherMatches

#Struct PSSM
MMMMGGGGGGG{BB{DDDDdddd==========[a''''''''gggggggtttttttttttggggggga]==========]dddd:::dddd[iiiiiiiii!!ccc[a[abb!!dddd!!ddddmmmmdddddddd22bb]a]a]ccc22iiiiiiiii333ddddeeeeemmmmeeeee::::::DDDDYYBB}GGGGGGG______DDDD}AYYDDDD:::::::::::eeeeemmmmeeeee:::::::::::::::::::::::::::::	chr6:34256144-34256442(-)$1	298	14	289	375.0000
:::::eeeee####ccc"""bbnnnnnbb]ccc7777777eeeee:::::::::::::::::::::::a[ffffff!!ffffff####dddduuuuuuuuuuuuddddffffff55555ffffff]a:ffffff!!bb[bbffffff"""bb[dddd!!bb[bb"""ccchhhhhhhhccc[ccc!!gggggggvvvvvvvvvvvvvggggggg22ccc]ccc55555hhhhhhhh333ccc22bbbb]dddd]bb333ffffff22bb]bb22f	chr16:71765804-71766159(-)$1	355	38	313	375.0000

#DB
....(((((((.((.((((((((((((((((((.(........(((((((...........)))))))).)))))))))).))))...((((.(((((((((..(((.(.(((..((((..((((....))))))))..)).).).)))..)))))))))...))))(((((....)))))......))))..)).)))))))......)))).)..))))...........(((((....))))).............................	chr6:34256144-34256442(-)$1	1	14	289	375.0000
.....(((((....(((...((.....)).))).......))))).......................(.((((((..((((((....((((............)))))))))).....)))))).).((((((..((.((((((((...((.((((..((.((...((((((((((((((.(((..(((((((.............)))))))..))).))).....))))))))...)))..)))).)))).))...))))))..)).))..)	chr16:71765804-71766159(-)$1	1	38	313	375.0000

#PSSM
C : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
U : 1.00	
U : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
a : 0.50	C : 0.50	
u : 0.50	G : 0.50	
u : 0.50	U : 0.50	
u : 0.50	U : 0.50	
u : 0.50	U : 0.50	
u : 0.50	G : 0.50	
a : 0.50	A : 0.50	
a : 0.50	A : 0.50	
u : 0.50	U : 0.50	
u : 0.50	U : 0.50	
u : 0.50	C : 0.50	
u : 0.50	C : 0.50	
u : 0.50	U : 0.50	
u : 0.50	U : 0.50	
u : 0.50	C : 0.50	
u : 0.50	U : 0.50	
u : 0.50	A : 0.50	

#score	750.0
#seq	2
#width	275
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_UTR_m1_run2.nuc.txt

#NT
AAGAAAAAAAA	chr3:160134046-160134300(+)$1	254	86	97	22.5000
AAUAAAAAACU	chrX:106310310-106310558(-)$1	248	165	176	16.5000
aagaaUAAAUG	chr4:174253089-174253320(-)$1	231	82	93	19.5000
aagaaUAAAUG	chr4:174253073-174253289(-)$1	216	51	62	19.5000
AAGGAAAAAAA	chr4:760919-761174(-)$1	255	57	68	19.0000
AAGAAAAGAAA	chr8:97243073-97243372(-)$1	299	56	67	18.5000
AAGAAAAAAAA	chr4:761263-761517(-)$1	254	171	182	22.5000
aacaaaaaagc	chr21:39471289-39471542(-)$1	253	206	217	16.5000
AGGAAUAAAUG	chr17:58326668-58326983(-)$1	315	45	56	15.5000

#otherMatches

#Struct PSSM
ssssssssscc	chr1:241796878-241797149(-)$1	271	9	20	17.0000
JJJ::::::::	chr3:160134046-160134300(+)$1	254	86	97	22.5000
gggg"""cccr	chrX:106310310-106310558(-)$1	248	165	176	16.5000
rrrrrrrrbb3	chr4:174253089-174253320(-)$1	231	82	93	19.5000
rrrrrrrrbb3	chr4:174253073-174253289(-)$1	216	51	62	19.5000
yyeeeee::::	chr4:760919-761174(-)$1	255	57	68	19.0000
ooccc::::::	chr8:97243073-97243372(-)$1	299	56	67	18.5000
gggg666666d	chr4:761263-761517(-)$1	254	171	182	22.5000
&&&&ffffffn	chr21:39471289-39471542(-)$1	253	206	217	16.5000
bqqqqqqqqbb	chr17:58326668-58326983(-)$1	315	45	56	15.5000

#DB
.........))	chr1:241796878-241797149(-)$1	1	9	20	17.0000
(((........	chr3:160134046-160134300(+)$1	1	86	97	22.5000
((((...(((.	chrX:106310310-106310558(-)$1	1	165	176	16.5000
........)).	chr4:174253089-174253320(-)$1	1	82	93	19.5000
........)).	chr4:174253073-174253289(-)$1	1	51	62	19.5000
..)))))....	chr4:760919-761174(-)$1	1	57	68	19.0000
..)))......	chr8:97243073-97243372(-)$1	1	56	67	18.5000
))))......)	chr4:761263-761517(-)$1	1	171	182	22.5000
....((((((.	chr21:39471289-39471542(-)$1	1	206	217	16.5000
(........))	chr17:58326668-58326983(-)$1	1	45	56	15.5000

#PSSM
A : 0.70	a : 0.30	
A : 0.60	a : 0.30	G : 0.10	
G : 0.60	g : 0.20	U : 0.10	c : 0.10	
A : 0.50	a : 0.30	C : 0.10	G : 0.10	
A : 0.70	a : 0.30	
A : 0.60	U : 0.30	a : 0.10	
A : 0.89	a : 0.10	
A : 0.79	G : 0.10	a : 0.10	
A : 0.89	a : 0.10	
A : 0.40	U : 0.30	C : 0.20	g : 0.10	
A : 0.40	G : 0.30	C : 0.10	U : 0.10	c : 0.10	

#score	187.0
#seq	10
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_transcript_m2_run2.nuc.txt

#NT
CCCAG	chr1:17084871-17085175(-)$1	304	1	6	14.9999
CCCAG	chr20:17594585-17594874(-)$1	289	220	225	14.9999
CCCAG	chr9:117052999-117053238(+)$1	239	2	7	14.9999
CCCAG	chr6:30892975-30893257(+)$1	282	32	37	14.9999
CCCAG	chr1:43212039-43212450(-)$1	411	9	14	14.9999
CCCAG	chr16:70696096-70696337(-)$1	241	179	184	14.9999
CCCAG	chr20:61460879-61461117(+)$1	238	53	58	14.9999
CCCAG	chr9:117052466-117052704(+)$1	238	32	37	14.9999
CCCAG	chrX:48678411-48678693(+)$1	282	106	111	14.9999
CCCAG	chr20:60886731-60886938(-)$1	207	93	98	14.9999
CCCAG	chr3:48604284-48604524(-)$1	240	63	68	14.9999
CCCAG	chr21:46925083-46925291(+)$1	208	62	67	14.9999
CCCAG	chr6:30882887-30883111(+)$1	224	17	22	14.9999
CCCAG	chr9:117052403-117052614(+)$1	211	95	100	14.9999
CCCAG	chr3:52022459-52022715(+)$1	256	37	42	14.9999
CCCAG	chr3:52842467-52842680(+)$1	213	95	100	14.9999
CCCAG	chr3:49720173-49720475(+)$1	302	62	67	14.9999
CCCAG	chr7:926105-926362(+)$1	257	26	31	14.9999
CCCAG	chr8:22432453-22432725(+)$1	272	226	231	14.9999
CCCAG	chr8:145151531-145151747(+)$1	216	167	172	14.9999
CCCAG	chr21:47558321-47558569(-)$1	248	167	172	14.9999
CCCAG	chr7:44552465-44552733(-)$1	268	262	267	14.9999
CCCAG	chr21:46897225-46897442(+)$1	217	94	99	14.9999
CCCAG	chr17:46055097-46055378(+)$1	281	173	178	14.9999
CCCAG	chr1:32119101-32119341(-)$1	240	137	142	14.9999
CCCAG	chr2:220074853-220075111(-)$1	258	228	233	14.9999
CCCAG	chr20:33867405-33867642(-)$1	237	225	230	14.9999
CCCAG	chr22:51017754-51017970(-)$1	216	29	34	14.9999
CCCAG	chr3:48602791-48603020(-)$1	229	127	132	14.9999
CCCAG	chr22:22049126-22049428(+)$1	302	163	168	14.9999
CCCAG	chr7:100866853-100867131(+)$1	278	161	166	14.9999
CCCAG	chrX:152935859-152936151(-)$1	292	21	26	14.9999
CCCAG	chr19:1062127-1062354(+)$1	227	38	43	14.9999
CCCAG	chr9:117051422-117051655(+)$1	233	188	193	14.9999
CCCAG	chr9:117063879-117064091(+)$1	212	77	82	14.9999
CCCAG	chr19:50042276-50042500(+)$1	224	29	34	14.9999
CCCAG	chr2:232672560-232672826(+)$1	266	44	49	14.9999
CCCAG	chr17:73566344-73566678(+)$1	334	43	48	14.9999
CCCAG	chr9:117073108-117073355(+)$1	247	6	11	14.9999
CCCAG	chr1:1323291-1323539(-)$1	248	213	218	14.9999
CCCAG	chr19:55603765-55604014(-)$1	249	97	102	14.9999
CCCAG	chr8:145150969-145151195(+)$1	226	209	214	14.9999
CCCAG	chr20:62326427-62326675(+)$1	248	90	95	14.9999
CCCAG	chr9:117052239-117052449(+)$1	210	0	5	14.9999
CCCAG	chr11:65307090-65307426(-)$1	336	322	327	14.9999
CCCAG	chr16:89925473-89925750(+)$1	277	166	171	14.9999
CCCAG	chr7:931883-932156(+)$1	273	84	89	14.9999
CCCAG	chr19:49610952-49611170(+)$1	218	67	72	14.9999
CCCAG	chr21:45217819-45218053(+)$1	234	132	137	14.9999
CCCAG	chr17:40265683-40265908(-)$1	225	43	48	14.9999
CCCAG	chr6:30695750-30696012(-)$1	262	140	145	14.9999
CCCAG	chr11:64975577-64975834(+)$1	257	93	98	14.9999
CCCAG	chr6:109768183-109768479(-)$1	296	193	198	14.9999
CCCAG	chr20:17594731-17594951(-)$1	220	11	16	14.9999
CCCAG	chr9:116930742-116930960(+)$1	218	40	45	14.9999
CCCAG	chr11:71949566-71949800(+)$1	234	117	122	14.9999
CCCAG	chr19:13064181-13064444(+)$1	263	148	153	14.9999
CCCAG	chr1:52263832-52264148(-)$1	316	181	186	14.9999
CCCAG	chr15:42139973-42140283(+)$1	310	195	200	14.9999
CCCAG	chr16:89977386-89977592(+)$1	206	56	61	14.9999
CCCAG	chr17:79865351-79865567(-)$1	216	24	29	14.9999
CCCAG	chr3:48607468-48607708(-)$1	240	38	43	14.9999
CCCAG	chr11:418182-418481(-)$1	299	71	76	14.9999
CCCAG	chr15:34818865-34819139(-)$1	274	263	268	14.9999
CCCAG	chr21:45745940-45746168(+)$1	228	120	125	14.9999

#otherMatches

#Struct PSSM
ppeee	chr6:30893370-30893595(+)$1	225	50	55	14.9999
EEEED	chr1:17084871-17085175(-)$1	304	1	6	14.9999
::::H	chr20:17594585-17594874(-)$1	289	220	225	14.9999
:HHHH	chr9:117052999-117053238(+)$1	239	2	7	14.9999
GGGGG	chr6:30892975-30893257(+)$1	282	32	37	14.9999
BKKJJ	chr1:43212039-43212450(-)$1	411	9	14	14.9999
ggg[c	chr16:70696096-70696337(-)$1	241	179	184	14.9999
hhh::	chr20:61460879-61461117(+)$1	238	53	58	14.9999
dccc[	chr9:117052466-117052704(+)$1	238	32	37	14.9999
oooog	chrX:48678411-48678693(+)$1	282	106	111	14.9999
EEEEE	chr20:60886731-60886938(-)$1	207	93	98	14.9999
::::e	chr3:48604284-48604524(-)$1	240	63	68	14.9999
4444c	chr21:46925083-46925291(+)$1	208	62	67	14.9999
ggggg	chr6:30882887-30883111(+)$1	224	17	22	14.9999
mmmmc	chr9:117052403-117052614(+)$1	211	95	100	14.9999
eee::	chr3:52022459-52022715(+)$1	256	37	42	14.9999
####c	chr3:52842467-52842680(+)$1	213	95	100	14.9999
=====	chr3:49720173-49720475(+)$1	302	62	67	14.9999
meeee	chr7:926105-926362(+)$1	257	26	31	14.9999
ooooa	chr8:22432453-22432725(+)$1	272	226	231	14.9999
=====	chr8:145151531-145151747(+)$1	216	167	172	14.9999
ccc]d	chr21:47558321-47558569(-)$1	248	167	172	14.9999
ZZZBB	chr7:44552465-44552733(-)$1	268	262	267	14.9999
::JJJ	chr21:46897225-46897442(+)$1	217	94	99	14.9999
:gggg	chr17:46055097-46055378(+)$1	281	173	178	14.9999
mbb:c	chr1:32119101-32119341(-)$1	240	137	142	14.9999
eee]=	chr2:220074853-220075111(-)$1	258	228	233	14.9999
CCC}D	chr20:33867405-33867642(-)$1	237	225	230	14.9999
HHHHH	chr22:51017754-51017970(-)$1	216	29	34	14.9999
::::g	chr3:48602791-48603020(-)$1	229	127	132	14.9999
III{D	chr22:22049126-22049428(+)$1	302	163	168	14.9999
d]ccc	chr7:100866853-100867131(+)$1	278	161	166	14.9999
f:::d	chrX:152935859-152936151(-)$1	292	21	26	14.9999
::::g	chr19:1062127-1062354(+)$1	227	38	43	14.9999
ccc:B	chr9:117051422-117051655(+)$1	233	188	193	14.9999
eeeee	chr9:117063879-117064091(+)$1	212	77	82	14.9999
bb!!d	chr19:50042276-50042500(+)$1	224	29	34	14.9999
dddgg	chr2:232672560-232672826(+)$1	266	44	49	14.9999
ALLLD	chr17:73566344-73566678(+)$1	334	43	48	14.9999
ggggp	chr9:117073108-117073355(+)$1	247	6	11	14.9999
bmmmm	chr1:1323291-1323539(-)$1	248	213	218	14.9999
hhh]b	chr19:55603765-55604014(-)$1	249	97	102	14.9999
}BBDD	chr8:145150969-145151195(+)$1	226	209	214	14.9999
::ggg	chr20:62326427-62326675(+)$1	248	90	95	14.9999
::::G	chr9:117052239-117052449(+)$1	210	0	5	14.9999
iii:C	chr11:65307090-65307426(-)$1	336	322	327	14.9999
33ddd	chr16:89925473-89925750(+)$1	277	166	171	14.9999
DDDDB	chr7:931883-932156(+)$1	273	84	89	14.9999
ccc:c	chr19:49610952-49611170(+)$1	218	67	72	14.9999
eeeee	chr21:45217819-45218053(+)$1	234	132	137	14.9999
555cc	chr17:40265683-40265908(-)$1	225	43	48	14.9999
::ddd	chr6:30695750-30696012(-)$1	262	140	145	14.9999
hhhhh	chr11:64975577-64975834(+)$1	257	93	98	14.9999
bb]==	chr6:109768183-109768479(-)$1	296	193	198	14.9999
EMMMM	chr20:17594731-17594951(-)$1	220	11	16	14.9999
G:ddd	chr9:116930742-116930960(+)$1	218	40	45	14.9999
000cc	chr11:71949566-71949800(+)$1	234	117	122	14.9999
vvvvv	chr19:13064181-13064444(+)$1	263	148	153	14.9999
>>>ee	chr1:52263832-52264148(-)$1	316	181	186	14.9999
d"""d	chr15:42139973-42140283(+)$1	310	195	200	14.9999
cqqqq	chr16:89977386-89977592(+)$1	206	56	61	14.9999
fffff	chr17:79865351-79865567(-)$1	216	24	29	14.9999
HH::b	chr3:48607468-48607708(-)$1	240	38	43	14.9999
fffff	chr11:418182-418481(-)$1	299	71	76	14.9999
E}FFF	chr15:34818865-34819139(-)$1	274	263	268	14.9999
333a]	chr21:45745940-45746168(+)$1	228	120	125	14.9999

#DB
..)))	chr6:30893370-30893595(+)$1	1	50	55	14.9999
(((((	chr1:17084871-17085175(-)$1	1	1	6	14.9999
....)	chr20:17594585-17594874(-)$1	1	220	225	14.9999
.((((	chr9:117052999-117053238(+)$1	1	2	7	14.9999
(((((	chr6:30892975-30893257(+)$1	1	32	37	14.9999
(..((	chr1:43212039-43212450(-)$1	1	9	14	14.9999
(((.(	chr16:70696096-70696337(-)$1	1	179	184	14.9999
)))..	chr20:61460879-61461117(+)$1	1	53	58	14.9999
((((.	chr9:117052466-117052704(+)$1	1	32	37	14.9999
....)	chrX:48678411-48678693(+)$1	1	106	111	14.9999
(((((	chr20:60886731-60886938(-)$1	1	93	98	14.9999
....(	chr3:48604284-48604524(-)$1	1	63	68	14.9999
....)	chr21:46925083-46925291(+)$1	1	62	67	14.9999
)))))	chr6:30882887-30883111(+)$1	1	17	22	14.9999
....)	chr9:117052403-117052614(+)$1	1	95	100	14.9999
)))..	chr3:52022459-52022715(+)$1	1	37	42	14.9999
....(	chr3:52842467-52842680(+)$1	1	95	100	14.9999
(((((	chr3:49720173-49720475(+)$1	1	62	67	14.9999
.))))	chr7:926105-926362(+)$1	1	26	31	14.9999
....)	chr8:22432453-22432725(+)$1	1	226	231	14.9999
(((((	chr8:145151531-145151747(+)$1	1	167	172	14.9999
))).)	chr21:47558321-47558569(-)$1	1	167	172	14.9999
...))	chr7:44552465-44552733(-)$1	1	262	267	14.9999
..)))	chr21:46897225-46897442(+)$1	1	94	99	14.9999
.((((	chr17:46055097-46055378(+)$1	1	173	178	14.9999
.)).(	chr1:32119101-32119341(-)$1	1	137	142	14.9999
))).)	chr2:220074853-220075111(-)$1	1	228	233	14.9999
))).)	chr20:33867405-33867642(-)$1	1	225	230	14.9999
(((((	chr22:51017754-51017970(-)$1	1	29	34	14.9999
....(	chr3:48602791-48603020(-)$1	1	127	132	14.9999
(((.(	chr22:22049126-22049428(+)$1	1	163	168	14.9999
).)))	chr7:100866853-100867131(+)$1	1	161	166	14.9999
)...(	chrX:152935859-152936151(-)$1	1	21	26	14.9999
....(	chr19:1062127-1062354(+)$1	1	38	43	14.9999
))).)	chr9:117051422-117051655(+)$1	1	188	193	14.9999
)))))	chr9:117063879-117064091(+)$1	1	77	82	14.9999
((..(	chr19:50042276-50042500(+)$1	1	29	34	14.9999
(((((	chr2:232672560-232672826(+)$1	1	44	49	14.9999
(...(	chr17:73566344-73566678(+)$1	1	43	48	14.9999
((((.	chr9:117073108-117073355(+)$1	1	6	11	14.9999
(....	chr1:1323291-1323539(-)$1	1	213	218	14.9999
))).)	chr19:55603765-55604014(-)$1	1	97	102	14.9999
.))))	chr8:145150969-145151195(+)$1	1	209	214	14.9999
..(((	chr20:62326427-62326675(+)$1	1	90	95	14.9999
....(	chr9:117052239-117052449(+)$1	1	0	5	14.9999
))).)	chr11:65307090-65307426(-)$1	1	322	327	14.9999
..)))	chr16:89925473-89925750(+)$1	1	166	171	14.9999
(((((	chr7:931883-932156(+)$1	1	84	89	14.9999
))).(	chr19:49610952-49611170(+)$1	1	67	72	14.9999
(((((	chr21:45217819-45218053(+)$1	1	132	137	14.9999
...))	chr17:40265683-40265908(-)$1	1	43	48	14.9999
..(((	chr6:30695750-30696012(-)$1	1	140	145	14.9999
)))))	chr11:64975577-64975834(+)$1	1	93	98	14.9999
)).))	chr6:109768183-109768479(-)$1	1	193	198	14.9999
(....	chr20:17594731-17594951(-)$1	1	11	16	14.9999
(.(((	chr9:116930742-116930960(+)$1	1	40	45	14.9999
...))	chr11:71949566-71949800(+)$1	1	117	122	14.9999
.....	chr19:13064181-13064444(+)$1	1	148	153	14.9999
...))	chr1:52263832-52264148(-)$1	1	181	186	14.9999
(...(	chr15:42139973-42140283(+)$1	1	195	200	14.9999
(....	chr16:89977386-89977592(+)$1	1	56	61	14.9999
(((((	chr17:79865351-79865567(-)$1	1	24	29	14.9999
((..(	chr3:48607468-48607708(-)$1	1	38	43	14.9999
)))))	chr11:418182-418481(-)$1	1	71	76	14.9999
).)))	chr15:34818865-34819139(-)$1	1	263	268	14.9999
...).	chr21:45745940-45746168(+)$1	1	120	125	14.9999

#PSSM
C : 0.99	
C : 0.99	
C : 0.99	
A : 0.99	
G : 0.99	

#score	989.9999999999999
#seq	66
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_CDS_m1_run1.nuc.txt

#NT
UUCCUGCCCC	chr1:230841798-230842043(-)$1	245	42	52	12.1428
GCCCUGGAGC	chr1:236228069-236228338(-)$1	269	124	134	11.8750
GCUCGGGCCC	chr19:18499322-18499636(+)$1	314	107	117	11.8750
CCCCUGGCUC	chr1:979613-979852(+)$1	239	36	46	15.1785
UCCCUGGCAC	chr21:46893716-46893959(+)$1	243	218	228	14.5535
UCCCCGGCCU	chr21:46910092-46910343(+)$1	251	127	137	11.0714
CCCCUAUCCC	chr19:6714135-6714359(-)$1	224	31	41	11.0714
UCUCUGGGCC	chr9:116999166-116999409(+)$1	243	0	10	11.1607
gcccgAGCCC	chr2:220408156-220408422(-)$1	266	58	68	11.1607
AGCCUGGCCC	chr3:58084339-58084607(+)$1	268	215	225	15.1785
UCCCUGGCCC	chr4:1808226-1808479(+)$1	253	194	204	18.4821
CCCCUGUCCA	chr9:117005724-117005941(+)$1	217	20	30	11.8750
CCCCUGCCCC	chr9:116997787-116998016(+)$1	229	169	179	15.8928
GCCCUGGGCA	chr10:102112033-102112282(+)$1	249	112	122	12.3214
UACCUGGCUC	chr3:133472368-133472645(+)$1	277	121	131	11.5178
GAUCUGGCCC	chr9:96009765-96010121(+)$1	356	151	161	12.5000
cccAUGGCCC	chr12:57556588-57556830(+)$1	242	32	42	14.2857
CCCCUGAGCC	chr8:145640036-145640325(-)$1	289	17	27	11.8750
GCCCUGCCUC	chr7:45928392-45928671(+)$1	279	48	58	12.9464
AGCCUGUCCC	chr17:64224097-64224346(-)$1	249	30	40	11.8750
CCCCUGGCCC	chr11:75279995-75280319(+)$1	324	41	51	18.8392
ACCCUGGCCU	chr1:230846039-230846274(-)$1	235	101	111	14.5535
CCCCUGUCCA	chr19:6710630-6710890(-)$1	260	106	116	11.8750
AGCCUGGCCC	chr21:46914714-46914929(+)$1	215	37	47	15.1785
CUCCCGGCCC	chr8:11705103-11705347(-)$1	244	62	72	11.6071
UCGCUGGCCG	chr14:23770956-23771175(+)$1	219	79	89	10.5357
GCCCUGGAGC	chr1:236228189-236228456(-)$1	267	242	252	11.8750
CCCCAGGCCC	chr21:46901777-46901997(+)$1	220	103	113	14.8214
gccccgcccc	chr16:3767355-3767612(-)$1	257	20	30	12.7678
GGCCUGGCCC	chr17:76968289-76968551(-)$1	262	17	27	16.6071
GCCCUGGAGC	chr20:39800781-39801023(+)$1	242	90	100	11.8750
UGCCUGGCCU	chr1:230839950-230840183(-)$1	233	32	42	11.9642
UCUCUGGGCC	chr9:116999160-116999366(+)$1	206	6	16	11.1607
GCCCUGCCCA	chr11:67810657-67810935(+)$1	278	154	164	12.9464
CCCCAGGCCC	chr5:176522568-176522810(+)$1	242	34	44	14.8214
GACCUGGCCC	chr20:61460730-61460951(+)$1	221	194	204	16.2500
GGCCUGGCUC	chr1:230845698-230845945(-)$1	247	24	34	12.9464
UCCCUGCCCC	chr20:61458503-61458736(+)$1	233	63	73	15.5357
GCCAUGGCCC	chr8:57906013-57906363(-)$1	350	216	226	15.0000
AUCCUGGCCC	chr19:45411030-45411289(+)$1	259	191	201	14.7321
CCCCUGGCUC	chr7:100285330-100285608(-)$1	278	162	172	15.1785
GCCCUGCUCC	chr7:45928320-45928592(+)$1	272	23	33	12.5892
CCCCUGCCCC	chr9:116997816-116998032(+)$1	216	140	150	15.8928
GCCCUGACCC	chr2:220404667-220404930(-)$1	263	121	131	16.1607
GCCCUGACAC	chr6:31996928-31997183(+)$1	255	105	115	12.2321
GCCGUGGGCC	chr17:80196513-80196750(+)$1	237	5	15	11.3392
GCUCUGGCCC	chr20:61463405-61463629(+)$1	224	211	221	15.8035
GCCCGAGCCC	chr21:46897591-46897830(+)$1	239	42	52	11.1607
GCGCUGGCCC	chr9:116840348-116840591(-)$1	243	154	164	15.4464
GCCCUGGCCU	chr1:980520-980757(+)$1	237	203	213	15.9821
CGUCUGGCCC	chr17:79914832-79915049(-)$1	217	80	90	12.1428
ACCCUGGCCU	chr1:230846074-230846329(-)$1	255	156	166	14.5535
AGCCUGGGCC	chr20:61471852-61472059(+)$1	207	95	105	11.6071
CCCCCGGCCC	chr1:983569-983828(+)$1	259	37	47	15.0000
GACCUGGCCC	chr20:61460879-61461132(+)$1	253	45	55	16.2500

#otherMatches

#Struct PSSM
f####dddd[	chr19:45411956-45412298(+)$1	342	239	249	14.6428
4=========	chr1:230841798-230842043(-)$1	245	42	52	12.1428
bbbbdddd[c	chr1:236228069-236228338(-)$1	269	124	134	11.8750
C{FFFFFF{F	chr19:18499322-18499636(+)$1	314	107	117	11.8750
dddda[dddd	chr1:979613-979852(+)$1	239	36	46	15.1785
FFFFFFDDDD	chr21:46893716-46893959(+)$1	243	218	228	14.5535
ggg[bb[ggg	chr21:46910092-46910343(+)$1	251	127	137	11.0714
hhhhh[dddd	chr19:6714135-6714359(-)$1	224	31	41	11.0714
:::ddddqqq	chr9:116999166-116999409(+)$1	243	0	10	11.1607
ggggg22fff	chr2:220408156-220408422(-)$1	266	58	68	11.1607
f:::eeeeea	chr3:58084339-58084607(+)$1	268	215	225	15.1785
:::::CCCGG	chr4:1808226-1808479(+)$1	253	194	204	18.4821
dd"""fffff	chr9:117005724-117005941(+)$1	217	20	30	11.8750
4444ccc333	chr9:116997787-116998016(+)$1	229	169	179	15.8928
g:::FFFFFF	chr10:102112033-102112282(+)$1	249	112	122	12.3214
e::dddd"""	chr3:133472368-133472645(+)$1	277	121	131	11.5178
ddd:JJJJJJ	chr9:96009765-96010121(+)$1	356	151	161	12.5000
DDDD:CCCLL	chr12:57556588-57556830(+)$1	242	32	42	14.2857
gggg::DDDD	chr8:145640036-145640325(-)$1	289	17	27	11.8750
ea[ccc[===	chr7:45928392-45928671(+)$1	279	48	58	12.9464
bb333bb]a]	chr17:64224097-64224346(-)$1	249	30	40	11.8750
HHHHHHHHCC	chr11:75279995-75280319(+)$1	324	41	51	18.8392
!bb!!ccc[d	chr1:230846039-230846274(-)$1	235	101	111	14.5535
qqqqqqqqbb	chr19:6710630-6710890(-)$1	260	106	116	11.8750
KCCC{FFFFF	chr21:46914714-46914929(+)$1	215	37	47	15.1785
FFFF{FFFFF	chr8:11705103-11705347(-)$1	244	62	72	11.6071
ffffff]ccc	chr14:23770956-23771175(+)$1	219	79	89	10.5357
bbbb]bb:::	chr1:236228189-236228456(-)$1	267	242	252	11.8750
bmmmmbbddd	chr21:46901777-46901997(+)$1	220	103	113	14.8214
DDDD{DDDD{	chr16:3767355-3767612(-)$1	257	20	30	12.7678
eeFFFFFFDD	chr17:76968289-76968551(-)$1	262	17	27	16.6071
FFFF}CCCgg	chr20:39800781-39801023(+)$1	242	90	100	11.8750
nnnnnccc::	chr1:230839950-230840183(-)$1	233	32	42	11.9642
CLLLDDDD::	chr9:116999160-116999366(+)$1	206	6	16	11.1607
ddggggggg]	chr11:67810657-67810935(+)$1	278	154	164	12.9464
LLLFFFFFF:	chr5:176522568-176522810(+)$1	242	34	44	14.8214
mmmhhhhhhh	chr20:61460730-61460951(+)$1	221	194	204	16.2500
ffff[bbttt	chr1:230845698-230845945(-)$1	247	24	34	12.9464
:::::ccc[a	chr20:61458503-61458736(+)$1	233	63	73	15.5357
::::::gggg	chr8:57906013-57906363(-)$1	350	216	226	15.0000
D}AFFFFFFC	chr19:45411030-45411289(+)$1	259	191	201	14.7321
d[ffffff[d	chr7:100285330-100285608(-)$1	278	162	172	15.1785
e!!bb[cccm	chr7:45928320-45928592(+)$1	272	23	33	12.5892
4444ccc333	chr9:116997816-116998032(+)$1	216	140	150	15.8928
gqqqqqqqqg	chr2:220404667-220404930(-)$1	263	121	131	16.1607
b!!apppppp	chr6:31996928-31997183(+)$1	255	105	115	12.2321
GG:ffffffc	chr17:80196513-80196750(+)$1	237	5	15	11.3392
===DDDDEEE	chr20:61463405-61463629(+)$1	224	211	221	15.8035
dddd22dddd	chr21:46897591-46897830(+)$1	239	42	52	11.1607
=]bb]fffff	chr9:116840348-116840591(-)$1	243	154	164	15.4464
BBYYEEEEE?	chr1:980520-980757(+)$1	237	203	213	15.9821
DDDD}EEEEE	chr17:79914832-79915049(-)$1	217	80	90	12.1428
!bb!!ccc[d	chr1:230846074-230846329(-)$1	255	156	166	14.5535
]ddddccccc	chr20:61471852-61472059(+)$1	207	95	105	11.6071
bbccc[dddd	chr1:983569-983828(+)$1	259	37	47	15.0000
mmmhhhhhhh	chr20:61460879-61461132(+)$1	253	45	55	16.2500

#DB
(....((((.	chr19:45411956-45412298(+)$1	1	239	249	14.6428
.)))))))))	chr1:230841798-230842043(-)$1	1	42	52	12.1428
))))((((.(	chr1:236228069-236228338(-)$1	1	124	134	11.8750
(.((((((.(	chr19:18499322-18499636(+)$1	1	107	117	11.8750
(((((.((((	chr1:979613-979852(+)$1	1	36	46	15.1785
))))))))))	chr21:46893716-46893959(+)$1	1	218	228	14.5535
(((.((.(((	chr21:46910092-46910343(+)$1	1	127	137	11.0714
(((((.((((	chr19:6714135-6714359(-)$1	1	31	41	11.0714
...((((...	chr9:116999166-116999409(+)$1	1	0	10	11.1607
)))))..)))	chr2:220408156-220408422(-)$1	1	58	68	11.1607
)...((((((	chr3:58084339-58084607(+)$1	1	215	225	15.1785
.....)))))	chr4:1808226-1808479(+)$1	1	194	204	18.4821
((...(((((	chr9:117005724-117005941(+)$1	1	20	30	11.8750
....)))...	chr9:116997787-116998016(+)$1	1	169	179	15.8928
)...((((((	chr10:102112033-102112282(+)$1	1	112	122	12.3214
)..((((...	chr3:133472368-133472645(+)$1	1	121	131	11.5178
))).))))))	chr9:96009765-96010121(+)$1	1	151	161	12.5000
((((.(((..	chr12:57556588-57556830(+)$1	1	32	42	14.2857
))))..((((	chr8:145640036-145640325(-)$1	1	17	27	11.8750
((.(((.(((	chr7:45928392-45928671(+)$1	1	48	58	12.9464
))...)).).	chr17:64224097-64224346(-)$1	1	30	40	11.8750
((((((((((	chr11:75279995-75280319(+)$1	1	41	51	18.8392
.((..(((.(	chr1:230846039-230846274(-)$1	1	101	111	14.5535
........))	chr19:6710630-6710890(-)$1	1	106	116	11.8750
.(((.(((((	chr21:46914714-46914929(+)$1	1	37	47	15.1785
((((.(((((	chr8:11705103-11705347(-)$1	1	62	72	11.6071
)))))).)))	chr14:23770956-23771175(+)$1	1	79	89	10.5357
)))).))...	chr1:236228189-236228456(-)$1	1	242	252	11.8750
(....)))))	chr21:46901777-46901997(+)$1	1	103	113	14.8214
((((.((((.	chr16:3767355-3767612(-)$1	1	20	30	12.7678
))((((((((	chr17:76968289-76968551(-)$1	1	17	27	16.6071
)))).)))((	chr20:39800781-39801023(+)$1	1	90	100	11.8750
.....)))..	chr1:230839950-230840183(-)$1	1	32	42	11.9642
(...((((..	chr9:116999160-116999366(+)$1	1	6	16	11.1607
))))))))).	chr11:67810657-67810935(+)$1	1	154	164	12.9464
...((((((.	chr5:176522568-176522810(+)$1	1	34	44	14.8214
...)))))))	chr20:61460730-61460951(+)$1	1	194	204	16.2500
((((.((...	chr1:230845698-230845945(-)$1	1	24	34	12.9464
.....(((.(	chr20:61458503-61458736(+)$1	1	63	73	15.5357
......((((	chr8:57906013-57906363(-)$1	1	216	226	15.0000
).))))))))	chr19:45411030-45411289(+)$1	1	191	201	14.7321
(.((((((.(	chr7:100285330-100285608(-)$1	1	162	172	15.1785
(..((.(((.	chr7:45928320-45928592(+)$1	1	23	33	12.5892
....)))...	chr9:116997816-116998032(+)$1	1	140	150	15.8928
(........)	chr2:220404667-220404930(-)$1	1	121	131	16.1607
(..(......	chr6:31996928-31997183(+)$1	1	105	115	12.2321
((.(((((((	chr17:80196513-80196750(+)$1	1	5	15	11.3392
))))))))))	chr20:61463405-61463629(+)$1	1	211	221	15.8035
))))..))))	chr21:46897591-46897830(+)$1	1	42	52	11.1607
).)).)))))	chr9:116840348-116840591(-)$1	1	154	164	15.4464
))..))))).	chr1:980520-980757(+)$1	1	203	213	15.9821
)))).)))))	chr17:79914832-79915049(-)$1	1	80	90	12.1428
.((..(((.(	chr1:230846074-230846329(-)$1	1	156	166	14.5535
.)))))))))	chr20:61471852-61472059(+)$1	1	95	105	11.6071
))(((.((((	chr1:983569-983828(+)$1	1	37	47	15.0000
...)))))))	chr20:61460879-61461132(+)$1	1	45	55	16.2500

#PSSM
G : 0.37	C : 0.24	U : 0.19	A : 0.12	g : 0.03	c : 0.01	
C : 0.67	G : 0.14	A : 0.07	U : 0.05	c : 0.05	
C : 0.80	U : 0.10	c : 0.05	G : 0.03	
C : 0.91	c : 0.03	A : 0.03	G : 0.01	
U : 0.83	C : 0.05	G : 0.03	A : 0.03	g : 0.01	c : 0.01	
G : 0.92	A : 0.05	g : 0.01	
G : 0.73	C : 0.12	U : 0.07	A : 0.05	c : 0.01	
C : 0.80	G : 0.10	A : 0.05	c : 0.01	U : 0.01	
C : 0.80	U : 0.08	G : 0.05	A : 0.03	c : 0.01	
C : 0.78	U : 0.08	A : 0.07	G : 0.03	c : 0.01	

#score	760.7142857142862
#seq	56
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_CDS_m1_run2.nuc.txt

#NT
GCU	chr12:100934431-100934699(+)$1	268	50	53	8.9999
GCU	chr1:70687374-70687639(+)$1	265	74	77	8.9999
GCU	chr2:54197690-54197988(-)$1	298	63	66	8.9999
GCU	chr17:39975427-39975697(+)$1	270	59	62	8.9999
GCU	chr14:74759762-74760043(-)$1	281	46	49	8.9999
GCU	chr20:17930883-17931147(-)$1	264	52	55	8.9999
GCU	chr2:233740584-233740872(+)$1	288	56	59	8.9999
GCU	chr2:27720127-27720366(+)$1	239	1	4	8.9999
GCU	chr14:39554916-39555182(-)$1	266	46	49	8.9999
GCU	chr8:618602-618873(-)$1	271	16	19	8.9999
GCU	chr6:158480200-158480483(+)$1	283	75	78	8.9999
gcu	chr1:20811675-20811970(-)$1	295	28	31	8.9999
GCU	chr11:6503271-6503534(+)$1	263	19	22	8.9999
GCU	chr22:38902004-38902249(-)$1	245	17	20	8.9999
GCU	chr19:15508480-15508732(-)$1	252	177	180	8.9999
GCU	chr17:7530780-7531109(-)$1	329	19	22	8.9999
GCU	chr16:15127067-15127357(+)$1	290	91	94	8.9999
GCU	chr1:53370606-53370864(-)$1	258	1	4	8.9999
GCU	chr10:105386791-105387023(-)$1	232	64	67	8.9999
GCU	chr12:132414477-132414768(+)$1	291	103	106	8.9999
GCU	chr20:61594922-61595133(+)$1	211	31	34	8.9999
GCU	chr19:36303178-36303469(-)$1	291	10	13	8.9999
GCU	chr6:7579646-7579956(+)$1	310	1	4	8.9999
GCU	chr11:290938-291233(+)$1	295	21	24	8.9999
GCU	chr20:39791787-39792024(+)$1	237	30	33	8.9999
GCU	chr2:70457789-70458095(-)$1	306	74	77	8.9999
GCU	chr22:46751244-46751589(+)$1	345	3	6	8.9999
GCU	chr20:42086987-42087244(+)$1	257	18	21	8.9999
GCU	chr14:103568401-103568671(+)$1	270	93	96	8.9999
GCU	chr20:3194531-3194794(+)$1	263	0	3	8.9999
GCU	chr2:63058101-63058395(+)$1	294	74	77	8.9999
GCU	chr6:132199584-132199855(+)$1	271	158	161	8.9999
GCU	chr17:45755311-45755539(+)$1	228	18	21	8.9999
GCU	chr1:16891220-16891509(-)$1	289	60	63	8.9999
GCU	chr19:15763262-15763536(+)$1	274	161	164	8.9999
GCU	chr20:39791916-39792143(+)$1	227	4	7	8.9999
GCU	chr6:31698535-31698810(-)$1	275	123	126	8.9999
GCU	chr2:61697693-61697962(-)$1	269	232	235	8.9999
GCU	chr20:61916150-61916384(+)$1	234	31	34	8.9999
GCU	chr3:120363105-120363354(-)$1	249	73	76	8.9999
GCU	chr5:176516793-176517026(+)$1	233	27	30	8.9999
GCU	chr1:146684699-146684996(-)$1	297	94	97	8.9999
GCU	chr13:107211681-107211958(-)$1	277	121	124	8.9999
GCU	chr2:65658939-65659294(-)$1	355	17	20	8.9999
GCU	chr17:79969351-79969576(+)$1	225	3	6	8.9999
GCU	chr20:61594882-61595122(+)$1	240	9	12	8.9999
GCU	chr2:27448985-27449246(+)$1	261	108	111	8.9999
GCU	chr12:7260740-7261023(-)$1	283	17	20	8.9999
GCU	chr21:47565277-47565533(-)$1	256	49	52	8.9999
GCU	chr14:24035133-24035392(-)$1	259	23	26	8.9999
GCU	chr14:103571245-103571495(+)$1	250	42	45	8.9999
GCU	chr16:75270541-75270835(-)$1	294	88	91	8.9999
GCU	chr17:73872319-73872583(-)$1	264	45	48	8.9999
GCU	chr3:48670835-48671078(-)$1	243	31	34	8.9999
GCU	chr6:158475895-158476166(+)$1	271	13	16	8.9999
GCU	chr16:8891663-8891920(+)$1	257	60	63	8.9999
GCU	chr4:1805370-1805601(+)$1	231	11	14	8.9999
GCU	chr12:69218291-69218542(+)$1	251	37	40	8.9999
GCU	chr20:61593940-61594182(+)$1	242	38	41	8.9999
GCU	chr7:1024821-1025053(+)$1	232	7	10	8.9999
GCU	chr9:117062804-117063053(+)$1	249	37	40	8.9999
GCU	chr11:124492743-124493223(+)$1	480	12	15	8.9999
GCU	chr11:129991525-129991804(+)$1	279	14	17	8.9999
GCU	chr1:12677133-12677386(-)$1	253	16	19	8.9999
GCU	chr20:31608086-31608305(+)$1	219	8	11	8.9999
GCU	chr17:79954214-79954484(+)$1	270	53	56	8.9999
GCU	chr3:66023530-66023816(-)$1	286	21	24	8.9999
GCU	chr17:73975010-73975276(-)$1	266	26	29	8.9999
GCU	chr17:45755339-45755557(+)$1	218	135	138	8.9999
gcu	chr12:104332088-104332337(+)$1	249	101	104	8.9999
GCU	chr3:149374545-149374849(-)$1	304	12	15	8.9999
GCU	chr14:70235844-70236083(+)$1	239	7	10	8.9999
GCU	chr12:57499150-57499421(-)$1	271	69	72	8.9999
GCU	chr11:64681220-64681494(-)$1	274	1	4	8.9999
GCU	chr2:54197788-54198046(-)$1	258	121	124	8.9999
GCU	chr6:31914702-31914960(+)$1	258	174	177	8.9999
GCU	chr3:183882549-183882851(+)$1	302	17	20	8.9999
GCU	chr20:4843382-4843647(-)$1	265	15	18	8.9999
GCU	chr17:79969318-79969551(+)$1	233	36	39	8.9999
GCU	chr11:70644448-70644751(-)$1	303	59	62	8.9999
GCU	chr6:31507998-31508221(-)$1	223	21	24	8.9999
GCU	chr3:49051298-49051599(+)$1	301	3	6	8.9999
GCU	chr3:119217535-119217842(+)$1	307	13	16	8.9999
GCU	chr20:34220613-34220899(-)$1	286	18	21	8.9999
GCU	chr12:104341309-104341527(+)$1	218	42	45	8.9999
GCU	chr6:158487527-158487774(+)$1	247	19	22	8.9999
GCU	chr17:7127062-7127296(+)$1	234	3	6	8.9999

#otherMatches

#Struct PSSM
ff]	chr14:23538691-23538929(-)$1	238	40	43	8.9999
JJJ	chr12:100934431-100934699(+)$1	268	50	53	8.9999
c[d	chr1:70687374-70687639(+)$1	265	74	77	8.9999
]cc	chr2:54197690-54197988(-)$1	298	63	66	8.9999
nnn	chr17:39975427-39975697(+)$1	270	59	62	8.9999
eee	chr14:74759762-74760043(-)$1	281	46	49	8.9999
22c	chr20:17930883-17931147(-)$1	264	52	55	8.9999
EEE	chr2:233740584-233740872(+)$1	288	56	59	8.9999
GGG	chr2:27720127-27720366(+)$1	239	1	4	8.9999
:::	chr14:39554916-39555182(-)$1	266	46	49	8.9999
bb[	chr8:618602-618873(-)$1	271	16	19	8.9999
ggg	chr6:158480200-158480483(+)$1	283	75	78	8.9999
FKK	chr1:20811675-20811970(-)$1	295	28	31	8.9999
CC:	chr11:6503271-6503534(+)$1	263	19	22	8.9999
ddd	chr22:38902004-38902249(-)$1	245	17	20	8.9999
FFF	chr19:15508480-15508732(-)$1	252	177	180	8.9999
CCK	chr17:7530780-7531109(-)$1	329	19	22	8.9999
ooo	chr16:15127067-15127357(+)$1	290	91	94	8.9999
BLL	chr1:53370606-53370864(-)$1	258	1	4	8.9999
ebb	chr10:105386791-105387023(-)$1	232	64	67	8.9999
9cc	chr12:132414477-132414768(+)$1	291	103	106	8.9999
ccc	chr20:61594922-61595133(+)$1	211	31	34	8.9999
GGG	chr19:36303178-36303469(-)$1	291	10	13	8.9999
eee	chr6:7579646-7579956(+)$1	310	1	4	8.9999
e!!	chr11:290938-291233(+)$1	295	21	24	8.9999
bb[	chr20:39791787-39792024(+)$1	237	30	33	8.9999
fff	chr2:70457789-70458095(-)$1	306	74	77	8.9999
:::	chr22:46751244-46751589(+)$1	345	3	6	8.9999
EEE	chr20:42086987-42087244(+)$1	257	18	21	8.9999
ccc	chr14:103568401-103568671(+)$1	270	93	96	8.9999
ddd	chr20:3194531-3194794(+)$1	263	0	3	8.9999
ddg	chr2:63058101-63058395(+)$1	294	74	77	8.9999
G::	chr6:132199584-132199855(+)$1	271	158	161	8.9999
GGG	chr17:45755311-45755539(+)$1	228	18	21	8.9999
qdd	chr1:16891220-16891509(-)$1	289	60	63	8.9999
ccc	chr19:15763262-15763536(+)$1	274	161	164	8.9999
[gg	chr20:39791916-39792143(+)$1	227	4	7	8.9999
CCY	chr6:31698535-31698810(-)$1	275	123	126	8.9999
fff	chr2:61697693-61697962(-)$1	269	232	235	8.9999
eee	chr20:61916150-61916384(+)$1	234	31	34	8.9999
D::	chr3:120363105-120363354(-)$1	249	73	76	8.9999
cdd	chr5:176516793-176517026(+)$1	233	27	30	8.9999
c]f	chr1:146684699-146684996(-)$1	297	94	97	8.9999
iii	chr13:107211681-107211958(-)$1	277	121	124	8.9999
FLL	chr2:65658939-65659294(-)$1	355	17	20	8.9999
EEE	chr17:79969351-79969576(+)$1	225	3	6	8.9999
GGG	chr20:61594882-61595122(+)$1	240	9	12	8.9999
F{C	chr2:27448985-27449246(+)$1	261	108	111	8.9999
ddd	chr12:7260740-7261023(-)$1	283	17	20	8.9999
GGG	chr21:47565277-47565533(-)$1	256	49	52	8.9999
[ao	chr14:24035133-24035392(-)$1	259	23	26	8.9999
2dd	chr14:103571245-103571495(+)$1	250	42	45	8.9999
ccc	chr16:75270541-75270835(-)$1	294	88	91	8.9999
2bb	chr17:73872319-73872583(-)$1	264	45	48	8.9999
mmf	chr3:48670835-48671078(-)$1	243	31	34	8.9999
CC{	chr6:158475895-158476166(+)$1	271	13	16	8.9999
333	chr16:8891663-8891920(+)$1	257	60	63	8.9999
d[=	chr4:1805370-1805601(+)$1	231	11	14	8.9999
mmf	chr12:69218291-69218542(+)$1	251	37	40	8.9999
mdd	chr20:61593940-61594182(+)$1	242	38	41	8.9999
FFF	chr7:1024821-1025053(+)$1	232	7	10	8.9999
ccc	chr9:117062804-117063053(+)$1	249	37	40	8.9999
H::	chr11:124492743-124493223(+)$1	480	12	15	8.9999
ddq	chr11:129991525-129991804(+)$1	279	14	17	8.9999
ggf	chr1:12677133-12677386(-)$1	253	16	19	8.9999
bJJ	chr20:31608086-31608305(+)$1	219	8	11	8.9999
ggg	chr17:79954214-79954484(+)$1	270	53	56	8.9999
DDD	chr3:66023530-66023816(-)$1	286	21	24	8.9999
GGG	chr17:73975010-73975276(-)$1	266	26	29	8.9999
EDD	chr17:45755339-45755557(+)$1	218	135	138	8.9999
eee	chr12:104332088-104332337(+)$1	249	101	104	8.9999
{GG	chr3:149374545-149374849(-)$1	304	12	15	8.9999
KFF	chr14:70235844-70236083(+)$1	239	7	10	8.9999
ccc	chr12:57499150-57499421(-)$1	271	69	72	8.9999
:EE	chr11:64681220-64681494(-)$1	274	1	4	8.9999
]cc	chr2:54197788-54198046(-)$1	258	121	124	8.9999
22c	chr6:31914702-31914960(+)$1	258	174	177	8.9999
ddd	chr3:183882549-183882851(+)$1	302	17	20	8.9999
fff	chr20:4843382-4843647(-)$1	265	15	18	8.9999
FMM	chr17:79969318-79969551(+)$1	233	36	39	8.9999
CKK	chr11:70644448-70644751(-)$1	303	59	62	8.9999
ddo	chr6:31507998-31508221(-)$1	223	21	24	8.9999
:cc	chr3:49051298-49051599(+)$1	301	3	6	8.9999
{FF	chr3:119217535-119217842(+)$1	307	13	16	8.9999
ddq	chr20:34220613-34220899(-)$1	286	18	21	8.9999
cc[	chr12:104341309-104341527(+)$1	218	42	45	8.9999
[am	chr6:158487527-158487774(+)$1	247	19	22	8.9999
::f	chr17:7127062-7127296(+)$1	234	3	6	8.9999

#DB
)).	chr14:23538691-23538929(-)$1	1	40	43	8.9999
(((	chr12:100934431-100934699(+)$1	1	50	53	8.9999
(.(	chr1:70687374-70687639(+)$1	1	74	77	8.9999
.))	chr2:54197690-54197988(-)$1	1	63	66	8.9999
...	chr17:39975427-39975697(+)$1	1	59	62	8.9999
)))	chr14:74759762-74760043(-)$1	1	46	49	8.9999
..)	chr20:17930883-17931147(-)$1	1	52	55	8.9999
(((	chr2:233740584-233740872(+)$1	1	56	59	8.9999
(((	chr2:27720127-27720366(+)$1	1	1	4	8.9999
...	chr14:39554916-39555182(-)$1	1	46	49	8.9999
((.	chr8:618602-618873(-)$1	1	16	19	8.9999
(((	chr6:158480200-158480483(+)$1	1	75	78	8.9999
(..	chr1:20811675-20811970(-)$1	1	28	31	8.9999
((.	chr11:6503271-6503534(+)$1	1	19	22	8.9999
(((	chr22:38902004-38902249(-)$1	1	17	20	8.9999
)))	chr19:15508480-15508732(-)$1	1	177	180	8.9999
((.	chr17:7530780-7531109(-)$1	1	19	22	8.9999
...	chr16:15127067-15127357(+)$1	1	91	94	8.9999
(..	chr1:53370606-53370864(-)$1	1	1	4	8.9999
)))	chr10:105386791-105387023(-)$1	1	64	67	8.9999
.))	chr12:132414477-132414768(+)$1	1	103	106	8.9999
(((	chr20:61594922-61595133(+)$1	1	31	34	8.9999
(((	chr19:36303178-36303469(-)$1	1	10	13	8.9999
(((	chr6:7579646-7579956(+)$1	1	1	4	8.9999
(..	chr11:290938-291233(+)$1	1	21	24	8.9999
((.	chr20:39791787-39792024(+)$1	1	30	33	8.9999
(((	chr2:70457789-70458095(-)$1	1	74	77	8.9999
...	chr22:46751244-46751589(+)$1	1	3	6	8.9999
(((	chr20:42086987-42087244(+)$1	1	18	21	8.9999
)))	chr14:103568401-103568671(+)$1	1	93	96	8.9999
(((	chr20:3194531-3194794(+)$1	1	0	3	8.9999
))(	chr2:63058101-63058395(+)$1	1	74	77	8.9999
)..	chr6:132199584-132199855(+)$1	1	158	161	8.9999
(((	chr17:45755311-45755539(+)$1	1	18	21	8.9999
.))	chr1:16891220-16891509(-)$1	1	60	63	8.9999
)))	chr19:15763262-15763536(+)$1	1	161	164	8.9999
.((	chr20:39791916-39792143(+)$1	1	4	7	8.9999
)).	chr6:31698535-31698810(-)$1	1	123	126	8.9999
(((	chr2:61697693-61697962(-)$1	1	232	235	8.9999
(((	chr20:61916150-61916384(+)$1	1	31	34	8.9999
)..	chr3:120363105-120363354(-)$1	1	73	76	8.9999
(((	chr5:176516793-176517026(+)$1	1	27	30	8.9999
).)	chr1:146684699-146684996(-)$1	1	94	97	8.9999
(((	chr13:107211681-107211958(-)$1	1	121	124	8.9999
(..	chr2:65658939-65659294(-)$1	1	17	20	8.9999
(((	chr17:79969351-79969576(+)$1	1	3	6	8.9999
(((	chr20:61594882-61595122(+)$1	1	9	12	8.9999
(.(	chr2:27448985-27449246(+)$1	1	108	111	8.9999
)))	chr12:7260740-7261023(-)$1	1	17	20	8.9999
(((	chr21:47565277-47565533(-)$1	1	49	52	8.9999
.(.	chr14:24035133-24035392(-)$1	1	23	26	8.9999
.))	chr14:103571245-103571495(+)$1	1	42	45	8.9999
)))	chr16:75270541-75270835(-)$1	1	88	91	8.9999
.))	chr17:73872319-73872583(-)$1	1	45	48	8.9999
..)	chr3:48670835-48671078(-)$1	1	31	34	8.9999
((.	chr6:158475895-158476166(+)$1	1	13	16	8.9999
...	chr16:8891663-8891920(+)$1	1	60	63	8.9999
(.(	chr4:1805370-1805601(+)$1	1	11	14	8.9999
..)	chr12:69218291-69218542(+)$1	1	37	40	8.9999
.))	chr20:61593940-61594182(+)$1	1	38	41	8.9999
(((	chr7:1024821-1025053(+)$1	1	7	10	8.9999
(((	chr9:117062804-117063053(+)$1	1	37	40	8.9999
(..	chr11:124492743-124493223(+)$1	1	12	15	8.9999
((.	chr11:129991525-129991804(+)$1	1	14	17	8.9999
(((	chr1:12677133-12677386(-)$1	1	16	19	8.9999
)((	chr20:31608086-31608305(+)$1	1	8	11	8.9999
)))	chr17:79954214-79954484(+)$1	1	53	56	8.9999
(((	chr3:66023530-66023816(-)$1	1	21	24	8.9999
(((	chr17:73975010-73975276(-)$1	1	26	29	8.9999
(((	chr17:45755339-45755557(+)$1	1	135	138	8.9999
)))	chr12:104332088-104332337(+)$1	1	101	104	8.9999
.((	chr3:149374545-149374849(-)$1	1	12	15	8.9999
.((	chr14:70235844-70236083(+)$1	1	7	10	8.9999
)))	chr12:57499150-57499421(-)$1	1	69	72	8.9999
.((	chr11:64681220-64681494(-)$1	1	1	4	8.9999
.))	chr2:54197788-54198046(-)$1	1	121	124	8.9999
..)	chr6:31914702-31914960(+)$1	1	174	177	8.9999
(((	chr3:183882549-183882851(+)$1	1	17	20	8.9999
(((	chr20:4843382-4843647(-)$1	1	15	18	8.9999
(..	chr17:79969318-79969551(+)$1	1	36	39	8.9999
(..	chr11:70644448-70644751(-)$1	1	59	62	8.9999
((.	chr6:31507998-31508221(-)$1	1	21	24	8.9999
.((	chr3:49051298-49051599(+)$1	1	3	6	8.9999
.((	chr3:119217535-119217842(+)$1	1	13	16	8.9999
((.	chr20:34220613-34220899(-)$1	1	18	21	8.9999
((.	chr12:104341309-104341527(+)$1	1	42	45	8.9999
.(.	chr6:158487527-158487774(+)$1	1	19	22	8.9999
..(	chr17:7127062-7127296(+)$1	1	3	6	8.9999

#PSSM
G : 0.97	g : 0.02	
C : 0.97	c : 0.02	
U : 0.97	u : 0.02	

#score	791.9999999999999
#seq	88
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_UTR_m3_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
iiiiiii[ccc!!ccc!!a[ffffff[eeeeepppppppeeeee]ffffff]a22ccc333ccc]iiiiiiiiiHHHHHHHHBBCCCGGGGGGG::cccooooooccc:::::ccc"""ccc[gggggggqqqqqqqqggggggg]ccc]cccGGGGGGG}CCC}BB~~~~HHHHHHHHDDDDDDDDYYHHHHHHHHcccooooooccc:::eeeee[bbqqqqqqqqbb22eeeee::ddddqq	chr10:81074843-81075127(+)$1	284	27	272	735.0000

#DB
(((((((.(((..(((..(.((((((.(((((.......))))).)))))).)..)))...))).)))))))))((((((((((((((((((((..(((......))).....(((...(((.(((((((........))))))).))).)))))))))).))).))....))))))))))))))))..))))))))(((......)))...(((((.((........))..)))))..((((..	chr10:81074843-81075127(+)$1	1	27	272	735.0000

#PSSM
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	

#score	735.0
#seq	1
#width	245
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_UTR_m3_run2.nuc.txt

#NT
GCUG	chrX:153586745-153586983(-)$1	238	16	20	12.0000
GCUG	chrX:153586601-153586823(-)$1	222	27	31	12.0000
GCUG	chr9:134334525-134334803(+)$1	278	119	123	12.0000
GCUG	chr3:184042568-184042794(+)$1	226	54	58	12.0000
GCUG	chr3:184039370-184039628(+)$1	258	235	239	12.0000
GCUG	chr19:10265568-10265814(-)$1	246	137	141	12.0000
GCUG	chr8:48873595-48873854(+)$1	259	32	36	12.0000
GCUG	chr15:59225609-59225929(-)$1	320	0	4	12.0000
GCUG	chr2:96950909-96951143(-)$1	234	162	166	12.0000
GCUG	chr11:209536-209853(+)$1	317	23	27	12.0000
GCUG	chr3:184043024-184043262(+)$1	238	109	113	12.0000
GCUG	chr3:184039486-184039717(+)$1	231	119	123	12.0000
GCUG	chr9:95055842-95056075(-)$1	233	143	147	12.0000
GCUG	chr7:135282733-135282993(+)$1	260	120	124	12.0000
GCUG	chr2:96950824-96951074(-)$1	250	93	97	12.0000
GCUG	chr9:134348894-134349205(+)$1	311	45	49	12.0000
GCUG	chr19:10790415-10790704(+)$1	289	130	134	12.0000
GCUG	chrX:153588059-153588273(-)$1	214	180	184	12.0000
GCUG	chr11:61077670-61077952(-)$1	282	91	95	12.0000
GCUG	chrX:53438896-53439154(-)$1	258	29	33	12.0000
GCUG	chr3:184038317-184038540(+)$1	223	0	4	12.0000
gcug	chr12:124196920-124197193(+)$1	273	6	10	12.0000
GCUG	chr1:6484887-6485232(+)$1	345	93	97	12.0000
GCUG	chr1:52344199-52344445(-)$1	246	62	66	12.0000
GCUG	chr2:102314252-102314514(+)$1	262	187	191	12.0000
GCUG	chr7:135261034-135261262(+)$1	228	30	34	12.0000
GCUG	chr3:184020385-184020637(+)$1	252	135	139	12.0000
GCUG	chr3:33840043-33840329(+)$1	286	19	23	12.0000
GCUG	chr19:10439467-10439888(-)$1	421	69	73	12.0000
GCUG	chr5:154172211-154172456(+)$1	245	218	222	12.0000
GCUG	chr12:64798134-64798387(+)$1	253	103	107	12.0000
GCUG	chr11:67378772-67379072(+)$1	300	116	120	12.0000
GCUG	chr5:131892576-131892900(+)$1	324	13	17	12.0000
GCUG	chr11:61070055-61070280(-)$1	225	58	62	12.0000
GCUG	chr1:52260087-52260371(-)$1	284	1	5	12.0000
GCUG	chr11:4127214-4127475(+)$1	261	130	134	12.0000
GCUG	chr9:123201683-123201950(-)$1	267	115	119	12.0000
GCUG	chrX:153588073-153588298(-)$1	225	205	209	12.0000
GCUG	chrX:40945190-40945455(+)$1	265	183	187	12.0000
GCUG	chr1:220267656-220267922(+)$1	266	93	97	12.0000
GCUG	chr9:139733806-139734038(+)$1	232	57	61	12.0000
GCUG	chr2:231921487-231921795(+)$1	308	188	192	12.0000
GCUG	chr3:184044903-184045133(+)$1	230	131	135	12.0000
GCUG	chr1:220192312-220192521(-)$1	209	6	10	12.0000
GCUG	chr11:9406226-9406493(+)$1	267	78	82	12.0000
GCUG	chr3:193310892-193311239(+)$1	347	18	22	12.0000
GCUG	chr19:49607819-49608070(+)$1	251	1	5	12.0000
GCUG	chr2:178257401-178257773(+)$1	372	15	19	12.0000
GCUG	chr1:220219611-220219835(-)$1	224	219	223	12.0000
GCUG	chr16:24104030-24104276(+)$1	246	14	18	12.0000
GCUG	chr4:122744848-122745149(-)$1	301	116	120	12.0000
GCUG	chr3:184042956-184043174(+)$1	218	177	181	12.0000
GCUG	chr5:154169785-154170024(+)$1	239	38	42	12.0000
GCUG	chr3:184042793-184043002(+)$1	209	139	143	12.0000
GCUG	chr5:137727740-137727997(+)$1	257	61	65	12.0000
GCUG	chr7:158443471-158443722(-)$1	251	57	61	12.0000
GCUG	chr5:5422856-5423209(+)$1	353	236	240	12.0000
GCUG	chr16:89348387-89348647(-)$1	260	146	150	12.0000
GCUG	chr11:11863490-11863754(+)$1	264	10	14	12.0000
GCUG	chr17:38145894-38146166(+)$1	272	172	176	12.0000
GCUG	chr17:26941902-26942174(-)$1	272	109	113	12.0000
GCUG	chr1:156104130-156104388(+)$1	258	110	114	12.0000
GCUG	chrX:153592876-153593126(-)$1	250	28	32	12.0000
GCUG	chrX:153583267-153583516(-)$1	249	39	43	12.0000
gcug	chr10:71075452-71075731(+)$1	279	131	135	12.0000
GCUG	chrX:53440180-53440419(-)$1	239	37	41	12.0000
GCUG	chr8:17780304-17780569(+)$1	265	217	221	12.0000
GCUG	chr19:18942872-18943155(+)$1	283	0	4	12.0000
GCUG	chr11:14515661-14515998(-)$1	337	307	311	12.0000
GCUG	chr17:29553353-29553611(+)$1	258	201	205	12.0000
GCUG	chr3:184039517-184039759(+)$1	242	88	92	12.0000
GCUG	chr6:31750207-31750416(-)$1	209	38	42	12.0000
GCUG	chr10:5951025-5951351(+)$1	326	8	12	12.0000
GCUG	chr19:2151296-2151597(-)$1	301	0	4	12.0000
gcug	chr17:57697369-57697609(+)$1	240	13	17	12.0000
gcug	chr3:47893460-47893737(-)$1	277	111	115	12.0000
GCUG	chr11:14521157-14521387(-)$1	230	17	21	12.0000
gcug	chr1:220219703-220219948(-)$1	245	80	84	12.0000
gcug	chr9:35072316-35072575(-)$1	259	4	8	12.0000
GCUG	chr19:1969670-1969975(+)$1	305	258	262	12.0000
GCUG	chrX:153583335-153583540(-)$1	205	63	67	12.0000
GCUG	chr3:184016936-184017279(+)$1	343	249	253	12.0000

#otherMatches

#Struct PSSM
ccc]	chr8:124408419-124408701(-)$1	282	40	44	12.0000
ccmm	chrX:153586745-153586983(-)$1	238	16	20	12.0000
22ee	chrX:153586601-153586823(-)$1	222	27	31	12.0000
dddd	chr9:134334525-134334803(+)$1	278	119	123	12.0000
ffff	chr3:184042568-184042794(+)$1	226	54	58	12.0000
bb]a	chr3:184039370-184039628(+)$1	258	235	239	12.0000
gggg	chr19:10265568-10265814(-)$1	246	137	141	12.0000
GGGG	chr8:48873595-48873854(+)$1	259	32	36	12.0000
::::	chr15:59225609-59225929(-)$1	320	0	4	12.0000
]ddd	chr2:96950909-96951143(-)$1	234	162	166	12.0000
cccd	chr11:209536-209853(+)$1	317	23	27	12.0000
bb[e	chr3:184043024-184043262(+)$1	238	109	113	12.0000
bb]a	chr3:184039486-184039717(+)$1	231	119	123	12.0000
feee	chr9:95055842-95056075(-)$1	233	143	147	12.0000
:::g	chr7:135282733-135282993(+)$1	260	120	124	12.0000
ccmm	chr2:96950824-96951074(-)$1	250	93	97	12.0000
ddd[	chr9:134348894-134349205(+)$1	311	45	49	12.0000
]ccc	chr19:10790415-10790704(+)$1	289	130	134	12.0000
eeec	chrX:153588059-153588273(-)$1	214	180	184	12.0000
ffff	chr11:61077670-61077952(-)$1	282	91	95	12.0000
dddd	chrX:53438896-53439154(-)$1	258	29	33	12.0000
:::J	chr3:184038317-184038540(+)$1	223	0	4	12.0000
cccc	chr12:124196920-124197193(+)$1	273	6	10	12.0000
cccc	chr1:6484887-6485232(+)$1	345	93	97	12.0000
DJJJ	chr1:52344199-52344445(-)$1	246	62	66	12.0000
====	chr2:102314252-102314514(+)$1	262	187	191	12.0000
lccc	chr7:135261034-135261262(+)$1	228	30	34	12.0000
eee:	chr3:184020385-184020637(+)$1	252	135	139	12.0000
hhhh	chr3:33840043-33840329(+)$1	286	19	23	12.0000
pddd	chr19:10439467-10439888(-)$1	421	69	73	12.0000
eee2	chr5:154172211-154172456(+)$1	245	218	222	12.0000
ffff	chr12:64798134-64798387(+)$1	253	103	107	12.0000
cccd	chr11:67378772-67379072(+)$1	300	116	120	12.0000
=[a[	chr5:131892576-131892900(+)$1	324	13	17	12.0000
ffff	chr11:61070055-61070280(-)$1	225	58	62	12.0000
:EEE	chr1:52260087-52260371(-)$1	284	1	5	12.0000
DDD}	chr11:4127214-4127475(+)$1	261	130	134	12.0000
ZZZF	chr9:123201683-123201950(-)$1	267	115	119	12.0000
b[dd	chrX:153588073-153588298(-)$1	225	205	209	12.0000
gggg	chrX:40945190-40945455(+)$1	265	183	187	12.0000
e333	chr1:220267656-220267922(+)$1	266	93	97	12.0000
HHA{	chr9:139733806-139734038(+)$1	232	57	61	12.0000
dddd	chr2:231921487-231921795(+)$1	308	188	192	12.0000
ffff	chr3:184044903-184045133(+)$1	230	131	135	12.0000
DDDD	chr1:220192312-220192521(-)$1	209	6	10	12.0000
{DDD	chr11:9406226-9406493(+)$1	267	78	82	12.0000
bb[e	chr3:193310892-193311239(+)$1	347	18	22	12.0000
CC:c	chr19:49607819-49608070(+)$1	251	1	5	12.0000
JJJJ	chr2:178257401-178257773(+)$1	372	15	19	12.0000
DDD:	chr1:220219611-220219835(-)$1	224	219	223	12.0000
CCC{	chr16:24104030-24104276(+)$1	246	14	18	12.0000
eeee	chr4:122744848-122745149(-)$1	301	116	120	12.0000
qqqb	chr3:184042956-184043174(+)$1	218	177	181	12.0000
b"""	chr5:154169785-154170024(+)$1	239	38	42	12.0000
ee]c	chr3:184042793-184043002(+)$1	209	139	143	12.0000
#bb[	chr5:137727740-137727997(+)$1	257	61	65	12.0000
IIII	chr7:158443471-158443722(-)$1	251	57	61	12.0000
iiii	chr5:5422856-5423209(+)$1	353	236	240	12.0000
gggg	chr16:89348387-89348647(-)$1	260	146	150	12.0000
JJJJ	chr11:11863490-11863754(+)$1	264	10	14	12.0000
deee	chr17:38145894-38146166(+)$1	272	172	176	12.0000
]ddd	chr17:26941902-26942174(-)$1	272	109	113	12.0000
:ggg	chr1:156104130-156104388(+)$1	258	110	114	12.0000
CC{A	chrX:153592876-153593126(-)$1	250	28	32	12.0000
cccb	chrX:153583267-153583516(-)$1	249	39	43	12.0000
cccd	chr10:71075452-71075731(+)$1	279	131	135	12.0000
cccb	chrX:53440180-53440419(-)$1	239	37	41	12.0000
bfff	chr8:17780304-17780569(+)$1	265	217	221	12.0000
dddd	chr19:18942872-18943155(+)$1	283	0	4	12.0000
eee!	chr11:14515661-14515998(-)$1	337	307	311	12.0000
eecc	chr17:29553353-29553611(+)$1	258	201	205	12.0000
dddd	chr3:184039517-184039759(+)$1	242	88	92	12.0000
]ddd	chr6:31750207-31750416(-)$1	209	38	42	12.0000
"bbm	chr10:5951025-5951351(+)$1	326	8	12	12.0000
ccc[	chr19:2151296-2151597(-)$1	301	0	4	12.0000
CCC{	chr17:57697369-57697609(+)$1	240	13	17	12.0000
]ccc	chr3:47893460-47893737(-)$1	277	111	115	12.0000
c===	chr11:14521157-14521387(-)$1	230	17	21	12.0000
ffff	chr1:220219703-220219948(-)$1	245	80	84	12.0000
CC{B	chr9:35072316-35072575(-)$1	259	4	8	12.0000
DDDD	chr19:1969670-1969975(+)$1	305	258	262	12.0000
i22d	chrX:153583335-153583540(-)$1	205	63	67	12.0000
a[a[	chr3:184016936-184017279(+)$1	343	249	253	12.0000

#DB
))).	chr8:124408419-124408701(-)$1	1	40	44	12.0000
((..	chrX:153586745-153586983(-)$1	1	16	20	12.0000
..))	chrX:153586601-153586823(-)$1	1	27	31	12.0000
((((	chr9:134334525-134334803(+)$1	1	119	123	12.0000
))))	chr3:184042568-184042794(+)$1	1	54	58	12.0000
)).)	chr3:184039370-184039628(+)$1	1	235	239	12.0000
((((	chr19:10265568-10265814(-)$1	1	137	141	12.0000
((((	chr8:48873595-48873854(+)$1	1	32	36	12.0000
....	chr15:59225609-59225929(-)$1	1	0	4	12.0000
.)))	chr2:96950909-96951143(-)$1	1	162	166	12.0000
)))(	chr11:209536-209853(+)$1	1	23	27	12.0000
((.(	chr3:184043024-184043262(+)$1	1	109	113	12.0000
)).)	chr3:184039486-184039717(+)$1	1	119	123	12.0000
))))	chr9:95055842-95056075(-)$1	1	143	147	12.0000
...(	chr7:135282733-135282993(+)$1	1	120	124	12.0000
((..	chr2:96950824-96951074(-)$1	1	93	97	12.0000
(((.	chr9:134348894-134349205(+)$1	1	45	49	12.0000
.)))	chr19:10790415-10790704(+)$1	1	130	134	12.0000
)))(	chrX:153588059-153588273(-)$1	1	180	184	12.0000
))))	chr11:61077670-61077952(-)$1	1	91	95	12.0000
((((	chrX:53438896-53439154(-)$1	1	29	33	12.0000
...(	chr3:184038317-184038540(+)$1	1	0	4	12.0000
((((	chr12:124196920-124197193(+)$1	1	6	10	12.0000
))))	chr1:6484887-6485232(+)$1	1	93	97	12.0000
((((	chr1:52344199-52344445(-)$1	1	62	66	12.0000
))))	chr2:102314252-102314514(+)$1	1	187	191	12.0000
.)))	chr7:135261034-135261262(+)$1	1	30	34	12.0000
))).	chr3:184020385-184020637(+)$1	1	135	139	12.0000
))))	chr3:33840043-33840329(+)$1	1	19	23	12.0000
.)))	chr19:10439467-10439888(-)$1	1	69	73	12.0000
))).	chr5:154172211-154172456(+)$1	1	218	222	12.0000
((((	chr12:64798134-64798387(+)$1	1	103	107	12.0000
((((	chr11:67378772-67379072(+)$1	1	116	120	12.0000
(.(.	chr5:131892576-131892900(+)$1	1	13	17	12.0000
((((	chr11:61070055-61070280(-)$1	1	58	62	12.0000
.(((	chr1:52260087-52260371(-)$1	1	1	5	12.0000
))).	chr11:4127214-4127475(+)$1	1	130	134	12.0000
...)	chr9:123201683-123201950(-)$1	1	115	119	12.0000
(.((	chrX:153588073-153588298(-)$1	1	205	209	12.0000
))))	chrX:40945190-40945455(+)$1	1	183	187	12.0000
)...	chr1:220267656-220267922(+)$1	1	93	97	12.0000
(((.	chr9:139733806-139734038(+)$1	1	57	61	12.0000
))))	chr2:231921487-231921795(+)$1	1	188	192	12.0000
))))	chr3:184044903-184045133(+)$1	1	131	135	12.0000
((((	chr1:220192312-220192521(-)$1	1	6	10	12.0000
.(((	chr11:9406226-9406493(+)$1	1	78	82	12.0000
((.(	chr3:193310892-193311239(+)$1	1	18	22	12.0000
((.(	chr19:49607819-49608070(+)$1	1	1	5	12.0000
((((	chr2:178257401-178257773(+)$1	1	15	19	12.0000
))).	chr1:220219611-220219835(-)$1	1	219	223	12.0000
(((.	chr16:24104030-24104276(+)$1	1	14	18	12.0000
))))	chr4:122744848-122745149(-)$1	1	116	120	12.0000
...)	chr3:184042956-184043174(+)$1	1	177	181	12.0000
(...	chr5:154169785-154170024(+)$1	1	38	42	12.0000
)).)	chr3:184042793-184043002(+)$1	1	139	143	12.0000
.((.	chr5:137727740-137727997(+)$1	1	61	65	12.0000
((((	chr7:158443471-158443722(-)$1	1	57	61	12.0000
((((	chr5:5422856-5423209(+)$1	1	236	240	12.0000
((((	chr16:89348387-89348647(-)$1	1	146	150	12.0000
((((	chr11:11863490-11863754(+)$1	1	10	14	12.0000
))))	chr17:38145894-38146166(+)$1	1	172	176	12.0000
.)))	chr17:26941902-26942174(-)$1	1	109	113	12.0000
.(((	chr1:156104130-156104388(+)$1	1	110	114	12.0000
((.(	chrX:153592876-153593126(-)$1	1	28	32	12.0000
)))(	chrX:153583267-153583516(-)$1	1	39	43	12.0000
)))(	chr10:71075452-71075731(+)$1	1	131	135	12.0000
((((	chrX:53440180-53440419(-)$1	1	37	41	12.0000
))))	chr8:17780304-17780569(+)$1	1	217	221	12.0000
((((	chr19:18942872-18943155(+)$1	1	0	4	12.0000
(((.	chr11:14515661-14515998(-)$1	1	307	311	12.0000
))))	chr17:29553353-29553611(+)$1	1	201	205	12.0000
((((	chr3:184039517-184039759(+)$1	1	88	92	12.0000
.)))	chr6:31750207-31750416(-)$1	1	38	42	12.0000
.((.	chr10:5951025-5951351(+)$1	1	8	12	12.0000
(((.	chr19:2151296-2151597(-)$1	1	0	4	12.0000
(((.	chr17:57697369-57697609(+)$1	1	13	17	12.0000
.)))	chr3:47893460-47893737(-)$1	1	111	115	12.0000
((((	chr11:14521157-14521387(-)$1	1	17	21	12.0000
))))	chr1:220219703-220219948(-)$1	1	80	84	12.0000
((.(	chr9:35072316-35072575(-)$1	1	4	8	12.0000
))))	chr19:1969670-1969975(+)$1	1	258	262	12.0000
)..)	chrX:153583335-153583540(-)$1	1	63	67	12.0000
(.(.	chr3:184016936-184017279(+)$1	1	249	253	12.0000

#PSSM
G : 0.92	g : 0.07	
C : 0.92	c : 0.07	
U : 0.92	u : 0.07	
G : 0.92	g : 0.07	

#score	996.0000000000002
#seq	83
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_UTR_m1_run2.nuc.txt

#NT
GCGGGCGAGAGCGG	chr8:103424379-103424621(-)$1	242	104	118	20.4905
gcgggggaggggcg	chr16:11890640-11890885(-)$1	245	23	37	24.6415
gcggcggaggcggg	chr2:191513652-191513915(+)$1	263	59	73	20.4905
GCCggcgggggcgg	chr17:53499130-53499382(-)$1	252	15	29	20.2075
gcgggggagggggc	chr2:20549951-20550293(-)$1	342	134	148	24.7358
gccggggagcgggg	chr19:3062229-3062530(-)$1	301	74	88	23.2264
GCGGGGGUGUGCGG	chr17:44269847-44270106(-)$1	259	116	130	22.6603
GCUGGGGAgggcgg	chr11:3013163-3013460(-)$1	297	12	26	27.3773
ccgggggaggccgg	chr2:242447635-242447907(-)$1	272	19	33	20.3962
GCCGCGGAUGGCGG	chr9:74979420-74979699(-)$1	279	193	207	18.4150
gccggggcgggugg	chr12:131356575-131356818(+)$1	243	178	192	22.2830
GCUGGGGAGGCGAG	chr20:62330397-62330618(-)$1	221	103	117	19.3584
gcugggGCGGGUGC	chr16:75282012-75282272(-)$1	260	85	99	19.0754
gguggggagggcag	chr1:27022734-27023050(+)$1	316	57	71	19.7358
GUUGCGGGGGGCGG	chr6:30710344-30710581(-)$1	237	99	113	17.0943
gcgggggagggcgc	chr18:45456860-45457121(-)$1	261	14	28	24.7358
GCCGGGCCGGGCGG	chr10:43892137-43892428(-)$1	291	219	233	20.0188
GCGGGGGAGGGGGC	chr17:27072351-27072600(+)$1	249	170	184	24.7358
GCCGGGGCAGGCGG	chr19:1104601-1104871(+)$1	270	184	198	20.5849
GGUGGGGAGGGGGG	chr5:92920301-92920549(+)$1	248	27	41	23.6981
GCUGGGGAGGGGGG	chr1:38274022-38274309(+)$1	287	0	14	27.3773
gcugggggcugcgg	chr3:176914158-176914414(-)$1	256	82	96	17.6603
GCAGGGGCGGGCGG	chr12:6643814-6644070(+)$1	256	37	51	23.9811
GUGGGGGAGGGCGC	chr17:7477102-7477310(+)$1	208	24	38	20.6792
GCGGGUGGGGGCGG	chr13:45914973-45915237(-)$1	264	110	124	22.2830
gcuggggcgggcgg	chr8:8243852-8244099(-)$1	247	72	86	25.2075
gcGGGGGAGGCGGG	chr20:57267787-57268055(+)$1	268	36	50	24.6415
gcgggggaggggcg	chr3:195635687-195635941(-)$1	254	202	216	24.6415
gcccgggugggggg	chr12:58005524-58005834(+)$1	310	119	133	19.9245
GCGGGACAGGGCGG	chr19:1478878-1479174(-)$1	296	140	154	19.8301
gggcgggagggcgg	chr17:36955687-36955938(-)$1	251	75	89	20.7735
ccgggggaggggag	chr20:62338443-62338694(-)$1	251	190	204	20.4905
GCGGGGGUUGGGGG	chr19:56185588-56185846(+)$1	258	2	16	22.1886
gcggggggaggcgg	chr5:176873702-176874003(-)$1	301	121	135	22.7547
gcggggcggggagg	chr19:42788118-42788375(+)$1	257	92	106	19.9245
ggaggggagugggg	chr9:35690609-35690869(-)$1	260	58	72	18.8867
GCUGGGGGGCGCCG	chr20:57467330-57467613(+)$1	283	114	128	17.8490
GCGGAGGAAGGCGG	chr5:179921609-179921883(+)$1	274	127	141	20.3962
UCGGGGGCGGGGGG	chr17:55162983-55163232(+)$1	249	101	115	22.1886
gcggcggggggcgg	chr1:2160039-2160323(+)$1	284	46	60	22.4716
gcGGGGGAGGCGGG	chr20:57267709-57267987(+)$1	278	114	128	24.6415
GCGGGGGUGGGGGG	chr19:2272816-2273083(+)$1	267	88	102	26.2452
GGUGGGGUGGGGGG	chr19:42751773-42752020(-)$1	247	187	201	21.2452
gcUGGGGAAGGGGG	chr14:32546344-32546626(+)$1	282	1	15	23.5094
GCGCGGGAGCGGGG	chr12:131356824-131357101(+)$1	277	235	249	21.0566
cguggggcgggcgg	chrX:20284769-20284985(-)$1	216	181	195	17.2830
GCGGGGGAGCGGGG	chr4:38666284-38666547(+)$1	263	68	82	25.3018
GCGCGGGAGCGGGG	chr12:131356942-131357208(+)$1	266	117	131	21.0566
gcgggggaggggag	chr1:245026236-245026527(-)$1	291	162	176	24.7358
gcgggggagggggu	chr17:7311430-7311681(+)$1	251	190	204	24.3584
GCUGGUGAGUGCGG	chr10:124134265-124134522(+)$1	257	208	222	19.4528
GCUgggggccgcgg	chr7:29234364-29234612(+)$1	248	96	110	17.8490

#otherMatches

#Struct PSSM
f:============	chr17:38334271-38334518(+)$1	247	182	196	24.3584
FFFFF{CCC{CCC:	chr8:103424379-103424621(-)$1	242	104	118	20.4905
B{JJJJJJJJJJ{E	chr16:11890640-11890885(-)$1	245	23	37	24.6415
cc[dddd[eeeee[	chr2:191513652-191513915(+)$1	263	59	73	20.4905
ccc]cccDDDDEEE	chr17:53499130-53499382(-)$1	252	15	29	20.2075
cccssssssssssc	chr2:20549951-20550293(-)$1	342	134	148	24.7358
eeeeebb]dddd33	chr19:3062229-3062530(-)$1	301	74	88	23.2264
ddFFFFFF{FFFFF	chr17:44269847-44270106(-)$1	259	116	130	22.6603
JJJJJJ{BB:ccc[	chr11:3013163-3013460(-)$1	297	12	26	27.3773
ddoooooodddd]a	chr2:242447635-242447907(-)$1	272	19	33	20.3962
eeeeennnnneeee	chr9:74979420-74979699(-)$1	279	193	207	18.4150
EEEEE}EEEEE}A:	chr12:131356575-131356818(+)$1	243	178	192	22.2830
ccHHHHHHHHBB:c	chr20:62330397-62330618(-)$1	221	103	117	19.3584
ooooooeeeee]bb	chr16:75282012-75282272(-)$1	260	85	99	19.0754
a[aooooooa]a]g	chr1:27022734-27023050(+)$1	316	57	71	19.7358
GDDDD:::JJJJJJ	chr6:30710344-30710581(-)$1	237	99	113	17.0943
B{IIIIIIIII::g	chr18:45456860-45457121(-)$1	261	14	28	24.7358
eeeeeeeggggggg	chr10:43892137-43892428(-)$1	291	219	233	20.0188
eeJJJJJJJJJJJJ	chr17:27072351-27072600(+)$1	249	170	184	24.7358
eee]a]bb22bb]f	chr19:1104601-1104871(+)$1	270	184	198	20.5849
DDDDMMMMAKKABB	chr5:92920301-92920549(+)$1	248	27	41	23.6981
:FFFFFFKKEEEEE	chr1:38274022-38274309(+)$1	287	0	14	27.3773
ddd[aooooooa]d	chr3:176914158-176914414(-)$1	256	82	96	17.6603
ddmmmmddddgggg	chr12:6643814-6644070(+)$1	256	37	51	23.9811
EEEEEMMMMCCC{C	chr17:7477102-7477310(+)$1	208	24	38	20.6792
gggg::HHHHHHHH	chr13:45914973-45915237(-)$1	264	110	124	22.2830
DDDDGGGGGGGeee	chr8:8243852-8244099(-)$1	247	72	86	25.2075
ffffff333=====	chr20:57267787-57268055(+)$1	268	36	50	24.6415
:EEEEEYYHHHHHH	chr3:195635687-195635941(-)$1	254	202	216	24.6415
b]adddd]cccccc	chr12:58005524-58005834(+)$1	310	119	133	19.9245
FFF{CCC{EEEEE:	chr19:1478878-1479174(-)$1	296	140	154	19.8301
EJJJJJJJJJJ{FF	chr17:36955687-36955938(-)$1	251	75	89	20.7735
bcccbb22bb333e	chr20:62338443-62338694(-)$1	251	190	204	20.4905
CC:DDDDKKFFFFF	chr19:56185588-56185846(+)$1	258	2	16	22.1886
g]ccc22a]fffff	chr5:176873702-176874003(-)$1	301	121	135	22.7547
bb[ggggggg"""c	chr19:42788118-42788375(+)$1	257	92	106	19.9245
qqqqqqqqccc]aG	chr9:35690609-35690869(-)$1	260	58	72	18.8867
]bb::::::ddddn	chr20:57467330-57467613(+)$1	283	114	128	17.8490
[bbqqqqqqqqbb]	chr5:179921609-179921883(+)$1	274	127	141	20.3962
33ddddffffffee	chr17:55162983-55163232(+)$1	249	101	115	22.1886
mmmmccc333gggg	chr1:2160039-2160323(+)$1	284	46	60	22.4716
ffffff333=====	chr20:57267709-57267987(+)$1	278	114	128	24.6415
hhhhhbb]ddddii	chr19:2272816-2273083(+)$1	267	88	102	26.2452
A}JJJJJJJJJJJJ	chr19:42751773-42752020(-)$1	247	187	201	21.2452
[bbnnnnnbb]a::	chr14:32546344-32546626(+)$1	282	1	15	23.5094
]a22hhhhhhhhee	chr12:131356824-131357101(+)$1	277	235	249	21.0566
]ddddcccBB}FFF	chrX:20284769-20284985(-)$1	216	181	195	17.2830
dddd[a!!eeeeec	chr4:38666284-38666547(+)$1	263	68	82	25.3018
ee]dddd:ccc[dd	chr12:131356942-131357208(+)$1	266	117	131	21.0566
[ammmma]ccc22d	chr1:245026236-245026527(-)$1	291	162	176	24.7358
//JJJJJJJJJJJJ	chr17:7311430-7311681(+)$1	251	190	204	24.3584
[cccpppppppccc	chr10:124134265-124134522(+)$1	257	208	222	19.4528
eeeeeffffff[a[	chr7:29234364-29234612(+)$1	248	96	110	17.8490

#DB
).((((((((((((	chr17:38334271-38334518(+)$1	1	182	196	24.3584
(((((.(((.(((.	chr8:103424379-103424621(-)$1	1	104	118	20.4905
(.((((((((((.(	chr16:11890640-11890885(-)$1	1	23	37	24.6415
((.((((.(((((.	chr2:191513652-191513915(+)$1	1	59	73	20.4905
))).)))(((((((	chr17:53499130-53499382(-)$1	1	15	29	20.2075
(((..........)	chr2:20549951-20550293(-)$1	1	134	148	24.7358
))))))).))))..	chr19:3062229-3062530(-)$1	1	74	88	23.2264
))((((((.(((((	chr17:44269847-44270106(-)$1	1	116	130	22.6603
((((((.((.(((.	chr11:3013163-3013460(-)$1	1	12	26	27.3773
((......)))).)	chr2:242447635-242447907(-)$1	1	19	33	20.3962
(((((.....))))	chr9:74979420-74979699(-)$1	1	193	207	18.4150
))))).))))).).	chr12:131356575-131356818(+)$1	1	178	192	22.2830
)))))))))))).(	chr20:62330397-62330618(-)$1	1	103	117	19.3584
......))))).))	chr16:75282012-75282272(-)$1	1	85	99	19.0754
(.(......).).)	chr1:27022734-27023050(+)$1	1	57	71	19.7358
)))))...((((((	chr6:30710344-30710581(-)$1	1	99	113	17.0943
(.(((((((((..(	chr18:45456860-45457121(-)$1	1	14	28	24.7358
))))))))))))))	chr10:43892137-43892428(-)$1	1	219	233	20.0188
))))))))))))))	chr17:27072351-27072600(+)$1	1	170	184	24.7358
))).).))..)).)	chr19:1104601-1104871(+)$1	1	184	198	20.5849
((((....(..(((	chr5:92920301-92920549(+)$1	1	27	41	23.6981
.((((((..(((((	chr1:38274022-38274309(+)$1	1	0	14	27.3773
(((.(......).)	chr3:176914158-176914414(-)$1	1	82	96	17.6603
((....))))))))	chr12:6643814-6644070(+)$1	1	37	51	23.9811
(((((....(((.(	chr17:7477102-7477310(+)$1	1	24	38	20.6792
))))..))))))))	chr13:45914973-45915237(-)$1	1	110	124	22.2830
((((((((((((((	chr8:8243852-8244099(-)$1	1	72	86	25.2075
))))))...)))))	chr20:57267787-57268055(+)$1	1	36	50	24.6415
.)))))..))))))	chr3:195635687-195635941(-)$1	1	202	216	24.6415
).))))).))))))	chr12:58005524-58005834(+)$1	1	119	133	19.9245
(((.(((.(((((.	chr19:1478878-1479174(-)$1	1	140	154	19.8301
(((((((((((.((	chr17:36955687-36955938(-)$1	1	75	89	20.7735
))))))..))...)	chr20:62338443-62338694(-)$1	1	190	204	20.4905
((.((((..(((((	chr19:56185588-56185846(+)$1	1	2	16	22.1886
).)))..).)))))	chr5:176873702-176874003(-)$1	1	121	135	22.7547
((.(((((((...(	chr19:42788118-42788375(+)$1	1	92	106	19.9245
........))).)(	chr9:35690609-35690869(-)$1	1	58	72	18.8867
.))......((((.	chr20:57467330-57467613(+)$1	1	114	128	17.8490
.((........)).	chr5:179921609-179921883(+)$1	1	127	141	20.3962
..))))((((((((	chr17:55162983-55163232(+)$1	1	101	115	22.1886
....)))...))))	chr1:2160039-2160323(+)$1	1	46	60	22.4716
))))))...)))))	chr20:57267709-57267987(+)$1	1	114	128	24.6415
))))))).))))))	chr19:2272816-2273083(+)$1	1	88	102	26.2452
).))))))))))))	chr19:42751773-42752020(-)$1	1	187	201	21.2452
.((.....)).)..	chr14:32546344-32546626(+)$1	1	1	15	23.5094
.)..))))))))))	chr12:131356824-131357101(+)$1	1	235	249	21.0566
.))))))))).)))	chrX:20284769-20284985(-)$1	1	181	195	17.2830
((((.(..((((((	chr4:38666284-38666547(+)$1	1	68	82	25.3018
)).)))).(((.((	chr12:131356942-131357208(+)$1	1	117	131	21.0566
.(....).)))..)	chr1:245026236-245026527(-)$1	1	162	176	24.7358
..))))))))))))	chr17:7311430-7311681(+)$1	1	190	204	24.3584
.(((.......)))	chr10:124134265-124134522(+)$1	1	208	222	19.4528
(((((((((((.(.	chr7:29234364-29234612(+)$1	1	96	110	17.8490

#PSSM
G : 0.49	g : 0.41	c : 0.05	U : 0.03	
C : 0.45	c : 0.39	g : 0.07	U : 0.03	G : 0.03	
G : 0.30	g : 0.24	U : 0.18	u : 0.09	C : 0.07	c : 0.05	A : 0.01	a : 0.01	
G : 0.50	g : 0.41	c : 0.03	C : 0.03	
G : 0.49	g : 0.41	c : 0.03	C : 0.03	A : 0.01	
G : 0.47	g : 0.43	U : 0.03	C : 0.01	c : 0.01	A : 0.01	
G : 0.52	g : 0.41	C : 0.03	c : 0.01	
A : 0.33	a : 0.24	g : 0.11	C : 0.09	U : 0.07	c : 0.05	G : 0.05	u : 0.01	
G : 0.45	g : 0.39	A : 0.05	U : 0.03	c : 0.03	a : 0.01	
G : 0.41	g : 0.37	C : 0.07	c : 0.03	U : 0.03	u : 0.03	A : 0.01	
G : 0.49	g : 0.41	C : 0.05	c : 0.03	
G : 0.28	C : 0.24	c : 0.22	g : 0.18	u : 0.01	U : 0.01	a : 0.01	
G : 0.50	g : 0.35	a : 0.05	c : 0.03	A : 0.01	C : 0.01	
G : 0.49	g : 0.39	C : 0.05	c : 0.03	u : 0.01	

#score	1159.2075471698106
#seq	53
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_transcript_m1_run1.nuc.txt

#NT
CAGG	chr1:35915402-35915723(-)$1	321	62	66	11.9999
CAGG	chr7:931943-932198(+)$1	255	130	134	11.9999
CAGG	chr17:4722532-4722839(+)$1	307	6	10	11.9999
CAGG	chr6:32139182-32139445(-)$1	263	55	59	11.9999
CAGG	chr2:28627077-28627361(+)$1	284	129	133	11.9999
CAGG	chr20:47538442-47538684(+)$1	242	82	86	11.9999
CAGG	chr16:30992239-30992511(+)$1	272	6	10	11.9999
CAGG	chr16:16283909-16284122(-)$1	213	24	28	11.9999
CAGG	chr17:2597720-2597998(-)$1	278	117	121	11.9999
CAGG	chr22:38506374-38506582(-)$1	208	76	80	11.9999
CAGG	chr3:133494140-133494415(+)$1	275	43	47	11.9999
CAGG	chr18:21116712-21116988(-)$1	276	53	57	11.9999
CAGG	chr17:73895099-73895342(-)$1	243	146	150	11.9999
CAGG	chr9:137020427-137020632(+)$1	205	79	83	11.9999
CAGG	chr3:58090695-58090930(+)$1	235	11	15	11.9999
CAGG	chr19:2434168-2434433(-)$1	265	10	14	11.9999
CAGG	chr1:228288979-228289333(-)$1	354	171	175	11.9999
CAGG	chr20:61438843-61439090(+)$1	247	55	59	11.9999
CAGG	chr16:88767708-88767976(-)$1	268	130	134	11.9999
CAGG	chr9:86586058-86586289(-)$1	231	15	19	11.9999
CAGG	chr19:49993735-49993958(+)$1	223	119	123	11.9999
CAGG	chr9:139686558-139686810(+)$1	252	21	25	11.9999
CAGG	chr2:224822290-224822508(+)$1	218	104	108	11.9999
CAGG	chr17:80009028-80009250(-)$1	222	74	78	11.9999
CAGG	chr12:50151851-50152142(+)$1	291	204	208	11.9999
CAGG	chr1:44442800-44443027(+)$1	227	85	89	11.9999
CAGG	chr20:45035004-45035287(-)$1	283	73	77	11.9999
cagg	chr16:50663951-50664190(+)$1	239	10	14	11.9999
CAGG	chr5:891129-891370(-)$1	241	98	102	11.9999
CAGG	chr12:53854826-53855064(+)$1	238	110	114	11.9999
CAGG	chr6:30711890-30712141(-)$1	251	34	38	11.9999
CAGG	chr1:154988553-154988821(+)$1	268	5	9	11.9999
CAGG	chr9:139266408-139266702(-)$1	294	114	118	11.9999
Cagg	chr19:35500285-35500513(+)$1	228	116	120	11.9999
CAGG	chr16:2048466-2048763(-)$1	297	44	48	11.9999
CAGG	chr16:2820159-2820470(+)$1	311	111	115	11.9999
CAGG	chr6:160183708-160183948(+)$1	240	98	102	11.9999
CAGG	chr14:102698838-102699092(-)$1	254	44	48	11.9999
CAGG	chr3:38173272-38173526(-)$1	254	88	92	11.9999
CAGG	chr1:1256234-1256476(-)$1	242	11	15	11.9999
CAGG	chr3:15093847-15094073(-)$1	226	39	43	11.9999
CAGG	chr15:101933517-101933785(-)$1	268	153	157	11.9999
CAGG	chr12:122622742-122623040(+)$1	298	127	131	11.9999
CAGG	chr19:4363229-4363468(-)$1	239	4	8	11.9999
CAGG	chr20:60699517-60699779(+)$1	262	97	101	11.9999
CAGG	chr22:42910541-42910791(-)$1	250	214	218	11.9999
CAGG	chr1:146742470-146742716(+)$1	246	119	123	11.9999
CAGG	chr19:1255578-1255835(+)$1	257	78	82	11.9999
CAGG	chr19:6419133-6419421(-)$1	288	2	6	11.9999
CAGG	chr5:42808326-42808581(-)$1	255	38	42	11.9999
cagg	chr5:132202617-132202867(+)$1	250	199	203	11.9999
CAGG	chr17:42400038-42400308(-)$1	270	150	154	11.9999
CAGG	chr7:23545697-23545984(-)$1	287	225	229	11.9999
CAGG	chr14:31061374-31061710(+)$1	336	4	8	11.9999
CAGG	chr12:7074935-7075224(-)$1	289	142	146	11.9999
CAGG	chr1:28834570-28834824(+)$1	254	66	70	11.9999
CAGG	chr16:88783534-88783791(-)$1	257	69	73	11.9999
CAGG	chr20:44525409-44525681(+)$1	272	267	271	11.9999
CAGG	chr20:61300329-61300542(+)$1	213	11	15	11.9999
CAGG	chr1:155281863-155282159(+)$1	296	179	183	11.9999
CAGG	chr5:170837424-170837658(+)$1	234	103	107	11.9999
CAGG	chr19:2222436-2222705(+)$1	269	33	37	11.9999
CAGG	chr17:7155800-7156152(+)$1	352	46	50	11.9999
CAGG	chr3:133472277-133472527(+)$1	250	25	29	11.9999
CAGG	chr19:12057897-12058143(+)$1	246	95	99	11.9999
CAGG	chr19:1253811-1254059(+)$1	248	97	101	11.9999
CAGG	chr17:80048621-80048859(-)$1	238	99	103	11.9999
CAGG	chr3:52028011-52028258(-)$1	247	61	65	11.9999
CAGG	chr17:20922261-20922504(-)$1	243	148	152	11.9999
CAGG	chr17:73895001-73895289(-)$1	288	93	97	11.9999
CAGG	chr1:21072010-21072258(-)$1	248	29	33	11.9999
CAGG	chr19:49484757-49485093(-)$1	336	65	69	11.9999
CAGG	chr1:156714843-156715107(-)$1	264	122	126	11.9999
CAGG	chr2:198364398-198364606(-)$1	208	98	102	11.9999
cagg	chrX:152954178-152954441(+)$1	263	149	153	11.9999
CAGG	chr2:220079547-220079789(-)$1	242	145	149	11.9999
CAGG	chr2:136718925-136719172(-)$1	247	101	105	11.9999
CAGG	chr19:3980377-3980600(-)$1	223	23	27	11.9999
CAGG	chr3:5248677-5248962(+)$1	285	157	161	11.9999
CAGG	chr17:78968663-78968945(+)$1	282	112	116	11.9999
CAGG	chr7:5354464-5354699(-)$1	235	31	35	11.9999
CAGG	chr10:114912045-114912319(+)$1	274	224	228	11.9999
CAGG	chr6:31603050-31603304(+)$1	254	117	121	11.9999
CAGG	chr1:55340785-55341041(-)$1	256	10	14	11.9999
CAGG	chr1:1602937-1603189(-)$1	252	100	104	11.9999
cagg	chr7:56124008-56124239(+)$1	231	191	195	11.9999
CAGG	chr20:62659819-62660057(+)$1	238	8	12	11.9999

#otherMatches

#Struct PSSM
cccm	chr2:101622261-101622486(+)$1	225	17	21	11.9999
cooo	chr1:35915402-35915723(-)$1	321	62	66	11.9999
ee[a	chr7:931943-932198(+)$1	255	130	134	11.9999
A:::	chr17:4722532-4722839(+)$1	307	6	10	11.9999
dccc	chr6:32139182-32139445(-)$1	263	55	59	11.9999
c]bb	chr2:28627077-28627361(+)$1	284	129	133	11.9999
44ee	chr20:47538442-47538684(+)$1	242	82	86	11.9999
DDD{	chr16:30992239-30992511(+)$1	272	6	10	11.9999
ffff	chr16:16283909-16284122(-)$1	213	24	28	11.9999
d::d	chr17:2597720-2597998(-)$1	278	117	121	11.9999
b]ff	chr22:38506374-38506582(-)$1	208	76	80	11.9999
eecc	chr3:133494140-133494415(+)$1	275	43	47	11.9999
CC{G	chr18:21116712-21116988(-)$1	276	53	57	11.9999
fddd	chr17:73895099-73895342(-)$1	243	146	150	11.9999
feee	chr9:137020427-137020632(+)$1	205	79	83	11.9999
!ccc	chr3:58090695-58090930(+)$1	235	11	15	11.9999
::::	chr19:2434168-2434433(-)$1	265	10	14	11.9999
eee5	chr1:228288979-228289333(-)$1	354	171	175	11.9999
NNNE	chr20:61438843-61439090(+)$1	247	55	59	11.9999
c]ee	chr16:88767708-88767976(-)$1	268	130	134	11.9999
cccc	chr9:86586058-86586289(-)$1	231	15	19	11.9999
]hhh	chr19:49993735-49993958(+)$1	223	119	123	11.9999
&&bb	chr9:139686558-139686810(+)$1	252	21	25	11.9999
d]gg	chr2:224822290-224822508(+)$1	218	104	108	11.9999
eeee	chr17:80009028-80009250(-)$1	222	74	78	11.9999
FFFF	chr12:50151851-50152142(+)$1	291	204	208	11.9999
dccc	chr1:44442800-44443027(+)$1	227	85	89	11.9999
HHHH	chr20:45035004-45035287(-)$1	283	73	77	11.9999
[ddd	chr16:50663951-50664190(+)$1	239	10	14	11.9999
cbbc	chr5:891129-891370(-)$1	241	98	102	11.9999
f"""	chr12:53854826-53855064(+)$1	238	110	114	11.9999
B{FF	chr6:30711890-30712141(-)$1	251	34	38	11.9999
EEEE	chr1:154988553-154988821(+)$1	268	5	9	11.9999
gggd	chr9:139266408-139266702(-)$1	294	114	118	11.9999
dddg	chr19:35500285-35500513(+)$1	228	116	120	11.9999
fff#	chr16:2048466-2048763(-)$1	297	44	48	11.9999
{CCC	chr16:2820159-2820470(+)$1	311	111	115	11.9999
cddd	chr6:160183708-160183948(+)$1	240	98	102	11.9999
::cc	chr14:102698838-102699092(-)$1	254	44	48	11.9999
[eee	chr3:38173272-38173526(-)$1	254	88	92	11.9999
hhhh	chr1:1256234-1256476(-)$1	242	11	15	11.9999
emmm	chr3:15093847-15094073(-)$1	226	39	43	11.9999
cc""	chr15:101933517-101933785(-)$1	268	153	157	11.9999
eeGG	chr12:122622742-122623040(+)$1	298	127	131	11.9999
DOOO	chr19:4363229-4363468(-)$1	239	4	8	11.9999
eeet	chr20:60699517-60699779(+)$1	262	97	101	11.9999
eeee	chr22:42910541-42910791(-)$1	250	214	218	11.9999
hhhh	chr1:146742470-146742716(+)$1	246	119	123	11.9999
]ddd	chr19:1255578-1255835(+)$1	257	78	82	11.9999
CDDD	chr19:6419133-6419421(-)$1	288	2	6	11.9999
&&&&	chr5:42808326-42808581(-)$1	255	38	42	11.9999
b]gg	chr5:132202617-132202867(+)$1	250	199	203	11.9999
qqcc	chr17:42400038-42400308(-)$1	270	150	154	11.9999
ooff	chr7:23545697-23545984(-)$1	287	225	229	11.9999
::::	chr14:31061374-31061710(+)$1	336	4	8	11.9999
hhhh	chr12:7074935-7075224(-)$1	289	142	146	11.9999
gggg	chr1:28834570-28834824(+)$1	254	66	70	11.9999
ccc2	chr16:88783534-88783791(-)$1	257	69	73	11.9999
eeee	chr20:44525409-44525681(+)$1	272	267	271	11.9999
DDDD	chr20:61300329-61300542(+)$1	213	11	15	11.9999
DDD{	chr1:155281863-155282159(+)$1	296	179	183	11.9999
hh[d	chr5:170837424-170837658(+)$1	234	103	107	11.9999
b]bb	chr19:2222436-2222705(+)$1	269	33	37	11.9999
eeee	chr17:7155800-7156152(+)$1	352	46	50	11.9999
gggg	chr3:133472277-133472527(+)$1	250	25	29	11.9999
ccc]	chr19:12057897-12058143(+)$1	246	95	99	11.9999
hhhh	chr19:1253811-1254059(+)$1	248	97	101	11.9999
EEE{	chr17:80048621-80048859(-)$1	238	99	103	11.9999
ee33	chr3:52028011-52028258(-)$1	247	61	65	11.9999
JJJ}	chr17:20922261-20922504(-)$1	243	148	152	11.9999
ffff	chr17:73895001-73895289(-)$1	288	93	97	11.9999
II::	chr1:21072010-21072258(-)$1	248	29	33	11.9999
LLLF	chr19:49484757-49485093(-)$1	336	65	69	11.9999
e333	chr1:156714843-156715107(-)$1	264	122	126	11.9999
CCcc	chr2:198364398-198364606(-)$1	208	98	102	11.9999
]fff	chrX:152954178-152954441(+)$1	263	149	153	11.9999
ffff	chr2:220079547-220079789(-)$1	242	145	149	11.9999
eeee	chr2:136718925-136719172(-)$1	247	101	105	11.9999
fffe	chr19:3980377-3980600(-)$1	223	23	27	11.9999
hhhh	chr3:5248677-5248962(+)$1	285	157	161	11.9999
i[bb	chr17:78968663-78968945(+)$1	282	112	116	11.9999
dddd	chr7:5354464-5354699(-)$1	235	31	35	11.9999
:ccc	chr10:114912045-114912319(+)$1	274	224	228	11.9999
CYYG	chr6:31603050-31603304(+)$1	254	117	121	11.9999
e[bb	chr1:55340785-55341041(-)$1	256	10	14	11.9999
mmbb	chr1:1602937-1603189(-)$1	252	100	104	11.9999
a:dd	chr7:56124008-56124239(+)$1	231	191	195	11.9999
GGGG	chr20:62659819-62660057(+)$1	238	8	12	11.9999

#DB
(((.	chr2:101622261-101622486(+)$1	1	17	21	11.9999
(...	chr1:35915402-35915723(-)$1	1	62	66	11.9999
((.(	chr7:931943-932198(+)$1	1	130	134	11.9999
(...	chr17:4722532-4722839(+)$1	1	6	10	11.9999
))))	chr6:32139182-32139445(-)$1	1	55	59	11.9999
).))	chr2:28627077-28627361(+)$1	1	129	133	11.9999
..))	chr20:47538442-47538684(+)$1	1	82	86	11.9999
(((.	chr16:30992239-30992511(+)$1	1	6	10	11.9999
))))	chr16:16283909-16284122(-)$1	1	24	28	11.9999
)..(	chr17:2597720-2597998(-)$1	1	117	121	11.9999
).))	chr22:38506374-38506582(-)$1	1	76	80	11.9999
))((	chr3:133494140-133494415(+)$1	1	43	47	11.9999
((.(	chr18:21116712-21116988(-)$1	1	53	57	11.9999
((((	chr17:73895099-73895342(-)$1	1	146	150	11.9999
((((	chr9:137020427-137020632(+)$1	1	79	83	11.9999
.(((	chr3:58090695-58090930(+)$1	1	11	15	11.9999
....	chr19:2434168-2434433(-)$1	1	10	14	11.9999
))).	chr1:228288979-228289333(-)$1	1	171	175	11.9999
...(	chr20:61438843-61439090(+)$1	1	55	59	11.9999
).))	chr16:88767708-88767976(-)$1	1	130	134	11.9999
((((	chr9:86586058-86586289(-)$1	1	15	19	11.9999
.)))	chr19:49993735-49993958(+)$1	1	119	123	11.9999
..((	chr9:139686558-139686810(+)$1	1	21	25	11.9999
).))	chr2:224822290-224822508(+)$1	1	104	108	11.9999
))))	chr17:80009028-80009250(-)$1	1	74	78	11.9999
))))	chr12:50151851-50152142(+)$1	1	204	208	11.9999
((((	chr1:44442800-44443027(+)$1	1	85	89	11.9999
((((	chr20:45035004-45035287(-)$1	1	73	77	11.9999
.(((	chr16:50663951-50664190(+)$1	1	10	14	11.9999
)(((	chr5:891129-891370(-)$1	1	98	102	11.9999
(...	chr12:53854826-53855064(+)$1	1	110	114	11.9999
(.((	chr6:30711890-30712141(-)$1	1	34	38	11.9999
((((	chr1:154988553-154988821(+)$1	1	5	9	11.9999
((((	chr9:139266408-139266702(-)$1	1	114	118	11.9999
))))	chr19:35500285-35500513(+)$1	1	116	120	11.9999
(((.	chr16:2048466-2048763(-)$1	1	44	48	11.9999
.(((	chr16:2820159-2820470(+)$1	1	111	115	11.9999
))))	chr6:160183708-160183948(+)$1	1	98	102	11.9999
..((	chr14:102698838-102699092(-)$1	1	44	48	11.9999
.(((	chr3:38173272-38173526(-)$1	1	88	92	11.9999
((((	chr1:1256234-1256476(-)$1	1	11	15	11.9999
(...	chr3:15093847-15094073(-)$1	1	39	43	11.9999
((..	chr15:101933517-101933785(-)$1	1	153	157	11.9999
))((	chr12:122622742-122623040(+)$1	1	127	131	11.9999
(...	chr19:4363229-4363468(-)$1	1	4	8	11.9999
(((.	chr20:60699517-60699779(+)$1	1	97	101	11.9999
((((	chr22:42910541-42910791(-)$1	1	214	218	11.9999
))))	chr1:146742470-146742716(+)$1	1	119	123	11.9999
.)))	chr19:1255578-1255835(+)$1	1	78	82	11.9999
((((	chr19:6419133-6419421(-)$1	1	2	6	11.9999
....	chr5:42808326-42808581(-)$1	1	38	42	11.9999
).))	chr5:132202617-132202867(+)$1	1	199	203	11.9999
..))	chr17:42400038-42400308(-)$1	1	150	154	11.9999
..))	chr7:23545697-23545984(-)$1	1	225	229	11.9999
....	chr14:31061374-31061710(+)$1	1	4	8	11.9999
))))	chr12:7074935-7075224(-)$1	1	142	146	11.9999
))))	chr1:28834570-28834824(+)$1	1	66	70	11.9999
))).	chr16:88783534-88783791(-)$1	1	69	73	11.9999
))))	chr20:44525409-44525681(+)$1	1	267	271	11.9999
((((	chr20:61300329-61300542(+)$1	1	11	15	11.9999
(((.	chr1:155281863-155282159(+)$1	1	179	183	11.9999
((.(	chr5:170837424-170837658(+)$1	1	103	107	11.9999
).))	chr19:2222436-2222705(+)$1	1	33	37	11.9999
((((	chr17:7155800-7156152(+)$1	1	46	50	11.9999
((((	chr3:133472277-133472527(+)$1	1	25	29	11.9999
))).	chr19:12057897-12058143(+)$1	1	95	99	11.9999
))))	chr19:1253811-1254059(+)$1	1	97	101	11.9999
(((.	chr17:80048621-80048859(-)$1	1	99	103	11.9999
))..	chr3:52028011-52028258(-)$1	1	61	65	11.9999
))).	chr17:20922261-20922504(-)$1	1	148	152	11.9999
))))	chr17:73895001-73895289(-)$1	1	93	97	11.9999
((..	chr1:21072010-21072258(-)$1	1	29	33	11.9999
...(	chr19:49484757-49485093(-)$1	1	65	69	11.9999
)...	chr1:156714843-156715107(-)$1	1	122	126	11.9999
((((	chr2:198364398-198364606(-)$1	1	98	102	11.9999
.)))	chrX:152954178-152954441(+)$1	1	149	153	11.9999
((((	chr2:220079547-220079789(-)$1	1	145	149	11.9999
((((	chr2:136718925-136719172(-)$1	1	101	105	11.9999
))))	chr19:3980377-3980600(-)$1	1	23	27	11.9999
((((	chr3:5248677-5248962(+)$1	1	157	161	11.9999
(.((	chr17:78968663-78968945(+)$1	1	112	116	11.9999
((((	chr7:5354464-5354699(-)$1	1	31	35	11.9999
.(((	chr10:114912045-114912319(+)$1	1	224	228	11.9999
)..)	chr6:31603050-31603304(+)$1	1	117	121	11.9999
(.((	chr1:55340785-55341041(-)$1	1	10	14	11.9999
..))	chr1:1602937-1603189(-)$1	1	100	104	11.9999
).((	chr7:56124008-56124239(+)$1	1	191	195	11.9999
((((	chr20:62659819-62660057(+)$1	1	8	12	11.9999

#PSSM
C : 0.95	c : 0.04	
A : 0.94	a : 0.05	
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	

#score	1055.9999999999998
#seq	88
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_UTR_m3_run2.nuc.txt

#NT
CCGCUGGCUGCCCUUCCCGCCAGCGCAGGUGUGGGACGGGCGGCGGACUAGGCACAGAGCUGCGGGAGCAGGCACAGGGAGUGUGGAGCCUGGCGGCGGGACGGCGGGAUCCGGUGGGAGCCGGAGUCCCGCCGAGGGGGGCUGGAGGUGGAGGGGCCCGGCGAGGCCGCGAUGAAGCCGAGCGGCGAGGACCAGGCGGCGCUGGCGGCCGGCCCCUGGGAGGAGUGCUUCCAGGCGGCCGUGCAGCUGGCGCUGCGGGCAGGACAGGUGAGCGCCACGGCUGGGCUCGGAA	chr18:11981493-11981819(+)$1	326	4	296	428.5000

#otherMatches

#Struct PSSM
c[eeeee!!dddd[cccnnnnnccc]ddddeeeeeccc:::ggggggg[bbmmmmbb]ggggggg:::eeeeeooooooeeeee:BB}HHHHHHHH}FFFFFFCCC{A{DDDD{DDDDKKBB::dddd[bbuuuuuuuuuuuubb]dddd:::::::ccc[hhhhhhhhmmmmhhhhhhhh22ccceeeee[a[adddd[ggggggg"""a[a[ddddddddeeeee[bbnnnnnbb]eeeee22dddd]dddd]a]a666666gggggggdddd]a]a]eeeeeffffffm	chr11:62494431-62494801(-)$1	370	41	333	428.5000
GGGGKKCCC:FFFFFFBB{EEEEE{A::bb[ccc!!bbnnnnnbb22ccc]bb:::::eeeee[bb[bb!!ddddnnnnndddd333bbbb]eeeee::::hhhhhhhhffffffmmmmffffff]hhhhhhhh::::A}EEEEE}BB}FFFFFFDDDDbba"""eeeee!!bbmmmmbb]eeeee333a]bb::===========[bbeeeeehhhhhhhhnnnnnhhhhhhhh]eeeee]bb]===========DDDD:::::::::::::bb!!bb[gggggggmmmmg	chr18:11981493-11981819(+)$1	326	4	296	428.5000

#DB
(.(((((..((((.(((.....))).))))))))))))...(((((((.((....)).)))))))...(((((......))))).)).)))))))).))))))(((.(.((((.((((..((..((((.((............)).)))).......(((.((((((((....))))))))..)))(((((.(.(((((.(((((((...(.(.(((((((((((((.((.....)).)))))..)))).)))).).)......))))))))))).).).)))))((((((.	chr11:62494431-62494801(-)$1	1	41	333	428.5000
((((..(((.((((((((.(((((.(..((.(((..((.....))..))).)).....(((((.((.((..((((.....))))...)))).)))))....((((((((((((((....)))))).))))))))....).))))).)).))))))(((((((...(((((..((....)).)))))...).))..(((((((((((.(((((((((((((((.....)))))))).))))).)).))))))))))))))).............((..((.(((((((....)	chr18:11981493-11981819(+)$1	1	4	296	428.5000

#PSSM
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
u : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	A : 0.50	
c : 0.50	C : 0.50	
u : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
u : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
a : 0.50	C : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
a : 0.50	A : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
c : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
u : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	A : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
a : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	U : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	A : 0.50	

#score	857.0
#seq	2
#width	292
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_UTR_m2_run1.nuc.txt

#NT
AAAGAAGA	chr17:57812691-57812935(+)$1	244	26	34	16.1739
AAAGAAGA	chr17:56083058-56083279(-)$1	221	58	66	16.1739
GAAGAAAA	chr13:41556284-41556518(-)$1	234	116	124	15.0869
GAUGAAGA	chr8:95862123-95862411(+)$1	288	99	107	15.0869
GAAGUAGA	chr20:34319762-34319965(-)$1	203	24	32	15.5217
GUAGAAGA	chr5:79745347-79745630(+)$1	283	70	78	15.5217
AAAGAAGA	chr6:64395568-64395779(+)$1	211	75	83	16.1739
GUAGAAGA	chr5:54662586-54662800(+)$1	214	32	40	15.5217
GAUGAAGA	chr3:27478901-27479118(-)$1	217	148	156	15.0869
CUAGAAGA	chr6:170062308-170062548(-)$1	240	24	32	12.1521
GAAGAAAA	chr3:129373743-129374015(-)$1	272	157	165	15.0869
GAAGAAGG	chr15:34553040-34553318(-)$1	278	147	155	15.3043
GAAGAAGA	chr18:43702345-43702633(+)$1	288	46	54	19.3260
GAAGAAAA	chr15:60740058-60740305(-)$1	247	121	129	15.0869
GAAGAAGA	chr11:9430032-9430286(+)$1	254	86	94	19.3260
AAAGAAGA	chr3:169693300-169693604(+)$1	304	113	121	16.1739
GAAGAAGA	chr17:63525784-63526022(-)$1	238	34	42	19.3260
GAAGCAGA	chr6:117866540-117866855(+)$1	315	107	115	15.6304
GCAGAAGA	chr3:142139868-142140094(-)$1	226	195	203	15.6304
GAAGUAGA	chr17:48818364-48818594(+)$1	230	174	182	15.5217
GAAGAGGA	chr7:134635025-134635318(+)$1	293	104	112	14.8695
gaugaaga	chr14:102549311-102549529(-)$1	218	63	71	15.0869
GAAGAAGA	chr20:34293048-34293256(-)$1	208	5	13	19.3260
CAAGAAGA	chr4:39082644-39082960(+)$1	316	145	153	15.9565
GAAGAGGA	chr3:150293423-150293645(+)$1	222	15	23	14.8695
GAAGCAGA	chr2:176015686-176015975(-)$1	289	147	155	15.6304
GAAGAAGA	chr1:94335242-94335600(-)$1	358	172	180	19.3260
GCAGAAGA	chr9:125613318-125613610(-)$1	292	212	220	15.6304
AAAGAAGA	chr10:64950613-64950876(-)$1	263	40	48	16.1739
CCAGAAGA	chr6:142726782-142727035(+)$1	253	117	125	12.2608
UAAGAAGA	chr9:125758226-125758453(+)$1	227	147	155	15.6304
GAAGAUGA	chr2:39250255-39250464(-)$1	209	155	163	14.7608
GAAGCAGA	chr6:163899769-163900027(+)$1	258	96	104	15.6304
GAAGAACA	chrX:77365269-77365514(+)$1	245	115	123	14.8695
GAAGAAGG	chr9:88952237-88952485(-)$1	248	53	61	15.3043
GAAGAAGG	chr7:32527192-32527432(-)$1	240	80	88	15.3043
GAAGCAGA	chr18:33754347-33754560(+)$1	213	167	175	15.6304
GAAGGAGA	chr8:68150477-68150688(-)$1	211	193	201	15.3043
GAGGAAGA	chr5:14687536-14687872(+)$1	336	209	217	14.8695
AAAGAAGA	chr1:231954098-231954388(+)$1	290	110	118	16.1739
GGAGAAGA	chr6:114277732-114277956(-)$1	224	107	115	15.3043
GAAGUAGA	chr20:34319795-34320012(-)$1	217	71	79	15.5217
GAAGAAGU	chr5:79285881-79286161(-)$1	280	195	203	14.9782
GCAGAAGA	chr2:190338853-190339091(+)$1	238	64	72	15.6304
GAAGAAGG	chr12:50146655-50146857(+)$1	202	124	132	15.3043

#otherMatches

#Struct PSSM
::::::::	chr2:100019317-100019592(-)$1	275	78	86	15.9565
uuuggggg	chr17:57812691-57812935(+)$1	244	26	34	16.1739
::::::::	chr17:56083058-56083279(-)$1	221	58	66	16.1739
==]dddd3	chr13:41556284-41556518(-)$1	234	116	124	15.0869
f]gggggg	chr8:95862123-95862411(+)$1	288	99	107	15.0869
cIIIIIII	chr20:34319762-34319965(-)$1	203	24	32	15.5217
hhhha[cc	chr5:79745347-79745630(+)$1	283	70	78	15.5217
b!!ggggg	chr6:64395568-64395779(+)$1	211	75	83	16.1739
ggg!!bbr	chr5:54662586-54662800(+)$1	214	32	40	15.5217
[ccc!!cc	chr3:27478901-27479118(-)$1	217	148	156	15.0869
NEEEEE::	chr6:170062308-170062548(-)$1	240	24	32	12.1521
xxxxxxxx	chr3:129373743-129374015(-)$1	272	157	165	15.0869
ccc4444g	chr15:34553040-34553318(-)$1	278	147	155	15.3043
ggggdddd	chr18:43702345-43702633(+)$1	288	46	54	19.3260
::::::::	chr15:60740058-60740305(-)$1	247	121	129	15.0869
IIIIIIII	chr11:9430032-9430286(+)$1	254	86	94	19.3260
:::eeeee	chr3:169693300-169693604(+)$1	304	113	121	16.1739
::::::::	chr17:63525784-63526022(-)$1	238	34	42	19.3260
"""eeeee	chr6:117866540-117866855(+)$1	315	107	115	15.6304
FFFFFF??	chr3:142139868-142140094(-)$1	226	195	203	15.6304
mddddbb2	chr17:48818364-48818594(+)$1	230	174	182	15.5217
cc]bb]ee	chr7:134635025-134635318(+)$1	293	104	112	14.8695
ccc$$$$$	chr14:102549311-102549529(-)$1	218	63	71	15.0869
::::::::	chr20:34293048-34293256(-)$1	208	5	13	19.3260
:::GGGGG	chr4:39082644-39082960(+)$1	316	145	153	15.9565
:::ddddn	chr3:150293423-150293645(+)$1	222	15	23	14.8695
IIIIIIdd	chr2:176015686-176015975(-)$1	289	147	155	15.6304
JJJJJJJJ	chr1:94335242-94335600(-)$1	358	172	180	19.3260
dd::::::	chr9:125613318-125613610(-)$1	292	212	220	15.6304
::::::::	chr10:64950613-64950876(-)$1	263	40	48	16.1739
HHHH::cc	chr6:142726782-142727035(+)$1	253	117	125	12.2608
fffnnnnn	chr9:125758226-125758453(+)$1	227	147	155	15.6304
$$$$$ddd	chr2:39250255-39250464(-)$1	209	155	163	14.7608
^^^^^^^^	chr6:163899769-163900027(+)$1	258	96	104	15.6304
eeeee666	chrX:77365269-77365514(+)$1	245	115	123	14.8695
========	chr9:88952237-88952485(-)$1	248	53	61	15.3043
b::::::d	chr7:32527192-32527432(-)$1	240	80	88	15.3043
EEEEccc#	chr18:33754347-33754560(+)$1	213	167	175	15.6304
dddd22hh	chr8:68150477-68150688(-)$1	211	193	201	15.3043
iiieeeee	chr5:14687536-14687872(+)$1	336	209	217	14.8695
tttttttt	chr1:231954098-231954388(+)$1	290	110	118	16.1739
c22fffff	chr6:114277732-114277956(-)$1	224	107	115	15.3043
cc####bb	chr20:34319795-34320012(-)$1	217	71	79	15.5217
========	chr5:79285881-79286161(-)$1	280	195	203	14.9782
BB:eeeee	chr2:190338853-190339091(+)$1	238	64	72	15.6304
nnnnnddd	chr12:50146655-50146857(+)$1	202	124	132	15.3043

#DB
........	chr2:100019317-100019592(-)$1	1	78	86	15.9565
...)))))	chr17:57812691-57812935(+)$1	1	26	34	16.1739
........	chr17:56083058-56083279(-)$1	1	58	66	16.1739
)).)))).	chr13:41556284-41556518(-)$1	1	116	124	15.0869
).))))))	chr8:95862123-95862411(+)$1	1	99	107	15.0869
)(((((((	chr20:34319762-34319965(-)$1	1	24	32	15.5217
(((((.((	chr5:79745347-79745630(+)$1	1	70	78	15.5217
(..(((((	chr6:64395568-64395779(+)$1	1	75	83	16.1739
(((..((.	chr5:54662586-54662800(+)$1	1	32	40	15.5217
.(((..((	chr3:27478901-27479118(-)$1	1	148	156	15.0869
.(((((..	chr6:170062308-170062548(-)$1	1	24	32	12.1521
........	chr3:129373743-129374015(-)$1	1	157	165	15.0869
)))....)	chr15:34553040-34553318(-)$1	1	147	155	15.3043
((((((((	chr18:43702345-43702633(+)$1	1	46	54	19.3260
........	chr15:60740058-60740305(-)$1	1	121	129	15.0869
((((((((	chr11:9430032-9430286(+)$1	1	86	94	19.3260
...(((((	chr3:169693300-169693604(+)$1	1	113	121	16.1739
........	chr17:63525784-63526022(-)$1	1	34	42	19.3260
...(((((	chr6:117866540-117866855(+)$1	1	107	115	15.6304
))))))..	chr3:142139868-142140094(-)$1	1	195	203	15.6304
.)))))).	chr17:48818364-48818594(+)$1	1	174	182	15.5217
)).)).))	chr7:134635025-134635318(+)$1	1	104	112	14.8695
(((.....	chr14:102549311-102549529(-)$1	1	63	71	15.0869
........	chr20:34293048-34293256(-)$1	1	5	13	19.3260
...)))))	chr4:39082644-39082960(+)$1	1	145	153	15.9565
...((((.	chr3:150293423-150293645(+)$1	1	15	23	14.8695
((((((((	chr2:176015686-176015975(-)$1	1	147	155	15.6304
))))))))	chr1:94335242-94335600(-)$1	1	172	180	19.3260
))......	chr9:125613318-125613610(-)$1	1	212	220	15.6304
........	chr10:64950613-64950876(-)$1	1	40	48	16.1739
((((..((	chr6:142726782-142727035(+)$1	1	117	125	12.2608
(((.....	chr9:125758226-125758453(+)$1	1	147	155	15.6304
.....(((	chr2:39250255-39250464(-)$1	1	155	163	14.7608
........	chr6:163899769-163900027(+)$1	1	96	104	15.6304
)))))...	chrX:77365269-77365514(+)$1	1	115	123	14.8695
((((((((	chr9:88952237-88952485(-)$1	1	53	61	15.3043
)......(	chr7:32527192-32527432(-)$1	1	80	88	15.3043
))))(((.	chr18:33754347-33754560(+)$1	1	167	175	15.6304
))))..))	chr8:68150477-68150688(-)$1	1	193	201	15.3043
((((((((	chr5:14687536-14687872(+)$1	1	209	217	14.8695
........	chr1:231954098-231954388(+)$1	1	110	118	16.1739
)..)))))	chr6:114277732-114277956(-)$1	1	107	115	15.3043
((....((	chr20:34319795-34320012(-)$1	1	71	79	15.5217
((((((((	chr5:79285881-79286161(-)$1	1	195	203	14.9782
((.(((((	chr2:190338853-190339091(+)$1	1	64	72	15.6304
.....)))	chr12:50146655-50146857(+)$1	1	124	132	15.3043

#PSSM
G : 0.73	A : 0.13	C : 0.06	c : 0.02	g : 0.02	U : 0.02	
A : 0.78	C : 0.08	U : 0.06	a : 0.04	G : 0.02	
A : 0.89	U : 0.04	a : 0.02	u : 0.02	G : 0.02	
G : 0.95	g : 0.04	
A : 0.78	C : 0.08	U : 0.06	a : 0.04	G : 0.02	
A : 0.89	a : 0.04	G : 0.04	U : 0.02	
G : 0.86	A : 0.06	g : 0.04	C : 0.02	
A : 0.84	G : 0.08	a : 0.04	U : 0.02	

#score	724.2173913043478
#seq	46
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_transcript_m3_run2.nuc.txt

#NT
UAUUUUG	chr8:64081805-64082067(+)$1	262	234	241	13.8448
UGCUUUG	chr22:29688010-29688263(+)$1	253	180	187	12.1206
UGUCUUG	chr12:22821412-22821696(+)$1	284	73	80	12.2931
GGUUUUG	chr19:5649821-5650088(+)$1	267	53	60	12.0344
uuuuuug	chr1:222906347-222906584(+)$1	237	86	93	14.1034
UGUUUUU	chr12:131286065-131286314(-)$1	249	228	235	12.8103
UGUUUUC	chrX:70767635-70767876(+)$1	241	186	193	12.7241
UGUGUUG	chrX:40569229-40569488(-)$1	259	68	75	12.3793
UGUUUUA	chr4:25415979-25416226(+)$1	247	191	198	13.0689
UUUUUUG	chr11:85737270-85737517(-)$1	247	158	165	14.1034
uGUAUUG	chr2:183821170-183821430(-)$1	260	55	62	12.2068
UCUUUUG	chr6:17852143-17852392(-)$1	249	20	27	13.7586
uguuuCG	chr16:2809876-2810084(+)$1	208	0	7	11.8620
UUUUUUG	chr12:123078727-123078976(+)$1	249	62	69	14.1034
UUUUUUG	chr5:43122034-43122290(+)$1	256	22	29	14.1034
uuuuuuG	chr2:29023022-29023294(+)$1	272	87	94	14.1034
UAUUUUG	chr12:62912291-62912559(+)$1	268	87	94	13.8448
UAUUUUG	chr6:83896645-83896907(-)$1	262	10	17	13.8448
CGUUUUG	chr1:173953621-173953874(-)$1	253	14	21	12.0344
AGUUUUG	chr22:29678268-29678519(+)$1	251	42	49	12.1206
UGUGUUG	chr20:31379145-31379412(+)$1	267	61	68	12.3793
UGUUUUA	chr6:36566513-36566767(+)$1	254	81	88	13.0689
uguuuug	chr18:1361093-1361338(-)$1	245	198	205	16.6034
UUUUUUG	chr7:148515067-148515323(-)$1	256	17	24	14.1034
UGUUUGG	chr7:116660534-116660783(+)$1	249	128	135	11.8620
UGUUUUG	chr4:24538634-24538871(-)$1	237	83	90	16.6034
UGUUUUA	chr6:4063194-4063450(+)$1	256	105	112	13.0689
UGUUUUG	chr16:87432182-87432443(+)$1	261	89	96	16.6034
UGUUUUC	chr19:54972240-54972488(+)$1	248	165	172	12.7241
UCUUUUG	chr22:32880939-32881190(+)$1	251	41	48	13.7586
UGUUUUA	chr2:97285151-97285403(-)$1	252	92	99	13.0689
uauuuua	chr12:121755542-121755790(-)$1	248	84	91	10.3103
UGUUUUU	chr2:152293233-152293494(+)$1	261	10	17	12.8103
UGUUUUG	chr7:100481561-100481858(+)$1	297	95	102	16.6034
UAUUUUG	chr13:31035546-31035824(-)$1	278	42	49	13.8448
ucuuuug	chr19:29025489-29025759(-)$1	270	14	21	13.7586
UUUUUUG	chr21:36260643-36260901(-)$1	258	80	87	14.1034
UGUGUUG	chr7:32919409-32919664(-)$1	255	223	230	12.3793
UGUUUUG	chr19:2202621-2202867(+)$1	246	67	74	16.6034
UGuuuug	chr6:36569631-36569886(+)$1	255	74	81	16.6034
UGUUGUG	chr5:134116718-134116949(+)$1	231	136	143	12.2068
AGUUUUG	chr2:234178535-234178780(+)$1	245	233	240	12.1206
UGUUUUG	chr4:2906370-2906627(+)$1	257	70	77	16.6034
UGUUUUU	chr15:91504143-91504392(+)$1	249	155	162	12.8103
UGUUGUG	chr7:98528137-98528398(+)$1	261	89	96	12.2068
UUUUUUG	chr2:169684538-169684821(+)$1	283	115	122	14.1034
uguucug	chr2:69610131-69610390(-)$1	259	130	137	12.2931
UUUUUUG	chr11:85346780-85347029(+)$1	249	194	201	14.1034
uguucug	chr1:158583950-158584205(-)$1	255	49	56	12.2931
UGCUUUG	chrX:123695524-123695770(-)$1	246	120	127	12.1206
UGUUUUG	chr16:66858647-66858910(-)$1	263	203	210	16.6034
UCUUUUG	chr12:98921739-98922010(+)$1	271	1	8	13.7586
UGUUCUG	chr20:3888453-3888733(+)$1	280	89	96	12.2931
UCUUUUG	chr9:95033802-95034065(-)$1	263	110	117	13.7586
UAUUUUA	chr20:3899009-3899298(+)$1	289	12	19	10.3103
UGUUUUG	chr8:133819815-133820064(+)$1	249	35	42	16.6034
UGCUUUG	chr6:15468661-15468915(+)$1	254	9	16	12.1206

#otherMatches

#Struct PSSM
fffff[b	chr4:79771964-79772210(+)$1	246	63	70	12.2931
^^^^^^^	chr8:64081805-64082067(+)$1	262	234	241	13.8448
eeee[aq	chr22:29688010-29688263(+)$1	253	180	187	12.1206
iii!!cc	chr12:22821412-22821696(+)$1	284	73	80	12.2931
=======	chr19:5649821-5650088(+)$1	267	53	60	12.0344
:::::ff	chr1:222906347-222906584(+)$1	237	86	93	14.1034
44fffff	chr12:131286065-131286314(-)$1	249	228	235	12.8103
dd]ffff	chrX:70767635-70767876(+)$1	241	186	193	12.7241
ee####i	chrX:40569229-40569488(-)$1	259	68	75	12.3793
fffff22	chr4:25415979-25416226(+)$1	247	191	198	13.0689
6666===	chr11:85737270-85737517(-)$1	247	158	165	14.1034
ccc[ddd	chr2:183821170-183821430(-)$1	260	55	62	12.2068
mmggggg	chr6:17852143-17852392(-)$1	249	20	27	13.7586
JJJJJJJ	chr16:2809876-2810084(+)$1	208	0	7	11.8620
22bb]bb	chr12:123078727-123078976(+)$1	249	62	69	14.1034
IIJJJJJ	chr5:43122034-43122290(+)$1	256	22	29	14.1034
::::FFF	chr2:29023022-29023294(+)$1	272	87	94	14.1034
gggggg[	chr12:62912291-62912559(+)$1	268	87	94	13.8448
=======	chr6:83896645-83896907(-)$1	262	10	17	13.8448
A{BB{GG	chr1:173953621-173953874(-)$1	253	14	21	12.0344
DD:::gg	chr22:29678268-29678519(+)$1	251	42	49	12.1206
GGGGGGP	chr20:31379145-31379412(+)$1	267	61	68	12.3793
cc####c	chr6:36566513-36566767(+)$1	254	81	88	13.0689
YDDDD||	chr18:1361093-1361338(-)$1	245	198	205	16.6034
!!bbooo	chr7:148515067-148515323(-)$1	256	17	24	14.1034
mmmmddd	chr7:116660534-116660783(+)$1	249	128	135	11.8620
]ccc]cc	chr4:24538634-24538871(-)$1	237	83	90	16.6034
f]ddddc	chr6:4063194-4063450(+)$1	256	105	112	13.0689
'''''''	chr16:87432182-87432443(+)$1	261	89	96	16.6034
gggg:::	chr19:54972240-54972488(+)$1	248	165	172	12.7241
===lll=	chr22:32880939-32881190(+)$1	251	41	48	13.7586
dddyyyy	chr2:97285151-97285403(-)$1	252	92	99	13.0689
sssssss	chr12:121755542-121755790(-)$1	248	84	91	10.3103
+++++++	chr2:152293233-152293494(+)$1	261	10	17	12.8103
QIIIIII	chr7:100481561-100481858(+)$1	297	95	102	16.6034
2gggggg	chr13:31035546-31035824(-)$1	278	42	49	13.8448
:::::::	chr19:29025489-29025759(-)$1	270	14	21	13.7586
:::::::	chr21:36260643-36260901(-)$1	258	80	87	14.1034
ffffff]	chr7:32919409-32919664(-)$1	255	223	230	12.3793
rccc333	chr19:2202621-2202867(+)$1	246	67	74	16.6034
ccc:iii	chr6:36569631-36569886(+)$1	255	74	81	16.6034
mmmmhhh	chr5:134116718-134116949(+)$1	231	136	143	12.2068
dddd22f	chr2:234178535-234178780(+)$1	245	233	240	12.1206
lffffff	chr4:2906370-2906627(+)$1	257	70	77	16.6034
dddd!!a	chr15:91504143-91504392(+)$1	249	155	162	12.8103
a]dddd2	chr7:98528137-98528398(+)$1	261	89	96	12.2068
h"""bb[	chr2:169684538-169684821(+)$1	283	115	122	14.1034
mmmmggg	chr2:69610131-69610390(-)$1	259	130	137	12.2931
:::::::	chr11:85346780-85347029(+)$1	249	194	201	14.1034
GGGGGG:	chr1:158583950-158584205(-)$1	255	49	56	12.2931
ccc[ccc	chrX:123695524-123695770(-)$1	246	120	127	12.1206
hhhhhff	chr16:66858647-66858910(-)$1	263	203	210	16.6034
::::::d	chr12:98921739-98922010(+)$1	271	1	8	13.7586
qqfffff	chr20:3888453-3888733(+)$1	280	89	96	12.2931
^^^^^^^	chr9:95033802-95034065(-)$1	263	110	117	13.7586
JJJJJJJ	chr20:3899009-3899298(+)$1	289	12	19	10.3103
d4444cc	chr8:133819815-133820064(+)$1	249	35	42	16.6034
:::::::	chr6:15468661-15468915(+)$1	254	9	16	12.1206

#DB
(((((.(	chr4:79771964-79772210(+)$1	1	63	70	12.2931
.......	chr8:64081805-64082067(+)$1	1	234	241	13.8448
((((.(.	chr22:29688010-29688263(+)$1	1	180	187	12.1206
(((..((	chr12:22821412-22821696(+)$1	1	73	80	12.2931
)))))))	chr19:5649821-5650088(+)$1	1	53	60	12.0344
.....((	chr1:222906347-222906584(+)$1	1	86	93	14.1034
..)))))	chr12:131286065-131286314(-)$1	1	228	235	12.8103
)).))))	chrX:70767635-70767876(+)$1	1	186	193	12.7241
((....(	chrX:40569229-40569488(-)$1	1	68	75	12.3793
)))))..	chr4:25415979-25416226(+)$1	1	191	198	13.0689
....)))	chr11:85737270-85737517(-)$1	1	158	165	14.1034
(((.(((	chr2:183821170-183821430(-)$1	1	55	62	12.2068
..)))))	chr6:17852143-17852392(-)$1	1	20	27	13.7586
(((((((	chr16:2809876-2810084(+)$1	1	0	7	11.8620
..)).))	chr12:123078727-123078976(+)$1	1	62	69	14.1034
(((((((	chr5:43122034-43122290(+)$1	1	22	29	14.1034
....)))	chr2:29023022-29023294(+)$1	1	87	94	14.1034
((((((.	chr12:62912291-62912559(+)$1	1	87	94	13.8448
(((((((	chr6:83896645-83896907(-)$1	1	10	17	13.8448
(.((.((	chr1:173953621-173953874(-)$1	1	14	21	12.0344
((...((	chr22:29678268-29678519(+)$1	1	42	49	12.1206
((((((.	chr20:31379145-31379412(+)$1	1	61	68	12.3793
((....(	chr6:36566513-36566767(+)$1	1	81	88	13.0689
.))))..	chr18:1361093-1361338(-)$1	1	198	205	16.6034
..((...	chr7:148515067-148515323(-)$1	1	17	24	14.1034
....)))	chr7:116660534-116660783(+)$1	1	128	135	11.8620
.))).))	chr4:24538634-24538871(-)$1	1	83	90	16.6034
).)))))	chr6:4063194-4063450(+)$1	1	105	112	13.0689
.......	chr16:87432182-87432443(+)$1	1	89	96	16.6034
))))...	chr19:54972240-54972488(+)$1	1	165	172	12.7241
(((...)	chr22:32880939-32881190(+)$1	1	41	48	13.7586
(((....	chr2:97285151-97285403(-)$1	1	92	99	13.0689
.......	chr12:121755542-121755790(-)$1	1	84	91	10.3103
.......	chr2:152293233-152293494(+)$1	1	10	17	12.8103
.((((((	chr7:100481561-100481858(+)$1	1	95	102	16.6034
.))))))	chr13:31035546-31035824(-)$1	1	42	49	13.8448
.......	chr19:29025489-29025759(-)$1	1	14	21	13.7586
.......	chr21:36260643-36260901(-)$1	1	80	87	14.1034
)))))).	chr7:32919409-32919664(-)$1	1	223	230	12.3793
.)))...	chr19:2202621-2202867(+)$1	1	67	74	16.6034
))).(((	chr6:36569631-36569886(+)$1	1	74	81	16.6034
....)))	chr5:134116718-134116949(+)$1	1	136	143	12.2068
))))..)	chr2:234178535-234178780(+)$1	1	233	240	12.1206
.))))))	chr4:2906370-2906627(+)$1	1	70	77	16.6034
((((..(	chr15:91504143-91504392(+)$1	1	155	162	12.8103
).)))).	chr7:98528137-98528398(+)$1	1	89	96	12.2068
(...((.	chr2:169684538-169684821(+)$1	1	115	122	14.1034
....)))	chr2:69610131-69610390(-)$1	1	130	137	12.2931
.......	chr11:85346780-85347029(+)$1	1	194	201	14.1034
((((((.	chr1:158583950-158584205(-)$1	1	49	56	12.2931
(((.(((	chrX:123695524-123695770(-)$1	1	120	127	12.1206
)))))))	chr16:66858647-66858910(-)$1	1	203	210	16.6034
......(	chr12:98921739-98922010(+)$1	1	1	8	13.7586
..)))))	chr20:3888453-3888733(+)$1	1	89	96	12.2931
.......	chr9:95033802-95034065(-)$1	1	110	117	13.7586
(((((((	chr20:3899009-3899298(+)$1	1	12	19	10.3103
)....))	chr8:133819815-133820064(+)$1	1	35	42	16.6034
.......	chr6:15468661-15468915(+)$1	1	9	16	12.1206

#PSSM
U : 0.77	u : 0.15	A : 0.03	G : 0.01	C : 0.01	
G : 0.58	U : 0.12	A : 0.08	C : 0.06	g : 0.06	u : 0.03	a : 0.01	c : 0.01	
U : 0.79	u : 0.15	C : 0.05	
U : 0.74	u : 0.15	G : 0.05	C : 0.03	A : 0.01	
U : 0.79	u : 0.12	G : 0.03	c : 0.03	C : 0.01	
U : 0.82	u : 0.13	C : 0.01	G : 0.01	
G : 0.70	g : 0.10	A : 0.08	U : 0.05	C : 0.03	a : 0.01	

#score	780.9310344827592
#seq	58
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_UTR_m1_run2.nuc.txt

#NT
cccccccccccuuccu	chr5:141693101-141693410(-)$1	309	10	26	24.1000
CCCCACCCAUCUCCCC	chr3:128533313-128533558(+)$1	245	111	127	18.5000
ccccucgucccauccc	chr13:113537286-113537534(+)$1	248	31	47	23.0000
ccccuccccucuuccc	chr15:67835406-67835748(+)$1	342	114	130	27.9000
CCCUUCCCCUUUUCCC	chr19:43012790-43013041(-)$1	251	56	72	22.1000
CCCGUCCCCCCAUCCC	chr22:36678444-36678714(-)$1	270	128	144	25.7000
CCCUUCUCCCCAUCCC	chr19:18731493-18731792(+)$1	299	227	243	23.1000
CUCCUCCUCCCUCCCC	chr20:43059470-43059734(+)$1	264	172	188	21.5000
ccccuccacccacccc	chr9:139942813-139943040(-)$1	227	36	52	22.9000
ucccucccccccucac	chr11:2159800-2160030(-)$1	230	85	101	23.7000
UCCCUCACCCAUGCCC	chr11:121501247-121501502(+)$1	255	112	128	20.4000
UCCCUCUCCCAAUCUC	chrX:53406777-53407060(-)$1	283	78	94	18.4000
CUCCUCCCUCAGCCCC	chrX:129191018-129191322(+)$1	304	149	165	17.0000
CACCUCCUACCCUCCC	chr12:57606428-57606653(+)$1	225	163	179	19.2000
cuccuccucccuuccc	chr17:30264096-30264345(+)$1	249	16	32	24.3000
CUCCUCUCCCUCCCCC	chr17:8063190-8063435(-)$1	245	118	134	18.7000
CACCUCCCCCCACCCC	chr14:21561426-21561744(-)$1	318	130	146	23.0000
UCUCUCCCACCCUCCC	chr9:131395756-131396010(+)$1	254	120	136	20.1000
ccucccccaccuuccc	chr7:917483-917724(+)$1	241	62	78	21.4000
ACCCCCACCCCUUCCC	chr20:307670-307907(+)$1	237	33	49	22.0000
ccucccucccuuuccc	chr12:16035345-16035605(+)$1	260	62	78	20.2000
ucccucccuccuuccc	chr7:4306822-4307145(+)$1	323	60	76	24.8000
ucccucccccccucac	chr11:2159862-2160066(-)$1	204	121	137	23.7000
CCCUCCGCCCCCUCCC	chr16:24942374-24942673(-)$1	299	118	134	20.5000
CCCCUCCCCCAUUCCC	chr6:16761430-16761684(-)$1	254	194	210	29.7000
CCCCUCCUCCCUCCAC	chr7:137563921-137564144(-)$1	223	45	61	21.5000
CCCCACCCCCAUGUCC	chr6:29913283-29913538(+)$1	255	93	109	18.7000
ccucucucccccucgc	chr11:2159626-2159833(-)$1	207	7	23	19.6000
ucccucccccccucac	chr11:2159866-2160073(-)$1	207	128	144	23.7000
CACCUUCCCCAUCCCC	chr12:64541143-64541400(+)$1	257	60	76	19.0000
ucccuccccuuuuccc	chr3:33155446-33155708(+)$1	262	69	85	23.1000
UCCCUCACCCUUCCCC	chr11:43365762-43366030(+)$1	268	133	149	20.8000
ucccucucucacuccc	chr7:116863129-116863420(+)$1	291	16	32	19.0000
CCCCACCCCUCUUCUC	chr14:23794784-23795070(+)$1	286	184	200	21.0000
ccucccucccuuuccc	chr19:54942531-54942836(+)$1	305	51	67	20.2000
CGCCGCCUCCUUUCCC	chr19:1257557-1257813(+)$1	256	104	120	18.6000
uccuucccccaucccc	chr17:7190097-7190359(+)$1	262	104	120	20.5000
CCCCUUCCCCACUCCU	chr1:160061112-160061365(-)$1	253	97	113	19.7000
CCCCCUCACCUUUCCC	chr12:6857426-6857689(-)$1	263	216	232	18.6000
CCCCUCCUCUCCUCCC	chr6:114292061-114292334(-)$1	273	107	123	23.2000
CCUUUUCCCCCUUCCC	chr11:57585430-57585663(+)$1	233	72	88	20.0000
CGCCACCCCUACUCCC	chr2:168811865-168812105(-)$1	240	140	156	18.1000
CCCCACCCCCAGUGCC	chr19:56206586-56206912(+)$1	326	226	242	19.9000
CCCCUACCACACUCCC	chr19:45496375-45496662(+)$1	287	138	154	20.3000
cccguccccccguccc	chr17:80708689-80708914(+)$1	225	95	111	25.2000
CCCCUCACCCCUUUAC	chrX:53965398-53965697(-)$1	299	123	139	20.2000
CCUCUCGCCCCAUCCC	chr12:57606525-57606760(+)$1	235	159	175	22.8000
CCCGUCCCCCCAUCCC	chr22:36678422-36678644(-)$1	222	58	74	25.7000
CCCCACCCCAGUUCCC	chr12:56506656-56506918(+)$1	262	138	154	21.6000

#otherMatches

#Struct PSSM
22dddd::::::cccq	chr7:72416677-72416974(+)$1	297	117	133	25.7000
:::::::::BB{FFFF	chr5:141693101-141693410(-)$1	309	10	26	24.1000
DD::::::::::::::	chr3:128533313-128533558(+)$1	245	111	127	18.5000
oooooccc::::::::	chr13:113537286-113537534(+)$1	248	31	47	23.0000
eee:::::::::::::	chr15:67835406-67835748(+)$1	342	114	130	27.9000
b333dddd]iiiiiii	chr19:43012790-43013041(-)$1	251	56	72	22.1000
!!bb[bb^^^^^^^^^	chr22:36678444-36678714(-)$1	270	128	144	25.7000
::::::::::eeeee!	chr19:18731493-18731792(+)$1	299	227	243	23.1000
:GGGGGGG////////	chr20:43059470-43059734(+)$1	264	172	188	21.5000
::::::::::::::::	chr9:139942813-139943040(-)$1	227	36	52	22.9000
::::::::::::bb[b	chr11:2159800-2160030(-)$1	230	85	101	23.7000
ee(((((((((ccc""	chr11:121501247-121501502(+)$1	255	112	128	20.4000
:::::EEEEEKKBBBB	chrX:53406777-53407060(-)$1	283	78	94	18.4000
::::dddd!!eeeeeb	chrX:129191018-129191322(+)$1	304	149	165	17.0000
iiii[bb!!a[fffff	chr12:57606428-57606653(+)$1	225	163	179	19.2000
MMBB{GGGGGGG::BB	chr17:30264096-30264345(+)$1	249	16	32	24.3000
gg[a++++++++++++	chr17:8063190-8063435(-)$1	245	118	134	18.7000
ffffff^^^^^^^^^^	chr14:21561426-21561744(-)$1	318	130	146	23.0000
c]bb]eeeee::::::	chr9:131395756-131396010(+)$1	254	120	136	20.1000
cc^^^^^^^^^^^^^^	chr7:917483-917724(+)$1	241	62	78	21.4000
::::::::::::::::	chr20:307670-307907(+)$1	237	33	49	22.0000
::::::::::::::::	chr12:16035345-16035605(+)$1	260	62	78	20.2000
::::::::::::::::	chr7:4306822-4307145(+)$1	323	60	76	24.8000
::::::::::::::::	chr11:2159862-2160066(-)$1	204	121	137	23.7000
ddd333bb::eeeee!	chr16:24942374-24942673(-)$1	299	118	134	20.5000
::::FFFFFF::::::	chr6:16761430-16761684(-)$1	254	194	210	29.7000
dd++++++++++++++	chr7:137563921-137564144(-)$1	223	45	61	21.5000
ggggggg::BB{BB{H	chr6:29913283-29913538(+)$1	255	93	109	18.7000
F{BB::::::::::cc	chr11:2159626-2159833(-)$1	207	7	23	19.6000
::::::::::::::::	chr11:2159866-2160073(-)$1	207	128	144	23.7000
^^^^^^^^^^^^^^^^	chr12:64541143-64541400(+)$1	257	60	76	19.0000
::::::::::::::::	chr3:33155446-33155708(+)$1	262	69	85	23.1000
^^^^^^^^^^^^^^^^	chr11:43365762-43366030(+)$1	268	133	149	20.8000
::::::::::::::::	chr7:116863129-116863420(+)$1	291	16	32	19.0000
JFFFFFF:::::::::	chr14:23794784-23795070(+)$1	286	184	200	21.0000
::::::::::::::::	chr19:54942531-54942836(+)$1	305	51	67	20.2000
ubbbb]ddddeeeee:	chr19:1257557-1257813(+)$1	256	104	120	18.6000
======="""======	chr17:7190097-7190359(+)$1	262	104	120	20.5000
eee]ccc:::::::::	chr1:160061112-160061365(-)$1	253	97	113	19.7000
::::::::::::::::	chr12:6857426-6857689(-)$1	263	216	232	18.6000
CNNNNNFFFFFFKKFF	chr6:114292061-114292334(-)$1	273	107	123	23.2000
::::::::::::::::	chr11:57585430-57585663(+)$1	233	72	88	20.0000
obb:::::::::::::	chr2:168811865-168812105(-)$1	240	140	156	18.1000
pppppffffff::eee	chr19:56206586-56206912(+)$1	326	226	242	19.9000
::::::CCC~~~~EEE	chr19:45496375-45496662(+)$1	287	138	154	20.3000
::::::::::::::::	chr17:80708689-80708914(+)$1	225	95	111	25.2000
::::::::::::::::	chrX:53965398-53965697(-)$1	299	123	139	20.2000
g[ddddddddbb$$$$	chr12:57606525-57606760(+)$1	235	159	175	22.8000
DD::::::::::::::	chr22:36678422-36678644(-)$1	222	58	74	25.7000
\FFFFFF}CCC}FFFF	chr12:56506656-56506918(+)$1	262	138	154	21.6000

#DB
..))))......(((.	chr7:72416677-72416974(+)$1	1	117	133	25.7000
.........((.((((	chr5:141693101-141693410(-)$1	1	10	26	24.1000
((..............	chr3:128533313-128533558(+)$1	1	111	127	18.5000
.....)))........	chr13:113537286-113537534(+)$1	1	31	47	23.0000
))).............	chr15:67835406-67835748(+)$1	1	114	130	27.9000
)...)))).)))))))	chr19:43012790-43013041(-)$1	1	56	72	22.1000
..((.((.........	chr22:36678444-36678714(-)$1	1	128	144	25.7000
..........(((((.	chr19:18731493-18731792(+)$1	1	227	243	23.1000
.)))))))........	chr20:43059470-43059734(+)$1	1	172	188	21.5000
................	chr9:139942813-139943040(-)$1	1	36	52	22.9000
............((.(	chr11:2159800-2160030(-)$1	1	85	101	23.7000
((.........(((..	chr11:121501247-121501502(+)$1	1	112	128	20.4000
.....(((((..((((	chrX:53406777-53407060(-)$1	1	78	94	18.4000
....((((..((((((	chrX:129191018-129191322(+)$1	1	149	165	17.0000
((((.((..(.(((((	chr12:57606428-57606653(+)$1	1	163	179	19.2000
..((.(((((((..((	chr17:30264096-30264345(+)$1	1	16	32	24.3000
((.(............	chr17:8063190-8063435(-)$1	1	118	134	18.7000
((((((..........	chr14:21561426-21561744(-)$1	1	130	146	23.0000
).)).)))))......	chr9:131395756-131396010(+)$1	1	120	136	20.1000
((..............	chr7:917483-917724(+)$1	1	62	78	21.4000
................	chr20:307670-307907(+)$1	1	33	49	22.0000
................	chr12:16035345-16035605(+)$1	1	62	78	20.2000
................	chr7:4306822-4307145(+)$1	1	60	76	24.8000
................	chr11:2159862-2160066(-)$1	1	121	137	23.7000
)))...))..(((((.	chr16:24942374-24942673(-)$1	1	118	134	20.5000
....))))))......	chr6:16761430-16761684(-)$1	1	194	210	29.7000
((..............	chr7:137563921-137564144(-)$1	1	45	61	21.5000
)))))))..((.((.(	chr6:29913283-29913538(+)$1	1	93	109	18.7000
(.((..........((	chr11:2159626-2159833(-)$1	1	7	23	19.6000
................	chr11:2159866-2160073(-)$1	1	128	144	23.7000
................	chr12:64541143-64541400(+)$1	1	60	76	19.0000
................	chr3:33155446-33155708(+)$1	1	69	85	23.1000
................	chr11:43365762-43366030(+)$1	1	133	149	20.8000
................	chr7:116863129-116863420(+)$1	1	16	32	19.0000
))))))).........	chr14:23794784-23795070(+)$1	1	184	200	21.0000
................	chr19:54942531-54942836(+)$1	1	51	67	20.2000
.)))).))))))))).	chr19:1257557-1257813(+)$1	1	104	120	18.6000
(((((((...((((((	chr17:7190097-7190359(+)$1	1	104	120	20.5000
))).))).........	chr1:160061112-160061365(-)$1	1	97	113	19.7000
................	chr12:6857426-6857689(-)$1	1	216	232	18.6000
(.....((((((..((	chr6:114292061-114292334(-)$1	1	107	123	23.2000
................	chr11:57585430-57585663(+)$1	1	72	88	20.0000
.)).............	chr2:168811865-168812105(-)$1	1	140	156	18.1000
.....))))))..(((	chr19:56206586-56206912(+)$1	1	226	242	19.9000
......)))....)))	chr19:45496375-45496662(+)$1	1	138	154	20.3000
................	chr17:80708689-80708914(+)$1	1	95	111	25.2000
................	chrX:53965398-53965697(-)$1	1	123	139	20.2000
(.((((((((((....	chr12:57606525-57606760(+)$1	1	159	175	22.8000
((..............	chr22:36678422-36678644(-)$1	1	58	74	25.7000
.)))))).))).))))	chr12:56506656-56506918(+)$1	1	138	154	21.6000

#PSSM
C : 0.56	c : 0.19	u : 0.14	U : 0.08	A : 0.02	
C : 0.50	c : 0.32	U : 0.06	A : 0.06	G : 0.04	u : 0.02	
C : 0.60	c : 0.25	u : 0.08	U : 0.06	
C : 0.54	c : 0.30	U : 0.08	G : 0.04	u : 0.02	g : 0.02	
U : 0.44	u : 0.25	A : 0.12	C : 0.08	c : 0.08	G : 0.02	
C : 0.56	c : 0.34	U : 0.08	A : 0.02	
C : 0.46	c : 0.23	A : 0.10	u : 0.08	U : 0.06	G : 0.04	g : 0.02	
C : 0.54	c : 0.27	U : 0.10	u : 0.04	a : 0.02	A : 0.02	
C : 0.56	c : 0.27	A : 0.08	u : 0.04	U : 0.02	a : 0.02	
C : 0.54	c : 0.30	U : 0.10	u : 0.04	A : 0.02	
C : 0.34	c : 0.23	A : 0.19	U : 0.10	u : 0.06	a : 0.04	G : 0.02	
U : 0.34	u : 0.18	C : 0.16	A : 0.12	c : 0.10	a : 0.04	G : 0.04	g : 0.02	
U : 0.46	u : 0.30	C : 0.16	c : 0.04	G : 0.04	
C : 0.60	c : 0.34	U : 0.04	G : 0.02	
C : 0.58	c : 0.25	a : 0.06	U : 0.04	A : 0.04	g : 0.02	
C : 0.64	c : 0.32	u : 0.02	U : 0.02	

#score	1082.6000000000015
#seq	50
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_CDS_m2_run1.nuc.txt

#NT
UCUGGAGGUG	chr22:50873206-50873495(+)$1	289	23	33	14.3636
GGUGGAGGUG	chr2:178082332-178082600(+)$1	268	189	199	21.9090
CCUGGAGGUG	chr12:132402893-132403188(+)$1	295	61	71	14.5454
GGCGGAGCUG	chr9:131012905-131013182(+)$1	277	45	55	15.2727
GAUGGAUGUG	chr11:63883792-63884116(-)$1	324	152	162	14.3636
gggggagggg	chr19:10222193-10222511(+)$1	318	148	158	16.1818
CGGGGAGGUG	chr3:23851852-23852198(+)$1	346	170	180	15.1818
GCUGGGGGUG	chr19:2270369-2270619(+)$1	250	148	158	15.2727
GGAGGAGCUG	chr19:49611263-49611519(+)$1	256	40	50	15.2727
GGGGGAGGCG	chr12:111180378-111180616(-)$1	238	184	194	15.8181
GGUGGAUGUU	chr11:62284743-62284981(-)$1	238	129	139	13.6363
AGUGGACGUG	chr22:50020333-50020616(-)$1	283	82	92	13.2727
GGCCGAGGUG	chr19:41306991-41307298(+)$1	307	106	116	15.0909
GGUGGAGCUG	chr16:85646881-85647134(+)$1	253	94	104	17.7272
GGUAGAGGUG	chr7:127669214-127669508(+)$1	294	6	16	17.5454
GGUGUAGGUG	chr11:114310160-114310499(+)$1	339	126	136	17.2727
GGGGGCGGUG	chr19:10406896-10407146(+)$1	250	56	66	15.7272
GGUGAAGGCG	chr1:155290197-155290461(+)$1	264	40	50	13.7272
GCUGGCGGUG	chr19:2270539-2270774(+)$1	235	178	188	15.0909
GAUGGAGGUA	chrM:14198-14404(-)$1	206	20	30	14.1818
GGUGGAGGGA	chr8:25315646-25315947(-)$1	301	91	101	14.4545
ggugguggug	chr16:31201529-31201783(+)$1	254	104	114	18.1818
GGAGGAGGGG	chr15:80215322-80215641(-)$1	319	136	146	16.1818
GUUGGGGGUG	chr1:155658019-155658304(-)$1	285	111	121	14.7272
GAAGGAGGUG	chr11:62284959-62285221(-)$1	262	205	215	15.9090
GGUGGACGGG	chr19:2444260-2444555(-)$1	295	203	213	14.4545
GGUUGAUGUG	chr7:151216370-151216699(-)$1	329	63	73	13.4545
GGAGGAGGUG	chr11:82879789-82880150(+)$1	361	111	121	19.4545
GCUAGAGGUG	chr16:31501949-31502342(-)$1	393	126	136	14.4545
ggugguggug	chr16:31201503-31201720(+)$1	217	130	140	18.1818
GGUGGAGGUG	chr7:127670137-127670418(+)$1	281	258	268	21.9090
GGCGGAGGGG	chr7:100027501-100027786(+)$1	285	212	222	16.1818
GGAGGAGAUG	chr6:31732092-31732354(+)$1	262	158	168	15.2727
CGUGGAGGUC	chr1:153615728-153615942(+)$1	214	45	55	13.2727
ggccgaggug	chr9:101558485-101558795(-)$1	310	174	184	15.0909
gguggaggug	chr16:31196314-31196540(+)$1	226	22	32	21.9090
GUCGGAGGUG	chr15:80214902-80215226(-)$1	324	32	42	15.8181
GGUGGGGGUG	chr11:419624-419919(-)$1	295	122	132	18.3636
gguggaggug	chr2:178081530-178081768(+)$1	238	68	78	21.9090
GGUGGAGGGG	chr6:31730659-31730979(+)$1	320	105	115	18.6363
GGGGGAGAUG	chr13:114144754-114145075(-)$1	321	84	94	15.2727
GGUGGGGGAG	chr11:62286041-62286294(-)$1	253	153	163	14.6363
GGUGGUUGUG	chr1:46775726-46775967(+)$1	241	16	26	14.1818
ggcggaggug	chr17:47841168-47841485(-)$1	317	63	73	19.4545
GCUGGAGAUG	chr17:80789372-80789673(+)$1	301	59	69	14.6363
GGUGGAGGCG	chr19:41771144-41771436(+)$1	292	124	134	18.2727
GCUGGAAGUG	chr3:9876764-9877116(+)$1	352	45	55	14.5454
GGCGGAGGGG	chrX:41193773-41194056(+)$1	283	30	40	16.1818
GGAGGAGGUU	chr22:19838613-19838881(-)$1	268	80	90	15.1818
GGUGAAGGUG	chr12:90028698-90029128(-)$1	430	132	142	17.3636
gguggaggug	chr2:178081487-178081730(+)$1	243	111	121	21.9090
GCUGGCGGUG	chr19:2270574-2270799(+)$1	225	143	153	15.0909
GGGGGAGGUA	chr22:19431809-19432073(-)$1	264	94	104	15.2727
GGGGGAGGAG	chr16:2871146-2871481(+)$1	335	103	113	15.7272

#otherMatches

#Struct PSSM
KBB:ccc[a[	chr2:54197715-54197990(-)$1	275	39	49	15.9090
dd::::EEEE	chr22:50873206-50873495(+)$1	289	23	33	14.3636
BYYEEEEECC	chr2:178082332-178082600(+)$1	268	189	199	21.9090
LLLDDDD{BB	chr12:132402893-132403188(+)$1	295	61	71	14.5454
ddddbbqqqq	chr9:131012905-131013182(+)$1	277	45	55	15.2727
fffqqqqqqq	chr11:63883792-63884116(-)$1	324	152	162	14.3636
eee%%%%%%e	chr19:10222193-10222511(+)$1	318	148	158	16.1818
eEEEEE}JJJ	chr3:23851852-23852198(+)$1	346	170	180	15.1818
a[a[ffffff	chr19:2270369-2270619(+)$1	250	148	158	15.2727
BB{BBKKDDD	chr19:49611263-49611519(+)$1	256	40	50	15.2727
ccc4444bbf	chr12:111180378-111180616(-)$1	238	184	194	15.8181
bb]dddd]dd	chr11:62284743-62284981(-)$1	238	129	139	13.6363
!bb[bb[bbn	chr22:50020333-50020616(-)$1	283	82	92	13.2727
d[ccceeeee	chr19:41306991-41307298(+)$1	307	106	116	15.0909
a]ffffffee	chr16:85646881-85647134(+)$1	253	94	104	17.7272
{AKKDDDDdd	chr7:127669214-127669508(+)$1	294	6	16	17.5454
JJJJJJJJJJ	chr11:114310160-114310499(+)$1	339	126	136	17.2727
hhhhhhssss	chr19:10406896-10407146(+)$1	250	56	66	15.7272
EEEELLLCCC	chr1:155290197-155290461(+)$1	264	40	50	13.7272
GGGG}CCC}B	chr19:2270539-2270774(+)$1	235	178	188	15.0909
eee[a(((((	chrM:14198-14404(-)$1	206	20	30	14.1818
ddd:::::::	chr8:25315646-25315947(-)$1	301	91	101	14.4545
sssssssbb]	chr16:31201529-31201783(+)$1	254	104	114	18.1818
ezzzzzzzzz	chr15:80215322-80215641(-)$1	319	136	146	16.1818
[=========	chr1:155658019-155658304(-)$1	285	111	121	14.7272
c333dddd]d	chr11:62284959-62285221(-)$1	262	205	215	15.9090
dddd22dddd	chr19:2444260-2444555(-)$1	295	203	213	14.4545
eee:cccfff	chr7:151216370-151216699(-)$1	329	63	73	13.4545
ffffff22cc	chr11:82879789-82880150(+)$1	361	111	121	19.4545
fff::::::C	chr16:31501949-31502342(-)$1	393	126	136	14.4545
sssssssbb]	chr16:31201503-31201720(+)$1	217	130	140	18.1818
ee22gggggg	chr7:127670137-127670418(+)$1	281	258	268	21.9090
dddd::====	chr7:100027501-100027786(+)$1	285	212	222	16.1818
HHHHHHHH??	chr6:31732092-31732354(+)$1	262	158	168	15.2727
[bb[ccc$$$	chr1:153615728-153615942(+)$1	214	45	55	13.2727
ddddnnnnnd	chr9:101558485-101558795(-)$1	310	174	184	15.0909
CC{ALLLEEE	chr16:31196314-31196540(+)$1	226	22	32	21.9090
CCC:iiiiii	chr15:80214902-80215226(-)$1	324	32	42	15.8181
]dddd::JJJ	chr11:419624-419919(-)$1	295	122	132	18.3636
pppppppbb]	chr2:178081530-178081768(+)$1	238	68	78	21.9090
ffff======	chr6:31730659-31730979(+)$1	320	105	115	18.6363
[a[a!!ccc#	chr13:114144754-114145075(-)$1	321	84	94	15.2727
hh22gggggg	chr11:62286041-62286294(-)$1	253	153	163	14.6363
ccc]eeeee:	chr1:46775726-46775967(+)$1	241	16	26	14.1818
eeeemmmmee	chr17:47841168-47841485(-)$1	317	63	73	19.4545
eeeqqqqqqq	chr17:80789372-80789673(+)$1	301	59	69	14.6363
=:a[======	chr19:41771144-41771436(+)$1	292	124	134	18.2727
CCCCNNNNNF	chr3:9876764-9877116(+)$1	352	45	55	14.5454
]ccc]a]a]e	chrX:41193773-41194056(+)$1	283	30	40	16.1818
vvvbb]iiii	chr22:19838613-19838881(-)$1	268	80	90	15.1818
====333bb]	chr12:90028698-90029128(-)$1	430	132	142	17.3636
44ffffff44	chr2:178081487-178081730(+)$1	243	111	121	21.9090
ppppeeeeeG	chr19:2270574-2270799(+)$1	225	143	153	15.0909
JJJJJJJJJN	chr22:19431809-19432073(-)$1	264	94	104	15.2727
dddd[ccc[e	chr16:2871146-2871481(+)$1	335	103	113	15.7272

#DB
.((.(((.(.	chr2:54197715-54197990(-)$1	1	39	49	15.9090
))....((((	chr22:50873206-50873495(+)$1	1	23	33	14.3636
)..)))))))	chr2:178082332-178082600(+)$1	1	189	199	21.9090
...((((.((	chr12:132402893-132403188(+)$1	1	61	71	14.5454
((((((....	chr9:131012905-131013182(+)$1	1	45	55	15.2727
(((.......	chr11:63883792-63884116(-)$1	1	152	162	14.3636
(((......(	chr19:10222193-10222511(+)$1	1	148	158	16.1818
)))))).)))	chr3:23851852-23852198(+)$1	1	170	180	15.1818
(.(.((((((	chr19:2270369-2270619(+)$1	1	148	158	15.2727
((.((..(((	chr19:49611263-49611519(+)$1	1	40	50	15.2727
)))....))(	chr12:111180378-111180616(-)$1	1	184	194	15.8181
)).)))).))	chr11:62284743-62284981(-)$1	1	129	139	13.6363
.((.((.((.	chr22:50020333-50020616(-)$1	1	82	92	13.2727
(.((((((((	chr19:41306991-41307298(+)$1	1	106	116	15.0909
).))))))((	chr16:85646881-85647134(+)$1	1	94	104	17.7272
.(..((((((	chr7:127669214-127669508(+)$1	1	6	16	17.5454
))))))))))	chr11:114310160-114310499(+)$1	1	126	136	17.2727
((((((....	chr19:10406896-10407146(+)$1	1	56	66	15.7272
((((...(((	chr1:155290197-155290461(+)$1	1	40	50	13.7272
)))).))).)	chr19:2270539-2270774(+)$1	1	178	188	15.0909
(((.(.....	chrM:14198-14404(-)$1	1	20	30	14.1818
))).......	chr8:25315646-25315947(-)$1	1	91	101	14.4545
.......)).	chr16:31201529-31201783(+)$1	1	104	114	18.1818
(.........	chr15:80215322-80215641(-)$1	1	136	146	16.1818
.(((((((((	chr1:155658019-155658304(-)$1	1	111	121	14.7272
)...)))).)	chr11:62284959-62285221(-)$1	1	205	215	15.9090
))))..))))	chr19:2444260-2444555(-)$1	1	203	213	14.4545
))).((((((	chr7:151216370-151216699(-)$1	1	63	73	13.4545
))))))..))	chr11:82879789-82880150(+)$1	1	111	121	19.4545
)))......(	chr16:31501949-31502342(-)$1	1	126	136	14.4545
.......)).	chr16:31201503-31201720(+)$1	1	130	140	18.1818
))..))))))	chr7:127670137-127670418(+)$1	1	258	268	21.9090
))))..((((	chr7:100027501-100027786(+)$1	1	212	222	16.1818
))))))))..	chr6:31732092-31732354(+)$1	1	158	168	15.2727
.((.(((...	chr1:153615728-153615942(+)$1	1	45	55	13.2727
((((.....)	chr9:101558485-101558795(-)$1	1	174	184	15.0909
((.(...(((	chr16:31196314-31196540(+)$1	1	22	32	21.9090
(((.((((((	chr15:80214902-80215226(-)$1	1	32	42	15.8181
.))))..(((	chr11:419624-419919(-)$1	1	122	132	18.3636
.......)).	chr2:178081530-178081768(+)$1	1	68	78	21.9090
))))))))))	chr6:31730659-31730979(+)$1	1	105	115	18.6363
.(.(..(((.	chr13:114144754-114145075(-)$1	1	84	94	15.2727
))..))))))	chr11:62286041-62286294(-)$1	1	153	163	14.6363
))).))))).	chr1:46775726-46775967(+)$1	1	16	26	14.1818
((((....))	chr17:47841168-47841485(-)$1	1	63	73	19.4545
(((.......	chr17:80789372-80789673(+)$1	1	59	69	14.6363
).(.((((((	chr19:41771144-41771436(+)$1	1	124	134	18.2727
((((.....(	chr3:9876764-9877116(+)$1	1	45	55	14.5454
.))).).).)	chrX:41193773-41194056(+)$1	1	30	40	16.1818
...)).))))	chr22:19838613-19838881(-)$1	1	80	90	15.1818
))))...)).	chr12:90028698-90029128(-)$1	1	132	142	17.3636
..))))))..	chr2:178081487-178081730(+)$1	1	111	121	21.9090
....))))))	chr19:2270574-2270799(+)$1	1	143	153	15.0909
(((((((((.	chr22:19431809-19432073(-)$1	1	94	104	15.2727
((((.(((.(	chr16:2871146-2871481(+)$1	1	103	113	15.7272

#PSSM
G : 0.74	g : 0.16	C : 0.05	U : 0.01	A : 0.01	
G : 0.60	g : 0.16	C : 0.14	A : 0.05	U : 0.03	
U : 0.52	G : 0.10	A : 0.10	C : 0.09	u : 0.09	c : 0.03	a : 0.01	g : 0.01	
G : 0.76	g : 0.14	A : 0.03	C : 0.01	U : 0.01	c : 0.01	
G : 0.78	g : 0.16	A : 0.03	U : 0.01	
A : 0.69	a : 0.10	G : 0.07	C : 0.05	u : 0.03	g : 0.01	U : 0.01	
G : 0.70	g : 0.16	U : 0.07	C : 0.03	A : 0.01	
G : 0.72	g : 0.16	C : 0.05	A : 0.05	
U : 0.63	u : 0.14	G : 0.10	C : 0.05	A : 0.03	g : 0.01	
G : 0.72	g : 0.16	A : 0.05	U : 0.03	C : 0.01	

#score	892.9090909090908
#seq	55
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_UTR_m1_run2.nuc.txt

#NT
GAGG	chr16:28124071-28124325(-)$1	254	103	107	12.0000
GAGG	chr3:12626360-12626606(-)$1	246	56	60	12.0000
GAGG	chr16:89627053-89627262(+)$1	209	64	68	12.0000
GAGG	chr20:34329717-34329963(-)$1	246	142	146	12.0000
GAGG	chr1:1019327-1019593(-)$1	266	147	151	12.0000
GAGG	chr9:139720173-139720424(+)$1	251	107	111	12.0000
GAGG	chr1:25570564-25570773(-)$1	209	79	83	12.0000
GAGG	chr3:9773721-9773935(+)$1	214	91	95	12.0000
GAGG	chr16:67227316-67227534(+)$1	218	77	81	12.0000
GAGG	chr19:19105154-19105416(-)$1	262	199	203	12.0000
GAGG	chr17:40927256-40927544(+)$1	288	194	198	12.0000
GAGG	chr19:47228058-47228314(-)$1	256	79	83	12.0000
GAGG	chr20:2638079-2638321(+)$1	242	98	102	12.0000
GAGG	chr20:33530583-33530823(-)$1	240	75	79	12.0000
GAGG	chr22:22899247-22899474(-)$1	227	64	68	12.0000
GAGG	chr3:48640945-48641211(-)$1	266	102	106	12.0000
GAGG	chr19:42410854-42411059(+)$1	205	6	10	12.0000
GAGG	chr6:26281667-26281964(-)$1	297	186	190	12.0000
gagg	chr19:40761047-40761325(-)$1	278	69	73	12.0000
GAGG	chr7:155089842-155090113(+)$1	271	203	207	12.0000
GAGG	chr16:1544154-1544362(+)$1	208	25	29	12.0000
GAGG	chr3:44841827-44842081(+)$1	254	34	38	12.0000
GAGG	chr16:30106240-30106526(-)$1	286	231	235	12.0000
GAGG	chr6:74230559-74230778(-)$1	219	197	201	12.0000
GAGG	chr12:53861525-53861767(+)$1	242	83	87	12.0000
GAGG	chr21:45726535-45726756(+)$1	221	99	103	12.0000
GAGG	chr2:24247057-24247290(+)$1	233	81	85	12.0000
GAGG	chr17:80223414-80223662(-)$1	248	13	17	12.0000
GAGG	chr12:131357000-131357255(+)$1	255	23	27	12.0000
GAGG	chr22:19052202-19052463(-)$1	261	125	129	12.0000
GAGG	chr17:27209594-27209829(-)$1	235	179	183	12.0000
GAGG	chr6:161533561-161533834(+)$1	273	176	180	12.0000
GAGG	chr5:34915912-34916148(+)$1	236	39	43	12.0000
GAGG	chr17:74732054-74732293(-)$1	239	27	31	12.0000
gagg	chr14:102549192-102549424(-)$1	232	211	215	12.0000
GAGG	chr17:80037349-80037588(-)$1	239	110	114	12.0000
GAGG	chr2:131102815-131103108(+)$1	293	177	181	12.0000
GAGG	chr17:71202899-71203120(+)$1	221	71	75	12.0000
GAGG	chr7:102988076-102988337(+)$1	261	61	65	12.0000
GAGG	chr12:133202786-133203024(-)$1	238	10	14	12.0000
GAGG	chr16:23505489-23505724(-)$1	235	159	163	12.0000
GAGG	chr22:20754947-20755192(+)$1	245	16	20	12.0000
GAGG	chr6:126332298-126332541(+)$1	243	130	134	12.0000
GAGG	chr22:35796100-35796358(+)$1	258	57	61	12.0000
GAGG	chr16:57792894-57793186(-)$1	292	14	18	12.0000
GAGG	chr5:179032824-179033040(+)$1	216	203	207	12.0000
GAGG	chr1:1326570-1326785(-)$1	215	29	33	12.0000
GAGG	chr6:43495685-43495998(-)$1	313	54	58	12.0000
GAGG	chr5:180669068-180669274(-)$1	206	154	158	12.0000
GAGG	chr1:40204491-40204811(+)$1	320	34	38	12.0000
gagg	chr17:79632487-79632758(-)$1	271	31	35	12.0000
gagg	chr17:34868624-34868885(-)$1	261	30	34	12.0000
GAGG	chr11:46404281-46404527(+)$1	246	80	84	12.0000
GAGG	chr7:6088296-6088546(-)$1	250	80	84	12.0000
GAGG	chr19:50303306-50303517(+)$1	211	20	24	12.0000
GAGG	chr1:46656006-46656255(-)$1	249	22	26	12.0000
GAGG	chr2:242207773-242207992(-)$1	219	56	60	12.0000
GAGG	chr19:55567909-55568121(-)$1	212	127	131	12.0000
GAGG	chr20:2638033-2638239(+)$1	206	144	148	12.0000
GAGG	chr3:47870388-47870646(+)$1	258	21	25	12.0000
GAGG	chr19:58331212-58331418(+)$1	206	2	6	12.0000
GAGG	chr12:124092096-124092319(+)$1	223	67	71	12.0000
GAGG	chr1:23885273-23885526(-)$1	253	122	126	12.0000
GAGG	chr6:41909046-41909289(-)$1	243	4	8	12.0000
GAGG	chr22:20849923-20850148(-)$1	225	111	115	12.0000
GAGG	chr16:30012750-30013004(+)$1	254	55	59	12.0000
GAGG	chr16:74682979-74683251(-)$1	272	199	203	12.0000
gagg	chr16:2142065-2142328(-)$1	263	25	29	12.0000
GAGG	chr17:77078083-77078288(+)$1	205	24	28	12.0000
GAGG	chr17:47004174-47004449(+)$1	275	234	238	12.0000
GAGG	chr19:44272914-44273221(-)$1	307	124	128	12.0000
GAGG	chr17:47013476-47013741(-)$1	265	151	155	12.0000
GAGG	chr15:91503627-91503833(+)$1	206	115	119	12.0000
GAGG	chr17:79682923-79683157(+)$1	234	188	192	12.0000
GAGG	chr4:41937177-41937398(+)$1	221	173	177	12.0000
GAGG	chr22:39712571-39712811(-)$1	240	17	21	12.0000
GAGG	chr5:176981102-176981332(-)$1	230	11	15	12.0000
GAGG	chr3:42674954-42675200(+)$1	246	126	130	12.0000
GAGG	chr19:42364814-42365023(+)$1	209	116	120	12.0000
GAGG	chrX:153668382-153668626(+)$1	244	106	110	12.0000

#otherMatches

#Struct PSSM
IIII	chr12:113616637-113616897(-)$1	260	6	10	12.0000
eeee	chr16:28124071-28124325(-)$1	254	103	107	12.0000
bbdd	chr3:12626360-12626606(-)$1	246	56	60	12.0000
[ddd	chr16:89627053-89627262(+)$1	209	64	68	12.0000
cc]d	chr20:34329717-34329963(-)$1	246	142	146	12.0000
a]cc	chr1:1019327-1019593(-)$1	266	147	151	12.0000
cccm	chr9:139720173-139720424(+)$1	251	107	111	12.0000
::EE	chr1:25570564-25570773(-)$1	209	79	83	12.0000
e[bb	chr3:9773721-9773935(+)$1	214	91	95	12.0000
eeee	chr16:67227316-67227534(+)$1	218	77	81	12.0000
EYYB	chr19:19105154-19105416(-)$1	262	199	203	12.0000
HHHH	chr17:40927256-40927544(+)$1	288	194	198	12.0000
e[bb	chr19:47228058-47228314(-)$1	256	79	83	12.0000
JJJJ	chr20:2638079-2638321(+)$1	242	98	102	12.0000
neee	chr20:33530583-33530823(-)$1	240	75	79	12.0000
dddd	chr22:22899247-22899474(-)$1	227	64	68	12.0000
""ee	chr3:48640945-48641211(-)$1	266	102	106	12.0000
DDEE	chr19:42410854-42411059(+)$1	205	6	10	12.0000
EEEE	chr6:26281667-26281964(-)$1	297	186	190	12.0000
JJJJ	chr19:40761047-40761325(-)$1	278	69	73	12.0000
llld	chr7:155089842-155090113(+)$1	271	203	207	12.0000
KKEE	chr16:1544154-1544362(+)$1	208	25	29	12.0000
efff	chr3:44841827-44842081(+)$1	254	34	38	12.0000
DDDD	chr16:30106240-30106526(-)$1	286	231	235	12.0000
====	chr6:74230559-74230778(-)$1	219	197	201	12.0000
d[cc	chr12:53861525-53861767(+)$1	242	83	87	12.0000
dddd	chr21:45726535-45726756(+)$1	221	99	103	12.0000
ddd3	chr2:24247057-24247290(+)$1	233	81	85	12.0000
dddd	chr17:80223414-80223662(-)$1	248	13	17	12.0000
FFFF	chr12:131357000-131357255(+)$1	255	23	27	12.0000
DDDD	chr22:19052202-19052463(-)$1	261	125	129	12.0000
FFFF	chr17:27209594-27209829(-)$1	235	179	183	12.0000
cccc	chr6:161533561-161533834(+)$1	273	176	180	12.0000
::::	chr5:34915912-34916148(+)$1	236	39	43	12.0000
gggg	chr17:74732054-74732293(-)$1	239	27	31	12.0000
ff]b	chr14:102549192-102549424(-)$1	232	211	215	12.0000
=:dd	chr17:80037349-80037588(-)$1	239	110	114	12.0000
eeee	chr2:131102815-131103108(+)$1	293	177	181	12.0000
mmcc	chr17:71202899-71203120(+)$1	221	71	75	12.0000
e"""	chr7:102988076-102988337(+)$1	261	61	65	12.0000
{CCC	chr12:133202786-133203024(-)$1	238	10	14	12.0000
eeee	chr16:23505489-23505724(-)$1	235	159	163	12.0000
dddc	chr22:20754947-20755192(+)$1	245	16	20	12.0000
eeee	chr6:126332298-126332541(+)$1	243	130	134	12.0000
oood	chr22:35796100-35796358(+)$1	258	57	61	12.0000
GGGG	chr16:57792894-57793186(-)$1	292	14	18	12.0000
FFFF	chr5:179032824-179033040(+)$1	216	203	207	12.0000
FFF:	chr1:1326570-1326785(-)$1	215	29	33	12.0000
ffff	chr6:43495685-43495998(-)$1	313	54	58	12.0000
ff]d	chr5:180669068-180669274(-)$1	206	154	158	12.0000
dddd	chr1:40204491-40204811(+)$1	320	34	38	12.0000
iiii	chr17:79632487-79632758(-)$1	271	31	35	12.0000
HHHH	chr17:34868624-34868885(-)$1	261	30	34	12.0000
qqdd	chr11:46404281-46404527(+)$1	246	80	84	12.0000
f]cc	chr7:6088296-6088546(-)$1	250	80	84	12.0000
cFFF	chr19:50303306-50303517(+)$1	211	20	24	12.0000
GGGG	chr1:46656006-46656255(-)$1	249	22	26	12.0000
mmma	chr2:242207773-242207992(-)$1	219	56	60	12.0000
22ee	chr19:55567909-55568121(-)$1	212	127	131	12.0000
JJJJ	chr20:2638033-2638239(+)$1	206	144	148	12.0000
KKEE	chr3:47870388-47870646(+)$1	258	21	25	12.0000
eeem	chr19:58331212-58331418(+)$1	206	2	6	12.0000
gggg	chr12:124092096-124092319(+)$1	223	67	71	12.0000
g::F	chr1:23885273-23885526(-)$1	253	122	126	12.0000
E{DD	chr6:41909046-41909289(-)$1	243	4	8	12.0000
ffff	chr22:20849923-20850148(-)$1	225	111	115	12.0000
{CCC	chr16:30012750-30013004(+)$1	254	55	59	12.0000
CCEE	chr16:74682979-74683251(-)$1	272	199	203	12.0000
JJJJ	chr16:2142065-2142328(-)$1	263	25	29	12.0000
gggg	chr17:77078083-77078288(+)$1	205	24	28	12.0000
A}DD	chr17:47004174-47004449(+)$1	275	234	238	12.0000
JJJJ	chr19:44272914-44273221(-)$1	307	124	128	12.0000
gggg	chr17:47013476-47013741(-)$1	265	151	155	12.0000
cnnn	chr15:91503627-91503833(+)$1	206	115	119	12.0000
:DDD	chr17:79682923-79683157(+)$1	234	188	192	12.0000
eeeq	chr4:41937177-41937398(+)$1	221	173	177	12.0000
ff""	chr22:39712571-39712811(-)$1	240	17	21	12.0000
dnnn	chr5:176981102-176981332(-)$1	230	11	15	12.0000
mmhh	chr3:42674954-42675200(+)$1	246	126	130	12.0000
3eee	chr19:42364814-42365023(+)$1	209	116	120	12.0000
EEEf	chrX:153668382-153668626(+)$1	244	106	110	12.0000

#DB
((((	chr12:113616637-113616897(-)$1	1	6	10	12.0000
))))	chr16:28124071-28124325(-)$1	1	103	107	12.0000
((((	chr3:12626360-12626606(-)$1	1	56	60	12.0000
.(((	chr16:89627053-89627262(+)$1	1	64	68	12.0000
)).)	chr20:34329717-34329963(-)$1	1	142	146	12.0000
).))	chr1:1019327-1019593(-)$1	1	147	151	12.0000
(((.	chr9:139720173-139720424(+)$1	1	107	111	12.0000
..((	chr1:25570564-25570773(-)$1	1	79	83	12.0000
(.((	chr3:9773721-9773935(+)$1	1	91	95	12.0000
((((	chr16:67227316-67227534(+)$1	1	77	81	12.0000
)..)	chr19:19105154-19105416(-)$1	1	199	203	12.0000
))))	chr17:40927256-40927544(+)$1	1	194	198	12.0000
(.((	chr19:47228058-47228314(-)$1	1	79	83	12.0000
))))	chr20:2638079-2638321(+)$1	1	98	102	12.0000
.)))	chr20:33530583-33530823(-)$1	1	75	79	12.0000
))))	chr22:22899247-22899474(-)$1	1	64	68	12.0000
..((	chr3:48640945-48641211(-)$1	1	102	106	12.0000
((((	chr19:42410854-42411059(+)$1	1	6	10	12.0000
))))	chr6:26281667-26281964(-)$1	1	186	190	12.0000
((((	chr19:40761047-40761325(-)$1	1	69	73	12.0000
...)	chr7:155089842-155090113(+)$1	1	203	207	12.0000
..((	chr16:1544154-1544362(+)$1	1	25	29	12.0000
((((	chr3:44841827-44842081(+)$1	1	34	38	12.0000
))))	chr16:30106240-30106526(-)$1	1	231	235	12.0000
))))	chr6:74230559-74230778(-)$1	1	197	201	12.0000
(.((	chr12:53861525-53861767(+)$1	1	83	87	12.0000
))))	chr21:45726535-45726756(+)$1	1	99	103	12.0000
))).	chr2:24247057-24247290(+)$1	1	81	85	12.0000
((((	chr17:80223414-80223662(-)$1	1	13	17	12.0000
((((	chr12:131357000-131357255(+)$1	1	23	27	12.0000
))))	chr22:19052202-19052463(-)$1	1	125	129	12.0000
))))	chr17:27209594-27209829(-)$1	1	179	183	12.0000
))))	chr6:161533561-161533834(+)$1	1	176	180	12.0000
....	chr5:34915912-34916148(+)$1	1	39	43	12.0000
((((	chr17:74732054-74732293(-)$1	1	27	31	12.0000
)).)	chr14:102549192-102549424(-)$1	1	211	215	12.0000
).((	chr17:80037349-80037588(-)$1	1	110	114	12.0000
))))	chr2:131102815-131103108(+)$1	1	177	181	12.0000
..))	chr17:71202899-71203120(+)$1	1	71	75	12.0000
(...	chr7:102988076-102988337(+)$1	1	61	65	12.0000
.(((	chr12:133202786-133203024(-)$1	1	10	14	12.0000
((((	chr16:23505489-23505724(-)$1	1	159	163	12.0000
)))(	chr22:20754947-20755192(+)$1	1	16	20	12.0000
((((	chr6:126332298-126332541(+)$1	1	130	134	12.0000
...)	chr22:35796100-35796358(+)$1	1	57	61	12.0000
((((	chr16:57792894-57793186(-)$1	1	14	18	12.0000
))))	chr5:179032824-179033040(+)$1	1	203	207	12.0000
(((.	chr1:1326570-1326785(-)$1	1	29	33	12.0000
))))	chr6:43495685-43495998(-)$1	1	54	58	12.0000
)).)	chr5:180669068-180669274(-)$1	1	154	158	12.0000
((((	chr1:40204491-40204811(+)$1	1	34	38	12.0000
((((	chr17:79632487-79632758(-)$1	1	31	35	12.0000
((((	chr17:34868624-34868885(-)$1	1	30	34	12.0000
..))	chr11:46404281-46404527(+)$1	1	80	84	12.0000
).))	chr7:6088296-6088546(-)$1	1	80	84	12.0000
)(((	chr19:50303306-50303517(+)$1	1	20	24	12.0000
((((	chr1:46656006-46656255(-)$1	1	22	26	12.0000
...)	chr2:242207773-242207992(-)$1	1	56	60	12.0000
..))	chr19:55567909-55568121(-)$1	1	127	131	12.0000
))))	chr20:2638033-2638239(+)$1	1	144	148	12.0000
..((	chr3:47870388-47870646(+)$1	1	21	25	12.0000
(((.	chr19:58331212-58331418(+)$1	1	2	6	12.0000
))))	chr12:124092096-124092319(+)$1	1	67	71	12.0000
)..)	chr1:23885273-23885526(-)$1	1	122	126	12.0000
(.((	chr6:41909046-41909289(-)$1	1	4	8	12.0000
))))	chr22:20849923-20850148(-)$1	1	111	115	12.0000
.(((	chr16:30012750-30013004(+)$1	1	55	59	12.0000
))))	chr16:74682979-74683251(-)$1	1	199	203	12.0000
((((	chr16:2142065-2142328(-)$1	1	25	29	12.0000
((((	chr17:77078083-77078288(+)$1	1	24	28	12.0000
).))	chr17:47004174-47004449(+)$1	1	234	238	12.0000
))))	chr19:44272914-44273221(-)$1	1	124	128	12.0000
))))	chr17:47013476-47013741(-)$1	1	151	155	12.0000
(...	chr15:91503627-91503833(+)$1	1	115	119	12.0000
.)))	chr17:79682923-79683157(+)$1	1	188	192	12.0000
(((.	chr4:41937177-41937398(+)$1	1	173	177	12.0000
((..	chr22:39712571-39712811(-)$1	1	17	21	12.0000
(...	chr5:176981102-176981332(-)$1	1	11	15	12.0000
..))	chr3:42674954-42675200(+)$1	1	126	130	12.0000
.)))	chr19:42364814-42365023(+)$1	1	116	120	12.0000
((((	chrX:153668382-153668626(+)$1	1	106	110	12.0000

#PSSM
G : 0.93	g : 0.06	
A : 0.93	a : 0.06	
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_UTR_m3_run1.nuc.txt

#NT
CAUGGGG	chr16:4744640-4744925(+)$1	285	53	60	13.7272
GCUGGGG	chr14:105259204-105259495(-)$1	291	82	89	14.6363
CCUGGGC	chr16:87738792-87739095(-)$1	303	152	159	15.0000
CCUGGGC	chr19:18392190-18392415(-)$1	225	159	166	15.0000
CCUGGGG	chr7:150066650-150066963(+)$1	313	192	199	18.0909
CCUGGGG	chr11:61583453-61583743(-)$1	290	77	84	18.0909
GCUGGGG	chr16:447640-447883(+)$1	243	114	121	14.6363
GCUGGGG	chr1:205418920-205419162(-)$1	242	43	50	14.6363
CCUGGGC	chr12:390915-391151(-)$1	236	31	38	15.0000
CCUGGGG	chr3:49057757-49058043(-)$1	286	143	150	18.0909
CCUGGGG	chr7:150935657-150935886(+)$1	229	114	121	18.0909
CCUGGGG	chr19:46522367-46522729(+)$1	362	289	296	18.0909
CCUGGGG	chr1:36787418-36787740(+)$1	322	144	151	18.0909
CCUGGGG	chr17:45772994-45773315(+)$1	321	85	92	18.0909
UCUGGGG	chr17:46128250-46128543(+)$1	293	65	72	14.1818
CCUGGUG	chr3:49058276-49058574(-)$1	298	24	31	13.5454
CCUGGGG	chr20:61584238-61584506(+)$1	268	243	250	18.0909
CCUGGGA	chr19:46142209-46142551(-)$1	342	12	19	14.4545
CCUGGug	chr18:20798956-20799213(+)$1	257	144	151	13.5454
CCUGGGG	chr17:57917987-57918210(+)$1	223	166	173	18.0909
CCUGGGG	chr15:52971188-52971477(-)$1	289	256	263	18.0909
GCUGGGG	chr12:125270543-125270859(-)$1	316	6	13	14.6363
UCUGGGG	chr7:100027475-100027783(+)$1	308	283	290	14.1818
CCUGGGG	chr14:21484882-21485173(-)$1	291	32	39	18.0909
CCUGGGC	chr16:30014607-30014921(+)$1	314	40	47	15.0000
ccUGGGG	chr2:242447550-242447833(-)$1	283	178	185	18.0909
ccUGGGG	chr3:195635536-195635820(-)$1	284	95	102	18.0909
CCUGGGG	chr17:57918052-57918290(+)$1	238	101	108	18.0909
CCUGGGC	chr12:390957-391224(-)$1	267	46	53	15.0000
CCUGGGU	chr9:139904664-139905000(-)$1	336	10	17	14.5454
CCUGGGA	chr17:7082307-7082564(-)$1	257	25	32	14.4545
CAUGGGG	chr19:58991078-58991358(-)$1	280	88	95	13.7272
CCUGGGU	chr17:57918318-57918540(+)$1	222	203	210	14.5454
CCUGAGG	chr16:87739093-87739355(-)$1	262	198	205	13.4545
CAUGGGG	chr16:2579858-2580126(+)$1	268	101	108	13.7272
CCUGGGG	chr9:35690529-35690784(-)$1	255	217	224	18.0909
CCUGGGG	chr17:57917964-57918187(+)$1	223	189	196	18.0909
ACUGGGG	chr16:87738165-87738428(-)$1	263	155	162	14.0909
CCUGGGG	chr19:50168009-50168263(-)$1	254	218	225	18.0909
CCUGGGG	chr16:24802021-24802339(+)$1	318	196	203	18.0909
CCUGGAG	chr16:2579518-2579772(+)$1	254	174	181	13.4545
CCUGGGC	chr9:95475763-95476078(-)$1	315	42	49	15.0000
CCUGGGG	chr3:100428681-100428980(+)$1	299	162	169	18.0909
CCUGGGG	chr3:49058407-49058718(-)$1	311	106	113	18.0909
GCUGGGG	chr19:1104347-1104641(+)$1	294	130	137	14.6363
CCUGGGG	chr13:113863076-113863347(+)$1	271	9	16	18.0909
CCUGGGC	chr3:48664362-48664659(-)$1	297	257	264	15.0000
CCUGGGG	chr7:150935686-150935935(+)$1	249	85	92	18.0909
CGUGGGG	chr20:57467327-57467612(+)$1	285	49	56	13.5454
GCUGGGG	chr1:205418896-205419120(-)$1	224	1	8	14.6363
CCUGGGC	chr8:126011311-126011561(+)$1	250	53	60	15.0000
GCUGGGG	chr2:55646579-55646907(-)$1	328	19	26	14.6363
CCUGGGU	chrX:151125757-151126017(-)$1	260	22	29	14.5454
CCUGAGG	chr2:202001789-202002080(+)$1	291	21	28	13.4545

#otherMatches

#Struct PSSM
44ggggg	chr17:80708888-80709159(+)$1	271	145	152	18.0909
fffa]cc	chr16:4744640-4744925(+)$1	285	53	60	13.7272
cccoooo	chr14:105259204-105259495(-)$1	291	82	89	14.6363
$$ggggg	chr16:87738792-87739095(-)$1	303	152	159	15.0000
cc!!ddd	chr19:18392190-18392415(-)$1	225	159	166	15.0000
ggggggg	chr7:150066650-150066963(+)$1	313	192	199	18.0909
cccqqqq	chr11:61583453-61583743(-)$1	290	77	84	18.0909
llleeee	chr16:447640-447883(+)$1	243	114	121	14.6363
GGGGGGG	chr1:205418920-205419162(-)$1	242	43	50	14.6363
cceeeee	chr12:390915-391151(-)$1	236	31	38	15.0000
mgggggg	chr3:49057757-49058043(-)$1	286	143	150	18.0909
]eeeeee	chr7:150935657-150935886(+)$1	229	114	121	18.0909
gggg]gg	chr19:46522367-46522729(+)$1	362	289	296	18.0909
DDD:ddd	chr1:36787418-36787740(+)$1	322	144	151	18.0909
CC{FFFF	chr17:45772994-45773315(+)$1	321	85	92	18.0909
d]ggggg	chr17:46128250-46128543(+)$1	293	65	72	14.1818
{GGGGGG	chr3:49058276-49058574(-)$1	298	24	31	13.5454
DDDD:ff	chr20:61584238-61584506(+)$1	268	243	250	18.0909
ggggg[b	chr19:46142209-46142551(-)$1	342	12	19	14.4545
qqqffff	chr18:20798956-20799213(+)$1	257	144	151	13.5454
ggggggg	chr17:57917987-57918210(+)$1	223	166	173	18.0909
EEEE}EE	chr15:52971188-52971477(-)$1	289	256	263	18.0909
iiiiiii	chr12:125270543-125270859(-)$1	316	6	13	14.6363
===cccm	chr7:100027475-100027783(+)$1	308	283	290	14.1818
dddd22c	chr14:21484882-21485173(-)$1	291	32	39	18.0909
ddddqqq	chr16:30014607-30014921(+)$1	314	40	47	15.0000
HHHHHHH	chr2:242447550-242447833(-)$1	283	178	185	18.0909
HH}DDDD	chr3:195635536-195635820(-)$1	284	95	102	18.0909
ggggggg	chr17:57918052-57918290(+)$1	238	101	108	18.0909
nnneeee	chr12:390957-391224(-)$1	267	46	53	15.0000
ddda[cc	chr9:139904664-139905000(-)$1	336	10	17	14.5454
ffffff!	chr17:7082307-7082564(-)$1	257	25	32	14.4545
b]eeeee	chr19:58991078-58991358(-)$1	280	88	95	13.7272
bmmmmbb	chr17:57918318-57918540(+)$1	222	203	210	14.5454
::hhhhh	chr16:87739093-87739355(-)$1	262	198	205	13.4545
fffffcc	chr16:2579858-2580126(+)$1	268	101	108	13.7272
eeee]dd	chr9:35690529-35690784(-)$1	255	217	224	18.0909
::FFFFF	chr17:57917964-57918187(+)$1	223	189	196	18.0909
fff]bbD	chr16:87738165-87738428(-)$1	263	155	162	14.0909
HHH||||	chr19:50168009-50168263(-)$1	254	218	225	18.0909
}EEEEEY	chr16:24802021-24802339(+)$1	318	196	203	18.0909
fnnnnnf	chr16:2579518-2579772(+)$1	254	174	181	13.4545
#eeeee!	chr9:95475763-95476078(-)$1	315	42	49	15.0000
cdddd[a	chr3:100428681-100428980(+)$1	299	162	169	18.0909
iiiiiii	chr3:49058407-49058718(-)$1	311	106	113	18.0909
ccc[eee	chr19:1104347-1104641(+)$1	294	130	137	14.6363
cccccco	chr13:113863076-113863347(+)$1	271	9	16	18.0909
ellleee	chr3:48664362-48664659(-)$1	297	257	264	15.0000
]eeeeef	chr7:150935686-150935935(+)$1	249	85	92	18.0909
e%%%%%%	chr20:57467327-57467612(+)$1	285	49	56	13.5454
GGGGGGG	chr1:205418896-205419120(-)$1	224	1	8	14.6363
=======	chr8:126011311-126011561(+)$1	250	53	60	15.0000
dddmmmm	chr2:55646579-55646907(-)$1	328	19	26	14.6363
dd[dddd	chrX:151125757-151126017(-)$1	260	22	29	14.5454
eeemmmm	chr2:202001789-202002080(+)$1	291	21	28	13.4545

#DB
..)))))	chr17:80708888-80709159(+)$1	1	145	152	18.0909
)))).))	chr16:4744640-4744925(+)$1	1	53	60	13.7272
(((....	chr14:105259204-105259495(-)$1	1	82	89	14.6363
..(((((	chr16:87738792-87739095(-)$1	1	152	159	15.0000
((..(((	chr19:18392190-18392415(-)$1	1	159	166	15.0000
(((((((	chr7:150066650-150066963(+)$1	1	192	199	18.0909
(((....	chr11:61583453-61583743(-)$1	1	77	84	18.0909
...))))	chr16:447640-447883(+)$1	1	114	121	14.6363
(((((((	chr1:205418920-205419162(-)$1	1	43	50	14.6363
))(((((	chr12:390915-391151(-)$1	1	31	38	15.0000
.))))))	chr3:49057757-49058043(-)$1	1	143	150	18.0909
.))))))	chr7:150935657-150935886(+)$1	1	114	121	18.0909
)))).))	chr19:46522367-46522729(+)$1	1	289	296	18.0909
(((.(((	chr1:36787418-36787740(+)$1	1	144	151	18.0909
((.((((	chr17:45772994-45773315(+)$1	1	85	92	18.0909
).)))))	chr17:46128250-46128543(+)$1	1	65	72	14.1818
.((((((	chr3:49058276-49058574(-)$1	1	24	31	13.5454
)))).((	chr20:61584238-61584506(+)$1	1	243	250	18.0909
(((((.(	chr19:46142209-46142551(-)$1	1	12	19	14.4545
...))))	chr18:20798956-20799213(+)$1	1	144	151	13.5454
)))))))	chr17:57917987-57918210(+)$1	1	166	173	18.0909
)))).))	chr15:52971188-52971477(-)$1	1	256	263	18.0909
(((((((	chr12:125270543-125270859(-)$1	1	6	13	14.6363
)))(((.	chr7:100027475-100027783(+)$1	1	283	290	14.1818
))))..)	chr14:21484882-21485173(-)$1	1	32	39	18.0909
((((...	chr16:30014607-30014921(+)$1	1	40	47	15.0000
)))))))	chr2:242447550-242447833(-)$1	1	178	185	18.0909
)).))))	chr3:195635536-195635820(-)$1	1	95	102	18.0909
)))))))	chr17:57918052-57918290(+)$1	1	101	108	18.0909
...))))	chr12:390957-391224(-)$1	1	46	53	15.0000
)))(.((	chr9:139904664-139905000(-)$1	1	10	17	14.5454
((((((.	chr17:7082307-7082564(-)$1	1	25	32	14.4545
).)))))	chr19:58991078-58991358(-)$1	1	88	95	13.7272
(....))	chr17:57918318-57918540(+)$1	1	203	210	14.5454
..(((((	chr16:87739093-87739355(-)$1	1	198	205	13.4545
(((((((	chr16:2579858-2580126(+)$1	1	101	108	13.7272
)))).))	chr9:35690529-35690784(-)$1	1	217	224	18.0909
..)))))	chr17:57917964-57918187(+)$1	1	189	196	18.0909
))).)))	chr16:87738165-87738428(-)$1	1	155	162	14.0909
)))....	chr19:50168009-50168263(-)$1	1	218	225	18.0909
.))))).	chr16:24802021-24802339(+)$1	1	196	203	18.0909
(.....)	chr16:2579518-2579772(+)$1	1	174	181	13.4545
.(((((.	chr9:95475763-95476078(-)$1	1	42	49	15.0000
)((((.(	chr3:100428681-100428980(+)$1	1	162	169	18.0909
(((((((	chr3:49058407-49058718(-)$1	1	106	113	18.0909
(((.(((	chr19:1104347-1104641(+)$1	1	130	137	14.6363
)))(((.	chr13:113863076-113863347(+)$1	1	9	16	18.0909
(...)))	chr3:48664362-48664659(-)$1	1	257	264	15.0000
.))))))	chr7:150935686-150935935(+)$1	1	85	92	18.0909
(......	chr20:57467327-57467612(+)$1	1	49	56	13.5454
(((((((	chr1:205418896-205419120(-)$1	1	1	8	14.6363
)))))))	chr8:126011311-126011561(+)$1	1	53	60	15.0000
(((....	chr2:55646579-55646907(-)$1	1	19	26	14.6363
((.((((	chrX:151125757-151126017(-)$1	1	22	29	14.5454
(((....	chr2:202001789-202002080(+)$1	1	21	28	13.4545

#PSSM
C : 0.78	G : 0.12	U : 0.03	c : 0.03	A : 0.01	
C : 0.89	A : 0.05	c : 0.03	G : 0.01	
U : 1.00	
G : 1.00	
G : 0.96	A : 0.03	
G : 0.94	U : 0.01	u : 0.01	A : 0.01	
G : 0.74	C : 0.14	U : 0.05	A : 0.03	g : 0.01	

#score	875.7272727272733
#seq	55
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_UTR_m3_run1.nuc.txt

#NT
CUGGG	chr1:19653733-19654007(+)$1	274	41	46	15.0000
CUGGG	chr19:14675797-14676036(+)$1	239	16	21	15.0000
CUGGG	chr17:76968402-76968620(-)$1	218	191	196	15.0000
CUGGG	chr19:45419466-45419683(+)$1	217	145	150	15.0000
CUGGG	chr11:71146331-71146570(-)$1	239	95	100	15.0000
CUGGG	chr16:3071578-3071791(+)$1	213	51	56	15.0000
CUGGG	chr3:14173015-14173252(+)$1	237	7	12	15.0000
CUGGG	chr13:24190042-24190284(+)$1	242	31	36	15.0000
CUGGG	chr15:73995272-73995528(+)$1	256	55	60	15.0000
CUGGG	chr14:68156861-68157081(-)$1	220	32	37	15.0000
CUGGG	chr7:56141807-56142011(+)$1	204	16	21	15.0000
CUGGG	chr11:71146445-71146746(-)$1	301	7	12	15.0000
CUGGG	chr5:135398250-135398477(+)$1	227	137	142	15.0000
CUGGG	chr19:580278-580481(+)$1	203	38	43	15.0000
CUGGG	chr11:120099713-120099984(+)$1	271	110	115	15.0000
CUGGG	chr17:26890733-26891002(-)$1	269	13	18	15.0000
CUGGG	chr5:135394677-135394886(+)$1	209	30	35	15.0000
CUGGG	chr6:31901556-31901834(+)$1	278	128	133	15.0000
CUGGG	chr14:95080771-95081021(+)$1	250	34	39	15.0000
CUGGG	chr17:42152992-42153315(+)$1	323	152	157	15.0000
CUGGG	chr12:50152065-50152275(+)$1	210	191	196	15.0000
CUGGG	chr3:183960316-183960566(-)$1	250	112	117	15.0000
CUGGG	chr6:31901366-31901584(+)$1	218	49	54	15.0000
CUGGG	chr11:62396249-62396490(-)$1	241	111	116	15.0000
CUGGG	chr16:5127397-5127636(+)$1	239	148	153	15.0000
CUGGG	chr13:24189923-24190188(+)$1	265	150	155	15.0000
CUGGG	chr11:6638756-6638977(-)$1	221	198	203	15.0000
CUGGG	chr2:216226691-216226899(-)$1	208	125	130	15.0000
CUGGG	chr15:72492792-72493054(-)$1	262	8	13	15.0000
CUGGG	chr12:50152160-50152364(+)$1	204	96	101	15.0000
CUGGG	chr14:95088605-95088824(+)$1	219	145	150	15.0000
CUGGG	chr6:31896494-31896710(+)$1	216	67	72	15.0000
CUGGG	chr1:201112846-201113068(-)$1	222	147	152	15.0000
CUGGG	chr14:94849216-94849422(-)$1	206	115	120	15.0000
CUGGG	chr13:24189988-24190237(+)$1	249	85	90	15.0000
CUGGG	chr6:31827415-31827779(-)$1	364	14	19	15.0000
CUGGG	chr12:56119844-56120097(-)$1	253	227	232	15.0000
CUGGG	chr11:1774932-1775142(-)$1	210	62	67	15.0000
CUGGG	chr11:62397993-62398244(-)$1	251	105	110	15.0000
CUGGG	chr17:79804236-79804469(-)$1	233	224	229	15.0000
CUGGG	chr14:68156994-68157236(-)$1	242	187	192	15.0000
CUGGG	chr1:52490093-52490334(-)$1	241	149	154	15.0000
CUGGG	chr17:1673201-1673444(+)$1	243	139	144	15.0000
CUGGG	chr11:118925877-118926119(-)$1	242	113	118	15.0000
CUGGG	chr20:30156914-30157226(+)$1	312	155	160	15.0000
CUGGG	chr19:580663-580882(+)$1	219	82	87	15.0000
CUGGG	chr15:72642789-72643092(-)$1	303	14	19	15.0000
CUGGG	chr11:118922918-118923163(-)$1	245	113	118	15.0000
CUGGG	chr3:195794344-195794629(-)$1	285	107	112	15.0000
CUGGG	chr3:14518676-14518951(+)$1	275	150	155	15.0000
CUGGG	chr7:99564507-99564777(-)$1	270	46	51	15.0000
CUGGG	chr17:42429991-42430258(+)$1	267	129	134	15.0000
CUGGG	chr3:133476668-133476887(+)$1	219	73	78	15.0000
CUGGG	chr17:76969006-76969225(-)$1	219	43	48	15.0000
CUGGG	chr16:29912748-29913043(+)$1	295	17	22	15.0000
CUGGG	chr2:162851374-162851632(-)$1	258	221	226	15.0000

#otherMatches

#Struct PSSM
iiii:	chr1:15545850-15546161(+)$1	311	174	179	15.0000
BB{CC	chr1:19653733-19654007(+)$1	274	41	46	15.0000
ggggg	chr19:14675797-14676036(+)$1	239	16	21	15.0000
GGGBB	chr17:76968402-76968620(-)$1	218	191	196	15.0000
GGGGG	chr19:45419466-45419683(+)$1	217	145	150	15.0000
ddd[a	chr11:71146331-71146570(-)$1	239	95	100	15.0000
eeHHH	chr16:3071578-3071791(+)$1	213	51	56	15.0000
lleee	chr3:14173015-14173252(+)$1	237	7	12	15.0000
c[ggg	chr13:24190042-24190284(+)$1	242	31	36	15.0000
g[ddd	chr15:73995272-73995528(+)$1	256	55	60	15.0000
DDDee	chr14:68156861-68157081(-)$1	220	32	37	15.0000
HHHHH	chr7:56141807-56142011(+)$1	204	16	21	15.0000
EEEEE	chr11:71146445-71146746(-)$1	301	7	12	15.0000
fhhhh	chr5:135398250-135398477(+)$1	227	137	142	15.0000
:::DD	chr19:580278-580481(+)$1	203	38	43	15.0000
=====	chr11:120099713-120099984(+)$1	271	110	115	15.0000
hhhhh	chr17:26890733-26891002(-)$1	269	13	18	15.0000
fffDD	chr5:135394677-135394886(+)$1	209	30	35	15.0000
!dddd	chr6:31901556-31901834(+)$1	278	128	133	15.0000
!!bbc	chr14:95080771-95081021(+)$1	250	34	39	15.0000
ebb[=	chr17:42152992-42153315(+)$1	323	152	157	15.0000
llggg	chr12:50152065-50152275(+)$1	210	191	196	15.0000
cccff	chr3:183960316-183960566(-)$1	250	112	117	15.0000
eeeee	chr6:31901366-31901584(+)$1	218	49	54	15.0000
555cc	chr11:62396249-62396490(-)$1	241	111	116	15.0000
2ffff	chr16:5127397-5127636(+)$1	239	148	153	15.0000
c[ggg	chr13:24189923-24190188(+)$1	265	150	155	15.0000
HHHHe	chr11:6638756-6638977(-)$1	221	198	203	15.0000
[dddd	chr2:216226691-216226899(-)$1	208	125	130	15.0000
$$fff	chr15:72492792-72493054(-)$1	262	8	13	15.0000
llhhh	chr12:50152160-50152364(+)$1	204	96	101	15.0000
eeee#	chr14:95088605-95088824(+)$1	219	145	150	15.0000
=====	chr6:31896494-31896710(+)$1	216	67	72	15.0000
hhhhh	chr1:201112846-201113068(-)$1	222	147	152	15.0000
ggggg	chr14:94849216-94849422(-)$1	206	115	120	15.0000
d[ggg	chr13:24189988-24190237(+)$1	249	85	90	15.0000
ggggg	chr6:31827415-31827779(-)$1	364	14	19	15.0000
fffff	chr12:56119844-56120097(-)$1	253	227	232	15.0000
eeeee	chr11:1774932-1775142(-)$1	210	62	67	15.0000
ddddm	chr11:62397993-62398244(-)$1	251	105	110	15.0000
DDDD:	chr17:79804236-79804469(-)$1	233	224	229	15.0000
:EEEE	chr14:68156994-68157236(-)$1	242	187	192	15.0000
iiiii	chr1:52490093-52490334(-)$1	241	149	154	15.0000
ggggg	chr17:1673201-1673444(+)$1	243	139	144	15.0000
d!!gg	chr11:118925877-118926119(-)$1	242	113	118	15.0000
bb]ee	chr20:30156914-30157226(+)$1	312	155	160	15.0000
c]ccc	chr19:580663-580882(+)$1	219	82	87	15.0000
KKA{G	chr15:72642789-72643092(-)$1	303	14	19	15.0000
&&hhh	chr11:118922918-118923163(-)$1	245	113	118	15.0000
ggggg	chr3:195794344-195794629(-)$1	285	107	112	15.0000
eeee]	chr3:14518676-14518951(+)$1	275	150	155	15.0000
c333c	chr7:99564507-99564777(-)$1	270	46	51	15.0000
fffff	chr17:42429991-42430258(+)$1	267	129	134	15.0000
fffff	chr3:133476668-133476887(+)$1	219	73	78	15.0000
gggdd	chr17:76969006-76969225(-)$1	219	43	48	15.0000
iiiii	chr16:29912748-29913043(+)$1	295	17	22	15.0000
ppbbd	chr2:162851374-162851632(-)$1	258	221	226	15.0000

#DB
)))).	chr1:15545850-15546161(+)$1	1	174	179	15.0000
((.((	chr1:19653733-19654007(+)$1	1	41	46	15.0000
(((((	chr19:14675797-14676036(+)$1	1	16	21	15.0000
)))))	chr17:76968402-76968620(-)$1	1	191	196	15.0000
)))))	chr19:45419466-45419683(+)$1	1	145	150	15.0000
(((.(	chr11:71146331-71146570(-)$1	1	95	100	15.0000
))(((	chr16:3071578-3071791(+)$1	1	51	56	15.0000
..)))	chr3:14173015-14173252(+)$1	1	7	12	15.0000
(.(((	chr13:24190042-24190284(+)$1	1	31	36	15.0000
(.(((	chr15:73995272-73995528(+)$1	1	55	60	15.0000
(((((	chr14:68156861-68157081(-)$1	1	32	37	15.0000
(((((	chr7:56141807-56142011(+)$1	1	16	21	15.0000
(((((	chr11:71146445-71146746(-)$1	1	7	12	15.0000
)((((	chr5:135398250-135398477(+)$1	1	137	142	15.0000
...((	chr19:580278-580481(+)$1	1	38	43	15.0000
)))))	chr11:120099713-120099984(+)$1	1	110	115	15.0000
(((((	chr17:26890733-26891002(-)$1	1	13	18	15.0000
)))((	chr5:135394677-135394886(+)$1	1	30	35	15.0000
.((((	chr6:31901556-31901834(+)$1	1	128	133	15.0000
..(((	chr14:95080771-95081021(+)$1	1	34	39	15.0000
(((.(	chr17:42152992-42153315(+)$1	1	152	157	15.0000
..)))	chr12:50152065-50152275(+)$1	1	191	196	15.0000
)))((	chr3:183960316-183960566(-)$1	1	112	117	15.0000
)))))	chr6:31901366-31901584(+)$1	1	49	54	15.0000
...))	chr11:62396249-62396490(-)$1	1	111	116	15.0000
.))))	chr16:5127397-5127636(+)$1	1	148	153	15.0000
(.(((	chr13:24189923-24190188(+)$1	1	150	155	15.0000
))))(	chr11:6638756-6638977(-)$1	1	198	203	15.0000
.((((	chr2:216226691-216226899(-)$1	1	125	130	15.0000
..(((	chr15:72492792-72493054(-)$1	1	8	13	15.0000
..)))	chr12:50152160-50152364(+)$1	1	96	101	15.0000
((((.	chr14:95088605-95088824(+)$1	1	145	150	15.0000
)))))	chr6:31896494-31896710(+)$1	1	67	72	15.0000
(((((	chr1:201112846-201113068(-)$1	1	147	152	15.0000
)))))	chr14:94849216-94849422(-)$1	1	115	120	15.0000
(.(((	chr13:24189988-24190237(+)$1	1	85	90	15.0000
)))))	chr6:31827415-31827779(-)$1	1	14	19	15.0000
(((((	chr12:56119844-56120097(-)$1	1	227	232	15.0000
(((((	chr11:1774932-1775142(-)$1	1	62	67	15.0000
((((.	chr11:62397993-62398244(-)$1	1	105	110	15.0000
)))).	chr17:79804236-79804469(-)$1	1	224	229	15.0000
.))))	chr14:68156994-68157236(-)$1	1	187	192	15.0000
(((((	chr1:52490093-52490334(-)$1	1	149	154	15.0000
)))))	chr17:1673201-1673444(+)$1	1	139	144	15.0000
(..((	chr11:118925877-118926119(-)$1	1	113	118	15.0000
)).))	chr20:30156914-30157226(+)$1	1	155	160	15.0000
).)))	chr19:580663-580882(+)$1	1	82	87	15.0000
..(.(	chr15:72642789-72643092(-)$1	1	14	19	15.0000
..(((	chr11:118922918-118923163(-)$1	1	113	118	15.0000
)))))	chr3:195794344-195794629(-)$1	1	107	112	15.0000
)))).	chr3:14518676-14518951(+)$1	1	150	155	15.0000
)...)	chr7:99564507-99564777(-)$1	1	46	51	15.0000
(((((	chr17:42429991-42430258(+)$1	1	129	134	15.0000
)))))	chr3:133476668-133476887(+)$1	1	73	78	15.0000
)))((	chr17:76969006-76969225(-)$1	1	43	48	15.0000
(((((	chr16:29912748-29913043(+)$1	1	17	22	15.0000
..)))	chr2:162851374-162851632(-)$1	1	221	226	15.0000

#PSSM
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	

#score	855.0000000000005
#seq	57
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_UTR_m3_run2.nuc.txt

#NT
UGCAGG	chr9:19378741-19378949(-)$1	208	28	34	14.2500
UGCAGA	chr17:8172764-8173017(+)$1	253	221	227	11.3333
uccagg	chr1:118069905-118070146(+)$1	241	18	24	10.8333
ugaagg	chr15:69698750-69698998(+)$1	248	37	43	10.5833
UGCAGU	chr5:64018211-64018431(-)$1	220	72	78	11.0833
UGCAGA	chr4:152024072-152024284(+)$1	212	122	128	11.3333
GGCAGG	chr13:100215249-100215458(+)$1	209	104	110	10.5833
UUCAGG	chr2:207024460-207024682(+)$1	222	30	36	10.9166
UGCAGG	chr9:19378710-19378941(-)$1	231	20	26	14.2500
UGCAGG	chr11:86048369-86048676(+)$1	307	46	52	14.2500
uccagg	chr1:118069877-118070105(+)$1	228	46	52	10.8333
uucagg	chrX:30885210-30885436(-)$1	226	96	102	10.9166
UGCAGG	chr19:41119452-41119735(+)$1	283	230	236	14.2500
UGCAGA	chr17:79524988-79525212(-)$1	224	194	200	11.3333
UGAAGG	chr12:25260648-25260895(+)$1	247	7	13	10.5833
UGCAGG	chrX:153662613-153662886(+)$1	273	130	136	14.2500
GGCAGG	chr16:70514518-70514724(-)$1	206	60	66	10.5833
UUCAGG	chr6:4116015-4116258(-)$1	243	77	83	10.9166
GGCAGG	chr1:27272637-27272957(+)$1	320	131	137	10.5833
UGCAGA	chr1:110134878-110135128(+)$1	250	179	185	11.3333
UGCAGG	chr9:19378749-19378959(-)$1	210	38	44	14.2500
UGCAGA	chr11:618786-618990(-)$1	204	0	6	11.3333
UGAAGG	chr6:32942369-32942572(+)$1	203	99	105	10.5833
UGCAGG	chr9:19378783-19378993(-)$1	210	72	78	14.2500
UGCAGU	chr13:28009666-28009905(+)$1	239	46	52	11.0833
UGAAGG	chr6:32942411-32942625(+)$1	214	57	63	10.5833
UGCAGU	chr7:5270938-5271220(+)$1	282	79	85	11.0833
UGCAGG	chr9:19378793-19378996(-)$1	203	75	81	14.2500
UGCAGG	chr17:4880247-4880504(-)$1	257	41	47	14.2500
UGCAGC	chr9:139760553-139760830(-)$1	277	3	9	10.6666
UUCAGG	chr8:48874560-48874774(+)$1	214	6	12	10.9166
UGCAGA	chr4:152024028-152024246(+)$1	218	166	172	11.3333
UGAAGG	chr2:97260523-97260802(-)$1	279	87	93	10.5833
UGCAGG	chr9:19378766-19378983(-)$1	217	62	68	14.2500
UUCAGG	chr6:4115939-4116194(-)$1	255	13	19	10.9166
UCCAGG	chr1:47130830-47131038(-)$1	208	72	78	10.8333
UUCAGG	chr6:4115994-4116215(-)$1	221	34	40	10.9166
GGCAGG	chr13:100215258-100215540(+)$1	282	95	101	10.5833
GGCAGG	chr17:7127538-7127784(+)$1	246	3	9	10.5833
GGCAGG	chr16:70514461-70514718(-)$1	257	54	60	10.5833
UGCAGG	chr9:19378803-19379010(-)$1	207	89	95	14.2500
UGCAGG	chr9:19378810-19379016(-)$1	206	95	101	14.2500
UGAAGG	chr6:32942372-32942577(+)$1	205	96	102	10.5833
UGCAGG	chr9:19378796-19379003(-)$1	207	82	88	14.2500
UCCAGG	chr3:127872417-127872700(+)$1	283	144	150	10.8333
UGCAGA	chr1:38464955-38465202(-)$1	247	23	29	11.3333
UGCAGA	chr4:152024046-152024272(+)$1	226	148	154	11.3333
UGCAGG	chr22:19711290-19711563(+)$1	273	81	87	14.2500
UGCAGA	chr11:618790-619008(-)$1	218	18	24	11.3333
UGCAGU	chr1:38471025-38471283(-)$1	258	117	123	11.0833
UGCAGU	chr5:64018253-64018463(-)$1	210	104	110	11.0833
UCCAGG	chr1:47130827-47131030(-)$1	203	64	70	10.8333
UUCAGG	chr1:53704023-53704272(-)$1	249	125	131	10.9166
UGCAGU	chr5:64018231-64018453(-)$1	222	94	100	11.0833
UCCAGG	chr9:140446425-140446714(+)$1	289	0	6	10.8333
UGCAGG	chr9:19378759-19378966(-)$1	207	45	51	14.2500
UGAAGG	chr6:32942405-32942611(+)$1	206	63	69	10.5833
gGCAGG	chr22:22221713-22221952(-)$1	239	22	28	10.5833
UGAAGG	chr17:43185552-43185799(+)$1	247	196	202	10.5833

#otherMatches

#Struct PSSM
ddd]cc	chr22:22221752-22221964(-)$1	212	34	40	10.5833
:FFFFF	chr9:19378741-19378949(-)$1	208	28	34	14.2500
iiiiii	chr17:8172764-8173017(+)$1	253	221	227	11.3333
ddEEEE	chr1:118069905-118070146(+)$1	241	18	24	10.8333
MMMMII	chr15:69698750-69698998(+)$1	248	37	43	10.5833
eggggg	chr5:64018211-64018431(-)$1	220	72	78	11.0833
[eeeee	chr4:152024072-152024284(+)$1	212	122	128	11.3333
II::::	chr13:100215249-100215458(+)$1	209	104	110	10.5833
::::DD	chr2:207024460-207024682(+)$1	222	30	36	10.9166
:FFFFF	chr9:19378710-19378941(-)$1	231	20	26	14.2500
JJJJJJ	chr11:86048369-86048676(+)$1	307	46	52	14.2500
dddd>>	chr1:118069877-118070105(+)$1	228	46	52	10.8333
nnnddd	chrX:30885210-30885436(-)$1	226	96	102	10.9166
e[bb[a	chr19:41119452-41119735(+)$1	283	230	236	14.2500
HHHHHH	chr17:79524988-79525212(-)$1	224	194	200	11.3333
CC{EEE	chr12:25260648-25260895(+)$1	247	7	13	10.5833
]adddd	chrX:153662613-153662886(+)$1	273	130	136	14.2500
ccc[cc	chr16:70514518-70514724(-)$1	206	60	66	10.5833
fffff4	chr6:4116015-4116258(-)$1	243	77	83	10.9166
g[cccq	chr1:27272637-27272957(+)$1	320	131	137	10.5833
eee:::	chr1:110134878-110135128(+)$1	250	179	185	11.3333
:FFFFF	chr9:19378749-19378959(-)$1	210	38	44	14.2500
cccqqq	chr11:618786-618990(-)$1	204	0	6	11.3333
:cccdd	chr6:32942369-32942572(+)$1	203	99	105	10.5833
hhhhhh	chr9:19378783-19378993(-)$1	210	72	78	14.2500
[eeeee	chr13:28009666-28009905(+)$1	239	46	52	11.0833
b333dd	chr6:32942411-32942625(+)$1	214	57	63	10.5833
ccc]ee	chr7:5270938-5271220(+)$1	282	79	85	11.0833
hhhhhh	chr9:19378793-19378996(-)$1	203	75	81	14.2500
KCCC{B	chr17:4880247-4880504(-)$1	257	41	47	14.2500
{EEEEE	chr9:139760553-139760830(-)$1	277	3	9	10.6666
:DDDDK	chr8:48874560-48874774(+)$1	214	6	12	10.9166
dd::::	chr4:152024028-152024246(+)$1	218	166	172	11.3333
%=====	chr2:97260523-97260802(-)$1	279	87	93	10.5833
iiiiii	chr9:19378766-19378983(-)$1	217	62	68	14.2500
{FFFFF	chr6:4115939-4116194(-)$1	255	13	19	10.9166
eeee[c	chr1:47130830-47131038(-)$1	208	72	78	10.8333
fffff4	chr6:4115994-4116215(-)$1	221	34	40	10.9166
:ddddm	chr13:100215258-100215540(+)$1	282	95	101	10.5833
::cccq	chr17:7127538-7127784(+)$1	246	3	9	10.5833
ccc[cc	chr16:70514461-70514718(-)$1	257	54	60	10.5833
hhhhhh	chr9:19378803-19379010(-)$1	207	89	95	14.2500
hhhhhh	chr9:19378810-19379016(-)$1	206	95	101	14.2500
:cccdd	chr6:32942372-32942577(+)$1	205	96	102	10.5833
hhhhhh	chr9:19378796-19379003(-)$1	207	82	88	14.2500
c22ddd	chr3:127872417-127872700(+)$1	283	144	150	10.8333
afffff	chr1:38464955-38465202(-)$1	247	23	29	11.3333
[eeeee	chr4:152024046-152024272(+)$1	226	148	154	11.3333
qqqbb]	chr22:19711290-19711563(+)$1	273	81	87	14.2500
fffqqq	chr11:618790-619008(-)$1	218	18	24	11.3333
:bb[ff	chr1:38471025-38471283(-)$1	258	117	123	11.0833
eggggg	chr5:64018253-64018463(-)$1	210	104	110	11.0833
eeee[c	chr1:47130827-47131030(-)$1	203	64	70	10.8333
bb!!cc	chr1:53704023-53704272(-)$1	249	125	131	10.9166
eggggg	chr5:64018231-64018453(-)$1	222	94	100	11.0833
CCC{BB	chr9:140446425-140446714(+)$1	289	0	6	10.8333
#ccc[g	chr9:19378759-19378966(-)$1	207	45	51	14.2500
b333dd	chr6:32942405-32942611(+)$1	206	63	69	10.5833
ennnnn	chr22:22221713-22221952(-)$1	239	22	28	10.5833
IIIIII	chr17:43185552-43185799(+)$1	247	196	202	10.5833

#DB
))).))	chr22:22221752-22221964(-)$1	1	34	40	10.5833
.(((((	chr9:19378741-19378949(-)$1	1	28	34	14.2500
))))))	chr17:8172764-8173017(+)$1	1	221	227	11.3333
))((((	chr1:118069905-118070146(+)$1	1	18	24	10.8333
....((	chr15:69698750-69698998(+)$1	1	37	43	10.5833
((((((	chr5:64018211-64018431(-)$1	1	72	78	11.0833
.(((((	chr4:152024072-152024284(+)$1	1	122	128	11.3333
((....	chr13:100215249-100215458(+)$1	1	104	110	10.5833
....((	chr2:207024460-207024682(+)$1	1	30	36	10.9166
.(((((	chr9:19378710-19378941(-)$1	1	20	26	14.2500
((((((	chr11:86048369-86048676(+)$1	1	46	52	14.2500
))))..	chr1:118069877-118070105(+)$1	1	46	52	10.8333
...)))	chrX:30885210-30885436(-)$1	1	96	102	10.9166
(.((.(	chr19:41119452-41119735(+)$1	1	230	236	14.2500
))))))	chr17:79524988-79525212(-)$1	1	194	200	11.3333
((.(((	chr12:25260648-25260895(+)$1	1	7	13	10.5833
.)))))	chrX:153662613-153662886(+)$1	1	130	136	14.2500
(((.((	chr16:70514518-70514724(-)$1	1	60	66	10.5833
))))).	chr6:4116015-4116258(-)$1	1	77	83	10.9166
(.(((.	chr1:27272637-27272957(+)$1	1	131	137	10.5833
)))...	chr1:110134878-110135128(+)$1	1	179	185	11.3333
.(((((	chr9:19378749-19378959(-)$1	1	38	44	14.2500
(((...	chr11:618786-618990(-)$1	1	0	6	11.3333
.(((((	chr6:32942369-32942572(+)$1	1	99	105	10.5833
))))))	chr9:19378783-19378993(-)$1	1	72	78	14.2500
.(((((	chr13:28009666-28009905(+)$1	1	46	52	11.0833
)...))	chr6:32942411-32942625(+)$1	1	57	63	10.5833
))).))	chr7:5270938-5271220(+)$1	1	79	85	11.0833
))))))	chr9:19378793-19378996(-)$1	1	75	81	14.2500
.(((.(	chr17:4880247-4880504(-)$1	1	41	47	14.2500
.(((((	chr9:139760553-139760830(-)$1	1	3	9	10.6666
.((((.	chr8:48874560-48874774(+)$1	1	6	12	10.9166
))....	chr4:152024028-152024246(+)$1	1	166	172	11.3333
.(((((	chr2:97260523-97260802(-)$1	1	87	93	10.5833
))))))	chr9:19378766-19378983(-)$1	1	62	68	14.2500
.(((((	chr6:4115939-4116194(-)$1	1	13	19	10.9166
((((.(	chr1:47130830-47131038(-)$1	1	72	78	10.8333
))))).	chr6:4115994-4116215(-)$1	1	34	40	10.9166
.((((.	chr13:100215258-100215540(+)$1	1	95	101	10.5833
..(((.	chr17:7127538-7127784(+)$1	1	3	9	10.5833
(((.((	chr16:70514461-70514718(-)$1	1	54	60	10.5833
))))))	chr9:19378803-19379010(-)$1	1	89	95	14.2500
))))))	chr9:19378810-19379016(-)$1	1	95	101	14.2500
.(((((	chr6:32942372-32942577(+)$1	1	96	102	10.5833
))))))	chr9:19378796-19379003(-)$1	1	82	88	14.2500
)..)))	chr3:127872417-127872700(+)$1	1	144	150	10.8333
((((((	chr1:38464955-38465202(-)$1	1	23	29	11.3333
.(((((	chr4:152024046-152024272(+)$1	1	148	154	11.3333
...)).	chr22:19711290-19711563(+)$1	1	81	87	14.2500
(((...	chr11:618790-619008(-)$1	1	18	24	11.3333
.((.((	chr1:38471025-38471283(-)$1	1	117	123	11.0833
((((((	chr5:64018253-64018463(-)$1	1	104	110	11.0833
((((.(	chr1:47130827-47131030(-)$1	1	64	70	10.8333
((..((	chr1:53704023-53704272(-)$1	1	125	131	10.9166
((((((	chr5:64018231-64018453(-)$1	1	94	100	11.0833
(((.((	chr9:140446425-140446714(+)$1	1	0	6	10.8333
.(((.(	chr9:19378759-19378966(-)$1	1	45	51	14.2500
)...))	chr6:32942405-32942611(+)$1	1	63	69	10.5833
(.....	chr22:22221713-22221952(-)$1	1	22	28	10.5833
))))))	chr17:43185552-43185799(+)$1	1	196	202	10.5833

#PSSM
U : 0.80	G : 0.09	u : 0.06	g : 0.03	
G : 0.76	U : 0.09	C : 0.06	c : 0.03	g : 0.01	u : 0.01	
C : 0.81	A : 0.11	c : 0.05	a : 0.01	
A : 0.93	a : 0.06	
G : 0.93	g : 0.06	
G : 0.66	A : 0.15	U : 0.09	g : 0.06	C : 0.01	

#score	703.6666666666679
#seq	60
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_transcript_m2_run1.nuc.txt

#NT
UGGG	chr7:1063697-1063951(-)$1	254	117	121	12.0000
UGGG	chr17:56408592-56408799(-)$1	207	21	25	12.0000
UGGG	chrX:151127219-151127420(-)$1	201	103	107	12.0000
UGGG	chr8:41514004-41514282(-)$1	278	24	28	12.0000
UGGG	chr7:1893655-1893898(-)$1	243	37	41	12.0000
UGGG	chr17:57918504-57918718(+)$1	214	19	23	12.0000
UGGG	chr6:32937050-32937307(+)$1	257	54	58	12.0000
UGGG	chr10:104196202-104196425(+)$1	223	167	171	12.0000
UGGG	chr3:38012701-38012959(+)$1	258	81	85	12.0000
UGGG	chrX:151126967-151127184(-)$1	217	12	16	12.0000
UGGG	chr2:17934532-17934846(-)$1	314	301	305	12.0000
UGGG	chr20:25202117-25202373(+)$1	256	144	148	12.0000
uggg	chr9:101554276-101554513(-)$1	237	9	13	12.0000
UGGG	chr9:96938559-96938764(+)$1	205	98	102	12.0000
UGGG	chr16:618516-618744(+)$1	228	5	9	12.0000
UGGG	chr16:15242543-15242808(-)$1	265	81	85	12.0000
UGGG	chr8:41517733-41518029(-)$1	296	77	81	12.0000
UGGG	chrX:151127013-151127226(-)$1	213	8	12	12.0000
UGGG	chr19:59084062-59084317(-)$1	255	84	88	12.0000
UGGG	chr22:19951193-19951406(+)$1	213	135	139	12.0000
UGGG	chr8:41517692-41517926(-)$1	234	60	64	12.0000
UGGG	chr13:52866286-52866581(-)$1	295	122	126	12.0000
UGGG	chr6:167412146-167412416(-)$1	270	258	262	12.0000
uggg	chr7:22627581-22627822(-)$1	241	92	96	12.0000
UGGG	chr3:49050262-49050495(+)$1	233	9	13	12.0000
UGGG	chr1:235273310-235273530(-)$1	220	13	17	12.0000
UGGG	chr6:27094956-27095164(-)$1	208	164	168	12.0000
UGGG	chrX:151126985-151127208(-)$1	223	36	40	12.0000
UGGG	chrX:24744620-24744867(+)$1	247	176	180	12.0000
uggg	chr5:149112356-149112591(+)$1	235	126	130	12.0000
UGGG	chr22:20074054-20074287(+)$1	233	206	210	12.0000
UGGG	chr17:56408732-56408948(-)$1	216	23	27	12.0000
UGGG	chr22:20073371-20073578(+)$1	207	150	154	12.0000
UGGG	chr7:25988777-25989019(-)$1	242	83	87	12.0000
UGGG	chr11:75046086-75046300(-)$1	214	83	87	12.0000
UGGG	chr16:14397767-14397988(+)$1	221	17	21	12.0000
UGGG	chr13:92003545-92003755(+)$1	210	36	40	12.0000
UGGG	chr22:42296449-42296707(+)$1	258	22	26	12.0000
UGGG	chr22:20023209-20023458(+)$1	249	34	38	12.0000
UGGG	chr19:13947319-13947536(-)$1	217	70	74	12.0000
UGGG	chr19:2270187-2270442(+)$1	255	8	12	12.0000
UGGG	chr9:96941043-96941282(+)$1	239	66	70	12.0000
UGGG	chr9:139564511-139564722(+)$1	211	10	14	12.0000
UGGG	chr22:19950664-19950947(+)$1	283	16	20	12.0000
UGGG	chr3:49058533-49058772(-)$1	239	45	49	12.0000
UGGG	chr22:20074297-20074557(+)$1	260	115	119	12.0000
UGGG	chr19:52196509-52196764(+)$1	255	63	67	12.0000
uggg	chr21:9957908-9958157(-)$1	249	127	131	12.0000
UGGG	chr3:49057636-49057863(-)$1	227	3	7	12.0000
UGGG	chr17:46657547-46657766(-)$1	219	49	53	12.0000
UGGG	chr16:69966926-69967169(+)$1	243	29	33	12.0000
UGGG	chr22:42296572-42296796(+)$1	224	18	22	12.0000
UGGG	chr12:54730972-54731183(+)$1	211	140	144	12.0000
UGGG	chr10:65132661-65132878(-)$1	217	81	85	12.0000
UGGG	chr17:56408770-56408974(-)$1	204	49	53	12.0000
UGGG	chr7:99954222-99954445(+)$1	223	2	6	12.0000
UGGG	chr1:3654628-3654882(-)$1	254	21	25	12.0000
UGGG	chr11:62622071-62622331(-)$1	260	83	87	12.0000
UGGG	chr22:19951470-19951729(+)$1	259	7	11	12.0000
uggg	chr7:5535362-5535625(-)$1	263	6	10	12.0000
UGGG	chr2:95825162-95825431(-)$1	269	146	150	12.0000
UGGG	chr22:22007473-22007706(+)$1	233	7	11	12.0000
UGGG	chr22:42296807-42297049(+)$1	242	53	57	12.0000
UGGG	chr9:111808475-111808730(-)$1	255	9	13	12.0000
UGGG	chr19:13261405-13261660(+)$1	255	8	12	12.0000
UGGG	chr7:1062057-1062296(-)$1	239	23	27	12.0000
UGGG	chr9:96938480-96938693(+)$1	213	5	9	12.0000
uggg	chr22:24497828-24498089(+)$1	261	70	74	12.0000
uggg	chr13:50621381-50621626(-)$1	245	74	78	12.0000
UGGG	chr16:88535282-88535521(+)$1	239	70	74	12.0000
uggg	chrX:109245999-109246257(+)$1	258	43	47	12.0000
UGGG	chr5:179046472-179046680(-)$1	208	71	75	12.0000
UGGG	chr9:139564522-139564782(+)$1	260	22	26	12.0000
UGGG	chr16:28877662-28877918(+)$1	256	90	94	12.0000
UGGG	chr17:27188463-27188683(-)$1	220	47	51	12.0000
UGGG	chr22:22006541-22006830(+)$1	289	59	63	12.0000
UGGG	chr9:96938825-96939050(+)$1	225	196	200	12.0000
UGGG	chr17:46656908-46657187(-)$1	279	163	167	12.0000
UGGG	chr12:54730881-54731134(+)$1	253	231	235	12.0000
uggg	chr1:50970802-50971063(-)$1	261	117	121	12.0000
UGGG	chr16:14397047-14397283(+)$1	236	86	90	12.0000
UGGG	chr14:105626502-105626744(-)$1	242	22	26	12.0000
UGGG	chr19:46522066-46522313(+)$1	247	47	51	12.0000
UGGG	chr11:66395751-66395999(+)$1	248	7	11	12.0000
UGGG	chr9:96938572-96938800(+)$1	228	85	89	12.0000

#otherMatches

#Struct PSSM
HHHH	chr16:2319584-2319873(+)$1	289	8	12	12.0000
gggg	chr7:1063697-1063951(-)$1	254	117	121	12.0000
eee[	chr17:56408592-56408799(-)$1	207	21	25	12.0000
{EEE	chrX:151127219-151127420(-)$1	201	103	107	12.0000
HHHH	chr8:41514004-41514282(-)$1	278	24	28	12.0000
c[al	chr7:1893655-1893898(-)$1	243	37	41	12.0000
mmmb	chr17:57918504-57918718(+)$1	214	19	23	12.0000
:ddd	chr6:32937050-32937307(+)$1	257	54	58	12.0000
b[cc	chr10:104196202-104196425(+)$1	223	167	171	12.0000
EEKK	chr3:38012701-38012959(+)$1	258	81	85	12.0000
dd""	chrX:151126967-151127184(-)$1	217	12	16	12.0000
hhhh	chr2:17934532-17934846(-)$1	314	301	305	12.0000
3ddd	chr20:25202117-25202373(+)$1	256	144	148	12.0000
a"""	chr9:101554276-101554513(-)$1	237	9	13	12.0000
=ggg	chr9:96938559-96938764(+)$1	205	98	102	12.0000
{HHH	chr16:618516-618744(+)$1	228	5	9	12.0000
====	chr16:15242543-15242808(-)$1	265	81	85	12.0000
EEEP	chr8:41517733-41518029(-)$1	296	77	81	12.0000
gggg	chrX:151127013-151127226(-)$1	213	8	12	12.0000
=bb[	chr19:59084062-59084317(-)$1	255	84	88	12.0000
22cc	chr22:19951193-19951406(+)$1	213	135	139	12.0000
gggg	chr8:41517692-41517926(-)$1	234	60	64	12.0000
eeee	chr13:52866286-52866581(-)$1	295	122	126	12.0000
FFFF	chr6:167412146-167412416(-)$1	270	258	262	12.0000
ccee	chr7:22627581-22627822(-)$1	241	92	96	12.0000
!bb[	chr3:49050262-49050495(+)$1	233	9	13	12.0000
lldd	chr1:235273310-235273530(-)$1	220	13	17	12.0000
CCDD	chr6:27094956-27095164(-)$1	208	164	168	12.0000
dd""	chrX:151126985-151127208(-)$1	223	36	40	12.0000
CC}F	chrX:24744620-24744867(+)$1	247	176	180	12.0000
==]c	chr5:149112356-149112591(+)$1	235	126	130	12.0000
ffff	chr22:20074054-20074287(+)$1	233	206	210	12.0000
oeee	chr17:56408732-56408948(-)$1	216	23	27	12.0000
ddmm	chr22:20073371-20073578(+)$1	207	150	154	12.0000
====	chr7:25988777-25989019(-)$1	242	83	87	12.0000
"===	chr11:75046086-75046300(-)$1	214	83	87	12.0000
:::D	chr16:14397767-14397988(+)$1	221	17	21	12.0000
====	chr13:92003545-92003755(+)$1	210	36	40	12.0000
!ggg	chr22:42296449-42296707(+)$1	258	22	26	12.0000
dddd	chr22:20023209-20023458(+)$1	249	34	38	12.0000
eeee	chr19:13947319-13947536(-)$1	217	70	74	12.0000
FFBB	chr19:2270187-2270442(+)$1	255	8	12	12.0000
b[cc	chr9:96941043-96941282(+)$1	239	66	70	12.0000
d%%%	chr9:139564511-139564722(+)$1	211	10	14	12.0000
gggf	chr22:19950664-19950947(+)$1	283	16	20	12.0000
]acc	chr3:49058533-49058772(-)$1	239	45	49	12.0000
{EEE	chr22:20074297-20074557(+)$1	260	115	119	12.0000
gggg	chr19:52196509-52196764(+)$1	255	63	67	12.0000
b"""	chr21:9957908-9958157(-)$1	249	127	131	12.0000
dddd	chr3:49057636-49057863(-)$1	227	3	7	12.0000
:ccc	chr17:46657547-46657766(-)$1	219	49	53	12.0000
FFFF	chr16:69966926-69967169(+)$1	243	29	33	12.0000
EEEE	chr22:42296572-42296796(+)$1	224	18	22	12.0000
JJJJ	chr12:54730972-54731183(+)$1	211	140	144	12.0000
====	chr10:65132661-65132878(-)$1	217	81	85	12.0000
oeee	chr17:56408770-56408974(-)$1	204	49	53	12.0000
::FF	chr7:99954222-99954445(+)$1	223	2	6	12.0000
JJJJ	chr1:3654628-3654882(-)$1	254	21	25	12.0000
dddd	chr11:62622071-62622331(-)$1	260	83	87	12.0000
Ebbn	chr22:19951470-19951729(+)$1	259	7	11	12.0000
gggg	chr7:5535362-5535625(-)$1	263	6	10	12.0000
A}EE	chr2:95825162-95825431(-)$1	269	146	150	12.0000
::a[	chr22:22007473-22007706(+)$1	233	7	11	12.0000
oeee	chr22:42296807-42297049(+)$1	242	53	57	12.0000
::::	chr9:111808475-111808730(-)$1	255	9	13	12.0000
DDDC	chr19:13261405-13261660(+)$1	255	8	12	12.0000
eeeF	chr7:1062057-1062296(-)$1	239	23	27	12.0000
fccc	chr9:96938480-96938693(+)$1	213	5	9	12.0000
B{EE	chr22:24497828-24498089(+)$1	261	70	74	12.0000
iii[	chr13:50621381-50621626(-)$1	245	74	78	12.0000
hhhh	chr16:88535282-88535521(+)$1	239	70	74	12.0000
g22b	chrX:109245999-109246257(+)$1	258	43	47	12.0000
]===	chr5:179046472-179046680(-)$1	208	71	75	12.0000
b[ff	chr9:139564522-139564782(+)$1	260	22	26	12.0000
[ccc	chr16:28877662-28877918(+)$1	256	90	94	12.0000
:ccc	chr17:27188463-27188683(-)$1	220	47	51	12.0000
!!cc	chr22:22006541-22006830(+)$1	289	59	63	12.0000
f::C	chr9:96938825-96939050(+)$1	225	196	200	12.0000
:ddd	chr17:46656908-46657187(-)$1	279	163	167	12.0000
dddd	chr12:54730881-54731134(+)$1	253	231	235	12.0000
ffff	chr1:50970802-50971063(-)$1	261	117	121	12.0000
===c	chr16:14397047-14397283(+)$1	236	86	90	12.0000
AKKA	chr14:105626502-105626744(-)$1	242	22	26	12.0000
qqbb	chr19:46522066-46522313(+)$1	247	47	51	12.0000
:EEE	chr11:66395751-66395999(+)$1	248	7	11	12.0000
=ggg	chr9:96938572-96938800(+)$1	228	85	89	12.0000

#DB
((((	chr16:2319584-2319873(+)$1	1	8	12	12.0000
))))	chr7:1063697-1063951(-)$1	1	117	121	12.0000
(((.	chr17:56408592-56408799(-)$1	1	21	25	12.0000
.(((	chrX:151127219-151127420(-)$1	1	103	107	12.0000
((((	chr8:41514004-41514282(-)$1	1	24	28	12.0000
(.(.	chr7:1893655-1893898(-)$1	1	37	41	12.0000
...)	chr17:57918504-57918718(+)$1	1	19	23	12.0000
.(((	chr6:32937050-32937307(+)$1	1	54	58	12.0000
(.((	chr10:104196202-104196425(+)$1	1	167	171	12.0000
((..	chr3:38012701-38012959(+)$1	1	81	85	12.0000
((..	chrX:151126967-151127184(-)$1	1	12	16	12.0000
))))	chr2:17934532-17934846(-)$1	1	301	305	12.0000
.)))	chr20:25202117-25202373(+)$1	1	144	148	12.0000
(...	chr9:101554276-101554513(-)$1	1	9	13	12.0000
((((	chr9:96938559-96938764(+)$1	1	98	102	12.0000
.(((	chr16:618516-618744(+)$1	1	5	9	12.0000
))))	chr16:15242543-15242808(-)$1	1	81	85	12.0000
(((.	chr8:41517733-41518029(-)$1	1	77	81	12.0000
((((	chrX:151127013-151127226(-)$1	1	8	12	12.0000
)((.	chr19:59084062-59084317(-)$1	1	84	88	12.0000
..))	chr22:19951193-19951406(+)$1	1	135	139	12.0000
))))	chr8:41517692-41517926(-)$1	1	60	64	12.0000
((((	chr13:52866286-52866581(-)$1	1	122	126	12.0000
))))	chr6:167412146-167412416(-)$1	1	258	262	12.0000
))))	chr7:22627581-22627822(-)$1	1	92	96	12.0000
.((.	chr3:49050262-49050495(+)$1	1	9	13	12.0000
..))	chr1:235273310-235273530(-)$1	1	13	17	12.0000
))))	chr6:27094956-27095164(-)$1	1	164	168	12.0000
((..	chrX:151126985-151127208(-)$1	1	36	40	12.0000
)).)	chrX:24744620-24744867(+)$1	1	176	180	12.0000
)).)	chr5:149112356-149112591(+)$1	1	126	130	12.0000
))))	chr22:20074054-20074287(+)$1	1	206	210	12.0000
.)))	chr17:56408732-56408948(-)$1	1	23	27	12.0000
((..	chr22:20073371-20073578(+)$1	1	150	154	12.0000
((((	chr7:25988777-25989019(-)$1	1	83	87	12.0000
.(((	chr11:75046086-75046300(-)$1	1	83	87	12.0000
...(	chr16:14397767-14397988(+)$1	1	17	21	12.0000
((((	chr13:92003545-92003755(+)$1	1	36	40	12.0000
.(((	chr22:42296449-42296707(+)$1	1	22	26	12.0000
))))	chr22:20023209-20023458(+)$1	1	34	38	12.0000
((((	chr19:13947319-13947536(-)$1	1	70	74	12.0000
((((	chr19:2270187-2270442(+)$1	1	8	12	12.0000
(.((	chr9:96941043-96941282(+)$1	1	66	70	12.0000
(...	chr9:139564511-139564722(+)$1	1	10	14	12.0000
((((	chr22:19950664-19950947(+)$1	1	16	20	12.0000
.)))	chr3:49058533-49058772(-)$1	1	45	49	12.0000
.(((	chr22:20074297-20074557(+)$1	1	115	119	12.0000
))))	chr19:52196509-52196764(+)$1	1	63	67	12.0000
(...	chr21:9957908-9958157(-)$1	1	127	131	12.0000
((((	chr3:49057636-49057863(-)$1	1	3	7	12.0000
.(((	chr17:46657547-46657766(-)$1	1	49	53	12.0000
((((	chr16:69966926-69967169(+)$1	1	29	33	12.0000
((((	chr22:42296572-42296796(+)$1	1	18	22	12.0000
))))	chr12:54730972-54731183(+)$1	1	140	144	12.0000
((((	chr10:65132661-65132878(-)$1	1	81	85	12.0000
.)))	chr17:56408770-56408974(-)$1	1	49	53	12.0000
..((	chr7:99954222-99954445(+)$1	1	2	6	12.0000
((((	chr1:3654628-3654882(-)$1	1	21	25	12.0000
((((	chr11:62622071-62622331(-)$1	1	83	87	12.0000
(((.	chr22:19951470-19951729(+)$1	1	7	11	12.0000
((((	chr7:5535362-5535625(-)$1	1	6	10	12.0000
).))	chr2:95825162-95825431(-)$1	1	146	150	12.0000
..(.	chr22:22007473-22007706(+)$1	1	7	11	12.0000
.)))	chr22:42296807-42297049(+)$1	1	53	57	12.0000
....	chr9:111808475-111808730(-)$1	1	9	13	12.0000
((((	chr19:13261405-13261660(+)$1	1	8	12	12.0000
)))(	chr7:1062057-1062296(-)$1	1	23	27	12.0000
((((	chr9:96938480-96938693(+)$1	1	5	9	12.0000
(.((	chr22:24497828-24498089(+)$1	1	70	74	12.0000
(((.	chr13:50621381-50621626(-)$1	1	74	78	12.0000
((((	chr16:88535282-88535521(+)$1	1	70	74	12.0000
)..)	chrX:109245999-109246257(+)$1	1	43	47	12.0000
.)))	chr5:179046472-179046680(-)$1	1	71	75	12.0000
(.((	chr9:139564522-139564782(+)$1	1	22	26	12.0000
.(((	chr16:28877662-28877918(+)$1	1	90	94	12.0000
.(((	chr17:27188463-27188683(-)$1	1	47	51	12.0000
..((	chr22:22006541-22006830(+)$1	1	59	63	12.0000
)..)	chr9:96938825-96939050(+)$1	1	196	200	12.0000
.(((	chr17:46656908-46657187(-)$1	1	163	167	12.0000
))))	chr12:54730881-54731134(+)$1	1	231	235	12.0000
))))	chr1:50970802-50971063(-)$1	1	117	121	12.0000
)))(	chr16:14397047-14397283(+)$1	1	86	90	12.0000
(..(	chr14:105626502-105626744(-)$1	1	22	26	12.0000
..))	chr19:46522066-46522313(+)$1	1	47	51	12.0000
.(((	chr11:66395751-66395999(+)$1	1	7	11	12.0000
((((	chr9:96938572-96938800(+)$1	1	85	89	12.0000

#PSSM
U : 0.89	u : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_transcript_m3_run2.nuc.txt

#NT
CUUUUAA	chr3:127788576-127788809(+)$1	233	19	26	14.3333
UUUUUAA	chr11:17153282-17153580(-)$1	298	45	52	17.6666
UUUUUAA	chr15:44707721-44708004(+)$1	283	132	139	17.6666
UUUUUAU	chr17:57915492-57915720(+)$1	228	28	35	13.7500
UUUUUAA	chr13:46627483-46627749(-)$1	266	77	84	17.6666
UUUUUAA	chr1:213037782-213038073(+)$1	291	85	92	17.6666
UUUUUGA	chr3:57557459-57557710(-)$1	251	68	75	13.2500
CUUUUAA	chr15:66587397-66587659(+)$1	262	190	197	14.3333
UUUUUAA	chr20:4833077-4833324(-)$1	247	150	157	17.6666
CUUUUAA	chr10:88863398-88863720(+)$1	322	256	263	14.3333
UCUUUAA	chr7:30054075-30054334(-)$1	259	36	43	13.4166
UUUUUCA	chr22:41368490-41368745(+)$1	255	109	116	13.0833
uuuuuaa	chr3:128338897-128339150(-)$1	253	89	96	17.6666
UUUUUAU	chr1:11083298-11083552(+)$1	254	100	107	13.7500
UUUUUAA	chr17:60023178-60023443(-)$1	265	68	75	17.6666
UUUUUAU	chr4:120219822-120220035(-)$1	213	16	23	13.7500
CUUUUAA	chr5:80365363-80365624(+)$1	261	217	224	14.3333
UUUUUAU	chr3:149093056-149093314(-)$1	258	115	122	13.7500
auuuuaa	chr2:36777953-36778224(+)$1	271	96	103	14.3333
UAUUUAA	chr3:145807147-145807432(-)$1	285	77	84	13.7500
uuuguaa	chr2:97877392-97877661(+)$1	269	212	219	13.5000
UUUUUAA	chr14:70235897-70236135(+)$1	238	109	116	17.6666
uuuuuaa	chr7:148700536-148700762(-)$1	226	192	199	17.6666
UUUGUAA	chr1:990364-990588(+)$1	224	39	46	13.5000
UUUUUAG	chr2:61413170-61413444(+)$1	274	113	120	13.4166
UUUUUAA	chr3:65455788-65456022(-)$1	234	183	190	17.6666
UAUUUAA	chr3:145788219-145788432(-)$1	213	20	27	13.7500
UUUUUGA	chr4:166419269-166419496(+)$1	227	2	9	13.2500
UUUUUAA	chr2:102796065-102796379(+)$1	314	77	84	17.6666
GUUUUAA	chr2:223783836-223784100(+)$1	264	252	259	14.0000
UAUUUAA	chr16:81583573-81583823(+)$1	250	17	24	13.7500
AUUUUAA	chr13:48835757-48836028(+)$1	271	35	42	14.3333
UUUUUAU	chr1:97250717-97250979(+)$1	262	99	106	13.7500
UUUUUAC	chr7:148523164-148523408(-)$1	244	1	8	13.5000
AUUUUAA	chr7:94298414-94298647(+)$1	233	92	99	14.3333
UUUUUAA	chr19:18390681-18390915(-)$1	234	152	159	17.6666
UUUUUAA	chr2:232323548-232323798(-)$1	250	181	188	17.6666
UUUGUAA	chr2:47387709-47387949(-)$1	240	95	102	13.5000
UUUUUAA	chr22:38203255-38203487(+)$1	232	47	54	17.6666
AUUUUAA	chr7:128409386-128409647(+)$1	261	198	205	14.3333
UUUUUAA	chr14:31175011-31175276(+)$1	265	87	94	17.6666
UUUUUGA	chr20:45976387-45976651(-)$1	264	187	194	13.2500
UUUUUAC	chr10:74789856-74790102(-)$1	246	101	108	13.5000
UUUGUAA	chr11:57575685-57575958(+)$1	273	137	144	13.5000
UUUUUAA	chr13:113541234-113541530(+)$1	296	104	111	17.6666
UUUCUAA	chr1:214161991-214162247(+)$1	256	17	24	13.2500
AUUUUAA	chr17:73163820-73164032(-)$1	212	18	25	14.3333
GUUUUAA	chr18:9954462-9954751(+)$1	289	33	40	14.0000
CUUUUAA	chr17:18111741-18112052(+)$1	311	265	272	14.3333
uuuuuaa	chr15:43445997-43446331(+)$1	334	100	107	17.6666
UUUAUAA	chr8:22879301-22879559(-)$1	258	83	90	13.2500
UUUUUAA	chr2:20401828-20402103(-)$1	275	240	247	17.6666
AUUUUAA	chr8:62593348-62593605(-)$1	257	220	227	14.3333
UGUUUAA	chr8:17721914-17722195(-)$1	281	132	139	13.5000
UUUUUAA	chrY:21756584-21756851(+)$1	267	259	266	17.6666
UUUUUAA	chr4:166263992-166264218(+)$1	226	78	85	17.6666
CUUUUAA	chr12:66357261-66357532(+)$1	271	80	87	14.3333
UGUUUAA	chr7:128411252-128411501(+)$1	249	98	105	13.5000
UAUUUAA	chr6:75964661-75964968(-)$1	307	24	31	13.7500

#otherMatches

#Struct PSSM
DKKEEEE	chr18:21119603-21119861(-)$1	258	59	66	13.7500
!!eeeee	chr3:127788576-127788809(+)$1	233	19	26	14.3333
:::::::	chr11:17153282-17153580(-)$1	298	45	52	17.6666
ZZDDDDZ	chr15:44707721-44708004(+)$1	283	132	139	17.6666
ee:::::	chr17:57915492-57915720(+)$1	228	28	35	13.7500
GGGGGGG	chr13:46627483-46627749(-)$1	266	77	84	17.6666
ff:::gg	chr1:213037782-213038073(+)$1	291	85	92	17.6666
:::::::	chr3:57557459-57557710(-)$1	251	68	75	13.2500
^^^^^^^	chr15:66587397-66587659(+)$1	262	190	197	14.3333
llddddi	chr20:4833077-4833324(-)$1	247	150	157	17.6666
!dddd!!	chr10:88863398-88863720(+)$1	322	256	263	14.3333
:::::==	chr7:30054075-30054334(-)$1	259	36	43	13.4166
ii"""cc	chr22:41368490-41368745(+)$1	255	109	116	13.0833
qqqqq==	chr3:128338897-128339150(-)$1	253	89	96	17.6666
rrrrhhh	chr1:11083298-11083552(+)$1	254	100	107	13.7500
7777777	chr17:60023178-60023443(-)$1	265	68	75	17.6666
ffffff[	chr4:120219822-120220035(-)$1	213	16	23	13.7500
:::ffff	chr5:80365363-80365624(+)$1	261	217	224	14.3333
:::::::	chr3:149093056-149093314(-)$1	258	115	122	13.7500
rrrrfff	chr2:36777953-36778224(+)$1	271	96	103	14.3333
f"""eee	chr3:145807147-145807432(-)$1	285	77	84	13.7500
mmma]ee	chr2:97877392-97877661(+)$1	269	212	219	13.5000
hhhhlll	chr14:70235897-70236135(+)$1	238	109	116	17.6666
:::::::	chr7:148700536-148700762(-)$1	226	192	199	17.6666
pppa]cc	chr1:990364-990588(+)$1	224	39	46	13.5000
mmmmddd	chr2:61413170-61413444(+)$1	274	113	120	13.4166
}EEEEE:	chr3:65455788-65456022(-)$1	234	183	190	17.6666
III::::	chr3:145788219-145788432(-)$1	213	20	27	13.7500
:::::::	chr4:166419269-166419496(+)$1	227	2	9	13.2500
eelllee	chr2:102796065-102796379(+)$1	314	77	84	17.6666
ffddddc	chr2:223783836-223784100(+)$1	264	252	259	14.0000
foooooo	chr16:81583573-81583823(+)$1	250	17	24	13.7500
=======	chr13:48835757-48836028(+)$1	271	35	42	14.3333
::hhhhh	chr1:97250717-97250979(+)$1	262	99	106	13.7500
:::::::	chr7:148523164-148523408(-)$1	244	1	8	13.5000
%%%%%%d	chr7:94298414-94298647(+)$1	233	92	99	14.3333
EE:::::	chr19:18390681-18390915(-)$1	234	152	159	17.6666
IIIII~~	chr2:232323548-232323798(-)$1	250	181	188	17.6666
iiiiii5	chr2:47387709-47387949(-)$1	240	95	102	13.5000
eeeemmm	chr22:38203255-38203487(+)$1	232	47	54	17.6666
!eeeee$	chr7:128409386-128409647(+)$1	261	198	205	14.3333
:::::::	chr14:31175011-31175276(+)$1	265	87	94	17.6666
JJJJ:bb	chr20:45976387-45976651(-)$1	264	187	194	13.2500
gggggqq	chr10:74789856-74790102(-)$1	246	101	108	13.5000
ee00000	chr11:57575685-57575958(+)$1	273	137	144	13.5000
cclllcc	chr13:113541234-113541530(+)$1	296	104	111	17.6666
::::::F	chr1:214161991-214162247(+)$1	256	17	24	13.2500
hhooooo	chr17:73163820-73164032(-)$1	212	18	25	14.3333
dddd[ff	chr18:9954462-9954751(+)$1	289	33	40	14.0000
iiii444	chr17:18111741-18112052(+)$1	311	265	272	14.3333
+++++++	chr15:43445997-43446331(+)$1	334	100	107	17.6666
:::::::	chr8:22879301-22879559(-)$1	258	83	90	13.2500
iiiiiii	chr2:20401828-20402103(-)$1	275	240	247	17.6666
CCC////	chr8:62593348-62593605(-)$1	257	220	227	14.3333
::::::f	chr8:17721914-17722195(-)$1	281	132	139	13.5000
:::::::	chrY:21756584-21756851(+)$1	267	259	266	17.6666
mmeeeee	chr4:166263992-166264218(+)$1	226	78	85	17.6666
:::::::	chr12:66357261-66357532(+)$1	271	80	87	14.3333
HHHHHZZ	chr7:128411252-128411501(+)$1	249	98	105	13.5000
ggggggg	chr6:75964661-75964968(-)$1	307	24	31	13.7500

#DB
(..((((	chr18:21119603-21119861(-)$1	1	59	66	13.7500
..(((((	chr3:127788576-127788809(+)$1	1	19	26	14.3333
.......	chr11:17153282-17153580(-)$1	1	45	52	17.6666
..)))).	chr15:44707721-44708004(+)$1	1	132	139	17.6666
)).....	chr17:57915492-57915720(+)$1	1	28	35	13.7500
(((((((	chr13:46627483-46627749(-)$1	1	77	84	17.6666
))...((	chr1:213037782-213038073(+)$1	1	85	92	17.6666
.......	chr3:57557459-57557710(-)$1	1	68	75	13.2500
.......	chr15:66587397-66587659(+)$1	1	190	197	14.3333
..)))))	chr20:4833077-4833324(-)$1	1	150	157	17.6666
.((((..	chr10:88863398-88863720(+)$1	1	256	263	14.3333
.....((	chr7:30054075-30054334(-)$1	1	36	43	13.4166
((...((	chr22:41368490-41368745(+)$1	1	109	116	13.0833
.....))	chr3:128338897-128339150(-)$1	1	89	96	17.6666
....)))	chr1:11083298-11083552(+)$1	1	100	107	13.7500
.......	chr17:60023178-60023443(-)$1	1	68	75	17.6666
((((((.	chr4:120219822-120220035(-)$1	1	16	23	13.7500
...((((	chr5:80365363-80365624(+)$1	1	217	224	14.3333
.......	chr3:149093056-149093314(-)$1	1	115	122	13.7500
....)))	chr2:36777953-36778224(+)$1	1	96	103	14.3333
(...(((	chr3:145807147-145807432(-)$1	1	77	84	13.7500
...).))	chr2:97877392-97877661(+)$1	1	212	219	13.5000
((((...	chr14:70235897-70236135(+)$1	1	109	116	17.6666
.......	chr7:148700536-148700762(-)$1	1	192	199	17.6666
...).))	chr1:990364-990588(+)$1	1	39	46	13.5000
....)))	chr2:61413170-61413444(+)$1	1	113	120	13.4166
.))))).	chr3:65455788-65456022(-)$1	1	183	190	17.6666
(((....	chr3:145788219-145788432(-)$1	1	20	27	13.7500
.......	chr4:166419269-166419496(+)$1	1	2	9	13.2500
((...))	chr2:102796065-102796379(+)$1	1	77	84	17.6666
)))))))	chr2:223783836-223784100(+)$1	1	252	259	14.0000
(......	chr16:81583573-81583823(+)$1	1	17	24	13.7500
(((((((	chr13:48835757-48836028(+)$1	1	35	42	14.3333
..(((((	chr1:97250717-97250979(+)$1	1	99	106	13.7500
.......	chr7:148523164-148523408(-)$1	1	1	8	13.5000
......(	chr7:94298414-94298647(+)$1	1	92	99	14.3333
)).....	chr19:18390681-18390915(-)$1	1	152	159	17.6666
)))))..	chr2:232323548-232323798(-)$1	1	181	188	17.6666
)))))).	chr2:47387709-47387949(-)$1	1	95	102	13.5000
((((...	chr22:38203255-38203487(+)$1	1	47	54	17.6666
.(((((.	chr7:128409386-128409647(+)$1	1	198	205	14.3333
.......	chr14:31175011-31175276(+)$1	1	87	94	17.6666
)))).((	chr20:45976387-45976651(-)$1	1	187	194	13.2500
(((((..	chr10:74789856-74790102(-)$1	1	101	108	13.5000
)).....	chr11:57575685-57575958(+)$1	1	137	144	13.5000
((...))	chr13:113541234-113541530(+)$1	1	104	111	17.6666
......(	chr1:214161991-214162247(+)$1	1	17	24	13.2500
((.....	chr17:73163820-73164032(-)$1	1	18	25	14.3333
((((.((	chr18:9954462-9954751(+)$1	1	33	40	14.0000
))))...	chr17:18111741-18112052(+)$1	1	265	272	14.3333
.......	chr15:43445997-43446331(+)$1	1	100	107	17.6666
.......	chr8:22879301-22879559(-)$1	1	83	90	13.2500
)))))))	chr2:20401828-20402103(-)$1	1	240	247	17.6666
)))....	chr8:62593348-62593605(-)$1	1	220	227	14.3333
......(	chr8:17721914-17722195(-)$1	1	132	139	13.5000
.......	chrY:21756584-21756851(+)$1	1	259	266	17.6666
..)))))	chr4:166263992-166264218(+)$1	1	78	85	17.6666
.......	chr12:66357261-66357532(+)$1	1	80	87	14.3333
)))))..	chr7:128411252-128411501(+)$1	1	98	105	13.5000
(((((((	chr6:75964661-75964968(-)$1	1	24	31	13.7500

#PSSM
U : 0.70	C : 0.09	A : 0.08	u : 0.06	G : 0.03	a : 0.01	
U : 0.78	A : 0.08	u : 0.08	G : 0.03	C : 0.01	
U : 0.91	u : 0.08	
U : 0.83	u : 0.06	G : 0.05	g : 0.01	C : 0.01	A : 0.01	
U : 0.91	u : 0.08	
A : 0.85	a : 0.08	G : 0.05	C : 0.01	
A : 0.78	U : 0.08	a : 0.08	C : 0.03	G : 0.01	

#score	905.0000000000005
#seq	60
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_transcript_m2_run2.nuc.txt

#NT
GUGGG	chr20:362260-362559(+)$1	299	10	15	15.0000
guggg	chr19:4062690-4062923(-)$1	233	13	18	15.0000
GUGGG	chr20:60934834-60935082(-)$1	248	4	9	15.0000
GUGGG	chr16:591049-591314(+)$1	265	104	109	15.0000
GUGGG	chr4:1371875-1372159(+)$1	284	98	103	15.0000
GUGGG	chr7:97913293-97913546(+)$1	253	130	135	15.0000
GUGGG	chr14:105339714-105339949(+)$1	235	48	53	15.0000
GUGGG	chr12:123754913-123755143(-)$1	230	211	216	15.0000
GUGGG	chr1:9242659-9242909(+)$1	250	65	70	15.0000
GUGGG	chr4:1237201-1237460(-)$1	259	61	66	15.0000
GUGGG	chr14:105922315-105922556(+)$1	241	28	33	15.0000
GUGGG	chr14:105249992-105250218(-)$1	226	82	87	15.0000
GUGGG	chr17:80193559-80193807(+)$1	248	102	107	15.0000
GUGGG	chr1:3465249-3465500(-)$1	251	48	53	15.0000
GUGGG	chr7:2683773-2684018(+)$1	245	3	8	15.0000
GUGGG	chr2:129040004-129040256(-)$1	252	10	15	15.0000
GUGGG	chr8:144675127-144675372(-)$1	245	155	160	15.0000
GUGGG	chr6:36646696-36646932(+)$1	236	33	38	15.0000
GUGGG	chr2:130795800-130796056(-)$1	256	41	46	15.0000
GUGGG	chr16:75282008-75282280(-)$1	272	137	142	15.0000
GUGGG	chr7:2676322-2676574(+)$1	252	96	101	15.0000
GUGGG	chr17:80188009-80188261(+)$1	252	7	12	15.0000
GUGGG	chr7:158379685-158379934(-)$1	249	21	26	15.0000
GUGGG	chr7:2676181-2676437(+)$1	256	114	119	15.0000
GUGGG	chr3:49045275-49045538(+)$1	263	221	226	15.0000
GUGGG	chr19:2447960-2448222(-)$1	262	167	172	15.0000
GUGGG	chr16:587603-587865(+)$1	262	168	173	15.0000
GUGGG	chr17:63556547-63556789(-)$1	242	200	205	15.0000
GUGGG	chr17:7476836-7477071(+)$1	235	91	96	15.0000
GUGGG	chr7:2679724-2679938(+)$1	214	80	85	15.0000
GUGGG	chr16:591343-591620(+)$1	277	40	45	15.0000
GUGGG	chr7:158238446-158238692(-)$1	246	205	210	15.0000
GUGGG	chr20:61273830-61274050(+)$1	220	157	162	15.0000
GUGGG	chr20:57267737-57268015(+)$1	278	203	208	15.0000
GUGGG	chr12:133113891-133114143(+)$1	252	28	33	15.0000
GUGGG	chr6:151187209-151187487(+)$1	278	54	59	15.0000
GUGGG	chr22:20120488-20120786(+)$1	298	18	23	15.0000
GUGGG	chr19:1410312-1410593(+)$1	281	13	18	15.0000
GUGGG	chr20:32252153-32252405(-)$1	252	76	81	15.0000
GUGGG	chr17:80192373-80192681(+)$1	308	128	133	15.0000
GUGGG	chr19:4059848-4060155(-)$1	307	110	115	15.0000
GUGGG	chr2:101436956-101437255(+)$1	299	90	95	15.0000
GUGGG	chr8:30669833-30670093(-)$1	260	30	35	15.0000
GUGGG	chr16:22338658-22338909(+)$1	251	134	139	15.0000
GUGGG	chr17:80187635-80187944(+)$1	309	31	36	15.0000
GUGGG	chr16:596652-596880(+)$1	228	105	110	15.0000
GUGGG	chr17:80187831-80188101(+)$1	270	113	118	15.0000
guggg	chr2:242753831-242754090(+)$1	259	41	46	15.0000
GUGGG	chr12:62996807-62997118(+)$1	311	122	127	15.0000
GUGGG	chr9:136799988-136800246(-)$1	258	83	88	15.0000
GUGGG	chr20:31048887-31049154(-)$1	267	105	110	15.0000
GUGGG	chr16:87877531-87877748(-)$1	217	11	16	15.0000
GUGGG	chr22:50870991-50871214(+)$1	223	51	56	15.0000
GUGGG	chr8:103666857-103667101(-)$1	244	61	66	15.0000
GUGGG	chr12:133370227-133370503(-)$1	276	152	157	15.0000
GUGGG	chr16:88555776-88556046(+)$1	270	110	115	15.0000
GUGGG	chr19:940816-941078(+)$1	262	103	108	15.0000
GUGGG	chr12:133370476-133370745(-)$1	269	36	41	15.0000
GUGGG	chr2:232574518-232574772(+)$1	254	191	196	15.0000
GUGGG	chr7:5459796-5460043(-)$1	247	219	224	15.0000
GUGGG	chr22:50742465-50742702(-)$1	237	35	40	15.0000
GUGGG	chr16:75272992-75273257(-)$1	265	49	54	15.0000
gUGGG	chr4:1873664-1873921(+)$1	257	84	89	15.0000

#otherMatches

#Struct PSSM
::ccc	chr19:658482-658730(-)$1	248	66	71	15.0000
EEEEE	chr20:362260-362559(+)$1	299	10	15	15.0000
FFF{A	chr19:4062690-4062923(-)$1	233	13	18	15.0000
GGGGG	chr20:60934834-60935082(-)$1	248	4	9	15.0000
mmccc	chr16:591049-591314(+)$1	265	104	109	15.0000
ccc$$	chr4:1371875-1372159(+)$1	284	98	103	15.0000
]====	chr7:97913293-97913546(+)$1	253	130	135	15.0000
mmccc	chr14:105339714-105339949(+)$1	235	48	53	15.0000
ffBB:	chr12:123754913-123755143(-)$1	230	211	216	15.0000
###a!	chr1:9242659-9242909(+)$1	250	65	70	15.0000
##ddd	chr4:1237201-1237460(-)$1	259	61	66	15.0000
mmmee	chr14:105922315-105922556(+)$1	241	28	33	15.0000
cc]cc	chr14:105249992-105250218(-)$1	226	82	87	15.0000
!dddd	chr17:80193559-80193807(+)$1	248	102	107	15.0000
ffff[	chr1:3465249-3465500(-)$1	251	48	53	15.0000
CCCKK	chr7:2683773-2684018(+)$1	245	3	8	15.0000
ggggg	chr2:129040004-129040256(-)$1	252	10	15	15.0000
d]ddd	chr8:144675127-144675372(-)$1	245	155	160	15.0000
hhhqq	chr6:36646696-36646932(+)$1	236	33	38	15.0000
[a[cc	chr2:130795800-130796056(-)$1	256	41	46	15.0000
gbbww	chr16:75282008-75282280(-)$1	272	137	142	15.0000
fffff	chr7:2676322-2676574(+)$1	252	96	101	15.0000
FFGGG	chr17:80188009-80188261(+)$1	252	7	12	15.0000
gg:::	chr7:158379685-158379934(-)$1	249	21	26	15.0000
wwwww	chr7:2676181-2676437(+)$1	256	114	119	15.0000
lffff	chr3:49045275-49045538(+)$1	263	221	226	15.0000
]gggg	chr19:2447960-2448222(-)$1	262	167	172	15.0000
eeeee	chr16:587603-587865(+)$1	262	168	173	15.0000
b[ddd	chr17:63556547-63556789(-)$1	242	200	205	15.0000
g[a[a	chr17:7476836-7477071(+)$1	235	91	96	15.0000
EEEEE	chr7:2679724-2679938(+)$1	214	80	85	15.0000
ccHHH	chr16:591343-591620(+)$1	277	40	45	15.0000
dddd:	chr7:158238446-158238692(-)$1	246	205	210	15.0000
eee[c	chr20:61273830-61274050(+)$1	220	157	162	15.0000
FFFFF	chr20:57267737-57268015(+)$1	278	203	208	15.0000
ggggg	chr12:133113891-133114143(+)$1	252	28	33	15.0000
]a]cc	chr6:151187209-151187487(+)$1	278	54	59	15.0000
dd22e	chr22:20120488-20120786(+)$1	298	18	23	15.0000
::ggg	chr19:1410312-1410593(+)$1	281	13	18	15.0000
:::CC	chr20:32252153-32252405(-)$1	252	76	81	15.0000
]ffff	chr17:80192373-80192681(+)$1	308	128	133	15.0000
dd[cc	chr19:4059848-4060155(-)$1	307	110	115	15.0000
obb]f	chr2:101436956-101437255(+)$1	299	90	95	15.0000
$$$$$	chr8:30669833-30670093(-)$1	260	30	35	15.0000
ggggp	chr16:22338658-22338909(+)$1	251	134	139	15.0000
ggggg	chr17:80187635-80187944(+)$1	309	31	36	15.0000
eeggg	chr16:596652-596880(+)$1	228	105	110	15.0000
[ammm	chr17:80187831-80188101(+)$1	270	113	118	15.0000
{EEEE	chr2:242753831-242754090(+)$1	259	41	46	15.0000
iiiii	chr12:62996807-62997118(+)$1	311	122	127	15.0000
IIIII	chr9:136799988-136800246(-)$1	258	83	88	15.0000
EE:hh	chr20:31048887-31049154(-)$1	267	105	110	15.0000
DDDDK	chr16:87877531-87877748(-)$1	217	11	16	15.0000
GGGGG	chr22:50870991-50871214(+)$1	223	51	56	15.0000
bb]dd	chr8:103666857-103667101(-)$1	244	61	66	15.0000
b[===	chr12:133370227-133370503(-)$1	276	152	157	15.0000
{DDDD	chr16:88555776-88556046(+)$1	270	110	115	15.0000
ff[ee	chr19:940816-941078(+)$1	262	103	108	15.0000
ldddd	chr12:133370476-133370745(-)$1	269	36	41	15.0000
:eeee	chr2:232574518-232574772(+)$1	254	191	196	15.0000
bbmmm	chr7:5459796-5460043(-)$1	247	219	224	15.0000
cc:hh	chr22:50742465-50742702(-)$1	237	35	40	15.0000
nnnff	chr16:75272992-75273257(-)$1	265	49	54	15.0000
444a]	chr4:1873664-1873921(+)$1	257	84	89	15.0000

#DB
..(((	chr19:658482-658730(-)$1	1	66	71	15.0000
(((((	chr20:362260-362559(+)$1	1	10	15	15.0000
(((.(	chr19:4062690-4062923(-)$1	1	13	18	15.0000
(((((	chr20:60934834-60935082(-)$1	1	4	9	15.0000
..)))	chr16:591049-591314(+)$1	1	104	109	15.0000
(((..	chr4:1371875-1372159(+)$1	1	98	103	15.0000
.))))	chr7:97913293-97913546(+)$1	1	130	135	15.0000
..)))	chr14:105339714-105339949(+)$1	1	48	53	15.0000
)))).	chr12:123754913-123755143(-)$1	1	211	216	15.0000
...(.	chr1:9242659-9242909(+)$1	1	65	70	15.0000
..(((	chr4:1237201-1237460(-)$1	1	61	66	15.0000
...))	chr14:105922315-105922556(+)$1	1	28	33	15.0000
)).))	chr14:105249992-105250218(-)$1	1	82	87	15.0000
.((((	chr17:80193559-80193807(+)$1	1	102	107	15.0000
((((.	chr1:3465249-3465500(-)$1	1	48	53	15.0000
(((..	chr7:2683773-2684018(+)$1	1	3	8	15.0000
(((((	chr2:129040004-129040256(-)$1	1	10	15	15.0000
).)))	chr8:144675127-144675372(-)$1	1	155	160	15.0000
(((..	chr6:36646696-36646932(+)$1	1	33	38	15.0000
.(.((	chr2:130795800-130796056(-)$1	1	41	46	15.0000
(((..	chr16:75282008-75282280(-)$1	1	137	142	15.0000
(((((	chr7:2676322-2676574(+)$1	1	96	101	15.0000
(((((	chr17:80188009-80188261(+)$1	1	7	12	15.0000
))...	chr7:158379685-158379934(-)$1	1	21	26	15.0000
.....	chr7:2676181-2676437(+)$1	1	114	119	15.0000
.))))	chr3:49045275-49045538(+)$1	1	221	226	15.0000
.))))	chr19:2447960-2448222(-)$1	1	167	172	15.0000
(((((	chr16:587603-587865(+)$1	1	168	173	15.0000
(.(((	chr17:63556547-63556789(-)$1	1	200	205	15.0000
(.(.(	chr17:7476836-7477071(+)$1	1	91	96	15.0000
(((((	chr7:2679724-2679938(+)$1	1	80	85	15.0000
))(((	chr16:591343-591620(+)$1	1	40	45	15.0000
)))).	chr7:158238446-158238692(-)$1	1	205	210	15.0000
(((.(	chr20:61273830-61274050(+)$1	1	157	162	15.0000
)))))	chr20:57267737-57268015(+)$1	1	203	208	15.0000
(((((	chr12:133113891-133114143(+)$1	1	28	33	15.0000
.).))	chr6:151187209-151187487(+)$1	1	54	59	15.0000
))..)	chr22:20120488-20120786(+)$1	1	18	23	15.0000
..(((	chr19:1410312-1410593(+)$1	1	13	18	15.0000
...((	chr20:32252153-32252405(-)$1	1	76	81	15.0000
.))))	chr17:80192373-80192681(+)$1	1	128	133	15.0000
((.((	chr19:4059848-4060155(-)$1	1	110	115	15.0000
.)).)	chr2:101436956-101437255(+)$1	1	90	95	15.0000
.....	chr8:30669833-30670093(-)$1	1	30	35	15.0000
((((.	chr16:22338658-22338909(+)$1	1	134	139	15.0000
)))))	chr17:80187635-80187944(+)$1	1	31	36	15.0000
))(((	chr16:596652-596880(+)$1	1	105	110	15.0000
.(...	chr17:80187831-80188101(+)$1	1	113	118	15.0000
.((((	chr2:242753831-242754090(+)$1	1	41	46	15.0000
(((((	chr12:62996807-62997118(+)$1	1	122	127	15.0000
(((((	chr9:136799988-136800246(-)$1	1	83	88	15.0000
((.((	chr20:31048887-31049154(-)$1	1	105	110	15.0000
((((.	chr16:87877531-87877748(-)$1	1	11	16	15.0000
(((((	chr22:50870991-50871214(+)$1	1	51	56	15.0000
)).))	chr8:103666857-103667101(-)$1	1	61	66	15.0000
(.(((	chr12:133370227-133370503(-)$1	1	152	157	15.0000
.((((	chr16:88555776-88556046(+)$1	1	110	115	15.0000
((.((	chr19:940816-941078(+)$1	1	103	108	15.0000
.))))	chr12:133370476-133370745(-)$1	1	36	41	15.0000
.((((	chr2:232574518-232574772(+)$1	1	191	196	15.0000
((...	chr7:5459796-5460043(-)$1	1	219	224	15.0000
)).((	chr22:50742465-50742702(-)$1	1	35	40	15.0000
...))	chr16:75272992-75273257(-)$1	1	49	54	15.0000
...).	chr4:1873664-1873921(+)$1	1	84	89	15.0000

#PSSM
G : 0.95	g : 0.04	
U : 0.96	u : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	960.0
#seq	64
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_UTR_m2_run2.nuc.txt

#NT
GCCCCCGCGGUCGCAGGGGCAACGAGCCCGGCCGGCCCUCGCGAGCGGAGGCGGGGCCGGGGCCGGAAGUCACGUGCUGUGACAGUAGCUGGGGUGAGGCCGUCGUCGCCGCACGGGCUGGUUGGGGCUGUGUCUGUGGGAGGCGCCGGGGUGAUGGCGGUGGAGACUCUGUCCCCGGACUGGGAGUUUGACCGCGUUGACGACGGCUCGCAGAGUAAGGGAGCUGCAGGGCGAGGGCUGCGGGUGGACGCUCCUUCGGCCCGCCGCUGUUCUGGGCUGGGCAGCGCUCCUGCGAGAGGGACGGCUGCGCAGCC	chr12:105501413-105501746(+)$1	333	12	326	434.5000

#otherMatches

#Struct PSSM
mmmmdddd]ccc:HHHHHHHH{JJJJJJJJJJ{CCCKKCCCKKFFFFFFFFFFFFgggggggqqqqqqqqggggggg::::::bb!!ffffff[dddd"""a[ccclllccc]adddd]ffffff]bbFFFFFF?????FFFFFFZZZCCCYYCCC}JJJJJJJJJJHHHHHHHHbb[cccooooooccc]bbDDDDKKA{CCC{DDDD{BB{DDDD:::::hhhhhhhhnnnnnhhhhhhhhffffff[ggggggg"""eeeeeooooooeeeee333ggggggg]ffffff:::::::::DDDD}BBDDDD}	chr5:149829029-149829360(-)$1	331	8	322	434.5000
CCCGGGGGGG{EEEEELLLDDDD{FFFFFF:hhhhhhhh[bb!!bbmmmmbb333bb]hhhhhhhh::eeeeennnnneeeee::::::bb[eeeee[ammmma]eeeee]bbFFFFFF}DDDDZZZEEEEE}GGGGGGG}CCC}BBCCCbb[a!!eeeee!!gggggggcccmmmmccc22ggggggg]eeeee22a]bb::ffffff[apppppppa]ffffffffffff"""ccc[ffffff[bbpppppppbb]ffffff]cccffffffeeeee[eeeee!!ddddoooooodddd22eeeee]eeeee	chr12:105501413-105501746(+)$1	333	12	326	434.5000

#DB
....)))).))).((((((((.((((((((((.(((..(((..(((((((((((((((((((........)))))))......((..((((((.((((...(.(((...))).))))).)))))).)))))))).....))))))...)))..))).))))))))))))))))))((.(((......))).))((((..(.(((.((((.((.((((.....((((((((.....))))))))((((((.(((((((...(((((......)))))...))))))).)))))).........)))).)))))).	chr5:149829029-149829360(-)$1	1	8	322	434.5000
((((((((((.(((((...((((.((((((.((((((((.((..((....))...)).))))))))..(((((.....)))))......((.(((((.(....).))))).)))))))).))))...))))).))))))).))).)))))((.(..(((((..((((((((((....)))..))))))).)))))..).))..((((((.(.......).))))))((((((...(((.((((((.((.......)).)))))).)))))))))(((((.(((((..((((......))))..))))).)))))	chr12:105501413-105501746(+)$1	1	12	326	434.5000

#PSSM
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	

#score	869.0
#seq	2
#width	314
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_UTR_m3_run2.nuc.txt

#NT
ccacagccccc	chr19:14203501-14203721(-)$1	220	44	55	20.4193
CCCCCGCCCCG	chr17:7308297-7308590(+)$1	293	67	78	18.3225
UCCCAGUCCCC	chr12:53856172-53856422(+)$1	250	98	109	16.2258
CCCCAGGCUCC	chr8:144357451-144357737(+)$1	286	261	272	16.7903
ccccagccuuc	chr4:77996929-77997143(-)$1	214	7	18	17.9193
cuccagcccca	chr19:45323656-45324017(+)$1	361	1	12	18.2419
CUCCAGCCCUC	chr11:2160150-2160352(-)$1	202	68	79	18.0806
ucccagcccca	chr9:35829534-35829885(+)$1	351	117	128	17.5161
CCCCAGCUCCC	chr6:41567000-41567241(+)$1	241	169	180	19.7741
CUCCAGCCACC	chr17:36891420-36891662(-)$1	242	26	37	17.1935
ccccggccccc	chr11:2159992-2160200(-)$1	208	182	193	21.3064
CCCCAGCCCAG	chr11:66011716-66011999(+)$1	283	213	224	18.0806
CCCCAGCCUGC	chr5:175954475-175954707(-)$1	232	112	123	17.5161
cccccgccccc	chr3:47459201-47459466(-)$1	265	88	99	21.2258
CCCCAUCCCCG	chr11:2160250-2160477(-)$1	227	102	113	17.5967
CCCCAACCACC	chr6:41566871-41567150(+)$1	279	80	91	16.3064
CUCCAGCCCUC	chr1:27633973-27634211(+)$1	238	66	77	18.0806
ccccugccucc	chr1:20812197-20812495(-)$1	298	17	28	17.5161
CCCUUGCCCCC	chr3:47451639-47451859(+)$1	220	16	27	16.8709
CUCCAGCCCUC	chr11:2160136-2160342(-)$1	206	58	69	18.0806
CCGCAGCCCCC	chr16:24942399-24942655(-)$1	256	181	192	20.2580
ccucagccacc	chr1:224621495-224621752(-)$1	257	207	218	16.4677
ccccggccccc	chr11:2159798-2160041(-)$1	243	23	34	21.3064
CUCCAGCCCUC	chr11:2160091-2160302(-)$1	211	18	29	18.0806
CCCCAGCCCCU	chr11:66010917-66011193(+)$1	276	234	245	21.5483
CCACAGCCUcc	chr9:132900650-132901026(+)$1	376	24	35	16.7903
ccccggccccc	chr11:2159905-2160126(-)$1	221	108	119	21.3064
CUCCAGGCCCC	chr4:668440-668700(+)$1	260	227	238	16.9516
CCCCAGCCCUU	chr19:6441456-6441786(-)$1	330	127	138	18.4838
CCCCAGCCCGA	chr11:2159626-2159832(-)$1	206	154	165	18.2419
CCCCAGCCUUC	chr1:26607627-26607988(+)$1	361	34	45	17.9193
CCCCAGCCCGA	chr11:2159639-2159842(-)$1	203	164	175	18.2419
CCCCAUCCCCG	chr11:2160185-2160393(-)$1	208	18	29	17.5967
CCCCAGCCCCG	chr16:28834306-28834591(+)$1	285	212	223	21.7096
ACCCACCCCCC	chr12:7024632-7024878(+)$1	246	225	236	16.2258
CCCCAGCCCCA	chr21:47738515-47738794(-)$1	279	83	94	21.7096
ccccagcccca	chr3:47452030-47452271(+)$1	241	114	125	21.7096
CCCUGGCCCCC	chr19:42734398-42734649(-)$1	251	59	70	17.0322
CCCCAGCCCCC	chr7:1028437-1028664(+)$1	227	27	38	24.6129
ccccauccucc	chr19:45323340-45323577(+)$1	237	77	88	16.8709
acccugccccc	chr19:45323159-45323412(+)$1	253	172	183	17.0322
cccucgccccc	chr20:3776985-3777321(+)$1	336	5	16	16.9516
cuccugccccc	chr19:45324485-45324724(+)$1	239	107	118	17.6774
ccccagaccca	chr19:35532938-35533229(+)$1	291	39	50	17.3548
CCCGAGCCCGC	chr10:43892003-43892272(-)$1	269	28	39	16.8709
CCUCCGCCCCC	chr21:48055720-48056090(+)$1	370	58	69	17.0322
cccccggcccc	chr11:381502-381810(+)$1	308	25	36	17.0322
ucccagcccuc	chr2:172016835-172017095(-)$1	260	36	47	17.3548
CGCCAGCCCCU	chr20:62695043-62695324(+)$1	281	104	115	17.4354
CCCCAGCCCCC	chr7:1028420-1028637(+)$1	217	44	55	24.6129
CCACAGCCCCC	chr7:100075517-100075784(-)$1	267	219	230	20.4193
ccccggccccc	chr11:2160000-2160215(-)$1	215	197	208	21.3064
CCUCAGCCCCC	chr16:28914903-28915222(+)$1	319	37	48	20.4193
CCCGAGCCCUC	chr1:38462701-38462980(-)$1	279	206	217	17.2741
ccccggccccc	chr11:2160414-2160626(-)$1	212	44	55	21.3064
ACCCAGCCCCU	chr1:22149075-22149329(-)$1	254	76	87	17.4354
CUCCAGCCCCU	chr17:40947043-40947317(+)$1	274	253	264	18.0806
CCCGAGCCCCG	chr3:47458973-47459237(-)$1	264	150	161	17.4354
CCCCACCCCAC	chr10:43892125-43892451(-)$1	326	19	30	16.7096
CCCCAUCCCCG	chr11:2160289-2160492(-)$1	203	117	128	17.5967
ACCCAGUCCCC	chr12:132569344-132569640(+)$1	296	114	125	16.3064

#otherMatches

#Struct PSSM
GMMMMDDDD{B	chr16:29910536-29910832(-)$1	296	117	128	20.4193
:::::::::::	chr19:14203501-14203721(-)$1	220	44	55	20.4193
{EEEEE{JJJJ	chr17:7308297-7308590(+)$1	293	67	78	18.3225
ppppddddccc	chr12:53856172-53856422(+)$1	250	98	109	16.2258
ooddddeeeee	chr8:144357451-144357737(+)$1	286	261	272	16.7903
:::::CCCOOO	chr4:77996929-77997143(-)$1	214	7	18	17.9193
:::::cccsss	chr19:45323656-45324017(+)$1	361	1	12	18.2419
KKA{GGGGGGG	chr11:2160150-2160352(-)$1	202	68	79	18.0806
$$$$ccc!!dd	chr9:35829534-35829885(+)$1	351	117	128	17.5161
?????CCC///	chr6:41567000-41567241(+)$1	241	169	180	19.7741
5555eeeee::	chr17:36891420-36891662(-)$1	242	26	37	17.1935
DDD}DDDD:::	chr11:2159992-2160200(-)$1	208	182	193	21.3064
\\\\\\\\\DD	chr11:66011716-66011999(+)$1	283	213	224	18.0806
fffffqqqqqq	chr5:175954475-175954707(-)$1	232	112	123	17.5161
c$$$$$ccc[e	chr3:47459201-47459466(-)$1	265	88	99	21.2258
^^^^^^^^^^^	chr11:2160250-2160477(-)$1	227	102	113	17.5967
yyyyyyyyyyy	chr6:41566871-41567150(+)$1	279	80	91	16.3064
dd[ddddoooo	chr1:27633973-27634211(+)$1	238	66	77	18.0806
LFFFFFF::::	chr1:20812197-20812495(-)$1	298	17	28	17.5161
DJJJJJJJJJJ	chr3:47451639-47451859(+)$1	220	16	27	16.8709
::::GGGGGGG	chr11:2160136-2160342(-)$1	206	58	69	18.0806
bmmmmbb::::	chr16:24942399-24942655(-)$1	256	181	192	20.2580
vvvvvvvvvvv	chr1:224621495-224621752(-)$1	257	207	218	16.4677
CLLLCCCLLLC	chr11:2159798-2160041(-)$1	243	23	34	21.3064
CKKAGGGGGGG	chr11:2160091-2160302(-)$1	211	18	29	18.0806
ccc!!bbpppp	chr11:66010917-66011193(+)$1	276	234	245	21.5483
qqeeeee::::	chr9:132900650-132901026(+)$1	376	24	35	16.7903
CLLLCCC::::	chr11:2159905-2160126(-)$1	221	108	119	21.3064
dmmmmdddd44	chr4:668440-668700(+)$1	260	227	238	16.9516
yyyyyyyyyye	chr19:6441456-6441786(-)$1	330	127	138	18.4838
oodddd:::BB	chr11:2159626-2159832(-)$1	206	154	165	18.2419
::::::fffff	chr1:26607627-26607988(+)$1	361	34	45	17.9193
oodddd:::BB	chr11:2159639-2159842(-)$1	203	164	175	18.2419
:::::::::::	chr11:2160185-2160393(-)$1	208	18	29	17.5967
ffqqqqqqqqf	chr16:28834306-28834591(+)$1	285	212	223	21.7096
||||||FFFFF	chr12:7024632-7024878(+)$1	246	225	236	16.2258
LLLDDDDNNNN	chr21:47738515-47738794(-)$1	279	83	94	21.7096
dssssssssss	chr3:47452030-47452271(+)$1	241	114	125	21.7096
JJJJJJJJJBB	chr19:42734398-42734649(-)$1	251	59	70	17.0322
nnnnccc]bb]	chr7:1028437-1028664(+)$1	227	27	38	24.6129
^^^^^^^^^^^	chr19:45323340-45323577(+)$1	237	77	88	16.8709
:::::::::::	chr19:45323159-45323412(+)$1	253	172	183	17.0322
nnnndddd:::	chr20:3776985-3777321(+)$1	336	5	16	16.9516
cc]ddddDDDD	chr19:45324485-45324724(+)$1	239	107	118	17.6774
uuuuuccc::E	chr19:35532938-35533229(+)$1	291	39	50	17.3548
gggg[eeeee[	chr10:43892003-43892272(-)$1	269	28	39	16.8709
NNNNNBBPPPP	chr21:48055720-48056090(+)$1	370	58	69	17.0322
HHHHHHBBLLL	chr11:381502-381810(+)$1	308	25	36	17.0322
::::cccmmmm	chr2:172016835-172017095(-)$1	260	36	47	17.3548
]bb::dddd""	chr20:62695043-62695324(+)$1	281	104	115	17.4354
nnnnccc]bb]	chr7:1028420-1028637(+)$1	217	44	55	24.6129
dd333bb]ddd	chr7:100075517-100075784(-)$1	267	219	230	20.4193
DDD}DDDD:::	chr11:2160000-2160215(-)$1	215	197	208	21.3064
bb22bb88888	chr16:28914903-28915222(+)$1	319	37	48	20.4193
pppggggggg8	chr1:38462701-38462980(-)$1	279	206	217	17.2741
"""eeeeesss	chr11:2160414-2160626(-)$1	212	44	55	21.3064
:::::eeeee[	chr1:22149075-22149329(-)$1	254	76	87	17.4354
:::::::::::	chr17:40947043-40947317(+)$1	274	253	264	18.0806
bb"""bbdddd	chr3:47458973-47459237(-)$1	264	150	161	17.4354
eee''''''''	chr10:43892125-43892451(-)$1	326	19	30	16.7096
^^^^^^^^^^^	chr11:2160289-2160492(-)$1	203	117	128	17.5967
::ddddmmmmd	chr12:132569344-132569640(+)$1	296	114	125	16.3064

#DB
(....((((.(	chr16:29910536-29910832(-)$1	1	117	128	20.4193
...........	chr19:14203501-14203721(-)$1	1	44	55	20.4193
.(((((.((((	chr17:7308297-7308590(+)$1	1	67	78	18.3225
....))))(((	chr12:53856172-53856422(+)$1	1	98	109	16.2258
..)))))))))	chr8:144357451-144357737(+)$1	1	261	272	16.7903
.....(((...	chr4:77996929-77997143(-)$1	1	7	18	17.9193
.....(((...	chr19:45323656-45324017(+)$1	1	1	12	18.2419
..(.(((((((	chr11:2160150-2160352(-)$1	1	68	79	18.0806
....(((..((	chr9:35829534-35829885(+)$1	1	117	128	17.5161
.....)))...	chr6:41567000-41567241(+)$1	1	169	180	19.7741
....)))))..	chr17:36891420-36891662(-)$1	1	26	37	17.1935
))).))))...	chr11:2159992-2160200(-)$1	1	182	193	21.3064
.........))	chr11:66011716-66011999(+)$1	1	213	224	18.0806
(((((......	chr5:175954475-175954707(-)$1	1	112	123	17.5161
(.....(((.(	chr3:47459201-47459466(-)$1	1	88	99	21.2258
...........	chr11:2160250-2160477(-)$1	1	102	113	17.5967
...........	chr6:41566871-41567150(+)$1	1	80	91	16.3064
((.((((....	chr1:27633973-27634211(+)$1	1	66	77	18.0806
.((((((....	chr1:20812197-20812495(-)$1	1	17	28	17.5161
(((((((((((	chr3:47451639-47451859(+)$1	1	16	27	16.8709
....(((((((	chr11:2160136-2160342(-)$1	1	58	69	18.0806
(....))....	chr16:24942399-24942655(-)$1	1	181	192	20.2580
...........	chr1:224621495-224621752(-)$1	1	207	218	16.4677
(...(((...(	chr11:2159798-2160041(-)$1	1	23	34	21.3064
(..((((((((	chr11:2160091-2160302(-)$1	1	18	29	18.0806
(((..((....	chr11:66010917-66011193(+)$1	1	234	245	21.5483
..)))))....	chr9:132900650-132901026(+)$1	1	24	35	16.7903
(...(((....	chr11:2159905-2160126(-)$1	1	108	119	21.3064
(....))))..	chr4:668440-668700(+)$1	1	227	238	16.9516
..........)	chr19:6441456-6441786(-)$1	1	127	138	18.4838
..))))...))	chr11:2159626-2159832(-)$1	1	154	165	18.2419
......(((((	chr1:26607627-26607988(+)$1	1	34	45	17.9193
..))))...))	chr11:2159639-2159842(-)$1	1	164	175	18.2419
...........	chr11:2160185-2160393(-)$1	1	18	29	17.5967
((........)	chr16:28834306-28834591(+)$1	1	212	223	21.7096
......)))))	chr12:7024632-7024878(+)$1	1	225	236	16.2258
...((((....	chr21:47738515-47738794(-)$1	1	83	94	21.7096
(..........	chr3:47452030-47452271(+)$1	1	114	125	21.7096
(((((((((((	chr19:42734398-42734649(-)$1	1	59	70	17.0322
....))).)).	chr7:1028437-1028664(+)$1	1	27	38	24.6129
...........	chr19:45323340-45323577(+)$1	1	77	88	16.8709
...........	chr19:45323159-45323412(+)$1	1	172	183	17.0322
....))))...	chr20:3776985-3777321(+)$1	1	5	16	16.9516
)).))))((((	chr19:45324485-45324724(+)$1	1	107	118	17.6774
.....)))..(	chr19:35532938-35533229(+)$1	1	39	50	17.3548
((((.(((((.	chr10:43892003-43892272(-)$1	1	28	39	16.8709
.....((....	chr21:48055720-48056090(+)$1	1	58	69	17.0322
((((((((...	chr11:381502-381810(+)$1	1	25	36	17.0322
....(((....	chr2:172016835-172017095(-)$1	1	36	47	17.3548
.))..((((..	chr20:62695043-62695324(+)$1	1	104	115	17.4354
....))).)).	chr7:1028420-1028637(+)$1	1	44	55	24.6129
))...)).)))	chr7:100075517-100075784(-)$1	1	219	230	20.4193
))).))))...	chr11:2160000-2160215(-)$1	1	197	208	21.3064
))..)).....	chr16:28914903-28915222(+)$1	1	37	48	20.4193
...))))))).	chr1:38462701-38462980(-)$1	1	206	217	17.2741
...(((((...	chr11:2160414-2160626(-)$1	1	44	55	21.3064
.....(((((.	chr1:22149075-22149329(-)$1	1	76	87	17.4354
...........	chr17:40947043-40947317(+)$1	1	253	264	18.0806
((...((((((	chr3:47458973-47459237(-)$1	1	150	161	17.4354
(((........	chr10:43892125-43892451(-)$1	1	19	30	16.7096
...........	chr11:2160289-2160492(-)$1	1	117	128	17.5967
..((((....)	chr12:132569344-132569640(+)$1	1	114	125	16.3064

#PSSM
C : 0.61	c : 0.27	A : 0.04	u : 0.03	U : 0.01	a : 0.01	
C : 0.54	c : 0.29	U : 0.11	u : 0.03	G : 0.01	
C : 0.59	c : 0.29	A : 0.03	U : 0.03	a : 0.01	G : 0.01	u : 0.01	
C : 0.59	c : 0.30	G : 0.04	U : 0.03	u : 0.01	
A : 0.61	a : 0.14	g : 0.08	c : 0.04	u : 0.04	C : 0.03	U : 0.01	G : 0.01	
G : 0.58	g : 0.30	U : 0.04	C : 0.03	A : 0.01	u : 0.01	
C : 0.59	c : 0.29	U : 0.04	G : 0.03	a : 0.01	g : 0.01	
C : 0.66	c : 0.32	U : 0.01	
C : 0.58	c : 0.25	U : 0.06	u : 0.04	A : 0.03	a : 0.01	
C : 0.45	c : 0.30	U : 0.11	G : 0.06	u : 0.03	A : 0.03	
C : 0.41	c : 0.27	G : 0.11	U : 0.08	a : 0.06	A : 0.04	

#score	1150.1935483870955
#seq	62
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_CDS_m3_run1.nuc.txt

#NT
ggc	chr9:116823729-116823969(-)$1	240	20	23	9.0000
GGC	chr16:2817808-2818086(+)$1	278	14	17	9.0000
GGC	chr14:95053795-95054060(+)$1	265	23	26	9.0000
GGC	chr14:94849433-94849677(-)$1	244	11	14	9.0000
GGC	chr12:49434841-49435115(-)$1	274	0	3	9.0000
GGC	chr17:80043532-80043834(-)$1	302	6	9	9.0000
GGC	chr12:54058893-54059204(-)$1	311	35	38	9.0000
GGC	chr15:69747492-69747717(+)$1	225	15	18	9.0000
GGC	chr20:34213979-34214277(-)$1	298	42	45	9.0000
GGC	chr4:166300245-166300537(+)$1	292	4	7	9.0000
ggc	chr6:34212675-34212951(+)$1	276	79	82	9.0000
GGC	chr11:116706394-116706638(-)$1	244	0	3	9.0000
GGC	chr17:17723517-17723808(-)$1	291	14	17	9.0000
GGC	chr19:36640813-36641108(+)$1	295	29	32	9.0000
GGC	chr16:30734886-30735195(+)$1	309	84	87	9.0000
GGC	chr3:186338401-186338654(+)$1	253	63	66	9.0000
GGC	chr1:230841796-230842034(-)$1	238	8	11	9.0000
GGC	chr5:138941159-138941480(+)$1	321	3	6	9.0000
GGC	chr19:6719243-6719514(-)$1	271	3	6	9.0000
GGC	chr6:119670038-119670428(-)$1	390	42	45	9.0000
GGC	chr11:2154237-2154523(-)$1	286	4	7	9.0000
ggc	chr2:55276881-55277172(-)$1	291	20	23	9.0000
GGC	chr1:8922876-8923102(-)$1	226	79	82	9.0000
GGC	chrX:47074213-47074561(+)$1	348	19	22	9.0000
GGC	chr20:2442226-2442551(-)$1	325	12	15	9.0000
GGC	chr17:76967606-76967878(-)$1	272	45	48	9.0000
GGC	chr7:5428607-5428868(-)$1	261	5	8	9.0000
GGC	chr6:138752507-138752768(-)$1	261	29	32	9.0000
GGC	chr12:56506560-56506899(+)$1	339	45	48	9.0000
GGC	chr11:2154651-2154876(-)$1	225	16	19	9.0000
GGC	chr12:9254025-9254282(-)$1	257	42	45	9.0000
GGC	chr6:42897241-42897501(+)$1	260	53	56	9.0000
GGC	chr17:41610466-41610725(-)$1	259	93	96	9.0000
GGC	chr22:42301397-42301659(+)$1	262	61	64	9.0000
GGC	chr17:79826391-79826629(-)$1	238	13	16	9.0000
GGC	chr16:50667286-50667572(+)$1	286	1	4	9.0000
GGC	chr11:2154715-2154921(-)$1	206	25	28	9.0000
GGC	chr7:45928317-45928592(+)$1	275	6	9	9.0000
GGC	chr19:2227777-2228083(+)$1	306	14	17	9.0000
ggc	chr11:64089054-64089330(+)$1	276	25	28	9.0000
GGC	chr17:1648567-1648789(+)$1	222	1	4	9.0000
GGC	chr15:90328375-90328699(-)$1	324	0	3	9.0000
GGC	chr19:45323912-45324165(+)$1	253	48	51	9.0000
GGC	chr17:66526481-66526752(+)$1	271	40	43	9.0000
GGC	chr17:76968530-76968793(-)$1	263	67	70	9.0000
GGC	chr8:145065544-145065844(+)$1	300	24	27	9.0000
GGC	chr19:49469804-49470046(+)$1	242	120	123	9.0000
GGC	chr11:116707960-116708187(-)$1	227	11	14	9.0000
GGC	chr11:2156508-2156767(-)$1	259	61	64	9.0000
GGC	chr11:319633-319960(-)$1	327	5	8	9.0000
GGC	chr12:125262891-125263169(-)$1	278	0	3	9.0000
GGC	chr8:11705473-11705704(-)$1	231	29	32	9.0000
GGC	chr5:176523537-176523777(+)$1	240	30	33	9.0000
GGC	chr17:1553944-1554203(-)$1	259	28	31	9.0000
GGC	chr17:73842630-73842936(-)$1	306	121	124	9.0000
GGC	chr1:6508836-6509098(+)$1	262	5	8	9.0000
GGC	chr7:73011738-73012029(-)$1	291	4	7	9.0000
ggc	chr16:29818395-29818640(+)$1	245	1	4	9.0000
GGC	chr19:54969628-54969935(+)$1	307	7	10	9.0000
GGC	chr5:140953454-140953719(-)$1	265	3	6	9.0000
GGC	chr2:220435639-220435954(-)$1	315	5	8	9.0000
GGC	chr5:140953327-140953631(-)$1	304	198	201	9.0000
GGC	chr17:46136078-46136339(+)$1	261	0	3	9.0000
GGC	chr9:124064137-124064450(+)$1	313	80	83	9.0000
GGC	chr17:7416315-7416592(+)$1	277	8	11	9.0000
GGC	chr15:69747422-69747689(+)$1	267	22	25	9.0000
GGC	chr11:2154324-2154548(-)$1	224	15	18	9.0000
GGC	chr1:230841606-230841898(-)$1	292	38	41	9.0000
GGC	chr17:26694288-26694548(-)$1	260	2	5	9.0000
GGC	chr11:63765089-63765381(+)$1	292	120	123	9.0000
GGC	chr3:48461483-48461773(-)$1	290	73	76	9.0000
GGC	chr2:220432810-220433080(-)$1	270	55	58	9.0000
GGC	chr17:1648900-1649116(+)$1	216	2	5	9.0000
GGC	chr1:230846369-230846700(-)$1	331	45	48	9.0000
GGC	chr7:73011659-73011938(-)$1	279	39	42	9.0000
GGC	chr7:5568138-5568417(-)$1	279	10	13	9.0000
GGC	chr19:6677781-6678029(-)$1	248	36	39	9.0000
GGC	chr17:1649020-1649290(+)$1	270	57	60	9.0000
GGC	chr17:80049381-80049600(-)$1	219	8	11	9.0000
GGC	chr17:79915584-79915863(-)$1	279	44	47	9.0000
GGC	chr1:230839894-230840136(-)$1	242	16	19	9.0000
GGC	chrX:70443662-70443906(+)$1	244	8	11	9.0000
GGC	chr1:161192054-161192290(-)$1	236	26	29	9.0000
GGC	chr6:34212917-34213193(+)$1	276	21	24	9.0000
GGC	chr11:72425137-72425431(-)$1	294	1	4	9.0000
ggc	chr1:11986188-11986449(-)$1	261	12	15	9.0000
GGC	chr3:33155409-33155716(+)$1	307	2	5	9.0000
GGC	chr14:101200405-101200669(+)$1	264	49	52	9.0000
GGC	chr11:2156568-2156801(-)$1	233	0	3	9.0000
GGC	chr19:1397184-1397467(-)$1	283	34	37	9.0000
GGC	chr14:101200381-101200605(+)$1	224	12	15	9.0000
GGC	chr3:186336224-186336434(+)$1	210	20	23	9.0000
GGC	chr21:46910648-46910875(+)$1	227	46	49	9.0000
GGC	chr19:45412104-45412359(+)$1	255	7	10	9.0000
GGC	chrX:152966210-152966504(-)$1	294	6	9	9.0000
GGC	chr9:124062097-124062360(+)$1	263	1	4	9.0000
GGC	chr12:125270814-125271068(-)$1	254	24	27	9.0000

#otherMatches

#Struct PSSM
BBK	chr17:80046277-80046509(-)$1	232	7	10	9.0000
cc[	chr9:116823729-116823969(-)$1	240	20	23	9.0000
FFF	chr16:2817808-2818086(+)$1	278	14	17	9.0000
eee	chr14:95053795-95054060(+)$1	265	23	26	9.0000
fff	chr14:94849433-94849677(-)$1	244	11	14	9.0000
fff	chr12:49434841-49435115(-)$1	274	0	3	9.0000
d""	chr17:80043532-80043834(-)$1	302	6	9	9.0000
ddd	chr12:54058893-54059204(-)$1	311	35	38	9.0000
eeb	chr15:69747492-69747717(+)$1	225	15	18	9.0000
ddd	chr20:34213979-34214277(-)$1	298	42	45	9.0000
ggg	chr4:166300245-166300537(+)$1	292	4	7	9.0000
EE:	chr6:34212675-34212951(+)$1	276	79	82	9.0000
bbb	chr11:116706394-116706638(-)$1	244	0	3	9.0000
:::	chr17:17723517-17723808(-)$1	291	14	17	9.0000
JJJ	chr19:36640813-36641108(+)$1	295	29	32	9.0000
cc:	chr16:30734886-30735195(+)$1	309	84	87	9.0000
CCC	chr3:186338401-186338654(+)$1	253	63	66	9.0000
DDD	chr1:230841796-230842034(-)$1	238	8	11	9.0000
eee	chr5:138941159-138941480(+)$1	321	3	6	9.0000
CCC	chr19:6719243-6719514(-)$1	271	3	6	9.0000
ccc	chr6:119670038-119670428(-)$1	390	42	45	9.0000
DD{	chr11:2154237-2154523(-)$1	286	4	7	9.0000
EEE	chr2:55276881-55277172(-)$1	291	20	23	9.0000
ccc	chr1:8922876-8923102(-)$1	226	79	82	9.0000
EEE	chrX:47074213-47074561(+)$1	348	19	22	9.0000
DD:	chr20:2442226-2442551(-)$1	325	12	15	9.0000
fff	chr17:76967606-76967878(-)$1	272	45	48	9.0000
DDD	chr7:5428607-5428868(-)$1	261	5	8	9.0000
EEE	chr6:138752507-138752768(-)$1	261	29	32	9.0000
((b	chr12:56506560-56506899(+)$1	339	45	48	9.0000
bbc	chr11:2154651-2154876(-)$1	225	16	19	9.0000
EEE	chr12:9254025-9254282(-)$1	257	42	45	9.0000
fff	chr6:42897241-42897501(+)$1	260	53	56	9.0000
ddd	chr17:41610466-41610725(-)$1	259	93	96	9.0000
eee	chr22:42301397-42301659(+)$1	262	61	64	9.0000
GGG	chr17:79826391-79826629(-)$1	238	13	16	9.0000
:BB	chr16:50667286-50667572(+)$1	286	1	4	9.0000
FF:	chr11:2154715-2154921(-)$1	206	25	28	9.0000
III	chr7:45928317-45928592(+)$1	275	6	9	9.0000
BB{	chr19:2227777-2228083(+)$1	306	14	17	9.0000
ddd	chr11:64089054-64089330(+)$1	276	25	28	9.0000
:::	chr17:1648567-1648789(+)$1	222	1	4	9.0000
DDD	chr15:90328375-90328699(-)$1	324	0	3	9.0000
bbl	chr19:45323912-45324165(+)$1	253	48	51	9.0000
ccc	chr17:66526481-66526752(+)$1	271	40	43	9.0000
hhh	chr17:76968530-76968793(-)$1	263	67	70	9.0000
CC:	chr8:145065544-145065844(+)$1	300	24	27	9.0000
:BB	chr19:49469804-49470046(+)$1	242	120	123	9.0000
eee	chr11:116707960-116708187(-)$1	227	11	14	9.0000
dd]	chr11:2156508-2156767(-)$1	259	61	64	9.0000
FFF	chr11:319633-319960(-)$1	327	5	8	9.0000
BB{	chr12:125262891-125263169(-)$1	278	0	3	9.0000
===	chr8:11705473-11705704(-)$1	231	29	32	9.0000
DDL	chr5:176523537-176523777(+)$1	240	30	33	9.0000
HHH	chr17:1553944-1554203(-)$1	259	28	31	9.0000
eem	chr17:73842630-73842936(-)$1	306	121	124	9.0000
fff	chr1:6508836-6509098(+)$1	262	5	8	9.0000
EE:	chr7:73011738-73012029(-)$1	291	4	7	9.0000
ggg	chr16:29818395-29818640(+)$1	245	1	4	9.0000
DDK	chr19:54969628-54969935(+)$1	307	7	10	9.0000
BB{	chr5:140953454-140953719(-)$1	265	3	6	9.0000
bb[	chr2:220435639-220435954(-)$1	315	5	8	9.0000
bbm	chr5:140953327-140953631(-)$1	304	198	201	9.0000
::e	chr17:46136078-46136339(+)$1	261	0	3	9.0000
GGG	chr9:124064137-124064450(+)$1	313	80	83	9.0000
FFF	chr17:7416315-7416592(+)$1	277	8	11	9.0000
g""	chr15:69747422-69747689(+)$1	267	22	25	9.0000
nne	chr11:2154324-2154548(-)$1	224	15	18	9.0000
hhh	chr1:230841606-230841898(-)$1	292	38	41	9.0000
EEE	chr17:26694288-26694548(-)$1	260	2	5	9.0000
ccc	chr11:63765089-63765381(+)$1	292	120	123	9.0000
ccc	chr3:48461483-48461773(-)$1	290	73	76	9.0000
hhh	chr2:220432810-220433080(-)$1	270	55	58	9.0000
ddd	chr17:1648900-1649116(+)$1	216	2	5	9.0000
ddd	chr1:230846369-230846700(-)$1	331	45	48	9.0000
bb"	chr7:73011659-73011938(-)$1	279	39	42	9.0000
BBF	chr7:5568138-5568417(-)$1	279	10	13	9.0000
cch	chr19:6677781-6678029(-)$1	248	36	39	9.0000
ee[	chr17:1649020-1649290(+)$1	270	57	60	9.0000
ddd	chr17:80049381-80049600(-)$1	219	8	11	9.0000
2cc	chr17:79915584-79915863(-)$1	279	44	47	9.0000
dde	chr1:230839894-230840136(-)$1	242	16	19	9.0000
DGG	chrX:70443662-70443906(+)$1	244	8	11	9.0000
fff	chr1:161192054-161192290(-)$1	236	26	29	9.0000
fff	chr6:34212917-34213193(+)$1	276	21	24	9.0000
ddd	chr11:72425137-72425431(-)$1	294	1	4	9.0000
BB{	chr1:11986188-11986449(-)$1	261	12	15	9.0000
DD{	chr3:33155409-33155716(+)$1	307	2	5	9.0000
ccc	chr14:101200405-101200669(+)$1	264	49	52	9.0000
:::	chr11:2156568-2156801(-)$1	233	0	3	9.0000
eee	chr19:1397184-1397467(-)$1	283	34	37	9.0000
ccc	chr14:101200381-101200605(+)$1	224	12	15	9.0000
ddd	chr3:186336224-186336434(+)$1	210	20	23	9.0000
eee	chr21:46910648-46910875(+)$1	227	46	49	9.0000
d[c	chr19:45412104-45412359(+)$1	255	7	10	9.0000
:HH	chrX:152966210-152966504(-)$1	294	6	9	9.0000
CCC	chr9:124062097-124062360(+)$1	263	1	4	9.0000
GGG	chr12:125270814-125271068(-)$1	254	24	27	9.0000

#DB
((.	chr17:80046277-80046509(-)$1	1	7	10	9.0000
((.	chr9:116823729-116823969(-)$1	1	20	23	9.0000
(((	chr16:2817808-2818086(+)$1	1	14	17	9.0000
(((	chr14:95053795-95054060(+)$1	1	23	26	9.0000
(((	chr14:94849433-94849677(-)$1	1	11	14	9.0000
(((	chr12:49434841-49435115(-)$1	1	0	3	9.0000
(..	chr17:80043532-80043834(-)$1	1	6	9	9.0000
(((	chr12:54058893-54059204(-)$1	1	35	38	9.0000
(((	chr15:69747492-69747717(+)$1	1	15	18	9.0000
)))	chr20:34213979-34214277(-)$1	1	42	45	9.0000
(((	chr4:166300245-166300537(+)$1	1	4	7	9.0000
((.	chr6:34212675-34212951(+)$1	1	79	82	9.0000
(((	chr11:116706394-116706638(-)$1	1	0	3	9.0000
...	chr17:17723517-17723808(-)$1	1	14	17	9.0000
(((	chr19:36640813-36641108(+)$1	1	29	32	9.0000
)).	chr16:30734886-30735195(+)$1	1	84	87	9.0000
(((	chr3:186338401-186338654(+)$1	1	63	66	9.0000
(((	chr1:230841796-230842034(-)$1	1	8	11	9.0000
(((	chr5:138941159-138941480(+)$1	1	3	6	9.0000
(((	chr19:6719243-6719514(-)$1	1	3	6	9.0000
(((	chr6:119670038-119670428(-)$1	1	42	45	9.0000
((.	chr11:2154237-2154523(-)$1	1	4	7	9.0000
(((	chr2:55276881-55277172(-)$1	1	20	23	9.0000
)))	chr1:8922876-8923102(-)$1	1	79	82	9.0000
(((	chrX:47074213-47074561(+)$1	1	19	22	9.0000
((.	chr20:2442226-2442551(-)$1	1	12	15	9.0000
)))	chr17:76967606-76967878(-)$1	1	45	48	9.0000
(((	chr7:5428607-5428868(-)$1	1	5	8	9.0000
(((	chr6:138752507-138752768(-)$1	1	29	32	9.0000
..(	chr12:56506560-56506899(+)$1	1	45	48	9.0000
(((	chr11:2154651-2154876(-)$1	1	16	19	9.0000
(((	chr12:9254025-9254282(-)$1	1	42	45	9.0000
)))	chr6:42897241-42897501(+)$1	1	53	56	9.0000
)))	chr17:41610466-41610725(-)$1	1	93	96	9.0000
)))	chr22:42301397-42301659(+)$1	1	61	64	9.0000
(((	chr17:79826391-79826629(-)$1	1	13	16	9.0000
.((	chr16:50667286-50667572(+)$1	1	1	4	9.0000
((.	chr11:2154715-2154921(-)$1	1	25	28	9.0000
(((	chr7:45928317-45928592(+)$1	1	6	9	9.0000
((.	chr19:2227777-2228083(+)$1	1	14	17	9.0000
(((	chr11:64089054-64089330(+)$1	1	25	28	9.0000
...	chr17:1648567-1648789(+)$1	1	1	4	9.0000
(((	chr15:90328375-90328699(-)$1	1	0	3	9.0000
((.	chr19:45323912-45324165(+)$1	1	48	51	9.0000
(((	chr17:66526481-66526752(+)$1	1	40	43	9.0000
(((	chr17:76968530-76968793(-)$1	1	67	70	9.0000
((.	chr8:145065544-145065844(+)$1	1	24	27	9.0000
.((	chr19:49469804-49470046(+)$1	1	120	123	9.0000
(((	chr11:116707960-116708187(-)$1	1	11	14	9.0000
)).	chr11:2156508-2156767(-)$1	1	61	64	9.0000
(((	chr11:319633-319960(-)$1	1	5	8	9.0000
((.	chr12:125262891-125263169(-)$1	1	0	3	9.0000
(((	chr8:11705473-11705704(-)$1	1	29	32	9.0000
((.	chr5:176523537-176523777(+)$1	1	30	33	9.0000
(((	chr17:1553944-1554203(-)$1	1	28	31	9.0000
((.	chr17:73842630-73842936(-)$1	1	121	124	9.0000
(((	chr1:6508836-6509098(+)$1	1	5	8	9.0000
((.	chr7:73011738-73012029(-)$1	1	4	7	9.0000
(((	chr16:29818395-29818640(+)$1	1	1	4	9.0000
((.	chr19:54969628-54969935(+)$1	1	7	10	9.0000
((.	chr5:140953454-140953719(-)$1	1	3	6	9.0000
((.	chr2:220435639-220435954(-)$1	1	5	8	9.0000
((.	chr5:140953327-140953631(-)$1	1	198	201	9.0000
..(	chr17:46136078-46136339(+)$1	1	0	3	9.0000
(((	chr9:124064137-124064450(+)$1	1	80	83	9.0000
(((	chr17:7416315-7416592(+)$1	1	8	11	9.0000
(..	chr15:69747422-69747689(+)$1	1	22	25	9.0000
..)	chr11:2154324-2154548(-)$1	1	15	18	9.0000
)))	chr1:230841606-230841898(-)$1	1	38	41	9.0000
(((	chr17:26694288-26694548(-)$1	1	2	5	9.0000
(((	chr11:63765089-63765381(+)$1	1	120	123	9.0000
(((	chr3:48461483-48461773(-)$1	1	73	76	9.0000
(((	chr2:220432810-220433080(-)$1	1	55	58	9.0000
(((	chr17:1648900-1649116(+)$1	1	2	5	9.0000
(((	chr1:230846369-230846700(-)$1	1	45	48	9.0000
((.	chr7:73011659-73011938(-)$1	1	39	42	9.0000
(((	chr7:5568138-5568417(-)$1	1	10	13	9.0000
(((	chr19:6677781-6678029(-)$1	1	36	39	9.0000
((.	chr17:1649020-1649290(+)$1	1	57	60	9.0000
(((	chr17:80049381-80049600(-)$1	1	8	11	9.0000
.))	chr17:79915584-79915863(-)$1	1	44	47	9.0000
(((	chr1:230839894-230840136(-)$1	1	16	19	9.0000
(((	chrX:70443662-70443906(+)$1	1	8	11	9.0000
(((	chr1:161192054-161192290(-)$1	1	26	29	9.0000
(((	chr6:34212917-34213193(+)$1	1	21	24	9.0000
(((	chr11:72425137-72425431(-)$1	1	1	4	9.0000
((.	chr1:11986188-11986449(-)$1	1	12	15	9.0000
((.	chr3:33155409-33155716(+)$1	1	2	5	9.0000
)))	chr14:101200405-101200669(+)$1	1	49	52	9.0000
...	chr11:2156568-2156801(-)$1	1	0	3	9.0000
(((	chr19:1397184-1397467(-)$1	1	34	37	9.0000
(((	chr14:101200381-101200605(+)$1	1	12	15	9.0000
)))	chr3:186336224-186336434(+)$1	1	20	23	9.0000
(((	chr21:46910648-46910875(+)$1	1	46	49	9.0000
(.(	chr19:45412104-45412359(+)$1	1	7	10	9.0000
.((	chrX:152966210-152966504(-)$1	1	6	9	9.0000
(((	chr9:124062097-124062360(+)$1	1	1	4	9.0000
(((	chr12:125270814-125271068(-)$1	1	24	27	9.0000

#PSSM
G : 0.93	g : 0.06	
G : 0.93	g : 0.06	
C : 0.93	c : 0.06	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_UTR_m1_run1.nuc.txt

#NT
AGGGCUGGGGGAGGUGGGAGGGAUCA	chr14:23778303-23778565(+)$1	262	111	137	29.4285
ggugguggugguggugguugguugau	chr17:45912165-45912375(+)$1	210	99	125	51.5714
ggugguggugguggugguugguugau	chr17:45912161-45912365(+)$1	204	103	129	51.5714
gguggggguggggguCUGUGGUUUCC	chr3:41241454-41241736(+)$1	282	2	28	35.8571
GGAGGUGGAGGAGGUGGAGGGGGUGG	chr7:104752716-104752963(-)$1	247	105	131	37.2857
ggugguggugguggugguugguugau	chr17:45912175-45912393(+)$1	218	89	115	51.5714

#otherMatches

#Struct PSSM
dda]cccccc]bb]bb22ccc4444c	chr7:104752939-104753209(-)$1	270	105	131	43.0000
gggggggddddddddccc!!a!!ccc	chr14:23778303-23778565(+)$1	262	111	137	29.4285
bb[bb[ccc"""ddddeeeee!!ccc	chr17:45912165-45912375(+)$1	210	99	125	51.5714
[dddd[bb[cccddddeeeee!!ccc	chr17:45912161-45912365(+)$1	204	103	129	51.5714
DDD:GGGGGGGKKDDDD{BB{CCCff	chr3:41241454-41241736(+)$1	282	2	28	35.8571
ddd[a"""bbbb[ccc[bb!!ccc""	chr7:104752716-104752963(-)$1	247	105	131	37.2857
cc[bb[ccc"""ddddeeeee!!ccc	chr17:45912175-45912393(+)$1	218	89	115	51.5714

#DB
))).)))))).)).))..)))....)	chr7:104752939-104753209(-)$1	1	105	131	43.0000
((((((((((((((((((..(..(((	chr14:23778303-23778565(+)$1	1	111	137	29.4285
((.((.(((...(((((((((..(((	chr17:45912165-45912375(+)$1	1	99	125	51.5714
.((((.((.((((((((((((..(((	chr17:45912161-45912365(+)$1	1	103	129	51.5714
(((.(((((((..((((.((.(((((	chr3:41241454-41241736(+)$1	1	2	28	35.8571
(((.(...((((.(((.((..(((..	chr7:104752716-104752963(-)$1	1	105	131	37.2857
((.((.(((...(((((((((..(((	chr17:45912175-45912393(+)$1	1	89	115	51.5714

#PSSM
g : 0.57	G : 0.28	A : 0.14	
g : 0.57	G : 0.42	
u : 0.57	U : 0.14	G : 0.14	A : 0.14	
g : 0.57	G : 0.42	
g : 0.57	G : 0.28	C : 0.14	
U : 0.42	u : 0.42	g : 0.14	
g : 0.57	G : 0.42	
g : 0.57	G : 0.42	
u : 0.57	U : 0.14	G : 0.14	A : 0.14	
g : 0.57	G : 0.42	
g : 0.57	G : 0.42	
A : 0.42	u : 0.42	g : 0.14	
g : 0.57	G : 0.42	
g : 0.57	G : 0.42	
u : 0.57	U : 0.28	A : 0.14	
G : 0.42	g : 0.42	C : 0.14	
G : 0.42	g : 0.42	U : 0.14	
u : 0.42	A : 0.28	G : 0.28	
u : 0.42	G : 0.28	A : 0.14	U : 0.14	
G : 0.57	g : 0.42	
G : 0.57	g : 0.42	
G : 0.42	u : 0.42	U : 0.14	
u : 0.42	G : 0.28	A : 0.14	U : 0.14	
U : 0.42	g : 0.42	G : 0.14	
a : 0.42	C : 0.28	A : 0.14	G : 0.14	
u : 0.42	C : 0.28	A : 0.14	G : 0.14	

#score	300.2857142857144
#seq	7
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_transcript_m3_run1.nuc.txt

#NT
Ucacacacaca	chr16:4854960-4855227(-)$1	267	254	265	26.2758
ACACACACACA	chr5:149157641-149158005(+)$1	364	75	86	30.6724
gcacacacaca	chr18:75696888-75697096(-)$1	208	29	40	26.4482
acacacaccca	chr20:62310090-62310332(+)$1	242	83	94	26.1034
acacacacacg	chr6:158051228-158051477(+)$1	249	226	237	25.9310
acgcacacaca	chr6:158291316-158291612(+)$1	296	19	30	25.9310
acacacacaca	chr4:1019537-1019799(+)$1	262	117	128	30.6724
acacacacaca	chr12:70717491-70717806(+)$1	315	198	209	30.6724
ACACACACACU	chr2:70891944-70892217(-)$1	273	34	45	25.9310
acacacauaca	chr21:46915724-46915952(+)$1	228	205	216	26.1896
acacacacaca	chr7:128498566-128498805(+)$1	239	64	75	30.6724
ACAUACACACA	chr21:46904538-46904748(+)$1	210	35	46	26.0172
acacccacaca	chr17:80786092-80786342(+)$1	250	39	50	26.0172
ACACACACACA	chr5:150487387-150487660(-)$1	273	239	250	30.6724
ACACACACACA	chr5:139050325-139050617(+)$1	292	138	149	30.6724
acacacauaca	chr22:20052339-20052595(+)$1	256	149	160	26.1896
acacacacaca	chr8:41574577-41574851(-)$1	274	89	100	30.6724
ACACACUCACA	chr15:75952772-75953084(+)$1	312	16	27	26.0172
aCACACACACA	chr1:52910522-52910759(-)$1	237	35	46	30.6724
acacacacaca	chr3:196043557-196043809(-)$1	252	10	21	30.6724
acacacacaca	chr17:80786547-80786800(+)$1	253	81	92	30.6724
acacacacaca	chr5:132243116-132243456(-)$1	340	125	136	30.6724
AGACACACACA	chr13:114561004-114561227(-)$1	223	31	42	26.0172
acacacacaca	chr2:145241765-145242013(-)$1	248	234	245	30.6724
acacacacaca	chr6:169000496-169000790(+)$1	294	0	11	30.6724
acacacacaca	chr8:15576876-15577186(+)$1	310	129	140	30.6724
acacacacaca	chr1:92826583-92826885(+)$1	302	76	87	30.6724
acacacacaca	chr8:57107026-57107340(-)$1	314	136	147	30.6724
acacucacaca	chr22:48043779-48044008(+)$1	229	1	12	26.0172
ccacacacaca	chr4:3231059-3231356(+)$1	297	207	218	26.3620
acucacacaca	chr6:158052028-158052280(+)$1	252	29	40	25.9310
acacacacaca	chr2:97467403-97467664(+)$1	261	92	103	30.6724
acacacacaca	chr2:20536295-20536546(-)$1	251	79	90	30.6724
acacacucaca	chr22:47555403-47555663(+)$1	260	9	20	26.0172
acacacacaca	chr19:4036573-4036906(+)$1	333	18	29	30.6724
acacacaccca	chr12:131502374-131502722(+)$1	348	13	24	26.1034
acagacacaca	chr7:22548415-22548722(-)$1	307	154	165	26.1034
acacacauaca	chr16:81504789-81505054(+)$1	265	23	34	26.1896
acacacacaca	chr9:94601894-94602136(-)$1	242	158	169	30.6724
acacacacaca	chr21:46858272-46858507(+)$1	235	13	24	30.6724
ACACACACACA	chr14:100591197-100591451(+)$1	254	25	36	30.6724
CCACACACACA	chr18:74609365-74609623(+)$1	258	86	97	26.3620
AGACACACACA	chr9:94972889-94973179(-)$1	290	161	172	26.0172
acacacacaca	chr21:46904169-46904403(+)$1	234	3	14	30.6724
acacacacaca	chr21:9923216-9923427(-)$1	211	1	12	30.6724
acacacacaca	chr2:145241578-145241848(-)$1	270	69	80	30.6724
gcacacacaca	chr13:113539511-113539770(+)$1	259	144	155	26.4482
acacacacaca	chr14:65231555-65231807(-)$1	252	48	59	30.6724
ACACACACUCA	chr19:2348455-2348746(+)$1	291	27	38	26.0172
ACAGACACACA	chr1:27916098-27916341(-)$1	243	127	138	26.1034
ACACACACACA	chr5:19125139-19125423(-)$1	284	136	147	30.6724
ACACACACACA	chr2:178214781-178215016(-)$1	235	5	16	30.6724
acacacacaca	chr8:38775602-38775906(+)$1	304	133	144	30.6724
acacacacaca	chr16:11266031-11266328(+)$1	297	155	166	30.6724
gcacacacaca	chr22:45128634-45128924(+)$1	290	121	132	26.4482
acacgcacaca	chr21:46915609-46915818(+)$1	209	20	31	26.0172
acacaaacaca	chr7:153104761-153105016(-)$1	255	56	67	25.8448

#otherMatches

#Struct PSSM
:::::::::::	chr3:196043810-196044054(-)$1	244	1	12	30.6724
mmmmggggggg	chr16:4854960-4855227(-)$1	267	254	265	26.2758
::::::::JJJ	chr5:149157641-149158005(+)$1	364	75	86	30.6724
c::::::::::	chr18:75696888-75697096(-)$1	208	29	40	26.4482
:::::::::::	chr20:62310090-62310332(+)$1	242	83	94	26.1034
GGGGGGGZZZD	chr6:158051228-158051477(+)$1	249	226	237	25.9310
LLCCC::::::	chr6:158291316-158291612(+)$1	296	19	30	25.9310
!eeeeesssss	chr4:1019537-1019799(+)$1	262	117	128	30.6724
=======:::f	chr12:70717491-70717806(+)$1	315	198	209	30.6724
[bbzzzzzzzz	chr2:70891944-70892217(-)$1	273	34	45	25.9310
:::::::::::	chr21:46915724-46915952(+)$1	228	205	216	26.1896
:::::::::::	chr7:128498566-128498805(+)$1	239	64	75	30.6724
ggeeeeeoooo	chr21:46904538-46904748(+)$1	210	35	46	26.0172
+++++++++++	chr17:80786092-80786342(+)$1	250	39	50	26.0172
fxxxxxxxxxx	chr5:150487387-150487660(-)$1	273	239	250	30.6724
dd::::::eee	chr5:139050325-139050617(+)$1	292	138	149	30.6724
ffff[bbqqqq	chr22:20052339-20052595(+)$1	256	149	160	26.1896
qqqqqqqgggg	chr8:41574577-41574851(-)$1	274	89	100	30.6724
CCC:::::::e	chr15:75952772-75953084(+)$1	312	16	27	26.0172
^^^^^^^^^^^	chr1:52910522-52910759(-)$1	237	35	46	30.6724
:::::::::::	chr3:196043557-196043809(-)$1	252	10	21	30.6724
sssssssssee	chr17:80786547-80786800(+)$1	253	81	92	30.6724
:::::::::::	chr5:132243116-132243456(-)$1	340	125	136	30.6724
:::::::dddd	chr13:114561004-114561227(-)$1	223	31	42	26.0172
d::::::::::	chr2:145241765-145242013(-)$1	248	234	245	30.6724
:::::::::::	chr6:169000496-169000790(+)$1	294	0	11	30.6724
____DDDD:::	chr8:15576876-15577186(+)$1	310	129	140	30.6724
^^^^^^^^^^^	chr1:92826583-92826885(+)$1	302	76	87	30.6724
:::::::::::	chr8:57107026-57107340(-)$1	314	136	147	30.6724
:::::::::::	chr22:48043779-48044008(+)$1	229	1	12	26.0172
:::::::::GG	chr4:3231059-3231356(+)$1	297	207	218	26.3620
::::HHHHHHH	chr6:158052028-158052280(+)$1	252	29	40	25.9310
:::::::::::	chr2:97467403-97467664(+)$1	261	92	103	30.6724
^^^^^^^^^^^	chr2:20536295-20536546(-)$1	251	79	90	30.6724
:::::::::::	chr22:47555403-47555663(+)$1	260	9	20	26.0172
:::::::::::	chr19:4036573-4036906(+)$1	333	18	29	30.6724
FF:::::::::	chr12:131502374-131502722(+)$1	348	13	24	26.1034
:::::::::::	chr7:22548415-22548722(-)$1	307	154	165	26.1034
G{JJJJJJJJJ	chr16:81504789-81505054(+)$1	265	23	34	26.1896
:::::::::::	chr9:94601894-94602136(-)$1	242	158	169	30.6724
DDDD{BBKKA:	chr21:46858272-46858507(+)$1	235	13	24	30.6724
fff^^^^^^^^	chr14:100591197-100591451(+)$1	254	25	36	30.6724
f0000000000	chr18:74609365-74609623(+)$1	258	86	97	26.3620
d"""hhhhhhh	chr9:94972889-94973179(-)$1	290	161	172	26.0172
EEERRRRRRRR	chr21:46904169-46904403(+)$1	234	3	14	30.6724
:::::::::::	chr21:9923216-9923427(-)$1	211	1	12	30.6724
d::::::::::	chr2:145241578-145241848(-)$1	270	69	80	30.6724
gggg::::::c	chr13:113539511-113539770(+)$1	259	144	155	26.4482
:::::::::::	chr14:65231555-65231807(-)$1	252	48	59	30.6724
::::::::ccc	chr19:2348455-2348746(+)$1	291	27	38	26.0172
:::::::::::	chr1:27916098-27916341(-)$1	243	127	138	26.1034
:::::EEEEE}	chr5:19125139-19125423(-)$1	284	136	147	30.6724
:::::::::::	chr2:178214781-178215016(-)$1	235	5	16	30.6724
:::::::::::	chr8:38775602-38775906(+)$1	304	133	144	30.6724
:::::::::::	chr16:11266031-11266328(+)$1	297	155	166	30.6724
cc:::::::::	chr22:45128634-45128924(+)$1	290	121	132	26.4482
sssccc:::::	chr21:46915609-46915818(+)$1	209	20	31	26.0172
:::::::::::	chr7:153104761-153105016(-)$1	255	56	67	25.8448

#DB
...........	chr3:196043810-196044054(-)$1	1	1	12	30.6724
....)))))))	chr16:4854960-4855227(-)$1	1	254	265	26.2758
........(((	chr5:149157641-149158005(+)$1	1	75	86	30.6724
)..........	chr18:75696888-75697096(-)$1	1	29	40	26.4482
...........	chr20:62310090-62310332(+)$1	1	83	94	26.1034
)))))))...)	chr6:158051228-158051477(+)$1	1	226	237	25.9310
..(((......	chr6:158291316-158291612(+)$1	1	19	30	25.9310
.(((((.....	chr4:1019537-1019799(+)$1	1	117	128	30.6724
)))))))...(	chr12:70717491-70717806(+)$1	1	198	209	30.6724
.((........	chr2:70891944-70892217(-)$1	1	34	45	25.9310
...........	chr21:46915724-46915952(+)$1	1	205	216	26.1896
...........	chr7:128498566-128498805(+)$1	1	64	75	30.6724
))(((((....	chr21:46904538-46904748(+)$1	1	35	46	26.0172
...........	chr17:80786092-80786342(+)$1	1	39	50	26.0172
(..........	chr5:150487387-150487660(-)$1	1	239	250	30.6724
))......(((	chr5:139050325-139050617(+)$1	1	138	149	30.6724
((((.((....	chr22:20052339-20052595(+)$1	1	149	160	26.1896
.......))))	chr8:41574577-41574851(-)$1	1	89	100	30.6724
(((.......(	chr15:75952772-75953084(+)$1	1	16	27	26.0172
...........	chr1:52910522-52910759(-)$1	1	35	46	30.6724
...........	chr3:196043557-196043809(-)$1	1	10	21	30.6724
.........))	chr17:80786547-80786800(+)$1	1	81	92	30.6724
...........	chr5:132243116-132243456(-)$1	1	125	136	30.6724
.......((((	chr13:114561004-114561227(-)$1	1	31	42	26.0172
)..........	chr2:145241765-145242013(-)$1	1	234	245	30.6724
...........	chr6:169000496-169000790(+)$1	1	0	11	30.6724
....))))...	chr8:15576876-15577186(+)$1	1	129	140	30.6724
...........	chr1:92826583-92826885(+)$1	1	76	87	30.6724
...........	chr8:57107026-57107340(-)$1	1	136	147	30.6724
...........	chr22:48043779-48044008(+)$1	1	1	12	26.0172
.........))	chr4:3231059-3231356(+)$1	1	207	218	26.3620
....(((((((	chr6:158052028-158052280(+)$1	1	29	40	25.9310
...........	chr2:97467403-97467664(+)$1	1	92	103	30.6724
...........	chr2:20536295-20536546(-)$1	1	79	90	30.6724
...........	chr22:47555403-47555663(+)$1	1	9	20	26.0172
...........	chr19:4036573-4036906(+)$1	1	18	29	30.6724
((.........	chr12:131502374-131502722(+)$1	1	13	24	26.1034
...........	chr7:22548415-22548722(-)$1	1	154	165	26.1034
(.(((((((((	chr16:81504789-81505054(+)$1	1	23	34	26.1896
...........	chr9:94601894-94602136(-)$1	1	158	169	30.6724
((((.((..(.	chr21:46858272-46858507(+)$1	1	13	24	30.6724
(((........	chr14:100591197-100591451(+)$1	1	25	36	30.6724
)..........	chr18:74609365-74609623(+)$1	1	86	97	26.3620
(...(((((((	chr9:94972889-94973179(-)$1	1	161	172	26.0172
(((........	chr21:46904169-46904403(+)$1	1	3	14	30.6724
...........	chr21:9923216-9923427(-)$1	1	1	12	30.6724
)..........	chr2:145241578-145241848(-)$1	1	69	80	30.6724
))))......(	chr13:113539511-113539770(+)$1	1	144	155	26.4482
...........	chr14:65231555-65231807(-)$1	1	48	59	30.6724
........(((	chr19:2348455-2348746(+)$1	1	27	38	26.0172
...........	chr1:27916098-27916341(-)$1	1	127	138	26.1034
.....))))).	chr5:19125139-19125423(-)$1	1	136	147	30.6724
...........	chr2:178214781-178215016(-)$1	1	5	16	30.6724
...........	chr8:38775602-38775906(+)$1	1	133	144	30.6724
...........	chr16:11266031-11266328(+)$1	1	155	166	30.6724
)).........	chr22:45128634-45128924(+)$1	1	121	132	26.4482
...))).....	chr21:46915609-46915818(+)$1	1	20	31	26.0172
...........	chr7:153104761-153105016(-)$1	1	56	67	25.8448

#PSSM
a : 0.67	A : 0.22	g : 0.05	U : 0.01	c : 0.01	C : 0.01	
c : 0.74	C : 0.22	G : 0.03	
a : 0.70	A : 0.25	g : 0.01	u : 0.01	
c : 0.72	C : 0.22	U : 0.01	g : 0.01	G : 0.01	
a : 0.68	A : 0.25	c : 0.01	u : 0.01	g : 0.01	
c : 0.72	C : 0.25	a : 0.01	
a : 0.72	A : 0.24	U : 0.01	u : 0.01	
c : 0.68	C : 0.25	u : 0.05	
a : 0.70	A : 0.24	c : 0.03	U : 0.01	
c : 0.74	C : 0.25	
a : 0.72	A : 0.24	g : 0.01	U : 0.01	

#score	1655.8965517241386
#seq	58
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_CDS_m3_run2.nuc.txt

#NT
UAUUGAUCCCCACCUCCAAAUAUCUCAUCAACAACCGACUAAUCACCACCCAACAAUGACUAAUCAAACUAACCUCAAAACAAAUGAUAGCCAUACACAACACUAAAGGACGAACCUGAUCUCUUAUACUAGUAUCCUUAAUCAUUUUUAUUGCCACAACUAACCUCCUCGGACUCCUGCCUCACUCAU	chrM:8605-8809(+)$1	204	7	196	567.0000
UAUUGAUCCCCACCUCCAAAUAUCUCAUCAACAACCGACUAAUCACCACCCAACAAUGACUAAUCAAACUAACCUCAAAACAAAUGAUAGCCAUACACAACACUAAAGGACGAACCUGAUCUCUUAUACUAGUAUCCUUAAUCAUUUUUAUUGCCACAACUAACCUCCUCGGACUCCUGCCUCACUCAU	chrM:8598-8801(+)$1	203	14	203	567.0000

#otherMatches

#Struct PSSM
::::::::::::::::::::::::::::::::::dddd+++++++++++++++ffffff++++++++++++++++++++++ggggggg####dddd))))))))))cccnnnnnccc>>>>>>>>>>>>>>dddd55555gggggggffffff>>>>>>>>>>>>>>>dddd:::::::::::::::::	chrM:8609-8811(+)$1	202	3	192	567.0000
::::::::::::::::::::::::::::::::::dddd+++++++++++++++ffffff++++++++++++++++++++++ggggggg####dddd))))))))))cccnnnnnccc>>>>>>>>>>>>>>dddd55555gggggggffffff>>>>>>>>>>>>>>>dddd:::::::::::::::::	chrM:8605-8809(+)$1	204	7	196	567.0000
::::::::::::::::::::::::::::::::::dddd+++++++++++++++ffffff++++++++++++++++++++++ggggggg####dddd))))))))))cccnnnnnccc>>>>>>>>>>>>>>dddd55555gggggggffffff>>>>>>>>>>>>>>>dddd:::::::::::::::::	chrM:8598-8801(+)$1	203	14	203	567.0000

#DB
..................................((((...............((((((......................(((((((....((((..........(((.....)))..............)))).....)))))))))))))...............)))).................	chrM:8609-8811(+)$1	1	3	192	567.0000
..................................((((...............((((((......................(((((((....((((..........(((.....)))..............)))).....)))))))))))))...............)))).................	chrM:8605-8809(+)$1	1	7	196	567.0000
..................................((((...............((((((......................(((((((....((((..........(((.....)))..............)))).....)))))))))))))...............)))).................	chrM:8598-8801(+)$1	1	14	203	567.0000

#PSSM
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	

#score	1701.0
#seq	3
#width	189
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_transcript_m3_run1.nuc.txt

#NT
UUAUUUU	chr7:155473215-155473488(+)$1	273	49	56	17.2096
UUGUUUU	chr2:54885042-54885281(+)$1	239	231	238	14.1451
UCAUUUU	chr17:65214665-65214968(-)$1	303	243	250	13.3387
UUAUUUU	chr11:9463527-9463821(+)$1	294	86	93	17.2096
uuauuau	chr6:144803306-144803559(+)$1	253	226	233	13.0161
UUAUUUA	chr5:138223148-138223431(+)$1	283	249	256	13.2580
UCAUUUU	chr5:73153856-73154141(+)$1	285	13	20	13.3387
UGAUUUU	chr6:168275914-168276228(+)$1	314	18	25	13.3387
UUCUUUU	chr1:245019709-245019961(-)$1	252	20	27	13.6612
UUGUUUU	chr2:44201222-44201488(-)$1	266	39	46	14.1451
uuauuuu	chr2:21252741-21252974(-)$1	233	2	9	17.2096
UUGUUUU	chr9:36204010-36204279(+)$1	269	193	200	14.1451
AUAUUUU	chr6:99855874-99856156(-)$1	282	268	275	13.0967
uuauuuu	chr2:198265050-198265258(-)$1	208	89	96	17.2096
UUAUUUU	chr2:61719358-61719629(-)$1	271	200	207	17.2096
UUAUUAU	chr1:171504474-171504754(+)$1	280	6	13	13.0161
UUAUUUU	chr5:170818609-170818836(+)$1	227	199	206	17.2096
UUAUUUU	chr12:26811950-26812169(-)$1	219	178	185	17.2096
UUGUUUU	chr7:103234171-103234420(-)$1	249	37	44	14.1451
UUAUUUC	chr2:216245659-216245902(-)$1	243	46	53	13.3387
UUAUUUC	chr13:25067716-25067971(-)$1	255	3	10	13.3387
uuauuuc	chr2:96968798-96969050(-)$1	252	188	195	13.3387
UUAUGUU	chr2:101622401-101622661(+)$1	260	4	11	12.5322
UCAUUUU	chr7:148543482-148543763(-)$1	281	56	63	13.3387
UUAUUUU	chr1:70716194-70716470(+)$1	276	10	17	17.2096
UUAUUUU	chr12:69646790-69647036(+)$1	246	2	9	17.2096
UCAUUUU	chr14:39772587-39772811(+)$1	224	23	30	13.3387
UUAUUUU	chr2:54864809-54865029(+)$1	220	16	23	17.2096
UUAUUUA	chr3:194181288-194181580(-)$1	292	222	229	13.2580
UUAUGUU	chr17:16042307-16042564(-)$1	257	26	33	12.5322
UUAUUUA	chr3:41277995-41278299(+)$1	304	223	230	13.2580
UUCUUUU	chr2:182766396-182766708(+)$1	312	84	91	13.6612
UUAUUUU	chr2:198288432-198288643(-)$1	211	141	148	17.2096
UUAUUAU	chr2:11337234-11337569(-)$1	335	20	27	13.0161
UUAUUUU	chr4:166414226-166414521(+)$1	295	77	84	17.2096
UAAUUUU	chr17:62500021-62500306(-)$1	285	39	46	13.1774
ugauuuu	chr2:99976838-99977107(+)$1	269	8	15	13.3387
UUGUUUU	chr16:18845608-18845869(-)$1	261	57	64	14.1451
UAAUUUU	chr1:24973490-24973785(+)$1	295	7	14	13.1774
UUAUUUA	chr2:201331951-201332216(+)$1	265	5	12	13.2580
UUGUUUU	chr13:107211743-107212035(-)$1	292	5	12	14.1451
GUAUUUU	chr20:3545913-3546155(+)$1	242	1	8	12.9354
UUAUUUU	chr1:171505067-171505307(+)$1	240	22	29	17.2096
UUCUUUU	chr6:144742993-144743206(+)$1	213	9	16	13.6612
AUAUUUU	chr7:45932518-45932757(+)$1	239	150	157	13.0967
UUAUUUU	chr2:63086213-63086470(+)$1	257	80	87	17.2096
uuguuuu	chr10:33216919-33217151(-)$1	232	188	195	14.1451
AUAUUUU	chr11:93470116-93470376(-)$1	260	213	220	13.0967
UGAUUUU	chr2:168919924-168920180(-)$1	256	38	45	13.3387
UUAUUUC	chr7:156745067-156745412(+)$1	345	80	87	13.3387
UUCUUUU	chr2:236706299-236706572(+)$1	273	78	85	13.6612
UUGUUUU	chr4:186231765-186232069(+)$1	304	223	230	14.1451
GUAUUUU	chr4:73967992-73968204(-)$1	212	112	119	12.9354
UUAUUAU	chr1:226349146-226349443(-)$1	297	218	225	13.0161
AUAUUUU	chr2:128937258-128937520(+)$1	262	238	245	13.0967
UUGUUUU	chr3:37388583-37388801(+)$1	218	16	23	14.1451
UUGUUUU	chr9:114133928-114134168(-)$1	240	36	43	14.1451
UGAUUUU	chr20:61538582-61538815(-)$1	233	28	35	13.3387
UUAUUAU	chr2:153467938-153468210(+)$1	272	223	230	13.0161
CUAUUUU	chr9:131360577-131360813(+)$1	236	62	69	12.8548
UUAUUUU	chr21:38510860-38511107(+)$1	247	213	220	17.2096

#otherMatches

#Struct PSSM
bb[eeee	chr8:62596489-62596810(-)$1	321	49	56	13.3387
:::::JJ	chr7:155473215-155473488(+)$1	273	49	56	17.2096
JJJJJJJ	chr2:54885042-54885281(+)$1	239	231	238	14.1451
GG::ggg	chr17:65214665-65214968(-)$1	303	243	250	13.3387
dddd[ff	chr11:9463527-9463821(+)$1	294	86	93	17.2096
:::::::	chr6:144803306-144803559(+)$1	253	226	233	13.0161
hh55555	chr5:138223148-138223431(+)$1	283	249	256	13.2580
:::JJJJ	chr5:73153856-73154141(+)$1	285	13	20	13.3387
sssssss	chr6:168275914-168276228(+)$1	314	18	25	13.3387
#eeeeem	chr1:245019709-245019961(-)$1	252	20	27	13.6612
C{CCC{F	chr2:44201222-44201488(-)$1	266	39	46	14.1451
:::::::	chr2:21252741-21252974(-)$1	233	2	9	17.2096
iiiiiii	chr9:36204010-36204279(+)$1	269	193	200	14.1451
:::::::	chr6:99855874-99856156(-)$1	282	268	275	13.0967
hhhhhhd	chr2:198265050-198265258(-)$1	208	89	96	17.2096
II:::ff	chr2:61719358-61719629(-)$1	271	200	207	17.2096
IIIIIII	chr1:171504474-171504754(+)$1	280	6	13	13.0161
[cccooo	chr5:170818609-170818836(+)$1	227	199	206	17.2096
ggggggg	chr12:26811950-26812169(-)$1	219	178	185	17.2096
C{FFFFF	chr7:103234171-103234420(-)$1	249	37	44	14.1451
wwwwwww	chr2:216245659-216245902(-)$1	243	46	53	13.3387
:::::::	chr13:25067716-25067971(-)$1	255	3	10	13.3387
II:::::	chr2:96968798-96969050(-)$1	252	188	195	13.3387
=======	chr2:101622401-101622661(+)$1	260	4	11	12.5322
iiiiiii	chr7:148543482-148543763(-)$1	281	56	63	13.3387
qqqqqqq	chr1:70716194-70716470(+)$1	276	10	17	17.2096
:::::DD	chr12:69646790-69647036(+)$1	246	2	9	17.2096
"cccmmm	chr14:39772587-39772811(+)$1	224	23	30	13.3387
MMMGGGG	chr2:54864809-54865029(+)$1	220	16	23	17.2096
gggggg!	chr3:194181288-194181580(-)$1	292	222	229	13.2580
FFFFF:f	chr17:16042307-16042564(-)$1	257	26	33	12.5322
qqqqqqq	chr3:41277995-41278299(+)$1	304	223	230	13.2580
hh::::h	chr2:182766396-182766708(+)$1	312	84	91	13.6612
ddddggg	chr2:198288432-198288643(-)$1	211	141	148	17.2096
lllhhhh	chr2:11337234-11337569(-)$1	335	20	27	13.0161
=eeeee[	chr4:166414226-166414521(+)$1	295	77	84	17.2096
TTTTTTT	chr17:62500021-62500306(-)$1	285	39	46	13.1774
ccc++++	chr2:99976838-99977107(+)$1	269	8	15	13.3387
!!ccc[h	chr16:18845608-18845869(-)$1	261	57	64	14.1451
:::::ii	chr1:24973490-24973785(+)$1	295	7	14	13.1774
:::::::	chr2:201331951-201332216(+)$1	265	5	12	13.2580
%%%====	chr13:107211743-107212035(-)$1	292	5	12	14.1451
::::eee	chr20:3545913-3546155(+)$1	242	1	8	12.9354
:::::::	chr1:171505067-171505307(+)$1	240	22	29	17.2096
NNGGGGG	chr6:144742993-144743206(+)$1	213	9	16	13.6612
eeeemmm	chr7:45932518-45932757(+)$1	239	150	157	13.0967
ccc::::	chr2:63086213-63086470(+)$1	257	80	87	17.2096
::::III	chr10:33216919-33217151(-)$1	232	188	195	14.1451
sssssss	chr11:93470116-93470376(-)$1	260	213	220	13.0967
dddoooo	chr2:168919924-168920180(-)$1	256	38	45	13.3387
:::::::	chr7:156745067-156745412(+)$1	345	80	87	13.3387
qqqqqqq	chr2:236706299-236706572(+)$1	273	78	85	13.6612
e]ggggg	chr4:186231765-186232069(+)$1	304	223	230	14.1451
ee4444f	chr4:73967992-73968204(-)$1	212	112	119	12.9354
EEE:ccc	chr1:226349146-226349443(-)$1	297	218	225	13.0161
ZIIIIII	chr2:128937258-128937520(+)$1	262	238	245	13.0967
E{JJJJJ	chr3:37388583-37388801(+)$1	218	16	23	14.1451
!!fffff	chr9:114133928-114134168(-)$1	240	36	43	14.1451
=======	chr20:61538582-61538815(-)$1	233	28	35	13.3387
ddd]eee	chr2:153467938-153468210(+)$1	272	223	230	13.0161
$$$$$dd	chr9:131360577-131360813(+)$1	236	62	69	12.8548
>>>>>bb	chr21:38510860-38511107(+)$1	247	213	220	17.2096

#DB
((.((((	chr8:62596489-62596810(-)$1	1	49	56	13.3387
.....((	chr7:155473215-155473488(+)$1	1	49	56	17.2096
)))))))	chr2:54885042-54885281(+)$1	1	231	238	14.1451
))..(((	chr17:65214665-65214968(-)$1	1	243	250	13.3387
((((.((	chr11:9463527-9463821(+)$1	1	86	93	17.2096
.......	chr6:144803306-144803559(+)$1	1	226	233	13.0161
)).....	chr5:138223148-138223431(+)$1	1	249	256	13.2580
...((((	chr5:73153856-73154141(+)$1	1	13	20	13.3387
.......	chr6:168275914-168276228(+)$1	1	18	25	13.3387
.(((((.	chr1:245019709-245019961(-)$1	1	20	27	13.6612
(.(((.(	chr2:44201222-44201488(-)$1	1	39	46	14.1451
.......	chr2:21252741-21252974(-)$1	1	2	9	17.2096
)))))))	chr9:36204010-36204279(+)$1	1	193	200	14.1451
.......	chr6:99855874-99856156(-)$1	1	268	275	13.0967
)))))))	chr2:198265050-198265258(-)$1	1	89	96	17.2096
))...((	chr2:61719358-61719629(-)$1	1	200	207	17.2096
(((((((	chr1:171504474-171504754(+)$1	1	6	13	13.0161
.(((...	chr5:170818609-170818836(+)$1	1	199	206	17.2096
)))))))	chr12:26811950-26812169(-)$1	1	178	185	17.2096
(.(((((	chr7:103234171-103234420(-)$1	1	37	44	14.1451
.......	chr2:216245659-216245902(-)$1	1	46	53	13.3387
.......	chr13:25067716-25067971(-)$1	1	3	10	13.3387
)).....	chr2:96968798-96969050(-)$1	1	188	195	13.3387
(((((((	chr2:101622401-101622661(+)$1	1	4	11	12.5322
(((((((	chr7:148543482-148543763(-)$1	1	56	63	13.3387
.......	chr1:70716194-70716470(+)$1	1	10	17	17.2096
.....((	chr12:69646790-69647036(+)$1	1	2	9	17.2096
.(((...	chr14:39772587-39772811(+)$1	1	23	30	13.3387
...((((	chr2:54864809-54865029(+)$1	1	16	23	17.2096
((((((.	chr3:194181288-194181580(-)$1	1	222	229	13.2580
(((((.(	chr17:16042307-16042564(-)$1	1	26	33	12.5322
.......	chr3:41277995-41278299(+)$1	1	223	230	13.2580
))....(	chr2:182766396-182766708(+)$1	1	84	91	13.6612
(((((((	chr2:198288432-198288643(-)$1	1	141	148	17.2096
...))))	chr2:11337234-11337569(-)$1	1	20	27	13.0161
((((((.	chr4:166414226-166414521(+)$1	1	77	84	17.2096
.......	chr17:62500021-62500306(-)$1	1	39	46	13.1774
(((....	chr2:99976838-99977107(+)$1	1	8	15	13.3387
..(((.(	chr16:18845608-18845869(-)$1	1	57	64	14.1451
.....((	chr1:24973490-24973785(+)$1	1	7	14	13.1774
.......	chr2:201331951-201332216(+)$1	1	5	12	13.2580
...((((	chr13:107211743-107212035(-)$1	1	5	12	14.1451
....(((	chr20:3545913-3546155(+)$1	1	1	8	12.9354
.......	chr1:171505067-171505307(+)$1	1	22	29	17.2096
..(((((	chr6:144742993-144743206(+)$1	1	9	16	13.6612
((((...	chr7:45932518-45932757(+)$1	1	150	157	13.0967
)))....	chr2:63086213-63086470(+)$1	1	80	87	17.2096
....)))	chr10:33216919-33217151(-)$1	1	188	195	14.1451
.......	chr11:93470116-93470376(-)$1	1	213	220	13.0967
(((....	chr2:168919924-168920180(-)$1	1	38	45	13.3387
.......	chr7:156745067-156745412(+)$1	1	80	87	13.3387
.......	chr2:236706299-236706572(+)$1	1	78	85	13.6612
).)))))	chr4:186231765-186232069(+)$1	1	223	230	14.1451
))....)	chr4:73967992-73968204(-)$1	1	112	119	12.9354
))).(((	chr1:226349146-226349443(-)$1	1	218	225	13.0161
.))))))	chr2:128937258-128937520(+)$1	1	238	245	13.0967
(.(((((	chr3:37388583-37388801(+)$1	1	16	23	14.1451
..(((((	chr9:114133928-114134168(-)$1	1	36	43	14.1451
(((((((	chr20:61538582-61538815(-)$1	1	28	35	13.3387
))).)))	chr2:153467938-153468210(+)$1	1	223	230	13.0161
.....((	chr9:131360577-131360813(+)$1	1	62	69	12.8548
.....))	chr21:38510860-38511107(+)$1	1	213	220	17.2096

#PSSM
U : 0.79	u : 0.09	A : 0.06	G : 0.03	C : 0.01	
U : 0.75	u : 0.08	C : 0.06	G : 0.04	A : 0.03	g : 0.01	
A : 0.69	G : 0.14	a : 0.08	C : 0.06	g : 0.01	
U : 0.90	u : 0.09	
U : 0.87	u : 0.09	G : 0.03	
U : 0.83	u : 0.08	A : 0.06	a : 0.01	
U : 0.77	u : 0.08	C : 0.06	A : 0.06	c : 0.01	

#score	888.2903225806446
#seq	62
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_CDS_m2_run2.nuc.txt

#NT
AGAAG	chr1:203767365-203767617(+)$1	252	152	157	14.9999
AGAAG	chr8:94745827-94746057(-)$1	230	56	61	14.9999
AGAAG	chr7:94539867-94540095(+)$1	228	219	224	14.9999
AGAAG	chr10:13541759-13542064(-)$1	305	25	30	14.9999
AGAAG	chr3:123663627-123663924(-)$1	297	203	208	14.9999
AGAAG	chr3:99569184-99569466(-)$1	282	236	241	14.9999
agaag	chr16:72992397-72992650(-)$1	253	36	41	14.9999
AGAAG	chr12:6692168-6692376(-)$1	208	179	184	14.9999
AGAAG	chr6:7581158-7581380(+)$1	222	19	24	14.9999
AGAAG	chr1:35656856-35657126(-)$1	270	139	144	14.9999
AGAAG	chr17:37618167-37618456(+)$1	289	185	190	14.9999
AGAAG	chr3:37368445-37368692(+)$1	247	94	99	14.9999
AGAAG	chr8:94746867-94747105(-)$1	238	131	136	14.9999
agaag	chr3:51440562-51440831(-)$1	269	22	27	14.9999
AGAAG	chr5:79733379-79733625(+)$1	246	6	11	14.9999
AGAAG	chr3:121411282-121411518(-)$1	236	149	154	14.9999
AGAAG	chr9:131347937-131348230(+)$1	293	251	256	14.9999
AGAAG	chr9:32543278-32543543(-)$1	265	166	171	14.9999
AGAAG	chr8:124266061-124266304(-)$1	243	40	45	14.9999
AGAAG	chr10:38406545-38406779(+)$1	234	210	215	14.9999
AGAAG	chr17:78269408-78269670(+)$1	262	103	108	14.9999
AGAAG	chr2:152330377-152330590(+)$1	213	117	122	14.9999
AGAAG	chr8:94747638-94747883(-)$1	245	64	69	14.9999
AGAAG	chr16:70697736-70697946(-)$1	210	149	154	14.9999
AGAAG	chr4:57797201-57797497(+)$1	296	44	49	14.9999
AGAAG	chr4:151773188-151773467(-)$1	279	76	81	14.9999
AGAAG	chr6:4031949-4032202(+)$1	253	119	124	14.9999
AGAAG	chr19:1219271-1219512(+)$1	241	110	115	14.9999
AGAAG	chr20:31024532-31024844(+)$1	312	91	96	14.9999
AGAAG	chr7:132990659-132990912(+)$1	253	50	55	14.9999
AGAAG	chrX:76938901-76939128(-)$1	227	42	47	14.9999
AGAAG	chr1:19449226-19449447(-)$1	221	26	31	14.9999
AGAAG	chr2:198266377-198266612(-)$1	235	77	82	14.9999
AGAAG	chr3:37366584-37366865(+)$1	281	53	58	14.9999
AGAAG	chr12:72057140-72057410(-)$1	270	73	78	14.9999
AGAAG	chr14:21836439-21836691(-)$1	252	196	201	14.9999
AGAAG	chr6:87969530-87969812(+)$1	282	100	105	14.9999
AGAAG	chr16:4910605-4910906(+)$1	301	85	90	14.9999
AGAAG	chr17:42475787-42476034(-)$1	247	65	70	14.9999
AGAAG	chr22:42606193-42606468(-)$1	275	118	123	14.9999
AGAAG	chr5:140032542-140032830(+)$1	288	72	77	14.9999
AGAAG	chr17:40872297-40872571(-)$1	274	234	239	14.9999
AGAAG	chr16:18861541-18861831(-)$1	290	86	91	14.9999
AGAAG	chr11:62287150-62287410(-)$1	260	164	169	14.9999
AGAAG	chr10:98743067-98743366(+)$1	299	16	21	14.9999
AGAAG	chr20:40127834-40128065(-)$1	231	76	81	14.9999
AGAAG	chr15:93485040-93485287(+)$1	247	17	22	14.9999
AGAAG	chr5:70798329-70798601(+)$1	272	40	45	14.9999
AGAAG	chr11:47767796-47768010(-)$1	214	107	112	14.9999
AGAAG	chr6:56401584-56401835(-)$1	251	108	113	14.9999
AGAAG	chr13:31232822-31233061(+)$1	239	90	95	14.9999
AGAAG	chr10:38121054-38121290(-)$1	236	95	100	14.9999
AGAAG	chr3:99568517-99568751(-)$1	234	121	126	14.9999
AGAAG	chr1:39876967-39877268(+)$1	301	27	32	14.9999
AGAAG	chr2:61715287-61715506(-)$1	219	129	134	14.9999
AGAAG	chr10:70332711-70332968(+)$1	257	193	198	14.9999
AGAAG	chr1:155451381-155451637(-)$1	256	46	51	14.9999
AGAAG	chr16:2813505-2813764(+)$1	259	79	84	14.9999
AGAAG	chr1:171510312-171510581(+)$1	269	15	20	14.9999
AGAAG	chr14:64988491-64988788(+)$1	297	69	74	14.9999
AGAAG	chr3:47730775-47730993(-)$1	218	179	184	14.9999
AGAAG	chr5:73930822-73931052(-)$1	230	34	39	14.9999
AGAAG	chr7:91631608-91631847(+)$1	239	19	24	14.9999
AGAAG	chr3:40574156-40574432(+)$1	276	51	56	14.9999
AGAAG	chrX:41007521-41007774(+)$1	253	165	170	14.9999
AGAAG	chr1:16890384-16890647(-)$1	263	81	86	14.9999
AGAAG	chr1:19468040-19468252(-)$1	212	131	136	14.9999
AGAAG	chr6:144820321-144820558(+)$1	237	76	81	14.9999
AGAAG	chr1:12320904-12321209(+)$1	305	234	239	14.9999

#otherMatches

#Struct PSSM
FFFFF	chrY:15029855-15030079(+)$1	224	209	214	14.9999
====e	chr1:203767365-203767617(+)$1	252	152	157	14.9999
[gggg	chr8:94745827-94746057(-)$1	230	56	61	14.9999
YCCCC	chr7:94539867-94540095(+)$1	228	219	224	14.9999
ooooo	chr10:13541759-13542064(-)$1	305	25	30	14.9999
::bb[	chr3:123663627-123663924(-)$1	297	203	208	14.9999
66666	chr3:99569184-99569466(-)$1	282	236	241	14.9999
EEEEE	chr16:72992397-72992650(-)$1	253	36	41	14.9999
c333e	chr12:6692168-6692376(-)$1	208	179	184	14.9999
:::::	chr6:7581158-7581380(+)$1	222	19	24	14.9999
qqqqf	chr1:35656856-35657126(-)$1	270	139	144	14.9999
BBYYF	chr17:37618167-37618456(+)$1	289	185	190	14.9999
%cccq	chr3:37368445-37368692(+)$1	247	94	99	14.9999
LDDDD	chr8:94746867-94747105(-)$1	238	131	136	14.9999
:::::	chr3:51440562-51440831(-)$1	269	22	27	14.9999
::::F	chr5:79733379-79733625(+)$1	246	6	11	14.9999
HHHHH	chr3:121411282-121411518(-)$1	236	149	154	14.9999
e::::	chr9:131347937-131348230(+)$1	293	251	256	14.9999
ddEEE	chr9:32543278-32543543(-)$1	265	166	171	14.9999
:::::	chr8:124266061-124266304(-)$1	243	40	45	14.9999
???CC	chr10:38406545-38406779(+)$1	234	210	215	14.9999
h]bbd	chr17:78269408-78269670(+)$1	262	103	108	14.9999
hhhhh	chr2:152330377-152330590(+)$1	213	117	122	14.9999
tcccb	chr8:94747638-94747883(-)$1	245	64	69	14.9999
:::::	chr16:70697736-70697946(-)$1	210	149	154	14.9999
d4444	chr4:57797201-57797497(+)$1	296	44	49	14.9999
"""cc	chr4:151773188-151773467(-)$1	279	76	81	14.9999
c"""f	chr6:4031949-4032202(+)$1	253	119	124	14.9999
555ii	chr19:1219271-1219512(+)$1	241	110	115	14.9999
eee[g	chr20:31024532-31024844(+)$1	312	91	96	14.9999
G{A:b	chr7:132990659-132990912(+)$1	253	50	55	14.9999
LDDDD	chrX:76938901-76939128(-)$1	227	42	47	14.9999
:::::	chr1:19449226-19449447(-)$1	221	26	31	14.9999
::ccc	chr2:198266377-198266612(-)$1	235	77	82	14.9999
:::FF	chr3:37366584-37366865(+)$1	281	53	58	14.9999
LLLDD	chr12:72057140-72057410(-)$1	270	73	78	14.9999
iiiii	chr14:21836439-21836691(-)$1	252	196	201	14.9999
:dddd	chr6:87969530-87969812(+)$1	282	100	105	14.9999
]dddd	chr16:4910605-4910906(+)$1	301	85	90	14.9999
>>>dd	chr17:42475787-42476034(-)$1	247	65	70	14.9999
4444a	chr22:42606193-42606468(-)$1	275	118	123	14.9999
::::B	chr5:140032542-140032830(+)$1	288	72	77	14.9999
rrrrr	chr17:40872297-40872571(-)$1	274	234	239	14.9999
:::ii	chr16:18861541-18861831(-)$1	290	86	91	14.9999
eee[b	chr11:62287150-62287410(-)$1	260	164	169	14.9999
[bbpp	chr10:98743067-98743366(+)$1	299	16	21	14.9999
DD::g	chr20:40127834-40128065(-)$1	231	76	81	14.9999
#bb[b	chr15:93485040-93485287(+)$1	247	17	22	14.9999
ffff[	chr5:70798329-70798601(+)$1	272	40	45	14.9999
:::::	chr11:47767796-47768010(-)$1	214	107	112	14.9999
:::::	chr6:56401584-56401835(-)$1	251	108	113	14.9999
6dddd	chr13:31232822-31233061(+)$1	239	90	95	14.9999
neeee	chr10:38121054-38121290(-)$1	236	95	100	14.9999
"""cc	chr3:99568517-99568751(-)$1	234	121	126	14.9999
cc888	chr1:39876967-39877268(+)$1	301	27	32	14.9999
ZEEEE	chr2:61715287-61715506(-)$1	219	129	134	14.9999
nccc2	chr10:70332711-70332968(+)$1	257	193	198	14.9999
nnnnd	chr1:155451381-155451637(-)$1	256	46	51	14.9999
eeedd	chr16:2813505-2813764(+)$1	259	79	84	14.9999
:::::	chr1:171510312-171510581(+)$1	269	15	20	14.9999
lllee	chr14:64988491-64988788(+)$1	297	69	74	14.9999
ooooo	chr3:47730775-47730993(-)$1	218	179	184	14.9999
HHH:f	chr5:73930822-73931052(-)$1	230	34	39	14.9999
:::::	chr7:91631608-91631847(+)$1	239	19	24	14.9999
2dddd	chr3:40574156-40574432(+)$1	276	51	56	14.9999
mmhhh	chrX:41007521-41007774(+)$1	253	165	170	14.9999
$eeee	chr1:16890384-16890647(-)$1	263	81	86	14.9999
cceee	chr1:19468040-19468252(-)$1	212	131	136	14.9999
]bb]c	chr6:144820321-144820558(+)$1	237	76	81	14.9999
f22gg	chr1:12320904-12321209(+)$1	305	234	239	14.9999

#DB
)))))	chrY:15029855-15030079(+)$1	1	209	214	14.9999
))))(	chr1:203767365-203767617(+)$1	1	152	157	14.9999
.((((	chr8:94745827-94746057(-)$1	1	56	61	14.9999
.))))	chr7:94539867-94540095(+)$1	1	219	224	14.9999
.....	chr10:13541759-13542064(-)$1	1	25	30	14.9999
..((.	chr3:123663627-123663924(-)$1	1	203	208	14.9999
.....	chr3:99569184-99569466(-)$1	1	236	241	14.9999
(((((	chr16:72992397-72992650(-)$1	1	36	41	14.9999
)...)	chr12:6692168-6692376(-)$1	1	179	184	14.9999
.....	chr6:7581158-7581380(+)$1	1	19	24	14.9999
....)	chr1:35656856-35657126(-)$1	1	139	144	14.9999
))..)	chr17:37618167-37618456(+)$1	1	185	190	14.9999
.(((.	chr3:37368445-37368692(+)$1	1	94	99	14.9999
.((((	chr8:94746867-94747105(-)$1	1	131	136	14.9999
.....	chr3:51440562-51440831(-)$1	1	22	27	14.9999
....(	chr5:79733379-79733625(+)$1	1	6	11	14.9999
)))))	chr3:121411282-121411518(-)$1	1	149	154	14.9999
)....	chr9:131347937-131348230(+)$1	1	251	256	14.9999
)))))	chr9:32543278-32543543(-)$1	1	166	171	14.9999
.....	chr8:124266061-124266304(-)$1	1	40	45	14.9999
...))	chr10:38406545-38406779(+)$1	1	210	215	14.9999
).))(	chr17:78269408-78269670(+)$1	1	103	108	14.9999
)))))	chr2:152330377-152330590(+)$1	1	117	122	14.9999
.))))	chr8:94747638-94747883(-)$1	1	64	69	14.9999
.....	chr16:70697736-70697946(-)$1	1	149	154	14.9999
)....	chr4:57797201-57797497(+)$1	1	44	49	14.9999
...((	chr4:151773188-151773467(-)$1	1	76	81	14.9999
(...(	chr6:4031949-4032202(+)$1	1	119	124	14.9999
...))	chr19:1219271-1219512(+)$1	1	110	115	14.9999
(((.(	chr20:31024532-31024844(+)$1	1	91	96	14.9999
(.(.(	chr7:132990659-132990912(+)$1	1	50	55	14.9999
.((((	chrX:76938901-76939128(-)$1	1	42	47	14.9999
.....	chr1:19449226-19449447(-)$1	1	26	31	14.9999
..(((	chr2:198266377-198266612(-)$1	1	77	82	14.9999
...((	chr3:37366584-37366865(+)$1	1	53	58	14.9999
...((	chr12:72057140-72057410(-)$1	1	73	78	14.9999
(((((	chr14:21836439-21836691(-)$1	1	196	201	14.9999
.((((	chr6:87969530-87969812(+)$1	1	100	105	14.9999
.))))	chr16:4910605-4910906(+)$1	1	85	90	14.9999
...))	chr17:42475787-42476034(-)$1	1	65	70	14.9999
....)	chr22:42606193-42606468(-)$1	1	118	123	14.9999
....(	chr5:140032542-140032830(+)$1	1	72	77	14.9999
.....	chr17:40872297-40872571(-)$1	1	234	239	14.9999
...((	chr16:18861541-18861831(-)$1	1	86	91	14.9999
(((.(	chr11:62287150-62287410(-)$1	1	164	169	14.9999
.((..	chr10:98743067-98743366(+)$1	1	16	21	14.9999
((..(	chr20:40127834-40128065(-)$1	1	76	81	14.9999
.((.(	chr15:93485040-93485287(+)$1	1	17	22	14.9999
((((.	chr5:70798329-70798601(+)$1	1	40	45	14.9999
.....	chr11:47767796-47768010(-)$1	1	107	112	14.9999
.....	chr6:56401584-56401835(-)$1	1	108	113	14.9999
.))))	chr13:31232822-31233061(+)$1	1	90	95	14.9999
.))))	chr10:38121054-38121290(-)$1	1	95	100	14.9999
...((	chr3:99568517-99568751(-)$1	1	121	126	14.9999
))...	chr1:39876967-39877268(+)$1	1	27	32	14.9999
.))))	chr2:61715287-61715506(-)$1	1	129	134	14.9999
.))).	chr10:70332711-70332968(+)$1	1	193	198	14.9999
....)	chr1:155451381-155451637(-)$1	1	46	51	14.9999
)))((	chr16:2813505-2813764(+)$1	1	79	84	14.9999
.....	chr1:171510312-171510581(+)$1	1	15	20	14.9999
...))	chr14:64988491-64988788(+)$1	1	69	74	14.9999
.....	chr3:47730775-47730993(-)$1	1	179	184	14.9999
(((.(	chr5:73930822-73931052(-)$1	1	34	39	14.9999
.....	chr7:91631608-91631847(+)$1	1	19	24	14.9999
.))))	chr3:40574156-40574432(+)$1	1	51	56	14.9999
..)))	chrX:41007521-41007774(+)$1	1	165	170	14.9999
.((((	chr1:16890384-16890647(-)$1	1	81	86	14.9999
(((((	chr1:19468040-19468252(-)$1	1	131	136	14.9999
.)).)	chr6:144820321-144820558(+)$1	1	76	81	14.9999
)..))	chr1:12320904-12321209(+)$1	1	234	239	14.9999

#PSSM
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	

#score	1049.9999999999995
#seq	70
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_UTR_m3_run1.nuc.txt

#NT
GCUCCU	chr22:50018397-50018654(-)$1	257	56	62	16.9285
GCUCCU	chr17:27050622-27050848(+)$1	226	0	6	16.9285
GCUGCU	chr4:78740390-78740673(-)$1	283	180	186	14.0714
GCUCCU	chr22:21983344-21983575(-)$1	231	71	77	16.9285
gcuccu	chr17:8076746-8076968(-)$1	222	184	190	16.9285
gcuccu	chr17:8076726-8076943(-)$1	217	159	165	16.9285
GCUCCU	chr19:4037882-4038140(+)$1	258	124	130	16.9285
GCUCCU	chr1:32827795-32828062(-)$1	267	145	151	16.9285
gcuccu	chr17:8076657-8076872(-)$1	215	88	94	16.9285
GCUCCU	chr22:20068093-20068356(+)$1	263	65	71	16.9285
gcuccu	chr17:8076672-8076904(-)$1	232	120	126	16.9285
gcugcu	chr12:123998577-123998824(-)$1	247	130	136	14.0714
GCUCCU	chr11:290512-290764(+)$1	252	13	19	16.9285
GCUGCU	chr19:59056282-59056528(+)$1	246	21	27	14.0714
GCUGCU	chr12:123997699-123998012(-)$1	313	7	13	14.0714
GCUCCU	chr12:123997923-123998181(-)$1	258	143	149	16.9285
GCUCCU	chr2:97525789-97526033(-)$1	244	237	243	16.9285
GCUCCU	chr19:2425991-2426267(-)$1	276	132	138	16.9285
GCUCCU	chr17:80231340-80231633(-)$1	293	74	80	16.9285
GCUGCU	chr3:184079460-184079790(+)$1	330	17	23	14.0714
GCUCCU	chr19:13250242-13250501(+)$1	259	142	148	16.9285
GCUGCU	chr17:75212398-75212677(+)$1	279	145	151	14.0714
GCUCCU	chr11:5275532-5275800(-)$1	268	56	62	16.9285
gcuccu	chr17:8076704-8076926(-)$1	222	142	148	16.9285
GCUCCU	chr16:89367059-89367310(-)$1	251	242	248	16.9285
gcuccu	chr17:8076768-8077003(-)$1	235	219	225	16.9285
GCUCCU	chr19:54971699-54971951(+)$1	252	0	6	16.9285

#otherMatches

#Struct PSSM
======	chr6:7107966-7108225(+)$1	259	134	140	16.9285
dddbb]	chr22:50018397-50018654(-)$1	257	56	62	16.9285
::::::	chr17:27050622-27050848(+)$1	226	0	6	16.9285
ccc[bb	chr4:78740390-78740673(-)$1	283	180	186	14.0714
}DDDD:	chr22:21983344-21983575(-)$1	231	71	77	16.9285
:DDDD}	chr17:8076746-8076968(-)$1	222	184	190	16.9285
:DDDD}	chr17:8076726-8076943(-)$1	217	159	165	16.9285
g333ee	chr19:4037882-4038140(+)$1	258	124	130	16.9285
2eeeee	chr1:32827795-32828062(-)$1	267	145	151	16.9285
:DDDDd	chr17:8076657-8076872(-)$1	215	88	94	16.9285
cc[eee	chr22:20068093-20068356(+)$1	263	65	71	16.9285
:DDDD}	chr17:8076672-8076904(-)$1	232	120	126	16.9285
GGGBBY	chr12:123998577-123998824(-)$1	247	130	136	14.0714
FFF:::	chr11:290512-290764(+)$1	252	13	19	16.9285
CCCEEE	chr19:59056282-59056528(+)$1	246	21	27	14.0714
cc[fff	chr12:123997699-123998012(-)$1	313	7	13	14.0714
c:dddd	chr12:123997923-123998181(-)$1	258	143	149	16.9285
hhdddd	chr2:97525789-97526033(-)$1	244	237	243	16.9285
dddd##	chr19:2425991-2426267(-)$1	276	132	138	16.9285
bbgggg	chr17:80231340-80231633(-)$1	293	74	80	16.9285
CCC{DD	chr3:184079460-184079790(+)$1	330	17	23	14.0714
}FFFFF	chr19:13250242-13250501(+)$1	259	142	148	16.9285
hhhhhh	chr17:75212398-75212677(+)$1	279	145	151	14.0714
ddd"""	chr11:5275532-5275800(-)$1	268	56	62	16.9285
:DDDD}	chr17:8076704-8076926(-)$1	222	142	148	16.9285
cc]bb:	chr16:89367059-89367310(-)$1	251	242	248	16.9285
iiFFFF	chr17:8076768-8077003(-)$1	235	219	225	16.9285
CCC:::	chr19:54971699-54971951(+)$1	252	0	6	16.9285

#DB
))))))	chr6:7107966-7108225(+)$1	1	134	140	16.9285
))))).	chr22:50018397-50018654(-)$1	1	56	62	16.9285
......	chr17:27050622-27050848(+)$1	1	0	6	16.9285
(((.((	chr4:78740390-78740673(-)$1	1	180	186	14.0714
.)))).	chr22:21983344-21983575(-)$1	1	71	77	16.9285
.)))).	chr17:8076746-8076968(-)$1	1	184	190	16.9285
.)))).	chr17:8076726-8076943(-)$1	1	159	165	16.9285
)...))	chr19:4037882-4038140(+)$1	1	124	130	16.9285
.)))))	chr1:32827795-32828062(-)$1	1	145	151	16.9285
.))))(	chr17:8076657-8076872(-)$1	1	88	94	16.9285
((.(((	chr22:20068093-20068356(+)$1	1	65	71	16.9285
.)))).	chr17:8076672-8076904(-)$1	1	120	126	16.9285
))))).	chr12:123998577-123998824(-)$1	1	130	136	14.0714
(((...	chr11:290512-290764(+)$1	1	13	19	16.9285
((((((	chr19:59056282-59056528(+)$1	1	21	27	14.0714
((.(((	chr12:123997699-123998012(-)$1	1	7	13	14.0714
).((((	chr12:123997923-123998181(-)$1	1	143	149	16.9285
))))))	chr2:97525789-97526033(-)$1	1	237	243	16.9285
((((..	chr19:2425991-2426267(-)$1	1	132	138	16.9285
))))))	chr17:80231340-80231633(-)$1	1	74	80	16.9285
(((.((	chr3:184079460-184079790(+)$1	1	17	23	14.0714
.)))))	chr19:13250242-13250501(+)$1	1	142	148	16.9285
))))))	chr17:75212398-75212677(+)$1	1	145	151	14.0714
(((...	chr11:5275532-5275800(-)$1	1	56	62	16.9285
.)))).	chr17:8076704-8076926(-)$1	1	142	148	16.9285
)).)).	chr16:89367059-89367310(-)$1	1	242	248	16.9285
))))))	chr17:8076768-8077003(-)$1	1	219	225	16.9285
(((...	chr19:54971699-54971951(+)$1	1	0	6	16.9285

#PSSM
G : 0.74	g : 0.24	
C : 0.74	c : 0.24	
U : 0.74	u : 0.24	
C : 0.57	c : 0.21	G : 0.17	g : 0.03	
C : 0.74	c : 0.24	
U : 0.74	u : 0.24	

#score	456.85714285714283
#seq	28
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_transcript_m1_run1.nuc.txt

#NT
GGAGGCGG	chr3:38206938-38207266(+)$1	328	5	13	16.2142
GGGGGUGG	chr5:133511983-133512247(-)$1	264	74	82	16.4999
GGGGGCGG	chr12:121341377-121341623(-)$1	246	126	134	20.4285
GGGGGAGG	chr6:7109323-7109541(+)$1	218	140	148	16.7857
GGGGGCGG	chr9:139565254-139565519(+)$1	265	25	33	20.4285
GGGGGAGG	chr5:139028189-139028410(+)$1	221	24	32	16.7857
GGGAGCGG	chr6:47445625-47445887(+)$1	262	47	55	16.0000
gggggcgg	chr10:33246738-33247039(-)$1	301	87	95	20.4285
GGGGGUGG	chr9:96938445-96938696(+)$1	251	35	43	16.4999
GGGGGCGG	chr19:18548039-18548290(-)$1	251	107	115	20.4285
GGGGGAGG	chr20:62272061-62272375(-)$1	314	143	151	16.7857
gggggcgg	chr19:55628763-55629005(-)$1	242	126	134	20.4285
GGGGGCUG	chr7:150935355-150935607(+)$1	252	12	20	16.2857
GGGAGCGG	chr17:76124461-76124685(-)$1	224	169	177	16.0000
GCGGGCGG	chr3:25705906-25706183(-)$1	277	86	94	16.0000
GGGGGAGG	chr12:49523203-49523477(-)$1	274	95	103	16.7857
gcgggcgg	chr10:23003129-23003443(-)$1	314	15	23	16.0000
GGGGGCUG	chr16:74640526-74640806(-)$1	280	125	133	16.2857
GGGGGCUG	chr14:35025454-35025684(-)$1	230	3	11	16.2857
ggggccgg	chrX:20284634-20284880(-)$1	246	67	75	15.8571
GGCGGCGG	chr2:71221729-71222057(-)$1	328	34	42	16.0714
GGAGGCGG	chr4:177241073-177241416(+)$1	343	19	27	16.2142
GGGGGCGG	chr8:101963073-101963393(-)$1	320	249	257	20.4285
CGGGGCGG	chr11:66384203-66384453(+)$1	250	14	22	16.4999
GGGGGCGG	chr8:30584987-30585239(-)$1	252	97	105	20.4285
CGGGGCGG	chr19:55918896-55919153(-)$1	257	17	25	16.4999
gggggugg	chr19:50985397-50985679(+)$1	282	77	85	16.4999
ggggccgg	chr3:183353790-183354104(+)$1	314	128	136	15.8571
gggggcag	chr22:20119545-20119825(+)$1	280	94	102	16.0000
gggggagg	chr17:7232355-7232613(-)$1	258	15	23	16.7857
gggggcgg	chr7:92077036-92077363(+)$1	327	144	152	20.4285
GGGGGCGG	chr1:167522826-167523089(-)$1	263	30	38	20.4285
ggaggcgg	chr17:46985875-46986154(+)$1	279	10	18	16.2142
GAGGGCGG	chr1:36788431-36788694(+)$1	263	35	43	15.9285
GGGGUCGG	chr16:1429134-1429410(-)$1	276	42	50	15.8571
cggggcgg	chrX:153714775-153715009(-)$1	234	16	24	16.4999
GAGGGCGG	chr6:44214752-44214979(+)$1	227	28	36	15.9285
CGGGGCGg	chr17:77813009-77813291(-)$1	282	81	89	16.4999
GGGGGCGG	chr8:74884211-74884476(-)$1	265	95	103	20.4285
GGGGGGGG	chr16:85647248-85647461(+)$1	213	21	29	16.4285
GGGUGCGG	chr4:113066611-113066906(+)$1	295	22	30	15.9285
gggagcgg	chr3:14989344-14989585(-)$1	241	5	13	16.0000
GGGGGCGG	chr7:1491929-1492174(-)$1	245	98	106	20.4285
GGGGGGGG	chr19:6459445-6459804(-)$1	359	89	97	16.4285
GGGGGCGA	chr7:99698805-99699077(-)$1	272	38	46	15.6428
GGGGUCGG	chr3:179040795-179041175(+)$1	380	127	135	15.8571
gggggagg	chr17:56408707-56408982(-)$1	275	113	121	16.7857
gggggcgg	chr1:896183-896459(+)$1	276	22	30	20.4285
CGGGGCGG	chr17:41150664-41150944(+)$1	280	239	247	16.4999
GGGGGCCG	chr3:13035170-13035398(-)$1	228	118	126	16.0000
CGGGGCGG	chr16:85685068-85685309(+)$1	241	84	92	16.4999
GGGGGAGG	chr1:245026454-245026706(-)$1	252	72	80	16.7857
gggggcgg	chr18:9137326-9137603(+)$1	277	155	163	20.4285
cggggcgg	chr20:57466345-57466609(+)$1	264	71	79	16.4999
GGGUGCGG	chr9:139622301-139622617(-)$1	316	125	133	15.9285
GGGGGCGG	chr1:213031653-213031961(+)$1	308	164	172	20.4285
GGCGGCGG	chr7:56119399-56119688(+)$1	289	7	15	16.0714
gggggcug	chr11:129871819-129872061(-)$1	242	6	14	16.2857
AGGGGCGG	chr16:2563871-2564118(+)$1	247	36	44	16.0714
gggggcgg	chr9:91003830-91004078(+)$1	248	85	93	20.4285
gggggcgu	chr16:9185582-9185870(+)$1	288	16	24	15.6428
GGAGGCGG	chr9:140135670-140135923(+)$1	253	21	29	16.2142
GGUGGCGG	chr2:99225027-99225335(+)$1	308	84	92	15.9999
GGGGGCGG	chr4:38666065-38666350(+)$1	285	199	207	20.4285
GGGGGCGG	chr10:106014819-106015050(+)$1	231	32	40	20.4285
gcgggcgg	chr9:131790306-131790651(-)$1	345	71	79	16.0000
GGGGGCUG	chr18:19192210-19192485(+)$1	275	218	226	16.2857
GGGGGCGG	chr8:146017420-146017626(-)$1	206	24	32	20.4285
GGGGGCGG	chr12:7037369-7037628(+)$1	259	87	95	20.4285

#otherMatches

#Struct PSSM
neeeeeee	chr1:155242898-155243255(-)$1	357	41	49	20.4285
EE:bbbb[	chr3:38206938-38207266(+)$1	328	5	13	16.2142
ddd4444h	chr5:133511983-133512247(-)$1	264	74	82	16.4999
YCCC}BBH	chr12:121341377-121341623(-)$1	246	126	134	20.4285
b[ccc[ff	chr6:7109323-7109541(+)$1	218	140	148	16.7857
GGGKKAgg	chr9:139565254-139565519(+)$1	265	25	33	20.4285
iiiiiiii	chr5:139028189-139028410(+)$1	221	24	32	16.7857
bboooooo	chr6:47445625-47445887(+)$1	262	47	55	16.0000
cc]ccc:H	chr10:33246738-33247039(-)$1	301	87	95	20.4285
pppddddb	chr9:96938445-96938696(+)$1	251	35	43	16.4999
nnnneeee	chr19:18548039-18548290(-)$1	251	107	115	20.4285
CCZZZFFF	chr20:62272061-62272375(-)$1	314	143	151	16.7857
ff]bba[b	chr19:55628763-55629005(-)$1	242	126	134	20.4285
mmmbb22g	chr7:150935355-150935607(+)$1	252	12	20	16.2857
FFFFFFYY	chr17:76124461-76124685(-)$1	224	169	177	16.0000
c!!eeeee	chr3:25705906-25706183(-)$1	277	86	94	16.0000
========	chr12:49523203-49523477(-)$1	274	95	103	16.7857
ccc[bb%%	chr10:23003129-23003443(-)$1	314	15	23	16.0000
dd22bb]e	chr16:74640526-74640806(-)$1	280	125	133	16.2857
EEEEE{CC	chr14:35025454-35025684(-)$1	230	3	11	16.2857
b22dddd]	chrX:20284634-20284880(-)$1	246	67	75	15.8571
eee=====	chr2:71221729-71222057(-)$1	328	34	42	16.0714
HHHHHHHH	chr4:177241073-177241416(+)$1	343	19	27	16.2142
##hhhhhh	chr8:101963073-101963393(-)$1	320	249	257	20.4285
eeeeebbm	chr11:66384203-66384453(+)$1	250	14	22	16.4999
ffffffcc	chr8:30584987-30585239(-)$1	252	97	105	20.4285
iiiiiiii	chr19:55918896-55919153(-)$1	257	17	25	16.4999
FFKKFFFF	chr19:50985397-50985679(+)$1	282	77	85	16.4999
HHYYFFFF	chr3:183353790-183354104(+)$1	314	128	136	15.8571
bEEEEE{B	chr22:20119545-20119825(+)$1	280	94	102	16.0000
[a!!a[hh	chr17:7232355-7232613(-)$1	258	15	23	16.7857
II}CCCcc	chr7:92077036-92077363(+)$1	327	144	152	20.4285
bb[fffff	chr1:167522826-167523089(-)$1	263	30	38	20.4285
E{BBEEEE	chr17:46985875-46986154(+)$1	279	10	18	16.2142
a22eeeee	chr1:36788431-36788694(+)$1	263	35	43	15.9285
ff:::::B	chr16:1429134-1429410(-)$1	276	42	50	15.8571
aooooooa	chrX:153714775-153715009(-)$1	234	16	24	16.4999
gggggg[e	chr6:44214752-44214979(+)$1	227	28	36	15.9285
ddd22bb]	chr17:77813009-77813291(-)$1	282	81	89	16.4999
fggggggg	chr8:74884211-74884476(-)$1	265	95	103	20.4285
{A{HHHHH	chr16:85647248-85647461(+)$1	213	21	29	16.4285
fff]bb]a	chr4:113066611-113066906(+)$1	295	22	30	15.9285
cccnnnnn	chr3:14989344-14989585(-)$1	241	5	13	16.0000
EEECCC}E	chr7:1491929-1492174(-)$1	245	98	106	20.4285
JJJJJJJJ	chr19:6459445-6459804(-)$1	359	89	97	16.4285
e[dddd%%	chr7:99698805-99699077(-)$1	272	38	46	15.6428
&&&&gggg	chr3:179040795-179041175(+)$1	380	127	135	15.8571
eeebb[bb	chr17:56408707-56408982(-)$1	275	113	121	16.7857
HHH{DDDD	chr1:896183-896459(+)$1	276	22	30	20.4285
BYYDDDDi	chr17:41150664-41150944(+)$1	280	239	247	16.4999
cc]eeeee	chr3:13035170-13035398(-)$1	228	118	126	16.0000
]eeeeecc	chr16:85685068-85685309(+)$1	241	84	92	16.4999
:BB{JJJJ	chr1:245026454-245026706(-)$1	252	72	80	16.7857
eedddd[c	chr18:9137326-9137603(+)$1	277	155	163	20.4285
2dddd]bb	chr20:57466345-57466609(+)$1	264	71	79	16.4999
ddd]gggg	chr9:139622301-139622617(-)$1	316	125	133	15.9285
a22ccc]c	chr1:213031653-213031961(+)$1	308	164	172	20.4285
A{EEEEE{	chr7:56119399-56119688(+)$1	289	7	15	16.0714
ddbb[bb[	chr11:129871819-129872061(-)$1	242	6	14	16.2857
[ggggggg	chr16:2563871-2564118(+)$1	247	36	44	16.0714
oooa]ccc	chr9:91003830-91004078(+)$1	248	85	93	20.4285
IIIIIIII	chr16:9185582-9185870(+)$1	288	16	24	15.6428
dddfffff	chr9:140135670-140135923(+)$1	253	21	29	16.2142
ccc[eeee	chr2:99225027-99225335(+)$1	308	84	92	15.9999
IIIIIIII	chr4:38666065-38666350(+)$1	285	199	207	20.4285
========	chr10:106014819-106015050(+)$1	231	32	40	20.4285
]eeeee]c	chr9:131790306-131790651(-)$1	345	71	79	16.0000
JJJJJJJ}	chr18:19192210-19192485(+)$1	275	218	226	16.2857
gmmmmggg	chr8:146017420-146017626(-)$1	206	24	32	20.4285
iiiiiiii	chr12:7037369-7037628(+)$1	259	87	95	20.4285

#DB
.)))))((	chr1:155242898-155243255(-)$1	1	41	49	20.4285
((.((((.	chr3:38206938-38207266(+)$1	1	5	13	16.2142
)))....)	chr5:133511983-133512247(-)$1	1	74	82	16.4999
.))).)))	chr12:121341377-121341623(-)$1	1	126	134	20.4285
(.(((.((	chr6:7109323-7109541(+)$1	1	140	148	16.7857
(((..(((	chr9:139565254-139565519(+)$1	1	25	33	20.4285
((((((((	chr5:139028189-139028410(+)$1	1	24	32	16.7857
((......	chr6:47445625-47445887(+)$1	1	47	55	16.0000
)).))).(	chr10:33246738-33247039(-)$1	1	87	95	20.4285
...))))(	chr9:96938445-96938696(+)$1	1	35	43	16.4999
....))))	chr19:18548039-18548290(-)$1	1	107	115	20.4285
))...)))	chr20:62272061-62272375(-)$1	1	143	151	16.7857
)).))(.(	chr19:55628763-55629005(-)$1	1	126	134	20.4285
...))..)	chr7:150935355-150935607(+)$1	1	12	20	16.2857
))))))..	chr17:76124461-76124685(-)$1	1	169	177	16.0000
(..(((((	chr3:25705906-25706183(-)$1	1	86	94	16.0000
((((((((	chr12:49523203-49523477(-)$1	1	95	103	16.7857
(((.((..	chr10:23003129-23003443(-)$1	1	15	23	16.0000
))..)).)	chr16:74640526-74640806(-)$1	1	125	133	16.2857
(((((.((	chr14:35025454-35025684(-)$1	1	3	11	16.2857
)..)))).	chrX:20284634-20284880(-)$1	1	67	75	15.8571
((((((((	chr2:71221729-71222057(-)$1	1	34	42	16.0714
((((((((	chr4:177241073-177241416(+)$1	1	19	27	16.2142
..((((((	chr8:101963073-101963393(-)$1	1	249	257	20.4285
(((((((.	chr11:66384203-66384453(+)$1	1	14	22	16.4999
))))))))	chr8:30584987-30585239(-)$1	1	97	105	20.4285
((((((((	chr19:55918896-55919153(-)$1	1	17	25	16.4999
((..((((	chr19:50985397-50985679(+)$1	1	77	85	16.4999
))..))))	chr3:183353790-183354104(+)$1	1	128	136	15.8571
)(((((.(	chr22:20119545-20119825(+)$1	1	94	102	16.0000
.(..(.((	chr17:7232355-7232613(-)$1	1	15	23	16.7857
)).)))((	chr7:92077036-92077363(+)$1	1	144	152	20.4285
((.(((((	chr1:167522826-167523089(-)$1	1	30	38	20.4285
(.((((((	chr17:46985875-46986154(+)$1	1	10	18	16.2142
)..)))))	chr1:36788431-36788694(+)$1	1	35	43	15.9285
)).....(	chr16:1429134-1429410(-)$1	1	42	50	15.8571
(......)	chrX:153714775-153715009(-)$1	1	16	24	16.4999
((((((.(	chr6:44214752-44214979(+)$1	1	28	36	15.9285
)))..)).	chr17:77813009-77813291(-)$1	1	81	89	16.4999
))))))))	chr8:74884211-74884476(-)$1	1	95	103	20.4285
.(.(((((	chr16:85647248-85647461(+)$1	1	21	29	16.4285
))).)).)	chr4:113066611-113066906(+)$1	1	22	30	15.9285
(((.....	chr3:14989344-14989585(-)$1	1	5	13	16.0000
)))))).)	chr7:1491929-1492174(-)$1	1	98	106	20.4285
((((((((	chr19:6459445-6459804(-)$1	1	89	97	16.4285
(.((((..	chr7:99698805-99699077(-)$1	1	38	46	15.6428
....((((	chr3:179040795-179041175(+)$1	1	127	135	15.8571
(((((.((	chr17:56408707-56408982(-)$1	1	113	121	16.7857
(((.((((	chr1:896183-896459(+)$1	1	22	30	20.4285
)..))))(	chr17:41150664-41150944(+)$1	1	239	247	16.4999
)).)))))	chr3:13035170-13035398(-)$1	1	118	126	16.0000
.)))))((	chr16:85685068-85685309(+)$1	1	84	92	16.4999
.((.((((	chr1:245026454-245026706(-)$1	1	72	80	16.7857
((((((.(	chr18:9137326-9137603(+)$1	1	155	163	20.4285
.)))).))	chr20:57466345-57466609(+)$1	1	71	79	16.4999
))).))))	chr9:139622301-139622617(-)$1	1	125	133	15.9285
)..))).)	chr1:213031653-213031961(+)$1	1	164	172	20.4285
(.(((((.	chr7:56119399-56119688(+)$1	1	7	15	16.0714
((((.((.	chr11:129871819-129872061(-)$1	1	6	14	16.2857
.(((((((	chr16:2563871-2564118(+)$1	1	36	44	16.0714
...).)))	chr9:91003830-91004078(+)$1	1	85	93	20.4285
((((((((	chr16:9185582-9185870(+)$1	1	16	24	15.6428
)))(((((	chr9:140135670-140135923(+)$1	1	21	29	16.2142
(((.((((	chr2:99225027-99225335(+)$1	1	84	92	15.9999
))))))))	chr4:38666065-38666350(+)$1	1	199	207	20.4285
((((((((	chr10:106014819-106015050(+)$1	1	32	40	20.4285
.))))).)	chr9:131790306-131790651(-)$1	1	71	79	16.0000
))))))).	chr18:19192210-19192485(+)$1	1	218	226	16.2857
(....)))	chr8:146017420-146017626(-)$1	1	24	32	20.4285
((((((((	chr12:7037369-7037628(+)$1	1	87	95	20.4285

#PSSM
G : 0.62	g : 0.25	C : 0.07	c : 0.02	A : 0.01	
G : 0.67	g : 0.25	c : 0.02	A : 0.02	C : 0.01	
G : 0.62	g : 0.27	A : 0.04	C : 0.02	a : 0.01	U : 0.01	
G : 0.65	g : 0.27	A : 0.02	U : 0.02	a : 0.01	
G : 0.68	g : 0.25	c : 0.02	U : 0.02	
C : 0.58	c : 0.24	A : 0.07	U : 0.02	a : 0.02	G : 0.02	u : 0.01	
G : 0.64	g : 0.25	U : 0.05	a : 0.01	C : 0.01	u : 0.01	
G : 0.68	g : 0.28	A : 0.01	u : 0.01	

#score	1220.8571428571427
#seq	70
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_transcript_m1_run2.nuc.txt

#NT
ggggugg	chr5:283928-284175(+)$1	247	207	214	14.0158
GUGCUGG	chr12:6619537-6619767(+)$1	230	184	191	13.3809
GUGGAGG	chr12:132478857-132479167(+)$1	310	152	159	13.2222
UUGGUGG	chrY:2716248-2716502(+)$1	254	104	111	13.3015
GAGGUGG	chr19:34883610-34883833(+)$1	223	134	141	14.7301
guggugg	chr20:35192525-35192805(-)$1	280	17	24	17.0317
guggugg	chr11:24568417-24568652(+)$1	235	94	101	17.0317
GUGGUGG	chr9:139996410-139996709(+)$1	299	268	275	17.0317
GAGGUGG	chr19:34882400-34882620(+)$1	220	145	152	14.7301
guggugg	chr7:116601502-116601794(+)$1	292	143	150	17.0317
UUGGUGG	chrY:2716221-2716448(+)$1	227	131	138	13.3015
GAGGUGG	chr19:34874198-34874465(+)$1	267	41	48	14.7301
GAGGUGG	chr19:34883529-34883760(+)$1	231	215	222	14.7301
GGGGUGG	chr5:1069288-1069540(-)$1	252	91	98	14.0158
gugcugg	chr9:21878433-21878679(+)$1	246	190	197	13.3809
UUGGUGG	chr6:32940946-32941203(+)$1	257	67	74	13.3015
cuggugg	chr1:9318057-9318319(+)$1	262	233	240	12.9841
GUGUUGG	chrY:2714650-2714881(+)$1	231	121	128	13.3015
GUGUUGG	chr8:453334-453606(-)$1	272	89	96	13.3015
GUGGAGG	chr17:69982-70240(-)$1	258	21	28	13.2222
UUGGUGG	chr19:57350578-57350844(-)$1	266	257	264	13.3015
GGGGUGG	chr12:11005667-11005964(-)$1	297	25	32	14.0158
GAGGUGG	chr14:23778303-23778565(+)$1	262	121	128	14.7301
UUGGUGG	chr17:29632109-29632459(+)$1	350	100	107	13.3015
ggggugg	chr13:113760940-113761221(+)$1	281	0	7	14.0158
guggugg	chr2:32583032-32583281(+)$1	249	95	102	17.0317
GAGGUGG	chr9:140617122-140617409(+)$1	287	47	54	14.7301
GAGGUGG	chr19:34882638-34882889(+)$1	251	8	15	14.7301
GUGGUGG	chr19:34873815-34874084(+)$1	269	245	252	17.0317
guggugg	chr13:20617726-20618014(+)$1	288	59	66	17.0317
GCGGUGG	chr6:109702902-109703172(-)$1	270	108	115	13.6984
GGGGUGG	chr3:187454542-187454771(-)$1	229	101	108	14.0158
GUGGAGG	chr13:113869269-113869547(+)$1	278	35	42	13.2222
GUGGGGG	chr3:171899874-171900256(+)$1	382	33	40	12.9841
guggugg	chr2:62952478-62952740(+)$1	262	113	120	17.0317
GUGCUGG	chr21:47564609-47564880(-)$1	271	102	109	13.3809
UUGGUGG	chr15:25310857-25311161(+)$1	304	74	81	13.3015
GUGGGGG	chr16:89513043-89513344(-)$1	301	67	74	12.9841
GUGGUGG	chr6:32940631-32940945(+)$1	314	235	242	17.0317
GUGUUGG	chr15:25309306-25309580(+)$1	274	150	157	13.3015
GUGGAGG	chr13:113869985-113870243(+)$1	258	32	39	13.2222
GAGGUGG	chr19:34874288-34874552(+)$1	264	22	29	14.7301
GUGCUGG	chr7:158324767-158324987(-)$1	220	102	109	13.3809
GUGGAGG	chr16:1125548-1125819(-)$1	271	217	224	13.2222
GUGGGGG	chr15:25307669-25307952(+)$1	283	58	65	12.9841
GUGCUGG	chr12:6619582-6619816(+)$1	234	139	146	13.3809
GUGUUGG	chr16:89513438-89513690(-)$1	252	125	132	13.3015
GAGGUGG	chr20:36146112-36146375(-)$1	263	142	149	14.7301
guguUGG	chr11:70504172-70504430(-)$1	258	113	120	13.3015
GUGGUGG	chr16:89511244-89511527(-)$1	283	211	218	17.0317
GUGGAGG	chr16:89381315-89381555(-)$1	240	46	53	13.2222
GAGGUGG	chr19:34874071-34874318(+)$1	247	168	175	14.7301
GAGGUGG	chr19:34883560-34883784(+)$1	224	184	191	14.7301
GAGGUGG	chr10:81458664-81458929(-)$1	265	161	168	14.7301
AUGGUGG	chr19:34878316-34878551(+)$1	235	20	27	12.9841
GUGCUGG	chr21:47564693-47564965(-)$1	272	187	194	13.3809
GAGGUGG	chr7:104752716-104752963(-)$1	247	106	113	14.7301
guggugg	chr6:160133083-160133342(-)$1	259	38	45	17.0317
guggugg	chr14:39835793-39836048(+)$1	255	3	10	17.0317
guggugg	chr11:70633570-70633863(-)$1	293	34	41	17.0317
CUGGUGG	chr7:5391764-5392007(-)$1	243	2	9	12.9841
GAGGUGG	chr19:34882466-34882717(+)$1	251	79	86	14.7301

#otherMatches

#Struct PSSM
FFF{ALL	chr17:44239780-44240090(-)$1	310	58	65	12.9841
ooooooc	chr5:283928-284175(+)$1	247	207	214	14.0158
d[bbnnn	chr12:6619537-6619767(+)$1	230	184	191	13.3809
[bbnnnn	chr12:132478857-132479167(+)$1	310	152	159	13.2222
g[a"""d	chrY:2716248-2716502(+)$1	254	104	111	13.3015
a[bbhhh	chr19:34883610-34883833(+)$1	223	134	141	14.7301
JJJJJJJ	chr20:35192525-35192805(-)$1	280	17	24	17.0317
ggggggb	chr11:24568417-24568652(+)$1	235	94	101	17.0317
dddccc2	chr9:139996410-139996709(+)$1	299	268	275	17.0317
GGGGG}A	chr19:34882400-34882620(+)$1	220	145	152	14.7301
^^^eeee	chr7:116601502-116601794(+)$1	292	143	150	17.0317
cc$$$$$	chrY:2716221-2716448(+)$1	227	131	138	13.3015
c"""ggg	chr19:34874198-34874465(+)$1	267	41	48	14.7301
44a]ddd	chr19:34883529-34883760(+)$1	231	215	222	14.7301
!gggggg	chr5:1069288-1069540(-)$1	252	91	98	14.0158
hhfffff	chr9:21878433-21878679(+)$1	246	190	197	13.3809
GG{BB{A	chr6:32940946-32941203(+)$1	257	67	74	13.3015
iiiiiio	chr1:9318057-9318319(+)$1	262	233	240	12.9841
!a[ccce	chrY:2714650-2714881(+)$1	231	121	128	13.3015
ffffccc	chr8:453334-453606(-)$1	272	89	96	13.3015
:::IIII	chr17:69982-70240(-)$1	258	21	28	13.2222
BBCCC}B	chr19:57350578-57350844(-)$1	266	257	264	13.3015
!!ddddm	chr12:11005667-11005964(-)$1	297	25	32	14.0158
dddddcc	chr14:23778303-23778565(+)$1	262	121	128	14.7301
mmmbb]c	chr17:29632109-29632459(+)$1	350	100	107	13.3015
:::CCC:	chr13:113760940-113761221(+)$1	281	0	7	14.0158
FFKKA{B	chr2:32583032-32583281(+)$1	249	95	102	17.0317
ee$$$$$	chr9:140617122-140617409(+)$1	287	47	54	14.7301
###ccc[	chr19:34882638-34882889(+)$1	251	8	15	14.7301
[a[dddd	chr19:34873815-34874084(+)$1	269	245	252	17.0317
ndddd33	chr13:20617726-20618014(+)$1	288	59	66	17.0317
KCCC{EE	chr6:109702902-109703172(-)$1	270	108	115	13.6984
dddd]dd	chr3:187454542-187454771(-)$1	229	101	108	14.0158
dddd:::	chr13:113869269-113869547(+)$1	278	35	42	13.2222
eefffff	chr3:171899874-171900256(+)$1	382	33	40	12.9841
=======	chr2:62952478-62952740(+)$1	262	113	120	17.0317
ee[dddd	chr21:47564609-47564880(-)$1	271	102	109	13.3809
IIcccqq	chr15:25310857-25311161(+)$1	304	74	81	13.3015
[eeeeeb	chr16:89513043-89513344(-)$1	301	67	74	12.9841
}CCC}CC	chr6:32940631-32940945(+)$1	314	235	242	17.0317
eeeeemm	chr15:25309306-25309580(+)$1	274	150	157	13.3015
nnnnnff	chr13:113869985-113870243(+)$1	258	32	39	13.2222
ddd]ddd	chr19:34874288-34874552(+)$1	264	22	29	14.7301
fffff]a	chr7:158324767-158324987(-)$1	220	102	109	13.3809
b]ddddc	chr16:1125548-1125819(-)$1	271	217	224	13.2222
]ccc]bb	chr15:25307669-25307952(+)$1	283	58	65	12.9841
33ggggg	chr12:6619582-6619816(+)$1	234	139	146	13.3809
JMMMMA{	chr16:89513438-89513690(-)$1	252	125	132	13.3015
KKDDDD{	chr20:36146112-36146375(-)$1	263	142	149	14.7301
[gggggg	chr11:70504172-70504430(-)$1	258	113	120	13.3015
ffffff$	chr16:89511244-89511527(-)$1	283	211	218	17.0317
JJJJJJJ	chr16:89381315-89381555(-)$1	240	46	53	13.2222
c"""ggg	chr19:34874071-34874318(+)$1	247	168	175	14.7301
:::::gg	chr19:34883560-34883784(+)$1	224	184	191	14.7301
fffoooo	chr10:81458664-81458929(-)$1	265	161	168	14.7301
eee[add	chr19:34878316-34878551(+)$1	235	20	27	12.9841
ee[dddd	chr21:47564693-47564965(-)$1	272	187	194	13.3809
dd[a"""	chr7:104752716-104752963(-)$1	247	106	113	14.7301
bb22ggg	chr6:160133083-160133342(-)$1	259	38	45	17.0317
dddd[dd	chr14:39835793-39836048(+)$1	255	3	10	17.0317
mdddd:b	chr11:70633570-70633863(-)$1	293	34	41	17.0317
ccmmmmc	chr7:5391764-5392007(-)$1	243	2	9	12.9841
cc]eeee	chr19:34882466-34882717(+)$1	251	79	86	14.7301

#DB
(((.(..	chr17:44239780-44240090(-)$1	1	58	65	12.9841
......)	chr5:283928-284175(+)$1	1	207	214	14.0158
(.((...	chr12:6619537-6619767(+)$1	1	184	191	13.3809
.((....	chr12:132478857-132479167(+)$1	1	152	159	13.2222
(.(...(	chrY:2716248-2716502(+)$1	1	104	111	13.3015
(.(((((	chr19:34883610-34883833(+)$1	1	134	141	14.7301
(((((((	chr20:35192525-35192805(-)$1	1	17	24	17.0317
(((((((	chr11:24568417-24568652(+)$1	1	94	101	17.0317
)))))).	chr9:139996410-139996709(+)$1	1	268	275	17.0317
))))).)	chr19:34882400-34882620(+)$1	1	145	152	14.7301
...))))	chr7:116601502-116601794(+)$1	1	143	150	17.0317
((.....	chrY:2716221-2716448(+)$1	1	131	138	13.3015
(...(((	chr19:34874198-34874465(+)$1	1	41	48	14.7301
..).)))	chr19:34883529-34883760(+)$1	1	215	222	14.7301
.((((((	chr5:1069288-1069540(-)$1	1	91	98	14.0158
))(((((	chr9:21878433-21878679(+)$1	1	190	197	13.3809
((.((.(	chr6:32940946-32941203(+)$1	1	67	74	13.3015
((((((.	chr1:9318057-9318319(+)$1	1	233	240	12.9841
.(.((((	chrY:2714650-2714881(+)$1	1	121	128	13.3015
(((((((	chr8:453334-453606(-)$1	1	89	96	13.3015
...((((	chr17:69982-70240(-)$1	1	21	28	13.2222
))))).)	chr19:57350578-57350844(-)$1	1	257	264	13.3015
..((((.	chr12:11005667-11005964(-)$1	1	25	32	14.0158
(((((((	chr14:23778303-23778565(+)$1	1	121	128	14.7301
...)).)	chr17:29632109-29632459(+)$1	1	100	107	13.3015
...(((.	chr13:113760940-113761221(+)$1	1	0	7	14.0158
((..(.(	chr2:32583032-32583281(+)$1	1	95	102	17.0317
((.....	chr9:140617122-140617409(+)$1	1	47	54	14.7301
...(((.	chr19:34882638-34882889(+)$1	1	8	15	14.7301
.(.((((	chr19:34873815-34874084(+)$1	1	245	252	17.0317
.))))..	chr13:20617726-20618014(+)$1	1	59	66	17.0317
.(((.((	chr6:109702902-109703172(-)$1	1	108	115	13.6984
)))).))	chr3:187454542-187454771(-)$1	1	101	108	14.0158
))))...	chr13:113869269-113869547(+)$1	1	35	42	13.2222
(((((((	chr3:171899874-171900256(+)$1	1	33	40	12.9841
)))))))	chr2:62952478-62952740(+)$1	1	113	120	17.0317
((.((((	chr21:47564609-47564880(-)$1	1	102	109	13.3809
(((((..	chr15:25310857-25311161(+)$1	1	74	81	13.3015
.((((((	chr16:89513043-89513344(-)$1	1	67	74	12.9841
.))).))	chr6:32940631-32940945(+)$1	1	235	242	17.0317
(((((..	chr15:25309306-25309580(+)$1	1	150	157	13.3015
.....))	chr13:113869985-113870243(+)$1	1	32	39	13.2222
))).)))	chr19:34874288-34874552(+)$1	1	22	29	14.7301
))))).)	chr7:158324767-158324987(-)$1	1	102	109	13.3809
).)))))	chr16:1125548-1125819(-)$1	1	217	224	13.2222
.))).))	chr15:25307669-25307952(+)$1	1	58	65	12.9841
..)))))	chr12:6619582-6619816(+)$1	1	139	146	13.3809
(....(.	chr16:89513438-89513690(-)$1	1	125	132	13.3015
..((((.	chr20:36146112-36146375(-)$1	1	142	149	14.7301
.((((((	chr11:70504172-70504430(-)$1	1	113	120	13.3015
((((((.	chr16:89511244-89511527(-)$1	1	211	218	17.0317
(((((((	chr16:89381315-89381555(-)$1	1	46	53	13.2222
(...(((	chr19:34874071-34874318(+)$1	1	168	175	14.7301
.....((	chr19:34883560-34883784(+)$1	1	184	191	14.7301
(((....	chr10:81458664-81458929(-)$1	1	161	168	14.7301
(((.(((	chr19:34878316-34878551(+)$1	1	20	27	12.9841
((.((((	chr21:47564693-47564965(-)$1	1	187	194	13.3809
((.(...	chr7:104752716-104752963(-)$1	1	106	113	14.7301
))..)))	chr6:160133083-160133342(-)$1	1	38	45	17.0317
((((.((	chr14:39835793-39836048(+)$1	1	3	10	17.0317
.)))).(	chr11:70633570-70633863(-)$1	1	34	41	17.0317
((....)	chr7:5391764-5392007(-)$1	1	2	9	12.9841
)).))))	chr19:34882466-34882717(+)$1	1	79	86	14.7301

#PSSM
G : 0.63	g : 0.20	U : 0.09	a : 0.01	c : 0.01	A : 0.01	C : 0.01	
U : 0.47	A : 0.22	u : 0.20	G : 0.04	g : 0.03	C : 0.01	
G : 0.76	g : 0.23	
G : 0.61	g : 0.20	C : 0.07	U : 0.06	c : 0.01	u : 0.01	
U : 0.63	u : 0.22	A : 0.09	G : 0.04	
G : 0.77	g : 0.22	
G : 0.77	g : 0.22	

#score	908.2380952380947
#seq	63
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_transcript_m1_run1.nuc.txt

#NT
gagc	chr6:16266340-16266583(+)$1	243	8	12	12.0000
gagc	chr12:6054295-6054510(-)$1	215	38	42	12.0000
gaGC	chr11:17096175-17096386(-)$1	211	184	188	12.0000
gagc	chr9:33952672-33952926(-)$1	254	24	28	12.0000
gagc	chr17:18965291-18965553(+)$1	262	38	42	12.0000
GAGC	chr19:8550833-8551095(+)$1	262	3	7	12.0000
gagc	chr12:6054310-6054520(-)$1	210	48	52	12.0000
GAGC	chr11:126146120-126146361(+)$1	241	236	240	12.0000
gaGC	chr11:17096155-17096375(-)$1	220	173	177	12.0000
GAGC	chr8:48650435-48650652(-)$1	217	27	31	12.0000
GAGC	chr11:122929979-122930223(-)$1	244	5	9	12.0000
GAGC	chr1:109289280-109289510(+)$1	230	111	115	12.0000
GAGC	chr16:72821492-72821755(-)$1	263	23	27	12.0000
GAGC	chr22:38882100-38882389(-)$1	289	88	92	12.0000
gagc	chr20:26180052-26180259(-)$1	207	145	149	12.0000
gaGC	chr11:17097263-17097497(-)$1	234	170	174	12.0000
GAGC	chr9:136217654-136217870(+)$1	216	124	128	12.0000
GAGC	chr8:142425774-142426031(+)$1	257	160	164	12.0000
GAGC	chr4:83816905-83817175(-)$1	270	45	49	12.0000
GAGC	chr20:26189723-26189972(-)$1	249	43	47	12.0000
gagc	chr11:122929515-122929718(-)$1	203	96	100	12.0000
GAGC	chr20:26189713-26189920(-)$1	207	38	42	12.0000
GAGC	chr19:1409153-1409394(+)$1	241	63	67	12.0000
GAGC	chr1:63833241-63833466(+)$1	225	52	56	12.0000
GAGC	chr2:97559946-97560198(-)$1	252	173	177	12.0000
GAGC	chr8:48650427-48650635(-)$1	208	10	14	12.0000
GAGC	chr9:126029939-126030190(-)$1	251	130	134	12.0000
GAGC	chr2:97559862-97560146(-)$1	284	121	125	12.0000
GAGC	chr2:133015223-133015439(-)$1	216	136	140	12.0000
gaGC	chr11:17096135-17096355(-)$1	220	153	157	12.0000
GAGC	chr20:26189693-26189913(-)$1	220	31	35	12.0000
GAGC	chr2:133015127-133015371(-)$1	244	68	72	12.0000
GAGC	chr10:135272188-135272430(+)$1	242	171	175	12.0000
GAGC	chr5:40832658-40832929(-)$1	271	24	28	12.0000
gagc	chr17:80230606-80230856(-)$1	250	5	9	12.0000
gagc	chr17:20772643-20772926(+)$1	283	224	228	12.0000
GAGC	chr20:26189871-26190123(-)$1	252	31	35	12.0000
GAGC	chr7:151845069-151845315(-)$1	246	64	68	12.0000
gagc	chr11:122929940-122930179(-)$1	239	131	135	12.0000
gagc	chr6:16266299-16266514(+)$1	215	24	28	12.0000
gagc	chr6:86352728-86352987(-)$1	259	7	11	12.0000
GAGC	chr20:26189854-26190071(-)$1	217	57	61	12.0000
GAGC	chr3:10362532-10362784(-)$1	252	6	10	12.0000
GAGC	chr9:136217620-136217854(+)$1	234	158	162	12.0000
GAGC	chr3:141153138-141153372(+)$1	234	206	210	12.0000
GAGC	chr2:133015207-133015423(-)$1	216	120	124	12.0000
gagc	chr6:16266314-16266540(+)$1	226	9	13	12.0000
GAGC	chr5:111497178-111497415(+)$1	237	116	120	12.0000
gagc	chr7:72368316-72368572(+)$1	256	25	29	12.0000
GAGC	chr19:13262240-13262471(+)$1	231	170	174	12.0000
gaGC	chr11:17097223-17097463(-)$1	240	136	140	12.0000
GAGC	chr13:92788009-92788232(+)$1	223	0	4	12.0000
gagc	chr11:122929568-122929782(-)$1	214	160	164	12.0000
GAGC	chr19:8550671-8550944(+)$1	273	3	7	12.0000
GAGC	chrX:149108412-149108658(+)$1	246	22	26	12.0000
gAGC	chr16:447647-447876(+)$1	229	97	101	12.0000
gagc	chr11:122929530-122929741(-)$1	211	119	123	12.0000

#otherMatches

#Struct PSSM
e"""	chr11:122929544-122929765(-)$1	221	143	147	12.0000
C:bb	chr6:16266340-16266583(+)$1	243	8	12	12.0000
c[cc	chr12:6054295-6054510(-)$1	215	38	42	12.0000
hhhh	chr11:17096175-17096386(-)$1	211	184	188	12.0000
fff:	chr9:33952672-33952926(-)$1	254	24	28	12.0000
EEEE	chr17:18965291-18965553(+)$1	262	38	42	12.0000
dd!!	chr19:8550833-8551095(+)$1	262	3	7	12.0000
c[ee	chr12:6054310-6054520(-)$1	210	48	52	12.0000
B}BB	chr11:126146120-126146361(+)$1	241	236	240	12.0000
hhhh	chr11:17096155-17096375(-)$1	220	173	177	12.0000
""ee	chr8:48650435-48650652(-)$1	217	27	31	12.0000
FFFe	chr11:122929979-122930223(-)$1	244	5	9	12.0000
mccc	chr1:109289280-109289510(+)$1	230	111	115	12.0000
cctt	chr16:72821492-72821755(-)$1	263	23	27	12.0000
FFFF	chr22:38882100-38882389(-)$1	289	88	92	12.0000
dddd	chr20:26180052-26180259(-)$1	207	145	149	12.0000
e[bb	chr11:17097263-17097497(-)$1	234	170	174	12.0000
JJJJ	chr9:136217654-136217870(+)$1	216	124	128	12.0000
~~~E	chr8:142425774-142426031(+)$1	257	160	164	12.0000
eeee	chr4:83816905-83817175(-)$1	270	45	49	12.0000
::::	chr20:26189723-26189972(-)$1	249	43	47	12.0000
ccc[	chr11:122929515-122929718(-)$1	203	96	100	12.0000
dddd	chr20:26189713-26189920(-)$1	207	38	42	12.0000
JJ{D	chr19:1409153-1409394(+)$1	241	63	67	12.0000
22ff	chr1:63833241-63833466(+)$1	225	52	56	12.0000
ggg!	chr2:97559946-97560198(-)$1	252	173	177	12.0000
EEee	chr8:48650427-48650635(-)$1	208	10	14	12.0000
d]bb	chr9:126029939-126030190(-)$1	251	130	134	12.0000
ggg!	chr2:97559862-97560146(-)$1	284	121	125	12.0000
#bbg	chr2:133015223-133015439(-)$1	216	136	140	12.0000
hhhh	chr11:17096135-17096355(-)$1	220	153	157	12.0000
eemm	chr20:26189693-26189913(-)$1	220	31	35	12.0000
eeee	chr2:133015127-133015371(-)$1	244	68	72	12.0000
b::f	chr10:135272188-135272430(+)$1	242	171	175	12.0000
d]bb	chr5:40832658-40832929(-)$1	271	24	28	12.0000
c[cc	chr17:80230606-80230856(-)$1	250	5	9	12.0000
YYBB	chr17:20772643-20772926(+)$1	283	224	228	12.0000
FFF:	chr20:26189871-26190123(-)$1	252	31	35	12.0000
hhhh	chr7:151845069-151845315(-)$1	246	64	68	12.0000
YGGG	chr11:122929940-122930179(-)$1	239	131	135	12.0000
ccc[	chr6:16266299-16266514(+)$1	215	24	28	12.0000
E:cc	chr6:86352728-86352987(-)$1	259	7	11	12.0000
cc]d	chr20:26189854-26190071(-)$1	217	57	61	12.0000
DDcc	chr3:10362532-10362784(-)$1	252	6	10	12.0000
JJJJ	chr9:136217620-136217854(+)$1	234	158	162	12.0000
4iii	chr3:141153138-141153372(+)$1	234	206	210	12.0000
HHHH	chr2:133015207-133015423(-)$1	216	120	124	12.0000
ccc[	chr6:16266314-16266540(+)$1	226	9	13	12.0000
ffff	chr5:111497178-111497415(+)$1	237	116	120	12.0000
HHHH	chr7:72368316-72368572(+)$1	256	25	29	12.0000
e]ff	chr19:13262240-13262471(+)$1	231	170	174	12.0000
c[ee	chr11:17097223-17097463(-)$1	240	136	140	12.0000
::DD	chr13:92788009-92788232(+)$1	223	0	4	12.0000
FFFF	chr11:122929568-122929782(-)$1	214	160	164	12.0000
b!!b	chr19:8550671-8550944(+)$1	273	3	7	12.0000
f!!h	chrX:149108412-149108658(+)$1	246	22	26	12.0000
dddd	chr16:447647-447876(+)$1	229	97	101	12.0000
ccc[	chr11:122929530-122929741(-)$1	211	119	123	12.0000

#DB
(...	chr11:122929544-122929765(-)$1	1	143	147	12.0000
(.((	chr6:16266340-16266583(+)$1	1	8	12	12.0000
(.((	chr12:6054295-6054510(-)$1	1	38	42	12.0000
))))	chr11:17096175-17096386(-)$1	1	184	188	12.0000
))).	chr9:33952672-33952926(-)$1	1	24	28	12.0000
((((	chr17:18965291-18965553(+)$1	1	38	42	12.0000
((..	chr19:8550833-8551095(+)$1	1	3	7	12.0000
(.((	chr12:6054310-6054520(-)$1	1	48	52	12.0000
).))	chr11:126146120-126146361(+)$1	1	236	240	12.0000
))))	chr11:17096155-17096375(-)$1	1	173	177	12.0000
..((	chr8:48650435-48650652(-)$1	1	27	31	12.0000
((((	chr11:122929979-122930223(-)$1	1	5	9	12.0000
.)))	chr1:109289280-109289510(+)$1	1	111	115	12.0000
((..	chr16:72821492-72821755(-)$1	1	23	27	12.0000
((((	chr22:38882100-38882389(-)$1	1	88	92	12.0000
((((	chr20:26180052-26180259(-)$1	1	145	149	12.0000
(.((	chr11:17097263-17097497(-)$1	1	170	174	12.0000
))))	chr9:136217654-136217870(+)$1	1	124	128	12.0000
...)	chr8:142425774-142426031(+)$1	1	160	164	12.0000
((((	chr4:83816905-83817175(-)$1	1	45	49	12.0000
....	chr20:26189723-26189972(-)$1	1	43	47	12.0000
(((.	chr11:122929515-122929718(-)$1	1	96	100	12.0000
((((	chr20:26189713-26189920(-)$1	1	38	42	12.0000
((.(	chr19:1409153-1409394(+)$1	1	63	67	12.0000
..))	chr1:63833241-63833466(+)$1	1	52	56	12.0000
(((.	chr2:97559946-97560198(-)$1	1	173	177	12.0000
((((	chr8:48650427-48650635(-)$1	1	10	14	12.0000
).))	chr9:126029939-126030190(-)$1	1	130	134	12.0000
(((.	chr2:97559862-97560146(-)$1	1	121	125	12.0000
.(((	chr2:133015223-133015439(-)$1	1	136	140	12.0000
))))	chr11:17096135-17096355(-)$1	1	153	157	12.0000
((..	chr20:26189693-26189913(-)$1	1	31	35	12.0000
))))	chr2:133015127-133015371(-)$1	1	68	72	12.0000
)..(	chr10:135272188-135272430(+)$1	1	171	175	12.0000
).))	chr5:40832658-40832929(-)$1	1	24	28	12.0000
(.((	chr17:80230606-80230856(-)$1	1	5	9	12.0000
..))	chr17:20772643-20772926(+)$1	1	224	228	12.0000
(((.	chr20:26189871-26190123(-)$1	1	31	35	12.0000
((((	chr7:151845069-151845315(-)$1	1	64	68	12.0000
.)))	chr11:122929940-122930179(-)$1	1	131	135	12.0000
(((.	chr6:16266299-16266514(+)$1	1	24	28	12.0000
(.((	chr6:86352728-86352987(-)$1	1	7	11	12.0000
)).)	chr20:26189854-26190071(-)$1	1	57	61	12.0000
((((	chr3:10362532-10362784(-)$1	1	6	10	12.0000
))))	chr9:136217620-136217854(+)$1	1	158	162	12.0000
.)))	chr3:141153138-141153372(+)$1	1	206	210	12.0000
))((	chr2:133015207-133015423(-)$1	1	120	124	12.0000
(((.	chr6:16266314-16266540(+)$1	1	9	13	12.0000
))))	chr5:111497178-111497415(+)$1	1	116	120	12.0000
((((	chr7:72368316-72368572(+)$1	1	25	29	12.0000
).))	chr19:13262240-13262471(+)$1	1	170	174	12.0000
(.((	chr11:17097223-17097463(-)$1	1	136	140	12.0000
..((	chr13:92788009-92788232(+)$1	1	0	4	12.0000
))))	chr11:122929568-122929782(-)$1	1	160	164	12.0000
(..(	chr19:8550671-8550944(+)$1	1	3	7	12.0000
(..(	chrX:149108412-149108658(+)$1	1	22	26	12.0000
((((	chr16:447647-447876(+)$1	1	97	101	12.0000
(((.	chr11:122929530-122929741(-)$1	1	119	123	12.0000

#PSSM
G : 0.60	g : 0.39	
A : 0.62	a : 0.37	
G : 0.70	g : 0.29	
C : 0.70	c : 0.29	

#score	696.0000000000001
#seq	58
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_CDS_m2_run1.nuc.txt

#NT
UUUUCUG	chr4:83277688-83277937(-)$1	249	23	30	13.1774
UUCUCUU	chr7:128398932-128399187(+)$1	255	195	202	12.6129
UUUUGUU	chr20:61538582-61538815(-)$1	233	91	98	13.6612
UUUUCUU	chr8:97621602-97621882(+)$1	280	50	57	17.0483
UUUUCUC	chr7:72912826-72913093(-)$1	267	41	48	13.3387
UUCUCUU	chr6:144806533-144806745(+)$1	212	148	155	12.6129
UUUCCUU	chr20:36374769-36375075(+)$1	306	66	73	12.6935
UUUUUUU	chr2:153515737-153515971(-)$1	234	81	88	14.3064
UCUUCUU	chr22:41572158-41572385(+)$1	227	93	100	12.2096
UUUUCUC	chr3:171410026-171410339(-)$1	313	91	98	13.3387
UUUUCCU	chr1:245018645-245018900(-)$1	255	96	103	12.6935
CUUUCUU	chr6:144803306-144803559(+)$1	253	24	31	12.6129
UUUUCUG	chr3:17413511-17413840(-)$1	329	87	94	13.1774
UUUUUUU	chr1:39851017-39851277(+)$1	260	46	53	14.3064
UUUUCUU	chr2:198262713-198262940(-)$1	227	55	62	17.0483
UUUUCCU	chr21:38537757-38538059(+)$1	302	4	11	12.6935
GUUUCUU	chr16:11940300-11940553(-)$1	253	6	13	12.6935
UUUUUUU	chr1:24973087-24973382(+)$1	295	19	26	14.3064
uuuacuu	chr6:56499498-56499799(-)$1	301	13	20	12.7741
UUUUAUU	chr12:76449711-76449985(-)$1	274	177	184	13.6612
UUCUCUU	chr7:107577531-107577764(-)$1	233	30	37	12.6129
UUUUCUU	chr18:21140293-21140547(-)$1	254	23	30	17.0483
UUUUCCU	chr6:30550744-30551036(+)$1	292	81	88	12.6935
UUUUUUU	chr22:31333985-31334264(-)$1	279	55	62	14.3064
UUUUCUU	chr1:207930782-207931025(+)$1	243	91	98	17.0483
UUUUCUA	chr2:54882957-54883184(+)$1	227	13	20	13.1774
UUUUCAU	chr2:32772875-32773120(+)$1	245	18	25	12.6129
UUUUCUU	chr5:145499926-145500167(-)$1	241	81	88	17.0483
GUUUCUU	chr6:56376057-56376298(-)$1	241	8	15	12.6935
UUUUCUA	chr19:4430491-4430743(+)$1	252	14	21	13.1774
UUUUCUG	chr2:216295340-216295550(-)$1	210	155	162	13.1774
UUUUUUU	chr11:129992099-129992371(+)$1	272	77	84	14.3064
UUUUUUU	chr6:7301575-7301834(-)$1	259	2	9	14.3064
UUUUCUU	chr5:95231235-95231494(-)$1	259	87	94	17.0483
UUUUAUU	chr1:8074321-8074557(-)$1	236	73	80	13.6612
UUUUUUU	chr6:7575447-7575707(+)$1	260	59	66	14.3064
UUUACUU	chr2:216262376-216262612(-)$1	236	17	24	12.7741
UUUUGUU	chr11:118888093-118888312(-)$1	219	39	46	13.6612
UUUUCAU	chr21:27327942-27328169(-)$1	227	80	87	12.6129
UUUUUUU	chr6:144808583-144808791(+)$1	208	75	82	14.3064
UUUUCUU	chr2:85778930-85779204(-)$1	274	86	93	17.0483
uuuuuuu	chr12:26835487-26835706(-)$1	219	75	82	14.3064
UUUUCUC	chr14:23792485-23792719(+)$1	234	83	90	13.3387
UUUUAUU	chr20:8626661-8626910(+)$1	249	181	188	13.6612
UUUGCUU	chr4:151836659-151836912(-)$1	253	20	27	12.6129
UUUUUUU	chr20:34312391-34312627(-)$1	236	140	147	14.3064
UUUUCUU	chr9:710928-711195(+)$1	267	227	234	17.0483
GUUUCUU	chr6:11191097-11191375(-)$1	278	245	252	12.6935
UUUUCUC	chrX:20185627-20185877(-)$1	250	97	104	13.3387
UUUUCUC	chr2:54876925-54877178(+)$1	253	238	245	13.3387
UUUUCUA	chr20:25433986-25434235(-)$1	249	159	166	13.1774
UUUACUU	chr9:131353679-131353971(+)$1	292	44	51	12.7741
UUUUGUU	chr12:104340345-104340572(+)$1	227	18	25	13.6612
UUGUCUU	chr11:121475776-121476060(+)$1	284	18	25	12.4516
UUUCCUU	chr1:32653484-32653776(+)$1	292	275	282	12.6935
UUUUCUU	chr4:74310733-74310939(+)$1	206	147	154	17.0483
UUUUCUU	chr10:70525674-70525937(+)$1	263	243	250	17.0483
CUUUCUU	chr2:178083874-178084088(+)$1	214	20	27	12.6129
UUUUUUU	chr3:41265916-41266172(+)$1	256	37	44	14.3064
UUUUCUU	chr1:19472189-19472462(-)$1	273	16	23	17.0483
UUUUCUU	chr20:8665584-8665826(+)$1	242	229	236	17.0483

#otherMatches

#Struct PSSM
ggggddd	chr2:21238249-21238468(-)$1	219	36	43	17.0483
gg::EEE	chr4:83277688-83277937(-)$1	249	23	30	13.1774
ffffFFF	chr7:128398932-128399187(+)$1	255	195	202	12.6129
3eeeee2	chr20:61538582-61538815(-)$1	233	91	98	13.6612
fffffff	chr8:97621602-97621882(+)$1	280	50	57	17.0483
iiiiiii	chr7:72912826-72913093(-)$1	267	41	48	13.3387
qqqqqqq	chr6:144806533-144806745(+)$1	212	148	155	12.6129
ffffff"	chr20:36374769-36375075(+)$1	306	66	73	12.6935
c"""hhh	chr2:153515737-153515971(-)$1	234	81	88	14.3064
fffffff	chr22:41572158-41572385(+)$1	227	93	100	12.2096
cc[bboo	chr3:171410026-171410339(-)$1	313	91	98	13.3387
B//////	chr1:245018645-245018900(-)$1	255	96	103	12.6935
hhhh[cc	chr6:144803306-144803559(+)$1	253	24	31	12.6129
hhhhhhh	chr3:17413511-17413840(-)$1	329	87	94	13.1774
vvvvvvv	chr1:39851017-39851277(+)$1	260	46	53	14.3064
ccc####	chr2:198262713-198262940(-)$1	227	55	62	17.0483
hhhhhhm	chr21:38537757-38538059(+)$1	302	4	11	12.6935
dlllddd	chr16:11940300-11940553(-)$1	253	6	13	12.6935
[ddddmm	chr1:24973087-24973382(+)$1	295	19	26	14.3064
fff[hhh	chr6:56499498-56499799(-)$1	301	13	20	12.7741
!ddddmm	chr12:76449711-76449985(-)$1	274	177	184	13.6612
EEEffff	chr7:107577531-107577764(-)$1	233	30	37	12.6129
ggooooo	chr18:21140293-21140547(-)$1	254	23	30	17.0483
ooooodd	chr6:30550744-30551036(+)$1	292	81	88	12.6935
gggggg[	chr22:31333985-31334264(-)$1	279	55	62	14.3064
:ffffff	chr1:207930782-207931025(+)$1	243	91	98	17.0483
ffffff]	chr2:54882957-54883184(+)$1	227	13	20	13.1774
mmmeeee	chr2:32772875-32773120(+)$1	245	18	25	12.6129
oooooob	chr5:145499926-145500167(-)$1	241	81	88	17.0483
####eee	chr6:56376057-56376298(-)$1	241	8	15	12.6935
CC{CCC:	chr19:4430491-4430743(+)$1	252	14	21	13.1774
hhhhhhh	chr2:216295340-216295550(-)$1	210	155	162	13.1774
JJJJJJJ	chr11:129992099-129992371(+)$1	272	77	84	14.3064
:::::HH	chr6:7301575-7301834(-)$1	259	2	9	14.3064
ee!!ddd	chr5:95231235-95231494(-)$1	259	87	94	17.0483
nnnnfff	chr1:8074321-8074557(-)$1	236	73	80	13.6612
zzzzzzz	chr6:7575447-7575707(+)$1	260	59	66	14.3064
GGGGGKK	chr2:216262376-216262612(-)$1	236	17	24	12.7741
iiiiiii	chr11:118888093-118888312(-)$1	219	39	46	13.6612
ff:::::	chr21:27327942-27328169(-)$1	227	80	87	12.6129
:::::::	chr6:144808583-144808791(+)$1	208	75	82	14.3064
dd$$$$$	chr2:85778930-85779204(-)$1	274	86	93	17.0483
eee####	chr12:26835487-26835706(-)$1	219	75	82	14.3064
:::::::	chr14:23792485-23792719(+)$1	234	83	90	13.3387
+++++++	chr20:8626661-8626910(+)$1	249	181	188	13.6612
JJJbbmm	chr4:151836659-151836912(-)$1	253	20	27	12.6129
ggfffff	chr20:34312391-34312627(-)$1	236	140	147	14.3064
ffffffr	chr9:710928-711195(+)$1	267	227	234	17.0483
eeeee::	chr6:11191097-11191375(-)$1	278	245	252	12.6935
ee]eeee	chrX:20185627-20185877(-)$1	250	97	104	13.3387
:::::::	chr2:54876925-54877178(+)$1	253	238	245	13.3387
::JJJJJ	chr20:25433986-25434235(-)$1	249	159	166	13.1774
ooooeee	chr9:131353679-131353971(+)$1	292	44	51	12.7741
rrrrrrr	chr12:104340345-104340572(+)$1	227	18	25	13.6612
cffffff	chr11:121475776-121476060(+)$1	284	18	25	12.4516
eeeffff	chr1:32653484-32653776(+)$1	292	275	282	12.6935
::=====	chr4:74310733-74310939(+)$1	206	147	154	17.0483
JJJJJJJ	chr10:70525674-70525937(+)$1	263	243	250	17.0483
ooooddd	chr2:178083874-178084088(+)$1	214	20	27	12.6129
:::::::	chr3:41265916-41266172(+)$1	256	37	44	14.3064
::hhhhh	chr1:19472189-19472462(-)$1	273	16	23	17.0483
GGGGGGG	chr20:8665584-8665826(+)$1	242	229	236	17.0483

#DB
(((((((	chr2:21238249-21238468(-)$1	1	36	43	17.0483
))..(((	chr4:83277688-83277937(-)$1	1	23	30	13.1774
)))))))	chr7:128398932-128399187(+)$1	1	195	202	12.6129
.))))).	chr20:61538582-61538815(-)$1	1	91	98	13.6612
(((((((	chr8:97621602-97621882(+)$1	1	50	57	17.0483
(((((((	chr7:72912826-72913093(-)$1	1	41	48	13.3387
.......	chr6:144806533-144806745(+)$1	1	148	155	12.6129
((((((.	chr20:36374769-36375075(+)$1	1	66	73	12.6935
(...(((	chr2:153515737-153515971(-)$1	1	81	88	14.3064
)))))))	chr22:41572158-41572385(+)$1	1	93	100	12.2096
((.((..	chr3:171410026-171410339(-)$1	1	91	98	13.3387
)......	chr1:245018645-245018900(-)$1	1	96	103	12.6935
((((.((	chr6:144803306-144803559(+)$1	1	24	31	12.6129
(((((((	chr3:17413511-17413840(-)$1	1	87	94	13.1774
.......	chr1:39851017-39851277(+)$1	1	46	53	14.3064
(((....	chr2:198262713-198262940(-)$1	1	55	62	17.0483
((((((.	chr21:38537757-38538059(+)$1	1	4	11	12.6935
(...)))	chr16:11940300-11940553(-)$1	1	6	13	12.6935
.((((..	chr1:24973087-24973382(+)$1	1	19	26	14.3064
(((.(((	chr6:56499498-56499799(-)$1	1	13	20	12.7741
.((((..	chr12:76449711-76449985(-)$1	1	177	184	13.6612
(((((((	chr7:107577531-107577764(-)$1	1	30	37	12.6129
((.....	chr18:21140293-21140547(-)$1	1	23	30	17.0483
.....))	chr6:30550744-30551036(+)$1	1	81	88	12.6935
((((((.	chr22:31333985-31334264(-)$1	1	55	62	14.3064
.((((((	chr1:207930782-207931025(+)$1	1	91	98	17.0483
)))))).	chr2:54882957-54883184(+)$1	1	13	20	13.1774
...))))	chr2:32772875-32773120(+)$1	1	18	25	12.6129
......)	chr5:145499926-145500167(-)$1	1	81	88	17.0483
....(((	chr6:56376057-56376298(-)$1	1	8	15	12.6935
((.(((.	chr19:4430491-4430743(+)$1	1	14	21	13.1774
(((((((	chr2:216295340-216295550(-)$1	1	155	162	13.1774
(((((((	chr11:129992099-129992371(+)$1	1	77	84	14.3064
.....((	chr6:7301575-7301834(-)$1	1	2	9	14.3064
((..(((	chr5:95231235-95231494(-)$1	1	87	94	17.0483
....)))	chr1:8074321-8074557(-)$1	1	73	80	13.6612
.......	chr6:7575447-7575707(+)$1	1	59	66	14.3064
(((((..	chr2:216262376-216262612(-)$1	1	17	24	12.7741
(((((((	chr11:118888093-118888312(-)$1	1	39	46	13.6612
)).....	chr21:27327942-27328169(-)$1	1	80	87	12.6129
.......	chr6:144808583-144808791(+)$1	1	75	82	14.3064
((.....	chr2:85778930-85779204(-)$1	1	86	93	17.0483
(((....	chr12:26835487-26835706(-)$1	1	75	82	14.3064
.......	chr14:23792485-23792719(+)$1	1	83	90	13.3387
.......	chr20:8626661-8626910(+)$1	1	181	188	13.6612
(((((..	chr4:151836659-151836912(-)$1	1	20	27	12.6129
(((((((	chr20:34312391-34312627(-)$1	1	140	147	14.3064
((((((.	chr9:710928-711195(+)$1	1	227	234	17.0483
)))))..	chr6:11191097-11191375(-)$1	1	245	252	12.6935
)).))))	chrX:20185627-20185877(-)$1	1	97	104	13.3387
.......	chr2:54876925-54877178(+)$1	1	238	245	13.3387
..(((((	chr20:25433986-25434235(-)$1	1	159	166	13.1774
....)))	chr9:131353679-131353971(+)$1	1	44	51	12.7741
.......	chr12:104340345-104340572(+)$1	1	18	25	13.6612
)))))))	chr11:121475776-121476060(+)$1	1	18	25	12.4516
)))))))	chr1:32653484-32653776(+)$1	1	275	282	12.6935
..(((((	chr4:74310733-74310939(+)$1	1	147	154	17.0483
)))))))	chr10:70525674-70525937(+)$1	1	243	250	17.0483
....)))	chr2:178083874-178084088(+)$1	1	20	27	12.6129
.......	chr3:41265916-41266172(+)$1	1	37	44	14.3064
..(((((	chr1:19472189-19472462(-)$1	1	16	23	17.0483
)))))))	chr20:8665584-8665826(+)$1	1	229	236	17.0483

#PSSM
U : 0.88	G : 0.04	C : 0.03	u : 0.03	
U : 0.95	u : 0.03	C : 0.01	
U : 0.90	C : 0.04	u : 0.03	G : 0.01	
U : 0.88	C : 0.03	A : 0.03	a : 0.01	u : 0.01	G : 0.01	
C : 0.70	U : 0.16	G : 0.04	A : 0.04	c : 0.01	u : 0.01	
U : 0.88	C : 0.04	u : 0.03	A : 0.03	
U : 0.79	C : 0.08	G : 0.04	A : 0.04	u : 0.03	

#score	872.1612903225794
#seq	62
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_UTR_m3_run2.nuc.txt

#NT
CAG	chr22:45725636-45725884(+)$1	248	27	30	8.9999
CAG	chr22:46508745-46508979(+)$1	234	14	17	8.9999
CAG	chr17:28444011-28444230(+)$1	219	108	111	8.9999
CAG	chr11:61583234-61583502(-)$1	268	70	73	8.9999
CAG	chr17:30801680-30801883(+)$1	203	69	72	8.9999
CAG	chr17:56405888-56406161(-)$1	273	17	20	8.9999
CAG	chr9:140006577-140006827(-)$1	250	29	32	8.9999
CAG	chr17:46655730-46655996(-)$1	266	45	48	8.9999
CAG	chr8:41513164-41513391(-)$1	227	15	18	8.9999
cag	chr2:97535541-97535806(-)$1	265	73	76	8.9999
CAG	chr3:49058343-49058552(-)$1	209	22	25	8.9999
CAG	chr17:8108163-8108386(-)$1	223	21	24	8.9999
cag	chr9:134269414-134269692(+)$1	278	17	20	8.9999
CAG	chr1:2122044-2122255(-)$1	211	5	8	8.9999
CAG	chr11:3877203-3877466(+)$1	263	4	7	8.9999
CAg	chr19:46142162-46142429(-)$1	267	49	52	8.9999
CAG	chr5:134363648-134363982(-)$1	334	113	116	8.9999
CAG	chr22:20073371-20073578(+)$1	207	2	5	8.9999
CAG	chr14:23426069-23426293(-)$1	224	28	31	8.9999
CAG	chr10:70287015-70287285(-)$1	270	14	17	8.9999
CAG	chr22:20067738-20067961(+)$1	223	44	47	8.9999
CAG	chr6:32938575-32938814(+)$1	239	114	117	8.9999
CAG	chr19:46142229-46142544(-)$1	315	14	17	8.9999
CAG	chr10:105153954-105154208(-)$1	254	2	5	8.9999
CAG	chr21:34821528-34821834(-)$1	306	61	64	8.9999
CAG	chr13:113918551-113918803(+)$1	252	8	11	8.9999
CAG	chr9:101558651-101558910(-)$1	259	21	24	8.9999
CAG	chr17:8108125-8108363(-)$1	238	40	43	8.9999
CAG	chr22:22277185-22277446(-)$1	261	36	39	8.9999
CAG	chr2:97504366-97504609(-)$1	243	1	4	8.9999
CAG	chr22:20073166-20073369(+)$1	203	40	43	8.9999
CAG	chr9:97848099-97848350(+)$1	251	109	112	8.9999
CAG	chr22:20073378-20073640(+)$1	262	3	6	8.9999
CAG	chr17:27717512-27717774(+)$1	262	110	113	8.9999
CAG	chr3:20081761-20082033(+)$1	272	7	10	8.9999
CAG	chr3:49055857-49056129(-)$1	272	1	4	8.9999
CAG	chr22:20073153-20073360(+)$1	207	0	3	8.9999
CAG	chr22:20073257-20073483(+)$1	226	3	6	8.9999
CAG	chr19:917326-917630(+)$1	304	5	8	8.9999
CAG	chr19:18111906-18112175(+)$1	269	27	30	8.9999
CAG	chr16:2139071-2139371(-)$1	300	41	44	8.9999
CAG	chr17:8108202-8108422(-)$1	220	16	19	8.9999
CAG	chr9:86584580-86584830(-)$1	250	29	32	8.9999
CAG	chr9:139560096-139560344(+)$1	248	8	11	8.9999
CAG	chr12:69135560-69135827(+)$1	267	127	130	8.9999
CAG	chr3:48229392-48229658(-)$1	266	73	76	8.9999
CAG	chr11:61583478-61583750(-)$1	272	1	4	8.9999
CAG	chr9:97848227-97848469(+)$1	242	8	11	8.9999
CAG	chr10:105154009-105154218(-)$1	209	12	15	8.9999
CAG	chr22:46508411-46508701(+)$1	290	31	34	8.9999
CAG	chr1:2123469-2123748(-)$1	279	61	64	8.9999
CAG	chr12:62997081-62997361(+)$1	280	4	7	8.9999
CAG	chr17:56405961-56406241(-)$1	280	1	4	8.9999
CAG	chr22:20052627-20052879(+)$1	252	23	26	8.9999
CAG	chr22:20073107-20073353(+)$1	246	46	49	8.9999
CAG	chr17:27717611-27717858(+)$1	247	11	14	8.9999
CAG	chr17:46657007-46657252(-)$1	245	61	64	8.9999
CAG	chr17:72858658-72858970(-)$1	312	2	5	8.9999
CAG	chr6:27094956-27095164(-)$1	208	9	12	8.9999
CAG	chr17:46657263-46657525(-)$1	262	81	84	8.9999
CAG	chr11:118965239-118965471(-)$1	232	175	178	8.9999
CAG	chr17:46656335-46656607(-)$1	272	16	19	8.9999
CAG	chr10:115933766-115933985(-)$1	219	10	13	8.9999
CAG	chr3:49057691-49058004(-)$1	313	22	25	8.9999
CAG	chr22:20073309-20073559(+)$1	250	40	43	8.9999
CAG	chr11:65179136-65179400(+)$1	264	24	27	8.9999
CAG	chrX:151125779-151125988(-)$1	209	27	30	8.9999
CAG	chr9:86584630-86584853(-)$1	223	52	55	8.9999
CAG	chr11:61582541-61582778(-)$1	237	16	19	8.9999
CAG	chr17:28444030-28444238(+)$1	208	89	92	8.9999
CAG	chr16:1821310-1821567(-)$1	257	153	156	8.9999
CAG	chr17:46657131-46657365(-)$1	234	174	177	8.9999
CAG	chr17:33966639-33966880(+)$1	241	27	30	8.9999
CAG	chr17:56405561-56405937(-)$1	376	9	12	8.9999
CAG	chr19:46142055-46142293(-)$1	238	21	24	8.9999
CAG	chr2:85772094-85772349(+)$1	255	14	17	8.9999
CAG	chr19:18111975-18112272(+)$1	297	85	88	8.9999
CAG	chr22:20073359-20073571(+)$1	212	7	10	8.9999
CAG	chr11:118965271-118965508(-)$1	237	212	215	8.9999
CAG	chr17:46657165-46657383(-)$1	218	192	195	8.9999
CAG	chr22:19951923-19952171(+)$1	248	7	10	8.9999
CAG	chr3:49057855-49058094(-)$1	239	7	10	8.9999
CAG	chr1:2122202-2122496(-)$1	294	9	12	8.9999
CAG	chr11:64073015-64073272(+)$1	257	37	40	8.9999
CAG	chr3:20081610-20081841(+)$1	231	15	18	8.9999
CAG	chr22:20073192-20073405(+)$1	213	14	17	8.9999
CAG	chr10:121700992-121701244(+)$1	252	29	32	8.9999
CAG	chr16:618544-618760(+)$1	216	62	65	8.9999
CAG	chr17:76793750-76793967(-)$1	217	3	6	8.9999
CAG	chr7:127732464-127732717(+)$1	253	1	4	8.9999
CAG	chr17:46657183-46657430(-)$1	247	13	16	8.9999
CAG	chr1:26232387-26232649(-)$1	262	140	143	8.9999
CAG	chr20:62572717-62572971(-)$1	254	69	72	8.9999
CAG	chr3:49058680-49058908(-)$1	228	24	27	8.9999
CAG	chr3:49050262-49050495(+)$1	233	21	24	8.9999

#otherMatches

#Struct PSSM
=!!	chr17:28444038-28444275(+)$1	237	81	84	8.9999
EEE	chr22:45725636-45725884(+)$1	248	27	30	8.9999
eee	chr22:46508745-46508979(+)$1	234	14	17	8.9999
=!!	chr17:28444011-28444230(+)$1	219	108	111	8.9999
e!!	chr11:61583234-61583502(-)$1	268	70	73	8.9999
bbb	chr17:30801680-30801883(+)$1	203	69	72	8.9999
III	chr17:56405888-56406161(-)$1	273	17	20	8.9999
qqq	chr9:140006577-140006827(-)$1	250	29	32	8.9999
J::	chr17:46655730-46655996(-)$1	266	45	48	8.9999
ccc	chr8:41513164-41513391(-)$1	227	15	18	8.9999
A::	chr2:97535541-97535806(-)$1	265	73	76	8.9999
lee	chr3:49058343-49058552(-)$1	209	22	25	8.9999
EEE	chr17:8108163-8108386(-)$1	223	21	24	8.9999
KKE	chr9:134269414-134269692(+)$1	278	17	20	8.9999
KKE	chr1:2122044-2122255(-)$1	211	5	8	8.9999
::E	chr11:3877203-3877466(+)$1	263	4	7	8.9999
HHh	chr19:46142162-46142429(-)$1	267	49	52	8.9999
{EE	chr5:134363648-134363982(-)$1	334	113	116	8.9999
FFF	chr22:20073371-20073578(+)$1	207	2	5	8.9999
{CC	chr14:23426069-23426293(-)$1	224	28	31	8.9999
III	chr10:70287015-70287285(-)$1	270	14	17	8.9999
DDD	chr22:20067738-20067961(+)$1	223	44	47	8.9999
bdd	chr6:32938575-32938814(+)$1	239	114	117	8.9999
fff	chr19:46142229-46142544(-)$1	315	14	17	8.9999
ccc	chr10:105153954-105154208(-)$1	254	2	5	8.9999
een	chr21:34821528-34821834(-)$1	306	61	64	8.9999
ccc	chr13:113918551-113918803(+)$1	252	8	11	8.9999
c$$	chr9:101558651-101558910(-)$1	259	21	24	8.9999
33c	chr17:8108125-8108363(-)$1	238	40	43	8.9999
pdd	chr22:22277185-22277446(-)$1	261	36	39	8.9999
::C	chr2:97504366-97504609(-)$1	243	1	4	8.9999
sss	chr22:20073166-20073369(+)$1	203	40	43	8.9999
d]g	chr9:97848099-97848350(+)$1	251	109	112	8.9999
d!!	chr22:20073378-20073640(+)$1	262	3	6	8.9999
mdd	chr17:27717512-27717774(+)$1	262	110	113	8.9999
DDD	chr3:20081761-20082033(+)$1	272	7	10	8.9999
:BB	chr3:49055857-49056129(-)$1	272	1	4	8.9999
:hh	chr22:20073153-20073360(+)$1	207	0	3	8.9999
[ee	chr22:20073257-20073483(+)$1	226	3	6	8.9999
d[a	chr19:917326-917630(+)$1	304	5	8	8.9999
xxx	chr19:18111906-18112175(+)$1	269	27	30	8.9999
{CC	chr16:2139071-2139371(-)$1	300	41	44	8.9999
ggg	chr17:8108202-8108422(-)$1	220	16	19	8.9999
eee	chr9:86584580-86584830(-)$1	250	29	32	8.9999
fee	chr9:139560096-139560344(+)$1	248	8	11	8.9999
ddd	chr12:69135560-69135827(+)$1	267	127	130	8.9999
ddE	chr3:48229392-48229658(-)$1	266	73	76	8.9999
B{C	chr11:61583478-61583750(-)$1	272	1	4	8.9999
mmd	chr9:97848227-97848469(+)$1	242	8	11	8.9999
!!c	chr10:105154009-105154218(-)$1	209	12	15	8.9999
eee	chr22:46508411-46508701(+)$1	290	31	34	8.9999
22c	chr1:2123469-2123748(-)$1	279	61	64	8.9999
ggg	chr12:62997081-62997361(+)$1	280	4	7	8.9999
:::	chr17:56405961-56406241(-)$1	280	1	4	8.9999
ddF	chr22:20052627-20052879(+)$1	252	23	26	8.9999
$hh	chr22:20073107-20073353(+)$1	246	46	49	8.9999
::G	chr17:27717611-27717858(+)$1	247	11	14	8.9999
hhh	chr17:46657007-46657252(-)$1	245	61	64	8.9999
::B	chr17:72858658-72858970(-)$1	312	2	5	8.9999
BB:	chr6:27094956-27095164(-)$1	208	9	12	8.9999
EEE	chr17:46657263-46657525(-)$1	262	81	84	8.9999
gww	chr11:118965239-118965471(-)$1	232	175	178	8.9999
ddd	chr17:46656335-46656607(-)$1	272	16	19	8.9999
ooo	chr10:115933766-115933985(-)$1	219	10	13	8.9999
e[d	chr3:49057691-49058004(-)$1	313	22	25	8.9999
fff	chr22:20073309-20073559(+)$1	250	40	43	8.9999
ff:	chr11:65179136-65179400(+)$1	264	24	27	8.9999
::g	chrX:151125779-151125988(-)$1	209	27	30	8.9999
ddd	chr9:86584630-86584853(-)$1	223	52	55	8.9999
LCC	chr11:61582541-61582778(-)$1	237	16	19	8.9999
=!!	chr17:28444030-28444238(+)$1	208	89	92	8.9999
d:b	chr16:1821310-1821567(-)$1	257	153	156	8.9999
hhh	chr17:46657131-46657365(-)$1	234	174	177	8.9999
nnn	chr17:33966639-33966880(+)$1	241	27	30	8.9999
::i	chr17:56405561-56405937(-)$1	376	9	12	8.9999
fff	chr19:46142055-46142293(-)$1	238	21	24	8.9999
ddd	chr2:85772094-85772349(+)$1	255	14	17	8.9999
cmm	chr19:18111975-18112272(+)$1	297	85	88	8.9999
!!b	chr22:20073359-20073571(+)$1	212	7	10	8.9999
gww	chr11:118965271-118965508(-)$1	237	212	215	8.9999
hhh	chr17:46657165-46657383(-)$1	218	192	195	8.9999
EEE	chr22:19951923-19952171(+)$1	248	7	10	8.9999
DD{	chr3:49057855-49058094(-)$1	239	7	10	8.9999
:::	chr1:2122202-2122496(-)$1	294	9	12	8.9999
bb!	chr11:64073015-64073272(+)$1	257	37	40	8.9999
A:d	chr3:20081610-20081841(+)$1	231	15	18	8.9999
sss	chr22:20073192-20073405(+)$1	213	14	17	8.9999
:::	chr10:121700992-121701244(+)$1	252	29	32	8.9999
ccc	chr16:618544-618760(+)$1	216	62	65	8.9999
EEE	chr17:76793750-76793967(-)$1	217	3	6	8.9999
:::	chr7:127732464-127732717(+)$1	253	1	4	8.9999
NEE	chr17:46657183-46657430(-)$1	247	13	16	8.9999
fff	chr1:26232387-26232649(-)$1	262	140	143	8.9999
EEE	chr20:62572717-62572971(-)$1	254	69	72	8.9999
ooo	chr3:49058680-49058908(-)$1	228	24	27	8.9999
""d	chr3:49050262-49050495(+)$1	233	21	24	8.9999

#DB
(..	chr17:28444038-28444275(+)$1	1	81	84	8.9999
(((	chr22:45725636-45725884(+)$1	1	27	30	8.9999
(((	chr22:46508745-46508979(+)$1	1	14	17	8.9999
(..	chr17:28444011-28444230(+)$1	1	108	111	8.9999
(..	chr11:61583234-61583502(-)$1	1	70	73	8.9999
(((	chr17:30801680-30801883(+)$1	1	69	72	8.9999
(((	chr17:56405888-56406161(-)$1	1	17	20	8.9999
...	chr9:140006577-140006827(-)$1	1	29	32	8.9999
(..	chr17:46655730-46655996(-)$1	1	45	48	8.9999
)))	chr8:41513164-41513391(-)$1	1	15	18	8.9999
(..	chr2:97535541-97535806(-)$1	1	73	76	8.9999
.))	chr3:49058343-49058552(-)$1	1	22	25	8.9999
(((	chr17:8108163-8108386(-)$1	1	21	24	8.9999
..(	chr9:134269414-134269692(+)$1	1	17	20	8.9999
..(	chr1:2122044-2122255(-)$1	1	5	8	8.9999
..(	chr11:3877203-3877466(+)$1	1	4	7	8.9999
(((	chr19:46142162-46142429(-)$1	1	49	52	8.9999
.((	chr5:134363648-134363982(-)$1	1	113	116	8.9999
(((	chr22:20073371-20073578(+)$1	1	2	5	8.9999
.((	chr14:23426069-23426293(-)$1	1	28	31	8.9999
(((	chr10:70287015-70287285(-)$1	1	14	17	8.9999
(((	chr22:20067738-20067961(+)$1	1	44	47	8.9999
)))	chr6:32938575-32938814(+)$1	1	114	117	8.9999
(((	chr19:46142229-46142544(-)$1	1	14	17	8.9999
(((	chr10:105153954-105154208(-)$1	1	2	5	8.9999
((.	chr21:34821528-34821834(-)$1	1	61	64	8.9999
)))	chr13:113918551-113918803(+)$1	1	8	11	8.9999
(..	chr9:101558651-101558910(-)$1	1	21	24	8.9999
..)	chr17:8108125-8108363(-)$1	1	40	43	8.9999
.))	chr22:22277185-22277446(-)$1	1	36	39	8.9999
..(	chr2:97504366-97504609(-)$1	1	1	4	8.9999
...	chr22:20073166-20073369(+)$1	1	40	43	8.9999
).)	chr9:97848099-97848350(+)$1	1	109	112	8.9999
(..	chr22:20073378-20073640(+)$1	1	3	6	8.9999
.))	chr17:27717512-27717774(+)$1	1	110	113	8.9999
(((	chr3:20081761-20082033(+)$1	1	7	10	8.9999
.((	chr3:49055857-49056129(-)$1	1	1	4	8.9999
.((	chr22:20073153-20073360(+)$1	1	0	3	8.9999
.((	chr22:20073257-20073483(+)$1	1	3	6	8.9999
(.(	chr19:917326-917630(+)$1	1	5	8	8.9999
...	chr19:18111906-18112175(+)$1	1	27	30	8.9999
.((	chr16:2139071-2139371(-)$1	1	41	44	8.9999
(((	chr17:8108202-8108422(-)$1	1	16	19	8.9999
(((	chr9:86584580-86584830(-)$1	1	29	32	8.9999
(((	chr9:139560096-139560344(+)$1	1	8	11	8.9999
)))	chr12:69135560-69135827(+)$1	1	127	130	8.9999
))(	chr3:48229392-48229658(-)$1	1	73	76	8.9999
(.(	chr11:61583478-61583750(-)$1	1	1	4	8.9999
..)	chr9:97848227-97848469(+)$1	1	8	11	8.9999
..(	chr10:105154009-105154218(-)$1	1	12	15	8.9999
(((	chr22:46508411-46508701(+)$1	1	31	34	8.9999
..)	chr1:2123469-2123748(-)$1	1	61	64	8.9999
(((	chr12:62997081-62997361(+)$1	1	4	7	8.9999
...	chr17:56405961-56406241(-)$1	1	1	4	8.9999
))(	chr22:20052627-20052879(+)$1	1	23	26	8.9999
.((	chr22:20073107-20073353(+)$1	1	46	49	8.9999
..(	chr17:27717611-27717858(+)$1	1	11	14	8.9999
(((	chr17:46657007-46657252(-)$1	1	61	64	8.9999
..(	chr17:72858658-72858970(-)$1	1	2	5	8.9999
((.	chr6:27094956-27095164(-)$1	1	9	12	8.9999
(((	chr17:46657263-46657525(-)$1	1	81	84	8.9999
(..	chr11:118965239-118965471(-)$1	1	175	178	8.9999
)))	chr17:46656335-46656607(-)$1	1	16	19	8.9999
...	chr10:115933766-115933985(-)$1	1	10	13	8.9999
(.(	chr3:49057691-49058004(-)$1	1	22	25	8.9999
)))	chr22:20073309-20073559(+)$1	1	40	43	8.9999
)).	chr11:65179136-65179400(+)$1	1	24	27	8.9999
..(	chrX:151125779-151125988(-)$1	1	27	30	8.9999
)))	chr9:86584630-86584853(-)$1	1	52	55	8.9999
.((	chr11:61582541-61582778(-)$1	1	16	19	8.9999
(..	chr17:28444030-28444238(+)$1	1	89	92	8.9999
).(	chr16:1821310-1821567(-)$1	1	153	156	8.9999
(((	chr17:46657131-46657365(-)$1	1	174	177	8.9999
...	chr17:33966639-33966880(+)$1	1	27	30	8.9999
..(	chr17:56405561-56405937(-)$1	1	9	12	8.9999
(((	chr19:46142055-46142293(-)$1	1	21	24	8.9999
(((	chr2:85772094-85772349(+)$1	1	14	17	8.9999
(..	chr19:18111975-18112272(+)$1	1	85	88	8.9999
..(	chr22:20073359-20073571(+)$1	1	7	10	8.9999
(..	chr11:118965271-118965508(-)$1	1	212	215	8.9999
)))	chr17:46657165-46657383(-)$1	1	192	195	8.9999
(((	chr22:19951923-19952171(+)$1	1	7	10	8.9999
((.	chr3:49057855-49058094(-)$1	1	7	10	8.9999
...	chr1:2122202-2122496(-)$1	1	9	12	8.9999
((.	chr11:64073015-64073272(+)$1	1	37	40	8.9999
(.(	chr3:20081610-20081841(+)$1	1	15	18	8.9999
...	chr22:20073192-20073405(+)$1	1	14	17	8.9999
...	chr10:121700992-121701244(+)$1	1	29	32	8.9999
(((	chr16:618544-618760(+)$1	1	62	65	8.9999
(((	chr17:76793750-76793967(-)$1	1	3	6	8.9999
...	chr7:127732464-127732717(+)$1	1	1	4	8.9999
.((	chr17:46657183-46657430(-)$1	1	13	16	8.9999
)))	chr1:26232387-26232649(-)$1	1	140	143	8.9999
(((	chr20:62572717-62572971(-)$1	1	69	72	8.9999
...	chr3:49058680-49058908(-)$1	1	24	27	8.9999
..(	chr3:49050262-49050495(+)$1	1	21	24	8.9999

#PSSM
C : 0.97	c : 0.02	
A : 0.97	a : 0.02	
G : 0.96	g : 0.03	

#score	863.9999999999998
#seq	96
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_UTR_m1_run2.nuc.txt

#NT
GGAG	chr11:61553880-61554201(+)$1	321	24	28	12.0000
GGAG	chr2:43451198-43451440(-)$1	242	2	6	12.0000
GGAG	chrX:108976342-108976592(-)$1	250	243	247	12.0000
GGAG	chr9:84303808-84304044(-)$1	236	15	19	12.0000
GGAG	chr19:56166234-56166479(+)$1	245	9	13	12.0000
GGAG	chr9:38620177-38620474(-)$1	297	97	101	12.0000
GGAG	chr14:69256339-69256604(-)$1	265	105	109	12.0000
GGAG	chr2:201828158-201828417(-)$1	259	3	7	12.0000
GGAG	chr5:1463564-1463808(-)$1	244	56	60	12.0000
GGAG	chr6:32940465-32940683(+)$1	218	24	28	12.0000
GGAG	chr20:30193935-30194181(+)$1	246	60	64	12.0000
GGAG	chr2:20647761-20647989(+)$1	228	124	128	12.0000
GGAG	chrX:17755533-17755823(+)$1	290	64	68	12.0000
GGAG	chr10:74034915-74035161(+)$1	246	21	25	12.0000
GGAG	chr2:208631425-208631668(-)$1	243	0	4	12.0000
GGAG	chr17:77081884-77082155(+)$1	271	41	45	12.0000
GGAG	chr4:516183-516478(+)$1	295	96	100	12.0000
GGAG	chr7:92244008-92244258(-)$1	250	126	130	12.0000
GGAG	chr12:72056814-72057058(-)$1	244	69	73	12.0000
GGAG	chr14:24906386-24906648(+)$1	262	44	48	12.0000
GGAG	chr17:1945862-1946121(+)$1	259	49	53	12.0000
GGAG	chr2:28635618-28635856(+)$1	238	44	48	12.0000
GGAG	chr19:11242349-11242582(+)$1	233	74	78	12.0000
GGAG	chr19:56599213-56599469(-)$1	256	5	9	12.0000
GGAG	chr3:49050502-49050793(+)$1	291	55	59	12.0000
GGAG	chr6:24495112-24495373(+)$1	261	134	138	12.0000
GGAG	chr3:52326726-52326964(+)$1	238	7	11	12.0000
GGAG	chr3:187447505-187447732(-)$1	227	28	32	12.0000
GGAG	chr22:37425605-37425878(+)$1	273	124	128	12.0000
GGAG	chr17:38278854-38279109(+)$1	255	169	173	12.0000
GGAG	chr19:59055753-59056028(+)$1	275	171	175	12.0000
GGAG	chr3:56716970-56717222(-)$1	252	48	52	12.0000
GGAG	chr17:74733228-74733492(-)$1	264	40	44	12.0000
GGAG	chr16:30543682-30543937(-)$1	255	198	202	12.0000
GGAG	chr2:220082882-220083115(-)$1	233	58	62	12.0000
GGAG	chr14:69256491-69256753(-)$1	262	254	258	12.0000
GGAG	chr14:24607998-24608247(+)$1	249	0	4	12.0000
GGAG	chr17:44248417-44248659(-)$1	242	124	128	12.0000
GGAG	chr4:1809187-1809431(+)$1	244	138	142	12.0000
GGAG	chr5:137089753-137089997(-)$1	244	204	208	12.0000
GGAG	chr19:54972482-54972726(+)$1	244	140	144	12.0000
GGAG	chr11:82868371-82868657(+)$1	286	2	6	12.0000
GGAG	chr17:77758836-77759142(+)$1	306	109	113	12.0000
GGAG	chr3:57743291-57743574(+)$1	283	35	39	12.0000
GGAG	chr3:129274383-129274620(-)$1	237	78	82	12.0000
GGAG	chr2:100055540-100055818(-)$1	278	151	155	12.0000
GGAG	chr6:30711595-30711816(-)$1	221	40	44	12.0000
GGAG	chr19:18978118-18978380(+)$1	262	140	144	12.0000
GGAG	chr18:56063313-56063645(+)$1	332	303	307	12.0000
GGAG	chr16:11036093-11036343(-)$1	250	4	8	12.0000
GGAG	chr17:53345122-53345448(+)$1	326	105	109	12.0000
GGAG	chr8:126442641-126442914(+)$1	273	14	18	12.0000
GGAG	chr17:3512859-3513121(-)$1	262	81	85	12.0000
GGAG	chr2:71351306-71351552(-)$1	246	85	89	12.0000
GGAG	chr2:20647740-20647957(+)$1	217	145	149	12.0000
GGAG	chr6:37141776-37142066(+)$1	290	135	139	12.0000
GGAG	chr6:32939513-32939732(+)$1	219	71	75	12.0000
GGAG	chr17:79517481-79517749(-)$1	268	63	67	12.0000
GGAG	chr7:94292545-94292756(+)$1	211	132	136	12.0000
GGAG	chr11:66391873-66392121(+)$1	248	209	213	12.0000
GGAG	chr19:5831178-5831426(-)$1	248	131	135	12.0000
ggag	chr5:92919211-92919450(+)$1	239	31	35	12.0000
GGAG	chr20:43058426-43058713(+)$1	287	90	94	12.0000
GGAG	chr6:32939790-32940040(+)$1	250	24	28	12.0000
GGAG	chr1:180945416-180945696(-)$1	280	36	40	12.0000
GGAG	chr17:63553908-63554198(-)$1	290	5	9	12.0000
GGAG	chr2:171573988-171574216(+)$1	228	44	48	12.0000
GGAG	chr6:30711380-30711603(-)$1	223	17	21	12.0000
GGAG	chr19:1206719-1206989(+)$1	270	108	112	12.0000
GGAG	chr14:21737454-21737679(-)$1	225	5	9	12.0000
GGAG	chr6:31802597-31802842(+)$1	245	162	166	12.0000
GGAG	chr16:70414818-70415076(-)$1	258	88	92	12.0000
GGAG	chr7:73096571-73096876(-)$1	305	49	53	12.0000
GGAG	chr15:80215735-80215990(-)$1	255	65	69	12.0000
GGAG	chr2:20648248-20648500(+)$1	252	21	25	12.0000
GGAG	chr2:128604907-128605155(-)$1	248	238	242	12.0000
GGAG	chr10:79800268-79800495(+)$1	227	109	113	12.0000
GGAG	chr20:48808458-48808739(+)$1	281	2	6	12.0000
GGAG	chr12:12674022-12674264(-)$1	242	15	19	12.0000
GGAG	chr6:32940306-32940543(+)$1	237	183	187	12.0000
GGAG	chr19:5831017-5831323(-)$1	306	28	32	12.0000
ggag	chr9:80646048-80646322(-)$1	274	32	36	12.0000
GGAG	chr22:31741797-31742048(-)$1	251	114	118	12.0000
GGAG	chr17:42397178-42397393(-)$1	215	34	38	12.0000
ggag	chr5:137088650-137088933(-)$1	283	6	10	12.0000
GGAG	chr13:75936192-75936444(-)$1	252	6	10	12.0000
GGAG	chr12:132195558-132195854(+)$1	296	154	158	12.0000
GGAG	chr16:70406384-70406695(+)$1	311	140	144	12.0000

#otherMatches

#Struct PSSM
cmmm	chr6:30711433-30711681(-)$1	248	95	99	12.0000
FFee	chr11:61553880-61554201(+)$1	321	24	28	12.0000
JJJJ	chr2:43451198-43451440(-)$1	242	2	6	12.0000
JJJJ	chrX:108976342-108976592(-)$1	250	243	247	12.0000
DDDg	chr9:84303808-84304044(-)$1	236	15	19	12.0000
IKKC	chr19:56166234-56166479(+)$1	245	9	13	12.0000
6666	chr9:38620177-38620474(-)$1	297	97	101	12.0000
dddd	chr14:69256339-69256604(-)$1	265	105	109	12.0000
EEEE	chr2:201828158-201828417(-)$1	259	3	7	12.0000
HHHH	chr5:1463564-1463808(-)$1	244	56	60	12.0000
KKDD	chr6:32940465-32940683(+)$1	218	24	28	12.0000
ff[a	chr20:30193935-30194181(+)$1	246	60	64	12.0000
dddd	chr2:20647761-20647989(+)$1	228	124	128	12.0000
fbb"	chrX:17755533-17755823(+)$1	290	64	68	12.0000
c]bb	chr10:74034915-74035161(+)$1	246	21	25	12.0000
BB{H	chr2:208631425-208631668(-)$1	243	0	4	12.0000
gg:D	chr17:77081884-77082155(+)$1	271	41	45	12.0000
hhh]	chr4:516183-516478(+)$1	295	96	100	12.0000
cccc	chr7:92244008-92244258(-)$1	250	126	130	12.0000
&&ee	chr12:72056814-72057058(-)$1	244	69	73	12.0000
ff[c	chr14:24906386-24906648(+)$1	262	44	48	12.0000
bbdd	chr17:1945862-1946121(+)$1	259	49	53	12.0000
qqcc	chr2:28635618-28635856(+)$1	238	44	48	12.0000
dd[a	chr19:11242349-11242582(+)$1	233	74	78	12.0000
a!!a	chr19:56599213-56599469(-)$1	256	5	9	12.0000
eeee	chr3:49050502-49050793(+)$1	291	55	59	12.0000
hhhh	chr6:24495112-24495373(+)$1	261	134	138	12.0000
KKBB	chr3:52326726-52326964(+)$1	238	7	11	12.0000
g!!b	chr3:187447505-187447732(-)$1	227	28	32	12.0000
DDDD	chr22:37425605-37425878(+)$1	273	124	128	12.0000
dd[b	chr17:38278854-38279109(+)$1	255	169	173	12.0000
lfff	chr19:59055753-59056028(+)$1	275	171	175	12.0000
BBKK	chr3:56716970-56717222(-)$1	252	48	52	12.0000
ffff	chr17:74733228-74733492(-)$1	264	40	44	12.0000
JYYC	chr16:30543682-30543937(-)$1	255	198	202	12.0000
ggrr	chr2:220082882-220083115(-)$1	233	58	62	12.0000
FF}B	chr14:69256491-69256753(-)$1	262	254	258	12.0000
:DDD	chr14:24607998-24608247(+)$1	249	0	4	12.0000
ccc"	chr17:44248417-44248659(-)$1	242	124	128	12.0000
gg[e	chr4:1809187-1809431(+)$1	244	138	142	12.0000
eeee	chr5:137089753-137089997(-)$1	244	204	208	12.0000
==[d	chr19:54972482-54972726(+)$1	244	140	144	12.0000
dd!!	chr11:82868371-82868657(+)$1	286	2	6	12.0000
IIII	chr17:77758836-77759142(+)$1	306	109	113	12.0000
eeee	chr3:57743291-57743574(+)$1	283	35	39	12.0000
gggg	chr3:129274383-129274620(-)$1	237	78	82	12.0000
====	chr2:100055540-100055818(-)$1	278	151	155	12.0000
D{BB	chr6:30711595-30711816(-)$1	221	40	44	12.0000
f:EE	chr19:18978118-18978380(+)$1	262	140	144	12.0000
pppd	chr18:56063313-56063645(+)$1	332	303	307	12.0000
:GGG	chr16:11036093-11036343(-)$1	250	4	8	12.0000
eeee	chr17:53345122-53345448(+)$1	326	105	109	12.0000
FFF:	chr8:126442641-126442914(+)$1	273	14	18	12.0000
EEEE	chr17:3512859-3513121(-)$1	262	81	85	12.0000
ccc:	chr2:71351306-71351552(-)$1	246	85	89	12.0000
dddd	chr2:20647740-20647957(+)$1	217	145	149	12.0000
====	chr6:37141776-37142066(+)$1	290	135	139	12.0000
cc[b	chr6:32939513-32939732(+)$1	219	71	75	12.0000
gggg	chr17:79517481-79517749(-)$1	268	63	67	12.0000
:::d	chr7:94292545-94292756(+)$1	211	132	136	12.0000
ccee	chr11:66391873-66392121(+)$1	248	209	213	12.0000
2ggg	chr19:5831178-5831426(-)$1	248	131	135	12.0000
hhhh	chr5:92919211-92919450(+)$1	239	31	35	12.0000
hhhh	chr20:43058426-43058713(+)$1	287	90	94	12.0000
GGGG	chr6:32939790-32940040(+)$1	250	24	28	12.0000
a]hh	chr1:180945416-180945696(-)$1	280	36	40	12.0000
cccc	chr17:63553908-63554198(-)$1	290	5	9	12.0000
dddd	chr2:171573988-171574216(+)$1	228	44	48	12.0000
cmmm	chr6:30711380-30711603(-)$1	223	17	21	12.0000
====	chr19:1206719-1206989(+)$1	270	108	112	12.0000
DDDc	chr14:21737454-21737679(-)$1	225	5	9	12.0000
EEZZ	chr6:31802597-31802842(+)$1	245	162	166	12.0000
EEEE	chr16:70414818-70415076(-)$1	258	88	92	12.0000
FFFF	chr7:73096571-73096876(-)$1	305	49	53	12.0000
IKKC	chr15:80215735-80215990(-)$1	255	65	69	12.0000
ddHH	chr2:20648248-20648500(+)$1	252	21	25	12.0000
ffff	chr2:128604907-128605155(-)$1	248	238	242	12.0000
ggee	chr10:79800268-79800495(+)$1	227	109	113	12.0000
FFFF	chr20:48808458-48808739(+)$1	281	2	6	12.0000
DIII	chr12:12674022-12674264(-)$1	242	15	19	12.0000
bb]b	chr6:32940306-32940543(+)$1	237	183	187	12.0000
:CCC	chr19:5831017-5831323(-)$1	306	28	32	12.0000
ddqq	chr9:80646048-80646322(-)$1	274	32	36	12.0000
d333	chr22:31741797-31742048(-)$1	251	114	118	12.0000
iiii	chr17:42397178-42397393(-)$1	215	34	38	12.0000
EEFF	chr5:137088650-137088933(-)$1	283	6	10	12.0000
EEKK	chr13:75936192-75936444(-)$1	252	6	10	12.0000
cc55	chr12:132195558-132195854(+)$1	296	154	158	12.0000
wwww	chr16:70406384-70406695(+)$1	311	140	144	12.0000

#DB
(...	chr6:30711433-30711681(-)$1	1	95	99	12.0000
((((	chr11:61553880-61554201(+)$1	1	24	28	12.0000
((((	chr2:43451198-43451440(-)$1	1	2	6	12.0000
))))	chrX:108976342-108976592(-)$1	1	243	247	12.0000
((((	chr9:84303808-84304044(-)$1	1	15	19	12.0000
(..(	chr19:56166234-56166479(+)$1	1	9	13	12.0000
....	chr9:38620177-38620474(-)$1	1	97	101	12.0000
))))	chr14:69256339-69256604(-)$1	1	105	109	12.0000
((((	chr2:201828158-201828417(-)$1	1	3	7	12.0000
((((	chr5:1463564-1463808(-)$1	1	56	60	12.0000
..((	chr6:32940465-32940683(+)$1	1	24	28	12.0000
((.(	chr20:30193935-30194181(+)$1	1	60	64	12.0000
))))	chr2:20647761-20647989(+)$1	1	124	128	12.0000
)((.	chrX:17755533-17755823(+)$1	1	64	68	12.0000
).))	chr10:74034915-74035161(+)$1	1	21	25	12.0000
((.(	chr2:208631425-208631668(-)$1	1	0	4	12.0000
)).(	chr17:77081884-77082155(+)$1	1	41	45	12.0000
))).	chr4:516183-516478(+)$1	1	96	100	12.0000
))))	chr7:92244008-92244258(-)$1	1	126	130	12.0000
..((	chr12:72056814-72057058(-)$1	1	69	73	12.0000
((.(	chr14:24906386-24906648(+)$1	1	44	48	12.0000
))))	chr17:1945862-1946121(+)$1	1	49	53	12.0000
..))	chr2:28635618-28635856(+)$1	1	44	48	12.0000
((.(	chr19:11242349-11242582(+)$1	1	74	78	12.0000
(..(	chr19:56599213-56599469(-)$1	1	5	9	12.0000
))))	chr3:49050502-49050793(+)$1	1	55	59	12.0000
((((	chr6:24495112-24495373(+)$1	1	134	138	12.0000
..((	chr3:52326726-52326964(+)$1	1	7	11	12.0000
(..(	chr3:187447505-187447732(-)$1	1	28	32	12.0000
))))	chr22:37425605-37425878(+)$1	1	124	128	12.0000
((.(	chr17:38278854-38279109(+)$1	1	169	173	12.0000
.)))	chr19:59055753-59056028(+)$1	1	171	175	12.0000
((..	chr3:56716970-56717222(-)$1	1	48	52	12.0000
((((	chr17:74733228-74733492(-)$1	1	40	44	12.0000
)..)	chr16:30543682-30543937(-)$1	1	198	202	12.0000
((..	chr2:220082882-220083115(-)$1	1	58	62	12.0000
)).)	chr14:69256491-69256753(-)$1	1	254	258	12.0000
.(((	chr14:24607998-24608247(+)$1	1	0	4	12.0000
(((.	chr17:44248417-44248659(-)$1	1	124	128	12.0000
((.(	chr4:1809187-1809431(+)$1	1	138	142	12.0000
))))	chr5:137089753-137089997(-)$1	1	204	208	12.0000
((.(	chr19:54972482-54972726(+)$1	1	140	144	12.0000
((..	chr11:82868371-82868657(+)$1	1	2	6	12.0000
))))	chr17:77758836-77759142(+)$1	1	109	113	12.0000
((((	chr3:57743291-57743574(+)$1	1	35	39	12.0000
((((	chr3:129274383-129274620(-)$1	1	78	82	12.0000
))))	chr2:100055540-100055818(-)$1	1	151	155	12.0000
(.((	chr6:30711595-30711816(-)$1	1	40	44	12.0000
).))	chr19:18978118-18978380(+)$1	1	140	144	12.0000
...)	chr18:56063313-56063645(+)$1	1	303	307	12.0000
.(((	chr16:11036093-11036343(-)$1	1	4	8	12.0000
((((	chr17:53345122-53345448(+)$1	1	105	109	12.0000
(((.	chr8:126442641-126442914(+)$1	1	14	18	12.0000
((((	chr17:3512859-3513121(-)$1	1	81	85	12.0000
))).	chr2:71351306-71351552(-)$1	1	85	89	12.0000
))))	chr2:20647740-20647957(+)$1	1	145	149	12.0000
))))	chr6:37141776-37142066(+)$1	1	135	139	12.0000
((.(	chr6:32939513-32939732(+)$1	1	71	75	12.0000
))))	chr17:79517481-79517749(-)$1	1	63	67	12.0000
...(	chr7:94292545-94292756(+)$1	1	132	136	12.0000
))))	chr11:66391873-66392121(+)$1	1	209	213	12.0000
.)))	chr19:5831178-5831426(-)$1	1	131	135	12.0000
((((	chr5:92919211-92919450(+)$1	1	31	35	12.0000
((((	chr20:43058426-43058713(+)$1	1	90	94	12.0000
((((	chr6:32939790-32940040(+)$1	1	24	28	12.0000
).))	chr1:180945416-180945696(-)$1	1	36	40	12.0000
((((	chr17:63553908-63554198(-)$1	1	5	9	12.0000
))))	chr2:171573988-171574216(+)$1	1	44	48	12.0000
(...	chr6:30711380-30711603(-)$1	1	17	21	12.0000
))))	chr19:1206719-1206989(+)$1	1	108	112	12.0000
((((	chr14:21737454-21737679(-)$1	1	5	9	12.0000
))..	chr6:31802597-31802842(+)$1	1	162	166	12.0000
((((	chr16:70414818-70415076(-)$1	1	88	92	12.0000
((((	chr7:73096571-73096876(-)$1	1	49	53	12.0000
(..(	chr15:80215735-80215990(-)$1	1	65	69	12.0000
))((	chr2:20648248-20648500(+)$1	1	21	25	12.0000
))))	chr2:128604907-128605155(-)$1	1	238	242	12.0000
))))	chr10:79800268-79800495(+)$1	1	109	113	12.0000
((((	chr20:48808458-48808739(+)$1	1	2	6	12.0000
((((	chr12:12674022-12674264(-)$1	1	15	19	12.0000
)).)	chr6:32940306-32940543(+)$1	1	183	187	12.0000
.(((	chr19:5831017-5831323(-)$1	1	28	32	12.0000
((..	chr9:80646048-80646322(-)$1	1	32	36	12.0000
)...	chr22:31741797-31742048(-)$1	1	114	118	12.0000
((((	chr17:42397178-42397393(-)$1	1	34	38	12.0000
((((	chr5:137088650-137088933(-)$1	1	6	10	12.0000
((..	chr13:75936192-75936444(-)$1	1	6	10	12.0000
))..	chr12:132195558-132195854(+)$1	1	154	158	12.0000
....	chr16:70406384-70406695(+)$1	1	140	144	12.0000

#PSSM
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	

#score	1068.0000000000005
#seq	89
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_transcript_m2_run1.nuc.txt

#NT
gaa	chr17:80230606-80230856(-)$1	250	17	20	8.9999
GAA	chr12:6054310-6054520(-)$1	210	64	67	8.9999
GAA	chrX:118921228-118921462(-)$1	234	14	17	8.9999
GAA	chr9:136217620-136217854(+)$1	234	59	62	8.9999
gaa	chr20:26180052-26180259(-)$1	207	61	64	8.9999
GAA	chrX:118921214-118921428(-)$1	214	15	18	8.9999
GAA	chrM:14361-14591(-)$1	230	48	51	8.9999
GAA	chr20:26189713-26189920(-)$1	207	151	154	8.9999
GAA	chr1:109289280-109289510(+)$1	230	44	47	8.9999
GAA	chr11:17096135-17096355(-)$1	220	41	44	8.9999
GAA	chr2:97559946-97560198(-)$1	252	129	132	8.9999
gaa	chr17:20772643-20772926(+)$1	283	23	26	8.9999
GAA	chr4:83816905-83817175(-)$1	270	59	62	8.9999
GAA	chr6:86352728-86352987(-)$1	259	45	48	8.9999
GAA	chr9:33952672-33952926(-)$1	254	83	86	8.9999
GAA	chr19:13262240-13262471(+)$1	231	10	13	8.9999
GAA	chr1:173835344-173835551(-)$1	207	26	29	8.9999
GAA	chr20:26189693-26189913(-)$1	220	144	147	8.9999
GAA	chr2:133015127-133015371(-)$1	244	132	135	8.9999
gaa	chr8:9629508-9629787(+)$1	279	23	26	8.9999
GAA	chr11:93454751-93454985(+)$1	234	34	37	8.9999
GAA	chr5:111497178-111497415(+)$1	237	29	32	8.9999
GAA	chr2:133015223-133015439(-)$1	216	66	69	8.9999
GAA	chr1:173835351-173835567(-)$1	216	6	9	8.9999
GAA	chr11:17096155-17096375(-)$1	220	61	64	8.9999
GAA	chr12:6619595-6619818(+)$1	223	19	22	8.9999
GAA	chr11:122929979-122930223(-)$1	244	21	24	8.9999
GAA	chr16:72821492-72821755(-)$1	263	32	35	8.9999
gaa	chr7:72368316-72368572(+)$1	256	52	55	8.9999
GAA	chr1:63833241-63833466(+)$1	225	21	24	8.9999
GAA	chrM:1433-1645(+)$1	212	25	28	8.9999
GAA	chr5:40832658-40832929(-)$1	271	57	60	8.9999
GAA	chr2:133015207-133015423(-)$1	216	50	53	8.9999
GAA	chr1:228285804-228286039(+)$1	235	158	161	8.9999
GAA	chr11:122929530-122929741(-)$1	211	23	26	8.9999
GAA	chr11:17097223-17097463(-)$1	240	7	10	8.9999
GAA	chr2:97559862-97560146(-)$1	284	77	80	8.9999
GAA	chr15:38776593-38776846(+)$1	253	148	151	8.9999
gaa	chr6:16266314-16266540(+)$1	226	128	131	8.9999
GAA	chr8:48650435-48650652(-)$1	217	45	48	8.9999
gaa	chr6:16266299-16266514(+)$1	215	143	146	8.9999
GAA	chrX:149108412-149108658(+)$1	246	39	42	8.9999
GAA	chr8:142425774-142426031(+)$1	257	194	197	8.9999
GAA	chr11:122929544-122929765(-)$1	221	47	50	8.9999
GAA	chr9:126029939-126030190(-)$1	251	62	65	8.9999
GAA	chr19:1409153-1409394(+)$1	241	120	123	8.9999
GAA	chr9:136217654-136217870(+)$1	216	25	28	8.9999
gaa	chr11:17097263-17097497(-)$1	234	0	3	8.9999
gaa	chr16:50903257-50903491(-)$1	234	26	29	8.9999
GAA	chr1:145442444-145442652(+)$1	208	32	35	8.9999
GAA	chr3:10362532-10362784(-)$1	252	84	87	8.9999
GAA	chr8:48650427-48650635(-)$1	208	28	31	8.9999
GAA	chr5:134259775-134260015(+)$1	240	32	35	8.9999
GAA	chr3:141153138-141153372(+)$1	234	26	29	8.9999
GAA	chr7:151845069-151845315(-)$1	246	44	47	8.9999
GAA	chr16:447647-447876(+)$1	229	122	125	8.9999
gaa	chr6:16266340-16266583(+)$1	243	102	105	8.9999
gaa	chr17:18965291-18965553(+)$1	262	3	6	8.9999
gaa	chr19:46701103-46701356(-)$1	253	0	3	8.9999
GAA	chr10:135272188-135272430(+)$1	242	96	99	8.9999
GAA	chr11:17096175-17096386(-)$1	211	2	5	8.9999
GAA	chr20:26189871-26190123(-)$1	252	171	174	8.9999
GAA	chr11:62621991-62622218(-)$1	227	63	66	8.9999
GAA	chr3:197901260-197901513(+)$1	253	234	237	8.9999
GAA	chr20:26189854-26190071(-)$1	217	119	122	8.9999
GAA	chr11:122929568-122929782(-)$1	214	64	67	8.9999
GAA	chr11:126146120-126146361(+)$1	241	29	32	8.9999
GAA	chr11:122929515-122929718(-)$1	203	0	3	8.9999
GAA	chr16:89555648-89555907(-)$1	259	44	47	8.9999
GAA	chr13:92788009-92788232(+)$1	223	12	15	8.9999
GAA	chr12:6054295-6054510(-)$1	215	54	57	8.9999
GAA	chrM:1453-1659(+)$1	206	5	8	8.9999
GAA	chr22:38882100-38882389(-)$1	289	16	19	8.9999

#otherMatches

#Struct PSSM
###	chr9:125642399-125642640(-)$1	241	65	68	8.9999
e!!	chr17:80230606-80230856(-)$1	250	17	20	8.9999
b22	chr12:6054310-6054520(-)$1	210	64	67	8.9999
"""	chrX:118921228-118921462(-)$1	234	14	17	8.9999
JJW	chr9:136217620-136217854(+)$1	234	59	62	8.9999
==m	chr20:26180052-26180259(-)$1	207	61	64	8.9999
ggg	chrX:118921214-118921428(-)$1	214	15	18	8.9999
:::	chrM:14361-14591(-)$1	230	48	51	8.9999
hh2	chr20:26189713-26189920(-)$1	207	151	154	8.9999
d::	chr1:109289280-109289510(+)$1	230	44	47	8.9999
JJJ	chr11:17096135-17096355(-)$1	220	41	44	8.9999
###	chr2:97559946-97560198(-)$1	252	129	132	8.9999
xxx	chr17:20772643-20772926(+)$1	283	23	26	8.9999
^^^	chr4:83816905-83817175(-)$1	270	59	62	8.9999
ttt	chr6:86352728-86352987(-)$1	259	45	48	8.9999
DD:	chr9:33952672-33952926(-)$1	254	83	86	8.9999
DDD	chr19:13262240-13262471(+)$1	231	10	13	8.9999
CCC	chr1:173835344-173835551(-)$1	207	26	29	8.9999
hh2	chr20:26189693-26189913(-)$1	220	144	147	8.9999
eee	chr2:133015127-133015371(-)$1	244	132	135	8.9999
EEE	chr8:9629508-9629787(+)$1	279	23	26	8.9999
MMC	chr11:93454751-93454985(+)$1	234	34	37	8.9999
mmm	chr5:111497178-111497415(+)$1	237	29	32	8.9999
d::	chr2:133015223-133015439(-)$1	216	66	69	8.9999
ffp	chr1:173835351-173835567(-)$1	216	6	9	8.9999
III	chr11:17096155-17096375(-)$1	220	61	64	8.9999
eee	chr12:6619595-6619818(+)$1	223	19	22	8.9999
e::	chr11:122929979-122930223(-)$1	244	21	24	8.9999
ttt	chr16:72821492-72821755(-)$1	263	32	35	8.9999
nnn	chr7:72368316-72368572(+)$1	256	52	55	8.9999
ff!	chr1:63833241-63833466(+)$1	225	21	24	8.9999
EE{	chrM:1433-1645(+)$1	212	25	28	8.9999
ooo	chr5:40832658-40832929(-)$1	271	57	60	8.9999
eee	chr2:133015207-133015423(-)$1	216	50	53	8.9999
hh:	chr1:228285804-228286039(+)$1	235	158	161	8.9999
CCd	chr11:122929530-122929741(-)$1	211	23	26	8.9999
BBK	chr11:17097223-17097463(-)$1	240	7	10	8.9999
###	chr2:97559862-97560146(-)$1	284	77	80	8.9999
^^^	chr15:38776593-38776846(+)$1	253	148	151	8.9999
cuu	chr6:16266314-16266540(+)$1	226	128	131	8.9999
ttt	chr8:48650435-48650652(-)$1	217	45	48	8.9999
ddd	chr6:16266299-16266514(+)$1	215	143	146	8.9999
!!b	chrX:149108412-149108658(+)$1	246	39	42	8.9999
A~~	chr8:142425774-142426031(+)$1	257	194	197	8.9999
iii	chr11:122929544-122929765(-)$1	221	47	50	8.9999
uuu	chr9:126029939-126030190(-)$1	251	62	65	8.9999
ddo	chr19:1409153-1409394(+)$1	241	120	123	8.9999
JJW	chr9:136217654-136217870(+)$1	216	25	28	8.9999
:::	chr11:17097263-17097497(-)$1	234	0	3	8.9999
b!!	chr16:50903257-50903491(-)$1	234	26	29	8.9999
cdd	chr1:145442444-145442652(+)$1	208	32	35	8.9999
iii	chr3:10362532-10362784(-)$1	252	84	87	8.9999
ttt	chr8:48650427-48650635(-)$1	208	28	31	8.9999
:::	chr5:134259775-134260015(+)$1	240	32	35	8.9999
[a!	chr3:141153138-141153372(+)$1	234	26	29	8.9999
qqq	chr7:151845069-151845315(-)$1	246	44	47	8.9999
:::	chr16:447647-447876(+)$1	229	122	125	8.9999
cuu	chr6:16266340-16266583(+)$1	243	102	105	8.9999
HHH	chr17:18965291-18965553(+)$1	262	3	6	8.9999
:::	chr19:46701103-46701356(-)$1	253	0	3	8.9999
ooo	chr10:135272188-135272430(+)$1	242	96	99	8.9999
:::	chr11:17096175-17096386(-)$1	211	2	5	8.9999
dd]	chr20:26189871-26190123(-)$1	252	171	174	8.9999
3cc	chr11:62621991-62622218(-)$1	227	63	66	8.9999
:::	chr3:197901260-197901513(+)$1	253	234	237	8.9999
dd]	chr20:26189854-26190071(-)$1	217	119	122	8.9999
iii	chr11:122929568-122929782(-)$1	214	64	67	8.9999
yyy	chr11:126146120-126146361(+)$1	241	29	32	8.9999
:cc	chr11:122929515-122929718(-)$1	203	0	3	8.9999
44e	chr16:89555648-89555907(-)$1	259	44	47	8.9999
:ee	chr13:92788009-92788232(+)$1	223	12	15	8.9999
cqq	chr12:6054295-6054510(-)$1	215	54	57	8.9999
GGG	chrM:1453-1659(+)$1	206	5	8	8.9999
dd[	chr22:38882100-38882389(-)$1	289	16	19	8.9999

#DB
...	chr9:125642399-125642640(-)$1	1	65	68	8.9999
(..	chr17:80230606-80230856(-)$1	1	17	20	8.9999
)..	chr12:6054310-6054520(-)$1	1	64	67	8.9999
...	chrX:118921228-118921462(-)$1	1	14	17	8.9999
((.	chr9:136217620-136217854(+)$1	1	59	62	8.9999
((.	chr20:26180052-26180259(-)$1	1	61	64	8.9999
)))	chrX:118921214-118921428(-)$1	1	15	18	8.9999
...	chrM:14361-14591(-)$1	1	48	51	8.9999
)).	chr20:26189713-26189920(-)$1	1	151	154	8.9999
)..	chr1:109289280-109289510(+)$1	1	44	47	8.9999
(((	chr11:17096135-17096355(-)$1	1	41	44	8.9999
...	chr2:97559946-97560198(-)$1	1	129	132	8.9999
...	chr17:20772643-20772926(+)$1	1	23	26	8.9999
...	chr4:83816905-83817175(-)$1	1	59	62	8.9999
...	chr6:86352728-86352987(-)$1	1	45	48	8.9999
((.	chr9:33952672-33952926(-)$1	1	83	86	8.9999
(((	chr19:13262240-13262471(+)$1	1	10	13	8.9999
(((	chr1:173835344-173835551(-)$1	1	26	29	8.9999
)).	chr20:26189693-26189913(-)$1	1	144	147	8.9999
(((	chr2:133015127-133015371(-)$1	1	132	135	8.9999
(((	chr8:9629508-9629787(+)$1	1	23	26	8.9999
..(	chr11:93454751-93454985(+)$1	1	34	37	8.9999
...	chr5:111497178-111497415(+)$1	1	29	32	8.9999
)..	chr2:133015223-133015439(-)$1	1	66	69	8.9999
((.	chr1:173835351-173835567(-)$1	1	6	9	8.9999
(((	chr11:17096155-17096375(-)$1	1	61	64	8.9999
(((	chr12:6619595-6619818(+)$1	1	19	22	8.9999
)..	chr11:122929979-122930223(-)$1	1	21	24	8.9999
...	chr16:72821492-72821755(-)$1	1	32	35	8.9999
...	chr7:72368316-72368572(+)$1	1	52	55	8.9999
((.	chr1:63833241-63833466(+)$1	1	21	24	8.9999
((.	chrM:1433-1645(+)$1	1	25	28	8.9999
...	chr5:40832658-40832929(-)$1	1	57	60	8.9999
(((	chr2:133015207-133015423(-)$1	1	50	53	8.9999
)).	chr1:228285804-228286039(+)$1	1	158	161	8.9999
(((	chr11:122929530-122929741(-)$1	1	23	26	8.9999
((.	chr11:17097223-17097463(-)$1	1	7	10	8.9999
...	chr2:97559862-97560146(-)$1	1	77	80	8.9999
...	chr15:38776593-38776846(+)$1	1	148	151	8.9999
(..	chr6:16266314-16266540(+)$1	1	128	131	8.9999
...	chr8:48650435-48650652(-)$1	1	45	48	8.9999
)))	chr6:16266299-16266514(+)$1	1	143	146	8.9999
..(	chrX:149108412-149108658(+)$1	1	39	42	8.9999
)..	chr8:142425774-142426031(+)$1	1	194	197	8.9999
)))	chr11:122929544-122929765(-)$1	1	47	50	8.9999
...	chr9:126029939-126030190(-)$1	1	62	65	8.9999
((.	chr19:1409153-1409394(+)$1	1	120	123	8.9999
((.	chr9:136217654-136217870(+)$1	1	25	28	8.9999
...	chr11:17097263-17097497(-)$1	1	0	3	8.9999
(..	chr16:50903257-50903491(-)$1	1	26	29	8.9999
)))	chr1:145442444-145442652(+)$1	1	32	35	8.9999
(((	chr3:10362532-10362784(-)$1	1	84	87	8.9999
...	chr8:48650427-48650635(-)$1	1	28	31	8.9999
...	chr5:134259775-134260015(+)$1	1	32	35	8.9999
.(.	chr3:141153138-141153372(+)$1	1	26	29	8.9999
...	chr7:151845069-151845315(-)$1	1	44	47	8.9999
...	chr16:447647-447876(+)$1	1	122	125	8.9999
(..	chr6:16266340-16266583(+)$1	1	102	105	8.9999
(((	chr17:18965291-18965553(+)$1	1	3	6	8.9999
...	chr19:46701103-46701356(-)$1	1	0	3	8.9999
...	chr10:135272188-135272430(+)$1	1	96	99	8.9999
...	chr11:17096175-17096386(-)$1	1	2	5	8.9999
)).	chr20:26189871-26190123(-)$1	1	171	174	8.9999
.))	chr11:62621991-62622218(-)$1	1	63	66	8.9999
...	chr3:197901260-197901513(+)$1	1	234	237	8.9999
)).	chr20:26189854-26190071(-)$1	1	119	122	8.9999
)))	chr11:122929568-122929782(-)$1	1	64	67	8.9999
...	chr11:126146120-126146361(+)$1	1	29	32	8.9999
.((	chr11:122929515-122929718(-)$1	1	0	3	8.9999
..)	chr16:89555648-89555907(-)$1	1	44	47	8.9999
.((	chr13:92788009-92788232(+)$1	1	12	15	8.9999
(..	chr12:6054295-6054510(-)$1	1	54	57	8.9999
(((	chrM:1453-1659(+)$1	1	5	8	8.9999
((.	chr22:38882100-38882389(-)$1	1	16	19	8.9999

#PSSM
G : 0.83	g : 0.16	
A : 0.83	a : 0.16	
A : 0.83	a : 0.16	

#score	665.9999999999998
#seq	74
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_transcript_m3_run1.nuc.txt

#NT
CCGGGCC	chr3:48465378-48465599(-)$1	221	136	143	13.1323
CGGGGCC	chr19:36303078-36303354(-)$1	276	235	242	16.8088
CGGCGCC	chr1:234744856-234745064(-)$1	208	42	49	12.5441
CGUGGCC	chr6:32940759-32940992(+)$1	233	176	183	13.2794
CGUGGCC	chr1:211751524-211751777(-)$1	253	182	189	13.2794
CGGGGCC	chr14:23450542-23450813(-)$1	271	63	70	16.8088
CGGGGGC	chr12:6602869-6603108(+)$1	239	153	160	12.3235
CCGGGCC	chr16:30976162-30976428(+)$1	266	55	62	13.1323
CGGGGCC	chr14:54417035-54417256(-)$1	221	117	124	16.8088
CGGGGUC	chr10:79793524-79793765(+)$1	241	48	55	12.4705
CGGGGCC	chr16:24551483-24551750(+)$1	267	6	13	16.8088
CGGGGCC	chr14:21560249-21560479(-)$1	230	24	31	16.8088
CGGGGCA	chr16:31469799-31470040(-)$1	241	39	46	12.1029
CUGGGCC	chr16:67978398-67978646(-)$1	248	60	67	13.2058
CGGGCCC	chr6:158516591-158516832(+)$1	241	108	115	12.4705
CGCGGCC	chr5:1463564-1463808(-)$1	244	63	70	13.2058
AGGGGCC	chr21:34922690-34922947(+)$1	257	30	37	12.6911
CGGGCCC	chr18:74091503-74091754(-)$1	251	131	138	12.4705
UGGGGCC	chr22:41832291-41832548(-)$1	257	249	256	12.7647
CGGUGCC	chr2:74708905-74709255(-)$1	350	89	96	12.3235
CGCGGCC	chr19:18390849-18391078(-)$1	229	84	91	13.2058
CGGGACC	chr16:70414906-70415148(-)$1	242	84	91	12.4705
AGGGGCC	chr9:14775909-14776158(-)$1	249	71	78	12.6911
CGGGGCG	chr8:11660463-11660733(+)$1	270	1	8	12.1764
CGGGGCG	chr19:18391024-18391308(-)$1	284	67	74	12.1764
CGUGGCC	chr16:67974053-67974300(-)$1	247	15	22	13.2794
CGGGGCC	chr22:29445605-29445834(+)$1	229	40	47	16.8088
CGGGGCC	chr18:20716290-20716541(+)$1	251	35	42	16.8088
UGGGGCC	chr16:70433037-70433278(-)$1	241	129	136	12.7647
CCGGGCC	chr3:48465207-48465463(-)$1	256	0	7	13.1323
CAGGGCC	chr14:105996099-105996361(+)$1	262	32	39	12.9117
CCGGGCC	chr1:8418342-8418601(-)$1	259	82	89	13.1323
CGGGGCC	chr3:10291016-10291292(+)$1	276	149	156	16.8088
cgcggcc	chr12:124017855-124018167(-)$1	312	40	47	13.2058
GGGGGCC	chr14:23537452-23537725(-)$1	273	51	58	12.6176
CGGCGCC	chr1:27320577-27320815(+)$1	238	48	55	12.5441
CGCGGCC	chr1:234744620-234744863(-)$1	243	160	167	13.2058
CUGGGCC	chr6:170065224-170065509(-)$1	285	108	115	13.2058
cUGGGCC	chr8:121823799-121824101(-)$1	302	46	53	13.2058
CGUGGCC	chr7:5427527-5427770(-)$1	243	112	119	13.2794
UGGGGCC	chr2:70057231-70057475(+)$1	244	103	110	12.7647
CGUGGCC	chr3:49052295-49052533(+)$1	238	50	57	13.2794
CGGGACC	chr20:44519032-44519273(-)$1	241	108	115	12.4705
CGAGGCC	chr6:32940421-32940665(+)$1	244	199	206	13.0588
CGGGGUC	chr1:110884604-110884868(+)$1	264	173	180	12.4705
CGGGGCC	chr7:1027997-1028240(+)$1	243	69	76	16.8088
CGAGGCC	chr16:89267412-89267661(-)$1	249	41	48	13.0588
CCGGGCC	chr16:30567152-30567399(-)$1	247	82	89	13.1323
UGGGGCC	chr6:43752777-43753023(+)$1	246	108	115	12.7647
CGGCGCC	chr16:30544217-30544459(-)$1	242	127	134	12.5441
GGGGGCC	chr1:55315310-55315539(-)$1	229	102	109	12.6176
CGGAGCC	chr4:38690357-38690669(+)$1	312	199	206	12.3235
CGAGGCC	chr12:133372587-133372834(-)$1	247	204	211	13.0588
CGGGGCC	chr17:7751511-7751775(+)$1	264	19	26	16.8088
CGUGGCC	chr12:121439347-121439605(+)$1	258	92	99	13.2794
CUGGGCC	chr2:74668932-74669178(-)$1	246	29	36	13.2058
CUGGGCC	chr1:234742767-234743037(-)$1	270	79	86	13.2058
AGGGGCC	chr16:2162005-2162261(-)$1	256	73	80	12.6911
CGGGGUC	chr1:236958794-236959052(+)$1	258	41	48	12.4705
cgcggcc	chr20:306926-307180(+)$1	254	6	13	13.2058
CGGGGAC	chr16:9185417-9185657(+)$1	240	30	37	12.3970
CAGGGCC	chr16:31720385-31720625(+)$1	240	128	135	12.9117
CUGGGCC	chr16:89629412-89629651(+)$1	239	109	116	13.2058
CGGGACC	chr12:12870448-12870716(+)$1	268	5	12	12.4705
CGGCGCC	chr5:92919584-92919820(+)$1	236	59	66	12.5441
CGGGGCC	chr12:57039594-57039840(-)$1	246	134	141	16.8088
CGGGCCC	chr2:71559434-71559713(+)$1	279	13	20	12.4705

#otherMatches

#Struct PSSM
ddddddd	chr6:24357780-24358014(-)$1	234	107	114	12.3970
dd22bb3	chr3:48465378-48465599(-)$1	221	136	143	13.1323
deeeeeb	chr19:36303078-36303354(-)$1	276	235	242	16.8088
ffffffd	chr1:234744856-234745064(-)$1	208	42	49	12.5441
hhh:bbc	chr6:32940759-32940992(+)$1	233	176	183	13.2794
b22ccc2	chr1:211751524-211751777(-)$1	253	182	189	13.2794
=======	chr14:23450542-23450813(-)$1	271	63	70	16.8088
eeeee[c	chr12:6602869-6603108(+)$1	239	153	160	12.3235
::dddd!	chr16:30976162-30976428(+)$1	266	55	62	13.1323
iiiiii3	chr14:54417035-54417256(-)$1	221	117	124	16.8088
ggggg!!	chr10:79793524-79793765(+)$1	241	48	55	12.4705
EEEEE::	chr16:24551483-24551750(+)$1	267	6	13	16.8088
bbdddd!	chr14:21560249-21560479(-)$1	230	24	31	16.8088
2eeeee:	chr16:31469799-31470040(-)$1	241	39	46	12.1029
iiiiibb	chr16:67978398-67978646(-)$1	248	60	67	13.2058
:eeeeea	chr6:158516591-158516832(+)$1	241	108	115	12.4705
fffffoo	chr5:1463564-1463808(-)$1	244	63	70	13.2058
ddfffff	chr21:34922690-34922947(+)$1	257	30	37	12.6911
ddddlll	chr18:74091503-74091754(-)$1	251	131	138	12.4705
DDDD:::	chr22:41832291-41832548(-)$1	257	249	256	12.7647
GKKDDDD	chr2:74708905-74709255(-)$1	350	89	96	12.3235
$eeeee[	chr19:18390849-18391078(-)$1	229	84	91	13.2058
[eeeeen	chr16:70414906-70415148(-)$1	242	84	91	12.4705
qqqqqqq	chr9:14775909-14776158(-)$1	249	71	78	12.6911
JJJJJJJ	chr8:11660463-11660733(+)$1	270	1	8	12.1764
hhhhhhh	chr19:18391024-18391308(-)$1	284	67	74	12.1764
[dddd!!	chr16:67974053-67974300(-)$1	247	15	22	13.2794
ffffff:	chr22:29445605-29445834(+)$1	229	40	47	16.8088
fffnnnn	chr18:20716290-20716541(+)$1	251	35	42	16.8088
eeeeebb	chr16:70433037-70433278(-)$1	241	129	136	12.7647
:dddd##	chr3:48465207-48465463(-)$1	256	0	7	13.1323
EEEE{HH	chr14:105996099-105996361(+)$1	262	32	39	12.9117
ddeeeee	chr1:8418342-8418601(-)$1	259	82	89	13.1323
d:dddd[	chr3:10291016-10291292(+)$1	276	149	156	16.8088
]dddd::	chr12:124017855-124018167(-)$1	312	40	47	13.2058
ggggg]e	chr14:23537452-23537725(-)$1	273	51	58	12.6176
e:eeeee	chr1:27320577-27320815(+)$1	238	48	55	12.5441
ggg[bbl	chr1:234744620-234744863(-)$1	243	160	167	13.2058
FF:cccb	chr6:170065224-170065509(-)$1	285	108	115	13.2058
EEEADDD	chr8:121823799-121824101(-)$1	302	46	53	13.2058
bbmmmmb	chr7:5427527-5427770(-)$1	243	112	119	13.2794
llldddd	chr2:70057231-70057475(+)$1	244	103	110	12.7647
offffff	chr3:49052295-49052533(+)$1	238	50	57	13.2794
bbccc::	chr20:44519032-44519273(-)$1	241	108	115	12.4705
bb]dddd	chr6:32940421-32940665(+)$1	244	199	206	13.0588
'dddduu	chr1:110884604-110884868(+)$1	264	173	180	12.4705
:dddd!!	chr7:1027997-1028240(+)$1	243	69	76	16.8088
CCccc""	chr16:89267412-89267661(-)$1	249	41	48	13.0588
dd]ccc2	chr16:30567152-30567399(-)$1	247	82	89	13.1323
eeeeiii	chr6:43752777-43753023(+)$1	246	108	115	12.7647
iiiiccc	chr16:30544217-30544459(-)$1	242	127	134	12.5441
nnnhhhh	chr1:55315310-55315539(-)$1	229	102	109	12.6176
ccc]bb:	chr4:38690357-38690669(+)$1	312	199	206	12.3235
eemmmme	chr12:133372587-133372834(-)$1	247	204	211	13.0588
Fffffff	chr17:7751511-7751775(+)$1	264	19	26	16.8088
[eeeee!	chr12:121439347-121439605(+)$1	258	92	99	13.2794
ggggggg	chr2:74668932-74669178(-)$1	246	29	36	13.2058
ff!!bbo	chr1:234742767-234743037(-)$1	270	79	86	13.2058
JJJJJFF	chr16:2162005-2162261(-)$1	256	73	80	12.6911
ll=====	chr1:236958794-236959052(+)$1	258	41	48	12.4705
FFFFJJJ	chr20:306926-307180(+)$1	254	6	13	13.2058
:::GGGG	chr16:9185417-9185657(+)$1	240	30	37	12.3970
e:dddd[	chr16:31720385-31720625(+)$1	240	128	135	12.9117
88hhhhh	chr16:89629412-89629651(+)$1	239	109	116	13.2058
hhhlllh	chr12:12870448-12870716(+)$1	268	5	12	12.4705
!dddd""	chr5:92919584-92919820(+)$1	236	59	66	12.5441
gggggg3	chr12:57039594-57039840(-)$1	246	134	141	16.8088
CCCeeee	chr2:71559434-71559713(+)$1	279	13	20	12.4705

#DB
)))((((	chr6:24357780-24358014(-)$1	1	107	114	12.3970
))..)).	chr3:48465378-48465599(-)$1	1	136	143	13.1323
)((((((	chr19:36303078-36303354(-)$1	1	235	242	16.8088
(((((((	chr1:234744856-234745064(-)$1	1	42	49	12.5441
))).(((	chr6:32940759-32940992(+)$1	1	176	183	13.2794
)..))).	chr1:211751524-211751777(-)$1	1	182	189	13.2794
)))))))	chr14:23450542-23450813(-)$1	1	63	70	16.8088
(((((.(	chr12:6602869-6603108(+)$1	1	153	160	12.3235
..((((.	chr16:30976162-30976428(+)$1	1	55	62	13.1323
)))))).	chr14:54417035-54417256(-)$1	1	117	124	16.8088
(((((..	chr10:79793524-79793765(+)$1	1	48	55	12.4705
(((((..	chr16:24551483-24551750(+)$1	1	6	13	16.8088
((((((.	chr14:21560249-21560479(-)$1	1	24	31	16.8088
.))))).	chr16:31469799-31470040(-)$1	1	39	46	12.1029
(((((((	chr16:67978398-67978646(-)$1	1	60	67	13.2058
.((((((	chr6:158516591-158516832(+)$1	1	108	115	12.4705
(((((..	chr5:1463564-1463808(-)$1	1	63	70	13.2058
(((((((	chr21:34922690-34922947(+)$1	1	30	37	12.6911
((((...	chr18:74091503-74091754(-)$1	1	131	138	12.4705
))))...	chr22:41832291-41832548(-)$1	1	249	256	12.7647
(..((((	chr2:74708905-74709255(-)$1	1	89	96	12.3235
.(((((.	chr19:18390849-18391078(-)$1	1	84	91	13.2058
.(((((.	chr16:70414906-70415148(-)$1	1	84	91	12.4705
.......	chr9:14775909-14776158(-)$1	1	71	78	12.6911
(((((((	chr8:11660463-11660733(+)$1	1	1	8	12.1764
(((((((	chr19:18391024-18391308(-)$1	1	67	74	12.1764
.((((..	chr16:67974053-67974300(-)$1	1	15	22	13.2794
)))))).	chr22:29445605-29445834(+)$1	1	40	47	16.8088
(((....	chr18:20716290-20716541(+)$1	1	35	42	16.8088
)))))))	chr16:70433037-70433278(-)$1	1	129	136	12.7647
.((((..	chr3:48465207-48465463(-)$1	1	0	7	13.1323
((((.((	chr14:105996099-105996361(+)$1	1	32	39	12.9117
(((((((	chr1:8418342-8418601(-)$1	1	82	89	13.1323
).((((.	chr3:10291016-10291292(+)$1	1	149	156	16.8088
.))))..	chr12:124017855-124018167(-)$1	1	40	47	13.2058
))))).)	chr14:23537452-23537725(-)$1	1	51	58	12.6176
).(((((	chr1:27320577-27320815(+)$1	1	48	55	12.5441
(((.((.	chr1:234744620-234744863(-)$1	1	160	167	13.2058
((.((((	chr6:170065224-170065509(-)$1	1	108	115	13.2058
(((((((	chr8:121823799-121824101(-)$1	1	46	53	13.2058
((....)	chr7:5427527-5427770(-)$1	1	112	119	13.2794
...))))	chr2:70057231-70057475(+)$1	1	103	110	12.7647
.))))))	chr3:49052295-49052533(+)$1	1	50	57	13.2794
)))))..	chr20:44519032-44519273(-)$1	1	108	115	12.4705
)).))))	chr6:32940421-32940665(+)$1	1	199	206	13.0588
.((((..	chr1:110884604-110884868(+)$1	1	173	180	12.4705
.((((..	chr7:1027997-1028240(+)$1	1	69	76	16.8088
(((((..	chr16:89267412-89267661(-)$1	1	41	48	13.0588
)).))).	chr16:30567152-30567399(-)$1	1	82	89	13.1323
)))))))	chr6:43752777-43753023(+)$1	1	108	115	12.7647
)))))))	chr16:30544217-30544459(-)$1	1	127	134	12.5441
...))))	chr1:55315310-55315539(-)$1	1	102	109	12.6176
))).)).	chr4:38690357-38690669(+)$1	1	199	206	12.3235
((....)	chr12:133372587-133372834(-)$1	1	204	211	13.0588
(((((((	chr17:7751511-7751775(+)$1	1	19	26	16.8088
.(((((.	chr12:121439347-121439605(+)$1	1	92	99	13.2794
(((((((	chr2:74668932-74669178(-)$1	1	29	36	13.2058
((..((.	chr1:234742767-234743037(-)$1	1	79	86	13.2058
)))))((	chr16:2162005-2162261(-)$1	1	73	80	12.6911
..)))))	chr1:236958794-236959052(+)$1	1	41	48	12.4705
(((((((	chr20:306926-307180(+)$1	1	6	13	13.2058
...((((	chr16:9185417-9185657(+)$1	1	30	37	12.3970
).((((.	chr16:31720385-31720625(+)$1	1	128	135	12.9117
..)))))	chr16:89629412-89629651(+)$1	1	109	116	13.2058
(((...)	chr12:12870448-12870716(+)$1	1	5	12	12.4705
.((((..	chr5:92919584-92919820(+)$1	1	59	66	12.5441
)))))).	chr12:57039594-57039840(-)$1	1	134	141	16.8088
(((((((	chr2:71559434-71559713(+)$1	1	13	20	12.4705

#PSSM
C : 0.82	U : 0.05	A : 0.04	c : 0.04	G : 0.02	
G : 0.77	U : 0.08	C : 0.07	A : 0.02	g : 0.02	
G : 0.79	U : 0.08	C : 0.04	A : 0.04	c : 0.02	
G : 0.88	C : 0.05	g : 0.02	U : 0.01	A : 0.01	
G : 0.88	C : 0.04	A : 0.04	g : 0.02	
C : 0.88	U : 0.04	A : 0.02	c : 0.02	G : 0.01	
C : 0.92	G : 0.02	c : 0.02	A : 0.01	

#score	915.4999999999982
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_UTR_m2_run2.nuc.txt

#NT
GGGGGUGGAGGGGGU	chr14:104163936-104164206(+)$1	270	85	100	20.2127
GGGGUGGGAGGCGGG	chr19:1472446-1472694(-)$1	248	95	110	22.5531
agggcgggaggggga	chr10:126848937-126849198(-)$1	261	29	44	20.7446
GGGGAGGAGGAGGGU	chr12:54679572-54679854(+)$1	282	68	83	15.8510
ggcuagggagguggg	chr9:101867329-101867617(+)$1	288	68	83	16.4893
GGGAAGGCAGGCGGG	chr14:105259023-105259305(-)$1	282	71	86	16.7021
GGGGUGGGAUGGAGG	chr17:79876228-79876504(-)$1	276	68	83	18.5106
GUGGGGGGAAGGGGA	chr17:7477151-7477420(+)$1	269	1	16	16.1702
GGGGAGGGAGGGUCC	chr11:554255-554541(+)$1	286	237	252	18.8297
GGGGUGGGGGUGGGG	chr8:67976907-67977263(+)$1	356	17	32	20.6382
CGGGACGGCGUGGGG	chr2:196522001-196522326(+)$1	325	79	94	15.4255
GGAGAGGGUGGGUGG	chr19:40737884-40738136(-)$1	252	62	77	17.6595
CUGGAGGGAGGGGGC	chr22:20004148-20004400(-)$1	252	113	128	19.1489
GAGGAGGGAGGCCGG	chr16:4664672-4664952(-)$1	280	118	133	17.7659
GGGGAGGGAUCGCGA	chr5:133340035-133340325(-)$1	290	111	126	15.7446
GGGGAGGGUGCGUGG	chr7:100170887-100171214(-)$1	327	138	153	18.6170
AUGGUGGGAGUGGGG	chr16:848002-848258(+)$1	256	101	116	16.1702
gggcggggagggggc	chr7:1570265-1570539(+)$1	274	3	18	20.2127
GGGGAGGAGGGCGGC	chr12:123464926-123465211(+)$1	285	29	44	16.3829
GGGGUUGUUGGGGGG	chr7:100171554-100171835(-)$1	281	227	242	14.8936
GGUGGGGGUGGGGGA	chr8:101963093-101963400(-)$1	307	71	86	16.8085
ggggaggggguuggg	chr22:50013553-50013838(-)$1	285	87	102	19.4680
GGGGAGGGAGUGCAG	chr6:150071219-150071508(+)$1	289	142	157	18.2978
ugggcgggggcgggg	chr6:15248990-15249268(+)$1	278	94	109	16.7021
AGGGAAGGUGGGGGU	chr19:1881824-1882122(-)$1	298	93	108	16.8085
GGGGAgggcggccgg	chr11:3013168-3013466(-)$1	298	21	36	18.7234
ggggaggggguggau	chr9:140445562-140445832(+)$1	270	49	64	17.4468
UGGCAGGGAGGAGGA	chr8:102217021-102217287(-)$1	266	6	21	15.3191
UGGGCUGGAGGUGGG	chr1:47695334-47695650(-)$1	316	82	97	15.2127
AGGGCUGGAGGGUGG	chr7:1577301-1577605(+)$1	304	94	109	15.6382
GGGGAGGGAGUGACG	chr5:179248492-179248805(+)$1	313	106	121	17.8723
ggggaagggggggga	chr1:155532314-155532655(-)$1	341	14	29	20.1063
gggaagggacgggug	chr16:67596184-67596450(-)$1	266	51	66	16.4893
GGGAAGGGAGGGGAA	chr7:106810076-106810343(+)$1	267	181	196	18.7234
AGAGGGGGAGGGGGG	chr2:61764977-61765280(-)$1	303	24	39	18.5106
GAGGAAGGAAGGGGG	chr8:71314178-71314456(-)$1	278	80	95	16.8085
GGGGCGGGAUGGGAG	chr19:18547563-18547871(-)$1	308	113	128	18.4042
GAGGAGGGCGUGGGG	chr16:1362024-1362260(+)$1	236	137	152	18.8297
cgcgggggaggggag	chr1:245026247-245026533(-)$1	286	167	182	14.6808
GCGUAGGGAGGCGGC	chr12:31477214-31477464(-)$1	250	49	64	15.3191
CGGUUGGGAGGGGGU	chr7:5569490-5569799(-)$1	309	287	302	16.8085
ggggcggggcggggc	chr9:139560088-139560356(+)$1	268	60	75	17.7659
GGGCAGAGAUGGGGC	chr22:50050733-50050966(-)$1	233	85	100	14.2553
GAGGAGAGAGGCGGU	chr2:242254729-242254978(-)$1	249	75	90	14.6808
GGGGAGGGAGGGGGU	chr11:61583465-61583742(-)$1	277	79	94	26.0638
AGGGAGGGCCUGGGG	chr16:2580595-2580934(+)$1	339	164	179	15.8510

#otherMatches

#Struct PSSM
hhhhhhhh]ccc]cc	chr9:139756705-139756967(-)$1	262	118	133	16.8085
f[accc$$$$$dddd	chr14:104163936-104164206(+)$1	270	85	100	20.2127
hhhhhHHHHHHHH:g	chr19:1472446-1472694(-)$1	248	95	110	22.5531
[a[ccc[aeeeee[a	chr10:126848937-126849198(-)$1	261	29	44	20.7446
xxxxxxxbb]a]a]a	chr12:54679572-54679854(+)$1	282	68	83	15.8510
[eeeee[dddd[fff	chr9:101867329-101867617(+)$1	288	68	83	16.4893
HHEEEEE{DDDDNNN	chr14:105259023-105259305(-)$1	282	71	86	16.7021
ggggg:::bb!!eee	chr17:79876228-79876504(-)$1	276	68	83	18.5106
:ggggggg[ddddmm	chr17:7477151-7477420(+)$1	269	1	16	16.1702
ggggggccclllccc	chr11:554255-554541(+)$1	286	237	252	18.8297
JJJJJJJBB{EEEEE	chr8:67976907-67977263(+)$1	356	17	32	20.6382
dddd]ccc22fffff	chr2:196522001-196522326(+)$1	325	79	94	15.4255
]bb::ccc[dddd##	chr19:40737884-40738136(-)$1	252	62	77	17.6595
f[bb[a[a[ddddmm	chr22:20004148-20004400(-)$1	252	113	128	19.1489
4444bb]bb]eeeee	chr16:4664672-4664952(-)$1	280	118	133	17.7659
hhhhh::::eeeee!	chr5:133340035-133340325(-)$1	290	111	126	15.7446
DDDD{BB{CCChhhh	chr7:100170887-100171214(-)$1	327	138	153	18.6170
333dddd::eeeee[	chr16:848002-848258(+)$1	256	101	116	16.1702
KKCCC{FFFFFF{CC	chr7:1570265-1570539(+)$1	274	3	18	20.2127
[==============	chr12:123464926-123465211(+)$1	285	29	44	16.3829
HHHHHHZZZCCC}A}	chr7:100171554-100171835(-)$1	281	227	242	14.8936
]ffffff]a]eeeee	chr8:101963093-101963400(-)$1	307	71	86	16.8085
KHHHHHHHHDDDDDD	chr22:50013553-50013838(-)$1	285	87	102	19.4680
JJJJJJJBB}DDDDD	chr6:150071219-150071508(+)$1	289	142	157	18.2978
:::dddd[cccmmmm	chr6:15248990-15249268(+)$1	278	94	109	16.7021
:DDDD{GGGGGGGKK	chr19:1881824-1882122(-)$1	298	93	108	16.8085
hhh####ffffff!!	chr11:3013168-3013466(-)$1	298	21	36	18.7234
EEE{BBKKDDDD:::	chr9:140445562-140445832(+)$1	270	49	64	17.4468
IIIIIIIHHHHHHHH	chr8:102217021-102217287(-)$1	266	6	21	15.3191
dddd]eeeee]dddd	chr1:47695334-47695650(-)$1	316	82	97	15.2127
CC{BBCCCKKEEEEE	chr7:1577301-1577605(+)$1	304	94	109	15.6382
hha22bb22eeeeef	chr5:179248492-179248805(+)$1	313	106	121	17.8723
dd:::::::::::::	chr1:155532314-155532655(-)$1	341	14	29	20.1063
:::::::::a[ccc[	chr16:67596184-67596450(-)$1	266	51	66	16.4893
{BB::::::::::::	chr7:106810076-106810343(+)$1	267	181	196	18.7234
:::JJJJJJJJJJJJ	chr2:61764977-61765280(-)$1	303	24	39	18.5106
EEEDDDDKKJJJJJJ	chr8:71314178-71314456(-)$1	278	80	95	16.8085
a[iiiiiiiii''''	chr19:18547563-18547871(-)$1	308	113	128	18.4042
ffffff:::FFFFFF	chr16:1362024-1362260(+)$1	236	137	152	18.8297
c[ammmma]ccc22d	chr1:245026247-245026533(-)$1	286	167	182	14.6808
ffbb[gggggggnnn	chr12:31477214-31477464(-)$1	250	49	64	15.3191
iiiii]ccc]bb]ff	chr7:5569490-5569799(-)$1	309	287	302	16.8085
]hhhhhhhh]fffff	chr9:139560088-139560356(+)$1	268	60	75	17.7659
eee"""ffffff[cc	chr22:50050733-50050966(-)$1	233	85	100	14.2553
C}EEEEE:FFFFFFD	chr2:242254729-242254978(-)$1	249	75	90	14.6808
mmmmccc::GGGGGG	chr11:61583465-61583742(-)$1	277	79	94	26.0638
ma]dddd]dddd:HH	chr16:2580595-2580934(+)$1	339	164	179	15.8510

#DB
)))))))).))).))	chr9:139756705-139756967(-)$1	1	118	133	16.8085
(.((((.....((((	chr14:104163936-104164206(+)$1	1	85	100	20.2127
)))))((((((((.(	chr19:1472446-1472694(-)$1	1	95	110	22.5531
.(.(((.((((((.(	chr10:126848937-126849198(-)$1	1	29	44	20.7446
.......)).).).)	chr12:54679572-54679854(+)$1	1	68	83	15.8510
.(((((.((((.(((	chr9:101867329-101867617(+)$1	1	68	83	16.4893
(((((((.((((...	chr14:105259023-105259305(-)$1	1	71	86	16.7021
)))))...((..(((	chr17:79876228-79876504(-)$1	1	68	83	18.5106
.(((((((.((((..	chr17:7477151-7477420(+)$1	1	1	16	16.1702
(((((((((...)))	chr11:554255-554541(+)$1	1	237	252	18.8297
(((((((((.(((((	chr8:67976907-67977263(+)$1	1	17	32	20.6382
)))).)))..)))))	chr2:196522001-196522326(+)$1	1	79	94	15.4255
.))..(((.((((..	chr19:40737884-40738136(-)$1	1	62	77	17.6595
(.((.(.(.((((..	chr22:20004148-20004400(-)$1	1	113	128	19.1489
....)).)).)))))	chr16:4664672-4664952(-)$1	1	118	133	17.7659
)))))....(((((.	chr5:133340035-133340325(-)$1	1	111	126	15.7446
((((.((.(((((((	chr7:100170887-100171214(-)$1	1	138	153	18.6170
...))))..(((((.	chr16:848002-848258(+)$1	1	101	116	16.1702
..(((.((((((.((	chr7:1570265-1570539(+)$1	1	3	18	20.2127
.((((((((((((((	chr12:123464926-123465211(+)$1	1	29	44	16.3829
))))))...))).).	chr7:100171554-100171835(-)$1	1	227	242	14.8936
.)))))).).)))))	chr8:101963093-101963400(-)$1	1	71	86	16.8085
.((((((((((((((	chr22:50013553-50013838(-)$1	1	87	102	19.4680
))))))))).)))))	chr6:150071219-150071508(+)$1	1	142	157	18.2978
...((((.(((....	chr6:15248990-15249268(+)$1	1	94	109	16.7021
.((((.(((((((..	chr19:1881824-1882122(-)$1	1	93	108	16.8085
(((....((((((..	chr11:3013168-3013466(-)$1	1	21	36	18.7234
(((.((..((((...	chr9:140445562-140445832(+)$1	1	49	64	17.4468
(((((((((((((((	chr8:102217021-102217287(-)$1	1	6	21	15.3191
)))).))))).))))	chr1:47695334-47695650(-)$1	1	82	97	15.2127
((.(((((..(((((	chr7:1577301-1577605(+)$1	1	94	109	15.6382
)))..))..)))))(	chr5:179248492-179248805(+)$1	1	106	121	17.8723
)).............	chr1:155532314-155532655(-)$1	1	14	29	20.1063
.........(.(((.	chr16:67596184-67596450(-)$1	1	51	66	16.4893
.((............	chr7:106810076-106810343(+)$1	1	181	196	18.7234
...((((((((((((	chr2:61764977-61765280(-)$1	1	24	39	18.5106
(((((((..((((((	chr8:71314178-71314456(-)$1	1	80	95	16.8085
(.(((((((((....	chr19:18547563-18547871(-)$1	1	113	128	18.4042
))))))...))))))	chr16:1362024-1362260(+)$1	1	137	152	18.8297
(.(....).)))..)	chr1:245026247-245026533(-)$1	1	167	182	14.6808
))((.(((((((...	chr12:31477214-31477464(-)$1	1	49	64	15.3191
))))).))).)).))	chr7:5569490-5569799(-)$1	1	287	302	16.8085
.)))))))).)))))	chr9:139560088-139560356(+)$1	1	60	75	17.7659
(((...((((((.((	chr22:50050733-50050966(-)$1	1	85	100	14.2553
).))))).(((((((	chr2:242254729-242254978(-)$1	1	75	90	14.6808
....)))..((((((	chr11:61583465-61583742(-)$1	1	79	94	26.0638
.).)))).)))).))	chr16:2580595-2580934(+)$1	1	164	179	15.8510

#PSSM
G : 0.57	g : 0.14	A : 0.10	C : 0.06	U : 0.04	a : 0.02	u : 0.02	c : 0.02	
G : 0.61	g : 0.21	A : 0.08	U : 0.06	C : 0.02	
G : 0.72	g : 0.17	c : 0.04	A : 0.04	U : 0.02	
G : 0.65	g : 0.14	A : 0.04	C : 0.04	U : 0.04	u : 0.02	c : 0.02	a : 0.02	
A : 0.48	U : 0.12	G : 0.10	a : 0.10	c : 0.06	C : 0.06	g : 0.04	
G : 0.59	g : 0.21	U : 0.08	A : 0.06	C : 0.02	a : 0.02	
G : 0.72	g : 0.23	A : 0.04	
G : 0.68	g : 0.23	A : 0.04	C : 0.02	U : 0.02	
A : 0.53	a : 0.10	U : 0.10	g : 0.10	G : 0.06	C : 0.06	c : 0.02	
G : 0.61	g : 0.19	U : 0.08	A : 0.04	c : 0.04	C : 0.02	
G : 0.55	g : 0.17	U : 0.14	C : 0.04	u : 0.04	A : 0.02	c : 0.02	
G : 0.59	g : 0.17	C : 0.12	u : 0.04	c : 0.02	A : 0.02	U : 0.02	
G : 0.55	g : 0.21	U : 0.08	A : 0.06	C : 0.06	c : 0.02	
G : 0.65	g : 0.17	A : 0.06	C : 0.04	a : 0.04	u : 0.02	
G : 0.40	C : 0.12	U : 0.12	g : 0.12	A : 0.10	a : 0.04	c : 0.04	u : 0.02	

#score	827.1276595744686
#seq	47
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_CDS_m3_run1.nuc.txt

#NT
CAGGUGG	chr7:91728942-91729193(+)$1	251	204	211	13.2307
AAGGUGA	chr7:140082128-140082447(-)$1	319	94	101	13.3076
CAGGUGA	chr6:32125333-32125595(+)$1	262	161	168	17.0769
CAGCUGA	chr1:19441857-19442143(-)$1	286	43	50	12.9230
CAGGUGA	chr12:56577544-56577783(-)$1	239	136	143	17.0769
CUGGUGA	chr16:720175-720419(+)$1	244	47	54	12.8461
CAGGUAA	chr6:32088665-32088904(-)$1	239	136	143	13.4615
GAGGUGA	chr19:6750201-6750462(+)$1	261	238	245	12.9230
CAGGUGA	chr1:22033229-22033462(-)$1	233	98	105	17.0769
CAGGAGA	chrX:70787403-70787633(+)$1	230	92	99	12.9999
CAGGGGA	chr11:290840-291090(+)$1	250	35	42	13.0769
CAGCUGA	chr21:46912497-46912727(+)$1	230	76	83	12.9230
CAGGUGC	chr15:41803643-41803880(-)$1	237	101	108	13.0769
AAGGUGA	chr17:38182395-38182658(-)$1	263	11	18	13.3076
CAGGUAA	chr5:145859517-145859793(+)$1	276	220	227	13.4615
CAGGUUA	chr2:15651235-15651461(-)$1	226	93	100	13.3076
CAGGGGA	chr15:28420657-28420899(-)$1	242	94	101	13.0769
CAGCUGA	chr6:43591617-43591882(-)$1	265	195	202	12.9230
AAGGUGA	chr1:150526733-150526980(+)$1	247	207	214	13.3076
CUGGUGA	chr16:70296235-70296501(-)$1	266	223	230	12.8461
CAGCUGA	chr16:70590073-70590336(+)$1	263	14	21	12.9230
CAGGUUA	chr19:2040033-2040260(-)$1	227	179	186	13.3076
CAGGUGU	chr9:111663823-111664053(-)$1	230	115	122	12.9999
CAGGUGU	chr1:21938420-21938640(-)$1	220	119	126	12.9999
CAGGGGA	chr22:22322892-22323144(-)$1	252	16	23	13.0769
AAGGUGA	chr16:67914766-67914991(+)$1	225	124	131	13.3076
CAGGUGA	chr11:72533785-72534062(+)$1	277	218	225	17.0769
CAGGUGA	chr12:132516543-132516774(+)$1	231	148	155	17.0769
CAGGUAA	chr1:1247140-1247405(-)$1	265	5	12	13.4615
GAGGUGA	chr21:46924318-46924537(+)$1	219	27	34	12.9230
CAGGUGA	chr6:31934997-31935252(+)$1	255	154	161	17.0769
CAGGUAA	chr16:58621004-58621237(-)$1	233	75	82	13.4615
CAGGUGA	chr11:64108970-64109195(+)$1	225	97	104	17.0769
CAGGUGG	chr15:89806549-89806789(+)$1	240	97	104	13.2307
CAGGUGC	chr1:155895322-155895531(-)$1	209	15	22	13.0769
CAGGUGG	chr9:130884550-130884799(-)$1	249	175	182	13.2307
AAGGUGA	chr17:7811188-7811432(+)$1	244	32	39	13.3076
CAGGUGA	chr6:29576276-29576525(-)$1	249	145	152	17.0769
CAGGUCA	chr7:120765773-120765995(+)$1	222	170	177	13.1538
AAGGUGA	chr19:19114876-19115153(-)$1	277	174	181	13.3076
CUGGUGA	chr17:76121178-76121466(-)$1	288	136	143	12.8461
CAGGUGG	chr6:30888952-30889177(+)$1	225	127	134	13.2307
CAGGUGA	chr5:130857051-130857316(-)$1	265	150	157	17.0769
CAGGUUA	chr1:54870430-54870704(-)$1	274	98	105	13.3076
CAGGAGA	chr1:26595903-26596205(+)$1	302	80	87	12.9999
CAGGUGA	chr2:27558364-27558603(-)$1	239	136	143	17.0769
CAGGUCA	chrX:48672749-48673045(+)$1	296	221	228	13.1538
caggcga	chr16:15784896-15785159(+)$1	263	1	8	12.9230
CAGGUGC	chr8:145656369-145656616(-)$1	247	34	41	13.0769
CUGGUGA	chr5:134146818-134147073(+)$1	255	135	142	12.8461
AAGGUGA	chr17:76118675-76118920(-)$1	245	175	182	13.3076
CAGGUAA	chr3:58062860-58063116(+)$1	256	158	165	13.4615
CAGGAGA	chr14:102476985-102477262(+)$1	277	244	251	12.9999
CAGUUGA	chr7:12400984-12401225(-)$1	241	225	232	12.6153
CAGGUGA	chr16:22335574-22335834(+)$1	260	27	34	17.0769
CAGGCGA	chr12:133244856-133245140(-)$1	284	168	175	12.9230
CAGGUGG	chr15:28358619-28358854(-)$1	235	49	56	13.2307
CAGGGGA	chr2:27258683-27259016(+)$1	333	151	158	13.0769
CUGGUGA	chr1:203025148-203025379(+)$1	231	132	139	12.8461
CAGGUUA	chr17:36873009-36873266(+)$1	257	222	229	13.3076
CAGGUAA	chrX:65423252-65423515(+)$1	263	164	171	13.4615
CAGGUGA	chr17:79864621-79864866(-)$1	245	5	12	17.0769
CAGGUGA	chr22:23596024-23596267(+)$1	243	177	184	17.0769
CAGGUGA	chr15:91456050-91456296(+)$1	246	168	175	17.0769

#otherMatches

#Struct PSSM
EEBB{DD	chr1:160267033-160267256(-)$1	223	25	32	12.9230
ZZCCCCC	chr7:91728942-91729193(+)$1	251	204	211	13.2307
44fffff	chr7:140082128-140082447(-)$1	319	94	101	13.3076
hhhhhh[	chr6:32125333-32125595(+)$1	262	161	168	17.0769
2eeeee3	chr1:19441857-19442143(-)$1	286	43	50	12.9230
qqqqqqg	chr12:56577544-56577783(-)$1	239	136	143	17.0769
dddd[bb	chr16:720175-720419(+)$1	244	47	54	12.8461
eeee22d	chr6:32088665-32088904(-)$1	239	136	143	13.4615
ppdddd4	chr19:6750201-6750462(+)$1	261	238	245	12.9230
gggggg[	chr1:22033229-22033462(-)$1	233	98	105	17.0769
dddd]dd	chrX:70787403-70787633(+)$1	230	92	99	12.9999
FF{BB{B	chr11:290840-291090(+)$1	250	35	42	13.0769
gg]bb33	chr21:46912497-46912727(+)$1	230	76	83	12.9230
ccc[a[c	chr15:41803643-41803880(-)$1	237	101	108	13.0769
d[ggggg	chr17:38182395-38182658(-)$1	263	11	18	13.3076
HHHHDDD	chr5:145859517-145859793(+)$1	276	220	227	13.4615
nnnnccc	chr2:15651235-15651461(-)$1	226	93	100	13.3076
dd22bb3	chr15:28420657-28420899(-)$1	242	94	101	13.0769
lllccc3	chr6:43591617-43591882(-)$1	265	195	202	12.9230
::fffff	chr1:150526733-150526980(+)$1	247	207	214	13.3076
fffff44	chr16:70296235-70296501(-)$1	266	223	230	12.8461
:::::::	chr16:70590073-70590336(+)$1	263	14	21	12.9230
YYGGGGG	chr19:2040033-2040260(-)$1	227	179	186	13.3076
dmmmmdd	chr9:111663823-111664053(-)$1	230	115	122	12.9999
c[hhhhh	chr1:21938420-21938640(-)$1	220	119	126	12.9999
ggggggg	chr22:22322892-22323144(-)$1	252	16	23	13.0769
:::BB}E	chr16:67914766-67914991(+)$1	225	124	131	13.3076
eDDDD}C	chr11:72533785-72534062(+)$1	277	218	225	17.0769
qqqccc:	chr12:132516543-132516774(+)$1	231	148	155	17.0769
::ccc!!	chr1:1247140-1247405(-)$1	265	5	12	13.4615
7777777	chr21:46924318-46924537(+)$1	219	27	34	12.9230
::ccc!!	chr6:31934997-31935252(+)$1	255	154	161	17.0769
eeeeeee	chr16:58621004-58621237(-)$1	233	75	82	13.4615
ggggbb[	chr11:64108970-64109195(+)$1	225	97	104	17.0769
:eeeeed	chr15:89806549-89806789(+)$1	240	97	104	13.2307
PPPBB{B	chr1:155895322-155895531(-)$1	209	15	22	13.0769
}JJJJJJ	chr9:130884550-130884799(-)$1	249	175	182	13.2307
GGGGGG{	chr17:7811188-7811432(+)$1	244	32	39	13.3076
:bb[hhh	chr6:29576276-29576525(-)$1	249	145	152	17.0769
bbddddt	chr7:120765773-120765995(+)$1	222	170	177	13.1538
::DDDD:	chr19:19114876-19115153(-)$1	277	174	181	13.3076
ddnnnnn	chr17:76121178-76121466(-)$1	288	136	143	12.8461
iiiiiii	chr6:30888952-30889177(+)$1	225	127	134	13.2307
^^^dddd	chr5:130857051-130857316(-)$1	265	150	157	17.0769
dddd:::	chr1:54870430-54870704(-)$1	274	98	105	13.3076
FFFFFMM	chr1:26595903-26596205(+)$1	302	80	87	12.9999
((bb[dd	chr2:27558364-27558603(-)$1	239	136	143	17.0769
b:FFFFF	chrX:48672749-48673045(+)$1	296	221	228	13.1538
ddddppp	chr16:15784896-15785159(+)$1	263	1	8	12.9230
ffffff[	chr8:145656369-145656616(-)$1	247	34	41	13.0769
dffffff	chr5:134146818-134147073(+)$1	255	135	142	12.8461
22bb]bb	chr17:76118675-76118920(-)$1	245	175	182	13.3076
eeee333	chr3:58062860-58063116(+)$1	256	158	165	13.4615
DDD~~~~	chr14:102476985-102477262(+)$1	277	244	251	12.9999
~~~CCCY	chr7:12400984-12401225(-)$1	241	225	232	12.6153
b[bbooo	chr16:22335574-22335834(+)$1	260	27	34	17.0769
ccCCC~~	chr12:133244856-133245140(-)$1	284	168	175	12.9230
EEEE{CC	chr15:28358619-28358854(-)$1	235	49	56	13.2307
lleeeee	chr2:27258683-27259016(+)$1	333	151	158	13.0769
KKBB{CC	chr1:203025148-203025379(+)$1	231	132	139	12.8461
bbooooo	chr17:36873009-36873266(+)$1	257	222	229	13.3076
d]ccc::	chrX:65423252-65423515(+)$1	263	164	171	13.4615
qqqqqqq	chr17:79864621-79864866(-)$1	245	5	12	17.0769
eoooooo	chr22:23596024-23596267(+)$1	243	177	184	17.0769
e]fffff	chr15:91456050-91456296(+)$1	246	168	175	17.0769

#DB
((((.((	chr1:160267033-160267256(-)$1	1	25	32	12.9230
..)))))	chr7:91728942-91729193(+)$1	1	204	211	13.2307
..)))))	chr7:140082128-140082447(-)$1	1	94	101	13.3076
((((((.	chr6:32125333-32125595(+)$1	1	161	168	17.0769
.))))).	chr1:19441857-19442143(-)$1	1	43	50	12.9230
......)	chr12:56577544-56577783(-)$1	1	136	143	17.0769
((((.((	chr16:720175-720419(+)$1	1	47	54	12.8461
))))..)	chr6:32088665-32088904(-)$1	1	136	143	13.4615
..)))).	chr19:6750201-6750462(+)$1	1	238	245	12.9230
((((((.	chr1:22033229-22033462(-)$1	1	98	105	17.0769
)))).))	chrX:70787403-70787633(+)$1	1	92	99	12.9999
((.((.(	chr11:290840-291090(+)$1	1	35	42	13.0769
)).))..	chr21:46912497-46912727(+)$1	1	76	83	12.9230
(((.(.(	chr15:41803643-41803880(-)$1	1	101	108	13.0769
(.(((((	chr17:38182395-38182658(-)$1	1	11	18	13.3076
)))))))	chr5:145859517-145859793(+)$1	1	220	227	13.4615
....)))	chr2:15651235-15651461(-)$1	1	93	100	13.3076
))..)).	chr15:28420657-28420899(-)$1	1	94	101	13.0769
...))).	chr6:43591617-43591882(-)$1	1	195	202	12.9230
..(((((	chr1:150526733-150526980(+)$1	1	207	214	13.3076
)))))..	chr16:70296235-70296501(-)$1	1	223	230	12.8461
.......	chr16:70590073-70590336(+)$1	1	14	21	12.9230
..)))))	chr19:2040033-2040260(-)$1	1	179	186	13.3076
(....))	chr9:111663823-111664053(-)$1	1	115	122	12.9999
(.(((((	chr1:21938420-21938640(-)$1	1	119	126	12.9999
(((((((	chr22:22322892-22323144(-)$1	1	16	23	13.0769
...)).)	chr16:67914766-67914991(+)$1	1	124	131	13.3076
))))).)	chr11:72533785-72534062(+)$1	1	218	225	17.0769
...))).	chr12:132516543-132516774(+)$1	1	148	155	17.0769
..(((..	chr1:1247140-1247405(-)$1	1	5	12	13.4615
.......	chr21:46924318-46924537(+)$1	1	27	34	12.9230
..(((..	chr6:31934997-31935252(+)$1	1	154	161	17.0769
))(((((	chr16:58621004-58621237(-)$1	1	75	82	13.4615
((((((.	chr11:64108970-64109195(+)$1	1	97	104	17.0769
.((((((	chr15:89806549-89806789(+)$1	1	97	104	13.2307
...((.(	chr1:155895322-155895531(-)$1	1	15	22	13.0769
.))))))	chr9:130884550-130884799(-)$1	1	175	182	13.2307
((((((.	chr17:7811188-7811432(+)$1	1	32	39	13.3076
.((.(((	chr6:29576276-29576525(-)$1	1	145	152	17.0769
((((((.	chr7:120765773-120765995(+)$1	1	170	177	13.1538
..)))).	chr19:19114876-19115153(-)$1	1	174	181	13.3076
((.....	chr17:76121178-76121466(-)$1	1	136	143	12.8461
)))))))	chr6:30888952-30889177(+)$1	1	127	134	13.2307
...))))	chr5:130857051-130857316(-)$1	1	150	157	17.0769
))))...	chr1:54870430-54870704(-)$1	1	98	105	13.3076
(((((..	chr1:26595903-26596205(+)$1	1	80	87	12.9999
..((.((	chr2:27558364-27558603(-)$1	1	136	143	17.0769
).)))))	chrX:48672749-48673045(+)$1	1	221	228	13.1538
((((...	chr16:15784896-15785159(+)$1	1	1	8	12.9230
((((((.	chr8:145656369-145656616(-)$1	1	34	41	13.0769
)))))))	chr5:134146818-134147073(+)$1	1	135	142	12.8461
..)).))	chr17:76118675-76118920(-)$1	1	175	182	13.3076
))))...	chr3:58062860-58063116(+)$1	1	158	165	13.4615
)))....	chr14:102476985-102477262(+)$1	1	244	251	12.9999
...))).	chr7:12400984-12401225(-)$1	1	225	232	12.6153
(.((...	chr16:22335574-22335834(+)$1	1	27	34	17.0769
)))))..	chr12:133244856-133245140(-)$1	1	168	175	12.9230
((((.((	chr15:28358619-28358854(-)$1	1	49	56	13.2307
..)))))	chr2:27258683-27259016(+)$1	1	151	158	13.0769
..((.((	chr1:203025148-203025379(+)$1	1	132	139	12.8461
((.....	chr17:36873009-36873266(+)$1	1	222	229	13.3076
).)))..	chrX:65423252-65423515(+)$1	1	164	171	13.4615
.......	chr17:79864621-79864866(-)$1	1	5	12	17.0769
(......	chr22:23596024-23596267(+)$1	1	177	184	17.0769
).)))))	chr15:91456050-91456296(+)$1	1	168	175	17.0769

#PSSM
C : 0.84	A : 0.10	G : 0.03	c : 0.01	
A : 0.90	U : 0.07	a : 0.01	
G : 0.98	g : 0.01	
G : 0.89	C : 0.07	g : 0.01	U : 0.01	
U : 0.86	G : 0.06	A : 0.04	c : 0.01	C : 0.01	
G : 0.79	A : 0.09	U : 0.06	C : 0.03	g : 0.01	
A : 0.83	G : 0.07	C : 0.04	U : 0.03	a : 0.01	

#score	908.3846153846141
#seq	65
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_UTR_m3_run1.nuc.txt

#NT
gccgccgccgccgccgccgccgccgU	chr19:1407635-1407864(+)$1	229	1	27	22.3000
GGCGGCGGCCCCCGCGUCCCGUGCCU	chr6:111136184-111136425(-)$1	241	42	68	21.8000
CGCCGCGAGCCCCGCCCGCCUGUCCU	chr10:49515036-49515271(+)$1	235	68	94	16.3000
ccccgcgcccccaguccccgcguccc	chr19:56152188-56152433(+)$1	245	213	239	19.9000
GGGAGCGGCCCCGGCGCCCCGAAGCC	chr3:195635535-195635822(-)$1	287	10	36	14.7000
AGCGCUGACCCCGGCCCCUACCUCCG	chr19:12831762-12832015(-)$1	253	182	208	15.4000
UGCCCCUGCCCCGGCACCCCCCACCU	chr19:3637677-3637973(-)$1	296	198	224	16.2000
GCCCGCGCCGCCGCCACCAACCUCCG	chr22:20105251-20105517(+)$1	266	7	33	17.4000
CGCGCCGGCAUccgcccgccgggccg	chr8:145687999-145688258(-)$1	259	185	211	17.1000
ggcggcgcccccggcacccccgcccA	chr9:131452166-131452408(+)$1	242	201	227	32.4000
ggcgggggggccAGCGACCGCAGCCG	chr7:77166729-77166971(+)$1	242	93	119	15.5000
cgcggUGUCCGCGGCAGCGCCGCCCU	chr1:150946810-150947062(-)$1	252	215	241	21.5000
CCUGGCGAGCCCUGCGCGCCGGCCCC	chr17:73150128-73150384(-)$1	256	109	135	17.3000
CCCGGCGCUCCGGGCAGCACCGGCCG	chr20:32254953-32255214(-)$1	261	137	163	23.3000
CGCCUGCCGCCCCGCGACCCCGACCG	chr10:71078477-71078750(+)$1	273	195	221	15.0000
UGCGCCGCCUCGCGCAGCUCCGCCUg	chr7:5460900-5461142(-)$1	242	30	56	15.0000
CGCUGCGCCGCUCGCUCCGCCCCCCG	chr10:43892090-43892296(-)$1	206	12	38	19.6000
gccccagacgccggcggccgcggccc	chr9:138903201-138903464(-)$1	263	42	68	17.5000
ACCCGCGCUCCCUCCGCCGCCGCCGC	chr6:53213462-53213699(-)$1	237	17	43	17.4000
cgcgccgggcucggccccUCCCCCUC	chr1:245026171-245026404(-)$1	233	59	85	15.9000
Agcggggcggcuggcgccgggggccg	chr2:99061287-99061554(+)$1	267	224	250	19.1000
GACGGUGACCCCACCCCCCCCCGCCC	chr19:18118884-18119192(+)$1	308	33	59	17.6000
CUGGGCGCGGCCGGCGCUGCAGACCC	chr17:27224484-27224745(-)$1	261	73	99	15.2000
cgcugggcggcgggcggcgcggcccg	chr6:111196679-111196929(+)$1	250	16	42	18.0000
GCCGGCAGCGGCGGCACCGGCGGCCU	chr16:4400927-4401215(-)$1	288	141	167	18.1000
cgcgggguccgcggcgcgcccggccc	chr19:15442613-15442854(-)$1	241	180	206	24.4000
ggcggcgcccccgggcggacggggcc	chr3:128211665-128211990(+)$1	325	92	118	17.1000
CGCGGCGCCCCGGGAGGUGGCGGCCU	chr11:64073718-64074009(+)$1	291	62	88	18.2000
GGGCGCGACCACCCGGCCGCCGGCCG	chr3:195622185-195622431(-)$1	246	62	88	15.0000
UGCGCCGCCUCGCGCAGCUCCGCCUg	chr7:5461005-5461254(-)$1	249	142	168	15.0000
GCCGGUGCCCUCCGCAGGCCGGGCCU	chr1:1189844-1190084(-)$1	240	185	211	17.1000
GGCGGGCCGCCGGGCGCCCCCGGGUC	chr2:241499874-241500123(-)$1	249	109	135	16.3000
CCCGGCGCUCCGGGCAGCACCGGCCG	chr20:32254878-32255109(-)$1	231	32	58	23.3000
CGCGGAGCCGCUGGGCCCCGGGGCUC	chr7:106810072-106810340(+)$1	268	56	82	14.6000
CCCGGCGCGCCUCGCCCGGCUGCCCG	chr11:3013117-3013362(-)$1	245	121	147	18.7000
gcccgcgccgccgccgccgccgcccg	chr2:240322470-240322754(-)$1	284	184	210	27.4000
cgccgcccgcccguugccgccgccgc	chr1:29508215-29508471(-)$1	256	100	126	14.9000
cgccggccccccuccccccccgcccu	chr2:38977858-38978140(-)$1	282	54	80	19.5000
gcccgggcccgcugcagccgccgccg	chr2:10443014-10443268(+)$1	254	211	237	17.1000
cccgccgcccgcggggccccggcccg	chr1:1208788-1209024(-)$1	236	97	123	25.1000
ggcggcgcccgcggccccucccccgg	chr8:103666215-103666493(-)$1	278	7	33	24.4000
GCCGGGGUCCACGGCGCCCGGGCCUG	chr1:19810756-19811011(-)$1	255	90	116	19.3000
GUCGCCGCCGCCUCCGCGCCGGGACG	chr2:200323111-200323431(-)$1	320	96	122	15.4000
GGCGGCGGUCGCGGCGCCUGCAGCUC	chr12:96793066-96793328(-)$1	262	42	68	16.7000
ggcggcggcggcggcggcggcggcCG	chr15:23086194-23086452(-)$1	258	64	90	23.9000
gccgccgccgccgccgccgccgccgc	chrX:20284801-20285049(-)$1	248	182	208	22.9000
cccgccgcccgcggggccccggcccg	chr1:1208660-1208943(-)$1	283	16	42	25.1000
cucggcgcccgcgcguccccgccgcg	chr12:112036717-112036953(-)$1	236	13	39	14.5000
cucgcccccccccccaccccccgccg	chr17:27717826-27718072(+)$1	246	11	37	19.4000

#otherMatches

#Struct PSSM
eeeeBB}HHHHHHHH}CCCffffff[	chr12:31477505-31477784(-)$1	279	213	239	17.8000
cc!!ccc[dddd!!a[dddd[eeeee	chr19:1407635-1407864(+)$1	229	1	27	22.3000
eee]bb]bbbb==========cccdd	chr6:111136184-111136425(-)$1	241	42	68	21.8000
c]dddddddd[==========[ccc[	chr10:49515036-49515271(+)$1	235	68	94	16.3000
AYYAFFFFFF______EEEEE}DDDD	chr19:56152188-56152433(+)$1	245	213	239	19.9000
GGG:CCC{DDDDHHHHHHHHPPPPPP	chr3:195635535-195635822(-)$1	287	10	36	14.7000
ii]a22bbdddddddd7777777eee	chr19:12831762-12832015(-)$1	253	182	208	15.4000
rrrrrrrccc22bb]dddd]a22fff	chr19:3637677-3637973(-)$1	296	198	224	16.2000
B{BB{GGGGGGGKKEEEEE::fffff	chr22:20105251-20105517(+)$1	266	7	33	17.4000
b]ccc22bb]ffffffFFFFFF}EEE	chr8:145687999-145688258(-)$1	259	185	211	17.1000
IIIIIII:::::cccooooooccc:G	chr9:131452166-131452408(+)$1	242	201	227	32.4000
[dddd!!aooooooa22dddd]ccc]	chr7:77166729-77166971(+)$1	242	93	119	15.5000
JJJJJJJJJJ}BB}JJJJJJJJJJBB	chr1:150946810-150947062(-)$1	252	215	241	21.5000
22ddddiiiiiiiiibb[ffffff""	chr17:73150128-73150384(-)$1	256	109	135	17.3000
b22eeeee333dddd]eeeeeccc[b	chr20:32254953-32255214(-)$1	261	137	163	23.3000
33ccc]a22eeeeea22dddd::HHH	chr10:71078477-71078750(+)$1	273	195	221	15.0000
eeeeeooooooeeeeegggggggadd	chr7:5460900-5461142(-)$1	242	30	56	15.0000
CCC{BBcccffffff!!cccbb!!ac	chr10:43892090-43892296(-)$1	206	12	38	19.6000
{AEEEEE{A{CCC:eeeee[aooooo	chr9:138903201-138903464(-)$1	263	42	68	17.5000
{BB{BBDDDDKKBBBB{DDDDbb[bb	chr6:53213462-53213699(-)$1	237	17	43	17.4000
cooooooccc]bb]==========]a	chr1:245026171-245026404(-)$1	233	59	85	15.9000
obb]dddd]bb22iiiiiiiii]bb2	chr2:99061287-99061554(+)$1	267	224	250	19.1000
###ddddmmmmdddda22iiiiiiii	chr19:18118884-18119192(+)$1	308	33	59	17.6000
ccc22ccc]ccc]eeeeeDDDD}GGG	chr17:27224484-27224745(-)$1	261	73	99	15.2000
GGGeeeee[cccnnnnnccc]eeeee	chr6:111196679-111196929(+)$1	250	16	42	18.0000
gggg[a[bbmmmmbb333a]gggggg	chr16:4400927-4401215(-)$1	288	141	167	18.1000
ggggglllgggggggeeeee[dddd[	chr19:15442613-15442854(-)$1	241	180	206	24.4000
66666iiiiiiiii]ccc]a333fff	chr3:128211665-128211990(+)$1	325	92	118	17.1000
CCC{BBcccbbmmmmbb]ccc:ffff	chr11:64073718-64074009(+)$1	291	62	88	18.2000
bboooooobb22bb22bbggggggg2	chr3:195622185-195622431(-)$1	246	62	88	15.0000
eeeeeooooooeeeee::::EEEEE}	chr7:5461005-5461254(-)$1	249	142	168	15.0000
ppppppdddd]dddd:a[eeeeelll	chr1:1189844-1190084(-)$1	240	185	211	17.1000
gggggg]dddd]bb]ffffffggggg	chr2:241499874-241500123(-)$1	249	109	135	16.3000
fffffmmmmffffff:JJJJJJJJJJ	chr20:32254878-32255109(-)$1	231	32	58	23.3000
eaeeeeebbCCC{FFFFFF=======	chr7:106810072-106810340(+)$1	268	56	82	14.6000
5gggggggHHHHHHHHHHHHHHHHAD	chr11:3013117-3013362(-)$1	245	121	147	18.7000
GGGGGGGYYFFFFFF}DDDDFFFFFF	chr2:240322470-240322754(-)$1	284	184	210	27.4000
ccc]ccc]ddddCCC}DDDDYYBB}D	chr1:29508215-29508471(-)$1	256	100	126	14.9000
[ccccccwwwwwwwwwwwwwwccc33	chr2:38977858-38978140(-)$1	282	54	80	19.5000
ccc]ddddGGGGGGG}JJJJJJJJJJ	chr2:10443014-10443268(+)$1	254	211	237	17.1000
HHHHHHH:eeeeedddd"""cccmmm	chr1:1208788-1209024(-)$1	236	97	123	25.1000
JJJ:ggggggg!!ddddpppppppdd	chr8:103666215-103666493(-)$1	278	7	33	24.4000
bbccc]iiiiiiiii::::::EEEEE	chr1:19810756-19811011(-)$1	255	90	116	19.3000
fff[ccc[cccmmmmccc]cccffff	chr2:200323111-200323431(-)$1	320	96	122	15.4000
a]a]bb22ffffff]ffffff]gggg	chr12:96793066-96793328(-)$1	262	42	68	16.7000
mbb]eeeeeggggggg[ggggggg[d	chr15:23086194-23086452(-)$1	258	64	90	23.9000
ddddbb[dddd!!ccc[ggggggg""	chrX:20284801-20285049(-)$1	248	182	208	22.9000
HHHHHHH:eeeeedddd"""cccmmm	chr1:1208660-1208943(-)$1	283	16	42	25.1000
c[ccc[bb[bb[cccmmmmcccbb]b	chr12:112036717-112036953(-)$1	236	13	39	14.5000
"eeeee"""============[cccf	chr17:27717826-27718072(+)$1	246	11	37	19.4000

#DB
)))))).)))))))).)))((((((.	chr12:31477505-31477784(-)$1	1	213	239	17.8000
((..(((.((((..(.((((.(((((	chr19:1407635-1407864(+)$1	1	1	27	22.3000
))).)).))))(((((((((((((((	chr6:111136184-111136425(-)$1	1	42	68	21.8000
).))))((((.((((((((((.(((.	chr10:49515036-49515271(+)$1	1	68	94	16.3000
)..)))))))......))))).))))	chr19:56152188-56152433(+)$1	1	213	239	19.9000
(((.(((.((((((((((((......	chr3:195635535-195635822(-)$1	1	10	36	14.7000
)).)..)))))))))).......)))	chr19:12831762-12832015(-)$1	1	182	208	15.4000
.......)))..)).)))).)..)))	chr19:3637677-3637973(-)$1	1	198	224	16.2000
(.((.(((((((..(((((..(((((	chr22:20105251-20105517(+)$1	1	7	33	17.4000
).)))..)).)))))))))))).)))	chr8:145687999-145688258(-)$1	1	185	211	17.1000
))))))).....(((......))).)	chr9:131452166-131452408(+)$1	1	201	227	32.4000
.((((..(......)..)))).))).	chr7:77166729-77166971(+)$1	1	93	119	15.5000
)))))))))).)).))))))))))))	chr1:150946810-150947062(-)$1	1	215	241	21.5000
..)))))))))))))((.((((((..	chr17:73150128-73150384(-)$1	1	109	135	17.3000
)..)))))...)))).)))))(((.(	chr20:32254953-32255214(-)$1	1	137	163	23.3000
..))).)..))))))..))))..)))	chr10:71078477-71078750(+)$1	1	195	221	15.0000
(((((......)))))((((((((((	chr7:5460900-5461142(-)$1	1	30	56	15.0000
(((.(((((((((((..(((((..((	chr10:43892090-43892296(-)$1	1	12	38	19.6000
.((((((.(.(((.(((((.(.....	chr9:138903201-138903464(-)$1	1	42	68	17.5000
.((.((((((..((((.((((((.((	chr6:53213462-53213699(-)$1	1	17	43	17.4000
(......))).)).)))))))))).)	chr1:245026171-245026404(-)$1	1	59	85	15.9000
.)).)))).))..))))))))).)).	chr2:99061287-99061554(+)$1	1	224	250	19.1000
...((((....)))))..))))))))	chr19:18118884-18119192(+)$1	1	33	59	17.6000
)))..))).))).))))))))).)))	chr17:27224484-27224745(-)$1	1	73	99	15.2000
((((((((.(((.....))).)))))	chr6:111196679-111196929(+)$1	1	16	42	18.0000
((((.(.((....))...).))))))	chr16:4400927-4401215(-)$1	1	141	167	18.1000
(((((...)))))))(((((.((((.	chr19:15442613-15442854(-)$1	1	180	206	24.4000
.....))))))))).))).)...)))	chr3:128211665-128211990(+)$1	1	92	118	17.1000
(((.(((((((....)).))).((((	chr11:64073718-64074009(+)$1	1	62	88	18.2000
((......))..))..))))))))).	chr3:195622185-195622431(-)$1	1	62	88	15.0000
(((((......)))))....))))).	chr7:5461005-5461254(-)$1	1	142	168	15.0000
......)))).)))).(.(((((...	chr1:1189844-1190084(-)$1	1	185	211	17.1000
)))))).)))).)).)))))))))))	chr2:241499874-241500123(-)$1	1	109	135	16.3000
(((((....)))))).((((((((((	chr20:32254878-32255109(-)$1	1	32	58	23.3000
)))))))))(((.(((((((((((((	chr7:106810072-106810340(+)$1	1	56	82	14.6000
.)))))))))))))))))))))))))	chr11:3013117-3013362(-)$1	1	121	147	18.7000
)))))))..)))))).))))))))))	chr2:240322470-240322754(-)$1	1	184	210	27.4000
))).))).))))))).))))..)).)	chr1:29508215-29508471(-)$1	1	100	126	14.9000
.((((((..............)))..	chr2:38977858-38978140(-)$1	1	54	80	19.5000
))).))))))))))).))))))))))	chr2:10443014-10443268(+)$1	1	211	237	17.1000
(((((((.(((((((((...(((...	chr1:1208788-1209024(-)$1	1	97	123	25.1000
(((.(((((((..((((.......))	chr8:103666215-103666493(-)$1	1	7	33	24.4000
))))).)))))))))......(((((	chr1:19810756-19811011(-)$1	1	90	116	19.3000
(((.(((.(((....))).)))))))	chr2:200323111-200323431(-)$1	1	96	122	15.4000
).).))..)))))).)))))).))))	chr12:96793066-96793328(-)$1	1	42	68	16.7000
.)).)))))(((((((.(((((((.(	chr15:23086194-23086452(-)$1	1	64	90	23.9000
((((((.((((..(((.(((((((..	chrX:20284801-20285049(-)$1	1	182	208	22.9000
(((((((.(((((((((...(((...	chr1:1208660-1208943(-)$1	1	16	42	25.1000
(.(((.((.((.(((....))))).)	chr12:112036717-112036953(-)$1	1	13	39	14.5000
.(((((...((((((((((((.((((	chr17:27717826-27718072(+)$1	1	11	37	19.4000

#PSSM
G : 0.23	C : 0.21	c : 0.21	g : 0.19	A : 0.06	U : 0.06	
G : 0.30	g : 0.23	C : 0.18	c : 0.16	U : 0.06	u : 0.04	A : 0.02	
C : 0.46	c : 0.44	G : 0.06	g : 0.02	U : 0.02	
G : 0.38	g : 0.30	c : 0.14	C : 0.12	A : 0.02	U : 0.02	u : 0.02	
G : 0.40	g : 0.32	c : 0.14	C : 0.12	U : 0.02	
C : 0.40	c : 0.27	g : 0.14	U : 0.08	G : 0.06	a : 0.02	A : 0.02	
G : 0.48	g : 0.38	c : 0.06	C : 0.04	U : 0.02	A : 0.02	
c : 0.34	C : 0.30	G : 0.12	A : 0.10	g : 0.06	U : 0.04	a : 0.02	u : 0.02	
C : 0.36	c : 0.34	G : 0.12	g : 0.10	U : 0.08	
C : 0.38	c : 0.27	g : 0.16	G : 0.12	U : 0.04	A : 0.02	
C : 0.42	c : 0.27	g : 0.14	G : 0.06	U : 0.04	A : 0.04	u : 0.02	
c : 0.42	C : 0.36	G : 0.12	U : 0.06	u : 0.02	g : 0.02	
g : 0.34	G : 0.27	C : 0.18	U : 0.06	c : 0.04	A : 0.04	u : 0.04	a : 0.02	
G : 0.46	g : 0.30	c : 0.12	C : 0.10	u : 0.02	
C : 0.50	c : 0.32	g : 0.08	u : 0.04	G : 0.04	A : 0.02	
G : 0.25	g : 0.23	A : 0.18	c : 0.12	C : 0.10	a : 0.06	U : 0.02	u : 0.02	
C : 0.36	c : 0.34	G : 0.14	g : 0.10	A : 0.04	U : 0.02	
C : 0.42	c : 0.36	G : 0.10	g : 0.06	U : 0.04	u : 0.02	
C : 0.25	c : 0.23	G : 0.16	g : 0.14	U : 0.10	A : 0.06	a : 0.02	u : 0.02	
C : 0.42	c : 0.30	g : 0.12	G : 0.12	A : 0.04	
C : 0.38	c : 0.25	g : 0.16	G : 0.14	U : 0.04	A : 0.02	
G : 0.38	g : 0.34	C : 0.12	c : 0.08	A : 0.06	U : 0.02	
G : 0.25	c : 0.21	g : 0.18	C : 0.18	A : 0.08	U : 0.06	u : 0.02	
C : 0.52	c : 0.38	G : 0.04	g : 0.04	A : 0.02	
C : 0.44	c : 0.32	U : 0.14	g : 0.08	G : 0.02	
g : 0.25	G : 0.23	C : 0.18	U : 0.16	c : 0.12	A : 0.02	u : 0.02	

#score	942.6000000000014
#seq	50
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_UTR_m3_run2.nuc.txt

#NT
ggcggcccggc	chr22:22221688-22221981(-)$1	293	233	244	13.3921
CGGGGACCggc	chr11:63953576-63953843(+)$1	267	204	215	14.6666
CUGGGCCAGGA	chr1:154574922-154575177(-)$1	255	148	159	12.2156
UGGGUCCUGGC	chr12:123997886-123998189(-)$1	303	290	301	16.7254
CGGGGUCUGGG	chr3:184045561-184045873(+)$1	312	0	11	14.5686
CGGGGCCUGGC	chr5:75699069-75699318(+)$1	249	16	27	21.1372
UGGGUCCUGGC	chr12:123997812-123998086(-)$1	274	187	198	16.7254
UUGGGCCUGGA	chr12:62940673-62940951(+)$1	278	121	132	13.0980
cgggggcgggc	chr7:156931546-156931873(+)$1	327	269	280	15.8431
cggggccggcc	chrX:20284756-20285018(-)$1	262	204	215	15.5490
AGGGGGCUGGU	chr12:56709504-56709710(-)$1	206	189	200	13.1960
UGAGGCCUAGC	chr19:1470144-1470448(-)$1	304	4	15	11.4313
GGGGGCCUGGU	chr15:34517152-34517427(+)$1	275	175	186	16.8235
CGCGGCCUGUC	chr1:205718987-205719261(-)$1	274	164	175	13.3921
gggguccugga	chr10:697633-697887(-)$1	254	33	44	13.4901
agggggcuggg	chr8:9629762-9630032(+)$1	270	2	13	13.4901
CGGUCCCUGGC	chr2:209119561-209119837(-)$1	276	202	213	13.0980
CGGGGCCUCCC	chr8:124780713-124781064(+)$1	351	125	136	13.0000
cccggccuggc	chr19:1980524-1980771(+)$1	247	30	41	13.4901
AGGGGGCUGCC	chr16:2143715-2144056(-)$1	341	248	259	12.6078
CCGGGCCGGGG	chrX:153236504-153236764(-)$1	260	67	78	12.6078
CGGGCCUUGGC	chr17:48797003-48797288(+)$1	285	199	210	13.2941
CGGGGGCCGGG	chr6:32157703-32157955(-)$1	252	54	65	12.7058
CGGGCCCGGGC	chr15:28501248-28501518(-)$1	270	247	258	15.7450
UCGGGCCUGGG	chr12:6715466-6715708(-)$1	242	175	186	13.3921
CGCGGCCGGGC	chr14:55369278-55369607(-)$1	329	47	58	15.2549
GGAGGCCUGGU	chr12:123998019-123998297(-)$1	278	69	80	13.0000
CGGGGCCAGAC	chr1:179923940-179924305(+)$1	365	65	76	14.9607
CGGGGCUGGGC	chr7:6746354-6746631(-)$1	277	141	152	14.5686
GGAGGCCGGGC	chr2:232576509-232576723(+)$1	214	11	22	13.8823
UGGGCCCUGGC	chr6:56362076-56362390(-)$1	314	271	282	16.5294
GGGGGCCGGGC	chr11:119205166-119205465(+)$1	299	178	189	17.7058
AGGGGGCUGCC	chr16:2143584-2143838(-)$1	254	30	41	12.6078
GGAGGCCUGGU	chr12:123998097-123998362(-)$1	265	134	145	13.0000
UGGGGCCAGUC	chr14:69444765-69445019(-)$1	254	145	156	13.7843
GGGGACCUGGC	chr3:184046322-184046618(+)$1	296	52	63	16.3333
CUGGGCCAGGC	chr16:88782520-88782776(-)$1	256	55	66	15.3529
CUGGGCCAGGC	chr3:184033077-184033354(+)$1	277	27	38	15.3529
GGGGUCCUGCC	chr16:2147628-2147841(-)$1	213	7	18	13.0980
CGGCUCCUGGC	chr6:64282258-64282521(+)$1	263	34	45	13.2941
GGGGGCCUUGC	chr17:79670380-79670659(+)$1	279	179	190	15.1568
AGGGGCCUGGG	chr12:62860550-62860816(+)$1	266	83	94	16.7254
UGGGACCUGGG	chr17:4843821-4844115(+)$1	294	261	272	13.7843
UGGGGCCAGGC	chr16:2142886-2143171(-)$1	285	39	50	17.7058
cgggggcgggg	chr2:159313506-159313743(+)$1	237	77	88	13.1960
UGGGGCAUGGC	chr17:31258243-31258526(+)$1	283	64	75	15.2549
CAGGGCCAGGU	chr14:24679489-24679732(-)$1	243	170	181	12.0196
CUGGGCCUGCC	chr17:8166411-8166666(+)$1	255	198	209	13.9803
CGGGACCCGGC	chr19:10464509-10464769(-)$1	260	57	68	15.1568
UGGGUCCUGGC	chr12:123997747-123998010(-)$1	263	111	122	16.7254

#otherMatches

#Struct PSSM
ggg"""a[acc	chr4:83294796-83295083(-)$1	287	73	84	13.9803
EEEEE}EEEEE	chr22:22221688-22221981(-)$1	293	233	244	13.3921
hEEEEEfffff	chr11:63953576-63953843(+)$1	267	204	215	14.6666
hhhhhh::ccc	chr1:154574922-154575177(-)$1	255	148	159	12.2156
EEEE}HHHHHH	chr12:123997886-123998189(-)$1	303	290	301	16.7254
::GGGGGGG::	chr3:184045561-184045873(+)$1	312	0	11	14.5686
bb]bbiiiiii	chr5:75699069-75699318(+)$1	249	16	27	21.1372
CC:hhhhhhhh	chr12:123997812-123998086(-)$1	274	187	198	16.7254
dd::::GGGGG	chr12:62940673-62940951(+)$1	278	121	132	13.0980
ffmmmmfffff	chr7:156931546-156931873(+)$1	327	269	280	15.8431
b22a]cccccc	chrX:20284756-20285018(-)$1	262	204	215	15.5490
:::::CCC}HH	chr12:56709504-56709710(-)$1	206	189	200	13.1960
FFFddddmmmm	chr19:1470144-1470448(-)$1	304	4	15	11.4313
b!!ddddmmmm	chr15:34517152-34517427(+)$1	275	175	186	16.8235
ee:dddd!!ee	chr1:205718987-205719261(-)$1	274	164	175	13.3921
eeeee"""hhh	chr10:697633-697887(-)$1	254	33	44	13.4901
:DDDDDDDD{E	chr8:9629762-9630032(+)$1	270	2	13	13.4901
e!!cccannnn	chr2:209119561-209119837(-)$1	276	202	213	13.0980
ggggmmmmggg	chr8:124780713-124781064(+)$1	351	125	136	13.0000
MMFFFFFF{EE	chr19:1980524-1980771(+)$1	247	30	41	13.4901
DDDDCCCGGGG	chr16:2143715-2144056(-)$1	341	248	259	12.6078
:bbdddd####	chrX:153236504-153236764(-)$1	260	67	78	12.6078
geeeee!!fff	chr17:48797003-48797288(+)$1	285	199	210	13.2941
E{AKKCCC:hh	chr6:32157703-32157955(-)$1	252	54	65	12.7058
dddCCC}CCCD	chr15:28501248-28501518(-)$1	270	247	258	15.7450
:::GGGGGGGD	chr12:6715466-6715708(-)$1	242	175	186	13.3921
c]dddd22ddd	chr14:55369278-55369607(-)$1	329	47	58	15.2549
gg[eeeeeddd	chr12:123998019-123998297(-)$1	278	69	80	13.0000
eeeeooooooe	chr1:179923940-179924305(+)$1	365	65	76	14.9607
]iiiiiiiii]	chr7:6746354-6746631(-)$1	277	141	152	14.5686
ffffffeeeee	chr2:232576509-232576723(+)$1	214	11	22	13.8823
DDDDDDDDDDD	chr6:56362076-56362390(-)$1	314	271	282	16.5294
DIIIIIIIII{	chr11:119205166-119205465(+)$1	299	178	189	17.7058
FFFFFFFF:::	chr16:2143584-2143838(-)$1	254	30	41	12.6078
iiiiiii:ddd	chr12:123998097-123998362(-)$1	265	134	145	13.0000
YAZZZCCC}HH	chr14:69444765-69445019(-)$1	254	145	156	13.7843
eeeeDDDDKKC	chr3:184046322-184046618(+)$1	296	52	63	16.3333
dddd22ccc]c	chr16:88782520-88782776(-)$1	256	55	66	15.3529
dddd::GGGGG	chr3:184033077-184033354(+)$1	277	27	38	15.3529
lleeeee:EEE	chr16:2147628-2147841(-)$1	213	7	18	13.0980
aBB{BB{DDDD	chr6:64282258-64282521(+)$1	263	34	45	13.2941
ffffff333bb	chr17:79670380-79670659(+)$1	279	179	190	15.1568
:::ggggggg[	chr12:62860550-62860816(+)$1	266	83	94	16.7254
}EEEEEYYHHH	chr17:4843821-4844115(+)$1	294	261	272	13.7843
e22ccc22eee	chr16:2142886-2143171(-)$1	285	39	50	17.7058
JJJJJJGGGGG	chr2:159313506-159313743(+)$1	237	77	88	13.1960
[dddd[fffff	chr17:31258243-31258526(+)$1	283	64	75	15.2549
GGGYYAdddd"	chr14:24679489-24679732(-)$1	243	170	181	12.0196
dd333ccc:ii	chr17:8166411-8166666(+)$1	255	198	209	13.9803
rbb22aadddd	chr19:10464509-10464769(-)$1	260	57	68	15.1568
}BBhhhhhhhh	chr12:123997747-123998010(-)$1	263	111	122	16.7254

#DB
(((...(.(((	chr4:83294796-83295083(-)$1	1	73	84	13.9803
))))).)))))	chr22:22221688-22221981(-)$1	1	233	244	13.3921
))))))(((((	chr11:63953576-63953843(+)$1	1	204	215	14.6666
))))))..(((	chr1:154574922-154575177(-)$1	1	148	159	12.2156
)))).))))))	chr12:123997886-123998189(-)$1	1	290	301	16.7254
..(((((((..	chr3:184045561-184045873(+)$1	1	0	11	14.5686
)).))((((((	chr5:75699069-75699318(+)$1	1	16	27	21.1372
)).((((((((	chr12:123997812-123998086(-)$1	1	187	198	16.7254
))....)))))	chr12:62940673-62940951(+)$1	1	121	132	13.0980
((....)))))	chr7:156931546-156931873(+)$1	1	269	280	15.8431
)..).))))))	chrX:20284756-20285018(-)$1	1	204	215	15.5490
.....))).))	chr12:56709504-56709710(-)$1	1	189	200	13.1960
(((((((....	chr19:1470144-1470448(-)$1	1	4	15	11.4313
(..((((....	chr15:34517152-34517427(+)$1	1	175	186	16.8235
)).((((..((	chr1:205718987-205719261(-)$1	1	164	175	13.3921
(((((...(((	chr10:697633-697887(-)$1	1	33	44	13.4901
.((((((((.(	chr8:9629762-9630032(+)$1	1	2	13	13.4901
(..((((....	chr2:209119561-209119837(-)$1	1	202	213	13.0980
((((....)))	chr8:124780713-124781064(+)$1	1	125	136	13.0000
..((((((.((	chr19:1980524-1980771(+)$1	1	30	41	13.4901
)))))))))))	chr16:2143715-2144056(-)$1	1	248	259	12.6078
.((((((....	chrX:153236504-153236764(-)$1	1	67	78	12.6078
)(((((..(((	chr17:48797003-48797288(+)$1	1	199	210	13.2941
(.(..(((.((	chr6:32157703-32157955(-)$1	1	54	65	12.7058
)))))).))))	chr15:28501248-28501518(-)$1	1	247	258	15.7450
...))))))))	chr12:6715466-6715708(-)$1	1	175	186	13.3921
).))))..)))	chr14:55369278-55369607(-)$1	1	47	58	15.2549
((.((((((((	chr12:123998019-123998297(-)$1	1	69	80	13.0000
((((......)	chr1:179923940-179924305(+)$1	1	65	76	14.9607
.))))))))).	chr7:6746354-6746631(-)$1	1	141	152	14.5686
))))))(((((	chr2:232576509-232576723(+)$1	1	11	22	13.8823
)))))))))))	chr6:56362076-56362390(-)$1	1	271	282	16.5294
)(((((((((.	chr11:119205166-119205465(+)$1	1	178	189	17.7058
((((((((...	chr16:2143584-2143838(-)$1	1	30	41	12.6078
))))))).(((	chr12:123998097-123998362(-)$1	1	134	145	13.0000
.)...))).))	chr14:69444765-69445019(-)$1	1	145	156	13.7843
))))((((..(	chr3:184046322-184046618(+)$1	1	52	63	16.3333
))))..))).)	chr16:88782520-88782776(-)$1	1	55	66	15.3529
))))..(((((	chr3:184033077-184033354(+)$1	1	27	38	15.3529
..))))).(((	chr16:2147628-2147841(-)$1	1	7	18	13.0980
)((.((.((((	chr6:64282258-64282521(+)$1	1	34	45	13.2941
))))))...))	chr17:79670380-79670659(+)$1	1	179	190	15.1568
...(((((((.	chr12:62860550-62860816(+)$1	1	83	94	16.7254
.)))))..)))	chr17:4843821-4844115(+)$1	1	261	272	13.7843
)..)))..)))	chr16:2142886-2143171(-)$1	1	39	50	17.7058
(((((((((((	chr2:159313506-159313743(+)$1	1	77	88	13.1960
.((((.(((((	chr17:31258243-31258526(+)$1	1	64	75	15.2549
)))..)((((.	chr14:24679489-24679732(-)$1	1	170	181	12.0196
))...))).((	chr17:8166411-8166666(+)$1	1	198	209	13.9803
.))..))))))	chr19:10464509-10464769(-)$1	1	57	68	15.1568
.))((((((((	chr12:123997747-123998010(-)$1	1	111	122	16.7254

#PSSM
C : 0.39	U : 0.21	G : 0.15	A : 0.09	c : 0.07	g : 0.03	a : 0.01	
G : 0.70	g : 0.11	U : 0.09	C : 0.03	c : 0.01	A : 0.01	
G : 0.74	g : 0.09	A : 0.07	c : 0.03	C : 0.03	
G : 0.82	g : 0.13	U : 0.01	C : 0.01	
G : 0.62	g : 0.11	U : 0.09	C : 0.07	A : 0.05	u : 0.01	
C : 0.72	G : 0.09	c : 0.07	g : 0.05	A : 0.01	U : 0.01	
C : 0.80	c : 0.13	U : 0.03	A : 0.01	
U : 0.52	A : 0.15	G : 0.11	C : 0.05	g : 0.05	u : 0.05	c : 0.01	
G : 0.78	g : 0.15	A : 0.01	C : 0.01	U : 0.01	
G : 0.68	g : 0.13	C : 0.09	U : 0.03	c : 0.01	A : 0.01	
C : 0.58	G : 0.11	c : 0.09	U : 0.09	A : 0.03	g : 0.03	a : 0.01	

#score	738.0980392156868
#seq	51
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_transcript_m3_run1.nuc.txt

#NT
uuccuucauucuuuccugcccuccugccuacuuc	chr5:172502691-172503003(+)$1	312	122	156	39.9545
ucccucccucccuccuuuccuuccuuccuuccuc	chr7:4123210-4123472(+)$1	262	39	73	52.3409
ucccucccucucucccucucucccucucucccuc	chr8:61671922-61672221(+)$1	299	94	128	35.5227
uccccuacucccuccuuuccuuccuuccuuccuu	chrX:122735151-122735440(-)$1	289	182	216	47.7954
uuccuuccuuccuuccuuccuuccuucccucccu	chr8:129010872-129011174(+)$1	302	194	228	56.9999
UUUCUUCAUCUCccucuuccucccuuucuuccuu	chr16:78845222-78845506(+)$1	284	87	121	39.2727
uucuuuccuuuuuuccuucccuucucucuccauc	chr11:20426526-20426779(+)$1	253	85	119	36.9999
uuccuucuuccuuccuucuucuuccuccuuccuu	chr6:20609415-20609698(+)$1	283	45	79	33.9318
uucuuuccuuucuucucccucuuccucccucuuu	chr4:159785823-159786087(+)$1	264	56	90	30.8636
uccuucuccuccuccuuucuuuuuuuucuuccuc	chr2:44751563-44751853(+)$1	290	81	115	34.6136
uucuuuuuuuucuuuucucuuccuuuccuuccuu	chr13:25855361-25855643(-)$1	282	58	92	38.2499
uuccucccucccuugcuaccucccucccuuccuU	chr6:25815225-25815496(-)$1	271	22	56	46.8863
uuccuuccuuccuuccuuccuuccuuccuuccuu	chr3:149340097-149340336(-)$1	239	49	83	64.1590
ucccuccuuuucuuccugccuucuuucuuuccuu	chr9:140599212-140599528(+)$1	316	49	83	46.9999
CUCCAAcuuuucuuccuuccuuccuuuccuuccu	chr3:185437503-185437799(-)$1	296	122	156	37.6818
uuucuuucuuucuuuucucugcccuccuuuucuu	chr12:23941918-23942177(-)$1	259	88	122	28.5909
cucccucuuuguuuccuuccuuccuuauuuccuu	chrX:56592279-56592587(+)$1	308	133	167	42.4545
uccuucccuuccuuccuuccuuccuuccuuccuu	chr17:3538347-3538608(-)$1	261	62	96	58.0227
ucccucccucccucgaucccucccuuccuuccua	chr2:203603956-203604290(+)$1	334	219	253	40.0681
uuccuuccuuccuuccuuccuuccuuccuuccuc	chr17:64217243-64217532(-)$1	289	0	34	63.3636
ucuguaauuuccuuccuuuuuuccucuccuccuc	chr8:62615358-62615634(-)$1	276	86	120	33.1363
uuccuucuuccuucuucuuccuucuuucuucuuc	chr7:29280375-29280664(+)$1	289	116	150	30.0681
ucccucccuuccucccuuccuuccuUUCUUUCAU	chr6:11210835-11211062(-)$1	227	87	121	48.9318
ucccucccuaccuuccucccuuccuuccuuccuc	chr7:101503085-101503375(+)$1	290	179	213	53.0227
uuccuuuucucuuuccuuuucccuuucccuucuc	chr2:233593599-233593848(+)$1	249	56	90	32.3409
UUAUUUCCUUCCUUCCUUUUUUCUUuuuccuuuc	chrX:69683952-69684270(+)$1	318	63	97	30.6363
ucucuccuuuccuugccuuuuccuuuucuucuuu	chr3:50056856-50057071(+)$1	215	61	95	32.3409
UUGCCuuucuccuuccuucuuucuuucuguucuc	chr3:8682215-8682465(-)$1	250	100	134	32.3409
cuccucccuucuuucuucuccuuccuccuuccuu	chr2:70129274-70129609(+)$1	335	82	116	36.8863
ucucuuuuucccuuccuuccuuccuuuccuuccu	chr20:35552524-35552878(-)$1	354	115	149	40.8636
uuccuuccuuccuuccauccuuccuuccuuccuu	chr3:186702552-186702819(+)$1	267	24	58	59.9545
uuccuuccuucuuuccuuccuuccuuccuuccuu	chr20:8520234-8520485(+)$1	251	170	204	61.4318
uuccuuccuuccguccuuccuucccucuuucuuu	chr8:99713266-99713617(-)$1	351	114	148	49.1590
uucucucuuuugucccuuccuuccuuccuuccAU	chr10:128854728-128855031(+)$1	303	147	181	44.4999
ccuccucuuucuuucuuuccuccuuuccuucuuu	chr10:121094586-121094861(+)$1	275	122	156	36.6590
uugcugucuuccuuuuuuccuuucucccucccuu	chr20:42176433-42176762(+)$1	329	109	143	39.2727
uuuuuucucuucuuccuucuucacuucuuuucuc	chr10:124698654-124698958(-)$1	304	84	118	35.2954
uuccuuuuuuugcuucuuucuucuuuccuuccuc	chr7:95023466-95023777(-)$1	311	145	179	40.2954
uuccuuccuuccuuccuuccuuccuuccuuccuu	chr5:156471212-156471497(-)$1	285	67	101	64.1590
uucuuuccuuccucccuuccuuccuuucuuucuu	chr14:19871867-19872081(-)$1	214	50	84	54.3863
ucccuucaucccuuccucccuuccuuccuuccuc	chr22:28557708-28557955(-)$1	247	71	105	53.4772
Aucuuuccuuccuuccuuccuuccucccucucuc	chr8:97949095-97949401(+)$1	306	87	121	47.6818
UUccuuccuuccuuccuuccucccucccucccuc	chr3:8986082-8986433(-)$1	351	56	90	54.4999

#otherMatches

#Struct PSSM
:::::::::::BB{A{HHHHHHHHLLLDDDD{EE	chr1:44066424-44066702(+)$1	278	35	69	32.7954
:::::::::::::::::::JJJJJJJJJJOOOOO	chr5:172502691-172503003(+)$1	312	122	156	39.9545
::::::::::::::::::::::::::::::::::	chr7:4123210-4123472(+)$1	262	39	73	52.3409
::::::::::::::::::::::::::::::::::	chr8:61671922-61672221(+)$1	299	94	128	35.5227
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:122735151-122735440(-)$1	289	182	216	47.7954
::::::::::::::::::::::::::::::::::	chr8:129010872-129011174(+)$1	302	194	228	56.9999
>>>dddd]bb::::::::::::::::::::::::	chr16:78845222-78845506(+)$1	284	87	121	39.2727
=dddd:::::::::::::::::::::::::::::	chr11:20426526-20426779(+)$1	253	85	119	36.9999
^^^^^^^^^^^^^^^^^^^^^^^^dddd55555c	chr6:20609415-20609698(+)$1	283	45	79	33.9318
f:::::::::::::::::::::::::::::::::	chr4:159785823-159786087(+)$1	264	56	90	30.8636
::::::::::::::::::::::::::::::::::	chr2:44751563-44751853(+)$1	290	81	115	34.6136
::::::::::::::::::::::::::::::::::	chr13:25855361-25855643(-)$1	282	58	92	38.2499
::::::::::::::::::::::::::::::::::	chr6:25815225-25815496(-)$1	271	22	56	46.8863
::::::::::::::::::::::::::::::::::	chr3:149340097-149340336(-)$1	239	49	83	64.1590
^^^^^^^^^^^^^^^^^bb:::::::::::::::	chr9:140599212-140599528(+)$1	316	49	83	46.9999
::::::::::::::::::::::::::::::::::	chr3:185437503-185437799(-)$1	296	122	156	37.6818
fff22==========::FFFFFFPPPPPPPHHHH	chr12:23941918-23942177(-)$1	259	88	122	28.5909
d[bbccc^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:56592279-56592587(+)$1	308	133	167	42.4545
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:3538347-3538608(-)$1	261	62	96	58.0227
::::bbqqqqqqqqbb:::::ddddqqqqqqqqd	chr2:203603956-203604290(+)$1	334	219	253	40.0681
::::::::::::::::::::::::::::::::::	chr17:64217243-64217532(-)$1	289	0	34	63.3636
rrrrrrrrrccc::::::::::::::::::::::	chr8:62615358-62615634(-)$1	276	86	120	33.1363
::::::::::::::::::::::::::::::::::	chr7:29280375-29280664(+)$1	289	116	150	30.0681
BBEEEEE::::ddddbbzzzzzzzzzzzzzzzzz	chr6:11210835-11211062(-)$1	227	87	121	48.9318
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:101503085-101503375(+)$1	290	179	213	53.0227
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:233593599-233593848(+)$1	249	56	90	32.3409
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:69683952-69684270(+)$1	318	63	97	30.6363
^^^hhhhhhhh333bb::::::::::::::::::	chr3:50056856-50057071(+)$1	215	61	95	32.3409
]bb:::::::::::::::::::::::::::::::	chr3:8682215-8682465(-)$1	250	100	134	32.3409
::::::::::::::::::::::::::::::::::	chr2:70129274-70129609(+)$1	335	82	116	36.8863
::::::::::::::::::::::::::::::::::	chr20:35552524-35552878(-)$1	354	115	149	40.8636
::::::::::::::::::::::::::::::::::	chr3:186702552-186702819(+)$1	267	24	58	59.9545
::::::::::::::::::::::::::::::::::	chr20:8520234-8520485(+)$1	251	170	204	61.4318
iiiii:::::::::::::::::::::::::::::	chr8:99713266-99713617(-)$1	351	114	148	49.1590
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:128854728-128855031(+)$1	303	147	181	44.4999
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:121094586-121094861(+)$1	275	122	156	36.6590
::::::::::::::::CCCGGGGGGG}BBZZZDD	chr20:42176433-42176762(+)$1	329	109	143	39.2727
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:124698654-124698958(-)$1	304	84	118	35.2954
:::::::::eeeee%%%%%%dddd++++++++++	chr7:95023466-95023777(-)$1	311	145	179	40.2954
::::::::::::::::::::::::::::::::::	chr5:156471212-156471497(-)$1	285	67	101	64.1590
::::::::::::::::::::::::::::::::::	chr14:19871867-19872081(-)$1	214	50	84	54.3863
::::::::::::::::::::::::::::::::::	chr22:28557708-28557955(-)$1	247	71	105	53.4772
=:::::::::::::::::::::::::::::::::	chr8:97949095-97949401(+)$1	306	87	121	47.6818
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:8986082-8986433(-)$1	351	56	90	54.4999

#DB
...........((.(.((((((((...((((.((	chr1:44066424-44066702(+)$1	1	35	69	32.7954
...................((((((((((.....	chr5:172502691-172503003(+)$1	1	122	156	39.9545
..................................	chr7:4123210-4123472(+)$1	1	39	73	52.3409
..................................	chr8:61671922-61672221(+)$1	1	94	128	35.5227
..................................	chrX:122735151-122735440(-)$1	1	182	216	47.7954
..................................	chr8:129010872-129011174(+)$1	1	194	228	56.9999
...)))).))........................	chr16:78845222-78845506(+)$1	1	87	121	39.2727
))))).............................	chr11:20426526-20426779(+)$1	1	85	119	36.9999
........................)))).....)	chr6:20609415-20609698(+)$1	1	45	79	33.9318
).................................	chr4:159785823-159786087(+)$1	1	56	90	30.8636
..................................	chr2:44751563-44751853(+)$1	1	81	115	34.6136
..................................	chr13:25855361-25855643(-)$1	1	58	92	38.2499
..................................	chr6:25815225-25815496(-)$1	1	22	56	46.8863
..................................	chr3:149340097-149340336(-)$1	1	49	83	64.1590
.................))...............	chr9:140599212-140599528(+)$1	1	49	83	46.9999
..................................	chr3:185437503-185437799(-)$1	1	122	156	37.6818
)))..))))))))))..((((((.......((((	chr12:23941918-23942177(-)$1	1	88	122	28.5909
(.(((((...........................	chrX:56592279-56592587(+)$1	1	133	167	42.4545
..................................	chr17:3538347-3538608(-)$1	1	62	96	58.0227
....((........)).....((((........)	chr2:203603956-203604290(+)$1	1	219	253	40.0681
..................................	chr17:64217243-64217532(-)$1	1	0	34	63.3636
.........)))......................	chr8:62615358-62615634(-)$1	1	86	120	33.1363
..................................	chr7:29280375-29280664(+)$1	1	116	150	30.0681
(((((((....((((((.................	chr6:11210835-11211062(-)$1	1	87	121	48.9318
..................................	chr7:101503085-101503375(+)$1	1	179	213	53.0227
..................................	chr2:233593599-233593848(+)$1	1	56	90	32.3409
..................................	chrX:69683952-69684270(+)$1	1	63	97	30.6363
...))))))))...))..................	chr3:50056856-50057071(+)$1	1	61	95	32.3409
.))...............................	chr3:8682215-8682465(-)$1	1	100	134	32.3409
..................................	chr2:70129274-70129609(+)$1	1	82	116	36.8863
..................................	chr20:35552524-35552878(-)$1	1	115	149	40.8636
..................................	chr3:186702552-186702819(+)$1	1	24	58	59.9545
..................................	chr20:8520234-8520485(+)$1	1	170	204	61.4318
))))).............................	chr8:99713266-99713617(-)$1	1	114	148	49.1590
..................................	chr10:128854728-128855031(+)$1	1	147	181	44.4999
..................................	chr10:121094586-121094861(+)$1	1	122	156	36.6590
................)))))))))).))...))	chr20:42176433-42176762(+)$1	1	109	143	39.2727
..................................	chr10:124698654-124698958(-)$1	1	84	118	35.2954
.........(((((......((((..........	chr7:95023466-95023777(-)$1	1	145	179	40.2954
..................................	chr5:156471212-156471497(-)$1	1	67	101	64.1590
..................................	chr14:19871867-19872081(-)$1	1	50	84	54.3863
..................................	chr22:28557708-28557955(-)$1	1	71	105	53.4772
).................................	chr8:97949095-97949401(+)$1	1	87	121	47.6818
..................................	chr3:8986082-8986433(-)$1	1	56	90	54.4999

#PSSM
u : 0.77	c : 0.09	U : 0.09	C : 0.02	A : 0.02	
u : 0.56	c : 0.31	U : 0.11	
c : 0.74	u : 0.13	U : 0.02	C : 0.02	A : 0.02	G : 0.02	g : 0.02	
c : 0.65	u : 0.22	C : 0.06	g : 0.02	U : 0.02	
u : 0.81	c : 0.09	U : 0.04	A : 0.02	C : 0.02	
u : 0.61	c : 0.27	U : 0.04	A : 0.02	a : 0.02	g : 0.02	
c : 0.70	u : 0.20	a : 0.04	C : 0.04	
c : 0.56	u : 0.34	a : 0.04	A : 0.02	C : 0.02	
u : 0.86	c : 0.09	U : 0.04	
u : 0.70	c : 0.22	C : 0.02	a : 0.02	U : 0.02	
c : 0.68	u : 0.25	U : 0.02	g : 0.02	C : 0.02	
c : 0.70	u : 0.20	C : 0.04	g : 0.04	
u : 0.88	c : 0.06	U : 0.02	g : 0.02	
u : 0.72	c : 0.25	U : 0.02	
c : 0.77	u : 0.13	g : 0.06	C : 0.02	
c : 0.70	u : 0.25	a : 0.02	C : 0.02	
u : 0.84	c : 0.11	U : 0.02	a : 0.02	
u : 0.74	c : 0.15	g : 0.04	a : 0.02	U : 0.02	
c : 0.79	u : 0.18	U : 0.02	
c : 0.74	u : 0.22	U : 0.02	
u : 0.79	c : 0.15	g : 0.02	U : 0.02	
u : 0.72	c : 0.25	U : 0.02	
c : 0.79	u : 0.15	C : 0.02	a : 0.02	
c : 0.79	u : 0.18	U : 0.02	
u : 0.86	c : 0.11	U : 0.02	
u : 0.77	c : 0.18	g : 0.02	U : 0.02	
c : 0.70	u : 0.25	a : 0.02	U : 0.02	
c : 0.81	u : 0.15	C : 0.02	
u : 0.79	c : 0.15	U : 0.02	g : 0.02	
u : 0.79	c : 0.15	a : 0.02	U : 0.02	
c : 0.77	u : 0.20	U : 0.02	
c : 0.79	u : 0.15	a : 0.02	C : 0.02	
u : 0.86	c : 0.09	A : 0.04	
u : 0.49	c : 0.40	U : 0.06	a : 0.02	

#score	1918.909090909088
#seq	44
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_CDS_m2_run1.nuc.txt

#NT
AAgccgcccgccaggccgcccgggacggggc	chr21:38119979-38120204(+)$1	225	85	116	26.0000
CUggcggcggcggcggcggcggcggcggcgC	chr9:101867477-101867761(+)$1	284	58	89	33.0000
GCGGGGGCCGCCGGGGAGCUGGGGGUGGCGC	chr19:2270333-2270600(+)$1	267	167	198	44.9999
ACGCGGGCCGCGGCGCUGAGGGGGAGGGAGG	chr5:138629681-138629966(+)$1	285	181	212	29.5000
gagggcgccgcgcgggcaggcgggcgggcgc	chr1:110527543-110527808(+)$1	265	44	75	29.0000
AGGAGGCGUGCUGGGGAGAGCGGGGCGGCUC	chr19:18548429-18548688(-)$1	259	39	70	27.5000
GAGGAGGGAGCCGCGGGGCUUGGCGGGGUCG	chr7:77166711-77166970(+)$1	259	12	43	24.5000
GCGGGGGCCGCCGGGGAGCUGGGGGUGGCGC	chr19:2270490-2270716(+)$1	226	10	41	44.9999
UCGGCGGCUGCUGCCGGCCCGGAGGGGGCCC	chr6:43596691-43596967(-)$1	276	93	124	26.5000

#otherMatches

#Struct PSSM
44ccc::cccammmma]ccchhhhhhhh[cc	chr10:72503663-72503929(+)$1	266	90	121	25.0000
mmcccddddCCC{CCCHHHHHHHH{EEEEEK	chr21:38119979-38120204(+)$1	225	85	116	26.0000
dddd[ggggggg[bb[bbmmmmbb]bb]ggg	chr9:101867477-101867761(+)$1	284	58	89	33.0000
JJJJJJJJJJJhhhhhhhhgggggggeeeee	chr19:2270333-2270600(+)$1	267	167	198	44.9999
:A}HHHHHHHHYYDDDD::ccc[cccppppp	chr5:138629681-138629966(+)$1	285	181	212	29.5000
gEEEEE{FFFFFFDDDD{BBKKEEEEEKKDD	chr1:110527543-110527808(+)$1	265	44	75	29.0000
eeedddddddd"""ccc"""dddd[bbdddd	chr19:18548429-18548688(-)$1	259	39	70	27.5000
xxxxxxxxxeeeee:GGGGGGG{AFFFFFFC	chr7:77166711-77166970(+)$1	259	12	43	24.5000
c[ccc[bb[ffffff!!a[a[fffffflllf	chr19:2270490-2270716(+)$1	226	10	41	44.9999
ff]bb]==============7777777hhhh	chr6:43596691-43596967(-)$1	276	93	124	26.5000

#DB
..)))..((((....).)))((((((((.((	chr10:72503663-72503929(+)$1	1	90	121	25.0000
..)))))))(((.(((((((((((.(((((.	chr21:38119979-38120204(+)$1	1	85	116	26.0000
((((.(((((((.((.((....)).)).)))	chr9:101867477-101867761(+)$1	1	58	89	33.0000
)))))))))))((((((((((((((((((((	chr19:2270333-2270600(+)$1	1	167	198	44.9999
.).))))))))..))))..(((.(((.....	chr5:138629681-138629966(+)$1	1	181	212	29.5000
)(((((.((((((((((.((..(((((..((	chr1:110527543-110527808(+)$1	1	44	75	29.0000
(((((((((((...(((...((((.((((((	chr19:18548429-18548688(-)$1	1	39	70	27.5000
.........))))).(((((((.((((((((	chr7:77166711-77166970(+)$1	1	12	43	24.5000
(.(((.((.((((((..(.(.((((((...)	chr19:2270490-2270716(+)$1	1	10	41	44.9999
)).)).)))))))))))))).......))))	chr6:43596691-43596967(-)$1	1	93	124	26.5000

#PSSM
A : 0.40	G : 0.30	C : 0.10	g : 0.10	U : 0.10	
C : 0.40	A : 0.30	U : 0.10	a : 0.10	G : 0.10	
G : 0.60	g : 0.30	U : 0.10	
G : 0.50	g : 0.20	c : 0.10	C : 0.10	A : 0.10	
G : 0.50	c : 0.20	g : 0.10	A : 0.10	C : 0.10	
G : 0.70	g : 0.20	c : 0.10	
G : 0.50	g : 0.20	A : 0.10	c : 0.10	C : 0.10	
C : 0.40	G : 0.30	c : 0.30	
C : 0.40	c : 0.20	U : 0.20	g : 0.10	A : 0.10	
G : 0.60	g : 0.30	C : 0.10	
C : 0.70	c : 0.30	
C : 0.40	g : 0.20	U : 0.20	c : 0.10	G : 0.10	
G : 0.70	a : 0.10	g : 0.10	c : 0.10	
G : 0.40	C : 0.30	g : 0.20	c : 0.10	
G : 0.60	g : 0.30	C : 0.10	
G : 0.60	g : 0.20	c : 0.10	C : 0.10	
c : 0.30	A : 0.30	U : 0.20	G : 0.20	
G : 0.60	g : 0.20	a : 0.10	C : 0.10	
C : 0.40	g : 0.20	A : 0.20	G : 0.10	c : 0.10	
U : 0.30	C : 0.20	c : 0.20	G : 0.20	g : 0.10	
G : 0.50	c : 0.20	g : 0.10	C : 0.10	U : 0.10	
G : 0.70	g : 0.30	
G : 0.50	g : 0.20	U : 0.10	c : 0.10	A : 0.10	
G : 0.60	g : 0.30	C : 0.10	
G : 0.60	a : 0.10	g : 0.10	A : 0.10	c : 0.10	
G : 0.40	c : 0.20	U : 0.20	g : 0.10	C : 0.10	
G : 0.70	g : 0.30	
G : 0.70	g : 0.30	
C : 0.50	c : 0.20	g : 0.10	A : 0.10	U : 0.10	
g : 0.30	G : 0.30	C : 0.20	A : 0.10	U : 0.10	
C : 0.50	G : 0.30	c : 0.20	

#score	311.0000000000001
#seq	10
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_CDS_m1_run1.nuc.txt

#NT
GGGGUAGG	chr3:38167854-38168096(-)$1	242	109	117	15.2698
GGGCCAGG	chr7:1479526-1479796(-)$1	270	21	29	15.1904
GGGGCUGG	chr17:4904584-4904828(+)$1	244	46	54	16.6984
GGGGCAGC	chr5:141009175-141009404(-)$1	229	42	50	15.0317
GGGCCAGG	chr20:60897681-60897994(-)$1	313	26	34	15.1904
AGGGCAGG	chr3:49166446-49166729(-)$1	283	270	278	15.6666
GGAGCAGG	chr17:63533043-63533310(-)$1	267	9	17	14.9523
gaggcagg	chr9:116968452-116968712(+)$1	260	1	9	15.0317
GGGGCAGG	chr11:208988-209281(+)$1	293	78	86	19.5555
GGGGGAGG	chr16:29816275-29816549(+)$1	274	90	98	15.5079
GGGGGAGG	chr1:44451062-44451306(+)$1	244	47	55	15.5079
ggggcugg	chr9:136223012-136223333(-)$1	321	45	53	16.6984
GGGGCUGG	chr17:4903896-4904174(+)$1	278	92	100	16.6984
UGGGCAGG	chr19:1011071-1011328(-)$1	257	1	9	15.6666
GGAGCAGG	chr17:73888125-73888404(-)$1	279	26	34	14.9523
gggggagg	chr20:62338326-62338612(-)$1	286	110	118	15.5079
GGGGAAGG	chr3:53220592-53220903(+)$1	311	137	145	15.4285
GGGGCCGG	chr16:1500303-1500601(-)$1	298	57	65	16.6190
GGGGCCGG	chr16:8728906-8729150(+)$1	244	199	207	16.6190
GGGGCAGC	chr20:17606137-17606406(-)$1	269	22	30	15.0317
GGGGCCGG	chr19:34919374-34919604(+)$1	230	12	20	16.6190
ggggccgg	chr2:54197815-54198043(-)$1	228	70	78	16.6190
GGGGCUGG	chr6:33166087-33166345(-)$1	258	215	223	16.6984
GGGGCAGA	chr1:161192951-161193161(-)$1	210	198	206	15.0317
UGGGCAGG	chr19:36302779-36303018(-)$1	239	148	156	15.6666
GGGGGAGG	chr16:88725017-88725276(-)$1	259	95	103	15.5079
UGGGCAGG	chr1:17982235-17982497(+)$1	262	17	25	15.6666
AGGGCAGG	chr22:22041036-22041288(+)$1	252	110	118	15.6666
GGGGCGGG	chr17:80045763-80045977(-)$1	214	23	31	16.6984
CGGGCAGG	chr21:46912486-46912713(+)$1	227	58	66	15.5079
GGGGCAGG	chr16:2577491-2577722(+)$1	231	109	117	19.5555
GGGGCAGG	chr17:2266100-2266374(+)$1	274	130	138	19.5555
GGGGCGGG	chr14:103396612-103396877(+)$1	265	58	66	16.6984
ggggcggg	chr17:7080111-7080367(-)$1	256	79	87	16.6984
GGGUCAGG	chr16:3070472-3070752(+)$1	280	127	135	15.2698
GGGGCAGG	chr14:24652245-24652473(-)$1	228	56	64	19.5555
GGGGCUGG	chr17:43012655-43012895(-)$1	240	131	139	16.6984
GGGGCAGG	chr3:9984749-9984994(+)$1	245	40	48	19.5555
GGGGCGGG	chr5:138629682-138629974(+)$1	292	156	164	16.6984
GGGGCAAG	chr20:33508981-33509249(+)$1	268	73	81	14.7142
GGGGCAGG	chr20:48500498-48500773(+)$1	275	130	138	19.5555
GUGGCAGG	chr5:179251028-179251325(+)$1	297	98	106	15.0317
GGGGCGGG	chr22:50716824-50717103(-)$1	279	94	102	16.6984
GGGGCCGG	chr6:43596564-43596830(-)$1	266	15	23	16.6190
agggcagg	chr19:47287223-47287524(-)$1	301	35	43	15.6666
ggggcaga	chr17:80019742-80020016(-)$1	274	41	49	15.0317
GGGGCCGG	chr17:80050787-80051047(-)$1	260	103	111	16.6190
GGGGAAGG	chr19:42795174-42795419(+)$1	245	4	12	15.4285
GGGGCGGG	chr1:1274712-1275023(-)$1	311	84	92	16.6984
GUGGCAGG	chr17:42266605-42266868(+)$1	263	10	18	15.0317
GGUGCAGG	chr19:4556917-4557193(-)$1	276	29	37	14.8730
AGGGCAGG	chr19:3532272-3532534(+)$1	262	58	66	15.6666
GGGGCUGG	chr19:10431484-10431725(-)$1	241	204	212	16.6984
GGGGCAGG	chr16:1828215-1828500(-)$1	285	29	37	19.5555
GGGUCAGG	chr8:145641398-145641669(-)$1	271	236	244	15.2698
GGGGCUGG	chr20:61460114-61460393(+)$1	279	89	97	16.6984
GAGGCAGG	chr12:56743165-56743448(-)$1	283	98	106	15.0317
GGGGAAGG	chr2:27558742-27559055(-)$1	313	60	68	15.4285
GGGACAGG	chr5:95242088-95242369(-)$1	281	21	29	15.1111
ggggcggg	chr2:128180675-128180951(+)$1	276	104	112	16.6984
CGGGCAGG	chr17:79684274-79684538(+)$1	264	6	14	15.5079
UGGGCAGG	chr9:116967930-116968189(+)$1	259	61	69	15.6666

#otherMatches

#Struct PSSM
eeeee:::	chr17:39967160-39967423(-)$1	263	50	58	15.2698
hhhhhhhh	chr3:38167854-38168096(-)$1	242	109	117	15.2698
DDDDKKBB	chr7:1479526-1479796(-)$1	270	21	29	15.1904
cdddd]dd	chr17:4904584-4904828(+)$1	244	46	54	16.6984
nnnnbb]a	chr5:141009175-141009404(-)$1	229	42	50	15.0317
eeeee!!c	chr20:60897681-60897994(-)$1	313	26	34	15.1904
qqqqqqee	chr3:49166446-49166729(-)$1	283	270	278	15.6666
ee[bb[dd	chr17:63533043-63533310(-)$1	267	9	17	14.9523
cc[bb"""	chr9:116968452-116968712(+)$1	260	1	9	15.0317
H{CCC{EE	chr11:208988-209281(+)$1	293	78	86	19.5555
eeeFFFFF	chr16:29816275-29816549(+)$1	274	90	98	15.5079
Fdddd[ee	chr1:44451062-44451306(+)$1	244	47	55	15.5079
ddd!!ddd	chr9:136223012-136223333(-)$1	321	45	53	16.6984
gppppppp	chr17:4903896-4904174(+)$1	278	92	100	16.6984
DDDKKCCC	chr19:1011071-1011328(-)$1	257	1	9	15.6666
DDDDGGGG	chr17:73888125-73888404(-)$1	279	26	34	14.9523
c]bb:ccc	chr20:62338326-62338612(-)$1	286	110	118	15.5079
====:::C	chr3:53220592-53220903(+)$1	311	137	145	15.4285
eeee!!bb	chr16:1500303-1500601(-)$1	298	57	65	16.6190
bb]ccca[	chr16:8728906-8729150(+)$1	244	199	207	16.6190
]dddd22b	chr20:17606137-17606406(-)$1	269	22	30	15.0317
:::CCC:g	chr19:34919374-34919604(+)$1	230	12	20	16.6190
c]dddd]a	chr2:54197815-54198043(-)$1	228	70	78	16.6190
c:eeeeen	chr6:33166087-33166345(-)$1	258	215	223	16.6984
ee:EEEEE	chr1:161192951-161193161(-)$1	210	198	206	15.0317
dddd22dd	chr19:36302779-36303018(-)$1	239	148	156	15.6666
ffff!!dd	chr16:88725017-88725276(-)$1	259	95	103	15.5079
FFFGGGGG	chr1:17982235-17982497(+)$1	262	17	25	15.6666
========	chr22:22041036-22041288(+)$1	252	110	118	15.6666
eebb[ddd	chr17:80045763-80045977(-)$1	214	23	31	16.6984
####bb[d	chr21:46912486-46912713(+)$1	227	58	66	15.5079
dddd[eee	chr16:2577491-2577722(+)$1	231	109	117	19.5555
[dddd[ff	chr17:2266100-2266374(+)$1	274	130	138	19.5555
c[======	chr14:103396612-103396877(+)$1	265	58	66	16.6984
eeebb]ee	chr17:7080111-7080367(-)$1	256	79	87	16.6984
ddd"""ee	chr16:3070472-3070752(+)$1	280	127	135	15.2698
dd[bb[bb	chr14:24652245-24652473(-)$1	228	56	64	19.5555
eeeccc%%	chr17:43012655-43012895(-)$1	240	131	139	16.6984
::::ffff	chr3:9984749-9984994(+)$1	245	40	48	19.5555
ff"""bbn	chr5:138629682-138629974(+)$1	292	156	164	16.6984
ggggggee	chr20:33508981-33509249(+)$1	268	73	81	14.7142
IEEEEEff	chr20:48500498-48500773(+)$1	275	130	138	19.5555
ggpppppp	chr5:179251028-179251325(+)$1	297	98	106	15.0317
eeeeeee!	chr22:50716824-50717103(-)$1	279	94	102	16.6984
GGGGGddd	chr6:43596564-43596830(-)$1	266	15	23	16.6190
OFFFFFFc	chr19:47287223-47287524(-)$1	301	35	43	15.6666
EEEEENNN	chr17:80019742-80020016(-)$1	274	41	49	15.0317
ii]bbJJJ	chr17:80050787-80051047(-)$1	260	103	111	16.6190
:CCCKKCC	chr19:42795174-42795419(+)$1	245	4	12	15.4285
FFFF{DDD	chr1:1274712-1275023(-)$1	311	84	92	16.6984
ggggccc$	chr17:42266605-42266868(+)$1	263	10	18	15.0317
FFFNNNNN	chr19:4556917-4557193(-)$1	276	29	37	14.8730
cdddd[dd	chr19:3532272-3532534(+)$1	262	58	66	15.6666
DDDD}A}F	chr19:10431484-10431725(-)$1	241	204	212	16.6984
eeeeeeee	chr16:1828215-1828500(-)$1	285	29	37	19.5555
cc]ggggg	chr8:145641398-145641669(-)$1	271	236	244	15.2698
dddbb[ii	chr20:61460114-61460393(+)$1	279	89	97	16.6984
!!ffffff	chr12:56743165-56743448(-)$1	283	98	106	15.0317
========	chr2:27558742-27559055(-)$1	313	60	68	15.4285
eee[cccd	chr5:95242088-95242369(-)$1	281	21	29	15.1111
[bbbb[bb	chr2:128180675-128180951(+)$1	276	104	112	16.6984
EEEE{HHH	chr17:79684274-79684538(+)$1	264	6	14	15.5079
fffff"""	chr9:116967930-116968189(+)$1	259	61	69	15.6666

#DB
)))))...	chr17:39967160-39967423(-)$1	1	50	58	15.2698
))))))))	chr3:38167854-38168096(-)$1	1	109	117	15.2698
((((..((	chr7:1479526-1479796(-)$1	1	21	29	15.1904
))))).))	chr17:4904584-4904828(+)$1	1	46	54	16.6984
....)).)	chr5:141009175-141009404(-)$1	1	42	50	15.0317
(((((..(	chr20:60897681-60897994(-)$1	1	26	34	15.1904
......))	chr3:49166446-49166729(-)$1	1	270	278	15.6666
((.((.((	chr17:63533043-63533310(-)$1	1	9	17	14.9523
((.((...	chr9:116968452-116968712(+)$1	1	1	9	15.0317
(.(((.((	chr11:208988-209281(+)$1	1	78	86	19.5555
)))(((((	chr16:29816275-29816549(+)$1	1	90	98	15.5079
(((((.((	chr1:44451062-44451306(+)$1	1	47	55	15.5079
(((..(((	chr9:136223012-136223333(-)$1	1	45	53	16.6984
(.......	chr17:4903896-4904174(+)$1	1	92	100	16.6984
(((..(((	chr19:1011071-1011328(-)$1	1	1	9	15.6666
((((((((	chr17:73888125-73888404(-)$1	1	26	34	14.9523
).)).(((	chr20:62338326-62338612(-)$1	1	110	118	15.5079
))))...(	chr3:53220592-53220903(+)$1	1	137	145	15.4285
((((..((	chr16:1500303-1500601(-)$1	1	57	65	16.6190
)).)))(.	chr16:8728906-8729150(+)$1	1	199	207	16.6190
.))))..)	chr20:17606137-17606406(-)$1	1	22	30	15.0317
...(((.(	chr19:34919374-34919604(+)$1	1	12	20	16.6190
).)))).)	chr2:54197815-54198043(-)$1	1	70	78	16.6190
).(((((.	chr6:33166087-33166345(-)$1	1	215	223	16.6984
)).)))))	chr1:161192951-161193161(-)$1	1	198	206	15.0317
))))..))	chr19:36302779-36303018(-)$1	1	148	156	15.6666
((((..((	chr16:88725017-88725276(-)$1	1	95	103	15.5079
((((((((	chr1:17982235-17982497(+)$1	1	17	25	15.6666
))))))))	chr22:22041036-22041288(+)$1	1	110	118	15.6666
((((.(((	chr17:80045763-80045977(-)$1	1	23	31	16.6984
....((.(	chr21:46912486-46912713(+)$1	1	58	66	15.5079
((((.(((	chr16:2577491-2577722(+)$1	1	109	117	19.5555
.((((.((	chr17:2266100-2266374(+)$1	1	130	138	19.5555
(.((((((	chr14:103396612-103396877(+)$1	1	58	66	16.6984
))))).))	chr17:7080111-7080367(-)$1	1	79	87	16.6984
(((...((	chr16:3070472-3070752(+)$1	1	127	135	15.2698
((.((.((	chr14:24652245-24652473(-)$1	1	56	64	19.5555
((((((..	chr17:43012655-43012895(-)$1	1	131	139	16.6984
....((((	chr3:9984749-9984994(+)$1	1	40	48	19.5555
((...((.	chr5:138629682-138629974(+)$1	1	156	164	16.6984
((((((((	chr20:33508981-33509249(+)$1	1	73	81	14.7142
((((((((	chr20:48500498-48500773(+)$1	1	130	138	19.5555
((......	chr5:179251028-179251325(+)$1	1	98	106	15.0317
))(((((.	chr22:50716824-50717103(-)$1	1	94	102	16.6984
((((((((	chr6:43596564-43596830(-)$1	1	15	23	16.6190
.(((((((	chr19:47287223-47287524(-)$1	1	35	43	15.6666
(((((...	chr17:80019742-80020016(-)$1	1	41	49	15.0317
)).)))))	chr17:80050787-80051047(-)$1	1	103	111	16.6190
.(((..((	chr19:42795174-42795419(+)$1	1	4	12	15.4285
((((.(((	chr1:1274712-1275023(-)$1	1	84	92	16.6984
(((((((.	chr17:42266605-42266868(+)$1	1	10	18	15.0317
(((.....	chr19:4556917-4557193(-)$1	1	29	37	14.8730
(((((.((	chr19:3532272-3532534(+)$1	1	58	66	15.6666
)))).).)	chr19:10431484-10431725(-)$1	1	204	212	16.6984
))))))))	chr16:1828215-1828500(-)$1	1	29	37	19.5555
)).)))))	chr8:145641398-145641669(-)$1	1	236	244	15.2698
(((((.((	chr20:61460114-61460393(+)$1	1	89	97	16.6984
..((((((	chr12:56743165-56743448(-)$1	1	98	106	15.0317
((((((((	chr2:27558742-27559055(-)$1	1	60	68	15.4285
(((.((((	chr5:95242088-95242369(-)$1	1	21	29	15.1111
.((((.((	chr2:128180675-128180951(+)$1	1	104	112	16.6984
((((.(((	chr17:79684274-79684538(+)$1	1	6	14	15.5079
(((((...	chr9:116967930-116968189(+)$1	1	61	69	15.6666

#PSSM
G : 0.73	g : 0.11	U : 0.06	A : 0.04	C : 0.03	a : 0.01	
G : 0.82	g : 0.11	U : 0.03	a : 0.01	A : 0.01	
G : 0.82	g : 0.12	A : 0.03	U : 0.01	
G : 0.77	g : 0.12	U : 0.04	C : 0.03	A : 0.01	
C : 0.76	c : 0.11	G : 0.04	A : 0.04	U : 0.01	g : 0.01	
A : 0.61	U : 0.09	C : 0.07	G : 0.07	a : 0.06	g : 0.03	u : 0.01	c : 0.01	
G : 0.85	g : 0.12	A : 0.01	
G : 0.82	g : 0.11	C : 0.03	A : 0.01	a : 0.01	

#score	1021.365079365078
#seq	63
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_CDS_m2_run2.nuc.txt

#NT
ACAGGCCCAGC	chr17:79826377-79826637(-)$1	260	73	84	18.1960
CCGGGCCCGGC	chr3:196730105-196730417(-)$1	312	265	276	18.9803
ACAGCCCCUGC	chr1:43200640-43200896(-)$1	256	27	38	17.1176
GCAGGCCCAGC	chr16:1496230-1496483(-)$1	253	68	79	18.3921
cccgccccagc	chr17:36861797-36862083(+)$1	286	55	66	15.7450
CCUGGCCCUCC	chr11:60703910-60704252(+)$1	342	208	219	16.7254
CCAGGCCCUGG	chr7:938328-938662(-)$1	334	292	303	19.3725
CCAGCCCCUCC	chr17:79826504-79826764(-)$1	260	76	87	16.8235
UGAGGCCCUGC	chr16:31501600-31501902(-)$1	302	284	295	15.5490
CUAAGCCCUGC	chr10:102744143-102744385(+)$1	242	202	213	14.9607
CCAGGCCGUGG	chr21:45565324-45565647(+)$1	323	196	207	15.5490
CCGGGCCCAGC	chr19:2015530-2015797(-)$1	267	171	182	18.6862
CCAGGCCUUGC	chr14:24774683-24774999(+)$1	316	247	258	19.6666
GCAGCCCCUGC	chr19:1089370-1089608(-)$1	238	32	43	17.3137
CCGGGCCCGGC	chr19:55998095-55998404(+)$1	309	89	100	18.9803
GCAGGCCCUGC	chr16:633106-633367(+)$1	261	55	66	20.3529
CCAGGCCCUGC	chr19:36640784-36641050(+)$1	266	200	211	23.8823
CCUGGCCGUGC	chr13:113751047-113751331(+)$1	284	238	249	16.9215
CCGGGGCCUGC	chr14:21560335-21560575(-)$1	240	119	130	16.3333
CCAGGCCCCGC	chr17:76671843-76672125(-)$1	282	50	61	21.9215
CCAGGCCCUGC	chr3:48511026-48511252(-)$1	226	181	192	23.8823
CCACGCCGUGC	chr18:77663901-77664190(-)$1	289	178	189	15.9411
CCUUGCCCAGC	chr1:43201369-43201647(-)$1	278	147	158	14.5686
CCCGGCCCCUC	chr17:79890680-79890967(-)$1	287	272	283	14.8627
CCCGGCCCCUC	chr17:79890578-79890880(-)$1	302	185	196	14.8627
CCAGGCCCUGA	chr22:39131058-39131330(-)$1	272	14	25	19.2745
CCAGGCCCUGC	chr19:41248262-41248520(-)$1	258	143	154	23.8823
CCAGUCCCCGC	chr2:242757892-242758187(+)$1	295	217	228	18.7843
CCCUGCCCAGC	chr3:184063025-184063390(+)$1	365	256	267	14.5686
CCAGGUCCUCC	chr16:31501299-31501581(-)$1	282	102	113	15.5490
GGAGGCCCUGC	chr3:49394934-49395270(-)$1	336	227	238	15.8431
CCAGGACCUUC	chr16:31501747-31502037(-)$1	290	72	83	15.5490
CCCGGCCCCUC	chr1:55527113-55527327(+)$1	214	97	108	14.8627
CCAGGCCGUGC	chr8:144812271-144812519(-)$1	248	69	80	20.0588
CCACGUCCUGC	chr12:120534706-120534967(-)$1	261	236	247	15.4509
CCAGUCCCCGC	chr2:242757987-242758224(+)$1	237	122	133	18.7843
CCACGCCCGGC	chr1:1374804-1375076(+)$1	272	47	58	18.0980
CCAGUCCCGGC	chr11:1775138-1775414(-)$1	276	7	18	19.0784
CCAGGCCCUGC	chr17:74078586-74078876(-)$1	290	127	138	23.8823
ACAGGCCAUGC	chr22:50716560-50716794(-)$1	234	90	101	15.9411
GCAGGGCCUGC	chr19:42880259-42880577(+)$1	318	28	39	16.0392
CCAGGCCGGGC	chr17:80401387-80401645(-)$1	258	214	225	18.3921
CCAGCCCCGGC	chr12:133067155-133067507(+)$1	352	119	130	19.1764
CCAGCCCCGGC	chr19:39220510-39220789(+)$1	279	166	177	19.1764
CCAGGCCCGGC	chr7:1586396-1586696(-)$1	300	14	25	22.2156
CCAGCCCCGGC	chr2:233740629-233740916(+)$1	287	101	112	19.1764
CCUGUCCCCGC	chr11:65367027-65367341(-)$1	314	146	157	15.6470
CCAGGCCCAGC	chr19:47503654-47503912(+)$1	258	130	141	21.9215
CCUGUCCCGGC	chr19:47778303-47778615(+)$1	312	122	133	15.9411
CCAGUCUCUGC	chr16:3071838-3072138(+)$1	300	48	59	15.9411

#otherMatches

#Struct PSSM
iiiii!!ammm	chr7:2686467-2686687(+)$1	220	15	26	20.0588
gggggg!!ccc	chr17:79826377-79826637(-)$1	260	73	84	18.1960
HHHHHH}CCC}	chr3:196730105-196730417(-)$1	312	265	276	18.9803
occc55555dd	chr1:43200640-43200896(-)$1	256	27	38	17.1176
ddccc888888	chr16:1496230-1496483(-)$1	253	68	79	18.3921
EEBB{IIIIII	chr17:36861797-36862083(+)$1	286	55	66	15.7450
llldddd4444	chr11:60703910-60704252(+)$1	342	208	219	16.7254
cfffffflllf	chr7:938328-938662(-)$1	334	292	303	19.3725
qqqbb]a]ccc	chr17:79826504-79826764(-)$1	260	76	87	16.8235
DZZZGGGGGGG	chr16:31501600-31501902(-)$1	302	284	295	15.5490
4444ccc]ddd	chr10:102744143-102744385(+)$1	242	202	213	14.9607
eee[ccc[bbm	chr21:45565324-45565647(+)$1	323	196	207	15.5490
eee]dddd:cc	chr19:2015530-2015797(-)$1	267	171	182	18.6862
mmmmcccdddd	chr14:24774683-24774999(+)$1	316	247	258	19.6666
GGGGGGG{CCC	chr19:1089370-1089608(-)$1	238	32	43	17.3137
ee]eeeeefff	chr19:55998095-55998404(+)$1	309	89	100	18.9803
ggffffffwww	chr16:633106-633367(+)$1	261	55	66	20.3529
@GGGGGGGDDD	chr19:36640784-36641050(+)$1	266	200	211	23.8823
ndddd22ccc]	chr13:113751047-113751331(+)$1	284	238	249	16.9215
ggggggnnnnn	chr14:21560335-21560575(-)$1	240	119	130	16.3333
eeeeeoooooo	chr17:76671843-76672125(-)$1	282	50	61	21.9215
b::::dddddd	chr3:48511026-48511252(-)$1	226	181	192	23.8823
fffffbb[bba	chr18:77663901-77664190(-)$1	289	178	189	15.9411
"""ggggggg%	chr1:43201369-43201647(-)$1	278	147	158	14.5686
:::JJJJJJJJ	chr17:79890680-79890967(-)$1	287	272	283	14.8627
EKKEEEEEggg	chr17:79890578-79890880(-)$1	302	185	196	14.8627
uuuuuuuuuee	chr22:39131058-39131330(-)$1	272	14	25	19.2745
eee]ddddfff	chr19:41248262-41248520(-)$1	258	143	154	23.8823
ee]bbiiiiii	chr2:242757892-242758187(+)$1	295	217	228	18.7843
dd!!bblllbb	chr3:184063025-184063390(+)$1	365	256	267	14.5686
33ccceeeee6	chr16:31501299-31501581(-)$1	282	102	113	15.5490
eeeee333ccc	chr3:49394934-49395270(-)$1	336	227	238	15.8431
"""bbrrrrrr	chr16:31501747-31502037(-)$1	290	72	83	15.5490
ggggggg!!cc	chr1:55527113-55527327(+)$1	214	97	108	14.8627
"""eeeee[gg	chr8:144812271-144812519(-)$1	248	69	80	20.0588
YDDDDYYCCC:	chr12:120534706-120534967(-)$1	261	236	247	15.4509
ee]bbiiiiii	chr2:242757987-242758224(+)$1	237	122	133	18.7843
xxxccca]ddd	chr1:1374804-1375076(+)$1	272	47	58	18.0980
JJJJJJJJJJJ	chr11:1775138-1775414(-)$1	276	7	18	19.0784
dddccc:::ee	chr17:74078586-74078876(-)$1	290	127	138	23.8823
[ddddrrrrrr	chr22:50716560-50716794(-)$1	234	90	101	15.9411
cc]eeeee:DD	chr19:42880259-42880577(+)$1	318	28	39	16.0392
ggggggga[dd	chr17:80401387-80401645(-)$1	258	214	225	18.3921
cpppppppccc	chr12:133067155-133067507(+)$1	352	119	130	19.1764
^ccc4444eee	chr19:39220510-39220789(+)$1	279	166	177	19.1764
IIIIIIIeeee	chr7:1586396-1586696(-)$1	300	14	25	22.2156
7dddd22gggg	chr2:233740629-233740916(+)$1	287	101	112	19.1764
FFF}CCCbb[f	chr11:65367027-65367341(-)$1	314	146	157	15.6470
333dddd::::	chr19:47503654-47503912(+)$1	258	130	141	21.9215
ddooooooddd	chr19:47778303-47778615(+)$1	312	122	133	15.9411
ee::BB{JJJJ	chr16:3071838-3072138(+)$1	300	48	59	15.9411

#DB
(((((..(...	chr7:2686467-2686687(+)$1	1	15	26	20.0588
((((((..(((	chr17:79826377-79826637(-)$1	1	73	84	18.1960
)))))).))).	chr3:196730105-196730417(-)$1	1	265	276	18.9803
.))).....))	chr1:43200640-43200896(-)$1	1	27	38	17.1176
)))))......	chr16:1496230-1496483(-)$1	1	68	79	18.3921
((((.((((((	chr17:36861797-36862083(+)$1	1	55	66	15.7450
...))))....	chr11:60703910-60704252(+)$1	1	208	219	16.7254
)((((((...)	chr7:938328-938662(-)$1	1	292	303	19.3725
...)).).)))	chr17:79826504-79826764(-)$1	1	76	87	16.8235
)...)))))))	chr16:31501600-31501902(-)$1	1	284	295	15.5490
....))).)))	chr10:102744143-102744385(+)$1	1	202	213	14.9607
(((.(((.((.	chr21:45565324-45565647(+)$1	1	196	207	15.5490
))).)))).((	chr19:2015530-2015797(-)$1	1	171	182	18.6862
....)))))))	chr14:24774683-24774999(+)$1	1	247	258	19.6666
(((((((.(((	chr19:1089370-1089608(-)$1	1	32	43	17.3137
)).))))))))	chr19:55998095-55998404(+)$1	1	89	100	18.9803
))((((((...	chr16:633106-633367(+)$1	1	55	66	20.3529
.))))))))))	chr19:36640784-36641050(+)$1	1	200	211	23.8823
.))))..))).	chr13:113751047-113751331(+)$1	1	238	249	16.9215
((((((.....	chr14:21560335-21560575(-)$1	1	119	130	16.3333
(((((......	chr17:76671843-76672125(-)$1	1	50	61	21.9215
)....((((((	chr3:48511026-48511252(-)$1	1	181	192	23.8823
(((((((.(((	chr18:77663901-77664190(-)$1	1	178	189	15.9411
...(((((((.	chr1:43201369-43201647(-)$1	1	147	158	14.5686
...))))))))	chr17:79890680-79890967(-)$1	1	272	283	14.8627
(..((((((((	chr17:79890578-79890880(-)$1	1	185	196	14.8627
.........))	chr22:39131058-39131330(-)$1	1	14	25	19.2745
))).)))))))	chr19:41248262-41248520(-)$1	1	143	154	23.8823
)).))))))))	chr2:242757892-242758187(+)$1	1	217	228	18.7843
((..((...))	chr3:184063025-184063390(+)$1	1	256	267	14.5686
..)))))))).	chr16:31501299-31501581(-)$1	1	102	113	15.5490
)))))...)))	chr3:49394934-49395270(-)$1	1	227	238	15.8431
...((......	chr16:31501747-31502037(-)$1	1	72	83	15.5490
(((((((..((	chr1:55527113-55527327(+)$1	1	97	108	14.8627
...(((((.((	chr8:144812271-144812519(-)$1	1	69	80	20.0588
.))))..))).	chr12:120534706-120534967(-)$1	1	236	247	15.4509
)).))))))))	chr2:242757987-242758224(+)$1	1	122	133	18.7843
...)))).)))	chr1:1374804-1375076(+)$1	1	47	58	18.0980
(((((((((((	chr11:1775138-1775414(-)$1	1	7	18	19.0784
))))))...((	chr17:74078586-74078876(-)$1	1	127	138	23.8823
.((((......	chr22:50716560-50716794(-)$1	1	90	101	15.9411
)).))))).((	chr19:42880259-42880577(+)$1	1	28	39	16.0392
)))))))(.((	chr17:80401387-80401645(-)$1	1	214	225	18.3921
(.......)))	chr12:133067155-133067507(+)$1	1	119	130	19.1764
.)))....)))	chr19:39220510-39220789(+)$1	1	166	177	19.1764
(((((((((((	chr7:1586396-1586696(-)$1	1	14	25	22.2156
.))))..))))	chr2:233740629-233740916(+)$1	1	101	112	19.1764
))).)))((.(	chr11:65367027-65367341(-)$1	1	146	157	15.6470
...))))....	chr19:47503654-47503912(+)$1	1	130	141	21.9215
((......)))	chr19:47778303-47778615(+)$1	1	122	133	15.9411
))..((.((((	chr16:3071838-3072138(+)$1	1	48	59	15.9411

#PSSM
C : 0.78	G : 0.09	A : 0.05	U : 0.03	c : 0.01	
C : 0.92	G : 0.03	c : 0.01	U : 0.01	
A : 0.72	U : 0.09	G : 0.07	C : 0.07	c : 0.01	
G : 0.86	C : 0.05	U : 0.03	g : 0.01	A : 0.01	
G : 0.74	C : 0.11	U : 0.11	c : 0.01	
C : 0.88	G : 0.03	U : 0.03	c : 0.01	A : 0.01	
C : 0.96	c : 0.01	U : 0.01	
C : 0.84	G : 0.09	c : 0.01	U : 0.01	A : 0.01	
U : 0.52	G : 0.19	C : 0.13	A : 0.11	a : 0.01	
G : 0.84	U : 0.07	C : 0.05	g : 0.01	
C : 0.92	G : 0.03	c : 0.01	A : 0.01	

#score	918.8823529411774
#seq	51
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_UTR_m1_run1.nuc.txt

#NT
cauacacacgcgcacacauacacgcacacacacauccac	chr21:46915486-46915692(+)$1	206	124	163	82.9574
cacacacacacacacacacacacacacacacacagacac	chr22:38169846-38170170(+)$1	324	65	104	103.7021
cacacacccacauacacacacacacccacacacccacac	chr12:6955764-6956059(+)$1	295	75	114	88.5957
cacacacacacacacacacacacacacacacacacacac	chr13:30779873-30780120(-)$1	247	1	40	107.5319
cacacacacacacacacacacacacacacacacacacac	chr17:38296550-38296825(+)$1	275	77	116	107.5319
cauacacacacacccacacacacaaacacacacacacac	chr12:48438440-48438679(-)$1	239	14	53	95.8297
cauacacacgcgcacacauacacgcacacacacauccac	chr21:46915424-46915653(+)$1	229	186	225	82.9574
cacagacacgcacacgcacacgcgcacacacgcacacac	chr10:103880038-103880299(-)$1	261	131	170	81.7872
cacacacacacaaacacauacacacacauacacacacac	chrX:79931684-79931920(-)$1	236	36	75	94.5531
cacacacacacacacacacacacacacacacacacacac	chr16:24230893-24231137(+)$1	244	84	123	107.5319
cacacacacacacacacacacacacacacacacacacaG	chr16:4854730-4854990(-)$1	260	18	57	103.4893
cauacacacacacacacacacacacacacacacacacac	chr20:44512587-44512876(+)$1	289	154	193	104.9787
cauacacacacacacacacacacacacacacacacacac	chr20:44512676-44512971(+)$1	295	65	104	104.9787
CCAacacacacacacacacacacacacacacacacacac	chr1:65881002-65881267(+)$1	265	127	166	99.5531
cacacacacacacacacacacucucacacacacucacac	chr4:1019035-1019267(+)$1	232	19	58	94.1276
cacacacacacacacacacacacacacacacacacacac	chr16:67209980-67210215(-)$1	235	193	232	107.5319
cacacacacacacacacacacacacacacacacacacac	chr14:100840132-100840417(-)$1	285	216	255	107.5319
cacacacacacacacacacacacacacacacacacacac	chr1:36032168-36032440(+)$1	272	62	101	107.5319
cacacacacacacacacacacacacacacacacacaGUC	chr13:30779640-30779924(-)$1	284	1	40	97.9574
cacacacacacacacacacacacacacacacacagacac	chr22:38169768-38170046(+)$1	278	143	182	103.7021
CCUacacacacacacacacacacacacacacacacacac	chr12:105155171-105155460(+)$1	289	68	107	100.6170
Aacacacacacacacacacacacacacacacacacacac	chr10:50534924-50535238(+)$1	314	44	83	103.0638
cacacacacacacacacacacacacacacacacacacaA	chr5:158712213-158712465(+)$1	252	1	40	103.2765
cacacacacacacacacacacacacacacacacacacac	chr16:24230968-24231188(+)$1	220	9	48	107.5319
cacacacacacacacacacacacacacacacacacacac	chr17:43101422-43101696(-)$1	274	1	40	107.5319
cacacacacacacacacacacacacacacacacacacac	chr5:158712143-158712413(+)$1	270	61	100	107.5319
Gacacacacacacacacacacacacacacacacacacac	chr6:41537773-41538027(+)$1	254	43	82	103.0638
cacacacacacacacacacacacacacacacacacacac	chr22:21242443-21242727(+)$1	284	156	195	107.5319
cacacacacacacacacacacacacacacacacacacac	chr16:67209714-67210005(-)$1	291	1	40	107.5319
cacagacacacacacacacacacacacacacacacacac	chr12:102792787-102793067(-)$1	280	138	177	102.9574
cacacacacacacaugcauacacacacacacacagccac	chr5:139494648-139494873(+)$1	225	106	145	87.2127
cacacacacacacacacacacacacacacacacacacac	chr7:100075801-100076077(-)$1	276	53	92	107.5319
cauacacacgcgcacacauacacgcacacacacauccac	chr21:46915492-46915720(+)$1	228	118	157	82.9574
cacacacacacacacacacacacacacacacacacacac	chrX:118750886-118751173(-)$1	287	62	101	107.5319
CUCUcacacacacacacacacgcacacacacacacacaG	chr3:128532365-128532649(+)$1	284	59	98	89.8723
cauacacacgcgcacacauacacgcacacacacauccac	chr21:46915604-46915808(+)$1	204	6	45	82.9574
cacacacacacacacacacacacacacacacacacacac	chr16:67209829-67210085(-)$1	256	63	102	107.5319
cucacacacacacacacacacacacacacacacacacau	chr7:76038623-76038898(+)$1	275	15	54	99.0212
UAUacacacacacacacacacacacacacacacacacac	chr5:122165409-122165705(+)$1	296	58	97	100.6170
cauacacacacacccacacacacaaacacacacacacac	chr12:48438586-48438840(-)$1	254	175	214	95.8297
cauacacacgcgcacacauacacgcacacacacauccac	chr21:46915608-46915819(+)$1	211	2	41	82.9574
Uacacacacacacacacacacacacacacacacacgcac	chr19:41938663-41938958(-)$1	295	235	274	99.0212
cacacacacacacacacacacacacacacacacacacaU	chr3:148890046-148890304(+)$1	258	59	98	103.3829
cacacacacacacacacacacacacacacacacacacaG	chr16:4854790-4855008(-)$1	218	36	75	103.4893
cacacacacacacacacacacacacacacacacacacac	chr5:158712051-158712336(+)$1	285	153	192	107.5319
cacacacacacacacacacacacacacacacacacacac	chr16:24230937-24231168(+)$1	231	40	79	107.5319

#otherMatches

#Struct PSSM
c::::::::::::::::::::::::::::::::::::::	chr15:40845967-40846239(-)$1	272	74	113	107.5319
aqqqqqqqqa]ccc:::::::::ddddwwwwwwwwwwww	chr21:46915486-46915692(+)$1	206	124	163	82.9574
B:::::::::::::::::::::::::::GGGGGGG{CCC	chr22:38169846-38170170(+)$1	324	65	104	103.7021
DDLLLCCC:::::::::::::::::::::::::::::::	chr12:6955764-6956059(+)$1	295	75	114	88.5957
:::::::::::::::::::::::::::::::::::::::	chr13:30779873-30780120(-)$1	247	1	40	107.5319
:::::::::::::::::::::::::::::::::::::::	chr17:38296550-38296825(+)$1	275	77	116	107.5319
GGGG:::::::::::::::::::::::::::::::::::	chr12:48438440-48438679(-)$1	239	14	53	95.8297
000000000a]hhhhhhhh::::BB::::::::::::::	chr21:46915424-46915653(+)$1	229	186	225	82.9574
qqqqqqqqccc::::::::::cccooooooccc::::::	chr10:103880038-103880299(-)$1	261	131	170	81.7872
:::::::::::::::::::::::::::::::::::::::	chrX:79931684-79931920(-)$1	236	36	75	94.5531
b::::::::::::::::::::::::::::::::::::::	chr16:24230893-24231137(+)$1	244	84	123	107.5319
oooooffffff::::::::::::::::::::::::DDDD	chr16:4854730-4854990(-)$1	260	18	57	103.4893
:::::::::::::::::::::::::::::::::::::::	chr20:44512587-44512876(+)$1	289	154	193	104.9787
:::::::::::::::::::::::::::::::::::::::	chr20:44512676-44512971(+)$1	295	65	104	104.9787
::::::::::::::::::::::::::::::::::::::d	chr1:65881002-65881267(+)$1	265	127	166	99.5531
B:::::::::::::::::::eeeee[cccssssssssss	chr4:1019035-1019267(+)$1	232	19	58	94.1276
:::::::::::::::::::::::::::::::::::::::	chr16:67209980-67210215(-)$1	235	193	232	107.5319
::::::::::::::::::::::::::::::bb!!eeeee	chr14:100840132-100840417(-)$1	285	216	255	107.5319
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:36032168-36032440(+)$1	272	62	101	107.5319
:::::::::::::::::::::::::::::FFFFFF{FFF	chr13:30779640-30779924(-)$1	284	1	40	97.9574
:::::::::::::::::::::::::::::::::::::::	chr22:38169768-38170046(+)$1	278	143	182	103.7021
:::::::::::::::::::::::::::::::::::::::	chr12:105155171-105155460(+)$1	289	68	107	100.6170
F::::::::::::::::::::::::::::::::::::::	chr10:50534924-50535238(+)$1	314	44	83	103.0638
::BB{CCCLLLEEEEENNNNNCCCLLLDDDD:cccnnnn	chr5:158712213-158712465(+)$1	252	1	40	103.2765
:::::::::::::::::::::::::::::::::::::::	chr16:24230968-24231188(+)$1	220	9	48	107.5319
:::::::::::::::::::::::::::::::::::::::	chr17:43101422-43101696(-)$1	274	1	40	107.5319
BB{CCCLLLEEEEENNNNNCCCLLLDDDD::::::::::	chr5:158712143-158712413(+)$1	270	61	100	107.5319
dd::::::::::::::::::::::::::::::::::===	chr6:41537773-41538027(+)$1	254	43	82	103.0638
d4444ccc::::::::::::::::::::::::::::::D	chr22:21242443-21242727(+)$1	284	156	195	107.5319
:::::::::::::::::::::::::::::::::::::::	chr16:67209714-67210005(-)$1	291	1	40	107.5319
qqqbb::::::::::::::::::::::::::::::::::	chr12:102792787-102793067(-)$1	280	138	177	102.9574
d:::::::::::::CCC::::::::::::::::::::::	chr5:139494648-139494873(+)$1	225	106	145	87.2127
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:100075801-100076077(-)$1	276	53	92	107.5319
aqqqqqqqqa]ccc:::::::::GGGGGGG\\\\\\\\\	chr21:46915492-46915720(+)$1	228	118	157	82.9574
ccc::::::::::::::::::::::::::::DDDD{GGG	chrX:118750886-118751173(-)$1	287	62	101	107.5319
:::::::::::::::::::cccbb^^^^^^^^^^^^^^^	chr3:128532365-128532649(+)$1	284	59	98	89.8723
aqqqqqqqqa]ccc:::::::::ddddwwwwwwwwwwww	chr21:46915604-46915808(+)$1	204	6	45	82.9574
:::::::::::::::::::::::::::::::::::::::	chr16:67209829-67210085(-)$1	256	63	102	107.5319
EEEEE:::::::::::::::::::::::::::::::::b	chr7:76038623-76038898(+)$1	275	15	54	99.0212
:::::::::::::::::::::::::::::::::::::::	chr5:122165409-122165705(+)$1	296	58	97	100.6170
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:48438586-48438840(-)$1	254	175	214	95.8297
:::::::::cccssssssssssccc::::::::::::::	chr21:46915608-46915819(+)$1	211	2	41	82.9574
d::::::::::::::::::::::::::::::::::::::	chr19:41938663-41938958(-)$1	295	235	274	99.0212
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hh	chr3:148890046-148890304(+)$1	258	59	98	103.3829
oooooggggggg22ccc::::::::::::::::::hhhh	chr16:4854790-4855008(-)$1	218	36	75	103.4893
:::::::::::::::::::::EEEEENNNNNCCCLLLDD	chr5:158712051-158712336(+)$1	285	153	192	107.5319
:::::::::::::::::::::::::::::::::::::::	chr16:24230937-24231168(+)$1	231	40	79	107.5319

#DB
)......................................	chr15:40845967-40846239(-)$1	1	74	113	107.5319
(........).))).........((((............	chr21:46915486-46915692(+)$1	1	124	163	82.9574
)...........................(((((((.(((	chr22:38169846-38170170(+)$1	1	65	104	103.7021
((...(((...............................	chr12:6955764-6956059(+)$1	1	75	114	88.5957
.......................................	chr13:30779873-30780120(-)$1	1	1	40	107.5319
.......................................	chr17:38296550-38296825(+)$1	1	77	116	107.5319
((((...................................	chr12:48438440-48438679(-)$1	1	14	53	95.8297
.........).))))))))....))..............	chr21:46915424-46915653(+)$1	1	186	225	82.9574
........)))..........(((......)))......	chr10:103880038-103880299(-)$1	1	131	170	81.7872
.......................................	chrX:79931684-79931920(-)$1	1	36	75	94.5531
)......................................	chr16:24230893-24231137(+)$1	1	84	123	107.5319
.....))))))........................((((	chr16:4854730-4854990(-)$1	1	18	57	103.4893
.......................................	chr20:44512587-44512876(+)$1	1	154	193	104.9787
.......................................	chr20:44512676-44512971(+)$1	1	65	104	104.9787
......................................(	chr1:65881002-65881267(+)$1	1	127	166	99.5531
(...................(((((.(((..........	chr4:1019035-1019267(+)$1	1	19	58	94.1276
.......................................	chr16:67209980-67210215(-)$1	1	193	232	107.5319
..............................((..(((((	chr14:100840132-100840417(-)$1	1	216	255	107.5319
.......................................	chr1:36032168-36032440(+)$1	1	62	101	107.5319
.............................((((((.(((	chr13:30779640-30779924(-)$1	1	1	40	97.9574
.......................................	chr22:38169768-38170046(+)$1	1	143	182	103.7021
.......................................	chr12:105155171-105155460(+)$1	1	68	107	100.6170
(......................................	chr10:50534924-50535238(+)$1	1	44	83	103.0638
..((.(((...(((((.....(((...((((.(((....	chr5:158712213-158712465(+)$1	1	1	40	103.2765
.......................................	chr16:24230968-24231188(+)$1	1	9	48	107.5319
.......................................	chr17:43101422-43101696(-)$1	1	1	40	107.5319
((.(((...(((((.....(((...((((..........	chr5:158712143-158712413(+)$1	1	61	100	107.5319
))..................................(((	chr6:41537773-41538027(+)$1	1	43	82	103.0638
)....)))..............................)	chr22:21242443-21242727(+)$1	1	156	195	107.5319
.......................................	chr16:67209714-67210005(-)$1	1	1	40	107.5319
...))..................................	chr12:102792787-102793067(-)$1	1	138	177	102.9574
).............)))......................	chr5:139494648-139494873(+)$1	1	106	145	87.2127
.......................................	chr7:100075801-100076077(-)$1	1	53	92	107.5319
(........).))).........))))))).........	chr21:46915492-46915720(+)$1	1	118	157	82.9574
)))............................((((.(((	chrX:118750886-118751173(-)$1	1	62	101	107.5319
...................(((((...............	chr3:128532365-128532649(+)$1	1	59	98	89.8723
(........).))).........((((............	chr21:46915604-46915808(+)$1	1	6	45	82.9574
.......................................	chr16:67209829-67210085(-)$1	1	63	102	107.5319
(((((.................................(	chr7:76038623-76038898(+)$1	1	15	54	99.0212
.......................................	chr5:122165409-122165705(+)$1	1	58	97	100.6170
((((((.................................	chr12:48438586-48438840(-)$1	1	175	214	95.8297
.........(((..........)))..............	chr21:46915608-46915819(+)$1	1	2	41	82.9574
)......................................	chr19:41938663-41938958(-)$1	1	235	274	99.0212
.....................................))	chr3:148890046-148890304(+)$1	1	59	98	103.3829
.....)))))))..)))..................((((	chr16:4854790-4855008(-)$1	1	36	75	103.4893
.....................(((((.....(((...((	chr5:158712051-158712336(+)$1	1	153	192	107.5319
.......................................	chr16:24230937-24231168(+)$1	1	40	79	107.5319

#PSSM
c : 0.85	C : 0.06	U : 0.04	A : 0.02	G : 0.02	
a : 0.89	C : 0.04	U : 0.02	u : 0.02	A : 0.02	
c : 0.72	u : 0.19	U : 0.04	A : 0.02	C : 0.02	
a : 0.97	U : 0.02	
c : 0.95	g : 0.04	
a : 1.00	
c : 1.00	
a : 0.97	c : 0.02	
c : 1.00	
a : 0.87	g : 0.12	
c : 1.00	
a : 0.89	g : 0.10	
c : 0.95	u : 0.02	a : 0.02	
a : 0.95	c : 0.04	
c : 0.97	u : 0.02	
a : 0.95	g : 0.04	
c : 1.00	
a : 1.00	
c : 0.85	u : 0.14	
a : 1.00	
c : 1.00	
a : 0.93	g : 0.04	u : 0.02	
c : 1.00	
a : 0.85	g : 0.12	u : 0.02	
c : 0.95	a : 0.04	
a : 0.97	c : 0.02	
c : 1.00	
a : 1.00	
c : 0.97	u : 0.02	
a : 1.00	
c : 1.00	
a : 0.97	g : 0.02	
c : 1.00	
a : 0.95	c : 0.02	u : 0.02	
c : 0.82	u : 0.10	g : 0.06	
a : 0.85	c : 0.12	g : 0.02	
c : 0.97	G : 0.02	
a : 0.97	U : 0.02	
c : 0.85	G : 0.06	C : 0.02	A : 0.02	u : 0.02	U : 0.02	

#score	4707.510638297875
#seq	47
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_CDS_m3_run2.nuc.txt

#NT
UGGAG	chr20:17600232-17600473(-)$1	241	122	127	15.0000
UGGAG	chr22:39917731-39917986(+)$1	255	76	81	15.0000
UGGAG	chr12:6979336-6979545(+)$1	209	27	32	15.0000
UGGAG	chr19:12907680-12908001(-)$1	321	243	248	15.0000
UGGAG	chr16:85834731-85834990(+)$1	259	229	234	15.0000
UGGAG	chr15:64448218-64448444(-)$1	226	116	121	15.0000
UGGAG	chr14:23033906-23034137(-)$1	231	132	137	15.0000
UGGAG	chr11:33731428-33731778(-)$1	350	89	94	15.0000
UGGAG	chr19:5691847-5692156(-)$1	309	25	30	15.0000
UGGAG	chr19:1440000-1440278(+)$1	278	136	141	15.0000
UGGAG	chr1:2125003-2125261(-)$1	258	108	113	15.0000
UGGAG	chr14:103986155-103986475(-)$1	320	168	173	15.0000
UGGAG	chr17:80015705-80016016(-)$1	311	58	63	15.0000
UGGAG	chr4:6698598-6698844(+)$1	246	74	79	15.0000
UGGAG	chr16:88781810-88782128(-)$1	318	27	32	15.0000
UGGAG	chr19:18704221-18704489(-)$1	268	147	152	15.0000
UGGAG	chr6:31805040-31805300(+)$1	260	66	71	15.0000
UGGAG	chr1:20978772-20979059(-)$1	287	214	219	15.0000
UGGAG	chr17:79994055-79994280(-)$1	225	153	158	15.0000
UGGAG	chr11:18428720-18428941(+)$1	221	160	165	15.0000
UGGAG	chr14:105219426-105219762(+)$1	336	321	326	15.0000
UGGAG	chr20:34287523-34287767(+)$1	244	228	233	15.0000
UGGAG	chr15:90328394-90328694(-)$1	300	20	25	15.0000
UGGAG	chr19:8367158-8367470(-)$1	312	280	285	15.0000
UGGAG	chr6:75953332-75953602(-)$1	270	213	218	15.0000
UGGAG	chr14:74946798-74947090(-)$1	292	47	52	15.0000
UGGAG	chr12:56119247-56119501(-)$1	254	15	20	15.0000
UGGAG	chr20:60884368-60884599(-)$1	231	161	166	15.0000
UGGAG	chr20:34287567-34287785(+)$1	218	184	189	15.0000
UGGAG	chr17:6917537-6917907(+)$1	370	228	233	15.0000
UGGAG	chr17:79994007-79994255(-)$1	248	128	133	15.0000
UGGAG	chr19:12845131-12845405(-)$1	274	130	135	15.0000
UGGAG	chr6:143816710-143816989(-)$1	279	48	53	15.0000
UGGAG	chr1:161192616-161192864(-)$1	248	60	65	15.0000
UGGAG	chr16:29815216-29815485(+)$1	269	0	5	15.0000
UGGAG	chr12:56510887-56511095(+)$1	208	85	90	15.0000
UGGAG	chr20:60884399-60884632(-)$1	233	194	199	15.0000
UGGAG	chr15:44085806-44086029(+)$1	223	210	215	15.0000
UGGAG	chr22:24953531-24953801(+)$1	270	2	7	15.0000
UGGAG	chr1:44443555-44443801(+)$1	246	185	190	15.0000
UGGAG	chr6:41705367-41705604(-)$1	237	99	104	15.0000
UGGAG	chr2:98262460-98262714(+)$1	254	187	192	15.0000
UGGAG	chr19:12845248-12845549(-)$1	301	274	279	15.0000
UGGAG	chr2:98263473-98263703(+)$1	230	92	97	15.0000
UGGAG	chr16:2292961-2293290(-)$1	329	10	15	15.0000
UGGAG	chr3:48445724-48446003(-)$1	279	19	24	15.0000
UGGAG	chr17:39679986-39680298(-)$1	312	93	98	15.0000
UGGAG	chr2:27322481-27322764(+)$1	283	164	169	15.0000
UGGAG	chr12:9220308-9220535(-)$1	227	54	59	15.0000
UGGAG	chr6:31919049-31919297(+)$1	248	160	165	15.0000
UGGAG	chr3:49159039-49159308(-)$1	269	91	96	15.0000
UGGAG	chr14:23566986-23567362(+)$1	376	110	115	15.0000
UGGAG	chr3:184052587-184052823(+)$1	236	130	135	15.0000
UGGAG	chr20:60884721-60884983(-)$1	262	37	42	15.0000
UGGAG	chr16:29816023-29816317(+)$1	294	11	16	15.0000
UGGAG	chr20:33867291-33867525(-)$1	234	81	86	15.0000
UGGAG	chr7:99057609-99057917(-)$1	308	125	130	15.0000
UGGAG	chr20:60884296-60884532(-)$1	236	94	99	15.0000
UGGAG	chr6:31919097-31919350(+)$1	253	112	117	15.0000

#otherMatches

#Struct PSSM
eee::	chr19:1244221-1244513(+)$1	292	108	113	15.0000
ddd22	chr20:17600232-17600473(-)$1	241	122	127	15.0000
ccc77	chr22:39917731-39917986(+)$1	255	76	81	15.0000
ggggg	chr12:6979336-6979545(+)$1	209	27	32	15.0000
ggggg	chr19:12907680-12908001(-)$1	321	243	248	15.0000
]eeee	chr16:85834731-85834990(+)$1	259	229	234	15.0000
ddnnn	chr15:64448218-64448444(-)$1	226	116	121	15.0000
eeeee	chr14:23033906-23034137(-)$1	231	132	137	15.0000
eeeee	chr11:33731428-33731778(-)$1	350	89	94	15.0000
eee[d	chr19:5691847-5692156(-)$1	309	25	30	15.0000
ccc::	chr19:1440000-1440278(+)$1	278	136	141	15.0000
ee::A	chr1:2125003-2125261(-)$1	258	108	113	15.0000
qffff	chr14:103986155-103986475(-)$1	320	168	173	15.0000
ma]bb	chr17:80015705-80016016(-)$1	311	58	63	15.0000
cccoo	chr4:6698598-6698844(+)$1	246	74	79	15.0000
EEECC	chr16:88781810-88782128(-)$1	318	27	32	15.0000
]dddd	chr19:18704221-18704489(-)$1	268	147	152	15.0000
dd[dd	chr6:31805040-31805300(+)$1	260	66	71	15.0000
ggggg	chr1:20978772-20979059(-)$1	287	214	219	15.0000
cccqq	chr17:79994055-79994280(-)$1	225	153	158	15.0000
fffff	chr11:18428720-18428941(+)$1	221	160	165	15.0000
YFFFF	chr14:105219426-105219762(+)$1	336	321	326	15.0000
GGG}B	chr20:34287523-34287767(+)$1	244	228	233	15.0000
EEEEE	chr15:90328394-90328694(-)$1	300	20	25	15.0000
2eeee	chr19:8367158-8367470(-)$1	312	280	285	15.0000
\\\\\	chr6:75953332-75953602(-)$1	270	213	218	15.0000
iiiii	chr14:74946798-74947090(-)$1	292	47	52	15.0000
::::G	chr12:56119247-56119501(-)$1	254	15	20	15.0000
}BB}B	chr20:60884368-60884599(-)$1	231	161	166	15.0000
:dddd	chr20:34287567-34287785(+)$1	218	184	189	15.0000
bb]gg	chr17:6917537-6917907(+)$1	370	228	233	15.0000
cccqq	chr17:79994007-79994255(-)$1	248	128	133	15.0000
mmggg	chr19:12845131-12845405(-)$1	274	130	135	15.0000
GGGG{	chr6:143816710-143816989(-)$1	279	48	53	15.0000
a333e	chr1:161192616-161192864(-)$1	248	60	65	15.0000
:::::	chr16:29815216-29815485(+)$1	269	0	5	15.0000
ma]bb	chr12:56510887-56511095(+)$1	208	85	90	15.0000
iiimm	chr20:60884399-60884632(-)$1	233	194	199	15.0000
eBB}B	chr15:44085806-44086029(+)$1	223	210	215	15.0000
dd!!d	chr22:24953531-24953801(+)$1	270	2	7	15.0000
mmmmb	chr1:44443555-44443801(+)$1	246	185	190	15.0000
fffff	chr6:41705367-41705604(-)$1	237	99	104	15.0000
:EEEE	chr2:98262460-98262714(+)$1	254	187	192	15.0000
$$$$$	chr19:12845248-12845549(-)$1	301	274	279	15.0000
:::JJ	chr2:98263473-98263703(+)$1	230	92	97	15.0000
:bb[c	chr16:2292961-2293290(-)$1	329	10	15	15.0000
DD{FF	chr3:48445724-48446003(-)$1	279	19	24	15.0000
%%%%=	chr17:39679986-39680298(-)$1	312	93	98	15.0000
dddoo	chr2:27322481-27322764(+)$1	283	164	169	15.0000
]ffff	chr12:9220308-9220535(-)$1	227	54	59	15.0000
JJJJJ	chr6:31919049-31919297(+)$1	248	160	165	15.0000
hhfff	chr3:49159039-49159308(-)$1	269	91	96	15.0000
CCCKK	chr14:23566986-23567362(+)$1	376	110	115	15.0000
qqqqq	chr3:184052587-184052823(+)$1	236	130	135	15.0000
:iiii	chr20:60884721-60884983(-)$1	262	37	42	15.0000
ccc[g	chr16:29816023-29816317(+)$1	294	11	16	15.0000
ccc33	chr20:33867291-33867525(-)$1	234	81	86	15.0000
=====	chr7:99057609-99057917(-)$1	308	125	130	15.0000
iiimm	chr20:60884296-60884532(-)$1	236	94	99	15.0000
c]ddd	chr6:31919097-31919350(+)$1	253	112	117	15.0000

#DB
)))..	chr19:1244221-1244513(+)$1	1	108	113	15.0000
)))..	chr20:17600232-17600473(-)$1	1	122	127	15.0000
)))..	chr22:39917731-39917986(+)$1	1	76	81	15.0000
(((((	chr12:6979336-6979545(+)$1	1	27	32	15.0000
)))))	chr19:12907680-12908001(-)$1	1	243	248	15.0000
.))))	chr16:85834731-85834990(+)$1	1	229	234	15.0000
((...	chr15:64448218-64448444(-)$1	1	116	121	15.0000
(((((	chr14:23033906-23034137(-)$1	1	132	137	15.0000
)))))	chr11:33731428-33731778(-)$1	1	89	94	15.0000
(((.(	chr19:5691847-5692156(-)$1	1	25	30	15.0000
)))..	chr19:1440000-1440278(+)$1	1	136	141	15.0000
))..)	chr1:2125003-2125261(-)$1	1	108	113	15.0000
.))))	chr14:103986155-103986475(-)$1	1	168	173	15.0000
.).))	chr17:80015705-80016016(-)$1	1	58	63	15.0000
(((..	chr4:6698598-6698844(+)$1	1	74	79	15.0000
(((((	chr16:88781810-88782128(-)$1	1	27	32	15.0000
.))))	chr19:18704221-18704489(-)$1	1	147	152	15.0000
((.((	chr6:31805040-31805300(+)$1	1	66	71	15.0000
)))))	chr1:20978772-20979059(-)$1	1	214	219	15.0000
(((..	chr17:79994055-79994280(-)$1	1	153	158	15.0000
)))))	chr11:18428720-18428941(+)$1	1	160	165	15.0000
.))))	chr14:105219426-105219762(+)$1	1	321	326	15.0000
))).)	chr20:34287523-34287767(+)$1	1	228	233	15.0000
(((((	chr15:90328394-90328694(-)$1	1	20	25	15.0000
.))))	chr19:8367158-8367470(-)$1	1	280	285	15.0000
.....	chr6:75953332-75953602(-)$1	1	213	218	15.0000
(((((	chr14:74946798-74947090(-)$1	1	47	52	15.0000
....(	chr12:56119247-56119501(-)$1	1	15	20	15.0000
.)).)	chr20:60884368-60884599(-)$1	1	161	166	15.0000
.((((	chr20:34287567-34287785(+)$1	1	184	189	15.0000
)).))	chr17:6917537-6917907(+)$1	1	228	233	15.0000
(((..	chr17:79994007-79994255(-)$1	1	128	133	15.0000
..)))	chr19:12845131-12845405(-)$1	1	130	135	15.0000
((((.	chr6:143816710-143816989(-)$1	1	48	53	15.0000
)...)	chr1:161192616-161192864(-)$1	1	60	65	15.0000
.....	chr16:29815216-29815485(+)$1	1	0	5	15.0000
.).))	chr12:56510887-56511095(+)$1	1	85	90	15.0000
(((..	chr20:60884399-60884632(-)$1	1	194	199	15.0000
))).)	chr15:44085806-44086029(+)$1	1	210	215	15.0000
((..(	chr22:24953531-24953801(+)$1	1	2	7	15.0000
....)	chr1:44443555-44443801(+)$1	1	185	190	15.0000
(((((	chr6:41705367-41705604(-)$1	1	99	104	15.0000
.))))	chr2:98262460-98262714(+)$1	1	187	192	15.0000
.....	chr19:12845248-12845549(-)$1	1	274	279	15.0000
...))	chr2:98263473-98263703(+)$1	1	92	97	15.0000
.((.(	chr16:2292961-2293290(-)$1	1	10	15	15.0000
((.((	chr3:48445724-48446003(-)$1	1	19	24	15.0000
....(	chr17:39679986-39680298(-)$1	1	93	98	15.0000
(((..	chr2:27322481-27322764(+)$1	1	164	169	15.0000
.))))	chr12:9220308-9220535(-)$1	1	54	59	15.0000
)))))	chr6:31919049-31919297(+)$1	1	160	165	15.0000
))(((	chr3:49159039-49159308(-)$1	1	91	96	15.0000
(((..	chr14:23566986-23567362(+)$1	1	110	115	15.0000
.....	chr3:184052587-184052823(+)$1	1	130	135	15.0000
.((((	chr20:60884721-60884983(-)$1	1	37	42	15.0000
(((.(	chr16:29816023-29816317(+)$1	1	11	16	15.0000
)))..	chr20:33867291-33867525(-)$1	1	81	86	15.0000
(((((	chr7:99057609-99057917(-)$1	1	125	130	15.0000
(((..	chr20:60884296-60884532(-)$1	1	94	99	15.0000
).)))	chr6:31919097-31919350(+)$1	1	112	117	15.0000

#PSSM
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	

#score	900.0000000000005
#seq	60
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_CDS_m1_run1.nuc.txt

#NT
CCUG	chr16:2514456-2514696(+)$1	240	31	35	11.9999
CCUG	chr19:45211133-45211386(-)$1	253	61	65	11.9999
CCUG	chr9:139137424-139137635(-)$1	211	37	41	11.9999
CCUG	chr14:23770956-23771174(+)$1	218	110	114	11.9999
CCUG	chr19:39440661-39440866(-)$1	205	49	53	11.9999
CCUG	chr22:42334910-42335164(-)$1	254	53	57	11.9999
CCUG	chr17:48545935-48546191(+)$1	256	249	253	11.9999
CCUG	chr5:453527-453835(+)$1	308	6	10	11.9999
CCUG	chr13:115009269-115009520(+)$1	251	88	92	11.9999
CCUG	chrX:100666915-100667154(+)$1	239	116	120	11.9999
CCUG	chr10:13698546-13698809(+)$1	263	70	74	11.9999
CCUG	chr14:24884061-24884300(+)$1	239	7	11	11.9999
CCUG	chr21:43166134-43166420(-)$1	286	12	16	11.9999
CCUG	chr1:1242647-1242908(-)$1	261	65	69	11.9999
CCUG	chr2:32582190-32582445(+)$1	255	28	32	11.9999
CCUG	chr19:39440774-39440991(-)$1	217	8	12	11.9999
CCUG	chr7:96635263-96635546(-)$1	283	60	64	11.9999
ccug	chr15:65425727-65425983(-)$1	256	213	217	11.9999
CCUG	chr17:57971044-57971293(+)$1	249	93	97	11.9999
CCUG	chr1:1334368-1334654(-)$1	286	126	130	11.9999
CCUG	chr2:220099899-220100134(+)$1	235	57	61	11.9999
CCUG	chr19:39440716-39440974(-)$1	258	59	63	11.9999
CCUG	chr1:2121641-2121892(-)$1	251	30	34	11.9999
CCUG	chr2:27448530-27448807(+)$1	277	11	15	11.9999
CCUG	chr4:22517180-22517449(-)$1	269	242	246	11.9999
CCUG	chr16:475972-476183(+)$1	211	139	143	11.9999
CCUG	chr20:45353827-45354116(+)$1	289	6	10	11.9999
CCUG	chr8:145113354-145113607(-)$1	253	129	133	11.9999
CCUG	chr19:49002683-49002951(-)$1	268	62	66	11.9999
CCUG	chr22:38902121-38902348(-)$1	227	105	109	11.9999
CCUG	chr15:41812789-41813075(-)$1	286	0	4	11.9999
ccUG	chr16:475937-476151(+)$1	214	13	17	11.9999
CCUG	chr19:39440666-39440872(-)$1	206	55	59	11.9999
CCUG	chr2:242275399-242275625(+)$1	226	60	64	11.9999
CCUG	chr11:64039047-64039278(+)$1	231	10	14	11.9999
CCUG	chr3:38159168-38159442(-)$1	274	25	29	11.9999
CCUG	chr17:74288391-74288635(-)$1	244	24	28	11.9999
CCUG	chr7:72992532-72992817(-)$1	285	65	69	11.9999
CCUG	chr11:64039015-64039247(+)$1	232	27	31	11.9999
ccUG	chr11:71935947-71936225(+)$1	278	15	19	11.9999
CCUG	chr8:145689409-145689720(-)$1	311	84	88	11.9999
CCUG	chr20:34241156-34241368(-)$1	212	17	21	11.9999
CCUG	chr1:43148822-43149060(+)$1	238	8	12	11.9999
CCUG	chr22:29446470-29446764(+)$1	294	31	35	11.9999
CCUG	chr12:54577509-54577753(-)$1	244	43	47	11.9999
CCUG	chr18:77894632-77894891(+)$1	259	11	15	11.9999
CCUg	chr8:11566104-11566368(+)$1	264	64	68	11.9999
CCUG	chr16:31519349-31519644(-)$1	295	42	46	11.9999
CCUG	chr16:2264600-2264868(-)$1	268	228	232	11.9999
CCUG	chr15:65425419-65425706(-)$1	287	6	10	11.9999
CCUG	chr15:45695132-45695380(+)$1	248	97	101	11.9999
CCUG	chr17:4686070-4686323(+)$1	253	2	6	11.9999
ccug	chr21:47612914-47613160(-)$1	246	129	133	11.9999
CCUG	chr7:73009988-73010224(-)$1	236	111	115	11.9999
CCUG	chr20:34241138-34241356(-)$1	218	5	9	11.9999
CCUG	chr11:64875936-64876205(+)$1	269	158	162	11.9999
ccug	chr21:47612755-47612987(-)$1	232	73	77	11.9999
CCUG	chr19:39440611-39440827(-)$1	216	10	14	11.9999
CCUG	chr11:67166515-67166797(-)$1	282	34	38	11.9999
CCUG	chr2:32582272-32582525(+)$1	253	172	176	11.9999
CCUG	chr7:99817617-99817873(-)$1	256	136	140	11.9999
CCUG	chr2:220042895-220043178(+)$1	283	107	111	11.9999
CCUG	chr2:32582245-32582472(+)$1	227	199	203	11.9999
CCUG	chr16:69364264-69364550(-)$1	286	229	233	11.9999
CCUG	chr22:20749605-20749899(+)$1	294	34	38	11.9999
CCUG	chr12:110841251-110841525(-)$1	274	215	219	11.9999
CCUG	chr6:43183941-43184214(+)$1	273	153	157	11.9999
CCUG	chr2:24149442-24149693(-)$1	251	41	45	11.9999
CCUG	chr1:1334456-1334754(-)$1	298	30	34	11.9999
CCUG	chr19:39440635-39440861(-)$1	226	44	48	11.9999
CCUG	chr3:49742889-49743138(+)$1	249	7	11	11.9999
CCUG	chr9:131196676-131196910(+)$1	234	37	41	11.9999
CCUG	chr20:34241168-34241379(-)$1	211	28	32	11.9999
CCUG	chr2:219563714-219563959(+)$1	245	48	52	11.9999
CCUG	chr19:12780982-12781271(-)$1	289	40	44	11.9999
CCUG	chr7:128864948-128865208(+)$1	260	11	15	11.9999
CCUG	chr9:139701014-139701313(-)$1	299	3	7	11.9999
ccug	chr4:22517267-22517496(-)$1	229	14	18	11.9999
CCUG	chr22:40742480-40742730(+)$1	250	8	12	11.9999
CCUG	chr19:17338530-17338761(+)$1	231	110	114	11.9999
CCUG	chr17:39913739-39913987(-)$1	248	171	175	11.9999
CCUG	chr20:43019142-43019414(-)$1	272	94	98	11.9999
CCUG	chr3:9991180-9991449(+)$1	269	3	7	11.9999
CCUG	chr22:50356468-50356689(+)$1	221	16	20	11.9999
CCUG	chr16:475951-476172(+)$1	221	160	164	11.9999
CCUG	chr11:6567492-6567734(+)$1	242	88	92	11.9999
CCUG	chr14:24909265-24909512(-)$1	247	46	50	11.9999

#otherMatches

#Struct PSSM
GGGG	chr20:34241104-34241320(-)$1	216	14	18	11.9999
dddd	chr16:2514456-2514696(+)$1	240	31	35	11.9999
eeee	chr19:45211133-45211386(-)$1	253	61	65	11.9999
lddd	chr9:139137424-139137635(-)$1	211	37	41	11.9999
hhhh	chr14:23770956-23771174(+)$1	218	110	114	11.9999
elll	chr19:39440661-39440866(-)$1	205	49	53	11.9999
DDDD	chr22:42334910-42335164(-)$1	254	53	57	11.9999
dd::	chr17:48545935-48546191(+)$1	256	249	253	11.9999
hh$$	chr5:453527-453835(+)$1	308	6	10	11.9999
uuuu	chr13:115009269-115009520(+)$1	251	88	92	11.9999
eeee	chrX:100666915-100667154(+)$1	239	116	120	11.9999
nnnn	chr10:13698546-13698809(+)$1	263	70	74	11.9999
LLGG	chr14:24884061-24884300(+)$1	239	7	11	11.9999
dddd	chr21:43166134-43166420(-)$1	286	12	16	11.9999
H:::	chr1:1242647-1242908(-)$1	261	65	69	11.9999
mmmc	chr2:32582190-32582445(+)$1	255	28	32	11.9999
::EE	chr19:39440774-39440991(-)$1	217	8	12	11.9999
ffff	chr7:96635263-96635546(-)$1	283	60	64	11.9999
ffff	chr15:65425727-65425983(-)$1	256	213	217	11.9999
eeee	chr17:57971044-57971293(+)$1	249	93	97	11.9999
22a]	chr1:1334368-1334654(-)$1	286	126	130	11.9999
KFFF	chr2:220099899-220100134(+)$1	235	57	61	11.9999
bbee	chr19:39440716-39440974(-)$1	258	59	63	11.9999
::EE	chr1:2121641-2121892(-)$1	251	30	34	11.9999
dddd	chr2:27448530-27448807(+)$1	277	11	15	11.9999
ddd]	chr4:22517180-22517449(-)$1	269	242	246	11.9999
ii[a	chr16:475972-476183(+)$1	211	139	143	11.9999
ffff	chr20:45353827-45354116(+)$1	289	6	10	11.9999
c]ee	chr8:145113354-145113607(-)$1	253	129	133	11.9999
cc]c	chr19:49002683-49002951(-)$1	268	62	66	11.9999
ccc]	chr22:38902121-38902348(-)$1	227	105	109	11.9999
:HHH	chr15:41812789-41813075(-)$1	286	0	4	11.9999
{EEE	chr16:475937-476151(+)$1	214	13	17	11.9999
elll	chr19:39440666-39440872(-)$1	206	55	59	11.9999
qqqq	chr2:242275399-242275625(+)$1	226	60	64	11.9999
{DDD	chr11:64039047-64039278(+)$1	231	10	14	11.9999
====	chr3:38159168-38159442(-)$1	274	25	29	11.9999
ddDD	chr17:74288391-74288635(-)$1	244	24	28	11.9999
cccp	chr7:72992532-72992817(-)$1	285	65	69	11.9999
gggg	chr11:64039015-64039247(+)$1	232	27	31	11.9999
hhhh	chr11:71935947-71936225(+)$1	278	15	19	11.9999
fff"	chr8:145689409-145689720(-)$1	311	84	88	11.9999
cccn	chr20:34241156-34241368(-)$1	212	17	21	11.9999
HH{B	chr1:43148822-43149060(+)$1	238	8	12	11.9999
EEE:	chr22:29446470-29446764(+)$1	294	31	35	11.9999
:::h	chr12:54577509-54577753(-)$1	244	43	47	11.9999
obb]	chr18:77894632-77894891(+)$1	259	11	15	11.9999
iiii	chr8:11566104-11566368(+)$1	264	64	68	11.9999
GGGG	chr16:31519349-31519644(-)$1	295	42	46	11.9999
gghh	chr16:2264600-2264868(-)$1	268	228	232	11.9999
ddde	chr15:65425419-65425706(-)$1	287	6	10	11.9999
2eee	chr15:45695132-45695380(+)$1	248	97	101	11.9999
iiii	chr17:4686070-4686323(+)$1	253	2	6	11.9999
hhhh	chr21:47612914-47613160(-)$1	246	129	133	11.9999
dddd	chr7:73009988-73010224(-)$1	236	111	115	11.9999
cccn	chr20:34241138-34241356(-)$1	218	5	9	11.9999
ff:D	chr11:64875936-64876205(+)$1	269	158	162	11.9999
hhhh	chr21:47612755-47612987(-)$1	232	73	77	11.9999
b!!c	chr19:39440611-39440827(-)$1	216	10	14	11.9999
ccc]	chr11:67166515-67166797(-)$1	282	34	38	11.9999
hhhh	chr2:32582272-32582525(+)$1	253	172	176	11.9999
dddd	chr7:99817617-99817873(-)$1	256	136	140	11.9999
dd%%	chr2:220042895-220043178(+)$1	283	107	111	11.9999
hhhh	chr2:32582245-32582472(+)$1	227	199	203	11.9999
333a	chr16:69364264-69364550(-)$1	286	229	233	11.9999
::::	chr22:20749605-20749899(+)$1	294	34	38	11.9999
fff:	chr12:110841251-110841525(-)$1	274	215	219	11.9999
33gg	chr6:43183941-43184214(+)$1	273	153	157	11.9999
DD{D	chr2:24149442-24149693(-)$1	251	41	45	11.9999
JJJJ	chr1:1334456-1334754(-)$1	298	30	34	11.9999
elll	chr19:39440635-39440861(-)$1	226	44	48	11.9999
hhhh	chr3:49742889-49743138(+)$1	249	7	11	11.9999
cccm	chr9:131196676-131196910(+)$1	234	37	41	11.9999
cccn	chr20:34241168-34241379(-)$1	211	28	32	11.9999
DDDE	chr2:219563714-219563959(+)$1	245	48	52	11.9999
bccc	chr19:12780982-12781271(-)$1	289	40	44	11.9999
E{CC	chr7:128864948-128865208(+)$1	260	11	15	11.9999
DD{C	chr9:139701014-139701313(-)$1	299	3	7	11.9999
eecc	chr4:22517267-22517496(-)$1	229	14	18	11.9999
EEEE	chr22:40742480-40742730(+)$1	250	8	12	11.9999
:eee	chr19:17338530-17338761(+)$1	231	110	114	11.9999
hhhh	chr17:39913739-39913987(-)$1	248	171	175	11.9999
clll	chr20:43019142-43019414(-)$1	272	94	98	11.9999
:::E	chr3:9991180-9991449(+)$1	269	3	7	11.9999
BB{B	chr22:50356468-50356689(+)$1	221	16	20	11.9999
hh[a	chr16:475951-476172(+)$1	221	160	164	11.9999
c!!e	chr11:6567492-6567734(+)$1	242	88	92	11.9999
""dd	chr14:24909265-24909512(-)$1	247	46	50	11.9999

#DB
((((	chr20:34241104-34241320(-)$1	1	14	18	11.9999
))))	chr16:2514456-2514696(+)$1	1	31	35	11.9999
((((	chr19:45211133-45211386(-)$1	1	61	65	11.9999
.)))	chr9:139137424-139137635(-)$1	1	37	41	11.9999
))))	chr14:23770956-23771174(+)$1	1	110	114	11.9999
(...	chr19:39440661-39440866(-)$1	1	49	53	11.9999
((((	chr22:42334910-42335164(-)$1	1	53	57	11.9999
))..	chr17:48545935-48546191(+)$1	1	249	253	11.9999
((..	chr5:453527-453835(+)$1	1	6	10	11.9999
....	chr13:115009269-115009520(+)$1	1	88	92	11.9999
))))	chrX:100666915-100667154(+)$1	1	116	120	11.9999
....	chr10:13698546-13698809(+)$1	1	70	74	11.9999
..((	chr14:24884061-24884300(+)$1	1	7	11	11.9999
((((	chr21:43166134-43166420(-)$1	1	12	16	11.9999
(...	chr1:1242647-1242908(-)$1	1	65	69	11.9999
...)	chr2:32582190-32582445(+)$1	1	28	32	11.9999
..((	chr19:39440774-39440991(-)$1	1	8	12	11.9999
))))	chr7:96635263-96635546(-)$1	1	60	64	11.9999
))))	chr15:65425727-65425983(-)$1	1	213	217	11.9999
))))	chr17:57971044-57971293(+)$1	1	93	97	11.9999
..).	chr1:1334368-1334654(-)$1	1	126	130	11.9999
.(((	chr2:220099899-220100134(+)$1	1	57	61	11.9999
))))	chr19:39440716-39440974(-)$1	1	59	63	11.9999
..((	chr1:2121641-2121892(-)$1	1	30	34	11.9999
))))	chr2:27448530-27448807(+)$1	1	11	15	11.9999
))).	chr4:22517180-22517449(-)$1	1	242	246	11.9999
((.(	chr16:475972-476183(+)$1	1	139	143	11.9999
((((	chr20:45353827-45354116(+)$1	1	6	10	11.9999
).))	chr8:145113354-145113607(-)$1	1	129	133	11.9999
)).)	chr19:49002683-49002951(-)$1	1	62	66	11.9999
))).	chr22:38902121-38902348(-)$1	1	105	109	11.9999
.(((	chr15:41812789-41813075(-)$1	1	0	4	11.9999
.(((	chr16:475937-476151(+)$1	1	13	17	11.9999
(...	chr19:39440666-39440872(-)$1	1	55	59	11.9999
....	chr2:242275399-242275625(+)$1	1	60	64	11.9999
.(((	chr11:64039047-64039278(+)$1	1	10	14	11.9999
))))	chr3:38159168-38159442(-)$1	1	25	29	11.9999
))((	chr17:74288391-74288635(-)$1	1	24	28	11.9999
(((.	chr7:72992532-72992817(-)$1	1	65	69	11.9999
((((	chr11:64039015-64039247(+)$1	1	27	31	11.9999
((((	chr11:71935947-71936225(+)$1	1	15	19	11.9999
(((.	chr8:145689409-145689720(-)$1	1	84	88	11.9999
(((.	chr20:34241156-34241368(-)$1	1	17	21	11.9999
((.(	chr1:43148822-43149060(+)$1	1	8	12	11.9999
(((.	chr22:29446470-29446764(+)$1	1	31	35	11.9999
...(	chr12:54577509-54577753(-)$1	1	43	47	11.9999
.)).	chr18:77894632-77894891(+)$1	1	11	15	11.9999
))))	chr8:11566104-11566368(+)$1	1	64	68	11.9999
((((	chr16:31519349-31519644(-)$1	1	42	46	11.9999
))))	chr16:2264600-2264868(-)$1	1	228	232	11.9999
((((	chr15:65425419-65425706(-)$1	1	6	10	11.9999
.)))	chr15:45695132-45695380(+)$1	1	97	101	11.9999
((((	chr17:4686070-4686323(+)$1	1	2	6	11.9999
))))	chr21:47612914-47613160(-)$1	1	129	133	11.9999
))))	chr7:73009988-73010224(-)$1	1	111	115	11.9999
(((.	chr20:34241138-34241356(-)$1	1	5	9	11.9999
)).)	chr11:64875936-64876205(+)$1	1	158	162	11.9999
((((	chr21:47612755-47612987(-)$1	1	73	77	11.9999
(..(	chr19:39440611-39440827(-)$1	1	10	14	11.9999
))).	chr11:67166515-67166797(-)$1	1	34	38	11.9999
))))	chr2:32582272-32582525(+)$1	1	172	176	11.9999
))))	chr7:99817617-99817873(-)$1	1	136	140	11.9999
((..	chr2:220042895-220043178(+)$1	1	107	111	11.9999
))))	chr2:32582245-32582472(+)$1	1	199	203	11.9999
...)	chr16:69364264-69364550(-)$1	1	229	233	11.9999
....	chr22:20749605-20749899(+)$1	1	34	38	11.9999
))).	chr12:110841251-110841525(-)$1	1	215	219	11.9999
..))	chr6:43183941-43184214(+)$1	1	153	157	11.9999
((.(	chr2:24149442-24149693(-)$1	1	41	45	11.9999
((((	chr1:1334456-1334754(-)$1	1	30	34	11.9999
(...	chr19:39440635-39440861(-)$1	1	44	48	11.9999
((((	chr3:49742889-49743138(+)$1	1	7	11	11.9999
(((.	chr9:131196676-131196910(+)$1	1	37	41	11.9999
(((.	chr20:34241168-34241379(-)$1	1	28	32	11.9999
((((	chr2:219563714-219563959(+)$1	1	48	52	11.9999
((((	chr19:12780982-12781271(-)$1	1	40	44	11.9999
(.((	chr7:128864948-128865208(+)$1	1	11	15	11.9999
((.(	chr9:139701014-139701313(-)$1	1	3	7	11.9999
((((	chr4:22517267-22517496(-)$1	1	14	18	11.9999
((((	chr22:40742480-40742730(+)$1	1	8	12	11.9999
.(((	chr19:17338530-17338761(+)$1	1	110	114	11.9999
))))	chr17:39913739-39913987(-)$1	1	171	175	11.9999
(...	chr20:43019142-43019414(-)$1	1	94	98	11.9999
...(	chr3:9991180-9991449(+)$1	1	3	7	11.9999
((.(	chr22:50356468-50356689(+)$1	1	16	20	11.9999
((.(	chr16:475951-476172(+)$1	1	160	164	11.9999
(..(	chr11:6567492-6567734(+)$1	1	88	92	11.9999
..((	chr14:24909265-24909512(-)$1	1	46	50	11.9999

#PSSM
C : 0.93	c : 0.06	
C : 0.93	c : 0.06	
U : 0.95	u : 0.04	
G : 0.94	g : 0.05	

#score	1055.9999999999998
#seq	88
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_transcript_m2_run2.nuc.txt

#NT
UUUC	chr14:21899105-21899362(-)$1	257	203	207	12.0000
UUUC	chrX:41091554-41091854(+)$1	300	2	6	12.0000
UUUC	chr15:64448010-64448239(-)$1	229	32	36	12.0000
UUUC	chr8:109240426-109240698(-)$1	272	30	34	12.0000
UUUC	chr12:111157863-111158116(-)$1	253	69	73	12.0000
UUUC	chr5:114951509-114951767(-)$1	258	184	188	12.0000
UUUC	chr12:57108287-57108525(-)$1	238	15	19	12.0000
UUUC	chr1:153923710-153924000(-)$1	290	224	228	12.0000
UUUC	chr22:51149638-51149901(+)$1	263	181	185	12.0000
UUUC	chr3:124684858-124685106(-)$1	248	25	29	12.0000
UUUC	chr10:102744884-102745133(+)$1	249	169	173	12.0000
UUUC	chr19:811625-811872(+)$1	247	30	34	12.0000
UUUC	chr8:128862213-128862509(+)$1	296	222	226	12.0000
UUUC	chr17:76967343-76967594(-)$1	251	141	145	12.0000
UUUC	chr21:16335617-16335848(-)$1	231	102	106	12.0000
UUUC	chr12:120649306-120649555(-)$1	249	88	92	12.0000
UUUC	chr2:178096307-178096562(-)$1	255	95	99	12.0000
UUUC	chr12:66357801-66358015(+)$1	214	27	31	12.0000
UUUC	chr12:50156820-50157048(+)$1	228	178	182	12.0000
UUUC	chr20:47651443-47651750(+)$1	307	288	292	12.0000
UUUC	chr5:36961563-36961786(+)$1	223	46	50	12.0000
UUUC	chr2:86731971-86732255(-)$1	284	38	42	12.0000
UUUC	chr22:31373688-31373960(+)$1	272	12	16	12.0000
UUUC	chr3:49571683-49571928(+)$1	245	36	40	12.0000
UUUC	chr10:28905077-28905350(+)$1	273	17	21	12.0000
uuuC	chr20:44689993-44690291(-)$1	298	2	6	12.0000
UUUC	chr12:57626870-57627095(+)$1	225	55	59	12.0000
UUUC	chr20:4680885-4681114(+)$1	229	148	152	12.0000
UUUC	chr5:55233031-55233277(-)$1	246	35	39	12.0000
UUUC	chr6:43128638-43128902(+)$1	264	130	134	12.0000
UUUC	chr3:23959251-23959469(+)$1	218	81	85	12.0000
UUUC	chr20:33345087-33345385(-)$1	298	2	6	12.0000
UUUC	chrX:53642661-53642897(-)$1	236	6	10	12.0000
uuuc	chr9:137231143-137231464(+)$1	321	308	312	12.0000
UUUC	chr8:22278604-22278827(+)$1	223	50	54	12.0000
UUUC	chr3:110917324-110917699(+)$1	375	86	90	12.0000
UUUC	chr1:202910332-202910560(-)$1	228	4	8	12.0000
UUUC	chr17:65103385-65103639(-)$1	254	5	9	12.0000
UUUC	chr7:139299113-139299339(-)$1	226	125	129	12.0000
UUUC	chr5:79438725-79438984(-)$1	259	27	31	12.0000
UUUC	chr16:72829169-72829409(-)$1	240	43	47	12.0000
UUUC	chr13:113976685-113976932(+)$1	247	93	97	12.0000
uuuc	chr12:53861491-53861716(+)$1	225	5	9	12.0000
UUUC	chr2:21230637-21230856(-)$1	219	64	68	12.0000
UUUC	chr8:109240398-109240626(-)$1	228	71	75	12.0000
UUUC	chr19:1257630-1257883(+)$1	253	41	45	12.0000
UUUC	chr6:155126462-155126721(+)$1	259	17	21	12.0000
UUUC	chr19:50000749-50000952(+)$1	203	11	15	12.0000
uuuc	chr11:68189198-68189460(+)$1	262	38	42	12.0000
uuUC	chr2:113891066-113891343(+)$1	277	70	74	12.0000
uuuc	chr20:8255774-8256072(+)$1	298	44	48	12.0000
UUUC	chr16:46964768-46965050(+)$1	282	5	9	12.0000
UUUC	chr16:52473594-52473906(-)$1	312	7	11	12.0000
UUUC	chr5:55233986-55234251(-)$1	265	150	154	12.0000
UUUC	chr12:7248626-7248974(-)$1	348	274	278	12.0000
UUUC	chr16:4013925-4014172(-)$1	247	13	17	12.0000
UUUC	chr12:124081771-124082023(+)$1	252	30	34	12.0000
UUUC	chr14:23240744-23240990(+)$1	246	155	159	12.0000
UUUC	chr6:33267741-33268004(-)$1	263	98	102	12.0000
UUUC	chr2:171853064-171853339(-)$1	275	214	218	12.0000
UUUC	chr8:11701829-11702051(-)$1	222	85	89	12.0000
UUUC	chr17:55554442-55554705(+)$1	263	214	218	12.0000
UUUC	chr14:69365430-69365733(-)$1	303	197	201	12.0000
UUUC	chr4:22404259-22404520(-)$1	261	20	24	12.0000
UUUC	chrM:6334-6576(+)$1	242	58	62	12.0000
UUUC	chr1:169510431-169510686(-)$1	255	23	27	12.0000
UUUC	chr3:30734576-30734829(+)$1	253	66	70	12.0000
UUUC	chr11:61734867-61735079(-)$1	212	4	8	12.0000
UUUC	chr3:100466895-100467202(+)$1	307	91	95	12.0000
UUUC	chr7:155537700-155538027(+)$1	327	197	201	12.0000
UUUC	chr6:52363395-52363632(-)$1	237	82	86	12.0000
UUUC	chr19:40739705-40739957(-)$1	252	23	27	12.0000
UUUC	chr17:5336333-5336561(-)$1	228	100	104	12.0000
UUUC	chr2:136402921-136403197(+)$1	276	3	7	12.0000
UUUC	chr16:69726972-69727226(+)$1	254	23	27	12.0000
UUUC	chr1:52227530-52227743(+)$1	213	129	133	12.0000
UUUC	chr1:169510282-169510571(-)$1	289	43	47	12.0000
UUUC	chr2:130925036-130925264(-)$1	228	83	87	12.0000
UUUC	chr8:128887067-128887332(+)$1	265	166	170	12.0000
UUUC	chr9:139099090-139099358(-)$1	268	10	14	12.0000

#otherMatches

#Struct PSSM
8888	chr10:7785008-7785216(+)$1	208	80	84	12.0000
CC~~	chr14:21899105-21899362(-)$1	257	203	207	12.0000
:::E	chrX:41091554-41091854(+)$1	300	2	6	12.0000
WWWW	chr15:64448010-64448239(-)$1	229	32	36	12.0000
::::	chr8:109240426-109240698(-)$1	272	30	34	12.0000
:DDD	chr12:111157863-111158116(-)$1	253	69	73	12.0000
%%cc	chr5:114951509-114951767(-)$1	258	184	188	12.0000
ggg[	chr12:57108287-57108525(-)$1	238	15	19	12.0000
::::	chr1:153923710-153924000(-)$1	290	224	228	12.0000
::::	chr22:51149638-51149901(+)$1	263	181	185	12.0000
2ccc	chr3:124684858-124685106(-)$1	248	25	29	12.0000
"===	chr10:102744884-102745133(+)$1	249	169	173	12.0000
EEEL	chr19:811625-811872(+)$1	247	30	34	12.0000
gggg	chr8:128862213-128862509(+)$1	296	222	226	12.0000
b[cc	chr17:76967343-76967594(-)$1	251	141	145	12.0000
pppp	chr21:16335617-16335848(-)$1	231	102	106	12.0000
::ee	chr12:120649306-120649555(-)$1	249	88	92	12.0000
H:::	chr2:178096307-178096562(-)$1	255	95	99	12.0000
mmmd	chr12:66357801-66358015(+)$1	214	27	31	12.0000
c]ff	chr12:50156820-50157048(+)$1	228	178	182	12.0000
:::E	chr20:47651443-47651750(+)$1	307	288	292	12.0000
c22a	chr5:36961563-36961786(+)$1	223	46	50	12.0000
pppp	chr2:86731971-86732255(-)$1	284	38	42	12.0000
wwww	chr22:31373688-31373960(+)$1	272	12	16	12.0000
oooa	chr3:49571683-49571928(+)$1	245	36	40	12.0000
JJJE	chr10:28905077-28905350(+)$1	273	17	21	12.0000
[iii	chr20:44689993-44690291(-)$1	298	2	6	12.0000
''''	chr12:57626870-57627095(+)$1	225	55	59	12.0000
FFFF	chr20:4680885-4681114(+)$1	229	148	152	12.0000
::::	chr5:55233031-55233277(-)$1	246	35	39	12.0000
EEcc	chr6:43128638-43128902(+)$1	264	130	134	12.0000
c]bb	chr3:23959251-23959469(+)$1	218	81	85	12.0000
FFFF	chr20:33345087-33345385(-)$1	298	2	6	12.0000
CC{A	chrX:53642661-53642897(-)$1	236	6	10	12.0000
~~~A	chr9:137231143-137231464(+)$1	321	308	312	12.0000
::::	chr8:22278604-22278827(+)$1	223	50	54	12.0000
FFFF	chr3:110917324-110917699(+)$1	375	86	90	12.0000
::::	chr1:202910332-202910560(-)$1	228	4	8	12.0000
:DDD	chr17:65103385-65103639(-)$1	254	5	9	12.0000
UUUU	chr7:139299113-139299339(-)$1	226	125	129	12.0000
++++	chr5:79438725-79438984(-)$1	259	27	31	12.0000
ffff	chr16:72829169-72829409(-)$1	240	43	47	12.0000
f444	chr13:113976685-113976932(+)$1	247	93	97	12.0000
::::	chr12:53861491-53861716(+)$1	225	5	9	12.0000
GGGG	chr2:21230637-21230856(-)$1	219	64	68	12.0000
::::	chr8:109240398-109240626(-)$1	228	71	75	12.0000
::::	chr19:1257630-1257883(+)$1	253	41	45	12.0000
bmmm	chr6:155126462-155126721(+)$1	259	17	21	12.0000
IIII	chr19:50000749-50000952(+)$1	203	11	15	12.0000
hhpp	chr11:68189198-68189460(+)$1	262	38	42	12.0000
ccc:	chr2:113891066-113891343(+)$1	277	70	74	12.0000
emmm	chr20:8255774-8256072(+)$1	298	44	48	12.0000
C:::	chr16:46964768-46965050(+)$1	282	5	9	12.0000
MMCC	chr16:52473594-52473906(-)$1	312	7	11	12.0000
dddd	chr5:55233986-55234251(-)$1	265	150	154	12.0000
[ccc	chr12:7248626-7248974(-)$1	348	274	278	12.0000
rrrr	chr16:4013925-4014172(-)$1	247	13	17	12.0000
oooo	chr12:124081771-124082023(+)$1	252	30	34	12.0000
d]bb	chr14:23240744-23240990(+)$1	246	155	159	12.0000
^^^^	chr6:33267741-33268004(-)$1	263	98	102	12.0000
c[dd	chr2:171853064-171853339(-)$1	275	214	218	12.0000
nfff	chr8:11701829-11702051(-)$1	222	85	89	12.0000
EEE:	chr17:55554442-55554705(+)$1	263	214	218	12.0000
JJJJ	chr14:69365430-69365733(-)$1	303	197	201	12.0000
JJJ:	chr4:22404259-22404520(-)$1	261	20	24	12.0000
^^^^	chrM:6334-6576(+)$1	242	58	62	12.0000
))))	chr1:169510431-169510686(-)$1	255	23	27	12.0000
eeee	chr3:30734576-30734829(+)$1	253	66	70	12.0000
e)))	chr11:61734867-61735079(-)$1	212	4	8	12.0000
pppp	chr3:100466895-100467202(+)$1	307	91	95	12.0000
9999	chr7:155537700-155538027(+)$1	327	197	201	12.0000
nndd	chr6:52363395-52363632(-)$1	237	82	86	12.0000
BLLL	chr19:40739705-40739957(-)$1	252	23	27	12.0000
:::e	chr17:5336333-5336561(-)$1	228	100	104	12.0000
::DD	chr2:136402921-136403197(+)$1	276	3	7	12.0000
:::d	chr16:69726972-69727226(+)$1	254	23	27	12.0000
hhhh	chr1:52227530-52227743(+)$1	213	129	133	12.0000
))))	chr1:169510282-169510571(-)$1	289	43	47	12.0000
"""c	chr2:130925036-130925264(-)$1	228	83	87	12.0000
ZZZC	chr8:128887067-128887332(+)$1	265	166	170	12.0000
c"""	chr9:139099090-139099358(-)$1	268	10	14	12.0000

#DB
....	chr10:7785008-7785216(+)$1	1	80	84	12.0000
))..	chr14:21899105-21899362(-)$1	1	203	207	12.0000
...(	chrX:41091554-41091854(+)$1	1	2	6	12.0000
....	chr15:64448010-64448239(-)$1	1	32	36	12.0000
....	chr8:109240426-109240698(-)$1	1	30	34	12.0000
.(((	chr12:111157863-111158116(-)$1	1	69	73	12.0000
..((	chr5:114951509-114951767(-)$1	1	184	188	12.0000
(((.	chr12:57108287-57108525(-)$1	1	15	19	12.0000
....	chr1:153923710-153924000(-)$1	1	224	228	12.0000
....	chr22:51149638-51149901(+)$1	1	181	185	12.0000
.)))	chr3:124684858-124685106(-)$1	1	25	29	12.0000
.(((	chr10:102744884-102745133(+)$1	1	169	173	12.0000
(((.	chr19:811625-811872(+)$1	1	30	34	12.0000
))))	chr8:128862213-128862509(+)$1	1	222	226	12.0000
(.((	chr17:76967343-76967594(-)$1	1	141	145	12.0000
....	chr21:16335617-16335848(-)$1	1	102	106	12.0000
..((	chr12:120649306-120649555(-)$1	1	88	92	12.0000
(...	chr2:178096307-178096562(-)$1	1	95	99	12.0000
...)	chr12:66357801-66358015(+)$1	1	27	31	12.0000
).))	chr12:50156820-50157048(+)$1	1	178	182	12.0000
...)	chr20:47651443-47651750(+)$1	1	288	292	12.0000
)..)	chr5:36961563-36961786(+)$1	1	46	50	12.0000
....	chr2:86731971-86732255(-)$1	1	38	42	12.0000
....	chr22:31373688-31373960(+)$1	1	12	16	12.0000
...)	chr3:49571683-49571928(+)$1	1	36	40	12.0000
((((	chr10:28905077-28905350(+)$1	1	17	21	12.0000
.(((	chr20:44689993-44690291(-)$1	1	2	6	12.0000
....	chr12:57626870-57627095(+)$1	1	55	59	12.0000
))))	chr20:4680885-4681114(+)$1	1	148	152	12.0000
....	chr5:55233031-55233277(-)$1	1	35	39	12.0000
((((	chr6:43128638-43128902(+)$1	1	130	134	12.0000
).))	chr3:23959251-23959469(+)$1	1	81	85	12.0000
((((	chr20:33345087-33345385(-)$1	1	2	6	12.0000
((.(	chrX:53642661-53642897(-)$1	1	6	10	12.0000
...)	chr9:137231143-137231464(+)$1	1	308	312	12.0000
....	chr8:22278604-22278827(+)$1	1	50	54	12.0000
((((	chr3:110917324-110917699(+)$1	1	86	90	12.0000
....	chr1:202910332-202910560(-)$1	1	4	8	12.0000
.(((	chr17:65103385-65103639(-)$1	1	5	9	12.0000
....	chr7:139299113-139299339(-)$1	1	125	129	12.0000
....	chr5:79438725-79438984(-)$1	1	27	31	12.0000
((((	chr16:72829169-72829409(-)$1	1	43	47	12.0000
)...	chr13:113976685-113976932(+)$1	1	93	97	12.0000
....	chr12:53861491-53861716(+)$1	1	5	9	12.0000
((((	chr2:21230637-21230856(-)$1	1	64	68	12.0000
....	chr8:109240398-109240626(-)$1	1	71	75	12.0000
....	chr19:1257630-1257883(+)$1	1	41	45	12.0000
(...	chr6:155126462-155126721(+)$1	1	17	21	12.0000
((((	chr19:50000749-50000952(+)$1	1	11	15	12.0000
((..	chr11:68189198-68189460(+)$1	1	38	42	12.0000
))).	chr2:113891066-113891343(+)$1	1	70	74	12.0000
(...	chr20:8255774-8256072(+)$1	1	44	48	12.0000
(...	chr16:46964768-46965050(+)$1	1	5	9	12.0000
..((	chr16:52473594-52473906(-)$1	1	7	11	12.0000
))))	chr5:55233986-55234251(-)$1	1	150	154	12.0000
.(((	chr12:7248626-7248974(-)$1	1	274	278	12.0000
....	chr16:4013925-4014172(-)$1	1	13	17	12.0000
....	chr12:124081771-124082023(+)$1	1	30	34	12.0000
).))	chr14:23240744-23240990(+)$1	1	155	159	12.0000
....	chr6:33267741-33268004(-)$1	1	98	102	12.0000
(.((	chr2:171853064-171853339(-)$1	1	214	218	12.0000
.)))	chr8:11701829-11702051(-)$1	1	85	89	12.0000
))).	chr17:55554442-55554705(+)$1	1	214	218	12.0000
))))	chr14:69365430-69365733(-)$1	1	197	201	12.0000
(((.	chr4:22404259-22404520(-)$1	1	20	24	12.0000
....	chrM:6334-6576(+)$1	1	58	62	12.0000
....	chr1:169510431-169510686(-)$1	1	23	27	12.0000
((((	chr3:30734576-30734829(+)$1	1	66	70	12.0000
(...	chr11:61734867-61735079(-)$1	1	4	8	12.0000
....	chr3:100466895-100467202(+)$1	1	91	95	12.0000
....	chr7:155537700-155538027(+)$1	1	197	201	12.0000
..))	chr6:52363395-52363632(-)$1	1	82	86	12.0000
(...	chr19:40739705-40739957(-)$1	1	23	27	12.0000
...(	chr17:5336333-5336561(-)$1	1	100	104	12.0000
..((	chr2:136402921-136403197(+)$1	1	3	7	12.0000
...(	chr16:69726972-69727226(+)$1	1	23	27	12.0000
((((	chr1:52227530-52227743(+)$1	1	129	133	12.0000
....	chr1:169510282-169510571(-)$1	1	43	47	12.0000
...(	chr2:130925036-130925264(-)$1	1	83	87	12.0000
...)	chr8:128887067-128887332(+)$1	1	166	170	12.0000
(...	chr9:139099090-139099358(-)$1	1	10	14	12.0000

#PSSM
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.93	u : 0.06	
C : 0.95	c : 0.04	

#score	972.0000000000006
#seq	81
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_transcript_m3_run2.nuc.txt

#NT
CUGGGCCUGGGG	chr19:54629915-54630175(+)$1	260	118	130	19.6111
CCAGGGCUGCGG	chr17:65362327-65362583(-)$1	256	216	228	17.3888
CCCGGGAUGGGG	chr4:83933763-83934025(-)$1	262	94	106	16.5555
ccggggccgcgg	chr22:43045127-43045386(-)$1	259	104	116	17.8518
CAGGGGUUGGGG	chr16:3117328-3117608(+)$1	280	112	124	19.7962
CUGGGACUGGGU	chr16:1500037-1500280(-)$1	243	214	226	15.8148
CAGGGGCCGAGG	chr17:79982457-79982707(+)$1	250	130	142	16.8333
CAGGGGCUGGCU	chr20:44521724-44521954(+)$1	230	131	143	16.4629
CAGGGGCUGCUG	chr3:52832017-52832259(+)$1	242	112	124	16.4629
cugaggcugagg	chr9:139292515-139292803(-)$1	288	184	196	15.8148
CGGGGGCUGAGG	chr2:11738933-11739172(+)$1	239	120	132	19.7037
CAGGGUCUGUGG	chr11:722261-722490(+)$1	229	93	105	16.0925
CCGCGGCUGGUG	chr7:72992559-72992865(-)$1	306	197	209	16.6481
CCAGGGCAGUGG	chr17:4902016-4902278(+)$1	262	209	221	13.8703
CCGGAGCUGCGG	chr17:38803753-38804081(-)$1	328	26	38	16.9259
GCGGGGCUGGGG	chr17:36878118-36878373(+)$1	255	186	198	21.4629
ccugggcuggag	chr1:11994890-11995145(+)$1	255	112	124	16.6481
ccggggcgggcg	chr9:35731856-35732133(-)$1	277	116	128	17.3888
ccggcgcagggg	chr5:177632251-177632539(+)$1	288	50	62	17.0185
CCGGGGGUGGGG	chr1:11866352-11866618(+)$1	266	117	129	20.8148
CACGGGGUGGGG	chr22:50657290-50657553(-)$1	263	69	81	15.9074
GCGCGGCCGGGG	chr10:94450031-94450374(+)$1	343	224	236	13.8703
CCGGGCCUGGCG	chr16:87869659-87869912(-)$1	253	124	136	17.2037
CGGGAGCUGAGG	chr4:1741272-1741524(+)$1	252	180	192	15.3518
GUGGGGCUGGGG	chr14:103396612-103396877(+)$1	265	75	87	20.3518
gggaggcugggg	chr17:7082232-7082478(-)$1	246	163	175	15.7222
CAGUGGCUGUGG	chr20:17610072-17610334(-)$1	262	216	228	15.8148
CCGCCGCUGGGG	chr16:15227460-15227741(-)$1	281	8	20	16.1851
AGGGGGCUGGGG	chr2:111435344-111435631(-)$1	287	117	129	19.7037
GCGGGGCUGGGG	chr9:130885750-130885991(-)$1	241	119	131	21.4629
CUGGGGUUGGGC	chr16:67693025-67693287(-)$1	262	16	28	15.6296
CCGGGUCUGGGU	chr14:103987299-103987595(-)$1	296	130	142	16.8333
GAGGGGGUGGGG	chr3:129307957-129308251(-)$1	294	81	93	16.6481
CCAGGGCUGGGG	chr17:77918516-77918781(-)$1	265	91	103	20.8148
CCGGGGCUGGGG	chr5:39073897-39074158(-)$1	261	1	13	24.7037
CUGGGACUGCGG	chr21:40720481-40720764(-)$1	283	216	228	16.1851
ccggggcugggg	chr22:20067810-20068142(+)$1	332	279	291	24.7037
CUGGGGCAGGGG	chr17:80021804-80022027(-)$1	223	54	66	20.2592
CAGGGGCUGGGG	chr19:7992662-7993016(-)$1	354	136	148	23.7777
AAGGGGCUGGAG	chr14:21548930-21549145(+)$1	215	16	28	16.3703
CUGGGGCUGGCA	chr16:2131875-2132132(+)$1	257	116	128	16.1851
CCGGGGCCGGGG	chr2:207024781-207025055(+)$1	274	46	58	21.2777
CUGGGGGUGGCG	chr8:87354874-87355164(+)$1	290	43	55	16.1851
AGGGUGCUGGGG	chr17:4788545-4788859(+)$1	314	100	112	15.2592
CCGGGGCUCGGU	chr18:10526288-10526557(+)$1	269	2	14	16.0925
CCGGGGCAGGGA	chr12:70132913-70133256(+)$1	343	240	252	17.4814
CUGGGGUUGGGG	chr6:43007660-43007949(-)$1	289	115	127	19.6111
UAGGGCCUGGGG	chr19:15226499-15226744(-)$1	245	110	122	15.9999
GUGGGGCAGGGG	chr17:80054859-80055129(-)$1	270	134	146	17.0185
CCCGGGCUGGGA	chr16:47007245-47007480(-)$1	235	192	204	16.8333
CAGGGGCAGGGC	chr9:131750194-131750463(+)$1	269	147	159	16.4629
CGGGGACCGGGG	chr17:73512916-73513196(+)$1	280	251	263	15.8148
cgggggcuggcg	chr6:168228116-168228400(+)$1	284	24	36	19.7037

#otherMatches

#Struct PSSM
{FFFFFFFFFFF	chr16:3076146-3076464(+)$1	318	40	52	16.3703
:EEEEEhhhhhh	chr19:54629915-54630175(+)$1	260	118	130	19.6111
h]ggggggg:::	chr17:65362327-65362583(-)$1	256	216	228	17.3888
hffffff[ammm	chr4:83933763-83934025(-)$1	262	94	106	16.5555
g[adddd####e	chr22:43045127-43045386(-)$1	259	104	116	17.8518
mffffff]eeee	chr16:3117328-3117608(+)$1	280	112	124	19.7962
DDDDYYA:::::	chr16:1500037-1500280(-)$1	243	214	226	15.8148
HHHHHHHH:::d	chr17:79982457-79982707(+)$1	250	130	142	16.8333
///GGGGGGG::	chr20:44521724-44521954(+)$1	230	131	143	16.4629
dddeeeee!!bb	chr3:52832017-52832259(+)$1	242	112	124	16.4629
ff333ccc4444	chr9:139292515-139292803(-)$1	288	184	196	15.8148
DCCCDDDD{EEE	chr2:11738933-11739172(+)$1	239	120	132	19.7037
GG:ffffff[dd	chr11:722261-722490(+)$1	229	93	105	16.0925
gbb]bb22ccc]	chr7:72992559-72992865(-)$1	306	197	209	16.6481
"""dddddddds	chr17:4902016-4902278(+)$1	262	209	221	13.8703
EEEEa[iiiiii	chr17:38803753-38804081(-)$1	328	26	38	16.9259
g]bbCCCYYEEE	chr17:36878118-36878373(+)$1	255	186	198	21.4629
LBB{EEEEEbb[	chr1:11994890-11995145(+)$1	255	112	124	16.6481
d]eeeee22bb]	chr9:35731856-35732133(-)$1	277	116	128	17.3888
cc[bboooooob	chr5:177632251-177632539(+)$1	288	50	62	17.0185
hhh"""eeeee[	chr1:11866352-11866618(+)$1	266	117	129	20.8148
A::eeeee"""e	chr22:50657290-50657553(-)$1	263	69	81	15.9074
hhhhhhccc[ee	chr10:94450031-94450374(+)$1	343	224	236	13.8703
BBffffffeeee	chr16:87869659-87869912(-)$1	253	124	136	17.2037
B}EEEEE}DDDD	chr4:1741272-1741524(+)$1	252	180	192	15.3518
eeeee[bbdddd	chr14:103396612-103396877(+)$1	265	75	87	20.3518
ppppahhhhhhh	chr17:7082232-7082478(-)$1	246	163	175	15.7222
hhhlllhhhhhh	chr20:17610072-17610334(-)$1	262	216	228	15.8148
C{CCCKKHHHHH	chr16:15227460-15227741(-)$1	281	8	20	16.1851
GGGG{HHHHHHH	chr2:111435344-111435631(-)$1	287	117	129	19.7037
dddd:ggggggg	chr9:130885750-130885991(-)$1	241	119	131	21.4629
{HHHHHHHHDDD	chr16:67693025-67693287(-)$1	262	16	28	15.6296
:ffffff[ffff	chr14:103987299-103987595(-)$1	296	130	142	16.8333
ccceeeee[ccc	chr3:129307957-129308251(-)$1	294	81	93	16.6481
="""ccc[ccc[	chr17:77918516-77918781(-)$1	265	91	103	20.8148
:GGGGGGG{CCC	chr5:39073897-39074158(-)$1	261	1	13	24.7037
mmmmddddbbii	chr21:40720481-40720764(-)$1	283	216	228	16.1851
"""eeeee[ddd	chr22:20067810-20068142(+)$1	332	279	291	24.7037
=======!!a[b	chr17:80021804-80022027(-)$1	223	54	66	20.2592
dddlllddddII	chr19:7992662-7993016(-)$1	354	136	148	23.7777
$$$ccc!!ffff	chr14:21548930-21549145(+)$1	215	16	28	16.3703
c]eeeee]dddd	chr16:2131875-2132132(+)$1	257	116	128	16.1851
DDDDGGGGGGGc	chr2:207024781-207025055(+)$1	274	46	58	21.2777
eeea[ammmma]	chr8:87354874-87355164(+)$1	290	43	55	16.1851
fffffdddd[cc	chr17:4788545-4788859(+)$1	314	100	112	15.2592
EEEE{GGGGGGG	chr18:10526288-10526557(+)$1	269	2	14	16.0925
CCEEEEEYYJJJ	chr12:70132913-70133256(+)$1	343	240	252	17.4814
cc]dddd]bbff	chr6:43007660-43007949(-)$1	289	115	127	19.6111
ffffCCC}IIII	chr19:15226499-15226744(-)$1	245	110	122	15.9999
a[dddd[ddddm	chr17:80054859-80055129(-)$1	270	134	146	17.0185
dd]a]eeeee::	chr16:47007245-47007480(-)$1	235	192	204	16.8333
gggggddddooo	chr9:131750194-131750463(+)$1	269	147	159	16.4629
eeellleeeee2	chr17:73512916-73513196(+)$1	280	251	263	15.8148
GGGGGG{CCCKK	chr6:168228116-168228400(+)$1	284	24	36	19.7037

#DB
.(((((((((((	chr16:3076146-3076464(+)$1	1	40	52	16.3703
.(((((((((((	chr19:54629915-54630175(+)$1	1	118	130	19.6111
).)))))))...	chr17:65362327-65362583(-)$1	1	216	228	17.3888
(((((((.(...	chr4:83933763-83934025(-)$1	1	94	106	16.5555
(.(((((....(	chr22:43045127-43045386(-)$1	1	104	116	17.8518
.)))))).))))	chr16:3117328-3117608(+)$1	1	112	124	19.7962
))))..).....	chr16:1500037-1500280(-)$1	1	214	226	15.8148
))))))))...(	chr17:79982457-79982707(+)$1	1	130	142	16.8333
...)))))))..	chr20:44521724-44521954(+)$1	1	131	143	16.4629
)))(((((..((	chr3:52832017-52832259(+)$1	1	112	124	16.4629
))...)))....	chr9:139292515-139292803(-)$1	1	184	196	15.8148
((((((((.(((	chr2:11738933-11739172(+)$1	1	120	132	19.7037
((.((((((.((	chr11:722261-722490(+)$1	1	93	105	16.0925
))).))..))).	chr7:72992559-72992865(-)$1	1	197	209	16.6481
...((((((((.	chr17:4902016-4902278(+)$1	1	209	221	13.8703
(((((.((((((	chr17:38803753-38804081(-)$1	1	26	38	16.9259
).)))))..)))	chr17:36878118-36878373(+)$1	1	186	198	21.4629
.((.(((((((.	chr1:11994890-11995145(+)$1	1	112	124	16.6481
).)))))..)).	chr9:35731856-35732133(-)$1	1	116	128	17.3888
((.((......)	chr5:177632251-177632539(+)$1	1	50	62	17.0185
(((...(((((.	chr1:11866352-11866618(+)$1	1	117	129	20.8148
(..(((((...(	chr22:50657290-50657553(-)$1	1	69	81	15.9074
(((((((((.((	chr10:94450031-94450374(+)$1	1	224	236	13.8703
((((((((((((	chr16:87869659-87869912(-)$1	1	124	136	17.2037
).))))).))))	chr4:1741272-1741524(+)$1	1	180	192	15.3518
(((((.((((((	chr14:103396612-103396877(+)$1	1	75	87	20.3518
....))))))))	chr17:7082232-7082478(-)$1	1	163	175	15.7222
(((...))))))	chr20:17610072-17610334(-)$1	1	216	228	15.8148
(.(((..(((((	chr16:15227460-15227741(-)$1	1	8	20	16.1851
((((.(((((((	chr2:111435344-111435631(-)$1	1	117	129	19.7037
)))).(((((((	chr9:130885750-130885991(-)$1	1	119	131	21.4629
.(((((((((((	chr16:67693025-67693287(-)$1	1	16	28	15.6296
.((((((.((((	chr14:103987299-103987595(-)$1	1	130	142	16.8333
((((((((.(((	chr3:129307957-129308251(-)$1	1	81	93	16.6481
(...(((.(((.	chr17:77918516-77918781(-)$1	1	91	103	20.8148
.(((((((.(((	chr5:39073897-39074158(-)$1	1	1	13	24.7037
....))))))))	chr21:40720481-40720764(-)$1	1	216	228	16.1851
...(((((.(((	chr22:20067810-20068142(+)$1	1	279	291	24.7037
(((((((..(.(	chr17:80021804-80022027(-)$1	1	54	66	20.2592
(((...))))))	chr19:7992662-7993016(-)$1	1	136	148	23.7777
...(((..((((	chr14:21548930-21549145(+)$1	1	16	28	16.3703
).))))).))))	chr16:2131875-2132132(+)$1	1	116	128	16.1851
((((((((((((	chr2:207024781-207025055(+)$1	1	46	58	21.2777
)))(.(....).	chr8:87354874-87355164(+)$1	1	43	55	16.1851
)))))((((.((	chr17:4788545-4788859(+)$1	1	100	112	15.2592
((((.(((((((	chr18:10526288-10526557(+)$1	1	2	14	16.0925
)))))))..)))	chr12:70132913-70133256(+)$1	1	240	252	17.4814
)).)))).))))	chr6:43007660-43007949(-)$1	1	115	127	19.6111
))))))).))))	chr19:15226499-15226744(-)$1	1	110	122	15.9999
(.((((.((((.	chr17:80054859-80055129(-)$1	1	134	146	17.0185
)).).)))))..	chr16:47007245-47007480(-)$1	1	192	204	16.8333
)))))((((...	chr9:131750194-131750463(+)$1	1	147	159	16.4629
(((...))))).	chr17:73512916-73513196(+)$1	1	251	263	15.8148
((((((.(((..	chr6:168228116-168228400(+)$1	1	24	36	19.7037

#PSSM
C : 0.64	c : 0.12	G : 0.11	A : 0.07	g : 0.01	U : 0.01	
C : 0.33	A : 0.24	U : 0.18	c : 0.09	G : 0.09	g : 0.03	u : 0.01	
G : 0.72	g : 0.12	A : 0.07	C : 0.05	u : 0.01	
G : 0.77	g : 0.11	C : 0.05	a : 0.03	U : 0.01	
G : 0.77	g : 0.12	A : 0.03	c : 0.01	C : 0.01	U : 0.01	
G : 0.70	g : 0.14	C : 0.05	A : 0.05	U : 0.03	
C : 0.70	c : 0.14	G : 0.07	U : 0.05	A : 0.01	
U : 0.68	u : 0.09	A : 0.09	C : 0.07	c : 0.01	g : 0.01	a : 0.01	
G : 0.83	g : 0.14	C : 0.01	
G : 0.66	g : 0.11	C : 0.07	A : 0.05	U : 0.05	c : 0.01	a : 0.01	
G : 0.72	g : 0.09	C : 0.07	U : 0.03	c : 0.03	a : 0.01	A : 0.01	
G : 0.68	g : 0.14	U : 0.07	A : 0.05	C : 0.03	

#score	956.9629629629625
#seq	54
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_CDS_m1_run2.nuc.txt

#NT
UUAUUUUU	chr10:103572527-103572747(-)$1	220	50	58	16.6851
UUAUUUUU	chr2:187367237-187367534(+)$1	297	220	228	16.6851
UGCUUUUU	chr1:33146019-33146245(+)$1	226	91	99	15.1111
uucuuuug	chr2:70129700-70129974(+)$1	274	71	79	15.6666
UUCUUUUU	chr11:6569132-6569401(+)$1	269	92	100	19.8333
UUCUUUCU	chr1:165621147-165621372(+)$1	225	48	56	16.2222
UUCUUUUU	chr15:42823608-42823845(+)$1	237	214	222	19.8333
UUCUUUUC	chr6:31828986-31829212(-)$1	226	87	95	15.6666
UUCCUUUU	chr5:134044439-134044686(+)$1	247	86	94	15.4814
UUCUUUAU	chr1:165623421-165623663(+)$1	242	137	145	15.8518
UUCUUUUU	chr3:31658412-31658658(+)$1	246	88	96	19.8333
UUCAUUUU	chr2:181927415-181927624(+)$1	209	22	30	15.8518
UUUUUUUU	chr12:102108247-102108474(+)$1	227	90	98	16.4074
UUAUUUUU	chr6:105733263-105733536(-)$1	273	92	100	16.6851
UUCUUUUU	chr7:135612369-135612644(-)$1	275	234	242	19.8333
UUCUCUUU	chr3:15079538-15079799(+)$1	261	91	99	15.0185
UUCAUUUU	chr9:108483734-108484011(+)$1	277	72	80	15.8518
uuuuuuuu	chr1:65775303-65775555(+)$1	252	27	35	16.4074
UUCUUGUU	chr5:137524540-137524839(-)$1	299	268	276	15.4814
UUCUUuua	chr8:124221551-124221798(+)$1	247	50	58	15.7592
UUAUUUUU	chrX:13336931-13337201(+)$1	270	39	47	16.6851
UCCUUUUU	chr22:18347484-18347746(-)$1	262	216	224	15.1111
UUCUUCUU	chr4:166261411-166261638(+)$1	227	61	69	15.4814
UUCUUUUC	chr5:38945626-38945883(-)$1	257	91	99	15.6666
UUCAUUUU	chr5:137497437-137497716(-)$1	279	0	8	15.8518
UUCUUUUG	chr3:176750641-176750906(-)$1	265	111	119	15.6666
UUUUUUUU	chr8:17863798-17864126(+)$1	328	157	165	16.4074
UUCUUUCU	chr2:85823702-85823961(+)$1	259	83	91	16.2222
UUAUUUUU	chr2:74383610-74383873(-)$1	263	80	88	16.6851
UUCUUuua	chr8:124221598-124221906(+)$1	308	3	11	15.7592
UUCUUAUU	chr21:47690225-47690454(-)$1	229	206	214	15.3888
UUCUUUCU	chr4:2513624-2513904(+)$1	280	22	30	16.2222
UUCUUUCU	chr19:49356973-49357239(-)$1	266	90	98	16.2222
UUCUUUCU	chrX:141291489-141291722(-)$1	233	107	115	16.2222
uucuuucu	chr2:70129371-70129699(+)$1	328	17	25	16.2222
UUCUUUUU	chr6:143486112-143486349(+)$1	237	90	98	19.8333
UUCUUUAU	chr18:12971141-12971404(+)$1	263	170	178	15.8518
UUGUUUUU	chr6:17856063-17856371(-)$1	308	7	15	16.2222
UUCAUUUU	chr3:150263387-150263606(-)$1	219	92	100	15.8518
UUGUUUUU	chr3:182603637-182603888(+)$1	251	4	12	16.2222
UUCUUUGU	chr12:112478104-112478407(-)$1	303	111	119	15.7592
UUAUUUUU	chr11:43964968-43965245(+)$1	277	88	96	16.6851
UUCUUUUU	chr11:34112100-34112324(+)$1	224	186	194	19.8333
UUCUUGUU	chr11:5364493-5364751(-)$1	258	81	89	15.4814
UUAUUUUU	chr6:42646278-42646507(+)$1	229	80	88	16.6851
UUCUUUUU	chr3:194140505-194140746(-)$1	241	191	199	19.8333
UUCAUUUU	chr18:33744411-33744703(+)$1	292	264	272	15.8518
UUCUUUUU	chr4:77957780-77958066(+)$1	286	104	112	19.8333
UUUUUUUU	chr14:54894397-54894660(-)$1	263	47	55	16.4074
UUCUUCUU	chr11:47774328-47774585(-)$1	257	38	46	15.4814
UUCUUUUU	chr14:92505922-92506165(-)$1	243	92	100	19.8333
AUCUUUUU	chr2:32530577-32530828(+)$1	251	70	78	15.1111
CUCUUUUU	chr15:85259154-85259361(-)$1	207	121	129	15.1111

#otherMatches

#Struct PSSM
EE::::::	chr2:223773499-223773769(+)$1	270	52	60	15.7592
::::::::	chr10:103572527-103572747(-)$1	220	50	58	16.6851
=======i	chr2:187367237-187367534(+)$1	297	220	228	16.6851
oooooeee	chr1:33146019-33146245(+)$1	226	91	99	15.1111
:::::::b	chr2:70129700-70129974(+)$1	274	71	79	15.6666
qqqqqqdd	chr11:6569132-6569401(+)$1	269	92	100	19.8333
JJJJJJJJ	chr1:165621147-165621372(+)$1	225	48	56	16.2222
ddd:::::	chr15:42823608-42823845(+)$1	237	214	222	19.8333
sssssssg	chr6:31828986-31829212(-)$1	226	87	95	15.6666
b$$$$$ee	chr5:134044439-134044686(+)$1	247	86	94	15.4814
ggg55555	chr1:165623421-165623663(+)$1	242	137	145	15.8518
RRRRFFFF	chr3:31658412-31658658(+)$1	246	88	96	19.8333
EEE:::::	chr2:181927415-181927624(+)$1	209	22	30	15.8518
:::::::f	chr12:102108247-102108474(+)$1	227	90	98	16.4074
oooooddd	chr6:105733263-105733536(-)$1	273	92	100	16.6851
FFFF||||	chr7:135612369-135612644(-)$1	275	234	242	19.8333
77777fff	chr3:15079538-15079799(+)$1	261	91	99	15.0185
ee::iiii	chr9:108483734-108484011(+)$1	277	72	80	15.8518
^^^^^^^^	chr1:65775303-65775555(+)$1	252	27	35	16.4074
HHHHHHYY	chr5:137524540-137524839(-)$1	299	268	276	15.4814
::::::::	chr8:124221551-124221798(+)$1	247	50	58	15.7592
HHHHHHH{	chrX:13336931-13337201(+)$1	270	39	47	16.6851
tttttttt	chr22:18347484-18347746(-)$1	262	216	224	15.1111
d[cccccc	chr4:166261411-166261638(+)$1	227	61	69	15.4814
:ffffff[	chr5:38945626-38945883(-)$1	257	91	99	15.6666
:DDDDNNN	chr5:137497437-137497716(-)$1	279	0	8	15.8518
HHHKKDDD	chr3:176750641-176750906(-)$1	265	111	119	15.6666
::::::::	chr8:17863798-17864126(+)$1	328	157	165	16.4074
ff%%%%%%	chr2:85823702-85823961(+)$1	259	83	91	16.2222
FFF{CCC:	chr2:74383610-74383873(-)$1	263	80	88	16.6851
::::::::	chr8:124221598-124221906(+)$1	308	3	11	15.7592
hhhh333c	chr21:47690225-47690454(-)$1	229	206	214	15.3888
EE::::::	chr4:2513624-2513904(+)$1	280	22	30	16.2222
fff:::dd	chr19:49356973-49357239(-)$1	266	90	98	16.2222
ffff22cc	chrX:141291489-141291722(-)$1	233	107	115	16.2222
::::::::	chr2:70129371-70129699(+)$1	328	17	25	16.2222
mmeeeee3	chr6:143486112-143486349(+)$1	237	90	98	19.8333
::::::::	chr18:12971141-12971404(+)$1	263	170	178	15.8518
dddnnnnn	chr6:17856063-17856371(-)$1	308	7	15	16.2222
#eeeee!!	chr3:150263387-150263606(-)$1	219	92	100	15.8518
::eeeee[	chr3:182603637-182603888(+)$1	251	4	12	16.2222
EEEEE{AK	chr12:112478104-112478407(-)$1	303	111	119	15.7592
cqqqqqqq	chr11:43964968-43965245(+)$1	277	88	96	16.6851
eqqqqqqq	chr11:34112100-34112324(+)$1	224	186	194	19.8333
:::::GGG	chr11:5364493-5364751(-)$1	258	81	89	15.4814
iiiiiitt	chr6:42646278-42646507(+)$1	229	80	88	16.6851
y=======	chr3:194140505-194140746(-)$1	241	191	199	19.8333
::::::::	chr18:33744411-33744703(+)$1	292	264	272	15.8518
HHHHHHHY	chr4:77957780-77958066(+)$1	286	104	112	19.8333
EE{HHHHH	chr14:54894397-54894660(-)$1	263	47	55	16.4074
ggggg:EE	chr11:47774328-47774585(-)$1	257	38	46	15.4814
^^^^^^^^	chr14:92505922-92506165(-)$1	243	92	100	19.8333
[ggggggg	chr2:32530577-32530828(+)$1	251	70	78	15.1111
^^^^^^^^	chr15:85259154-85259361(-)$1	207	121	129	15.1111

#DB
((......	chr2:223773499-223773769(+)$1	1	52	60	15.7592
........	chr10:103572527-103572747(-)$1	1	50	58	16.6851
)))))))(	chr2:187367237-187367534(+)$1	1	220	228	16.6851
.....)))	chr1:33146019-33146245(+)$1	1	91	99	15.1111
.......(	chr2:70129700-70129974(+)$1	1	71	79	15.6666
......))	chr11:6569132-6569401(+)$1	1	92	100	19.8333
((((((((	chr1:165621147-165621372(+)$1	1	48	56	16.2222
))).....	chr15:42823608-42823845(+)$1	1	214	222	19.8333
.......)	chr6:31828986-31829212(-)$1	1	87	95	15.6666
(.....((	chr5:134044439-134044686(+)$1	1	86	94	15.4814
))).....	chr1:165623421-165623663(+)$1	1	137	145	15.8518
....((((	chr3:31658412-31658658(+)$1	1	88	96	19.8333
(((.....	chr2:181927415-181927624(+)$1	1	22	30	15.8518
.......(	chr12:102108247-102108474(+)$1	1	90	98	16.4074
.....)))	chr6:105733263-105733536(-)$1	1	92	100	16.6851
))))....	chr7:135612369-135612644(-)$1	1	234	242	19.8333
.....)))	chr3:15079538-15079799(+)$1	1	91	99	15.0185
))..((((	chr9:108483734-108484011(+)$1	1	72	80	15.8518
........	chr1:65775303-65775555(+)$1	1	27	35	16.4074
))))))..	chr5:137524540-137524839(-)$1	1	268	276	15.4814
........	chr8:124221551-124221798(+)$1	1	50	58	15.7592
(((((((.	chrX:13336931-13337201(+)$1	1	39	47	16.6851
........	chr22:18347484-18347746(-)$1	1	216	224	15.1111
(.((((((	chr4:166261411-166261638(+)$1	1	61	69	15.4814
.((((((.	chr5:38945626-38945883(-)$1	1	91	99	15.6666
.((((...	chr5:137497437-137497716(-)$1	1	0	8	15.8518
(((..(((	chr3:176750641-176750906(-)$1	1	111	119	15.6666
........	chr8:17863798-17864126(+)$1	1	157	165	16.4074
((......	chr2:85823702-85823961(+)$1	1	83	91	16.2222
(((.(((.	chr2:74383610-74383873(-)$1	1	80	88	16.6851
........	chr8:124221598-124221906(+)$1	1	3	11	15.7592
))))...)	chr21:47690225-47690454(-)$1	1	206	214	15.3888
((......	chr4:2513624-2513904(+)$1	1	22	30	16.2222
)))...((	chr19:49356973-49357239(-)$1	1	90	98	16.2222
))))..))	chrX:141291489-141291722(-)$1	1	107	115	16.2222
........	chr2:70129371-70129699(+)$1	1	17	25	16.2222
..))))).	chr6:143486112-143486349(+)$1	1	90	98	19.8333
........	chr18:12971141-12971404(+)$1	1	170	178	15.8518
(((.....	chr6:17856063-17856371(-)$1	1	7	15	16.2222
.(((((..	chr3:150263387-150263606(-)$1	1	92	100	15.8518
..(((((.	chr3:182603637-182603888(+)$1	1	4	12	16.2222
(((((.(.	chr12:112478104-112478407(-)$1	1	111	119	15.7592
(.......	chr11:43964968-43965245(+)$1	1	88	96	16.6851
(.......	chr11:34112100-34112324(+)$1	1	186	194	19.8333
.....(((	chr11:5364493-5364751(-)$1	1	81	89	15.4814
((((((..	chr6:42646278-42646507(+)$1	1	80	88	16.6851
.)))))))	chr3:194140505-194140746(-)$1	1	191	199	19.8333
........	chr18:33744411-33744703(+)$1	1	264	272	15.8518
))))))).	chr4:77957780-77958066(+)$1	1	104	112	19.8333
((.(((((	chr14:54894397-54894660(-)$1	1	47	55	16.4074
))))).((	chr11:47774328-47774585(-)$1	1	38	46	15.4814
........	chr14:92505922-92506165(-)$1	1	92	100	19.8333
.(((((((	chr2:32530577-32530828(+)$1	1	70	78	15.1111
........	chr15:85259154-85259361(-)$1	1	121	129	15.1111

#PSSM
U : 0.90	u : 0.05	A : 0.01	C : 0.01	
U : 0.90	u : 0.05	G : 0.01	C : 0.01	
C : 0.72	A : 0.12	U : 0.05	c : 0.03	G : 0.03	u : 0.01	
U : 0.83	A : 0.09	u : 0.05	C : 0.01	
U : 0.92	u : 0.05	C : 0.01	
U : 0.81	u : 0.09	G : 0.03	C : 0.03	A : 0.01	
U : 0.75	C : 0.09	u : 0.07	A : 0.03	c : 0.01	G : 0.01	
U : 0.83	C : 0.03	u : 0.03	a : 0.03	A : 0.01	g : 0.01	G : 0.01	

#score	895.6296296296282
#seq	54
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_transcript_m2_run2.nuc.txt

#NT
ccca	chr22:50037924-50038203(-)$1	279	22	26	12.0000
CCCA	chr1:22165549-22165825(-)$1	276	26	30	12.0000
CCCA	chr6:33418587-33418862(+)$1	275	13	17	12.0000
CCCA	chr20:31131861-31132116(-)$1	255	21	25	12.0000
CCCA	chr5:151189700-151189996(+)$1	296	30	34	12.0000
CCCA	chr11:2711623-2711881(-)$1	258	80	84	12.0000
CCCA	chr2:159314092-159314378(+)$1	286	41	45	12.0000
CCCA	chr1:203791743-203792038(+)$1	295	237	241	12.0000
CCCA	chr19:41113639-41113923(+)$1	284	26	30	12.0000
CCCA	chr4:889082-889373(-)$1	291	149	153	12.0000
CCCA	chr19:1423919-1424242(+)$1	323	93	97	12.0000
CCCA	chr20:31151104-31151379(-)$1	275	43	47	12.0000
CCCA	chr1:54844262-54844603(-)$1	341	17	21	12.0000
CCCA	chr6:44120015-44120287(+)$1	272	33	37	12.0000
CCCA	chr8:22885188-22885475(-)$1	287	73	77	12.0000
CCCA	chr7:100172207-100172456(-)$1	249	56	60	12.0000
CCCA	chr19:36277586-36277865(+)$1	279	33	37	12.0000
CCCA	chr5:10712455-10712743(-)$1	288	0	4	12.0000
ccca	chr15:66880096-66880391(+)$1	295	157	161	12.0000
CCCA	chr22:50697475-50697779(-)$1	304	12	16	12.0000
CCCA	chr6:8087133-8087398(-)$1	265	29	33	12.0000
CCCA	chr16:81744350-81744652(+)$1	302	85	89	12.0000
CCCA	chrX:133930968-133931244(-)$1	276	44	48	12.0000
CCCA	chr7:98996620-98996885(-)$1	265	43	47	12.0000
CCCA	chr12:50492864-50493130(+)$1	266	104	108	12.0000
ccca	chr1:143173477-143173729(+)$1	252	21	25	12.0000
CCCA	chr16:81562441-81562736(+)$1	295	49	53	12.0000
CCCA	chr19:59080299-59080580(-)$1	281	42	46	12.0000
CCCA	chr5:10700433-10700722(-)$1	289	23	27	12.0000
CCCA	chr8:145682138-145682480(-)$1	342	29	33	12.0000
ccca	chr20:48711115-48711425(-)$1	310	117	121	12.0000
CCCA	chr1:228675702-228676017(+)$1	315	83	87	12.0000
CCCA	chr19:7970738-7971032(+)$1	294	80	84	12.0000
CCCA	chr9:136136114-136136406(-)$1	292	3	7	12.0000
ccca	chr3:195424615-195424921(+)$1	306	145	149	12.0000
CCCA	chr17:46701662-46701922(-)$1	260	18	22	12.0000
CCCA	chr20:44981013-44981320(-)$1	307	11	15	12.0000
CCCA	chr15:64448584-64448941(-)$1	357	77	81	12.0000
CCCA	chr3:47031886-47032163(+)$1	277	2	6	12.0000
ccca	chr22:20850676-20850940(+)$1	264	108	112	12.0000
CCCA	chr17:7751294-7751577(+)$1	283	27	31	12.0000
CCCA	chr9:134019822-134020115(+)$1	293	85	89	12.0000
CCCA	chr8:130558106-130558400(-)$1	294	110	114	12.0000
CCCA	chr22:20049764-20050050(+)$1	286	13	17	12.0000
ccca	chr5:10712578-10712860(-)$1	282	19	23	12.0000
ccca	chr19:8052835-8053091(-)$1	256	1	5	12.0000
CCCA	chr16:28846400-28846609(+)$1	209	7	11	12.0000
CCCA	chr12:57919246-57919527(+)$1	281	19	23	12.0000
CCCA	chrX:151142087-151142394(-)$1	307	5	9	12.0000
CCCA	chr7:5263266-5263553(+)$1	287	138	142	12.0000
CCCA	chr11:64019763-64020096(+)$1	333	4	8	12.0000
CCCA	chr4:887923-888208(-)$1	285	27	31	12.0000
ccCA	chr1:44370334-44370624(+)$1	290	83	87	12.0000
CCCA	chr7:127699048-127699386(+)$1	338	59	63	12.0000
CCCA	chr1:1255148-1255509(-)$1	361	103	107	12.0000
CCCA	chr19:38742411-38742748(-)$1	337	31	35	12.0000
ccca	chr19:15353743-15354021(-)$1	278	3	7	12.0000
CCCA	chr1:21502240-21502530(-)$1	290	49	53	12.0000
CCCA	chr16:89805901-89806247(-)$1	346	34	38	12.0000
CCCA	chr6:43588558-43588872(-)$1	314	21	25	12.0000
CCCA	chr22:23630501-23630793(+)$1	292	27	31	12.0000
CCCA	chr16:85629124-85629367(+)$1	243	122	126	12.0000
CCCA	chr19:54969985-54970244(+)$1	259	90	94	12.0000
CCCA	chr20:49127435-49127727(+)$1	292	44	48	12.0000
CCCA	chr3:6693246-6693650(+)$1	404	96	100	12.0000
ccca	chr1:8929832-8930109(-)$1	277	66	70	12.0000
CCCA	chr16:85664637-85664905(+)$1	268	234	238	12.0000
CCCA	chr1:8420900-8421142(-)$1	242	100	104	12.0000
CCCA	chr17:78282123-78282469(+)$1	346	19	23	12.0000
CCCA	chr22:50635934-50636327(+)$1	393	75	79	12.0000
CCCA	chr7:100286796-100287069(-)$1	273	12	16	12.0000
CCCA	chr22:19948858-19949155(+)$1	297	281	285	12.0000
CCCA	chr17:47090754-47091027(+)$1	273	50	54	12.0000
CCCA	chrX:131351259-131351567(-)$1	308	1	5	12.0000
ccca	chr19:15944487-15944771(+)$1	284	85	89	12.0000
CCCA	chrX:153596778-153597037(-)$1	259	9	13	12.0000
ccca	chr20:60895987-60896281(-)$1	294	28	32	12.0000
CCCA	chr1:228681680-228681980(+)$1	300	127	131	12.0000
CCCA	chr17:80036349-80036623(-)$1	274	12	16	12.0000
CCCA	chr21:47959375-47959702(+)$1	327	15	19	12.0000
Ccca	chr1:22213013-22213336(-)$1	323	41	45	12.0000
ccca	chr1:171526884-171527266(+)$1	382	3	7	12.0000
CCCA	chr1:220445078-220445347(-)$1	269	73	77	12.0000
ccca	chr14:99976926-99977191(+)$1	265	0	4	12.0000
ccca	chr12:25090871-25091143(-)$1	272	82	86	12.0000
CCCA	chr16:2811575-2811834(+)$1	259	33	37	12.0000
CCCA	chr21:39466432-39466687(-)$1	255	14	18	12.0000
CCCA	chr12:122618283-122618570(+)$1	287	50	54	12.0000
CCCA	chr16:67911678-67911964(+)$1	286	103	107	12.0000
ccca	chr21:47966379-47966772(+)$1	393	41	45	12.0000
CCCA	chr5:154137357-154137622(+)$1	265	193	197	12.0000
ccca	chr22:23557076-23557326(+)$1	250	53	57	12.0000
CCCA	chr19:5787087-5787356(-)$1	269	79	83	12.0000
CCCA	chr7:100064864-100065131(-)$1	267	14	18	12.0000

#otherMatches

#Struct PSSM
::CC	chr16:2057723-2057990(-)$1	267	36	40	12.0000
CCBB	chr22:50037924-50038203(-)$1	279	22	26	12.0000
:::G	chr1:22165549-22165825(-)$1	276	26	30	12.0000
ccll	chr6:33418587-33418862(+)$1	275	13	17	12.0000
^^^^	chr20:31131861-31132116(-)$1	255	21	25	12.0000
sssd	chr5:151189700-151189996(+)$1	296	30	34	12.0000
::::	chr11:2711623-2711881(-)$1	258	80	84	12.0000
ff""	chr2:159314092-159314378(+)$1	286	41	45	12.0000
qqqq	chr1:203791743-203792038(+)$1	295	237	241	12.0000
GGGK	chr19:41113639-41113923(+)$1	284	26	30	12.0000
eecc	chr4:889082-889373(-)$1	291	149	153	12.0000
$$gg	chr19:1423919-1424242(+)$1	323	93	97	12.0000
qqqq	chr20:31151104-31151379(-)$1	275	43	47	12.0000
ddbb	chr1:54844262-54844603(-)$1	341	17	21	12.0000
((((	chr6:44120015-44120287(+)$1	272	33	37	12.0000
FFFN	chr8:22885188-22885475(-)$1	287	73	77	12.0000
hhhh	chr7:100172207-100172456(-)$1	249	56	60	12.0000
8888	chr19:36277586-36277865(+)$1	279	33	37	12.0000
::::	chr5:10712455-10712743(-)$1	288	0	4	12.0000
:ccc	chr15:66880096-66880391(+)$1	295	157	161	12.0000
ddd"	chr22:50697475-50697779(-)$1	304	12	16	12.0000
hhhh	chr6:8087133-8087398(-)$1	265	29	33	12.0000
ffqq	chr16:81744350-81744652(+)$1	302	85	89	12.0000
dd!!	chrX:133930968-133931244(-)$1	276	44	48	12.0000
''''	chr7:98996620-98996885(-)$1	265	43	47	12.0000
333c	chr12:50492864-50493130(+)$1	266	104	108	12.0000
::::	chr1:143173477-143173729(+)$1	252	21	25	12.0000
^^^^	chr16:81562441-81562736(+)$1	295	49	53	12.0000
qqqq	chr19:59080299-59080580(-)$1	281	42	46	12.0000
gggg	chr5:10700433-10700722(-)$1	289	23	27	12.0000
:::=	chr8:145682138-145682480(-)$1	342	29	33	12.0000
"bb[	chr20:48711115-48711425(-)$1	310	117	121	12.0000
::::	chr1:228675702-228676017(+)$1	315	83	87	12.0000
22dd	chr19:7970738-7971032(+)$1	294	80	84	12.0000
::::	chr9:136136114-136136406(-)$1	292	3	7	12.0000
::::	chr3:195424615-195424921(+)$1	306	145	149	12.0000
cccs	chr17:46701662-46701922(-)$1	260	18	22	12.0000
ff""	chr20:44981013-44981320(-)$1	307	11	15	12.0000
ddd:	chr15:64448584-64448941(-)$1	357	77	81	12.0000
::::	chr3:47031886-47032163(+)$1	277	2	6	12.0000
::::	chr22:20850676-20850940(+)$1	264	108	112	12.0000
sscc	chr17:7751294-7751577(+)$1	283	27	31	12.0000
7777	chr9:134019822-134020115(+)$1	293	85	89	12.0000
>>>>	chr8:130558106-130558400(-)$1	294	110	114	12.0000
gggg	chr22:20049764-20050050(+)$1	286	13	17	12.0000
F::b	chr5:10712578-10712860(-)$1	282	19	23	12.0000
::CC	chr19:8052835-8053091(-)$1	256	1	5	12.0000
cc!!	chr16:28846400-28846609(+)$1	209	7	11	12.0000
:FFF	chr12:57919246-57919527(+)$1	281	19	23	12.0000
e###	chrX:151142087-151142394(-)$1	307	5	9	12.0000
::::	chr7:5263266-5263553(+)$1	287	138	142	12.0000
HHHH	chr11:64019763-64020096(+)$1	333	4	8	12.0000
b[dd	chr4:887923-888208(-)$1	285	27	31	12.0000
::::	chr1:44370334-44370624(+)$1	290	83	87	12.0000
^^^^	chr7:127699048-127699386(+)$1	338	59	63	12.0000
vvvv	chr1:1255148-1255509(-)$1	361	103	107	12.0000
eee]	chr19:38742411-38742748(-)$1	337	31	35	12.0000
::::	chr19:15353743-15354021(-)$1	278	3	7	12.0000
gggg	chr1:21502240-21502530(-)$1	290	49	53	12.0000
qqqq	chr16:89805901-89806247(-)$1	346	34	38	12.0000
DDEE	chr6:43588558-43588872(-)$1	314	21	25	12.0000
""cc	chr22:23630501-23630793(+)$1	292	27	31	12.0000
::::	chr16:85629124-85629367(+)$1	243	122	126	12.0000
pppp	chr19:54969985-54970244(+)$1	259	90	94	12.0000
ffJJ	chr20:49127435-49127727(+)$1	292	44	48	12.0000
::::	chr3:6693246-6693650(+)$1	404	96	100	12.0000
ssss	chr1:8929832-8930109(-)$1	277	66	70	12.0000
::ff	chr16:85664637-85664905(+)$1	268	234	238	12.0000
hhhh	chr1:8420900-8421142(-)$1	242	100	104	12.0000
NNFF	chr17:78282123-78282469(+)$1	346	19	23	12.0000
fbb$	chr22:50635934-50636327(+)$1	393	75	79	12.0000
LEEE	chr7:100286796-100287069(-)$1	273	12	16	12.0000
dddd	chr22:19948858-19949155(+)$1	297	281	285	12.0000
22a]	chr17:47090754-47091027(+)$1	273	50	54	12.0000
::::	chrX:131351259-131351567(-)$1	308	1	5	12.0000
ddd:	chr19:15944487-15944771(+)$1	284	85	89	12.0000
::::	chrX:153596778-153597037(-)$1	259	9	13	12.0000
d:::	chr20:60895987-60896281(-)$1	294	28	32	12.0000
^^^^	chr1:228681680-228681980(+)$1	300	127	131	12.0000
((dd	chr17:80036349-80036623(-)$1	274	12	16	12.0000
f"""	chr21:47959375-47959702(+)$1	327	15	19	12.0000
wwww	chr1:22213013-22213336(-)$1	323	41	45	12.0000
::::	chr1:171526884-171527266(+)$1	382	3	7	12.0000
::::	chr1:220445078-220445347(-)$1	269	73	77	12.0000
::::	chr14:99976926-99977191(+)$1	265	0	4	12.0000
:::D	chr12:25090871-25091143(-)$1	272	82	86	12.0000
eedd	chr16:2811575-2811834(+)$1	259	33	37	12.0000
::::	chr21:39466432-39466687(-)$1	255	14	18	12.0000
qqqe	chr12:122618283-122618570(+)$1	287	50	54	12.0000
>>>>	chr16:67911678-67911964(+)$1	286	103	107	12.0000
FLLL	chr21:47966379-47966772(+)$1	393	41	45	12.0000
zzzz	chr5:154137357-154137622(+)$1	265	193	197	12.0000
nnnc	chr22:23557076-23557326(+)$1	250	53	57	12.0000
::::	chr19:5787087-5787356(-)$1	269	79	83	12.0000
FFFF	chr7:100064864-100065131(-)$1	267	14	18	12.0000

#DB
..((	chr16:2057723-2057990(-)$1	1	36	40	12.0000
((((	chr22:50037924-50038203(-)$1	1	22	26	12.0000
...(	chr1:22165549-22165825(-)$1	1	26	30	12.0000
((..	chr6:33418587-33418862(+)$1	1	13	17	12.0000
....	chr20:31131861-31132116(-)$1	1	21	25	12.0000
...)	chr5:151189700-151189996(+)$1	1	30	34	12.0000
....	chr11:2711623-2711881(-)$1	1	80	84	12.0000
((..	chr2:159314092-159314378(+)$1	1	41	45	12.0000
....	chr1:203791743-203792038(+)$1	1	237	241	12.0000
(((.	chr19:41113639-41113923(+)$1	1	26	30	12.0000
))))	chr4:889082-889373(-)$1	1	149	153	12.0000
..((	chr19:1423919-1424242(+)$1	1	93	97	12.0000
....	chr20:31151104-31151379(-)$1	1	43	47	12.0000
))((	chr1:54844262-54844603(-)$1	1	17	21	12.0000
....	chr6:44120015-44120287(+)$1	1	33	37	12.0000
(((.	chr8:22885188-22885475(-)$1	1	73	77	12.0000
((((	chr7:100172207-100172456(-)$1	1	56	60	12.0000
....	chr19:36277586-36277865(+)$1	1	33	37	12.0000
....	chr5:10712455-10712743(-)$1	1	0	4	12.0000
.(((	chr15:66880096-66880391(+)$1	1	157	161	12.0000
(((.	chr22:50697475-50697779(-)$1	1	12	16	12.0000
))))	chr6:8087133-8087398(-)$1	1	29	33	12.0000
((..	chr16:81744350-81744652(+)$1	1	85	89	12.0000
((..	chrX:133930968-133931244(-)$1	1	44	48	12.0000
....	chr7:98996620-98996885(-)$1	1	43	47	12.0000
...)	chr12:50492864-50493130(+)$1	1	104	108	12.0000
....	chr1:143173477-143173729(+)$1	1	21	25	12.0000
....	chr16:81562441-81562736(+)$1	1	49	53	12.0000
....	chr19:59080299-59080580(-)$1	1	42	46	12.0000
((((	chr5:10700433-10700722(-)$1	1	23	27	12.0000
...(	chr8:145682138-145682480(-)$1	1	29	33	12.0000
.((.	chr20:48711115-48711425(-)$1	1	117	121	12.0000
....	chr1:228675702-228676017(+)$1	1	83	87	12.0000
..))	chr19:7970738-7971032(+)$1	1	80	84	12.0000
....	chr9:136136114-136136406(-)$1	1	3	7	12.0000
....	chr3:195424615-195424921(+)$1	1	145	149	12.0000
(((.	chr17:46701662-46701922(-)$1	1	18	22	12.0000
((..	chr20:44981013-44981320(-)$1	1	11	15	12.0000
))).	chr15:64448584-64448941(-)$1	1	77	81	12.0000
....	chr3:47031886-47032163(+)$1	1	2	6	12.0000
....	chr22:20850676-20850940(+)$1	1	108	112	12.0000
..))	chr17:7751294-7751577(+)$1	1	27	31	12.0000
....	chr9:134019822-134020115(+)$1	1	85	89	12.0000
....	chr8:130558106-130558400(-)$1	1	110	114	12.0000
((((	chr22:20049764-20050050(+)$1	1	13	17	12.0000
(..(	chr5:10712578-10712860(-)$1	1	19	23	12.0000
..((	chr19:8052835-8053091(-)$1	1	1	5	12.0000
((..	chr16:28846400-28846609(+)$1	1	7	11	12.0000
.(((	chr12:57919246-57919527(+)$1	1	19	23	12.0000
(...	chrX:151142087-151142394(-)$1	1	5	9	12.0000
....	chr7:5263266-5263553(+)$1	1	138	142	12.0000
((((	chr11:64019763-64020096(+)$1	1	4	8	12.0000
(.((	chr4:887923-888208(-)$1	1	27	31	12.0000
....	chr1:44370334-44370624(+)$1	1	83	87	12.0000
....	chr7:127699048-127699386(+)$1	1	59	63	12.0000
....	chr1:1255148-1255509(-)$1	1	103	107	12.0000
))).	chr19:38742411-38742748(-)$1	1	31	35	12.0000
....	chr19:15353743-15354021(-)$1	1	3	7	12.0000
))))	chr1:21502240-21502530(-)$1	1	49	53	12.0000
....	chr16:89805901-89806247(-)$1	1	34	38	12.0000
((((	chr6:43588558-43588872(-)$1	1	21	25	12.0000
..((	chr22:23630501-23630793(+)$1	1	27	31	12.0000
....	chr16:85629124-85629367(+)$1	1	122	126	12.0000
....	chr19:54969985-54970244(+)$1	1	90	94	12.0000
))((	chr20:49127435-49127727(+)$1	1	44	48	12.0000
....	chr3:6693246-6693650(+)$1	1	96	100	12.0000
....	chr1:8929832-8930109(-)$1	1	66	70	12.0000
..((	chr16:85664637-85664905(+)$1	1	234	238	12.0000
((((	chr1:8420900-8421142(-)$1	1	100	104	12.0000
..((	chr17:78282123-78282469(+)$1	1	19	23	12.0000
(((.	chr22:50635934-50636327(+)$1	1	75	79	12.0000
.(((	chr7:100286796-100287069(-)$1	1	12	16	12.0000
))))	chr22:19948858-19949155(+)$1	1	281	285	12.0000
..).	chr17:47090754-47091027(+)$1	1	50	54	12.0000
....	chrX:131351259-131351567(-)$1	1	1	5	12.0000
))).	chr19:15944487-15944771(+)$1	1	85	89	12.0000
....	chrX:153596778-153597037(-)$1	1	9	13	12.0000
)...	chr20:60895987-60896281(-)$1	1	28	32	12.0000
....	chr1:228681680-228681980(+)$1	1	127	131	12.0000
..((	chr17:80036349-80036623(-)$1	1	12	16	12.0000
(...	chr21:47959375-47959702(+)$1	1	15	19	12.0000
....	chr1:22213013-22213336(-)$1	1	41	45	12.0000
....	chr1:171526884-171527266(+)$1	1	3	7	12.0000
....	chr1:220445078-220445347(-)$1	1	73	77	12.0000
....	chr14:99976926-99977191(+)$1	1	0	4	12.0000
...)	chr12:25090871-25091143(-)$1	1	82	86	12.0000
((((	chr16:2811575-2811834(+)$1	1	33	37	12.0000
....	chr21:39466432-39466687(-)$1	1	14	18	12.0000
...)	chr12:122618283-122618570(+)$1	1	50	54	12.0000
....	chr16:67911678-67911964(+)$1	1	103	107	12.0000
(...	chr21:47966379-47966772(+)$1	1	41	45	12.0000
....	chr5:154137357-154137622(+)$1	1	193	197	12.0000
...)	chr22:23557076-23557326(+)$1	1	53	57	12.0000
....	chr19:5787087-5787356(-)$1	1	79	83	12.0000
((((	chr7:100064864-100065131(-)$1	1	14	18	12.0000

#PSSM
C : 0.81	c : 0.18	
C : 0.80	c : 0.20	
C : 0.81	c : 0.18	
A : 0.81	a : 0.18	

#score	1140.0000000000002
#seq	95
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_UTR_m1_run2.nuc.txt

#NT
GGGGGAGGG	chr17:7477028-7477309(+)$1	281	100	109	20.6842
UGGGGAGGG	chr5:73924808-73925103(-)$1	295	94	103	16.0789
GGGGGAGGG	chr9:110046150-110046532(+)$1	382	186	195	20.6842
GUGGGAGGC	chr3:49050497-49050788(+)$1	291	57	66	14.4999
GGGGGAAGA	chr16:68331309-68331656(+)$1	347	128	137	13.7105
GGGGGAGAG	chr3:113464486-113464775(-)$1	289	49	58	17.7894
GGGGGCGGU	chr3:49045518-49045768(+)$1	250	44	53	14.3684
GGGGGAGAA	chr12:30907133-30907456(-)$1	323	140	149	15.4210
GUGGGAGGG	chr15:72521844-72522138(-)$1	294	136	145	16.9999
GGAGGAGGA	chr14:32546526-32546800(+)$1	274	7	16	13.8421
GGGGGAGAG	chr1:26147380-26147680(+)$1	300	160	169	17.7894
GAGGGAGGG	chr16:2580590-2580881(+)$1	291	168	177	16.8684
GGGGGUGCG	chr12:8025158-8025442(-)$1	284	69	78	13.7105
GGGGGUGGG	chr3:11599724-11600042(-)$1	318	97	106	16.9999
GAGGGAGGG	chr11:66394121-66394379(+)$1	258	45	54	16.8684
GGGGGCGGG	chr6:117996584-117996877(+)$1	293	55	64	17.1315
gGCGGAGGA	chr17:41622526-41622805(+)$1	279	76	85	13.8421
GGGUGAGGG	chr14:20923410-20923668(+)$1	258	175	184	15.9473
GGGGGAGGU	chr10:74035261-74035511(+)$1	250	86	95	17.9210
GGGGGCGGG	chr8:144678726-144678991(-)$1	265	31	40	17.1315
GGGGUAGGG	chr20:62565176-62565444(+)$1	268	126	135	15.9473
GCGGGAGGG	chr8:12611484-12611752(-)$1	268	71	80	16.8684
GCGGGAGCG	chr19:2270253-2270568(+)$1	315	69	78	13.5789
GGGGGAGUC	chr8:71314210-71314465(-)$1	255	147	156	15.1578
CGGGGAGGG	chr16:2581146-2581444(+)$1	298	72	81	16.0789
GGGGGAGGC	chr2:131808664-131808926(-)$1	262	156	165	18.1842
GUGGGAGUG	chr22:41755305-41755580(+)$1	275	261	270	13.9736
GGGGGAGGU	chr14:105259208-105259485(-)$1	277	75	84	17.9210
gggggagga	chr2:20550290-20550540(-)$1	250	18	27	18.3157
GGUGGAGGG	chr20:60710053-60710329(+)$1	276	90	99	16.2105
GGGGGAGGG	chr8:134308518-134308847(-)$1	329	122	131	20.6842
GGGGGAGUC	chr21:34942094-34942381(+)$1	287	209	218	15.1578
GGGGGAGGC	chr19:50168041-50168352(-)$1	311	207	216	18.1842
GGGGGCGUG	chr2:20549869-20550113(-)$1	244	18	27	14.1052
GGGGGUGGA	chr14:104163934-104164200(+)$1	266	87	96	14.6315
GGGGGAGGG	chr16:2821104-2821355(+)$1	251	10	19	20.6842
GGGGGACAG	chr16:2579729-2579975(+)$1	246	132	141	13.1842

#otherMatches

#Struct PSSM
eeeee]bb:	chr9:127020423-127020706(+)$1	283	63	72	17.7894
b]ffffff]	chr17:7477028-7477309(+)$1	281	100	109	20.6842
GGGGGGG::	chr5:73924808-73925103(-)$1	295	94	103	16.0789
dddd[bbbb	chr9:110046150-110046532(+)$1	382	186	195	20.6842
f]ddddddd	chr3:49050497-49050788(+)$1	291	57	66	14.4999
eeeeeiiii	chr16:68331309-68331656(+)$1	347	128	137	13.7105
FFFF{CCCc	chr3:113464486-113464775(-)$1	289	49	58	17.7894
fffffa"""	chr3:49045518-49045768(+)$1	250	44	53	14.3684
nneeeee::	chr12:30907133-30907456(-)$1	323	140	149	15.4210
[arrrrrrr	chr15:72521844-72522138(-)$1	294	136	145	16.9999
E:FFFFFF:	chr14:32546526-32546800(+)$1	274	7	16	13.8421
A{DDDDeee	chr1:26147380-26147680(+)$1	300	160	169	17.7894
mma]dddd]	chr16:2580590-2580881(+)$1	291	168	177	16.8684
eeegggggg	chr12:8025158-8025442(-)$1	284	69	78	13.7105
CCBB{JJJJ	chr3:11599724-11600042(-)$1	318	97	106	16.9999
b!!ffffff	chr11:66394121-66394379(+)$1	258	45	54	16.8684
cmmmmccc:	chr6:117996584-117996877(+)$1	293	55	64	17.1315
cc[eeeee!	chr17:41622526-41622805(+)$1	279	76	85	13.8421
g[bb[a[ee	chr14:20923410-20923668(+)$1	258	175	184	15.9473
EEEE}BB}D	chr10:74035261-74035511(+)$1	250	86	95	17.9210
II::ddddn	chr8:144678726-144678991(-)$1	265	31	40	17.1315
FFFFF:DDD	chr20:62565176-62565444(+)$1	268	126	135	15.9473
oooooobbc	chr8:12611484-12611752(-)$1	268	71	80	16.8684
ddmmmmddd	chr19:2270253-2270568(+)$1	315	69	78	13.5789
hhh[bb[bb	chr8:71314210-71314465(-)$1	255	147	156	15.1578
========b	chr16:2581146-2581444(+)$1	298	72	81	16.0789
#hhhhhhhh	chr2:131808664-131808926(-)$1	262	156	165	18.1842
]dddd]ccc	chr22:41755305-41755580(+)$1	275	261	270	13.9736
ooooooccc	chr14:105259208-105259485(-)$1	277	75	84	17.9210
FFFFKKJJJ	chr2:20550290-20550540(-)$1	250	18	27	18.3157
cc:ffffff	chr20:60710053-60710329(+)$1	276	90	99	16.2105
22ddddGGG	chr8:134308518-134308847(-)$1	329	122	131	20.6842
eeee]dddd	chr21:34942094-34942381(+)$1	287	209	218	15.1578
GBB:::bbf	chr19:50168041-50168352(-)$1	311	207	216	18.1842
f]bbeeeee	chr2:20549869-20550113(-)$1	244	18	27	14.1052
f[accc$$$	chr14:104163934-104164200(+)$1	266	87	96	14.6315
HHHHHEEEE	chr16:2821104-2821355(+)$1	251	10	19	20.6842
dddd22hhh	chr16:2579729-2579975(+)$1	246	132	141	13.1842

#DB
))))).)).	chr9:127020423-127020706(+)$1	1	63	72	17.7894
).)))))).	chr17:7477028-7477309(+)$1	1	100	109	20.6842
(((((((..	chr5:73924808-73925103(-)$1	1	94	103	16.0789
((((.((((	chr9:110046150-110046532(+)$1	1	186	195	20.6842
).)))))))	chr3:49050497-49050788(+)$1	1	57	66	14.4999
(((((((((	chr16:68331309-68331656(+)$1	1	128	137	13.7105
((((.((((	chr3:113464486-113464775(-)$1	1	49	58	17.7894
((((((...	chr3:49045518-49045768(+)$1	1	44	53	14.3684
..)))))..	chr12:30907133-30907456(-)$1	1	140	149	15.4210
.(.......	chr15:72521844-72522138(-)$1	1	136	145	16.9999
(.((((((.	chr14:32546526-32546800(+)$1	1	7	16	13.8421
(.(((((((	chr1:26147380-26147680(+)$1	1	160	169	17.7894
..).)))).	chr16:2580590-2580881(+)$1	1	168	177	16.8684
)))))))))	chr12:8025158-8025442(-)$1	1	69	78	13.7105
((((.((((	chr3:11599724-11600042(-)$1	1	97	106	16.9999
(..((((((	chr11:66394121-66394379(+)$1	1	45	54	16.8684
(....))).	chr6:117996584-117996877(+)$1	1	55	64	17.1315
((.(((((.	chr17:41622526-41622805(+)$1	1	76	85	13.8421
(.((.(.((	chr14:20923410-20923668(+)$1	1	175	184	15.9473
)))).)).)	chr10:74035261-74035511(+)$1	1	86	95	17.9210
((..((((.	chr8:144678726-144678991(-)$1	1	31	40	17.1315
))))).(((	chr20:62565176-62565444(+)$1	1	126	135	15.9473
......))(	chr8:12611484-12611752(-)$1	1	71	80	16.8684
((....)))	chr19:2270253-2270568(+)$1	1	69	78	13.5789
(((.((.((	chr8:71314210-71314465(-)$1	1	147	156	15.1578
)))))))))	chr16:2581146-2581444(+)$1	1	72	81	16.0789
.((((((((	chr2:131808664-131808926(-)$1	1	156	165	18.1842
.)))).)))	chr22:41755305-41755580(+)$1	1	261	270	13.9736
......)))	chr14:105259208-105259485(-)$1	1	75	84	17.9210
((((..(((	chr2:20550290-20550540(-)$1	1	18	27	18.3157
)).((((((	chr20:60710053-60710329(+)$1	1	90	99	16.2105
..)))))))	chr8:134308518-134308847(-)$1	1	122	131	20.6842
)))).))))	chr21:34942094-34942381(+)$1	1	209	218	15.1578
(((...(((	chr19:50168041-50168352(-)$1	1	207	216	18.1842
).))(((((	chr2:20549869-20550113(-)$1	1	18	27	14.1052
(.((((...	chr14:104163934-104164200(+)$1	1	87	96	14.6315
(((((((((	chr16:2821104-2821355(+)$1	1	10	19	20.6842
))))..)))	chr16:2579729-2579975(+)$1	1	132	141	13.1842

#PSSM
G : 0.89	g : 0.05	U : 0.02	C : 0.02	
G : 0.78	U : 0.07	A : 0.05	C : 0.05	g : 0.02	
G : 0.86	g : 0.05	A : 0.02	C : 0.02	U : 0.02	
G : 0.92	g : 0.05	U : 0.02	
G : 0.92	g : 0.05	U : 0.02	
A : 0.76	C : 0.10	U : 0.07	a : 0.05	
G : 0.89	g : 0.05	A : 0.02	C : 0.02	
G : 0.68	A : 0.10	U : 0.10	C : 0.05	a : 0.02	g : 0.02	
G : 0.60	C : 0.13	A : 0.13	U : 0.07	g : 0.02	a : 0.02	

#score	624.9473684210516
#seq	38
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_transcript_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
eeennnnneeeee::::GGGGGGG{BBKKCCCMMMMFFFFFF{ANNNNNDDDD{CCC::BB{CCC{HHHHHHHHNNNNNDDDD:::a[ddddllldddd]a::gggggggbboooooobb22ggggggg:::::::DDDD?????HHHHHHHH}CCC}BBbb[gggggggooooooggggggg]bbCCC}DDDD}A}FFFFFFZZZCCCBB}GGGGGGG:::CCC{FFFFFFLLLFFFFFF:::ddddlllddddcccmmmmccc:FFFFFF}FFFFFF}CCCiiiiiiiii$$$$$fffffflllffffff22ii	chr1:6393264-6393688(-)$1	424	33	349	948.0000

#DB
(((.....)))))....(((((((.((..(((....((((((.(.....((((.(((..((.(((.((((((((.....((((...(.((((...)))).)..(((((((((......))..))))))).......)))).....)))))))).))).))((.(((((((......))))))).))))).)))).).))))))...))))).)))))))...(((.((((((...((((((...((((...))))(((....))).)))))).)))))).)))(((((((((.....((((((...))))))..))	chr1:6393264-6393688(-)$1	1	33	349	948.0000

#PSSM
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	

#score	948.0
#seq	1
#width	316
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_UTR_m1_run2.nuc.txt

#NT
CAGG	chr19:10801475-10801707(+)$1	232	135	139	11.9999
CAGG	chr9:95993200-95993471(+)$1	271	210	214	11.9999
CAGG	chrX:153236560-153236807(-)$1	247	195	199	11.9999
CAGG	chr3:52324197-52324522(+)$1	325	136	140	11.9999
CAGG	chr13:76055760-76056056(-)$1	296	34	38	11.9999
CAGG	chr10:5726823-5727097(+)$1	274	24	28	11.9999
CAGG	chr7:151877768-151878039(-)$1	271	179	183	11.9999
CAGG	chr17:73483912-73484131(+)$1	219	53	57	11.9999
CAGG	chr16:70696394-70696632(-)$1	238	27	31	11.9999
CAGG	chrX:19001992-19002243(-)$1	251	201	205	11.9999
CAGG	chr9:117063861-117064094(+)$1	233	16	20	11.9999
CAGG	chr17:7321680-7321929(+)$1	249	172	176	11.9999
CAGG	chr17:78518872-78519114(+)$1	242	53	57	11.9999
CAGG	chr15:65619996-65620250(-)$1	254	55	59	11.9999
CAGG	chr12:112757277-112757603(-)$1	326	232	236	11.9999
cagg	chr3:53850822-53851085(-)$1	263	119	123	11.9999
CAGG	chr9:6849407-6849674(+)$1	267	96	100	11.9999
CAGG	chr14:75550642-75550930(-)$1	288	56	60	11.9999
CAGG	chr9:117044663-117044896(+)$1	233	70	74	11.9999
cagg	chr14:102549270-102549501(-)$1	231	56	60	11.9999
Cagg	chr15:99192195-99192443(+)$1	248	63	67	11.9999
CAGG	chr17:78518988-78519281(+)$1	293	84	88	11.9999
CAGG	chr1:22213812-22214053(-)$1	241	22	26	11.9999
CAGG	chr9:117063251-117063454(+)$1	203	56	60	11.9999
CAGG	chr6:31704104-31704372(-)$1	268	28	32	11.9999
CAGG	chr3:187439949-187440202(-)$1	253	243	247	11.9999
CAGG	chr9:117072851-117073094(+)$1	243	77	81	11.9999
cagg	chr21:45875325-45875621(+)$1	296	29	33	11.9999
CAGG	chr17:2282720-2282957(+)$1	237	28	32	11.9999
CAGG	chr15:34819062-34819308(-)$1	246	137	141	11.9999
CAGG	chr20:4835816-4836125(-)$1	309	141	145	11.9999
CAGG	chr2:62932900-62933158(+)$1	258	38	42	11.9999
CAGG	chr11:727497-727738(+)$1	241	18	22	11.9999
CAGG	chr4:151936524-151936784(-)$1	260	70	74	11.9999
CAGG	chr11:71949867-71950181(+)$1	314	78	82	11.9999
CAGG	chr9:117044696-117044912(+)$1	216	37	41	11.9999
CAGG	chr16:70194908-70195205(+)$1	297	26	30	11.9999
CAGG	chr2:219575514-219575813(+)$1	299	0	4	11.9999
CAGG	chr17:37617899-37618142(+)$1	243	49	53	11.9999
CAGG	chr2:219553331-219553586(+)$1	255	203	207	11.9999
CAGG	chr16:2156746-2157011(-)$1	265	16	20	11.9999
CAGG	chr1:39775218-39775469(+)$1	251	2	6	11.9999
cagg	chr2:118673656-118673915(-)$1	259	186	190	11.9999
CAGG	chr13:76056084-76056316(-)$1	232	22	26	11.9999
CAGG	chr17:27448862-27449075(-)$1	213	65	69	11.9999
CAGG	chr9:139098822-139099127(-)$1	305	127	131	11.9999
CAGG	chr1:22856951-22857195(+)$1	244	129	133	11.9999
CAGG	chr16:73081551-73081822(-)$1	271	169	173	11.9999
CAGG	chr1:226033662-226033934(-)$1	272	55	59	11.9999
CAGG	chr6:43129206-43129470(+)$1	264	11	15	11.9999
CAGG	chr3:57743195-57743469(+)$1	274	234	238	11.9999
CAGG	chr19:1981017-1981318(+)$1	301	82	86	11.9999
CAGg	chr1:110527523-110527777(+)$1	254	29	33	11.9999
cagg	chr19:10490190-10490428(-)$1	238	112	116	11.9999
CAGG	chr19:38571987-38572294(+)$1	307	1	5	11.9999
CAGG	chr9:131583154-131583429(-)$1	275	44	48	11.9999
CAGG	chr9:96054488-96054709(+)$1	221	114	118	11.9999
CAGG	chr16:2821002-2821275(+)$1	273	133	137	11.9999
CAGG	chrX:153587649-153587872(-)$1	223	18	22	11.9999
CAGG	chr17:42271084-42271362(-)$1	278	26	30	11.9999
CAGG	chr6:158734944-158735219(+)$1	275	211	215	11.9999
CAGG	chr4:1809858-1810102(+)$1	244	226	230	11.9999
CAGG	chr2:62934120-62934405(+)$1	285	52	56	11.9999
cagg	chr2:130886615-130886870(-)$1	255	92	96	11.9999
CAGG	chr17:35632750-35633043(-)$1	293	73	77	11.9999
CAGG	chr19:12811909-12812143(-)$1	234	1	5	11.9999
CAGG	chr2:62933064-62933284(+)$1	220	206	210	11.9999
CAGG	chr7:151921518-151921784(-)$1	266	162	166	11.9999
CAGG	chr2:97525790-97526074(-)$1	284	224	228	11.9999
CAGG	chr7:1581155-1581377(+)$1	222	4	8	11.9999
CAGG	chr12:123470125-123470381(-)$1	256	13	17	11.9999
CAGG	chr12:62860567-62860833(+)$1	266	100	104	11.9999
CAGG	chr17:53045812-53046110(-)$1	298	11	15	11.9999
CAGG	chr3:58139249-58139466(+)$1	217	77	81	11.9999
CAGG	chr19:10800327-10800559(+)$1	232	141	145	11.9999
CAGG	chr9:140342613-140342939(-)$1	326	57	61	11.9999
CAGG	chr16:28223001-28223293(-)$1	292	66	70	11.9999
CAGG	chr4:184020529-184020807(+)$1	278	171	175	11.9999
CAGG	chr1:19438960-19439181(-)$1	221	69	73	11.9999
CAGG	chr7:913668-913929(+)$1	261	88	92	11.9999
CAGG	chr17:36924054-36924322(-)$1	268	14	18	11.9999
CAGG	chr1:1228685-1228963(-)$1	278	27	31	11.9999
CAGG	chr16:70696445-70696732(-)$1	287	127	131	11.9999
CAGG	chr12:112756928-112757148(-)$1	220	50	54	11.9999
CAGG	chr16:30934256-30934549(-)$1	293	28	32	11.9999
CAGG	chr9:117073426-117073651(+)$1	225	83	87	11.9999
CAGG	chr8:97506228-97506486(+)$1	258	89	93	11.9999
CAGG	chr9:95993076-95993341(+)$1	265	6	10	11.9999
CAGG	chr15:28513633-28513862(-)$1	229	4	8	11.9999

#otherMatches

#Struct PSSM
====	chr2:62932836-62933100(+)$1	264	102	106	11.9999
iiii	chr19:10801475-10801707(+)$1	232	135	139	11.9999
HHHH	chr9:95993200-95993471(+)$1	271	210	214	11.9999
a444	chrX:153236560-153236807(-)$1	247	195	199	11.9999
deee	chr3:52324197-52324522(+)$1	325	136	140	11.9999
f!!b	chr13:76055760-76056056(-)$1	296	34	38	11.9999
BLLL	chr10:5726823-5727097(+)$1	274	24	28	11.9999
ffff	chr7:151877768-151878039(-)$1	271	179	183	11.9999
eecc	chr17:73483912-73484131(+)$1	219	53	57	11.9999
dddc	chr16:70696394-70696632(-)$1	238	27	31	11.9999
a[cc	chrX:19001992-19002243(-)$1	251	201	205	11.9999
dddd	chr9:117063861-117064094(+)$1	233	16	20	11.9999
eeee	chr17:7321680-7321929(+)$1	249	172	176	11.9999
eehh	chr17:78518872-78519114(+)$1	242	53	57	11.9999
gg[e	chr15:65619996-65620250(-)$1	254	55	59	11.9999
hhhh	chr12:112757277-112757603(-)$1	326	232	236	11.9999
gggg	chr3:53850822-53851085(-)$1	263	119	123	11.9999
[ccc	chr9:6849407-6849674(+)$1	267	96	100	11.9999
BDDD	chr14:75550642-75550930(-)$1	288	56	60	11.9999
eeee	chr9:117044663-117044896(+)$1	233	70	74	11.9999
^^ee	chr14:102549270-102549501(-)$1	231	56	60	11.9999
dddd	chr15:99192195-99192443(+)$1	248	63	67	11.9999
""ee	chr17:78518988-78519281(+)$1	293	84	88	11.9999
E:dd	chr1:22213812-22214053(-)$1	241	22	26	11.9999
rrrr	chr9:117063251-117063454(+)$1	203	56	60	11.9999
qqbb	chr6:31704104-31704372(-)$1	268	28	32	11.9999
dddC	chr3:187439949-187440202(-)$1	253	243	247	11.9999
dddg	chr9:117072851-117073094(+)$1	243	77	81	11.9999
HHHH	chr21:45875325-45875621(+)$1	296	29	33	11.9999
ba[c	chr17:2282720-2282957(+)$1	237	28	32	11.9999
ffff	chr15:34819062-34819308(-)$1	246	137	141	11.9999
LLLH	chr20:4835816-4836125(-)$1	309	141	145	11.9999
====	chr2:62932900-62933158(+)$1	258	38	42	11.9999
cc[b	chr11:727497-727738(+)$1	241	18	22	11.9999
]bbC	chr4:151936524-151936784(-)$1	260	70	74	11.9999
qqqq	chr11:71949867-71950181(+)$1	314	78	82	11.9999
BBdd	chr9:117044696-117044912(+)$1	216	37	41	11.9999
mmmd	chr16:70194908-70195205(+)$1	297	26	30	11.9999
::DD	chr2:219575514-219575813(+)$1	299	0	4	11.9999
c]ff	chr17:37617899-37618142(+)$1	243	49	53	11.9999
gggg	chr2:219553331-219553586(+)$1	255	203	207	11.9999
eeee	chr16:2156746-2157011(-)$1	265	16	20	11.9999
ffff	chr1:39775218-39775469(+)$1	251	2	6	11.9999
bbgg	chr2:118673656-118673915(-)$1	259	186	190	11.9999
HHHH	chr13:76056084-76056316(-)$1	232	22	26	11.9999
ccbb	chr17:27448862-27449075(-)$1	213	65	69	11.9999
fffD	chr9:139098822-139099127(-)$1	305	127	131	11.9999
dddd	chr1:22856951-22857195(+)$1	244	129	133	11.9999
ammm	chr16:73081551-73081822(-)$1	271	169	173	11.9999
::BB	chr1:226033662-226033934(-)$1	272	55	59	11.9999
GGGG	chr6:43129206-43129470(+)$1	264	11	15	11.9999
CCCH	chr3:57743195-57743469(+)$1	274	234	238	11.9999
fffn	chr19:1981017-1981318(+)$1	301	82	86	11.9999
c###	chr1:110527523-110527777(+)$1	254	29	33	11.9999
hh$$	chr19:10490190-10490428(-)$1	238	112	116	11.9999
====	chr19:38571987-38572294(+)$1	307	1	5	11.9999
FFFF	chr9:131583154-131583429(-)$1	275	44	48	11.9999
mmmc	chr9:96054488-96054709(+)$1	221	114	118	11.9999
b666	chr16:2821002-2821275(+)$1	273	133	137	11.9999
DDDH	chrX:153587649-153587872(-)$1	223	18	22	11.9999
flll	chr17:42271084-42271362(-)$1	278	26	30	11.9999
c]cc	chr6:158734944-158735219(+)$1	275	211	215	11.9999
ffBB	chr4:1809858-1810102(+)$1	244	226	230	11.9999
ffff	chr2:62934120-62934405(+)$1	285	52	56	11.9999
ia[d	chr2:130886615-130886870(-)$1	255	92	96	11.9999
eeee	chr17:35632750-35633043(-)$1	293	73	77	11.9999
DDD:	chr19:12811909-12812143(-)$1	234	1	5	11.9999
CC}C	chr2:62933064-62933284(+)$1	220	206	210	11.9999
eeee	chr7:151921518-151921784(-)$1	266	162	166	11.9999
====	chr2:97525790-97526074(-)$1	284	224	228	11.9999
dddp	chr7:1581155-1581377(+)$1	222	4	8	11.9999
CKKE	chr12:123470125-123470381(-)$1	256	13	17	11.9999
gggg	chr12:62860567-62860833(+)$1	266	100	104	11.9999
B{EE	chr17:53045812-53046110(-)$1	298	11	15	11.9999
dnnn	chr3:58139249-58139466(+)$1	217	77	81	11.9999
ggg^	chr19:10800327-10800559(+)$1	232	141	145	11.9999
hhhh	chr9:140342613-140342939(-)$1	326	57	61	11.9999
FKKC	chr16:28223001-28223293(-)$1	292	66	70	11.9999
eee:	chr4:184020529-184020807(+)$1	278	171	175	11.9999
bb[d	chr1:19438960-19439181(-)$1	221	69	73	11.9999
hhhh	chr7:913668-913929(+)$1	261	88	92	11.9999
oodd	chr17:36924054-36924322(-)$1	268	14	18	11.9999
i[bb	chr1:1228685-1228963(-)$1	278	27	31	11.9999
dddc	chr16:70696445-70696732(-)$1	287	127	131	11.9999
LLDD	chr12:112756928-112757148(-)$1	220	50	54	11.9999
dddd	chr16:30934256-30934549(-)$1	293	28	32	11.9999
[iii	chr9:117073426-117073651(+)$1	225	83	87	11.9999
c22d	chr8:97506228-97506486(+)$1	258	89	93	11.9999
DDDD	chr9:95993076-95993341(+)$1	265	6	10	11.9999
eeee	chr15:28513633-28513862(-)$1	229	4	8	11.9999

#DB
((((	chr2:62932836-62933100(+)$1	1	102	106	11.9999
))))	chr19:10801475-10801707(+)$1	1	135	139	11.9999
))))	chr9:95993200-95993471(+)$1	1	210	214	11.9999
)...	chrX:153236560-153236807(-)$1	1	195	199	11.9999
))))	chr3:52324197-52324522(+)$1	1	136	140	11.9999
(..(	chr13:76055760-76056056(-)$1	1	34	38	11.9999
(...	chr10:5726823-5727097(+)$1	1	24	28	11.9999
))))	chr7:151877768-151878039(-)$1	1	179	183	11.9999
((((	chr17:73483912-73484131(+)$1	1	53	57	11.9999
((((	chr16:70696394-70696632(-)$1	1	27	31	11.9999
(.((	chrX:19001992-19002243(-)$1	1	201	205	11.9999
((((	chr9:117063861-117064094(+)$1	1	16	20	11.9999
))))	chr17:7321680-7321929(+)$1	1	172	176	11.9999
))((	chr17:78518872-78519114(+)$1	1	53	57	11.9999
((.(	chr15:65619996-65620250(-)$1	1	55	59	11.9999
((((	chr12:112757277-112757603(-)$1	1	232	236	11.9999
))))	chr3:53850822-53851085(-)$1	1	119	123	11.9999
.(((	chr9:6849407-6849674(+)$1	1	96	100	11.9999
((((	chr14:75550642-75550930(-)$1	1	56	60	11.9999
((((	chr9:117044663-117044896(+)$1	1	70	74	11.9999
..))	chr14:102549270-102549501(-)$1	1	56	60	11.9999
((((	chr15:99192195-99192443(+)$1	1	63	67	11.9999
..((	chr17:78518988-78519281(+)$1	1	84	88	11.9999
(.((	chr1:22213812-22214053(-)$1	1	22	26	11.9999
....	chr9:117063251-117063454(+)$1	1	56	60	11.9999
..))	chr6:31704104-31704372(-)$1	1	28	32	11.9999
))))	chr3:187439949-187440202(-)$1	1	243	247	11.9999
((((	chr9:117072851-117073094(+)$1	1	77	81	11.9999
((((	chr21:45875325-45875621(+)$1	1	29	33	11.9999
((.(	chr17:2282720-2282957(+)$1	1	28	32	11.9999
))))	chr15:34819062-34819308(-)$1	1	137	141	11.9999
...(	chr20:4835816-4836125(-)$1	1	141	145	11.9999
((((	chr2:62932900-62933158(+)$1	1	38	42	11.9999
((.(	chr11:727497-727738(+)$1	1	18	22	11.9999
.))(	chr4:151936524-151936784(-)$1	1	70	74	11.9999
....	chr11:71949867-71950181(+)$1	1	78	82	11.9999
((((	chr9:117044696-117044912(+)$1	1	37	41	11.9999
...)	chr16:70194908-70195205(+)$1	1	26	30	11.9999
..((	chr2:219575514-219575813(+)$1	1	0	4	11.9999
).))	chr17:37617899-37618142(+)$1	1	49	53	11.9999
))))	chr2:219553331-219553586(+)$1	1	203	207	11.9999
((((	chr16:2156746-2157011(-)$1	1	16	20	11.9999
((((	chr1:39775218-39775469(+)$1	1	2	6	11.9999
))((	chr2:118673656-118673915(-)$1	1	186	190	11.9999
((((	chr13:76056084-76056316(-)$1	1	22	26	11.9999
))))	chr17:27448862-27449075(-)$1	1	65	69	11.9999
)))(	chr9:139098822-139099127(-)$1	1	127	131	11.9999
))))	chr1:22856951-22857195(+)$1	1	129	133	11.9999
(...	chr16:73081551-73081822(-)$1	1	169	173	11.9999
..((	chr1:226033662-226033934(-)$1	1	55	59	11.9999
((((	chr6:43129206-43129470(+)$1	1	11	15	11.9999
))))	chr3:57743195-57743469(+)$1	1	234	238	11.9999
(((.	chr19:1981017-1981318(+)$1	1	82	86	11.9999
(...	chr1:110527523-110527777(+)$1	1	29	33	11.9999
((..	chr19:10490190-10490428(-)$1	1	112	116	11.9999
((((	chr19:38571987-38572294(+)$1	1	1	5	11.9999
((((	chr9:131583154-131583429(-)$1	1	44	48	11.9999
...)	chr9:96054488-96054709(+)$1	1	114	118	11.9999
)...	chr16:2821002-2821275(+)$1	1	133	137	11.9999
((((	chrX:153587649-153587872(-)$1	1	18	22	11.9999
(...	chr17:42271084-42271362(-)$1	1	26	30	11.9999
).))	chr6:158734944-158735219(+)$1	1	211	215	11.9999
))))	chr4:1809858-1810102(+)$1	1	226	230	11.9999
))))	chr2:62934120-62934405(+)$1	1	52	56	11.9999
)(.(	chr2:130886615-130886870(-)$1	1	92	96	11.9999
((((	chr17:35632750-35633043(-)$1	1	73	77	11.9999
(((.	chr19:12811909-12812143(-)$1	1	1	5	11.9999
)).)	chr2:62933064-62933284(+)$1	1	206	210	11.9999
((((	chr7:151921518-151921784(-)$1	1	162	166	11.9999
))))	chr2:97525790-97526074(-)$1	1	224	228	11.9999
(((.	chr7:1581155-1581377(+)$1	1	4	8	11.9999
(..(	chr12:123470125-123470381(-)$1	1	13	17	11.9999
))))	chr12:62860567-62860833(+)$1	1	100	104	11.9999
(.((	chr17:53045812-53046110(-)$1	1	11	15	11.9999
(...	chr3:58139249-58139466(+)$1	1	77	81	11.9999
(((.	chr19:10800327-10800559(+)$1	1	141	145	11.9999
))))	chr9:140342613-140342939(-)$1	1	57	61	11.9999
(..(	chr16:28223001-28223293(-)$1	1	66	70	11.9999
))).	chr4:184020529-184020807(+)$1	1	171	175	11.9999
((.(	chr1:19438960-19439181(-)$1	1	69	73	11.9999
((((	chr7:913668-913929(+)$1	1	88	92	11.9999
..))	chr17:36924054-36924322(-)$1	1	14	18	11.9999
(.((	chr1:1228685-1228963(-)$1	1	27	31	11.9999
((((	chr16:70696445-70696732(-)$1	1	127	131	11.9999
..((	chr12:112756928-112757148(-)$1	1	50	54	11.9999
((((	chr16:30934256-30934549(-)$1	1	28	32	11.9999
.(((	chr9:117073426-117073651(+)$1	1	83	87	11.9999
)..)	chr8:97506228-97506486(+)$1	1	89	93	11.9999
((((	chr9:95993076-95993341(+)$1	1	6	10	11.9999
((((	chr15:28513633-28513862(-)$1	1	4	8	11.9999

#PSSM
C : 0.93	c : 0.06	
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	
G : 0.91	g : 0.08	

#score	1079.9999999999995
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_UTR_m2_run1.nuc.txt

#NT
AGGAG	chr19:19603315-19603622(+)$1	307	240	245	15.0000
AGGAG	chr12:31256773-31257018(+)$1	245	107	112	15.0000
AGGAG	chr14:102549782-102549986(-)$1	204	71	76	15.0000
AGGAG	chr2:70890604-70890909(-)$1	305	129	134	15.0000
AGGAG	chr17:79634712-79635000(+)$1	288	93	98	15.0000
AGGAG	chr11:835963-836195(+)$1	232	193	198	15.0000
AGGAG	chr12:72288515-72288763(+)$1	248	189	194	15.0000
aggag	chr4:174253074-174253301(-)$1	227	9	14	15.0000
AGGAG	chr17:4794253-4794514(+)$1	261	149	154	15.0000
AGGAG	chr15:59041754-59042066(-)$1	312	30	35	15.0000
AGGAG	chr1:173684031-173684352(+)$1	321	113	118	15.0000
AGGAG	chr8:92090750-92090993(+)$1	243	126	131	15.0000
AGGAG	chr14:73566297-73566562(+)$1	265	75	80	15.0000
aggag	chr3:17783871-17784157(-)$1	286	125	130	15.0000
AGGAG	chr14:102551063-102551301(-)$1	238	222	227	15.0000
AGGAG	chr5:137902593-137902849(-)$1	256	57	62	15.0000
AGGAG	chr5:33445348-33445579(+)$1	231	110	115	15.0000
AGGAG	chr2:74592561-74592887(-)$1	326	107	112	15.0000
AGGAG	chr12:123665607-123665855(-)$1	248	103	108	15.0000
AGGAG	chr15:49170266-49170630(+)$1	364	264	269	15.0000
AGGAG	chr1:224588624-224588871(-)$1	247	102	107	15.0000
AGGAG	chr1:223983464-223983701(-)$1	237	69	74	15.0000
AGGAG	chr1:16641671-16642015(-)$1	344	190	195	15.0000
AGGAG	chr22:22048938-22049178(+)$1	240	103	108	15.0000
AGGAG	chr12:56566111-56566374(-)$1	263	8	13	15.0000
AGGAG	chr3:184045127-184045335(+)$1	208	19	24	15.0000
AGGAG	chr17:38175958-38176188(-)$1	230	83	88	15.0000
AGGAG	chr17:61907123-61907394(+)$1	271	48	53	15.0000
AGGAG	chr19:48982400-48982677(+)$1	277	53	58	15.0000
AGGAG	chr12:49233695-49233954(-)$1	259	163	168	15.0000
AGGAG	chr6:161528833-161529100(+)$1	267	95	100	15.0000
AGGAG	chr22:22038978-22039231(+)$1	253	135	140	15.0000
AGGAG	chrX:118986773-118987010(-)$1	237	132	137	15.0000
AGGAG	chr19:55652454-55652697(-)$1	243	106	111	15.0000
AGGAG	chr5:883960-884282(-)$1	322	150	155	15.0000
AGGAG	chr5:65474519-65474771(+)$1	252	25	30	15.0000
AGGAG	chr6:31726443-31726731(+)$1	288	56	61	15.0000
AGGAG	chr4:54325367-54325629(+)$1	262	131	136	15.0000
AGGAG	chr19:45422353-45422684(+)$1	331	108	113	15.0000
AGGAG	chr15:63349082-63349415(+)$1	333	168	173	15.0000
AGGAG	chr1:150523425-150523702(+)$1	277	81	86	15.0000
AGGAG	chr19:54711281-54711549(+)$1	268	148	153	15.0000
AGGAG	chr6:34857071-34857322(+)$1	251	115	120	15.0000
AGGAG	chr3:47918817-47919114(-)$1	297	173	178	15.0000
AGGAG	chr15:28502106-28502336(-)$1	230	80	85	15.0000
AGGAG	chr17:40724843-40725137(-)$1	294	93	98	15.0000
AGGAG	chr12:123001812-123002077(-)$1	265	143	148	15.0000
AGGAG	chr2:48025688-48025959(+)$1	271	242	247	15.0000
AGGAG	chr19:10672375-10672608(-)$1	233	101	106	15.0000
AGGAG	chr17:80151507-80151801(-)$1	294	215	220	15.0000
AGGAG	chr19:39936350-39936565(+)$1	215	15	20	15.0000
AGGAG	chr17:46653627-46653890(-)$1	263	112	117	15.0000
AGGAG	chr17:7810438-7810665(+)$1	227	27	32	15.0000
AGGAG	chr2:136540284-136540557(+)$1	273	84	89	15.0000
AGGAG	chr22:41487714-41487961(+)$1	247	37	42	15.0000
AGGAG	chr8:144413325-144413593(-)$1	268	5	10	15.0000
AGGAG	chr3:42674161-42674397(+)$1	236	47	52	15.0000
AGGAG	chr16:11876065-11876325(-)$1	260	131	136	15.0000
AGGAG	chr8:27605491-27605721(-)$1	230	222	227	15.0000
AGGAG	chr1:1635165-1635460(-)$1	295	237	242	15.0000

#otherMatches

#Struct PSSM
fff]d	chr1:202123298-202123547(-)$1	249	109	114	15.0000
eee]d	chr19:19603315-19603622(+)$1	307	240	245	15.0000
hhhhh	chr12:31256773-31257018(+)$1	245	107	112	15.0000
]aabb	chr14:102549782-102549986(-)$1	204	71	76	15.0000
EEEKK	chr2:70890604-70890909(-)$1	305	129	134	15.0000
cc444	chr17:79634712-79635000(+)$1	288	93	98	15.0000
[bb[e	chr11:835963-836195(+)$1	232	193	198	15.0000
eeeee	chr12:72288515-72288763(+)$1	248	189	194	15.0000
:::::	chr4:174253074-174253301(-)$1	227	9	14	15.0000
:hhhh	chr17:4794253-4794514(+)$1	261	149	154	15.0000
BB{BB	chr15:59041754-59042066(-)$1	312	30	35	15.0000
5555h	chr1:173684031-173684352(+)$1	321	113	118	15.0000
ccc::	chr8:92090750-92090993(+)$1	243	126	131	15.0000
ggggg	chr14:73566297-73566562(+)$1	265	75	80	15.0000
}GGGG	chr3:17783871-17784157(-)$1	286	125	130	15.0000
c333b	chr14:102551063-102551301(-)$1	238	222	227	15.0000
ddd$$	chr5:137902593-137902849(-)$1	256	57	62	15.0000
cc]==	chr5:33445348-33445579(+)$1	231	110	115	15.0000
(((((	chr2:74592561-74592887(-)$1	326	107	112	15.0000
JJJJJ	chr12:123665607-123665855(-)$1	248	103	108	15.0000
a"""b	chr15:49170266-49170630(+)$1	364	264	269	15.0000
fffff	chr1:224588624-224588871(-)$1	247	102	107	15.0000
fffnn	chr1:223983464-223983701(-)$1	237	69	74	15.0000
:::dd	chr1:16641671-16642015(-)$1	344	190	195	15.0000
g]a:b	chr22:22048938-22049178(+)$1	240	103	108	15.0000
fffff	chr12:56566111-56566374(-)$1	263	8	13	15.0000
MEEEE	chr3:184045127-184045335(+)$1	208	19	24	15.0000
IIIII	chr17:38175958-38176188(-)$1	230	83	88	15.0000
leeee	chr17:61907123-61907394(+)$1	271	48	53	15.0000
EEEEJ	chr19:48982400-48982677(+)$1	277	53	58	15.0000
"eeee	chr12:49233695-49233954(-)$1	259	163	168	15.0000
ooooc	chr6:161528833-161529100(+)$1	267	95	100	15.0000
##ggg	chr22:22038978-22039231(+)$1	253	135	140	15.0000
DDYYB	chrX:118986773-118987010(-)$1	237	132	137	15.0000
:IIII	chr19:55652454-55652697(-)$1	243	106	111	15.0000
:GGGG	chr5:883960-884282(-)$1	322	150	155	15.0000
{FFFF	chr5:65474519-65474771(+)$1	252	25	30	15.0000
!ffff	chr6:31726443-31726731(+)$1	288	56	61	15.0000
wbb]c	chr4:54325367-54325629(+)$1	262	131	136	15.0000
[aooo	chr19:45422353-45422684(+)$1	331	108	113	15.0000
3cccg	chr15:63349082-63349415(+)$1	333	168	173	15.0000
fffff	chr1:150523425-150523702(+)$1	277	81	86	15.0000
nnnna	chr19:54711281-54711549(+)$1	268	148	153	15.0000
2a]cc	chr6:34857071-34857322(+)$1	251	115	120	15.0000
obbDD	chr3:47918817-47919114(-)$1	297	173	178	15.0000
fffff	chr15:28502106-28502336(-)$1	230	80	85	15.0000
ceeee	chr17:40724843-40725137(-)$1	294	93	98	15.0000
LLDDD	chr12:123001812-123002077(-)$1	265	143	148	15.0000
\\\\\	chr2:48025688-48025959(+)$1	271	242	247	15.0000
ggggg	chr19:10672375-10672608(-)$1	233	101	106	15.0000
cwwww	chr17:80151507-80151801(-)$1	294	215	220	15.0000
$$$$$	chr19:39936350-39936565(+)$1	215	15	20	15.0000
a[fff	chr17:46653627-46653890(-)$1	263	112	117	15.0000
3dddd	chr17:7810438-7810665(+)$1	227	27	32	15.0000
=====	chr2:136540284-136540557(+)$1	273	84	89	15.0000
dd[ee	chr22:41487714-41487961(+)$1	247	37	42	15.0000
JJJJJ	chr8:144413325-144413593(-)$1	268	5	10	15.0000
::CCC	chr3:42674161-42674397(+)$1	236	47	52	15.0000
ciiii	chr16:11876065-11876325(-)$1	260	131	136	15.0000
CCC}B	chr8:27605491-27605721(-)$1	230	222	227	15.0000
bGGGG	chr1:1635165-1635460(-)$1	295	237	242	15.0000

#DB
))).)	chr1:202123298-202123547(-)$1	1	109	114	15.0000
))).)	chr19:19603315-19603622(+)$1	1	240	245	15.0000
(((((	chr12:31256773-31257018(+)$1	1	107	112	15.0000
.))))	chr14:102549782-102549986(-)$1	1	71	76	15.0000
(((..	chr2:70890604-70890909(-)$1	1	129	134	15.0000
))...	chr17:79634712-79635000(+)$1	1	93	98	15.0000
.((.(	chr11:835963-836195(+)$1	1	193	198	15.0000
)))))	chr12:72288515-72288763(+)$1	1	189	194	15.0000
.....	chr4:174253074-174253301(-)$1	1	9	14	15.0000
.((((	chr17:4794253-4794514(+)$1	1	149	154	15.0000
((.((	chr15:59041754-59042066(-)$1	1	30	35	15.0000
....)	chr1:173684031-173684352(+)$1	1	113	118	15.0000
)))..	chr8:92090750-92090993(+)$1	1	126	131	15.0000
)))))	chr14:73566297-73566562(+)$1	1	75	80	15.0000
.))))	chr3:17783871-17784157(-)$1	1	125	130	15.0000
)...)	chr14:102551063-102551301(-)$1	1	222	227	15.0000
(((..	chr5:137902593-137902849(-)$1	1	57	62	15.0000
)).))	chr5:33445348-33445579(+)$1	1	110	115	15.0000
.....	chr2:74592561-74592887(-)$1	1	107	112	15.0000
)))))	chr12:123665607-123665855(-)$1	1	103	108	15.0000
(...(	chr15:49170266-49170630(+)$1	1	264	269	15.0000
)))))	chr1:224588624-224588871(-)$1	1	102	107	15.0000
(((..	chr1:223983464-223983701(-)$1	1	69	74	15.0000
...((	chr1:16641671-16642015(-)$1	1	190	195	15.0000
).).(	chr22:22048938-22049178(+)$1	1	103	108	15.0000
(((((	chr12:56566111-56566374(-)$1	1	8	13	15.0000
.((((	chr3:184045127-184045335(+)$1	1	19	24	15.0000
)))))	chr17:38175958-38176188(-)$1	1	83	88	15.0000
.))))	chr17:61907123-61907394(+)$1	1	48	53	15.0000
(((((	chr19:48982400-48982677(+)$1	1	53	58	15.0000
.((((	chr12:49233695-49233954(-)$1	1	163	168	15.0000
....)	chr6:161528833-161529100(+)$1	1	95	100	15.0000
..(((	chr22:22038978-22039231(+)$1	1	135	140	15.0000
))..)	chrX:118986773-118987010(-)$1	1	132	137	15.0000
.((((	chr19:55652454-55652697(-)$1	1	106	111	15.0000
.((((	chr5:883960-884282(-)$1	1	150	155	15.0000
.((((	chr5:65474519-65474771(+)$1	1	25	30	15.0000
.((((	chr6:31726443-31726731(+)$1	1	56	61	15.0000
.)).)	chr4:54325367-54325629(+)$1	1	131	136	15.0000
.(...	chr19:45422353-45422684(+)$1	1	108	113	15.0000
.))))	chr15:63349082-63349415(+)$1	1	168	173	15.0000
)))))	chr1:150523425-150523702(+)$1	1	81	86	15.0000
....)	chr19:54711281-54711549(+)$1	1	148	153	15.0000
.).))	chr6:34857071-34857322(+)$1	1	115	120	15.0000
.))))	chr3:47918817-47919114(-)$1	1	173	178	15.0000
(((((	chr15:28502106-28502336(-)$1	1	80	85	15.0000
)))))	chr17:40724843-40725137(-)$1	1	93	98	15.0000
..(((	chr12:123001812-123002077(-)$1	1	143	148	15.0000
.....	chr2:48025688-48025959(+)$1	1	242	247	15.0000
)))))	chr19:10672375-10672608(-)$1	1	101	106	15.0000
(....	chr17:80151507-80151801(-)$1	1	215	220	15.0000
.....	chr19:39936350-39936565(+)$1	1	15	20	15.0000
(.(((	chr17:46653627-46653890(-)$1	1	112	117	15.0000
.))))	chr17:7810438-7810665(+)$1	1	27	32	15.0000
)))))	chr2:136540284-136540557(+)$1	1	84	89	15.0000
((.((	chr22:41487714-41487961(+)$1	1	37	42	15.0000
(((((	chr8:144413325-144413593(-)$1	1	5	10	15.0000
..(((	chr3:42674161-42674397(+)$1	1	47	52	15.0000
)))))	chr16:11876065-11876325(-)$1	1	131	136	15.0000
))).)	chr8:27605491-27605721(-)$1	1	222	227	15.0000
)))))	chr1:1635165-1635460(-)$1	1	237	242	15.0000

#PSSM
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	

#score	915.0000000000001
#seq	61
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_transcript_m2_run1.nuc.txt

#NT
cacauacacacacacac	chr10:77370144-77370350(+)$1	206	96	113	41.2631
cacaugcgcacacacac	chr11:2152476-2152684(-)$1	208	10	27	32.9298
cacacacacacacacac	chr2:101458356-101458563(+)$1	207	187	204	40.3859
cacacacacacacacac	chr6:143528517-143528840(+)$1	323	140	157	40.3859
cacauaggcacacacau	chr16:81504470-81504678(+)$1	208	71	88	29.5964
cacacacacacacacaU	chr12:124842296-124842508(-)$1	212	154	171	37.3157
ugcauacacacacacac	chr12:131441227-131441548(+)$1	321	197	214	32.7543
cacauacacacucacac	chrX:3740567-3740810(-)$1	243	24	41	37.0526
cacauucacacacacac	chr11:70482189-70482408(-)$1	219	70	87	37.4035
uauauacacacacacau	chr20:8329596-8329872(+)$1	276	77	94	29.7719
cacaugcacacacauac	chr19:54062880-54063126(+)$1	246	124	141	32.7543
cacaugcacacacacac	chr3:127865012-127865261(-)$1	249	82	99	37.4035
cacagucacacacacaa	chr7:157632145-157632423(-)$1	278	150	167	31.4385
cacauauacacacacac	chr19:54062493-54062749(+)$1	256	118	135	37.3157
cacauacacacacacca	chr16:46949114-46949322(+)$1	208	78	95	33.5438
cacacacacuuacacac	chr3:188309981-188310239(+)$1	258	187	204	31.9649
CACAUAUAUACACACAU	chr13:79903118-79903390(-)$1	272	11	28	30.3859
CACAUAUACACACACUG	chr1:93798515-93798787(-)$1	272	137	154	29.4210
cacauacacauucacac	chr8:140815040-140815288(-)$1	248	96	113	32.9298
cacauacacacacauau	chr6:161421612-161421901(+)$1	289	145	162	33.5438
cacauccucacacacac	chr6:159048073-159048278(+)$1	205	117	134	32.5789
cacacacacacacacac	chr19:6717257-6717485(-)$1	228	42	59	40.3859
cacacucacacacaccc	chr2:40001078-40001441(-)$1	363	179	196	32.1403
cacauauauacacacac	chr11:14676806-14677097(+)$1	291	79	96	33.4561
cacagacacacacacac	chr16:46949809-46950023(+)$1	214	1	18	38.6315
cacacgcacacacacag	chr21:47791963-47792214(+)$1	251	110	127	33.1929
cucauacacacucacac	chr3:124493927-124494146(-)$1	219	65	82	32.4035
cacacacacacagacac	chr15:26049469-26049794(-)$1	325	142	159	35.7368
cgcacacacacgcacac	chr11:2152454-2152673(-)$1	219	5	22	31.6140
cacauacccacacacac	chr7:94834239-94834487(+)$1	248	38	55	36.7017
cacacacacucgcacac	chr6:158290852-158291117(+)$1	265	31	48	31.8771
uacaaacauacacacac	chr20:62396273-62396595(-)$1	322	179	196	30.7368
uacauacauacacacau	chr8:120898679-120898940(+)$1	261	88	105	30.3859
cacacacacaaacacac	chr11:2152716-2152918(-)$1	202	111	128	36.0877
cacacacacacacccag	chr5:173146345-173146615(-)$1	270	244	261	32.4035
cagauacacucacacac	chr18:76935464-76935753(+)$1	289	48	65	32.4035
cacacacaaacacacac	chr8:57107025-57107348(-)$1	323	147	164	36.1754
cacacacacacacacac	chr13:97981999-97982219(+)$1	220	82	99	40.3859
cacacacacacaccccc	chr2:8920548-8920834(-)$1	286	142	159	31.3508
cacauacacacacacac	chr16:11266091-11266302(+)$1	211	90	107	41.2631
cacacacacacacacac	chr2:64164986-64165241(-)$1	255	23	40	40.3859
cacauucacacacacac	chr5:52288621-52288827(+)$1	206	98	115	37.4035
cacacacacacacacac	chr1:1453924-1454191(+)$1	267	123	140	40.3859
cacacacacaaacacag	chr11:2152798-2153000(-)$1	202	69	86	32.7543
cacauacagacgcacac	chr4:5827583-5827844(+)$1	261	35	52	32.9298
uauauacacacacacac	chr1:11890710-11890991(+)$1	281	106	123	32.8421
cacacacacgcacacac	chr11:2153085-2153288(-)$1	203	72	89	35.9122
cacacacacacagacac	chr3:127865476-127865711(-)$1	235	55	72	35.7368
AACAUAAACACACACAA	chr13:75988575-75988801(-)$1	226	88	105	29.5964
caaauacacauacacac	chr15:31974861-31975069(-)$1	208	43	60	32.5789
CACAUACAGCcacacac	chr19:33948994-33949292(-)$1	298	145	162	32.6666
cacauacauacacacac	chr1:8624791-8625021(-)$1	230	144	161	37.4035
cacucacacauacacac	chr18:74116113-74116372(-)$1	259	69	86	31.4385
AACAUAAACACACACAA	chr13:75988601-75988827(-)$1	226	114	131	29.5964
cacauacacacacacac	chr16:11266102-11266313(+)$1	211	79	96	41.2631
cacacacacacacacac	chr20:31960753-31960978(-)$1	225	0	17	40.3859

#otherMatches

#Struct PSSM
::::::::::::::ddd	chr15:26049299-26049538(-)$1	239	138	155	34.0701
:::::::::::::::::	chr10:77370144-77370350(+)$1	206	96	113	41.2631
CC::ddddqqqqqqqqd	chr11:2152476-2152684(-)$1	208	10	27	32.9298
DDD::::::::::::::	chr2:101458356-101458563(+)$1	207	187	204	40.3859
:::::::::::::::::	chr6:143528517-143528840(+)$1	323	140	157	40.3859
ddd::::::::::::::	chr16:81504470-81504678(+)$1	208	71	88	29.5964
CC:::::::::::::::	chr12:124842296-124842508(-)$1	212	154	171	37.3157
5eeeee55555eeeee:	chr12:131441227-131441548(+)$1	321	197	214	32.7543
^^^^^^^^^^^^^^^^^	chrX:3740567-3740810(-)$1	243	24	41	37.0526
:::::::::::::::::	chr11:70482189-70482408(-)$1	219	70	87	37.4035
======]ccc8888888	chr20:8329596-8329872(+)$1	276	77	94	29.7719
bmmmmbb::::::::::	chr19:54062880-54063126(+)$1	246	124	141	32.7543
mmmmccc::::::::::	chr3:127865012-127865261(-)$1	249	82	99	37.4035
$$$$ccc^^^^^^^^^^	chr7:157632145-157632423(-)$1	278	150	167	31.4385
:::::::::::::::::	chr19:54062493-54062749(+)$1	256	118	135	37.3157
^^^^^^^^^^^^^^^^^	chr16:46949114-46949322(+)$1	208	78	95	33.5438
:::::::::::::::::	chr3:188309981-188310239(+)$1	258	187	204	31.9649
:::::::::::::::::	chr13:79903118-79903390(-)$1	272	11	28	30.3859
^^^^^^^^^^^^^^^^^	chr1:93798515-93798787(-)$1	272	137	154	29.4210
DDDNNNNNEEEEENNNN	chr8:140815040-140815288(-)$1	248	96	113	32.9298
^^^^^^^^^========	chr6:161421612-161421901(+)$1	289	145	162	33.5438
:::::::::::::::::	chr6:159048073-159048278(+)$1	205	117	134	32.5789
CC:::::::::::::::	chr19:6717257-6717485(-)$1	228	42	59	40.3859
e]bb999999999dddd	chr2:40001078-40001441(-)$1	363	179	196	32.1403
sssggggggg]ccc]dd	chr11:14676806-14677097(+)$1	291	79	96	33.4561
::::::::::::::::B	chr16:46949809-46950023(+)$1	214	1	18	38.6315
ffff]bb:::::::::c	chr21:47791963-47792214(+)$1	251	110	127	33.1929
::::::::::::::fff	chr3:124493927-124494146(-)$1	219	65	82	32.4035
66666ccc4444dddd2	chr15:26049469-26049794(-)$1	325	142	159	35.7368
::EEEEE{BB{BB{DDD	chr11:2152454-2152673(-)$1	219	5	22	31.6140
:::::::::::::::::	chr7:94834239-94834487(+)$1	248	38	55	36.7017
:::::::::::cccsss	chr6:158290852-158291117(+)$1	265	31	48	31.8771
:::::::::::::::::	chr20:62396273-62396595(-)$1	322	179	196	30.7368
::::::::EEEEE::dd	chr8:120898679-120898940(+)$1	261	88	105	30.3859
b::::::::::::::::	chr11:2152716-2152918(-)$1	202	111	128	36.0877
:::::::::::::::DD	chr5:173146345-173146615(-)$1	270	244	261	32.4035
:::::::::::::::::	chr18:76935464-76935753(+)$1	289	48	65	32.4035
:::::::::::::::::	chr8:57107025-57107348(-)$1	323	147	164	36.1754
:::::::::::ccc$$$	chr13:97981999-97982219(+)$1	220	82	99	40.3859
:::::::::::::::::	chr2:8920548-8920834(-)$1	286	142	159	31.3508
:::::::::::::::::	chr16:11266091-11266302(+)$1	211	90	107	41.2631
::::::::::::::DDD	chr2:64164986-64165241(-)$1	255	23	40	40.3859
ee:::::::::::::::	chr5:52288621-52288827(+)$1	206	98	115	37.4035
:::::::::::::::::	chr1:1453924-1454191(+)$1	267	123	140	40.3859
b:::::::::::::::c	chr11:2152798-2153000(-)$1	202	69	86	32.7543
:::::::::::::::::	chr4:5827583-5827844(+)$1	261	35	52	32.9298
======>>>>>>>>>>>	chr1:11890710-11890991(+)$1	281	106	123	32.8421
b::::::::cccooooo	chr11:2153085-2153288(-)$1	203	72	89	35.9122
JJJJ::::::bbooooo	chr3:127865476-127865711(-)$1	235	55	72	35.7368
^^^^^^^^^^^^^^^^^	chr13:75988575-75988801(-)$1	226	88	105	29.5964
MMMMDDDDNNNNNGGGG	chr15:31974861-31975069(-)$1	208	43	60	32.5789
^^^^^^^^^^^^^^^^^	chr19:33948994-33949292(-)$1	298	145	162	32.6666
:::::::::::::::::	chr1:8624791-8625021(-)$1	230	144	161	37.4035
qqqqqqqqdddd]bbcc	chr18:74116113-74116372(-)$1	259	69	86	31.4385
^^^^^^^^^^^^^^^^^	chr13:75988601-75988827(-)$1	226	114	131	29.5964
:::::::::::::::::	chr16:11266102-11266313(+)$1	211	79	96	41.2631
:::::::::::::::::	chr20:31960753-31960978(-)$1	225	0	17	40.3859

#DB
..............(((	chr15:26049299-26049538(-)$1	1	138	155	34.0701
.................	chr10:77370144-77370350(+)$1	1	96	113	41.2631
((..((((........)	chr11:2152476-2152684(-)$1	1	10	27	32.9298
)))..............	chr2:101458356-101458563(+)$1	1	187	204	40.3859
.................	chr6:143528517-143528840(+)$1	1	140	157	40.3859
)))..............	chr16:81504470-81504678(+)$1	1	71	88	29.5964
))...............	chr12:124842296-124842508(-)$1	1	154	171	37.3157
.))))).....))))).	chr12:131441227-131441548(+)$1	1	197	214	32.7543
.................	chrX:3740567-3740810(-)$1	1	24	41	37.0526
.................	chr11:70482189-70482408(-)$1	1	70	87	37.4035
)))))).))).......	chr20:8329596-8329872(+)$1	1	77	94	29.7719
(....))..........	chr19:54062880-54063126(+)$1	1	124	141	32.7543
....)))..........	chr3:127865012-127865261(-)$1	1	82	99	37.4035
....(((..........	chr7:157632145-157632423(-)$1	1	150	167	31.4385
.................	chr19:54062493-54062749(+)$1	1	118	135	37.3157
.................	chr16:46949114-46949322(+)$1	1	78	95	33.5438
.................	chr3:188309981-188310239(+)$1	1	187	204	31.9649
.................	chr13:79903118-79903390(-)$1	1	11	28	30.3859
.................	chr1:93798515-93798787(-)$1	1	137	154	29.4210
(((.....(((((....	chr8:140815040-140815288(-)$1	1	96	113	32.9298
.........))))))))	chr6:161421612-161421901(+)$1	1	145	162	33.5438
.................	chr6:159048073-159048278(+)$1	1	117	134	32.5789
((...............	chr19:6717257-6717485(-)$1	1	42	59	40.3859
).)).........))))	chr2:40001078-40001441(-)$1	1	179	196	32.1403
...))))))).))).))	chr11:14676806-14677097(+)$1	1	79	96	33.4561
................(	chr16:46949809-46950023(+)$1	1	1	18	38.6315
)))).)).........(	chr21:47791963-47792214(+)$1	1	110	127	33.1929
..............(((	chr3:124493927-124494146(-)$1	1	65	82	32.4035
.....)))....)))).	chr15:26049469-26049794(-)$1	1	142	159	35.7368
..(((((.((.((.(((	chr11:2152454-2152673(-)$1	1	5	22	31.6140
.................	chr7:94834239-94834487(+)$1	1	38	55	36.7017
...........(((...	chr6:158290852-158291117(+)$1	1	31	48	31.8771
.................	chr20:62396273-62396595(-)$1	1	179	196	30.7368
........(((((..((	chr8:120898679-120898940(+)$1	1	88	105	30.3859
)................	chr11:2152716-2152918(-)$1	1	111	128	36.0877
...............))	chr5:173146345-173146615(-)$1	1	244	261	32.4035
.................	chr18:76935464-76935753(+)$1	1	48	65	32.4035
.................	chr8:57107025-57107348(-)$1	1	147	164	36.1754
...........(((...	chr13:97981999-97982219(+)$1	1	82	99	40.3859
.................	chr2:8920548-8920834(-)$1	1	142	159	31.3508
.................	chr16:11266091-11266302(+)$1	1	90	107	41.2631
..............(((	chr2:64164986-64165241(-)$1	1	23	40	40.3859
))...............	chr5:52288621-52288827(+)$1	1	98	115	37.4035
.................	chr1:1453924-1454191(+)$1	1	123	140	40.3859
)...............(	chr11:2152798-2153000(-)$1	1	69	86	32.7543
.................	chr4:5827583-5827844(+)$1	1	35	52	32.9298
))))))...........	chr1:11890710-11890991(+)$1	1	106	123	32.8421
)........(((.....	chr11:2153085-2153288(-)$1	1	72	89	35.9122
((((......((.....	chr3:127865476-127865711(-)$1	1	55	72	35.7368
.................	chr13:75988575-75988801(-)$1	1	88	105	29.5964
....((((.....((((	chr15:31974861-31975069(-)$1	1	43	60	32.5789
.................	chr19:33948994-33949292(-)$1	1	145	162	32.6666
.................	chr1:8624791-8625021(-)$1	1	144	161	37.4035
........)))).))))	chr18:74116113-74116372(-)$1	1	69	86	31.4385
.................	chr13:75988601-75988827(-)$1	1	114	131	29.5964
.................	chr16:11266102-11266313(+)$1	1	79	96	41.2631
.................	chr20:31960753-31960978(-)$1	1	0	17	40.3859

#PSSM
c : 0.82	u : 0.08	C : 0.05	A : 0.03	
a : 0.85	A : 0.08	g : 0.03	u : 0.01	
c : 0.84	C : 0.08	u : 0.03	g : 0.01	a : 0.01	
a : 0.89	A : 0.08	u : 0.01	
u : 0.47	c : 0.38	U : 0.08	g : 0.03	a : 0.01	
a : 0.75	A : 0.08	g : 0.07	u : 0.07	c : 0.01	
c : 0.84	g : 0.03	u : 0.03	U : 0.03	A : 0.03	C : 0.01	
a : 0.84	A : 0.08	g : 0.03	u : 0.01	c : 0.01	
c : 0.80	u : 0.07	C : 0.05	U : 0.01	a : 0.01	g : 0.01	G : 0.01	
a : 0.84	A : 0.07	u : 0.05	g : 0.01	C : 0.01	
c : 0.82	u : 0.07	C : 0.07	a : 0.03	
a : 0.82	A : 0.07	u : 0.05	g : 0.05	
c : 0.89	C : 0.07	g : 0.03	
a : 0.89	A : 0.07	c : 0.03	
c : 0.89	C : 0.07	u : 0.03	
a : 0.87	c : 0.05	A : 0.05	U : 0.01	
c : 0.73	u : 0.08	g : 0.05	U : 0.03	a : 0.03	A : 0.03	G : 0.01	

#score	1976.8245614035106
#seq	57
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_UTR_m1_run1.nuc.txt

#NT
agcggcggcggcggcg	chr7:152132816-152133085(-)$1	269	134	150	24.9000
ggcgcgcgcggcggcg	chr17:1359324-1359641(-)$1	317	184	200	24.5000
GCGGGGAGCGGCUGGG	chr3:122785825-122786119(+)$1	294	70	86	19.2000
GCCGGGGAUGGCGGCG	chr16:71879807-71880081(+)$1	274	121	137	25.0000
UCCUGGGGCGGCGGCG	chr13:115000388-115000694(+)$1	306	55	71	24.6000
GGCGGCUGCAGCGGCG	chr18:9136698-9136990(+)$1	292	172	188	22.3000
GCCGGGGUCUGCGGAG	chr11:67806433-67806685(+)$1	252	165	181	21.1000
gcgaggggcggcagcg	chr16:9185468-9185697(+)$1	229	160	176	23.3000
GGUGGGGGCAGCCGCG	chr12:53574405-53574725(+)$1	320	119	135	21.2000
GGAGGGGGCGGCGGCG	chr9:88555996-88556294(+)$1	298	106	122	28.6000
GCAGGGGGCGGGGUCG	chr11:70244583-70244809(+)$1	226	0	16	22.1000
GGCAGAGGCGGCGGCC	chr12:49351050-49351337(-)$1	287	201	217	20.3000
ggcggggccgggggcg	chr2:61404462-61404734(+)$1	272	72	88	24.5000
GCUgcggggggcggcg	chr7:30029212-30029524(-)$1	312	77	93	22.4000
gcgguuggcggcggcg	chr13:52158559-52158845(+)$1	286	225	241	23.4000
ggcgggggcggaggcg	chr11:101981267-101981573(+)$1	306	123	139	28.1000
GCUGGGUGCUGCGGCG	chr19:5719890-5720254(-)$1	364	157	173	22.6000
gccgggggugggggcg	chr2:183903038-183903299(-)$1	261	208	224	26.2000
ggcggcgguggcggcg	chr19:2785408-2785699(+)$1	291	143	159	25.8000
gccggcgcugguggcg	chr7:129710300-129710604(+)$1	304	234	250	19.4000
GCCCGGCGAGGCgggg	chr6:17393832-17394063(+)$1	231	165	181	18.5000
gcggggggcaggggcg	chr2:220143990-220144269(+)$1	279	198	214	24.1000
GCCGGGUGCGCAGGCG	chr12:123465184-123465498(+)$1	314	245	261	21.2000
GCGGGCCGCGGCGGCU	chr3:38178319-38178688(-)$1	369	312	328	20.3000
GCGGGCGGCGGCGGAG	chr3:13008986-13009270(-)$1	284	84	100	24.6000
gcggcgggcggcUGCG	chr16:2264605-2264887(-)$1	282	55	71	23.2000
GGCCACGGCGGCGGCG	chr1:78148865-78149161(-)$1	296	159	175	22.2000
ggcggggcugggggcg	chr17:17726746-17727012(-)$1	266	11	27	21.0000
GCCGGGGGCGGCUGGG	chr9:130953608-130953945(-)$1	337	242	258	25.0000
ggcgguggcggcggcg	chr17:79603844-79604123(-)$1	279	45	61	28.3000
GCCGGGAGCGGGAGCG	chr22:50699941-50700245(-)$1	304	153	169	22.2000
GCCGGGGGCUGGAGAG	chr16:28875340-28875677(+)$1	337	27	43	18.5000
ggcgcgggcggcggcg	chr9:136932967-136933243(-)$1	276	220	236	27.9000
CCGAGGCGCGGCGGCG	chr1:16939812-16940149(-)$1	337	243	259	19.5000
ggCCGAGACGGCGGCG	chr16:30709499-30709764(+)$1	265	32	48	21.1000
GUCAGAGGCGGCGGCG	chr10:129924473-129924745(-)$1	272	174	190	23.4000
GGCGGCGGCGGCGGCG	chr2:228336773-228337084(+)$1	311	122	138	29.3000
CCCGGGUUCGGCGGCG	chr12:19592505-19592768(+)$1	263	199	215	20.8000
GCCGAGGGAAGAGGCG	chr6:24775079-24775369(+)$1	290	34	50	18.2000
gcaggcggcggcggcg	chr6:41514083-41514349(+)$1	266	158	174	27.7000
ggcggcggcggcggcg	chr17:2240705-2241031(+)$1	326	139	155	29.3000
gccgggggcggcggcg	chr15:64752843-64753153(+)$1	310	284	300	32.6000
GGCGGCGGCAGCGGCG	chr4:54930598-54930872(-)$1	274	124	140	25.8000
GCACGGGGCUGCCGCG	chr16:31519487-31519800(-)$1	313	166	182	19.2000
GCGCGCGGCCGCGGCG	chrX:153285198-153285450(-)$1	252	4	20	21.3000
GCCGCGCGGGGCGGGG	chr1:146714244-146714498(+)$1	254	79	95	18.1000
gcggcgggcgcgggcg	chr7:155437292-155437518(+)$1	226	57	73	19.5000
CGCUGGGGCGGCGGAG	chr2:153191801-153192082(+)$1	281	98	114	19.8000
gcgcggggcggcggcg	chr8:25042151-25042402(+)$1	251	195	211	27.3000

#otherMatches

#Struct PSSM
:ccc[aooooooa]cc	chr17:43225832-43226099(+)$1	267	53	69	19.0000
ee:BB{BB{IIIIIII	chr7:152132816-152133085(-)$1	269	134	150	24.9000
eeeee]bb]iiiiiii	chr17:1359324-1359641(-)$1	317	184	200	24.5000
B}EEEEEJJJJJJJJJ	chr3:122785825-122786119(+)$1	294	70	86	19.2000
"iiiiiiiii[bb[ee	chr16:71879807-71880081(+)$1	274	121	137	25.0000
FFccc[ccc[bbmmmm	chr13:115000388-115000694(+)$1	306	55	71	24.6000
ddd]dddd]cccccc3	chr18:9136698-9136990(+)$1	292	172	188	22.3000
444cccbbeeeee22c	chr11:67806433-67806685(+)$1	252	165	181	21.1000
:ffffff[bb[a[ddd	chr16:9185468-9185697(+)$1	229	160	176	23.3000
dCCC{DDDD{BB{DDD	chr12:53574405-53574725(+)$1	320	119	135	21.2000
GNNNNNCCCggggggg	chr9:88555996-88556294(+)$1	298	106	122	28.6000
bb[=============	chr11:70244583-70244809(+)$1	226	0	16	22.1000
##ccc!!ccc[bbppp	chr12:49351050-49351337(-)$1	287	201	217	20.3000
GDDDD{CCC:gggggg	chr2:61404462-61404734(+)$1	272	72	88	24.5000
fffooooooffffff]	chr7:30029212-30029524(-)$1	312	77	93	22.4000
fff[dddd[ccclllc	chr13:52158559-52158845(+)$1	286	225	241	23.4000
fff[dddd[bb!!fff	chr11:101981267-101981573(+)$1	306	123	139	28.1000
EEE}FFFFFF======	chr19:5719890-5720254(-)$1	364	157	173	22.6000
FFFFFF}A}FFFFFF~	chr2:183903038-183903299(-)$1	261	208	224	26.2000
[bbmmmmbb]eeeee]	chr19:2785408-2785699(+)$1	291	143	159	25.8000
]eeeee:DDDD}GGGG	chr7:129710300-129710604(+)$1	304	234	250	19.4000
ddddd]a22eeeeea]	chr6:17393832-17394063(+)$1	231	165	181	18.5000
ffFFFFFFYYEEEEEE	chr2:220143990-220144269(+)$1	279	198	214	24.1000
FFFFFF}DDDDYYGGG	chr12:123465184-123465498(+)$1	314	245	261	21.2000
DDDDFFFFFF}FFFFF	chr3:38178319-38178688(-)$1	369	312	328	20.3000
dddddddd]cccDDDD	chr3:13008986-13009270(-)$1	284	84	100	24.6000
ff[bb[a[gggggggn	chr16:2264605-2264887(-)$1	282	55	71	23.2000
b]bb]a]bb]gggggg	chr1:78148865-78149161(-)$1	296	159	175	22.2000
ffffff!!eeeee[bb	chr17:17726746-17727012(-)$1	266	11	27	21.0000
YYEEEEE}HHHHHHHH	chr9:130953608-130953945(-)$1	337	242	258	25.0000
ddd[hhhhhhhh[bb#	chr17:79603844-79604123(-)$1	279	45	61	28.3000
2eeeee:bbmmmmbbd	chr22:50699941-50700245(-)$1	304	153	169	22.2000
hhhhhh[cccnnnnnc	chr16:28875340-28875677(+)$1	337	27	43	18.5000
}DDDDA}BB}FFFFFF	chr9:136932967-136933243(-)$1	276	220	236	27.9000
d"""ccc[gggggggl	chr1:16939812-16940149(-)$1	337	243	259	19.5000
[ddddllldddd]bb]	chr16:30709499-30709764(+)$1	265	32	48	21.1000
ii$$$$$bbmmmmbb7	chr10:129924473-129924745(-)$1	272	174	190	23.4000
ffffffccc[iiiiii	chr2:228336773-228337084(+)$1	311	122	138	29.3000
hhhhh[ddddoooooo	chr12:19592505-19592768(+)$1	263	199	215	20.8000
==="""ccc####ccc	chr6:24775079-24775369(+)$1	290	34	50	18.2000
BBYYCCCBBHHHHHHH	chr6:41514083-41514349(+)$1	266	158	174	27.7000
mmmmeeeee]bbJJJJ	chr17:2240705-2241031(+)$1	326	139	155	29.3000
ffff:ggggggglllg	chr15:64752843-64753153(+)$1	310	284	300	32.6000
m===========DDDD	chr4:54930598-54930872(-)$1	274	124	140	25.8000
ccceeeeebb]ccc]b	chr16:31519487-31519800(-)$1	313	166	182	19.2000
EEEEE{DDDDgggggg	chrX:153285198-153285450(-)$1	252	4	20	21.3000
JJJ{A{BB{CCC:eee	chr1:146714244-146714498(+)$1	254	79	95	18.1000
a]ggggggg22eeeee	chr7:155437292-155437518(+)$1	226	57	73	19.5000
eeee]eeeee]a5555	chr2:153191801-153192082(+)$1	281	98	114	19.8000
ooccc:::ddddmmmm	chr8:25042151-25042402(+)$1	251	195	211	27.3000

#DB
.(((.(......).))	chr17:43225832-43226099(+)$1	1	53	69	19.0000
)).((.((.(((((((	chr7:152132816-152133085(-)$1	1	134	150	24.9000
))))).)).)))))))	chr17:1359324-1359641(-)$1	1	184	200	24.5000
).))))))))))))))	chr3:122785825-122786119(+)$1	1	70	86	19.2000
.(((((((((.((.((	chr16:71879807-71880081(+)$1	1	121	137	25.0000
(((((.(((.((....	chr13:115000388-115000694(+)$1	1	55	71	24.6000
))).)))).)))))).	chr18:9136698-9136990(+)$1	1	172	188	22.3000
...))))))))))..)	chr11:67806433-67806685(+)$1	1	165	181	21.1000
.((((((.((.(.(((	chr16:9185468-9185697(+)$1	1	160	176	23.3000
)(((.((((.((.(((	chr12:53574405-53574725(+)$1	1	119	135	21.2000
(.....((((((((((	chr9:88555996-88556294(+)$1	1	106	122	28.6000
((.(((((((((((((	chr11:70244583-70244809(+)$1	1	0	16	22.1000
..(((..(((.((...	chr12:49351050-49351337(-)$1	1	201	217	20.3000
(((((.(((.((((((	chr2:61404462-61404734(+)$1	1	72	88	24.5000
(((......)))))).	chr7:30029212-30029524(-)$1	1	77	93	22.4000
(((.((((.(((...)	chr13:52158559-52158845(+)$1	1	225	241	23.4000
(((.((((.((..(((	chr11:101981267-101981573(+)$1	1	123	139	28.1000
))).))))))((((((	chr19:5719890-5720254(-)$1	1	157	173	22.6000
)))))).).)))))).	chr2:183903038-183903299(-)$1	1	208	224	26.2000
.((....)).))))).	chr19:2785408-2785699(+)$1	1	143	159	25.8000
.))))).)))).))))	chr7:129710300-129710604(+)$1	1	234	250	19.4000
))))).)..)))))).	chr6:17393832-17394063(+)$1	1	165	181	18.5000
))))))))..))))))	chr2:220143990-220144269(+)$1	1	198	214	24.1000
)))))).))))..)))	chr12:123465184-123465498(+)$1	1	245	261	21.2000
)))))))))).)))))	chr3:38178319-38178688(-)$1	1	312	328	20.3000
)))))))).)))))))	chr3:13008986-13009270(-)$1	1	84	100	24.6000
((.((.(.(((((((.	chr16:2264605-2264887(-)$1	1	55	71	23.2000
).)).).)).))))))	chr1:78148865-78149161(-)$1	1	159	175	22.2000
((((((..(((((.((	chr17:17726746-17727012(-)$1	1	11	27	21.0000
..))))).))))))))	chr9:130953608-130953945(-)$1	1	242	258	25.0000
(((.((((((((.((.	chr17:79603844-79604123(-)$1	1	45	61	28.3000
.))))).((....))(	chr22:50699941-50700245(-)$1	1	153	169	22.2000
((((((.(((.....)	chr16:28875340-28875677(+)$1	1	27	43	18.5000
.))))).)).))))))	chr9:136932967-136933243(-)$1	1	220	236	27.9000
(...(((.(((((((.	chr1:16939812-16940149(-)$1	1	243	259	19.5000
.((((...)))).)).	chr16:30709499-30709764(+)$1	1	32	48	21.1000
((.....((....)).	chr10:129924473-129924745(-)$1	1	174	190	23.4000
))))))(((.((((((	chr2:228336773-228337084(+)$1	1	122	138	29.3000
(((((.((((......	chr12:19592505-19592768(+)$1	1	199	215	20.8000
(((...(((....(((	chr6:24775079-24775369(+)$1	1	34	50	18.2000
))..))))))))))))	chr6:41514083-41514349(+)$1	1	158	174	27.7000
....))))).))))))	chr17:2240705-2241031(+)$1	1	139	155	29.3000
)))).(((((((...)	chr15:64752843-64753153(+)$1	1	284	300	32.6000
.)))))))))))))))	chr4:54930598-54930872(-)$1	1	124	140	25.8000
)))))))))).))).)	chr16:31519487-31519800(-)$1	1	166	182	19.2000
(((((.((((((((((	chrX:153285198-153285450(-)$1	1	4	20	21.3000
(((.(.((.(((.(((	chr1:146714244-146714498(+)$1	1	79	95	18.1000
).)))))))..)))))	chr7:155437292-155437518(+)$1	1	57	73	19.5000
)))).))))).)....	chr2:153191801-153192082(+)$1	1	98	114	19.8000
..)))...((((....	chr8:25042151-25042402(+)$1	1	195	211	27.3000

#PSSM
G : 0.50	g : 0.40	C : 0.06	a : 0.02	U : 0.02	
C : 0.40	g : 0.19	c : 0.19	G : 0.16	u : 0.02	U : 0.02	
C : 0.38	c : 0.25	g : 0.12	G : 0.10	U : 0.06	A : 0.06	a : 0.02	
g : 0.38	G : 0.38	C : 0.10	A : 0.06	U : 0.04	a : 0.02	c : 0.02	
G : 0.52	g : 0.30	c : 0.10	A : 0.04	u : 0.02	C : 0.02	
G : 0.38	g : 0.27	C : 0.14	c : 0.10	A : 0.06	u : 0.04	
g : 0.40	G : 0.38	U : 0.08	C : 0.08	A : 0.04	c : 0.02	
G : 0.50	g : 0.36	c : 0.06	A : 0.04	U : 0.04	
C : 0.50	c : 0.30	u : 0.08	A : 0.04	a : 0.02	U : 0.02	g : 0.02	G : 0.02	
g : 0.40	G : 0.40	A : 0.08	U : 0.08	a : 0.02	C : 0.02	
G : 0.56	g : 0.40	C : 0.02	c : 0.02	
C : 0.48	c : 0.25	g : 0.10	G : 0.06	a : 0.04	A : 0.04	u : 0.02	
G : 0.44	g : 0.38	U : 0.06	C : 0.04	A : 0.04	c : 0.02	a : 0.02	
G : 0.56	g : 0.42	U : 0.02	
C : 0.44	c : 0.40	A : 0.08	G : 0.06	g : 0.02	
G : 0.54	g : 0.42	C : 0.02	U : 0.02	

#score	1158.4000000000008
#seq	50
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456SOS_UTP18_transcript_m2_run2.nuc.txt

#NT
ccU	chr3:128211693-128211976(+)$1	283	88	91	8.9999
CCU	chr1:109642780-109643000(+)$1	220	54	57	8.9999
CCU	chr11:5275486-5275725(-)$1	239	32	35	8.9999
CCU	chr11:65210937-65211206(+)$1	269	75	78	8.9999
CCU	chr17:27047519-27047735(+)$1	216	7	10	8.9999
CCU	chr19:2271416-2271649(+)$1	233	10	13	8.9999
CCU	chr15:66795058-66795303(-)$1	245	103	106	8.9999
CCU	chr1:228333670-228333930(+)$1	260	114	117	8.9999
CCU	chr11:93454887-93455135(+)$1	248	62	65	8.9999
CCU	chr2:159313512-159313832(+)$1	320	160	163	8.9999
CCU	chr17:27050366-27050608(+)$1	242	5	8	8.9999
CCU	chr5:138614414-138614638(+)$1	224	1	4	8.9999
CCU	chr7:148580782-148581085(-)$1	303	8	11	8.9999
ccu	chr17:18965262-18965550(+)$1	288	64	67	8.9999
CCU	chr20:26189972-26190251(-)$1	279	23	26	8.9999
ccu	chr16:592325-592661(+)$1	336	55	58	8.9999
CCU	chr7:22896127-22896407(+)$1	280	168	171	8.9999
ccu	chr7:1492783-1493046(-)$1	263	1	4	8.9999
CCU	chr1:205718999-205719270(-)$1	271	9	12	8.9999
CCU	chr11:75111337-75111658(+)$1	321	96	99	8.9999
CCU	chr11:93454740-93454989(+)$1	249	18	21	8.9999
CCU	chr1:109642837-109643053(+)$1	216	4	7	8.9999
CCU	chr20:26189854-26190153(-)$1	299	3	6	8.9999
CCU	chr11:17096146-17096390(-)$1	244	14	17	8.9999
CCU	chrX:135961286-135961534(-)$1	248	156	159	8.9999
CCU	chr9:100777604-100777861(+)$1	257	1	4	8.9999
CCU	chr7:98479313-98479529(+)$1	216	151	154	8.9999
CCU	chr12:104341341-104341592(+)$1	251	3	6	8.9999
CCU	chr9:100777578-100777803(+)$1	225	27	30	8.9999
CCU	chr14:102548650-102548879(-)$1	229	73	76	8.9999
CCU	chr1:109642821-109643031(+)$1	210	13	16	8.9999
CCU	chr17:27047468-27047719(+)$1	251	58	61	8.9999
CCU	chr11:17097271-17097515(-)$1	244	73	76	8.9999
CCU	chrX:20154138-20154359(-)$1	221	93	96	8.9999
CCU	chr11:122928726-122928972(-)$1	246	38	41	8.9999
CCU	chr15:66793493-66793753(-)$1	260	23	26	8.9999
CCU	chr12:6619570-6619809(+)$1	239	79	82	8.9999
CCU	chr11:17096098-17096346(-)$1	248	4	7	8.9999
CCU	chr2:203157698-203157926(+)$1	228	103	106	8.9999
CCU	chr9:136216194-136216426(+)$1	232	138	141	8.9999
CCU	chr9:139621124-139621367(-)$1	243	42	45	8.9999
CCU	chr7:98479336-98479603(+)$1	267	128	131	8.9999
ccu	chr19:893461-893690(+)$1	229	83	86	8.9999
CCU	chr9:136217601-136217883(+)$1	282	31	34	8.9999
CCU	chr9:136216142-136216394(+)$1	252	50	53	8.9999
CCU	chr20:26190056-26190358(-)$1	302	13	16	8.9999
ccu	chr11:122929521-122929760(-)$1	239	122	125	8.9999
ccu	chr13:92001189-92001430(+)$1	241	46	49	8.9999
CCU	chr15:66794259-66794527(-)$1	268	37	40	8.9999
CCU	chrX:135961250-135961486(-)$1	236	108	111	8.9999
CCU	chr1:28905164-28905423(-)$1	259	106	109	8.9999
CCU	chr2:232321054-232321285(-)$1	231	25	28	8.9999
CCU	chr17:74557628-74557883(+)$1	255	40	43	8.9999
ccu	chr17:19091317-19091541(+)$1	224	113	116	8.9999
CCU	chr4:83816903-83817166(-)$1	263	216	219	8.9999
CCU	chr7:98479274-98479513(+)$1	239	24	27	8.9999
CCU	chr17:80051553-80051788(-)$1	235	26	29	8.9999
CCU	chr17:74557083-74557364(+)$1	281	134	137	8.9999
CCU	chr10:70514825-70515097(+)$1	272	123	126	8.9999
CCU	chr2:133015120-133015366(-)$1	246	24	27	8.9999
CCU	chr17:74554771-74555056(+)$1	285	21	24	8.9999
CCU	chr1:109642808-109643021(+)$1	213	26	29	8.9999
CCU	chr4:1239034-1239325(-)$1	291	17	20	8.9999
CCU	chrX:20154159-20154409(-)$1	250	143	146	8.9999
CCU	chr11:62622002-62622223(-)$1	221	29	32	8.9999
CCU	chr17:27050597-27050866(+)$1	269	28	31	8.9999
CCU	chr19:3982413-3982654(-)$1	241	10	13	8.9999
CCU	chr4:53578777-53579004(+)$1	227	29	32	8.9999
CCU	chr18:47015522-47015781(-)$1	259	17	20	8.9999
CCU	chr12:6619516-6619761(+)$1	245	14	17	8.9999
CCU	chr3:160232628-160232891(-)$1	263	131	134	8.9999
CCU	chr20:2637214-2637441(+)$1	227	93	96	8.9999
CCU	chr6:133136369-133136604(+)$1	235	107	110	8.9999
CCU	chr2:203141063-203141332(+)$1	269	51	54	8.9999
ccu	chr17:19093316-19093583(-)$1	267	127	130	8.9999
CCU	chr19:50000888-50001151(+)$1	263	30	33	8.9999
CCU	chr2:203155962-203156248(+)$1	286	43	46	8.9999
ccu	chr11:122928707-122928926(-)$1	219	120	123	8.9999
CCU	chr8:142139000-142139245(+)$1	245	52	55	8.9999
CCU	chr11:122929985-122930224(-)$1	239	16	19	8.9999
ccu	chr17:19091313-19091517(+)$1	204	117	120	8.9999
CCU	chr16:1426158-1426406(-)$1	248	21	24	8.9999
CCU	chr9:136216856-136217107(+)$1	251	35	38	8.9999
CCU	chr19:1408179-1408466(+)$1	287	40	43	8.9999
CCU	chr3:186502507-186502735(+)$1	228	43	46	8.9999
CCU	chr10:101996745-101996999(-)$1	254	54	57	8.9999
CCU	chr14:105933354-105933611(+)$1	257	36	39	8.9999
ccu	chr2:97559874-97560144(-)$1	270	7	10	8.9999
CCU	chr14:76070448-76070691(+)$1	243	15	18	8.9999
CCU	chr22:22899783-22900056(-)$1	273	48	51	8.9999
CCU	chr19:12814314-12814586(-)$1	272	6	9	8.9999
CCU	chr11:93454806-93455053(+)$1	247	143	146	8.9999
CCU	chr4:1803739-1804021(+)$1	282	52	55	8.9999
CCU	chr5:137896649-137896870(-)$1	221	141	144	8.9999
CCU	chr11:93454643-93454877(+)$1	234	115	118	8.9999
CCU	chr17:19091288-19091510(+)$1	222	12	15	8.9999
CCU	chr4:174253033-174253339(-)$1	306	1	4	8.9999
CCU	chr1:76253498-76253738(+)$1	240	155	158	8.9999

#otherMatches

#Struct PSSM
:::	chr7:5569357-5569611(-)$1	254	4	7	8.9999
ddd	chr3:128211693-128211976(+)$1	283	88	91	8.9999
333	chr1:109642780-109643000(+)$1	220	54	57	8.9999
see	chr11:5275486-5275725(-)$1	239	32	35	8.9999
ddd	chr11:65210937-65211206(+)$1	269	75	78	8.9999
:::	chr17:27047519-27047735(+)$1	216	7	10	8.9999
GGG	chr19:2271416-2271649(+)$1	233	10	13	8.9999
nnn	chr15:66795058-66795303(-)$1	245	103	106	8.9999
ggg	chr1:228333670-228333930(+)$1	260	114	117	8.9999
HHH	chr11:93454887-93455135(+)$1	248	62	65	8.9999
EEE	chr2:159313512-159313832(+)$1	320	160	163	8.9999
DDD	chr17:27050366-27050608(+)$1	242	5	8	8.9999
fff	chr5:138614414-138614638(+)$1	224	1	4	8.9999
gg[	chr7:148580782-148581085(-)$1	303	8	11	8.9999
ooo	chr17:18965262-18965550(+)$1	288	64	67	8.9999
ee[	chr20:26189972-26190251(-)$1	279	23	26	8.9999
DD{	chr16:592325-592661(+)$1	336	55	58	8.9999
ccc	chr7:22896127-22896407(+)$1	280	168	171	8.9999
:::	chr7:1492783-1493046(-)$1	263	1	4	8.9999
DDD	chr1:205718999-205719270(-)$1	271	9	12	8.9999
hhh	chr11:75111337-75111658(+)$1	321	96	99	8.9999
KBB	chr11:93454740-93454989(+)$1	249	18	21	8.9999
ELL	chr1:109642837-109643053(+)$1	216	4	7	8.9999
III	chr20:26189854-26190153(-)$1	299	3	6	8.9999
:::	chr11:17096146-17096390(-)$1	244	14	17	8.9999
BB\	chrX:135961286-135961534(-)$1	248	156	159	8.9999
hhh	chr9:100777604-100777861(+)$1	257	1	4	8.9999
ddd	chr7:98479313-98479529(+)$1	216	151	154	8.9999
FFF	chr12:104341341-104341592(+)$1	251	3	6	8.9999
hhh	chr9:100777578-100777803(+)$1	225	27	30	8.9999
E::	chr14:102548650-102548879(-)$1	229	73	76	8.9999
bbq	chr1:109642821-109643031(+)$1	210	13	16	8.9999
3ee	chr17:27047468-27047719(+)$1	251	58	61	8.9999
>ii	chr11:17097271-17097515(-)$1	244	73	76	8.9999
ggg	chrX:20154138-20154359(-)$1	221	93	96	8.9999
===	chr11:122928726-122928972(-)$1	246	38	41	8.9999
::=	chr15:66793493-66793753(-)$1	260	23	26	8.9999
fff	chr12:6619570-6619809(+)$1	239	79	82	8.9999
:DD	chr11:17096098-17096346(-)$1	248	4	7	8.9999
eee	chr2:203157698-203157926(+)$1	228	103	106	8.9999
qqq	chr9:136216194-136216426(+)$1	232	138	141	8.9999
eee	chr9:139621124-139621367(-)$1	243	42	45	8.9999
ddd	chr7:98479336-98479603(+)$1	267	128	131	8.9999
ccc	chr19:893461-893690(+)$1	229	83	86	8.9999
EEE	chr9:136217601-136217883(+)$1	282	31	34	8.9999
:::	chr9:136216142-136216394(+)$1	252	50	53	8.9999
"""	chr20:26190056-26190358(-)$1	302	13	16	8.9999
QQQ	chr11:122929521-122929760(-)$1	239	122	125	8.9999
###	chr13:92001189-92001430(+)$1	241	46	49	8.9999
ggg	chr15:66794259-66794527(-)$1	268	37	40	8.9999
777	chrX:135961250-135961486(-)$1	236	108	111	8.9999
bbs	chr1:28905164-28905423(-)$1	259	106	109	8.9999
::g	chr2:232321054-232321285(-)$1	231	25	28	8.9999
:::	chr17:74557628-74557883(+)$1	255	40	43	8.9999
JJJ	chr17:19091317-19091541(+)$1	224	113	116	8.9999
fff	chr4:83816903-83817166(-)$1	263	216	219	8.9999
"""	chr7:98479274-98479513(+)$1	239	24	27	8.9999
vvv	chr17:80051553-80051788(-)$1	235	26	29	8.9999
c%%	chr17:74557083-74557364(+)$1	281	134	137	8.9999
cc$	chr10:70514825-70515097(+)$1	272	123	126	8.9999
pcc	chr2:133015120-133015366(-)$1	246	24	27	8.9999
Dcc	chr17:74554771-74555056(+)$1	285	21	24	8.9999
:EE	chr1:109642808-109643021(+)$1	213	26	29	8.9999
BKK	chr4:1239034-1239325(-)$1	291	17	20	8.9999
ggg	chrX:20154159-20154409(-)$1	250	143	146	8.9999
fff	chr11:62622002-62622223(-)$1	221	29	32	8.9999
MMM	chr17:27050597-27050866(+)$1	269	28	31	8.9999
ddr	chr19:3982413-3982654(-)$1	241	10	13	8.9999
ee!	chr4:53578777-53579004(+)$1	227	29	32	8.9999
ggg	chr18:47015522-47015781(-)$1	259	17	20	8.9999
JJJ	chr12:6619516-6619761(+)$1	245	14	17	8.9999
ee4	chr3:160232628-160232891(-)$1	263	131	134	8.9999
ell	chr20:2637214-2637441(+)$1	227	93	96	8.9999
bbg	chr6:133136369-133136604(+)$1	235	107	110	8.9999
ccc	chr2:203141063-203141332(+)$1	269	51	54	8.9999
JJJ	chr17:19093316-19093583(-)$1	267	127	130	8.9999
mii	chr19:50000888-50001151(+)$1	263	30	33	8.9999
CCC	chr2:203155962-203156248(+)$1	286	43	46	8.9999
bb2	chr11:122928707-122928926(-)$1	219	120	123	8.9999
hhh	chr8:142139000-142139245(+)$1	245	52	55	8.9999
mme	chr11:122929985-122930224(-)$1	239	16	19	8.9999
ddd	chr17:19091313-19091517(+)$1	204	117	120	8.9999
ddd	chr16:1426158-1426406(-)$1	248	21	24	8.9999
ggg	chr9:136216856-136217107(+)$1	251	35	38	8.9999
rrr	chr19:1408179-1408466(+)$1	287	40	43	8.9999
bbm	chr3:186502507-186502735(+)$1	228	43	46	8.9999
dd[	chr10:101996745-101996999(-)$1	254	54	57	8.9999
fff	chr14:105933354-105933611(+)$1	257	36	39	8.9999
eee	chr2:97559874-97560144(-)$1	270	7	10	8.9999
qqq	chr14:76070448-76070691(+)$1	243	15	18	8.9999
fff	chr22:22899783-22900056(-)$1	273	48	51	8.9999
EEL	chr19:12814314-12814586(-)$1	272	6	9	8.9999
ggg	chr11:93454806-93455053(+)$1	247	143	146	8.9999
ddd	chr4:1803739-1804021(+)$1	282	52	55	8.9999
ood	chr5:137896649-137896870(-)$1	221	141	144	8.9999
2gg	chr11:93454643-93454877(+)$1	234	115	118	8.9999
BB{	chr17:19091288-19091510(+)$1	222	12	15	8.9999
DDD	chr4:174253033-174253339(-)$1	306	1	4	8.9999
HHH	chr1:76253498-76253738(+)$1	240	155	158	8.9999

#DB
...	chr7:5569357-5569611(-)$1	1	4	7	8.9999
(((	chr3:128211693-128211976(+)$1	1	88	91	8.9999
...	chr1:109642780-109643000(+)$1	1	54	57	8.9999
.))	chr11:5275486-5275725(-)$1	1	32	35	8.9999
)))	chr11:65210937-65211206(+)$1	1	75	78	8.9999
...	chr17:27047519-27047735(+)$1	1	7	10	8.9999
(((	chr19:2271416-2271649(+)$1	1	10	13	8.9999
...	chr15:66795058-66795303(-)$1	1	103	106	8.9999
)))	chr1:228333670-228333930(+)$1	1	114	117	8.9999
(((	chr11:93454887-93455135(+)$1	1	62	65	8.9999
)))	chr2:159313512-159313832(+)$1	1	160	163	8.9999
(((	chr17:27050366-27050608(+)$1	1	5	8	8.9999
(((	chr5:138614414-138614638(+)$1	1	1	4	8.9999
((.	chr7:148580782-148581085(-)$1	1	8	11	8.9999
...	chr17:18965262-18965550(+)$1	1	64	67	8.9999
((.	chr20:26189972-26190251(-)$1	1	23	26	8.9999
((.	chr16:592325-592661(+)$1	1	55	58	8.9999
)))	chr7:22896127-22896407(+)$1	1	168	171	8.9999
...	chr7:1492783-1493046(-)$1	1	1	4	8.9999
(((	chr1:205718999-205719270(-)$1	1	9	12	8.9999
(((	chr11:75111337-75111658(+)$1	1	96	99	8.9999
.((	chr11:93454740-93454989(+)$1	1	18	21	8.9999
(..	chr1:109642837-109643053(+)$1	1	4	7	8.9999
(((	chr20:26189854-26190153(-)$1	1	3	6	8.9999
...	chr11:17096146-17096390(-)$1	1	14	17	8.9999
)).	chrX:135961286-135961534(-)$1	1	156	159	8.9999
(((	chr9:100777604-100777861(+)$1	1	1	4	8.9999
(((	chr7:98479313-98479529(+)$1	1	151	154	8.9999
(((	chr12:104341341-104341592(+)$1	1	3	6	8.9999
(((	chr9:100777578-100777803(+)$1	1	27	30	8.9999
(..	chr14:102548650-102548879(-)$1	1	73	76	8.9999
((.	chr1:109642821-109643031(+)$1	1	13	16	8.9999
.))	chr17:27047468-27047719(+)$1	1	58	61	8.9999
.))	chr11:17097271-17097515(-)$1	1	73	76	8.9999
)))	chrX:20154138-20154359(-)$1	1	93	96	8.9999
(((	chr11:122928726-122928972(-)$1	1	38	41	8.9999
..(	chr15:66793493-66793753(-)$1	1	23	26	8.9999
)))	chr12:6619570-6619809(+)$1	1	79	82	8.9999
.((	chr11:17096098-17096346(-)$1	1	4	7	8.9999
(((	chr2:203157698-203157926(+)$1	1	103	106	8.9999
...	chr9:136216194-136216426(+)$1	1	138	141	8.9999
(((	chr9:139621124-139621367(-)$1	1	42	45	8.9999
(((	chr7:98479336-98479603(+)$1	1	128	131	8.9999
(((	chr19:893461-893690(+)$1	1	83	86	8.9999
(((	chr9:136217601-136217883(+)$1	1	31	34	8.9999
...	chr9:136216142-136216394(+)$1	1	50	53	8.9999
...	chr20:26190056-26190358(-)$1	1	13	16	8.9999
...	chr11:122929521-122929760(-)$1	1	122	125	8.9999
...	chr13:92001189-92001430(+)$1	1	46	49	8.9999
)))	chr15:66794259-66794527(-)$1	1	37	40	8.9999
...	chrX:135961250-135961486(-)$1	1	108	111	8.9999
((.	chr1:28905164-28905423(-)$1	1	106	109	8.9999
..(	chr2:232321054-232321285(-)$1	1	25	28	8.9999
...	chr17:74557628-74557883(+)$1	1	40	43	8.9999
(((	chr17:19091317-19091541(+)$1	1	113	116	8.9999
(((	chr4:83816903-83817166(-)$1	1	216	219	8.9999
...	chr7:98479274-98479513(+)$1	1	24	27	8.9999
...	chr17:80051553-80051788(-)$1	1	26	29	8.9999
(..	chr17:74557083-74557364(+)$1	1	134	137	8.9999
((.	chr10:70514825-70515097(+)$1	1	123	126	8.9999
.))	chr2:133015120-133015366(-)$1	1	24	27	8.9999
(((	chr17:74554771-74555056(+)$1	1	21	24	8.9999
.((	chr1:109642808-109643021(+)$1	1	26	29	8.9999
(..	chr4:1239034-1239325(-)$1	1	17	20	8.9999
)))	chrX:20154159-20154409(-)$1	1	143	146	8.9999
)))	chr11:62622002-62622223(-)$1	1	29	32	8.9999
...	chr17:27050597-27050866(+)$1	1	28	31	8.9999
((.	chr19:3982413-3982654(-)$1	1	10	13	8.9999
((.	chr4:53578777-53579004(+)$1	1	29	32	8.9999
)))	chr18:47015522-47015781(-)$1	1	17	20	8.9999
(((	chr12:6619516-6619761(+)$1	1	14	17	8.9999
)).	chr3:160232628-160232891(-)$1	1	131	134	8.9999
(..	chr20:2637214-2637441(+)$1	1	93	96	8.9999
))(	chr6:133136369-133136604(+)$1	1	107	110	8.9999
)))	chr2:203141063-203141332(+)$1	1	51	54	8.9999
(((	chr17:19093316-19093583(-)$1	1	127	130	8.9999
.))	chr19:50000888-50001151(+)$1	1	30	33	8.9999
(((	chr2:203155962-203156248(+)$1	1	43	46	8.9999
)).	chr11:122928707-122928926(-)$1	1	120	123	8.9999
(((	chr8:142139000-142139245(+)$1	1	52	55	8.9999
..)	chr11:122929985-122930224(-)$1	1	16	19	8.9999
)))	chr17:19091313-19091517(+)$1	1	117	120	8.9999
(((	chr16:1426158-1426406(-)$1	1	21	24	8.9999
(((	chr9:136216856-136217107(+)$1	1	35	38	8.9999
...	chr19:1408179-1408466(+)$1	1	40	43	8.9999
((.	chr3:186502507-186502735(+)$1	1	43	46	8.9999
((.	chr10:101996745-101996999(-)$1	1	54	57	8.9999
(((	chr14:105933354-105933611(+)$1	1	36	39	8.9999
(((	chr2:97559874-97560144(-)$1	1	7	10	8.9999
...	chr14:76070448-76070691(+)$1	1	15	18	8.9999
(((	chr22:22899783-22900056(-)$1	1	48	51	8.9999
((.	chr19:12814314-12814586(-)$1	1	6	9	8.9999
(((	chr11:93454806-93455053(+)$1	1	143	146	8.9999
(((	chr4:1803739-1804021(+)$1	1	52	55	8.9999
..)	chr5:137896649-137896870(-)$1	1	141	144	8.9999
.))	chr11:93454643-93454877(+)$1	1	115	118	8.9999
((.	chr17:19091288-19091510(+)$1	1	12	15	8.9999
(((	chr4:174253033-174253339(-)$1	1	1	4	8.9999
)))	chr1:76253498-76253738(+)$1	1	155	158	8.9999

#PSSM
C : 0.87	c : 0.12	
C : 0.87	c : 0.12	
U : 0.88	u : 0.11	

#score	890.9999999999998
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_transcript_m1_run2.nuc.txt

#NT
CUGUAAAUA	chr12:14656534-14656815(-)$1	281	135	144	20.6440
uugugaaua	chr6:7288261-7288504(-)$1	243	85	94	16.4915
GUGUAAAUA	chr15:41774328-41774594(+)$1	266	134	143	20.0508
UUGUAUAUA	chr16:3776559-3776832(-)$1	273	131	140	18.8644
UUGUAAAAA	chr6:20493518-20493793(+)$1	275	165	174	16.9152
UUGUGAAUA	chr2:24194083-24194385(+)$1	302	116	125	16.4915
UUGUAAAUA	chr15:42060575-42060850(+)$1	275	114	123	20.9830
CUGUAAAUA	chrX:67945233-67945501(+)$1	268	144	153	20.6440
UUGUAUAUA	chr6:89794102-89794380(+)$1	278	82	91	18.8644
AUGUACAUA	chr13:99446004-99446295(-)$1	291	96	105	18.3559
AUGUAAAUA	chr5:141692439-141692712(-)$1	273	154	163	20.4745
GUGUAAAUA	chr17:7138385-7138646(-)$1	261	30	39	20.0508
CUGUACAUA	chr19:21628716-21628977(-)$1	261	121	130	18.5254
UUGUAAAUA	chr8:37720023-37720246(-)$1	223	68	77	20.9830
CUGUACAUA	chr19:10596727-10596954(-)$1	227	39	48	18.5254
AUGUACAUA	chr1:111489736-111490011(-)$1	275	117	126	18.3559
AUGUAUAUA	chr14:93706762-93707045(-)$1	283	140	149	18.3559
CUGUAAAUA	chr22:47075373-47075661(+)$1	288	133	142	20.6440
CUGUAAAUA	chr20:5095683-5095908(-)$1	225	105	114	20.6440
AUGUAAAUA	chr12:25362485-25362757(-)$1	272	23	32	20.4745
GUGUAAAUA	chr4:146057677-146057908(-)$1	231	87	96	20.0508
AUGUAAAAA	chr8:103662186-103662432(-)$1	246	129	138	16.4067
CUGUAAAUA	chr11:61919557-61919822(+)$1	265	146	155	20.6440
CUGUAAAUA	chr20:5095655-5095883(-)$1	228	80	89	20.6440
GUGUACAUA	chr10:81075449-81075699(+)$1	250	71	80	17.9322
UUGUACAUA	chrX:3522330-3522598(-)$1	268	90	99	18.8644
CUGUACAUA	chr4:187509041-187509299(-)$1	258	100	109	18.5254
AUGUAUAUA	chr5:96369781-96370020(+)$1	239	140	149	18.3559
UUGUAUAUA	chr12:65640581-65640832(+)$1	251	93	102	18.8644
UUGUAAAGA	chr14:39651082-39651333(+)$1	251	56	65	16.5762
AUGUAAAUA	chr1:31342566-31342815(-)$1	249	93	102	20.4745
GUGUAAAUA	chr16:337475-337697(-)$1	222	121	130	20.0508
AUGUAAAUA	chr21:16334072-16334316(-)$1	244	42	51	20.4745
UUGUGAAUA	chr2:47600510-47600800(+)$1	290	130	139	16.4915
UUGUAAAUA	chr17:48772593-48772860(-)$1	267	107	116	20.9830
AUGUAAAAA	chr11:9467430-9467670(+)$1	240	100	109	16.4067
UUGUAAAUA	chr12:22840262-22840484(+)$1	222	104	113	20.9830
CUGUAAAAA	chr3:128198265-128198502(-)$1	237	158	167	16.5762
AUGUAAAUA	chr8:94745360-94745617(-)$1	257	116	125	20.4745
CUGUAAAUA	chr9:114981019-114981255(-)$1	236	122	131	20.6440
AUGUACAUA	chr2:234380531-234380819(+)$1	288	135	144	18.3559
GUGUAUAUA	chrX:123044039-123044278(+)$1	239	98	107	17.9322
UUGUAUAUA	chr1:150596084-150596345(-)$1	261	78	87	18.8644
CUGUAUAUA	chr10:81143282-81143554(-)$1	272	128	137	18.5254
UUGUAAAUA	chr4:185548795-185549105(-)$1	310	141	150	20.9830
CUGUAAAUA	chr11:118621937-118622160(-)$1	223	61	70	20.6440
UUGUACAUA	chr11:46765370-46765587(-)$1	217	167	176	18.8644
GUGUAAAUA	chr7:6729942-6730213(-)$1	271	169	178	20.0508
UUGUAUAUA	chr6:125410497-125410745(+)$1	248	91	100	18.8644
GUGUAAAUA	chr3:138373729-138374029(-)$1	300	123	132	20.0508
UUGUAAAUA	chr10:91533792-91534036(+)$1	244	76	85	20.9830
CUGUAAAUA	chr12:110788673-110788951(+)$1	278	131	140	20.6440
UUGUAGAUA	chr10:22032358-22032601(+)$1	243	19	28	18.0169
UUGUACAUA	chr1:150479414-150479695(+)$1	281	130	139	18.8644
CUGUACAUA	chr16:30995816-30996058(+)$1	242	98	107	18.5254
AUGUAUAUA	chr1:193056121-193056380(+)$1	259	109	118	18.3559
CUGUAAAUA	chr13:111956197-111956432(+)$1	235	123	132	20.6440
GUGUAUAUA	chr3:15084693-15085045(+)$1	352	171	180	17.9322

#otherMatches

#Struct PSSM
3dddd22cc	chr14:31204719-31205029(+)$1	310	140	149	16.4067
"cccyyyyy	chr12:14656534-14656815(-)$1	281	135	144	20.6440
eee]fffff	chr6:7288261-7288504(-)$1	243	85	94	16.4915
ddd777777	chr15:41774328-41774594(+)$1	266	134	143	20.0508
d[bb[gggg	chr16:3776559-3776832(-)$1	273	131	140	18.8644
ddmmmmddd	chr6:20493518-20493793(+)$1	275	165	174	16.9152
yyyyyyyyy	chr2:24194083-24194385(+)$1	302	116	125	16.4915
ccc]dddd2	chr15:42060575-42060850(+)$1	275	114	123	20.9830
!!bbmmmmb	chrX:67945233-67945501(+)$1	268	144	153	20.6440
33hhhhhhh	chr6:89794102-89794380(+)$1	278	82	91	18.8644
ffffff:::	chr13:99446004-99446295(-)$1	291	96	105	18.3559
bbmmmmbb2	chr5:141692439-141692712(-)$1	273	154	163	20.4745
eeeeqqqqq	chr17:7138385-7138646(-)$1	261	30	39	20.0508
::eeeeedd	chr19:21628716-21628977(-)$1	261	121	130	18.5254
mccc:::::	chr8:37720023-37720246(-)$1	223	68	77	20.9830
444eeeee:	chr19:10596727-10596954(-)$1	227	39	48	18.5254
888888===	chr1:111489736-111490011(-)$1	275	117	126	18.3559
ffmmmmfff	chr14:93706762-93707045(-)$1	283	140	149	18.3559
"bbqqqqqq	chr22:47075373-47075661(+)$1	288	133	142	20.6440
nnnnfffff	chr20:5095683-5095908(-)$1	225	105	114	20.6440
sssssseee	chr12:25362485-25362757(-)$1	272	23	32	20.4745
eee]eeeee	chr4:146057677-146057908(-)$1	231	87	96	20.0508
b]ccc::::	chr8:103662186-103662432(-)$1	246	129	138	16.4067
fffff::::	chr11:61919557-61919822(+)$1	265	146	155	20.6440
ddd::::::	chr20:5095655-5095883(-)$1	228	80	89	20.6440
G:hhhhhhh	chr10:81075449-81075699(+)$1	250	71	80	17.9322
6666ccc33	chrX:3522330-3522598(-)$1	268	90	99	18.8644
qqqqqqqcc	chr4:187509041-187509299(-)$1	258	100	109	18.5254
sssssssdd	chr5:96369781-96370020(+)$1	239	140	149	18.3559
ggggggmmm	chr12:65640581-65640832(+)$1	251	93	102	18.8644
ee55555ee	chr14:39651082-39651333(+)$1	251	56	65	16.5762
:::::::::	chr1:31342566-31342815(-)$1	249	93	102	20.4745
dddd!!bb[	chr16:337475-337697(-)$1	222	121	130	20.0508
ccsssssss	chr21:16334072-16334316(-)$1	244	42	51	20.4745
eeeee]hhh	chr2:47600510-47600800(+)$1	290	130	139	16.4915
ggggg333e	chr17:48772593-48772860(-)$1	267	107	116	20.9830
eeeee"""e	chr11:9467430-9467670(+)$1	240	100	109	16.4067
ffrrrrrrr	chr12:22840262-22840484(+)$1	222	104	113	20.9830
ssssssssh	chr3:128198265-128198502(-)$1	237	158	167	16.5762
[dddd"""g	chr8:94745360-94745617(-)$1	257	116	125	20.4745
[cccttttt	chr9:114981019-114981255(-)$1	236	122	131	20.6440
ooeeeee:E	chr2:234380531-234380819(+)$1	288	135	144	18.3559
ggggg[===	chrX:123044039-123044278(+)$1	239	98	107	17.9322
####fffff	chr1:150596084-150596345(-)$1	261	78	87	18.8644
dddd:::::	chr10:81143282-81143554(-)$1	272	128	137	18.5254
::::hhhhh	chr4:185548795-185549105(-)$1	310	141	150	20.9830
fffff::::	chr11:118621937-118622160(-)$1	223	61	70	20.6440
ooooooeee	chr11:46765370-46765587(-)$1	217	167	176	18.8644
hhhh&&&&&	chr7:6729942-6730213(-)$1	271	169	178	20.0508
ggggggg33	chr6:125410497-125410745(+)$1	248	91	100	18.8644
ddd!!gggg	chr3:138373729-138374029(-)$1	300	123	132	20.0508
f[ccc%%%%	chr10:91533792-91534036(+)$1	244	76	85	20.9830
e:::::::f	chr12:110788673-110788951(+)$1	278	131	140	20.6440
dHHHHHHHH	chr10:22032358-22032601(+)$1	243	19	28	18.0169
etttttttt	chr1:150479414-150479695(+)$1	281	130	139	18.8644
bb:::::::	chr16:30995816-30996058(+)$1	242	98	107	18.5254
dddd[ccc[	chr1:193056121-193056380(+)$1	259	109	118	18.3559
qqccc:::H	chr13:111956197-111956432(+)$1	235	123	132	20.6440
gggggmmmm	chr3:15084693-15085045(+)$1	352	171	180	17.9322

#DB
.))))..))	chr14:31204719-31205029(+)$1	1	140	149	16.4067
.(((.....	chr12:14656534-14656815(-)$1	1	135	144	20.6440
))).)))))	chr6:7288261-7288504(-)$1	1	85	94	16.4915
)))......	chr15:41774328-41774594(+)$1	1	134	143	20.0508
(.((.((((	chr16:3776559-3776832(-)$1	1	131	140	18.8644
((....)))	chr6:20493518-20493793(+)$1	1	165	174	16.9152
.........	chr2:24194083-24194385(+)$1	1	116	125	16.4915
))).)))).	chr15:42060575-42060850(+)$1	1	114	123	20.9830
..((....)	chrX:67945233-67945501(+)$1	1	144	153	20.6440
..)))))))	chr6:89794102-89794380(+)$1	1	82	91	18.8644
))))))...	chr13:99446004-99446295(-)$1	1	96	105	18.3559
((....)).	chr5:141692439-141692712(-)$1	1	154	163	20.4745
((((.....	chr17:7138385-7138646(-)$1	1	30	39	20.0508
..(((((((	chr19:21628716-21628977(-)$1	1	121	130	18.5254
.))).....	chr8:37720023-37720246(-)$1	1	68	77	20.9830
...))))).	chr19:10596727-10596954(-)$1	1	39	48	18.5254
......)))	chr1:111489736-111490011(-)$1	1	117	126	18.3559
((....)))	chr14:93706762-93707045(-)$1	1	140	149	18.3559
.((......	chr22:47075373-47075661(+)$1	1	133	142	20.6440
....)))))	chr20:5095683-5095908(-)$1	1	105	114	20.6440
......)))	chr12:25362485-25362757(-)$1	1	23	32	20.4745
))).)))))	chr4:146057677-146057908(-)$1	1	87	96	20.0508
).)))....	chr8:103662186-103662432(-)$1	1	129	138	16.4067
)))))....	chr11:61919557-61919822(+)$1	1	146	155	20.6440
)))......	chr20:5095655-5095883(-)$1	1	80	89	20.6440
(.(((((((	chr10:81075449-81075699(+)$1	1	71	80	17.9322
....)))..	chrX:3522330-3522598(-)$1	1	90	99	18.8644
.......))	chr4:187509041-187509299(-)$1	1	100	109	18.5254
.......))	chr5:96369781-96370020(+)$1	1	140	149	18.3559
((((((...	chr12:65640581-65640832(+)$1	1	93	102	18.8644
)).....))	chr14:39651082-39651333(+)$1	1	56	65	16.5762
.........	chr1:31342566-31342815(-)$1	1	93	102	20.4745
((((..((.	chr16:337475-337697(-)$1	1	121	130	20.0508
((.......	chr21:16334072-16334316(-)$1	1	42	51	20.4745
))))).)))	chr2:47600510-47600800(+)$1	1	130	139	16.4915
)))))...)	chr17:48772593-48772860(-)$1	1	107	116	20.9830
(((((...(	chr11:9467430-9467670(+)$1	1	100	109	16.4067
((.......	chr12:22840262-22840484(+)$1	1	104	113	20.9830
........)	chr3:128198265-128198502(-)$1	1	158	167	16.5762
.((((...(	chr8:94745360-94745617(-)$1	1	116	125	20.4745
.(((.....	chr9:114981019-114981255(-)$1	1	122	131	20.6440
..))))).)	chr2:234380531-234380819(+)$1	1	135	144	18.3559
(((((.(((	chrX:123044039-123044278(+)$1	1	98	107	17.9322
....(((((	chr1:150596084-150596345(-)$1	1	78	87	18.8644
)))).....	chr10:81143282-81143554(-)$1	1	128	137	18.5254
....(((((	chr4:185548795-185549105(-)$1	1	141	150	20.9830
)))))....	chr11:118621937-118622160(-)$1	1	61	70	20.6440
......)))	chr11:46765370-46765587(-)$1	1	167	176	18.8644
((((.....	chr7:6729942-6730213(-)$1	1	169	178	20.0508
)))))))..	chr6:125410497-125410745(+)$1	1	91	100	18.8644
(((..((((	chr3:138373729-138374029(-)$1	1	123	132	20.0508
(.(((....	chr10:91533792-91534036(+)$1	1	76	85	20.9830
).......(	chr12:110788673-110788951(+)$1	1	131	140	20.6440
)((((((((	chr10:22032358-22032601(+)$1	1	19	28	18.0169
(........	chr1:150479414-150479695(+)$1	1	130	139	18.8644
)).......	chr16:30995816-30996058(+)$1	1	98	107	18.5254
((((.(((.	chr1:193056121-193056380(+)$1	1	109	118	18.3559
..)))...)	chr13:111956197-111956432(+)$1	1	123	132	20.6440
(((((....	chr3:15084693-15085045(+)$1	1	171	180	17.9322

#PSSM
U : 0.32	C : 0.27	A : 0.23	G : 0.15	u : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
U : 0.98	u : 0.01	
A : 0.94	G : 0.03	g : 0.01	
A : 0.59	U : 0.18	C : 0.18	a : 0.01	G : 0.01	
A : 0.98	a : 0.01	
U : 0.88	A : 0.08	u : 0.01	G : 0.01	
A : 0.98	a : 0.01	

#score	1129.2711864406763
#seq	59
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_transcript_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::JJJJJJJJJJ::::::::::::ddddoooooodddd::::::::::::::bbpppppppbb:::JJJJJJJJJJ:GGGGGGG{EEEEE{EEEEENNNNNDDDDO	chr12:105064431-105064881(+)$1	450	8	329	963.0000

#DB
.........................................................................................................................................................................................................................((((((((((............((((......))))..............((.......))...)))))))))).(((((((.(((((.(((((.....((((.	chr12:105064431-105064881(+)$1	1	8	329	963.0000

#PSSM
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	

#score	963.0
#seq	1
#width	321
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_CDS_m3_run2.nuc.txt

#NT
CAGGAAGAAG	chr8:101725216-101725432(-)$1	216	137	147	22.2727
gaggaggaag	chr11:67018063-67018383(+)$1	320	6	16	21.0606
gaggaagaag	chr9:100777553-100777784(+)$1	231	94	104	24.9999
GAGGAAGAGG	chr10:70098289-70098546(+)$1	257	74	84	21.0606
gaggaagaag	chr2:232576548-232576779(+)$1	231	99	109	24.9999
gaggaagaag	chr4:174253130-174253337(-)$1	207	56	66	24.9999
CAGGAAGAAG	chr8:101725235-101725444(-)$1	209	149	159	22.2727
GAGGACGAAG	chr9:100767314-100767534(+)$1	220	111	121	21.0606
GUGGAAUAAG	chr1:76254755-76255051(+)$1	296	224	234	16.5151
GAGGAAGAAG	chr6:99853816-99854146(-)$1	330	111	121	24.9999
UAGGAAGAAG	chr9:100774605-100774854(+)$1	249	94	104	21.9696
gaggaagaag	chr9:100777545-100777748(+)$1	203	102	112	24.9999
GAGGAAGAAG	chr2:232325278-232325482(-)$1	204	81	91	24.9999
gaggaagaag	chr14:73577441-73577794(+)$1	353	160	170	24.9999
AAGCAAGAAG	chr11:32610037-32610331(+)$1	294	158	168	17.4242
CAGAAAGAAG	chr3:47747851-47748123(-)$1	272	116	126	18.0303
gaggaagaag	chr9:100777584-100777802(+)$1	218	63	73	24.9999
GAGGCAGGAG	chr3:183898841-183899107(+)$1	266	179	189	15.9090
GAGGAAGAGG	chr3:197562407-197562698(+)$1	291	184	194	21.0606
GAGGUAGAAG	chr2:232327809-232328091(-)$1	282	112	122	20.6060
GAAGAAGAAG	chr19:17313647-17313987(+)$1	340	17	27	20.4545
aaggaagaag	chr11:35684886-35685296(+)$1	410	4	14	21.8181
GAGGAUGAAG	chr11:5443278-5443570(-)$1	292	92	102	20.9090
GAGGAAGAGG	chr2:232577058-232577322(+)$1	264	96	106	21.0606
UUGGGAGAAG	chr1:76260182-76260467(+)$1	285	57	67	13.7878
GUUGAAGAAG	chr6:42994712-42994971(+)$1	259	217	227	16.6666
CAGGAAGAAG	chr8:101725244-101725477(-)$1	233	182	192	22.2727
GAGGACGAAG	chr3:157820556-157820842(-)$1	286	211	221	21.0606
gaggaagaag	chr9:100777602-100777854(+)$1	252	45	55	24.9999
CAGGAAGAAG	chr8:101725214-101725416(-)$1	202	121	131	22.2727
GAGAAGGAAG	chr6:43521098-43521375(-)$1	277	156	166	16.8181
gaggaagacg	chr9:100773452-100773705(+)$1	253	111	121	20.7575

#otherMatches

#Struct PSSM
eeee::ffff	chr2:188349430-188349712(-)$1	282	18	28	18.1818
ff!!dddd[a	chr8:101725216-101725432(-)$1	216	137	147	22.2727
::::::::::	chr11:67018063-67018383(+)$1	320	6	16	21.0606
g22bb333cc	chr9:100777553-100777784(+)$1	231	94	104	24.9999
vvvvvvvvbb	chr10:70098289-70098546(+)$1	257	74	84	21.0606
"iiiiiiiii	chr2:232576548-232576779(+)$1	231	99	109	24.9999
:::::::::D	chr4:174253130-174253337(-)$1	207	56	66	24.9999
ff!!dddd[a	chr8:101725235-101725444(-)$1	209	149	159	22.2727
e$$$$$eeee	chr9:100767314-100767534(+)$1	220	111	121	21.0606
ffff======	chr1:76254755-76255051(+)$1	296	224	234	16.5151
[ccc''''''	chr6:99853816-99854146(-)$1	330	111	121	24.9999
gg!!cccttt	chr9:100774605-100774854(+)$1	249	94	104	21.9696
g22bb333cc	chr9:100777545-100777748(+)$1	203	102	112	24.9999
!!a!!dddd%	chr2:232325278-232325482(-)$1	204	81	91	24.9999
eee+++++++	chr14:73577441-73577794(+)$1	353	160	170	24.9999
555eeeee:e	chr11:32610037-32610331(+)$1	294	158	168	17.4242
]bb]ffffff	chr3:47747851-47748123(-)$1	272	116	126	18.0303
g22bb333cc	chr9:100777584-100777802(+)$1	218	63	73	24.9999
::DDDD____	chr3:183898841-183899107(+)$1	266	179	189	15.9090
]aiiiiiiii	chr3:197562407-197562698(+)$1	291	184	194	21.0606
ffff]bb:::	chr2:232327809-232328091(-)$1	282	112	122	20.6060
:::::::::b	chr19:17313647-17313987(+)$1	340	17	27	20.4545
:::::CCCLL	chr11:35684886-35685296(+)$1	410	4	14	21.8181
"ccc[ccc##	chr11:5443278-5443570(-)$1	292	92	102	20.9090
wwwwwwwwww	chr2:232577058-232577322(+)$1	264	96	106	21.0606
G::a[fffff	chr1:76260182-76260467(+)$1	285	57	67	13.7878
obb22a]ddd	chr6:42994712-42994971(+)$1	259	217	227	16.6666
gg!!dddd[a	chr8:101725244-101725477(-)$1	233	182	192	22.2727
c]dddd:::E	chr3:157820556-157820842(-)$1	286	211	221	21.0606
eeee:::::F	chr9:100777602-100777854(+)$1	252	45	55	24.9999
ff!!dddd[a	chr8:101725214-101725416(-)$1	202	121	131	22.2727
eeee[ddddp	chr6:43521098-43521375(-)$1	277	156	166	16.8181
^^^^^^^^^^	chr9:100773452-100773705(+)$1	253	111	121	20.7575

#DB
))))..((((	chr2:188349430-188349712(-)$1	1	18	28	18.1818
((..((((.(	chr8:101725216-101725432(-)$1	1	137	147	22.2727
..........	chr11:67018063-67018383(+)$1	1	6	16	21.0606
)..))...))	chr9:100777553-100777784(+)$1	1	94	104	24.9999
........))	chr10:70098289-70098546(+)$1	1	74	84	21.0606
.(((((((((	chr2:232576548-232576779(+)$1	1	99	109	24.9999
.........(	chr4:174253130-174253337(-)$1	1	56	66	24.9999
((..((((.(	chr8:101725235-101725444(-)$1	1	149	159	22.2727
(.....((((	chr9:100767314-100767534(+)$1	1	111	121	21.0606
))))))))))	chr1:76254755-76255051(+)$1	1	224	234	16.5151
.(((......	chr6:99853816-99854146(-)$1	1	111	121	24.9999
((..(((...	chr9:100774605-100774854(+)$1	1	94	104	21.9696
)..))...))	chr9:100777545-100777748(+)$1	1	102	112	24.9999
..(..((((.	chr2:232325278-232325482(-)$1	1	81	91	24.9999
(((.......	chr14:73577441-73577794(+)$1	1	160	170	24.9999
...))))).(	chr11:32610037-32610331(+)$1	1	158	168	17.4242
.)).))))))	chr3:47747851-47748123(-)$1	1	116	126	18.0303
)..))...))	chr9:100777584-100777802(+)$1	1	63	73	24.9999
..))))....	chr3:183898841-183899107(+)$1	1	179	189	15.9090
.)))))))))	chr3:197562407-197562698(+)$1	1	184	194	21.0606
)))).))...	chr2:232327809-232328091(-)$1	1	112	122	20.6060
.........(	chr19:17313647-17313987(+)$1	1	17	27	20.4545
.....(((..	chr11:35684886-35685296(+)$1	1	4	14	21.8181
.(((.(((..	chr11:5443278-5443570(-)$1	1	92	102	20.9090
..........	chr2:232577058-232577322(+)$1	1	96	106	21.0606
(..(.(((((	chr1:76260182-76260467(+)$1	1	57	67	13.7878
.))..).)))	chr6:42994712-42994971(+)$1	1	217	227	16.6666
((..((((.(	chr8:101725244-101725477(-)$1	1	182	192	22.2727
).))))...)	chr3:157820556-157820842(-)$1	1	211	221	21.0606
)))).....(	chr9:100777602-100777854(+)$1	1	45	55	24.9999
((..((((.(	chr8:101725214-101725416(-)$1	1	121	131	22.2727
((((.((((.	chr6:43521098-43521375(-)$1	1	156	166	16.8181
..........	chr9:100773452-100773705(+)$1	1	111	121	20.7575

#PSSM
G : 0.42	g : 0.27	C : 0.15	U : 0.09	A : 0.03	a : 0.03	
A : 0.57	a : 0.30	U : 0.12	
G : 0.63	g : 0.30	A : 0.03	U : 0.03	
G : 0.60	g : 0.30	A : 0.06	C : 0.03	
A : 0.60	a : 0.30	C : 0.03	U : 0.03	G : 0.03	
A : 0.57	a : 0.27	C : 0.06	g : 0.03	U : 0.03	G : 0.03	
G : 0.66	g : 0.30	U : 0.03	
A : 0.66	a : 0.30	G : 0.03	
A : 0.60	a : 0.27	G : 0.09	c : 0.03	
G : 0.69	g : 0.30	

#score	700.3030303030297
#seq	33
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_transcript_m2_run1.nuc.txt

#NT
cauccaugcacucacaca	chr12:124842282-124842538(-)$1	256	39	57	29.7758
CACCUAGACAGACACACA	chr1:31367613-31367900(-)$1	287	232	250	27.1896
CAUGCAUGCAGACACACA	chr13:114561027-114561241(-)$1	214	36	54	29.4310
cacgcauacacacacaca	chr7:784970-785247(+)$1	277	87	105	37.3620
GUCCCAUGcacacacaca	chr22:48043061-48043319(+)$1	258	45	63	28.7413
cacacauacacacacaca	chr3:176747801-176748016(-)$1	215	116	134	40.5517
cacacguccacacacaca	chr2:3467803-3468109(+)$1	306	98	116	34.4310
cacacacacacacacaca	chr1:224637706-224637942(+)$1	236	0	18	38.5689
cacacaugcacacaaaca	chr18:75696785-75696995(-)$1	210	91	109	35.5517
cacagauacauaaacaca	chr13:111636437-111636696(+)$1	259	7	25	28.4827
cacacaugcacagacacc	chr22:50437385-50437714(-)$1	329	310	328	31.0689
cauacaaacacacacaca	chr19:4036315-4036557(+)$1	242	117	135	33.9137
CACACAUACACACACACA	chr1:27886481-27886788(-)$1	307	163	181	40.5517
cacacguccauacacaca	chr16:11557380-11557691(-)$1	311	4	22	30.6379
cucucaugcacacccaca	chr6:158291123-158291353(+)$1	230	71	89	28.1379
CAAACAGGCACACACACA	chr18:75697049-75697271(-)$1	222	28	46	33.0517
CACACACACACACACAAA	chr3:6576300-6576539(+)$1	239	64	82	34.3448
CAUCCAUCUGcacacaca	chr22:48160635-48160851(+)$1	216	46	64	23.9137
cacccauaugcacacaca	chr22:47401800-47402124(+)$1	324	8	26	29.0862
cacacauacacacaccaa	chr19:1388870-1389152(+)$1	282	129	147	32.1034
cacccauccacacacaca	chr10:7419824-7420097(-)$1	273	90	108	36.1551
uaaacacacacacacaca	chr21:23609788-23610021(+)$1	233	60	78	30.3793
CACAGCcacacacacaca	chr2:10301606-10301959(+)$1	353	110	128	30.0344
CGCAGAUCCAGACACACA	chr1:33220036-33220296(+)$1	260	122	140	26.4999
cacacacacacacacaca	chr1:1453988-1454255(+)$1	267	59	77	38.5689
cacacacacacacacaca	chr7:148543952-148544175(-)$1	223	201	219	38.5689
cacaaaugcacccacaaa	chr18:75696948-75697159(-)$1	211	4	22	27.4482
cacacacacacacacaca	chr15:34602801-34603058(-)$1	257	130	148	38.5689
CACACAGGCACACACAGA	chr4:1218732-1218971(-)$1	239	35	53	32.6206
CUCACAUACACAUGCACA	chr10:80879880-80880259(+)$1	379	154	172	27.5344
cacacauacacaAACACU	chr2:132403286-132403545(+)$1	259	15	33	31.7586
cacucacacacacacaua	chr12:120288927-120289227(-)$1	300	139	157	30.9827
cacacacacacacacaca	chr14:100591421-100591668(+)$1	247	38	56	38.5689
aacacacacacacccaca	chr9:94601894-94602136(-)$1	242	157	175	29.8620
CACUCAUGCACAGACCCA	chr19:41192455-41192728(-)$1	273	62	80	28.1379
cauauauaCACACACACA	chr1:230411758-230412041(+)$1	283	147	165	33.2241
caugcaugcacacucaca	chr19:1389031-1389286(+)$1	255	11	29	28.8275
cacccauccacacacaca	chr10:7419725-7420024(-)$1	299	17	35	36.1551
cacacacccauacaaaca	chr15:88131661-88131914(-)$1	253	217	235	28.6551
cacacauacacacacaca	chr5:19086154-19086475(-)$1	321	131	149	40.5517
uacaaaugcauacacaca	chr16:81504933-81505157(+)$1	224	70	88	27.8793
cacauagacacacacaca	chr16:4719002-4719235(+)$1	233	1	19	33.7413
cauccauccacccaccca	chr22:49966292-49966538(-)$1	246	13	31	24.2586
CACGCAUGcacacacaca	chr7:1926856-1927173(-)$1	317	106	124	36.7586
cacacaugcacacacaCG	chr1:150528279-150528507(+)$1	228	68	86	35.3793
cacacaugcacauagaca	chr22:47555052-47555328(+)$1	276	254	272	31.1551
CUCCcauacacacacaca	chr2:112998419-112998723(-)$1	304	109	127	33.6551
cacacacacacucauaca	chr1:50995842-50996093(-)$1	251	110	128	30.1206
gacacaugcagacacaua	chr21:45731280-45731543(+)$1	263	33	51	27.4482
cacccaugcacgcacaca	chr2:97438595-97439017(+)$1	422	42	60	32.9655
CACACGUUCACUCACACU	chr7:158574474-158574763(-)$1	289	9	27	25.2931
cacauaugcacucacaca	chr6:158291012-158291284(+)$1	272	218	236	32.0172
cacacauacauacacaca	chr11:12176850-12177122(+)$1	272	243	261	36.7586
cacacauggacacaugca	chr22:50004438-50004681(-)$1	243	22	40	26.6724
cauacacacacaccccca	chr14:76961247-76961622(+)$1	375	248	266	26.5862
Uacacacacacacacaca	chr18:1035571-1035851(+)$1	280	110	128	34.3448
cacacauggacacacaca	chr21:46950140-46950394(-)$1	254	98	116	35.5517

#otherMatches

#Struct PSSM
Cffffffcccmmmmccc]	chr2:234752406-234752673(-)$1	267	147	165	29.1724
uuuuuuffffff333eee	chr12:124842282-124842538(-)$1	256	39	57	29.7758
c22dddd:::::::ffff	chr1:31367613-31367900(-)$1	287	232	250	27.1896
ccc]dddd>>>>>>>>>>	chr13:114561027-114561241(-)$1	214	36	54	29.4310
mmmbb:::::::::::::	chr7:784970-785247(+)$1	277	87	105	37.3620
::::ddddqqqqqqqqdd	chr22:48043061-48043319(+)$1	258	45	63	28.7413
iiiiii::::ddddoooo	chr3:176747801-176748016(-)$1	215	116	134	40.5517
^^^^^^^^^^^^^^^^^^	chr2:3467803-3468109(+)$1	306	98	116	34.4310
::::::::::::::::CC	chr1:224637706-224637942(+)$1	236	0	18	38.5689
ffmmmmffffff::::::	chr18:75696785-75696995(-)$1	210	91	109	35.5517
::::::::::::::::::	chr13:111636437-111636696(+)$1	259	7	25	28.4827
JJJJJJFFFFFFYYCCC:	chr22:50437385-50437714(-)$1	329	310	328	31.0689
]ccc::::::::::::::	chr19:4036315-4036557(+)$1	242	117	135	33.9137
::::::::::::::::::	chr1:27886481-27886788(-)$1	307	163	181	40.5517
::::::::::::::::::	chr16:11557380-11557691(-)$1	311	4	22	30.6379
eee]dddd::::::::::	chr6:158291123-158291353(+)$1	230	71	89	28.1379
qqqqqqccc]addddeee	chr18:75697049-75697271(-)$1	222	28	46	33.0517
::::::::::JJJJJJJJ	chr3:6576300-6576539(+)$1	239	64	82	34.3448
:::::::::eeeee%%%%	chr22:48160635-48160851(+)$1	216	46	64	23.9137
LCCC::::::::::::::	chr22:47401800-47402124(+)$1	324	8	26	29.0862
::::::::::cccooooo	chr19:1388870-1389152(+)$1	282	129	147	32.1034
::::::::::::::::::	chr10:7419824-7420097(-)$1	273	90	108	36.1551
JJ::::::::::::::::	chr21:23609788-23610021(+)$1	233	60	78	30.3793
????EEEEE:::::::::	chr2:10301606-10301959(+)$1	353	110	128	30.0344
[aa[ccc''''''''bb[	chr1:33220036-33220296(+)$1	260	122	140	26.4999
::::::::::::::::::	chr1:1453988-1454255(+)$1	267	59	77	38.5689
GG}BB:::::::::::::	chr7:148543952-148544175(-)$1	223	201	219	38.5689
::::::CCC:::::::::	chr18:75696948-75697159(-)$1	211	4	22	27.4482
:::::::::::::::::g	chr15:34602801-34603058(-)$1	257	130	148	38.5689
NNNNNDDDD::::bbppp	chr4:1218732-1218971(-)$1	239	35	53	32.6206
ssssssssssffffff::	chr10:80879880-80880259(+)$1	379	154	172	27.5344
::::::::::::::::cc	chr2:132403286-132403545(+)$1	259	15	33	31.7586
qqqqqqqqccc]eeeee:	chr12:120288927-120289227(-)$1	300	139	157	30.9827
::::::::::::::::::	chr14:100591421-100591668(+)$1	247	38	56	38.5689
::::::::::::::::::	chr9:94601894-94602136(-)$1	242	157	175	29.8620
iiiiiiii::cccrrrrr	chr19:41192455-41192728(-)$1	273	62	80	28.1379
22ffffff::::::::::	chr1:230411758-230412041(+)$1	283	147	165	33.2241
::FFFFFFSSSSSSSSSS	chr19:1389031-1389286(+)$1	255	11	29	28.8275
::::::::::::::::::	chr10:7419725-7420024(-)$1	299	17	35	36.1551
:::::::::::::fffff	chr15:88131661-88131914(-)$1	253	217	235	28.6551
66bb]ffffff:::::::	chr5:19086154-19086475(-)$1	321	131	149	40.5517
cc####eeeee!!cccoo	chr16:81504933-81505157(+)$1	224	70	88	27.8793
::::::::::::::::::	chr16:4719002-4719235(+)$1	233	1	19	33.7413
:::::::::::::CCCKK	chr22:49966292-49966538(-)$1	246	13	31	24.2586
"""eeeeessssssssss	chr7:1926856-1927173(-)$1	317	106	124	36.7586
ff::::dddd[bbmmmmb	chr1:150528279-150528507(+)$1	228	68	86	35.3793
d::FFFFFF:::::::::	chr22:47555052-47555328(+)$1	276	254	272	31.1551
ffff+++++++++++ccc	chr2:112998419-112998723(-)$1	304	109	127	33.6551
::::::::::::::::::	chr1:50995842-50996093(-)$1	251	110	128	30.1206
qqqqdddd::::::::::	chr21:45731280-45731543(+)$1	263	33	51	27.4482
:::EEEEELLLCCC::::	chr2:97438595-97439017(+)$1	422	42	60	32.9655
:::ccc"""bbqqqqqqq	chr7:158574474-158574763(-)$1	289	9	27	25.2931
++++++ddddqqqqqqqq	chr6:158291012-158291284(+)$1	272	218	236	32.0172
:::::::::::::::EEE	chr11:12176850-12177122(+)$1	272	243	261	36.7586
tttttdddd55555bb22	chr22:50004438-50004681(-)$1	243	22	40	26.6724
ogggggggccc####bbo	chr14:76961247-76961622(+)$1	375	248	266	26.5862
::::::::::::::::::	chr18:1035571-1035851(+)$1	280	110	128	34.3448
e55555dddd::::::::	chr21:46950140-46950394(-)$1	254	98	116	35.5517

#DB
((((((((((....))).	chr2:234752406-234752673(-)$1	1	147	165	29.1724
......))))))...)))	chr12:124842282-124842538(-)$1	1	39	57	29.7758
)..)))).......((((	chr1:31367613-31367900(-)$1	1	232	250	27.1896
))).))))..........	chr13:114561027-114561241(-)$1	1	36	54	29.4310
...)).............	chr7:784970-785247(+)$1	1	87	105	37.3620
....((((........))	chr22:48043061-48043319(+)$1	1	45	63	28.7413
))))))....((((....	chr3:176747801-176748016(-)$1	1	116	134	40.5517
..................	chr2:3467803-3468109(+)$1	1	98	116	34.4310
................((	chr1:224637706-224637942(+)$1	1	0	18	38.5689
((....))))))......	chr18:75696785-75696995(-)$1	1	91	109	35.5517
..................	chr13:111636437-111636696(+)$1	1	7	25	28.4827
))))))))))))..))).	chr22:50437385-50437714(-)$1	1	310	328	31.0689
.)))..............	chr19:4036315-4036557(+)$1	1	117	135	33.9137
..................	chr1:27886481-27886788(-)$1	1	163	181	40.5517
..................	chr16:11557380-11557691(-)$1	1	4	22	30.6379
))).))))..........	chr6:158291123-158291353(+)$1	1	71	89	28.1379
......))).)))))(((	chr18:75697049-75697271(-)$1	1	28	46	33.0517
..........((((((((	chr3:6576300-6576539(+)$1	1	64	82	34.3448
.........(((((....	chr22:48160635-48160851(+)$1	1	46	64	23.9137
.(((..............	chr22:47401800-47402124(+)$1	1	8	26	29.0862
..........(((.....	chr19:1388870-1389152(+)$1	1	129	147	32.1034
..................	chr10:7419824-7420097(-)$1	1	90	108	36.1551
((................	chr21:23609788-23610021(+)$1	1	60	78	30.3793
....))))).........	chr2:10301606-10301959(+)$1	1	110	128	30.0344
.((.(((........((.	chr1:33220036-33220296(+)$1	1	122	140	26.4999
..................	chr1:1453988-1454255(+)$1	1	59	77	38.5689
)).)).............	chr7:148543952-148544175(-)$1	1	201	219	38.5689
......(((.........	chr18:75696948-75697159(-)$1	1	4	22	27.4482
.................(	chr15:34602801-34603058(-)$1	1	130	148	38.5689
.....((((....((...	chr4:1218732-1218971(-)$1	1	35	53	32.6206
..........))))))..	chr10:80879880-80880259(+)$1	1	154	172	27.5344
................((	chr2:132403286-132403545(+)$1	1	15	33	31.7586
........))).))))).	chr12:120288927-120289227(-)$1	1	139	157	30.9827
..................	chr14:100591421-100591668(+)$1	1	38	56	38.5689
..................	chr9:94601894-94602136(-)$1	1	157	175	29.8620
))))))))..(((.....	chr19:41192455-41192728(-)$1	1	62	80	28.1379
..))))))..........	chr1:230411758-230412041(+)$1	1	147	165	33.2241
..((((((..........	chr19:1389031-1389286(+)$1	1	11	29	28.8275
..................	chr10:7419725-7420024(-)$1	1	17	35	36.1551
.............(((((	chr15:88131661-88131914(-)$1	1	217	235	28.6551
..)).)))))).......	chr5:19086154-19086475(-)$1	1	131	149	40.5517
((....(((((..(((..	chr16:81504933-81505157(+)$1	1	70	88	27.8793
..................	chr16:4719002-4719235(+)$1	1	1	19	33.7413
.............(((..	chr22:49966292-49966538(-)$1	1	13	31	24.2586
...(((((..........	chr7:1926856-1927173(-)$1	1	106	124	36.7586
))....((((.((....)	chr1:150528279-150528507(+)$1	1	68	86	35.3793
)..)))))).........	chr22:47555052-47555328(+)$1	1	254	272	31.1551
((((...........(((	chr2:112998419-112998723(-)$1	1	109	127	33.6551
..................	chr1:50995842-50996093(-)$1	1	110	128	30.1206
....))))..........	chr21:45731280-45731543(+)$1	1	33	51	27.4482
...(((((...(((....	chr2:97438595-97439017(+)$1	1	42	60	32.9655
...(((...((.......	chr7:158574474-158574763(-)$1	1	9	27	25.2931
......((((........	chr6:158291012-158291284(+)$1	1	218	236	32.0172
...............)))	chr11:12176850-12177122(+)$1	1	243	261	36.7586
.....)))).....))..	chr22:50004438-50004681(-)$1	1	22	40	26.6724
.)))))))(((....((.	chr14:76961247-76961622(+)$1	1	248	266	26.5862
..................	chr18:1035571-1035851(+)$1	1	110	128	34.3448
).....))))........	chr21:46950140-46950394(-)$1	1	98	116	35.5517

#PSSM
c : 0.65	C : 0.24	u : 0.03	G : 0.01	a : 0.01	g : 0.01	U : 0.01	
a : 0.72	A : 0.18	U : 0.05	u : 0.01	G : 0.01	
c : 0.62	C : 0.20	u : 0.10	U : 0.03	A : 0.01	a : 0.01	
a : 0.56	A : 0.13	c : 0.10	C : 0.06	G : 0.03	g : 0.03	u : 0.03	U : 0.01	
c : 0.65	C : 0.18	u : 0.05	G : 0.03	a : 0.03	U : 0.01	g : 0.01	
a : 0.72	A : 0.20	g : 0.03	C : 0.01	G : 0.01	
u : 0.49	c : 0.24	U : 0.15	G : 0.05	a : 0.01	C : 0.01	g : 0.01	
a : 0.41	g : 0.25	G : 0.10	c : 0.10	A : 0.06	C : 0.03	U : 0.01	
c : 0.72	C : 0.18	u : 0.03	g : 0.03	U : 0.01	
a : 0.75	A : 0.18	g : 0.03	G : 0.01	
c : 0.70	C : 0.13	u : 0.08	G : 0.05	g : 0.01	
a : 0.70	A : 0.17	u : 0.05	c : 0.03	g : 0.01	U : 0.01	
c : 0.74	C : 0.15	a : 0.01	g : 0.01	U : 0.01	A : 0.01	G : 0.01	u : 0.01	
a : 0.72	A : 0.18	c : 0.05	G : 0.01	u : 0.01	
c : 0.70	C : 0.20	a : 0.03	u : 0.03	g : 0.01	
a : 0.72	A : 0.18	c : 0.05	C : 0.01	g : 0.01	
c : 0.70	C : 0.18	a : 0.03	u : 0.03	A : 0.01	G : 0.01	
a : 0.75	A : 0.17	U : 0.03	c : 0.01	G : 0.01	

#score	1859.758620689654
#seq	58
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_transcript_m1_run2.nuc.txt

#NT
UCU	chr8:19709239-19709515(+)$1	276	10	13	8.9999
UCU	chr12:7074526-7074794(-)$1	268	85	88	8.9999
UCU	chr10:3178718-3179068(+)$1	350	48	51	8.9999
UCU	chr1:8921030-8921241(-)$1	211	16	19	8.9999
UCU	chr2:26512739-26512982(+)$1	243	19	22	8.9999
UCU	chr11:18428865-18429074(+)$1	209	9	12	8.9999
UCU	chr5:177637694-177637958(+)$1	264	22	25	8.9999
UCU	chr14:69847068-69847318(-)$1	250	20	23	8.9999
UCU	chr22:50039288-50039563(-)$1	275	79	82	8.9999
UCU	chr12:54676525-54676758(+)$1	233	50	53	8.9999
UCU	chr5:170837709-170837925(+)$1	216	187	190	8.9999
UCU	chr17:66528600-66528853(+)$1	253	3	6	8.9999
ucu	chr1:160259201-160259469(-)$1	268	63	66	8.9999
UCU	chr4:147110864-147111126(+)$1	262	12	15	8.9999
UCU	chr16:83845058-83845335(+)$1	277	80	83	8.9999
UCU	chr11:122932670-122932917(-)$1	247	19	22	8.9999
UCU	chr5:162871587-162871878(+)$1	291	27	30	8.9999
UCU	chr15:89790770-89791005(+)$1	235	49	52	8.9999
UCU	chr1:151234534-151234809(+)$1	275	29	32	8.9999
UCU	chr21:33040894-33041184(+)$1	290	15	18	8.9999
UCU	chr7:12373024-12373261(-)$1	237	86	89	8.9999
UCU	chr5:170837725-170837930(+)$1	205	171	174	8.9999
UCU	chr7:16745970-16746227(+)$1	257	5	8	8.9999
UCU	chr17:76219690-76219966(+)$1	276	42	45	8.9999
UCU	chr5:175816512-175816802(+)$1	290	74	77	8.9999
UCU	chr16:85838441-85838683(+)$1	242	15	18	8.9999
UCU	chr3:25760689-25760994(-)$1	305	96	99	8.9999
UCU	chr1:31206460-31206724(-)$1	264	101	104	8.9999
UCU	chr11:17097056-17097270(-)$1	214	27	30	8.9999
UCU	chr12:21788295-21788535(-)$1	240	69	72	8.9999
UCU	chr2:20232324-20232624(-)$1	300	74	77	8.9999
UCU	chr11:62530250-62530519(+)$1	269	34	37	8.9999
UCU	chr17:17150136-17150400(-)$1	264	28	31	8.9999
UCU	chr1:182352418-182352654(-)$1	236	57	60	8.9999
UCU	chr22:19918450-19918708(-)$1	258	69	72	8.9999
UCU	chr3:10168375-10168624(+)$1	249	100	103	8.9999
UCU	chr6:160200842-160201126(-)$1	284	23	26	8.9999
UCU	chr1:156108940-156109190(+)$1	250	84	87	8.9999
UCU	chr12:13127747-13128008(-)$1	261	5	8	8.9999
UCU	chrX:152966028-152966284(-)$1	256	34	37	8.9999
UCU	chr6:133091101-133091372(-)$1	271	81	84	8.9999
UCU	chr1:26227007-26227268(-)$1	261	3	6	8.9999
UCU	chr14:58701246-58701506(+)$1	260	138	141	8.9999
UCU	chr17:79477167-79477399(-)$1	232	12	15	8.9999
UCU	chr9:80944362-80944629(+)$1	267	17	20	8.9999
UCU	chr15:45365734-45365991(+)$1	257	5	8	8.9999
UCU	chr1:20978531-20978760(-)$1	229	2	5	8.9999
UCU	chr19:1272673-1272926(+)$1	253	152	155	8.9999
UCU	chr16:56448104-56448354(-)$1	250	80	83	8.9999
UCU	chr6:108532892-108533195(-)$1	303	41	44	8.9999
UCU	chr1:991126-991360(+)$1	234	16	19	8.9999
UCU	chr12:120565134-120565368(-)$1	234	34	37	8.9999
UCU	chr3:150260362-150260607(-)$1	245	16	19	8.9999
UCU	chr7:32526577-32526831(-)$1	254	33	36	8.9999
UCU	chr16:56448070-56448304(-)$1	234	30	33	8.9999
UCU	chr8:56985541-56985779(-)$1	238	53	56	8.9999
UCU	chr16:75661560-75661813(-)$1	253	12	15	8.9999
UCU	chr2:44209275-44209494(-)$1	219	29	32	8.9999
UCU	chr9:36211907-36212146(+)$1	239	27	30	8.9999
UCU	chr1:173457646-173457930(+)$1	284	30	33	8.9999
UCU	chr1:182856659-182856890(+)$1	231	27	30	8.9999
UCU	chr2:113420522-113420775(+)$1	253	20	23	8.9999
UCU	chr12:57881774-57882068(+)$1	294	267	270	8.9999
UCU	chr14:21464970-21465251(+)$1	281	12	15	8.9999
UCU	chr11:57510234-57510465(+)$1	231	34	37	8.9999
UCU	chr11:32608579-32608791(+)$1	212	5	8	8.9999
UCU	chr19:582881-583100(+)$1	219	18	21	8.9999
UCU	chr5:138665184-138665434(+)$1	250	5	8	8.9999
UCU	chr1:45976746-45977000(-)$1	254	53	56	8.9999
UCU	chr17:39847740-39847982(+)$1	242	189	192	8.9999
UCU	chr6:90353045-90353295(-)$1	250	58	61	8.9999
UCU	chr11:62432500-62432770(-)$1	270	222	225	8.9999
UCU	chr22:41368489-41368754(+)$1	265	12	15	8.9999
UCU	chr1:24021123-24021340(+)$1	217	17	20	8.9999
UCU	chr12:21788218-21788468(-)$1	250	2	5	8.9999
UCU	chr2:162267837-162268117(+)$1	280	117	120	8.9999
UCU	chr17:47490516-47490753(-)$1	237	48	51	8.9999
UCU	chr1:26227068-26227285(-)$1	217	10	13	8.9999
UCU	chr16:56878427-56878660(+)$1	233	6	9	8.9999
UCU	chr18:33048256-33048516(-)$1	260	25	28	8.9999
UCU	chr19:36641084-36641324(+)$1	240	105	108	8.9999
UCU	chr15:45009818-45010043(+)$1	225	25	28	8.9999
UCU	chr9:127998620-127998851(-)$1	231	60	63	8.9999
UCU	chr2:217070143-217070417(+)$1	274	7	10	8.9999
UCU	chr1:153640374-153640598(-)$1	224	48	51	8.9999
UCU	chr12:120635140-120635366(-)$1	226	14	17	8.9999
UCU	chr10:5807231-5807453(-)$1	222	7	10	8.9999
UCU	chr11:47640225-47640518(-)$1	293	3	6	8.9999
UCU	chr7:107560011-107560249(+)$1	238	7	10	8.9999
UCU	chr10:89514150-89514397(-)$1	247	0	3	8.9999
UCU	chr14:74946799-74947084(-)$1	285	6	9	8.9999
UCU	chr5:81573501-81573732(-)$1	231	189	192	8.9999
UCU	chr6:24785955-24786237(+)$1	282	39	42	8.9999
UCU	chr7:100276501-100276745(+)$1	244	142	145	8.9999
UCU	chr2:176044725-176044967(-)$1	242	7	10	8.9999
UCU	chr12:7074466-7074726(-)$1	260	17	20	8.9999
UCU	chr19:58905840-58906055(+)$1	215	14	17	8.9999
UCU	chr7:127732194-127732428(+)$1	234	48	51	8.9999

#otherMatches

#Struct PSSM
ccm	chr22:38879375-38879614(-)$1	239	2	5	8.9999
BB{	chr8:19709239-19709515(+)$1	276	10	13	8.9999
mmm	chr12:7074526-7074794(-)$1	268	85	88	8.9999
ggg	chr10:3178718-3179068(+)$1	350	48	51	8.9999
dd:	chr1:8921030-8921241(-)$1	211	16	19	8.9999
eee	chr2:26512739-26512982(+)$1	243	19	22	8.9999
eee	chr11:18428865-18429074(+)$1	209	9	12	8.9999
qqq	chr5:177637694-177637958(+)$1	264	22	25	8.9999
:::	chr14:69847068-69847318(-)$1	250	20	23	8.9999
444	chr22:50039288-50039563(-)$1	275	79	82	8.9999
ccc	chr12:54676525-54676758(+)$1	233	50	53	8.9999
hhh	chr5:170837709-170837925(+)$1	216	187	190	8.9999
:::	chr17:66528600-66528853(+)$1	253	3	6	8.9999
ggg	chr1:160259201-160259469(-)$1	268	63	66	8.9999
GGG	chr4:147110864-147111126(+)$1	262	12	15	8.9999
ccc	chr16:83845058-83845335(+)$1	277	80	83	8.9999
]cc	chr11:122932670-122932917(-)$1	247	19	22	8.9999
hhh	chr5:162871587-162871878(+)$1	291	27	30	8.9999
000	chr15:89790770-89791005(+)$1	235	49	52	8.9999
EEE	chr1:151234534-151234809(+)$1	275	29	32	8.9999
EEE	chr21:33040894-33041184(+)$1	290	15	18	8.9999
GGL	chr7:12373024-12373261(-)$1	237	86	89	8.9999
hhh	chr5:170837725-170837930(+)$1	205	171	174	8.9999
hhh	chr7:16745970-16746227(+)$1	257	5	8	8.9999
obb	chr17:76219690-76219966(+)$1	276	42	45	8.9999
fff	chr5:175816512-175816802(+)$1	290	74	77	8.9999
fff	chr16:85838441-85838683(+)$1	242	15	18	8.9999
eee	chr3:25760689-25760994(-)$1	305	96	99	8.9999
(((	chr1:31206460-31206724(-)$1	264	101	104	8.9999
ddd	chr11:17097056-17097270(-)$1	214	27	30	8.9999
e!!	chr12:21788295-21788535(-)$1	240	69	72	8.9999
FFF	chr2:20232324-20232624(-)$1	300	74	77	8.9999
cc]	chr11:62530250-62530519(+)$1	269	34	37	8.9999
eee	chr17:17150136-17150400(-)$1	264	28	31	8.9999
EEE	chr1:182352418-182352654(-)$1	236	57	60	8.9999
FFF	chr22:19918450-19918708(-)$1	258	69	72	8.9999
E{C	chr3:10168375-10168624(+)$1	249	100	103	8.9999
[bb	chr6:160200842-160201126(-)$1	284	23	26	8.9999
hhh	chr1:156108940-156109190(+)$1	250	84	87	8.9999
DDD	chr12:13127747-13128008(-)$1	261	5	8	8.9999
DDD	chrX:152966028-152966284(-)$1	256	34	37	8.9999
gg!	chr6:133091101-133091372(-)$1	271	81	84	8.9999
:::	chr1:26227007-26227268(-)$1	261	3	6	8.9999
lll	chr14:58701246-58701506(+)$1	260	138	141	8.9999
www	chr17:79477167-79477399(-)$1	232	12	15	8.9999
=[f	chr9:80944362-80944629(+)$1	267	17	20	8.9999
lll	chr15:45365734-45365991(+)$1	257	5	8	8.9999
CC:	chr1:20978531-20978760(-)$1	229	2	5	8.9999
==:	chr19:1272673-1272926(+)$1	253	152	155	8.9999
fff	chr16:56448104-56448354(-)$1	250	80	83	8.9999
D::	chr6:108532892-108533195(-)$1	303	41	44	8.9999
D::	chr1:991126-991360(+)$1	234	16	19	8.9999
DD:	chr12:120565134-120565368(-)$1	234	34	37	8.9999
ssf	chr3:150260362-150260607(-)$1	245	16	19	8.9999
eee	chr7:32526577-32526831(-)$1	254	33	36	8.9999
::E	chr16:56448070-56448304(-)$1	234	30	33	8.9999
mmm	chr8:56985541-56985779(-)$1	238	53	56	8.9999
ddd	chr16:75661560-75661813(-)$1	253	12	15	8.9999
ccm	chr2:44209275-44209494(-)$1	219	29	32	8.9999
eee	chr9:36211907-36212146(+)$1	239	27	30	8.9999
ggg	chr1:173457646-173457930(+)$1	284	30	33	8.9999
lll	chr1:182856659-182856890(+)$1	231	27	30	8.9999
ggg	chr2:113420522-113420775(+)$1	253	20	23	8.9999
cce	chr12:57881774-57882068(+)$1	294	267	270	8.9999
BLL	chr14:21464970-21465251(+)$1	281	12	15	8.9999
oo=	chr11:57510234-57510465(+)$1	231	34	37	8.9999
ddd	chr11:32608579-32608791(+)$1	212	5	8	8.9999
HH:	chr19:582881-583100(+)$1	219	18	21	8.9999
KKD	chr5:138665184-138665434(+)$1	250	5	8	8.9999
cc:	chr1:45976746-45977000(-)$1	254	53	56	8.9999
:::	chr17:39847740-39847982(+)$1	242	189	192	8.9999
ccm	chr6:90353045-90353295(-)$1	250	58	61	8.9999
eee	chr11:62432500-62432770(-)$1	270	222	225	8.9999
LLG	chr22:41368489-41368754(+)$1	265	12	15	8.9999
fff	chr1:24021123-24021340(+)$1	217	17	20	8.9999
::G	chr12:21788218-21788468(-)$1	250	2	5	8.9999
bb[	chr2:162267837-162268117(+)$1	280	117	120	8.9999
hhh	chr17:47490516-47490753(-)$1	237	48	51	8.9999
CCC	chr1:26227068-26227285(-)$1	217	10	13	8.9999
WWW	chr16:56878427-56878660(+)$1	233	6	9	8.9999
DD:	chr18:33048256-33048516(-)$1	260	25	28	8.9999
ddd	chr19:36641084-36641324(+)$1	240	105	108	8.9999
GGG	chr15:45009818-45010043(+)$1	225	25	28	8.9999
dd]	chr9:127998620-127998851(-)$1	231	60	63	8.9999
:::	chr2:217070143-217070417(+)$1	274	7	10	8.9999
ddu	chr1:153640374-153640598(-)$1	224	48	51	8.9999
E::	chr12:120635140-120635366(-)$1	226	14	17	8.9999
ddd	chr10:5807231-5807453(-)$1	222	7	10	8.9999
KKD	chr11:47640225-47640518(-)$1	293	3	6	8.9999
fff	chr7:107560011-107560249(+)$1	238	7	10	8.9999
:::	chr10:89514150-89514397(-)$1	247	0	3	8.9999
KDD	chr14:74946799-74947084(-)$1	285	6	9	8.9999
ddd	chr5:81573501-81573732(-)$1	231	189	192	8.9999
ggg	chr6:24785955-24786237(+)$1	282	39	42	8.9999
iii	chr7:100276501-100276745(+)$1	244	142	145	8.9999
EEE	chr2:176044725-176044967(-)$1	242	7	10	8.9999
FFF	chr12:7074466-7074726(-)$1	260	17	20	8.9999
GGG	chr19:58905840-58906055(+)$1	215	14	17	8.9999
fff	chr7:127732194-127732428(+)$1	234	48	51	8.9999

#DB
((.	chr22:38879375-38879614(-)$1	1	2	5	8.9999
((.	chr8:19709239-19709515(+)$1	1	10	13	8.9999
...	chr12:7074526-7074794(-)$1	1	85	88	8.9999
)))	chr10:3178718-3179068(+)$1	1	48	51	8.9999
)).	chr1:8921030-8921241(-)$1	1	16	19	8.9999
(((	chr2:26512739-26512982(+)$1	1	19	22	8.9999
(((	chr11:18428865-18429074(+)$1	1	9	12	8.9999
...	chr5:177637694-177637958(+)$1	1	22	25	8.9999
...	chr14:69847068-69847318(-)$1	1	20	23	8.9999
...	chr22:50039288-50039563(-)$1	1	79	82	8.9999
(((	chr12:54676525-54676758(+)$1	1	50	53	8.9999
)))	chr5:170837709-170837925(+)$1	1	187	190	8.9999
...	chr17:66528600-66528853(+)$1	1	3	6	8.9999
)))	chr1:160259201-160259469(-)$1	1	63	66	8.9999
(((	chr4:147110864-147111126(+)$1	1	12	15	8.9999
)))	chr16:83845058-83845335(+)$1	1	80	83	8.9999
.))	chr11:122932670-122932917(-)$1	1	19	22	8.9999
(((	chr5:162871587-162871878(+)$1	1	27	30	8.9999
...	chr15:89790770-89791005(+)$1	1	49	52	8.9999
(((	chr1:151234534-151234809(+)$1	1	29	32	8.9999
(((	chr21:33040894-33041184(+)$1	1	15	18	8.9999
((.	chr7:12373024-12373261(-)$1	1	86	89	8.9999
)))	chr5:170837725-170837930(+)$1	1	171	174	8.9999
(((	chr7:16745970-16746227(+)$1	1	5	8	8.9999
.))	chr17:76219690-76219966(+)$1	1	42	45	8.9999
(((	chr5:175816512-175816802(+)$1	1	74	77	8.9999
)))	chr16:85838441-85838683(+)$1	1	15	18	8.9999
)))	chr3:25760689-25760994(-)$1	1	96	99	8.9999
...	chr1:31206460-31206724(-)$1	1	101	104	8.9999
)))	chr11:17097056-17097270(-)$1	1	27	30	8.9999
(..	chr12:21788295-21788535(-)$1	1	69	72	8.9999
(((	chr2:20232324-20232624(-)$1	1	74	77	8.9999
)).	chr11:62530250-62530519(+)$1	1	34	37	8.9999
)))	chr17:17150136-17150400(-)$1	1	28	31	8.9999
(((	chr1:182352418-182352654(-)$1	1	57	60	8.9999
(((	chr22:19918450-19918708(-)$1	1	69	72	8.9999
(.(	chr3:10168375-10168624(+)$1	1	100	103	8.9999
.((	chr6:160200842-160201126(-)$1	1	23	26	8.9999
)))	chr1:156108940-156109190(+)$1	1	84	87	8.9999
(((	chr12:13127747-13128008(-)$1	1	5	8	8.9999
(((	chrX:152966028-152966284(-)$1	1	34	37	8.9999
((.	chr6:133091101-133091372(-)$1	1	81	84	8.9999
...	chr1:26227007-26227268(-)$1	1	3	6	8.9999
...	chr14:58701246-58701506(+)$1	1	138	141	8.9999
...	chr17:79477167-79477399(-)$1	1	12	15	8.9999
(.(	chr9:80944362-80944629(+)$1	1	17	20	8.9999
...	chr15:45365734-45365991(+)$1	1	5	8	8.9999
((.	chr1:20978531-20978760(-)$1	1	2	5	8.9999
)).	chr19:1272673-1272926(+)$1	1	152	155	8.9999
)))	chr16:56448104-56448354(-)$1	1	80	83	8.9999
(..	chr6:108532892-108533195(-)$1	1	41	44	8.9999
(..	chr1:991126-991360(+)$1	1	16	19	8.9999
((.	chr12:120565134-120565368(-)$1	1	34	37	8.9999
..)	chr3:150260362-150260607(-)$1	1	16	19	8.9999
)))	chr7:32526577-32526831(-)$1	1	33	36	8.9999
..(	chr16:56448070-56448304(-)$1	1	30	33	8.9999
...	chr8:56985541-56985779(-)$1	1	53	56	8.9999
(((	chr16:75661560-75661813(-)$1	1	12	15	8.9999
((.	chr2:44209275-44209494(-)$1	1	29	32	8.9999
(((	chr9:36211907-36212146(+)$1	1	27	30	8.9999
(((	chr1:173457646-173457930(+)$1	1	30	33	8.9999
...	chr1:182856659-182856890(+)$1	1	27	30	8.9999
(((	chr2:113420522-113420775(+)$1	1	20	23	8.9999
)))	chr12:57881774-57882068(+)$1	1	267	270	8.9999
(..	chr14:21464970-21465251(+)$1	1	12	15	8.9999
..)	chr11:57510234-57510465(+)$1	1	34	37	8.9999
(((	chr11:32608579-32608791(+)$1	1	5	8	8.9999
((.	chr19:582881-583100(+)$1	1	18	21	8.9999
..(	chr5:138665184-138665434(+)$1	1	5	8	8.9999
)).	chr1:45976746-45977000(-)$1	1	53	56	8.9999
...	chr17:39847740-39847982(+)$1	1	189	192	8.9999
((.	chr6:90353045-90353295(-)$1	1	58	61	8.9999
(((	chr11:62432500-62432770(-)$1	1	222	225	8.9999
..(	chr22:41368489-41368754(+)$1	1	12	15	8.9999
(((	chr1:24021123-24021340(+)$1	1	17	20	8.9999
..(	chr12:21788218-21788468(-)$1	1	2	5	8.9999
((.	chr2:162267837-162268117(+)$1	1	117	120	8.9999
)))	chr17:47490516-47490753(-)$1	1	48	51	8.9999
(((	chr1:26227068-26227285(-)$1	1	10	13	8.9999
...	chr16:56878427-56878660(+)$1	1	6	9	8.9999
((.	chr18:33048256-33048516(-)$1	1	25	28	8.9999
)))	chr19:36641084-36641324(+)$1	1	105	108	8.9999
(((	chr15:45009818-45010043(+)$1	1	25	28	8.9999
)).	chr9:127998620-127998851(-)$1	1	60	63	8.9999
...	chr2:217070143-217070417(+)$1	1	7	10	8.9999
((.	chr1:153640374-153640598(-)$1	1	48	51	8.9999
(..	chr12:120635140-120635366(-)$1	1	14	17	8.9999
(((	chr10:5807231-5807453(-)$1	1	7	10	8.9999
..(	chr11:47640225-47640518(-)$1	1	3	6	8.9999
(((	chr7:107560011-107560249(+)$1	1	7	10	8.9999
...	chr10:89514150-89514397(-)$1	1	0	3	8.9999
.((	chr14:74946799-74947084(-)$1	1	6	9	8.9999
)))	chr5:81573501-81573732(-)$1	1	189	192	8.9999
(((	chr6:24785955-24786237(+)$1	1	39	42	8.9999
)))	chr7:100276501-100276745(+)$1	1	142	145	8.9999
(((	chr2:176044725-176044967(-)$1	1	7	10	8.9999
(((	chr12:7074466-7074726(-)$1	1	17	20	8.9999
(((	chr19:58905840-58906055(+)$1	1	14	17	8.9999
(((	chr7:127732194-127732428(+)$1	1	48	51	8.9999

#PSSM
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_transcript_m3_run2.nuc.txt

#NT
GCUG	chr16:29816008-29816262(+)$1	254	24	28	11.9999
GCUG	chr19:54024502-54024758(+)$1	256	126	130	11.9999
GCUG	chr16:11945079-11945339(-)$1	260	59	63	11.9999
GCUG	chr11:62623136-62623376(-)$1	240	64	68	11.9999
GCUG	chr20:61846853-61847101(-)$1	248	203	207	11.9999
GCUG	chr4:39460321-39460585(-)$1	264	58	62	11.9999
gcug	chr14:23791027-23791290(+)$1	263	35	39	11.9999
GCUG	chr1:1289508-1289782(-)$1	274	54	58	11.9999
GCUG	chr11:822510-822752(+)$1	242	11	15	11.9999
GCUG	chr2:219267643-219267872(+)$1	229	182	186	11.9999
GCUG	chr19:59059987-59060219(+)$1	232	195	199	11.9999
GCUG	chr22:29196055-29196324(-)$1	269	30	34	11.9999
GCUG	chr19:45571284-45571545(+)$1	261	1	5	11.9999
GCUG	chr1:155288225-155288498(+)$1	273	144	148	11.9999
GCUG	chr1:44442124-44442392(+)$1	268	50	54	11.9999
GCUG	chr17:4685868-4686119(+)$1	251	244	248	11.9999
GCUG	chr2:219266335-219266545(+)$1	210	14	18	11.9999
GCUG	chrM:14157-14381(-)$1	224	15	19	11.9999
GCUG	chr7:100778996-100779213(+)$1	217	27	31	11.9999
GCUG	chr1:43212718-43212989(-)$1	271	75	79	11.9999
GCUG	chr17:80194097-80194356(+)$1	259	50	54	11.9999
GCUG	chr21:47571226-47571531(-)$1	305	118	122	11.9999
GCUG	chrM:14282-14501(-)$1	219	135	139	11.9999
GCUG	chr7:150777605-150777858(-)$1	253	111	115	11.9999
GCUG	chr9:139685915-139686186(+)$1	271	2	6	11.9999
GCUG	chr17:27074221-27074456(+)$1	235	119	123	11.9999
GCUG	chr16:72142227-72142502(+)$1	275	246	250	11.9999
GCUG	chr17:4686007-4686270(+)$1	263	105	109	11.9999
GCUG	chr5:172197443-172197688(-)$1	245	205	209	11.9999
GCUG	chr2:128180682-128180991(+)$1	309	20	24	11.9999
GCUG	chr9:135930323-135930613(+)$1	290	55	59	11.9999
GCUG	chr3:50311004-50311271(+)$1	267	20	24	11.9999
GCUG	chr5:175958297-175958551(-)$1	254	8	12	11.9999
GCUG	chr12:7023720-7023969(+)$1	249	181	185	11.9999
GCUG	chr20:56140101-56140341(+)$1	240	21	25	11.9999
GCUG	chr20:56138169-56138419(+)$1	250	20	24	11.9999
GCUG	chr1:156351927-156352197(+)$1	270	30	34	11.9999
GCUG	chr7:142962001-142962239(+)$1	238	138	142	11.9999
GCUG	chr1:150551123-150551390(-)$1	267	10	14	11.9999
GCUG	chr16:67976393-67976648(-)$1	255	64	68	11.9999
GCUG	chr20:61452781-61453044(+)$1	263	160	164	11.9999
GCUG	chr19:1106198-1106447(+)$1	249	3	7	11.9999
GCUG	chr1:24119150-24119403(+)$1	253	61	65	11.9999
GCUG	chr20:61458607-61458912(+)$1	305	106	110	11.9999
GCUG	chr17:79953327-79953578(+)$1	251	1	5	11.9999
GCUG	chrM:14222-14435(-)$1	213	69	73	11.9999
GCUG	chr7:75614754-75614985(+)$1	231	33	37	11.9999
GCUG	chr16:67984709-67984966(-)$1	257	11	15	11.9999
GCUG	chr17:80050938-80051192(-)$1	254	15	19	11.9999
GCUG	chr9:139718017-139718306(+)$1	289	2	6	11.9999
GCUG	chr9:134358243-134358532(+)$1	289	11	15	11.9999
GCUG	chr11:721663-721908(+)$1	245	165	169	11.9999
GCUG	chr3:38388367-38388611(+)$1	244	14	18	11.9999
GCUG	chr17:80047206-80047440(-)$1	234	206	210	11.9999
GCUG	chr5:179248104-179248383(+)$1	279	2	6	11.9999
GCUG	chr16:88718714-88718961(-)$1	247	20	24	11.9999
GCUG	chr9:140347364-140347588(-)$1	224	36	40	11.9999
GCUG	chr16:88723676-88723910(-)$1	234	24	28	11.9999
GCUG	chr6:74230519-74230781(-)$1	262	143	147	11.9999
GCUG	chr11:821960-822188(+)$1	228	204	208	11.9999
GCUG	chr13:50571681-50571937(+)$1	256	71	75	11.9999
GCUG	chr8:134256408-134256674(-)$1	266	1	5	11.9999
GCUG	chr17:7011759-7012033(-)$1	274	59	63	11.9999
GCUG	chr14:35872778-35872996(-)$1	218	146	150	11.9999
GCUG	chr7:100282732-100283073(-)$1	341	140	144	11.9999
GCUG	chr16:50664604-50664846(+)$1	242	52	56	11.9999
GCUG	chr7:1027081-1027357(+)$1	276	39	43	11.9999
GCUG	chrM:492-714(+)$1	222	35	39	11.9999
GCUG	chrX:153668587-153668866(+)$1	279	118	122	11.9999
GCUG	chr7:150774541-150774786(-)$1	245	66	70	11.9999
GCUG	chr3:52325027-52325246(+)$1	219	23	27	11.9999
GCUG	chr11:724784-725061(+)$1	277	52	56	11.9999
GCUG	chr6:132271746-132271990(-)$1	244	143	147	11.9999
GCUG	chr9:140347334-140347564(-)$1	230	12	16	11.9999
GCUG	chr19:46357608-46357893(-)$1	285	82	86	11.9999
GCUG	chr19:57334813-57335035(-)$1	222	115	119	11.9999
GCUG	chr16:2578652-2578898(+)$1	246	8	12	11.9999
GCUG	chr3:133465253-133465471(+)$1	218	7	11	11.9999
GCUG	chr7:73010748-73011033(-)$1	285	237	241	11.9999
GCUG	chr17:79868892-79869126(-)$1	234	110	114	11.9999
GCUG	chr11:70265862-70266136(+)$1	274	259	263	11.9999
GCUG	chr10:102740036-102740296(+)$1	260	28	32	11.9999
GCUG	chr14:54418396-54418665(-)$1	269	128	132	11.9999
GCUG	chr20:60856116-60856361(+)$1	245	32	36	11.9999

#otherMatches

#Struct PSSM
C::f	chr14:39644550-39644816(+)$1	266	229	233	11.9999
b[cc	chr16:29816008-29816262(+)$1	254	24	28	11.9999
bb::	chr19:54024502-54024758(+)$1	256	126	130	11.9999
ffff	chr16:11945079-11945339(-)$1	260	59	63	11.9999
eeee	chr11:62623136-62623376(-)$1	240	64	68	11.9999
====	chr20:61846853-61847101(-)$1	248	203	207	11.9999
ffss	chr4:39460321-39460585(-)$1	264	58	62	11.9999
nnnn	chr14:23791027-23791290(+)$1	263	35	39	11.9999
ffff	chr1:1289508-1289782(-)$1	274	54	58	11.9999
bb[f	chr11:822510-822752(+)$1	242	11	15	11.9999
d!!g	chr2:219267643-219267872(+)$1	229	182	186	11.9999
]ddd	chr19:59059987-59060219(+)$1	232	195	199	11.9999
bbee	chr22:29196055-29196324(-)$1	269	30	34	11.9999
eeee	chr19:45571284-45571545(+)$1	261	1	5	11.9999
DFFF	chr1:155288225-155288498(+)$1	273	144	148	11.9999
ddd[	chr1:44442124-44442392(+)$1	268	50	54	11.9999
llcc	chr17:4685868-4686119(+)$1	251	244	248	11.9999
hhhh	chr2:219266335-219266545(+)$1	210	14	18	11.9999
eee[	chrM:14157-14381(-)$1	224	15	19	11.9999
EEEE	chr7:100778996-100779213(+)$1	217	27	31	11.9999
eemm	chr1:43212718-43212989(-)$1	271	75	79	11.9999
bb[f	chr17:80194097-80194356(+)$1	259	50	54	11.9999
fffl	chr21:47571226-47571531(-)$1	305	118	122	11.9999
eee[	chrM:14282-14501(-)$1	219	135	139	11.9999
eeee	chr7:150777605-150777858(-)$1	253	111	115	11.9999
ccco	chr9:139685915-139686186(+)$1	271	2	6	11.9999
]ccc	chr17:27074221-27074456(+)$1	235	119	123	11.9999
ffff	chr16:72142227-72142502(+)$1	275	246	250	11.9999
zzzz	chr17:4686007-4686270(+)$1	263	105	109	11.9999
ffff	chr5:172197443-172197688(-)$1	245	205	209	11.9999
dddd	chr2:128180682-128180991(+)$1	309	20	24	11.9999
bbnn	chr9:135930323-135930613(+)$1	290	55	59	11.9999
EE{B	chr3:50311004-50311271(+)$1	267	20	24	11.9999
ffff	chr5:175958297-175958551(-)$1	254	8	12	11.9999
bb[b	chr12:7023720-7023969(+)$1	249	181	185	11.9999
"""c	chr20:56140101-56140341(+)$1	240	21	25	11.9999
DCCC	chr20:56138169-56138419(+)$1	250	20	24	11.9999
eepp	chr1:156351927-156352197(+)$1	270	30	34	11.9999
[ddd	chr7:142962001-142962239(+)$1	238	138	142	11.9999
CCCE	chr1:150551123-150551390(-)$1	267	10	14	11.9999
EEEE	chr16:67976393-67976648(-)$1	255	64	68	11.9999
JJdd	chr20:61452781-61453044(+)$1	263	160	164	11.9999
cc[e	chr19:1106198-1106447(+)$1	249	3	7	11.9999
ccc[	chr1:24119150-24119403(+)$1	253	61	65	11.9999
a]a]	chr20:61458607-61458912(+)$1	305	106	110	11.9999
EEEE	chr17:79953327-79953578(+)$1	251	1	5	11.9999
ddd[	chrM:14222-14435(-)$1	213	69	73	11.9999
{AOO	chr7:75614754-75614985(+)$1	231	33	37	11.9999
ppbb	chr16:67984709-67984966(-)$1	257	11	15	11.9999
IIIL	chr17:80050938-80051192(-)$1	254	15	19	11.9999
[ddd	chr9:139718017-139718306(+)$1	289	2	6	11.9999
{BB:	chr9:134358243-134358532(+)$1	289	11	15	11.9999
fffd	chr11:721663-721908(+)$1	245	165	169	11.9999
DDff	chr3:38388367-38388611(+)$1	244	14	18	11.9999
:::D	chr17:80047206-80047440(-)$1	234	206	210	11.9999
FFFF	chr5:179248104-179248383(+)$1	279	2	6	11.9999
ccc[	chr16:88718714-88718961(-)$1	247	20	24	11.9999
ccbb	chr9:140347364-140347588(-)$1	224	36	40	11.9999
###f	chr16:88723676-88723910(-)$1	234	24	28	11.9999
[ccc	chr6:74230519-74230781(-)$1	262	143	147	11.9999
ccdd	chr11:821960-822188(+)$1	228	204	208	11.9999
dddd	chr13:50571681-50571937(+)$1	256	71	75	11.9999
dddb	chr8:134256408-134256674(-)$1	266	1	5	11.9999
cccf	chr17:7011759-7012033(-)$1	274	59	63	11.9999
dddd	chr14:35872778-35872996(-)$1	218	146	150	11.9999
333f	chr7:100282732-100283073(-)$1	341	140	144	11.9999
qqqq	chr16:50664604-50664846(+)$1	242	52	56	11.9999
====	chr7:1027081-1027357(+)$1	276	39	43	11.9999
dddd	chrM:492-714(+)$1	222	35	39	11.9999
!!ff	chrX:153668587-153668866(+)$1	279	118	122	11.9999
!ccc	chr7:150774541-150774786(-)$1	245	66	70	11.9999
{CCC	chr3:52325027-52325246(+)$1	219	23	27	11.9999
ddd]	chr11:724784-725061(+)$1	277	52	56	11.9999
ffff	chr6:132271746-132271990(-)$1	244	143	147	11.9999
ccbb	chr9:140347334-140347564(-)$1	230	12	16	11.9999
EEEE	chr19:46357608-46357893(-)$1	285	82	86	11.9999
ebbl	chr19:57334813-57335035(-)$1	222	115	119	11.9999
dddd	chr16:2578652-2578898(+)$1	246	8	12	11.9999
dddm	chr3:133465253-133465471(+)$1	218	7	11	11.9999
eeee	chr7:73010748-73011033(-)$1	285	237	241	11.9999
GGGG	chr17:79868892-79869126(-)$1	234	110	114	11.9999
GGGG	chr11:70265862-70266136(+)$1	274	259	263	11.9999
EE{C	chr10:102740036-102740296(+)$1	260	28	32	11.9999
7777	chr14:54418396-54418665(-)$1	269	128	132	11.9999
eee!	chr20:60856116-60856361(+)$1	245	32	36	11.9999

#DB
)..(	chr14:39644550-39644816(+)$1	1	229	233	11.9999
(.((	chr16:29816008-29816262(+)$1	1	24	28	11.9999
))..	chr19:54024502-54024758(+)$1	1	126	130	11.9999
))))	chr16:11945079-11945339(-)$1	1	59	63	11.9999
((((	chr11:62623136-62623376(-)$1	1	64	68	11.9999
))))	chr20:61846853-61847101(-)$1	1	203	207	11.9999
((..	chr4:39460321-39460585(-)$1	1	58	62	11.9999
....	chr14:23791027-23791290(+)$1	1	35	39	11.9999
((((	chr1:1289508-1289782(-)$1	1	54	58	11.9999
((.(	chr11:822510-822752(+)$1	1	11	15	11.9999
(..(	chr2:219267643-219267872(+)$1	1	182	186	11.9999
.)))	chr19:59059987-59060219(+)$1	1	195	199	11.9999
))))	chr22:29196055-29196324(-)$1	1	30	34	11.9999
((((	chr19:45571284-45571545(+)$1	1	1	5	11.9999
((((	chr1:155288225-155288498(+)$1	1	144	148	11.9999
(((.	chr1:44442124-44442392(+)$1	1	50	54	11.9999
..))	chr17:4685868-4686119(+)$1	1	244	248	11.9999
((((	chr2:219266335-219266545(+)$1	1	14	18	11.9999
(((.	chrM:14157-14381(-)$1	1	15	19	11.9999
((((	chr7:100778996-100779213(+)$1	1	27	31	11.9999
((..	chr1:43212718-43212989(-)$1	1	75	79	11.9999
((.(	chr17:80194097-80194356(+)$1	1	50	54	11.9999
(((.	chr21:47571226-47571531(-)$1	1	118	122	11.9999
(((.	chrM:14282-14501(-)$1	1	135	139	11.9999
((((	chr7:150777605-150777858(-)$1	1	111	115	11.9999
(((.	chr9:139685915-139686186(+)$1	1	2	6	11.9999
.)))	chr17:27074221-27074456(+)$1	1	119	123	11.9999
))))	chr16:72142227-72142502(+)$1	1	246	250	11.9999
....	chr17:4686007-4686270(+)$1	1	105	109	11.9999
))))	chr5:172197443-172197688(-)$1	1	205	209	11.9999
))))	chr2:128180682-128180991(+)$1	1	20	24	11.9999
((..	chr9:135930323-135930613(+)$1	1	55	59	11.9999
((.(	chr3:50311004-50311271(+)$1	1	20	24	11.9999
((((	chr5:175958297-175958551(-)$1	1	8	12	11.9999
((.(	chr12:7023720-7023969(+)$1	1	181	185	11.9999
...(	chr20:56140101-56140341(+)$1	1	21	25	11.9999
((((	chr20:56138169-56138419(+)$1	1	20	24	11.9999
((..	chr1:156351927-156352197(+)$1	1	30	34	11.9999
.(((	chr7:142962001-142962239(+)$1	1	138	142	11.9999
((((	chr1:150551123-150551390(-)$1	1	10	14	11.9999
((((	chr16:67976393-67976648(-)$1	1	64	68	11.9999
))((	chr20:61452781-61453044(+)$1	1	160	164	11.9999
((.(	chr19:1106198-1106447(+)$1	1	3	7	11.9999
(((.	chr1:24119150-24119403(+)$1	1	61	65	11.9999
).).	chr20:61458607-61458912(+)$1	1	106	110	11.9999
((((	chr17:79953327-79953578(+)$1	1	1	5	11.9999
(((.	chrM:14222-14435(-)$1	1	69	73	11.9999
.(..	chr7:75614754-75614985(+)$1	1	33	37	11.9999
..))	chr16:67984709-67984966(-)$1	1	11	15	11.9999
(((.	chr17:80050938-80051192(-)$1	1	15	19	11.9999
.(((	chr9:139718017-139718306(+)$1	1	2	6	11.9999
.((.	chr9:134358243-134358532(+)$1	1	11	15	11.9999
)))(	chr11:721663-721908(+)$1	1	165	169	11.9999
((((	chr3:38388367-38388611(+)$1	1	14	18	11.9999
...)	chr17:80047206-80047440(-)$1	1	206	210	11.9999
((((	chr5:179248104-179248383(+)$1	1	2	6	11.9999
(((.	chr16:88718714-88718961(-)$1	1	20	24	11.9999
((((	chr9:140347364-140347588(-)$1	1	36	40	11.9999
...(	chr16:88723676-88723910(-)$1	1	24	28	11.9999
.(((	chr6:74230519-74230781(-)$1	1	143	147	11.9999
((((	chr11:821960-822188(+)$1	1	204	208	11.9999
((((	chr13:50571681-50571937(+)$1	1	71	75	11.9999
((((	chr8:134256408-134256674(-)$1	1	1	5	11.9999
)))(	chr17:7011759-7012033(-)$1	1	59	63	11.9999
((((	chr14:35872778-35872996(-)$1	1	146	150	11.9999
...)	chr7:100282732-100283073(-)$1	1	140	144	11.9999
....	chr16:50664604-50664846(+)$1	1	52	56	11.9999
))))	chr7:1027081-1027357(+)$1	1	39	43	11.9999
))))	chrM:492-714(+)$1	1	35	39	11.9999
..((	chrX:153668587-153668866(+)$1	1	118	122	11.9999
.(((	chr7:150774541-150774786(-)$1	1	66	70	11.9999
.(((	chr3:52325027-52325246(+)$1	1	23	27	11.9999
))).	chr11:724784-725061(+)$1	1	52	56	11.9999
((((	chr6:132271746-132271990(-)$1	1	143	147	11.9999
((((	chr9:140347334-140347564(-)$1	1	12	16	11.9999
((((	chr19:46357608-46357893(-)$1	1	82	86	11.9999
(((.	chr19:57334813-57335035(-)$1	1	115	119	11.9999
((((	chr16:2578652-2578898(+)$1	1	8	12	11.9999
(((.	chr3:133465253-133465471(+)$1	1	7	11	11.9999
))))	chr7:73010748-73011033(-)$1	1	237	241	11.9999
))))	chr17:79868892-79869126(-)$1	1	110	114	11.9999
))))	chr11:70265862-70266136(+)$1	1	259	263	11.9999
((.(	chr10:102740036-102740296(+)$1	1	28	32	11.9999
....	chr14:54418396-54418665(-)$1	1	128	132	11.9999
(((.	chr20:60856116-60856361(+)$1	1	32	36	11.9999

#PSSM
G : 0.98	g : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	1019.9999999999995
#seq	85
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_transcript_m1_run1.nuc.txt

#NT
gggc	chr4:1312902-1313193(+)$1	291	46	50	12.0000
GGGC	chr1:161576987-161577226(+)$1	239	113	117	12.0000
GGGC	chr16:88826894-88827172(-)$1	278	14	18	12.0000
GGGC	chr21:9910296-9910511(-)$1	215	75	79	12.0000
gggc	chr2:3326915-3327147(-)$1	232	19	23	12.0000
GGGC	chr16:85674509-85674766(+)$1	257	7	11	12.0000
GGGC	chr7:1067644-1067947(-)$1	303	65	69	12.0000
GGGC	chr7:1886174-1886380(-)$1	206	15	19	12.0000
gggc	chr16:74352688-74352944(-)$1	256	224	228	12.0000
GGGC	chr2:10335333-10335623(+)$1	290	8	12	12.0000
GGGC	chr20:60623699-60623976(-)$1	277	10	14	12.0000
GGGC	chr9:131465518-131465755(+)$1	237	30	34	12.0000
GGGC	chr2:10331643-10331915(+)$1	272	85	89	12.0000
GGGC	chr13:108518837-108519094(-)$1	257	130	134	12.0000
GGGC	chr9:140285881-140286145(-)$1	264	14	18	12.0000
gggc	chr4:846840-847130(-)$1	290	217	221	12.0000
GGGC	chr5:149110499-149110815(+)$1	316	44	48	12.0000
GGGC	chrX:39951368-39951641(-)$1	273	112	116	12.0000
GGGC	chr7:1162499-1162748(-)$1	249	13	17	12.0000
gggc	chr8:58117575-58117785(+)$1	210	85	89	12.0000
GGGC	chr22:49943025-49943356(-)$1	331	136	140	12.0000
ggGC	chr16:88538211-88538474(+)$1	263	19	23	12.0000
GGGC	chr1:29214716-29214977(+)$1	261	25	29	12.0000
GGGC	chr22:50277366-50277658(+)$1	292	120	124	12.0000
gggc	chr16:81550049-81550376(+)$1	327	177	181	12.0000
GGGC	chr8:140850178-140850423(-)$1	245	49	53	12.0000
GGGC	chr16:587358-587586(+)$1	228	21	25	12.0000
GGGC	chr19:940908-941154(+)$1	246	2	6	12.0000
GGGC	chr20:57467538-57467786(+)$1	248	49	53	12.0000
gggc	chr3:13461586-13461874(-)$1	288	75	79	12.0000
GGGC	chr7:2169428-2169687(-)$1	259	87	91	12.0000
GGGC	chr4:1828264-1828536(-)$1	272	99	103	12.0000
GGGC	chr19:5123824-5124072(+)$1	248	64	68	12.0000
GGGC	chr7:1131018-1131308(-)$1	290	177	181	12.0000
gggc	chr8:660169-660463(-)$1	294	251	255	12.0000
gggc	chr19:40549384-40549635(-)$1	251	114	118	12.0000
GGGC	chr1:16258932-16259236(+)$1	304	113	117	12.0000
GGGC	chr12:132425572-132425812(+)$1	240	180	184	12.0000
GGGC	chr1:246137213-246137465(-)$1	252	109	113	12.0000
GGGC	chr16:89034741-89035000(-)$1	259	90	94	12.0000
GGGC	chr22:20020476-20020759(+)$1	283	6	10	12.0000
GGGC	chr11:782257-782506(+)$1	249	23	27	12.0000
GGGC	chr7:1889363-1889609(-)$1	246	49	53	12.0000
GGGC	chr1:65720252-65720508(+)$1	256	88	92	12.0000
GGGC	chr16:642334-642633(+)$1	299	38	42	12.0000
GGGC	chr8:144999114-144999365(-)$1	251	106	110	12.0000
gggc	chr19:509755-510018(+)$1	263	15	19	12.0000
GGGC	chr12:133128200-133128450(+)$1	250	160	164	12.0000
GGGC	chr19:5719804-5720060(-)$1	256	1	5	12.0000
GGGC	chr2:32428806-32429123(+)$1	317	121	125	12.0000
GGGC	chr2:3475942-3476213(+)$1	271	17	21	12.0000
GGGC	chr20:32255318-32255615(-)$1	297	14	18	12.0000
GGGC	chr5:28926360-28926638(+)$1	278	96	100	12.0000
gggc	chr22:49857315-49857559(-)$1	244	108	112	12.0000
GGGC	chr21:9909422-9909680(-)$1	258	75	79	12.0000
GGGC	chr19:955604-955833(+)$1	229	89	93	12.0000
GGGC	chr22:50013063-50013357(-)$1	294	158	162	12.0000
GGGC	chr8:2669086-2669402(+)$1	316	134	138	12.0000
gggc	chr2:236545845-236546087(+)$1	242	114	118	12.0000
GGGC	chr22:50019892-50020150(-)$1	258	67	71	12.0000
GGGC	chr1:245026527-245026787(-)$1	260	0	4	12.0000
GGGC	chr9:125877302-125877553(-)$1	251	48	52	12.0000
GGGC	chr10:133764045-133764326(+)$1	281	125	129	12.0000
GGGC	chr2:47747889-47748150(+)$1	261	141	145	12.0000
GGGC	chr4:761082-761346(-)$1	264	64	68	12.0000
GGGC	chr16:87739520-87739768(-)$1	248	24	28	12.0000
GGGC	chr16:89181010-89181268(+)$1	258	204	208	12.0000
GGGC	chr14:105907195-105907527(+)$1	332	73	77	12.0000
GGGC	chr16:1783480-1783722(+)$1	242	25	29	12.0000
GGGC	chr4:774825-775074(-)$1	249	96	100	12.0000
GGGC	chr16:89034076-89034337(-)$1	261	41	45	12.0000
GGGC	chr16:1799310-1799586(+)$1	276	25	29	12.0000
GGGC	chr16:85646700-85646990(+)$1	290	98	102	12.0000
GGGC	chr19:2270062-2270392(+)$1	330	80	84	12.0000
GGGC	chr11:845853-846108(+)$1	255	8	12	12.0000
GGGC	chr22:49958465-49958706(-)$1	241	48	52	12.0000
GGGC	chr11:62285658-62285902(-)$1	244	89	93	12.0000
GGGC	chr7:819108-819419(+)$1	311	82	86	12.0000
gggc	chr22:49963129-49963381(-)$1	252	11	15	12.0000
GGGC	chr3:13411893-13412164(-)$1	271	144	148	12.0000
GGGC	chr16:85658110-85658341(+)$1	231	162	166	12.0000
GGGC	chr18:77491263-77491520(+)$1	257	37	41	12.0000
gggc	chr7:2080548-2080828(-)$1	280	5	9	12.0000
GGGc	chr16:89431016-89431268(-)$1	252	116	120	12.0000
GGGC	chr4:140036423-140036693(-)$1	270	1	5	12.0000
GGGC	chr17:46679512-46679759(-)$1	247	117	121	12.0000
GGGC	chr16:88998172-88998392(-)$1	220	175	179	12.0000
gggc	chr9:139560218-139560445(+)$1	227	3	7	12.0000
GGGC	chr19:58990973-58991244(-)$1	271	55	59	12.0000
GGGC	chr21:45349522-45349771(+)$1	249	109	113	12.0000
GGGC	chr10:43903577-43903831(-)$1	254	74	78	12.0000

#otherMatches

#Struct PSSM
bb:b	chr19:5077976-5078243(+)$1	267	38	42	12.0000
gggg	chr4:1312902-1313193(+)$1	291	46	50	12.0000
dddd	chr1:161576987-161577226(+)$1	239	113	117	12.0000
ffff	chr16:88826894-88827172(-)$1	278	14	18	12.0000
qqqq	chr21:9910296-9910511(-)$1	215	75	79	12.0000
mmmd	chr2:3326915-3327147(-)$1	232	19	23	12.0000
DDBB	chr16:85674509-85674766(+)$1	257	7	11	12.0000
JJJJ	chr7:1067644-1067947(-)$1	303	65	69	12.0000
ccc!	chr7:1886174-1886380(-)$1	206	15	19	12.0000
:a[b	chr16:74352688-74352944(-)$1	256	224	228	12.0000
EEEE	chr2:10335333-10335623(+)$1	290	8	12	12.0000
B:ff	chr20:60623699-60623976(-)$1	277	10	14	12.0000
KAEE	chr9:131465518-131465755(+)$1	237	30	34	12.0000
BB{B	chr2:10331643-10331915(+)$1	272	85	89	12.0000
ifff	chr13:108518837-108519094(-)$1	257	130	134	12.0000
DDDD	chr9:140285881-140286145(-)$1	264	14	18	12.0000
eee[	chr4:846840-847130(-)$1	290	217	221	12.0000
nnnn	chr5:149110499-149110815(+)$1	316	44	48	12.0000
ffff	chrX:39951368-39951641(-)$1	273	112	116	12.0000
hhll	chr7:1162499-1162748(-)$1	249	13	17	12.0000
eee2	chr8:58117575-58117785(+)$1	210	85	89	12.0000
dddd	chr22:49943025-49943356(-)$1	331	136	140	12.0000
eee:	chr16:88538211-88538474(+)$1	263	19	23	12.0000
b[gg	chr1:29214716-29214977(+)$1	261	25	29	12.0000
ddbb	chr22:50277366-50277658(+)$1	292	120	124	12.0000
mmee	chr16:81550049-81550376(+)$1	327	177	181	12.0000
ffff	chr8:140850178-140850423(-)$1	245	49	53	12.0000
!!cc	chr16:587358-587586(+)$1	228	21	25	12.0000
CDDD	chr19:940908-941154(+)$1	246	2	6	12.0000
:ccc	chr20:57467538-57467786(+)$1	248	49	53	12.0000
gggg	chr3:13461586-13461874(-)$1	288	75	79	12.0000
dddd	chr7:2169428-2169687(-)$1	259	87	91	12.0000
dddd	chr4:1828264-1828536(-)$1	272	99	103	12.0000
eeee	chr19:5123824-5124072(+)$1	248	64	68	12.0000
mma]	chr7:1131018-1131308(-)$1	290	177	181	12.0000
occc	chr8:660169-660463(-)$1	294	251	255	12.0000
QQBB	chr19:40549384-40549635(-)$1	251	114	118	12.0000
gggg	chr1:16258932-16259236(+)$1	304	113	117	12.0000
ggg!	chr12:132425572-132425812(+)$1	240	180	184	12.0000
ccmm	chr1:246137213-246137465(-)$1	252	109	113	12.0000
dddr	chr16:89034741-89035000(-)$1	259	90	94	12.0000
:ggg	chr22:20020476-20020759(+)$1	283	6	10	12.0000
rrrr	chr11:782257-782506(+)$1	249	23	27	12.0000
{FFF	chr7:1889363-1889609(-)$1	246	49	53	12.0000
ii]a	chr1:65720252-65720508(+)$1	256	88	92	12.0000
HHHH	chr16:642334-642633(+)$1	299	38	42	12.0000
[ccc	chr8:144999114-144999365(-)$1	251	106	110	12.0000
ccc[	chr19:509755-510018(+)$1	263	15	19	12.0000
ffff	chr12:133128200-133128450(+)$1	250	160	164	12.0000
!!dd	chr19:5719804-5720060(-)$1	256	1	5	12.0000
HHcc	chr2:32428806-32429123(+)$1	317	121	125	12.0000
"""c	chr2:3475942-3476213(+)$1	271	17	21	12.0000
HHHH	chr20:32255318-32255615(-)$1	297	14	18	12.0000
eeee	chr5:28926360-28926638(+)$1	278	96	100	12.0000
ffff	chr22:49857315-49857559(-)$1	244	108	112	12.0000
KKBB	chr21:9909422-9909680(-)$1	258	75	79	12.0000
EEEE	chr19:955604-955833(+)$1	229	89	93	12.0000
ee!!	chr22:50013063-50013357(-)$1	294	158	162	12.0000
##dd	chr8:2669086-2669402(+)$1	316	134	138	12.0000
ffff	chr2:236545845-236546087(+)$1	242	114	118	12.0000
GGGG	chr22:50019892-50020150(-)$1	258	67	71	12.0000
:ccc	chr1:245026527-245026787(-)$1	260	0	4	12.0000
FFFF	chr9:125877302-125877553(-)$1	251	48	52	12.0000
GGGG	chr10:133764045-133764326(+)$1	281	125	129	12.0000
cbb:	chr2:47747889-47748150(+)$1	261	141	145	12.0000
ccee	chr4:761082-761346(-)$1	264	64	68	12.0000
iiii	chr16:87739520-87739768(-)$1	248	24	28	12.0000
iiee	chr16:89181010-89181268(+)$1	258	204	208	12.0000
"""d	chr14:105907195-105907527(+)$1	332	73	77	12.0000
EEEE	chr16:1783480-1783722(+)$1	242	25	29	12.0000
EEbb	chr4:774825-775074(-)$1	249	96	100	12.0000
FFFF	chr16:89034076-89034337(-)$1	261	41	45	12.0000
ddd[	chr16:1799310-1799586(+)$1	276	25	29	12.0000
eeee	chr16:85646700-85646990(+)$1	290	98	102	12.0000
bb[d	chr19:2270062-2270392(+)$1	330	80	84	12.0000
HHcc	chr11:845853-846108(+)$1	255	8	12	12.0000
BBCC	chr22:49958465-49958706(-)$1	241	48	52	12.0000
hhhh	chr11:62285658-62285902(-)$1	244	89	93	12.0000
ccbb	chr7:819108-819419(+)$1	311	82	86	12.0000
Eccc	chr22:49963129-49963381(-)$1	252	11	15	12.0000
:hhh	chr3:13411893-13412164(-)$1	271	144	148	12.0000
dddd	chr16:85658110-85658341(+)$1	231	162	166	12.0000
a]hh	chr18:77491263-77491520(+)$1	257	37	41	12.0000
::bb	chr7:2080548-2080828(-)$1	280	5	9	12.0000
:BB}	chr16:89431016-89431268(-)$1	252	116	120	12.0000
EEEE	chr4:140036423-140036693(-)$1	270	1	5	12.0000
dddd	chr17:46679512-46679759(-)$1	247	117	121	12.0000
]ggg	chr16:88998172-88998392(-)$1	220	175	179	12.0000
[===	chr9:139560218-139560445(+)$1	227	3	7	12.0000
====	chr19:58990973-58991244(-)$1	271	55	59	12.0000
====	chr21:45349522-45349771(+)$1	249	109	113	12.0000
fddd	chr10:43903577-43903831(-)$1	254	74	78	12.0000

#DB
)).(	chr19:5077976-5078243(+)$1	1	38	42	12.0000
))))	chr4:1312902-1313193(+)$1	1	46	50	12.0000
))))	chr1:161576987-161577226(+)$1	1	113	117	12.0000
((((	chr16:88826894-88827172(-)$1	1	14	18	12.0000
....	chr21:9910296-9910511(-)$1	1	75	79	12.0000
...)	chr2:3326915-3327147(-)$1	1	19	23	12.0000
((((	chr16:85674509-85674766(+)$1	1	7	11	12.0000
((((	chr7:1067644-1067947(-)$1	1	65	69	12.0000
(((.	chr7:1886174-1886380(-)$1	1	15	19	12.0000
.(.(	chr16:74352688-74352944(-)$1	1	224	228	12.0000
((((	chr2:10335333-10335623(+)$1	1	8	12	12.0000
(.((	chr20:60623699-60623976(-)$1	1	10	14	12.0000
.(((	chr9:131465518-131465755(+)$1	1	30	34	12.0000
((.(	chr2:10331643-10331915(+)$1	1	85	89	12.0000
((((	chr13:108518837-108519094(-)$1	1	130	134	12.0000
((((	chr9:140285881-140286145(-)$1	1	14	18	12.0000
(((.	chr4:846840-847130(-)$1	1	217	221	12.0000
....	chr5:149110499-149110815(+)$1	1	44	48	12.0000
((((	chrX:39951368-39951641(-)$1	1	112	116	12.0000
((..	chr7:1162499-1162748(-)$1	1	13	17	12.0000
))).	chr8:58117575-58117785(+)$1	1	85	89	12.0000
((((	chr22:49943025-49943356(-)$1	1	136	140	12.0000
))).	chr16:88538211-88538474(+)$1	1	19	23	12.0000
(.((	chr1:29214716-29214977(+)$1	1	25	29	12.0000
((((	chr22:50277366-50277658(+)$1	1	120	124	12.0000
..))	chr16:81550049-81550376(+)$1	1	177	181	12.0000
((((	chr8:140850178-140850423(-)$1	1	49	53	12.0000
..((	chr16:587358-587586(+)$1	1	21	25	12.0000
((((	chr19:940908-941154(+)$1	1	2	6	12.0000
.(((	chr20:57467538-57467786(+)$1	1	49	53	12.0000
))))	chr3:13461586-13461874(-)$1	1	75	79	12.0000
))))	chr7:2169428-2169687(-)$1	1	87	91	12.0000
((((	chr4:1828264-1828536(-)$1	1	99	103	12.0000
((((	chr19:5123824-5124072(+)$1	1	64	68	12.0000
..).	chr7:1131018-1131308(-)$1	1	177	181	12.0000
.)))	chr8:660169-660463(-)$1	1	251	255	12.0000
..((	chr19:40549384-40549635(-)$1	1	114	118	12.0000
))))	chr1:16258932-16259236(+)$1	1	113	117	12.0000
(((.	chr12:132425572-132425812(+)$1	1	180	184	12.0000
((..	chr1:246137213-246137465(-)$1	1	109	113	12.0000
(((.	chr16:89034741-89035000(-)$1	1	90	94	12.0000
.(((	chr22:20020476-20020759(+)$1	1	6	10	12.0000
....	chr11:782257-782506(+)$1	1	23	27	12.0000
.(((	chr7:1889363-1889609(-)$1	1	49	53	12.0000
)).)	chr1:65720252-65720508(+)$1	1	88	92	12.0000
((((	chr16:642334-642633(+)$1	1	38	42	12.0000
.(((	chr8:144999114-144999365(-)$1	1	106	110	12.0000
(((.	chr19:509755-510018(+)$1	1	15	19	12.0000
((((	chr12:133128200-133128450(+)$1	1	160	164	12.0000
..((	chr19:5719804-5720060(-)$1	1	1	5	12.0000
))((	chr2:32428806-32429123(+)$1	1	121	125	12.0000
...(	chr2:3475942-3476213(+)$1	1	17	21	12.0000
((((	chr20:32255318-32255615(-)$1	1	14	18	12.0000
((((	chr5:28926360-28926638(+)$1	1	96	100	12.0000
))))	chr22:49857315-49857559(-)$1	1	108	112	12.0000
..((	chr21:9909422-9909680(-)$1	1	75	79	12.0000
((((	chr19:955604-955833(+)$1	1	89	93	12.0000
((..	chr22:50013063-50013357(-)$1	1	158	162	12.0000
..((	chr8:2669086-2669402(+)$1	1	134	138	12.0000
((((	chr2:236545845-236546087(+)$1	1	114	118	12.0000
((((	chr22:50019892-50020150(-)$1	1	67	71	12.0000
.(((	chr1:245026527-245026787(-)$1	1	0	4	12.0000
((((	chr9:125877302-125877553(-)$1	1	48	52	12.0000
((((	chr10:133764045-133764326(+)$1	1	125	129	12.0000
))).	chr2:47747889-47748150(+)$1	1	141	145	12.0000
))((	chr4:761082-761346(-)$1	1	64	68	12.0000
((((	chr16:87739520-87739768(-)$1	1	24	28	12.0000
((((	chr16:89181010-89181268(+)$1	1	204	208	12.0000
...(	chr14:105907195-105907527(+)$1	1	73	77	12.0000
((((	chr16:1783480-1783722(+)$1	1	25	29	12.0000
((((	chr4:774825-775074(-)$1	1	96	100	12.0000
((((	chr16:89034076-89034337(-)$1	1	41	45	12.0000
(((.	chr16:1799310-1799586(+)$1	1	25	29	12.0000
))))	chr16:85646700-85646990(+)$1	1	98	102	12.0000
((.(	chr19:2270062-2270392(+)$1	1	80	84	12.0000
((((	chr11:845853-846108(+)$1	1	8	12	12.0000
((((	chr22:49958465-49958706(-)$1	1	48	52	12.0000
((((	chr11:62285658-62285902(-)$1	1	89	93	12.0000
((((	chr7:819108-819419(+)$1	1	82	86	12.0000
((((	chr22:49963129-49963381(-)$1	1	11	15	12.0000
.(((	chr3:13411893-13412164(-)$1	1	144	148	12.0000
((((	chr16:85658110-85658341(+)$1	1	162	166	12.0000
).))	chr18:77491263-77491520(+)$1	1	37	41	12.0000
..((	chr7:2080548-2080828(-)$1	1	5	9	12.0000
.)).	chr16:89431016-89431268(-)$1	1	116	120	12.0000
((((	chr4:140036423-140036693(-)$1	1	1	5	12.0000
((((	chr17:46679512-46679759(-)$1	1	117	121	12.0000
.)))	chr16:88998172-88998392(-)$1	1	175	179	12.0000
.(((	chr9:139560218-139560445(+)$1	1	3	7	12.0000
((((	chr19:58990973-58991244(-)$1	1	55	59	12.0000
((((	chr21:45349522-45349771(+)$1	1	109	113	12.0000
)(((	chr10:43903577-43903831(-)$1	1	74	78	12.0000

#PSSM
G : 0.82	g : 0.17	
G : 0.82	g : 0.17	
G : 0.83	g : 0.16	
C : 0.82	c : 0.17	

#score	1104.0000000000002
#seq	92
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_CDS_m3_run2.nuc.txt

#NT
CCAGCCUG	chr19:39963604-39963853(+)$1	249	20	28	16.3170
CCUGGCUG	chr1:156518062-156518322(-)$1	260	135	143	16.0731
CCUGCCUG	chr3:49135325-49135573(-)$1	248	12	20	19.6097
CCUCCCUG	chr16:89967045-89967281(+)$1	236	77	85	16.9268
CCAGCCUG	chr10:101606737-101606984(+)$1	247	92	100	16.3170
CCUCUCUG	chr14:105239287-105239530(-)$1	243	11	19	13.1463
CCUGCCUU	chrX:153668579-153668850(+)$1	271	156	164	14.9756
CCUGCCUC	chr7:5662383-5662671(-)$1	288	3	11	14.9756
CCUGCCUG	chr16:2580125-2580405(+)$1	280	158	166	19.6097
CCUCCCUG	chr6:30890128-30890393(+)$1	265	83	91	16.9268
CCGGCCUG	chr19:10940798-10941160(+)$1	362	145	153	15.8292
CCUUCCUG	chr11:62458158-62458439(-)$1	281	206	214	16.6829
ccucACUG	chr17:40265708-40265961(-)$1	253	2	10	13.1463
CCUUCCUG	chr11:18010047-18010330(-)$1	283	92	100	16.6829
CCAGGCUG	chr21:47556729-47556947(-)$1	218	1	9	12.7804
CCAGCCUG	chr9:140137815-140138111(+)$1	296	246	254	16.3170
CCUGCGUG	chr14:105239487-105239780(-)$1	293	205	213	15.0975
CCUGACUG	chr22:31496859-31497138(+)$1	279	69	77	15.8292
CCUCCCUG	chr6:170002216-170002506(-)$1	290	78	86	16.9268
CUUGCCUG	chr14:24028767-24029072(-)$1	305	90	98	15.0975
CCUGGCUG	chr5:176885998-176886335(-)$1	337	281	289	16.0731
CCUGGCUG	chr15:42139847-42140110(+)$1	263	249	257	16.0731
CCUUCCUG	chr11:726617-726835(+)$1	218	123	131	16.6829
CCUGCCUG	chr20:2845136-2845400(+)$1	264	39	47	19.6097
CCUCCCUG	chr17:4447780-4448041(-)$1	261	28	36	16.9268
CCUGCCUG	chr1:110173254-110173506(+)$1	252	172	180	19.6097
CCUGCAUG	chr8:145620103-145620338(-)$1	235	129	137	15.0975
CCUUCCUG	chr11:726569-726800(+)$1	231	171	179	16.6829
CCUUCCUG	chr12:120572343-120572582(-)$1	239	71	79	16.6829
CCUGCCUG	chr21:47558423-47558644(-)$1	221	35	43	19.6097
CCAGCCUG	chr9:35736975-35737303(-)$1	328	179	187	16.3170
CCUCCCUG	chr21:46917427-46917649(+)$1	222	39	47	16.9268
CCUGCCUG	chr1:113242981-113243226(+)$1	245	191	199	19.6097
CCUGCCUG	chr20:61460714-61460938(+)$1	224	10	18	19.6097
CCGGCCUG	chr1:40766934-40767151(-)$1	217	108	116	15.8292
CCAGCCUG	chr20:25176266-25176528(+)$1	262	55	63	16.3170
CCUGCUUG	chr7:73010958-73011178(-)$1	220	163	171	15.0975
CCUGUCUG	chr16:89812939-89813196(-)$1	257	113	121	15.8292
cuugccug	chr16:88719650-88719916(-)$1	266	26	34	15.0975
GCUGCCUG	chr12:58009519-58009800(+)$1	281	104	112	14.8536

#otherMatches

#Struct PSSM
IIIIIIII	chr10:135096477-135096774(-)$1	297	98	106	19.6097
ddd[dddd	chr19:39963604-39963853(+)$1	249	20	28	16.3170
mmmbb]cc	chr1:156518062-156518322(-)$1	260	135	143	16.0731
GGGG:eee	chr3:49135325-49135573(-)$1	248	12	20	19.6097
b333bb22	chr16:89967045-89967281(+)$1	236	77	85	16.9268
hhhhhhh"	chr10:101606737-101606984(+)$1	247	92	100	16.3170
FFFFF::d	chr14:105239287-105239530(-)$1	243	11	19	13.1463
444ccc:D	chrX:153668579-153668850(+)$1	271	156	164	14.9756
:CCC{BBL	chr7:5662383-5662671(-)$1	288	3	11	14.9756
[ccc"""d	chr16:2580125-2580405(+)$1	280	158	166	19.6097
"cccbb[b	chr6:30890128-30890393(+)$1	265	83	91	16.9268
::ccc!!c	chr19:10940798-10941160(+)$1	362	145	153	15.8292
BB}DDDDZ	chr11:62458158-62458439(-)$1	281	206	214	16.6829
:CCCLLLD	chr17:40265708-40265961(-)$1	253	2	10	13.1463
2ccc22cc	chr11:18010047-18010330(-)$1	283	92	100	16.6829
GGGGGGgg	chr21:47556729-47556947(-)$1	218	1	9	12.7804
dffffff]	chr9:140137815-140138111(+)$1	296	246	254	16.3170
EEEEE}CC	chr14:105239487-105239780(-)$1	293	205	213	15.0975
ee:::eee	chr22:31496859-31497138(+)$1	279	69	77	15.8292
cccooooo	chr6:170002216-170002506(-)$1	290	78	86	16.9268
''bb"""e	chr14:24028767-24029072(-)$1	305	90	98	15.0975
ggggg"""	chr5:176885998-176886335(-)$1	337	281	289	16.0731
JJJJJJJJ	chr15:42139847-42140110(+)$1	263	249	257	16.0731
rrrrrccc	chr11:726617-726835(+)$1	218	123	131	16.6829
dddd!!cc	chr20:2845136-2845400(+)$1	264	39	47	19.6097
yyyyyyyd	chr17:4447780-4448041(-)$1	261	28	36	16.9268
ccddddqq	chr1:110173254-110173506(+)$1	252	172	180	19.6097
nnneeeee	chr8:145620103-145620338(-)$1	235	129	137	15.0975
rrrrrccc	chr11:726569-726800(+)$1	231	171	179	16.6829
cc22dddd	chr12:120572343-120572582(-)$1	239	71	79	16.6829
f:::FFFF	chr21:47558423-47558644(-)$1	221	35	43	19.6097
sssbb]dd	chr9:35736975-35737303(-)$1	328	179	187	16.3170
eee"""cc	chr21:46917427-46917649(+)$1	222	39	47	16.9268
ZZZBBCCC	chr1:113242981-113243226(+)$1	245	191	199	19.6097
CC{DDDDd	chr20:61460714-61460938(+)$1	224	10	18	19.6097
ggnnnnng	chr1:40766934-40767151(-)$1	217	108	116	15.8292
iiiiii:B	chr20:25176266-25176528(+)$1	262	55	63	16.3170
affffffp	chr7:73010958-73011178(-)$1	220	163	171	15.0975
BCCCEEEE	chr16:89812939-89813196(-)$1	257	113	121	15.8292
cooooooc	chr16:88719650-88719916(-)$1	266	26	34	15.0975
b[ccc!!c	chr12:58009519-58009800(+)$1	281	104	112	14.8536

#DB
((((((((	chr10:135096477-135096774(-)$1	1	98	106	19.6097
(((.((((	chr19:39963604-39963853(+)$1	1	20	28	16.3170
...)).))	chr1:156518062-156518322(-)$1	1	135	143	16.0731
((((.(((	chr3:49135325-49135573(-)$1	1	12	20	19.6097
)...))..	chr16:89967045-89967281(+)$1	1	77	85	16.9268
(((((((.	chr10:101606737-101606984(+)$1	1	92	100	16.3170
(((((..(	chr14:105239287-105239530(-)$1	1	11	19	13.1463
...))).)	chrX:153668579-153668850(+)$1	1	156	164	14.9756
.(((.((.	chr7:5662383-5662671(-)$1	1	3	11	14.9756
.(((...(	chr16:2580125-2580405(+)$1	1	158	166	19.6097
.(((((.(	chr6:30890128-30890393(+)$1	1	83	91	16.9268
..(((..(	chr19:10940798-10941160(+)$1	1	145	153	15.8292
)).)))).	chr11:62458158-62458439(-)$1	1	206	214	16.6829
.(((...(	chr17:40265708-40265961(-)$1	1	2	10	13.1463
.)))..))	chr11:18010047-18010330(-)$1	1	92	100	16.6829
((((((((	chr21:47556729-47556947(-)$1	1	1	9	12.7804
))))))).	chr9:140137815-140138111(+)$1	1	246	254	16.3170
))))).))	chr14:105239487-105239780(-)$1	1	205	213	15.0975
))...(((	chr22:31496859-31497138(+)$1	1	69	77	15.8292
(((.....	chr6:170002216-170002506(-)$1	1	78	86	16.9268
..((...(	chr14:24028767-24029072(-)$1	1	90	98	15.0975
(((((...	chr5:176885998-176886335(-)$1	1	281	289	16.0731
))))))))	chr15:42139847-42140110(+)$1	1	249	257	16.0731
.....)))	chr11:726617-726835(+)$1	1	123	131	16.6829
((((..((	chr20:2845136-2845400(+)$1	1	39	47	19.6097
.......)	chr17:4447780-4448041(-)$1	1	28	36	16.9268
((((((..	chr1:110173254-110173506(+)$1	1	172	180	19.6097
...)))))	chr8:145620103-145620338(-)$1	1	129	137	15.0975
.....)))	chr11:726569-726800(+)$1	1	171	179	16.6829
))..))))	chr12:120572343-120572582(-)$1	1	71	79	16.6829
)...((((	chr21:47558423-47558644(-)$1	1	35	43	19.6097
...)).))	chr9:35736975-35737303(-)$1	1	179	187	16.3170
(((...((	chr21:46917427-46917649(+)$1	1	39	47	16.9268
...)))))	chr1:113242981-113243226(+)$1	1	191	199	19.6097
((.(((((	chr20:61460714-61460938(+)$1	1	10	18	19.6097
((.....)	chr1:40766934-40767151(-)$1	1	108	116	15.8292
)))))).(	chr20:25176266-25176528(+)$1	1	55	63	16.3170
(((((((.	chr7:73010958-73011178(-)$1	1	163	171	15.0975
((((((((	chr16:89812939-89813196(-)$1	1	113	121	15.8292
(......)	chr16:88719650-88719916(-)$1	1	26	34	15.0975
(.(((..(	chr12:58009519-58009800(+)$1	1	104	112	14.8536

#PSSM
C : 0.92	c : 0.04	G : 0.02	
C : 0.92	c : 0.02	U : 0.02	u : 0.02	
U : 0.75	A : 0.14	G : 0.04	u : 0.04	
G : 0.68	C : 0.14	U : 0.12	c : 0.02	g : 0.02	
C : 0.78	G : 0.09	U : 0.04	A : 0.04	c : 0.02	
C : 0.90	G : 0.02	A : 0.02	U : 0.02	c : 0.02	
U : 0.97	u : 0.02	
G : 0.92	U : 0.02	C : 0.02	g : 0.02	

#score	677.414634146342
#seq	41
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_transcript_m2_run2.nuc.txt

#NT
ACUUAAGUCUCCAGAUACAGUUCUAGAGUAGGGAUAAGAAUCUGAUAAUGGUUAAAUGAUAUGAUUCUGAUUAAUUGCUUGUGCUGUUCAGGUUUGAUGAUCGUGGACGGAGUGAUUACGAUGGCAUUGGCAGCCGUGGUGACAGAAGUGGCUUUGGCAAAUUUGAACGUGGUGGAAACAGUCGCUGGUGUGACAAAUCAGAUGAAGAUGAUUGGUCAAAACCACUCCCACCAAGUGAACGCUUGGAACAGUAAGUUUUUGAAGUGUAUGUUACUUGUGAUGAAGCC	chrX:41201592-41201965(+)$1	373	64	351	356.0000

#otherMatches

#Struct PSSM
CC{FFFFFFKKCCCBBPPPPPPPBB{DDDD{BB{EEEEEKKCCC{EEEEEKKEEEEE::::::ccc[ccc"""eeeeeeeeeevvvvvvvvvvvvveeeee]eeeee333ccc]ccca!!cccbb!!bb[iiiiiiiii!!bboooooobb22iiiiiiiii22bb22bb]ccc22a:::EEEEEYYEEEEE}CCCZZZEEEEE}BBYYDDDD}BB\\\\\\\\\BB}CCCFFFFFF}CCC}BB::::::::::ccc[ccc!!ffffff!!bb[ffffffrrrrrrr	chr7:99621636-99621959(+)$1	323	5	292	356.0000
f55555ccc22ccc333ggggggg]dddd:::::::ffffff!!bb[bboooooobb]bb22ffffff:::hhhhhhhh####gggggggddddmmmmdddd]ggggggghhhhhhhha[eeeeepppppppeeeee]aGGGGGGGZZZFFFFFFCCC::::::::::ddddbbmmmmbb]dddddddd[dddd[eeeeeqqqqqqqqeeeee]dddd22dddd::::ccc[ffffffffffffeeeeennnnneeeee22ffffff333ffffffccc:::::CCC	chrX:41201592-41201965(+)$1	373	64	351	356.0000

#DB
((.((((((..(((((.......((.((((.((.(((((..(((.(((((..(((((......(((.(((...((((((((((.............))))).)))))...))).)))(..(((((..((.(((((((((..((......))..)))))))))..))..)).)))..)...)))))..))))).)))...))))).))..)))).)).........)).))))))))).))).))..........(((.(((..((((((..((.((((((.......	chr7:99621636-99621959(+)$1	1	5	292	356.0000
).....)))..)))...))))))).)))).......((((((..((.((......)).))..))))))...((((((((....(((((((((((....)))).)))))))))))))))(.(((((.......))))).))))))))...))))))(((..........((((((....)).))))((((.((((.(((((........))))).))))..))))....(((.(((((((((((((((((.....)))))..))))))...))))))))).....)))	chrX:41201592-41201965(+)$1	1	64	351	356.0000

#PSSM
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	A : 0.50	
U : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
U : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	

#score	712.0
#seq	2
#width	287
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_transcript_m1_run1.nuc.txt

#NT
CUUCUCUUCUUUU	chr6:116473757-116474069(+)$1	312	89	102	18.9074
cuuuguuucuuuc	chr2:20919660-20919964(-)$1	304	66	79	21.0370
ccuuuuuucuugg	chr11:116928673-116928914(-)$1	241	117	130	16.4074
GUUUGUUUCUUUU	chr17:56489124-56489403(-)$1	279	188	201	20.8518
auuuuuuuuuuuu	chr20:18272286-18272508(+)$1	222	66	79	20.3888
UUUCUUUUGUUUG	chr5:130888635-130888910(-)$1	275	222	235	16.9629
ucuuuuuuccuuc	chr17:60608352-60608652(+)$1	300	192	205	17.1481
cuuuuuuucuuuc	chr11:70595774-70596011(-)$1	237	84	97	24.7407
gucuucuucuuuc	chr2:39557524-39557767(-)$1	243	125	138	16.4999
UCUUUGUUCUUUU	chr20:3134531-3134954(-)$1	423	303	316	19.1851
UUUUUUUUCUUUU	chr15:85567545-85567807(+)$1	262	236	249	26.6851
uuuuuuuucuuuu	chr22:28907658-28907911(-)$1	253	89	102	26.6851
uugauuuucuuug	chr13:51140202-51140440(+)$1	238	115	128	17.4259
UUUUUUUUCUCUG	chr3:47172107-47172353(-)$1	246	79	92	20.8518
UUCUUUUUCUUCA	chr14:31408486-31408772(-)$1	286	80	93	17.4259
UCUUUUUUCUUUC	chr20:56976353-56976615(+)$1	262	100	113	21.7777
cuuucuuucuuuc	chr6:24326242-24326498(-)$1	256	179	192	21.0370
cuuuuuuuuuuuu	chr2:240925287-240925562(-)$1	275	211	224	21.7777
uucuguuucuuua	chr6:24193072-24193339(-)$1	267	74	87	17.7962
cucuuuuucuuug	chr1:246916242-246916587(+)$1	345	98	111	21.2222
aguuauuucuuuu	chr14:68492508-68492750(+)$1	242	91	104	17.1481
uauuuuuucuguu	chr1:92746905-92747203(-)$1	298	71	84	18.8148
aucuuuuucuuuc	chr8:26171920-26172193(+)$1	273	54	67	20.2962
UUCUUUUUCUUCA	chr4:139976985-139977279(-)$1	294	134	147	17.4259
cuuuuuuucuuuc	chr11:75830266-75830532(+)$1	266	107	120	24.7407
cuuuugugcuuuu	chr12:79970201-79970462(-)$1	261	34	47	17.7037
uuguuuuucuuuu	chr1:162074819-162075073(+)$1	254	93	106	23.3518
uguuuuuucuuug	chr15:56503326-56503570(-)$1	244	65	78	21.1296
guuuuauucuuuu	chr4:66870544-66870836(+)$1	292	104	117	20.4814
cauuuuuccuuuc	chr2:32222610-32222866(-)$1	256	99	112	16.5925
uuucuuuuccuuu	chr18:6319826-6320094(-)$1	268	247	260	18.4444
CUGUUUUUCUCUG	chr2:85547099-85547342(-)$1	243	43	56	16.9629
UUUuuuuucucuc	chr5:36224005-36224267(-)$1	262	234	247	21.3148
uuuuguuucuuuu	chr7:7242747-7243042(+)$1	295	72	85	22.9814
UUUUAUUUCUUUU	chr17:53363329-53363650(+)$1	321	307	320	22.7962
UUUUUUUUCUUUU	chr3:24477559-24477810(-)$1	251	81	94	26.6851
cuauuuuucuuua	chr12:11267384-11267636(-)$1	252	69	82	20.5740
CUUCUUUUCUAUU	chr19:19498431-19498788(+)$1	357	108	121	18.2592
auguuuuuguuuu	chr6:38097273-38097581(+)$1	308	98	111	17.1481
cuuucucucuuuc	chr10:124146443-124146716(+)$1	273	130	143	16.3148
cuuucuuucuuuc	chr1:232048464-232048819(+)$1	355	26	39	21.0370
cuugucuucuuug	chr4:2001029-2001298(-)$1	269	26	39	16.6851
uuuuuuugcuguu	chr9:5780260-5780598(-)$1	338	75	88	18.0740
uuuguuuuguuuu	chr4:107006004-107006246(-)$1	242	122	135	18.4444
uuuucuuucuuuc	chr16:23145757-23146036(-)$1	279	8	21	21.5925
cuuuuugucuuau	chr11:14723571-14723821(+)$1	250	93	106	17.0555
ucucuuuucuuuu	chr9:107634084-107634336(-)$1	252	233	246	19.5555
UUAUUUUUCUCUU	chr4:113164250-113164535(+)$1	285	189	202	19.2777
cucuuuuucuuuu	chr13:34420956-34421191(+)$1	235	82	95	23.0740
CAUUUUUUCUUCU	chr10:5817502-5817736(-)$1	234	36	49	18.3518
uguuucuucuuua	chr2:167069935-167070181(-)$1	246	89	102	17.2407
auauuuuccuuuu	chr2:173444545-173444800(+)$1	255	0	13	16.8703
UUUuucuucuucu	chr3:149353135-149353458(-)$1	323	9	22	18.9999

#otherMatches

#Struct PSSM
=========>>>>	chr18:2723558-2723804(+)$1	246	91	104	18.9074
4gggggggHHHHH	chr6:116473757-116474069(+)$1	312	89	102	18.9074
FFF::::::::::	chr2:20919660-20919964(-)$1	304	66	79	21.0370
>>>>>>>>=====	chr11:116928673-116928914(-)$1	241	117	130	16.4074
fffffuuuuuuuu	chr17:56489124-56489403(-)$1	279	188	201	20.8518
c>>>>>>>>>>>>	chr20:18272286-18272508(+)$1	222	66	79	20.3888
qqqqqqqq=====	chr5:130888635-130888910(-)$1	275	222	235	16.9629
eee4444cccccc	chr17:60608352-60608652(+)$1	300	192	205	17.1481
^^^^^^^^^^^^^	chr11:70595774-70596011(-)$1	237	84	97	24.7407
d>>>>>>>>>>>>	chr2:39557524-39557767(-)$1	243	125	138	16.4999
99999dddd::dd	chr20:3134531-3134954(-)$1	423	303	316	19.1851
ZCCC}FFFFFF::	chr15:85567545-85567807(+)$1	262	236	249	26.6851
+++++++++++++	chr22:28907658-28907911(-)$1	253	89	102	26.6851
3ggggggg4444c	chr13:51140202-51140440(+)$1	238	115	128	17.4259
^^^^^^^^^^^bb	chr3:47172107-47172353(-)$1	246	79	92	20.8518
:::::::::::::	chr14:31408486-31408772(-)$1	286	80	93	17.4259
:::::::::::::	chr20:56976353-56976615(+)$1	262	100	113	21.7777
:::::::::::::	chr6:24326242-24326498(-)$1	256	179	192	21.0370
ff:::::::::::	chr2:240925287-240925562(-)$1	275	211	224	21.7777
ee[bboooooobb	chr6:24193072-24193339(-)$1	267	74	87	17.7962
^^^^^^^^^^^^c	chr1:246916242-246916587(+)$1	345	98	111	21.2222
=++++++++++++	chr14:68492508-68492750(+)$1	242	91	104	17.1481
dd[bbqqqqqqqq	chr1:92746905-92747203(-)$1	298	71	84	18.8148
fffff))))))))	chr8:26171920-26172193(+)$1	273	54	67	20.2962
bxxxxxxxxxxxx	chr4:139976985-139977279(-)$1	294	134	147	17.4259
:::::::::::::	chr11:75830266-75830532(+)$1	266	107	120	24.7407
::::::CCCKKFF	chr12:79970201-79970462(-)$1	261	34	47	17.7037
eeeeeqqqqqqqq	chr1:162074819-162075073(+)$1	254	93	106	23.3518
!bb####bb!!a[	chr15:56503326-56503570(-)$1	244	65	78	21.1296
>>>>>>>>>gggg	chr4:66870544-66870836(+)$1	292	104	117	20.4814
BBKKIIIIIIIII	chr2:32222610-32222866(-)$1	256	99	112	16.5925
]eeeeeDDDDYYD	chr18:6319826-6320094(-)$1	268	247	260	18.4444
2dddd22ccc22f	chr2:85547099-85547342(-)$1	243	43	56	16.9629
eeee]ggggggg6	chr5:36224005-36224267(-)$1	262	234	247	21.3148
eeeeedddd!!ee	chr7:7242747-7243042(+)$1	295	72	85	22.9814
:::::::::::::	chr17:53363329-53363650(+)$1	321	307	320	22.7962
::::::::fffff	chr3:24477559-24477810(-)$1	251	81	94	26.6851
cccqqqqqqqqcc	chr12:11267384-11267636(-)$1	252	69	82	20.5740
88888dddd0000	chr19:19498431-19498788(+)$1	357	108	121	18.2592
::::eeeeeoooo	chr6:38097273-38097581(+)$1	308	98	111	17.1481
xxxxxxxxxxxee	chr10:124146443-124146716(+)$1	273	130	143	16.3148
:::::::::::::	chr1:232048464-232048819(+)$1	355	26	39	21.0370
::::::::fffff	chr4:2001029-2001298(-)$1	269	26	39	16.6851
qqqqqqqdddd44	chr9:5780260-5780598(-)$1	338	75	88	18.0740
d!!ggggggg+++	chr4:107006004-107006246(-)$1	242	122	135	18.4444
oodddd:::::::	chr16:23145757-23146036(-)$1	279	8	21	21.5925
dnnnnndddd:::	chr11:14723571-14723821(+)$1	250	93	106	17.0555
\\\\\\\\\GGGG	chr9:107634084-107634336(-)$1	252	233	246	19.5555
:::::::::::::	chr4:113164250-113164535(+)$1	285	189	202	19.2777
:::::::::::::	chr13:34420956-34421191(+)$1	235	82	95	23.0740
[aqqqqqqqqa]d	chr10:5817502-5817736(-)$1	234	36	49	18.3518
sssffffff::::	chr2:167069935-167070181(-)$1	246	89	102	17.2407
::::::ggggggg	chr2:173444545-173444800(+)$1	255	0	13	16.8703
:::::::::::::	chr3:149353135-149353458(-)$1	323	9	22	18.9999

#DB
)))))))))....	chr18:2723558-2723804(+)$1	1	91	104	18.9074
.)))))))(((((	chr6:116473757-116474069(+)$1	1	89	102	18.9074
(((..........	chr2:20919660-20919964(-)$1	1	66	79	21.0370
........)))))	chr11:116928673-116928914(-)$1	1	117	130	16.4074
(((((........	chr17:56489124-56489403(-)$1	1	188	201	20.8518
)............	chr20:18272286-18272508(+)$1	1	66	79	20.3888
........)))))	chr5:130888635-130888910(-)$1	1	222	235	16.9629
)))....)))(((	chr17:60608352-60608652(+)$1	1	192	205	17.1481
.............	chr11:70595774-70596011(-)$1	1	84	97	24.7407
)............	chr2:39557524-39557767(-)$1	1	125	138	16.4999
.....))))..((	chr20:3134531-3134954(-)$1	1	303	316	19.1851
.))).))))))..	chr15:85567545-85567807(+)$1	1	236	249	26.6851
.............	chr22:28907658-28907911(-)$1	1	89	102	26.6851
.)))))))....)	chr13:51140202-51140440(+)$1	1	115	128	17.4259
...........))	chr3:47172107-47172353(-)$1	1	79	92	20.8518
.............	chr14:31408486-31408772(-)$1	1	80	93	17.4259
.............	chr20:56976353-56976615(+)$1	1	100	113	21.7777
.............	chr6:24326242-24326498(-)$1	1	179	192	21.0370
))...........	chr2:240925287-240925562(-)$1	1	211	224	21.7777
((.((......))	chr6:24193072-24193339(-)$1	1	74	87	17.7962
............)	chr1:246916242-246916587(+)$1	1	98	111	21.2222
(............	chr14:68492508-68492750(+)$1	1	91	104	17.1481
((.((........	chr1:92746905-92747203(-)$1	1	71	84	18.8148
(((((........	chr8:26171920-26172193(+)$1	1	54	67	20.2962
(............	chr4:139976985-139977279(-)$1	1	134	147	17.4259
.............	chr11:75830266-75830532(+)$1	1	107	120	24.7407
......(((..((	chr12:79970201-79970462(-)$1	1	34	47	17.7037
(((((........	chr1:162074819-162075073(+)$1	1	93	106	23.3518
.((....((..(.	chr15:56503326-56503570(-)$1	1	65	78	21.1296
.........))))	chr4:66870544-66870836(+)$1	1	104	117	20.4814
((..(((((((((	chr2:32222610-32222866(-)$1	1	99	112	16.5925
.)))))))))..)	chr18:6319826-6320094(-)$1	1	247	260	18.4444
.))))..)))..)	chr2:85547099-85547342(-)$1	1	43	56	16.9629
)))).))))))).	chr5:36224005-36224267(-)$1	1	234	247	21.3148
(((((((((..((	chr7:7242747-7243042(+)$1	1	72	85	22.9814
.............	chr17:53363329-53363650(+)$1	1	307	320	22.7962
........(((((	chr3:24477559-24477810(-)$1	1	81	94	26.6851
(((........))	chr12:11267384-11267636(-)$1	1	69	82	20.5740
.....))))....	chr19:19498431-19498788(+)$1	1	108	121	18.2592
....(((((....	chr6:38097273-38097581(+)$1	1	98	111	17.1481
...........))	chr10:124146443-124146716(+)$1	1	130	143	16.3148
.............	chr1:232048464-232048819(+)$1	1	26	39	21.0370
........(((((	chr4:2001029-2001298(-)$1	1	26	39	16.6851
.......))))..	chr9:5780260-5780598(-)$1	1	75	88	18.0740
(..(((((((...	chr4:107006004-107006246(-)$1	1	122	135	18.4444
..)))).......	chr16:23145757-23146036(-)$1	1	8	21	21.5925
(.....))))...	chr11:14723571-14723821(+)$1	1	93	106	17.0555
.........))))	chr9:107634084-107634336(-)$1	1	233	246	19.5555
.............	chr4:113164250-113164535(+)$1	1	189	202	19.2777
.............	chr13:34420956-34421191(+)$1	1	82	95	23.0740
.(........).)	chr10:5817502-5817736(-)$1	1	36	49	18.3518
...))))))....	chr2:167069935-167070181(-)$1	1	89	102	17.2407
......(((((((	chr2:173444545-173444800(+)$1	1	0	13	16.8703
.............	chr3:149353135-149353458(-)$1	1	9	22	18.9999

#PSSM
c : 0.29	u : 0.25	U : 0.22	a : 0.09	C : 0.07	g : 0.03	G : 0.01	
u : 0.53	U : 0.25	c : 0.05	g : 0.05	C : 0.03	a : 0.03	A : 0.01	
u : 0.49	U : 0.24	c : 0.09	g : 0.05	C : 0.03	a : 0.03	G : 0.01	A : 0.01	
u : 0.61	U : 0.22	c : 0.05	C : 0.05	g : 0.03	a : 0.01	
u : 0.57	U : 0.24	c : 0.07	g : 0.05	G : 0.01	a : 0.01	A : 0.01	
u : 0.59	U : 0.24	c : 0.09	C : 0.01	G : 0.01	g : 0.01	a : 0.01	
u : 0.68	U : 0.27	c : 0.01	g : 0.01	
u : 0.64	U : 0.27	g : 0.03	c : 0.03	
c : 0.64	C : 0.25	u : 0.03	g : 0.03	G : 0.01	
u : 0.68	U : 0.27	c : 0.03	
u : 0.66	U : 0.20	C : 0.05	g : 0.03	c : 0.01	A : 0.01	
u : 0.66	U : 0.22	C : 0.05	g : 0.01	a : 0.01	c : 0.01	
u : 0.35	c : 0.22	U : 0.16	g : 0.09	G : 0.05	a : 0.05	A : 0.03	C : 0.01	

#score	1069.1481481481478
#seq	54
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_transcript_m2_run1.nuc.txt

#NT
gggccgcgggcgaggcggccgaggggcccgggaucgcgcgggugcgggcugcgcuaggcgggcgcgggcggcggcgggucggaaccgcgccgagggccgggcgggccgcggggccgggcggcgcggcgggggcgggcggcgcggcccggggcauuccgggcggccagggggaggcggcgagcccggggagguggggagcagagcggGGAUCGGGGUUUGCUCCGGGGGCCGGCGGGCGAUUGGGGCCAGGCGGGGAAAAGGGGGGAUgggggccgcccuccgggggggucggggccgccgccgccgUCGU	chr12:7037106-7037458(+)$1	352	8	318	515.0000

#otherMatches

#Struct PSSM
=!!cccxxxxxxxxxxxxxxxccc22==========::ffffff[accc!!ddddbboooooobb]dddd]ccc22a]ffffff:DDDDJJJJJJJJJJ::ffffff[a[a[ammmma]a]a]ffffff:ccc[ffffff[eeeee"""ccc[dddd!!ggggggg[ddddllldddd22ggggggg22dddd]ccc22eeeee]ffffff]cccJJJJJJJJJJ}DDDDdddd!!dddd[ffffff[ffffffbbeeeee[a[bbmmmmbb]aeeeee]bb]ffffff]ffffff]dddd22dddd:::	chr18:51750584-51750903(-)$1	319	9	319	515.0000
{DDDD{CCC{AMMMMCCCCCCLLLEEEEEKKFFFFFF{BB::ccc[a[gggggggnnnnnggggggg]a]cccddddpppppppddddccc!!ffffff[bb[a[dddd"""dddd[allla]dddd4444dddd]a]bb]ffffff22ccc::ggggggg[cccssssssssssccc22ggggggg::ccc!!hhhhhhhh[arrrrrrrrra]hhhhhhhh4444ccc::BB}FFFFFF}EEEEEZZZCCC:::::dddd[bbpppppppbb]ddddCCC~~~~A}CCC}DDDD}EEEEEccc[bbee	chr12:7037106-7037458(+)$1	352	8	318	515.0000

#DB
(..(((...............)))..))))))))))..((((((.((((..((((((......)).)))).)))..).)))))).((((((((((((((..((((((.(.(.(....).).).)))))).(((.((((((.(((((...(((.((((..(((((((.((((...))))..)))))))..)))).)))..))))).)))))).))))))))))))).))))((((..((((.((((((.(((((((((((((.(.((....)).)))))).)).)))))).)))))).))))..))))...	chr18:51750584-51750903(-)$1	1	9	319	515.0000
.((((.(((.(....((((((...(((((..((((((.((..(((.(.(((((((.....))))))).).)))((((.......))))(((..((((((.((.(.((((...((((.(...).))))....)))).).)).))))))..)))..(((((((.(((..........)))..)))))))..(((..((((((((.(.........).))))))))....)))..)).)))))).)))))...))).....((((.((.......)).)))))))....).))).)))).)))))(((.((((	chr12:7037106-7037458(+)$1	1	8	318	515.0000

#PSSM
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	u : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	u : 0.50	
A : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	u : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
U : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	u : 0.50	
A : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	a : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	a : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	c : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	u : 0.50	
U : 0.50	u : 0.50	
G : 0.50	c : 0.50	
G : 0.50	c : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
C : 0.50	c : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	c : 0.50	
C : 0.50	c : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
g : 1.00	
g : 0.50	a : 0.50	
c : 0.50	g : 0.50	
c : 0.50	g : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 1.00	
g : 1.00	
c : 0.50	g : 0.50	
c : 0.50	a : 0.50	
g : 1.00	
g : 0.50	c : 0.50	
g : 0.50	a : 0.50	
g : 1.00	
c : 0.50	a : 0.50	
c : 0.50	g : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
g : 1.00	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	U : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	U : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
c : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	G : 0.50	
c : 0.50	A : 0.50	
g : 0.50	U : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	C : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	U : 0.50	
c : 0.50	g : 0.50	
a : 0.50	g : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
g : 1.00	
g : 0.50	c : 0.50	
c : 1.00	
c : 0.50	g : 0.50	
u : 0.50	c : 0.50	
u : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
c : 1.00	
g : 0.50	c : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
g : 1.00	
a : 0.50	g : 0.50	
c : 0.50	g : 0.50	
g : 1.00	
g : 1.00	
c : 0.50	u : 0.50	
g : 0.50	c : 0.50	
g : 1.00	
c : 0.50	g : 0.50	
g : 1.00	
g : 1.00	
c : 1.00	
u : 0.50	c : 0.50	
g : 1.00	
c : 1.00	
g : 0.50	c : 0.50	
g : 1.00	
c : 1.00	
g : 0.50	c : 0.50	
g : 1.00	
c : 1.00	
g : 0.50	c : 0.50	
g : 1.00	
c : 0.50	U : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	

#score	1030.0
#seq	2
#width	310
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_CDS_m1_run1.nuc.txt

#NT
CUUGCUUU	chr2:186661575-186661861(-)$1	286	136	144	15.3207
UUUUCUUU	chr2:186658456-186658721(-)$1	265	13	21	16.9245
UUUUCUUU	chr2:186658299-186658542(-)$1	243	49	57	16.9245
CUUUAUUU	chr2:179432051-179432307(+)$1	256	78	86	15.7924
CUUUCUAU	chr6:132030758-132031014(+)$1	256	94	102	15.2264
CAUUCUUU	chr2:179432273-179432494(+)$1	221	83	91	15.1320
CUUCCUUU	chr2:186661167-186661443(-)$1	276	60	68	15.6037
UUUUCUUU	chr19:45912055-45912311(-)$1	256	84	92	16.9245
CUUUCUGU	chr3:99567783-99568032(+)$1	249	156	164	15.2264
CUUCCUUU	chr6:132031092-132031344(+)$1	252	14	22	15.6037
CUUUCCUU	chr2:179417392-179417639(+)$1	247	23	31	15.3207
CUUUCUUU	chr2:179426268-179426528(+)$1	260	3	11	19.7547
CUGUCUUU	chr3:99569627-99569901(+)$1	274	118	126	15.6037
CUUUCCUU	chr2:179454384-179454690(+)$1	306	21	29	15.3207
cuuccuuu	chr2:32991435-32991698(+)$1	263	26	34	15.6037
cuuucuuu	chr2:97402831-97403074(-)$1	243	212	220	19.7547
cuuuguuu	chr18:77690179-77690416(-)$1	237	27	35	15.8867
UUUUCUUU	chrX:71425610-71425910(+)$1	300	70	78	16.9245
CUUCCUUU	chr1:174417668-174417946(+)$1	278	104	112	15.6037
CUUUCUUU	chr3:99568969-99569228(+)$1	259	195	203	19.7547
CUUUCUUU	chr2:186657883-186658162(-)$1	279	234	242	19.7547
AUUUCUUU	chr2:186656533-186656769(-)$1	236	188	196	16.4528
CUUUCUCU	chr3:99568622-99568845(+)$1	223	165	173	15.3207
UUUUCUUU	chrX:71425472-71425737(+)$1	265	208	216	16.9245
AUUUCUUU	chr2:186656295-186656601(-)$1	306	20	28	16.4528
CUUUGUUU	chr2:186661395-186661610(-)$1	215	26	34	15.8867
CUUUUUUU	chrX:71426744-71426980(+)$1	236	33	41	15.9811
CUUUCUCU	chr3:99568744-99569040(+)$1	296	43	51	15.3207
UUUUCUUU	chr2:186658931-186659169(-)$1	238	59	67	16.9245
GUUUCUUU	chr7:141478740-141478990(+)$1	250	82	90	16.1698
CUUUUUUU	chr7:141478254-141478559(+)$1	305	278	286	15.9811
CUUUCUUC	chr2:179425562-179425812(+)$1	250	94	102	15.3207
UUUUCUUU	chr2:179427860-179428174(+)$1	314	82	90	16.9245
CUUUUUUU	chr7:141478447-141478727(+)$1	280	85	93	15.9811
CUUUCUUC	chr2:179427441-179427669(+)$1	228	76	84	15.3207
CUUUCUUC	chr2:186659698-186659961(-)$1	263	207	215	15.3207
CUUUUUUU	chr7:141478527-141478762(+)$1	235	5	13	15.9811
UUUUCUUU	chr2:179429451-179429698(+)$1	247	66	74	16.9245
CUUUCUUU	chr2:179429209-179429458(+)$1	249	18	26	19.7547
AUUUCUUU	chr5:112228298-112228614(-)$1	316	87	95	16.4528
uuuucuuu	chr2:240909035-240909316(-)$1	281	31	39	16.9245
cugucuuu	chr15:49517295-49517548(+)$1	253	86	94	15.6037
CUGUCUUU	chr3:99568250-99568528(+)$1	278	189	197	15.6037
CUUUCUUU	chr2:179417091-179417332(+)$1	241	11	19	19.7547
CUUUCUUU	chr2:179422681-179422954(+)$1	273	79	87	19.7547
CUUUGUUU	chr2:179438544-179438817(+)$1	273	43	51	15.8867
CUGUCUUU	chr7:141464316-141464582(+)$1	266	108	116	15.6037
CAUUCUUU	chr2:179432154-179432421(+)$1	267	202	210	15.1320
AUUUCUUU	chr2:179432476-179432761(+)$1	285	73	81	16.4528
CUUUCUUU	chr2:186657691-186657988(-)$1	297	60	68	19.7547
CUUUAUUU	chrX:71426787-71427062(+)$1	275	247	255	15.7924
cuuuccuu	chr7:141464606-141464865(+)$1	259	60	68	15.3207

#otherMatches

#Struct PSSM
oooooeee	chr2:179438959-179439218(+)$1	259	6	14	15.3207
EEBBMMMM	chr2:186661575-186661861(-)$1	286	136	144	15.3207
fffffqqq	chr2:186658456-186658721(-)$1	265	13	21	16.9245
HHHHHJJJ	chr2:186658299-186658542(-)$1	243	49	57	16.9245
^^^^^^^^	chr2:179432051-179432307(+)$1	256	78	86	15.7924
iiiiiii[	chr6:132030758-132031014(+)$1	256	94	102	15.2264
wwwwwwwh	chr2:179432273-179432494(+)$1	221	83	91	15.1320
^^gggggg	chr2:186661167-186661443(-)$1	276	60	68	15.6037
==^^^^^^	chr19:45912055-45912311(-)$1	256	84	92	16.9245
CCYYBB::	chr3:99567783-99568032(+)$1	249	156	164	15.2264
CCCBBKKB	chr6:132031092-132031344(+)$1	252	14	22	15.6037
c"""ccc!	chr2:179417392-179417639(+)$1	247	23	31	15.3207
::::::::	chr2:179426268-179426528(+)$1	260	3	11	19.7547
nndddd33	chr3:99569627-99569901(+)$1	274	118	126	15.6037
::::gggg	chr2:179454384-179454690(+)$1	306	21	29	15.3207
JJJJJJJJ	chr2:32991435-32991698(+)$1	263	26	34	15.6037
FF:::::e	chr2:97402831-97403074(-)$1	243	212	220	19.7547
qqqqqqqe	chr18:77690179-77690416(-)$1	237	27	35	15.8867
FFFFFeee	chrX:71425610-71425910(+)$1	300	70	78	16.9245
>>>>>>>>	chr1:174417668-174417946(+)$1	278	104	112	15.6037
xxxxxxxx	chr3:99568969-99569228(+)$1	259	195	203	19.7547
^^^^^^^^	chr2:186657883-186658162(-)$1	279	234	242	19.7547
33eeeee]	chr2:186656533-186656769(-)$1	236	188	196	16.4528
ff]bb:::	chr3:99568622-99568845(+)$1	223	165	173	15.3207
???CCCZZ	chrX:71425472-71425737(+)$1	265	208	216	16.9245
ddpppppp	chr2:186656295-186656601(-)$1	306	20	28	16.4528
ddqqqqqq	chr2:186661395-186661610(-)$1	215	26	34	15.8867
c$$$$$dd	chrX:71426744-71426980(+)$1	236	33	41	15.9811
ff]bb:::	chr3:99568744-99569040(+)$1	296	43	51	15.3207
eeeooooo	chr2:186658931-186659169(-)$1	238	59	67	16.9245
ddeeeeee	chr7:141478740-141478990(+)$1	250	82	90	16.1698
]iiiiiii	chr7:141478254-141478559(+)$1	305	278	286	15.9811
::::::::	chr2:179425562-179425812(+)$1	250	94	102	15.3207
fff:::::	chr2:179427860-179428174(+)$1	314	82	90	16.9245
]=======	chr7:141478447-141478727(+)$1	280	85	93	15.9811
ccc!!fff	chr2:179427441-179427669(+)$1	228	76	84	15.3207
eee]dddd	chr2:186659698-186659961(-)$1	263	207	215	15.3207
BBOOOOOO	chr7:141478527-141478762(+)$1	235	5	13	15.9811
::FFFFFF	chr2:179429451-179429698(+)$1	247	66	74	16.9245
rrrrrrrr	chr2:179429209-179429458(+)$1	249	18	26	19.7547
dd[cccnn	chr5:112228298-112228614(-)$1	316	87	95	16.4528
JJJJJJJJ	chr2:240909035-240909316(-)$1	281	31	39	16.9245
dddwwwww	chr15:49517295-49517548(+)$1	253	86	94	15.6037
CCC?????	chr3:99568250-99568528(+)$1	278	189	197	15.6037
eepppppp	chr2:179417091-179417332(+)$1	241	11	19	19.7547
:::::::g	chr2:179422681-179422954(+)$1	273	79	87	19.7547
mmmmeeee	chr2:179438544-179438817(+)$1	273	43	51	15.8867
rrrrrrre	chr7:141464316-141464582(+)$1	266	108	116	15.6037
wwwwwwwh	chr2:179432154-179432421(+)$1	267	202	210	15.1320
::::::::	chr2:179432476-179432761(+)$1	285	73	81	16.4528
^^^^^^^^	chr2:186657691-186657988(-)$1	297	60	68	19.7547
@@@@@@@@	chrX:71426787-71427062(+)$1	275	247	255	15.7924
8dddd666	chr7:141464606-141464865(+)$1	259	60	68	15.3207

#DB
.....)))	chr2:179438959-179439218(+)$1	1	6	14	15.3207
((((....	chr2:186661575-186661861(-)$1	1	136	144	15.3207
(((((...	chr2:186658456-186658721(-)$1	1	13	21	16.9245
((((((((	chr2:186658299-186658542(-)$1	1	49	57	16.9245
........	chr2:179432051-179432307(+)$1	1	78	86	15.7924
(((((((.	chr6:132030758-132031014(+)$1	1	94	102	15.2264
.......)	chr2:179432273-179432494(+)$1	1	83	91	15.1320
..))))))	chr2:186661167-186661443(-)$1	1	60	68	15.6037
((......	chr19:45912055-45912311(-)$1	1	84	92	16.9245
))..))..	chr3:99567783-99568032(+)$1	1	156	164	15.2264
(((((..(	chr6:132031092-132031344(+)$1	1	14	22	15.6037
(...(((.	chr2:179417392-179417639(+)$1	1	23	31	15.3207
........	chr2:179426268-179426528(+)$1	1	3	11	19.7547
..))))..	chr3:99569627-99569901(+)$1	1	118	126	15.6037
....((((	chr2:179454384-179454690(+)$1	1	21	29	15.3207
((((((((	chr2:32991435-32991698(+)$1	1	26	34	15.6037
)).....(	chr2:97402831-97403074(-)$1	1	212	220	19.7547
.......)	chr18:77690179-77690416(-)$1	1	27	35	15.8867
((((((((	chrX:71425610-71425910(+)$1	1	70	78	16.9245
........	chr1:174417668-174417946(+)$1	1	104	112	15.6037
........	chr3:99568969-99569228(+)$1	1	195	203	19.7547
........	chr2:186657883-186658162(-)$1	1	234	242	19.7547
..))))).	chr2:186656533-186656769(-)$1	1	188	196	16.4528
)).))...	chr3:99568622-99568845(+)$1	1	165	173	15.3207
...)))..	chrX:71425472-71425737(+)$1	1	208	216	16.9245
((......	chr2:186656295-186656601(-)$1	1	20	28	16.4528
((......	chr2:186661395-186661610(-)$1	1	26	34	15.8867
(.....((	chrX:71426744-71426980(+)$1	1	33	41	15.9811
)).))...	chr3:99568744-99569040(+)$1	1	43	51	15.3207
(((.....	chr2:186658931-186659169(-)$1	1	59	67	16.9245
))))))))	chr7:141478740-141478990(+)$1	1	82	90	16.1698
.)))))))	chr7:141478254-141478559(+)$1	1	278	286	15.9811
........	chr2:179425562-179425812(+)$1	1	94	102	15.3207
))).....	chr2:179427860-179428174(+)$1	1	82	90	16.9245
.)))))))	chr7:141478447-141478727(+)$1	1	85	93	15.9811
(((..(((	chr2:179427441-179427669(+)$1	1	76	84	15.3207
))).))))	chr2:186659698-186659961(-)$1	1	207	215	15.3207
((......	chr7:141478527-141478762(+)$1	1	5	13	15.9811
..((((((	chr2:179429451-179429698(+)$1	1	66	74	16.9245
........	chr2:179429209-179429458(+)$1	1	18	26	19.7547
((.(((..	chr5:112228298-112228614(-)$1	1	87	95	16.4528
((((((((	chr2:240909035-240909316(-)$1	1	31	39	16.9245
(((.....	chr15:49517295-49517548(+)$1	1	86	94	15.6037
))).....	chr3:99568250-99568528(+)$1	1	189	197	15.6037
((......	chr2:179417091-179417332(+)$1	1	11	19	19.7547
.......(	chr2:179422681-179422954(+)$1	1	79	87	19.7547
....))))	chr2:179438544-179438817(+)$1	1	43	51	15.8867
.......)	chr7:141464316-141464582(+)$1	1	108	116	15.6037
.......)	chr2:179432154-179432421(+)$1	1	202	210	15.1320
........	chr2:179432476-179432761(+)$1	1	73	81	16.4528
........	chr2:186657691-186657988(-)$1	1	60	68	19.7547
........	chrX:71426787-71427062(+)$1	1	247	255	15.7924
.))))...	chr7:141464606-141464865(+)$1	1	60	68	15.3207

#PSSM
C : 0.64	U : 0.15	c : 0.09	A : 0.07	G : 0.01	u : 0.01	
U : 0.84	u : 0.11	A : 0.03	
U : 0.81	u : 0.09	G : 0.05	C : 0.01	g : 0.01	
U : 0.81	u : 0.09	C : 0.05	G : 0.01	c : 0.01	
C : 0.73	c : 0.09	U : 0.07	A : 0.03	G : 0.03	g : 0.01	
U : 0.84	u : 0.09	C : 0.03	c : 0.01	
U : 0.81	u : 0.11	C : 0.03	A : 0.01	G : 0.01	
U : 0.83	u : 0.11	C : 0.05	

#score	874.2641509433961
#seq	53
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_CDS_m3_run1.nuc.txt

#NT
CUCUG	chr10:106022648-106022892(+)$1	244	78	83	14.9999
CUCUG	chr6:7581097-7581381(+)$1	284	10	15	14.9999
CUCUG	chr11:102094242-102094503(+)$1	261	25	30	14.9999
CUCUG	chr8:145140328-145140612(+)$1	284	125	130	14.9999
CUCUG	chr8:125580640-125580912(-)$1	272	120	125	14.9999
cucug	chr5:95236265-95236497(-)$1	232	161	166	14.9999
CUCUG	chr13:20608244-20608524(+)$1	280	268	273	14.9999
CUCUG	chr5:176737553-176737854(-)$1	301	8	13	14.9999
CUCUG	chr15:70388479-70388772(-)$1	293	114	119	14.9999
CUCUG	chr12:80083691-80083955(-)$1	264	100	105	14.9999
CUCUG	chr6:31929217-31929433(+)$1	216	64	69	14.9999
CUCUG	chr5:1078003-1078309(-)$1	306	108	113	14.9999
CUCUG	chr12:121764790-121765091(-)$1	301	160	165	14.9999
CUCUG	chr5:891153-891447(-)$1	294	32	37	14.9999
CUCUG	chr3:42232935-42233182(+)$1	247	90	95	14.9999
CUCUG	chr14:105179628-105179896(+)$1	268	52	57	14.9999
CUCUG	chr1:155294924-155295216(+)$1	292	150	155	14.9999
CUCUG	chr14:23939130-23939434(+)$1	304	194	199	14.9999
CUCUG	chr14:35872756-35873018(-)$1	262	150	155	14.9999
CUCUG	chr9:117027600-117027804(+)$1	204	93	98	14.9999
CUCUG	chr17:42932181-42932469(-)$1	288	196	201	14.9999
CUCUG	chr9:116973167-116973395(+)$1	228	16	21	14.9999
CUCUG	chr2:3392269-3392578(+)$1	309	211	216	14.9999
CUCUG	chr1:155105919-155106164(+)$1	245	236	241	14.9999
CUCUG	chr12:120597929-120598157(-)$1	228	34	39	14.9999
CUCUG	chrX:118123210-118123528(+)$1	318	30	35	14.9999
CUCUG	chr17:63533807-63534091(-)$1	284	84	89	14.9999
CUCUG	chr3:49052298-49052531(+)$1	233	170	175	14.9999
CUCUG	chr9:96001937-96002180(+)$1	243	210	215	14.9999
CUCUG	chr1:1687937-1688205(-)$1	268	69	74	14.9999
CUCUG	chr19:54963730-54963942(+)$1	212	85	90	14.9999
CUCUG	chr8:25135995-25136312(+)$1	317	145	150	14.9999
CUCUG	chr19:5932406-5932665(-)$1	259	46	51	14.9999
CUCUG	chr15:40705129-40705445(+)$1	316	236	241	14.9999
CUCUG	chr5:95231191-95231437(-)$1	246	15	20	14.9999
CUCUG	chr2:74656998-74657243(-)$1	245	27	32	14.9999
CUCUG	chr17:18882020-18882310(-)$1	290	14	19	14.9999
CUCUG	chr20:60714841-60715061(-)$1	220	83	88	14.9999
CUCUG	chr11:62370196-62370479(-)$1	283	60	65	14.9999
CUCUG	chr16:3785927-3786223(-)$1	296	199	204	14.9999
CUCUG	chr16:16243953-16244185(-)$1	232	64	69	14.9999
CUCUG	chr11:117693226-117693502(-)$1	276	53	58	14.9999
CUCUG	chr3:10354253-10354575(-)$1	322	136	141	14.9999
CUCUG	chr3:184039680-184039977(+)$1	297	5	10	14.9999
CUCUG	chr18:56057718-56057993(+)$1	275	147	152	14.9999
CUCUG	chr12:133143949-133144196(+)$1	247	128	133	14.9999
CUCUG	chr16:708081-708336(+)$1	255	55	60	14.9999
CUCUG	chr9:139102933-139103228(-)$1	295	73	78	14.9999
CUCUG	chr17:27011590-27011847(+)$1	257	144	149	14.9999
CUCUG	chr1:145439740-145439966(+)$1	226	39	44	14.9999
CUCUG	chr6:167352271-167352532(-)$1	261	191	196	14.9999
CUCUG	chr9:130712567-130712812(-)$1	245	130	135	14.9999
CUCUG	chr12:49439747-49439979(-)$1	232	9	14	14.9999

#otherMatches

#Struct PSSM
PPPPF	chr20:61458495-61458743(+)$1	248	66	71	14.9999
dd22b	chr10:106022648-106022892(+)$1	244	78	83	14.9999
GGGGG	chr6:7581097-7581381(+)$1	284	10	15	14.9999
$$$$f	chr11:102094242-102094503(+)$1	261	25	30	14.9999
J~~~~	chr8:145140328-145140612(+)$1	284	125	130	14.9999
NJJJJ	chr8:125580640-125580912(-)$1	272	120	125	14.9999
f]ggg	chr5:95236265-95236497(-)$1	232	161	166	14.9999
:EEEE	chr13:20608244-20608524(+)$1	280	268	273	14.9999
meeee	chr5:176737553-176737854(-)$1	301	8	13	14.9999
b!!dd	chr15:70388479-70388772(-)$1	293	114	119	14.9999
22fff	chr12:80083691-80083955(-)$1	264	100	105	14.9999
eeeeb	chr6:31929217-31929433(+)$1	216	64	69	14.9999
::::F	chr5:1078003-1078309(-)$1	306	108	113	14.9999
::eee	chr12:121764790-121765091(-)$1	301	160	165	14.9999
ccc!!	chr5:891153-891447(-)$1	294	32	37	14.9999
22eee	chr3:42232935-42233182(+)$1	247	90	95	14.9999
ammmm	chr14:105179628-105179896(+)$1	268	52	57	14.9999
ffff2	chr1:155294924-155295216(+)$1	292	150	155	14.9999
fffff	chr14:23939130-23939434(+)$1	304	194	199	14.9999
GGGGB	chr14:35872756-35873018(-)$1	262	150	155	14.9999
GGGGG	chr9:117027600-117027804(+)$1	204	93	98	14.9999
eeeee	chr17:42932181-42932469(-)$1	288	196	201	14.9999
GLLLC	chr9:116973167-116973395(+)$1	228	16	21	14.9999
DDD:c	chr2:3392269-3392578(+)$1	309	211	216	14.9999
CC}CC	chr1:155105919-155106164(+)$1	245	236	241	14.9999
ggggn	chr12:120597929-120598157(-)$1	228	34	39	14.9999
ggguu	chrX:118123210-118123528(+)$1	318	30	35	14.9999
d]aff	chr17:63533807-63534091(-)$1	284	84	89	14.9999
qqqqq	chr3:49052298-49052531(+)$1	233	170	175	14.9999
eeeee	chr9:96001937-96002180(+)$1	243	210	215	14.9999
B{CCC	chr1:1687937-1688205(-)$1	268	69	74	14.9999
xxxxx	chr19:54963730-54963942(+)$1	212	85	90	14.9999
[cccl	chr8:25135995-25136312(+)$1	317	145	150	14.9999
llddd	chr19:5932406-5932665(-)$1	259	46	51	14.9999
ggggp	chr15:40705129-40705445(+)$1	316	236	241	14.9999
ddddf	chr5:95231191-95231437(-)$1	246	15	20	14.9999
:::JJ	chr2:74656998-74657243(-)$1	245	27	32	14.9999
EEEEf	chr17:18882020-18882310(-)$1	290	14	19	14.9999
::::c	chr20:60714841-60715061(-)$1	220	83	88	14.9999
ggggg	chr11:62370196-62370479(-)$1	283	60	65	14.9999
gggg:	chr16:3785927-3786223(-)$1	296	199	204	14.9999
iiiii	chr16:16243953-16244185(-)$1	232	64	69	14.9999
A{CCC	chr11:117693226-117693502(-)$1	276	53	58	14.9999
LLLDD	chr3:10354253-10354575(-)$1	322	136	141	14.9999
cccdd	chr3:184039680-184039977(+)$1	297	5	10	14.9999
fffff	chr18:56057718-56057993(+)$1	275	147	152	14.9999
4444f	chr12:133143949-133144196(+)$1	247	128	133	14.9999
cc22g	chr16:708081-708336(+)$1	255	55	60	14.9999
GGGGG	chr9:139102933-139103228(-)$1	295	73	78	14.9999
dd]bb	chr17:27011590-27011847(+)$1	257	144	149	14.9999
CCC{C	chr1:145439740-145439966(+)$1	226	39	44	14.9999
HHHHH	chr6:167352271-167352532(-)$1	261	191	196	14.9999
ppppb	chr9:130712567-130712812(-)$1	245	130	135	14.9999
ffacc	chr12:49439747-49439979(-)$1	232	9	14	14.9999

#DB
....(	chr20:61458495-61458743(+)$1	1	66	71	14.9999
))..)	chr10:106022648-106022892(+)$1	1	78	83	14.9999
(((((	chr6:7581097-7581381(+)$1	1	10	15	14.9999
....(	chr11:102094242-102094503(+)$1	1	25	30	14.9999
)....	chr8:145140328-145140612(+)$1	1	125	130	14.9999
.((((	chr8:125580640-125580912(-)$1	1	120	125	14.9999
).)))	chr5:95236265-95236497(-)$1	1	161	166	14.9999
.))))	chr13:20608244-20608524(+)$1	1	268	273	14.9999
.))))	chr5:176737553-176737854(-)$1	1	8	13	14.9999
(..((	chr15:70388479-70388772(-)$1	1	114	119	14.9999
..)))	chr12:80083691-80083955(-)$1	1	100	105	14.9999
)))))	chr6:31929217-31929433(+)$1	1	64	69	14.9999
....(	chr5:1078003-1078309(-)$1	1	108	113	14.9999
..(((	chr12:121764790-121765091(-)$1	1	160	165	14.9999
(((..	chr5:891153-891447(-)$1	1	32	37	14.9999
..)))	chr3:42232935-42233182(+)$1	1	90	95	14.9999
(....	chr14:105179628-105179896(+)$1	1	52	57	14.9999
)))).	chr1:155294924-155295216(+)$1	1	150	155	14.9999
)))))	chr14:23939130-23939434(+)$1	1	194	199	14.9999
)))))	chr14:35872756-35873018(-)$1	1	150	155	14.9999
)))))	chr9:117027600-117027804(+)$1	1	93	98	14.9999
(((((	chr17:42932181-42932469(-)$1	1	196	201	14.9999
(...(	chr9:116973167-116973395(+)$1	1	16	21	14.9999
))).(	chr2:3392269-3392578(+)$1	1	211	216	14.9999
)).))	chr1:155105919-155106164(+)$1	1	236	241	14.9999
((((.	chr12:120597929-120598157(-)$1	1	34	39	14.9999
(((..	chrX:118123210-118123528(+)$1	1	30	35	14.9999
).)((	chr17:63533807-63534091(-)$1	1	84	89	14.9999
.....	chr3:49052298-49052531(+)$1	1	170	175	14.9999
)))))	chr9:96001937-96002180(+)$1	1	210	215	14.9999
(.(((	chr1:1687937-1688205(-)$1	1	69	74	14.9999
.....	chr19:54963730-54963942(+)$1	1	85	90	14.9999
.(((.	chr8:25135995-25136312(+)$1	1	145	150	14.9999
..)))	chr19:5932406-5932665(-)$1	1	46	51	14.9999
((((.	chr15:40705129-40705445(+)$1	1	236	241	14.9999
(((((	chr5:95231191-95231437(-)$1	1	15	20	14.9999
...((	chr2:74656998-74657243(-)$1	1	27	32	14.9999
(((((	chr17:18882020-18882310(-)$1	1	14	19	14.9999
....(	chr20:60714841-60715061(-)$1	1	83	88	14.9999
)))))	chr11:62370196-62370479(-)$1	1	60	65	14.9999
)))).	chr16:3785927-3786223(-)$1	1	199	204	14.9999
(((((	chr16:16243953-16244185(-)$1	1	64	69	14.9999
(.(((	chr11:117693226-117693502(-)$1	1	53	58	14.9999
...((	chr3:10354253-10354575(-)$1	1	136	141	14.9999
(((((	chr3:184039680-184039977(+)$1	1	5	10	14.9999
(((((	chr18:56057718-56057993(+)$1	1	147	152	14.9999
....)	chr12:133143949-133144196(+)$1	1	128	133	14.9999
))..)	chr16:708081-708336(+)$1	1	55	60	14.9999
(((((	chr9:139102933-139103228(-)$1	1	73	78	14.9999
)).))	chr17:27011590-27011847(+)$1	1	144	149	14.9999
(((.(	chr1:145439740-145439966(+)$1	1	39	44	14.9999
)))))	chr6:167352271-167352532(-)$1	1	191	196	14.9999
....)	chr9:130712567-130712812(-)$1	1	130	135	14.9999
(((((	chr12:49439747-49439979(-)$1	1	9	14	14.9999

#PSSM
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
C : 0.98	c : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	

#score	809.9999999999995
#seq	54
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_CDS_m3_run1.nuc.txt

#NT
AGGCCCUGGG	chr1:180794358-180794649(+)$1	291	252	262	11.0344
GGGAGCUGUG	chr2:32390860-32391181(+)$1	321	87	97	11.7241
GGGGCCUGGG	chr11:64898802-64899047(-)$1	245	113	123	17.5862
GCGUCCUGGG	chr19:7998605-7998854(-)$1	249	0	10	10.6896
GGGUGCUGAG	chr3:47042320-47042594(+)$1	274	80	90	11.5517
gggagguggg	chr5:150847375-150847664(+)$1	289	199	209	11.7241
CGGGACAGGG	chr1:23885379-23885629(-)$1	250	26	36	11.4655
UGGAACUGGG	chr3:15055157-15055509(+)$1	352	42	52	13.0172
GGGUGCUGUG	chr3:47458474-47458712(-)$1	238	34	44	11.7241
GGGCACUGUG	chr20:49191085-49191336(+)$1	251	234	244	12.0689
GGGGAGGGGG	chr16:2256587-2256872(+)$1	285	80	90	11.2931
GGGGACUGUG	chr11:67829170-67829487(-)$1	317	12	22	15.3448
ggaggcugag	chr1:246784827-246785112(+)$1	285	228	238	11.2931
UGGGACUCGG	chr9:139757220-139757457(-)$1	237	174	184	11.4655
GGGAACUGAG	chr7:127229993-127230255(+)$1	262	216	226	12.2413
GGGAACUGUG	chr12:120569562-120569833(-)$1	271	41	51	12.4137
CAGGACUGGG	chr3:47030978-47031239(+)$1	261	212	222	11.5517
GUGGAGUGGG	chr1:67395963-67396242(+)$1	279	185	195	11.4655
UGGGGCUGGG	chr2:70903724-70903989(-)$1	265	124	134	15.2586
GGGGGCUUGG	chr7:107643108-107643399(-)$1	291	197	207	13.6206
GGGGAAAGGG	chr11:59562915-59563191(+)$1	276	151	161	10.8620
GCAGACUGGG	chr11:73102135-73102429(+)$1	294	140	150	11.7241
AGGGGCUGGG	chr11:34154586-34154848(+)$1	262	223	233	14.9137
GGAGCCUGGC	chr1:182772789-182773084(+)$1	295	229	239	10.8620
GUAGCCUGGG	chr22:50687453-50687712(-)$1	259	93	103	10.5172
GGUGGCUGGG	chr1:155295046-155295298(+)$1	252	2	12	14.4827
GGCGGCUGAG	chr11:62655797-62656013(+)$1	216	45	55	10.8620
GGGGCCUGGA	chr7:100877411-100877665(-)$1	254	41	51	13.6206
GGGGGCAGGC	chr9:139996017-139996271(+)$1	254	111	121	10.5172
GGCGGCUGGG	chr1:226373847-226374204(-)$1	357	16	26	14.5689
UGGGCAUGGG	chr10:1046716-1047061(+)$1	345	28	38	10.7758
GGGUCCUGGG	chr6:30570613-30570853(-)$1	240	169	179	14.6551
agguccuggg	chr3:101056205-101056481(-)$1	276	245	255	11.3793
UGGGAGUGGG	chr17:26874517-26874779(-)$1	262	104	114	12.4137
GGGCUCUGGG	chr1:156562188-156562491(+)$1	303	119	129	13.6206
GGGGACGGGG	chr1:1284179-1284398(-)$1	219	185	195	14.8275
GUGGACUAGG	chr11:372990-373236(+)$1	246	191	201	10.4310
GGGGAGUCGG	chr17:38153477-38153701(+)$1	224	208	218	10.8620
GGGGAGUGCG	chr6:26597348-26597603(+)$1	255	224	234	11.3793
CGGGCCUGGG	chr22:19706208-19706488(+)$1	280	5	15	14.3103
GGAGGCUGGG	chr1:6271785-6272058(+)$1	273	80	90	15.0000
GAGGACUGGC	chr19:12790286-12790544(-)$1	258	54	64	11.2931
GGCGACUGGC	chr9:139887455-139887711(+)$1	256	228	238	11.7241
GGGGACUGGG	chr6:30570815-30571087(-)$1	272	123	133	18.8793
AGGGGCUGGG	chr8:145001271-145001527(-)$1	256	216	226	14.9137
GGGUCCUGGC	chr16:4732689-4732940(+)$1	251	22	32	11.1206
GCAGGCUGGG	chr20:44567864-44568124(+)$1	260	3	13	11.0344
GGAGGAUGGG	chr17:2227709-2228026(-)$1	317	58	68	11.1206
UGGGGCUGGG	chr15:42134366-42134620(+)$1	254	145	155	15.2586
GGGGUCUGGU	chr3:50152742-50152992(+)$1	250	119	129	12.8448
UGGAACUGGG	chr14:102473323-102473561(+)$1	238	28	38	13.0172
GGAGACUGGC	chr22:39709050-39709302(-)$1	252	221	231	12.1551
GGGAACUGUG	chr22:19124661-19124944(-)$1	283	126	136	12.4137
GGGGGCGGGA	chr12:113725934-113726177(+)$1	243	162	172	10.1724
UGGGAGUGGG	chr3:39453415-39453718(+)$1	303	278	288	12.4137
GUUGACUGGG	chr6:88264983-88265247(-)$1	264	158	168	11.2931
CGGGACGGGG	chr19:1012216-1012497(-)$1	281	112	122	11.5517

#otherMatches

#Struct PSSM
FFFFFF:ddd	chr7:150745824-150746116(+)$1	292	137	147	10.4310
CCCC}CCCff	chr1:180794358-180794649(+)$1	291	252	262	11.0344
gggggggmmm	chr2:32390860-32391181(+)$1	321	87	97	11.7241
ffff"""ccc	chr11:64898802-64899047(-)$1	245	113	123	17.5862
::AKKFFFFF	chr19:7998605-7998854(-)$1	249	0	10	10.6896
eeeeeeeeee	chr3:47042320-47042594(+)$1	274	80	90	11.5517
eeeCCC}FFF	chr5:150847375-150847664(+)$1	289	199	209	11.7241
IIIIIII{FF	chr1:23885379-23885629(-)$1	250	26	36	11.4655
eee::EEEEE	chr3:15055157-15055509(+)$1	352	42	52	13.0172
EKKBB{EEEE	chr3:47458474-47458712(-)$1	238	34	44	11.7241
eeeee]eeee	chr20:49191085-49191336(+)$1	251	234	244	12.0689
BBHHHHHHHH	chr16:2256587-2256872(+)$1	285	80	90	11.2931
DDbb!!dddd	chr11:67829170-67829487(-)$1	317	12	22	15.3448
AGGGGGGGGG	chr1:246784827-246785112(+)$1	285	228	238	11.2931
gggg:ggggg	chr9:139757220-139757457(-)$1	237	174	184	11.4655
hhh::ccc!!	chr7:127229993-127230255(+)$1	262	216	226	12.2413
IIIIIII{A{	chr12:120569562-120569833(-)$1	271	41	51	12.4137
eeee22dddd	chr3:47030978-47031239(+)$1	261	212	222	11.5517
eeeeccceee	chr1:67395963-67396242(+)$1	279	185	195	11.4655
bIIIIIIIII	chr2:70903724-70903989(-)$1	265	124	134	15.2586
======^^^^	chr7:107643108-107643399(-)$1	291	197	207	13.6206
dddd::dddd	chr11:59562915-59563191(+)$1	276	151	161	10.8620
]dddd22bba	chr11:73102135-73102429(+)$1	294	140	150	11.7241
rrhhhhhhhh	chr11:34154586-34154848(+)$1	262	223	233	14.9137
cc[eeeee((	chr1:182772789-182773084(+)$1	295	229	239	10.8620
$$$ccceeee	chr22:50687453-50687712(-)$1	259	93	103	10.5172
BB{GGGGGGG	chr1:155295046-155295298(+)$1	252	2	12	14.4827
NNHHHHHHHH	chr11:62655797-62656013(+)$1	216	45	55	10.8620
d"""ffffff	chr7:100877411-100877665(-)$1	254	41	51	13.6206
ffffff!!bb	chr9:139996017-139996271(+)$1	254	111	121	10.5172
II{CCCeeee	chr1:226373847-226374204(-)$1	357	16	26	14.5689
GGGGG:::ee	chr10:1046716-1047061(+)$1	345	28	38	10.7758
f333hhhhhh	chr6:30570613-30570853(-)$1	240	169	179	14.6551
FF|||||||E	chr3:101056205-101056481(-)$1	276	245	255	11.3793
ddcccfffff	chr17:26874517-26874779(-)$1	262	104	114	12.4137
!=========	chr1:156562188-156562491(+)$1	303	119	129	13.6206
c[ffffff!!	chr1:1284179-1284398(-)$1	219	185	195	14.8275
llhhhhhhhh	chr11:372990-373236(+)$1	246	191	201	10.4310
GGGGGGYYGG	chr17:38153477-38153701(+)$1	224	208	218	10.8620
}JJJJJJJJJ	chr6:26597348-26597603(+)$1	255	224	234	11.3793
:EEEEE{A{B	chr22:19706208-19706488(+)$1	280	5	15	14.3103
fff:GGGGGG	chr1:6271785-6272058(+)$1	273	80	90	15.0000
{CCCKKBB{B	chr19:12790286-12790544(-)$1	258	54	64	11.2931
}BBYYBB}FF	chr9:139887455-139887711(+)$1	256	228	238	11.7241
fmmmmfffff	chr6:30570815-30571087(-)$1	272	123	133	18.8793
DDDHHHHHHH	chr8:145001271-145001527(-)$1	256	216	226	14.9137
DDDDLLLFFF	chr16:4732689-4732940(+)$1	251	22	32	11.1206
CCCEEEEEAO	chr20:44567864-44568124(+)$1	260	3	13	11.0344
]affffffgg	chr17:2227709-2228026(-)$1	317	58	68	11.1206
eeeee[bb[f	chr15:42134366-42134620(+)$1	254	145	155	15.2586
mmmmeeeee:	chr3:50152742-50152992(+)$1	250	119	129	12.8448
FFF:::::EE	chr14:102473323-102473561(+)$1	238	28	38	13.0172
]ggggggg]c	chr22:39709050-39709302(-)$1	252	221	231	12.1551
99999dddd]	chr22:19124661-19124944(-)$1	283	126	136	12.4137
]ggggggg]c	chr12:113725934-113726177(+)$1	243	162	172	10.1724
:IIIIIIIII	chr3:39453415-39453718(+)$1	303	278	288	12.4137
EEE}BBEEEE	chr6:88264983-88265247(-)$1	264	158	168	11.2931
fffff]eeee	chr19:1012216-1012497(-)$1	281	112	122	11.5517

#DB
)))))).(((	chr7:150745824-150746116(+)$1	1	137	147	10.4310
)))).)))((	chr1:180794358-180794649(+)$1	1	252	262	11.0344
(((((((...	chr2:32390860-32391181(+)$1	1	87	97	11.7241
((((...(((	chr11:64898802-64899047(-)$1	1	113	123	17.5862
..(..(((((	chr19:7998605-7998854(-)$1	1	0	10	10.6896
((((((((((	chr3:47042320-47042594(+)$1	1	80	90	11.5517
)))))).)))	chr5:150847375-150847664(+)$1	1	199	209	11.7241
(((((((.((	chr1:23885379-23885629(-)$1	1	26	36	11.4655
)))..(((((	chr3:15055157-15055509(+)$1	1	42	52	13.0172
(..((.((((	chr3:47458474-47458712(-)$1	1	34	44	11.7241
))))).))))	chr20:49191085-49191336(+)$1	1	234	244	12.0689
((((((((((	chr16:2256587-2256872(+)$1	1	80	90	11.2931
((((..((((	chr11:67829170-67829487(-)$1	1	12	22	15.3448
))))))))))	chr1:246784827-246785112(+)$1	1	228	238	11.2931
)))).(((((	chr9:139757220-139757457(-)$1	1	174	184	11.4655
)))..(((..	chr7:127229993-127230255(+)$1	1	216	226	12.2413
(((((((.(.	chr12:120569562-120569833(-)$1	1	41	51	12.4137
))))..))))	chr3:47030978-47031239(+)$1	1	212	222	11.5517
((((((((((	chr1:67395963-67396242(+)$1	1	185	195	11.4655
))))))))))	chr2:70903724-70903989(-)$1	1	124	134	15.2586
((((((....	chr7:107643108-107643399(-)$1	1	197	207	13.6206
))))..((((	chr11:59562915-59563191(+)$1	1	151	161	10.8620
.))))..)))	chr11:73102135-73102429(+)$1	1	140	150	11.7241
..))))))))	chr11:34154586-34154848(+)$1	1	223	233	14.9137
((.(((((..	chr1:182772789-182773084(+)$1	1	229	239	10.8620
...(((((((	chr22:50687453-50687712(-)$1	1	93	103	10.5172
((.(((((((	chr1:155295046-155295298(+)$1	1	2	12	14.4827
..((((((((	chr11:62655797-62656013(+)$1	1	45	55	10.8620
(...((((((	chr7:100877411-100877665(-)$1	1	41	51	13.6206
((((((..((	chr9:139996017-139996271(+)$1	1	111	121	10.5172
((.(((((((	chr1:226373847-226374204(-)$1	1	16	26	14.5689
(((((...((	chr10:1046716-1047061(+)$1	1	28	38	10.7758
)...))))))	chr6:30570613-30570853(-)$1	1	169	179	14.6551
)).......)	chr3:101056205-101056481(-)$1	1	245	255	11.3793
((((((((((	chr17:26874517-26874779(-)$1	1	104	114	12.4137
.(((((((((	chr1:156562188-156562491(+)$1	1	119	129	13.6206
(.((((((..	chr1:1284179-1284398(-)$1	1	185	195	14.8275
..))))))))	chr11:372990-373236(+)$1	1	191	201	10.4310
))))))..))	chr17:38153477-38153701(+)$1	1	208	218	10.8620
.)))))))))	chr6:26597348-26597603(+)$1	1	224	234	11.3793
.(((((.(.(	chr22:19706208-19706488(+)$1	1	5	15	14.3103
))).((((((	chr1:6271785-6272058(+)$1	1	80	90	15.0000
.(((..((.(	chr19:12790286-12790544(-)$1	1	54	64	11.2931
.))..)).))	chr9:139887455-139887711(+)$1	1	228	238	11.7241
(....)))))	chr6:30570815-30571087(-)$1	1	123	133	18.8793
))))))))))	chr8:145001271-145001527(-)$1	1	216	226	14.9137
((((...(((	chr16:4732689-4732940(+)$1	1	22	32	11.1206
(((((((((.	chr20:44567864-44568124(+)$1	1	3	13	11.0344
.)((((((((	chr17:2227709-2228026(-)$1	1	58	68	11.1206
(((((.((.(	chr15:42134366-42134620(+)$1	1	145	155	15.2586
....))))).	chr3:50152742-50152992(+)$1	1	119	129	12.8448
(((.....((	chr14:102473323-102473561(+)$1	1	28	38	13.0172
.))))))).)	chr22:39709050-39709302(-)$1	1	221	231	12.1551
.....)))).	chr22:19124661-19124944(-)$1	1	126	136	12.4137
.))))))).)	chr12:113725934-113726177(+)$1	1	162	172	10.1724
.)))))))))	chr3:39453415-39453718(+)$1	1	278	288	12.4137
))).))))))	chr6:88264983-88265247(-)$1	1	158	168	11.2931
))))).))))	chr19:1012216-1012497(-)$1	1	112	122	11.5517

#PSSM
G : 0.68	U : 0.13	C : 0.06	A : 0.05	g : 0.03	a : 0.01	
G : 0.79	U : 0.06	C : 0.05	g : 0.05	A : 0.03	
G : 0.74	A : 0.12	C : 0.05	g : 0.03	U : 0.03	a : 0.01	
G : 0.68	U : 0.10	A : 0.10	C : 0.05	a : 0.01	g : 0.01	u : 0.01	
A : 0.44	G : 0.27	C : 0.17	U : 0.05	g : 0.03	c : 0.01	
C : 0.79	G : 0.10	A : 0.05	c : 0.03	g : 0.01	
U : 0.82	G : 0.06	u : 0.05	A : 0.05	
G : 0.87	g : 0.05	C : 0.03	U : 0.01	A : 0.01	
G : 0.77	U : 0.10	A : 0.05	g : 0.03	a : 0.01	C : 0.01	
G : 0.77	C : 0.12	g : 0.05	A : 0.03	U : 0.01	

#score	722.7586206896556
#seq	58
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_UTR_m3_run1.nuc.txt

#NT
GGUCUGG	chr12:56119179-56119458(-)$1	279	115	122	13.2115
GGGGUGG	chr3:128888981-128889204(-)$1	223	47	54	13.4038
GGGCAGG	chr16:88876057-88876305(-)$1	248	145	152	12.9230
GGGGUGG	chr15:44063538-44063789(+)$1	251	121	128	13.4038
GAGCUGG	chr1:8921264-8921549(-)$1	285	71	78	12.6346
AGGCUGG	chr7:128411348-128411576(+)$1	228	19	26	12.7307
GGGCUGA	chr2:85824518-85824775(+)$1	257	117	124	13.2115
GGGCUGG	chr17:79991706-79991976(+)$1	270	22	29	17.0576
GGGCAGG	chr6:31698285-31698537(-)$1	252	17	24	12.9230
GGGGUGG	chr11:60658390-60658661(-)$1	271	91	98	13.4038
AGGCUGG	chr14:69847059-69847330(-)$1	271	62	69	12.7307
GGGCCGG	chr19:58898538-58898791(+)$1	253	182	189	12.8269
GGGGUGG	chr5:43290979-43291288(-)$1	309	86	93	13.4038
gggccgg	chr19:49611348-49611593(+)$1	245	75	82	12.8269
GGACUGG	chr11:812698-812942(+)$1	244	8	15	13.4038
GGGCUGA	chr19:4657706-4657989(-)$1	283	91	98	13.2115
GGGUUGG	chr10:73576107-73576341(-)$1	234	115	122	13.0192
GGGCUGC	chr19:19638837-19639090(+)$1	253	38	45	13.5000
GGGCUGG	chr12:56119495-56119741(-)$1	246	81	88	17.0576
GGGCUGC	chr7:98992043-98992325(+)$1	282	184	191	13.5000
GGGCUGG	chr19:13054548-13054826(+)$1	278	194	201	17.0576
GGGCUGC	chr3:52029771-52030010(-)$1	239	198	205	13.5000
GGGCUGG	chr11:63743695-63743954(+)$1	259	51	58	17.0576
UGGCUGG	chr19:12907694-12907989(-)$1	295	19	26	12.8269
gggcugg	chr8:30669846-30670092(-)$1	246	117	124	17.0576
GGACUGG	chr11:57509590-57509821(+)$1	231	10	17	13.4038
GGGCUGG	chr17:4848897-4849130(-)$1	233	61	68	17.0576
GGACUGG	chr12:53693007-53693327(+)$1	320	254	261	13.4038
GGGCGGG	chr8:101734160-101734372(-)$1	212	2	9	12.7307
GGGCUGG	chr19:49611416-49611721(+)$1	305	173	180	17.0576
GGACUGG	chr11:5289504-5289750(-)$1	246	109	116	13.4038
GGGCUGU	chr16:56717812-56718084(+)$1	272	79	86	13.3076
GAGCUGG	chr11:840114-840379(-)$1	265	90	97	12.6346
GGGCUGG	chr19:49122295-49122533(-)$1	238	159	166	17.0576
GGGCUGU	chr6:31694740-31694991(-)$1	251	179	186	13.3076
UGGCUGG	chr2:98264508-98264744(+)$1	236	151	158	12.8269
GGGUUGG	chr19:54704628-54704839(+)$1	211	163	170	13.0192
GGGGUGG	chr19:46190663-46190958(-)$1	295	270	277	13.4038
GGGCUGC	chr11:8704241-8704464(+)$1	223	108	115	13.5000
GGCCUGG	chr16:89627017-89627221(+)$1	204	149	156	13.0192
GGGCUGC	chr19:45422421-45422680(+)$1	259	215	222	13.5000
GAGCUGG	chr11:75111676-75111904(+)$1	228	112	119	12.6346
GGUCUGG	chrX:153609540-153609763(+)$1	223	30	37	13.2115
UGGCUGG	chr2:98264436-98264681(+)$1	245	223	230	12.8269
GGGCUGU	chr16:56643140-56643397(+)$1	257	56	63	13.3076
GGGCUGG	chr17:79857864-79858138(+)$1	274	183	190	17.0576
GGUCUGG	chrX:153609563-153609816(+)$1	253	7	14	13.2115
GGGCUGG	chr7:100276448-100276710(+)$1	262	46	53	17.0576
GGGCAGG	chr11:75115803-75116013(+)$1	210	121	128	12.9230
GGGCUGG	chr16:88709610-88709920(-)$1	310	256	263	17.0576
GGGGUGG	chr19:44111533-44111822(-)$1	289	85	92	13.4038

#otherMatches

#Struct PSSM
GGG::dd	chr11:5289550-5289799(-)$1	249	158	165	13.4038
eeooooo	chr12:56119179-56119458(-)$1	279	115	122	13.2115
IIII{A:	chr3:128888981-128889204(-)$1	223	47	54	13.4038
""eeeee	chr16:88876057-88876305(-)$1	248	145	152	12.9230
ggggeee	chr15:44063538-44063789(+)$1	251	121	128	13.4038
iii]eee	chr1:8921264-8921549(-)$1	285	71	78	12.6346
CCfffff	chr7:128411348-128411576(+)$1	228	19	26	12.7307
ggggggn	chr2:85824518-85824775(+)$1	257	117	124	13.2115
[gggggg	chr17:79991706-79991976(+)$1	270	22	29	17.0576
##ccc##	chr6:31698285-31698537(-)$1	252	17	24	12.9230
iiiiiii	chr11:60658390-60658661(-)$1	271	91	98	13.4038
ooooddd	chr14:69847059-69847330(-)$1	271	62	69	12.7307
GGGGGGG	chr19:58898538-58898791(+)$1	253	182	189	12.8269
a::::BB	chr5:43290979-43291288(-)$1	309	86	93	13.4038
gggggg:	chr19:49611348-49611593(+)$1	245	75	82	12.8269
c[dddd[	chr11:812698-812942(+)$1	244	8	15	13.4038
eeeee""	chr19:4657706-4657989(-)$1	283	91	98	13.2115
gggg555	chr10:73576107-73576341(-)$1	234	115	122	13.0192
ndddd::	chr19:19638837-19639090(+)$1	253	38	45	13.5000
hhhhhh[	chr12:56119495-56119741(-)$1	246	81	88	17.0576
FEEEEED	chr7:98992043-98992325(+)$1	282	184	191	13.5000
]dddd]a	chr19:13054548-13054826(+)$1	278	194	201	17.0576
hhha22g	chr3:52029771-52030010(-)$1	239	198	205	13.5000
mccc]cc	chr11:63743695-63743954(+)$1	259	51	58	17.0576
cddddll	chr19:12907694-12907989(-)$1	295	19	26	12.8269
C{CCCBB	chr8:30669846-30670092(-)$1	246	117	124	17.0576
C{JJJJJ	chr11:57509590-57509821(+)$1	231	10	17	13.4038
eee!!ee	chr17:4848897-4849130(-)$1	233	61	68	17.0576
fffffcc	chr12:53693007-53693327(+)$1	320	254	261	13.4038
:GGGGGG	chr8:101734160-101734372(-)$1	212	2	9	12.7307
fffff::	chr19:49611416-49611721(+)$1	305	173	180	17.0576
FFF::dd	chr11:5289504-5289750(-)$1	246	109	116	13.4038
dddduuu	chr16:56717812-56718084(+)$1	272	79	86	13.3076
DD{BBcc	chr11:840114-840379(-)$1	265	90	97	12.6346
dd]eeee	chr19:49122295-49122533(-)$1	238	159	166	17.0576
ZZZDDDD	chr6:31694740-31694991(-)$1	251	179	186	13.3076
=======	chr2:98264508-98264744(+)$1	236	151	158	12.8269
======n	chr19:54704628-54704839(+)$1	211	163	170	13.0192
iii::CC	chr19:46190663-46190958(-)$1	295	270	277	13.4038
bb:ffff	chr11:8704241-8704464(+)$1	223	108	115	13.5000
ddddddd	chr16:89627017-89627221(+)$1	204	149	156	13.0192
22ccc]=	chr19:45422421-45422680(+)$1	259	215	222	13.5000
####ggg	chr11:75111676-75111904(+)$1	228	112	119	12.6346
JJJJJJJ	chrX:153609540-153609763(+)$1	223	30	37	13.2115
=======	chr2:98264436-98264681(+)$1	245	223	230	12.8269
dddduuu	chr16:56643140-56643397(+)$1	257	56	63	13.3076
h[bbppp	chr17:79857864-79858138(+)$1	274	183	190	17.0576
JJJJJJJ	chrX:153609563-153609816(+)$1	253	7	14	13.2115
hhhhhhh	chr7:100276448-100276710(+)$1	262	46	53	17.0576
dddd333	chr11:75115803-75116013(+)$1	210	121	128	12.9230
CCEEEEE	chr16:88709610-88709920(-)$1	310	256	263	17.0576
PPPPPPI	chr19:44111533-44111822(-)$1	289	85	92	13.4038

#DB
(((..((	chr11:5289550-5289799(-)$1	1	158	165	13.4038
((.....	chr12:56119179-56119458(-)$1	1	115	122	13.2115
((((.(.	chr3:128888981-128889204(-)$1	1	47	54	13.4038
..(((((	chr16:88876057-88876305(-)$1	1	145	152	12.9230
(((((((	chr15:44063538-44063789(+)$1	1	121	128	13.4038
))).)))	chr1:8921264-8921549(-)$1	1	71	78	12.6346
(((((((	chr7:128411348-128411576(+)$1	1	19	26	12.7307
((((((.	chr2:85824518-85824775(+)$1	1	117	124	13.2115
.((((((	chr17:79991706-79991976(+)$1	1	22	29	17.0576
..(((..	chr6:31698285-31698537(-)$1	1	17	24	12.9230
(((((((	chr11:60658390-60658661(-)$1	1	91	98	13.4038
....)))	chr14:69847059-69847330(-)$1	1	62	69	12.7307
)))))))	chr19:58898538-58898791(+)$1	1	182	189	12.8269
)....((	chr5:43290979-43291288(-)$1	1	86	93	13.4038
)))))).	chr19:49611348-49611593(+)$1	1	75	82	12.8269
(.((((.	chr11:812698-812942(+)$1	1	8	15	13.4038
(((((..	chr19:4657706-4657989(-)$1	1	91	98	13.2115
))))...	chr10:73576107-73576341(-)$1	1	115	122	13.0192
.))))..	chr19:19638837-19639090(+)$1	1	38	45	13.5000
((((((.	chr12:56119495-56119741(-)$1	1	81	88	17.0576
)))))))	chr7:98992043-98992325(+)$1	1	184	191	13.5000
.)))).)	chr19:13054548-13054826(+)$1	1	194	201	17.0576
))))..)	chr3:52029771-52030010(-)$1	1	198	205	13.5000
.))).))	chr11:63743695-63743954(+)$1	1	51	58	17.0576
(((((..	chr19:12907694-12907989(-)$1	1	19	26	12.8269
(.(((((	chr8:30669846-30670092(-)$1	1	117	124	17.0576
(.(((((	chr11:57509590-57509821(+)$1	1	10	17	13.4038
(((..((	chr17:4848897-4849130(-)$1	1	61	68	17.0576
)))))((	chr12:53693007-53693327(+)$1	1	254	261	13.4038
.((((((	chr8:101734160-101734372(-)$1	1	2	9	12.7307
)))))..	chr19:49611416-49611721(+)$1	1	173	180	17.0576
(((..((	chr11:5289504-5289750(-)$1	1	109	116	13.4038
((((...	chr16:56717812-56718084(+)$1	1	79	86	13.3076
((.((((	chr11:840114-840379(-)$1	1	90	97	12.6346
)).))))	chr19:49122295-49122533(-)$1	1	159	166	17.0576
...))))	chr6:31694740-31694991(-)$1	1	179	186	13.3076
)))))))	chr2:98264508-98264744(+)$1	1	151	158	12.8269
((((((.	chr19:54704628-54704839(+)$1	1	163	170	13.0192
)))..))	chr19:46190663-46190958(-)$1	1	270	277	13.4038
)).((((	chr11:8704241-8704464(+)$1	1	108	115	13.5000
))))(((	chr16:89627017-89627221(+)$1	1	149	156	13.0192
..))).)	chr19:45422421-45422680(+)$1	1	215	222	13.5000
....(((	chr11:75111676-75111904(+)$1	1	112	119	12.6346
(((((((	chrX:153609540-153609763(+)$1	1	30	37	13.2115
)))))))	chr2:98264436-98264681(+)$1	1	223	230	12.8269
((((...	chr16:56643140-56643397(+)$1	1	56	63	13.3076
(.((...	chr17:79857864-79858138(+)$1	1	183	190	17.0576
(((((((	chrX:153609563-153609816(+)$1	1	7	14	13.2115
(((((((	chr7:100276448-100276710(+)$1	1	46	53	17.0576
))))...	chr11:75115803-75116013(+)$1	1	121	128	12.9230
)))))))	chr16:88709610-88709920(-)$1	1	256	263	17.0576
......(	chr19:44111533-44111822(-)$1	1	85	92	13.4038

#PSSM
G : 0.86	U : 0.05	A : 0.03	g : 0.03	
G : 0.90	A : 0.05	g : 0.03	
G : 0.78	A : 0.09	U : 0.05	g : 0.03	C : 0.01	
C : 0.80	G : 0.11	c : 0.03	U : 0.03	
U : 0.86	A : 0.05	C : 0.01	c : 0.01	u : 0.01	G : 0.01	
G : 0.96	g : 0.03	
G : 0.76	C : 0.09	U : 0.05	A : 0.03	g : 0.03	

#score	726.6153846153852
#seq	52
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_transcript_m1_run2.nuc.txt

#NT
UGGA	chr1:156521676-156521977(-)$1	301	151	155	11.9999
UGGA	chr11:73587959-73588217(+)$1	258	91	95	11.9999
UGGA	chr20:61457475-61457688(+)$1	213	35	39	11.9999
UGGA	chr19:7677044-7677276(+)$1	232	154	158	11.9999
UGGA	chr8:144643231-144643465(+)$1	234	49	53	11.9999
UGGA	chr1:205493336-205493586(+)$1	250	51	55	11.9999
UGGA	chr6:168307749-168308001(+)$1	252	114	118	11.9999
UGGA	chr22:50695462-50695720(-)$1	258	1	5	11.9999
UGGA	chr20:17605148-17605367(-)$1	219	72	76	11.9999
UGGA	chr16:16146539-16146773(+)$1	234	64	68	11.9999
UGGA	chr9:116151626-116151901(-)$1	275	155	159	11.9999
ugga	chr19:39436983-39437332(-)$1	349	50	54	11.9999
UGGA	chr2:61459494-61459714(-)$1	220	159	163	11.9999
UGGA	chr11:116654145-116654362(-)$1	217	35	39	11.9999
UGGA	chr13:111870015-111870304(+)$1	289	125	129	11.9999
UGGA	chr17:73826558-73826785(-)$1	227	16	20	11.9999
UGGA	chr2:85780317-85780564(-)$1	247	169	173	11.9999
UGGA	chr2:27549946-27550193(-)$1	247	118	122	11.9999
UGGA	chr1:109825039-109825289(-)$1	250	38	42	11.9999
UGGA	chr17:79567263-79567513(-)$1	250	79	83	11.9999
UGGA	chrX:70468768-70468998(-)$1	230	49	53	11.9999
UGGA	chrX:54953999-54954234(+)$1	235	18	22	11.9999
UGGA	chr17:40271956-40272234(-)$1	278	137	141	11.9999
UGGA	chr9:134025901-134026157(+)$1	256	123	127	11.9999
UGGA	chr17:40812635-40812899(+)$1	264	71	75	11.9999
UGGA	chr17:73827225-73827440(-)$1	215	27	31	11.9999
UGGA	chr17:40497467-40497710(-)$1	243	57	61	11.9999
ugga	chr9:135796645-135796904(-)$1	259	27	31	11.9999
UGGA	chr11:77669701-77669970(-)$1	269	72	76	11.9999
UGGA	chr16:2106544-2106773(+)$1	229	116	120	11.9999
UGGA	chr19:18960912-18961151(+)$1	239	51	55	11.9999
UGGA	chr9:111685037-111685267(-)$1	230	76	80	11.9999
UGGA	chr2:86297123-86297343(-)$1	220	106	110	11.9999
UGGA	chr9:95050306-95050563(-)$1	257	32	36	11.9999
UGGA	chr1:231954087-231954384(+)$1	297	56	60	11.9999
UGGA	chr3:4452446-4452765(-)$1	319	163	167	11.9999
UGGA	chr12:132199263-132199534(+)$1	271	252	256	11.9999
UGGA	chr20:60859069-60859357(+)$1	288	63	67	11.9999
UGGA	chr19:10887720-10887963(+)$1	243	112	116	11.9999
UGGA	chr19:17954087-17954329(-)$1	242	55	59	11.9999
UGGA	chr6:31498971-31499195(-)$1	224	68	72	11.9999
UGGA	chr17:46053220-46053477(+)$1	257	81	85	11.9999
UGGA	chr1:156928448-156928721(-)$1	273	2	6	11.9999
UGGA	chr14:68272071-68272367(-)$1	296	134	138	11.9999
UGGA	chr4:83787876-83788111(-)$1	235	118	122	11.9999
UGGA	chr17:76122806-76123090(-)$1	284	47	51	11.9999
UGGA	chr7:111617101-111617438(-)$1	337	101	105	11.9999
UGGA	chr8:145616113-145616340(+)$1	227	221	225	11.9999
UGGA	chr6:157469842-157470116(+)$1	274	12	16	11.9999
UGGA	chr2:27702277-27702498(-)$1	221	46	50	11.9999
UGGA	chr16:89723886-89724117(-)$1	231	122	126	11.9999
UGGA	chr14:74753320-74753579(-)$1	259	96	100	11.9999
UGGA	chr11:121444902-121445175(+)$1	273	65	69	11.9999
UGGA	chr19:13008016-13008237(+)$1	221	21	25	11.9999
UGGA	chr3:48691271-48691518(-)$1	247	5	9	11.9999
UGGA	chr22:32011123-32011367(+)$1	244	231	235	11.9999
UGGA	chr17:18827139-18827393(+)$1	254	133	137	11.9999
UGGA	chr14:24710124-24710359(-)$1	235	55	59	11.9999
UGGA	chr12:53701975-53702234(-)$1	259	241	245	11.9999
UGGA	chr17:43005318-43005521(-)$1	203	106	110	11.9999
UGGA	chr10:118704339-118704622(-)$1	283	138	142	11.9999
UGGA	chr6:144814468-144814692(+)$1	224	5	9	11.9999
UGGA	chr19:39435508-39435741(-)$1	233	50	54	11.9999
UGGA	chr16:28880243-28880519(+)$1	276	26	30	11.9999
UGGA	chr3:48611203-48611422(-)$1	219	6	10	11.9999
UGGA	chr16:27512489-27512764(-)$1	275	116	120	11.9999
UGGA	chr22:31985370-31985659(+)$1	289	125	129	11.9999
UGGA	chr16:3712855-3713069(-)$1	214	20	24	11.9999
UGGA	chr22:22324556-22324787(-)$1	231	157	161	11.9999
UGGA	chr3:127336100-127336336(+)$1	236	58	62	11.9999
UGGA	chr9:116924961-116925164(+)$1	203	49	53	11.9999
UGGA	chr1:76255728-76256011(+)$1	283	0	4	11.9999
UGGA	chr1:246940232-246940505(+)$1	273	23	27	11.9999
UGGA	chr22:42290723-42290951(+)$1	228	23	27	11.9999
UGGA	chr11:61108806-61109016(+)$1	210	135	139	11.9999
UGGA	chr1:226065085-226065378(-)$1	293	102	106	11.9999
UGGA	chr14:21462627-21462835(+)$1	208	8	12	11.9999
UGGA	chr10:102796165-102796413(+)$1	248	33	37	11.9999
UGGA	chr2:47273387-47273664(+)$1	277	89	93	11.9999
UGGA	chr20:61449776-61450005(+)$1	229	5	9	11.9999
UGGA	chr22:50876553-50876827(+)$1	274	18	22	11.9999
UGGA	chr11:803124-803356(-)$1	232	90	94	11.9999
UGGA	chr2:64371027-64371308(-)$1	281	122	126	11.9999

#otherMatches

#Struct PSSM
gggg	chr1:47028340-47028630(-)$1	290	149	153	11.9999
cc""	chr1:156521676-156521977(-)$1	301	151	155	11.9999
::::	chr11:73587959-73588217(+)$1	258	91	95	11.9999
:===	chr20:61457475-61457688(+)$1	213	35	39	11.9999
EEE{	chr19:7677044-7677276(+)$1	232	154	158	11.9999
d[gg	chr8:144643231-144643465(+)$1	234	49	53	11.9999
$ccc	chr1:205493336-205493586(+)$1	250	51	55	11.9999
dddd	chr6:168307749-168308001(+)$1	252	114	118	11.9999
JJJJ	chr22:50695462-50695720(-)$1	258	1	5	11.9999
ddd]	chr20:17605148-17605367(-)$1	219	72	76	11.9999
EEEE	chr16:16146539-16146773(+)$1	234	64	68	11.9999
ff!!	chr9:116151626-116151901(-)$1	275	155	159	11.9999
fff"	chr19:39436983-39437332(-)$1	349	50	54	11.9999
cmmm	chr2:61459494-61459714(-)$1	220	159	163	11.9999
]ddd	chr11:116654145-116654362(-)$1	217	35	39	11.9999
EYYG	chr13:111870015-111870304(+)$1	289	125	129	11.9999
{BBM	chr17:73826558-73826785(-)$1	227	16	20	11.9999
hhhh	chr2:85780317-85780564(-)$1	247	169	173	11.9999
dddd	chr2:27549946-27550193(-)$1	247	118	122	11.9999
ddqq	chr1:109825039-109825289(-)$1	250	38	42	11.9999
dddd	chr17:79567263-79567513(-)$1	250	79	83	11.9999
[ccc	chrX:70468768-70468998(-)$1	230	49	53	11.9999
JJJJ	chrX:54953999-54954234(+)$1	235	18	22	11.9999
iiii	chr17:40271956-40272234(-)$1	278	137	141	11.9999
gggg	chr9:134025901-134026157(+)$1	256	123	127	11.9999
qqqq	chr17:40812635-40812899(+)$1	264	71	75	11.9999
ccbb	chr17:73827225-73827440(-)$1	215	27	31	11.9999
a]ee	chr17:40497467-40497710(-)$1	243	57	61	11.9999
hhhh	chr9:135796645-135796904(-)$1	259	27	31	11.9999
ddd2	chr11:77669701-77669970(-)$1	269	72	76	11.9999
2ggg	chr16:2106544-2106773(+)$1	229	116	120	11.9999
[a[c	chr19:18960912-18961151(+)$1	239	51	55	11.9999
dd]g	chr9:111685037-111685267(-)$1	230	76	80	11.9999
GGGG	chr2:86297123-86297343(-)$1	220	106	110	11.9999
!!bb	chr9:95050306-95050563(-)$1	257	32	36	11.9999
EEE{	chr1:231954087-231954384(+)$1	297	56	60	11.9999
ccc[	chr3:4452446-4452765(-)$1	319	163	167	11.9999
c:::	chr12:132199263-132199534(+)$1	271	252	256	11.9999
ffff	chr20:60859069-60859357(+)$1	288	63	67	11.9999
ggg:	chr19:10887720-10887963(+)$1	243	112	116	11.9999
ffbb	chr19:17954087-17954329(-)$1	242	55	59	11.9999
bb22	chr6:31498971-31499195(-)$1	224	68	72	11.9999
i]a:	chr17:46053220-46053477(+)$1	257	81	85	11.9999
:FFF	chr1:156928448-156928721(-)$1	273	2	6	11.9999
gbbq	chr14:68272071-68272367(-)$1	296	134	138	11.9999
!bbr	chr4:83787876-83788111(-)$1	235	118	122	11.9999
{EEE	chr17:76122806-76123090(-)$1	284	47	51	11.9999
ddrr	chr7:111617101-111617438(-)$1	337	101	105	11.9999
ff::	chr8:145616113-145616340(+)$1	227	221	225	11.9999
ccc:	chr6:157469842-157470116(+)$1	274	12	16	11.9999
]a22	chr2:27702277-27702498(-)$1	221	46	50	11.9999
KBB:	chr16:89723886-89724117(-)$1	231	122	126	11.9999
ccc:	chr14:74753320-74753579(-)$1	259	96	100	11.9999
dddm	chr11:121444902-121445175(+)$1	273	65	69	11.9999
FFFK	chr19:13008016-13008237(+)$1	221	21	25	11.9999
gggg	chr3:48691271-48691518(-)$1	247	5	9	11.9999
ccc:	chr22:32011123-32011367(+)$1	244	231	235	11.9999
GGGG	chr17:18827139-18827393(+)$1	254	133	137	11.9999
ee33	chr14:24710124-24710359(-)$1	235	55	59	11.9999
FF~~	chr12:53701975-53702234(-)$1	259	241	245	11.9999
ggg#	chr17:43005318-43005521(-)$1	203	106	110	11.9999
iiii	chr10:118704339-118704622(-)$1	283	138	142	11.9999
FKKC	chr6:144814468-144814692(+)$1	224	5	9	11.9999
eeee	chr19:39435508-39435741(-)$1	233	50	54	11.9999
eeee	chr16:28880243-28880519(+)$1	276	26	30	11.9999
::::	chr3:48611203-48611422(-)$1	219	6	10	11.9999
c333	chr16:27512489-27512764(-)$1	275	116	120	11.9999
eeee	chr22:31985370-31985659(+)$1	289	125	129	11.9999
bbmm	chr16:3712855-3713069(-)$1	214	20	24	11.9999
ddd2	chr22:22324556-22324787(-)$1	231	157	161	11.9999
ffff	chr3:127336100-127336336(+)$1	236	58	62	11.9999
Gddd	chr9:116924961-116925164(+)$1	203	49	53	11.9999
:bbc	chr1:76255728-76256011(+)$1	283	0	4	11.9999
DDD:	chr1:246940232-246940505(+)$1	273	23	27	11.9999
cddd	chr22:42290723-42290951(+)$1	228	23	27	11.9999
ffff	chr11:61108806-61109016(+)$1	210	135	139	11.9999
ppa]	chr1:226065085-226065378(-)$1	293	102	106	11.9999
EE::	chr14:21462627-21462835(+)$1	208	8	12	11.9999
mbb:	chr10:102796165-102796413(+)$1	248	33	37	11.9999
FFFd	chr2:47273387-47273664(+)$1	277	89	93	11.9999
JJJJ	chr20:61449776-61450005(+)$1	229	5	9	11.9999
eeed	chr22:50876553-50876827(+)$1	274	18	22	11.9999
[amm	chr11:803124-803356(-)$1	232	90	94	11.9999
HHHH	chr2:64371027-64371308(-)$1	281	122	126	11.9999

#DB
((((	chr1:47028340-47028630(-)$1	1	149	153	11.9999
((..	chr1:156521676-156521977(-)$1	1	151	155	11.9999
....	chr11:73587959-73588217(+)$1	1	91	95	11.9999
.(((	chr20:61457475-61457688(+)$1	1	35	39	11.9999
(((.	chr19:7677044-7677276(+)$1	1	154	158	11.9999
(.((	chr8:144643231-144643465(+)$1	1	49	53	11.9999
.(((	chr1:205493336-205493586(+)$1	1	51	55	11.9999
))))	chr6:168307749-168308001(+)$1	1	114	118	11.9999
((((	chr22:50695462-50695720(-)$1	1	1	5	11.9999
))).	chr20:17605148-17605367(-)$1	1	72	76	11.9999
((((	chr16:16146539-16146773(+)$1	1	64	68	11.9999
((..	chr9:116151626-116151901(-)$1	1	155	159	11.9999
(((.	chr19:39436983-39437332(-)$1	1	50	54	11.9999
(...	chr2:61459494-61459714(-)$1	1	159	163	11.9999
.)))	chr11:116654145-116654362(-)$1	1	35	39	11.9999
)..)	chr13:111870015-111870304(+)$1	1	125	129	11.9999
.((.	chr17:73826558-73826785(-)$1	1	16	20	11.9999
))))	chr2:85780317-85780564(-)$1	1	169	173	11.9999
((((	chr2:27549946-27550193(-)$1	1	118	122	11.9999
((..	chr1:109825039-109825289(-)$1	1	38	42	11.9999
((((	chr17:79567263-79567513(-)$1	1	79	83	11.9999
.(((	chrX:70468768-70468998(-)$1	1	49	53	11.9999
((((	chrX:54953999-54954234(+)$1	1	18	22	11.9999
((((	chr17:40271956-40272234(-)$1	1	137	141	11.9999
((((	chr9:134025901-134026157(+)$1	1	123	127	11.9999
....	chr17:40812635-40812899(+)$1	1	71	75	11.9999
((((	chr17:73827225-73827440(-)$1	1	27	31	11.9999
).))	chr17:40497467-40497710(-)$1	1	57	61	11.9999
((((	chr9:135796645-135796904(-)$1	1	27	31	11.9999
))).	chr11:77669701-77669970(-)$1	1	72	76	11.9999
.)))	chr16:2106544-2106773(+)$1	1	116	120	11.9999
.(.(	chr19:18960912-18961151(+)$1	1	51	55	11.9999
)).)	chr9:111685037-111685267(-)$1	1	76	80	11.9999
))))	chr2:86297123-86297343(-)$1	1	106	110	11.9999
..((	chr9:95050306-95050563(-)$1	1	32	36	11.9999
(((.	chr1:231954087-231954384(+)$1	1	56	60	11.9999
(((.	chr3:4452446-4452765(-)$1	1	163	167	11.9999
)...	chr12:132199263-132199534(+)$1	1	252	256	11.9999
((((	chr20:60859069-60859357(+)$1	1	63	67	11.9999
))).	chr19:10887720-10887963(+)$1	1	112	116	11.9999
))))	chr19:17954087-17954329(-)$1	1	55	59	11.9999
))..	chr6:31498971-31499195(-)$1	1	68	72	11.9999
).).	chr17:46053220-46053477(+)$1	1	81	85	11.9999
.(((	chr1:156928448-156928721(-)$1	1	2	6	11.9999
(((.	chr14:68272071-68272367(-)$1	1	134	138	11.9999
.((.	chr4:83787876-83788111(-)$1	1	118	122	11.9999
.(((	chr17:76122806-76123090(-)$1	1	47	51	11.9999
((..	chr7:111617101-111617438(-)$1	1	101	105	11.9999
))..	chr8:145616113-145616340(+)$1	1	221	225	11.9999
))).	chr6:157469842-157470116(+)$1	1	12	16	11.9999
.)..	chr2:27702277-27702498(-)$1	1	46	50	11.9999
.((.	chr16:89723886-89724117(-)$1	1	122	126	11.9999
))).	chr14:74753320-74753579(-)$1	1	96	100	11.9999
(((.	chr11:121444902-121445175(+)$1	1	65	69	11.9999
(((.	chr19:13008016-13008237(+)$1	1	21	25	11.9999
((((	chr3:48691271-48691518(-)$1	1	5	9	11.9999
))).	chr22:32011123-32011367(+)$1	1	231	235	11.9999
))))	chr17:18827139-18827393(+)$1	1	133	137	11.9999
))..	chr14:24710124-24710359(-)$1	1	55	59	11.9999
))..	chr12:53701975-53702234(-)$1	1	241	245	11.9999
(((.	chr17:43005318-43005521(-)$1	1	106	110	11.9999
))))	chr10:118704339-118704622(-)$1	1	138	142	11.9999
(..(	chr6:144814468-144814692(+)$1	1	5	9	11.9999
))))	chr19:39435508-39435741(-)$1	1	50	54	11.9999
((((	chr16:28880243-28880519(+)$1	1	26	30	11.9999
....	chr3:48611203-48611422(-)$1	1	6	10	11.9999
)...	chr16:27512489-27512764(-)$1	1	116	120	11.9999
))))	chr22:31985370-31985659(+)$1	1	125	129	11.9999
((..	chr16:3712855-3713069(-)$1	1	20	24	11.9999
))).	chr22:22324556-22324787(-)$1	1	157	161	11.9999
((((	chr3:127336100-127336336(+)$1	1	58	62	11.9999
((((	chr9:116924961-116925164(+)$1	1	49	53	11.9999
.(((	chr1:76255728-76256011(+)$1	1	0	4	11.9999
(((.	chr1:246940232-246940505(+)$1	1	23	27	11.9999
((((	chr22:42290723-42290951(+)$1	1	23	27	11.9999
))))	chr11:61108806-61109016(+)$1	1	135	139	11.9999
..).	chr1:226065085-226065378(-)$1	1	102	106	11.9999
((..	chr14:21462627-21462835(+)$1	1	8	12	11.9999
.)).	chr10:102796165-102796413(+)$1	1	33	37	11.9999
((((	chr2:47273387-47273664(+)$1	1	89	93	11.9999
((((	chr20:61449776-61450005(+)$1	1	5	9	11.9999
)))(	chr22:50876553-50876827(+)$1	1	18	22	11.9999
.(..	chr11:803124-803356(-)$1	1	90	94	11.9999
))))	chr2:64371027-64371308(-)$1	1	122	126	11.9999

#PSSM
U : 0.97	u : 0.02	
G : 0.97	g : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	

#score	1007.9999999999995
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_UTR_m1_run1.nuc.txt

#NT
UUUUUUUUCUUUAUUUUUAU	chr18:32721532-32721806(+)$1	274	88	108	37.0408
AUUUUUUUCCUCUUAUUUCU	chr12:121248549-121248802(-)$1	253	89	109	26.1224
UGGUUUUUCUUUUUUGUUGU	chr1:70696662-70696947(+)$1	285	83	103	27.5510
UUUUUUGUGUUUGUAUUUUA	chr15:43738674-43738916(-)$1	242	69	89	26.3265
UUUUUUUUCUUUUCUUUUAG	chr12:102406826-102407078(-)$1	252	88	108	35.1020
uuguuuuucuuuuuuuuugu	chrX:106366643-106366895(-)$1	252	60	80	36.1224
uuuuuuuuuuuuuuuuuuuu	chr11:70281279-70281529(+)$1	250	80	100	39.8979
uuauuuuuauuuuauuuuuu	chr17:15406401-15406654(-)$1	253	84	104	31.9387
uuuauuuucuuuaauucuuc	chr18:23663987-23664248(-)$1	261	86	106	25.0000
uuuuuuuucuuuuuuuuuuu	chr1:222906347-222906584(+)$1	237	62	82	42.0408
AUAUUUUUCUUUUCUAUUUU	chrX:135958679-135958926(-)$1	247	84	104	27.9591
uguuuuuuguuuguuuuuac	chr19:8026973-8027222(-)$1	249	3	23	27.8571
UUUUUUUUCCAUUCUUUUCU	chr20:3944534-3944788(-)$1	254	87	107	30.5102
UUUGUUUUCUUUUUUUUCCC	chr2:62112074-62112327(-)$1	253	88	108	29.6938
UUUCUUUUCUUCCUUUUUCU	chr8:64081805-64082067(+)$1	262	87	107	29.2857
UUGUUUUUCUUUUUAUCUUG	chr5:65449177-65449427(+)$1	250	90	110	27.5510
UUAUUUAUUUAUUUUUUUCU	chr17:29551999-29552289(+)$1	290	91	111	26.6326
UUUUUUUUCCUUUCUUUUUC	chr6:79911316-79911555(-)$1	239	88	108	33.6734
UUUUUUUUCCUUUCCUUUUC	chr6:138192239-138192500(+)$1	261	88	108	30.0000
AUUUCUGUCUUUUUUUUUUU	chr16:30711821-30712090(+)$1	269	78	98	31.0204
AUUUUUGUCGUUUUUGUUUC	chr2:171804742-171805013(+)$1	271	92	112	25.3061
GUUuuuuuguuuguuuuuuu	chr1:24999060-24999296(+)$1	236	40	60	32.3469
uuuuuuuuuuuuuuuuuuuu	chr19:12833201-12833471(-)$1	270	72	92	39.8979
UUUAUUCUCUUUUCCUUUUU	chr3:37407458-37407710(+)$1	252	83	103	27.8571
uuuuuuuuuuuuuuuuuuGG	chr1:54395482-54395734(-)$1	252	43	63	35.3061
uuuuuuuuuuuuuuuuuuuu	chr9:134067483-134067736(+)$1	253	73	93	39.8979
CUUUCUUUCAUAUUUUUUCU	chr3:182662826-182663076(-)$1	250	86	106	24.2857
UUUUUUUUUUUUCCUUUUGU	chr4:164440373-164440621(+)$1	248	88	108	31.8367
uuuuuuuucuuuuuuuuuuu	chr1:222906335-222906547(+)$1	212	74	94	42.0408
UUUUUGUUUUGUUUUUUUCA	chr15:63922678-63922940(-)$1	262	85	105	27.2448
cuuuuugucuuuauuuuucu	chr5:134126049-134126300(+)$1	251	79	99	30.4081
UCUUUUUUUUUUUUUCUUAA	chr2:152293233-152293494(+)$1	261	85	105	26.6326
UUUAUGGUAUUUUUUUUUUU	chr1:155883999-155884258(-)$1	259	83	103	27.9591
uuuuuuuucucucucuuuuu	chr9:134305368-134305614(+)$1	246	64	84	31.0204
UUGUUUUUCCCUUUUUUUCC	chr7:26230678-26230944(-)$1	266	98	118	27.0408
AUUUUUGUCUUUAGUCUUUU	chr18:33605495-33605781(-)$1	286	81	101	24.8979
UUUUUUGUCUCCUUUUCUUU	chr7:104681155-104681452(+)$1	297	103	123	26.8367
uuucuuuucuucuuuuuuau	chr1:211433337-211433598(+)$1	261	59	79	32.3469
UUUUUUUUUUUUGCUUUUGU	chr15:68434183-68434432(+)$1	249	28	48	32.1428
uuuuuuuucuuuuccuuuuu	chr11:33307849-33308101(+)$1	252	73	93	35.7142
UAUUUGUUAUUUUGUUUUUG	chr3:43740650-43740881(+)$1	231	88	108	24.7959
uuuuuuuuauuauuuuuuuu	chr3:113528799-113529045(+)$1	246	84	104	35.3061
UUUGUUUUGUUUUGUUUUCU	chr1:27108245-27108506(+)$1	261	94	114	30.5102
UUUUUUUUCUUUGUUUCCAG	chr22:19398138-19398413(-)$1	275	92	112	25.9183
uuuuuuuuuuuuuuuuuuuu	chr14:50361089-50361339(+)$1	250	82	102	39.8979
AUUUUUUUCUUUGUUUUUAC	chr5:126883846-126884129(+)$1	283	14	34	31.7346
UUUUUCUACGUUUUUAUUUU	chr19:54972198-54972440(+)$1	242	78	98	24.8979
AUUUUCUUCCUUUUCUUUCC	chr6:83896645-83896907(-)$1	262	90	110	23.6734

#otherMatches

#Struct PSSM
ggggggg333iiiiiiiii:	chr6:4063194-4063450(+)$1	256	204	224	26.6326
:::::::::HHHHHHHHLLL	chr18:32721532-32721806(+)$1	274	88	108	37.0408
::::::::EEEEE{DDDDa[	chr12:121248549-121248802(-)$1	253	89	109	26.1224
GGGG{EEEEE:::ffffff!	chr1:70696662-70696947(+)$1	285	83	103	27.5510
g$$$$$ffffff%%%%%%dd	chr15:43738674-43738916(-)$1	242	69	89	26.3265
::::GGGGGGGKKEEEEE:d	chr12:102406826-102407078(-)$1	252	88	108	35.1020
EE{EEEEE::::::::::ii	chrX:106366643-106366895(-)$1	252	60	80	36.1224
::::::::::::::eeeeeo	chr11:70281279-70281529(+)$1	250	80	100	39.8979
::::::::::eeeeennnnn	chr17:15406401-15406654(-)$1	253	84	104	31.9387
::::::::::::::::::bb	chr18:23663987-23664248(-)$1	261	86	106	25.0000
::::::::::::::::::::	chr1:222906347-222906584(+)$1	237	62	82	42.0408
d333dddd]dddd333gggg	chrX:135958679-135958926(-)$1	247	84	104	27.9591
:::::::::::::::::::F	chr19:8026973-8027222(-)$1	249	3	23	27.8571
::::::::::::::::::::	chr20:3944534-3944788(-)$1	254	87	107	30.5102
wwwwwwwwiiiiiiiii:CC	chr2:62112074-62112327(-)$1	253	88	108	29.6938
ff!!gggggggffffff###	chr8:64081805-64082067(+)$1	262	87	107	29.2857
ccc22iiiiiiiiiccceee	chr5:65449177-65449427(+)$1	250	90	110	27.5510
:::::::::::::::fffff	chr17:29551999-29552289(+)$1	290	91	111	26.6326
666666dddd]ccc55555d	chr6:79911316-79911555(-)$1	239	88	108	33.6734
666666ggggggg:ccceee	chr6:138192239-138192500(+)$1	261	88	108	30.0000
::::::::::::::::::::	chr16:30711821-30712090(+)$1	269	78	98	31.0204
::::::::hhhhhhhh$$$$	chr2:171804742-171805013(+)$1	271	92	112	25.3061
ee]ccc::EEEEEOOOOOOH	chr1:24999060-24999296(+)$1	236	40	60	32.3469
::::::::::::::::::::	chr19:12833201-12833471(-)$1	270	72	92	39.8979
JJJJJJJJJ:::::::::::	chr3:37407458-37407710(+)$1	252	83	103	27.8571
::::::::::::::::DDDD	chr1:54395482-54395734(-)$1	252	43	63	35.3061
^^^^^^^^^^^^^^^^^^^^	chr9:134067483-134067736(+)$1	253	73	93	39.8979
::::::::::::::::::::	chr3:182662826-182663076(-)$1	250	86	106	24.2857
TTTTTTTTJJJJJJJJJJJJ	chr4:164440373-164440621(+)$1	248	88	108	31.8367
::::::::::::::::::::	chr1:222906335-222906547(+)$1	212	74	94	42.0408
iiiiiii4444dddd22ddd	chr15:63922678-63922940(-)$1	262	85	105	27.2448
:::::dddd!!ffffffccc	chr5:134126049-134126300(+)$1	251	79	99	30.4081
::::::::::::::::::::	chr2:152293233-152293494(+)$1	261	85	105	26.6326
FFF:::ccc[eeeee[eeee	chr1:155883999-155884258(-)$1	259	83	103	27.9591
::::::::::::::::::::	chr9:134305368-134305614(+)$1	246	64	84	31.0204
eee:::::::::::::::::	chr7:26230678-26230944(-)$1	266	98	118	27.0408
dd[eeeee"""ccc"""ggg	chr18:33605495-33605781(-)$1	286	81	101	24.8979
E::::ccc[ccc"""ddddo	chr7:104681155-104681452(+)$1	297	103	123	26.8367
^^^^^^^^^^^^^^^^^^^^	chr1:211433337-211433598(+)$1	261	59	79	32.3469
tttttttttttccc333fff	chr15:68434183-68434432(+)$1	249	28	48	32.1428
^^^^^^^^^^^^^^^^====	chr11:33307849-33308101(+)$1	252	73	93	35.7142
:::::iiiiiiiii!!eeee	chr3:43740650-43740881(+)$1	231	88	108	24.7959
::::::::::::::::::::	chr3:113528799-113529045(+)$1	246	84	104	35.3061
^^^^^^^^^^^^^^^^^^^^	chr1:27108245-27108506(+)$1	261	94	114	30.5102
f================[ee	chr22:19398138-19398413(-)$1	275	92	112	25.9183
+++++++++++++++++++h	chr14:50361089-50361339(+)$1	250	82	102	39.8979
d^^^^^^^^^^^^^^^^^^^	chr5:126883846-126884129(+)$1	283	14	34	31.7346
zzzzzzzzzzzzzzzzzfff	chr19:54972198-54972440(+)$1	242	78	98	24.8979
JJJJJ::::::::::iiiii	chr6:83896645-83896907(-)$1	262	90	110	23.6734

#DB
)))))))...))))))))).	chr6:4063194-4063450(+)$1	1	204	224	26.6326
.........((((((((...	chr18:32721532-32721806(+)$1	1	88	108	37.0408
........(((((.(((((.	chr12:121248549-121248802(-)$1	1	89	109	26.1224
((((.(((((...((((((.	chr1:70696662-70696947(+)$1	1	83	103	27.5510
(.....((((((......((	chr15:43738674-43738916(-)$1	1	69	89	26.3265
....(((((((..(((((.(	chr12:102406826-102407078(-)$1	1	88	108	35.1020
((.(((((..........((	chrX:106366643-106366895(-)$1	1	60	80	36.1224
..............(((((.	chr11:70281279-70281529(+)$1	1	80	100	39.8979
..........(((((.....	chr17:15406401-15406654(-)$1	1	84	104	31.9387
..................((	chr18:23663987-23664248(-)$1	1	86	106	25.0000
....................	chr1:222906347-222906584(+)$1	1	62	82	42.0408
)...)))).))))...))))	chrX:135958679-135958926(-)$1	1	84	104	27.9591
...................(	chr19:8026973-8027222(-)$1	1	3	23	27.8571
....................	chr20:3944534-3944788(-)$1	1	87	107	30.5102
........))))))))).))	chr2:62112074-62112327(-)$1	1	88	108	29.6938
((..(((((((((((((...	chr8:64081805-64082067(+)$1	1	87	107	29.2857
)))..)))))))))))))))	chr5:65449177-65449427(+)$1	1	90	110	27.5510
...............(((((	chr17:29551999-29552289(+)$1	1	91	111	26.6326
......)))).))).....)	chr6:79911316-79911555(-)$1	1	88	108	33.6734
......))))))).((((((	chr6:138192239-138192500(+)$1	1	88	108	30.0000
....................	chr16:30711821-30712090(+)$1	1	78	98	31.0204
........((((((((....	chr2:171804742-171805013(+)$1	1	92	112	25.3061
)).)))..(((((......(	chr1:24999060-24999296(+)$1	1	40	60	32.3469
....................	chr19:12833201-12833471(-)$1	1	72	92	39.8979
(((((((((...........	chr3:37407458-37407710(+)$1	1	83	103	27.8571
................((((	chr1:54395482-54395734(-)$1	1	43	63	35.3061
....................	chr9:134067483-134067736(+)$1	1	73	93	39.8979
....................	chr3:182662826-182663076(-)$1	1	86	106	24.2857
........((((((((((((	chr4:164440373-164440621(+)$1	1	88	108	31.8367
....................	chr1:222906335-222906547(+)$1	1	74	94	42.0408
)))))))....))))..)))	chr15:63922678-63922940(-)$1	1	85	105	27.2448
.....((((..(((((((((	chr5:134126049-134126300(+)$1	1	79	99	30.4081
....................	chr2:152293233-152293494(+)$1	1	85	105	26.6326
(((...(((.(((((.((((	chr1:155883999-155884258(-)$1	1	83	103	27.9591
....................	chr9:134305368-134305614(+)$1	1	64	84	31.0204
))).................	chr7:26230678-26230944(-)$1	1	98	118	27.0408
((.(((((...(((...(((	chr18:33605495-33605781(-)$1	1	81	101	24.8979
(....(((.(((...((((.	chr7:104681155-104681452(+)$1	1	103	123	26.8367
....................	chr1:211433337-211433598(+)$1	1	59	79	32.3469
...........)))...)))	chr15:68434183-68434432(+)$1	1	28	48	32.1428
................))))	chr11:33307849-33308101(+)$1	1	73	93	35.7142
.....(((((((((..((((	chr3:43740650-43740881(+)$1	1	88	108	24.7959
....................	chr3:113528799-113529045(+)$1	1	84	104	35.3061
....................	chr1:27108245-27108506(+)$1	1	94	114	30.5102
)((((((((((((((((.((	chr22:19398138-19398413(-)$1	1	92	112	25.9183
...................(	chr14:50361089-50361339(+)$1	1	82	102	39.8979
(...................	chr5:126883846-126884129(+)$1	1	14	34	31.7346
.................)))	chr19:54972198-54972440(+)$1	1	78	98	24.8979
(((((..........(((((	chr6:83896645-83896907(-)$1	1	90	110	23.6734

#PSSM
U : 0.48	u : 0.30	A : 0.14	G : 0.02	C : 0.02	c : 0.02	
U : 0.61	u : 0.30	G : 0.02	g : 0.02	C : 0.02	A : 0.02	
U : 0.57	u : 0.28	G : 0.06	A : 0.04	g : 0.02	a : 0.02	
U : 0.55	u : 0.30	G : 0.04	A : 0.04	a : 0.02	C : 0.02	c : 0.02	
U : 0.61	u : 0.34	C : 0.04	
U : 0.55	u : 0.34	G : 0.06	C : 0.04	
U : 0.46	u : 0.32	G : 0.14	A : 0.02	C : 0.02	g : 0.02	
U : 0.63	u : 0.34	A : 0.02	
C : 0.46	c : 0.16	u : 0.10	U : 0.10	G : 0.04	a : 0.04	g : 0.04	A : 0.04	
U : 0.46	u : 0.34	C : 0.12	G : 0.04	A : 0.02	
U : 0.53	u : 0.32	A : 0.06	C : 0.04	G : 0.02	c : 0.02	
U : 0.55	u : 0.30	C : 0.06	A : 0.04	c : 0.02	a : 0.02	
U : 0.48	u : 0.24	G : 0.08	A : 0.04	a : 0.04	g : 0.04	C : 0.04	c : 0.02	
U : 0.42	u : 0.28	C : 0.16	G : 0.06	a : 0.04	c : 0.02	
U : 0.53	u : 0.30	A : 0.06	C : 0.06	c : 0.04	
U : 0.53	u : 0.34	G : 0.04	A : 0.04	C : 0.04	
U : 0.59	u : 0.32	C : 0.06	c : 0.02	
U : 0.61	u : 0.34	C : 0.04	
U : 0.26	u : 0.24	C : 0.20	A : 0.12	G : 0.08	a : 0.04	g : 0.02	c : 0.02	
U : 0.34	u : 0.28	C : 0.14	G : 0.12	A : 0.06	c : 0.04	

#score	1505.7142857142867
#seq	49
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_UTR_m2_run1.nuc.txt

#NT
GGC	chr2:216300625-216300871(-)$1	246	20	23	9.0000
GGC	chr17:37076016-37076317(+)$1	301	66	69	9.0000
GGC	chr6:74230388-74230636(-)$1	248	57	60	9.0000
GGC	chr16:30107137-30107408(-)$1	271	10	13	9.0000
GGC	chr19:49605362-49605605(+)$1	243	21	24	9.0000
GGC	chr17:26903718-26903986(-)$1	268	12	15	9.0000
GGC	chr18:47017986-47018197(-)$1	211	12	15	9.0000
GGC	chr11:93464041-93464252(-)$1	211	0	3	9.0000
GGC	chr2:85770357-85770648(+)$1	291	1	4	9.0000
GGC	chr6:31508813-31509030(-)$1	217	5	8	9.0000
GGC	chr5:179050127-179050360(-)$1	233	6	9	9.0000
GGC	chr11:75111357-75111577(+)$1	220	30	33	9.0000
GGC	chr3:12881714-12881964(-)$1	250	86	89	9.0000
ggc	chr17:8076709-8076913(-)$1	204	48	51	9.0000
GGC	chr19:49993154-49993363(+)$1	209	5	8	9.0000
GGC	chr3:51533787-51534066(-)$1	279	45	48	9.0000
GGC	chr19:41271066-41271310(+)$1	244	45	48	9.0000
GGC	chr19:49606565-49606838(+)$1	273	65	68	9.0000
ggc	chr3:13461567-13461855(-)$1	288	6	9	9.0000
GGC	chr6:33171653-33171900(+)$1	247	7	10	9.0000
GGC	chr1:228327931-228328179(+)$1	248	10	13	9.0000
GGC	chr12:56991291-56991554(-)$1	263	59	62	9.0000
GGC	chr16:89980231-89980509(+)$1	278	4	7	9.0000
GGC	chr19:1104624-1104875(+)$1	251	8	11	9.0000
GGC	chr8:30669826-30670090(-)$1	264	10	13	9.0000
GGC	chr19:5140266-5140589(+)$1	323	9	12	9.0000
GGC	chr7:106809382-106809695(+)$1	313	0	3	9.0000
GGC	chr20:62330505-62330761(-)$1	256	10	13	9.0000
GGC	chr17:27047518-27047734(+)$1	216	120	123	9.0000
GGC	chr17:27047482-27047696(+)$1	214	156	159	9.0000
GGC	chr12:125398972-125399243(-)$1	271	38	41	9.0000
GGC	chr19:49993167-49993402(+)$1	235	28	31	9.0000
GGC	chr1:27561121-27561385(+)$1	264	2	5	9.0000
GGC	chr19:59055857-59056094(+)$1	237	11	14	9.0000
GGC	chr8:33370962-33371194(+)$1	232	2	5	9.0000
GGC	chr1:42643255-42643525(-)$1	270	149	152	9.0000
GGC	chr11:5275503-5275744(-)$1	241	46	49	9.0000
GGC	chr19:49606058-49606297(+)$1	239	46	49	9.0000
GGC	chr1:249151745-249152050(-)$1	305	5	8	9.0000
GGC	chr19:49606638-49606885(+)$1	247	87	90	9.0000
GGC	chr11:122929517-122929782(-)$1	265	41	44	9.0000
GGC	chr5:137685007-137685289(+)$1	282	29	32	9.0000
GGC	chr3:186330775-186331086(+)$1	311	29	32	9.0000
GGC	chr19:54971678-54971949(+)$1	271	0	3	9.0000
GGC	chr16:23478554-23478842(-)$1	288	47	50	9.0000
GGC	chr16:89981290-89981535(+)$1	245	124	127	9.0000
GGC	chr17:73775186-73775491(-)$1	305	31	34	9.0000
GGC	chr17:27050620-27050857(+)$1	237	1	4	9.0000
GGC	chr19:41271010-41271249(+)$1	239	8	11	9.0000
GGC	chr16:1413724-1413989(-)$1	265	44	47	9.0000
GGC	chr11:93464065-93464274(-)$1	209	22	25	9.0000
GGC	chr15:66795595-66795798(-)$1	203	14	17	9.0000
GGC	chr17:8076713-8076925(-)$1	212	5	8	9.0000
GGC	chr5:180670207-180670479(-)$1	272	77	80	9.0000
ggc	chr11:47379918-47380227(-)$1	309	30	33	9.0000
GGC	chr6:161574463-161574706(-)$1	243	16	19	9.0000
GGC	chr11:93466532-93466785(-)$1	253	42	45	9.0000
GGC	chr6:31804748-31804956(+)$1	208	204	207	9.0000
ggc	chr11:122929515-122929717(-)$1	202	71	74	9.0000
GGC	chr19:2270196-2270448(+)$1	252	4	7	9.0000
GGC	chr6:31804774-31804985(+)$1	211	178	181	9.0000
ggc	chr12:7052897-7053144(+)$1	247	114	117	9.0000
GGC	chr8:33370931-33371148(+)$1	217	22	25	9.0000
GGC	chr18:47017932-47018163(-)$1	231	62	65	9.0000
GGC	chr17:27047496-27047718(+)$1	222	142	145	9.0000
GGC	chr8:33370956-33371162(+)$1	206	8	11	9.0000
GGC	chr6:31804756-31804974(+)$1	218	196	199	9.0000
GGC	chr19:54971466-54971695(+)$1	229	49	52	9.0000
ggc	chr16:48418955-48419243(-)$1	288	1	4	9.0000
GGC	chr18:47017972-47018186(-)$1	214	1	4	9.0000
GGC	chr19:575249-575520(+)$1	271	11	14	9.0000
ggc	chr22:20067945-20068242(+)$1	297	2	5	9.0000
GGC	chr6:31508840-31509044(-)$1	204	19	22	9.0000
GGC	chr18:47017963-47018172(-)$1	209	71	74	9.0000
GGC	chrX:154003010-154003284(+)$1	274	9	12	9.0000
GGC	chr22:19929020-19929366(-)$1	346	3	6	9.0000
GGC	chr7:5569351-5569625(-)$1	274	1	4	9.0000
GGC	chr2:21266704-21267036(-)$1	332	2	5	9.0000
GGC	chr6:31802964-31803167(+)$1	203	26	29	9.0000
GGC	chr1:155658321-155658569(-)$1	248	20	23	9.0000
GGC	chr17:76124556-76124809(-)$1	253	2	5	9.0000
GGC	chr6:31937067-31937359(+)$1	292	6	9	9.0000
GGC	chr3:133465151-133465428(+)$1	277	43	46	9.0000
GGC	chr6:31802967-31803197(+)$1	230	23	26	9.0000
GGC	chr1:178994961-178995236(+)$1	275	3	6	9.0000
GGC	chr15:93426497-93426753(+)$1	256	1	4	9.0000
GGC	chr9:123638030-123638293(-)$1	263	43	46	9.0000
GGC	chr17:8076752-8076957(-)$1	205	37	40	9.0000
GGC	chr12:125398883-125399120(-)$1	237	6	9	9.0000
GGC	chr17:8076725-8076952(-)$1	227	32	35	9.0000
GGC	chr11:75111377-75111607(+)$1	230	10	13	9.0000
GGC	chr17:42401880-42402159(-)$1	279	12	15	9.0000
GGC	chr16:89627003-89627219(+)$1	216	6	9	9.0000
GGC	chr15:93426553-93426923(+)$1	370	2	5	9.0000
GGC	chr1:182360379-182360641(-)$1	262	13	16	9.0000
GGC	chr1:28832474-28832697(+)$1	223	36	39	9.0000
GGC	chr15:93426437-93426697(+)$1	260	61	64	9.0000

#otherMatches

#Struct PSSM
22b	chr2:158731844-158732189(-)$1	345	81	84	9.0000
EEE	chr2:216300625-216300871(-)$1	246	20	23	9.0000
hhh	chr17:37076016-37076317(+)$1	301	66	69	9.0000
FFF	chr6:74230388-74230636(-)$1	248	57	60	9.0000
ee!	chr16:30107137-30107408(-)$1	271	10	13	9.0000
ee!	chr19:49605362-49605605(+)$1	243	21	24	9.0000
"cc	chr17:26903718-26903986(-)$1	268	12	15	9.0000
CCC	chr18:47017986-47018197(-)$1	211	12	15	9.0000
:BB	chr11:93464041-93464252(-)$1	211	0	3	9.0000
:::	chr2:85770357-85770648(+)$1	291	1	4	9.0000
FFF	chr6:31508813-31509030(-)$1	217	5	8	9.0000
d[a	chr5:179050127-179050360(-)$1	233	6	9	9.0000
FFF	chr11:75111357-75111577(+)$1	220	30	33	9.0000
:ff	chr3:12881714-12881964(-)$1	250	86	89	9.0000
edd	chr17:8076709-8076913(-)$1	204	48	51	9.0000
fff	chr19:49993154-49993363(+)$1	209	5	8	9.0000
::B	chr3:51533787-51534066(-)$1	279	45	48	9.0000
cEE	chr19:41271066-41271310(+)$1	244	45	48	9.0000
g::	chr19:49606565-49606838(+)$1	273	65	68	9.0000
HHH	chr3:13461567-13461855(-)$1	288	6	9	9.0000
FFF	chr6:33171653-33171900(+)$1	247	7	10	9.0000
CC{	chr1:228327931-228328179(+)$1	248	10	13	9.0000
[bb	chr12:56991291-56991554(-)$1	263	59	62	9.0000
hhh	chr16:89980231-89980509(+)$1	278	4	7	9.0000
###	chr19:1104624-1104875(+)$1	251	8	11	9.0000
KKC	chr8:30669826-30670090(-)$1	264	10	13	9.0000
Cdd	chr19:5140266-5140589(+)$1	323	9	12	9.0000
:BB	chr7:106809382-106809695(+)$1	313	0	3	9.0000
bgg	chr20:62330505-62330761(-)$1	256	10	13	9.0000
5ee	chr17:27047518-27047734(+)$1	216	120	123	9.0000
5ee	chr17:27047482-27047696(+)$1	214	156	159	9.0000
ccf	chr12:125398972-125399243(-)$1	271	38	41	9.0000
III	chr19:49993167-49993402(+)$1	235	28	31	9.0000
::h	chr1:27561121-27561385(+)$1	264	2	5	9.0000
[hh	chr19:59055857-59056094(+)$1	237	11	14	9.0000
FFF	chr8:33370962-33371194(+)$1	232	2	5	9.0000
ggg	chr1:42643255-42643525(-)$1	270	149	152	9.0000
sss	chr11:5275503-5275744(-)$1	241	46	49	9.0000
ccc	chr19:49606058-49606297(+)$1	239	46	49	9.0000
!cc	chr1:249151745-249152050(-)$1	305	5	8	9.0000
===	chr19:49606638-49606885(+)$1	247	87	90	9.0000
euu	chr11:122929517-122929782(-)$1	265	41	44	9.0000
eem	chr5:137685007-137685289(+)$1	282	29	32	9.0000
bb!	chr3:186330775-186331086(+)$1	311	29	32	9.0000
EEE	chr19:54971678-54971949(+)$1	271	0	3	9.0000
ccd	chr16:23478554-23478842(-)$1	288	47	50	9.0000
ggg	chr16:89981290-89981535(+)$1	245	124	127	9.0000
hhh	chr17:73775186-73775491(-)$1	305	31	34	9.0000
:::	chr17:27050620-27050857(+)$1	237	1	4	9.0000
JJJ	chr19:41271010-41271249(+)$1	239	8	11	9.0000
ddd	chr16:1413724-1413989(-)$1	265	44	47	9.0000
ccc	chr11:93464065-93464274(-)$1	209	22	25	9.0000
BKK	chr15:66795595-66795798(-)$1	203	14	17	9.0000
:::	chr17:8076713-8076925(-)$1	212	5	8	9.0000
dbb	chr5:180670207-180670479(-)$1	272	77	80	9.0000
CCC	chr11:47379918-47380227(-)$1	309	30	33	9.0000
EEE	chr6:161574463-161574706(-)$1	243	16	19	9.0000
eee	chr11:93466532-93466785(-)$1	253	42	45	9.0000
CCB	chr6:31804748-31804956(+)$1	208	204	207	9.0000
{CC	chr11:122929515-122929717(-)$1	202	71	74	9.0000
DDD	chr19:2270196-2270448(+)$1	252	4	7	9.0000
ddd	chr6:31804774-31804985(+)$1	211	178	181	9.0000
===	chr12:7052897-7053144(+)$1	247	114	117	9.0000
III	chr8:33370931-33371148(+)$1	217	22	25	9.0000
JJ{	chr18:47017932-47018163(-)$1	231	62	65	9.0000
5ee	chr17:27047496-27047718(+)$1	222	142	145	9.0000
FFF	chr8:33370956-33371162(+)$1	206	8	11	9.0000
ddd	chr6:31804756-31804974(+)$1	218	196	199	9.0000
eee	chr19:54971466-54971695(+)$1	229	49	52	9.0000
DDD	chr16:48418955-48419243(-)$1	288	1	4	9.0000
ddd	chr18:47017972-47018186(-)$1	214	1	4	9.0000
ppp	chr19:575249-575520(+)$1	271	11	14	9.0000
EEE	chr22:20067945-20068242(+)$1	297	2	5	9.0000
ccc	chr6:31508840-31509044(-)$1	204	19	22	9.0000
hhh	chr18:47017963-47018172(-)$1	209	71	74	9.0000
ddd	chrX:154003010-154003284(+)$1	274	9	12	9.0000
CCC	chr22:19929020-19929366(-)$1	346	3	6	9.0000
:dd	chr7:5569351-5569625(-)$1	274	1	4	9.0000
iii	chr2:21266704-21267036(-)$1	332	2	5	9.0000
GGG	chr6:31802964-31803167(+)$1	203	26	29	9.0000
KKG	chr1:155658321-155658569(-)$1	248	20	23	9.0000
FFF	chr17:76124556-76124809(-)$1	253	2	5	9.0000
BDD	chr6:31937067-31937359(+)$1	292	6	9	9.0000
BBc	chr3:133465151-133465428(+)$1	277	43	46	9.0000
GGG	chr6:31802967-31803197(+)$1	230	23	26	9.0000
:CC	chr1:178994961-178995236(+)$1	275	3	6	9.0000
hhh	chr15:93426497-93426753(+)$1	256	1	4	9.0000
iii	chr9:123638030-123638293(-)$1	263	43	46	9.0000
D::	chr17:8076752-8076957(-)$1	205	37	40	9.0000
iii	chr12:125398883-125399120(-)$1	237	6	9	9.0000
DKK	chr17:8076725-8076952(-)$1	227	32	35	9.0000
:::	chr11:75111377-75111607(+)$1	230	10	13	9.0000
C{F	chr17:42401880-42402159(-)$1	279	12	15	9.0000
Cgg	chr16:89627003-89627219(+)$1	216	6	9	9.0000
Cbb	chr15:93426553-93426923(+)$1	370	2	5	9.0000
ccc	chr1:182360379-182360641(-)$1	262	13	16	9.0000
Dff	chr1:28832474-28832697(+)$1	223	36	39	9.0000
hhh	chr15:93426437-93426697(+)$1	260	61	64	9.0000

#DB
..)	chr2:158731844-158732189(-)$1	1	81	84	9.0000
(((	chr2:216300625-216300871(-)$1	1	20	23	9.0000
(((	chr17:37076016-37076317(+)$1	1	66	69	9.0000
(((	chr6:74230388-74230636(-)$1	1	57	60	9.0000
((.	chr16:30107137-30107408(-)$1	1	10	13	9.0000
((.	chr19:49605362-49605605(+)$1	1	21	24	9.0000
.((	chr17:26903718-26903986(-)$1	1	12	15	9.0000
(((	chr18:47017986-47018197(-)$1	1	12	15	9.0000
.((	chr11:93464041-93464252(-)$1	1	0	3	9.0000
...	chr2:85770357-85770648(+)$1	1	1	4	9.0000
(((	chr6:31508813-31509030(-)$1	1	5	8	9.0000
(.(	chr5:179050127-179050360(-)$1	1	6	9	9.0000
(((	chr11:75111357-75111577(+)$1	1	30	33	9.0000
.((	chr3:12881714-12881964(-)$1	1	86	89	9.0000
)))	chr17:8076709-8076913(-)$1	1	48	51	9.0000
(((	chr19:49993154-49993363(+)$1	1	5	8	9.0000
..(	chr3:51533787-51534066(-)$1	1	45	48	9.0000
)((	chr19:41271066-41271310(+)$1	1	45	48	9.0000
)..	chr19:49606565-49606838(+)$1	1	65	68	9.0000
(((	chr3:13461567-13461855(-)$1	1	6	9	9.0000
(((	chr6:33171653-33171900(+)$1	1	7	10	9.0000
((.	chr1:228327931-228328179(+)$1	1	10	13	9.0000
.((	chr12:56991291-56991554(-)$1	1	59	62	9.0000
(((	chr16:89980231-89980509(+)$1	1	4	7	9.0000
...	chr19:1104624-1104875(+)$1	1	8	11	9.0000
..(	chr8:30669826-30670090(-)$1	1	10	13	9.0000
(((	chr19:5140266-5140589(+)$1	1	9	12	9.0000
.((	chr7:106809382-106809695(+)$1	1	0	3	9.0000
(((	chr20:62330505-62330761(-)$1	1	10	13	9.0000
.))	chr17:27047518-27047734(+)$1	1	120	123	9.0000
.))	chr17:27047482-27047696(+)$1	1	156	159	9.0000
(((	chr12:125398972-125399243(-)$1	1	38	41	9.0000
(((	chr19:49993167-49993402(+)$1	1	28	31	9.0000
..(	chr1:27561121-27561385(+)$1	1	2	5	9.0000
.((	chr19:59055857-59056094(+)$1	1	11	14	9.0000
(((	chr8:33370962-33371194(+)$1	1	2	5	9.0000
)))	chr1:42643255-42643525(-)$1	1	149	152	9.0000
...	chr11:5275503-5275744(-)$1	1	46	49	9.0000
(((	chr19:49606058-49606297(+)$1	1	46	49	9.0000
.((	chr1:249151745-249152050(-)$1	1	5	8	9.0000
(((	chr19:49606638-49606885(+)$1	1	87	90	9.0000
(..	chr11:122929517-122929782(-)$1	1	41	44	9.0000
((.	chr5:137685007-137685289(+)$1	1	29	32	9.0000
((.	chr3:186330775-186331086(+)$1	1	29	32	9.0000
(((	chr19:54971678-54971949(+)$1	1	0	3	9.0000
)))	chr16:23478554-23478842(-)$1	1	47	50	9.0000
)))	chr16:89981290-89981535(+)$1	1	124	127	9.0000
(((	chr17:73775186-73775491(-)$1	1	31	34	9.0000
...	chr17:27050620-27050857(+)$1	1	1	4	9.0000
(((	chr19:41271010-41271249(+)$1	1	8	11	9.0000
)))	chr16:1413724-1413989(-)$1	1	44	47	9.0000
(((	chr11:93464065-93464274(-)$1	1	22	25	9.0000
(..	chr15:66795595-66795798(-)$1	1	14	17	9.0000
...	chr17:8076713-8076925(-)$1	1	5	8	9.0000
)))	chr5:180670207-180670479(-)$1	1	77	80	9.0000
(((	chr11:47379918-47380227(-)$1	1	30	33	9.0000
(((	chr6:161574463-161574706(-)$1	1	16	19	9.0000
(((	chr11:93466532-93466785(-)$1	1	42	45	9.0000
)))	chr6:31804748-31804956(+)$1	1	204	207	9.0000
.((	chr11:122929515-122929717(-)$1	1	71	74	9.0000
(((	chr19:2270196-2270448(+)$1	1	4	7	9.0000
(((	chr6:31804774-31804985(+)$1	1	178	181	9.0000
(((	chr12:7052897-7053144(+)$1	1	114	117	9.0000
(((	chr8:33370931-33371148(+)$1	1	22	25	9.0000
((.	chr18:47017932-47018163(-)$1	1	62	65	9.0000
.))	chr17:27047496-27047718(+)$1	1	142	145	9.0000
(((	chr8:33370956-33371162(+)$1	1	8	11	9.0000
(((	chr6:31804756-31804974(+)$1	1	196	199	9.0000
)))	chr19:54971466-54971695(+)$1	1	49	52	9.0000
(((	chr16:48418955-48419243(-)$1	1	1	4	9.0000
(((	chr18:47017972-47018186(-)$1	1	1	4	9.0000
...	chr19:575249-575520(+)$1	1	11	14	9.0000
(((	chr22:20067945-20068242(+)$1	1	2	5	9.0000
)))	chr6:31508840-31509044(-)$1	1	19	22	9.0000
(((	chr18:47017963-47018172(-)$1	1	71	74	9.0000
(((	chrX:154003010-154003284(+)$1	1	9	12	9.0000
(((	chr22:19929020-19929366(-)$1	1	3	6	9.0000
.((	chr7:5569351-5569625(-)$1	1	1	4	9.0000
(((	chr2:21266704-21267036(-)$1	1	2	5	9.0000
(((	chr6:31802964-31803167(+)$1	1	26	29	9.0000
..(	chr1:155658321-155658569(-)$1	1	20	23	9.0000
(((	chr17:76124556-76124809(-)$1	1	2	5	9.0000
(((	chr6:31937067-31937359(+)$1	1	6	9	9.0000
(((	chr3:133465151-133465428(+)$1	1	43	46	9.0000
(((	chr6:31802967-31803197(+)$1	1	23	26	9.0000
.((	chr1:178994961-178995236(+)$1	1	3	6	9.0000
(((	chr15:93426497-93426753(+)$1	1	1	4	9.0000
(((	chr9:123638030-123638293(-)$1	1	43	46	9.0000
(..	chr17:8076752-8076957(-)$1	1	37	40	9.0000
(((	chr12:125398883-125399120(-)$1	1	6	9	9.0000
(..	chr17:8076725-8076952(-)$1	1	32	35	9.0000
...	chr11:75111377-75111607(+)$1	1	10	13	9.0000
(.(	chr17:42401880-42402159(-)$1	1	12	15	9.0000
(((	chr16:89627003-89627219(+)$1	1	6	9	9.0000
(((	chr15:93426553-93426923(+)$1	1	2	5	9.0000
)))	chr1:182360379-182360641(-)$1	1	13	16	9.0000
(((	chr1:28832474-28832697(+)$1	1	36	39	9.0000
(((	chr15:93426437-93426697(+)$1	1	61	64	9.0000

#PSSM
G : 0.92	g : 0.07	
G : 0.92	g : 0.07	
C : 0.92	c : 0.07	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_transcript_m3_run1.nuc.txt

#NT
UCA	chr19:34883718-34883930(+)$1	212	194	197	8.9999
uca	chr1:161582455-161582662(+)$1	207	86	89	8.9999
UCA	chr16:601125-601390(+)$1	265	100	103	8.9999
UCA	chr19:49606821-49607075(+)$1	254	157	160	8.9999
UCA	chr11:65190835-65191112(+)$1	277	159	162	8.9999
UCA	chr7:26233101-26233345(-)$1	244	160	163	8.9999
uca	chr19:34879374-34879595(+)$1	221	5	8	8.9999
UCA	chr15:45490776-45490992(-)$1	216	83	86	8.9999
UCA	chr7:26237204-26237463(-)$1	259	29	32	8.9999
UCA	chr8:56986292-56986545(-)$1	253	76	79	8.9999
uca	chr5:53325026-53325302(-)$1	276	227	230	8.9999
UCA	chr11:65190930-65191173(+)$1	243	64	67	8.9999
UCA	chr19:49607697-49608001(+)$1	304	20	23	8.9999
UCA	chr16:84111643-84111901(-)$1	258	26	29	8.9999
UCA	chr9:133617852-133618149(+)$1	297	34	37	8.9999
UCA	chr19:34877893-34878203(+)$1	310	53	56	8.9999
UCA	chr11:65272011-65272216(+)$1	205	71	74	8.9999
UCA	chr22:50694468-50694722(-)$1	254	1	4	8.9999
UCA	chr8:23412254-23412497(+)$1	243	117	120	8.9999
uca	chr16:88995736-88996013(-)$1	277	97	100	8.9999
uca	chr21:11085335-11085625(-)$1	290	251	254	8.9999
uca	chr2:132041643-132041894(+)$1	251	8	11	8.9999
uca	chr1:161582472-161582686(+)$1	214	69	72	8.9999
uCA	chr22:19896850-19897211(-)$1	361	198	201	8.9999
UCA	chr19:34876837-34877051(+)$1	214	4	7	8.9999
uca	chr10:119125922-119126206(-)$1	284	195	198	8.9999
UCA	chr17:17120121-17120362(-)$1	241	39	42	8.9999
UCA	chr2:152324682-152324932(+)$1	250	43	46	8.9999
UCA	chr19:34882674-34882888(+)$1	214	61	64	8.9999
UCA	chr16:600840-601081(+)$1	241	73	76	8.9999
UCA	chr11:65191264-65191469(+)$1	205	143	146	8.9999
UCA	chr3:48642216-48642473(-)$1	257	30	33	8.9999
UCA	chr19:34883333-34883572(+)$1	239	49	52	8.9999
uca	chr10:72505502-72505728(+)$1	226	40	43	8.9999
UCA	chr19:805384-805661(+)$1	277	93	96	8.9999
UCA	chr1:226066420-226066707(-)$1	287	16	19	8.9999
UCA	chr10:11921143-11921422(-)$1	279	1	4	8.9999
UCA	chr8:23412155-23412438(+)$1	283	216	219	8.9999
UCA	chr19:34874315-34874545(+)$1	230	67	70	8.9999
UCA	chr15:91446141-91446421(+)$1	280	153	156	8.9999
UCA	chr2:97559877-97560184(-)$1	307	100	103	8.9999
UCA	chr11:65193769-65194006(+)$1	237	43	46	8.9999
UCA	chr19:34881204-34881445(+)$1	241	52	55	8.9999
UCA	chr18:43669718-43670001(-)$1	283	2	5	8.9999
UCA	chr19:34881015-34881244(+)$1	229	51	54	8.9999
UCA	chr19:49605887-49606142(+)$1	255	72	75	8.9999
UCA	chr17:56082236-56082587(-)$1	351	15	18	8.9999
UCA	chr17:17120226-17120434(-)$1	208	31	34	8.9999
UCA	chr16:31196228-31196553(+)$1	325	10	13	8.9999
uca	chr22:49974243-49974470(-)$1	227	95	98	8.9999
UCA	chr11:65191100-65191352(+)$1	252	55	58	8.9999
UCA	chr3:13419048-13419303(-)$1	255	217	220	8.9999
UCA	chr11:290680-290953(+)$1	273	17	20	8.9999
UCA	chr11:65191231-65191452(+)$1	221	176	179	8.9999
UCA	chr7:26237347-26237593(-)$1	246	18	21	8.9999
UCA	chr19:34882100-34882324(+)$1	224	32	35	8.9999
UCA	chrX:13347615-13347831(+)$1	216	47	50	8.9999
UCA	chr1:53750095-53750378(-)$1	283	37	40	8.9999
uca	chr1:227147889-227148190(+)$1	301	140	143	8.9999
UCA	chr17:61909382-61909669(-)$1	287	265	268	8.9999
UCA	chr6:26027329-26027553(-)$1	224	59	62	8.9999
uca	chr10:72505528-72505779(+)$1	251	14	17	8.9999
UCA	chr15:66639441-66639650(-)$1	209	26	29	8.9999
UCA	chr19:34882858-34883072(+)$1	214	25	28	8.9999
UCA	chr19:34873969-34874203(+)$1	234	79	82	8.9999
UCA	chr5:53340810-53341095(-)$1	285	171	174	8.9999
UCA	chr7:26230680-26230930(-)$1	250	23	26	8.9999
UCA	chr17:46051772-46052129(+)$1	357	91	94	8.9999
UCA	chr4:1342730-1343009(+)$1	279	204	207	8.9999
UCA	chrX:152957477-152957728(+)$1	251	68	71	8.9999
uca	chr2:102338521-102338772(+)$1	251	40	43	8.9999
UCA	chr11:65201841-65202095(+)$1	254	0	3	8.9999
UCA	chr19:34882664-34882872(+)$1	208	71	74	8.9999
UCA	chr5:179921604-179921863(+)$1	259	107	110	8.9999
UCA	chr2:17934125-17934390(-)$1	265	15	18	8.9999
UCA	chr18:43671546-43671779(-)$1	233	92	95	8.9999
uca	chr10:11921370-11921627(-)$1	257	105	108	8.9999
UCA	chr21:45739476-45739747(+)$1	271	179	182	8.9999
uca	chr19:34879339-34879565(+)$1	226	7	10	8.9999
UCA	chr19:34882722-34882938(+)$1	216	13	16	8.9999
UCA	chr3:186502524-186502739(+)$1	215	77	80	8.9999
UCA	chr19:34878694-34878909(+)$1	215	0	3	8.9999
UCA	chr19:34882929-34883167(+)$1	238	3	6	8.9999
UCA	chr3:185531500-185531740(-)$1	240	27	30	8.9999
UCA	chr8:110346528-110346753(+)$1	225	117	120	8.9999
UCA	chr11:65191209-65191426(+)$1	217	3	6	8.9999
UCA	chr3:186502587-186502844(+)$1	257	14	17	8.9999
UCA	chr19:34882655-34882864(+)$1	209	80	83	8.9999
UCA	chr1:173836996-173837221(-)$1	225	49	52	8.9999
UCA	chr9:139564819-139565080(+)$1	261	151	154	8.9999
UCA	chr6:26189129-26189339(-)$1	210	30	33	8.9999
UCA	chr11:65272000-65272211(+)$1	211	82	85	8.9999
uca	chr15:45490664-45490874(-)$1	210	63	66	8.9999

#otherMatches

#Struct PSSM
GGG	chr11:95528065-95528343(+)$1	278	26	29	8.9999
GGG	chr19:34883718-34883930(+)$1	212	194	197	8.9999
ppp	chr1:161582455-161582662(+)$1	207	86	89	8.9999
ccc	chr16:601125-601390(+)$1	265	100	103	8.9999
"""	chr19:49606821-49607075(+)$1	254	157	160	8.9999
ee[	chr11:65190835-65191112(+)$1	277	159	162	8.9999
fff	chr7:26233101-26233345(-)$1	244	160	163	8.9999
eee	chr19:34879374-34879595(+)$1	221	5	8	8.9999
ccc	chr15:45490776-45490992(-)$1	216	83	86	8.9999
:::	chr7:26237204-26237463(-)$1	259	29	32	8.9999
bb]	chr8:56986292-56986545(-)$1	253	76	79	8.9999
ddd	chr5:53325026-53325302(-)$1	276	227	230	8.9999
C:e	chr11:65190930-65191173(+)$1	243	64	67	8.9999
hh[	chr19:49607697-49608001(+)$1	304	20	23	8.9999
[cc	chr16:84111643-84111901(-)$1	258	26	29	8.9999
:::	chr9:133617852-133618149(+)$1	297	34	37	8.9999
=ff	chr19:34877893-34878203(+)$1	310	53	56	8.9999
[cc	chr11:65272011-65272216(+)$1	205	71	74	8.9999
:::	chr22:50694468-50694722(-)$1	254	1	4	8.9999
=cc	chr8:23412254-23412497(+)$1	243	117	120	8.9999
]cc	chr16:88995736-88996013(-)$1	277	97	100	8.9999
hhh	chr21:11085335-11085625(-)$1	290	251	254	8.9999
C{F	chr2:132041643-132041894(+)$1	251	8	11	8.9999
ppp	chr1:161582472-161582686(+)$1	214	69	72	8.9999
ygg	chr22:19896850-19897211(-)$1	361	198	201	8.9999
:::	chr19:34876837-34877051(+)$1	214	4	7	8.9999
fff	chr10:119125922-119126206(-)$1	284	195	198	8.9999
ggp	chr17:17120121-17120362(-)$1	241	39	42	8.9999
ff>	chr2:152324682-152324932(+)$1	250	43	46	8.9999
ddd	chr19:34882674-34882888(+)$1	214	61	64	8.9999
"cc	chr16:600840-601081(+)$1	241	73	76	8.9999
dd[	chr11:65191264-65191469(+)$1	205	143	146	8.9999
!cc	chr3:48642216-48642473(-)$1	257	30	33	8.9999
ddd	chr19:34883333-34883572(+)$1	239	49	52	8.9999
ccc	chr10:72505502-72505728(+)$1	226	40	43	8.9999
$$$	chr19:805384-805661(+)$1	277	93	96	8.9999
ppp	chr1:226066420-226066707(-)$1	287	16	19	8.9999
ggg	chr10:11921143-11921422(-)$1	279	1	4	8.9999
:::	chr8:23412155-23412438(+)$1	283	216	219	8.9999
fff	chr19:34874315-34874545(+)$1	230	67	70	8.9999
ddd	chr15:91446141-91446421(+)$1	280	153	156	8.9999
bb:	chr2:97559877-97560184(-)$1	307	100	103	8.9999
b""	chr11:65193769-65194006(+)$1	237	43	46	8.9999
"""	chr19:34881204-34881445(+)$1	241	52	55	8.9999
DDD	chr18:43669718-43670001(-)$1	283	2	5	8.9999
cc[	chr19:34881015-34881244(+)$1	229	51	54	8.9999
ee#	chr19:49605887-49606142(+)$1	255	72	75	8.9999
===	chr17:56082236-56082587(-)$1	351	15	18	8.9999
cc]	chr17:17120226-17120434(-)$1	208	31	34	8.9999
EE{	chr16:31196228-31196553(+)$1	325	10	13	8.9999
cc2	chr22:49974243-49974470(-)$1	227	95	98	8.9999
BB{	chr11:65191100-65191352(+)$1	252	55	58	8.9999
DDY	chr3:13419048-13419303(-)$1	255	217	220	8.9999
BB:	chr11:290680-290953(+)$1	273	17	20	8.9999
:::	chr11:65191231-65191452(+)$1	221	176	179	8.9999
eee	chr7:26237347-26237593(-)$1	246	18	21	8.9999
:::	chr19:34882100-34882324(+)$1	224	32	35	8.9999
iii	chrX:13347615-13347831(+)$1	216	47	50	8.9999
:::	chr1:53750095-53750378(-)$1	283	37	40	8.9999
ggg	chr1:227147889-227148190(+)$1	301	140	143	8.9999
FFF	chr17:61909382-61909669(-)$1	287	265	268	8.9999
=!!	chr6:26027329-26027553(-)$1	224	59	62	8.9999
ccc	chr10:72505528-72505779(+)$1	251	14	17	8.9999
dd%	chr15:66639441-66639650(-)$1	209	26	29	8.9999
ddd	chr19:34882858-34883072(+)$1	214	25	28	8.9999
GGG	chr19:34873969-34874203(+)$1	234	79	82	8.9999
i[c	chr5:53340810-53341095(-)$1	285	171	174	8.9999
iii	chr7:26230680-26230930(-)$1	250	23	26	8.9999
ddd	chr17:46051772-46052129(+)$1	357	91	94	8.9999
6bb	chr4:1342730-1343009(+)$1	279	204	207	8.9999
ooo	chrX:152957477-152957728(+)$1	251	68	71	8.9999
eeE	chr2:102338521-102338772(+)$1	251	40	43	8.9999
::g	chr11:65201841-65202095(+)$1	254	0	3	8.9999
ddd	chr19:34882664-34882872(+)$1	208	71	74	8.9999
:::	chr5:179921604-179921863(+)$1	259	107	110	8.9999
GGG	chr2:17934125-17934390(-)$1	265	15	18	8.9999
cc[	chr18:43671546-43671779(-)$1	233	92	95	8.9999
===	chr10:11921370-11921627(-)$1	257	105	108	8.9999
ooo	chr21:45739476-45739747(+)$1	271	179	182	8.9999
BEE	chr19:34879339-34879565(+)$1	226	7	10	8.9999
ddd	chr19:34882722-34882938(+)$1	216	13	16	8.9999
bb[	chr3:186502524-186502739(+)$1	215	77	80	8.9999
:::	chr19:34878694-34878909(+)$1	215	0	3	8.9999
:::	chr19:34882929-34883167(+)$1	238	3	6	8.9999
ee[	chr3:185531500-185531740(-)$1	240	27	30	8.9999
bb]	chr8:110346528-110346753(+)$1	225	117	120	8.9999
:::	chr11:65191209-65191426(+)$1	217	3	6	8.9999
EE:	chr3:186502587-186502844(+)$1	257	14	17	8.9999
ddd	chr19:34882655-34882864(+)$1	209	80	83	8.9999
i!!	chr1:173836996-173837221(-)$1	225	49	52	8.9999
g22	chr9:139564819-139565080(+)$1	261	151	154	8.9999
EE:	chr6:26189129-26189339(-)$1	210	30	33	8.9999
[cc	chr11:65272000-65272211(+)$1	211	82	85	8.9999
FFF	chr15:45490664-45490874(-)$1	210	63	66	8.9999

#DB
(((	chr11:95528065-95528343(+)$1	1	26	29	8.9999
)))	chr19:34883718-34883930(+)$1	1	194	197	8.9999
...	chr1:161582455-161582662(+)$1	1	86	89	8.9999
)))	chr16:601125-601390(+)$1	1	100	103	8.9999
...	chr19:49606821-49607075(+)$1	1	157	160	8.9999
((.	chr11:65190835-65191112(+)$1	1	159	162	8.9999
)))	chr7:26233101-26233345(-)$1	1	160	163	8.9999
(((	chr19:34879374-34879595(+)$1	1	5	8	8.9999
)))	chr15:45490776-45490992(-)$1	1	83	86	8.9999
...	chr7:26237204-26237463(-)$1	1	29	32	8.9999
)).	chr8:56986292-56986545(-)$1	1	76	79	8.9999
)))	chr5:53325026-53325302(-)$1	1	227	230	8.9999
(.(	chr11:65190930-65191173(+)$1	1	64	67	8.9999
((.	chr19:49607697-49608001(+)$1	1	20	23	8.9999
.((	chr16:84111643-84111901(-)$1	1	26	29	8.9999
...	chr9:133617852-133618149(+)$1	1	34	37	8.9999
(((	chr19:34877893-34878203(+)$1	1	53	56	8.9999
.((	chr11:65272011-65272216(+)$1	1	71	74	8.9999
...	chr22:50694468-50694722(-)$1	1	1	4	8.9999
)((	chr8:23412254-23412497(+)$1	1	117	120	8.9999
.))	chr16:88995736-88996013(-)$1	1	97	100	8.9999
)))	chr21:11085335-11085625(-)$1	1	251	254	8.9999
(.(	chr2:132041643-132041894(+)$1	1	8	11	8.9999
...	chr1:161582472-161582686(+)$1	1	69	72	8.9999
.))	chr22:19896850-19897211(-)$1	1	198	201	8.9999
...	chr19:34876837-34877051(+)$1	1	4	7	8.9999
)))	chr10:119125922-119126206(-)$1	1	195	198	8.9999
((.	chr17:17120121-17120362(-)$1	1	39	42	8.9999
)).	chr2:152324682-152324932(+)$1	1	43	46	8.9999
)))	chr19:34882674-34882888(+)$1	1	61	64	8.9999
.((	chr16:600840-601081(+)$1	1	73	76	8.9999
((.	chr11:65191264-65191469(+)$1	1	143	146	8.9999
.((	chr3:48642216-48642473(-)$1	1	30	33	8.9999
(((	chr19:34883333-34883572(+)$1	1	49	52	8.9999
(((	chr10:72505502-72505728(+)$1	1	40	43	8.9999
...	chr19:805384-805661(+)$1	1	93	96	8.9999
...	chr1:226066420-226066707(-)$1	1	16	19	8.9999
(((	chr10:11921143-11921422(-)$1	1	1	4	8.9999
...	chr8:23412155-23412438(+)$1	1	216	219	8.9999
(((	chr19:34874315-34874545(+)$1	1	67	70	8.9999
(((	chr15:91446141-91446421(+)$1	1	153	156	8.9999
)).	chr2:97559877-97560184(-)$1	1	100	103	8.9999
(..	chr11:65193769-65194006(+)$1	1	43	46	8.9999
...	chr19:34881204-34881445(+)$1	1	52	55	8.9999
(((	chr18:43669718-43670001(-)$1	1	2	5	8.9999
((.	chr19:34881015-34881244(+)$1	1	51	54	8.9999
((.	chr19:49605887-49606142(+)$1	1	72	75	8.9999
(((	chr17:56082236-56082587(-)$1	1	15	18	8.9999
)).	chr17:17120226-17120434(-)$1	1	31	34	8.9999
((.	chr16:31196228-31196553(+)$1	1	10	13	8.9999
)).	chr22:49974243-49974470(-)$1	1	95	98	8.9999
((.	chr11:65191100-65191352(+)$1	1	55	58	8.9999
)).	chr3:13419048-13419303(-)$1	1	217	220	8.9999
((.	chr11:290680-290953(+)$1	1	17	20	8.9999
...	chr11:65191231-65191452(+)$1	1	176	179	8.9999
(((	chr7:26237347-26237593(-)$1	1	18	21	8.9999
...	chr19:34882100-34882324(+)$1	1	32	35	8.9999
(((	chrX:13347615-13347831(+)$1	1	47	50	8.9999
...	chr1:53750095-53750378(-)$1	1	37	40	8.9999
)))	chr1:227147889-227148190(+)$1	1	140	143	8.9999
)))	chr17:61909382-61909669(-)$1	1	265	268	8.9999
(..	chr6:26027329-26027553(-)$1	1	59	62	8.9999
(((	chr10:72505528-72505779(+)$1	1	14	17	8.9999
((.	chr15:66639441-66639650(-)$1	1	26	29	8.9999
(((	chr19:34882858-34883072(+)$1	1	25	28	8.9999
)))	chr19:34873969-34874203(+)$1	1	79	82	8.9999
(.(	chr5:53340810-53341095(-)$1	1	171	174	8.9999
)))	chr7:26230680-26230930(-)$1	1	23	26	8.9999
(((	chr17:46051772-46052129(+)$1	1	91	94	8.9999
.))	chr4:1342730-1343009(+)$1	1	204	207	8.9999
...	chrX:152957477-152957728(+)$1	1	68	71	8.9999
))(	chr2:102338521-102338772(+)$1	1	40	43	8.9999
..(	chr11:65201841-65202095(+)$1	1	0	3	8.9999
)))	chr19:34882664-34882872(+)$1	1	71	74	8.9999
...	chr5:179921604-179921863(+)$1	1	107	110	8.9999
(((	chr2:17934125-17934390(-)$1	1	15	18	8.9999
((.	chr18:43671546-43671779(-)$1	1	92	95	8.9999
(((	chr10:11921370-11921627(-)$1	1	105	108	8.9999
...	chr21:45739476-45739747(+)$1	1	179	182	8.9999
(((	chr19:34879339-34879565(+)$1	1	7	10	8.9999
(((	chr19:34882722-34882938(+)$1	1	13	16	8.9999
((.	chr3:186502524-186502739(+)$1	1	77	80	8.9999
...	chr19:34878694-34878909(+)$1	1	0	3	8.9999
...	chr19:34882929-34883167(+)$1	1	3	6	8.9999
((.	chr3:185531500-185531740(-)$1	1	27	30	8.9999
)).	chr8:110346528-110346753(+)$1	1	117	120	8.9999
...	chr11:65191209-65191426(+)$1	1	3	6	8.9999
((.	chr3:186502587-186502844(+)$1	1	14	17	8.9999
)))	chr19:34882655-34882864(+)$1	1	80	83	8.9999
(..	chr1:173836996-173837221(-)$1	1	49	52	8.9999
)..	chr9:139564819-139565080(+)$1	1	151	154	8.9999
((.	chr6:26189129-26189339(-)$1	1	30	33	8.9999
.((	chr11:65272000-65272211(+)$1	1	82	85	8.9999
)))	chr15:45490664-45490874(-)$1	1	63	66	8.9999

#PSSM
U : 0.80	u : 0.19	
C : 0.81	c : 0.18	
A : 0.81	a : 0.18	

#score	845.9999999999998
#seq	94
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_transcript_m3_run2.nuc.txt

#NT
CCAUGGAUGACAGAAGGAGGGGUGGUGGGGGAGGUGCCGUGAUGGCGGAAGGAGGGGUGGUGCGGGAGGUACCGUGGAUGGCAAAGGAGGGGUGGUGCGGGAGGUGCCGUGGAUGGCGGAAGGAGGGGUGGUGCGGGAGGUGCCGUGGAUGGCGGAAGGAGGGUUGGUGCGGGAGGUGCUGUGGAUGGCGGAaguaggauggguaguguugccagugcauuugauguuagccuucaugaauuuagagagacccaucagcacuuugggguucugcugucuguguuuagcuc	chr22:19189742-19190090(-)$1	348	24	314	452.5000

#otherMatches

#Struct PSSM
::::::::::::::::::a[bb[bb[bb[a####bb[a"""a[bb[bb[bbpppppppbb]bb]bb]a333a]bb333a]bb]bb]bb]a::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::	chr15:30241697-30241990(-)$1	293	1	291	452.5000
{HHHHHHHH{EEEEELLLFFFFFF{CCCCCC:::::ddddmmmmdddd::::::::::eeeeennnnneeeee:bb[bb[bbrrrrrrrrrbb]bb]bb:::::ffffff!!ffffff%%%%%%a[ammmma]a666666ffffff22ffffff::::hhhhhhhh!!ccc!!ffffff%%%%%%ffffff[a[bbpppppppbb]a]ffffff22ffffff22ccchhhhhhhh:::::::::::::::CCC}CCC}FFFFFF~~~~EEEEE}HHHHHHHHYYBB}DDD	chr22:19189742-19190090(-)$1	348	24	314	452.5000

#DB
..................(.((.((.((.(....((.(...(.((.((.((.......)).)).)).)...).))...).)).)).)).)........................................................................................................................................................................................................	chr15:30241697-30241990(-)$1	1	1	291	452.5000
.((((((((.(((((...((((((.((((((.....((((....))))..........(((((.....))))).((.((.((.........)).)).)).....((((((..((((((......(.(....).)......))))))..))))))....((((((((..(((..((((((......((((((.(.((.......)).).))))))..))))))..)))))))))))...............))).))).))))))....))))).))))))))..)).)))	chr22:19189742-19190090(-)$1	1	24	314	452.5000

#PSSM
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
u : 0.50	A : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	C : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	U : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
a : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	U : 0.50	
u : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	C : 0.50	
a : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	A : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	A : 0.50	
u : 0.50	C : 0.50	
g : 0.50	C : 0.50	
a : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	A : 0.50	
u : 0.50	A : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
g : 0.50	G : 0.50	
a : 0.50	G : 0.50	
a : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	C : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	A : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	A : 0.50	
u : 0.50	a : 0.50	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
g : 1.00	
a : 0.50	g : 0.50	
g : 0.50	a : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 1.00	
g : 1.00	
a : 0.50	u : 0.50	
g : 0.50	a : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
g : 0.50	u : 0.50	
u : 1.00	
g : 1.00	
g : 0.50	c : 0.50	
u : 0.50	c : 0.50	
u : 0.50	a : 0.50	
g : 1.00	
u : 1.00	
g : 1.00	
g : 0.50	c : 0.50	
a : 1.00	
a : 0.50	u : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
g : 1.00	
g : 0.50	a : 0.50	
a : 0.50	u : 0.50	
g : 1.00	
g : 0.50	u : 0.50	
u : 1.00	
g : 0.50	a : 0.50	
g : 1.00	
u : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
u : 0.50	c : 0.50	
g : 0.50	a : 0.50	
u : 1.00	
g : 1.00	
g : 0.50	a : 0.50	
a : 1.00	
g : 0.50	u : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
g : 0.50	a : 0.50	
g : 1.00	
u : 0.50	a : 0.50	
g : 1.00	
g : 0.50	a : 0.50	
u : 0.50	g : 0.50	
g : 0.50	a : 0.50	
g : 0.50	c : 0.50	
u : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	a : 0.50	
a : 0.50	u : 0.50	
g : 0.50	c : 0.50	
g : 0.50	a : 0.50	
u : 0.50	g : 0.50	
g : 0.50	c : 0.50	
g : 0.50	a : 0.50	
u : 0.50	c : 0.50	
g : 0.50	u : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
g : 1.00	
g : 1.00	
u : 0.50	g : 0.50	
g : 1.00	
g : 0.50	u : 0.50	
a : 0.50	u : 0.50	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	c : 0.50	
g : 0.50	u : 0.50	
a : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 0.50	c : 0.50	
u : 1.00	
g : 1.00	
g : 0.50	u : 0.50	
u : 0.50	g : 0.50	
g : 0.50	u : 0.50	
g : 0.50	u : 0.50	
u : 1.00	
u : 0.50	a : 0.50	
g : 1.00	
u : 0.50	c : 0.50	
g : 0.50	u : 0.50	
g : 0.50	c : 0.50	

#score	905.0
#seq	2
#width	290
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_CDS_m2_run1.nuc.txt

#NT
UCCUGCCC	chr1:150939175-150939398(-)$1	223	154	162	15.5789
CCCUUCCC	chr3:33907867-33908132(+)$1	265	105	113	16.3684
CCCUCCCC	chr12:7044955-7045222(+)$1	267	110	118	16.1929
CCAUGCCC	chr5:139946671-139946895(+)$1	224	178	186	15.4035
CCCUGCCC	chr11:314994-315241(+)$1	247	188	196	19.7017
CCUUGCCC	chr6:34213233-34213450(+)$1	217	119	127	15.3157
CCCUACCC	chr3:48510781-48511024(-)$1	243	189	197	16.4561
CCCUGCCU	chr19:42734771-42735065(-)$1	294	30	38	15.4912
CCCUGCUC	chr9:115095652-115095865(-)$1	213	78	86	15.2280
CCCUGUCC	chr9:115336916-115337295(+)$1	379	123	131	14.8771
CCCUGCCC	chrX:47070399-47070633(+)$1	234	14	22	19.7017
CACUGCCC	chr9:134073764-134074032(+)$1	268	111	119	15.6666
UCCUGCCC	chr6:44122511-44122757(+)$1	246	136	144	15.5789
CACUGCCC	chr3:100467086-100467348(+)$1	262	72	80	15.6666
CGCUGCCC	chr21:36164661-36165008(-)$1	347	146	154	15.4035
CCCUGCUC	chr19:12989400-12989737(-)$1	337	209	217	15.2280
CACUGCCC	chr3:50644889-50645156(-)$1	267	66	74	15.6666
CCCUGCCC	chr12:57919342-57919614(+)$1	272	220	228	19.7017
CCAUGCCC	chr1:151261601-151261849(+)$1	248	95	103	15.4035
CCCUGCCC	chr16:23695186-23695459(+)$1	273	117	125	19.7017
CCCUGCCU	chr5:139908397-139908658(+)$1	261	87	95	15.4912
CCCUGCGC	chr11:14541741-14541985(-)$1	244	19	27	15.1403
CCCUUCCC	chr11:45986849-45987134(-)$1	285	93	101	16.3684
CCCUGCCU	chr12:49434777-49435035(-)$1	258	22	30	15.4912
CCCAGCCC	chr22:41543824-41544050(+)$1	226	46	54	15.7543
CCCUACCC	chr3:47651454-47651702(-)$1	248	95	103	16.4561
CCCUGCCA	chr1:161771783-161772062(+)$1	279	5	13	15.2280
CCAUGCCC	chr3:47912256-47912576(-)$1	320	92	100	15.4035
UCCUGCCC	chr19:35655012-35655248(+)$1	236	13	21	15.5789
CCCUACCC	chr3:47632093-47632359(-)$1	266	129	137	16.4561
CCCUGCCC	chrX:47087928-47088143(+)$1	215	139	147	19.7017
UCCUGCCC	chr4:38690368-38690625(+)$1	257	201	209	15.5789
CCCUCCCC	chr20:49509813-49510073(-)$1	260	124	132	16.1929
CCCUGCCC	chr1:113243931-113244207(-)$1	276	243	251	19.7017
CCCUACCC	chr12:57118161-57118368(-)$1	207	141	149	16.4561
CCCGGCCC	chr17:26646227-26646486(+)$1	259	184	192	15.4912
CCCAGCCC	chr11:3723816-3724075(-)$1	259	111	119	15.7543
GCCUGCCC	chr20:35862381-35862591(+)$1	210	164	172	15.3157
CACUGCCC	chr22:37964035-37964332(+)$1	297	58	66	15.6666
CCCUCCCC	chr19:12951722-12951978(+)$1	256	164	172	16.1929
ACCUGCCC	chr12:7045263-7045515(+)$1	252	78	86	15.3157
CCUUGCCC	chr3:40351295-40351554(+)$1	259	196	204	15.3157
CCCGGCCC	chr19:54377045-54377318(+)$1	273	216	224	15.4912
CCCAGCCC	chr10:81056225-81056494(+)$1	269	64	72	15.7543
cccuuccc	chr6:34212715-34212919(+)$1	204	29	37	16.3684
CCCUGCCC	chr1:155217911-155218156(-)$1	245	173	181	19.7017
CCCUGCCU	chr16:68225157-68225405(+)$1	248	38	46	15.4912
CCCUUCCC	chrX:153051196-153051506(-)$1	310	218	226	16.3684
CUCUGCCC	chr17:45993807-45994091(+)$1	284	267	275	15.4912
CCCAGCCC	chrX:153219461-153219719(-)$1	258	238	246	15.7543
CUCUGCCC	chr12:57032979-57033191(-)$1	212	10	18	15.4912
CCCUACCC	chr3:169866845-169867122(-)$1	277	200	208	16.4561
CCCUUCCC	chrX:70338394-70338728(+)$1	334	147	155	16.3684
CCCAGCCC	chr16:28834506-28834740(+)$1	234	13	21	15.7543
CCCUGCCC	chr1:33236885-33237148(+)$1	263	216	224	19.7017
CCCUACCC	chr16:28847298-28847545(+)$1	247	117	125	16.4561

#otherMatches

#Struct PSSM
lllccc::	chr6:34212936-34213158(+)$1	222	25	33	15.1403
EEEEEAEE	chr1:150939175-150939398(-)$1	223	154	162	15.5789
UUUGGGGG	chr3:33907867-33908132(+)$1	265	105	113	16.3684
JJJJJJJJ	chr12:7044955-7045222(+)$1	267	110	118	16.1929
="""bboo	chr5:139946671-139946895(+)$1	224	178	186	15.4035
4444eeee	chr11:314994-315241(+)$1	247	188	196	19.7017
[dddd[dd	chr6:34213233-34213450(+)$1	217	119	127	15.3157
EEEE@@@@	chr3:48510781-48511024(-)$1	243	189	197	16.4561
GGG{CCC:	chr19:42734771-42735065(-)$1	294	30	38	15.4912
cc::eeee	chr9:115095652-115095865(-)$1	213	78	86	15.2280
g"""ccc!	chr9:115336916-115337295(+)$1	379	123	131	14.8771
{BB:::::	chrX:47070399-47070633(+)$1	234	14	22	19.7017
:::ccc$$	chr9:134073764-134074032(+)$1	268	111	119	15.6666
qqqqcccc	chr6:44122511-44122757(+)$1	246	136	144	15.5789
tttccc88	chr3:100467086-100467348(+)$1	262	72	80	15.6666
cc[ccc^^	chr21:36164661-36165008(-)$1	347	146	154	15.4035
eeeeeccc	chr19:12989400-12989737(-)$1	337	209	217	15.2280
:::DDDD:	chr3:50644889-50645156(-)$1	267	66	74	15.6666
:::cccoo	chr12:57919342-57919614(+)$1	272	220	228	19.7017
EEE{DDDD	chr1:151261601-151261849(+)$1	248	95	103	15.4035
rrrrccc:	chr16:23695186-23695459(+)$1	273	117	125	19.7017
$$$eeeee	chr5:139908397-139908658(+)$1	261	87	95	15.4912
oooodddd	chr11:14541741-14541985(-)$1	244	19	27	15.1403
^^^^^^^^	chr11:45986849-45987134(-)$1	285	93	101	16.3684
mmmmccc2	chr12:49434777-49435035(-)$1	258	22	30	15.4912
clllccc:	chr22:41543824-41544050(+)$1	226	46	54	15.7543
d!!dddd"	chr3:47651454-47651702(-)$1	248	95	103	16.4561
:::JJJJJ	chr1:161771783-161772062(+)$1	279	5	13	15.2280
::::cccn	chr3:47912256-47912576(-)$1	320	92	100	15.4035
qqqqccc:	chr19:35655012-35655248(+)$1	236	13	21	15.5789
::::::::	chr3:47632093-47632359(-)$1	266	129	137	16.4561
^^^^^^^^	chrX:47087928-47088143(+)$1	215	139	147	19.7017
f[ddddhh	chr4:38690368-38690625(+)$1	257	201	209	15.5789
ccccnnnn	chr20:49509813-49510073(-)$1	260	124	132	16.1929
dd22ccc3	chr1:113243931-113244207(-)$1	276	243	251	19.7017
mffffff:	chr12:57118161-57118368(-)$1	207	141	149	16.4561
i]dddd::	chr17:26646227-26646486(+)$1	259	184	192	15.4912
::dddd!!	chr11:3723816-3724075(-)$1	259	111	119	15.7543
ca]ccc44	chr20:35862381-35862591(+)$1	210	164	172	15.3157
WWWWWWWW	chr22:37964035-37964332(+)$1	297	58	66	15.6666
llccc]cc	chr19:12951722-12951978(+)$1	256	164	172	16.1929
FLLLCCC:	chr12:7045263-7045515(+)$1	252	78	86	15.3157
ttttbb]e	chr3:40351295-40351554(+)$1	259	196	204	15.3157
flllffff	chr19:54377045-54377318(+)$1	273	216	224	15.4912
NNNNEEEE	chr10:81056225-81056494(+)$1	269	64	72	15.7543
xxxxxxxx	chr6:34212715-34212919(+)$1	204	29	37	16.3684
oooobb:E	chr1:155217911-155218156(-)$1	245	173	181	19.7017
FFFFF:::	chr16:68225157-68225405(+)$1	248	38	46	15.4912
ppppccc6	chrX:153051196-153051506(-)$1	310	218	226	16.3684
_DDDD:::	chr17:45993807-45994091(+)$1	284	267	275	15.4912
f:eeeeen	chrX:153219461-153219719(-)$1	258	238	246	15.7543
::::::::	chr12:57032979-57033191(-)$1	212	10	18	15.4912
qqbb]eee	chr3:169866845-169867122(-)$1	277	200	208	16.4561
::::eeee	chrX:70338394-70338728(+)$1	334	147	155	16.3684
fqqqqqqq	chr16:28834506-28834740(+)$1	234	13	21	15.7543
:eeeeebb	chr1:33236885-33237148(+)$1	263	216	224	19.7017
EEEEE::C	chr16:28847298-28847545(+)$1	247	117	125	16.4561

#DB
...)))..	chr6:34212936-34213158(+)$1	1	25	33	15.1403
))))))))	chr1:150939175-150939398(-)$1	1	154	162	15.5789
...(((((	chr3:33907867-33908132(+)$1	1	105	113	16.3684
((((((((	chr12:7044955-7045222(+)$1	1	110	118	16.1929
(...((..	chr5:139946671-139946895(+)$1	1	178	186	15.4035
....))))	chr11:314994-315241(+)$1	1	188	196	19.7017
.((((.((	chr6:34213233-34213450(+)$1	1	119	127	15.3157
))))....	chr3:48510781-48511024(-)$1	1	189	197	16.4561
(((.(((.	chr19:42734771-42735065(-)$1	1	30	38	15.4912
))..((((	chr9:115095652-115095865(-)$1	1	78	86	15.2280
(...(((.	chr9:115336916-115337295(+)$1	1	123	131	14.8771
.((.....	chrX:47070399-47070633(+)$1	1	14	22	19.7017
...(((..	chr9:134073764-134074032(+)$1	1	111	119	15.6666
....))))	chr6:44122511-44122757(+)$1	1	136	144	15.5789
...)))..	chr3:100467086-100467348(+)$1	1	72	80	15.6666
((.(((..	chr21:36164661-36165008(-)$1	1	146	154	15.4035
((((((((	chr19:12989400-12989737(-)$1	1	209	217	15.2280
...((((.	chr3:50644889-50645156(-)$1	1	66	74	15.6666
...(((..	chr12:57919342-57919614(+)$1	1	220	228	19.7017
(((.((((	chr1:151261601-151261849(+)$1	1	95	103	15.4035
....))).	chr16:23695186-23695459(+)$1	1	117	125	19.7017
...(((((	chr5:139908397-139908658(+)$1	1	87	95	15.4912
....))))	chr11:14541741-14541985(-)$1	1	19	27	15.1403
........	chr11:45986849-45987134(-)$1	1	93	101	16.3684
....))).	chr12:49434777-49435035(-)$1	1	22	30	15.4912
(...))).	chr22:41543824-41544050(+)$1	1	46	54	15.7543
(..((((.	chr3:47651454-47651702(-)$1	1	95	103	16.4561
...(((((	chr1:161771783-161772062(+)$1	1	5	13	15.2280
....(((.	chr3:47912256-47912576(-)$1	1	92	100	15.4035
....))).	chr19:35655012-35655248(+)$1	1	13	21	15.5789
........	chr3:47632093-47632359(-)$1	1	129	137	16.4561
........	chrX:47087928-47088143(+)$1	1	139	147	19.7017
(.((((((	chr4:38690368-38690625(+)$1	1	201	209	15.5789
)(((....	chr20:49509813-49510073(-)$1	1	124	132	16.1929
))..))).	chr1:113243931-113244207(-)$1	1	243	251	19.7017
.)))))).	chr12:57118161-57118368(-)$1	1	141	149	16.4561
).))))..	chr17:26646227-26646486(+)$1	1	184	192	15.4912
..((((..	chr11:3723816-3724075(-)$1	1	111	119	15.7543
)).)))..	chr20:35862381-35862591(+)$1	1	164	172	15.3157
........	chr22:37964035-37964332(+)$1	1	58	66	15.6666
..))).))	chr19:12951722-12951978(+)$1	1	164	172	16.1929
(...(((.	chr12:7045263-7045515(+)$1	1	78	86	15.3157
....)).)	chr3:40351295-40351554(+)$1	1	196	204	15.3157
(...))))	chr19:54377045-54377318(+)$1	1	216	224	15.4912
....((((	chr10:81056225-81056494(+)$1	1	64	72	15.7543
........	chr6:34212715-34212919(+)$1	1	29	37	16.3684
....)).)	chr1:155217911-155218156(-)$1	1	173	181	19.7017
(((((...	chr16:68225157-68225405(+)$1	1	38	46	15.4912
....))).	chrX:153051196-153051506(-)$1	1	218	226	16.3684
.))))...	chr17:45993807-45994091(+)$1	1	267	275	15.4912
).(((((.	chrX:153219461-153219719(-)$1	1	238	246	15.7543
........	chr12:57032979-57033191(-)$1	1	10	18	15.4912
..)).)))	chr3:169866845-169867122(-)$1	1	200	208	16.4561
....((((	chrX:70338394-70338728(+)$1	1	147	155	16.3684
(.......	chr16:28834506-28834740(+)$1	1	13	21	15.7543
.(((((((	chr1:33236885-33237148(+)$1	1	216	224	19.7017
(((((..(	chr16:28847298-28847545(+)$1	1	117	125	16.4561

#PSSM
C : 0.87	U : 0.07	G : 0.01	A : 0.01	c : 0.01	
C : 0.85	A : 0.07	U : 0.03	G : 0.01	c : 0.01	
C : 0.89	A : 0.05	U : 0.03	c : 0.01	
U : 0.85	A : 0.08	G : 0.03	u : 0.01	
G : 0.75	A : 0.10	U : 0.07	C : 0.05	u : 0.01	
C : 0.96	U : 0.01	c : 0.01	
C : 0.91	U : 0.03	A : 0.01	G : 0.01	c : 0.01	
C : 0.89	U : 0.07	A : 0.01	c : 0.01	

#score	928.1754385964928
#seq	57
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_UTR_m1_run2.nuc.txt

#NT
UUU	chr10:98718676-98718903(+)$1	227	26	29	8.9999
UUU	chr15:34671331-34671613(-)$1	282	1	4	8.9999
UUU	chr15:34819532-34819781(-)$1	249	29	32	8.9999
UUU	chr15:34671245-34671531(-)$1	286	20	23	8.9999
UUU	chr17:73571113-73571365(+)$1	252	54	57	8.9999
UUU	chr16:11844479-11844746(-)$1	267	32	35	8.9999
UUU	chr1:204523580-204523900(+)$1	320	20	23	8.9999
UUU	chr11:32126690-32126994(+)$1	304	23	26	8.9999
UUU	chr16:2581219-2581479(+)$1	260	110	113	8.9999
UUU	chr10:28909387-28909622(+)$1	235	91	94	8.9999
UUU	chr13:41950967-41951232(+)$1	265	37	40	8.9999
UUU	chr13:33091761-33092022(-)$1	261	92	95	8.9999
UUU	chrX:128580642-128580883(-)$1	241	18	21	8.9999
UUU	chr13:107195866-107196087(-)$1	221	51	54	8.9999
UUU	chr4:99983722-99984031(+)$1	309	16	19	8.9999
UUU	chr1:234742370-234742617(-)$1	247	24	27	8.9999
UUU	chr5:74016886-74017188(+)$1	302	36	39	8.9999
UUU	chr5:6599259-6599509(-)$1	250	73	76	8.9999
UUU	chr16:84087297-84087584(-)$1	287	36	39	8.9999
UUU	chr3:167401731-167402158(-)$1	427	113	116	8.9999
UUU	chr1:46035510-46035746(+)$1	236	0	3	8.9999
UUU	chr2:166846138-166846412(-)$1	274	20	23	8.9999
UUU	chr9:127244355-127244604(-)$1	249	60	63	8.9999
UUU	chr17:25640008-25640261(+)$1	253	97	100	8.9999
UUU	chr4:124324646-124324914(+)$1	268	11	14	8.9999
UUU	chr17:78093022-78093320(+)$1	298	27	30	8.9999
UUU	chr11:64089116-64089367(+)$1	251	135	138	8.9999
UUU	chr12:123998043-123998354(-)$1	311	37	40	8.9999
UUU	chr20:61920825-61921058(+)$1	233	93	96	8.9999
UUU	chr6:134490429-134490718(-)$1	289	4	7	8.9999
UUU	chr2:201717710-201717946(-)$1	236	0	3	8.9999
UUU	chr1:18024058-18024383(+)$1	325	0	3	8.9999
UUU	chr6:159056146-159056405(+)$1	259	0	3	8.9999
UUU	chr2:26360025-26360304(+)$1	279	3	6	8.9999
UUU	chr3:123632507-123632750(-)$1	243	61	64	8.9999
UUU	chr2:27422575-27422818(-)$1	243	26	29	8.9999
UUU	chr14:81939181-81939495(-)$1	314	28	31	8.9999
UUU	chr20:61472272-61472570(+)$1	298	35	38	8.9999
UUU	chr19:46318623-46318889(-)$1	266	147	150	8.9999
UUU	chr12:8071743-8071980(-)$1	237	62	65	8.9999
UUU	chr3:48445184-48445437(-)$1	253	151	154	8.9999
UUU	chr12:6759701-6760043(-)$1	342	3	6	8.9999
UUU	chrX:23804083-23804318(+)$1	235	2	5	8.9999
UUU	chr5:130977487-130977789(-)$1	302	5	8	8.9999
UUU	chr16:74907694-74907973(-)$1	279	40	43	8.9999
UUU	chr20:34291476-34291726(-)$1	250	19	22	8.9999
UUU	chr2:44051040-44051277(-)$1	237	9	12	8.9999
uuu	chr7:73007768-73008019(-)$1	251	69	72	8.9999
UUU	chr5:6599406-6599705(-)$1	299	0	3	8.9999
UUU	chr16:28848288-28848538(+)$1	250	85	88	8.9999
UUU	chr5:176524772-176525056(+)$1	284	138	141	8.9999
UUU	chr22:50637650-50638076(+)$1	426	365	368	8.9999
UUU	chr3:156865508-156865812(-)$1	304	16	19	8.9999
UUU	chr20:3018765-3019029(+)$1	264	49	52	8.9999
UUU	chr6:75962584-75962835(-)$1	251	31	34	8.9999
UUU	chr16:67210118-67210372(-)$1	254	2	5	8.9999
UUU	chr1:11903014-11903267(+)$1	253	10	13	8.9999
UUU	chr6:168372317-168372550(+)$1	233	9	12	8.9999
UUU	chr16:22345159-22345429(+)$1	270	87	90	8.9999
UUU	chr20:57570014-57570252(+)$1	238	48	51	8.9999
UUU	chr19:1009560-1009808(-)$1	248	99	102	8.9999
UUU	chr1:156495362-156495623(-)$1	261	9	12	8.9999
UUU	chr3:145910096-145910407(-)$1	311	28	31	8.9999
UUU	chr2:101612960-101613262(+)$1	302	16	19	8.9999
UUU	chr2:95753113-95753350(-)$1	237	9	12	8.9999
UUU	chr5:177022954-177023208(+)$1	254	99	102	8.9999
UUU	chr2:43449500-43449772(-)$1	272	25	28	8.9999
UUU	chr2:216903085-216903357(-)$1	272	120	123	8.9999
UUU	chrX:16862789-16863037(-)$1	248	16	19	8.9999
UUU	chr21:46189593-46189875(-)$1	282	58	61	8.9999
uuu	chr17:41009940-41010181(+)$1	241	69	72	8.9999
UUU	chr3:48555104-48555363(-)$1	259	114	117	8.9999
UUU	chr2:192289686-192289977(+)$1	291	19	22	8.9999
UUU	chr20:45837960-45838209(-)$1	249	9	12	8.9999
UUU	chr17:3617835-3618123(-)$1	288	43	46	8.9999
uuu	chr1:900616-900864(+)$1	248	67	70	8.9999
uuu	chr16:16243438-16243699(-)$1	261	79	82	8.9999
UUU	chr20:45838009-45838242(-)$1	233	1	4	8.9999
UUU	chr20:60884038-60884308(-)$1	270	30	33	8.9999
uuu	chr17:76203595-76203851(+)$1	256	81	84	8.9999
UUU	chr1:1322448-1322698(-)$1	250	149	152	8.9999
UUU	chr3:33429956-33430205(-)$1	249	5	8	8.9999
UUU	chr9:125866854-125867148(+)$1	294	0	3	8.9999
UUu	chrX:48830065-48830384(-)$1	319	71	74	8.9999
UUU	chr1:21069115-21069376(-)$1	261	106	109	8.9999
UUU	chr9:6506793-6507141(+)$1	348	28	31	8.9999
UUU	chr16:85008769-85009011(-)$1	242	213	216	8.9999
UUU	chr2:27422683-27422921(-)$1	238	51	54	8.9999
UUU	chr3:52526511-52526817(+)$1	306	47	50	8.9999
UUU	chr2:61413877-61414146(+)$1	269	51	54	8.9999
UUU	chr5:176728491-176728762(-)$1	271	81	84	8.9999
UUU	chr16:24836438-24836680(+)$1	242	6	9	8.9999
UUU	chr17:40465254-40465500(-)$1	246	55	58	8.9999
UUU	chr2:220074112-220074390(+)$1	278	269	272	8.9999
UUU	chr11:2152510-2152729(-)$1	219	169	172	8.9999
UUU	chr1:31404275-31404533(-)$1	258	19	22	8.9999
UUU	chr20:42178672-42178948(+)$1	276	44	47	8.9999
UUU	chr6:28871597-28871912(-)$1	315	15	18	8.9999

#otherMatches

#Struct PSSM
:FF	chr17:1658414-1658651(+)$1	237	2	5	8.9999
gg[	chr10:98718676-98718903(+)$1	227	26	29	8.9999
:DD	chr15:34671331-34671613(-)$1	282	1	4	8.9999
ttt	chr15:34819532-34819781(-)$1	249	29	32	8.9999
fff	chr15:34671245-34671531(-)$1	286	20	23	8.9999
:cc	chr17:73571113-73571365(+)$1	252	54	57	8.9999
E{G	chr16:11844479-11844746(-)$1	267	32	35	8.9999
III	chr1:204523580-204523900(+)$1	320	20	23	8.9999
fff	chr11:32126690-32126994(+)$1	304	23	26	8.9999
E::	chr16:2581219-2581479(+)$1	260	110	113	8.9999
gJJ	chr10:28909387-28909622(+)$1	235	91	94	8.9999
wwe	chr13:41950967-41951232(+)$1	265	37	40	8.9999
ooo	chr13:33091761-33092022(-)$1	261	92	95	8.9999
c""	chrX:128580642-128580883(-)$1	241	18	21	8.9999
eee	chr13:107195866-107196087(-)$1	221	51	54	8.9999
HHH	chr4:99983722-99984031(+)$1	309	16	19	8.9999
fff	chr1:234742370-234742617(-)$1	247	24	27	8.9999
^hh	chr5:74016886-74017188(+)$1	302	36	39	8.9999
iii	chr5:6599259-6599509(-)$1	250	73	76	8.9999
fff	chr16:84087297-84087584(-)$1	287	36	39	8.9999
eee	chr3:167401731-167402158(-)$1	427	113	116	8.9999
:::	chr1:46035510-46035746(+)$1	236	0	3	8.9999
EE{	chr2:166846138-166846412(-)$1	274	20	23	8.9999
ddd	chr9:127244355-127244604(-)$1	249	60	63	8.9999
ppp	chr17:25640008-25640261(+)$1	253	97	100	8.9999
OOO	chr4:124324646-124324914(+)$1	268	11	14	8.9999
:::	chr17:78093022-78093320(+)$1	298	27	30	8.9999
mmm	chr11:64089116-64089367(+)$1	251	135	138	8.9999
iii	chr12:123998043-123998354(-)$1	311	37	40	8.9999
d::	chr20:61920825-61921058(+)$1	233	93	96	8.9999
HHH	chr6:134490429-134490718(-)$1	289	4	7	8.9999
:::	chr2:201717710-201717946(-)$1	236	0	3	8.9999
:::	chr1:18024058-18024383(+)$1	325	0	3	8.9999
:::	chr6:159056146-159056405(+)$1	259	0	3	8.9999
fff	chr2:26360025-26360304(+)$1	279	3	6	8.9999
ddd	chr3:123632507-123632750(-)$1	243	61	64	8.9999
ccc	chr2:27422575-27422818(-)$1	243	26	29	8.9999
ddd	chr14:81939181-81939495(-)$1	314	28	31	8.9999
DDN	chr20:61472272-61472570(+)$1	298	35	38	8.9999
ggg	chr19:46318623-46318889(-)$1	266	147	150	8.9999
TTT	chr12:8071743-8071980(-)$1	237	62	65	8.9999
dd!	chr3:48445184-48445437(-)$1	253	151	154	8.9999
GGG	chr12:6759701-6760043(-)$1	342	3	6	8.9999
FFF	chrX:23804083-23804318(+)$1	235	2	5	8.9999
:::	chr5:130977487-130977789(-)$1	302	5	8	8.9999
!bb	chr16:74907694-74907973(-)$1	279	40	43	8.9999
hhh	chr20:34291476-34291726(-)$1	250	19	22	8.9999
BQQ	chr2:44051040-44051277(-)$1	237	9	12	8.9999
"gg	chr7:73007768-73008019(-)$1	251	69	72	8.9999
::D	chr5:6599406-6599705(-)$1	299	0	3	8.9999
nnn	chr16:28848288-28848538(+)$1	250	85	88	8.9999
:ee	chr5:176524772-176525056(+)$1	284	138	141	8.9999
444	chr22:50637650-50638076(+)$1	426	365	368	8.9999
ooo	chr3:156865508-156865812(-)$1	304	16	19	8.9999
:::	chr20:3018765-3019029(+)$1	264	49	52	8.9999
:::	chr6:75962584-75962835(-)$1	251	31	34	8.9999
:::	chr16:67210118-67210372(-)$1	254	2	5	8.9999
:::	chr1:11903014-11903267(+)$1	253	10	13	8.9999
hhh	chr6:168372317-168372550(+)$1	233	9	12	8.9999
f]a	chr16:22345159-22345429(+)$1	270	87	90	8.9999
MMC	chr20:57570014-57570252(+)$1	238	48	51	8.9999
g[c	chr19:1009560-1009808(-)$1	248	99	102	8.9999
:::	chr1:156495362-156495623(-)$1	261	9	12	8.9999
iii	chr3:145910096-145910407(-)$1	311	28	31	8.9999
sdd	chr2:101612960-101613262(+)$1	302	16	19	8.9999
:::	chr2:95753113-95753350(-)$1	237	9	12	8.9999
eee	chr5:177022954-177023208(+)$1	254	99	102	8.9999
dd2	chr2:43449500-43449772(-)$1	272	25	28	8.9999
(((	chr2:216903085-216903357(-)$1	272	120	123	8.9999
KKE	chrX:16862789-16863037(-)$1	248	16	19	8.9999
:::	chr21:46189593-46189875(-)$1	282	58	61	8.9999
ggg	chr17:41009940-41010181(+)$1	241	69	72	8.9999
##e	chr3:48555104-48555363(-)$1	259	114	117	8.9999
$$$	chr2:192289686-192289977(+)$1	291	19	22	8.9999
ee!	chr20:45837960-45838209(-)$1	249	9	12	8.9999
[dd	chr17:3617835-3618123(-)$1	288	43	46	8.9999
)))	chr1:900616-900864(+)$1	248	67	70	8.9999
+++	chr16:16243438-16243699(-)$1	261	79	82	8.9999
ddd	chr20:45838009-45838242(-)$1	233	1	4	8.9999
NNN	chr20:60884038-60884308(-)$1	270	30	33	8.9999
ooo	chr17:76203595-76203851(+)$1	256	81	84	8.9999
:::	chr1:1322448-1322698(-)$1	250	149	152	8.9999
EEE	chr3:33429956-33430205(-)$1	249	5	8	8.9999
:::	chr9:125866854-125867148(+)$1	294	0	3	8.9999
d##	chrX:48830065-48830384(-)$1	319	71	74	8.9999
iii	chr1:21069115-21069376(-)$1	261	106	109	8.9999
Cff	chr9:6506793-6507141(+)$1	348	28	31	8.9999
g::	chr16:85008769-85009011(-)$1	242	213	216	8.9999
ggg	chr2:27422683-27422921(-)$1	238	51	54	8.9999
g::	chr3:52526511-52526817(+)$1	306	47	50	8.9999
:::	chr2:61413877-61414146(+)$1	269	51	54	8.9999
HHH	chr5:176728491-176728762(-)$1	271	81	84	8.9999
:::	chr16:24836438-24836680(+)$1	242	6	9	8.9999
vvv	chr17:40465254-40465500(-)$1	246	55	58	8.9999
eee	chr2:220074112-220074390(+)$1	278	269	272	8.9999
iii	chr11:2152510-2152729(-)$1	219	169	172	8.9999
DDD	chr1:31404275-31404533(-)$1	258	19	22	8.9999
c""	chr20:42178672-42178948(+)$1	276	44	47	8.9999
D::	chr6:28871597-28871912(-)$1	315	15	18	8.9999

#DB
.((	chr17:1658414-1658651(+)$1	1	2	5	8.9999
((.	chr10:98718676-98718903(+)$1	1	26	29	8.9999
.((	chr15:34671331-34671613(-)$1	1	1	4	8.9999
...	chr15:34819532-34819781(-)$1	1	29	32	8.9999
)))	chr15:34671245-34671531(-)$1	1	20	23	8.9999
.((	chr17:73571113-73571365(+)$1	1	54	57	8.9999
(.(	chr16:11844479-11844746(-)$1	1	32	35	8.9999
(((	chr1:204523580-204523900(+)$1	1	20	23	8.9999
)))	chr11:32126690-32126994(+)$1	1	23	26	8.9999
(..	chr16:2581219-2581479(+)$1	1	110	113	8.9999
)))	chr10:28909387-28909622(+)$1	1	91	94	8.9999
..)	chr13:41950967-41951232(+)$1	1	37	40	8.9999
...	chr13:33091761-33092022(-)$1	1	92	95	8.9999
(..	chrX:128580642-128580883(-)$1	1	18	21	8.9999
)))	chr13:107195866-107196087(-)$1	1	51	54	8.9999
(((	chr4:99983722-99984031(+)$1	1	16	19	8.9999
(((	chr1:234742370-234742617(-)$1	1	24	27	8.9999
.))	chr5:74016886-74017188(+)$1	1	36	39	8.9999
)))	chr5:6599259-6599509(-)$1	1	73	76	8.9999
(((	chr16:84087297-84087584(-)$1	1	36	39	8.9999
(((	chr3:167401731-167402158(-)$1	1	113	116	8.9999
...	chr1:46035510-46035746(+)$1	1	0	3	8.9999
((.	chr2:166846138-166846412(-)$1	1	20	23	8.9999
(((	chr9:127244355-127244604(-)$1	1	60	63	8.9999
...	chr17:25640008-25640261(+)$1	1	97	100	8.9999
...	chr4:124324646-124324914(+)$1	1	11	14	8.9999
...	chr17:78093022-78093320(+)$1	1	27	30	8.9999
...	chr11:64089116-64089367(+)$1	1	135	138	8.9999
(((	chr12:123998043-123998354(-)$1	1	37	40	8.9999
)..	chr20:61920825-61921058(+)$1	1	93	96	8.9999
(((	chr6:134490429-134490718(-)$1	1	4	7	8.9999
...	chr2:201717710-201717946(-)$1	1	0	3	8.9999
...	chr1:18024058-18024383(+)$1	1	0	3	8.9999
...	chr6:159056146-159056405(+)$1	1	0	3	8.9999
(((	chr2:26360025-26360304(+)$1	1	3	6	8.9999
)))	chr3:123632507-123632750(-)$1	1	61	64	8.9999
(((	chr2:27422575-27422818(-)$1	1	26	29	8.9999
(((	chr14:81939181-81939495(-)$1	1	28	31	8.9999
((.	chr20:61472272-61472570(+)$1	1	35	38	8.9999
(((	chr19:46318623-46318889(-)$1	1	147	150	8.9999
...	chr12:8071743-8071980(-)$1	1	62	65	8.9999
((.	chr3:48445184-48445437(-)$1	1	151	154	8.9999
(((	chr12:6759701-6760043(-)$1	1	3	6	8.9999
(((	chrX:23804083-23804318(+)$1	1	2	5	8.9999
...	chr5:130977487-130977789(-)$1	1	5	8	8.9999
.((	chr16:74907694-74907973(-)$1	1	40	43	8.9999
(((	chr20:34291476-34291726(-)$1	1	19	22	8.9999
(..	chr2:44051040-44051277(-)$1	1	9	12	8.9999
.((	chr7:73007768-73008019(-)$1	1	69	72	8.9999
..(	chr5:6599406-6599705(-)$1	1	0	3	8.9999
...	chr16:28848288-28848538(+)$1	1	85	88	8.9999
.((	chr5:176524772-176525056(+)$1	1	138	141	8.9999
...	chr22:50637650-50638076(+)$1	1	365	368	8.9999
...	chr3:156865508-156865812(-)$1	1	16	19	8.9999
...	chr20:3018765-3019029(+)$1	1	49	52	8.9999
...	chr6:75962584-75962835(-)$1	1	31	34	8.9999
...	chr16:67210118-67210372(-)$1	1	2	5	8.9999
...	chr1:11903014-11903267(+)$1	1	10	13	8.9999
(((	chr6:168372317-168372550(+)$1	1	9	12	8.9999
).)	chr16:22345159-22345429(+)$1	1	87	90	8.9999
..(	chr20:57570014-57570252(+)$1	1	48	51	8.9999
(.(	chr19:1009560-1009808(-)$1	1	99	102	8.9999
...	chr1:156495362-156495623(-)$1	1	9	12	8.9999
)))	chr3:145910096-145910407(-)$1	1	28	31	8.9999
.))	chr2:101612960-101613262(+)$1	1	16	19	8.9999
...	chr2:95753113-95753350(-)$1	1	9	12	8.9999
(((	chr5:177022954-177023208(+)$1	1	99	102	8.9999
)).	chr2:43449500-43449772(-)$1	1	25	28	8.9999
...	chr2:216903085-216903357(-)$1	1	120	123	8.9999
..(	chrX:16862789-16863037(-)$1	1	16	19	8.9999
...	chr21:46189593-46189875(-)$1	1	58	61	8.9999
)))	chr17:41009940-41010181(+)$1	1	69	72	8.9999
..(	chr3:48555104-48555363(-)$1	1	114	117	8.9999
...	chr2:192289686-192289977(+)$1	1	19	22	8.9999
((.	chr20:45837960-45838209(-)$1	1	9	12	8.9999
.((	chr17:3617835-3618123(-)$1	1	43	46	8.9999
...	chr1:900616-900864(+)$1	1	67	70	8.9999
...	chr16:16243438-16243699(-)$1	1	79	82	8.9999
(((	chr20:45838009-45838242(-)$1	1	1	4	8.9999
...	chr20:60884038-60884308(-)$1	1	30	33	8.9999
...	chr17:76203595-76203851(+)$1	1	81	84	8.9999
...	chr1:1322448-1322698(-)$1	1	149	152	8.9999
(((	chr3:33429956-33430205(-)$1	1	5	8	8.9999
...	chr9:125866854-125867148(+)$1	1	0	3	8.9999
(..	chrX:48830065-48830384(-)$1	1	71	74	8.9999
)))	chr1:21069115-21069376(-)$1	1	106	109	8.9999
(((	chr9:6506793-6507141(+)$1	1	28	31	8.9999
)..	chr16:85008769-85009011(-)$1	1	213	216	8.9999
)))	chr2:27422683-27422921(-)$1	1	51	54	8.9999
)..	chr3:52526511-52526817(+)$1	1	47	50	8.9999
...	chr2:61413877-61414146(+)$1	1	51	54	8.9999
(((	chr5:176728491-176728762(-)$1	1	81	84	8.9999
...	chr16:24836438-24836680(+)$1	1	6	9	8.9999
...	chr17:40465254-40465500(-)$1	1	55	58	8.9999
)))	chr2:220074112-220074390(+)$1	1	269	272	8.9999
)))	chr11:2152510-2152729(-)$1	1	169	172	8.9999
(((	chr1:31404275-31404533(-)$1	1	19	22	8.9999
(..	chr20:42178672-42178948(+)$1	1	44	47	8.9999
(..	chr6:28871597-28871912(-)$1	1	15	18	8.9999

#PSSM
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
U : 0.93	u : 0.06	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_UTR_m3_run1.nuc.txt

#NT
CCCUCCCUAUUCCCACUC	chr19:54656748-54657028(+)$1	280	105	123	18.2307
CCCUCCCUCCGCCCGUCC	chr16:29910618-29910953(-)$1	335	35	53	18.8076
CCCCACCUCGCUCCCCUU	chr11:68659337-68659655(-)$1	318	104	122	16.0192
CCCUACCUCUUCCACACC	chr1:1596362-1596652(-)$1	290	101	119	17.9423
ccucuccugucccucccc	chr21:47706326-47706623(+)$1	297	113	131	18.3269
GCCUCCCUCUCUCCCCCU	chr11:62649142-62649397(+)$1	255	101	119	25.5384
CCCUCCCUCUCCCAGCUC	chr2:242164159-242164414(+)$1	255	112	130	23.1346
UCUUCCCUGUCACCUCCC	chr22:38062018-38062287(+)$1	269	112	130	17.4615
UCUUCCCUCUUCCACCCA	chr3:184090230-184090538(-)$1	308	92	110	19.7692
CCCUUCCUCUCCCAUCCU	chr17:57917636-57917855(+)$1	219	117	135	25.1538
CCCUCCCUGGCAAUCCCU	chr1:15755373-15755754(+)$1	381	79	97	17.8461
ccuucccuccccuccccu	chr3:196466785-196467112(+)$1	327	131	149	23.6153
CCCUUCCUCCGCCUUCCU	chr19:41829396-41829663(+)$1	267	161	179	20.1538
GCCUCCCUUACCCACCCU	chr2:219081941-219082237(+)$1	296	192	210	22.3653
cccucccucucccuuccU	chr4:725990-726312(+)$1	322	174	192	27.9423
uccgcccucccccucccU	chr17:20945407-20945730(-)$1	323	65	83	22.0769
gccucccucccuccgccc	chr3:184097783-184098064(+)$1	281	256	274	20.2499
cccauccucccccaaccu	chr19:45323399-45323659(+)$1	260	19	37	19.9615
cccuuccccucccacccc	chr20:60550561-60550863(-)$1	302	105	123	22.9423
cccucgccuucccgcccg	chr12:53846032-53846261(+)$1	229	28	46	17.4615
cccacccucacccccacc	chr7:1028514-1028776(+)$1	262	57	75	20.5384
GCCUCCCUCCCACCCCUU	chr17:7093505-7093955(-)$1	450	19	37	20.1538
CUGUCCCUGUCCCACCCU	chr16:1828562-1828850(+)$1	288	114	132	20.5384
ACCUCCCUGGGCCACCCC	chr1:153923729-153924002(-)$1	273	15	33	18.1346
CCCGCGCUCUGCCCACCA	chr11:2160470-2160704(-)$1	234	169	187	16.6923
CCAUCCCUGUCUCUCCCU	chr20:33298180-33298561(+)$1	381	204	222	21.7884
ccuccccuggcccccccg	chr12:6715737-6716024(-)$1	287	88	106	19.7692
CCCUCCCCCUCUCCCCCG	chr1:53018655-53019028(-)$1	373	143	161	23.4230
cccucccucucccccccu	chr17:7311352-7311623(+)$1	271	146	164	31.7884
ccgucccccugucccccu	chr17:80708783-80709076(+)$1	293	37	55	19.2884
ccuuccccuucccuccAG	chr17:7154835-7155107(-)$1	272	169	187	16.1153
cccgcccuccgccgcccu	chr12:53845887-53846169(+)$1	282	74	92	21.7884
ACCUCCCCCUCACGCCCG	chr17:7308405-7308664(+)$1	259	10	28	17.6538
cccccccgcuccccgccc	chr1:211433124-211433415(+)$1	291	144	162	21.1153
CCUCUCCUCUCGCCCCCC	chr2:43453424-43453676(-)$1	252	78	96	18.8076
CCUUCCCUGACCCAGCCA	chr17:79825571-79825796(-)$1	225	28	46	19.0961
CCCUUCCUCUCCCAUCCU	chr17:57917655-57917899(+)$1	244	98	116	25.1538
CCAUCCGUCCCCCGCCAU	chr22:38013019-38013303(+)$1	284	4	22	16.7884
ccuccccucucccucccA	chr17:36904474-36904741(-)$1	267	125	143	22.8461
GACUCCCUCCCGCCCCCU	chr15:75074749-75075030(+)$1	281	76	94	18.9038
CCUUCCCUACCCCCUCCU	chr19:10765548-10765805(+)$1	257	82	100	22.7499
uccucccucuucccucau	chr20:31611281-31611515(+)$1	234	108	126	19.3846
CCCGCGCUCUGCCCACCA	chr11:2160436-2160657(-)$1	221	122	140	16.6923
CCCACCCACACCCCUCAU	chr20:61521312-61521582(-)$1	270	176	194	16.3076
uccugCCCCACCUCCCCU	chr17:76201847-76202140(+)$1	293	120	138	14.7692
cccuuccuccccaccccu	chr22:30805156-30805419(-)$1	263	121	139	22.6538
ACUUCCAUUUCCCACCCU	chr3:11888080-11888362(-)$1	282	154	172	17.5576
CCACCCCUGUCCCAACCC	chr3:9798538-9798865(+)$1	327	62	80	18.5192
cccucugcuucccucccc	chr6:33421226-33421513(+)$1	287	21	39	14.0961
cccucgcuucucccccuu	chr2:172016909-172017168(-)$1	259	0	18	16.5961
CCUUCCCUGUUUCCACCU	chr3:185440193-185440483(-)$1	290	118	136	18.6153

#otherMatches

#Struct PSSM
cc::::::::::HHHHHH	chr5:175307105-175307348(+)$1	243	91	109	18.5192
::::::::::::::::::	chr19:54656748-54657028(+)$1	280	105	123	18.2307
{CCCLLLEEEEE::CCCL	chr16:29910618-29910953(-)$1	335	35	53	18.8076
:::::::::EEEEERRRR	chr11:68659337-68659655(-)$1	318	104	122	16.0192
lccc]eeeee333ccc::	chr1:1596362-1596652(-)$1	290	101	119	17.9423
++++++cccwwwwwwwww	chr21:47706326-47706623(+)$1	297	113	131	18.3269
:ggggggg[ffffff###	chr11:62649142-62649397(+)$1	255	101	119	25.5384
MHHHHHHHH:::::bb[e	chr2:242164159-242164414(+)$1	255	112	130	23.1346
wwwwwwwwggggggg:::	chr22:38062018-38062287(+)$1	269	112	130	17.4615
:::::::::::::::::I	chr3:184090230-184090538(-)$1	308	92	110	19.7692
^^^^^^^^^^^^^^^^^^	chr17:57917636-57917855(+)$1	219	117	135	25.1538
cdddd:::DDDDKKFFFF	chr1:15755373-15755754(+)$1	381	79	97	17.8461
::::::::::::::::EE	chr3:196466785-196467112(+)$1	327	131	149	23.6153
CCC}FFFFFFDDDDBB}J	chr19:41829396-41829663(+)$1	267	161	179	20.1538
FFFFFFCCCDDDD}BB~~	chr2:219081941-219082237(+)$1	296	192	210	22.3653
"ggggggg))))))))))	chr4:725990-726312(+)$1	322	174	192	27.9423
:::bb[ccchhhhhhhh#	chr17:20945407-20945730(-)$1	323	65	83	22.0769
bb::::::::::::::::	chr3:184097783-184098064(+)$1	281	256	274	20.2499
::::::::::::::::::	chr19:45323399-45323659(+)$1	260	19	37	19.9615
:::::::::::EEEEEKK	chr20:60550561-60550863(-)$1	302	105	123	22.9423
pppppbb333eeeee22b	chr12:53846032-53846261(+)$1	229	28	46	17.4615
::::::::::::::::::	chr7:1028514-1028776(+)$1	262	57	75	20.5384
CCNNNNNCCC::::::::	chr17:7093505-7093955(-)$1	450	19	37	20.1538
DDDDMMMMEEEEE::ccc	chr16:1828562-1828850(+)$1	288	114	132	20.5384
rrrrrrreeeee::::::	chr1:153923729-153924002(-)$1	273	15	33	18.1346
?????EEEEEbboooooo	chr11:2160470-2160704(-)$1	234	169	187	16.6923
&&&&&&ccc&&&&&&&ff	chr20:33298180-33298561(+)$1	381	204	222	21.7884
ddoooooodddd::::::	chr12:6715737-6716024(-)$1	287	88	106	19.7692
cc>>>>>>>>>>>>>>>c	chr1:53018655-53019028(-)$1	373	143	161	23.4230
========!!========	chr17:7311352-7311623(+)$1	271	146	164	31.7884
::::::::::::::::::	chr17:80708783-80709076(+)$1	293	37	55	19.2884
:::::::::::::::eee	chr17:7154835-7155107(-)$1	272	169	187	16.1153
b::bbqqqqqqqqbb:::	chr12:53845887-53846169(+)$1	282	74	92	21.7884
oooooobb:::::::::b	chr17:7308405-7308664(+)$1	259	10	28	17.6538
qqqqqqqbb55555bb::	chr1:211433124-211433415(+)$1	291	144	162	21.1153
:::::::::::cccmmmm	chr2:43453424-43453676(-)$1	252	78	96	18.8076
EEEEENNNNNCCC{A{FF	chr17:79825571-79825796(-)$1	225	28	46	19.0961
^^^^^^^^^^^^^^^^^^	chr17:57917655-57917899(+)$1	244	98	116	25.1538
:::::ddddaqqqqqqqq	chr22:38013019-38013303(+)$1	284	4	22	16.7884
CCZZZBB}CCCZZZEEEE	chr17:36904474-36904741(-)$1	267	125	143	22.8461
bb22a666666ccc>>>>	chr15:75074749-75075030(+)$1	281	76	94	18.9038
^^^^^^^^^^^^^^^^^^	chr19:10765548-10765805(+)$1	257	82	100	22.7499
::::::::::::::::::	chr20:31611281-31611515(+)$1	234	108	126	19.3846
?????EEEEE::::::::	chr11:2160436-2160657(-)$1	221	122	140	16.6923
^^^^^^^^^^^^^^^^^^	chr20:61521312-61521582(-)$1	270	176	194	16.3076
}BB:IIIIIIIIIPPPPP	chr17:76201847-76202140(+)$1	293	120	138	14.7692
f::::::::::::::eee	chr22:30805156-30805419(-)$1	263	121	139	22.6538
ddd::::::::DDDD:::	chr3:11888080-11888362(-)$1	282	154	172	17.5576
fffff:::ddddappppp	chr3:9798538-9798865(+)$1	327	62	80	18.5192
oooooobb::::eeeee[	chr6:33421226-33421513(+)$1	287	21	39	14.0961
::::::::::::::::::	chr2:172016909-172017168(-)$1	259	0	18	16.5961
::::::::::::::::::	chr3:185440193-185440483(-)$1	290	118	136	18.6153

#DB
))..........((((((	chr5:175307105-175307348(+)$1	1	91	109	18.5192
..................	chr19:54656748-54657028(+)$1	1	105	123	18.2307
.(((...(((((..(((.	chr16:29910618-29910953(-)$1	1	35	53	18.8076
.........(((((....	chr11:68659337-68659655(-)$1	1	104	122	16.0192
.))).)))))...)))..	chr1:1596362-1596652(-)$1	1	101	119	17.9423
......(((.........	chr21:47706326-47706623(+)$1	1	113	131	18.3269
.(((((((.((((((...	chr11:62649142-62649397(+)$1	1	101	119	25.5384
.((((((((.....((.(	chr2:242164159-242164414(+)$1	1	112	130	23.1346
........)))))))...	chr22:38062018-38062287(+)$1	1	112	130	17.4615
.................(	chr3:184090230-184090538(-)$1	1	92	110	19.7692
..................	chr17:57917636-57917855(+)$1	1	117	135	25.1538
)))))...((((..((((	chr1:15755373-15755754(+)$1	1	79	97	17.8461
................((	chr3:196466785-196467112(+)$1	1	131	149	23.6153
))).)))))))))))).)	chr19:41829396-41829663(+)$1	1	161	179	20.1538
))))))))))))).))..	chr2:219081941-219082237(+)$1	1	192	210	22.3653
.(((((((..........	chr4:725990-726312(+)$1	1	174	192	27.9423
...((.(((((((((((.	chr17:20945407-20945730(-)$1	1	65	83	22.0769
))................	chr3:184097783-184098064(+)$1	1	256	274	20.2499
..................	chr19:45323399-45323659(+)$1	1	19	37	19.9615
...........(((((..	chr20:60550561-60550863(-)$1	1	105	123	22.9423
.....))...)))))..)	chr12:53846032-53846261(+)$1	1	28	46	17.4615
..................	chr7:1028514-1028776(+)$1	1	57	75	20.5384
((.....(((........	chr17:7093505-7093955(-)$1	1	19	37	20.1538
((((....(((((..(((	chr16:1828562-1828850(+)$1	1	114	132	20.5384
.......)))))......	chr1:153923729-153924002(-)$1	1	15	33	18.1346
.....)))))((......	chr11:2160470-2160704(-)$1	1	169	187	16.6923
......(((.......((	chr20:33298180-33298561(+)$1	1	204	222	21.7884
((......))))......	chr12:6715737-6716024(-)$1	1	88	106	19.7692
))...............)	chr1:53018655-53019028(-)$1	1	143	161	23.4230
((((((((..((((((((	chr17:7311352-7311623(+)$1	1	146	164	31.7884
..................	chr17:80708783-80709076(+)$1	1	37	55	19.2884
...............(((	chr17:7154835-7155107(-)$1	1	169	187	16.1153
)..((........))...	chr12:53845887-53846169(+)$1	1	74	92	21.7884
......)).........(	chr17:7308405-7308664(+)$1	1	10	28	17.6538
.......)).....))..	chr1:211433124-211433415(+)$1	1	144	162	21.1153
...........(((....	chr2:43453424-43453676(-)$1	1	78	96	18.8076
(((((.....(((.(.((	chr17:79825571-79825796(-)$1	1	28	46	19.0961
..................	chr17:57917655-57917899(+)$1	1	98	116	25.1538
.....(((((........	chr22:38013019-38013303(+)$1	1	4	22	16.7884
))...)).)))...))))	chr17:36904474-36904741(-)$1	1	125	143	22.8461
))..)......)))....	chr15:75074749-75075030(+)$1	1	76	94	18.9038
..................	chr19:10765548-10765805(+)$1	1	82	100	22.7499
..................	chr20:31611281-31611515(+)$1	1	108	126	19.3846
.....)))))........	chr11:2160436-2160657(-)$1	1	122	140	16.6923
..................	chr20:61521312-61521582(-)$1	1	176	194	16.3076
.)).(((((((((.....	chr17:76201847-76202140(+)$1	1	120	138	14.7692
)..............(((	chr22:30805156-30805419(-)$1	1	121	139	22.6538
)))........((((...	chr3:11888080-11888362(-)$1	1	154	172	17.5576
)))))...(((((.....	chr3:9798538-9798865(+)$1	1	62	80	18.5192
......))....(((((.	chr6:33421226-33421513(+)$1	1	21	39	14.0961
..................	chr2:172016909-172017168(-)$1	1	0	18	16.5961
..................	chr3:185440193-185440483(-)$1	1	118	136	18.6153

#PSSM
C : 0.42	c : 0.32	G : 0.07	u : 0.05	A : 0.05	U : 0.03	g : 0.01	
C : 0.53	c : 0.40	U : 0.03	A : 0.01	
C : 0.38	c : 0.28	U : 0.13	u : 0.09	A : 0.05	G : 0.01	g : 0.01	
U : 0.48	u : 0.24	c : 0.07	C : 0.05	g : 0.03	a : 0.03	G : 0.03	A : 0.01	
C : 0.48	c : 0.30	u : 0.07	U : 0.07	A : 0.03	g : 0.01	
C : 0.57	c : 0.32	g : 0.03	G : 0.03	u : 0.01	
C : 0.57	c : 0.36	G : 0.01	A : 0.01	g : 0.01	
U : 0.53	u : 0.26	c : 0.09	C : 0.05	g : 0.01	A : 0.01	
C : 0.38	c : 0.26	G : 0.15	u : 0.07	A : 0.03	g : 0.03	U : 0.03	
U : 0.34	u : 0.21	c : 0.13	C : 0.11	A : 0.09	G : 0.05	a : 0.01	g : 0.01	
C : 0.44	c : 0.30	G : 0.09	U : 0.07	g : 0.03	u : 0.03	
C : 0.38	c : 0.34	A : 0.09	U : 0.09	u : 0.03	G : 0.03	
C : 0.57	c : 0.34	A : 0.01	u : 0.01	U : 0.01	a : 0.01	
C : 0.30	A : 0.21	c : 0.19	u : 0.11	U : 0.05	a : 0.03	g : 0.03	G : 0.03	
C : 0.32	c : 0.28	U : 0.13	A : 0.09	G : 0.05	u : 0.03	g : 0.03	a : 0.01	
C : 0.57	c : 0.36	U : 0.01	A : 0.01	a : 0.01	
C : 0.49	c : 0.32	U : 0.07	A : 0.05	a : 0.01	u : 0.01	
U : 0.36	C : 0.17	u : 0.15	c : 0.11	A : 0.09	G : 0.05	g : 0.03	

#score	1041.8461538461531
#seq	52
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_transcript_m1_run1.nuc.txt

#NT
CCCCACCCUG	chr21:47675497-47675798(-)$1	301	264	274	17.5490
ccccucccaa	chr19:56091594-56092020(-)$1	426	283	293	19.8039
ccccuccacg	chr19:15353639-15353943(-)$1	304	38	48	17.1568
CCCCUCCCUG	chr6:159239556-159239884(-)$1	328	29	39	21.9607
ccccuccccg	chr20:62153248-62153498(+)$1	250	36	46	21.8627
CCCCUCCCCU	chr12:57919481-57919724(+)$1	243	75	85	18.5294
CCGCUCCCAG	chr9:137313934-137314218(+)$1	284	178	188	18.9215
CCCCUCCCCG	chr5:137803451-137803734(+)$1	283	156	166	21.8627
CUCCUCCCAG	chr7:30634763-30635061(+)$1	298	33	43	18.5294
CCACUCCCAG	chr16:2871031-2871326(+)$1	295	95	105	19.3137
CCCCUCCCUC	chr1:150525450-150525736(+)$1	286	91	101	19.0196
CCCCUCCCGG	chr4:1723899-1724270(+)$1	371	18	28	20.8823
ccccucccAG	chr17:80708893-80709151(+)$1	258	128	138	23.0392
ccccuccccu	chr1:27735168-27735458(-)$1	290	126	136	18.5294
CACCUCCCUG	chr20:30697749-30698006(+)$1	257	115	125	17.5490
ccacuccccg	chr6:31502940-31503206(-)$1	266	90	100	18.1372
CGCCUCCCAG	chr22:50024018-50024312(-)$1	294	19	29	18.5294
CCCCUCCCCC	chr19:2248438-2248725(+)$1	287	87	97	18.9215
CCCCUCCCCA	chr22:50029369-50029642(-)$1	273	39	49	18.6274
CCCUUCCCAG	chr19:46285910-46286160(-)$1	250	13	23	18.8235
cccaucccug	chr7:93264388-93264726(+)$1	338	159	169	17.6470
CCCUUCCCUG	chr4:54319-54583(+)$1	264	93	103	17.7450
ccacucccug	chr11:48022163-48022536(+)$1	373	1	11	18.2352
CCCUUCCCAG	chr22:49922311-49922604(-)$1	293	232	242	18.8235
CCCCUCCCAG	chr19:39833911-39834251(+)$1	340	50	60	23.0392
CCCAUCCCGG	chr3:47031198-47031479(+)$1	281	227	237	16.5686
CCCCACCCAC	chr12:7045929-7046178(+)$1	249	46	56	15.6862
CCCCUCCCUA	chr11:85779239-85779500(-)$1	261	24	34	18.7254
CCUCUCCCAG	chr6:34760247-34760563(+)$1	316	291	301	19.0196
CCCCUCCCCG	chr6:31588840-31589188(+)$1	348	123	133	21.8627
CCUCUCCCAG	chr19:11465297-11465586(+)$1	289	28	38	19.0196
ccccUACCAG	chr16:85627185-85627446(+)$1	261	42	52	18.7254
ccccucucug	chr1:43429041-43429376(+)$1	335	122	132	17.1568
CCCCACCCAG	chr19:2014658-2014938(-)$1	280	245	255	18.6274
CCCCUGCCAG	chr17:17723302-17723584(-)$1	282	72	82	18.8235
CCCCUACCAG	chr17:7126094-7126426(+)$1	332	196	206	18.7254
CCCCUCCCUA	chr9:139563378-139563669(+)$1	291	54	64	18.7254
ccccuccccc	chr19:17346735-17347002(-)$1	267	25	35	18.9215
CCCCUGCCAG	chr2:10282596-10282928(+)$1	332	16	26	18.8235
CCCCUCCCAC	chr14:24615879-24616343(-)$1	464	120	130	20.0980
ucccucccac	chr4:56097-56410(+)$1	313	110	120	15.3921
GCCCUCCCAG	chr6:31372104-31372355(+)$1	251	124	134	18.3333
CACCUCCCAG	chr12:57920657-57920907(+)$1	250	117	127	18.6274
CCCCUGCCUG	chr1:143187232-143187509(+)$1	277	169	179	17.7450
CCACUCCCAG	chr2:145262992-145263292(-)$1	300	104	114	19.3137
CCCCUCCUUG	chr19:10765520-10765802(+)$1	282	228	238	17.2549
CCCCUCCCUG	chr2:27264208-27264549(+)$1	341	108	118	21.9607
CCCCUCCCAU	chr7:75508661-75508977(+)$1	316	259	269	19.7058
CCACUCCCAG	chrX:73065473-73065724(-)$1	251	71	81	19.3137
CCCCUCCCCG	chr9:131016654-131016968(+)$1	314	153	163	21.8627

#otherMatches

#Struct PSSM
rrreeeee::	chr16:67267639-67267940(-)$1	301	85	95	18.9215
^^^^^^^eee	chr21:47675497-47675798(-)$1	301	264	274	17.5490
::::::::::	chr19:56091594-56092020(-)$1	426	283	293	19.8039
cqqqqqqqqc	chr19:15353639-15353943(-)$1	304	38	48	17.1568
cqqqqqqqqc	chr6:159239556-159239884(-)$1	328	29	39	21.9607
c]eeeeea]c	chr20:62153248-62153498(+)$1	250	36	46	21.8627
HHHHHHHHKK	chr12:57919481-57919724(+)$1	243	75	85	18.5294
::bbhhhhhh	chr9:137313934-137314218(+)$1	284	178	188	18.9215
>>>>>>>>>b	chr5:137803451-137803734(+)$1	283	156	166	21.8627
::::::FFFF	chr7:30634763-30635061(+)$1	298	33	43	18.5294
:::EEEEE:b	chr16:2871031-2871326(+)$1	295	95	105	19.3137
DDDCCCEEEE	chr1:150525450-150525736(+)$1	286	91	101	19.0196
dddnnnnndd	chr4:1723899-1724270(+)$1	371	18	28	20.8823
c666666ccc	chr17:80708893-80709151(+)$1	258	128	138	23.0392
^^^^^^^^^^	chr1:27735168-27735458(-)$1	290	126	136	18.5294
eee666666b	chr20:30697749-30698006(+)$1	257	115	125	17.5490
OOOODDDDGG	chr6:31502940-31503206(-)$1	266	90	100	18.1372
WWWWWWWWWW	chr22:50024018-50024312(-)$1	294	19	29	18.5294
vvvvdddd44	chr19:2248438-2248725(+)$1	287	87	97	18.9215
%%cccmmmmc	chr22:50029369-50029642(-)$1	273	39	49	18.6274
wwwwwwwwee	chr19:46285910-46286160(-)$1	250	13	23	18.8235
::DDDDLLLD	chr7:93264388-93264726(+)$1	338	159	169	17.6470
cc]ddddbb5	chr4:54319-54583(+)$1	264	93	103	17.7450
:::::::eee	chr11:48022163-48022536(+)$1	373	1	11	18.2352
+++++bb%%%	chr22:49922311-49922604(-)$1	293	232	242	18.8235
^^^^^^^^^^	chr19:39833911-39834251(+)$1	340	50	60	23.0392
!!bb[bb[bb	chr3:47031198-47031479(+)$1	281	227	237	16.5686
::::::::JJ	chr12:7045929-7046178(+)$1	249	46	56	15.6862
::::::::::	chr11:85779239-85779500(-)$1	261	24	34	18.7254
@@@@@@DDDD	chr6:34760247-34760563(+)$1	316	291	301	19.0196
cqqqqqqqqc	chr6:31588840-31589188(+)$1	348	123	133	21.8627
bb[ccc"""b	chr19:11465297-11465586(+)$1	289	28	38	19.0196
:::::GGGGG	chr16:85627185-85627446(+)$1	261	42	52	18.7254
22bbffffff	chr1:43429041-43429376(+)$1	335	122	132	17.1568
^^^^^eeeee	chr19:2014658-2014938(-)$1	280	245	255	18.6274
ffffflllff	chr17:17723302-17723584(-)$1	282	72	82	18.8235
::dddd!!cc	chr17:7126094-7126426(+)$1	332	196	206	18.7254
yyyyyyyyyy	chr9:139563378-139563669(+)$1	291	54	64	18.7254
BLLLBBLLLD	chr19:17346735-17347002(-)$1	267	25	35	18.9215
:::::DDDD{	chr2:10282596-10282928(+)$1	332	16	26	18.8235
dddd''''''	chr14:24615879-24616343(-)$1	464	120	130	20.0980
cc::::::::	chr4:56097-56410(+)$1	313	110	120	15.3921
::::::::cc	chr6:31372104-31372355(+)$1	251	124	134	18.3333
CCKKDDDD:d	chr12:57920657-57920907(+)$1	250	117	127	18.6274
:::::eeeee	chr1:143187232-143187509(+)$1	277	169	179	17.7450
>>>>ffffff	chr2:145262992-145263292(-)$1	300	104	114	19.3137
3ccc]fffff	chr19:10765520-10765802(+)$1	282	228	238	17.2549
dd::FFFFFF	chr2:27264208-27264549(+)$1	341	108	118	21.9607
2dddd:::::	chr7:75508661-75508977(+)$1	316	259	269	19.7058
:ggggggg[b	chrX:73065473-73065724(-)$1	251	71	81	19.3137
EZZZBB}ADD	chr9:131016654-131016968(+)$1	314	153	163	21.8627

#DB
...)))))..	chr16:67267639-67267940(-)$1	1	85	95	18.9215
.......)))	chr21:47675497-47675798(-)$1	1	264	274	17.5490
..........	chr19:56091594-56092020(-)$1	1	283	293	19.8039
(........)	chr19:15353639-15353943(-)$1	1	38	48	17.1568
(........)	chr6:159239556-159239884(-)$1	1	29	39	21.9607
).)))))).)	chr20:62153248-62153498(+)$1	1	36	46	21.8627
((((((((..	chr12:57919481-57919724(+)$1	1	75	85	18.5294
..((((((((	chr9:137313934-137314218(+)$1	1	178	188	18.9215
.........)	chr5:137803451-137803734(+)$1	1	156	166	21.8627
......((((	chr7:30634763-30635061(+)$1	1	33	43	18.5294
...(((((.(	chr16:2871031-2871326(+)$1	1	95	105	19.3137
)))(((((((	chr1:150525450-150525736(+)$1	1	91	101	19.0196
(((.....))	chr4:1723899-1724270(+)$1	1	18	28	20.8823
)......)))	chr17:80708893-80709151(+)$1	1	128	138	23.0392
..........	chr1:27735168-27735458(-)$1	1	126	136	18.5294
)))......)	chr20:30697749-30698006(+)$1	1	115	125	17.5490
....((((((	chr6:31502940-31503206(-)$1	1	90	100	18.1372
..........	chr22:50024018-50024312(-)$1	1	19	29	18.5294
....))))..	chr19:2248438-2248725(+)$1	1	87	97	18.9215
..(((....)	chr22:50029369-50029642(-)$1	1	39	49	18.6274
........))	chr19:46285910-46286160(-)$1	1	13	23	18.8235
..((((...(	chr7:93264388-93264726(+)$1	1	159	169	17.6470
)).)))))).	chr4:54319-54583(+)$1	1	93	103	17.7450
.......(((	chr11:48022163-48022536(+)$1	1	1	11	18.2352
.....((...	chr22:49922311-49922604(-)$1	1	232	242	18.8235
..........	chr19:39833911-39834251(+)$1	1	50	60	23.0392
..((.((.((	chr3:47031198-47031479(+)$1	1	227	237	16.5686
........((	chr12:7045929-7046178(+)$1	1	46	56	15.6862
..........	chr11:85779239-85779500(-)$1	1	24	34	18.7254
......))))	chr6:34760247-34760563(+)$1	1	291	301	19.0196
(........)	chr6:31588840-31589188(+)$1	1	123	133	21.8627
((.(((...(	chr19:11465297-11465586(+)$1	1	28	38	19.0196
.....(((((	chr16:85627185-85627446(+)$1	1	42	52	18.7254
..))))))))	chr1:43429041-43429376(+)$1	1	122	132	17.1568
.....)))))	chr19:2014658-2014938(-)$1	1	245	255	18.6274
(((((...))	chr17:17723302-17723584(-)$1	1	72	82	18.8235
..((((..((	chr17:7126094-7126426(+)$1	1	196	206	18.7254
..........	chr9:139563378-139563669(+)$1	1	54	64	18.7254
(...((...(	chr19:17346735-17347002(-)$1	1	25	35	18.9215
.....((((.	chr2:10282596-10282928(+)$1	1	16	26	18.8235
((((......	chr14:24615879-24616343(-)$1	1	120	130	20.0980
))........	chr4:56097-56410(+)$1	1	110	120	15.3921
........((	chr6:31372104-31372355(+)$1	1	124	134	18.3333
((..((((.(	chr12:57920657-57920907(+)$1	1	117	127	18.6274
.....(((((	chr1:143187232-143187509(+)$1	1	169	179	17.7450
....))))))	chr2:145262992-145263292(-)$1	1	104	114	19.3137
.))).)))))	chr19:10765520-10765802(+)$1	1	228	238	17.2549
))..((((((	chr2:27264208-27264549(+)$1	1	108	118	21.9607
.)))).....	chr7:75508661-75508977(+)$1	1	259	269	19.7058
.(((((((.(	chrX:73065473-73065724(-)$1	1	71	81	19.3137
)...)).)))	chr9:131016654-131016968(+)$1	1	153	163	21.8627

#PSSM
C : 0.74	c : 0.21	u : 0.01	G : 0.01	
C : 0.68	c : 0.23	A : 0.03	U : 0.01	G : 0.01	
C : 0.64	c : 0.19	A : 0.05	a : 0.03	U : 0.03	G : 0.01	
C : 0.68	c : 0.21	U : 0.05	a : 0.01	A : 0.01	
U : 0.72	u : 0.21	A : 0.05	
C : 0.68	c : 0.21	G : 0.05	A : 0.03	
C : 0.78	c : 0.19	u : 0.01	
C : 0.76	c : 0.19	a : 0.01	U : 0.01	
A : 0.43	U : 0.19	C : 0.13	c : 0.09	u : 0.05	a : 0.03	G : 0.03	
G : 0.60	g : 0.11	C : 0.09	A : 0.05	U : 0.03	c : 0.03	a : 0.01	u : 0.01	

#score	970.9803921568634
#seq	51
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_transcript_m1_run1.nuc.txt

#NT
uggg	chr7:205452-205713(+)$1	261	54	58	12.0000
UGGG	chr16:85647690-85647956(+)$1	266	43	47	12.0000
UGGG	chr17:38279291-38279539(+)$1	248	27	31	12.0000
UGGG	chr9:137224364-137224658(+)$1	294	9	13	12.0000
UGGG	chr2:3476836-3477110(+)$1	274	149	153	12.0000
UGGG	chr2:171572177-171572394(+)$1	217	141	145	12.0000
UGGG	chr22:47459194-47459472(+)$1	278	65	69	12.0000
UGGG	chr9:139725836-139726112(+)$1	276	48	52	12.0000
UGGG	chr16:54319445-54319743(-)$1	298	86	90	12.0000
UGGG	chr16:69355167-69355445(-)$1	278	112	116	12.0000
UGGG	chr10:105361199-105361490(-)$1	291	6	10	12.0000
UGGG	chr21:34923018-34923282(+)$1	264	68	72	12.0000
UGGG	chr2:241496679-241496983(-)$1	304	70	74	12.0000
UGGG	chr17:17698607-17698864(+)$1	257	26	30	12.0000
UGGG	chr15:69110053-69110334(-)$1	281	10	14	12.0000
UGGG	chr2:227662866-227663182(-)$1	316	123	127	12.0000
UGGG	chr2:97482293-97482571(+)$1	278	123	127	12.0000
UGGG	chr19:942659-942910(+)$1	251	48	52	12.0000
UGGG	chr4:1796326-1796596(+)$1	270	55	59	12.0000
UGGG	chr16:30750794-30751075(+)$1	281	4	8	12.0000
UGGG	chr1:27023025-27023288(+)$1	263	56	60	12.0000
UGGG	chr17:79958195-79958457(+)$1	262	77	81	12.0000
uggg	chr19:512837-513099(+)$1	262	12	16	12.0000
UGGG	chr16:1367448-1367694(+)$1	246	103	107	12.0000
UGGG	chr17:78892702-78892941(+)$1	239	114	118	12.0000
uggg	chr17:80230605-80230872(-)$1	267	17	21	12.0000
UGGG	chr1:2161474-2161723(+)$1	249	65	69	12.0000
UGGG	chr7:1140220-1140498(-)$1	278	40	44	12.0000
UGGG	chr7:1138853-1139127(-)$1	274	111	115	12.0000
UGGG	chr7:157768948-157769273(-)$1	325	61	65	12.0000
UGGG	chr8:144678729-144678998(-)$1	269	115	119	12.0000
UGGG	chr8:142425008-142425276(+)$1	268	85	89	12.0000
UGGG	chr12:133127463-133127766(+)$1	303	16	20	12.0000
UGGG	chr3:196695284-196695604(-)$1	320	184	188	12.0000
UGGG	chr7:158315460-158315739(-)$1	279	76	80	12.0000
uggg	chr21:47562862-47563074(-)$1	212	131	135	12.0000
UGGG	chr19:4713528-4713791(-)$1	263	66	70	12.0000
UGGG	chr7:73017128-73017398(-)$1	270	63	67	12.0000
UGGG	chr20:61279694-61279946(+)$1	252	9	13	12.0000
UGGG	chr9:127020433-127020709(+)$1	276	203	207	12.0000
UGGG	chr7:157650091-157650392(-)$1	301	134	138	12.0000
UGGG	chr16:89900202-89900502(+)$1	300	28	32	12.0000
Uggg	chr20:306926-307181(+)$1	255	105	109	12.0000
UGGG	chr16:75290941-75291206(-)$1	265	2	6	12.0000
uggg	chr16:29923547-29923823(-)$1	276	18	22	12.0000
uggg	chr7:158197233-158197537(-)$1	304	7	11	12.0000
UGGG	chr6:31599538-31599804(+)$1	266	37	41	12.0000
UGGG	chr4:1227293-1227553(-)$1	260	52	56	12.0000
UGGG	chr18:77491082-77491477(+)$1	395	62	66	12.0000
UGGG	chr4:982617-982856(-)$1	239	48	52	12.0000
UGGG	chr2:242168054-242168295(+)$1	241	7	11	12.0000
UGGG	chr10:101379892-101380167(-)$1	275	50	54	12.0000
UGGG	chr4:8207936-8208182(+)$1	246	9	13	12.0000
UGGG	chr7:76255990-76256273(+)$1	283	12	16	12.0000
UGGG	chr1:1241103-1241442(-)$1	339	16	20	12.0000
UGGG	chr22:47566934-47567196(+)$1	262	28	32	12.0000
UGGG	chr1:3489695-3489953(-)$1	258	10	14	12.0000
UGGG	chr12:133137236-133137527(+)$1	291	145	149	12.0000
UGGG	chr15:101848805-101849041(-)$1	236	18	22	12.0000
UGGG	chr19:59071143-59071463(+)$1	320	111	115	12.0000
UGGG	chr17:75454960-75455236(+)$1	276	58	62	12.0000
UGGG	chr16:8941585-8941855(+)$1	270	35	39	12.0000
uggg	chr4:756601-756873(+)$1	272	64	68	12.0000
UGGG	chr7:158342649-158342891(-)$1	242	10	14	12.0000
UGGG	chr20:31024650-31024902(+)$1	252	28	32	12.0000
UGGG	chr6:138752916-138753217(-)$1	301	73	77	12.0000
UGGG	chr19:18968409-18968702(+)$1	293	114	118	12.0000
UGGG	chr7:130586087-130586379(-)$1	292	10	14	12.0000
uggg	chr19:943670-943914(+)$1	244	24	28	12.0000
UGGG	chr7:157566156-157566453(-)$1	297	4	8	12.0000
UGGG	chr14:105907202-105907464(+)$1	262	64	68	12.0000
UGGG	chr7:1149125-1149419(-)$1	294	56	60	12.0000
uggg	chr6:41514189-41514434(+)$1	245	100	104	12.0000
UGGG	chr7:157768231-157768496(-)$1	265	131	135	12.0000
UGGG	chr11:887526-887780(-)$1	254	89	93	12.0000
UGGG	chr20:61279441-61279702(+)$1	261	97	101	12.0000
UGGG	chr8:610024-610311(-)$1	287	113	117	12.0000
UGGG	chr7:150027816-150028084(+)$1	268	147	151	12.0000
UGGG	chr16:1805976-1806261(+)$1	285	68	72	12.0000
UGGG	chr16:87735212-87735475(-)$1	263	67	71	12.0000
UGGG	chr7:157866481-157866749(-)$1	268	140	144	12.0000
UGGG	chr7:1129979-1130244(-)$1	265	62	66	12.0000
uggg	chr22:50727480-50727759(-)$1	279	10	14	12.0000
UGGG	chr19:933119-933371(+)$1	252	55	59	12.0000
UGGG	chr8:144946851-144947111(-)$1	260	0	4	12.0000
UGGG	chr11:706273-706546(-)$1	273	76	80	12.0000
UGGG	chr9:139127777-139128032(-)$1	255	37	41	12.0000
UGGG	chr19:934238-934491(+)$1	253	15	19	12.0000
UGGG	chr14:105715428-105715730(-)$1	302	35	39	12.0000
UGGG	chr2:242661386-242661664(+)$1	278	48	52	12.0000
UGGG	chr6:3319593-3319839(-)$1	246	100	104	12.0000
UGGG	chr21:47565084-47565351(-)$1	267	76	80	12.0000
UGGG	chr8:145013646-145013926(-)$1	280	29	33	12.0000
UGGG	chr2:153246684-153246980(+)$1	296	94	98	12.0000
UGGG	chr17:74303290-74303593(-)$1	303	2	6	12.0000
UGGG	chr2:3473758-3474028(+)$1	270	34	38	12.0000
UGGG	chr19:1410299-1410621(+)$1	322	2	6	12.0000

#otherMatches

#Struct PSSM
HHHH	chr1:2210942-2211227(+)$1	285	97	101	12.0000
[bb"	chr7:205452-205713(+)$1	261	54	58	12.0000
]eee	chr16:85647690-85647956(+)$1	266	43	47	12.0000
f[aq	chr17:38279291-38279539(+)$1	248	27	31	12.0000
dddd	chr9:137224364-137224658(+)$1	294	9	13	12.0000
e333	chr2:3476836-3477110(+)$1	274	149	153	12.0000
b[ee	chr2:171572177-171572394(+)$1	217	141	145	12.0000
qeee	chr22:47459194-47459472(+)$1	278	65	69	12.0000
DD{B	chr9:139725836-139726112(+)$1	276	48	52	12.0000
cc]d	chr16:54319445-54319743(-)$1	298	86	90	12.0000
FFFF	chr16:69355167-69355445(-)$1	278	112	116	12.0000
::gg	chr10:105361199-105361490(-)$1	291	6	10	12.0000
""ff	chr21:34923018-34923282(+)$1	264	68	72	12.0000
ffff	chr2:241496679-241496983(-)$1	304	70	74	12.0000
:ccc	chr17:17698607-17698864(+)$1	257	26	30	12.0000
HHHH	chr15:69110053-69110334(-)$1	281	10	14	12.0000
Hggg	chr2:227662866-227663182(-)$1	316	123	127	12.0000
b]ff	chr2:97482293-97482571(+)$1	278	123	127	12.0000
dddc	chr19:942659-942910(+)$1	251	48	52	12.0000
oeee	chr4:1796326-1796596(+)$1	270	55	59	12.0000
FFFF	chr16:30750794-30751075(+)$1	281	4	8	12.0000
b[bb	chr1:27023025-27023288(+)$1	263	56	60	12.0000
pccc	chr17:79958195-79958457(+)$1	262	77	81	12.0000
mccc	chr19:512837-513099(+)$1	262	12	16	12.0000
{GGG	chr16:1367448-1367694(+)$1	246	103	107	12.0000
JJgg	chr17:78892702-78892941(+)$1	239	114	118	12.0000
dddd	chr17:80230605-80230872(-)$1	267	17	21	12.0000
KFFF	chr1:2161474-2161723(+)$1	249	65	69	12.0000
A{CC	chr7:1140220-1140498(-)$1	278	40	44	12.0000
hhh[	chr7:1138853-1139127(-)$1	274	111	115	12.0000
fffg	chr7:157768948-157769273(-)$1	325	61	65	12.0000
%%%%	chr8:144678729-144678998(-)$1	269	115	119	12.0000
fffH	chr8:142425008-142425276(+)$1	268	85	89	12.0000
gggg	chr12:133127463-133127766(+)$1	303	16	20	12.0000
ffff	chr3:196695284-196695604(-)$1	320	184	188	12.0000
dddd	chr7:158315460-158315739(-)$1	279	76	80	12.0000
III:	chr21:47562862-47563074(-)$1	212	131	135	12.0000
ccc]	chr19:4713528-4713791(-)$1	263	66	70	12.0000
ff22	chr7:73017128-73017398(-)$1	270	63	67	12.0000
FFFF	chr20:61279694-61279946(+)$1	252	9	13	12.0000
GGGG	chr9:127020433-127020709(+)$1	276	203	207	12.0000
:FFF	chr7:157650091-157650392(-)$1	301	134	138	12.0000
[ggg	chr16:89900202-89900502(+)$1	300	28	32	12.0000
:JJJ	chr20:306926-307181(+)$1	255	105	109	12.0000
ddde	chr16:75290941-75291206(-)$1	265	2	6	12.0000
i[cc	chr16:29923547-29923823(-)$1	276	18	22	12.0000
BLLL	chr7:158197233-158197537(-)$1	304	7	11	12.0000
bbnn	chr6:31599538-31599804(+)$1	266	37	41	12.0000
dlll	chr4:1227293-1227553(-)$1	260	52	56	12.0000
]eee	chr18:77491082-77491477(+)$1	395	62	66	12.0000
HHHH	chr4:982617-982856(-)$1	239	48	52	12.0000
iiii	chr2:242168054-242168295(+)$1	241	7	11	12.0000
qqqq	chr10:101379892-101380167(-)$1	275	50	54	12.0000
KDDD	chr4:8207936-8208182(+)$1	246	9	13	12.0000
dddn	chr7:76255990-76256273(+)$1	283	12	16	12.0000
c[ee	chr1:1241103-1241442(-)$1	339	16	20	12.0000
cc[d	chr22:47566934-47567196(+)$1	262	28	32	12.0000
gggg	chr1:3489695-3489953(-)$1	258	10	14	12.0000
eeee	chr12:133137236-133137527(+)$1	291	145	149	12.0000
FFFF	chr15:101848805-101849041(-)$1	236	18	22	12.0000
22cc	chr19:59071143-59071463(+)$1	320	111	115	12.0000
ECCC	chr17:75454960-75455236(+)$1	276	58	62	12.0000
eeeo	chr16:8941585-8941855(+)$1	270	35	39	12.0000
ee]e	chr4:756601-756873(+)$1	272	64	68	12.0000
c:ff	chr7:158342649-158342891(-)$1	242	10	14	12.0000
KCCC	chr20:31024650-31024902(+)$1	252	28	32	12.0000
llee	chr6:138752916-138753217(-)$1	301	73	77	12.0000
FFFF	chr19:18968409-18968702(+)$1	293	114	118	12.0000
:::B	chr7:130586087-130586379(-)$1	292	10	14	12.0000
EEE:	chr19:943670-943914(+)$1	244	24	28	12.0000
EEgg	chr7:157566156-157566453(-)$1	297	4	8	12.0000
==""	chr14:105907202-105907464(+)$1	262	64	68	12.0000
GKKA	chr7:1149125-1149419(-)$1	294	56	60	12.0000
ddd]	chr6:41514189-41514434(+)$1	245	100	104	12.0000
c!!c	chr7:157768231-157768496(-)$1	265	131	135	12.0000
bb22	chr11:887526-887780(-)$1	254	89	93	12.0000
IIII	chr20:61279441-61279702(+)$1	261	97	101	12.0000
:JJJ	chr8:610024-610311(-)$1	287	113	117	12.0000
HHHZ	chr7:150027816-150028084(+)$1	268	147	151	12.0000
bbmm	chr16:1805976-1806261(+)$1	285	68	72	12.0000
[a[a	chr16:87735212-87735475(-)$1	263	67	71	12.0000
eeee	chr7:157866481-157866749(-)$1	268	140	144	12.0000
:ggg	chr7:1129979-1130244(-)$1	265	62	66	12.0000
CC{C	chr22:50727480-50727759(-)$1	279	10	14	12.0000
::::	chr19:933119-933371(+)$1	252	55	59	12.0000
:a[f	chr8:144946851-144947111(-)$1	260	0	4	12.0000
eeee	chr11:706273-706546(-)$1	273	76	80	12.0000
FFFF	chr9:139127777-139128032(-)$1	255	37	41	12.0000
CCCL	chr19:934238-934491(+)$1	253	15	19	12.0000
ccc2	chr14:105715428-105715730(-)$1	302	35	39	12.0000
h!!c	chr2:242661386-242661664(+)$1	278	48	52	12.0000
]eee	chr6:3319593-3319839(-)$1	246	100	104	12.0000
===c	chr21:47565084-47565351(-)$1	267	76	80	12.0000
!a[=	chr8:145013646-145013926(-)$1	280	29	33	12.0000
DDDD	chr2:153246684-153246980(+)$1	296	94	98	12.0000
EEEE	chr17:74303290-74303593(-)$1	303	2	6	12.0000
HHHH	chr2:3473758-3474028(+)$1	270	34	38	12.0000
gggg	chr19:1410299-1410621(+)$1	322	2	6	12.0000

#DB
((((	chr1:2210942-2211227(+)$1	1	97	101	12.0000
.((.	chr7:205452-205713(+)$1	1	54	58	12.0000
.)))	chr16:85647690-85647956(+)$1	1	43	47	12.0000
(.(.	chr17:38279291-38279539(+)$1	1	27	31	12.0000
((((	chr9:137224364-137224658(+)$1	1	9	13	12.0000
)...	chr2:3476836-3477110(+)$1	1	149	153	12.0000
(.((	chr2:171572177-171572394(+)$1	1	141	145	12.0000
.)))	chr22:47459194-47459472(+)$1	1	65	69	12.0000
((.(	chr9:139725836-139726112(+)$1	1	48	52	12.0000
)).)	chr16:54319445-54319743(-)$1	1	86	90	12.0000
((((	chr16:69355167-69355445(-)$1	1	112	116	12.0000
..((	chr10:105361199-105361490(-)$1	1	6	10	12.0000
..((	chr21:34923018-34923282(+)$1	1	68	72	12.0000
))))	chr2:241496679-241496983(-)$1	1	70	74	12.0000
.(((	chr17:17698607-17698864(+)$1	1	26	30	12.0000
((((	chr15:69110053-69110334(-)$1	1	10	14	12.0000
((((	chr2:227662866-227663182(-)$1	1	123	127	12.0000
).))	chr2:97482293-97482571(+)$1	1	123	127	12.0000
)))(	chr19:942659-942910(+)$1	1	48	52	12.0000
.)))	chr4:1796326-1796596(+)$1	1	55	59	12.0000
((((	chr16:30750794-30751075(+)$1	1	4	8	12.0000
(.((	chr1:27023025-27023288(+)$1	1	56	60	12.0000
.)))	chr17:79958195-79958457(+)$1	1	77	81	12.0000
.)))	chr19:512837-513099(+)$1	1	12	16	12.0000
.(((	chr16:1367448-1367694(+)$1	1	103	107	12.0000
))((	chr17:78892702-78892941(+)$1	1	114	118	12.0000
((((	chr17:80230605-80230872(-)$1	1	17	21	12.0000
.(((	chr1:2161474-2161723(+)$1	1	65	69	12.0000
(.((	chr7:1140220-1140498(-)$1	1	40	44	12.0000
(((.	chr7:1138853-1139127(-)$1	1	111	115	12.0000
)))(	chr7:157768948-157769273(-)$1	1	61	65	12.0000
....	chr8:144678729-144678998(-)$1	1	115	119	12.0000
))))	chr8:142425008-142425276(+)$1	1	85	89	12.0000
((((	chr12:133127463-133127766(+)$1	1	16	20	12.0000
((((	chr3:196695284-196695604(-)$1	1	184	188	12.0000
))))	chr7:158315460-158315739(-)$1	1	76	80	12.0000
(((.	chr21:47562862-47563074(-)$1	1	131	135	12.0000
))).	chr19:4713528-4713791(-)$1	1	66	70	12.0000
))..	chr7:73017128-73017398(-)$1	1	63	67	12.0000
((((	chr20:61279694-61279946(+)$1	1	9	13	12.0000
))))	chr9:127020433-127020709(+)$1	1	203	207	12.0000
.(((	chr7:157650091-157650392(-)$1	1	134	138	12.0000
.(((	chr16:89900202-89900502(+)$1	1	28	32	12.0000
.)))	chr20:306926-307181(+)$1	1	105	109	12.0000
((((	chr16:75290941-75291206(-)$1	1	2	6	12.0000
(.((	chr16:29923547-29923823(-)$1	1	18	22	12.0000
(...	chr7:158197233-158197537(-)$1	1	7	11	12.0000
((..	chr6:31599538-31599804(+)$1	1	37	41	12.0000
(...	chr4:1227293-1227553(-)$1	1	52	56	12.0000
.)))	chr18:77491082-77491477(+)$1	1	62	66	12.0000
((((	chr4:982617-982856(-)$1	1	48	52	12.0000
((((	chr2:242168054-242168295(+)$1	1	7	11	12.0000
....	chr10:101379892-101380167(-)$1	1	50	54	12.0000
.(((	chr4:8207936-8208182(+)$1	1	9	13	12.0000
(((.	chr7:76255990-76256273(+)$1	1	12	16	12.0000
(.((	chr1:1241103-1241442(-)$1	1	16	20	12.0000
((.(	chr22:47566934-47567196(+)$1	1	28	32	12.0000
((((	chr1:3489695-3489953(-)$1	1	10	14	12.0000
))))	chr12:133137236-133137527(+)$1	1	145	149	12.0000
((((	chr15:101848805-101849041(-)$1	1	18	22	12.0000
..))	chr19:59071143-59071463(+)$1	1	111	115	12.0000
)(((	chr17:75454960-75455236(+)$1	1	58	62	12.0000
(((.	chr16:8941585-8941855(+)$1	1	35	39	12.0000
)).)	chr4:756601-756873(+)$1	1	64	68	12.0000
).((	chr7:158342649-158342891(-)$1	1	10	14	12.0000
.(((	chr20:31024650-31024902(+)$1	1	28	32	12.0000
..))	chr6:138752916-138753217(-)$1	1	73	77	12.0000
((((	chr19:18968409-18968702(+)$1	1	114	118	12.0000
...(	chr7:130586087-130586379(-)$1	1	10	14	12.0000
(((.	chr19:943670-943914(+)$1	1	24	28	12.0000
((((	chr7:157566156-157566453(-)$1	1	4	8	12.0000
((..	chr14:105907202-105907464(+)$1	1	64	68	12.0000
(..(	chr7:1149125-1149419(-)$1	1	56	60	12.0000
))).	chr6:41514189-41514434(+)$1	1	100	104	12.0000
(..(	chr7:157768231-157768496(-)$1	1	131	135	12.0000
))..	chr11:887526-887780(-)$1	1	89	93	12.0000
))))	chr20:61279441-61279702(+)$1	1	97	101	12.0000
.(((	chr8:610024-610311(-)$1	1	113	117	12.0000
))).	chr7:150027816-150028084(+)$1	1	147	151	12.0000
((..	chr16:1805976-1806261(+)$1	1	68	72	12.0000
.(.(	chr16:87735212-87735475(-)$1	1	67	71	12.0000
((((	chr7:157866481-157866749(-)$1	1	140	144	12.0000
.(((	chr7:1129979-1130244(-)$1	1	62	66	12.0000
((.(	chr22:50727480-50727759(-)$1	1	10	14	12.0000
....	chr19:933119-933371(+)$1	1	55	59	12.0000
.(.(	chr8:144946851-144947111(-)$1	1	0	4	12.0000
((((	chr11:706273-706546(-)$1	1	76	80	12.0000
((((	chr9:139127777-139128032(-)$1	1	37	41	12.0000
(((.	chr19:934238-934491(+)$1	1	15	19	12.0000
))).	chr14:105715428-105715730(-)$1	1	35	39	12.0000
(..(	chr2:242661386-242661664(+)$1	1	48	52	12.0000
.)))	chr6:3319593-3319839(-)$1	1	100	104	12.0000
((((	chr21:47565084-47565351(-)$1	1	76	80	12.0000
.(.(	chr8:145013646-145013926(-)$1	1	29	33	12.0000
((((	chr2:153246684-153246980(+)$1	1	94	98	12.0000
((((	chr17:74303290-74303593(-)$1	1	2	6	12.0000
((((	chr2:3473758-3474028(+)$1	1	34	38	12.0000
((((	chr19:1410299-1410621(+)$1	1	2	6	12.0000

#PSSM
U : 0.89	u : 0.10	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	
G : 0.88	g : 0.11	

#score	1176.0000000000002
#seq	98
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_transcript_m3_run2.nuc.txt

#NT
AGAUUUGGAA	chr5:70806029-70806277(+)$1	248	156	166	12.7272
AGAAGGGGUA	chr12:122992666-122992913(-)$1	247	142	152	11.5454
aaaagaugaa	chr18:39556632-39556968(+)$1	336	165	175	12.8181
AGAAGGAGAA	chr12:6690356-6690607(-)$1	251	102	112	14.0000
aguaauugaa	chr7:119433319-119433575(-)$1	256	4	14	11.0000
AGAGAUGGAA	chr10:70098796-70099029(+)$1	233	174	184	13.0909
GAAAGUGGAA	chr8:101725257-101725496(-)$1	239	119	129	13.6363
AGAAAUAGAA	chr7:91631594-91631847(+)$1	253	96	106	14.7272
AGAAGAAGAA	chr5:33467644-33467905(+)$1	261	153	163	14.6363
auaaguugaa	chr16:47328272-47328575(-)$1	303	88	98	14.6363
AGAAGUGGAA	chr14:61278600-61278930(+)$1	330	136	146	19.6363
UGAAGUGGAU	chr11:62291603-62291812(-)$1	209	24	34	12.4545
aaauguggaa	chr10:18854936-18855219(-)$1	283	167	177	13.5454
AGAAGUUUAA	chr18:39561221-39561546(+)$1	325	137	147	13.8181
aaaaguugaa	chr4:129977850-129978161(-)$1	311	68	78	15.7272
AGAAGAAGAA	chr9:127998544-127998798(-)$1	254	119	129	14.6363
AGAAAUAGAU	chr4:68383826-68384144(-)$1	318	94	104	11.0909
agaagaggag	chr3:167727895-167728134(-)$1	239	14	24	12.7272
AAAAGGGGAA	chr22:22890177-22890430(-)$1	253	111	121	13.8181
AAAGGUGGAA	chr11:62284844-62285115(-)$1	271	92	102	13.6363
AUAAGUUAAA	chr7:91643462-91643696(+)$1	234	30	40	11.0000
GGAAGUUGAA	chr5:134260124-134260399(+)$1	275	51	61	14.2727
aggaauggaa	chr10:18858609-18858894(-)$1	285	39	49	12.5454
AGAAGAGAAA	chr1:214816305-214816544(+)$1	239	73	83	13.0909
AGAUUUGGAA	chr10:17279196-17279548(+)$1	352	187	197	12.7272
agaaguggcc	chr7:119427019-119427281(-)$1	262	196	206	11.0909
AAAAGUUGCA	chr1:171526286-171526511(+)$1	225	21	31	11.2727
AGAAGAGAAA	chr2:187368820-187369039(+)$1	219	72	82	13.0909
AGAUGUGGAU	chr11:62293185-62293427(-)$1	242	91	101	12.1818
AGAAUUUGAA	chr7:91623834-91624063(+)$1	229	105	115	14.9090
AAAGGUGGAA	chr11:62284793-62285044(-)$1	251	21	31	13.6363
AGAAGUGAAA	chr4:13605609-13605939(-)$1	330	14	24	15.9999
agagguggaa	chr7:119438012-119438304(-)$1	292	147	157	15.9090
agaaaaggaa	chr18:9254585-9254877(+)$1	292	149	159	13.9090
aaaaguuaaa	chr8:91273420-91273704(+)$1	284	274	284	12.0909
ugaacuggaa	chr10:18854183-18854481(-)$1	298	84	94	12.8181
AGAACUGGGA	chr13:98667721-98667996(+)$1	275	109	119	11.8181
AGAAGAUGAU	chr21:34931479-34931768(+)$1	289	82	92	11.4545
AGAAGUGGAU	chr11:62298293-62298533(-)$1	240	76	86	16.0000
AGAACUGGAA	chr1:220195597-220195855(-)$1	258	147	157	16.3636
UGCAGUGGAA	chr2:55253846-55254193(-)$1	347	80	90	11.7272
UAAAGUAGAA	chr1:39800589-39800871(+)$1	282	88	98	11.7272
AGAAGAAGAA	chr15:44063202-44063416(+)$1	214	182	192	14.6363
ggaaauggaa	chr4:770808-771123(-)$1	315	153	163	13.0909
AGGAGUGAAA	chr8:91284458-91284720(+)$1	262	168	178	11.7272
agaaauagau	chr8:91267366-91267642(+)$1	276	53	63	11.0909
UAAAGUGGAA	chr8:30938619-30938886(+)$1	267	18	28	13.8181
UAAAGUGGAA	chr11:62293662-62293889(-)$1	227	190	200	13.8181
AGAGGUGGAG	chr17:34171000-34171235(+)$1	235	118	128	11.9090
AAAAGAUGAA	chr21:40571099-40571412(-)$1	313	149	159	12.8181
GGUAGUGGAA	chr7:158485905-158486185(-)$1	280	130	140	11.7272
AGUAGUAGAA	chr11:11964381-11964703(+)$1	322	100	110	13.3636
AAAAUUUGAA	chr6:35837484-35837745(-)$1	261	241	251	12.6363
AGAAGUUGAA	chr7:27832583-27832810(+)$1	227	136	146	18.0000

#otherMatches

#Struct PSSM
:::::CCC::	chr8:91386277-91386581(+)$1	304	290	300	12.9090
:::eeeeeoo	chr5:70806029-70806277(+)$1	248	156	166	12.7272
ff!!hhhhhh	chr12:122992666-122992913(-)$1	247	142	152	11.5454
6666iiiiii	chr18:39556632-39556968(+)$1	336	165	175	12.8181
DDD}EEEEE:	chr12:6690356-6690607(-)$1	251	102	112	14.0000
FFF:EEEEE{	chr7:119433319-119433575(-)$1	256	4	14	11.0000
333ccc4444	chr10:70098796-70099029(+)$1	233	174	184	13.0909
[eeeee"""i	chr8:101725257-101725496(-)$1	239	119	129	13.6363
fffff4444c	chr7:91631594-91631847(+)$1	253	96	106	14.7272
::::::::ff	chr5:33467644-33467905(+)$1	261	153	163	14.6363
d:::bb[bbo	chr16:47328272-47328575(-)$1	303	88	98	14.6363
ee::FFFFFF	chr14:61278600-61278930(+)$1	330	136	146	19.6363
ee!!bb[fff	chr11:62291603-62291812(-)$1	209	24	34	12.4545
::::::::::	chr10:18854936-18855219(-)$1	283	167	177	13.5454
hhhhhhhhrr	chr18:39561221-39561546(+)$1	325	137	147	13.8181
$$$$$dddd"	chr4:129977850-129978161(-)$1	311	68	78	15.7272
:dddd!!ddd	chr9:127998544-127998798(-)$1	254	119	129	14.6363
:::::::ddd	chr4:68383826-68384144(-)$1	318	94	104	11.0909
ccc[ccc[bb	chr3:167727895-167728134(-)$1	239	14	24	12.7272
::::::::::	chr22:22890177-22890430(-)$1	253	111	121	13.8181
EKKCCC{A{G	chr11:62284844-62285115(-)$1	271	92	102	13.6363
mmmmccc22a	chr7:91643462-91643696(+)$1	234	30	40	11.0000
RRRDDDDKKI	chr5:134260124-134260399(+)$1	275	51	61	14.2727
::::::::::	chr10:18858609-18858894(-)$1	285	39	49	12.5454
csssssssss	chr1:214816305-214816544(+)$1	239	73	83	13.0909
"""ddddddd	chr10:17279196-17279548(+)$1	352	187	197	12.7272
cc[dddd%%%	chr7:119427019-119427281(-)$1	262	196	206	11.0909
gg####dddd	chr1:171526286-171526511(+)$1	225	21	31	11.2727
::::::::::	chr2:187368820-187369039(+)$1	219	72	82	13.0909
333=======	chr11:62293185-62293427(-)$1	242	91	101	12.1818
cmmmmccc]c	chr7:91623834-91624063(+)$1	229	105	115	14.9090
EKKCCC{A{G	chr11:62284793-62285044(-)$1	251	21	31	13.6363
(((((ddddn	chr4:13605609-13605939(-)$1	330	14	24	15.9999
[a[eeeee##	chr7:119438012-119438304(-)$1	292	147	157	15.9090
::::::::::	chr18:9254585-9254877(+)$1	292	149	159	13.9090
mmmdddd:::	chr8:91273420-91273704(+)$1	284	274	284	12.0909
c"""aooooo	chr10:18854183-18854481(-)$1	298	84	94	12.8181
ddd!!cccdd	chr13:98667721-98667996(+)$1	275	109	119	11.8181
LDDDDKKFFF	chr21:34931479-34931768(+)$1	289	82	92	11.4545
cmmmmcccCC	chr11:62298293-62298533(-)$1	240	76	86	16.0000
nnnnndddd:	chr1:220195597-220195855(-)$1	258	147	157	16.3636
HH::::::::	chr2:55253846-55254193(-)$1	347	80	90	11.7272
zzzeeeee::	chr1:39800589-39800871(+)$1	282	88	98	11.7272
F@@@@@@@@@	chr15:44063202-44063416(+)$1	214	182	192	14.6363
ettttttttt	chr4:770808-771123(-)$1	315	153	163	13.0909
::::::::::	chr8:91284458-91284720(+)$1	262	168	178	11.7272
GBB{DDDD{E	chr8:91267366-91267642(+)$1	276	53	63	11.0909
HHHHHHEEEE	chr8:30938619-30938886(+)$1	267	18	28	13.8181
ooooooffff	chr11:62293662-62293889(-)$1	227	190	200	13.8181
eeeee]ccc:	chr17:34171000-34171235(+)$1	235	118	128	11.9090
b"""ccc&&&	chr21:40571099-40571412(-)$1	313	149	159	12.8181
qqqqqqqa22	chr7:158485905-158486185(-)$1	280	130	140	11.7272
LLDDDD::::	chr11:11964381-11964703(+)$1	322	100	110	13.3636
cc:::::CCC	chr6:35837484-35837745(-)$1	261	241	251	12.6363
iiiii]====	chr7:27832583-27832810(+)$1	227	136	146	18.0000

#DB
.....)))..	chr8:91386277-91386581(+)$1	1	290	300	12.9090
...(((((..	chr5:70806029-70806277(+)$1	1	156	166	12.7272
((..((((((	chr12:122992666-122992913(-)$1	1	142	152	11.5454
....))))))	chr18:39556632-39556968(+)$1	1	165	175	12.8181
))).))))).	chr12:6690356-6690607(-)$1	1	102	112	14.0000
(((.(((((.	chr7:119433319-119433575(-)$1	1	4	14	11.0000
...)))....	chr10:70098796-70099029(+)$1	1	174	184	13.0909
.(((((...(	chr8:101725257-101725496(-)$1	1	119	129	13.6363
)))))....)	chr7:91631594-91631847(+)$1	1	96	106	14.7272
........((	chr5:33467644-33467905(+)$1	1	153	163	14.6363
)...((.((.	chr16:47328272-47328575(-)$1	1	88	98	14.6363
))..))))))	chr14:61278600-61278930(+)$1	1	136	146	19.6363
((..((.(((	chr11:62291603-62291812(-)$1	1	24	34	12.4545
..........	chr10:18854936-18855219(-)$1	1	167	177	13.5454
((((((((..	chr18:39561221-39561546(+)$1	1	137	147	13.8181
.....((((.	chr4:129977850-129978161(-)$1	1	68	78	15.7272
.((((..(((	chr9:127998544-127998798(-)$1	1	119	129	14.6363
.......(((	chr4:68383826-68384144(-)$1	1	94	104	11.0909
(((.(((.((	chr3:167727895-167728134(-)$1	1	14	24	12.7272
..........	chr22:22890177-22890430(-)$1	1	111	121	13.8181
(..(((.(.(	chr11:62284844-62285115(-)$1	1	92	102	13.6363
....)))..)	chr7:91643462-91643696(+)$1	1	30	40	11.0000
...((((..(	chr5:134260124-134260399(+)$1	1	51	61	14.2727
..........	chr10:18858609-18858894(-)$1	1	39	49	12.5454
(.........	chr1:214816305-214816544(+)$1	1	73	83	13.0909
...(((((((	chr10:17279196-17279548(+)$1	1	187	197	12.7272
((.((((...	chr7:119427019-119427281(-)$1	1	196	206	11.0909
((....((((	chr1:171526286-171526511(+)$1	1	21	31	11.2727
..........	chr2:187368820-187369039(+)$1	1	72	82	13.0909
...)))))))	chr11:62293185-62293427(-)$1	1	91	101	12.1818
(....))).)	chr7:91623834-91624063(+)$1	1	105	115	14.9090
(..(((.(.(	chr11:62284793-62285044(-)$1	1	21	31	13.6363
.....((((.	chr4:13605609-13605939(-)$1	1	14	24	15.9999
.(.(((((..	chr7:119438012-119438304(-)$1	1	147	157	15.9090
..........	chr18:9254585-9254877(+)$1	1	149	159	13.9090
...))))...	chr8:91273420-91273704(+)$1	1	274	284	12.0909
(...(.....	chr10:18854183-18854481(-)$1	1	84	94	12.8181
(((..(((((	chr13:98667721-98667996(+)$1	1	109	119	11.8181
.((((..(((	chr21:34931479-34931768(+)$1	1	82	92	11.4545
(....)))))	chr11:62298293-62298533(-)$1	1	76	86	16.0000
.....)))).	chr1:220195597-220195855(-)$1	1	147	157	16.3636
))........	chr2:55253846-55254193(-)$1	1	80	90	11.7272
...)))))..	chr1:39800589-39800871(+)$1	1	88	98	11.7272
).........	chr15:44063202-44063416(+)$1	1	182	192	14.6363
(.........	chr4:770808-771123(-)$1	1	153	163	13.0909
..........	chr8:91284458-91284720(+)$1	1	168	178	11.7272
(((.((((.(	chr8:91267366-91267642(+)$1	1	53	63	11.0909
((((((((((	chr8:30938619-30938886(+)$1	1	18	28	13.8181
......))))	chr11:62293662-62293889(-)$1	1	190	200	13.8181
))))).))).	chr17:34171000-34171235(+)$1	1	118	128	11.9090
(...(((...	chr21:40571099-40571412(-)$1	1	149	159	12.8181
.......)..	chr7:158485905-158486185(-)$1	1	130	140	11.7272
..((((....	chr11:11964381-11964703(+)$1	1	100	110	13.3636
)).....)))	chr6:35837484-35837745(-)$1	1	241	251	12.6363
))))).))))	chr7:27832583-27832810(+)$1	1	136	146	18.0000

#PSSM
A : 0.58	a : 0.23	U : 0.09	G : 0.05	u : 0.01	g : 0.01	
G : 0.52	g : 0.18	A : 0.18	a : 0.07	u : 0.01	U : 0.01	
A : 0.65	a : 0.23	U : 0.03	u : 0.01	g : 0.01	C : 0.01	G : 0.01	
A : 0.60	a : 0.23	G : 0.07	U : 0.05	u : 0.01	g : 0.01	
G : 0.56	g : 0.14	a : 0.09	U : 0.07	A : 0.05	C : 0.03	u : 0.01	c : 0.01	
U : 0.54	u : 0.21	A : 0.12	G : 0.05	a : 0.05	
G : 0.41	g : 0.16	U : 0.16	A : 0.14	u : 0.09	a : 0.01	
G : 0.61	g : 0.23	A : 0.09	a : 0.03	U : 0.01	
A : 0.67	a : 0.25	U : 0.01	c : 0.01	C : 0.01	G : 0.01	
A : 0.61	a : 0.21	U : 0.09	g : 0.01	c : 0.01	u : 0.01	G : 0.01	

#score	735.0909090909093
#seq	55
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_transcript_m1_run2.nuc.txt

#NT
CAGGAGGAUGAAGGAGAAGAUGA	chr9:131456819-131457056(+)$1	237	97	120	30.9387
gaagaagaugaugaagaugaaga	chr9:100773452-100773713(+)$1	261	156	179	50.7346
gaagaggaagaggaagaugaaga	chr11:129991472-129991771(+)$1	299	162	185	47.6734
gaagaggaagaggaagaugaaga	chr11:129991571-129991806(+)$1	235	63	86	47.6734
gaagaggaagaagaagaugaaga	chr2:99992741-99993045(+)$1	304	130	153	47.9795
GAUGAAGAGGAGGAACAUGGAGG	chr1:155883866-155884154(-)$1	288	114	137	32.1632
gaagaagaggaagaagaagaaga	chr17:4575288-4575634(-)$1	346	28	51	46.4489
gaugaacaugaugaacaugauga	chr2:170667684-170667933(+)$1	249	112	135	36.3469
gaggaagaugaggaagaUGAUCA	chrX:53588970-53589221(-)$1	251	126	149	39.5102
Aaagaagaagaaaaagaagaaga	chr1:31836813-31837132(+)$1	319	178	201	39.6122
AAAGAAGUAGAAGAAGAUGAAUA	chr12:104333186-104333404(+)$1	218	166	189	37.0612
GAAGAGGAGGAGGAAGAGGAAGA	chr1:36216769-36217091(-)$1	322	100	123	43.8979
gaagaagaugaugaagaugaaga	chr9:100773553-100773771(+)$1	218	55	78	50.7346
GAAGAUGAGAAAAAAGAUGAAGA	chr12:76449798-76450042(-)$1	244	128	151	38.2857
gacgaagaugaugaagaugauga	chr2:232325323-232325598(-)$1	275	155	178	44.7142
gaagaggaugaugaagaugaaga	chr20:3765399-3765702(-)$1	303	132	155	48.5918
gaagaagaugaugaugaugauga	chr9:131456110-131456388(+)$1	278	97	120	44.7142
gaggaagaugaggaagaugaaga	chr13:31035369-31035667(-)$1	298	87	110	46.6530
gaagaagaggaagaagaaaaagu	chr2:203167636-203167882(+)$1	246	9	32	36.9591
gaaacagaugaugaaggagaaga	chr9:100777545-100777748(+)$1	203	138	161	34.8163
GUAGAUGACGAGGAAGAUGAAGA	chr15:69072648-69072912(-)$1	264	130	153	40.6326
GGGGAAGAAGAAGGAGAUGAGGA	chr12:76442879-76443126(-)$1	247	99	122	35.5306
GAAGAUGAAAAUGAGGAUGAAGA	chr8:17869088-17869434(+)$1	346	134	157	40.5306
gaagaaggggaagaagaggaaga	chr1:150195411-150195665(-)$1	254	126	149	41.8571
gaagaugaugaugaugaugaaga	chr1:186295161-186295470(-)$1	309	121	144	44.4081
gaaacagaugaugaaggagaaga	chr9:100777601-100777856(+)$1	255	82	105	34.8163
gaagaagaagaugaugaugaaga	chr1:52305957-52306232(-)$1	275	158	181	47.6734
gaagaagaugaugaugaugauga	chr9:131456193-131456418(+)$1	225	14	37	44.7142
gaagaagaagaugaagaugagga	chr4:174253130-174253339(-)$1	209	61	84	47.8775
gaugaggaggaggaaggugaaga	chr15:69075220-69075494(-)$1	274	152	175	39.6122
UCUGAAGAAGAGCAAGAAGAAGA	chr4:2930080-2930394(+)$1	314	136	159	31.6530
AAAGAAGAGGAUGAGGAUGAUGA	chr10:70520836-70521050(+)$1	214	65	88	39.8163
gaagaggaggaugaagaugaaga	chr20:13756432-13756857(-)$1	425	129	152	47.8775
GAAGAAGAAGAAGAGGAUGAUGA	chr12:6879222-6879425(+)$1	203	105	128	43.8979
gaugaagaugaugaagaugaaga	chr8:124382090-124382367(-)$1	277	204	227	48.0816
GAUGAAGAUGAUGAAGAGGAAGA	chr1:150198838-150199203(-)$1	365	81	104	45.3265
gaagaagaagaugaugaugaaga	chr1:52305891-52306157(-)$1	266	83	106	47.6734
GAUGAAGAUGAUAUUGAUGAAGA	chr11:9461947-9462255(+)$1	308	68	91	36.3469
gaagcaggagaggaagaggaaaa	chr14:39649884-39650194(+)$1	310	25	48	33.8979
GAGGUagacgaagaagaggaaga	chr2:232576505-232576751(+)$1	246	127	150	38.1836
gaagaagagaaggaagaggaaaa	chr5:179151579-179151835(+)$1	256	141	164	37.6734
acagagcaagacgaagaugaaga	chr12:104341101-104341308(+)$1	207	44	67	33.7959
GGGGAAGAAGAAGGAGAUGAGGA	chr12:76442926-76443131(-)$1	205	104	127	35.5306
gaagaggaagauaaagaugauga	chr6:44217997-44218207(+)$1	210	93	116	42.3673
gaagaagaugaugaagaugaaga	chr9:100773513-100773753(+)$1	240	95	118	50.7346
gaagaagaaaaagaagaagaaga	chr12:95876888-95877159(+)$1	271	136	159	43.4897
GAUGAAGAAGAUGAAGAUGAGGA	chr9:100774602-100774807(+)$1	205	118	141	45.2244
gaagaggaagaagagaaggaaga	chr5:179151635-179151885(+)$1	250	79	102	37.0612

#otherMatches

#Struct PSSM
:::::::::::::::::::::::	chr4:13338726-13338983(+)$1	257	86	109	37.5714
GGGGGGGKKJJJJJJJJJJJ{BB	chr9:131456819-131457056(+)$1	237	97	120	30.9387
ddd>>>>>>>>>>>>>>>>>>ee	chr9:100773452-100773713(+)$1	261	156	179	50.7346
:::::eeeee[bb!!========	chr11:129991472-129991771(+)$1	299	162	185	47.6734
777dddd::::EEEEE{CCC{A{	chr11:129991571-129991806(+)$1	235	63	86	47.6734
:::::::::::::::::::::::	chr2:99992741-99993045(+)$1	304	130	153	47.9795
::::HHHHHHHHKKBB{CCC{EE	chr1:155883866-155884154(-)$1	288	114	137	32.1632
C::::::::::::::::::::::	chr17:4575288-4575634(-)$1	346	28	51	46.4489
[bb"""ccc[bbmmmmbb]ccc3	chr2:170667684-170667933(+)$1	249	112	135	36.3469
eeee####eeeee[bb####eee	chrX:53588970-53589221(-)$1	251	126	149	39.5102
:::::::::::::::::::::::	chr1:31836813-31837132(+)$1	319	178	201	39.6122
d22eeeee::::hhhhhhhh^^^	chr12:104333186-104333404(+)$1	218	166	189	37.0612
:::::::::::::::::::::::	chr1:36216769-36217091(-)$1	322	100	123	43.8979
:::::::::::::::::::::::	chr9:100773553-100773771(+)$1	218	55	78	50.7346
d]dddd]ccc55555ggggggg2	chr12:76449798-76450042(-)$1	244	128	151	38.2857
b::::::::::dddd[eeeee##	chr2:232325323-232325598(-)$1	275	155	178	44.7142
::::FFFFFF{BBMMMMBBLLLC	chr20:3765399-3765702(-)$1	303	132	155	48.5918
]bb::::bb[bbmmmmbb]bb::	chr9:131456110-131456388(+)$1	278	97	120	44.7142
hhh!!bb[bb+++++++++++++	chr13:31035369-31035667(-)$1	298	87	110	46.6530
GGGG{FFFFFF:::::::::::a	chr2:203167636-203167882(+)$1	246	9	32	36.9591
::::::::EEEEE}EEEEE::::	chr9:100777545-100777748(+)$1	203	138	161	34.8163
geeeee]bb]ddddccc!!ffff	chr15:69072648-69072912(-)$1	264	130	153	40.6326
hhhhhhhhFFFFFF::::::ccc	chr12:76442879-76443126(-)$1	247	99	122	35.5306
KKBBLLLIIIIIIIII{CCCNNN	chr8:17869088-17869434(+)$1	346	134	157	40.5306
:::::::::::::::::::::::	chr1:150195411-150195665(-)$1	254	126	149	41.8571
b:::bb[bbmmmmbb]bb::DDD	chr1:186295161-186295470(-)$1	309	121	144	44.4081
::::ccc[a[bb"""bbyyyyyy	chr9:100777601-100777856(+)$1	255	82	105	34.8163
JJJJJJJJJJJJ}BB}BBZZZEE	chr1:52305957-52306232(-)$1	275	158	181	47.6734
:::::::::::::::::::::::	chr9:131456193-131456418(+)$1	225	14	37	44.7142
::::::DDDDPPPPPPPDDDD::	chr4:174253130-174253339(-)$1	209	61	84	47.8775
>>>>>>>>>>>dddd]a]ccc22	chr15:69075220-69075494(-)$1	274	152	175	39.6122
dnnnnndddd]bb:::::BB}A}	chr4:2930080-2930394(+)$1	314	136	159	31.6530
::::::::::::::::JJJJJJJ	chr10:70520836-70521050(+)$1	214	65	88	39.8163
eeee666666bb]bb]bb:::::	chr20:13756432-13756857(-)$1	425	129	152	47.8775
d]bb4444eeeee]bb]a]bb33	chr12:6879222-6879425(+)$1	203	105	128	43.8979
:::::GGGGGGG~~~~DDDDYYD	chr8:124382090-124382367(-)$1	277	204	227	48.0816
444a]ggggggg>>>>>>>>>>>	chr1:150198838-150199203(-)$1	365	81	104	45.3265
::::::::::::::::::::bb[	chr1:52305891-52306157(-)$1	266	83	106	47.6734
eee[ccc[ddddccc"""hhhhh	chr11:9461947-9462255(+)$1	308	68	91	36.3469
:::::::::::::::::::::::	chr14:39649884-39650194(+)$1	310	25	48	33.8979
::a[eeeee[ccc"""iiiiiii	chr2:232576505-232576751(+)$1	246	127	150	38.1836
d::::::::::::::::::::::	chr5:179151579-179151835(+)$1	256	141	164	37.6734
+ffffffeeeee$$$$$bb####	chr12:104341101-104341308(+)$1	207	44	67	33.7959
Hccc!!a[bb"""a[ccc[aooo	chr12:76442926-76443131(-)$1	205	104	127	35.5306
:::::::::::::::::::::::	chr6:44217997-44218207(+)$1	210	93	116	42.3673
ddd55555a22ccc:::::::::	chr9:100773513-100773753(+)$1	240	95	118	50.7346
b::::::::::::::::::::::	chr12:95876888-95877159(+)$1	271	136	159	43.4897
eee!!ddddccc[ffffff[a[b	chr9:100774602-100774807(+)$1	205	118	141	45.2244
b22dddd:::::::::::::eee	chr5:179151635-179151885(+)$1	250	79	102	37.0612

#DB
.......................	chr4:13338726-13338983(+)$1	1	86	109	37.5714
(((((((..(((((((((((.((	chr9:131456819-131457056(+)$1	1	97	120	30.9387
)))..................))	chr9:100773452-100773713(+)$1	1	156	179	50.7346
.....(((((.((..((((((((	chr11:129991472-129991771(+)$1	1	162	185	47.6734
...))))....(((((.(((.(.	chr11:129991571-129991806(+)$1	1	63	86	47.6734
.......................	chr2:99992741-99993045(+)$1	1	130	153	47.9795
....((((((((..((.(((.((	chr1:155883866-155884154(-)$1	1	114	137	32.1632
(......................	chr17:4575288-4575634(-)$1	1	28	51	46.4489
.((...(((.((....)).))).	chr2:170667684-170667933(+)$1	1	112	135	36.3469
((((....(((((.((....(((	chrX:53588970-53589221(-)$1	1	126	149	39.5102
.......................	chr1:31836813-31837132(+)$1	1	178	201	39.6122
)..)))))....((((((((...	chr12:104333186-104333404(+)$1	1	166	189	37.0612
.......................	chr1:36216769-36217091(-)$1	1	100	123	43.8979
.......................	chr9:100773553-100773771(+)$1	1	55	78	50.7346
).)))).))).....))))))).	chr12:76449798-76450042(-)$1	1	128	151	38.2857
)..........((((.(((((..	chr2:232325323-232325598(-)$1	1	155	178	44.7142
....((((((.((....((...(	chr20:3765399-3765702(-)$1	1	132	155	48.5918
.))....((.((....)).))..	chr9:131456110-131456388(+)$1	1	97	120	44.7142
(((..((.((.............	chr13:31035369-31035667(-)$1	1	87	110	46.6530
((((.((((((...........(	chr2:203167636-203167882(+)$1	1	9	32	36.9591
........))))).)))))....	chr9:100777545-100777748(+)$1	1	138	161	34.8163
)))))).)).))))(((..((((	chr15:69072648-69072912(-)$1	1	130	153	40.6326
))))))))((((((......(((	chr12:76442879-76443126(-)$1	1	99	122	35.5306
..((...(((((((((.(((...	chr8:17869088-17869434(+)$1	1	134	157	40.5306
.......................	chr1:150195411-150195665(-)$1	1	126	149	41.8571
)...((.((....)).))..)))	chr1:186295161-186295470(-)$1	1	121	144	44.4081
....(((.(.((...((......	chr9:100777601-100777856(+)$1	1	82	105	34.8163
)))))))))))).)).))...))	chr1:52305957-52306232(-)$1	1	158	181	47.6734
.......................	chr9:131456193-131456418(+)$1	1	14	37	44.7142
......((((.......((((..	chr4:174253130-174253339(-)$1	1	61	84	47.8775
...........)))).).)))..	chr15:69075220-69075494(-)$1	1	152	175	39.6122
(.....)))).)).....)).).	chr4:2930080-2930394(+)$1	1	136	159	31.6530
................(((((((	chr10:70520836-70521050(+)$1	1	65	88	39.8163
))))......)).)).)).....	chr20:13756432-13756857(-)$1	1	129	152	47.8775
).))....))))).)).).))..	chr12:6879222-6879425(+)$1	1	105	128	43.8979
.....)))))))....))))..)	chr8:124382090-124382367(-)$1	1	204	227	48.0816
...).)))))))...........	chr1:150198838-150199203(-)$1	1	81	104	45.3265
....................((.	chr1:52305891-52306157(-)$1	1	83	106	47.6734
(((.(((.(((((((...(((((	chr11:9461947-9462255(+)$1	1	68	91	36.3469
.......................	chr14:39649884-39650194(+)$1	1	25	48	33.8979
..(.(((((.(((...(((((((	chr2:232576505-232576751(+)$1	1	127	150	38.1836
)......................	chr5:179151579-179151835(+)$1	1	141	164	37.6734
.(((((((((((.....((....	chr12:104341101-104341308(+)$1	1	44	67	33.7959
((((..(.((...(.(((.(...	chr12:76442926-76443131(-)$1	1	104	127	35.5306
.......................	chr6:44217997-44218207(+)$1	1	93	116	42.3673
))).....)..))).........	chr9:100773513-100773753(+)$1	1	95	118	50.7346
)......................	chr12:95876888-95877159(+)$1	1	136	159	43.4897
(((..(((((((.((((((.(.(	chr9:100774602-100774807(+)$1	1	118	141	45.2244
)..)))).............(((	chr5:179151635-179151885(+)$1	1	79	102	37.0612

#PSSM
g : 0.63	G : 0.24	A : 0.06	C : 0.02	U : 0.02	a : 0.02	
a : 0.65	A : 0.24	G : 0.04	U : 0.02	C : 0.02	c : 0.02	
a : 0.55	A : 0.14	U : 0.10	G : 0.08	u : 0.06	g : 0.04	c : 0.02	
g : 0.63	G : 0.32	a : 0.04	
a : 0.61	A : 0.30	c : 0.06	U : 0.02	
a : 0.46	g : 0.20	A : 0.20	U : 0.06	G : 0.04	u : 0.02	
g : 0.65	G : 0.30	c : 0.04	
a : 0.65	A : 0.28	g : 0.04	U : 0.02	
u : 0.28	a : 0.26	A : 0.14	g : 0.12	G : 0.08	U : 0.06	C : 0.02	c : 0.02	
g : 0.63	G : 0.26	a : 0.06	A : 0.04	
a : 0.69	A : 0.30	
u : 0.36	a : 0.16	g : 0.14	A : 0.12	U : 0.10	G : 0.08	c : 0.02	
g : 0.63	G : 0.24	a : 0.06	A : 0.04	C : 0.02	
a : 0.69	A : 0.22	G : 0.06	U : 0.02	
a : 0.57	A : 0.22	u : 0.10	G : 0.06	U : 0.02	g : 0.02	
g : 0.65	G : 0.28	C : 0.02	c : 0.02	a : 0.02	
a : 0.63	A : 0.30	g : 0.06	
u : 0.44	U : 0.24	a : 0.12	g : 0.10	A : 0.04	G : 0.04	
g : 0.65	G : 0.32	a : 0.02	
a : 0.67	A : 0.30	G : 0.02	
a : 0.53	A : 0.18	u : 0.10	U : 0.08	G : 0.06	c : 0.02	g : 0.02	
g : 0.63	G : 0.28	a : 0.04	C : 0.02	U : 0.02	
a : 0.65	A : 0.30	G : 0.02	u : 0.02	

#score	2039.3673469387768
#seq	49
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF215XPR_WDR3_transcript_m2_run2.nuc.txt

#NT
cuauaguguguuacuagagaaguuucucugaacguguagagcaccgaaaaccacgaggaagagagguagcguuuucuccugaacgugaagccggcuuucuggcguugcuuggcugcaacugccgucagccauugaugaucguucuucucuccguauuggggagugagagggagagaacgcggucugag	chr17:19093316-19093590(-)$1	274	57	245	559.0000

#otherMatches

#Struct PSSM
:::eeeeellleeeeeEEEEE{FFFFFFCCCLLLCCC{EEEEE{DDDDLLLDDDDffffff"""ccc[ffffffooooooffffff333ccc22ffffffccceeeeeooooooeeeee]cccDDDDFFFFFF:::bbmmmmbb::ffffffnnnnnffffff:============[cccpppppppc	chr17:18965249-18965542(+)$1	293	0	188	559.0000
ff[eeeeellleeeee]ffffff]hhhhhhhh]ffffff::::::IIIIIIIIIKKCCCRRRRRRRRRJJJJJJJJJJJJbb[ccc[bb"""dddd!!a[ccceeeeeooooooeeeee]ccca22dddd]bb]ccc]bb::ddddffffffnnnnnffffff]ddddJJJJJJJJJJJJYYCCCYYI	chr17:19093316-19093590(-)$1	274	57	245	559.0000

#DB
...(((((...)))))(((((.(((((((((...(((.(((((.((((...((((((((((...(((.((((((......))))))...)))..))))))((((((((......))))).)))((((((((((...((....))..((((((.....)))))).((((((((((((.(((.......)	chr17:18965249-18965542(+)$1	1	0	188	559.0000
((.(((((...))))).)))))).)))))))).))))))......(((((((((..(((.........((((((((((((((.(((.((...((((..(.((((((((......))))).))))..)))).)).))).))..((((((((((.....)))))).))))))))))))))))..)))..)	chr17:19093316-19093590(-)$1	1	57	245	559.0000

#PSSM
c : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
c : 0.50	a : 0.50	
c : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 0.50	a : 0.50	
c : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	

#score	1118.0
#seq	2
#width	188
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_UTR_m1_run2.nuc.txt

#NT
ggcggggccgggg	chr6:170123959-170124248(-)$1	289	100	113	24.8771
GGCGGAGGCGGGG	chr7:5569508-5569758(-)$1	250	225	238	24.6140
ggcgcgggcggga	chr1:1243139-1243406(-)$1	267	122	135	23.2105
GGCGGGGGCGGGG	chr16:89786879-89787178(-)$1	299	17	30	29.0000
GCCGAGGGCGGGA	chr20:62688733-62688975(+)$1	242	104	117	19.0000
GUCGCGGGCGGGA	chr2:183902783-183903052(-)$1	269	121	134	19.2631
GGCGGGGACGAGG	chr3:49044987-49045247(+)$1	260	127	140	20.4912
GAAGGGGGCGGGG	chr8:144678746-144678989(-)$1	243	26	39	21.4561
GGUGGGGGCGGGG	chr8:22224983-22225300(+)$1	317	11	24	25.3157
AGUgggggcgggc	chr16:75284644-75284909(-)$1	265	111	124	18.5614
GGCGGGGGACGGC	chr17:7211174-7211424(+)$1	250	115	128	18.7368
GACGGGGGCGGAG	chr13:24153372-24153631(+)$1	259	25	38	20.8421
GGCGCGGGCGGGA	chr17:7477036-7477311(+)$1	275	99	112	23.2105
ggcaggggcgggg	chr11:3013154-3013467(-)$1	313	113	126	25.1403
GUUGGGGGCGGGG	chr19:2270197-2270429(+)$1	232	24	37	21.3684
GGCGGGGGCGGAG	chr17:63556547-63556789(-)$1	242	98	111	24.7894
ggcgggggccggg	chr11:842825-843110(+)$1	285	254	267	24.9649
GGCGGGGGCUGGA	chr17:75315838-75316103(+)$1	265	120	133	22.1578
ggcggggcggggc	chr13:113863738-113863997(+)$1	259	83	96	18.4736
ggccgggccgggc	chr2:11484329-11484567(-)$1	238	92	105	18.7368
GGCGGCGGCGGGG	chr12:133405090-133405349(-)$1	259	50	63	24.8771
GGCGGGUGAGGGG	chr17:80190016-80190277(+)$1	261	214	227	21.0175
cgcggcggcgggc	chr14:32546299-32546558(+)$1	259	33	46	18.3859
gccgggggccggg	chr16:4400900-4401300(-)$1	400	113	126	21.3684
gccgggggcgggu	chr8:30669833-30670093(-)$1	260	82	95	22.4210
CGCGGGGGCGAGG	chr17:74380179-74380432(+)$1	253	77	90	20.7543
GGCGGGCACGGGG	chr16:1413497-1413781(-)$1	284	186	199	20.2280
GGAGGGGGCGAGG	chr6:151187459-151187742(+)$1	283	98	111	21.1929
ggcgggugcgggg	chr3:52567604-52567906(-)$1	302	155	168	24.7894
ggcuggggcggag	chr2:183902926-183903187(-)$1	261	80	93	20.8421
ggcgcgggcgugc	chr22:41488086-41488355(+)$1	269	192	205	19.0000
CCcgggggcgggg	chr17:36955635-36955924(-)$1	289	17	30	21.3684
ggccggggcggcg	chr14:23790595-23790854(+)$1	259	141	154	21.0175
ugcugggGCGGGU	chr16:75282008-75282280(-)$1	272	92	105	17.8596
GGCGAGGGCGGGC	chr17:79860000-79860248(-)$1	248	169	182	22.6842
ggcggggggAGGG	chr3:48470688-48470942(-)$1	254	22	35	20.8421
GGCCCGGGCGGGG	chr17:36955861-36956145(-)$1	284	19	32	22.0701
cgcgcgggcggga	chr3:13461595-13461878(-)$1	283	74	87	19.1754
ggcggggggAGGG	chr3:48470759-48471037(-)$1	278	117	130	20.8421
ggaaggggcgggg	chr19:42788121-42788369(+)$1	248	40	53	21.5438
UGCGGGGGUGGGG	chr7:1577316-1577592(+)$1	276	52	65	20.6666
GGCGGGUGAGGGG	chr17:80190134-80190409(+)$1	275	96	109	21.0175
GGUGGGGGCGGGG	chr17:79860483-79860800(-)$1	317	132	145	25.3157
GGCAGGGGCCGGC	chr22:41488522-41488777(+)$1	255	144	157	18.6491
GGCGCGGGCGGCU	chr2:242254385-242254690(-)$1	305	266	279	18.4736
GCCGGGGCCGGGG	chr20:62694437-62694758(+)$1	321	158	171	21.2807
gcccggggcgggg	chr2:242447571-242447832(-)$1	261	32	45	21.7192
GGAGGGGGAgggg	chr10:102759112-102759369(+)$1	257	108	121	21.6315
GGGGGUGGCGGGG	chr19:42758624-42758904(-)$1	280	57	70	20.7543
GGCGGCGGCGCGG	chr22:39916980-39917260(+)$1	280	83	96	20.4912
ggagcggGCGGGC	chr11:18034155-18034429(-)$1	274	91	104	19.7017
gggggcggcgggg	chr16:53165002-53165291(+)$1	289	154	167	21.0175
GGCGCGGGCGGGA	chr17:7477111-7477400(+)$1	289	24	37	23.2105
ggccgggGCGUGG	chr20:57267737-57268015(+)$1	278	194	207	21.0175
ggcgggugcgggg	chr11:849856-850118(+)$1	262	126	139	24.7894
GGCGGGGGAGGUG	chr8:101963107-101963384(-)$1	277	101	114	20.8421

#otherMatches

#Struct PSSM
ccc]a]aeeeee[	chr5:138629655-138629972(+)$1	317	179	192	26.4561
fff]bb]bb333b	chr6:170123959-170124248(-)$1	289	100	113	24.8771
hhhh!!ccclllc	chr7:5569508-5569758(-)$1	250	225	238	24.6140
ddd[eeeee[aoo	chr1:1243139-1243406(-)$1	267	122	135	23.2105
fff::ddddllld	chr16:89786879-89787178(-)$1	299	17	30	29.0000
ee333dddd]bb:	chr20:62688733-62688975(+)$1	242	104	117	19.0000
tttttttbb333g	chr2:183902783-183903052(-)$1	269	121	134	19.2631
dddssssssssss	chr3:49044987-49045247(+)$1	260	127	140	20.4912
IIIII::ddddnn	chr8:144678746-144678989(-)$1	243	26	39	21.4561
FFFFbb[ffffff	chr8:22224983-22225300(+)$1	317	11	24	25.3157
ffffa[ddddmmm	chr16:75284644-75284909(-)$1	265	111	124	18.5614
ddd]bb333dddd	chr17:7211174-7211424(+)$1	250	115	128	18.7368
!!ccc[eeeee[e	chr13:24153372-24153631(+)$1	259	25	38	20.8421
f]iiiiiiiii::	chr17:7477036-7477311(+)$1	275	99	112	23.2105
"bbmmmmbb333e	chr11:3013154-3013467(-)$1	313	113	126	25.1403
VVVVVVVHHHHHH	chr19:2270197-2270429(+)$1	232	24	37	21.3684
====[bb[a"""a	chr17:63556547-63556789(-)$1	242	98	111	24.7894
]bb]ccc]bba[f	chr11:842825-843110(+)$1	285	254	267	24.9649
bbccc[eeeee!!	chr17:75315838-75316103(+)$1	265	120	133	22.1578
]bb]ccc:::BB{	chr13:113863738-113863997(+)$1	259	83	96	18.4736
eeee!!ccc[ddd	chr2:11484329-11484567(-)$1	238	92	105	18.7368
GGGGGGffffffh	chr12:133405090-133405349(-)$1	259	50	63	24.8771
GGGGGG::ccc[e	chr17:80190016-80190277(+)$1	261	214	227	21.0175
ccchhhhhhhh[a	chr14:32546299-32546558(+)$1	259	33	46	18.3859
DDD}A}IIIIIII	chr16:4400900-4401300(-)$1	400	113	126	21.3684
dddd22a]eeeee	chr8:30669833-30670093(-)$1	260	82	95	22.4210
cmmmmccc]a22c	chr17:74380179-74380432(+)$1	253	77	90	20.7543
Gggggggg[gggg	chr16:1413497-1413781(-)$1	284	186	199	20.2280
IIIIIIICCCBB{	chr6:151187459-151187742(+)$1	283	98	111	21.1929
ddd"""dddd[cc	chr3:52567604-52567906(-)$1	302	155	168	24.7894
::dddd[bbnnnn	chr2:183902926-183903187(-)$1	261	80	93	20.8421
ffff]a]a]====	chr22:41488086-41488355(+)$1	269	192	205	19.0000
FFKKBB{BBKKGG	chr17:36955635-36955924(-)$1	289	17	30	21.3684
JJJJJ:ddddmmm	chr14:23790595-23790854(+)$1	259	141	154	21.0175
eee333iiiiiii	chr16:75282008-75282280(-)$1	272	92	105	17.8596
hhh!!bbnnnnnb	chr17:79860000-79860248(-)$1	248	169	182	22.6842
""annnnna333b	chr3:48470688-48470942(-)$1	254	22	35	20.8421
JJJJJFFFFFFA{	chr17:36955861-36956145(-)$1	284	19	32	22.0701
eeee]ggggggg]	chr3:13461595-13461878(-)$1	283	74	87	19.1754
eeeEEEEEYYCCC	chr3:48470759-48471037(-)$1	278	117	130	20.8421
DLLLEEEEEa[ao	chr19:42788121-42788369(+)$1	248	40	53	21.5438
hhhh]iiiiiiii	chr7:1577316-1577592(+)$1	276	52	65	20.6666
!eeeeeppppppp	chr17:80190134-80190409(+)$1	275	96	109	21.0175
dddDDDDEEEEE{	chr17:79860483-79860800(-)$1	317	132	145	25.3157
bdddd"""fffff	chr22:41488522-41488777(+)$1	255	144	157	18.6491
___DDDDYYJJJJ	chr2:242254385-242254690(-)$1	305	266	279	18.4736
dddd]ffffff]b	chr20:62694437-62694758(+)$1	321	158	171	21.2807
{AIIIIIIIIIEE	chr2:242447571-242447832(-)$1	261	32	45	21.7192
DD{BB{BB{BBBB	chr10:102759112-102759369(+)$1	257	108	121	21.6315
iiiiiiii]dddd	chr19:42758624-42758904(-)$1	280	57	70	20.7543
iiiiii[dddd!!	chr22:39916980-39917260(+)$1	280	83	96	20.4912
::CCC{DDDD:gg	chr11:18034155-18034429(-)$1	274	91	104	19.7017
I::hhhhhhhh!!	chr16:53165002-53165291(+)$1	289	154	167	21.0175
C{BBFFFFFFddd	chr17:7477111-7477400(+)$1	289	24	37	23.2105
CCYYDDDD}FFFF	chr20:57267737-57268015(+)$1	278	194	207	21.0175
=======ccc]bb	chr11:849856-850118(+)$1	262	126	139	24.7894
b===========2	chr8:101963107-101963384(-)$1	277	101	114	20.8421

#DB
))).).)(((((.	chr5:138629655-138629972(+)$1	1	179	192	26.4561
))).)).))...)	chr6:170123959-170124248(-)$1	1	100	113	24.8771
((((..(((...)	chr7:5569508-5569758(-)$1	1	225	238	24.6140
(((.(((((.(..	chr1:1243139-1243406(-)$1	1	122	135	23.2105
)))..((((...)	chr16:89786879-89787178(-)$1	1	17	30	29.0000
))...)))).)).	chr20:62688733-62688975(+)$1	1	104	117	19.0000
.......))...)	chr2:183902783-183903052(-)$1	1	121	134	19.2631
(((..........	chr3:49044987-49045247(+)$1	1	127	140	20.4912
(((((..((((..	chr8:144678746-144678989(-)$1	1	26	39	21.4561
((((((.((((((	chr8:22224983-22225300(+)$1	1	11	24	25.3157
))))(.((((...	chr16:75284644-75284909(-)$1	1	111	124	18.5614
))).))...))))	chr17:7211174-7211424(+)$1	1	115	128	18.7368
..(((.(((((.(	chr13:24153372-24153631(+)$1	1	25	38	20.8421
).)))))))))..	chr17:7477036-7477311(+)$1	1	99	112	23.2105
.((....))...)	chr11:3013154-3013467(-)$1	1	113	126	25.1403
.......((((((	chr19:2270197-2270429(+)$1	1	24	37	21.3684
((((.((.(...(	chr17:63556547-63556789(-)$1	1	98	111	24.7894
.)).))).))(.(	chr11:842825-843110(+)$1	1	254	267	24.9649
(((((.(((((..	chr17:75315838-75316103(+)$1	1	120	133	22.1578
.)).)))...((.	chr13:113863738-113863997(+)$1	1	83	96	18.4736
((((..(((.(((	chr2:11484329-11484567(-)$1	1	92	105	18.7368
(((((((((((((	chr12:133405090-133405349(-)$1	1	50	63	24.8771
))))))..(((.(	chr17:80190016-80190277(+)$1	1	214	227	21.0175
(((((((((((.(	chr14:32546299-32546558(+)$1	1	33	46	18.3859
))).).)))))))	chr16:4400900-4401300(-)$1	1	113	126	21.3684
))))..).)))))	chr8:30669833-30670093(-)$1	1	82	95	22.4210
(....))).)..)	chr17:74380179-74380432(+)$1	1	77	90	20.7543
)(((((((.((((	chr16:1413497-1413781(-)$1	1	186	199	20.2280
((((((((((((.	chr6:151187459-151187742(+)$1	1	98	111	21.1929
(((...((((.((	chr3:52567604-52567906(-)$1	1	155	168	24.7894
..((((.((....	chr2:183902926-183903187(-)$1	1	80	93	20.8421
)))).).).))))	chr22:41488086-41488355(+)$1	1	192	205	19.0000
((..((.((..((	chr17:36955635-36955924(-)$1	1	17	30	21.3684
(((((.((((...	chr14:23790595-23790854(+)$1	1	141	154	21.0175
)))...)))))))	chr16:75282008-75282280(-)$1	1	92	105	17.8596
(((..((.....)	chr17:79860000-79860248(-)$1	1	169	182	22.6842
..(.....)...)	chr3:48470688-48470942(-)$1	1	22	35	20.8421
((((((((((((.	chr17:36955861-36956145(-)$1	1	19	32	22.0701
)))).))))))).	chr3:13461595-13461878(-)$1	1	74	87	19.1754
))))))))..)))	chr3:48470759-48471037(-)$1	1	117	130	20.8421
(...((((((.(.	chr19:42788121-42788369(+)$1	1	40	53	21.5438
)))).))))))))	chr7:1577316-1577592(+)$1	1	52	65	20.6666
.(((((.......	chr17:80190134-80190409(+)$1	1	96	109	21.0175
)))(((((((((.	chr17:79860483-79860800(-)$1	1	132	145	25.3157
(((((...(((((	chr22:41488522-41488777(+)$1	1	144	157	18.6491
...))))..))))	chr2:242254385-242254690(-)$1	1	266	279	18.4736
)))).)))))).)	chr20:62694437-62694758(+)$1	1	158	171	21.2807
.((((((((((((	chr2:242447571-242447832(-)$1	1	32	45	21.7192
((.((.((.((((	chr10:102759112-102759369(+)$1	1	108	121	21.6315
)))))))).))))	chr19:42758624-42758904(-)$1	1	57	70	20.7543
((((((.((((..	chr22:39916980-39917260(+)$1	1	83	96	20.4912
..(((.((((.((	chr11:18034155-18034429(-)$1	1	91	104	19.7017
)..((((((((..	chr16:53165002-53165291(+)$1	1	154	167	21.0175
(.(((((((((((	chr17:7477111-7477400(+)$1	1	24	37	23.2105
))..)))).))))	chr20:57267737-57268015(+)$1	1	194	207	21.0175
)))))))))).))	chr11:849856-850118(+)$1	1	126	139	24.7894
)))))))))))).	chr8:101963107-101963384(-)$1	1	101	114	20.8421

#PSSM
G : 0.52	g : 0.35	c : 0.03	C : 0.03	A : 0.01	u : 0.01	U : 0.01	
G : 0.47	g : 0.35	C : 0.05	c : 0.05	U : 0.03	A : 0.03	
C : 0.43	c : 0.36	U : 0.07	A : 0.05	a : 0.03	G : 0.01	g : 0.01	
G : 0.52	g : 0.29	c : 0.07	a : 0.03	u : 0.03	C : 0.01	A : 0.01	
G : 0.43	g : 0.36	C : 0.08	c : 0.07	A : 0.03	
G : 0.49	g : 0.40	C : 0.03	c : 0.03	A : 0.01	U : 0.01	
G : 0.50	g : 0.40	U : 0.03	u : 0.03	C : 0.01	
G : 0.56	g : 0.33	c : 0.05	A : 0.03	C : 0.01	
C : 0.50	c : 0.33	A : 0.08	g : 0.05	U : 0.01	
G : 0.54	g : 0.33	C : 0.03	c : 0.03	A : 0.03	U : 0.01	
G : 0.54	g : 0.35	A : 0.05	u : 0.01	C : 0.01	U : 0.01	
G : 0.56	g : 0.33	A : 0.03	a : 0.01	c : 0.01	C : 0.01	U : 0.01	
G : 0.42	g : 0.22	A : 0.10	c : 0.08	C : 0.07	a : 0.03	U : 0.03	u : 0.01	

#score	1233.5263157894735
#seq	57
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_UTR_m1_run1.nuc.txt

#NT
gggagcggagggggagcggaggagga	chr11:18034145-18034393(-)$1	248	32	58	30.5000
GGAGGAAGGGGGUGGGGGAAGGAAGU	chr14:54421081-54421331(-)$1	250	44	70	27.0000
ggaggaggaggCUGAGAGAGGGAGGG	chr17:75316236-75316506(+)$1	270	69	95	38.0000
gaaggaggagcuggaggagggcaggg	chr6:86352557-86352819(-)$1	262	15	41	28.0000
GGGGGCCGAGACCUGGUGGGGGAGGG	chr17:41622796-41623050(+)$1	254	228	254	29.0000
GGAGGCGGACCUUGAGGGAGAGUAGG	chr17:75372093-75372353(+)$1	260	82	108	27.0000
GGAGGCAGGGCUGGAGGGUGGAGGGA	chr7:1577319-1577596(+)$1	277	70	96	27.0000
ggaggcgguggguggugggcggaggc	chr2:200323329-200323580(-)$1	251	71	97	29.5000
GCGGGCCGCGGCGCUGAGGGGGAGGG	chr5:138629682-138629995(+)$1	313	182	208	26.5000

#otherMatches

#Struct PSSM
IIIddddrrrrrrrrrdddd:::::G	chr8:17658249-17658521(-)$1	272	75	101	27.5000
]bb22aFFFFFFLLLFFFFFF{CCC{	chr11:18034145-18034393(-)$1	248	32	58	30.5000
eeee333a]a]dddd]ccc::::::E	chr14:54421081-54421331(-)$1	250	44	70	27.0000
BB{BB{BB{FFFFFFKKA{GGGGGGG	chr17:75316236-75316506(+)$1	270	69	95	38.0000
FFMMMMAKKCCC{AKKA:::bb####	chr6:86352557-86352819(-)$1	262	15	41	28.0000
nffffff::::cccqqqqqqqqccc:	chr17:41622796-41623050(+)$1	254	228	254	29.0000
bb]ccc22gggggggeeeee:ddddq	chr17:75372093-75372353(+)$1	260	82	108	27.0000
HHHH{CCC{BBCCCKKEEEEE::DDD	chr7:1577319-1577596(+)$1	277	70	96	27.0000
"""ccc!!bb"""a[bb[ffffffbb	chr2:200323329-200323580(-)$1	251	71	97	29.5000
}HHHHHHHHYYDDDD::ccc[cccpp	chr5:138629682-138629995(+)$1	313	182	208	26.5000

#DB
(((((((.........)))).....(	chr8:17658249-17658521(-)$1	1	75	101	27.5000
.))..)((((((...((((((.(((.	chr11:18034145-18034393(-)$1	1	32	58	30.5000
))))...).).)))).)))......(	chr14:54421081-54421331(-)$1	1	44	70	27.0000
((.((.((.((((((..(.(((((((	chr17:75316236-75316506(+)$1	1	69	95	38.0000
((....(..(((.(..(...((....	chr6:86352557-86352819(-)$1	1	15	41	28.0000
.))))))....(((........))).	chr17:41622796-41623050(+)$1	1	228	254	29.0000
)).)))..)))))))))))).((((.	chr17:75372093-75372353(+)$1	1	82	108	27.0000
((((.(((.(((((..(((((..(((	chr7:1577319-1577596(+)$1	1	70	96	27.0000
...(((..((...(.((.((((((((	chr2:200323329-200323580(-)$1	1	71	97	29.5000
.))))))))..))))..(((.(((..	chr5:138629682-138629995(+)$1	1	182	208	26.5000

#PSSM
G : 0.60	g : 0.40	
G : 0.50	g : 0.30	a : 0.10	C : 0.10	
G : 0.30	A : 0.30	a : 0.30	g : 0.10	
G : 0.60	g : 0.30	a : 0.10	
G : 0.60	g : 0.40	
C : 0.50	c : 0.20	a : 0.20	A : 0.10	
g : 0.40	C : 0.30	A : 0.20	G : 0.10	
G : 0.60	g : 0.40	
A : 0.30	a : 0.30	G : 0.20	u : 0.10	C : 0.10	
g : 0.40	G : 0.40	A : 0.10	C : 0.10	
G : 0.30	g : 0.30	C : 0.20	c : 0.10	A : 0.10	
C : 0.40	g : 0.20	U : 0.20	G : 0.10	u : 0.10	
U : 0.40	g : 0.20	G : 0.20	C : 0.10	u : 0.10	
G : 0.50	g : 0.30	U : 0.10	C : 0.10	
A : 0.40	a : 0.20	G : 0.20	g : 0.10	U : 0.10	
G : 0.70	g : 0.20	u : 0.10	
G : 0.40	A : 0.20	g : 0.20	c : 0.10	U : 0.10	
G : 0.70	g : 0.20	a : 0.10	
g : 0.30	A : 0.30	G : 0.20	C : 0.10	U : 0.10	
G : 0.50	U : 0.10	a : 0.10	A : 0.10	g : 0.10	c : 0.10	
G : 0.50	g : 0.30	A : 0.20	
G : 0.50	A : 0.20	g : 0.20	c : 0.10	
A : 0.50	a : 0.30	U : 0.10	G : 0.10	
G : 0.50	g : 0.30	A : 0.20	
G : 0.70	g : 0.30	
G : 0.50	a : 0.10	U : 0.10	g : 0.10	A : 0.10	c : 0.10	

#score	290.0000000000002
#seq	10
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_transcript_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
eeeee[ddddxxxxxxxxxxxxxxxdddd333eeeeea22eeeeeggggggglllggggggg::::::GGGGGGG:::ggggggg[cccpppppppccc22ggggggg::HHHHHHHH::eeeee"""bbqqqqqqqqbb4444eeeeebbmmmmbb:ggggggg[eeeee[bbqqqqqqqqbb]eeeee]ggggggg::::::::::HHHHHHHH:::::::DDDDKKJJJJJJJJJJJ{DDDDhhhhhhhhlllhhhhhhhh:::ccclllccc::DDDD?????JJJJJJJJJJJ@@@@@@@@@@@@@DDDD}GGGGGGG~~~~CCCCCC	chr7:5780788-5781184(-)$1	396	36	369	999.0000

#DB
(((((.((((...............))))...))))))..)))))(((((((...)))))))......(((((((...(((((((.(((.......)))..)))))))..((((((((..(((((...((........))....)))))((....)).(((((((.(((((.((........)).))))).)))))))..........)))))))).......((((..(((((((((((.((((((((((((...))))))))...(((...)))..)))).....))))))))))).............)))).)))))))....))))))	chr7:5780788-5781184(-)$1	1	36	369	999.0000

#PSSM
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	

#score	999.0
#seq	1
#width	333
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_transcript_m2_run2.nuc.txt

#NT
GGGAGG	chr22:49847310-49847571(-)$1	261	104	110	18.0000
GGGAGG	chr19:42398119-42398386(+)$1	267	236	242	18.0000
GGGAGG	chr19:1410897-1411153(+)$1	256	235	241	18.0000
GGGAGG	chrX:133930794-133931064(-)$1	270	31	37	18.0000
GGGAGG	chr19:10488901-10489155(-)$1	254	147	153	18.0000
gggagg	chr1:54412707-54412986(+)$1	279	100	106	18.0000
GGGAGG	chr19:12832698-12832963(-)$1	265	63	69	18.0000
GGGAGG	chr17:7835651-7835933(+)$1	282	121	127	18.0000
GGGAGG	chr22:19929582-19929830(+)$1	248	218	224	18.0000
gggagg	chr21:47565489-47565739(-)$1	250	98	104	18.0000
GGGAGG	chr9:126030252-126030472(-)$1	220	86	92	18.0000
GGGAGG	chr5:137088270-137088509(-)$1	239	0	6	18.0000
GGGAGG	chr8:142432527-142432831(+)$1	304	141	147	18.0000
GGGAGG	chr1:113616509-113616783(+)$1	274	14	20	18.0000
GGGAGG	chr11:63953997-63954270(+)$1	273	76	82	18.0000
GGGAGG	chr22:49981130-49981363(-)$1	233	185	191	18.0000
GGGAGG	chr16:447295-447544(+)$1	249	54	60	18.0000
GGGAGG	chr17:31255221-31255529(+)$1	308	123	129	18.0000
GGGAGG	chr6:13574894-13575187(+)$1	293	124	130	18.0000
gggagg	chr7:139257334-139257614(-)$1	280	7	13	18.0000
GGGAGG	chr11:291726-291959(+)$1	233	30	36	18.0000
GGGAGG	chr22:49885190-49885437(-)$1	247	5	11	18.0000
gggagg	chr7:127671019-127671288(+)$1	269	81	87	18.0000
GGGAGG	chr19:55857145-55857422(+)$1	277	214	220	18.0000
GGGAGG	chr21:45739330-45739628(+)$1	298	95	101	18.0000
gggagg	chr1:180008170-180008427(+)$1	257	149	155	18.0000
GGGAGG	chr9:123631045-123631351(-)$1	306	261	267	18.0000
GGGAGG	chr16:88562671-88562922(+)$1	251	82	88	18.0000
GGGAGG	chr6:32157582-32157845(-)$1	263	108	114	18.0000
GGGAGG	chr11:70244925-70245178(+)$1	253	119	125	18.0000
GGGAGG	chr12:96793149-96793415(-)$1	266	84	90	18.0000
gggagg	chr19:47285397-47285652(-)$1	255	243	249	18.0000
GGGAGG	chr1:54868020-54868287(-)$1	267	36	42	18.0000
GGGAGG	chr16:23993924-23994158(+)$1	234	157	163	18.0000
GGGAGG	chr19:1046479-1046753(+)$1	274	70	76	18.0000
GGGAGG	chr19:1171998-1172231(-)$1	233	83	89	18.0000
GGGAGG	chr19:50359551-50359833(+)$1	282	97	103	18.0000
GGGAGG	chr19:1251002-1251266(+)$1	264	114	120	18.0000
gggagg	chr19:49964069-49964374(+)$1	305	209	215	18.0000
gggagg	chr19:517153-517416(+)$1	263	61	67	18.0000
GGGAGG	chr1:202129627-202129908(-)$1	281	43	49	18.0000
GGGAGG	chr19:1410758-1411041(+)$1	283	115	121	18.0000
GGGAGG	chr8:144585514-144585803(-)$1	289	64	70	18.0000
GGGAGG	chr22:50041184-50041471(-)$1	287	129	135	18.0000
GGGAGG	chr1:16302132-16302438(-)$1	306	60	66	18.0000
GGGAGG	chr9:96426321-96426626(+)$1	305	24	30	18.0000
GGGAGG	chr17:17726841-17727085(-)$1	244	178	184	18.0000
GGGAGG	chr4:83349987-83350234(-)$1	247	103	109	18.0000
GGGAGG	chr10:21823275-21823535(+)$1	260	49	55	18.0000
gggagg	chr8:142427138-142427424(+)$1	286	85	91	18.0000
GGGAGG	chr19:918907-919166(+)$1	259	30	36	18.0000
gggagg	chr11:67140313-67140579(-)$1	266	3	9	18.0000
GGGAGG	chr17:29150921-29151177(-)$1	256	6	12	18.0000
GGGAGG	chr19:41119576-41119854(+)$1	278	110	116	18.0000
GGGAGG	chr20:62310407-62310677(+)$1	270	30	36	18.0000
GGGAGG	chr1:54841620-54841899(-)$1	279	87	93	18.0000
GGGAGG	chr1:227166607-227166880(+)$1	273	201	207	18.0000
GGGAGG	chr7:150780226-150780515(-)$1	289	93	99	18.0000
GGGAGG	chr17:75464338-75464637(+)$1	299	125	131	18.0000
GGGAGG	chr10:71929911-71930165(-)$1	254	18	24	18.0000

#otherMatches

#Struct PSSM
DDEEEE	chr16:89555647-89555919(-)$1	272	87	93	18.0000
ggxxxx	chr22:49847310-49847571(-)$1	261	104	110	18.0000
GGGGGG	chr19:42398119-42398386(+)$1	267	236	242	18.0000
E}IIII	chr19:1410897-1411153(+)$1	256	235	241	18.0000
fff22e	chrX:133930794-133931064(-)$1	270	31	37	18.0000
ddd[ee	chr19:10488901-10489155(-)$1	254	147	153	18.0000
ff!!cc	chr1:54412707-54412986(+)$1	279	100	106	18.0000
gg]eee	chr19:12832698-12832963(-)$1	265	63	69	18.0000
]hhhhh	chr17:7835651-7835933(+)$1	282	121	127	18.0000
eedddd	chr22:19929582-19929830(+)$1	248	218	224	18.0000
pppppp	chr21:47565489-47565739(-)$1	250	98	104	18.0000
c]ccci	chr9:126030252-126030472(-)$1	220	86	92	18.0000
:::::F	chr5:137088270-137088509(-)$1	239	0	6	18.0000
==]aDD	chr8:142432527-142432831(+)$1	304	141	147	18.0000
pphhhh	chr1:113616509-113616783(+)$1	274	14	20	18.0000
tttttc	chr11:63953997-63954270(+)$1	273	76	82	18.0000
mmmbb2	chr22:49981130-49981363(-)$1	233	185	191	18.0000
GGG:::	chr16:447295-447544(+)$1	249	54	60	18.0000
bb]bb]	chr17:31255221-31255529(+)$1	308	123	129	18.0000
HHH{BB	chr6:13574894-13575187(+)$1	293	124	130	18.0000
e[alll	chr7:139257334-139257614(-)$1	280	7	13	18.0000
rrrrdd	chr11:291726-291959(+)$1	233	30	36	18.0000
ECCC{B	chr22:49885190-49885437(-)$1	247	5	11	18.0000
DDDD:C	chr7:127671019-127671288(+)$1	269	81	87	18.0000
d]a]a]	chr19:55857145-55857422(+)$1	277	214	220	18.0000
!a[ccc	chr21:45739330-45739628(+)$1	298	95	101	18.0000
hh!!dd	chr1:180008170-180008427(+)$1	257	149	155	18.0000
______	chr9:123631045-123631351(-)$1	306	261	267	18.0000
ddd[dd	chr16:88562671-88562922(+)$1	251	82	88	18.0000
DDD{GG	chr6:32157582-32157845(-)$1	263	108	114	18.0000
55555a	chr11:70244925-70245178(+)$1	253	119	125	18.0000
d]gggg	chr12:96793149-96793415(-)$1	266	84	90	18.0000
nnnnnf	chr19:47285397-47285652(-)$1	255	243	249	18.0000
CLLLHH	chr1:54868020-54868287(-)$1	267	36	42	18.0000
bb]a33	chr16:23993924-23994158(+)$1	234	157	163	18.0000
ppppa]	chr19:1046479-1046753(+)$1	274	70	76	18.0000
eeeeem	chr19:1171998-1172231(-)$1	233	83	89	18.0000
e$$$$$	chr19:50359551-50359833(+)$1	282	97	103	18.0000
cccwww	chr19:1251002-1251266(+)$1	264	114	120	18.0000
DD}DDD	chr19:49964069-49964374(+)$1	305	209	215	18.0000
777777	chr19:517153-517416(+)$1	263	61	67	18.0000
[bb!!c	chr1:202129627-202129908(-)$1	281	43	49	18.0000
ff!!bb	chr19:1410758-1411041(+)$1	283	115	121	18.0000
b:::::	chr8:144585514-144585803(-)$1	289	64	70	18.0000
fffffb	chr22:50041184-50041471(-)$1	287	129	135	18.0000
{BB{CC	chr1:16302132-16302438(-)$1	306	60	66	18.0000
ccc:HH	chr9:96426321-96426626(+)$1	305	24	30	18.0000
gcccee	chr17:17726841-17727085(-)$1	244	178	184	18.0000
ffffff	chr4:83349987-83350234(-)$1	247	103	109	18.0000
iiiiii	chr10:21823275-21823535(+)$1	260	49	55	18.0000
CCC{DD	chr8:142427138-142427424(+)$1	286	85	91	18.0000
4444dd	chr19:918907-919166(+)$1	259	30	36	18.0000
::dddd	chr11:67140313-67140579(-)$1	266	3	9	18.0000
###ccc	chr17:29150921-29151177(-)$1	256	6	12	18.0000
88888d	chr19:41119576-41119854(+)$1	278	110	116	18.0000
:dddd[	chr20:62310407-62310677(+)$1	270	30	36	18.0000
DDDDBB	chr1:54841620-54841899(-)$1	279	87	93	18.0000
EEE:ff	chr1:227166607-227166880(+)$1	273	201	207	18.0000
fff]a]	chr7:150780226-150780515(-)$1	289	93	99	18.0000
[bb###	chr17:75464338-75464637(+)$1	299	125	131	18.0000
dDDDDA	chr10:71929911-71930165(-)$1	254	18	24	18.0000

#DB
((((((	chr16:89555647-89555919(-)$1	1	87	93	18.0000
((....	chr22:49847310-49847571(-)$1	1	104	110	18.0000
))))))	chr19:42398119-42398386(+)$1	1	236	242	18.0000
).))))	chr19:1410897-1411153(+)$1	1	235	241	18.0000
)))..)	chrX:133930794-133931064(-)$1	1	31	37	18.0000
(((.((	chr19:10488901-10489155(-)$1	1	147	153	18.0000
((..((	chr1:54412707-54412986(+)$1	1	100	106	18.0000
)).)))	chr19:12832698-12832963(-)$1	1	63	69	18.0000
.)))))	chr17:7835651-7835933(+)$1	1	121	127	18.0000
))))))	chr22:19929582-19929830(+)$1	1	218	224	18.0000
......	chr21:47565489-47565739(-)$1	1	98	104	18.0000
).)))(	chr9:126030252-126030472(-)$1	1	86	92	18.0000
.....(	chr5:137088270-137088509(-)$1	1	0	6	18.0000
)).)))	chr8:142432527-142432831(+)$1	1	141	147	18.0000
..))))	chr1:113616509-113616783(+)$1	1	14	20	18.0000
.....)	chr11:63953997-63954270(+)$1	1	76	82	18.0000
...)).	chr22:49981130-49981363(-)$1	1	185	191	18.0000
(((...	chr16:447295-447544(+)$1	1	54	60	18.0000
)).)).	chr17:31255221-31255529(+)$1	1	123	129	18.0000
(((.((	chr6:13574894-13575187(+)$1	1	124	130	18.0000
(.(...	chr7:139257334-139257614(-)$1	1	7	13	18.0000
....))	chr11:291726-291959(+)$1	1	30	36	18.0000
((((.(	chr22:49885190-49885437(-)$1	1	5	11	18.0000
((((.(	chr7:127671019-127671288(+)$1	1	81	87	18.0000
).).).	chr19:55857145-55857422(+)$1	1	214	220	18.0000
.(.(((	chr21:45739330-45739628(+)$1	1	95	101	18.0000
((..((	chr1:180008170-180008427(+)$1	1	149	155	18.0000
......	chr9:123631045-123631351(-)$1	1	261	267	18.0000
(((.((	chr16:88562671-88562922(+)$1	1	82	88	18.0000
(((.((	chr6:32157582-32157845(-)$1	1	108	114	18.0000
.....)	chr11:70244925-70245178(+)$1	1	119	125	18.0000
).))))	chr12:96793149-96793415(-)$1	1	84	90	18.0000
.....)	chr19:47285397-47285652(-)$1	1	243	249	18.0000
(...((	chr1:54868020-54868287(-)$1	1	36	42	18.0000
)).)..	chr16:23993924-23994158(+)$1	1	157	163	18.0000
....).	chr19:1046479-1046753(+)$1	1	70	76	18.0000
(((((.	chr19:1171998-1172231(-)$1	1	83	89	18.0000
(.....	chr19:50359551-50359833(+)$1	1	97	103	18.0000
(((...	chr19:1251002-1251266(+)$1	1	114	120	18.0000
)).)))	chr19:49964069-49964374(+)$1	1	209	215	18.0000
......	chr19:517153-517416(+)$1	1	61	67	18.0000
.((..(	chr1:202129627-202129908(-)$1	1	43	49	18.0000
((..((	chr19:1410758-1411041(+)$1	1	115	121	18.0000
).....	chr8:144585514-144585803(-)$1	1	64	70	18.0000
((((((	chr22:50041184-50041471(-)$1	1	129	135	18.0000
.((.((	chr1:16302132-16302438(-)$1	1	60	66	18.0000
))).((	chr9:96426321-96426626(+)$1	1	24	30	18.0000
))))((	chr17:17726841-17727085(-)$1	1	178	184	18.0000
((((((	chr4:83349987-83350234(-)$1	1	103	109	18.0000
))))))	chr10:21823275-21823535(+)$1	1	49	55	18.0000
(((.((	chr8:142427138-142427424(+)$1	1	85	91	18.0000
....))	chr19:918907-919166(+)$1	1	30	36	18.0000
..((((	chr11:67140313-67140579(-)$1	1	3	9	18.0000
...(((	chr17:29150921-29151177(-)$1	1	6	12	18.0000
.....)	chr19:41119576-41119854(+)$1	1	110	116	18.0000
.((((.	chr20:62310407-62310677(+)$1	1	30	36	18.0000
((((((	chr1:54841620-54841899(-)$1	1	87	93	18.0000
))).((	chr1:227166607-227166880(+)$1	1	201	207	18.0000
))).).	chr7:150780226-150780515(-)$1	1	93	99	18.0000
.((...	chr17:75464338-75464637(+)$1	1	125	131	18.0000
)(((((	chr10:71929911-71930165(-)$1	1	18	24	18.0000

#PSSM
G : 0.83	g : 0.16	
G : 0.83	g : 0.16	
G : 0.83	g : 0.16	
A : 0.83	a : 0.16	
G : 0.83	g : 0.16	
G : 0.83	g : 0.16	

#score	1098.0000000000002
#seq	61
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_CDS_m1_run1.nuc.txt

#NT
UUUUUUAUUCUCUUCCU	chr1:154143862-154144135(-)$1	273	114	131	22.2745
UGCCUCUUUCUCUUUUU	chr19:45912065-45912318(-)$1	253	214	231	25.8039
UUCCucuuuuucuuucu	chr5:112227540-112227837(-)$1	297	84	101	21.8823
uucuucuucuucuucuu	chr19:45912355-45912599(-)$1	244	90	107	29.2352
uucuuccuccuccucuu	chr16:2819022-2819287(+)$1	265	119	136	25.7058
UCUUGCUUUCUUUUCUU	chr4:77068674-77068955(-)$1	281	93	110	23.2549
uuuuacuuuuucuccuu	chr16:74339386-74339694(-)$1	308	61	78	21.4901
uucuuccuccucuucuu	chrX:21863302-21863595(+)$1	293	100	117	29.0392
cucuguuuucucuuuuu	chr19:38948391-38948797(+)$1	406	116	133	20.6078
UCCAGAUUUCUCUUCUU	chr1:109816492-109816802(+)$1	310	146	163	21.1960
CUCUUCCUCCUCUUCCU	chr8:145012459-145012759(-)$1	300	131	148	22.4705
UUCUUUUCUCUCAUUUU	chr1:144871732-144872025(-)$1	293	83	100	20.9019
UUUCUCUCUCUCUUCCU	chr8:62588758-62589042(-)$1	284	133	150	22.7647
uucuucucuuccuccuu	chr22:40749192-40749456(+)$1	264	101	118	20.2156
uucuuccuccuccucuu	chr16:2819087-2819355(+)$1	268	54	71	25.7058
CCCUUCUUUCUCCCCUU	chr6:30673623-30673868(-)$1	245	102	119	22.7647
UCCCUCUUUCUGUUCUC	chr1:44442979-44443300(+)$1	321	164	181	21.0000
uuuuucuuccucugcuu	chr1:10342218-10342485(+)$1	267	95	112	26.4901
uucuuuucucucucauu	chr9:98236302-98236610(-)$1	308	149	166	20.9019
uccuucuuucauuucuu	chr5:176917484-176917744(-)$1	260	44	61	25.2156
UGCCUCUUUCUCUUUUU	chr19:45911951-45912223(-)$1	272	119	136	25.8039
UCUUUCUUCGUCUUCUU	chr19:45912238-45912487(-)$1	249	92	109	25.3137
gucuucuuccucuucuu	chr17:7369630-7369951(-)$1	321	106	123	28.5490
cuuuucucucucuuauu	chr19:42839817-42840204(+)$1	387	64	81	21.9803
UUCAUUUCUCUCUUCCU	chr13:25008728-25008988(-)$1	260	19	36	21.1960
UUCUUCUUUCACUUCUU	chr9:95277187-95277464(+)$1	277	113	130	30.5098
UUCUUCCUUGUCUCCUU	chr17:38990865-38991169(+)$1	304	189	206	24.1372
UGCUUCUUCCUCUUCUU	chr19:45912464-45912725(-)$1	261	102	119	30.2156
uucuucuuucucuucuu	chr7:141464567-141464841(+)$1	274	105	122	34.7254
cucuucuuucucuuguc	chrX:70352554-70352802(+)$1	248	118	135	23.0588
uccuuuucucucuucuu	chr1:150814834-150815157(-)$1	323	67	84	26.3921
uucuucuuccuccucuu	chr1:14107344-14107583(+)$1	239	98	115	29.2352
uuucucuugcccuucuu	chr17:7813591-7813856(+)$1	265	116	133	21.3921
uuuuucugucucuucuc	chr20:30155749-30155997(+)$1	248	100	117	24.3333
uccuucuuucuucuccu	chr2:70129351-70129626(+)$1	275	34	51	23.1568
uccuuuuuucuuuccuu	chr22:37420871-37421146(+)$1	275	95	112	22.6666
GGCUUCUUCCUCUUCUU	chr19:45911853-45912086(-)$1	233	93	110	26.1960
UUUUUCUUCUUCUUCUU	chr19:45911721-45911966(-)$1	245	90	107	27.1764
UCCUUCUUUUACUUCUU	chr13:39587099-39587393(-)$1	294	95	112	25.6078
UCUUUUCUUCUCUUCUU	chr16:30733716-30734005(+)$1	289	83	100	24.2352
UAUUUCUUUCUCUUGUU	chr19:49840793-49841087(-)$1	294	115	132	26.1960
uuuuucuuuauuuucuu	chr2:99197909-99198154(+)$1	245	63	80	25.2156
uccuucuuccuccuccu	chr2:70129426-70129721(+)$1	295	2	19	24.7254
uucuucuuccuccucuu	chr1:14107383-14107661(+)$1	278	59	76	29.2352
uccuuccuucucuuucu	chr19:13003006-13003252(+)$1	246	66	83	23.6470
CCUUUCUUUAUCUCCUU	chr12:57115115-57115364(-)$1	249	90	107	20.3137
uucuucuuugucuuuuu	chr16:15696285-15696557(-)$1	272	93	110	28.0588
uucugcuuucucuucau	chr5:141046107-141046470(-)$1	363	140	157	26.7843
UGCUUCUGUCUUCUCUU	chr1:11888344-11888648(+)$1	304	88	105	21.3921
UGCAUCUUUCUCUACCU	chr1:176137729-176138051(-)$1	322	99	116	21.5882

#otherMatches

#Struct PSSM
MMMMCCC::::::::::	chr12:42623919-42624162(-)$1	243	45	62	26.6862
HHFFFFFFLLLBB{EEE	chr1:154143862-154144135(-)$1	273	114	131	22.2745
#cccvvvvvvvvvvvvv	chr19:45912065-45912318(-)$1	253	214	231	25.8039
^^^^^^^^^^^^^^^^^	chr5:112227540-112227837(-)$1	297	84	101	21.8823
:::::::::::::::::	chr19:45912355-45912599(-)$1	244	90	107	29.2352
GGZZZAYYFFFFFF:::	chr16:2819022-2819287(+)$1	265	119	136	25.7058
:::::::::::::::::	chr4:77068674-77068955(-)$1	281	93	110	23.2549
:::::::::::::::::	chr16:74339386-74339694(-)$1	308	61	78	21.4901
:::::::::::::::::	chrX:21863302-21863595(+)$1	293	100	117	29.0392
:::::::::::::::::	chr19:38948391-38948797(+)$1	406	116	133	20.6078
:::cccpppppppccc:	chr1:109816492-109816802(+)$1	310	146	163	21.1960
%%%%%ccceeeee[ccc	chr8:145012459-145012759(-)$1	300	131	148	22.4705
:::::::::a[dddd[b	chr1:144871732-144872025(-)$1	293	83	100	20.9019
++++++++bb####ccc	chr8:62588758-62589042(-)$1	284	133	150	22.7647
:::::::EEEEE{CCC{	chr22:40749192-40749456(+)$1	264	101	118	20.2156
:::::::::::::::::	chr16:2819087-2819355(+)$1	268	54	71	25.7058
:::dddd!!eeeee[dd	chr6:30673623-30673868(-)$1	245	102	119	22.7647
:::::::::::::::::	chr1:44442979-44443300(+)$1	321	164	181	21.0000
:::::::::::::::::	chr1:10342218-10342485(+)$1	267	95	112	26.4901
:::::::::::::::::	chr9:98236302-98236610(-)$1	308	149	166	20.9019
:::::::::::::::::	chr5:176917484-176917744(-)$1	260	44	61	25.2156
#cccvvvvvvvvvvvvv	chr19:45911951-45912223(-)$1	272	119	136	25.8039
:::::::::::aqqqqq	chr19:45912238-45912487(-)$1	249	92	109	25.3137
:::::::::::::::::	chr17:7369630-7369951(-)$1	321	106	123	28.5490
:::::::::::::::::	chr19:42839817-42840204(+)$1	387	64	81	21.9803
ggDDDDNNNNNFFFFFF	chr13:25008728-25008988(-)$1	260	19	36	21.1960
+++++++++ffffff""	chr9:95277187-95277464(+)$1	277	113	130	30.5098
qqqqeeeee]dddd]ff	chr17:38990865-38991169(+)$1	304	189	206	24.1372
ffffff>>>>>>>>>>>	chr19:45912464-45912725(-)$1	261	102	119	30.2156
::::::::CCCDDDDMM	chr7:141464567-141464841(+)$1	274	105	122	34.7254
:::::::ccchhhhhhh	chrX:70352554-70352802(+)$1	248	118	135	23.0588
:::::::::::::::::	chr1:150814834-150815157(-)$1	323	67	84	26.3921
:::::::::::::::::	chr1:14107344-14107583(+)$1	239	98	115	29.2352
:ffffff[bb!!ccc$$	chr17:7813591-7813856(+)$1	265	116	133	21.3921
:::::FFFFFF::::::	chr20:30155749-30155997(+)$1	248	100	117	24.3333
:::::::::::::::::	chr2:70129351-70129626(+)$1	275	34	51	23.1568
:::::::::::::::::	chr22:37420871-37421146(+)$1	275	95	112	22.6666
====:::::::::::::	chr19:45911853-45912086(-)$1	233	93	110	26.1960
:::::::::::::::::	chr19:45911721-45911966(-)$1	245	90	107	27.1764
:::::::::::::::::	chr13:39587099-39587393(-)$1	294	95	112	25.6078
444==========dddd	chr16:30733716-30734005(+)$1	289	83	100	24.2352
xxxxxxxxxxxxxffff	chr19:49840793-49841087(-)$1	294	115	132	26.1960
^^^^^^^^^^^^^^^^^	chr2:99197909-99198154(+)$1	245	63	80	25.2156
:::::::::::::::::	chr2:70129426-70129721(+)$1	295	2	19	24.7254
::::::::::DDDD{DD	chr1:14107383-14107661(+)$1	278	59	76	29.2352
:::::::::::::::::	chr19:13003006-13003252(+)$1	246	66	83	23.6470
^^^^^^^^^^^^^^^^^	chr12:57115115-57115364(-)$1	249	90	107	20.3137
:::::::::::::::::	chr16:15696285-15696557(-)$1	272	93	110	28.0588
rrrrbb:::::::::::	chr5:141046107-141046470(-)$1	363	140	157	26.7843
)bbmmmmbb88888888	chr1:11888344-11888648(+)$1	304	88	105	21.3921
FFFF::::::::EEEEE	chr1:176137729-176138051(-)$1	322	99	116	21.5882

#DB
....(((..........	chr12:42623919-42624162(-)$1	1	45	62	26.6862
))((((((...((.(((	chr1:154143862-154144135(-)$1	1	114	131	22.2745
.(((.............	chr19:45912065-45912318(-)$1	1	214	231	25.8039
.................	chr5:112227540-112227837(-)$1	1	84	101	21.8823
.................	chr19:45912355-45912599(-)$1	1	90	107	29.2352
))...)..))))))...	chr16:2819022-2819287(+)$1	1	119	136	25.7058
.................	chr4:77068674-77068955(-)$1	1	93	110	23.2549
.................	chr16:74339386-74339694(-)$1	1	61	78	21.4901
.................	chrX:21863302-21863595(+)$1	1	100	117	29.0392
.................	chr19:38948391-38948797(+)$1	1	116	133	20.6078
...(((.......))).	chr1:109816492-109816802(+)$1	1	146	163	21.1960
.....((((((((.(((	chr8:145012459-145012759(-)$1	1	131	148	22.4705
.........(.((((.(	chr1:144871732-144872025(-)$1	1	83	100	20.9019
........((....(((	chr8:62588758-62589042(-)$1	1	133	150	22.7647
.......(((((.(((.	chr22:40749192-40749456(+)$1	1	101	118	20.2156
.................	chr16:2819087-2819355(+)$1	1	54	71	25.7058
...((((..(((((.((	chr6:30673623-30673868(-)$1	1	102	119	22.7647
.................	chr1:44442979-44443300(+)$1	1	164	181	21.0000
.................	chr1:10342218-10342485(+)$1	1	95	112	26.4901
.................	chr9:98236302-98236610(-)$1	1	149	166	20.9019
.................	chr5:176917484-176917744(-)$1	1	44	61	25.2156
.(((.............	chr19:45911951-45912223(-)$1	1	119	136	25.8039
...........(.....	chr19:45912238-45912487(-)$1	1	92	109	25.3137
.................	chr17:7369630-7369951(-)$1	1	106	123	28.5490
.................	chr19:42839817-42840204(+)$1	1	64	81	21.9803
))((((.....((((((	chr13:25008728-25008988(-)$1	1	19	36	21.1960
.........((((((..	chr9:95277187-95277464(+)$1	1	113	130	30.5098
....))))).)))).))	chr17:38990865-38991169(+)$1	1	189	206	24.1372
))))))...........	chr19:45912464-45912725(-)$1	1	102	119	30.2156
........(((((((..	chr7:141464567-141464841(+)$1	1	105	122	34.7254
.......((((((((((	chrX:70352554-70352802(+)$1	1	118	135	23.0588
.................	chr1:150814834-150815157(-)$1	1	67	84	26.3921
.................	chr1:14107344-14107583(+)$1	1	98	115	29.2352
.((((((.((..(((..	chr17:7813591-7813856(+)$1	1	116	133	21.3921
.....))))))......	chr20:30155749-30155997(+)$1	1	100	117	24.3333
.................	chr2:70129351-70129626(+)$1	1	34	51	23.1568
.................	chr22:37420871-37421146(+)$1	1	95	112	22.6666
)))).............	chr19:45911853-45912086(-)$1	1	93	110	26.1960
.................	chr19:45911721-45911966(-)$1	1	90	107	27.1764
.................	chr13:39587099-39587393(-)$1	1	95	112	25.6078
...))))))))))))))	chr16:30733716-30734005(+)$1	1	83	100	24.2352
.............))))	chr19:49840793-49841087(-)$1	1	115	132	26.1960
.................	chr2:99197909-99198154(+)$1	1	63	80	25.2156
.................	chr2:70129426-70129721(+)$1	1	2	19	24.7254
..........((((.((	chr1:14107383-14107661(+)$1	1	59	76	29.2352
.................	chr19:13003006-13003252(+)$1	1	66	83	23.6470
.................	chr12:57115115-57115364(-)$1	1	90	107	20.3137
.................	chr16:15696285-15696557(-)$1	1	93	110	28.0588
....))...........	chr5:141046107-141046470(-)$1	1	140	157	26.7843
.((....))........	chr1:11888344-11888648(+)$1	1	88	105	21.3921
((((........(((((	chr1:176137729-176138051(-)$1	1	99	116	21.5882

#PSSM
u : 0.45	U : 0.39	c : 0.05	C : 0.05	g : 0.01	G : 0.01	
u : 0.41	U : 0.17	C : 0.15	G : 0.11	c : 0.11	A : 0.01	
c : 0.39	C : 0.31	U : 0.15	u : 0.13	
u : 0.50	U : 0.31	C : 0.09	A : 0.05	c : 0.01	
u : 0.49	U : 0.41	G : 0.03	g : 0.03	a : 0.01	
c : 0.47	C : 0.35	U : 0.07	u : 0.07	A : 0.01	
u : 0.47	U : 0.37	c : 0.07	C : 0.05	A : 0.01	
u : 0.45	U : 0.37	c : 0.07	C : 0.05	g : 0.01	G : 0.01	
u : 0.35	U : 0.35	c : 0.17	C : 0.09	g : 0.01	
c : 0.43	C : 0.35	u : 0.07	G : 0.03	U : 0.03	a : 0.01	A : 0.01	g : 0.01	
u : 0.49	U : 0.41	c : 0.03	A : 0.03	a : 0.01	
c : 0.47	C : 0.39	u : 0.07	U : 0.03	G : 0.01	
u : 0.43	U : 0.39	c : 0.11	C : 0.03	A : 0.01	
u : 0.45	U : 0.37	c : 0.07	C : 0.05	g : 0.01	A : 0.01	
c : 0.39	C : 0.37	u : 0.09	U : 0.05	a : 0.03	g : 0.01	G : 0.01	
u : 0.43	U : 0.35	c : 0.09	C : 0.09	a : 0.01	
u : 0.50	U : 0.43	c : 0.03	C : 0.01	

#score	1258.647058823529
#seq	51
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_transcript_m3_run2.nuc.txt

#NT
UUUUAAA	chr12:53873288-53873546(+)$1	258	28	35	17.7424
UAUUAAA	chr6:163994290-163994502(+)$1	212	7	14	13.4999
uauuaaa	chr12:46766257-46766502(-)$1	245	88	95	13.4999
AUUUAAA	chrX:70764420-70764687(+)$1	267	85	92	13.7272
uuuuaaa	chr3:145787441-145787673(-)$1	232	55	62	17.7424
GUUUAAA	chr6:109688419-109688664(-)$1	245	2	9	13.6515
UUUCAAA	chr6:34256186-34256444(-)$1	258	13	20	13.1969
UUUUAAA	chr17:37687895-37688186(+)$1	291	50	57	17.7424
UUUUCAA	chr7:6501321-6501597(-)$1	276	0	7	13.6515
UUUUAAG	chr5:179156663-179156907(+)$1	244	4	11	13.1969
UUUUGAA	chr5:179157586-179157827(+)$1	241	99	106	13.5757
UUUUAAC	chr7:139824259-139824537(-)$1	278	173	180	13.1969
UUUUUAA	chr7:26232921-26233164(-)$1	243	161	168	13.7272
UUUUAAA	chr1:236139131-236139369(-)$1	238	225	232	17.7424
CUUUAAA	chr4:39500501-39500741(-)$1	240	3	10	13.5757
UUGUAAA	chr20:35412088-35412361(-)$1	273	152	159	13.0454
UUUUAAA	chr5:42800482-42800735(-)$1	253	56	63	17.7424
UAUUAAA	chrX:132699151-132699428(-)$1	277	197	204	13.4999
AUUUAAA	chr20:34327438-34327710(-)$1	272	13	20	13.7272
GUUUAAA	chr1:20978631-20978920(-)$1	289	128	135	13.6515
GUUUAAA	chr6:109688467-109688714(-)$1	247	52	59	13.6515
UUUUAAA	chr4:83346392-83346661(-)$1	269	236	243	17.7424
UUUUACA	chr16:1859014-1859285(-)$1	271	102	109	13.5757
UUUUAAA	chr8:22279765-22280006(+)$1	241	133	140	17.7424
UUUUAGA	chr19:48886155-48886411(-)$1	256	67	74	13.7272
UUUUUAA	chr19:972516-972787(+)$1	271	133	140	13.7272
UUUUAAA	chr16:72819588-72819826(-)$1	238	22	29	17.7424
UAUUAAA	chr14:23239357-23239621(+)$1	264	90	97	13.4999
UUUUAAA	chr7:45932870-45933097(+)$1	227	125	132	17.7424
UUUUGAA	chr11:102269198-102269433(-)$1	235	13	20	13.5757
UUUUAGA	chr5:96369774-96370017(+)$1	243	139	146	13.7272
UUUUUAA	chr11:65270577-65270814(+)$1	237	134	141	13.7272
UUUUAAU	chr13:48835769-48836054(+)$1	285	24	31	13.3484
UUUUAAA	chr7:103113063-103113336(-)$1	273	133	140	17.7424
UUUUAAU	chr12:54678492-54678749(+)$1	257	81	88	13.3484
UUUUAAA	chr11:65269803-65270040(+)$1	237	184	191	17.7424
UUUUAAA	chr2:96850973-96851219(-)$1	246	29	36	17.7424
UUUUAGA	chr12:46756720-46756967(-)$1	247	202	209	13.7272
UUUUAAA	chr2:216225871-216226108(-)$1	237	80	87	17.7424
UUUUAGA	chr6:109688572-109688845(-)$1	273	122	129	13.7272
UUUUAAA	chr12:50158491-50158714(+)$1	223	39	46	17.7424
UUUUCAA	chr2:153513390-153513655(-)$1	265	66	73	13.6515
UUUUAAA	chr3:50036892-50037177(+)$1	285	255	262	17.7424
UUUUAAA	chr17:70120952-70121192(+)$1	240	9	16	17.7424
UUGUAAA	chr6:119500163-119500416(-)$1	253	97	104	13.0454
UUUUCAA	chr1:19453930-19454211(-)$1	281	235	242	13.6515
UUUUAUA	chr11:65272684-65272911(+)$1	227	199	206	13.6515
UUUUACA	chr16:31199225-31199534(+)$1	309	301	308	13.5757
UCUUAAA	chr9:33111089-33111353(-)$1	264	46	53	13.3484
UUUCAAA	chr1:113455371-113455645(-)$1	274	26	33	13.1969
UUUUUAA	chr8:101931286-101931573(-)$1	287	46	53	13.7272
UUUUAAA	chr1:234742451-234742690(-)$1	239	153	160	17.7424
UUUUAUA	chr14:50361276-50361521(+)$1	245	226	233	13.6515
UUUCAAA	chr4:166418916-166419151(+)$1	235	171	178	13.1969
AUUUAAA	chr20:35869811-35870055(+)$1	244	4	11	13.7272
UCUUAAA	chr2:26613074-26613322(+)$1	248	188	195	13.3484
UUUUAAA	chr1:40758932-40759196(+)$1	264	46	53	17.7424
UUUUAAU	chr20:61827320-61827574(-)$1	254	54	61	13.3484
AUUUAAA	chr16:31198077-31198329(+)$1	252	162	169	13.7272
uuuuaaa	chr7:6502276-6502527(-)$1	251	84	91	17.7424
UUUUAAA	chr11:130014314-130014556(+)$1	242	179	186	17.7424
uuuuaaa	chr2:118866094-118866348(+)$1	254	84	91	17.7424
uuuuaua	chr6:132212919-132213165(+)$1	246	143	150	13.6515
UUUUAAA	chr8:98863673-98863924(+)$1	251	148	155	17.7424
UUUUAAA	chr5:42800132-42800364(-)$1	232	49	56	17.7424

#otherMatches

#Struct PSSM
:eeeeeq	chr20:46284436-46284692(+)$1	256	59	66	13.5757
QQQQQQQ	chr12:53873288-53873546(+)$1	258	28	35	17.7424
cc!!ccc	chr6:163994290-163994502(+)$1	212	7	14	13.4999
:::::cc	chr12:46766257-46766502(-)$1	245	88	95	13.4999
ssiiiii	chrX:70764420-70764687(+)$1	267	85	92	13.7272
:gggggg	chr3:145787441-145787673(-)$1	232	55	62	17.7424
BBLLLEE	chr6:109688419-109688664(-)$1	245	2	9	13.6515
QQQFFFF	chr6:34256186-34256444(-)$1	258	13	20	13.1969
::iiiii	chr17:37687895-37688186(+)$1	291	50	57	17.7424
::FFFFF	chr7:6501321-6501597(-)$1	276	0	7	13.6515
:::::DD	chr5:179156663-179156907(+)$1	244	4	11	13.1969
nnggggg	chr5:179157586-179157827(+)$1	241	99	106	13.5757
e]dddd:	chr7:139824259-139824537(-)$1	278	173	180	13.1969
cmmmmcc	chr7:26232921-26233164(-)$1	243	161	168	13.7272
fflllff	chr1:236139131-236139369(-)$1	238	225	232	17.7424
ggggmmm	chr4:39500501-39500741(-)$1	240	3	10	13.5757
rrrrrrb	chr20:35412088-35412361(-)$1	273	152	159	13.0454
+++++++	chr5:42800482-42800735(-)$1	253	56	63	17.7424
###====	chrX:132699151-132699428(-)$1	277	197	204	13.4999
c::::::	chr20:34327438-34327710(-)$1	272	13	20	13.7272
uuugggg	chr1:20978631-20978920(-)$1	289	128	135	13.6515
HHHH::e	chr6:109688467-109688714(-)$1	247	52	59	13.6515
@@@@@@@	chr4:83346392-83346661(-)$1	269	236	243	17.7424
:::dddd	chr16:1859014-1859285(-)$1	271	102	109	13.5757
:::::::	chr8:22279765-22280006(+)$1	241	133	140	17.7424
"""dddd	chr19:48886155-48886411(-)$1	256	67	74	13.7272
e333eee	chr19:972516-972787(+)$1	271	133	140	13.7272
::::::g	chr16:72819588-72819826(-)$1	238	22	29	17.7424
ee>>>>>	chr14:23239357-23239621(+)$1	264	90	97	13.4999
eee22gg	chr7:45932870-45933097(+)$1	227	125	132	17.7424
=[bbooo	chr11:102269198-102269433(-)$1	235	13	20	13.5757
[ddddss	chr5:96369774-96370017(+)$1	243	139	146	13.7272
##=====	chr11:65270577-65270814(+)$1	237	134	141	13.7272
=======	chr13:48835769-48836054(+)$1	285	24	31	13.3484
:::::::	chr7:103113063-103113336(-)$1	273	133	140	17.7424
d%%%%%%	chr12:54678492-54678749(+)$1	257	81	88	13.3484
f"""ddd	chr11:65269803-65270040(+)$1	237	184	191	17.7424
^^^^^^^	chr2:96850973-96851219(-)$1	246	29	36	17.7424
FFFYYGG	chr12:46756720-46756967(-)$1	247	202	209	13.7272
hhhh444	chr2:216225871-216226108(-)$1	237	80	87	17.7424
!!hhhhh	chr6:109688572-109688845(-)$1	273	122	129	13.7272
:::::::	chr12:50158491-50158714(+)$1	223	39	46	17.7424
:::::::	chr2:153513390-153513655(-)$1	265	66	73	13.6515
GG:gggg	chr3:50036892-50037177(+)$1	285	255	262	17.7424
HHHHHHH	chr17:70120952-70121192(+)$1	240	9	16	17.7424
::eeeee	chr6:119500163-119500416(-)$1	253	97	104	13.0454
dd22bb4	chr1:19453930-19454211(-)$1	281	235	242	13.6515
gnnnnng	chr11:65272684-65272911(+)$1	227	199	206	13.6515
FFFFFF:	chr16:31199225-31199534(+)$1	309	301	308	13.5757
ee::::g	chr9:33111089-33111353(-)$1	264	46	53	13.3484
HHHHH{D	chr1:113455371-113455645(-)$1	274	26	33	13.1969
:::::dd	chr8:101931286-101931573(-)$1	287	46	53	13.7272
:::::JJ	chr1:234742451-234742690(-)$1	239	153	160	17.7424
\\\\\\\	chr14:50361276-50361521(+)$1	245	226	233	13.6515
:::ccc#	chr4:166418916-166419151(+)$1	235	171	178	13.1969
:::::::	chr20:35869811-35870055(+)$1	244	4	11	13.7272
ee:::::	chr2:26613074-26613322(+)$1	248	188	195	13.3484
EEENNNN	chr1:40758932-40759196(+)$1	264	46	53	17.7424
wwwwwww	chr20:61827320-61827574(-)$1	254	54	61	13.3484
:::::::	chr16:31198077-31198329(+)$1	252	162	169	13.7272
oooofff	chr7:6502276-6502527(-)$1	251	84	91	17.7424
yyyyyyy	chr11:130014314-130014556(+)$1	242	179	186	17.7424
ggggggg	chr2:118866094-118866348(+)$1	254	84	91	17.7424
&&&&&&g	chr6:132212919-132213165(+)$1	246	143	150	13.6515
!ccc!!f	chr8:98863673-98863924(+)$1	251	148	155	17.7424
eeeee[d	chr5:42800132-42800364(-)$1	232	49	56	17.7424

#DB
.(((((.	chr20:46284436-46284692(+)$1	1	59	66	13.5757
.......	chr12:53873288-53873546(+)$1	1	28	35	17.7424
((..(((	chr6:163994290-163994502(+)$1	1	7	14	13.4999
.....((	chr12:46766257-46766502(-)$1	1	88	95	13.4999
..)))))	chrX:70764420-70764687(+)$1	1	85	92	13.7272
.((((((	chr3:145787441-145787673(-)$1	1	55	62	17.7424
((...((	chr6:109688419-109688664(-)$1	1	2	9	13.6515
...((((	chr6:34256186-34256444(-)$1	1	13	20	13.1969
..(((((	chr17:37687895-37688186(+)$1	1	50	57	17.7424
..(((((	chr7:6501321-6501597(-)$1	1	0	7	13.6515
.....((	chr5:179156663-179156907(+)$1	1	4	11	13.1969
..)))))	chr5:179157586-179157827(+)$1	1	99	106	13.5757
).)))).	chr7:139824259-139824537(-)$1	1	173	180	13.1969
(....))	chr7:26232921-26233164(-)$1	1	161	168	13.7272
((...))	chr1:236139131-236139369(-)$1	1	225	232	17.7424
((((...	chr4:39500501-39500741(-)$1	1	3	10	13.5757
......)	chr20:35412088-35412361(-)$1	1	152	159	13.0454
.......	chr5:42800482-42800735(-)$1	1	56	63	17.7424
...((((	chrX:132699151-132699428(-)$1	1	197	204	13.4999
)......	chr20:34327438-34327710(-)$1	1	13	20	13.7272
...))))	chr1:20978631-20978920(-)$1	1	128	135	13.6515
((((..(	chr6:109688467-109688714(-)$1	1	52	59	13.6515
.......	chr4:83346392-83346661(-)$1	1	236	243	17.7424
...((((	chr16:1859014-1859285(-)$1	1	102	109	13.5757
.......	chr8:22279765-22280006(+)$1	1	133	140	17.7424
...((((	chr19:48886155-48886411(-)$1	1	67	74	13.7272
)...)))	chr19:972516-972787(+)$1	1	133	140	13.7272
......(	chr16:72819588-72819826(-)$1	1	22	29	17.7424
)).....	chr14:23239357-23239621(+)$1	1	90	97	13.4999
)))..))	chr7:45932870-45933097(+)$1	1	125	132	17.7424
(.((...	chr11:102269198-102269433(-)$1	1	13	20	13.5757
.((((..	chr5:96369774-96370017(+)$1	1	139	146	13.7272
..(((((	chr11:65270577-65270814(+)$1	1	134	141	13.7272
(((((((	chr13:48835769-48836054(+)$1	1	24	31	13.3484
.......	chr7:103113063-103113336(-)$1	1	133	140	17.7424
(......	chr12:54678492-54678749(+)$1	1	81	88	13.3484
(...(((	chr11:65269803-65270040(+)$1	1	184	191	17.7424
.......	chr2:96850973-96851219(-)$1	1	29	36	17.7424
)))..))	chr12:46756720-46756967(-)$1	1	202	209	13.7272
))))...	chr2:216225871-216226108(-)$1	1	80	87	17.7424
..(((((	chr6:109688572-109688845(-)$1	1	122	129	13.7272
.......	chr12:50158491-50158714(+)$1	1	39	46	17.7424
.......	chr2:153513390-153513655(-)$1	1	66	73	13.6515
)).((((	chr3:50036892-50037177(+)$1	1	255	262	17.7424
(((((((	chr17:70120952-70121192(+)$1	1	9	16	17.7424
..(((((	chr6:119500163-119500416(-)$1	1	97	104	13.0454
))..)).	chr1:19453930-19454211(-)$1	1	235	242	13.6515
(.....)	chr11:65272684-65272911(+)$1	1	199	206	13.6515
)))))).	chr16:31199225-31199534(+)$1	1	301	308	13.5757
))....(	chr9:33111089-33111353(-)$1	1	46	53	13.3484
(((((.(	chr1:113455371-113455645(-)$1	1	26	33	13.1969
.....((	chr8:101931286-101931573(-)$1	1	46	53	13.7272
.....))	chr1:234742451-234742690(-)$1	1	153	160	17.7424
.......	chr14:50361276-50361521(+)$1	1	226	233	13.6515
...(((.	chr4:166418916-166419151(+)$1	1	171	178	13.1969
.......	chr20:35869811-35870055(+)$1	1	4	11	13.7272
)).....	chr2:26613074-26613322(+)$1	1	188	195	13.3484
(((....	chr1:40758932-40759196(+)$1	1	46	53	17.7424
.......	chr20:61827320-61827574(-)$1	1	54	61	13.3484
.......	chr16:31198077-31198329(+)$1	1	162	169	13.7272
....)))	chr7:6502276-6502527(-)$1	1	84	91	17.7424
.......	chr11:130014314-130014556(+)$1	1	179	186	17.7424
(((((((	chr2:118866094-118866348(+)$1	1	84	91	17.7424
......(	chr6:132212919-132213165(+)$1	1	143	150	13.6515
.(((..(	chr8:98863673-98863924(+)$1	1	148	155	17.7424
(((((.(	chr5:42800132-42800364(-)$1	1	49	56	17.7424

#PSSM
U : 0.78	u : 0.07	A : 0.06	G : 0.04	C : 0.03	
U : 0.83	u : 0.07	A : 0.04	C : 0.03	a : 0.01	
U : 0.87	u : 0.09	G : 0.03	
U : 0.86	u : 0.09	C : 0.04	
A : 0.77	a : 0.09	U : 0.06	C : 0.04	G : 0.03	
A : 0.78	a : 0.07	G : 0.06	C : 0.03	U : 0.03	u : 0.01	
A : 0.83	a : 0.09	U : 0.04	G : 0.01	C : 0.01	

#score	989.9393939393934
#seq	66
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_transcript_m2_run2.nuc.txt

#NT
CCUUU	chr6:147548896-147549179(+)$1	283	41	46	15.0000
ccuuu	chr2:15578624-15578869(-)$1	245	93	98	15.0000
ccuuu	chr20:37567582-37567871(+)$1	289	145	150	15.0000
CCUUU	chr22:19500922-19501192(+)$1	270	57	62	15.0000
CCUUU	chr15:51751364-51751630(-)$1	266	108	113	15.0000
CCUUU	chr15:64759426-64759712(+)$1	286	139	144	15.0000
CCUUU	chr2:233586411-233586670(+)$1	259	72	77	15.0000
ccuuu	chr7:12439584-12439863(-)$1	279	46	51	15.0000
ccuuu	chr8:11677405-11677716(+)$1	311	10	15	15.0000
CCUUU	chr8:103876164-103876432(-)$1	268	75	80	15.0000
ccuuu	chr6:26136851-26137105(+)$1	254	108	113	15.0000
ccuuu	chr6:89101680-89101996(-)$1	316	180	185	15.0000
ccuuu	chr5:131119689-131119957(-)$1	268	111	116	15.0000
ccuuu	chr7:156982343-156982628(+)$1	285	6	11	15.0000
CCUUU	chr1:29396933-29397250(+)$1	317	131	136	15.0000
ccuuu	chr6:26134145-26134421(+)$1	276	14	19	15.0000
ccuuu	chr3:47352196-47352463(+)$1	267	128	133	15.0000
CCUUU	chrX:134665302-134665560(+)$1	258	142	147	15.0000
ccuuu	chr5:135490468-135490744(+)$1	276	8	13	15.0000
CCUUU	chr1:143455797-143456085(-)$1	288	13	18	15.0000
CCUUU	chr2:97557568-97557849(-)$1	281	107	112	15.0000
ccuuu	chrX:44847462-44847726(+)$1	264	46	51	15.0000
ccuuu	chr5:131788713-131789004(+)$1	291	110	115	15.0000
ccuuu	chr1:51232163-51232438(-)$1	275	72	77	15.0000
ccuuu	chr1:16933454-16933764(-)$1	310	117	122	15.0000
ccuuu	chr3:152087061-152087297(+)$1	236	109	114	15.0000
ccuuu	chr2:39557510-39557797(-)$1	287	138	143	15.0000
CCUUU	chr6:4789849-4790145(+)$1	296	111	116	15.0000
CCUUU	chr2:15560906-15561164(-)$1	258	158	163	15.0000
CCUUU	chr2:85547322-85547584(-)$1	262	244	249	15.0000
ccuuu	chr8:105588704-105589008(-)$1	304	254	259	15.0000
CCUUU	chr14:24110581-24110868(+)$1	287	123	128	15.0000
ccuuu	chr1:167965959-167966228(+)$1	269	189	194	15.0000
CCUUU	chr11:57585408-57585689(+)$1	281	62	67	15.0000
CCUUU	chr6:4893319-4893573(+)$1	254	89	94	15.0000
ccuuu	chr7:8105943-8106222(+)$1	279	199	204	15.0000
ccuuu	chr6:35343924-35344182(+)$1	258	209	214	15.0000
ccuuu	chr2:168702091-168702353(-)$1	262	17	22	15.0000
CCUUU	chr7:148546322-148546667(-)$1	345	142	147	15.0000
CCUUU	chr1:246213761-246214022(-)$1	261	146	151	15.0000
CCUUU	chr12:116614124-116614391(-)$1	267	116	121	15.0000
ccuuu	chr11:68291618-68291853(+)$1	235	189	194	15.0000
CCUUU	chr17:68073271-68073613(-)$1	342	18	23	15.0000
ccuuu	chr12:62712093-62712428(+)$1	335	189	194	15.0000
ccuuu	chr9:126022129-126022396(-)$1	267	24	29	15.0000
ccuuu	chr10:32333687-32334030(-)$1	343	307	312	15.0000
ccuuu	chr18:2679691-2679969(+)$1	278	124	129	15.0000
ccuuu	chr3:15880897-15881204(-)$1	307	278	283	15.0000
ccuuu	chr1:161884029-161884329(+)$1	300	263	268	15.0000
ccuuu	chr17:5520443-5520761(-)$1	318	110	115	15.0000
CCUUU	chr9:127852411-127852738(-)$1	327	167	172	15.0000
CCUUU	chr2:20487973-20488213(-)$1	240	30	35	15.0000
ccuuu	chr15:56525327-56525603(-)$1	276	159	164	15.0000
CCUUU	chr7:92291153-92291579(-)$1	426	12	17	15.0000
ccuuu	chr7:129723678-129723955(+)$1	277	4	9	15.0000
ccuuu	chr1:114312786-114313071(-)$1	285	99	104	15.0000
CCUUU	chr20:45841683-45841963(-)$1	280	7	12	15.0000
CCUUU	chr5:56539128-56539381(+)$1	253	105	110	15.0000
CCUUU	chr12:32879937-32880233(+)$1	296	58	63	15.0000
ccuuu	chr2:136250200-136250551(-)$1	351	67	72	15.0000
CCUUU	chr1:235321865-235322163(-)$1	298	132	137	15.0000
CCUUU	chr16:23901861-23902154(+)$1	293	210	215	15.0000
ccuuu	chr18:53233776-53234086(-)$1	310	48	53	15.0000
ccuuu	chr9:37167916-37168217(+)$1	301	65	70	15.0000
ccuuu	chr3:43569319-43569592(-)$1	273	102	107	15.0000
ccuuu	chr3:138391942-138392208(-)$1	266	60	65	15.0000
ccuuu	chr18:2723616-2723876(+)$1	260	108	113	15.0000
CCUUU	chr6:143506377-143506622(+)$1	245	144	149	15.0000
ccuuu	chr1:143439573-143439815(-)$1	242	63	68	15.0000
ccuuu	chr12:132482406-132482749(+)$1	343	135	140	15.0000
ccuuu	chr2:27011280-27011566(+)$1	286	27	32	15.0000
ccuuu	chr2:236640788-236641074(+)$1	286	62	67	15.0000

#otherMatches

#Struct PSSM
c::::	chr1:36353305-36353594(+)$1	289	67	72	15.0000
bbeee	chr6:147548896-147549179(+)$1	283	41	46	15.0000
oooee	chr2:15578624-15578869(-)$1	245	93	98	15.0000
77777	chr20:37567582-37567871(+)$1	289	145	150	15.0000
:::::	chr22:19500922-19501192(+)$1	270	57	62	15.0000
cc:::	chr15:51751364-51751630(-)$1	266	108	113	15.0000
dd!!b	chr15:64759426-64759712(+)$1	286	139	144	15.0000
(((((	chr2:233586411-233586670(+)$1	259	72	77	15.0000
bbmmm	chr7:12439584-12439863(-)$1	279	46	51	15.0000
:::::	chr8:11677405-11677716(+)$1	311	10	15	15.0000
yyyyy	chr8:103876164-103876432(-)$1	268	75	80	15.0000
:::::	chr6:26136851-26137105(+)$1	254	108	113	15.0000
ppppb	chr6:89101680-89101996(-)$1	316	180	185	15.0000
ccooo	chr5:131119689-131119957(-)$1	268	111	116	15.0000
:::::	chr7:156982343-156982628(+)$1	285	6	11	15.0000
^^^^^	chr1:29396933-29397250(+)$1	317	131	136	15.0000
FFFMM	chr6:26134145-26134421(+)$1	276	14	19	15.0000
dddd4	chr3:47352196-47352463(+)$1	267	128	133	15.0000
:::::	chrX:134665302-134665560(+)$1	258	142	147	15.0000
dddoo	chr5:135490468-135490744(+)$1	276	8	13	15.0000
b!!ff	chr1:143455797-143456085(-)$1	288	13	18	15.0000
eeeec	chr2:97557568-97557849(-)$1	281	107	112	15.0000
eeell	chrX:44847462-44847726(+)$1	264	46	51	15.0000
FFFFF	chr5:131788713-131789004(+)$1	291	110	115	15.0000
ddlll	chr1:51232163-51232438(-)$1	275	72	77	15.0000
:::::	chr1:16933454-16933764(-)$1	310	117	122	15.0000
qqqqq	chr3:152087061-152087297(+)$1	236	109	114	15.0000
bbooo	chr2:39557510-39557797(-)$1	287	138	143	15.0000
c####	chr6:4789849-4790145(+)$1	296	111	116	15.0000
ccvvv	chr2:15560906-15561164(-)$1	258	158	163	15.0000
22fff	chr2:85547322-85547584(-)$1	262	244	249	15.0000
fffff	chr8:105588704-105589008(-)$1	304	254	259	15.0000
q====	chr14:24110581-24110868(+)$1	287	123	128	15.0000
EEE::	chr1:167965959-167966228(+)$1	269	189	194	15.0000
^^^^^	chr11:57585408-57585689(+)$1	281	62	67	15.0000
>>>>>	chr6:4893319-4893573(+)$1	254	89	94	15.0000
dJJJJ	chr7:8105943-8106222(+)$1	279	199	204	15.0000
f4444	chr6:35343924-35344182(+)$1	258	209	214	15.0000
FFFFF	chr2:168702091-168702353(-)$1	262	17	22	15.0000
darrr	chr7:148546322-148546667(-)$1	345	142	147	15.0000
obb33	chr1:246213761-246214022(-)$1	261	146	151	15.0000
+++++	chr12:116614124-116614391(-)$1	267	116	121	15.0000
nnnnb	chr11:68291618-68291853(+)$1	235	189	194	15.0000
cc+++	chr17:68073271-68073613(-)$1	342	18	23	15.0000
bb22b	chr12:62712093-62712428(+)$1	335	189	194	15.0000
DKKGG	chr9:126022129-126022396(-)$1	267	24	29	15.0000
::EEE	chr10:32333687-32334030(-)$1	343	307	312	15.0000
33eee	chr18:2679691-2679969(+)$1	278	124	129	15.0000
:::::	chr3:15880897-15881204(-)$1	307	278	283	15.0000
:::::	chr1:161884029-161884329(+)$1	300	263	268	15.0000
ppppp	chr17:5520443-5520761(-)$1	318	110	115	15.0000
^^^^^	chr9:127852411-127852738(-)$1	327	167	172	15.0000
xxxxx	chr2:20487973-20488213(-)$1	240	30	35	15.0000
nnnnn	chr15:56525327-56525603(-)$1	276	159	164	15.0000
CCC::	chr7:92291153-92291579(-)$1	426	12	17	15.0000
:::::	chr7:129723678-129723955(+)$1	277	4	9	15.0000
qbb22	chr1:114312786-114313071(-)$1	285	99	104	15.0000
eeeee	chr20:45841683-45841963(-)$1	280	7	12	15.0000
:::::	chr5:56539128-56539381(+)$1	253	105	110	15.0000
&&&&e	chr12:32879937-32880233(+)$1	296	58	63	15.0000
{AMMM	chr2:136250200-136250551(-)$1	351	67	72	15.0000
^^^^^	chr1:235321865-235322163(-)$1	298	132	137	15.0000
piiii	chr16:23901861-23902154(+)$1	293	210	215	15.0000
:::::	chr18:53233776-53234086(-)$1	310	48	53	15.0000
::::B	chr9:37167916-37168217(+)$1	301	65	70	15.0000
=====	chr3:43569319-43569592(-)$1	273	102	107	15.0000
g:::g	chr3:138391942-138392208(-)$1	266	60	65	15.0000
dd:gg	chr18:2723616-2723876(+)$1	260	108	113	15.0000
:::::	chr6:143506377-143506622(+)$1	245	144	149	15.0000
ccc[b	chr1:143439573-143439815(-)$1	242	63	68	15.0000
DDDQQ	chr12:132482406-132482749(+)$1	343	135	140	15.0000
:::::	chr2:27011280-27011566(+)$1	286	27	32	15.0000
cccpp	chr2:236640788-236641074(+)$1	286	62	67	15.0000

#DB
)....	chr1:36353305-36353594(+)$1	1	67	72	15.0000
)))))	chr6:147548896-147549179(+)$1	1	41	46	15.0000
...))	chr2:15578624-15578869(-)$1	1	93	98	15.0000
.....	chr20:37567582-37567871(+)$1	1	145	150	15.0000
.....	chr22:19500922-19501192(+)$1	1	57	62	15.0000
))...	chr15:51751364-51751630(-)$1	1	108	113	15.0000
((..(	chr15:64759426-64759712(+)$1	1	139	144	15.0000
.....	chr2:233586411-233586670(+)$1	1	72	77	15.0000
((...	chr7:12439584-12439863(-)$1	1	46	51	15.0000
.....	chr8:11677405-11677716(+)$1	1	10	15	15.0000
.....	chr8:103876164-103876432(-)$1	1	75	80	15.0000
.....	chr6:26136851-26137105(+)$1	1	108	113	15.0000
....)	chr6:89101680-89101996(-)$1	1	180	185	15.0000
((...	chr5:131119689-131119957(-)$1	1	111	116	15.0000
.....	chr7:156982343-156982628(+)$1	1	6	11	15.0000
.....	chr1:29396933-29397250(+)$1	1	131	136	15.0000
(((..	chr6:26134145-26134421(+)$1	1	14	19	15.0000
)))).	chr3:47352196-47352463(+)$1	1	128	133	15.0000
.....	chrX:134665302-134665560(+)$1	1	142	147	15.0000
(((..	chr5:135490468-135490744(+)$1	1	8	13	15.0000
(..((	chr1:143455797-143456085(-)$1	1	13	18	15.0000
(((((	chr2:97557568-97557849(-)$1	1	107	112	15.0000
(((..	chrX:44847462-44847726(+)$1	1	46	51	15.0000
(((((	chr5:131788713-131789004(+)$1	1	110	115	15.0000
((...	chr1:51232163-51232438(-)$1	1	72	77	15.0000
.....	chr1:16933454-16933764(-)$1	1	117	122	15.0000
.....	chr3:152087061-152087297(+)$1	1	109	114	15.0000
((...	chr2:39557510-39557797(-)$1	1	138	143	15.0000
(....	chr6:4789849-4790145(+)$1	1	111	116	15.0000
((...	chr2:15560906-15561164(-)$1	1	158	163	15.0000
..)))	chr2:85547322-85547584(-)$1	1	244	249	15.0000
)))))	chr8:105588704-105589008(-)$1	1	254	259	15.0000
.))))	chr14:24110581-24110868(+)$1	1	123	128	15.0000
)))..	chr1:167965959-167966228(+)$1	1	189	194	15.0000
.....	chr11:57585408-57585689(+)$1	1	62	67	15.0000
.....	chr6:4893319-4893573(+)$1	1	89	94	15.0000
)))))	chr7:8105943-8106222(+)$1	1	199	204	15.0000
)....	chr6:35343924-35344182(+)$1	1	209	214	15.0000
(((((	chr2:168702091-168702353(-)$1	1	17	22	15.0000
((...	chr7:148546322-148546667(-)$1	1	142	147	15.0000
.))..	chr1:246213761-246214022(-)$1	1	146	151	15.0000
.....	chr12:116614124-116614391(-)$1	1	116	121	15.0000
....)	chr11:68291618-68291853(+)$1	1	189	194	15.0000
((...	chr17:68073271-68073613(-)$1	1	18	23	15.0000
))..)	chr12:62712093-62712428(+)$1	1	189	194	15.0000
(..((	chr9:126022129-126022396(-)$1	1	24	29	15.0000
..)))	chr10:32333687-32334030(-)$1	1	307	312	15.0000
..)))	chr18:2679691-2679969(+)$1	1	124	129	15.0000
.....	chr3:15880897-15881204(-)$1	1	278	283	15.0000
.....	chr1:161884029-161884329(+)$1	1	263	268	15.0000
.....	chr17:5520443-5520761(-)$1	1	110	115	15.0000
.....	chr9:127852411-127852738(-)$1	1	167	172	15.0000
.....	chr2:20487973-20488213(-)$1	1	30	35	15.0000
.....	chr15:56525327-56525603(-)$1	1	159	164	15.0000
(((..	chr7:92291153-92291579(-)$1	1	12	17	15.0000
.....	chr7:129723678-129723955(+)$1	1	4	9	15.0000
.))..	chr1:114312786-114313071(-)$1	1	99	104	15.0000
(((((	chr20:45841683-45841963(-)$1	1	7	12	15.0000
.....	chr5:56539128-56539381(+)$1	1	105	110	15.0000
....(	chr12:32879937-32880233(+)$1	1	58	63	15.0000
.(...	chr2:136250200-136250551(-)$1	1	67	72	15.0000
.....	chr1:235321865-235322163(-)$1	1	132	137	15.0000
.))))	chr16:23901861-23902154(+)$1	1	210	215	15.0000
.....	chr18:53233776-53234086(-)$1	1	48	53	15.0000
....)	chr9:37167916-37168217(+)$1	1	65	70	15.0000
)))))	chr3:43569319-43569592(-)$1	1	102	107	15.0000
)...(	chr3:138391942-138392208(-)$1	1	60	65	15.0000
)).((	chr18:2723616-2723876(+)$1	1	108	113	15.0000
.....	chr6:143506377-143506622(+)$1	1	144	149	15.0000
(((.(	chr1:143439573-143439815(-)$1	1	63	68	15.0000
(((..	chr12:132482406-132482749(+)$1	1	135	140	15.0000
.....	chr2:27011280-27011566(+)$1	1	27	32	15.0000
(((..	chr2:236640788-236641074(+)$1	1	62	67	15.0000

#PSSM
c : 0.58	C : 0.41	
c : 0.58	C : 0.41	
u : 0.58	U : 0.41	
u : 0.58	U : 0.41	
u : 0.58	U : 0.41	

#score	1095.0000000000002
#seq	73
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_CDS_m3_run1.nuc.txt

#NT
cacagguacagccacaggcacauucacagggcccaaggcaggugcagcugcagcaggaggcagagccgcugaagcaggugcagccacaggugcagcCCCAGGCACAUUCACAGCCCCCAAGGCAGGUGCAGCUGCAGCUGCAGAAGCAGGUCCAGACACAGACAUAUCCACAGGUCCACACACAGGCACAGCCAAGCGUCCAGCCACAGGAGCAUCCUCCAGCGCAGGUGUCAGUACAGCCACCAGAGC	chr9:130941082-130941373(-)$1	291	17	266	482.0000

#otherMatches

#Struct PSSM
mmmma]ddddDDDDFFFFFFLLLGGGGGGG::::::CCC{DDDDKKEEEEE::ddddmmmmddddcccqqqqqqqqccc:::::BBKKDDDD::::::::ccclllccc::bbnnnnnbb::::ddddmmmmdddd:bb[a[dddd[aooooooa]dddd]a]bb:DDDDYYBB}EEEEE~~~~DDDDYYCCC:::eeeee!!eeeeeqqqqqqqqeeeeeeeeee:GGGGGGG~~~~FFFFFF}DDDD	chr9:130941022-130941282(-)$1	260	10	259	482.0000
c"""ccclllccc333ccc:::::::::EEEEEMMMMDDDD{JJJJJJJJJJ{A::::ccc"""cccbbmmmmbb]ccc333ccc::::ddddqqqqqqqqdddd:::::::cccnnnnnccc:A}JJJJJJJJJJ}DDDD|||||||EEEEE:::::::::::::::::::DDDD::::::::ccclllccc::bbnnnnnbb::::ddddmmmmdddd:bb[a[dddd[aooooooa]dddd]a]bb	chr9:130941082-130941373(-)$1	291	17	266	482.0000

#DB
....).))))((((((((((...(((((((......(((.((((..(((((..((((....))))(((........))).....((..((((........(((...)))..((.....))....((((....)))).((.(.((((.(......).)))).).)).))))..)).)))))....))))..)))...(((((..(((((........)))))))))).)))))))....)))))).))))	chr9:130941022-130941282(-)$1	1	10	259	482.0000
(...(((...)))...))).........(((((....((((.((((((((((.(....(((...(((((....)).)))...)))....((((........)))).......(((.....))).).)))))))))).)))).......)))))...................((((........(((...)))..((.....))....((((....)))).((.(.((((.(......).)))).).))	chr9:130941082-130941373(-)$1	1	17	266	482.0000

#PSSM
c : 1.00	
a : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
g : 0.50	a : 0.50	
c : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
C : 0.50	c : 0.50	
C : 0.50	a : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
U : 0.50	u : 0.50	
U : 0.50	u : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	u : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	c : 0.50	
U : 0.50	a : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	c : 0.50	
G : 0.50	a : 0.50	
C : 0.50	g : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	u : 0.50	
G : 0.50	g : 0.50	
A : 0.50	a : 0.50	
C : 0.50	a : 0.50	
A : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
C : 0.50	u : 0.50	
A : 0.50	g : 0.50	
U : 0.50	c : 0.50	
A : 0.50	a : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	u : 0.50	
C : 0.50	g : 0.50	
C : 0.50	c : 0.50	
A : 0.50	a : 0.50	
C : 0.50	g : 0.50	
A : 0.50	c : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
A : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
C : 1.00	

#score	964.0
#seq	2
#width	249
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_UTR_m2_run2.nuc.txt

#NT
AGGGGGCUGA	chr19:18548455-18548762(-)$1	307	100	110	16.2500
GGGGAGCUGG	chr19:7977911-7978173(+)$1	262	215	225	18.3333
UGGGGGCGGG	chr19:42759066-42759353(-)$1	287	225	235	18.2291
gcggggcggg	chr3:197024614-197024864(-)$1	250	94	104	15.4166
CGGGGGCUGA	chr6:33377554-33377798(+)$1	244	199	209	16.4583
GGGGGUCUGG	chr13:108867024-108867317(-)$1	293	28	38	17.6041
CAGGGGCUGG	chr11:18034128-18034428(-)$1	300	12	22	17.2916
GCGGGGCUGG	chr9:139743569-139743832(+)$1	263	109	119	18.2291
AGGGGGCUGG	chr20:307984-308268(+)$1	284	90	100	20.8333
AGCGGGCUGG	chr5:114880083-114880351(-)$1	268	234	244	16.3541
cgggggcggg	chr2:159313552-159313815(+)$1	263	31	41	18.2291
GGGGGACUGG	chr1:87380378-87380626(+)$1	248	176	186	17.6041
CUGGGGCUGG	chr9:99180451-99180696(-)$1	245	184	194	17.3958
AUGGGGCUGG	chr1:26797411-26797716(+)$1	305	45	55	17.1875
UGGGGGUUGG	chr7:77166496-77166761(+)$1	265	98	108	16.7708
UGGGAGCUGG	chr7:150779795-150780050(-)$1	255	120	130	17.7083
GGGGAGCUGG	chr7:143078451-143078710(+)$1	259	130	140	18.3333
GCGGGGCUGG	chr6:29600370-29600647(-)$1	277	115	125	18.2291
AGGGAGCUGG	chr11:64511565-64511827(-)$1	262	95	105	17.5000
GGGGACCUGG	chr3:10360777-10361104(-)$1	327	109	119	14.3750
UGUGGGCUGG	chr19:41771017-41771315(+)$1	298	96	106	16.4583
AGGGGUCUGG	chr19:892415-892665(-)$1	250	54	64	16.7708
CGCGGGCUGG	chr4:56411983-56412210(-)$1	227	44	54	16.5625
GGGGGGCUGG	chr7:2292122-2292373(-)$1	251	109	119	21.6666
GGGGAGCGGG	chr2:157198608-157198829(-)$1	221	207	217	15.5208
cgggggcggg	chr2:159313505-159313752(+)$1	247	78	88	18.2291
cgggggccgg	chr8:102217317-102217686(-)$1	369	76	86	17.8125
ggggagCUGG	chr10:126848936-126849244(-)$1	308	95	105	18.3333
UGGGGGCCGG	chr12:49332042-49332314(-)$1	272	85	95	17.8125
GAGGGGCUGG	chr11:66025575-66025829(+)$1	254	111	121	17.9166
CGGGGGCUGG	chr16:28875335-28875639(+)$1	304	34	44	21.0416
UGGGGGAUGG	chr16:29678293-29678572(+)$1	279	55	65	16.6666
UGGGGGUUGG	chr20:307486-307765(-)$1	279	55	65	16.7708
gggggcccgg	chr17:7142615-7142883(-)$1	268	91	101	14.4791
Ggggagcggg	chr2:27665142-27665392(+)$1	250	13	23	15.5208
UGGGGACUGG	chr16:619622-619888(+)$1	266	234	244	16.9791
cgggggcggg	chr19:15442605-15442860(-)$1	255	91	101	18.2291
GCGGGGCUGG	chr19:2270268-2270481(+)$1	213	4	14	18.2291
CUGGGGCUGG	chr15:68346816-68347082(+)$1	266	223	233	17.3958
AGGCGGCUGG	chr11:61197024-61197321(-)$1	297	157	167	16.0416
UGGGGGGUGG	chr19:18554128-18554416(-)$1	288	107	117	16.7708
UGGGGGGUGG	chr22:20110068-20110318(+)$1	250	223	233	16.7708
GCGGGGCUGG	chr7:5569338-5569633(-)$1	295	107	117	18.2291
GGGGGGCUGG	chr20:57467385-57467636(+)$1	251	135	145	21.6666
CGGGGGCCGG	chr19:41770656-41770900(+)$1	244	63	73	17.8125
AGGGGGCAGG	chr14:104164704-104164945(+)$1	241	47	57	17.2916
AGGGGGCGGG	chr4:129208779-129209062(-)$1	283	78	88	18.0208

#otherMatches

#Struct PSSM
iiiiiiiccc	chr2:97533539-97533772(-)$1	233	191	201	17.0833
YYGGGGGGG:	chr19:18548455-18548762(-)$1	307	100	110	16.2500
ffff]bb]bb	chr19:7977911-7978173(+)$1	262	215	225	18.3333
bb333bb]dd	chr19:42759066-42759353(-)$1	287	225	235	18.2291
:ffffff[ee	chr3:197024614-197024864(-)$1	250	94	104	15.4166
eeeee[ammm	chr6:33377554-33377798(+)$1	244	199	209	16.4583
EEEEdddd[c	chr13:108867024-108867317(-)$1	293	28	38	17.6041
E{JJJJJJJJ	chr11:18034128-18034428(-)$1	300	12	22	17.2916
ggggggdddd	chr9:139743569-139743832(+)$1	263	109	119	18.2291
hhhhhh22==	chr20:307984-308268(+)$1	284	90	100	20.8333
]bb22dddd3	chr5:114880083-114880351(-)$1	268	234	244	16.3541
JJJJJJGGGG	chr2:159313552-159313815(+)$1	263	31	41	18.2291
ggg!!dddd[	chr1:87380378-87380626(+)$1	248	176	186	17.6041
((hhhhhhhh	chr9:99180451-99180696(-)$1	245	184	194	17.3958
:ffffff[cc	chr1:26797411-26797716(+)$1	305	45	55	17.1875
eee[a[appp	chr7:77166496-77166761(+)$1	265	98	108	16.7708
eccc!!bboo	chr7:150779795-150780050(-)$1	255	120	130	17.7083
bbbb[fffff	chr7:143078451-143078710(+)$1	259	130	140	18.3333
ff!!dddd++	chr6:29600370-29600647(-)$1	277	115	125	18.2291
eeee::::::	chr11:64511565-64511827(-)$1	262	95	105	17.5000
FFFFFZZZCC	chr3:10360777-10361104(-)$1	327	109	119	14.3750
ooooofffff	chr19:41771017-41771315(+)$1	298	96	106	16.4583
"hhhhhhhh"	chr19:892415-892665(-)$1	250	54	64	16.7708
ffffffCCCM	chr4:56411983-56412210(-)$1	227	44	54	16.5625
&&&&&ddddn	chr7:2292122-2292373(-)$1	251	109	119	21.6666
EEEEEFFFFF	chr2:157198608-157198829(-)$1	221	207	217	15.5208
JJJJJJGGGG	chr2:159313505-159313752(+)$1	247	78	88	18.2291
eeCCC{FFFF	chr8:102217317-102217686(-)$1	369	76	86	17.8125
c[ffffffss	chr10:126848936-126849244(-)$1	308	95	105	18.3333
JJJJJJKKFF	chr12:49332042-49332314(-)$1	272	85	95	17.8125
iiiiiiiiie	chr11:66025575-66025829(+)$1	254	111	121	17.9166
fffff[dddd	chr16:28875335-28875639(+)$1	304	34	44	21.0416
&&ccc[dddd	chr16:29678293-29678572(+)$1	279	55	65	16.6666
EEFFFFFF::	chr20:307486-307765(-)$1	279	55	65	16.7708
EEEEEFFFFF	chr17:7142615-7142883(-)$1	268	91	101	14.4791
fffffEEEEE	chr2:27665142-27665392(+)$1	250	13	23	15.5208
ii4444ffff	chr16:619622-619888(+)$1	266	234	244	16.9791
eeeeeeeeeb	chr19:15442605-15442860(-)$1	255	91	101	18.2291
IIIIICCCdd	chr19:2270268-2270481(+)$1	213	4	14	18.2291
f$$$$$cccm	chr15:68346816-68347082(+)$1	266	223	233	17.3958
"""=======	chr11:61197024-61197321(-)$1	297	157	167	16.0416
b::::::::i	chr19:18554128-18554416(-)$1	288	107	117	16.7708
EEYYDDDDFF	chr22:20110068-20110318(+)$1	250	223	233	16.7708
FF{HHHHHHH	chr7:5569338-5569633(-)$1	295	107	117	18.2291
==========	chr20:57467385-57467636(+)$1	251	135	145	21.6666
b[ffffff!!	chr19:41770656-41770900(+)$1	244	63	73	17.8125
llldddd]==	chr14:104164704-104164945(+)$1	241	47	57	17.2916
==========	chr4:129208779-129209062(-)$1	283	78	88	18.0208

#DB
))))))))))	chr2:97533539-97533772(-)$1	1	191	201	17.0833
..))))))).	chr19:18548455-18548762(-)$1	1	100	110	16.2500
)))).)).))	chr19:7977911-7978173(+)$1	1	215	225	18.3333
))...)).))	chr19:42759066-42759353(-)$1	1	225	235	18.2291
.((((((.((	chr3:197024614-197024864(-)$1	1	94	104	15.4166
(((((.(...	chr6:33377554-33377798(+)$1	1	199	209	16.4583
((((((((.(	chr13:108867024-108867317(-)$1	1	28	38	17.6041
(.((((((((	chr11:18034128-18034428(-)$1	1	12	22	17.2916
))))))))))	chr9:139743569-139743832(+)$1	1	109	119	18.2291
))))))..))	chr20:307984-308268(+)$1	1	90	100	20.8333
.))..)))).	chr5:114880083-114880351(-)$1	1	234	244	16.3541
((((((((((	chr2:159313552-159313815(+)$1	1	31	41	18.2291
(((..((((.	chr1:87380378-87380626(+)$1	1	176	186	17.6041
..((((((((	chr9:99180451-99180696(-)$1	1	184	194	17.3958
.((((((.((	chr1:26797411-26797716(+)$1	1	45	55	17.1875
(((.(.(...	chr7:77166496-77166761(+)$1	1	98	108	16.7708
((((..((..	chr7:150779795-150780050(-)$1	1	120	130	17.7083
((((.(((((	chr7:143078451-143078710(+)$1	1	130	140	18.3333
((..((((..	chr6:29600370-29600647(-)$1	1	115	125	18.2291
))))......	chr11:64511565-64511827(-)$1	1	95	105	17.5000
)))))...))	chr3:10360777-10361104(-)$1	1	109	119	14.3750
.....)))))	chr19:41771017-41771315(+)$1	1	96	106	16.4583
.((((((((.	chr19:892415-892665(-)$1	1	54	64	16.7708
))))))(((.	chr4:56411983-56412210(-)$1	1	44	54	16.5625
.....((((.	chr7:2292122-2292373(-)$1	1	109	119	21.6666
))))))))))	chr2:157198608-157198829(-)$1	1	207	217	15.5208
((((((((((	chr2:159313505-159313752(+)$1	1	78	88	18.2291
))(((.((((	chr8:102217317-102217686(-)$1	1	76	86	17.8125
(.((((((..	chr10:126848936-126849244(-)$1	1	95	105	18.3333
((((((..((	chr12:49332042-49332314(-)$1	1	85	95	17.8125
))))))))))	chr11:66025575-66025829(+)$1	1	111	121	17.9166
(((((.((((	chr16:28875335-28875639(+)$1	1	34	44	21.0416
..(((.((((	chr16:29678293-29678572(+)$1	1	55	65	16.6666
((((((((..	chr20:307486-307765(-)$1	1	55	65	16.7708
((((((((((	chr17:7142615-7142883(-)$1	1	91	101	14.4791
)))))(((((	chr2:27665142-27665392(+)$1	1	13	23	15.5208
))....))))	chr16:619622-619888(+)$1	1	234	244	16.9791
))))))))))	chr19:15442605-15442860(-)$1	1	91	101	18.2291
((((((((((	chr19:2270268-2270481(+)$1	1	4	14	18.2291
(.....(((.	chr15:68346816-68347082(+)$1	1	223	233	17.3958
...(((((((	chr11:61197024-61197321(-)$1	1	157	167	16.0416
)........(	chr19:18554128-18554416(-)$1	1	107	117	16.7708
))..))))))	chr22:20110068-20110318(+)$1	1	223	233	16.7708
((.(((((((	chr7:5569338-5569633(-)$1	1	107	117	18.2291
((((((((((	chr20:57467385-57467636(+)$1	1	135	145	21.6666
(.((((((..	chr19:41770656-41770900(+)$1	1	63	73	17.8125
...)))).))	chr14:104164704-104164945(+)$1	1	47	57	17.2916
))))))))))	chr4:129208779-129209062(-)$1	1	78	88	18.0208

#PSSM
G : 0.29	U : 0.22	A : 0.18	C : 0.14	c : 0.08	g : 0.06	
G : 0.64	g : 0.14	C : 0.08	U : 0.06	A : 0.04	c : 0.02	
G : 0.77	g : 0.16	C : 0.04	U : 0.02	
G : 0.81	g : 0.16	C : 0.02	
G : 0.70	A : 0.12	g : 0.12	a : 0.04	
G : 0.70	g : 0.14	C : 0.04	U : 0.04	A : 0.04	c : 0.02	
C : 0.75	c : 0.14	U : 0.04	G : 0.04	A : 0.02	
U : 0.72	g : 0.10	G : 0.06	c : 0.04	C : 0.04	A : 0.02	
G : 0.85	g : 0.14	
G : 0.81	g : 0.14	A : 0.04	

#score	840.4166666666665
#seq	48
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_UTR_m2_run2.nuc.txt

#NT
AGGGUGU	chr5:177022806-177023059(+)$1	253	72	79	12.7857
UGGAUGU	chr17:27050607-27050866(+)$1	259	34	41	15.6428
UGGGUGG	chr6:111136056-111136365(-)$1	309	218	225	14.5714
UGGGUGU	chr11:62283507-62283768(-)$1	261	73	80	17.0714
UGGUUGU	chr6:34664399-34664668(-)$1	269	247	254	14.9285
UGGUUGU	chr17:56080815-56081102(-)$1	287	253	260	14.9285
UGGGUGG	chr16:28847428-28847693(+)$1	265	144	151	14.5714
UGGGUGU	chr7:97481370-97481639(-)$1	269	166	173	17.0714
uggaugu	chr11:122929530-122929788(-)$1	258	157	164	15.6428
UGGGUGG	chr2:97525522-97525809(-)$1	287	85	92	14.5714
uggaugu	chr11:122929515-122929719(-)$1	204	88	95	15.6428
UGGGUGU	chr1:150192890-150193164(-)$1	274	203	210	17.0714
UGGGUGA	chr2:220403042-220403331(+)$1	289	115	122	13.8571

#otherMatches

#Struct PSSM
FFF:ddd	chr11:122929519-122929730(-)$1	211	99	106	15.6428
HHHHHH}	chr5:177022806-177023059(+)$1	253	72	79	12.7857
GGGLLLD	chr17:27050607-27050866(+)$1	259	34	41	15.6428
2gggggg	chr6:111136056-111136365(-)$1	309	218	225	14.5714
=======	chr11:62283507-62283768(-)$1	261	73	80	17.0714
DD}BB}A	chr6:34664399-34664668(-)$1	269	247	254	14.9285
eeeee:J	chr17:56080815-56081102(-)$1	287	253	260	14.9285
==EEEEE	chr16:28847428-28847693(+)$1	265	144	151	14.5714
ggggg]c	chr7:97481370-97481639(-)$1	269	166	173	17.0714
FFF:ddd	chr11:122929530-122929788(-)$1	258	157	164	15.6428
ggggqqq	chr2:97525522-97525809(-)$1	287	85	92	14.5714
FFF:ddd	chr11:122929515-122929719(-)$1	204	88	95	15.6428
eee8888	chr1:150192890-150193164(-)$1	274	203	210	17.0714
e[bb[ee	chr2:220403042-220403331(+)$1	289	115	122	13.8571

#DB
(((.(((	chr11:122929519-122929730(-)$1	1	99	106	15.6428
)))))).	chr5:177022806-177023059(+)$1	1	72	79	12.7857
(((...(	chr17:27050607-27050866(+)$1	1	34	41	15.6428
.))))))	chr6:111136056-111136365(-)$1	1	218	225	14.5714
)))))))	chr11:62283507-62283768(-)$1	1	73	80	17.0714
)).)).)	chr6:34664399-34664668(-)$1	1	247	254	14.9285
))))).)	chr17:56080815-56081102(-)$1	1	253	260	14.9285
))(((((	chr16:28847428-28847693(+)$1	1	144	151	14.5714
))))).)	chr7:97481370-97481639(-)$1	1	166	173	17.0714
(((.(((	chr11:122929530-122929788(-)$1	1	157	164	15.6428
((((...	chr2:97525522-97525809(-)$1	1	85	92	14.5714
(((.(((	chr11:122929515-122929719(-)$1	1	88	95	15.6428
)))....	chr1:150192890-150193164(-)$1	1	203	210	17.0714
(.((.((	chr2:220403042-220403331(+)$1	1	115	122	13.8571

#PSSM
U : 0.71	u : 0.21	A : 0.07	
G : 0.78	g : 0.21	
G : 0.78	g : 0.21	
G : 0.57	a : 0.21	U : 0.14	A : 0.07	
U : 0.78	u : 0.21	
G : 0.78	g : 0.21	
U : 0.49	u : 0.21	G : 0.21	A : 0.07	

#score	213.99999999999991
#seq	14
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_transcript_m2_run2.nuc.txt

#NT
GUGCAGGUGAGUGUUGGGCGUGGGCGCGGUGGUGUGUGCAGGUGAGUGUUGGGUGCAGGCAUGGUUGCAGGUGAGUGUUGGGCGCGGGCGCGGUGGUUUGUGCAGGUGAGUGUUGGGUGCGGGCAUGGUGGUUGCAGGUGAGUGUUGGGUGUAGGCGUGGUGGUGUGUGCAGGUGAGUGUUGGGCGUAGGCGUGGUGGUUGCAGGUGAGUGUUGGGCAUGGGCGCGGUGUGUGCAGGUGAGUGUUGGGCGCGGGCGUGGUGGUGUGUGCAGGUGAGUGUUGGGCGCAGGCGCGGUGGUUUGUGCAG	chr7:933014-933329(+)$1	315	1	307	665.5000

#otherMatches

#Struct PSSM
BBKKEEEEE{EEEEE::ddddmmmmddddbb[cccpppppppccc]bbccc[ddddmmmmdddd]ccc::::::eeeee[eeeee!!bb[bb"""ccc[eeeee+++++++++++++dddd[bb[bb[eeeee[bb[bbrrrrrrrrrbb]bb]eeeee]bb22bb]dddd>>>>>>>>>>>>>eeeee]ccc55555bb]bb22eeeee]eeeee::ffffffmmmmffffff::::::::::::::dddd[dddd[abb[eeeeevvvvvvvvvvvvveeeee]bb333a]dddd]dddd::::	chr7:932882-933214(+)$1	332	2	308	665.5000
IIIIIIII{A{CCC:::bb[bb[eeeeemmmmeeeee]bb]bb::::::::::DDDD{DDDD{BB:cccooooooccc:::hhhhhhhhoooooohhhhhhhh::::::::::::::dddd[dddd[abb[eeeeevvvvvvvvvvvvveeeee]bb333a]dddd]dddd:bb!!eeeee[eeeee!!bb[bbpppppppbb]bb22eeeee]eeeee22bbBB}DDDD}DDDD:bb!!eeeee[eeeee!!bb[bbssssssssssbb]bb22eeeee]eeeee22bbCCC}A}IIIIIIIII:	chr7:933014-933329(+)$1	315	1	307	665.5000

#DB
((..(((((.(((((..((((....))))((.(((.......))).))(((.((((....)))).)))......(((((.(((((..((.((...(((.(((((.............((((.((.((.(((((.((.((.........)).)).))))).))..)).)))).............))))).))).....)).))..))))).)))))..((((((....))))))..............((((.((((.(((.(((((.............))))).))...).)))).))))....	chr7:932882-933214(+)$1	1	2	308	665.5000
((((((((.(.(((...((.((.(((((....))))).)).))..........((((.((((.((.(((......)))...((((((((......))))))))..............((((.((((.(((.(((((.............))))).))...).)))).)))).((..(((((.(((((..((.((.......)).))..))))).)))))..)))).)))).)))).((..(((((.(((((..((.((..........)).))..))))).)))))..))))).).))))))))).	chr7:933014-933329(+)$1	1	1	307	665.5000

#PSSM
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	A : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	U : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	
a : 0.50	G : 0.50	
g : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	C : 0.50	
g : 0.50	A : 0.50	
u : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
u : 0.50	G : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	G : 0.50	
g : 0.50	U : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	A : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	C : 0.50	
g : 0.50	A : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	G : 0.50	
g : 0.50	U : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
a : 0.50	A : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
c : 0.50	C : 0.50	
g : 0.50	G : 0.50	
u : 0.50	C : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	G : 0.50	
g : 0.50	G : 0.50	
u : 0.50	U : 0.50	
g : 0.50	U : 0.50	
g : 0.50	U : 0.50	
u : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
A : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
U : 0.50	A : 0.50	
G : 1.00	

#score	1331.0
#seq	2
#width	306
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_transcript_m1_run1.nuc.txt

#NT
UGCAUG	chr20:62299221-62299472(+)$1	251	121	127	17.9999
UGCAUG	chr10:128612890-128613212(+)$1	322	138	144	17.9999
UGCAUG	chr4:1824068-1824330(-)$1	262	127	133	17.9999
UGCAUG	chr12:125341485-125341740(-)$1	255	107	113	17.9999
UGCAUG	chr11:71170097-71170414(+)$1	317	196	202	17.9999
ugcaug	chr10:210172-210426(+)$1	254	37	43	17.9999
UGCAUG	chr22:19962529-19962801(-)$1	272	100	106	17.9999
UGCAUG	chr19:54024504-54024760(+)$1	256	218	224	17.9999
UGCAUG	chr1:27323016-27323272(+)$1	256	106	112	17.9999
UGCAUG	chr16:539735-540045(+)$1	310	188	194	17.9999
UGCAUG	chr6:167359790-167360068(-)$1	278	124	130	17.9999
UGCAUG	chr3:47457357-47457618(-)$1	261	99	105	17.9999
ugcaug	chr1:3386574-3386861(+)$1	287	133	139	17.9999
UGCAUG	chr17:4923042-4923298(+)$1	256	146	152	17.9999
UGCAUG	chr16:10856561-10856891(+)$1	330	187	193	17.9999
UGCAUG	chr1:6657125-6657346(-)$1	221	136	142	17.9999
UGCAUG	chr10:120807349-120807659(-)$1	310	244	250	17.9999
UGCAUG	chr7:47321349-47321643(-)$1	294	134	140	17.9999
UGCAUG	chr22:24942965-24943219(-)$1	254	102	108	17.9999
UGCAUG	chr7:158340340-158340568(-)$1	228	141	147	17.9999
UGCAUG	chr20:48763494-48763711(-)$1	217	99	105	17.9999
ugcaug	chr20:30977121-30977414(+)$1	293	115	121	17.9999
UGCAUG	chr7:139299934-139300184(-)$1	250	105	111	17.9999
ugcaug	chr6:33752820-33753076(-)$1	256	105	111	17.9999
UGCAUG	chr8:13073971-13074244(-)$1	273	114	120	17.9999
UGCAUG	chr3:65892999-65893257(-)$1	258	138	144	17.9999
ugcaug	chr15:50855795-50856037(-)$1	242	87	93	17.9999
UGCAUG	chr7:47321745-47322012(-)$1	267	102	108	17.9999
UGCAUG	chr2:11755355-11755632(+)$1	277	98	104	17.9999
UGCAUG	chr17:795340-795595(-)$1	255	64	70	17.9999
UGCAUG	chr20:62684668-62684970(+)$1	302	49	55	17.9999
UGCAUG	chr17:77082264-77082515(+)$1	251	160	166	17.9999
UGCAUG	chr12:125270682-125270931(-)$1	249	211	217	17.9999
UGCAUG	chr2:10563124-10563486(+)$1	362	113	119	17.9999
UGCAUG	chr15:101783756-101784048(-)$1	292	144	150	17.9999
UGCAUG	chr2:216860086-216860363(-)$1	277	50	56	17.9999
ugcaug	chr17:70550101-70550357(-)$1	256	125	131	17.9999
UGCAUG	chr2:47234219-47234471(+)$1	252	128	134	17.9999
UGCAUG	chr2:234203628-234203908(+)$1	280	132	138	17.9999
UGCAUG	chr8:61704223-61704483(+)$1	260	12	18	17.9999
UGCAUG	chr7:150036842-150037101(-)$1	259	1	7	17.9999
UGCAUG	chr3:194896929-194897178(-)$1	249	101	107	17.9999
UGCAUG	chr17:70535557-70535813(-)$1	256	100	106	17.9999
UGCAUG	chr12:125270544-125270796(-)$1	252	76	82	17.9999
ugcaug	chr1:2340438-2340741(-)$1	303	11	17	17.9999
UGCAUG	chr13:111314432-111314684(-)$1	252	34	40	17.9999
UGCAUG	chr1:44048844-44049091(+)$1	247	100	106	17.9999
UGCAUG	chr17:42399121-42399372(-)$1	251	98	104	17.9999
ugcaug	chr11:859046-859318(-)$1	272	122	128	17.9999
UGCAUG	chr9:131583512-131583781(-)$1	269	105	111	17.9999
UGCAUG	chr19:17688420-17688711(+)$1	291	90	96	17.9999
UGCAUG	chr2:130920586-130920820(-)$1	234	0	6	17.9999
UGCAUG	chr11:65190407-65190614(+)$1	207	46	52	17.9999
UGCAUG	chr20:36014878-36015136(+)$1	258	67	73	17.9999
UGCAUG	chr17:15372817-15373116(-)$1	299	133	139	17.9999
UGCAUG	chr7:130706018-130706279(-)$1	261	29	35	17.9999
UGCAUG	chr12:7024416-7024691(+)$1	275	26	32	17.9999
UGCAUG	chr3:176914242-176914541(-)$1	299	118	124	17.9999
UGCAUG	chr7:891264-891504(+)$1	240	26	32	17.9999
UGCAUG	chr16:29281825-29282119(+)$1	294	44	50	17.9999
UGCAUG	chr20:62592478-62592742(-)$1	264	178	184	17.9999
UGCAUG	chr1:44049013-44049269(+)$1	256	23	29	17.9999
UGCAUG	chr20:23391947-23392227(-)$1	280	127	133	17.9999
UGCAUG	chr16:30932120-30932410(-)$1	290	113	119	17.9999

#otherMatches

#Struct PSSM
fggggg	chr2:223771769-223772091(+)$1	322	120	126	17.9999
dd!!bb	chr20:62299221-62299472(+)$1	251	121	127	17.9999
a]a]ff	chr10:128612890-128613212(+)$1	322	138	144	17.9999
cccfff	chr4:1824068-1824330(-)$1	262	127	133	17.9999
nbb]ee	chr12:125341485-125341740(-)$1	255	107	113	17.9999
=a[bb[	chr11:71170097-71170414(+)$1	317	196	202	17.9999
mbb::d	chr10:210172-210426(+)$1	254	37	43	17.9999
ddd]dd	chr22:19962529-19962801(-)$1	272	100	106	17.9999
A}A~~~	chr19:54024504-54024760(+)$1	256	218	224	17.9999
uuuuuu	chr1:27323016-27323272(+)$1	256	106	112	17.9999
ddd[dd	chr16:539735-540045(+)$1	310	188	194	17.9999
2ccc]f	chr6:167359790-167360068(-)$1	278	124	130	17.9999
nnnnnf	chr3:47457357-47457618(-)$1	261	99	105	17.9999
======	chr1:3386574-3386861(+)$1	287	133	139	17.9999
c]a:::	chr17:4923042-4923298(+)$1	256	146	152	17.9999
[fffff	chr16:10856561-10856891(+)$1	330	187	193	17.9999
]cccbb	chr1:6657125-6657346(-)$1	221	136	142	17.9999
nnnccc	chr10:120807349-120807659(-)$1	310	244	250	17.9999
"dddd[	chr7:47321349-47321643(-)$1	294	134	140	17.9999
dd22cc	chr22:24942965-24943219(-)$1	254	102	108	17.9999
nnnnnb	chr7:158340340-158340568(-)$1	228	141	147	17.9999
[cccll	chr20:48763494-48763711(-)$1	217	99	105	17.9999
ggggg=	chr20:30977121-30977414(+)$1	293	115	121	17.9999
mmdddd	chr7:139299934-139300184(-)$1	250	105	111	17.9999
{BB{BB	chr6:33752820-33753076(-)$1	256	105	111	17.9999
c"""a[	chr8:13073971-13074244(-)$1	273	114	120	17.9999
888888	chr3:65892999-65893257(-)$1	258	138	144	17.9999
::::::	chr15:50855795-50856037(-)$1	242	87	93	17.9999
eeelll	chr7:47321745-47322012(-)$1	267	102	108	17.9999
b]a]gg	chr2:11755355-11755632(+)$1	277	98	104	17.9999
2dddd2	chr17:795340-795595(-)$1	255	64	70	17.9999
^^^^^^	chr20:62684668-62684970(+)$1	302	49	55	17.9999
dddmmm	chr17:77082264-77082515(+)$1	251	160	166	17.9999
dddd]a	chr12:125270682-125270931(-)$1	249	211	217	17.9999
HHH::c	chr2:10563124-10563486(+)$1	362	113	119	17.9999
ddddcc	chr15:101783756-101784048(-)$1	292	144	150	17.9999
JJ::::	chr2:216860086-216860363(-)$1	277	50	56	17.9999
======	chr17:70550101-70550357(-)$1	256	125	131	17.9999
ddd:EE	chr2:47234219-47234471(+)$1	252	128	134	17.9999
[bb[bb	chr2:234203628-234203908(+)$1	280	132	138	17.9999
eddddn	chr8:61704223-61704483(+)$1	260	12	18	17.9999
:DDDD{	chr7:150036842-150037101(-)$1	259	1	7	17.9999
{EEEEE	chr3:194896929-194897178(-)$1	249	101	107	17.9999
{CCCNN	chr17:70535557-70535813(-)$1	256	100	106	17.9999
HHH{CC	chr12:125270544-125270796(-)$1	252	76	82	17.9999
[=====	chr1:2340438-2340741(-)$1	303	11	17	17.9999
dddnnn	chr13:111314432-111314684(-)$1	252	34	40	17.9999
eccc[b	chr1:44048844-44049091(+)$1	247	100	106	17.9999
BIIIII	chr17:42399121-42399372(-)$1	251	98	104	17.9999
cfffff	chr11:859046-859318(-)$1	272	122	128	17.9999
eee(((	chr9:131583512-131583781(-)$1	269	105	111	17.9999
eee]dd	chr19:17688420-17688711(+)$1	291	90	96	17.9999
:EEEEE	chr2:130920586-130920820(-)$1	234	0	6	17.9999
ddd!!c	chr11:65190407-65190614(+)$1	207	46	52	17.9999
nccc33	chr20:36014878-36015136(+)$1	258	67	73	17.9999
:cccmm	chr17:15372817-15373116(-)$1	299	133	139	17.9999
ddddee	chr7:130706018-130706279(-)$1	261	29	35	17.9999
b[bb[c	chr12:7024416-7024691(+)$1	275	26	32	17.9999
ccc[dd	chr3:176914242-176914541(-)$1	299	118	124	17.9999
eBBKKF	chr7:891264-891504(+)$1	240	26	32	17.9999
b[ccc"	chr16:29281825-29282119(+)$1	294	44	50	17.9999
d]bb]g	chr20:62592478-62592742(-)$1	264	178	184	17.9999
fmmmmf	chr1:44049013-44049269(+)$1	256	23	29	17.9999
2ddddd	chr20:23391947-23392227(-)$1	280	127	133	17.9999
!eeeee	chr16:30932120-30932410(-)$1	290	113	119	17.9999

#DB
)(((((	chr2:223771769-223772091(+)$1	1	120	126	17.9999
((..((	chr20:62299221-62299472(+)$1	1	121	127	17.9999
).).))	chr10:128612890-128613212(+)$1	1	138	144	17.9999
((((((	chr4:1824068-1824330(-)$1	1	127	133	17.9999
.)).))	chr12:125341485-125341740(-)$1	1	107	113	17.9999
((.((.	chr11:71170097-71170414(+)$1	1	196	202	17.9999
.))..(	chr10:210172-210426(+)$1	1	37	43	17.9999
))).))	chr22:19962529-19962801(-)$1	1	100	106	17.9999
).)...	chr19:54024504-54024760(+)$1	1	218	224	17.9999
......	chr1:27323016-27323272(+)$1	1	106	112	17.9999
(((.((	chr16:539735-540045(+)$1	1	188	194	17.9999
.))).)	chr6:167359790-167360068(-)$1	1	124	130	17.9999
.....)	chr3:47457357-47457618(-)$1	1	99	105	17.9999
))))))	chr1:3386574-3386861(+)$1	1	133	139	17.9999
).)...	chr17:4923042-4923298(+)$1	1	146	152	17.9999
.(((((	chr16:10856561-10856891(+)$1	1	187	193	17.9999
.)))))	chr1:6657125-6657346(-)$1	1	136	142	17.9999
...)))	chr10:120807349-120807659(-)$1	1	244	250	17.9999
.((((.	chr7:47321349-47321643(-)$1	1	134	140	17.9999
))..))	chr22:24942965-24943219(-)$1	1	102	108	17.9999
.....)	chr7:158340340-158340568(-)$1	1	141	147	17.9999
.(((..	chr20:48763494-48763711(-)$1	1	99	105	17.9999
)))))(	chr20:30977121-30977414(+)$1	1	115	121	17.9999
..))))	chr7:139299934-139300184(-)$1	1	105	111	17.9999
.((.((	chr6:33752820-33753076(-)$1	1	105	111	17.9999
(...(.	chr8:13073971-13074244(-)$1	1	114	120	17.9999
......	chr3:65892999-65893257(-)$1	1	138	144	17.9999
......	chr15:50855795-50856037(-)$1	1	87	93	17.9999
(((...	chr7:47321745-47322012(-)$1	1	102	108	17.9999
).).))	chr2:11755355-11755632(+)$1	1	98	104	17.9999
.)))).	chr17:795340-795595(-)$1	1	64	70	17.9999
......	chr20:62684668-62684970(+)$1	1	49	55	17.9999
(((...	chr17:77082264-77082515(+)$1	1	160	166	17.9999
)))).)	chr12:125270682-125270931(-)$1	1	211	217	17.9999
(((..(	chr2:10563124-10563486(+)$1	1	113	119	17.9999
))))))	chr15:101783756-101784048(-)$1	1	144	150	17.9999
((....	chr2:216860086-216860363(-)$1	1	50	56	17.9999
((((((	chr17:70550101-70550357(-)$1	1	125	131	17.9999
))).((	chr2:47234219-47234471(+)$1	1	128	134	17.9999
.((.((	chr2:234203628-234203908(+)$1	1	132	138	17.9999
(((((.	chr8:61704223-61704483(+)$1	1	12	18	17.9999
.((((.	chr7:150036842-150037101(-)$1	1	1	7	17.9999
.(((((	chr3:194896929-194897178(-)$1	1	101	107	17.9999
.(((..	chr17:70535557-70535813(-)$1	1	100	106	17.9999
(((.((	chr12:125270544-125270796(-)$1	1	76	82	17.9999
.(((((	chr1:2340438-2340741(-)$1	1	11	17	17.9999
(((...	chr13:111314432-111314684(-)$1	1	34	40	17.9999
((((.(	chr1:44048844-44049091(+)$1	1	100	106	17.9999
))))))	chr17:42399121-42399372(-)$1	1	98	104	17.9999
))))))	chr11:859046-859318(-)$1	1	122	128	17.9999
(((...	chr9:131583512-131583781(-)$1	1	105	111	17.9999
))).))	chr19:17688420-17688711(+)$1	1	90	96	17.9999
.(((((	chr2:130920586-130920820(-)$1	1	0	6	17.9999
(((..(	chr11:65190407-65190614(+)$1	1	46	52	17.9999
.)))..	chr20:36014878-36015136(+)$1	1	67	73	17.9999
.(((..	chr17:15372817-15373116(-)$1	1	133	139	17.9999
((((((	chr7:130706018-130706279(-)$1	1	29	35	17.9999
(.((.(	chr12:7024416-7024691(+)$1	1	26	32	17.9999
(((.((	chr3:176914242-176914541(-)$1	1	118	124	17.9999
)((..(	chr7:891264-891504(+)$1	1	26	32	17.9999
(.(((.	chr16:29281825-29282119(+)$1	1	44	50	17.9999
).)).)	chr20:62592478-62592742(-)$1	1	178	184	17.9999
(....)	chr1:44049013-44049269(+)$1	1	23	29	17.9999
.)))))	chr20:23391947-23392227(-)$1	1	127	133	17.9999
.(((((	chr16:30932120-30932410(-)$1	1	113	119	17.9999

#PSSM
U : 0.86	u : 0.13	
G : 0.86	g : 0.13	
C : 0.86	c : 0.13	
A : 0.86	a : 0.13	
U : 0.86	u : 0.13	
G : 0.86	g : 0.13	

#score	1169.9999999999995
#seq	65
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_transcript_m3_run2.nuc.txt

#NT
GGUGG	chr19:939740-939999(+)$1	259	106	111	14.9999
GGUGG	chr3:52020072-52020336(+)$1	264	162	167	14.9999
GGUGG	chr8:134269045-134269280(-)$1	235	31	36	14.9999
ggugg	chr17:75304806-75305060(+)$1	254	39	44	14.9999
GGUGG	chr4:1348087-1348403(+)$1	316	41	46	14.9999
GGUGG	chr6:41529872-41530155(+)$1	283	98	103	14.9999
GGUGG	chr2:236476323-236476619(+)$1	296	33	38	14.9999
GGUGG	chrX:77380550-77380805(+)$1	255	58	63	14.9999
GGUGG	chr9:116971663-116971887(+)$1	224	213	218	14.9999
ggugg	chr7:100137198-100137436(+)$1	238	45	50	14.9999
GGUGG	chr2:219268847-219269118(+)$1	271	177	182	14.9999
GGUGG	chr19:1429976-1430303(+)$1	327	243	248	14.9999
GGUGG	chr16:50583727-50583985(+)$1	258	70	75	14.9999
GGUGG	chr11:66394086-66394330(+)$1	244	97	102	14.9999
GGUGG	chr17:7476842-7477067(+)$1	225	84	89	14.9999
GGUGG	chr3:133472452-133472688(+)$1	236	66	71	14.9999
GGUGG	chr10:97388172-97388418(-)$1	246	44	49	14.9999
GGUGG	chr20:3199402-3199650(+)$1	248	55	60	14.9999
GGUGG	chr16:30014408-30014655(+)$1	247	89	94	14.9999
GGUGG	chr1:235807553-235807800(-)$1	247	80	85	14.9999
GGUGG	chr10:102758867-102759139(+)$1	272	159	164	14.9999
GGUGG	chr17:7123741-7124002(+)$1	261	126	131	14.9999
GGUGG	chrX:151128422-151128682(-)$1	260	185	190	14.9999
GGUGG	chr9:99380190-99380455(-)$1	265	104	109	14.9999
GGUGG	chr16:67226459-67226728(+)$1	269	148	153	14.9999
ggugg	chr3:48664955-48665191(-)$1	236	129	134	14.9999
GGUGG	chr16:85696750-85697022(+)$1	272	255	260	14.9999
GGUGG	chr11:65194681-65194903(+)$1	222	193	198	14.9999
GGUGG	chr18:683287-683558(-)$1	271	81	86	14.9999
GGUGG	chr2:11750622-11750897(+)$1	275	145	150	14.9999
GGUGG	chr20:60629540-60629799(-)$1	259	98	103	14.9999
GGUGG	chr17:77966385-77966676(-)$1	291	244	249	14.9999
GGUGG	chr16:50642308-50642597(+)$1	289	91	96	14.9999
ggugg	chr21:47563067-47563308(-)$1	241	66	71	14.9999
GGUGG	chr12:6857686-6857932(-)$1	246	18	23	14.9999
ggugG	chr20:33591676-33591945(-)$1	269	80	85	14.9999
GGUGG	chr11:72534161-72534420(+)$1	259	92	97	14.9999
GGUGG	chr17:80050791-80051062(-)$1	271	109	114	14.9999
GGUGG	chr1:156351647-156351924(+)$1	277	162	167	14.9999
GGUGG	chr11:61634375-61634656(+)$1	281	56	61	14.9999
GGUGG	chr17:80050606-80050844(-)$1	238	71	76	14.9999
GGUGG	chr20:44986077-44986328(-)$1	251	70	75	14.9999
GGUGG	chr17:27074559-27074843(+)$1	284	239	244	14.9999
GGUGG	chr16:8961246-8961562(-)$1	316	103	108	14.9999
GGUGG	chr19:2228265-2228507(+)$1	242	136	141	14.9999
GGUGG	chr19:959866-960169(+)$1	303	114	119	14.9999
GGUGG	chr19:47878982-47879259(+)$1	277	21	26	14.9999
GGUGG	chr2:219265770-219266065(+)$1	295	90	95	14.9999
GGUGG	chr17:79966586-79966812(+)$1	226	134	139	14.9999
ggugg	chr20:36028346-36028598(+)$1	252	95	100	14.9999
GGUGG	chr19:879201-879466(-)$1	265	41	46	14.9999
GGUGG	chr3:53853339-53853615(-)$1	276	64	69	14.9999
GGUGG	chr17:78311201-78311445(+)$1	244	12	17	14.9999
GGUGG	chr11:62566196-62566452(-)$1	256	97	102	14.9999
gGUGG	chr17:70535125-70535406(-)$1	281	108	113	14.9999
GGUGG	chr10:5014615-5014855(+)$1	240	160	165	14.9999
ggUGG	chr19:878359-878610(-)$1	251	55	60	14.9999
GGUGG	chr6:31727022-31727286(+)$1	264	103	108	14.9999
GGUGG	chr5:176729178-176729475(-)$1	297	103	108	14.9999
GGUGG	chr2:242611425-242611694(+)$1	269	133	138	14.9999
GGUGG	chr22:38209297-38209542(+)$1	245	131	136	14.9999
GGUGG	chr8:144675849-144676128(-)$1	279	126	131	14.9999
GGUGG	chr16:50642204-50642449(+)$1	245	195	200	14.9999
GGUGG	chr11:61109873-61110111(+)$1	238	97	102	14.9999

#otherMatches

#Struct PSSM
hhhhh	chr16:50663907-50664158(+)$1	251	221	226	14.9999
}FFFF	chr19:939740-939999(+)$1	259	106	111	14.9999
HHHHH	chr3:52020072-52020336(+)$1	264	162	167	14.9999
ddddd	chr8:134269045-134269280(-)$1	235	31	36	14.9999
eeeee	chr17:75304806-75305060(+)$1	254	39	44	14.9999
ggggg	chr4:1348087-1348403(+)$1	316	41	46	14.9999
:::::	chr6:41529872-41530155(+)$1	283	98	103	14.9999
DDDdd	chr2:236476323-236476619(+)$1	296	33	38	14.9999
FF{DD	chrX:77380550-77380805(+)$1	255	58	63	14.9999
=====	chr9:116971663-116971887(+)$1	224	213	218	14.9999
[ccc#	chr7:100137198-100137436(+)$1	238	45	50	14.9999
:ccc[	chr2:219268847-219269118(+)$1	271	177	182	14.9999
dd[cc	chr19:1429976-1430303(+)$1	327	243	248	14.9999
=====	chr16:50583727-50583985(+)$1	258	70	75	14.9999
cc[ee	chr11:66394086-66394330(+)$1	244	97	102	14.9999
gg[a[	chr17:7476842-7477067(+)$1	225	84	89	14.9999
hhhhh	chr3:133472452-133472688(+)$1	236	66	71	14.9999
dd]bb	chr10:97388172-97388418(-)$1	246	44	49	14.9999
cc"""	chr20:3199402-3199650(+)$1	248	55	60	14.9999
33bb]	chr16:30014408-30014655(+)$1	247	89	94	14.9999
=====	chr1:235807553-235807800(-)$1	247	80	85	14.9999
4444c	chr10:102758867-102759139(+)$1	272	159	164	14.9999
cccqq	chr17:7123741-7124002(+)$1	261	126	131	14.9999
44ccc	chrX:151128422-151128682(-)$1	260	185	190	14.9999
EEEEE	chr9:99380190-99380455(-)$1	265	104	109	14.9999
qdddd	chr16:67226459-67226728(+)$1	269	148	153	14.9999
goooo	chr3:48664955-48665191(-)$1	236	129	134	14.9999
EEEEE	chr16:85696750-85697022(+)$1	272	255	260	14.9999
nccc2	chr11:65194681-65194903(+)$1	222	193	198	14.9999
llldd	chr18:683287-683558(-)$1	271	81	86	14.9999
e[ddd	chr2:11750622-11750897(+)$1	275	145	150	14.9999
##bb[	chr20:60629540-60629799(-)$1	259	98	103	14.9999
}CCC~	chr17:77966385-77966676(-)$1	291	244	249	14.9999
hhhhh	chr16:50642308-50642597(+)$1	289	91	96	14.9999
hhhhh	chr21:47563067-47563308(-)$1	241	66	71	14.9999
HH{EE	chr12:6857686-6857932(-)$1	246	18	23	14.9999
::ddd	chr20:33591676-33591945(-)$1	269	80	85	14.9999
=====	chr11:72534161-72534420(+)$1	259	92	97	14.9999
ddiii	chr17:80050791-80051062(-)$1	271	109	114	14.9999
ggggg	chr1:156351647-156351924(+)$1	277	162	167	14.9999
hhhhh	chr11:61634375-61634656(+)$1	281	56	61	14.9999
dddd]	chr17:80050606-80050844(-)$1	238	71	76	14.9999
hhhhh	chr20:44986077-44986328(-)$1	251	70	75	14.9999
JJJJJ	chr17:27074559-27074843(+)$1	284	239	244	14.9999
DDDD{	chr16:8961246-8961562(-)$1	316	103	108	14.9999
::FFF	chr19:2228265-2228507(+)$1	242	136	141	14.9999
EEEEE	chr19:959866-960169(+)$1	303	114	119	14.9999
miiii	chr19:47878982-47879259(+)$1	277	21	26	14.9999
GGGGM	chr2:219265770-219266065(+)$1	295	90	95	14.9999
c]eee	chr17:79966586-79966812(+)$1	226	134	139	14.9999
eeeee	chr20:36028346-36028598(+)$1	252	95	100	14.9999
eee""	chr19:879201-879466(-)$1	265	41	46	14.9999
dddoo	chr3:53853339-53853615(-)$1	276	64	69	14.9999
ff!!c	chr17:78311201-78311445(+)$1	244	12	17	14.9999
{EEEE	chr11:62566196-62566452(-)$1	256	97	102	14.9999
22iii	chr17:70535125-70535406(-)$1	281	108	113	14.9999
gg[a[	chr10:5014615-5014855(+)$1	240	160	165	14.9999
[dddd	chr19:878359-878610(-)$1	251	55	60	14.9999
d[ddd	chr6:31727022-31727286(+)$1	264	103	108	14.9999
d]bbf	chr5:176729178-176729475(-)$1	297	103	108	14.9999
dd]ee	chr2:242611425-242611694(+)$1	269	133	138	14.9999
eee[c	chr22:38209297-38209542(+)$1	245	131	136	14.9999
fff[f	chr8:144675849-144676128(-)$1	279	126	131	14.9999
ftttt	chr16:50642204-50642449(+)$1	245	195	200	14.9999
FFFFF	chr11:61109873-61110111(+)$1	238	97	102	14.9999

#DB
)))))	chr16:50663907-50664158(+)$1	1	221	226	14.9999
.))))	chr19:939740-939999(+)$1	1	106	111	14.9999
(((((	chr3:52020072-52020336(+)$1	1	162	167	14.9999
(((((	chr8:134269045-134269280(-)$1	1	31	36	14.9999
(((((	chr17:75304806-75305060(+)$1	1	39	44	14.9999
(((((	chr4:1348087-1348403(+)$1	1	41	46	14.9999
.....	chr6:41529872-41530155(+)$1	1	98	103	14.9999
(((((	chr2:236476323-236476619(+)$1	1	33	38	14.9999
((.((	chrX:77380550-77380805(+)$1	1	58	63	14.9999
)))))	chr9:116971663-116971887(+)$1	1	213	218	14.9999
.(((.	chr7:100137198-100137436(+)$1	1	45	50	14.9999
.(((.	chr2:219268847-219269118(+)$1	1	177	182	14.9999
((.((	chr19:1429976-1430303(+)$1	1	243	248	14.9999
)))))	chr16:50583727-50583985(+)$1	1	70	75	14.9999
((.((	chr11:66394086-66394330(+)$1	1	97	102	14.9999
((.(.	chr17:7476842-7477067(+)$1	1	84	89	14.9999
(((((	chr3:133472452-133472688(+)$1	1	66	71	14.9999
)).))	chr10:97388172-97388418(-)$1	1	44	49	14.9999
((...	chr20:3199402-3199650(+)$1	1	55	60	14.9999
..)).	chr16:30014408-30014655(+)$1	1	89	94	14.9999
)))))	chr1:235807553-235807800(-)$1	1	80	85	14.9999
....)	chr10:102758867-102759139(+)$1	1	159	164	14.9999
(((..	chr17:7123741-7124002(+)$1	1	126	131	14.9999
..)))	chrX:151128422-151128682(-)$1	1	185	190	14.9999
(((((	chr9:99380190-99380455(-)$1	1	104	109	14.9999
.))))	chr16:67226459-67226728(+)$1	1	148	153	14.9999
(....	chr3:48664955-48665191(-)$1	1	129	134	14.9999
)))))	chr16:85696750-85697022(+)$1	1	255	260	14.9999
.))).	chr11:65194681-65194903(+)$1	1	193	198	14.9999
...))	chr18:683287-683558(-)$1	1	81	86	14.9999
(.(((	chr2:11750622-11750897(+)$1	1	145	150	14.9999
..((.	chr20:60629540-60629799(-)$1	1	98	103	14.9999
.))).	chr17:77966385-77966676(-)$1	1	244	249	14.9999
(((((	chr16:50642308-50642597(+)$1	1	91	96	14.9999
(((((	chr21:47563067-47563308(-)$1	1	66	71	14.9999
((.((	chr12:6857686-6857932(-)$1	1	18	23	14.9999
..(((	chr20:33591676-33591945(-)$1	1	80	85	14.9999
)))))	chr11:72534161-72534420(+)$1	1	92	97	14.9999
)))))	chr17:80050791-80051062(-)$1	1	109	114	14.9999
)))))	chr1:156351647-156351924(+)$1	1	162	167	14.9999
)))))	chr11:61634375-61634656(+)$1	1	56	61	14.9999
)))).	chr17:80050606-80050844(-)$1	1	71	76	14.9999
(((((	chr20:44986077-44986328(-)$1	1	70	75	14.9999
)))))	chr17:27074559-27074843(+)$1	1	239	244	14.9999
((((.	chr16:8961246-8961562(-)$1	1	103	108	14.9999
..(((	chr19:2228265-2228507(+)$1	1	136	141	14.9999
(((((	chr19:959866-960169(+)$1	1	114	119	14.9999
.))))	chr19:47878982-47879259(+)$1	1	21	26	14.9999
((((.	chr2:219265770-219266065(+)$1	1	90	95	14.9999
).)))	chr17:79966586-79966812(+)$1	1	134	139	14.9999
(((((	chr20:36028346-36028598(+)$1	1	95	100	14.9999
(((..	chr19:879201-879466(-)$1	1	41	46	14.9999
(((..	chr3:53853339-53853615(-)$1	1	64	69	14.9999
((..(	chr17:78311201-78311445(+)$1	1	12	17	14.9999
.((((	chr11:62566196-62566452(-)$1	1	97	102	14.9999
..)))	chr17:70535125-70535406(-)$1	1	108	113	14.9999
((.(.	chr10:5014615-5014855(+)$1	1	160	165	14.9999
.((((	chr19:878359-878610(-)$1	1	55	60	14.9999
(.(((	chr6:31727022-31727286(+)$1	1	103	108	14.9999
).)))	chr5:176729178-176729475(-)$1	1	103	108	14.9999
)).))	chr2:242611425-242611694(+)$1	1	133	138	14.9999
(((.(	chr22:38209297-38209542(+)$1	1	131	136	14.9999
(((.(	chr8:144675849-144676128(-)$1	1	126	131	14.9999
(....	chr16:50642204-50642449(+)$1	1	195	200	14.9999
(((((	chr11:61109873-61110111(+)$1	1	97	102	14.9999

#PSSM
G : 0.87	g : 0.12	
G : 0.89	g : 0.10	
U : 0.90	u : 0.09	
G : 0.90	g : 0.09	
G : 0.92	g : 0.07	

#score	974.9999999999995
#seq	65
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_CDS_m2_run2.nuc.txt

#NT
CACCGCCUGGGGCCCCCCAAGCGGCCGCCUCGGAAGCUGGGCCCCACGGAAGGCCGGCCGCAGCUGAAGGGUGUGGUCCUGUGCACGUUUACCCGCAAGCCGAAGAAGCCCAACUCAGCCAAUCGCAAGUGCUGUCGAGUGCGGCUCAGCACUGGCCGCGAGGCCGUCUGCUUCAUCCCUGGGGAGGGCCACACCCUGCAGGAGCACCAGAUUGUCCUUGUGGAGGGCGGCCGCACCCAGGACCUGCCAGGCGUCAAGCUCACCGUUGUGCGUGGCAAGUACGACUGUGGCCACGUGCAGAAGAAGUGACGGCUGGGGGCACAGUGGGCUG	chr19:39423008-39423378(+)$1	370	23	354	438.0000

#otherMatches

#Struct PSSM
gccc!!a[gggggggbb[a[bb[iiiiiiiiiooooooiiiiiiiii]bb]a22bb22ggggggg]a22ccc:::cccmmmmcccEEEEENNNNNFFFFFF===========[ffffff[a####bbnnnnnbb4444a]ffffff]===========gggggggmmmmggggggg:FFFFFFZZZEEEEEDDDDCCCdddd[ccc[ggggggg[ffffff[ccc[bb$$$$$iiiiiiiiiccc[eeeee####dddd$$$$$cccmmmmcccdddd333eeeeeccc7777777iiiiiiiiibb]ccc]ffffffggggggg]ccc22	chr2:27308712-27309076(+)$1	364	26	357	438.0000
c[ccccccggggggg####ccc!!ccclllccc22cccggggggg55555ccc]ccc22ccc]ccc22ccc]ffffff]bbDDDDOOOOOOCCCLLLDDDD{AMMMMDDDDLLLFFFFFF:::::::ffffffddddmmmmdddd22ffffffddddmmmmddddCCC{EEEEE:::ffffff"""dddd"""dddd[bb[ccc[bboooooobb]ccc]bb]dddd]dddd333ffffff::dddd"""dddd"""bb[ccc[gggggggpppppppggggggg]cccbb]dddddddd::EEEEECCCFFFFFFDDDD~~~~A}DDDDC	chr19:39423008-39423378(+)$1	370	23	354	438.0000

#DB
)(((..(.(((((((((.(.((.(((((((((......))))))))).)).)..))..))))))).)..)))...(((....)))(((((.....(((((((((((((((((.((((((.(....((.....))....).)))))).)))))))))))(((((((....))))))).))))))...))))))))))))((((.(((.(((((((.((((((.(((.((.....((((((((((((.(((((....((((.....(((....)))))))...)))))))).......))))))))))).))).))))))))))))).)))..	chr2:27308712-27309076(+)$1	1	26	357	438.0000
(.(((((((((((((....(((..(((...)))..)))))))))).....))).)))..))).)))..))).)))))).))((((......(((...((((.(....((((...((((((.......((((((((((....))))..))))))((((....))))(((.(((((...((((((...((((...((((.((.(((.((......)).))).)).)))).))))...))))))..((((...((((...((.(((.(((((((.......))))))).))))).))))))))..))))))))))))))))))....).)))))	chr19:39423008-39423378(+)$1	1	23	354	438.0000

#PSSM
C : 1.00	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
A : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
U : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
C : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
C : 0.50	A : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
A : 0.50	C : 0.50	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	

#score	876.0
#seq	2
#width	331
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_transcript_m2_run1.nuc.txt

#NT
GGCCUGGG	chr17:79133491-79133777(-)$1	286	124	132	15.9285
GAGCUGGG	chr16:88817801-88818087(-)$1	286	121	129	15.7142
GGGUUGGG	chr17:16284558-16284818(+)$1	260	17	25	16.3571
GGUCUGGG	chr20:35203009-35203309(+)$1	300	187	195	15.7142
GGGCUGGG	chr19:1288679-1288943(+)$1	264	176	184	20.2857
gggauggg	chr16:978547-978794(-)$1	247	25	33	16.2857
GGGCUGGG	chr22:50739148-50739424(-)$1	276	4	12	20.2857
GGCCUGGG	chr9:139249869-139250214(+)$1	345	192	200	15.9285
GGCCUGGG	chr7:231394-231693(+)$1	299	195	203	15.9285
GGGCUGGC	chr1:3485210-3485439(-)$1	229	179	187	15.9285
GGGGUGGG	chr17:36761413-36761666(-)$1	253	14	22	16.6428
UGGCUGGG	chr4:103748171-103748400(-)$1	229	51	59	16.0714
AGGCUGGG	chr16:1427733-1427990(-)$1	257	84	92	15.7857
GGGCUGGG	chr2:128785125-128785408(-)$1	283	74	82	20.2857
GGGCUGGA	chr7:2678705-2679006(+)$1	301	80	88	15.7142
gggcgggg	chr1:156252134-156252390(-)$1	256	48	56	16.4999
GGCCUGGG	chr9:139719148-139719403(+)$1	255	95	103	15.9285
GGGUUGGG	chr12:133113892-133114148(+)$1	256	96	104	16.3571
GGGCUUGG	chr9:137262706-137262961(+)$1	255	123	131	15.9285
GGGCUGUG	chr14:105340684-105340954(+)$1	270	164	172	15.7142
GGGGUGGG	chr19:56152185-56152431(+)$1	246	118	126	16.6428
GGGUUGGG	chr11:64073423-64073700(+)$1	277	33	41	16.3571
GGGCAGGG	chr17:75370279-75370541(+)$1	262	49	57	16.4999
gggcgggg	chr10:72575966-72576241(+)$1	275	39	47	16.4999
gggguggg	chr10:120967156-120967382(+)$1	226	4	12	16.6428
GGGCUCGG	chr16:89990764-89991038(+)$1	274	32	40	15.8571
GGGCAGGG	chr6:166795559-166795875(-)$1	316	176	184	16.4999
UGGCUGGG	chr17:80196760-80196991(+)$1	231	93	101	16.0714
GGGCUGGG	chr17:73997244-73997563(+)$1	319	4	12	20.2857
GGGGUGGG	chr1:156716836-156717132(-)$1	296	21	29	16.6428
GGGCAGGG	chr11:844391-844627(+)$1	236	227	235	16.4999
gggcgggg	chr16:431505-431769(-)$1	264	116	124	16.4999
UGGCUGGG	chr5:176856307-176856631(+)$1	324	67	75	16.0714
GGGCUGGG	chr7:751788-752072(-)$1	284	34	42	20.2857
GGGCUGUG	chr16:89990450-89990697(+)$1	247	104	112	15.7142
GGGGUGGG	chr1:154917064-154917357(-)$1	293	142	150	16.6428
gggcuggc	chr16:69796255-69796567(+)$1	312	68	76	15.9285
GGGCCGGG	chr12:7036971-7037304(+)$1	333	60	68	16.2857
GAGCUGGG	chr1:3485239-3485490(-)$1	251	30	38	15.7142
GGGCUGGC	chr1:236140134-236140348(-)$1	214	131	139	15.9285
GGGGUGGG	chr20:60628979-60629229(-)$1	250	105	113	16.6428
GGGCUGGG	chr2:240023469-240023744(-)$1	275	60	68	20.2857
gggcucgg	chr8:61592878-61593163(+)$1	285	2	10	15.8571
GGGCUUGG	chr14:105339368-105339620(+)$1	252	112	120	15.9285
GAGCUGGG	chr1:999572-999860(+)$1	288	224	232	15.7142
UGGCUGGG	chr9:139944598-139944844(-)$1	246	92	100	16.0714
GGGCUGGG	chr7:5436559-5436882(-)$1	323	136	144	20.2857
GGGCAGGG	chr14:105904423-105904686(+)$1	263	110	118	16.4999
GGGCUGGG	chr7:5434254-5434491(-)$1	237	202	210	20.2857
GGGCUGGG	chr10:134422230-134422530(+)$1	300	94	102	20.2857
GGGCUGGG	chr2:241563333-241563591(+)$1	258	132	140	20.2857
GGGCUGGC	chr5:180651183-180651430(+)$1	247	45	53	15.9285
GGGCUAGG	chr20:25676685-25676964(-)$1	279	20	28	15.7857
GGGCGGGG	chr16:88730173-88730475(+)$1	302	214	222	16.4999
GGGCUGGG	chr16:88562636-88562907(+)$1	271	64	72	20.2857
GGGCUGGG	chr9:116984630-116984901(+)$1	271	47	55	20.2857
GGGCUGGG	chr3:61548059-61548287(+)$1	228	212	220	20.2857
GGGCUUGG	chr1:2165087-2165327(+)$1	240	116	124	15.9285
gggcaggg	chr19:953993-954277(+)$1	284	101	109	16.4999
GGGCUGGG	chr17:79884344-79884592(-)$1	248	236	244	20.2857
GGGAUGGG	chr19:1173238-1173493(-)$1	255	68	76	16.2857
GGGCUGGG	chr19:803382-803640(+)$1	258	13	21	20.2857
GGGCUGGG	chr22:45130676-45130980(+)$1	304	63	71	20.2857
GGGCUGGG	chr17:75429250-75429487(+)$1	237	211	219	20.2857
GGGCUGUG	chr16:1428214-1428466(-)$1	252	206	214	15.7142
GGGCGGGG	chr19:17514068-17514353(-)$1	285	57	65	16.4999
gggccggg	chr8:145027663-145027912(-)$1	249	30	38	16.2857
GGGGUGGG	chr19:42757595-42757852(-)$1	257	25	33	16.6428
UGGCUGGG	chr8:145547205-145547467(-)$1	262	95	103	16.0714

#otherMatches

#Struct PSSM
bb]eeeee	chr6:16761012-16761313(-)$1	301	107	115	20.2857
dddd]ddd	chr17:79133491-79133777(-)$1	286	124	132	15.9285
c!!ggggg	chr16:88817801-88818087(-)$1	286	121	129	15.7142
ggggggg!	chr17:16284558-16284818(+)$1	260	17	25	16.3571
!!======	chr20:35203009-35203309(+)$1	300	187	195	15.7142
ddd]eeee	chr19:1288679-1288943(+)$1	264	176	184	20.2857
####bb[d	chr16:978547-978794(-)$1	247	25	33	16.2857
:FFFFFFE	chr22:50739148-50739424(-)$1	276	4	12	20.2857
eeeee]cc	chr9:139249869-139250214(+)$1	345	192	200	15.9285
"ccc[fff	chr7:231394-231693(+)$1	299	195	203	15.9285
FFFFFFff	chr1:3485210-3485439(-)$1	229	179	187	15.9285
))))))))	chr17:36761413-36761666(-)$1	253	14	22	16.6428
IIIIIIII	chr4:103748171-103748400(-)$1	229	51	59	16.0714
c:CCCAKK	chr16:1427733-1427990(-)$1	257	84	92	15.7857
fff]dddd	chr2:128785125-128785408(-)$1	283	74	82	20.2857
::ddddnn	chr7:2678705-2679006(+)$1	301	80	88	15.7142
FFFccc!!	chr1:156252134-156252390(-)$1	256	48	56	16.4999
G{BB{GGG	chr9:139719148-139719403(+)$1	255	95	103	15.9285
FFFFF}DD	chr12:133113892-133114148(+)$1	256	96	104	16.3571
meeeee99	chr9:137262706-137262961(+)$1	255	123	131	15.9285
gggbb:::	chr14:105340684-105340954(+)$1	270	164	172	15.7142
IIIIIhhh	chr19:56152185-56152431(+)$1	246	118	126	16.6428
hhhhhhhh	chr11:64073423-64073700(+)$1	277	33	41	16.3571
gggggggf	chr17:75370279-75370541(+)$1	262	49	57	16.4999
a[bb"""c	chr10:72575966-72576241(+)$1	275	39	47	16.4999
FFFFFF:H	chr10:120967156-120967382(+)$1	226	4	12	16.6428
""ddddnn	chr16:89990764-89991038(+)$1	274	32	40	15.8571
ccc]cccb	chr6:166795559-166795875(-)$1	316	176	184	16.4999
hhhh[eee	chr17:80196760-80196991(+)$1	231	93	101	16.0714
CKKEEEEE	chr17:73997244-73997563(+)$1	319	4	12	20.2857
ppppppdd	chr1:156716836-156717132(-)$1	296	21	29	16.6428
GGGGGG::	chr11:844391-844627(+)$1	236	227	235	16.4999
HHHHHHEE	chr16:431505-431769(-)$1	264	116	124	16.4999
eeee]a]f	chr5:176856307-176856631(+)$1	324	67	75	16.0714
oooooobb	chr7:751788-752072(-)$1	284	34	42	20.2857
333hhhhh	chr16:89990450-89990697(+)$1	247	104	112	15.7142
ddd!!ggg	chr1:154917064-154917357(-)$1	293	142	150	16.6428
a]ccc]ii	chr16:69796255-69796567(+)$1	312	68	76	15.9285
hhhhh[dd	chr12:7036971-7037304(+)$1	333	60	68	16.2857
oddddhhh	chr1:3485239-3485490(-)$1	251	30	38	15.7142
iiiiiii]	chr1:236140134-236140348(-)$1	214	131	139	15.9285
:eeeeedd	chr20:60628979-60629229(-)$1	250	105	113	16.6428
:bbeeeee	chr2:240023469-240023744(-)$1	275	60	68	20.2857
EEEE{AKK	chr8:61592878-61593163(+)$1	285	2	10	15.8571
eeeee22e	chr14:105339368-105339620(+)$1	252	112	120	15.9285
d[a[eeee	chr1:999572-999860(+)$1	288	224	232	15.7142
ohhhhhhh	chr9:139944598-139944844(-)$1	246	92	100	16.0714
qqqqqqqq	chr7:5436559-5436882(-)$1	323	136	144	20.2857
eeee]ddd	chr14:105904423-105904686(+)$1	263	110	118	16.4999
b22ggggg	chr7:5434254-5434491(-)$1	237	202	210	20.2857
3ggggggg	chr10:134422230-134422530(+)$1	300	94	102	20.2857
hhhhhhhh	chr2:241563333-241563591(+)$1	258	132	140	20.2857
ndddd22c	chr5:180651183-180651430(+)$1	247	45	53	15.9285
eeee[fff	chr20:25676685-25676964(-)$1	279	20	28	15.7857
]ggggggg	chr16:88730173-88730475(+)$1	302	214	222	16.4999
dd:::GGG	chr16:88562636-88562907(+)$1	271	64	72	20.2857
nnnggggg	chr9:116984630-116984901(+)$1	271	47	55	20.2857
C}GGGGGG	chr3:61548059-61548287(+)$1	228	212	220	20.2857
dd]ccc]a	chr1:2165087-2165327(+)$1	240	116	124	15.9285
qqbb:A{A	chr19:953993-954277(+)$1	284	101	109	16.4999
CCC}EEEE	chr17:79884344-79884592(-)$1	248	236	244	20.2857
obb:::dd	chr19:1173238-1173493(-)$1	255	68	76	16.2857
{FFFFFF{	chr19:803382-803640(+)$1	258	13	21	20.2857
DDDJJJJJ	chr22:45130676-45130980(+)$1	304	63	71	20.2857
FFFFFEEE	chr17:75429250-75429487(+)$1	237	211	219	20.2857
ffffbbff	chr16:1428214-1428466(-)$1	252	206	214	15.7142
iiiiiii[	chr19:17514068-17514353(-)$1	285	57	65	16.4999
IIIIII::	chr8:145027663-145027912(-)$1	249	30	38	16.2857
:ggggggg	chr19:42757595-42757852(-)$1	257	25	33	16.6428
ddddd"""	chr8:145547205-145547467(-)$1	262	95	103	16.0714

#DB
)).)))))	chr6:16761012-16761313(-)$1	1	107	115	20.2857
)))).)))	chr17:79133491-79133777(-)$1	1	124	132	15.9285
(..(((((	chr16:88817801-88818087(-)$1	1	121	129	15.7142
(((((((.	chr17:16284558-16284818(+)$1	1	17	25	16.3571
..((((((	chr20:35203009-35203309(+)$1	1	187	195	15.7142
))).))))	chr19:1288679-1288943(+)$1	1	176	184	20.2857
....((.(	chr16:978547-978794(-)$1	1	25	33	16.2857
.(((((((	chr22:50739148-50739424(-)$1	1	4	12	20.2857
))))).))	chr9:139249869-139250214(+)$1	1	192	200	15.9285
.(((.(((	chr7:231394-231693(+)$1	1	195	203	15.9285
))))))((	chr1:3485210-3485439(-)$1	1	179	187	15.9285
........	chr17:36761413-36761666(-)$1	1	14	22	16.6428
((((((((	chr4:103748171-103748400(-)$1	1	51	59	16.0714
).((((..	chr16:1427733-1427990(-)$1	1	84	92	15.7857
))).))))	chr2:128785125-128785408(-)$1	1	74	82	20.2857
..((((..	chr7:2678705-2679006(+)$1	1	80	88	15.7142
((((((..	chr1:156252134-156252390(-)$1	1	48	56	16.4999
(.((.(((	chr9:139719148-139719403(+)$1	1	95	103	15.9285
))))).))	chr12:133113892-133114148(+)$1	1	96	104	16.3571
.)))))..	chr9:137262706-137262961(+)$1	1	123	131	15.9285
)))))...	chr14:105340684-105340954(+)$1	1	164	172	15.7142
((((((((	chr19:56152185-56152431(+)$1	1	118	126	16.6428
((((((((	chr11:64073423-64073700(+)$1	1	33	41	16.3571
((((((((	chr17:75370279-75370541(+)$1	1	49	57	16.4999
(.((...(	chr10:72575966-72576241(+)$1	1	39	47	16.4999
((((((.(	chr10:120967156-120967382(+)$1	1	4	12	16.6428
..((((..	chr16:89990764-89991038(+)$1	1	32	40	15.8571
))).)))(	chr6:166795559-166795875(-)$1	1	176	184	16.4999
((((.(((	chr17:80196760-80196991(+)$1	1	93	101	16.0714
(..(((((	chr17:73997244-73997563(+)$1	1	4	12	20.2857
......))	chr1:156716836-156717132(-)$1	1	21	29	16.6428
))))))..	chr11:844391-844627(+)$1	1	227	235	16.4999
))))))))	chr16:431505-431769(-)$1	1	116	124	16.4999
)))).).)	chr5:176856307-176856631(+)$1	1	67	75	16.0714
......))	chr7:751788-752072(-)$1	1	34	42	20.2857
...)))))	chr16:89990450-89990697(+)$1	1	104	112	15.7142
(((..(((	chr1:154917064-154917357(-)$1	1	142	150	16.6428
).))).))	chr16:69796255-69796567(+)$1	1	68	76	15.9285
(((((.((	chr12:7036971-7037304(+)$1	1	60	68	16.2857
.))))(((	chr1:3485239-3485490(-)$1	1	30	38	15.7142
))))))).	chr1:236140134-236140348(-)$1	1	131	139	15.9285
.(((((((	chr20:60628979-60629229(-)$1	1	105	113	16.6428
.(((((((	chr2:240023469-240023744(-)$1	1	60	68	20.2857
((((.(..	chr8:61592878-61593163(+)$1	1	2	10	15.8571
)))))..)	chr14:105339368-105339620(+)$1	1	112	120	15.9285
(.(.((((	chr1:999572-999860(+)$1	1	224	232	15.7142
.)))))))	chr9:139944598-139944844(-)$1	1	92	100	16.0714
........	chr7:5436559-5436882(-)$1	1	136	144	20.2857
)))).)))	chr14:105904423-105904686(+)$1	1	110	118	16.4999
)..)))))	chr7:5434254-5434491(-)$1	1	202	210	20.2857
.)))))))	chr10:134422230-134422530(+)$1	1	94	102	20.2857
))))))))	chr2:241563333-241563591(+)$1	1	132	140	20.2857
.))))..)	chr5:180651183-180651430(+)$1	1	45	53	15.9285
((((.(((	chr20:25676685-25676964(-)$1	1	20	28	15.7857
.)))))))	chr16:88730173-88730475(+)$1	1	214	222	16.4999
))...(((	chr16:88562636-88562907(+)$1	1	64	72	20.2857
...)))))	chr9:116984630-116984901(+)$1	1	47	55	20.2857
).))))))	chr3:61548059-61548287(+)$1	1	212	220	20.2857
)).))).)	chr1:2165087-2165327(+)$1	1	116	124	15.9285
..)).(.(	chr19:953993-954277(+)$1	1	101	109	16.4999
))).))))	chr17:79884344-79884592(-)$1	1	236	244	20.2857
.))...((	chr19:1173238-1173493(-)$1	1	68	76	16.2857
.((((((.	chr19:803382-803640(+)$1	1	13	21	20.2857
))))))))	chr22:45130676-45130980(+)$1	1	63	71	20.2857
))))))))	chr17:75429250-75429487(+)$1	1	211	219	20.2857
))))))))	chr16:1428214-1428466(-)$1	1	206	214	15.7142
(((((((.	chr19:17514068-17514353(-)$1	1	57	65	16.4999
((((((..	chr8:145027663-145027912(-)$1	1	30	38	16.2857
.(((((((	chr19:42757595-42757852(-)$1	1	25	33	16.6428
(((((...	chr8:145547205-145547467(-)$1	1	95	103	16.0714

#PSSM
G : 0.77	g : 0.14	U : 0.07	A : 0.01	
G : 0.81	g : 0.14	A : 0.04	
G : 0.78	g : 0.14	C : 0.05	U : 0.01	
C : 0.71	c : 0.11	G : 0.08	U : 0.04	a : 0.01	g : 0.01	A : 0.01	
U : 0.75	u : 0.07	A : 0.05	g : 0.04	G : 0.02	C : 0.01	a : 0.01	c : 0.01	
G : 0.78	g : 0.12	U : 0.04	C : 0.01	c : 0.01	A : 0.01	
G : 0.81	g : 0.14	U : 0.04	
G : 0.79	g : 0.12	C : 0.04	A : 0.01	c : 0.01	

#score	1205.42857142857
#seq	70
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_CDS_m1_run1.nuc.txt

#NT
UGGC	chr3:53855573-53855820(-)$1	247	85	89	11.9999
UGGC	chr21:35169685-35170020(+)$1	335	22	26	11.9999
UGGC	chr17:36865633-36865844(+)$1	211	8	12	11.9999
UGGC	chr17:79073632-79073971(+)$1	339	64	68	11.9999
UGGC	chr9:139733264-139733487(+)$1	223	63	67	11.9999
UGGC	chr12:110384985-110385321(-)$1	336	275	279	11.9999
UGGC	chr4:103747560-103747845(-)$1	285	63	67	11.9999
UGGC	chr2:54858227-54858458(+)$1	231	66	70	11.9999
UGGC	chr10:113933416-113933672(-)$1	256	92	96	11.9999
UGGC	chr2:38977187-38977425(-)$1	238	5	9	11.9999
UGGC	chr12:53849678-53849885(+)$1	207	45	49	11.9999
UGGC	chr2:97877321-97877589(+)$1	268	118	122	11.9999
UGGC	chr19:8532318-8532535(+)$1	217	110	114	11.9999
UGGC	chr9:140074528-140074832(-)$1	304	0	4	11.9999
UGGC	chr2:54856806-54857025(+)$1	219	10	14	11.9999
UGGC	chr22:24445535-24445771(+)$1	236	191	195	11.9999
UGGC	chr9:139700913-139701130(+)$1	217	104	108	11.9999
UGGC	chr2:241494182-241494471(-)$1	289	105	109	11.9999
UGGC	chr17:38209665-38209919(-)$1	254	32	36	11.9999
UGGC	chr19:45571174-45571385(+)$1	211	0	4	11.9999
UGGC	chr16:89616833-89617111(+)$1	278	192	196	11.9999
UGGC	chr17:79987378-79987607(+)$1	229	18	22	11.9999
UGGC	chr12:14947491-14947748(-)$1	257	141	145	11.9999
UGGC	chr1:205500371-205500610(+)$1	239	153	157	11.9999
UGGC	chr1:95368921-95369181(-)$1	260	14	18	11.9999
UGGC	chr17:4858693-4858974(+)$1	281	77	81	11.9999
UGGC	chr2:120125687-120125917(+)$1	230	153	157	11.9999
UGGC	chr10:75563550-75563854(-)$1	304	28	32	11.9999
UGGC	chr6:44217050-44217258(+)$1	208	188	192	11.9999
UGGC	chr20:47850083-47850341(+)$1	258	3	7	11.9999
UGGC	chr2:128184598-128184829(+)$1	231	110	114	11.9999
UGGC	chr10:34690654-34690937(-)$1	283	79	83	11.9999
UGGC	chr3:50294122-50294383(+)$1	261	213	217	11.9999
UGGC	chr1:36921687-36921913(-)$1	226	152	156	11.9999
UGGC	chr8:28876258-28876510(+)$1	252	156	160	11.9999
UGGC	chrX:54011413-54011695(-)$1	282	88	92	11.9999
UGGC	chr17:2367472-2367742(-)$1	270	168	172	11.9999
UGGC	chr15:93518008-93518278(+)$1	270	184	188	11.9999
UGGC	chr3:47887545-47887810(+)$1	265	45	49	11.9999
UGGC	chr2:11337551-11337818(-)$1	267	0	4	11.9999
UGGC	chr12:6710827-6711032(-)$1	205	65	69	11.9999
UGGC	chr14:103806782-103806998(+)$1	216	82	86	11.9999
UGGC	chr14:102552015-102552286(-)$1	271	55	59	11.9999
UGGC	chr2:191161508-191161781(-)$1	273	45	49	11.9999
UGGC	chr19:10793112-10793429(+)$1	317	9	13	11.9999
UGGC	chr20:40118507-40118760(-)$1	253	113	117	11.9999
UGGC	chr2:192141560-192141855(+)$1	295	62	66	11.9999
UGGC	chr11:65829099-65829346(+)$1	247	228	232	11.9999
UGGC	chr1:113242814-113243055(+)$1	241	3	7	11.9999
UGGC	chr2:128050198-128050523(-)$1	325	109	113	11.9999
UGGC	chr9:117050882-117051088(+)$1	206	46	50	11.9999
UGGC	chr3:24184921-24185257(-)$1	336	84	88	11.9999
UGGC	chr11:67012581-67013000(+)$1	419	343	347	11.9999
uggc	chr20:34304561-34304766(-)$1	205	191	195	11.9999
UGGC	chr12:95867834-95868103(+)$1	269	45	49	11.9999
UGGC	chr1:93602157-93602467(+)$1	310	49	53	11.9999
UGGC	chr5:78697727-78697978(-)$1	251	132	136	11.9999
UGGC	chr15:101972087-101972304(-)$1	217	5	9	11.9999
UGGC	chr5:59995769-59996015(-)$1	246	46	50	11.9999
UGGC	chr7:74120620-74120846(+)$1	226	52	56	11.9999
UGGC	chr8:145651461-145651692(-)$1	231	160	164	11.9999
UGGC	chr2:85808622-85808859(+)$1	237	107	111	11.9999
UGGC	chr9:130931227-130931463(-)$1	236	9	13	11.9999
UGGC	chr20:43607021-43607288(+)$1	267	15	19	11.9999
UGGC	chr13:52544599-52544845(-)$1	246	50	54	11.9999
UGGC	chr2:39513978-39514205(-)$1	227	140	144	11.9999
UGGC	chr8:27467953-27468185(-)$1	232	221	225	11.9999
UGGC	chr3:15754935-15755239(-)$1	304	152	156	11.9999
UGGC	chr6:32088548-32088778(-)$1	230	2	6	11.9999
UGGC	chr11:65623509-65623775(-)$1	266	47	51	11.9999
UGGC	chr17:37686960-37687215(+)$1	255	74	78	11.9999
UGGC	chr1:35654756-35655014(-)$1	258	64	68	11.9999
UGGC	chr2:109398518-109398816(+)$1	298	188	192	11.9999
UGGC	chr2:207012154-207012383(-)$1	229	215	219	11.9999
UGGC	chr7:27832620-27832871(+)$1	251	131	135	11.9999
UGGC	chr15:40462722-40462977(+)$1	255	148	152	11.9999
UGGC	chr16:1552213-1552495(+)$1	282	38	42	11.9999
UGGC	chr7:148716155-148716386(-)$1	231	210	214	11.9999
UGGC	chr17:7480636-7480882(+)$1	246	6	10	11.9999
UGGC	chr16:2578027-2578250(+)$1	223	42	46	11.9999
UGGC	chr12:133248707-133249012(-)$1	305	249	253	11.9999
UGGC	chr11:64536876-64537140(-)$1	264	155	159	11.9999
UGGC	chr20:17608052-17608298(-)$1	246	32	36	11.9999

#otherMatches

#Struct PSSM
ffff	chr20:43547746-43547965(+)$1	219	132	136	11.9999
!bbf	chr3:53855573-53855820(-)$1	247	85	89	11.9999
mmcc	chr21:35169685-35170020(+)$1	335	22	26	11.9999
:ccc	chr17:36865633-36865844(+)$1	211	8	12	11.9999
dd""	chr17:79073632-79073971(+)$1	339	64	68	11.9999
eeee	chr9:139733264-139733487(+)$1	223	63	67	11.9999
bb22	chr12:110384985-110385321(-)$1	336	275	279	11.9999
d[cc	chr4:103747560-103747845(-)$1	285	63	67	11.9999
mmmf	chr2:54858227-54858458(+)$1	231	66	70	11.9999
GGGG	chr10:113933416-113933672(-)$1	256	92	96	11.9999
ffff	chr2:38977187-38977425(-)$1	238	5	9	11.9999
dddd	chr12:53849678-53849885(+)$1	207	45	49	11.9999
bb!!	chr2:97877321-97877589(+)$1	268	118	122	11.9999
:::J	chr19:8532318-8532535(+)$1	217	110	114	11.9999
:eee	chr9:140074528-140074832(-)$1	304	0	4	11.9999
DDDD	chr2:54856806-54857025(+)$1	219	10	14	11.9999
ffff	chr22:24445535-24445771(+)$1	236	191	195	11.9999
2ccc	chr9:139700913-139701130(+)$1	217	104	108	11.9999
2ccc	chr2:241494182-241494471(-)$1	289	105	109	11.9999
Cccc	chr17:38209665-38209919(-)$1	254	32	36	11.9999
:DDD	chr19:45571174-45571385(+)$1	211	0	4	11.9999
f]a3	chr16:89616833-89617111(+)$1	278	192	196	11.9999
::::	chr17:79987378-79987607(+)$1	229	18	22	11.9999
mfff	chr12:14947491-14947748(-)$1	257	141	145	11.9999
eeee	chr1:205500371-205500610(+)$1	239	153	157	11.9999
ffff	chr1:95368921-95369181(-)$1	260	14	18	11.9999
fmmm	chr17:4858693-4858974(+)$1	281	77	81	11.9999
eeee	chr2:120125687-120125917(+)$1	230	153	157	11.9999
EEEK	chr10:75563550-75563854(-)$1	304	28	32	11.9999
dddn	chr6:44217050-44217258(+)$1	208	188	192	11.9999
B{JJ	chr20:47850083-47850341(+)$1	258	3	7	11.9999
dd[b	chr2:128184598-128184829(+)$1	231	110	114	11.9999
===]	chr10:34690654-34690937(-)$1	283	79	83	11.9999
####	chr3:50294122-50294383(+)$1	261	213	217	11.9999
ddd:	chr1:36921687-36921913(-)$1	226	152	156	11.9999
e!!b	chr8:28876258-28876510(+)$1	252	156	160	11.9999
ffff	chrX:54011413-54011695(-)$1	282	88	92	11.9999
::::	chr17:2367472-2367742(-)$1	270	168	172	11.9999
CCCJ	chr15:93518008-93518278(+)$1	270	184	188	11.9999
[ccc	chr3:47887545-47887810(+)$1	265	45	49	11.9999
::cc	chr2:11337551-11337818(-)$1	267	0	4	11.9999
gggg	chr12:6710827-6711032(-)$1	205	65	69	11.9999
a22a	chr14:103806782-103806998(+)$1	216	82	86	11.9999
:fff	chr14:102552015-102552286(-)$1	271	55	59	11.9999
ffdd	chr2:191161508-191161781(-)$1	273	45	49	11.9999
gggg	chr19:10793112-10793429(+)$1	317	9	13	11.9999
:EEE	chr20:40118507-40118760(-)$1	253	113	117	11.9999
DDDD	chr2:192141560-192141855(+)$1	295	62	66	11.9999
uuuu	chr11:65829099-65829346(+)$1	247	228	232	11.9999
HHHH	chr1:113242814-113243055(+)$1	241	3	7	11.9999
IIII	chr2:128050198-128050523(-)$1	325	109	113	11.9999
oooo	chr9:117050882-117051088(+)$1	206	46	50	11.9999
eee4	chr3:24184921-24185257(-)$1	336	84	88	11.9999
====	chr11:67012581-67013000(+)$1	419	343	347	11.9999
dddd	chr20:34304561-34304766(-)$1	205	191	195	11.9999
llee	chr12:95867834-95868103(+)$1	269	45	49	11.9999
D{FF	chr1:93602157-93602467(+)$1	310	49	53	11.9999
===7	chr5:78697727-78697978(-)$1	251	132	136	11.9999
EEEE	chr15:101972087-101972304(-)$1	217	5	9	11.9999
KIII	chr5:59995769-59996015(-)$1	246	46	50	11.9999
ccdd	chr7:74120620-74120846(+)$1	226	52	56	11.9999
eeee	chr8:145651461-145651692(-)$1	231	160	164	11.9999
iii3	chr2:85808622-85808859(+)$1	237	107	111	11.9999
cccb	chr9:130931227-130931463(-)$1	236	9	13	11.9999
EEEE	chr20:43607021-43607288(+)$1	267	15	19	11.9999
c!!e	chr13:52544599-52544845(-)$1	246	50	54	11.9999
2ggg	chr2:39513978-39514205(-)$1	227	140	144	11.9999
eemm	chr8:27467953-27468185(-)$1	232	221	225	11.9999
e22d	chr3:15754935-15755239(-)$1	304	152	156	11.9999
EEEE	chr6:32088548-32088778(-)$1	230	2	6	11.9999
cCCC	chr11:65623509-65623775(-)$1	266	47	51	11.9999
mccc	chr17:37686960-37687215(+)$1	255	74	78	11.9999
22dd	chr1:35654756-35655014(-)$1	258	64	68	11.9999
iiqq	chr2:109398518-109398816(+)$1	298	188	192	11.9999
]bb]	chr2:207012154-207012383(-)$1	229	215	219	11.9999
mmmc	chr7:27832620-27832871(+)$1	251	131	135	11.9999
3bb]	chr15:40462722-40462977(+)$1	255	148	152	11.9999
$$ee	chr16:1552213-1552495(+)$1	282	38	42	11.9999
ccc]	chr7:148716155-148716386(-)$1	231	210	214	11.9999
gg[c	chr17:7480636-7480882(+)$1	246	6	10	11.9999
!ccc	chr16:2578027-2578250(+)$1	223	42	46	11.9999
DDD}	chr12:133248707-133249012(-)$1	305	249	253	11.9999
A{CC	chr11:64536876-64537140(-)$1	264	155	159	11.9999
b]ff	chr20:17608052-17608298(-)$1	246	32	36	11.9999

#DB
((((	chr20:43547746-43547965(+)$1	1	132	136	11.9999
.(((	chr3:53855573-53855820(-)$1	1	85	89	11.9999
..))	chr21:35169685-35170020(+)$1	1	22	26	11.9999
.(((	chr17:36865633-36865844(+)$1	1	8	12	11.9999
((..	chr17:79073632-79073971(+)$1	1	64	68	11.9999
))))	chr9:139733264-139733487(+)$1	1	63	67	11.9999
))..	chr12:110384985-110385321(-)$1	1	275	279	11.9999
(.((	chr4:103747560-103747845(-)$1	1	63	67	11.9999
...)	chr2:54858227-54858458(+)$1	1	66	70	11.9999
((((	chr10:113933416-113933672(-)$1	1	92	96	11.9999
((((	chr2:38977187-38977425(-)$1	1	5	9	11.9999
((((	chr12:53849678-53849885(+)$1	1	45	49	11.9999
((..	chr2:97877321-97877589(+)$1	1	118	122	11.9999
...)	chr19:8532318-8532535(+)$1	1	110	114	11.9999
.(((	chr9:140074528-140074832(-)$1	1	0	4	11.9999
((((	chr2:54856806-54857025(+)$1	1	10	14	11.9999
))))	chr22:24445535-24445771(+)$1	1	191	195	11.9999
.)))	chr9:139700913-139701130(+)$1	1	104	108	11.9999
.)))	chr2:241494182-241494471(-)$1	1	105	109	11.9999
((((	chr17:38209665-38209919(-)$1	1	32	36	11.9999
.(((	chr19:45571174-45571385(+)$1	1	0	4	11.9999
).).	chr16:89616833-89617111(+)$1	1	192	196	11.9999
....	chr17:79987378-79987607(+)$1	1	18	22	11.9999
.)))	chr12:14947491-14947748(-)$1	1	141	145	11.9999
))))	chr1:205500371-205500610(+)$1	1	153	157	11.9999
))))	chr1:95368921-95369181(-)$1	1	14	18	11.9999
(...	chr17:4858693-4858974(+)$1	1	77	81	11.9999
))))	chr2:120125687-120125917(+)$1	1	153	157	11.9999
(((.	chr10:75563550-75563854(-)$1	1	28	32	11.9999
(((.	chr6:44217050-44217258(+)$1	1	188	192	11.9999
(.((	chr20:47850083-47850341(+)$1	1	3	7	11.9999
((.(	chr2:128184598-128184829(+)$1	1	110	114	11.9999
))).	chr10:34690654-34690937(-)$1	1	79	83	11.9999
....	chr3:50294122-50294383(+)$1	1	213	217	11.9999
))).	chr1:36921687-36921913(-)$1	1	152	156	11.9999
(..(	chr8:28876258-28876510(+)$1	1	156	160	11.9999
))))	chrX:54011413-54011695(-)$1	1	88	92	11.9999
....	chr17:2367472-2367742(-)$1	1	168	172	11.9999
))))	chr15:93518008-93518278(+)$1	1	184	188	11.9999
.(((	chr3:47887545-47887810(+)$1	1	45	49	11.9999
..((	chr2:11337551-11337818(-)$1	1	0	4	11.9999
))))	chr12:6710827-6711032(-)$1	1	65	69	11.9999
)..)	chr14:103806782-103806998(+)$1	1	82	86	11.9999
.(((	chr14:102552015-102552286(-)$1	1	55	59	11.9999
))((	chr2:191161508-191161781(-)$1	1	45	49	11.9999
((((	chr19:10793112-10793429(+)$1	1	9	13	11.9999
.(((	chr20:40118507-40118760(-)$1	1	113	117	11.9999
((((	chr2:192141560-192141855(+)$1	1	62	66	11.9999
....	chr11:65829099-65829346(+)$1	1	228	232	11.9999
((((	chr1:113242814-113243055(+)$1	1	3	7	11.9999
((((	chr2:128050198-128050523(-)$1	1	109	113	11.9999
....	chr9:117050882-117051088(+)$1	1	46	50	11.9999
))).	chr3:24184921-24185257(-)$1	1	84	88	11.9999
((((	chr11:67012581-67013000(+)$1	1	343	347	11.9999
))))	chr20:34304561-34304766(-)$1	1	191	195	11.9999
..))	chr12:95867834-95868103(+)$1	1	45	49	11.9999
(.((	chr1:93602157-93602467(+)$1	1	49	53	11.9999
))).	chr5:78697727-78697978(-)$1	1	132	136	11.9999
((((	chr15:101972087-101972304(-)$1	1	5	9	11.9999
.(((	chr5:59995769-59996015(-)$1	1	46	50	11.9999
((((	chr7:74120620-74120846(+)$1	1	52	56	11.9999
))))	chr8:145651461-145651692(-)$1	1	160	164	11.9999
))).	chr2:85808622-85808859(+)$1	1	107	111	11.9999
((((	chr9:130931227-130931463(-)$1	1	9	13	11.9999
((((	chr20:43607021-43607288(+)$1	1	15	19	11.9999
(..(	chr13:52544599-52544845(-)$1	1	50	54	11.9999
.)))	chr2:39513978-39514205(-)$1	1	140	144	11.9999
((..	chr8:27467953-27468185(-)$1	1	221	225	11.9999
)..)	chr3:15754935-15755239(-)$1	1	152	156	11.9999
((((	chr6:32088548-32088778(-)$1	1	2	6	11.9999
)(((	chr11:65623509-65623775(-)$1	1	47	51	11.9999
.)))	chr17:37686960-37687215(+)$1	1	74	78	11.9999
..))	chr1:35654756-35655014(-)$1	1	64	68	11.9999
((..	chr2:109398518-109398816(+)$1	1	188	192	11.9999
.)).	chr2:207012154-207012383(-)$1	1	215	219	11.9999
...)	chr7:27832620-27832871(+)$1	1	131	135	11.9999
.)).	chr15:40462722-40462977(+)$1	1	148	152	11.9999
..((	chr16:1552213-1552495(+)$1	1	38	42	11.9999
))).	chr7:148716155-148716386(-)$1	1	210	214	11.9999
((.(	chr17:7480636-7480882(+)$1	1	6	10	11.9999
.(((	chr16:2578027-2578250(+)$1	1	42	46	11.9999
))).	chr12:133248707-133249012(-)$1	1	249	253	11.9999
(.((	chr11:64536876-64537140(-)$1	1	155	159	11.9999
).))	chr20:17608052-17608298(-)$1	1	32	36	11.9999

#PSSM
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	
C : 0.98	c : 0.01	

#score	1007.9999999999995
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_transcript_m1_run1.nuc.txt

#NT
GGU	chr11:62285426-62285659(-)$1	233	20	23	9.0000
GGU	chr13:92000768-92001012(+)$1	244	0	3	9.0000
GGU	chr16:89654669-89654945(+)$1	276	3	6	9.0000
GGU	chr16:1796350-1796658(+)$1	308	5	8	9.0000
GGU	chr5:141019197-141019449(-)$1	252	48	51	9.0000
GGU	chr19:6740920-6741184(+)$1	264	25	28	9.0000
GGU	chr11:17098687-17098893(-)$1	206	19	22	9.0000
ggu	chr7:48672250-48672507(+)$1	257	58	61	9.0000
GGU	chr5:140105688-140105902(+)$1	214	9	12	9.0000
GGU	chr2:172014487-172014754(-)$1	267	73	76	9.0000
GGU	chr10:73585237-73585483(-)$1	246	113	116	9.0000
GGU	chr1:173835965-173836176(-)$1	211	6	9	9.0000
GGU	chr2:71653837-71654099(+)$1	262	66	69	9.0000
GGU	chr16:28167628-28167880(-)$1	252	31	34	9.0000
ggu	chr5:145876814-145877062(+)$1	248	13	16	9.0000
ggu	chr8:128749867-128750118(+)$1	251	55	58	9.0000
GGU	chr1:16054066-16054315(+)$1	249	99	102	9.0000
ggu	chr21:46493843-46494129(+)$1	286	51	54	9.0000
GGU	chr19:49608124-49608354(+)$1	230	51	54	9.0000
GGU	chr22:42301205-42301458(+)$1	253	2	5	9.0000
GGU	chr1:87380287-87380651(+)$1	364	44	47	9.0000
ggu	chr12:104518940-104519158(+)$1	218	132	135	9.0000
ggu	chr4:889716-889990(-)$1	274	63	66	9.0000
GGU	chr19:50363663-50363905(+)$1	242	56	59	9.0000
GGU	chr19:55609151-55609446(-)$1	295	37	40	9.0000
GGU	chr17:76123636-76123895(-)$1	259	106	109	9.0000
GGU	chr19:1412157-1412410(+)$1	253	133	136	9.0000
GGU	chr11:65732260-65732522(+)$1	262	57	60	9.0000
GGU	chr8:22267339-22267630(+)$1	291	1	4	9.0000
ggu	chr19:49311984-49312251(-)$1	267	3	6	9.0000
ggu	chr17:16344998-16345231(+)$1	233	85	88	9.0000
GGU	chr22:23615903-23616166(+)$1	263	42	45	9.0000
GGU	chr15:66786570-66786885(-)$1	315	0	3	9.0000
GGU	chr20:62626226-62626447(+)$1	221	89	92	9.0000
GGU	chr11:62291035-62291272(-)$1	237	51	54	9.0000
Ggu	chr11:93454735-93454991(+)$1	256	95	98	9.0000
ggu	chr2:97559937-97560189(-)$1	252	0	3	9.0000
GGU	chr11:991678-991934(+)$1	256	1	4	9.0000
GGU	chr22:49920765-49921014(-)$1	249	186	189	9.0000
GGU	chr22:23610330-23610594(+)$1	264	86	89	9.0000
GGU	chr1:78425973-78426188(-)$1	215	53	56	9.0000
GGU	chr19:45981754-45981976(-)$1	222	22	25	9.0000
GGU	chr1:51001499-51001761(-)$1	262	49	52	9.0000
GGU	chr19:18548137-18548399(-)$1	262	10	13	9.0000
GGU	chr15:45492505-45492749(-)$1	244	45	48	9.0000
ggu	chr19:17690496-17690736(+)$1	240	21	24	9.0000
GGU	chr11:27494092-27494363(-)$1	271	14	17	9.0000
GGU	chr19:50000906-50001146(+)$1	240	16	19	9.0000
GGU	chr1:12089538-12089798(+)$1	260	56	59	9.0000
ggu	chr4:56485019-56485303(-)$1	284	60	63	9.0000
GGU	chr11:66384527-66384803(+)$1	276	0	3	9.0000
GGU	chr17:2233487-2233727(-)$1	240	79	82	9.0000
GGU	chr3:23959237-23959462(+)$1	225	6	9	9.0000
GGU	chr1:109234933-109235210(+)$1	277	75	78	9.0000
GGU	chr18:56996009-56996232(-)$1	223	34	37	9.0000
GGU	chr17:64370154-64370400(+)$1	246	113	116	9.0000
ggu	chr12:121747980-121748247(-)$1	267	58	61	9.0000
GGU	chr18:56996032-56996245(-)$1	213	47	50	9.0000
ggu	chr17:44207192-44207489(-)$1	297	134	137	9.0000
GGU	chr12:133126712-133126957(+)$1	245	47	50	9.0000
ggu	chr11:9608596-9608854(+)$1	258	101	104	9.0000
GGU	chr8:103290690-103290929(-)$1	239	9	12	9.0000
GGU	chr19:46702494-46702749(-)$1	255	2	5	9.0000
GGU	chr8:48872501-48872753(-)$1	252	22	25	9.0000
GGU	chr17:73031129-73031391(+)$1	262	62	65	9.0000
ggu	chr10:74826201-74826466(-)$1	265	17	20	9.0000
GGU	chr19:3979723-3979946(-)$1	223	20	23	9.0000
ggu	chr9:134295962-134296231(+)$1	269	10	13	9.0000
GGU	chr4:17811847-17812125(-)$1	278	31	34	9.0000
GGU	chr17:43227556-43227794(+)$1	238	212	215	9.0000
GGU	chr12:56122310-56122595(-)$1	285	15	18	9.0000
GGU	chr19:4362855-4363116(-)$1	261	87	90	9.0000
GGU	chr12:109124543-109124827(-)$1	284	8	11	9.0000
ggu	chr2:111427634-111427891(-)$1	257	16	19	9.0000
GGU	chr11:62285992-62286249(-)$1	257	36	39	9.0000
GGU	chr9:136216147-136216365(+)$1	218	9	12	9.0000
GGU	chr16:89836408-89836663(-)$1	255	0	3	9.0000
ggu	chr8:38900416-38900678(+)$1	262	111	114	9.0000
GGU	chr3:196230254-196230506(-)$1	252	6	9	9.0000
GGU	chrX:138045289-138045545(-)$1	256	50	53	9.0000
GGU	chrX:47001712-47001940(-)$1	228	51	54	9.0000
ggu	chr17:7411143-7411394(+)$1	251	7	10	9.0000
ggu	chr22:19092385-19092673(-)$1	288	34	37	9.0000
GGU	chr1:28559358-28559606(-)$1	248	71	74	9.0000
GGU	chr4:170621117-170621374(+)$1	257	40	43	9.0000
GGU	chr1:28531740-28531961(-)$1	221	27	30	9.0000
GGU	chr12:49666495-49666738(+)$1	243	70	73	9.0000
ggu	chr20:30596084-30596320(+)$1	236	125	128	9.0000
GGU	chr9:136132937-136133201(-)$1	264	3	6	9.0000
GGU	chr3:38206942-38207236(+)$1	294	15	18	9.0000
GGU	chr11:75115432-75115639(+)$1	207	1	4	9.0000
GGU	chr20:47896813-47897029(+)$1	216	207	210	9.0000
ggu	chr8:1772076-1772450(+)$1	374	67	70	9.0000
GGU	chr19:2337704-2337979(+)$1	275	4	7	9.0000
GGU	chr1:27106041-27106263(+)$1	222	6	9	9.0000
ggu	chr5:126859764-126859991(+)$1	227	15	18	9.0000
ggu	chr12:123981689-123981947(-)$1	258	22	25	9.0000
GGU	chr1:227164008-227164284(+)$1	276	151	154	9.0000
GGU	chr4:151772953-151773217(-)$1	264	43	46	9.0000

#otherMatches

#Struct PSSM
fff	chr14:107092635-107092851(+)$1	216	100	103	9.0000
eee	chr11:62285426-62285659(-)$1	233	20	23	9.0000
:::	chr13:92000768-92001012(+)$1	244	0	3	9.0000
[ee	chr16:89654669-89654945(+)$1	276	3	6	9.0000
hhh	chr16:1796350-1796658(+)$1	308	5	8	9.0000
BBe	chr5:141019197-141019449(-)$1	252	48	51	9.0000
bb!	chr19:6740920-6741184(+)$1	264	25	28	9.0000
III	chr11:17098687-17098893(-)$1	206	19	22	9.0000
22b	chr7:48672250-48672507(+)$1	257	58	61	9.0000
mcc	chr5:140105688-140105902(+)$1	214	9	12	9.0000
eee	chr2:172014487-172014754(-)$1	267	73	76	9.0000
nnn	chr10:73585237-73585483(-)$1	246	113	116	9.0000
###	chr1:173835965-173836176(-)$1	211	6	9	9.0000
ddd	chr2:71653837-71654099(+)$1	262	66	69	9.0000
eee	chr16:28167628-28167880(-)$1	252	31	34	9.0000
FFF	chr5:145876814-145877062(+)$1	248	13	16	9.0000
C{D	chr8:128749867-128750118(+)$1	251	55	58	9.0000
mmm	chr1:16054066-16054315(+)$1	249	99	102	9.0000
cc:	chr21:46493843-46494129(+)$1	286	51	54	9.0000
FFF	chr19:49608124-49608354(+)$1	230	51	54	9.0000
[cc	chr22:42301205-42301458(+)$1	253	2	5	9.0000
qqq	chr1:87380287-87380651(+)$1	364	44	47	9.0000
fff	chr12:104518940-104519158(+)$1	218	132	135	9.0000
ddd	chr4:889716-889990(-)$1	274	63	66	9.0000
fff	chr19:50363663-50363905(+)$1	242	56	59	9.0000
#ff	chr19:55609151-55609446(-)$1	295	37	40	9.0000
ggg	chr17:76123636-76123895(-)$1	259	106	109	9.0000
EE{	chr19:1412157-1412410(+)$1	253	133	136	9.0000
]cc	chr11:65732260-65732522(+)$1	262	57	60	9.0000
ddd	chr8:22267339-22267630(+)$1	291	1	4	9.0000
fff	chr19:49311984-49312251(-)$1	267	3	6	9.0000
ddd	chr17:16344998-16345231(+)$1	233	85	88	9.0000
:::	chr22:23615903-23616166(+)$1	263	42	45	9.0000
eee	chr15:66786570-66786885(-)$1	315	0	3	9.0000
mmm	chr20:62626226-62626447(+)$1	221	89	92	9.0000
d%%	chr11:62291035-62291272(-)$1	237	51	54	9.0000
nff	chr11:93454735-93454991(+)$1	256	95	98	9.0000
:::	chr2:97559937-97560189(-)$1	252	0	3	9.0000
:::	chr11:991678-991934(+)$1	256	1	4	9.0000
ii]	chr22:49920765-49921014(-)$1	249	186	189	9.0000
a22	chr22:23610330-23610594(+)$1	264	86	89	9.0000
bb[	chr1:78425973-78426188(-)$1	215	53	56	9.0000
c[d	chr19:45981754-45981976(-)$1	222	22	25	9.0000
:::	chr1:51001499-51001761(-)$1	262	49	52	9.0000
##a	chr19:18548137-18548399(-)$1	262	10	13	9.0000
c]b	chr15:45492505-45492749(-)$1	244	45	48	9.0000
fff	chr19:17690496-17690736(+)$1	240	21	24	9.0000
a[e	chr11:27494092-27494363(-)$1	271	14	17	9.0000
iii	chr19:50000906-50001146(+)$1	240	16	19	9.0000
f]d	chr1:12089538-12089798(+)$1	260	56	59	9.0000
f[a	chr4:56485019-56485303(-)$1	284	60	63	9.0000
ccc	chr11:66384527-66384803(+)$1	276	0	3	9.0000
fff	chr17:2233487-2233727(-)$1	240	79	82	9.0000
hht	chr3:23959237-23959462(+)$1	225	6	9	9.0000
III	chr1:109234933-109235210(+)$1	277	75	78	9.0000
FFF	chr18:56996009-56996232(-)$1	223	34	37	9.0000
eee	chr17:64370154-64370400(+)$1	246	113	116	9.0000
ccc	chr12:121747980-121748247(-)$1	267	58	61	9.0000
FFF	chr18:56996032-56996245(-)$1	213	47	50	9.0000
sss	chr17:44207192-44207489(-)$1	297	134	137	9.0000
eel	chr12:133126712-133126957(+)$1	245	47	50	9.0000
dcc	chr11:9608596-9608854(+)$1	258	101	104	9.0000
fff	chr8:103290690-103290929(-)$1	239	9	12	9.0000
HHH	chr19:46702494-46702749(-)$1	255	2	5	9.0000
mmm	chr8:48872501-48872753(-)$1	252	22	25	9.0000
2bb	chr17:73031129-73031391(+)$1	262	62	65	9.0000
cc2	chr10:74826201-74826466(-)$1	265	17	20	9.0000
b[e	chr19:3979723-3979946(-)$1	223	20	23	9.0000
ddd	chr9:134295962-134296231(+)$1	269	10	13	9.0000
!!h	chr4:17811847-17812125(-)$1	278	31	34	9.0000
eee	chr17:43227556-43227794(+)$1	238	212	215	9.0000
hhh	chr12:56122310-56122595(-)$1	285	15	18	9.0000
ddd	chr19:4362855-4363116(-)$1	261	87	90	9.0000
:EE	chr12:109124543-109124827(-)$1	284	8	11	9.0000
hh"	chr2:111427634-111427891(-)$1	257	16	19	9.0000
eee	chr11:62285992-62286249(-)$1	257	36	39	9.0000
iii	chr9:136216147-136216365(+)$1	218	9	12	9.0000
CCC	chr16:89836408-89836663(-)$1	255	0	3	9.0000
FF@	chr8:38900416-38900678(+)$1	262	111	114	9.0000
fff	chr3:196230254-196230506(-)$1	252	6	9	9.0000
KKC	chrX:138045289-138045545(-)$1	256	50	53	9.0000
DDL	chrX:47001712-47001940(-)$1	228	51	54	9.0000
gee	chr17:7411143-7411394(+)$1	251	7	10	9.0000
ccc	chr22:19092385-19092673(-)$1	288	34	37	9.0000
eee	chr1:28559358-28559606(-)$1	248	71	74	9.0000
ffn	chr4:170621117-170621374(+)$1	257	40	43	9.0000
ee2	chr1:28531740-28531961(-)$1	221	27	30	9.0000
fff	chr12:49666495-49666738(+)$1	243	70	73	9.0000
doo	chr20:30596084-30596320(+)$1	236	125	128	9.0000
CCC	chr9:136132937-136133201(-)$1	264	3	6	9.0000
ooo	chr3:38206942-38207236(+)$1	294	15	18	9.0000
eee	chr11:75115432-75115639(+)$1	207	1	4	9.0000
dd:	chr20:47896813-47897029(+)$1	216	207	210	9.0000
ggg	chr8:1772076-1772450(+)$1	374	67	70	9.0000
hhh	chr19:2337704-2337979(+)$1	275	4	7	9.0000
DDD	chr1:27106041-27106263(+)$1	222	6	9	9.0000
ddd	chr5:126859764-126859991(+)$1	227	15	18	9.0000
KFF	chr12:123981689-123981947(-)$1	258	22	25	9.0000
c[d	chr1:227164008-227164284(+)$1	276	151	154	9.0000
ddd	chr4:151772953-151773217(-)$1	264	43	46	9.0000

#DB
)))	chr14:107092635-107092851(+)$1	1	100	103	9.0000
)))	chr11:62285426-62285659(-)$1	1	20	23	9.0000
...	chr13:92000768-92001012(+)$1	1	0	3	9.0000
.((	chr16:89654669-89654945(+)$1	1	3	6	9.0000
(((	chr16:1796350-1796658(+)$1	1	5	8	9.0000
(((	chr5:141019197-141019449(-)$1	1	48	51	9.0000
((.	chr19:6740920-6741184(+)$1	1	25	28	9.0000
(((	chr11:17098687-17098893(-)$1	1	19	22	9.0000
..)	chr7:48672250-48672507(+)$1	1	58	61	9.0000
.))	chr5:140105688-140105902(+)$1	1	9	12	9.0000
(((	chr2:172014487-172014754(-)$1	1	73	76	9.0000
...	chr10:73585237-73585483(-)$1	1	113	116	9.0000
...	chr1:173835965-173836176(-)$1	1	6	9	9.0000
)))	chr2:71653837-71654099(+)$1	1	66	69	9.0000
(((	chr16:28167628-28167880(-)$1	1	31	34	9.0000
(((	chr5:145876814-145877062(+)$1	1	13	16	9.0000
(.(	chr8:128749867-128750118(+)$1	1	55	58	9.0000
...	chr1:16054066-16054315(+)$1	1	99	102	9.0000
)).	chr21:46493843-46494129(+)$1	1	51	54	9.0000
(((	chr19:49608124-49608354(+)$1	1	51	54	9.0000
.((	chr22:42301205-42301458(+)$1	1	2	5	9.0000
...	chr1:87380287-87380651(+)$1	1	44	47	9.0000
)))	chr12:104518940-104519158(+)$1	1	132	135	9.0000
(((	chr4:889716-889990(-)$1	1	63	66	9.0000
(((	chr19:50363663-50363905(+)$1	1	56	59	9.0000
.((	chr19:55609151-55609446(-)$1	1	37	40	9.0000
(((	chr17:76123636-76123895(-)$1	1	106	109	9.0000
((.	chr19:1412157-1412410(+)$1	1	133	136	9.0000
.))	chr11:65732260-65732522(+)$1	1	57	60	9.0000
(((	chr8:22267339-22267630(+)$1	1	1	4	9.0000
(((	chr19:49311984-49312251(-)$1	1	3	6	9.0000
(((	chr17:16344998-16345231(+)$1	1	85	88	9.0000
...	chr22:23615903-23616166(+)$1	1	42	45	9.0000
(((	chr15:66786570-66786885(-)$1	1	0	3	9.0000
...	chr20:62626226-62626447(+)$1	1	89	92	9.0000
(..	chr11:62291035-62291272(-)$1	1	51	54	9.0000
.))	chr11:93454735-93454991(+)$1	1	95	98	9.0000
...	chr2:97559937-97560189(-)$1	1	0	3	9.0000
...	chr11:991678-991934(+)$1	1	1	4	9.0000
)).	chr22:49920765-49921014(-)$1	1	186	189	9.0000
)..	chr22:23610330-23610594(+)$1	1	86	89	9.0000
((.	chr1:78425973-78426188(-)$1	1	53	56	9.0000
(.(	chr19:45981754-45981976(-)$1	1	22	25	9.0000
...	chr1:51001499-51001761(-)$1	1	49	52	9.0000
..(	chr19:18548137-18548399(-)$1	1	10	13	9.0000
).)	chr15:45492505-45492749(-)$1	1	45	48	9.0000
)))	chr19:17690496-17690736(+)$1	1	21	24	9.0000
(.(	chr11:27494092-27494363(-)$1	1	14	17	9.0000
)))	chr19:50000906-50001146(+)$1	1	16	19	9.0000
).)	chr1:12089538-12089798(+)$1	1	56	59	9.0000
(.(	chr4:56485019-56485303(-)$1	1	60	63	9.0000
(((	chr11:66384527-66384803(+)$1	1	0	3	9.0000
(((	chr17:2233487-2233727(-)$1	1	79	82	9.0000
((.	chr3:23959237-23959462(+)$1	1	6	9	9.0000
(((	chr1:109234933-109235210(+)$1	1	75	78	9.0000
(((	chr18:56996009-56996232(-)$1	1	34	37	9.0000
)))	chr17:64370154-64370400(+)$1	1	113	116	9.0000
)))	chr12:121747980-121748247(-)$1	1	58	61	9.0000
(((	chr18:56996032-56996245(-)$1	1	47	50	9.0000
...	chr17:44207192-44207489(-)$1	1	134	137	9.0000
((.	chr12:133126712-133126957(+)$1	1	47	50	9.0000
)))	chr11:9608596-9608854(+)$1	1	101	104	9.0000
(((	chr8:103290690-103290929(-)$1	1	9	12	9.0000
(((	chr19:46702494-46702749(-)$1	1	2	5	9.0000
...	chr8:48872501-48872753(-)$1	1	22	25	9.0000
.))	chr17:73031129-73031391(+)$1	1	62	65	9.0000
)).	chr10:74826201-74826466(-)$1	1	17	20	9.0000
(.(	chr19:3979723-3979946(-)$1	1	20	23	9.0000
)))	chr9:134295962-134296231(+)$1	1	10	13	9.0000
..(	chr4:17811847-17812125(-)$1	1	31	34	9.0000
(((	chr17:43227556-43227794(+)$1	1	212	215	9.0000
(((	chr12:56122310-56122595(-)$1	1	15	18	9.0000
(((	chr19:4362855-4363116(-)$1	1	87	90	9.0000
.((	chr12:109124543-109124827(-)$1	1	8	11	9.0000
((.	chr2:111427634-111427891(-)$1	1	16	19	9.0000
)))	chr11:62285992-62286249(-)$1	1	36	39	9.0000
(((	chr9:136216147-136216365(+)$1	1	9	12	9.0000
(((	chr16:89836408-89836663(-)$1	1	0	3	9.0000
)).	chr8:38900416-38900678(+)$1	1	111	114	9.0000
(((	chr3:196230254-196230506(-)$1	1	6	9	9.0000
..(	chrX:138045289-138045545(-)$1	1	50	53	9.0000
((.	chrX:47001712-47001940(-)$1	1	51	54	9.0000
(((	chr17:7411143-7411394(+)$1	1	7	10	9.0000
(((	chr22:19092385-19092673(-)$1	1	34	37	9.0000
)))	chr1:28559358-28559606(-)$1	1	71	74	9.0000
((.	chr4:170621117-170621374(+)$1	1	40	43	9.0000
)).	chr1:28531740-28531961(-)$1	1	27	30	9.0000
)))	chr12:49666495-49666738(+)$1	1	70	73	9.0000
(..	chr20:30596084-30596320(+)$1	1	125	128	9.0000
(((	chr9:136132937-136133201(-)$1	1	3	6	9.0000
...	chr3:38206942-38207236(+)$1	1	15	18	9.0000
(((	chr11:75115432-75115639(+)$1	1	1	4	9.0000
)).	chr20:47896813-47897029(+)$1	1	207	210	9.0000
)))	chr8:1772076-1772450(+)$1	1	67	70	9.0000
(((	chr19:2337704-2337979(+)$1	1	4	7	9.0000
(((	chr1:27106041-27106263(+)$1	1	6	9	9.0000
(((	chr5:126859764-126859991(+)$1	1	15	18	9.0000
.((	chr12:123981689-123981947(-)$1	1	22	25	9.0000
(.(	chr1:227164008-227164284(+)$1	1	151	154	9.0000
)))	chr4:151772953-151773217(-)$1	1	43	46	9.0000

#PSSM
G : 0.75	g : 0.25	
G : 0.74	g : 0.26	
U : 0.74	u : 0.26	

#score	900.0000000000001
#seq	100
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_transcript_m1_run1.nuc.txt

#NT
UUUCUaaaaaa	chr17:47676744-47677007(-)$1	263	112	123	24.9607
UCUUUAAAAAA	chr6:17615407-17615629(-)$1	222	122	133	23.7843
UUCUUAAAAAA	chr1:93602579-93602835(+)$1	256	91	102	23.7843
uuuuuaaaaaa	chr1:78435236-78435486(-)$1	250	63	74	28.4901
UUUUUAAAAAA	chr10:35859026-35859317(+)$1	291	108	119	28.4901
UUUGUAAAAAA	chr1:145442410-145442667(+)$1	257	182	193	25.2549
UUAUUaaaaaa	chr20:45838945-45839220(-)$1	275	111	122	23.7843
UUUUUAAGAAA	chr1:162569462-162569710(+)$1	248	113	124	24.0784
uuuuuaaaaaa	chr4:174252814-174253092(-)$1	278	203	214	28.4901
uuuuuaaaaaa	chr17:56050935-56051185(-)$1	250	61	72	28.4901
UUUUUAAAAAA	chr21:44513021-44513263(-)$1	242	127	138	28.4901
auuuuaaaaaa	chr14:69254688-69254951(-)$1	263	89	100	24.1764
UUUGUAAAAAA	chr1:145442467-145442716(+)$1	249	125	136	25.2549
UUUUUAAAUAA	chr6:33377541-33377786(+)$1	245	98	109	24.8627
uuuuuaaauaa	chr17:27589256-27589525(-)$1	269	101	112	24.8627
UUUGuaaaaaa	chr17:7757640-7757915(+)$1	275	80	91	25.2549
UUUUUAAAAAU	chr7:148522977-148523219(-)$1	242	119	130	23.9803
uuuuuaaaaaa	chrX:123234620-123234884(+)$1	264	108	119	28.4901
cuuuuaaaaaa	chr8:101734094-101734316(-)$1	222	100	111	24.5686
cuuuuaaaaaa	chr8:101734116-101734344(-)$1	228	128	139	24.5686
UUUUUAUAUAA	chr22:36677278-36677495(-)$1	217	61	72	21.6274
CUUUUAAAAAA	chr4:174253018-174253271(-)$1	253	195	206	24.5686
UUUUUAAACAA	chr6:43753926-43754176(+)$1	250	214	225	24.3725
UUUAUAGAAAA	chr7:155101668-155101913(+)$1	245	101	112	21.1372
uuuuuaaaaaa	chr4:174252775-174253014(-)$1	239	125	136	28.4901
uuuuuaaaaaa	chr1:78435343-78435614(-)$1	271	191	202	28.4901
UUUUUAAGAAA	chr7:100278803-100279081(-)$1	278	96	107	24.0784
UUUCUAAAAAA	chr14:35870988-35871277(-)$1	289	117	128	24.9607
uuuuuaaaaaa	chr3:128338890-128339159(-)$1	269	98	109	28.4901
UUUUUAAAGAA	chr19:18390586-18390863(-)$1	277	100	111	24.3725
uuuguaaaaaa	chr7:21554052-21554310(+)$1	258	92	103	25.2549
UUUUUAAAAAA	chr3:50296203-50296465(+)$1	262	103	114	28.4901
UUUUUAAAUAA	chr6:33377426-33377716(+)$1	290	213	224	24.8627
uuucuauaaaa	chr12:25361984-25362233(-)$1	249	102	113	21.7254
UUUUUAUAAAU	chr19:46029981-46030282(+)$1	301	250	261	20.7450
UUUAUAUAAAA	chr1:151376538-151376834(-)$1	296	115	126	21.7254
cuuuuaaaaaa	chr8:101734082-101734294(-)$1	212	78	89	24.5686
UUUUUAUAUAA	chr22:36677295-36677528(-)$1	233	94	105	21.6274
UGUUUAAAAAA	chr5:151184283-151184535(+)$1	252	201	212	23.7843
UUUUUAAAAAA	chr14:70238099-70238357(+)$1	258	107	118	28.4901
UUUAUAUAAAA	chr17:47128505-47128752(+)$1	247	40	51	21.7254
uuuuuaaaaaa	chr17:56050985-56051202(-)$1	217	78	89	28.4901
UUUUUAUAAAA	chr3:51435663-51435934(-)$1	271	92	103	25.2549
UUUUUAAAAAA	chr1:203823020-203823281(+)$1	261	93	104	28.4901
uuuuuaaGAAA	chr1:203276584-203276885(+)$1	301	101	112	24.0784
UUUUUAAAAAC	chr5:179046637-179046955(-)$1	318	133	144	23.8823
UUUUUAAAUAA	chr11:47491703-47491931(-)$1	228	34	45	24.8627
cuuuuaaaaaa	chr8:101734155-101734404(-)$1	249	188	199	24.5686
UUUGUAUAAAA	chr9:135973042-135973335(-)$1	293	105	116	22.0196
UUUUUAGaaaa	chr19:10578460-10578707(+)$1	247	101	112	24.6666

#otherMatches

#Struct PSSM
eeeooooooee	chr18:60997902-60998179(-)$1	277	117	128	25.2549
fffff^^^^^^	chr17:47676744-47677007(-)$1	263	112	123	24.9607
=======4444	chr6:17615407-17615629(-)$1	222	122	133	23.7843
^^^^^^^^^^^	chr1:93602579-93602835(+)$1	256	91	102	23.7843
=========mm	chr1:78435236-78435486(-)$1	250	63	74	28.4901
:::::::::::	chr10:35859026-35859317(+)$1	291	108	119	28.4901
44hhhhhhhhf	chr1:145442410-145442667(+)$1	257	182	193	25.2549
cc[bbqqqqqq	chr20:45838945-45839220(-)$1	275	111	122	23.7843
d!!cccooooo	chr1:162569462-162569710(+)$1	248	113	124	24.0784
gggglllgggg	chr4:174252814-174253092(-)$1	278	203	214	28.4901
hhhhhhhhttt	chr17:56050935-56051185(-)$1	250	61	72	28.4901
hhhhhtttttt	chr21:44513021-44513263(-)$1	242	127	138	28.4901
iiiiillliii	chr14:69254688-69254951(-)$1	263	89	100	24.1764
fff[ffffff&	chr1:145442467-145442716(+)$1	249	125	136	25.2549
::::::::ddd	chr6:33377541-33377786(+)$1	245	98	109	24.8627
=====^^^^^^	chr17:27589256-27589525(-)$1	269	101	112	24.8627
hhhhhtttttt	chr17:7757640-7757915(+)$1	275	80	91	25.2549
8888eeeeedd	chr7:148522977-148523219(-)$1	242	119	130	23.9803
hhhhhoooooo	chrX:123234620-123234884(+)$1	264	108	119	28.4901
neeeee:::::	chr8:101734094-101734316(-)$1	222	100	111	24.5686
neeeee:::::	chr8:101734116-101734344(-)$1	228	128	139	24.5686
ffff+++++++	chr22:36677278-36677495(-)$1	217	61	72	21.6274
:::ggggggg[	chr4:174253018-174253271(-)$1	253	195	206	24.5686
:::::::::::	chr6:43753926-43754176(+)$1	250	214	225	24.3725
ggggggppppp	chr7:155101668-155101913(+)$1	245	101	112	21.1372
gggglllgggg	chr4:174252775-174253014(-)$1	239	125	136	28.4901
=========mm	chr1:78435343-78435614(-)$1	271	191	202	28.4901
=mmmm======	chr7:100278803-100279081(-)$1	278	96	107	24.0784
gggggvvvvvv	chr14:35870988-35871277(-)$1	289	117	128	24.9607
qqqqq======	chr3:128338890-128339159(-)$1	269	98	109	28.4901
d&&&&&&&ddd	chr19:18390586-18390863(-)$1	277	100	111	24.3725
iiipppppppi	chr7:21554052-21554310(+)$1	258	92	103	25.2549
ggggg::::::	chr3:50296203-50296465(+)$1	262	103	114	28.4901
::::::::ddd	chr6:33377426-33377716(+)$1	290	213	224	24.8627
=======uuuu	chr12:25361984-25362233(-)$1	249	102	113	21.7254
gggggg22bb]	chr19:46029981-46030282(+)$1	301	250	261	20.7450
fffffoooooo	chr1:151376538-151376834(-)$1	296	115	126	21.7254
neeeee:::::	chr8:101734082-101734294(-)$1	212	78	89	24.5686
eeerrrrrrrr	chr22:36677295-36677528(-)$1	233	94	105	21.6274
>>>>>>>>>>>	chr5:151184283-151184535(+)$1	252	201	212	23.7843
:::::::::::	chr14:70238099-70238357(+)$1	258	107	118	28.4901
dddoooooodd	chr17:47128505-47128752(+)$1	247	40	51	21.7254
hhhhhhhhttt	chr17:56050985-56051202(-)$1	217	78	89	28.4901
hhhhhh:::::	chr3:51435663-51435934(-)$1	271	92	103	25.2549
ff%%%%%%eee	chr1:203823020-203823281(+)$1	261	93	104	28.4901
e]hhhhhhhh]	chr1:203276584-203276885(+)$1	301	101	112	24.0784
+ffffffmmmm	chr5:179046637-179046955(-)$1	318	133	144	23.8823
ggggg^^^^^^	chr11:47491703-47491931(-)$1	228	34	45	24.8627
neeeee:::::	chr8:101734155-101734404(-)$1	249	188	199	24.5686
{EEEEE::::g	chr9:135973042-135973335(-)$1	293	105	116	22.0196
nnnccc]bb22	chr19:10578460-10578707(+)$1	247	101	112	24.6666

#DB
(((......))	chr18:60997902-60998179(-)$1	1	117	128	25.2549
(((((......	chr17:47676744-47677007(-)$1	1	112	123	24.9607
)))))))....	chr6:17615407-17615629(-)$1	1	122	133	23.7843
...........	chr1:93602579-93602835(+)$1	1	91	102	23.7843
(((((((((..	chr1:78435236-78435486(-)$1	1	63	74	28.4901
...........	chr10:35859026-35859317(+)$1	1	108	119	28.4901
..)))))))))	chr1:145442410-145442667(+)$1	1	182	193	25.2549
((.((......	chr20:45838945-45839220(-)$1	1	111	122	23.7843
(..(((.....	chr1:162569462-162569710(+)$1	1	113	124	24.0784
((((...))))	chr4:174252814-174253092(-)$1	1	203	214	28.4901
((((((((...	chr17:56050935-56051185(-)$1	1	61	72	28.4901
(((((......	chr21:44513021-44513263(-)$1	1	127	138	28.4901
(((((...)))	chr14:69254688-69254951(-)$1	1	89	100	24.1764
(((.((((((.	chr1:145442467-145442716(+)$1	1	125	136	25.2549
........(((	chr6:33377541-33377786(+)$1	1	98	109	24.8627
(((((......	chr17:27589256-27589525(-)$1	1	101	112	24.8627
(((((......	chr17:7757640-7757915(+)$1	1	80	91	25.2549
....)))))((	chr7:148522977-148523219(-)$1	1	119	130	23.9803
(((((......	chrX:123234620-123234884(+)$1	1	108	119	28.4901
.))))).....	chr8:101734094-101734316(-)$1	1	100	111	24.5686
.))))).....	chr8:101734116-101734344(-)$1	1	128	139	24.5686
((((.......	chr22:36677278-36677495(-)$1	1	61	72	21.6274
...(((((((.	chr4:174253018-174253271(-)$1	1	195	206	24.5686
...........	chr6:43753926-43754176(+)$1	1	214	225	24.3725
((((((.....	chr7:155101668-155101913(+)$1	1	101	112	21.1372
((((...))))	chr4:174252775-174253014(-)$1	1	125	136	28.4901
(((((((((..	chr1:78435343-78435614(-)$1	1	191	202	28.4901
(....))))))	chr7:100278803-100279081(-)$1	1	96	107	24.0784
(((((......	chr14:35870988-35871277(-)$1	1	117	128	24.9607
.....))))))	chr3:128338890-128339159(-)$1	1	98	109	28.4901
(.......(((	chr19:18390586-18390863(-)$1	1	100	111	24.3725
(((.......)	chr7:21554052-21554310(+)$1	1	92	103	25.2549
)))))......	chr3:50296203-50296465(+)$1	1	103	114	28.4901
........(((	chr6:33377426-33377716(+)$1	1	213	224	24.8627
(((((((....	chr12:25361984-25362233(-)$1	1	102	113	21.7254
))))))..)).	chr19:46029981-46030282(+)$1	1	250	261	20.7450
(((((......	chr1:151376538-151376834(-)$1	1	115	126	21.7254
.))))).....	chr8:101734082-101734294(-)$1	1	78	89	24.5686
(((........	chr22:36677295-36677528(-)$1	1	94	105	21.6274
...........	chr5:151184283-151184535(+)$1	1	201	212	23.7843
...........	chr14:70238099-70238357(+)$1	1	107	118	28.4901
(((......))	chr17:47128505-47128752(+)$1	1	40	51	21.7254
((((((((...	chr17:56050985-56051202(-)$1	1	78	89	28.4901
)))))).....	chr3:51435663-51435934(-)$1	1	92	103	25.2549
((......(((	chr1:203823020-203823281(+)$1	1	93	104	28.4901
).)))))))).	chr1:203276584-203276885(+)$1	1	101	112	24.0784
.((((((....	chr5:179046637-179046955(-)$1	1	133	144	23.8823
(((((......	chr11:47491703-47491931(-)$1	1	34	45	24.8627
.))))).....	chr8:101734155-101734404(-)$1	1	188	199	24.5686
.(((((....(	chr9:135973042-135973335(-)$1	1	105	116	22.0196
...))).))..	chr19:10578460-10578707(+)$1	1	101	112	24.6666

#PSSM
U : 0.64	u : 0.23	c : 0.07	a : 0.01	C : 0.01	
U : 0.62	u : 0.33	C : 0.01	G : 0.01	
U : 0.62	u : 0.33	C : 0.01	A : 0.01	
U : 0.47	u : 0.29	G : 0.09	A : 0.05	C : 0.03	g : 0.01	c : 0.01	
U : 0.64	u : 0.35	
A : 0.58	a : 0.41	
A : 0.41	a : 0.39	U : 0.13	G : 0.03	u : 0.01	
A : 0.52	a : 0.41	G : 0.05	
A : 0.45	a : 0.39	U : 0.09	u : 0.01	C : 0.01	G : 0.01	
A : 0.58	a : 0.41	
A : 0.52	a : 0.41	U : 0.03	C : 0.01	

#score	1279.2745098039213
#seq	51
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_UTR_m3_run1.nuc.txt

#NT
GCGCAGGCGGC	chr13:114144690-114144940(-)$1	250	21	32	14.4130
GGCAGGGCCGC	chr2:242751927-242752189(+)$1	262	243	254	15.4999
GGCCAGGCCGG	chr19:35491228-35491469(+)$1	241	43	54	16.9130
GGAAAGGCGGC	chr7:99698096-99698365(-)$1	269	80	91	15.2826
GGCCAGGCAGG	chr19:56152440-56152700(+)$1	260	158	169	17.0217
gccgaggcggc	chr20:35491904-35492159(-)$1	255	0	11	16.5869
ggcgcgggggg	chr9:116918124-116918379(+)$1	255	120	131	13.8695
GGCCAGGCGGC	chr17:79860086-79860313(-)$1	227	93	104	22.2391
GCCCAGGGGGC	chr11:57244302-57244591(-)$1	289	35	46	16.0434
GGCGGGGCGGU	chr19:14529797-14530097(-)$1	300	135	146	16.4782
GGCUGGGAGGC	chr3:52328970-52329205(+)$1	235	97	108	15.6086
GGCGGGGCGGG	chr19:50815487-50815763(-)$1	276	233	244	17.7826
ggccgggcggg	chr1:1284470-1284687(-)$1	217	147	158	19.8478
ggcccgggggc	chrX:152989450-152989713(-)$1	263	14	25	17.6739
ggccgggcggc	chr1:1821711-1821962(-)$1	251	171	182	21.5869
GGGCAGGAGGC	chr9:138902111-138902379(-)$1	268	149	160	15.0652
gacgaggcggc	chr4:2819869-2820160(+)$1	291	138	149	16.0434
GCCCAGGGGGC	chr14:104164687-104164921(+)$1	234	60	71	16.0434
CGCGAGGCGGC	chr2:240321989-240322245(-)$1	256	79	90	15.6086
GGCAGGGCCGC	chr22:24988878-24989122(-)$1	244	12	23	15.4999
GCCCAGGGGGC	chr14:104164476-104164764(+)$1	288	271	282	16.0434
GGCCGGGCGGG	chr20:35491736-35492004(-)$1	268	203	214	19.8478
GGCGAGGCGGG	chr5:74162107-74162423(-)$1	316	14	25	18.4347
GGCAGCGCGGC	chr2:20550340-20550568(-)$1	228	188	199	14.7391
GGCCGGGUGGC	chr2:20549944-20550198(-)$1	254	198	209	18.2173
GGCGACGCGGC	chr16:68298462-68298801(+)$1	339	308	319	15.8260
GGCCUGGGGGC	chr1:202776142-202776390(-)$1	248	178	189	17.6739
GGCCCGGCCGU	chr17:74380550-74380797(+)$1	247	8	19	13.6521
GGCAUGGAGGC	chr22:45622575-45622815(-)$1	240	29	40	14.8478
gcccgggcggc	chr19:4065582-4065818(-)$1	236	115	126	17.9999
ggcgcggcggc	chr11:3013191-3013466(-)$1	275	72	83	18.2173
CGCCAGGCGGC	chr7:1570271-1570496(+)$1	225	154	165	17.6739
GGCCUGGCGGG	chr2:230786253-230786519(-)$1	266	164	175	18.5434
GGCCAGGAAGG	chr17:74497115-74497365(-)$1	250	35	46	14.0869
GGCCGGGCAGG	chr17:72428197-72428431(+)$1	234	101	112	16.3695
GGCAAGGCGGC	chr11:2160409-2160612(-)$1	203	107	118	19.7391
GGCCGGGCGGC	chr6:4776555-4776807(+)$1	252	34	45	21.5869
GGCCGGGGGGG	chr17:55333767-55334048(+)$1	281	90	101	17.2391
GGGCUGGCGGG	chr7:2291640-2291882(-)$1	242	108	119	14.3043
ggccgggcgcc	chr5:176899891-176900153(-)$1	262	229	240	17.0217
GGCGAGGCAGC	chr2:242752334-242752572(+)$1	238	173	184	16.6956
GGCCAGGAAGG	chr17:74497178-74497468(-)$1	290	138	149	14.0869
ggccaaggggc	chr19:41196400-41196731(-)$1	331	60	71	15.2826
GGCCAGGCGGG	chr17:36955846-36956125(-)$1	279	93	104	20.4999
GGCCAGGCGCC	chr1:27561106-27561387(+)$1	281	170	181	17.6739

#otherMatches

#Struct PSSM
mmmeeeeeggg	chr10:21783711-21783983(-)$1	272	235	246	17.2391
LLDDDDeeeee	chr13:114144690-114144940(-)$1	250	21	32	14.4130
IIII}CCCABB	chr2:242751927-242752189(+)$1	262	243	254	15.4999
mmbb]eeeee]	chr19:35491228-35491469(+)$1	241	43	54	16.9130
f"""eeeee[a	chr7:99698096-99698365(-)$1	269	80	91	15.2826
========:HH	chr19:56152440-56152700(+)$1	260	158	169	17.0217
ddddllldddd	chr20:35491904-35492159(-)$1	255	0	11	16.5869
EKKJJJJJJJJ	chr9:116918124-116918379(+)$1	255	120	131	13.8695
[bb!!ffffff	chr17:79860086-79860313(-)$1	227	93	104	22.2391
:ccc[======	chr11:57244302-57244591(-)$1	289	35	46	16.0434
[bb!!======	chr19:14529797-14530097(-)$1	300	135	146	16.4782
hh22ccc:A}I	chr3:52328970-52329205(+)$1	235	97	108	15.6086
FF}CCCFFFFF	chr19:50815487-50815763(-)$1	276	233	244	17.7826
ddaccciiiii	chr1:1284470-1284687(-)$1	217	147	158	19.8478
ddd[dddd!!e	chrX:152989450-152989713(-)$1	263	14	25	17.6739
EEEEE}BBhhh	chr1:1821711-1821962(-)$1	251	171	182	21.5869
dffffff[bb!	chr9:138902111-138902379(-)$1	268	149	160	15.0652
666666eeeee	chr4:2819869-2820160(+)$1	291	138	149	16.0434
ddddllldddd	chr14:104164687-104164921(+)$1	234	60	71	16.0434
ccbb[ddddmm	chr2:240321989-240322245(-)$1	256	79	90	15.6086
DDD{BBdddd[	chr22:24988878-24989122(-)$1	244	12	23	15.4999
ddd22cccEEE	chr14:104164476-104164764(+)$1	288	271	282	16.0434
eeeennnnnee	chr20:35491736-35492004(-)$1	268	203	214	19.8478
ccc[bb[gggg	chr5:74162107-74162423(-)$1	316	14	25	18.4347
dddd]ffffff	chr2:20550340-20550568(-)$1	228	188	199	14.7391
]ggggggg:::	chr2:20549944-20550198(-)$1	254	198	209	18.2173
}BBYYA}EEEE	chr16:68298462-68298801(+)$1	339	308	319	15.8260
cccccc]ffff	chr1:202776142-202776390(-)$1	248	178	189	17.6739
g[ddddmmmmd	chr17:74380550-74380797(+)$1	247	8	19	13.6521
obb]a333ddd	chr22:45622575-45622815(-)$1	240	29	40	14.8478
Eggggggg[cc	chr19:4065582-4065818(-)$1	236	115	126	17.9999
eee[a[bb[ff	chr11:3013191-3013466(-)$1	275	72	83	18.2173
ddddmmmmddd	chr7:1570271-1570496(+)$1	225	154	165	17.6739
dddd:ccc[ee	chr2:230786253-230786519(-)$1	266	164	175	18.5434
FFFFFFLLLDD	chr17:74497115-74497365(-)$1	250	35	46	14.0869
EEKKDDDD::c	chr17:72428197-72428431(+)$1	234	101	112	16.3695
eeee::JJJJJ	chr11:2160409-2160612(-)$1	203	107	118	19.7391
MMDDDDggggg	chr6:4776555-4776807(+)$1	252	34	45	21.5869
:cccnnnnncc	chr17:55333767-55334048(+)$1	281	90	101	17.2391
!!bb!!ddddd	chr7:2291640-2291882(-)$1	242	108	119	14.3043
DDDDdddd[ee	chr5:176899891-176900153(-)$1	262	229	240	17.0217
cbbggggggg3	chr2:242752334-242752572(+)$1	238	173	184	16.6956
22eeeee22dd	chr17:74497178-74497468(-)$1	290	138	149	14.0869
dddd::IIIII	chr19:41196400-41196731(-)$1	331	60	71	15.2826
dddd[eeeeem	chr17:36955846-36956125(-)$1	279	93	104	20.4999
nnnnnbb]iii	chr1:27561106-27561387(+)$1	281	170	181	17.6739

#DB
...)))))(((	chr10:21783711-21783983(-)$1	1	235	246	17.2391
..(((((((((	chr13:114144690-114144940(-)$1	1	21	32	14.4130
)))).))))))	chr2:242751927-242752189(+)$1	1	243	254	15.4999
..)).))))).	chr19:35491228-35491469(+)$1	1	43	54	16.9130
(...(((((.(	chr7:99698096-99698365(-)$1	1	80	91	15.2826
)))))))).))	chr19:56152440-56152700(+)$1	1	158	169	17.0217
((((...))))	chr20:35491904-35492159(-)$1	1	0	11	16.5869
(..((((((((	chr9:116918124-116918379(+)$1	1	120	131	13.8695
.((..((((((	chr17:79860086-79860313(-)$1	1	93	104	22.2391
.(((.((((((	chr11:57244302-57244591(-)$1	1	35	46	16.0434
.((..((((((	chr19:14529797-14530097(-)$1	1	135	146	16.4782
))..))).).)	chr3:52328970-52329205(+)$1	1	97	108	15.6086
)).))))))))	chr19:50815487-50815763(-)$1	1	233	244	17.7826
(((((((((((	chr1:1284470-1284687(-)$1	1	147	158	19.8478
(((.((((..(	chrX:152989450-152989713(-)$1	1	14	25	17.6739
))))).))(((	chr1:1821711-1821962(-)$1	1	171	182	21.5869
(((((((.((.	chr9:138902111-138902379(-)$1	1	149	160	15.0652
......)))))	chr4:2819869-2820160(+)$1	1	138	149	16.0434
((((...))))	chr14:104164687-104164921(+)$1	1	60	71	16.0434
((((.((((..	chr2:240321989-240322245(-)$1	1	79	90	15.6086
(((.((((((.	chr22:24988878-24989122(-)$1	1	12	23	15.4999
)))..))))))	chr14:104164476-104164764(+)$1	1	271	282	16.0434
((((.....))	chr20:35491736-35492004(-)$1	1	203	214	19.8478
(((.((.((((	chr5:74162107-74162423(-)$1	1	14	25	18.4347
)))).))))))	chr2:20550340-20550568(-)$1	1	188	199	14.7391
.)))))))...	chr2:20549944-20550198(-)$1	1	198	209	18.2173
.))..).))))	chr16:68298462-68298801(+)$1	1	308	319	15.8260
)))))).))))	chr1:202776142-202776390(-)$1	1	178	189	17.6739
(.((((....)	chr17:74380550-74380797(+)$1	1	8	19	13.6521
.)).)...)))	chr22:45622575-45622815(-)$1	1	29	40	14.8478
)(((((((.((	chr19:4065582-4065818(-)$1	1	115	126	17.9999
(((.(.((.((	chr11:3013191-3013466(-)$1	1	72	83	18.2173
((((....)))	chr7:1570271-1570496(+)$1	1	154	165	17.6739
)))).(((.((	chr2:230786253-230786519(-)$1	1	164	175	18.5434
((((((...((	chr17:74497115-74497365(-)$1	1	35	46	14.0869
((..((((..(	chr17:72428197-72428431(+)$1	1	101	112	16.3695
))))..(((((	chr11:2160409-2160612(-)$1	1	107	118	19.7391
..(((((((((	chr6:4776555-4776807(+)$1	1	34	45	21.5869
.(((.....))	chr17:55333767-55334048(+)$1	1	90	101	17.2391
..((..(((((	chr7:2291640-2291882(-)$1	1	108	119	14.3043
))))((((.((	chr5:176899891-176900153(-)$1	1	229	240	17.0217
)))))))))).	chr2:242752334-242752572(+)$1	1	173	184	16.6956
..)))))..))	chr17:74497178-74497468(-)$1	1	138	149	14.0869
))))..(((((	chr19:41196400-41196731(-)$1	1	60	71	15.2826
((((.(((((.	chr17:36955846-36956125(-)$1	1	93	104	20.4999
.....)).)))	chr1:27561106-27561387(+)$1	1	170	181	17.6739

#PSSM
G : 0.73	g : 0.21	C : 0.04	
G : 0.69	g : 0.15	C : 0.08	c : 0.04	a : 0.02	
C : 0.69	c : 0.21	G : 0.06	A : 0.02	
C : 0.49	A : 0.13	G : 0.13	c : 0.13	g : 0.08	U : 0.02	
A : 0.41	G : 0.26	g : 0.08	U : 0.08	a : 0.06	c : 0.06	C : 0.02	
G : 0.71	g : 0.19	C : 0.04	A : 0.02	a : 0.02	
G : 0.78	g : 0.21	
C : 0.54	c : 0.15	G : 0.10	A : 0.10	g : 0.06	U : 0.02	
G : 0.58	g : 0.21	A : 0.10	C : 0.08	
G : 0.76	g : 0.19	c : 0.02	C : 0.02	
C : 0.47	G : 0.26	c : 0.17	g : 0.04	U : 0.04	

#score	778.6521739130432
#seq	46
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_transcript_m1_run2.nuc.txt

#NT
AGG	chr2:27607746-27608012(-)$1	266	14	17	8.9999
AGG	chr14:24650877-24651127(-)$1	250	18	21	8.9999
AGG	chr2:54876720-54876946(+)$1	226	83	86	8.9999
AGG	chr2:96959045-96959266(-)$1	221	17	20	8.9999
AGG	chr11:61070422-61070656(-)$1	234	132	135	8.9999
AGG	chr6:52132562-52132812(-)$1	250	44	47	8.9999
AGG	chrX:77378323-77378540(+)$1	217	103	106	8.9999
AGG	chr10:75860643-75860892(+)$1	249	4	7	8.9999
AGG	chr9:111680994-111681251(-)$1	257	68	71	8.9999
AGG	chr1:202731732-202731999(-)$1	267	11	14	8.9999
AGG	chr17:55187341-55187616(+)$1	275	42	45	8.9999
AGG	chr8:101716424-101716651(-)$1	227	31	34	8.9999
AGG	chr1:17751976-17752242(-)$1	266	10	13	8.9999
AGG	chr1:156290693-156290914(-)$1	221	25	28	8.9999
AGG	chrX:53603828-53604086(-)$1	258	11	14	8.9999
AGG	chr16:29708215-29708453(+)$1	238	54	57	8.9999
AGG	chr2:27258024-27258245(+)$1	221	0	3	8.9999
AGG	chr2:207012264-207012486(-)$1	222	8	11	8.9999
AGG	chr3:128532119-128532433(+)$1	314	48	51	8.9999
AGG	chr20:55088270-55088580(+)$1	310	116	119	8.9999
AGG	chr7:127569177-127569437(+)$1	260	61	64	8.9999
AGG	chr1:36074744-36075112(-)$1	368	150	153	8.9999
agg	chr6:11185701-11186006(-)$1	305	33	36	8.9999
AGG	chr12:54744158-54744417(+)$1	259	3	6	8.9999
AGG	chr4:39510085-39510301(-)$1	216	19	22	8.9999
AGG	chr22:43023509-43023749(-)$1	240	53	56	8.9999
AGG	chr10:120796691-120796922(-)$1	231	99	102	8.9999
AGG	chr2:242168913-242169182(-)$1	269	3	6	8.9999
AGG	chr2:26456984-26457234(-)$1	250	137	140	8.9999
AGG	chrX:41075619-41075903(+)$1	284	18	21	8.9999
AGG	chr5:10262581-10262817(+)$1	236	18	21	8.9999
AGG	chr11:71729341-71729609(-)$1	268	110	113	8.9999
AGG	chr5:176893672-176893934(-)$1	262	13	16	8.9999
AGG	chr17:7481075-7481299(+)$1	224	11	14	8.9999
AGG	chr2:209106673-209106941(-)$1	268	70	73	8.9999
AGG	chr11:61094217-61094466(-)$1	249	55	58	8.9999
AGG	chr8:101724780-101725022(-)$1	242	3	6	8.9999
AGG	chr11:62291058-62291284(-)$1	226	54	57	8.9999
AGG	chr10:43882640-43882891(-)$1	251	2	5	8.9999
AGG	chr9:131353677-131353909(+)$1	232	41	44	8.9999
AGG	chr17:40990009-40990265(+)$1	256	0	3	8.9999
AGG	chr2:216184287-216184541(+)$1	254	98	101	8.9999
AGG	chr9:131371141-131371356(+)$1	215	9	12	8.9999
AGG	chr12:57038854-57039061(-)$1	207	26	29	8.9999
AGG	chr11:62299584-62299842(-)$1	258	74	77	8.9999
AGG	chr5:138266191-138266444(+)$1	253	19	22	8.9999
AGG	chr17:75488688-75488898(+)$1	210	60	63	8.9999
AGG	chr8:22472259-22472568(+)$1	309	46	49	8.9999
AGG	chr17:78357499-78357809(+)$1	310	136	139	8.9999
AGG	chr11:61093025-61093280(-)$1	255	136	139	8.9999
AGG	chr17:40049307-40049527(-)$1	220	16	19	8.9999
AGG	chrM:14364-14599(-)$1	235	68	71	8.9999
AGG	chr12:56553288-56553613(+)$1	325	26	29	8.9999
AGG	chr11:61077695-61077991(-)$1	296	72	75	8.9999
AGG	chr2:48032683-48032915(+)$1	232	71	74	8.9999
AGG	chr12:57884290-57884528(+)$1	238	6	9	8.9999
AGG	chr6:26056318-26056585(-)$1	267	8	11	8.9999
AGG	chr1:32660932-32661181(+)$1	249	29	32	8.9999
AGG	chr16:58749822-58750090(-)$1	268	5	8	8.9999
AGG	chrX:153581382-153581618(-)$1	236	44	47	8.9999
AGG	chr11:65623035-65623264(-)$1	229	61	64	8.9999
AGG	chr14:62204911-62205188(+)$1	277	127	130	8.9999
AGG	chr5:138223078-138223292(+)$1	214	206	209	8.9999
AGG	chr8:144993016-144993310(-)$1	294	0	3	8.9999
AGG	chr14:77928884-77929155(+)$1	271	52	55	8.9999
AGG	chr19:18962883-18963129(+)$1	246	16	19	8.9999
agg	chr1:226175734-226176192(-)$1	458	19	22	8.9999
AGG	chr3:48642011-48642251(-)$1	240	36	39	8.9999
AGG	chr5:71516585-71516935(-)$1	350	4	7	8.9999
AGG	chr11:118453793-118454021(+)$1	228	4	7	8.9999
AGG	chr3:139086925-139087184(-)$1	259	97	100	8.9999
AGG	chr2:96953133-96953394(-)$1	261	66	69	8.9999
AGG	chr2:232326570-232326818(-)$1	248	88	91	8.9999
AGG	chr17:57725629-57725862(+)$1	233	13	16	8.9999
AGG	chr3:41277114-41277335(+)$1	221	60	63	8.9999
AGG	chr1:64114087-64114303(+)$1	216	48	51	8.9999
AGG	chr4:99964333-99964614(+)$1	281	64	67	8.9999
AGG	chr22:36681869-36682098(-)$1	229	9	12	8.9999
AGG	chr2:219131549-219131804(-)$1	255	48	51	8.9999
AGG	chr11:62285718-62286044(-)$1	326	4	7	8.9999
AGG	chr15:72509696-72509934(-)$1	238	2	5	8.9999
AGG	chr19:36211242-36211514(+)$1	272	4	7	8.9999
agg	chr11:35684975-35685297(+)$1	322	6	9	8.9999
AGG	chr20:20022867-20023194(-)$1	327	32	35	8.9999
AGG	chr6:116600585-116600846(-)$1	261	4	7	8.9999
AGG	chr2:128479354-128479658(-)$1	304	94	97	8.9999
AGG	chr20:1115758-1116049(+)$1	291	3	6	8.9999
AGG	chr1:230313892-230314158(+)$1	266	21	24	8.9999
AGG	chr3:58116469-58116714(+)$1	245	9	12	8.9999
AGG	chr17:61907177-61907409(+)$1	232	4	7	8.9999
AGG	chr12:122723069-122723373(-)$1	304	100	103	8.9999
AGG	chr6:42978521-42978780(+)$1	259	25	28	8.9999
AGG	chr19:10505688-10505918(-)$1	230	4	7	8.9999
AGG	chr17:33325515-33325796(+)$1	281	3	6	8.9999
AGG	chr2:86705192-86705451(+)$1	259	98	101	8.9999
AGG	chr9:35711491-35711734(-)$1	243	15	18	8.9999
AGG	chr14:69349581-69349847(-)$1	266	73	76	8.9999
AGG	chr4:2909388-2909672(+)$1	284	91	94	8.9999

#otherMatches

#Struct PSSM
bll	chr22:36715536-36715778(-)$1	242	14	17	8.9999
:BB	chr2:27607746-27608012(-)$1	266	14	17	8.9999
:::	chr14:24650877-24651127(-)$1	250	18	21	8.9999
g22	chr2:54876720-54876946(+)$1	226	83	86	8.9999
[cc	chr2:96959045-96959266(-)$1	221	17	20	8.9999
pa]	chr11:61070422-61070656(-)$1	234	132	135	8.9999
{CC	chr6:52132562-52132812(-)$1	250	44	47	8.9999
$$b	chrX:77378323-77378540(+)$1	217	103	106	8.9999
:HH	chr10:75860643-75860892(+)$1	249	4	7	8.9999
"""	chr9:111680994-111681251(-)$1	257	68	71	8.9999
GGG	chr1:202731732-202731999(-)$1	267	11	14	8.9999
DDD	chr17:55187341-55187616(+)$1	275	42	45	8.9999
ccc	chr8:101716424-101716651(-)$1	227	31	34	8.9999
fff	chr1:17751976-17752242(-)$1	266	10	13	8.9999
eee	chr1:156290693-156290914(-)$1	221	25	28	8.9999
ddd	chrX:53603828-53604086(-)$1	258	11	14	8.9999
ddd	chr16:29708215-29708453(+)$1	238	54	57	8.9999
EEE	chr2:27258024-27258245(+)$1	221	0	3	8.9999
D{D	chr2:207012264-207012486(-)$1	222	8	11	8.9999
ii&	chr3:128532119-128532433(+)$1	314	48	51	8.9999
mmm	chr20:55088270-55088580(+)$1	310	116	119	8.9999
mcc	chr7:127569177-127569437(+)$1	260	61	64	8.9999
33f	chr1:36074744-36075112(-)$1	368	150	153	8.9999
eee	chr6:11185701-11186006(-)$1	305	33	36	8.9999
:bb	chr12:54744158-54744417(+)$1	259	3	6	8.9999
ddd	chr4:39510085-39510301(-)$1	216	19	22	8.9999
:bb	chr22:43023509-43023749(-)$1	240	53	56	8.9999
ddd	chr10:120796691-120796922(-)$1	231	99	102	8.9999
FFF	chr2:242168913-242169182(-)$1	269	3	6	8.9999
ddd	chr2:26456984-26457234(-)$1	250	137	140	8.9999
HHH	chrX:41075619-41075903(+)$1	284	18	21	8.9999
HHL	chr5:10262581-10262817(+)$1	236	18	21	8.9999
fff	chr11:71729341-71729609(-)$1	268	110	113	8.9999
{EE	chr5:176893672-176893934(-)$1	262	13	16	8.9999
eee	chr17:7481075-7481299(+)$1	224	11	14	8.9999
FFF	chr2:209106673-209106941(-)$1	268	70	73	8.9999
LBB	chr11:61094217-61094466(-)$1	249	55	58	8.9999
::e	chr8:101724780-101725022(-)$1	242	3	6	8.9999
ddd	chr11:62291058-62291284(-)$1	226	54	57	8.9999
c[b	chr10:43882640-43882891(-)$1	251	2	5	8.9999
eee	chr9:131353677-131353909(+)$1	232	41	44	8.9999
:::	chr17:40990009-40990265(+)$1	256	0	3	8.9999
bb2	chr2:216184287-216184541(+)$1	254	98	101	8.9999
:EE	chr9:131371141-131371356(+)$1	215	9	12	8.9999
ttd	chr12:57038854-57039061(-)$1	207	26	29	8.9999
c22	chr11:62299584-62299842(-)$1	258	74	77	8.9999
{BB	chr5:138266191-138266444(+)$1	253	19	22	8.9999
ggg	chr17:75488688-75488898(+)$1	210	60	63	8.9999
d55	chr8:22472259-22472568(+)$1	309	46	49	8.9999
III	chr17:78357499-78357809(+)$1	310	136	139	8.9999
ccc	chr11:61093025-61093280(-)$1	255	136	139	8.9999
fff	chr17:40049307-40049527(-)$1	220	16	19	8.9999
iid	chrM:14364-14599(-)$1	235	68	71	8.9999
JJJ	chr12:56553288-56553613(+)$1	325	26	29	8.9999
fff	chr11:61077695-61077991(-)$1	296	72	75	8.9999
JJJ	chr2:48032683-48032915(+)$1	232	71	74	8.9999
EFF	chr12:57884290-57884528(+)$1	238	6	9	8.9999
ndd	chr6:26056318-26056585(-)$1	267	8	11	8.9999
EEE	chr1:32660932-32661181(+)$1	249	29	32	8.9999
:BB	chr16:58749822-58750090(-)$1	268	5	8	8.9999
[cc	chrX:153581382-153581618(-)$1	236	44	47	8.9999
%%c	chr11:65623035-65623264(-)$1	229	61	64	8.9999
fff	chr14:62204911-62205188(+)$1	277	127	130	8.9999
:::	chr5:138223078-138223292(+)$1	214	206	209	8.9999
:::	chr8:144993016-144993310(-)$1	294	0	3	8.9999
III	chr14:77928884-77929155(+)$1	271	52	55	8.9999
JSS	chr19:18962883-18963129(+)$1	246	16	19	8.9999
:cc	chr1:226175734-226176192(-)$1	458	19	22	8.9999
mmm	chr3:48642011-48642251(-)$1	240	36	39	8.9999
:dd	chr5:71516585-71516935(-)$1	350	4	7	8.9999
fff	chr11:118453793-118454021(+)$1	228	4	7	8.9999
eee	chr3:139086925-139087184(-)$1	259	97	100	8.9999
!!d	chr2:96953133-96953394(-)$1	261	66	69	8.9999
ddd	chr2:232326570-232326818(-)$1	248	88	91	8.9999
FFF	chr17:57725629-57725862(+)$1	233	13	16	8.9999
fff	chr3:41277114-41277335(+)$1	221	60	63	8.9999
ggg	chr1:64114087-64114303(+)$1	216	48	51	8.9999
5bb	chr4:99964333-99964614(+)$1	281	64	67	8.9999
::e	chr22:36681869-36682098(-)$1	229	9	12	8.9999
FFF	chr2:219131549-219131804(-)$1	255	48	51	8.9999
"""	chr11:62285718-62286044(-)$1	326	4	7	8.9999
hhh	chr15:72509696-72509934(-)$1	238	2	5	8.9999
:::	chr19:36211242-36211514(+)$1	272	4	7	8.9999
:::	chr11:35684975-35685297(+)$1	322	6	9	8.9999
fff	chr20:20022867-20023194(-)$1	327	32	35	8.9999
!!f	chr6:116600585-116600846(-)$1	261	4	7	8.9999
ccc	chr2:128479354-128479658(-)$1	304	94	97	8.9999
FFF	chr20:1115758-1116049(+)$1	291	3	6	8.9999
ggg	chr1:230313892-230314158(+)$1	266	21	24	8.9999
f[b	chr3:58116469-58116714(+)$1	245	9	12	8.9999
:DD	chr17:61907177-61907409(+)$1	232	4	7	8.9999
b]a	chr12:122723069-122723373(-)$1	304	100	103	8.9999
eee	chr6:42978521-42978780(+)$1	259	25	28	8.9999
:II	chr19:10505688-10505918(-)$1	230	4	7	8.9999
::I	chr17:33325515-33325796(+)$1	281	3	6	8.9999
bb2	chr2:86705192-86705451(+)$1	259	98	101	8.9999
EEE	chr9:35711491-35711734(-)$1	243	15	18	8.9999
bcc	chr14:69349581-69349847(-)$1	266	73	76	8.9999
eee	chr4:2909388-2909672(+)$1	284	91	94	8.9999

#DB
(..	chr22:36715536-36715778(-)$1	1	14	17	8.9999
.((	chr2:27607746-27608012(-)$1	1	14	17	8.9999
...	chr14:24650877-24651127(-)$1	1	18	21	8.9999
)..	chr2:54876720-54876946(+)$1	1	83	86	8.9999
.((	chr2:96959045-96959266(-)$1	1	17	20	8.9999
.).	chr11:61070422-61070656(-)$1	1	132	135	8.9999
.((	chr6:52132562-52132812(-)$1	1	44	47	8.9999
..(	chrX:77378323-77378540(+)$1	1	103	106	8.9999
.((	chr10:75860643-75860892(+)$1	1	4	7	8.9999
...	chr9:111680994-111681251(-)$1	1	68	71	8.9999
(((	chr1:202731732-202731999(-)$1	1	11	14	8.9999
(((	chr17:55187341-55187616(+)$1	1	42	45	8.9999
)))	chr8:101716424-101716651(-)$1	1	31	34	8.9999
(((	chr1:17751976-17752242(-)$1	1	10	13	8.9999
(((	chr1:156290693-156290914(-)$1	1	25	28	8.9999
(((	chrX:53603828-53604086(-)$1	1	11	14	8.9999
)))	chr16:29708215-29708453(+)$1	1	54	57	8.9999
(((	chr2:27258024-27258245(+)$1	1	0	3	8.9999
(.(	chr2:207012264-207012486(-)$1	1	8	11	8.9999
((.	chr3:128532119-128532433(+)$1	1	48	51	8.9999
...	chr20:55088270-55088580(+)$1	1	116	119	8.9999
.))	chr7:127569177-127569437(+)$1	1	61	64	8.9999
..)	chr1:36074744-36075112(-)$1	1	150	153	8.9999
(((	chr6:11185701-11186006(-)$1	1	33	36	8.9999
.((	chr12:54744158-54744417(+)$1	1	3	6	8.9999
)))	chr4:39510085-39510301(-)$1	1	19	22	8.9999
.((	chr22:43023509-43023749(-)$1	1	53	56	8.9999
)))	chr10:120796691-120796922(-)$1	1	99	102	8.9999
(((	chr2:242168913-242169182(-)$1	1	3	6	8.9999
)))	chr2:26456984-26457234(-)$1	1	137	140	8.9999
(((	chrX:41075619-41075903(+)$1	1	18	21	8.9999
((.	chr5:10262581-10262817(+)$1	1	18	21	8.9999
)))	chr11:71729341-71729609(-)$1	1	110	113	8.9999
.((	chr5:176893672-176893934(-)$1	1	13	16	8.9999
(((	chr17:7481075-7481299(+)$1	1	11	14	8.9999
(((	chr2:209106673-209106941(-)$1	1	70	73	8.9999
.((	chr11:61094217-61094466(-)$1	1	55	58	8.9999
..(	chr8:101724780-101725022(-)$1	1	3	6	8.9999
)))	chr11:62291058-62291284(-)$1	1	54	57	8.9999
(.(	chr10:43882640-43882891(-)$1	1	2	5	8.9999
(((	chr9:131353677-131353909(+)$1	1	41	44	8.9999
...	chr17:40990009-40990265(+)$1	1	0	3	8.9999
)).	chr2:216184287-216184541(+)$1	1	98	101	8.9999
.((	chr9:131371141-131371356(+)$1	1	9	12	8.9999
..)	chr12:57038854-57039061(-)$1	1	26	29	8.9999
)..	chr11:62299584-62299842(-)$1	1	74	77	8.9999
.((	chr5:138266191-138266444(+)$1	1	19	22	8.9999
(((	chr17:75488688-75488898(+)$1	1	60	63	8.9999
)..	chr8:22472259-22472568(+)$1	1	46	49	8.9999
(((	chr17:78357499-78357809(+)$1	1	136	139	8.9999
(((	chr11:61093025-61093280(-)$1	1	136	139	8.9999
(((	chr17:40049307-40049527(-)$1	1	16	19	8.9999
(((	chrM:14364-14599(-)$1	1	68	71	8.9999
(((	chr12:56553288-56553613(+)$1	1	26	29	8.9999
(((	chr11:61077695-61077991(-)$1	1	72	75	8.9999
(((	chr2:48032683-48032915(+)$1	1	71	74	8.9999
(((	chr12:57884290-57884528(+)$1	1	6	9	8.9999
.))	chr6:26056318-26056585(-)$1	1	8	11	8.9999
(((	chr1:32660932-32661181(+)$1	1	29	32	8.9999
.((	chr16:58749822-58750090(-)$1	1	5	8	8.9999
.((	chrX:153581382-153581618(-)$1	1	44	47	8.9999
..(	chr11:65623035-65623264(-)$1	1	61	64	8.9999
(((	chr14:62204911-62205188(+)$1	1	127	130	8.9999
...	chr5:138223078-138223292(+)$1	1	206	209	8.9999
...	chr8:144993016-144993310(-)$1	1	0	3	8.9999
(((	chr14:77928884-77929155(+)$1	1	52	55	8.9999
(..	chr19:18962883-18963129(+)$1	1	16	19	8.9999
.((	chr1:226175734-226176192(-)$1	1	19	22	8.9999
...	chr3:48642011-48642251(-)$1	1	36	39	8.9999
.((	chr5:71516585-71516935(-)$1	1	4	7	8.9999
(((	chr11:118453793-118454021(+)$1	1	4	7	8.9999
(((	chr3:139086925-139087184(-)$1	1	97	100	8.9999
..(	chr2:96953133-96953394(-)$1	1	66	69	8.9999
(((	chr2:232326570-232326818(-)$1	1	88	91	8.9999
(((	chr17:57725629-57725862(+)$1	1	13	16	8.9999
)))	chr3:41277114-41277335(+)$1	1	60	63	8.9999
)))	chr1:64114087-64114303(+)$1	1	48	51	8.9999
.))	chr4:99964333-99964614(+)$1	1	64	67	8.9999
..(	chr22:36681869-36682098(-)$1	1	9	12	8.9999
(((	chr2:219131549-219131804(-)$1	1	48	51	8.9999
...	chr11:62285718-62286044(-)$1	1	4	7	8.9999
(((	chr15:72509696-72509934(-)$1	1	2	5	8.9999
...	chr19:36211242-36211514(+)$1	1	4	7	8.9999
...	chr11:35684975-35685297(+)$1	1	6	9	8.9999
)))	chr20:20022867-20023194(-)$1	1	32	35	8.9999
..(	chr6:116600585-116600846(-)$1	1	4	7	8.9999
(((	chr2:128479354-128479658(-)$1	1	94	97	8.9999
(((	chr20:1115758-1116049(+)$1	1	3	6	8.9999
(((	chr1:230313892-230314158(+)$1	1	21	24	8.9999
(.(	chr3:58116469-58116714(+)$1	1	9	12	8.9999
.((	chr17:61907177-61907409(+)$1	1	4	7	8.9999
).)	chr12:122723069-122723373(-)$1	1	100	103	8.9999
(((	chr6:42978521-42978780(+)$1	1	25	28	8.9999
.((	chr19:10505688-10505918(-)$1	1	4	7	8.9999
..(	chr17:33325515-33325796(+)$1	1	3	6	8.9999
)).	chr2:86705192-86705451(+)$1	1	98	101	8.9999
(((	chr9:35711491-35711734(-)$1	1	15	18	8.9999
(((	chr14:69349581-69349847(-)$1	1	73	76	8.9999
(((	chr4:2909388-2909672(+)$1	1	91	94	8.9999

#PSSM
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_CDS_m3_run2.nuc.txt

#NT
UAUUUUUAUCCUU	chr1:205069188-205069467(-)$1	279	48	61	17.8679
AAUGUUAAUUUUU	chr16:66847443-66847665(-)$1	222	38	51	14.6603
UAUUUUUAUUUUU	chr6:34951028-34951267(+)$1	239	43	56	25.5094
UGUUUUUAUUCUG	chr16:23101935-23102225(-)$1	290	81	94	14.5660
UAUUUUGAUGUUU	chr6:79700520-79700761(-)$1	241	189	202	18.2452
CAUUUUUUUUUUU	chr2:27591950-27592179(-)$1	229	76	89	20.8867
UAUCUAUUUUUUU	chr15:40326425-40326655(+)$1	230	83	96	15.1320
UUUUUUUAAUUUA	chr11:86868282-86868546(+)$1	264	84	97	16.3584
uuauuuuauuuua	chr2:152298339-152298600(+)$1	261	225	238	16.6415
UAGUUUUAUUUUU	chr3:154018335-154018588(-)$1	253	208	221	21.9245
CAUUUUGAUUAUU	chr5:98218784-98219030(-)$1	246	63	76	14.6603
CAUUUAUAUAUUU	chr13:103513876-103514155(+)$1	279	202	215	15.0377
UCAUUUUAUCUUU	chr5:33456007-33456257(+)$1	250	231	244	16.6415
UCUUUUUUUUUUU	chr2:61566682-61566916(-)$1	234	76	89	21.1698
AAUUUUUCUCUUU	chr12:12339846-12340101(-)$1	255	25	38	16.9245
AUUUUUUAAUUUU	chr1:169521704-169521953(-)$1	249	224	237	17.1132
UUUAUUUAUUUUU	chr1:214813182-214813430(+)$1	248	62	75	18.7169
UAUUCUCAUUUUU	chr6:532368-532604(-)$1	236	213	226	18.0566
UUUUUCUGUUUUU	chr12:70732393-70732657(+)$1	264	215	228	16.3584
UACUAUGAUUUUU	chr12:64875528-64875812(+)$1	284	22	35	14.4716
UAAUUUUGUCUUU	chr2:120703869-120704103(+)$1	234	29	42	16.5471
UUUUGUUAGUUUU	chr7:158580970-158581197(-)$1	227	80	93	15.5094
UAUUUCUUUUUAU	chr10:129201227-129201453(+)$1	226	190	203	15.2264
AAUUUUUUUCUCU	chr8:101299627-101299836(-)$1	209	140	153	13.7169
UAUUUUUAACUUA	chr10:91492609-91492850(+)$1	241	26	39	15.4150
GAUUUUUAUUAUU	chr10:88256853-88257079(-)$1	226	142	155	18.0566
AAUUUUUUGUUUU	chrX:119674130-119674490(-)$1	360	58	71	17.3018
CCUUUAUGUUUUU	chr4:83791377-83791615(-)$1	238	20	33	13.4339
GAUUUUCCUUUUU	chr16:46998474-46998713(-)$1	239	193	206	16.2641
CAGUUUUUUUUUU	chr2:54124963-54125233(-)$1	270	35	48	17.3018
UAAUUUAAAUUUU	chr7:151853273-151853496(-)$1	223	38	51	15.3207
UAUUUUUUUUUUC	chr17:35627580-35627853(-)$1	273	75	88	19.8490
uauuuuuuucuuu	chr2:136690249-136690487(-)$1	238	43	56	20.5094
UAUUUUGAAUUUA	chr3:44794675-44795031(-)$1	356	206	219	15.0377
UGUUUUUACUUUA	chr13:96264199-96264467(-)$1	268	239	252	15.6037
UAAUCUUUUUUUU	chr8:121468750-121469015(+)$1	265	25	38	16.7358
AACUUUUUGUUUU	chr10:93756026-93756235(+)$1	209	83	96	13.9056
UGCUUUUAUGUUU	chr4:47900874-47901096(-)$1	222	181	194	15.7924
AAUUUUUAUUUUU	chr2:38540214-38540476(-)$1	262	67	80	22.7735
UAUUUUUAAAUUU	chr5:37048611-37048839(+)$1	228	179	192	18.5283
GAUUUUUUUUUAU	chr7:92888758-92889036(+)$1	278	32	45	16.4528
UAUUUACAUAUUU	chr3:182769849-182770112(-)$1	263	62	75	14.2830
UCAUCUUGUUUUU	chr2:240946631-240946842(-)$1	211	34	47	13.3396
uccuuuaauuuuu	chr3:160254483-160254729(-)$1	246	82	95	15.8867
GGUUUUUCUUUUU	chr11:68337121-68337420(+)$1	299	76	89	17.2075
UUUUUUUAUUUCG	chr2:48049262-48049510(-)$1	248	44	57	15.3207
UCUUCUUUUUUCU	chr12:70671861-70672122(+)$1	261	207	220	13.2452
UAUUUUCAUUUCC	chr9:26860952-26861214(-)$1	262	61	74	13.9999
UGAUUUUACUUUU	chr8:141828880-141829153(-)$1	273	210	223	15.9811
uuuuuuucuuuuu	chr7:29433194-29433422(+)$1	228	80	93	20.6037
CAUGAUUAUUUUU	chr17:11984637-11984944(+)$1	307	221	234	14.1886
uauuuuuauuuuu	chr14:39773394-39773606(+)$1	212	39	52	25.5094

#otherMatches

#Struct PSSM
::::::::::::F	chr2:32772894-32773141(+)$1	247	7	20	15.6981
e++++++++++++	chr1:205069188-205069467(-)$1	279	48	61	17.8679
qqdddd:::::::	chr16:66847443-66847665(-)$1	222	38	51	14.6603
g!!bb[hhhhhhh	chr6:34951028-34951267(+)$1	239	43	56	25.5094
===========dd	chr16:23101935-23102225(-)$1	290	81	94	14.5660
cccmmmmccc]gg	chr6:79700520-79700761(-)$1	241	189	202	18.2452
c]iiiiiiiii]c	chr2:27591950-27592179(-)$1	229	76	89	20.8867
:::::::GGGGGG	chr15:40326425-40326655(+)$1	230	83	96	15.1320
===========66	chr11:86868282-86868546(+)$1	264	84	97	16.3584
hhhhh]dddd]ee	chr2:152298339-152298600(+)$1	261	225	238	16.6415
ssssssss=====	chr3:154018335-154018588(-)$1	253	208	221	21.9245
ee22ffffff:::	chr5:98218784-98219030(-)$1	246	63	76	14.6603
:::::hhhhhhhh	chr13:103513876-103514155(+)$1	279	202	215	15.0377
:::HHHHHHHH}E	chr5:33456007-33456257(+)$1	250	231	244	16.6415
eeee^^^^^^^^^	chr2:61566682-61566916(-)$1	234	76	89	21.1698
=======]ccc::	chr12:12339846-12340101(-)$1	255	25	38	16.9245
:gggggggmmmmg	chr1:169521704-169521953(-)$1	249	224	237	17.1132
ddffffffmmmmf	chr1:214813182-214813430(+)$1	248	62	75	18.7169
:::CCCYYEEEEE	chr6:532368-532604(-)$1	236	213	226	18.0566
::::HHHHHHHH:	chr12:70732393-70732657(+)$1	264	215	228	16.3584
FKKEEEEE:::::	chr12:64875528-64875812(+)$1	284	22	35	14.4716
GMMMMCCCMMMMI	chr2:120703869-120704103(+)$1	234	29	42	16.5471
ppppppphhhhhh	chr7:158580970-158581197(-)$1	227	80	93	15.5094
ffffffggggggg	chr10:129201227-129201453(+)$1	226	190	203	15.2264
!eeeee[cccnnn	chr8:101299627-101299836(-)$1	209	140	153	13.7169
WWWWWWWWWWJJJ	chr10:91492609-91492850(+)$1	241	26	39	15.4150
d:::::::FFFFF	chr10:88256853-88257079(-)$1	226	142	155	18.0566
mhhhhhhhhgggg	chrX:119674130-119674490(-)$1	360	58	71	17.3018
hhhhhhhhnnnnn	chr4:83791377-83791615(-)$1	238	20	33	13.4339
::JJJJJJJJJJ~	chr16:46998474-46998713(-)$1	239	193	206	16.2641
+++++++++++++	chr2:54124963-54125233(-)$1	270	35	48	17.3018
++++++++++++e	chr7:151853273-151853496(-)$1	223	38	51	15.3207
::::::iiiiiii	chr17:35627580-35627853(-)$1	273	75	88	19.8490
ffffff:::====	chr2:136690249-136690487(-)$1	238	43	56	20.5094
OOOOHHHHHHHH:	chr3:44794675-44795031(-)$1	356	206	219	15.0377
mggggggg333dd	chr13:96264199-96264467(-)$1	268	239	252	15.6037
fffqqqqqqqqff	chr8:121468750-121469015(+)$1	265	25	38	16.7358
ggggsssssssss	chr10:93756026-93756235(+)$1	209	83	96	13.9056
hhhhhh:::::FF	chr4:47900874-47901096(-)$1	222	181	194	15.7924
========:::::	chr2:38540214-38540476(-)$1	262	67	80	22.7735
vvvvvvvvvvfff	chr5:37048611-37048839(+)$1	228	179	192	18.5283
##==========s	chr7:92888758-92889036(+)$1	278	32	45	16.4528
i::DDDDLLLJJJ	chr3:182769849-182770112(-)$1	263	62	75	14.2830
&&ffffff[hhhh	chr2:240946631-240946842(-)$1	211	34	47	13.3396
]dddd]ffffff]	chr3:160254483-160254729(-)$1	246	82	95	15.8867
f[dddd[aooooo	chr11:68337121-68337420(+)$1	299	76	89	17.2075
iiiiii[eeeee[	chr2:48049262-48049510(-)$1	248	44	57	15.3207
^^^^^^^^^^^^^	chr12:70671861-70672122(+)$1	261	207	220	13.2452
iiiiiii[dddd[	chr9:26860952-26861214(-)$1	262	61	74	13.9999
ssssffffff]gg	chr8:141828880-141829153(-)$1	273	210	223	15.9811
vvvvvvvvvvvff	chr7:29433194-29433422(+)$1	228	80	93	20.6037
cc666666ccc22	chr17:11984637-11984944(+)$1	307	221	234	14.1886
f!!ggggggg[ee	chr14:39773394-39773606(+)$1	212	39	52	25.5094

#DB
............(	chr2:32772894-32773141(+)$1	1	7	20	15.6981
(............	chr1:205069188-205069467(-)$1	1	48	61	17.8679
..)))).......	chr16:66847443-66847665(-)$1	1	38	51	14.6603
(..((.(((((((	chr6:34951028-34951267(+)$1	1	43	56	25.5094
)))))))))))))	chr16:23101935-23102225(-)$1	1	81	94	14.5660
(((....))).))	chr6:79700520-79700761(-)$1	1	189	202	18.2452
).))))))))).)	chr2:27591950-27592179(-)$1	1	76	89	20.8867
.......))))))	chr15:40326425-40326655(+)$1	1	83	96	15.1320
)))))))))))..	chr11:86868282-86868546(+)$1	1	84	97	16.3584
))))).)))).))	chr2:152298339-152298600(+)$1	1	225	238	16.6415
........)))))	chr3:154018335-154018588(-)$1	1	208	221	21.9245
))..))))))...	chr5:98218784-98219030(-)$1	1	63	76	14.6603
.....((((((((	chr13:103513876-103514155(+)$1	1	202	215	15.0377
...)))))))).)	chr5:33456007-33456257(+)$1	1	231	244	16.6415
((((.........	chr2:61566682-61566916(-)$1	1	76	89	21.1698
))))))).)))..	chr12:12339846-12340101(-)$1	1	25	38	16.9245
.(((((((....)	chr1:169521704-169521953(-)$1	1	224	237	17.1132
((((((((....)	chr1:214813182-214813430(+)$1	1	62	75	18.7169
...)))..)))))	chr6:532368-532604(-)$1	1	213	226	18.0566
....)))))))).	chr12:70732393-70732657(+)$1	1	215	228	16.3584
(..(((((.....	chr12:64875528-64875812(+)$1	1	22	35	14.4716
(....(((....(	chr2:120703869-120704103(+)$1	1	29	42	16.5471
.......))))))	chr7:158580970-158581197(-)$1	1	80	93	15.5094
)))))))))))))	chr10:129201227-129201453(+)$1	1	190	203	15.2264
.(((((.(((...	chr8:101299627-101299836(-)$1	1	140	153	13.7169
..........(((	chr10:91492609-91492850(+)$1	1	26	39	15.4150
).......)))))	chr10:88256853-88257079(-)$1	1	142	155	18.0566
.))))))))((((	chrX:119674130-119674490(-)$1	1	58	71	17.3018
((((((((.....	chr4:83791377-83791615(-)$1	1	20	33	13.4339
..)))))))))).	chr16:46998474-46998713(-)$1	1	193	206	16.2641
.............	chr2:54124963-54125233(-)$1	1	35	48	17.3018
............(	chr7:151853273-151853496(-)$1	1	38	51	15.3207
......(((((((	chr17:35627580-35627853(-)$1	1	75	88	19.8490
))))))...((((	chr2:136690249-136690487(-)$1	1	43	56	20.5094
....((((((((.	chr3:44794675-44795031(-)$1	1	206	219	15.0377
.)))))))...))	chr13:96264199-96264467(-)$1	1	239	252	15.6037
(((........))	chr8:121468750-121469015(+)$1	1	25	38	16.7358
((((.........	chr10:93756026-93756235(+)$1	1	83	96	13.9056
)))))).....))	chr4:47900874-47901096(-)$1	1	181	194	15.7924
)))))))).....	chr2:38540214-38540476(-)$1	1	67	80	22.7735
..........)))	chr5:37048611-37048839(+)$1	1	179	192	18.5283
..((((((((((.	chr7:92888758-92889036(+)$1	1	32	45	16.4528
)..((((...(((	chr3:182769849-182770112(-)$1	1	62	75	14.2830
..((((((.((((	chr2:240946631-240946842(-)$1	1	34	47	13.3396
.)))).)))))).	chr3:160254483-160254729(-)$1	1	82	95	15.8867
(.((((.(.....	chr11:68337121-68337420(+)$1	1	76	89	17.2075
((((((.(((((.	chr2:48049262-48049510(-)$1	1	44	57	15.3207
.............	chr12:70671861-70672122(+)$1	1	207	220	13.2452
(((((((.((((.	chr9:26860952-26861214(-)$1	1	61	74	13.9999
....)))))).))	chr8:141828880-141829153(-)$1	1	210	223	15.9811
...........))	chr7:29433194-29433422(+)$1	1	80	93	20.6037
))......)))..	chr17:11984637-11984944(+)$1	1	221	234	14.1886
(..(((((((.((	chr14:39773394-39773606(+)$1	1	39	52	25.5094

#PSSM
U : 0.58	A : 0.13	C : 0.11	u : 0.09	G : 0.07	
A : 0.58	U : 0.13	G : 0.09	C : 0.09	u : 0.03	a : 0.03	c : 0.01	
U : 0.69	A : 0.11	C : 0.05	u : 0.05	G : 0.03	a : 0.01	c : 0.01	
U : 0.83	u : 0.09	G : 0.03	C : 0.01	A : 0.01	
U : 0.75	u : 0.09	C : 0.07	G : 0.03	A : 0.03	
U : 0.79	u : 0.09	A : 0.07	C : 0.03	
U : 0.71	G : 0.07	u : 0.07	C : 0.07	A : 0.03	a : 0.01	
A : 0.54	U : 0.22	G : 0.07	a : 0.05	C : 0.05	u : 0.01	c : 0.01	
U : 0.69	A : 0.11	u : 0.09	G : 0.05	C : 0.03	
U : 0.69	C : 0.11	u : 0.07	A : 0.05	G : 0.03	c : 0.01	
U : 0.83	u : 0.09	C : 0.03	A : 0.03	
U : 0.79	u : 0.09	C : 0.07	A : 0.03	
U : 0.73	A : 0.09	u : 0.07	G : 0.03	C : 0.03	a : 0.01	

#score	895.4905660377352
#seq	53
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_CDS_m2_run2.nuc.txt

#NT
AUGUU	chr2:181851949-181852217(+)$1	268	253	258	14.9999
AUGUU	chr12:11285968-11286254(-)$1	286	194	199	14.9999
AUGUU	chr15:62160025-62160316(-)$1	291	194	199	14.9999
AUGUU	chr1:1326841-1327062(-)$1	221	24	29	14.9999
AUGUU	chr21:40670111-40670449(-)$1	338	4	9	14.9999
AUGUU	chr6:139238598-139238846(-)$1	248	180	185	14.9999
AUGUU	chr10:69832720-69832985(-)$1	265	120	125	14.9999
AUGUU	chr2:160253480-160253821(-)$1	341	185	190	14.9999
AUGUU	chr16:24803033-24803346(+)$1	313	244	249	14.9999
AUGUU	chr1:78413064-78413335(-)$1	271	250	255	14.9999
AUGUU	chr3:183479934-183480207(+)$1	273	173	178	14.9999
AUGUU	chr7:148514170-148514435(-)$1	265	41	46	14.9999
AUGUU	chr5:179046282-179046503(-)$1	221	48	53	14.9999
AUGUU	chr1:1326801-1327041(-)$1	240	3	8	14.9999
AUGUU	chr9:102888684-102889017(+)$1	333	176	181	14.9999
AUGUU	chr19:30461923-30462205(+)$1	282	91	96	14.9999
AUGUU	chr2:159389847-159390115(+)$1	268	49	54	14.9999
AUGUU	chr22:44340375-44340686(+)$1	311	105	110	14.9999
AUGUU	chr3:179092840-179093117(+)$1	277	118	123	14.9999
AUGUU	chr6:128642925-128643210(-)$1	285	52	57	14.9999
AUGUU	chr4:95376455-95376733(+)$1	278	109	114	14.9999
AUGUU	chr9:111681066-111681331(-)$1	265	107	112	14.9999
AUGUU	chr5:179046303-179046525(-)$1	222	70	75	14.9999
AUGUU	chr2:228416515-228416780(+)$1	265	97	102	14.9999
AUGUU	chr2:160619375-160619652(+)$1	277	204	209	14.9999
AUGUU	chr2:186664438-186664724(-)$1	286	88	93	14.9999
AUGUU	chr2:15747093-15747442(+)$1	349	112	117	14.9999
auguu	chr17:62518668-62518929(+)$1	261	64	69	14.9999
AUGUU	chr3:42661031-42661257(+)$1	226	87	92	14.9999
AUGUU	chr18:263917-264175(-)$1	258	11	16	14.9999
AUGUU	chr11:28143523-28143798(+)$1	275	23	28	14.9999
AUGUU	chr2:109102760-109103006(+)$1	246	6	11	14.9999
AUGUU	chr17:25634688-25634946(+)$1	258	19	24	14.9999
AUGUU	chr17:25634665-25634888(+)$1	223	42	47	14.9999
AUGuu	chr12:108936504-108936798(-)$1	294	79	84	14.9999
AUGUU	chr20:42087683-42087916(+)$1	233	30	35	14.9999
AUGUU	chr17:62510448-62510709(+)$1	261	213	218	14.9999
AUGUU	chr8:124789440-124789789(+)$1	349	151	156	14.9999
AUGUU	chr2:242591178-242591472(+)$1	294	82	87	14.9999
AUGUU	chrX:122757334-122757630(-)$1	296	59	64	14.9999
AUGUU	chr3:123671298-123671654(-)$1	356	55	60	14.9999
AUGUU	chr12:112525214-112525613(-)$1	399	312	317	14.9999
AUGUU	chr4:187513768-187514021(-)$1	253	78	83	14.9999
AUGUU	chr3:169888898-169889231(-)$1	333	235	240	14.9999
AUGUU	chr4:68376610-68376964(-)$1	354	157	162	14.9999
AUGUU	chr17:65358885-65359192(-)$1	307	85	90	14.9999
AUGUU	chr6:160174255-160174600(+)$1	345	141	146	14.9999
AUGUU	chr13:20593657-20593960(+)$1	303	239	244	14.9999
AUGUU	chr20:5996005-5996260(+)$1	255	98	103	14.9999
AUGUU	chr2:166781029-166781307(-)$1	278	54	59	14.9999
AUGUU	chr11:14535769-14536078(-)$1	309	141	146	14.9999
AUGUU	chr12:100955406-100955774(+)$1	368	282	287	14.9999
AUGUU	chr7:157023912-157024251(+)$1	339	150	155	14.9999
AUGUU	chr3:171851284-171851547(+)$1	263	112	117	14.9999
AUGUU	chr4:113189445-113189774(+)$1	329	158	163	14.9999
AUGUU	chr20:47589559-47589846(+)$1	287	107	112	14.9999
AUGUU	chr5:130785620-130786023(-)$1	403	173	178	14.9999
AUGUU	chr11:85689018-85689346(-)$1	328	54	59	14.9999
AUGUU	chr1:201828017-201828298(+)$1	281	107	112	14.9999
AUGUU	chr12:11174412-11174679(-)$1	267	87	92	14.9999
AUGUU	chr14:50298512-50298878(-)$1	366	23	28	14.9999

#otherMatches

#Struct PSSM
:::::	chr10:64952799-64953076(-)$1	277	175	180	14.9999
gg:::	chr2:181851949-181852217(+)$1	268	253	258	14.9999
:::::	chr12:11285968-11286254(-)$1	286	194	199	14.9999
ppppe	chr15:62160025-62160316(-)$1	291	194	199	14.9999
eeeeq	chr1:1326841-1327062(-)$1	221	24	29	14.9999
ooooo	chr21:40670111-40670449(-)$1	338	4	9	14.9999
]ccc2	chr6:139238598-139238846(-)$1	248	180	185	14.9999
:::EE	chr10:69832720-69832985(-)$1	265	120	125	14.9999
eeeee	chr2:160253480-160253821(-)$1	341	185	190	14.9999
ellle	chr16:24803033-24803346(+)$1	313	244	249	14.9999
::AYY	chr1:78413064-78413335(-)$1	271	250	255	14.9999
]bb22	chr3:183479934-183480207(+)$1	273	173	178	14.9999
fffff	chr7:148514170-148514435(-)$1	265	41	46	14.9999
ppppp	chr5:179046282-179046503(-)$1	221	48	53	14.9999
::DDD	chr1:1326801-1327041(-)$1	240	3	8	14.9999
dddd#	chr9:102888684-102889017(+)$1	333	176	181	14.9999
sssss	chr19:30461923-30462205(+)$1	282	91	96	14.9999
!!ccc	chr2:159389847-159390115(+)$1	268	49	54	14.9999
NNNNN	chr22:44340375-44340686(+)$1	311	105	110	14.9999
$$$ff	chr3:179092840-179093117(+)$1	277	118	123	14.9999
IIIIM	chr6:128642925-128643210(-)$1	285	52	57	14.9999
d]ccc	chr4:95376455-95376733(+)$1	278	109	114	14.9999
###hh	chr9:111681066-111681331(-)$1	265	107	112	14.9999
G{BB{	chr5:179046303-179046525(-)$1	222	70	75	14.9999
d]ccc	chr2:228416515-228416780(+)$1	265	97	102	14.9999
rrrrr	chr2:160619375-160619652(+)$1	277	204	209	14.9999
FFFFC	chr2:186664438-186664724(-)$1	286	88	93	14.9999
:eeee	chr2:15747093-15747442(+)$1	349	112	117	14.9999
"""hh	chr17:62518668-62518929(+)$1	261	64	69	14.9999
JJJJJ	chr3:42661031-42661257(+)$1	226	87	92	14.9999
c[bbm	chr18:263917-264175(-)$1	258	11	16	14.9999
hhhff	chr11:28143523-28143798(+)$1	275	23	28	14.9999
[ffff	chr2:109102760-109103006(+)$1	246	6	11	14.9999
qdddd	chr17:25634688-25634946(+)$1	258	19	24	14.9999
b::::	chr17:25634665-25634888(+)$1	223	42	47	14.9999
JJJJJ	chr12:108936504-108936798(-)$1	294	79	84	14.9999
"gggg	chr20:42087683-42087916(+)$1	233	30	35	14.9999
EEE@@	chr17:62510448-62510709(+)$1	261	213	218	14.9999
44iii	chr8:124789440-124789789(+)$1	349	151	156	14.9999
%%ggg	chr2:242591178-242591472(+)$1	294	82	87	14.9999
J::ee	chrX:122757334-122757630(-)$1	296	59	64	14.9999
2dddd	chr3:123671298-123671654(-)$1	356	55	60	14.9999
iii33	chr12:112525214-112525613(-)$1	399	312	317	14.9999
eccc4	chr4:187513768-187514021(-)$1	253	78	83	14.9999
cccpp	chr3:169888898-169889231(-)$1	333	235	240	14.9999
::::e	chr4:68376610-68376964(-)$1	354	157	162	14.9999
b22ff	chr17:65358885-65359192(-)$1	307	85	90	14.9999
:hhhh	chr6:160174255-160174600(+)$1	345	141	146	14.9999
hhhhh	chr13:20593657-20593960(+)$1	303	239	244	14.9999
>>>>>	chr20:5996005-5996260(+)$1	255	98	103	14.9999
mmccc	chr2:166781029-166781307(-)$1	278	54	59	14.9999
2dddd	chr11:14535769-14536078(-)$1	309	141	146	14.9999
hhhhh	chr12:100955406-100955774(+)$1	368	282	287	14.9999
qqccc	chr7:157023912-157024251(+)$1	339	150	155	14.9999
ddddy	chr3:171851284-171851547(+)$1	263	112	117	14.9999
LEEEE	chr4:113189445-113189774(+)$1	329	158	163	14.9999
c]ddd	chr20:47589559-47589846(+)$1	287	107	112	14.9999
eee::	chr5:130785620-130786023(-)$1	403	173	178	14.9999
dddd[	chr11:85689018-85689346(-)$1	328	54	59	14.9999
=====	chr1:201828017-201828298(+)$1	281	107	112	14.9999
d[ccc	chr12:11174412-11174679(-)$1	267	87	92	14.9999
:::::	chr14:50298512-50298878(-)$1	366	23	28	14.9999

#DB
.....	chr10:64952799-64953076(-)$1	1	175	180	14.9999
))...	chr2:181851949-181852217(+)$1	1	253	258	14.9999
.....	chr12:11285968-11286254(-)$1	1	194	199	14.9999
....)	chr15:62160025-62160316(-)$1	1	194	199	14.9999
((((.	chr1:1326841-1327062(-)$1	1	24	29	14.9999
.....	chr21:40670111-40670449(-)$1	1	4	9	14.9999
.))).	chr6:139238598-139238846(-)$1	1	180	185	14.9999
...))	chr10:69832720-69832985(-)$1	1	120	125	14.9999
(((((	chr2:160253480-160253821(-)$1	1	185	190	14.9999
(...)	chr16:24803033-24803346(+)$1	1	244	249	14.9999
..)..	chr1:78413064-78413335(-)$1	1	250	255	14.9999
.))..	chr3:183479934-183480207(+)$1	1	173	178	14.9999
(((((	chr7:148514170-148514435(-)$1	1	41	46	14.9999
.....	chr5:179046282-179046503(-)$1	1	48	53	14.9999
..(((	chr1:1326801-1327041(-)$1	1	3	8	14.9999
((((.	chr9:102888684-102889017(+)$1	1	176	181	14.9999
.....	chr19:30461923-30462205(+)$1	1	91	96	14.9999
..(((	chr2:159389847-159390115(+)$1	1	49	54	14.9999
.....	chr22:44340375-44340686(+)$1	1	105	110	14.9999
...((	chr3:179092840-179093117(+)$1	1	118	123	14.9999
((((.	chr6:128642925-128643210(-)$1	1	52	57	14.9999
).)))	chr4:95376455-95376733(+)$1	1	109	114	14.9999
...((	chr9:111681066-111681331(-)$1	1	107	112	14.9999
(.((.	chr5:179046303-179046525(-)$1	1	70	75	14.9999
).)))	chr2:228416515-228416780(+)$1	1	97	102	14.9999
.....	chr2:160619375-160619652(+)$1	1	204	209	14.9999
(((((	chr2:186664438-186664724(-)$1	1	88	93	14.9999
.((((	chr2:15747093-15747442(+)$1	1	112	117	14.9999
...((	chr17:62518668-62518929(+)$1	1	64	69	14.9999
(((((	chr3:42661031-42661257(+)$1	1	87	92	14.9999
(.((.	chr18:263917-264175(-)$1	1	11	16	14.9999
(((((	chr11:28143523-28143798(+)$1	1	23	28	14.9999
.((((	chr2:109102760-109103006(+)$1	1	6	11	14.9999
.))))	chr17:25634688-25634946(+)$1	1	19	24	14.9999
)....	chr17:25634665-25634888(+)$1	1	42	47	14.9999
(((((	chr12:108936504-108936798(-)$1	1	79	84	14.9999
.((((	chr20:42087683-42087916(+)$1	1	30	35	14.9999
)))..	chr17:62510448-62510709(+)$1	1	213	218	14.9999
..)))	chr8:124789440-124789789(+)$1	1	151	156	14.9999
..(((	chr2:242591178-242591472(+)$1	1	82	87	14.9999
(..((	chrX:122757334-122757630(-)$1	1	59	64	14.9999
.))))	chr3:123671298-123671654(-)$1	1	55	60	14.9999
)))..	chr12:112525214-112525613(-)$1	1	312	317	14.9999
)))).	chr4:187513768-187514021(-)$1	1	78	83	14.9999
(((..	chr3:169888898-169889231(-)$1	1	235	240	14.9999
....(	chr4:68376610-68376964(-)$1	1	157	162	14.9999
)..))	chr17:65358885-65359192(-)$1	1	85	90	14.9999
.((((	chr6:160174255-160174600(+)$1	1	141	146	14.9999
(((((	chr13:20593657-20593960(+)$1	1	239	244	14.9999
.....	chr20:5996005-5996260(+)$1	1	98	103	14.9999
..)))	chr2:166781029-166781307(-)$1	1	54	59	14.9999
.))))	chr11:14535769-14536078(-)$1	1	141	146	14.9999
)))))	chr12:100955406-100955774(+)$1	1	282	287	14.9999
..)))	chr7:157023912-157024251(+)$1	1	150	155	14.9999
((((.	chr3:171851284-171851547(+)$1	1	112	117	14.9999
.((((	chr4:113189445-113189774(+)$1	1	158	163	14.9999
).)))	chr20:47589559-47589846(+)$1	1	107	112	14.9999
)))..	chr5:130785620-130786023(-)$1	1	173	178	14.9999
((((.	chr11:85689018-85689346(-)$1	1	54	59	14.9999
(((((	chr1:201828017-201828298(+)$1	1	107	112	14.9999
(.(((	chr12:11174412-11174679(-)$1	1	87	92	14.9999
.....	chr14:50298512-50298878(-)$1	1	23	28	14.9999

#PSSM
A : 0.98	a : 0.01	
U : 0.98	u : 0.01	
G : 0.98	g : 0.01	
U : 0.96	u : 0.03	
U : 0.96	u : 0.03	

#score	929.9999999999999
#seq	62
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF821EXR_HNRNPUL1_transcript_m1_run2.nuc.txt

#NT
CAG	chr11:65192489-65192730(+)$1	241	19	22	9.0000
CAG	chr7:127669721-127669991(+)$1	270	34	37	9.0000
CAG	chr16:89032460-89032708(-)$1	248	6	9	9.0000
CAG	chr11:65193628-65193882(+)$1	254	117	120	9.0000
CAG	chr11:93454833-93455042(+)$1	209	58	61	9.0000
CAG	chr11:2012489-2012762(+)$1	273	9	12	9.0000
CAG	chr18:47017932-47018136(-)$1	204	99	102	9.0000
CAG	chr22:49993486-49993741(-)$1	255	38	41	9.0000
CAG	chr7:98479382-98479607(+)$1	225	15	18	9.0000
CAG	chr7:98479364-98479572(+)$1	208	33	36	9.0000
CAG	chr7:98479343-98479556(+)$1	213	54	57	9.0000
CAG	chr22:49961775-49962082(-)$1	307	38	41	9.0000
CAG	chr2:232324973-232325188(-)$1	215	8	11	9.0000
CAG	chr7:91762799-91763068(-)$1	269	13	16	9.0000
CAG	chr19:1412157-1412378(+)$1	221	39	42	9.0000
CAG	chr1:28907188-28907427(-)$1	239	16	19	9.0000
CAG	chr11:1994711-1995008(+)$1	297	15	18	9.0000
CAG	chr11:93454754-93454986(+)$1	232	22	25	9.0000
CAG	chr7:45144295-45144540(-)$1	245	31	34	9.0000
CAG	chr22:50007345-50007589(-)$1	244	31	34	9.0000
CAG	chr1:76255088-76255291(+)$1	203	3	6	9.0000
CAG	chr1:28905163-28905384(-)$1	221	57	60	9.0000
CAG	chr11:65193577-65193814(+)$1	237	168	171	9.0000
CAG	chr11:93454661-93454907(+)$1	246	13	16	9.0000
CAG	chr11:93454842-93455052(+)$1	210	49	52	9.0000
CAG	chr19:2047565-2047814(-)$1	249	3	6	9.0000
CAG	chr11:93454824-93455033(+)$1	209	67	70	9.0000
CAG	chrX:73071005-73071243(-)$1	238	19	22	9.0000
CAG	chr7:98479375-98479582(+)$1	207	22	25	9.0000
CAG	chr2:97533929-97534160(-)$1	231	5	8	9.0000
cag	chr9:33952672-33952942(-)$1	270	26	29	9.0000
CAG	chr17:2232322-2232587(-)$1	265	69	72	9.0000
CAG	chr16:31198279-31198547(+)$1	268	0	3	9.0000
CAG	chr21:45563746-45564039(+)$1	293	6	9	9.0000
CAG	chr6:133136385-133136611(+)$1	226	56	59	9.0000
CAG	chr16:31198641-31198883(+)$1	242	131	134	9.0000
CAG	chr3:187459396-187459664(-)$1	268	85	88	9.0000
CAG	chr7:98479356-98479564(+)$1	208	41	44	9.0000
CAG	chr22:49980951-49981248(-)$1	297	6	9	9.0000
CAG	chr16:70571855-70572100(+)$1	245	5	8	9.0000
CAG	chr22:49969324-49969581(-)$1	257	27	30	9.0000
CAG	chr2:27273628-27273837(+)$1	209	0	3	9.0000
CAG	chr3:160232594-160232796(-)$1	202	29	32	9.0000
CAG	chr7:45144122-45144427(-)$1	305	1	4	9.0000
CAG	chr19:1411653-1411898(+)$1	245	5	8	9.0000
CAG	chr8:56986300-56986503(-)$1	203	39	42	9.0000
cag	chr6:26988114-26988325(+)$1	211	14	17	9.0000
CAG	chr16:31198683-31198931(+)$1	248	89	92	9.0000
CAG	chr22:50035122-50035372(-)$1	250	6	9	9.0000
CAG	chr2:234197459-234197676(+)$1	217	23	26	9.0000
CAG	chr1:28907227-28907486(-)$1	259	50	53	9.0000
CAG	chr19:575529-575774(+)$1	245	37	40	9.0000
CAG	chr10:101996766-101996995(-)$1	229	62	65	9.0000
cag	chr18:47015513-47015726(-)$1	213	187	190	9.0000
CAG	chr7:98479372-98479575(+)$1	203	25	28	9.0000
CAG	chr12:6619568-6619780(+)$1	212	3	6	9.0000
cag	chr16:89023760-89024004(-)$1	244	3	6	9.0000
CAG	chr16:31197545-31197814(+)$1	269	40	43	9.0000
CAG	chr2:27273605-27273815(+)$1	210	20	23	9.0000
CAG	chr18:47340345-47340638(+)$1	293	34	37	9.0000
CAG	chrX:20154070-20154323(-)$1	253	138	141	9.0000
CAG	chrX:20154123-20154425(-)$1	302	4	7	9.0000
CAG	chr17:27050370-27050605(+)$1	235	176	179	9.0000
CAG	chr13:92001549-92001793(+)$1	244	0	3	9.0000
CAG	chr11:93454808-93455010(+)$1	202	83	86	9.0000
CAG	chr16:89360727-89361002(-)$1	275	19	22	9.0000
CAG	chr11:65202558-65202789(+)$1	231	18	21	9.0000
CAG	chr22:50021715-50021956(-)$1	241	43	46	9.0000
cag	chr22:50013893-50014165(-)$1	272	9	12	9.0000
CAG	chr11:65191946-65192191(+)$1	245	136	139	9.0000
CAG	chr16:89033145-89033382(-)$1	237	25	28	9.0000
CAG	chr2:101889400-101889608(-)$1	208	17	20	9.0000
CAG	chrX:135961255-135961484(-)$1	229	20	23	9.0000
CAG	chr22:50011586-50011836(-)$1	250	20	23	9.0000
CAG	chr11:65193773-65194031(+)$1	258	193	196	9.0000
CAG	chr22:49995353-49995628(-)$1	275	22	25	9.0000
CAG	chr5:40832668-40832873(-)$1	205	35	38	9.0000
CAG	chr7:98479317-98479523(+)$1	206	80	83	9.0000
cag	chr22:50013828-50014093(-)$1	265	6	9	9.0000
CAG	chr1:76255091-76255305(+)$1	214	0	3	9.0000
CAG	chr5:34192095-34192338(-)$1	243	11	14	9.0000
CAG	chr22:50021847-50022131(-)$1	284	17	20	9.0000
CAG	chr16:31199378-31199623(+)$1	245	12	15	9.0000
CAG	chr7:98479339-98479543(+)$1	204	58	61	9.0000
cag	chr9:139559440-139559736(+)$1	296	52	55	9.0000
CAG	chr11:93463748-93463980(-)$1	232	13	16	9.0000
CAG	chr11:62622003-62622226(-)$1	223	6	9	9.0000
CAG	chr6:133136412-133136616(+)$1	204	29	32	9.0000
CAG	chr13:114160796-114161086(+)$1	290	6	9	9.0000
CAG	chr3:186502633-186502846(+)$1	213	140	143	9.0000
CAG	chr17:16342932-16343185(+)$1	253	56	59	9.0000
CAG	chr5:34191257-34191526(-)$1	269	9	12	9.0000
CAG	chr1:94313116-94313324(+)$1	208	7	10	9.0000
CAG	chr22:50036366-50036640(-)$1	274	17	20	9.0000

#otherMatches

#Struct PSSM
FFC	chr19:1409991-1410222(+)$1	231	4	7	9.0000
bb[	chr11:65192489-65192730(+)$1	241	19	22	9.0000
e:D	chr7:127669721-127669991(+)$1	270	34	37	9.0000
e""	chr16:89032460-89032708(-)$1	248	6	9	9.0000
bb[	chr11:65193628-65193882(+)$1	254	117	120	9.0000
33b	chr11:93454833-93455042(+)$1	209	58	61	9.0000
KKH	chr11:2012489-2012762(+)$1	273	9	12	9.0000
]bb	chr18:47017932-47018136(-)$1	204	99	102	9.0000
d:c	chr22:49993486-49993741(-)$1	255	38	41	9.0000
qqq	chr7:98479382-98479607(+)$1	225	15	18	9.0000
ddd	chr7:98479364-98479572(+)$1	208	33	36	9.0000
ddd	chr7:98479343-98479556(+)$1	213	54	57	9.0000
eee	chr22:49961775-49962082(-)$1	307	38	41	9.0000
:::	chr2:232324973-232325188(-)$1	215	8	11	9.0000
BBC	chr7:91762799-91763068(-)$1	269	13	16	9.0000
ccc	chr19:1412157-1412378(+)$1	221	39	42	9.0000
GGG	chr1:28907188-28907427(-)$1	239	16	19	9.0000
e''	chr11:1994711-1995008(+)$1	297	15	18	9.0000
MME	chr11:93454754-93454986(+)$1	232	22	25	9.0000
e44	chr7:45144295-45144540(-)$1	245	31	34	9.0000
ddd	chr22:50007345-50007589(-)$1	244	31	34	9.0000
EE{	chr1:76255088-76255291(+)$1	203	3	6	9.0000
eee	chr1:28905163-28905384(-)$1	221	57	60	9.0000
ccc	chr11:65193577-65193814(+)$1	237	168	171	9.0000
ddd	chr11:93454661-93454907(+)$1	246	13	16	9.0000
CCC	chr11:93454842-93455052(+)$1	210	49	52	9.0000
eee	chr19:2047565-2047814(-)$1	249	3	6	9.0000
ccc	chr11:93454824-93455033(+)$1	209	67	70	9.0000
GGG	chrX:73071005-73071243(-)$1	238	19	22	9.0000
ddd	chr7:98479375-98479582(+)$1	207	22	25	9.0000
DDD	chr2:97533929-97534160(-)$1	231	5	8	9.0000
ooo	chr9:33952672-33952942(-)$1	270	26	29	9.0000
:GG	chr17:2232322-2232587(-)$1	265	69	72	9.0000
:::	chr16:31198279-31198547(+)$1	268	0	3	9.0000
::c	chr21:45563746-45564039(+)$1	293	6	9	9.0000
FFF	chr6:133136385-133136611(+)$1	226	56	59	9.0000
ccd	chr16:31198641-31198883(+)$1	242	131	134	9.0000
iii	chr3:187459396-187459664(-)$1	268	85	88	9.0000
ccc	chr7:98479356-98479564(+)$1	208	41	44	9.0000
JJJ	chr22:49980951-49981248(-)$1	297	6	9	9.0000
:EE	chr16:70571855-70572100(+)$1	245	5	8	9.0000
dd!	chr22:49969324-49969581(-)$1	257	27	30	9.0000
:::	chr2:27273628-27273837(+)$1	209	0	3	9.0000
ccc	chr3:160232594-160232796(-)$1	202	29	32	9.0000
fff	chr7:45144122-45144427(-)$1	305	1	4	9.0000
ggg	chr19:1411653-1411898(+)$1	245	5	8	9.0000
ddd	chr8:56986300-56986503(-)$1	203	39	42	9.0000
DDD	chr6:26988114-26988325(+)$1	211	14	17	9.0000
ccd	chr16:31198683-31198931(+)$1	248	89	92	9.0000
A:f	chr22:50035122-50035372(-)$1	250	6	9	9.0000
ddd	chr2:234197459-234197676(+)$1	217	23	26	9.0000
ddd	chr1:28907227-28907486(-)$1	259	50	53	9.0000
g22	chr19:575529-575774(+)$1	245	37	40	9.0000
ccc	chr10:101996766-101996995(-)$1	229	62	65	9.0000
fff	chr18:47015513-47015726(-)$1	213	187	190	9.0000
ddd	chr7:98479372-98479575(+)$1	203	25	28	9.0000
===	chr12:6619568-6619780(+)$1	212	3	6	9.0000
DDD	chr16:89023760-89024004(-)$1	244	3	6	9.0000
FFF	chr16:31197545-31197814(+)$1	269	40	43	9.0000
LCC	chr2:27273605-27273815(+)$1	210	20	23	9.0000
C{F	chr18:47340345-47340638(+)$1	293	34	37	9.0000
[dd	chrX:20154070-20154323(-)$1	253	138	141	9.0000
:::	chrX:20154123-20154425(-)$1	302	4	7	9.0000
!bb	chr17:27050370-27050605(+)$1	235	176	179	9.0000
JJJ	chr13:92001549-92001793(+)$1	244	0	3	9.0000
CCC	chr11:93454808-93455010(+)$1	202	83	86	9.0000
{BB	chr16:89360727-89361002(-)$1	275	19	22	9.0000
)))	chr11:65202558-65202789(+)$1	231	18	21	9.0000
dd[	chr22:50021715-50021956(-)$1	241	43	46	9.0000
d++	chr22:50013893-50014165(-)$1	272	9	12	9.0000
ggg	chr11:65191946-65192191(+)$1	245	136	139	9.0000
JJJ	chr16:89033145-89033382(-)$1	237	25	28	9.0000
DDD	chr2:101889400-101889608(-)$1	208	17	20	9.0000
eee	chrX:135961255-135961484(-)$1	229	20	23	9.0000
CCC	chr22:50011586-50011836(-)$1	250	20	23	9.0000
ddb	chr11:65193773-65194031(+)$1	258	193	196	9.0000
b]e	chr22:49995353-49995628(-)$1	275	22	25	9.0000
hhh	chr5:40832668-40832873(-)$1	205	35	38	9.0000
ccc	chr7:98479317-98479523(+)$1	206	80	83	9.0000
G::	chr22:50013828-50014093(-)$1	265	6	9	9.0000
GGG	chr1:76255091-76255305(+)$1	214	0	3	9.0000
iii	chr5:34192095-34192338(-)$1	243	11	14	9.0000
HHg	chr22:50021847-50022131(-)$1	284	17	20	9.0000
iii	chr16:31199378-31199623(+)$1	245	12	15	9.0000
ccc	chr7:98479339-98479543(+)$1	204	58	61	9.0000
ddd	chr9:139559440-139559736(+)$1	296	52	55	9.0000
ooe	chr11:93463748-93463980(-)$1	232	13	16	9.0000
DDD	chr11:62622003-62622226(-)$1	223	6	9	9.0000
FFF	chr6:133136412-133136616(+)$1	204	29	32	9.0000
Gcc	chr13:114160796-114161086(+)$1	290	6	9	9.0000
fff	chr3:186502633-186502846(+)$1	213	140	143	9.0000
c22	chr17:16342932-16343185(+)$1	253	56	59	9.0000
hhh	chr5:34191257-34191526(-)$1	269	9	12	9.0000
CLL	chr1:94313116-94313324(+)$1	208	7	10	9.0000
!!d	chr22:50036366-50036640(-)$1	274	17	20	9.0000

#DB
(((	chr19:1409991-1410222(+)$1	1	4	7	9.0000
((.	chr11:65192489-65192730(+)$1	1	19	22	9.0000
).(	chr7:127669721-127669991(+)$1	1	34	37	9.0000
(..	chr16:89032460-89032708(-)$1	1	6	9	9.0000
((.	chr11:65193628-65193882(+)$1	1	117	120	9.0000
..)	chr11:93454833-93455042(+)$1	1	58	61	9.0000
..(	chr11:2012489-2012762(+)$1	1	9	12	9.0000
.))	chr18:47017932-47018136(-)$1	1	99	102	9.0000
).(	chr22:49993486-49993741(-)$1	1	38	41	9.0000
...	chr7:98479382-98479607(+)$1	1	15	18	9.0000
(((	chr7:98479364-98479572(+)$1	1	33	36	9.0000
(((	chr7:98479343-98479556(+)$1	1	54	57	9.0000
)))	chr22:49961775-49962082(-)$1	1	38	41	9.0000
...	chr2:232324973-232325188(-)$1	1	8	11	9.0000
(((	chr7:91762799-91763068(-)$1	1	13	16	9.0000
(((	chr19:1412157-1412378(+)$1	1	39	42	9.0000
(((	chr1:28907188-28907427(-)$1	1	16	19	9.0000
(..	chr11:1994711-1995008(+)$1	1	15	18	9.0000
..(	chr11:93454754-93454986(+)$1	1	22	25	9.0000
)..	chr7:45144295-45144540(-)$1	1	31	34	9.0000
(((	chr22:50007345-50007589(-)$1	1	31	34	9.0000
((.	chr1:76255088-76255291(+)$1	1	3	6	9.0000
(((	chr1:28905163-28905384(-)$1	1	57	60	9.0000
)))	chr11:65193577-65193814(+)$1	1	168	171	9.0000
(((	chr11:93454661-93454907(+)$1	1	13	16	9.0000
(((	chr11:93454842-93455052(+)$1	1	49	52	9.0000
(((	chr19:2047565-2047814(-)$1	1	3	6	9.0000
))(	chr11:93454824-93455033(+)$1	1	67	70	9.0000
(((	chrX:73071005-73071243(-)$1	1	19	22	9.0000
(((	chr7:98479375-98479582(+)$1	1	22	25	9.0000
(((	chr2:97533929-97534160(-)$1	1	5	8	9.0000
...	chr9:33952672-33952942(-)$1	1	26	29	9.0000
.((	chr17:2232322-2232587(-)$1	1	69	72	9.0000
...	chr16:31198279-31198547(+)$1	1	0	3	9.0000
..(	chr21:45563746-45564039(+)$1	1	6	9	9.0000
(((	chr6:133136385-133136611(+)$1	1	56	59	9.0000
)))	chr16:31198641-31198883(+)$1	1	131	134	9.0000
)))	chr3:187459396-187459664(-)$1	1	85	88	9.0000
)))	chr7:98479356-98479564(+)$1	1	41	44	9.0000
(((	chr22:49980951-49981248(-)$1	1	6	9	9.0000
.((	chr16:70571855-70572100(+)$1	1	5	8	9.0000
((.	chr22:49969324-49969581(-)$1	1	27	30	9.0000
...	chr2:27273628-27273837(+)$1	1	0	3	9.0000
(((	chr3:160232594-160232796(-)$1	1	29	32	9.0000
(((	chr7:45144122-45144427(-)$1	1	1	4	9.0000
(((	chr19:1411653-1411898(+)$1	1	5	8	9.0000
(((	chr8:56986300-56986503(-)$1	1	39	42	9.0000
(((	chr6:26988114-26988325(+)$1	1	14	17	9.0000
)))	chr16:31198683-31198931(+)$1	1	89	92	9.0000
(.(	chr22:50035122-50035372(-)$1	1	6	9	9.0000
)))	chr2:234197459-234197676(+)$1	1	23	26	9.0000
(((	chr1:28907227-28907486(-)$1	1	50	53	9.0000
)..	chr19:575529-575774(+)$1	1	37	40	9.0000
)))	chr10:101996766-101996995(-)$1	1	62	65	9.0000
(((	chr18:47015513-47015726(-)$1	1	187	190	9.0000
(((	chr7:98479372-98479575(+)$1	1	25	28	9.0000
(((	chr12:6619568-6619780(+)$1	1	3	6	9.0000
(((	chr16:89023760-89024004(-)$1	1	3	6	9.0000
(((	chr16:31197545-31197814(+)$1	1	40	43	9.0000
.((	chr2:27273605-27273815(+)$1	1	20	23	9.0000
(.(	chr18:47340345-47340638(+)$1	1	34	37	9.0000
.((	chrX:20154070-20154323(-)$1	1	138	141	9.0000
...	chrX:20154123-20154425(-)$1	1	4	7	9.0000
.((	chr17:27050370-27050605(+)$1	1	176	179	9.0000
(((	chr13:92001549-92001793(+)$1	1	0	3	9.0000
(((	chr11:93454808-93455010(+)$1	1	83	86	9.0000
.((	chr16:89360727-89361002(-)$1	1	19	22	9.0000
...	chr11:65202558-65202789(+)$1	1	18	21	9.0000
((.	chr22:50021715-50021956(-)$1	1	43	46	9.0000
(..	chr22:50013893-50014165(-)$1	1	9	12	9.0000
(((	chr11:65191946-65192191(+)$1	1	136	139	9.0000
(((	chr16:89033145-89033382(-)$1	1	25	28	9.0000
(((	chr2:101889400-101889608(-)$1	1	17	20	9.0000
(((	chrX:135961255-135961484(-)$1	1	20	23	9.0000
(((	chr22:50011586-50011836(-)$1	1	20	23	9.0000
)))	chr11:65193773-65194031(+)$1	1	193	196	9.0000
).)	chr22:49995353-49995628(-)$1	1	22	25	9.0000
(((	chr5:40832668-40832873(-)$1	1	35	38	9.0000
)))	chr7:98479317-98479523(+)$1	1	80	83	9.0000
(..	chr22:50013828-50014093(-)$1	1	6	9	9.0000
(((	chr1:76255091-76255305(+)$1	1	0	3	9.0000
(((	chr5:34192095-34192338(-)$1	1	11	14	9.0000
(((	chr22:50021847-50022131(-)$1	1	17	20	9.0000
(((	chr16:31199378-31199623(+)$1	1	12	15	9.0000
)))	chr7:98479339-98479543(+)$1	1	58	61	9.0000
)))	chr9:139559440-139559736(+)$1	1	52	55	9.0000
..)	chr11:93463748-93463980(-)$1	1	13	16	9.0000
(((	chr11:62622003-62622226(-)$1	1	6	9	9.0000
(((	chr6:133136412-133136616(+)$1	1	29	32	9.0000
(((	chr13:114160796-114161086(+)$1	1	6	9	9.0000
)))	chr3:186502633-186502846(+)$1	1	140	143	9.0000
)..	chr17:16342932-16343185(+)$1	1	56	59	9.0000
(((	chr5:34191257-34191526(-)$1	1	9	12	9.0000
(..	chr1:94313116-94313324(+)$1	1	7	10	9.0000
..(	chr22:50036366-50036640(-)$1	1	17	20	9.0000

#PSSM
C : 0.92	c : 0.07	
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	

#score	855.0000000000002
#seq	95
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_CDS_m3_run2.nuc.txt

#NT
CGGGGGGCCGCCGGG	chr2:204193081-204193340(+)$1	259	193	208	15.8490
cggggaggcggcagg	chr12:65004212-65004522(+)$1	310	30	45	17.0754
ggagggggcguggcg	chr17:882714-883089(-)$1	375	32	47	18.1132
CGCCGGGGCAGGGAG	chr11:92930881-92931207(-)$1	326	78	93	14.4339
GGAGCGGGCAGGGGC	chr17:45000410-45000661(+)$1	251	192	207	15.0943
CGAGGAGGAGGGGCG	chr20:5930897-5931258(-)$1	361	158	173	17.9245
GGGCGGGGCGGAGGG	chr11:65479638-65479943(+)$1	305	128	143	17.0754
CUGGGGGGAGGGGGG	chrX:48900626-48900957(-)$1	331	119	134	18.3018
CGGGGGUGCUGGUGG	chr14:23398385-23398673(-)$1	288	120	135	14.4339
CGAGGCGGCGGCGAC	chr2:85838936-85839202(-)$1	266	61	76	16.5094
GGCGCGGGCUGGGGG	chr13:113344622-113344886(+)$1	264	159	174	15.5660
UGAGGCGGCGGCGGC	chr22:31608236-31608511(+)$1	275	60	75	16.6981
CGAGGAGGCGGCGCC	chr6:42952199-42952539(+)$1	340	28	43	16.6981
CGAGAGGGCGGGAGA	chr2:11606017-11606373(-)$1	356	311	326	16.1320
CGUGGGGCCGGGGCG	chr16:69166417-69166697(+)$1	280	120	135	18.0188
GGAUGGGGAGGGGCG	chr15:64443828-64444143(+)$1	315	236	251	14.9056
CGGGGGAGGGGGUGG	chr19:10426428-10426773(-)$1	345	198	213	14.8113
CGGGGGGGCGGGGUC	chr2:109403132-109403479(+)$1	347	44	59	20.2830
GGAGCGGGCGGGGGC	chr9:72374660-72374965(-)$1	305	234	249	19.0566
CGCGGGCCCGGGUGG	chr16:14723863-14724160(-)$1	297	137	152	13.6792
UGAGGCGGCUGGGGC	chr16:56553656-56554034(-)$1	378	144	159	14.9999
CGAGGCGGCGGCGAC	chr2:85839002-85839262(-)$1	260	121	136	16.5094
GGAGGAGGCAGUGGG	chr20:43029879-43030198(+)$1	319	45	60	15.4716
CCAggguggggggga	chr19:11616415-11616709(-)$1	294	94	109	13.0188
GGAGGAGGAGGGGAG	chr3:182698135-182698426(-)$1	291	115	130	15.8490
CGAAGAGGGGGCGGG	chr10:75910889-75911195(+)$1	306	74	89	14.7169
CGGCGGGGCGGGUGU	chr10:128593939-128594216(+)$1	277	240	255	15.5660
GGAGGUGGGGGUGGG	chr21:30396889-30397189(+)$1	300	21	36	15.2830
CGAGGCGGCGCGGGU	chr1:146714244-146714498(+)$1	254	186	201	17.6415
CCGGGGGGCGGGGUC	chr14:59951136-59951460(+)$1	324	2	17	16.6981
CCAGGGGCCGAGGGG	chr8:145743045-145743305(-)$1	260	232	247	15.2830
CGUGGGGGCGGCAGC	chr18:51795828-51796147(+)$1	319	177	192	16.2264
ugagcgggcgggcgg	chr2:166810089-166810386(-)$1	297	217	232	16.6981
CAAGAGGGCGGGGCG	chrX:153362964-153363251(-)$1	287	27	42	16.1320
GGUGGCGGCGGGGGG	chr9:88897276-88897554(-)$1	278	42	57	20.2830
cgggcgggcgcaggg	chr9:97767170-97767448(+)$1	278	116	131	15.3773
GUACGGGGCGGGGGA	chr2:48667968-48668247(+)$1	279	105	120	14.3396
GGAGGAGGUGGUGGG	chr21:47575281-47575577(-)$1	296	264	279	15.6603
CGAGGGGGCGGGGGG	chr11:58346573-58346885(+)$1	312	97	112	26.9811
CCGUGGGGCGGGGUG	chr2:214149072-214149355(+)$1	283	9	24	15.3773
CGUGGGCGCGGCGGU	chr16:2570305-2570561(+)$1	256	7	22	15.5660
CGGUGGGGGGCGGGG	chr1:27320108-27320425(+)$1	317	153	168	14.9056
CGCAGGCGCGGGGUG	chr16:67693900-67694291(-)$1	391	28	43	14.3396
GGAGUGGGCGGUGGG	chr2:242447765-242448089(-)$1	324	9	24	18.0188
UGAGGGGACGCGGGG	chr3:9691111-9691431(+)$1	320	134	149	16.1320
CGGGGAGCCGGCGGG	chr22:21212859-21213190(-)$1	331	140	155	16.8867
CCCGGGAGCGGGUGG	chr3:39448112-39448476(+)$1	364	330	345	13.9622
AGCGGCUGCGGGGGG	chr6:43596717-43596982(-)$1	265	182	197	15.5660
cgggggggcacgggg	chr17:56065347-56065628(-)$1	281	205	220	18.2075
CCCAGGGGUGGGGGG	chr12:104324220-104324443(+)$1	223	6	21	13.9622
CGAGGGGGCGGGGCU	chr15:74908079-74908388(+)$1	309	60	75	21.1320
GGAGCGGGCGGGCAG	chr12:56862263-56862567(+)$1	304	47	62	14.6226

#otherMatches

#Struct PSSM
IIIIIII{A{BBeee	chr10:5932099-5932433(+)$1	334	49	64	17.0754
eee[allla]eeeee	chr2:204193081-204193340(+)$1	259	193	208	15.8490
HHH::GGGGGGG{GG	chr12:65004212-65004522(+)$1	310	30	45	17.0754
C{IIIIIIIIIeeee	chr17:882714-883089(-)$1	375	32	47	18.1132
2ccc22ccc55555i	chr11:92930881-92931207(-)$1	326	78	93	14.4339
}A}CCC}BB~~~~EE	chr17:45000410-45000661(+)$1	251	192	207	15.0943
bqqqqqqqqbb::cc	chr20:5930897-5931258(-)$1	361	158	173	17.9245
ccc[ggggggg[a[b	chr11:65479638-65479943(+)$1	305	128	143	17.0754
hhhhhhhh]cccbb!	chrX:48900626-48900957(-)$1	331	119	134	18.3018
c::::::cccooooo	chr14:23398385-23398673(-)$1	288	120	135	14.4339
Ebb[dddd[ammmma	chr2:85838936-85839202(-)$1	266	61	76	16.5094
]dddd]dddd]bb]a	chr13:113344622-113344886(+)$1	264	159	174	15.5660
d]eeeee22eeeee:	chr22:31608236-31608511(+)$1	275	60	75	16.6981
GGGGG{EEEEE:eee	chr6:42952199-42952539(+)$1	340	28	43	16.6981
d####ddddoooooo	chr2:11606017-11606373(-)$1	356	311	326	16.1320
]ccc4444ccceeee	chr16:69166417-69166697(+)$1	280	120	135	18.0188
]ggggggg]adddd]	chr15:64443828-64444143(+)$1	315	236	251	14.9056
iCCC}GGGGGGG}CC	chr19:10426428-10426773(-)$1	345	198	213	14.8113
3ccc==========:	chr2:109403132-109403479(+)$1	347	44	59	20.2830
DIIIIIIIIIccc[g	chr9:72374660-72374965(-)$1	305	234	249	19.0566
dmmmmddddbb[fff	chr16:14723863-14724160(-)$1	297	137	152	13.6792
ooooooffffffa[c	chr16:56553656-56554034(-)$1	378	144	159	14.9999
B{DDDD{FFFFFF::	chr2:85839002-85839262(-)$1	260	121	136	16.5094
iiiiii::::DDDDK	chr20:43029879-43030198(+)$1	319	45	60	15.4716
eeeee]ffffff333	chr19:11616415-11616709(-)$1	294	94	109	13.0188
FFFFFccc!!ccc[a	chr3:182698135-182698426(-)$1	291	115	130	15.8490
c:::::::::bb[a!	chr10:75910889-75911195(+)$1	306	74	89	14.7169
dJJJJJJJJJJJJJ}	chr10:128593939-128594216(+)$1	277	240	255	15.5660
fff[dddd!!fffff	chr21:30396889-30397189(+)$1	300	21	36	15.2830
pppccc:GGGGGGG}	chr1:146714244-146714498(+)$1	254	186	201	17.6415
EEE::JJJJJJJJJJ	chr14:59951136-59951460(+)$1	324	2	17	16.6981
}A}AFFFFFF}EEEE	chr8:145743045-145743305(-)$1	260	232	247	15.2830
cccmmmmccc333ee	chr18:51795828-51796147(+)$1	319	177	192	16.2264
A}FFFFFF}GGGGGG	chr2:166810089-166810386(-)$1	297	217	232	16.6981
FKKA{DDDDLLLDDD	chrX:153362964-153363251(-)$1	287	27	42	16.1320
cffffffbb]=====	chr9:88897276-88897554(-)$1	278	42	57	20.2830
ffffffeeeee]ddd	chr9:97767170-97767448(+)$1	278	116	131	15.3773
hh:JJJJJJJJJJJJ	chr2:48667968-48668247(+)$1	279	105	120	14.3396
CCCEEEEE}BB}DDD	chr21:47575281-47575577(-)$1	296	264	279	15.6603
c"""bb[bb[aoooo	chr11:58346573-58346885(+)$1	312	97	112	26.9811
ee[ddddbb"""fff	chr2:214149072-214149355(+)$1	283	9	24	15.3773
GGGGffffff[bboo	chr16:2570305-2570561(+)$1	256	7	22	15.5660
cCCC{DDDDKKEEEE	chr1:27320108-27320425(+)$1	317	153	168	14.9056
emmmmeeeeefffff	chr16:67693900-67694291(-)$1	391	28	43	14.3396
e$$$$$ccc!!gggg	chr2:242447765-242448089(-)$1	324	9	24	18.0188
c333eeeee]bb333	chr3:9691111-9691431(+)$1	320	134	149	16.1320
EEEEKKDDDD:dddd	chr22:21212859-21213190(-)$1	331	140	155	16.8867
oa]ffffffFFFFFF	chr3:39448112-39448476(+)$1	364	330	345	13.9622
mmmmeeeeeFFFFFF	chr6:43596717-43596982(-)$1	265	182	197	15.5660
hhqqqqqqqqhhhhh	chr17:56065347-56065628(-)$1	281	205	220	18.2075
CCC{EEEEE::::II	chr12:104324220-104324443(+)$1	223	6	21	13.9622
c::FFFFFFYYFFFF	chr15:74908079-74908388(+)$1	309	60	75	21.1320
dd]dddd]bb]dddd	chr12:56862263-56862567(+)$1	304	47	62	14.6226

#DB
(((((((.(.(((((	chr10:5932099-5932433(+)$1	1	49	64	17.0754
(((.(...).)))))	chr2:204193081-204193340(+)$1	1	193	208	15.8490
(((..(((((((.((	chr12:65004212-65004522(+)$1	1	30	45	17.0754
(.(((((((((((((	chr17:882714-883089(-)$1	1	32	47	18.1132
.)))..))).....)	chr11:92930881-92931207(-)$1	1	78	93	14.4339
.).))).))....))	chr17:45000410-45000661(+)$1	1	192	207	15.0943
(........))..((	chr20:5930897-5931258(-)$1	1	158	173	17.9245
(((.(((((((.(.(	chr11:65479638-65479943(+)$1	1	128	143	17.0754
)))))))).)))((.	chrX:48900626-48900957(-)$1	1	119	134	18.3018
)......(((.....	chr14:23398385-23398673(-)$1	1	120	135	14.4339
(((.((((.(....)	chr2:85838936-85839202(-)$1	1	61	76	16.5094
.)))).)))).)).)	chr13:113344622-113344886(+)$1	1	159	174	15.5660
).)))))..))))).	chr22:31608236-31608511(+)$1	1	60	75	16.6981
(((((.(((((.(((	chr6:42952199-42952539(+)$1	1	28	43	16.6981
(....((((......	chr2:11606017-11606373(-)$1	1	311	326	16.1320
.)))....)))))))	chr16:69166417-69166697(+)$1	1	120	135	18.0188
.))))))).))))).	chr15:64443828-64444143(+)$1	1	236	251	14.9056
)))).))))))).))	chr19:10426428-10426773(-)$1	1	198	213	14.8113
.))))))))))))).	chr2:109403132-109403479(+)$1	1	44	59	20.2830
))))))))))(((.(	chr9:72374660-72374965(-)$1	1	234	249	19.0566
(....))))((.(((	chr16:14723863-14724160(-)$1	1	137	152	13.6792
......))))))(.(	chr16:56553656-56554034(-)$1	1	144	159	14.9999
(.((((.((((((..	chr2:85839002-85839262(-)$1	1	121	136	16.5094
))))))....((((.	chr20:43029879-43030198(+)$1	1	45	60	15.4716
))))).))))))...	chr19:11616415-11616709(-)$1	1	94	109	13.0188
((((((((..(((.(	chr3:182698135-182698426(-)$1	1	115	130	15.8490
).........((.(.	chr10:75910889-75911195(+)$1	1	74	89	14.7169
)))))))))))))).	chr10:128593939-128594216(+)$1	1	240	255	15.5660
(((.((((..(((((	chr21:30396889-30397189(+)$1	1	21	36	15.2830
...))).))))))).	chr1:146714244-146714498(+)$1	1	186	201	17.6415
(((..((((((((((	chr14:59951136-59951460(+)$1	1	2	17	16.6981
.).))))))).))))	chr8:145743045-145743305(-)$1	1	232	247	15.2830
(((....)))...))	chr18:51795828-51796147(+)$1	1	177	192	16.2264
).)))))).))))))	chr2:166810089-166810386(-)$1	1	217	232	16.6981
(..(.((((...(((	chrX:153362964-153363251(-)$1	1	27	42	16.1320
))))))))).)))))	chr9:88897276-88897554(-)$1	1	42	57	20.2830
))))))))))).)))	chr9:97767170-97767448(+)$1	1	116	131	15.3773
)).((((((((((((	chr2:48667968-48668247(+)$1	1	105	120	14.3396
)))))))).)).)))	chr21:47575281-47575577(-)$1	1	264	279	15.6603
(...((.((.(....	chr11:58346573-58346885(+)$1	1	97	112	26.9811
((.((((((...(((	chr2:214149072-214149355(+)$1	1	9	24	15.3773
((((((((((.((..	chr16:2570305-2570561(+)$1	1	7	22	15.5660
)(((.((((..((((	chr1:27320108-27320425(+)$1	1	153	168	14.9056
(....))))))))))	chr16:67693900-67694291(-)$1	1	28	43	14.3396
(.....(((..((((	chr2:242447765-242448089(-)$1	1	9	24	18.0188
)...))))).))...	chr3:9691111-9691431(+)$1	1	134	149	16.1320
((((..((((.((((	chr22:21212859-21213190(-)$1	1	140	155	16.8867
.).))))))))))))	chr3:39448112-39448476(+)$1	1	330	345	13.9622
....)))))((((((	chr6:43596717-43596982(-)$1	1	182	197	15.5660
((........)))))	chr17:56065347-56065628(-)$1	1	205	220	18.2075
(((.(((((....((	chr12:104324220-104324443(+)$1	1	6	21	13.9622
)..))))))..))))	chr15:74908079-74908388(+)$1	1	60	75	21.1320
)).)))).)).))))	chr12:56862263-56862567(+)$1	1	47	62	14.6226

#PSSM
C : 0.58	G : 0.24	c : 0.05	U : 0.05	g : 0.01	u : 0.01	A : 0.01	
G : 0.73	C : 0.11	g : 0.09	U : 0.03	A : 0.01	
A : 0.47	G : 0.22	C : 0.13	U : 0.07	g : 0.05	a : 0.03	
G : 0.69	g : 0.11	C : 0.07	U : 0.05	A : 0.05	
G : 0.75	g : 0.07	C : 0.07	A : 0.03	c : 0.03	U : 0.01	
G : 0.58	C : 0.15	A : 0.13	g : 0.09	a : 0.01	U : 0.01	
G : 0.73	g : 0.09	U : 0.05	C : 0.05	A : 0.03	u : 0.01	
G : 0.77	g : 0.11	C : 0.09	A : 0.01	
C : 0.69	c : 0.09	A : 0.07	G : 0.07	U : 0.03	g : 0.01	
G : 0.77	g : 0.09	A : 0.05	U : 0.05	a : 0.01	
G : 0.79	C : 0.07	g : 0.05	c : 0.03	u : 0.01	A : 0.01	
G : 0.60	C : 0.18	g : 0.07	U : 0.07	c : 0.01	A : 0.01	a : 0.01	
G : 0.73	U : 0.09	g : 0.07	A : 0.03	a : 0.01	c : 0.01	C : 0.01	
G : 0.60	C : 0.11	g : 0.09	A : 0.09	U : 0.07	c : 0.01	
G : 0.58	C : 0.18	g : 0.09	U : 0.07	A : 0.03	a : 0.01	

#score	869.150943396226
#seq	53
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_transcript_m3_run1.nuc.txt

#NT
UUUGAAAAU	chr5:137772357-137772632(+)$1	275	130	139	15.3333
UUUGUAUAA	chr15:76192936-76193250(+)$1	314	186	195	14.4509
UUUGAACAU	chr2:61705447-61705669(-)$1	222	8	17	15.2352
UCUGAAUAU	chr4:17802422-17802747(-)$1	325	301	310	15.1372
GUUGAAUAU	chr8:107764157-107764447(+)$1	290	49	58	15.0392
UUUGUAUUU	chr2:234745951-234746205(-)$1	254	27	36	16.9019
GUUGUAUAU	chr2:47387259-47387498(-)$1	239	153	162	14.4509
UUUGAAUUU	chr8:23429817-23430065(+)$1	248	22	31	17.4901
UCUGUAUAU	chr7:914061-914311(+)$1	250	112	121	14.5490
UUUUUAUAU	chrX:70685459-70685747(+)$1	288	30	39	16.0196
UUUCUAUAU	chr3:6552182-6552460(+)$1	278	74	83	15.6274
uuuaaauau	chr6:33383845-33384160(+)$1	315	264	273	16.3137
UUUGAAUUU	chr10:98718483-98718753(+)$1	270	144	153	17.4901
UUUGGAAAU	chr4:39825884-39826169(-)$1	285	50	59	12.7843
UUUGUAUAU	chr15:50852454-50852712(-)$1	258	170	179	18.9607
UUGGAAUAU	chr5:314863-315169(+)$1	306	183	192	14.7450
UUUGUAUAU	chr19:1009570-1009799(-)$1	229	115	124	18.9607
UUUGACUAU	chrM:9749-9976(+)$1	227	200	209	14.8431
UUUUAAUAU	chr13:28868896-28869162(+)$1	266	222	231	16.6078
UUUGAAUGU	chr22:22114649-22114911(-)$1	262	212	221	17.0980
UUUGUAUUU	chr12:133160420-133160900(+)$1	480	199	208	16.9019
uuugaauau	chr7:914350-914582(+)$1	232	24	33	19.5490
UUUGUAUAU	chr10:93788833-93789087(+)$1	254	207	216	18.9607
UUUGAAUGU	chr10:22032234-22032494(+)$1	260	232	241	17.0980
AUUGUAUAU	chrX:70459447-70459705(-)$1	258	93	102	14.3529
UUUUAAUCU	chr3:152558511-152558772(+)$1	261	75	84	13.9607
UUUGuauuu	chr1:153902130-153902373(-)$1	243	78	87	16.9019
UUUAAAUUU	chr1:244572241-244572469(-)$1	228	90	99	14.2549
UUUAUAUAU	chr12:98995279-98995564(+)$1	285	94	103	15.7254
UGUGAAUAU	chr10:17756956-17757260(+)$1	304	203	212	15.1372
UUUGAAUGU	chr6:160176720-160177029(+)$1	309	146	155	17.0980
UUUCAAUUU	chr9:74969315-74969609(-)$1	294	92	101	14.1568
UUUGUAUAU	chr12:22843070-22843334(+)$1	264	30	39	18.9607
UUUUUAUAU	chr12:56989776-56990024(-)$1	248	77	86	16.0196
UUUGAAUAC	chr1:155882862-155883128(-)$1	266	188	197	14.9411
UUUGAACAU	chr14:70238326-70238557(+)$1	231	165	174	15.2352
UUUGUAUUU	chr8:128753397-128753658(+)$1	261	16	25	16.9019
UUUGUAAAU	chr15:63900732-63900977(-)$1	245	1	10	14.7450
UGUGUAUAU	chr10:1086001-1086281(-)$1	280	164	173	14.5490
UUUGAUUAU	chr5:145890580-145890898(+)$1	318	169	178	14.8431
UUUAAAUGU	chrX:16862077-16862374(+)$1	297	76	85	13.8627
UUUGCAUGU	chr1:168044773-168045044(+)$1	271	252	261	14.6470
uuuuaauau	chr17:74266735-74267012(+)$1	277	66	75	16.6078
UUUGUAUAU	chr7:135333243-135333573(+)$1	330	172	181	18.9607
UUUGUAUCU	chr12:116397225-116397482(-)$1	257	54	63	16.3137
UUUGUAUCU	chr22:22114781-22115010(-)$1	229	40	49	16.3137
UUUGAAUAA	chr1:172580426-172580702(+)$1	276	73	82	15.0392
UUUUAAUGU	chr14:103196648-103196910(+)$1	262	46	55	14.1568
UUUCAAUCU	chr17:48829835-48830088(+)$1	253	26	35	13.5686
UUUGCAUUU	chr7:913015-913293(+)$1	278	225	234	15.0392

#otherMatches

#Struct PSSM
^^^^^^^^^	chrX:70520812-70521074(+)$1	262	200	209	14.5490
JJJJJJJJ:	chr5:137772357-137772632(+)$1	275	130	139	15.3333
dddd$$$$$	chr15:76192936-76193250(+)$1	314	186	195	14.4509
:::::::::	chr2:61705447-61705669(-)$1	222	8	17	15.2352
ddddfffff	chr4:17802422-17802747(-)$1	325	301	310	15.1372
eee::::::	chr8:107764157-107764447(+)$1	290	49	58	15.0392
^^^^^^^^^	chr2:234745951-234746205(-)$1	254	27	36	16.9019
hhhhhh[dd	chr2:47387259-47387498(-)$1	239	153	162	14.4509
^^^^^^^^^	chr8:23429817-23430065(+)$1	248	22	31	17.4901
4dddd5555	chr7:914061-914311(+)$1	250	112	121	14.5490
JJJJJKKCC	chrX:70685459-70685747(+)$1	288	30	39	16.0196
duuuuuuuu	chr3:6552182-6552460(+)$1	278	74	83	15.6274
ggggggnnn	chr6:33383845-33384160(+)$1	315	264	273	16.3137
gggggffff	chr10:98718483-98718753(+)$1	270	144	153	17.4901
:eeeee"""	chr4:39825884-39826169(-)$1	285	50	59	12.7843
ddd]a333b	chr15:50852454-50852712(-)$1	258	170	179	18.9607
eeeee[ccc	chr5:314863-315169(+)$1	306	183	192	14.7450
iiiiiiiii	chr19:1009570-1009799(-)$1	229	115	124	18.9607
CC}BB@@@@	chrM:9749-9976(+)$1	227	200	209	14.8431
====:ffff	chr13:28868896-28869162(+)$1	266	222	231	16.6078
]ffffff44	chr22:22114649-22114911(-)$1	262	212	221	17.0980
eee333===	chr12:133160420-133160900(+)$1	480	199	208	16.9019
======$$$	chr7:914350-914582(+)$1	232	24	33	19.5490
::DDDD}FF	chr10:93788833-93789087(+)$1	254	207	216	18.9607
=========	chr10:22032234-22032494(+)$1	260	232	241	17.0980
>>>>>>>>>	chrX:70459447-70459705(-)$1	258	93	102	14.3529
^^^^^^^^d	chr3:152558511-152558772(+)$1	261	75	84	13.9607
22ccc::::	chr1:153902130-153902373(-)$1	243	78	87	16.9019
+++++++++	chr1:244572241-244572469(-)$1	228	90	99	14.2549
fff55555g	chr12:98995279-98995564(+)$1	285	94	103	15.7254
:ffffff!!	chr10:17756956-17757260(+)$1	304	203	212	15.1372
c22ffffff	chr6:160176720-160177029(+)$1	309	146	155	17.0980
fff999999	chr9:74969315-74969609(-)$1	294	92	101	14.1568
g]bb:::::	chr12:22843070-22843334(+)$1	264	30	39	18.9607
:::::::::	chr12:56989776-56990024(-)$1	248	77	86	16.0196
]bb]ddddc	chr1:155882862-155883128(-)$1	266	188	197	14.9411
ii:ddddoo	chr14:70238326-70238557(+)$1	231	165	174	15.2352
::IIIIIII	chr8:128753397-128753658(+)$1	261	16	25	16.9019
:::::::::	chr15:63900732-63900977(-)$1	245	1	10	14.7450
"bb[dddd!	chr10:1086001-1086281(-)$1	280	164	173	14.5490
hhhhh::::	chr5:145890580-145890898(+)$1	318	169	178	14.8431
ggggg[bbp	chrX:16862077-16862374(+)$1	297	76	85	13.8627
ffff:::::	chr1:168044773-168045044(+)$1	271	252	261	14.6470
gg"""gggg	chr17:74266735-74267012(+)$1	277	66	75	16.6078
:::bb[fff	chr7:135333243-135333573(+)$1	330	172	181	18.9607
ddppppppp	chr12:116397225-116397482(-)$1	257	54	63	16.3137
dddd4444=	chr22:22114781-22115010(-)$1	229	40	49	16.3137
g####ccc#	chr1:172580426-172580702(+)$1	276	73	82	15.0392
dmmmmdddd	chr14:103196648-103196910(+)$1	262	46	55	14.1568
hhhhhhrrr	chr17:48829835-48830088(+)$1	253	26	35	13.5686
ggggg[eee	chr7:913015-913293(+)$1	278	225	234	15.0392

#DB
.........	chrX:70520812-70521074(+)$1	1	200	209	14.5490
((((((((.	chr5:137772357-137772632(+)$1	1	130	139	15.3333
((((.....	chr15:76192936-76193250(+)$1	1	186	195	14.4509
.........	chr2:61705447-61705669(-)$1	1	8	17	15.2352
)))))))))	chr4:17802422-17802747(-)$1	1	301	310	15.1372
)))......	chr8:107764157-107764447(+)$1	1	49	58	15.0392
.........	chr2:234745951-234746205(-)$1	1	27	36	16.9019
((((((.((	chr2:47387259-47387498(-)$1	1	153	162	14.4509
.........	chr8:23429817-23430065(+)$1	1	22	31	17.4901
.))))....	chr7:914061-914311(+)$1	1	112	121	14.5490
(((((..((	chrX:70685459-70685747(+)$1	1	30	39	16.0196
(........	chr3:6552182-6552460(+)$1	1	74	83	15.6274
((((((...	chr6:33383845-33384160(+)$1	1	264	273	16.3137
(((((((((	chr10:98718483-98718753(+)$1	1	144	153	17.4901
.(((((...	chr4:39825884-39826169(-)$1	1	50	59	12.7843
))).)...)	chr15:50852454-50852712(-)$1	1	170	179	18.9607
(((((.(((	chr5:314863-315169(+)$1	1	183	192	14.7450
)))))))))	chr19:1009570-1009799(-)$1	1	115	124	18.9607
)).))....	chrM:9749-9976(+)$1	1	200	209	14.8431
)))).((((	chr13:28868896-28869162(+)$1	1	222	231	16.6078
.))))))..	chr22:22114649-22114911(-)$1	1	212	221	17.0980
)))...)))	chr12:133160420-133160900(+)$1	1	199	208	16.9019
((((((...	chr7:914350-914582(+)$1	1	24	33	19.5490
..)))).))	chr10:93788833-93789087(+)$1	1	207	216	18.9607
)))))))))	chr10:22032234-22032494(+)$1	1	232	241	17.0980
.........	chrX:70459447-70459705(-)$1	1	93	102	14.3529
........)	chr3:152558511-152558772(+)$1	1	75	84	13.9607
..)))....	chr1:153902130-153902373(-)$1	1	78	87	16.9019
.........	chr1:244572241-244572469(-)$1	1	90	99	14.2549
))).....)	chr12:98995279-98995564(+)$1	1	94	103	15.7254
.((((((..	chr10:17756956-17757260(+)$1	1	203	212	15.1372
)..))))))	chr6:160176720-160177029(+)$1	1	146	155	17.0980
)))......	chr9:74969315-74969609(-)$1	1	92	101	14.1568
).)).....	chr12:22843070-22843334(+)$1	1	30	39	18.9607
.........	chr12:56989776-56990024(-)$1	1	77	86	16.0196
.)).)))))	chr1:155882862-155883128(-)$1	1	188	197	14.9411
)).((((..	chr14:70238326-70238557(+)$1	1	165	174	15.2352
..(((((((	chr8:128753397-128753658(+)$1	1	16	25	16.9019
.........	chr15:63900732-63900977(-)$1	1	1	10	14.7450
.((.((((.	chr10:1086001-1086281(-)$1	1	164	173	14.5490
)))))....	chr5:145890580-145890898(+)$1	1	169	178	14.8431
(((((.((.	chrX:16862077-16862374(+)$1	1	76	85	13.8627
)))).....	chr1:168044773-168045044(+)$1	1	252	261	14.6470
((...((((	chr17:74266735-74267012(+)$1	1	66	75	16.6078
...((.(((	chr7:135333243-135333573(+)$1	1	172	181	18.9607
((.......	chr12:116397225-116397482(-)$1	1	54	63	16.3137
))))....)	chr22:22114781-22115010(-)$1	1	40	49	16.3137
(....(((.	chr1:172580426-172580702(+)$1	1	73	82	15.0392
(....))))	chr14:103196648-103196910(+)$1	1	46	55	14.1568
((((((...	chr17:48829835-48830088(+)$1	1	26	35	13.5686
(((((.(((	chr7:913015-913293(+)$1	1	225	234	15.0392

#PSSM
U : 0.88	u : 0.05	G : 0.03	A : 0.01	
U : 0.86	u : 0.05	C : 0.03	G : 0.03	
U : 0.92	u : 0.05	G : 0.01	
G : 0.70	U : 0.11	C : 0.05	A : 0.05	a : 0.01	g : 0.01	u : 0.01	
A : 0.47	U : 0.39	a : 0.05	C : 0.03	G : 0.01	u : 0.01	
A : 0.88	a : 0.07	C : 0.01	U : 0.01	
U : 0.82	u : 0.07	A : 0.05	C : 0.03	
A : 0.54	U : 0.17	G : 0.11	C : 0.07	a : 0.05	u : 0.01	
U : 0.86	u : 0.07	A : 0.03	C : 0.01	

#score	807.3921568627457
#seq	51
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_UTR_m3_run1.nuc.txt

#NT
CCUGG	chr3:47447689-47447933(+)$1	244	49	54	14.9999
CCUGG	chr17:40665754-40665990(+)$1	236	26	31	14.9999
CCUGG	chr17:47799741-47799963(-)$1	222	17	22	14.9999
CCUGG	chr7:158738142-158738396(+)$1	254	180	185	14.9999
CCUGG	chr17:80037872-80038116(-)$1	244	107	112	14.9999
CCUGG	chr7:44161576-44161828(-)$1	252	133	138	14.9999
CCUGG	chr1:156438465-156438672(-)$1	207	71	76	14.9999
CCUGG	chr16:29810181-29810413(+)$1	232	125	130	14.9999
CCUGG	chr12:122614010-122614246(+)$1	236	6	11	14.9999
CCUGG	chr19:1055249-1055465(+)$1	216	65	70	14.9999
CCUGG	chr17:36003173-36003465(-)$1	292	204	209	14.9999
CCUGG	chr19:34842263-34842569(+)$1	306	60	65	14.9999
CCUGG	chr12:6637393-6637651(+)$1	258	76	81	14.9999
CCUGG	chr11:62458400-62458647(-)$1	247	4	9	14.9999
CCUGG	chr1:151031808-151032057(-)$1	249	124	129	14.9999
CCUGG	chr2:176046238-176046469(-)$1	231	77	82	14.9999
CCUGG	chr7:151835689-151835937(-)$1	248	97	102	14.9999
CCUGG	chr17:80016576-80016813(-)$1	237	78	83	14.9999
CCUGG	chr5:149829059-149829315(-)$1	256	181	186	14.9999
CCUGG	chr3:121553064-121553319(-)$1	255	70	75	14.9999
CCUGG	chr12:56360850-56361097(+)$1	247	49	54	14.9999
CCUGG	chr19:11669853-11670088(-)$1	235	165	170	14.9999
CCUGG	chr10:64958116-64958374(-)$1	258	84	89	14.9999
CCUGG	chr6:31654945-31655206(-)$1	261	204	209	14.9999
CCUGG	chr17:79976944-79977267(-)$1	323	174	179	14.9999
CCUGG	chr9:139342393-139342597(-)$1	204	11	16	14.9999
CCUGG	chr19:50167788-50168031(-)$1	243	9	14	14.9999
CCUGG	chr20:54967018-54967314(-)$1	296	262	267	14.9999
CCUGG	chr20:60714628-60714843(-)$1	215	199	204	14.9999
CCUGG	chr17:76122932-76123191(-)$1	259	69	74	14.9999
CCUGG	chr2:27356200-27356501(-)$1	301	265	270	14.9999
ccugg	chr6:53158772-53159044(-)$1	272	23	28	14.9999
CCUGG	chr16:4524247-4524513(-)$1	266	55	60	14.9999
CCUGG	chr4:728596-728804(+)$1	208	78	83	14.9999
CCUGG	chr16:70588399-70588611(+)$1	212	43	48	14.9999
CCUGG	chr16:84651329-84651544(-)$1	215	68	73	14.9999
ccugg	chr11:62609099-62609307(-)$1	208	179	184	14.9999
CCUGG	chr7:107531632-107531846(+)$1	214	206	211	14.9999
CCUGG	chr1:39338541-39338791(-)$1	250	107	112	14.9999
CCUGG	chr16:56973031-56973270(+)$1	239	147	152	14.9999
ccugg	chr2:39984216-39984488(-)$1	272	3	8	14.9999
CCUGG	chr16:69200983-69201250(+)$1	267	214	219	14.9999
CCUGG	chr3:186502134-186502357(+)$1	223	47	52	14.9999
CCUGG	chr6:33232451-33232659(-)$1	208	92	97	14.9999
CCUGG	chr1:29063558-29063764(+)$1	206	175	180	14.9999
CCUGG	chr20:33872258-33872521(-)$1	263	13	18	14.9999
CCUGG	chr14:102699829-102700125(-)$1	296	15	20	14.9999
CCUGG	chr19:1370973-1371259(+)$1	286	202	207	14.9999
CCUGG	chrX:151920781-151921020(-)$1	239	120	125	14.9999
CCUGG	chr12:120661334-120661623(-)$1	289	157	162	14.9999
CCUGG	chr17:8159865-8160079(+)$1	214	114	119	14.9999
CCUGG	chr7:128034834-128035043(-)$1	209	111	116	14.9999
CCUGG	chr6:41038721-41038971(-)$1	250	122	127	14.9999
CCUGG	chr20:55968286-55968568(+)$1	282	169	174	14.9999
CCUGG	chr1:11322330-11322613(-)$1	283	124	129	14.9999
CCUGG	chr9:139341559-139341778(-)$1	219	201	206	14.9999
CCUGG	chr6:31707740-31707992(+)$1	252	174	179	14.9999
CCUGG	chr19:50305297-50305514(+)$1	217	68	73	14.9999

#otherMatches

#Struct PSSM
eeeee	chr17:3844814-3845074(-)$1	260	215	220	14.9999
hhh::	chr3:47447689-47447933(+)$1	244	49	54	14.9999
]bb22	chr17:40665754-40665990(+)$1	236	26	31	14.9999
BB{BB	chr17:47799741-47799963(-)$1	222	17	22	14.9999
$$$$h	chr7:158738142-158738396(+)$1	254	180	185	14.9999
iiii#	chr17:80037872-80038116(-)$1	244	107	112	14.9999
ooocc	chr7:44161576-44161828(-)$1	252	133	138	14.9999
ccc!!	chr1:156438465-156438672(-)$1	207	71	76	14.9999
YCCC}	chr16:29810181-29810413(+)$1	232	125	130	14.9999
EEE{D	chr12:122614010-122614246(+)$1	236	6	11	14.9999
GGGKK	chr19:1055249-1055465(+)$1	216	65	70	14.9999
beeee	chr17:36003173-36003465(-)$1	292	204	209	14.9999
333dd	chr19:34842263-34842569(+)$1	306	60	65	14.9999
ZZZDD	chr12:6637393-6637651(+)$1	258	76	81	14.9999
CCC{C	chr11:62458400-62458647(-)$1	247	4	9	14.9999
iiiii	chr1:151031808-151032057(-)$1	249	124	129	14.9999
ppppp	chr2:176046238-176046469(-)$1	231	77	82	14.9999
lhhhh	chr7:151835689-151835937(-)$1	248	97	102	14.9999
fffff	chr17:80016576-80016813(-)$1	237	78	83	14.9999
Ebb[h	chr5:149829059-149829315(-)$1	256	181	186	14.9999
iiiii	chr3:121553064-121553319(-)$1	255	70	75	14.9999
ee:::	chr12:56360850-56361097(+)$1	247	49	54	14.9999
iiidd	chr19:11669853-11670088(-)$1	235	165	170	14.9999
eeerr	chr10:64958116-64958374(-)$1	258	84	89	14.9999
ccccc	chr6:31654945-31655206(-)$1	261	204	209	14.9999
^^^a]	chr17:79976944-79977267(-)$1	323	174	179	14.9999
GGGGG	chr9:139342393-139342597(-)$1	204	11	16	14.9999
GFFFF	chr19:50167788-50168031(-)$1	243	9	14	14.9999
ddddc	chr20:54967018-54967314(-)$1	296	262	267	14.9999
???EE	chr20:60714628-60714843(-)$1	215	199	204	14.9999
JJJJJ	chr17:76122932-76123191(-)$1	259	69	74	14.9999
YYBBY	chr2:27356200-27356501(-)$1	301	265	270	14.9999
bbeee	chr6:53158772-53159044(-)$1	272	23	28	14.9999
cc[a!	chr16:4524247-4524513(-)$1	266	55	60	14.9999
}CCCD	chr4:728596-728804(+)$1	208	78	83	14.9999
"""dd	chr16:70588399-70588611(+)$1	212	43	48	14.9999
oooof	chr16:84651329-84651544(-)$1	215	68	73	14.9999
:ccco	chr11:62609099-62609307(-)$1	208	179	184	14.9999
ddd22	chr7:107531632-107531846(+)$1	214	206	211	14.9999
c::dd	chr1:39338541-39338791(-)$1	250	107	112	14.9999
ddddd	chr16:56973031-56973270(+)$1	239	147	152	14.9999
CGGGG	chr2:39984216-39984488(-)$1	272	3	8	14.9999
!!hhh	chr16:69200983-69201250(+)$1	267	214	219	14.9999
dddnn	chr3:186502134-186502357(+)$1	223	47	52	14.9999
dddd$	chr6:33232451-33232659(-)$1	208	92	97	14.9999
ppppc	chr1:29063558-29063764(+)$1	206	175	180	14.9999
Ddddd	chr20:33872258-33872521(-)$1	263	13	18	14.9999
nnndd	chr14:102699829-102700125(-)$1	296	15	20	14.9999
e[ggg	chr19:1370973-1371259(+)$1	286	202	207	14.9999
ddddG	chrX:151920781-151921020(-)$1	239	120	125	14.9999
eeeee	chr12:120661334-120661623(-)$1	289	157	162	14.9999
dddda	chr17:8159865-8160079(+)$1	214	114	119	14.9999
:::ff	chr7:128034834-128035043(-)$1	209	111	116	14.9999
oofff	chr6:41038721-41038971(-)$1	250	122	127	14.9999
}CCC:	chr20:55968286-55968568(+)$1	282	169	174	14.9999
fffff	chr1:11322330-11322613(-)$1	283	124	129	14.9999
:cccr	chr9:139341559-139341778(-)$1	219	201	206	14.9999
f!!cc	chr6:31707740-31707992(+)$1	252	174	179	14.9999
'''dd	chr19:50305297-50305514(+)$1	217	68	73	14.9999

#DB
)))))	chr17:3844814-3845074(-)$1	1	215	220	14.9999
)))..	chr3:47447689-47447933(+)$1	1	49	54	14.9999
.))..	chr17:40665754-40665990(+)$1	1	26	31	14.9999
((.((	chr17:47799741-47799963(-)$1	1	17	22	14.9999
....(	chr7:158738142-158738396(+)$1	1	180	185	14.9999
((((.	chr17:80037872-80038116(-)$1	1	107	112	14.9999
...))	chr7:44161576-44161828(-)$1	1	133	138	14.9999
(((..	chr1:156438465-156438672(-)$1	1	71	76	14.9999
.))).	chr16:29810181-29810413(+)$1	1	125	130	14.9999
(((.(	chr12:122614010-122614246(+)$1	1	6	11	14.9999
(((..	chr19:1055249-1055465(+)$1	1	65	70	14.9999
)))))	chr17:36003173-36003465(-)$1	1	204	209	14.9999
...))	chr19:34842263-34842569(+)$1	1	60	65	14.9999
...))	chr12:6637393-6637651(+)$1	1	76	81	14.9999
(((.(	chr11:62458400-62458647(-)$1	1	4	9	14.9999
(((((	chr1:151031808-151032057(-)$1	1	124	129	14.9999
.....	chr2:176046238-176046469(-)$1	1	77	82	14.9999
.))))	chr7:151835689-151835937(-)$1	1	97	102	14.9999
)))))	chr17:80016576-80016813(-)$1	1	78	83	14.9999
)((.(	chr5:149829059-149829315(-)$1	1	181	186	14.9999
)))))	chr3:121553064-121553319(-)$1	1	70	75	14.9999
))...	chr12:56360850-56361097(+)$1	1	49	54	14.9999
(((((	chr19:11669853-11670088(-)$1	1	165	170	14.9999
(((..	chr10:64958116-64958374(-)$1	1	84	89	14.9999
(((((	chr6:31654945-31655206(-)$1	1	204	209	14.9999
...).	chr17:79976944-79977267(-)$1	1	174	179	14.9999
(((((	chr9:139342393-139342597(-)$1	1	11	16	14.9999
(((((	chr19:50167788-50168031(-)$1	1	9	14	14.9999
)))))	chr20:54967018-54967314(-)$1	1	262	267	14.9999
...))	chr20:60714628-60714843(-)$1	1	199	204	14.9999
(((((	chr17:76122932-76123191(-)$1	1	69	74	14.9999
..)).	chr2:27356200-27356501(-)$1	1	265	270	14.9999
)))))	chr6:53158772-53159044(-)$1	1	23	28	14.9999
((.(.	chr16:4524247-4524513(-)$1	1	55	60	14.9999
.))))	chr4:728596-728804(+)$1	1	78	83	14.9999
...((	chr16:70588399-70588611(+)$1	1	43	48	14.9999
....)	chr16:84651329-84651544(-)$1	1	68	73	14.9999
.(((.	chr11:62609099-62609307(-)$1	1	179	184	14.9999
)))..	chr7:107531632-107531846(+)$1	1	206	211	14.9999
)..((	chr1:39338541-39338791(-)$1	1	107	112	14.9999
)))((	chr16:56973031-56973270(+)$1	1	147	152	14.9999
(((((	chr2:39984216-39984488(-)$1	1	3	8	14.9999
..(((	chr16:69200983-69201250(+)$1	1	214	219	14.9999
(((..	chr3:186502134-186502357(+)$1	1	47	52	14.9999
((((.	chr6:33232451-33232659(-)$1	1	92	97	14.9999
....)	chr1:29063558-29063764(+)$1	1	175	180	14.9999
(((((	chr20:33872258-33872521(-)$1	1	13	18	14.9999
...))	chr14:102699829-102700125(-)$1	1	15	20	14.9999
(.(((	chr19:1370973-1371259(+)$1	1	202	207	14.9999
)))))	chrX:151920781-151921020(-)$1	1	120	125	14.9999
)))))	chr12:120661334-120661623(-)$1	1	157	162	14.9999
)))))	chr17:8159865-8160079(+)$1	1	114	119	14.9999
...((	chr7:128034834-128035043(-)$1	1	111	116	14.9999
..)))	chr6:41038721-41038971(-)$1	1	122	127	14.9999
.))).	chr20:55968286-55968568(+)$1	1	169	174	14.9999
(((((	chr1:11322330-11322613(-)$1	1	124	129	14.9999
.(((.	chr9:139341559-139341778(-)$1	1	201	206	14.9999
(..((	chr6:31707740-31707992(+)$1	1	174	179	14.9999
...((	chr19:50305297-50305514(+)$1	1	68	73	14.9999

#PSSM
C : 0.94	c : 0.05	
C : 0.94	c : 0.05	
U : 0.94	u : 0.05	
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	

#score	884.9999999999999
#seq	59
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_transcript_m2_run2.nuc.txt

#NT
GCGCUgg	chr16:5121867-5122156(+)$1	289	54	61	13.0588
GAGCUGG	chr22:43024127-43024382(-)$1	255	59	66	13.4264
GGGCUGG	chrX:153588527-153588768(-)$1	241	110	117	17.1029
GGCCUGG	chr3:50308418-50308646(+)$1	228	67	74	13.7205
GGGCCGG	chr11:1784922-1785168(-)$1	246	159	166	12.9852
UGGCUGG	chr19:11226667-11226927(+)$1	260	45	52	12.9852
GGGCUGG	chr3:79068182-79068501(-)$1	319	173	180	17.1029
UGGCUGG	chr5:137895666-137895881(-)$1	215	11	18	12.9852
GGGCUGC	chr5:131530553-131530801(-)$1	248	169	176	13.4264
GGCCUGG	chr12:57627006-57627226(+)$1	220	160	167	13.7205
ggccugg	chr6:34737967-34738218(+)$1	251	1	8	13.7205
GGCCUGG	chr6:27777958-27778185(+)$1	227	20	27	13.7205
GGGCUGG	chr20:23614338-23614576(-)$1	238	35	42	17.1029
GGCCUGG	chr3:133474106-133474308(+)$1	202	24	31	13.7205
GGGCUGG	chr17:76967789-76968040(-)$1	251	238	245	17.1029
GGGCUGU	chr9:116824911-116825127(-)$1	216	99	106	12.9117
GGGCCGG	chr1:150551749-150552002(-)$1	253	48	55	12.9852
GGGCUGG	chr16:88717308-88717546(-)$1	238	30	37	17.1029
GAGCUGG	chr11:498673-498923(-)$1	250	66	73	13.4264
gggccgg	chr16:12009301-12009593(-)$1	292	133	140	12.9852
GGGCGGG	chr1:151371970-151372247(+)$1	277	127	134	12.9852
GGGGUGG	chr5:114961531-114961797(-)$1	266	211	218	12.5441
GGGCUGG	chr6:122792743-122793006(-)$1	263	229	236	17.1029
GGGCUGG	chr1:230846391-230846617(-)$1	226	100	107	17.1029
GAGCUGG	chr19:19017669-19017916(-)$1	247	11	18	13.4264
GUGCUGG	chr8:145639107-145639362(-)$1	255	56	63	13.3529
GGUCUGG	chr11:62648438-62648704(+)$1	266	177	184	13.0588
GGGCUGC	chr8:144103005-144103341(+)$1	336	120	127	13.4264
UGGCUGG	chr2:27430521-27430759(-)$1	238	4	11	12.9852
GGGGUGG	chr17:40062773-40062998(-)$1	225	193	200	12.5441
UGGCUGG	chr14:70346323-70346588(+)$1	265	61	68	12.9852
GGGCUGG	chr8:22269448-22269690(+)$1	242	75	82	17.1029
GGGCAGG	chr1:167691124-167691402(+)$1	278	42	49	12.9852
GUGCUGG	chr20:35827461-35827691(+)$1	230	159	166	13.3529
GGGCUGG	chr18:11981554-11981834(+)$1	280	81	88	17.1029
GAGCUGG	chr3:58108877-58109129(+)$1	252	15	22	13.4264
GGGCUGG	chr2:134877486-134877774(+)$1	288	180	187	17.1029
GGGCUGC	chr16:11643349-11643652(-)$1	303	60	67	13.4264
GGGCGGG	chr17:79849552-79849809(+)$1	257	151	158	12.9852
GGGCUGG	chr12:48383473-48383689(-)$1	216	35	42	17.1029
GGGCUGG	chr5:137897178-137897399(-)$1	221	165	172	17.1029
GGGCUGG	chr1:1374551-1374798(+)$1	247	224	231	17.1029
GGGCUGC	chr11:61081759-61082054(-)$1	295	15	22	13.4264
CGGCUGG	chr19:52714540-52714815(+)$1	275	101	108	12.7647
GGGCUGA	chr19:6707719-6707983(-)$1	264	124	131	12.9117
CGGCUGG	chr11:102323258-102323528(-)$1	270	131	138	12.7647
GUGCUGG	chr6:52141783-52142055(-)$1	272	13	20	13.3529
GGGCUGC	chr19:40329595-40329839(-)$1	244	115	122	13.4264
GGGGUGG	chr17:80050755-80050983(-)$1	228	33	40	12.5441
GGCCUGG	chr15:64448912-64449170(-)$1	258	119	126	13.7205
GUGCUGG	chr3:48640896-48641150(-)$1	254	135	142	13.3529
GGCCUGG	chr1:230839912-230840137(-)$1	225	17	24	13.7205
GGCCUGG	chr3:49395464-49395812(-)$1	348	308	315	13.7205
GGGCUGC	chr2:128848809-128849102(+)$1	293	124	131	13.4264
GAGCUGG	chr19:8550654-8550934(+)$1	280	270	277	13.4264
GGGCAGG	chr16:30078523-30078787(+)$1	264	168	175	12.9852
GGCCUGG	chr6:138428163-138428520(-)$1	357	55	62	13.7205
gggcugc	chr14:103988115-103988377(-)$1	262	23	30	13.4264
GGACUGG	chr11:6638179-6638471(-)$1	292	11	18	13.0588
GGGCUGC	chr2:85577094-85577346(-)$1	252	60	67	13.4264
GUGCUGG	chr9:116838871-116839090(-)$1	219	157	164	13.3529
GGGCUGG	chr12:7289444-7289697(+)$1	253	132	139	17.1029
GGCCUGG	chr12:6643883-6644100(+)$1	217	13	20	13.7205
GGGCUGG	chr5:177019262-177019497(+)$1	235	1	8	17.1029
GAGCUGG	chr5:149826376-149826623(-)$1	247	206	213	13.4264
GGGCAGG	chr19:40331001-40331252(-)$1	251	234	241	12.9852
UGGCUGG	chr2:26568912-26569258(+)$1	346	189	196	12.9852

#otherMatches

#Struct PSSM
::bbnnn	chr17:40063594-40063833(-)$1	239	118	125	12.9852
EEEEEKK	chr16:5121867-5122156(+)$1	289	54	61	13.0588
{DDDD{A	chr22:43024127-43024382(-)$1	255	59	66	13.4264
eeeee]c	chrX:153588527-153588768(-)$1	241	110	117	17.1029
cccoooo	chr3:50308418-50308646(+)$1	228	67	74	13.7205
EEEEEff	chr11:1784922-1785168(-)$1	246	159	166	12.9852
"ccc[cc	chr19:11226667-11226927(+)$1	260	45	52	12.9852
"""eeee	chr3:79068182-79068501(-)$1	319	173	180	17.1029
cc[dddd	chr5:137895666-137895881(-)$1	215	11	18	12.9852
:JJJJJJ	chr5:131530553-131530801(-)$1	248	169	176	13.4264
ccccc]b	chr12:57627006-57627226(+)$1	220	160	167	13.7205
:::FFFF	chr6:34737967-34738218(+)$1	251	1	8	13.7205
EEEEECC	chr6:27777958-27778185(+)$1	227	20	27	13.7205
ccc[ccc	chr20:23614338-23614576(-)$1	238	35	42	17.1029
ddd[===	chr3:133474106-133474308(+)$1	202	24	31	13.7205
CYYHHHH	chr17:76967789-76968040(-)$1	251	238	245	17.1029
ee:DDDD	chr9:116824911-116825127(-)$1	216	99	106	12.9117
ggggggD	chr1:150551749-150552002(-)$1	253	48	55	12.9852
]gggggg	chr16:88717308-88717546(-)$1	238	30	37	17.1029
hhhhhhh	chr11:498673-498923(-)$1	250	66	73	13.4264
eee!!ee	chr16:12009301-12009593(-)$1	292	133	140	12.9852
$$dddde	chr1:151371970-151372247(+)$1	277	127	134	12.9852
c[cccee	chr5:114961531-114961797(-)$1	266	211	218	12.5441
ff[bbnn	chr6:122792743-122793006(-)$1	263	229	236	17.1029
KKFFFFF	chr1:230846391-230846617(-)$1	226	100	107	17.1029
"bb[ddd	chr19:19017669-19017916(-)$1	247	11	18	13.4264
!!ccc[b	chr8:145639107-145639362(-)$1	255	56	63	13.3529
eeeeenn	chr11:62648438-62648704(+)$1	266	177	184	13.0588
[ccc[ff	chr8:144103005-144103341(+)$1	336	120	127	13.4264
B{DDDDC	chr2:27430521-27430759(-)$1	238	4	11	12.9852
FFFFFF}	chr17:40062773-40062998(-)$1	225	193	200	12.5441
]ccc:dd	chr14:70346323-70346588(+)$1	265	61	68	12.9852
cc=====	chr8:22269448-22269690(+)$1	242	75	82	17.1029
ii:::dd	chr1:167691124-167691402(+)$1	278	42	49	12.9852
YYFFFFF	chr20:35827461-35827691(+)$1	230	159	166	13.3529
B{CCCNN	chr18:11981554-11981834(+)$1	280	81	88	17.1029
eeee###	chr3:58108877-58109129(+)$1	252	15	22	13.4264
HHHH}BB	chr2:134877486-134877774(+)$1	288	180	187	17.1029
eemmmme	chr16:11643349-11643652(-)$1	303	60	67	13.4264
ooa22ee	chr17:79849552-79849809(+)$1	257	151	158	12.9852
GGGGGGK	chr12:48383473-48383689(-)$1	216	35	42	17.1029
22eeeee	chr5:137897178-137897399(-)$1	221	165	172	17.1029
CC}A}JJ	chr1:1374551-1374798(+)$1	247	224	231	17.1029
NA{EEEE	chr11:61081759-61082054(-)$1	295	15	22	13.4264
]dddd]a	chr19:52714540-52714815(+)$1	275	101	108	12.7647
HHdddd!	chr19:6707719-6707983(-)$1	264	124	131	12.9117
ncccccc	chr11:102323258-102323528(-)$1	270	131	138	12.7647
hhh[ccc	chr6:52141783-52142055(-)$1	272	13	20	13.3529
[bb[ddd	chr19:40329595-40329839(-)$1	244	115	122	13.4264
ggggggd	chr17:80050755-80050983(-)$1	228	33	40	12.5441
DDDZZZG	chr15:64448912-64449170(-)$1	258	119	126	13.7205
b:ddddm	chr3:48640896-48641150(-)$1	254	135	142	13.3529
cccnnnn	chr1:230839912-230840137(-)$1	225	17	24	13.7205
gggccc]	chr3:49395464-49395812(-)$1	348	308	315	13.7205
dddd555	chr2:128848809-128849102(+)$1	293	124	131	13.4264
hhhh]dd	chr19:8550654-8550934(+)$1	280	270	277	13.4264
55=====	chr16:30078523-30078787(+)$1	264	168	175	12.9852
iiii[dd	chr6:138428163-138428520(-)$1	357	55	62	13.7205
ddGGGGG	chr14:103988115-103988377(-)$1	262	23	30	13.4264
ddd"""e	chr11:6638179-6638471(-)$1	292	11	18	13.0588
DDDD{BB	chr2:85577094-85577346(-)$1	252	60	67	13.4264
ggggggg	chr9:116838871-116839090(-)$1	219	157	164	13.3529
dddd:ee	chr12:7289444-7289697(+)$1	253	132	139	17.1029
occc::d	chr12:6643883-6644100(+)$1	217	13	20	13.7205
cccccc[	chr5:177019262-177019497(+)$1	235	1	8	17.1029
c[bb[bb	chr5:149826376-149826623(-)$1	247	206	213	13.4264
22bb22b	chr19:40331001-40331252(-)$1	251	234	241	12.9852
ppppeee	chr2:26568912-26569258(+)$1	346	189	196	12.9852

#DB
..((...	chr17:40063594-40063833(-)$1	1	118	125	12.9852
(((((..	chr16:5121867-5122156(+)$1	1	54	61	13.0588
.((((.(	chr22:43024127-43024382(-)$1	1	59	66	13.4264
))))).)	chrX:153588527-153588768(-)$1	1	110	117	17.1029
(((....	chr3:50308418-50308646(+)$1	1	67	74	13.7205
)))))((	chr11:1784922-1785168(-)$1	1	159	166	12.9852
.(((.((	chr19:11226667-11226927(+)$1	1	45	52	12.9852
...((((	chr3:79068182-79068501(-)$1	1	173	180	17.1029
((.((((	chr5:137895666-137895881(-)$1	1	11	18	12.9852
.))))))	chr5:131530553-131530801(-)$1	1	169	176	13.4264
))))).)	chr12:57627006-57627226(+)$1	1	160	167	13.7205
...((((	chr6:34737967-34738218(+)$1	1	1	8	13.7205
(((((((	chr6:27777958-27778185(+)$1	1	20	27	13.7205
(((.(((	chr20:23614338-23614576(-)$1	1	35	42	17.1029
(((.(((	chr3:133474106-133474308(+)$1	1	24	31	13.7205
)..))))	chr17:76967789-76968040(-)$1	1	238	245	17.1029
)).))))	chr9:116824911-116825127(-)$1	1	99	106	12.9117
))))))(	chr1:150551749-150552002(-)$1	1	48	55	12.9852
.))))))	chr16:88717308-88717546(-)$1	1	30	37	17.1029
(((((((	chr11:498673-498923(-)$1	1	66	73	13.4264
(((..((	chr16:12009301-12009593(-)$1	1	133	140	12.9852
..(((((	chr1:151371970-151372247(+)$1	1	127	134	12.9852
(.(((((	chr5:114961531-114961797(-)$1	1	211	218	12.5441
((.((..	chr6:122792743-122793006(-)$1	1	229	236	17.1029
..(((((	chr1:230846391-230846617(-)$1	1	100	107	17.1029
.((.(((	chr19:19017669-19017916(-)$1	1	11	18	13.4264
..(((.(	chr8:145639107-145639362(-)$1	1	56	63	13.3529
(((((..	chr11:62648438-62648704(+)$1	1	177	184	13.0588
.(((.((	chr8:144103005-144103341(+)$1	1	120	127	13.4264
(.(((((	chr2:27430521-27430759(-)$1	1	4	11	12.9852
)))))).	chr17:40062773-40062998(-)$1	1	193	200	12.5441
.))).((	chr14:70346323-70346588(+)$1	1	61	68	12.9852
))(((((	chr8:22269448-22269690(+)$1	1	75	82	17.1029
))...((	chr1:167691124-167691402(+)$1	1	42	49	12.9852
..)))))	chr20:35827461-35827691(+)$1	1	159	166	13.3529
(.(((..	chr18:11981554-11981834(+)$1	1	81	88	17.1029
((((...	chr3:58108877-58109129(+)$1	1	15	22	13.4264
)))).))	chr2:134877486-134877774(+)$1	1	180	187	17.1029
((....)	chr16:11643349-11643652(-)$1	1	60	67	13.4264
..)..))	chr17:79849552-79849809(+)$1	1	151	158	12.9852
((((((.	chr12:48383473-48383689(-)$1	1	35	42	17.1029
..)))))	chr5:137897178-137897399(-)$1	1	165	172	17.1029
)).).))	chr1:1374551-1374798(+)$1	1	224	231	17.1029
.(.((((	chr11:61081759-61082054(-)$1	1	15	22	13.4264
.)))).)	chr19:52714540-52714815(+)$1	1	101	108	12.7647
))((((.	chr19:6707719-6707983(-)$1	1	124	131	12.9117
.)))(((	chr11:102323258-102323528(-)$1	1	131	138	12.7647
(((.(((	chr6:52141783-52142055(-)$1	1	13	20	13.3529
.((.(((	chr19:40329595-40329839(-)$1	1	115	122	13.4264
)))))))	chr17:80050755-80050983(-)$1	1	33	40	12.5441
)))...)	chr15:64448912-64449170(-)$1	1	119	126	13.7205
).((((.	chr3:48640896-48641150(-)$1	1	135	142	13.3529
(((....	chr1:230839912-230840137(-)$1	1	17	24	13.7205
)))))).	chr3:49395464-49395812(-)$1	1	308	315	13.7205
))))...	chr2:128848809-128849102(+)$1	1	124	131	13.4264
)))).))	chr19:8550654-8550934(+)$1	1	270	277	13.4264
..)))))	chr16:30078523-30078787(+)$1	1	168	175	12.9852
((((.((	chr6:138428163-138428520(-)$1	1	55	62	13.7205
))(((((	chr14:103988115-103988377(-)$1	1	23	30	13.4264
(((...(	chr11:6638179-6638471(-)$1	1	11	18	13.0588
((((.((	chr2:85577094-85577346(-)$1	1	60	67	13.4264
(((((((	chr9:116838871-116839090(-)$1	1	157	164	13.3529
)))).((	chr12:7289444-7289697(+)$1	1	132	139	17.1029
.)))..(	chr12:6643883-6644100(+)$1	1	13	20	13.7205
((((((.	chr5:177019262-177019497(+)$1	1	1	8	17.1029
(.((.((	chr5:149826376-149826623(-)$1	1	206	213	13.4264
..))..)	chr19:40331001-40331252(-)$1	1	234	241	12.9852
....)))	chr2:26568912-26569258(+)$1	1	189	196	12.9852

#PSSM
G : 0.85	U : 0.07	g : 0.04	C : 0.02	
G : 0.77	A : 0.08	U : 0.07	g : 0.04	C : 0.01	
G : 0.79	C : 0.13	g : 0.02	c : 0.01	U : 0.01	A : 0.01	
C : 0.91	c : 0.04	G : 0.04	
U : 0.83	G : 0.04	A : 0.04	C : 0.02	u : 0.02	c : 0.01	
G : 0.94	g : 0.05	
G : 0.80	C : 0.10	g : 0.04	U : 0.01	A : 0.01	c : 0.01	

#score	958.4411764705869
#seq	68
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_transcript_m3_run2.nuc.txt

#NT
CAGG	chr15:23048843-23049151(-)$1	308	67	71	11.9999
CAGG	chr11:64851367-64851628(-)$1	261	78	82	11.9999
CAGG	chr11:32956355-32956681(+)$1	326	275	279	11.9999
CAGG	chr4:113568307-113568609(+)$1	302	275	279	11.9999
CAGG	chr7:99091661-99091908(-)$1	247	212	216	11.9999
CAGG	chr1:52343797-52344027(-)$1	230	178	182	11.9999
CAGG	chr8:125486256-125486503(-)$1	247	212	216	11.9999
cagg	chr17:79603864-79604114(-)$1	250	110	114	11.9999
CAGG	chr6:42713348-42713603(-)$1	255	65	69	11.9999
CAGG	chr8:29952951-29953284(+)$1	333	58	62	11.9999
CAGG	chr7:12395726-12395945(-)$1	219	53	57	11.9999
CAGG	chr5:95067010-95067236(+)$1	226	31	35	11.9999
CAGG	chr9:134072899-134073153(+)$1	254	78	82	11.9999
CAGG	chr17:27620807-27621066(-)$1	259	241	245	11.9999
CAGG	chr1:71512527-71512840(-)$1	313	56	60	11.9999
CAGG	chr11:45955251-45955509(-)$1	258	134	138	11.9999
CAGG	chr6:68598482-68598696(-)$1	214	86	90	11.9999
CAGG	chr1:11860112-11860386(-)$1	274	115	119	11.9999
CAGG	chr17:46698906-46699149(-)$1	243	53	57	11.9999
CAGG	chr16:30593795-30594052(-)$1	257	70	74	11.9999
CAGG	chr11:61136132-61136429(+)$1	297	1	5	11.9999
CAGG	chr20:35240424-35240722(+)$1	298	88	92	11.9999
CAGG	chrX:73071103-73071355(-)$1	252	131	135	11.9999
CAGG	chr6:7230186-7230442(+)$1	256	93	97	11.9999
CAGG	chr3:146262222-146262508(-)$1	286	66	70	11.9999
CAGG	chr21:46596363-46596602(+)$1	239	213	217	11.9999
CAGG	chr8:33310716-33310962(-)$1	246	65	69	11.9999
CAGG	chr20:278640-278879(+)$1	239	37	41	11.9999
CAGG	chr22:21965253-21965499(+)$1	246	18	22	11.9999
CAGG	chr4:2906478-2906733(+)$1	255	100	104	11.9999
CAGG	chr5:68466995-68467298(+)$1	303	167	171	11.9999
caGG	chr22:49988799-49989032(-)$1	233	117	121	11.9999
CAGG	chr2:234758386-234758613(-)$1	227	131	135	11.9999
CAGG	chr19:17448391-17448645(+)$1	254	4	8	11.9999
CAGG	chr1:32831785-32832048(-)$1	263	247	251	11.9999
CAGG	chr2:3392149-3392369(+)$1	220	49	53	11.9999
CAGG	chr17:27225521-27225773(-)$1	252	112	116	11.9999
CAGG	chr6:88411305-88411556(-)$1	251	225	229	11.9999
CAGG	chr8:128750938-128751182(+)$1	244	26	30	11.9999
CAGG	chr20:55983636-55983899(+)$1	263	98	102	11.9999
CAGG	chr1:78478758-78479009(+)$1	251	199	203	11.9999
CAGG	chr19:3759766-3760024(-)$1	258	21	25	11.9999
CAGG	chr9:139358753-139358988(-)$1	235	26	30	11.9999
CAGG	chr2:158115829-158116072(+)$1	243	28	32	11.9999
CAGG	chr1:249210813-249211073(+)$1	260	83	87	11.9999
CAGG	chr16:2263961-2264189(-)$1	228	132	136	11.9999
CAGG	chr19:4793119-4793336(+)$1	217	85	89	11.9999
CAGG	chr1:59147766-59148026(-)$1	260	112	116	11.9999
CAGG	chr8:48920957-48921219(+)$1	262	48	52	11.9999
CAGG	chr8:94745842-94746108(-)$1	266	231	235	11.9999
CAGG	chr7:142985486-142985738(+)$1	252	124	128	11.9999
CAGG	chr11:32956550-32956803(+)$1	253	80	84	11.9999
CAGG	chrX:48772384-48772635(-)$1	251	18	22	11.9999
CAGG	chr9:111853083-111853392(-)$1	309	188	192	11.9999
CAGG	chr11:65089223-65089505(+)$1	282	5	9	11.9999
CAGG	chr2:145187345-145187640(-)$1	295	74	78	11.9999
CAGG	chr19:14523511-14523750(-)$1	239	108	112	11.9999
CAGG	chr7:5036757-5037016(+)$1	259	22	26	11.9999
CAGG	chr6:32084226-32084502(-)$1	276	56	60	11.9999
CAGG	chrX:153688862-153689097(+)$1	235	9	13	11.9999
CAGG	chr19:18391408-18391623(-)$1	215	11	15	11.9999
CAGG	chr10:45923974-45924231(+)$1	257	29	33	11.9999
CAGG	chr22:49987675-49987921(-)$1	246	55	59	11.9999
CAGG	chr19:5080146-5080400(+)$1	254	217	221	11.9999
CAGG	chr12:122626995-122627238(+)$1	243	2	6	11.9999
CAGG	chr2:47630250-47630490(+)$1	240	58	62	11.9999
CAGG	chr17:54968929-54969202(-)$1	273	57	61	11.9999
CAGG	chr7:102789262-102789520(-)$1	258	87	91	11.9999
CAGG	chr1:228582686-228582939(-)$1	253	41	45	11.9999
CAGG	chr1:24086061-24086372(+)$1	311	38	42	11.9999
CAGG	chr7:150934500-150934738(+)$1	238	2	6	11.9999
CAGG	chr16:53190325-53190578(+)$1	253	171	175	11.9999
CAGG	chr16:89661762-89661975(+)$1	213	150	154	11.9999
CAGG	chr21:34922513-34922738(+)$1	225	98	102	11.9999
CAGG	chr4:74123839-74124087(-)$1	248	208	212	11.9999
CAGG	chr1:110527416-110527629(+)$1	213	13	17	11.9999
CAGG	chr1:11850334-11850603(-)$1	269	23	27	11.9999
CAGG	chr15:70389691-70389962(-)$1	271	87	91	11.9999
CAGG	chr9:101552521-101552795(-)$1	274	74	78	11.9999

#otherMatches

#Struct PSSM
hhhh	chr9:37126327-37126622(+)$1	295	148	152	11.9999
FFFF	chr15:23048843-23049151(-)$1	308	67	71	11.9999
elll	chr11:64851367-64851628(-)$1	261	78	82	11.9999
vvbb	chr11:32956355-32956681(+)$1	326	275	279	11.9999
dddd	chr4:113568307-113568609(+)$1	302	275	279	11.9999
]ddd	chr7:99091661-99091908(-)$1	247	212	216	11.9999
""cc	chr1:52343797-52344027(-)$1	230	178	182	11.9999
qccc	chr8:125486256-125486503(-)$1	247	212	216	11.9999
ffff	chr17:79603864-79604114(-)$1	250	110	114	11.9999
:::G	chr6:42713348-42713603(-)$1	255	65	69	11.9999
dd[a	chr8:29952951-29953284(+)$1	333	58	62	11.9999
eeee	chr7:12395726-12395945(-)$1	219	53	57	11.9999
C:bb	chr5:95067010-95067236(+)$1	226	31	35	11.9999
22cc	chr9:134072899-134073153(+)$1	254	78	82	11.9999
::BB	chr17:27620807-27621066(-)$1	259	241	245	11.9999
ccac	chr1:71512527-71512840(-)$1	313	56	60	11.9999
DDD{	chr11:45955251-45955509(-)$1	258	134	138	11.9999
addd	chr6:68598482-68598696(-)$1	214	86	90	11.9999
bb:G	chr1:11860112-11860386(-)$1	274	115	119	11.9999
]fff	chr17:46698906-46699149(-)$1	243	53	57	11.9999
666d	chr16:30593795-30594052(-)$1	257	70	74	11.9999
::==	chr11:61136132-61136429(+)$1	297	1	5	11.9999
e]cc	chr20:35240424-35240722(+)$1	298	88	92	11.9999
cc[f	chrX:73071103-73071355(-)$1	252	131	135	11.9999
3ddd	chr6:7230186-7230442(+)$1	256	93	97	11.9999
:::B	chr3:146262222-146262508(-)$1	286	66	70	11.9999
ddd]	chr21:46596363-46596602(+)$1	239	213	217	11.9999
3fff	chr8:33310716-33310962(-)$1	246	65	69	11.9999
CC{B	chr20:278640-278879(+)$1	239	37	41	11.9999
eeeo	chr22:21965253-21965499(+)$1	246	18	22	11.9999
e!!f	chr4:2906478-2906733(+)$1	255	100	104	11.9999
dddd	chr5:68466995-68467298(+)$1	303	167	171	11.9999
eeee	chr22:49988799-49989032(-)$1	233	117	121	11.9999
EEE}	chr2:234758386-234758613(-)$1	227	131	135	11.9999
DDDD	chr19:17448391-17448645(+)$1	254	4	8	11.9999
hhhh	chr1:32831785-32832048(-)$1	263	247	251	11.9999
cc[b	chr2:3392149-3392369(+)$1	220	49	53	11.9999
fFFF	chr17:27225521-27225773(-)$1	252	112	116	11.9999
22cc	chr6:88411305-88411556(-)$1	251	225	229	11.9999
::ff	chr8:128750938-128751182(+)$1	244	26	30	11.9999
eccc	chr20:55983636-55983899(+)$1	263	98	102	11.9999
dddn	chr1:78478758-78479009(+)$1	251	199	203	11.9999
CCCC	chr19:3759766-3760024(-)$1	258	21	25	11.9999
ffff	chr9:139358753-139358988(-)$1	235	26	30	11.9999
:hhh	chr2:158115829-158116072(+)$1	243	28	32	11.9999
2bb]	chr1:249210813-249211073(+)$1	260	83	87	11.9999
ffff	chr16:2263961-2264189(-)$1	228	132	136	11.9999
hhhh	chr19:4793119-4793336(+)$1	217	85	89	11.9999
g[ee	chr1:59147766-59148026(-)$1	260	112	116	11.9999
ccc[	chr8:48920957-48921219(+)$1	262	48	52	11.9999
gggg	chr8:94745842-94746108(-)$1	266	231	235	11.9999
a$$$	chr7:142985486-142985738(+)$1	252	124	128	11.9999
!ddd	chr11:32956550-32956803(+)$1	253	80	84	11.9999
D{BB	chrX:48772384-48772635(-)$1	251	18	22	11.9999
eeee	chr9:111853083-111853392(-)$1	309	188	192	11.9999
eeee	chr11:65089223-65089505(+)$1	282	5	9	11.9999
cccl	chr2:145187345-145187640(-)$1	295	74	78	11.9999
nggg	chr19:14523511-14523750(-)$1	239	108	112	11.9999
b!!b	chr7:5036757-5037016(+)$1	259	22	26	11.9999
EEMM	chr6:32084226-32084502(-)$1	276	56	60	11.9999
gggn	chrX:153688862-153689097(+)$1	235	9	13	11.9999
iiii	chr19:18391408-18391623(-)$1	215	11	15	11.9999
''dd	chr10:45923974-45924231(+)$1	257	29	33	11.9999
ee]d	chr22:49987675-49987921(-)$1	246	55	59	11.9999
^^^^	chr19:5080146-5080400(+)$1	254	217	221	11.9999
DDDD	chr12:122626995-122627238(+)$1	243	2	6	11.9999
cc]a	chr2:47630250-47630490(+)$1	240	58	62	11.9999
cc]=	chr17:54968929-54969202(-)$1	273	57	61	11.9999
[bb!	chr7:102789262-102789520(-)$1	258	87	91	11.9999
ddee	chr1:228582686-228582939(-)$1	253	41	45	11.9999
H{BB	chr1:24086061-24086372(+)$1	311	38	42	11.9999
C{GG	chr7:150934500-150934738(+)$1	238	2	6	11.9999
oddd	chr16:53190325-53190578(+)$1	253	171	175	11.9999
cccl	chr16:89661762-89661975(+)$1	213	150	154	11.9999
::::	chr21:34922513-34922738(+)$1	225	98	102	11.9999
b22g	chr4:74123839-74124087(-)$1	248	208	212	11.9999
eeee	chr1:110527416-110527629(+)$1	213	13	17	11.9999
ffff	chr1:11850334-11850603(-)$1	269	23	27	11.9999
CLLL	chr15:70389691-70389962(-)$1	271	87	91	11.9999
d]bb	chr9:101552521-101552795(-)$1	274	74	78	11.9999

#DB
))))	chr9:37126327-37126622(+)$1	1	148	152	11.9999
((((	chr15:23048843-23049151(-)$1	1	67	71	11.9999
(...	chr11:64851367-64851628(-)$1	1	78	82	11.9999
..))	chr11:32956355-32956681(+)$1	1	275	279	11.9999
))))	chr4:113568307-113568609(+)$1	1	275	279	11.9999
.)))	chr7:99091661-99091908(-)$1	1	212	216	11.9999
..((	chr1:52343797-52344027(-)$1	1	178	182	11.9999
.)))	chr8:125486256-125486503(-)$1	1	212	216	11.9999
))))	chr17:79603864-79604114(-)$1	1	110	114	11.9999
...(	chr6:42713348-42713603(-)$1	1	65	69	11.9999
((.(	chr8:29952951-29953284(+)$1	1	58	62	11.9999
((((	chr7:12395726-12395945(-)$1	1	53	57	11.9999
(.((	chr5:95067010-95067236(+)$1	1	31	35	11.9999
..))	chr9:134072899-134073153(+)$1	1	78	82	11.9999
..))	chr17:27620807-27621066(-)$1	1	241	245	11.9999
((((	chr1:71512527-71512840(-)$1	1	56	60	11.9999
(((.	chr11:45955251-45955509(-)$1	1	134	138	11.9999
((((	chr6:68598482-68598696(-)$1	1	86	90	11.9999
)).(	chr1:11860112-11860386(-)$1	1	115	119	11.9999
.)))	chr17:46698906-46699149(-)$1	1	53	57	11.9999
...)	chr16:30593795-30594052(-)$1	1	70	74	11.9999
..((	chr11:61136132-61136429(+)$1	1	1	5	11.9999
).))	chr20:35240424-35240722(+)$1	1	88	92	11.9999
((.(	chrX:73071103-73071355(-)$1	1	131	135	11.9999
.)))	chr6:7230186-7230442(+)$1	1	93	97	11.9999
...(	chr3:146262222-146262508(-)$1	1	66	70	11.9999
))).	chr21:46596363-46596602(+)$1	1	213	217	11.9999
.)))	chr8:33310716-33310962(-)$1	1	65	69	11.9999
((.(	chr20:278640-278879(+)$1	1	37	41	11.9999
(((.	chr22:21965253-21965499(+)$1	1	18	22	11.9999
(..(	chr4:2906478-2906733(+)$1	1	100	104	11.9999
))))	chr5:68466995-68467298(+)$1	1	167	171	11.9999
((((	chr22:49988799-49989032(-)$1	1	117	121	11.9999
))).	chr2:234758386-234758613(-)$1	1	131	135	11.9999
((((	chr19:17448391-17448645(+)$1	1	4	8	11.9999
))))	chr1:32831785-32832048(-)$1	1	247	251	11.9999
((.(	chr2:3392149-3392369(+)$1	1	49	53	11.9999
)(((	chr17:27225521-27225773(-)$1	1	112	116	11.9999
..))	chr6:88411305-88411556(-)$1	1	225	229	11.9999
..((	chr8:128750938-128751182(+)$1	1	26	30	11.9999
((((	chr20:55983636-55983899(+)$1	1	98	102	11.9999
(((.	chr1:78478758-78479009(+)$1	1	199	203	11.9999
((((	chr19:3759766-3760024(-)$1	1	21	25	11.9999
((((	chr9:139358753-139358988(-)$1	1	26	30	11.9999
.(((	chr2:158115829-158116072(+)$1	1	28	32	11.9999
.)).	chr1:249210813-249211073(+)$1	1	83	87	11.9999
))))	chr16:2263961-2264189(-)$1	1	132	136	11.9999
))))	chr19:4793119-4793336(+)$1	1	85	89	11.9999
(.((	chr1:59147766-59148026(-)$1	1	112	116	11.9999
(((.	chr8:48920957-48921219(+)$1	1	48	52	11.9999
))))	chr8:94745842-94746108(-)$1	1	231	235	11.9999
(...	chr7:142985486-142985738(+)$1	1	124	128	11.9999
.(((	chr11:32956550-32956803(+)$1	1	80	84	11.9999
(.((	chrX:48772384-48772635(-)$1	1	18	22	11.9999
((((	chr9:111853083-111853392(-)$1	1	188	192	11.9999
((((	chr11:65089223-65089505(+)$1	1	5	9	11.9999
(((.	chr2:145187345-145187640(-)$1	1	74	78	11.9999
.)))	chr19:14523511-14523750(-)$1	1	108	112	11.9999
(..(	chr7:5036757-5037016(+)$1	1	22	26	11.9999
((..	chr6:32084226-32084502(-)$1	1	56	60	11.9999
(((.	chrX:153688862-153689097(+)$1	1	9	13	11.9999
((((	chr19:18391408-18391623(-)$1	1	11	15	11.9999
..((	chr10:45923974-45924231(+)$1	1	29	33	11.9999
)).)	chr22:49987675-49987921(-)$1	1	55	59	11.9999
....	chr19:5080146-5080400(+)$1	1	217	221	11.9999
((((	chr12:122626995-122627238(+)$1	1	2	6	11.9999
)).)	chr2:47630250-47630490(+)$1	1	58	62	11.9999
)).)	chr17:54968929-54969202(-)$1	1	57	61	11.9999
.((.	chr7:102789262-102789520(-)$1	1	87	91	11.9999
))((	chr1:228582686-228582939(-)$1	1	41	45	11.9999
(.((	chr1:24086061-24086372(+)$1	1	38	42	11.9999
(.((	chr7:150934500-150934738(+)$1	1	2	6	11.9999
.)))	chr16:53190325-53190578(+)$1	1	171	175	11.9999
(((.	chr16:89661762-89661975(+)$1	1	150	154	11.9999
....	chr21:34922513-34922738(+)$1	1	98	102	11.9999
)..)	chr4:74123839-74124087(-)$1	1	208	212	11.9999
((((	chr1:110527416-110527629(+)$1	1	13	17	11.9999
((((	chr1:11850334-11850603(-)$1	1	23	27	11.9999
(...	chr15:70389691-70389962(-)$1	1	87	91	11.9999
).))	chr9:101552521-101552795(-)$1	1	74	78	11.9999

#PSSM
C : 0.97	c : 0.02	
A : 0.97	a : 0.02	
G : 0.98	g : 0.01	
G : 0.98	g : 0.01	

#score	959.9999999999994
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_transcript_m3_run1.nuc.txt

#NT
uucu	chr6:89662421-89662677(-)$1	256	102	106	12.0000
uucu	chr16:47626022-47626259(+)$1	237	46	50	12.0000
uucu	chr2:148723034-148723252(-)$1	218	12	16	12.0000
UUCU	chr17:74327817-74328068(-)$1	251	12	16	12.0000
uucu	chr2:225388633-225388900(-)$1	267	10	14	12.0000
uucu	chr7:34592366-34592622(-)$1	256	186	190	12.0000
uucu	chr11:74684709-74684957(+)$1	248	1	5	12.0000
uucu	chr1:91469828-91470100(-)$1	272	12	16	12.0000
uucu	chr20:47598424-47598706(+)$1	282	11	15	12.0000
uucu	chr9:112150232-112150495(-)$1	263	19	23	12.0000
uucu	chr12:26643225-26643474(-)$1	249	13	17	12.0000
uucu	chr8:97702766-97703037(+)$1	271	38	42	12.0000
uucu	chr2:171943892-171944132(-)$1	240	52	56	12.0000
UUCU	chr2:17724168-17724408(+)$1	240	36	40	12.0000
uucu	chr2:173441416-173441683(+)$1	267	8	12	12.0000
uucu	chr19:40585928-40586155(-)$1	227	15	19	12.0000
UUCU	chr3:42075511-42075752(+)$1	241	100	104	12.0000
uucu	chr4:452003-452280(-)$1	277	97	101	12.0000
uucu	chr14:37790724-37790977(+)$1	253	0	4	12.0000
uucu	chr10:101171805-101172068(-)$1	263	68	72	12.0000
uucu	chr13:28860480-28860733(+)$1	253	103	107	12.0000
uucu	chr7:131022301-131022520(+)$1	219	24	28	12.0000
UUCU	chr7:22325285-22325543(-)$1	258	8	12	12.0000
uucu	chr3:145818106-145818400(-)$1	294	1	5	12.0000
uucu	chr1:207948535-207948801(+)$1	266	12	16	12.0000
uucu	chr2:242214619-242214870(-)$1	251	14	18	12.0000
uucu	chr14:35715131-35715382(+)$1	251	32	36	12.0000
uucu	chr14:31093745-31094038(+)$1	293	65	69	12.0000
uucu	chr6:159033022-159033275(+)$1	253	199	203	12.0000
uucu	chr2:204347945-204348223(-)$1	278	11	15	12.0000
uucu	chr9:111873069-111873317(-)$1	248	1	5	12.0000
uucu	chr12:11112518-11112747(-)$1	229	185	189	12.0000
uucu	chr2:62960525-62960796(+)$1	271	3	7	12.0000
UUCU	chr10:35776138-35776444(+)$1	306	35	39	12.0000
uucu	chr4:66870018-66870310(+)$1	292	23	27	12.0000
uucu	chr4:66870955-66871178(+)$1	223	16	20	12.0000
uucu	chr6:52375480-52375730(-)$1	250	50	54	12.0000
UUCU	chr7:32677908-32678157(-)$1	249	51	55	12.0000
uucu	chrY:2726530-2726776(+)$1	246	45	49	12.0000
UUCU	chr11:17970686-17970963(-)$1	277	9	13	12.0000
UUCU	chr1:120259183-120259469(+)$1	286	105	109	12.0000
uucu	chr13:41462156-41462433(-)$1	277	2	6	12.0000
UUCU	chr9:116825794-116826032(-)$1	238	93	97	12.0000
UUCU	chr11:116735030-116735364(-)$1	334	30	34	12.0000
UUCU	chr11:65839912-65840169(+)$1	257	101	105	12.0000
UUCU	chr3:157845789-157846079(+)$1	290	17	21	12.0000
UUCU	chr9:111810336-111810594(-)$1	258	35	39	12.0000
UUCU	chr20:8213384-8213660(+)$1	276	21	25	12.0000
uucu	chr8:121797755-121798003(-)$1	248	169	173	12.0000
uucu	chr11:86881428-86881718(+)$1	290	48	52	12.0000
uucu	chr2:231194895-231195185(+)$1	290	73	77	12.0000
UUCU	chr20:20463456-20463722(-)$1	266	178	182	12.0000
uucu	chr13:51110291-51110547(+)$1	256	7	11	12.0000
UUCU	chr17:74326875-74327130(-)$1	255	16	20	12.0000
UUCU	chr7:139461138-139461393(-)$1	255	26	30	12.0000
uucu	chr13:28780986-28781242(+)$1	256	85	89	12.0000
UUCU	chr14:69361007-69361271(-)$1	264	54	58	12.0000
uucu	chr17:28842519-28842745(+)$1	226	1	5	12.0000
uucu	chr22:29374733-29374995(+)$1	262	1	5	12.0000
UUCU	chr7:91748232-91748460(-)$1	228	52	56	12.0000
uucu	chr6:24192239-24192496(-)$1	257	82	86	12.0000
uucu	chr20:8787441-8787712(+)$1	271	3	7	12.0000
UUCU	chr16:52566530-52566808(-)$1	278	14	18	12.0000
uucu	chr13:51141352-51141615(+)$1	263	4	8	12.0000
uucu	chr4:9855053-9855339(-)$1	286	23	27	12.0000
uucu	chr8:121801483-121801710(-)$1	227	44	48	12.0000
uucu	chr18:6003488-6003780(-)$1	292	35	39	12.0000
UUCU	chr3:112735651-112735909(-)$1	258	217	221	12.0000
uucu	chr4:2000126-2000367(-)$1	241	36	40	12.0000
UUCU	chr10:694966-695229(-)$1	263	36	40	12.0000
uucu	chr7:91838640-91838883(-)$1	243	83	87	12.0000
uucu	chr2:58462565-58462802(-)$1	237	12	16	12.0000
uucu	chr7:29284223-29284453(+)$1	230	133	137	12.0000
uucu	chr2:223771095-223771343(+)$1	248	149	153	12.0000
uucu	chr8:28917630-28917909(+)$1	279	107	111	12.0000
UUCU	chr2:201174858-201175141(+)$1	283	73	77	12.0000
UUCU	chr10:7847222-7847483(+)$1	261	13	17	12.0000
UUCU	chr10:693923-694180(-)$1	257	20	24	12.0000
uucu	chr10:77682520-77682790(+)$1	270	11	15	12.0000
uucu	chr2:149475591-149475853(+)$1	262	51	55	12.0000
UUCU	chr5:78095167-78095419(-)$1	252	205	209	12.0000
UUCU	chr10:693510-693759(-)$1	249	2	6	12.0000
uucu	chr2:62980182-62980436(+)$1	254	36	40	12.0000

#otherMatches

#Struct PSSM
&&&&	chr11:70596984-70597242(-)$1	258	13	17	12.0000
qqqq	chr6:89662421-89662677(-)$1	256	102	106	12.0000
c[cc	chr16:47626022-47626259(+)$1	237	46	50	12.0000
fppp	chr2:148723034-148723252(-)$1	218	12	16	12.0000
dmmm	chr17:74327817-74328068(-)$1	251	12	16	12.0000
::::	chr2:225388633-225388900(-)$1	267	10	14	12.0000
hhhh	chr7:34592366-34592622(-)$1	256	186	190	12.0000
::::	chr11:74684709-74684957(+)$1	248	1	5	12.0000
e[ff	chr1:91469828-91470100(-)$1	272	12	16	12.0000
c[cc	chr20:47598424-47598706(+)$1	282	11	15	12.0000
EEEE	chr9:112150232-112150495(-)$1	263	19	23	12.0000
pppp	chr12:26643225-26643474(-)$1	249	13	17	12.0000
dddh	chr8:97702766-97703037(+)$1	271	38	42	12.0000
##dd	chr2:171943892-171944132(-)$1	240	52	56	12.0000
cddd	chr2:17724168-17724408(+)$1	240	36	40	12.0000
eeee	chr2:173441416-173441683(+)$1	267	8	12	12.0000
::::	chr19:40585928-40586155(-)$1	227	15	19	12.0000
vvvv	chr3:42075511-42075752(+)$1	241	100	104	12.0000
gggg	chr4:452003-452280(-)$1	277	97	101	12.0000
:FFF	chr14:37790724-37790977(+)$1	253	0	4	12.0000
ffee	chr10:101171805-101172068(-)$1	263	68	72	12.0000
7777	chr13:28860480-28860733(+)$1	253	103	107	12.0000
f)))	chr7:131022301-131022520(+)$1	219	24	28	12.0000
D:::	chr7:22325285-22325543(-)$1	258	8	12	12.0000
::::	chr3:145818106-145818400(-)$1	294	1	5	12.0000
nnne	chr1:207948535-207948801(+)$1	266	12	16	12.0000
f!!d	chr2:242214619-242214870(-)$1	251	14	18	12.0000
hhbb	chr14:35715131-35715382(+)$1	251	32	36	12.0000
::::	chr14:31093745-31094038(+)$1	293	65	69	12.0000
"fff	chr6:159033022-159033275(+)$1	253	199	203	12.0000
::::	chr2:204347945-204348223(-)$1	278	11	15	12.0000
::::	chr9:111873069-111873317(-)$1	248	1	5	12.0000
$$$c	chr12:11112518-11112747(-)$1	229	185	189	12.0000
!!bb	chr2:62960525-62960796(+)$1	271	3	7	12.0000
d444	chr10:35776138-35776444(+)$1	306	35	39	12.0000
fooo	chr4:66870018-66870310(+)$1	292	23	27	12.0000
LLDD	chr4:66870955-66871178(+)$1	223	16	20	12.0000
nccc	chr6:52375480-52375730(-)$1	250	50	54	12.0000
F:::	chr7:32677908-32678157(-)$1	249	51	55	12.0000
oooo	chrY:2726530-2726776(+)$1	246	45	49	12.0000
iiii	chr11:17970686-17970963(-)$1	277	9	13	12.0000
dd]b	chr1:120259183-120259469(+)$1	286	105	109	12.0000
EEEE	chr13:41462156-41462433(-)$1	277	2	6	12.0000
[ggg	chr9:116825794-116826032(-)$1	238	93	97	12.0000
DDDK	chr11:116735030-116735364(-)$1	334	30	34	12.0000
rrrr	chr11:65839912-65840169(+)$1	257	101	105	12.0000
!!aq	chr3:157845789-157846079(+)$1	290	17	21	12.0000
fffB	chr9:111810336-111810594(-)$1	258	35	39	12.0000
{BBD	chr20:8213384-8213660(+)$1	276	21	25	12.0000
hhh]	chr8:121797755-121798003(-)$1	248	169	173	12.0000
::::	chr11:86881428-86881718(+)$1	290	48	52	12.0000
ELLL	chr2:231194895-231195185(+)$1	290	73	77	12.0000
gggg	chr20:20463456-20463722(-)$1	266	178	182	12.0000
dddq	chr13:51110291-51110547(+)$1	256	7	11	12.0000
[ddd	chr17:74326875-74327130(-)$1	255	16	20	12.0000
dddd	chr7:139461138-139461393(-)$1	255	26	30	12.0000
::::	chr13:28780986-28781242(+)$1	256	85	89	12.0000
mmff	chr14:69361007-69361271(-)$1	264	54	58	12.0000
::::	chr17:28842519-28842745(+)$1	226	1	5	12.0000
::::	chr22:29374733-29374995(+)$1	262	1	5	12.0000
elll	chr7:91748232-91748460(-)$1	228	52	56	12.0000
neee	chr6:24192239-24192496(-)$1	257	82	86	12.0000
EE{E	chr20:8787441-8787712(+)$1	271	3	7	12.0000
ee]b	chr16:52566530-52566808(-)$1	278	14	18	12.0000
DDD:	chr13:51141352-51141615(+)$1	263	4	8	12.0000
KKDD	chr4:9855053-9855339(-)$1	286	23	27	12.0000
:ccc	chr8:121801483-121801710(-)$1	227	44	48	12.0000
:fff	chr18:6003488-6003780(-)$1	292	35	39	12.0000
@@@@	chr3:112735651-112735909(-)$1	258	217	221	12.0000
::::	chr4:2000126-2000367(-)$1	241	36	40	12.0000
ddd[	chr10:694966-695229(-)$1	263	36	40	12.0000
eee4	chr7:91838640-91838883(-)$1	243	83	87	12.0000
oooo	chr2:58462565-58462802(-)$1	237	12	16	12.0000
::::	chr7:29284223-29284453(+)$1	230	133	137	12.0000
ccmm	chr2:223771095-223771343(+)$1	248	149	153	12.0000
33bb	chr8:28917630-28917909(+)$1	279	107	111	12.0000
::::	chr2:201174858-201175141(+)$1	283	73	77	12.0000
eeee	chr10:7847222-7847483(+)$1	261	13	17	12.0000
::::	chr10:693923-694180(-)$1	257	20	24	12.0000
CLLL	chr10:77682520-77682790(+)$1	270	11	15	12.0000
eeee	chr2:149475591-149475853(+)$1	262	51	55	12.0000
ffff	chr5:78095167-78095419(-)$1	252	205	209	12.0000
::::	chr10:693510-693759(-)$1	249	2	6	12.0000
pppp	chr2:62980182-62980436(+)$1	254	36	40	12.0000

#DB
....	chr11:70596984-70597242(-)$1	1	13	17	12.0000
....	chr6:89662421-89662677(-)$1	1	102	106	12.0000
(.((	chr16:47626022-47626259(+)$1	1	46	50	12.0000
(...	chr2:148723034-148723252(-)$1	1	12	16	12.0000
(...	chr17:74327817-74328068(-)$1	1	12	16	12.0000
....	chr2:225388633-225388900(-)$1	1	10	14	12.0000
))))	chr7:34592366-34592622(-)$1	1	186	190	12.0000
....	chr11:74684709-74684957(+)$1	1	1	5	12.0000
(.((	chr1:91469828-91470100(-)$1	1	12	16	12.0000
(.((	chr20:47598424-47598706(+)$1	1	11	15	12.0000
((((	chr9:112150232-112150495(-)$1	1	19	23	12.0000
....	chr12:26643225-26643474(-)$1	1	13	17	12.0000
))))	chr8:97702766-97703037(+)$1	1	38	42	12.0000
..((	chr2:171943892-171944132(-)$1	1	52	56	12.0000
))))	chr2:17724168-17724408(+)$1	1	36	40	12.0000
((((	chr2:173441416-173441683(+)$1	1	8	12	12.0000
....	chr19:40585928-40586155(-)$1	1	15	19	12.0000
....	chr3:42075511-42075752(+)$1	1	100	104	12.0000
))))	chr4:452003-452280(-)$1	1	97	101	12.0000
.(((	chr14:37790724-37790977(+)$1	1	0	4	12.0000
))))	chr10:101171805-101172068(-)$1	1	68	72	12.0000
....	chr13:28860480-28860733(+)$1	1	103	107	12.0000
(...	chr7:131022301-131022520(+)$1	1	24	28	12.0000
(...	chr7:22325285-22325543(-)$1	1	8	12	12.0000
....	chr3:145818106-145818400(-)$1	1	1	5	12.0000
...)	chr1:207948535-207948801(+)$1	1	12	16	12.0000
(..(	chr2:242214619-242214870(-)$1	1	14	18	12.0000
((((	chr14:35715131-35715382(+)$1	1	32	36	12.0000
....	chr14:31093745-31094038(+)$1	1	65	69	12.0000
.(((	chr6:159033022-159033275(+)$1	1	199	203	12.0000
....	chr2:204347945-204348223(-)$1	1	11	15	12.0000
....	chr9:111873069-111873317(-)$1	1	1	5	12.0000
...(	chr12:11112518-11112747(-)$1	1	185	189	12.0000
..((	chr2:62960525-62960796(+)$1	1	3	7	12.0000
)...	chr10:35776138-35776444(+)$1	1	35	39	12.0000
(...	chr4:66870018-66870310(+)$1	1	23	27	12.0000
..((	chr4:66870955-66871178(+)$1	1	16	20	12.0000
.)))	chr6:52375480-52375730(-)$1	1	50	54	12.0000
(...	chr7:32677908-32678157(-)$1	1	51	55	12.0000
....	chrY:2726530-2726776(+)$1	1	45	49	12.0000
((((	chr11:17970686-17970963(-)$1	1	9	13	12.0000
)).)	chr1:120259183-120259469(+)$1	1	105	109	12.0000
((((	chr13:41462156-41462433(-)$1	1	2	6	12.0000
.(((	chr9:116825794-116826032(-)$1	1	93	97	12.0000
(((.	chr11:116735030-116735364(-)$1	1	30	34	12.0000
....	chr11:65839912-65840169(+)$1	1	101	105	12.0000
..(.	chr3:157845789-157846079(+)$1	1	17	21	12.0000
)))(	chr9:111810336-111810594(-)$1	1	35	39	12.0000
.(((	chr20:8213384-8213660(+)$1	1	21	25	12.0000
))).	chr8:121797755-121798003(-)$1	1	169	173	12.0000
....	chr11:86881428-86881718(+)$1	1	48	52	12.0000
(...	chr2:231194895-231195185(+)$1	1	73	77	12.0000
))))	chr20:20463456-20463722(-)$1	1	178	182	12.0000
(((.	chr13:51110291-51110547(+)$1	1	7	11	12.0000
.(((	chr17:74326875-74327130(-)$1	1	16	20	12.0000
))))	chr7:139461138-139461393(-)$1	1	26	30	12.0000
....	chr13:28780986-28781242(+)$1	1	85	89	12.0000
..))	chr14:69361007-69361271(-)$1	1	54	58	12.0000
....	chr17:28842519-28842745(+)$1	1	1	5	12.0000
....	chr22:29374733-29374995(+)$1	1	1	5	12.0000
(...	chr7:91748232-91748460(-)$1	1	52	56	12.0000
.)))	chr6:24192239-24192496(-)$1	1	82	86	12.0000
((.(	chr20:8787441-8787712(+)$1	1	3	7	12.0000
)).)	chr16:52566530-52566808(-)$1	1	14	18	12.0000
(((.	chr13:51141352-51141615(+)$1	1	4	8	12.0000
..((	chr4:9855053-9855339(-)$1	1	23	27	12.0000
.(((	chr8:121801483-121801710(-)$1	1	44	48	12.0000
.(((	chr18:6003488-6003780(-)$1	1	35	39	12.0000
....	chr3:112735651-112735909(-)$1	1	217	221	12.0000
....	chr4:2000126-2000367(-)$1	1	36	40	12.0000
(((.	chr10:694966-695229(-)$1	1	36	40	12.0000
))).	chr7:91838640-91838883(-)$1	1	83	87	12.0000
....	chr2:58462565-58462802(-)$1	1	12	16	12.0000
....	chr7:29284223-29284453(+)$1	1	133	137	12.0000
((..	chr2:223771095-223771343(+)$1	1	149	153	12.0000
..))	chr8:28917630-28917909(+)$1	1	107	111	12.0000
....	chr2:201174858-201175141(+)$1	1	73	77	12.0000
((((	chr10:7847222-7847483(+)$1	1	13	17	12.0000
....	chr10:693923-694180(-)$1	1	20	24	12.0000
(...	chr10:77682520-77682790(+)$1	1	11	15	12.0000
))))	chr2:149475591-149475853(+)$1	1	51	55	12.0000
)(((	chr5:78095167-78095419(-)$1	1	205	209	12.0000
....	chr10:693510-693759(-)$1	1	2	6	12.0000
....	chr2:62980182-62980436(+)$1	1	36	40	12.0000

#PSSM
u : 0.67	U : 0.32	
u : 0.67	U : 0.32	
c : 0.67	C : 0.32	
u : 0.67	U : 0.32	

#score	1008.0
#seq	84
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_UTR_m2_run1.nuc.txt

#NT

#otherMatches

#Struct PSSM
[cccqqqqqqqqccc]bbbb]ccc:::::::::::CCC{DDDD{BBKKA{EEEEELLLHHHHHHHH:iiiiiiiiiddddnnnnndddd]iiiiiiiiiddddllldddd:ccc"""eeeeellleeeee4444cccgggggggssssssssssggggggg:bb[bboooooobb]bbHHHHHHHH////////EEEEEAYYBB}DDDDCCCddddcccmmmmccc]ddddccc!!dddd"""a[cccqqqqqqqqccc]a333	chr12:8024784-8025096(-)$1	312	26	290	792.0000

#DB
.(((........))).)))).)))...........(((.((((.((..(.(((((...((((((((.(((((((((((((.....)))).)))))))))((((...)))).(((...(((((...)))))....)))(((((((..........))))))).((.((......)).))))))))))........))))))..)).)))))))(((((((....))).))))(((..((((...(.(((........))).)...	chr12:8024784-8025096(-)$1	1	26	290	792.0000

#PSSM
u : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	

#score	792.0
#seq	1
#width	264
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_transcript_m3_run2.nuc.txt

#NT
CUCA	chr11:61544151-61544424(+)$1	273	136	140	11.9999
CUCA	chr20:60856171-60856402(+)$1	231	145	149	11.9999
CUCA	chr22:26270157-26270398(+)$1	241	68	72	11.9999
CUCA	chr1:228334283-228334529(+)$1	246	81	85	11.9999
CUCA	chr12:132632608-132632848(+)$1	240	32	36	11.9999
CUCA	chr2:53927510-53927779(-)$1	269	240	244	11.9999
CUCA	chr19:40719011-40719290(+)$1	279	71	75	11.9999
CUCA	chr1:22083047-22083299(-)$1	252	106	110	11.9999
CUCA	chr5:176923354-176923591(-)$1	237	42	46	11.9999
CUCA	chr5:138994062-138994313(+)$1	251	185	189	11.9999
CUCA	chr1:19447767-19447991(-)$1	224	29	33	11.9999
cuca	chr16:74353109-74353427(-)$1	318	256	260	11.9999
CUCA	chr16:1502529-1502770(-)$1	241	145	149	11.9999
CUCA	chr19:51842261-51842519(-)$1	258	148	152	11.9999
CUCA	chr19:3620105-3620370(-)$1	265	79	83	11.9999
CUCA	chr6:135300260-135300528(-)$1	268	111	115	11.9999
CUCA	chr11:61077756-61077996(-)$1	240	52	56	11.9999
CUCA	chr17:5444903-5445147(-)$1	244	93	97	11.9999
cuca	chr2:216209403-216209678(+)$1	275	0	4	11.9999
CUCA	chr12:77203386-77203636(+)$1	250	201	205	11.9999
CUCA	chr16:113664-113939(-)$1	275	14	18	11.9999
CUCA	chr6:17837637-17837912(-)$1	275	192	196	11.9999
CUCA	chr1:203020744-203021027(+)$1	283	106	110	11.9999
CUCA	chr9:140081742-140082023(-)$1	281	77	81	11.9999
CUCA	chr2:86669031-86669303(+)$1	272	145	149	11.9999
CUCA	chr7:107052874-107053116(-)$1	242	48	52	11.9999
CUCA	chr7:1533639-1533879(-)$1	240	181	185	11.9999
CUCA	chr2:218700778-218701052(-)$1	274	85	89	11.9999
CUCA	chr17:40146817-40147100(-)$1	283	236	240	11.9999
CUCA	chr19:15480846-15481096(-)$1	250	72	76	11.9999
CUCA	chr1:145439569-145439797(+)$1	228	89	93	11.9999
CUCA	chr6:117890686-117891006(-)$1	320	134	138	11.9999
CUCA	chr17:36863887-36864153(+)$1	266	184	188	11.9999
CUCA	chr2:97531055-97531284(-)$1	229	16	20	11.9999
CUCA	chr11:14539381-14539634(-)$1	253	25	29	11.9999
CUCA	chr6:17780994-17781248(-)$1	254	89	93	11.9999
CUCA	chr22:22279842-22280094(-)$1	252	99	103	11.9999
CUCA	chr11:77524613-77524874(-)$1	261	95	99	11.9999
CUCA	chr17:40280682-40280921(-)$1	239	111	115	11.9999
CUCA	chr5:179043937-179044221(-)$1	284	100	104	11.9999
CUCA	chr1:154148595-154148825(-)$1	230	165	169	11.9999
CUCA	chr14:104123782-104124056(+)$1	274	95	99	11.9999
CUCA	chr19:2199083-2199327(+)$1	244	202	206	11.9999
CUCA	chr21:47958403-47958667(+)$1	264	40	44	11.9999
CUCA	chr7:157009416-157009643(+)$1	227	83	87	11.9999
CUCA	chr12:133129967-133130252(+)$1	285	155	159	11.9999
CUCA	chr19:4446245-4446521(-)$1	276	20	24	11.9999
cuca	chr19:1808190-1808426(-)$1	236	185	189	11.9999
CUCA	chr9:126433469-126433731(-)$1	262	39	43	11.9999
CUCA	chr15:74912592-74912861(+)$1	269	14	18	11.9999
CUCA	chr16:2143754-2144024(-)$1	270	72	76	11.9999
CUCA	chr17:42960907-42961157(-)$1	250	11	15	11.9999
CUCA	chr4:39457835-39458075(-)$1	240	63	67	11.9999
CUCA	chr11:65049052-65049301(+)$1	249	18	22	11.9999
CUCA	chr9:135798631-135798865(-)$1	234	7	11	11.9999
CUCA	chr22:46752278-46752523(+)$1	245	235	239	11.9999
CUCA	chr1:1158054-1158300(-)$1	246	49	53	11.9999
CUCA	chr12:53897998-53898261(+)$1	263	120	124	11.9999
CUCA	chr10:99509965-99510224(+)$1	259	71	75	11.9999
CUCA	chr7:6066157-6066403(-)$1	246	204	208	11.9999
CUCA	chr16:4924108-4924347(+)$1	239	37	41	11.9999
CUCA	chr1:153913375-153913653(-)$1	278	199	203	11.9999
CUCA	chr14:24112210-24112523(+)$1	313	123	127	11.9999
CUCA	chr11:46567166-46567436(-)$1	270	177	181	11.9999
CUCA	chr9:34649001-34649261(+)$1	260	133	137	11.9999
CUCA	chr11:72532706-72532996(+)$1	290	117	121	11.9999
CUCA	chr3:183962807-183963083(-)$1	276	42	46	11.9999
CUCA	chr12:112589821-112590086(+)$1	265	53	57	11.9999

#otherMatches

#Struct PSSM
mmmm	chr7:97935633-97935859(-)$1	226	211	215	11.9999
bmmm	chr11:61544151-61544424(+)$1	273	136	140	11.9999
eeeq	chr20:60856171-60856402(+)$1	231	145	149	11.9999
a[ff	chr22:26270157-26270398(+)$1	241	68	72	11.9999
llhh	chr1:228334283-228334529(+)$1	246	81	85	11.9999
ffff	chr12:132632608-132632848(+)$1	240	32	36	11.9999
}DDD	chr2:53927510-53927779(-)$1	269	240	244	11.9999
d777	chr19:40719011-40719290(+)$1	279	71	75	11.9999
====	chr1:22083047-22083299(-)$1	252	106	110	11.9999
++++	chr5:176923354-176923591(-)$1	237	42	46	11.9999
GGYY	chr5:138994062-138994313(+)$1	251	185	189	11.9999
::ff	chr1:19447767-19447991(-)$1	224	29	33	11.9999
FFFF	chr16:74353109-74353427(-)$1	318	256	260	11.9999
ccll	chr16:1502529-1502770(-)$1	241	145	149	11.9999
blll	chr19:51842261-51842519(-)$1	258	148	152	11.9999
c"""	chr19:3620105-3620370(-)$1	265	79	83	11.9999
HHHH	chr6:135300260-135300528(-)$1	268	111	115	11.9999
ffff	chr11:61077756-61077996(-)$1	240	52	56	11.9999
bb[d	chr17:5444903-5445147(-)$1	244	93	97	11.9999
::::	chr2:216209403-216209678(+)$1	275	0	4	11.9999
c:ee	chr12:77203386-77203636(+)$1	250	201	205	11.9999
EEE:	chr16:113664-113939(-)$1	275	14	18	11.9999
booo	chr6:17837637-17837912(-)$1	275	192	196	11.9999
gddd	chr1:203020744-203021027(+)$1	283	106	110	11.9999
dd:g	chr9:140081742-140082023(-)$1	281	77	81	11.9999
2ggg	chr2:86669031-86669303(+)$1	272	145	149	11.9999
ddll	chr7:107052874-107053116(-)$1	242	48	52	11.9999
ccc]	chr7:1533639-1533879(-)$1	240	181	185	11.9999
]bbg	chr2:218700778-218701052(-)$1	274	85	89	11.9999
fff:	chr17:40146817-40147100(-)$1	283	236	240	11.9999
bnnn	chr19:15480846-15481096(-)$1	250	72	76	11.9999
dddd	chr1:145439569-145439797(+)$1	228	89	93	11.9999
c]dd	chr6:117890686-117891006(-)$1	320	134	138	11.9999
dddo	chr17:36863887-36864153(+)$1	266	184	188	11.9999
fffu	chr2:97531055-97531284(-)$1	229	16	20	11.9999
HH::	chr11:14539381-14539634(-)$1	253	25	29	11.9999
DDKK	chr6:17780994-17781248(-)$1	254	89	93	11.9999
ffff	chr22:22279842-22280094(-)$1	252	99	103	11.9999
cc[c	chr11:77524613-77524874(-)$1	261	95	99	11.9999
dddd	chr17:40280682-40280921(-)$1	239	111	115	11.9999
ddoo	chr5:179043937-179044221(-)$1	284	100	104	11.9999
cbbe	chr1:154148595-154148825(-)$1	230	165	169	11.9999
Dfff	chr14:104123782-104124056(+)$1	274	95	99	11.9999
BBB}	chr19:2199083-2199327(+)$1	244	202	206	11.9999
EEEE	chr21:47958403-47958667(+)$1	264	40	44	11.9999
mmmm	chr7:157009416-157009643(+)$1	227	83	87	11.9999
3bb]	chr12:133129967-133130252(+)$1	285	155	159	11.9999
ddd2	chr19:4446245-4446521(-)$1	276	20	24	11.9999
::::	chr19:1808190-1808426(-)$1	236	185	189	11.9999
gg&&	chr9:126433469-126433731(-)$1	262	39	43	11.9999
gggg	chr15:74912592-74912861(+)$1	269	14	18	11.9999
e::J	chr16:2143754-2144024(-)$1	270	72	76	11.9999
cooo	chr17:42960907-42961157(-)$1	250	11	15	11.9999
A{FF	chr4:39457835-39458075(-)$1	240	63	67	11.9999
::::	chr11:65049052-65049301(+)$1	249	18	22	11.9999
!!cc	chr9:135798631-135798865(-)$1	234	7	11	11.9999
nnnn	chr22:46752278-46752523(+)$1	245	235	239	11.9999
qqa]	chr1:1158054-1158300(-)$1	246	49	53	11.9999
eeqq	chr12:53897998-53898261(+)$1	263	120	124	11.9999
ee::	chr10:99509965-99510224(+)$1	259	71	75	11.9999
GGGG	chr7:6066157-6066403(-)$1	246	204	208	11.9999
ccc:	chr16:4924108-4924347(+)$1	239	37	41	11.9999
fffl	chr1:153913375-153913653(-)$1	278	199	203	11.9999
DDDE	chr14:24112210-24112523(+)$1	313	123	127	11.9999
e!!b	chr11:46567166-46567436(-)$1	270	177	181	11.9999
ggGG	chr9:34649001-34649261(+)$1	260	133	137	11.9999
ccCC	chr11:72532706-72532996(+)$1	290	117	121	11.9999
qqhh	chr3:183962807-183963083(-)$1	276	42	46	11.9999
EEEE	chr12:112589821-112590086(+)$1	265	53	57	11.9999

#DB
....	chr7:97935633-97935859(-)$1	1	211	215	11.9999
(...	chr11:61544151-61544424(+)$1	1	136	140	11.9999
(((.	chr20:60856171-60856402(+)$1	1	145	149	11.9999
(.((	chr22:26270157-26270398(+)$1	1	68	72	11.9999
..))	chr1:228334283-228334529(+)$1	1	81	85	11.9999
((((	chr12:132632608-132632848(+)$1	1	32	36	11.9999
.)))	chr2:53927510-53927779(-)$1	1	240	244	11.9999
)...	chr19:40719011-40719290(+)$1	1	71	75	11.9999
))))	chr1:22083047-22083299(-)$1	1	106	110	11.9999
....	chr5:176923354-176923591(-)$1	1	42	46	11.9999
))..	chr5:138994062-138994313(+)$1	1	185	189	11.9999
..((	chr1:19447767-19447991(-)$1	1	29	33	11.9999
))))	chr16:74353109-74353427(-)$1	1	256	260	11.9999
((..	chr16:1502529-1502770(-)$1	1	145	149	11.9999
(...	chr19:51842261-51842519(-)$1	1	148	152	11.9999
(...	chr19:3620105-3620370(-)$1	1	79	83	11.9999
((((	chr6:135300260-135300528(-)$1	1	111	115	11.9999
((((	chr11:61077756-61077996(-)$1	1	52	56	11.9999
((.(	chr17:5444903-5445147(-)$1	1	93	97	11.9999
....	chr2:216209403-216209678(+)$1	1	0	4	11.9999
).((	chr12:77203386-77203636(+)$1	1	201	205	11.9999
(((.	chr16:113664-113939(-)$1	1	14	18	11.9999
(...	chr6:17837637-17837912(-)$1	1	192	196	11.9999
))))	chr1:203020744-203021027(+)$1	1	106	110	11.9999
)).(	chr9:140081742-140082023(-)$1	1	77	81	11.9999
.)))	chr2:86669031-86669303(+)$1	1	145	149	11.9999
((..	chr7:107052874-107053116(-)$1	1	48	52	11.9999
))).	chr7:1533639-1533879(-)$1	1	181	185	11.9999
.))(	chr2:218700778-218701052(-)$1	1	85	89	11.9999
))).	chr17:40146817-40147100(-)$1	1	236	240	11.9999
(...	chr19:15480846-15481096(-)$1	1	72	76	11.9999
))))	chr1:145439569-145439797(+)$1	1	89	93	11.9999
).))	chr6:117890686-117891006(-)$1	1	134	138	11.9999
(((.	chr17:36863887-36864153(+)$1	1	184	188	11.9999
(((.	chr2:97531055-97531284(-)$1	1	16	20	11.9999
((..	chr11:14539381-14539634(-)$1	1	25	29	11.9999
((..	chr6:17780994-17781248(-)$1	1	89	93	11.9999
((((	chr22:22279842-22280094(-)$1	1	99	103	11.9999
((.(	chr11:77524613-77524874(-)$1	1	95	99	11.9999
((((	chr17:40280682-40280921(-)$1	1	111	115	11.9999
((..	chr5:179043937-179044221(-)$1	1	100	104	11.9999
))))	chr1:154148595-154148825(-)$1	1	165	169	11.9999
((((	chr14:104123782-104124056(+)$1	1	95	99	11.9999
))).	chr19:2199083-2199327(+)$1	1	202	206	11.9999
((((	chr21:47958403-47958667(+)$1	1	40	44	11.9999
....	chr7:157009416-157009643(+)$1	1	83	87	11.9999
.)).	chr12:133129967-133130252(+)$1	1	155	159	11.9999
))).	chr19:4446245-4446521(-)$1	1	20	24	11.9999
....	chr19:1808190-1808426(-)$1	1	185	189	11.9999
((..	chr9:126433469-126433731(-)$1	1	39	43	11.9999
((((	chr15:74912592-74912861(+)$1	1	14	18	11.9999
)..(	chr16:2143754-2144024(-)$1	1	72	76	11.9999
(...	chr17:42960907-42961157(-)$1	1	11	15	11.9999
(.((	chr4:39457835-39458075(-)$1	1	63	67	11.9999
....	chr11:65049052-65049301(+)$1	1	18	22	11.9999
..((	chr9:135798631-135798865(-)$1	1	7	11	11.9999
....	chr22:46752278-46752523(+)$1	1	235	239	11.9999
..).	chr1:1158054-1158300(-)$1	1	49	53	11.9999
((..	chr12:53897998-53898261(+)$1	1	120	124	11.9999
))..	chr10:99509965-99510224(+)$1	1	71	75	11.9999
))))	chr7:6066157-6066403(-)$1	1	204	208	11.9999
))).	chr16:4924108-4924347(+)$1	1	37	41	11.9999
(((.	chr1:153913375-153913653(-)$1	1	199	203	11.9999
((((	chr14:24112210-24112523(+)$1	1	123	127	11.9999
(..(	chr11:46567166-46567436(-)$1	1	177	181	11.9999
))))	chr9:34649001-34649261(+)$1	1	133	137	11.9999
))))	chr11:72532706-72532996(+)$1	1	117	121	11.9999
..))	chr3:183962807-183963083(-)$1	1	42	46	11.9999
((((	chr12:112589821-112590086(+)$1	1	53	57	11.9999

#PSSM
C : 0.95	c : 0.04	
U : 0.95	u : 0.04	
C : 0.95	c : 0.04	
A : 0.95	a : 0.04	

#score	827.9999999999995
#seq	69
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_transcript_m1_run1.nuc.txt

#NT
gaGGAG	chr2:232325327-232325535(-)$1	208	128	134	18.0000
GAGGAG	chr2:160568923-160569213(+)$1	290	56	62	18.0000
GAGGAG	chr9:132596881-132597145(-)$1	264	176	182	18.0000
GAGGAG	chr15:63340673-63341000(+)$1	327	173	179	18.0000
gaggag	chr7:72861493-72861789(-)$1	296	135	141	18.0000
GAGGAG	chr19:49610966-49611245(+)$1	279	233	239	18.0000
GAGGAG	chr2:145146988-145147293(-)$1	305	3	9	18.0000
GAGGAG	chr22:21355800-21356118(-)$1	318	96	102	18.0000
GAGGAG	chr11:65359178-65359435(+)$1	257	96	102	18.0000
GAGGAG	chrX:70683610-70683929(+)$1	319	76	82	18.0000
GAGGAG	chr11:6532406-6532706(+)$1	300	184	190	18.0000
GAGGAG	chr6:43591356-43591596(-)$1	240	194	200	18.0000
gaggag	chr1:109825173-109825454(-)$1	281	184	190	18.0000
GAGGAG	chr16:23690616-23690904(+)$1	288	235	241	18.0000
GAGGAG	chr22:19969396-19969671(-)$1	275	117	123	18.0000
GAGGAG	chr1:245027253-245027528(-)$1	275	51	57	18.0000
GAGGAG	chr16:1511299-1511561(-)$1	262	129	135	18.0000
GAGGAG	chr1:12082856-12083099(+)$1	243	51	57	18.0000
GAGGAG	chr17:58469127-58469413(-)$1	286	44	50	18.0000
GAGGAG	chr11:82868141-82868416(+)$1	275	260	266	18.0000
GAGGAG	chr11:581411-581715(+)$1	304	230	236	18.0000
GAGGAG	chr3:9862174-9862495(+)$1	321	135	141	18.0000
GAGGAG	chr7:150761190-150761464(+)$1	274	188	194	18.0000
GAGGAG	chr19:34882266-34882504(+)$1	238	25	31	18.0000
GAGGAG	chr17:78246983-78247298(+)$1	315	181	187	18.0000
gaggag	chrX:64737798-64738078(-)$1	280	22	28	18.0000
GAGGAG	chr1:22084141-22084377(-)$1	236	209	215	18.0000
gaggag	chr4:174253120-174253329(-)$1	209	36	42	18.0000
GAGGAG	chr7:155559163-155559478(+)$1	315	19	25	18.0000
GAGGAG	chr16:2587936-2588254(+)$1	318	107	113	18.0000
gaggag	chr11:35684841-35685226(+)$1	385	184	190	18.0000
gAGGAG	chr6:146135614-146135971(-)$1	357	44	50	18.0000
GAGGAG	chr1:36216752-36217042(-)$1	290	54	60	18.0000
gaggag	chr4:174253084-174253299(-)$1	215	6	12	18.0000
GAGGAG	chr8:145161185-145161458(+)$1	273	147	153	18.0000
GAGGAG	chrX:64737878-64738153(-)$1	275	25	31	18.0000
GAGGAG	chr6:47445688-47445965(+)$1	277	68	74	18.0000
GAGGAG	chr20:62648049-62648292(+)$1	243	104	110	18.0000
gaggag	chr16:89463425-89463722(-)$1	297	135	141	18.0000
GAGGAG	chr12:122196483-122196804(+)$1	321	17	23	18.0000
gaggag	chr16:74353128-74353442(-)$1	314	55	61	18.0000
GAGGAG	chr17:57970529-57970827(+)$1	298	148	154	18.0000
GAGGAG	chr14:102493921-102494186(+)$1	265	127	133	18.0000
gaggag	chr1:235377138-235377445(-)$1	307	150	156	18.0000
GAGGAG	chr11:93517727-93518064(+)$1	337	117	123	18.0000
gaggag	chr8:95541262-95541525(-)$1	263	173	179	18.0000
gaggag	chr1:160209727-160210092(-)$1	365	192	198	18.0000
gaggag	chr9:100777577-100777845(+)$1	268	67	73	18.0000
GAGGAG	chr17:46058528-46058794(+)$1	266	103	109	18.0000

#otherMatches

#Struct PSSM
gggggg	chr16:15095530-15095806(+)$1	276	163	169	18.0000
[dddd'	chr2:232325327-232325535(-)$1	208	128	134	18.0000
hha[bb	chr2:160568923-160569213(+)$1	290	56	62	18.0000
gggggg	chr9:132596881-132597145(-)$1	264	176	182	18.0000
mmmmdd	chr15:63340673-63341000(+)$1	327	173	179	18.0000
GGGGGG	chr7:72861493-72861789(-)$1	296	135	141	18.0000
::ffff	chr19:49610966-49611245(+)$1	279	233	239	18.0000
::::::	chr2:145146988-145147293(-)$1	305	3	9	18.0000
eeeeee	chr22:21355800-21356118(-)$1	318	96	102	18.0000
Ibb[cc	chr11:65359178-65359435(+)$1	257	96	102	18.0000
55555h	chrX:70683610-70683929(+)$1	319	76	82	18.0000
ccdddd	chr11:6532406-6532706(+)$1	300	184	190	18.0000
dd::::	chr6:43591356-43591596(-)$1	240	194	200	18.0000
!bb!!c	chr1:109825173-109825454(-)$1	281	184	190	18.0000
ZZA}CC	chr16:23690616-23690904(+)$1	288	235	241	18.0000
d]bb::	chr22:19969396-19969671(-)$1	275	117	123	18.0000
B::::d	chr1:245027253-245027528(-)$1	275	51	57	18.0000
mmccci	chr16:1511299-1511561(-)$1	262	129	135	18.0000
dddd[b	chr1:12082856-12083099(+)$1	243	51	57	18.0000
qqqqqq	chr17:58469127-58469413(-)$1	286	44	50	18.0000
E}AYYA	chr11:82868141-82868416(+)$1	275	260	266	18.0000
oocccb	chr11:581411-581715(+)$1	304	230	236	18.0000
ddd!!b	chr3:9862174-9862495(+)$1	321	135	141	18.0000
h[a###	chr7:150761190-150761464(+)$1	274	188	194	18.0000
ggtttt	chr19:34882266-34882504(+)$1	238	25	31	18.0000
666fff	chr17:78246983-78247298(+)$1	315	181	187	18.0000
HHHH{D	chrX:64737798-64738078(-)$1	280	22	28	18.0000
DDDD}H	chr1:22084141-22084377(-)$1	236	209	215	18.0000
rrbb::	chr4:174253120-174253329(-)$1	209	36	42	18.0000
:ccc[b	chr7:155559163-155559478(+)$1	315	19	25	18.0000
bbbb22	chr16:2587936-2588254(+)$1	318	107	113	18.0000
B:::::	chr11:35684841-35685226(+)$1	385	184	190	18.0000
[bb!!d	chr6:146135614-146135971(-)$1	357	44	50	18.0000
BB{DDD	chr1:36216752-36217042(-)$1	290	54	60	18.0000
::::::	chr4:174253084-174253299(-)$1	215	6	12	18.0000
E:DDDD	chr8:145161185-145161458(+)$1	273	147	153	18.0000
FFF{DD	chrX:64737878-64738153(-)$1	275	25	31	18.0000
IIIIII	chr6:47445688-47445965(+)$1	277	68	74	18.0000
ffffff	chr20:62648049-62648292(+)$1	243	104	110	18.0000
!!ffff	chr16:89463425-89463722(-)$1	297	135	141	18.0000
qqqqqb	chr12:122196483-122196804(+)$1	321	17	23	18.0000
e22aCC	chr16:74353128-74353442(-)$1	314	55	61	18.0000
a]a::D	chr17:57970529-57970827(+)$1	298	148	154	18.0000
ccceee	chr14:102493921-102494186(+)$1	265	127	133	18.0000
^^^^^e	chr1:235377138-235377445(-)$1	307	150	156	18.0000
nnnnnd	chr11:93517727-93518064(+)$1	337	117	123	18.0000
^^^^^^	chr8:95541262-95541525(-)$1	263	173	179	18.0000
B{EEEE	chr1:160209727-160210092(-)$1	365	192	198	18.0000
d]eeee	chr9:100777577-100777845(+)$1	268	67	73	18.0000
NNHHHH	chr17:46058528-46058794(+)$1	266	103	109	18.0000

#DB
((((((	chr16:15095530-15095806(+)$1	1	163	169	18.0000
.((((.	chr2:232325327-232325535(-)$1	1	128	134	18.0000
(((.((	chr2:160568923-160569213(+)$1	1	56	62	18.0000
((((((	chr9:132596881-132597145(-)$1	1	176	182	18.0000
....))	chr15:63340673-63341000(+)$1	1	173	179	18.0000
))))))	chr7:72861493-72861789(-)$1	1	135	141	18.0000
..((((	chr19:49610966-49611245(+)$1	1	233	239	18.0000
......	chr2:145146988-145147293(-)$1	1	3	9	18.0000
))))))	chr22:21355800-21356118(-)$1	1	96	102	18.0000
(((.((	chr11:65359178-65359435(+)$1	1	96	102	18.0000
.....)	chrX:70683610-70683929(+)$1	1	76	82	18.0000
((((((	chr11:6532406-6532706(+)$1	1	184	190	18.0000
))....	chr6:43591356-43591596(-)$1	1	194	200	18.0000
.((..(	chr1:109825173-109825454(-)$1	1	184	190	18.0000
..).))	chr16:23690616-23690904(+)$1	1	235	241	18.0000
).))..	chr22:19969396-19969671(-)$1	1	117	123	18.0000
(....(	chr1:245027253-245027528(-)$1	1	51	57	18.0000
..)))(	chr16:1511299-1511561(-)$1	1	129	135	18.0000
((((.(	chr1:12082856-12083099(+)$1	1	51	57	18.0000
......	chr17:58469127-58469413(-)$1	1	44	50	18.0000
).)..)	chr11:82868141-82868416(+)$1	1	260	266	18.0000
..))))	chr11:581411-581715(+)$1	1	230	236	18.0000
(((..(	chr3:9862174-9862495(+)$1	1	135	141	18.0000
(.(...	chr7:150761190-150761464(+)$1	1	188	194	18.0000
((....	chr19:34882266-34882504(+)$1	1	25	31	18.0000
...)))	chr17:78246983-78247298(+)$1	1	181	187	18.0000
((((.(	chrX:64737798-64738078(-)$1	1	22	28	18.0000
)))).)	chr1:22084141-22084377(-)$1	1	209	215	18.0000
..))..	chr4:174253120-174253329(-)$1	1	36	42	18.0000
.(((.(	chr7:155559163-155559478(+)$1	1	19	25	18.0000
))))..	chr16:2587936-2588254(+)$1	1	107	113	18.0000
).....	chr11:35684841-35685226(+)$1	1	184	190	18.0000
.((..(	chr6:146135614-146135971(-)$1	1	44	50	18.0000
((.(((	chr1:36216752-36217042(-)$1	1	54	60	18.0000
......	chr4:174253084-174253299(-)$1	1	6	12	18.0000
).((((	chr8:145161185-145161458(+)$1	1	147	153	18.0000
(((.((	chrX:64737878-64738153(-)$1	1	25	31	18.0000
((((((	chr6:47445688-47445965(+)$1	1	68	74	18.0000
))))))	chr20:62648049-62648292(+)$1	1	104	110	18.0000
..((((	chr16:89463425-89463722(-)$1	1	135	141	18.0000
.....)	chr12:122196483-122196804(+)$1	1	17	23	18.0000
)..)((	chr16:74353128-74353442(-)$1	1	55	61	18.0000
).)..)	chr17:57970529-57970827(+)$1	1	148	154	18.0000
)))(((	chr14:102493921-102494186(+)$1	1	127	133	18.0000
.....)	chr1:235377138-235377445(-)$1	1	150	156	18.0000
.....)	chr11:93517727-93518064(+)$1	1	117	123	18.0000
......	chr8:95541262-95541525(-)$1	1	173	179	18.0000
(.((((	chr1:160209727-160210092(-)$1	1	192	198	18.0000
).))))	chr9:100777577-100777845(+)$1	1	67	73	18.0000
..((((	chr17:46058528-46058794(+)$1	1	103	109	18.0000

#PSSM
G : 0.72	g : 0.27	
A : 0.74	a : 0.25	
G : 0.76	g : 0.23	
G : 0.76	g : 0.23	
A : 0.76	a : 0.23	
G : 0.76	g : 0.23	

#score	900.0000000000001
#seq	50
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_CDS_m3_run1.nuc.txt

#NT
CAGG	chr19:39440358-39440630(-)$1	272	41	45	12.0000
CAGG	chr9:136223037-136223273(-)$1	236	95	99	12.0000
cAGG	chr14:23790715-23790923(+)$1	208	90	94	12.0000
CAGG	chr11:93474479-93474757(-)$1	278	189	193	12.0000
CAGG	chr16:28878053-28878296(+)$1	243	92	96	12.0000
CAGG	chrX:53634393-53634662(-)$1	269	53	57	12.0000
CAGG	chr19:2270408-2270664(+)$1	256	80	84	12.0000
CAGG	chr7:5754666-5754923(-)$1	257	66	70	12.0000
CAGG	chr3:51422656-51422976(+)$1	320	138	142	12.0000
CAGG	chr3:122785824-122786159(+)$1	335	121	125	12.0000
CAGG	chr1:156351126-156351365(+)$1	239	222	226	12.0000
CAGG	chr12:56583109-56583445(-)$1	336	0	4	12.0000
CAGG	chr14:24036225-24036444(-)$1	219	58	62	12.0000
CAGG	chr3:184101219-184101531(+)$1	312	34	38	12.0000
CAGG	chr16:16295779-16296014(-)$1	235	96	100	12.0000
CAGG	chr12:6560448-6560712(-)$1	264	30	34	12.0000
CAGG	chr5:72794299-72794641(+)$1	342	12	16	12.0000
CAGG	chr1:179198371-179198673(-)$1	302	23	27	12.0000
CAGG	chr2:241075391-241075718(-)$1	327	204	208	12.0000
CAGG	chr9:139756683-139756919(-)$1	236	119	123	12.0000
CAGG	chr16:88802630-88802882(-)$1	252	2	6	12.0000
CAGG	chr20:57274158-57274413(+)$1	255	222	226	12.0000
CAGG	chr13:113761111-113761323(+)$1	212	44	48	12.0000
CAGG	chr1:17929912-17930130(+)$1	218	40	44	12.0000
CAGG	chr3:52443790-52444074(-)$1	284	8	12	12.0000
CAGG	chr2:241512998-241513331(+)$1	333	26	30	12.0000
CAGG	chr15:101847422-101847712(-)$1	290	33	37	12.0000
CAGG	chr7:73082306-73082595(+)$1	289	75	79	12.0000
CAGG	chr2:242157628-242157900(+)$1	272	22	26	12.0000
CAGG	chr10:91404795-91405045(-)$1	250	16	20	12.0000
CAGG	chr12:125263031-125263311(-)$1	280	16	20	12.0000
CAGG	chr19:54966618-54966847(+)$1	229	66	70	12.0000
CAGG	chr3:48465216-48465446(-)$1	230	137	141	12.0000
CAGG	chr20:60907632-60907868(-)$1	236	0	4	12.0000
CAGG	chr2:32613848-32614102(+)$1	254	144	148	12.0000
CAGG	chr7:77166754-77166966(+)$1	212	151	155	12.0000
CAGG	chr9:117015102-117015311(+)$1	209	53	57	12.0000
CAGG	chr3:48452287-48452525(-)$1	238	125	129	12.0000
CAGG	chr1:227171613-227171919(+)$1	306	178	182	12.0000
CAGG	chr7:117824218-117824527(+)$1	309	271	275	12.0000
CAGG	chr14:21945278-21945558(+)$1	280	221	225	12.0000
CAGG	chr7:100285341-100285607(-)$1	266	98	102	12.0000
CAGG	chr1:110163583-110163877(+)$1	294	67	71	12.0000
CAGG	chr9:116958144-116958391(+)$1	247	91	95	12.0000
CAGG	chr15:75654882-75655100(-)$1	218	115	119	12.0000
CAGG	chr4:9987200-9987428(-)$1	228	8	12	12.0000
CAGG	chr4:1804539-1804798(+)$1	259	249	253	12.0000
CAGG	chr16:16139634-16139921(+)$1	287	32	36	12.0000
CAGG	chr1:234601301-234601550(-)$1	249	23	27	12.0000
cagg	chr19:1053165-1053468(+)$1	303	1	5	12.0000
CAGG	chr9:117051101-117051338(+)$1	237	22	26	12.0000
CAGG	chr7:100136906-100137121(+)$1	215	183	187	12.0000
CAGG	chr17:40065679-40065920(-)$1	241	208	212	12.0000
CAGG	chr12:103310789-103311069(-)$1	280	186	190	12.0000
CAGG	chr10:120801471-120801771(-)$1	300	6	10	12.0000
CAGG	chr16:16272612-16272852(-)$1	240	2	6	12.0000
CAGG	chr15:38776582-38776897(+)$1	315	142	146	12.0000
CAGG	chr2:162929815-162930094(-)$1	279	227	231	12.0000
CAGG	chr9:117026538-117026754(+)$1	216	9	13	12.0000
cagg	chr1:156627432-156627720(-)$1	288	29	33	12.0000
CAGG	chr5:180651357-180651644(+)$1	287	257	261	12.0000
cAGG	chr14:23790723-23790930(+)$1	207	82	86	12.0000
CAGG	chr1:11082278-11082517(+)$1	239	26	30	12.0000
CAGG	chr4:184181960-184182265(+)$1	305	2	6	12.0000
CAGG	chr16:72134241-72134580(+)$1	339	4	8	12.0000
CAGG	chr11:65321473-65321729(-)$1	256	7	11	12.0000
CAGG	chr4:74043087-74043334(-)$1	247	105	109	12.0000
CAGG	chr20:32247328-32247580(-)$1	252	39	43	12.0000
CAGG	chr22:24988286-24988521(-)$1	235	29	33	12.0000
CAGG	chr19:42794958-42795220(+)$1	262	75	79	12.0000
CAGG	chr1:39851150-39851466(+)$1	316	15	19	12.0000
CAGG	chr11:64003585-64003838(+)$1	253	15	19	12.0000
CAGG	chr17:16024265-16024549(-)$1	284	63	67	12.0000
CAGG	chr16:16267047-16267293(-)$1	246	29	33	12.0000
CAGG	chr16:448089-448332(+)$1	243	9	13	12.0000
CAGG	chr20:2635308-2635559(+)$1	251	10	14	12.0000
CAGG	chr6:34359846-34360149(-)$1	303	118	122	12.0000
CAGG	chr19:54678009-54678332(-)$1	323	204	208	12.0000
CAGG	chr22:20102790-20103047(-)$1	257	16	20	12.0000
CAGG	chr14:23777997-23778233(+)$1	236	24	28	12.0000
CAGG	chr1:156347833-156348113(+)$1	280	158	162	12.0000
cagg	chr16:67700243-67700536(-)$1	293	37	41	12.0000
CAGG	chr20:2819571-2819782(-)$1	211	0	4	12.0000
CAGG	chr17:42400776-42401048(-)$1	272	100	104	12.0000
CAGG	chr17:41622503-41622810(+)$1	307	35	39	12.0000

#otherMatches

#Struct PSSM
cc""	chr1:245026993-245027244(-)$1	251	40	44	12.0000
ee]a	chr19:39440358-39440630(-)$1	272	41	45	12.0000
e22f	chr9:136223037-136223273(-)$1	236	95	99	12.0000
ddd[	chr14:23790715-23790923(+)$1	208	90	94	12.0000
MMDD	chr11:93474479-93474757(-)$1	278	189	193	12.0000
bbee	chr16:28878053-28878296(+)$1	243	92	96	12.0000
EECC	chrX:53634393-53634662(-)$1	269	53	57	12.0000
G:cc	chr19:2270408-2270664(+)$1	256	80	84	12.0000
ffff	chr7:5754666-5754923(-)$1	257	66	70	12.0000
d[==	chr3:51422656-51422976(+)$1	320	138	142	12.0000
EEEE	chr3:122785824-122786159(+)$1	335	121	125	12.0000
EEEE	chr1:156351126-156351365(+)$1	239	222	226	12.0000
::bb	chr12:56583109-56583445(-)$1	336	0	4	12.0000
EEEE	chr14:24036225-24036444(-)$1	219	58	62	12.0000
[eee	chr3:184101219-184101531(+)$1	312	34	38	12.0000
:::E	chr16:16295779-16296014(-)$1	235	96	100	12.0000
bb]a	chr12:6560448-6560712(-)$1	264	30	34	12.0000
Dccc	chr5:72794299-72794641(+)$1	342	12	16	12.0000
333c	chr1:179198371-179198673(-)$1	302	23	27	12.0000
c]a]	chr2:241075391-241075718(-)$1	327	204	208	12.0000
gggg	chr9:139756683-139756919(-)$1	236	119	123	12.0000
EEEE	chr16:88802630-88802882(-)$1	252	2	6	12.0000
D}EE	chr20:57274158-57274413(+)$1	255	222	226	12.0000
wwbb	chr13:113761111-113761323(+)$1	212	44	48	12.0000
##ee	chr1:17929912-17930130(+)$1	218	40	44	12.0000
eeee	chr3:52443790-52444074(-)$1	284	8	12	12.0000
[bbn	chr2:241512998-241513331(+)$1	333	26	30	12.0000
eeee	chr15:101847422-101847712(-)$1	290	33	37	12.0000
!!bb	chr7:73082306-73082595(+)$1	289	75	79	12.0000
"eee	chr2:242157628-242157900(+)$1	272	22	26	12.0000
a:::	chr10:91404795-91405045(-)$1	250	16	20	12.0000
pppb	chr12:125263031-125263311(-)$1	280	16	20	12.0000
fffo	chr19:54966618-54966847(+)$1	229	66	70	12.0000
FFFF	chr3:48465216-48465446(-)$1	230	137	141	12.0000
CCC{	chr20:60907632-60907868(-)$1	236	0	4	12.0000
bb22	chr2:32613848-32614102(+)$1	254	144	148	12.0000
d::g	chr7:77166754-77166966(+)$1	212	151	155	12.0000
ggcc	chr9:117015102-117015311(+)$1	209	53	57	12.0000
}EEE	chr3:48452287-48452525(-)$1	238	125	129	12.0000
dddd	chr1:227171613-227171919(+)$1	306	178	182	12.0000
3ddd	chr7:117824218-117824527(+)$1	309	271	275	12.0000
dddd	chr14:21945278-21945558(+)$1	280	221	225	12.0000
EEEE	chr7:100285341-100285607(-)$1	266	98	102	12.0000
IIII	chr1:110163583-110163877(+)$1	294	67	71	12.0000
rrrr	chr9:116958144-116958391(+)$1	247	91	95	12.0000
dddd	chr15:75654882-75655100(-)$1	218	115	119	12.0000
DDD:	chr4:9987200-9987428(-)$1	228	8	12	12.0000
EEEE	chr4:1804539-1804798(+)$1	259	249	253	12.0000
:ccc	chr16:16139634-16139921(+)$1	287	32	36	12.0000
E{BB	chr1:234601301-234601550(-)$1	249	23	27	12.0000
::DD	chr19:1053165-1053468(+)$1	303	1	5	12.0000
ESSS	chr9:117051101-117051338(+)$1	237	22	26	12.0000
c22c	chr7:100136906-100137121(+)$1	215	183	187	12.0000
:::e	chr17:40065679-40065920(-)$1	241	208	212	12.0000
eeee	chr12:103310789-103311069(-)$1	280	186	190	12.0000
c[bb	chr10:120801471-120801771(-)$1	300	6	10	12.0000
GGGG	chr16:16272612-16272852(-)$1	240	2	6	12.0000
c&&&	chr15:38776582-38776897(+)$1	315	142	146	12.0000
""cc	chr2:162929815-162930094(-)$1	279	227	231	12.0000
G:dd	chr9:117026538-117026754(+)$1	216	9	13	12.0000
d[au	chr1:156627432-156627720(-)$1	288	29	33	12.0000
JJdd	chr5:180651357-180651644(+)$1	287	257	261	12.0000
ddd[	chr14:23790723-23790930(+)$1	207	82	86	12.0000
ffff	chr1:11082278-11082517(+)$1	239	26	30	12.0000
CKKD	chr4:184181960-184182265(+)$1	305	2	6	12.0000
ddnn	chr16:72134241-72134580(+)$1	339	4	8	12.0000
hhhh	chr11:65321473-65321729(-)$1	256	7	11	12.0000
Iddd	chr4:74043087-74043334(-)$1	247	105	109	12.0000
EEEE	chr20:32247328-32247580(-)$1	252	39	43	12.0000
c[ff	chr22:24988286-24988521(-)$1	235	29	33	12.0000
IIII	chr19:42794958-42795220(+)$1	262	75	79	12.0000
ceee	chr1:39851150-39851466(+)$1	316	15	19	12.0000
{DDD	chr11:64003585-64003838(+)$1	253	15	19	12.0000
e::F	chr17:16024265-16024549(-)$1	284	63	67	12.0000
]ccc	chr16:16267047-16267293(-)$1	246	29	33	12.0000
FFFF	chr16:448089-448332(+)$1	243	9	13	12.0000
EEEE	chr20:2635308-2635559(+)$1	251	10	14	12.0000
e22c	chr6:34359846-34360149(-)$1	303	118	122	12.0000
g:dd	chr19:54678009-54678332(-)$1	323	204	208	12.0000
#fff	chr22:20102790-20103047(-)$1	257	16	20	12.0000
ffff	chr14:23777997-23778233(+)$1	236	24	28	12.0000
c[dd	chr1:156347833-156348113(+)$1	280	158	162	12.0000
c[a[	chr16:67700243-67700536(-)$1	293	37	41	12.0000
eeee	chr20:2819571-2819782(-)$1	211	0	4	12.0000
llee	chr17:42400776-42401048(-)$1	272	100	104	12.0000
BKKE	chr17:41622503-41622810(+)$1	307	35	39	12.0000

#DB
((..	chr1:245026993-245027244(-)$1	1	40	44	12.0000
)).)	chr19:39440358-39440630(-)$1	1	41	45	12.0000
)..)	chr9:136223037-136223273(-)$1	1	95	99	12.0000
(((.	chr14:23790715-23790923(+)$1	1	90	94	12.0000
..((	chr11:93474479-93474757(-)$1	1	189	193	12.0000
((((	chr16:28878053-28878296(+)$1	1	92	96	12.0000
((((	chrX:53634393-53634662(-)$1	1	53	57	12.0000
(.((	chr19:2270408-2270664(+)$1	1	80	84	12.0000
((((	chr7:5754666-5754923(-)$1	1	66	70	12.0000
(.((	chr3:51422656-51422976(+)$1	1	138	142	12.0000
((((	chr3:122785824-122786159(+)$1	1	121	125	12.0000
))))	chr1:156351126-156351365(+)$1	1	222	226	12.0000
..((	chr12:56583109-56583445(-)$1	1	0	4	12.0000
((((	chr14:24036225-24036444(-)$1	1	58	62	12.0000
.(((	chr3:184101219-184101531(+)$1	1	34	38	12.0000
...(	chr16:16295779-16296014(-)$1	1	96	100	12.0000
)).)	chr12:6560448-6560712(-)$1	1	30	34	12.0000
((((	chr5:72794299-72794641(+)$1	1	12	16	12.0000
...)	chr1:179198371-179198673(-)$1	1	23	27	12.0000
).).	chr2:241075391-241075718(-)$1	1	204	208	12.0000
((((	chr9:139756683-139756919(-)$1	1	119	123	12.0000
((((	chr16:88802630-88802882(-)$1	1	2	6	12.0000
).))	chr20:57274158-57274413(+)$1	1	222	226	12.0000
..))	chr13:113761111-113761323(+)$1	1	44	48	12.0000
..((	chr1:17929912-17930130(+)$1	1	40	44	12.0000
((((	chr3:52443790-52444074(-)$1	1	8	12	12.0000
.((.	chr2:241512998-241513331(+)$1	1	26	30	12.0000
))))	chr15:101847422-101847712(-)$1	1	33	37	12.0000
..((	chr7:73082306-73082595(+)$1	1	75	79	12.0000
.(((	chr2:242157628-242157900(+)$1	1	22	26	12.0000
)...	chr10:91404795-91405045(-)$1	1	16	20	12.0000
...)	chr12:125263031-125263311(-)$1	1	16	20	12.0000
(((.	chr19:54966618-54966847(+)$1	1	66	70	12.0000
((((	chr3:48465216-48465446(-)$1	1	137	141	12.0000
(((.	chr20:60907632-60907868(-)$1	1	0	4	12.0000
))..	chr2:32613848-32614102(+)$1	1	144	148	12.0000
)..(	chr7:77166754-77166966(+)$1	1	151	155	12.0000
((((	chr9:117015102-117015311(+)$1	1	53	57	12.0000
.)))	chr3:48452287-48452525(-)$1	1	125	129	12.0000
((((	chr1:227171613-227171919(+)$1	1	178	182	12.0000
.)))	chr7:117824218-117824527(+)$1	1	271	275	12.0000
))))	chr14:21945278-21945558(+)$1	1	221	225	12.0000
((((	chr7:100285341-100285607(-)$1	1	98	102	12.0000
((((	chr1:110163583-110163877(+)$1	1	67	71	12.0000
....	chr9:116958144-116958391(+)$1	1	91	95	12.0000
))))	chr15:75654882-75655100(-)$1	1	115	119	12.0000
(((.	chr4:9987200-9987428(-)$1	1	8	12	12.0000
))))	chr4:1804539-1804798(+)$1	1	249	253	12.0000
.(((	chr16:16139634-16139921(+)$1	1	32	36	12.0000
(.((	chr1:234601301-234601550(-)$1	1	23	27	12.0000
..((	chr19:1053165-1053468(+)$1	1	1	5	12.0000
(...	chr9:117051101-117051338(+)$1	1	22	26	12.0000
)..)	chr7:100136906-100137121(+)$1	1	183	187	12.0000
...(	chr17:40065679-40065920(-)$1	1	208	212	12.0000
))))	chr12:103310789-103311069(-)$1	1	186	190	12.0000
(.((	chr10:120801471-120801771(-)$1	1	6	10	12.0000
((((	chr16:16272612-16272852(-)$1	1	2	6	12.0000
(...	chr15:38776582-38776897(+)$1	1	142	146	12.0000
..((	chr2:162929815-162930094(-)$1	1	227	231	12.0000
(.((	chr9:117026538-117026754(+)$1	1	9	13	12.0000
(.(.	chr1:156627432-156627720(-)$1	1	29	33	12.0000
))((	chr5:180651357-180651644(+)$1	1	257	261	12.0000
(((.	chr14:23790723-23790930(+)$1	1	82	86	12.0000
((((	chr1:11082278-11082517(+)$1	1	26	30	12.0000
(..(	chr4:184181960-184182265(+)$1	1	2	6	12.0000
((..	chr16:72134241-72134580(+)$1	1	4	8	12.0000
((((	chr11:65321473-65321729(-)$1	1	7	11	12.0000
((((	chr4:74043087-74043334(-)$1	1	105	109	12.0000
((((	chr20:32247328-32247580(-)$1	1	39	43	12.0000
(.((	chr22:24988286-24988521(-)$1	1	29	33	12.0000
((((	chr19:42794958-42795220(+)$1	1	75	79	12.0000
((((	chr1:39851150-39851466(+)$1	1	15	19	12.0000
.(((	chr11:64003585-64003838(+)$1	1	15	19	12.0000
)..(	chr17:16024265-16024549(-)$1	1	63	67	12.0000
.)))	chr16:16267047-16267293(-)$1	1	29	33	12.0000
((((	chr16:448089-448332(+)$1	1	9	13	12.0000
((((	chr20:2635308-2635559(+)$1	1	10	14	12.0000
)..)	chr6:34359846-34360149(-)$1	1	118	122	12.0000
).((	chr19:54678009-54678332(-)$1	1	204	208	12.0000
.(((	chr22:20102790-20103047(-)$1	1	16	20	12.0000
((((	chr14:23777997-23778233(+)$1	1	24	28	12.0000
(.((	chr1:156347833-156348113(+)$1	1	158	162	12.0000
(.(.	chr16:67700243-67700536(-)$1	1	37	41	12.0000
((((	chr20:2819571-2819782(-)$1	1	0	4	12.0000
..))	chr17:42400776-42401048(-)$1	1	100	104	12.0000
(..(	chr17:41622503-41622810(+)$1	1	35	39	12.0000

#PSSM
C : 0.94	c : 0.05	
A : 0.96	a : 0.03	
G : 0.96	g : 0.03	
G : 0.96	g : 0.03	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_transcript_m3_run1.nuc.txt

#NT
CCCUCCC	chr7:143087765-143088034(+)$1	269	110	117	16.8823
uccuccc	chr12:125338850-125339101(-)$1	251	101	108	18.7450
UCCUCCC	chr22:25545386-25545669(+)$1	283	124	131	18.7450
gccuccc	chrX:133099187-133099481(-)$1	294	131	138	16.5882
UCCUCCC	chr17:36715314-36715677(-)$1	363	263	270	18.7450
cccuccc	chr19:39317539-39317884(-)$1	345	102	109	16.8823
uccuccc	chr11:70844296-70844639(-)$1	343	251	258	18.7450
uccuccc	chr17:8063612-8063904(-)$1	292	110	117	18.7450
ACCUCCC	chr7:47479504-47479781(-)$1	277	2	9	16.7843
CCCUCCC	chr17:75447274-75447592(+)$1	318	44	51	16.8823
uccuccc	chr6:30611139-30611393(+)$1	254	138	145	18.7450
UCCUCCC	chr15:90552620-90552869(+)$1	249	93	100	18.7450
Uccuccc	chr22:22332173-22332418(-)$1	245	45	52	18.7450
uccuccc	chr3:128050021-128050361(+)$1	340	245	252	18.7450
cccuccc	chrX:39993196-39993503(-)$1	307	202	209	16.8823
ACCUCCC	chr9:114220769-114221047(-)$1	278	153	160	16.7843
UCCUCCC	chr19:1257519-1257779(+)$1	260	50	57	18.7450
accuccc	chr20:31012618-31012901(+)$1	283	117	124	16.7843
accuccc	chr6:119507421-119507690(-)$1	269	132	139	16.7843
uccuccc	chr16:89895286-89895550(+)$1	264	93	100	18.7450
gccuccc	chr7:916580-916857(+)$1	277	193	200	16.5882
ACCUCCC	chr1:27321799-27322084(+)$1	285	237	244	16.7843
uccuccc	chr6:1687900-1688144(-)$1	244	132	139	18.7450
uccuccc	chrX:133930208-133930497(-)$1	289	51	58	18.7450
uccuccc	chr12:125338989-125339263(-)$1	274	263	270	18.7450
UCCUCCC	chr17:76111585-76111802(-)$1	217	192	199	18.7450
uccuccc	chr21:46909960-46910224(+)$1	264	1	8	18.7450
uccuccc	chr19:35546430-35546690(+)$1	260	166	173	18.7450
CCCUCCC	chr17:7120594-7120938(-)$1	344	241	248	16.8823
uccuccc	chr8:131443966-131444258(-)$1	292	8	15	18.7450
GCCUCCC	chr1:17965975-17966243(+)$1	268	37	44	16.5882
UCCUCCC	chr5:172353948-172354210(+)$1	262	76	83	18.7450
UCCUCCC	chr3:185364228-185364471(-)$1	243	36	43	18.7450
ACCUCCC	chr12:122617970-122618256(+)$1	286	35	42	16.7843
CCCUCCC	chr16:70718067-70718319(-)$1	252	192	199	16.8823
CCCUCCC	chr16:30675513-30675845(+)$1	332	52	59	16.8823
UCCUCCC	chr12:53343428-53343766(-)$1	338	6	13	18.7450
uccuccc	chr20:30155807-30156078(+)$1	271	11	18	18.7450
UCCUCCC	chr3:52264364-52264695(-)$1	331	244	251	18.7450
GCCUCCC	chr22:42560850-42561181(-)$1	331	99	106	16.5882
accuccc	chr18:56043731-56043993(+)$1	262	53	60	16.7843
ACCUCCC	chr19:10471790-10472082(-)$1	292	173	180	16.7843
uccuccc	chr3:71484456-71484678(-)$1	222	3	10	18.7450
GCCUCCC	chr9:116930917-116931226(+)$1	309	17	24	16.5882
GCCUCCC	chr9:116930860-116931117(+)$1	257	74	81	16.5882
CCCUCCC	chr6:30138326-30138653(+)$1	327	37	44	16.8823
uccuccc	chr6:30611193-30611438(+)$1	245	84	91	18.7450
uccuccc	chr11:3933323-3933629(+)$1	306	51	58	18.7450
uccuccc	chr1:234532865-234533184(-)$1	319	31	38	18.7450
CCCUCCC	chr13:113529242-113529587(+)$1	345	175	182	16.8823

#otherMatches

#Struct PSSM
::::ggg	chr9:127259576-127259871(-)$1	295	119	126	18.7450
^^^^^^^	chr7:143087765-143088034(+)$1	269	110	117	16.8823
:::::::	chr12:125338850-125339101(-)$1	251	101	108	18.7450
::cccqq	chr22:25545386-25545669(+)$1	283	124	131	18.7450
FFF{CCC	chrX:133099187-133099481(-)$1	294	131	138	16.5882
sssssss	chr17:36715314-36715677(-)$1	363	263	270	18.7450
:::::::	chr19:39317539-39317884(-)$1	345	102	109	16.8823
:::::::	chr11:70844296-70844639(-)$1	343	251	258	18.7450
+++++++	chr17:8063612-8063904(-)$1	292	110	117	18.7450
ccccnnn	chr7:47479504-47479781(-)$1	277	2	9	16.7843
eee:ddd	chr17:75447274-75447592(+)$1	318	44	51	16.8823
:::::::	chr6:30611139-30611393(+)$1	254	138	145	18.7450
:::::::	chr15:90552620-90552869(+)$1	249	93	100	18.7450
:::::::	chr22:22332173-22332418(-)$1	245	45	52	18.7450
:::::dd	chr3:128050021-128050361(+)$1	340	245	252	18.7450
hhhhhhh	chrX:39993196-39993503(-)$1	307	202	209	16.8823
ccbb"""	chr9:114220769-114221047(-)$1	278	153	160	16.7843
cpppppp	chr19:1257519-1257779(+)$1	260	50	57	18.7450
cc:::::	chr20:31012618-31012901(+)$1	283	117	124	16.7843
ccc]a]d	chr6:119507421-119507690(-)$1	269	132	139	16.7843
:::::::	chr16:89895286-89895550(+)$1	264	93	100	18.7450
e666666	chr7:916580-916857(+)$1	277	193	200	16.5882
:::::::	chr1:27321799-27322084(+)$1	285	237	244	16.7843
fff::::	chr6:1687900-1688144(-)$1	244	132	139	18.7450
:::::::	chrX:133930208-133930497(-)$1	289	51	58	18.7450
:::::::	chr12:125338989-125339263(-)$1	274	263	270	18.7450
ffooooo	chr17:76111585-76111802(-)$1	217	192	199	18.7450
:::::::	chr21:46909960-46910224(+)$1	264	1	8	18.7450
qqqqqqq	chr19:35546430-35546690(+)$1	260	166	173	18.7450
:::::::	chr17:7120594-7120938(-)$1	344	241	248	16.8823
:::::::	chr8:131443966-131444258(-)$1	292	8	15	18.7450
a]dddd:	chr1:17965975-17966243(+)$1	268	37	44	16.5882
:FFFFFF	chr5:172353948-172354210(+)$1	262	76	83	18.7450
:::::::	chr3:185364228-185364471(-)$1	243	36	43	18.7450
%%%%%%c	chr12:122617970-122618256(+)$1	286	35	42	16.7843
ccc::::	chr16:70718067-70718319(-)$1	252	192	199	16.8823
dqqqqqq	chr16:30675513-30675845(+)$1	332	52	59	16.8823
HH:cccm	chr12:53343428-53343766(-)$1	338	6	13	18.7450
ooooooa	chr20:30155807-30156078(+)$1	271	11	18	18.7450
]bb::::	chr3:52264364-52264695(-)$1	331	244	251	18.7450
bbooooo	chr22:42560850-42561181(-)$1	331	99	106	16.5882
c]ccc::	chr18:56043731-56043993(+)$1	262	53	60	16.7843
:::::::	chr19:10471790-10472082(-)$1	292	173	180	16.7843
:::::::	chr3:71484456-71484678(-)$1	222	3	10	18.7450
EEEEE::	chr9:116930917-116931226(+)$1	309	17	24	16.5882
:::::::	chr9:116930860-116931117(+)$1	257	74	81	16.5882
JJJJJJF	chr6:30138326-30138653(+)$1	327	37	44	16.8823
:::::::	chr6:30611193-30611438(+)$1	245	84	91	18.7450
:::::::	chr11:3933323-3933629(+)$1	306	51	58	18.7450
:::::::	chr1:234532865-234533184(-)$1	319	31	38	18.7450
zzzzzzz	chr13:113529242-113529587(+)$1	345	175	182	16.8823

#DB
....(((	chr9:127259576-127259871(-)$1	1	119	126	18.7450
.......	chr7:143087765-143088034(+)$1	1	110	117	16.8823
.......	chr12:125338850-125339101(-)$1	1	101	108	18.7450
..(((..	chr22:25545386-25545669(+)$1	1	124	131	18.7450
(((.(((	chrX:133099187-133099481(-)$1	1	131	138	16.5882
.......	chr17:36715314-36715677(-)$1	1	263	270	18.7450
.......	chr19:39317539-39317884(-)$1	1	102	109	16.8823
.......	chr11:70844296-70844639(-)$1	1	251	258	18.7450
.......	chr17:8063612-8063904(-)$1	1	110	117	18.7450
((((...	chr7:47479504-47479781(-)$1	1	2	9	16.7843
))).(((	chr17:75447274-75447592(+)$1	1	44	51	16.8823
.......	chr6:30611139-30611393(+)$1	1	138	145	18.7450
.......	chr15:90552620-90552869(+)$1	1	93	100	18.7450
.......	chr22:22332173-22332418(-)$1	1	45	52	18.7450
.....((	chr3:128050021-128050361(+)$1	1	245	252	18.7450
)))))))	chrX:39993196-39993503(-)$1	1	202	209	16.8823
((((...	chr9:114220769-114221047(-)$1	1	153	160	16.7843
(......	chr19:1257519-1257779(+)$1	1	50	57	18.7450
)).....	chr20:31012618-31012901(+)$1	1	117	124	16.7843
))).).)	chr6:119507421-119507690(-)$1	1	132	139	16.7843
.......	chr16:89895286-89895550(+)$1	1	93	100	18.7450
)......	chr7:916580-916857(+)$1	1	193	200	16.5882
.......	chr1:27321799-27322084(+)$1	1	237	244	16.7843
)))....	chr6:1687900-1688144(-)$1	1	132	139	18.7450
.......	chrX:133930208-133930497(-)$1	1	51	58	18.7450
.......	chr12:125338989-125339263(-)$1	1	263	270	18.7450
((.....	chr17:76111585-76111802(-)$1	1	192	199	18.7450
.......	chr21:46909960-46910224(+)$1	1	1	8	18.7450
.......	chr19:35546430-35546690(+)$1	1	166	173	18.7450
.......	chr17:7120594-7120938(-)$1	1	241	248	16.8823
.......	chr8:131443966-131444258(-)$1	1	8	15	18.7450
).)))).	chr1:17965975-17966243(+)$1	1	37	44	16.5882
.((((((	chr5:172353948-172354210(+)$1	1	76	83	18.7450
.......	chr3:185364228-185364471(-)$1	1	36	43	18.7450
......(	chr12:122617970-122618256(+)$1	1	35	42	16.7843
)))....	chr16:70718067-70718319(-)$1	1	192	199	16.8823
(......	chr16:30675513-30675845(+)$1	1	52	59	16.8823
((.(((.	chr12:53343428-53343766(-)$1	1	6	13	18.7450
......)	chr20:30155807-30156078(+)$1	1	11	18	18.7450
.))....	chr3:52264364-52264695(-)$1	1	244	251	18.7450
((.....	chr22:42560850-42561181(-)$1	1	99	106	16.5882
).)))..	chr18:56043731-56043993(+)$1	1	53	60	16.7843
.......	chr19:10471790-10472082(-)$1	1	173	180	16.7843
.......	chr3:71484456-71484678(-)$1	1	3	10	18.7450
(((((..	chr9:116930917-116931226(+)$1	1	17	24	16.5882
.......	chr9:116930860-116931117(+)$1	1	74	81	16.5882
(((((((	chr6:30138326-30138653(+)$1	1	37	44	16.8823
.......	chr6:30611193-30611438(+)$1	1	84	91	18.7450
.......	chr11:3933323-3933629(+)$1	1	51	58	18.7450
.......	chr1:234532865-234533184(-)$1	1	31	38	18.7450
.......	chr13:113529242-113529587(+)$1	1	175	182	16.8823

#PSSM
u : 0.33	U : 0.21	C : 0.13	A : 0.09	G : 0.07	a : 0.05	g : 0.03	c : 0.03	
C : 0.50	c : 0.49	
C : 0.50	c : 0.49	
U : 0.50	u : 0.49	
C : 0.50	c : 0.49	
C : 0.50	c : 0.49	
C : 0.50	c : 0.49	

#score	910.6078431372547
#seq	51
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_CDS_m1_run1.nuc.txt

#NT
AAAUAAG	chr2:55252674-55252929(-)$1	255	43	50	12.9298
AAAAAAU	chr3:37368521-37368768(+)$1	247	62	69	12.7543
AACAAAG	chr17:29161370-29161639(+)$1	269	11	18	12.9298
AUAAAAG	chr2:152319888-152320131(+)$1	243	41	48	13.2807
AAACAAG	chr10:70333083-70333369(+)$1	286	14	21	13.1052
GAAAAAG	chr12:46319944-46320217(-)$1	273	107	114	13.7192
AAAAAAG	chr6:64421398-64421666(+)$1	268	224	231	17.2280
AAAAGAG	chr17:29162617-29162880(+)$1	263	8	15	12.9298
GAAAAAG	chr11:5443360-5443645(-)$1	285	258	265	13.7192
AAAAUAG	chr1:40702444-40702703(+)$1	259	58	65	13.1052
AAACAAG	chr2:152320878-152321116(+)$1	238	16	23	13.1052
AAACAAG	chr7:91690501-91690774(+)$1	273	126	133	13.1052
GAAAAAG	chr15:40916261-40916542(+)$1	281	2	9	13.7192
CAAAAAG	chr6:4032031-4032329(+)$1	298	3	10	13.6315
GAAAAAG	chr2:170493232-170493585(+)$1	353	30	37	13.7192
AAAAAAG	chr12:46320921-46321191(-)$1	270	260	267	17.2280
AAAAAAG	chr2:170493659-170493936(+)$1	277	145	152	17.2280
AAAGAAG	chr3:25667994-25668255(-)$1	261	21	28	13.1052
CAAAAAG	chr17:27613805-27614096(-)$1	291	20	27	13.6315
GAAAAAG	chr11:5423936-5424208(-)$1	272	75	82	13.7192
GAAAAAG	chr6:87965634-87965938(+)$1	304	218	225	13.7192
AGAAAAG	chr8:124266895-124267183(-)$1	288	276	283	13.3684
ACAAAAG	chr2:145157097-145157406(-)$1	309	32	39	13.1929
AAGAAAG	chr2:109380765-109381053(+)$1	288	277	284	12.9298
AAAAAAU	chr2:55253818-55254056(-)$1	238	85	92	12.7543
AUAAAAG	chr1:197072614-197072896(-)$1	282	31	38	13.2807
AAAAAAG	chr21:38537785-38538081(+)$1	296	269	276	17.2280
AAAACAG	chr3:47164783-47165034(-)$1	251	16	23	13.1052
AGAAAAG	chr3:160150795-160151038(+)$1	243	32	39	13.3684
AAAACAG	chr17:27614505-27614764(-)$1	259	222	229	13.1052
AACAAAG	chr2:55253460-55253726(-)$1	266	96	103	12.9298
AAAAUAG	chr1:214814853-214815099(+)$1	246	21	28	13.1052
CAAAAAG	chr1:203766895-203767175(+)$1	280	0	7	13.6315
AAAGAAG	chr1:203767359-203767615(+)$1	256	156	163	13.1052
AAAAAAG	chr2:152321203-152321518(+)$1	315	116	123	17.2280
AAAAAAG	chr2:55252969-55253247(-)$1	278	14	21	17.2280
AAUAAAG	chr1:155451016-155451285(-)$1	269	41	48	12.9298
AGAAAAG	chr1:46073433-46073660(+)$1	227	7	14	13.3684
AAAGAAG	chr10:70333644-70333911(+)$1	267	202	209	13.1052
AAAAAAG	chr6:161469719-161470046(+)$1	327	305	312	17.2280
AAAACAG	chr7:91631474-91631749(+)$1	275	7	14	13.1052
CAAAAAG	chr1:111494799-111495117(-)$1	318	80	87	13.6315
AGAAAAG	chr1:111490755-111491014(-)$1	259	6	13	13.3684
AAAAAAG	chr8:53569095-53569403(-)$1	308	65	72	17.2280
AAAAAAG	chr3:42679728-42679994(+)$1	266	37	44	17.2280
AAAAAAG	chr2:170493740-170494003(+)$1	263	64	71	17.2280
AAAAUAG	chr2:152319594-152319919(+)$1	325	131	138	13.1052
ACAAAAG	chr2:55252344-55252637(-)$1	293	89	96	13.1929
AAAAAAG	chr3:42680266-42680503(+)$1	237	53	60	17.2280
AAGAAAG	chr1:155449336-155449573(-)$1	237	33	40	12.9298
AAAAAAG	chr3:160143809-160144057(+)$1	248	132	139	17.2280
AUAAAAG	chr3:42679138-42679394(+)$1	256	51	58	13.2807
AAAAAAG	chr15:40916935-40917211(+)$1	276	36	43	17.2280
AAAAAAU	chr2:55253744-55254018(-)$1	274	47	54	12.7543
CAAAAAG	chr1:155447776-155448047(-)$1	271	23	30	13.6315
AAAAAAG	chr10:119043418-119043721(-)$1	303	52	59	17.2280

#otherMatches

#Struct PSSM
:::::bb	chr1:203766801-203767061(+)$1	260	5	12	12.9298
WWWWWWW	chr2:55252674-55252929(-)$1	255	43	50	12.9298
::::::e	chr3:37368521-37368768(+)$1	247	62	69	12.7543
:::::ee	chr17:29161370-29161639(+)$1	269	11	18	12.9298
::::::E	chr2:152319888-152320131(+)$1	243	41	48	13.2807
pppppcc	chr10:70333083-70333369(+)$1	286	14	21	13.1052
333dddd	chr12:46319944-46320217(-)$1	273	107	114	13.7192
GGGGGGG	chr6:64421398-64421666(+)$1	268	224	231	17.2280
mmmgggg	chr17:29162617-29162880(+)$1	263	8	15	12.9298
:::::::	chr11:5443360-5443645(-)$1	285	258	265	13.7192
::::::d	chr1:40702444-40702703(+)$1	259	58	65	13.1052
##eeeee	chr2:152320878-152321116(+)$1	238	16	23	13.1052
444dddd	chr7:91690501-91690774(+)$1	273	126	133	13.1052
:::::cc	chr15:40916261-40916542(+)$1	281	2	9	13.7192
B::::::	chr6:4032031-4032329(+)$1	298	3	10	13.6315
vvvvvvv	chr2:170493232-170493585(+)$1	353	30	37	13.7192
qqqqqqd	chr12:46320921-46321191(-)$1	270	260	267	17.2280
^^^^^^e	chr2:170493659-170493936(+)$1	277	145	152	17.2280
MMMBB{G	chr3:25667994-25668255(-)$1	261	21	28	13.1052
BPPPPPP	chr17:27613805-27614096(-)$1	291	20	27	13.6315
ooooocc	chr11:5423936-5424208(-)$1	272	75	82	13.7192
tttttgg	chr6:87965634-87965938(+)$1	304	218	225	13.7192
:::::::	chr8:124266895-124267183(-)$1	288	276	283	13.3684
:::::::	chr2:145157097-145157406(-)$1	309	32	39	13.1929
:::::::	chr2:109380765-109381053(+)$1	288	277	284	12.9298
000000f	chr2:55253818-55254056(-)$1	238	85	92	12.7543
KFFFFFF	chr1:197072614-197072896(-)$1	282	31	38	13.2807
::::GGG	chr21:38537785-38538081(+)$1	296	269	276	17.2280
F::::::	chr3:47164783-47165034(-)$1	251	16	23	13.1052
!dddd[f	chr3:160150795-160151038(+)$1	243	32	39	13.3684
^^^^^^^	chr17:27614505-27614764(-)$1	259	222	229	13.1052
:::::::	chr2:55253460-55253726(-)$1	266	96	103	12.9298
:::::::	chr1:214814853-214815099(+)$1	246	21	28	13.1052
:::::::	chr1:203766895-203767175(+)$1	280	0	7	13.6315
======e	chr1:203767359-203767615(+)$1	256	156	163	13.1052
+++++++	chr2:152321203-152321518(+)$1	315	116	123	17.2280
JJKKDDD	chr2:55252969-55253247(-)$1	278	14	21	17.2280
DDDLLLB	chr1:155451016-155451285(-)$1	269	41	48	12.9298
:::::::	chr1:46073433-46073660(+)$1	227	7	14	13.3684
22fffff	chr10:70333644-70333911(+)$1	267	202	209	13.1052
sssssdd	chr6:161469719-161470046(+)$1	327	305	312	17.2280
::ddddm	chr7:91631474-91631749(+)$1	275	7	14	13.1052
dd4444e	chr1:111494799-111495117(-)$1	318	80	87	13.6315
:::::::	chr1:111490755-111491014(-)$1	259	6	13	13.3684
e$$$$$b	chr8:53569095-53569403(-)$1	308	65	72	17.2280
frrrrrr	chr3:42679728-42679994(+)$1	266	37	44	17.2280
'''''''	chr2:170493740-170494003(+)$1	263	64	71	17.2280
ggggg$$	chr2:152319594-152319919(+)$1	325	131	138	13.1052
ccmmmmc	chr2:55252344-55252637(-)$1	293	89	96	13.1929
wwwwwwh	chr3:42680266-42680503(+)$1	237	53	60	17.2280
[hhhhhh	chr1:155449336-155449573(-)$1	237	33	40	12.9298
qqqqqqa	chr3:160143809-160144057(+)$1	248	132	139	17.2280
zzzzzzc	chr3:42679138-42679394(+)$1	256	51	58	13.2807
pppppbb	chr15:40916935-40917211(+)$1	276	36	43	17.2280
000000f	chr2:55253744-55254018(-)$1	274	47	54	12.7543
^^^^^^^	chr1:155447776-155448047(-)$1	271	23	30	13.6315
cc####d	chr10:119043418-119043721(-)$1	303	52	59	17.2280

#DB
.....((	chr1:203766801-203767061(+)$1	1	5	12	12.9298
.......	chr2:55252674-55252929(-)$1	1	43	50	12.9298
......(	chr3:37368521-37368768(+)$1	1	62	69	12.7543
.....((	chr17:29161370-29161639(+)$1	1	11	18	12.9298
......)	chr2:152319888-152320131(+)$1	1	41	48	13.2807
.....))	chr10:70333083-70333369(+)$1	1	14	21	13.1052
...))))	chr12:46319944-46320217(-)$1	1	107	114	13.7192
)))))))	chr6:64421398-64421666(+)$1	1	224	231	17.2280
...))))	chr17:29162617-29162880(+)$1	1	8	15	12.9298
.......	chr11:5443360-5443645(-)$1	1	258	265	13.7192
......(	chr1:40702444-40702703(+)$1	1	58	65	13.1052
..(((((	chr2:152320878-152321116(+)$1	1	16	23	13.1052
...))))	chr7:91690501-91690774(+)$1	1	126	133	13.1052
.....((	chr15:40916261-40916542(+)$1	1	2	9	13.7192
(......	chr6:4032031-4032329(+)$1	1	3	10	13.6315
.......	chr2:170493232-170493585(+)$1	1	30	37	13.7192
......)	chr12:46320921-46321191(-)$1	1	260	267	17.2280
......)	chr2:170493659-170493936(+)$1	1	145	152	17.2280
...((.(	chr3:25667994-25668255(-)$1	1	21	28	13.1052
(......	chr17:27613805-27614096(-)$1	1	20	27	13.6315
.....))	chr11:5423936-5424208(-)$1	1	75	82	13.7192
.....))	chr6:87965634-87965938(+)$1	1	218	225	13.7192
.......	chr8:124266895-124267183(-)$1	1	276	283	13.3684
.......	chr2:145157097-145157406(-)$1	1	32	39	13.1929
.......	chr2:109380765-109381053(+)$1	1	277	284	12.9298
......)	chr2:55253818-55254056(-)$1	1	85	92	12.7543
.((((((	chr1:197072614-197072896(-)$1	1	31	38	13.2807
....)))	chr21:38537785-38538081(+)$1	1	269	276	17.2280
(......	chr3:47164783-47165034(-)$1	1	16	23	13.1052
.((((.(	chr3:160150795-160151038(+)$1	1	32	39	13.3684
.......	chr17:27614505-27614764(-)$1	1	222	229	13.1052
.......	chr2:55253460-55253726(-)$1	1	96	103	12.9298
.......	chr1:214814853-214815099(+)$1	1	21	28	13.1052
.......	chr1:203766895-203767175(+)$1	1	0	7	13.6315
))))))(	chr1:203767359-203767615(+)$1	1	156	163	13.1052
.......	chr2:152321203-152321518(+)$1	1	116	123	17.2280
((..(((	chr2:55252969-55253247(-)$1	1	14	21	17.2280
(((...(	chr1:155451016-155451285(-)$1	1	41	48	12.9298
.......	chr1:46073433-46073660(+)$1	1	7	14	13.3684
..)))))	chr10:70333644-70333911(+)$1	1	202	209	13.1052
.....))	chr6:161469719-161470046(+)$1	1	305	312	17.2280
..((((.	chr7:91631474-91631749(+)$1	1	7	14	13.1052
))....)	chr1:111494799-111495117(-)$1	1	80	87	13.6315
.......	chr1:111490755-111491014(-)$1	1	6	13	13.3684
(.....(	chr8:53569095-53569403(-)$1	1	65	72	17.2280
(......	chr3:42679728-42679994(+)$1	1	37	44	17.2280
.......	chr2:170493740-170494003(+)$1	1	64	71	17.2280
(((((..	chr2:152319594-152319919(+)$1	1	131	138	13.1052
((....)	chr2:55252344-55252637(-)$1	1	89	96	13.1929
......)	chr3:42680266-42680503(+)$1	1	53	60	17.2280
.((((((	chr1:155449336-155449573(-)$1	1	33	40	12.9298
......)	chr3:160143809-160144057(+)$1	1	132	139	17.2280
......)	chr3:42679138-42679394(+)$1	1	51	58	13.2807
.....))	chr15:40916935-40917211(+)$1	1	36	43	17.2280
......)	chr2:55253744-55254018(-)$1	1	47	54	12.7543
.......	chr1:155447776-155448047(-)$1	1	23	30	13.6315
((....(	chr10:119043418-119043721(-)$1	1	52	59	17.2280

#PSSM
A : 0.80	G : 0.10	C : 0.08	
A : 0.84	G : 0.07	U : 0.05	C : 0.03	
A : 0.89	U : 0.03	C : 0.03	G : 0.03	
A : 0.87	C : 0.05	G : 0.05	U : 0.01	
A : 0.87	U : 0.05	C : 0.05	G : 0.01	
A : 1.00	
G : 0.94	U : 0.05	

#score	810.3333333333343
#seq	57
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_CDS_m1_run2.nuc.txt

#NT
GGGCC	chr7:100174871-100175080(-)$1	209	166	171	15.0000
gggcc	chr11:637257-637535(+)$1	278	95	100	15.0000
GGGCC	chr11:534147-534460(-)$1	313	36	41	15.0000
GGGCC	chr1:33236040-33236288(+)$1	248	56	61	15.0000
GGGCC	chr22:19711777-19712001(+)$1	224	62	67	15.0000
GGGCC	chr21:47612200-47612495(-)$1	295	227	232	15.0000
GGGCC	chr6:3259324-3259594(+)$1	270	56	61	15.0000
GGGCC	chr19:1104611-1104910(+)$1	299	56	61	15.0000
GGGCC	chr19:2425958-2426272(-)$1	314	255	260	15.0000
GGGCC	chr12:132403059-132403293(+)$1	234	29	34	15.0000
GGGCC	chr11:639288-639567(+)$1	279	36	41	15.0000
GGGCC	chr7:100171716-100171993(-)$1	277	54	59	15.0000
GGGCC	chr20:60897710-60897990(-)$1	280	22	27	15.0000
GGGCC	chr9:139904818-139905104(-)$1	286	56	61	15.0000
gggcc	chr19:47778061-47778339(+)$1	278	5	10	15.0000
GGGCC	chr3:45730811-45731099(+)$1	288	189	194	15.0000
GGGCC	chr7:128480842-128481089(+)$1	247	92	97	15.0000
GGGCC	chr22:51020657-51020956(-)$1	299	28	33	15.0000
GGGCC	chr7:100174751-100175019(-)$1	268	105	110	15.0000
GGGCC	chr17:46131916-46132230(+)$1	314	300	305	15.0000
GGGCC	chr12:132402869-132403140(+)$1	271	13	18	15.0000
GGGCC	chr16:725959-726250(+)$1	291	256	261	15.0000
GGGCC	chr11:66392569-66392798(+)$1	229	162	167	15.0000
GGGCC	chr16:28878125-28878389(+)$1	264	93	98	15.0000
GGGCC	chr10:101379863-101380186(-)$1	323	25	30	15.0000
GGGCC	chr11:557749-558004(+)$1	255	184	189	15.0000
GGGCC	chr17:79866767-79867103(-)$1	336	58	63	15.0000
gggcc	chr19:49964744-49965010(+)$1	266	89	94	15.0000
GGGCC	chr11:66392598-66392853(+)$1	255	133	138	15.0000
GGGCC	chr14:31495101-31495352(-)$1	251	44	49	15.0000
GGGCC	chr19:50434143-50434380(+)$1	237	1	6	15.0000
GGGCC	chr22:50016963-50017204(-)$1	241	165	170	15.0000
GGGCC	chr11:61197015-61197330(-)$1	315	64	69	15.0000
GGGCC	chr9:100774602-100774807(+)$1	205	154	159	15.0000
GGGCC	chr10:72503652-72503958(+)$1	306	86	91	15.0000
GGGCC	chr16:1828219-1828486(-)$1	267	60	65	15.0000
GGGCC	chr19:47778364-47778599(+)$1	235	115	120	15.0000
GGGCC	chr9:139250028-139250304(+)$1	276	123	128	15.0000
GGGCC	chr8:145693808-145694078(+)$1	270	56	61	15.0000
GGGCC	chr9:139904712-139904986(-)$1	274	8	13	15.0000
GGGCC	chr22:50016771-50017013(-)$1	242	25	30	15.0000
GGGCC	chr10:72468246-72468496(+)$1	250	128	133	15.0000
gggcc	chr19:49964846-49965122(+)$1	276	1	6	15.0000
GGGCC	chr1:226030068-226030375(-)$1	307	191	196	15.0000
gggcc	chr7:77166748-77166983(+)$1	235	81	86	15.0000
GGGCC	chr21:45735929-45736232(+)$1	303	15	20	15.0000
GGGCC	chr12:57624649-57624933(+)$1	284	162	167	15.0000
GGGCC	chrX:48814204-48814457(-)$1	253	57	62	15.0000
GGGCC	chr19:5719961-5720213(-)$1	252	234	239	15.0000
GGGCC	chr5:138629678-138629929(+)$1	251	75	80	15.0000
GGGCC	chr14:31495152-31495415(-)$1	263	10	15	15.0000
GGGCC	chr22:50873278-50873543(+)$1	265	77	82	15.0000
gggcc	chr9:140323182-140323436(+)$1	254	26	31	15.0000
GGGCC	chr11:66392690-66392931(+)$1	241	41	46	15.0000

#otherMatches

#Struct PSSM
FFF{F	chr16:89367079-89367343(-)$1	264	34	39	15.0000
GGGee	chr7:100174871-100175080(-)$1	209	166	171	15.0000
D:CCC	chr11:637257-637535(+)$1	278	95	100	15.0000
HHHHH	chr11:534147-534460(-)$1	313	36	41	15.0000
fffff	chr1:33236040-33236288(+)$1	248	56	61	15.0000
!dddd	chr22:19711777-19712001(+)$1	224	62	67	15.0000
dddcc	chr21:47612200-47612495(-)$1	295	227	232	15.0000
J:ccc	chr6:3259324-3259594(+)$1	270	56	61	15.0000
[cccf	chr19:1104611-1104910(+)$1	299	56	61	15.0000
dCCC}	chr19:2425958-2426272(-)$1	314	255	260	15.0000
A{HHH	chr12:132403059-132403293(+)$1	234	29	34	15.0000
fffff	chr11:639288-639567(+)$1	279	36	41	15.0000
iiiii	chr7:100171716-100171993(-)$1	277	54	59	15.0000
FFFhh	chr20:60897710-60897990(-)$1	280	22	27	15.0000
33ddd	chr9:139904818-139905104(-)$1	286	56	61	15.0000
GGGGG	chr19:47778061-47778339(+)$1	278	5	10	15.0000
bffff	chr3:45730811-45731099(+)$1	288	189	194	15.0000
hhhhh	chr7:128480842-128481089(+)$1	247	92	97	15.0000
2ffff	chr22:51020657-51020956(-)$1	299	28	33	15.0000
KFFFF	chr7:100174751-100175019(-)$1	268	105	110	15.0000
GGGGG	chr17:46131916-46132230(+)$1	314	300	305	15.0000
GGGGG	chr12:132402869-132403140(+)$1	271	13	18	15.0000
AYYHH	chr16:725959-726250(+)$1	291	256	261	15.0000
fffff	chr11:66392569-66392798(+)$1	229	162	167	15.0000
occc]	chr16:28878125-28878389(+)$1	264	93	98	15.0000
ggggg	chr10:101379863-101380186(-)$1	323	25	30	15.0000
eeeee	chr11:557749-558004(+)$1	255	184	189	15.0000
bb###	chr17:79866767-79867103(-)$1	336	58	63	15.0000
hhhhh	chr19:49964744-49965010(+)$1	266	89	94	15.0000
ddd]f	chr11:66392598-66392853(+)$1	255	133	138	15.0000
fffdd	chr14:31495101-31495352(-)$1	251	44	49	15.0000
eeeee	chr19:50434143-50434380(+)$1	237	1	6	15.0000
JJJJJ	chr22:50016963-50017204(-)$1	241	165	170	15.0000
CCggg	chr11:61197015-61197330(-)$1	315	64	69	15.0000
tttcc	chr9:100774602-100774807(+)$1	205	154	159	15.0000
2hhhh	chr10:72503652-72503958(+)$1	306	86	91	15.0000
eeeel	chr16:1828219-1828486(-)$1	267	60	65	15.0000
EEKKB	chr19:47778364-47778599(+)$1	235	115	120	15.0000
ggggg	chr9:139250028-139250304(+)$1	276	123	128	15.0000
eeeee	chr8:145693808-145694078(+)$1	270	56	61	15.0000
""ccc	chr9:139904712-139904986(-)$1	274	8	13	15.0000
foooo	chr22:50016771-50017013(-)$1	242	25	30	15.0000
ee[cc	chr10:72468246-72468496(+)$1	250	128	133	15.0000
ddddr	chr19:49964846-49965122(+)$1	276	1	6	15.0000
444==	chr1:226030068-226030375(-)$1	307	191	196	15.0000
ooccc	chr7:77166748-77166983(+)$1	235	81	86	15.0000
dddd3	chr21:45735929-45736232(+)$1	303	15	20	15.0000
DDccc	chr12:57624649-57624933(+)$1	284	162	167	15.0000
c]eee	chrX:48814204-48814457(-)$1	253	57	62	15.0000
YDDDD	chr19:5719961-5720213(-)$1	252	234	239	15.0000
=====	chr5:138629678-138629929(+)$1	251	75	80	15.0000
eeee:	chr14:31495152-31495415(-)$1	263	10	15	15.0000
hhhh!	chr22:50873278-50873543(+)$1	265	77	82	15.0000
GGGGG	chr9:140323182-140323436(+)$1	254	26	31	15.0000
ddd]f	chr11:66392690-66392931(+)$1	241	41	46	15.0000

#DB
(((.(	chr16:89367079-89367343(-)$1	1	34	39	15.0000
)))((	chr7:100174871-100175080(-)$1	1	166	171	15.0000
).(((	chr11:637257-637535(+)$1	1	95	100	15.0000
(((((	chr11:534147-534460(-)$1	1	36	41	15.0000
)))))	chr1:33236040-33236288(+)$1	1	56	61	15.0000
.((((	chr22:19711777-19712001(+)$1	1	62	67	15.0000
)))))	chr21:47612200-47612495(-)$1	1	227	232	15.0000
(.(((	chr6:3259324-3259594(+)$1	1	56	61	15.0000
.((((	chr19:1104611-1104910(+)$1	1	56	61	15.0000
)))).	chr19:2425958-2426272(-)$1	1	255	260	15.0000
(.(((	chr12:132403059-132403293(+)$1	1	29	34	15.0000
))(((	chr11:639288-639567(+)$1	1	36	41	15.0000
(((((	chr7:100171716-100171993(-)$1	1	54	59	15.0000
(((((	chr20:60897710-60897990(-)$1	1	22	27	15.0000
..)))	chr9:139904818-139905104(-)$1	1	56	61	15.0000
(((((	chr19:47778061-47778339(+)$1	1	5	10	15.0000
(((((	chr3:45730811-45731099(+)$1	1	189	194	15.0000
(((((	chr7:128480842-128481089(+)$1	1	92	97	15.0000
.))))	chr22:51020657-51020956(-)$1	1	28	33	15.0000
.((((	chr7:100174751-100175019(-)$1	1	105	110	15.0000
)))))	chr17:46131916-46132230(+)$1	1	300	305	15.0000
(((((	chr12:132402869-132403140(+)$1	1	13	18	15.0000
)..))	chr16:725959-726250(+)$1	1	256	261	15.0000
)))))	chr11:66392569-66392798(+)$1	1	162	167	15.0000
.))).	chr16:28878125-28878389(+)$1	1	93	98	15.0000
(((((	chr10:101379863-101380186(-)$1	1	25	30	15.0000
(((((	chr11:557749-558004(+)$1	1	184	189	15.0000
((...	chr17:79866767-79867103(-)$1	1	58	63	15.0000
(((((	chr19:49964744-49965010(+)$1	1	89	94	15.0000
))).)	chr11:66392598-66392853(+)$1	1	133	138	15.0000
)))))	chr14:31495101-31495352(-)$1	1	44	49	15.0000
(((((	chr19:50434143-50434380(+)$1	1	1	6	15.0000
)))))	chr22:50016963-50017204(-)$1	1	165	170	15.0000
(((((	chr11:61197015-61197330(-)$1	1	64	69	15.0000
...))	chr9:100774602-100774807(+)$1	1	154	159	15.0000
.))))	chr10:72503652-72503958(+)$1	1	86	91	15.0000
((((.	chr16:1828219-1828486(-)$1	1	60	65	15.0000
((..(	chr19:47778364-47778599(+)$1	1	115	120	15.0000
)))))	chr9:139250028-139250304(+)$1	1	123	128	15.0000
)))))	chr8:145693808-145694078(+)$1	1	56	61	15.0000
..(((	chr9:139904712-139904986(-)$1	1	8	13	15.0000
(....	chr22:50016771-50017013(-)$1	1	25	30	15.0000
((.((	chr10:72468246-72468496(+)$1	1	128	133	15.0000
((((.	chr19:49964846-49965122(+)$1	1	1	6	15.0000
...))	chr1:226030068-226030375(-)$1	1	191	196	15.0000
..)))	chr7:77166748-77166983(+)$1	1	81	86	15.0000
)))).	chr21:45735929-45736232(+)$1	1	15	20	15.0000
(((((	chr12:57624649-57624933(+)$1	1	162	167	15.0000
).)))	chrX:48814204-48814457(-)$1	1	57	62	15.0000
.))))	chr19:5719961-5720213(-)$1	1	234	239	15.0000
(((((	chr5:138629678-138629929(+)$1	1	75	80	15.0000
)))).	chr14:31495152-31495415(-)$1	1	10	15	15.0000
((((.	chr22:50873278-50873543(+)$1	1	77	82	15.0000
(((((	chr9:140323182-140323436(+)$1	1	26	31	15.0000
))).)	chr11:66392690-66392931(+)$1	1	41	46	15.0000

#PSSM
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
G : 0.89	g : 0.10	
C : 0.89	c : 0.10	
C : 0.89	c : 0.10	

#score	825.0000000000001
#seq	55
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_transcript_m1_run1.nuc.txt

#NT
uuuu	chr1:168013724-168013991(+)$1	267	22	26	12.0000
UUUU	chr6:64395568-64395779(+)$1	211	16	20	12.0000
UUUU	chr14:75497220-75497476(-)$1	256	37	41	12.0000
UUUU	chr6:33164168-33164437(-)$1	269	27	31	12.0000
UUUU	chr12:96707013-96707259(-)$1	246	1	5	12.0000
UUUU	chr12:80238986-80239296(-)$1	310	42	46	12.0000
UUUU	chr4:39322052-39322330(-)$1	278	0	4	12.0000
UUUU	chr2:232576004-232576230(+)$1	226	45	49	12.0000
UUUU	chr16:20781333-20781593(+)$1	260	67	71	12.0000
uuuu	chr5:131972739-131972983(+)$1	244	0	4	12.0000
UUUU	chr5:179153586-179153841(+)$1	255	64	68	12.0000
UUUU	chr9:71844030-71844253(+)$1	223	2	6	12.0000
UUUU	chr9:125652497-125652811(-)$1	314	208	212	12.0000
UUUU	chr5:55247671-55247887(-)$1	216	100	104	12.0000
UUUU	chr6:79700484-79700720(-)$1	236	5	9	12.0000
UUUU	chr8:95547052-95547336(-)$1	284	52	56	12.0000
UUUU	chr2:42528388-42528602(+)$1	214	194	198	12.0000
UUUU	chr14:58925147-58925361(+)$1	214	27	31	12.0000
UUUU	chr17:78298752-78299008(+)$1	256	10	14	12.0000
UUUU	chr16:70301464-70301693(-)$1	229	143	147	12.0000
UUUU	chr2:192228353-192228573(+)$1	220	2	6	12.0000
UUUU	chr18:33736497-33736717(+)$1	220	43	47	12.0000
UUUU	chr1:52293405-52293640(-)$1	235	82	86	12.0000
UUUU	chr4:151752926-151753175(-)$1	249	5	9	12.0000
Uuuu	chr12:80169284-80169580(-)$1	296	11	15	12.0000
UUUU	chr13:20580568-20580827(+)$1	259	122	126	12.0000
UUUU	chr8:98725792-98726035(+)$1	243	35	39	12.0000
UUUU	chr13:79939611-79939868(-)$1	257	0	4	12.0000
UUUU	chr9:127998784-127999060(-)$1	276	238	242	12.0000
UUUU	chr2:44170914-44171132(-)$1	218	33	37	12.0000
UUUU	chr15:35189004-35189264(-)$1	260	74	78	12.0000
UUUU	chr7:87195315-87195571(-)$1	256	81	85	12.0000
UUUU	chr18:52608122-52608409(-)$1	287	76	80	12.0000
UUUU	chr1:114165445-114165718(+)$1	273	73	77	12.0000
UUUU	chr3:20019729-20020004(+)$1	275	53	57	12.0000
UUUU	chr12:103232711-103232944(-)$1	233	195	199	12.0000
UUUU	chr21:40587073-40587344(-)$1	271	20	24	12.0000
UUUU	chr10:114190523-114190766(-)$1	243	88	92	12.0000
UUUU	chr12:123036093-123036342(+)$1	249	119	123	12.0000
UUUU	chr20:8678283-8678529(+)$1	246	197	201	12.0000
UUUU	chr14:21702057-21702333(-)$1	276	89	93	12.0000
UUUU	chr1:92754594-92754807(-)$1	213	93	97	12.0000
UUUU	chr6:7595158-7595378(+)$1	220	83	87	12.0000
UUUU	chr4:83774622-83774870(-)$1	248	5	9	12.0000
UUUU	chr3:138456461-138456683(-)$1	222	103	107	12.0000
UUUU	chr7:91667883-91668148(+)$1	265	7	11	12.0000
UUUU	chr2:99992830-99993166(+)$1	336	276	280	12.0000
UUUU	chr9:108226465-108226718(+)$1	253	27	31	12.0000
UUUU	chr1:19479887-19480096(-)$1	209	34	38	12.0000
UUUU	chr2:114210615-114210848(+)$1	233	12	16	12.0000
UUUU	chr6:35837451-35837716(-)$1	265	14	18	12.0000
UUUU	chrX:108902566-108902811(-)$1	245	27	31	12.0000
UUUU	chr22:26877671-26878061(-)$1	390	63	67	12.0000
UUUU	chr4:54249876-54250143(+)$1	267	36	40	12.0000
UUUU	chr11:17352364-17352627(+)$1	263	57	61	12.0000
UUUU	chr2:44145399-44145633(-)$1	234	36	40	12.0000
UUUU	chrY:14836956-14837259(+)$1	303	52	56	12.0000
UUUU	chr2:183593204-183593435(+)$1	231	1	5	12.0000
UUUU	chr20:61524922-61525157(-)$1	235	175	179	12.0000
UUUU	chr12:104516981-104517300(-)$1	319	33	37	12.0000
uuuu	chr7:32914497-32914778(-)$1	281	190	194	12.0000
UUUU	chr5:43298794-43299016(-)$1	222	23	27	12.0000
UUUU	chr17:680006-680318(-)$1	312	77	81	12.0000
UUUU	chr14:45577582-45577824(+)$1	242	11	15	12.0000
UUUU	chr13:41826984-41827233(-)$1	249	55	59	12.0000
UUUU	chr9:2804335-2804563(-)$1	228	23	27	12.0000
UUUU	chr2:136505741-136505976(+)$1	235	6	10	12.0000
UUUU	chr6:89601446-89601725(-)$1	279	53	57	12.0000
UUUU	chr2:11367413-11367624(-)$1	211	55	59	12.0000
UUUU	chr10:32326081-32326286(-)$1	205	121	125	12.0000
UUUU	chr10:24810610-24810895(+)$1	285	61	65	12.0000
UUUU	chr6:126211687-126212012(+)$1	325	24	28	12.0000
UUUU	chr6:56350103-56350356(-)$1	253	18	22	12.0000
UUUU	chr2:191109572-191109795(-)$1	223	90	94	12.0000
UUUU	chr4:83796818-83797044(-)$1	226	20	24	12.0000
UUUU	chr3:25660046-25660257(-)$1	211	80	84	12.0000
uuuu	chr5:150110561-150110812(-)$1	251	57	61	12.0000
UUUU	chr6:137519336-137519707(-)$1	371	9	13	12.0000
uuuu	chr12:56510867-56511076(+)$1	209	55	59	12.0000
UUUU	chr12:57691729-57692013(-)$1	284	32	36	12.0000
UUUU	chr8:9618933-9619231(+)$1	298	35	39	12.0000
UUUU	chr2:86709053-86709302(+)$1	249	20	24	12.0000
UUUU	chr12:95694038-95694385(+)$1	347	272	276	12.0000
UUUU	chr18:9530809-9531041(+)$1	232	0	4	12.0000
UUUU	chr2:198262730-198262940(-)$1	210	19	23	12.0000
UUUU	chr20:40045320-40045533(-)$1	213	42	46	12.0000
UUUU	chr1:234546090-234546326(-)$1	236	40	44	12.0000
UUUU	chr14:31404350-31404608(-)$1	258	0	4	12.0000
UUUU	chr5:33453388-33453616(+)$1	228	156	160	12.0000
UUUU	chr17:27000341-27000579(+)$1	238	15	19	12.0000
UUUU	chr17:67273759-67274084(-)$1	325	55	59	12.0000
UUUU	chrY:21755320-21755583(+)$1	263	251	255	12.0000
UUUU	chr2:63169752-63169965(+)$1	213	46	50	12.0000
UUUU	chr2:39283871-39284107(-)$1	236	27	31	12.0000

#otherMatches

#Struct PSSM
eeee	chr11:16769539-16769775(+)$1	236	27	31	12.0000
B{GG	chr1:168013724-168013991(+)$1	267	22	26	12.0000
GGGG	chr6:64395568-64395779(+)$1	211	16	20	12.0000
JJJJ	chr14:75497220-75497476(-)$1	256	37	41	12.0000
::::	chr6:33164168-33164437(-)$1	269	27	31	12.0000
FFFF	chr12:96707013-96707259(-)$1	246	1	5	12.0000
&&ee	chr12:80238986-80239296(-)$1	310	42	46	12.0000
::::	chr4:39322052-39322330(-)$1	278	0	4	12.0000
gggg	chr2:232576004-232576230(+)$1	226	45	49	12.0000
dd33	chr16:20781333-20781593(+)$1	260	67	71	12.0000
::::	chr5:131972739-131972983(+)$1	244	0	4	12.0000
c[ee	chr5:179153586-179153841(+)$1	255	64	68	12.0000
::::	chr9:71844030-71844253(+)$1	223	2	6	12.0000
JJJJ	chr9:125652497-125652811(-)$1	314	208	212	12.0000
eeee	chr5:55247671-55247887(-)$1	216	100	104	12.0000
hhhh	chr6:79700484-79700720(-)$1	236	5	9	12.0000
EEEE	chr8:95547052-95547336(-)$1	284	52	56	12.0000
DDDD	chr2:42528388-42528602(+)$1	214	194	198	12.0000
dhhh	chr14:58925147-58925361(+)$1	214	27	31	12.0000
eeee	chr17:78298752-78299008(+)$1	256	10	14	12.0000
]fff	chr16:70301464-70301693(-)$1	229	143	147	12.0000
::::	chr2:192228353-192228573(+)$1	220	2	6	12.0000
====	chr18:33736497-33736717(+)$1	220	43	47	12.0000
eeee	chr1:52293405-52293640(-)$1	235	82	86	12.0000
::::	chr4:151752926-151753175(-)$1	249	5	9	12.0000
!!bb	chr12:80169284-80169580(-)$1	296	11	15	12.0000
:ggg	chr13:20580568-20580827(+)$1	259	122	126	12.0000
hhh:	chr8:98725792-98726035(+)$1	243	35	39	12.0000
::::	chr13:79939611-79939868(-)$1	257	0	4	12.0000
dd!!	chr9:127998784-127999060(-)$1	276	238	242	12.0000
C:ii	chr2:44170914-44171132(-)$1	218	33	37	12.0000
RRRR	chr15:35189004-35189264(-)$1	260	74	78	12.0000
4444	chr7:87195315-87195571(-)$1	256	81	85	12.0000
JJJJ	chr18:52608122-52608409(-)$1	287	76	80	12.0000
hhhh	chr1:114165445-114165718(+)$1	273	73	77	12.0000
::::	chr3:20019729-20020004(+)$1	275	53	57	12.0000
:::d	chr12:103232711-103232944(-)$1	233	195	199	12.0000
====	chr21:40587073-40587344(-)$1	271	20	24	12.0000
====	chr10:114190523-114190766(-)$1	243	88	92	12.0000
oooo	chr12:123036093-123036342(+)$1	249	119	123	12.0000
dd!!	chr20:8678283-8678529(+)$1	246	197	201	12.0000
hhhh	chr14:21702057-21702333(-)$1	276	89	93	12.0000
lllc	chr1:92754594-92754807(-)$1	213	93	97	12.0000
hh::	chr6:7595158-7595378(+)$1	220	83	87	12.0000
::dd	chr4:83774622-83774870(-)$1	248	5	9	12.0000
J::f	chr3:138456461-138456683(-)$1	222	103	107	12.0000
FFFF	chr7:91667883-91668148(+)$1	265	7	11	12.0000
eeee	chr2:99992830-99993166(+)$1	336	276	280	12.0000
emmm	chr9:108226465-108226718(+)$1	253	27	31	12.0000
eeeo	chr1:19479887-19480096(-)$1	209	34	38	12.0000
mmmb	chr2:114210615-114210848(+)$1	233	12	16	12.0000
IIII	chr6:35837451-35837716(-)$1	265	14	18	12.0000
d444	chrX:108902566-108902811(-)$1	245	27	31	12.0000
FFFF	chr22:26877671-26878061(-)$1	390	63	67	12.0000
gggg	chr4:54249876-54250143(+)$1	267	36	40	12.0000
ooof	chr11:17352364-17352627(+)$1	263	57	61	12.0000
gggg	chr2:44145399-44145633(-)$1	234	36	40	12.0000
zzzz	chrY:14836956-14837259(+)$1	303	52	56	12.0000
::::	chr2:183593204-183593435(+)$1	231	1	5	12.0000
====	chr20:61524922-61525157(-)$1	235	175	179	12.0000
hhh:	chr12:104516981-104517300(-)$1	319	33	37	12.0000
::::	chr7:32914497-32914778(-)$1	281	190	194	12.0000
ffff	chr5:43298794-43299016(-)$1	222	23	27	12.0000
hhh[	chr17:680006-680318(-)$1	312	77	81	12.0000
KKBB	chr14:45577582-45577824(+)$1	242	11	15	12.0000
::::	chr13:41826984-41827233(-)$1	249	55	59	12.0000
C{DD	chr9:2804335-2804563(-)$1	228	23	27	12.0000
::DD	chr2:136505741-136505976(+)$1	235	6	10	12.0000
((((	chr6:89601446-89601725(-)$1	279	53	57	12.0000
oooo	chr2:11367413-11367624(-)$1	211	55	59	12.0000
GG}D	chr10:32326081-32326286(-)$1	205	121	125	12.0000
NNNN	chr10:24810610-24810895(+)$1	285	61	65	12.0000
gggg	chr6:126211687-126212012(+)$1	325	24	28	12.0000
oobb	chr6:56350103-56350356(-)$1	253	18	22	12.0000
f===	chr2:191109572-191109795(-)$1	223	90	94	12.0000
mmmb	chr4:83796818-83797044(-)$1	226	20	24	12.0000
====	chr3:25660046-25660257(-)$1	211	80	84	12.0000
HHHH	chr5:150110561-150110812(-)$1	251	57	61	12.0000
::::	chr6:137519336-137519707(-)$1	371	9	13	12.0000
ffff	chr12:56510867-56511076(+)$1	209	55	59	12.0000
2ggg	chr12:57691729-57692013(-)$1	284	32	36	12.0000
22ee	chr8:9618933-9619231(+)$1	298	35	39	12.0000
::ff	chr2:86709053-86709302(+)$1	249	20	24	12.0000
JJJJ	chr12:95694038-95694385(+)$1	347	272	276	12.0000
::::	chr18:9530809-9531041(+)$1	232	0	4	12.0000
EEEE	chr2:198262730-198262940(-)$1	210	19	23	12.0000
gg!!	chr20:40045320-40045533(-)$1	213	42	46	12.0000
qqqq	chr1:234546090-234546326(-)$1	236	40	44	12.0000
::::	chr14:31404350-31404608(-)$1	258	0	4	12.0000
tttt	chr5:33453388-33453616(+)$1	228	156	160	12.0000
dd[b	chr17:27000341-27000579(+)$1	238	15	19	12.0000
ffff	chr17:67273759-67274084(-)$1	325	55	59	12.0000
FFFF	chrY:21755320-21755583(+)$1	263	251	255	12.0000
qqqq	chr2:63169752-63169965(+)$1	213	46	50	12.0000
JJJJ	chr2:39283871-39284107(-)$1	236	27	31	12.0000

#DB
))))	chr11:16769539-16769775(+)$1	1	27	31	12.0000
(.((	chr1:168013724-168013991(+)$1	1	22	26	12.0000
((((	chr6:64395568-64395779(+)$1	1	16	20	12.0000
((((	chr14:75497220-75497476(-)$1	1	37	41	12.0000
....	chr6:33164168-33164437(-)$1	1	27	31	12.0000
((((	chr12:96707013-96707259(-)$1	1	1	5	12.0000
..((	chr12:80238986-80239296(-)$1	1	42	46	12.0000
....	chr4:39322052-39322330(-)$1	1	0	4	12.0000
((((	chr2:232576004-232576230(+)$1	1	45	49	12.0000
))..	chr16:20781333-20781593(+)$1	1	67	71	12.0000
....	chr5:131972739-131972983(+)$1	1	0	4	12.0000
(.((	chr5:179153586-179153841(+)$1	1	64	68	12.0000
....	chr9:71844030-71844253(+)$1	1	2	6	12.0000
))))	chr9:125652497-125652811(-)$1	1	208	212	12.0000
))))	chr5:55247671-55247887(-)$1	1	100	104	12.0000
((((	chr6:79700484-79700720(-)$1	1	5	9	12.0000
((((	chr8:95547052-95547336(-)$1	1	52	56	12.0000
))))	chr2:42528388-42528602(+)$1	1	194	198	12.0000
((((	chr14:58925147-58925361(+)$1	1	27	31	12.0000
((((	chr17:78298752-78299008(+)$1	1	10	14	12.0000
.)))	chr16:70301464-70301693(-)$1	1	143	147	12.0000
....	chr2:192228353-192228573(+)$1	1	2	6	12.0000
))))	chr18:33736497-33736717(+)$1	1	43	47	12.0000
))))	chr1:52293405-52293640(-)$1	1	82	86	12.0000
....	chr4:151752926-151753175(-)$1	1	5	9	12.0000
..((	chr12:80169284-80169580(-)$1	1	11	15	12.0000
.(((	chr13:20580568-20580827(+)$1	1	122	126	12.0000
))).	chr8:98725792-98726035(+)$1	1	35	39	12.0000
....	chr13:79939611-79939868(-)$1	1	0	4	12.0000
((..	chr9:127998784-127999060(-)$1	1	238	242	12.0000
(.((	chr2:44170914-44171132(-)$1	1	33	37	12.0000
....	chr15:35189004-35189264(-)$1	1	74	78	12.0000
....	chr7:87195315-87195571(-)$1	1	81	85	12.0000
((((	chr18:52608122-52608409(-)$1	1	76	80	12.0000
((((	chr1:114165445-114165718(+)$1	1	73	77	12.0000
....	chr3:20019729-20020004(+)$1	1	53	57	12.0000
...(	chr12:103232711-103232944(-)$1	1	195	199	12.0000
((((	chr21:40587073-40587344(-)$1	1	20	24	12.0000
((((	chr10:114190523-114190766(-)$1	1	88	92	12.0000
....	chr12:123036093-123036342(+)$1	1	119	123	12.0000
((..	chr20:8678283-8678529(+)$1	1	197	201	12.0000
((((	chr14:21702057-21702333(-)$1	1	89	93	12.0000
...)	chr1:92754594-92754807(-)$1	1	93	97	12.0000
))..	chr6:7595158-7595378(+)$1	1	83	87	12.0000
..((	chr4:83774622-83774870(-)$1	1	5	9	12.0000
(..(	chr3:138456461-138456683(-)$1	1	103	107	12.0000
((((	chr7:91667883-91668148(+)$1	1	7	11	12.0000
))))	chr2:99992830-99993166(+)$1	1	276	280	12.0000
(...	chr9:108226465-108226718(+)$1	1	27	31	12.0000
(((.	chr1:19479887-19480096(-)$1	1	34	38	12.0000
...)	chr2:114210615-114210848(+)$1	1	12	16	12.0000
((((	chr6:35837451-35837716(-)$1	1	14	18	12.0000
)...	chrX:108902566-108902811(-)$1	1	27	31	12.0000
((((	chr22:26877671-26878061(-)$1	1	63	67	12.0000
))))	chr4:54249876-54250143(+)$1	1	36	40	12.0000
...)	chr11:17352364-17352627(+)$1	1	57	61	12.0000
((((	chr2:44145399-44145633(-)$1	1	36	40	12.0000
....	chrY:14836956-14837259(+)$1	1	52	56	12.0000
....	chr2:183593204-183593435(+)$1	1	1	5	12.0000
((((	chr20:61524922-61525157(-)$1	1	175	179	12.0000
))).	chr12:104516981-104517300(-)$1	1	33	37	12.0000
....	chr7:32914497-32914778(-)$1	1	190	194	12.0000
((((	chr5:43298794-43299016(-)$1	1	23	27	12.0000
(((.	chr17:680006-680318(-)$1	1	77	81	12.0000
..((	chr14:45577582-45577824(+)$1	1	11	15	12.0000
....	chr13:41826984-41827233(-)$1	1	55	59	12.0000
(.((	chr9:2804335-2804563(-)$1	1	23	27	12.0000
..((	chr2:136505741-136505976(+)$1	1	6	10	12.0000
....	chr6:89601446-89601725(-)$1	1	53	57	12.0000
....	chr2:11367413-11367624(-)$1	1	55	59	12.0000
)).)	chr10:32326081-32326286(-)$1	1	121	125	12.0000
....	chr10:24810610-24810895(+)$1	1	61	65	12.0000
((((	chr6:126211687-126212012(+)$1	1	24	28	12.0000
..))	chr6:56350103-56350356(-)$1	1	18	22	12.0000
)(((	chr2:191109572-191109795(-)$1	1	90	94	12.0000
...)	chr4:83796818-83797044(-)$1	1	20	24	12.0000
((((	chr3:25660046-25660257(-)$1	1	80	84	12.0000
((((	chr5:150110561-150110812(-)$1	1	57	61	12.0000
....	chr6:137519336-137519707(-)$1	1	9	13	12.0000
((((	chr12:56510867-56511076(+)$1	1	55	59	12.0000
.)))	chr12:57691729-57692013(-)$1	1	32	36	12.0000
..))	chr8:9618933-9619231(+)$1	1	35	39	12.0000
..((	chr2:86709053-86709302(+)$1	1	20	24	12.0000
))))	chr12:95694038-95694385(+)$1	1	272	276	12.0000
....	chr18:9530809-9531041(+)$1	1	0	4	12.0000
((((	chr2:198262730-198262940(-)$1	1	19	23	12.0000
((..	chr20:40045320-40045533(-)$1	1	42	46	12.0000
....	chr1:234546090-234546326(-)$1	1	40	44	12.0000
....	chr14:31404350-31404608(-)$1	1	0	4	12.0000
....	chr5:33453388-33453616(+)$1	1	156	160	12.0000
((.(	chr17:27000341-27000579(+)$1	1	15	19	12.0000
))))	chr17:67273759-67274084(-)$1	1	55	59	12.0000
))))	chrY:21755320-21755583(+)$1	1	251	255	12.0000
....	chr2:63169752-63169965(+)$1	1	46	50	12.0000
((((	chr2:39283871-39284107(-)$1	1	27	31	12.0000

#PSSM
U : 0.93	u : 0.06	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	
U : 0.92	u : 0.07	

#score	1140.0000000000002
#seq	95
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_UTR_m3_run2.nuc.txt

#NT
GUGGAGGUG	chr17:37617680-37617971(+)$1	291	122	131	15.8636
GGUGAGGCG	chr17:80193762-80194054(+)$1	292	95	104	15.6363
UGGGAGGAG	chr20:43029850-43030149(+)$1	299	72	81	14.0454
GGGGAGAGG	chr16:70696474-70696723(-)$1	249	101	110	14.4999
GAGGAGCCG	chr16:28847471-28847734(+)$1	263	5	14	14.0454
GUGGAGGUG	chr11:130011740-130012027(+)$1	287	223	232	15.8636
GUGGAGGUG	chr19:51856276-51856562(-)$1	286	66	75	15.8636
gaggaggag	chr4:174253031-174253318(-)$1	287	25	34	16.0909
GGGGAGGCG	chr12:26985874-26986096(-)$1	222	111	120	20.1818
GGGGCGGCG	chr16:30087575-30087857(+)$1	282	82	91	15.6363
GGGGAGGGC	chr1:40041677-40041927(-)$1	250	67	76	14.2727
GAGGAGGCU	chr3:48456292-48456542(-)$1	250	34	43	13.8181
GGGGAGGAG	chr17:75484225-75484478(+)$1	253	193	202	18.5909
GGGGAGGCU	chr9:116997777-116997990(+)$1	213	40	49	16.3181
GAGGAGGCG	chr9:131451536-131451809(+)$1	273	203	212	17.6818
GGGGAGGCG	chr12:26985754-26986012(-)$1	258	27	36	20.1818
GGGGAAGCG	chr17:79803647-79803853(-)$1	206	174	183	15.6363
GGGAAGGAG	chr9:117073367-117073627(+)$1	260	129	138	14.0454
GGGGAgggg	chr19:51857296-51857633(-)$1	337	244	253	18.3636
GGGGAGGUG	chr12:57504877-57505160(-)$1	283	140	149	18.5909
GGGGAGUCG	chr22:41487695-41487988(+)$1	293	202	211	16.3181

#otherMatches

#Struct PSSM
eeee::::i	chr21:46915219-46915445(+)$1	226	88	97	16.5454
444ccc]hh	chr17:37617680-37617971(+)$1	291	122	131	15.8636
e:::BB{CC	chr17:80193762-80194054(+)$1	292	95	104	15.6363
iiiiiiii5	chr20:43029850-43030149(+)$1	299	72	81	14.0454
eee[a!!ee	chr16:70696474-70696723(-)$1	249	101	110	14.4999
mmccc:bb[	chr16:28847471-28847734(+)$1	263	5	14	14.0454
eeee]dddd	chr11:130011740-130012027(+)$1	287	223	232	15.8636
[bb[ccc[a	chr19:51856276-51856562(-)$1	286	66	75	15.8636
RRRREEEEE	chr4:174253031-174253318(-)$1	287	25	34	16.0909
========[	chr12:26985874-26986096(-)$1	222	111	120	20.1818
eeeeemmmm	chr16:30087575-30087857(+)$1	282	82	91	15.6363
GGGG:EEEE	chr1:40041677-40041927(-)$1	250	67	76	14.2727
dddd[dddd	chr3:48456292-48456542(-)$1	250	34	43	13.8181
mmeeeee]b	chr17:75484225-75484478(+)$1	253	193	202	18.5909
ffcccmmmm	chr9:116997777-116997990(+)$1	213	40	49	16.3181
C}HHHHHHH	chr9:131451536-131451809(+)$1	273	203	212	17.6818
========[	chr12:26985754-26986012(-)$1	258	27	36	20.1818
GGccc[ccc	chr17:79803647-79803853(-)$1	206	174	183	15.6363
eeee[bbee	chr9:117073367-117073627(+)$1	260	129	138	14.0454
G______EE	chr19:51857296-51857633(-)$1	337	244	253	18.3636
:::::ccc[	chr12:57504877-57505160(-)$1	283	140	149	18.5909
FFFF~~~~D	chr22:41487695-41487988(+)$1	293	202	211	16.3181

#DB
))))....(	chr21:46915219-46915445(+)$1	1	88	97	16.5454
...))).))	chr17:37617680-37617971(+)$1	1	122	131	15.8636
)...((.((	chr17:80193762-80194054(+)$1	1	95	104	15.6363
)))))))).	chr20:43029850-43030149(+)$1	1	72	81	14.0454
(((.(..((	chr16:70696474-70696723(-)$1	1	101	110	14.4999
..))).((.	chr16:28847471-28847734(+)$1	1	5	14	14.0454
)))).))))	chr11:130011740-130012027(+)$1	1	223	232	15.8636
.((.(((.(	chr19:51856276-51856562(-)$1	1	66	75	15.8636
....(((((	chr4:174253031-174253318(-)$1	1	25	34	16.0909
((((((((.	chr12:26985874-26986096(-)$1	1	111	120	20.1818
(((((....	chr16:30087575-30087857(+)$1	1	82	91	15.6363
((((.((((	chr1:40041677-40041927(-)$1	1	67	76	14.2727
((((.((((	chr3:48456292-48456542(-)$1	1	34	43	13.8181
..))))).)	chr17:75484225-75484478(+)$1	1	193	202	18.5909
(((((....	chr9:116997777-116997990(+)$1	1	40	49	16.3181
).)))))))	chr9:131451536-131451809(+)$1	1	203	212	17.6818
((((((((.	chr12:26985754-26986012(-)$1	1	27	36	20.1818
))(((.(((	chr17:79803647-79803853(-)$1	1	174	183	15.6363
((((.((((	chr9:117073367-117073627(+)$1	1	129	138	14.0454
)......))	chr19:51857296-51857633(-)$1	1	244	253	18.3636
.....(((.	chr12:57504877-57505160(-)$1	1	140	149	18.5909
))))....)	chr22:41487695-41487988(+)$1	1	202	211	16.3181

#PSSM
G : 0.90	U : 0.04	g : 0.04	
G : 0.68	U : 0.13	A : 0.13	a : 0.04	
G : 0.90	U : 0.04	g : 0.04	
G : 0.90	g : 0.04	A : 0.04	
A : 0.90	a : 0.04	C : 0.04	
G : 0.86	g : 0.09	A : 0.04	
G : 0.72	C : 0.09	g : 0.09	A : 0.04	U : 0.04	
C : 0.50	U : 0.18	A : 0.13	G : 0.09	a : 0.04	g : 0.04	
G : 0.77	g : 0.09	U : 0.09	C : 0.04	

#score	358.090909090909
#seq	22
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_CDS_m2_run2.nuc.txt

#NT
AGA	chr8:94747774-94748010(-)$1	236	14	17	9.0000
AGA	chr1:16255362-16255598(+)$1	236	24	27	9.0000
AGA	chr1:16256852-16257091(+)$1	239	34	37	9.0000
AGA	chr17:27005815-27006082(+)$1	267	46	49	9.0000
AGA	chr1:16256388-16256638(+)$1	250	26	29	9.0000
AGA	chr5:71492048-71492300(+)$1	252	96	99	9.0000
AGA	chr9:134351607-134351899(+)$1	292	32	35	9.0000
AGA	chr8:94747717-94747931(-)$1	214	37	40	9.0000
AGA	chr5:71491920-71492210(+)$1	290	8	11	9.0000
AGA	chr10:120818643-120818914(-)$1	271	67	70	9.0000
AGA	chrX:53613654-53613922(-)$1	268	6	9	9.0000
AGA	chr22:23523585-23523820(+)$1	235	79	82	9.0000
AGA	chr9:134350836-134351116(+)$1	280	18	21	9.0000
AGA	chr19:49377468-49377731(+)$1	263	62	65	9.0000
AGA	chr16:89347152-89347422(-)$1	270	31	34	9.0000
AGA	chr16:89348751-89348973(-)$1	222	13	16	9.0000
AGA	chr12:6709369-6709613(-)$1	244	85	88	9.0000
AGA	chr1:245026814-245027072(-)$1	258	19	22	9.0000
AGA	chr5:71493934-71494170(+)$1	236	5	8	9.0000
AGA	chr16:89346897-89347146(-)$1	249	150	153	9.0000
AGA	chr5:71491431-71491669(+)$1	238	32	35	9.0000
AGA	chr16:89348127-89348411(-)$1	284	6	9	9.0000
AGA	chr14:65241808-65242135(-)$1	327	12	15	9.0000
AGA	chr16:31198007-31198228(+)$1	221	160	163	9.0000
AGA	chr19:2270320-2270598(+)$1	278	158	161	9.0000
AGA	chr11:62297228-62297547(-)$1	319	4	7	9.0000
AGA	chr11:62291007-62291233(-)$1	226	69	72	9.0000
AGA	chr8:94748457-94748690(-)$1	233	198	201	9.0000
AGA	chr17:27023909-27024175(+)$1	266	10	13	9.0000
AGA	chr7:100732471-100732737(+)$1	266	85	88	9.0000
AGA	chr1:16257502-16257777(+)$1	275	16	19	9.0000
AGA	chr16:89348258-89348499(-)$1	241	48	51	9.0000
AGA	chr6:7231983-7232234(+)$1	251	29	32	9.0000
AGA	chr19:39959300-39959602(+)$1	302	23	26	9.0000
AGA	chr16:89350802-89351075(-)$1	273	122	125	9.0000
AGA	chr5:71490576-71490832(+)$1	256	50	53	9.0000
AGA	chr10:71148852-71149104(+)$1	252	28	31	9.0000
AGA	chr17:20799074-20799334(+)$1	260	17	20	9.0000
AGA	chr12:133353498-133353772(-)$1	274	122	125	9.0000
AGA	chr10:129902542-129902784(-)$1	242	3	6	9.0000
AGA	chr17:27004701-27004934(+)$1	233	60	63	9.0000
AGA	chr16:89346585-89346860(-)$1	275	63	66	9.0000
AGA	chr19:55558594-55558900(+)$1	306	32	35	9.0000
AGA	chr17:8451861-8452163(-)$1	302	131	134	9.0000
AGA	chr8:94745984-94746207(-)$1	223	19	22	9.0000
AGA	chr8:94746820-94747051(-)$1	231	5	8	9.0000
AGA	chr8:94752623-94752867(-)$1	244	53	56	9.0000
AGA	chr8:144999533-144999816(-)$1	283	14	17	9.0000
AGA	chr5:71490506-71490752(+)$1	246	13	16	9.0000
AGA	chr8:144994942-144995174(-)$1	232	43	46	9.0000
AGA	chr11:62294969-62295212(-)$1	243	13	16	9.0000
AGA	chr11:62292083-62292350(-)$1	267	34	37	9.0000
AGA	chr11:62300265-62300547(-)$1	282	76	79	9.0000
AGA	chr10:120801690-120801927(-)$1	237	1	4	9.0000
AGA	chr11:71724803-71725026(-)$1	223	22	25	9.0000
AGA	chr2:54851840-54852177(+)$1	337	9	12	9.0000
AGA	chr11:62297644-62297878(-)$1	234	6	9	9.0000
AGA	chr8:94748157-94748470(-)$1	313	38	41	9.0000
AGA	chr17:27008802-27009067(+)$1	265	39	42	9.0000
AGA	chr16:89350307-89350602(-)$1	295	1	4	9.0000
AGA	chr16:89346985-89347212(-)$1	227	216	219	9.0000
AGA	chr9:134349890-134350156(+)$1	266	67	70	9.0000
AGA	chr5:71492199-71492446(+)$1	247	8	11	9.0000
AGA	chr22:36697528-36697774(-)$1	246	10	13	9.0000
AGA	chr19:11130166-11130397(+)$1	231	115	118	9.0000
AGA	chr11:62287152-62287430(-)$1	278	4	7	9.0000
AGA	chr16:89348867-89349114(-)$1	247	19	22	9.0000
AGA	chr16:89348634-89348889(-)$1	255	12	15	9.0000
AGA	chr13:108518035-108518327(-)$1	292	152	155	9.0000
AGA	chr22:36684297-36684544(-)$1	247	22	25	9.0000
AGA	chr11:71725390-71725668(-)$1	278	41	44	9.0000
AGA	chr16:89349833-89350150(-)$1	317	16	19	9.0000
AGA	chr8:94748296-94748542(-)$1	246	50	53	9.0000
AGA	chr12:125396249-125396514(-)$1	265	37	40	9.0000
AGA	chr9:133760237-133760484(+)$1	247	59	62	9.0000
AGA	chr8:144671561-144671876(-)$1	315	4	7	9.0000
AGA	chr7:1131212-1131475(-)$1	263	134	137	9.0000
AGA	chr8:94752685-94752943(-)$1	258	59	62	9.0000
AGA	chr16:87735210-87735459(-)$1	249	59	62	9.0000
AGA	chr10:71144501-71144750(+)$1	249	15	18	9.0000
AGA	chr11:71726054-71726329(-)$1	275	3	6	9.0000
AGA	chr11:62294594-62294832(-)$1	238	2	5	9.0000
AGA	chr12:6691268-6691482(-)$1	214	80	83	9.0000
AGA	chr5:71493618-71493874(+)$1	256	57	60	9.0000
AGA	chr2:96964452-96964762(-)$1	310	19	22	9.0000
AGA	chr17:17067319-17067572(+)$1	253	36	39	9.0000
AGA	chr16:89347792-89348081(-)$1	289	12	15	9.0000
AGA	chrX:153592597-153592830(-)$1	233	115	118	9.0000
AGA	chr9:139565251-139565507(+)$1	256	37	40	9.0000
AGA	chr16:89350264-89350500(-)$1	236	24	27	9.0000
aga	chr19:39138284-39138537(+)$1	253	42	45	9.0000
AGA	chr7:1132258-1132480(-)$1	222	62	65	9.0000
AGA	chr8:144991801-144992098(-)$1	297	198	201	9.0000
AGA	chr8:94747044-94747314(-)$1	270	1	4	9.0000
AGA	chr11:62294489-62294767(-)$1	278	2	5	9.0000
AGA	chr8:144672189-144672425(-)$1	236	205	208	9.0000
AGA	chr16:89347086-89347350(-)$1	264	37	40	9.0000

#otherMatches

#Struct PSSM
:::	chr11:62494204-62494470(-)$1	266	78	81	9.0000
"""	chr8:94747774-94748010(-)$1	236	14	17	9.0000
::D	chr1:16255362-16255598(+)$1	236	24	27	9.0000
EEE	chr1:16256852-16257091(+)$1	239	34	37	9.0000
{A{	chr17:27005815-27006082(+)$1	267	46	49	9.0000
uuu	chr1:16256388-16256638(+)$1	250	26	29	9.0000
+++	chr5:71492048-71492300(+)$1	252	96	99	9.0000
ff[	chr9:134351607-134351899(+)$1	292	32	35	9.0000
FFF	chr8:94747717-94747931(-)$1	214	37	40	9.0000
A::	chr5:71491920-71492210(+)$1	290	8	11	9.0000
dd!	chr10:120818643-120818914(-)$1	271	67	70	9.0000
JJJ	chrX:53613654-53613922(-)$1	268	6	9	9.0000
ddd	chr22:23523585-23523820(+)$1	235	79	82	9.0000
{AK	chr9:134350836-134351116(+)$1	280	18	21	9.0000
]hh	chr19:49377468-49377731(+)$1	263	62	65	9.0000
LBB	chr16:89347152-89347422(-)$1	270	31	34	9.0000
[a[	chr16:89348751-89348973(-)$1	222	13	16	9.0000
eee	chr12:6709369-6709613(-)$1	244	85	88	9.0000
ttt	chr1:245026814-245027072(-)$1	258	19	22	9.0000
fff	chr5:71493934-71494170(+)$1	236	5	8	9.0000
cc]	chr16:89346897-89347146(-)$1	249	150	153	9.0000
nnn	chr5:71491431-71491669(+)$1	238	32	35	9.0000
LBB	chr16:89348127-89348411(-)$1	284	6	9	9.0000
ddd	chr14:65241808-65242135(-)$1	327	12	15	9.0000
Jee	chr16:31198007-31198228(+)$1	221	160	163	9.0000
_BB	chr19:2270320-2270598(+)$1	278	158	161	9.0000
:::	chr11:62297228-62297547(-)$1	319	4	7	9.0000
"""	chr11:62291007-62291233(-)$1	226	69	72	9.0000
ppp	chr8:94748457-94748690(-)$1	233	198	201	9.0000
FFM	chr17:27023909-27024175(+)$1	266	10	13	9.0000
ccc	chr7:100732471-100732737(+)$1	266	85	88	9.0000
:::	chr1:16257502-16257777(+)$1	275	16	19	9.0000
###	chr16:89348258-89348499(-)$1	241	48	51	9.0000
cc[	chr6:7231983-7232234(+)$1	251	29	32	9.0000
ggg	chr19:39959300-39959602(+)$1	302	23	26	9.0000
ee[	chr16:89350802-89351075(-)$1	273	122	125	9.0000
dqq	chr5:71490576-71490832(+)$1	256	50	53	9.0000
cc]	chr10:71148852-71149104(+)$1	252	28	31	9.0000
eee	chr17:20799074-20799334(+)$1	260	17	20	9.0000
CC:	chr12:133353498-133353772(-)$1	274	122	125	9.0000
:::	chr10:129902542-129902784(-)$1	242	3	6	9.0000
eee	chr17:27004701-27004934(+)$1	233	60	63	9.0000
ccc	chr16:89346585-89346860(-)$1	275	63	66	9.0000
{AM	chr19:55558594-55558900(+)$1	306	32	35	9.0000
:::	chr17:8451861-8452163(-)$1	302	131	134	9.0000
+++	chr8:94745984-94746207(-)$1	223	19	22	9.0000
[dd	chr8:94746820-94747051(-)$1	231	5	8	9.0000
rrr	chr8:94752623-94752867(-)$1	244	53	56	9.0000
mmm	chr8:144999533-144999816(-)$1	283	14	17	9.0000
FFF	chr5:71490506-71490752(+)$1	246	13	16	9.0000
[bb	chr8:144994942-144995174(-)$1	232	43	46	9.0000
LLL	chr11:62294969-62295212(-)$1	243	13	16	9.0000
mmm	chr11:62292083-62292350(-)$1	267	34	37	9.0000
bbm	chr11:62300265-62300547(-)$1	282	76	79	9.0000
:::	chr10:120801690-120801927(-)$1	237	1	4	9.0000
ppp	chr11:71724803-71725026(-)$1	223	22	25	9.0000
fff	chr2:54851840-54852177(+)$1	337	9	12	9.0000
GGG	chr11:62297644-62297878(-)$1	234	6	9	9.0000
:::	chr8:94748157-94748470(-)$1	313	38	41	9.0000
qqq	chr17:27008802-27009067(+)$1	265	39	42	9.0000
GGG	chr16:89350307-89350602(-)$1	295	1	4	9.0000
mff	chr16:89346985-89347212(-)$1	227	216	219	9.0000
33e	chr9:134349890-134350156(+)$1	266	67	70	9.0000
qqq	chr5:71492199-71492446(+)$1	247	8	11	9.0000
DD{	chr22:36697528-36697774(-)$1	246	10	13	9.0000
iii	chr19:11130166-11130397(+)$1	231	115	118	9.0000
FFK	chr11:62287152-62287430(-)$1	278	4	7	9.0000
{EE	chr16:89348867-89349114(-)$1	247	19	22	9.0000
oee	chr16:89348634-89348889(-)$1	255	12	15	9.0000
2bb	chr13:108518035-108518327(-)$1	292	152	155	9.0000
ee]	chr22:36684297-36684544(-)$1	247	22	25	9.0000
dd%	chr11:71725390-71725668(-)$1	278	41	44	9.0000
www	chr16:89349833-89350150(-)$1	317	16	19	9.0000
iii	chr8:94748296-94748542(-)$1	246	50	53	9.0000
LCC	chr12:125396249-125396514(-)$1	265	37	40	9.0000
eee	chr9:133760237-133760484(+)$1	247	59	62	9.0000
EEK	chr8:144671561-144671876(-)$1	315	4	7	9.0000
999	chr7:1131212-1131475(-)$1	263	134	137	9.0000
ppp	chr8:94752685-94752943(-)$1	258	59	62	9.0000
e!!	chr16:87735210-87735459(-)$1	249	59	62	9.0000
DD:	chr10:71144501-71144750(+)$1	249	15	18	9.0000
EE:	chr11:71726054-71726329(-)$1	275	3	6	9.0000
:::	chr11:62294594-62294832(-)$1	238	2	5	9.0000
%%%	chr12:6691268-6691482(-)$1	214	80	83	9.0000
eee	chr5:71493618-71493874(+)$1	256	57	60	9.0000
bbm	chr2:96964452-96964762(-)$1	310	19	22	9.0000
E::	chr17:17067319-17067572(+)$1	253	36	39	9.0000
:::	chr16:89347792-89348081(-)$1	289	12	15	9.0000
###	chrX:153592597-153592830(-)$1	233	115	118	9.0000
fff	chr9:139565251-139565507(+)$1	256	37	40	9.0000
BB:	chr16:89350264-89350500(-)$1	236	24	27	9.0000
:::	chr19:39138284-39138537(+)$1	253	42	45	9.0000
555	chr7:1132258-1132480(-)$1	222	62	65	9.0000
rrr	chr8:144991801-144992098(-)$1	297	198	201	9.0000
:::	chr8:94747044-94747314(-)$1	270	1	4	9.0000
:::	chr11:62294489-62294767(-)$1	278	2	5	9.0000
e]b	chr8:144672189-144672425(-)$1	236	205	208	9.0000
{DD	chr16:89347086-89347350(-)$1	264	37	40	9.0000

#DB
...	chr11:62494204-62494470(-)$1	1	78	81	9.0000
...	chr8:94747774-94748010(-)$1	1	14	17	9.0000
..(	chr1:16255362-16255598(+)$1	1	24	27	9.0000
(((	chr1:16256852-16257091(+)$1	1	34	37	9.0000
.(.	chr17:27005815-27006082(+)$1	1	46	49	9.0000
...	chr1:16256388-16256638(+)$1	1	26	29	9.0000
...	chr5:71492048-71492300(+)$1	1	96	99	9.0000
((.	chr9:134351607-134351899(+)$1	1	32	35	9.0000
(((	chr8:94747717-94747931(-)$1	1	37	40	9.0000
(..	chr5:71491920-71492210(+)$1	1	8	11	9.0000
((.	chr10:120818643-120818914(-)$1	1	67	70	9.0000
(((	chrX:53613654-53613922(-)$1	1	6	9	9.0000
(((	chr22:23523585-23523820(+)$1	1	79	82	9.0000
.(.	chr9:134350836-134351116(+)$1	1	18	21	9.0000
.))	chr19:49377468-49377731(+)$1	1	62	65	9.0000
.((	chr16:89347152-89347422(-)$1	1	31	34	9.0000
.(.	chr16:89348751-89348973(-)$1	1	13	16	9.0000
)))	chr12:6709369-6709613(-)$1	1	85	88	9.0000
...	chr1:245026814-245027072(-)$1	1	19	22	9.0000
(((	chr5:71493934-71494170(+)$1	1	5	8	9.0000
)).	chr16:89346897-89347146(-)$1	1	150	153	9.0000
...	chr5:71491431-71491669(+)$1	1	32	35	9.0000
.((	chr16:89348127-89348411(-)$1	1	6	9	9.0000
(((	chr14:65241808-65242135(-)$1	1	12	15	9.0000
(((	chr16:31198007-31198228(+)$1	1	160	163	9.0000
.))	chr19:2270320-2270598(+)$1	1	158	161	9.0000
...	chr11:62297228-62297547(-)$1	1	4	7	9.0000
...	chr11:62291007-62291233(-)$1	1	69	72	9.0000
...	chr8:94748457-94748690(-)$1	1	198	201	9.0000
((.	chr17:27023909-27024175(+)$1	1	10	13	9.0000
(((	chr7:100732471-100732737(+)$1	1	85	88	9.0000
...	chr1:16257502-16257777(+)$1	1	16	19	9.0000
...	chr16:89348258-89348499(-)$1	1	48	51	9.0000
((.	chr6:7231983-7232234(+)$1	1	29	32	9.0000
(((	chr19:39959300-39959602(+)$1	1	23	26	9.0000
((.	chr16:89350802-89351075(-)$1	1	122	125	9.0000
(..	chr5:71490576-71490832(+)$1	1	50	53	9.0000
)).	chr10:71148852-71149104(+)$1	1	28	31	9.0000
(((	chr17:20799074-20799334(+)$1	1	17	20	9.0000
((.	chr12:133353498-133353772(-)$1	1	122	125	9.0000
...	chr10:129902542-129902784(-)$1	1	3	6	9.0000
)))	chr17:27004701-27004934(+)$1	1	60	63	9.0000
)))	chr16:89346585-89346860(-)$1	1	63	66	9.0000
.(.	chr19:55558594-55558900(+)$1	1	32	35	9.0000
...	chr17:8451861-8452163(-)$1	1	131	134	9.0000
...	chr8:94745984-94746207(-)$1	1	19	22	9.0000
.((	chr8:94746820-94747051(-)$1	1	5	8	9.0000
...	chr8:94752623-94752867(-)$1	1	53	56	9.0000
...	chr8:144999533-144999816(-)$1	1	14	17	9.0000
(((	chr5:71490506-71490752(+)$1	1	13	16	9.0000
.((	chr8:144994942-144995174(-)$1	1	43	46	9.0000
...	chr11:62294969-62295212(-)$1	1	13	16	9.0000
...	chr11:62292083-62292350(-)$1	1	34	37	9.0000
((.	chr11:62300265-62300547(-)$1	1	76	79	9.0000
...	chr10:120801690-120801927(-)$1	1	1	4	9.0000
...	chr11:71724803-71725026(-)$1	1	22	25	9.0000
(((	chr2:54851840-54852177(+)$1	1	9	12	9.0000
(((	chr11:62297644-62297878(-)$1	1	6	9	9.0000
...	chr8:94748157-94748470(-)$1	1	38	41	9.0000
...	chr17:27008802-27009067(+)$1	1	39	42	9.0000
(((	chr16:89350307-89350602(-)$1	1	1	4	9.0000
.))	chr16:89346985-89347212(-)$1	1	216	219	9.0000
..)	chr9:134349890-134350156(+)$1	1	67	70	9.0000
...	chr5:71492199-71492446(+)$1	1	8	11	9.0000
((.	chr22:36697528-36697774(-)$1	1	10	13	9.0000
(((	chr19:11130166-11130397(+)$1	1	115	118	9.0000
((.	chr11:62287152-62287430(-)$1	1	4	7	9.0000
.((	chr16:89348867-89349114(-)$1	1	19	22	9.0000
.))	chr16:89348634-89348889(-)$1	1	12	15	9.0000
.))	chr13:108518035-108518327(-)$1	1	152	155	9.0000
)).	chr22:36684297-36684544(-)$1	1	22	25	9.0000
((.	chr11:71725390-71725668(-)$1	1	41	44	9.0000
...	chr16:89349833-89350150(-)$1	1	16	19	9.0000
(((	chr8:94748296-94748542(-)$1	1	50	53	9.0000
.((	chr12:125396249-125396514(-)$1	1	37	40	9.0000
(((	chr9:133760237-133760484(+)$1	1	59	62	9.0000
((.	chr8:144671561-144671876(-)$1	1	4	7	9.0000
...	chr7:1131212-1131475(-)$1	1	134	137	9.0000
...	chr8:94752685-94752943(-)$1	1	59	62	9.0000
(..	chr16:87735210-87735459(-)$1	1	59	62	9.0000
((.	chr10:71144501-71144750(+)$1	1	15	18	9.0000
((.	chr11:71726054-71726329(-)$1	1	3	6	9.0000
...	chr11:62294594-62294832(-)$1	1	2	5	9.0000
...	chr12:6691268-6691482(-)$1	1	80	83	9.0000
(((	chr5:71493618-71493874(+)$1	1	57	60	9.0000
((.	chr2:96964452-96964762(-)$1	1	19	22	9.0000
(..	chr17:17067319-17067572(+)$1	1	36	39	9.0000
...	chr16:89347792-89348081(-)$1	1	12	15	9.0000
...	chrX:153592597-153592830(-)$1	1	115	118	9.0000
)))	chr9:139565251-139565507(+)$1	1	37	40	9.0000
((.	chr16:89350264-89350500(-)$1	1	24	27	9.0000
...	chr19:39138284-39138537(+)$1	1	42	45	9.0000
...	chr7:1132258-1132480(-)$1	1	62	65	9.0000
...	chr8:144991801-144992098(-)$1	1	198	201	9.0000
...	chr8:94747044-94747314(-)$1	1	1	4	9.0000
...	chr11:62294489-62294767(-)$1	1	2	5	9.0000
).)	chr8:144672189-144672425(-)$1	1	205	208	9.0000
.((	chr16:89347086-89347350(-)$1	1	37	40	9.0000

#PSSM
A : 0.97	a : 0.02	
G : 0.97	g : 0.02	
A : 0.97	a : 0.02	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_CDS_m3_run1.nuc.txt

#NT
gggcuggggg	chr8:9629761-9630017(+)$1	256	6	16	17.7777
GGGGUGGUGG	chrM:14277-14487(-)$1	210	143	153	24.6296
GGGGUGGUGG	chrM:14301-14521(-)$1	220	177	187	24.6296
GGCGUGCUGG	chr19:18548494-18548710(-)$1	216	65	75	17.0370
CGGGUGCUGG	chr1:22155814-22156070(-)$1	256	0	10	17.5925
GGGGUGGUGG	chrM:14224-14449(-)$1	225	105	115	24.6296
ggggcggugg	chr1:22263565-22263826(-)$1	261	1	11	21.4814
GGGGUGGUGG	chrM:14167-14397(-)$1	230	53	63	24.6296
GGGGGGGUGG	chr19:4037251-4037475(+)$1	224	69	79	21.2962
GGGGCGGCGG	chr4:78740064-78740330(-)$1	266	50	60	18.3333
GGGGUGGGGG	chr6:30675341-30675654(-)$1	313	206	216	22.4074
GGGGUGGUGG	chrM:14216-14424(-)$1	208	80	90	24.6296
GGGGUGGUGG	chrM:14204-14416(-)$1	212	72	82	24.6296
CGGGUGCUGG	chr1:22155946-22156187(-)$1	241	117	127	17.5925
GGGGUGUUGG	chr19:2425978-2426265(-)$1	287	110	120	20.9259
GGGGAGCUGG	chr19:2270488-2270722(+)$1	234	24	34	19.0740
gggguggugg	chr19:50985396-50985651(+)$1	255	91	101	24.6296
GGGGAGGGGG	chr12:116714790-116715053(-)$1	263	206	216	19.8148
GGGGUGGUGG	chrM:14249-14477(-)$1	228	133	143	24.6296
gggguagugg	chr1:90493044-90493313(+)$1	269	99	109	19.9999
GGGGAGCUGG	chr19:2270413-2270668(+)$1	255	99	109	19.0740
GGGGAGGAGG	chr3:128205560-128205803(-)$1	243	213	223	19.0740
gggguggggg	chr2:54197770-54198043(-)$1	273	64	74	22.4074
GGGGAGGAGG	chr5:154135533-154135767(+)$1	234	57	67	19.0740
AGGGUGGGGG	chr9:131873722-131874006(+)$1	284	225	235	18.1481
GGGGUGGGGG	chr19:1104622-1104880(+)$1	258	73	83	22.4074

#otherMatches

#Struct PSSM
::CCC}BB}I	chrM:14287-14501(-)$1	214	157	167	24.6296
DDDDDD{EEE	chr8:9629761-9630017(+)$1	256	6	16	17.7777
b]dddd]eee	chrM:14277-14487(-)$1	210	143	153	24.6296
::CCC}BB}I	chrM:14301-14521(-)$1	220	177	187	24.6296
ddddddd"""	chr19:18548494-18548710(-)$1	216	65	75	17.0370
::HHHHHHHH	chr1:22155814-22156070(-)$1	256	0	10	17.5925
b]dddd]eee	chrM:14224-14449(-)$1	225	105	115	24.6296
KKEEEEE{DD	chr1:22263565-22263826(-)$1	261	1	11	21.4814
5555bb]a22	chrM:14167-14397(-)$1	230	53	63	24.6296
gggg[bb[bb	chr19:4037251-4037475(+)$1	224	69	79	21.2962
hhhhhh[ddd	chr4:78740064-78740330(-)$1	266	50	60	18.3333
dd]bb22ddd	chr6:30675341-30675654(-)$1	313	206	216	22.4074
b]dddd]eee	chrM:14216-14424(-)$1	208	80	90	24.6296
b]dddd]eee	chrM:14204-14416(-)$1	212	72	82	24.6296
heeeee!!cc	chr1:22155946-22156187(-)$1	241	117	127	17.5925
ccc]bb]eee	chr19:2425978-2426265(-)$1	287	110	120	20.9259
fff!!a[a[f	chr19:2270488-2270722(+)$1	234	24	34	19.0740
CCdddddddd	chr19:50985396-50985651(+)$1	255	91	101	24.6296
BB}AYYBB}C	chr12:116714790-116715053(-)$1	263	206	216	19.8148
b]dddd]eee	chrM:14249-14477(-)$1	228	133	143	24.6296
ff^^^^^^^^	chr1:90493044-90493313(+)$1	269	99	109	19.9999
fff!!a[a[f	chr19:2270413-2270668(+)$1	255	99	109	19.0740
:ffffff[dd	chr3:128205560-128205803(-)$1	243	213	223	19.0740
77a]ccc]dd	chr2:54197770-54198043(-)$1	273	64	74	22.4074
ddd]bb333f	chr5:154135533-154135767(+)$1	234	57	67	19.0740
}EEEEEZZZE	chr9:131873722-131874006(+)$1	284	225	235	18.1481
eeeeffffff	chr19:1104622-1104880(+)$1	258	73	83	22.4074

#DB
..))).)).)	chrM:14287-14501(-)$1	1	157	167	24.6296
((((((.(((	chr8:9629761-9630017(+)$1	1	6	16	17.7777
).)))).)))	chrM:14277-14487(-)$1	1	143	153	24.6296
..))).)).)	chrM:14301-14521(-)$1	1	177	187	24.6296
(((((((...	chr19:18548494-18548710(-)$1	1	65	75	17.0370
..((((((((	chr1:22155814-22156070(-)$1	1	0	10	17.5925
).)))).)))	chrM:14224-14449(-)$1	1	105	115	24.6296
..(((((.((	chr1:22263565-22263826(-)$1	1	1	11	21.4814
....)).)..	chrM:14167-14397(-)$1	1	53	63	24.6296
((((.((.((	chr19:4037251-4037475(+)$1	1	69	79	21.2962
((((((.(((	chr4:78740064-78740330(-)$1	1	50	60	18.3333
)).))..)))	chr6:30675341-30675654(-)$1	1	206	216	22.4074
).)))).)))	chrM:14216-14424(-)$1	1	80	90	24.6296
).)))).)))	chrM:14204-14416(-)$1	1	72	82	24.6296
)(((((..((	chr1:22155946-22156187(-)$1	1	117	127	17.5925
))).)).)))	chr19:2425978-2426265(-)$1	1	110	120	20.9259
(((..(.(.(	chr19:2270488-2270722(+)$1	1	24	34	19.0740
((((((((((	chr19:50985396-50985651(+)$1	1	91	101	24.6296
)).)..)).)	chr12:116714790-116715053(-)$1	1	206	216	19.8148
).)))).)))	chrM:14249-14477(-)$1	1	133	143	24.6296
((........	chr1:90493044-90493313(+)$1	1	99	109	19.9999
(((..(.(.(	chr19:2270413-2270668(+)$1	1	99	109	19.0740
.((((((.((	chr3:128205560-128205803(-)$1	1	213	223	19.0740
..).))).))	chr2:54197770-54198043(-)$1	1	64	74	22.4074
))).))...)	chr5:154135533-154135767(+)$1	1	57	67	19.0740
.)))))...)	chr9:131873722-131874006(+)$1	1	225	235	18.1481
))))))))))	chr19:1104622-1104880(+)$1	1	73	83	22.4074

#PSSM
G : 0.70	g : 0.18	C : 0.07	A : 0.03	
G : 0.81	g : 0.18	
G : 0.77	g : 0.18	C : 0.03	
G : 0.81	g : 0.14	c : 0.03	
U : 0.55	A : 0.18	u : 0.14	c : 0.03	G : 0.03	C : 0.03	
G : 0.81	g : 0.14	a : 0.03	
G : 0.59	g : 0.18	C : 0.18	U : 0.03	
U : 0.55	G : 0.14	u : 0.11	g : 0.07	A : 0.07	C : 0.03	
G : 0.81	g : 0.18	
G : 0.81	g : 0.18	

#score	575.185185185185
#seq	27
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_CDS_m3_run1.nuc.txt

#NT
UUUUA	chr10:124924452-124924701(+)$1	249	3	8	15.0000
UUUUA	chr14:50251879-50252136(-)$1	257	35	40	15.0000
UUUUA	chr20:479816-480061(-)$1	245	199	204	15.0000
UUUUA	chr12:69653706-69653966(+)$1	260	5	10	15.0000
UUUUA	chr17:61887761-61888023(+)$1	262	33	38	15.0000
UUUUA	chr12:8086363-8086619(-)$1	256	81	86	15.0000
UUUUA	chrX:151128306-151128561(-)$1	255	204	209	15.0000
UUUUA	chr10:70515900-70516146(+)$1	246	87	92	15.0000
UUUUA	chr6:116972656-116972939(-)$1	283	33	38	15.0000
uuuuA	chr9:72349028-72349278(-)$1	250	100	105	15.0000
UUUUA	chr5:179048259-179048511(-)$1	252	70	75	15.0000
UUUUA	chr6:10931563-10931829(+)$1	266	17	22	15.0000
UUUUA	chr17:47888726-47888981(+)$1	255	105	110	15.0000
UUUUA	chr11:87013233-87013516(+)$1	283	63	68	15.0000
UUUUA	chr2:86676795-86677073(+)$1	278	84	89	15.0000
UUUUA	chr13:111932493-111932758(+)$1	265	119	124	15.0000
UUUUA	chr3:142741230-142741517(+)$1	287	18	23	15.0000
UUUUA	chr2:118735473-118735721(-)$1	248	76	81	15.0000
UUUUA	chr1:27105419-27105636(+)$1	217	158	163	15.0000
UUUUA	chr7:131083874-131084143(+)$1	269	48	53	15.0000
uuuua	chr22:29678266-29678519(+)$1	253	81	86	15.0000
UUUUA	chr17:25630272-25630524(+)$1	252	33	38	15.0000
UUUUA	chr5:145863007-145863259(+)$1	252	49	54	15.0000
UUUUA	chr17:62478928-62479257(-)$1	329	247	252	15.0000
UUUUA	chr4:69184303-69184563(-)$1	260	145	150	15.0000
UUUUA	chr2:32724460-32724756(+)$1	296	83	88	15.0000
UUUUA	chr1:52933788-52934052(-)$1	264	29	34	15.0000
UUUUA	chr5:102895022-102895300(-)$1	278	54	59	15.0000
UUUUA	chr1:97278470-97278760(+)$1	290	235	240	15.0000
UUUUA	chr12:62954153-62954426(+)$1	273	14	19	15.0000
UUUUA	chr16:47699739-47699988(+)$1	249	27	32	15.0000
UUUUA	chr6:36887239-36887476(+)$1	237	37	42	15.0000
UUUUA	chr2:70454788-70455083(-)$1	295	6	11	15.0000
UUUUA	chr21:30324442-30324694(-)$1	252	54	59	15.0000
UUUUA	chr12:121779725-121779981(-)$1	256	41	46	15.0000
UUUUA	chr12:104704958-104705218(+)$1	260	68	73	15.0000
UUUUA	chr2:46807950-46808200(+)$1	250	25	30	15.0000
UUUUA	chr5:131044790-131045067(-)$1	277	69	74	15.0000
UUUUA	chr6:7608947-7609204(+)$1	257	44	49	15.0000
UUUUA	chr6:161491540-161491808(+)$1	268	66	71	15.0000
UUUUA	chr5:139866430-139866710(+)$1	280	106	111	15.0000
UUUUA	chr17:49052139-49052423(-)$1	284	21	26	15.0000
UUUUA	chr15:93498546-93498798(+)$1	252	8	13	15.0000
UUUUA	chr1:101440255-101440508(+)$1	253	5	10	15.0000
UUUUA	chr1:213341091-213341345(+)$1	254	81	86	15.0000
UUUUA	chr10:28906476-28906742(+)$1	266	50	55	15.0000
UUUUA	chr6:79911303-79911553(-)$1	250	173	178	15.0000
uuuua	chr1:46739684-46739950(+)$1	266	43	48	15.0000
UUUUA	chr9:127495476-127495741(-)$1	265	211	216	15.0000
UUUUA	chr2:71660188-71660503(+)$1	315	229	234	15.0000
UUUUA	chr17:27000261-27000566(+)$1	305	98	103	15.0000
UUUUA	chr1:145650382-145650632(+)$1	250	102	107	15.0000
UUUUA	chr15:50901769-50902026(-)$1	257	39	44	15.0000
UUUUA	chr1:19454099-19454347(-)$1	248	16	21	15.0000
UUUUA	chr2:32688121-32688457(+)$1	336	11	16	15.0000

#otherMatches

#Struct PSSM
:::::	chr8:124361558-124361785(-)$1	227	88	93	15.0000
:::::	chr10:124924452-124924701(+)$1	249	3	8	15.0000
=====	chr14:50251879-50252136(-)$1	257	35	40	15.0000
rrrrr	chr20:479816-480061(-)$1	245	199	204	15.0000
::::G	chr12:69653706-69653966(+)$1	260	5	10	15.0000
:::::	chr17:61887761-61888023(+)$1	262	33	38	15.0000
eeee:	chr12:8086363-8086619(-)$1	256	81	86	15.0000
qqqqb	chrX:151128306-151128561(-)$1	255	204	209	15.0000
ggggg	chr10:70515900-70516146(+)$1	246	87	92	15.0000
:GGGG	chr6:116972656-116972939(-)$1	283	33	38	15.0000
:::::	chr9:72349028-72349278(-)$1	250	100	105	15.0000
ggg!!	chr5:179048259-179048511(-)$1	252	70	75	15.0000
&&&dd	chr6:10931563-10931829(+)$1	266	17	22	15.0000
heeee	chr17:47888726-47888981(+)$1	255	105	110	15.0000
:::::	chr11:87013233-87013516(+)$1	283	63	68	15.0000
:::::	chr2:86676795-86677073(+)$1	278	84	89	15.0000
fffll	chr13:111932493-111932758(+)$1	265	119	124	15.0000
::ggg	chr3:142741230-142741517(+)$1	287	18	23	15.0000
hhhhh	chr2:118735473-118735721(-)$1	248	76	81	15.0000
ffDDD	chr1:27105419-27105636(+)$1	217	158	163	15.0000
###ff	chr7:131083874-131084143(+)$1	269	48	53	15.0000
ffff:	chr22:29678266-29678519(+)$1	253	81	86	15.0000
EEEE:	chr17:25630272-25630524(+)$1	252	33	38	15.0000
oooff	chr5:145863007-145863259(+)$1	252	49	54	15.0000
::fff	chr17:62478928-62479257(-)$1	329	247	252	15.0000
ccc]d	chr4:69184303-69184563(-)$1	260	145	150	15.0000
fffff	chr2:32724460-32724756(+)$1	296	83	88	15.0000
:::ee	chr1:52933788-52934052(-)$1	264	29	34	15.0000
iiiii	chr5:102895022-102895300(-)$1	278	54	59	15.0000
888dd	chr1:97278470-97278760(+)$1	290	235	240	15.0000
JJJJD	chr12:62954153-62954426(+)$1	273	14	19	15.0000
EEE{G	chr16:47699739-47699988(+)$1	249	27	32	15.0000
:::::	chr6:36887239-36887476(+)$1	237	37	42	15.0000
JJJJJ	chr2:70454788-70455083(-)$1	295	6	11	15.0000
ee:::	chr21:30324442-30324694(-)$1	252	54	59	15.0000
ffff:	chr12:121779725-121779981(-)$1	256	41	46	15.0000
fffoo	chr12:104704958-104705218(+)$1	260	68	73	15.0000
::fff	chr2:46807950-46808200(+)$1	250	25	30	15.0000
::fff	chr5:131044790-131045067(-)$1	277	69	74	15.0000
::::E	chr6:7608947-7609204(+)$1	257	44	49	15.0000
ff444	chr6:161491540-161491808(+)$1	268	66	71	15.0000
OOGGG	chr5:139866430-139866710(+)$1	280	106	111	15.0000
c333f	chr17:49052139-49052423(-)$1	284	21	26	15.0000
iiiii	chr15:93498546-93498798(+)$1	252	8	13	15.0000
IIII{	chr1:101440255-101440508(+)$1	253	5	10	15.0000
gggg:	chr1:213341091-213341345(+)$1	254	81	86	15.0000
HHHHH	chr10:28906476-28906742(+)$1	266	50	55	15.0000
$$$dd	chr6:79911303-79911553(-)$1	250	173	178	15.0000
&&&&i	chr1:46739684-46739950(+)$1	266	43	48	15.0000
::fff	chr9:127495476-127495741(-)$1	265	211	216	15.0000
>>>>>	chr2:71660188-71660503(+)$1	315	229	234	15.0000
bb[cc	chr17:27000261-27000566(+)$1	305	98	103	15.0000
^^^^^	chr1:145650382-145650632(+)$1	250	102	107	15.0000
dddd"	chr15:50901769-50902026(-)$1	257	39	44	15.0000
::GGG	chr1:19454099-19454347(-)$1	248	16	21	15.0000
nnnnd	chr2:32688121-32688457(+)$1	336	11	16	15.0000

#DB
.....	chr8:124361558-124361785(-)$1	1	88	93	15.0000
.....	chr10:124924452-124924701(+)$1	1	3	8	15.0000
)))))	chr14:50251879-50252136(-)$1	1	35	40	15.0000
.....	chr20:479816-480061(-)$1	1	199	204	15.0000
....(	chr12:69653706-69653966(+)$1	1	5	10	15.0000
.....	chr17:61887761-61888023(+)$1	1	33	38	15.0000
)))).	chr12:8086363-8086619(-)$1	1	81	86	15.0000
....)	chrX:151128306-151128561(-)$1	1	204	209	15.0000
)))))	chr10:70515900-70516146(+)$1	1	87	92	15.0000
.((((	chr6:116972656-116972939(-)$1	1	33	38	15.0000
.....	chr9:72349028-72349278(-)$1	1	100	105	15.0000
(((..	chr5:179048259-179048511(-)$1	1	70	75	15.0000
...((	chr6:10931563-10931829(+)$1	1	17	22	15.0000
(((((	chr17:47888726-47888981(+)$1	1	105	110	15.0000
.....	chr11:87013233-87013516(+)$1	1	63	68	15.0000
.....	chr2:86676795-86677073(+)$1	1	84	89	15.0000
(((..	chr13:111932493-111932758(+)$1	1	119	124	15.0000
..(((	chr3:142741230-142741517(+)$1	1	18	23	15.0000
)))))	chr2:118735473-118735721(-)$1	1	76	81	15.0000
)))))	chr1:27105419-27105636(+)$1	1	158	163	15.0000
...((	chr7:131083874-131084143(+)$1	1	48	53	15.0000
)))).	chr22:29678266-29678519(+)$1	1	81	86	15.0000
((((.	chr17:25630272-25630524(+)$1	1	33	38	15.0000
...))	chr5:145863007-145863259(+)$1	1	49	54	15.0000
..(((	chr17:62478928-62479257(-)$1	1	247	252	15.0000
))).)	chr4:69184303-69184563(-)$1	1	145	150	15.0000
)))))	chr2:32724460-32724756(+)$1	1	83	88	15.0000
...((	chr1:52933788-52934052(-)$1	1	29	34	15.0000
)))))	chr5:102895022-102895300(-)$1	1	54	59	15.0000
...))	chr1:97278470-97278760(+)$1	1	235	240	15.0000
(((((	chr12:62954153-62954426(+)$1	1	14	19	15.0000
(((.(	chr16:47699739-47699988(+)$1	1	27	32	15.0000
.....	chr6:36887239-36887476(+)$1	1	37	42	15.0000
(((((	chr2:70454788-70455083(-)$1	1	6	11	15.0000
))...	chr21:30324442-30324694(-)$1	1	54	59	15.0000
)))).	chr12:121779725-121779981(-)$1	1	41	46	15.0000
(((..	chr12:104704958-104705218(+)$1	1	68	73	15.0000
..(((	chr2:46807950-46808200(+)$1	1	25	30	15.0000
..(((	chr5:131044790-131045067(-)$1	1	69	74	15.0000
....(	chr6:7608947-7609204(+)$1	1	44	49	15.0000
))...	chr6:161491540-161491808(+)$1	1	66	71	15.0000
..(((	chr5:139866430-139866710(+)$1	1	106	111	15.0000
)...)	chr17:49052139-49052423(-)$1	1	21	26	15.0000
(((((	chr15:93498546-93498798(+)$1	1	8	13	15.0000
((((.	chr1:101440255-101440508(+)$1	1	5	10	15.0000
)))).	chr1:213341091-213341345(+)$1	1	81	86	15.0000
(((((	chr10:28906476-28906742(+)$1	1	50	55	15.0000
...((	chr6:79911303-79911553(-)$1	1	173	178	15.0000
....(	chr1:46739684-46739950(+)$1	1	43	48	15.0000
..(((	chr9:127495476-127495741(-)$1	1	211	216	15.0000
.....	chr2:71660188-71660503(+)$1	1	229	234	15.0000
((.((	chr17:27000261-27000566(+)$1	1	98	103	15.0000
.....	chr1:145650382-145650632(+)$1	1	102	107	15.0000
((((.	chr15:50901769-50902026(-)$1	1	39	44	15.0000
..(((	chr1:19454099-19454347(-)$1	1	16	21	15.0000
....)	chr2:32688121-32688457(+)$1	1	11	16	15.0000

#PSSM
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
U : 0.94	u : 0.05	
A : 0.96	a : 0.03	

#score	840.0000000000005
#seq	56
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_CDS_m2_run2.nuc.txt

#NT
GGGGGAUG	chr12:132402895-132403127(+)$1	232	80	88	16.3437
gggggagg	chr15:38776585-38776890(+)$1	305	80	88	20.6406
gggggagg	chr20:3765569-3765897(-)$1	328	92	100	20.6406
GGGGGAUG	chr19:10488901-10489155(-)$1	254	89	97	16.3437
GGGGGAGG	chr22:50016772-50017008(-)$1	236	61	69	20.6406
GGGGGUGG	chr1:11082210-11082474(+)$1	264	135	143	16.4218
GGGGGAGC	chr19:49964843-49965127(+)$1	284	96	104	16.2656
AGGGGAGG	chr15:80215073-80215345(-)$1	272	4	12	16.1093
GGGGGAUG	chr22:22049538-22049799(+)$1	261	20	28	16.3437
UGGGGAGG	chr5:180651109-180651389(+)$1	280	36	44	16.1093
gagggagg	chr13:115047370-115047626(+)$1	256	5	13	16.5000
GUGGGAGG	chr22:37622718-37623051(-)$1	333	7	15	16.6562
GGGGGAGG	chr17:48784808-48785144(-)$1	336	276	284	20.6406
gggggagg	chr17:7232336-7232703(-)$1	367	105	113	20.6406
GGGGGAGC	chr9:80646049-80646344(-)$1	295	111	119	16.2656
GGGGGAGG	chrX:41193788-41194020(+)$1	232	21	29	20.6406
GGGGGCGG	chr11:2405715-2406020(+)$1	305	114	122	16.5000
gggggugg	chr17:34171524-34171888(+)$1	364	48	56	16.4218
GUGGGAGG	chr5:176916996-176917264(-)$1	268	119	127	16.6562
GGCGGAGG	chr11:61196970-61197343(-)$1	373	62	70	16.5781
GGGGCAGG	chr3:122785850-122786164(+)$1	314	213	221	16.5000
GUGGGAGG	chr16:69165206-69165483(-)$1	277	95	103	16.6562
CGGGGAGG	chr7:150777590-150777876(-)$1	286	121	129	16.2656
CGGGGAGG	chr22:50018429-50018657(-)$1	228	105	113	16.2656
GGGGCAGG	chr19:42401289-42401573(+)$1	284	52	60	16.5000
gcgggagg	chr12:7342421-7342704(+)$1	283	53	61	16.5781
GGGGGAUG	chr8:145730474-145730796(-)$1	322	101	109	16.3437
GAGGGAGG	chr8:30670160-30670423(-)$1	263	68	76	16.5000
gggggcgg	chr19:55628755-55629012(-)$1	257	133	141	16.5000
GGGGCAGG	chr19:1011090-1011426(-)$1	336	75	83	16.5000
GGGGGAGG	chr16:4744314-4744569(+)$1	255	214	222	20.6406
gggggcgg	chr22:50722302-50722601(-)$1	299	62	70	16.5000
GGUGGAGG	chr16:67190447-67190764(-)$1	317	144	152	16.3437
GGCGGAGG	chr19:3201329-3201629(+)$1	300	124	132	16.5781
GGUGGAGG	chr19:3543815-3544100(-)$1	285	134	142	16.3437
GGGGGAGG	chr15:80215286-80215608(-)$1	322	109	117	20.6406
ggcggagg	chr17:47841229-47841481(-)$1	252	59	67	16.5781
gggggagg	chr1:984437-984726(+)$1	289	58	66	20.6406
gggggagc	chr3:185542641-185542940(-)$1	299	42	50	16.2656
gggggagg	chr17:55333991-55334263(+)$1	272	6	14	20.6406
cggggagg	chr9:136223072-136223321(-)$1	249	102	110	16.2656
ggcggagg	chr7:65338233-65338489(+)$1	256	23	31	16.5781
GCGGGAGG	chr16:30537571-30537843(-)$1	272	16	24	16.5781
GGGGUAGG	chr17:80218783-80219054(-)$1	271	118	126	16.1875
GGGGGAGG	chr16:4744414-4744706(+)$1	292	114	122	20.6406
GGGGGAGC	chr19:2270539-2270779(+)$1	240	86	94	16.2656
GGGGGAGG	chr9:139249991-139250279(+)$1	288	2	10	20.6406
gugggagg	chr19:51226770-51227031(+)$1	261	95	103	16.6562
GGGGGCGG	chr4:129208546-129208811(-)$1	265	13	21	16.5000
GCGGGAGG	chr1:202129627-202129908(-)$1	281	41	49	16.5781
GGGGCAGG	chr15:75651383-75651658(-)$1	275	10	18	16.5000
GGGGGAGG	chr16:88922674-88922975(-)$1	301	2	10	20.6406
GGGGGUGG	chr14:24901256-24901571(+)$1	315	19	27	16.4218
gggggagg	chr4:174089822-174090095(+)$1	273	73	81	20.6406
GGGGGACG	chr2:86259389-86259755(-)$1	366	309	317	16.1093
gggggagg	chr5:180651359-180651628(+)$1	269	77	85	20.6406
GGGGGAGG	chr6:31864806-31865056(-)$1	250	117	125	20.6406
GGGGGAGG	chr6:33179039-33179289(+)$1	250	85	93	20.6406
GGGGGAGG	chr6:32157536-32157751(-)$1	215	12	20	20.6406
GGGGGAGG	chr18:51750681-51750967(-)$1	286	53	61	20.6406
gggggagg	chr4:129208686-129208939(-)$1	253	102	110	20.6406
GGGGCAGG	chr7:104753046-104753347(-)$1	301	81	89	16.5000
GGCGGAGG	chr1:153930820-153931104(-)$1	284	77	85	16.5781

#otherMatches

#Struct PSSM
oooooodd	chr2:242447771-242448065(-)$1	294	179	187	20.6406
ggggg[bb	chr12:132402895-132403127(+)$1	232	80	88	16.3437
::::::::	chr15:38776585-38776890(+)$1	305	80	88	20.6406
::::::::	chr20:3765569-3765897(-)$1	328	92	100	20.6406
qqqqqqdd	chr19:10488901-10489155(-)$1	254	89	97	16.3437
IIIIIIII	chr22:50016772-50017008(-)$1	236	61	69	20.6406
CCC}EEEE	chr1:11082210-11082474(+)$1	264	135	143	16.4218
eeeee]ff	chr19:49964843-49965127(+)$1	284	96	104	16.2656
gggg$$$$	chr15:80215073-80215345(-)$1	272	4	12	16.1093
:FFFFFFD	chr22:22049538-22049799(+)$1	261	20	28	16.3437
BB::::::	chr5:180651109-180651389(+)$1	280	36	44	16.1093
fff[a[cc	chr13:115047370-115047626(+)$1	256	5	13	16.5000
GGGGGLLL	chr22:37622718-37623051(-)$1	333	7	15	16.6562
BB:bb!!d	chr17:48784808-48785144(-)$1	336	276	284	20.6406
[a!!a[hh	chr17:7232336-7232703(-)$1	367	105	113	20.6406
cooooooc	chr9:80646049-80646344(-)$1	295	111	119	16.2656
{DDDDCCC	chrX:41193788-41194020(+)$1	232	21	29	20.6406
gggccc]d	chr11:2405715-2406020(+)$1	305	114	122	16.5000
b4444a]h	chr17:34171524-34171888(+)$1	364	48	56	16.4218
mmdddd]d	chr5:176916996-176917264(-)$1	268	119	127	16.6562
DD{AKKCC	chr11:61196970-61197343(-)$1	373	62	70	16.5781
22eeeee]	chr3:122785850-122786164(+)$1	314	213	221	16.5000
CCKKCCC:	chr16:69165206-69165483(-)$1	277	95	103	16.6562
oooooccc	chr7:150777590-150777876(-)$1	286	121	129	16.2656
FFFF}CCC	chr22:50018429-50018657(-)$1	228	105	113	16.2656
========	chr19:42401289-42401573(+)$1	284	52	60	16.5000
HHHHccc!	chr12:7342421-7342704(+)$1	283	53	61	16.5781
{DDDDKKF	chr8:145730474-145730796(-)$1	322	101	109	16.3437
22ccceee	chr8:30670160-30670423(-)$1	263	68	76	16.5000
ff]bba[b	chr19:55628755-55629012(-)$1	257	133	141	16.5000
EEE{DDDD	chr19:1011090-1011426(-)$1	336	75	83	16.5000
FFFFFF}A	chr16:4744314-4744569(+)$1	255	214	222	20.6406
dddddddd	chr22:50722302-50722601(-)$1	299	62	70	16.5000
a]ccc]dd	chr16:67190447-67190764(-)$1	317	144	152	16.3437
eeeee[ff	chr19:3201329-3201629(+)$1	300	124	132	16.5781
BB}A}GGG	chr19:3543815-3544100(-)$1	285	134	142	16.3437
eeeee[cc	chr15:80215286-80215608(-)$1	322	109	117	20.6406
eeeemmmm	chr17:47841229-47841481(-)$1	252	59	67	16.5781
]a22ccc:	chr1:984437-984726(+)$1	289	58	66	20.6406
bb4444cc	chr3:185542641-185542940(-)$1	299	42	50	16.2656
A{EEEEE:	chr17:55333991-55334263(+)$1	272	6	14	20.6406
aooooooa	chr9:136223072-136223321(-)$1	249	102	110	16.2656
[bbmmmmb	chr7:65338233-65338489(+)$1	256	23	31	16.5781
[ccc####	chr16:30537571-30537843(-)$1	272	16	24	16.5781
bb]agggg	chr17:80218783-80219054(-)$1	271	118	126	16.1875
e55555a]	chr16:4744414-4744706(+)$1	292	114	122	20.6406
bb[bb[ff	chr19:2270539-2270779(+)$1	240	86	94	16.2656
FFFF{DDD	chr9:139249991-139250279(+)$1	288	2	10	20.6406
3a]eeeee	chr19:51226770-51227031(+)$1	261	95	103	16.6562
dddggggg	chr4:129208546-129208811(-)$1	265	13	21	16.5000
!a[bb!!c	chr1:202129627-202129908(-)$1	281	41	49	16.5781
gggggddd	chr15:75651383-75651658(-)$1	275	10	18	16.5000
ffffmmmm	chr16:88922674-88922975(-)$1	301	2	10	20.6406
B{GGGGGG	chr14:24901256-24901571(+)$1	315	19	27	16.4218
++++++++	chr4:174089822-174090095(+)$1	273	73	81	20.6406
BB~~~~DD	chr2:86259389-86259755(-)$1	366	309	317	16.1093
fffff&&&	chr5:180651359-180651628(+)$1	269	77	85	20.6406
{HHHHHHH	chr6:31864806-31865056(-)$1	250	117	125	20.6406
eee22ccc	chr6:33179039-33179289(+)$1	250	85	93	20.6406
eeeee[ee	chr6:32157536-32157751(-)$1	215	12	20	20.6406
BB:::::=	chr18:51750681-51750967(-)$1	286	53	61	20.6406
)))))))d	chr4:129208686-129208939(-)$1	253	102	110	20.6406
cc]dddd]	chr7:104753046-104753347(-)$1	301	81	89	16.5000
eeeee22g	chr1:153930820-153931104(-)$1	284	77	85	16.5781

#DB
......))	chr2:242447771-242448065(-)$1	1	179	187	20.6406
(((((.((	chr12:132402895-132403127(+)$1	1	80	88	16.3437
........	chr15:38776585-38776890(+)$1	1	80	88	20.6406
........	chr20:3765569-3765897(-)$1	1	92	100	20.6406
......))	chr19:10488901-10489155(-)$1	1	89	97	16.3437
((((((((	chr22:50016772-50017008(-)$1	1	61	69	20.6406
))).))))	chr1:11082210-11082474(+)$1	1	135	143	16.4218
))))).))	chr19:49964843-49965127(+)$1	1	96	104	16.2656
((((....	chr15:80215073-80215345(-)$1	1	4	12	16.1093
.(((((((	chr22:22049538-22049799(+)$1	1	20	28	16.3437
((......	chr5:180651109-180651389(+)$1	1	36	44	16.1093
(((.(.((	chr13:115047370-115047626(+)$1	1	5	13	16.5000
(((((...	chr22:37622718-37623051(-)$1	1	7	15	16.6562
)).((..(	chr17:48784808-48785144(-)$1	1	276	284	20.6406
.(..(.((	chr17:7232336-7232703(-)$1	1	105	113	20.6406
(......)	chr9:80646049-80646344(-)$1	1	111	119	16.2656
.(((((((	chrX:41193788-41194020(+)$1	1	21	29	20.6406
)))))).)	chr11:2405715-2406020(+)$1	1	114	122	16.5000
)....).)	chr17:34171524-34171888(+)$1	1	48	56	16.4218
..)))).)	chr5:176916996-176917264(-)$1	1	119	127	16.6562
((.(..((	chr11:61196970-61197343(-)$1	1	62	70	16.5781
..))))).	chr3:122785850-122786164(+)$1	1	213	221	16.5000
((..(((.	chr16:69165206-69165483(-)$1	1	95	103	16.6562
.....)))	chr7:150777590-150777876(-)$1	1	121	129	16.2656
)))).)))	chr22:50018429-50018657(-)$1	1	105	113	16.2656
))))))))	chr19:42401289-42401573(+)$1	1	52	60	16.5000
(((((((.	chr12:7342421-7342704(+)$1	1	53	61	16.5781
.((((..(	chr8:145730474-145730796(-)$1	1	101	109	16.3437
..))))))	chr8:30670160-30670423(-)$1	1	68	76	16.5000
)).))(.(	chr19:55628755-55629012(-)$1	1	133	141	16.5000
(((.((((	chr19:1011090-1011426(-)$1	1	75	83	16.5000
)))))).)	chr16:4744314-4744569(+)$1	1	214	222	20.6406
((((((((	chr22:50722302-50722601(-)$1	1	62	70	16.5000
).))).))	chr16:67190447-67190764(-)$1	1	144	152	16.3437
(((((.((	chr19:3201329-3201629(+)$1	1	124	132	16.5781
)).).)))	chr19:3543815-3544100(-)$1	1	134	142	16.3437
(((((.((	chr15:80215286-80215608(-)$1	1	109	117	20.6406
((((....	chr17:47841229-47841481(-)$1	1	59	67	16.5781
.)..))).	chr1:984437-984726(+)$1	1	58	66	20.6406
))....))	chr3:185542641-185542940(-)$1	1	42	50	16.2656
(.(((((.	chr17:55333991-55334263(+)$1	1	6	14	20.6406
(......)	chr9:136223072-136223321(-)$1	1	102	110	16.2656
.((....)	chr7:65338233-65338489(+)$1	1	23	31	16.5781
.(((....	chr16:30537571-30537843(-)$1	1	16	24	16.5781
)).)))))	chr17:80218783-80219054(-)$1	1	118	126	16.1875
).....).	chr16:4744414-4744706(+)$1	1	114	122	20.6406
((.((.((	chr19:2270539-2270779(+)$1	1	86	94	16.2656
((((.(((	chr9:139249991-139250279(+)$1	1	2	10	20.6406
.).)))))	chr19:51226770-51227031(+)$1	1	95	103	16.6562
((((((((	chr4:129208546-129208811(-)$1	1	13	21	16.5000
.(.((..(	chr1:202129627-202129908(-)$1	1	41	49	16.5781
((((((((	chr15:75651383-75651658(-)$1	1	10	18	16.5000
((((....	chr16:88922674-88922975(-)$1	1	2	10	20.6406
(.((((((	chr14:24901256-24901571(+)$1	1	19	27	16.4218
........	chr4:174089822-174090095(+)$1	1	73	81	20.6406
))....))	chr2:86259389-86259755(-)$1	1	309	317	16.1093
(((((...	chr5:180651359-180651628(+)$1	1	77	85	20.6406
.(((((((	chr6:31864806-31865056(-)$1	1	117	125	20.6406
)))..)))	chr6:33179039-33179289(+)$1	1	85	93	20.6406
(((((.((	chr6:32157536-32157751(-)$1	1	12	20	20.6406
((.....(	chr18:51750681-51750967(-)$1	1	53	61	20.6406
.......(	chr4:129208686-129208939(-)$1	1	102	110	20.6406
)).)))).	chr7:104753046-104753347(-)$1	1	81	89	16.5000
)))))..)	chr1:153930820-153931104(-)$1	1	77	85	16.5781

#PSSM
G : 0.64	g : 0.28	C : 0.03	A : 0.01	U : 0.01	c : 0.01	
G : 0.60	g : 0.25	U : 0.04	C : 0.03	a : 0.01	c : 0.01	A : 0.01	u : 0.01	
G : 0.62	g : 0.26	C : 0.04	U : 0.03	c : 0.03	
G : 0.70	g : 0.29	
G : 0.60	g : 0.29	C : 0.07	U : 0.01	
A : 0.64	a : 0.25	U : 0.03	C : 0.03	c : 0.03	u : 0.01	
G : 0.62	g : 0.29	U : 0.06	C : 0.01	
G : 0.65	g : 0.28	C : 0.04	c : 0.01	

#score	1139.90625
#seq	64
#width	8
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_transcript_m2_run1.nuc.txt

#NT
agggagc	chr22:19392393-19392649(-)$1	256	12	19	17.0937
AGGGAGU	chr21:15870287-15870553(-)$1	266	87	94	16.9375
agggagu	chr1:151024195-151024437(-)$1	242	210	217	16.9375
AGGGAGA	chr5:53388407-53388653(-)$1	246	100	107	17.4062
AGGGAGA	chr16:1905530-1905882(-)$1	352	101	108	17.4062
AGGGAGA	chr2:27820357-27820627(+)$1	270	112	119	17.4062
AGGGAGG	chr19:55856928-55857203(+)$1	275	103	110	17.5625
AGGGAGC	chr19:15408024-15408308(-)$1	284	112	119	17.0937
AGGGAGC	chr6:36939486-36939784(-)$1	298	129	136	17.0937
AGGGAGA	chr1:155945052-155945330(-)$1	278	38	45	17.4062
agggagg	chr7:158725537-158725799(+)$1	262	14	21	17.5625
AGGGAGA	chr16:20696155-20696386(+)$1	231	86	93	17.4062
agggagg	chr6:31500024-31500275(-)$1	251	8	15	17.5625
agggagg	chr20:5549592-5549858(-)$1	266	115	122	17.5625
AGGGAGC	chr2:173447023-173447310(+)$1	287	116	123	17.0937
agggagg	chr14:102299201-102299471(+)$1	270	120	127	17.5625
AGGGAGC	chr19:54971360-54971586(+)$1	226	52	59	17.0937
AGGGAGG	chr22:19493828-19494087(+)$1	259	87	94	17.5625
agggagu	chr2:223729249-223729503(+)$1	254	193	200	16.9375
AGGGAGA	chr19:1270164-1270444(+)$1	280	231	238	17.4062
AGGGAGU	chr16:70584815-70585150(+)$1	335	170	177	16.9375
AGGGAGC	chr6:36487064-36487336(-)$1	272	113	120	17.0937
AGGGAGG	chr17:54974796-54975078(-)$1	282	152	159	17.5625
AGGGAGA	chr3:151994315-151994648(+)$1	333	164	171	17.4062
AGGGAGA	chr19:52597686-52597948(-)$1	262	17	24	17.4062
AGGGAGU	chr22:48203494-48203855(+)$1	361	150	157	16.9375
AGGGAGG	chr10:126784860-126785170(-)$1	310	68	75	17.5625
AGGGAGA	chr21:35476760-35477070(+)$1	310	151	158	17.4062
AGGGAGC	chr11:2702697-2702949(-)$1	252	50	57	17.0937
AGGGAGU	chr17:30800933-30801222(+)$1	289	109	116	16.9375
agggagg	chr6:31596070-31596340(+)$1	270	192	199	17.5625

#otherMatches

#Struct PSSM
FFFFFFK	chr7:155507012-155507274(+)$1	262	0	7	17.5625
d!!bb[d	chr22:19392393-19392649(-)$1	256	12	19	17.0937
rffffff	chr21:15870287-15870553(-)$1	266	87	94	16.9375
:dddd[b	chr1:151024195-151024437(-)$1	242	210	217	16.9375
'''eeee	chr5:53388407-53388653(-)$1	246	100	107	17.4062
GGGG:::	chr16:1905530-1905882(-)$1	352	101	108	17.4062
:DDDDA}	chr2:27820357-27820627(+)$1	270	112	119	17.4062
uffffff	chr19:55856928-55857203(+)$1	275	103	110	17.5625
cffffff	chr19:15408024-15408308(-)$1	284	112	119	17.0937
!!cccbb	chr6:36939486-36939784(-)$1	298	129	136	17.0937
hhhh!!c	chr1:155945052-155945330(-)$1	278	38	45	17.4062
eee[ccc	chr7:158725537-158725799(+)$1	262	14	21	17.5625
:DDDD::	chr16:20696155-20696386(+)$1	231	86	93	17.4062
LLEEEEE	chr6:31500024-31500275(-)$1	251	8	15	17.5625
:::::::	chr20:5549592-5549858(-)$1	266	115	122	17.5625
eee:::f	chr2:173447023-173447310(+)$1	287	116	123	17.0937
ggg[ddd	chr14:102299201-102299471(+)$1	270	120	127	17.5625
cc:::cc	chr19:54971360-54971586(+)$1	226	52	59	17.0937
F::::::	chr22:19493828-19494087(+)$1	259	87	94	17.5625
c$$$$$e	chr2:223729249-223729503(+)$1	254	193	200	16.9375
:::::::	chr19:1270164-1270444(+)$1	280	231	238	17.4062
ccppppp	chr16:70584815-70585150(+)$1	335	170	177	16.9375
=======	chr6:36487064-36487336(-)$1	272	113	120	17.0937
8dddd22	chr17:54974796-54975078(-)$1	282	152	159	17.5625
777777i	chr3:151994315-151994648(+)$1	333	164	171	17.4062
:::::::	chr19:52597686-52597948(-)$1	262	17	24	17.4062
hhhhh[e	chr22:48203494-48203855(+)$1	361	150	157	16.9375
fffbba]	chr10:126784860-126785170(-)$1	310	68	75	17.5625
KAbbbb[	chr21:35476760-35477070(+)$1	310	151	158	17.4062
eeeemmm	chr11:2702697-2702949(-)$1	252	50	57	17.0937
ggg:a[=	chr17:30800933-30801222(+)$1	289	109	116	16.9375
qdddd66	chr6:31596070-31596340(+)$1	270	192	199	17.5625

#DB
((((((.	chr7:155507012-155507274(+)$1	1	0	7	17.5625
(..((.(	chr22:19392393-19392649(-)$1	1	12	19	17.0937
.))))))	chr21:15870287-15870553(-)$1	1	87	94	16.9375
.((((.(	chr1:151024195-151024437(-)$1	1	210	217	16.9375
...((((	chr5:53388407-53388653(-)$1	1	100	107	17.4062
((((...	chr16:1905530-1905882(-)$1	1	101	108	17.4062
.))))).	chr2:27820357-27820627(+)$1	1	112	119	17.4062
.))))))	chr19:55856928-55857203(+)$1	1	103	110	17.5625
)((((((	chr19:15408024-15408308(-)$1	1	112	119	17.0937
..(((((	chr6:36939486-36939784(-)$1	1	129	136	17.0937
((((..(	chr1:155945052-155945330(-)$1	1	38	45	17.4062
(((.(((	chr7:158725537-158725799(+)$1	1	14	21	17.5625
.((((..	chr16:20696155-20696386(+)$1	1	86	93	17.4062
..(((((	chr6:31500024-31500275(-)$1	1	8	15	17.5625
.......	chr20:5549592-5549858(-)$1	1	115	122	17.5625
)))...(	chr2:173447023-173447310(+)$1	1	116	123	17.0937
(((.(((	chr14:102299201-102299471(+)$1	1	120	127	17.5625
))...((	chr19:54971360-54971586(+)$1	1	52	59	17.0937
(......	chr22:19493828-19494087(+)$1	1	87	94	17.5625
(.....(	chr2:223729249-223729503(+)$1	1	193	200	16.9375
.......	chr19:1270164-1270444(+)$1	1	231	238	17.4062
((.....	chr16:70584815-70585150(+)$1	1	170	177	16.9375
)))))))	chr6:36487064-36487336(-)$1	1	113	120	17.0937
.))))..	chr17:54974796-54975078(-)$1	1	152	159	17.5625
......)	chr3:151994315-151994648(+)$1	1	164	171	17.4062
.......	chr19:52597686-52597948(-)$1	1	17	24	17.4062
(((((.(	chr22:48203494-48203855(+)$1	1	150	157	16.9375
)))))).	chr10:126784860-126785170(-)$1	1	68	75	17.5625
.(((((.	chr21:35476760-35477070(+)$1	1	151	158	17.4062
((((...	chr11:2702697-2702949(-)$1	1	50	57	17.0937
))).(.(	chr17:30800933-30801222(+)$1	1	109	116	16.9375
.))))..	chr6:31596070-31596340(+)$1	1	192	199	17.5625

#PSSM
A : 0.71	a : 0.28	
G : 0.71	g : 0.28	
G : 0.71	g : 0.28	
G : 0.71	g : 0.28	
A : 0.71	a : 0.28	
G : 0.71	g : 0.28	
A : 0.28	g : 0.18	C : 0.18	U : 0.12	G : 0.12	u : 0.06	c : 0.03	

#score	553.5625
#seq	32
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF215XPR_WDR3_transcript_m1_run1.nuc.txt

#NT
CGAGGAGGCCGUUaaggcuauacuuucagggaucauuucuauaguguguuacuagagaaguuucuuugaacguguagagcaccgaaaaccccgaggaagagagguagcguuuucuccugagc	chr17:19015840-19016048(-)$1	208	86	208	366.0000
CGAGGAGGCCGUUaaggcuauacuuucagggaucauuucuauaguguguuacuagagaaguuucuuugaacguguagagcaccgaaaaccccgaggaagagagguagcguuuucuccugagc	chr17:19015804-19016040(-)$1	236	78	200	366.0000

#otherMatches

#Struct PSSM
C{IIIIIIIII::::::ffffff[hhhhhhhh!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]ffffff:::::bbpppppppbbdddd[eeeeeooooooeeeeedddd::bb	chr17:19015769-19016004(-)$1	235	42	164	366.0000
hhhhhhh22eeeee:::ffffff[hhhhhhhh!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]ffffff::::DDDDZZZBBZZZEEEEEffffffooooooffffff::::::	chr17:19015840-19016048(-)$1	208	86	208	366.0000
hhhhhhhGGGGGGG:::ffffff[hhhhhhhh!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]ffffff:cccdddd[ccc[bb[ffffff"""ccc[ffffffooooooffff	chr17:19015804-19016040(-)$1	236	78	200	366.0000

#DB
(.(((((((((......((((((.((((((((..((((((.(((((...))))).)))))).)))))))).)))))).....((.......))((((.(((((......)))))))))..((	chr17:19015769-19016004(-)$1	1	42	164	366.0000
)))))))..)))))...((((((.((((((((..((((((.(((((...))))).)))))).)))))))).))))))....))))...))...)))))((((((......))))))......	chr17:19015840-19016048(-)$1	1	86	208	366.0000
))))))))))))))...((((((.((((((((..((((((.(((((...))))).)))))).)))))))).)))))).(((((((.(((.((.((((((...(((.((((((......))))	chr17:19015804-19016040(-)$1	1	78	200	366.0000

#PSSM
C : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
c : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
u : 1.00	
c : 1.00	
a : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
a : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
a : 1.00	
c : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
a : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
a : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
g : 1.00	
u : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	
g : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
c : 1.00	
u : 1.00	
c : 1.00	
c : 1.00	
u : 1.00	
g : 1.00	
a : 1.00	
g : 1.00	
c : 1.00	

#score	1098.0
#seq	3
#width	122
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF322GPD_SF3B1_transcript_m1_run2.nuc.txt

#NT
UGGGAGUUGCG	chr22:43011221-43011459(+)$1	238	158	169	27.2307
UGGGAGUUGCG	chr22:43011259-43011464(+)$1	205	120	131	27.2307
GGGGAGUUGGG	chr6:43745833-43746068(+)$1	235	183	194	27.2307
UGGGAGUUGCG	chr22:43011194-43011406(+)$1	212	185	196	27.2307
GGGGAGUUGGG	chr6:43745772-43746033(+)$1	261	244	255	27.2307
UGGGAGUUGCG	chr22:43011206-43011408(+)$1	202	173	184	27.2307
GGGGAGUUGGG	chr6:43745868-43746083(+)$1	215	148	159	27.2307
UGGGAGUUGGG	chr16:2810104-2810399(+)$1	295	117	128	27.6153
UGGGAGUUGCG	chr22:43011171-43011394(+)$1	223	208	219	27.2307
UGGGAGUUGCG	chr22:43011211-43011418(+)$1	207	168	179	27.2307
GGGGAGUUGGG	chr6:43745909-43746132(+)$1	223	107	118	27.2307
GGGGAGCUGGG	chr2:97559869-97560127(-)$1	258	99	110	23.7692

#otherMatches

#Struct PSSM
gggggg!!fff	chr2:97559938-97560192(-)$1	254	164	175	23.7692
d22ccc22ggg	chr22:43011221-43011459(+)$1	238	158	169	27.2307
d22ccc22ggg	chr22:43011259-43011464(+)$1	205	120	131	27.2307
]a666666eee	chr6:43745833-43746068(+)$1	235	183	194	27.2307
d22ccc22ggg	chr22:43011194-43011406(+)$1	212	185	196	27.2307
]ccc]eeeee2	chr6:43745772-43746033(+)$1	261	244	255	27.2307
d22ccc22ggg	chr22:43011206-43011408(+)$1	202	173	184	27.2307
::dddd[eeee	chr6:43745868-43746083(+)$1	215	148	159	27.2307
edddd!!dddd	chr16:2810104-2810399(+)$1	295	117	128	27.6153
CCYYEEEEEA:	chr22:43011171-43011394(+)$1	223	208	219	27.2307
d22ccc22ggg	chr22:43011211-43011418(+)$1	207	168	179	27.2307
dddddd[eeee	chr6:43745909-43746132(+)$1	223	107	118	27.2307
gggggg!!fff	chr2:97559869-97560127(-)$1	258	99	110	23.7692

#DB
((((((..(((	chr2:97559938-97560192(-)$1	1	164	175	23.7692
)..)))..)))	chr22:43011221-43011459(+)$1	1	158	169	27.2307
)..)))..)))	chr22:43011259-43011464(+)$1	1	120	131	27.2307
.)......)))	chr6:43745833-43746068(+)$1	1	183	194	27.2307
)..)))..)))	chr22:43011194-43011406(+)$1	1	185	196	27.2307
.))).))))).	chr6:43745772-43746033(+)$1	1	244	255	27.2307
)..)))..)))	chr22:43011206-43011408(+)$1	1	173	184	27.2307
..((((.((((	chr6:43745868-43746083(+)$1	1	148	159	27.2307
)((((..((((	chr16:2810104-2810399(+)$1	1	117	128	27.6153
))..)))))).	chr22:43011171-43011394(+)$1	1	208	219	27.2307
)..)))..)))	chr22:43011211-43011418(+)$1	1	168	179	27.2307
((((((.((((	chr6:43745909-43746132(+)$1	1	107	118	27.2307
((((((..(((	chr2:97559869-97560127(-)$1	1	99	110	23.7692

#PSSM
U : 0.53	G : 0.46	
G : 0.99	
G : 0.99	
G : 0.99	
A : 0.99	
G : 0.99	
U : 0.84	C : 0.15	
U : 0.99	
G : 0.99	
G : 0.53	C : 0.46	
G : 0.99	

#score	347.4615384615384
#seq	13
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_UTR_m2_run2.nuc.txt

#NT
aaagaagag	chr14:102551189-102551440(-)$1	251	180	189	21.6491
caggaagag	chr1:29475064-29475370(-)$1	306	31	40	16.2982
CAAGAGGAG	chr1:1323233-1323533(-)$1	300	146	155	16.1228
aaagaagag	chr14:102551154-102551364(-)$1	210	104	113	21.6491
CAAGAAGAA	chr3:142761856-142762098(+)$1	242	103	112	18.2280
Aaagaaggg	chr1:16891202-16891509(-)$1	307	103	112	17.1754
AAAGAAGAU	chr10:103920417-103920665(+)$1	248	5	14	18.4035
AAAGAAGAG	chr12:122999550-122999830(-)$1	280	62	71	21.6491
CACGAAGAG	chr13:107211843-107212079(-)$1	236	118	127	16.2982
AAAGAAGAA	chr17:48823234-48823465(+)$1	231	15	24	19.1052
CAUGAAGAG	chr10:70547619-70547898(+)$1	279	148	157	16.4736
AAAGAAGAG	chr12:122999630-122999841(-)$1	211	73	82	21.6491
AAAGAAGAG	chr10:70520768-70521029(+)$1	261	133	142	21.6491
AGAGAAGAG	chr2:175213205-175213488(-)$1	283	8	17	16.8245
AAUGAAGAG	chr18:55282948-55283150(-)$1	202	71	80	17.3508
AAAGAAGAU	chr6:12015709-12016006(+)$1	297	145	154	18.4035
GAAGAAGAG	chr11:17332348-17332658(+)$1	310	143	152	19.6315
aaagaagag	chr22:35661237-35661553(+)$1	316	109	118	21.6491
AAUGAAGAG	chr1:46073885-46074159(+)$1	274	78	87	17.3508
AAAGAAGAA	chr8:54906115-54906362(-)$1	247	78	87	19.1052
GAAGAAGAA	chr3:196214168-196214495(-)$1	327	73	82	17.0877
CAAGAAGAA	chr1:185275520-185275852(-)$1	332	133	142	18.2280
CAAGAAGAG	chr14:102550936-102551166(-)$1	230	26	35	20.7719
AAAGAAAAG	chr12:76449797-76450042(-)$1	245	110	119	17.1754
Aaagaagag	chr11:129991494-129991739(+)$1	245	137	146	21.6491
AAAGAAGAU	chr17:62498448-62498709(-)$1	261	110	119	18.4035
gaagaagag	chr8:124382080-124382361(-)$1	281	228	237	19.6315
CAAGAAAAG	chr16:89950931-89951166(+)$1	235	105	114	16.2982
CAAGAAGAG	chr19:15510025-15510286(-)$1	261	120	129	20.7719
gaagaagaa	chr4:174253051-174253315(-)$1	264	0	9	17.0877
AAAGAAGAG	chr17:48821020-48821243(+)$1	223	115	124	21.6491
UAAGAAGAG	chr2:175213524-175213791(-)$1	267	152	161	19.3684
CAAGAAGAG	chr14:102551119-102551327(-)$1	208	187	196	20.7719
CAAGAAGAG	chr16:89348634-89348913(-)$1	279	34	43	20.7719
AAAGAAGUG	chr3:121415960-121416225(-)$1	265	75	84	17.1754
AAAGAAGAG	chr16:4881884-4882249(-)$1	365	161	170	21.6491
GAAGAAGAA	chr10:70525562-70525797(+)$1	235	82	91	17.0877
Uaagaagaa	chr4:190864254-190864502(+)$1	248	102	111	16.8245
GAAGAAGAG	chr6:30545494-30545783(+)$1	289	139	148	19.6315
caagaggag	chrX:64737775-64738089(-)$1	314	57	66	16.1228
CAAGAAGAG	chr14:102551102-102551319(-)$1	217	179	188	20.7719
AAAGAAGAG	chr6:99849309-99849562(-)$1	253	171	180	21.6491
AAAGAAGCG	chr3:9488633-9488846(+)$1	213	159	168	17.3508
UAAGAAGAA	chr1:150192960-150193163(-)$1	203	96	105	16.8245
AAAGAAAAG	chr12:76449711-76449943(-)$1	232	11	20	17.1754
CAAGAAGCG	chr13:107220138-107220408(-)$1	270	203	212	16.4736
AAAGAAGAG	chr17:48820972-48821220(+)$1	248	163	172	21.6491
AAAGAAGAG	chr15:59185918-59186211(-)$1	293	44	53	21.6491
AAAGAAGAG	chr12:122999660-122999874(-)$1	214	106	115	21.6491
CAAGAAGAG	chr14:102551127-102551344(-)$1	217	204	213	20.7719
AAAGAAGAA	chr2:27592269-27592516(-)$1	247	121	130	19.1052
AAAGAAGCG	chr3:9488747-9488985(+)$1	238	45	54	17.3508
CAAGAAGAA	chr2:187364802-187365060(+)$1	258	147	156	18.2280
CAAGAAGAG	chr14:102550994-102551260(-)$1	266	120	129	20.7719
AAAGAAGAU	chr10:70532682-70532957(+)$1	275	62	71	18.4035
CAAGAAGAA	chr11:110106723-110107018(-)$1	295	152	161	18.2280

#otherMatches

#Struct PSSM
::cccoooo	chr10:70545811-70546076(+)$1	265	139	148	15.9473
:::::::::	chr14:102551189-102551440(-)$1	251	180	189	21.6491
D{BB:::::	chr1:29475064-29475370(-)$1	306	31	40	16.2982
dddd:bb[e	chr1:1323233-1323533(-)$1	300	146	155	16.1228
:::::::::	chr14:102551154-102551364(-)$1	210	104	113	21.6491
cc0000000	chr3:142761856-142762098(+)$1	242	103	112	18.2280
>>>>>>eee	chr1:16891202-16891509(-)$1	307	103	112	17.1754
::::::::f	chr10:103920417-103920665(+)$1	248	5	14	18.4035
ttta]bb]f	chr12:122999550-122999830(-)$1	280	62	71	21.6491
a]ccc]ddd	chr13:107211843-107212079(-)$1	236	118	127	16.2982
zzzzzzzzz	chr17:48823234-48823465(+)$1	231	15	24	19.1052
vvvvvvvvv	chr10:70547619-70547898(+)$1	279	148	157	16.4736
CCKKFFFFF	chr12:122999630-122999841(-)$1	211	73	82	21.6491
||||||DDD	chr10:70520768-70521029(+)$1	261	133	142	21.6491
eeeeqqqqq	chr2:175213205-175213488(-)$1	283	8	17	16.8245
#bbnnnnnb	chr18:55282948-55283150(-)$1	202	71	80	17.3508
HHHHH{EEE	chr6:12015709-12016006(+)$1	297	145	154	18.4035
GGGGGGG{D	chr11:17332348-17332658(+)$1	310	143	152	19.6315
^^^^^^^^^	chr22:35661237-35661553(+)$1	316	109	118	21.6491
!!bbooooo	chr1:46073885-46074159(+)$1	274	78	87	17.3508
EEE{GGGGG	chr8:54906115-54906362(-)$1	247	78	87	19.1052
+++++++++	chr3:196214168-196214495(-)$1	327	73	82	17.0877
~~~~EEEEE	chr1:185275520-185275852(-)$1	332	133	142	18.2280
B:ccc[a[c	chr14:102550936-102551166(-)$1	230	26	35	20.7719
dccc4444c	chr12:76449797-76450042(-)$1	245	110	119	17.1754
777777ddd	chr11:129991494-129991739(+)$1	245	137	146	21.6491
D:::::ddd	chr17:62498448-62498709(-)$1	261	110	119	18.4035
EE}EEEEEY	chr8:124382080-124382361(-)$1	281	228	237	19.6315
++++++++d	chr16:89950931-89951166(+)$1	235	105	114	16.2982
ddd55555b	chr19:15510025-15510286(-)$1	261	120	129	20.7719
::::::::B	chr4:174253051-174253315(-)$1	264	0	9	17.0877
f::::::::	chr17:48821020-48821243(+)$1	223	115	124	21.6491
cmmmmccc5	chr2:175213524-175213791(-)$1	267	152	161	19.3684
cc333eeee	chr14:102551119-102551327(-)$1	208	187	196	20.7719
oooeeeeec	chr16:89348634-89348913(-)$1	279	34	43	20.7719
:::::::CC	chr3:121415960-121416225(-)$1	265	75	84	17.1754
:::eeeeen	chr16:4881884-4882249(-)$1	365	161	170	21.6491
f333ccc]d	chr10:70525562-70525797(+)$1	235	82	91	17.0877
fffff::::	chr4:190864254-190864502(+)$1	248	102	111	16.8245
66666ffff	chr6:30545494-30545783(+)$1	289	139	148	19.6315
bmmmmbb::	chrX:64737775-64738089(-)$1	314	57	66	16.1228
cc333eeee	chr14:102551102-102551319(-)$1	217	179	188	20.7719
^^^^^^^^^	chr6:99849309-99849562(-)$1	253	171	180	21.6491
22ggggggg	chr3:9488633-9488846(+)$1	213	159	168	17.3508
f!!eeeeeo	chr1:150192960-150193163(-)$1	203	96	105	16.8245
::EEEEE{B	chr12:76449711-76449943(-)$1	232	11	20	17.1754
''''''ddd	chr13:107220138-107220408(-)$1	270	203	212	16.4736
f::::::::	chr17:48820972-48821220(+)$1	248	163	172	21.6491
DCCC{BBDD	chr15:59185918-59186211(-)$1	293	44	53	21.6491
ttta]bb]f	chr12:122999660-122999874(-)$1	214	106	115	21.6491
b::::::::	chr14:102551127-102551344(-)$1	217	204	213	20.7719
LLLBBOOOO	chr2:27592269-27592516(-)$1	247	121	130	19.1052
22ggggggg	chr3:9488747-9488985(+)$1	238	45	54	17.3508
CCMMMMDDD	chr2:187364802-187365060(+)$1	258	147	156	18.2280
cc333eeee	chr14:102550994-102551260(-)$1	266	120	129	20.7719
44ggggggg	chr10:70532682-70532957(+)$1	275	62	71	18.4035
a]eeeee::	chr11:110106723-110107018(-)$1	295	152	161	18.2280

#DB
..(((....	chr10:70545811-70546076(+)$1	1	139	148	15.9473
.........	chr14:102551189-102551440(-)$1	1	180	189	21.6491
(.((.....	chr1:29475064-29475370(-)$1	1	31	40	16.2982
)))).((.(	chr1:1323233-1323533(-)$1	1	146	155	16.1228
.........	chr14:102551154-102551364(-)$1	1	104	113	21.6491
)).......	chr3:142761856-142762098(+)$1	1	103	112	18.2280
......)))	chr1:16891202-16891509(-)$1	1	103	112	17.1754
........(	chr10:103920417-103920665(+)$1	1	5	14	18.4035
...).)).)	chr12:122999550-122999830(-)$1	1	62	71	21.6491
).))).)))	chr13:107211843-107212079(-)$1	1	118	127	16.2982
.........	chr17:48823234-48823465(+)$1	1	15	24	19.1052
.........	chr10:70547619-70547898(+)$1	1	148	157	16.4736
((..(((((	chr12:122999630-122999841(-)$1	1	73	82	21.6491
......)))	chr10:70520768-70521029(+)$1	1	133	142	21.6491
((((.....	chr2:175213205-175213488(-)$1	1	8	17	16.8245
.((.....)	chr18:55282948-55283150(-)$1	1	71	80	17.3508
(((((.(((	chr6:12015709-12016006(+)$1	1	145	154	18.4035
(((((((.(	chr11:17332348-17332658(+)$1	1	143	152	19.6315
.........	chr22:35661237-35661553(+)$1	1	109	118	21.6491
..((.....	chr1:46073885-46074159(+)$1	1	78	87	17.3508
(((.(((((	chr8:54906115-54906362(-)$1	1	78	87	19.1052
.........	chr3:196214168-196214495(-)$1	1	73	82	17.0877
....)))))	chr1:185275520-185275852(-)$1	1	133	142	18.2280
(.(((.(.(	chr14:102550936-102551166(-)$1	1	26	35	20.7719
))))....)	chr12:76449797-76450042(-)$1	1	110	119	17.1754
......)))	chr11:129991494-129991739(+)$1	1	137	146	21.6491
(.....(((	chr17:62498448-62498709(-)$1	1	110	119	18.4035
)).))))).	chr8:124382080-124382361(-)$1	1	228	237	19.6315
........(	chr16:89950931-89951166(+)$1	1	105	114	16.2982
))).....)	chr19:15510025-15510286(-)$1	1	120	129	20.7719
........(	chr4:174253051-174253315(-)$1	1	0	9	17.0877
)........	chr17:48821020-48821243(+)$1	1	115	124	21.6491
(....))).	chr2:175213524-175213791(-)$1	1	152	161	19.3684
))...))))	chr14:102551119-102551327(-)$1	1	187	196	20.7719
...)))))(	chr16:89348634-89348913(-)$1	1	34	43	20.7719
.......))	chr3:121415960-121416225(-)$1	1	75	84	17.1754
...(((((.	chr16:4881884-4882249(-)$1	1	161	170	21.6491
)...))).)	chr10:70525562-70525797(+)$1	1	82	91	17.0877
)))))....	chr4:190864254-190864502(+)$1	1	102	111	16.8245
.....))))	chr6:30545494-30545783(+)$1	1	139	148	19.6315
(....))..	chrX:64737775-64738089(-)$1	1	57	66	16.1228
))...))))	chr14:102551102-102551319(-)$1	1	179	188	20.7719
.........	chr6:99849309-99849562(-)$1	1	171	180	21.6491
..)))))))	chr3:9488633-9488846(+)$1	1	159	168	17.3508
(..(((((.	chr1:150192960-150193163(-)$1	1	96	105	16.8245
..(((((.(	chr12:76449711-76449943(-)$1	1	11	20	17.1754
......(((	chr13:107220138-107220408(-)$1	1	203	212	16.4736
)........	chr17:48820972-48821220(+)$1	1	163	172	21.6491
((((.((((	chr15:59185918-59186211(-)$1	1	44	53	21.6491
...).)).)	chr12:122999660-122999874(-)$1	1	106	115	21.6491
)........	chr14:102551127-102551344(-)$1	1	204	213	20.7719
...((....	chr2:27592269-27592516(-)$1	1	121	130	19.1052
..)))))))	chr3:9488747-9488985(+)$1	1	45	54	17.3508
((....(((	chr2:187364802-187365060(+)$1	1	147	156	18.2280
))...))))	chr14:102550994-102551260(-)$1	1	120	129	20.7719
..)))))))	chr10:70532682-70532957(+)$1	1	62	71	18.4035
).)))))..	chr11:110106723-110107018(-)$1	1	152	161	18.2280

#PSSM
A : 0.45	C : 0.29	G : 0.07	a : 0.05	U : 0.05	c : 0.03	g : 0.03	
A : 0.80	a : 0.17	G : 0.01	
A : 0.75	a : 0.15	U : 0.05	g : 0.01	C : 0.01	
G : 0.82	g : 0.17	
A : 0.80	a : 0.17	G : 0.01	
A : 0.80	a : 0.15	G : 0.01	g : 0.01	
G : 0.77	g : 0.17	A : 0.05	
A : 0.75	a : 0.15	C : 0.05	g : 0.01	U : 0.01	
G : 0.57	A : 0.17	g : 0.14	U : 0.07	a : 0.03	

#score	1078.82456140351
#seq	57
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_transcript_m1_run2.nuc.txt

#NT
UGG	chrX:153587374-153587592(-)$1	218	6	9	8.9999
UGG	chr17:1577076-1577286(-)$1	210	6	9	8.9999
UGG	chrX:123220315-123220571(+)$1	256	92	95	8.9999
UGG	chr17:1580280-1580505(-)$1	225	20	23	8.9999
UGG	chr8:48798538-48798768(-)$1	230	34	37	8.9999
UGG	chrX:153581104-153581334(-)$1	230	46	49	8.9999
UGG	chrX:41027318-41027568(+)$1	250	14	17	8.9999
UGG	chr17:57743862-57744105(+)$1	243	55	58	8.9999
UGG	chr11:9459382-9459621(+)$1	239	110	113	8.9999
UGG	chr12:57036437-57036690(-)$1	253	7	10	8.9999
UGG	chrX:153581269-153581483(-)$1	214	20	23	8.9999
UGG	chr2:44152936-44153199(-)$1	263	0	3	8.9999
UGG	chr1:40701666-40701942(+)$1	276	94	97	8.9999
UGG	chr2:114697493-114697753(+)$1	260	18	21	8.9999
UGG	chr17:45748031-45748298(+)$1	267	49	52	8.9999
UGG	chr17:78318575-78318832(+)$1	257	15	18	8.9999
UGG	chr8:144993955-144994216(-)$1	261	69	72	8.9999
UGG	chr17:57751007-57751233(+)$1	226	67	70	8.9999
UGG	chr5:154183053-154183295(+)$1	242	61	64	8.9999
UGG	chr1:115268794-115269040(-)$1	246	2	5	8.9999
UGG	chr21:34926155-34926432(+)$1	277	15	18	8.9999
UGG	chr17:1577738-1577980(-)$1	242	29	32	8.9999
UGG	chr2:96967203-96967447(-)$1	244	10	13	8.9999
UGG	chr5:154179332-154179567(+)$1	235	24	27	8.9999
UGG	chr8:95518764-95519046(-)$1	282	52	55	8.9999
UGG	chr19:3979925-3980143(-)$1	218	17	20	8.9999
UGG	chr1:19439094-19439349(-)$1	255	16	19	8.9999
UGG	chr1:154573537-154573862(-)$1	325	61	64	8.9999
UGG	chrX:53610417-53610666(-)$1	249	70	73	8.9999
UGG	chr11:62284976-62285217(-)$1	241	77	80	8.9999
UGG	chr8:48845587-48845821(-)$1	234	201	204	8.9999
UGG	chr1:115292453-115292709(-)$1	256	145	148	8.9999
UGG	chr19:41807339-41807671(+)$1	332	21	24	8.9999
UGG	chr8:41552669-41552944(-)$1	275	8	11	8.9999
UGG	chr7:128483802-128484014(+)$1	212	54	57	8.9999
UGG	chr1:19510418-19510684(-)$1	266	25	28	8.9999
UGG	chr11:61077675-61077894(-)$1	219	72	75	8.9999
UGG	chrX:53579689-53579933(-)$1	244	154	157	8.9999
UGG	chrX:153582948-153583158(-)$1	210	2	5	8.9999
UGG	chr1:19431023-19431257(-)$1	234	9	12	8.9999
UGG	chr15:28436189-28436483(-)$1	294	71	74	8.9999
UGG	chr1:19467901-19468118(-)$1	217	43	46	8.9999
UGG	chr6:37142057-37142309(+)$1	252	69	72	8.9999
UGG	chr8:17812925-17813240(+)$1	315	5	8	8.9999
UGG	chrX:39931682-39931943(-)$1	261	46	49	8.9999
UGG	chr12:116420121-116420400(-)$1	279	78	81	8.9999
UGG	chr19:59057085-59057299(+)$1	214	39	42	8.9999
UGG	chr3:33877442-33877859(+)$1	417	25	28	8.9999
UGG	chr17:78320716-78321005(+)$1	289	9	12	8.9999
UGG	chr3:184040276-184040527(+)$1	251	6	9	8.9999
UGG	chr12:6703586-6703832(-)$1	246	50	53	8.9999
UGG	chr11:62300252-62300501(-)$1	249	1	4	8.9999
UGG	chr11:122928881-122929132(-)$1	251	129	132	8.9999
UGG	chr1:19491642-19491848(-)$1	206	5	8	8.9999
UGG	chr5:154179187-154179419(+)$1	232	32	35	8.9999
UGG	chrX:41043620-41043870(+)$1	250	55	58	8.9999
UGG	chr11:62292334-62292624(-)$1	290	61	64	8.9999
UGG	chr3:47703815-47704113(-)$1	298	35	38	8.9999
UGG	chr8:48841603-48841823(-)$1	220	23	26	8.9999
UGG	chr11:62291443-62291730(-)$1	287	100	103	8.9999
UGG	chrX:153586536-153586791(-)$1	255	3	6	8.9999
UGG	chr17:1558583-1558873(-)$1	290	144	147	8.9999
UGG	chrX:41029154-41029419(+)$1	265	32	35	8.9999
UGG	chr6:44219761-44220001(+)$1	240	10	13	8.9999
UGG	chrX:53589068-53589303(-)$1	235	31	34	8.9999
UGG	chr17:26960812-26961052(-)$1	240	2	5	8.9999
UGG	chr5:154174753-154174980(+)$1	227	37	40	8.9999
UGG	chr17:1564017-1564221(-)$1	204	11	14	8.9999
UGG	chrX:153588499-153588717(-)$1	218	15	18	8.9999
UGG	chrX:153587318-153587574(-)$1	256	110	113	8.9999
UGG	chrX:153582649-153582869(-)$1	220	34	37	8.9999
UGG	chr19:34949647-34949902(+)$1	255	81	84	8.9999
UGG	chr1:241797591-241797889(-)$1	298	8	11	8.9999
UGG	chr9:35706703-35706939(-)$1	236	13	16	8.9999
UGG	chr14:102510218-102510477(+)$1	259	27	30	8.9999
UGG	chr2:183866580-183866839(-)$1	259	28	31	8.9999
UGG	chr8:48719598-48719815(-)$1	217	3	6	8.9999
UGG	chr9:35705497-35705725(-)$1	228	25	28	8.9999
UGG	chr1:19443668-19443902(-)$1	234	19	22	8.9999
UGG	chr3:184021657-184021931(+)$1	274	97	100	8.9999
UGG	chr3:184023462-184023753(+)$1	291	8	11	8.9999
UGG	chr1:220156054-220156286(-)$1	232	106	109	8.9999
UGG	chr9:114125774-114126037(-)$1	263	9	12	8.9999
UGG	chr21:34926620-34926877(+)$1	257	22	25	8.9999
UGG	chr11:62297959-62298207(-)$1	248	25	28	8.9999
UGG	chrX:153580574-153580850(-)$1	276	104	107	8.9999
UGG	chr3:184026139-184026407(+)$1	268	26	29	8.9999
UGG	chr21:34923407-34923653(+)$1	246	3	6	8.9999
UGG	chr7:98608704-98608979(+)$1	275	7	10	8.9999
UGG	chr19:3979943-3980158(-)$1	215	32	35	8.9999
UGG	chr1:12387761-12388012(+)$1	251	6	9	8.9999
UGG	chr16:2813607-2813832(+)$1	225	11	14	8.9999
UGG	chr9:95033719-95034012(-)$1	293	1	4	8.9999
UGG	chr17:45750761-45751027(+)$1	266	35	38	8.9999
UGG	chr13:98670706-98671037(+)$1	331	47	50	8.9999
UGG	chr2:44184423-44184682(-)$1	259	6	9	8.9999
UGG	chr22:42032439-42032739(+)$1	300	15	18	8.9999
UGG	chr1:19499342-19499565(-)$1	223	90	93	8.9999

#otherMatches

#Struct PSSM
ddd	chrX:41060339-41060623(+)$1	284	13	16	8.9999
!ee	chrX:153587374-153587592(-)$1	218	6	9	8.9999
FFF	chr17:1577076-1577286(-)$1	210	6	9	8.9999
e]f	chrX:123220315-123220571(+)$1	256	92	95	8.9999
JJJ	chr17:1580280-1580505(-)$1	225	20	23	8.9999
qee	chr8:48798538-48798768(-)$1	230	34	37	8.9999
eee	chrX:153581104-153581334(-)$1	230	46	49	8.9999
gg[	chrX:41027318-41027568(+)$1	250	14	17	8.9999
ccc	chr17:57743862-57744105(+)$1	243	55	58	8.9999
ddd	chr11:9459382-9459621(+)$1	239	110	113	8.9999
ooc	chr12:57036437-57036690(-)$1	253	7	10	8.9999
eee	chrX:153581269-153581483(-)$1	214	20	23	8.9999
:ee	chr2:44152936-44153199(-)$1	263	0	3	8.9999
mbb	chr1:40701666-40701942(+)$1	276	94	97	8.9999
:::	chr2:114697493-114697753(+)$1	260	18	21	8.9999
ggg	chr17:45748031-45748298(+)$1	267	49	52	8.9999
ooo	chr17:78318575-78318832(+)$1	257	15	18	8.9999
::d	chr8:144993955-144994216(-)$1	261	69	72	8.9999
CCC	chr17:57751007-57751233(+)$1	226	67	70	8.9999
eee	chr5:154183053-154183295(+)$1	242	61	64	8.9999
CCC	chr1:115268794-115269040(-)$1	246	2	5	8.9999
III	chr21:34926155-34926432(+)$1	277	15	18	8.9999
eee	chr17:1577738-1577980(-)$1	242	29	32	8.9999
===	chr2:96967203-96967447(-)$1	244	10	13	8.9999
rff	chr5:154179332-154179567(+)$1	235	24	27	8.9999
fCC	chr8:95518764-95519046(-)$1	282	52	55	8.9999
obb	chr19:3979925-3980143(-)$1	218	17	20	8.9999
ffu	chr1:19439094-19439349(-)$1	255	16	19	8.9999
eee	chr1:154573537-154573862(-)$1	325	61	64	8.9999
fff	chrX:53610417-53610666(-)$1	249	70	73	8.9999
ddd	chr11:62284976-62285217(-)$1	241	77	80	8.9999
eee	chr8:48845587-48845821(-)$1	234	201	204	8.9999
!bb	chr1:115292453-115292709(-)$1	256	145	148	8.9999
EEN	chr19:41807339-41807671(+)$1	332	21	24	8.9999
:gg	chr8:41552669-41552944(-)$1	275	8	11	8.9999
ddd	chr7:128483802-128484014(+)$1	212	54	57	8.9999
ccc	chr1:19510418-19510684(-)$1	266	25	28	8.9999
22c	chr11:61077675-61077894(-)$1	219	72	75	8.9999
e++	chrX:53579689-53579933(-)$1	244	154	157	8.9999
:CC	chrX:153582948-153583158(-)$1	210	2	5	8.9999
:bb	chr1:19431023-19431257(-)$1	234	9	12	8.9999
ggg	chr15:28436189-28436483(-)$1	294	71	74	8.9999
ff!	chr1:19467901-19468118(-)$1	217	43	46	8.9999
ggg	chr6:37142057-37142309(+)$1	252	69	72	8.9999
FFK	chr8:17812925-17813240(+)$1	315	5	8	8.9999
fff	chrX:39931682-39931943(-)$1	261	46	49	8.9999
]a]	chr12:116420121-116420400(-)$1	279	78	81	8.9999
ccc	chr19:59057085-59057299(+)$1	214	39	42	8.9999
$$$	chr3:33877442-33877859(+)$1	417	25	28	8.9999
C{E	chr17:78320716-78321005(+)$1	289	9	12	8.9999
FFB	chr3:184040276-184040527(+)$1	251	6	9	8.9999
ffp	chr12:6703586-6703832(-)$1	246	50	53	8.9999
III	chr11:62300252-62300501(-)$1	249	1	4	8.9999
f""	chr11:122928881-122929132(-)$1	251	129	132	8.9999
{A{	chr1:19491642-19491848(-)$1	206	5	8	8.9999
ccc	chr5:154179187-154179419(+)$1	232	32	35	8.9999
::C	chrX:41043620-41043870(+)$1	250	55	58	8.9999
fff	chr11:62292334-62292624(-)$1	290	61	64	8.9999
eee	chr3:47703815-47704113(-)$1	298	35	38	8.9999
#ii	chr8:48841603-48841823(-)$1	220	23	26	8.9999
ccc	chr11:62291443-62291730(-)$1	287	100	103	8.9999
EEE	chrX:153586536-153586791(-)$1	255	3	6	8.9999
fff	chr17:1558583-1558873(-)$1	290	144	147	8.9999
fff	chrX:41029154-41029419(+)$1	265	32	35	8.9999
HH{	chr6:44219761-44220001(+)$1	240	10	13	8.9999
b!!	chrX:53589068-53589303(-)$1	235	31	34	8.9999
:BB	chr17:26960812-26961052(-)$1	240	2	5	8.9999
$cc	chr5:154174753-154174980(+)$1	227	37	40	8.9999
f""	chr17:1564017-1564221(-)$1	204	11	14	8.9999
NBB	chrX:153588499-153588717(-)$1	218	15	18	8.9999
eee	chrX:153587318-153587574(-)$1	256	110	113	8.9999
dd:	chrX:153582649-153582869(-)$1	220	34	37	8.9999
ccc	chr19:34949647-34949902(+)$1	255	81	84	8.9999
FLL	chr1:241797591-241797889(-)$1	298	8	11	8.9999
::b	chr9:35706703-35706939(-)$1	236	13	16	8.9999
FFF	chr14:102510218-102510477(+)$1	259	27	30	8.9999
CCQ	chr2:183866580-183866839(-)$1	259	28	31	8.9999
FFF	chr8:48719598-48719815(-)$1	217	3	6	8.9999
"bb	chr9:35705497-35705725(-)$1	228	25	28	8.9999
eee	chr1:19443668-19443902(-)$1	234	19	22	8.9999
a]c	chr3:184021657-184021931(+)$1	274	97	100	8.9999
mmm	chr3:184023462-184023753(+)$1	291	8	11	8.9999
gg!	chr1:220156054-220156286(-)$1	232	106	109	8.9999
HHD	chr9:114125774-114126037(-)$1	263	9	12	8.9999
FF:	chr21:34926620-34926877(+)$1	257	22	25	8.9999
obb	chr11:62297959-62298207(-)$1	248	25	28	8.9999
ddd	chrX:153580574-153580850(-)$1	276	104	107	8.9999
nnn	chr3:184026139-184026407(+)$1	268	26	29	8.9999
eem	chr21:34923407-34923653(+)$1	246	3	6	8.9999
FFF	chr7:98608704-98608979(+)$1	275	7	10	8.9999
iii	chr19:3979943-3980158(-)$1	215	32	35	8.9999
fff	chr1:12387761-12388012(+)$1	251	6	9	8.9999
HHH	chr16:2813607-2813832(+)$1	225	11	14	8.9999
FFF	chr9:95033719-95034012(-)$1	293	1	4	8.9999
:::	chr17:45750761-45751027(+)$1	266	35	38	8.9999
{EE	chr13:98670706-98671037(+)$1	331	47	50	8.9999
F{D	chr2:44184423-44184682(-)$1	259	6	9	8.9999
DDD	chr22:42032439-42032739(+)$1	300	15	18	8.9999
ffc	chr1:19499342-19499565(-)$1	223	90	93	8.9999

#DB
(((	chrX:41060339-41060623(+)$1	1	13	16	8.9999
.((	chrX:153587374-153587592(-)$1	1	6	9	8.9999
(((	chr17:1577076-1577286(-)$1	1	6	9	8.9999
).)	chrX:123220315-123220571(+)$1	1	92	95	8.9999
(((	chr17:1580280-1580505(-)$1	1	20	23	8.9999
.))	chr8:48798538-48798768(-)$1	1	34	37	8.9999
)))	chrX:153581104-153581334(-)$1	1	46	49	8.9999
((.	chrX:41027318-41027568(+)$1	1	14	17	8.9999
))(	chr17:57743862-57744105(+)$1	1	55	58	8.9999
)))	chr11:9459382-9459621(+)$1	1	110	113	8.9999
..)	chr12:57036437-57036690(-)$1	1	7	10	8.9999
(((	chrX:153581269-153581483(-)$1	1	20	23	8.9999
.((	chr2:44152936-44153199(-)$1	1	0	3	8.9999
.))	chr1:40701666-40701942(+)$1	1	94	97	8.9999
...	chr2:114697493-114697753(+)$1	1	18	21	8.9999
)))	chr17:45748031-45748298(+)$1	1	49	52	8.9999
...	chr17:78318575-78318832(+)$1	1	15	18	8.9999
..(	chr8:144993955-144994216(-)$1	1	69	72	8.9999
(((	chr17:57751007-57751233(+)$1	1	67	70	8.9999
(((	chr5:154183053-154183295(+)$1	1	61	64	8.9999
(((	chr1:115268794-115269040(-)$1	1	2	5	8.9999
(((	chr21:34926155-34926432(+)$1	1	15	18	8.9999
)))	chr17:1577738-1577980(-)$1	1	29	32	8.9999
(((	chr2:96967203-96967447(-)$1	1	10	13	8.9999
.))	chr5:154179332-154179567(+)$1	1	24	27	8.9999
)((	chr8:95518764-95519046(-)$1	1	52	55	8.9999
.))	chr19:3979925-3980143(-)$1	1	17	20	8.9999
((.	chr1:19439094-19439349(-)$1	1	16	19	8.9999
)))	chr1:154573537-154573862(-)$1	1	61	64	8.9999
)))	chrX:53610417-53610666(-)$1	1	70	73	8.9999
)))	chr11:62284976-62285217(-)$1	1	77	80	8.9999
)))	chr8:48845587-48845821(-)$1	1	201	204	8.9999
.((	chr1:115292453-115292709(-)$1	1	145	148	8.9999
((.	chr19:41807339-41807671(+)$1	1	21	24	8.9999
.((	chr8:41552669-41552944(-)$1	1	8	11	8.9999
)))	chr7:128483802-128484014(+)$1	1	54	57	8.9999
(((	chr1:19510418-19510684(-)$1	1	25	28	8.9999
..)	chr11:61077675-61077894(-)$1	1	72	75	8.9999
(..	chrX:53579689-53579933(-)$1	1	154	157	8.9999
.((	chrX:153582948-153583158(-)$1	1	2	5	8.9999
.((	chr1:19431023-19431257(-)$1	1	9	12	8.9999
(((	chr15:28436189-28436483(-)$1	1	71	74	8.9999
((.	chr1:19467901-19468118(-)$1	1	43	46	8.9999
)))	chr6:37142057-37142309(+)$1	1	69	72	8.9999
((.	chr8:17812925-17813240(+)$1	1	5	8	8.9999
(((	chrX:39931682-39931943(-)$1	1	46	49	8.9999
.).	chr12:116420121-116420400(-)$1	1	78	81	8.9999
(((	chr19:59057085-59057299(+)$1	1	39	42	8.9999
...	chr3:33877442-33877859(+)$1	1	25	28	8.9999
(.(	chr17:78320716-78321005(+)$1	1	9	12	8.9999
(((	chr3:184040276-184040527(+)$1	1	6	9	8.9999
((.	chr12:6703586-6703832(-)$1	1	50	53	8.9999
(((	chr11:62300252-62300501(-)$1	1	1	4	8.9999
(..	chr11:122928881-122929132(-)$1	1	129	132	8.9999
.(.	chr1:19491642-19491848(-)$1	1	5	8	8.9999
)))	chr5:154179187-154179419(+)$1	1	32	35	8.9999
..(	chrX:41043620-41043870(+)$1	1	55	58	8.9999
)))	chr11:62292334-62292624(-)$1	1	61	64	8.9999
(((	chr3:47703815-47704113(-)$1	1	35	38	8.9999
.((	chr8:48841603-48841823(-)$1	1	23	26	8.9999
(((	chr11:62291443-62291730(-)$1	1	100	103	8.9999
(((	chrX:153586536-153586791(-)$1	1	3	6	8.9999
)))	chr17:1558583-1558873(-)$1	1	144	147	8.9999
(((	chrX:41029154-41029419(+)$1	1	32	35	8.9999
((.	chr6:44219761-44220001(+)$1	1	10	13	8.9999
(..	chrX:53589068-53589303(-)$1	1	31	34	8.9999
.((	chr17:26960812-26961052(-)$1	1	2	5	8.9999
.((	chr5:154174753-154174980(+)$1	1	37	40	8.9999
(..	chr17:1564017-1564221(-)$1	1	11	14	8.9999
.((	chrX:153588499-153588717(-)$1	1	15	18	8.9999
)))	chrX:153587318-153587574(-)$1	1	110	113	8.9999
)).	chrX:153582649-153582869(-)$1	1	34	37	8.9999
(((	chr19:34949647-34949902(+)$1	1	81	84	8.9999
(..	chr1:241797591-241797889(-)$1	1	8	11	8.9999
..(	chr9:35706703-35706939(-)$1	1	13	16	8.9999
(((	chr14:102510218-102510477(+)$1	1	27	30	8.9999
((.	chr2:183866580-183866839(-)$1	1	28	31	8.9999
(((	chr8:48719598-48719815(-)$1	1	3	6	8.9999
.((	chr9:35705497-35705725(-)$1	1	25	28	8.9999
)))	chr1:19443668-19443902(-)$1	1	19	22	8.9999
).)	chr3:184021657-184021931(+)$1	1	97	100	8.9999
...	chr3:184023462-184023753(+)$1	1	8	11	8.9999
((.	chr1:220156054-220156286(-)$1	1	106	109	8.9999
(((	chr9:114125774-114126037(-)$1	1	9	12	8.9999
((.	chr21:34926620-34926877(+)$1	1	22	25	8.9999
.))	chr11:62297959-62298207(-)$1	1	25	28	8.9999
)))	chrX:153580574-153580850(-)$1	1	104	107	8.9999
...	chr3:184026139-184026407(+)$1	1	26	29	8.9999
((.	chr21:34923407-34923653(+)$1	1	3	6	8.9999
(((	chr7:98608704-98608979(+)$1	1	7	10	8.9999
)))	chr19:3979943-3980158(-)$1	1	32	35	8.9999
(((	chr1:12387761-12388012(+)$1	1	6	9	8.9999
(((	chr16:2813607-2813832(+)$1	1	11	14	8.9999
(((	chr9:95033719-95034012(-)$1	1	1	4	8.9999
...	chr17:45750761-45751027(+)$1	1	35	38	8.9999
.((	chr13:98670706-98671037(+)$1	1	47	50	8.9999
(.(	chr2:44184423-44184682(-)$1	1	6	9	8.9999
(((	chr22:42032439-42032739(+)$1	1	15	18	8.9999
)))	chr1:19499342-19499565(-)$1	1	90	93	8.9999

#PSSM
U : 0.99	
G : 0.99	
G : 0.99	

#score	890.9999999999993
#seq	99
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_transcript_m1_run2.nuc.txt

#NT
uuuuuuuuuuu	chr4:140063879-140064122(-)$1	243	88	99	20.0000
ucuuucuuuca	chr3:69107424-69107681(-)$1	257	60	71	15.7500
ucuuuauuucu	chr8:28008734-28008994(+)$1	260	26	37	18.0000
guuuucuuuuu	chrX:73329605-73329877(-)$1	272	86	97	17.2500
UUUUUCAUUUU	chr20:60569964-60570212(-)$1	248	93	104	17.5833
uuuuugugucu	chr2:240092991-240093256(-)$1	265	77	88	17.0833
ucuuuuuuucu	chr17:15944426-15944746(-)$1	320	82	93	18.9166
UUUUGUUUUCU	chr11:3887040-3887302(+)$1	262	192	203	18.5833
UUUUUUUUUCU	chr2:165575453-165575760(-)$1	307	35	46	22.5000
uuuuugcuucu	chr9:115402787-115403045(+)$1	258	203	214	17.3333
uuuuuuuuucu	chr2:62951779-62952023(+)$1	244	1	12	22.5000
uuuuuuuuuuu	chr22:50798694-50798942(+)$1	248	85	96	20.0000
uuuaucuuuuu	chr4:184197241-184197475(+)$1	234	76	87	17.5000
UUUUUCUUUGG	chr14:24109435-24109689(+)$1	254	68	79	16.0833
UUUCUCUUUCU	chr1:52201463-52201710(+)$1	247	88	99	19.9166
uuuaucugucu	chr1:146752838-146753113(+)$1	275	116	127	15.6666
UAUUUAUUUCU	chr7:127371392-127371619(+)$1	227	31	42	17.7500
CUUUUCUUUGU	chr2:235920237-235920554(+)$1	317	47	58	16.4166
uuuuucauugu	chr3:69108078-69108329(-)$1	251	96	107	16.9166
uuguuuuuucu	chr1:113171925-113172191(+)$1	266	65	76	18.2500
uuuuuuuuucu	chr7:157910320-157910559(-)$1	239	76	87	22.5000
UUGUUGUUUCU	chr19:37075924-37076172(-)$1	248	102	113	17.1666
UCUUCCUUUCU	chr22:29331055-29331301(+)$1	246	89	100	16.1666
uuuuucuuucu	chr12:26644895-26645124(-)$1	229	11	22	23.8333
uuuuuuuuccu	chr7:89997751-89998071(+)$1	320	55	66	17.9166
uuuuauuuucu	chr11:116926459-116926722(-)$1	263	38	49	18.5000
uuuuucauuca	chr12:72048955-72049191(-)$1	236	57	68	15.5833
UGUUUAUUUCU	chr10:5817408-5817643(-)$1	235	0	11	17.6666
uucuucuuacu	chr2:150460977-150461262(+)$1	285	132	143	14.8333
UGUUUCUCUCU	chr18:12854557-12854871(-)$1	314	112	123	15.5000
uuuaucuuucu	chr10:113951957-113952218(-)$1	261	93	104	20.0000
UUUGUAUUUCU	chr2:175070310-175070560(-)$1	250	233	244	17.6666
uuuuauuuucu	chr12:121873601-121873900(-)$1	299	72	83	18.5000
AUUUUCCUUCU	chr1:42651948-42652164(-)$1	216	119	130	15.4166
uauuccuuucu	chr11:72773139-72773384(-)$1	245	86	97	15.9166
uaauucuuucu	chr3:37911462-37911714(+)$1	252	2	13	15.6666
uuuuaauuucu	chrX:73377856-73378114(-)$1	258	81	92	17.5833
uuuuuaugucu	chr1:234611539-234611816(-)$1	277	39	50	17.2500
UUUUUCGUUAU	chr9:111811112-111811398(-)$1	286	261	272	16.3333
guuuucucucu	chr20:23362220-23362536(-)$1	316	89	100	15.3333
UCUUGCUUUCU	chr3:79064251-79064506(-)$1	255	80	91	16.3333
UUUUUUUUUUU	chr17:8368730-8368979(+)$1	249	224	235	20.0000
uuuuucuuugu	chr12:46271902-46272154(+)$1	252	30	41	20.6666
uuuuucuuguu	chr8:103395737-103395990(-)$1	253	45	56	16.8333
uuucucauucu	chr11:125511596-125511844(+)$1	248	3	14	16.1666
guuuucuuuuu	chr2:242249255-242249532(-)$1	277	9	20	17.2500
uuuauuuuucu	chr1:36446242-36446504(+)$1	262	73	84	18.6666
uuuuuuuuuuu	chr2:75774038-75774297(-)$1	259	244	255	20.0000
UUAUUCUUUCU	chr10:60957004-60957254(+)$1	250	65	76	19.5000
UUUUUUUUUCU	chr10:81525333-81525591(-)$1	258	82	93	22.5000
uuugucauucu	chr6:145010523-145010775(+)$1	252	70	81	16.1666
guuuucuugcu	chr3:60930598-60930956(-)$1	358	25	36	15.2500
ccuuucuuucu	chr7:138174368-138174629(+)$1	261	135	146	16.0000
uuucucuuuau	chr7:35864563-35864820(+)$1	257	72	83	16.5833
UUUGGCUUUCU	chr2:233594465-233594699(+)$1	234	48	59	16.0000
uuuuuuuuuuu	chr17:55171888-55172132(+)$1	244	80	91	20.0000
uuuuuuuuuuu	chr4:184201151-184201442(+)$1	291	231	242	20.0000
uuuuuguuuuu	chrX:133056651-133056857(-)$1	206	32	43	18.9166
uuguucuuucc	chr14:56069842-56070112(+)$1	270	16	27	15.0000

#otherMatches

#Struct PSSM
==HHHHHHHH:	chr2:64141567-64141802(-)$1	235	176	187	16.1666
:::::::::::	chr4:140063879-140064122(-)$1	243	88	99	20.0000
cc####eeeee	chr3:69107424-69107681(-)$1	257	60	71	15.7500
:::::::::::	chr8:28008734-28008994(+)$1	260	26	37	18.0000
IIIIIII::::	chrX:73329605-73329877(-)$1	272	86	97	17.2500
:::::::::::	chr20:60569964-60570212(-)$1	248	93	104	17.5833
:::::::::::	chr2:240092991-240093256(-)$1	265	77	88	17.0833
:::::::::::	chr17:15944426-15944746(-)$1	320	82	93	18.9166
iiiiiiiii[d	chr11:3887040-3887302(+)$1	262	192	203	18.5833
eeee::eeeee	chr2:165575453-165575760(-)$1	307	35	46	22.5000
33eeeee::ee	chr9:115402787-115403045(+)$1	258	203	214	17.3333
::::::iiiii	chr2:62951779-62952023(+)$1	244	1	12	22.5000
d:::hhhhhhh	chr22:50798694-50798942(+)$1	248	85	96	20.0000
ttttttttttt	chr4:184197241-184197475(+)$1	234	76	87	17.5000
=====:::DDD	chr14:24109435-24109689(+)$1	254	68	79	16.0833
nnnnnbb22bb	chr1:52201463-52201710(+)$1	247	88	99	19.9166
0000000ffff	chr1:146752838-146753113(+)$1	275	116	127	15.6666
::::::eeeee	chr7:127371392-127371619(+)$1	227	31	42	17.7500
ee]eeeee]cc	chr2:235920237-235920554(+)$1	317	47	58	16.4166
::::::::ccc	chr3:69108078-69108329(-)$1	251	96	107	16.9166
:::::::::::	chr1:113171925-113172191(+)$1	266	65	76	18.2500
""=========	chr7:157910320-157910559(-)$1	239	76	87	22.5000
====[bbqqqq	chr19:37075924-37076172(-)$1	248	102	113	17.1666
mmmccc:::::	chr22:29331055-29331301(+)$1	246	89	100	16.1666
::::::ddddn	chr12:26644895-26645124(-)$1	229	11	22	23.8333
:::::::::::	chr7:89997751-89998071(+)$1	320	55	66	17.9166
gguuuuuuuuu	chr11:116926459-116926722(-)$1	263	38	49	18.5000
e:::::eeeee	chr12:72048955-72049191(-)$1	236	57	68	15.5833
:::::::::::	chr10:5817408-5817643(-)$1	235	0	11	17.6666
^^^^^^^^^^^	chr2:150460977-150461262(+)$1	285	132	143	14.8333
tttttttttee	chr18:12854557-12854871(-)$1	314	112	123	15.5000
:::::::::::	chr10:113951957-113952218(-)$1	261	93	104	20.0000
EEEEZZZDDDD	chr2:175070310-175070560(-)$1	250	233	244	17.6666
nnffffffeee	chr12:121873601-121873900(-)$1	299	72	83	18.5000
::::::a!!cc	chr1:42651948-42652164(-)$1	216	119	130	15.4166
:::::::::::	chr11:72773139-72773384(-)$1	245	86	97	15.9166
:::::::::::	chr3:37911462-37911714(+)$1	252	2	13	15.6666
LEEEEE:::cc	chrX:73377856-73378114(-)$1	258	81	92	17.5833
qffffffccc]	chr1:234611539-234611816(-)$1	277	39	50	17.2500
ldddd]dddd]	chr9:111811112-111811398(-)$1	286	261	272	16.3333
fffff22dddd	chr20:23362220-23362536(-)$1	316	89	100	15.3333
hhhhhhhmmmm	chr3:79064251-79064506(-)$1	255	80	91	16.3333
ee:::::::::	chr17:8368730-8368979(+)$1	249	224	235	20.0000
:::::::::::	chr12:46271902-46272154(+)$1	252	30	41	20.6666
mmmffffff::	chr8:103395737-103395990(-)$1	253	45	56	16.8333
:::::::::::	chr11:125511596-125511844(+)$1	248	3	14	16.1666
:::::::::::	chr2:242249255-242249532(-)$1	277	9	20	17.2500
:::::::::::	chr1:36446242-36446504(+)$1	262	73	84	18.6666
GGG::::::::	chr2:75774038-75774297(-)$1	259	244	255	20.0000
iiiiiiii$$$	chr10:60957004-60957254(+)$1	250	65	76	19.5000
00ccc22eeee	chr10:81525333-81525591(-)$1	258	82	93	22.5000
HHHHHHHHHHH	chr6:145010523-145010775(+)$1	252	70	81	16.1666
BKKDDDDKKCC	chr3:60930598-60930956(-)$1	358	25	36	15.2500
ddd::::::::	chr7:138174368-138174629(+)$1	261	135	146	16.0000
:::::EEEEEL	chr7:35864563-35864820(+)$1	257	72	83	16.5833
&&&&ggggggg	chr2:233594465-233594699(+)$1	234	48	59	16.0000
:::::::::::	chr17:55171888-55172132(+)$1	244	80	91	20.0000
ffff>>>>>>>	chr4:184201151-184201442(+)$1	291	231	242	20.0000
a]ffffff:::	chrX:133056651-133056857(-)$1	206	32	43	18.9166
mccc:::::::	chr14:56069842-56070112(+)$1	270	16	27	15.0000

#DB
)))))))))).	chr2:64141567-64141802(-)$1	1	176	187	16.1666
...........	chr4:140063879-140064122(-)$1	1	88	99	20.0000
((....(((((	chr3:69107424-69107681(-)$1	1	60	71	15.7500
...........	chr8:28008734-28008994(+)$1	1	26	37	18.0000
(((((((....	chrX:73329605-73329877(-)$1	1	86	97	17.2500
...........	chr20:60569964-60570212(-)$1	1	93	104	17.5833
...........	chr2:240092991-240093256(-)$1	1	77	88	17.0833
...........	chr17:15944426-15944746(-)$1	1	82	93	18.9166
(((((((((.(	chr11:3887040-3887302(+)$1	1	192	203	18.5833
))))..(((((	chr2:165575453-165575760(-)$1	1	35	46	22.5000
..)))))..((	chr9:115402787-115403045(+)$1	1	203	214	17.3333
......(((((	chr2:62951779-62952023(+)$1	1	1	12	22.5000
)...(((((((	chr22:50798694-50798942(+)$1	1	85	96	20.0000
...........	chr4:184197241-184197475(+)$1	1	76	87	17.5000
)))))...(((	chr14:24109435-24109689(+)$1	1	68	79	16.0833
.....))..))	chr1:52201463-52201710(+)$1	1	88	99	19.9166
.......))))	chr1:146752838-146753113(+)$1	1	116	127	15.6666
......(((((	chr7:127371392-127371619(+)$1	1	31	42	17.7500
)).))))).))	chr2:235920237-235920554(+)$1	1	47	58	16.4166
........(((	chr3:69108078-69108329(-)$1	1	96	107	16.9166
...........	chr1:113171925-113172191(+)$1	1	65	76	18.2500
..(((((((((	chr7:157910320-157910559(-)$1	1	76	87	22.5000
((((.((....	chr19:37075924-37076172(-)$1	1	102	113	17.1666
...))).....	chr22:29331055-29331301(+)$1	1	89	100	16.1666
......((((.	chr12:26644895-26645124(-)$1	1	11	22	23.8333
...........	chr7:89997751-89998071(+)$1	1	55	66	17.9166
((.........	chr11:116926459-116926722(-)$1	1	38	49	18.5000
).....(((((	chr12:72048955-72049191(-)$1	1	57	68	15.5833
...........	chr10:5817408-5817643(-)$1	1	0	11	17.6666
...........	chr2:150460977-150461262(+)$1	1	132	143	14.8333
.........))	chr18:12854557-12854871(-)$1	1	112	123	15.5000
...........	chr10:113951957-113952218(-)$1	1	93	104	20.0000
))))...))))	chr2:175070310-175070560(-)$1	1	233	244	17.6666
..)))))))))	chr12:121873601-121873900(-)$1	1	72	83	18.5000
......(..((	chr1:42651948-42652164(-)$1	1	119	130	15.4166
...........	chr11:72773139-72773384(-)$1	1	86	97	15.9166
...........	chr3:37911462-37911714(+)$1	1	2	13	15.6666
.(((((...((	chrX:73377856-73378114(-)$1	1	81	92	17.5833
.))))))))).	chr1:234611539-234611816(-)$1	1	39	50	17.2500
.)))).)))).	chr9:111811112-111811398(-)$1	1	261	272	16.3333
)))))..))))	chr20:23362220-23362536(-)$1	1	89	100	15.3333
(((((((....	chr3:79064251-79064506(-)$1	1	80	91	16.3333
)).........	chr17:8368730-8368979(+)$1	1	224	235	20.0000
...........	chr12:46271902-46272154(+)$1	1	30	41	20.6666
...))))))..	chr8:103395737-103395990(-)$1	1	45	56	16.8333
...........	chr11:125511596-125511844(+)$1	1	3	14	16.1666
...........	chr2:242249255-242249532(-)$1	1	9	20	17.2500
...........	chr1:36446242-36446504(+)$1	1	73	84	18.6666
)))........	chr2:75774038-75774297(-)$1	1	244	255	20.0000
((((((((...	chr10:60957004-60957254(+)$1	1	65	76	19.5000
..)))..))))	chr10:81525333-81525591(-)$1	1	82	93	22.5000
(((((((((((	chr6:145010523-145010775(+)$1	1	70	81	16.1666
(..((((..((	chr3:60930598-60930956(-)$1	1	25	36	15.2500
)))........	chr7:138174368-138174629(+)$1	1	135	146	16.0000
.....(((((.	chr7:35864563-35864820(+)$1	1	72	83	16.5833
....(((((((	chr2:233594465-233594699(+)$1	1	48	59	16.0000
...........	chr17:55171888-55172132(+)$1	1	80	91	20.0000
)))).......	chr4:184201151-184201442(+)$1	1	231	242	20.0000
).))))))...	chrX:133056651-133056857(-)$1	1	32	43	18.9166
.))).......	chr14:56069842-56070112(+)$1	1	16	27	15.0000

#PSSM
u : 0.60	U : 0.28	g : 0.06	C : 0.01	A : 0.01	c : 0.01	
u : 0.58	U : 0.23	c : 0.06	C : 0.03	G : 0.03	a : 0.03	A : 0.01	
u : 0.61	U : 0.28	g : 0.03	G : 0.01	c : 0.01	a : 0.01	A : 0.01	
u : 0.56	U : 0.26	a : 0.06	G : 0.03	c : 0.03	C : 0.01	g : 0.01	
u : 0.60	U : 0.24	G : 0.05	a : 0.05	g : 0.01	C : 0.01	c : 0.01	
c : 0.36	u : 0.21	C : 0.18	U : 0.06	a : 0.05	g : 0.05	A : 0.05	G : 0.01	
u : 0.58	U : 0.26	a : 0.08	A : 0.01	c : 0.01	C : 0.01	G : 0.01	
u : 0.61	U : 0.30	g : 0.05	C : 0.01	c : 0.01	
u : 0.61	U : 0.31	g : 0.03	c : 0.01	a : 0.01	
c : 0.46	C : 0.23	u : 0.16	U : 0.03	G : 0.03	g : 0.03	A : 0.01	a : 0.01	
u : 0.63	U : 0.30	a : 0.03	G : 0.01	c : 0.01	

#score	1071.3333333333337
#seq	60
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_transcript_m3_run1.nuc.txt

#NT
GAG	chr19:10270332-10270589(-)$1	257	152	155	9.0000
GAG	chr9:137253254-137253504(+)$1	250	112	115	9.0000
GAG	chr12:6619510-6619717(+)$1	207	29	32	9.0000
GAG	chr16:595543-595776(+)$1	233	120	123	9.0000
GAG	chr19:6219523-6219795(-)$1	272	59	62	9.0000
GAG	chr10:1046729-1047022(+)$1	293	7	10	9.0000
GAG	chr9:137278271-137278542(+)$1	271	27	30	9.0000
GAG	chr17:76167103-76167442(+)$1	339	67	70	9.0000
GAG	chr5:138614388-138614605(+)$1	217	162	165	9.0000
gag	chr22:50013599-50013825(-)$1	226	5	8	9.0000
GAG	chr12:6715471-6715770(-)$1	299	5	8	9.0000
GAG	chr16:70571857-70572087(+)$1	230	37	40	9.0000
gag	chr7:1894652-1894911(-)$1	259	7	10	9.0000
GAG	chr16:85658814-85659049(+)$1	235	168	171	9.0000
gag	chr19:893461-893673(+)$1	212	65	68	9.0000
GAG	chr19:49607480-49607696(+)$1	216	22	25	9.0000
GAG	chr11:17096140-17096383(-)$1	243	63	66	9.0000
GAG	chr16:85660705-85660933(+)$1	228	18	21	9.0000
GAG	chr3:126710344-126710608(+)$1	264	88	91	9.0000
GAG	chrX:153178945-153179198(-)$1	253	0	3	9.0000
GAG	chr17:79479452-79479706(-)$1	254	28	31	9.0000
GAG	chr16:587338-587597(+)$1	259	32	35	9.0000
GAG	chr16:85627770-85628012(+)$1	242	27	30	9.0000
GAG	chr20:62332165-62332391(-)$1	226	36	39	9.0000
GAG	chr3:186502491-186502724(+)$1	233	138	141	9.0000
GAG	chr12:49048066-49048304(-)$1	238	54	57	9.0000
GAG	chr9:140136789-140137121(+)$1	332	162	165	9.0000
GAG	chr17:79881393-79881632(-)$1	239	97	100	9.0000
GAG	chr15:91459439-91459670(+)$1	231	23	26	9.0000
GAG	chr17:27071792-27072034(+)$1	242	31	34	9.0000
GAG	chr19:799269-799482(+)$1	213	19	22	9.0000
GAG	chr16:89038933-89039177(-)$1	244	5	8	9.0000
GAG	chr1:38453274-38453520(-)$1	246	11	14	9.0000
GAG	chr8:145532779-145533026(+)$1	247	67	70	9.0000
GAG	chr5:85916241-85916488(+)$1	247	37	40	9.0000
GAG	chr20:2637511-2637721(+)$1	210	54	57	9.0000
GAG	chr12:56645734-56646023(-)$1	289	3	6	9.0000
GAG	chr9:134360193-134360464(+)$1	271	37	40	9.0000
GAG	chrX:20154147-20154360(-)$1	213	53	56	9.0000
GAG	chr19:2806759-2807049(+)$1	290	3	6	9.0000
GAG	chr22:50041306-50041556(-)$1	250	55	58	9.0000
GAG	chr8:145107310-145107547(-)$1	237	3	6	9.0000
GAG	chr3:128215811-128216106(+)$1	295	16	19	9.0000
GAG	chr6:133136389-133136616(+)$1	227	103	106	9.0000
GAG	chr9:123202110-123202419(-)$1	309	9	12	9.0000
gag	chr3:194935512-194935724(+)$1	212	46	49	9.0000
GAG	chr12:6619543-6619753(+)$1	210	37	40	9.0000
GAG	chr19:1470156-1470430(-)$1	274	32	35	9.0000
GAG	chr7:5569012-5569238(-)$1	226	79	82	9.0000
GAG	chr1:2199841-2200085(+)$1	244	20	23	9.0000
GAG	chr17:41464601-41464813(-)$1	212	13	16	9.0000
GAG	chr16:1370679-1370937(+)$1	258	38	41	9.0000
GAG	chrX:154003283-154003502(+)$1	219	32	35	9.0000
GAG	chr10:3176323-3176588(+)$1	265	72	75	9.0000
GAG	chr1:28906182-28906388(-)$1	206	39	42	9.0000
GAG	chr1:1283590-1283838(-)$1	248	6	9	9.0000
GAG	chr10:102762093-102762429(+)$1	336	18	21	9.0000
GAG	chr16:58582302-58582541(-)$1	239	123	126	9.0000
GAG	chr7:897313-897568(+)$1	255	57	60	9.0000
GAG	chr16:85676258-85676509(+)$1	251	73	76	9.0000
GAG	chr16:596505-596780(+)$1	275	15	18	9.0000
GAG	chr16:88543522-88543822(+)$1	300	0	3	9.0000
GAG	chr13:92001124-92001437(+)$1	313	26	29	9.0000
GAG	chr22:39709724-39709935(-)$1	211	32	35	9.0000
GAG	chr2:97554462-97554718(-)$1	256	21	24	9.0000
GAG	chr16:599475-599737(+)$1	262	172	175	9.0000
GAG	chr16:89022608-89022850(-)$1	242	8	11	9.0000
GAG	chr11:586752-586998(+)$1	246	15	18	9.0000
GAG	chr12:6619567-6619771(+)$1	204	13	16	9.0000
GAG	chr16:88967968-88968226(-)$1	258	212	215	9.0000
GAG	chr11:821259-821483(+)$1	224	68	71	9.0000
GAG	chr9:140260958-140261229(-)$1	271	12	15	9.0000
GAG	chr19:13059936-13060160(+)$1	224	0	3	9.0000
GAG	chr19:1645916-1646165(-)$1	249	5	8	9.0000
GAG	chr3:48575930-48576205(-)$1	275	198	201	9.0000
GAG	chr5:111497159-111497368(+)$1	209	135	138	9.0000
GAG	chr17:80053252-80053495(-)$1	243	2	5	9.0000
GAG	chr16:88988917-88989156(-)$1	239	171	174	9.0000
GAG	chr22:50020775-50021004(-)$1	229	6	9	9.0000
GAG	chr12:57917648-57917935(+)$1	287	40	43	9.0000
GAG	chr1:1688665-1688902(-)$1	237	108	111	9.0000
GAG	chr14:21731865-21732136(-)$1	271	9	12	9.0000
gag	chr19:58903754-58904082(+)$1	328	28	31	9.0000
GAG	chr17:47123096-47123369(+)$1	273	1	4	9.0000
GAG	chr3:15091311-15091602(-)$1	291	42	45	9.0000
GAG	chr16:89035474-89035742(-)$1	268	28	31	9.0000
GAG	chr3:126711682-126711925(+)$1	243	5	8	9.0000
GAG	chr2:97533517-97533802(-)$1	285	13	16	9.0000
GAG	chr7:143079198-143079506(+)$1	308	43	46	9.0000
GAG	chr19:6218578-6218800(-)$1	222	29	32	9.0000
GAG	chr1:161130277-161130545(+)$1	268	0	3	9.0000
GAG	chr1:76252719-76252923(+)$1	204	47	50	9.0000
GAG	chr2:74754854-74755143(-)$1	289	50	53	9.0000
GAG	chr19:1409592-1409843(+)$1	251	32	35	9.0000
GAG	chr19:59060210-59060448(+)$1	238	18	21	9.0000
GAG	chr3:47449035-47449279(+)$1	244	45	48	9.0000
GAG	chr4:174255111-174255402(-)$1	291	37	40	9.0000

#otherMatches

#Struct PSSM
]bb	chr13:45910348-45910582(-)$1	234	121	124	9.0000
e]b	chr19:10270332-10270589(-)$1	257	152	155	9.0000
d[c	chr9:137253254-137253504(+)$1	250	112	115	9.0000
KKB	chr12:6619510-6619717(+)$1	207	29	32	9.0000
ddd	chr16:595543-595776(+)$1	233	120	123	9.0000
ddd	chr19:6219523-6219795(-)$1	272	59	62	9.0000
III	chr10:1046729-1047022(+)$1	293	7	10	9.0000
mbb	chr9:137278271-137278542(+)$1	271	27	30	9.0000
f22	chr17:76167103-76167442(+)$1	339	67	70	9.0000
eee	chr5:138614388-138614605(+)$1	217	162	165	9.0000
ddd	chr22:50013599-50013825(-)$1	226	5	8	9.0000
mmb	chr12:6715471-6715770(-)$1	299	5	8	9.0000
ddd	chr16:70571857-70572087(+)$1	230	37	40	9.0000
::C	chr7:1894652-1894911(-)$1	259	7	10	9.0000
g]i	chr16:85658814-85659049(+)$1	235	168	171	9.0000
!!c	chr19:893461-893673(+)$1	212	65	68	9.0000
g[d	chr19:49607480-49607696(+)$1	216	22	25	9.0000
eee	chr11:17096140-17096383(-)$1	243	63	66	9.0000
FFF	chr16:85660705-85660933(+)$1	228	18	21	9.0000
KKH	chr3:126710344-126710608(+)$1	264	88	91	9.0000
EEE	chrX:153178945-153179198(-)$1	253	0	3	9.0000
d[f	chr17:79479452-79479706(-)$1	254	28	31	9.0000
EEE	chr16:587338-587597(+)$1	259	32	35	9.0000
fll	chr16:85627770-85628012(+)$1	242	27	30	9.0000
ddd	chr20:62332165-62332391(-)$1	226	36	39	9.0000
bb6	chr3:186502491-186502724(+)$1	233	138	141	9.0000
c]d	chr12:49048066-49048304(-)$1	238	54	57	9.0000
e:h	chr9:140136789-140137121(+)$1	332	162	165	9.0000
GGG	chr17:79881393-79881632(-)$1	239	97	100	9.0000
""d	chr15:91459439-91459670(+)$1	231	23	26	9.0000
fff	chr17:27071792-27072034(+)$1	242	31	34	9.0000
ttc	chr19:799269-799482(+)$1	213	19	22	9.0000
LLL	chr16:89038933-89039177(-)$1	244	5	8	9.0000
fff	chr1:38453274-38453520(-)$1	246	11	14	9.0000
DDD	chr8:145532779-145533026(+)$1	247	67	70	9.0000
FFF	chr5:85916241-85916488(+)$1	247	37	40	9.0000
ooo	chr20:2637511-2637721(+)$1	210	54	57	9.0000
DDD	chr12:56645734-56646023(-)$1	289	3	6	9.0000
odd	chr9:134360193-134360464(+)$1	271	37	40	9.0000
::g	chrX:20154147-20154360(-)$1	213	53	56	9.0000
:EE	chr19:2806759-2807049(+)$1	290	3	6	9.0000
mmm	chr22:50041306-50041556(-)$1	250	55	58	9.0000
::E	chr8:145107310-145107547(-)$1	237	3	6	9.0000
fff	chr3:128215811-128216106(+)$1	295	16	19	9.0000
ggg	chr6:133136389-133136616(+)$1	227	103	106	9.0000
Dii	chr9:123202110-123202419(-)$1	309	9	12	9.0000
!!c	chr3:194935512-194935724(+)$1	212	46	49	9.0000
[bb	chr12:6619543-6619753(+)$1	210	37	40	9.0000
MDD	chr19:1470156-1470430(-)$1	274	32	35	9.0000
fff	chr7:5569012-5569238(-)$1	226	79	82	9.0000
EEE	chr1:2199841-2200085(+)$1	244	20	23	9.0000
ddd	chr17:41464601-41464813(-)$1	212	13	16	9.0000
GGG	chr16:1370679-1370937(+)$1	258	38	41	9.0000
ggg	chrX:154003283-154003502(+)$1	219	32	35	9.0000
DDD	chr10:3176323-3176588(+)$1	265	72	75	9.0000
:::	chr1:28906182-28906388(-)$1	206	39	42	9.0000
KKC	chr1:1283590-1283838(-)$1	248	6	9	9.0000
ggg	chr10:102762093-102762429(+)$1	336	18	21	9.0000
fff	chr16:58582302-58582541(-)$1	239	123	126	9.0000
[gg	chr7:897313-897568(+)$1	255	57	60	9.0000
FF{	chr16:85676258-85676509(+)$1	251	73	76	9.0000
ggg	chr16:596505-596780(+)$1	275	15	18	9.0000
:::	chr16:88543522-88543822(+)$1	300	0	3	9.0000
:::	chr13:92001124-92001437(+)$1	313	26	29	9.0000
hhh	chr22:39709724-39709935(-)$1	211	32	35	9.0000
ddd	chr2:97554462-97554718(-)$1	256	21	24	9.0000
qqq	chr16:599475-599737(+)$1	262	172	175	9.0000
GGG	chr16:89022608-89022850(-)$1	242	8	11	9.0000
fff	chr11:586752-586998(+)$1	246	15	18	9.0000
[bb	chr12:6619567-6619771(+)$1	204	13	16	9.0000
22a	chr16:88967968-88968226(-)$1	258	212	215	9.0000
eee	chr11:821259-821483(+)$1	224	68	71	9.0000
KKE	chr9:140260958-140261229(-)$1	271	12	15	9.0000
::C	chr19:13059936-13060160(+)$1	224	0	3	9.0000
FFF	chr19:1645916-1646165(-)$1	249	5	8	9.0000
::D	chr3:48575930-48576205(-)$1	275	198	201	9.0000
fff	chr5:111497159-111497368(+)$1	209	135	138	9.0000
::G	chr17:80053252-80053495(-)$1	243	2	5	9.0000
ee:	chr16:88988917-88989156(-)$1	239	171	174	9.0000
B:c	chr22:50020775-50021004(-)$1	229	6	9	9.0000
===	chr12:57917648-57917935(+)$1	287	40	43	9.0000
fff	chr1:1688665-1688902(-)$1	237	108	111	9.0000
ccb	chr14:21731865-21732136(-)$1	271	9	12	9.0000
g[c	chr19:58903754-58904082(+)$1	328	28	31	9.0000
::C	chr17:47123096-47123369(+)$1	273	1	4	9.0000
ccc	chr3:15091311-15091602(-)$1	291	42	45	9.0000
ggg	chr16:89035474-89035742(-)$1	268	28	31	9.0000
ddd	chr3:126711682-126711925(+)$1	243	5	8	9.0000
ggg	chr2:97533517-97533802(-)$1	285	13	16	9.0000
iic	chr7:143079198-143079506(+)$1	308	43	46	9.0000
iii	chr19:6218578-6218800(-)$1	222	29	32	9.0000
:::	chr1:161130277-161130545(+)$1	268	0	3	9.0000
nnf	chr1:76252719-76252923(+)$1	204	47	50	9.0000
::E	chr2:74754854-74755143(-)$1	289	50	53	9.0000
EEE	chr19:1409592-1409843(+)$1	251	32	35	9.0000
cqq	chr19:59060210-59060448(+)$1	238	18	21	9.0000
fff	chr3:47449035-47449279(+)$1	244	45	48	9.0000
GGG	chr4:174255111-174255402(-)$1	291	37	40	9.0000

#DB
.))	chr13:45910348-45910582(-)$1	1	121	124	9.0000
).)	chr19:10270332-10270589(-)$1	1	152	155	9.0000
(.(	chr9:137253254-137253504(+)$1	1	112	115	9.0000
..(	chr12:6619510-6619717(+)$1	1	29	32	9.0000
)))	chr16:595543-595776(+)$1	1	120	123	9.0000
)))	chr19:6219523-6219795(-)$1	1	59	62	9.0000
(((	chr10:1046729-1047022(+)$1	1	7	10	9.0000
.))	chr9:137278271-137278542(+)$1	1	27	30	9.0000
)..	chr17:76167103-76167442(+)$1	1	67	70	9.0000
(((	chr5:138614388-138614605(+)$1	1	162	165	9.0000
(((	chr22:50013599-50013825(-)$1	1	5	8	9.0000
..)	chr12:6715471-6715770(-)$1	1	5	8	9.0000
(((	chr16:70571857-70572087(+)$1	1	37	40	9.0000
..(	chr7:1894652-1894911(-)$1	1	7	10	9.0000
).)	chr16:85658814-85659049(+)$1	1	168	171	9.0000
..(	chr19:893461-893673(+)$1	1	65	68	9.0000
(.(	chr19:49607480-49607696(+)$1	1	22	25	9.0000
)))	chr11:17096140-17096383(-)$1	1	63	66	9.0000
(((	chr16:85660705-85660933(+)$1	1	18	21	9.0000
..(	chr3:126710344-126710608(+)$1	1	88	91	9.0000
(((	chrX:153178945-153179198(-)$1	1	0	3	9.0000
(.(	chr17:79479452-79479706(-)$1	1	28	31	9.0000
(((	chr16:587338-587597(+)$1	1	32	35	9.0000
(..	chr16:85627770-85628012(+)$1	1	27	30	9.0000
(((	chr20:62332165-62332391(-)$1	1	36	39	9.0000
)).	chr3:186502491-186502724(+)$1	1	138	141	9.0000
).)	chr12:49048066-49048304(-)$1	1	54	57	9.0000
).(	chr9:140136789-140137121(+)$1	1	162	165	9.0000
(((	chr17:79881393-79881632(-)$1	1	97	100	9.0000
..(	chr15:91459439-91459670(+)$1	1	23	26	9.0000
(((	chr17:27071792-27072034(+)$1	1	31	34	9.0000
..)	chr19:799269-799482(+)$1	1	19	22	9.0000
...	chr16:89038933-89039177(-)$1	1	5	8	9.0000
)))	chr1:38453274-38453520(-)$1	1	11	14	9.0000
(((	chr8:145532779-145533026(+)$1	1	67	70	9.0000
(((	chr5:85916241-85916488(+)$1	1	37	40	9.0000
...	chr20:2637511-2637721(+)$1	1	54	57	9.0000
(((	chr12:56645734-56646023(-)$1	1	3	6	9.0000
.))	chr9:134360193-134360464(+)$1	1	37	40	9.0000
..(	chrX:20154147-20154360(-)$1	1	53	56	9.0000
.((	chr19:2806759-2807049(+)$1	1	3	6	9.0000
...	chr22:50041306-50041556(-)$1	1	55	58	9.0000
..(	chr8:145107310-145107547(-)$1	1	3	6	9.0000
(((	chr3:128215811-128216106(+)$1	1	16	19	9.0000
)))	chr6:133136389-133136616(+)$1	1	103	106	9.0000
(((	chr9:123202110-123202419(-)$1	1	9	12	9.0000
..(	chr3:194935512-194935724(+)$1	1	46	49	9.0000
.((	chr12:6619543-6619753(+)$1	1	37	40	9.0000
.((	chr19:1470156-1470430(-)$1	1	32	35	9.0000
)))	chr7:5569012-5569238(-)$1	1	79	82	9.0000
(((	chr1:2199841-2200085(+)$1	1	20	23	9.0000
(((	chr17:41464601-41464813(-)$1	1	13	16	9.0000
(((	chr16:1370679-1370937(+)$1	1	38	41	9.0000
)))	chrX:154003283-154003502(+)$1	1	32	35	9.0000
(((	chr10:3176323-3176588(+)$1	1	72	75	9.0000
...	chr1:28906182-28906388(-)$1	1	39	42	9.0000
..(	chr1:1283590-1283838(-)$1	1	6	9	9.0000
(((	chr10:102762093-102762429(+)$1	1	18	21	9.0000
)))	chr16:58582302-58582541(-)$1	1	123	126	9.0000
.((	chr7:897313-897568(+)$1	1	57	60	9.0000
((.	chr16:85676258-85676509(+)$1	1	73	76	9.0000
(((	chr16:596505-596780(+)$1	1	15	18	9.0000
...	chr16:88543522-88543822(+)$1	1	0	3	9.0000
...	chr13:92001124-92001437(+)$1	1	26	29	9.0000
)))	chr22:39709724-39709935(-)$1	1	32	35	9.0000
)))	chr2:97554462-97554718(-)$1	1	21	24	9.0000
...	chr16:599475-599737(+)$1	1	172	175	9.0000
(((	chr16:89022608-89022850(-)$1	1	8	11	9.0000
)))	chr11:586752-586998(+)$1	1	15	18	9.0000
.((	chr12:6619567-6619771(+)$1	1	13	16	9.0000
..)	chr16:88967968-88968226(-)$1	1	212	215	9.0000
(((	chr11:821259-821483(+)$1	1	68	71	9.0000
..(	chr9:140260958-140261229(-)$1	1	12	15	9.0000
..(	chr19:13059936-13060160(+)$1	1	0	3	9.0000
(((	chr19:1645916-1646165(-)$1	1	5	8	9.0000
..)	chr3:48575930-48576205(-)$1	1	198	201	9.0000
)))	chr5:111497159-111497368(+)$1	1	135	138	9.0000
..(	chr17:80053252-80053495(-)$1	1	2	5	9.0000
)).	chr16:88988917-88989156(-)$1	1	171	174	9.0000
(.(	chr22:50020775-50021004(-)$1	1	6	9	9.0000
(((	chr12:57917648-57917935(+)$1	1	40	43	9.0000
)))	chr1:1688665-1688902(-)$1	1	108	111	9.0000
(((	chr14:21731865-21732136(-)$1	1	9	12	9.0000
(.(	chr19:58903754-58904082(+)$1	1	28	31	9.0000
..(	chr17:47123096-47123369(+)$1	1	1	4	9.0000
(((	chr3:15091311-15091602(-)$1	1	42	45	9.0000
(((	chr16:89035474-89035742(-)$1	1	28	31	9.0000
(((	chr3:126711682-126711925(+)$1	1	5	8	9.0000
(((	chr2:97533517-97533802(-)$1	1	13	16	9.0000
(((	chr7:143079198-143079506(+)$1	1	43	46	9.0000
(((	chr19:6218578-6218800(-)$1	1	29	32	9.0000
...	chr1:161130277-161130545(+)$1	1	0	3	9.0000
..)	chr1:76252719-76252923(+)$1	1	47	50	9.0000
..(	chr2:74754854-74755143(-)$1	1	50	53	9.0000
(((	chr19:1409592-1409843(+)$1	1	32	35	9.0000
(..	chr19:59060210-59060448(+)$1	1	18	21	9.0000
)))	chr3:47449035-47449279(+)$1	1	45	48	9.0000
(((	chr4:174255111-174255402(-)$1	1	37	40	9.0000

#PSSM
G : 0.94	g : 0.05	
A : 0.94	a : 0.05	
G : 0.94	g : 0.05	

#score	882.0000000000001
#seq	98
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_CDS_m1_run1.nuc.txt

#NT
AAGGAAGAUGAAG	chr3:148905762-148905998(-)$1	236	120	133	17.3673
gaggaagaagaag	chr12:6879060-6879265(+)$1	205	47	60	22.7755
GCAGAAGGAGAAG	chr6:163982909-163983142(+)$1	233	104	117	22.7755
gaagaugaugaag	chr20:13756528-13756869(-)$1	341	132	145	19.9183
GAAGAAUUGGAAG	chr2:99977617-99977939(+)$1	322	86	99	19.6122
GAAGAAGGUGAAU	chr17:38317950-38318264(+)$1	314	58	71	21.9591
GAGGAAGGUGUAG	chr2:27656452-27656696(+)$1	244	141	154	16.9591
gaagaaggagaag	chr9:131456120-131456391(+)$1	271	72	85	27.1632
GAAGAAAGGCAAG	chr2:232326575-232326829(-)$1	254	115	128	19.3061
GAGGAAAAagaaa	chr17:80218790-80219032(-)$1	242	104	117	18.7959
UUagaaggagaag	chr9:100773498-100773772(+)$1	274	50	63	18.6938
GAAGAAAAAGAAG	chr12:76449760-76449996(-)$1	236	100	113	25.4285
GAAGAAAGAAAAA	chr2:167142742-167143014(-)$1	272	2	15	19.5102
AAAGAAGAAAAAG	chr2:71653642-71653884(+)$1	242	93	106	19.1020
GAAGAAUGUGAAU	chr12:76453476-76453693(-)$1	217	74	87	19.8163
AAAGAAAGAAAAG	chr6:144803243-144803454(+)$1	211	29	42	19.0000
GAAGACUCAGAAG	chr15:25616579-25616912(-)$1	333	195	208	17.8775
GAAGAAGGAGAUG	chr12:76442882-76443092(-)$1	210	71	84	23.0816
GAAGAAAAAGAAG	chr12:76449749-76449960(-)$1	211	64	77	25.4285
GAAAAAAGAGAGG	chr2:178080782-178081030(+)$1	248	71	84	17.6734
GGAGAAGAAGAAG	chr6:44219898-44220102(+)$1	204	18	31	21.8571
gaagaagaggaag	chr2:99992779-99993162(+)$1	383	89	102	23.5918
GAAGAAUGUGAUG	chr19:15383749-15384045(-)$1	296	111	124	19.1020
GAAGAAGCAGAAA	chr12:76446889-76447104(-)$1	215	25	38	21.5510
GAAGAACGAGAAC	chr10:120809209-120809533(-)$1	324	158	171	20.9387
GAAGAAGGUGAAG	chr19:57325131-57325400(-)$1	269	61	74	25.3265
gaagaagaagaag	chr17:4575312-4575588(-)$1	276	132	145	26.3469
gaggaagaagaag	chr4:174253076-174253336(-)$1	260	55	68	22.7755
GAAAAAGGAGAUG	chr5:145523968-145524216(-)$1	248	209	222	18.6938
GAAGAAAAAGAAG	chr12:76449796-76450042(-)$1	246	146	159	25.4285
gaggaagaagaag	chr16:11933712-11933952(-)$1	240	157	170	22.7755
GAUGAAGGUGAGG	chr6:144801010-144801219(+)$1	209	101	114	17.1632
gaagaaggggaau	chr11:35684889-35685222(+)$1	333	208	221	21.0408
AAAGAAAGAGAAA	chr17:78302062-78302369(+)$1	307	147	160	19.6122
gaaaaaagaaaag	chr4:73968002-73968292(-)$1	290	70	83	18.1836
GAUGAAGAUGAAG	chr2:71360537-71360807(+)$1	270	127	140	20.5306
GAAGAAAGCGAAG	chr6:26055947-26056206(-)$1	259	14	27	23.1836
uaagaagaagaaa	chr6:44218169-44218379(+)$1	210	1	14	19.3061
aaagaaagaaaag	chr2:99980751-99980967(+)$1	216	27	40	19.0000
GAAGAAAGUGAAA	chr1:171510097-171510374(+)$1	277	231	244	21.3469
AAAGAAAAUGAAG	chr14:56103917-56104182(+)$1	265	21	34	20.0204
GAAGAAUGUGAAU	chr12:76453493-76453740(-)$1	247	121	134	19.8163
gaagaaggagaag	chr9:136905069-136905429(-)$1	360	100	113	27.1632
GAAGAAGAAGAAG	chr12:6879264-6879484(+)$1	220	63	76	26.3469
GAAGAAAGAGACA	chr3:121414684-121414922(-)$1	238	203	216	18.8979
gcagaaagaaaag	chr1:171501931-171502194(+)$1	263	8	21	18.1836
GAAGCAGAAGAAG	chr15:66791721-66791967(-)$1	246	108	121	21.5510
GAAGAAGGUGAAG	chr12:76443434-76443638(-)$1	204	79	92	25.3265

#otherMatches

#Struct PSSM
:::::::::::::	chr2:187368780-187369079(+)$1	299	113	126	20.8367
!!ccc[dddd[bb	chr3:148905762-148905998(-)$1	236	120	133	17.3673
ffff:::::::::	chr12:6879060-6879265(+)$1	205	47	60	22.7755
ccc333ffffff]	chr6:163982909-163983142(+)$1	233	104	117	22.7755
]a22bb22eeeee	chr20:13756528-13756869(-)$1	341	132	145	19.9183
NNNNNIIIIIIII	chr2:99977617-99977939(+)$1	322	86	99	19.6122
=========5555	chr17:38317950-38318264(+)$1	314	58	71	21.9591
22bb::::eeeee	chr2:27656452-27656696(+)$1	244	141	154	16.9591
=============	chr9:131456120-131456391(+)$1	271	72	85	27.1632
dddeeeee]ccc:	chr2:232326575-232326829(-)$1	254	115	128	19.3061
gggccc]dddd::	chr17:80218790-80219032(-)$1	242	104	117	18.7959
==="""a^^^^^^	chr9:100773498-100773772(+)$1	274	50	63	18.6938
88888888cccee	chr12:76449760-76449996(-)$1	236	100	113	25.4285
:::::::::::::	chr2:167142742-167143014(-)$1	272	2	15	19.5102
occc]ccc]gggg	chr2:71653642-71653884(+)$1	242	93	106	19.1020
gggg22dddd:::	chr12:76453476-76453693(-)$1	217	74	87	19.8163
qddddffffff[b	chr6:144803243-144803454(+)$1	211	29	42	19.0000
IIIIIIII:::::	chr15:25616579-25616912(-)$1	333	195	208	17.8775
EEMMMMEEEEE{B	chr12:76442882-76443092(-)$1	210	71	84	23.0816
^^^^^^^^^^^^^	chr12:76449749-76449960(-)$1	211	64	77	25.4285
^^^^^^^^^^^^a	chr2:178080782-178081030(+)$1	248	71	84	17.6734
BQQQQQQQQGGGG	chr6:44219898-44220102(+)$1	204	18	31	21.8571
JJJJJJJJJ::::	chr2:99992779-99993162(+)$1	383	89	102	23.5918
ffwwwwwwwwwww	chr19:15383749-15384045(-)$1	296	111	124	19.1020
GGGGEEEEE::::	chr12:76446889-76447104(-)$1	215	25	38	21.5510
cnnnnnccc333d	chr10:120809209-120809533(-)$1	324	158	171	20.9387
:::a[hhhhhhhh	chr19:57325131-57325400(-)$1	269	61	74	25.3265
:::::::::::::	chr17:4575312-4575588(-)$1	276	132	145	26.3469
:::::::::::::	chr4:174253076-174253336(-)$1	260	55	68	22.7755
DDDYYGGGGGGG/	chr5:145523968-145524216(-)$1	248	209	222	18.6938
gggg22ddddfff	chr12:76449796-76450042(-)$1	246	146	159	25.4285
::BBZZZBB}CCC	chr16:11933712-11933952(-)$1	240	157	170	22.7755
&&ffffff[dddd	chr6:144801010-144801219(+)$1	209	101	114	17.1632
qqqqqqbb::::d	chr11:35684889-35685222(+)$1	333	208	221	21.0408
vvvvvvvvvvvvv	chr17:78302062-78302369(+)$1	307	147	160	19.6122
22bbdddd333dd	chr4:73968002-73968292(-)$1	290	70	83	18.1836
333ffffff]bb:	chr2:71360537-71360807(+)$1	270	127	140	20.5306
:::::::bboooo	chr6:26055947-26056206(-)$1	259	14	27	23.1836
::::::::DDDDK	chr6:44218169-44218379(+)$1	210	1	14	19.3061
:::::::::::::	chr2:99980751-99980967(+)$1	216	27	40	19.0000
dd]a4444ccc55	chr1:171510097-171510374(+)$1	277	231	244	21.3469
GEEEEELLLGGGG	chr14:56103917-56104182(+)$1	265	21	34	20.0204
gggg22ccc:ccc	chr12:76453493-76453740(-)$1	247	121	134	19.8163
^^^^^^bb]a666	chr9:136905069-136905429(-)$1	360	100	113	27.1632
d]bb4444eeeee	chr12:6879264-6879484(+)$1	220	63	76	26.3469
dd::::HHHHHHH	chr3:121414684-121414922(-)$1	238	203	216	18.8979
:::::::::::::	chr1:171501931-171502194(+)$1	263	8	21	18.1836
))a[ddddppppp	chr15:66791721-66791967(-)$1	246	108	121	21.5510
b]ffffff]dddd	chr12:76443434-76443638(-)$1	204	79	92	25.3265

#DB
.............	chr2:187368780-187369079(+)$1	1	113	126	20.8367
..(((.((((.((	chr3:148905762-148905998(-)$1	1	120	133	17.3673
)))).........	chr12:6879060-6879265(+)$1	1	47	60	22.7755
)))...)))))).	chr6:163982909-163983142(+)$1	1	104	117	22.7755
.)..))..)))))	chr20:13756528-13756869(-)$1	1	132	145	19.9183
.....((((((((	chr2:99977617-99977939(+)$1	1	86	99	19.6122
)))))))))....	chr17:38317950-38318264(+)$1	1	58	71	21.9591
..))....(((((	chr2:27656452-27656696(+)$1	1	141	154	16.9591
)))))))))))))	chr9:131456120-131456391(+)$1	1	72	85	27.1632
)))))))).))).	chr2:232326575-232326829(-)$1	1	115	128	19.3061
)))))).))))..	chr17:80218790-80219032(-)$1	1	104	117	18.7959
(((...(......	chr9:100773498-100773772(+)$1	1	50	63	18.6938
........)))))	chr12:76449760-76449996(-)$1	1	100	113	25.4285
.............	chr2:167142742-167143014(-)$1	1	2	15	19.5102
.))).))).))))	chr2:71653642-71653884(+)$1	1	93	106	19.1020
))))..))))...	chr12:76453476-76453693(-)$1	1	74	87	19.8163
.))))((((((.(	chr6:144803243-144803454(+)$1	1	29	42	19.0000
)))))))).....	chr15:25616579-25616912(-)$1	1	195	208	17.8775
((....(((((.(	chr12:76442882-76443092(-)$1	1	71	84	23.0816
.............	chr12:76449749-76449960(-)$1	1	64	77	25.4285
............)	chr2:178080782-178081030(+)$1	1	71	84	17.6734
(........((((	chr6:44219898-44220102(+)$1	1	18	31	21.8571
(((((((((....	chr2:99992779-99993162(+)$1	1	89	102	23.5918
((...........	chr19:15383749-15384045(-)$1	1	111	124	19.1020
(((((((((....	chr12:76446889-76447104(-)$1	1	25	38	21.5510
(.....)))...)	chr10:120809209-120809533(-)$1	1	158	171	20.9387
...(.((((((((	chr19:57325131-57325400(-)$1	1	61	74	25.3265
.............	chr17:4575312-4575588(-)$1	1	132	145	26.3469
.............	chr4:174253076-174253336(-)$1	1	55	68	22.7755
)))..))))))).	chr5:145523968-145524216(-)$1	1	209	222	18.6938
))))..)))))))	chr12:76449796-76450042(-)$1	1	146	159	25.4285
..))...)).)))	chr16:11933712-11933952(-)$1	1	157	170	22.7755
..((((((.((((	chr6:144801010-144801219(+)$1	1	101	114	17.1632
......))....(	chr11:35684889-35685222(+)$1	1	208	221	21.0408
.............	chr17:78302062-78302369(+)$1	1	147	160	19.6122
..))))))...))	chr4:73968002-73968292(-)$1	1	70	83	18.1836
...)))))).)).	chr2:71360537-71360807(+)$1	1	127	140	20.5306
.......((....	chr6:26055947-26056206(-)$1	1	14	27	23.1836
........((((.	chr6:44218169-44218379(+)$1	1	1	14	19.3061
.............	chr2:99980751-99980967(+)$1	1	27	40	19.0000
)).)....)))..	chr1:171510097-171510374(+)$1	1	231	244	21.3469
((((((...((((	chr14:56103917-56104182(+)$1	1	21	34	20.0204
))))..))).(((	chr12:76453493-76453740(-)$1	1	121	134	19.8163
......)).)...	chr9:136905069-136905429(-)$1	1	100	113	27.1632
).))....)))))	chr12:6879264-6879484(+)$1	1	63	76	26.3469
))....)))))))	chr3:121414684-121414922(-)$1	1	203	216	18.8979
.............	chr1:171501931-171502194(+)$1	1	8	21	18.1836
..(.((((.....	chr15:66791721-66791967(-)$1	1	108	121	21.5510
).)))))).))))	chr12:76443434-76443638(-)$1	1	79	92	25.3265

#PSSM
G : 0.61	g : 0.22	A : 0.10	U : 0.02	u : 0.02	a : 0.02	
A : 0.67	a : 0.24	C : 0.02	U : 0.02	G : 0.02	c : 0.02	
A : 0.61	a : 0.22	G : 0.06	g : 0.06	U : 0.04	
G : 0.67	g : 0.26	A : 0.04	a : 0.02	
A : 0.69	a : 0.28	C : 0.02	
A : 0.67	a : 0.26	G : 0.02	u : 0.02	C : 0.02	
G : 0.30	A : 0.28	g : 0.22	U : 0.10	a : 0.06	C : 0.02	
G : 0.40	A : 0.24	a : 0.14	g : 0.14	C : 0.04	U : 0.02	
A : 0.38	U : 0.24	a : 0.24	G : 0.04	g : 0.04	u : 0.02	C : 0.02	
G : 0.61	g : 0.24	A : 0.06	a : 0.06	C : 0.02	
A : 0.67	a : 0.30	U : 0.02	
A : 0.57	a : 0.30	U : 0.06	G : 0.04	C : 0.02	
G : 0.51	g : 0.24	A : 0.10	U : 0.06	a : 0.04	C : 0.02	u : 0.02	

#score	1038.142857142858
#seq	49
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_transcript_m1_run2.nuc.txt

#NT
GUUUUGUAUUU	chr18:19449885-19450153(+)$1	268	63	74	18.6730
AUUUUGUUUAU	chr17:25640370-25640596(+)$1	226	50	61	18.8653
AUUUUUUUUUU	chr8:23429353-23429635(+)$1	282	94	105	22.4230
UUUUUUUCUUU	chr8:11696071-11696364(+)$1	293	92	103	20.9807
UUUUUCUUUUU	chr15:34819538-34819779(-)$1	241	162	173	24.3461
UUUUUAUUGUU	chrX:122734817-122735040(-)$1	223	193	204	19.9230
uuuuuuuuuuu	chr12:123893036-123893303(+)$1	267	77	88	25.2115
UUUUUGUAUAU	chr6:43753584-43753829(+)$1	245	92	103	17.7115
UUUUUGUUUUG	chr1:27108257-27108473(+)$1	216	80	91	21.9423
UUUUUGuuuuu	chr13:107195907-107196163(-)$1	256	194	205	25.9807
uuuuucuuuuu	chr1:113212900-113213157(+)$1	257	78	89	24.3461
UUUUUUCUUUU	chr1:114935356-114935713(-)$1	357	142	153	20.5000
UUUUUGUUGUU	chr6:17615427-17615653(-)$1	226	66	77	21.7499
uuuuuguuuuu	chr5:176946705-176946947(-)$1	242	60	71	25.9807
AUUUUGUUUUG	chr1:28218265-28218555(-)$1	290	45	56	19.1538
UUUAUAUUUUU	chr3:194123412-194123663(-)$1	251	108	119	19.5384
UUUUUCUUCUU	chr1:203822274-203822547(+)$1	273	29	40	20.0192
UUUUUAUAUUU	chr20:45838928-45839179(-)$1	251	45	56	20.2115
CUUUUUUUUUU	chr2:85771521-85771800(+)$1	279	262	273	21.7500
UUUUUGUGUUU	chr4:129029867-129030126(+)$1	259	201	212	21.8461
UUUUUUUUUUU	chr20:34633665-34633932(-)$1	267	90	101	25.2115
UUUUUGUUUUU	chr2:61705127-61705367(-)$1	240	25	36	25.9807
UCuuuuuuuuu	chr3:37030403-37030695(-)$1	292	279	290	20.5000
uuuuuuuuuuu	chr5:179041762-179042019(-)$1	257	212	223	25.2115
UUUUUUUUUUU	chr12:69667809-69668081(+)$1	272	80	91	25.2115
UUUUUUUUUUU	chr22:32353304-32353614(+)$1	310	87	98	25.2115
GUUUUCUUUUU	chr22:38879473-38879731(-)$1	258	246	257	20.9807
uuuuuuuuuuu	chr19:18390661-18390967(-)$1	306	90	101	25.2115
GUUUUGUUAUU	chr16:66755282-66755518(-)$1	236	92	103	18.4807
uuuuucuuuuu	chr15:50852551-50852825(-)$1	274	75	86	24.3461
uuuuuauuuuu	chr9:100688988-100689209(-)$1	221	75	86	24.1538
UUUUUGuuuuu	chr13:107195850-107196107(-)$1	257	138	149	25.9807
UUUUUGUGUUU	chrX:70459447-70459705(-)$1	258	51	62	21.8461
uuuuuuuuuuu	chr16:30003327-30003595(+)$1	268	84	95	25.2115
UUUUUGUUAUU	chr4:123283691-123283974(+)$1	283	12	23	21.8461
UUUUUUUUUUU	chr5:145890580-145890898(+)$1	318	29	40	25.2115
AUUUUGUUUUG	chr5:130977602-130977836(-)$1	234	190	201	19.1538
AUUUUGUUUUA	chr15:63900732-63900977(-)$1	245	90	101	18.8653
auuuuguuuuu	chr1:173901143-173901396(-)$1	253	9	20	23.1923
UUUCUAUUUUU	chr1:158580668-158581040(-)$1	372	253	264	19.5384
UUUUUCUUUUG	chr12:131274483-131274763(-)$1	280	47	58	20.3076
AUUUCGUUUUU	chr1:203823037-203823282(+)$1	245	10	21	18.3846
AUUUUGUUUCU	chr5:6599643-6599912(-)$1	269	97	108	18.6730
CUUUUUUUUUU	chr16:2820991-2821287(+)$1	296	21	32	21.7500
UUUUUUUUUAU	chr1:40026462-40026687(-)$1	225	98	109	20.8846
AUUUUGUUAUU	chr4:159631677-159631924(-)$1	247	175	186	19.0576
UAUUUGUAUUU	chr1:21069362-21069654(-)$1	292	83	94	17.3269
uuuuuuuuuuu	chr1:97279141-97279440(+)$1	299	76	87	25.2115
UUUUUGUUUUC	chr2:61705015-61705309(-)$1	294	10	21	21.6538
UUUUUCAUUUU	chr12:132564822-132565087(+)$1	265	184	195	19.6346
UUUUUGUUUUU	chr16:67918143-67918403(+)$1	260	206	217	25.9807

#otherMatches

#Struct PSSM
gggg9999999	chr12:131274228-131274503(-)$1	275	63	74	21.3653
FFFF{EEEEED	chr18:19449885-19450153(+)$1	268	63	74	18.6730
e!!ffffffqq	chr17:25640370-25640596(+)$1	226	50	61	18.8653
:::::::::::	chr8:23429353-23429635(+)$1	282	94	105	22.4230
qqqccc]eeee	chr8:11696071-11696364(+)$1	293	92	103	20.9807
:::::::::::	chr15:34819538-34819779(-)$1	241	162	173	24.3461
::ddddnnnnn	chrX:122734817-122735040(-)$1	223	193	204	19.9230
eeeee]eeeee	chr12:123893036-123893303(+)$1	267	77	88	25.2115
qqqqqeeeee:	chr6:43753584-43753829(+)$1	245	92	103	17.7115
dd^^^^^^^^^	chr1:27108257-27108473(+)$1	216	80	91	21.9423
=====[=====	chr13:107195907-107196163(-)$1	256	194	205	25.9807
:::::::::::	chr1:113212900-113213157(+)$1	257	78	89	24.3461
ooooooccc77	chr1:114935356-114935713(-)$1	357	142	153	20.5000
f333ffffff:	chr6:17615427-17615653(-)$1	226	66	77	21.7499
NNNGGGGGGG:	chr5:176946705-176946947(-)$1	242	60	71	25.9807
88888ffffff	chr1:28218265-28218555(-)$1	290	45	56	19.1538
!!ddddsssss	chr3:194123412-194123663(-)$1	251	108	119	19.5384
:::::::::::	chr1:203822274-203822547(+)$1	273	29	40	20.0192
ffffff"""dd	chr20:45838928-45839179(-)$1	251	45	56	20.2115
:::::::::::	chr2:85771521-85771800(+)$1	279	262	273	21.7500
eee!!ddddss	chr4:129029867-129030126(+)$1	259	201	212	21.8461
^^^^^^^^^^^	chr20:34633665-34633932(-)$1	267	90	101	25.2115
MJJJJJJJJJJ	chr2:61705127-61705367(-)$1	240	25	36	25.9807
eJJJJJJJJJJ	chr3:37030403-37030695(-)$1	292	279	290	20.5000
=====]dddd]	chr5:179041762-179042019(-)$1	257	212	223	25.2115
!ccc!!eeeee	chr12:69667809-69668081(+)$1	272	80	91	25.2115
hvvvvvvvvvv	chr22:32353304-32353614(+)$1	310	87	98	25.2115
5555ffffff:	chr22:38879473-38879731(-)$1	258	246	257	20.9807
::=========	chr19:18390661-18390967(-)$1	306	90	101	25.2115
ooooooggggg	chr16:66755282-66755518(-)$1	236	92	103	18.4807
:::::::::::	chr15:50852551-50852825(-)$1	274	75	86	24.3461
4444iiiiiii	chr9:100688988-100689209(-)$1	221	75	86	24.1538
=====[=====	chr13:107195850-107196107(-)$1	257	138	149	25.9807
dd"""ccc%%%	chrX:70459447-70459705(-)$1	258	51	62	21.8461
^^^^^^^^^^^	chr16:30003327-30003595(+)$1	268	84	95	25.2115
gggggeeeee[	chr4:123283691-123283974(+)$1	283	12	23	21.8461
EE::::::::h	chr5:145890580-145890898(+)$1	318	29	40	25.2115
xxxxbbggggg	chr5:130977602-130977836(-)$1	234	190	201	19.1538
JJJJJJJJJJL	chr15:63900732-63900977(-)$1	245	90	101	18.8653
$$$iiiiiiii	chr1:173901143-173901396(-)$1	253	9	20	23.1923
===========	chr1:158580668-158581040(-)$1	372	253	264	19.5384
uuuuuuuuuee	chr12:131274483-131274763(-)$1	280	47	58	20.3076
ffffffmmmmf	chr1:203823037-203823282(+)$1	245	10	21	18.3846
::JJJJJJJJJ	chr5:6599643-6599912(-)$1	269	97	108	18.6730
==!!eeeee[c	chr16:2820991-2821287(+)$1	296	21	32	21.7500
===========	chr1:40026462-40026687(-)$1	225	98	109	20.8846
FFFFFF~~~~G	chr4:159631677-159631924(-)$1	247	175	186	19.0576
&==========	chr1:21069362-21069654(-)$1	292	83	94	17.3269
:::::::::::	chr1:97279141-97279440(+)$1	299	76	87	25.2115
mmmeeeee]bb	chr2:61705015-61705309(-)$1	294	10	21	21.6538
]bb]ccc333g	chr12:132564822-132565087(+)$1	265	184	195	19.6346
dd!!ffffffl	chr16:67918143-67918403(+)$1	260	206	217	25.9807

#DB
)))).......	chr12:131274228-131274503(-)$1	1	63	74	21.3653
((((.((((((	chr18:19449885-19450153(+)$1	1	63	74	18.6730
(..((((((..	chr17:25640370-25640596(+)$1	1	50	61	18.8653
...........	chr8:23429353-23429635(+)$1	1	94	105	22.4230
...))).))))	chr8:11696071-11696364(+)$1	1	92	103	20.9807
...........	chr15:34819538-34819779(-)$1	1	162	173	24.3461
..((((.....	chrX:122734817-122735040(-)$1	1	193	204	19.9230
))))).)))))	chr12:123893036-123893303(+)$1	1	77	88	25.2115
.....))))).	chr6:43753584-43753829(+)$1	1	92	103	17.7115
((.........	chr1:27108257-27108473(+)$1	1	80	91	21.9423
(((((.(((((	chr13:107195907-107196163(-)$1	1	194	205	25.9807
...........	chr1:113212900-113213157(+)$1	1	78	89	24.3461
......)))..	chr1:114935356-114935713(-)$1	1	142	153	20.5000
)...)))))).	chr6:17615427-17615653(-)$1	1	66	77	21.7499
...(((((((.	chr5:176946705-176946947(-)$1	1	60	71	25.9807
.....))))))	chr1:28218265-28218555(-)$1	1	45	56	19.1538
..((((.....	chr3:194123412-194123663(-)$1	1	108	119	19.5384
...........	chr1:203822274-203822547(+)$1	1	29	40	20.0192
((((((...((	chr20:45838928-45839179(-)$1	1	45	56	20.2115
...........	chr2:85771521-85771800(+)$1	1	262	273	21.7500
(((..((((..	chr4:129029867-129030126(+)$1	1	201	212	21.8461
...........	chr20:34633665-34633932(-)$1	1	90	101	25.2115
.((((((((((	chr2:61705127-61705367(-)$1	1	25	36	25.9807
)))))))))))	chr3:37030403-37030695(-)$1	1	279	290	20.5000
))))).)))).	chr5:179041762-179042019(-)$1	1	212	223	25.2115
.(((..(((((	chr12:69667809-69668081(+)$1	1	80	91	25.2115
(..........	chr22:32353304-32353614(+)$1	1	87	98	25.2115
....)))))).	chr22:38879473-38879731(-)$1	1	246	257	20.9807
..(((((((((	chr19:18390661-18390967(-)$1	1	90	101	25.2115
......)))))	chr16:66755282-66755518(-)$1	1	92	103	18.4807
...........	chr15:50852551-50852825(-)$1	1	75	86	24.3461
....)))))))	chr9:100688988-100689209(-)$1	1	75	86	24.1538
(((((.(((((	chr13:107195850-107196107(-)$1	1	138	149	25.9807
((...(((...	chrX:70459447-70459705(-)$1	1	51	62	21.8461
...........	chr16:30003327-30003595(+)$1	1	84	95	25.2115
((((((((((.	chr4:123283691-123283974(+)$1	1	12	23	21.8461
((........(	chr5:145890580-145890898(+)$1	1	29	40	25.2115
....)))))))	chr5:130977602-130977836(-)$1	1	190	201	19.1538
((((((((((.	chr15:63900732-63900977(-)$1	1	90	101	18.8653
...((((((((	chr1:173901143-173901396(-)$1	1	9	20	23.1923
)))))))))))	chr1:158580668-158581040(-)$1	1	253	264	19.5384
.........))	chr12:131274483-131274763(-)$1	1	47	58	20.3076
((((((....)	chr1:203823037-203823282(+)$1	1	10	21	18.3846
..(((((((((	chr5:6599643-6599912(-)$1	1	97	108	18.6730
((..(((((.(	chr16:2820991-2821287(+)$1	1	21	32	21.7500
(((((((((((	chr1:40026462-40026687(-)$1	1	98	109	20.8846
))))))....)	chr4:159631677-159631924(-)$1	1	175	186	19.0576
.((((((((((	chr1:21069362-21069654(-)$1	1	83	94	17.3269
...........	chr1:97279141-97279440(+)$1	1	76	87	25.2115
...))))).))	chr2:61705015-61705309(-)$1	1	10	21	21.6538
.)).)))...)	chr12:132564822-132565087(+)$1	1	184	195	19.6346
((..((((((.	chr16:67918143-67918403(+)$1	1	206	217	25.9807

#PSSM
U : 0.55	u : 0.17	A : 0.15	G : 0.05	C : 0.03	a : 0.01	
U : 0.76	u : 0.19	C : 0.01	A : 0.01	
U : 0.78	u : 0.21	
U : 0.73	u : 0.21	G : 0.01	A : 0.01	C : 0.01	
U : 0.76	u : 0.21	C : 0.01	
G : 0.42	U : 0.19	u : 0.11	C : 0.09	A : 0.07	c : 0.03	g : 0.03	a : 0.01	
U : 0.71	u : 0.24	C : 0.01	A : 0.01	
U : 0.61	u : 0.24	A : 0.07	G : 0.03	C : 0.01	
U : 0.63	u : 0.24	A : 0.05	G : 0.03	C : 0.01	
U : 0.67	u : 0.24	A : 0.05	C : 0.01	
U : 0.63	u : 0.24	G : 0.07	A : 0.01	C : 0.01	

#score	1142.7307692307695
#seq	52
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_CDS_m2_run1.nuc.txt

#NT
AGAAACCCACUGUGUAACUUGCUGUCAUUUACUUACAAACUGGAUCCAGGGGGUCAGUCCUUCCCGUUCUGUGCUAGAUUGCUGUAUAAGGACCUCACAGCAACUCUUCCCACUGACGUCACCGUGACAUGUCAAGGUAAGAAGGGUGCCUCAGUGCAGAAAUUCUCAUAUCCCAGUUUAUUUGAGUGAAACAGGGAAAAUAGGUAGAAUCCAUGAAGUAGACCUCUUGAGACACUUUCUCUGUUUAUAUACUGUACAUUACUCAGACCGGUAAGAUAG	chr2:25039537-25039830(+)$1	293	13	292	369.5000

#otherMatches

#Struct PSSM
fffmmmmffffffffffffbbmmmmbb]ffffff:::::::::gggggggbbnnnnnbb]ggggggg::::::::::::::GGGGGGGEEEEEQQQQQQQQFFFFFF{CCCccc[cccqqqqqqqqccc]ccc::ccc[hhhhhhhhmmmmhhhhhhhh]ccc:CCC}FFFFFFEEEEE~~~~GGGGGGGDDDD}GGGGGGG::::::::::::::::iiiiiiiiicccbbpppppppbb]ccc>>>>>>>>>>>iiiiiiiii:EEEEE}DDDD}DD	chr11:93528086-93528417(+)$1	331	41	320	369.5000
IIIII:ccc"""eeeeexxxxxxxxxxxxxxxeeeee333ccc:BBIIIIIIIIIMMMMDDDD:::IIIIIIIIIBB::fffffftttttttttttffffffgggggggbb!!ddddddddllldddd22dddd]bb333ggggggg::BB}IIIIIIIII:::::::::dddd[ddddrrrrrrrrrdddd]dddd:::::bboooooobb::DDDDYYIIIIIIIII}BBZZZIIIIIIIII:::::::dddd[a[eeeeeooooooeeeeeadddd	chr2:25039537-25039830(+)$1	293	13	292	369.5000

#DB
(((....))))))((((((((....)).)))))).........(((((((((.....)).)))))))..............((((((((((((........((((((.((((((.(((........))).)))..(((.((((((((....)))))))).))).))).)))))))))))....))))))))))).)))))))................((((((((((((((.......)).)))...........))))))))).))))).)))).))	chr11:93528086-93528417(+)$1	1	41	320	369.5000
(((((.(((...(((((...............)))))...))).(((((((((((....((((...(((((((((((..((((((...........))))))(((((((((..((((((((...))))..)))).))...)))))))..)).))))))))).........((((.((((.........)))).)))).....((......))..))))..))))))))).))...))))))))).......((((.(.(((((......))))))))))	chr2:25039537-25039830(+)$1	1	13	292	369.5000

#PSSM
A : 1.00	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
U : 1.00	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
U : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
U : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 1.00	
U : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
A : 0.50	C : 0.50	
U : 1.00	
U : 1.00	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
U : 1.00	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
A : 0.50	U : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
A : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	U : 0.50	
U : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 1.00	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
A : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
G : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
U : 0.50	C : 0.50	
A : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	A : 0.50	
A : 1.00	
G : 0.50	A : 0.50	
C : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 0.50	U : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
A : 1.00	
U : 0.50	A : 0.50	
A : 0.50	U : 0.50	
G : 0.50	C : 0.50	
U : 0.50	C : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
A : 0.50	G : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
A : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
C : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 0.50	U : 0.50	
A : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
A : 0.50	U : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
U : 1.00	
A : 0.50	U : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
A : 1.00	
A : 0.50	C : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
U : 0.50	C : 0.50	
A : 1.00	
C : 0.50	U : 0.50	
U : 1.00	
G : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 1.00	
A : 0.50	G : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
U : 1.00	
C : 0.50	A : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
U : 0.50	A : 0.50	
C : 0.50	U : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	

#score	739.0
#seq	2
#width	279
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_transcript_m1_run2.nuc.txt

#NT
cGUGUCCUGGAGGAGGCGGCCCGCAGGGCGGGACAGGGCGGGGCGGGGGCAGGUCCCGGCCGCCGGGAGGAAGUGGCCGGGCGGUCGCAGGGACUCCGGGGCGACCGCCGCGAGUCCGCAGUAGUUCGGGCCAUGGAGGCGGAGCCGCCGCUCUACCCGAUGGCGGGGGCUGCGGGGCCGCAGGGCGACGAGGACCUGCUCGGGGUCCCGGACGGGCCCGAGGCCCCGGUGAGCGGGGACCCGGAGUGCGAGGCGCGGGCGUCCCCUGUGGGCCAGGGUccccccggcgggggcggggcgggccggggggcggcgggcaccgggggACA	chr11:67771312-67771671(-)$1	359	26	355	464.5000

#otherMatches

#Struct PSSM
qqqqccc4444iiiiiiiii::::::::::::::GGGGGGG::::bb[ddddmmmmdddd]bbeeeeellleeeeeHHHHHHHHgggggggbb[bb####bb[bb[bb[ccc[a[eeeeeooooooeeeee]a]ccc]bbbb]bb]bb]bb]ggggggg::::::::::HHHHHHHHMMMMBB{CCC{CCC{CCC{EEEEEhhhhhhhh[aooooooa22hhhhhhhh::::::eeeeemmmmeeeeeEEEEE}CCCCCCCCCYYBBYYHHHHHHHHeeeee$$$$$ccc!!bb####cccmmmmccc4444bb22ccc55555eeeee	chr8:101321915-101322277(-)$1	362	17	346	464.5000
GGGGGGGEEEEEKKFFFFFFDDDD:bb[ffffff!!a[aqqqqqqqqa]a22ffffff]bbccc[ccc####ddddabbiiiiiiiii[bbmmmmbb333iiiiiiiii]bb]a]dddd55555ccc]ccc:::::::DDDD}FFFFFF}EEEEEdddd[a[bb[ffffff[dddd[ccca[dddd!!ddddoooooodddd22dddd22a]ccc]dddd]ffffff]bb]a]dddd::EEEEE:ddddllldddd:a[hhhhhhhh"""dddd!!a[cccddddmmmmdddd]ccc]a]ddddhhhhhhhh]a:::::EEEEEGGGGG	chr11:67771312-67771671(-)$1	359	26	355	464.5000

#DB
....)))....)))))))))..............(((((((....((.((((....)))).))(((((...)))))(((((((((((((((((.((....((.((.((.(((.(.(((((......))))).).))).)))).)).)).)).)))))))..........((((((((....((.(((.(((.(((.(((((((((((((.(......)..))))))))......(((((....)))))))))).)))))))))..))..))))))))(((((.....(((..((....(((....)))....))..))).....)))))	chr8:101321915-101322277(-)$1	1	17	346	464.5000
((((((((((((..((((((((((.((.((((((..(.(........).)..)))))).))(((.(((....((((((((((((((((.((....))...))))))))).)).).)))).....))).))).......)))).)))))).)))))((((.(.((.((((((.((((.((((.((((..((((......))))..))))..).))).)))).)))))).)).).))))..(((((.((((...)))).(.((((((((...((((..(.(((((((....)))).))).).)))))))))))).).....))))))))))	chr11:67771312-67771671(-)$1	1	26	355	464.5000

#PSSM
G : 0.50	c : 0.50	
C : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 0.50	U : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
C : 1.00	
U : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
G : 0.50	A : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
U : 0.50	G : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 1.00	
A : 0.50	G : 0.50	
C : 0.50	A : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
U : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 0.50	A : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	C : 0.50	
G : 0.50	U : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
C : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
C : 1.00	
U : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
A : 1.00	
G : 1.00	
A : 0.50	U : 0.50	
U : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
U : 1.00	
A : 1.00	
C : 0.50	G : 0.50	
U : 1.00	
C : 0.50	U : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
G : 1.00	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
G : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 0.50	A : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 0.50	A : 0.50	
U : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
A : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
U : 0.50	G : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
G : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 0.50	C : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
A : 0.50	G : 0.50	
G : 0.50	C : 0.50	
G : 1.00	
A : 1.00	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 0.50	G : 0.50	
G : 1.00	
G : 0.50	U : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
A : 1.00	
A : 0.50	C : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
G : 1.00	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	C : 0.50	
C : 1.00	
G : 0.50	C : 0.50	
C : 1.00	
U : 0.50	G : 0.50	
U : 0.50	G : 0.50	
A : 0.50	U : 0.50	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
A : 0.50	G : 0.50	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
G : 0.50	A : 0.50	
G : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
C : 0.50	A : 0.50	
U : 0.50	G : 0.50	
G : 0.50	U : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
G : 0.50	A : 0.50	
G : 1.00	
G : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 0.50	G : 0.50	
A : 0.50	G : 0.50	
G : 1.00	
C : 1.00	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
U : 0.50	C : 0.50	
A : 0.50	C : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
G : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	U : 0.50	
C : 0.50	G : 0.50	
C : 0.50	G : 0.50	
U : 0.50	G : 0.50	
G : 0.50	C : 0.50	
C : 1.00	
C : 0.50	A : 0.50	
C : 0.50	G : 0.50	
G : 1.00	
G : 1.00	
G : 0.50	U : 0.50	
A : 0.50	c : 0.50	
C : 0.50	c : 0.50	
A : 0.50	c : 0.50	
G : 0.50	c : 0.50	
A : 0.50	c : 0.50	
A : 0.50	c : 0.50	
A : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
U : 0.50	g : 0.50	
U : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	c : 0.50	
C : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	c : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
G : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	c : 0.50	
G : 0.50	g : 0.50	
C : 0.50	g : 0.50	
G : 0.50	c : 0.50	
U : 0.50	g : 0.50	
C : 0.50	g : 0.50	
U : 0.50	g : 0.50	
C : 0.50	c : 0.50	
C : 0.50	a : 0.50	
U : 0.50	c : 0.50	
C : 0.50	c : 0.50	
C : 0.50	g : 0.50	
A : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	g : 0.50	
G : 0.50	g : 0.50	
U : 0.50	A : 0.50	
C : 1.00	
C : 0.50	A : 0.50	

#score	929.0
#seq	2
#width	329
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_UTR_m2_run2.nuc.txt

#NT
GCCCUGC	chr1:227919586-227919840(-)$1	254	13	20	17.4925
GCCCUUC	chrX:128939520-128939772(-)$1	252	180	187	13.6119
GACCUGC	chr20:3847222-3847548(+)$1	326	15	22	13.6119
GGCCUGC	chr19:47712526-47712798(+)$1	272	223	230	13.3880
GCCCUGC	chr7:5347569-5347854(-)$1	285	127	134	17.4925
GCCCUGA	chr17:72443067-72443392(+)$1	325	139	146	13.3880
CCCCUGC	chr17:42270735-42271011(-)$1	276	136	143	13.6119
GCCCUCC	chr12:131623993-131624269(+)$1	276	19	26	13.5373
GCCCUGC	chr22:18074924-18075342(-)$1	418	239	246	17.4925
GCCCUGG	chr11:770605-770866(-)$1	261	68	75	13.5373
gcccugg	chr16:54146221-54146500(+)$1	279	114	121	13.5373
GCCCUGC	chr21:46933228-46933473(+)$1	245	146	153	17.4925
UCCCUGC	chr12:50157759-50158025(+)$1	266	156	163	13.9104
GACCUGC	chr19:15359218-15359473(-)$1	255	167	174	13.6119
CCCCUGC	chr1:65898584-65898878(+)$1	294	175	182	13.6119
GCCCUGA	chr3:48556491-48556748(-)$1	257	44	51	13.3880
UCCCUGC	chr9:124544781-124545046(+)$1	265	122	129	13.9104
GUCCUGC	chr16:85009110-85009348(-)$1	238	140	147	13.7611
GCCCUGC	chr17:79879807-79880072(-)$1	265	248	255	17.4925
GCCCUAC	chr19:5151595-5151837(+)$1	242	215	222	13.3134
GUCCUGC	chr17:21218100-21218420(+)$1	320	32	39	13.7611
UCCCUGC	chr19:6414710-6414973(-)$1	263	35	42	13.9104
ACCCUGC	chr9:136229433-136229642(-)$1	209	76	83	13.5373
GCCCUUC	chr6:36891505-36891754(+)$1	249	6	13	13.6119
GCCCUGC	chr9:136335019-136335295(+)$1	276	117	124	17.4925
GCCCUGA	chr14:23778278-23778524(+)$1	246	208	215	13.3880
GCCCUGC	chr1:6694828-6695075(-)$1	247	53	60	17.4925
CCCCUGC	chr17:40851198-40851504(+)$1	306	181	188	13.6119
GCCCAGC	chr9:137328596-137328838(+)$1	242	108	115	13.2388
GUCCUGC	chr16:29869965-29870218(-)$1	253	150	157	13.7611
UCCCUGC	chr17:40126521-40126839(+)$1	318	129	136	13.9104
UCCCUGC	chr17:79525695-79525991(-)$1	296	96	103	13.9104
GCCCUGC	chr17:74676506-74676799(-)$1	293	42	49	17.4925
GCCCUGC	chr16:90071687-90071955(-)$1	268	141	148	17.4925
GUCCUGC	chr1:32095937-32096196(-)$1	259	132	139	13.7611
GCCCUGC	chr16:31501534-31501800(-)$1	266	186	193	17.4925
GCCCUGG	chr19:33790892-33791185(-)$1	293	185	192	13.5373
GCCCUGC	chr1:182352886-182353139(-)$1	253	145	152	17.4925
GCCCUUC	chr1:183521594-183521853(+)$1	259	168	175	13.6119
GCCCUGC	chr17:75495526-75495805(+)$1	279	176	183	17.4925
GCCCUCC	chr4:981640-981924(-)$1	284	121	128	13.5373
gccCUGU	chr10:72637726-72637972(+)$1	246	152	159	13.2388
GCCCUGC	chr6:30655819-30656126(-)$1	307	172	179	17.4925
GCCCUGC	chr3:47894179-47894447(-)$1	268	247	254	17.4925
GCCCUGC	chr19:36640646-36640939(+)$1	293	268	275	17.4925
GCCCUGC	chr16:70191912-70192173(+)$1	261	158	165	17.4925
GCCCUGC	chr16:570865-571244(+)$1	379	352	359	17.4925
GCCCUUC	chr20:33891034-33891302(-)$1	268	51	58	13.6119
GACCUGC	chr19:2755593-2755867(-)$1	274	46	53	13.6119
GCCCAGC	chr1:9789906-9790168(-)$1	262	241	248	13.2388
GCCCUGC	chr12:49414965-49415230(-)$1	265	33	40	17.4925
GUCCUGC	chr6:3723574-3723941(-)$1	367	234	241	13.7611
GCCCAGC	chr7:151074565-151074885(+)$1	320	125	132	13.2388
GCCCUGC	chr17:41167718-41167975(-)$1	257	104	111	17.4925
GCCCUGG	chr16:66978582-66978864(+)$1	282	227	234	13.5373
GCCCUCC	chr22:24811611-24811862(+)$1	251	48	55	13.5373
GCCCUUC	chr1:183521451-183521776(+)$1	325	311	318	13.6119
UCCCUGC	chr9:137023880-137024229(+)$1	349	318	325	13.9104
GCCCUGC	chr7:73246157-73246473(+)$1	316	83	90	17.4925
GCCCUCC	chr17:76168013-76168285(+)$1	272	37	44	13.5373
GCCCUGG	chr17:79862582-79862793(-)$1	211	95	102	13.5373
UCCCUGC	chr11:869451-869736(-)$1	285	42	49	13.9104
GACCUGC	chr6:132269991-132270229(-)$1	238	205	212	13.6119
GUCCUGC	chr11:47186598-47186926(-)$1	328	147	154	13.7611
ACCCUGC	chr16:2303473-2303731(-)$1	258	69	76	13.5373
GCCCAGC	chr1:154179700-154179979(-)$1	279	139	146	13.2388

#otherMatches

#Struct PSSM
eeeeebb	chr22:45736598-45736852(+)$1	254	242	249	13.2388
fflllff	chr1:227919586-227919840(-)$1	254	13	20	17.4925
g>>>>>>	chrX:128939520-128939772(-)$1	252	180	187	13.6119
AKKBB{D	chr20:3847222-3847548(+)$1	326	15	22	13.6119
eee22cc	chr19:47712526-47712798(+)$1	272	223	230	13.3880
EE{EEEE	chr7:5347569-5347854(-)$1	285	127	134	17.4925
{DDDDee	chr17:72443067-72443392(+)$1	325	139	146	13.3880
ee]bb]c	chr17:42270735-42271011(-)$1	276	136	143	13.6119
ee::::F	chr12:131623993-131624269(+)$1	276	19	26	13.5373
]dddd44	chr22:18074924-18075342(-)$1	418	239	246	17.4925
ccceeee	chr11:770605-770866(-)$1	261	68	75	13.5373
ff!!iii	chr16:54146221-54146500(+)$1	279	114	121	13.5373
gggggg]	chr21:46933228-46933473(+)$1	245	146	153	17.4925
bbaccc2	chr12:50157759-50158025(+)$1	266	156	163	13.9104
22dddde	chr19:15359218-15359473(-)$1	255	167	174	13.6119
ffeeeee	chr1:65898584-65898878(+)$1	294	175	182	13.6119
d]dddd]	chr3:48556491-48556748(-)$1	257	44	51	13.3880
FFFFFFF	chr9:124544781-124545046(+)$1	265	122	129	13.9104
ooooooi	chr16:85009110-85009348(-)$1	238	140	147	13.7611
4444===	chr17:79879807-79880072(-)$1	265	248	255	17.4925
wwwwwww	chr19:5151595-5151837(+)$1	242	215	222	13.3134
ee22ccc	chr17:21218100-21218420(+)$1	320	32	39	13.7611
ff333bb	chr19:6414710-6414973(-)$1	263	35	42	13.9104
JJJhhhh	chr9:136229433-136229642(-)$1	209	76	83	13.5373
BNNNNNI	chr6:36891505-36891754(+)$1	249	6	13	13.6119
hgggggg	chr9:136335019-136335295(+)$1	276	117	124	17.4925
ggggg::	chr14:23778278-23778524(+)$1	246	208	215	13.3880
ddd:GGG	chr1:6694828-6695075(-)$1	247	53	60	17.4925
eeeeeee	chr17:40851198-40851504(+)$1	306	181	188	13.6119
bblllbb	chr9:137328596-137328838(+)$1	242	108	115	13.2388
FFFFF{C	chr16:29869965-29870218(-)$1	253	150	157	13.7611
cccffff	chr17:40126521-40126839(+)$1	318	129	136	13.9104
$$$$$bb	chr17:79525695-79525991(-)$1	296	96	103	13.9104
b]eeeee	chr17:74676506-74676799(-)$1	293	42	49	17.4925
tttttcc	chr16:90071687-90071955(-)$1	268	141	148	17.4925
cc22ggg	chr1:32095937-32096196(-)$1	259	132	139	13.7611
!!ggggg	chr16:31501534-31501800(-)$1	266	186	193	17.4925
eee22cc	chr19:33790892-33791185(-)$1	293	185	192	13.5373
ccc333d	chr1:182352886-182353139(-)$1	253	145	152	17.4925
ddd[eee	chr1:183521594-183521853(+)$1	259	168	175	13.6119
c]bb]hh	chr17:75495526-75495805(+)$1	279	176	183	17.4925
3eeeee]	chr4:981640-981924(-)$1	284	121	128	13.5373
::dddd[	chr10:72637726-72637972(+)$1	246	152	159	13.2388
ddd::GG	chr6:30655819-30656126(-)$1	307	172	179	17.4925
qqqgggg	chr3:47894179-47894447(-)$1	268	247	254	17.4925
eeeeecc	chr19:36640646-36640939(+)$1	293	268	275	17.4925
gglllgg	chr16:70191912-70192173(+)$1	261	158	165	17.4925
??GGGGG	chr16:570865-571244(+)$1	379	352	359	17.4925
ffffff!	chr20:33891034-33891302(-)$1	268	51	58	13.6119
cc!!a[c	chr19:2755593-2755867(-)$1	274	46	53	13.6119
CCZZZEE	chr1:9789906-9790168(-)$1	262	241	248	13.2388
dddd]ee	chr12:49414965-49415230(-)$1	265	33	40	17.4925
cc]ccc2	chr6:3723574-3723941(-)$1	367	234	241	13.7611
ccceeee	chr7:151074565-151074885(+)$1	320	125	132	13.2388
cclllcc	chr17:41167718-41167975(-)$1	257	104	111	17.4925
d####cc	chr16:66978582-66978864(+)$1	282	227	234	13.5373
hhhhhhb	chr22:24811611-24811862(+)$1	251	48	55	13.5373
mdddd]a	chr1:183521451-183521776(+)$1	325	311	318	13.6119
E}BB}BB	chr9:137023880-137024229(+)$1	349	318	325	13.9104
eeeeooo	chr7:73246157-73246473(+)$1	316	83	90	17.4925
cmmmmcc	chr17:76168013-76168285(+)$1	272	37	44	13.5373
::CCC{I	chr17:79862582-79862793(-)$1	211	95	102	13.5373
ff]aeee	chr11:869451-869736(-)$1	285	42	49	13.9104
HHHHHYY	chr6:132269991-132270229(-)$1	238	205	212	13.6119
G{CCCFF	chr11:47186598-47186926(-)$1	328	147	154	13.7611
qqqqqcc	chr16:2303473-2303731(-)$1	258	69	76	13.5373
ffff]ff	chr1:154179700-154179979(-)$1	279	139	146	13.2388

#DB
)))))))	chr22:45736598-45736852(+)$1	1	242	249	13.2388
((...))	chr1:227919586-227919840(-)$1	1	13	20	17.4925
)......	chrX:128939520-128939772(-)$1	1	180	187	13.6119
(..((.(	chr20:3847222-3847548(+)$1	1	15	22	13.6119
)))..))	chr19:47712526-47712798(+)$1	1	223	230	13.3880
((.((((	chr7:5347569-5347854(-)$1	1	127	134	17.4925
.((((((	chr17:72443067-72443392(+)$1	1	139	146	13.3880
)).)).)	chr17:42270735-42271011(-)$1	1	136	143	13.6119
))....(	chr12:131623993-131624269(+)$1	1	19	26	13.5373
.))))..	chr22:18074924-18075342(-)$1	1	239	246	17.4925
)))))))	chr11:770605-770866(-)$1	1	68	75	13.5373
((..(((	chr16:54146221-54146500(+)$1	1	114	121	13.5373
)))))).	chr21:46933228-46933473(+)$1	1	146	153	17.4925
)))))).	chr12:50157759-50158025(+)$1	1	156	163	13.9104
..)))))	chr19:15359218-15359473(-)$1	1	167	174	13.6119
))(((((	chr1:65898584-65898878(+)$1	1	175	182	13.6119
).)))).	chr3:48556491-48556748(-)$1	1	44	51	13.3880
))(((((	chr9:124544781-124545046(+)$1	1	122	129	13.9104
......)	chr16:85009110-85009348(-)$1	1	140	147	13.7611
....)))	chr17:79879807-79880072(-)$1	1	248	255	17.4925
.......	chr19:5151595-5151837(+)$1	1	215	222	13.3134
))..)))	chr17:21218100-21218420(+)$1	1	32	39	13.7611
))...))	chr19:6414710-6414973(-)$1	1	35	42	13.9104
)))((((	chr9:136229433-136229642(-)$1	1	76	83	13.5373
(.....(	chr6:36891505-36891754(+)$1	1	6	13	13.6119
)((((((	chr9:136335019-136335295(+)$1	1	117	124	17.4925
)))))..	chr14:23778278-23778524(+)$1	1	208	215	13.3880
))).(((	chr1:6694828-6695075(-)$1	1	53	60	17.4925
)))))))	chr17:40851198-40851504(+)$1	1	181	188	13.6119
((...))	chr9:137328596-137328838(+)$1	1	108	115	13.2388
(((((.(	chr16:29869965-29870218(-)$1	1	150	157	13.7611
)))))))	chr17:40126521-40126839(+)$1	1	129	136	13.9104
.....((	chr17:79525695-79525991(-)$1	1	96	103	13.9104
).)))))	chr17:74676506-74676799(-)$1	1	42	49	17.4925
.....))	chr16:90071687-90071955(-)$1	1	141	148	17.4925
))..)))	chr1:32095937-32096196(-)$1	1	132	139	13.7611
..(((((	chr16:31501534-31501800(-)$1	1	186	193	17.4925
)))..))	chr19:33790892-33791185(-)$1	1	185	192	13.5373
)))...)	chr1:182352886-182353139(-)$1	1	145	152	17.4925
(((.(((	chr1:183521594-183521853(+)$1	1	168	175	13.6119
).)).))	chr17:75495526-75495805(+)$1	1	176	183	17.4925
.))))).	chr4:981640-981924(-)$1	1	121	128	13.5373
..((((.	chr10:72637726-72637972(+)$1	1	152	159	13.2388
)))..))	chr6:30655819-30656126(-)$1	1	172	179	17.4925
...))))	chr3:47894179-47894447(-)$1	1	247	254	17.4925
)))))((	chr19:36640646-36640939(+)$1	1	268	275	17.4925
((...))	chr16:70191912-70192173(+)$1	1	158	165	17.4925
..)))))	chr16:570865-571244(+)$1	1	352	359	17.4925
((((((.	chr20:33891034-33891302(-)$1	1	51	58	13.6119
((..(.(	chr19:2755593-2755867(-)$1	1	46	53	13.6119
))...))	chr1:9789906-9790168(-)$1	1	241	248	13.2388
)))).))	chr12:49414965-49415230(-)$1	1	33	40	17.4925
)).))).	chr6:3723574-3723941(-)$1	1	234	241	13.7611
)))))))	chr7:151074565-151074885(+)$1	1	125	132	13.2388
((...))	chr17:41167718-41167975(-)$1	1	104	111	17.4925
(....((	chr16:66978582-66978864(+)$1	1	227	234	13.5373
)))))))	chr22:24811611-24811862(+)$1	1	48	55	13.5373
.)))).)	chr1:183521451-183521776(+)$1	1	311	318	13.6119
).)).))	chr9:137023880-137024229(+)$1	1	318	325	13.9104
((((...	chr7:73246157-73246473(+)$1	1	83	90	17.4925
(....))	chr17:76168013-76168285(+)$1	1	37	44	13.5373
..(((.(	chr17:79862582-79862793(-)$1	1	95	102	13.5373
)).))))	chr11:869451-869736(-)$1	1	42	49	13.9104
)))))..	chr6:132269991-132270229(-)$1	1	205	212	13.6119
(.(((((	chr11:47186598-47186926(-)$1	1	147	154	13.7611
.....))	chr16:2303473-2303731(-)$1	1	69	76	13.5373
)))).))	chr1:154179700-154179979(-)$1	1	139	146	13.2388

#PSSM
G : 0.77	U : 0.10	g : 0.04	C : 0.04	A : 0.02	
C : 0.79	U : 0.08	A : 0.05	c : 0.04	G : 0.01	
C : 0.95	c : 0.04	
C : 0.97	c : 0.02	
U : 0.91	A : 0.05	a : 0.01	u : 0.01	
G : 0.82	U : 0.07	C : 0.05	g : 0.02	A : 0.01	
C : 0.85	G : 0.05	A : 0.04	c : 0.01	g : 0.01	U : 0.01	

#score	988.3432835820909
#seq	67
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_UTR_m1_run2.nuc.txt

#NT
UUUUCUA	chr16:56643140-56643397(+)$1	257	223	230	13.0149
UUUUCUU	chr11:5269422-5269694(-)$1	272	199	206	17.1940
UUUUUUU	chr12:49521468-49521707(-)$1	239	158	165	14.1343
UUCUCUU	chr20:60962839-60963064(+)$1	225	47	54	12.7164
UUGUCUU	chr12:49666951-49667206(+)$1	255	85	92	12.7910
UUGUCUU	chr12:49666910-49667151(+)$1	241	126	133	12.7910
UUUUCUU	chr7:56169257-56169498(-)$1	241	222	229	17.1940
UUUUCUC	chr15:44063538-44063789(+)$1	251	18	25	12.9402
CUUUCUU	chr4:39460416-39460631(-)$1	215	96	103	12.8656
UUUUCUG	chr12:57031882-57032118(-)$1	236	68	75	13.0149
UUUCCUU	chr7:75695605-75695855(+)$1	250	144	151	13.0895
UUUUCUU	chr11:5289504-5289750(-)$1	246	156	163	17.1940
UUUCCUU	chr12:56119179-56119458(-)$1	279	37	44	13.0895
UUUACUU	chr12:120878385-120878626(+)$1	241	60	67	13.0895
UUUUAUU	chr15:44086058-44086290(+)$1	232	135	142	13.7611
UUUUCUU	chr2:47387818-47388044(-)$1	226	181	188	17.1940
UUUGCUU	chr20:60711718-60711970(-)$1	252	71	78	13.0895
UUUUAUU	chr8:56986205-56986427(-)$1	222	85	92	13.7611
UUUUCUU	chr19:41271054-41271352(+)$1	298	256	263	17.1940
UUUUUUU	chr12:56510331-56510544(+)$1	213	103	110	14.1343
UUUACUU	chr12:120878374-120878585(+)$1	211	71	78	13.0895
CUUUCUU	chr3:101405414-101405657(-)$1	243	95	102	12.8656
UUUUAUU	chr1:53692529-53692798(-)$1	269	4	11	13.7611
GUUUCUU	chr20:2442301-2442542(-)$1	241	48	55	12.6417
UUUGCUU	chr19:40953615-40953895(-)$1	280	272	279	13.0895
UUUUCUU	chr6:170844135-170844411(-)$1	276	267	274	17.1940
UUUUCUG	chr3:197676964-197677188(+)$1	224	10	17	13.0149
UUUUUUU	chr19:50437002-50437268(+)$1	266	142	149	14.1343
UUUUCUA	chr16:56643216-56643470(+)$1	254	147	154	13.0149
UUUACUU	chr4:39459950-39460160(-)$1	210	165	172	13.0895
UUUUCCU	chr11:8707229-8707476(+)$1	247	161	168	13.1641
UUUUUUU	chr14:103985960-103986256(-)$1	296	196	203	14.1343
UUUUCUU	chr11:5289550-5289799(-)$1	249	205	212	17.1940
UUUGCUU	chr19:54704628-54704839(+)$1	211	119	126	13.0895
UUUUCGU	chrX:153626632-153626836(+)$1	204	193	200	12.7910
UUUUCUU	chr15:66795761-66795968(-)$1	207	91	98	17.1940
UUUUCUC	chr5:180670753-180671002(-)$1	249	88	95	12.9402
UUCUCUU	chr15:72491922-72492163(-)$1	241	52	59	12.7164
UUUUCCU	chr7:158424051-158424344(-)$1	293	51	58	13.1641
CUUUCUU	chr11:62341202-62341430(-)$1	228	97	104	12.8656
UUUUCUU	chr18:19209003-19209278(+)$1	275	3	10	17.1940
UUUUUUU	chr4:48862998-48863276(+)$1	278	199	206	14.1343
UUUCCUU	chr7:75695728-75696006(+)$1	278	21	28	13.0895
UUUUCUU	chr15:66795734-66795961(-)$1	227	84	91	17.1940
UUUUCCU	chr12:54058874-54059141(-)$1	267	100	107	13.1641
UUUUCUU	chr4:56461337-56461565(-)$1	228	46	53	17.1940
UUUUCUU	chr7:54819929-54820189(-)$1	260	59	66	17.1940
UUUUCUA	chr8:23429820-23430072(+)$1	252	2	9	13.0149
UUUUUUU	chr19:46190663-46190958(-)$1	295	231	238	14.1343
UUUUUUU	chr11:62392275-62392520(-)$1	245	143	150	14.1343
UUUUCCU	chrX:119010466-119010686(+)$1	220	38	45	13.1641
UUUUCUU	chr19:58898591-58898809(+)$1	218	4	11	17.1940
UUUUCUU	chr11:9466843-9467089(+)$1	246	124	131	17.1940
UUUUAUU	chr6:8079828-8080068(-)$1	240	95	102	13.7611
UUUUCUG	chr4:110745470-110745698(+)$1	228	64	71	13.0149
UGUUCUU	chr7:123182020-123182262(-)$1	242	157	164	12.3432
UUUUGUU	chr1:116947129-116947436(+)$1	307	174	181	13.4626
UUUUCUU	chr1:8921264-8921549(-)$1	285	17	24	17.1940
UUUUCUU	chr12:53693007-53693327(+)$1	320	235	242	17.1940
CUUUCUU	chr8:56986929-56987161(-)$1	232	92	99	12.8656
UUUUCCU	chr5:53180023-53180293(-)$1	270	133	140	13.1641
UUUUUUU	chr11:18428636-18428884(+)$1	248	1	8	14.1343
UUUUUUU	chr19:17513668-17513927(-)$1	259	96	103	14.1343
UUUUAUU	chr15:78841193-78841430(+)$1	237	102	109	13.7611
UUUUCCU	chrX:118920375-118920621(-)$1	246	79	86	13.1641
UUGUCUU	chr11:5274406-5274688(-)$1	282	274	281	12.7910

#otherMatches

#Struct PSSM
:::::::	chr14:50050237-50050494(-)$1	257	32	39	14.1343
rrrrrrr	chr16:56643140-56643397(+)$1	257	223	230	13.0149
gggg22e	chr11:5269422-5269694(-)$1	272	199	206	17.1940
FFF::::	chr12:49521468-49521707(-)$1	239	158	165	14.1343
!!a[bbm	chr20:60962839-60963064(+)$1	225	47	54	12.7164
ggggggg	chr12:49666951-49667206(+)$1	255	85	92	12.7910
ggggggg	chr12:49666910-49667151(+)$1	241	126	133	12.7910
=::::::	chr7:56169257-56169498(-)$1	241	222	229	17.1940
JJJJJJJ	chr15:44063538-44063789(+)$1	251	18	25	12.9402
ggg[fff	chr4:39460416-39460631(-)$1	215	96	103	12.8656
eeee22b	chr12:57031882-57032118(-)$1	236	68	75	13.0149
ccc6666	chr7:75695605-75695855(+)$1	250	144	151	13.0895
ffffffc	chr11:5289504-5289750(-)$1	246	156	163	17.1940
$$$cccl	chr12:56119179-56119458(-)$1	279	37	44	13.0895
edddd!!	chr12:120878385-120878626(+)$1	241	60	67	13.0895
fffff""	chr15:44086058-44086290(+)$1	232	135	142	13.7611
444bb]i	chr2:47387818-47388044(-)$1	226	181	188	17.1940
$$$gggg	chr20:60711718-60711970(-)$1	252	71	78	13.0895
ffff[cc	chr8:56986205-56986427(-)$1	222	85	92	13.7611
::::::D	chr19:41271054-41271352(+)$1	298	256	263	17.1940
:::::::	chr12:56510331-56510544(+)$1	213	103	110	14.1343
edddd!!	chr12:120878374-120878585(+)$1	211	71	78	13.0895
BYYAEEE	chr3:101405414-101405657(-)$1	243	95	102	12.8656
:::::::	chr1:53692529-53692798(-)$1	269	4	11	13.7611
^^^^^^^	chr20:2442301-2442542(-)$1	241	48	55	12.6417
:::::::	chr19:40953615-40953895(-)$1	280	272	279	13.0895
ffffddd	chr6:170844135-170844411(-)$1	276	267	274	17.1940
&&&&&&g	chr3:197676964-197677188(+)$1	224	10	17	13.0149
=======	chr19:50437002-50437268(+)$1	266	142	149	14.1343
rrrrrrr	chr16:56643216-56643470(+)$1	254	147	154	13.0149
e]dddd4	chr4:39459950-39460160(-)$1	210	165	172	13.0895
iiiiii]	chr11:8707229-8707476(+)$1	247	161	168	13.1641
====%%%	chr14:103985960-103986256(-)$1	296	196	203	14.1343
ffffffc	chr11:5289550-5289799(-)$1	249	205	212	17.1940
]eeeee]	chr19:54704628-54704839(+)$1	211	119	126	13.0895
:::::::	chrX:153626632-153626836(+)$1	204	193	200	12.7910
qqqqqqq	chr15:66795761-66795968(-)$1	207	91	98	17.1940
BB{CCCC	chr5:180670753-180671002(-)$1	249	88	95	12.9402
iiii"""	chr15:72491922-72492163(-)$1	241	52	59	12.7164
ggggggg	chr7:158424051-158424344(-)$1	293	51	58	13.1641
apppppp	chr11:62341202-62341430(-)$1	228	97	104	12.8656
=======	chr18:19209003-19209278(+)$1	275	3	10	17.1940
dd]iiii	chr4:48862998-48863276(+)$1	278	199	206	14.1343
"""dddd	chr7:75695728-75696006(+)$1	278	21	28	13.0895
:::::::	chr15:66795734-66795961(-)$1	227	84	91	17.1940
sssssse	chr12:54058874-54059141(-)$1	267	100	107	13.1641
i]dddd:	chr4:56461337-56461565(-)$1	228	46	53	17.1940
::::===	chr7:54819929-54820189(-)$1	260	59	66	17.1940
:::::::	chr8:23429820-23430072(+)$1	252	2	9	13.0149
ggggg22	chr19:46190663-46190958(-)$1	295	231	238	14.1343
======2	chr11:62392275-62392520(-)$1	245	143	150	14.1343
nneeeee	chrX:119010466-119010686(+)$1	220	38	45	13.1641
mmmmddd	chr19:58898591-58898809(+)$1	218	4	11	17.1940
=======	chr11:9466843-9467089(+)$1	246	124	131	17.1940
deeeee2	chr6:8079828-8080068(-)$1	240	95	102	13.7611
::::ddd	chr4:110745470-110745698(+)$1	228	64	71	13.0149
::ddddg	chr7:123182020-123182262(-)$1	242	157	164	12.3432
ggggggg	chr1:116947129-116947436(+)$1	307	174	181	13.4626
iiiiiii	chr1:8921264-8921549(-)$1	285	17	24	17.1940
]ccc]dd	chr12:53693007-53693327(+)$1	320	235	242	17.1940
ggggggg	chr8:56986929-56987161(-)$1	232	92	99	12.8656
hhhhhhh	chr5:53180023-53180293(-)$1	270	133	140	13.1641
:::::::	chr11:18428636-18428884(+)$1	248	1	8	14.1343
f::::::	chr19:17513668-17513927(-)$1	259	96	103	14.1343
iiiiiii	chr15:78841193-78841430(+)$1	237	102	109	13.7611
===####	chrX:118920375-118920621(-)$1	246	79	86	13.1641
F::::::	chr11:5274406-5274688(-)$1	282	274	281	12.7910

#DB
.......	chr14:50050237-50050494(-)$1	1	32	39	14.1343
.......	chr16:56643140-56643397(+)$1	1	223	230	13.0149
))))..)	chr11:5269422-5269694(-)$1	1	199	206	17.1940
)))....	chr12:49521468-49521707(-)$1	1	158	165	14.1343
..(.((.	chr20:60962839-60963064(+)$1	1	47	54	12.7164
)))))))	chr12:49666951-49667206(+)$1	1	85	92	12.7910
)))))))	chr12:49666910-49667151(+)$1	1	126	133	12.7910
)......	chr7:56169257-56169498(-)$1	1	222	229	17.1940
(((((((	chr15:44063538-44063789(+)$1	1	18	25	12.9402
(((.(((	chr4:39460416-39460631(-)$1	1	96	103	12.8656
))))..)	chr12:57031882-57032118(-)$1	1	68	75	13.0149
)))....	chr7:75695605-75695855(+)$1	1	144	151	13.0895
)))))))	chr11:5289504-5289750(-)$1	1	156	163	17.1940
...(((.	chr12:56119179-56119458(-)$1	1	37	44	13.0895
(((((..	chr12:120878385-120878626(+)$1	1	60	67	13.0895
(((((..	chr15:44086058-44086290(+)$1	1	135	142	13.7611
...)).)	chr2:47387818-47388044(-)$1	1	181	188	17.1940
...((((	chr20:60711718-60711970(-)$1	1	71	78	13.0895
((((.((	chr8:56986205-56986427(-)$1	1	85	92	13.7611
......)	chr19:41271054-41271352(+)$1	1	256	263	17.1940
.......	chr12:56510331-56510544(+)$1	1	103	110	14.1343
(((((..	chr12:120878374-120878585(+)$1	1	71	78	13.0895
)..))))	chr3:101405414-101405657(-)$1	1	95	102	12.8656
.......	chr1:53692529-53692798(-)$1	1	4	11	13.7611
.......	chr20:2442301-2442542(-)$1	1	48	55	12.6417
.......	chr19:40953615-40953895(-)$1	1	272	279	13.0895
)))))))	chr6:170844135-170844411(-)$1	1	267	274	17.1940
......(	chr3:197676964-197677188(+)$1	1	10	17	13.0149
)))))))	chr19:50437002-50437268(+)$1	1	142	149	14.1343
.......	chr16:56643216-56643470(+)$1	1	147	154	13.0149
).)))).	chr4:39459950-39460160(-)$1	1	165	172	13.0895
)))))).	chr11:8707229-8707476(+)$1	1	161	168	13.1641
((((...	chr14:103985960-103986256(-)$1	1	196	203	14.1343
)))))))	chr11:5289550-5289799(-)$1	1	205	212	17.1940
.))))).	chr19:54704628-54704839(+)$1	1	119	126	13.0895
.......	chrX:153626632-153626836(+)$1	1	193	200	12.7910
.......	chr15:66795761-66795968(-)$1	1	91	98	17.1940
((.((((	chr5:180670753-180671002(-)$1	1	88	95	12.9402
((((...	chr15:72491922-72492163(-)$1	1	52	59	12.7164
)))))))	chr7:158424051-158424344(-)$1	1	51	58	13.1641
(......	chr11:62341202-62341430(-)$1	1	97	104	12.8656
(((((((	chr18:19209003-19209278(+)$1	1	3	10	17.1940
)).))))	chr4:48862998-48863276(+)$1	1	199	206	14.1343
...((((	chr7:75695728-75696006(+)$1	1	21	28	13.0895
.......	chr15:66795734-66795961(-)$1	1	84	91	17.1940
......)	chr12:54058874-54059141(-)$1	1	100	107	13.1641
).)))).	chr4:56461337-56461565(-)$1	1	46	53	17.1940
....(((	chr7:54819929-54820189(-)$1	1	59	66	17.1940
.......	chr8:23429820-23430072(+)$1	1	2	9	13.0149
)))))..	chr19:46190663-46190958(-)$1	1	231	238	14.1343
)))))).	chr11:62392275-62392520(-)$1	1	143	150	14.1343
..)))))	chrX:119010466-119010686(+)$1	1	38	45	13.1641
....)))	chr19:58898591-58898809(+)$1	1	4	11	17.1940
(((((((	chr11:9466843-9467089(+)$1	1	124	131	17.1940
)))))).	chr6:8079828-8080068(-)$1	1	95	102	13.7611
....(((	chr4:110745470-110745698(+)$1	1	64	71	13.0149
..(((((	chr7:123182020-123182262(-)$1	1	157	164	12.3432
)))((((	chr1:116947129-116947436(+)$1	1	174	181	13.4626
(((((((	chr1:8921264-8921549(-)$1	1	17	24	17.1940
.))).))	chr12:53693007-53693327(+)$1	1	235	242	17.1940
(((((((	chr8:56986929-56987161(-)$1	1	92	99	12.8656
(((((((	chr5:53180023-53180293(-)$1	1	133	140	13.1641
.......	chr11:18428636-18428884(+)$1	1	1	8	14.1343
)......	chr19:17513668-17513927(-)$1	1	96	103	14.1343
)))))))	chr15:78841193-78841430(+)$1	1	102	109	13.7611
(((....	chrX:118920375-118920621(-)$1	1	79	86	13.1641
)......	chr11:5274406-5274688(-)$1	1	274	281	12.7910

#PSSM
U : 0.92	C : 0.05	G : 0.01	
U : 0.98	G : 0.01	
U : 0.92	G : 0.04	C : 0.02	
U : 0.86	C : 0.04	A : 0.04	G : 0.04	
C : 0.76	U : 0.14	A : 0.07	G : 0.01	
U : 0.89	C : 0.08	G : 0.01	
U : 0.88	A : 0.04	G : 0.04	C : 0.02	

#score	952.5223880597025
#seq	67
#width	7
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_transcript_m3_run2.nuc.txt

#NT
UUUG	chr14:39650061-39650320(+)$1	259	142	146	11.9999
UUUG	chr5:43295586-43295879(-)$1	293	21	25	11.9999
uuug	chr19:1883805-1884093(-)$1	288	117	121	11.9999
UUUG	chr1:161088100-161088509(+)$1	409	30	34	11.9999
uuug	chr3:119177895-119178177(-)$1	282	13	17	11.9999
UUUG	chr1:155945052-155945330(-)$1	278	209	213	11.9999
UUUG	chr8:109260496-109260799(-)$1	303	68	72	11.9999
uuug	chr21:15886390-15886706(-)$1	316	223	227	11.9999
UUUG	chr1:35656533-35656810(-)$1	277	178	182	11.9999
UUUG	chr3:9432227-9432493(-)$1	266	96	100	11.9999
uuug	chr22:19392393-19392649(-)$1	256	129	133	11.9999
UUUG	chr6:31596070-31596340(+)$1	270	51	55	11.9999
UUUG	chr21:35476760-35477070(+)$1	310	20	24	11.9999
UUUG	chr3:196082532-196082837(-)$1	305	96	100	11.9999
UUUG	chr3:151994315-151994648(+)$1	333	14	18	11.9999
UUUG	chr20:5526311-5526586(-)$1	275	32	36	11.9999
uuug	chr5:10355106-10355381(+)$1	275	135	139	11.9999
UUUG	chr3:195776328-195776617(-)$1	289	91	95	11.9999
UUUG	chr13:111557067-111557325(-)$1	258	96	100	11.9999
UUUG	chr6:26124997-26125299(+)$1	302	32	36	11.9999
UUUG	chr19:55609276-55609582(-)$1	306	166	170	11.9999
UUUG	chr16:57218388-57218677(-)$1	289	221	225	11.9999
uuug	chr21:36249388-36249685(-)$1	297	267	271	11.9999
UUUG	chr1:35646200-35646448(-)$1	248	205	209	11.9999
UUUG	chr17:30800933-30801222(+)$1	289	83	87	11.9999
UUUG	chr2:96934643-96934931(+)$1	288	76	80	11.9999
UUUG	chr17:34151283-34151554(+)$1	271	253	257	11.9999
UUUG	chr11:65192492-65192731(+)$1	239	41	45	11.9999
UUUG	chr2:173447023-173447310(+)$1	287	191	195	11.9999
UUUG	chr17:45024333-45024645(+)$1	312	89	93	11.9999
uuug	chr22:19389278-19389529(-)$1	251	62	66	11.9999
UUUG	chr3:6550883-6551140(+)$1	257	128	132	11.9999
UUUG	chr6:35386854-35387210(+)$1	356	62	66	11.9999
UUUG	chr10:126784860-126785170(-)$1	310	12	16	11.9999
UUUG	chr11:65193113-65193327(+)$1	214	3	7	11.9999
uuug	chr18:9926379-9926648(+)$1	269	96	100	11.9999
UUUG	chr22:17086391-17086652(+)$1	261	179	183	11.9999
UUUG	chr9:37219999-37220304(+)$1	305	33	37	11.9999
UUUG	chr11:2702697-2702949(-)$1	252	214	218	11.9999
UUUG	chr11:75114079-75114321(+)$1	242	8	12	11.9999
uuug	chr21:39429454-39429761(-)$1	307	134	138	11.9999
uuug	chr22:22122454-22122731(-)$1	277	220	224	11.9999
uuug	chr19:5716379-5716611(-)$1	232	170	174	11.9999
UUUG	chr3:187458263-187458538(-)$1	275	34	38	11.9999
UUUG	chr19:29020064-29020379(-)$1	315	12	16	11.9999
uuug	chr6:87939648-87939948(+)$1	300	25	29	11.9999
uuug	chr7:105180037-105180355(+)$1	318	127	131	11.9999
UUUG	chr10:62545625-62545966(+)$1	341	185	189	11.9999
UUUG	chr5:53388407-53388653(-)$1	246	10	14	11.9999
UUUG	chr17:80437608-80437867(+)$1	259	7	11	11.9999
uuug	chr7:158725537-158725799(+)$1	262	215	219	11.9999
UUUG	chr16:67205403-67205692(+)$1	289	51	55	11.9999
UUUG	chr11:65193098-65193313(+)$1	215	18	22	11.9999
UUUG	chr4:56872-57130(+)$1	258	62	66	11.9999
uuug	chr7:158532643-158532914(-)$1	271	178	182	11.9999
UUUG	chr4:139098434-139098748(-)$1	314	272	276	11.9999
UUUG	chr1:21102764-21103035(-)$1	271	47	51	11.9999
UUUG	chr3:195786146-195786435(-)$1	289	102	106	11.9999
UUUG	chr3:48754005-48754258(-)$1	253	66	70	11.9999
uuug	chr10:35739032-35739302(+)$1	270	72	76	11.9999
UUUG	chr6:36487064-36487336(-)$1	272	241	245	11.9999
uuug	chr4:79791535-79791835(+)$1	300	0	4	11.9999
UUUG	chr20:34312412-34312680(-)$1	268	6	10	11.9999
UUUG	chr4:56283598-56283904(+)$1	306	153	157	11.9999
uuug	chr20:57563152-57563480(+)$1	328	20	24	11.9999
uuug	chr16:20696155-20696386(+)$1	231	18	22	11.9999
UUUG	chr3:43750633-43750894(+)$1	261	196	200	11.9999
UUUG	chr8:37754754-37755066(-)$1	312	100	104	11.9999
UUUG	chr11:10828898-10829159(-)$1	261	33	37	11.9999
UUUG	chr13:111557585-111557868(-)$1	283	130	134	11.9999
uuug	chr1:16653347-16653627(-)$1	280	183	187	11.9999
UUUG	chr17:30701866-30702120(+)$1	254	52	56	11.9999
UUUG	chr1:29390862-29391146(+)$1	284	144	148	11.9999
uuug	chr7:155507012-155507274(+)$1	262	42	46	11.9999
UUUG	chrX:70761332-70761607(+)$1	275	237	241	11.9999
UUUG	chr11:14669474-14669764(+)$1	290	10	14	11.9999
UUUG	chr1:35648245-35648532(-)$1	287	57	61	11.9999
uuug	chr14:102299201-102299471(+)$1	270	65	69	11.9999
uuug	chr6:27096474-27096779(-)$1	305	75	79	11.9999

#otherMatches

#Struct PSSM
====	chr12:121772370-121772679(-)$1	309	50	54	11.9999
eeee	chr14:39650061-39650320(+)$1	259	142	146	11.9999
mmmm	chr5:43295586-43295879(-)$1	293	21	25	11.9999
::::	chr19:1883805-1884093(-)$1	288	117	121	11.9999
d!!f	chr1:161088100-161088509(+)$1	409	30	34	11.9999
ffff	chr3:119177895-119178177(-)$1	282	13	17	11.9999
hhh:	chr1:155945052-155945330(-)$1	278	209	213	11.9999
bddd	chr8:109260496-109260799(-)$1	303	68	72	11.9999
====	chr21:15886390-15886706(-)$1	316	223	227	11.9999
:::d	chr1:35656533-35656810(-)$1	277	178	182	11.9999
ee44	chr3:9432227-9432493(-)$1	266	96	100	11.9999
ggg:	chr22:19392393-19392649(-)$1	256	129	133	11.9999
eeee	chr6:31596070-31596340(+)$1	270	51	55	11.9999
ccc]	chr21:35476760-35477070(+)$1	310	20	24	11.9999
pppb	chr3:196082532-196082837(-)$1	305	96	100	11.9999
DDDD	chr3:151994315-151994648(+)$1	333	14	18	11.9999
"ddd	chr20:5526311-5526586(-)$1	275	32	36	11.9999
c444	chr5:10355106-10355381(+)$1	275	135	139	11.9999
44cc	chr3:195776328-195776617(-)$1	289	91	95	11.9999
rrrf	chr13:111557067-111557325(-)$1	258	96	100	11.9999
:::D	chr6:26124997-26125299(+)$1	302	32	36	11.9999
dd%%	chr19:55609276-55609582(-)$1	306	166	170	11.9999
'''g	chr16:57218388-57218677(-)$1	289	221	225	11.9999
mfff	chr21:36249388-36249685(-)$1	297	267	271	11.9999
EEEE	chr1:35646200-35646448(-)$1	248	205	209	11.9999
ggge	chr17:30800933-30801222(+)$1	289	83	87	11.9999
ffff	chr2:96934643-96934931(+)$1	288	76	80	11.9999
]ddd	chr17:34151283-34151554(+)$1	271	253	257	11.9999
m===	chr11:65192492-65192731(+)$1	239	41	45	11.9999
oooo	chr2:173447023-173447310(+)$1	287	191	195	11.9999
22a]	chr17:45024333-45024645(+)$1	312	89	93	11.9999
ff55	chr22:19389278-19389529(-)$1	251	62	66	11.9999
JJJJ	chr3:6550883-6551140(+)$1	257	128	132	11.9999
nnne	chr6:35386854-35387210(+)$1	356	62	66	11.9999
::::	chr10:126784860-126785170(-)$1	310	12	16	11.9999
nnnn	chr11:65193113-65193327(+)$1	214	3	7	11.9999
hhGG	chr18:9926379-9926648(+)$1	269	96	100	11.9999
:::c	chr22:17086391-17086652(+)$1	261	179	183	11.9999
HHHH	chr9:37219999-37220304(+)$1	305	33	37	11.9999
HHHH	chr11:2702697-2702949(-)$1	252	214	218	11.9999
:::g	chr11:75114079-75114321(+)$1	242	8	12	11.9999
gggg	chr21:39429454-39429761(-)$1	307	134	138	11.9999
mfff	chr22:22122454-22122731(-)$1	277	220	224	11.9999
eeee	chr19:5716379-5716611(-)$1	232	170	174	11.9999
JJCC	chr3:187458263-187458538(-)$1	275	34	38	11.9999
ffff	chr19:29020064-29020379(-)$1	315	12	16	11.9999
::::	chr6:87939648-87939948(+)$1	300	25	29	11.9999
ffff	chr7:105180037-105180355(+)$1	318	127	131	11.9999
22bb	chr10:62545625-62545966(+)$1	341	185	189	11.9999
MMMC	chr5:53388407-53388653(-)$1	246	10	14	11.9999
FKKC	chr17:80437608-80437867(+)$1	259	7	11	11.9999
gggg	chr7:158725537-158725799(+)$1	262	215	219	11.9999
iiii	chr16:67205403-67205692(+)$1	289	51	55	11.9999
gggg	chr11:65193098-65193313(+)$1	215	18	22	11.9999
FF{E	chr4:56872-57130(+)$1	258	62	66	11.9999
GGGG	chr7:158532643-158532914(-)$1	271	178	182	11.9999
JJJJ	chr4:139098434-139098748(-)$1	314	272	276	11.9999
CKKB	chr1:21102764-21103035(-)$1	271	47	51	11.9999
::ee	chr3:195786146-195786435(-)$1	289	102	106	11.9999
mddd	chr3:48754005-48754258(-)$1	253	66	70	11.9999
GGG{	chr10:35739032-35739302(+)$1	270	72	76	11.9999
]fff	chr6:36487064-36487336(-)$1	272	241	245	11.9999
::::	chr4:79791535-79791835(+)$1	300	0	4	11.9999
$$$e	chr20:34312412-34312680(-)$1	268	6	10	11.9999
e444	chr4:56283598-56283904(+)$1	306	153	157	11.9999
mmmb	chr20:57563152-57563480(+)$1	328	20	24	11.9999
&&&&	chr16:20696155-20696386(+)$1	231	18	22	11.9999
CC}E	chr3:43750633-43750894(+)$1	261	196	200	11.9999
""cc	chr8:37754754-37755066(-)$1	312	100	104	11.9999
ooob	chr11:10828898-10829159(-)$1	261	33	37	11.9999
qqqf	chr13:111557585-111557868(-)$1	283	130	134	11.9999
mmmb	chr1:16653347-16653627(-)$1	280	183	187	11.9999
ccc[	chr17:30701866-30702120(+)$1	254	52	56	11.9999
eeet	chr1:29390862-29391146(+)$1	284	144	148	11.9999
ggg:	chr7:155507012-155507274(+)$1	262	42	46	11.9999
b22a	chrX:70761332-70761607(+)$1	275	237	241	11.9999
{DDD	chr11:14669474-14669764(+)$1	290	10	14	11.9999
gggg	chr1:35648245-35648532(-)$1	287	57	61	11.9999
fffr	chr14:102299201-102299471(+)$1	270	65	69	11.9999
:::C	chr6:27096474-27096779(-)$1	305	75	79	11.9999

#DB
))))	chr12:121772370-121772679(-)$1	1	50	54	11.9999
((((	chr14:39650061-39650320(+)$1	1	142	146	11.9999
....	chr5:43295586-43295879(-)$1	1	21	25	11.9999
....	chr19:1883805-1884093(-)$1	1	117	121	11.9999
(..(	chr1:161088100-161088509(+)$1	1	30	34	11.9999
((((	chr3:119177895-119178177(-)$1	1	13	17	11.9999
))).	chr1:155945052-155945330(-)$1	1	209	213	11.9999
))))	chr8:109260496-109260799(-)$1	1	68	72	11.9999
((((	chr21:15886390-15886706(-)$1	1	223	227	11.9999
...(	chr1:35656533-35656810(-)$1	1	178	182	11.9999
))..	chr3:9432227-9432493(-)$1	1	96	100	11.9999
))).	chr22:19392393-19392649(-)$1	1	129	133	11.9999
))))	chr6:31596070-31596340(+)$1	1	51	55	11.9999
))).	chr21:35476760-35477070(+)$1	1	20	24	11.9999
...)	chr3:196082532-196082837(-)$1	1	96	100	11.9999
((((	chr3:151994315-151994648(+)$1	1	14	18	11.9999
.(((	chr20:5526311-5526586(-)$1	1	32	36	11.9999
)...	chr5:10355106-10355381(+)$1	1	135	139	11.9999
..))	chr3:195776328-195776617(-)$1	1	91	95	11.9999
...)	chr13:111557067-111557325(-)$1	1	96	100	11.9999
...(	chr6:26124997-26125299(+)$1	1	32	36	11.9999
((..	chr19:55609276-55609582(-)$1	1	166	170	11.9999
...(	chr16:57218388-57218677(-)$1	1	221	225	11.9999
.)))	chr21:36249388-36249685(-)$1	1	267	271	11.9999
))))	chr1:35646200-35646448(-)$1	1	205	209	11.9999
((((	chr17:30800933-30801222(+)$1	1	83	87	11.9999
))))	chr2:96934643-96934931(+)$1	1	76	80	11.9999
.)))	chr17:34151283-34151554(+)$1	1	253	257	11.9999
.)))	chr11:65192492-65192731(+)$1	1	41	45	11.9999
....	chr2:173447023-173447310(+)$1	1	191	195	11.9999
..).	chr17:45024333-45024645(+)$1	1	89	93	11.9999
))..	chr22:19389278-19389529(-)$1	1	62	66	11.9999
((((	chr3:6550883-6551140(+)$1	1	128	132	11.9999
...)	chr6:35386854-35387210(+)$1	1	62	66	11.9999
....	chr10:126784860-126785170(-)$1	1	12	16	11.9999
....	chr11:65193113-65193327(+)$1	1	3	7	11.9999
))))	chr18:9926379-9926648(+)$1	1	96	100	11.9999
...(	chr22:17086391-17086652(+)$1	1	179	183	11.9999
((((	chr9:37219999-37220304(+)$1	1	33	37	11.9999
))))	chr11:2702697-2702949(-)$1	1	214	218	11.9999
...(	chr11:75114079-75114321(+)$1	1	8	12	11.9999
((((	chr21:39429454-39429761(-)$1	1	134	138	11.9999
.)))	chr22:22122454-22122731(-)$1	1	220	224	11.9999
((((	chr19:5716379-5716611(-)$1	1	170	174	11.9999
((((	chr3:187458263-187458538(-)$1	1	34	38	11.9999
((((	chr19:29020064-29020379(-)$1	1	12	16	11.9999
....	chr6:87939648-87939948(+)$1	1	25	29	11.9999
((((	chr7:105180037-105180355(+)$1	1	127	131	11.9999
..))	chr10:62545625-62545966(+)$1	1	185	189	11.9999
...(	chr5:53388407-53388653(-)$1	1	10	14	11.9999
(..(	chr17:80437608-80437867(+)$1	1	7	11	11.9999
))))	chr7:158725537-158725799(+)$1	1	215	219	11.9999
))))	chr16:67205403-67205692(+)$1	1	51	55	11.9999
((((	chr11:65193098-65193313(+)$1	1	18	22	11.9999
((.(	chr4:56872-57130(+)$1	1	62	66	11.9999
))))	chr7:158532643-158532914(-)$1	1	178	182	11.9999
))))	chr4:139098434-139098748(-)$1	1	272	276	11.9999
(..(	chr1:21102764-21103035(-)$1	1	47	51	11.9999
..((	chr3:195786146-195786435(-)$1	1	102	106	11.9999
.)))	chr3:48754005-48754258(-)$1	1	66	70	11.9999
(((.	chr10:35739032-35739302(+)$1	1	72	76	11.9999
.)))	chr6:36487064-36487336(-)$1	1	241	245	11.9999
....	chr4:79791535-79791835(+)$1	1	0	4	11.9999
...(	chr20:34312412-34312680(-)$1	1	6	10	11.9999
)...	chr4:56283598-56283904(+)$1	1	153	157	11.9999
...)	chr20:57563152-57563480(+)$1	1	20	24	11.9999
....	chr16:20696155-20696386(+)$1	1	18	22	11.9999
)).)	chr3:43750633-43750894(+)$1	1	196	200	11.9999
..((	chr8:37754754-37755066(-)$1	1	100	104	11.9999
...)	chr11:10828898-10829159(-)$1	1	33	37	11.9999
...)	chr13:111557585-111557868(-)$1	1	130	134	11.9999
...)	chr1:16653347-16653627(-)$1	1	183	187	11.9999
(((.	chr17:30701866-30702120(+)$1	1	52	56	11.9999
(((.	chr1:29390862-29391146(+)$1	1	144	148	11.9999
))).	chr7:155507012-155507274(+)$1	1	42	46	11.9999
)..)	chrX:70761332-70761607(+)$1	1	237	241	11.9999
.(((	chr11:14669474-14669764(+)$1	1	10	14	11.9999
((((	chr1:35648245-35648532(-)$1	1	57	61	11.9999
(((.	chr14:102299201-102299471(+)$1	1	65	69	11.9999
...)	chr6:27096474-27096779(-)$1	1	75	79	11.9999

#PSSM
U : 0.69	u : 0.30	
U : 0.69	u : 0.30	
U : 0.69	u : 0.30	
G : 0.69	g : 0.30	

#score	959.9999999999999
#seq	80
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_UTR_m1_run2.nuc.txt

#NT
GGGG	chr4:39460310-39460580(-)$1	270	92	96	12.0000
GGGG	chr19:49122194-49122437(-)$1	243	62	66	12.0000
GGGG	chr7:99950459-99950699(+)$1	240	80	84	12.0000
GGGG	chr11:66367835-66368154(+)$1	319	161	165	12.0000
GGGG	chr17:77770150-77770446(-)$1	296	2	6	12.0000
GGGG	chr12:125398872-125399230(-)$1	358	124	128	12.0000
GGGG	chr16:2147111-2147398(-)$1	287	86	90	12.0000
GGGG	chr11:46404213-46404461(+)$1	248	101	105	12.0000
gggg	chr17:42401897-42402137(-)$1	240	76	80	12.0000
gggg	chr6:86352562-86352814(-)$1	252	4	8	12.0000
GGGG	chr9:131035891-131036145(-)$1	254	42	46	12.0000
GGGG	chr9:140348783-140349069(-)$1	286	77	81	12.0000
GGGG	chr12:58142742-58143023(-)$1	281	101	105	12.0000
GGGG	chr6:31638800-31639067(+)$1	267	17	21	12.0000
GGGG	chr8:26149375-26149644(+)$1	269	101	105	12.0000
GGGG	chr20:44520881-44521171(+)$1	290	119	123	12.0000
GGGG	chr22:50696105-50696406(-)$1	301	106	110	12.0000
GGGG	chr21:46915185-46915388(+)$1	203	3	7	12.0000
GGGG	chr4:76598208-76598450(-)$1	242	78	82	12.0000
GGGG	chr22:19394650-19394911(-)$1	261	164	168	12.0000
GGGG	chr17:61907479-61907747(+)$1	268	102	106	12.0000
GGGG	chr20:61437879-61438092(+)$1	213	38	42	12.0000
gggg	chr15:69715543-69715879(+)$1	336	164	168	12.0000
GGGG	chr16:30106318-30106573(-)$1	255	21	25	12.0000
GGGG	chr17:17716451-17716704(-)$1	253	27	31	12.0000
GGGG	chr19:54646754-54646991(+)$1	237	173	177	12.0000
GGGG	chr12:56554057-56554303(+)$1	246	88	92	12.0000
GGGG	chr10:1094572-1094874(-)$1	302	104	108	12.0000
GGGG	chr1:151031671-151031962(-)$1	291	79	83	12.0000
GGGG	chr17:42958943-42959223(-)$1	280	182	186	12.0000
GGGG	chr11:61188593-61188943(-)$1	350	109	113	12.0000
GGGG	chr11:64888322-64888600(-)$1	278	30	34	12.0000
GGGG	chr11:67196432-67196711(+)$1	279	79	83	12.0000
GGGG	chr16:89759762-89760023(+)$1	261	142	146	12.0000
GGGG	chr8:67579797-67580061(+)$1	264	22	26	12.0000
GGGG	chr1:249151851-249152156(-)$1	305	137	141	12.0000
GGGG	chr3:184033429-184033681(+)$1	252	126	130	12.0000
GGGG	chr11:67810886-67811149(+)$1	263	99	103	12.0000
GGGG	chr1:6269017-6269299(+)$1	282	83	87	12.0000
GGGG	chr20:61438819-61439129(+)$1	310	24	28	12.0000
GGGG	chr19:41209387-41209717(-)$1	330	104	108	12.0000
GGGG	chr1:150522451-150522688(+)$1	237	110	114	12.0000
GGGG	chr19:11038922-11039180(-)$1	258	2	6	12.0000
GGGG	chr9:125895011-125895274(-)$1	263	76	80	12.0000
GGGG	chr12:54801453-54801744(-)$1	291	4	8	12.0000
GGGG	chr11:67272403-67272678(-)$1	275	27	31	12.0000
GGGG	chr9:95049936-95050204(-)$1	268	68	72	12.0000
GGGG	chr16:88783516-88783788(-)$1	272	72	76	12.0000
gggg	chr10:103577652-103577917(-)$1	265	10	14	12.0000
GGGG	chr17:34171095-34171390(+)$1	295	44	48	12.0000
GGGG	chr7:26241542-26241802(+)$1	260	100	104	12.0000
GGGG	chr3:197476909-197477190(+)$1	281	40	44	12.0000
GGGG	chr2:97278170-97278428(-)$1	258	106	110	12.0000
GGGG	chr6:33264753-33265046(-)$1	293	60	64	12.0000
GGGG	chr11:62572517-62572798(-)$1	281	34	38	12.0000
gggg	chr1:155947799-155948078(-)$1	279	64	68	12.0000
GGGG	chr19:46027202-46027484(+)$1	282	34	38	12.0000
GGGG	chr3:47040334-47040594(+)$1	260	49	53	12.0000
GGGG	chr12:56554862-56555134(+)$1	272	103	107	12.0000
GGGG	chr5:159848826-159849139(+)$1	313	119	123	12.0000
GGGG	chr8:28906561-28906821(+)$1	260	47	51	12.0000
GGGG	chr19:50879829-50880113(+)$1	284	22	26	12.0000
GGGG	chr11:62592465-62592754(-)$1	289	21	25	12.0000
GGGG	chr1:153949266-153949543(-)$1	277	265	269	12.0000
GGGG	chr1:249151532-249151859(-)$1	327	51	55	12.0000
GGGG	chr10:121336414-121336714(-)$1	300	82	86	12.0000
GGGG	chr19:17449753-17450070(+)$1	317	65	69	12.0000
GGGG	chr6:43484825-43485170(+)$1	345	69	73	12.0000
GGGG	chr17:17139999-17140337(-)$1	338	36	40	12.0000
GGGG	chr17:73664524-73664824(+)$1	300	103	107	12.0000
GGGG	chr19:41782089-41782330(+)$1	241	78	82	12.0000
GGGG	chr17:76120759-76121062(-)$1	303	16	20	12.0000
GGGG	chr10:38384506-38384819(+)$1	313	93	97	12.0000
GGGG	chr1:26880627-26880935(+)$1	308	47	51	12.0000
GGGG	chr11:122932304-122932555(-)$1	251	5	9	12.0000
GGGG	chr3:48637761-48638016(-)$1	255	57	61	12.0000
GGGG	chr2:242255404-242255675(+)$1	271	52	56	12.0000
GGGG	chr16:2012807-2013053(-)$1	246	0	4	12.0000
GGGG	chr3:9475733-9475979(+)$1	246	172	176	12.0000
GGGG	chr6:31727002-31727338(+)$1	336	114	118	12.0000
GGGG	chr14:31028432-31028726(+)$1	294	56	60	12.0000
GGGG	chr19:18682646-18682908(+)$1	262	98	102	12.0000
GGGG	chr19:1271359-1271592(+)$1	233	52	56	12.0000
GGGG	chr16:56969168-56969505(+)$1	337	269	273	12.0000
GGGG	chr22:22048863-22049151(+)$1	288	25	29	12.0000

#otherMatches

#Struct PSSM
:BBK	chr3:47890966-47891243(+)$1	277	0	4	12.0000
EEEE	chr4:39460310-39460580(-)$1	270	92	96	12.0000
a[ee	chr19:49122194-49122437(-)$1	243	62	66	12.0000
ffff	chr7:99950459-99950699(+)$1	240	80	84	12.0000
]ddd	chr11:66367835-66368154(+)$1	319	161	165	12.0000
GGGG	chr17:77770150-77770446(-)$1	296	2	6	12.0000
e[an	chr12:125398872-125399230(-)$1	358	124	128	12.0000
eeee	chr16:2147111-2147398(-)$1	287	86	90	12.0000
eeee	chr11:46404213-46404461(+)$1	248	101	105	12.0000
bb]c	chr17:42401897-42402137(-)$1	240	76	80	12.0000
KBB{	chr6:86352562-86352814(-)$1	252	4	8	12.0000
]ccc	chr9:131035891-131036145(-)$1	254	42	46	12.0000
Fddd	chr9:140348783-140349069(-)$1	286	77	81	12.0000
wwww	chr12:58142742-58143023(-)$1	281	101	105	12.0000
{CCC	chr6:31638800-31639067(+)$1	267	17	21	12.0000
ccc]	chr8:26149375-26149644(+)$1	269	101	105	12.0000
dddd	chr20:44520881-44521171(+)$1	290	119	123	12.0000
ff[b	chr22:50696105-50696406(-)$1	301	106	110	12.0000
[ddd	chr21:46915185-46915388(+)$1	203	3	7	12.0000
eedd	chr4:76598208-76598450(-)$1	242	78	82	12.0000
====	chr22:19394650-19394911(-)$1	261	164	168	12.0000
g[cc	chr17:61907479-61907747(+)$1	268	102	106	12.0000
ccc]	chr20:61437879-61438092(+)$1	213	38	42	12.0000
dddd	chr15:69715543-69715879(+)$1	336	164	168	12.0000
ffff	chr16:30106318-30106573(-)$1	255	21	25	12.0000
LLDD	chr17:17716451-17716704(-)$1	253	27	31	12.0000
]fff	chr19:54646754-54646991(+)$1	237	173	177	12.0000
oocc	chr12:56554057-56554303(+)$1	246	88	92	12.0000
2a22	chr10:1094572-1094874(-)$1	302	104	108	12.0000
qqff	chr1:151031671-151031962(-)$1	291	79	83	12.0000
22a:	chr17:42958943-42959223(-)$1	280	182	186	12.0000
ffff	chr11:61188593-61188943(-)$1	350	109	113	12.0000
ggg#	chr11:64888322-64888600(-)$1	278	30	34	12.0000
KKCC	chr11:67196432-67196711(+)$1	279	79	83	12.0000
3ccc	chr16:89759762-89760023(+)$1	261	142	146	12.0000
hhhh	chr8:67579797-67580061(+)$1	264	22	26	12.0000
iiii	chr1:249151851-249152156(-)$1	305	137	141	12.0000
ffff	chr3:184033429-184033681(+)$1	252	126	130	12.0000
ffii	chr11:67810886-67811149(+)$1	263	99	103	12.0000
22dd	chr1:6269017-6269299(+)$1	282	83	87	12.0000
dddn	chr20:61438819-61439129(+)$1	310	24	28	12.0000
JJJJ	chr19:41209387-41209717(-)$1	330	104	108	12.0000
ieee	chr1:150522451-150522688(+)$1	237	110	114	12.0000
FFFF	chr19:11038922-11039180(-)$1	258	2	6	12.0000
eeed	chr9:125895011-125895274(-)$1	263	76	80	12.0000
eeee	chr12:54801453-54801744(-)$1	291	4	8	12.0000
eemm	chr11:67272403-67272678(-)$1	275	27	31	12.0000
CCKK	chr9:95049936-95050204(-)$1	268	68	72	12.0000
cc]b	chr16:88783516-88783788(-)$1	272	72	76	12.0000
GGBB	chr10:103577652-103577917(-)$1	265	10	14	12.0000
eeee	chr17:34171095-34171390(+)$1	295	44	48	12.0000
gggg	chr7:26241542-26241802(+)$1	260	100	104	12.0000
A{GG	chr3:197476909-197477190(+)$1	281	40	44	12.0000
C{DD	chr2:97278170-97278428(-)$1	258	106	110	12.0000
ffff	chr6:33264753-33265046(-)$1	293	60	64	12.0000
gnnn	chr11:62572517-62572798(-)$1	281	34	38	12.0000
tttt	chr1:155947799-155948078(-)$1	279	64	68	12.0000
f)))	chr19:46027202-46027484(+)$1	282	34	38	12.0000
CCC{	chr3:47040334-47040594(+)$1	260	49	53	12.0000
ffff	chr12:56554862-56555134(+)$1	272	103	107	12.0000
:BBC	chr5:159848826-159849139(+)$1	313	119	123	12.0000
ppff	chr8:28906561-28906821(+)$1	260	47	51	12.0000
hhhh	chr19:50879829-50880113(+)$1	284	22	26	12.0000
IIII	chr11:62592465-62592754(-)$1	289	21	25	12.0000
lldd	chr1:153949266-153949543(-)$1	277	265	269	12.0000
ffff	chr1:249151532-249151859(-)$1	327	51	55	12.0000
dddd	chr10:121336414-121336714(-)$1	300	82	86	12.0000
cc22	chr19:17449753-17450070(+)$1	317	65	69	12.0000
e"""	chr6:43484825-43485170(+)$1	345	69	73	12.0000
llcc	chr17:17139999-17140337(-)$1	338	36	40	12.0000
oooo	chr17:73664524-73664824(+)$1	300	103	107	12.0000
fff]	chr19:41782089-41782330(+)$1	241	78	82	12.0000
EEE{	chr17:76120759-76121062(-)$1	303	16	20	12.0000
IIII	chr10:38384506-38384819(+)$1	313	93	97	12.0000
FFFE	chr1:26880627-26880935(+)$1	308	47	51	12.0000
cccc	chr11:122932304-122932555(-)$1	251	5	9	12.0000
hhhh	chr3:48637761-48638016(-)$1	255	57	61	12.0000
eeee	chr2:242255404-242255675(+)$1	271	52	56	12.0000
gggg	chr16:2012807-2013053(-)$1	246	0	4	12.0000
IIII	chr3:9475733-9475979(+)$1	246	172	176	12.0000
2bbe	chr6:31727002-31727338(+)$1	336	114	118	12.0000
eeee	chr14:31028432-31028726(+)$1	294	56	60	12.0000
[hhh	chr19:18682646-18682908(+)$1	262	98	102	12.0000
gggg	chr19:1271359-1271592(+)$1	233	52	56	12.0000
YJJJ	chr16:56969168-56969505(+)$1	337	269	273	12.0000
ii!!	chr22:22048863-22049151(+)$1	288	25	29	12.0000

#DB
.((.	chr3:47890966-47891243(+)$1	1	0	4	12.0000
))))	chr4:39460310-39460580(-)$1	1	92	96	12.0000
(.((	chr19:49122194-49122437(-)$1	1	62	66	12.0000
((((	chr7:99950459-99950699(+)$1	1	80	84	12.0000
.)))	chr11:66367835-66368154(+)$1	1	161	165	12.0000
((((	chr17:77770150-77770446(-)$1	1	2	6	12.0000
(.(.	chr12:125398872-125399230(-)$1	1	124	128	12.0000
))))	chr16:2147111-2147398(-)$1	1	86	90	12.0000
((((	chr11:46404213-46404461(+)$1	1	101	105	12.0000
)).)	chr17:42401897-42402137(-)$1	1	76	80	12.0000
.((.	chr6:86352562-86352814(-)$1	1	4	8	12.0000
.)))	chr9:131035891-131036145(-)$1	1	42	46	12.0000
)(((	chr9:140348783-140349069(-)$1	1	77	81	12.0000
....	chr12:58142742-58143023(-)$1	1	101	105	12.0000
.(((	chr6:31638800-31639067(+)$1	1	17	21	12.0000
))).	chr8:26149375-26149644(+)$1	1	101	105	12.0000
((((	chr20:44520881-44521171(+)$1	1	119	123	12.0000
((.(	chr22:50696105-50696406(-)$1	1	106	110	12.0000
.(((	chr21:46915185-46915388(+)$1	1	3	7	12.0000
))))	chr4:76598208-76598450(-)$1	1	78	82	12.0000
((((	chr22:19394650-19394911(-)$1	1	164	168	12.0000
(.((	chr17:61907479-61907747(+)$1	1	102	106	12.0000
))).	chr20:61437879-61438092(+)$1	1	38	42	12.0000
))))	chr15:69715543-69715879(+)$1	1	164	168	12.0000
((((	chr16:30106318-30106573(-)$1	1	21	25	12.0000
..((	chr17:17716451-17716704(-)$1	1	27	31	12.0000
.)))	chr19:54646754-54646991(+)$1	1	173	177	12.0000
..))	chr12:56554057-56554303(+)$1	1	88	92	12.0000
.)..	chr10:1094572-1094874(-)$1	1	104	108	12.0000
..))	chr1:151031671-151031962(-)$1	1	79	83	12.0000
..).	chr17:42958943-42959223(-)$1	1	182	186	12.0000
))))	chr11:61188593-61188943(-)$1	1	109	113	12.0000
(((.	chr11:64888322-64888600(-)$1	1	30	34	12.0000
..((	chr11:67196432-67196711(+)$1	1	79	83	12.0000
.)))	chr16:89759762-89760023(+)$1	1	142	146	12.0000
))))	chr8:67579797-67580061(+)$1	1	22	26	12.0000
))))	chr1:249151851-249152156(-)$1	1	137	141	12.0000
((((	chr3:184033429-184033681(+)$1	1	126	130	12.0000
((((	chr11:67810886-67811149(+)$1	1	99	103	12.0000
..))	chr1:6269017-6269299(+)$1	1	83	87	12.0000
(((.	chr20:61438819-61439129(+)$1	1	24	28	12.0000
((((	chr19:41209387-41209717(-)$1	1	104	108	12.0000
((((	chr1:150522451-150522688(+)$1	1	110	114	12.0000
((((	chr19:11038922-11039180(-)$1	1	2	6	12.0000
((((	chr9:125895011-125895274(-)$1	1	76	80	12.0000
((((	chr12:54801453-54801744(-)$1	1	4	8	12.0000
((..	chr11:67272403-67272678(-)$1	1	27	31	12.0000
((..	chr9:95049936-95050204(-)$1	1	68	72	12.0000
)).)	chr16:88783516-88783788(-)$1	1	72	76	12.0000
((((	chr10:103577652-103577917(-)$1	1	10	14	12.0000
))))	chr17:34171095-34171390(+)$1	1	44	48	12.0000
((((	chr7:26241542-26241802(+)$1	1	100	104	12.0000
(.((	chr3:197476909-197477190(+)$1	1	40	44	12.0000
(.((	chr2:97278170-97278428(-)$1	1	106	110	12.0000
))))	chr6:33264753-33265046(-)$1	1	60	64	12.0000
(...	chr11:62572517-62572798(-)$1	1	34	38	12.0000
....	chr1:155947799-155948078(-)$1	1	64	68	12.0000
(...	chr19:46027202-46027484(+)$1	1	34	38	12.0000
(((.	chr3:47040334-47040594(+)$1	1	49	53	12.0000
))))	chr12:56554862-56555134(+)$1	1	103	107	12.0000
.)))	chr5:159848826-159849139(+)$1	1	119	123	12.0000
..))	chr8:28906561-28906821(+)$1	1	47	51	12.0000
((((	chr19:50879829-50880113(+)$1	1	22	26	12.0000
((((	chr11:62592465-62592754(-)$1	1	21	25	12.0000
..))	chr1:153949266-153949543(-)$1	1	265	269	12.0000
((((	chr1:249151532-249151859(-)$1	1	51	55	12.0000
((((	chr10:121336414-121336714(-)$1	1	82	86	12.0000
))..	chr19:17449753-17450070(+)$1	1	65	69	12.0000
(...	chr6:43484825-43485170(+)$1	1	69	73	12.0000
..))	chr17:17139999-17140337(-)$1	1	36	40	12.0000
....	chr17:73664524-73664824(+)$1	1	103	107	12.0000
))).	chr19:41782089-41782330(+)$1	1	78	82	12.0000
(((.	chr17:76120759-76121062(-)$1	1	16	20	12.0000
))))	chr10:38384506-38384819(+)$1	1	93	97	12.0000
((((	chr1:26880627-26880935(+)$1	1	47	51	12.0000
((((	chr11:122932304-122932555(-)$1	1	5	9	12.0000
((((	chr3:48637761-48638016(-)$1	1	57	61	12.0000
))))	chr2:242255404-242255675(+)$1	1	52	56	12.0000
((((	chr16:2012807-2013053(-)$1	1	0	4	12.0000
))))	chr3:9475733-9475979(+)$1	1	172	176	12.0000
.)))	chr6:31727002-31727338(+)$1	1	114	118	12.0000
))))	chr14:31028432-31028726(+)$1	1	56	60	12.0000
.(((	chr19:18682646-18682908(+)$1	1	98	102	12.0000
((((	chr19:1271359-1271592(+)$1	1	52	56	12.0000
.)))	chr16:56969168-56969505(+)$1	1	269	273	12.0000
((..	chr22:22048863-22049151(+)$1	1	25	29	12.0000

#PSSM
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	
G : 0.94	g : 0.05	

#score	1032.0000000000002
#seq	86
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_UTR_m1_run1.nuc.txt

#NT
UGUUUUGGAAGAAAAAAAGAAAAAGAACAAA	chr17:46698427-46698676(-)$1	249	102	133	34.3392
CUUUUAUAAUAAAAAAAAGAAGUUGAGUAAA	chr1:32508413-32508627(+)$1	214	95	126	31.5714
UUUUUUUUAAAAAACAACAAAAAAAAAAACA	chr21:44512990-44513221(-)$1	231	82	113	44.6071
auuuauuauuaaaaaauccaaaaaaaaucua	chr8:101734116-101734344(-)$1	228	90	121	29.1607
UUUUUCCaaaaaaaaaagaaaaaaaaauaga	chr19:1258684-1258928(+)$1	244	100	131	43.2678
UUUAUUUAAUAAAAACUAAAAACAGAAACAG	chr19:50886019-50886276(+)$1	257	192	223	34.9642
uuuuuuuaaaaaaagaaaacuuuaaaaaaaC	chr3:128338890-128339159(-)$1	269	96	127	40.0535
CUUUUAUAAUAAAAAAAAGAAGUUGAGUAAA	chr1:32508369-32508613(+)$1	244	139	170	31.5714
GUAUUUGUAAAAAAACAAAAAGCAAAAAAAU	chr5:151184283-151184535(+)$1	252	97	128	33.7142
ACuuuuuaaaaaaaaaaaaaauuuaaaaaaa	chr17:56050935-56051185(-)$1	250	59	90	44.6964
GACUUGUAAAAAAAAAAAACUACAAAAAAAU	chr22:22114551-22114907(-)$1	356	228	259	32.9999
UUUUUAAAAAAAUGAAAGUAAAGGAAAAAAA	chr3:50296203-50296465(+)$1	262	103	134	33.6249
uuuuuuuguaaaaaaaaaaaaaugaaaaaaa	chr7:21554052-21554310(+)$1	258	88	119	47.0178
uguuuuauauuaaaaaagaaaagaaaagaau	chr1:29474185-29474471(-)$1	286	96	127	31.4821
UUUUUUUUAAAAAACAACAAAAAAAAAAACA	chr21:44513021-44513263(-)$1	242	124	155	44.6071
uuuuuuuaaGAAAGGAGGAAAAGAAACCAAA	chr1:203276584-203276885(+)$1	301	99	130	34.8749
UUUGUAUAAAAAGCAAAAAGAAAAAAAAAAU	chr9:135973042-135973335(-)$1	293	105	136	37.7321
auuuauuauuaaaaaauccaaaaaaaaucua	chr8:101734082-101734294(-)$1	212	40	71	29.1607
ACUUAUUaaaaaaaaaaaaagaaaaagaaaa	chr20:45838945-45839220(-)$1	275	109	140	41.4821
UUUUUUAAAGAAAUGGGAAGAAGAAAAAAAA	chr19:18390586-18390863(-)$1	277	99	130	34.6964
GUUUUUUAUAAAACUUUAAAAAGGAAAAAAA	chr3:51435663-51435934(-)$1	271	90	121	35.2321
UUUUUUUAAAAAACAAAAACCACAAAAAUUC	chr14:70238099-70238357(+)$1	258	105	136	36.9285
UUUUUGUaaaaaaaaaaaaaaaggaaaaaaa	chr18:60997902-60998179(-)$1	277	115	146	51.2142
AUUUUCUaagaaccaaaaaaaaaaaaggaaa	chr19:39220609-39220885(+)$1	276	107	138	36.7500
UCuuuuuaaaaaacaaaaaaaagaacaaaaa	chr15:38776983-38777255(+)$1	272	106	137	45.6785
uuuuuuaaaaaaaauuuuguaauaaaauuau	chr4:174252775-174253014(-)$1	239	124	155	26.3928
UUUUUUUAAUGAAAAGAAAAAACAAGAAAGU	chr17:47128505-47128752(+)$1	247	96	127	37.1071
auuuauuauuaaaaaauccaaaaaaaaucua	chr8:101734094-101734316(-)$1	222	62	93	29.1607
UUUUUGUAAGAAAAAAGAAAAACCAACAAAA	chr2:204296397-204296646(+)$1	249	97	128	41.5714
UUUUAUUaaaaaaaaaaagaaaaaaaaagaa	chr1:205687228-205687520(-)$1	292	137	168	47.9107
UUUUUUUAAGAAAAUAUUAAAAAUCAACGGU	chr1:202860148-202860430(-)$1	282	146	177	27.1071
uuuuucuauaaaaagaaaaaaauGGAAAAAA	chr12:25361984-25362233(-)$1	249	100	131	42.0178
AUUUUGuaaaaaaaauaaauaaaauaaaaaa	chr17:7757640-7757915(+)$1	275	78	109	42.3750
UGUUUUGGAAGAAAAAAAGAAAAAGAACAAA	chr17:46698476-46698707(-)$1	231	133	164	34.3392
UUUUUUAAAGAAAUGGGAAGAAGAAAAAAAA	chr19:18390666-18390885(-)$1	219	121	152	34.6964
uuuuuuuaaauaaaaauuuucaaaaaguuaa	chr17:27589256-27589525(-)$1	269	99	130	28.5357
UUUUUCUAAAAAAAGAAAAAAGAAGAAAAAA	chr14:35870988-35871277(-)$1	289	115	146	46.3928
uuuuuuuaaaaaaaaaaaaaaacaaaauaaC	chrX:123234620-123234884(+)$1	264	106	137	52.1071
UUUUUUUAAGAAAAAAAGAUGAAAAAUGAAA	chr7:100278803-100279081(-)$1	278	94	125	38.5357
UUUUUAUAUGUAAAAACAAAACAAGAAAAAA	chr6:43753844-43754101(+)$1	257	100	131	37.1071
AUUUUUUAAAUAAAUGCaaaaaauaaaaaua	chr11:47491731-47491997(-)$1	266	98	129	36.4821
UUGAUUUAAAAACAAAAAAACACAAAAAAAU	chr8:101715364-101715617(-)$1	253	222	253	38.0892
auuuauuauuaaaaaauccaaaaaaaaucua	chr8:101734155-101734404(-)$1	249	150	181	29.1607
UUUUUUUAAAAAACAAAAACCACAAAAAUUC	chr14:70238190-70238477(+)$1	287	14	45	36.9285
uauuuuuuuaaaaaaaaaaaaGCAAAGCUUU	chr12:89984431-89984714(-)$1	283	92	123	28.2678
UUUUUAGaaaaagaacaaaaaaagaaaaaaa	chr19:10578460-10578707(+)$1	247	101	132	42.0178
UUUUUAUAUGUAAAAACAAAACAAGAAAAAA	chr6:43753926-43754176(+)$1	250	18	49	37.1071
UUUUUCUaaaaaacaaacaaaaaaaaaaaca	chr17:47676744-47677007(-)$1	263	110	141	45.8571
ACuuuuuaaaaaaaaaaaaaauuuaaaaaaa	chr17:56050985-56051202(-)$1	217	76	107	44.6964
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa	chr8:23429727-23430007(+)$1	280	2	33	34.9642
CUUUUAUAUAAAAAUGAAAAUGGAAAAAAAG	chr1:151376538-151376834(-)$1	296	113	144	32.1964
UUUUUUAAAAAAAAAUGAAAAAGAAAAAAAA	chr11:76261279-76261569(+)$1	290	102	133	47.8214
uuauuuuaaaaaaaugaaaaauuaauuuaaa	chr14:69254688-69254951(-)$1	263	87	118	32.7321
UUUACAGAAAAAAAACAAAAAACAACAAAAA	chr19:45406784-45407035(+)$1	251	109	140	35.7678
CUUUUAUAAUAAAAAAAAGAAGUUGAGUAAA	chr1:32508427-32508681(+)$1	254	81	112	31.5714

#otherMatches

#Struct PSSM
^^^^^^^^^^^^^^^^hhhhhhhh55555dd	chr1:93602579-93602835(+)$1	256	90	121	40.2321
hhhhhhzzzzzzzzzzzzzzzzzhhhhhhhh	chr17:46698427-46698676(-)$1	249	102	133	34.3392
bbffffff]dddd22ggggggg22eeeee00	chr1:32508413-32508627(+)$1	214	95	126	31.5714
$$$$$ffffff[ccc++++++++++++++++	chr21:44512990-44513221(-)$1	231	82	113	44.6071
gg:::::::::::::::::::::::::::ee	chr8:101734116-101734344(-)$1	228	90	121	29.1607
JJJJJJJJ}GGGGGGG:::::::::::::::	chr19:1258684-1258928(+)$1	244	100	131	43.2678
ffffflllffffff::::::::::::::::c	chr19:50886019-50886276(+)$1	257	192	223	34.9642
qqqqqqq===========bb7777777ffff	chr3:128338890-128339159(-)$1	269	96	127	40.0535
bbffffff]dddd22ggggggg22eeeee00	chr1:32508369-32508613(+)$1	244	139	170	31.5714
ee[cccmmmmccc]eeeeeeeeeehhhhhhh	chr5:151184283-151184535(+)$1	252	97	128	33.7142
$$hhhhhhhhttttttttttthhhhhhhh44	chr17:56050935-56051185(-)$1	250	59	90	44.6964
:::eeeeeuuuuuuuuuuuueeeee::::::	chr22:22114551-22114907(-)$1	356	228	259	32.9999
ggggg:::::::::::::::::DDDD:::::	chr3:50296203-50296465(+)$1	262	103	134	33.6249
iiiiiiipppppppiiiiiiiii::::::::	chr7:21554052-21554310(+)$1	258	88	119	47.0178
ooooodddd::::::::ffffff"""fffff	chr1:29474185-29474471(-)$1	286	96	127	31.4821
hhhhhhhhttttttttttthhhhhhhh::::	chr21:44513021-44513263(-)$1	242	124	155	44.6071
eee]hhhhhhhh]a]bb:iiiiiiiiinnnn	chr1:203276584-203276885(+)$1	301	99	130	34.8749
{EEEEE::::gggggggxxxxxxxxxxxxxx	chr9:135973042-135973335(-)$1	293	105	136	37.7321
gg:::::::::::::::::::::::::::ee	chr8:101734082-101734294(-)$1	212	40	71	29.1607
!ccc[bbqqqqqqqqbb]ccc22dddd4444	chr20:45838945-45839220(-)$1	275	109	140	41.4821
dd&&&&&&&dddd[ccc!!bb[cccpppppp	chr19:18390586-18390863(-)$1	277	99	130	34.6964
hhhhhhhh:::::cccmmmmccc::::::::	chr3:51435663-51435934(-)$1	271	90	121	35.2321
:::::::::::::::::::dddd%%%%%%ee	chr14:70238099-70238357(+)$1	258	105	136	36.9285
eeeeeooooooeeeee::::::ggggggg!!	chr18:60997902-60998179(-)$1	277	115	146	51.2142
HHHHHHH:::::bbuuuuuuuuuuuubb:::	chr19:39220609-39220885(+)$1	276	107	138	36.7500
gggggggssssssssssgggggggdddd:::	chr15:38776983-38777255(+)$1	272	106	137	45.6785
ggggglllggggggg22gggggggccc22bb	chr4:174252775-174253014(-)$1	239	124	155	26.3928
ggggggglllggggggg]ddddeeeee22dd	chr17:47128505-47128752(+)$1	247	96	127	37.1071
gg:::::::::::::::::::::::::::ee	chr8:101734094-101734316(-)$1	222	62	93	29.1607
JJJJJJJJJJ:::::::::::::::::::::	chr2:204296397-204296646(+)$1	249	97	128	41.5714
eeffffff:::::::::::::::::::::::	chr1:205687228-205687520(-)$1	292	137	168	47.9107
::gggggggpppppppggggggg:ccc[a[d	chr1:202860148-202860430(-)$1	282	146	177	27.1071
=========uuuuuuuuuuuu==========	chr12:25361984-25362233(-)$1	249	100	131	42.0178
hhhhhhhttttttttttthhhhhhhh:::::	chr17:7757640-7757915(+)$1	275	78	109	42.3750
hhhhhhzzzzzzzzzzzzzzzzzhhhhhhhh	chr17:46698476-46698707(-)$1	231	133	164	34.3392
ffffflllffffff]bb]a]ggggggg4444	chr19:18390666-18390885(-)$1	219	121	152	34.6964
=======^^^^^^^^^^^^^^^^^^^^^^^^	chr17:27589256-27589525(-)$1	269	99	130	28.5357
gggggggvvvvvvvvvvvvvggggggggggg	chr14:35870988-35871277(-)$1	289	115	146	46.3928
hhhhhhhoooooohhhhhhhh]bbffffff:	chrX:123234620-123234884(+)$1	264	106	137	52.1071
===mmmm=============]eeeee22eee	chr7:100278803-100279081(-)$1	278	94	125	38.5357
ggggpppppppggggggg::::::ffffff!	chr6:43753844-43754101(+)$1	257	100	131	37.1071
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^	chr11:47491731-47491997(-)$1	266	98	129	36.4821
nggggggg::::::::::::EEEEE::::::	chr8:101715364-101715617(-)$1	253	222	253	38.0892
gg:::::::::::::::::::::::::::ee	chr8:101734155-101734404(-)$1	249	150	181	29.1607
=======%%%%%%dddd!!dddd%%%%%%ee	chr14:70238190-70238477(+)$1	287	14	45	36.9285
=========&&&&&&&ggggggg"""fffff	chr12:89984431-89984714(-)$1	283	92	123	28.2678
nnnccc]bb22ddddhhhhhhhh]dddd:::	chr19:10578460-10578707(+)$1	247	101	132	42.0178
{DDDDLLLCCC:::::::::::::ffffff!	chr6:43753926-43754176(+)$1	250	18	49	37.1071
)ffffff^^^^^^^^^^^^^^^^^^^^^^^^	chr17:47676744-47677007(-)$1	263	110	141	45.8571
$$hhhhhhhhttttttttttthhhhhhhh44	chr17:56050985-56051202(-)$1	217	76	107	44.6964
:::::::::::::::::::::::::::::::	chr8:23429727-23430007(+)$1	280	2	33	34.9642
:ffffffooooooffffff::eeeeeeeeee	chr1:151376538-151376834(-)$1	296	113	144	32.1964
hhhhhhhqqqqqqqqhhhhhhhh::::JJJJ	chr11:76261279-76261569(+)$1	290	102	133	47.8214
iiiiiiillliiiiiiiiiffffff000000	chr14:69254688-69254951(-)$1	263	87	118	32.7321
dddoooooodddd::::::::::::::::::	chr19:45406784-45407035(+)$1	251	109	140	35.7678
bbffffff]dddd22ggggggg22eeeee00	chr1:32508427-32508681(+)$1	254	81	112	31.5714

#DB
................)))))))).....))	chr1:93602579-93602835(+)$1	1	90	121	40.2321
((((((.................))))))))	chr17:46698427-46698676(-)$1	1	102	133	34.3392
)))))))).))))..)))))))..)))))..	chr1:32508413-32508627(+)$1	1	95	126	31.5714
.....((((((.(((................	chr21:44512990-44513221(-)$1	1	82	113	44.6071
))...........................((	chr8:101734116-101734344(-)$1	1	90	121	29.1607
)))))))).)))))))...............	chr19:1258684-1258928(+)$1	1	100	131	43.2678
(((((...))))))................(	chr19:50886019-50886276(+)$1	1	192	223	34.9642
.......))))))))))))).......))))	chr3:128338890-128339159(-)$1	1	96	127	40.0535
)))))))).))))..)))))))..)))))..	chr1:32508369-32508613(+)$1	1	139	170	31.5714
((.(((....))).)))))))))))))))))	chr5:151184283-151184535(+)$1	1	97	128	33.7142
..((((((((...........))))))))..	chr17:56050935-56051185(-)$1	1	59	90	44.6964
...(((((............)))))......	chr22:22114551-22114907(-)$1	1	228	259	32.9999
))))).................((((.....	chr3:50296203-50296465(+)$1	1	103	134	33.6249
(((((((.......)))))))))........	chr7:21554052-21554310(+)$1	1	88	119	47.0178
.....))))........((((((...(((((	chr1:29474185-29474471(-)$1	1	96	127	31.4821
((((((((...........))))))))....	chr21:44513021-44513263(-)$1	1	124	155	44.6071
))).)))))))).).)).(((((((((....	chr1:203276584-203276885(+)$1	1	99	130	34.8749
.(((((....(((((((..............	chr9:135973042-135973335(-)$1	1	105	136	37.7321
))...........................((	chr8:101734082-101734294(-)$1	1	40	71	29.1607
.(((.((........)).)))..))))....	chr20:45838945-45839220(-)$1	1	109	140	41.4821
((.......((((.(((..((.(((......	chr19:18390586-18390863(-)$1	1	99	130	34.6964
)))))))).....(((....)))........	chr3:51435663-51435934(-)$1	1	90	121	35.2321
...................((((......((	chr14:70238099-70238357(+)$1	1	105	136	36.9285
(((((......)))))......(((((((..	chr18:60997902-60998179(-)$1	1	115	146	51.2142
(((((((.....((............))...	chr19:39220609-39220885(+)$1	1	107	138	36.7500
(((((((..........)))))))))))...	chr15:38776983-38777255(+)$1	1	106	137	45.6785
(((((...)))))))..))))))))))..))	chr4:174252775-174253014(-)$1	1	124	155	26.3928
(((((((...))))))).)))))))))..))	chr17:47128505-47128752(+)$1	1	96	127	37.1071
))...........................((	chr8:101734094-101734316(-)$1	1	62	93	29.1607
((((((((((.....................	chr2:204296397-204296646(+)$1	1	97	128	41.5714
)))))))).......................	chr1:205687228-205687520(-)$1	1	137	168	47.9107
..(((((((.......))))))).(((.(.(	chr1:202860148-202860430(-)$1	1	146	177	27.1071
(((((((((............))))))))))	chr12:25361984-25362233(-)$1	1	100	131	42.0178
(((((((...........)))))))).....	chr17:7757640-7757915(+)$1	1	78	109	42.3750
((((((.................))))))))	chr17:46698476-46698707(-)$1	1	133	164	34.3392
(((((...)))))).)).).)))))))....	chr19:18390666-18390885(-)$1	1	121	152	34.6964
(((((((........................	chr17:27589256-27589525(-)$1	1	99	130	28.5357
(((((((.............)))))))))))	chr14:35870988-35871277(-)$1	1	115	146	46.3928
(((((((......)))))))).)))))))).	chrX:123234620-123234884(+)$1	1	106	137	52.1071
(((....))))))))))))).)))))..)))	chr7:100278803-100279081(-)$1	1	94	125	38.5357
((((.......)))))))......((((((.	chr6:43753844-43754101(+)$1	1	100	131	37.1071
(((((((........................	chr11:47491731-47491997(-)$1	1	98	129	36.4821
.)))))))............)))))......	chr8:101715364-101715617(-)$1	1	222	253	38.0892
))...........................((	chr8:101734155-101734404(-)$1	1	150	181	29.1607
(((((((......((((..((((......((	chr14:70238190-70238477(+)$1	1	14	45	36.9285
(((((((((.......(((((((...(((((	chr12:89984431-89984714(-)$1	1	92	123	28.2678
...))).))..)))))))))))).))))...	chr19:10578460-10578707(+)$1	1	101	132	42.0178
.((((...(((.............((((((.	chr6:43753926-43754176(+)$1	1	18	49	37.1071
.((((((........................	chr17:47676744-47677007(-)$1	1	110	141	45.8571
..((((((((...........))))))))..	chr17:56050985-56051202(-)$1	1	76	107	44.6964
...............................	chr8:23429727-23430007(+)$1	1	2	33	34.9642
.((((((......))))))..((((((((((	chr1:151376538-151376834(-)$1	1	113	144	32.1964
(((((((........))))))))....))))	chr11:76261279-76261569(+)$1	1	102	133	47.8214
(((((((...)))))))))))))))......	chr14:69254688-69254951(-)$1	1	87	118	32.7321
(((......))))..................	chr19:45406784-45407035(+)$1	1	109	140	35.7678
)))))))).))))..)))))))..)))))..	chr1:32508427-32508681(+)$1	1	81	112	31.5714

#PSSM
U : 0.49	u : 0.17	A : 0.10	a : 0.08	C : 0.07	G : 0.05	
U : 0.60	u : 0.21	C : 0.07	G : 0.03	a : 0.03	A : 0.01	g : 0.01	
U : 0.62	u : 0.28	a : 0.03	A : 0.01	C : 0.01	G : 0.01	
U : 0.58	u : 0.30	A : 0.05	C : 0.01	G : 0.01	a : 0.01	
U : 0.62	u : 0.23	a : 0.08	A : 0.03	C : 0.01	
U : 0.35	u : 0.28	A : 0.17	C : 0.07	G : 0.07	c : 0.01	a : 0.01	
U : 0.46	u : 0.28	A : 0.08	G : 0.08	a : 0.05	C : 0.01	
A : 0.44	a : 0.41	U : 0.05	G : 0.03	u : 0.03	g : 0.01	
A : 0.46	a : 0.33	u : 0.12	U : 0.07	
a : 0.33	A : 0.32	G : 0.14	U : 0.08	u : 0.08	g : 0.01	
A : 0.44	a : 0.41	G : 0.05	U : 0.05	u : 0.03	
A : 0.55	a : 0.44	
A : 0.49	a : 0.41	U : 0.01	G : 0.01	c : 0.01	C : 0.01	g : 0.01	
A : 0.41	a : 0.39	C : 0.07	c : 0.05	G : 0.03	U : 0.03	
A : 0.37	a : 0.37	G : 0.07	U : 0.07	C : 0.03	g : 0.03	u : 0.03	
A : 0.37	a : 0.37	G : 0.08	C : 0.05	U : 0.03	u : 0.03	c : 0.01	g : 0.01	
A : 0.35	a : 0.33	u : 0.10	G : 0.08	U : 0.05	C : 0.05	
A : 0.42	a : 0.30	c : 0.08	G : 0.05	C : 0.03	g : 0.03	u : 0.03	U : 0.01	
A : 0.42	a : 0.33	G : 0.08	c : 0.07	g : 0.03	U : 0.01	u : 0.01	
A : 0.41	a : 0.39	C : 0.05	G : 0.05	u : 0.05	c : 0.01	U : 0.01	
A : 0.41	a : 0.41	C : 0.05	G : 0.03	U : 0.03	u : 0.01	g : 0.01	c : 0.01	
A : 0.37	a : 0.37	G : 0.12	u : 0.07	C : 0.03	U : 0.01	
a : 0.24	C : 0.19	A : 0.17	u : 0.12	G : 0.12	U : 0.05	g : 0.05	c : 0.01	
A : 0.42	a : 0.32	U : 0.07	u : 0.05	G : 0.05	g : 0.05	C : 0.01	
a : 0.41	A : 0.37	G : 0.17	C : 0.01	u : 0.01	
A : 0.53	a : 0.39	c : 0.01	G : 0.01	u : 0.01	C : 0.01	
A : 0.44	a : 0.35	G : 0.07	g : 0.05	C : 0.03	U : 0.01	u : 0.01	
A : 0.41	a : 0.23	u : 0.16	C : 0.08	U : 0.05	g : 0.03	G : 0.01	
A : 0.48	a : 0.30	c : 0.07	U : 0.05	u : 0.03	C : 0.01	g : 0.01	G : 0.01	
A : 0.44	a : 0.30	u : 0.08	U : 0.05	C : 0.03	G : 0.03	g : 0.01	c : 0.01	
A : 0.35	a : 0.35	U : 0.14	C : 0.07	G : 0.03	u : 0.03	

#score	2100.678571428572
#seq	56
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_UTR_m1_run2.nuc.txt

#NT
aaaaaaaaaaaa	chr15:49032587-49032892(-)$1	305	52	64	24.2352
AAAAAUAAAAAU	chr19:1270712-1271009(+)$1	297	90	102	24.8235
aaaaauaaaaau	chr5:110833265-110833565(-)$1	300	224	236	24.8235
aaauaaauaaau	chr7:44048987-44049274(-)$1	287	46	58	22.7647
aaaaauaaaaau	chr17:45699296-45699599(+)$1	303	199	211	24.8235
UAAAAAAAAAAU	chr10:35298778-35299018(-)$1	240	210	222	23.9411
aaauaaauaaau	chr7:99919236-99919519(-)$1	283	16	28	22.7647
AAAAAACAAAAA	chr9:134133373-134133620(-)$1	247	103	115	19.8235
AAAAAAAAAAAU	chr2:178087689-178087945(+)$1	256	104	116	28.0588
aaaaaaaaaaaU	chr8:23429670-23429910(+)$1	240	80	92	28.0588
AAAGAAAGAAAU	chr1:241793093-241793333(-)$1	240	219	231	21.5882
aaaaaaaaaaau	chr19:39220689-39220942(+)$1	253	84	96	28.0588
AAUAAAAUACAU	chr1:241796403-241796645(-)$1	242	74	86	19.3823
AAAGAAAGAAAU	chr15:34817437-34817732(-)$1	295	33	45	21.5882
aaaaauaaaaaU	chr22:19428900-19429140(-)$1	240	85	97	24.8235
aaauaaauaaau	chr1:155885120-155885359(-)$1	239	45	57	22.7647
aaaaauaaaaau	chr17:45699405-45699687(+)$1	282	90	102	24.8235
uaaaaaauaaau	chr6:7283182-7283409(-)$1	227	119	131	22.0294
AAGAAAAUAAAU	chr5:86687606-86687879(-)$1	273	93	105	23.2058
aauaaaauaaau	chr15:83697324-83697635(-)$1	311	3	15	23.7941
aaaaaaaaaaaU	chr17:57281187-57281416(+)$1	229	15	27	28.0588
AAGAAAAAUAAU	chr9:114985260-114985487(-)$1	227	178	190	20.7058
aaauaaauaaau	chr1:155885159-155885383(-)$1	224	69	81	22.7647
UAAAAAAAAACU	chr4:95585567-95585840(+)$1	273	74	86	19.2352
AAUGAAAAAAAU	chr17:29109685-29109965(+)$1	280	240	252	22.1764
AACAAAUAAAAU	chr20:57486083-57486332(+)$1	249	69	81	20.5588
aagauaaaaaau	chr1:21102001-21102260(-)$1	259	97	109	20.4117
AAUAAAAAAAAG	chr19:1434988-1435205(+)$1	217	121	133	22.0294
AAAAAAUAAAAU	chr7:66420998-66421301(+)$1	303	112	124	23.7941
AAUAAAAAAAAG	chr19:1435005-1435225(+)$1	220	104	116	22.0294
AAUAAAAUACAU	chr1:241796464-241796727(-)$1	263	156	168	19.3823
AAAAAUAAUAAU	chr21:38471281-38471593(+)$1	312	258	270	20.4117
AAAAAAACAAAC	chr9:95297999-95298333(+)$1	334	60	72	21.0000

#otherMatches

#Struct PSSM
9999999ggggg	chr19:1435025-1435237(+)$1	212	84	96	22.0294
::::::::::::	chr15:49032587-49032892(-)$1	305	52	64	24.2352
eeee[bbooooo	chr19:1270712-1271009(+)$1	297	90	102	24.8235
^^^^^^^^^^^^	chr5:110833265-110833565(-)$1	300	224	236	24.8235
gggggqqqqqqq	chr7:44048987-44049274(-)$1	287	46	58	22.7647
::::::::::dd	chr17:45699296-45699599(+)$1	303	199	211	24.8235
::IIIIIIIII}	chr10:35298778-35299018(-)$1	240	210	222	23.9411
iiiii'''''''	chr7:99919236-99919519(-)$1	283	16	28	22.7647
leeeee]fffff	chr9:134133373-134133620(-)$1	247	103	115	19.8235
rrrrrccc22dd	chr2:178087689-178087945(+)$1	256	104	116	28.0588
:::::::::::e	chr8:23429670-23429910(+)$1	240	80	92	28.0588
^^^^^^^^^^^g	chr1:241793093-241793333(-)$1	240	219	231	21.5882
::::::::::::	chr19:39220689-39220942(+)$1	253	84	96	28.0588
888888======	chr1:241796403-241796645(-)$1	242	74	86	19.3823
ccc[dddd%%%%	chr15:34817437-34817732(-)$1	295	33	45	21.5882
pppppppfffff	chr22:19428900-19429140(-)$1	240	85	97	24.8235
::::::::::::	chr1:155885120-155885359(-)$1	239	45	57	22.7647
::::::::::dd	chr17:45699405-45699687(+)$1	282	90	102	24.8235
::::::::::::	chr6:7283182-7283409(-)$1	227	119	131	22.0294
ccc####cccnn	chr5:86687606-86687879(-)$1	273	93	105	23.2058
c[iiiiiiiii%	chr15:83697324-83697635(-)$1	311	3	15	23.7941
::::::::::::	chr17:57281187-57281416(+)$1	229	15	27	28.0588
nnnneeeee:::	chr9:114985260-114985487(-)$1	227	178	190	20.7058
::::::::::::	chr1:155885159-155885383(-)$1	224	69	81	22.7647
&&&&&ggggggg	chr4:95585567-95585840(+)$1	273	74	86	19.2352
::ddddqqqqqq	chr17:29109685-29109965(+)$1	280	240	252	22.1764
cdddd^^^^^^^	chr20:57486083-57486332(+)$1	249	69	81	20.5588
fff&&&&&&&ff	chr1:21102001-21102260(-)$1	259	97	109	20.4117
:::::::::eee	chr19:1434988-1435205(+)$1	217	121	133	22.0294
ggggg:ffffff	chr7:66420998-66421301(+)$1	303	112	124	23.7941
:::::::::eee	chr19:1435005-1435225(+)$1	220	104	116	22.0294
mccc55555ggg	chr1:241796464-241796727(-)$1	263	156	168	19.3823
dd^^^^^^^^^^	chr21:38471281-38471593(+)$1	312	258	270	20.4117
yyyyyyyyyyyy	chr9:95297999-95298333(+)$1	334	60	72	21.0000

#DB
.......)))))	chr19:1435025-1435237(+)$1	1	84	96	22.0294
............	chr15:49032587-49032892(-)$1	1	52	64	24.2352
((((.((.....	chr19:1270712-1271009(+)$1	1	90	102	24.8235
............	chr5:110833265-110833565(-)$1	1	224	236	24.8235
(((((.......	chr7:44048987-44049274(-)$1	1	46	58	22.7647
..........((	chr17:45699296-45699599(+)$1	1	199	211	24.8235
..))))))))).	chr10:35298778-35299018(-)$1	1	210	222	23.9411
(((((.......	chr7:99919236-99919519(-)$1	1	16	28	22.7647
.))))).)))))	chr9:134133373-134133620(-)$1	1	103	115	19.8235
.....)))..))	chr2:178087689-178087945(+)$1	1	104	116	28.0588
...........(	chr8:23429670-23429910(+)$1	1	80	92	28.0588
...........)	chr1:241793093-241793333(-)$1	1	219	231	21.5882
............	chr19:39220689-39220942(+)$1	1	84	96	28.0588
......))))))	chr1:241796403-241796645(-)$1	1	74	86	19.3823
(((.((((....	chr15:34817437-34817732(-)$1	1	33	45	21.5882
.......)))))	chr22:19428900-19429140(-)$1	1	85	97	24.8235
............	chr1:155885120-155885359(-)$1	1	45	57	22.7647
..........((	chr17:45699405-45699687(+)$1	1	90	102	24.8235
............	chr6:7283182-7283409(-)$1	1	119	131	22.0294
(((....(((..	chr5:86687606-86687879(-)$1	1	93	105	23.2058
(.(((((((((.	chr15:83697324-83697635(-)$1	1	3	15	23.7941
............	chr17:57281187-57281416(+)$1	1	15	27	28.0588
....)))))...	chr9:114985260-114985487(-)$1	1	178	190	20.7058
............	chr1:155885159-155885383(-)$1	1	69	81	22.7647
.....(((((((	chr4:95585567-95585840(+)$1	1	74	86	19.2352
..((((......	chr17:29109685-29109965(+)$1	1	240	252	22.1764
(((((.......	chr20:57486083-57486332(+)$1	1	69	81	20.5588
(((.......((	chr1:21102001-21102260(-)$1	1	97	109	20.4117
.........(((	chr19:1434988-1435205(+)$1	1	121	133	22.0294
))))).((((((	chr7:66420998-66421301(+)$1	1	112	124	23.7941
.........(((	chr19:1435005-1435225(+)$1	1	104	116	22.0294
.))).....)))	chr1:241796464-241796727(-)$1	1	156	168	19.3823
((..........	chr21:38471281-38471593(+)$1	1	258	270	20.4117
............	chr9:95297999-95298333(+)$1	1	60	72	21.0000

#PSSM
A : 0.50	a : 0.41	U : 0.05	u : 0.02	
A : 0.55	a : 0.44	
a : 0.38	A : 0.29	U : 0.17	G : 0.05	u : 0.02	C : 0.02	g : 0.02	
A : 0.47	a : 0.32	u : 0.11	G : 0.08	
A : 0.55	a : 0.41	u : 0.02	
A : 0.50	a : 0.32	u : 0.11	U : 0.05	
A : 0.47	a : 0.44	U : 0.05	C : 0.02	
A : 0.38	a : 0.26	u : 0.17	U : 0.08	G : 0.05	C : 0.02	
A : 0.50	a : 0.44	U : 0.05	
A : 0.50	a : 0.44	C : 0.05	
A : 0.52	a : 0.44	C : 0.02	
U : 0.50	u : 0.32	G : 0.08	a : 0.02	A : 0.02	C : 0.02	

#score	780.7647058823532
#seq	34
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_transcript_m2_run2.nuc.txt

#NT
ggggcaggg	chr2:97535518-97535839(-)$1	321	156	165	18.8965
GGGGCCCGG	chr1:22379336-22379654(+)$1	318	8	17	18.6379
GGCGCCGGG	chr8:101963922-101964247(-)$1	325	201	210	19.1551
GAGGCCGGG	chr2:97535358-97535649(-)$1	291	43	52	18.9827
GAGGCCGGG	chr10:28822885-28823149(+)$1	264	87	96	18.9827
GGGGCUGGG	chr2:61764251-61764529(-)$1	278	156	165	19.0689
ggggccggg	chr21:44395129-44395449(+)$1	320	98	107	22.8620
GGGGCCGGG	chr12:133404791-133405041(-)$1	250	109	118	22.8620
GGGGCAGGG	chr16:2818217-2818481(+)$1	264	195	204	18.8965
UGGGCCGGG	chr14:102228484-102228736(+)$1	252	23	32	18.2931
GUGGCCGGG	chr19:798609-798885(+)$1	276	94	103	18.7241
GGGGCCGGC	chr12:133148188-133148481(+)$1	293	31	40	18.3793
gcggccggg	chr19:56632149-56632482(-)$1	333	97	106	18.9827
cgggccggg	chr9:140513676-140513933(+)$1	257	50	59	18.4655
GCGGCCGGG	chr6:64282663-64283016(+)$1	353	261	270	18.9827
GGGGCCGAG	chr1:27022957-27023194(+)$1	237	162	171	18.5517
GGGGCCUGG	chr6:7109133-7109424(+)$1	291	0	9	18.5517
gcggccggg	chr16:67596617-67596916(-)$1	299	106	115	18.9827
GGCGCCGGG	chr15:91415223-91415476(+)$1	253	24	33	19.1551
GGGGCUGGG	chr6:31371405-31371700(+)$1	295	6	15	19.0689
ggggccggg	chr7:856338-856598(+)$1	260	47	56	22.8620
GGCGCCGGG	chr11:70117017-70117307(+)$1	290	139	148	19.1551
ggggccggg	chr9:139560315-139560577(+)$1	262	104	113	22.8620
ggggccggg	chr11:116968845-116969119(-)$1	274	27	36	22.8620
ggcgccggg	chr12:31476906-31477156(-)$1	250	32	41	19.1551
ggggccugg	chr17:76164875-76165210(+)$1	335	29	38	18.5517
GGGGCCGGG	chr1:203764844-203765187(+)$1	343	114	123	22.8620
GGCGCCGGG	chr6:159240058-159240301(-)$1	243	143	152	19.1551
ggggccggc	chr9:96928778-96929066(+)$1	288	59	68	18.3793
GGGGCCGUG	chr10:43903686-43903924(-)$1	238	14	23	18.3793
GGGCCCGGG	chr7:150777586-150777892(-)$1	306	105	114	18.2931
gggggcggg	chr14:55738280-55738551(+)$1	271	104	113	18.0344
GAGGCCGGG	chr16:88520229-88520493(+)$1	264	88	97	18.9827
ggggccggg	chr19:39833113-39833384(+)$1	271	256	265	22.8620
GGGGCGGGG	chr1:26799444-26799670(+)$1	226	87	96	18.7241
GGGGCCGGG	chr10:23002705-23002954(-)$1	249	223	232	22.8620
GGGGCUGGG	chr6:20403365-20403623(+)$1	258	60	69	19.0689
ggggccggg	chr17:80052799-80053045(-)$1	246	112	121	22.8620
GGGGCCAGG	chr2:28975097-28975392(+)$1	295	183	192	18.4655
GGGGCUGGG	chr19:39880696-39880991(-)$1	295	131	140	19.0689
GGGGCCGAG	chr22:29612901-29613156(+)$1	255	96	105	18.5517
ggggccggg	chr9:140484394-140484698(-)$1	304	89	98	22.8620
ggcgccggg	chr12:31476958-31477215(-)$1	257	91	100	19.1551
GGGGCCGAG	chr1:228330355-228330582(+)$1	227	149	158	18.5517
ggggcccgg	chr15:91414770-91415032(+)$1	262	82	91	18.6379
GGGUCCGGG	chr8:52811346-52811688(-)$1	342	71	80	18.2068
GGGGCCCGG	chr1:207494929-207495405(+)$1	476	288	297	18.6379
GGCGCCGGG	chr11:70117107-70117376(+)$1	269	49	58	19.1551
GCGGCCGGG	chr8:103666500-103666761(-)$1	261	2	11	18.9827
GGAGCCGGG	chr17:80050578-80050848(-)$1	270	116	125	18.6379
CGGGCCGGG	chr5:134734474-134734758(-)$1	284	110	119	18.4655
GGGGCAGGG	chr21:33103713-33104004(-)$1	291	42	51	18.8965
cgggccggg	chr2:208395171-208395466(+)$1	295	45	54	18.4655
GGGGCUGGG	chr17:79880995-79881238(-)$1	243	16	25	19.0689
GGGGCCGGC	chr12:112036309-112036586(-)$1	277	108	117	18.3793
gggcccggg	chr19:2270795-2271071(+)$1	276	79	88	18.2931
GGGGCCGCG	chr12:46765906-46766203(-)$1	297	122	131	18.3793

#otherMatches

#Struct PSSM
!!a[ccc[c	chr1:244614513-244614811(-)$1	298	190	199	18.9827
mmmbb:EEE	chr2:97535518-97535839(-)$1	321	156	165	18.8965
IIIIIIIIB	chr1:22379336-22379654(+)$1	318	8	17	18.6379
DDDD}EEEE	chr8:101963922-101964247(-)$1	325	201	210	19.1551
qqqqqqqqf	chr2:97535358-97535649(-)$1	291	43	52	18.9827
:EEEEEKKA	chr10:28822885-28823149(+)$1	264	87	96	18.9827
l========	chr2:61764251-61764529(-)$1	278	156	165	19.0689
qqqdddd::	chr21:44395129-44395449(+)$1	320	98	107	22.8620
MMA{EEEEE	chr12:133404791-133405041(-)$1	250	109	118	22.8620
EZZZDDDDY	chr16:2818217-2818481(+)$1	264	195	204	18.8965
bb[cccppp	chr14:102228484-102228736(+)$1	252	23	32	18.2931
uuuuddddc	chr19:798609-798885(+)$1	276	94	103	18.7241
JJJJJCCC{	chr12:133148188-133148481(+)$1	293	31	40	18.3793
cc]cccbb[	chr19:56632149-56632482(-)$1	333	97	106	18.9827
fffff[aii	chr9:140513676-140513933(+)$1	257	50	59	18.4655
f[hhhhhhh	chr6:64282663-64283016(+)$1	353	261	270	18.9827
cc22dddd:	chr1:27022957-27023194(+)$1	237	162	171	18.5517
iiiiiiiii	chr6:7109133-7109424(+)$1	291	0	9	18.5517
ggggggg[d	chr16:67596617-67596916(-)$1	299	106	115	18.9827
DDDCCC{BB	chr15:91415223-91415476(+)$1	253	24	33	19.1551
:ddddllld	chr6:31371405-31371700(+)$1	295	6	15	19.0689
!!dddd[ee	chr7:856338-856598(+)$1	260	47	56	22.8620
eeeee[bbc	chr11:70117017-70117307(+)$1	290	139	148	19.1551
4444hhhhh	chr9:139560315-139560577(+)$1	262	104	113	22.8620
BBGGGGGGG	chr11:116968845-116969119(-)$1	274	27	36	22.8620
JJJJJJJJJ	chr12:31476906-31477156(-)$1	250	32	41	19.1551
fffffdddd	chr17:76164875-76165210(+)$1	335	29	38	18.5517
EEEE:::JJ	chr1:203764844-203765187(+)$1	343	114	123	22.8620
ccc[ccc[b	chr6:159240058-159240301(-)$1	243	143	152	19.1551
GGGGG{FFF	chr9:96928778-96929066(+)$1	288	59	68	18.3793
FFFFFF:DD	chr10:43903686-43903924(-)$1	238	14	23	18.3793
:JJJJJJJJ	chr7:150777586-150777892(-)$1	306	105	114	18.2931
=========	chr14:55738280-55738551(+)$1	271	104	113	18.0344
MMMCCCccc	chr16:88520229-88520493(+)$1	264	88	97	18.9827
c22ccc:::	chr19:39833113-39833384(+)$1	271	256	265	22.8620
bbeeeee33	chr1:26799444-26799670(+)$1	226	87	96	18.7241
IIIIIAbb"	chr10:23002705-23002954(-)$1	249	223	232	22.8620
a22hhhhhh	chr6:20403365-20403623(+)$1	258	60	69	19.0689
dddd!!fff	chr17:80052799-80053045(-)$1	246	112	121	22.8620
ffffff:ff	chr2:28975097-28975392(+)$1	295	183	192	18.4655
======HHH	chr19:39880696-39880991(-)$1	295	131	140	19.0689
b"""bb###	chr22:29612901-29613156(+)$1	255	96	105	18.5517
c[eeeeemm	chr9:140484394-140484698(-)$1	304	89	98	22.8620
:gggggggo	chr12:31476958-31477215(-)$1	257	91	100	19.1551
h22ccc::B	chr1:228330355-228330582(+)$1	227	149	158	18.5517
nnndddd33	chr15:91414770-91415032(+)$1	262	82	91	18.6379
ffffff:gg	chr8:52811346-52811688(-)$1	342	71	80	18.2068
~A}JJJJJJ	chr1:207494929-207495405(+)$1	476	288	297	18.6379
eeeee[bbc	chr11:70117107-70117376(+)$1	269	49	58	19.1551
CCCDDDDbb	chr8:103666500-103666761(-)$1	261	2	11	18.9827
a!!ccca[b	chr17:80050578-80050848(-)$1	270	116	125	18.6379
ff]gggggg	chr5:134734474-134734758(-)$1	284	110	119	18.4655
EEEEEGGGG	chr21:33103713-33104004(-)$1	291	42	51	18.8965
JJJJJJJJJ	chr2:208395171-208395466(+)$1	295	45	54	18.4655
LLLCCC{A{	chr17:79880995-79881238(-)$1	243	16	25	19.0689
c]cccccc3	chr12:112036309-112036586(-)$1	277	108	117	18.3793
EEEEEKKGG	chr19:2270795-2271071(+)$1	276	79	88	18.2931
mmmccc22h	chr12:46765906-46766203(-)$1	297	122	131	18.3793

#DB
..(.(((.(	chr1:244614513-244614811(-)$1	1	190	199	18.9827
...)).(((	chr2:97535518-97535839(-)$1	1	156	165	18.8965
(((((((((	chr1:22379336-22379654(+)$1	1	8	17	18.6379
)))).))))	chr8:101963922-101964247(-)$1	1	201	210	19.1551
........)	chr2:97535358-97535649(-)$1	1	43	52	18.9827
.(((((..(	chr10:28822885-28823149(+)$1	1	87	96	18.9827
.))))))))	chr2:61764251-61764529(-)$1	1	156	165	19.0689
...))))..	chr21:44395129-44395449(+)$1	1	98	107	22.8620
..(.(((((	chr12:133404791-133405041(-)$1	1	109	118	22.8620
)...)))).	chr16:2818217-2818481(+)$1	1	195	204	18.8965
((.(((...	chr14:102228484-102228736(+)$1	1	23	32	18.2931
....)))))	chr19:798609-798885(+)$1	1	94	103	18.7241
((((((((.	chr12:133148188-133148481(+)$1	1	31	40	18.3793
)).)))((.	chr19:56632149-56632482(-)$1	1	97	106	18.9827
(((((.(((	chr9:140513676-140513933(+)$1	1	50	59	18.4655
(.(((((((	chr6:64282663-64283016(+)$1	1	261	270	18.9827
))..)))).	chr1:27022957-27023194(+)$1	1	162	171	18.5517
(((((((((	chr6:7109133-7109424(+)$1	1	0	9	18.5517
(((((((.(	chr16:67596617-67596916(-)$1	1	106	115	18.9827
((((((.((	chr15:91415223-91415476(+)$1	1	24	33	19.1551
.((((...)	chr6:31371405-31371700(+)$1	1	6	15	19.0689
..((((.((	chr7:856338-856598(+)$1	1	47	56	22.8620
(((((.(((	chr11:70117017-70117307(+)$1	1	139	148	19.1551
....)))))	chr9:139560315-139560577(+)$1	1	104	113	22.8620
(((((((((	chr11:116968845-116969119(-)$1	1	27	36	22.8620
(((((((((	chr12:31476906-31477156(-)$1	1	32	41	19.1551
(((((((((	chr17:76164875-76165210(+)$1	1	29	38	18.5517
((((...((	chr1:203764844-203765187(+)$1	1	114	123	22.8620
(((.(((.(	chr6:159240058-159240301(-)$1	1	143	152	19.1551
(((((.(((	chr9:96928778-96929066(+)$1	1	59	68	18.3793
((((((.((	chr10:43903686-43903924(-)$1	1	14	23	18.3793
.((((((((	chr7:150777586-150777892(-)$1	1	105	114	18.2931
)))))))))	chr14:55738280-55738551(+)$1	1	104	113	18.0344
...((((((	chr16:88520229-88520493(+)$1	1	88	97	18.9827
)..)))...	chr19:39833113-39833384(+)$1	1	256	265	22.8620
)))))))..	chr1:26799444-26799670(+)$1	1	87	96	18.7241
))))))((.	chr10:23002705-23002954(-)$1	1	223	232	22.8620
)..))))))	chr6:20403365-20403623(+)$1	1	60	69	19.0689
((((..(((	chr17:80052799-80053045(-)$1	1	112	121	22.8620
)))))).((	chr2:28975097-28975392(+)$1	1	183	192	18.4655
)))))))))	chr19:39880696-39880991(-)$1	1	131	140	19.0689
(...((...	chr22:29612901-29613156(+)$1	1	96	105	18.5517
(.(((((..	chr9:140484394-140484698(-)$1	1	89	98	22.8620
.(((((((.	chr12:31476958-31477215(-)$1	1	91	100	19.1551
)..)))..)	chr1:228330355-228330582(+)$1	1	149	158	18.5517
...))))..	chr15:91414770-91415032(+)$1	1	82	91	18.6379
)))))).((	chr8:52811346-52811688(-)$1	1	71	80	18.2068
.).))))))	chr1:207494929-207495405(+)$1	1	288	297	18.6379
(((((.(((	chr11:70117107-70117376(+)$1	1	49	58	19.1551
(((((((((	chr8:103666500-103666761(-)$1	1	2	11	18.9827
(..((((.(	chr17:80050578-80050848(-)$1	1	116	125	18.6379
)).))))))	chr5:134734474-134734758(-)$1	1	110	119	18.4655
(((((((((	chr21:33103713-33104004(-)$1	1	42	51	18.8965
(((((((((	chr2:208395171-208395466(+)$1	1	45	54	18.4655
...(((.(.	chr17:79880995-79881238(-)$1	1	16	25	19.0689
).)))))).	chr12:112036309-112036586(-)$1	1	108	117	18.3793
(((((..((	chr19:2270795-2271071(+)$1	1	79	88	18.2931
...)))..)	chr12:46765906-46766203(-)$1	1	122	131	18.3793

#PSSM
G : 0.63	g : 0.29	c : 0.03	U : 0.01	C : 0.01	
G : 0.55	g : 0.29	A : 0.06	c : 0.03	C : 0.03	U : 0.01	
G : 0.56	g : 0.29	C : 0.08	c : 0.03	A : 0.01	
G : 0.63	g : 0.31	C : 0.01	U : 0.01	c : 0.01	
C : 0.67	c : 0.31	g : 0.01	
C : 0.53	c : 0.31	U : 0.08	A : 0.03	a : 0.01	G : 0.01	
G : 0.60	g : 0.29	C : 0.03	U : 0.01	u : 0.01	A : 0.01	c : 0.01	
G : 0.58	g : 0.32	A : 0.05	U : 0.01	C : 0.01	
G : 0.63	g : 0.31	C : 0.03	c : 0.01	

#score	1128.2413793103449
#seq	58
#width	9
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_UTR_m3_run1.nuc.txt

#NT
UGUUUU	chr6:53132880-53133132(-)$1	252	18	24	13.5555
UGUUUU	chr17:28793208-28793492(+)$1	284	14	20	13.5555
UUUUUU	chr5:41918206-41918465(+)$1	259	208	214	16.1481
UUUUUU	chr5:71504465-71504741(+)$1	276	254	260	16.1481
uuuuuu	chr5:53181899-53182195(-)$1	296	278	284	16.1481
UUUUUU	chr18:19445626-19445911(+)$1	285	79	85	16.1481
UUUUUU	chr16:21666826-21667129(+)$1	303	201	207	16.1481
UCUUUU	chr14:24908949-24909243(-)$1	294	144	150	13.8333
UAUUUU	chr2:178405379-178405644(+)$1	265	18	24	13.4629
UUUUUU	chr2:216226109-216226376(-)$1	267	0	6	16.1481
UCUUUU	chr2:55199940-55200148(-)$1	208	92	98	13.8333
uuuuuu	chr8:17928706-17928966(-)$1	260	198	204	16.1481
UUUUUU	chr5:71504551-71504795(+)$1	244	168	174	16.1481
UGUUUU	chr8:17087545-17087850(-)$1	305	78	84	13.5555
UGUUUU	chr3:194125979-194126232(-)$1	253	64	70	13.5555
UAUUUU	chr21:30718173-30718441(+)$1	268	135	141	13.4629
UUUUUU	chr2:109302053-109302309(+)$1	256	0	6	16.1481
UUUUUU	chr1:223962489-223962876(+)$1	387	24	30	16.1481
UUUUUU	chr17:57771274-57771538(+)$1	264	179	185	16.1481
UAUUUU	chr21:46269751-46269996(-)$1	245	144	150	13.4629
UGUUUU	chr2:27002022-27002296(+)$1	274	88	94	13.5555
UUUUUU	chr1:205684505-205684737(-)$1	232	0	6	16.1481
UUUUUU	chr14:31371640-31371938(-)$1	298	178	184	16.1481
UUUUUU	chr1:202910095-202910342(-)$1	247	221	227	16.1481
UCUUUU	chr14:100744086-100744370(+)$1	284	175	181	13.8333
UCUUUU	chr6:10731097-10731349(+)$1	252	46	52	13.8333
UCUUUU	chrX:154006987-154007286(-)$1	299	196	202	13.8333
UCUUUU	chr5:150648613-150648870(+)$1	257	172	178	13.8333
UUUUUU	chr1:228285810-228286046(+)$1	236	135	141	16.1481
UAUUUU	chr22:22117230-22117482(-)$1	252	169	175	13.4629
UUUUUU	chr21:34930554-34930898(+)$1	344	274	280	16.1481
UUUUUU	chr1:115292358-115292630(-)$1	272	89	95	16.1481
ucuuuu	chr4:57326655-57326885(+)$1	230	50	56	13.8333
UUUUUU	chr10:28909108-28909370(+)$1	262	36	42	16.1481
UUUUUU	chr1:67724119-67724424(+)$1	305	29	35	16.1481
UUUUUU	chr1:193060216-193060468(+)$1	252	72	78	16.1481
UUUUUU	chr4:83739855-83740124(-)$1	269	182	188	16.1481
UUUUUU	chr1:144902526-144902810(-)$1	284	209	215	16.1481
uuuuuu	chr6:7287906-7288167(-)$1	261	0	6	16.1481
UUUUUU	chr5:10433701-10433934(+)$1	233	136	142	16.1481
UUUUUU	chr16:58196893-58197148(-)$1	255	153	159	16.1481
UCUUUU	chr2:74383460-74383785(-)$1	325	4	10	13.8333
UUUUUU	chr1:87570576-87570900(+)$1	324	145	151	16.1481
UAUUUU	chr6:135524260-135524563(+)$1	303	224	230	13.4629
UUUUUU	chr7:157209266-157209526(+)$1	260	167	173	16.1481
UUUUUU	chr11:59837895-59838167(+)$1	272	182	188	16.1481
UUUUUU	chr8:99054771-99054986(-)$1	215	138	144	16.1481
UUUUUU	chr17:30552112-30552425(+)$1	313	159	165	16.1481
UGUUUU	chr2:55199424-55199677(-)$1	253	80	86	13.5555
UUUUUU	chr1:95659445-95659722(+)$1	277	78	84	16.1481
UUUUUU	chr10:75135199-75135508(-)$1	309	244	250	16.1481
UUUUUU	chr6:139693828-139694093(-)$1	265	0	6	16.1481
UCUUUU	chr10:75157974-75158214(-)$1	240	89	95	13.8333

#otherMatches

#Struct PSSM
::::::	chr10:96372710-96373080(+)$1	370	344	350	16.1481
dddmmm	chr6:53132880-53133132(-)$1	252	18	24	13.5555
JJJ:::	chr17:28793208-28793492(+)$1	284	14	20	13.5555
e:::::	chr5:41918206-41918465(+)$1	259	208	214	16.1481
::::::	chr5:71504465-71504741(+)$1	276	254	260	16.1481
::::::	chr5:53181899-53182195(-)$1	296	278	284	16.1481
nnnnn=	chr18:19445626-19445911(+)$1	285	79	85	16.1481
mggggg	chr16:21666826-21667129(+)$1	303	201	207	16.1481
ffff!!	chr14:24908949-24909243(-)$1	294	144	150	13.8333
::::::	chr2:178405379-178405644(+)$1	265	18	24	13.4629
::::::	chr2:216226109-216226376(-)$1	267	0	6	16.1481
::::::	chr2:55199940-55200148(-)$1	208	92	98	13.8333
::::::	chr8:17928706-17928966(-)$1	260	198	204	16.1481
ggggg6	chr5:71504551-71504795(+)$1	244	168	174	16.1481
::::::	chr8:17087545-17087850(-)$1	305	78	84	13.5555
2ccc22	chr3:194125979-194126232(-)$1	253	64	70	13.5555
GGGGGG	chr21:30718173-30718441(+)$1	268	135	141	13.4629
::::GG	chr2:109302053-109302309(+)$1	256	0	6	16.1481
HHHHHH	chr1:223962489-223962876(+)$1	387	24	30	16.1481
d]iiii	chr17:57771274-57771538(+)$1	264	179	185	16.1481
::::::	chr21:46269751-46269996(-)$1	245	144	150	13.4629
ee::::	chr2:27002022-27002296(+)$1	274	88	94	13.5555
::GGGG	chr1:205684505-205684737(-)$1	232	0	6	16.1481
::::::	chr14:31371640-31371938(-)$1	298	178	184	16.1481
::::::	chr1:202910095-202910342(-)$1	247	221	227	16.1481
||||||	chr14:100744086-100744370(+)$1	284	175	181	13.8333
KCCCKK	chr6:10731097-10731349(+)$1	252	46	52	13.8333
:::::i	chrX:154006987-154007286(-)$1	299	196	202	13.8333
mmmmdd	chr5:150648613-150648870(+)$1	257	172	178	13.8333
hhhhhh	chr1:228285810-228286046(+)$1	236	135	141	16.1481
::::::	chr22:22117230-22117482(-)$1	252	169	175	13.4629
""gggg	chr21:34930554-34930898(+)$1	344	274	280	16.1481
======	chr1:115292358-115292630(-)$1	272	89	95	16.1481
oooddd	chr4:57326655-57326885(+)$1	230	50	56	13.8333
3dddd2	chr10:28909108-28909370(+)$1	262	36	42	16.1481
GGGGEE	chr1:67724119-67724424(+)$1	305	29	35	16.1481
qeeeee	chr1:193060216-193060468(+)$1	252	72	78	16.1481
f22ddd	chr4:83739855-83740124(-)$1	269	182	188	16.1481
55555c	chr1:144902526-144902810(-)$1	284	209	215	16.1481
:::DDD	chr6:7287906-7288167(-)$1	261	0	6	16.1481
qqqqqq	chr5:10433701-10433934(+)$1	233	136	142	16.1481
eeeeel	chr16:58196893-58197148(-)$1	255	153	159	16.1481
::::::	chr2:74383460-74383785(-)$1	325	4	10	13.8333
bb!!dd	chr1:87570576-87570900(+)$1	324	145	151	16.1481
ee::::	chr6:135524260-135524563(+)$1	303	224	230	13.4629
hhh555	chr7:157209266-157209526(+)$1	260	167	173	16.1481
^^^^^^	chr11:59837895-59838167(+)$1	272	182	188	16.1481
qqqqqq	chr8:99054771-99054986(-)$1	215	138	144	16.1481
rrrrrr	chr17:30552112-30552425(+)$1	313	159	165	16.1481
ccceee	chr2:55199424-55199677(-)$1	253	80	86	13.5555
nnnddd	chr1:95659445-95659722(+)$1	277	78	84	16.1481
xxxddd	chr10:75135199-75135508(-)$1	309	244	250	16.1481
::::::	chr6:139693828-139694093(-)$1	265	0	6	16.1481
OOOOOC	chr10:75157974-75158214(-)$1	240	89	95	13.8333

#DB
......	chr10:96372710-96373080(+)$1	1	344	350	16.1481
(((...	chr6:53132880-53133132(-)$1	1	18	24	13.5555
(((...	chr17:28793208-28793492(+)$1	1	14	20	13.5555
).....	chr5:41918206-41918465(+)$1	1	208	214	16.1481
......	chr5:71504465-71504741(+)$1	1	254	260	16.1481
......	chr5:53181899-53182195(-)$1	1	278	284	16.1481
.....)	chr18:19445626-19445911(+)$1	1	79	85	16.1481
.)))))	chr16:21666826-21667129(+)$1	1	201	207	16.1481
((((..	chr14:24908949-24909243(-)$1	1	144	150	13.8333
......	chr2:178405379-178405644(+)$1	1	18	24	13.4629
......	chr2:216226109-216226376(-)$1	1	0	6	16.1481
......	chr2:55199940-55200148(-)$1	1	92	98	13.8333
......	chr8:17928706-17928966(-)$1	1	198	204	16.1481
))))).	chr5:71504551-71504795(+)$1	1	168	174	16.1481
......	chr8:17087545-17087850(-)$1	1	78	84	13.5555
.)))..	chr3:194125979-194126232(-)$1	1	64	70	13.5555
((((((	chr21:30718173-30718441(+)$1	1	135	141	13.4629
....((	chr2:109302053-109302309(+)$1	1	0	6	16.1481
((((((	chr1:223962489-223962876(+)$1	1	24	30	16.1481
).))))	chr17:57771274-57771538(+)$1	1	179	185	16.1481
......	chr21:46269751-46269996(-)$1	1	144	150	13.4629
))....	chr2:27002022-27002296(+)$1	1	88	94	13.5555
..((((	chr1:205684505-205684737(-)$1	1	0	6	16.1481
......	chr14:31371640-31371938(-)$1	1	178	184	16.1481
......	chr1:202910095-202910342(-)$1	1	221	227	16.1481
......	chr14:100744086-100744370(+)$1	1	175	181	13.8333
.(((..	chr6:10731097-10731349(+)$1	1	46	52	13.8333
.....(	chrX:154006987-154007286(-)$1	1	196	202	13.8333
....))	chr5:150648613-150648870(+)$1	1	172	178	13.8333
((((((	chr1:228285810-228286046(+)$1	1	135	141	16.1481
......	chr22:22117230-22117482(-)$1	1	169	175	13.4629
..((((	chr21:34930554-34930898(+)$1	1	274	280	16.1481
((((((	chr1:115292358-115292630(-)$1	1	89	95	16.1481
...)))	chr4:57326655-57326885(+)$1	1	50	56	13.8333
.)))).	chr10:28909108-28909370(+)$1	1	36	42	16.1481
((((((	chr1:67724119-67724424(+)$1	1	29	35	16.1481
.)))))	chr1:193060216-193060468(+)$1	1	72	78	16.1481
)..)))	chr4:83739855-83740124(-)$1	1	182	188	16.1481
.....)	chr1:144902526-144902810(-)$1	1	209	215	16.1481
...(((	chr6:7287906-7288167(-)$1	1	0	6	16.1481
......	chr5:10433701-10433934(+)$1	1	136	142	16.1481
(((((.	chr16:58196893-58197148(-)$1	1	153	159	16.1481
......	chr2:74383460-74383785(-)$1	1	4	10	13.8333
((..((	chr1:87570576-87570900(+)$1	1	145	151	16.1481
))....	chr6:135524260-135524563(+)$1	1	224	230	13.4629
)))...	chr7:157209266-157209526(+)$1	1	167	173	16.1481
......	chr11:59837895-59838167(+)$1	1	182	188	16.1481
......	chr8:99054771-99054986(-)$1	1	138	144	16.1481
......	chr17:30552112-30552425(+)$1	1	159	165	16.1481
((((((	chr2:55199424-55199677(-)$1	1	80	86	13.5555
...)))	chr1:95659445-95659722(+)$1	1	78	84	16.1481
...)))	chr10:75135199-75135508(-)$1	1	244	250	16.1481
......	chr6:139693828-139694093(-)$1	1	0	6	16.1481
.....(	chr10:75157974-75158214(-)$1	1	89	95	13.8333

#PSSM
U : 0.90	u : 0.09	
U : 0.55	C : 0.14	G : 0.11	A : 0.09	u : 0.07	c : 0.01	
U : 0.90	u : 0.09	
U : 0.90	u : 0.09	
U : 0.90	u : 0.09	
U : 0.90	u : 0.09	

#score	822.1851851851849
#seq	54
#width	6
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_CDS_m3_run1.nuc.txt

#NT
GAG	chr17:39975427-39975697(+)$1	270	117	120	8.9999
GAG	chr17:79969318-79969551(+)$1	233	12	15	8.9999
GAG	chr2:70457789-70458095(-)$1	306	139	142	8.9999
GAG	chr3:49051298-49051599(+)$1	301	96	99	8.9999
GAG	chr16:8891663-8891920(+)$1	257	26	29	8.9999
GAG	chr14:70235844-70236083(+)$1	239	94	97	8.9999
gag	chr12:104341060-104341309(+)$1	249	37	40	8.9999
GAG	chr12:104332088-104332337(+)$1	249	41	44	8.9999
GAG	chr20:4843382-4843647(-)$1	265	53	56	8.9999
GAG	chr22:46751244-46751589(+)$1	345	36	39	8.9999
GAG	chr6:144837848-144838123(+)$1	275	30	33	8.9999
GAG	chr2:65658939-65659294(-)$1	355	86	89	8.9999
GAG	chr17:45755339-45755557(+)$1	218	75	78	8.9999
GAG	chr6:158475895-158476166(+)$1	271	18	21	8.9999
GAG	chr17:73975010-73975276(-)$1	266	0	3	8.9999
GAG	chr20:39791787-39792024(+)$1	237	62	65	8.9999
GAG	chr2:27720127-27720366(+)$1	239	16	19	8.9999
GAG	chr12:100934431-100934699(+)$1	268	98	101	8.9999
GAG	chr20:61594922-61595133(+)$1	211	86	89	8.9999
gag	chr1:70687374-70687639(+)$1	265	9	12	8.9999
GAG	chr7:1024821-1025053(+)$1	232	102	105	8.9999
GAG	chr17:45755311-45755539(+)$1	228	103	106	8.9999
GAG	chr11:70644448-70644751(-)$1	303	94	97	8.9999
GAG	chr17:7530780-7531109(-)$1	329	117	120	8.9999
GAG	chr3:183882549-183882851(+)$1	302	73	76	8.9999
GAG	chr20:31608086-31608305(+)$1	219	58	61	8.9999
gag	chr17:79954214-79954484(+)$1	270	1	4	8.9999
GAG	chr11:290938-291233(+)$1	295	132	135	8.9999
GAG	chr6:158487527-158487774(+)$1	247	44	47	8.9999
GAG	chr12:132414477-132414768(+)$1	291	15	18	8.9999
GAG	chr13:107211681-107211958(-)$1	277	3	6	8.9999
GAG	chr20:39791916-39792143(+)$1	227	63	66	8.9999
GAG	chr3:149374545-149374849(-)$1	304	122	125	8.9999
GAG	chr2:63058101-63058395(+)$1	294	51	54	8.9999
gag	chr11:129991525-129991804(+)$1	279	112	115	8.9999
GAG	chr6:158480200-158480483(+)$1	283	16	19	8.9999
GAG	chr16:15127067-15127357(+)$1	290	0	3	8.9999
GAG	chr1:53370606-53370864(-)$1	258	5	8	8.9999
GAG	chr20:61594882-61595122(+)$1	240	24	27	8.9999
GAG	chr2:27448985-27449246(+)$1	261	25	28	8.9999
GAG	chr1:146684699-146684996(-)$1	297	43	46	8.9999
GAG	chr6:31914702-31914960(+)$1	258	10	13	8.9999
GAG	chr19:15763262-15763536(+)$1	274	12	15	8.9999
GAG	chr12:69218291-69218542(+)$1	251	55	58	8.9999
GAG	chr12:57499150-57499421(-)$1	271	79	82	8.9999
GAG	chr22:38902004-38902249(-)$1	245	60	63	8.9999
GAG	chr12:104341309-104341527(+)$1	218	4	7	8.9999
GAG	chr2:61697693-61697962(-)$1	269	111	114	8.9999
gag	chr2:54197690-54197988(-)$1	298	5	8	8.9999
GAG	chr1:12677133-12677386(-)$1	253	29	32	8.9999
GAG	chr2:233740584-233740872(+)$1	288	79	82	8.9999
GAG	chr14:103568401-103568671(+)$1	270	124	127	8.9999
GAG	chr6:31698535-31698810(-)$1	275	66	69	8.9999
GAG	chr6:31507998-31508221(-)$1	223	74	77	8.9999
GAG	chr2:54197788-54198046(-)$1	258	4	7	8.9999
GAG	chr21:47565277-47565533(-)$1	256	140	143	8.9999
GAG	chr11:64681220-64681494(-)$1	274	76	79	8.9999
GAG	chr19:36303178-36303469(-)$1	291	66	69	8.9999
GAG	chr10:105386791-105387023(-)$1	232	4	7	8.9999
GAG	chr17:7127062-7127296(+)$1	234	8	11	8.9999
GAG	chr14:39554916-39555182(-)$1	266	122	125	8.9999
GAG	chr20:3194531-3194794(+)$1	263	3	6	8.9999
GAG	chr6:132199584-132199855(+)$1	271	109	112	8.9999
GAG	chr3:120363105-120363354(-)$1	249	117	120	8.9999
GAG	chr20:61593940-61594182(+)$1	242	1	4	8.9999
GAG	chr9:117062804-117063053(+)$1	249	31	34	8.9999
GAG	chr14:103571245-103571495(+)$1	250	16	19	8.9999
GAG	chr16:75270541-75270835(-)$1	294	23	26	8.9999
GAG	chr19:15508480-15508732(-)$1	252	2	5	8.9999
GAG	chr14:74759762-74760043(-)$1	281	10	13	8.9999
GAG	chr4:1805370-1805601(+)$1	231	75	78	8.9999
gag	chr1:20811675-20811970(-)$1	295	63	66	8.9999
GAG	chr11:124492743-124493223(+)$1	480	44	47	8.9999
GAG	chr3:48670835-48671078(-)$1	243	13	16	8.9999
GAG	chr20:17930883-17931147(-)$1	264	107	110	8.9999
GAG	chr20:42086987-42087244(+)$1	257	26	29	8.9999
GAG	chr17:79969351-79969576(+)$1	225	34	37	8.9999

#otherMatches

#Struct PSSM
ccc	chr14:23538691-23538929(-)$1	238	2	5	8.9999
CCC	chr17:39975427-39975697(+)$1	270	117	120	8.9999
HHH	chr17:79969318-79969551(+)$1	233	12	15	8.9999
:dd	chr2:70457789-70458095(-)$1	306	139	142	8.9999
D:e	chr3:49051298-49051599(+)$1	301	96	99	8.9999
[dd	chr16:8891663-8891920(+)$1	257	26	29	8.9999
eee	chr14:70235844-70236083(+)$1	239	94	97	8.9999
^^^	chr12:104341060-104341309(+)$1	249	37	40	8.9999
ggd	chr12:104332088-104332337(+)$1	249	41	44	8.9999
fff	chr20:4843382-4843647(-)$1	265	53	56	8.9999
KKD	chr22:46751244-46751589(+)$1	345	36	39	8.9999
EEb	chr6:144837848-144838123(+)$1	275	30	33	8.9999
22c	chr2:65658939-65659294(-)$1	355	86	89	8.9999
666	chr17:45755339-45755557(+)$1	218	75	78	8.9999
C{B	chr6:158475895-158476166(+)$1	271	18	21	8.9999
DDD	chr17:73975010-73975276(-)$1	266	0	3	8.9999
fff	chr20:39791787-39792024(+)$1	237	62	65	8.9999
EEE	chr2:27720127-27720366(+)$1	239	16	19	8.9999
hdd	chr12:100934431-100934699(+)$1	268	98	101	8.9999
c[c	chr20:61594922-61595133(+)$1	211	86	89	8.9999
KGG	chr1:70687374-70687639(+)$1	265	9	12	8.9999
c]d	chr7:1024821-1025053(+)$1	232	102	105	8.9999
666	chr17:45755311-45755539(+)$1	228	103	106	8.9999
ccc	chr11:70644448-70644751(-)$1	303	94	97	8.9999
ddD	chr17:7530780-7531109(-)$1	329	117	120	8.9999
d::	chr3:183882549-183882851(+)$1	302	73	76	8.9999
d!!	chr20:31608086-31608305(+)$1	219	58	61	8.9999
::e	chr17:79954214-79954484(+)$1	270	1	4	8.9999
d]f	chr11:290938-291233(+)$1	295	132	135	8.9999
EEE	chr6:158487527-158487774(+)$1	247	44	47	8.9999
FF{	chr12:132414477-132414768(+)$1	291	15	18	8.9999
:::	chr13:107211681-107211958(-)$1	277	3	6	8.9999
hhh	chr20:39791916-39792143(+)$1	227	63	66	8.9999
ffb	chr3:149374545-149374849(-)$1	304	122	125	8.9999
qqe	chr2:63058101-63058395(+)$1	294	51	54	8.9999
::e	chr11:129991525-129991804(+)$1	279	112	115	8.9999
mmc	chr6:158480200-158480483(+)$1	283	16	19	8.9999
:::	chr16:15127067-15127357(+)$1	290	0	3	8.9999
EEE	chr1:53370606-53370864(-)$1	258	5	8	8.9999
EEE	chr20:61594882-61595122(+)$1	240	24	27	8.9999
EEE	chr2:27448985-27449246(+)$1	261	25	28	8.9999
cff	chr1:146684699-146684996(-)$1	297	43	46	8.9999
lff	chr6:31914702-31914960(+)$1	258	10	13	8.9999
bbp	chr19:15763262-15763536(+)$1	274	12	15	8.9999
fff	chr12:69218291-69218542(+)$1	251	55	58	8.9999
b]c	chr12:57499150-57499421(-)$1	271	79	82	8.9999
EEK	chr22:38902004-38902249(-)$1	245	60	63	8.9999
::I	chr12:104341309-104341527(+)$1	218	4	7	8.9999
g]i	chr2:61697693-61697962(-)$1	269	111	114	8.9999
ooo	chr2:54197690-54197988(-)$1	298	5	8	8.9999
mmm	chr1:12677133-12677386(-)$1	253	29	32	8.9999
a[b	chr2:233740584-233740872(+)$1	288	79	82	8.9999
B::	chr14:103568401-103568671(+)$1	270	124	127	8.9999
g::	chr6:31698535-31698810(-)$1	275	66	69	8.9999
===	chr6:31507998-31508221(-)$1	223	74	77	8.9999
::F	chr2:54197788-54198046(-)$1	258	4	7	8.9999
c==	chr21:47565277-47565533(-)$1	256	140	143	8.9999
{A{	chr11:64681220-64681494(-)$1	274	76	79	8.9999
D{B	chr19:36303178-36303469(-)$1	291	66	69	8.9999
:::	chr10:105386791-105387023(-)$1	232	4	7	8.9999
fff	chr17:7127062-7127296(+)$1	234	8	11	8.9999
ddd	chr14:39554916-39555182(-)$1	266	122	125	8.9999
d[c	chr20:3194531-3194794(+)$1	263	3	6	8.9999
ggg	chr6:132199584-132199855(+)$1	271	109	112	8.9999
!!b	chr3:120363105-120363354(-)$1	249	117	120	8.9999
:ff	chr20:61593940-61594182(+)$1	242	1	4	8.9999
iii	chr9:117062804-117063053(+)$1	249	31	34	8.9999
!!a	chr14:103571245-103571495(+)$1	250	16	19	8.9999
JJJ	chr16:75270541-75270835(-)$1	294	23	26	8.9999
DDD	chr19:15508480-15508732(-)$1	252	2	5	8.9999
DDD	chr14:74759762-74760043(-)$1	281	10	13	8.9999
ggg	chr4:1805370-1805601(+)$1	231	75	78	8.9999
HEE	chr1:20811675-20811970(-)$1	295	63	66	8.9999
FKK	chr11:124492743-124493223(+)$1	480	44	47	8.9999
EEE	chr3:48670835-48671078(-)$1	243	13	16	8.9999
eee	chr20:17930883-17931147(-)$1	264	107	110	8.9999
fff	chr20:42086987-42087244(+)$1	257	26	29	8.9999
fff	chr17:79969351-79969576(+)$1	225	34	37	8.9999

#DB
(((	chr14:23538691-23538929(-)$1	1	2	5	8.9999
(((	chr17:39975427-39975697(+)$1	1	117	120	8.9999
(((	chr17:79969318-79969551(+)$1	1	12	15	8.9999
.((	chr2:70457789-70458095(-)$1	1	139	142	8.9999
(.(	chr3:49051298-49051599(+)$1	1	96	99	8.9999
.((	chr16:8891663-8891920(+)$1	1	26	29	8.9999
(((	chr14:70235844-70236083(+)$1	1	94	97	8.9999
...	chr12:104341060-104341309(+)$1	1	37	40	8.9999
)))	chr12:104332088-104332337(+)$1	1	41	44	8.9999
(((	chr20:4843382-4843647(-)$1	1	53	56	8.9999
..(	chr22:46751244-46751589(+)$1	1	36	39	8.9999
(((	chr6:144837848-144838123(+)$1	1	30	33	8.9999
..)	chr2:65658939-65659294(-)$1	1	86	89	8.9999
...	chr17:45755339-45755557(+)$1	1	75	78	8.9999
(.(	chr6:158475895-158476166(+)$1	1	18	21	8.9999
(((	chr17:73975010-73975276(-)$1	1	0	3	8.9999
)))	chr20:39791787-39792024(+)$1	1	62	65	8.9999
(((	chr2:27720127-27720366(+)$1	1	16	19	8.9999
)))	chr12:100934431-100934699(+)$1	1	98	101	8.9999
(.(	chr20:61594922-61595133(+)$1	1	86	89	8.9999
.((	chr1:70687374-70687639(+)$1	1	9	12	8.9999
).)	chr7:1024821-1025053(+)$1	1	102	105	8.9999
...	chr17:45755311-45755539(+)$1	1	103	106	8.9999
)))	chr11:70644448-70644751(-)$1	1	94	97	8.9999
))(	chr17:7530780-7531109(-)$1	1	117	120	8.9999
)..	chr3:183882549-183882851(+)$1	1	73	76	8.9999
(..	chr20:31608086-31608305(+)$1	1	58	61	8.9999
..(	chr17:79954214-79954484(+)$1	1	1	4	8.9999
).)	chr11:290938-291233(+)$1	1	132	135	8.9999
(((	chr6:158487527-158487774(+)$1	1	44	47	8.9999
((.	chr12:132414477-132414768(+)$1	1	15	18	8.9999
...	chr13:107211681-107211958(-)$1	1	3	6	8.9999
(((	chr20:39791916-39792143(+)$1	1	63	66	8.9999
))(	chr3:149374545-149374849(-)$1	1	122	125	8.9999
..)	chr2:63058101-63058395(+)$1	1	51	54	8.9999
..(	chr11:129991525-129991804(+)$1	1	112	115	8.9999
..)	chr6:158480200-158480483(+)$1	1	16	19	8.9999
...	chr16:15127067-15127357(+)$1	1	0	3	8.9999
(((	chr1:53370606-53370864(-)$1	1	5	8	8.9999
(((	chr20:61594882-61595122(+)$1	1	24	27	8.9999
(((	chr2:27448985-27449246(+)$1	1	25	28	8.9999
(((	chr1:146684699-146684996(-)$1	1	43	46	8.9999
.))	chr6:31914702-31914960(+)$1	1	10	13	8.9999
((.	chr19:15763262-15763536(+)$1	1	12	15	8.9999
)))	chr12:69218291-69218542(+)$1	1	55	58	8.9999
).)	chr12:57499150-57499421(-)$1	1	79	82	8.9999
((.	chr22:38902004-38902249(-)$1	1	60	63	8.9999
..(	chr12:104341309-104341527(+)$1	1	4	7	8.9999
).)	chr2:61697693-61697962(-)$1	1	111	114	8.9999
...	chr2:54197690-54197988(-)$1	1	5	8	8.9999
...	chr1:12677133-12677386(-)$1	1	29	32	8.9999
(.(	chr2:233740584-233740872(+)$1	1	79	82	8.9999
)..	chr14:103568401-103568671(+)$1	1	124	127	8.9999
)..	chr6:31698535-31698810(-)$1	1	66	69	8.9999
)))	chr6:31507998-31508221(-)$1	1	74	77	8.9999
..(	chr2:54197788-54198046(-)$1	1	4	7	8.9999
)((	chr21:47565277-47565533(-)$1	1	140	143	8.9999
.(.	chr11:64681220-64681494(-)$1	1	76	79	8.9999
(.(	chr19:36303178-36303469(-)$1	1	66	69	8.9999
...	chr10:105386791-105387023(-)$1	1	4	7	8.9999
(((	chr17:7127062-7127296(+)$1	1	8	11	8.9999
)))	chr14:39554916-39555182(-)$1	1	122	125	8.9999
(.(	chr20:3194531-3194794(+)$1	1	3	6	8.9999
)))	chr6:132199584-132199855(+)$1	1	109	112	8.9999
..(	chr3:120363105-120363354(-)$1	1	117	120	8.9999
.((	chr20:61593940-61594182(+)$1	1	1	4	8.9999
(((	chr9:117062804-117063053(+)$1	1	31	34	8.9999
..(	chr14:103571245-103571495(+)$1	1	16	19	8.9999
(((	chr16:75270541-75270835(-)$1	1	23	26	8.9999
(((	chr19:15508480-15508732(-)$1	1	2	5	8.9999
(((	chr14:74759762-74760043(-)$1	1	10	13	8.9999
(((	chr4:1805370-1805601(+)$1	1	75	78	8.9999
(((	chr1:20811675-20811970(-)$1	1	63	66	8.9999
(..	chr11:124492743-124493223(+)$1	1	44	47	8.9999
(((	chr3:48670835-48671078(-)$1	1	13	16	8.9999
(((	chr20:17930883-17931147(-)$1	1	107	110	8.9999
(((	chr20:42086987-42087244(+)$1	1	26	29	8.9999
(((	chr17:79969351-79969576(+)$1	1	34	37	8.9999

#PSSM
G : 0.92	g : 0.07	
A : 0.92	a : 0.07	
G : 0.92	g : 0.07	

#score	701.9999999999998
#seq	78
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_UTR_m3_run2.nuc.txt

#NT
CCCUG	chr19:5708258-5708489(-)$1	231	25	30	15.0000
CCCUG	chr4:1953731-1954052(+)$1	321	142	147	15.0000
CCCUG	chr11:118919349-118919605(-)$1	256	246	251	15.0000
CCCUG	chr6:29595187-29595442(-)$1	255	184	189	15.0000
CCCUG	chr10:75006767-75007028(-)$1	261	196	201	15.0000
CCCUG	chr19:18548570-18548823(-)$1	253	2	7	15.0000
CCCUG	chr11:47493492-47493794(-)$1	302	87	92	15.0000
CCCUG	chr4:517349-517664(+)$1	315	34	39	15.0000
CCCUG	chrX:48434208-48434464(+)$1	256	201	206	15.0000
CCCUG	chr12:6879246-6879472(+)$1	226	216	221	15.0000
CCCUG	chr12:117348684-117348950(+)$1	266	89	94	15.0000
CCCUG	chr3:156869414-156869691(-)$1	277	49	54	15.0000
CCCUG	chr10:27793144-27793420(+)$1	276	176	181	15.0000
CCCUG	chr19:50168027-50168279(-)$1	252	211	216	15.0000
CCCUG	chr17:79803735-79803967(-)$1	232	83	88	15.0000
CCCUG	chr19:10506606-10506874(-)$1	268	229	234	15.0000
CCCUG	chr20:35401917-35402275(-)$1	358	122	127	15.0000
CCCUG	chr11:581411-581715(+)$1	304	169	174	15.0000
CCCUG	chr6:28119953-28120232(+)$1	279	203	208	15.0000
CCCUG	chr7:72361080-72361348(+)$1	268	147	152	15.0000
CCCUG	chr17:27001456-27001711(+)$1	255	200	205	15.0000
CCCUG	chr2:135809912-135810178(+)$1	266	181	186	15.0000
CCCUG	chr16:84215076-84215367(-)$1	291	90	95	15.0000
CCCUG	chr16:15068829-15069145(+)$1	316	237	242	15.0000
CCCUG	chr11:3050435-3050774(-)$1	339	286	291	15.0000
CCCUG	chr1:19430993-19431266(-)$1	273	125	130	15.0000
CCCUG	chr12:93966458-93966742(+)$1	284	219	224	15.0000
CCCUG	chr11:126145861-126146238(+)$1	377	213	218	15.0000
CCCUG	chr20:32245422-32245691(-)$1	269	9	14	15.0000
CCCUG	chr17:4575292-4575605(-)$1	313	261	266	15.0000
CCCUG	chr12:133249120-133249376(-)$1	256	175	180	15.0000
CCCUG	chr4:83802965-83803196(-)$1	231	151	156	15.0000
CCCUG	chr3:9868605-9868828(+)$1	223	50	55	15.0000
CCCUG	chr19:50167784-50168086(-)$1	302	18	23	15.0000
CCCUG	chr19:19416529-19416809(-)$1	280	36	41	15.0000
CCCUG	chr4:728612-728901(+)$1	289	61	66	15.0000
CCCUG	chr9:140289648-140289946(-)$1	298	129	134	15.0000
CCCUG	chr19:17449341-17449648(+)$1	307	260	265	15.0000
CCCUG	chr4:174253129-174253341(-)$1	212	2	7	15.0000
CCCUG	chr2:234762963-234763273(-)$1	310	86	91	15.0000
CCCUG	chr11:290477-290706(+)$1	229	173	178	15.0000
CCCUG	chr16:1904015-1904287(-)$1	272	220	225	15.0000
CCCUG	chr11:82868141-82868416(+)$1	275	183	188	15.0000
CCCUG	chr14:74755277-74755573(-)$1	296	42	47	15.0000
CCCUG	chr1:90493063-90493300(+)$1	237	169	174	15.0000
CCCUG	chr7:105172599-105172901(+)$1	302	214	219	15.0000
CCCUG	chr3:186504883-186505151(+)$1	268	255	260	15.0000
CCCUG	chr9:131830409-131830691(+)$1	282	213	218	15.0000
CCCUG	chr9:139733697-139733977(+)$1	280	37	42	15.0000

#otherMatches

#Struct PSSM
eeee!	chr9:74383197-74383526(-)$1	329	198	203	15.0000
EEEKK	chr19:5708258-5708489(-)$1	231	25	30	15.0000
bb!!=	chr4:1953731-1954052(+)$1	321	142	147	15.0000
eeEEE	chr11:118919349-118919605(-)$1	256	246	251	15.0000
GGGGG	chr6:29595187-29595442(-)$1	255	184	189	15.0000
dd22d	chr10:75006767-75007028(-)$1	261	196	201	15.0000
DDKKB	chr19:18548570-18548823(-)$1	253	2	7	15.0000
Fbb[a	chr11:47493492-47493794(-)$1	302	87	92	15.0000
EELLL	chr4:517349-517664(+)$1	315	34	39	15.0000
ppppe	chrX:48434208-48434464(+)$1	256	201	206	15.0000
FFFFF	chr12:6879246-6879472(+)$1	226	216	221	15.0000
!!fff	chr12:117348684-117348950(+)$1	266	89	94	15.0000
]dddd	chr3:156869414-156869691(-)$1	277	49	54	15.0000
gggg"	chr10:27793144-27793420(+)$1	276	176	181	15.0000
ZEEEE	chr19:50168027-50168279(-)$1	252	211	216	15.0000
eee::	chr17:79803735-79803967(-)$1	232	83	88	15.0000
2ccc:	chr19:10506606-10506874(-)$1	268	229	234	15.0000
ddddm	chr20:35401917-35402275(-)$1	358	122	127	15.0000
iiiii	chr11:581411-581715(+)$1	304	169	174	15.0000
eeqqq	chr6:28119953-28120232(+)$1	279	203	208	15.0000
eeeee	chr7:72361080-72361348(+)$1	268	147	152	15.0000
DDEEE	chr17:27001456-27001711(+)$1	255	200	205	15.0000
D::dd	chr2:135809912-135810178(+)$1	266	181	186	15.0000
cc###	chr16:84215076-84215367(-)$1	291	90	95	15.0000
!cccn	chr16:15068829-15069145(+)$1	316	237	242	15.0000
GGGGG	chr11:3050435-3050774(-)$1	339	286	291	15.0000
JJJJJ	chr1:19430993-19431266(-)$1	273	125	130	15.0000
"aeee	chr12:93966458-93966742(+)$1	284	219	224	15.0000
JJJJJ	chr11:126145861-126146238(+)$1	377	213	218	15.0000
:::::	chr20:32245422-32245691(-)$1	269	9	14	15.0000
44ccc	chr17:4575292-4575605(-)$1	313	261	266	15.0000
d!!dd	chr12:133249120-133249376(-)$1	256	175	180	15.0000
EEDDD	chr4:83802965-83803196(-)$1	231	151	156	15.0000
cbbbb	chr3:9868605-9868828(+)$1	223	50	55	15.0000
HHKKE	chr19:50167784-50168086(-)$1	302	18	23	15.0000
]eeee	chr19:19416529-19416809(-)$1	280	36	41	15.0000
dd[gg	chr4:728612-728901(+)$1	289	61	66	15.0000
GGGGY	chr9:140289648-140289946(-)$1	298	129	134	15.0000
AEEEE	chr19:17449341-17449648(+)$1	307	260	265	15.0000
ddooo	chr4:174253129-174253341(-)$1	212	2	7	15.0000
GGGGG	chr2:234762963-234763273(-)$1	310	86	91	15.0000
eeeed	chr11:290477-290706(+)$1	229	173	178	15.0000
BFFFF	chr16:1904015-1904287(-)$1	272	220	225	15.0000
BBIII	chr11:82868141-82868416(+)$1	275	183	188	15.0000
BJJJJ	chr14:74755277-74755573(-)$1	296	42	47	15.0000
ee]a]	chr1:90493063-90493300(+)$1	237	169	174	15.0000
ddddd	chr7:105172599-105172901(+)$1	302	214	219	15.0000
3gggg	chr3:186504883-186505151(+)$1	268	255	260	15.0000
cc!!b	chr9:131830409-131830691(+)$1	282	213	218	15.0000
ggggg	chr9:139733697-139733977(+)$1	280	37	42	15.0000

#DB
((((.	chr9:74383197-74383526(-)$1	1	198	203	15.0000
(((..	chr19:5708258-5708489(-)$1	1	25	30	15.0000
((..(	chr4:1953731-1954052(+)$1	1	142	147	15.0000
)))))	chr11:118919349-118919605(-)$1	1	246	251	15.0000
)))))	chr6:29595187-29595442(-)$1	1	184	189	15.0000
))..)	chr10:75006767-75007028(-)$1	1	196	201	15.0000
((..(	chr19:18548570-18548823(-)$1	1	2	7	15.0000
(((.(	chr11:47493492-47493794(-)$1	1	87	92	15.0000
((...	chr4:517349-517664(+)$1	1	34	39	15.0000
....)	chrX:48434208-48434464(+)$1	1	201	206	15.0000
)))))	chr12:6879246-6879472(+)$1	1	216	221	15.0000
..(((	chr12:117348684-117348950(+)$1	1	89	94	15.0000
.))))	chr3:156869414-156869691(-)$1	1	49	54	15.0000
((((.	chr10:27793144-27793420(+)$1	1	176	181	15.0000
.))))	chr19:50168027-50168279(-)$1	1	211	216	15.0000
)))..	chr17:79803735-79803967(-)$1	1	83	88	15.0000
.))).	chr19:10506606-10506874(-)$1	1	229	234	15.0000
((((.	chr20:35401917-35402275(-)$1	1	122	127	15.0000
)))))	chr11:581411-581715(+)$1	1	169	174	15.0000
((...	chr6:28119953-28120232(+)$1	1	203	208	15.0000
(((((	chr7:72361080-72361348(+)$1	1	147	152	15.0000
)))))	chr17:27001456-27001711(+)$1	1	200	205	15.0000
)..((	chr2:135809912-135810178(+)$1	1	181	186	15.0000
((...	chr16:84215076-84215367(-)$1	1	90	95	15.0000
.(((.	chr16:15068829-15069145(+)$1	1	237	242	15.0000
)))))	chr11:3050435-3050774(-)$1	1	286	291	15.0000
(((((	chr1:19430993-19431266(-)$1	1	125	130	15.0000
.((((	chr12:93966458-93966742(+)$1	1	219	224	15.0000
(((((	chr11:126145861-126146238(+)$1	1	213	218	15.0000
.....	chr20:32245422-32245691(-)$1	1	9	14	15.0000
..)))	chr17:4575292-4575605(-)$1	1	261	266	15.0000
(..((	chr12:133249120-133249376(-)$1	1	175	180	15.0000
)))))	chr4:83802965-83803196(-)$1	1	151	156	15.0000
(((((	chr3:9868605-9868828(+)$1	1	50	55	15.0000
((..(	chr19:50167784-50168086(-)$1	1	18	23	15.0000
.))))	chr19:19416529-19416809(-)$1	1	36	41	15.0000
((.((	chr4:728612-728901(+)$1	1	61	66	15.0000
)))).	chr9:140289648-140289946(-)$1	1	129	134	15.0000
)))))	chr19:17449341-17449648(+)$1	1	260	265	15.0000
((...	chr4:174253129-174253341(-)$1	1	2	7	15.0000
(((((	chr2:234762963-234763273(-)$1	1	86	91	15.0000
))))(	chr11:290477-290706(+)$1	1	173	178	15.0000
)))))	chr16:1904015-1904287(-)$1	1	220	225	15.0000
)))))	chr11:82868141-82868416(+)$1	1	183	188	15.0000
(((((	chr14:74755277-74755573(-)$1	1	42	47	15.0000
)).).	chr1:90493063-90493300(+)$1	1	169	174	15.0000
(((((	chr7:105172599-105172901(+)$1	1	214	219	15.0000
.))))	chr3:186504883-186505151(+)$1	1	255	260	15.0000
((..(	chr9:131830409-131830691(+)$1	1	213	218	15.0000
(((((	chr9:139733697-139733977(+)$1	1	37	42	15.0000

#PSSM
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	

#score	750.0000000000001
#seq	50
#width	5
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_CDS_m3_run2.nuc.txt

#NT
UGGG	chr15:74703845-74704094(-)$1	249	0	4	11.9999
UGGG	chr15:39881079-39881324(+)$1	245	220	224	11.9999
UGGG	chr11:6458592-6458855(-)$1	263	37	41	11.9999
UGGG	chr2:20202875-20203104(-)$1	229	112	116	11.9999
UGGG	chr8:22273357-22273570(+)$1	213	93	97	11.9999
UGGG	chr6:29912188-29912427(+)$1	239	118	122	11.9999
UGGG	chr8:22262320-22262547(+)$1	227	0	4	11.9999
UGGG	chr5:177020569-177020792(+)$1	223	212	216	11.9999
UGGG	chr2:97399169-97399411(-)$1	242	103	107	11.9999
UGGG	chr11:837165-837447(+)$1	282	15	19	11.9999
UGGG	chr19:11559980-11560198(+)$1	218	35	39	11.9999
UGGG	chr6:43098287-43098499(+)$1	212	126	130	11.9999
UGGG	chr11:6635788-6636017(-)$1	229	172	176	11.9999
UGGG	chr11:121485563-121485811(+)$1	248	57	61	11.9999
UGGG	chr19:6713153-6713373(-)$1	220	129	133	11.9999
UGGG	chr1:150940196-150940437(-)$1	241	24	28	11.9999
UGGG	chr12:50149316-50149553(+)$1	237	120	124	11.9999
UGGG	chr10:95360327-95360555(-)$1	228	0	4	11.9999
UGGG	chr10:73578689-73578931(-)$1	242	155	159	11.9999
UGGG	chr2:120012162-120012502(+)$1	340	121	125	11.9999
UGGG	chr15:75140839-75141072(-)$1	233	122	126	11.9999
UGGG	chr19:45412035-45412257(+)$1	222	113	117	11.9999
UGGG	chr8:145639297-145639546(-)$1	249	7	11	11.9999
UGGG	chr13:24189988-24190237(+)$1	249	34	38	11.9999
UGGG	chr1:110466099-110466330(+)$1	231	39	43	11.9999
UGGG	chr15:39881989-39882231(+)$1	242	45	49	11.9999
UGGG	chr17:80195113-80195400(+)$1	287	29	33	11.9999
UGGG	chr3:127786280-127786515(+)$1	235	113	117	11.9999
UGGG	chr4:79284633-79284891(+)$1	258	79	83	11.9999
UGGG	chr4:155529569-155529790(-)$1	221	82	86	11.9999
UGGG	chr19:14675797-14676036(+)$1	239	17	21	11.9999
UGGG	chr14:95056382-95056600(+)$1	218	0	4	11.9999
UGGG	chr1:43212875-43213117(-)$1	242	65	69	11.9999
UGGG	chr19:10395017-10395233(+)$1	216	1	5	11.9999
UGGG	chr22:39222404-39222784(-)$1	380	308	312	11.9999
UGGG	chr13:50235143-50235435(-)$1	292	236	240	11.9999
UGGG	chr16:68849476-68849749(+)$1	273	122	126	11.9999
UGGG	chr19:12986764-12987022(-)$1	258	101	105	11.9999
UGGG	chr3:9984968-9985282(+)$1	314	50	54	11.9999
UGGG	chr15:74702894-74703133(-)$1	239	89	93	11.9999
UGGG	chr9:117093760-117094006(+)$1	246	175	179	11.9999
UGGG	chr3:49568765-49568990(+)$1	225	62	66	11.9999
UGGG	chr20:30733029-30733274(+)$1	245	4	8	11.9999
UGGG	chr11:33731695-33731949(-)$1	254	199	203	11.9999
UGGG	chr2:128459470-128459744(+)$1	274	89	93	11.9999
UGGG	chrX:153063160-153063369(+)$1	209	146	150	11.9999
UGGG	chr14:101200535-101200787(+)$1	252	109	113	11.9999
UGGG	chr6:31324363-31324571(-)$1	208	13	17	11.9999
UGGG	chr17:79805065-79805305(-)$1	240	213	217	11.9999
UGGG	chr19:19231473-19231691(-)$1	218	115	119	11.9999
UGGG	chr16:18542719-18542966(-)$1	247	159	163	11.9999
UGGG	chr1:183111568-183111789(+)$1	221	12	16	11.9999
UGGG	chr11:118916420-118916645(-)$1	225	177	181	11.9999
UGGG	chr6:43097998-43098249(+)$1	251	83	87	11.9999
UGGG	chr15:50474746-50475033(+)$1	287	209	213	11.9999
UGGG	chr17:6606288-6606547(-)$1	259	31	35	11.9999
UGGG	chr14:95088624-95088865(+)$1	241	127	131	11.9999
UGGG	chr16:5123145-5123357(+)$1	212	9	13	11.9999
UGGG	chr8:145638538-145638797(-)$1	259	54	58	11.9999
UGGG	chr2:74689904-74690159(-)$1	255	159	163	11.9999
UGGG	chrX:153663939-153664180(+)$1	241	41	45	11.9999
UGGG	chr4:155490337-155490559(+)$1	222	49	53	11.9999
UGGG	chr7:99573477-99573685(-)$1	208	85	89	11.9999
UGGG	chr11:1774964-1775184(-)$1	220	105	109	11.9999
UGGG	chr12:6341697-6341997(+)$1	300	46	50	11.9999
UGGG	chr1:169100528-169100783(+)$1	255	47	51	11.9999
UGGG	chr3:186793294-186793540(+)$1	246	2	6	11.9999
UGGG	chr12:106633499-106633747(-)$1	248	49	53	11.9999
UGGG	chrX:153063464-153063691(+)$1	227	154	158	11.9999
UGGG	chr1:183084604-183084873(+)$1	269	107	111	11.9999
UGGG	chr19:11558313-11558521(+)$1	208	129	133	11.9999
UGGG	chr22:25016914-25017137(+)$1	223	128	132	11.9999
UGGG	chr17:78079482-78079717(+)$1	235	32	36	11.9999
UGGG	chr6:43480397-43480655(-)$1	258	57	61	11.9999
UGGG	chr3:133475702-133475933(+)$1	231	104	108	11.9999
UGGG	chr1:183085836-183086071(+)$1	235	131	135	11.9999
UGGG	chr4:110681325-110681567(-)$1	242	156	160	11.9999
UGGG	chr18:29175093-29175318(+)$1	225	16	20	11.9999
UGGG	chr12:125397016-125397249(-)$1	233	68	72	11.9999
UGGG	chrX:70443621-70443855(+)$1	234	65	69	11.9999
UGGG	chr7:107601948-107602172(-)$1	224	12	16	11.9999
UGGG	chr16:29888602-29888880(-)$1	278	25	29	11.9999
UGGG	chr14:95088577-95088779(+)$1	202	39	43	11.9999
UGGG	chr2:162879189-162879408(-)$1	219	132	136	11.9999
UGGG	chr6:29692845-29693079(+)$1	234	24	28	11.9999
UGGG	chr12:58112046-58112298(+)$1	252	45	49	11.9999
UGGG	chr18:29172796-29173044(+)$1	248	173	177	11.9999
UGGG	chr14:31347916-31348172(+)$1	256	45	49	11.9999
UGGG	chr1:160321743-160321957(+)$1	214	48	52	11.9999

#otherMatches

#Struct PSSM
Feee	chrX:2856035-2856293(-)$1	258	7	11	11.9999
dddd	chr15:74703845-74704094(-)$1	249	0	4	11.9999
FFFF	chr15:39881079-39881324(+)$1	245	220	224	11.9999
iiii	chr11:6458592-6458855(-)$1	263	37	41	11.9999
}GGG	chr2:20202875-20203104(-)$1	229	112	116	11.9999
====	chr8:22273357-22273570(+)$1	213	93	97	11.9999
ffff	chr6:29912188-29912427(+)$1	239	118	122	11.9999
:CCC	chr8:22262320-22262547(+)$1	227	0	4	11.9999
EEEE	chr5:177020569-177020792(+)$1	223	212	216	11.9999
====	chr2:97399169-97399411(-)$1	242	103	107	11.9999
gggg	chr11:837165-837447(+)$1	282	15	19	11.9999
FFFF	chr19:11559980-11560198(+)$1	218	35	39	11.9999
JJJJ	chr6:43098287-43098499(+)$1	212	126	130	11.9999
FFF}	chr11:6635788-6636017(-)$1	229	172	176	11.9999
LEEE	chr11:121485563-121485811(+)$1	248	57	61	11.9999
eeec	chr19:6713153-6713373(-)$1	220	129	133	11.9999
c[bb	chr1:150940196-150940437(-)$1	241	24	28	11.9999
3eee	chr12:50149316-50149553(+)$1	237	120	124	11.9999
:DDD	chr10:95360327-95360555(-)$1	228	0	4	11.9999
:ddd	chr10:73578689-73578931(-)$1	242	155	159	11.9999
mmee	chr2:120012162-120012502(+)$1	340	121	125	11.9999
HHHH	chr15:75140839-75141072(-)$1	233	122	126	11.9999
gggg	chr19:45412035-45412257(+)$1	222	113	117	11.9999
IIII	chr8:145639297-145639546(-)$1	249	7	11	11.9999
eeee	chr13:24189988-24190237(+)$1	249	34	38	11.9999
eeee	chr1:110466099-110466330(+)$1	231	39	43	11.9999
eeee	chr15:39881989-39882231(+)$1	242	45	49	11.9999
EEEE	chr17:80195113-80195400(+)$1	287	29	33	11.9999
eeee	chr3:127786280-127786515(+)$1	235	113	117	11.9999
bbdd	chr4:79284633-79284891(+)$1	258	79	83	11.9999
c"""	chr4:155529569-155529790(-)$1	221	82	86	11.9999
gggg	chr19:14675797-14676036(+)$1	239	17	21	11.9999
:bb!	chr14:95056382-95056600(+)$1	218	0	4	11.9999
llbb	chr1:43212875-43213117(-)$1	242	65	69	11.9999
IIII	chr19:10395017-10395233(+)$1	216	1	5	11.9999
{BBg	chr22:39222404-39222784(-)$1	380	308	312	11.9999
iiii	chr13:50235143-50235435(-)$1	292	236	240	11.9999
eeee	chr16:68849476-68849749(+)$1	273	122	126	11.9999
dddd	chr19:12986764-12987022(-)$1	258	101	105	11.9999
cc""	chr3:9984968-9985282(+)$1	314	50	54	11.9999
GGGG	chr15:74702894-74703133(-)$1	239	89	93	11.9999
''gg	chr9:117093760-117094006(+)$1	246	175	179	11.9999
{JJJ	chr3:49568765-49568990(+)$1	225	62	66	11.9999
GGGe	chr20:30733029-30733274(+)$1	245	4	8	11.9999
gggg	chr11:33731695-33731949(-)$1	254	199	203	11.9999
]ddd	chr2:128459470-128459744(+)$1	274	89	93	11.9999
phhh	chrX:153063160-153063369(+)$1	209	146	150	11.9999
gggg	chr14:101200535-101200787(+)$1	252	109	113	11.9999
EEEE	chr6:31324363-31324571(-)$1	208	13	17	11.9999
ee:J	chr17:79805065-79805305(-)$1	240	213	217	11.9999
eeee	chr19:19231473-19231691(-)$1	218	115	119	11.9999
ffff	chr16:18542719-18542966(-)$1	247	159	163	11.9999
PBBD	chr1:183111568-183111789(+)$1	221	12	16	11.9999
EEEE	chr11:118916420-118916645(-)$1	225	177	181	11.9999
ffff	chr6:43097998-43098249(+)$1	251	83	87	11.9999
7ddd	chr15:50474746-50475033(+)$1	287	209	213	11.9999
iiii	chr17:6606288-6606547(-)$1	259	31	35	11.9999
eee#	chr14:95088624-95088865(+)$1	241	127	131	11.9999
KKBB	chr16:5123145-5123357(+)$1	212	9	13	11.9999
GGGG	chr8:145638538-145638797(-)$1	259	54	58	11.9999
oddd	chr2:74689904-74690159(-)$1	255	159	163	11.9999
ffff	chrX:153663939-153664180(+)$1	241	41	45	11.9999
a[ff	chr4:155490337-155490559(+)$1	222	49	53	11.9999
c[cc	chr7:99573477-99573685(-)$1	208	85	89	11.9999
dddd	chr11:1774964-1775184(-)$1	220	105	109	11.9999
dd22	chr12:6341697-6341997(+)$1	300	46	50	11.9999
dccc	chr1:169100528-169100783(+)$1	255	47	51	11.9999
:ddd	chr3:186793294-186793540(+)$1	246	2	6	11.9999
qqdd	chr12:106633499-106633747(-)$1	248	49	53	11.9999
EEEE	chrX:153063464-153063691(+)$1	227	154	158	11.9999
::::	chr1:183084604-183084873(+)$1	269	107	111	11.9999
ffff	chr19:11558313-11558521(+)$1	208	129	133	11.9999
c666	chr22:25016914-25017137(+)$1	223	128	132	11.9999
Hddd	chr17:78079482-78079717(+)$1	235	32	36	11.9999
mddd	chr6:43480397-43480655(-)$1	258	57	61	11.9999
pddd	chr3:133475702-133475933(+)$1	231	104	108	11.9999
:eee	chr1:183085836-183086071(+)$1	235	131	135	11.9999
"ccc	chr4:110681325-110681567(-)$1	242	156	160	11.9999
nnee	chr18:29175093-29175318(+)$1	225	16	20	11.9999
{GGG	chr12:125397016-125397249(-)$1	233	68	72	11.9999
h[ff	chrX:70443621-70443855(+)$1	234	65	69	11.9999
[ccc	chr7:107601948-107602172(-)$1	224	12	16	11.9999
A{BB	chr16:29888602-29888880(-)$1	278	25	29	11.9999
JJJJ	chr14:95088577-95088779(+)$1	202	39	43	11.9999
eeee	chr2:162879189-162879408(-)$1	219	132	136	11.9999
DDD:	chr6:29692845-29693079(+)$1	234	24	28	11.9999
bwww	chr12:58112046-58112298(+)$1	252	45	49	11.9999
CCCf	chr18:29172796-29173044(+)$1	248	173	177	11.9999
[bbm	chr14:31347916-31348172(+)$1	256	45	49	11.9999
IIII	chr1:160321743-160321957(+)$1	214	48	52	11.9999

#DB
((((	chrX:2856035-2856293(-)$1	1	7	11	11.9999
((((	chr15:74703845-74704094(-)$1	1	0	4	11.9999
))))	chr15:39881079-39881324(+)$1	1	220	224	11.9999
))))	chr11:6458592-6458855(-)$1	1	37	41	11.9999
.)))	chr2:20202875-20203104(-)$1	1	112	116	11.9999
))))	chr8:22273357-22273570(+)$1	1	93	97	11.9999
))))	chr6:29912188-29912427(+)$1	1	118	122	11.9999
.(((	chr8:22262320-22262547(+)$1	1	0	4	11.9999
))))	chr5:177020569-177020792(+)$1	1	212	216	11.9999
))))	chr2:97399169-97399411(-)$1	1	103	107	11.9999
((((	chr11:837165-837447(+)$1	1	15	19	11.9999
((((	chr19:11559980-11560198(+)$1	1	35	39	11.9999
))))	chr6:43098287-43098499(+)$1	1	126	130	11.9999
))).	chr11:6635788-6636017(-)$1	1	172	176	11.9999
.(((	chr11:121485563-121485811(+)$1	1	57	61	11.9999
((((	chr19:6713153-6713373(-)$1	1	129	133	11.9999
(.((	chr1:150940196-150940437(-)$1	1	24	28	11.9999
.)))	chr12:50149316-50149553(+)$1	1	120	124	11.9999
.(((	chr10:95360327-95360555(-)$1	1	0	4	11.9999
.(((	chr10:73578689-73578931(-)$1	1	155	159	11.9999
..))	chr2:120012162-120012502(+)$1	1	121	125	11.9999
))))	chr15:75140839-75141072(-)$1	1	122	126	11.9999
))))	chr19:45412035-45412257(+)$1	1	113	117	11.9999
((((	chr8:145639297-145639546(-)$1	1	7	11	11.9999
))))	chr13:24189988-24190237(+)$1	1	34	38	11.9999
((((	chr1:110466099-110466330(+)$1	1	39	43	11.9999
))))	chr15:39881989-39882231(+)$1	1	45	49	11.9999
((((	chr17:80195113-80195400(+)$1	1	29	33	11.9999
))))	chr3:127786280-127786515(+)$1	1	113	117	11.9999
))))	chr4:79284633-79284891(+)$1	1	79	83	11.9999
(...	chr4:155529569-155529790(-)$1	1	82	86	11.9999
((((	chr19:14675797-14676036(+)$1	1	17	21	11.9999
.((.	chr14:95056382-95056600(+)$1	1	0	4	11.9999
..))	chr1:43212875-43213117(-)$1	1	65	69	11.9999
((((	chr19:10395017-10395233(+)$1	1	1	5	11.9999
.(((	chr22:39222404-39222784(-)$1	1	308	312	11.9999
((((	chr13:50235143-50235435(-)$1	1	236	240	11.9999
((((	chr16:68849476-68849749(+)$1	1	122	126	11.9999
((((	chr19:12986764-12987022(-)$1	1	101	105	11.9999
((..	chr3:9984968-9985282(+)$1	1	50	54	11.9999
))))	chr15:74702894-74703133(-)$1	1	89	93	11.9999
..((	chr9:117093760-117094006(+)$1	1	175	179	11.9999
.(((	chr3:49568765-49568990(+)$1	1	62	66	11.9999
((((	chr20:30733029-30733274(+)$1	1	4	8	11.9999
((((	chr11:33731695-33731949(-)$1	1	199	203	11.9999
.)))	chr2:128459470-128459744(+)$1	1	89	93	11.9999
.)))	chrX:153063160-153063369(+)$1	1	146	150	11.9999
))))	chr14:101200535-101200787(+)$1	1	109	113	11.9999
((((	chr6:31324363-31324571(-)$1	1	13	17	11.9999
)).)	chr17:79805065-79805305(-)$1	1	213	217	11.9999
))))	chr19:19231473-19231691(-)$1	1	115	119	11.9999
))))	chr16:18542719-18542966(-)$1	1	159	163	11.9999
.(((	chr1:183111568-183111789(+)$1	1	12	16	11.9999
))))	chr11:118916420-118916645(-)$1	1	177	181	11.9999
((((	chr6:43097998-43098249(+)$1	1	83	87	11.9999
.)))	chr15:50474746-50475033(+)$1	1	209	213	11.9999
))))	chr17:6606288-6606547(-)$1	1	31	35	11.9999
(((.	chr14:95088624-95088865(+)$1	1	127	131	11.9999
..((	chr16:5123145-5123357(+)$1	1	9	13	11.9999
((((	chr8:145638538-145638797(-)$1	1	54	58	11.9999
.)))	chr2:74689904-74690159(-)$1	1	159	163	11.9999
))))	chrX:153663939-153664180(+)$1	1	41	45	11.9999
(.((	chr4:155490337-155490559(+)$1	1	49	53	11.9999
(.((	chr7:99573477-99573685(-)$1	1	85	89	11.9999
((((	chr11:1774964-1775184(-)$1	1	105	109	11.9999
))..	chr12:6341697-6341997(+)$1	1	46	50	11.9999
)(((	chr1:169100528-169100783(+)$1	1	47	51	11.9999
.(((	chr3:186793294-186793540(+)$1	1	2	6	11.9999
..))	chr12:106633499-106633747(-)$1	1	49	53	11.9999
))))	chrX:153063464-153063691(+)$1	1	154	158	11.9999
....	chr1:183084604-183084873(+)$1	1	107	111	11.9999
))))	chr19:11558313-11558521(+)$1	1	129	133	11.9999
)...	chr22:25016914-25017137(+)$1	1	128	132	11.9999
((((	chr17:78079482-78079717(+)$1	1	32	36	11.9999
.)))	chr6:43480397-43480655(-)$1	1	57	61	11.9999
.)))	chr3:133475702-133475933(+)$1	1	104	108	11.9999
.(((	chr1:183085836-183086071(+)$1	1	131	135	11.9999
.(((	chr4:110681325-110681567(-)$1	1	156	160	11.9999
..))	chr18:29175093-29175318(+)$1	1	16	20	11.9999
.(((	chr12:125397016-125397249(-)$1	1	68	72	11.9999
(.((	chrX:70443621-70443855(+)$1	1	65	69	11.9999
.(((	chr7:107601948-107602172(-)$1	1	12	16	11.9999
(.((	chr16:29888602-29888880(-)$1	1	25	29	11.9999
((((	chr14:95088577-95088779(+)$1	1	39	43	11.9999
))))	chr2:162879189-162879408(-)$1	1	132	136	11.9999
(((.	chr6:29692845-29693079(+)$1	1	24	28	11.9999
(...	chr12:58112046-58112298(+)$1	1	45	49	11.9999
)))(	chr18:29172796-29173044(+)$1	1	173	177	11.9999
.((.	chr14:31347916-31348172(+)$1	1	45	49	11.9999
((((	chr1:160321743-160321957(+)$1	1	48	52	11.9999

#PSSM
U : 0.99	
G : 0.99	
G : 0.99	
G : 0.99	

#score	1079.9999999999995
#seq	90
#width	4
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_UTR_m1_run1.nuc.txt

#NT
UGUUUUUGUUU	chr22:32894442-32894824(+)$1	382	107	118	21.4745
UGCAUUUGUUU	chr9:75773340-75773597(+)$1	257	56	67	14.5254
UGUUUGUCUUU	chr6:31797626-31797877(+)$1	251	46	57	18.5084
UCUUUUAUUUU	chr16:28848290-28848533(+)$1	243	81	92	15.2033
UUGUUUUAUUU	chr1:201103834-201104117(-)$1	283	201	212	15.0338
UGUAUUGGUUU	chr3:49396927-49397255(-)$1	328	269	280	13.8474
UGCUUUUCAUU	chr9:127998651-127998879(-)$1	228	157	168	14.7796
UGUCUUAUUUU	chr2:15770943-15771270(+)$1	327	298	309	14.7796
UGUUGUUUUUU	chrX:151899489-151899764(-)$1	275	215	226	17.9999
UUUUUUUCUCU	chr2:44115539-44115831(-)$1	292	273	284	14.7796
UGGUGUUCUUU	chr9:114124131-114124404(-)$1	273	147	158	15.5423
UGCUUUUGUUU	chr4:120987814-120988069(-)$1	255	157	168	18.6779
UGUAUUUUUUU	chr1:45976741-45976972(-)$1	231	30	41	17.6610
UGGUUUUCUAU	chr1:6245130-6245434(-)$1	304	267	278	15.2033
UGUUUUUUUCU	chr12:98994911-98995157(+)$1	246	157	168	17.6610
UUUUUUUGUUG	chr2:170668290-170668556(+)$1	266	95	106	13.7627
UGCUUUUGUAU	chr5:10264923-10265191(+)$1	268	161	172	14.5254
UGCUUUUAUUU	chr16:56448073-56448346(-)$1	273	35	46	18.2542
UUUUUAUCUUU	chr1:51820165-51820445(-)$1	280	1	12	14.8644
UUUUGUUCUUU	chrX:40465034-40465309(+)$1	275	90	101	15.1186
UGAUUUUAUUU	chr1:207217229-207217497(-)$1	268	217	228	18.0847
AGUUGUUCUUU	chr18:43666031-43666296(-)$1	265	221	232	14.0169
UGGUUUUCCUU	chr14:24759760-24760131(-)$1	371	243	254	14.8644
GGGUUUUGUUU	chr6:31765239-31765526(-)$1	287	82	93	14.1864
UGUUUUUUGUU	chr17:38328211-38328473(+)$1	262	130	141	17.2372
UGUUUGAUUUU	chr8:117858120-117858398(-)$1	278	79	90	15.2881
UCUUUUUCUUU	chr14:69847010-69847345(-)$1	335	269	280	18.4237
CUUUUUUCUUU	chr17:48829721-48829963(+)$1	242	71	82	14.4406
UGCUUGUGUUU	chr7:30673440-30673709(+)$1	269	222	233	15.0338
UGAUUUCAUUU	chr5:145493463-145493758(-)$1	295	192	203	14.8644
UGUCUUUCCUU	chr4:57368918-57369213(+)$1	295	154	165	13.5084
UGAUUUUUUUU	chr2:10269538-10269822(+)$1	284	3	14	18.8474
AGUUUGUCUUU	chr19:10800089-10800383(+)$1	294	205	216	14.1864
UGUUAUCUUUU	chr12:16055937-16056240(+)$1	303	203	214	14.4406
UGCCUUUUUUU	chr10:85912255-85912497(+)$1	242	5	16	14.8644
UGUUUUAGUUU	chr10:3178719-3179031(+)$1	312	283	294	18.5932
UGGUUUAUUUU	chr14:102547691-102547901(-)$1	210	65	76	16.1355
UGUUGUCCUUU	chr11:18428875-18429098(+)$1	223	18	29	15.1186
UGUUUGAAUUU	chr20:32868166-32868400(-)$1	234	9	20	14.5254
UGUUUUAUUUG	chr6:8079825-8080123(-)$1	298	148	159	14.4406
UGUUUAUCUCU	chr8:100890361-100890594(-)$1	233	62	73	13.9322
UGUUUUUAUGU	chr5:134670371-134670618(-)$1	247	123	134	16.7288
UGUGUUUAUUU	chr15:85213054-85213329(-)$1	275	13	24	16.7288
UGUUUUUCUUU	chr10:71962796-71963038(-)$1	242	72	83	22.1525
UGUUUUUCUUU	chr10:71962662-71962993(-)$1	331	27	38	22.1525
UGUUUUUUUUU	chr8:48685597-48685855(-)$1	258	89	100	21.8135
UGUuuuuauuu	chr17:37006343-37006567(-)$1	224	63	74	21.0508
UUUUUUCCUUU	chr2:65495892-65496174(+)$1	282	14	25	15.7118
UGUUUUGUUUU	chr11:75114971-75115275(+)$1	304	23	34	18.3389
UCUUUGUGUUU	chr10:51589297-51589551(+)$1	254	8	19	14.1016
UGGUUUAUUUU	chr14:102547730-102547951(-)$1	221	115	126	16.1355
UGUUGUCCUUU	chr11:18428831-18429075(+)$1	244	62	73	15.1186
UUUUUUUUUUU	chr2:54092421-54092683(-)$1	262	187	198	18.5932
AGUUUUUCUUG	chr11:64084194-64084412(-)$1	218	94	105	13.3389
UGAUUUUGUUU	chr2:176042861-176043069(-)$1	208	34	45	18.5084
UGUUUUUGUAU	chr1:145442427-145442644(+)$1	217	79	90	17.3220
UUUUAUUCUUU	chr7:56169198-56169449(-)$1	251	139	150	14.7796
UGUUUGAUUUU	chr10:70551042-70551339(+)$1	297	64	75	15.2881

#otherMatches

#Struct PSSM
uuuuuuubb22	chr2:176042910-176043188(-)$1	278	153	164	18.5084
ggg!!bbpppp	chr22:32894442-32894824(+)$1	382	107	118	21.4745
ddddppppppp	chr9:75773340-75773597(+)$1	257	56	67	14.5254
[bb!!iiiiii	chr6:31797626-31797877(+)$1	251	46	57	18.5084
gnnnnnggggg	chr16:28848290-28848533(+)$1	243	81	92	15.2033
b]eeeee:HHH	chr1:201103834-201104117(-)$1	283	201	212	15.0338
4ggggggg:JJ	chr3:49396927-49397255(-)$1	328	269	280	13.8474
fffff55555h	chr9:127998651-127998879(-)$1	228	157	168	14.7796
66eeeee22dd	chr2:15770943-15771270(+)$1	327	298	309	14.7796
GGYYEEEEE}D	chrX:151899489-151899764(-)$1	275	215	226	17.9999
FFgggggggll	chr2:44115539-44115831(-)$1	292	273	284	14.7796
ff]ccceeeee	chr9:114124131-114124404(-)$1	273	147	158	15.5423
mffffff]fff	chr4:120987814-120988069(-)$1	255	157	168	18.6779
EEETTTTTTTT	chr1:45976741-45976972(-)$1	231	30	41	17.6610
]ggggggg333	chr1:6245130-6245434(-)$1	304	267	278	15.2033
[bb''''''''	chr12:98994911-98995157(+)$1	246	157	168	17.6610
##dddd!!ddd	chr2:170668290-170668556(+)$1	266	95	106	13.7627
::ffffffccc	chr5:10264923-10265191(+)$1	268	161	172	14.5254
h++++++++++	chr16:56448073-56448346(-)$1	273	35	46	18.2542
:::::::::::	chr1:51820165-51820445(-)$1	280	1	12	14.8644
llccc333ccc	chrX:40465034-40465309(+)$1	275	90	101	15.1186
:::::::::::	chr1:207217229-207217497(-)$1	268	217	228	18.0847
rrhhhhhhhh2	chr18:43666031-43666296(-)$1	265	221	232	14.0169
]ccc333dddd	chr14:24759760-24760131(-)$1	371	243	254	14.8644
========777	chr6:31765239-31765526(-)$1	287	82	93	14.1864
a[cccwwwwww	chr17:38328211-38328473(+)$1	262	130	141	17.2372
fff[dddd"""	chr8:117858120-117858398(-)$1	278	79	90	15.2881
HH______III	chr14:69847010-69847345(-)$1	335	269	280	18.4237
F:::fffffft	chr17:48829721-48829963(+)$1	242	71	82	14.4406
eeee[ddddmm	chr7:30673440-30673709(+)$1	269	222	233	15.0338
bbmmmmbb22d	chr5:145493463-145493758(-)$1	295	192	203	14.8644
wwwwwwwwwww	chr4:57368918-57369213(+)$1	295	154	165	13.5084
===========	chr2:10269538-10269822(+)$1	284	3	14	18.8474
ggggggg))))	chr19:10800089-10800383(+)$1	294	205	216	14.1864
:ccc[gggggg	chr12:16055937-16056240(+)$1	303	203	214	14.4406
c[bbrrrrrrr	chr10:85912255-85912497(+)$1	242	5	16	14.8644
d!!eeeeemmm	chr10:3178719-3179031(+)$1	312	283	294	18.5932
hh%%%%%%ccc	chr14:102547691-102547901(-)$1	210	65	76	16.1355
eeee[dddd[g	chr11:18428875-18429098(+)$1	223	18	29	15.1186
cnnnnnccc]e	chr20:32868166-32868400(-)$1	234	9	20	14.5254
]hhhhhhhh44	chr6:8079825-8080123(-)$1	298	148	159	14.4406
]ffffff]ccc	chr8:100890361-100890594(-)$1	233	62	73	13.9322
:::::::hhhh	chr5:134670371-134670618(-)$1	247	123	134	16.7288
E{EEEEE::::	chr15:85213054-85213329(-)$1	275	13	24	16.7288
{HHHHHHHH:c	chr10:71962796-71963038(-)$1	242	72	83	22.1525
{HHHHHHHH:c	chr10:71962662-71962993(-)$1	331	27	38	22.1525
dd:::::::::	chr8:48685597-48685855(-)$1	258	89	100	21.8135
[dddd[ccc++	chr17:37006343-37006567(-)$1	224	63	74	21.0508
xxxxxxxxxxf	chr2:65495892-65496174(+)$1	282	14	25	15.7118
Dddddqqqqqq	chr11:75114971-75115275(+)$1	304	23	34	18.3389
EEEKKA:::::	chr10:51589297-51589551(+)$1	254	8	19	14.1016
hh%%%%%%ccc	chr14:102547730-102547951(-)$1	221	115	126	16.1355
eeee[dddd[g	chr11:18428831-18429075(+)$1	244	62	73	15.1186
%eeeee!!hhh	chr2:54092421-54092683(-)$1	262	187	198	18.5932
eeee]eeeee:	chr11:64084194-64084412(-)$1	218	94	105	13.3389
uuuuuuubb22	chr2:176042861-176043069(-)$1	208	34	45	18.5084
oooooobb]dd	chr1:145442427-145442644(+)$1	217	79	90	17.3220
=========!!	chr7:56169198-56169449(-)$1	251	139	150	14.7796
fffffff!!dd	chr10:70551042-70551339(+)$1	297	64	75	15.2881

#DB
.......))..	chr2:176042910-176043188(-)$1	1	153	164	18.5084
(((..((....	chr22:32894442-32894824(+)$1	1	107	118	21.4745
((((.......	chr9:75773340-75773597(+)$1	1	56	67	14.5254
.((..((((((	chr6:31797626-31797877(+)$1	1	46	57	18.5084
(.....)))))	chr16:28848290-28848533(+)$1	1	81	92	15.2033
).))))).)))	chr1:201103834-201104117(-)$1	1	201	212	15.0338
.))))))).))	chr3:49396927-49397255(-)$1	1	269	280	13.8474
))))).....)	chr9:127998651-127998879(-)$1	1	157	168	14.7796
..)))))..))	chr2:15770943-15771270(+)$1	1	298	309	14.7796
))..))))).)	chrX:151899489-151899764(-)$1	1	215	226	17.9999
))(((((((..	chr2:44115539-44115831(-)$1	1	273	284	14.7796
)).))))))))	chr9:114124131-114124404(-)$1	1	147	158	15.5423
.)))))).)))	chr4:120987814-120988069(-)$1	1	157	168	18.6779
(((........	chr1:45976741-45976972(-)$1	1	30	41	17.6610
.)))))))...	chr1:6245130-6245434(-)$1	1	267	278	15.2033
.((........	chr12:98994911-98995157(+)$1	1	157	168	17.6610
..((((..(((	chr2:170668290-170668556(+)$1	1	95	106	13.7627
..(((((((((	chr5:10264923-10265191(+)$1	1	161	172	14.5254
(..........	chr16:56448073-56448346(-)$1	1	35	46	18.2542
...........	chr1:51820165-51820445(-)$1	1	1	12	14.8644
..)))...)))	chrX:40465034-40465309(+)$1	1	90	101	15.1186
...........	chr1:207217229-207217497(-)$1	1	217	228	18.0847
..)))))))).	chr18:43666031-43666296(-)$1	1	221	232	14.0169
.)))...))))	chr14:24759760-24760131(-)$1	1	243	254	14.8644
))))))))...	chr6:31765239-31765526(-)$1	1	82	93	14.1864
(.(((......	chr17:38328211-38328473(+)$1	1	130	141	17.2372
(((.((((...	chr8:117858120-117858398(-)$1	1	79	90	15.2881
))......)))	chr14:69847010-69847345(-)$1	1	269	280	18.4237
(...((((((.	chr17:48829721-48829963(+)$1	1	71	82	14.4406
((((.((((..	chr7:30673440-30673709(+)$1	1	222	233	15.0338
((....))..)	chr5:145493463-145493758(-)$1	1	192	203	14.8644
...........	chr4:57368918-57369213(+)$1	1	154	165	13.5084
(((((((((((	chr2:10269538-10269822(+)$1	1	3	14	18.8474
(((((((....	chr19:10800089-10800383(+)$1	1	205	216	14.1864
.(((.((((((	chr12:16055937-16056240(+)$1	1	203	214	14.4406
(.((.......	chr10:85912255-85912497(+)$1	1	5	16	14.8644
(..(((((...	chr10:3178719-3179031(+)$1	1	283	294	18.5932
((......(((	chr14:102547691-102547901(-)$1	1	65	76	16.1355
((((.((((.(	chr11:18428875-18429098(+)$1	1	18	29	15.1186
(.....))).)	chr20:32868166-32868400(-)$1	1	9	20	14.5254
.))))))))..	chr6:8079825-8080123(-)$1	1	148	159	14.4406
.)))))).)))	chr8:100890361-100890594(-)$1	1	62	73	13.9322
.......((((	chr5:134670371-134670618(-)$1	1	123	134	16.7288
(.(((((....	chr15:85213054-85213329(-)$1	1	13	24	16.7288
.((((((((.(	chr10:71962796-71963038(-)$1	1	72	83	22.1525
.((((((((.(	chr10:71962662-71962993(-)$1	1	27	38	22.1525
)).........	chr8:48685597-48685855(-)$1	1	89	100	21.8135
.((((.(((..	chr17:37006343-37006567(-)$1	1	63	74	21.0508
..........)	chr2:65495892-65496174(+)$1	1	14	25	15.7118
(((((......	chr11:75114971-75115275(+)$1	1	23	34	18.3389
(((..(.....	chr10:51589297-51589551(+)$1	1	8	19	14.1016
((......(((	chr14:102547730-102547951(-)$1	1	115	126	16.1355
((((.((((.(	chr11:18428831-18429075(+)$1	1	62	73	15.1186
.(((((..(((	chr2:54092421-54092683(-)$1	1	187	198	18.5932
)))).))))).	chr11:64084194-64084412(-)$1	1	94	105	13.3389
.......))..	chr2:176042861-176043069(-)$1	1	34	45	18.5084
......)).))	chr1:145442427-145442644(+)$1	1	79	90	17.3220
(((((((((..	chr7:56169198-56169449(-)$1	1	139	150	14.7796
(((((((..((	chr10:70551042-70551339(+)$1	1	64	75	15.2881

#PSSM
U : 0.91	A : 0.05	G : 0.01	C : 0.01	
G : 0.79	U : 0.15	C : 0.05	
U : 0.67	C : 0.11	G : 0.11	A : 0.08	
U : 0.86	A : 0.05	C : 0.05	G : 0.01	u : 0.01	
U : 0.84	G : 0.10	A : 0.03	u : 0.01	
U : 0.83	G : 0.11	A : 0.03	u : 0.01	
U : 0.71	A : 0.15	C : 0.08	G : 0.03	u : 0.01	
C : 0.35	U : 0.28	G : 0.22	A : 0.11	a : 0.01	
U : 0.91	C : 0.03	A : 0.01	G : 0.01	u : 0.01	
U : 0.86	C : 0.05	A : 0.05	G : 0.01	u : 0.01	
U : 0.93	G : 0.05	u : 0.01	

#score	963.6101694915245
#seq	59
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_CDS_m2_run2.nuc.txt

#NT
GUG	chr6:99852379-99852676(-)$1	297	208	211	9.0000
GUG	chr9:139700433-139700674(+)$1	241	33	36	9.0000
GUG	chr20:62595850-62596130(-)$1	280	168	171	9.0000
GUG	chr2:242173230-242173468(-)$1	238	3	6	9.0000
GUG	chr10:45465512-45465773(+)$1	261	10	13	9.0000
GUg	chr8:17815026-17815249(+)$1	223	70	73	9.0000
GUG	chr2:54856376-54856599(+)$1	223	41	44	9.0000
GUG	chr16:31200395-31200619(+)$1	224	80	83	9.0000
GUG	chr20:25471910-25472151(-)$1	241	39	42	9.0000
GUG	chr17:56082721-56082935(-)$1	214	177	180	9.0000
GUG	chr12:76442098-76442344(-)$1	246	4	7	9.0000
GUG	chr12:104336823-104337048(+)$1	225	8	11	9.0000
GUG	chr4:24538578-24538892(-)$1	314	2	5	9.0000
GUG	chr20:31024528-31024821(+)$1	293	26	29	9.0000
GUG	chr13:99037929-99038151(+)$1	222	130	133	9.0000
GUG	chr6:44217657-44217865(+)$1	208	100	103	9.0000
GUG	chr2:153484871-153485138(+)$1	267	11	14	9.0000
GUG	chr1:120269532-120269846(+)$1	314	214	217	9.0000
GUG	chr14:31405604-31405901(-)$1	297	79	82	9.0000
GUG	chr16:16138218-16138503(+)$1	285	5	8	9.0000
GUG	chr16:88785857-88786134(-)$1	277	15	18	9.0000
GUG	chr2:9770369-9770667(-)$1	298	170	173	9.0000
GUG	chr19:48982280-48982587(+)$1	307	106	109	9.0000
GUG	chr15:40477345-40477693(+)$1	348	254	257	9.0000
GUG	chr16:2820304-2820566(+)$1	262	0	3	9.0000
GUG	chr14:24607846-24608101(+)$1	255	9	12	9.0000
gug	chr14:102550990-102551283(-)$1	293	99	102	9.0000
GUG	chr14:31605639-31605866(-)$1	227	29	32	9.0000
GUG	chr12:133362902-133363242(-)$1	340	295	298	9.0000
GUG	chr16:58620479-58620724(-)$1	245	27	30	9.0000
GUG	chr2:128262579-128262877(-)$1	298	24	27	9.0000
GUG	chr15:69072334-69072583(-)$1	249	39	42	9.0000
GUG	chr2:96971050-96971346(-)$1	296	63	66	9.0000
GUG	chrX:70779023-70779289(+)$1	266	1	4	9.0000
GUG	chr2:54880712-54880966(+)$1	254	33	36	9.0000
GUG	chr14:89038851-89039250(+)$1	399	18	21	9.0000
GUG	chr17:15960761-15961040(-)$1	279	97	100	9.0000
GUG	chr20:25457021-25457257(-)$1	236	45	48	9.0000
GUG	chr2:201722593-201722832(-)$1	239	57	60	9.0000
GUG	chr17:45755597-45755868(+)$1	271	35	38	9.0000
GUG	chr19:8531027-8531319(+)$1	292	38	41	9.0000
GUG	chr2:220099823-220100082(+)$1	259	44	47	9.0000
GUG	chr9:127623671-127623927(-)$1	256	38	41	9.0000
GUG	chr1:8684268-8684505(-)$1	237	69	72	9.0000
GUG	chr4:39929542-39929809(-)$1	267	3	6	9.0000
GUG	chr19:39963359-39963620(+)$1	261	13	16	9.0000
GUG	chr5:135382382-135382712(+)$1	330	17	20	9.0000
GUG	chr14:102452220-102452492(+)$1	272	19	22	9.0000
GUG	chr5:73168740-73169091(+)$1	351	1	4	9.0000
GUG	chr16:67976857-67977109(-)$1	252	44	47	9.0000
GUG	chr15:93528704-93529005(+)$1	301	39	42	9.0000
GUG	chr2:242206172-242206421(-)$1	249	99	102	9.0000
GUG	chr7:26233096-26233354(-)$1	258	10	13	9.0000
GUG	chr18:697138-697412(-)$1	274	63	66	9.0000
GUG	chr16:18845527-18845818(-)$1	291	78	81	9.0000
GUG	chr2:102476163-102476425(+)$1	262	227	230	9.0000
GUG	chr20:34218949-34219181(-)$1	232	116	119	9.0000
GUG	chr8:17822103-17822357(+)$1	254	3	6	9.0000
GUG	chr5:14397069-14397359(+)$1	290	93	96	9.0000
GUG	chr12:26839317-26839555(-)$1	238	193	196	9.0000
GUG	chr6:168291503-168291745(+)$1	242	206	209	9.0000
GUG	chr2:63091966-63092200(+)$1	234	24	27	9.0000
GUG	chr16:89347810-89348084(-)$1	274	152	155	9.0000
GUG	chr20:34309567-34309798(-)$1	231	48	51	9.0000
GUG	chr14:90867500-90867832(+)$1	332	40	43	9.0000
GUG	chr11:70858062-70858302(-)$1	240	66	69	9.0000
GUG	chr5:179048137-179048374(-)$1	237	39	42	9.0000
GUG	chr9:116999883-117000095(+)$1	212	12	15	9.0000
GUG	chr2:102441682-102441923(+)$1	241	78	81	9.0000
GUG	chr9:117026538-117026785(+)$1	247	68	71	9.0000
GUG	chr9:139700484-139700721(+)$1	237	112	115	9.0000
GUG	chr20:39791181-39791426(+)$1	245	184	187	9.0000
GUG	chr14:23792526-23792770(+)$1	244	29	32	9.0000
GUG	chr2:54858546-54858750(+)$1	204	108	111	9.0000
GUG	chr14:39646697-39646959(+)$1	262	221	224	9.0000
GUG	chr19:55753428-55753718(-)$1	290	139	142	9.0000
GUG	chr20:39792667-39792917(+)$1	250	36	39	9.0000
GUG	chr19:5626318-5626600(+)$1	282	48	51	9.0000
GUG	chr20:39802688-39802921(+)$1	233	29	32	9.0000
GUG	chr16:18850919-18851211(-)$1	292	54	57	9.0000
GUG	chr12:76444236-76444452(-)$1	216	74	77	9.0000
GUG	chr9:139733645-139733987(+)$1	342	102	105	9.0000
GUG	chr17:65850347-65850657(+)$1	310	69	72	9.0000
GUG	chr16:23502903-23503152(-)$1	249	172	175	9.0000
GUG	chr2:232321253-232321529(-)$1	276	0	3	9.0000
GUG	chr1:214169851-214170184(+)$1	333	24	27	9.0000
GUG	chr20:30385158-30385412(+)$1	254	9	12	9.0000
GUG	chr10:135215573-135215833(+)$1	260	18	21	9.0000
GUG	chr6:76343196-76343488(+)$1	292	137	140	9.0000
GUG	chr6:24278248-24278534(-)$1	286	132	135	9.0000
GUG	chr2:242206154-242206372(-)$1	218	50	53	9.0000
GUG	chr2:62934272-62934503(+)$1	231	36	39	9.0000
GUG	chr2:153435305-153435552(+)$1	247	65	68	9.0000
GUG	chr7:133041024-133041424(+)$1	400	58	61	9.0000

#otherMatches

#Struct PSSM
eee	chr20:2819574-2819822(-)$1	248	11	14	9.0000
ddd	chr6:99852379-99852676(-)$1	297	208	211	9.0000
e]a	chr9:139700433-139700674(+)$1	241	33	36	9.0000
ggd	chr20:62595850-62596130(-)$1	280	168	171	9.0000
{FF	chr2:242173230-242173468(-)$1	238	3	6	9.0000
$$$	chr10:45465512-45465773(+)$1	261	10	13	9.0000
ddd	chr8:17815026-17815249(+)$1	223	70	73	9.0000
ooo	chr2:54856376-54856599(+)$1	223	41	44	9.0000
ccc	chr16:31200395-31200619(+)$1	224	80	83	9.0000
EEE	chr20:25471910-25472151(-)$1	241	39	42	9.0000
FFF	chr17:56082721-56082935(-)$1	214	177	180	9.0000
fff	chr12:76442098-76442344(-)$1	246	4	7	9.0000
JJJ	chr12:104336823-104337048(+)$1	225	8	11	9.0000
::d	chr4:24538578-24538892(-)$1	314	2	5	9.0000
cff	chr20:31024528-31024821(+)$1	293	26	29	9.0000
ddd	chr13:99037929-99038151(+)$1	222	130	133	9.0000
JJJ	chr6:44217657-44217865(+)$1	208	100	103	9.0000
:::	chr2:153484871-153485138(+)$1	267	11	14	9.0000
qqq	chr1:120269532-120269846(+)$1	314	214	217	9.0000
d[f	chr14:31405604-31405901(-)$1	297	79	82	9.0000
dpp	chr16:16138218-16138503(+)$1	285	5	8	9.0000
fff	chr16:88785857-88786134(-)$1	277	15	18	9.0000
d::	chr2:9770369-9770667(-)$1	298	170	173	9.0000
ee[	chr19:48982280-48982587(+)$1	307	106	109	9.0000
cc[	chr15:40477345-40477693(+)$1	348	254	257	9.0000
:bb	chr16:2820304-2820566(+)$1	262	0	3	9.0000
ddo	chr14:24607846-24608101(+)$1	255	9	12	9.0000
^^^	chr14:102550990-102551283(-)$1	293	99	102	9.0000
eee	chr14:31605639-31605866(-)$1	227	29	32	9.0000
ppp	chr12:133362902-133363242(-)$1	340	295	298	9.0000
ooc	chr16:58620479-58620724(-)$1	245	27	30	9.0000
ee#	chr2:128262579-128262877(-)$1	298	24	27	9.0000
CCF	chr15:69072334-69072583(-)$1	249	39	42	9.0000
H{B	chr2:96971050-96971346(-)$1	296	63	66	9.0000
DDD	chrX:70779023-70779289(+)$1	266	1	4	9.0000
mff	chr2:54880712-54880966(+)$1	254	33	36	9.0000
:::	chr14:89038851-89039250(+)$1	399	18	21	9.0000
iii	chr17:15960761-15961040(-)$1	279	97	100	9.0000
FFF	chr20:25457021-25457257(-)$1	236	45	48	9.0000
zzz	chr2:201722593-201722832(-)$1	239	57	60	9.0000
:::	chr17:45755597-45755868(+)$1	271	35	38	9.0000
D{F	chr19:8531027-8531319(+)$1	292	38	41	9.0000
!cc	chr2:220099823-220100082(+)$1	259	44	47	9.0000
ee"	chr9:127623671-127623927(-)$1	256	38	41	9.0000
a]b	chr1:8684268-8684505(-)$1	237	69	72	9.0000
ddd	chr4:39929542-39929809(-)$1	267	3	6	9.0000
www	chr19:39963359-39963620(+)$1	261	13	16	9.0000
DDG	chr5:135382382-135382712(+)$1	330	17	20	9.0000
fff	chr14:102452220-102452492(+)$1	272	19	22	9.0000
::c	chr5:73168740-73169091(+)$1	351	1	4	9.0000
hhh	chr16:67976857-67977109(-)$1	252	44	47	9.0000
FFF	chr15:93528704-93529005(+)$1	301	39	42	9.0000
d]d	chr2:242206172-242206421(-)$1	249	99	102	9.0000
FFF	chr7:26233096-26233354(-)$1	258	10	13	9.0000
fff	chr18:697138-697412(-)$1	274	63	66	9.0000
dd[	chr16:18845527-18845818(-)$1	291	78	81	9.0000
DDE	chr2:102476163-102476425(+)$1	262	227	230	9.0000
:ff	chr20:34218949-34219181(-)$1	232	116	119	9.0000
C{D	chr8:17822103-17822357(+)$1	254	3	6	9.0000
2a]	chr5:14397069-14397359(+)$1	290	93	96	9.0000
ccD	chr12:26839317-26839555(-)$1	238	193	196	9.0000
EE}	chr6:168291503-168291745(+)$1	242	206	209	9.0000
DDD	chr2:63091966-63092200(+)$1	234	24	27	9.0000
fff	chr16:89347810-89348084(-)$1	274	152	155	9.0000
4ee	chr20:34309567-34309798(-)$1	231	48	51	9.0000
dff	chr14:90867500-90867832(+)$1	332	40	43	9.0000
eec	chr11:70858062-70858302(-)$1	240	66	69	9.0000
mmb	chr5:179048137-179048374(-)$1	237	39	42	9.0000
cce	chr9:116999883-117000095(+)$1	212	12	15	9.0000
iii	chr2:102441682-102441923(+)$1	241	78	81	9.0000
ii[	chr9:117026538-117026785(+)$1	247	68	71	9.0000
[dd	chr9:139700484-139700721(+)$1	237	112	115	9.0000
eee	chr20:39791181-39791426(+)$1	245	184	187	9.0000
DDD	chr14:23792526-23792770(+)$1	244	29	32	9.0000
hhh	chr2:54858546-54858750(+)$1	204	108	111	9.0000
DDD	chr14:39646697-39646959(+)$1	262	221	224	9.0000
hhh	chr19:55753428-55753718(-)$1	290	139	142	9.0000
III	chr20:39792667-39792917(+)$1	250	36	39	9.0000
ddo	chr19:5626318-5626600(+)$1	282	48	51	9.0000
eee	chr20:39802688-39802921(+)$1	233	29	32	9.0000
cce	chr16:18850919-18851211(-)$1	292	54	57	9.0000
ddd	chr12:76444236-76444452(-)$1	216	74	77	9.0000
b[d	chr9:139733645-139733987(+)$1	342	102	105	9.0000
ff3	chr17:65850347-65850657(+)$1	310	69	72	9.0000
fff	chr16:23502903-23503152(-)$1	249	172	175	9.0000
:::	chr2:232321253-232321529(-)$1	276	0	3	9.0000
%%%	chr1:214169851-214170184(+)$1	333	24	27	9.0000
ggg	chr20:30385158-30385412(+)$1	254	9	12	9.0000
nnb	chr10:135215573-135215833(+)$1	260	18	21	9.0000
CC:	chr6:76343196-76343488(+)$1	292	137	140	9.0000
:::	chr6:24278248-24278534(-)$1	286	132	135	9.0000
d]d	chr2:242206154-242206372(-)$1	218	50	53	9.0000
ddo	chr2:62934272-62934503(+)$1	231	36	39	9.0000
DDD	chr2:153435305-153435552(+)$1	247	65	68	9.0000
fff	chr7:133041024-133041424(+)$1	400	58	61	9.0000

#DB
)))	chr20:2819574-2819822(-)$1	1	11	14	9.0000
)))	chr6:99852379-99852676(-)$1	1	208	211	9.0000
).)	chr9:139700433-139700674(+)$1	1	33	36	9.0000
))(	chr20:62595850-62596130(-)$1	1	168	171	9.0000
.((	chr2:242173230-242173468(-)$1	1	3	6	9.0000
...	chr10:45465512-45465773(+)$1	1	10	13	9.0000
(((	chr8:17815026-17815249(+)$1	1	70	73	9.0000
...	chr2:54856376-54856599(+)$1	1	41	44	9.0000
)))	chr16:31200395-31200619(+)$1	1	80	83	9.0000
(((	chr20:25471910-25472151(-)$1	1	39	42	9.0000
)))	chr17:56082721-56082935(-)$1	1	177	180	9.0000
(((	chr12:76442098-76442344(-)$1	1	4	7	9.0000
(((	chr12:104336823-104337048(+)$1	1	8	11	9.0000
..(	chr4:24538578-24538892(-)$1	1	2	5	9.0000
)((	chr20:31024528-31024821(+)$1	1	26	29	9.0000
(((	chr13:99037929-99038151(+)$1	1	130	133	9.0000
(((	chr6:44217657-44217865(+)$1	1	100	103	9.0000
...	chr2:153484871-153485138(+)$1	1	11	14	9.0000
...	chr1:120269532-120269846(+)$1	1	214	217	9.0000
(.(	chr14:31405604-31405901(-)$1	1	79	82	9.0000
(..	chr16:16138218-16138503(+)$1	1	5	8	9.0000
(((	chr16:88785857-88786134(-)$1	1	15	18	9.0000
)..	chr2:9770369-9770667(-)$1	1	170	173	9.0000
((.	chr19:48982280-48982587(+)$1	1	106	109	9.0000
((.	chr15:40477345-40477693(+)$1	1	254	257	9.0000
.((	chr16:2820304-2820566(+)$1	1	0	3	9.0000
((.	chr14:24607846-24608101(+)$1	1	9	12	9.0000
...	chr14:102550990-102551283(-)$1	1	99	102	9.0000
(((	chr14:31605639-31605866(-)$1	1	29	32	9.0000
...	chr12:133362902-133363242(-)$1	1	295	298	9.0000
..)	chr16:58620479-58620724(-)$1	1	27	30	9.0000
((.	chr2:128262579-128262877(-)$1	1	24	27	9.0000
(((	chr15:69072334-69072583(-)$1	1	39	42	9.0000
(.(	chr2:96971050-96971346(-)$1	1	63	66	9.0000
(((	chrX:70779023-70779289(+)$1	1	1	4	9.0000
.))	chr2:54880712-54880966(+)$1	1	33	36	9.0000
...	chr14:89038851-89039250(+)$1	1	18	21	9.0000
)))	chr17:15960761-15961040(-)$1	1	97	100	9.0000
(((	chr20:25457021-25457257(-)$1	1	45	48	9.0000
...	chr2:201722593-201722832(-)$1	1	57	60	9.0000
...	chr17:45755597-45755868(+)$1	1	35	38	9.0000
(.(	chr19:8531027-8531319(+)$1	1	38	41	9.0000
.((	chr2:220099823-220100082(+)$1	1	44	47	9.0000
((.	chr9:127623671-127623927(-)$1	1	38	41	9.0000
).)	chr1:8684268-8684505(-)$1	1	69	72	9.0000
(((	chr4:39929542-39929809(-)$1	1	3	6	9.0000
...	chr19:39963359-39963620(+)$1	1	13	16	9.0000
(((	chr5:135382382-135382712(+)$1	1	17	20	9.0000
(((	chr14:102452220-102452492(+)$1	1	19	22	9.0000
..(	chr5:73168740-73169091(+)$1	1	1	4	9.0000
(((	chr16:67976857-67977109(-)$1	1	44	47	9.0000
(((	chr15:93528704-93529005(+)$1	1	39	42	9.0000
).)	chr2:242206172-242206421(-)$1	1	99	102	9.0000
(((	chr7:26233096-26233354(-)$1	1	10	13	9.0000
)))	chr18:697138-697412(-)$1	1	63	66	9.0000
((.	chr16:18845527-18845818(-)$1	1	78	81	9.0000
)))	chr2:102476163-102476425(+)$1	1	227	230	9.0000
.((	chr20:34218949-34219181(-)$1	1	116	119	9.0000
(.(	chr8:17822103-17822357(+)$1	1	3	6	9.0000
.).	chr5:14397069-14397359(+)$1	1	93	96	9.0000
)))	chr12:26839317-26839555(-)$1	1	193	196	9.0000
)).	chr6:168291503-168291745(+)$1	1	206	209	9.0000
(((	chr2:63091966-63092200(+)$1	1	24	27	9.0000
)))	chr16:89347810-89348084(-)$1	1	152	155	9.0000
.))	chr20:34309567-34309798(-)$1	1	48	51	9.0000
)))	chr14:90867500-90867832(+)$1	1	40	43	9.0000
)))	chr11:70858062-70858302(-)$1	1	66	69	9.0000
..)	chr5:179048137-179048374(-)$1	1	39	42	9.0000
(((	chr9:116999883-117000095(+)$1	1	12	15	9.0000
)))	chr2:102441682-102441923(+)$1	1	78	81	9.0000
((.	chr9:117026538-117026785(+)$1	1	68	71	9.0000
.((	chr9:139700484-139700721(+)$1	1	112	115	9.0000
)))	chr20:39791181-39791426(+)$1	1	184	187	9.0000
(((	chr14:23792526-23792770(+)$1	1	29	32	9.0000
(((	chr2:54858546-54858750(+)$1	1	108	111	9.0000
)))	chr14:39646697-39646959(+)$1	1	221	224	9.0000
(((	chr19:55753428-55753718(-)$1	1	139	142	9.0000
(((	chr20:39792667-39792917(+)$1	1	36	39	9.0000
((.	chr19:5626318-5626600(+)$1	1	48	51	9.0000
(((	chr20:39802688-39802921(+)$1	1	29	32	9.0000
))(	chr16:18850919-18851211(-)$1	1	54	57	9.0000
)))	chr12:76444236-76444452(-)$1	1	74	77	9.0000
(.(	chr9:139733645-139733987(+)$1	1	102	105	9.0000
)).	chr17:65850347-65850657(+)$1	1	69	72	9.0000
)))	chr16:23502903-23503152(-)$1	1	172	175	9.0000
...	chr2:232321253-232321529(-)$1	1	0	3	9.0000
...	chr1:214169851-214170184(+)$1	1	24	27	9.0000
(((	chr20:30385158-30385412(+)$1	1	9	12	9.0000
..)	chr10:135215573-135215833(+)$1	1	18	21	9.0000
((.	chr6:76343196-76343488(+)$1	1	137	140	9.0000
...	chr6:24278248-24278534(-)$1	1	132	135	9.0000
).)	chr2:242206154-242206372(-)$1	1	50	53	9.0000
((.	chr2:62934272-62934503(+)$1	1	36	39	9.0000
(((	chr2:153435305-153435552(+)$1	1	65	68	9.0000
)))	chr7:133041024-133041424(+)$1	1	58	61	9.0000

#PSSM
G : 0.98	g : 0.01	
U : 0.98	u : 0.01	
G : 0.97	g : 0.02	

#score	855.0000000000002
#seq	95
#width	3
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_CDS_m2_run2.nuc.txt

#NT
AGGUCGCGGC	chr1:110950106-110950397(-)$1	291	222	232	15.5660
AGGAGGCCGC	chr22:50873157-50873540(+)$1	383	203	213	15.0943
GGGCGGCGGC	chr13:115000355-115000702(+)$1	347	93	103	21.1320
AGCCGGGGGC	chr6:32157579-32157840(-)$1	261	23	33	14.7169
AGGCGGCGAG	chr16:75498330-75498611(-)$1	281	31	41	14.6226
AGGAGGCGGA	chr2:54197781-54198040(-)$1	259	42	52	15.3773
AGGCUGGGGC	chr12:122186016-122186340(+)$1	324	136	146	15.0943
agcgggcggc	chr16:2301217-2301494(-)$1	277	100	110	14.9999
UGGCGACGGC	chr1:184020856-184021123(+)$1	267	104	114	15.9433
GGGCGGCGGG	chr17:75315708-75315988(+)$1	280	246	256	17.1698
AGGCGGGGCC	chr11:207198-207462(-)$1	264	24	34	14.7169
aggagguggc	chr17:34171710-34172052(+)$1	342	17	27	16.1320
aggcggcggg	chr5:137688347-137688603(+)$1	256	98	108	18.7735
CGGCUGCGGC	chr6:43196897-43197203(-)$1	306	141	151	16.5094
gggcggcggc	chrX:153714774-153715017(-)$1	243	26	36	21.1320
gggcggcggc	chr14:96001321-96001588(+)$1	267	212	222	21.1320
aggcggcggg	chr1:233749793-233750159(+)$1	366	63	73	18.7735
aggcggcggc	chr7:65338240-65338499(+)$1	259	93	103	22.7358
gggcggcggc	chr14:96001388-96001660(+)$1	272	145	155	21.1320
gggcggcggc	chr2:220043020-220043333(+)$1	313	32	42	21.1320
GGGCGGCGGC	chr8:15397783-15398069(+)$1	286	195	205	21.1320
UGGCGGCGGC	chr13:22178023-22178318(-)$1	295	32	42	20.5660
AGGCUGUGGC	chr14:77924354-77924698(+)$1	344	126	136	15.0943
aggcggcggc	chr10:98346473-98346743(-)$1	270	76	86	22.7358
gggaggcggc	chr16:30905081-30905351(-)$1	270	38	48	18.1132
cggcggcggc	chr1:6845435-6845745(+)$1	310	74	84	20.5660
AGGUGGUGGC	chr19:44118326-44118659(-)$1	333	294	304	16.1320
GGGCAGCGGC	chr1:156024536-156024810(+)$1	274	77	87	16.9811
GGGCGGCGGC	chr12:96252735-96252955(+)$1	220	63	73	21.1320
AGGCGGAGGC	chr2:171785700-171786016(+)$1	316	271	281	19.0566
AGGCGGUAGC	chr19:6772669-6772982(+)$1	313	138	148	14.6226
CGGCGGCGAC	chr4:57301455-57301780(-)$1	325	127	137	16.4150
AGGCGGGGAC	chr3:48642031-48642314(-)$1	283	248	258	14.9999
GGGUGGCGGC	chr8:25315623-25315952(-)$1	329	152	162	18.1132
AGGCGCCGGC	chr18:44702510-44702731(-)$1	221	2	12	18.2075
AGGCGGCGGC	chr16:730440-730711(+)$1	271	215	225	22.7358
AGGAGCCGGC	chr8:98788087-98788348(+)$1	261	57	67	15.1886
cggcggcggc	chr19:39138225-39138529(+)$1	304	85	95	20.5660
AGCUggcggc	chr9:139581623-139581952(-)$1	329	110	120	15.2830
UGGCGGCGGC	chr19:47634055-47634387(+)$1	332	152	162	20.5660
AGGAGGCAgc	chr19:1407575-1407876(+)$1	301	35	45	15.1886
UGGUGGCGGC	chr1:47133814-47134082(-)$1	268	101	111	17.5471
AGGUGGAGGC	chr19:40331001-40331256(-)$1	255	99	109	16.0377
CGGCGGCGGC	chr22:32340614-32340832(+)$1	218	6	16	20.5660
GGGCCGCGGC	chr22:21996532-21996870(+)$1	338	33	43	16.9811
aggcggcggc	chr19:1592442-1592778(-)$1	336	78	88	22.7358
UGGCGGCGGC	chr4:53245-53488(+)$1	243	200	210	20.5660
UGGCAGCGGC	chr9:37784677-37784988(-)$1	311	225	235	16.4150
CGGCGGCGGC	chr4:26322477-26322784(+)$1	307	30	40	20.5660
agggggcggg	chr12:22199105-22199464(+)$1	359	7	17	15.4716
AGGGGGAGGC	chr7:100283780-100284052(-)$1	272	105	115	15.7547
AGGCGGCGAC	chr5:172410828-172411071(+)$1	243	24	34	18.5849

#otherMatches

#Struct PSSM
"""hhhhhhh	chr9:100818962-100819254(+)$1	292	65	75	22.7358
dddd!!aooo	chr1:110950106-110950397(-)$1	291	222	232	15.5660
]ddddcccEE	chr22:50873157-50873540(+)$1	383	203	213	15.0943
[ccc[bbmmm	chr13:115000355-115000702(+)$1	347	93	103	21.1320
uuggggggge	chr6:32157579-32157840(-)$1	261	23	33	14.7169
EEEEE{BB{E	chr16:75498330-75498611(-)$1	281	31	41	14.6226
pppppccc::	chr2:54197781-54198040(-)$1	259	42	52	15.3773
nnccc333dd	chr12:122186016-122186340(+)$1	324	136	146	15.0943
EEEEdddd[c	chr16:2301217-2301494(-)$1	277	100	110	14.9999
!!a[gggggg	chr1:184020856-184021123(+)$1	267	104	114	15.9433
G}A}CCCYYD	chr17:75315708-75315988(+)$1	280	246	256	17.1698
[ccclllccc	chr11:207198-207462(-)$1	264	24	34	14.7169
]bb::HHHHH	chr17:34171710-34172052(+)$1	342	17	27	16.1320
!bb[ccc[cc	chr5:137688347-137688603(+)$1	256	98	108	18.7735
ggggggg[cc	chr6:43196897-43197203(-)$1	306	141	151	16.5094
!ccca[ccca	chrX:153714774-153715017(-)$1	243	26	36	21.1320
DDDD}BB}JJ	chr14:96001321-96001588(+)$1	267	212	222	21.1320
$dddd[bb[b	chr1:233749793-233750159(+)$1	366	63	73	18.7735
::ffffff[e	chr7:65338240-65338499(+)$1	259	93	103	22.7358
DDDD}BB}JJ	chr14:96001388-96001660(+)$1	272	145	155	21.1320
ddddahhhhh	chr2:220043020-220043333(+)$1	313	32	42	21.1320
==========	chr8:15397783-15398069(+)$1	286	195	205	21.1320
ppcccggggg	chr13:22178023-22178318(-)$1	295	32	42	20.5660
IIIII{EEEE	chr14:77924354-77924698(+)$1	344	126	136	15.0943
pppppbb]ee	chr10:98346473-98346743(-)$1	270	76	86	22.7358
ddd[ammmma	chr16:30905081-30905351(-)$1	270	38	48	18.1132
b[bb[bb[bb	chr1:6845435-6845745(+)$1	310	74	84	20.5660
[bb[ffffff	chr19:44118326-44118659(-)$1	333	294	304	16.1320
ffffmmmmff	chr1:156024536-156024810(+)$1	274	77	87	16.9811
eeeemmmmee	chr12:96252735-96252955(+)$1	220	63	73	21.1320
Ebb[dddd[c	chr2:171785700-171786016(+)$1	316	271	281	19.0566
:cccmmmmcc	chr19:6772669-6772982(+)$1	313	138	148	14.6226
lccceeeee!	chr4:57301455-57301780(-)$1	325	127	137	16.4150
FFFFYYEEEE	chr3:48642031-48642314(-)$1	283	248	258	14.9999
000a]bb22c	chr8:25315623-25315952(-)$1	329	152	162	18.1132
FFFFLLLFFF	chr18:44702510-44702731(-)$1	221	2	12	18.2075
!!ccc[eeee	chr16:730440-730711(+)$1	271	215	225	22.7358
KBBCCCBBHH	chr8:98788087-98788348(+)$1	261	57	67	15.1886
b]bb::a[dd	chr19:39138225-39138529(+)$1	304	85	95	20.5660
333cccgggg	chr9:139581623-139581952(-)$1	329	110	120	15.2830
ddbb[bb!!a	chr19:47634055-47634387(+)$1	332	152	162	20.5660
fff"""bb[d	chr19:1407575-1407876(+)$1	301	35	45	15.1886
:DDDDHHHHH	chr1:47133814-47134082(-)$1	268	101	111	17.5471
4bb]======	chr19:40331001-40331256(-)$1	255	99	109	16.0377
FFFFKKGGGG	chr22:32340614-32340832(+)$1	218	6	16	20.5660
ggggg[ccc[	chr22:21996532-21996870(+)$1	338	33	43	16.9811
{BB{BBMMMM	chr19:1592442-1592778(-)$1	336	78	88	22.7358
ZZBBiiiiii	chr4:53245-53488(+)$1	243	200	210	20.5660
eeee]a]fff	chr9:37784677-37784988(-)$1	311	225	235	16.4150
a[bb!!dddd	chr4:26322477-26322784(+)$1	307	30	40	20.5660
F::a[ccc[c	chr12:22199105-22199464(+)$1	359	7	17	15.4716
eeeeqqqqqq	chr7:100283780-100284052(-)$1	272	105	115	15.7547
mmccc]eeee	chr5:172410828-172411071(+)$1	243	24	34	18.5849

#DB
...(((((((	chr9:100818962-100819254(+)$1	1	65	75	22.7358
((((..(...	chr1:110950106-110950397(-)$1	1	222	232	15.5660
.)))))))))	chr22:50873157-50873540(+)$1	1	203	213	15.0943
.(((.((...	chr13:115000355-115000702(+)$1	1	93	103	21.1320
..)))))))(	chr6:32157579-32157840(-)$1	1	23	33	14.7169
(((((.((.(	chr16:75498330-75498611(-)$1	1	31	41	14.6226
.....)))..	chr2:54197781-54198040(-)$1	1	42	52	15.3773
..)))...))	chr12:122186016-122186340(+)$1	1	136	146	15.0943
((((((((.(	chr16:2301217-2301494(-)$1	1	100	110	14.9999
..(.((((((	chr1:184020856-184021123(+)$1	1	104	114	15.9433
).).)))..)	chr17:75315708-75315988(+)$1	1	246	256	17.1698
.(((...)))	chr11:207198-207462(-)$1	1	24	34	14.7169
.))..(((((	chr17:34171710-34172052(+)$1	1	17	27	16.1320
.((.(((.((	chr5:137688347-137688603(+)$1	1	98	108	18.7735
(((((((.((	chr6:43196897-43197203(-)$1	1	141	151	16.5094
.((((.((((	chrX:153714774-153715017(-)$1	1	26	36	21.1320
)))).)).))	chr14:96001321-96001588(+)$1	1	212	222	21.1320
.((((.((.(	chr1:233749793-233750159(+)$1	1	63	73	18.7735
..((((((.(	chr7:65338240-65338499(+)$1	1	93	103	22.7358
)))).)).))	chr14:96001388-96001660(+)$1	1	145	155	21.1320
))))))))))	chr2:220043020-220043333(+)$1	1	32	42	21.1320
((((((((((	chr8:15397783-15398069(+)$1	1	195	205	21.1320
..)))(((((	chr13:22178023-22178318(-)$1	1	32	42	20.5660
(((((.((((	chr14:77924354-77924698(+)$1	1	126	136	15.0943
.....)).))	chr10:98346473-98346743(-)$1	1	76	86	22.7358
(((.(....)	chr16:30905081-30905351(-)$1	1	38	48	18.1132
(.((.((.((	chr1:6845435-6845745(+)$1	1	74	84	20.5660
.((.((((((	chr19:44118326-44118659(-)$1	1	294	304	16.1320
((((....))	chr1:156024536-156024810(+)$1	1	77	87	16.9811
((((....))	chr12:96252735-96252955(+)$1	1	63	73	21.1320
)((.((((.(	chr2:171785700-171786016(+)$1	1	271	281	19.0566
.(((....))	chr19:6772669-6772982(+)$1	1	138	148	14.6226
.)))(((((.	chr4:57301455-57301780(-)$1	1	127	137	16.4150
))))..))))	chr3:48642031-48642314(-)$1	1	248	258	14.9999
...).))..)	chr8:25315623-25315952(-)$1	1	152	162	18.1132
((((...(((	chr18:44702510-44702731(-)$1	1	2	12	18.2075
..(((.((((	chr16:730440-730711(+)$1	1	215	225	22.7358
.(((((((((	chr8:98788087-98788348(+)$1	1	57	67	15.1886
).))..(.((	chr19:39138225-39138529(+)$1	1	85	95	20.5660
...)))((((	chr9:139581623-139581952(-)$1	1	110	120	15.2830
((((.((..(	chr19:47634055-47634387(+)$1	1	152	162	20.5660
(((...((.(	chr19:1407575-1407876(+)$1	1	35	45	15.1886
.(((((((((	chr1:47133814-47134082(-)$1	1	101	111	17.5471
.)).))))))	chr19:40331001-40331256(-)$1	1	99	109	16.0377
((((..((((	chr22:32340614-32340832(+)$1	1	6	16	20.5660
(((((.(((.	chr22:21996532-21996870(+)$1	1	33	43	16.9811
.((.((....	chr19:1592442-1592778(-)$1	1	78	88	22.7358
..))((((((	chr4:53245-53488(+)$1	1	200	210	20.5660
)))).).)))	chr9:37784677-37784988(-)$1	1	225	235	16.4150
(.((..((((	chr4:26322477-26322784(+)$1	1	30	40	20.5660
(..(.(((.(	chr12:22199105-22199464(+)$1	1	7	17	15.4716
((((......	chr7:100283780-100284052(-)$1	1	105	115	15.7547
..))).))))	chr5:172410828-172411071(+)$1	1	24	34	18.5849

#PSSM
A : 0.39	a : 0.15	G : 0.13	U : 0.11	g : 0.09	C : 0.07	c : 0.03	
G : 0.69	g : 0.30	
G : 0.66	g : 0.28	C : 0.03	c : 0.01	
C : 0.49	c : 0.22	U : 0.11	A : 0.07	g : 0.03	a : 0.03	G : 0.01	
G : 0.54	g : 0.32	U : 0.05	C : 0.03	A : 0.03	
G : 0.62	g : 0.32	C : 0.03	A : 0.01	
C : 0.49	c : 0.30	G : 0.07	U : 0.05	A : 0.05	u : 0.01	
G : 0.62	g : 0.32	A : 0.03	C : 0.01	
G : 0.56	g : 0.33	A : 0.07	C : 0.01	
C : 0.60	c : 0.28	g : 0.05	G : 0.03	A : 0.01	

#score	959.2452830188676
#seq	53
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_UTR_m2_run1.nuc.txt

#NT
GAGCAGGGUCUGGG	chr1:52825790-52826170(-)$1	380	208	222	17.2083
GGGCCGGGGAUGGG	chr14:23791040-23791278(+)$1	238	119	133	25.6458
gggccugggauggg	chr19:2096734-2097022(+)$1	288	60	74	22.4166
GGGAAGGGGGUGGC	chr19:50817471-50817793(-)$1	322	118	132	16.0625
cggCCGGGCCUGGG	chr6:29600649-29600926(-)$1	277	240	254	19.2916
GGGCGGUGGAGGGG	chr9:139743352-139743703(+)$1	351	18	32	19.1875
GGACUGGGGAAGGG	chr1:36787596-36787852(+)$1	256	146	160	17.9375
GGGGCGGGGAAGGC	chr9:139905445-139905712(-)$1	267	89	103	16.7916
GUUCAGGGGCUGGG	chr11:18034093-18034427(-)$1	334	8	22	16.5833
ggGCCUUGCAUGGG	chr3:100428664-100428950(+)$1	286	94	108	15.0208
cggcgggggcucgg	chr9:80646036-80646322(-)$1	286	59	73	16.4791
gggcccgggcgggg	chr16:28222743-28223010(-)$1	267	15	29	21.8958
gggcccggggcggg	chr2:242447505-242447838(-)$1	333	36	50	19.1875
GGGCGGCGGCGGGG	chr12:133405159-133405416(-)$1	257	116	130	19.8125
GGGUGAGGGGUGGG	chr19:50815919-50816230(-)$1	311	70	84	16.1666
CAGCAGGGGCGGGG	chr19:50880574-50880931(+)$1	357	40	54	16.6875
GGCCAAGGGAGGGG	chr19:7978275-7978589(+)$1	314	32	46	16.0625
CAGCAGGGGCGGGG	chr19:50880484-50880737(+)$1	253	130	144	16.6875
ggggagggaaaggg	chr6:29571107-29571370(-)$1	263	80	94	15.7500
UGGCCAGGGGUGGG	chr20:60709719-60709989(+)$1	270	100	114	17.8333
GGGACGAGGAGGGG	chr17:7815311-7815595(+)$1	284	82	96	17.7291
gggccggggcuggg	chr4:2935863-2936146(-)$1	283	85	99	26.2708
AGGCUGGGAAAGGG	chr6:31938137-31938452(-)$1	315	110	124	14.6041
GGACUGGGGAAGGG	chr1:36787722-36787988(+)$1	266	20	34	17.9375
GGGCCGUGGUGGUG	chr10:75578180-75578512(-)$1	332	190	204	14.7083
GGGCAGGGGCUGGG	chr9:35690431-35690702(-)$1	271	88	102	24.9166
GGGCCUGUGCUGGG	chr1:155883679-155883970(-)$1	291	136	150	18.7708
GGGACGCGGCGGGG	chr11:208996-209303(+)$1	307	51	65	18.3541
GGGCGCGGGGUGGG	chr4:726046-726330(+)$1	284	17	31	19.6041
GGAUCUGGGCUGGG	chr3:128205802-128206058(-)$1	256	38	52	15.5416
UGGAGGGGGAGGGG	chr2:64068081-64068414(+)$1	333	43	57	16.0625
ggggaggggagggg	chr20:62589025-62589279(-)$1	254	81	95	20.1250
GGGCAGGGUCUGGG	chr9:139904698-139904994(-)$1	296	91	105	21.1666
GGGCCGAGUCUGGG	chr19:41119488-41119744(+)$1	256	126	140	18.7708
CGGCCUGGGCUGGG	chr7:5569486-5569711(-)$1	225	27	41	19.7083
Agggcggggagggg	chr17:4851237-4851507(-)$1	270	200	214	18.0416
GAGCAAGGGCAGGG	chr20:32263624-32263915(-)$1	291	28	42	16.1666
GGGGCGGGGAAGGC	chr9:139905566-139905811(-)$1	245	188	202	16.7916
gggcgggggcgggg	chr9:139905325-139905570(-)$1	245	165	179	23.5625
GGGAGGGGCCUGGG	chr19:18547840-18548100(-)$1	260	24	38	17.6250
GUGCCGGGGGCGGG	chr19:3785612-3785888(-)$1	276	102	116	18.4583
GGGCCGGGCUGGGG	chr19:972870-973132(+)$1	262	93	107	19.6041
GGCCCGGAGGUGGG	chr19:1806125-1806427(-)$1	302	143	157	16.3750
GGGCCGAGGAAAGG	chr19:41770623-41770868(+)$1	245	120	134	15.7500
GGGCAGGGGCUGGG	chr9:35690594-35690856(-)$1	262	242	256	24.9166
AGCCCGGUGCUGGG	chr9:95476213-95476489(-)$1	276	21	35	14.6041
AGGCCGCGGCAGGG	chr1:36789362-36789621(+)$1	259	21	35	17.6250

#otherMatches

#Struct PSSM
meeeee22gggggg	chr16:1821023-1821340(-)$1	317	252	266	16.3750
ggg===========	chr1:52825790-52826170(-)$1	380	208	222	17.2083
======="""ffff	chr14:23791040-23791278(+)$1	238	119	133	25.6458
KKEEEEELLLA{BB	chr19:2096734-2097022(+)$1	288	60	74	22.4166
FFFMMMMGGGGGGG	chr19:50817471-50817793(-)$1	322	118	132	16.0625
DYYFFFFFF:::ee	chr6:29600649-29600926(-)$1	277	240	254	19.2916
EEE{EEEEEKKBBG	chr9:139743352-139743703(+)$1	351	18	32	19.1875
##ffffff"""ccc	chr1:36787596-36787852(+)$1	256	146	160	17.9375
JJ:ggggggg[fff	chr9:139905445-139905712(-)$1	267	89	103	16.7916
KKGGGGGGG{DDDD	chr11:18034093-18034427(-)$1	334	8	22	16.5833
[ffffff[axxxxx	chr3:100428664-100428950(+)$1	286	94	108	15.0208
hhhhhh[ddddmmm	chr9:80646036-80646322(-)$1	286	59	73	16.4791
EEEcccmmmmcccG	chr16:28222743-28223010(-)$1	267	15	29	21.8958
GGGGFFFFFFKKA{	chr2:242447505-242447838(-)$1	333	36	50	19.1875
=[bb[=========	chr12:133405159-133405416(-)$1	257	116	130	19.8125
ee333dddd22ddd	chr19:50815919-50816230(-)$1	311	70	84	16.1666
CCCFFFFFFEEEEE	chr19:50880574-50880931(+)$1	357	40	54	16.6875
{CCCKKBBLLLFFF	chr19:7978275-7978589(+)$1	314	32	46	16.0625
dddd!!bbvvvvvv	chr19:50880484-50880737(+)$1	253	130	144	16.6875
HHHHH{AKKFFFFF	chr6:29571107-29571370(-)$1	263	80	94	15.7500
ccc:::EEEEEKKF	chr20:60709719-60709989(+)$1	270	100	114	17.8333
ffffff[a!!bb[c	chr17:7815311-7815595(+)$1	284	82	96	17.7291
]dddd]eeeee]bb	chr4:2935863-2936146(-)$1	283	85	99	26.2708
:BB{IIIIIIIIIK	chr6:31938137-31938452(-)$1	315	110	124	14.6041
##ffffff"""ccc	chr1:36787722-36787988(+)$1	266	20	34	17.9375
ddd]bb]hhhhhhh	chr10:75578180-75578512(-)$1	332	190	204	14.7083
pppppiiiiiiiii	chr9:35690431-35690702(-)$1	271	88	102	24.9166
333adddd]bbddd	chr1:155883679-155883970(-)$1	291	136	150	18.7708
"a[bb[ammmma]b	chr11:208996-209303(+)$1	307	51	65	18.3541
ddd"""iiiiiiii	chr4:726046-726330(+)$1	284	17	31	19.6041
ff]ffffff]eeee	chr3:128205802-128206058(-)$1	256	38	52	15.5416
mdddd]bb22a]==	chr2:64068081-64068414(+)$1	333	43	57	16.0625
DDDKKCCCNNNNNF	chr20:62589025-62589279(-)$1	254	81	95	20.1250
{BBA::DDDDCCC{	chr9:139904698-139904994(-)$1	296	91	105	21.1666
tttccc]dddd]a]	chr19:41119488-41119744(+)$1	256	126	140	18.7708
]eeeee:dddd[dd	chr7:5569486-5569711(-)$1	225	27	41	19.7083
4hhhhhhhh22fff	chr17:4851237-4851507(-)$1	270	200	214	18.0416
::::::EEEEEDDD	chr20:32263624-32263915(-)$1	291	28	42	16.1666
EEEEEDDDDYYCCC	chr9:139905566-139905811(-)$1	245	188	202	16.7916
c]cccbbbbeeeee	chr9:139905325-139905570(-)$1	245	165	179	23.5625
eeeeebb####fff	chr19:18547840-18548100(-)$1	260	24	38	17.6250
gggggggDDDD{CC	chr19:3785612-3785888(-)$1	276	102	116	18.4583
"ffffff!!fffff	chr19:972870-973132(+)$1	262	93	107	19.6041
ffffff[bb[bbpp	chr19:1806125-1806427(-)$1	302	143	157	16.3750
+++++++++++++c	chr19:41770623-41770868(+)$1	245	120	134	15.7500
:cccmmmmccc:::	chr9:35690594-35690856(-)$1	262	242	256	24.9166
[dddd[dddd[ccc	chr9:95476213-95476489(-)$1	276	21	35	14.6041
CCCKKHHHHHHHH:	chr1:36789362-36789621(+)$1	259	21	35	17.6250

#DB
.)))))..))))))	chr16:1821023-1821340(-)$1	1	252	266	16.3750
)))(((((((((((	chr1:52825790-52826170(-)$1	1	208	222	17.2083
(((((((...((((	chr14:23791040-23791278(+)$1	1	119	133	25.6458
..(((((...(.((	chr19:2096734-2097022(+)$1	1	60	74	22.4166
(((....(((((((	chr19:50817471-50817793(-)$1	1	118	132	16.0625
)..))))))...((	chr6:29600649-29600926(-)$1	1	240	254	19.2916
(((.(((((..(((	chr9:139743352-139743703(+)$1	1	18	32	19.1875
..((((((...(((	chr1:36787596-36787852(+)$1	1	146	160	17.9375
)).(((((((.(((	chr9:139905445-139905712(-)$1	1	89	103	16.7916
..(((((((.((((	chr11:18034093-18034427(-)$1	1	8	22	16.5833
.((((((.(.....	chr3:100428664-100428950(+)$1	1	94	108	15.0208
((((((.((((...	chr9:80646036-80646322(-)$1	1	59	73	16.4791
((((((....)))(	chr16:28222743-28223010(-)$1	1	15	29	21.8958
((((((((((..(.	chr2:242447505-242447838(-)$1	1	36	50	19.1875
(.((.(((((((((	chr12:133405159-133405416(-)$1	1	116	130	19.8125
))...))))..)))	chr19:50815919-50816230(-)$1	1	70	84	16.1666
((((((((((((((	chr19:50880574-50880931(+)$1	1	40	54	16.6875
.(((..((...(((	chr19:7978275-7978589(+)$1	1	32	46	16.0625
((((..((......	chr19:50880484-50880737(+)$1	1	130	144	16.6875
(((((.(..(((((	chr6:29571107-29571370(-)$1	1	80	94	15.7500
)))...(((((..(	chr20:60709719-60709989(+)$1	1	100	114	17.8333
((((((.(..((.(	chr17:7815311-7815595(+)$1	1	82	96	17.7291
.)))).))))).))	chr4:2935863-2936146(-)$1	1	85	99	26.2708
.((.(((((((((.	chr6:31938137-31938452(-)$1	1	110	124	14.6041
..((((((...(((	chr1:36787722-36787988(+)$1	1	20	34	17.9375
))).)).)))))))	chr10:75578180-75578512(-)$1	1	190	204	14.7083
.....)))))))))	chr9:35690431-35690702(-)$1	1	88	102	24.9166
...))))).)))))	chr1:155883679-155883970(-)$1	1	136	150	18.7708
.(.((.(....).)	chr11:208996-209303(+)$1	1	51	65	18.3541
(((...((((((((	chr4:726046-726330(+)$1	1	17	31	19.6041
)).)))))).))))	chr3:128205802-128206058(-)$1	1	38	52	15.5416
.)))).))..).))	chr2:64068081-64068414(+)$1	1	43	57	16.0625
(((..(((.....(	chr20:62589025-62589279(-)$1	1	81	95	20.1250
.(((..(((((((.	chr9:139904698-139904994(-)$1	1	91	105	21.1666
...))).)))).).	chr19:41119488-41119744(+)$1	1	126	140	18.7708
.))))).((((.((	chr7:5569486-5569711(-)$1	1	27	41	19.7083
.))))))))..)))	chr17:4851237-4851507(-)$1	1	200	214	18.0416
......((((((((	chr20:32263624-32263915(-)$1	1	28	42	16.1666
)))))))))..)))	chr9:139905566-139905811(-)$1	1	188	202	16.7916
).))))))))))))	chr9:139905325-139905570(-)$1	1	165	179	23.5625
(((((((....(((	chr19:18547840-18548100(-)$1	1	24	38	17.6250
)))))))((((.((	chr19:3785612-3785888(-)$1	1	102	116	18.4583
.((((((..(((((	chr19:972870-973132(+)$1	1	93	107	19.6041
((((((.((.((..	chr19:1806125-1806427(-)$1	1	143	157	16.3750
.............(	chr19:41770623-41770868(+)$1	1	120	134	15.7500
.(((....)))...	chr9:35690594-35690856(-)$1	1	242	256	24.9166
.((((.((((.(((	chr9:95476213-95476489(-)$1	1	21	35	14.6041
(((..((((((((.	chr1:36789362-36789621(+)$1	1	21	35	17.6250

#PSSM
G : 0.60	g : 0.16	A : 0.08	C : 0.06	c : 0.04	U : 0.04	
G : 0.64	g : 0.22	A : 0.08	U : 0.04	
G : 0.64	g : 0.20	A : 0.06	C : 0.06	U : 0.02	
C : 0.62	c : 0.12	A : 0.10	g : 0.06	G : 0.04	U : 0.04	
C : 0.41	A : 0.20	G : 0.12	c : 0.10	U : 0.06	g : 0.04	a : 0.04	
G : 0.62	g : 0.12	U : 0.08	A : 0.08	c : 0.04	u : 0.02	C : 0.02	
G : 0.62	g : 0.18	U : 0.06	C : 0.06	A : 0.06	
G : 0.72	g : 0.18	U : 0.06	A : 0.02	
G : 0.64	g : 0.16	C : 0.08	U : 0.06	a : 0.02	A : 0.02	
C : 0.37	A : 0.25	G : 0.14	a : 0.08	c : 0.08	U : 0.04	g : 0.02	
U : 0.41	G : 0.20	A : 0.16	g : 0.08	u : 0.06	c : 0.02	a : 0.02	C : 0.02	
G : 0.79	g : 0.16	c : 0.02	A : 0.02	
G : 0.79	g : 0.18	U : 0.02	
G : 0.72	g : 0.18	C : 0.08	

#score	882.8749999999998
#seq	48
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_UTR_m1_run1.nuc.txt

#NT
gggaggggggcgg	chr14:35873154-35873399(-)$1	245	210	223	29.8653
GGGGAGGGGGCGG	chr8:494882-495129(-)$1	247	205	218	24.3846
gggcggagggcgg	chr21:45284974-45285260(+)$1	286	78	91	23.2307
GGCCGGGGGGCGG	chr15:100106517-100106841(+)$1	324	219	232	23.3269
GGGAGGUGGGUGG	chr12:54679603-54679829(+)$1	226	55	68	22.7500
GGGUGGGGGGCGG	chr19:49610816-49611058(+)$1	242	178	191	27.0769
gggcagggggcgg	chr7:27153319-27153586(-)$1	267	55	68	24.4807
GGGAGUGGGGCGG	chr5:176981009-176981290(-)$1	281	101	114	26.2115
CUGAGGGGGGCGG	chr19:50016277-50016539(+)$1	262	111	124	21.4038
GGGGUGGGGGUGG	chr11:75283091-75283353(+)$1	262	144	157	21.2115
GGGAGGGAGGAGG	chrX:53710844-53711124(-)$1	280	94	107	22.9423
GGAAGGGGGUCGG	chr11:61197214-61197446(-)$1	232	126	139	20.9230
cggagggcggcgg	chr3:52567594-52567905(-)$1	311	82	95	22.1730
GGGGGAGGGGCGG	chr6:32157586-32157818(-)$1	232	79	92	23.6153
GGGAGGGAGGGGG	chr1:155658339-155658600(-)$1	261	92	105	22.7500
GGGAUGGGGGCGG	chr9:35689907-35690212(-)$1	305	106	119	26.4038
GGGGUGGGGGCGG	chr8:26149367-26149635(+)$1	268	114	127	24.0961
ggggagggggcgg	chr9:130331182-130331473(-)$1	291	32	45	24.3846
GGGAGGUGCGCGG	chr16:30959659-30959943(+)$1	284	236	249	21.3076
GGUAGGGCGGCGG	chr5:134181808-134182101(+)$1	293	135	148	21.8846
GGGAGGGGGGUGG	chr14:55255774-55256096(+)$1	322	154	167	26.9807
GGGAGGGGGGAGG	chr16:30535521-30535782(-)$1	261	237	250	26.9807
CGGAGUGGGGCGG	chr2:190648765-190649105(-)$1	340	95	108	22.1730
gggcgggcggcgg	chr10:74927829-74928194(+)$1	365	344	357	24.0000
cggaggcgggcgg	chr11:62494466-62494766(-)$1	300	42	55	21.4038
GGGAGGGCGGGGG	chr14:32546426-32546659(+)$1	233	32	45	23.1346
ggggagggggcgg	chr11:65770028-65770402(+)$1	374	131	144	24.3846
GGGCCGGGGGUGG	chr2:230786214-230786448(-)$1	234	38	51	21.0192
GUGAGGGGAGCGG	chr7:55639310-55639636(-)$1	326	120	133	20.9230
GGUGGGGGGGCGG	chr17:55333982-55334231(+)$1	249	96	109	23.2307
GGGAGUGGGGCGG	chr5:176980949-176981209(-)$1	260	20	33	26.2115
GGGUGGGGGGCGG	chr19:42751787-42752053(-)$1	266	1	14	27.0769
GGGGUGGGGGUGG	chr12:6560448-6560712(-)$1	264	104	117	21.2115
GGGAGGGCGGAGG	chr20:43029879-43030086(+)$1	207	57	70	23.3269
GGGAGGGGCGGGG	chr11:47198514-47198772(-)$1	258	75	88	22.4615
gggcggggggcgg	chr8:143484112-143484402(-)$1	290	76	89	27.6538
GGGAGGGGGGCGG	chr20:32441343-32441592(+)$1	249	213	226	29.8653
GGGAAGGGGGCGG	chr2:97535555-97535873(-)$1	318	26	39	26.6923
GGCAGGGGGUCGG	chr20:57274158-57274413(+)$1	255	237	250	21.0192
GGGAGGGGGGUUG	chr16:69419296-69419569(-)$1	273	90	103	22.3653
gcgcggggggcgg	chrX:46771910-46772201(+)$1	291	63	76	23.2307
GGGAGUGGGGAGG	chr1:36602194-36602544(-)$1	350	161	174	23.3269
GGGAAGGGGGAGG	chr13:79979965-79980298(-)$1	333	121	134	23.8076
GCGAGGGGGACGG	chr17:45918344-45918699(-)$1	355	222	235	20.8269
GGGAGGUGCGCGG	chr16:30959864-30960141(+)$1	277	31	44	21.3076
GGGCGUGGGGGGG	chr7:2293652-2293902(-)$1	250	20	33	20.9230
GGGAGCGGGGCAG	chr8:41348039-41348319(+)$1	280	187	200	21.4038
uggaggggggcgg	chr7:766809-767102(-)$1	293	43	56	25.6346
GGGAGAGGGGCAG	chr15:52970854-52971106(-)$1	252	57	70	21.4038
GGGUGGGGGGAGG	chr2:97525595-97525842(-)$1	247	71	84	24.1923
GGGCAggcggcgg	chr2:118771426-118771734(-)$1	308	20	33	20.8269

#otherMatches

#Struct PSSM
ee!!bb[a[bb[b	chr1:15850780-15851069(-)$1	289	45	58	21.6923
GGGG}GGGGGGG\	chr14:35873154-35873399(-)$1	245	210	223	29.8653
]dddd]ccc]a]a	chr8:494882-495129(-)$1	247	205	218	24.3846
===a::::CCCMM	chr21:45284974-45285260(+)$1	286	78	91	23.2307
YCCC=========	chr15:100106517-100106841(+)$1	324	219	232	23.3269
ffff]a]eeeee3	chr12:54679603-54679829(+)$1	226	55	68	22.7500
========eeeee	chr19:49610816-49611058(+)$1	242	178	191	27.0769
gggggg22ccc]a	chr7:27153319-27153586(-)$1	267	55	68	24.4807
ICCC{DDDD{AKK	chr5:176981009-176981290(-)$1	281	101	114	26.2115
Bffffff"""ccc	chr19:50016277-50016539(+)$1	262	111	124	21.4038
ccc]bbbb!!bbo	chr11:75283091-75283353(+)$1	262	144	157	21.2115
eeDDDD}BBGGGG	chrX:53710844-53711124(-)$1	280	94	107	22.9423
cqqqqqqqqccc]	chr11:61197214-61197446(-)$1	232	126	139	20.9230
[cccffffff[ee	chr3:52567594-52567905(-)$1	311	82	95	22.1730
KDDDD{GGGGGGG	chr6:32157586-32157818(-)$1	232	79	92	23.6153
:::::::::::::	chr1:155658339-155658600(-)$1	261	92	105	22.7500
HHHH}FFFFFFff	chr9:35689907-35690212(-)$1	305	106	119	26.4038
]ccc]ccc]bb33	chr8:26149367-26149635(+)$1	268	114	127	24.0961
rrrrrrrrrbb33	chr9:130331182-130331473(-)$1	291	32	45	24.3846
GGGGGG}A}DDDD	chr16:30959659-30959943(+)$1	284	236	249	21.3076
uuuubb]ddddcc	chr5:134181808-134182101(+)$1	293	135	148	21.8846
JJJJJJJJJJZZZ	chr14:55255774-55256096(+)$1	322	154	167	26.9807
d55555ccc22ee	chr16:30535521-30535782(-)$1	261	237	250	26.9807
ffffFFFFFF{GG	chr2:190648765-190649105(-)$1	340	95	108	22.1730
}CCCDDDDYYIII	chr10:74927829-74928194(+)$1	365	344	357	24.0000
dd22dddd]ccc:	chr11:62494466-62494766(-)$1	300	42	55	21.4038
$$$$bb[bbqqqq	chr14:32546426-32546659(+)$1	233	32	45	23.1346
KKALLLGGGGGGG	chr11:65770028-65770402(+)$1	374	131	144	24.3846
ddiiiiiiiii::	chr2:230786214-230786448(-)$1	234	38	51	21.0192
tttttttttta]c	chr7:55639310-55639636(-)$1	326	120	133	20.9230
iiiiiii]eeeee	chr17:55333982-55334231(+)$1	249	96	109	23.2307
FDDDD{A{GGGGG	chr5:176980949-176981209(-)$1	260	20	33	26.2115
==========[bb	chr19:42751787-42752053(-)$1	266	1	14	27.0769
IIIIII:::ffff	chr12:6560448-6560712(-)$1	264	104	117	21.2115
DD:::::::ffff	chr20:43029879-43030086(+)$1	207	57	70	23.3269
bb22=========	chr11:47198514-47198772(-)$1	258	75	88	22.4615
{DDDD:bb[dddd	chr8:143484112-143484402(-)$1	290	76	89	27.6538
fDDDDEEEEEDDD	chr20:32441343-32441592(+)$1	249	213	226	29.8653
c4444eeeee22c	chr2:97535555-97535873(-)$1	318	26	39	26.6923
A}FFFFFFYYA}B	chr20:57274158-57274413(+)$1	255	237	250	21.0192
B{CCC{FFFFFFc	chr16:69419296-69419569(-)$1	273	90	103	22.3653
LEEEEE::::bb[	chrX:46771910-46772201(+)$1	291	63	76	23.2307
FF{GGGGGGG:::	chr1:36602194-36602544(-)$1	350	161	174	23.3269
GG}EEEEEYYCCC	chr13:79979965-79980298(-)$1	333	121	134	23.8076
hbb[ddddnnnnn	chr17:45918344-45918699(-)$1	355	222	235	20.8269
ssffffff]a]gg	chr16:30959864-30960141(+)$1	277	31	44	21.3076
fccc[hhhhhhhh	chr7:2293652-2293902(-)$1	250	20	33	20.9230
''''bblllbb77	chr8:41348039-41348319(+)$1	280	187	200	21.4038
FFFFLLLA{DDDD	chr7:766809-767102(-)$1	293	43	56	25.6346
nffffff22a444	chr15:52970854-52971106(-)$1	252	57	70	21.4038
]ccc:a[ffffff	chr2:97525595-97525842(-)$1	247	71	84	24.1923
hhhhhhbb[dddd	chr2:118771426-118771734(-)$1	308	20	33	20.8269

#DB
((..((.(.((.(	chr1:15850780-15851069(-)$1	1	45	58	21.6923
)))).))))))).	chr14:35873154-35873399(-)$1	1	210	223	29.8653
.)))).))).).)	chr8:494882-495129(-)$1	1	205	218	24.3846
))))....(((..	chr21:45284974-45285260(+)$1	1	78	91	23.2307
.)))(((((((((	chr15:100106517-100106841(+)$1	1	219	232	23.3269
)))).).))))).	chr12:54679603-54679829(+)$1	1	55	68	22.7500
)))))))))))))	chr19:49610816-49611058(+)$1	1	178	191	27.0769
))))))..))).)	chr7:27153319-27153586(-)$1	1	55	68	24.4807
((((.((((.(..	chr5:176981009-176981290(-)$1	1	101	114	26.2115
(((((((...(((	chr19:50016277-50016539(+)$1	1	111	124	21.4038
))).))((..((.	chr11:75283091-75283353(+)$1	1	144	157	21.2115
)))))).))))))	chrX:53710844-53711124(-)$1	1	94	107	22.9423
(........))).	chr11:61197214-61197446(-)$1	1	126	139	20.9230
.(((((((((.((	chr3:52567594-52567905(-)$1	1	82	95	22.1730
.((((.(((((((	chr6:32157586-32157818(-)$1	1	79	92	23.6153
.............	chr1:155658339-155658600(-)$1	1	92	105	22.7500
)))).))))))((	chr9:35689907-35690212(-)$1	1	106	119	26.4038
.))).))).))..	chr8:26149367-26149635(+)$1	1	114	127	24.0961
.........))..	chr9:130331182-130331473(-)$1	1	32	45	24.3846
)))))).).))))	chr16:30959659-30959943(+)$1	1	236	249	21.3076
....)).))))))	chr5:134181808-134182101(+)$1	1	135	148	21.8846
))))))))))...	chr14:55255774-55256096(+)$1	1	154	167	26.9807
).....)))..))	chr16:30535521-30535782(-)$1	1	237	250	26.9807
))))((((((.((	chr2:190648765-190649105(-)$1	1	95	108	22.1730
.)))))))..)))	chr10:74927829-74928194(+)$1	1	344	357	24.0000
))..)))).))).	chr11:62494466-62494766(-)$1	1	42	55	21.4038
....((.((....	chr14:32546426-32546659(+)$1	1	32	45	23.1346
..(...(((((((	chr11:65770028-65770402(+)$1	1	131	144	24.3846
)))))))))))..	chr2:230786214-230786448(-)$1	1	38	51	21.0192
..........).)	chr7:55639310-55639636(-)$1	1	120	133	20.9230
))))))).)))))	chr17:55333982-55334231(+)$1	1	96	109	23.2307
(((((.(.(((((	chr5:176980949-176981209(-)$1	1	20	33	26.2115
((((((((((.((	chr19:42751787-42752053(-)$1	1	1	14	27.0769
))))))...((((	chr12:6560448-6560712(-)$1	1	104	117	21.2115
((.......((((	chr20:43029879-43030086(+)$1	1	57	70	23.3269
))..)))))))))	chr11:47198514-47198772(-)$1	1	75	88	22.4615
.((((.((.((((	chr8:143484112-143484402(-)$1	1	76	89	27.6538
)))))))))))))	chr20:32441343-32441592(+)$1	1	213	226	29.8653
)....)))))..)	chr2:97535555-97535873(-)$1	1	26	39	26.6923
).))))))..).)	chr20:57274158-57274413(+)$1	1	237	250	21.0192
(.(((.(((((((	chr16:69419296-69419569(-)$1	1	90	103	22.3653
.(((((....((.	chrX:46771910-46772201(+)$1	1	63	76	23.2307
((.(((((((...	chr1:36602194-36602544(-)$1	1	161	174	23.3269
)).)))))..)))	chr13:79979965-79980298(-)$1	1	121	134	23.8076
(((.((((.....	chr17:45918344-45918699(-)$1	1	222	235	20.8269
..)))))).).))	chr16:30959864-30960141(+)$1	1	31	44	21.3076
((((.((((((((	chr7:2293652-2293902(-)$1	1	20	33	20.9230
....((...))..	chr8:41348039-41348319(+)$1	1	187	200	21.4038
((((...(.((((	chr7:766809-767102(-)$1	1	43	56	25.6346
.))))))..)...	chr15:52970854-52971106(-)$1	1	57	70	21.4038
.))).(.((((((	chr2:97525595-97525842(-)$1	1	71	84	24.1923
))))))((.((((	chr2:118771426-118771734(-)$1	1	20	33	20.8269

#PSSM
G : 0.73	g : 0.15	u : 0.03	C : 0.03	c : 0.03	
G : 0.71	g : 0.21	U : 0.03	c : 0.01	C : 0.01	
G : 0.67	g : 0.23	C : 0.03	U : 0.03	A : 0.01	
A : 0.51	G : 0.11	a : 0.09	c : 0.09	C : 0.07	U : 0.05	g : 0.03	
G : 0.59	g : 0.17	A : 0.07	U : 0.07	a : 0.05	C : 0.01	
G : 0.59	g : 0.23	U : 0.09	A : 0.03	c : 0.01	C : 0.01	
G : 0.69	g : 0.21	U : 0.05	a : 0.01	c : 0.01	
G : 0.65	g : 0.19	c : 0.05	C : 0.05	A : 0.03	
G : 0.67	g : 0.24	C : 0.05	A : 0.01	
G : 0.69	g : 0.24	U : 0.03	A : 0.01	
C : 0.44	c : 0.24	U : 0.11	A : 0.11	G : 0.07	
G : 0.69	g : 0.24	A : 0.03	U : 0.01	
G : 0.75	g : 0.24	

#score	1225.1153846153852
#seq	52
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_CDS_m3_run2.nuc.txt

#NT

#otherMatches

#Struct PSSM
pppdddd22gggggggccc]dddd4444ffffff]eeeee::eeeeennnnneeeee::bb[ddddpppppppdddd]bbeeeeeooooooeeeeecccffffff[bb%%%%%%cccuuuuuuuuuuuuccc666666bbffffff22ccc::::::==========++++++++++++++++++ffffff[ccc"""a[dddd[dddd!!bb[ddddqqqqqqqqdddd]bb]dddddddd333a333ccc22ffffff====	chr2:170606080-170606400(+)$1	320	41	305	792.0000

#DB
...))))..)))))))))).))))....)))))).)))))..(((((.....)))))..((.((((.......)))).))(((((......)))))(((((((((.((......(((............)))......))))))))..)))......((((((((((..................((((((.(((...(.((((.((((..((.((((........)))).)).))))))))...)...)))..))))))))))	chr2:170606080-170606400(+)$1	1	41	305	792.0000

#PSSM
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	
G : 1.00	
C : 1.00	
A : 1.00	
C : 1.00	
A : 1.00	
U : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
A : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
A : 1.00	
U : 1.00	
C : 1.00	
A : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
G : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
U : 1.00	
U : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
A : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
U : 1.00	
A : 1.00	
C : 1.00	
U : 1.00	
G : 1.00	

#score	792.0
#seq	1
#width	264
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_transcript_m1_run2.nuc.txt

#NT
GGGGGUGGGG	chr5:137274325-137274605(-)$1	280	258	268	16.7857
GCAGCUGGGG	chr1:988819-989174(+)$1	355	227	237	17.6785
GGGGGUGGGG	chr9:96938414-96938639(+)$1	225	66	76	16.7857
ggagcugggg	chr7:158344223-158344445(-)$1	222	20	30	21.1607
GCAGCUGGAG	chr1:1242483-1242772(-)$1	289	28	38	14.0178
GGUGCUAGGG	chr6:168227223-168227463(-)$1	240	50	60	14.1964
GGGGCUGCGG	chr7:100172861-100173141(-)$1	280	258	268	16.4285
GGAGGUGGGA	chr3:125093458-125093741(-)$1	283	91	101	14.1964
UGAGCAGGGG	chr17:17066403-17066688(+)$1	285	15	25	13.2142
ggggccgggg	chr8:144815522-144815884(-)$1	362	180	190	16.0714
GGGGCUCGGG	chr15:52971188-52971477(-)$1	289	52	62	15.3571
GCAGCUGGGC	chr4:1799488-1799731(+)$1	243	157	167	13.7499
ggggcuggcg	chr2:95825173-95825455(-)$1	282	2	12	16.0714
ggagcuggag	chr6:86352554-86352827(-)$1	273	29	39	17.5000
GCAGCUGGGC	chr14:105339543-105339811(+)$1	268	9	19	13.7499
GGAGGUGCGG	chrX:70586379-70586664(+)$1	285	18	28	14.1964
GUAGGUGGGG	chr18:55989916-55990175(+)$1	259	60	70	14.1071
GUAACUGGGG	chr7:1062256-1062526(-)$1	270	116	126	13.0357
GGAGUUGGGG	chr16:2319580-2319875(+)$1	295	266	276	17.2321
UGAGCUGAGG	chr7:1063687-1063937(-)$1	250	17	27	13.3035
CGGGCUGGGG	chr11:65190341-65190552(+)$1	211	44	54	15.9821
GGGGCUGCGG	chr7:64499220-64499503(+)$1	283	45	55	16.4285
GGUGCUGGAG	chr20:61915384-61915608(+)$1	224	141	151	15.2678
GGUGCUGGGA	chr17:76110840-76111108(-)$1	268	84	94	15.2678
GGGGCUGCGG	chr12:133126766-133127065(+)$1	299	33	43	16.4285
UGGGCUGGGG	chr16:2579938-2580210(+)$1	272	39	49	16.2500
GGGGCUGGGG	chr16:2321239-2321521(+)$1	282	38	48	20.0892
GGAUGUGGGG	chr7:158153632-158153896(-)$1	264	110	120	13.4821
GGAGGCGGGG	chr17:38083346-38083608(-)$1	262	99	109	13.8392
GGCGCGGGGG	chr12:62997318-62997570(+)$1	252	20	30	14.7321
CCAGCUGGGG	chr10:21785456-21785697(-)$1	241	100	110	13.5714
UGAGCUGUGG	chr7:1061174-1061464(-)$1	290	84	94	13.5714
ggagcugucg	chr22:47002767-47003007(+)$1	240	62	72	13.3928
ggagaugggg	chr17:55333766-55334040(+)$1	274	50	60	17.3214
GGAGCUGGGA	chr20:61588450-61588694(+)$1	244	100	110	17.5000
gcagcUGGUG	chr7:158343643-158343899(-)$1	256	136	146	13.5714
ggggccgggg	chr2:220043013-220043409(+)$1	396	102	112	16.0714
ggggcugggc	chr1:3639301-3639596(+)$1	295	10	20	16.1607
GGAGCAGGGA	chr22:22006547-22006845(+)$1	298	175	185	13.3928
GGGGCGGGGG	chr17:76124234-76124496(-)$1	262	100	110	16.0714
UGAGCUGUGG	chr12:692328-692665(-)$1	337	183	193	13.5714
GGAGCUGGAG	chr2:3352123-3352367(-)$1	244	87	97	17.5000
GGGGCGGGGG	chr10:125851097-125851368(-)$1	271	84	94	16.0714
guagcuggga	chr17:57227791-57228039(-)$1	248	46	56	13.7499
GGGGGUGGGG	chr8:144678424-144678676(-)$1	252	85	95	16.7857
GAAGCUGGGA	chr20:3897864-3898096(+)$1	232	205	215	13.6607
GACGCUGGGG	chr20:57467327-57467612(+)$1	285	114	124	14.9107
AGUGCUGGGG	chr22:33155446-33155675(-)$1	229	42	52	14.7321
GGACCUGGGG	chr19:50168009-50168263(-)$1	254	215	225	16.6964
ggcacugggg	chr9:116970964-116971215(+)$1	251	79	89	14.3750
GGAGCUGGAG	chr1:21983528-21983755(-)$1	227	5	15	17.5000
GGAGCUGGGG	chr7:158343914-158344145(-)$1	231	57	67	21.1607
GGGGAUGGGG	chr9:136627530-136627802(-)$1	272	6	16	16.2500
GGAUCUGGAG	chr15:34678935-34679214(-)$1	279	115	125	13.1250
GGUGCUGUGG	chr19:56182116-56182381(+)$1	265	169	179	15.1785

#otherMatches

#Struct PSSM
C{CCCBB{HH	chr7:100172738-100172979(-)$1	241	96	106	16.4285
ccEEEEE}BB	chr5:137274325-137274605(-)$1	280	258	268	16.7857
dddd[eeeee	chr1:988819-989174(+)$1	355	227	237	17.6785
pppddddbbm	chr9:96938414-96938639(+)$1	225	66	76	16.7857
FFFFFFcccm	chr7:158344223-158344445(-)$1	222	20	30	21.1607
bb]dddd::e	chr1:1242483-1242772(-)$1	289	28	38	14.0178
b[ffffff""	chr6:168227223-168227463(-)$1	240	50	60	14.1964
DDD}FFFFFF	chr7:100172861-100173141(-)$1	280	258	268	16.4285
CCC:ccc[bb	chr3:125093458-125093741(-)$1	283	91	101	14.1964
dddd22a22c	chr17:17066403-17066688(+)$1	285	15	25	13.2142
b]dddd:EEE	chr8:144815522-144815884(-)$1	362	180	190	16.0714
IIIIIIDDDD	chr15:52971188-52971477(-)$1	289	52	62	15.3571
3a]ccc]eee	chr4:1799488-1799731(+)$1	243	157	167	13.7499
CLLLFFFFFF	chr2:95825173-95825455(-)$1	282	2	12	16.0714
GGGGGGGKKA	chr6:86352554-86352827(-)$1	273	29	39	17.5000
[eeeee[eee	chr14:105339543-105339811(+)$1	268	9	19	13.7499
A{DDDDEEEE	chrX:70586379-70586664(+)$1	285	18	28	14.1964
c[ggggggg[	chr18:55989916-55990175(+)$1	259	60	70	14.1071
bb22ccc]dd	chr7:1062256-1062526(-)$1	270	116	126	13.0357
FYYEEEEEZZ	chr16:2319580-2319875(+)$1	295	266	276	17.2321
JJJJJJJJJJ	chr7:1063687-1063937(-)$1	250	17	27	13.3035
FFEEEEEMMM	chr11:65190341-65190552(+)$1	211	44	54	15.9821
DKKEEEEE{A	chr7:64499220-64499503(+)$1	283	45	55	16.4285
:CCC{A{GGG	chr20:61915384-61915608(+)$1	224	141	151	15.2678
dd[ggggggg	chr17:76110840-76111108(-)$1	268	84	94	15.2678
HHHHHHHHff	chr12:133126766-133127065(+)$1	299	33	43	16.4285
fffeeeeess	chr16:2579938-2580210(+)$1	272	39	49	16.2500
[bbcccoooo	chr16:2321239-2321521(+)$1	282	38	48	20.0892
]ffffff]bb	chr7:158153632-158153896(-)$1	264	110	120	13.4821
EE{A{EEEEE	chr17:38083346-38083608(-)$1	262	99	109	13.8392
[=========	chr12:62997318-62997570(+)$1	252	20	30	14.7321
ee::eeeeel	chr10:21785456-21785697(-)$1	241	100	110	13.5714
]ddddfffff	chr7:1061174-1061464(-)$1	290	84	94	13.5714
EE{AKKDDDD	chr22:47002767-47003007(+)$1	240	62	72	13.3928
bb333bb]a]	chr17:55333766-55334040(+)$1	274	50	60	17.3214
vvvveeeee]	chr20:61588450-61588694(+)$1	244	100	110	17.5000
dd[ddddfff	chr7:158343643-158343899(-)$1	256	136	146	13.5714
ccc[cccmmm	chr2:220043013-220043409(+)$1	396	102	112	16.0714
nnnffffffF	chr1:3639301-3639596(+)$1	295	10	20	16.1607
=========&	chr22:22006547-22006845(+)$1	298	175	185	13.3928
A{CCC{AMMM	chr17:76124234-76124496(-)$1	262	100	110	16.0714
ettttttttt	chr12:692328-692665(-)$1	337	183	193	13.5714
iiiiimmmmi	chr2:3352123-3352367(-)$1	244	87	97	17.5000
mmmmgggggg	chr10:125851097-125851368(-)$1	271	84	94	16.0714
a22ddddccc	chr17:57227791-57228039(-)$1	248	46	56	13.7499
oeeeee]ccc	chr8:144678424-144678676(-)$1	252	85	95	16.7857
b]dddd]bb:	chr20:3897864-3898096(+)$1	232	205	215	13.6607
22a]bb::::	chr20:57467327-57467612(+)$1	285	114	124	14.9107
ffffff]a]b	chr22:33155446-33155675(-)$1	229	42	52	14.7321
HHHHHH||||	chr19:50168009-50168263(-)$1	254	215	225	16.6964
peeeee22bb	chr9:116970964-116971215(+)$1	251	79	89	14.3750
A{AKKBB{A{	chr1:21983528-21983755(-)$1	227	5	15	17.5000
ff]a]eeeee	chr7:158343914-158344145(-)$1	231	57	67	21.1607
mmmmddddFF	chr9:136627530-136627802(-)$1	272	6	16	16.2500
dddd::ffff	chr15:34678935-34679214(-)$1	279	115	125	13.1250
eeeccc[ccc	chr19:56182116-56182381(+)$1	265	169	179	15.1785

#DB
(.(((((.((	chr7:100172738-100172979(-)$1	1	96	106	16.4285
))))))).))	chr5:137274325-137274605(-)$1	1	258	268	16.7857
((((.(((((	chr1:988819-989174(+)$1	1	227	237	17.6785
...))))((.	chr9:96938414-96938639(+)$1	1	66	76	16.7857
(((((((((.	chr7:158344223-158344445(-)$1	1	20	30	21.1607
)).))))..(	chr1:1242483-1242772(-)$1	1	28	38	14.0178
(.((((((..	chr6:168227223-168227463(-)$1	1	50	60	14.1964
))).))))))	chr7:100172861-100173141(-)$1	1	258	268	16.4285
(((.(((.((	chr3:125093458-125093741(-)$1	1	91	101	14.1964
))))..)..)	chr17:17066403-17066688(+)$1	1	15	25	13.2142
).)))).)))	chr8:144815522-144815884(-)$1	1	180	190	16.0714
((((((((((	chr15:52971188-52971477(-)$1	1	52	62	15.3571
.).))).)))	chr4:1799488-1799731(+)$1	1	157	167	13.7499
(...((((((	chr2:95825173-95825455(-)$1	1	2	12	16.0714
(((((((..(	chr6:86352554-86352827(-)$1	1	29	39	17.5000
.(((((.(((	chr14:105339543-105339811(+)$1	1	9	19	13.7499
(.((((((((	chrX:70586379-70586664(+)$1	1	18	28	14.1964
(.(((((((.	chr18:55989916-55990175(+)$1	1	60	70	14.1071
))..))).))	chr7:1062256-1062526(-)$1	1	116	126	13.0357
)..)))))..	chr16:2319580-2319875(+)$1	1	266	276	17.2321
((((((((((	chr7:1063687-1063937(-)$1	1	17	27	13.3035
(((((((...	chr11:65190341-65190552(+)$1	1	44	54	15.9821
(..(((((.(	chr7:64499220-64499503(+)$1	1	45	55	16.4285
.(((.(.(((	chr20:61915384-61915608(+)$1	1	141	151	15.2678
((.(((((((	chr17:76110840-76111108(-)$1	1	84	94	15.2678
((((((((((	chr12:133126766-133127065(+)$1	1	33	43	16.4285
)))(((((..	chr16:2579938-2580210(+)$1	1	39	49	16.2500
.(((((....	chr16:2321239-2321521(+)$1	1	38	48	20.0892
.)))))).))	chr7:158153632-158153896(-)$1	1	110	120	13.4821
((.(.(((((	chr17:38083346-38083608(-)$1	1	99	109	13.8392
.(((((((((	chr12:62997318-62997570(+)$1	1	20	30	14.7321
))..(((((.	chr10:21785456-21785697(-)$1	1	100	110	13.5714
.)))))))))	chr7:1061174-1061464(-)$1	1	84	94	13.5714
((.(..((((	chr22:47002767-47003007(+)$1	1	62	72	13.3928
))...)).).	chr17:55333766-55334040(+)$1	1	50	60	17.3214
....))))).	chr20:61588450-61588694(+)$1	1	100	110	17.5000
((.(((((((	chr7:158343643-158343899(-)$1	1	136	146	13.5714
(((.(((...	chr2:220043013-220043409(+)$1	1	102	112	16.0714
...))))))(	chr1:3639301-3639596(+)$1	1	10	20	16.1607
(((((((((.	chr22:22006547-22006845(+)$1	1	175	185	13.3928
(.(((.(...	chr17:76124234-76124496(-)$1	1	100	110	16.0714
(.........	chr12:692328-692665(-)$1	1	183	193	13.5714
(((((....)	chr2:3352123-3352367(-)$1	1	87	97	17.5000
....))))))	chr10:125851097-125851368(-)$1	1	84	94	16.0714
)..)))))))	chr17:57227791-57228039(-)$1	1	46	56	13.7499
.))))).)))	chr8:144678424-144678676(-)$1	1	85	95	16.7857
).)))).)).	chr20:3897864-3898096(+)$1	1	205	215	13.6607
..).))....	chr20:57467327-57467612(+)$1	1	114	124	14.9107
)))))).).)	chr22:33155446-33155675(-)$1	1	42	52	14.7321
))))))....	chr19:50168009-50168263(-)$1	1	215	225	16.6964
.)))))..))	chr9:116970964-116971215(+)$1	1	79	89	14.3750
(.(..((.(.	chr1:21983528-21983755(-)$1	1	5	15	17.5000
)).).)))))	chr7:158343914-158344145(-)$1	1	57	67	21.1607
....))))((	chr9:136627530-136627802(-)$1	1	6	16	16.2500
))))..((((	chr15:34678935-34679214(-)$1	1	115	125	13.1250
)))(((.(((	chr19:56182116-56182381(+)$1	1	169	179	15.1785

#PSSM
G : 0.66	g : 0.19	U : 0.08	C : 0.03	A : 0.01	
G : 0.64	g : 0.16	C : 0.08	U : 0.03	A : 0.03	c : 0.01	u : 0.01	
A : 0.42	G : 0.24	a : 0.10	U : 0.08	g : 0.07	C : 0.03	c : 0.01	
G : 0.73	g : 0.17	U : 0.03	A : 0.01	C : 0.01	a : 0.01	
C : 0.62	c : 0.17	G : 0.14	U : 0.01	a : 0.01	A : 0.01	
U : 0.71	u : 0.14	G : 0.05	A : 0.03	c : 0.03	C : 0.01	
G : 0.78	g : 0.17	A : 0.01	C : 0.01	
G : 0.66	g : 0.16	C : 0.08	U : 0.05	A : 0.01	u : 0.01	
G : 0.71	g : 0.12	A : 0.08	c : 0.03	a : 0.01	U : 0.01	
G : 0.69	g : 0.14	A : 0.08	C : 0.03	c : 0.01	a : 0.01	

#score	868.9285714285716
#seq	56
#width	10
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000